607 1557 139 26 17 chr6 3000041 3000335 -146516702 - IAPLTR4 LTR ERVK -10 316 1 1 607 339 294 81 32 chr6 3000997 3001120 -146515917 + ID_B1 SINE B4 94 222 -2 2 607 2224 30 22 0 chr6 3001175 3001446 -146515591 - MT2_Mm LTR ERVL 0 493 217 3 607 514 123 0 0 chr6 3001453 3001526 -146515511 - tRNA-Lys-AAG tRNA tRNA -3 73 1 4 607 3372 50 28 25 chr6 3001990 3002425 -146514612 + RLTR10C LTR ERVK 1 436 0 5 607 1348 41 0 0 chr6 3002425 3002594 -146514443 + MMERVK10C-int LTR ERVK 1 169 -7412 5 607 249 309 0 0 chr6 3002595 3002650 -146514387 + RLTR27 LTR ERVK 221 275 -34 6 607 767 126 0 0 chr6 3002650 3002769 -146514268 + MMERVK10C-int LTR ERVK 225 343 -7238 5 607 659 199 16 5 chr6 3002767 3002954 -146514083 + MMERVK10C-int LTR ERVK 729 917 -6664 5 607 424 177 8 34 chr6 3002943 3003060 -146513977 + MMERVK10C-int LTR ERVK 842 955 -6626 5 607 718 151 284 29 chr6 3003146 3003385 -146513652 + MMERVK10C-int LTR ERVK 312 611 -4795 7 607 285 261 113 23 chr6 3003381 3003514 -146513523 + MMERVK10C-int LTR ERVK 524 668 -5469 7 607 382 111 6 58 chr6 3003514 3003642 -146513395 + MMERVK10C-int LTR ERVK 1721 1947 -5634 7 607 26709 61 5 4 chr6 3003648 3007140 -146509897 + MMERVK10C-int LTR ERVK 2552 6035 -1546 7 607 594 0 0 0 chr6 3007140 3007206 -146509831 + (TA)n Simple_repeat Simple_repeat 2 67 0 8 607 26709 61 5 4 chr6 3007206 3007248 -146509789 + MMERVK10C-int LTR ERVK 6036 6088 -1493 7 607 346 219 259 40 chr6 3007248 3007385 -146509652 + B3 SINE B2 61 211 -5 9 607 24 53 0 0 chr6 3007464 3007502 -146509535 + AT_rich Low_complexity Low_complexity 1 38 0 1 607 3544 35 28 7 chr6 3008342 3008769 -146508268 - RLTR10C LTR ERVK 0 436 1 1 607 22935 55 5 28 chr6 3008769 3011891 -146505146 - MMERVK10C-int LTR ERVK 0 7581 4532 1 607 496 179 9 35 chr6 3011915 3012031 -146505006 - MMETn-int LTR ERVK -2376 2468 2356 1 607 2143 142 19 3 chr6 3012035 3012678 -146504359 - MMERVK10C-int LTR ERVK -3135 4271 3567 1 607 1018 252 62 21 chr6 3012704 3012992 -146504045 - MMERVK10C-int LTR ERVK -4653 2753 2454 1 607 500 204 88 0 chr6 3013005 3013118 -146503919 - RLTR19-int LTR ERVK -5077 1060 938 1 607 513 172 143 29 chr6 3013121 3013340 -146503697 - RLTR19-int LTR ERVK -5469 668 418 1 607 379 89 0 0 chr6 3013343 3013399 -146503638 + ORR1A1 LTR MaLR 291 346 0 1 607 334 227 0 15 chr6 3013399 3013458 -146503579 + B1F1 SINE Alu 90 147 -2 1 607 28 29 0 0 chr6 3013479 3013514 -146503523 + AT_rich Low_complexity Low_complexity 1 35 0 1 607 831 112 0 0 chr6 3013514 3013639 -146503398 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 1 75 10753 143 4 1 chr6 3013645 3015501 -146501536 - L1_Mur1 LINE L1 -156 5730 3869 1 608 2917 126 19 9 chr6 3015501 3015967 -146501070 + RLTR31B_Mm LTR ERVK 1 471 -86 1 608 8035 151 4 80 chr6 3015980 3018004 -146499033 - L1_Mur1 LINE L1 -2011 3875 2261 1 608 1446 59 0 0 chr6 3018004 3018191 -146498846 - L1_Mus1 LINE L1 0 6567 6381 2 608 6695 198 5 171 chr6 3018191 3018766 -146498271 - L1_Mur1 LINE L1 -3613 2264 1700 1 608 22 35 0 0 chr6 3018819 3018848 -146498189 + AT_rich Low_complexity Low_complexity 1 29 0 2 608 580 355 26 48 chr6 3019173 3019484 -146497553 - MTEb LTR MaLR -8 371 68 2 608 198 0 0 0 chr6 3019645 3019667 -146497370 + (CATA)n Simple_repeat Simple_repeat 2 23 0 2 608 347 70 18 0 chr6 3019701 3019744 -146497293 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 608 486 88 0 0 chr6 3019744 3019812 -146497225 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 608 347 70 18 0 chr6 3019812 3019825 -146497212 + (TA)n Simple_repeat Simple_repeat 1 14 0 2 608 217 161 32 16 chr6 3019966 3020029 -146497008 + (TATG)n Simple_repeat Simple_repeat 4 67 0 2 608 774 194 42 6 chr6 3020133 3020299 -146496738 + B2_Mm2 SINE B2 1 172 -23 2 608 260 344 31 15 chr6 3020710 3020840 -146496197 - ID_B1 SINE B4 -3 221 90 2 608 189 178 0 0 chr6 3020850 3020895 -146496142 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3 608 481 270 10 2 chr6 3020913 3021034 -146496003 - B1_Mur2 SINE Alu -8 141 21 3 608 401 321 0 0 chr6 3021587 3021693 -146495344 + B1_Mur2 SINE Alu 2 107 -42 3 608 29 0 0 0 chr6 3021720 3021749 -146495288 + AT_rich Low_complexity Low_complexity 1 29 0 3 608 2986 55 3 3 chr6 3021862 3022241 -146494796 - L1_Mus1 LINE L1 0 6567 6189 3 608 369 43 0 0 chr6 3023655 3023702 -146493335 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 608 299 322 17 11 chr6 3023779 3023955 -146493082 + L1M3 LINE L1 5093 5269 -871 3 608 364 301 139 45 chr6 3024962 3025206 -146491831 + RMER10A LTR ERVL 1 267 -175 3 608 211 162 13 26 chr6 3025232 3025308 -146491729 + T-rich Low_complexity Low_complexity 4 78 0 3 608 330 301 26 59 chr6 3026126 3026278 -146490759 + B3 SINE B2 70 216 0 3 608 4303 128 7 20 chr6 3026396 3027105 -146489932 + Lx3B LINE L1 6270 6969 -4 4 608 1145 75 7 0 chr6 3027680 3027826 -146489211 + B1_Mus1 SINE Alu 1 147 -1 4 608 3415 165 91 16 chr6 3028292 3028993 -146488044 + RMER6A LTR ERVK 3 756 0 4 608 3950 147 20 17 chr6 3029980 3030606 -146486431 - RMER19A LTR ERVK 0 737 107 4 608 468 0 0 0 chr6 3030606 3030658 -146486379 + (TTTC)n Simple_repeat Simple_repeat 2 53 0 4 608 3950 147 20 17 chr6 3030658 3030690 -146486347 - RMER19A LTR ERVK -631 106 77 4 608 334 247 19 32 chr6 3030690 3030845 -146486192 + Lx9 LINE L1 7491 7643 -1 4 608 207 0 0 0 chr6 3031343 3031366 -146485671 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 4 608 207 186 0 0 chr6 3031431 3031474 -146485563 + A-rich Low_complexity Low_complexity 3 45 0 4 608 363 182 21 78 chr6 3031483 3031609 -146485428 + RMER17C LTR ERVK 95 214 -196 4 608 405 0 0 0 chr6 3031609 3031654 -146485383 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 4 608 363 182 21 78 chr6 3031654 3031718 -146485319 + RMER17C LTR ERVK 215 274 -136 4 608 15369 121 1 11 chr6 3031743 3035228 -146481809 - L1_Mus1 LINE L1 -1 6566 3189 5 608 2279 192 52 10 chr6 3035229 3035822 -146481215 + Lx3A LINE L1 3663 4280 -1597 5 608 6764 122 27 3 chr6 3035821 3037846 -146479191 + Lx3A LINE L1 4824 6920 -61 5 608 13026 146 24 17 chr6 3037848 3040399 -146476638 + Lx LINE L1 3418 6003 -651 5 608 1144 88 0 7 chr6 3040399 3040548 -146476489 + B1_Mus1 SINE Alu 1 148 0 5 608 5592 125 33 82 chr6 3040548 3041250 -146475787 + Lx LINE L1 6004 6646 -8 5 608 2884 183 38 39 chr6 3041247 3041958 -146475079 + L1_Mur2 LINE L1 4610 5319 -558 5 608 2004 225 62 18 chr6 3041962 3042514 -146474523 + RLTR22_Mur LTR ERVK 267 842 -1006 5 608 630 283 77 19 chr6 3042650 3042859 -146474178 + RMER12 LTR ERVK 1100 1320 -2 5 608 299 314 0 28 chr6 3042901 3043009 -146474028 + PB1D9 SINE Alu 5 109 -11 5 608 211 234 0 15 chr6 3043031 3043096 -146473941 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 5 608 270 381 76 19 chr6 3043320 3043582 -146473455 - B4A SINE B4 -8 284 8 5 608 453 221 149 35 chr6 3043604 3043745 -146473292 + RLTR11A2 LTR ERVK 13 169 -358 6 608 2172 156 22 0 chr6 3043944 3044360 -146472677 + Lx4A LINE L1 5587 6011 -1047 6 608 36558 11 1 7 chr6 3044350 3049773 -146467264 + L1Md_A LINE L1 203 5586 -297 6 608 8797 16 0 0 chr6 3049773 3050767 -146466270 + L1Md_A LINE L1 5587 6580 -2 6 608 2369 183 78 2 chr6 3050777 3051254 -146465783 + Lx4A LINE L1 5998 6510 -548 6 608 999 211 8 19 chr6 3051257 3051603 -146465434 - L1_Mur2 LINE L1 -6505 1207 873 6 608 1201 325 101 17 chr6 3051953 3052677 -146464360 - Lx8 LINE L1 -5 7468 6684 6 608 748 335 54 10 chr6 3052886 3053296 -146463741 - Lx8 LINE L1 -809 6664 6237 6 608 279 133 0 0 chr6 3053497 3053542 -146463495 + (TATG)n Simple_repeat Simple_repeat 3 47 0 6 608 372 317 71 24 chr6 3053769 3053979 -146463058 - RLTR12B LTR ERVK -43 485 266 6 608 504 339 58 21 chr6 3053975 3054216 -146462821 - RLTR12B LTR ERVK -208 320 71 6 608 590 220 34 0 chr6 3054908 3055026 -146462011 - B3 SINE B2 -92 124 3 6 608 1267 285 3 11 chr6 3055842 3056207 -146460830 + Lx5 LINE L1 6686 7047 -3 6 608 440 307 45 40 chr6 3056665 3056906 -146460131 - RLTR12B LTR ERVK -270 258 47 6 608 621 311 71 93 chr6 3056964 3057318 -146459719 + MTEb LTR MaLR 20 365 -14 7 608 207 0 0 0 chr6 3059170 3059193 -146457844 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 608 691 301 111 14 chr6 3059359 3059813 -146457224 + Lx8 LINE L1 5345 5803 -1670 7 608 933 193 11 22 chr6 3059995 3060085 -146456952 - L1_Mur2 LINE L1 -344 5533 5445 7 608 240 35 0 0 chr6 3060085 3060114 -146456923 + (TTG)n Simple_repeat Simple_repeat 2 30 0 7 608 933 193 11 22 chr6 3060114 3060208 -146456829 - Lx5 LINE L1 -433 5444 5351 7 608 6855 185 46 15 chr6 3060205 3061681 -146455356 + Lx5 LINE L1 5519 7050 0 7 608 32 67 0 0 chr6 3062461 3062521 -146454516 + AT_rich Low_complexity Low_complexity 1 60 0 7 608 287 240 10 0 chr6 3062534 3062638 -146454399 + CT-rich Low_complexity Low_complexity 4 108 0 7 608 4947 73 35 24 chr6 3063243 3063721 -146453316 + L1_Mus3 LINE L1 5970 6460 -178 7 608 471 35 0 0 chr6 3063721 3063778 -146453259 + (TTTTC)n Simple_repeat Simple_repeat 5 61 0 7 608 1093 104 0 0 chr6 3063778 3063913 -146453124 - B1_Mus1 SINE Alu -12 136 2 7 608 4947 73 35 24 chr6 3063913 3064095 -146452942 + L1_Mus3 LINE L1 6461 6637 -1 7 608 310 345 64 60 chr6 3064115 3064365 -146452672 + RMER10A LTR ERVL 14 264 -178 8 608 236 299 89 32 chr6 3064680 3064870 -146452167 - L1M5 LINE L1 -370 5870 5670 8 608 934 50 8 0 chr6 3065046 3065166 -146451871 - B1_Mm SINE Alu 0 147 27 8 608 420 20 0 0 chr6 3065398 3065447 -146451590 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 608 230 309 0 0 chr6 3065833 3065888 -146451149 + RSINE1 SINE B4 53 107 -58 8 608 305 293 49 0 chr6 3066107 3066188 -146450849 + B3A SINE B2 4 88 -110 8 608 394 254 50 66 chr6 3066188 3066386 -146450651 - RLTR46 LTR ERVK 0 320 126 8 608 330 303 24 39 chr6 3066502 3066629 -146450408 + B3A SINE B2 69 193 -5 8 608 7245 75 17 0 chr6 3066678 3067617 -146449420 - L1_Mus3 LINE L1 0 6638 5684 8 608 1611 142 17 0 chr6 3067616 3067855 -146449182 + L1_Mm LINE L1 5499 5741 -142 8 608 1589 204 31 16 chr6 3068239 3068562 -146448475 - Lx4A LINE L1 0 7058 6731 8 608 252 227 0 29 chr6 3068537 3068605 -146448432 + Lx4B LINE L1 6660 6725 -333 9 608 309 306 111 0 chr6 3069804 3069912 -146447125 + MER82 DNA MER2_type 30 149 -504 9 608 548 27 27 0 chr6 3070191 3070264 -146446773 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 9 608 2004 234 68 42 chr6 3071505 3071987 -146445050 - RMER19B LTR ERVK -11 891 397 9 608 287 134 36 33 chr6 3071990 3072077 -146444960 - Lx LINE L1 -65 6589 6512 9 608 245 169 0 33 chr6 3072050 3072111 -146444926 + L1_Mus4 LINE L1 6078 6136 -500 9 608 1479 228 68 71 chr6 3072111 3072278 -146444759 - RMER19B LTR ERVK -480 422 247 9 608 1170 117 0 0 chr6 3072278 3072457 -146444580 + (CCTTG)n Simple_repeat Simple_repeat 1 179 0 9 608 1479 236 68 63 chr6 3072457 3072684 -146444353 - RMER19B LTR ERVK -656 246 51 9 608 680 228 15 0 chr6 3072684 3072820 -146444217 - RMER19B LTR ERVK -763 139 2 9 608 277 228 21 21 chr6 3073533 3073627 -146443410 + A-rich Low_complexity Low_complexity 2 95 0 9 608 6244 159 40 3 chr6 3075099 3076768 -146440269 - Lx LINE L1 0 6654 4922 9 608 13215 108 28 6 chr6 3076777 3079606 -146437431 + L1VL2 LINE L1 108 2989 -626 1 608 9572 177 143 6 chr6 3079681 3081848 -146435189 - L1_Mur2 LINE L1 -943 4934 2472 1 608 561 151 0 0 chr6 3081848 3081967 -146435070 + (CTGGGG)n Simple_repeat Simple_repeat 6 124 0 1 608 217 191 0 168 chr6 3081978 3082186 -146434851 + (CTGGGG)n Simple_repeat Simple_repeat 5 177 0 1 608 387 112 0 179 chr6 3082200 3082418 -146434619 + (CTGGGG)n Simple_repeat Simple_repeat 2 180 0 1 608 261 155 0 170 chr6 3082454 3082648 -146434389 + (CTGGGG)n Simple_repeat Simple_repeat 5 165 0 1 608 3234 26 0 0 chr6 3085451 3085797 -146431240 - ORR1A0 LTR MaLR 0 346 1 1 608 14771 54 12 2 chr6 3085797 3087571 -146429466 - ORR1A0-int LTR MaLR 0 1792 1 1 608 3199 29 0 0 chr6 3087571 3087917 -146429120 - ORR1A0 LTR MaLR 0 346 1 1 608 411 21 0 0 chr6 3092269 3092317 -146424720 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 608 550 276 68 113 chr6 3092560 3093047 -146423990 - RLTR12B LTR ERVK -61 507 43 1 608 785 275 31 95 chr6 3093148 3093474 -146423563 + MTEb LTR MaLR 73 377 -2 1 608 245 309 30 20 chr6 3094816 3094915 -146422122 - MurSatRep1 Unknown Unknown -1876 261 162 1 608 53 49 0 0 chr6 3095093 3095174 -146421863 + AT_rich Low_complexity Low_complexity 1 81 0 1 608 368 267 72 19 chr6 3095892 3096081 -146420956 + L1_Mus3 LINE L1 5019 5230 -916 1 608 939 132 113 21 chr6 3096191 3096468 -146420569 + L1_Mus3 LINE L1 6422 6638 0 1 608 939 323 262 20 chr6 3096468 3097006 -146420031 + L1_Mus3 LINE L1 6627 6633 -5 1 608 21 0 0 0 chr6 3097184 3097205 -146419832 + AT_rich Low_complexity Low_complexity 1 21 0 1 608 21 36 0 0 chr6 3098586 3098614 -146418423 + AT_rich Low_complexity Low_complexity 1 28 0 1 608 247 282 11 34 chr6 3098652 3098740 -146418297 + GA-rich Low_complexity Low_complexity 3 88 0 1 608 495 194 30 18 chr6 3098934 3099102 -146417935 + CT-rich Low_complexity Low_complexity 3 172 0 1 608 469 288 31 77 chr6 3099714 3099936 -146417101 + RMER10A LTR ERVL 1 212 -230 1 608 303 28 0 0 chr6 3100382 3100418 -146416619 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 608 289 360 116 21 chr6 3100875 3101065 -146415972 + B3 SINE B2 6 213 -3 1 608 397 242 131 36 chr6 3102079 3102216 -146414821 - RMER13A LTR ERVK 0 860 711 1 608 2708 183 45 23 chr6 3102216 3102731 -146414306 + RLTR11A2 LTR ERVK 2 527 0 1 608 462 208 222 47 chr6 3103339 3103551 -146413486 + MYSERV6-int LTR ERVK 6407 6655 -2304 1 608 22 0 0 0 chr6 3103810 3103832 -146413205 + AT_rich Low_complexity Low_complexity 1 22 0 1 608 429 259 8 57 chr6 3103940 3104063 -146412974 + B1_Mur3 SINE Alu 33 149 0 1 608 6814 104 57 8 chr6 3104212 3105264 -146411773 - Lx LINE L1 0 6654 5552 1 608 1115 28 21 0 chr6 3105344 3105485 -146411552 + (GAAAA)n Simple_repeat Simple_repeat 5 148 0 1 608 279 0 0 0 chr6 3105485 3105516 -146411521 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 1 608 1714 224 16 50 chr6 3105516 3106017 -146411020 + MYSERV6-int LTR ERVK 32 430 -1896 1 608 1020 260 64 68 chr6 3106044 3106482 -146410555 + MYSERV6-int LTR ERVK 479 914 -1412 1 608 228 328 57 32 chr6 3106490 3106613 -146410424 + RMER4A LTR ERVK 307 432 -34 1 608 717 220 16 53 chr6 3106614 3106980 -146410057 + MYSERV6-int LTR ERVK 1046 1256 -1070 1 608 2044 51 4 0 chr6 3106980 3107236 -146409801 - L1_Mus2 LINE L1 -581 5985 5729 1 608 1873 56 4 25 chr6 3107236 3107475 -146409562 + L1_Mus2 LINE L1 6333 6566 0 1 608 2652 229 108 44 chr6 3107492 3108380 -146408657 + MYSERV6-int LTR ERVK 8015 8959 0 1 608 1368 146 9 5 chr6 3108381 3108601 -146408436 + RLTR11A2 LTR ERVK 1 221 -306 1 608 2936 22 3 0 chr6 3108601 3108922 -146408115 - RLTRETN_Mm LTR ERVK 0 322 1 1 608 34669 2 0 1 chr6 3108922 3113771 -146403266 - MMETn-int LTR ERVK 0 4844 1 1 608 2827 12 3 0 chr6 3113771 3114092 -146402945 - RLTRETN_Mm LTR ERVK 0 322 1 1 608 1582 178 6 13 chr6 3114092 3114405 -146402632 + RLTR11A2 LTR ERVK 216 526 -1 1 608 207 0 0 0 chr6 3114779 3114802 -146402235 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 608 24 0 0 0 chr6 3114849 3114873 -146402164 + AT_rich Low_complexity Low_complexity 1 24 0 1 608 340 323 24 0 chr6 3116757 3116881 -146400156 + B1_Mur2 SINE Alu 21 147 -2 1 608 24 85 0 0 chr6 3118419 3118478 -146398559 + AT_rich Low_complexity Low_complexity 1 59 0 1 608 379 240 19 9 chr6 3119026 3119131 -146397906 - PB1D10 SINE Alu -1 116 11 1 608 3160 90 11 18 chr6 3119513 3119687 -146397350 - L1_Mus3 LINE L1 -16 6622 6452 1 608 4690 149 25 22 chr6 3119687 3120540 -146396497 + RLTR13A LTR ERVK 1 855 0 1 608 3160 90 11 18 chr6 3120540 3120817 -146396220 - L1_Mus3 LINE L1 -187 6451 6174 1 608 378 271 42 39 chr6 3120963 3121205 -146395832 - L1M3 LINE L1 -761 5086 4848 1 608 5587 54 4 0 chr6 3121511 3122198 -146394839 + L1_Mus2 LINE L1 5877 6566 0 1 608 215 326 102 0 chr6 3122588 3122686 -146394351 - B3A SINE B2 -33 165 58 1 608 1008 160 35 15 chr6 3123456 3123653 -146393384 + RLTR41 LTR ERV1 246 446 0 1 608 627 281 79 8 chr6 3124009 3124249 -146392788 + MER34A1 LTR ERV1 223 479 -108 1 608 1028 141 6 0 chr6 3124255 3124432 -146392605 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 1 608 218 32 32 0 chr6 3125005 3125036 -146392001 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 608 800 191 54 67 chr6 3125082 3125346 -146391691 + RLTRETN_Mm LTR ERVK 110 385 -8 1 608 374 0 22 0 chr6 3125346 3125392 -146391645 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 608 453 62 0 0 chr6 3125393 3125458 -146391579 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 1 608 1034 288 30 24 chr6 3125573 3125911 -146391126 - Lx6 LINE L1 -26 7434 7095 1 608 1564 184 52 0 chr6 3125957 3126322 -146390715 - L1_Mur2 LINE L1 -4236 1641 1258 1 608 512 214 36 58 chr6 3126614 3126753 -146390284 + B1_Mur2 SINE Alu 2 137 -12 1 608 1476 208 30 7 chr6 3126754 3127059 -146389978 - ORR1D2 LTR MaLR -7 363 52 1 608 429 20 0 0 chr6 3127064 3127114 -146389923 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 608 225 83 0 0 chr6 3127246 3127282 -146389755 + (T)n Simple_repeat Simple_repeat 1 36 0 1 608 684 234 20 14 chr6 3128817 3128964 -146388073 - B1F SINE Alu -1 148 1 1 608 289 266 54 67 chr6 3129293 3129442 -146387595 - BGLII_B LTR ERVK -28 413 267 1 608 23 0 0 0 chr6 3131587 3131610 -146385427 + AT_rich Low_complexity Low_complexity 1 23 0 1 608 558 180 108 0 chr6 3131744 3131855 -146385182 + B3 SINE B2 1 123 -93 1 608 446 153 35 0 chr6 3133661 3133746 -146383291 + B3 SINE B2 3 90 -126 1 608 542 236 50 19 chr6 3134475 3134635 -146382402 - MTC LTR MaLR 0 419 255 1 608 2110 111 12 12 chr6 3134646 3134983 -146382054 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 608 56042 29 9 7 chr6 3134985 3141444 -146375593 - IAPEz-int LTR ERVK -2 6479 8 1 608 2110 111 12 12 chr6 3141444 3141781 -146375256 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 608 599 280 15 30 chr6 3141788 3141987 -146375050 - MTC LTR MaLR -208 213 18 1 608 257 119 0 0 chr6 3142091 3142133 -146374904 + RLTR10-int LTR ERVK 217 258 -1729 1 608 572 242 8 0 chr6 3142166 3142298 -146374739 + B1_Mur2 SINE Alu 5 137 -12 1 608 964 114 6 6 chr6 3142298 3142457 -146374580 + (GAAAA)n Simple_repeat Simple_repeat 3 161 0 1 608 1853 153 62 15 chr6 3142470 3142808 -146374229 + ORR1B2 LTR MaLR 6 359 -8 1 608 234 128 0 0 chr6 3142812 3142851 -146374186 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 1 608 589 232 71 21 chr6 3143069 3143210 -146373827 + B1_Mur1 SINE Alu 2 149 0 1 608 300 309 85 0 chr6 3143364 3143458 -146373579 + B1F2 SINE Alu 22 123 -26 1 608 722 201 34 22 chr6 3144158 3144344 -146372693 + B3 SINE B2 2 191 -4 1 608 717 145 21 21 chr6 3144356 3144497 -146372540 + B1_Mur2 SINE Alu 9 149 0 1 608 560 261 7 35 chr6 3144814 3144957 -146372080 - B1_Mur4 SINE Alu -8 142 4 1 609 601 220 45 13 chr6 3146383 3146572 -146370465 - B3 SINE B2 0 198 3 1 609 677 292 26 0 chr6 3147631 3147826 -146369211 - ID_B1 SINE B4 -24 200 1 1 609 909 202 33 33 chr6 3147880 3148090 -146368947 + B3 SINE B2 1 210 -6 1 609 605 165 110 0 chr6 3148392 3148519 -146368518 - B1_Mus1 SINE Alu -7 141 1 1 609 7937 76 0 0 chr6 3148630 3150067 -146366970 - L1_Mus1 LINE L1 0 6567 5130 1 609 186 43 0 0 chr6 3150069 3150092 -146366945 + (T)n Simple_repeat Simple_repeat 1 23 0 1 609 865 285 98 46 chr6 3150099 3150640 -146366397 - L1ME1 LINE L1 -250 5929 5361 1 609 359 236 56 95 chr6 3150640 3150778 -146366259 - B3A SINE B2 -1 194 75 1 609 8088 17 0 1 chr6 3150778 3151677 -146365360 + SSU-rRNA_Hsa rRNA rRNA 331 1228 -641 1 609 1907 160 3 10 chr6 3152154 3152464 -146364573 - RLTR10E LTR ERVK -3 308 1 1 609 14221 94 7 6 chr6 3152495 3154732 -146362305 - MMERVK10C-int LTR ERVK 0 7680 5414 1 609 5118 97 13 3 chr6 3154732 3155435 -146361602 - MMERVK10C-int LTR ERVK -6028 1553 844 1 609 3811 168 70 67 chr6 3155431 3156354 -146360683 - MMERVK10C-int LTR ERVK -6657 924 1 1 609 1837 168 3 13 chr6 3156354 3156668 -146360369 - RLTR10E LTR ERVK 0 311 1 1 609 283 180 143 22 chr6 3156668 3156680 -146360357 - RLTR10E LTR ERVK -1449 21 6 1 609 419 248 56 98 chr6 3157307 3157450 -146359587 + ID_B1 SINE B4 76 212 -12 1 609 201 154 0 0 chr6 3157721 3157760 -146359277 + A-rich Low_complexity Low_complexity 1 39 0 1 609 2112 86 30 3 chr6 3158818 3159120 -146357917 - L1_Mus3 LINE L1 -6 6632 6323 1 609 2600 120 33 90 chr6 3159535 3160046 -146356991 - RLTR45 LTR ERVK 0 482 1 1 609 7949 136 11 13 chr6 3160046 3161448 -146355589 - RLTR45-int LTR ERVK -413 7804 6331 1 609 2527 62 12 15 chr6 3161537 3161864 -146355173 - RLTR45-int LTR ERVK -5596 1648 1323 1 609 346 306 48 48 chr6 3162118 3162324 -146354713 - SRV_MM-int LTR ERVK -3623 2544 2339 1 609 853 107 0 0 chr6 3162732 3162853 -146354184 - RLTR45-int LTR ERVK -6211 1033 913 1 609 1738 64 5 0 chr6 3162977 3163195 -146353842 - RLTR45-int LTR ERVK -6334 910 692 1 609 5034 68 40 18 chr6 3163544 3163964 -146353073 - RLTR45-int LTR ERVK -6552 692 282 1 609 333 0 0 0 chr6 3163964 3164001 -146353036 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1 609 5034 68 40 18 chr6 3164001 3164257 -146352780 - RLTR45-int LTR ERVK -6963 281 3 1 609 2535 105 141 25 chr6 3164257 3164689 -146352348 - RLTR45 LTR ERVK 0 482 1 1 609 21 0 0 0 chr6 3165767 3165788 -146351249 + AT_rich Low_complexity Low_complexity 1 21 0 1 609 236 268 28 14 chr6 3166259 3166331 -146350706 + ID4 SINE ID 3 75 -8 1 609 718 31 21 0 chr6 3166439 3166536 -146350501 + (TTATA)n Simple_repeat Simple_repeat 4 102 0 1 609 2170 164 36 10 chr6 3167286 3167679 -146349358 - MTC LTR MaLR -10 411 9 1 609 4298 144 26 41 chr6 3167687 3168441 -146348596 + RLTR14-int LTR ERV1 3797 4539 -778 1 609 2925 104 12 0 chr6 3168440 3168843 -146348194 + MurERV4_19-int LTR ERVK 1852 2259 -3521 1 609 304 333 19 37 chr6 3169060 3169275 -146347762 + RMER5 LTR ERV1 273 483 -51 1 609 338 312 48 8 chr6 3169281 3169407 -146347630 + ORR1E LTR MaLR 3 133 -226 1 609 251 157 0 19 chr6 3169417 3169469 -146347568 + GA-rich Low_complexity Low_complexity 6 56 0 1 609 1072 211 8 17 chr6 3169469 3169710 -146347327 + RLTR14-int LTR ERV1 5076 5314 -3 1 609 1881 205 16 3 chr6 3169732 3170108 -146346929 + RLTR14 LTR ERV1 2 382 0 1 609 234 0 0 0 chr6 3170300 3170326 -146346711 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 609 1066 95 0 0 chr6 3170326 3170463 -146346574 - B1_Mus2 SINE Alu -10 137 1 1 609 1854 224 132 36 chr6 3170484 3171168 -146345869 - L1_Rod LINE L1 -3645 2202 1448 2 609 279 0 0 0 chr6 3171168 3171199 -146345838 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 609 1854 224 132 36 chr6 3171199 3171236 -146345801 - L1_Rod LINE L1 -4400 1447 1412 2 609 1138 78 0 0 chr6 3171278 3171420 -146345617 - B1_Mus1 SINE Alu -6 142 1 2 609 250 194 16 0 chr6 3171425 3171487 -146345550 + ORR1E LTR MaLR 329 391 -28 1 609 1619 251 28 13 chr6 3172287 3172683 -146344354 - Lx5 LINE L1 -1 7049 6648 2 609 616 132 38 0 chr6 3172684 3172790 -146344247 + RLTR11A LTR ERVK 3 112 -416 2 609 532 224 12 42 chr6 3173053 3173221 -146343816 + RNLTR23 LTR ERVK 480 642 0 2 609 2157 146 29 12 chr6 3173221 3173636 -146343401 + RLTR11A LTR ERVK 107 528 0 2 609 705 126 0 0 chr6 3173837 3173948 -146343089 + (TC)n Simple_repeat Simple_repeat 2 112 0 2 609 1183 61 7 0 chr6 3173980 3174127 -146342910 - B1_Mus1 SINE Alu 0 148 1 2 609 33502 79 1 16 chr6 3174531 3179688 -146337349 + L1Md_F LINE L1 508 5586 -297 2 609 8187 52 1 3 chr6 3179688 3180685 -146336352 + L1Md_F2 LINE L1 5587 6581 -1 2 609 637 284 118 10 chr6 3181642 3181690 -146335347 + Lx8 LINE L1 6127 6191 -1282 2 609 674 0 25 0 chr6 3181690 3181771 -146335266 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 2 609 637 284 118 10 chr6 3181771 3182035 -146335002 + Lx8 LINE L1 6192 6472 -1001 2 609 976 95 0 20 chr6 3182127 3182278 -146334759 + B2_Mm2 SINE B2 1 148 -47 2 609 438 20 0 0 chr6 3182287 3182338 -146334699 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2 609 584 204 67 15 chr6 3182529 3182663 -146334374 + B1_Mus1 SINE Alu 6 146 -2 2 609 186 133 0 0 chr6 3182705 3182735 -146334302 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 2 609 566 258 137 59 chr6 3182791 3183046 -146333991 + B4A SINE B4 2 276 -16 2 609 367 306 38 13 chr6 3183065 3183224 -146333813 - MIR SINE MIR -48 214 52 2 609 522 0 0 0 chr6 3183309 3183367 -146333670 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2 609 990 219 94 16 chr6 3183979 3184234 -146332803 + MTEb LTR MaLR 1 275 -104 2 609 3046 179 20 5 chr6 3184244 3184806 -146332231 + RMER15 LTR ERVL 6 575 0 2 609 228 136 0 43 chr6 3184806 3184851 -146332186 + MTEb LTR MaLR 279 321 -58 2 609 1039 182 82 57 chr6 3184883 3185128 -146331909 - RLTR11A LTR ERVK -277 251 1 2 609 884 218 73 0 chr6 3185137 3185343 -146331694 + URR1B DNA MER1_type 5 225 0 2 609 751 355 51 24 chr6 3185343 3185678 -146331359 - MER45B DNA Tip100 -694 346 3 2 609 236 186 0 0 chr6 3185681 3185724 -146331313 + MER20 DNA MER1_type 177 219 0 2 609 472 279 132 75 chr6 3185890 3186112 -146330925 + RLTR9A LTR ERVK 1 253 -115 2 609 594 8 0 89 chr6 3186112 3186247 -146330790 + (GTTTG)n Simple_repeat Simple_repeat 2 124 0 2 609 1039 94 7 0 chr6 3186247 3186385 -146330652 - B1_Mus1 SINE Alu -8 140 2 2 609 472 279 132 75 chr6 3186385 3186509 -146330528 + RLTR9A LTR ERVK 254 367 -1 2 609 352 364 74 22 chr6 3186539 3186769 -146330268 + MLT1E2 LTR MaLR 50 291 -336 2 609 180 0 0 0 chr6 3186939 3186959 -146330078 + (A)n Simple_repeat Simple_repeat 1 20 0 2 609 2493 142 212 30 chr6 3187323 3187817 -146329220 + RLTR1D LTR ERV1 5 589 -16 2 609 1072 210 90 20 chr6 3188004 3188305 -146328732 + RLTR11A2 LTR ERVK 206 527 0 2 609 768 106 49 12 chr6 3188410 3188573 -146328464 + CT-rich Low_complexity Low_complexity 1 169 0 2 609 679 234 0 0 chr6 3188851 3188979 -146328058 + B1_Mur3 SINE Alu 1 128 -21 2 609 336 18 53 18 chr6 3189608 3189665 -146327372 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 609 16626 70 21 1 chr6 3190551 3193063 -146323974 - L1Md_F2 LINE L1 -381 6201 3632 2 609 4995 134 6 3 chr6 3193058 3194234 -146322803 - L1Md_F2 LINE L1 -4258 1625 446 2 609 439 261 0 9 chr6 3194429 3194545 -146322492 - B1_Mur1 SINE Alu -24 125 11 2 609 250 289 71 20 chr6 3194470 3194569 -146322468 - B4 SINE B4 -119 173 70 2 609 191 36 36 0 chr6 3196330 3196358 -146320679 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2 609 329 268 0 11 chr6 3196692 3196779 -146320258 + RSINE1 SINE B4 68 153 -12 2 609 1906 193 35 10 chr6 3198585 3198983 -146318054 - Lx4B LINE L1 -77 6981 6574 2 609 207 0 0 0 chr6 3198994 3199017 -146318020 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 609 1050 75 0 0 chr6 3199018 3199151 -146317886 - B1_Mus2 SINE Alu -10 137 5 2 609 2917 18 0 45 chr6 3199613 3199966 -146317071 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 609 31112 29 30 10 chr6 3199966 3203617 -146313420 + IAPEz-int LTR ERVK 8 3729 -2752 2 609 15082 15 3 0 chr6 3203600 3205253 -146311784 + IAPEz-int LTR ERVK 4824 6481 0 2 609 2917 18 0 45 chr6 3205253 3205606 -146311431 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 609 10858 91 2 7 chr6 3205819 3208069 -146308968 - L1_Mus1 LINE L1 0 6567 4331 2 609 486 0 0 0 chr6 3208189 3208243 -146308794 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 609 2086 191 58 15 chr6 3208252 3208715 -146308322 - Lx4B LINE L1 -2 7056 6574 2 609 992 155 2 0 chr6 3209518 3209697 -146307340 - B2_Mm2 SINE B2 -10 183 1 2 609 630 171 53 13 chr6 3210075 3210545 -146306492 + GA-rich Low_complexity Low_complexity 1 488 0 2 609 358 176 106 0 chr6 3210565 3210650 -146306387 + B3A SINE B2 1 94 -104 2 609 7195 68 1 0 chr6 3210668 3211562 -146305475 - L1_Mus1 LINE L1 0 6567 5673 2 609 257 238 160 0 chr6 3211745 3211837 -146305200 + B1F2 SINE Alu 6 111 -6 2 609 639 262 64 10 chr6 3212254 3212458 -146304579 + B3 SINE B2 1 215 -1 2 609 390 21 0 0 chr6 3212691 3212738 -146304299 + (T)n Simple_repeat Simple_repeat 1 47 0 2 609 755 253 171 45 chr6 3213628 3213897 -146303140 + Lx8 LINE L1 7171 7473 0 2 609 328 274 21 21 chr6 3214551 3214648 -146302389 - B1F SINE Alu -39 110 14 2 609 24 53 0 0 chr6 3217018 3217056 -146299981 + AT_rich Low_complexity Low_complexity 1 38 0 2 609 435 38 0 0 chr6 3217080 3217133 -146299904 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 2 609 3243 64 67 20 chr6 3217787 3218247 -146298790 - RLTR45 LTR ERVK 0 482 1 2 609 729 12 0 0 chr6 3218399 3218480 -146298557 - MMETn-int LTR ERVK -4763 81 1 2 609 2910 9 0 0 chr6 3218480 3218802 -146298235 - RLTRETN_Mm LTR ERVK 0 322 1 2 609 1796 126 102 24 chr6 3218992 3219365 -146297672 + RLTR9E LTR ERVK 6 407 -2 2 609 225 0 0 0 chr6 3219373 3219398 -146297639 + (TAA)n Simple_repeat Simple_repeat 2 26 0 2 609 5966 52 9 7 chr6 3219768 3220509 -146296528 + L1_Mus1 LINE L1 5822 6564 -3 2 609 510 244 229 27 chr6 3220938 3221313 -146295724 + L1MB2 LINE L1 5620 6070 -101 2 609 266 250 200 0 chr6 3221674 3221754 -146295283 - PB1D10 SINE Alu -21 96 1 2 609 253 140 17 17 chr6 3221922 3221980 -146295057 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 609 838 168 0 0 chr6 3222788 3222925 -146294112 - B1_Mus2 SINE Alu -10 137 1 2 609 231 114 0 0 chr6 3223060 3223095 -146293942 - URR1B DNA MER1_type 0 225 191 2 609 312 268 70 32 chr6 3223111 3223269 -146293768 + RLTR12B LTR ERVK 18 181 -347 2 609 456 320 31 35 chr6 3223277 3223536 -146293501 + RLTR15 LTR ERVK 60 317 -42 2 609 599 178 190 37 chr6 3223563 3223726 -146293311 - URR1B DNA MER1_type -37 188 1 2 609 414 231 100 27 chr6 3223966 3224118 -146292919 - RSINE1 SINE B4 0 165 2 2 609 23 54 0 0 chr6 3224165 3224202 -146292835 + AT_rich Low_complexity Low_complexity 1 37 0 2 609 247 302 78 48 chr6 3225225 3225392 -146291645 - MTE2b LTR MaLR -2 377 206 2 609 858 239 151 33 chr6 3225409 3225681 -146291356 - MTEa-int LTR MaLR -34 1546 1243 2 609 1477 323 112 70 chr6 3225684 3226697 -146290340 - MTEa-int LTR MaLR -524 1056 2 2 609 391 267 33 125 chr6 3226696 3226848 -146290189 - MTEa LTR MaLR 0 379 224 2 609 33739 73 1 3 chr6 3230147 3235437 -146281600 + L1Md_F2 LINE L1 218 5589 -297 2 609 8210 45 6 2 chr6 3235437 3236429 -146280608 + L1Md_F2 LINE L1 5590 6585 0 2 609 213 0 81 0 chr6 3236921 3236958 -146280079 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2 609 205 245 105 29 chr6 3237421 3237526 -146279511 - MIRm SINE MIR -3 273 161 2 609 290 269 109 100 chr6 3241033 3241512 -146275525 + RMER1C Other Other 393 875 -467 2 609 1816 155 6 14 chr6 3241638 3241997 -146275040 + IAPLTR1_Mm LTR ERVK 1 356 -11 2 609 304 274 120 91 chr6 3242006 3242456 -146274581 + RMER1C Other Other 413 875 -467 2 609 188 263 0 17 chr6 3243492 3243550 -146273487 + L2b LINE L2 3312 3368 -7 2 609 809 190 177 11 chr6 3244152 3244333 -146272704 + B3 SINE B2 2 212 -4 2 609 393 22 0 0 chr6 3244881 3244927 -146272110 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 609 477 0 0 0 chr6 3246057 3246110 -146270927 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 609 615 192 111 37 chr6 3246944 3247079 -146269958 - B1_Mur1 SINE Alu 0 149 5 2 609 372 71 0 0 chr6 3247134 3247190 -146269847 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 609 31 0 0 0 chr6 3247495 3247526 -146269511 + AT_rich Low_complexity Low_complexity 1 31 0 2 609 396 286 26 18 chr6 3247546 3247660 -146269377 - RSINE1 SINE B4 -40 125 11 2 609 987 188 27 0 chr6 3248123 3248309 -146268728 - B2_Mm2 SINE B2 -4 191 1 2 609 351 0 0 0 chr6 3248745 3248784 -146268253 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 609 330 336 104 7 chr6 3249781 3249916 -146267121 + L1MEe LINE L1 264 411 -4443 2 609 240 256 12 0 chr6 3249932 3250018 -146267019 + L1MEe LINE L1 826 912 -3942 2 609 465 336 52 40 chr6 3250061 3250389 -146266648 + L1ME3B LINE L1 5535 5866 -374 2 609 260 325 42 36 chr6 3250898 3251064 -146265973 - L2b LINE L2 -279 3096 2930 2 609 189 107 0 0 chr6 3251461 3251489 -146265548 + (ATG)n Simple_repeat Simple_repeat 2 29 0 2 609 452 272 56 12 chr6 3251926 3252086 -146264951 + MER20 DNA MER1_type 52 218 -1 2 609 559 299 130 29 chr6 3252120 3252396 -146264641 + Arthur1 DNA Tip100 368 671 -3276 2 609 377 286 56 43 chr6 3252463 3252624 -146264413 + RSINE1 SINE B4 3 165 0 2 609 207 316 61 75 chr6 3253928 3254075 -146262962 - MIRm SINE MIR -123 153 9 2 609 300 354 0 11 chr6 3256015 3256116 -146260921 - PB1D7 SINE Alu -6 114 15 2 609 215 214 0 0 chr6 3256623 3256665 -146260372 + (TTG)n Simple_repeat Simple_repeat 2 43 0 2 609 180 77 0 0 chr6 3256692 3256718 -146260319 + (ATTG)n Simple_repeat Simple_repeat 4 29 0 3 609 549 204 35 0 chr6 3256742 3256855 -146260182 - RSINE1 SINE B4 -46 119 3 3 609 297 0 0 0 chr6 3258841 3258874 -146258163 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 609 602 233 8 0 chr6 3259315 3259444 -146257593 - B1_Mur3 SINE Alu -9 140 11 3 609 254 125 21 0 chr6 3259713 3259761 -146257276 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 609 21 0 0 0 chr6 3260170 3260191 -146256846 + AT_rich Low_complexity Low_complexity 1 21 0 3 609 252 86 0 0 chr6 3260503 3260538 -146256499 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 609 25 0 0 0 chr6 3260631 3260656 -146256381 + AT_rich Low_complexity Low_complexity 1 25 0 3 609 298 143 0 31 chr6 3260797 3260862 -146256175 + GA-rich Low_complexity Low_complexity 3 65 0 3 609 243 246 178 7 chr6 3260892 3261032 -146256005 + B3A SINE B2 2 171 -45 3 609 390 57 0 0 chr6 3261145 3261198 -146255839 + (TGG)n Simple_repeat Simple_repeat 3 55 0 3 609 639 39 0 0 chr6 3262257 3262335 -146254702 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 609 393 22 0 0 chr6 3262335 3262380 -146254657 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 609 474 120 0 0 chr6 3262898 3262973 -146254064 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 609 192 200 0 0 chr6 3263703 3263753 -146253284 + CT-rich Low_complexity Low_complexity 1 50 0 3 609 201 293 40 13 chr6 3263872 3263948 -146253089 - MER5A DNA MER1_type -110 79 2 3 609 522 250 42 56 chr6 3264976 3265120 -146251917 - ETnERV2-int LTR ERVK -210 7196 7055 3 609 212 189 0 91 chr6 3266963 3267062 -146249975 + T-rich Low_complexity Low_complexity 2 91 0 3 609 353 230 193 73 chr6 3267489 3267681 -146249356 - B3 SINE B2 -1 215 1 3 609 2873 129 26 4 chr6 3268029 3268482 -146248555 - L1_Mus4 LINE L1 0 6636 6174 3 609 217 294 35 12 chr6 3268926 3269012 -146248025 + MIR3 SINE MIR 9 96 -112 3 609 579 158 0 0 chr6 3269597 3269724 -146247313 + (CAG)n Simple_repeat Simple_repeat 1 127 0 3 609 1632 124 15 58 chr6 3271703 3272029 -146245008 - RLTRETN_Mm LTR ERVK 0 322 11 3 609 2025 172 28 6 chr6 3272275 3272638 -146244399 + L1_Mm LINE L1 4601 4971 -912 3 609 1251 253 105 19 chr6 3272716 3273127 -146243910 - L1_Mur3 LINE L1 -6859 853 408 3 609 930 286 12 73 chr6 3273099 3273578 -146243459 - L1_Mur3 LINE L1 -7330 382 6 3 609 360 0 0 0 chr6 3273637 3273677 -146243360 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 609 488 331 14 0 chr6 3273690 3273838 -146243199 - B4A SINE B4 0 292 143 3 609 261 262 28 9 chr6 3273941 3274049 -146242988 - L1MDa LINE L1 -2864 3673 3564 3 609 494 276 88 134 chr6 3274107 3274266 -146242771 - L1MDa LINE L1 -4935 1698 1539 3 609 270 0 0 0 chr6 3274266 3274296 -146242741 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 3 609 494 276 88 134 chr6 3274296 3274613 -146242424 - L1MDa LINE L1 -5095 1538 1244 3 609 1490 79 5 5 chr6 3274980 3275183 -146241854 - L1_Mus2 LINE L1 -35 6531 6329 3 609 1084 194 148 3 chr6 3275183 3275467 -146241570 - RLTR11A2 LTR ERVK -202 325 1 3 609 456 302 47 16 chr6 3275919 3276363 -146240674 + L1MDa LINE L1 2263 2727 -3810 3 609 1307 195 61 31 chr6 3276366 3276798 -146240239 + RMER17C LTR ERVK 19 439 -519 3 610 443 275 65 39 chr6 3276815 3277046 -146239991 + L1MDa LINE L1 2736 2972 -3565 3 610 2889 197 83 21 chr6 3277083 3278265 -146238772 + L1_Mur3 LINE L1 549 1785 -4095 3 610 657 131 0 0 chr6 3278266 3278396 -146238641 + (TC)n Simple_repeat Simple_repeat 1 130 0 3 610 453 36 0 0 chr6 3278396 3278451 -146238586 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 610 180 0 0 0 chr6 3278451 3278470 -146238567 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 610 198 0 0 0 chr6 3278501 3278523 -146238514 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 610 2394 231 14 32 chr6 3278523 3279087 -146237950 - Lx5 LINE L1 -9 7041 6488 3 610 798 129 128 48 chr6 3279095 3279164 -146237873 + L1_Mur3 LINE L1 1771 1862 -4018 3 610 2783 98 27 7 chr6 3279164 3279576 -146237461 + BGLII_Mus LTR ERVK 1 420 -2 3 610 798 129 128 48 chr6 3279576 3279693 -146237344 + L1_Mur3 LINE L1 1863 1972 -3908 3 610 1006 218 5 11 chr6 3279779 3279969 -146237068 - MTC LTR MaLR 0 421 233 3 610 4410 95 11 6 chr6 3279969 3280617 -146236420 + L1_Mus3 LINE L1 5944 6594 -44 3 610 1488 163 145 25 chr6 3280617 3280982 -146236055 - RLTR9E LTR ERVK 0 409 1 3 610 44 35 0 0 chr6 3280994 3281052 -146235985 + AT_rich Low_complexity Low_complexity 1 58 0 3 610 1358 198 12 16 chr6 3281063 3281309 -146235728 - MTC LTR MaLR -174 247 3 3 610 4557 166 36 41 chr6 3281311 3282341 -146234696 + L1_Mur3 LINE L1 2087 3111 -2769 3 610 1011 229 10 0 chr6 3282347 3282548 -146234489 + Lx7 LINE L1 6241 6443 -1253 3 610 403 212 35 14 chr6 3282553 3282666 -146234371 - MTD LTR MaLR -74 333 220 3 610 374 269 122 47 chr6 3282666 3282986 -146234051 + L1_Mur3 LINE L1 4078 4452 -1691 3 610 231 302 8 8 chr6 3283031 3283151 -146233886 + L1_Mur3 LINE L1 5521 5640 -651 3 610 680 273 26 68 chr6 3283360 3283740 -146233297 - RLTR46 LTR ERVK 0 357 1 3 610 23148 201 42 32 chr6 3283740 3287110 -146229927 - IAPEY3-int LTR ERVK 0 7581 4110 3 610 200 209 52 113 chr6 3287110 3287207 -146229830 - L3 LINE CR1 -460 4029 3939 3 610 23148 201 42 32 chr6 3287207 3290955 -146226082 - IAPEY3-int LTR ERVK 0 4109 246 3 610 424 305 41 41 chr6 3291286 3291481 -146225556 - RLTR46 LTR ERVK 0 320 126 3 610 336 228 0 37 chr6 3291525 3291607 -146225430 - RLTR46 LTR ERVK -180 140 62 3 610 3415 35 2 0 chr6 3292136 3292531 -146224506 - MTA_Mm LTR MaLR 0 396 1 3 610 264 170 0 0 chr6 3293145 3293198 -146223839 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 610 573 76 0 0 chr6 3293197 3293276 -146223761 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 610 203 81 0 51 chr6 3293582 3293621 -146223416 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 3 610 473 322 32 53 chr6 3293711 3293901 -146223136 - B4A SINE B4 -105 187 2 3 610 364 284 0 64 chr6 3293980 3293998 -146223039 - RMER30 DNA MER1_type -1 201 184 3 610 2598 132 8 2 chr6 3293998 3294399 -146222638 + RLTR9D LTR ERVK 1 403 0 3 610 364 284 0 64 chr6 3294399 3294489 -146222548 - RMER30 DNA MER1_type -19 183 101 3 610 1155 160 49 69 chr6 3296267 3296555 -146220482 - Lx4B LINE L1 -4 7054 6773 3 610 2005 138 11 24 chr6 3296561 3296933 -146220104 + L1_Mur2 LINE L1 4190 4556 -1321 3 610 251 312 17 59 chr6 3296999 3297118 -146219919 - MLT1A0 LTR MaLR -4 404 248 3 610 21 0 0 0 chr6 3297539 3297560 -146219477 + AT_rich Low_complexity Low_complexity 1 21 0 3 610 1564 293 153 23 chr6 3297633 3298493 -146218544 + Lx8 LINE L1 6494 7465 -8 3 610 334 324 29 0 chr6 3298783 3298888 -146218149 + L1M2 LINE L1 4975 5082 -1061 3 610 3442 146 26 18 chr6 3299103 3300185 -146216852 + L1VL4 LINE L1 227 1316 -2243 3 610 11757 148 24 26 chr6 3300185 3303471 -146213566 + Lx LINE L1 3368 6654 0 3 610 1368 246 73 13 chr6 3303551 3303946 -146213091 + MTD LTR MaLR 1 419 0 3 610 244 306 81 16 chr6 3304232 3304355 -146212682 + MLT1A0 LTR MaLR 5 135 -230 3 610 616 258 44 125 chr6 3305061 3305468 -146211569 - MTE2a LTR MaLR -2 377 4 3 610 192 97 0 0 chr6 3306009 3306040 -146210997 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 3 610 871 312 73 10 chr6 3306732 3307127 -146209910 + Lx8 LINE L1 6533 6952 -521 3 610 1617 251 63 69 chr6 3307134 3307639 -146209398 + RLTR18B LTR ERVK 8 509 -3 3 610 207 0 0 0 chr6 3307642 3307665 -146209372 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 610 759 336 69 8 chr6 3307703 3308066 -146208971 + Lx8 LINE L1 6943 7327 -146 3 610 1073 93 0 0 chr6 3308240 3308379 -146208658 + B1_Mm SINE Alu 1 139 -8 3 610 269 261 44 26 chr6 3308389 3308503 -146208534 + L1MB8 LINE L1 5815 5930 -248 3 610 592 194 105 0 chr6 3308583 3308791 -146208246 + L1_Mur2 LINE L1 1000 1231 -5751 3 610 304 340 39 10 chr6 3308808 3308912 -146208125 + B1F1 SINE Alu 15 121 -28 3 610 19195 161 19 15 chr6 3309195 3313262 -146203775 - L1VL4 LINE L1 -697 5189 1108 3 610 25 0 0 0 chr6 3313264 3313289 -146203748 + AT_rich Low_complexity Low_complexity 1 25 0 3 610 28385 96 49 35 chr6 3313298 3315139 -146201898 - L1Md_F2 LINE L1 -27 6555 4639 3 610 345 259 43 77 chr6 3315139 3315256 -146201781 + RLTR9C LTR ERVK 98 210 -183 3 610 28385 96 49 35 chr6 3315256 3315534 -146201503 - L1Md_F2 LINE L1 -27 4638 4348 3 610 970 214 107 132 chr6 3315534 3315937 -146201100 - RLTR9C LTR ERVK 0 393 1 3 610 28385 95 13 50 chr6 3315937 3319968 -146197069 - L1Md_F2 LINE L1 -1536 4347 410 3 610 1492 159 19 2 chr6 3319970 3320332 -146196705 - L1VL4 LINE L1 -5512 823 451 3 610 237 180 0 20 chr6 3320500 3320551 -146196486 - L1VL4 LINE L1 -5843 492 443 3 610 180 0 0 0 chr6 3320628 3320648 -146196389 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 610 183 296 18 18 chr6 3321514 3321569 -146195468 - L2c LINE L2 -226 3161 3107 3 610 646 217 36 7 chr6 3322053 3322192 -146194845 - B3A SINE B2 -46 152 10 3 610 3297 108 8 2 chr6 3327631 3328111 -146188926 - L1_Mus3 LINE L1 -7 6631 6149 3 610 197 373 73 15 chr6 3328740 3328876 -146188161 - L2a LINE L2 -1 3425 3282 3 610 438 302 70 92 chr6 3329334 3329607 -146187430 + ORR1E LTR MaLR 91 357 -2 3 610 836 316 52 0 chr6 3329851 3330063 -146186974 + B4A SINE B4 68 290 -2 3 610 278 290 62 0 chr6 3330140 3330244 -146186793 - PB1D10 SINE Alu -8 109 1 3 610 265 301 128 34 chr6 3330305 3330453 -146186584 + L2a LINE L2 763 924 -2495 3 610 229 393 0 28 chr6 3330484 3330628 -146186409 + MLT1C LTR MaLR 20 159 -308 3 610 451 318 133 53 chr6 3330646 3331132 -146185905 + L2a LINE L2 2836 3371 -55 3 610 322 174 32 26 chr6 3331776 3331940 -146185097 + (TG)n Simple_repeat Simple_repeat 1 165 0 3 610 2001 154 176 125 chr6 3331948 3332307 -146184730 - RMER6C LTR ERVK 0 690 293 3 610 1155 54 0 13 chr6 3332307 3332456 -146184581 + B1_Mm SINE Alu 1 147 0 3 610 2001 154 176 125 chr6 3332456 3332750 -146184287 - RMER6C LTR ERVK -398 292 4 3 610 180 0 0 0 chr6 3333042 3333062 -146183975 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 610 751 112 16 0 chr6 3333178 3333303 -146183734 + (GAAAA)n Simple_repeat Simple_repeat 3 129 0 3 610 1089 23 0 0 chr6 3333420 3333548 -146183489 + (TC)n Simple_repeat Simple_repeat 1 128 0 3 610 219 69 0 0 chr6 3336026 3336055 -146180982 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 610 219 69 0 0 chr6 3337114 3337143 -146179894 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 3 610 267 54 0 0 chr6 3337254 3337291 -146179746 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 610 324 167 104 40 chr6 3337326 3337439 -146179598 - Lx9 LINE L1 -7 7637 7517 4 610 306 0 0 0 chr6 3337439 3337473 -146179564 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 610 630 237 226 3 chr6 3337473 3337639 -146179398 - Lx9 LINE L1 -128 7516 7314 4 610 2429 255 79 81 chr6 3337927 3338801 -146178236 - MTD-int LTR MaLR -386 872 1 4 610 333 252 56 62 chr6 3338803 3338947 -146178090 - MTD LTR MaLR -2 417 275 4 610 303 341 81 12 chr6 3339056 3339228 -146177809 + L1MC4 LINE L1 6905 7088 -954 4 610 654 167 200 7 chr6 3339804 3339949 -146177088 + MTB_Mm LTR MaLR 1 173 -234 4 610 257 204 41 0 chr6 3339927 3339976 -146177061 + MTB_Mm LTR MaLR 360 410 -9 4 610 1776 205 96 19 chr6 3340341 3340809 -146176228 + RLTR16 LTR ERVK 1 504 -1 4 610 15380 99 8 3 chr6 3341066 3344110 -146172927 + L1_Mus2 LINE L1 3496 6551 -15 4 610 279 0 0 0 chr6 3344110 3344141 -146172896 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 610 329 0 24 0 chr6 3344158 3344199 -146172838 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 610 1903 121 11 0 chr6 3344296 3344568 -146172469 - RMER19A LTR ERVK 0 737 463 4 610 594 235 0 0 chr6 3344580 3344699 -146172338 - MurERV4_19-int LTR ERVK -5172 608 490 4 610 393 169 0 0 chr6 3344743 3344814 -146172223 - MurERV4_19-int LTR ERVK -5469 311 241 4 610 390 121 0 0 chr6 3345300 3345366 -146171671 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 610 528 16 0 0 chr6 3345366 3345426 -146171611 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 610 526 347 82 29 chr6 3345801 3346044 -146170993 - B4A SINE B4 -35 257 2 4 610 292 283 10 71 chr6 3346123 3346141 -146170896 - RMER30 DNA MER1_type -1 201 184 4 610 2668 132 5 2 chr6 3346141 3346543 -146170494 + RLTR9D LTR ERVK 1 403 0 4 610 292 283 10 71 chr6 3346543 3346623 -146170414 - RMER30 DNA MER1_type -19 183 110 4 610 528 30 0 0 chr6 3346623 3346689 -146170348 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 610 971 153 143 35 chr6 3348005 3348208 -146168829 - URR1B DNA MER1_type 0 225 1 4 610 939 89 0 0 chr6 3348538 3348673 -146168364 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 610 1112 168 49 69 chr6 3349681 3349969 -146167068 - Lx4B LINE L1 -4 7054 6773 4 610 2024 138 11 14 chr6 3349975 3350343 -146166694 + L1_Mur2 LINE L1 4190 4556 -1321 4 610 285 295 17 59 chr6 3350409 3350528 -146166509 - MLT1A0 LTR MaLR -4 404 248 4 610 1673 289 148 8 chr6 3351041 3351771 -146165266 + Lx8 LINE L1 6494 7325 -148 4 610 325 324 29 0 chr6 3352185 3352290 -146164747 + L1M2 LINE L1 4975 5082 -1061 4 610 1700 216 26 49 chr6 3352505 3352958 -146164079 + L1VL4 LINE L1 227 669 -5633 4 610 1332 244 76 13 chr6 3353030 3353424 -146163613 + MTD LTR MaLR 1 419 0 4 610 4245 25 0 0 chr6 3353662 3354144 -146162893 - LTRIS_Mm LTR ERV1 0 482 1 4 610 255 280 73 27 chr6 3354210 3354320 -146162717 + MLT1A0 LTR MaLR 21 135 -230 4 610 2688 32 35 0 chr6 3354709 3355025 -146162012 - IAPLTR2b LTR ERVK 0 327 1 4 610 689 258 39 120 chr6 3355349 3355758 -146161279 - MTE2a LTR MaLR 0 379 4 4 610 192 97 0 0 chr6 3356299 3356330 -146160707 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 4 610 843 320 73 10 chr6 3357022 3357417 -146159620 + Lx8 LINE L1 6533 6952 -521 4 610 1506 245 83 69 chr6 3357424 3357919 -146159118 + RLTR18B LTR ERVK 8 509 -3 4 610 414 0 0 0 chr6 3358025 3358071 -146158966 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 610 210 37 0 0 chr6 3358102 3358129 -146158908 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 610 719 336 123 6 chr6 3358216 3358686 -146158351 + Lx8 LINE L1 6943 7467 -6 4 610 1091 102 0 0 chr6 3358754 3358901 -146158136 + B1_Mm SINE Alu 1 147 0 4 610 300 240 77 39 chr6 3358911 3359015 -146158022 + L1MB8 LINE L1 5811 5918 -260 4 610 207 0 0 0 chr6 3359015 3359038 -146157999 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 610 1471 207 51 84 chr6 3359124 3359633 -146157404 + L1_Mur2 LINE L1 1031 1547 -4333 4 610 667 120 0 33 chr6 3359633 3359754 -146157283 - L1_Mus2 LINE L1 -1 6565 6449 4 610 1471 212 37 200 chr6 3359754 3360301 -146156736 + L1_Mur2 LINE L1 1548 1958 -3922 4 610 293 152 0 0 chr6 3360296 3360355 -146156682 + L1_Mur2 LINE L1 2813 2871 -3009 4 610 193 57 28 28 chr6 3360378 3360414 -146156623 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 4 610 2022 184 29 16 chr6 3360416 3360903 -146156134 + L1_Mur2 LINE L1 4627 5119 -761 4 610 21999 166 24 18 chr6 3360889 3361407 -146155630 - L1VL4 LINE L1 -75 5811 5296 4 610 3473 62 0 17 chr6 3361407 3361867 -146155170 - L1Md_F2 LINE L1 0 6582 6131 4 610 21999 163 22 19 chr6 3361867 3366032 -146151005 - L1VL4 LINE L1 -591 5295 1108 4 610 26757 92 6 6 chr6 3366034 3370640 -146146397 - L1Md_F2 LINE L1 -1 6581 1978 4 610 194 0 39 0 chr6 3370640 3370666 -146146371 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 4 610 26757 91 4 7 chr6 3370666 3370748 -146146289 - L1Md_F2 LINE L1 -3906 1977 1891 4 610 248 245 136 36 chr6 3370756 3370866 -146146171 + L2a LINE L2 804 924 -2495 4 610 231 325 23 38 chr6 3370897 3371028 -146146009 + MLT1B LTR MaLR 20 148 -242 4 610 408 315 159 54 chr6 3371049 3371545 -146145492 + L2a LINE L2 2826 3371 -55 4 610 412 81 13 13 chr6 3372294 3372369 -146144668 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 610 2057 144 191 124 chr6 3372377 3372736 -146144301 - RMER6C LTR ERVK 0 690 283 4 610 1200 41 0 13 chr6 3372736 3372885 -146144152 + B1_Mm SINE Alu 1 147 0 4 610 2057 144 191 124 chr6 3372885 3373169 -146143868 - RMER6C LTR ERVK -408 282 4 4 610 252 0 0 0 chr6 3373461 3373489 -146143548 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 610 1094 105 0 6 chr6 3373599 3373772 -146143265 + (GAAAA)n Simple_repeat Simple_repeat 3 174 0 4 610 207 69 0 0 chr6 3373885 3373914 -146143123 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 610 764 53 0 18 chr6 3374315 3374429 -146142608 + L1Md_A LINE L1 6471 6582 0 4 610 207 0 0 0 chr6 3376518 3376541 -146140496 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 610 219 36 0 0 chr6 3377311 3377339 -146139698 + (T)n Simple_repeat Simple_repeat 1 28 0 4 610 219 69 0 0 chr6 3377636 3377665 -146139372 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 4 610 375 41 0 0 chr6 3377775 3377824 -146139213 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 610 331 180 89 16 chr6 3377859 3377971 -146139066 - Lx9 LINE L1 -7 7637 7517 4 610 291 28 0 0 chr6 3377971 3378007 -146139030 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 610 646 233 225 1 chr6 3378007 3378173 -146138864 - Lx9 LINE L1 -128 7516 7314 4 610 2458 254 78 81 chr6 3378461 3379336 -146137701 - MTD-int LTR MaLR -386 872 1 4 610 258 200 66 16 chr6 3379338 3379399 -146137638 - MTD LTR MaLR -2 417 354 4 610 1038 229 98 24 chr6 3379440 3379727 -146137310 + RLTR16 LTR ERVK 198 505 0 4 610 9537 113 3 1 chr6 3379976 3381486 -146135551 + L1_Mus3 LINE L1 3496 5008 -875 4 610 7590 52 9 0 chr6 3381500 3382698 -146134339 - L1Md_F2 LINE L1 0 6582 5374 4 610 926 34 0 0 chr6 3382699 3382818 -146134219 + L1_Mm LINE L1 3530 3648 -2235 4 610 5563 115 37 51 chr6 3382813 3384422 -146132615 + L1_Mus3 LINE L1 4993 6625 -13 4 610 1910 125 7 0 chr6 3384543 3384815 -146132222 - RMER19A LTR ERVK -1 736 463 4 610 654 210 0 0 chr6 3384827 3384946 -146132091 - MurERV4_19-int LTR ERVK -5172 608 490 4 610 1403 172 95 0 chr6 3384990 3385274 -146131763 - MurERV4_19-int LTR ERVK -5469 311 1 4 610 3660 186 93 59 chr6 3385281 3386123 -146130914 - RMER19B LTR ERVK -7 895 26 4 610 336 301 44 0 chr6 3386738 3386851 -146130186 + B4A SINE B4 7 124 -168 4 610 1963 151 20 197 chr6 3386927 3387512 -146129525 + RLTR45 LTR ERVK 1 482 0 4 610 366 23 0 0 chr6 3387811 3387854 -146129183 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 610 660 233 8 0 chr6 3387987 3388120 -146128917 + B3 SINE B2 2 135 -81 4 610 1162 226 111 33 chr6 3388130 3388552 -146128485 + RLTR26 LTR ERVK 6 493 -149 4 610 250 228 88 12 chr6 3388557 3388637 -146128400 - ID_B1 SINE B4 -16 208 123 4 610 2484 117 2 8 chr6 3388637 3389033 -146128004 + L1_Mus4 LINE L1 6241 6634 -2 4 610 1137 118 0 0 chr6 3389042 3389220 -146127817 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 4 610 939 219 14 58 chr6 3389232 3389455 -146127582 + MTC LTR MaLR 209 421 0 4 610 212 410 60 44 chr6 3389503 3389870 -146127167 - L2 LINE L2 -1395 2024 1652 4 610 28 48 0 0 chr6 3389972 3390014 -146127023 + AT_rich Low_complexity Low_complexity 1 42 0 4 610 281 150 0 81 chr6 3390037 3390124 -146126913 + A-rich Low_complexity Low_complexity 2 81 0 4 610 216 111 0 0 chr6 3390156 3390192 -146126845 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 610 306 307 23 0 chr6 3390207 3390295 -146126742 - Lx7 LINE L1 -398 7298 7209 4 610 3572 224 84 27 chr6 3390385 3390885 -146126152 - Lx6 LINE L1 -183 7277 6740 4 610 887 78 16 0 chr6 3390885 3391013 -146126024 + (TTTC)n Simple_repeat Simple_repeat 4 133 0 4 610 3572 224 84 27 chr6 3391013 3391425 -146125612 - Lx6 LINE L1 -721 6739 6313 4 610 513 0 0 0 chr6 3391425 3391482 -146125555 + (TTTTG)n Simple_repeat Simple_repeat 3 59 0 4 610 933 102 0 0 chr6 3391484 3391611 -146125426 - B1_Mus2 SINE Alu -12 135 9 4 610 409 202 41 114 chr6 3391507 3391630 -146125407 - MT2B LTR ERVL -337 264 151 4 610 6167 102 0 2 chr6 3391689 3392620 -146124417 + L1_Mm LINE L1 4219 5147 -736 4 610 1092 249 17 25 chr6 3392614 3392641 -146124396 + Lx7 LINE L1 5755 5781 -1915 4 610 3898 77 11 34 chr6 3392641 3393206 -146123831 + L1_Mus2 LINE L1 6015 6566 0 4 610 1092 249 17 25 chr6 3393206 3393537 -146123500 + Lx7 LINE L1 5782 6110 -1586 4 610 577 250 35 65 chr6 3394460 3394721 -146122316 - L1MA5 LINE L1 -6 6294 6042 4 610 505 147 9 9 chr6 3394890 3395000 -146122037 + (TATAA)n Simple_repeat Simple_repeat 5 114 0 4 610 446 214 0 7 chr6 3395046 3395192 -146121845 + (TATAA)n Simple_repeat Simple_repeat 5 149 0 4 610 624 309 94 19 chr6 3395339 3395712 -146121325 + Lx9 LINE L1 7055 7455 -189 4 610 558 0 0 0 chr6 3395994 3396056 -146120981 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 610 261 0 0 0 chr6 3397330 3397359 -146119678 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 610 484 223 22 121 chr6 3397360 3397584 -146119453 - Lx8 LINE L1 -9 7464 7263 4 610 406 283 152 0 chr6 3397641 3397779 -146119258 - Lx8 LINE L1 -184 7289 7131 4 610 3497 25 0 0 chr6 3398147 3398543 -146118494 + MTA_Mm LTR MaLR 1 396 0 4 610 9554 22 1 0 chr6 3398543 3399640 -146117397 + MTA_Mm-int LTR MaLR 1 1098 0 4 610 3484 25 0 0 chr6 3399640 3400036 -146117001 + MTA_Mm LTR MaLR 1 396 0 4 610 6546 81 85 1 chr6 3401097 3402366 -146114671 - L1_Mus3 LINE L1 -7 6631 5243 4 610 327 364 84 74 chr6 3402537 3402822 -146114215 + MLT1L LTR MaLR 23 310 -300 4 610 611 146 16 0 chr6 3402894 3403017 -146114020 - Lx2B LINE L1 -64 6936 6812 4 610 433 358 84 12 chr6 3403040 3403289 -146113748 + L2c LINE L2 2963 3229 -158 4 610 213 312 12 72 chr6 3403851 3403934 -146113103 + MIRm SINE MIR 72 149 -127 4 610 236 360 0 0 chr6 3404808 3404883 -146112154 + ID4 SINE ID 1 75 -8 5 610 244 227 30 15 chr6 3404887 3404954 -146112083 + A-rich Low_complexity Low_complexity 2 69 0 5 610 549 0 0 0 chr6 3405829 3405890 -146111147 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 610 1296 44 0 0 chr6 3406257 3406417 -146110620 + B2_Mm1a SINE B2 1 160 -33 5 610 324 0 0 0 chr6 3406417 3406453 -146110584 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 5 610 212 55 0 85 chr6 3407269 3407328 -146109709 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 5 611 2521 260 22 16 chr6 3408157 3408844 -146108193 + Lx7 LINE L1 6612 7302 -394 5 611 195 146 0 0 chr6 3408909 3408950 -146108087 + (T)n Simple_repeat Simple_repeat 1 41 0 5 611 21 36 0 0 chr6 3410499 3410527 -146106510 + AT_rich Low_complexity Low_complexity 1 28 0 5 611 1089 157 0 0 chr6 3410554 3410845 -146106192 + (TG)n Simple_repeat Simple_repeat 1 291 0 5 611 416 321 143 12 chr6 3410846 3410866 -146106171 - B4A SINE B4 0 292 273 5 611 1095 134 0 0 chr6 3410866 3411045 -146105992 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 611 416 321 143 12 chr6 3411045 3411098 -146105939 - B4A SINE B4 -20 272 222 5 611 270 0 0 0 chr6 3411098 3411128 -146105909 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 611 416 321 143 12 chr6 3411128 3411311 -146105726 - B4A SINE B4 -71 221 3 5 611 269 183 0 16 chr6 3411318 3411354 -146105683 + polypyrimidine Low_complexity Low_complexity 25 60 0 5 611 1284 89 0 0 chr6 3411354 3411534 -146105503 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 611 269 183 0 16 chr6 3411534 3411558 -146105479 + polypyrimidine Low_complexity Low_complexity 1 24 0 5 611 1368 101 0 2 chr6 3411558 3411965 -146105072 + (TTTC)n Simple_repeat Simple_repeat 1 405 0 5 611 213 299 133 10 chr6 3416777 3416875 -146100162 - MIR SINE MIR -64 198 89 5 611 356 310 30 10 chr6 3418263 3418356 -146098681 + RSINE1 SINE B4 54 149 -16 5 611 333 0 0 0 chr6 3418356 3418393 -146098644 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 611 275 366 42 14 chr6 3418485 3418629 -146098408 - MIR SINE MIR -10 252 105 5 611 453 254 74 111 chr6 3419592 3419618 -146097419 - B2_Mm2 SINE B2 -12 183 160 5 611 396 88 0 0 chr6 3419618 3419675 -146097362 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 611 684 246 98 19 chr6 3419675 3419838 -146097199 - B3A SINE B2 -36 159 1 5 611 360 0 0 0 chr6 3419946 3419986 -146097051 + (TTA)n Simple_repeat Simple_repeat 3 42 0 5 611 564 15 0 0 chr6 3421487 3421552 -146095485 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 611 378 0 0 0 chr6 3421552 3421593 -146095444 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 611 375 121 0 0 chr6 3423159 3423217 -146093820 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 611 360 309 46 46 chr6 3423541 3423738 -146093299 - MER3 DNA MER1_type -8 201 5 5 611 25 0 0 0 chr6 3423920 3423945 -146093092 + AT_rich Low_complexity Low_complexity 1 25 0 5 611 306 205 24 71 chr6 3424051 3424135 -146092902 - PB1D10 SINE Alu -1 116 37 5 611 983 136 0 0 chr6 3424159 3424299 -146092738 - B1_Mur4 SINE Alu -10 140 1 5 611 782 198 204 0 chr6 3424317 3424489 -146092548 - B3 SINE B2 -5 211 5 5 611 220 269 30 0 chr6 3424622 3424689 -146092348 - L2a LINE L2 -1 3425 3357 5 611 252 86 0 0 chr6 3426212 3426247 -146090790 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 611 444 135 0 0 chr6 3426769 3426843 -146090194 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 611 299 192 90 30 chr6 3427372 3427506 -146089531 + Lx9 LINE L1 7488 7629 -15 5 611 770 321 117 3 chr6 3428055 3428364 -146088673 - MER2 DNA MER2_type -1 344 1 5 611 200 204 0 0 chr6 3429659 3429703 -146087334 + (TCTCTG)n Simple_repeat Simple_repeat 4 47 0 5 611 221 304 29 0 chr6 3430417 3430486 -146086551 - B1F SINE Alu -1 148 78 5 611 483 18 0 0 chr6 3431429 3431485 -146085552 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 611 521 259 64 7 chr6 3431681 3431821 -146085216 + B1F SINE Alu 1 148 -1 5 611 467 338 7 7 chr6 3432535 3432684 -146084353 + RSINE1 SINE B4 4 152 -13 5 611 285 51 0 0 chr6 3432689 3432728 -146084309 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 611 258 32 0 0 chr6 3432775 3432806 -146084231 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 611 832 134 141 0 chr6 3433050 3433192 -146083845 - URR1B DNA MER1_type -63 162 1 5 611 243 259 0 53 chr6 3433955 3434012 -146083025 - tRNA-Ala-GCY_ tRNA tRNA -19 56 3 5 611 225 280 70 97 chr6 3434417 3434483 -146082554 + MT2B2 LTR ERVL 94 267 -317 5 611 506 175 139 46 chr6 3434483 3434591 -146082446 + B1_Mur4 SINE Alu 1 118 -32 5 611 393 102 0 0 chr6 3434591 3434650 -146082387 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 611 225 280 70 97 chr6 3434650 3434661 -146082376 + MT2B2 LTR ERVL 268 274 -310 5 611 422 309 229 24 chr6 3435700 3436380 -146080657 - L2a LINE L2 -84 3342 2508 5 611 314 331 143 50 chr6 3437854 3438175 -146078862 - L2 LINE L2 -404 3015 2665 5 611 205 357 53 18 chr6 3438399 3438513 -146078524 - L2 LINE L2 -905 2514 2397 5 611 439 187 121 0 chr6 3438928 3439019 -146078018 + RSINE1 SINE B4 4 105 -60 5 611 552 15 0 0 chr6 3439023 3439088 -146077949 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 611 252 272 25 0 chr6 3439597 3439678 -146077359 + CT-rich Low_complexity Low_complexity 2 84 0 5 611 399 21 0 0 chr6 3439680 3439728 -146077309 + (TCTCTG)n Simple_repeat Simple_repeat 2 49 0 5 611 251 285 0 0 chr6 3441300 3441314 -146075723 + ID_B1 SINE B4 77 137 -155 5 611 275 213 0 0 chr6 3441314 3441361 -146075676 + B1_Mus2 SINE Alu 6 52 -95 5 611 248 330 43 11 chr6 3441436 3441528 -146075509 - PB1D10 SINE Alu -19 101 7 5 611 47 33 0 0 chr6 3441791 3441852 -146075185 + AT_rich Low_complexity Low_complexity 1 61 0 5 611 467 230 117 16 chr6 3441852 3441980 -146075057 - B1_Mur1 SINE Alu 0 149 9 5 611 21 0 0 0 chr6 3442907 3442928 -146074109 + AT_rich Low_complexity Low_complexity 1 21 0 5 611 21 0 0 0 chr6 3443087 3443108 -146073929 + AT_rich Low_complexity Low_complexity 1 21 0 5 611 315 49 0 0 chr6 3443207 3443248 -146073789 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 611 294 29 0 0 chr6 3443248 3443282 -146073755 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 611 25 0 0 0 chr6 3445501 3445526 -146071511 + AT_rich Low_complexity Low_complexity 1 25 0 5 611 350 219 41 0 chr6 3446561 3446634 -146070403 + PB1D9 SINE Alu 32 107 -13 5 611 239 250 91 13 chr6 3447349 3447426 -146069611 + MIRm SINE MIR 95 177 -99 5 611 345 242 8 16 chr6 3447503 3447625 -146069412 + Lx7 LINE L1 7559 7679 -17 5 611 339 44 0 0 chr6 3450297 3450342 -146066695 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 611 237 259 56 56 chr6 3450467 3450557 -146066480 - L2a LINE L2 -1 3425 3336 5 611 195 263 49 73 chr6 3450607 3450689 -146066348 - L3 LINE CR1 -3641 848 769 5 611 206 319 74 42 chr6 3450669 3450764 -146066273 - L2a LINE L2 -257 3169 3072 5 611 499 348 150 39 chr6 3450884 3451632 -146065405 - L2a LINE L2 -593 2826 1996 5 611 276 279 0 14 chr6 3451640 3451709 -146065328 + CT-rich Low_complexity Low_complexity 4 71 0 5 611 33 0 0 0 chr6 3451731 3451764 -146065273 + AT_rich Low_complexity Low_complexity 1 33 0 5 611 513 162 133 0 chr6 3451796 3451901 -146065136 - B3 SINE B2 -96 120 2 5 611 216 318 26 52 chr6 3451902 3452018 -146065019 - L2a LINE L2 -1425 1994 1882 5 611 21 0 0 0 chr6 3453352 3453373 -146063664 + AT_rich Low_complexity Low_complexity 1 21 0 5 611 490 227 17 109 chr6 3453669 3453857 -146063180 + MT2B LTR ERVL 92 264 -320 5 611 1128 42 0 0 chr6 3453750 3453892 -146063145 + B1_Mus2 SINE Alu 6 147 0 5 611 200 188 0 0 chr6 3453892 3453924 -146063113 + polypurine Low_complexity Low_complexity 4 35 0 5 611 261 298 122 5 chr6 3456122 3456352 -146060685 - L1MA4A LINE L1 -379 5924 5685 5 611 3080 26 3 5 chr6 3457991 3458372 -146058665 - MTA_Mm LTR MaLR -16 380 1 5 611 25 31 0 0 chr6 3459024 3459056 -146057981 + AT_rich Low_complexity Low_complexity 1 32 0 5 611 200 79 53 0 chr6 3460532 3460570 -146056467 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 5 611 2503 150 46 82 chr6 3462998 3463144 -146053893 - RLTR24 LTR ERV1 -20 509 363 5 611 216 0 0 0 chr6 3463144 3463168 -146053869 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 611 2503 150 46 82 chr6 3463168 3463544 -146053493 - RLTR24 LTR ERV1 -167 362 6 5 611 234 0 0 0 chr6 3464417 3464443 -146052594 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 611 602 264 184 17 chr6 3464488 3464727 -146052310 - B4 SINE B4 -12 280 2 5 611 26 0 0 0 chr6 3464981 3465007 -146052030 + AT_rich Low_complexity Low_complexity 1 26 0 5 611 21 0 0 0 chr6 3465029 3465050 -146051987 + AT_rich Low_complexity Low_complexity 1 21 0 5 611 641 285 26 0 chr6 3465137 3465288 -146051749 + RSINE1 SINE B4 3 157 -8 5 611 353 278 160 16 chr6 3465441 3465635 -146051402 + Lx8 LINE L1 7182 7403 -70 5 611 428 296 58 4 chr6 3465707 3465843 -146051194 - PB1D10 SINE Alu 0 149 1 5 611 21 57 0 0 chr6 3466585 3466620 -146050417 + AT_rich Low_complexity Low_complexity 1 35 0 5 611 22 70 0 0 chr6 3467035 3467078 -146049959 + AT_rich Low_complexity Low_complexity 1 43 0 5 611 621 208 203 23 chr6 3468072 3468249 -146048788 - URR1A DNA MER1_type -7 219 11 5 611 203 244 0 0 chr6 3469364 3469405 -146047632 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 611 413 263 214 43 chr6 3469561 3469795 -146047242 + B4A SINE B4 3 276 -16 5 611 424 146 207 0 chr6 3470525 3470607 -146046430 + PB1D9 SINE Alu 21 119 -1 5 611 580 105 0 37 chr6 3470608 3470717 -146046320 + (GAAAA)n Simple_repeat Simple_repeat 1 105 0 5 611 249 180 0 0 chr6 3470821 3470871 -146046166 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 611 207 0 0 0 chr6 3470868 3470891 -146046146 + (TTA)n Simple_repeat Simple_repeat 1 23 0 5 611 8125 116 23 7 chr6 3470891 3472102 -146044935 - Lx4A LINE L1 -3 7055 5825 6 611 576 298 38 6 chr6 3472409 3472568 -146044469 + B3A SINE B2 2 165 -33 6 611 21 0 0 0 chr6 3472598 3472619 -146044418 + AT_rich Low_complexity Low_complexity 1 21 0 6 611 180 125 0 0 chr6 3474219 3474251 -146042786 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 6 611 808 74 189 0 chr6 3474251 3474373 -146042664 - B1_Mus1 SINE Alu -2 146 2 6 611 21 57 0 0 chr6 3474723 3474758 -146042279 + AT_rich Low_complexity Low_complexity 1 35 0 6 611 480 268 40 20 chr6 3476397 3476599 -146040438 - L1MA7 LINE L1 -29 6262 6057 6 611 243 0 0 0 chr6 3476859 3476886 -146040151 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 611 533 129 6 58 chr6 3476903 3476925 -146040112 + C-rich Low_complexity Low_complexity 128 149 0 6 611 612 40 0 0 chr6 3476925 3477000 -146040037 + (TTCTC)n Simple_repeat Simple_repeat 3 77 0 6 611 533 129 6 58 chr6 3477000 3477133 -146039904 + C-rich Low_complexity Low_complexity 3 127 0 6 611 410 317 9 9 chr6 3477133 3477258 -146039779 - B1_Mur1 SINE Alu -21 128 4 6 611 390 57 0 0 chr6 3478882 3478935 -146038102 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 611 581 62 31 10 chr6 3479743 3479841 -146037196 - L1Md_F2 LINE L1 0 6582 6483 6 611 219 139 0 0 chr6 3481494 3481530 -146035507 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 611 25 31 0 0 chr6 3483119 3483151 -146033886 + AT_rich Low_complexity Low_complexity 1 32 0 6 611 269 176 174 14 chr6 3483810 3483879 -146033158 + PB1D10 SINE Alu 36 115 -2 6 611 985 71 0 14 chr6 3484091 3484234 -146032803 - L1_Mus1 LINE L1 0 6567 6427 6 611 2056 89 29 0 chr6 3484234 3484548 -146032489 + L1_Mm LINE L1 4412 4734 -1149 6 611 1976 178 97 28 chr6 3484683 3485156 -146031881 - RLTR19C LTR ERVK 0 506 1 6 611 1073 163 19 29 chr6 3485500 3485708 -146031329 - ORR1C1 LTR MaLR -5 373 168 6 611 2171 153 150 7 chr6 3485724 3486171 -146030866 - RMER20A LTR ERVK -5 511 1 6 611 955 163 0 94 chr6 3486171 3486374 -146030663 - ORR1C1 LTR MaLR -200 184 1 6 611 226 362 66 20 chr6 3486406 3486558 -146030479 - L2a LINE L2 -171 3255 3097 6 611 4046 68 0 13 chr6 3488702 3489272 -146027765 - L1Md_F2 LINE L1 0 6582 6055 6 611 28 29 0 0 chr6 3489287 3489322 -146027715 + AT_rich Low_complexity Low_complexity 1 35 0 6 611 3203 43 5 8 chr6 3490243 3490640 -146026397 + MTA_Mm LTR MaLR 1 396 0 6 611 344 301 29 0 chr6 3491388 3491491 -146025546 - PB1D10 SINE Alu -11 106 1 6 611 25 0 0 0 chr6 3491696 3491721 -146025316 + AT_rich Low_complexity Low_complexity 1 25 0 6 611 392 339 43 9 chr6 3492902 3493018 -146024019 - PB1 SINE Alu -7 120 1 6 611 357 262 167 26 chr6 3493048 3493275 -146023762 - L1M5 LINE L1 -884 5262 5004 6 611 3691 44 31 0 chr6 3496188 3496646 -146020391 - L1Md_F3 LINE L1 -14 6570 6099 6 611 496 17 0 0 chr6 3496646 3496706 -146020331 + L1Md_F3 LINE L1 6039 6098 -486 6 611 325 299 41 0 chr6 3496752 3496849 -146020188 + B4A SINE B4 1 101 -191 6 611 1541 203 79 35 chr6 3496917 3497285 -146019752 - ORR1C2 LTR MaLR 0 384 1 6 611 4583 226 78 28 chr6 3497287 3498591 -146018446 - ORR1C2-int LTR MaLR -2 1368 1 6 611 1727 175 83 22 chr6 3498591 3498639 -146018398 - ORR1C2 LTR MaLR 0 384 334 6 611 3308 40 5 5 chr6 3498639 3499043 -146017994 + L1Md_F2 LINE L1 6176 6579 -3 6 611 1727 175 83 22 chr6 3499043 3499356 -146017681 - ORR1C2 LTR MaLR -51 333 2 6 611 36 62 0 0 chr6 3500374 3500438 -146016599 + AT_rich Low_complexity Low_complexity 1 64 0 1 611 571 291 19 32 chr6 3500720 3500876 -146016161 - B3 SINE B2 0 216 63 2 611 537 297 107 80 chr6 3501569 3501895 -146015142 - MLT1A0 LTR MaLR -12 353 19 3 611 23 54 0 0 chr6 3502198 3502235 -146014802 + AT_rich Low_complexity Low_complexity 1 37 0 4 611 1458 128 28 121 chr6 3502583 3502938 -146014099 - RLTRETN_Mm LTR ERVK 0 322 1 5 611 203 270 149 0 chr6 3503674 3503748 -146013289 + MIRb SINE MIR 94 178 -90 6 611 342 98 0 0 chr6 3504237 3504288 -146012749 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 611 21 0 0 0 chr6 3504518 3504539 -146012498 + AT_rich Low_complexity Low_complexity 1 21 0 8 611 376 283 86 25 chr6 3504568 3504731 -146012306 - B2_Mm2 SINE B2 -21 174 2 9 611 207 0 0 0 chr6 3505650 3505673 -146011364 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 611 411 347 26 46 chr6 3506111 3506262 -146010775 - RSINE1 SINE B4 -15 150 3 1 611 21 0 0 0 chr6 3506332 3506353 -146010684 + AT_rich Low_complexity Low_complexity 1 21 0 1 611 471 35 0 0 chr6 3506930 3506987 -146010050 + (TCC)n Simple_repeat Simple_repeat 2 58 0 1 611 2901 181 88 133 chr6 3507008 3507943 -146009094 + RLTR13D6 LTR ERVK 10 902 0 1 611 441 170 19 19 chr6 3507943 3508051 -146008986 + CT-rich Low_complexity Low_complexity 2 109 0 1 611 311 331 91 28 chr6 3508058 3508201 -146008836 - HAL1-3A_ME LINE L1 -423 2435 2284 1 611 247 182 0 43 chr6 3508201 3508270 -146008767 + C-rich Low_complexity Low_complexity 5 70 0 1 611 519 143 0 62 chr6 3508285 3508397 -146008640 - L1_Mur1 LINE L1 -1182 4704 4600 1 611 5881 119 25 3 chr6 3508386 3509360 -146007677 + L1_Mur1 LINE L1 3595 4589 -1288 1 611 704 254 46 31 chr6 3510369 3510629 -146006408 - L1M4 LINE L1 -571 5603 5340 1 611 264 351 25 83 chr6 3510709 3510830 -146006207 - PB1D10 SINE Alu -2 115 2 2 611 1046 254 82 29 chr6 3510862 3511316 -146005721 - L1_Mur3 LINE L1 -1173 4707 4230 2 611 859 234 30 5 chr6 3513059 3513257 -146003780 - B3 SINE B2 -12 204 2 2 611 26 30 0 0 chr6 3513570 3513603 -146003434 + AT_rich Low_complexity Low_complexity 1 33 0 2 611 6429 73 25 1 chr6 3513607 3514513 -146002524 - L1_Mus4 LINE L1 -11 6625 5698 2 611 1904 156 72 0 chr6 3516046 3516393 -146000644 - ORR1C1 LTR MaLR -6 372 1 2 611 181 254 29 15 chr6 3516545 3516613 -146000424 + MIR SINE MIR 74 142 -120 2 611 543 180 58 29 chr6 3516803 3516906 -146000131 - B1_Mur4 SINE Alu -7 143 38 2 611 22 0 0 0 chr6 3517909 3517931 -145999106 + AT_rich Low_complexity Low_complexity 1 22 0 2 611 257 239 16 71 chr6 3518391 3518517 -145998520 - Lx9 LINE L1 0 7644 7526 2 611 364 147 13 13 chr6 3518518 3518594 -145998443 + GA-rich Low_complexity Low_complexity 1 76 0 3 611 442 307 64 0 chr6 3518839 3518979 -145998058 + RSINE1 SINE B4 6 154 -11 3 611 844 178 0 0 chr6 3519092 3519227 -145997810 - B1_Mus1 SINE Alu -12 136 2 3 611 511 273 112 0 chr6 3520539 3520799 -145996238 + L1_Rod LINE L1 561 849 -6323 3 611 350 335 53 58 chr6 3522103 3522309 -145994728 - L3 LINE CR1 -10 4479 4275 3 611 185 161 33 44 chr6 3522806 3522897 -145994140 + (TA)n Simple_repeat Simple_repeat 1 90 0 3 611 326 302 148 58 chr6 3524310 3524567 -145992470 - L1MC LINE L1 -2330 5552 5273 3 611 212 268 28 14 chr6 3524588 3524660 -145992377 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 3 611 216 286 0 0 chr6 3524610 3524659 -145992378 + (CATA)n Simple_repeat Simple_repeat 4 52 0 3 611 353 127 0 60 chr6 3526720 3526804 -145990233 + T-rich Low_complexity Low_complexity 1 79 0 3 611 2827 67 42 52 chr6 3526809 3527217 -145989820 - L1_Mus2 LINE L1 -3 6563 6160 4 611 407 177 16 24 chr6 3527429 3527556 -145989481 + CT-rich Low_complexity Low_complexity 3 128 0 4 611 38044 26 1 6 chr6 3529070 3535249 -145981788 - L1Md_T LINE L1 -1 6581 441 4 611 314 248 96 25 chr6 3536053 3536210 -145980827 + L1M5 LINE L1 2758 2925 -3221 4 611 322 276 60 33 chr6 3536548 3536698 -145980339 + L1M5 LINE L1 5551 5704 -475 4 611 363 234 0 31 chr6 3537801 3537898 -145979139 - HAL1-2a_MD LINE L1 -529 2495 2402 4 611 203 196 0 18 chr6 3538336 3538393 -145978644 + (TTTG)n Simple_repeat Simple_repeat 4 59 0 4 611 246 238 279 23 chr6 3538494 3538580 -145978457 + PB1D10 SINE Alu 3 110 -7 4 76 339 324 177 5 chr6 3538918 3539104 -145977933 - MER2 DNA MER2_type -125 220 3 4 612 2050 122 47 62 chr6 3540517 3540902 -145976135 - ORR1C2 LTR MaLR -2 382 4 4 612 472 266 18 0 chr6 3540950 3541063 -145975974 - PB1D10 SINE Alu -2 115 1 4 612 182 150 250 0 chr6 3541358 3541398 -145975639 + L3 LINE CR1 3842 3891 -598 5 612 958 250 29 0 chr6 3542816 3543020 -145974017 - B4 SINE B4 -1 291 82 5 612 731 222 102 36 chr6 3543494 3543690 -145973347 + B3 SINE B2 2 210 -6 5 612 24 0 0 0 chr6 3545955 3545979 -145971058 + AT_rich Low_complexity Low_complexity 1 24 0 5 612 446 350 53 29 chr6 3546179 3546385 -145970652 - MLT1A0 LTR MaLR -66 299 89 5 612 1063 261 91 33 chr6 3547590 3548017 -145969020 + Lx6 LINE L1 7004 7455 -5 5 612 21 0 0 0 chr6 3548393 3548414 -145968623 + AT_rich Low_complexity Low_complexity 1 21 0 5 612 684 122 40 13 chr6 3549228 3549378 -145967659 + CT-rich Low_complexity Low_complexity 1 154 0 5 612 504 86 0 0 chr6 3549375 3549445 -145967592 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 5 612 210 171 0 0 chr6 3549504 3549545 -145967492 + GA-rich Low_complexity Low_complexity 2 42 0 5 612 300 259 11 45 chr6 3550845 3550934 -145966103 + ID_B1 SINE B4 130 215 -9 6 612 225 0 0 0 chr6 3551336 3551361 -145965676 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 612 1072 68 0 0 chr6 3551361 3551494 -145965543 - B1_Mus2 SINE Alu -13 134 2 6 612 699 260 70 15 chr6 3552013 3552212 -145964825 + B3 SINE B2 1 210 -6 6 612 27 0 0 0 chr6 3553499 3553526 -145963511 + AT_rich Low_complexity Low_complexity 1 27 0 6 612 2800 58 0 3 chr6 3553601 3553948 -145963089 - ORR1A1 LTR MaLR 0 346 1 6 612 13185 88 18 5 chr6 3554935 3554967 -145962070 + L1Md_F2 LINE L1 1850 1881 -4002 6 612 3249 39 15 0 chr6 3554967 3555357 -145961680 - MTA_Mm LTR MaLR 0 396 1 6 612 24132 84 26 9 chr6 3555357 3559002 -145958035 + L1Md_F2 LINE L1 1877 5586 -297 6 612 6806 84 35 4 chr6 3559002 3559955 -145957082 + L1Md_F2 LINE L1 5587 6568 -14 6 612 186 43 0 0 chr6 3559963 3559986 -145957051 + (GAAA)n Simple_repeat Simple_repeat 3 25 0 6 612 216 0 0 0 chr6 3560527 3560551 -145956486 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 612 250 200 0 68 chr6 3561402 3561461 -145955576 - RLTR17 LTR ERVK 0 692 638 7 612 1673 157 75 20 chr6 3561440 3561848 -145955189 - RLTR31A_Mm LTR ERVK -135 422 1 7 612 241 298 210 61 chr6 3562460 3562836 -145954201 - L2 LINE L2 -417 3002 2571 7 612 37 39 0 0 chr6 3564438 3564489 -145952548 + AT_rich Low_complexity Low_complexity 1 51 0 7 612 33197 77 12 0 chr6 3564493 3569876 -145947161 + L1Md_F2 LINE L1 476 5928 -654 7 612 1524 36 42 0 chr6 3569876 3570068 -145946969 + L1Md_F2 LINE L1 6373 6572 -10 7 612 695 242 0 75 chr6 3570074 3570109 -145946928 - B3A SINE B2 -45 153 129 7 612 825 28 27 34 chr6 3570109 3570255 -145946782 + (GAGAA)n Simple_repeat Simple_repeat 5 149 0 7 612 695 242 0 75 chr6 3570255 3570380 -145946657 - B3A SINE B2 -70 128 5 7 612 321 26 0 0 chr6 3571317 3571355 -145945682 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 7 612 706 149 57 8 chr6 3571357 3571479 -145945558 - B1_Mus2 SINE Alu -1 146 19 7 612 198 71 0 0 chr6 3571481 3571509 -145945528 + (CCA)n Simple_repeat Simple_repeat 1 28 0 7 612 432 111 0 0 chr6 3571509 3571581 -145945456 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 612 29 0 0 0 chr6 3571657 3571686 -145945351 + AT_rich Low_complexity Low_complexity 1 29 0 8 612 345 93 0 0 chr6 3571767 3571821 -145945216 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 612 336 175 0 0 chr6 3572025 3572088 -145944949 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 612 1708 214 36 82 chr6 3572179 3572276 -145944761 - RLTR16 LTR ERVK -12 493 403 8 612 2952 49 5 74 chr6 3572276 3572693 -145944344 - RLTR10 LTR ERVK -2 388 1 8 612 1708 214 36 82 chr6 3572693 3572899 -145944138 - RLTR16 LTR ERVK -103 402 207 8 612 2378 96 10 81 chr6 3572899 3573284 -145943753 + RLTR10D LTR ERVK 1 358 -1 8 612 1708 214 36 82 chr6 3573284 3573457 -145943580 - RLTR16 LTR ERVK -299 206 38 8 612 205 234 188 47 chr6 3573560 3573645 -145943392 + L4 LINE RTE 1530 1626 -403 8 612 184 182 294 43 chr6 3573932 3574024 -145943013 + MIR SINE MIR 129 243 -19 8 612 26 0 0 0 chr6 3574191 3574217 -145942820 + AT_rich Low_complexity Low_complexity 1 26 0 8 612 3503 58 22 9 chr6 3574217 3574666 -145942371 - L1_Mus1 LINE L1 -3 6564 6110 9 612 21 0 0 0 chr6 3575505 3575526 -145941511 + AT_rich Low_complexity Low_complexity 1 21 0 9 612 2052 209 87 17 chr6 3575929 3576402 -145940635 + RMER20A LTR ERVK 11 516 0 9 612 22 0 0 0 chr6 3576646 3576668 -145940369 + AT_rich Low_complexity Low_complexity 1 22 0 9 612 6504 27 12 3 chr6 3577208 3577985 -145939052 + L1Md_F3 LINE L1 5799 6582 -2 9 612 1197 274 98 6 chr6 3578396 3578734 -145938303 + MTEb LTR MaLR 6 374 -5 9 612 483 18 0 0 chr6 3579503 3579559 -145937478 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 612 279 0 0 0 chr6 3579559 3579589 -145937448 + (GA)n Simple_repeat Simple_repeat 1 31 0 9 612 260 242 0 0 chr6 3579590 3579652 -145937385 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 612 342 0 0 0 chr6 3579653 3579691 -145937346 + (GA)n Simple_repeat Simple_repeat 2 39 0 9 612 247 279 111 81 chr6 3579707 3579879 -145937158 + MIRb SINE MIR 78 254 -14 1 612 955 285 45 48 chr6 3580058 3580478 -145936559 + BGLII_B LTR ERVK 1 419 -22 1 612 647 270 63 63 chr6 3581426 3581616 -145935421 + B3 SINE B2 3 192 -24 1 612 987 279 139 66 chr6 3582187 3582687 -145934350 + MLT2B4 LTR ERVL 163 702 -16 1 612 387 0 0 0 chr6 3582691 3582734 -145934303 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1 612 216 0 0 0 chr6 3582735 3582759 -145934278 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 612 936 227 34 19 chr6 3584696 3584903 -145932134 + MTD LTR MaLR 1 210 -209 1 612 829 150 60 0 chr6 3584905 3585038 -145931999 + B1_Mur4 SINE Alu 1 141 -9 1 612 200 211 0 0 chr6 3585048 3585086 -145931951 + A-rich Low_complexity Low_complexity 3 40 0 1 612 434 249 29 113 chr6 3585088 3585316 -145931721 + MTD LTR MaLR 181 404 -15 1 612 27 29 0 0 chr6 3585936 3585970 -145931067 + AT_rich Low_complexity Low_complexity 1 34 0 1 612 231 36 0 0 chr6 3586917 3586945 -145930092 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 612 302 227 55 0 chr6 3587027 3587137 -145929900 + Lx5 LINE L1 6935 7050 0 1 612 1224 28 14 0 chr6 3587185 3587330 -145929707 + B1_Mm SINE Alu 1 147 0 1 612 2779 120 21 0 chr6 3587393 3587826 -145929211 - L1_Mur2 LINE L1 -36 5841 5400 1 612 1388 127 0 0 chr6 3587862 3588075 -145928962 - L1_Mus4 LINE L1 -4 6632 6420 1 612 1960 150 96 6 chr6 3588082 3588445 -145928592 - RMER6C LTR ERVK -291 399 4 1 612 804 227 93 43 chr6 3588482 3588827 -145928210 - L1M3 LINE L1 -1364 4776 4415 1 612 656 183 99 0 chr6 3589099 3589230 -145927807 + B1_Mur2 SINE Alu 1 144 -5 1 612 477 235 29 0 chr6 3589607 3589709 -145927328 - B3 SINE B2 -5 211 107 1 612 3565 139 117 5 chr6 3589709 3590314 -145926723 - RLTR33 LTR ERVK -2 676 4 1 612 592 182 0 83 chr6 3590467 3590587 -145926450 - B3 SINE B2 -106 110 1 1 612 252 86 0 0 chr6 3590594 3590629 -145926408 + (T)n Simple_repeat Simple_repeat 1 35 0 1 612 38721 16 2 6 chr6 3590775 3597337 -145919700 - L1Md_A LINE L1 0 6582 53 1 612 2137 176 52 6 chr6 3600015 3600381 -145916656 - MTC LTR MaLR 0 421 39 1 612 2985 15 3 0 chr6 3600381 3600717 -145916320 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 612 53060 19 15 7 chr6 3600717 3607108 -145909929 - IAPEz-int LTR ERVK 0 6481 38 1 612 2985 15 3 0 chr6 3607121 3607457 -145909580 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 612 239 114 0 0 chr6 3607457 3607492 -145909545 - MTC LTR MaLR -377 44 10 1 612 319 309 148 45 chr6 3607535 3607826 -145909211 + MLT1A LTR MaLR 33 353 -21 1 612 358 348 6 37 chr6 3607835 3607999 -145909038 + RSINE1 SINE B4 3 161 -4 1 612 359 258 51 10 chr6 3609389 3609487 -145907550 + MIRb SINE MIR 144 245 -23 1 612 254 269 127 56 chr6 3609610 3609736 -145907301 + MER5A1 DNA MER1_type 31 165 -1 1 612 255 354 54 34 chr6 3610018 3610167 -145906870 - LTR16B1 LTR ERVL -328 152 1 1 612 615 27 0 0 chr6 3610709 3610782 -145906255 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 612 457 252 101 29 chr6 3611360 3611499 -145905538 + B1F SINE Alu 1 149 0 1 612 234 0 0 0 chr6 3611909 3611935 -145905102 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 1 612 391 295 149 27 chr6 3612258 3612446 -145904591 - ID_B1 SINE B4 -12 212 2 1 612 180 125 0 0 chr6 3613336 3613368 -145903669 + (T)n Simple_repeat Simple_repeat 1 32 0 1 612 612 340 65 72 chr6 3613724 3614016 -145903021 - ORR1E LTR MaLR -69 290 1 1 612 201 39 0 0 chr6 3614320 3614346 -145902691 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 612 1662 239 30 28 chr6 3614388 3614818 -145902219 + RMER20A LTR ERVK 4 434 -82 1 612 384 88 0 0 chr6 3614863 3614920 -145902117 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 612 1325 303 59 34 chr6 3614927 3615539 -145901498 - Lx9 LINE L1 -207 7437 6811 1 612 350 317 92 14 chr6 3615590 3615731 -145901306 - Lx8 LINE L1 -973 6500 6349 1 612 275 280 40 10 chr6 3615794 3615895 -145901142 - RMER5 LTR ERV1 -232 302 199 1 612 373 333 34 8 chr6 3615885 3616003 -145901034 + B4 SINE B4 78 198 -94 1 612 704 244 0 7 chr6 3615898 3616034 -145901003 + B1_Mur1 SINE Alu 6 140 -9 1 612 342 0 0 0 chr6 3616034 3616072 -145900965 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 612 413 224 71 0 chr6 3616088 3616186 -145900851 - RMER5 LTR ERV1 -349 185 81 1 612 621 105 9 37 chr6 3616205 3616314 -145900723 - Lx4B LINE L1 -1263 5795 5690 1 612 335 200 26 13 chr6 3616329 3616405 -145900632 - RMER5 LTR ERV1 -457 77 1 1 612 280 236 205 18 chr6 3616648 3616760 -145900277 - RMER5 LTR ERV1 -23 511 379 1 612 575 247 38 91 chr6 3616768 3617107 -145899930 - L1_Rod LINE L1 -2816 3031 2711 1 612 679 307 17 0 chr6 3617669 3617845 -145899192 - B3 SINE B2 0 216 38 1 612 434 290 48 69 chr6 3618111 3618300 -145898737 + B3A SINE B2 14 198 0 1 612 606 135 0 0 chr6 3618313 3618417 -145898620 + (TA)n Simple_repeat Simple_repeat 1 104 0 1 612 263 333 21 32 chr6 3618435 3618528 -145898509 + RSINE1 SINE B4 48 139 -26 1 612 210 150 0 0 chr6 3618647 3618687 -145898350 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 612 436 367 59 47 chr6 3619151 3619471 -145897566 + MLT1A LTR MaLR 51 374 0 1 612 8612 3 0 0 chr6 3620163 3621227 -145895810 - L1Md_A LINE L1 0 6582 5519 1 612 3290 38 8 0 chr6 3621266 3621659 -145895378 - MTA_Mm LTR MaLR 0 396 1 1 612 27 29 0 0 chr6 3621908 3621942 -145895095 + AT_rich Low_complexity Low_complexity 1 34 0 1 612 2828 95 12 34 chr6 3621997 3622411 -145894626 + RLTR9E LTR ERVK 1 405 -4 1 612 15442 211 32 25 chr6 3622414 3628095 -145888942 + ETnERV2-int LTR ERVK 14 6225 -1181 1 612 456 109 11 45 chr6 3628230 3628322 -145888715 + ETnERV2-int LTR ERVK 7331 7406 0 1 612 3022 73 28 2 chr6 3628322 3628721 -145888316 + RLTR9E LTR ERVK 1 409 0 1 612 261 0 0 0 chr6 3628874 3628903 -145888134 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 612 180 97 0 0 chr6 3629396 3629427 -145887610 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 1 612 3018 113 11 19 chr6 3629442 3629911 -145887126 - Lx LINE L1 -4 6650 6186 1 612 1669 174 96 51 chr6 3630084 3630440 -145886597 + ORR1D1 LTR MaLR 1 372 -2 1 612 315 0 0 0 chr6 3630602 3630637 -145886400 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 612 595 376 35 32 chr6 3630654 3630937 -145886100 - B4A SINE B4 -8 284 1 1 612 5456 42 25 1 chr6 3631104 3631778 -145885259 - L1Md_F2 LINE L1 0 6582 5893 1 612 687 306 48 20 chr6 3631907 3632162 -145884875 + ORR1E LTR MaLR 4 291 -88 1 612 418 226 21 21 chr6 3632321 3632416 -145884621 + ORR1E LTR MaLR 281 375 -4 1 612 4121 194 67 15 chr6 3632722 3633539 -145883498 + RMER13A LTR ERVK 1 860 0 1 612 22 0 0 0 chr6 3634982 3635004 -145882033 + AT_rich Low_complexity Low_complexity 1 22 0 1 612 243 350 34 62 chr6 3638312 3638458 -145878579 - MIRb SINE MIR -4 264 123 1 612 29 0 0 0 chr6 3638873 3638902 -145878135 + AT_rich Low_complexity Low_complexity 1 29 0 1 612 197 331 78 62 chr6 3639859 3639988 -145877049 - L3 LINE CR1 -2359 2130 2000 1 612 1562 47 0 5 chr6 3640524 3640715 -145876322 + B2_Mm1a SINE B2 1 190 -3 1 612 24 0 0 0 chr6 3641597 3641621 -145875416 + AT_rich Low_complexity Low_complexity 1 24 0 1 612 504 48 0 0 chr6 3643016 3643079 -145873958 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 612 710 195 131 42 chr6 3643111 3643325 -145873712 + MTEb LTR MaLR 138 370 -9 1 612 363 154 0 0 chr6 3644811 3644876 -145872161 + GA-rich Low_complexity Low_complexity 1 65 0 1 612 3169 37 20 12 chr6 3645969 3646377 -145870660 + IAPLTR2a LTR ERVK 1 411 0 1 612 490 67 78 186 chr6 3646378 3646507 -145870530 + IAPEz-int LTR ERVK 9 123 -6358 1 612 256 222 0 0 chr6 3646507 3646552 -145870485 + RLTR27 LTR ERVK 231 275 -34 1 612 248 302 0 0 chr6 3646580 3646633 -145870404 + RLTR27 LTR ERVK 223 275 -34 1 612 10519 63 40 32 chr6 3646633 3648154 -145868883 + IAPEz-int LTR ERVK 168 1700 -4781 1 612 6061 67 11 6 chr6 3648147 3648972 -145868065 + IAPEz-int LTR ERVK 5651 6479 -2 1 612 3215 37 20 10 chr6 3648974 3649381 -145867656 + IAPLTR2a LTR ERVK 1 411 0 1 612 198 0 0 0 chr6 3649447 3649469 -145867568 + (T)n Simple_repeat Simple_repeat 1 22 0 1 612 202 128 0 25 chr6 3651987 3652027 -145865010 + A-rich Low_complexity Low_complexity 2 40 0 1 612 27 0 0 0 chr6 3652180 3652207 -145864830 + AT_rich Low_complexity Low_complexity 1 27 0 1 612 23 0 0 0 chr6 3652480 3652503 -145864534 + AT_rich Low_complexity Low_complexity 1 23 0 1 612 456 249 134 28 chr6 3653062 3653346 -145863691 - L1MEf LINE L1 -5186 1014 703 1 612 384 265 12 0 chr6 3653348 3653431 -145863606 - B1F SINE Alu -56 93 10 1 612 223 322 17 0 chr6 3653381 3653440 -145863597 - B4A SINE B4 -147 145 86 1 612 204 125 0 0 chr6 3653745 3653777 -145863260 + (TATATG)n Simple_repeat Simple_repeat 4 35 0 1 612 495 0 0 0 chr6 3655328 3655383 -145861654 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1 612 205 323 39 77 chr6 3656722 3656826 -145860211 + MIRb SINE MIR 99 198 -70 1 612 225 275 0 0 chr6 3657579 3657648 -145859389 - MADE2 DNA Mariner 0 80 12 1 612 231 333 36 0 chr6 3658016 3658100 -145858937 + Charlie17a DNA MER1_type 13 99 -120 1 612 1244 48 0 0 chr6 3660378 3660524 -145856513 - B1_Mus2 SINE Alu -1 146 1 1 612 592 309 100 19 chr6 3660707 3660968 -145856069 - B4A SINE B4 -10 282 1 1 612 227 31 31 0 chr6 3661591 3661623 -145855414 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 612 592 128 59 8 chr6 3661626 3661744 -145855293 - Lx2B LINE L1 -1 6999 6876 1 612 261 0 0 0 chr6 3664483 3664512 -145852525 + (T)n Simple_repeat Simple_repeat 1 29 0 1 612 237 132 0 0 chr6 3667335 3667373 -145849664 + (TTC)n Simple_repeat Simple_repeat 2 39 0 1 612 230 0 0 32 chr6 3669902 3669933 -145847104 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 1 613 213 39 0 0 chr6 3670971 3670997 -145846040 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 613 191 167 24 0 chr6 3671516 3671558 -145845479 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1 613 277 345 12 0 chr6 3672023 3672107 -145844930 - L2b LINE L2 -42 3333 3249 2 613 577 157 172 8 chr6 3675352 3675480 -145841557 - URR1B DNA MER1_type -76 149 1 2 613 1291 106 11 0 chr6 3677151 3677339 -145839698 + B2_Mm1t SINE B2 1 190 -3 2 613 502 238 175 0 chr6 3678173 3678299 -145838738 + RSINE1 SINE B4 1 148 -17 2 613 554 129 5 10 chr6 3678719 3678823 -145838214 + B1_Mus2 SINE Alu 1 102 -47 2 613 21 0 0 0 chr6 3679468 3679489 -145837548 + AT_rich Low_complexity Low_complexity 1 21 0 2 613 351 264 117 76 chr6 3679541 3679882 -145837155 + L1M4c LINE L1 799 1153 -5231 2 613 405 58 0 0 chr6 3682157 3682209 -145834828 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 613 429 244 136 64 chr6 3682300 3682550 -145834487 + Kanga1a DNA Tc2 449 716 -38 2 613 405 229 12 0 chr6 3682979 3683062 -145833975 - RSINE1 SINE B4 -79 86 3 2 613 250 339 58 0 chr6 3683752 3683814 -145833223 + ID_B1 SINE B4 97 224 0 2 613 271 152 68 0 chr6 3683814 3683873 -145833164 + B1F SINE Alu 87 149 0 2 613 3035 68 8 5 chr6 3684089 3684491 -145832546 + L1Md_F2 LINE L1 6177 6579 -3 2 613 424 316 33 71 chr6 3685124 3685308 -145831729 - B3A SINE B2 -20 178 2 2 613 296 300 60 52 chr6 3685334 3685450 -145831587 - B4A SINE B4 0 292 176 2 613 21 0 0 0 chr6 3685788 3685809 -145831228 + AT_rich Low_complexity Low_complexity 1 21 0 2 613 25 0 0 0 chr6 3685862 3685887 -145831150 + AT_rich Low_complexity Low_complexity 1 25 0 2 613 300 305 68 39 chr6 3688215 3688351 -145828686 + MER5A DNA MER1_type 3 137 -29 2 613 288 0 0 0 chr6 3690892 3690924 -145826113 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 613 1050 67 0 0 chr6 3691748 3691883 -145825154 + B1_Mm SINE Alu 1 135 -12 2 613 809 284 66 12 chr6 3693924 3694166 -145822871 - B4A SINE B4 -37 255 1 2 613 1164 75 0 0 chr6 3694175 3694322 -145822715 - B1_Mus1 SINE Alu 0 148 2 2 613 387 0 0 0 chr6 3695122 3695165 -145821872 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 613 264 30 0 0 chr6 3695166 3695199 -145821838 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 613 234 0 0 0 chr6 3696139 3696165 -145820872 + (T)n Simple_repeat Simple_repeat 1 26 0 2 613 24 32 0 0 chr6 3696325 3696356 -145820681 + AT_rich Low_complexity Low_complexity 1 31 0 2 613 211 195 24 0 chr6 3696933 3696974 -145820063 + GA-rich Low_complexity Low_complexity 3 44 0 2 613 446 83 14 0 chr6 3696981 3697053 -145819984 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 2 613 252 0 0 0 chr6 3697168 3697196 -145819841 + (T)n Simple_repeat Simple_repeat 1 28 0 2 613 234 170 0 41 chr6 3697779 3697828 -145819209 - MER96B DNA hAT -156 261 215 2 613 302 325 35 9 chr6 3697960 3698075 -145818962 - MIR SINE MIR -132 130 13 2 613 258 266 60 26 chr6 3700135 3700251 -145816786 - RLTR15 LTR ERVK -75 284 165 2 613 375 23 0 0 chr6 3700432 3700476 -145816561 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 613 294 364 37 16 chr6 3700938 3701125 -145815912 - Charlie18a DNA MER1_type -111 231 41 2 613 209 355 33 22 chr6 3701495 3701587 -145815450 + MIRb SINE MIR 115 207 -61 2 613 240 233 52 112 chr6 3701843 3701959 -145815078 - LTR90A LTR LTR -49 927 819 2 613 270 315 34 20 chr6 3702996 3703142 -145813895 + MIR SINE MIR 111 258 -4 2 613 915 189 52 28 chr6 3704067 3704279 -145812758 + Charlie26a DNA MER1_type 88 304 -21 2 613 22 0 0 0 chr6 3704848 3704870 -145812167 + AT_rich Low_complexity Low_complexity 1 22 0 2 613 357 318 0 15 chr6 3705653 3705784 -145811253 - MER2 DNA MER2_type -70 275 147 2 613 750 218 45 32 chr6 3705781 3705985 -145811052 - B3A SINE B2 0 216 4 2 613 543 66 0 0 chr6 3706828 3706904 -145810133 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 613 414 0 0 0 chr6 3707532 3707578 -145809459 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 613 198 0 0 0 chr6 3708414 3708436 -145808601 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 613 194 0 39 0 chr6 3708711 3708737 -145808300 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 613 214 374 28 0 chr6 3709124 3709231 -145807806 - MIRb SINE MIR -146 122 13 2 613 261 376 81 6 chr6 3709302 3709476 -145807561 + MIRc SINE MIR 31 217 -51 2 613 278 287 46 163 chr6 3709964 3710160 -145806877 - MER5B DNA MER1_type 0 178 6 2 613 28 0 0 0 chr6 3710431 3710459 -145806578 + AT_rich Low_complexity Low_complexity 1 28 0 2 613 3297 92 6 4 chr6 3711347 3711814 -145805223 + L1_Mus4 LINE L1 6166 6633 -3 2 613 461 290 96 5 chr6 3716795 3716982 -145800055 - B4A SINE B4 -83 209 6 2 613 231 36 0 0 chr6 3717439 3717467 -145799570 + (T)n Simple_repeat Simple_repeat 1 28 0 2 613 212 77 26 0 chr6 3717529 3717568 -145799469 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 613 21 36 0 0 chr6 3717828 3717856 -145799181 + AT_rich Low_complexity Low_complexity 1 28 0 2 613 362 21 0 21 chr6 3718832 3718880 -145798157 + (GAAAA)n Simple_repeat Simple_repeat 4 50 0 2 613 200 35 35 0 chr6 3719045 3719074 -145797963 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2 613 249 298 21 0 chr6 3719672 3719766 -145797271 - MER5A1 DNA MER1_type -3 163 68 2 613 324 0 0 0 chr6 3719825 3719861 -145797176 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 613 635 332 33 21 chr6 3719864 3720104 -145796933 - B4A SINE B4 -20 272 30 2 613 208 355 63 16 chr6 3721505 3721631 -145795406 - MIRb SINE MIR 0 268 137 2 613 246 254 17 0 chr6 3721858 3721917 -145795120 + MIR SINE MIR 87 146 -116 2 613 21 0 0 0 chr6 3723820 3723841 -145793196 + AT_rich Low_complexity Low_complexity 1 21 0 2 613 751 251 43 19 chr6 3724003 3724214 -145792823 + B3 SINE B2 1 216 0 2 613 556 318 106 0 chr6 3724473 3724662 -145792375 + MER58A DNA MER1_type 1 209 -15 2 613 326 280 72 56 chr6 3725016 3725141 -145791896 + B4 SINE B4 64 190 -102 2 613 824 241 139 36 chr6 3725318 3725705 -145791332 + Lx8 LINE L1 7047 7473 0 2 613 27 0 0 0 chr6 3726406 3726433 -145790604 + AT_rich Low_complexity Low_complexity 1 27 0 2 613 202 77 50 25 chr6 3727147 3727187 -145789850 + GA-rich Low_complexity Low_complexity 5 45 0 2 613 619 267 96 67 chr6 3727379 3727588 -145789449 - B3A SINE B2 0 216 2 2 613 305 308 21 70 chr6 3729284 3729427 -145787610 + MIRb SINE MIR 91 226 -42 2 613 281 68 25 75 chr6 3730072 3730152 -145786885 + (TCTCTG)n Simple_repeat Simple_repeat 2 77 0 2 613 213 121 0 0 chr6 3730153 3730186 -145786851 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 613 393 161 0 0 chr6 3730540 3730627 -145786410 + GA-rich Low_complexity Low_complexity 2 88 0 2 613 338 281 23 23 chr6 3730784 3730915 -145786122 + MTEb LTR MaLR 238 368 -11 2 613 186 209 0 0 chr6 3731332 3731375 -145785662 + CT-rich Low_complexity Low_complexity 3 45 0 2 613 612 268 43 38 chr6 3731610 3731796 -145785241 - B3A SINE B2 -10 188 2 2 613 813 236 25 25 chr6 3731992 3732188 -145784849 - Lx6 LINE L1 -60 7400 7205 2 613 234 128 0 0 chr6 3732231 3732270 -145784767 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 613 222 128 0 0 chr6 3732937 3732976 -145784061 + (A)n Simple_repeat Simple_repeat 1 39 0 2 613 25 0 0 0 chr6 3733223 3733248 -145783789 + AT_rich Low_complexity Low_complexity 1 25 0 2 613 438 118 32 0 chr6 3733330 3733423 -145783614 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 613 24 67 0 0 chr6 3734062 3734107 -145782930 + AT_rich Low_complexity Low_complexity 1 45 0 2 613 23 0 0 0 chr6 3734793 3734816 -145782221 + AT_rich Low_complexity Low_complexity 1 23 0 2 613 377 252 37 18 chr6 3735558 3735667 -145781370 - PB1D10 SINE Alu -6 111 1 2 613 183 42 0 0 chr6 3736138 3736162 -145780875 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 613 186 43 0 0 chr6 3736168 3736191 -145780846 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 613 5927 75 16 8 chr6 3736507 3737353 -145779684 - L1Md_F2 LINE L1 0 6582 5730 2 613 2476 92 49 44 chr6 3737353 3737762 -145779275 + IAPLTR2a LTR ERVK 1 411 0 2 613 1237 76 10 75 chr6 3737763 3737963 -145779074 + IAPEz-int LTR ERVK 9 195 -6286 2 613 52909 20 6 14 chr6 3737963 3744380 -145772657 + IAPEz-int LTR ERVK 116 6481 0 2 613 2504 85 51 47 chr6 3744380 3744789 -145772248 + IAPLTR2a LTR ERVK 1 411 0 2 613 617 113 10 0 chr6 3744789 3744886 -145772151 - L1_Mus4 LINE L1 -901 5735 5638 2 613 234 0 0 0 chr6 3745395 3745421 -145771616 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 613 1139 29 0 0 chr6 3745447 3745586 -145771451 - B1_Mus2 SINE Alu 0 147 9 2 613 557 208 77 77 chr6 3745452 3745608 -145771429 - B4 SINE B4 -71 221 66 2 613 325 346 50 22 chr6 3745595 3745734 -145771303 + MLT1F1 LTR MaLR 88 230 -339 2 613 285 366 63 0 chr6 3745800 3745942 -145771095 + MLT1F1 LTR MaLR 384 534 -35 2 613 210 182 0 22 chr6 3746282 3746327 -145770710 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2 613 542 334 67 7 chr6 3746422 3746720 -145770317 + Lx7 LINE L1 6961 7276 -420 2 613 22 35 0 0 chr6 3748411 3748440 -145768597 + AT_rich Low_complexity Low_complexity 1 29 0 2 613 332 295 36 88 chr6 3748578 3748771 -145768266 + ORR1E LTR MaLR 3 185 -174 2 613 21 36 0 0 chr6 3749066 3749094 -145767943 + AT_rich Low_complexity Low_complexity 1 28 0 2 613 501 17 0 0 chr6 3749159 3749217 -145767820 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 613 350 227 0 0 chr6 3749267 3749342 -145767695 - Lx7 LINE L1 -410 7286 7212 2 613 402 307 0 50 chr6 3750183 3750303 -145766734 + PB1D10 SINE Alu 1 114 -3 3 613 1231 68 0 0 chr6 3751306 3751467 -145765570 - L1_Mus1 LINE L1 -1 6566 6406 3 613 392 274 68 0 chr6 3751492 3751609 -145765428 + RMER10A LTR ERVL 272 396 -46 3 613 957 101 0 0 chr6 3751609 3751748 -145765289 + (GAAAA)n Simple_repeat Simple_repeat 2 140 0 3 613 549 80 0 0 chr6 3752252 3752327 -145764710 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 3 613 293 318 0 0 chr6 3752330 3752416 -145764621 + (CCCA)n Simple_repeat Simple_repeat 3 88 0 3 613 608 59 0 12 chr6 3752416 3752502 -145764535 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 3 613 293 318 0 0 chr6 3752502 3752525 -145764512 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 3 613 302 200 53 53 chr6 3752525 3752620 -145764417 - L1MC2 LINE L1 -308 6036 5942 3 613 553 312 127 56 chr6 3752960 3753479 -145763558 - L1M5 LINE L1 -1731 4415 3860 3 613 629 86 0 11 chr6 3753535 3753629 -145763408 + (TC)n Simple_repeat Simple_repeat 1 93 0 3 613 328 289 0 0 chr6 3753778 3753868 -145763169 - Lx7 LINE L1 -481 7215 7126 3 613 914 313 123 11 chr6 3754037 3754476 -145762561 - MLT1E2 LTR MaLR 0 627 140 3 613 293 273 81 9 chr6 3754624 3754735 -145762302 - MLT1E2-int LTR MaLR -3 1486 1368 3 613 637 307 50 6 chr6 3755045 3755225 -145761812 - ID_B1 SINE B4 -29 195 8 3 613 288 271 77 60 chr6 3755226 3755563 -145761474 - L1M5 LINE L1 -2977 3169 2826 3 613 2420 114 27 3 chr6 3756279 3756647 -145760390 + Lx3_Mus LINE L1 6617 6993 -16 3 613 897 59 25 0 chr6 3757515 3757634 -145759403 + RLTR13B1 LTR ERVK 1 122 -771 3 613 3874 126 30 8 chr6 3757634 3758267 -145758770 + ETnERV3-int LTR ERVK 5134 5780 -28 3 613 7338 50 9 0 chr6 3758281 3759166 -145757871 + RLTR13B1 LTR ERVK 1 893 0 3 613 23 33 0 0 chr6 3759225 3759255 -145757782 + AT_rich Low_complexity Low_complexity 1 30 0 3 613 1333 136 52 0 chr6 3759260 3759473 -145757564 + Lx3B LINE L1 6747 6970 -3 3 613 180 0 0 0 chr6 3759480 3759500 -145757537 + (CTA)n Simple_repeat Simple_repeat 1 20 0 3 613 608 138 8 0 chr6 3760790 3760920 -145756117 + (GA)n Simple_repeat Simple_repeat 1 131 0 3 613 1035 57 0 7 chr6 3761140 3761282 -145755755 - L1_Mus2 LINE L1 0 6566 6426 3 613 216 0 0 0 chr6 3761299 3761323 -145755714 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 613 1098 96 0 0 chr6 3761331 3761477 -145755560 - B1_Mus1 SINE Alu -2 146 1 3 613 234 0 0 0 chr6 3762991 3763017 -145754020 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3 613 273 221 76 42 chr6 3763349 3763467 -145753570 + Lx9 LINE L1 7516 7637 -7 3 613 28 0 0 0 chr6 3763550 3763578 -145753459 + AT_rich Low_complexity Low_complexity 1 28 0 3 613 534 70 0 0 chr6 3763877 3763948 -145753089 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 3 613 1115 101 0 0 chr6 3763964 3764112 -145752925 - B1_Mus1 SINE Alu 0 148 1 3 613 32 43 0 0 chr6 3764276 3764322 -145752715 + AT_rich Low_complexity Low_complexity 1 46 0 3 613 590 234 87 43 chr6 3764331 3764492 -145752545 + B4A SINE B4 124 291 -1 3 613 36284 31 0 0 chr6 3764750 3770898 -145746139 - L1Md_T LINE L1 0 6585 339 3 613 6964 86 6 1 chr6 3770906 3772014 -145745023 - L1_Mus1 LINE L1 0 6567 5454 3 613 6815 112 16 2 chr6 3772012 3773679 -145743358 - L1Md_F LINE L1 -3608 2275 584 3 613 26 30 0 0 chr6 3773691 3773724 -145743313 + AT_rich Low_complexity Low_complexity 1 33 0 3 613 446 120 13 0 chr6 3774562 3774637 -145742400 + (TCCCC)n Simple_repeat Simple_repeat 1 76 0 3 613 612 156 0 0 chr6 3774630 3774739 -145742298 + CT-rich Low_complexity Low_complexity 2 110 0 3 613 326 42 0 20 chr6 3775679 3775728 -145741309 + (TTTTG)n Simple_repeat Simple_repeat 1 48 0 3 613 1062 83 0 0 chr6 3775728 3775861 -145741176 - B1_Mm SINE Alu -13 134 2 3 613 1330 144 42 5 chr6 3775937 3776154 -145740883 + URR1A DNA MER1_type 2 226 0 3 613 229 339 28 12 chr6 3776171 3776276 -145740761 + MIRm SINE MIR 34 146 -130 3 613 510 288 50 25 chr6 3776493 3776653 -145740384 + B3A SINE B2 1 164 -34 3 613 612 27 0 0 chr6 3776657 3776731 -145740306 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 613 540 30 0 0 chr6 3777883 3777949 -145739088 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 613 673 256 110 0 chr6 3778643 3778834 -145738203 + B3 SINE B2 5 216 0 3 613 29 0 0 0 chr6 3778927 3778956 -145738081 + AT_rich Low_complexity Low_complexity 1 29 0 3 613 208 0 62 0 chr6 3779817 3779849 -145737188 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 613 21 0 0 0 chr6 3780328 3780349 -145736688 + AT_rich Low_complexity Low_complexity 1 21 0 3 613 31187 106 4 6 chr6 3780995 3786492 -145730545 + L1_Mus1 LINE L1 1092 6567 0 3 613 25 31 0 0 chr6 3786492 3786524 -145730513 + AT_rich Low_complexity Low_complexity 1 32 0 3 613 260 272 29 19 chr6 3786584 3786689 -145730348 - L1MEf LINE L1 -4853 1347 1242 3 613 21 0 0 0 chr6 3787313 3787334 -145729703 + AT_rich Low_complexity Low_complexity 1 21 0 3 613 2528 263 65 60 chr6 3787342 3787485 -145729552 - Lx7 LINE L1 0 7696 7549 3 613 198 0 0 0 chr6 3787485 3787507 -145729530 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 3 613 2528 263 65 60 chr6 3787507 3787617 -145729420 - Lx7 LINE L1 -148 7548 7423 3 613 648 0 0 0 chr6 3787617 3787689 -145729348 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 613 2528 263 65 60 chr6 3787689 3788233 -145728804 - Lx7 LINE L1 -274 7422 6909 3 613 507 17 0 0 chr6 3788233 3788293 -145728744 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 613 2528 264 131 77 chr6 3788293 3788465 -145728572 - Lx7 LINE L1 -788 6908 6688 3 613 235 255 21 0 chr6 3788465 3788512 -145728525 - RMER13B LTR ERVK -216 692 645 3 613 2528 264 131 77 chr6 3788512 3788767 -145728270 - Lx7 LINE L1 -788 6687 6357 3 613 2400 176 55 40 chr6 3788762 3789311 -145727726 - L1_Mur3 LINE L1 -322 5558 5002 3 613 606 203 82 175 chr6 3789312 3789391 -145727646 + ORR1C2 LTR MaLR 1 79 -305 3 613 2180 69 24 0 chr6 3789391 3789682 -145727355 + L1_Mus3 LINE L1 6341 6638 0 3 613 606 203 82 175 chr6 3789682 3789722 -145727315 + ORR1C2 LTR MaLR 80 106 -278 3 613 1568 84 0 5 chr6 3789722 3789936 -145727101 + L1_Mus2 LINE L1 6353 6565 -1 3 613 606 203 82 175 chr6 3789936 3790032 -145727005 + ORR1C2 LTR MaLR 107 180 -204 3 613 564 15 0 0 chr6 3790032 3790097 -145726940 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 613 606 203 82 175 chr6 3790097 3790136 -145726901 + ORR1C2 LTR MaLR 181 232 -152 3 613 1710 155 53 20 chr6 3790160 3790502 -145726535 - L1_Mur3 LINE L1 -1171 4709 4357 3 613 195 167 0 0 chr6 3790589 3790631 -145726406 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 613 292 276 181 0 chr6 3790989 3791094 -145725943 - L2a LINE L2 -4 3422 3299 3 613 456 331 19 7 chr6 3791195 3791379 -145725658 - MLT1C LTR MaLR 0 467 193 3 613 254 264 129 48 chr6 3791417 3791564 -145725473 + RSINE1 SINE B4 2 160 -5 3 613 217 229 0 0 chr6 3791605 3791640 -145725397 + B4A SINE B4 89 123 -169 3 613 368 318 39 8 chr6 3791610 3791740 -145725297 + B1_Mur1 SINE Alu 9 142 -7 3 613 212 196 22 0 chr6 3791766 3791812 -145725225 + A-rich Low_complexity Low_complexity 4 50 0 3 613 284 321 88 68 chr6 3791818 3791965 -145725072 - MLT1C LTR MaLR -220 154 5 3 613 502 305 182 28 chr6 3793700 3793716 -145723321 + MTC LTR MaLR 4 21 -386 3 613 180 0 0 0 chr6 3793716 3793736 -145723301 + (TTG)n Simple_repeat Simple_repeat 1 20 0 3 613 617 257 136 12 chr6 3793736 3794069 -145722968 + MTC LTR MaLR 22 407 -14 3 613 711 279 82 8 chr6 3794525 3794781 -145722256 + B4A SINE B4 1 275 -17 3 613 291 28 0 0 chr6 3796034 3796070 -145720967 + (T)n Simple_repeat Simple_repeat 1 36 0 3 613 365 287 69 13 chr6 3797277 3797436 -145719601 - MIR SINE MIR 0 262 95 3 613 212 345 17 0 chr6 3797509 3797567 -145719470 - ID4_ SINE ID -14 69 11 3 613 596 281 62 0 chr6 3798131 3798355 -145718682 - L1M2 LINE L1 -600 5691 5454 3 613 246 271 116 12 chr6 3798926 3799012 -145718025 - L1MC LINE L1 -795 5538 5444 3 613 390 309 101 8 chr6 3799091 3799339 -145717698 - L1MC LINE L1 -3098 3048 2778 3 613 374 231 220 9 chr6 3799619 3799728 -145717309 + Lx8 LINE L1 7105 7236 -237 3 613 774 268 255 24 chr6 3800605 3800987 -145716050 - Lx9 LINE L1 -15 7629 7147 3 76 1069 173 119 0 chr6 3800987 3801189 -145715848 - URR1A DNA MER1_type 0 226 1 3 614 774 268 255 24 chr6 3801189 3801222 -145715815 - Lx9 LINE L1 -498 7146 7118 3 614 24 0 0 0 chr6 3801222 3801246 -145715791 + AT_rich Low_complexity Low_complexity 1 24 0 3 614 22 56 0 0 chr6 3801294 3801330 -145715707 + AT_rich Low_complexity Low_complexity 1 36 0 3 614 225 0 0 0 chr6 3801399 3801424 -145715613 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 3 614 1125 88 0 0 chr6 3801438 3801585 -145715452 - B1_Mm SINE Alu 0 147 1 3 614 225 83 0 0 chr6 3801844 3801880 -145715157 + (T)n Simple_repeat Simple_repeat 1 36 0 3 614 478 351 44 50 chr6 3802182 3802336 -145714701 - Lx8 LINE L1 -64 7409 7256 3 614 2192 180 2 22 chr6 3802336 3802751 -145714286 + MTB_Mm LTR MaLR 1 407 0 3 614 478 351 44 50 chr6 3802751 3802917 -145714120 - Lx8 LINE L1 -218 7255 7091 3 614 716 207 148 67 chr6 3802918 3803302 -145713735 + RMER6C LTR ERVK 5 455 -235 3 614 278 186 39 19 chr6 3803302 3803406 -145713631 + (CAGTG)n Simple_repeat Simple_repeat 2 107 0 3 614 239 166 44 19 chr6 3803422 3803582 -145713455 + (CAGTG)n Simple_repeat Simple_repeat 2 165 0 3 614 217 154 50 25 chr6 3803642 3803802 -145713235 + (CAGTG)n Simple_repeat Simple_repeat 2 165 0 3 614 211 145 56 28 chr6 3803819 3803890 -145713147 + (CAGTG)n Simple_repeat Simple_repeat 2 74 0 3 614 363 186 50 25 chr6 3803906 3804066 -145712971 + (CAGTG)n Simple_repeat Simple_repeat 2 165 0 3 614 413 173 50 25 chr6 3804082 3804242 -145712795 + (CAGTG)n Simple_repeat Simple_repeat 2 165 0 3 614 405 191 44 19 chr6 3804302 3804511 -145712526 + (CAGTG)n Simple_repeat Simple_repeat 1 214 0 3 614 404 173 50 25 chr6 3804522 3804682 -145712355 + (CAGTG)n Simple_repeat Simple_repeat 2 165 0 3 614 1604 148 41 58 chr6 3804699 3805064 -145711973 + RMER6C LTR ERVK 332 690 0 3 614 903 243 57 17 chr6 3805220 3805450 -145711587 - Lx5 LINE L1 -1 7049 6811 3 614 562 322 64 58 chr6 3805536 3805862 -145711175 + Charlie1a DNA MER1_type 270 597 -858 3 614 469 312 43 25 chr6 3805862 3806023 -145711014 - MER63B DNA AcHobo 0 436 273 3 614 546 280 100 37 chr6 3806224 3806465 -145710572 + Charlie1a DNA MER1_type 837 1092 -363 3 614 360 0 0 0 chr6 3807815 3807855 -145709182 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 614 405 0 0 0 chr6 3807855 3807899 -145709138 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 614 302 284 10 102 chr6 3807907 3808005 -145709032 - ID_B1 SINE B4 -54 170 82 3 614 475 285 50 67 chr6 3809012 3809373 -145707664 - L1ME1 LINE L1 -27 6152 5798 3 614 248 299 89 19 chr6 3809907 3810064 -145706973 - L1MEf LINE L1 -753 5393 5226 3 614 249 276 0 0 chr6 3810077 3810135 -145706902 + Lx8 LINE L1 6614 6671 -802 3 614 416 77 15 0 chr6 3810249 3810314 -145706723 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 614 351 258 23 30 chr6 3810466 3810598 -145706439 - L1MEf LINE L1 -4593 1649 1519 3 614 34 24 0 0 chr6 3812184 3812225 -145704812 + AT_rich Low_complexity Low_complexity 1 41 0 3 614 330 340 6 39 chr6 3812283 3812439 -145704598 - RSINE1 SINE B4 -12 153 3 4 614 246 329 0 27 chr6 3813768 3813843 -145703194 + ID4_ SINE ID 7 79 -4 4 614 22 0 0 0 chr6 3814126 3814148 -145702889 + AT_rich Low_complexity Low_complexity 1 22 0 4 614 552 258 218 18 chr6 3814677 3814902 -145702135 + MT2A LTR ERVL 5 274 -259 4 614 220 156 44 0 chr6 3815044 3815089 -145701948 + GA-rich Low_complexity Low_complexity 3 49 0 4 614 233 301 0 27 chr6 3815093 3815168 -145701869 + CT-rich Low_complexity Low_complexity 5 77 0 4 614 685 164 0 7 chr6 3815222 3815357 -145701680 + Lx2 LINE L1 6863 6996 -1 4 614 600 111 0 0 chr6 3815357 3815447 -145701590 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 4 614 263 302 201 11 chr6 3815535 3815709 -145701328 + L1MEc LINE L1 577 783 -5617 4 614 341 264 93 19 chr6 3816112 3816274 -145700763 + L1MEc LINE L1 816 989 -5411 4 614 275 306 57 0 chr6 3816661 3816785 -145700252 + L1MEc LINE L1 1639 1769 -4570 4 614 21 0 0 0 chr6 3817677 3817698 -145699339 + AT_rich Low_complexity Low_complexity 1 21 0 4 614 290 364 33 7 chr6 3818929 3819081 -145697956 + L2a LINE L2 3267 3422 -4 4 614 817 120 7 7 chr6 3820723 3820866 -145696171 + (TTC)n Simple_repeat Simple_repeat 2 144 0 4 614 247 79 0 0 chr6 3820866 3820904 -145696133 - B1_Mm SINE Alu 0 147 110 4 614 5787 82 5 41 chr6 3821750 3822588 -145694449 - L1Md_A LINE L1 -380 5503 4696 4 614 10359 94 2 14 chr6 3822588 3824638 -145692399 - L1Md_A LINE L1 -3234 2649 284 4 614 1087 208 49 59 chr6 3824640 3825173 -145691864 + MMETn-int LTR ERVK 2925 3749 -1095 4 614 398 164 14 0 chr6 3825384 3825457 -145691580 + MMETn-int LTR ERVK 7331 7404 -2 4 614 2696 62 110 11 chr6 3825458 3825832 -145691205 + RLTR9F LTR ERVK 1 411 -4 4 614 3673 134 49 3 chr6 3825832 3826439 -145690598 - RLTR13D6 LTR ERVK -267 635 1 4 614 819 240 19 29 chr6 3826624 3826830 -145690207 + B3 SINE B2 4 207 -9 4 614 23 0 0 0 chr6 3826832 3826855 -145690182 + AT_rich Low_complexity Low_complexity 1 23 0 4 614 753 327 32 97 chr6 3826855 3827197 -145689840 - MTEa LTR MaLR -48 331 12 4 614 471 318 93 37 chr6 3827254 3827354 -145689683 - L1_Mur3 LINE L1 -593 5707 5597 4 614 212 0 36 0 chr6 3827354 3827382 -145689655 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 4 614 472 310 99 19 chr6 3827382 3827977 -145689060 - L1_Mur3 LINE L1 -704 5596 4948 4 614 32679 87 9 19 chr6 3828297 3833303 -145683734 + L1Md_F2 LINE L1 555 5516 -367 4 614 3261 73 77 0 chr6 3833303 3833744 -145683293 - MT2C_Mm LTR ERVL 0 475 1 4 614 10360 71 9 5 chr6 3833744 3833819 -145683218 + L1Md_F2 LINE L1 5517 5586 -297 4 614 7365 72 19 2 chr6 3833819 3834789 -145682248 + L1Md_F2 LINE L1 5587 6572 -10 4 614 1501 95 0 9 chr6 3835048 3835272 -145681765 - L1Md_F2 LINE L1 -1 6581 6360 4 614 2916 132 8 29 chr6 3835806 3836298 -145680739 + Lx2B LINE L1 6508 6989 -11 4 614 315 219 4 74 chr6 3836723 3836752 -145680285 - Lx4B LINE L1 -1805 5668 5643 4 614 6301 79 20 0 chr6 3836752 3837612 -145679425 - Lx3_Mus LINE L1 -8 7001 6125 4 614 3318 99 4 31 chr6 3837612 3838127 -145678910 - Lx4B LINE L1 -240 5646 5147 4 614 180 0 0 0 chr6 3839705 3839725 -145677312 + (T)n Simple_repeat Simple_repeat 1 20 0 4 614 182 219 49 0 chr6 3839725 3839766 -145677271 - MIRc SINE MIR -162 106 64 4 614 21 57 0 0 chr6 3841149 3841184 -145675853 + AT_rich Low_complexity Low_complexity 1 35 0 4 614 186 133 0 0 chr6 3841701 3841731 -145675306 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 614 34 24 0 0 chr6 3843414 3843455 -145673582 + AT_rich Low_complexity Low_complexity 1 41 0 4 614 1599 338 63 10 chr6 3843583 3844298 -145672739 - Lx8 LINE L1 -232 7241 6489 4 614 226 228 165 73 chr6 3845799 3845908 -145671129 + ID_B1 SINE B4 79 197 -27 4 614 401 120 120 0 chr6 3846015 3846090 -145670947 - URR1B DNA MER1_type -86 139 56 4 614 360 0 0 0 chr6 3846090 3846130 -145670907 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 4 614 2275 154 5 17 chr6 3846222 3846631 -145670406 + Lx LINE L1 6249 6652 -2 4 614 347 167 83 0 chr6 3846670 3846742 -145670295 - L1MB1 LINE L1 -282 5907 5830 4 614 248 346 39 0 chr6 3847043 3847121 -145669916 - MIR SINE MIR -161 101 21 4 614 1011 202 73 5 chr6 3847318 3847522 -145669515 - URR1B DNA MER1_type 0 225 8 4 614 547 350 24 79 chr6 3847915 3848334 -145668703 + L1M4 LINE L1 11 406 -6136 4 614 261 0 0 0 chr6 3848415 3848444 -145668593 + (T)n Simple_repeat Simple_repeat 1 29 0 4 614 1197 61 0 0 chr6 3848448 3848595 -145668442 - B1_Mm SINE Alu 0 147 1 4 614 351 312 120 31 chr6 3848621 3848846 -145668191 + L1M4 LINE L1 532 776 -5766 4 614 244 88 0 0 chr6 3848889 3848923 -145668114 + RLTRETN_Mm LTR ERVK 289 322 0 4 614 342 122 43 22 chr6 3848944 3849036 -145668001 + (CAGAGA)n Simple_repeat Simple_repeat 3 96 0 4 614 333 0 0 0 chr6 3849134 3849171 -145667866 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 614 210 136 0 0 chr6 3849181 3849225 -145667812 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 614 400 266 83 0 chr6 3849318 3849427 -145667610 + L1M4 LINE L1 824 941 -5601 4 614 1654 245 17 96 chr6 3849797 3850257 -145666780 + Lx6 LINE L1 7035 7458 -2 4 614 602 26 13 0 chr6 3851582 3851658 -145665379 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 614 22 56 0 0 chr6 3852604 3852640 -145664397 + AT_rich Low_complexity Low_complexity 1 36 0 4 614 1427 258 21 3 chr6 3853341 3853729 -145663308 + L1_Mur3 LINE L1 3705 4099 -1781 4 614 421 209 34 19 chr6 3853755 3853876 -145663161 - Lx3C LINE L1 0 6997 6867 4 614 281 200 11 45 chr6 3853884 3853973 -145663064 + L1_Mur3 LINE L1 4113 4198 -1682 4 614 755 315 64 39 chr6 3853996 3854590 -145662447 - L1MC LINE L1 -2002 4144 3536 4 614 2291 109 89 12 chr6 3854597 3855014 -145662023 - RLTR44E LTR ERVK 0 452 4 4 614 1027 259 52 13 chr6 3855018 3855406 -145661631 - L1MC LINE L1 -2611 3535 3133 4 614 1343 220 141 37 chr6 3855607 3856069 -145660968 - Lx9 LINE L1 -1 7643 7134 4 614 212 212 29 29 chr6 3856126 3856194 -145660843 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 614 1095 295 82 32 chr6 3856197 3856904 -145660133 - L1MC LINE L1 -3038 3108 2367 4 614 505 209 14 14 chr6 3856958 3857099 -145659938 - Lx5 LINE L1 -3 7047 6907 4 614 230 233 116 0 chr6 3857130 3857216 -145659821 - L1MC LINE L1 -3769 2377 2282 4 614 1030 68 14 0 chr6 3858120 3858268 -145658769 + (TCTCCC)n Simple_repeat Simple_repeat 1 150 0 4 614 23 68 0 0 chr6 3860684 3860728 -145656309 + AT_rich Low_complexity Low_complexity 1 44 0 4 614 24 32 0 0 chr6 3862190 3862221 -145654816 + AT_rich Low_complexity Low_complexity 1 31 0 4 614 401 287 92 21 chr6 3862336 3862753 -145654284 + L1MEf LINE L1 1164 1642 -4600 4 614 237 286 101 21 chr6 3862872 3863061 -145653976 + L1MEf LINE L1 2784 2987 -3159 4 614 189 0 0 0 chr6 3863505 3863526 -145653511 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4 614 433 16 49 0 chr6 3863661 3863722 -145653315 + (TAAA)n Simple_repeat Simple_repeat 3 66 0 4 614 1015 274 57 0 chr6 3863825 3864124 -145652913 + Lx8 LINE L1 5532 5847 0 4 614 413 19 19 0 chr6 3864132 3864186 -145652851 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 614 257 212 74 12 chr6 3864239 3864320 -145652717 + Lx9 LINE L1 7559 7644 0 4 614 655 270 19 19 chr6 3864362 3864524 -145652513 + Lx8 LINE L1 7171 7332 -141 4 614 242 77 0 0 chr6 3864608 3864647 -145652390 + L1_Mus2 LINE L1 6528 6566 0 4 614 307 325 80 74 chr6 3864755 3864918 -145652119 - MER58A DNA MER1_type -16 208 45 4 614 2194 175 37 110 chr6 3865141 3865712 -145651325 - RLTR24 LTR ERV1 0 529 1 4 614 464 200 0 10 chr6 3866899 3866995 -145650042 + Lx8 LINE L1 5833 5927 -1546 4 614 1014 92 0 0 chr6 3867190 3867321 -145649716 - B1_Mus1 SINE Alu -9 139 9 4 614 1067 247 121 56 chr6 3867321 3867750 -145649287 - L1_Mur3 LINE L1 -92 5788 5332 4 614 1973 68 0 0 chr6 3867765 3868016 -145649021 - L1_Mus1 LINE L1 0 6567 6317 4 614 1263 51 0 0 chr6 3868016 3868172 -145648865 + L1Md_F2 LINE L1 6182 6337 -245 4 614 2172 260 93 78 chr6 3868203 3868261 -145648776 - L1_Mur3 LINE L1 -570 5310 5240 4 614 835 103 0 22 chr6 3868261 3868400 -145648637 + (TTTC)n Simple_repeat Simple_repeat 2 137 0 4 614 2172 260 93 78 chr6 3868400 3869512 -145647525 - L1_Mur3 LINE L1 -641 5239 4123 4 614 586 284 64 30 chr6 3869518 3869721 -145647316 + MLT2B3 LTR ERVL 1 210 -344 4 614 4510 88 5 0 chr6 3869755 3870422 -145646615 - L1_Mus3 LINE L1 0 6638 6020 4 614 213 263 19 39 chr6 3870422 3870470 -145646567 + T-rich Low_complexity Low_complexity 4 50 0 4 614 405 0 0 0 chr6 3871199 3871244 -145645793 + (TTA)n Simple_repeat Simple_repeat 1 45 0 4 614 316 250 13 40 chr6 3872153 3872228 -145644809 - ID4_ SINE ID -8 75 3 4 614 22 0 0 0 chr6 3872618 3872640 -145644397 + AT_rich Low_complexity Low_complexity 1 22 0 4 614 315 274 39 10 chr6 3873619 3873722 -145643315 + Tigger13a DNA MER2_type 115 220 -551 4 614 435 327 92 41 chr6 3873918 3874256 -145642781 + MLT1G1 LTR MaLR 61 415 -164 4 614 336 24 0 0 chr6 3875324 3875365 -145641672 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 4 614 23 33 0 0 chr6 3877792 3877822 -145639215 + AT_rich Low_complexity Low_complexity 1 30 0 4 614 405 0 0 0 chr6 3878200 3878245 -145638792 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 614 1588 144 17 164 chr6 3879130 3879545 -145637492 + RLTR24 LTR ERV1 1 354 -175 4 614 807 40 0 0 chr6 3879551 3879650 -145637387 + (TTTCC)n Simple_repeat Simple_repeat 5 103 0 4 614 6186 65 0 14 chr6 3879651 3880453 -145636584 - L1_Mus1 LINE L1 -2 6565 5775 4 614 1818 98 0 0 chr6 3880454 3880699 -145636338 + L1_Mus1 LINE L1 5510 5754 -129 4 614 976 165 56 11 chr6 3880700 3880878 -145636159 + RLTR24 LTR ERV1 344 529 0 4 614 22 0 0 0 chr6 3881282 3881304 -145635733 + AT_rich Low_complexity Low_complexity 1 22 0 4 614 507 107 0 0 chr6 3881324 3881399 -145635638 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 614 324 269 135 23 chr6 3881544 3881803 -145635234 + L1MDa LINE L1 1996 2283 -4350 4 614 698 200 77 0 chr6 3882976 3883106 -145633931 + B1_Mm SINE Alu 1 140 -7 4 614 290 281 42 50 chr6 3883164 3883284 -145633753 + L1MDa LINE L1 6011 6129 -504 4 614 547 272 162 14 chr6 3883424 3883707 -145633330 - MER44A DNA MER2_type -8 331 7 4 614 327 291 18 0 chr6 3883767 3883877 -145633160 - PB1D10 SINE Alu -5 112 1 4 614 973 233 17 22 chr6 3883978 3884210 -145632827 + RMER5 LTR ERV1 297 527 -7 4 614 264 59 0 0 chr6 3884413 3884447 -145632590 + (CAA)n Simple_repeat Simple_repeat 2 35 0 4 614 1179 204 36 12 chr6 3884785 3885033 -145632004 - RMER5 LTR ERV1 -278 256 3 4 614 744 259 26 11 chr6 3886002 3886193 -145630844 - B3 SINE B2 0 216 23 4 614 609 342 51 14 chr6 3886965 3887114 -145629923 - Lx9 LINE L1 -27 7617 7461 4 614 2112 166 99 109 chr6 3887114 3887648 -145629389 - RLTR24 LTR ERV1 0 529 1 5 614 609 342 51 14 chr6 3887648 3887868 -145629169 - Lx9 LINE L1 -184 7460 7235 4 614 23 86 0 0 chr6 3887923 3887981 -145629056 + AT_rich Low_complexity Low_complexity 1 58 0 5 614 1566 117 47 33 chr6 3888673 3888947 -145628090 + Lx LINE L1 6368 6645 -9 5 614 1130 82 0 0 chr6 3889029 3889176 -145627861 + B1_Mus2 SINE Alu 1 147 0 5 614 593 217 6 0 chr6 3890686 3890861 -145626176 + (TG)n Simple_repeat Simple_repeat 1 176 0 5 614 241 197 139 83 chr6 3890911 3890983 -145626054 - B4A SINE B4 0 292 217 5 614 683 296 64 27 chr6 3891017 3891236 -145625801 - B4A SINE B4 -46 246 20 5 614 22 35 0 0 chr6 3891557 3891586 -145625451 + AT_rich Low_complexity Low_complexity 1 29 0 5 614 554 148 23 15 chr6 3892728 3892858 -145624179 + GA-rich Low_complexity Low_complexity 3 133 0 5 614 438 69 0 0 chr6 3893347 3893405 -145623632 + (T)n Simple_repeat Simple_repeat 1 58 0 5 614 717 338 77 25 chr6 3894234 3894598 -145622439 + RMER15 LTR ERVL 188 570 -5 5 614 240 86 0 0 chr6 3895998 3896033 -145621004 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5 614 1034 99 0 0 chr6 3896033 3896174 -145620863 - B1_Mus1 SINE Alu -3 145 5 5 614 208 143 0 0 chr6 3896178 3896213 -145620824 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 5 614 545 268 92 0 chr6 3896602 3896744 -145620293 + B4A SINE B4 108 262 -30 5 614 180 77 0 0 chr6 3896780 3896806 -145620231 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 614 21 82 0 0 chr6 3896821 3896870 -145620167 + AT_rich Low_complexity Low_complexity 1 49 0 5 614 276 305 95 6 chr6 3897267 3897435 -145619602 + L1M5 LINE L1 5259 5441 -1003 5 614 222 118 0 0 chr6 3897496 3897530 -145619507 + (CAA)n Simple_repeat Simple_repeat 3 36 0 5 614 1449 93 0 24 chr6 3899812 3900020 -145617017 - Lx LINE L1 -271 6383 6181 5 614 1456 110 31 35 chr6 3900029 3900284 -145616753 + Lx LINE L1 6393 6646 -8 5 614 408 303 60 100 chr6 3900782 3901083 -145615954 + B4 SINE B4 4 292 0 5 614 464 100 12 0 chr6 3901104 3901184 -145615853 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 614 364 289 65 22 chr6 3901300 3901438 -145615599 + L1MDb LINE L1 138 281 -6259 5 614 355 321 149 17 chr6 3901864 3902443 -145614594 + L1MDb LINE L1 1714 2382 -4251 5 614 253 307 87 29 chr6 3902537 3902745 -145614292 + L1MDb LINE L1 2543 2762 -3775 5 614 22 35 0 0 chr6 3903138 3903167 -145613870 + AT_rich Low_complexity Low_complexity 1 29 0 5 614 731 297 25 73 chr6 3903281 3903608 -145613429 - MTD LTR MaLR -108 311 1 5 614 402 238 19 29 chr6 3905804 3905908 -145611129 + B4A SINE B4 185 287 -5 5 614 297 135 0 0 chr6 3905920 3905972 -145611065 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 614 772 291 151 56 chr6 3905979 3906650 -145610387 + L1MA9 LINE L1 5018 5780 -532 5 614 288 53 0 0 chr6 3906650 3906688 -145610349 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 5 614 772 295 145 76 chr6 3906688 3907167 -145609870 + L1MA9 LINE L1 5781 6273 -39 5 614 735 315 59 8 chr6 3908079 3908199 -145608838 + B4A SINE B4 1 122 -170 5 614 456 19 0 0 chr6 3908199 3908252 -145608785 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 614 735 315 59 8 chr6 3908252 3908387 -145608650 + B4A SINE B4 123 268 -24 5 614 1401 159 79 69 chr6 3909558 3909876 -145607161 - ORR1A4 LTR MaLR -8 321 1 5 614 426 203 0 0 chr6 3910261 3910379 -145606658 + (TG)n Simple_repeat Simple_repeat 1 118 0 5 614 315 299 49 55 chr6 3910402 3910565 -145606472 - L1MC4 LINE L1 -1014 7028 6867 5 614 3552 72 57 14 chr6 3910960 3911453 -145605584 - L1_Mus1 LINE L1 -1 6566 6053 5 614 3290 66 27 0 chr6 3911455 3911894 -145605143 + L1_Mus1 LINE L1 5594 6044 -522 5 614 354 98 0 0 chr6 3914197 3914248 -145602789 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 614 306 73 0 0 chr6 3914623 3914664 -145602373 + (A)n Simple_repeat Simple_repeat 1 41 0 5 614 342 61 0 0 chr6 3915170 3915219 -145601818 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 5 614 4425 41 30 11 chr6 3915665 3916227 -145600810 - L1Md_F2 LINE L1 -157 6425 5853 5 614 1033 66 7 13 chr6 3916231 3916385 -145600652 + L1Md_F2 LINE L1 6430 6582 0 5 614 351 0 0 0 chr6 3916408 3916447 -145600590 + (A)n Simple_repeat Simple_repeat 1 39 0 5 614 235 313 95 55 chr6 3916447 3916721 -145600316 + L1M2 LINE L1 5545 5829 -468 5 614 456 51 0 0 chr6 3917003 3917062 -145599975 + (TATG)n Simple_repeat Simple_repeat 3 61 0 5 614 555 172 30 0 chr6 3918903 3919002 -145598035 - ID_B1 SINE B4 -1 223 122 5 614 233 286 0 0 chr6 3919081 3919158 -145597879 - L1ME2 LINE L1 -193 5971 5895 5 614 201 167 16 62 chr6 3919161 3919225 -145597812 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 5 614 419 279 15 69 chr6 3919230 3919361 -145597676 - ID_B1 SINE B4 -7 217 94 5 614 270 0 0 0 chr6 3920665 3920695 -145596342 + (T)n Simple_repeat Simple_repeat 1 30 0 5 614 235 240 114 129 chr6 3921090 3921291 -145595746 + MT2B2 LTR ERVL 192 389 -195 5 614 9745 96 12 22 chr6 3921291 3922762 -145594275 - L1_Mm LINE L1 -1011 4872 3417 5 614 1123 63 0 0 chr6 3922764 3922906 -145594131 - L1_Mus1 LINE L1 -445 6122 5981 5 614 3532 82 2 16 chr6 3922906 3923392 -145593645 + L1_Mus1 LINE L1 6084 6562 -5 5 614 368 105 0 0 chr6 3923392 3923449 -145593588 - L1_Mm LINE L1 -2498 3385 3329 5 614 223 358 16 24 chr6 3924489 3924612 -145592425 - MIR SINE MIR -67 141 20 5 614 315 0 0 0 chr6 3925273 3925308 -145591729 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 614 268 351 81 7 chr6 3925335 3925484 -145591553 - L2 LINE L2 -1159 2260 2101 5 614 241 308 11 32 chr6 3926384 3926478 -145590559 - Lx9 LINE L1 -318 7326 7235 5 614 1183 179 68 8 chr6 3926476 3926740 -145590297 + Lx9 LINE L1 7362 7641 -3 5 614 187 333 15 0 chr6 3927393 3927459 -145589578 + L2 LINE L2 2395 2461 -958 5 614 21 0 0 0 chr6 3927479 3927500 -145589537 + AT_rich Low_complexity Low_complexity 1 21 0 5 614 1074 77 0 7 chr6 3927707 3927851 -145589186 - B1_Mus1 SINE Alu -4 144 2 5 614 667 312 9 14 chr6 3927953 3928164 -145588873 + Lx7 LINE L1 7025 7234 -462 5 614 3709 138 48 76 chr6 3928170 3928393 -145588644 - RMER6A LTR ERVK 0 756 533 5 614 2067 63 28 0 chr6 3928393 3928678 -145588359 + L1_Mus1 LINE L1 6264 6556 -11 5 614 441 0 0 0 chr6 3928680 3928729 -145588308 + (TAA)n Simple_repeat Simple_repeat 2 50 0 5 614 3709 138 48 76 chr6 3928729 3929280 -145587757 - RMER6A LTR ERVK -224 532 1 5 614 227 243 164 10 chr6 3929287 3929391 -145587646 + Lx7 LINE L1 7244 7363 -333 5 614 295 23 22 22 chr6 3929392 3929437 -145587600 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 614 516 216 29 36 chr6 3929438 3929577 -145587460 - RMER5 LTR ERV1 -372 162 25 5 614 21 36 0 0 chr6 3930256 3930284 -145586753 + AT_rich Low_complexity Low_complexity 1 28 0 5 614 403 200 61 79 chr6 3930607 3930721 -145586316 + B3A SINE B2 4 115 -83 5 76 352 0 42 0 chr6 3932140 3932188 -145584849 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 615 336 287 48 16 chr6 3932217 3932341 -145584696 - B3A SINE B2 -69 129 2 5 615 25 31 0 0 chr6 3932343 3932375 -145584662 + AT_rich Low_complexity Low_complexity 1 32 0 5 615 24 32 0 0 chr6 3932688 3932719 -145584318 + AT_rich Low_complexity Low_complexity 1 31 0 5 615 261 0 0 0 chr6 3932807 3932836 -145584201 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 615 1014 61 30 0 chr6 3934310 3934441 -145582596 + B1_Mus2 SINE Alu 1 135 -12 5 615 8041 116 17 5 chr6 3934584 3936592 -145580445 + L1_Mus4 LINE L1 4601 6630 -6 5 615 1167 48 0 14 chr6 3936597 3936745 -145580292 + B1_Mus2 SINE Alu 1 146 -1 5 615 21 0 0 0 chr6 3937551 3937572 -145579465 + AT_rich Low_complexity Low_complexity 1 21 0 5 615 735 194 58 0 chr6 3938120 3938259 -145578778 + B1_Mur4 SINE Alu 4 150 0 5 615 213 212 11 56 chr6 3938275 3938365 -145578672 + A-rich Low_complexity Low_complexity 1 86 0 5 615 227 109 21 42 chr6 3938302 3938350 -145578687 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 615 695 333 33 30 chr6 3938738 3939075 -145577962 - RMER5 LTR ERV1 -116 418 81 5 615 200 214 18 0 chr6 3939145 3939201 -145577836 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 5 615 231 36 0 0 chr6 3939202 3939230 -145577807 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 615 226 317 41 16 chr6 3940593 3940715 -145576322 - MER20B DNA MER1_type -450 333 209 5 615 207 100 0 0 chr6 3941300 3941330 -145575707 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 615 280 336 57 57 chr6 3941354 3941477 -145575560 - RSINE1 SINE B4 -38 127 5 5 615 405 329 115 75 chr6 3941916 3942343 -145574694 - LTR16A1 LTR ERVL -9 447 4 5 615 468 0 0 0 chr6 3944124 3944176 -145572861 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 615 315 288 82 22 chr6 3944487 3944622 -145572415 + MER58C DNA MER1_type 1 143 -72 5 615 270 0 0 0 chr6 3945599 3945629 -145571408 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 615 426 341 61 28 chr6 3945748 3945962 -145571075 - MLT1A0 LTR MaLR -134 231 11 5 615 228 231 123 0 chr6 3946159 3946224 -145570813 - L2a LINE L2 -43 3383 3311 5 615 30 0 0 0 chr6 3946862 3946892 -145570145 + AT_rich Low_complexity Low_complexity 1 30 0 5 615 1119 76 7 0 chr6 3947100 3947245 -145569792 - B1_Mus1 SINE Alu -1 147 2 5 615 29 28 0 0 chr6 3950233 3950269 -145566768 + AT_rich Low_complexity Low_complexity 1 36 0 5 615 22 56 0 0 chr6 3950413 3950449 -145566588 + AT_rich Low_complexity Low_complexity 1 36 0 5 615 232 236 18 0 chr6 3950497 3950552 -145566485 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 615 823 314 128 24 chr6 3950861 3951445 -145565592 - Lx8 LINE L1 -244 7229 6585 5 615 431 345 46 73 chr6 3951448 3951667 -145565370 - B4A SINE B4 -71 221 9 5 615 36 23 0 0 chr6 3951859 3951902 -145565135 + AT_rich Low_complexity Low_complexity 1 43 0 5 615 183 42 0 0 chr6 3952680 3952704 -145564333 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 615 315 0 0 0 chr6 3953801 3953836 -145563201 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 615 621 0 0 0 chr6 3953836 3953904 -145563133 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 615 396 0 0 0 chr6 3954922 3954966 -145562071 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 615 401 185 12 24 chr6 3954969 3955052 -145561985 + ID_B1 SINE B4 86 167 -57 6 615 1748 128 64 49 chr6 3955289 3955635 -145561402 - Lx3B LINE L1 -4 6969 6619 6 615 633 148 8 15 chr6 3959000 3959130 -145557907 + CT-rich Low_complexity Low_complexity 3 131 0 6 615 548 264 78 39 chr6 3960590 3960897 -145556140 - L1MD LINE L1 -1004 5142 4824 6 615 361 289 12 0 chr6 3961086 3961169 -145555868 + ID_B1 SINE B4 94 177 -47 6 615 310 333 42 0 chr6 3961169 3961182 -145555855 + B1_Mur2 SINE Alu 13 112 -37 6 615 377 399 12 6 chr6 3961645 3961814 -145555223 + L1MDa LINE L1 836 1005 -5535 6 615 321 336 49 28 chr6 3961829 3961973 -145555064 + L1MDa LINE L1 1064 1210 -5330 6 615 633 237 38 0 chr6 3961973 3962104 -145554933 + B1_Mur3 SINE Alu 9 144 -5 6 615 335 300 165 37 chr6 3962123 3962445 -145554592 + L1MDa LINE L1 1191 1553 -4987 6 615 398 298 52 68 chr6 3962476 3962636 -145554401 + L1MDa LINE L1 1594 1743 -4890 6 615 638 275 48 29 chr6 3962636 3962846 -145554191 - B3 SINE B2 -1 215 2 6 615 398 298 52 68 chr6 3962846 3963067 -145553970 + L1MDa LINE L1 1744 1969 -4664 6 615 188 221 56 56 chr6 3963302 3963374 -145553663 - L2a LINE L2 -1 3425 3354 6 615 802 203 0 7 chr6 3963408 3963552 -145553485 - B1_Mur1 SINE Alu -2 147 5 6 615 207 139 0 0 chr6 3964003 3964039 -145552998 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 615 627 288 41 40 chr6 3965146 3965425 -145551612 + MTE2b LTR MaLR 5 324 -46 6 615 789 67 0 0 chr6 3965428 3965532 -145551505 + (GGA)n Simple_repeat Simple_repeat 3 106 0 6 615 21 0 0 0 chr6 3965898 3965919 -145551118 + AT_rich Low_complexity Low_complexity 1 21 0 6 615 459 352 170 25 chr6 3965976 3966446 -145550591 - MLT1H LTR MaLR -8 541 4 6 615 24 53 0 0 chr6 3968906 3968944 -145548093 + AT_rich Low_complexity Low_complexity 1 38 0 6 615 274 288 0 0 chr6 3969638 3969704 -145547333 - MER58B DNA MER1_type -96 245 180 6 615 309 26 0 0 chr6 3969896 3969934 -145547103 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 615 330 254 60 53 chr6 3970072 3970205 -145546832 + MER77 LTR ERVL 55 188 -419 6 615 638 318 56 18 chr6 3970244 3970529 -145546508 + MER77 LTR ERVL 300 595 -12 6 615 187 333 18 0 chr6 3970636 3970693 -145546344 - MIR SINE MIR -115 93 36 6 615 294 403 25 30 chr6 3970749 3970951 -145546086 - MIRb SINE MIR -33 235 35 6 615 35 0 0 0 chr6 3971295 3971330 -145545707 + AT_rich Low_complexity Low_complexity 1 35 0 6 615 1280 264 31 86 chr6 3971435 3971817 -145545220 + MTE2b LTR MaLR 11 371 -8 6 615 272 314 128 30 chr6 3973445 3973609 -145543428 - LTR85c LTR Gypsy? -231 592 413 6 615 437 163 41 28 chr6 3974631 3974776 -145542261 + (CATATA)n Simple_repeat Simple_repeat 4 150 0 6 615 432 0 0 0 chr6 3975674 3975722 -145541315 + (CAGT)n Simple_repeat Simple_repeat 4 51 0 6 615 1345 281 87 8 chr6 3975854 3976224 -145540813 + MTD LTR MaLR 7 405 -14 6 615 266 26 0 50 chr6 3976866 3976906 -145540131 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 6 615 495 0 0 0 chr6 3978608 3978663 -145538374 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 615 243 0 0 0 chr6 3978663 3978690 -145538347 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 615 708 317 35 42 chr6 3978704 3978964 -145538073 - B4 SINE B4 0 292 35 6 615 28 0 0 0 chr6 3979447 3979475 -145537562 + AT_rich Low_complexity Low_complexity 1 28 0 6 615 210 136 0 0 chr6 3981370 3981414 -145535623 + (T)n Simple_repeat Simple_repeat 1 44 0 6 615 182 37 37 0 chr6 3981861 3981888 -145535149 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 6 615 192 125 0 0 chr6 3981927 3981959 -145535078 + (TCC)n Simple_repeat Simple_repeat 2 33 0 6 615 235 239 25 42 chr6 3982067 3982185 -145534852 - Lx8 LINE L1 -4 7469 7354 6 615 284 277 106 0 chr6 3982361 3982455 -145534582 - B1F1 SINE Alu -8 141 38 6 615 394 202 6 6 chr6 3982481 3982655 -145534382 + CT-rich Low_complexity Low_complexity 2 175 0 6 615 748 273 48 78 chr6 3983055 3983371 -145533666 - RLTR11A2 LTR ERVK -24 504 121 6 615 1755 122 105 0 chr6 3983371 3983667 -145533370 - ORR1A4 LTR MaLR -2 327 1 6 615 748 269 19 73 chr6 3983667 3983804 -145533233 - RLTR11A2 LTR ERVK -389 138 3 6 615 21 0 0 0 chr6 3984471 3984492 -145532545 + AT_rich Low_complexity Low_complexity 1 21 0 6 615 268 164 30 0 chr6 3984619 3984686 -145532351 + (CACAC)n Simple_repeat Simple_repeat 5 73 0 6 615 1100 283 59 3 chr6 3986024 3986347 -145530690 - MTE2b LTR MaLR -31 348 8 6 615 520 278 0 0 chr6 3987318 3987433 -145529604 + ID_B1 SINE B4 103 217 -7 6 615 243 231 58 0 chr6 3987387 3987439 -145529598 + PB1D9 SINE Alu 65 119 -1 6 615 1371 188 48 24 chr6 3987564 3987858 -145529179 + MTB_Mm LTR MaLR 1 301 -106 6 615 7702 31 0 2 chr6 3987865 3988816 -145528221 - L1Md_A LINE L1 0 6582 5634 6 615 370 220 110 0 chr6 3988816 3988907 -145528130 + MTB_Mm LTR MaLR 319 419 0 6 615 4384 91 13 2 chr6 3989004 3989611 -145527426 + L1_Mus1 LINE L1 5954 6567 0 6 615 889 99 21 0 chr6 3989690 3989832 -145527205 + (GAAA)n Simple_repeat Simple_repeat 2 146 0 6 615 23 0 0 0 chr6 3990908 3990931 -145526106 + AT_rich Low_complexity Low_complexity 1 23 0 6 615 4296 94 8 34 chr6 3990955 3991572 -145525465 + MT2B LTR ERVL 1 601 0 6 615 279 260 0 0 chr6 3992251 3992328 -145524709 - Tigger13a DNA MER2_type -58 713 637 6 615 5262 126 15 2 chr6 3992435 3993311 -145523726 - Lx9 LINE L1 -1724 5920 5037 6 615 5439 75 7 4 chr6 3993312 3994039 -145522998 + L1_Mus3 LINE L1 5910 6638 0 6 615 320 280 90 15 chr6 3994150 3994284 -145522753 - Tigger13a DNA MER2_type -442 329 186 6 615 474 306 19 64 chr6 3994691 3994705 -145522332 - RSINE1 SINE B4 -12 153 141 6 615 390 42 0 0 chr6 3994705 3994753 -145522284 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 615 474 306 19 64 chr6 3994753 3994895 -145522142 - RSINE1 SINE B4 -25 140 4 6 615 348 24 0 0 chr6 3995655 3995696 -145521341 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 615 2390 82 28 0 chr6 3996687 3997005 -145520032 + ORR1A2 LTR MaLR 1 327 0 6 615 886 282 123 12 chr6 3997304 3997645 -145519392 - MTE2b LTR MaLR 0 379 1 6 615 462 36 0 0 chr6 3997824 3997880 -145519157 + (CAA)n Simple_repeat Simple_repeat 3 58 0 6 615 36 40 0 0 chr6 3998552 3998602 -145518435 + AT_rich Low_complexity Low_complexity 1 50 0 6 615 492 216 0 39 chr6 3999169 3999299 -145517738 - Lx2B LINE L1 -1 6999 6875 6 615 513 0 0 0 chr6 3999745 3999802 -145517235 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 615 21 71 0 0 chr6 4000112 4000154 -145516883 + AT_rich Low_complexity Low_complexity 1 42 0 1 615 201 74 0 0 chr6 4000911 4000938 -145516099 + (T)n Simple_repeat Simple_repeat 1 27 0 2 615 376 304 211 24 chr6 4000961 4001207 -145515830 + B4A SINE B4 1 292 0 3 615 928 322 64 50 chr6 4001719 4002297 -145514740 - MER97c DNA MER1_type? -504 586 1 4 615 371 280 31 16 chr6 4002561 4002688 -145514349 + MER97c DNA MER1_type? 570 698 -392 5 615 1159 261 107 27 chr6 4002844 4003218 -145513819 - RCHARR1 DNA MER1_type -540 434 31 6 615 243 331 53 64 chr6 4003360 4003531 -145513506 + MLT1L LTR MaLR 442 610 0 7 615 22 35 0 0 chr6 4006759 4006788 -145510249 + AT_rich Low_complexity Low_complexity 1 29 0 8 615 239 310 11 54 chr6 4007774 4007866 -145509171 + MER94 DNA AcHobo 35 122 -12 9 615 276 269 202 39 chr6 4008424 4008631 -145508406 - MIRc SINE MIR -6 256 19 1 615 4519 129 18 14 chr6 4008720 4009451 -145507586 + Lx2B LINE L1 6267 7000 0 1 615 767 305 117 59 chr6 4010524 4011206 -145505831 + L1MC4a LINE L1 6116 6848 -1034 1 615 822 286 74 12 chr6 4011531 4011789 -145505248 - MTE2b LTR MaLR -20 359 86 1 615 829 281 119 78 chr6 4011795 4012090 -145504947 - MTE-int LTR MaLR 0 1580 1316 1 615 348 311 119 11 chr6 4012089 4012274 -145504763 + MTE2a LTR MaLR 22 202 -177 1 615 719 294 46 18 chr6 4012273 4012491 -145504546 - MTE-int LTR MaLR -627 953 730 1 615 273 211 0 0 chr6 4012487 4012539 -145504498 - MT2A LTR ERVL -481 52 1 1 615 615 301 148 36 chr6 4012638 4013248 -145503789 + L1MC4a LINE L1 7147 7824 -58 1 615 21 0 0 0 chr6 4015828 4015849 -145501188 + AT_rich Low_complexity Low_complexity 1 21 0 1 615 27 0 0 0 chr6 4016311 4016338 -145500699 + AT_rich Low_complexity Low_complexity 1 27 0 1 615 225 303 0 43 chr6 4016656 4016725 -145500312 + ORR1E LTR MaLR 260 325 -34 1 615 2808 62 70 8 chr6 4017095 4017468 -145499569 + MTA_Mm LTR MaLR 1 396 0 2 615 797 350 47 25 chr6 4017644 4017922 -145499115 + B4A SINE B4 4 287 -5 2 615 297 0 0 0 chr6 4017931 4017964 -145499073 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 615 278 67 22 0 chr6 4018661 4018706 -145498331 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 615 707 292 61 47 chr6 4019473 4019750 -145497287 - Lx8 LINE L1 -1 7472 7192 2 615 25 0 0 0 chr6 4020333 4020358 -145496679 + AT_rich Low_complexity Low_complexity 1 25 0 2 615 214 29 28 28 chr6 4021086 4021122 -145495915 + (TATAA)n Simple_repeat Simple_repeat 2 37 0 2 615 183 204 109 18 chr6 4022155 4022210 -145494827 - MIRb SINE MIR -30 238 179 2 615 290 237 21 31 chr6 4023119 4023215 -145493822 - Lx9 LINE L1 -8 7636 7542 2 615 396 0 0 0 chr6 4023222 4023266 -145493771 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 615 545 229 63 13 chr6 4023320 4023479 -145493558 - Lx9 LINE L1 -213 7431 7265 2 615 338 294 224 6 chr6 4024807 4024968 -145492069 - B3A SINE B2 -2 196 1 3 615 680 255 122 15 chr6 4024970 4025247 -145491790 + Lx5 LINE L1 5954 6269 -781 3 615 28 29 0 0 chr6 4025247 4025282 -145491755 + AT_rich Low_complexity Low_complexity 1 35 0 3 615 1869 272 98 31 chr6 4025298 4025840 -145491197 + Lx5 LINE L1 6455 7032 -18 3 615 261 0 0 0 chr6 4026089 4026118 -145490919 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 615 3078 30 0 0 chr6 4026481 4026842 -145490195 + L1Md_F2 LINE L1 5587 5947 -635 3 615 263 194 0 95 chr6 4028500 4028574 -145488463 + 4.5SRNA scRNA scRNA 22 88 -6 3 615 467 114 25 0 chr6 4028522 4028601 -145488436 + PB1D9 SINE Alu 40 120 0 3 615 317 82 0 20 chr6 4028602 4028652 -145488385 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 3 615 240 364 0 27 chr6 4028818 4028928 -145488109 - MER5A DNA MER1_type -22 167 61 3 615 252 100 0 0 chr6 4029634 4029674 -145487363 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 3 615 883 86 54 61 chr6 4029713 4029861 -145487176 - B1_Mus1 SINE Alu 0 148 2 4 615 222 37 0 0 chr6 4030290 4030317 -145486720 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 615 21 36 0 0 chr6 4036044 4036072 -145480965 + AT_rich Low_complexity Low_complexity 1 28 0 4 615 486 204 0 0 chr6 4037398 4037501 -145479536 + (TATG)n Simple_repeat Simple_repeat 2 104 0 4 615 686 330 201 6 chr6 4037728 4038259 -145478778 - MER45B DNA Tip100 -396 644 11 4 615 24 77 0 0 chr6 4038901 4038953 -145478084 + AT_rich Low_complexity Low_complexity 1 52 0 4 615 22 0 0 0 chr6 4039718 4039740 -145477297 + AT_rich Low_complexity Low_complexity 1 22 0 4 615 672 189 271 6 chr6 4039876 4040046 -145476991 + RMER19B LTR ERVK 309 523 -379 4 615 1338 216 147 84 chr6 4040106 4040570 -145476467 - RLTR16 LTR ERVK -12 493 1 4 615 1547 197 9 25 chr6 4040570 4040885 -145476152 + RMER19C LTR ERVK 300 609 -2 4 615 2658 226 108 39 chr6 4041241 4041991 -145475046 - RLTR40 LTR ERVK -5 812 11 5 615 35366 50 0 5 chr6 4042092 4047757 -145469280 + L1Md_T LINE L1 1 5588 -298 5 615 8297 37 0 4 chr6 4047758 4048757 -145468280 + L1Md_T LINE L1 5590 6584 -1 5 615 37 62 0 0 chr6 4048855 4048920 -145468117 + AT_rich Low_complexity Low_complexity 1 65 0 5 615 293 328 31 8 chr6 4049432 4049561 -145467476 - LTR16A LTR ERVL -285 166 35 5 615 249 33 0 0 chr6 4049851 4049881 -145467156 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 615 239 216 0 0 chr6 4050282 4050333 -145466704 - RLTR11B LTR ERVK -31 422 372 5 615 628 226 0 58 chr6 4050351 4050506 -145466531 - RLTR11B LTR ERVK -307 146 1 5 615 283 247 126 54 chr6 4050779 4050946 -145466091 - ORSL-2b DNA Tip100 -207 301 123 5 615 450 96 57 36 chr6 4051004 4051144 -145465893 + (TAGA)n Simple_repeat Simple_repeat 3 145 0 5 615 374 222 0 18 chr6 4051144 4051254 -145465783 + (TA)n Simple_repeat Simple_repeat 1 108 0 5 615 434 239 18 23 chr6 4051322 4051493 -145465544 + (TA)n Simple_repeat Simple_repeat 1 170 0 5 615 247 159 0 42 chr6 4051513 4051585 -145465452 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 6 615 198 0 0 0 chr6 4051691 4051713 -145465324 + (T)n Simple_repeat Simple_repeat 1 22 0 6 615 240 35 0 0 chr6 4052842 4052871 -145464166 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 615 233 247 148 34 chr6 4055334 4055510 -145461527 - L1M5 LINE L1 -1903 4243 4048 6 615 1211 48 0 0 chr6 4055706 4055853 -145461184 - B1_Mm SINE Alu 0 147 1 6 615 213 81 0 51 chr6 4056200 4056239 -145460798 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 615 431 285 104 31 chr6 4056486 4056649 -145460388 + B3A SINE B2 6 180 -18 6 615 7431 69 4 1 chr6 4057179 4058434 -145458603 + L1_Mus1 LINE L1 5309 6567 0 6 615 1528 53 0 11 chr6 4058517 4058708 -145458329 - B2_Mm1a SINE B2 -2 191 3 6 615 651 75 0 0 chr6 4058736 4058830 -145458207 + (TC)n Simple_repeat Simple_repeat 2 95 0 6 615 195 42 0 0 chr6 4058830 4058854 -145458183 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 615 737 203 67 48 chr6 4059879 4060165 -145456872 + Lx7 LINE L1 7174 7675 -21 7 615 836 295 37 48 chr6 4060466 4060761 -145456276 + B4A SINE B4 1 292 0 7 615 186 133 0 0 chr6 4061318 4061348 -145455689 + (TTCTCC)n Simple_repeat Simple_repeat 2 31 0 7 615 958 78 0 27 chr6 4061348 4061533 -145455504 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 615 344 277 80 7 chr6 4062680 4062818 -145454219 + B1_Mur1 SINE Alu 2 149 0 7 76 7187 77 3 14 chr6 4062897 4063944 -145453093 - L1Md_F2 LINE L1 -14 6568 5561 7 616 2399 72 144 3 chr6 4064756 4064906 -145452131 - RLTR9F LTR ERVK -4 411 243 7 616 252 0 0 0 chr6 4064906 4064934 -145452103 + (C)n Simple_repeat Simple_repeat 1 28 0 7 616 2399 72 144 3 chr6 4064934 4065143 -145451894 - RLTR9F LTR ERVK -173 242 2 7 616 231 206 66 40 chr6 4065317 4065393 -145451644 + MTE2b LTR MaLR 287 364 -15 7 616 284 0 28 0 chr6 4067144 4067180 -145449857 + (CATA)n Simple_repeat Simple_repeat 4 40 0 8 616 3009 49 199 12 chr6 4067186 4067617 -145449420 + RLTR1B LTR ERV1 1 512 0 8 616 187 352 74 82 chr6 4067669 4067926 -145449111 + L2 LINE L2 2176 2430 -989 8 616 206 108 0 51 chr6 4068938 4068977 -145448060 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 8 616 933 75 82 0 chr6 4069480 4069574 -145447463 - B1_Mus2 SINE Alu -2 145 52 8 616 195 42 0 0 chr6 4069574 4069598 -145447439 + (C)n Simple_repeat Simple_repeat 1 24 0 8 616 933 75 82 0 chr6 4069598 4069637 -145447400 - B1_Mus2 SINE Alu -96 51 2 8 616 223 283 0 0 chr6 4069721 4069781 -145447256 - B1F SINE Alu -11 138 79 8 616 1027 20 59 0 chr6 4070218 4070424 -145446613 + (TC)n Simple_repeat Simple_repeat 1 218 0 8 616 262 302 51 122 chr6 4071169 4071267 -145445770 + MTEa LTR MaLR 289 379 0 8 616 441 296 40 8 chr6 4071424 4071550 -145445487 + MLT1A1 LTR MaLR 279 408 0 8 616 237 260 12 49 chr6 4071561 4071642 -145445395 - LTR90A LTR LTR -817 159 82 9 616 22 0 0 0 chr6 4073538 4073560 -145443477 + AT_rich Low_complexity Low_complexity 1 22 0 9 616 312 304 92 0 chr6 4073784 4073991 -145443046 - L1MD3 LINE L1 -70 7925 7700 9 616 21 0 0 0 chr6 4074371 4074392 -145442645 + AT_rich Low_complexity Low_complexity 1 21 0 9 616 578 321 24 18 chr6 4074943 4075111 -145441926 + B3A SINE B2 1 169 -29 9 616 414 0 0 0 chr6 4075113 4075159 -145441878 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 616 1049 258 125 20 chr6 4075290 4075594 -145441443 + MER2 DNA MER2_type 10 345 0 9 616 277 356 51 17 chr6 4075777 4075894 -145441143 + MLT1A0 LTR MaLR 1 121 -244 9 616 5760 204 55 20 chr6 4075899 4077444 -145439593 + Lx6 LINE L1 5486 7077 -383 9 616 830 301 63 18 chr6 4077867 4078357 -145438680 + L1MA5 LINE L1 5785 6296 -4 9 616 321 320 95 7 chr6 4078773 4078921 -145438116 - MER58B DNA MER1_type 0 341 181 1 616 191 299 33 33 chr6 4079318 4079408 -145437629 - L3 LINE CR1 -3048 1441 1352 1 616 242 241 34 22 chr6 4080797 4080886 -145436151 + (CATA)n Simple_repeat Simple_repeat 3 92 0 1 616 552 76 29 57 chr6 4080968 4081108 -145435929 + (TCTG)n Simple_repeat Simple_repeat 4 139 0 1 616 369 340 49 0 chr6 4082837 4082981 -145434056 + MLT1F1 LTR MaLR 5 155 -414 1 616 294 330 55 0 chr6 4083146 4083255 -145433782 + MLT1F1 LTR MaLR 433 547 -13 1 616 216 247 0 83 chr6 4083802 4083886 -145433151 + MIRb SINE MIR 93 169 -99 1 616 305 214 0 16 chr6 4084701 4084787 -145432250 + Lx9 LINE L1 7411 7470 -174 1 616 28 29 0 0 chr6 4084790 4084825 -145432212 + AT_rich Low_complexity Low_complexity 1 35 0 1 616 284 237 17 26 chr6 4084826 4084943 -145432094 + (TA)n Simple_repeat Simple_repeat 2 117 0 1 616 882 158 184 0 chr6 4085837 4086027 -145431010 - URR1B DNA MER1_type 0 225 1 1 616 21 0 0 0 chr6 4087193 4087214 -145429823 + AT_rich Low_complexity Low_complexity 1 21 0 1 616 2040 91 0 0 chr6 4088055 4088342 -145428695 - L1Md_F2 LINE L1 -352 6230 5944 1 616 2440 81 24 9 chr6 4088342 4088680 -145428357 + L1_Mus1 LINE L1 6225 6567 0 1 616 185 333 55 96 chr6 4090291 4090437 -145426600 + L4 LINE RTE 1478 1617 -412 1 616 222 342 25 25 chr6 4090494 4090614 -145426423 + MER5A DNA MER1_type 65 184 -5 1 616 187 238 212 12 chr6 4091242 4091327 -145425710 + MIR SINE MIR 56 157 -105 1 616 189 0 0 0 chr6 4091739 4091760 -145425277 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1 616 7882 84 12 0 chr6 4091768 4093623 -145423414 - L1_Mus1 LINE L1 -19 6548 4668 1 616 842 130 0 0 chr6 4093629 4093760 -145423277 + L1_Mm LINE L1 4490 4620 -1263 1 616 2480 62 0 3 chr6 4093927 4094295 -145422742 + L1Md_T LINE L1 6262 6582 0 1 616 212 282 25 37 chr6 4094669 4094750 -145422287 + MIRb SINE MIR 167 246 -22 1 616 468 0 0 0 chr6 4095077 4095129 -145421908 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 616 274 378 65 33 chr6 4095251 4095404 -145421633 + MamGypLTR1b LTR Gypsy 409 566 -216 1 616 376 350 55 14 chr6 4095719 4095864 -145421173 - MER5A DNA MER1_type -29 160 10 1 616 26 0 0 0 chr6 4095993 4096019 -145421018 + AT_rich Low_complexity Low_complexity 1 26 0 1 616 459 272 78 0 chr6 4096020 4096200 -145420837 - L1MA5 LINE L1 -24 6276 6083 1 616 314 309 30 60 chr6 4096729 4096863 -145420174 + MIRb SINE MIR 13 142 -126 1 616 219 250 0 45 chr6 4097349 4097437 -145419600 + (CAGAGA)n Simple_repeat Simple_repeat 4 87 0 1 616 1330 57 28 11 chr6 4098077 4098256 -145418781 + B2_Mm2 SINE B2 5 186 -9 1 616 1132 58 0 0 chr6 4098274 4098412 -145418625 + B1_Mus1 SINE Alu 2 139 -9 1 616 206 81 27 0 chr6 4098414 4098451 -145418586 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 616 1035 306 87 5 chr6 4099653 4100021 -145417016 + MTD LTR MaLR 1 398 -21 1 616 588 304 6 54 chr6 4100332 4100499 -145416538 + RSINE1 SINE B4 7 165 0 1 616 264 281 12 0 chr6 4100509 4100591 -145416446 + (CATA)n Simple_repeat Simple_repeat 1 83 0 1 616 371 283 13 52 chr6 4101523 4101676 -145415361 + Lx7 LINE L1 5656 5802 -1894 1 616 237 289 55 11 chr6 4101807 4101898 -145415139 - MLT1F2 LTR MaLR -8 552 458 1 616 369 0 0 0 chr6 4102097 4102138 -145414899 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 1 616 271 347 120 8 chr6 4102429 4102554 -145414483 + MIRc SINE MIR 33 171 -97 1 616 191 229 0 28 chr6 4103147 4103219 -145413818 + (CATA)n Simple_repeat Simple_repeat 2 71 0 1 616 697 163 8 0 chr6 4103466 4103589 -145413448 - ORR1C1 LTR MaLR -254 124 1 1 616 1482 119 5 0 chr6 4104290 4104509 -145412528 - Lx2 LINE L1 0 6997 6778 1 616 837 179 189 0 chr6 4104549 4104739 -145412298 - URR1A DNA MER1_type 0 226 1 1 616 6029 61 10 11 chr6 4104843 4105645 -145411392 + L1_Mus3 LINE L1 5838 6638 0 1 616 1473 36 0 0 chr6 4106215 4106462 -145410575 + (TG)n Simple_repeat Simple_repeat 1 247 0 1 616 292 321 28 69 chr6 4106462 4106606 -145410431 - RSINE1 SINE B4 -24 141 4 1 616 892 286 133 62 chr6 4107394 4107733 -145409304 + MTEb LTR MaLR 15 377 -2 1 616 480 35 0 0 chr6 4107786 4107844 -145409193 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 616 261 0 0 0 chr6 4107844 4107872 -145409165 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 616 271 246 8 25 chr6 4107992 4108113 -145408924 + CT-rich Low_complexity Low_complexity 2 120 0 1 616 6103 129 60 10 chr6 4108400 4109437 -145407600 + RLTR25A LTR ERVK 15 1103 0 1 616 428 273 158 0 chr6 4109807 4109990 -145407047 - MLT1D LTR MaLR -23 482 271 1 616 183 267 142 22 chr6 4110306 4110440 -145406597 - L3 LINE CR1 -1089 3400 3251 1 616 223 221 58 0 chr6 4111483 4111587 -145405450 + (TA)n Simple_repeat Simple_repeat 1 110 0 1 616 228 234 58 115 chr6 4112555 4112642 -145404395 - MLT1J LTR MaLR -189 323 242 1 616 3006 46 0 3 chr6 4114486 4114860 -145402177 + L1Md_F3 LINE L1 6198 6570 -14 1 616 198 0 0 0 chr6 4115339 4115361 -145401676 + (A)n Simple_repeat Simple_repeat 1 22 0 1 616 296 0 51 0 chr6 4115564 4115603 -145401434 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 616 237 33 0 0 chr6 4115834 4115864 -145401173 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1 616 180 77 0 0 chr6 4116810 4116836 -145400201 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 616 316 258 167 0 chr6 4116896 4117016 -145400021 - B1F SINE Alu -9 140 1 1 616 369 0 0 0 chr6 4117952 4117993 -145399044 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 616 300 336 22 90 chr6 4118164 4118298 -145398739 + LTR16A LTR ERVL 145 269 -182 1 616 6641 53 4 0 chr6 4118430 4119261 -145397776 - L1Md_F2 LINE L1 -1 6581 5748 1 616 180 378 24 12 chr6 4120371 4120454 -145396583 - MIR3 SINE MIR -19 189 106 1 616 451 279 86 125 chr6 4121087 4121299 -145395738 + B4 SINE B4 2 215 -77 1 616 315 0 0 0 chr6 4121299 4121334 -145395703 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 616 451 279 86 125 chr6 4121334 4121424 -145395613 + B4 SINE B4 216 292 0 1 616 420 20 0 0 chr6 4121446 4121495 -145395542 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 616 756 193 7 33 chr6 4122184 4122334 -145394703 - B1_Mur2 SINE Alu 0 149 4 1 616 925 271 0 0 chr6 4122468 4122656 -145394381 - B3 SINE B2 -26 190 3 1 616 22 0 0 0 chr6 4122835 4122857 -145394180 + AT_rich Low_complexity Low_complexity 1 22 0 1 616 1138 81 0 0 chr6 4122925 4123065 -145393972 + B1_Mus1 SINE Alu 1 140 -8 1 616 282 87 0 0 chr6 4123065 4123111 -145393926 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 1 616 364 165 11 23 chr6 4123119 4123206 -145393831 + GA-rich Low_complexity Low_complexity 2 87 0 1 616 489 307 119 32 chr6 4123387 4123730 -145393307 - L1ME2 LINE L1 -39 6125 5753 1 616 369 0 0 0 chr6 4124070 4124111 -145392926 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 616 3659 28 28 0 chr6 4124119 4124542 -145392495 + RLTR10C LTR ERVK 2 436 0 1 616 2532 90 53 3 chr6 4124542 4124922 -145392115 + MMERVK10C-int LTR ERVK 1 399 -7182 1 616 18694 45 0 3 chr6 4124920 4127270 -145389767 + MMERVK10C-int LTR ERVK 870 3212 -4369 1 616 13553 38 0 2 chr6 4127256 4128834 -145388203 + MMERVK10C-int LTR ERVK 4138 5715 -1866 1 616 1149 35 0 0 chr6 4128834 4128979 -145388058 + L1Md_A LINE L1 6438 6582 0 1 616 13553 38 0 2 chr6 4128979 4129077 -145387960 + MMERVK10C-int LTR ERVK 5716 5810 -1771 1 616 6987 48 5 52 chr6 4129063 4130045 -145386992 + MMERVK10C-int LTR ERVK 6646 7581 0 1 616 3581 31 28 14 chr6 4130045 4130475 -145386562 + RLTR10C LTR ERVK 1 436 0 1 616 324 0 0 0 chr6 4130477 4130513 -145386524 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 616 26 0 0 0 chr6 4130605 4130631 -145386406 + AT_rich Low_complexity Low_complexity 1 26 0 1 616 1230 111 0 10 chr6 4130654 4130846 -145386191 - L1_Mus2 LINE L1 -1 6565 6376 1 616 6860 44 9 0 chr6 4130849 4131732 -145385305 - L1Md_F2 LINE L1 0 6582 5692 1 616 2102 68 7 14 chr6 4131720 4132017 -145385020 - L1_Mus2 LINE L1 -180 6386 6092 1 616 360 0 0 0 chr6 4132086 4132126 -145384911 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 616 482 298 60 15 chr6 4132139 4132272 -145384765 - RSINE1 SINE B4 -18 147 9 1 616 227 303 62 14 chr6 4132488 4132632 -145384405 - Lx7 LINE L1 -1799 5897 5747 1 616 304 158 24 56 chr6 4132628 4132717 -145384320 + L1_Rod LINE L1 5634 5791 -500 1 616 318 26 0 0 chr6 4132802 4132841 -145384196 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 616 236 296 95 82 chr6 4133043 4133084 -145383953 - MER77 LTR ERVL -81 526 494 1 616 395 75 0 0 chr6 4133084 4133151 -145383886 + L1_Mus3 LINE L1 6571 6637 -1 1 616 236 296 95 82 chr6 4133151 4133256 -145383781 - MER77 LTR ERVL -114 493 378 1 616 469 250 70 31 chr6 4133253 4133381 -145383656 + B1_Mur1 SINE Alu 17 149 0 1 616 211 220 20 20 chr6 4133386 4133437 -145383600 + GA-rich Low_complexity Low_complexity 2 52 0 1 616 185 250 157 37 chr6 4135483 4135591 -145381446 - L2 LINE L2 -920 2499 2379 1 616 335 91 0 35 chr6 4135591 4135648 -145381389 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1 616 183 129 45 34 chr6 4135661 4135749 -145381288 + (TTATA)n Simple_repeat Simple_repeat 5 93 0 1 616 244 403 90 0 chr6 4136438 4136582 -145380455 - MER63A DNA AcHobo -35 175 19 1 616 285 192 14 0 chr6 4136722 4136795 -145380242 + Lx4A LINE L1 6983 7056 -2 1 616 477 0 0 0 chr6 4137180 4137233 -145379804 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 616 458 291 51 109 chr6 4137283 4137576 -145379461 - B4A SINE B4 -14 278 3 1 616 783 50 0 0 chr6 4137970 4138070 -145378967 + (GA)n Simple_repeat Simple_repeat 2 101 0 1 616 336 220 45 27 chr6 4140326 4140438 -145376599 + PB1D10 SINE Alu 2 115 -2 1 616 2844 98 64 4 chr6 4141101 4141551 -145375486 + RLTR44C LTR ERVK 1 477 -25 1 616 252 86 0 0 chr6 4141866 4141901 -145375136 + (A)n Simple_repeat Simple_repeat 1 35 0 2 616 2190 239 141 24 chr6 4144353 4145056 -145371981 - RCHARR1 DNA MER1_type -122 852 68 2 616 26 0 0 0 chr6 4145084 4145110 -145371927 + AT_rich Low_complexity Low_complexity 1 26 0 2 616 2121 75 31 0 chr6 4145637 4145930 -145371107 - L1_Mus3 LINE L1 -7 6631 6330 2 616 618 146 0 0 chr6 4146167 4146277 -145370760 + (CTATA)n Simple_repeat Simple_repeat 4 113 0 2 616 471 63 0 0 chr6 4146321 4146384 -145370653 + (CTATG)n Simple_repeat Simple_repeat 4 66 0 2 616 311 280 23 78 chr6 4146946 4147074 -145369963 + L2c LINE L2 3263 3383 -4 2 616 180 0 0 0 chr6 4148218 4148238 -145368799 + (T)n Simple_repeat Simple_repeat 1 20 0 2 616 202 136 95 19 chr6 4149655 4149760 -145367277 + (TTATA)n Simple_repeat Simple_repeat 1 113 0 2 616 218 148 81 16 chr6 4149682 4149744 -145367293 + (TTAA)n Simple_repeat Simple_repeat 4 69 0 2 616 22 0 0 0 chr6 4149844 4149866 -145367171 + AT_rich Low_complexity Low_complexity 1 22 0 2 616 27 0 0 0 chr6 4149894 4149921 -145367116 + AT_rich Low_complexity Low_complexity 1 27 0 2 616 410 408 25 9 chr6 4150035 4150357 -145366680 + L1M5 LINE L1 4757 5083 -1063 2 616 299 243 14 14 chr6 4152633 4152771 -145364266 + CT-rich Low_complexity Low_complexity 2 139 0 2 616 1673 231 74 31 chr6 4154540 4154960 -145362077 - Lx5 LINE L1 -1 7049 6612 2 616 1041 132 0 0 chr6 4154997 4155164 -145361873 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 2 616 236 115 19 0 chr6 4155709 4155761 -145361276 + Lx4B LINE L1 7002 7054 -4 2 616 4798 212 85 19 chr6 4156510 4157743 -145359294 + Lx9 LINE L1 6306 7620 -24 2 616 23 0 0 0 chr6 4157751 4157774 -145359263 + AT_rich Low_complexity Low_complexity 1 23 0 2 616 36 0 0 0 chr6 4158119 4158155 -145358882 + AT_rich Low_complexity Low_complexity 1 36 0 2 616 242 261 21 14 chr6 4160001 4160085 -145356952 + GA-rich Low_complexity Low_complexity 1 84 0 2 616 359 294 65 0 chr6 4161231 4161415 -145355622 - Lx8 LINE L1 -1548 5925 5730 2 616 562 304 99 79 chr6 4162294 4162637 -145354400 + ORR1E LTR MaLR 9 358 -1 2 616 194 194 0 0 chr6 4162697 4162733 -145354304 + L2a LINE L2 3375 3410 -16 2 616 260 262 24 24 chr6 4163337 4163419 -145353618 + ID4_ SINE ID 1 82 -1 2 616 1542 208 146 20 chr6 4163451 4163828 -145353209 + Lx9 LINE L1 7068 7511 -133 2 616 183 80 0 0 chr6 4163828 4163853 -145353184 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 616 654 13 0 0 chr6 4163853 4163927 -145353110 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 616 390 100 0 0 chr6 4163929 4163989 -145353048 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 616 1542 208 146 20 chr6 4163989 4164113 -145352924 + Lx9 LINE L1 7512 7636 -8 2 616 204 86 0 54 chr6 4165580 4165617 -145351420 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 616 345 47 0 0 chr6 4165708 4165751 -145351286 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 2 616 3339 51 40 0 chr6 4165754 4166183 -145350854 - L1Md_F3 LINE L1 -10 6574 6129 2 616 192 211 0 0 chr6 4166254 4166292 -145350745 - MER5A DNA MER1_type 0 189 152 2 616 2916 18 0 0 chr6 4166950 4167285 -145349752 - L1Md_T LINE L1 0 6582 6248 2 616 707 0 0 0 chr6 4167285 4167362 -145349675 + L1Md_T LINE L1 6179 6255 -327 2 616 274 340 57 83 chr6 4167557 4167714 -145349323 - Charlie4z DNA MER1_type -14 153 1 2 616 270 143 0 0 chr6 4167990 4168039 -145348998 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 616 283 74 18 36 chr6 4169604 4169660 -145347377 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2 616 285 100 0 0 chr6 4170390 4170440 -145346597 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 2 616 203 88 0 29 chr6 4170716 4170751 -145346286 + (TCC)n Simple_repeat Simple_repeat 2 35 0 2 616 2816 139 32 13 chr6 4170753 4171226 -145345811 - Lx4A LINE L1 -7 7051 6570 2 616 667 106 0 115 chr6 4171226 4171365 -145345672 + RLTRETN_Mm LTR ERVK 1 123 -199 2 616 9297 85 6 46 chr6 4171366 4172810 -145344227 - L1_Mur1 LINE L1 -1093 4793 3408 2 616 1705 71 4 0 chr6 4172797 4173023 -145344014 - L1_Mur1 LINE L1 -3477 2409 2183 2 616 294 326 0 11 chr6 4176276 4176369 -145340668 + PB1D10 SINE Alu 24 115 -2 2 616 205 88 0 29 chr6 4176606 4176641 -145340396 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 2 616 330 67 0 0 chr6 4176696 4176741 -145340296 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 616 2228 153 39 5 chr6 4177084 4177465 -145339572 - ORR1B1 LTR MaLR 0 394 1 2 616 381 332 108 5 chr6 4178180 4178383 -145338654 - L2a LINE L2 -4 3422 3199 2 616 525 334 145 30 chr6 4178373 4178848 -145338189 - L2a LINE L2 -361 3058 2529 2 616 1029 255 8 61 chr6 4179485 4179748 -145337289 + Lx5 LINE L1 6793 7041 -9 2 616 243 0 0 0 chr6 4179750 4179777 -145337260 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 616 442 282 79 5 chr6 4179916 4180105 -145336932 + L1MA6 LINE L1 5716 5918 -382 2 616 33124 80 6 3 chr6 4180149 4185364 -145331673 - L1Md_F2 LINE L1 -12 6570 1335 2 616 23424 162 31 31 chr6 4185989 4190687 -145326350 + Lx2B LINE L1 755 5451 -435 2 616 207 0 0 0 chr6 4190687 4190710 -145326327 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 616 23424 131 23 12 chr6 4190710 4191730 -145325307 + Lx2B LINE L1 5452 6482 -518 2 616 1597 183 35 6 chr6 4191730 4192043 -145324994 + Lx2B LINE L1 6677 6998 -2 2 616 1121 118 6 0 chr6 4192663 4192841 -145324196 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 616 929 146 6 0 chr6 4192841 4193006 -145324031 + GA-rich Low_complexity Low_complexity 3 168 0 2 616 324 111 0 0 chr6 4193087 4193141 -145323896 + (TTGTG)n Simple_repeat Simple_repeat 4 57 0 2 616 212 158 0 0 chr6 4193156 4193194 -145323843 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2 617 248 235 15 0 chr6 4196674 4196742 -145320295 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 617 186 167 0 0 chr6 4196747 4196783 -145320254 + (CATG)n Simple_repeat Simple_repeat 4 39 0 2 617 318 348 116 39 chr6 4197561 4197794 -145319243 + LTR16A LTR ERVL 108 358 -93 2 617 954 176 33 0 chr6 4197861 4198043 -145318994 + URR1A DNA MER1_type 38 225 -1 2 617 400 229 153 0 chr6 4198591 4198735 -145318302 - Lx9 LINE L1 -25 7619 7454 2 617 414 252 109 32 chr6 4198888 4199109 -145317928 + L1MA6 LINE L1 6012 6249 -51 2 617 342 0 0 0 chr6 4199133 4199171 -145317866 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 617 819 53 0 0 chr6 4199171 4199283 -145317754 + (GA)n Simple_repeat Simple_repeat 1 113 0 2 617 273 29 0 0 chr6 4200202 4200236 -145316801 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 2 617 241 26 26 26 chr6 4200275 4200314 -145316723 + (TTA)n Simple_repeat Simple_repeat 1 39 0 2 617 1431 229 63 3 chr6 4200316 4200631 -145316406 - Lx5 LINE L1 -5 7045 6712 2 617 207 0 0 0 chr6 4201440 4201463 -145315574 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 617 277 57 0 117 chr6 4201949 4202009 -145315028 + L1_Mus1 LINE L1 6515 6567 0 2 617 251 224 0 0 chr6 4202248 4202306 -145314731 + T-rich Low_complexity Low_complexity 2 59 0 2 617 1065 80 0 0 chr6 4202489 4202626 -145314411 - B1_Mus2 SINE Alu -9 138 2 2 617 981 272 72 45 chr6 4202644 4202867 -145314170 - Lx9 LINE L1 0 7644 7419 2 617 204 125 0 0 chr6 4202867 4202899 -145314138 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 617 981 272 72 45 chr6 4202899 4203144 -145313893 - Lx9 LINE L1 -226 7418 7163 2 617 315 49 0 0 chr6 4203149 4203190 -145313847 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 617 300 83 0 0 chr6 4203407 4203455 -145313582 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 617 806 244 52 0 chr6 4203480 4203673 -145313364 + Lx9 LINE L1 6372 6574 -1070 2 617 469 278 60 51 chr6 4203726 4203961 -145313076 - Lx8 LINE L1 -29 7444 7208 2 617 240 163 0 0 chr6 4204050 4204093 -145312944 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 617 249 312 3 7 chr6 4204781 4204876 -145312161 + MIR SINE MIR 89 189 -79 2 617 960 361 51 56 chr6 4204876 4205480 -145311557 - MLT1E2 LTR MaLR 0 627 27 2 617 37438 17 1 7 chr6 4205542 4210742 -145306295 + L1Md_A LINE L1 417 5582 -301 2 617 8765 16 0 0 chr6 4210743 4211739 -145305298 + L1Md_A LINE L1 5587 6582 0 2 617 23632 92 6 16 chr6 4213274 4217533 -145299504 + L1VL1 LINE L1 410 4628 -1255 2 617 2930 83 15 2 chr6 4217535 4217944 -145299093 + L1_Mus1 LINE L1 6153 6566 -1 2 617 432 353 109 26 chr6 4218279 4218809 -145298228 - L2 LINE L2 -938 2481 1908 2 617 1213 101 6 0 chr6 4219897 4220066 -145296971 + B2_Mm1a SINE B2 2 171 -22 2 617 352 83 67 0 chr6 4220103 4220163 -145296874 + B2_Mm1t SINE B2 128 191 -2 2 617 21 0 0 0 chr6 4220182 4220203 -145296834 + AT_rich Low_complexity Low_complexity 1 21 0 2 617 4928 160 21 22 chr6 4220790 4221673 -145295364 + L1_Mur2 LINE L1 4547 5430 -447 2 617 1368 99 16 0 chr6 4221673 4221864 -145295173 + B2_Mm2 SINE B2 1 194 -1 2 617 4928 160 21 22 chr6 4221864 4221921 -145295116 + L1_Mur2 LINE L1 5431 5486 -391 2 617 940 182 0 0 chr6 4221918 4222088 -145294949 + Lx2B LINE L1 6165 6334 -666 2 617 928 277 169 15 chr6 4224848 4225185 -145291852 - MTD LTR MaLR -18 401 13 2 617 250 308 169 44 chr6 4226909 4227045 -145289992 - MER5A DNA MER1_type -1 188 36 2 617 508 272 9 9 chr6 4227719 4227834 -145289203 + LTR16A LTR ERVL 337 451 0 2 617 228 159 0 43 chr6 4228097 4228143 -145288894 + CT-rich Low_complexity Low_complexity 3 46 0 2 617 234 359 0 0 chr6 4228858 4228950 -145288087 - Tigger13a DNA MER2_type -364 407 316 2 617 2188 224 38 2 chr6 4229347 4229456 -145287581 + MT2A LTR ERVL 1 111 -422 2 617 204 67 0 0 chr6 4229456 4229486 -145287551 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2 617 2188 227 52 6 chr6 4229486 4229858 -145287179 + MT2A LTR ERVL 112 601 0 2 617 278 67 22 0 chr6 4229903 4229948 -145287089 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 617 282 287 64 0 chr6 4230758 4230852 -145286185 - MLT1I LTR MaLR -3 408 309 2 617 450 248 121 21 chr6 4231101 4231241 -145285796 + B3A SINE B2 7 160 -38 3 617 456 19 0 0 chr6 4231244 4231297 -145285740 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 617 440 191 140 40 chr6 4231349 4231540 -145285497 - Lx4B LINE L1 -54 7004 6737 3 617 283 326 11 21 chr6 4231546 4231640 -145285397 - MTEb LTR MaLR -286 93 1 3 617 33823 36 0 0 chr6 4232293 4237534 -145279503 + L1Md_T LINE L1 252 5589 -297 3 617 8982 8 0 0 chr6 4237534 4238530 -145278507 + L1Md_T LINE L1 5590 6585 0 3 617 265 299 0 49 chr6 4238886 4238967 -145278070 + BC1_Mm scRNA scRNA 22 98 -54 3 617 193 390 12 35 chr6 4239535 4239620 -145277417 + L2b LINE L2 3284 3366 -9 3 617 252 0 0 0 chr6 4241030 4241058 -145275979 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 617 263 347 0 0 chr6 4242153 4242228 -145274809 - ID4 SINE ID -3 80 6 3 617 22 0 0 0 chr6 4242997 4243019 -145274018 + AT_rich Low_complexity Low_complexity 1 22 0 3 617 277 267 33 8 chr6 4243234 4243355 -145273682 + L1_Mur3 LINE L1 1469 1592 -4288 3 617 6757 74 2 8 chr6 4243351 4244395 -145272642 + L1_Mus1 LINE L1 5587 6580 -2 3 617 26 0 0 0 chr6 4244395 4244421 -145272616 + AT_rich Low_complexity Low_complexity 1 26 0 3 617 366 278 42 0 chr6 4244421 4244565 -145272472 + L1_Mur3 LINE L1 1584 1733 -4147 3 617 1189 281 89 67 chr6 4244583 4244823 -145272214 + L1_Mur3 LINE L1 2323 2575 -3305 3 617 1127 74 0 13 chr6 4244823 4244973 -145272064 + B1_Mus1 SINE Alu 1 148 0 3 617 1189 281 89 67 chr6 4244973 4245745 -145271292 + L1_Mur3 LINE L1 2576 3324 -2556 3 617 558 224 101 36 chr6 4245745 4245884 -145271153 + B1_Mur1 SINE Alu 1 148 -1 3 617 1189 281 89 67 chr6 4245884 4246177 -145270860 + L1_Mur3 LINE L1 3325 3658 -2222 3 617 416 123 14 0 chr6 4246179 4246252 -145270785 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 617 960 139 0 22 chr6 4246254 4246332 -145270705 + polypurine Low_complexity Low_complexity 1 78 0 3 617 1111 107 0 11 chr6 4246332 4246512 -145270525 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 617 960 139 0 22 chr6 4246512 4246617 -145270420 + polypurine Low_complexity Low_complexity 79 180 0 3 617 1058 108 8 19 chr6 4246618 4246882 -145270155 + (GAAA)n Simple_repeat Simple_repeat 1 260 0 3 617 1167 233 62 20 chr6 4246883 4247238 -145269799 + L1_Mur3 LINE L1 3651 4020 -1860 3 617 2366 302 105 3 chr6 4247257 4248187 -145268850 + Lx8 LINE L1 6182 7206 -267 3 617 207 164 16 32 chr6 4248253 4248276 -145268761 + T-rich Low_complexity Low_complexity 40 63 0 3 617 1165 69 0 0 chr6 4248276 4248421 -145268616 - B1_Mm SINE Alu -2 145 1 3 617 207 164 16 32 chr6 4248421 4248460 -145268577 + T-rich Low_complexity Low_complexity 3 39 0 3 617 340 289 76 20 chr6 4248527 4248611 -145268426 + Lx8 LINE L1 7263 7351 -122 3 617 386 65 16 0 chr6 4248611 4248673 -145268364 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 3 617 340 289 76 20 chr6 4248673 4248786 -145268251 + Lx8 LINE L1 7352 7470 -3 3 617 227 31 31 0 chr6 4248846 4248878 -145268159 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 617 278 279 19 19 chr6 4249214 4249320 -145267717 + CT-rich Low_complexity Low_complexity 5 110 0 3 617 24 32 0 0 chr6 4250712 4250743 -145266294 + AT_rich Low_complexity Low_complexity 1 31 0 3 617 261 0 0 0 chr6 4252081 4252110 -145264927 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 617 505 292 92 20 chr6 4252453 4252649 -145264388 - ID_B1 SINE B4 -14 210 1 3 617 494 261 155 4 chr6 4252651 4252909 -145264128 - L1MB8 LINE L1 -19 6159 5863 3 617 285 289 62 8 chr6 4253092 4253221 -145263816 - L1MB8 LINE L1 -503 5681 5546 3 617 772 167 5 9 chr6 4253494 4253719 -145263318 + T-rich Low_complexity Low_complexity 1 223 0 3 617 339 365 111 68 chr6 4254050 4254329 -145262708 + B4A SINE B4 1 291 -1 3 617 339 150 0 0 chr6 4254336 4254396 -145262641 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 3 617 414 0 0 0 chr6 4254541 4254587 -145262450 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 617 975 115 0 0 chr6 4255351 4255508 -145261529 + (TCC)n Simple_repeat Simple_repeat 3 159 0 3 617 25 0 0 0 chr6 4255747 4255772 -145261265 + AT_rich Low_complexity Low_complexity 1 25 0 3 617 3007 36 6 0 chr6 4255896 4256258 -145260779 - L1Md_F3 LINE L1 -13 6571 6208 3 617 633 212 35 18 chr6 4256297 4256475 -145260562 - RMER19B LTR ERVK -425 186 4 3 617 1987 71 272 3 chr6 4257391 4257715 -145259322 + RLTR9F LTR ERVK 1 411 -4 3 617 259 257 174 21 chr6 4258555 4258692 -145258345 + RLTR12B LTR ERVK 367 509 -18 3 617 1158 139 55 0 chr6 4258909 4259147 -145257890 - Lx5 LINE L1 -946 6104 5854 3 617 4227 195 60 11 chr6 4259139 4260026 -145257011 + Lx5 LINE L1 6120 7049 -1 3 617 18923 99 3 10 chr6 4260821 4264488 -145252549 - L1_Mus1 LINE L1 -1 6566 2926 3 617 292 252 6 147 chr6 4264507 4264684 -145252353 - Lx9 LINE L1 -594 7050 6899 3 617 686 197 47 0 chr6 4264739 4264866 -145252171 + ETnERV2-int LTR ERVK 7070 7202 -204 3 617 24 53 0 0 chr6 4265323 4265361 -145251676 + AT_rich Low_complexity Low_complexity 1 38 0 3 617 477 0 0 0 chr6 4265592 4265645 -145251392 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 617 470 174 12 0 chr6 4265705 4265791 -145251246 - Lx3C LINE L1 -8 6968 6882 3 617 319 246 115 0 chr6 4265811 4265941 -145251096 - L1M2 LINE L1 -2623 3520 3376 3 617 37561 12 11 16 chr6 4265948 4267598 -145249439 - L1Md_A LINE L1 0 6582 4927 3 617 234 200 47 62 chr6 4267598 4267662 -145249375 + RMER20A LTR ERVK 186 248 -268 3 617 37561 12 11 16 chr6 4267662 4272327 -145244710 - L1Md_A LINE L1 0 4926 244 3 617 288 281 50 7 chr6 4272299 4272479 -145244558 - L1M2 LINE L1 -4320 2529 2422 3 617 181 0 69 0 chr6 4272482 4272511 -145244526 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 3 617 663 266 24 60 chr6 4272581 4272749 -145244288 - RSINE1 SINE B4 -2 163 2 3 617 524 256 96 43 chr6 4272774 4272962 -145244075 - B3A SINE B2 0 198 1 3 617 3470 35 0 0 chr6 4272988 4273384 -145243653 + MTA_Mm LTR MaLR 1 396 0 3 617 573 309 73 35 chr6 4274014 4274354 -145242683 - MLT1B LTR MaLR -6 368 29 3 617 324 148 0 0 chr6 4274640 4274701 -145242336 + (CATA)n Simple_repeat Simple_repeat 2 62 0 3 617 3562 142 28 28 chr6 4274772 4275691 -145241346 - Lx5 LINE L1 -716 6334 5414 3 617 594 350 78 48 chr6 4275792 4276330 -145240707 - L1MD LINE L1 -3019 3127 2574 3 617 587 315 33 21 chr6 4276397 4276640 -145240397 - Lx8 LINE L1 -167 7306 7061 3 617 21 82 0 0 chr6 4276658 4276707 -145240330 + AT_rich Low_complexity Low_complexity 1 49 0 3 617 685 195 88 10 chr6 4276844 4277036 -145240001 - B3 SINE B2 -7 209 3 3 617 3086 84 19 0 chr6 4278704 4279120 -145237917 - L1_Mus1 LINE L1 0 6567 6144 3 617 1735 47 0 0 chr6 4279120 4279352 -145237685 + L1_Mm LINE L1 3183 3414 -2469 3 617 3292 10 0 0 chr6 4279354 4279744 -145237293 + L1Md_T LINE L1 5197 5586 -297 3 617 8379 31 8 0 chr6 4279744 4280732 -145236305 + L1Md_T LINE L1 5587 6582 0 3 617 10064 92 13 1 chr6 4280732 4282244 -145234793 + L1_Mm LINE L1 3406 4934 -949 3 617 22 0 0 0 chr6 4284031 4284053 -145232984 + AT_rich Low_complexity Low_complexity 1 22 0 3 617 23 54 0 0 chr6 4284201 4284238 -145232799 + AT_rich Low_complexity Low_complexity 1 37 0 3 617 231 114 0 0 chr6 4284646 4284681 -145232356 + (GGA)n Simple_repeat Simple_repeat 3 37 0 3 617 850 314 50 97 chr6 4285300 4285389 -145231648 - MT2A LTR ERVL -1 532 446 3 617 320 0 0 24 chr6 4285389 4285430 -145231607 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3 617 850 314 50 97 chr6 4285430 4285884 -145231153 - MT2A LTR ERVL -88 445 15 3 617 347 277 248 9 chr6 4286608 4286721 -145230316 + RSINE1 SINE B4 2 141 -24 3 617 708 340 12 39 chr6 4286795 4287052 -145229985 + B4A SINE B4 41 290 -2 3 617 200 86 29 0 chr6 4287308 4287343 -145229694 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 617 1134 64 0 0 chr6 4287527 4287668 -145229369 + B1_Mus1 SINE Alu 1 141 -7 3 617 243 0 0 0 chr6 4287676 4287703 -145229334 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 617 27 49 0 0 chr6 4287764 4287805 -145229232 + AT_rich Low_complexity Low_complexity 1 41 0 3 617 482 227 82 39 chr6 4288907 4289113 -145227924 + L1MA9 LINE L1 6089 6303 -9 3 617 23 0 0 0 chr6 4290776 4290799 -145226238 + AT_rich Low_complexity Low_complexity 1 23 0 3 617 479 301 108 16 chr6 4290865 4291115 -145225922 - Lx6 LINE L1 -1265 6195 5923 3 617 2757 300 82 27 chr6 4291583 4291610 -145225427 - Lx8 LINE L1 0 7473 7450 3 617 1842 122 37 0 chr6 4291610 4291905 -145225132 + Lx2 LINE L1 6691 6996 -1 3 617 2757 300 82 27 chr6 4291905 4293062 -145223975 - Lx8 LINE L1 -24 7449 6224 3 617 1281 75 14 39 chr6 4293089 4293296 -145223741 + L1_Mus3 LINE L1 6429 6630 -8 3 617 207 312 62 41 chr6 4293771 4293868 -145223169 - MIR SINE MIR 0 262 164 3 617 185 0 40 0 chr6 4296970 4296995 -145220042 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 617 435 360 135 38 chr6 4296996 4297530 -145219507 - L1MD LINE L1 -1907 4239 3654 3 617 243 278 44 0 chr6 4297537 4297627 -145219410 - L1M5 LINE L1 -2518 3628 3535 3 617 414 0 0 0 chr6 4297940 4297986 -145219051 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 617 333 0 0 0 chr6 4298895 4298932 -145218105 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 3 617 22 35 0 0 chr6 4299771 4299800 -145217237 + AT_rich Low_complexity Low_complexity 1 29 0 3 617 232 287 95 32 chr6 4300254 4300380 -145216657 + MER5A1 DNA MER1_type 33 166 0 3 617 552 186 0 0 chr6 4300689 4300807 -145216230 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 3 617 356 227 26 26 chr6 4301244 4301357 -145215680 - Lx5 LINE L1 -3 7047 6935 3 617 234 0 0 0 chr6 4301411 4301437 -145215600 + (T)n Simple_repeat Simple_repeat 1 26 0 3 617 767 185 218 12 chr6 4302624 4302794 -145214243 + B3 SINE B2 3 207 -9 3 617 246 174 0 0 chr6 4302944 4302990 -145214047 + (TTA)n Simple_repeat Simple_repeat 1 46 0 3 617 1678 139 41 0 chr6 4302990 4303257 -145213780 - Lx4A LINE L1 -3 7055 6778 3 617 459 303 37 114 chr6 4303832 4304078 -145212959 - MER67D LTR ERV1 -287 227 1 3 617 213 260 0 0 chr6 4305703 4305753 -145211284 + (CGTG)n Simple_repeat Simple_repeat 2 51 0 3 617 264 203 50 21 chr6 4305796 4305937 -145211100 + (TA)n Simple_repeat Simple_repeat 1 145 0 4 617 525 16 0 0 chr6 4306941 4307003 -145210034 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 617 517 206 0 22 chr6 4307818 4308002 -145209035 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 4 617 204 135 0 0 chr6 4308022 4308059 -145208978 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 4 617 217 303 128 0 chr6 4308291 4308413 -145208624 + MIR SINE MIR 23 161 -115 4 617 201 328 0 0 chr6 4308669 4308736 -145208301 + GA-rich Low_complexity Low_complexity 2 68 0 4 617 345 100 0 0 chr6 4308781 4308831 -145208206 + (A)n Simple_repeat Simple_repeat 1 50 0 4 617 26 64 0 0 chr6 4310293 4310340 -145206697 + AT_rich Low_complexity Low_complexity 1 47 0 4 617 610 292 44 0 chr6 4310488 4310625 -145206412 + RSINE1 SINE B4 13 155 -10 4 617 288 0 0 0 chr6 4310625 4310657 -145206380 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 617 488 307 110 0 chr6 4310716 4310843 -145206194 - RSINE1 SINE B4 -16 149 9 4 617 348 336 80 24 chr6 4312845 4312970 -145204067 + ID_B1 SINE B4 91 222 -2 4 617 2909 19 11 50 chr6 4313021 4313403 -145203634 + IAPLTR1_Mm LTR ERVK 1 367 0 4 617 7436 83 87 48 chr6 4313403 4314661 -145202376 + IAPEz-int LTR ERVK 8 1313 -5168 4 617 27442 22 1 2 chr6 4314659 4317935 -145199102 + IAPEz-int LTR ERVK 3209 6481 0 4 617 2909 19 11 50 chr6 4317935 4318317 -145198720 + IAPLTR1_Mm LTR ERVK 1 367 0 4 617 215 200 36 0 chr6 4318339 4318394 -145198643 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 4 617 243 0 0 0 chr6 4318626 4318653 -145198384 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 4 617 527 274 8 0 chr6 4318805 4318922 -145198115 - RSINE1 SINE B4 -45 120 3 4 617 363 221 0 0 chr6 4318933 4319019 -145198018 + (CAA)n Simple_repeat Simple_repeat 3 88 0 4 617 287 225 0 24 chr6 4320230 4320312 -145196725 + GA-rich Low_complexity Low_complexity 4 83 0 4 617 282 269 195 40 chr6 4320841 4321015 -145196022 - MIR3 SINE MIR -3 205 5 4 617 417 156 10 20 chr6 4321071 4321169 -145195868 + CT-rich Low_complexity Low_complexity 3 99 0 4 617 2625 268 49 33 chr6 4321823 4322698 -145194339 - Lx9 LINE L1 -354 7290 6402 4 617 328 328 114 34 chr6 4322699 4322996 -145194041 - L1M5 LINE L1 -1036 5110 4790 4 617 687 241 0 0 chr6 4323238 4323379 -145193658 + B1_Mur2 SINE Alu 2 142 -7 4 617 28 48 0 0 chr6 4323380 4323422 -145193615 + AT_rich Low_complexity Low_complexity 1 42 0 4 617 717 291 32 40 chr6 4323814 4324186 -145192851 - L1M5 LINE L1 -2087 4059 3691 4 617 423 0 0 0 chr6 4324801 4324848 -145192189 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 617 486 0 0 0 chr6 4324848 4324901 -145192136 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 618 192 77 0 0 chr6 4326059 4326085 -145190952 + (A)n Simple_repeat Simple_repeat 1 26 0 4 618 261 149 45 0 chr6 4327752 4327819 -145189218 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 618 342 250 23 35 chr6 4328007 4328094 -145188943 + PB1D10 SINE Alu 5 90 -27 4 618 23 0 0 0 chr6 4328210 4328233 -145188804 + AT_rich Low_complexity Low_complexity 1 23 0 4 618 22 56 0 0 chr6 4328309 4328345 -145188692 + AT_rich Low_complexity Low_complexity 1 36 0 4 618 389 318 103 56 chr6 4328388 4328679 -145188358 + LTR50 LTR ERVL 11 314 -217 4 618 837 120 0 0 chr6 4328863 4328996 -145188041 + (TTCC)n Simple_repeat Simple_repeat 4 136 0 4 618 406 259 65 92 chr6 4330590 4330743 -145186294 - RSINE1 SINE B4 -14 151 3 4 618 188 346 94 8 chr6 4331132 4331260 -145185777 - MIRm SINE MIR -64 212 74 4 618 726 286 114 9 chr6 4332877 4333096 -145183941 + 7SK RNA RNA 1 242 -89 4 618 308 281 255 36 chr6 4333426 4333618 -145183419 - ORR1E LTR MaLR -122 237 4 4 618 21 0 0 0 chr6 4334173 4334194 -145182843 + AT_rich Low_complexity Low_complexity 1 21 0 4 618 216 216 0 0 chr6 4334292 4334343 -145182694 + GA-rich Low_complexity Low_complexity 5 55 0 4 618 215 106 0 41 chr6 4334842 4334891 -145182146 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 618 302 330 85 0 chr6 4335027 4335133 -145181904 + MLT1A LTR MaLR 1 115 -259 4 618 233 360 40 10 chr6 4335129 4335230 -145181807 + MLT1A LTR MaLR 287 390 0 4 618 374 250 79 18 chr6 4336345 4336459 -145180578 + PB1 SINE Alu 1 121 -6 4 618 297 0 0 0 chr6 4336625 4336658 -145180379 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 618 574 176 8 8 chr6 4337045 4337137 -145179900 + polypyrimidine Low_complexity Low_complexity 41 132 0 4 618 1344 39 0 16 chr6 4337137 4337319 -145179718 + (TCC)n Simple_repeat Simple_repeat 2 180 0 4 618 574 176 8 8 chr6 4337319 4337358 -145179679 + polypyrimidine Low_complexity Low_complexity 2 40 0 4 618 433 330 149 16 chr6 4337358 4337546 -145179491 - ID_B1 SINE B4 -1 223 11 4 618 7030 91 2 20 chr6 4338030 4339609 -145177428 + L1Md_A LINE L1 407 2202 -3941 4 618 552 40 0 13 chr6 4339609 4339685 -145177352 + L1Md_F2 LINE L1 6508 6582 0 4 618 1147 116 0 0 chr6 4340632 4340778 -145176259 + B1_Mus1 SINE Alu 1 146 -2 4 618 879 102 0 0 chr6 4341282 4341410 -145175627 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 4 618 1080 24 0 0 chr6 4341412 4341539 -145175498 + (GGAAA)n Simple_repeat Simple_repeat 4 130 0 4 618 342 0 0 0 chr6 4341947 4341985 -145175052 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 618 240 214 0 0 chr6 4341998 4342054 -145174983 + GA-rich Low_complexity Low_complexity 2 57 0 4 618 553 301 6 50 chr6 4342068 4342229 -145174808 - B3A SINE B2 -30 168 15 4 618 1468 285 47 50 chr6 4343604 4344121 -145172916 + Lx6 LINE L1 6429 7323 -137 4 618 207 0 0 0 chr6 4344121 4344144 -145172893 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 618 1468 275 44 63 chr6 4344144 4344281 -145172756 + Lx6 LINE L1 7324 7460 0 4 618 247 278 86 9 chr6 4344481 4344597 -145172440 - BC1_Mm scRNA scRNA -24 128 4 4 618 2868 52 9 11 chr6 4345760 4346107 -145170930 - ORR1A0 LTR MaLR 0 346 1 4 618 330 26 0 0 chr6 4346158 4346197 -145170840 + (ATTG)n Simple_repeat Simple_repeat 4 42 0 4 618 554 288 110 63 chr6 4346672 4347086 -145169951 - L1MA7 LINE L1 -1553 5920 5458 4 618 21 0 0 0 chr6 4347682 4347703 -145169334 + AT_rich Low_complexity Low_complexity 1 21 0 4 618 393 331 13 16 chr6 4348380 4348514 -145168523 - B4A SINE B4 -153 139 4 4 618 233 345 33 16 chr6 4349615 4349736 -145167301 + MIRc SINE MIR 44 166 -102 4 618 461 335 83 2 chr6 4350072 4350283 -145166754 + B4A SINE B4 5 229 -63 4 618 559 190 207 78 chr6 4350305 4350522 -145166515 - Lx5 LINE L1 -50 7000 6756 4 618 1486 184 22 7 chr6 4350500 4350769 -145166268 + L1_Mur2 LINE L1 5320 5592 -285 4 618 570 288 12 38 chr6 4350825 4351039 -145165998 - B3A SINE B2 0 216 15 4 618 318 26 0 0 chr6 4351212 4351251 -145165786 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 618 269 64 0 41 chr6 4351252 4351301 -145165736 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 4 618 229 273 18 0 chr6 4351515 4351570 -145165467 + MER3 DNA MER1_type 47 102 -107 4 618 569 111 0 22 chr6 4353045 4353137 -145163900 - B2_Mm2 SINE B2 -105 90 1 4 618 1916 187 36 3 chr6 4353183 4353543 -145163494 + ORR1C1 LTR MaLR 7 378 0 4 618 234 283 27 36 chr6 4354097 4354207 -145162830 + L2a LINE L2 3234 3342 -84 4 618 1328 253 98 35 chr6 4354515 4354863 -145162174 - ORR1D1 LTR MaLR 0 374 5 4 618 617 69 0 11 chr6 4355897 4355985 -145161052 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 618 201 213 0 0 chr6 4356004 4356051 -145160986 + GA-rich Low_complexity Low_complexity 2 48 0 4 618 1089 131 0 0 chr6 4356051 4356227 -145160810 + (GAGAA)n Simple_repeat Simple_repeat 5 180 0 4 618 196 317 164 50 chr6 4356676 4356895 -145160142 + L2 LINE L2 2038 2281 -1138 4 618 760 234 50 2 chr6 4357052 4357262 -145159775 - L1MA8 LINE L1 -5 6295 6067 4 618 21 0 0 0 chr6 4358590 4358611 -145158426 + AT_rich Low_complexity Low_complexity 1 21 0 4 618 22 0 0 0 chr6 4360526 4360548 -145156489 + AT_rich Low_complexity Low_complexity 1 22 0 4 618 284 336 9 28 chr6 4360566 4360673 -145156364 + PB1D10 SINE Alu 6 110 -7 4 618 958 272 61 25 chr6 4361486 4361765 -145155272 + B4A SINE B4 2 290 -2 4 618 267 31 0 0 chr6 4361769 4361801 -145155236 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 618 441 0 0 0 chr6 4361801 4361849 -145155188 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 618 225 0 0 0 chr6 4362149 4362174 -145154863 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 618 416 233 28 28 chr6 4362589 4362695 -145154342 + B1F1 SINE Alu 39 144 -5 4 618 381 70 0 0 chr6 4363757 4363814 -145153223 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 4 618 1373 210 28 52 chr6 4364712 4365074 -145151963 - Lx7 LINE L1 0 7696 7344 4 618 234 200 0 0 chr6 4365126 4365166 -145151871 - Lx7 LINE L1 -352 7344 7305 4 618 216 97 0 0 chr6 4366462 4366493 -145150544 + (CATA)n Simple_repeat Simple_repeat 4 34 0 4 618 203 316 91 10 chr6 4366727 4366826 -145150211 + L2c LINE L2 3267 3373 -14 4 618 795 103 39 0 chr6 4367685 4367840 -145149197 + (TC)n Simple_repeat Simple_repeat 1 161 0 4 618 282 87 0 0 chr6 4367932 4367978 -145149059 + (A)n Simple_repeat Simple_repeat 1 46 0 4 618 201 138 0 0 chr6 4368787 4368816 -145148221 + (TTC)n Simple_repeat Simple_repeat 2 30 0 4 618 233 354 0 0 chr6 4372703 4372802 -145144235 + A-rich Low_complexity Low_complexity 1 99 0 4 618 215 170 21 0 chr6 4373024 4373071 -145143966 + GA-rich Low_complexity Low_complexity 2 49 0 4 618 307 329 0 0 chr6 4375155 4375225 -145141812 + ID4 SINE ID 1 70 -13 4 618 287 319 0 0 chr6 4375162 4375234 -145141803 + tRNA-Ala-GCY_ tRNA tRNA 2 73 -2 4 618 242 330 85 53 chr6 4376201 4376483 -145140554 + L2 LINE L2 1030 1320 -2099 4 618 226 313 12 12 chr6 4376754 4376838 -145140199 + B3 SINE B2 129 212 -4 4 618 352 331 98 60 chr6 4376862 4377381 -145139656 - L1MB5 LINE L1 -56 6118 5580 5 618 1161 82 0 14 chr6 4377382 4377530 -145139507 + B1_Mm SINE Alu 2 147 0 5 618 413 299 65 28 chr6 4377991 4378208 -145138829 + MLT1B LTR MaLR 37 274 -193 5 618 281 330 8 80 chr6 4378306 4378431 -145138606 - PB1D10 SINE Alu -1 116 1 5 618 28 29 0 0 chr6 4379751 4379786 -145137251 + AT_rich Low_complexity Low_complexity 1 35 0 5 618 24 32 0 0 chr6 4379978 4380009 -145137028 + AT_rich Low_complexity Low_complexity 1 31 0 5 618 767 266 42 119 chr6 4380267 4380579 -145136458 - B4 SINE B4 -1 291 4 5 618 420 20 0 0 chr6 4380770 4380819 -145136218 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 618 677 135 0 13 chr6 4381558 4381708 -145135329 + (TCTCCC)n Simple_repeat Simple_repeat 3 150 0 5 618 210 71 0 0 chr6 4382886 4382914 -145134123 + (TTG)n Simple_repeat Simple_repeat 3 30 0 5 618 318 314 86 0 chr6 4384963 4385068 -145131969 + PB1D10 SINE Alu 1 114 -3 5 618 475 264 8 46 chr6 4385721 4385852 -145131185 + RSINE1 SINE B4 4 130 -35 5 618 248 170 19 0 chr6 4386860 4386913 -145130124 + CT-rich Low_complexity Low_complexity 3 56 0 5 618 313 277 160 0 chr6 4386999 4387093 -145129944 + B1F1 SINE Alu 1 109 -40 5 618 663 128 84 7 chr6 4387270 4387412 -145129625 - Lx LINE L1 -1 6653 6501 5 618 22 56 0 0 chr6 4388217 4388253 -145128784 + AT_rich Low_complexity Low_complexity 1 36 0 5 618 252 0 0 0 chr6 4388907 4388935 -145128102 + (A)n Simple_repeat Simple_repeat 1 28 0 5 618 216 216 19 19 chr6 4389084 4389136 -145127901 - MIR3 SINE MIR -40 168 117 5 618 705 24 0 0 chr6 4389382 4389465 -145127572 + (ATGTG)n Simple_repeat Simple_repeat 2 84 0 5 618 250 267 67 0 chr6 4389629 4389719 -145127318 - L2a LINE L2 -271 3155 3060 5 618 232 362 61 6 chr6 4389731 4389895 -145127142 - L2a LINE L2 -413 3006 2834 5 618 210 176 0 0 chr6 4389991 4390042 -145126995 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 618 238 339 97 11 chr6 4390130 4390306 -145126731 - L2a LINE L2 -832 2587 2397 5 618 499 301 67 87 chr6 4392842 4393140 -145123897 + B4 SINE B4 1 292 0 5 618 217 297 0 15 chr6 4393142 4393207 -145123830 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 618 215 190 17 0 chr6 4394708 4394766 -145122271 + GA-rich Low_complexity Low_complexity 3 61 0 5 618 230 342 106 69 chr6 4395259 4395504 -145121533 + MLT1F2 LTR MaLR 67 320 -240 5 618 24 53 0 0 chr6 4396303 4396341 -145120696 + AT_rich Low_complexity Low_complexity 1 38 0 5 618 465 306 48 39 chr6 4398473 4398736 -145118301 - MLT1B LTR MaLR -3 387 108 5 618 257 283 0 32 chr6 4398683 4398745 -145118292 - ID4_ SINE ID -11 72 13 5 618 465 261 36 60 chr6 4398939 4399106 -145117931 + RSINE1 SINE B4 3 165 0 5 618 263 329 0 0 chr6 4399373 4399455 -145117582 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 618 832 80 175 8 chr6 4399927 4400053 -145116984 - B1_Mus1 SINE Alu 0 148 2 5 618 285 349 83 28 chr6 4400328 4400508 -145116529 + MIRb SINE MIR 38 227 -41 5 618 189 214 0 0 chr6 4402314 4402356 -145114681 + (CACG)n Simple_repeat Simple_repeat 2 43 0 5 618 575 177 6 18 chr6 4402366 4402533 -145114504 + (CATA)n Simple_repeat Simple_repeat 3 167 0 5 618 264 167 18 18 chr6 4402536 4402591 -145114446 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 618 492 414 58 25 chr6 4402670 4402997 -145114040 + LTR16B1 LTR ERVL 132 469 -11 5 618 489 49 37 0 chr6 4403384 4403465 -145113572 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 618 520 256 15 44 chr6 4403494 4403629 -145113408 - RSINE1 SINE B4 -25 140 10 5 618 201 74 0 0 chr6 4403654 4403681 -145113356 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 618 185 359 170 0 chr6 4404550 4404709 -145112328 + MIRm SINE MIR 91 276 0 5 618 225 0 0 0 chr6 4406955 4406980 -145110057 + (TCTCC)n Simple_repeat Simple_repeat 4 28 0 5 618 579 128 12 0 chr6 4408373 4408459 -145108578 + BC1_Mm scRNA scRNA 1 87 -65 5 618 805 100 122 8 chr6 4408560 4408691 -145108346 - B1_Mm SINE Alu 0 147 2 5 618 24 53 0 0 chr6 4409180 4409218 -145107819 + AT_rich Low_complexity Low_complexity 1 38 0 5 618 261 122 119 24 chr6 4409575 4409659 -145107378 + (TTTAA)n Simple_repeat Simple_repeat 5 96 0 5 618 2767 55 0 14 chr6 4410168 4410537 -145106500 - L1_Mus1 LINE L1 -213 6354 5991 5 618 1188 78 84 0 chr6 4410537 4410703 -145106334 + L1_Mus1 LINE L1 6388 6567 0 5 618 474 18 0 0 chr6 4410703 4410758 -145106279 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 618 522 0 0 0 chr6 4410758 4410816 -145106221 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 5 618 250 258 109 33 chr6 4411571 4411613 -145105424 + PB1D10 SINE Alu 12 54 -63 5 618 1368 94 16 5 chr6 4411613 4411806 -145105231 + B2_Mm2 SINE B2 1 195 0 5 618 250 258 109 33 chr6 4411806 4411855 -145105182 + PB1D10 SINE Alu 55 110 -7 5 618 255 164 0 0 chr6 4411857 4411918 -145105119 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 618 392 265 67 87 chr6 4412292 4412441 -145104596 + RSINE1 SINE B4 3 148 -17 5 618 276 299 80 110 chr6 4412620 4412857 -145104180 + MIRc SINE MIR 19 248 -20 5 618 21 0 0 0 chr6 4413194 4413215 -145103822 + AT_rich Low_complexity Low_complexity 1 21 0 5 618 362 284 0 18 chr6 4413511 4413622 -145103415 - Lx8 LINE L1 -115 7358 7250 5 618 360 324 9 0 chr6 4414011 4414116 -145102921 + PB1D10 SINE Alu 6 111 -6 5 618 450 0 0 0 chr6 4414944 4414994 -145102043 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 618 342 301 40 27 chr6 4416578 4416728 -145100309 - MIR SINE MIR 0 262 111 5 618 241 302 81 0 chr6 4417076 4417162 -145099875 - L2 LINE L2 -1328 2091 1999 5 618 311 250 0 81 chr6 4417464 4417551 -145099486 + MLT1H2 LTR MaLR 52 131 -358 5 618 300 28 0 0 chr6 4417848 4417884 -145099153 + U2 snRNA snRNA 1 36 -152 5 618 190 178 27 27 chr6 4418707 4418782 -145098255 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 5 618 281 328 204 19 chr6 4420481 4420892 -145096145 - L2 LINE L2 -928 2491 2005 5 618 429 20 0 0 chr6 4421165 4421215 -145095822 + (TTA)n Simple_repeat Simple_repeat 1 50 0 5 618 25 31 0 0 chr6 4421750 4421782 -145095255 + AT_rich Low_complexity Low_complexity 1 32 0 5 618 3626 42 0 26 chr6 4422502 4422966 -145094071 + L1Md_F3 LINE L1 6133 6584 0 5 618 30033 117 25 15 chr6 4422980 4425781 -145091256 + L1Md_F2 LINE L1 66 2866 -3017 5 618 915 10 0 0 chr6 4425781 4425885 -145091152 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 5 618 30033 79 9 2 chr6 4425885 4428570 -145088467 + L1Md_F2 LINE L1 2867 5585 -298 5 618 7753 61 0 17 chr6 4428570 4429583 -145087454 + L1Md_F2 LINE L1 5587 6582 0 5 618 733 309 129 83 chr6 4429885 4430042 -145086995 + MTEa LTR MaLR 13 180 -199 5 618 644 285 42 33 chr6 4430042 4430256 -145086781 + B3 SINE B2 1 216 0 5 618 733 309 129 83 chr6 4430256 4430447 -145086590 + MTEa LTR MaLR 181 377 -2 5 618 235 286 48 0 chr6 4430520 4430583 -145086454 + ID4_ SINE ID 4 69 -14 5 618 310 316 61 17 chr6 4430824 4430983 -145086054 + LTR40a LTR ERVL 267 496 -23 5 618 477 289 189 13 chr6 4431217 4431455 -145085582 - B4A SINE B4 -12 280 1 5 618 1423 261 109 31 chr6 4432151 4432551 -145084486 + RLTR20B1 LTR ERVK 49 471 -92 5 618 405 0 0 0 chr6 4432551 4432596 -145084441 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 618 1423 261 109 31 chr6 4432596 4432673 -145084364 + RLTR20B1 LTR ERVK 472 563 0 5 618 435 278 38 38 chr6 4433069 4433200 -145083837 + B1F1 SINE Alu 12 142 -7 5 618 303 52 52 0 chr6 4435570 4435628 -145081409 + (TAAAAA)n Simple_repeat Simple_repeat 2 62 0 5 618 298 276 51 0 chr6 4436006 4436104 -145080933 - MamRep434 DNA TcMar -30 396 294 5 618 265 348 0 0 chr6 4436241 4436330 -145080707 - L2b LINE L2 0 3375 3287 5 618 233 170 75 0 chr6 4436423 4436476 -145080561 - MamRep434 DNA TcMar -369 57 1 5 618 229 206 14 29 chr6 4436684 4436754 -145080283 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 618 534 308 65 91 chr6 4437220 4437559 -145079478 + MLT1B LTR MaLR 61 390 0 5 618 207 254 55 0 chr6 4437646 4437701 -145079336 - MER5A DNA MER1_type -25 164 107 5 618 309 325 0 24 chr6 4438839 4438962 -145078075 + GA-rich Low_complexity Low_complexity 3 122 0 5 618 346 172 34 25 chr6 4440295 4440414 -145076623 + GA-rich Low_complexity Low_complexity 1 120 0 5 618 805 263 54 0 chr6 4440685 4440856 -145076181 + B3 SINE B2 1 181 -35 5 618 201 74 0 0 chr6 4440856 4440883 -145076154 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 5 618 805 263 54 0 chr6 4440883 4440916 -145076121 + B3 SINE B2 182 215 -1 5 618 312 91 0 0 chr6 4441024 4441068 -145075969 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 618 259 319 87 0 chr6 4441129 4441198 -145075839 + ID4 SINE ID 6 80 -3 5 618 617 38 0 12 chr6 4441200 4441281 -145075756 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 5 618 228 337 112 0 chr6 4441281 4441307 -145075730 + ID_B1 SINE B4 87 113 -111 5 618 511 175 64 40 chr6 4442230 4442265 -145074772 + MT2B LTR ERVL 127 164 -437 5 618 675 218 74 15 chr6 4442265 4442400 -145074637 + B1_Mus1 SINE Alu 1 143 -5 5 618 476 330 123 31 chr6 4442548 4442945 -145074092 + MLT1H1 LTR MaLR 155 594 -1 5 618 187 250 29 59 chr6 4443214 4443282 -145073755 + MIRc SINE MIR 173 238 -30 5 618 895 314 92 10 chr6 4444167 4444582 -145072455 - L1MB5 LINE L1 -31 6143 5695 5 618 573 304 143 91 chr6 4444916 4445248 -145071789 + MTD LTR MaLR 1 348 -31 5 618 234 0 0 0 chr6 4445264 4445290 -145071747 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 618 644 260 22 43 chr6 4445795 4445980 -145071057 - MER20 DNA MER1_type -38 181 1 5 618 434 161 0 11 chr6 4446980 4447074 -145069963 + (TG)n Simple_repeat Simple_repeat 2 94 0 5 618 866 266 85 15 chr6 4448057 4448317 -145068720 - B4 SINE B4 -14 278 1 5 618 23 86 0 0 chr6 4448526 4448584 -145068453 + AT_rich Low_complexity Low_complexity 1 58 0 6 618 562 316 34 11 chr6 4448786 4448965 -145068072 - MER5A DNA MER1_type 0 189 7 6 618 281 322 101 33 chr6 4451332 4451698 -145065339 + L2 LINE L2 2461 2851 -568 6 618 540 266 0 0 chr6 4451912 4452021 -145065016 - PB1D10 SINE Alu -2 115 7 6 618 268 241 69 143 chr6 4451932 4452121 -145064916 - MT2B LTR ERVL -350 251 77 6 618 510 31 0 0 chr6 4452764 4452828 -145064209 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 618 255 31 0 0 chr6 4452828 4452859 -145064178 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 618 234 238 23 23 chr6 4452867 4452953 -145064084 + (CAGAGA)n Simple_repeat Simple_repeat 5 90 0 6 618 236 54 54 0 chr6 4452955 4452992 -145064045 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 618 290 247 18 6 chr6 4452992 4453155 -145063882 + GA-rich Low_complexity Low_complexity 2 166 0 6 618 188 61 61 0 chr6 4453172 4453205 -145063832 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 6 618 435 38 0 0 chr6 4453852 4453905 -145063132 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 6 618 460 193 127 14 chr6 4454020 4454162 -145062875 + Lx4A LINE L1 6899 7056 -2 6 618 21 0 0 0 chr6 4454162 4454183 -145062854 + AT_rich Low_complexity Low_complexity 1 21 0 6 618 264 169 39 13 chr6 4454968 4455013 -145062024 + polypurine Low_complexity Low_complexity 1 46 0 6 618 648 38 0 0 chr6 4455013 4455092 -145061945 + (GGGA)n Simple_repeat Simple_repeat 2 80 0 6 618 264 169 39 13 chr6 4455092 4455124 -145061913 + polypurine Low_complexity Low_complexity 47 80 0 6 619 196 290 198 36 chr6 4456722 4456833 -145060204 + MIR3 SINE MIR 33 161 -47 6 619 29 47 0 0 chr6 4459230 4459273 -145057764 + AT_rich Low_complexity Low_complexity 1 43 0 6 619 213 81 10 155 chr6 4461906 4462009 -145055028 + T-rich Low_complexity Low_complexity 1 88 0 6 619 1213 68 0 0 chr6 4462012 4462159 -145054878 - B1_Mus2 SINE Alu 0 147 1 6 619 312 27 0 0 chr6 4462255 4462292 -145054745 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 6 619 669 13 0 0 chr6 4464531 4464609 -145052428 + (GAA)n Simple_repeat Simple_repeat 1 78 0 6 619 192 77 0 0 chr6 4465020 4465046 -145051991 + (GAA)n Simple_repeat Simple_repeat 2 27 0 6 619 536 42 14 0 chr6 4465388 4465459 -145051578 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 6 619 28 0 0 0 chr6 4467651 4467679 -145049358 + AT_rich Low_complexity Low_complexity 1 28 0 6 619 216 356 0 52 chr6 4467868 4467945 -145049092 + ID2 SINE ID 2 74 -9 6 619 288 0 0 0 chr6 4468406 4468438 -145048599 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 619 351 0 0 0 chr6 4472221 4472260 -145044777 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 619 396 0 0 0 chr6 4473067 4473111 -145043926 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 619 240 284 0 0 chr6 4474618 4474699 -145042338 + (CCA)n Simple_repeat Simple_repeat 3 83 0 6 619 402 21 0 0 chr6 4476575 4476622 -145040415 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 619 615 252 0 45 chr6 4479914 4480047 -145036990 - RSINE1 SINE B4 -36 129 3 6 619 198 0 0 0 chr6 4480372 4480394 -145036643 + (A)n Simple_repeat Simple_repeat 1 22 0 6 619 261 0 0 0 chr6 4481453 4481482 -145035555 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 619 1054 118 0 0 chr6 4481488 4481624 -145035413 - B1_Mus2 SINE Alu -7 140 5 6 619 245 309 15 0 chr6 4488242 4488310 -145028727 - ID4 SINE ID -13 70 2 6 619 213 291 151 0 chr6 4488322 4488408 -145028629 - B1F1 SINE Alu -5 144 46 6 619 213 39 0 0 chr6 4488549 4488575 -145028462 + (TTA)n Simple_repeat Simple_repeat 3 28 0 6 619 264 179 54 0 chr6 4490163 4490275 -145026762 + (CA)n Simple_repeat Simple_repeat 2 119 0 6 619 21 36 0 0 chr6 4490962 4490990 -145026047 + AT_rich Low_complexity Low_complexity 1 28 0 6 619 401 0 0 20 chr6 4491635 4491685 -145025352 + (TAA)n Simple_repeat Simple_repeat 1 49 0 6 619 1211 171 66 5 chr6 4494075 4494287 -145022750 - URR1B DNA MER1_type 0 225 1 6 619 1237 55 7 0 chr6 4494384 4494530 -145022507 + B1_Mus2 SINE Alu 1 147 0 6 619 216 0 0 0 chr6 4495498 4495522 -145021515 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 619 963 147 0 0 chr6 4497443 4497606 -145019431 + (GGAGAA)n Simple_repeat Simple_repeat 6 168 0 6 619 219 69 0 0 chr6 4498047 4498076 -145018961 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 619 201 258 172 61 chr6 4498102 4498201 -145018836 - MER5B DNA MER1_type -48 130 21 6 619 304 335 46 41 chr6 4498793 4498989 -145018048 + LTR82B Low_complexity ERVL 126 322 -508 6 619 722 243 32 47 chr6 4499804 4499994 -145017043 + LTR40a LTR ERVL 20 206 -313 6 619 642 282 62 26 chr6 4500001 4500287 -145016750 + LTR40a LTR ERVL 167 519 0 1 619 360 266 27 9 chr6 4501378 4501488 -145015549 + PB1D10 SINE Alu 1 112 -5 2 619 250 250 20 40 chr6 4501491 4501591 -145015446 + GA-rich Low_complexity Low_complexity 2 99 0 3 619 22 0 0 0 chr6 4501642 4501664 -145015373 + AT_rich Low_complexity Low_complexity 1 22 0 4 619 276 30 0 0 chr6 4502151 4502184 -145014853 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 619 594 39 0 0 chr6 4502256 4502333 -145014704 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 619 342 206 52 12 chr6 4502950 4503122 -145013915 + (TA)n Simple_repeat Simple_repeat 2 180 0 7 619 369 0 0 0 chr6 4506602 4506643 -145010394 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 619 360 0 0 0 chr6 4506954 4506994 -145010043 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 619 387 0 0 0 chr6 4508232 4508275 -145008762 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 619 342 213 34 85 chr6 4508278 4508396 -145008641 + Lx9 LINE L1 7513 7624 -20 1 619 189 107 0 0 chr6 4508396 4508424 -145008613 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 619 193 29 29 29 chr6 4509232 4509267 -145007770 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 619 413 206 18 126 chr6 4509655 4509766 -145007271 + MT2B LTR ERVL 166 264 -337 1 619 689 155 78 0 chr6 4509676 4509792 -145007245 + B1_Mur1 SINE Alu 18 142 -7 1 619 696 24 0 0 chr6 4509792 4509874 -145007163 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 619 502 363 16 35 chr6 4510108 4510365 -145006672 - MIR SINE MIR -2 260 9 1 619 354 98 0 0 chr6 4512243 4512294 -145004743 + (T)n Simple_repeat Simple_repeat 1 51 0 1 619 254 354 115 10 chr6 4512956 4513164 -145003873 + Kanga11a DNA Tc2 108 337 -633 1 619 1739 36 0 0 chr6 4514416 4514608 -145002429 - B2_Mm1a SINE B2 0 193 2 2 619 370 314 214 20 chr6 4514849 4515303 -145001734 + L1MC4 LINE L1 6483 7005 -877 2 619 254 365 0 55 chr6 4515459 4515569 -145001468 + RMER12 LTR ERVK 734 837 -485 2 619 333 0 0 0 chr6 4515626 4515663 -145001374 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 619 405 337 30 0 chr6 4516360 4516535 -145000502 + GA-rich Low_complexity Low_complexity 1 180 0 2 619 870 278 19 0 chr6 4516535 4516751 -145000286 + ID_B1 SINE B4 3 222 -2 2 619 274 353 16 60 chr6 4516751 4516788 -145000249 + polypurine Low_complexity Low_complexity 144 179 0 2 619 1044 86 14 21 chr6 4517103 4517245 -144999792 - B1_Mur4 SINE Alu -7 143 3 2 619 495 0 0 0 chr6 4517707 4517762 -144999275 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 619 223 250 82 16 chr6 4518570 4518631 -144998406 + ID4 SINE ID 3 67 -16 2 619 1626 290 79 13 chr6 4519201 4519743 -144997294 - Lx5 LINE L1 -18 7032 6455 3 619 496 239 70 35 chr6 4519738 4519881 -144997156 + Lx6 LINE L1 6644 6791 -669 3 619 1490 144 0 9 chr6 4520394 4520618 -144996419 - URR1A DNA MER1_type -4 222 1 3 619 263 305 59 35 chr6 4521790 4521875 -144995162 - ORR1E LTR MaLR -78 281 195 3 619 333 250 0 166 chr6 4521866 4522053 -144994984 + ID_B1 SINE B4 65 220 -4 3 619 520 240 0 136 chr6 4521890 4522059 -144994978 + B1_Mur1 SINE Alu 4 149 0 3 619 746 197 0 0 chr6 4523005 4523132 -144993905 + B1_Mur1 SINE Alu 12 138 -11 3 619 520 325 96 28 chr6 4523194 4523444 -144993593 - B4A SINE B4 0 292 26 3 619 209 171 0 0 chr6 4523537 4523572 -144993465 + (TTG)n Simple_repeat Simple_repeat 1 35 0 3 619 795 307 38 5 chr6 4523572 4523785 -144993252 - ID_B1 SINE B4 -1 223 4 3 619 504 0 0 0 chr6 4523805 4523861 -144993176 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 619 359 211 0 106 chr6 4524067 4524152 -144992885 - B1_Mur4 SINE Alu -52 98 23 4 619 228 273 100 22 chr6 4524616 4524706 -144992331 + L1MEf LINE L1 478 574 -5626 4 619 1869 155 9 22 chr6 4525094 4525417 -144991620 + ORR1A4 LTR MaLR 3 321 -8 4 619 406 285 156 120 chr6 4525535 4525810 -144991227 + B4A SINE B4 2 286 -6 4 619 320 304 0 0 chr6 4525952 4526031 -144991006 + PB1D10 SINE Alu 20 98 -19 4 619 630 314 54 54 chr6 4526081 4526560 -144990477 + L1MEf LINE L1 995 1473 -4727 4 619 924 155 0 0 chr6 4526576 4526737 -144990300 + GA-rich Low_complexity Low_complexity 1 161 0 4 619 442 259 74 13 chr6 4526788 4526937 -144990100 + L1MEf LINE L1 1555 1712 -4488 4 619 241 297 0 51 chr6 4526994 4527072 -144989965 + B1F SINE Alu 43 116 -33 4 619 674 24 12 0 chr6 4527355 4527439 -144989598 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 4 619 229 346 37 30 chr6 4528173 4528307 -144988730 - MIR SINE MIR -126 136 2 4 619 399 68 0 0 chr6 4528697 4528756 -144988281 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 5 619 585 153 0 0 chr6 4530988 4531112 -144985925 + (ATG)n Simple_repeat Simple_repeat 3 126 0 5 619 610 352 75 66 chr6 4531580 4531991 -144985046 + MamRep605 Unknown Unknown 446 860 -16 5 619 897 138 27 14 chr6 4533069 4533216 -144983821 + B1_Mur4 SINE Alu 1 149 -1 5 619 1100 67 7 0 chr6 4533275 4533425 -144983612 + (TCTCCC)n Simple_repeat Simple_repeat 1 151 0 5 619 994 99 8 0 chr6 4536393 4536642 -144980395 + (TC)n Simple_repeat Simple_repeat 1 251 0 5 619 200 324 0 13 chr6 4537017 4537092 -144979945 + CT-rich Low_complexity Low_complexity 3 76 0 5 619 222 227 16 32 chr6 4537130 4537253 -144979784 + (TTA)n Simple_repeat Simple_repeat 1 121 0 5 619 22 0 0 0 chr6 4537258 4537280 -144979757 + AT_rich Low_complexity Low_complexity 1 22 0 5 619 324 300 175 62 chr6 4538068 4538388 -144978649 + LTR37A LTR ERV1 4 359 -67 5 619 270 290 0 0 chr6 4538440 4538502 -144978535 - tRNA-Ala-GCA tRNA tRNA -13 62 1 6 619 1018 140 251 0 chr6 4539383 4539554 -144977483 + B3 SINE B2 3 216 0 6 619 348 309 134 68 chr6 4540024 4540316 -144976721 - Lx8 LINE L1 -6 7467 7157 6 619 245 278 35 113 chr6 4540840 4540982 -144976055 - LTR48B LTR ERV1 -75 569 439 6 619 545 330 15 46 chr6 4541380 4541577 -144975460 + B3A SINE B2 2 192 -6 6 619 242 280 88 20 chr6 4541653 4541755 -144975282 + PB1D7 SINE Alu 3 111 -9 6 619 211 72 23 23 chr6 4542450 4542493 -144974544 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 619 521 318 30 0 chr6 4542843 4542975 -144974062 + RSINE1 SINE B4 6 141 -24 6 619 294 95 0 0 chr6 4542975 4543017 -144974020 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 619 21 36 0 0 chr6 4543027 4543055 -144973982 + AT_rich Low_complexity Low_complexity 1 28 0 6 619 297 75 0 0 chr6 4543628 4543668 -144973369 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 619 266 83 62 0 chr6 4543771 4543819 -144973218 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 7 619 505 316 92 15 chr6 4544031 4544227 -144972810 - MIRb SINE MIR -57 211 1 7 619 807 296 8 59 chr6 4545632 4545869 -144971168 + B4 SINE B4 64 288 -4 7 619 337 278 61 38 chr6 4545887 4546018 -144971019 - LTR37A LTR ERV1 -229 197 64 7 619 621 0 0 0 chr6 4546381 4546450 -144970587 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 619 459 320 181 24 chr6 4546544 4546842 -144970195 - ORR1E LTR MaLR -7 352 8 7 619 346 215 148 63 chr6 4547379 4547568 -144969469 - Charlie7 DNA MER1_type -1870 742 538 7 619 724 230 103 6 chr6 4547633 4547808 -144969229 - B3A SINE B2 -6 192 1 7 619 253 283 50 20 chr6 4547887 4547988 -144969049 + PB1D10 SINE Alu 1 104 -13 7 619 297 0 0 0 chr6 4548663 4548696 -144968341 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 619 875 137 23 0 chr6 4548942 4549117 -144967920 + GA-rich Low_complexity Low_complexity 2 180 0 8 619 292 229 16 0 chr6 4549117 4549178 -144967859 + G-rich Low_complexity Low_complexity 4 65 0 8 619 394 267 10 0 chr6 4549537 4549638 -144967399 + Charlie19a DNA Charlie 126 227 -159 8 619 68 82 0 0 chr6 4551305 4551464 -144965573 + GC_rich Low_complexity Low_complexity 1 159 0 8 619 24 0 0 0 chr6 4551517 4551541 -144965496 + GC_rich Low_complexity Low_complexity 1 24 0 8 619 225 0 0 0 chr6 4553215 4553240 -144963797 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 619 265 220 141 11 chr6 4553310 4553402 -144963635 - MIR SINE MIR -17 245 142 8 619 359 237 59 34 chr6 4553403 4553521 -144963516 + MER104 DNA Tc2 36 156 -25 8 619 391 269 90 27 chr6 4553530 4553641 -144963396 - MIRb SINE MIR -111 157 40 8 619 363 23 0 0 chr6 4553947 4553991 -144963046 + (TC)n Simple_repeat Simple_repeat 2 45 0 9 619 414 0 0 0 chr6 4554108 4554154 -144962883 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 619 182 267 119 109 chr6 4556925 4557026 -144960011 - L4 LINE RTE -839 1190 1089 9 619 1590 217 226 21 chr6 4557222 4557745 -144959292 + Lx6 LINE L1 6816 7445 -15 9 619 23 0 0 0 chr6 4558543 4558566 -144958471 + AT_rich Low_complexity Low_complexity 1 23 0 9 619 33 0 0 0 chr6 4558597 4558630 -144958407 + AT_rich Low_complexity Low_complexity 1 33 0 9 619 1085 10 71 11 chr6 4558778 4559682 -144957355 + (CCCCAG)n Simple_repeat Simple_repeat 1 958 0 9 619 185 139 23 0 chr6 4561456 4561499 -144955538 + (TA)n Simple_repeat Simple_repeat 1 44 0 9 619 243 295 84 15 chr6 4562127 4562258 -144954779 + L1M5 LINE L1 3988 4127 -2019 9 619 426 359 156 15 chr6 4562512 4562847 -144954190 + L1M5 LINE L1 4446 4830 -1316 9 619 471 18 0 0 chr6 4562847 4562903 -144954134 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 619 426 359 156 15 chr6 4562903 4563177 -144953860 + L1M5 LINE L1 4831 5140 -1006 9 619 24 32 0 0 chr6 4563442 4563473 -144953564 + AT_rich Low_complexity Low_complexity 1 31 0 1 619 254 209 45 0 chr6 4563568 4563635 -144953402 + Lx6 LINE L1 7361 7430 -30 1 619 21 36 0 0 chr6 4563950 4563978 -144953059 + AT_rich Low_complexity Low_complexity 1 28 0 1 619 293 224 0 0 chr6 4564966 4565024 -144952013 + ID4 SINE ID 4 61 -22 1 619 183 204 0 0 chr6 4565091 4565135 -144951902 + (ATTG)n Simple_repeat Simple_repeat 2 45 0 1 619 9279 77 98 1 chr6 4565171 4566667 -144950370 - MusHAL1 LINE L1 -2 2710 1070 1 619 226 354 25 33 chr6 4566999 4567119 -144949918 - MamRep1161 DNA TcMar -764 193 75 1 619 327 25 0 0 chr6 4569025 4569065 -144947972 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 619 208 100 50 0 chr6 4570557 4570597 -144946440 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 619 266 125 0 20 chr6 4571912 4571961 -144945076 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1 619 1495 264 120 50 chr6 4571962 4572730 -144944307 - Lx9 LINE L1 -146 7498 6677 1 619 203 88 0 29 chr6 4572801 4572836 -144944201 + (GGGGA)n Simple_repeat Simple_repeat 3 36 0 1 619 21 57 0 0 chr6 4575916 4575951 -144941086 + AT_rich Low_complexity Low_complexity 1 35 0 1 619 637 250 33 33 chr6 4575960 4576142 -144940895 - B3A SINE B2 -15 183 2 1 619 8043 94 2 1 chr6 4577673 4578852 -144938185 - L1_Mm LINE L1 -291 5592 4413 1 619 211 254 36 0 chr6 4578900 4578955 -144938082 - ID4_ SINE ID -25 58 2 1 619 461 273 83 0 chr6 4578955 4579087 -144937950 - B1F SINE Alu -2 147 5 1 619 215 232 70 18 chr6 4579036 4579093 -144937944 - B4A SINE B4 -148 144 85 1 619 303 340 62 99 chr6 4579251 4579493 -144937544 + Kanga2_a DNA Tc2 22 254 -634 1 619 182 279 247 20 chr6 4580395 4580545 -144936492 - MIRb SINE MIR -16 252 69 1 619 182 196 154 19 chr6 4581849 4581901 -144935136 - L2a LINE L2 -10 3416 3358 1 619 1023 88 24 24 chr6 4582748 4582912 -144934125 + L1_Mus1 LINE L1 6404 6567 0 1 619 227 222 0 0 chr6 4583013 4583058 -144933979 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 619 21 0 0 0 chr6 4583563 4583584 -144933453 + AT_rich Low_complexity Low_complexity 1 21 0 1 619 319 309 11 0 chr6 4584864 4584958 -144932079 - MLT1A0 LTR MaLR 0 365 271 1 619 441 231 40 40 chr6 4584989 4585115 -144931922 - MLT1A0 LTR MaLR -205 160 35 1 619 1211 68 0 0 chr6 4586093 4586241 -144930796 + B1_Mus1 SINE Alu 1 148 0 1 619 228 23 21 64 chr6 4586243 4586290 -144930747 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 1 619 307 57 57 0 chr6 4586312 4586365 -144930672 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 1 619 579 154 27 3 chr6 4586381 4586504 -144930533 - B1_Mur3 SINE Alu -10 139 6 1 619 722 139 50 6 chr6 4586679 4586838 -144930199 - Lx2B LINE L1 -6 6994 6829 1 619 22 0 0 0 chr6 4587172 4587194 -144929843 + AT_rich Low_complexity Low_complexity 1 22 0 1 620 188 0 74 0 chr6 4588473 4588500 -144928537 + (TGGG)n Simple_repeat Simple_repeat 1 29 0 1 620 209 132 0 26 chr6 4588539 4588578 -144928459 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 620 422 18 0 18 chr6 4588578 4588634 -144928403 + (TGAG)n Simple_repeat Simple_repeat 4 58 0 1 620 1150 50 0 7 chr6 4589649 4589790 -144927247 + B1_Mm SINE Alu 1 140 -7 1 620 477 0 0 0 chr6 4589790 4589843 -144927194 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 1 620 283 254 41 102 chr6 4590200 4590298 -144926739 - MTE2a LTR MaLR 0 419 282 1 620 212 77 0 25 chr6 4592858 4592898 -144924139 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 620 24 0 0 0 chr6 4593011 4593035 -144924002 + AT_rich Low_complexity Low_complexity 1 24 0 1 620 412 117 26 0 chr6 4594638 4594715 -144922322 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 1 620 333 162 27 0 chr6 4594874 4594948 -144922089 + MADE2 DNA Mariner 5 80 0 1 620 981 121 81 0 chr6 4594975 4595149 -144921888 - Lx2 LINE L1 -10 6987 6800 1 620 6818 99 8 30 chr6 4595149 4596211 -144920826 + Lx2 LINE L1 5763 6800 -197 1 620 221 291 128 0 chr6 4596629 4596715 -144920322 + RSINE1 SINE B4 24 120 -45 1 620 1256 20 0 7 chr6 4596715 4596862 -144920175 + B1_Mm SINE Alu 2 147 0 1 620 189 0 111 0 chr6 4596862 4596898 -144920139 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 1 620 229 254 0 181 chr6 4596898 4596934 -144920103 + RSINE1 SINE B4 107 136 -29 1 620 536 65 13 0 chr6 4596934 4597011 -144920026 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 620 229 254 0 181 chr6 4597011 4597046 -144919991 + RSINE1 SINE B4 137 165 0 1 620 181 327 222 63 chr6 4597709 4597923 -144919114 + L2 LINE L2 1965 2197 -1222 1 620 876 20 0 0 chr6 4597923 4598025 -144919012 + (TTC)n Simple_repeat Simple_repeat 2 103 0 1 620 1135 76 0 0 chr6 4598025 4598169 -144918868 - B1_Mus1 SINE Alu -3 145 2 1 620 181 327 222 63 chr6 4598169 4598606 -144918431 + L2 LINE L2 2198 2720 -699 1 620 486 303 143 22 chr6 4598685 4598867 -144918170 - B4 SINE B4 -39 253 50 1 620 23 0 0 0 chr6 4599555 4599578 -144917459 + AT_rich Low_complexity Low_complexity 1 23 0 1 620 265 407 47 21 chr6 4599649 4599885 -144917152 + Charlie8 DNA MER1_type 751 992 -1436 1 620 4101 42 4 0 chr6 4599959 4600453 -144916584 - L1_Mus1 LINE L1 0 6567 6072 1 620 3334 48 2 2 chr6 4600955 4601373 -144915664 - L1Md_F2 LINE L1 0 6582 6165 1 620 1115 64 0 0 chr6 4601490 4601630 -144915407 + B1_Mus1 SINE Alu 1 140 -8 1 620 1387 288 19 0 chr6 4601764 4602129 -144914908 - MTEb LTR MaLR 0 379 8 1 620 338 269 45 0 chr6 4603133 4603235 -144913802 - MTEb LTR MaLR -34 345 238 1 620 520 271 25 0 chr6 4603338 4603456 -144913581 + B1_Mur1 SINE Alu 2 122 -27 1 620 937 31 0 72 chr6 4603725 4603863 -144913174 - B1_Mm SINE Alu -18 129 2 1 620 1003 85 32 25 chr6 4604000 4604157 -144912880 + B2_Mm2 SINE B2 4 161 -34 1 620 191 36 36 0 chr6 4604157 4604185 -144912852 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 620 603 0 0 0 chr6 4605197 4605264 -144911773 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 1 620 240 35 0 0 chr6 4605307 4605336 -144911701 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 620 522 0 0 0 chr6 4605336 4605393 -144911644 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 620 24 32 0 0 chr6 4605471 4605502 -144911535 + AT_rich Low_complexity Low_complexity 1 31 0 1 620 642 220 52 16 chr6 4605522 4605716 -144911321 + Lx6 LINE L1 7188 7388 -72 1 620 383 269 8 0 chr6 4606213 4606332 -144910705 + (TG)n Simple_repeat Simple_repeat 2 121 0 1 620 288 382 81 34 chr6 4607784 4608082 -144908955 - LTR16B LTR ERVL -26 437 126 1 620 21 0 0 0 chr6 4608463 4608484 -144908553 + AT_rich Low_complexity Low_complexity 1 21 0 1 620 223 182 0 0 chr6 4608560 4608604 -144908433 + A-rich Low_complexity Low_complexity 1 44 0 1 620 27 0 0 0 chr6 4609439 4609466 -144907571 + AT_rich Low_complexity Low_complexity 1 27 0 1 620 939 115 0 0 chr6 4610055 4610273 -144906764 + (TG)n Simple_repeat Simple_repeat 1 218 0 1 620 320 274 74 19 chr6 4610291 4610399 -144906638 - B4 SINE B4 -53 239 126 1 620 777 309 38 44 chr6 4610891 4611256 -144905781 - MLT1A0 LTR MaLR -2 363 1 1 620 1236 94 16 11 chr6 4611837 4612020 -144905017 - B2_Mm2 SINE B2 -9 186 3 1 620 396 0 0 0 chr6 4612344 4612388 -144904649 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 620 4809 125 5 22 chr6 4612787 4613558 -144903479 + Lx2 LINE L1 6239 6996 -1 1 620 259 284 49 0 chr6 4613708 4613810 -144903227 - L1M4c LINE L1 -867 5515 5409 1 620 26 0 0 0 chr6 4613888 4613914 -144903123 + AT_rich Low_complexity Low_complexity 1 26 0 1 620 372 274 88 19 chr6 4614093 4614253 -144902784 - L1MA4 LINE L1 -375 5925 5755 1 620 310 269 56 37 chr6 4614496 4614604 -144902433 - L1M4c LINE L1 -1188 5194 5085 1 620 1180 50 0 0 chr6 4614831 4614972 -144902065 + B1_Mus2 SINE Alu 2 142 -5 1 620 908 251 47 5 chr6 4615020 4615232 -144901805 + ID_B1 SINE B4 2 222 -2 1 620 382 270 79 6 chr6 4615265 4615429 -144901608 - L1M4c LINE L1 -3983 2401 2226 1 620 349 181 29 7 chr6 4615507 4615646 -144901391 + (CA)n Simple_repeat Simple_repeat 2 143 0 1 620 1102 298 40 29 chr6 4615813 4616187 -144900850 + MTEa LTR MaLR 2 379 0 1 620 475 275 7 13 chr6 4616383 4616534 -144900503 - L1M4c LINE L1 -4643 1741 1592 1 620 279 329 73 73 chr6 4616952 4617116 -144899921 + MLT1H2 LTR MaLR 8 171 -318 1 620 208 347 20 20 chr6 4618149 4618249 -144898788 + L2 LINE L2 2542 2641 -778 1 620 302 412 13 13 chr6 4618399 4618554 -144898483 - RSINE1 SINE B4 -9 156 2 1 620 400 340 118 3 chr6 4618590 4618879 -144898158 - L1MC4 LINE L1 -250 7792 7471 1 620 225 0 0 0 chr6 4619359 4619384 -144897653 + (GGA)n Simple_repeat Simple_repeat 1 25 0 1 620 189 391 29 7 chr6 4620150 4620289 -144896748 + L2 LINE L2 2348 2489 -930 1 620 330 26 0 0 chr6 4621268 4621307 -144895730 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 620 700 164 7 22 chr6 4621326 4621463 -144895574 - Lx4A LINE L1 0 7058 6924 1 620 1179 55 7 0 chr6 4621487 4621632 -144895405 - B1_Mus2 SINE Alu 0 147 2 1 620 876 107 189 0 chr6 4622641 4622800 -144894237 + B2_Mm2 SINE B2 1 189 -6 1 620 240 230 10 0 chr6 4622865 4622922 -144894115 + PB1D10 SINE Alu 13 72 -77 1 620 288 0 0 0 chr6 4623964 4623996 -144893041 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 620 219 207 35 58 chr6 4624909 4624996 -144892041 + (CATATA)n Simple_repeat Simple_repeat 3 87 0 1 620 3275 67 2 5 chr6 4625702 4626125 -144890912 + L1_Mus1 LINE L1 6144 6565 -2 1 620 378 0 0 0 chr6 4628971 4629013 -144888024 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 620 834 85 0 0 chr6 4629013 4629141 -144887896 + (GA)n Simple_repeat Simple_repeat 2 130 0 1 620 535 189 42 139 chr6 4629156 4629322 -144887715 + B4 SINE B4 70 219 -73 2 620 1106 49 0 20 chr6 4629186 4629332 -144887705 + B1_Mus1 SINE Alu 6 148 0 2 620 219 133 0 0 chr6 4629333 4629378 -144887659 + (A)n Simple_repeat Simple_repeat 1 45 0 2 620 603 272 31 31 chr6 4629464 4629627 -144887410 - RSINE1 SINE B4 0 165 3 2 620 23 0 0 0 chr6 4629702 4629725 -144887312 + AT_rich Low_complexity Low_complexity 1 23 0 2 620 444 320 50 39 chr6 4629749 4630032 -144887005 + B4A SINE B4 1 286 -6 2 620 509 339 42 25 chr6 4630722 4631006 -144886031 + B4A SINE B4 3 291 -1 2 620 236 196 20 0 chr6 4631010 4631061 -144885976 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 620 368 248 48 38 chr6 4631155 4631260 -144885777 - PB1D9 SINE Alu -1 119 14 2 620 1200 49 0 0 chr6 4632032 4632174 -144884863 + B1_Mus1 SINE Alu 2 143 -5 2 620 278 330 46 0 chr6 4632500 4632609 -144884428 + B1F SINE Alu 9 122 -27 2 620 1992 79 41 7 chr6 4633790 4634082 -144882955 - L1_Mus4 LINE L1 0 6636 6335 2 620 294 29 0 0 chr6 4635483 4635518 -144881519 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 2 620 277 300 47 30 chr6 4635557 4635761 -144881276 + L1MD3 LINE L1 7678 7840 -155 2 620 1160 75 0 0 chr6 4635953 4636100 -144880937 + B1_Mus2 SINE Alu 1 147 0 2 620 288 130 0 0 chr6 4636100 4636146 -144880891 + (A)n Simple_repeat Simple_repeat 1 46 0 2 620 1058 276 34 10 chr6 4636972 4637265 -144879772 - Tigger14a DNA MER2_type 0 324 25 2 620 533 347 7 0 chr6 4637735 4637879 -144879158 + RSINE1 SINE B4 1 145 -20 2 620 342 0 0 0 chr6 4638534 4638572 -144878465 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 620 505 257 35 42 chr6 4638918 4639060 -144877977 + ID_B1 SINE B4 84 224 0 2 620 24 0 0 0 chr6 4640958 4640982 -144876055 + AT_rich Low_complexity Low_complexity 1 24 0 2 620 525 16 0 0 chr6 4641896 4641958 -144875079 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 620 186 43 0 0 chr6 4642494 4642517 -144874520 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2 620 276 236 179 0 chr6 4642633 4642747 -144874290 - B1_Mur1 SINE Alu 0 149 2 2 620 212 0 36 0 chr6 4642790 4642818 -144874219 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 620 489 97 0 0 chr6 4643172 4643244 -144873793 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 620 209 245 19 0 chr6 4644374 4644427 -144872610 - L2a LINE L2 0 3426 3373 2 620 21 36 0 0 chr6 4644966 4644994 -144872043 + AT_rich Low_complexity Low_complexity 1 28 0 2 620 246 309 96 32 chr6 4645190 4645377 -144871660 + L1MB3 LINE L1 4746 4944 -1202 2 620 188 34 0 33 chr6 4645541 4645571 -144871466 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 620 410 306 160 42 chr6 4645571 4646264 -144870773 + L1MC1 LINE L1 74 848 -5660 2 620 511 224 28 17 chr6 4646313 4646490 -144870547 + L1MC1 LINE L1 3073 3251 -3070 2 620 226 259 37 9 chr6 4646489 4646598 -144870439 + L1MC1 LINE L1 3490 3601 -2720 2 620 699 46 0 0 chr6 4646627 4646714 -144870323 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 620 736 300 178 24 chr6 4647019 4648357 -144868680 + L1MC1 LINE L1 3925 5467 -854 2 620 650 239 119 5 chr6 4648375 4648568 -144868469 + ID_B1 SINE B4 2 216 -8 2 620 221 210 0 16 chr6 4648569 4648632 -144868405 + GA-rich Low_complexity Low_complexity 3 64 0 2 620 1002 244 188 37 chr6 4648659 4649523 -144867514 + L1MC1 LINE L1 5490 6508 0 2 620 1237 243 77 36 chr6 4649533 4650361 -144866676 + L1MB3 LINE L1 5005 5890 -293 2 620 504 289 85 8 chr6 4650619 4650748 -144866289 - B1F SINE Alu -2 147 9 2 620 294 304 95 4 chr6 4651419 4651650 -144865387 - L1ME4a LINE L1 -186 5938 5687 2 620 389 325 65 76 chr6 4651731 4652098 -144864939 + L2 LINE L2 2408 2770 -649 2 620 1034 156 120 5 chr6 4652498 4652698 -144864339 - URR1A DNA MER1_type -3 223 1 2 620 200 184 0 0 chr6 4653725 4653763 -144863274 + (CACG)n Simple_repeat Simple_repeat 3 40 0 2 620 263 331 81 43 chr6 4653874 4654035 -144863002 - L4 LINE RTE -649 1380 1214 2 620 351 0 0 0 chr6 4654603 4654642 -144862395 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 620 298 307 43 56 chr6 4656487 4656649 -144860388 - MIRb SINE MIR -71 197 38 2 620 688 202 0 30 chr6 4657435 4657568 -144859469 + B1F2 SINE Alu 1 129 -20 2 620 387 0 0 0 chr6 4657570 4657613 -144859424 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 620 205 222 0 22 chr6 4657615 4657661 -144859376 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 2 620 427 311 9 0 chr6 4657689 4657795 -144859242 + MER2B DNA MER2_type 207 313 -23 2 620 25 31 0 0 chr6 4657835 4657867 -144859170 + AT_rich Low_complexity Low_complexity 1 32 0 2 620 436 174 115 11 chr6 4660539 4660626 -144856411 + B1_Mur3 SINE Alu 52 147 -2 2 620 1137 58 0 0 chr6 4662823 4662961 -144854076 - B1_Mus1 SINE Alu -9 139 2 2 620 204 231 0 0 chr6 4663084 4663136 -144853901 + T-rich Low_complexity Low_complexity 1 52 0 2 620 279 0 0 0 chr6 4663188 4663219 -144853818 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 620 920 106 38 0 chr6 4663219 4663351 -144853686 - B1_Mus1 SINE Alu -10 138 2 2 620 300 343 50 96 chr6 4663936 4664333 -144852704 - L1ME3B LINE L1 -252 5988 5610 2 620 271 294 39 0 chr6 4664532 4664634 -144852403 - L1ME3B LINE L1 -846 5300 5195 2 620 624 362 68 35 chr6 4664680 4665226 -144851811 - L1ME3B LINE L1 -1051 5095 4532 2 620 328 345 66 33 chr6 4665449 4665692 -144851345 - L1ME3B LINE L1 -1940 4206 3956 2 620 30 27 0 0 chr6 4665817 4665854 -144851183 + AT_rich Low_complexity Low_complexity 1 37 0 2 620 374 184 68 11 chr6 4666038 4666126 -144850911 - HAL1-3A_ME LINE L1 -790 2068 1976 2 620 512 162 28 28 chr6 4666149 4666327 -144850710 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 620 484 172 31 13 chr6 4666347 4666579 -144850458 + (TG)n Simple_repeat Simple_repeat 1 236 0 2 620 646 169 12 20 chr6 4666615 4666867 -144850170 + (TG)n Simple_repeat Simple_repeat 1 249 0 2 620 497 163 35 11 chr6 4666890 4667064 -144849973 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 620 520 259 74 13 chr6 4667475 4667624 -144849413 + RSINE1 SINE B4 8 165 0 2 620 33 56 0 0 chr6 4667641 4667695 -144849342 + AT_rich Low_complexity Low_complexity 1 54 0 2 620 226 183 14 14 chr6 4670546 4670618 -144846419 + (CAAA)n Simple_repeat Simple_repeat 2 73 0 2 620 605 217 40 47 chr6 4670784 4670934 -144846103 + B1F SINE Alu 1 149 0 2 620 357 24 0 0 chr6 4670962 4671004 -144846033 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 2 620 580 321 98 62 chr6 4674147 4674596 -144842441 - Tigger15a DNA TcMar -192 523 59 2 620 472 223 54 0 chr6 4676857 4676969 -144840068 - B3A SINE B2 -80 118 1 2 620 23 0 0 0 chr6 4677593 4677616 -144839421 + AT_rich Low_complexity Low_complexity 1 23 0 2 620 219 103 0 0 chr6 4678059 4678098 -144838939 + (CAGT)n Simple_repeat Simple_repeat 2 40 0 2 620 805 36 0 9 chr6 4678819 4678931 -144838106 + B1_Mus1 SINE Alu 37 147 -1 2 620 1110 96 11 11 chr6 4678931 4679111 -144837926 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 620 27 49 0 0 chr6 4679188 4679229 -144837808 + AT_rich Low_complexity Low_complexity 1 41 0 2 620 403 291 78 25 chr6 4681345 4681549 -144835488 + B3 SINE B2 1 215 -1 2 620 1194 68 0 0 chr6 4683676 4683823 -144833214 - B1_Mus2 SINE Alu 0 147 1 2 620 243 0 0 0 chr6 4683949 4683976 -144833061 + (T)n Simple_repeat Simple_repeat 1 27 0 2 620 348 24 0 0 chr6 4684009 4684050 -144832987 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 620 315 380 18 37 chr6 4684051 4684215 -144832822 - RSINE1 SINE B4 -2 163 3 2 620 1023 122 0 0 chr6 4685381 4685690 -144831347 + (TG)n Simple_repeat Simple_repeat 1 309 0 2 620 702 167 0 0 chr6 4685707 4685887 -144831150 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 620 309 89 0 0 chr6 4685887 4685932 -144831105 - HAL1-3A_ME LINE L1 -840 2018 1974 2 620 741 136 0 0 chr6 4685941 4686095 -144830942 + (TG)n Simple_repeat Simple_repeat 1 154 0 2 620 33 25 0 0 chr6 4686354 4686394 -144830643 + AT_rich Low_complexity Low_complexity 1 40 0 2 620 216 299 112 66 chr6 4686462 4686659 -144830378 - MIR SINE MIR -40 222 17 2 620 243 0 0 0 chr6 4687110 4687137 -144829900 + (T)n Simple_repeat Simple_repeat 1 27 0 2 620 627 58 0 0 chr6 4687137 4687224 -144829813 - B1_Mm SINE Alu 0 147 61 2 620 198 171 0 0 chr6 4687251 4687292 -144829745 + A-rich Low_complexity Low_complexity 5 45 0 2 620 290 348 43 7 chr6 4688867 4689006 -144828031 + L2 LINE L2 2764 2907 -512 2 620 219 139 0 0 chr6 4689606 4689642 -144827395 + (A)n Simple_repeat Simple_repeat 1 36 0 2 620 339 324 331 4 chr6 4691794 4692057 -144824980 - L3 LINE CR1 -187 4302 3954 2 620 360 0 0 0 chr6 4693076 4693116 -144823921 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 620 189 0 0 0 chr6 4696394 4696415 -144820622 + (A)n Simple_repeat Simple_repeat 1 21 0 2 620 228 167 0 53 chr6 4697230 4697287 -144819750 + C-rich Low_complexity Low_complexity 6 59 0 2 620 44 20 0 0 chr6 4699698 4699749 -144817288 + AT_rich Low_complexity Low_complexity 1 51 0 2 620 192 125 0 0 chr6 4699897 4699929 -144817108 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 620 189 233 0 0 chr6 4699983 4700026 -144817011 + L2a LINE L2 3377 3419 -7 2 620 21 0 0 0 chr6 4702475 4702496 -144814541 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 24 77 0 0 chr6 4702532 4702584 -144814453 + AT_rich Low_complexity Low_complexity 1 52 0 2 620 593 160 13 26 chr6 4703030 4703184 -144813853 - Lx2B LINE L1 0 7000 6849 2 620 195 94 0 0 chr6 4704249 4704276 -144812761 + (CCCCCT)n Simple_repeat Simple_repeat 2 28 0 2 620 207 0 0 0 chr6 4704276 4704299 -144812738 + (CAA)n Simple_repeat Simple_repeat 1 23 0 2 620 220 328 0 0 chr6 4706109 4706286 -144810751 + (CACCAT)n Simple_repeat Simple_repeat 4 180 0 2 620 312 83 0 0 chr6 4707168 4707216 -144809821 + (CCA)n Simple_repeat Simple_repeat 1 48 0 2 620 224 209 23 0 chr6 4707485 4707528 -144809509 + GA-rich Low_complexity Low_complexity 2 45 0 2 620 392 165 30 30 chr6 4709697 4709866 -144807171 + (ATAAG)n Simple_repeat Simple_repeat 1 169 0 2 620 305 299 7 39 chr6 4710190 4710397 -144806640 + CT-rich Low_complexity Low_complexity 1 200 0 2 620 456 261 100 0 chr6 4712734 4712864 -144804173 + RSINE1 SINE B4 2 144 -21 3 620 198 0 0 0 chr6 4713220 4713242 -144803795 + (TA)n Simple_repeat Simple_repeat 1 22 0 3 620 697 95 79 8 chr6 4713242 4713369 -144803668 - Lx LINE L1 -34 6620 6485 3 620 411 73 0 0 chr6 4713452 4713507 -144803530 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 620 2551 110 66 2 chr6 4714145 4714554 -144802483 + Lx2 LINE L1 6562 6996 -1 3 620 24 32 0 0 chr6 4714577 4714608 -144802429 + AT_rich Low_complexity Low_complexity 1 31 0 3 620 293 225 0 14 chr6 4715088 4715160 -144801877 + B4 SINE B4 3 73 -219 3 620 33 0 0 0 chr6 4715266 4715299 -144801738 + AT_rich Low_complexity Low_complexity 1 33 0 3 620 21 0 0 0 chr6 4715813 4715834 -144801203 + AT_rich Low_complexity Low_complexity 1 21 0 3 620 5126 14 0 0 chr6 4715834 4716401 -144800636 - L1Md_T LINE L1 0 6582 6016 3 620 2078 122 47 0 chr6 4716560 4716903 -144800134 - ORR1B2 LTR MaLR -8 359 1 3 620 7081 186 43 33 chr6 4716977 4718355 -144798682 - Lx5 LINE L1 0 7050 5658 3 621 1319 180 23 12 chr6 4718606 4718864 -144798173 - ORR1D1 LTR MaLR -111 263 3 3 621 2427 242 48 40 chr6 4718864 4719692 -144797345 + ORR1D1-int LTR MaLR 184 933 -576 3 621 2534 68 3 58 chr6 4719692 4720038 -144796999 - ORR1A2 LTR MaLR 0 327 1 3 621 2427 179 118 23 chr6 4720038 4720546 -144796491 + ORR1D1-int LTR MaLR 798 1366 -4 3 621 1488 201 58 28 chr6 4720550 4720736 -144796301 + ORR1D1 LTR MaLR 1 189 -185 3 621 3505 20 5 0 chr6 4720736 4721130 -144795907 - MTA_Mm LTR MaLR 0 396 1 3 621 1488 201 58 28 chr6 4721130 4721306 -144795731 + ORR1D1 LTR MaLR 190 373 -1 3 621 890 287 232 3 chr6 4721334 4721723 -144795314 - Lx6 LINE L1 -657 6803 6326 3 621 2041 193 44 15 chr6 4721816 4721896 -144795141 - RLTR16 LTR ERVK -13 492 413 3 621 297 0 0 0 chr6 4721896 4721929 -144795108 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 621 576 0 0 0 chr6 4721929 4721992 -144795045 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 621 2210 204 36 6 chr6 4721992 4722388 -144794649 - RLTR16 LTR ERVK -93 412 3 3 621 1000 284 36 18 chr6 4722388 4722712 -144794325 - RLTR16 LTR ERVK -18 487 158 3 621 444 37 0 0 chr6 4722713 4722767 -144794270 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 621 607 270 80 33 chr6 4723067 4723553 -144793484 - L1M2 LINE L1 -2719 3424 2916 3 621 281 319 28 0 chr6 4723712 4723784 -144793253 - ID SINE ID -150 74 1 3 621 348 214 167 0 chr6 4724014 4724098 -144792939 + B4A SINE B4 128 225 -67 3 621 4096 264 33 55 chr6 4724099 4725336 -144791701 - ORR1B1-int LTR MaLR -160 1210 1 3 621 2117 138 82 14 chr6 4725336 4725702 -144791335 - ORR1B1 LTR MaLR 0 394 4 3 621 189 74 0 0 chr6 4725707 4725734 -144791303 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 621 21 36 0 0 chr6 4726346 4726374 -144790663 + AT_rich Low_complexity Low_complexity 1 28 0 3 621 455 286 40 26 chr6 4726482 4726633 -144790404 - RSINE1 SINE B4 -11 154 2 3 621 1025 102 0 57 chr6 4727568 4727745 -144789292 - L1Md_F2 LINE L1 0 6582 6416 3 621 8533 144 125 5 chr6 4727745 4729397 -144787640 - L1_Mur2 LINE L1 -362 5515 3666 3 621 1456 81 0 0 chr6 4729394 4729605 -144787432 + L1_Mm LINE L1 3489 3699 -2184 3 621 5843 98 37 2 chr6 4729602 4730552 -144786485 - L1_Mm LINE L1 -3608 2275 1293 3 621 763 237 121 21 chr6 4730757 4730947 -144786090 - ORR1C1 LTR MaLR -169 209 1 3 621 1912 188 84 9 chr6 4730948 4731414 -144785623 - L1_Mur3 LINE L1 -1350 4530 4030 3 621 8929 176 63 53 chr6 4731429 4734944 -144782093 - L1_Mur3 LINE L1 -2273 3607 61 3 621 2536 187 45 8 chr6 4734988 4735495 -144781542 + RLTR11A LTR ERVK 3 528 0 3 621 258 32 0 0 chr6 4735599 4735630 -144781407 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 621 1537 186 98 9 chr6 4735642 4735968 -144781069 + ORR1B1 LTR MaLR 39 393 -1 3 621 786 81 0 0 chr6 4736634 4736758 -144780279 + (TC)n Simple_repeat Simple_repeat 1 124 0 3 621 1280 129 30 0 chr6 4736762 4736964 -144780073 - ORR1A3 LTR MaLR -119 208 1 3 621 7886 146 61 16 chr6 4736964 4738423 -144778614 - ORR1A3-int LTR MaLR 0 1963 440 3 621 518 127 0 0 chr6 4738425 4738504 -144778533 - ORR1A3-int LTR MaLR -1882 81 3 3 621 2170 93 46 0 chr6 4738510 4738812 -144778225 - ORR1A3 LTR MaLR -8 318 3 3 621 342 0 0 0 chr6 4739358 4739396 -144777641 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 621 486 0 0 0 chr6 4740120 4740174 -144776863 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 621 1260 256 57 30 chr6 4740276 4740475 -144776562 - MTEa LTR MaLR 0 379 183 3 621 369 0 0 0 chr6 4740475 4740516 -144776521 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 621 1260 256 57 30 chr6 4740516 4740683 -144776354 - MTEa LTR MaLR -197 182 3 3 621 323 308 56 70 chr6 4740684 4740710 -144776327 + B4 SINE B4 58 81 -211 3 621 597 290 0 28 chr6 4740710 4740852 -144776185 + B1_Mur1 SINE Alu 1 138 -11 3 621 274 293 47 19 chr6 4740862 4740946 -144776091 - L1M2 LINE L1 -3026 3117 3035 3 621 4711 48 0 2 chr6 4740946 4741527 -144775510 - L1Md_F2 LINE L1 -2 6580 6001 3 621 274 293 47 19 chr6 4741527 4741654 -144775383 - L1M2 LINE L1 -3109 3034 2901 3 621 376 186 39 10 chr6 4741644 4741747 -144775290 - Lx9 LINE L1 -2 7642 7537 3 621 342 0 0 0 chr6 4741747 4741785 -144775252 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 621 1802 199 70 37 chr6 4741786 4742275 -144774762 - Lx9 LINE L1 -186 7458 6954 3 621 980 198 30 105 chr6 4743476 4743781 -144773256 - RMER1C Other Other 0 1342 1061 3 621 6419 81 14 21 chr6 4744326 4745274 -144771763 - L1Md_F2 LINE L1 0 6582 5642 3 621 343 306 39 56 chr6 4745454 4745634 -144771403 + L1M5 LINE L1 3059 3235 -2911 3 621 572 186 0 5 chr6 4745753 4745975 -144771062 + (TG)n Simple_repeat Simple_repeat 1 220 0 3 621 496 311 49 80 chr6 4746047 4746396 -144770641 + LTR37B LTR ERV1 3 340 -128 3 621 221 180 240 0 chr6 4746395 4746445 -144770592 - ID SINE ID -162 62 1 3 621 607 360 30 30 chr6 4746483 4746784 -144770253 + LTR40a LTR ERVL 6 306 -213 3 621 26 0 0 0 chr6 4747419 4747445 -144769592 + AT_rich Low_complexity Low_complexity 1 26 0 3 621 429 245 15 10 chr6 4747575 4747787 -144769250 + (TA)n Simple_repeat Simple_repeat 1 213 0 3 621 357 43 0 0 chr6 4748771 4748818 -144768219 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 621 471 35 0 0 chr6 4748840 4748897 -144768140 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 621 510 61 0 0 chr6 4749302 4749368 -144767669 + (GA)n Simple_repeat Simple_repeat 2 67 0 3 621 877 206 18 81 chr6 4749436 4749658 -144767379 + B3 SINE B2 5 212 -4 3 621 590 350 82 7 chr6 4750376 4750669 -144766368 - ORR1E LTR MaLR -43 316 2 3 621 296 132 29 0 chr6 4751063 4751131 -144765906 + (CAGAGA)n Simple_repeat Simple_repeat 1 70 0 3 621 233 325 0 0 chr6 4752911 4752991 -144764046 - ID4_ SINE ID -2 81 2 3 621 324 0 0 0 chr6 4753766 4753802 -144763235 + (CAA)n Simple_repeat Simple_repeat 3 38 0 3 621 3184 77 2 5 chr6 4753828 4754248 -144762789 + L1_Mus1 LINE L1 6149 6567 0 3 621 201 321 0 0 chr6 4754368 4754421 -144762616 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 621 503 261 12 76 chr6 4754431 4754613 -144762424 + L1MB2 LINE L1 5939 6118 -53 3 621 2397 131 87 2 chr6 4754613 4755025 -144762012 + Lx2 LINE L1 6551 6997 0 3 621 503 261 12 76 chr6 4755025 4755091 -144761946 + L1MB2 LINE L1 6119 6171 0 3 621 218 254 61 45 chr6 4755841 4755907 -144761130 + BC1_Mm scRNA scRNA 16 82 -70 3 621 557 294 167 47 chr6 4755935 4756420 -144760617 + MER67A LTR ERV1 1 543 0 3 621 240 312 43 0 chr6 4757442 4757535 -144759502 + MER89 LTR ERV1 1 97 -462 3 621 501 278 76 22 chr6 4757507 4757691 -144759346 + MER89 LTR ERV1 203 396 -163 3 621 569 266 101 0 chr6 4757834 4758022 -144759015 - B3 SINE B2 -6 210 4 3 621 415 236 187 40 chr6 4758832 4759057 -144757980 + MER89-int LTR ERV1 879 1136 -5665 3 621 216 167 0 0 chr6 4759126 4759174 -144757863 + GA-rich Low_complexity Low_complexity 1 48 0 3 621 316 312 144 31 chr6 4759189 4759480 -144757557 + MER89-int LTR ERV1 1252 1575 -5226 3 621 262 329 33 83 chr6 4759616 4759918 -144757119 + MER89-int LTR ERV1 1676 1962 -4839 3 621 226 151 0 147 chr6 4759951 4760060 -144756977 + (CAGCC)n Simple_repeat Simple_repeat 4 96 0 3 621 784 84 0 0 chr6 4760307 4760414 -144756623 + B1_Mus2 SINE Alu 41 147 0 3 621 180 0 0 0 chr6 4760414 4760434 -144756603 + (A)n Simple_repeat Simple_repeat 1 20 0 3 621 524 245 19 0 chr6 4760722 4760828 -144756209 + B1_Mur1 SINE Alu 22 129 -20 3 621 661 237 14 86 chr6 4760850 4761044 -144755993 + ID_B1 SINE B4 64 244 -48 3 621 474 18 0 0 chr6 4761850 4761905 -144755132 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 621 31 58 0 0 chr6 4762017 4762069 -144754968 + AT_rich Low_complexity Low_complexity 1 52 0 3 621 238 308 99 34 chr6 4765455 4765837 -144751200 - L1MC4 LINE L1 -422 7620 7204 3 621 389 237 203 23 chr6 4766837 4767014 -144750023 - B3 SINE B2 -7 209 1 3 621 428 302 0 0 chr6 4767477 4767583 -144749454 + B1F2 SINE Alu 39 144 -5 3 621 333 0 0 0 chr6 4767583 4767620 -144749417 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 621 2085 180 15 22 chr6 4767813 4768223 -144748814 - MTB_Mm LTR MaLR 0 407 1 3 621 295 330 135 49 chr6 4768394 4768639 -144748398 - LTR48B LTR ERV1 -256 388 123 3 621 850 177 7 0 chr6 4769485 4769626 -144747411 + B1_Mur3 SINE Alu 8 149 0 3 621 1826 168 65 9 chr6 4769752 4770088 -144746949 + ORR1B2 LTR MaLR 5 359 -8 3 621 5044 34 0 0 chr6 4771021 4771609 -144745428 - L1Md_F2 LINE L1 -2 6580 5993 3 621 606 179 147 122 chr6 4771681 4771885 -144745152 - B3 SINE B2 -6 210 2 3 621 577 260 166 7 chr6 4772443 4772714 -144744323 + L1MC4a LINE L1 6547 6894 -988 3 621 346 280 33 33 chr6 4772943 4773065 -144743972 - ORR1D1 LTR MaLR -248 126 5 3 621 234 121 42 42 chr6 4773115 4773210 -144743827 + (CAAA)n Simple_repeat Simple_repeat 3 97 0 3 621 2294 78 0 0 chr6 4773217 4773524 -144743513 - L1_Mm LINE L1 -88 5795 5489 3 621 3305 56 17 0 chr6 4773525 4773938 -144743099 + L1_Mus1 LINE L1 6146 6565 -2 3 621 24 0 0 0 chr6 4773938 4773962 -144743075 + AT_rich Low_complexity Low_complexity 1 24 0 3 621 560 320 47 35 chr6 4774118 4774647 -144742390 + L1MC4a LINE L1 7215 7780 -215 3 621 24 0 0 0 chr6 4775352 4775376 -144741661 + AT_rich Low_complexity Low_complexity 1 24 0 3 621 548 234 46 133 chr6 4775683 4775924 -144741113 + LTR37B LTR ERV1 58 277 -191 4 621 390 21 0 0 chr6 4776011 4776058 -144740979 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 621 254 268 35 9 chr6 4776068 4776181 -144740856 + (TA)n Simple_repeat Simple_repeat 1 116 0 4 621 225 237 52 13 chr6 4776203 4776280 -144740757 + LTR37B LTR ERV1 362 441 -27 4 621 654 224 14 7 chr6 4776608 4776756 -144740281 - B1_Mur3 SINE Alu 0 149 1 4 621 204 97 0 0 chr6 4776986 4777017 -144740020 + (TTA)n Simple_repeat Simple_repeat 1 31 0 4 621 219 69 0 0 chr6 4777727 4777756 -144739281 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 621 239 200 106 43 chr6 4777760 4777854 -144739183 + MER72B LTR ERV1 479 578 -190 4 621 232 329 0 0 chr6 4778056 4778126 -144738911 - ID2 SINE ID -13 70 1 4 621 219 69 0 0 chr6 4779463 4779492 -144737545 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 621 296 394 10 0 chr6 4779512 4779611 -144737426 - MER91A DNA Tip100 -96 100 1 4 621 1041 313 114 54 chr6 4779781 4780352 -144736685 + MER67B LTR ERV1 1 605 -56 4 621 916 219 52 0 chr6 4780391 4780583 -144736454 - B3 SINE B2 -11 205 4 4 621 519 310 16 0 chr6 4781446 4781575 -144735462 + ID_B1 SINE B4 85 215 -9 4 621 539 289 56 12 chr6 4781674 4781835 -144735202 + B4A SINE B4 119 286 -6 4 621 689 290 5 5 chr6 4781987 4782202 -144734835 + Lx8 LINE L1 6816 7030 -443 4 621 1358 194 52 28 chr6 4782598 4782798 -144734239 - ORR1B2 LTR MaLR 0 367 160 4 621 370 18 0 66 chr6 4782798 4782859 -144734178 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 4 621 1358 194 52 28 chr6 4782859 4782949 -144734088 - ORR1B2 LTR MaLR -208 159 70 4 621 351 179 0 0 chr6 4783130 4783197 -144733840 + GA-rich Low_complexity Low_complexity 3 69 0 4 621 26 64 0 0 chr6 4783256 4783303 -144733734 + AT_rich Low_complexity Low_complexity 1 47 0 4 621 357 340 43 0 chr6 4783325 4783466 -144733571 + L1MEc LINE L1 1715 1861 -4539 4 621 445 282 0 0 chr6 4783543 4783646 -144733391 - ID_B1 SINE B4 -29 195 93 4 621 1437 210 98 6 chr6 4783647 4783983 -144733054 + ORR1D1 LTR MaLR 2 368 -6 4 621 588 184 310 0 chr6 4784192 4784350 -144732687 + B3 SINE B2 1 207 -9 4 621 588 171 6 184 chr6 4784449 4784607 -144732430 + MT2A LTR ERVL 3 132 -401 4 621 552 254 90 103 chr6 4785733 4786123 -144730914 + RMER10A LTR ERVL 33 417 -25 4 621 523 224 10 24 chr6 4787014 4787108 -144729929 - ORR1B2 LTR MaLR 0 378 233 4 621 285 302 121 59 chr6 4787108 4787170 -144729867 - RMER17C LTR ERVK -37 373 308 4 621 2657 86 72 0 chr6 4787170 4787543 -144729494 + MTB LTR MaLR 1 400 0 4 621 393 282 12 80 chr6 4787543 4787559 -144729478 - ORR1B2 LTR MaLR -152 232 220 4 621 285 302 121 59 chr6 4787559 4787719 -144729318 - RMER17C LTR ERVK -103 307 120 4 621 327 78 0 0 chr6 4787720 4787771 -144729266 + (CAGAGA)n Simple_repeat Simple_repeat 4 54 0 4 621 1249 172 97 12 chr6 4787896 4788143 -144728894 - ORR1B2 LTR MaLR -99 268 1 4 621 1688 154 40 30 chr6 4788732 4789061 -144727976 + ORR1C1 LTR MaLR 1 332 -46 4 621 230 202 66 66 chr6 4789102 4789208 -144727829 + RLTR25B LTR ERVK 397 502 -526 4 621 743 90 0 0 chr6 4789146 4789246 -144727791 + B1_Mus2 SINE Alu 42 141 -6 4 621 324 70 0 0 chr6 4789248 4789291 -144727746 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 4 621 267 264 0 0 chr6 4789291 4789344 -144727693 + ORR1C1 LTR MaLR 326 378 0 4 621 213 265 106 24 chr6 4789669 4789754 -144727283 + PB1D10 SINE Alu 2 93 -24 4 621 24 0 0 0 chr6 4790343 4790367 -144726670 + AT_rich Low_complexity Low_complexity 1 24 0 4 621 217 250 36 0 chr6 4790532 4790588 -144726449 + GA-rich Low_complexity Low_complexity 1 58 0 4 621 234 311 33 0 chr6 4790742 4790864 -144726173 + L1M1 LINE L1 5805 5930 -370 4 621 450 0 0 0 chr6 4791550 4791600 -144725437 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 621 608 343 65 31 chr6 4791611 4792101 -144724936 + L1M4 LINE L1 4169 4675 -1471 4 621 549 44 0 0 chr6 4792103 4792171 -144724866 + (CTTAG)n Simple_repeat Simple_repeat 2 69 0 4 621 437 308 25 19 chr6 4792183 4792342 -144724695 + RSINE1 SINE B4 4 163 -2 4 621 26 0 0 0 chr6 4792386 4792412 -144724625 + AT_rich Low_complexity Low_complexity 1 26 0 4 621 239 368 51 69 chr6 4792958 4793133 -144723904 + ORR1D2 LTR MaLR 61 232 -138 4 621 1798 210 19 3 chr6 4793363 4793735 -144723302 - ORR1C1 LTR MaLR 0 378 1 4 621 460 311 78 7 chr6 4793765 4793921 -144723116 + B3A SINE B2 1 162 -31 4 621 668 111 9 0 chr6 4793922 4794030 -144723007 + (TC)n Simple_repeat Simple_repeat 1 109 0 4 621 630 326 21 29 chr6 4794169 4794554 -144722483 + L1ME2 LINE L1 5773 6154 -10 4 621 854 65 29 0 chr6 4795692 4795831 -144721206 + (GA)n Simple_repeat Simple_repeat 2 144 0 4 621 358 237 277 8 chr6 4795944 4796066 -144720971 + MLT1A LTR MaLR 222 407 -1 4 621 289 40 39 20 chr6 4796330 4796381 -144720656 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 4 621 556 194 114 36 chr6 4796383 4796549 -144720488 + B2_Mm2 SINE B2 3 181 -14 4 621 25 0 0 0 chr6 4797049 4797074 -144719963 + AT_rich Low_complexity Low_complexity 1 25 0 4 621 506 296 81 69 chr6 4797076 4797594 -144719443 + L1MEg LINE L1 1278 1949 -4791 4 621 370 322 155 14 chr6 4797601 4797749 -144719288 + B3 SINE B2 45 213 -3 4 621 355 368 71 32 chr6 4797753 4798093 -144718944 + L1MEg LINE L1 1989 2341 -4399 4 621 246 338 71 48 chr6 4798118 4798286 -144718751 + RMER12 LTR ERVK 686 857 -465 4 621 484 351 52 13 chr6 4798248 4798401 -144718636 - RSINE1 SINE B4 -1 164 6 4 621 22 0 0 0 chr6 4798409 4798431 -144718606 + AT_rich Low_complexity Low_complexity 1 22 0 4 621 212 238 0 9 chr6 4798453 4798559 -144718478 + (TA)n Simple_repeat Simple_repeat 2 106 0 4 621 201 74 0 0 chr6 4798575 4798602 -144718435 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 4 621 302 254 0 67 chr6 4798770 4798865 -144718172 + ID4 SINE ID 12 98 -54 4 621 407 289 62 12 chr6 4798904 4799065 -144717972 + MLT1A1 LTR MaLR 228 396 -12 4 621 421 266 44 0 chr6 4799128 4799241 -144717796 + B1F1 SINE Alu 32 149 0 4 621 263 307 85 28 chr6 4799500 4799809 -144717228 + L1M2c LINE L1 2095 2433 -4416 4 621 340 323 74 31 chr6 4800005 4800168 -144716869 + L1M2c LINE L1 2823 2992 -3853 4 621 180 0 0 0 chr6 4800705 4800725 -144716312 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 4 621 1033 169 97 5 chr6 4801220 4801416 -144715621 + URR1B DNA MER1_type 1 214 -11 4 621 228 269 0 0 chr6 4801805 4801872 -144715165 + L1Md_F2 LINE L1 5798 5864 -718 4 621 403 292 66 48 chr6 4802079 4802352 -144714685 + L1M2c LINE L1 4919 5196 -1649 4 621 761 275 54 40 chr6 4802450 4802588 -144714449 + L1M2c LINE L1 5650 5781 -1064 4 621 1540 194 95 6 chr6 4802588 4802935 -144714102 - ORR1C1 LTR MaLR 0 378 1 4 621 761 254 88 26 chr6 4802935 4803311 -144713726 + L1M2c LINE L1 5782 6193 -677 4 621 450 312 76 21 chr6 4803311 4803455 -144713582 + B3 SINE B2 1 152 -64 4 621 465 50 0 0 chr6 4803456 4803516 -144713521 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 621 519 300 85 15 chr6 4803545 4803887 -144713150 + L1MA6 LINE L1 5484 5849 -451 4 621 29 47 0 0 chr6 4803917 4803960 -144713077 + AT_rich Low_complexity Low_complexity 1 43 0 4 621 266 238 89 62 chr6 4803983 4804095 -144712942 + L1MA6 LINE L1 5881 5995 -305 4 621 209 125 0 24 chr6 4804126 4804167 -144712870 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 621 1961 153 21 40 chr6 4804171 4804546 -144712491 - Lx LINE L1 -7 6647 6280 4 621 417 123 0 36 chr6 4804572 4804656 -144712381 - RLTR42-int LTR ERVK -3915 1607 1527 4 621 1606 159 64 44 chr6 4805311 4805718 -144711319 + RLTR9F LTR ERVK 1 415 0 4 621 324 315 125 30 chr6 4806045 4806409 -144710628 - L1M2 LINE L1 -1688 4452 4037 4 621 2369 289 68 18 chr6 4806446 4807375 -144709662 - RMER1C Other Other -8 1334 405 4 621 427 280 13 0 chr6 4807475 4807625 -144709412 - L1M2 LINE L1 -2286 3857 3706 4 621 1657 189 19 75 chr6 4807630 4807991 -144709046 - ORR1D1 LTR MaLR 0 374 34 4 621 545 194 34 1 chr6 4808175 4808297 -144708740 + ORR1D1 LTR MaLR 25 157 -237 4 621 243 245 0 0 chr6 4808267 4808320 -144708717 + ORR1D1 LTR MaLR 289 341 -33 4 621 413 302 57 43 chr6 4808375 4808747 -144708290 - L1M2 LINE L1 -2561 3582 3170 4 621 304 313 144 24 chr6 4808838 4809005 -144708032 - L1M2 LINE L1 -1941 4202 4016 4 621 390 21 0 0 chr6 4809366 4809413 -144707624 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 621 494 339 36 5 chr6 4809645 4809838 -144707199 - Lx8 LINE L1 -282 7191 6993 4 621 207 0 0 0 chr6 4809970 4809993 -144707044 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 621 314 286 94 13 chr6 4810040 4810189 -144706848 + L1MD LINE L1 2820 2980 -3166 4 621 705 127 6 87 chr6 4810682 4810740 -144706297 + RLTR42-int LTR ERVK 1870 1921 -3601 4 621 563 27 0 0 chr6 4810740 4810814 -144706223 + L1Md_A LINE L1 6509 6582 0 4 621 705 127 6 87 chr6 4810814 4810927 -144706110 + RLTR42-int LTR ERVK 1922 2027 -3495 4 621 892 89 89 0 chr6 4811001 4811136 -144705901 + B1_Mus2 SINE Alu 1 147 0 4 621 4027 157 48 67 chr6 4812660 4813472 -144703565 + RMER13A LTR ERVK 6 802 -58 4 621 262 172 172 0 chr6 4813868 4813926 -144703111 + RLTR19-int LTR ERVK 3889 3956 -2181 4 621 291 310 16 0 chr6 4814265 4814394 -144702643 + RodERV21-int LTR ERV1 4400 4530 -461 4 621 2534 151 99 22 chr6 4814599 4815095 -144701942 - RMER6A LTR ERVK -121 635 102 4 621 690 162 0 0 chr6 4815182 4815361 -144701676 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 621 486 224 68 12 chr6 4815591 4815754 -144701283 - L1M2 LINE L1 -1312 4831 4660 4 621 295 346 10 10 chr6 4815771 4815873 -144701164 + PB1D10 SINE Alu 1 102 -15 4 621 493 318 76 30 chr6 4815889 4816282 -144700755 - L1M2 LINE L1 -2226 3917 3507 4 621 529 268 77 11 chr6 4816334 4816621 -144700416 - L1M2 LINE L1 -2841 3302 2997 4 621 349 203 0 0 chr6 4816833 4816899 -144700138 - B1_Mur4 SINE Alu -74 74 9 4 621 732 307 32 28 chr6 4816883 4817131 -144699906 - B4A SINE B4 -42 250 2 4 621 274 308 43 32 chr6 4819276 4819370 -144697667 - RSINE1 SINE B4 -57 108 14 4 621 288 0 0 0 chr6 4820017 4820049 -144696988 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 4 621 4128 73 0 16 chr6 4820739 4821295 -144695742 + L1Md_F2 LINE L1 6024 6570 -12 4 621 262 176 29 0 chr6 4821793 4821861 -144695176 - LTR37B LTR ERV1 0 468 399 4 621 484 319 22 7 chr6 4821866 4822002 -144695035 + B1F1 SINE Alu 7 144 -5 5 621 6162 40 5 3 chr6 4822099 4822850 -144694187 + L1Md_A LINE L1 5830 6582 0 5 621 435 247 0 30 chr6 4822873 4822973 -144694064 + PB1D10 SINE Alu 5 101 -16 5 621 209 33 33 0 chr6 4822985 4823015 -144694022 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 5 621 277 336 54 36 chr6 4823185 4823296 -144693741 + PB1 SINE Alu 11 123 -4 5 621 308 311 19 10 chr6 4823316 4823420 -144693617 + G-rich Low_complexity Low_complexity 6 110 0 5 621 334 276 10 48 chr6 4823662 4823765 -144693272 - PB1 SINE Alu -2 125 27 5 621 274 162 90 51 chr6 4823847 4823925 -144693112 + PB1D10 SINE Alu 37 117 0 5 621 337 314 49 28 chr6 4824076 4824220 -144692817 - MLT1B LTR MaLR -49 341 195 5 621 261 0 0 0 chr6 4824418 4824447 -144692590 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 621 283 167 15 15 chr6 4824849 4824916 -144692121 + GA-rich Low_complexity Low_complexity 3 69 0 5 621 221 377 44 37 chr6 4825820 4825955 -144691082 + MIR SINE MIR 20 155 -107 5 621 378 340 84 46 chr6 4826164 4826426 -144690611 + B4A SINE B4 3 274 -18 5 621 212 154 0 49 chr6 4826449 4826490 -144690547 + (CATAT)n Simple_repeat Simple_repeat 2 40 0 5 621 1379 235 133 42 chr6 4826588 4826773 -144690264 - MTD LTR MaLR 0 419 190 5 621 4090 132 143 35 chr6 4826773 4827593 -144689444 - RMER13B LTR ERVK 0 908 1 5 621 1379 235 133 42 chr6 4827593 4827789 -144689248 - MTD LTR MaLR -230 189 3 5 621 321 295 29 102 chr6 4827890 4828151 -144688886 - MER34B-int LTR ERV1 -3248 2108 1870 5 621 257 380 22 7 chr6 4828151 4828289 -144688748 - B1F1 SINE Alu -9 140 1 5 621 321 295 29 102 chr6 4828289 4828408 -144688629 - MER34B-int LTR ERV1 -3487 1869 1756 5 621 408 250 34 60 chr6 4828514 4828663 -144688374 - B1F SINE Alu -4 145 1 5 621 3147 219 16 21 chr6 4828876 4829619 -144687418 + Lx7 LINE L1 6575 7313 -383 5 621 304 229 28 28 chr6 4829619 4829691 -144687346 - RLTR25B LTR ERVK -516 512 441 5 621 724 82 0 0 chr6 4829632 4829729 -144687308 - B1_Mus2 SINE Alu -49 98 2 5 621 1039 84 139 0 chr6 4829741 4829907 -144687130 - B2_Mm2 SINE B2 -6 189 1 5 621 363 306 60 21 chr6 4829907 4830238 -144686799 + Lx7 LINE L1 7347 7690 -6 5 621 1241 254 214 13 chr6 4830276 4830974 -144686063 - RCHARR1 DNA MER1_type -136 838 1 5 621 459 0 0 0 chr6 4831057 4831108 -144685929 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 5 621 588 101 0 0 chr6 4831211 4831300 -144685737 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 5 621 297 75 0 0 chr6 4831657 4831697 -144685340 + (TCC)n Simple_repeat Simple_repeat 3 42 0 5 621 261 283 50 65 chr6 4831699 4831899 -144685138 - MER34-int LTR ERV1 -5586 2621 2425 5 621 355 328 156 23 chr6 4832845 4833101 -144683936 + LTR82B Low_complexity ERVL 102 391 -439 5 621 255 122 0 0 chr6 4833452 4833501 -144683536 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 621 252 0 0 0 chr6 4835045 4835073 -144681964 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 621 330 333 88 7 chr6 4835123 4835271 -144681766 - Lx8 LINE L1 -179 7294 7135 5 621 1738 148 14 66 chr6 4835987 4836334 -144680703 - ORR1C1 LTR MaLR -49 329 1 5 621 897 248 14 9 chr6 4836488 4836700 -144680337 - Lx8 LINE L1 -970 6503 6291 5 621 245 146 21 0 chr6 4836784 4836832 -144680205 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 621 34 42 0 0 chr6 4836853 4836901 -144680136 + AT_rich Low_complexity Low_complexity 1 48 0 5 621 529 335 5 25 chr6 4836902 4837098 -144679939 - B3A SINE B2 -6 192 1 5 621 1270 288 72 12 chr6 4837478 4837981 -144679056 + MT2A LTR ERVL 1 533 0 5 621 545 225 0 0 chr6 4838286 4838397 -144678640 - ID_B1 SINE B4 -8 216 106 5 621 203 304 36 0 chr6 4839147 4839203 -144677834 + L4 LINE RTE 1117 1174 -855 5 621 230 116 23 0 chr6 4839382 4839425 -144677612 + (TCTCC)n Simple_repeat Simple_repeat 5 48 0 5 621 439 300 10 82 chr6 4839899 4840095 -144676942 + ID_B1 SINE B4 2 183 -41 5 621 264 149 0 0 chr6 4840140 4840187 -144676850 + (GGGAGA)n Simple_repeat Simple_repeat 6 52 0 5 621 305 323 147 15 chr6 4840204 4840402 -144676635 - L1MB1 LINE L1 -30 6141 5918 5 621 233 119 24 0 chr6 4840494 4840536 -144676501 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 5 621 194 105 0 26 chr6 4840546 4840585 -144676452 + (CAGG)n Simple_repeat Simple_repeat 2 39 0 5 621 962 284 78 52 chr6 4840619 4841613 -144675424 - L1MB1 LINE L1 -288 5880 4852 5 621 23 54 0 0 chr6 4841745 4841782 -144675255 + AT_rich Low_complexity Low_complexity 1 37 0 5 621 916 238 21 0 chr6 4841782 4841971 -144675066 - B3 SINE B2 -9 207 15 5 621 1004 103 7 0 chr6 4842100 4842245 -144674792 - B1_Mm SINE Alu 0 147 2 5 621 1782 141 62 205 chr6 4842347 4842865 -144674172 - RLTR41 LTR ERV1 -2 444 1 5 621 405 248 9 17 chr6 4845245 4845360 -144671677 + PB1D10 SINE Alu 2 115 -2 5 621 459 266 35 14 chr6 4845971 4846112 -144670925 + B1F1 SINE Alu 4 147 -2 5 621 209 185 37 0 chr6 4846261 4846315 -144670722 + (CAAA)n Simple_repeat Simple_repeat 4 59 0 5 621 388 315 30 15 chr6 4847094 4847226 -144669811 + ID_B1 SINE B4 85 218 -6 5 621 346 287 0 0 chr6 4847890 4847984 -144669053 - PB1D10 SINE Alu -7 110 17 5 621 496 292 0 21 chr6 4848260 4848400 -144668637 - B1F SINE Alu -10 139 3 5 621 378 316 22 0 chr6 4848474 4848613 -144668424 - B1F SINE Alu -3 146 5 5 621 1118 281 59 24 chr6 4848758 4849097 -144667940 - MTEb LTR MaLR -2 377 27 5 621 419 178 0 22 chr6 4849136 4849228 -144667809 + (CATATA)n Simple_repeat Simple_repeat 3 92 0 5 621 244 250 21 74 chr6 4849321 4849416 -144667621 - PB1D10 SINE Alu 0 117 28 5 77 306 275 0 12 chr6 4849663 4849744 -144667293 + MER3 DNA MER1_type 45 124 -85 5 622 577 236 8 16 chr6 4850502 4850631 -144666406 + B3A SINE B2 3 130 -68 5 622 1225 22 0 0 chr6 4850810 4850948 -144666089 - B1_Mm SINE Alu -9 138 1 5 622 396 0 0 0 chr6 4851248 4851292 -144665745 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 622 1140 136 11 37 chr6 4851393 4851584 -144665453 - B2_Mm1t SINE B2 -6 187 2 5 622 748 182 35 0 chr6 4852192 4852335 -144664702 - B1_Mus1 SINE Alu 0 148 1 5 622 191 36 0 35 chr6 4853218 4853247 -144663790 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 5 622 23 33 0 0 chr6 4853254 4853284 -144663753 + GC_rich Low_complexity Low_complexity 1 30 0 5 622 25 0 0 0 chr6 4853317 4853342 -144663695 + GC_rich Low_complexity Low_complexity 1 25 0 5 622 23 78 0 0 chr6 4853452 4853503 -144663534 + GC_rich Low_complexity Low_complexity 1 51 0 5 622 24 53 0 0 chr6 4853951 4853989 -144663048 + GC_rich Low_complexity Low_complexity 1 38 0 5 622 244 0 0 53 chr6 4854108 4854146 -144662891 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 5 622 205 179 0 0 chr6 4854314 4854353 -144662684 + A-rich Low_complexity Low_complexity 2 40 0 5 622 402 74 0 0 chr6 4854965 4855019 -144662018 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 622 324 0 0 0 chr6 4857093 4857129 -144659908 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 622 228 86 0 0 chr6 4859563 4859598 -144657439 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 5 622 376 297 0 0 chr6 4859668 4859769 -144657268 + PB1D10 SINE Alu 6 106 -11 5 622 414 173 0 0 chr6 4860633 4860708 -144656329 - MER5A1 DNA MER1_type -1 165 91 5 622 872 100 0 67 chr6 4861299 4861492 -144655545 + CT-rich Low_complexity Low_complexity 1 180 0 5 622 960 55 0 0 chr6 4861498 4861625 -144655412 - B1_Mm SINE Alu 0 147 21 5 622 447 274 0 34 chr6 4861626 4861743 -144655294 - B1F1 SINE Alu -26 123 11 5 622 637 260 68 34 chr6 4863087 4863351 -144653686 - L1MB7 LINE L1 -18 6166 5890 5 622 349 336 0 42 chr6 4863615 4863758 -144653279 - B1_Mur2 SINE Alu -8 141 4 5 622 35 0 0 0 chr6 4863855 4863890 -144653147 + AT_rich Low_complexity Low_complexity 1 35 0 5 622 1102 57 21 0 chr6 4863900 4864041 -144652996 + B1_Mus2 SINE Alu 2 145 -2 5 622 225 188 0 0 chr6 4864042 4864090 -144652947 + A-rich Low_complexity Low_complexity 1 48 0 5 622 393 283 66 8 chr6 4865403 4865524 -144651513 + ID_B1 SINE B4 94 221 -3 5 622 253 246 0 80 chr6 4865575 4865650 -144651387 + PB1D10 SINE Alu 42 110 -7 5 622 327 85 0 0 chr6 4865653 4865700 -144651337 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 622 280 219 50 118 chr6 4865742 4865793 -144651244 - MTEa LTR MaLR 0 379 326 5 622 1249 34 0 13 chr6 4865793 4865942 -144651095 - B1_Mus1 SINE Alu 0 148 2 5 622 280 219 50 118 chr6 4865942 4866009 -144651028 - MTEa LTR MaLR -54 325 269 5 622 955 249 0 5 chr6 4866436 4866642 -144650395 - B3 SINE B2 -6 210 6 5 622 332 239 108 25 chr6 4866965 4867085 -144649952 + ID_B1 SINE B4 93 222 -2 5 622 341 291 0 37 chr6 4867087 4867194 -144649843 + RSINE1 SINE B4 2 104 -61 5 622 566 235 88 0 chr6 4867362 4867498 -144649539 - RSINE1 SINE B4 -13 152 5 5 622 483 63 0 0 chr6 4867501 4867564 -144649473 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 5 622 214 263 53 0 chr6 4867650 4867707 -144649330 - B1F1 SINE Alu -50 99 40 5 622 941 112 80 43 chr6 4868137 4868324 -144648713 - B2_Mm2 SINE B2 0 195 2 5 622 826 61 0 0 chr6 4869107 4869221 -144647816 - B1_Mus2 SINE Alu 0 147 34 5 622 182 105 0 26 chr6 4869757 4869796 -144647241 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 622 417 70 0 0 chr6 4869921 4869978 -144647059 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 622 256 337 80 45 chr6 4869991 4870190 -144646847 - MLT2D LTR ERVL -45 369 164 6 622 562 240 0 30 chr6 4870224 4870357 -144646680 + ID_B1 SINE B4 89 217 -7 6 622 293 62 0 58 chr6 4870820 4870889 -144646148 + (CAAAAA)n Simple_repeat Simple_repeat 3 67 0 6 622 2264 108 6 58 chr6 4870948 4871293 -144645744 - ORR1A2 LTR MaLR 0 327 1 6 622 323 262 57 19 chr6 4872134 4872239 -144644798 - PB1D10 SINE Alu -6 111 3 6 622 329 241 22 22 chr6 4872154 4872243 -144644794 - ID_B1 SINE B4 -56 168 80 6 622 528 93 0 0 chr6 4872307 4872382 -144644655 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 6 622 248 72 23 23 chr6 4873740 4873773 -144643264 - RLTRETN_Mm LTR ERVK 0 322 289 6 622 357 24 0 0 chr6 4873773 4873815 -144643222 + (CCCTAA)n Simple_repeat Simple_repeat 3 44 0 6 622 1342 6 29 0 chr6 4873831 4874006 -144643031 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 6 622 1351 0 23 11 chr6 4874023 4874199 -144642838 + (CCCTAA)n Simple_repeat Simple_repeat 1 178 0 6 622 325 0 0 0 chr6 4874199 4874239 -144642798 + RLTRETN_Mm LTR ERVK 283 322 0 6 622 1233 27 7 0 chr6 4874803 4874949 -144642088 + B1_Mm SINE Alu 1 147 0 6 622 695 229 155 46 chr6 4875327 4875656 -144641381 + RMER13A LTR ERVK 102 466 -394 6 622 26 30 0 0 chr6 4876743 4876776 -144640261 + AT_rich Low_complexity Low_complexity 1 33 0 6 622 32 26 0 0 chr6 4877407 4877446 -144639591 + AT_rich Low_complexity Low_complexity 1 39 0 6 622 224 294 141 0 chr6 4877483 4877568 -144639469 - RSINE1 SINE B4 -43 122 26 6 622 432 284 95 30 chr6 4877615 4877810 -144639227 - B3A SINE B2 -8 187 1 6 622 306 0 0 0 chr6 4878617 4878651 -144638386 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 622 24 0 0 0 chr6 4878972 4878996 -144638041 + AT_rich Low_complexity Low_complexity 1 24 0 6 622 35 54 0 0 chr6 4879066 4879122 -144637915 + AT_rich Low_complexity Low_complexity 1 56 0 6 622 405 314 44 0 chr6 4880438 4880575 -144636462 - ID_B1 SINE B4 0 224 82 6 622 26 64 0 0 chr6 4881814 4881861 -144635176 + AT_rich Low_complexity Low_complexity 1 47 0 6 622 412 264 129 20 chr6 4881864 4882011 -144635026 - RSINE1 SINE B4 0 165 3 6 622 405 348 28 0 chr6 4882499 4882640 -144634397 - B1F SINE Alu -4 145 1 6 622 331 207 80 11 chr6 4882825 4882913 -144634124 - Ricksha_c DNA MuDR -1143 905 812 6 622 198 304 0 11 chr6 4883471 4883557 -144633480 - MIRb SINE MIR -1 261 179 6 622 410 0 0 20 chr6 4884460 4884511 -144632526 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 622 228 35 0 0 chr6 4884818 4884847 -144632190 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 6 622 447 358 18 23 chr6 4884852 4885072 -144631965 - B4A SINE B4 -68 224 6 6 622 671 276 81 27 chr6 4885639 4885900 -144631137 - B4A SINE B4 -17 275 1 6 622 250 288 0 0 chr6 4886025 4886103 -144630934 + (CGTG)n Simple_repeat Simple_repeat 1 78 0 6 622 291 259 163 16 chr6 4886366 4886544 -144630493 + B3A SINE B2 7 205 -11 6 622 525 32 0 0 chr6 4886690 4886753 -144630284 + (CAG)n Simple_repeat Simple_repeat 3 65 0 6 622 24 0 0 0 chr6 4888197 4888221 -144628816 + AT_rich Low_complexity Low_complexity 1 24 0 6 622 405 0 0 0 chr6 4890494 4890539 -144626498 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 622 464 248 82 9 chr6 4890714 4890824 -144626213 - B1F1 SINE Alu -26 123 6 6 622 838 262 40 0 chr6 4891147 4891349 -144625688 + B3 SINE B2 3 212 -4 6 622 298 202 256 11 chr6 4891906 4891996 -144625041 + ID_B1 SINE B4 87 198 -26 6 622 278 274 43 86 chr6 4891996 4892022 -144625015 + PB1D10 SINE Alu 6 116 -1 6 622 665 279 0 13 chr6 4892329 4892485 -144624552 + ID_B1 SINE B4 70 223 -1 6 622 492 254 64 0 chr6 4893015 4893125 -144623912 - PB1D7 SINE Alu 0 120 4 6 622 180 0 0 0 chr6 4893390 4893410 -144623627 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 622 281 253 0 0 chr6 4893712 4893787 -144623250 - B1F1 SINE Alu -33 116 42 6 622 236 30 0 29 chr6 4893837 4893871 -144623166 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6 622 781 109 15 30 chr6 4893877 4894009 -144623028 - B1_Mus2 SINE Alu -2 145 16 6 622 630 250 0 8 chr6 4895027 4895156 -144621881 + B1F2 SINE Alu 2 129 -20 6 622 951 145 0 70 chr6 4896106 4896262 -144620775 + B1_Mur4 SINE Alu 5 149 -1 6 622 285 212 0 0 chr6 4896263 4896312 -144620725 + A-rich Low_complexity Low_complexity 1 49 0 6 622 1211 54 0 13 chr6 4896312 4896461 -144620576 + B1_Mus2 SINE Alu 1 147 0 6 622 285 212 0 0 chr6 4896461 4896491 -144620546 + A-rich Low_complexity Low_complexity 50 79 0 6 622 1257 40 25 0 chr6 4896496 4896697 -144620340 + (GAAA)n Simple_repeat Simple_repeat 1 206 0 6 622 1493 60 0 21 chr6 4897438 4897626 -144619411 - L1_Mus1 LINE L1 -2 6565 6382 6 622 1665 43 0 0 chr6 4898927 4899113 -144617924 - B2_Mm1a SINE B2 -6 187 2 6 622 727 289 92 30 chr6 4899795 4900195 -144616842 - L1MB7 LINE L1 -124 6060 5636 6 622 972 276 106 32 chr6 4900300 4900648 -144616389 - MTEb LTR MaLR 0 379 6 6 622 333 0 0 0 chr6 4900709 4900746 -144616291 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 6 622 189 318 0 0 chr6 4900763 4900807 -144616230 - L2b LINE L2 -11 3364 3321 6 622 290 301 52 26 chr6 4901593 4901709 -144615328 + PB1D7 SINE Alu 2 120 0 6 622 715 142 8 70 chr6 4901980 4902109 -144614928 + MT2B LTR ERVL 1 121 -412 6 622 769 190 7 0 chr6 4902124 4902261 -144614776 - B1_Mus1 SINE Alu -2 146 9 6 622 955 231 83 86 chr6 4902280 4902630 -144614407 + MT2B LTR ERVL 253 601 0 6 622 447 344 6 43 chr6 4902689 4902853 -144614184 - RSINE1 SINE B4 -6 159 2 6 622 204 40 0 0 chr6 4903667 4903692 -144613345 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 622 681 203 23 0 chr6 4903700 4903828 -144613209 + B1_Mur4 SINE Alu 11 141 -9 6 622 248 0 0 30 chr6 4903828 4903861 -144613176 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 6 622 306 288 116 58 chr6 4903960 4904133 -144612904 - HAL1-3A_ME LINE L1 -417 2441 2259 6 622 333 68 0 0 chr6 4904331 4904375 -144612662 + (A)n Simple_repeat Simple_repeat 1 44 0 6 622 390 85 0 0 chr6 4904830 4904889 -144612148 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 6 622 928 271 5 0 chr6 4905167 4905374 -144611663 + B3 SINE B2 5 212 -4 6 622 517 291 11 78 chr6 4906769 4906948 -144610089 - Tigger16b DNA Tigger -3 334 168 6 622 339 305 8 0 chr6 4907627 4907745 -144609292 + ID_B1 SINE B4 93 211 -13 6 622 365 308 113 35 chr6 4908040 4908269 -144608768 - L2 LINE L2 -778 2641 2395 6 622 220 316 140 25 chr6 4908327 4908570 -144608467 - L2 LINE L2 -1179 2240 1970 6 622 1073 162 90 33 chr6 4908751 4908962 -144608075 - URR1A DNA MER1_type -1 225 3 6 622 210 71 0 0 chr6 4911102 4911130 -144605907 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 622 234 278 0 0 chr6 4911609 4911663 -144605374 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 6 622 21 71 0 0 chr6 4911856 4911898 -144605139 + AT_rich Low_complexity Low_complexity 1 42 0 6 622 259 259 137 12 chr6 4912847 4913015 -144604022 - LTR37A LTR ERV1 -27 399 211 6 622 284 301 49 37 chr6 4914170 4914332 -144602705 - L1MA10 LINE L1 -2 6332 6169 6 622 436 225 244 17 chr6 4914925 4915101 -144601936 - B3 SINE B2 0 216 1 6 622 237 331 57 7 chr6 4915477 4915617 -144601420 - L1MEc LINE L1 -4710 1705 1559 6 622 759 50 0 0 chr6 4915663 4915763 -144601274 + (GA)n Simple_repeat Simple_repeat 1 100 0 6 622 308 282 118 22 chr6 4915791 4916019 -144601018 - L1MEc LINE L1 -4993 1407 1157 6 622 1297 55 0 0 chr6 4916019 4916165 -144600872 - B1_Mus1 SINE Alu -1 147 2 6 622 308 282 118 22 chr6 4916165 4916208 -144600829 - L1MEc LINE L1 -5244 1156 1110 6 622 341 320 40 0 chr6 4916445 4916545 -144600492 - ID_B1 SINE B4 0 224 121 6 622 249 316 85 11 chr6 4916608 4916784 -144600253 - L1MEc LINE L1 -5676 724 536 6 622 236 264 244 46 chr6 4916908 4917146 -144599891 + L1M5 LINE L1 5001 5285 -861 6 622 507 157 0 0 chr6 4917568 4917657 -144599380 + CT-rich Low_complexity Low_complexity 2 90 0 6 622 462 79 0 0 chr6 4917649 4917712 -144599325 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 622 1214 75 0 0 chr6 4917712 4917858 -144599179 - B1_Mus1 SINE Alu 0 148 3 6 622 189 74 0 0 chr6 4918031 4918058 -144598979 + (T)n Simple_repeat Simple_repeat 1 27 0 6 622 1272 54 0 0 chr6 4918058 4918205 -144598832 - B1_Mus1 SINE Alu 0 148 2 6 622 469 254 66 0 chr6 4919525 4919647 -144597390 + RSINE1 SINE B4 3 132 -33 6 622 193 20 35 105 chr6 4921571 4921610 -144595427 + T-rich Low_complexity Low_complexity 19 56 0 6 622 1359 27 0 0 chr6 4921610 4921756 -144595281 - B1_Mm SINE Alu 0 147 2 6 622 193 20 35 105 chr6 4921756 4921773 -144595264 + T-rich Low_complexity Low_complexity 4 18 0 6 622 240 41 19 58 chr6 4922452 4922504 -144594533 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 6 622 996 93 35 35 chr6 4922505 4922649 -144594388 - B1_Mus2 SINE Alu -2 145 2 6 622 189 0 0 0 chr6 4924042 4924063 -144592974 + (C)n Simple_repeat Simple_repeat 1 21 0 6 622 1307 21 7 0 chr6 4924285 4924430 -144592607 - B1_Mus2 SINE Alu 0 147 2 6 622 1334 108 0 36 chr6 4925144 4925337 -144591700 + B2_Mm2 SINE B2 2 187 -8 6 622 230 139 0 0 chr6 4926081 4926117 -144590920 - tRNA-Thr-ACY tRNA tRNA -38 39 4 6 622 330 328 68 8 chr6 4926654 4926786 -144590251 - MER20 DNA MER1_type -57 162 23 6 622 23 33 0 0 chr6 4926944 4926974 -144590063 + AT_rich Low_complexity Low_complexity 1 30 0 6 622 319 283 30 71 chr6 4927049 4927148 -144589889 + B1F1 SINE Alu 2 96 -53 6 622 518 252 65 85 chr6 4927601 4927848 -144589189 - MTE2a LTR MaLR -14 405 164 7 622 345 140 0 0 chr6 4928563 4928620 -144588417 + (TCC)n Simple_repeat Simple_repeat 2 58 0 7 622 285 29 0 0 chr6 4929315 4929349 -144587688 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 622 189 0 0 0 chr6 4929349 4929370 -144587667 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 622 23 33 0 0 chr6 4929407 4929437 -144587600 + AT_rich Low_complexity Low_complexity 1 30 0 7 622 264 21 20 59 chr6 4930500 4930551 -144586486 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7 622 418 282 98 11 chr6 4930903 4931086 -144585951 + L1ME1 LINE L1 5629 5827 -352 7 622 965 276 23 107 chr6 4931250 4931643 -144585394 - MTEa LTR MaLR 0 379 20 7 622 21 0 0 0 chr6 4932334 4932355 -144584682 + AT_rich Low_complexity Low_complexity 1 21 0 7 622 1304 35 0 0 chr6 4934597 4934741 -144582296 - B1_Mus2 SINE Alu -2 145 2 7 622 705 128 0 0 chr6 4935169 4935278 -144581759 + Lx3A LINE L1 5913 6021 -960 7 622 228 300 159 26 chr6 4935378 4935491 -144581546 + Tigger7 DNA MER2_type 182 309 -2182 7 622 4435 155 83 81 chr6 4935516 4936414 -144580623 - RMER19B LTR ERVK 0 902 3 7 622 358 108 31 0 chr6 4936473 4936538 -144580499 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 622 699 277 89 21 chr6 4936576 4936812 -144580225 - MER2 DNA MER2_type -2 343 92 7 622 440 264 149 0 chr6 4936882 4937056 -144579981 + Tigger7 DNA MER2_type 2292 2491 0 7 622 236 108 60 30 chr6 4937470 4937587 -144579450 + (TA)n Simple_repeat Simple_repeat 1 120 0 7 622 1832 197 18 47 chr6 4937730 4938114 -144578923 - ORR1D1 LTR MaLR -1 373 1 7 622 401 217 128 30 chr6 4938257 4938390 -144578647 + B1F SINE Alu 2 147 -2 7 622 230 300 29 0 chr6 4938403 4938473 -144578564 + ID4_ SINE ID 12 83 0 7 622 295 287 0 0 chr6 4939495 4939603 -144577434 - L1M5 LINE L1 -991 5155 5048 7 622 1116 49 20 59 chr6 4940100 4940252 -144576785 + B1_Mus2 SINE Alu 2 147 0 7 622 261 0 0 0 chr6 4940252 4940281 -144576756 + (A)n Simple_repeat Simple_repeat 1 29 0 7 622 675 166 350 0 chr6 4940314 4940471 -144576566 + B3 SINE B2 1 212 -4 7 622 242 180 0 16 chr6 4940508 4940570 -144576467 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 7 622 330 276 23 0 chr6 4940879 4940966 -144576071 - RSINE1 SINE B4 -29 136 48 7 622 341 311 66 15 chr6 4941972 4942109 -144574928 - B1_Mur3 SINE Alu -1 148 5 7 622 234 0 0 0 chr6 4942212 4942238 -144574799 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 622 320 336 22 14 chr6 4942638 4942777 -144574260 - MTEb LTR MaLR 0 379 240 7 622 509 272 0 0 chr6 4942909 4943185 -144573852 + (CA)n Simple_repeat Simple_repeat 1 276 0 7 622 234 282 98 49 chr6 4943273 4943355 -144573682 + 4.5SRNA scRNA scRNA 9 94 0 7 622 293 317 56 45 chr6 4943550 4943748 -144573289 + L1MCa LINE L1 1180 1379 -5129 7 622 342 239 158 25 chr6 4945048 4945168 -144571869 + RSINE1 SINE B4 2 137 -28 7 622 364 225 0 22 chr6 4945256 4945347 -144571690 - PB1D9 SINE Alu -1 119 31 7 622 609 14 0 0 chr6 4947112 4947182 -144569855 + (TTTTC)n Simple_repeat Simple_repeat 4 73 0 7 622 1129 36 0 28 chr6 4947183 4947327 -144569710 - B1_Mus2 SINE Alu -6 141 2 7 622 256 143 24 0 chr6 4947500 4947542 -144569495 - B1F SINE Alu -92 57 15 7 622 896 101 25 12 chr6 4948241 4948401 -144568636 + (TTCC)n Simple_repeat Simple_repeat 3 164 0 7 622 404 226 58 10 chr6 4948401 4948504 -144568533 - PB1D10 SINE Alu -9 108 1 7 622 1215 86 51 6 chr6 4948525 4948700 -144568337 - B2_Mm2 SINE B2 -11 184 2 7 622 567 0 0 0 chr6 4949394 4949457 -144567580 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 7 622 635 275 38 146 chr6 4949479 4950157 -144566880 - L1MC1 LINE L1 0 6333 5729 7 622 574 270 166 63 chr6 4950374 4950448 -144566589 - L1MC1 LINE L1 -752 5394 5314 7 622 270 0 0 0 chr6 4950448 4950478 -144566559 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 622 450 0 0 0 chr6 4950478 4950527 -144566510 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 622 574 270 166 63 chr6 4950527 4951144 -144565893 - L1MC1 LINE L1 -833 5313 4633 7 622 297 0 0 0 chr6 4951881 4951914 -144565123 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 622 21 0 0 0 chr6 4951929 4951950 -144565087 + AT_rich Low_complexity Low_complexity 1 21 0 7 622 6843 211 32 83 chr6 4951974 4952329 -144564708 + Lx LINE L1 4027 4308 -1575 7 622 360 59 0 0 chr6 4952329 4952380 -144564657 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 7 622 7251 188 35 46 chr6 4952380 4952874 -144564163 + Lx LINE L1 4301 4806 -1077 7 622 279 0 0 0 chr6 4952874 4952905 -144564132 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 622 7251 147 43 24 chr6 4952905 4954735 -144562302 + Lx LINE L1 4801 6652 -2 7 622 212 200 56 74 chr6 4956386 4956440 -144560597 + B1F2 SINE Alu 31 83 -66 7 622 180 77 0 0 chr6 4956443 4956469 -144560568 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 7 622 525 99 0 0 chr6 4958643 4958724 -144558313 + (CAAAA)n Simple_repeat Simple_repeat 3 83 0 7 622 236 204 0 0 chr6 4959671 4959720 -144557317 - Lx9 LINE L1 -209 7435 7387 7 622 340 118 0 29 chr6 4959995 4960065 -144556972 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 622 752 184 0 16 chr6 4960118 4960300 -144556737 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 622 21 0 0 0 chr6 4960477 4960498 -144556539 + AT_rich Low_complexity Low_complexity 1 21 0 7 622 341 354 27 34 chr6 4962286 4962549 -144554488 + MER82 DNA MER2_type 71 331 -322 7 622 237 332 59 0 chr6 4963161 4963276 -144553761 - MIR SINE MIR -111 157 34 7 622 183 204 0 0 chr6 4963319 4963363 -144553674 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 622 317 312 117 23 chr6 4963410 4963538 -144553499 - B1F SINE Alu -9 140 1 7 622 289 339 67 6 chr6 4964063 4964241 -144552796 + MLT1B LTR MaLR 37 225 -165 7 622 318 314 88 16 chr6 4964415 4964609 -144552428 + HAL1 LINE L1 1486 1693 -814 7 622 27 29 0 0 chr6 4965569 4965603 -144551434 + AT_rich Low_complexity Low_complexity 1 34 0 7 622 1735 21 0 0 chr6 4965603 4965795 -144551242 - B2_Mm1a SINE B2 0 193 2 7 622 505 292 29 0 chr6 4966376 4966513 -144550524 - RSINE1 SINE B4 -24 141 1 7 622 466 256 243 6 chr6 4967428 4967597 -144549440 + B3 SINE B2 1 209 -7 7 622 22 56 0 0 chr6 4967788 4967824 -144549213 + AT_rich Low_complexity Low_complexity 1 36 0 7 622 219 69 0 0 chr6 4967894 4967923 -144549114 + (A)n Simple_repeat Simple_repeat 1 29 0 7 622 382 258 99 29 chr6 4969437 4969609 -144547428 + L1M4 LINE L1 550 733 -5809 7 622 226 330 0 21 chr6 4969800 4969896 -144547141 - MER34 LTR ERV1 -66 476 383 7 622 6381 140 58 8 chr6 4970684 4971763 -144545274 - Lx4A LINE L1 -16 7042 5910 7 622 753 50 0 0 chr6 4971763 4971862 -144545175 - B1_Mm SINE Alu -6 141 43 7 622 1055 157 319 18 chr6 4971842 4972108 -144544929 - RMER6A LTR ERVK -409 347 2 7 622 717 226 101 20 chr6 4972357 4972556 -144544481 + B3 SINE B2 1 215 -1 7 622 798 280 88 48 chr6 4972674 4973004 -144544033 - ORR1E LTR MaLR -11 348 6 7 622 332 267 193 35 chr6 4974096 4974267 -144542770 - MIR3 SINE MIR -7 201 4 7 622 195 42 0 0 chr6 4975615 4975639 -144541398 + (TC)n Simple_repeat Simple_repeat 2 25 0 7 622 970 24 0 0 chr6 4975671 4975797 -144541240 - B1_Mus2 SINE Alu -21 126 1 7 622 330 276 114 0 chr6 4975917 4976022 -144541015 - PB1D10 SINE Alu 0 117 1 7 622 286 193 36 12 chr6 4976316 4976400 -144540637 - B1_Mur3 SINE Alu 0 149 64 7 622 1382 220 82 35 chr6 4976647 4977014 -144540023 - ORR1C2 LTR MaLR 0 384 1 7 77 1304 94 0 27 chr6 4980664 4980849 -144536188 - B2_Mm2 SINE B2 -14 181 2 7 623 640 102 3 2 chr6 4981169 4981281 -144535756 + B1_Mus1 SINE Alu 1 113 -7 7 623 189 0 0 0 chr6 4981282 4981303 -144535734 + (CAA)n Simple_repeat Simple_repeat 1 21 0 7 623 492 58 0 0 chr6 4981344 4981413 -144535624 + L1_Mus2 LINE L1 6498 6566 0 7 623 460 0 33 0 chr6 4981438 4981498 -144535539 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 623 263 203 16 0 chr6 4981634 4981698 -144535339 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 623 212 111 22 0 chr6 4981747 4981792 -144535245 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 7 623 1231 48 0 0 chr6 4981794 4981940 -144535097 - B1_Mus1 SINE Alu -2 146 1 7 623 355 326 20 29 chr6 4982202 4982379 -144534658 - MLT2C1 LTR ERVL -265 199 28 7 623 395 98 33 0 chr6 4982870 4982931 -144534106 + MT2B2 LTR ERVL 244 306 -278 7 623 3247 117 20 27 chr6 4982959 4983511 -144533526 - MT2B2 LTR ERVL 0 584 37 7 623 207 88 0 29 chr6 4983958 4983993 -144533044 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 7 623 22 0 0 0 chr6 4984052 4984074 -144532963 + AT_rich Low_complexity Low_complexity 1 22 0 7 623 217 132 0 0 chr6 4984146 4984184 -144532853 + (A)n Simple_repeat Simple_repeat 1 38 0 7 623 387 0 0 0 chr6 4984220 4984263 -144532774 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 7 623 1068 81 0 0 chr6 4984263 4984399 -144532638 - B1_Mus1 SINE Alu -12 136 1 7 623 230 329 68 86 chr6 4984591 4984754 -144532283 + RSINE1 SINE B4 5 164 -1 7 623 625 213 37 0 chr6 4984788 4984924 -144532113 - B1_Mur1 SINE Alu -7 142 2 7 623 286 233 76 25 chr6 4987669 4987788 -144529249 + MLT2D LTR ERVL 33 157 -307 7 623 399 41 0 0 chr6 4987844 4987893 -144529144 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 7 623 2832 47 16 8 chr6 4987893 4988281 -144528756 - MTA_Mm LTR MaLR -5 391 1 7 623 239 309 23 23 chr6 4988345 4988431 -144528606 + LTR82B Low_complexity ERVL 115 200 -630 8 623 1193 119 0 56 chr6 4988835 4989030 -144528007 - B2_Mm2 SINE B2 -9 186 3 8 623 235 280 18 91 chr6 4990384 4990494 -144526543 - L1M5 LINE L1 -377 5787 5686 8 623 306 0 0 0 chr6 4990531 4990565 -144526472 + (TA)n Simple_repeat Simple_repeat 2 35 0 8 623 366 23 0 0 chr6 4990590 4990633 -144526404 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 623 350 308 33 16 chr6 4990749 4990871 -144526166 - B1F SINE Alu -21 128 5 8 623 26 0 0 0 chr6 4990964 4990990 -144526047 + AT_rich Low_complexity Low_complexity 1 26 0 8 623 1101 58 43 0 chr6 4990990 4991129 -144525908 - B1_Mus1 SINE Alu 0 148 4 8 623 242 295 94 9 chr6 4991308 4991414 -144525623 - PB1D9 SINE Alu -5 115 1 8 623 225 240 105 13 chr6 4991433 4991509 -144525528 - ID2 SINE ID 0 83 1 8 623 1516 58 16 0 chr6 4991843 4992032 -144525005 - B2_Mm2 SINE B2 -2 193 2 8 623 250 278 97 65 chr6 4992032 4992186 -144524851 + MER2 DNA MER2_type 165 323 -22 8 623 1187 75 6 28 chr6 4992866 4993045 -144523992 - L1_Mus2 LINE L1 0 6566 6392 8 623 184 179 14 29 chr6 4993631 4993700 -144523337 + (TCTCTG)n Simple_repeat Simple_repeat 6 73 0 8 623 457 219 200 30 chr6 4993832 4993997 -144523040 + B3A SINE B2 3 195 -3 8 623 525 264 127 26 chr6 4995498 4995727 -144521310 + B4A SINE B4 41 292 0 8 623 375 164 0 0 chr6 4996309 4996376 -144520661 + MTC LTR MaLR 2 68 -353 8 623 760 131 229 0 chr6 4996378 4996531 -144520506 - MTC LTR MaLR -119 302 115 8 623 427 211 156 0 chr6 4996538 4996647 -144520390 + MTC LTR MaLR 296 421 0 8 623 334 228 109 0 chr6 4996646 4996738 -144520299 + MTC-int LTR MaLR 2 103 -1155 8 623 606 63 0 0 chr6 4996756 4996835 -144520202 + (TG)n Simple_repeat Simple_repeat 2 80 0 8 623 23 0 0 0 chr6 4998440 4998463 -144518574 + AT_rich Low_complexity Low_complexity 1 23 0 8 623 1136 71 0 7 chr6 4999508 4999650 -144517387 + B1_Mus1 SINE Alu 2 142 -6 8 623 333 0 0 0 chr6 4999652 4999689 -144517348 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 623 262 171 14 14 chr6 5000020 5000091 -144516946 + CT-rich Low_complexity Low_complexity 2 72 0 1 623 197 0 71 0 chr6 5000249 5000277 -144516760 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 623 1258 111 47 0 chr6 5001028 5001200 -144515837 + B2_Mm2 SINE B2 1 180 -15 3 623 615 27 0 0 chr6 5001200 5001273 -144515764 + (GGAAA)n Simple_repeat Simple_repeat 4 76 0 4 623 1754 32 0 0 chr6 5002004 5002194 -144514843 + B2_Mm1t SINE B2 1 190 -3 5 623 1245 55 0 0 chr6 5002812 5002958 -144514079 - B1_Mus2 SINE Alu 0 147 2 6 623 711 103 0 0 chr6 5003051 5003148 -144513889 + B2_Mm2 SINE B2 3 99 -96 7 623 184 50 48 48 chr6 5003153 5003195 -144513842 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 8 623 1284 80 24 101 chr6 5003195 5003403 -144513634 - B2_Mm1t SINE B2 0 193 2 9 623 479 122 121 11 chr6 5003430 5003521 -144513516 + B2_Mm2 SINE B2 86 186 -9 7 623 29 34 0 48 chr6 5003590 5003652 -144513385 + AT_rich Low_complexity Low_complexity 1 59 0 1 623 422 295 6 76 chr6 5003667 5003825 -144513212 + B1F SINE Alu 2 148 -1 1 623 399 200 0 28 chr6 5004874 5004946 -144512091 - RSINE1 SINE B4 -28 137 68 1 623 1707 43 0 0 chr6 5005554 5005742 -144511295 - B2_Mm1t SINE B2 -5 188 1 1 623 272 254 45 0 chr6 5006694 5006761 -144510276 + L1M5 LINE L1 5757 5826 -298 1 623 198 192 0 0 chr6 5006869 5006921 -144510116 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 623 279 0 0 0 chr6 5007668 5007699 -144509338 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 623 994 159 7 0 chr6 5008549 5008694 -144508343 + B1_Mus2 SINE Alu 1 146 -1 1 623 192 111 0 53 chr6 5008696 5008753 -144508284 + A-rich Low_complexity Low_complexity 3 56 0 1 623 276 30 0 0 chr6 5009595 5009628 -144507409 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 623 343 288 234 14 chr6 5010081 5010222 -144506815 - B3 SINE B2 -43 173 2 2 623 198 0 0 0 chr6 5010235 5010257 -144506780 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2 623 1191 56 28 0 chr6 5010279 5010423 -144506614 - B1_Mus1 SINE Alu 0 148 1 2 623 306 221 114 25 chr6 5011842 5011921 -144505116 - PB1 SINE Alu -8 119 34 2 623 439 289 138 12 chr6 5012236 5012576 -144504461 + L1MC LINE L1 4242 4624 -1522 2 623 440 262 524 22 chr6 5012577 5012823 -144504214 - ORR1D2 LTR MaLR 0 370 4 2 623 468 285 98 6 chr6 5012851 5012984 -144504053 + L1MC LINE L1 4648 4796 -1350 2 623 509 110 11 0 chr6 5012984 5013075 -144503962 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 2 623 468 285 98 6 chr6 5013075 5013114 -144503923 + L1MC LINE L1 4797 4835 -1311 2 623 2019 60 36 0 chr6 5013259 5013510 -144503527 + L1_Mus1 LINE L1 6307 6566 -1 2 623 347 288 12 0 chr6 5013725 5013805 -144503232 - B4 SINE B4 -209 83 3 2 623 37667 30 1 7 chr6 5014780 5019963 -144497074 + L1Md_A LINE L1 440 5586 -297 2 623 8999 34 0 0 chr6 5019963 5020959 -144496078 + L1Md_A LINE L1 5587 6582 0 2 623 1965 135 47 31 chr6 5020959 5021319 -144495718 + ORR1C1 LTR MaLR 13 378 0 3 623 1296 34 7 0 chr6 5023242 5023388 -144493649 + B1_Mus2 SINE Alu 1 147 0 3 623 823 212 0 14 chr6 5023415 5023563 -144493474 + B1_Mur1 SINE Alu 3 148 -1 3 623 689 266 56 60 chr6 5023586 5023769 -144493268 + B3 SINE B2 2 180 -36 3 623 558 0 0 0 chr6 5023769 5023831 -144493206 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 3 623 246 81 0 0 chr6 5023836 5023873 -144493164 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 623 689 266 56 60 chr6 5023873 5023899 -144493138 + B3 SINE B2 184 216 0 3 623 2395 152 34 8 chr6 5024217 5024601 -144492436 + ORR1B1 LTR MaLR 1 394 0 3 623 395 319 104 34 chr6 5024814 5025290 -144491747 + L1M3 LINE L1 4478 5013 -1127 3 623 313 332 94 31 chr6 5025905 5026129 -144490908 + L1M3 LINE L1 5491 5728 -451 3 623 203 103 26 0 chr6 5026934 5026973 -144490064 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 3 623 208 135 0 0 chr6 5027070 5027107 -144489930 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 3 623 279 0 0 0 chr6 5027107 5027138 -144489899 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 623 186 71 0 0 chr6 5027952 5027980 -144489057 + (T)n Simple_repeat Simple_repeat 1 28 0 4 623 429 241 16 57 chr6 5028719 5028842 -144488195 - PB1D7 SINE Alu -1 119 2 4 623 944 161 0 11 chr6 5029627 5029809 -144487228 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 4 623 354 45 0 0 chr6 5029831 5029875 -144487162 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 623 953 121 6 0 chr6 5031809 5031974 -144485063 + (TTCTC)n Simple_repeat Simple_repeat 2 167 0 4 623 1894 277 192 26 chr6 5034332 5035501 -144481536 - L1M2 LINE L1 -815 5328 3965 4 623 331 250 223 61 chr6 5035538 5035785 -144481252 + Lx8 LINE L1 7180 7466 -7 4 623 1046 108 22 0 chr6 5035824 5035963 -144481074 - B1_Mus1 SINE Alu -5 143 2 4 623 21 36 0 0 chr6 5036602 5036630 -144480407 + AT_rich Low_complexity Low_complexity 1 28 0 4 623 219 300 0 28 chr6 5037369 5037441 -144479596 + GA-rich Low_complexity Low_complexity 1 70 0 5 623 228 281 146 23 chr6 5037748 5037919 -144479118 + L1M5 LINE L1 4111 4302 -1844 5 623 231 333 0 11 chr6 5038861 5038949 -144478088 + L1M5 LINE L1 5504 5590 -650 5 623 180 0 0 0 chr6 5039578 5039598 -144477439 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 623 397 301 10 0 chr6 5039618 5039721 -144477316 - B1F SINE Alu -44 105 2 5 623 219 36 0 0 chr6 5040621 5040649 -144476388 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 623 315 0 0 0 chr6 5041734 5041769 -144475268 + (A)n Simple_repeat Simple_repeat 1 35 0 5 623 387 0 0 0 chr6 5042300 5042343 -144474694 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 623 247 271 161 97 chr6 5042642 5042797 -144474240 + LTR40a LTR ERVL 2 166 -353 5 623 685 21 151 0 chr6 5042816 5042909 -144474128 + B1_Mus2 SINE Alu 41 147 0 5 623 388 259 281 55 chr6 5042955 5043415 -144473622 - MLT1F2-int LTR MaLR -912 577 14 5 623 851 275 140 101 chr6 5043452 5043938 -144473099 - MLT1F2 LTR MaLR -35 525 21 5 623 293 333 88 62 chr6 5044249 5044441 -144472596 + B3A SINE B2 2 198 0 6 623 283 305 197 30 chr6 5045615 5045818 -144471219 - L2c LINE L2 -1 3386 3138 6 623 685 246 34 62 chr6 5048329 5048537 -144468500 + RMER30 DNA MER1_type 1 202 0 6 623 767 293 0 0 chr6 5049936 5050093 -144466944 + RSINE1 SINE B4 4 160 -5 6 623 399 56 0 0 chr6 5051280 5051334 -144465703 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 623 390 246 143 60 chr6 5051884 5052066 -144464971 - Lx8 LINE L1 -372 7101 6905 6 623 1171 42 19 77 chr6 5053284 5053439 -144463598 - B1_Mus1 SINE Alu 0 148 3 6 623 1694 52 0 0 chr6 5054623 5054815 -144462222 - B2_Mm1t SINE B2 0 193 2 6 623 224 77 26 0 chr6 5055698 5055737 -144461300 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 623 440 337 6 11 chr6 5057141 5057315 -144459722 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 6 623 222 62 0 0 chr6 5057538 5057570 -144459467 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 7 623 3672 57 2 15 chr6 5057604 5058070 -144458967 - L1Md_F2 LINE L1 -14 6568 6109 7 623 291 250 23 35 chr6 5058076 5058163 -144458874 - B4A SINE B4 -204 88 3 7 623 233 118 0 19 chr6 5058215 5058267 -144458770 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 623 414 57 0 0 chr6 5059249 5059302 -144457735 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 623 21 0 0 0 chr6 5061286 5061307 -144455730 + AT_rich Low_complexity Low_complexity 1 21 0 7 623 24 32 0 0 chr6 5061576 5061607 -144455430 + AT_rich Low_complexity Low_complexity 1 31 0 7 623 218 209 70 0 chr6 5061850 5061936 -144455101 + (AGTTG)n Simple_repeat Simple_repeat 2 93 0 7 623 238 304 110 24 chr6 5063331 5063497 -144453540 + MIRc SINE MIR 16 201 -67 7 623 589 291 29 106 chr6 5066263 5066574 -144450463 + B4A SINE B4 2 288 -4 7 623 756 132 28 28 chr6 5068129 5068309 -144448728 + G-rich Low_complexity Low_complexity 1 180 0 8 623 423 226 0 122 chr6 5068562 5068693 -144448344 + B1_Mur1 SINE Alu 12 126 -23 8 623 333 102 0 0 chr6 5068694 5068753 -144448284 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 8 623 720 284 49 25 chr6 5069577 5069862 -144447175 + B4A SINE B4 1 292 0 8 623 208 184 61 0 chr6 5071046 5071095 -144445942 + A-rich Low_complexity Low_complexity 3 54 0 8 623 2645 40 0 15 chr6 5071849 5072182 -144444855 + L1Md_F2 LINE L1 6255 6582 0 8 623 214 322 35 0 chr6 5072414 5072501 -144444536 + ID_B1 SINE B4 79 168 -56 8 623 268 296 17 100 chr6 5072423 5072543 -144444494 + PB1D10 SINE Alu 7 116 -1 8 623 296 155 14 0 chr6 5073399 5073470 -144443567 + (CA)n Simple_repeat Simple_repeat 1 72 0 8 623 6274 108 16 7 chr6 5073515 5074517 -144442520 - Lx3C LINE L1 -1030 5946 4938 8 623 1648 124 33 19 chr6 5074517 5074788 -144442249 + Lx3B LINE L1 6696 6970 -3 9 623 528 45 0 0 chr6 5074836 5074903 -144442134 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 9 623 3370 100 12 4 chr6 5074903 5075384 -144441653 + L1_Mus4 LINE L1 6137 6621 -15 9 623 549 44 0 0 chr6 5075384 5075452 -144441585 + (GA)n Simple_repeat Simple_repeat 2 69 0 9 623 3562 18 2 0 chr6 5075735 5076130 -144440907 + MTA_Mm LTR MaLR 1 396 0 9 623 408 271 28 0 chr6 5076222 5076329 -144440708 + RSINE1 SINE B4 47 156 -9 9 623 185 239 13 53 chr6 5076634 5076709 -144440328 + L3 LINE CR1 842 913 -3576 9 623 198 0 0 0 chr6 5077794 5077816 -144439221 + (A)n Simple_repeat Simple_repeat 1 22 0 9 623 215 220 65 48 chr6 5078061 5078123 -144438914 - PB1D9 SINE Alu -39 81 19 9 623 252 0 0 0 chr6 5078712 5078740 -144438297 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 9 623 331 319 44 59 chr6 5079408 5079611 -144437426 - MIR SINE MIR -20 248 49 1 623 277 334 0 23 chr6 5082872 5082991 -144434046 - B1F1 SINE Alu -6 111 1 1 623 498 290 82 0 chr6 5083100 5083283 -144433754 - B3 SINE B2 -12 204 7 1 623 468 0 0 0 chr6 5083580 5083632 -144433405 + (T)n Simple_repeat Simple_repeat 1 52 0 1 623 532 248 8 0 chr6 5085565 5085682 -144431355 - B3 SINE B2 -85 131 14 1 623 706 236 58 36 chr6 5086155 5086379 -144430658 + B4A SINE B4 42 270 -22 1 623 570 54 0 0 chr6 5086379 5086453 -144430584 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 623 278 320 13 0 chr6 5087739 5087817 -144429220 - ID4 SINE ID -4 79 1 1 623 457 282 31 37 chr6 5088285 5088447 -144428590 - MTD LTR MaLR -38 381 221 1 623 230 213 16 16 chr6 5090103 5090165 -144426872 + A-rich Low_complexity Low_complexity 5 66 0 1 623 198 336 93 9 chr6 5094141 5094249 -144422788 + MIRb SINE MIR 95 211 -57 1 623 21 0 0 0 chr6 5095324 5095345 -144421692 + AT_rich Low_complexity Low_complexity 1 21 0 1 623 213 182 0 0 chr6 5096236 5096291 -144420746 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 1 623 255 288 93 12 chr6 5096499 5096671 -144420366 + MER33 DNA MER1_type 72 257 -67 1 623 186 43 0 0 chr6 5096671 5096694 -144420343 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1 623 1152 81 0 0 chr6 5096696 5096844 -144420193 - B1_Mus1 SINE Alu 0 148 1 1 623 242 163 0 0 chr6 5097232 5097275 -144419762 + MIR SINE MIR 103 145 -117 1 623 254 288 58 25 chr6 5097499 5097620 -144419417 - L4 LINE RTE -623 1406 1282 1 623 837 0 0 0 chr6 5098605 5098698 -144418339 + (TATATG)n Simple_repeat Simple_repeat 6 98 0 1 623 666 234 114 20 chr6 5098735 5098936 -144418101 + ID_B1 SINE B4 5 224 0 1 623 252 276 66 0 chr6 5099035 5099111 -144417926 + PB1D10 SINE Alu 16 96 -21 1 623 33 25 0 0 chr6 5099244 5099284 -144417753 + AT_rich Low_complexity Low_complexity 1 40 0 1 623 283 231 121 0 chr6 5099312 5099403 -144417634 + B4A SINE B4 2 103 -189 1 623 263 344 0 30 chr6 5099458 5099557 -144417480 + B4A SINE B4 197 292 0 1 623 381 43 0 0 chr6 5099577 5099624 -144417413 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 1 623 811 92 2 23 chr6 5099897 5100024 -144417013 - B1_Mus2 SINE Alu 0 147 21 1 623 504 0 0 0 chr6 5100372 5100428 -144416609 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 623 270 141 42 14 chr6 5100896 5100968 -144416069 + GA-rich Low_complexity Low_complexity 2 75 0 1 623 180 354 52 30 chr6 5101062 5101196 -144415841 - L4 LINE RTE -1806 223 87 1 623 510 352 19 7 chr6 5108876 5109145 -144407892 + MamRep605 Unknown Unknown 345 616 -260 1 624 465 66 0 0 chr6 5113996 5114057 -144402980 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 624 183 42 0 0 chr6 5114159 5114183 -144402854 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 1 624 222 37 0 0 chr6 5115010 5115037 -144402000 + (A)n Simple_repeat Simple_repeat 1 27 0 1 624 180 176 0 0 chr6 5115675 5115709 -144401328 + T-rich Low_complexity Low_complexity 1 34 0 1 624 280 306 51 51 chr6 5116616 5116733 -144400304 - PB1D10 SINE Alu 0 117 1 1 624 445 16 32 0 chr6 5117057 5117119 -144399918 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 1 624 285 307 127 25 chr6 5117882 5118039 -144398998 - ORR1E LTR MaLR -169 190 18 1 624 450 0 0 0 chr6 5119465 5119515 -144397522 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 624 186 43 0 0 chr6 5119515 5119537 -144397500 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1 624 350 302 0 40 chr6 5119683 5119807 -144397230 + RSINE1 SINE B4 41 159 -6 1 624 306 0 0 0 chr6 5120124 5120158 -144396879 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 624 287 222 100 0 chr6 5120188 5120278 -144396759 + MER2 DNA MER2_type 115 213 -132 1 624 654 315 65 32 chr6 5120291 5120570 -144396467 + B4A SINE B4 5 292 0 1 624 279 339 37 30 chr6 5120603 5120737 -144396300 + MER2 DNA MER2_type 211 345 0 1 624 1055 63 0 0 chr6 5120877 5121020 -144396017 - B1_Mus1 SINE Alu 0 148 6 1 624 270 0 0 0 chr6 5121441 5121471 -144395566 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 624 260 0 57 0 chr6 5123227 5123262 -144393775 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 1 624 229 256 62 37 chr6 5123351 5123432 -144393605 + B4 SINE B4 4 86 -206 1 624 203 61 0 29 chr6 5123455 5123489 -144393548 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 624 296 326 14 28 chr6 5123618 5123760 -144393277 - L1MB4 LINE L1 -47 6136 5997 1 624 392 312 0 0 chr6 5123837 5123933 -144393104 - PB1D10 SINE Alu -21 96 1 1 624 623 175 146 7 chr6 5123933 5124077 -144392960 - L1MB4 LINE L1 -244 5936 5773 1 624 757 131 12 0 chr6 5125265 5125366 -144391671 + (GA)n Simple_repeat Simple_repeat 2 103 0 1 624 225 0 0 0 chr6 5125366 5125391 -144391646 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 624 757 131 12 0 chr6 5125391 5125449 -144391588 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 624 229 271 0 0 chr6 5126516 5126564 -144390473 - Charlie10a DNA MER1_type -3 277 230 1 624 1172 215 148 9 chr6 5126632 5126956 -144390081 + ORR1D1 LTR MaLR 4 372 -2 1 624 1232 61 8 8 chr6 5127639 5127888 -144389149 + (TG)n Simple_repeat Simple_repeat 1 249 0 1 624 181 121 30 0 chr6 5128396 5128429 -144388608 + MIR SINE MIR 112 145 -63 1 624 491 246 17 42 chr6 5129572 5129691 -144387346 - ID_B1 SINE B4 -108 116 1 1 624 749 255 0 151 chr6 5130138 5130409 -144386628 + RLTR11B LTR ERVK 1 238 -215 1 624 1241 74 17 0 chr6 5130409 5130585 -144386452 + (GGAGAA)n Simple_repeat Simple_repeat 1 179 0 1 624 735 44 0 0 chr6 5130586 5130677 -144386360 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 1 624 749 255 0 151 chr6 5130677 5130740 -144386297 + RLTR11B LTR ERVK 239 286 -167 1 624 482 113 15 46 chr6 5132067 5132197 -144384840 + (CAGAGA)n Simple_repeat Simple_repeat 1 126 0 1 624 351 315 62 0 chr6 5132438 5132568 -144384469 - L2a LINE L2 -263 3163 3026 1 624 315 0 0 0 chr6 5132787 5132822 -144384215 + (A)n Simple_repeat Simple_repeat 1 35 0 1 624 387 202 0 0 chr6 5133725 5133809 -144383228 + GA-rich Low_complexity Low_complexity 4 87 0 1 624 1596 149 41 28 chr6 5134334 5134651 -144382386 + ORR1A4 LTR MaLR 1 321 -8 1 624 23 0 0 0 chr6 5134721 5134744 -144382293 + AT_rich Low_complexity Low_complexity 1 23 0 1 624 230 295 177 9 chr6 5135545 5135658 -144381379 - ID_B1 SINE B4 -1 223 92 1 624 274 250 41 61 chr6 5136487 5136585 -144380452 + MLT1L LTR MaLR 216 311 -299 1 624 549 135 0 0 chr6 5138577 5138666 -144378371 + (CAG)n Simple_repeat Simple_repeat 1 89 0 1 624 609 102 0 0 chr6 5139989 5140097 -144376940 + (TC)n Simple_repeat Simple_repeat 2 109 0 1 624 198 0 0 0 chr6 5140097 5140119 -144376918 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 624 21 57 0 0 chr6 5142141 5142176 -144374861 + AT_rich Low_complexity Low_complexity 1 35 0 1 624 644 263 28 6 chr6 5142263 5142439 -144374598 + B4A SINE B4 74 253 -39 1 624 324 0 0 0 chr6 5142497 5142533 -144374504 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 624 951 104 0 0 chr6 5143211 5143375 -144373662 + (CA)n Simple_repeat Simple_repeat 2 165 0 1 624 314 186 247 0 chr6 5144349 5144446 -144372591 - L2a LINE L2 -20 3406 3286 1 624 374 336 19 32 chr6 5144458 5144612 -144372425 + RSINE1 SINE B4 2 153 -12 1 624 507 17 0 0 chr6 5144619 5144679 -144372358 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 624 363 44 0 0 chr6 5144679 5144724 -144372313 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 624 183 28 54 27 chr6 5145557 5145594 -144371443 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 624 310 150 78 39 chr6 5145598 5145814 -144371223 + (GTGTG)n Simple_repeat Simple_repeat 1 224 0 1 624 297 141 5 114 chr6 5145712 5145913 -144371124 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 1 624 270 165 90 12 chr6 5145863 5146029 -144371008 + (GTGTG)n Simple_repeat Simple_repeat 1 179 0 1 624 669 216 0 0 chr6 5146251 5146504 -144370533 + (TG)n Simple_repeat Simple_repeat 1 253 0 1 624 459 65 0 89 chr6 5146604 5146739 -144370298 + GA-rich Low_complexity Low_complexity 5 127 0 1 624 576 0 0 0 chr6 5146883 5146947 -144370090 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 624 357 274 137 0 chr6 5146952 5147054 -144369983 - RSINE1 SINE B4 -33 132 17 1 624 368 299 65 0 chr6 5147317 5147424 -144369613 + B4 SINE B4 175 288 -4 1 624 2853 286 71 55 chr6 5147567 5148713 -144368324 + Lx8 LINE L1 6304 7467 -6 1 624 319 304 0 35 chr6 5148820 5148936 -144368101 + RMER15 LTR ERVL 303 414 -161 1 624 360 337 42 88 chr6 5148965 5149180 -144367857 - MLT1F2 LTR MaLR -48 512 308 1 624 213 364 129 24 chr6 5149550 5149798 -144367239 + L2 LINE L2 2807 3080 -339 1 624 3949 153 112 130 chr6 5150726 5151876 -144365161 - L1_Mur3 LINE L1 -345 5817 4647 1 624 27 0 0 0 chr6 5151882 5151909 -144365128 + AT_rich Low_complexity Low_complexity 1 27 0 1 624 7094 60 64 3 chr6 5151915 5153034 -144364003 - L1_Mus2 LINE L1 0 6566 5377 1 624 2990 155 101 10 chr6 5153028 5153640 -144363397 - L1_Mur3 LINE L1 -1892 3988 3321 1 624 1126 80 0 0 chr6 5153702 5153840 -144363197 - B1_Mus1 SINE Alu -10 138 1 1 624 407 169 0 24 chr6 5153871 5153956 -144363081 - L1_Mur3 LINE L1 -2564 3316 3234 1 624 2565 119 47 43 chr6 5153965 5154431 -144362606 + MT2B LTR ERVL 120 587 -14 1 624 374 285 101 57 chr6 5154442 5154669 -144362368 - B4A SINE B4 -52 240 4 1 624 648 327 76 44 chr6 5154703 5155138 -144361899 + L1M5 LINE L1 3518 3966 -2180 1 624 229 388 0 112 chr6 5155993 5156109 -144360928 + PB1D9 SINE Alu 1 103 -17 2 624 243 219 15 59 chr6 5157303 5157371 -144359666 - ID4 SINE ID -5 78 14 2 624 287 353 58 5 chr6 5158109 5158317 -144358720 - L1M5 LINE L1 -644 5550 5332 2 624 24 0 0 0 chr6 5159389 5159413 -144357624 + AT_rich Low_complexity Low_complexity 1 24 0 2 624 306 0 0 0 chr6 5160022 5160056 -144356981 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 624 522 67 0 0 chr6 5160056 5160130 -144356907 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 624 637 181 40 46 chr6 5160149 5160300 -144356737 - B1_Mur4 SINE Alu 0 150 1 2 624 252 217 0 0 chr6 5160478 5160524 -144356513 - ID4_ SINE ID -36 47 2 2 624 2079 101 39 60 chr6 5160555 5160891 -144356146 - ORR1A4 LTR MaLR 0 329 1 2 624 310 315 26 26 chr6 5161908 5162061 -144354976 + MLT1J-int LTR MaLR 628 780 -607 2 624 2328 117 3 0 chr6 5162630 5162955 -144354082 + ORR1A2 LTR MaLR 1 326 -1 2 624 2083 143 32 12 chr6 5163128 5163532 -144353505 + RMER17D LTR ERVK 155 566 -323 2 624 3258 75 93 4 chr6 5163532 5163984 -144353053 - L1Md_F2 LINE L1 0 6582 6091 2 624 2858 73 0 3 chr6 5163984 5164354 -144352683 + L1Md_F2 LINE L1 5717 6085 -497 2 624 2049 118 15 6 chr6 5164354 5164688 -144352349 + RMER17D LTR ERVK 551 887 -2 2 624 2272 158 13 16 chr6 5164693 5165079 -144351958 + Lx5 LINE L1 6666 7050 0 2 624 248 342 66 8 chr6 5165534 5165655 -144351382 - MLT1F LTR MaLR -367 181 54 2 624 244 380 60 0 chr6 5165884 5165984 -144351053 - PB1D9 SINE Alu -9 111 6 2 624 507 348 0 6 chr6 5166503 5166665 -144350372 + B3A SINE B2 13 173 -25 2 624 6848 82 7 0 chr6 5166696 5167583 -144349454 - RLTR13B1 LTR ERVK 0 893 1 2 624 441 0 0 0 chr6 5167732 5167781 -144349256 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 2 624 2167 66 7 0 chr6 5168090 5168394 -144348643 - ORR1A2 LTR MaLR -8 319 14 2 624 660 264 50 53 chr6 5168678 5168978 -144348059 - L1MA6 LINE L1 -49 6251 5953 2 624 776 312 50 64 chr6 5169427 5169708 -144347329 - B4 SINE B4 -4 288 12 2 624 1446 158 8 0 chr6 5169966 5170220 -144346817 + RLTR28 LTR ERVL 1 256 -268 2 624 694 174 0 64 chr6 5170221 5170362 -144346675 + B1_Mur3 SINE Alu 7 138 -11 2 624 515 190 8 17 chr6 5170383 5170501 -144346536 + RLTR28 LTR ERVL 239 355 -169 2 624 533 129 82 120 chr6 5170537 5170695 -144346342 + RLTR28 LTR ERVL 352 503 -21 2 624 186 43 0 0 chr6 5172308 5172331 -144344706 + (TGGGGG)n Simple_repeat Simple_repeat 4 26 0 2 624 410 194 0 125 chr6 5172657 5172769 -144344268 + MTC LTR MaLR 1 98 -323 2 624 1287 107 6 0 chr6 5172778 5172955 -144344082 - B2_Mm1t SINE B2 -14 179 2 2 624 1619 43 0 0 chr6 5172987 5173175 -144343862 + B2_Mm1a SINE B2 2 189 -4 2 624 21856 64 1 87 chr6 5173177 5176476 -144340561 + L1_Mm LINE L1 2540 5555 -328 2 624 1536 187 39 21 chr6 5176476 5176507 -144340530 + MTC LTR MaLR 72 104 -317 2 624 8350 40 2 0 chr6 5176507 5177487 -144339550 + L1Md_F2 LINE L1 5587 6568 -14 2 624 1416 71 5 21 chr6 5177489 5177677 -144339360 - B2_Mm1t SINE B2 -8 185 1 2 624 1536 187 39 21 chr6 5177677 5177980 -144339057 + MTC LTR MaLR 105 415 -6 2 624 200 222 74 0 chr6 5178128 5178236 -144338801 + (TA)n Simple_repeat Simple_repeat 2 117 0 2 624 28 48 0 0 chr6 5178546 5178588 -144338449 + AT_rich Low_complexity Low_complexity 1 42 0 2 624 440 330 38 41 chr6 5178674 5179029 -144338008 - Lx9 LINE L1 -1 7472 7131 2 624 348 274 59 8 chr6 5179532 5179650 -144337387 - RSINE1 SINE B4 -13 152 29 2 624 198 0 0 0 chr6 5181217 5181239 -144335798 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2 624 426 244 143 0 chr6 5181239 5181358 -144335679 - B1_Mur2 SINE Alu -12 137 2 2 624 1111 72 0 0 chr6 5181586 5181725 -144335312 + B1_Mus2 SINE Alu 1 139 -8 2 624 190 0 67 0 chr6 5181725 5181755 -144335282 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 624 186 43 0 0 chr6 5181755 5181778 -144335259 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 624 1087 69 214 0 chr6 5181779 5181919 -144335118 + B2_Mm1t SINE B2 1 158 -35 2 624 348 24 0 0 chr6 5181919 5181960 -144335077 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 2 624 1087 69 214 0 chr6 5181960 5181978 -144335059 + B2_Mm1t SINE B2 159 191 -2 2 624 1170 253 28 28 chr6 5182792 5183077 -144333960 - B4 SINE B4 -6 286 2 2 624 225 83 0 0 chr6 5183486 5183522 -144333515 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 624 634 235 8 8 chr6 5183587 5183720 -144333317 - RSINE1 SINE B4 -22 143 11 2 624 3102 67 15 5 chr6 5184300 5184704 -144332333 - L1Md_F2 LINE L1 -12 6570 6163 2 624 238 370 37 12 chr6 5184835 5184999 -144332038 - MLT1C LTR MaLR 0 467 300 2 624 365 30 76 0 chr6 5185260 5185326 -144331711 + (TTTTG)n Simple_repeat Simple_repeat 5 75 0 2 624 1066 82 14 7 chr6 5185328 5185475 -144331562 - B1_Mus1 SINE Alu 0 148 1 2 624 276 30 0 0 chr6 5185780 5185813 -144331224 + (TTC)n Simple_repeat Simple_repeat 1 33 0 2 624 1173 105 16 11 chr6 5186095 5186278 -144330759 - L1_Mus3 LINE L1 0 6638 6455 2 624 28 0 0 0 chr6 5186405 5186433 -144330604 + AT_rich Low_complexity Low_complexity 1 28 0 2 624 261 254 52 27 chr6 5187118 5187231 -144329806 - PB1 SINE Alu -1 126 1 2 624 21 0 0 0 chr6 5188740 5188761 -144328276 + AT_rich Low_complexity Low_complexity 1 21 0 2 624 545 310 11 11 chr6 5188848 5189037 -144328000 - L1MB7 LINE L1 -16 6168 5980 2 624 210 91 0 0 chr6 5189087 5189120 -144327917 + (TATTG)n Simple_repeat Simple_repeat 3 35 0 2 624 635 295 144 8 chr6 5189129 5189385 -144327652 - L1MB7 LINE L1 -417 5767 5477 2 624 267 31 0 0 chr6 5189400 5189432 -144327605 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 624 309 155 0 0 chr6 5189446 5189504 -144327533 + (TAG)n Simple_repeat Simple_repeat 2 59 0 2 624 403 273 19 126 chr6 5189540 5189699 -144327338 - B4A SINE B4 -44 248 107 2 624 604 297 40 31 chr6 5189744 5189945 -144327092 - L1MB7 LINE L1 -690 5484 5287 2 624 2143 174 74 0 chr6 5189945 5190335 -144326702 + MTC LTR MaLR 3 421 0 2 624 604 255 50 43 chr6 5190335 5190520 -144326517 - L1MB7 LINE L1 -858 5288 5096 2 624 8388 51 0 0 chr6 5191167 5192267 -144324770 - L1Md_F2 LINE L1 -1 6581 5482 2 624 348 24 0 0 chr6 5193766 5193807 -144323230 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 624 429 20 0 0 chr6 5193807 5193856 -144323181 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 624 2043 43 0 27 chr6 5195291 5195554 -144321483 - L1Md_F2 LINE L1 0 6582 6327 2 624 326 123 18 0 chr6 5195654 5195711 -144321326 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 2 624 352 310 61 31 chr6 5197084 5197247 -144319790 + MLT1G1 LTR MaLR 67 234 -345 2 624 229 262 15 15 chr6 5197251 5197317 -144319720 + CT-rich Low_complexity Low_complexity 2 67 0 2 624 234 331 88 50 chr6 5197431 5197525 -144319512 + MLT1G1 LTR MaLR 415 517 -62 2 624 526 239 0 9 chr6 5197525 5197639 -144319398 - PB1D10 SINE Alu 0 117 5 2 624 234 331 88 50 chr6 5197639 5197703 -144319334 + MLT1G1 LTR MaLR 518 579 0 2 624 216 67 0 0 chr6 5198808 5198838 -144318199 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 624 238 254 0 0 chr6 5199394 5199449 -144317588 + Tigger5 DNA MER2_type 2302 2356 -50 2 624 495 0 0 0 chr6 5200039 5200094 -144316943 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2 624 221 218 70 93 chr6 5200447 5200533 -144316504 + PB1D10 SINE Alu 14 97 -20 2 624 1164 101 0 0 chr6 5200860 5201029 -144316008 + (CA)n Simple_repeat Simple_repeat 2 170 0 2 624 734 146 22 0 chr6 5201929 5202066 -144314971 + URR1B DNA MER1_type 83 222 -3 2 624 186 118 0 0 chr6 5202174 5202208 -144314829 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 624 30 0 0 0 chr6 5202677 5202707 -144314330 + AT_rich Low_complexity Low_complexity 1 30 0 2 624 1013 123 0 0 chr6 5202707 5202853 -144314184 - B1_Mus2 SINE Alu 0 147 2 2 624 975 60 105 0 chr6 5202882 5203015 -144314022 - B1_Mus2 SINE Alu 0 147 1 2 624 386 278 200 0 chr6 5203043 5203223 -144313814 + ID_B1 SINE B4 2 217 -7 2 624 264 30 0 0 chr6 5203240 5203273 -144313764 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 624 375 247 23 11 chr6 5203867 5204043 -144312994 + GA-rich Low_complexity Low_complexity 2 179 0 2 624 397 147 11 84 chr6 5204081 5204259 -144312778 + GA-rich Low_complexity Low_complexity 3 167 0 2 624 225 159 0 0 chr6 5206936 5206980 -144310057 + (TAA)n Simple_repeat Simple_repeat 1 44 0 2 624 2891 72 48 5 chr6 5207223 5207617 -144309420 - RLTR10A LTR ERVK 0 411 1 2 624 5366 62 16 14 chr6 5207617 5208315 -144308722 - RLTR10-int LTR ERVK -1 1986 1288 2 624 1645 69 9 0 chr6 5208316 5208532 -144308505 - IAP-d-int LTR ERVK -658 5884 5667 2 624 2048 61 128 11 chr6 5208538 5209004 -144308033 - IAP-d-int LTR ERVK -1015 5527 5007 2 624 855 170 26 0 chr6 5209004 5209157 -144307880 - IAP-d-int LTR ERVK -6039 503 347 2 624 1541 124 67 21 chr6 5209159 5209449 -144307588 - IAP-d-int LTR ERVK -1385 602 75 2 624 2873 67 54 5 chr6 5209449 5209841 -144307196 - RLTR10A LTR ERVK 0 411 1 2 624 267 79 0 0 chr6 5210641 5210679 -144306358 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 2 624 709 91 82 15 chr6 5210684 5210818 -144306219 - Lx2A1 LINE L1 -1 7007 6865 2 624 568 213 8 24 chr6 5211026 5211151 -144305886 + B3 SINE B2 3 125 -91 2 624 182 37 37 0 chr6 5211153 5211180 -144305857 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 624 2749 59 48 8 chr6 5211304 5211391 -144305646 - Lx3_Mus LINE L1 0 7009 6924 2 624 207 0 0 0 chr6 5211391 5211414 -144305623 + (CACCC)n Simple_repeat Simple_repeat 5 27 0 2 624 2749 59 48 8 chr6 5211414 5211700 -144305337 - Lx3_Mus LINE L1 -86 6923 6622 2 624 2232 109 36 0 chr6 5211700 5212031 -144305006 + Lx3_Mus LINE L1 6312 6654 -355 2 624 441 223 19 0 chr6 5212100 5212203 -144304834 - PB1D9 SINE Alu -10 110 6 2 624 331 277 92 8 chr6 5212686 5212806 -144304231 + B4A SINE B4 2 131 -161 2 624 456 19 0 0 chr6 5212895 5212948 -144304089 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 624 360 0 0 0 chr6 5212948 5212987 -144304050 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 624 275 211 16 4 chr6 5214530 5214595 -144302442 + B1_Mur1 SINE Alu 73 140 -9 2 624 462 18 0 0 chr6 5215069 5215124 -144301913 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 624 23 0 0 0 chr6 5217173 5217196 -144299841 + AT_rich Low_complexity Low_complexity 1 23 0 2 624 195 100 0 0 chr6 5219546 5219576 -144297461 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2 624 21 71 0 0 chr6 5219576 5219618 -144297419 + AT_rich Low_complexity Low_complexity 1 42 0 2 624 207 162 0 0 chr6 5220153 5220190 -144296847 + T-rich Low_complexity Low_complexity 1 37 0 2 624 261 0 0 0 chr6 5220743 5220772 -144296265 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 624 306 0 0 0 chr6 5220784 5220818 -144296219 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 624 835 276 18 0 chr6 5220963 5221180 -144295857 - Lx8 LINE L1 -158 7315 7095 3 624 420 71 0 0 chr6 5221288 5221344 -144295693 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 624 180 0 0 0 chr6 5221596 5221616 -144295421 + (CCA)n Simple_repeat Simple_repeat 2 21 0 3 624 203 184 20 0 chr6 5222885 5222934 -144294103 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 624 181 362 85 15 chr6 5223848 5224047 -144292990 + L2a LINE L2 2932 3144 -282 3 624 280 41 40 20 chr6 5225367 5225417 -144291620 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 3 624 549 127 175 10 chr6 5225418 5225521 -144291516 - PB1D9 SINE Alu 0 120 1 3 624 338 0 24 0 chr6 5227203 5227245 -144289792 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 624 468 248 32 32 chr6 5227252 5227377 -144289660 - RSINE1 SINE B4 -32 133 9 3 624 315 283 12 110 chr6 5227427 5227590 -144289447 - B4 SINE B4 -145 147 1 3 624 225 286 53 99 chr6 5229052 5229223 -144287814 + Charlie4z DNA MER1_type 3 165 -2 3 624 180 135 0 0 chr6 5229405 5229442 -144287595 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 624 222 91 0 0 chr6 5230217 5230250 -144286787 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 3 624 257 307 40 0 chr6 5230363 5230438 -144286599 + RSINE1 SINE B4 7 84 -81 3 624 402 254 0 157 chr6 5231178 5231318 -144285719 - B1F2 SINE Alu -31 118 1 3 624 226 180 16 16 chr6 5231569 5231631 -144285406 + GA-rich Low_complexity Low_complexity 4 65 0 3 624 333 0 0 0 chr6 5232012 5232049 -144284988 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 624 387 0 0 0 chr6 5232049 5232091 -144284946 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 624 414 229 12 105 chr6 5233436 5233607 -144283430 + L1MA5A LINE L1 5173 5327 -816 3 624 731 88 9 0 chr6 5233620 5233733 -144283304 + (TC)n Simple_repeat Simple_repeat 2 115 0 3 624 348 24 0 0 chr6 5233733 5233773 -144283264 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 624 497 259 89 57 chr6 5233774 5234056 -144282981 + L1MA5A LINE L1 5545 5835 -462 3 624 304 326 20 98 chr6 5234059 5234212 -144282825 + B1F1 SINE Alu 9 149 0 3 624 180 97 0 0 chr6 5234215 5234246 -144282791 + (A)n Simple_repeat Simple_repeat 1 31 0 3 624 359 338 73 92 chr6 5234273 5234710 -144282327 + L1MA5A LINE L1 5817 6245 -55 3 624 1439 77 16 0 chr6 5234932 5235115 -144281922 + B2_Mm2 SINE B2 2 187 -8 3 624 240 356 0 9 chr6 5235370 5235486 -144281551 + CT-rich Low_complexity Low_complexity 2 116 0 3 624 384 285 28 2 chr6 5235884 5236006 -144281031 + B1F SINE Alu 4 127 -22 3 624 24 32 0 0 chr6 5236271 5236302 -144280735 + AT_rich Low_complexity Low_complexity 1 31 0 3 624 402 185 12 0 chr6 5236383 5236464 -144280573 + B1_Mur1 SINE Alu 68 149 0 3 624 339 227 0 0 chr6 5236492 5236558 -144280479 + B4 SINE B4 2 67 -225 3 624 201 94 0 0 chr6 5236737 5236769 -144280268 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 624 402 21 0 0 chr6 5236771 5236818 -144280219 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 624 1316 246 53 17 chr6 5238331 5238690 -144278347 + ORR1D1 LTR MaLR 3 374 0 3 624 413 253 19 68 chr6 5239411 5239572 -144277465 - RSINE1 SINE B4 -1 164 12 3 624 21 36 0 0 chr6 5239582 5239610 -144277427 + AT_rich Low_complexity Low_complexity 1 28 0 3 624 191 276 146 40 chr6 5240215 5240366 -144276671 + MIR3 SINE MIR 36 202 -6 3 624 370 264 312 6 chr6 5241921 5242081 -144274956 + ID_B1 SINE B4 1 209 -15 3 624 203 224 20 0 chr6 5242143 5242192 -144274845 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 3 624 1009 290 7 56 chr6 5242193 5242496 -144274541 - B4A SINE B4 0 292 5 3 624 304 321 42 67 chr6 5242671 5242791 -144274246 + RSINE1 SINE B4 5 121 -44 3 624 260 111 22 0 chr6 5242798 5242843 -144274194 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 625 1121 267 10 20 chr6 5243564 5243858 -144273179 + B4A SINE B4 2 292 0 3 625 470 230 7 0 chr6 5244163 5244311 -144272726 + (TG)n Simple_repeat Simple_repeat 1 149 0 3 625 280 296 61 0 chr6 5244397 5244512 -144272525 - B4A SINE B4 -168 124 3 3 625 472 294 70 89 chr6 5244757 5245155 -144271882 + L1M2 LINE L1 5095 5487 -813 3 625 413 211 87 56 chr6 5245338 5245499 -144271538 + L1M2 LINE L1 5616 5781 -519 3 625 338 343 0 18 chr6 5245542 5245652 -144271385 + PB1D7 SINE Alu 6 113 -7 3 625 239 262 0 0 chr6 5245655 5245681 -144271356 + polypurine Low_complexity Low_complexity 4 29 0 3 625 819 101 0 0 chr6 5245681 5245800 -144271237 + (GGGGA)n Simple_repeat Simple_repeat 4 122 0 3 625 239 262 0 0 chr6 5245800 5245834 -144271203 + polypurine Low_complexity Low_complexity 30 63 0 3 625 2475 65 31 0 chr6 5245875 5246198 -144270839 + L1_Mus3 LINE L1 6304 6636 -2 3 625 228 232 0 0 chr6 5246416 5246472 -144270565 + L1MA5 LINE L1 6244 6299 -1 3 625 323 227 0 0 chr6 5246844 5246910 -144270127 - ID4 SINE ID -6 77 12 3 625 783 104 0 0 chr6 5246972 5247087 -144269950 + (GAGAA)n Simple_repeat Simple_repeat 2 116 0 3 625 235 291 198 9 chr6 5247100 5247211 -144269826 + B1_Mus2 SINE Alu 8 139 -8 3 625 219 319 116 0 chr6 5248660 5248729 -144268308 - ID4 SINE ID -4 79 3 3 625 27 49 0 0 chr6 5248772 5248813 -144268224 + AT_rich Low_complexity Low_complexity 1 41 0 3 625 214 329 35 12 chr6 5248873 5248959 -144268078 - PB1D10 SINE Alu 0 117 30 3 625 456 242 0 0 chr6 5249001 5249092 -144267945 - B3 SINE B2 -4 212 122 3 625 1158 88 0 0 chr6 5249266 5249413 -144267624 + B1_Mus2 SINE Alu 1 147 0 3 625 290 196 26 10 chr6 5251200 5251276 -144265761 - B3A SINE B2 -40 176 100 3 625 272 241 77 44 chr6 5251852 5251943 -144265094 - MER5C DNA MER1_type -69 244 151 3 625 21 0 0 0 chr6 5252572 5252593 -144264444 + AT_rich Low_complexity Low_complexity 1 21 0 3 625 670 212 0 16 chr6 5252777 5252959 -144264078 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 625 208 298 59 28 chr6 5253911 5254044 -144262993 - MIR SINE MIR -65 203 69 3 625 1149 152 386 3 chr6 5254051 5254354 -144262683 - MTC LTR MaLR 0 421 3 3 625 901 116 12 0 chr6 5254620 5254793 -144262244 + (GA)n Simple_repeat Simple_repeat 2 176 0 3 625 627 290 36 14 chr6 5254946 5255222 -144261815 + L1MA6 LINE L1 5826 6107 -193 3 625 552 152 0 0 chr6 5255494 5255593 -144261444 + CT-rich Low_complexity Low_complexity 3 101 0 3 625 234 0 0 0 chr6 5255602 5255628 -144261409 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 3 625 294 365 8 25 chr6 5256014 5256132 -144260905 + PB1D10 SINE Alu 2 117 0 3 625 24 32 0 0 chr6 5256352 5256383 -144260654 + AT_rich Low_complexity Low_complexity 1 31 0 3 625 326 286 86 35 chr6 5256383 5256499 -144260538 - RSINE1 SINE B4 -10 155 34 3 625 629 110 10 0 chr6 5256504 5256604 -144260433 + (TCC)n Simple_repeat Simple_repeat 3 103 0 3 625 293 280 27 0 chr6 5256669 5256744 -144260293 - ID4_ SINE ID 0 83 7 3 625 218 160 40 0 chr6 5257200 5257250 -144259787 + A-rich Low_complexity Low_complexity 2 53 0 3 625 234 0 0 0 chr6 5257303 5257329 -144259708 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 625 261 0 0 0 chr6 5257437 5257466 -144259571 + (CGAG)n Simple_repeat Simple_repeat 1 29 0 3 625 701 315 49 58 chr6 5257552 5257899 -144259138 - MER2 DNA MER2_type -1 344 1 3 625 207 100 0 0 chr6 5258617 5258647 -144258390 + (T)n Simple_repeat Simple_repeat 1 30 0 3 625 345 145 0 0 chr6 5259038 5259100 -144257937 + (TCCCC)n Simple_repeat Simple_repeat 3 64 0 3 625 278 134 0 26 chr6 5259144 5259201 -144257836 - B1_Mur1 SINE Alu -1 149 96 3 625 2374 96 0 15 chr6 5259297 5259637 -144257400 + L1Md_F2 LINE L1 6248 6582 0 3 625 302 298 99 0 chr6 5260625 5260746 -144256291 - ID_B1 SINE B4 -18 206 74 3 625 25 0 0 0 chr6 5260839 5260864 -144256173 + AT_rich Low_complexity Low_complexity 1 25 0 3 625 194 57 0 54 chr6 5260915 5260952 -144256085 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 625 9697 23 0 1 chr6 5260954 5262740 -144254297 - L1Md_A LINE L1 0 6582 4798 3 625 25 65 0 0 chr6 5263058 5263104 -144253933 + AT_rich Low_complexity Low_complexity 1 46 0 3 625 457 244 115 55 chr6 5263200 5263382 -144253655 - B3A SINE B2 -1 197 5 3 625 3664 191 174 39 chr6 5263578 5264449 -144252588 - RMER1B Other Other -1 1065 73 3 625 369 0 0 0 chr6 5264449 5264490 -144252547 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 625 3664 191 174 39 chr6 5264490 5264518 -144252519 - RMER1B Other Other -994 72 45 3 625 180 219 0 0 chr6 5264609 5264650 -144252387 + (CTA)n Simple_repeat Simple_repeat 1 41 0 3 625 927 329 98 28 chr6 5264961 5265462 -144251575 + Lx8 LINE L1 6096 6631 -842 3 625 449 282 121 24 chr6 5265464 5265671 -144251366 + ORR1E LTR MaLR 5 231 -128 3 625 3455 150 74 27 chr6 5265732 5266391 -144250646 + RMER6C LTR ERVK 1 690 0 3 625 388 252 56 48 chr6 5266418 5266543 -144250494 + Lx8 LINE L1 6720 6845 -628 3 625 303 28 0 0 chr6 5266543 5266579 -144250458 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3 625 1756 231 98 39 chr6 5266586 5267146 -144249891 - RMER13A LTR ERVK 0 860 268 3 625 1339 82 0 0 chr6 5267146 5267330 -144249707 - RLTR9B2 LTR ERVK 0 420 237 3 625 2774 103 31 86 chr6 5267331 5267841 -144249196 + RLTR45 LTR ERVK 1 482 0 3 625 4766 55 92 14 chr6 5267841 5268483 -144248554 + RLTR45-int LTR ERVK 1 692 -6552 3 625 1153 51 0 0 chr6 5268781 5268919 -144248118 + RLTR45-int LTR ERVK 681 818 -6426 3 625 263 228 52 52 chr6 5269319 5269416 -144247621 + MMTV-int LTR ERVK 2413 2509 -4744 3 625 8397 87 34 36 chr6 5269703 5271154 -144245883 + RLTR45-int LTR ERVK 1322 2783 -4461 3 625 1600 21 0 26 chr6 5271154 5271346 -144245691 - B2_Mm1a SINE B2 -5 188 2 4 625 4143 203 105 107 chr6 5271346 5271789 -144245248 + RLTR45-int LTR ERVK 2771 3212 -4032 3 625 4000 83 30 31 chr6 5271759 5272367 -144244670 + RLTR45-int LTR ERVK 3380 3986 -3258 3 625 8332 39 6 20 chr6 5272360 5273383 -144243654 + RLTR45-int LTR ERVK 5065 6072 -1172 3 625 1914 104 10 3 chr6 5273406 5273706 -144243331 + RLTR13B1 LTR ERVK 207 508 -385 4 625 7864 48 0 1 chr6 5273706 5274619 -144242418 + RLTR45-int LTR ERVK 6333 7244 0 3 625 2373 106 102 94 chr6 5274619 5275097 -144241940 + RLTR45 LTR ERVK 1 482 0 3 625 1041 160 100 5 chr6 5275097 5275317 -144241720 - RLTR9B2 LTR ERVK -179 241 1 4 625 1445 169 7 33 chr6 5275321 5275597 -144241440 - RMER13A LTR ERVK -591 269 1 4 625 1006 271 67 46 chr6 5275597 5275925 -144241112 + Lx8 LINE L1 6858 7192 -281 3 625 180 111 0 0 chr6 5276031 5276058 -144240979 + (CAA)n Simple_repeat Simple_repeat 3 29 0 4 625 917 290 7 43 chr6 5276510 5276809 -144240228 - B4 SINE B4 -4 288 1 4 625 331 281 163 69 chr6 5277064 5277301 -144239736 - B4 SINE B4 -18 274 14 4 625 2880 36 0 3 chr6 5277301 5277639 -144239398 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 625 10523 11 1 5 chr6 5277646 5278801 -144238236 - IAPEz-int LTR ERVK -7 6474 5325 4 625 23639 35 43 14 chr6 5278795 5281664 -144235373 - IAPEz-int LTR ERVK -3520 2961 8 4 625 2880 36 0 3 chr6 5281664 5282002 -144235035 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 625 489 80 0 0 chr6 5282030 5282105 -144234932 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 625 1177 204 175 0 chr6 5282609 5282684 -144234353 - RLTR20D LTR ERVK 0 568 463 4 625 183 42 0 0 chr6 5282684 5282708 -144234329 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 625 1177 204 175 0 chr6 5282708 5282941 -144234096 - RLTR20D LTR ERVK -106 462 207 4 625 405 0 0 0 chr6 5282942 5282987 -144234050 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 625 418 119 0 0 chr6 5282988 5283055 -144233982 - RLTR20D LTR ERVK -501 67 1 4 625 1887 234 119 64 chr6 5283072 5283535 -144233502 + Lx7 LINE L1 6901 7362 -334 4 625 186 43 0 0 chr6 5283535 5283558 -144233479 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 625 1887 234 119 64 chr6 5283558 5283666 -144233371 + Lx7 LINE L1 7363 7499 -197 4 625 1162 68 0 0 chr6 5283666 5283813 -144233224 + B1_Mus1 SINE Alu 2 148 0 4 625 1887 234 119 64 chr6 5283813 5283994 -144233043 + Lx7 LINE L1 7500 7696 0 4 625 180 0 0 0 chr6 5283996 5284016 -144233021 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 4 625 497 116 130 16 chr6 5284016 5284139 -144232898 - Lx3_Mus LINE L1 0 7009 6873 4 625 2539 101 30 89 chr6 5284140 5284577 -144232460 + RLTR9F LTR ERVK 1 411 -4 4 625 1198 250 33 53 chr6 5284580 5284973 -144232064 + ETnERV2-int LTR ERVK 3 387 -2927 4 625 6819 109 70 26 chr6 5284980 5286119 -144230918 + ETnERV2-int LTR ERVK 1056 2244 -5162 4 625 9921 117 28 11 chr6 5286110 5287260 -144229777 + ETnERV2-int LTR ERVK 2494 3666 -3740 4 625 2873 67 221 2 chr6 5287260 5287680 -144229357 + RLTR1B LTR ERV1 1 512 0 4 625 9921 117 28 11 chr6 5287680 5288103 -144228934 + ETnERV2-int LTR ERVK 3667 4094 -3312 4 625 786 176 81 0 chr6 5288071 5288219 -144228818 + ETnERV2-int LTR ERVK 4585 4744 -2500 4 625 254 167 56 0 chr6 5288233 5288287 -144228750 + ETnERV-int LTR ERVK 2063 2119 -1195 4 625 730 237 23 12 chr6 5288285 5288456 -144228581 + ETnERV2-int LTR ERVK 6257 6429 -977 4 625 456 124 25 12 chr6 5288656 5288741 -144228296 + ETnERV2-int LTR ERVK 7331 7406 0 4 625 2858 97 25 0 chr6 5288741 5289142 -144227895 + RLTR9F LTR ERVK 1 411 -4 4 625 8751 75 15 20 chr6 5289143 5290349 -144226688 - Lx3_Mus LINE L1 -132 6877 5709 4 625 714 82 0 0 chr6 5290564 5290662 -144226375 + (TG)n Simple_repeat Simple_repeat 2 99 0 4 625 399 225 54 0 chr6 5290702 5290813 -144226224 - B2_Mm2 SINE B2 -75 120 4 4 625 25 0 0 0 chr6 5290914 5290939 -144226098 + AT_rich Low_complexity Low_complexity 1 25 0 4 625 2921 141 17 48 chr6 5290940 5291460 -144225577 - Lx2B LINE L1 -9 6991 6488 4 625 450 0 0 0 chr6 5291468 5291518 -144225519 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 625 308 20 0 20 chr6 5291701 5291752 -144225285 - B2_Mm2 SINE B2 -9 186 137 4 625 998 134 79 0 chr6 5291854 5292018 -144225019 - B2_Mm1t SINE B2 -16 177 1 4 625 286 295 52 35 chr6 5292335 5292451 -144224586 + PB1D7 SINE Alu 3 120 0 4 625 4616 108 87 20 chr6 5293800 5294558 -144222479 + RMER17D2 LTR ERVK 1 809 0 4 625 26 50 0 0 chr6 5294666 5294706 -144222331 + AT_rich Low_complexity Low_complexity 1 40 0 4 625 226 177 121 48 chr6 5294895 5294978 -144222059 - L1MB8 LINE L1 -59 6119 6031 4 625 2043 203 47 16 chr6 5295003 5295555 -144221482 - Lx4B LINE L1 -5 7053 6375 4 625 287 327 132 41 chr6 5295759 5296123 -144220914 - L1MD2 LINE L1 -253 6106 5710 4 625 255 208 0 0 chr6 5296422 5296475 -144220562 - B1F1 SINE Alu -23 126 74 4 625 513 267 22 16 chr6 5296480 5296633 -144220404 - B1F1 SINE Alu -29 282 1 4 625 259 361 40 23 chr6 5296676 5296849 -144220188 - MLT1D LTR MaLR -59 446 271 4 625 26 50 0 0 chr6 5296923 5296963 -144220074 + AT_rich Low_complexity Low_complexity 1 40 0 4 625 3575 214 45 7 chr6 5296963 5297946 -144219091 - Lx7 LINE L1 -1200 6496 5461 4 625 4022 189 90 51 chr6 5297961 5298299 -144218738 - Lx7 LINE L1 -886 4994 4627 4 625 351 0 0 0 chr6 5298299 5298338 -144218699 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 625 4022 189 90 51 chr6 5298338 5298772 -144218265 - Lx7 LINE L1 -1254 4626 4214 4 625 1050 29 7 0 chr6 5298772 5298910 -144218127 - L1Md_F2 LINE L1 -1 6581 6443 4 625 4022 189 90 51 chr6 5298910 5299212 -144217825 - Lx7 LINE L1 -1667 4213 3878 4 625 369 259 75 87 chr6 5299228 5299401 -144217636 + RLTR20A LTR ERVK 55 225 -352 4 625 2290 78 3 7 chr6 5299401 5299697 -144217340 - L1_Mus1 LINE L1 -174 5709 5415 4 625 6540 65 26 0 chr6 5299687 5300508 -144216529 + L1_Mus1 LINE L1 5726 6567 0 4 625 1220 195 49 63 chr6 5300514 5300881 -144216156 + RLTR20A LTR ERVK 180 541 0 4 625 363 60 0 0 chr6 5301107 5301157 -144215880 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 625 307 115 0 0 chr6 5301824 5301876 -144215161 + MYSERV16_I-int LTR ERVK 301 352 -1974 4 625 4726 162 48 42 chr6 5301970 5302927 -144214110 + MYSERV16_I-int LTR ERVK 1 1384 -1458 4 625 5585 142 22 11 chr6 5302932 5303909 -144213128 + MYSERV16_I-int LTR ERVK 1067 2054 -272 4 625 783 153 223 17 chr6 5304016 5304249 -144212788 + MYSERV16_I-int LTR ERVK 2038 2318 -8 4 625 1255 266 56 29 chr6 5304299 5304748 -144212289 + RLTR20A1 LTR ERVK 69 529 -22 4 625 4306 181 19 119 chr6 5304766 5304930 -144212107 - Lx7 LINE L1 -1989 3891 3748 4 625 1062 144 0 0 chr6 5304930 5305110 -144211927 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 625 4306 181 19 119 chr6 5305110 5305665 -144211372 - Lx7 LINE L1 -2133 3747 3268 4 625 1181 107 79 0 chr6 5305665 5305843 -144211194 - B2_Mm1t SINE B2 -1 192 1 4 625 4306 181 19 119 chr6 5305843 5306268 -144210769 - Lx7 LINE L1 -2613 3267 2861 4 625 544 219 182 13 chr6 5306257 5306488 -144210549 - Lx7 LINE L1 -4231 1649 1380 4 625 255 266 64 0 chr6 5306839 5306933 -144210104 - IAPEz-int LTR ERVK -5547 934 835 4 625 222 86 0 139 chr6 5307063 5307265 -144209772 + (TCTCTG)n Simple_repeat Simple_repeat 4 177 0 4 625 2483 231 72 18 chr6 5307318 5308038 -144208999 - Lx7 LINE L1 -4492 1388 631 4 625 2140 81 39 0 chr6 5308042 5308349 -144208688 + ORR1A2 LTR MaLR 1 319 -8 4 625 5062 162 32 9 chr6 5308353 5309382 -144207655 + ORR1A2-int LTR MaLR 1 978 -392 4 625 377 189 10 59 chr6 5309409 5309510 -144207527 - PB1D10 SINE Alu -5 112 17 4 625 277 242 30 50 chr6 5309426 5309526 -144207511 - ID_B1 SINE B4 -48 176 79 4 625 309 26 0 0 chr6 5310217 5310255 -144206782 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 4 625 469 232 47 31 chr6 5310255 5310384 -144206653 - B1_Mur1 SINE Alu 0 149 19 4 625 413 281 9 17 chr6 5310502 5310618 -144206419 - B3A SINE B2 -79 119 5 4 625 681 123 0 0 chr6 5310867 5310973 -144206064 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 4 625 586 258 14 104 chr6 5310973 5311031 -144206006 - B3A SINE B2 -4 194 149 4 625 318 87 0 0 chr6 5311031 5311077 -144205960 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 625 586 258 14 104 chr6 5311077 5311230 -144205807 - B3A SINE B2 -50 148 2 4 625 493 302 47 17 chr6 5311241 5311620 -144205417 - L1MEf LINE L1 -4992 1208 817 4 625 784 164 0 50 chr6 5312525 5312666 -144204371 + B1_Mm SINE Alu 2 135 -12 4 625 683 54 11 0 chr6 5312667 5312759 -144204278 + (GAAAA)n Simple_repeat Simple_repeat 2 94 0 4 625 1894 287 83 126 chr6 5312780 5313416 -144203621 - Lx8 LINE L1 -18 7455 6760 4 625 1167 256 64 31 chr6 5313416 5313774 -144203263 + ORR1D2 LTR MaLR 1 370 0 4 625 1894 282 64 103 chr6 5313774 5314569 -144202468 - Lx8 LINE L1 -714 6759 6291 4 625 303 161 0 0 chr6 5314578 5314634 -144202403 + CT-rich Low_complexity Low_complexity 1 56 0 4 625 271 252 66 19 chr6 5314655 5314784 -144202253 - L1M2 LINE L1 -1689 4454 4279 4 625 743 209 7 0 chr6 5314800 5315116 -144201921 + (TG)n Simple_repeat Simple_repeat 1 318 0 4 625 311 205 84 0 chr6 5315206 5315289 -144201748 - PB1D10 SINE Alu -2 115 26 4 625 22 0 0 0 chr6 5316193 5316215 -144200822 + AT_rich Low_complexity Low_complexity 1 22 0 4 625 306 180 0 0 chr6 5316955 5317016 -144200021 + GA-rich Low_complexity Low_complexity 2 62 0 4 625 997 56 0 27 chr6 5317067 5317213 -144199824 - B1_Mus2 SINE Alu 0 147 6 4 625 274 212 57 34 chr6 5317211 5317299 -144199738 - ORR1D2 LTR MaLR -263 107 18 4 625 281 337 12 0 chr6 5317423 5317506 -144199531 + RSINE1 SINE B4 44 127 -38 4 625 342 0 0 0 chr6 5317530 5317568 -144199469 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 625 8075 60 7 1 chr6 5317639 5318724 -144198313 - L1Md_F2 LINE L1 -1 6581 5491 4 625 17916 84 4 7 chr6 5318722 5321441 -144195596 - L1Md_F2 LINE L1 -2269 3614 927 4 625 180 0 0 0 chr6 5321441 5321461 -144195576 + (TTG)n Simple_repeat Simple_repeat 3 22 0 4 625 4357 168 26 30 chr6 5321461 5321900 -144195137 - L1Md_F2 LINE L1 -5798 926 467 4 625 600 287 0 0 chr6 5321954 5322097 -144194940 + B1_Mur2 SINE Alu 4 146 -3 4 625 225 0 0 0 chr6 5323845 5323870 -144193167 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 625 229 361 9 27 chr6 5324183 5324294 -144192743 - MamGypLTR1b LTR Gypsy -74 708 600 4 625 296 242 20 40 chr6 5324373 5324472 -144192565 - MamGypLTR1b LTR Gypsy -684 98 2 4 625 240 94 0 185 chr6 5324472 5324535 -144192502 + Charlie24 DNA MER1_type 2366 2416 -34 4 625 243 0 0 0 chr6 5325522 5325549 -144191488 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 625 465 288 17 70 chr6 5325606 5325778 -144191259 - B4 SINE B4 -2 290 128 4 625 180 0 0 0 chr6 5326476 5326496 -144190541 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 4 625 269 211 48 78 chr6 5326506 5326609 -144190428 - PB1D10 SINE Alu -1 116 17 4 625 330 26 0 0 chr6 5327152 5327191 -144189846 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 625 195 42 0 0 chr6 5328139 5328163 -144188874 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 4 625 816 141 0 0 chr6 5328527 5328662 -144188375 + (TTC)n Simple_repeat Simple_repeat 3 137 0 4 625 623 271 0 0 chr6 5328667 5328811 -144188226 - B1_Mur2 SINE Alu -5 144 1 4 625 1179 68 7 0 chr6 5328873 5329020 -144188017 - B1_Mus1 SINE Alu 0 148 1 4 625 331 316 26 0 chr6 5329557 5329671 -144187366 + MER45A DNA Tip100 31 147 -31 4 625 579 268 7 13 chr6 5330482 5330637 -144186400 - MIR SINE MIR 0 262 109 4 625 352 327 89 31 chr6 5335308 5335622 -144181415 + MLT1G3 LTR MaLR 191 593 -2 4 625 218 70 0 65 chr6 5335740 5335786 -144181251 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 625 1156 62 7 0 chr6 5335898 5336043 -144180994 - B1_Mm SINE Alu -1 146 1 4 625 1398 89 5 15 chr6 5337030 5337225 -144179812 - B2_Mm1a SINE B2 0 193 1 4 625 228 292 28 0 chr6 5337452 5337524 -144179513 + ID4 SINE ID 1 74 -9 4 625 234 91 0 0 chr6 5337871 5337904 -144179133 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 4 625 256 301 23 68 chr6 5338355 5338487 -144178550 + LTR81B LTR ERV1? 1191 1316 -77 5 625 260 315 11 21 chr6 5338611 5338705 -144178332 + L2a LINE L2 3325 3417 -9 5 625 276 190 121 0 chr6 5339592 5339650 -144177387 + tRNA-Ala-GCA tRNA tRNA 2 66 -9 5 625 441 0 0 0 chr6 5339651 5339700 -144177337 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 625 471 35 0 0 chr6 5342908 5342965 -144174072 + (TTG)n Simple_repeat Simple_repeat 1 57 0 5 625 425 252 72 0 chr6 5344128 5344239 -144172798 - RSINE1 SINE B4 -44 121 3 5 625 189 0 0 0 chr6 5344481 5344502 -144172535 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 625 231 176 0 89 chr6 5344830 5344886 -144172151 + T-rich Low_complexity Low_complexity 1 51 0 5 625 444 77 0 0 chr6 5345689 5345754 -144171283 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 625 385 309 0 5 chr6 5347767 5347878 -144169159 + PB1D7 SINE Alu 3 113 -7 5 625 22 0 0 0 chr6 5348967 5348989 -144168048 + AT_rich Low_complexity Low_complexity 1 22 0 5 625 347 294 114 31 chr6 5349168 5349361 -144167676 - L1MD LINE L1 -2292 5703 5495 5 625 201 94 0 0 chr6 5349631 5349663 -144167374 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 625 211 303 0 29 chr6 5349663 5349731 -144167306 + CT-rich Low_complexity Low_complexity 3 68 0 5 625 231 303 53 53 chr6 5349776 5349870 -144167167 + PB1D10 SINE Alu 27 120 0 5 625 188 200 20 0 chr6 5350684 5350734 -144166303 + GA-rich Low_complexity Low_complexity 2 52 0 5 625 495 224 0 0 chr6 5350753 5350932 -144166105 + GA-rich Low_complexity Low_complexity 2 180 0 5 625 665 194 0 6 chr6 5350960 5351141 -144165896 + GA-rich Low_complexity Low_complexity 1 180 0 5 625 656 267 63 27 chr6 5351379 5351602 -144165435 - Lx8 LINE L1 0 7473 7243 5 625 364 214 18 0 chr6 5351998 5352110 -144164927 + (TA)n Simple_repeat Simple_repeat 1 114 0 5 625 186 43 0 0 chr6 5352272 5352295 -144164742 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 625 352 290 75 0 chr6 5352306 5352399 -144164638 - B1F SINE Alu -38 111 12 5 625 509 271 8 0 chr6 5352800 5352922 -144164115 - ID_B1 SINE B4 -5 219 97 5 625 312 83 0 0 chr6 5353054 5353102 -144163935 + (T)n Simple_repeat Simple_repeat 1 48 0 5 625 28 0 0 0 chr6 5354453 5354481 -144162556 + AT_rich Low_complexity Low_complexity 1 28 0 5 625 292 288 78 66 chr6 5354829 5355092 -144161945 + L1M5 LINE L1 4090 4359 -1787 5 625 1215 61 59 24 chr6 5355118 5355287 -144161750 + B2_Mm2 SINE B2 2 176 -19 5 625 264 122 0 0 chr6 5355991 5356032 -144161005 + (T)n Simple_repeat Simple_repeat 1 41 0 5 625 300 300 170 14 chr6 5356112 5356335 -144160702 - HAL1 LINE L1 -892 1615 1358 5 625 239 305 36 12 chr6 5358618 5358701 -144158336 - MamSINE1 SINE tRNA -190 100 16 5 625 332 302 60 8 chr6 5358978 5359095 -144157942 - MIRb SINE MIR -14 254 132 5 625 333 0 0 0 chr6 5359369 5359406 -144157631 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 625 302 256 33 0 chr6 5360815 5360905 -144156132 + PB1D7 SINE Alu 3 95 -25 5 625 256 203 0 17 chr6 5362059 5362119 -144154918 - MLT2D LTR ERVL -266 148 90 5 625 261 344 10 0 chr6 5362513 5362609 -144154428 + MLT1D LTR MaLR 404 500 -5 5 625 212 0 36 0 chr6 5362862 5362890 -144154147 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 625 203 267 91 80 chr6 5363618 5363805 -144153232 + L2 LINE L2 2292 2480 -939 5 625 1097 251 103 57 chr6 5365274 5365450 -144151587 - MTD LTR MaLR -2 417 221 5 625 3375 33 5 2 chr6 5365450 5365845 -144151192 + MTA_Mm LTR MaLR 1 396 0 5 625 1097 251 103 57 chr6 5365845 5365864 -144151173 - MTD LTR MaLR -199 220 202 5 625 243 0 0 0 chr6 5365864 5365891 -144151146 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 625 1097 251 103 57 chr6 5365891 5366082 -144150955 - MTD LTR MaLR -218 201 12 5 625 360 349 101 68 chr6 5366712 5367020 -144150017 - LTR78 LTR ERV1 -15 1289 972 5 625 322 277 46 8 chr6 5367493 5367624 -144149413 + MER20B DNA MER1_type 252 387 -396 5 625 870 97 21 0 chr6 5368108 5368252 -144148785 + (TCCC)n Simple_repeat Simple_repeat 4 150 0 5 625 612 160 0 0 chr6 5368252 5368352 -144148685 - PB1D9 SINE Alu -12 108 9 5 625 24 0 0 0 chr6 5369097 5369121 -144147916 + AT_rich Low_complexity Low_complexity 1 24 0 5 625 331 212 36 0 chr6 5369793 5369876 -144147161 + PB1D9 SINE Alu 5 94 -55 5 625 310 365 111 30 chr6 5369989 5370260 -144146777 + MLT1C LTR MaLR 1 293 -174 5 625 962 51 0 0 chr6 5370379 5370496 -144146541 - L1_Mus3 LINE L1 -313 6325 6209 5 625 2175 87 7 3 chr6 5370496 5370795 -144146242 + L1_Mus3 LINE L1 6338 6637 -1 5 625 216 335 62 10 chr6 5371600 5371793 -144145244 + MIR SINE MIR 3 205 -57 5 625 252 229 0 0 chr6 5372292 5372362 -144144675 + (TCTCTG)n Simple_repeat Simple_repeat 6 75 0 5 625 382 283 25 8 chr6 5372516 5372637 -144144400 + B3A SINE B2 2 124 -74 5 625 30 27 0 0 chr6 5372741 5372778 -144144259 + AT_rich Low_complexity Low_complexity 1 37 0 5 625 463 278 74 15 chr6 5372795 5372930 -144144107 - RSINE1 SINE B4 -2 163 21 5 625 22 0 0 0 chr6 5372937 5372959 -144144078 + AT_rich Low_complexity Low_complexity 1 22 0 5 626 421 195 8 25 chr6 5374663 5374784 -144142253 + (CATA)n Simple_repeat Simple_repeat 2 120 0 5 626 235 304 66 38 chr6 5374824 5374930 -144142107 + PB1D9 SINE Alu 1 109 -11 5 626 264 30 0 0 chr6 5376127 5376160 -144140877 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 626 742 282 73 26 chr6 5376312 5376585 -144140452 - B4A SINE B4 -6 286 1 5 626 714 96 0 0 chr6 5376891 5376995 -144140042 + (TC)n Simple_repeat Simple_repeat 2 105 0 5 626 2604 111 18 3 chr6 5377161 5377549 -144139488 + ORR1B1 LTR MaLR 1 394 0 5 626 423 0 0 0 chr6 5378427 5378474 -144138563 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 626 293 237 60 30 chr6 5378841 5378941 -144138096 - PB1D10 SINE Alu 0 117 15 5 626 1722 16 0 0 chr6 5378952 5379142 -144137895 - B2_Mm1a SINE B2 -2 191 2 5 626 212 0 0 35 chr6 5379276 5379305 -144137732 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 626 183 42 0 0 chr6 5381843 5381867 -144135170 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 5 626 201 74 0 0 chr6 5382198 5382225 -144134812 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 5 626 335 329 116 42 chr6 5384745 5384986 -144132051 + LTR33 LTR ERVL 206 464 -51 5 626 340 265 29 10 chr6 5385929 5386032 -144131005 - RMER15 LTR ERVL -65 510 406 5 626 335 222 17 17 chr6 5386907 5387026 -144130011 + CT-rich Low_complexity Low_complexity 2 120 0 5 626 189 0 0 0 chr6 5387040 5387061 -144129976 + (CCTCG)n Simple_repeat Simple_repeat 2 22 0 5 626 747 114 31 25 chr6 5387057 5387219 -144129818 + CT-rich Low_complexity Low_complexity 4 166 0 5 626 395 230 5 43 chr6 5387260 5387446 -144129591 + CT-rich Low_complexity Low_complexity 2 180 0 5 626 224 200 0 0 chr6 5388040 5388085 -144128952 + G-rich Low_complexity Low_complexity 1 45 0 5 626 284 263 9 0 chr6 5388105 5388219 -144128818 + CT-rich Low_complexity Low_complexity 3 117 0 5 626 268 273 55 41 chr6 5388934 5389079 -144127958 - RCHARR1 DNA MER1_type -386 588 442 5 626 649 330 78 12 chr6 5389203 5389445 -144127592 - RCHARR1 DNA MER1_type -714 260 3 5 626 860 215 11 11 chr6 5389454 5389637 -144127400 + ORR1E LTR MaLR 5 187 -172 5 626 183 156 0 0 chr6 5389643 5389675 -144127362 + CT-rich Low_complexity Low_complexity 2 33 0 5 626 473 244 111 70 chr6 5389700 5389872 -144127165 + ORR1E LTR MaLR 176 354 -5 5 626 2327 284 34 92 chr6 5390118 5391098 -144125939 - Lx9 LINE L1 -207 7437 6515 5 626 306 326 25 127 chr6 5391309 5391506 -144125531 + MTEa LTR MaLR 1 177 -202 5 626 1329 53 118 0 chr6 5391775 5391944 -144125093 - B2_Mm2 SINE B2 -6 189 1 5 626 327 306 104 0 chr6 5392153 5392287 -144124750 - MIR SINE MIR -66 196 49 5 626 188 133 0 43 chr6 5392341 5392388 -144124649 + (CATATA)n Simple_repeat Simple_repeat 1 45 0 5 626 276 200 0 0 chr6 5394139 5394204 -144122833 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 5 626 680 250 108 0 chr6 5395003 5395151 -144121886 - RSINE1 SINE B4 0 165 2 5 626 411 73 0 0 chr6 5396631 5396686 -144120351 + (CGGGG)n Simple_repeat Simple_repeat 5 59 0 5 626 1285 42 0 0 chr6 5396837 5396981 -144120056 + B1_Mus2 SINE Alu 2 145 -2 5 626 229 82 20 20 chr6 5396984 5397034 -144120003 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 5 626 273 163 0 0 chr6 5398384 5398433 -144118604 + T-rich Low_complexity Low_complexity 1 49 0 5 626 696 40 30 0 chr6 5398772 5398872 -144118165 + (TC)n Simple_repeat Simple_repeat 1 103 0 5 626 381 22 0 0 chr6 5398872 5398917 -144118120 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 626 245 375 58 45 chr6 5400255 5400498 -144116539 + MLT1L LTR MaLR 228 473 -137 5 626 442 274 96 84 chr6 5400942 5401181 -144115856 - ORR1E LTR MaLR -105 254 13 5 626 372 22 0 0 chr6 5401505 5401550 -144115487 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 626 4923 66 166 3 chr6 5401614 5402294 -144114743 + L1_Mus3 LINE L1 5845 6635 -3 5 626 278 250 0 86 chr6 5402294 5402364 -144114673 - B4A SINE B4 -6 286 223 5 626 521 269 67 67 chr6 5402405 5402584 -144114453 - B3A SINE B2 -18 180 2 5 626 553 306 50 72 chr6 5402603 5402617 -144114420 - B4A SINE B4 -74 218 205 5 626 3769 10 2 0 chr6 5402617 5403012 -144114025 + MTA_Mm LTR MaLR 1 396 0 5 626 553 306 50 72 chr6 5403012 5403219 -144113818 - B4A SINE B4 -88 204 2 5 626 303 28 0 0 chr6 5403516 5403552 -144113485 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 626 3736 72 96 36 chr6 5403747 5404279 -144112758 + LTRIS2 LTR ERV1 1 564 0 5 626 366 285 122 82 chr6 5404286 5404580 -144112457 + MLT1C LTR MaLR 132 437 -30 5 626 976 302 69 33 chr6 5404927 5405539 -144111498 + L1MA7 LINE L1 4558 5191 -952 5 626 1400 291 89 41 chr6 5405619 5406577 -144110460 + L1MA7 LINE L1 5282 6291 0 5 626 224 188 14 0 chr6 5407162 5407231 -144109806 + GA-rich Low_complexity Low_complexity 1 70 0 5 626 447 107 0 0 chr6 5407920 5407995 -144109042 + (CCAA)n Simple_repeat Simple_repeat 1 75 0 5 626 180 97 0 0 chr6 5408125 5408156 -144108881 + (A)n Simple_repeat Simple_repeat 1 31 0 6 626 1312 299 70 47 chr6 5408656 5409446 -144107591 - L1M5 LINE L1 -891 5255 4440 6 626 234 233 0 0 chr6 5409499 5409542 -144107495 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 626 381 100 17 0 chr6 5409606 5409666 -144107371 - Lx7 LINE L1 0 7696 7636 6 626 5444 166 34 52 chr6 5409680 5410845 -144106192 + L1_Mur3 LINE L1 4144 5288 -592 6 626 279 323 8 61 chr6 5410853 5411005 -144106032 - Lx7 LINE L1 -169 7527 7382 6 626 465 19 0 0 chr6 5411005 5411059 -144105978 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 626 279 323 8 61 chr6 5411059 5411153 -144105884 - Lx7 LINE L1 -315 7381 7294 6 626 825 261 22 63 chr6 5411160 5411430 -144105607 - B4A SINE B4 -33 259 1 6 626 279 231 0 15 chr6 5412084 5412150 -144104887 + MER34A1 LTR ERV1 4 68 -519 6 626 986 158 0 13 chr6 5412379 5412682 -144104355 + CT-rich Low_complexity Low_complexity 1 298 0 6 626 232 307 158 0 chr6 5412778 5412892 -144104145 + MER34A1 LTR ERV1 449 580 -7 6 626 246 262 170 1 chr6 5414028 5414131 -144102906 + MIR SINE MIR 100 222 -46 6 626 2265 118 115 3 chr6 5414682 5415055 -144101982 + RLTR9F LTR ERVK 1 415 0 6 626 2587 252 23 24 chr6 5415057 5415885 -144101152 + ETnERV2-int LTR ERVK 3 895 -2419 6 626 15261 219 33 23 chr6 5415879 5420201 -144096836 + ETnERV2-int LTR ERVK 1363 6240 -1166 6 626 459 97 27 14 chr6 5420411 5420484 -144096553 + ETnERV2-int LTR ERVK 7331 7404 -2 6 626 2248 111 121 3 chr6 5420485 5420856 -144096181 + RLTR9F LTR ERVK 1 415 0 6 626 215 305 0 0 chr6 5420885 5420944 -144096093 - L2b LINE L2 -1 3374 3316 6 626 242 402 17 17 chr6 5422168 5422287 -144094750 + RSINE1 SINE B4 3 121 -44 6 626 766 321 24 20 chr6 5422354 5422602 -144094435 + B4A SINE B4 2 250 -42 6 626 362 305 432 20 chr6 5424466 5424672 -144092365 + B4 SINE B4 2 292 0 6 626 255 189 0 0 chr6 5424850 5424903 -144092134 + (TGGA)n Simple_repeat Simple_repeat 2 54 0 6 626 592 203 52 15 chr6 5425141 5425276 -144091761 + ORR1D1 LTR MaLR 1 140 -234 6 626 309 124 23 6 chr6 5425280 5425340 -144091697 + ORR1D1 LTR MaLR 321 421 0 6 626 641 235 45 19 chr6 5425340 5425494 -144091543 + ORR1D1-int LTR MaLR 1 158 -1212 6 626 1670 184 78 16 chr6 5425494 5425880 -144091157 - RMER16 LTR ERVK 0 533 1 6 626 2235 261 106 12 chr6 5425880 5426549 -144090488 + ORR1D1-int LTR MaLR 153 884 -486 6 626 3848 28 33 0 chr6 5426549 5426971 -144090066 + RLTR10C LTR ERVK 1 436 0 6 626 20424 48 5 0 chr6 5426971 5429389 -144087648 + MMERVK10C-int LTR ERVK 3382 5810 -1771 6 626 7541 45 2 57 chr6 5429375 5430365 -144086672 + MMERVK10C-int LTR ERVK 6646 7581 0 6 626 3864 26 28 5 chr6 5430365 5430791 -144086246 + RLTR10C LTR ERVK 1 436 0 6 626 1849 166 199 21 chr6 5430791 5430864 -144086173 + ORR1D1-int LTR MaLR 879 975 -395 6 626 2638 137 36 11 chr6 5430864 5431306 -144085731 - RLTR11B LTR ERVK 0 453 1 6 626 1849 166 199 21 chr6 5431306 5431650 -144085387 + ORR1D1-int LTR MaLR 976 1370 0 6 626 1486 216 76 22 chr6 5431650 5432005 -144085032 + ORR1D1 LTR MaLR 1 374 0 6 626 3197 166 70 19 chr6 5432069 5432219 -144084818 + Lx2B LINE L1 6374 6524 -476 6 626 2550 117 40 5 chr6 5432219 5432589 -144084448 - RLTR9A2 LTR ERVK 0 383 1 6 626 3197 166 70 19 chr6 5432589 5433034 -144084003 + Lx2B LINE L1 6525 7000 0 6 626 32 0 0 0 chr6 5433352 5433384 -144083653 + AT_rich Low_complexity Low_complexity 1 32 0 6 626 887 164 0 6 chr6 5433815 5433987 -144083050 + GA-rich Low_complexity Low_complexity 2 172 0 6 626 243 325 36 0 chr6 5438642 5438725 -144078312 + MER5A1 DNA MER1_type 59 144 -22 6 626 687 304 55 18 chr6 5440255 5440530 -144076507 - L1MB1 LINE L1 -6 6162 5878 6 626 5379 101 40 3 chr6 5443023 5443663 -144073374 + Lx3A LINE L1 6210 6853 -128 6 626 189 0 0 0 chr6 5443663 5443684 -144073353 + (GGGTG)n Simple_repeat Simple_repeat 4 24 0 6 626 5027 101 40 3 chr6 5443684 5443787 -144073250 + Lx3A LINE L1 6854 6979 -2 6 626 330 309 105 8 chr6 5444457 5444581 -144072456 + ID_B1 SINE B4 81 216 -8 6 626 495 0 0 0 chr6 5445714 5445769 -144071268 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 626 207 0 0 0 chr6 5448111 5448134 -144068903 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 6 626 279 0 0 0 chr6 5448143 5448174 -144068863 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 626 24 32 0 0 chr6 5448373 5448404 -144068633 + AT_rich Low_complexity Low_complexity 1 31 0 6 626 187 342 12 37 chr6 5450388 5450470 -144066567 - L2b LINE L2 -8 3367 3288 6 626 191 62 0 59 chr6 5451031 5451065 -144065972 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 6 626 293 252 0 18 chr6 5451200 5451309 -144065728 + GA-rich Low_complexity Low_complexity 4 110 0 6 626 322 345 42 0 chr6 5451680 5451845 -144065192 + L1M5 LINE L1 5574 5745 -379 6 626 550 256 89 56 chr6 5452615 5452884 -144064153 + L1MA8 LINE L1 5559 5836 -455 6 626 535 228 127 33 chr6 5453006 5453251 -144063786 + L1MA8 LINE L1 6003 6270 -21 6 626 240 149 0 0 chr6 5453517 5453564 -144063473 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 626 893 319 65 22 chr6 5454178 5454546 -144062491 + MLT1A1 LTR MaLR 19 402 -6 6 626 3521 21 0 132 chr6 5455839 5456341 -144060696 - RLTR10C LTR ERVK 0 436 1 6 626 225 0 0 0 chr6 5457575 5457600 -144059437 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 6 626 198 103 0 0 chr6 5457642 5457671 -144059366 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 6 626 227 235 109 76 chr6 5457903 5457995 -144059042 - B1_Mus2 SINE Alu -13 134 40 6 626 877 71 156 16 chr6 5460603 5460731 -144056306 + B1_Mm SINE Alu 2 147 0 6 626 26 0 0 0 chr6 5461605 5461631 -144055406 + AT_rich Low_complexity Low_complexity 1 26 0 6 626 208 303 19 83 chr6 5462426 5462534 -144054503 + MIR3 SINE MIR 72 172 -36 6 626 1212 134 11 0 chr6 5462665 5462851 -144054186 + ORR1A4 LTR MaLR 2 189 -140 6 626 1621 195 136 3 chr6 5462843 5463190 -144053847 - RLTR17 LTR ERVK -99 593 201 6 626 306 359 9 70 chr6 5463577 5463691 -144053346 - B3A SINE B2 -61 137 29 6 626 192 238 195 24 chr6 5464357 5464439 -144052598 - L3 LINE CR1 -869 3620 3525 6 626 1194 41 0 7 chr6 5464439 5464587 -144052450 - B1_Mm SINE Alu 0 147 1 6 626 721 193 64 82 chr6 5464799 5465019 -144052018 + MTD LTR MaLR 184 399 -20 6 626 658 310 15 5 chr6 5465468 5465672 -144051365 - ID_B1 SINE B4 -18 206 1 6 626 342 314 96 41 chr6 5465827 5465973 -144051064 - Tigger5 DNA MER2_type -2197 209 56 6 626 225 0 0 0 chr6 5466058 5466083 -144050954 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 626 435 107 0 0 chr6 5466678 5466753 -144050284 + (ACTG)n Simple_repeat Simple_repeat 4 78 0 6 626 188 111 0 27 chr6 5467837 5467874 -144049163 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 6 626 1841 220 65 12 chr6 5468026 5468426 -144048611 - MTC LTR MaLR 0 421 1 6 626 1137 197 196 22 chr6 5468465 5468782 -144048255 - ORR1D1 LTR MaLR -2 372 1 6 626 770 150 27 20 chr6 5468782 5468932 -144048105 - ORR1D1-int LTR MaLR 0 1370 1220 6 626 29 0 0 0 chr6 5468932 5468961 -144048076 + AT_rich Low_complexity Low_complexity 1 29 0 6 626 503 269 13 40 chr6 5469008 5469159 -144047878 + B1F1 SINE Alu 3 149 0 6 626 1642 182 24 0 chr6 5469190 5469531 -144047506 - Lx2B LINE L1 -673 6327 5979 6 626 36457 39 1 3 chr6 5469537 5475878 -144041159 - L1Md_T LINE L1 0 6585 159 6 626 5197 237 55 15 chr6 5475878 5477058 -144039979 - ORR1D1-int LTR MaLR -126 1244 18 6 626 1327 235 91 29 chr6 5477058 5477229 -144039808 - ORR1D1 LTR MaLR -1 373 177 6 626 740 65 9 0 chr6 5477229 5477336 -144039701 + (GA)n Simple_repeat Simple_repeat 2 109 0 6 626 1327 235 91 29 chr6 5477336 5477515 -144039522 - ORR1D1 LTR MaLR -198 176 2 6 626 241 0 75 25 chr6 5477529 5477569 -144039468 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 6 626 1360 168 60 211 chr6 5478456 5478940 -144038097 - RLTR9F LTR ERVK -4 411 1 6 626 2794 64 5 0 chr6 5478969 5479382 -144037655 + L1_Mus4 LINE L1 5555 5969 -667 6 626 2845 108 29 13 chr6 5479382 5479833 -144037204 + L1_Mus4 LINE L1 6179 6636 0 6 626 2938 161 15 9 chr6 5481300 5481825 -144035212 + RLTR11A LTR ERVK 1 528 0 6 626 705 137 0 0 chr6 5482499 5482616 -144034421 + (TG)n Simple_repeat Simple_repeat 2 118 0 6 626 405 271 37 5 chr6 5482713 5482883 -144034154 + L1M4 LINE L1 2688 2860 -3286 6 626 267 245 76 52 chr6 5482965 5483137 -144033900 + L1M4 LINE L1 3019 3194 -2952 6 626 232 235 0 29 chr6 5483364 5483434 -144033603 + L1M4 LINE L1 4745 4812 -1334 6 626 305 313 38 9 chr6 5483517 5483730 -144033307 + L1M4 LINE L1 4943 5161 -985 6 626 820 320 11 3 chr6 5483736 5484021 -144033016 + B4A SINE B4 2 288 -4 6 626 535 267 29 0 chr6 5484072 5484282 -144032755 + L1M4 LINE L1 5160 5375 -771 6 626 1824 266 71 41 chr6 5484426 5485619 -144031418 - Lx9 LINE L1 -735 6909 5476 6 626 350 185 12 0 chr6 5486285 5486366 -144030671 + CT-rich Low_complexity Low_complexity 3 84 0 6 626 695 283 60 26 chr6 5487081 5487346 -144029691 + B4 SINE B4 1 274 -18 6 626 419 313 31 2 chr6 5488923 5489064 -144027973 - B1F SINE Alu -1 148 4 6 626 251 282 13 13 chr6 5489215 5489294 -144027743 - ID4_ SINE ID -2 81 3 6 626 329 273 90 9 chr6 5489304 5489415 -144027622 - PB1D7 SINE Alu 0 120 1 6 626 318 300 67 10 chr6 5489498 5489707 -144027330 + L1M2 LINE L1 5178 5398 -745 6 626 184 59 59 0 chr6 5489718 5489752 -144027285 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 6 626 275 260 19 88 chr6 5489836 5489996 -144027041 + L1M2 LINE L1 5479 5627 -673 6 626 882 294 14 93 chr6 5490017 5490370 -144026667 - ORR1E LTR MaLR 0 359 35 6 626 315 0 0 0 chr6 5490419 5490454 -144026583 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 626 526 264 116 10 chr6 5490480 5490651 -144026386 + MLT1B LTR MaLR 224 390 0 6 626 1473 202 73 30 chr6 5490923 5491291 -144025746 - ORR1D1 LTR MaLR 0 384 1 6 626 4715 219 95 56 chr6 5491292 5492236 -144024801 - ORR1D1-int LTR MaLR -1 1369 427 6 626 1842 185 48 37 chr6 5492236 5492612 -144024425 - ORR1C2 LTR MaLR -4 380 1 6 626 4715 219 95 56 chr6 5492612 5492739 -144024298 - ORR1D1-int LTR MaLR -944 426 292 6 626 351 65 0 0 chr6 5492739 5492785 -144024252 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 6 626 4715 219 95 56 chr6 5492785 5493026 -144024011 - ORR1D1-int LTR MaLR -1079 291 5 6 626 1612 216 21 29 chr6 5493026 5493403 -144023634 - ORR1D1 LTR MaLR 0 374 1 6 626 309 26 0 0 chr6 5493634 5493672 -144023365 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 626 262 218 13 13 chr6 5493884 5493963 -144023074 - L1M5 LINE L1 -335 5789 5711 6 626 556 320 65 38 chr6 5494599 5494784 -144022253 + B3A SINE B2 9 198 0 6 626 380 153 12 0 chr6 5494915 5495000 -144022037 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 626 27519 117 5 5 chr6 5495072 5497328 -144019709 + L1_Mm LINE L1 1340 3592 -2291 6 626 3241 51 13 0 chr6 5497328 5497719 -144019318 + MTA_Mm LTR MaLR 1 396 0 6 626 27519 117 5 5 chr6 5497719 5499937 -144017100 + L1_Mm LINE L1 3593 5817 -66 6 626 858 162 11 22 chr6 5500731 5501007 -144016030 + GA-rich Low_complexity Low_complexity 1 272 0 1 626 390 21 0 0 chr6 5502079 5502126 -144014911 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 2 626 1037 140 6 0 chr6 5502126 5502304 -144014733 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 3 626 312 250 0 0 chr6 5502382 5502450 -144014587 - B4A SINE B4 -223 69 2 4 626 462 319 77 31 chr6 5504124 5504383 -144012654 - MamRep605 Unknown Unknown -236 640 370 5 626 1279 69 0 0 chr6 5504456 5504616 -144012421 + L1_Mus1 LINE L1 6408 6567 0 6 78 539 325 100 17 chr6 5504885 5505364 -144011673 - L1ME3B LINE L1 -398 5842 5324 7 627 229 301 86 72 chr6 5505916 5506220 -144010817 - L1ME3B LINE L1 -1476 4670 4363 7 627 664 194 21 69 chr6 5506234 5506378 -144010659 + B1F SINE Alu 13 149 0 8 627 1684 32 21 0 chr6 5506440 5506628 -144010409 - B2_Mm1a SINE B2 0 193 2 9 627 1481 68 26 16 chr6 5506843 5507036 -144010001 - B2_Mm2 SINE B2 0 195 1 1 627 252 230 10 112 chr6 5507556 5507654 -144009383 + RLTR25B LTR ERVK 434 521 -507 1 627 657 101 0 48 chr6 5507566 5507670 -144009367 + B1_Mus2 SINE Alu 43 141 -6 1 627 211 231 19 19 chr6 5507670 5507723 -144009314 + GA-rich Low_complexity Low_complexity 3 55 0 1 627 270 138 0 0 chr6 5508360 5508418 -144008619 + (T)n Simple_repeat Simple_repeat 1 58 0 1 627 511 188 99 0 chr6 5508418 5508519 -144008518 - PB1D9 SINE Alu 0 120 10 1 627 287 287 26 105 chr6 5508434 5508446 -144008591 - MT2B LTR ERVL -354 247 226 1 627 303 317 61 0 chr6 5508446 5508528 -144008509 - B4A SINE B4 -123 169 83 1 627 287 287 26 105 chr6 5508528 5508586 -144008451 - MT2B LTR ERVL -354 225 108 1 627 1459 193 201 98 chr6 5508616 5508854 -144008183 + RLTR31A_Mm LTR ERVK 1 266 -318 1 627 1163 53 20 7 chr6 5508854 5509006 -144008031 + L1Md_F3 LINE L1 6429 6582 -2 1 627 1459 193 201 98 chr6 5509006 5509295 -144007742 + RLTR31A_Mm LTR ERVK 267 582 -2 1 627 28 29 0 0 chr6 5510141 5510176 -144006861 + AT_rich Low_complexity Low_complexity 1 35 0 2 627 560 221 27 0 chr6 5510195 5510344 -144006693 - Lx9 LINE L1 -10 7634 7482 2 627 1228 255 52 0 chr6 5510351 5510676 -144006361 + Lx9 LINE L1 7089 7430 -214 2 627 396 0 0 0 chr6 5510815 5510859 -144006178 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 627 793 312 122 5 chr6 5512148 5512589 -144004448 - Charlie4a DNA MER1_type 0 508 16 2 627 401 271 151 66 chr6 5514025 5514191 -144002846 + B3A SINE B2 4 183 -15 2 627 23 0 0 0 chr6 5514202 5514225 -144002812 + AT_rich Low_complexity Low_complexity 1 23 0 2 627 733 272 38 24 chr6 5514597 5514808 -144002229 - B3 SINE B2 0 216 3 2 627 206 304 216 9 chr6 5515449 5515565 -144001472 + MIRc SINE MIR 88 227 -41 2 627 1531 256 124 47 chr6 5518267 5519055 -143997982 + L1MC2 LINE L1 5280 6128 -216 2 627 459 276 71 16 chr6 5519107 5519291 -143997746 + L1MA4A LINE L1 5696 5889 -414 2 627 318 233 0 0 chr6 5519505 5519565 -143997472 - L1MC LINE L1 -1055 5091 5032 3 627 1121 312 80 28 chr6 5519783 5520284 -143996753 + LTR80A LTR ERVL 56 582 -1 3 627 4537 51 49 0 chr6 5520567 5521114 -143995923 - L1Md_F2 LINE L1 0 6582 6009 3 627 300 222 0 0 chr6 5521473 5521545 -143995492 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 627 912 267 86 16 chr6 5521558 5521813 -143995224 - B4A SINE B4 -1 291 19 3 627 181 155 35 0 chr6 5522098 5522156 -143994881 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 627 351 281 76 23 chr6 5522738 5522869 -143994168 - L1M3a LINE L1 -5051 904 767 3 627 504 300 93 12 chr6 5523073 5523245 -143993792 - B3A SINE B2 -6 192 7 3 627 251 259 16 136 chr6 5523524 5523649 -143993388 + MT2B LTR ERVL 156 265 -336 3 627 502 293 16 0 chr6 5523537 5523660 -143993377 + B1_Mur1 SINE Alu 2 126 -23 3 627 365 202 56 0 chr6 5523873 5523962 -143993075 + MIRb SINE MIR 175 268 0 4 627 323 281 174 34 chr6 5525560 5525796 -143991241 - L1MA6 LINE L1 -20 6280 6012 4 627 2710 109 12 31 chr6 5526706 5527123 -143989914 - RLTR9E LTR ERVK 0 409 1 4 627 380 257 155 10 chr6 5527225 5527418 -143989619 + MLT1A LTR MaLR 110 330 -44 4 627 361 240 35 0 chr6 5527697 5527796 -143989241 + PB1D7 SINE Alu 19 120 0 4 627 1238 43 0 0 chr6 5527831 5527972 -143989065 + B1_Mm SINE Alu 1 141 -6 4 627 723 54 0 0 chr6 5527974 5528066 -143988971 + (GAAA)n Simple_repeat Simple_repeat 3 94 0 4 627 1119 212 14 0 chr6 5528166 5528378 -143988659 + B3 SINE B2 2 216 0 4 627 21 36 0 0 chr6 5528467 5528495 -143988542 + AT_rich Low_complexity Low_complexity 1 28 0 4 627 640 280 140 2 chr6 5528570 5528788 -143988249 + B4A SINE B4 27 272 -20 4 627 252 86 0 0 chr6 5528792 5528827 -143988210 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 627 1051 228 5 23 chr6 5530158 5530374 -143986663 - B3 SINE B2 -4 212 1 5 627 775 233 120 11 chr6 5530529 5530720 -143986317 + B3 SINE B2 4 215 -1 5 627 200 34 0 33 chr6 5532113 5532143 -143984894 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 5 627 1661 210 72 52 chr6 5533590 5533976 -143983061 - Lx5 LINE L1 0 7050 6657 5 627 196 28 0 77 chr6 5537074 5537113 -143979924 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 5 627 382 358 62 29 chr6 5537159 5537467 -143979570 + L1MC4a LINE L1 5512 5829 -2053 5 627 369 0 0 0 chr6 5538525 5538566 -143978471 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 627 314 193 0 17 chr6 5538576 5538634 -143978403 + HAL1-3A_ME LINE L1 1977 2033 -825 5 627 265 75 0 36 chr6 5538756 5538811 -143978226 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 5 627 225 0 0 0 chr6 5538818 5538843 -143978194 + (CCAA)n Simple_repeat Simple_repeat 2 26 0 6 627 1206 42 14 0 chr6 5539478 5539622 -143977415 + B1_Mus2 SINE Alu 2 147 0 6 627 185 245 119 30 chr6 5540139 5540240 -143976797 + MIR SINE MIR 123 232 -30 6 627 3172 109 7 3 chr6 5540595 5541146 -143975891 - Lx LINE L1 -679 5957 5403 6 627 4861 97 38 8 chr6 5541149 5541812 -143975225 + Lx LINE L1 5960 6642 -12 6 627 921 44 0 0 chr6 5541812 5541926 -143975111 + (GAAA)n Simple_repeat Simple_repeat 2 115 0 6 627 537 58 0 0 chr6 5543185 5543254 -143973783 + (TATG)n Simple_repeat Simple_repeat 4 72 0 6 627 243 0 0 0 chr6 5543575 5543602 -143973435 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 627 260 312 106 59 chr6 5544025 5544195 -143972842 + MLT1K LTR MaLR 45 222 -373 6 627 244 341 85 0 chr6 5544998 5545080 -143971957 + MLT1K-int LTR MaLR 1203 1291 -96 6 627 1042 270 67 117 chr6 5545744 5546469 -143970568 + MER44D DNA MER2_type 7 674 -31 6 627 510 17 0 0 chr6 5546647 5546706 -143970331 + (GA)n Simple_repeat Simple_repeat 1 59 0 6 627 282 310 84 48 chr6 5546751 5546967 -143970070 + LTR33A_ LTR ERVL 256 495 -36 7 627 806 284 0 45 chr6 5547146 5547345 -143969692 - B3A SINE B2 -2 196 7 7 627 315 232 0 0 chr6 5547558 5547640 -143969397 + G-rich Low_complexity Low_complexity 2 83 0 7 627 492 166 0 0 chr6 5549065 5549204 -143967833 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 7 627 227 354 89 53 chr6 5549628 5549932 -143967105 + LTR33 LTR ERVL 198 512 -3 7 627 442 273 102 6 chr6 5550037 5550203 -143966834 + MIR SINE MIR 80 261 -1 7 627 9540 138 34 22 chr6 5550534 5552896 -143964141 - Lx2A1 LINE L1 -6 7002 4613 7 627 5785 133 46 0 chr6 5552893 5553845 -143963192 + Lx2A1 LINE L1 3461 4456 -1421 7 627 1777 37 0 5 chr6 5553845 5554065 -143962972 - RLTRETN_Mm LTR ERVK 0 322 104 7 627 235 152 0 21 chr6 5554214 5554261 -143962776 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 7 627 282 246 0 62 chr6 5554441 5554506 -143962531 + tRNA-Ala-GCY_ tRNA tRNA 6 66 -9 7 627 279 218 0 0 chr6 5555073 5555128 -143961909 - Lx9 LINE L1 -785 6859 6805 8 627 1602 204 73 84 chr6 5555315 5555537 -143961500 - Lx9 LINE L1 -1664 5980 5729 8 627 2286 99 24 60 chr6 5555537 5555869 -143961168 - ORR1A2 LTR MaLR -3 324 5 8 627 1602 176 62 86 chr6 5555869 5556126 -143960911 - Lx9 LINE L1 -119 5728 5471 8 627 3958 163 39 1 chr6 5556280 5556956 -143960081 - Lx5 LINE L1 -28 5849 5149 8 627 5300 193 72 22 chr6 5556959 5558056 -143958981 + Lx5 LINE L1 5896 7047 -3 8 627 2151 97 11 68 chr6 5558057 5558412 -143958625 - IAPLTR1a_Mm LTR ERVK -2 335 1 8 627 59386 10 4 2 chr6 5558412 5564882 -143952155 - IAPEz-int LTR ERVK 0 6481 1 8 627 1963 98 3 69 chr6 5564883 5565232 -143951805 - IAPLTR1a_Mm LTR ERVK -11 326 1 8 627 23 0 0 0 chr6 5565399 5565422 -143951615 + AT_rich Low_complexity Low_complexity 1 23 0 8 627 198 91 0 0 chr6 5565466 5565499 -143951538 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 8 627 290 310 30 83 chr6 5565501 5565670 -143951367 + MER58A DNA MER1_type 65 224 0 8 627 433 280 44 28 chr6 5565753 5565933 -143951104 - L1MC LINE L1 -1992 4154 3972 8 627 857 284 32 39 chr6 5566101 5566383 -143950654 + MTE2a LTR MaLR 34 313 -66 8 627 388 279 133 49 chr6 5566495 5567030 -143950007 - L1MD LINE L1 -2424 3722 3143 8 627 449 324 7 52 chr6 5567324 5567477 -143949560 + B3A SINE B2 1 146 -52 9 627 255 61 0 0 chr6 5567482 5567515 -143949522 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 627 1337 24 12 0 chr6 5567515 5567678 -143949359 + (GGGAGA)n Simple_repeat Simple_repeat 4 169 0 9 627 7944 60 15 2 chr6 5568395 5569606 -143947431 - L1_Mus1 LINE L1 0 6567 5344 9 627 486 319 46 50 chr6 5570176 5570340 -143946697 - L1MA8 LINE L1 -26 6274 6106 9 627 486 0 0 0 chr6 5570340 5570394 -143946643 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 9 627 1167 44 0 0 chr6 5570394 5570530 -143946507 - B1_Mus2 SINE Alu -10 137 2 9 627 486 319 46 50 chr6 5570530 5570687 -143946350 - L1MA8 LINE L1 -195 6105 5954 9 627 512 176 7 22 chr6 5570689 5570828 -143946209 + CT-rich Low_complexity Low_complexity 2 138 0 9 627 412 277 11 0 chr6 5570906 5571000 -143946037 - ID_B1 SINE B4 -120 104 10 9 627 960 264 117 17 chr6 5571459 5571871 -143945166 - L1MA8 LINE L1 -378 5913 5461 9 627 378 0 0 0 chr6 5571919 5571961 -143945076 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 9 627 1424 182 93 23 chr6 5571961 5572304 -143944733 - Lx4B LINE L1 -19 7039 6673 1 627 1338 168 62 17 chr6 5572297 5572464 -143944573 + Lx4B LINE L1 5849 6019 -1039 1 627 3908 117 7 2 chr6 5572464 5573028 -143944009 - RMER2 LTR ERV1 0 567 1 1 627 1338 168 62 17 chr6 5573028 5573150 -143943887 + Lx4B LINE L1 6020 6151 -907 1 627 1851 177 79 63 chr6 5573166 5573595 -143943442 + RLTR25B LTR ERVK 11 446 -657 1 627 632 244 16 0 chr6 5573595 5573718 -143943319 + ETnERV2-int LTR ERVK 7078 7202 -204 1 627 2713 168 36 45 chr6 5574108 5574714 -143942323 + RLTR25B LTR ERVK 428 1028 0 1 627 2614 171 67 2 chr6 5574721 5575201 -143941836 + Lx4B LINE L1 6177 6687 -371 1 627 314 234 71 84 chr6 5575199 5575353 -143941684 - L1MA8 LINE L1 -836 5476 5325 9 627 11677 91 8 5 chr6 5575356 5576672 -143940365 + L1_Mus1 LINE L1 4049 5373 -510 1 627 3237 56 5 8 chr6 5576672 5577069 -143939968 + MTA_Mm LTR MaLR 1 396 0 1 627 11677 91 8 5 chr6 5577069 5577359 -143939678 + L1_Mus1 LINE L1 5374 5659 -224 1 627 6552 54 2 6 chr6 5577359 5578161 -143938876 + L1_Mus1 LINE L1 5769 6567 0 1 627 530 282 89 23 chr6 5578204 5578418 -143938619 + B4A SINE B4 9 236 -56 1 627 1458 208 92 0 chr6 5578432 5578769 -143938268 + ORR1C1 LTR MaLR 11 378 0 1 627 513 0 0 0 chr6 5578850 5578907 -143938130 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 627 1095 274 119 32 chr6 5578924 5579494 -143937543 - L1MA8 LINE L1 -850 5293 4674 9 627 305 297 46 15 chr6 5579496 5579626 -143937411 - B4A SINE B4 -149 143 10 1 627 538 229 31 50 chr6 5579901 5580062 -143936975 - MTE-int LTR MaLR -138 1442 1285 1 627 24 0 0 0 chr6 5580084 5580108 -143936929 + AT_rich Low_complexity Low_complexity 1 24 0 1 627 3404 35 2 5 chr6 5580111 5580508 -143936529 + MTA_Mm LTR MaLR 1 396 0 1 627 7562 76 23 72 chr6 5580508 5581662 -143935375 + MTA_Mm-int LTR MaLR 1 1098 0 1 627 3399 33 2 5 chr6 5581662 5582059 -143934978 + MTA_Mm LTR MaLR 1 396 0 1 627 24 0 0 0 chr6 5582070 5582094 -143934943 + AT_rich Low_complexity Low_complexity 1 24 0 1 627 541 146 11 0 chr6 5582136 5582225 -143934812 - B3 SINE B2 -93 123 34 1 627 392 297 0 0 chr6 5582404 5582522 -143934515 - L1MA8 LINE L1 -3131 3012 2895 9 627 695 262 0 12 chr6 5582555 5582717 -143934320 + B3 SINE B2 2 161 -55 1 627 289 211 0 0 chr6 5582743 5582800 -143934237 + PB1D9 SINE Alu 2 58 -62 1 627 23 54 0 0 chr6 5585332 5585369 -143931668 + AT_rich Low_complexity Low_complexity 1 37 0 1 627 226 236 18 0 chr6 5585701 5585756 -143931281 + L1ME1 LINE L1 5698 5753 -426 1 627 369 0 0 0 chr6 5585909 5585950 -143931087 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1 627 657 293 12 121 chr6 5586103 5586425 -143930612 + B4 SINE B4 5 291 -1 1 627 274 255 75 65 chr6 5586493 5586694 -143930343 + L1ME1 LINE L1 5760 5962 -217 1 627 2193 95 44 9 chr6 5587265 5587583 -143929454 - ORR1A4 LTR MaLR 0 329 1 1 627 796 299 42 39 chr6 5587734 5588093 -143928944 + Lx9 LINE L1 7105 7464 -180 1 627 423 98 0 0 chr6 5588093 5588154 -143928883 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 627 190 229 70 14 chr6 5588277 5588348 -143928689 + MIR3 SINE MIR 112 186 -22 1 627 369 299 0 0 chr6 5588484 5588651 -143928386 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 627 300 307 0 0 chr6 5588691 5588841 -143928196 + (CA)n Simple_repeat Simple_repeat 1 150 0 1 627 366 305 0 0 chr6 5588857 5589021 -143928016 + (CA)n Simple_repeat Simple_repeat 1 164 0 1 627 204 304 0 0 chr6 5589037 5589129 -143927908 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 627 696 171 32 0 chr6 5589304 5589427 -143927610 - B1_Mus2 SINE Alu -20 127 1 1 627 928 0 18 0 chr6 5589455 5589567 -143927470 + (TCTA)n Simple_repeat Simple_repeat 4 117 0 1 627 1039 130 35 0 chr6 5589569 5589738 -143927299 - Lx3A LINE L1 -10 6971 6797 1 627 957 101 0 0 chr6 5590332 5590471 -143926566 + (TCCCC)n Simple_repeat Simple_repeat 2 140 0 1 627 399 157 0 0 chr6 5590485 5590555 -143926482 + T-rich Low_complexity Low_complexity 1 70 0 1 627 423 0 0 0 chr6 5590565 5590612 -143926425 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 627 838 151 7 7 chr6 5590612 5590749 -143926288 - B1_Mus1 SINE Alu -10 138 1 1 627 681 227 11 32 chr6 5590749 5590789 -143926248 - ID_B1 SINE B4 -10 214 41 1 627 339 216 0 0 chr6 5591389 5591500 -143925537 + C-rich Low_complexity Low_complexity 1 111 0 1 627 438 381 79 26 chr6 5592582 5592922 -143924115 + MER92B LTR ERV1 126 483 -153 1 627 4425 210 112 109 chr6 5593345 5594779 -143922258 + Lx7 LINE L1 6260 7696 0 1 627 2000 175 8 13 chr6 5595120 5595508 -143921529 + ORR1B1 LTR MaLR 1 386 -8 1 627 2068 190 20 0 chr6 5596639 5597044 -143919993 - L1_Mm LINE L1 -741 5142 4730 1 627 35151 73 7 4 chr6 5597055 5603430 -143913607 - L1Md_F2 LINE L1 -2 6580 193 1 627 494 333 0 0 chr6 5603663 5603816 -143913221 - RSINE1 SINE B4 -4 161 9 1 627 302 263 67 48 chr6 5603844 5603948 -143913089 - L1MC LINE L1 -2062 5820 5715 1 627 218 130 0 61 chr6 5603998 5604047 -143912990 + (TGG)n Simple_repeat Simple_repeat 2 47 0 1 627 1355 226 118 110 chr6 5605030 5605522 -143911515 - Lx5 LINE L1 -2 7048 6553 1 627 2680 183 141 21 chr6 5605522 5606113 -143910924 - RMER19A LTR ERVK 0 737 65 1 627 3612 10 2 0 chr6 5606113 5606508 -143910529 + MTA_Mm LTR MaLR 1 396 0 1 627 9610 19 6 3 chr6 5606508 5607602 -143909435 + MTA_Mm-int LTR MaLR 1 1098 0 1 627 3606 10 2 0 chr6 5607602 5607997 -143909040 + MTA_Mm LTR MaLR 1 396 0 1 627 2680 183 141 21 chr6 5607997 5608061 -143908976 - RMER19A LTR ERVK -673 64 3 1 627 11871 168 31 9 chr6 5608061 5610692 -143906345 - Lx5 LINE L1 -492 6558 3841 1 627 430 48 0 0 chr6 5610907 5610969 -143906068 - L1MD2 LINE L1 -1 6358 6297 1 627 291 208 0 0 chr6 5610978 5611029 -143906008 + polypurine Low_complexity Low_complexity 1 51 0 1 627 4437 24 0 0 chr6 5611029 5611522 -143905515 - MT2_Mm LTR ERVL 0 493 1 1 627 291 208 0 0 chr6 5611522 5611542 -143905495 + polypurine Low_complexity Low_complexity 52 71 0 1 627 521 301 35 5 chr6 5611554 5611754 -143905283 - L1MD1 LINE L1 -97 6145 5940 1 627 292 297 0 11 chr6 5611766 5611858 -143905179 - L1MD1 LINE L1 -500 5859 5769 1 627 1055 126 7 3 chr6 5612053 5612347 -143904690 + (TTTC)n Simple_repeat Simple_repeat 1 294 0 1 627 381 292 17 0 chr6 5612718 5612838 -143904199 + L1MA9 LINE L1 5656 5777 -391 1 627 234 0 0 0 chr6 5612848 5612874 -143904163 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 627 568 94 16 41 chr6 5612874 5612996 -143904041 + GA-rich Low_complexity Low_complexity 5 123 0 1 627 547 228 69 0 chr6 5613002 5613147 -143903890 + L1MA9 LINE L1 5794 5948 -364 1 627 183 100 0 0 chr6 5613197 5613227 -143903810 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 627 318 310 63 88 chr6 5614442 5614601 -143902436 - B4A SINE B4 -116 176 22 1 627 1105 98 11 6 chr6 5614818 5614992 -143902045 + (TTCCC)n Simple_repeat Simple_repeat 2 176 0 1 627 755 321 76 43 chr6 5615021 5615298 -143901739 - B4 SINE B4 0 292 7 1 627 481 286 91 1 chr6 5615805 5616013 -143901024 - L1MA4 LINE L1 -382 5918 5692 1 627 924 263 58 124 chr6 5616020 5616471 -143900566 - RLTR23 LTR ERV1 0 430 10 1 627 815 325 79 24 chr6 5616524 5617116 -143899921 - L1_Mur3 LINE L1 -165 5715 5091 1 627 249 237 1 16 chr6 5617144 5617229 -143899808 - L1MA4 LINE L1 -1158 4982 4846 1 627 961 318 77 30 chr6 5617227 5617762 -143899275 - L1MA4 LINE L1 -1856 4287 3728 1 627 1926 212 56 3 chr6 5618011 5618673 -143898364 + Lx6 LINE L1 892 1593 -4284 1 627 866 199 210 0 chr6 5618673 5618849 -143898188 + B3 SINE B2 1 213 -3 1 627 10203 165 35 9 chr6 5619958 5621048 -143895989 + Lx6 LINE L1 2527 3644 -2233 1 627 659 12 12 0 chr6 5621048 5621128 -143895909 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 627 10203 165 35 9 chr6 5621128 5621992 -143895045 + Lx6 LINE L1 3645 4530 -1347 1 627 2438 111 31 93 chr6 5622008 5622536 -143894501 + RLTR1B LTR ERV1 1 512 0 1 627 1132 225 27 8 chr6 5622538 5622798 -143894239 + Lx6 LINE L1 4552 4816 -1061 1 627 4445 135 43 18 chr6 5622802 5623340 -143893697 - Lx4A LINE L1 0 7058 6503 1 627 2667 92 75 10 chr6 5623340 5623724 -143893313 + RLTR9E LTR ERVK 1 409 0 1 627 4445 135 43 18 chr6 5623724 5623865 -143893172 - Lx4A LINE L1 -556 6502 6362 1 627 340 253 31 21 chr6 5624372 5624469 -143892568 + RLTR23 LTR ERV1 333 430 0 1 627 1108 212 8 23 chr6 5624469 5624790 -143892247 - L1_Mur2 LINE L1 -6408 304 42 1 627 6839 207 60 21 chr6 5624835 5626602 -143890435 + Lx6 LINE L1 4828 6638 -822 1 627 2776 41 28 3 chr6 5626602 5626921 -143890116 + IAPLTR2b LTR ERVK 1 327 0 1 627 6839 244 67 35 chr6 5626921 5627675 -143889362 + Lx6 LINE L1 6639 7456 -4 1 627 901 301 74 51 chr6 5627840 5628117 -143888920 + L1ME3 LINE L1 5317 5612 -550 1 627 1909 196 164 72 chr6 5628117 5628159 -143888878 - MT2A LTR ERVL 0 533 485 1 627 447 19 0 0 chr6 5628159 5628211 -143888826 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 627 1909 196 164 72 chr6 5628211 5628656 -143888381 - MT2A LTR ERVL -49 484 2 1 627 901 301 74 51 chr6 5628656 5628983 -143888054 + L1ME3 LINE L1 5613 5935 -227 1 627 802 173 38 19 chr6 5629093 5629276 -143887761 - B3 SINE B2 0 195 1 1 627 21 36 0 0 chr6 5629328 5629356 -143887681 + AT_rich Low_complexity Low_complexity 1 28 0 1 627 259 288 24 16 chr6 5629363 5629490 -143887547 + L1M5 LINE L1 3829 3956 -2190 1 627 224 0 0 61 chr6 5629492 5629525 -143887512 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 627 341 161 0 51 chr6 5629539 5629598 -143887439 + B3A SINE B2 1 56 -142 1 627 222 37 0 0 chr6 5629771 5629798 -143887239 + (CAG)n Simple_repeat Simple_repeat 3 29 0 1 627 784 215 228 12 chr6 5629836 5630095 -143886942 - RLTR28B LTR ERVL -166 315 1 1 627 871 231 164 40 chr6 5630379 5630708 -143886329 - ORR1D2 LTR MaLR 0 370 1 1 627 285 281 130 22 chr6 5630968 5631106 -143885931 + L1M3 LINE L1 3588 3740 -2400 1 627 4815 228 47 39 chr6 5631128 5632847 -143884190 - Lx5 LINE L1 -18 7032 5298 1 627 7882 64 26 14 chr6 5633243 5634271 -143882766 - L1_Mus1 LINE L1 0 6567 5559 1 627 1730 138 107 42 chr6 5634348 5634733 -143882304 - RMER17C LTR ERVK 0 410 1 1 627 252 0 0 0 chr6 5634755 5634783 -143882254 + (T)n Simple_repeat Simple_repeat 1 28 0 1 627 1196 68 7 0 chr6 5634783 5634929 -143882108 - B1_Mus2 SINE Alu 0 147 1 1 627 24 0 0 0 chr6 5635002 5635026 -143882011 + AT_rich Low_complexity Low_complexity 1 24 0 1 627 261 301 70 33 chr6 5635035 5635248 -143881789 - L1M5 LINE L1 -1573 4573 4353 1 627 270 170 19 19 chr6 5635709 5635763 -143881274 - BC1_Mm scRNA scRNA -98 54 1 1 627 474 313 111 39 chr6 5635865 5635992 -143881045 - RSINE1 SINE B4 0 165 23 1 78 3454 41 5 5 chr6 5635992 5636388 -143880649 + MTA_Mm LTR MaLR 1 396 0 1 628 474 313 111 39 chr6 5636388 5636413 -143880624 - RSINE1 SINE B4 -143 22 2 1 628 245 297 63 0 chr6 5636848 5636959 -143880078 - L1MC LINE L1 -1330 4816 4699 1 628 1044 186 98 179 chr6 5637443 5637829 -143879208 + ORR1D1 LTR MaLR 1 355 -19 1 628 275 156 0 38 chr6 5637834 5637914 -143879123 + A-rich Low_complexity Low_complexity 1 77 0 1 628 563 321 123 5 chr6 5638127 5638346 -143878691 - B4 SINE B4 -2 290 46 1 628 562 333 0 0 chr6 5638559 5638800 -143878237 + (CA)n Simple_repeat Simple_repeat 1 241 0 1 628 3567 188 38 27 chr6 5639095 5639443 -143877594 + Lx5 LINE L1 6282 6632 -418 1 628 396 0 0 0 chr6 5639443 5639487 -143877550 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 2 628 3567 188 38 27 chr6 5639487 5639878 -143877159 + Lx5 LINE L1 6633 7029 -21 1 628 198 71 0 0 chr6 5639878 5639906 -143877131 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2 628 23 54 0 0 chr6 5639945 5639982 -143877055 + AT_rich Low_complexity Low_complexity 1 37 0 2 628 285 286 144 39 chr6 5640173 5640355 -143876682 + L1M5 LINE L1 2265 2473 -3673 2 628 2256 211 12 14 chr6 5640355 5640777 -143876260 - MTC LTR MaLR 0 421 1 2 628 285 286 144 39 chr6 5640777 5640878 -143876159 + L1M5 LINE L1 2474 2578 -3568 2 628 1559 179 67 25 chr6 5641098 5641413 -143875624 + ORR1B1 LTR MaLR 1 328 -66 2 628 7855 68 10 3 chr6 5641413 5642867 -143874170 + L1_Mus1 LINE L1 5113 6654 0 2 628 203 119 71 0 chr6 5642868 5642910 -143874127 + A-rich Low_complexity Low_complexity 2 46 0 2 628 596 230 22 29 chr6 5642936 5643075 -143873962 + B1_Mur1 SINE Alu 12 149 0 2 628 251 189 25 63 chr6 5643160 5643239 -143873798 + ORR1B1 LTR MaLR 234 309 -85 2 628 1206 330 44 58 chr6 5643342 5643838 -143873199 - MTE-int LTR MaLR -331 1249 761 2 628 1865 141 58 88 chr6 5643841 5644206 -143872831 - ORR1B1 LTR MaLR 0 394 41 2 628 599 292 57 47 chr6 5644219 5644431 -143872606 - MTE-int LTR MaLR -824 756 543 2 628 1089 203 37 63 chr6 5644446 5644714 -143872323 + Lx5 LINE L1 6785 7045 -5 2 628 1468 260 95 32 chr6 5644734 5644928 -143872109 - MTE-int LTR MaLR -1081 499 276 2 628 3283 66 2 5 chr6 5644928 5645325 -143871712 - MTA_Mm LTR MaLR 0 396 1 2 628 1468 260 95 32 chr6 5645325 5645591 -143871446 - MTE-int LTR MaLR -1305 275 10 2 628 424 314 16 8 chr6 5645756 5645881 -143871156 - ORR1E LTR MaLR -233 126 1 2 628 5464 141 18 6 chr6 5645892 5646724 -143870313 - MERVL_2A-int LTR ERVL -1292 4193 3352 2 628 2179 101 9 3 chr6 5646724 5647041 -143869996 + ORR1A2 LTR MaLR 1 319 -8 2 628 10139 143 28 7 chr6 5647045 5648809 -143868228 - MERVL_2A-int LTR ERVL -2129 3356 1556 2 628 3685 195 5 55 chr6 5648807 5649610 -143867427 - MERVL_2A-int LTR ERVL -4886 875 1 2 628 2130 138 3 58 chr6 5649610 5649955 -143867082 - ORR1A3 LTR MaLR 0 326 1 2 628 378 344 41 77 chr6 5650018 5650188 -143866849 - ORR1E LTR MaLR -205 169 6 2 628 238 236 22 33 chr6 5650195 5650287 -143866750 - L1M2 LINE L1 -1328 4815 4725 2 628 620 327 47 17 chr6 5651146 5651445 -143865592 - Lx8 LINE L1 -377 7096 6789 2 628 2471 274 83 173 chr6 5651749 5652613 -143864424 - L1M2 LINE L1 -11 5836 5044 2 628 595 214 55 16 chr6 5652613 5652741 -143864296 + B3 SINE B2 2 134 -82 2 628 2471 274 83 173 chr6 5652741 5653481 -143863556 - L1M2 LINE L1 -11 5043 4363 2 628 847 108 146 8 chr6 5653481 5653611 -143863426 - B1_Mus1 SINE Alu 0 148 1 2 628 2471 276 55 96 chr6 5653611 5654819 -143862218 - L1M2 LINE L1 -1751 4392 3209 2 628 221 305 49 0 chr6 5654847 5655011 -143862026 + (CAGGC)n Simple_repeat Simple_repeat 2 173 0 2 628 238 309 42 0 chr6 5655056 5655221 -143861816 + (CAGGC)n Simple_repeat Simple_repeat 2 173 0 2 628 265 288 49 0 chr6 5655248 5655411 -143861626 + (CAGGC)n Simple_repeat Simple_repeat 3 173 0 2 628 297 284 49 0 chr6 5655532 5656039 -143860998 + (CAGGC)n Simple_repeat Simple_repeat 1 531 0 2 628 320 271 47 0 chr6 5656083 5656253 -143860784 + (CGAGG)n Simple_repeat Simple_repeat 3 180 0 2 628 515 117 0 0 chr6 5656942 5657019 -143860018 + RLTR31_Mur LTR ERVK 1 77 -476 2 628 7471 119 23 20 chr6 5657019 5657946 -143859091 - L1_Mm LINE L1 -750 5133 4204 2 628 2265 135 123 8 chr6 5657946 5658305 -143858732 + RLTR9D LTR ERVK 1 400 -3 2 628 7471 119 23 20 chr6 5658305 5658555 -143858482 - L1_Mm LINE L1 -1680 4203 3953 2 628 1225 82 0 0 chr6 5659073 5659220 -143857817 + B1_Mm SINE Alu 1 147 0 2 628 306 194 0 0 chr6 5659220 5659282 -143857755 + A-rich Low_complexity Low_complexity 1 62 0 2 628 608 123 9 0 chr6 5659692 5659806 -143857231 - L1_Mus4 LINE L1 -7 6629 6515 2 628 216 97 0 0 chr6 5660596 5660627 -143856410 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 2 628 22 0 0 0 chr6 5661174 5661196 -143855841 + AT_rich Low_complexity Low_complexity 1 22 0 2 628 347 264 44 9 chr6 5661278 5661412 -143855625 - L1M4b LINE L1 -4886 2448 2367 2 628 412 32 16 16 chr6 5661417 5661480 -143855557 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2 628 538 250 317 0 chr6 5661491 5661655 -143855382 - B3 SINE B2 0 216 1 2 628 452 18 18 0 chr6 5661848 5661905 -143855132 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 628 297 0 0 0 chr6 5662997 5663030 -143854007 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 628 507 95 0 0 chr6 5663230 5663304 -143853733 + (GA)n Simple_repeat Simple_repeat 2 75 0 2 628 222 155 86 0 chr6 5663313 5663371 -143853666 + GA-rich Low_complexity Low_complexity 1 63 0 2 628 256 369 56 6 chr6 5663439 5663600 -143853437 - MIR SINE MIR -19 243 75 2 628 1001 238 90 90 chr6 5663791 5664170 -143852867 + MTEa LTR MaLR 1 379 0 2 628 214 333 0 0 chr6 5664253 5664304 -143852733 + L2c LINE L2 3328 3378 -9 2 628 247 186 98 33 chr6 5664650 5664711 -143852326 + tRNA-Ala-GCA tRNA tRNA 4 68 -7 2 628 267 189 0 0 chr6 5664878 5664931 -143852106 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 2 628 219 69 0 0 chr6 5666436 5666465 -143850572 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 628 450 0 0 0 chr6 5666689 5666739 -143850298 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 2 628 495 0 0 0 chr6 5666912 5666967 -143850070 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 628 596 194 96 8 chr6 5666974 5667099 -143849938 + B1_Mur4 SINE Alu 15 150 0 2 628 348 77 0 0 chr6 5667115 5667167 -143849870 + (ATG)n Simple_repeat Simple_repeat 2 53 0 2 628 243 196 0 56 chr6 5667193 5667247 -143849790 + PB1D10 SINE Alu 53 103 -14 2 628 768 22 0 0 chr6 5667800 5667890 -143849147 + (TG)n Simple_repeat Simple_repeat 1 90 0 2 628 521 282 242 6 chr6 5669021 5669199 -143847838 - ID_B1 SINE B4 -4 220 1 2 628 507 17 0 0 chr6 5669289 5669349 -143847688 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 628 541 277 14 0 chr6 5670188 5670329 -143846708 + ORR1E LTR MaLR 7 149 -210 2 628 266 289 10 104 chr6 5670339 5670735 -143846302 + G-rich Low_complexity Low_complexity 1 359 0 2 628 768 257 188 19 chr6 5670801 5671067 -143845970 + ORR1D2 LTR MaLR 60 370 0 2 628 665 282 76 19 chr6 5671297 5671611 -143845426 + L1MC LINE L1 4898 5229 -917 2 628 949 311 34 28 chr6 5671642 5672115 -143844922 + L1MC LINE L1 5291 5766 -2229 2 628 1227 75 0 0 chr6 5672146 5672293 -143844744 + B1_Mus1 SINE Alu 2 148 0 2 628 206 83 56 0 chr6 5672295 5672331 -143844706 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 628 556 293 99 31 chr6 5672537 5672879 -143844158 - L1MB2 LINE L1 -3 6168 5802 2 628 405 0 0 0 chr6 5672879 5672924 -143844113 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 628 556 301 164 1203 chr6 5672924 5673051 -143843986 - L1MB2 LINE L1 -370 5801 5644 2 628 865 301 83 64 chr6 5673760 5673900 -143843137 - MT2A LTR ERVL -8 525 380 2 628 2360 104 6 58 chr6 5673900 5674247 -143842790 - ORR1A4 LTR MaLR 0 329 1 2 628 865 301 83 64 chr6 5674247 5674621 -143842416 - MT2A LTR ERVL -154 379 1 2 628 270 0 0 0 chr6 5675183 5675213 -143841824 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 628 417 242 6 69 chr6 5675223 5675341 -143841696 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 2 628 432 0 0 0 chr6 5675341 5675389 -143841648 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2 628 417 242 6 69 chr6 5675389 5675443 -143841594 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 2 628 203 189 0 0 chr6 5676730 5676767 -143840270 + A-rich Low_complexity Low_complexity 1 37 0 2 628 21 0 0 0 chr6 5678275 5678296 -143838741 + AT_rich Low_complexity Low_complexity 1 21 0 2 628 306 148 0 0 chr6 5678503 5678557 -143838480 + (TTG)n Simple_repeat Simple_repeat 3 56 0 2 628 206 338 24 61 chr6 5678626 5678708 -143838329 - MIR SINE MIR -178 84 6 2 628 303 28 0 0 chr6 5679619 5679655 -143837382 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2 628 473 312 47 36 chr6 5680087 5680280 -143836757 - MIRb SINE MIR -73 195 1 2 628 1685 32 5 0 chr6 5680978 5681163 -143835874 - B2_Mm1t SINE B2 -6 187 2 2 628 743 114 9 9 chr6 5681178 5681293 -143835744 - B1_Mur3 SINE Alu -1 148 34 2 628 854 302 63 24 chr6 5681420 5681674 -143835363 + B4A SINE B4 8 271 -21 2 628 363 211 0 34 chr6 5681957 5682075 -143834962 + CT-rich Low_complexity Low_complexity 2 115 0 2 628 360 339 51 11 chr6 5682088 5682264 -143834773 - Charlie2b DNA MER1_type -2561 221 39 2 628 1040 276 19 11 chr6 5683573 5683840 -143833197 - B4A SINE B4 0 292 24 2 628 294 362 64 23 chr6 5686829 5687017 -143830020 + MIRc SINE MIR 9 197 -65 2 628 648 183 267 17 chr6 5687170 5687342 -143829695 - ID_B1 SINE B4 -7 217 3 2 628 277 346 84 0 chr6 5688121 5688228 -143828809 - PB1D10 SINE Alu -1 116 1 2 628 265 200 22 0 chr6 5688829 5688874 -143828163 + B1F SINE Alu 6 51 -98 2 628 913 253 22 17 chr6 5688904 5689085 -143827952 + B3A SINE B2 1 182 -16 2 628 779 173 64 14 chr6 5689132 5689273 -143827764 + B1_Mus1 SINE Alu 1 148 0 2 628 188 135 0 26 chr6 5690314 5690352 -143826685 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 628 214 179 0 0 chr6 5693987 5694026 -143823011 + T-rich Low_complexity Low_complexity 2 40 0 2 628 394 291 115 0 chr6 5694807 5694955 -143822082 - RSINE1 SINE B4 0 165 1 2 628 273 281 85 91 chr6 5694988 5695164 -143821873 + MER34 LTR ERV1 366 540 -2 2 628 636 310 210 40 chr6 5695641 5696088 -143820949 - LTR55 LTR ERV -17 531 9 2 628 312 131 98 0 chr6 5697496 5697557 -143819480 - ID4 SINE ID -15 68 2 2 628 796 313 82 45 chr6 5697979 5698404 -143818633 + Charlie1a DNA MER1_type 70 510 -945 2 628 1457 267 125 56 chr6 5698708 5699498 -143817539 + Charlie1a DNA MER1_type 569 1413 -42 2 628 998 262 36 91 chr6 5699643 5699950 -143817087 + B4 SINE B4 2 291 -1 2 628 225 296 54 0 chr6 5699968 5700039 -143816998 + ID4_ SINE ID 5 78 -5 2 628 2175 144 124 13 chr6 5701281 5701660 -143815377 - MTC LTR MaLR 0 421 1 2 628 195 265 0 0 chr6 5701705 5701754 -143815283 - MIRb SINE MIR -21 247 199 2 628 207 194 0 0 chr6 5701862 5701898 -143815139 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 2 628 265 0 75 0 chr6 5702588 5702628 -143814409 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 628 434 335 73 50 chr6 5703198 5703556 -143813481 + Lx8 LINE L1 7090 7455 -18 3 628 8476 45 2 2 chr6 5703949 5704972 -143812065 - L1Md_A LINE L1 0 6582 5587 3 628 1006 239 19 10 chr6 5706378 5706585 -143810452 + B3 SINE B2 1 209 -7 3 628 217 185 36 18 chr6 5707445 5707500 -143809537 + GA-rich Low_complexity Low_complexity 2 57 0 3 628 180 0 0 0 chr6 5708999 5709019 -143808018 + (T)n Simple_repeat Simple_repeat 1 20 0 3 628 255 31 0 0 chr6 5709069 5709101 -143807936 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 3 628 284 192 0 37 chr6 5709561 5709615 -143807422 - RSINE1 SINE B4 -69 96 45 3 628 934 233 145 27 chr6 5709604 5709900 -143807137 - ORR1D2 LTR MaLR -37 333 3 3 628 347 206 55 0 chr6 5710177 5710250 -143806787 - MTEb LTR MaLR -16 363 287 3 628 3394 150 61 16 chr6 5710250 5710811 -143806226 + Lx2 LINE L1 6411 6996 -1 3 628 324 255 52 0 chr6 5710924 5711013 -143806024 - MTEb LTR MaLR -284 95 1 3 628 499 276 85 57 chr6 5711182 5711359 -143805678 - B3A SINE B2 -15 183 2 3 628 321 297 0 26 chr6 5713428 5713504 -143803533 + RSINE1 SINE B4 81 154 -11 3 628 450 0 0 0 chr6 5713511 5713561 -143803476 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 628 397 17 32 32 chr6 5713562 5713624 -143803413 + (CAGAGA)n Simple_repeat Simple_repeat 2 63 0 3 628 775 247 0 0 chr6 5713665 5713819 -143803218 + RSINE1 SINE B4 3 156 -9 3 628 189 350 73 24 chr6 5714375 5714498 -143802539 - L2b LINE L2 0 3375 3247 3 628 21 0 0 0 chr6 5715374 5715395 -143801642 + AT_rich Low_complexity Low_complexity 1 21 0 3 628 805 310 54 30 chr6 5715425 5715758 -143801279 - Lx8 LINE L1 -182 7291 6951 3 628 1156 277 31 17 chr6 5715769 5716310 -143800727 + Lx7 LINE L1 5553 6112 -1584 3 628 180 125 0 0 chr6 5716546 5716578 -143800459 + (T)n Simple_repeat Simple_repeat 1 32 0 3 628 226 352 88 0 chr6 5716705 5716796 -143800241 - RSINE1 SINE B4 -63 102 4 3 628 189 0 0 0 chr6 5718880 5718901 -143798136 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 628 377 206 15 0 chr6 5720931 5720999 -143796038 + PB1D10 SINE Alu 10 78 -39 3 628 372 43 0 0 chr6 5721000 5721046 -143795991 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 628 270 0 0 0 chr6 5721905 5721935 -143795102 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 628 26 30 0 0 chr6 5722468 5722501 -143794536 + AT_rich Low_complexity Low_complexity 1 33 0 3 628 336 202 71 12 chr6 5723458 5723543 -143793494 - L3 LINE CR1 -870 3619 3530 3 628 405 0 0 0 chr6 5723731 5723776 -143793261 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 628 213 132 0 0 chr6 5724051 5724089 -143792948 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 3 628 222 128 0 0 chr6 5724197 5724236 -143792801 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 628 868 275 20 68 chr6 5724273 5724569 -143792468 - B4A SINE B4 -6 286 5 3 628 482 325 0 0 chr6 5725295 5725412 -143791625 + B3A SINE B2 52 168 -30 3 628 390 74 0 0 chr6 5725416 5725470 -143791567 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 628 180 163 0 0 chr6 5726571 5726614 -143790423 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 628 300 20 0 58 chr6 5727571 5727623 -143789414 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 628 361 182 0 33 chr6 5729443 5729534 -143787503 + GA-rich Low_complexity Low_complexity 2 89 0 3 628 1145 110 0 6 chr6 5730099 5730264 -143786773 - B2_Mm2 SINE B2 -31 164 1 3 628 192 269 39 0 chr6 5730572 5730624 -143786413 + L2c LINE L2 3334 3387 0 3 628 700 298 6 11 chr6 5731490 5731654 -143785383 + B3A SINE B2 1 164 -34 3 628 406 70 0 27 chr6 5731654 5731727 -143785310 + (CTCA)n Simple_repeat Simple_repeat 4 74 0 3 628 700 298 6 11 chr6 5731727 5731745 -143785292 + B3A SINE B2 165 181 -17 3 628 288 363 17 26 chr6 5732196 5732312 -143784725 - MER5B DNA MER1_type 0 178 64 3 628 236 333 54 54 chr6 5732397 5732565 -143784472 + MER5A DNA MER1_type 1 168 -21 3 628 189 262 0 0 chr6 5733554 5733596 -143783441 - MIR SINE MIR -149 113 72 3 628 228 163 0 0 chr6 5734167 5734210 -143782827 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 3 628 23 33 0 0 chr6 5735706 5735736 -143781301 + AT_rich Low_complexity Low_complexity 1 30 0 3 628 456 67 0 0 chr6 5736031 5736091 -143780946 + (TAG)n Simple_repeat Simple_repeat 2 61 0 3 628 231 234 0 0 chr6 5736091 5736138 -143780899 + L1MD2 LINE L1 432 478 -6069 3 628 235 225 0 14 chr6 5736669 5736741 -143780296 - L1MEc LINE L1 -3011 3308 3238 3 628 276 291 94 98 chr6 5736746 5736990 -143780047 - L1MEc LINE L1 -4362 2038 1796 3 628 1195 84 11 0 chr6 5736992 5737170 -143779867 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 628 1138 339 57 41 chr6 5737195 5737909 -143779128 - L1M3de LINE L1 -4737 1916 1191 3 628 288 323 70 46 chr6 5738519 5738749 -143778288 - L1M3de LINE L1 -5726 927 477 3 628 688 263 128 0 chr6 5739154 5739333 -143777704 + B3 SINE B2 2 203 -13 3 628 234 0 0 0 chr6 5739515 5739541 -143777496 + (T)n Simple_repeat Simple_repeat 1 26 0 3 628 333 352 68 17 chr6 5740047 5740342 -143776695 - L1MEc LINE L1 -6054 346 37 3 628 402 21 0 0 chr6 5740457 5740504 -143776533 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 628 223 235 0 11 chr6 5741151 5741215 -143775822 - BC1_Mm scRNA scRNA -20 63 2 3 628 1793 180 79 30 chr6 5741294 5741661 -143775376 - ORR1B1 LTR MaLR -9 385 1 3 628 236 268 73 0 chr6 5742868 5742950 -143774087 - RMER1C Other Other -5 1337 1250 3 628 324 208 179 24 chr6 5742887 5743010 -143774027 - Lx8 LINE L1 -8 7465 7324 3 628 324 40 20 0 chr6 5744105 5744155 -143772882 + L1Md_F2 LINE L1 6529 6579 -3 3 628 189 0 0 0 chr6 5745104 5745125 -143771912 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 628 240 59 0 0 chr6 5745125 5745159 -143771878 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 628 639 81 0 0 chr6 5745159 5745257 -143771780 + (GA)n Simple_repeat Simple_repeat 2 100 0 3 628 1820 261 31 22 chr6 5745257 5745747 -143771290 - Lx9 LINE L1 -237 7407 6914 3 628 239 301 72 0 chr6 5745744 5745897 -143771140 + L1M4 LINE L1 5703 5866 -312 3 628 21 57 0 0 chr6 5746906 5746941 -143770096 + AT_rich Low_complexity Low_complexity 1 35 0 3 628 198 103 0 0 chr6 5748651 5748680 -143768357 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 628 315 0 0 0 chr6 5749491 5749526 -143767511 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 628 24 32 0 0 chr6 5751192 5751223 -143765814 + AT_rich Low_complexity Low_complexity 1 31 0 3 628 414 310 63 26 chr6 5751243 5751432 -143765605 + MER58A DNA MER1_type 29 224 0 3 628 693 282 95 68 chr6 5751584 5751953 -143765084 + MTEa LTR MaLR 1 379 0 3 628 300 325 12 0 chr6 5752016 5752096 -143764941 + ID4_ SINE ID 2 82 -1 3 628 494 70 14 0 chr6 5754072 5754143 -143762894 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 628 402 229 46 51 chr6 5755386 5755561 -143761476 - MER33 DNA MER1_type -95 229 56 3 628 666 0 0 0 chr6 5755568 5755642 -143761395 + (TTC)n Simple_repeat Simple_repeat 3 76 0 3 628 223 93 23 23 chr6 5755642 5755686 -143761351 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 628 295 286 57 0 chr6 5755696 5755801 -143761236 - Charlie5 DNA MER1_type -276 2348 2238 3 628 355 286 130 87 chr6 5757662 5757892 -143759145 + MLT1A LTR MaLR 1 240 -134 3 628 228 250 13 53 chr6 5758335 5758411 -143758626 - LTR81A LTR ERV1? -9 1341 1269 3 628 1011 177 120 10 chr6 5758894 5759094 -143757943 - URR1A DNA MER1_type -3 223 2 3 628 294 95 0 0 chr6 5759338 5759380 -143757657 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 628 766 353 100 54 chr6 5759536 5760274 -143756763 + L1M4b LINE L1 103 852 -6482 3 628 814 150 27 54 chr6 5760274 5760422 -143756615 + B1_Mur2 SINE Alu 5 148 -1 3 628 766 353 100 54 chr6 5760422 5760620 -143756417 + L1M4b LINE L1 853 1082 -6252 3 628 477 0 0 0 chr6 5760910 5760963 -143756074 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 628 510 254 56 0 chr6 5761157 5761283 -143755754 + B4 SINE B4 69 201 -91 3 628 217 296 14 14 chr6 5761287 5761359 -143755678 + GA-rich Low_complexity Low_complexity 3 74 0 3 628 253 288 45 0 chr6 5761360 5761426 -143755611 + B4 SINE B4 224 292 0 3 628 1348 262 156 27 chr6 5762063 5762684 -143754353 + L1M4b LINE L1 2562 3262 -4072 3 628 2017 165 84 14 chr6 5763187 5763555 -143753482 + ORR1B1 LTR MaLR 1 394 0 3 628 260 271 17 0 chr6 5763851 5763910 -143753127 + RSINE1 SINE B4 3 62 -103 3 628 360 0 0 0 chr6 5763962 5764002 -143753035 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 629 730 260 110 82 chr6 5768073 5768354 -143748683 - B4A SINE B4 -3 289 1 3 629 719 268 35 123 chr6 5768495 5768805 -143748232 - ORR1E LTR MaLR -73 286 4 3 629 463 211 26 0 chr6 5769125 5769225 -143747812 + PB1D10 SINE Alu 5 116 -33 3 629 351 0 0 0 chr6 5769230 5769269 -143747768 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 629 183 42 0 0 chr6 5770179 5770203 -143746834 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3 629 261 274 0 0 chr6 5770447 5770509 -143746528 + Lx6 LINE L1 7210 7271 -189 3 629 1160 77 14 0 chr6 5770522 5770665 -143746372 - B1_Mus2 SINE Alu -2 145 1 3 629 212 167 0 0 chr6 5770665 5770707 -143746330 + T-rich Low_complexity Low_complexity 1 42 0 3 629 251 239 0 43 chr6 5770707 5770777 -143746260 + Lx6 LINE L1 7251 7317 -143 3 629 684 0 0 0 chr6 5770777 5770853 -143746184 + (TTCTC)n Simple_repeat Simple_repeat 5 80 0 3 629 236 111 22 0 chr6 5770853 5770898 -143746139 + (TCCC)n Simple_repeat Simple_repeat 2 47 0 3 629 373 159 110 18 chr6 5770902 5771011 -143746026 + Lx6 LINE L1 7316 7434 -26 3 629 360 301 121 25 chr6 5771176 5771333 -143745704 - MER5B DNA MER1_type -1 177 6 3 629 1300 41 0 0 chr6 5771900 5772047 -143744990 + B1_Mus2 SINE Alu 1 147 0 4 629 763 105 16 0 chr6 5772047 5772171 -143744866 + (GAAAA)n Simple_repeat Simple_repeat 4 129 0 4 629 333 0 0 0 chr6 5772327 5772364 -143744673 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 629 434 247 61 42 chr6 5773334 5773501 -143743536 + MLT1B LTR MaLR 13 187 -280 4 629 734 282 148 8 chr6 5773501 5773686 -143743351 + B4A SINE B4 4 214 -78 4 629 540 0 0 0 chr6 5773686 5773746 -143743291 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 629 734 282 148 8 chr6 5773746 5773803 -143743234 + B4A SINE B4 215 279 -13 4 629 320 267 87 48 chr6 5773803 5773847 -143743190 + MLT1B LTR MaLR 188 232 -235 4 629 500 342 19 12 chr6 5775073 5775233 -143741804 + RSINE1 SINE B4 5 165 0 4 629 212 273 11 0 chr6 5775235 5775323 -143741714 + (TA)n Simple_repeat Simple_repeat 2 90 0 4 629 1212 221 241 87 chr6 5776092 5776483 -143740554 + MT2A LTR ERVL 1 464 -69 4 629 213 39 0 0 chr6 5776483 5776509 -143740528 + (CATA)n Simple_repeat Simple_repeat 2 27 0 4 629 1212 221 241 87 chr6 5776509 5776577 -143740460 + MT2A LTR ERVL 465 531 -2 4 629 387 303 55 33 chr6 5776844 5777025 -143740012 - MLT1A0 LTR MaLR -174 191 7 4 629 218 372 48 48 chr6 5777656 5777862 -143739175 - MIRb SINE MIR -53 215 10 4 629 766 122 84 0 chr6 5777895 5778026 -143739011 + B1_Mus1 SINE Alu 6 147 -1 4 629 264 59 0 0 chr6 5779107 5779141 -143737896 + (T)n Simple_repeat Simple_repeat 1 34 0 4 629 1361 275 45 8 chr6 5780780 5781161 -143735876 - Lx5 LINE L1 0 7050 6656 4 629 366 205 0 0 chr6 5783328 5783406 -143733631 + T-rich Low_complexity Low_complexity 1 78 0 4 629 230 236 18 0 chr6 5783680 5783735 -143733302 + CT-rich Low_complexity Low_complexity 1 56 0 4 629 9818 126 9 3 chr6 5783821 5785296 -143731741 - L1_Mur2 LINE L1 -915 4962 3486 4 629 186 71 0 0 chr6 5785296 5785324 -143731713 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 4 629 9818 126 9 3 chr6 5785324 5785363 -143731674 - L1_Mur2 LINE L1 -2392 3485 3440 4 629 1257 74 53 0 chr6 5785364 5785553 -143731484 + L1_Mus4 LINE L1 6436 6634 -2 4 629 248 278 43 77 chr6 5785616 5785733 -143731304 - B1F SINE Alu -2 147 35 4 629 339 305 202 11 chr6 5786712 5786905 -143730132 + B4 SINE B4 59 289 -3 4 629 328 147 27 0 chr6 5786910 5786985 -143730052 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 629 546 16 0 0 chr6 5787225 5787288 -143729749 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 629 340 319 16 25 chr6 5787299 5787421 -143729616 + ID_B1 SINE B4 84 204 -20 4 629 248 136 0 33 chr6 5787429 5787490 -143729547 + (CAGAGA)n Simple_repeat Simple_repeat 4 62 0 4 629 360 330 59 8 chr6 5787789 5787908 -143729129 + ID_B1 SINE B4 81 205 -19 4 629 698 209 15 0 chr6 5788822 5788956 -143728081 + B1_Mur3 SINE Alu 1 136 -13 4 629 189 0 0 0 chr6 5789261 5789282 -143727755 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 629 690 204 180 11 chr6 5789750 5789928 -143727109 + B3 SINE B2 4 211 -5 4 629 271 65 43 0 chr6 5790727 5790773 -143726264 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 4 629 1156 68 0 0 chr6 5790775 5790921 -143726116 - B1_Mus2 SINE Alu 0 147 2 4 629 279 258 0 0 chr6 5790932 5790994 -143726043 - PB1D10 SINE Alu -8 109 48 4 629 1558 63 0 0 chr6 5791130 5791321 -143725716 + B2_Mm1t SINE B2 1 191 -2 4 629 199 323 21 21 chr6 5791542 5791637 -143725400 + MIRb SINE MIR 94 188 -80 4 629 915 267 28 18 chr6 5792054 5792075 -143724962 + B4A SINE B4 4 27 -265 4 629 207 0 0 0 chr6 5792075 5792098 -143724939 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 629 915 267 28 18 chr6 5792098 5792358 -143724679 + B4A SINE B4 28 288 -4 4 629 261 0 0 0 chr6 5792392 5792421 -143724616 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 629 696 24 0 0 chr6 5793264 5793346 -143723691 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 4 629 461 307 13 7 chr6 5793446 5793597 -143723440 - B4A SINE B4 -6 286 135 4 629 1442 207 41 29 chr6 5795561 5795905 -143721132 - MTD LTR MaLR -51 368 21 4 629 297 309 64 16 chr6 5795913 5796038 -143720999 + B1_Mus1 SINE Alu 15 145 -3 4 629 186 310 125 11 chr6 5796462 5796550 -143720487 + L2b LINE L2 3276 3373 -2 4 629 3021 15 3 0 chr6 5796636 5796972 -143720065 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 629 21614 11 2 0 chr6 5796972 5799325 -143717712 - IAPEz-int LTR ERVK 0 6481 4123 4 629 953 80 24 0 chr6 5799327 5799452 -143717585 - IAPEz-int LTR ERVK -2770 4910 4783 4 629 1863 115 4 4 chr6 5799447 5799709 -143717328 - IAPEz-int LTR ERVK -5183 2497 2236 4 629 444 82 0 32 chr6 5799698 5799761 -143717276 - IAPEz-int LTR ERVK -5062 1419 1359 4 629 5258 55 6 14 chr6 5799761 5800421 -143716616 - IAPEz-int LTR ERVK -5819 662 8 4 629 3036 21 0 0 chr6 5800421 5800758 -143716279 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 629 474 157 0 0 chr6 5800793 5800876 -143716161 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 629 338 368 76 60 chr6 5801537 5801956 -143715081 - MLT1D LTR MaLR -10 495 70 4 629 254 352 126 21 chr6 5802961 5803199 -143713838 + MIRb SINE MIR 5 267 -1 4 629 218 270 16 0 chr6 5804270 5804333 -143712704 - MER5A DNA MER1_type -12 177 114 4 629 479 315 43 64 chr6 5804538 5804864 -143712173 + ORR1E LTR MaLR 1 319 -40 4 629 1325 101 21 0 chr6 5804979 5805168 -143711869 + B2_Mm2 SINE B2 2 194 -1 4 629 880 167 0 22 chr6 5807743 5807927 -143709110 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 629 400 214 90 15 chr6 5808377 5808510 -143708527 + MIRb SINE MIR 111 253 -15 4 629 270 351 0 86 chr6 5809184 5809346 -143707691 + MamRep488 DNA hAT 68 215 -4 4 629 287 80 40 0 chr6 5810389 5810439 -143706598 + (CGTG)n Simple_repeat Simple_repeat 4 55 0 4 629 1996 164 21 34 chr6 5811892 5812278 -143704759 - RLTR14 LTR ERV1 -1 381 1 4 629 458 297 119 21 chr6 5812321 5812682 -143704355 + L1MC3 LINE L1 7496 7829 -166 4 629 231 318 0 12 chr6 5814622 5814708 -143702329 - B4A SINE B4 -6 286 202 4 629 1630 131 94 7 chr6 5814956 5815142 -143701895 + Lx4A LINE L1 6731 6931 -127 4 629 369 0 0 0 chr6 5815142 5815183 -143701854 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 629 1630 131 94 7 chr6 5815183 5815295 -143701742 + Lx4A LINE L1 6932 7054 -4 4 629 977 83 37 8 chr6 5816635 5817155 -143699882 + (TG)n Simple_repeat Simple_repeat 1 535 0 4 629 458 208 187 101 chr6 5817155 5817423 -143699614 - B4A SINE B4 -1 291 1 4 629 312 288 89 32 chr6 5817455 5817613 -143699424 + MER33 DNA MER1_type 14 180 -144 4 629 818 216 113 0 chr6 5819600 5819794 -143697243 + B3 SINE B2 1 216 0 4 629 615 152 128 0 chr6 5820445 5820570 -143696467 - B1_Mur4 SINE Alu -1 149 9 4 629 183 114 0 0 chr6 5821058 5821093 -143695944 + (T)n Simple_repeat Simple_repeat 1 35 0 4 629 1068 52 0 0 chr6 5822681 5822816 -143694221 + (CTG)n Simple_repeat Simple_repeat 2 136 0 4 629 433 287 82 70 chr6 5822817 5823147 -143693890 - L1ME3A LINE L1 -96 6077 5744 4 629 2078 244 47 33 chr6 5823211 5823702 -143693335 + Lx6 LINE L1 6903 7400 -60 4 629 564 116 0 0 chr6 5824470 5824556 -143692481 + (TA)n Simple_repeat Simple_repeat 2 87 0 4 629 612 252 57 19 chr6 5824556 5824714 -143692323 - B3 SINE B2 -49 167 4 4 629 243 0 0 0 chr6 5825144 5825171 -143691866 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 629 993 17 0 0 chr6 5825408 5825523 -143691514 + (CTTTG)n Simple_repeat Simple_repeat 2 116 0 4 629 504 0 0 0 chr6 5826450 5826506 -143690531 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 629 435 358 15 0 chr6 5828036 5828170 -143688867 + RSINE1 SINE B4 16 151 -14 4 629 992 80 227 0 chr6 5828255 5828405 -143688632 + B2_Mm2 SINE B2 2 185 -10 4 629 477 329 96 33 chr6 5828923 5829288 -143687749 - L1MB1 LINE L1 -167 6001 5614 4 629 579 74 0 0 chr6 5829292 5829373 -143687664 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 4 629 444 264 201 7 chr6 5829504 5829653 -143687384 + B3A SINE B2 6 183 -15 4 629 271 262 12 12 chr6 5829864 5829949 -143687088 + MTEb LTR MaLR 295 379 0 4 629 318 50 0 0 chr6 5830396 5830436 -143686601 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 629 491 82 0 14 chr6 5830453 5830527 -143686510 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 629 269 324 9 44 chr6 5832067 5832087 -143684950 + ID_B1 SINE B4 76 149 -75 4 629 375 244 12 0 chr6 5832087 5832173 -143684864 + PB1D10 SINE Alu 10 96 -21 4 629 238 288 27 0 chr6 5832328 5832401 -143684636 - PB1D10 SINE Alu -12 105 31 4 629 1125 74 172 0 chr6 5833990 5834153 -143682884 + B2_Mm1t SINE B2 2 192 -1 4 629 486 309 29 68 chr6 5834766 5834971 -143682066 - B3A SINE B2 0 198 2 4 629 594 239 9 0 chr6 5834995 5835108 -143681929 + RMER15 LTR ERVL 462 575 0 4 629 231 224 20 0 chr6 5836536 5836585 -143680452 + CT-rich Low_complexity Low_complexity 5 54 0 4 629 415 246 172 12 chr6 5838669 5838838 -143678199 - B3A SINE B2 -1 197 2 4 629 307 246 0 0 chr6 5839149 5839210 -143677827 + RSINE1 SINE B4 2 62 -103 4 629 225 119 0 0 chr6 5841312 5841354 -143675683 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 629 235 367 66 17 chr6 5842090 5842271 -143674766 + MIR SINE MIR 42 229 -39 4 629 250 364 55 79 chr6 5843906 5844070 -143672967 - L2b LINE L2 -7 3368 3209 4 629 363 277 84 35 chr6 5844153 5844295 -143672742 + RSINE1 SINE B4 3 151 -14 4 629 1179 296 54 30 chr6 5844448 5844817 -143672220 - MTEa LTR MaLR 0 379 2 4 629 274 264 61 35 chr6 5845315 5845429 -143671608 - MLT1K LTR MaLR -478 117 1 4 629 493 339 26 26 chr6 5845487 5845681 -143671356 + MIRb SINE MIR 41 234 -34 4 629 449 292 138 31 chr6 5846194 5846512 -143670525 + L2a LINE L2 3044 3395 -31 4 629 297 0 0 0 chr6 5847473 5847506 -143669531 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 629 366 61 0 0 chr6 5847664 5847713 -143669324 + (GGGGA)n Simple_repeat Simple_repeat 4 52 0 5 629 260 210 0 0 chr6 5847717 5847779 -143669258 + (ATAGG)n Simple_repeat Simple_repeat 5 66 0 5 629 630 204 53 0 chr6 5848011 5848143 -143668894 + B1_Mur2 SINE Alu 5 143 -6 5 629 450 0 0 0 chr6 5848147 5848197 -143668840 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 5 629 578 252 65 34 chr6 5850231 5850461 -143666576 + Lx8 LINE L1 6966 7186 -458 5 629 1893 309 98 29 chr6 5850595 5851431 -143665606 + Lx8 LINE L1 6519 7412 -61 5 629 336 102 0 0 chr6 5851466 5851515 -143665522 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 629 23 0 0 0 chr6 5852998 5853021 -143664016 + AT_rich Low_complexity Low_complexity 1 23 0 5 629 975 65 0 28 chr6 5855584 5855726 -143661311 - L1Md_F2 LINE L1 0 6582 6445 5 629 338 217 29 98 chr6 5855903 5856005 -143661032 + BC1_Mm scRNA scRNA 6 100 -52 5 629 247 329 71 18 chr6 5856008 5856178 -143660859 - MIR SINE MIR -12 250 72 5 629 1176 220 5 0 chr6 5856669 5856883 -143660154 + B3 SINE B2 1 215 -1 5 629 514 305 84 84 chr6 5857013 5857274 -143659763 + MIR SINE MIR 2 262 0 5 629 642 104 0 0 chr6 5858314 5858410 -143658627 + (TCCC)n Simple_repeat Simple_repeat 1 96 0 5 629 241 155 17 17 chr6 5858411 5858470 -143658567 + CT-rich Low_complexity Low_complexity 1 59 0 5 629 874 282 98 4 chr6 5859056 5859302 -143657735 + B4A SINE B4 1 269 -23 5 629 315 0 0 0 chr6 5859303 5859338 -143657699 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 629 22 0 0 0 chr6 5859893 5859915 -143657122 + AT_rich Low_complexity Low_complexity 1 22 0 5 629 225 196 0 0 chr6 5859996 5860042 -143656995 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 5 629 184 30 29 29 chr6 5862163 5862197 -143654840 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 629 1017 37 29 0 chr6 5862197 5862333 -143654704 - B1_Mus1 SINE Alu 0 148 9 5 629 2843 66 11 0 chr6 5862738 5863085 -143653952 + L1_Mus1 LINE L1 6215 6565 -2 5 629 222 380 29 9 chr6 5866244 5866351 -143650686 - MIR SINE MIR -149 119 17 5 629 307 353 22 7 chr6 5866353 5866490 -143650547 - MIR SINE MIR -24 238 100 5 629 196 53 53 0 chr6 5866577 5866615 -143650422 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 629 453 165 25 0 chr6 5867249 5867370 -143649667 + CT-rich Low_complexity Low_complexity 1 124 0 5 629 1074 192 39 0 chr6 5867785 5867993 -143649044 + RMER13B LTR ERVK 1 216 -692 5 629 1842 206 44 22 chr6 5867991 5868398 -143648639 + RMER13B LTR ERVK 466 881 -27 5 629 344 293 24 43 chr6 5868827 5868991 -143648046 - Lx9 LINE L1 -27 7617 7457 5 629 250 245 0 0 chr6 5868991 5869044 -143647993 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 5 629 491 264 6 0 chr6 5869045 5869223 -143647814 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 629 348 283 94 0 chr6 5869232 5869391 -143647646 - Lx9 LINE L1 -128 7516 7343 5 629 1384 274 22 16 chr6 5869401 5869817 -143647220 - Lx9 LINE L1 -1668 5976 5554 5 629 279 173 0 0 chr6 5874394 5874446 -143642591 + T-rich Low_complexity Low_complexity 1 52 0 5 629 180 0 0 0 chr6 5875037 5875057 -143641980 + (ATTTG)n Simple_repeat Simple_repeat 3 22 0 5 629 520 231 275 12 chr6 5875138 5875309 -143641728 + B3 SINE B2 1 216 0 5 629 193 0 94 0 chr6 5875315 5875347 -143641690 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5 629 7245 107 24 0 chr6 5875594 5876810 -143640227 - L1_Mus4 LINE L1 -8 6628 5389 5 629 5938 103 39 9 chr6 5876812 5878445 -143638592 - L1VL4 LINE L1 -1874 1685 1 5 629 404 297 94 25 chr6 5878765 5878974 -143638063 + MER2 DNA MER2_type 1 230 -115 5 629 426 39 0 0 chr6 5878978 5879030 -143638007 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 629 242 259 17 0 chr6 5879312 5879370 -143637667 - MER5B DNA MER1_type -26 152 94 5 629 522 0 0 0 chr6 5879814 5879872 -143637165 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 629 588 81 0 0 chr6 5880547 5880634 -143636403 + (TC)n Simple_repeat Simple_repeat 2 88 0 5 629 614 226 48 0 chr6 5882020 5882144 -143634893 + B1_Mur1 SINE Alu 3 132 -17 5 629 562 267 0 106 chr6 5882834 5883014 -143634023 + RSINE1 SINE B4 5 165 0 5 629 255 319 103 28 chr6 5883410 5883555 -143633482 + MER102a DNA MER1_type 175 330 0 5 629 187 344 62 41 chr6 5883796 5883893 -143633144 + MIR SINE MIR 164 262 0 5 629 414 0 0 0 chr6 5884493 5884539 -143632498 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 629 738 73 0 0 chr6 5884539 5884648 -143632389 + (TG)n Simple_repeat Simple_repeat 1 110 0 5 629 1566 49 0 0 chr6 5886490 5886673 -143630364 + L1_Mus1 LINE L1 6385 6567 0 5 629 438 69 0 0 chr6 5886688 5886746 -143630291 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 5 629 556 308 54 4 chr6 5887002 5887282 -143629755 - L1MA6 LINE L1 0 6300 6007 5 629 290 145 32 0 chr6 5888451 5888513 -143628524 + GA-rich Low_complexity Low_complexity 1 64 0 5 629 700 253 10 82 chr6 5888983 5889177 -143627860 + B3A SINE B2 2 181 -17 5 629 206 286 12 23 chr6 5889760 5889846 -143627191 + GA-rich Low_complexity Low_complexity 4 88 0 5 629 605 271 44 1 chr6 5890675 5890817 -143626220 + B3A SINE B2 2 150 -43 5 629 258 32 0 0 chr6 5890817 5890848 -143626189 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 629 273 280 99 58 chr6 5890848 5890876 -143626161 + B2_Mm1t SINE B2 151 179 -14 5 629 236 240 0 20 chr6 5891727 5891778 -143625259 + B3A SINE B2 5 54 -144 5 629 608 269 232 67 chr6 5894127 5894558 -143622479 + MLT1D LTR MaLR 3 504 -1 5 629 240 306 0 0 chr6 5897158 5897220 -143619817 + GA-rich Low_complexity Low_complexity 1 62 0 5 629 189 107 0 0 chr6 5897252 5897280 -143619757 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 5 629 28 0 0 0 chr6 5897806 5897834 -143619203 + AT_rich Low_complexity Low_complexity 1 28 0 5 78 648 22 33 0 chr6 5898183 5898273 -143618764 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 5 630 436 307 70 51 chr6 5898474 5898790 -143618247 + L1MC3 LINE L1 7460 7781 -4 5 630 339 25 0 0 chr6 5899166 5899206 -143617831 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 630 572 190 6 22 chr6 5899231 5899407 -143617630 + (TG)n Simple_repeat Simple_repeat 2 174 0 5 630 324 0 0 0 chr6 5899407 5899443 -143617594 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 630 572 190 6 22 chr6 5899443 5899449 -143617588 + (TG)n Simple_repeat Simple_repeat 2 7 0 5 630 22 35 0 0 chr6 5899778 5899807 -143617230 + AT_rich Low_complexity Low_complexity 1 29 0 5 630 351 304 53 46 chr6 5900021 5900173 -143616864 + LFSINE_Vert SINE SINE 117 269 -190 5 630 326 231 112 67 chr6 5900401 5900544 -143616493 + MIRm SINE MIR 25 181 -95 5 630 1701 53 0 0 chr6 5901008 5901198 -143615839 + B2_Mm1t SINE B2 2 191 -2 5 630 568 233 34 36 chr6 5901389 5901562 -143615475 - L1MA8 LINE L1 -5 6184 6014 5 630 256 369 38 19 chr6 5902247 5902352 -143614685 + PB1D10 SINE Alu 1 107 -10 5 630 342 0 0 0 chr6 5902352 5902390 -143614647 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 630 226 264 111 0 chr6 5902495 5902567 -143614470 + L1MB3 LINE L1 5545 5624 -673 5 630 1198 98 0 34 chr6 5902607 5902762 -143614275 + B2_Mm2 SINE B2 4 158 -37 5 630 180 0 0 0 chr6 5902762 5902782 -143614255 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 630 1198 98 0 34 chr6 5902782 5902805 -143614232 + B2_Mm2 SINE B2 159 176 -19 5 630 528 233 108 36 chr6 5902805 5903056 -143613981 + L1MB3 LINE L1 5657 5927 -256 5 630 955 156 207 0 chr6 5903277 5903456 -143613581 - B3 SINE B2 0 216 1 5 630 443 333 55 14 chr6 5903514 5903660 -143613377 + B4A SINE B4 17 168 -124 5 630 348 127 0 0 chr6 5903662 5903717 -143613320 + (ATG)n Simple_repeat Simple_repeat 2 56 0 5 630 237 324 0 27 chr6 5903718 5903791 -143613246 + B4A SINE B4 221 291 -1 5 630 252 235 246 57 chr6 5904109 5904231 -143612806 + MTE2a LTR MaLR 2 146 -233 5 630 513 312 64 67 chr6 5904175 5904457 -143612580 + MT2A LTR ERVL 81 361 -172 5 630 771 236 115 21 chr6 5904614 5904848 -143612189 + RMER20B LTR ERVK 156 411 -216 5 630 521 256 94 36 chr6 5905029 5905315 -143611722 + MT2A LTR ERVL 227 533 0 5 630 483 320 71 29 chr6 5905398 5905769 -143611268 - L1MB5 LINE L1 -272 5892 5509 5 630 291 28 0 0 chr6 5907102 5907138 -143609899 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 630 267 31 0 0 chr6 5907998 5908030 -143609007 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 5 630 993 166 189 22 chr6 5908052 5908237 -143608800 - B3 SINE B2 0 216 1 5 630 422 109 0 95 chr6 5908414 5908681 -143608356 + (TAG)n Simple_repeat Simple_repeat 1 241 0 5 630 318 50 0 0 chr6 5909376 5909416 -143607621 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 5 630 24 0 0 0 chr6 5910058 5910082 -143606955 + AT_rich Low_complexity Low_complexity 1 24 0 5 630 820 194 7 0 chr6 5910116 5910255 -143606782 + B1_Mur2 SINE Alu 10 149 0 5 630 314 253 20 0 chr6 5910255 5910407 -143606630 + GA-rich Low_complexity Low_complexity 1 155 0 5 630 23 0 0 0 chr6 5911379 5911402 -143605635 + AT_rich Low_complexity Low_complexity 1 23 0 5 630 498 240 19 0 chr6 5912134 5912238 -143604799 + PB1D10 SINE Alu 7 112 -5 5 630 245 282 139 57 chr6 5912183 5912341 -143604696 + B4 SINE B4 36 206 -86 5 630 307 333 46 0 chr6 5912265 5912360 -143604677 + B1_Mur1 SINE Alu 36 135 -14 5 630 887 174 27 20 chr6 5912360 5912507 -143604530 + B1_Mur4 SINE Alu 2 149 -1 5 630 307 333 46 0 chr6 5912507 5912519 -143604518 + B1_Mur1 SINE Alu 136 147 -2 5 630 861 160 28 7 chr6 5915647 5915792 -143601245 + B1_Mur4 SINE Alu 1 148 -2 5 630 307 43 0 0 chr6 5915792 5915839 -143601198 + L1Md_T LINE L1 6536 6582 0 5 630 1281 61 0 0 chr6 5915860 5916008 -143601029 + B1_Mus1 SINE Alu 1 148 0 6 630 618 125 16 16 chr6 5916028 5916150 -143600887 + GA-rich Low_complexity Low_complexity 4 125 0 6 630 212 233 0 0 chr6 5918112 5918155 -143598882 + C-rich Low_complexity Low_complexity 4 46 0 6 630 678 254 22 34 chr6 5918565 5918744 -143598293 - B3A SINE B2 -16 182 6 6 630 236 304 85 25 chr6 5920888 5921006 -143596031 - L2b LINE L2 0 3375 3251 6 630 198 289 211 0 chr6 5921434 5921524 -143595513 - L2a LINE L2 -9 3417 3309 6 630 371 106 15 0 chr6 5922355 5922421 -143594616 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 630 205 260 0 0 chr6 5923008 5923058 -143593979 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 630 360 351 128 12 chr6 5923471 5923814 -143593223 + L1MC5 LINE L1 5381 5763 -2119 6 630 501 17 0 0 chr6 5924934 5924992 -143592045 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 630 416 294 125 60 chr6 5925019 5925370 -143591667 + L1MC5 LINE L1 7158 7531 -430 6 630 415 243 42 89 chr6 5925611 5925801 -143591236 + L1MC5 LINE L1 7675 7855 -106 6 630 366 331 20 7 chr6 5926076 5926222 -143590815 - ID_B1 SINE B4 -8 216 69 6 630 297 0 0 0 chr6 5927423 5927456 -143589581 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 6 630 180 0 0 0 chr6 5927576 5927596 -143589441 + (A)n Simple_repeat Simple_repeat 1 20 0 6 630 5594 67 66 8 chr6 5928089 5928827 -143588210 - L1_Mus2 LINE L1 -3 6563 5783 6 630 7959 70 1 2 chr6 5928827 5930477 -143586560 - L1Md_F2 LINE L1 -16 6566 4918 6 630 3230 91 2 2 chr6 5930477 5930920 -143586117 + L1Md_F2 LINE L1 4458 4900 -983 6 630 228 67 0 0 chr6 5931250 5931280 -143585757 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 6 630 1042 114 7 0 chr6 5933159 5933299 -143583738 + B1_Mus1 SINE Alu 1 141 -7 6 630 6629 52 13 5 chr6 5933379 5934168 -143582869 - L1Md_F2 LINE L1 -3 6579 5785 6 630 214 312 38 38 chr6 5934263 5934343 -143582694 + L2c LINE L2 3270 3349 -38 6 630 1732 227 158 8 chr6 5935965 5936485 -143580552 - Lx9 LINE L1 -43 7601 7004 6 630 180 0 0 0 chr6 5936721 5936741 -143580296 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 630 246 62 0 0 chr6 5936741 5936773 -143580264 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 630 518 153 26 74 chr6 5936935 5937125 -143579912 + RMER17C LTR ERVK 95 275 -135 6 630 21 36 0 0 chr6 5937269 5937297 -143579740 + AT_rich Low_complexity Low_complexity 1 28 0 6 630 7902 91 18 5 chr6 5937766 5939302 -143577735 - L1_Mus4 LINE L1 0 6636 4610 6 630 414 0 0 0 chr6 5939557 5939603 -143577434 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 630 253 274 26 40 chr6 5939875 5939951 -143577086 + L2c LINE L2 3269 3343 -44 6 630 543 267 43 29 chr6 5940778 5940917 -143576120 - B1_Mur1 SINE Alu -2 147 7 6 630 856 294 65 26 chr6 5941150 5941534 -143575503 + MER82 DNA MER2_type 4 402 -251 6 630 372 267 17 118 chr6 5941533 5941652 -143575385 + RSINE1 SINE B4 59 165 0 6 630 236 243 53 97 chr6 5941601 5941715 -143575322 - RMER12 LTR ERVK -466 856 748 6 630 285 51 0 0 chr6 5942406 5942445 -143574592 + (T)n Simple_repeat Simple_repeat 1 39 0 6 630 221 196 0 18 chr6 5942890 5942947 -143574090 + CT-rich Low_complexity Low_complexity 3 58 0 6 630 772 292 111 4 chr6 5943455 5943656 -143573381 + B4A SINE B4 2 220 -72 6 630 405 0 0 0 chr6 5943656 5943701 -143573336 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 6 630 772 292 111 4 chr6 5943701 5943760 -143573277 + B4A SINE B4 221 289 -3 6 630 844 289 103 31 chr6 5944319 5944669 -143572368 - MLT1B LTR MaLR -13 377 3 6 630 461 319 36 28 chr6 5945249 5945561 -143571476 - L1M1 LINE L1 -711 5589 5281 6 630 1206 211 24 4 chr6 5946190 5946442 -143570595 - Lx5 LINE L1 0 7050 6794 6 630 252 59 0 0 chr6 5948247 5948281 -143568756 + (CACCT)n Simple_repeat Simple_repeat 5 38 0 6 630 189 0 0 0 chr6 5948560 5948581 -143568456 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 630 485 333 94 53 chr6 5948780 5949141 -143567896 + Lx8 LINE L1 7080 7455 -18 6 630 227 224 0 20 chr6 5949141 5949191 -143567846 + (TATG)n Simple_repeat Simple_repeat 2 50 0 6 630 365 217 24 12 chr6 5949295 5949379 -143567658 + ID_B1 SINE B4 136 220 -4 6 630 555 159 0 0 chr6 5949556 5949688 -143567349 + T-rich Low_complexity Low_complexity 1 132 0 6 630 1153 57 56 14 chr6 5949688 5949830 -143567207 - B1_Mus1 SINE Alu 0 148 1 6 630 244 364 124 23 chr6 5952587 5952764 -143564273 + MIR SINE MIR 13 207 -55 6 630 291 113 0 0 chr6 5954721 5954774 -143562263 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 630 183 42 0 0 chr6 5957766 5957790 -143559247 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 6 630 21 0 0 0 chr6 5958932 5958953 -143558084 + AT_rich Low_complexity Low_complexity 1 21 0 6 630 258 136 0 0 chr6 5959463 5959507 -143557530 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 6 630 668 211 25 26 chr6 5959748 5959946 -143557091 - B3 SINE B2 0 195 1 6 630 405 0 0 0 chr6 5962031 5962076 -143554961 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 630 311 0 26 0 chr6 5962076 5962114 -143554923 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 630 636 14 0 0 chr6 5962157 5962230 -143554807 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 6 630 283 267 0 0 chr6 5964022 5964082 -143552955 + MER45R DNA Tip100 1522 1581 0 6 630 679 241 39 22 chr6 5965134 5965312 -143551725 + B3A SINE B2 2 182 -16 6 630 230 156 0 0 chr6 5965312 5965357 -143551680 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 630 27 49 0 0 chr6 5966413 5966454 -143550583 + AT_rich Low_complexity Low_complexity 1 41 0 6 630 201 39 0 0 chr6 5968234 5968260 -143548777 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 630 739 206 15 0 chr6 5968265 5968396 -143548641 - B1_Mur3 SINE Alu -8 141 9 6 630 397 256 55 79 chr6 5968301 5968428 -143548609 - MT2B LTR ERVL -344 257 134 6 630 322 76 37 37 chr6 5970681 5970763 -143546274 + (CAAAA)n Simple_repeat Simple_repeat 2 83 0 6 630 309 109 0 0 chr6 5971631 5971677 -143545360 + (A)n Simple_repeat Simple_repeat 1 46 0 6 630 204 258 16 0 chr6 5971729 5971791 -143545246 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 630 299 279 7 45 chr6 5971984 5972138 -143544899 + GA-rich Low_complexity Low_complexity 2 149 0 6 630 324 0 0 0 chr6 5972307 5972343 -143544694 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 630 816 163 14 7 chr6 5973658 5973800 -143543237 - B1_Mur2 SINE Alu -1 148 6 6 630 396 59 0 0 chr6 5976131 5976182 -143540855 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 630 292 260 40 171 chr6 5976671 5976847 -143540190 + MIR SINE MIR 72 224 -38 6 630 454 226 151 0 chr6 5979212 5979318 -143537719 + RSINE1 SINE B4 44 165 0 6 630 423 155 0 0 chr6 5979320 5979404 -143537633 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 630 797 190 28 14 chr6 5979783 5979927 -143537110 + B1_Mur2 SINE Alu 1 146 -3 6 630 266 86 41 41 chr6 5979929 5980002 -143537035 + (CAAA)n Simple_repeat Simple_repeat 1 73 0 6 630 293 355 86 17 chr6 5980052 5980227 -143536810 - MT2A LTR ERVL -114 419 233 6 630 453 333 12 9 chr6 5980229 5980393 -143536644 - MTEa LTR MaLR -189 190 25 6 630 894 253 102 15 chr6 5981512 5981840 -143535197 - ORR1E LTR MaLR -1 378 6 6 630 827 244 61 15 chr6 5982271 5982467 -143534570 - B3 SINE B2 -7 209 5 6 630 468 219 16 32 chr6 5983086 5983209 -143533828 - B1_Mur2 SINE Alu -4 145 25 6 630 1154 66 0 0 chr6 5983254 5983391 -143533646 - B1_Mus1 SINE Alu -10 138 2 6 630 497 293 50 89 chr6 5983805 5983985 -143533052 + B4A SINE B4 3 175 -117 6 630 22 0 0 0 chr6 5984213 5984235 -143532802 + AT_rich Low_complexity Low_complexity 1 22 0 6 630 273 297 71 39 chr6 5984621 5984775 -143532262 - L1MEc LINE L1 -6047 353 195 6 630 614 268 94 55 chr6 5985569 5985770 -143531267 + B3 SINE B2 3 211 -5 6 630 187 273 30 111 chr6 5987319 5987418 -143529619 - L4 LINE RTE -622 1407 1317 6 630 189 214 0 0 chr6 5989508 5989550 -143527487 + CT-rich Low_complexity Low_complexity 2 43 0 6 630 201 154 0 0 chr6 5989555 5989594 -143527443 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 6 630 680 301 63 56 chr6 5990299 5990584 -143526453 + B4A SINE B4 2 288 -4 6 630 944 80 0 8 chr6 5990686 5990812 -143526225 + B2_Mm2 SINE B2 2 126 -69 6 630 1245 86 109 0 chr6 5990812 5990986 -143526051 + B2_Mm2 SINE B2 3 195 0 6 630 195 69 0 0 chr6 5993197 5993226 -143523811 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 6 630 887 155 56 0 chr6 5995316 5995458 -143521579 + B1_Mur4 SINE Alu 1 150 0 6 630 252 86 0 0 chr6 5995460 5995495 -143521542 + (A)n Simple_repeat Simple_repeat 1 35 0 6 630 335 285 7 9 chr6 5996231 5996316 -143520721 - PB1D10 SINE Alu -66 84 1 6 630 298 250 132 29 chr6 5996558 5996694 -143520343 + L1MD2 LINE L1 6196 6345 -14 6 630 2162 162 47 13 chr6 5997718 5998100 -143518937 + MTC LTR MaLR 6 400 -21 6 630 671 146 0 0 chr6 5998395 5998498 -143518539 - L1_Rod LINE L1 -6341 831 729 6 630 753 237 128 59 chr6 5998535 5998931 -143518106 + MT2B LTR ERVL 1 546 -55 6 630 545 0 15 0 chr6 5998931 5998996 -143518041 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 6 630 753 214 100 67 chr6 5998996 5999045 -143517992 + MT2B LTR ERVL 547 600 -1 6 630 492 247 181 22 chr6 5999045 5999227 -143517810 + Lx9 LINE L1 5761 5971 -1673 6 630 2897 233 72 14 chr6 5999238 5999948 -143517089 + Lx9 LINE L1 6143 6893 -751 6 630 1263 198 197 9 chr6 6000000 6000569 -143516468 + Lx9 LINE L1 6969 7644 0 1 630 456 315 47 0 chr6 6000876 6001025 -143516012 + RSINE1 SINE B4 4 159 -6 2 630 27 0 0 0 chr6 6001042 6001069 -143515968 + AT_rich Low_complexity Low_complexity 1 27 0 3 630 244 192 26 84 chr6 6003377 6003471 -143513566 - Charlie24 DNA MER1_type -35 2415 2355 4 630 223 335 68 76 chr6 6003946 6004182 -143512855 - L3 LINE CR1 -606 3883 3650 5 630 243 0 0 0 chr6 6005220 6005247 -143511790 + (CAGCC)n Simple_repeat Simple_repeat 4 30 0 6 630 180 0 0 0 chr6 6006250 6006270 -143510767 + (A)n Simple_repeat Simple_repeat 1 20 0 7 630 249 33 0 0 chr6 6007849 6007879 -143509158 + (TAA)n Simple_repeat Simple_repeat 2 31 0 8 630 21 0 0 0 chr6 6007879 6007900 -143509137 + AT_rich Low_complexity Low_complexity 1 21 0 9 630 616 55 4 8 chr6 6008036 6008139 -143508898 + B1_Mm SINE Alu 50 150 0 1 630 252 0 0 0 chr6 6008425 6008453 -143508584 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 630 24 32 0 0 chr6 6009552 6009583 -143507454 + AT_rich Low_complexity Low_complexity 1 31 0 1 630 420 223 205 0 chr6 6009766 6009878 -143507159 - B1_Mur1 SINE Alu -14 135 1 1 630 2906 68 42 5 chr6 6010957 6011339 -143505698 - MTA_Mm LTR MaLR 0 396 1 1 630 2604 127 30 15 chr6 6011749 6012149 -143504888 + MTB_Mm LTR MaLR 2 407 0 1 630 721 114 91 0 chr6 6013245 6013377 -143503660 + ORR1D1 LTR MaLR 2 145 -229 1 630 804 119 0 0 chr6 6013391 6013509 -143503528 + B2_Mm2 SINE B2 1 118 -77 1 630 321 170 358 56 chr6 6013511 6013673 -143503364 + ORR1D1 LTR MaLR 164 374 0 1 630 395 280 27 27 chr6 6014496 6014606 -143502431 + ID_B1 SINE B4 84 193 -31 1 630 180 282 35 0 chr6 6015127 6015212 -143501825 + MIRb SINE MIR 173 260 -8 1 630 3846 41 28 0 chr6 6016168 6016629 -143500408 + MT2C_Mm LTR ERVL 2 475 0 2 630 197 269 60 71 chr6 6017185 6017269 -143499768 - L2c LINE L2 0 3387 3305 2 630 626 237 8 138 chr6 6017628 6017728 -143499309 - L1MC1 LINE L1 -429 5904 5811 2 630 1092 227 0 5 chr6 6017728 6017945 -143499092 - B3 SINE B2 0 216 1 2 630 626 240 13 126 chr6 6017945 6018100 -143498937 - L1MC1 LINE L1 -523 5810 5646 2 630 207 0 0 0 chr6 6018987 6019010 -143498027 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 630 361 290 23 31 chr6 6021464 6021592 -143495445 + RSINE1 SINE B4 11 137 -28 2 630 464 48 16 0 chr6 6021596 6021659 -143495378 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 630 486 219 65 32 chr6 6022406 6022529 -143494508 - B1_Mus1 SINE Alu 0 148 22 2 630 761 268 95 0 chr6 6022750 6022993 -143494044 + B4A SINE B4 1 266 -26 2 630 351 0 0 0 chr6 6023048 6023087 -143493950 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 630 221 53 53 0 chr6 6023119 6023157 -143493880 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 630 616 231 16 8 chr6 6023702 6023824 -143493213 + RSINE1 SINE B4 7 129 -36 3 630 375 23 0 0 chr6 6023824 6023868 -143493169 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 630 26 0 0 0 chr6 6024182 6024208 -143492829 + AT_rich Low_complexity Low_complexity 1 26 0 3 630 249 33 0 0 chr6 6025283 6025313 -143491724 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 630 204 97 0 0 chr6 6026126 6026157 -143490880 + (A)n Simple_repeat Simple_repeat 1 31 0 3 630 1107 240 92 56 chr6 6027339 6027696 -143489341 + ORR1D2 LTR MaLR 1 370 0 3 630 296 303 50 10 chr6 6027783 6027883 -143489154 + ID_B1 SINE B4 87 190 -34 3 630 398 264 11 0 chr6 6028246 6028337 -143488700 - B1F2 SINE Alu -13 136 45 3 630 510 181 38 0 chr6 6028333 6028438 -143488599 - URR1A DNA MER1_type -85 141 33 3 631 23 86 0 0 chr6 6030144 6030202 -143486835 + AT_rich Low_complexity Low_complexity 1 58 0 4 631 383 167 178 0 chr6 6030802 6030892 -143486145 - B1_Mur1 SINE Alu -43 106 1 4 631 189 117 16 32 chr6 6032927 6032989 -143484048 + (CAAA)n Simple_repeat Simple_repeat 1 61 0 4 631 283 253 121 0 chr6 6033963 6034054 -143482983 + RMER30 DNA MER1_type 99 200 -2 4 631 429 275 86 59 chr6 6034065 6034285 -143482752 + MLT1B LTR MaLR 1 226 -164 4 631 1224 116 26 0 chr6 6034899 6035088 -143481949 + B2_Mm2 SINE B2 2 195 0 4 631 265 273 79 57 chr6 6035378 6035518 -143481519 - MLT1A0 LTR MaLR -65 300 158 4 631 21 0 0 0 chr6 6036393 6036414 -143480623 + AT_rich Low_complexity Low_complexity 1 21 0 4 631 272 231 62 52 chr6 6037591 6037687 -143479350 + MLT1H2 LTR MaLR 252 348 -247 4 631 291 233 31 77 chr6 6037751 6037881 -143479156 + MLT1H2 LTR MaLR 329 452 -37 4 631 349 274 41 25 chr6 6038983 6039121 -143477916 - B1F SINE Alu -8 141 2 4 631 532 293 126 0 chr6 6040036 6040227 -143476810 + B3 SINE B2 1 215 -1 5 631 690 72 0 0 chr6 6040376 6040473 -143476564 + (CA)n Simple_repeat Simple_repeat 1 97 0 5 631 430 282 9 9 chr6 6040491 6040602 -143476435 + PB1D10 SINE Alu 2 112 -5 5 631 288 338 22 8 chr6 6040690 6040824 -143476213 + B1F SINE Alu 1 136 -13 5 631 377 319 86 23 chr6 6041093 6041350 -143475687 - B4A SINE B4 -18 274 2 5 631 310 67 67 0 chr6 6041571 6041631 -143475406 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 5 631 506 140 9 0 chr6 6042902 6043016 -143474021 + (CA)n Simple_repeat Simple_repeat 2 116 0 5 631 400 293 70 41 chr6 6043750 6043921 -143473116 + B3A SINE B2 2 177 -21 5 631 204 40 0 0 chr6 6043921 6043946 -143473091 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 5 631 216 97 0 0 chr6 6044358 6044389 -143472648 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 5 631 22 0 0 0 chr6 6045389 6045411 -143471626 + AT_rich Low_complexity Low_complexity 1 22 0 6 631 475 280 8 16 chr6 6045710 6045837 -143471200 + B3A SINE B2 8 133 -65 6 631 258 32 0 0 chr6 6047312 6047343 -143469694 + (TATG)n Simple_repeat Simple_repeat 3 33 0 6 631 622 237 15 0 chr6 6047384 6047515 -143469522 - B1_Mur1 SINE Alu -15 134 2 6 631 342 0 0 0 chr6 6047574 6047612 -143469425 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 631 196 232 114 14 chr6 6048508 6048578 -143468459 - MIR SINE MIR -28 234 158 6 631 1736 145 81 9 chr6 6049273 6049607 -143467430 + ORR1B1 LTR MaLR 29 386 -8 6 631 201 400 21 0 chr6 6050438 6050533 -143466504 - MIRb SINE MIR 0 268 172 6 631 234 0 0 0 chr6 6050905 6050931 -143466106 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 631 423 0 0 0 chr6 6051391 6051438 -143465599 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 631 21 71 0 0 chr6 6052406 6052448 -143464589 + AT_rich Low_complexity Low_complexity 1 42 0 7 631 263 330 73 36 chr6 6052517 6052737 -143464300 + MIR SINE MIR 14 241 -21 7 631 408 40 0 0 chr6 6053545 6053595 -143463442 + (TCC)n Simple_repeat Simple_repeat 1 50 0 7 631 261 0 0 0 chr6 6054782 6054811 -143462226 + (A)n Simple_repeat Simple_repeat 1 29 0 7 631 429 129 0 0 chr6 6054981 6055051 -143461986 + (T)n Simple_repeat Simple_repeat 1 70 0 7 631 750 288 49 3 chr6 6058292 6058578 -143458459 - Tigger7 DNA MER2_type -29 2462 2164 7 631 371 293 96 22 chr6 6058637 6058773 -143458264 - Tigger7 DNA MER2_type -2328 163 18 7 631 24 0 0 0 chr6 6058920 6058944 -143458093 + AT_rich Low_complexity Low_complexity 1 24 0 7 631 1133 42 7 40 chr6 6059460 6059610 -143457427 - B1_Mus2 SINE Alu -1 146 2 7 631 364 257 97 0 chr6 6060638 6060743 -143456294 + B1_Mur1 SINE Alu 5 120 -29 7 631 413 121 43 11 chr6 6060859 6060951 -143456086 - L1Md_F2 LINE L1 0 6582 6488 7 631 601 238 111 45 chr6 6060978 6061176 -143455861 + B3 SINE B2 1 211 -5 8 631 744 250 63 26 chr6 6061258 6061447 -143455590 - B3 SINE B2 -6 210 15 8 631 503 141 0 11 chr6 6061521 6061614 -143455423 + (TA)n Simple_repeat Simple_repeat 2 93 0 8 631 210 71 0 0 chr6 6063207 6063235 -143453802 + (A)n Simple_repeat Simple_repeat 1 28 0 8 631 586 358 68 9 chr6 6066578 6066899 -143450138 + MER2 DNA MER2_type 6 345 0 8 631 419 276 31 62 chr6 6067471 6067612 -143449425 + ID_B1 SINE B4 67 208 -16 8 631 1450 186 148 35 chr6 6067612 6067957 -143449080 - ORR1C2 LTR MaLR 0 384 1 8 631 419 276 31 62 chr6 6067957 6067977 -143449060 + ID_B1 SINE B4 209 223 -1 8 631 567 0 0 0 chr6 6068107 6068170 -143448867 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 8 631 211 50 0 70 chr6 6070308 6070351 -143446686 + (CAAAA)n Simple_repeat Simple_repeat 4 43 0 8 631 477 0 0 0 chr6 6070721 6070774 -143446263 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 631 630 266 38 5 chr6 6070916 6071101 -143445936 - ID_B1 SINE B4 -29 195 5 9 631 190 293 70 63 chr6 6072231 6072373 -143444664 - MIR3 SINE MIR -62 146 4 9 631 414 0 0 0 chr6 6072516 6072562 -143444475 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 631 252 0 0 0 chr6 6072562 6072589 -143444448 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 631 486 49 0 0 chr6 6072986 6073047 -143443990 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 631 277 323 32 21 chr6 6073079 6073174 -143443863 - PB1D10 SINE Alu -21 96 1 9 631 1125 36 57 0 chr6 6073210 6073350 -143443687 - B1_Mus1 SINE Alu 0 148 1 9 631 1035 66 0 0 chr6 6073403 6073539 -143443498 + (GAAA)n Simple_repeat Simple_repeat 1 136 0 9 631 565 284 101 43 chr6 6074634 6074910 -143442127 - B4A SINE B4 0 292 1 9 631 2193 153 152 43 chr6 6074992 6075404 -143441633 - RLTR31_Mm LTR ERVK 0 561 94 9 631 486 0 0 0 chr6 6075404 6075458 -143441579 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 631 2193 153 152 43 chr6 6075458 6075551 -143441486 - RLTR31_Mm LTR ERVK -468 93 2 9 631 1204 64 6 6 chr6 6076476 6076648 -143440389 + (TTCC)n Simple_repeat Simple_repeat 3 174 0 1 631 193 119 23 23 chr6 6076653 6076696 -143440341 + CT-rich Low_complexity Low_complexity 3 45 0 1 631 680 121 105 0 chr6 6076720 6076844 -143440193 - B1_Mus2 SINE Alu -1 146 10 1 631 453 242 47 55 chr6 6076978 6077105 -143439932 + B1_Mur1 SINE Alu 21 146 -3 1 631 1774 161 115 16 chr6 6077803 6078176 -143438861 - MTC LTR MaLR -11 410 1 1 631 346 258 10 40 chr6 6079065 6079166 -143437871 - PB1D7 SINE Alu -19 101 4 1 631 724 238 85 85 chr6 6079364 6079694 -143437343 + RLTR14 LTR ERV1 11 340 -42 1 631 780 87 0 0 chr6 6079769 6079896 -143437141 + (CA)n Simple_repeat Simple_repeat 1 127 0 1 631 290 163 0 0 chr6 6080843 6080892 -143436145 - B3A SINE B2 -149 49 1 1 631 854 184 108 21 chr6 6081119 6081313 -143435724 + B3 SINE B2 1 211 -5 1 631 207 0 0 0 chr6 6081369 6081392 -143435645 + (T)n Simple_repeat Simple_repeat 1 23 0 1 631 1029 45 0 0 chr6 6081392 6081526 -143435511 - B1_Mus1 SINE Alu 0 148 15 1 631 208 244 0 0 chr6 6081576 6081617 -143435420 + A-rich Low_complexity Low_complexity 4 44 0 1 631 1164 272 35 55 chr6 6082033 6082399 -143434638 + ORR1E LTR MaLR 1 359 0 1 631 1004 109 0 0 chr6 6082659 6082796 -143434241 - B1_Mus1 SINE Alu -11 137 1 1 631 324 0 0 0 chr6 6083005 6083041 -143433996 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 631 241 77 19 37 chr6 6085622 6085676 -143431361 + (TTTTTG)n Simple_repeat Simple_repeat 1 53 0 1 631 1128 29 58 0 chr6 6085676 6085815 -143431222 - B1_Mm SINE Alu 0 147 1 1 631 869 196 91 25 chr6 6086939 6087138 -143429899 - B3 SINE B2 -4 212 1 1 631 399 278 29 0 chr6 6087690 6087795 -143429242 + PB1D7 SINE Alu 5 112 -8 1 631 244 307 35 52 chr6 6087985 6088157 -143428880 + L1MB7 LINE L1 4235 4403 -1743 1 631 356 288 80 36 chr6 6088254 6088269 -143428768 + ID_B1 SINE B4 78 219 -4 1 631 450 240 99 0 chr6 6088269 6088390 -143428647 + B1F SINE Alu 12 144 -5 1 631 863 203 0 7 chr6 6088598 6088747 -143428290 - B1_Mur4 SINE Alu 0 150 3 1 631 1942 168 68 61 chr6 6088970 6089413 -143427624 - RLTR41 LTR ERV1 0 446 1 1 631 237 108 0 0 chr6 6089580 6089617 -143427420 + (A)n Simple_repeat Simple_repeat 1 37 0 1 631 1203 41 0 27 chr6 6089791 6089941 -143427096 - B1_Mus1 SINE Alu -1 147 2 1 631 302 315 45 9 chr6 6089964 6090073 -143426964 - B3A SINE B2 -30 168 56 1 631 3733 204 108 5 chr6 6090073 6090845 -143426192 + RLTR25B LTR ERVK 1 845 -183 1 631 441 0 0 0 chr6 6090845 6090894 -143426143 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 631 3733 204 108 5 chr6 6090894 6091053 -143425984 + RLTR25B LTR ERVK 846 1027 -1 1 631 313 214 43 0 chr6 6091053 6091113 -143425924 - B3A SINE B2 -134 64 2 1 631 733 267 152 62 chr6 6091158 6091718 -143425319 + L1MB7 LINE L1 5320 5929 -255 1 631 340 143 114 0 chr6 6091768 6091838 -143425199 + RSINE1 SINE B4 86 163 -2 1 631 463 296 15 29 chr6 6091888 6091950 -143425087 + L1MB7 LINE L1 5937 5995 -189 1 631 198 0 0 0 chr6 6091950 6091972 -143425065 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 631 463 296 15 29 chr6 6091972 6092114 -143424923 + L1MB7 LINE L1 5996 6138 -46 1 631 256 296 30 20 chr6 6093785 6093885 -143423152 - MER5A DNA MER1_type -35 154 54 1 631 332 127 0 18 chr6 6094945 6095001 -143422036 + HAL1-3A_ME LINE L1 1976 2030 -828 1 631 375 137 0 0 chr6 6095013 6095086 -143421951 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 631 223 281 31 0 chr6 6095087 6095151 -143421886 + (CAGA)n Simple_repeat Simple_repeat 2 67 0 1 631 21 36 0 0 chr6 6095288 6095316 -143421721 + AT_rich Low_complexity Low_complexity 1 28 0 1 631 238 275 103 21 chr6 6096816 6097010 -143420027 + L2a LINE L2 3097 3363 -63 1 631 219 88 0 0 chr6 6097296 6097330 -143419707 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 631 655 193 170 0 chr6 6098684 6098855 -143418182 + ORR1D1 LTR MaLR 175 374 0 1 631 1012 320 30 15 chr6 6099305 6099641 -143417396 + ORR1E LTR MaLR 14 354 -5 1 631 997 281 77 55 chr6 6100254 6100619 -143416418 + MTEb LTR MaLR 7 379 0 1 631 2746 184 21 49 chr6 6101285 6101857 -143415180 + Lx6 LINE L1 6524 7079 -381 1 631 513 154 0 0 chr6 6101857 6101948 -143415089 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 631 291 162 0 0 chr6 6101947 6102027 -143415010 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 1 631 744 171 49 31 chr6 6102131 6102294 -143414743 + Lx7 LINE L1 7521 7686 -10 1 631 312 120 0 0 chr6 6102294 6102344 -143414693 + (GGGAGA)n Simple_repeat Simple_repeat 6 55 0 1 631 456 236 114 0 chr6 6103111 6103251 -143413786 + B3A SINE B2 1 156 -42 1 631 369 75 0 0 chr6 6103259 6103312 -143413725 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 631 653 302 102 50 chr6 6104841 6105280 -143411757 + MLT1C LTR MaLR 4 465 -2 1 631 622 274 28 33 chr6 6106614 6106825 -143410212 + B3 SINE B2 7 216 0 1 631 1128 61 0 13 chr6 6107739 6107888 -143409149 - B1_Mus1 SINE Alu 0 148 2 1 631 284 285 33 65 chr6 6107897 6107951 -143409086 + L1M5 LINE L1 5565 5618 -506 1 631 2534 148 37 0 chr6 6107951 6108357 -143408680 - MTC LTR MaLR 0 421 1 1 631 284 285 33 65 chr6 6108357 6108486 -143408551 + L1M5 LINE L1 5619 5742 -382 1 631 300 291 116 16 chr6 6108639 6108768 -143408269 + B1F SINE Alu 1 142 -7 1 631 324 0 0 0 chr6 6109213 6109249 -143407788 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 631 210 118 0 0 chr6 6109719 6109753 -143407284 + (GGA)n Simple_repeat Simple_repeat 3 36 0 1 631 433 126 11 84 chr6 6111672 6111767 -143405270 + B3 SINE B2 126 213 -3 1 631 197 65 0 31 chr6 6112871 6112903 -143404134 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1 631 246 227 27 0 chr6 6114127 6114202 -143402835 - L1MA9 LINE L1 -76 6236 6160 1 631 21 36 0 0 chr6 6114310 6114338 -143402699 + AT_rich Low_complexity Low_complexity 1 28 0 1 631 258 197 0 0 chr6 6114638 6114699 -143402338 + Lx5 LINE L1 6978 7038 -12 1 631 186 43 0 0 chr6 6114701 6114724 -143402313 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1 631 231 88 0 0 chr6 6116786 6116820 -143400217 + (CATA)n Simple_repeat Simple_repeat 2 35 0 1 631 239 286 86 0 chr6 6116960 6117030 -143400007 + MLT2B2 LTR ERVL 8 83 -432 1 631 611 268 44 88 chr6 6117262 6117512 -143399525 - B4A SINE B4 -19 273 35 1 631 291 184 79 0 chr6 6118958 6119034 -143398003 - MLT1A1 LTR MaLR -326 82 1 1 631 236 296 94 6 chr6 6119433 6119603 -143397434 + L2 LINE L2 861 1045 -2374 1 631 358 212 0 0 chr6 6119695 6119761 -143397276 + ID4_ SINE ID 5 70 -13 1 631 180 0 0 0 chr6 6119777 6119797 -143397240 + (A)n Simple_repeat Simple_repeat 1 20 0 1 631 380 231 0 119 chr6 6119967 6120085 -143396952 + ORR1E LTR MaLR 4 107 -252 1 631 642 268 161 50 chr6 6121762 6122407 -143394630 - Charlie1 DNA MER1_type -58 2723 2007 1 631 26 30 0 0 chr6 6122411 6122444 -143394593 + AT_rich Low_complexity Low_complexity 1 33 0 1 631 632 275 134 22 chr6 6122681 6122949 -143394088 - MLT1A0 LTR MaLR -53 312 15 1 631 228 221 87 14 chr6 6123057 6123126 -143393911 - Charlie1 DNA MER1_type -2707 74 1 1 631 242 269 144 25 chr6 6124587 6124705 -143392332 + MER2 DNA MER2_type 72 203 -142 1 631 1234 54 0 0 chr6 6124751 6124898 -143392139 + B1_Mm SINE Alu 1 147 0 1 631 189 0 0 0 chr6 6124898 6124919 -143392118 + (A)n Simple_repeat Simple_repeat 1 21 0 1 631 243 61 0 0 chr6 6125396 6125429 -143391608 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1 631 490 294 224 0 chr6 6126191 6126361 -143390676 + B3 SINE B2 1 208 -8 1 631 817 144 65 0 chr6 6126497 6126636 -143390401 + B1_Mus1 SINE Alu 1 148 0 1 631 573 190 8 24 chr6 6126637 6126884 -143390153 + GA-rich Low_complexity Low_complexity 1 242 0 1 631 402 204 139 0 chr6 6127712 6127820 -143389217 + B1_Mus2 SINE Alu 5 127 -20 1 631 257 227 0 0 chr6 6127820 6127886 -143389151 + A-rich Low_complexity Low_complexity 3 68 0 1 631 555 16 0 0 chr6 6127895 6127959 -143389078 + (GGGA)n Simple_repeat Simple_repeat 1 64 0 1 631 451 216 41 10 chr6 6128059 6128157 -143388880 + PB1D10 SINE Alu 3 103 -14 1 631 201 74 0 0 chr6 6128289 6128316 -143388721 + (T)n Simple_repeat Simple_repeat 1 27 0 1 631 1092 68 7 0 chr6 6128316 6128462 -143388575 - B1_Mus1 SINE Alu 0 148 2 1 631 2143 150 79 26 chr6 6128516 6129042 -143387995 + RLTR17 LTR ERVK 98 692 0 1 631 830 296 57 24 chr6 6129079 6129411 -143387626 + L1MA7 LINE L1 5662 6004 -287 1 631 280 266 181 33 chr6 6129537 6129747 -143387290 + L1MA8 LINE L1 5954 6194 -97 1 631 24 53 0 0 chr6 6129776 6129814 -143387223 + AT_rich Low_complexity Low_complexity 1 38 0 1 631 612 132 26 0 chr6 6129814 6129928 -143387109 + B1_Mus2 SINE Alu 25 141 -6 1 631 280 247 104 31 chr6 6131303 6131399 -143385638 + MER20 DNA MER1_type 1 103 -116 1 631 251 286 65 11 chr6 6131416 6131508 -143385529 - PB1D10 SINE Alu -14 103 7 1 631 260 277 0 0 chr6 6131744 6131809 -143385228 + MER57E1 LTR ERV1 267 331 -41 1 631 267 332 43 51 chr6 6132191 6132426 -143384611 + MIR SINE MIR 8 240 -22 1 631 205 176 0 0 chr6 6132451 6132485 -143384552 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1 631 570 274 12 44 chr6 6132490 6132650 -143384387 - RSINE1 SINE B4 -8 157 3 1 631 409 336 48 28 chr6 6133062 6133313 -143383724 - L1M5 LINE L1 -349 5775 5520 2 631 673 160 8 0 chr6 6134246 6134365 -143382672 + B3 SINE B2 1 120 -96 2 631 50 0 0 0 chr6 6134409 6134459 -143382578 + AT_rich Low_complexity Low_complexity 1 50 0 2 631 293 176 0 29 chr6 6134465 6134535 -143382502 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 2 631 304 280 56 126 chr6 6134537 6134727 -143382310 + L1M5 LINE L1 5550 5740 -433 2 631 1621 26 0 20 chr6 6134727 6134923 -143382114 + B2_Mm1a SINE B2 1 192 -1 2 631 304 280 56 126 chr6 6134923 6135018 -143382019 + L1M5 LINE L1 5741 5814 -359 2 631 25 0 0 0 chr6 6136066 6136091 -143380946 + AT_rich Low_complexity Low_complexity 1 25 0 2 631 38 39 0 0 chr6 6136303 6136355 -143380682 + AT_rich Low_complexity Low_complexity 1 52 0 2 631 590 162 86 22 chr6 6136527 6136666 -143380371 + B1_Mus1 SINE Alu 1 148 0 2 631 220 172 35 0 chr6 6136668 6136726 -143380311 + A-rich Low_complexity Low_complexity 3 62 0 2 631 215 241 35 0 chr6 6137089 6137147 -143379890 + GA-rich Low_complexity Low_complexity 1 60 0 2 631 498 17 0 0 chr6 6137468 6137527 -143379510 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 631 612 202 23 8 chr6 6137622 6137752 -143379285 + B1_Mur2 SINE Alu 17 148 -1 2 631 195 188 0 0 chr6 6139670 6139718 -143377319 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 631 390 254 93 132 chr6 6139808 6140012 -143377025 - B3A SINE B2 0 198 3 2 631 296 250 53 0 chr6 6143215 6143291 -143373746 - MIRc SINE MIR -73 195 116 2 631 336 327 10 0 chr6 6143452 6143553 -143373484 + PB1D10 SINE Alu 7 108 -9 2 631 249 338 20 92 chr6 6145108 6145261 -143371776 + ID_B1 SINE B4 81 222 -2 2 631 1362 79 23 0 chr6 6145414 6145591 -143371446 + B2_Mm2 SINE B2 1 181 -14 2 631 297 0 0 0 chr6 6145591 6145624 -143371413 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 631 516 294 117 35 chr6 6145844 6146126 -143370911 + ORR1E LTR MaLR 3 307 -52 2 631 276 120 0 0 chr6 6146152 6146202 -143370835 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 631 302 335 48 6 chr6 6147064 6147229 -143369808 + MLT1N2 LTR MaLR 391 562 0 2 631 2210 143 7 25 chr6 6148135 6148543 -143368494 + RLTR9E LTR ERVK 7 407 -2 2 631 509 282 150 26 chr6 6148699 6148892 -143368145 + ID_B1 SINE B4 2 218 -6 2 631 189 154 0 0 chr6 6148938 6148977 -143368060 + GA-rich Low_complexity Low_complexity 1 39 0 2 631 1860 188 71 11 chr6 6150507 6150888 -143366149 + MTC LTR MaLR 13 416 -5 2 631 241 200 0 43 chr6 6151172 6151219 -143365818 + B1_Mur2 SINE Alu 61 105 -44 2 631 202 194 0 0 chr6 6151219 6151255 -143365782 + G-rich Low_complexity Low_complexity 4 39 0 2 631 441 189 85 0 chr6 6151267 6151373 -143365664 + B3 SINE B2 1 115 -101 2 631 251 247 12 58 chr6 6151356 6151442 -143365595 + B1_Mur1 SINE Alu 63 144 -5 2 631 674 167 8 0 chr6 6151465 6151597 -143365440 + GA-rich Low_complexity Low_complexity 4 136 0 2 631 261 284 0 26 chr6 6151685 6151761 -143365276 + A-rich Low_complexity Low_complexity 2 75 0 2 631 794 301 50 35 chr6 6152869 6153151 -143363886 + B4A SINE B4 1 286 -6 2 631 200 35 35 0 chr6 6153151 6153180 -143363857 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2 631 261 255 117 10 chr6 6155227 6155330 -143361707 + MLT1B LTR MaLR 1 114 -276 2 631 437 141 12 0 chr6 6155420 6155505 -143361532 + GA-rich Low_complexity Low_complexity 2 87 0 2 631 513 295 59 20 chr6 6155515 6155719 -143361318 + MLT1B LTR MaLR 171 382 -8 2 631 478 269 8 0 chr6 6157095 6157214 -143359823 + B1_Mur2 SINE Alu 25 144 -5 2 631 204 40 0 0 chr6 6157221 6157246 -143359791 + (TGGA)n Simple_repeat Simple_repeat 2 26 0 2 631 2033 99 38 77 chr6 6157247 6157586 -143359451 - ORR1A3 LTR MaLR 0 326 1 2 631 377 237 71 142 chr6 6157597 6157794 -143359243 + MIR SINE MIR 31 213 -49 2 631 1605 200 59 39 chr6 6158990 6159380 -143357657 - RMER10B LTR ERVL 0 398 1 2 632 1118 84 401 5 chr6 6160505 6160723 -143356314 + ORR1A3 LTR MaLR 1 326 0 2 632 2288 139 78 18 chr6 6161311 6161707 -143355330 + MTC LTR MaLR 2 421 0 2 632 347 269 16 65 chr6 6162491 6162614 -143354423 + ID_B1 SINE B4 86 202 -22 2 632 528 16 0 0 chr6 6163484 6163545 -143353492 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 632 453 252 104 0 chr6 6164809 6164944 -143352093 + B1F2 SINE Alu 1 149 0 2 632 389 191 209 43 chr6 6165137 6165252 -143351785 - B1_Mm SINE Alu -13 134 1 2 632 207 88 0 0 chr6 6167771 6167805 -143349232 + (A)n Simple_repeat Simple_repeat 1 34 0 2 632 376 344 151 22 chr6 6168331 6168563 -143348474 + MLT1A1 LTR MaLR 146 407 -1 2 632 247 274 140 50 chr6 6168804 6168904 -143348133 + PB1D10 SINE Alu 8 116 -1 2 632 455 221 89 8 chr6 6169239 6169362 -143347675 + MLT1C LTR MaLR 45 177 -290 2 632 256 273 79 47 chr6 6169369 6169496 -143347541 + B1_Mur3 SINE Alu 4 134 -15 2 632 459 309 95 35 chr6 6169509 6169740 -143347297 + MLT1C LTR MaLR 223 467 0 2 632 231 213 0 0 chr6 6170307 6170354 -143346683 + GA-rich Low_complexity Low_complexity 3 49 0 2 632 394 206 108 36 chr6 6170441 6170552 -143346485 - PB1D9 SINE Alu -1 119 1 2 632 240 337 79 64 chr6 6170584 6170850 -143346187 - MLT1D LTR MaLR -132 373 104 2 632 562 203 73 48 chr6 6170893 6171017 -143346020 + B1_Mur1 SINE Alu 9 135 -14 2 632 237 268 14 27 chr6 6171017 6171090 -143345947 + GA-rich Low_complexity Low_complexity 3 74 0 2 632 402 240 183 20 chr6 6171090 6171243 -143345794 - MLT1B LTR MaLR -28 362 185 2 632 186 71 0 0 chr6 6171531 6171559 -143345478 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 632 677 168 40 0 chr6 6171559 6171684 -143345353 - B1_Mur4 SINE Alu -20 130 1 2 632 248 298 31 102 chr6 6171578 6171705 -143345332 - MT2B LTR ERVL -343 258 141 2 632 403 247 44 25 chr6 6172172 6172330 -143344707 - LTR31 LTR ERV1 -65 554 394 2 632 315 0 0 0 chr6 6172636 6172671 -143344366 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 632 541 108 39 0 chr6 6173285 6173340 -143343697 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 632 1004 102 11 22 chr6 6173340 6173520 -143343517 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 2 632 541 108 39 0 chr6 6173520 6173593 -143343444 + (TC)n Simple_repeat Simple_repeat 2 79 0 2 632 1287 223 108 33 chr6 6174058 6174304 -143342733 - ORR1D2 LTR MaLR -2 368 89 2 632 1891 153 92 24 chr6 6174304 6174673 -143342364 - ORR1B1 LTR MaLR 0 394 1 2 632 1287 223 108 33 chr6 6174673 6174760 -143342277 - ORR1D2 LTR MaLR -282 88 10 2 632 324 267 19 19 chr6 6175022 6175125 -143341912 + ORR1E LTR MaLR 9 111 -248 2 632 189 121 0 0 chr6 6175870 6175903 -143341134 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 632 255 60 19 39 chr6 6175924 6175976 -143341061 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 632 402 286 22 54 chr6 6176028 6176250 -143340787 + MER33 DNA MER1_type 44 258 -66 2 632 351 96 0 0 chr6 6176314 6176366 -143340671 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 632 220 0 86 0 chr6 6176454 6176489 -143340548 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2 632 614 294 30 75 chr6 6176853 6177121 -143339916 + B4A SINE B4 29 284 -8 2 632 358 224 153 0 chr6 6177588 6177686 -143339351 - LTR40b LTR ERVL -5 457 345 2 632 23 0 0 0 chr6 6177937 6177960 -143339077 + AT_rich Low_complexity Low_complexity 1 23 0 2 632 336 48 0 0 chr6 6178719 6178761 -143338276 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 632 1069 79 0 0 chr6 6179022 6179161 -143337876 + B1_Mm SINE Alu 1 139 -8 2 632 882 0 0 0 chr6 6179161 6179259 -143337778 + (GAA)n Simple_repeat Simple_repeat 2 99 0 2 632 2075 101 65 10 chr6 6180180 6180490 -143336547 - ORR1A2 LTR MaLR 0 327 1 2 632 248 286 0 0 chr6 6181637 6181693 -143335344 + ID4 SINE ID 5 60 -23 2 632 683 44 0 11 chr6 6181907 6181999 -143335038 + (CATATA)n Simple_repeat Simple_repeat 5 95 0 2 632 429 20 0 0 chr6 6183086 6183136 -143333901 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 632 878 0 10 0 chr6 6183136 6183237 -143333800 + (CA)n Simple_repeat Simple_repeat 1 103 0 2 632 1335 282 61 21 chr6 6183788 6184364 -143332673 - L1MB4 LINE L1 -42 6138 5540 2 632 376 320 0 0 chr6 6185419 6185519 -143331518 + PB1D10 SINE Alu 6 105 -12 2 632 232 244 22 0 chr6 6185519 6185609 -143331428 + CT-rich Low_complexity Low_complexity 1 92 0 2 632 468 0 0 0 chr6 6185638 6185690 -143331347 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 632 314 262 46 34 chr6 6186045 6186170 -143330867 + L1MB8 LINE L1 6049 6184 0 2 632 287 273 0 0 chr6 6186277 6186343 -143330694 - PB1D10 SINE Alu -5 112 47 2 632 742 287 40 109 chr6 6186326 6186655 -143330382 - MTE2a LTR MaLR -64 315 10 2 632 276 282 321 11 chr6 6186692 6186870 -143330167 - L1MD2 LINE L1 -76 6283 6075 2 632 1115 36 58 0 chr6 6187422 6187560 -143329477 + B1_Mus2 SINE Alu 2 147 0 2 632 231 36 0 0 chr6 6187560 6187588 -143329449 + (A)n Simple_repeat Simple_repeat 1 28 0 2 632 363 270 106 11 chr6 6187774 6187954 -143329083 - L1MD2 LINE L1 -346 6013 5817 2 632 608 167 0 73 chr6 6187954 6188077 -143328960 + B1_Mur3 SINE Alu 17 130 -19 2 632 234 0 0 0 chr6 6189806 6189832 -143327205 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 632 372 302 112 9 chr6 6190449 6190663 -143326374 - MIRb SINE MIR -8 260 25 2 632 5433 46 11 3 chr6 6190663 6191323 -143325714 - L1Md_F2 LINE L1 0 6582 5918 2 632 469 36 0 0 chr6 6191325 6191381 -143325656 + L1Md_F2 LINE L1 5858 5913 -669 2 632 345 266 69 0 chr6 6191514 6191608 -143325429 + B1F1 SINE Alu 3 100 -17 3 632 395 307 72 0 chr6 6191963 6192116 -143324921 - MLT1D LTR MaLR 0 505 342 3 632 544 333 85 7 chr6 6192161 6192466 -143324571 + MER70B LTR ERVL 50 378 -200 3 632 423 137 0 0 chr6 6193177 6193250 -143323787 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 632 389 0 48 16 chr6 6193416 6193478 -143323559 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 3 632 796 158 0 7 chr6 6193479 6193619 -143323418 - B1_Mus2 SINE Alu 0 147 9 3 632 391 213 21 129 chr6 6193524 6193664 -143323373 - MT2B LTR ERVL -343 258 134 3 632 24 32 0 0 chr6 6193677 6193708 -143323329 + AT_rich Low_complexity Low_complexity 1 31 0 3 632 230 205 188 25 chr6 6193785 6193865 -143323172 + B1F SINE Alu 48 140 -9 3 632 704 324 16 16 chr6 6193906 6194157 -143322880 + B4A SINE B4 30 280 -12 3 632 324 0 0 0 chr6 6194179 6194215 -143322822 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 632 225 0 0 0 chr6 6194215 6194239 -143322798 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 632 897 44 0 106 chr6 6194378 6195016 -143322021 + (TTAGGG)n Simple_repeat Simple_repeat 1 570 0 3 632 672 269 27 41 chr6 6195516 6195737 -143321300 + MTEb LTR MaLR 42 259 -120 3 632 505 348 48 13 chr6 6195906 6196220 -143320817 + L2 LINE L2 2348 2672 -747 3 632 700 131 92 0 chr6 6196370 6196500 -143320537 - B1_Mus1 SINE Alu 0 148 7 3 632 282 56 0 0 chr6 6196507 6196543 -143320494 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 3 632 227 271 14 14 chr6 6196572 6196643 -143320394 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 632 290 300 107 82 chr6 6196697 6196820 -143320217 - B4A SINE B4 -85 207 80 3 632 438 20 0 0 chr6 6196820 6196871 -143320166 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 632 290 300 107 82 chr6 6196871 6196943 -143320094 - B4A SINE B4 -213 79 8 3 632 205 222 40 53 chr6 6196943 6197019 -143320018 + L2a LINE L2 3340 3414 -12 3 632 265 328 16 25 chr6 6197085 6197207 -143319830 + B3A SINE B2 2 122 -76 3 632 357 82 0 0 chr6 6197229 6197278 -143319759 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 632 741 58 10 0 chr6 6197978 6198082 -143318955 + B1_Mus2 SINE Alu 43 147 0 3 632 482 159 83 90 chr6 6198108 6198253 -143318784 + B1_Mur2 SINE Alu 5 148 -1 3 632 856 247 107 65 chr6 6199474 6199658 -143317379 - MTE2a LTR MaLR -4 375 172 3 632 916 93 13 0 chr6 6199658 6199808 -143317229 + (TCCCC)n Simple_repeat Simple_repeat 5 156 0 3 632 856 247 107 65 chr6 6199808 6199978 -143317059 - MTE2a LTR MaLR -208 171 7 3 632 793 187 7 7 chr6 6200252 6200392 -143316645 - B1_Mur4 SINE Alu 0 150 11 3 632 400 300 46 117 chr6 6200418 6200701 -143316336 - L1MC1 LINE L1 -19 6314 6052 3 632 1097 284 24 40 chr6 6200886 6201312 -143315725 - L1MC1 LINE L1 -363 5970 5552 3 632 321 119 0 67 chr6 6201531 6201621 -143315416 + (CAGAGA)n Simple_repeat Simple_repeat 4 87 0 3 632 513 0 0 0 chr6 6201631 6201688 -143315349 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 632 1085 50 50 0 chr6 6202262 6202394 -143314643 + B1_Mm SINE Alu 1 139 -8 3 632 272 48 24 0 chr6 6202394 6202436 -143314601 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 632 2541 154 26 28 chr6 6202507 6203001 -143314036 - Lx LINE L1 0 6654 6162 3 632 332 316 29 63 chr6 6203232 6203438 -143313599 - L1MC5 LINE L1 -419 7542 7344 3 632 246 105 0 0 chr6 6203647 6203685 -143313352 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 632 525 183 0 0 chr6 6204020 6204124 -143312913 + (TATG)n Simple_repeat Simple_repeat 1 104 0 3 632 312 256 186 42 chr6 6204127 6204352 -143312685 - L1MC4 LINE L1 -160 7882 7634 3 632 613 210 0 159 chr6 6204352 6204522 -143312515 - B1_Mur3 SINE Alu -6 143 1 3 632 312 256 186 42 chr6 6204522 6204581 -143312456 - L1MC4 LINE L1 -409 7633 7557 3 632 888 157 69 6 chr6 6204689 6204862 -143312175 - B2_Mm2 SINE B2 -10 185 2 3 632 254 196 0 0 chr6 6204915 6204961 -143312076 - L1MC4 LINE L1 -641 7401 7356 3 632 271 192 27 0 chr6 6205176 6205249 -143311788 + GA-rich Low_complexity Low_complexity 2 76 0 3 632 1321 141 14 14 chr6 6206107 6206323 -143310714 - B3 SINE B2 0 216 1 3 632 198 0 0 0 chr6 6207387 6207409 -143309628 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 632 206 228 18 0 chr6 6207902 6207959 -143309078 + G-rich Low_complexity Low_complexity 3 60 0 3 632 823 234 71 74 chr6 6207974 6208283 -143308754 + MTEb LTR MaLR 64 371 -8 3 632 536 268 83 41 chr6 6208537 6208629 -143308408 + MTE2b LTR MaLR 143 238 -141 3 632 613 201 62 48 chr6 6208629 6208775 -143308262 - B1_Mur2 SINE Alu -1 148 1 3 632 536 234 78 24 chr6 6208775 6208909 -143308128 + MTE2b LTR MaLR 239 369 -10 3 632 858 87 0 0 chr6 6209381 6209519 -143307518 + (GA)n Simple_repeat Simple_repeat 1 138 0 3 632 356 0 23 0 chr6 6209524 6209568 -143307469 + (TTA)n Simple_repeat Simple_repeat 2 46 0 3 632 562 254 14 7 chr6 6210270 6210409 -143306628 - RSINE1 SINE B4 -10 155 16 3 632 351 347 0 0 chr6 6211551 6211675 -143305362 + (TG)n Simple_repeat Simple_repeat 1 124 0 3 632 341 258 71 0 chr6 6211743 6211898 -143305139 - Charlie4a DNA MER1_type -114 394 229 3 632 1413 299 99 26 chr6 6211941 6212436 -143304601 - Lx6 LINE L1 -85 7375 6845 3 632 534 241 8 25 chr6 6212584 6212703 -143304334 - PB1D10 SINE Alu 0 117 1 3 632 682 321 37 42 chr6 6213330 6213684 -143303353 + MLT1B LTR MaLR 28 379 -11 3 632 819 173 0 0 chr6 6213838 6213965 -143303072 + B1_Mur4 SINE Alu 5 131 -19 3 632 333 226 0 0 chr6 6213991 6214053 -143302984 + tRNA-Ala-GCY_ tRNA tRNA 2 63 -12 3 632 267 330 11 0 chr6 6214053 6214074 -143302963 + BC1_Mm scRNA scRNA 7 90 -62 3 632 360 111 0 0 chr6 6214075 6214129 -143302908 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 3 632 255 333 194 8 chr6 6214906 6215148 -143301889 - L3 LINE CR1 -869 3620 3334 3 632 346 188 10 10 chr6 6215302 6215399 -143301638 + CT-rich Low_complexity Low_complexity 1 97 0 3 632 384 22 0 0 chr6 6215653 6215698 -143301339 + (CGGTG)n Simple_repeat Simple_repeat 1 45 0 3 632 596 282 22 11 chr6 6216447 6216613 -143300424 + B4A SINE B4 4 171 -121 3 632 582 277 58 110 chr6 6216613 6216905 -143300132 + RMER5 LTR ERV1 3 279 -255 3 632 200 143 0 67 chr6 6216989 6217049 -143299988 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 632 11448 48 1 1 chr6 6217144 6219208 -143297829 - L1Md_F2 LINE L1 -1 6581 4518 3 632 7929 45 0 0 chr6 6219209 6220178 -143296859 + L1Md_F2 LINE L1 3550 4518 -1365 3 632 656 263 7 13 chr6 6221418 6221572 -143295465 - B3 SINE B2 -41 175 23 3 632 24 32 0 0 chr6 6221586 6221617 -143295420 + AT_rich Low_complexity Low_complexity 1 31 0 3 632 252 259 84 52 chr6 6221704 6221859 -143295178 - Lx8 LINE L1 -50 7423 7264 3 632 293 300 38 0 chr6 6221889 6221969 -143295068 + ID4_ SINE ID 1 83 0 3 632 488 246 23 31 chr6 6222260 6222390 -143294647 + B3A SINE B2 70 198 0 3 632 380 249 71 171 chr6 6222488 6222511 -143294526 + MLT2B1 LTR ERVL 5 24 -496 3 632 315 288 89 117 chr6 6222511 6222582 -143294455 + ORR1E LTR MaLR 1 67 -292 3 632 1297 90 31 16 chr6 6222582 6222773 -143294264 - B2_Mm2 SINE B2 0 195 2 3 632 315 288 89 117 chr6 6222773 6223070 -143293967 + ORR1E LTR MaLR 68 359 0 3 632 380 249 71 171 chr6 6223070 6223327 -143293710 + MLT2B1 LTR ERVL 25 256 -264 3 632 390 306 80 70 chr6 6223733 6223933 -143293104 + MLT2B1 LTR ERVL 249 450 -70 3 632 486 0 0 0 chr6 6224147 6224201 -143292836 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 3 632 595 63 0 130 chr6 6224864 6225064 -143291973 + CT-rich Low_complexity Low_complexity 1 174 0 3 632 743 212 0 16 chr6 6225086 6225268 -143291769 + C-rich Low_complexity Low_complexity 1 179 0 3 632 362 104 0 0 chr6 6225268 6225316 -143291721 + (TCCCC)n Simple_repeat Simple_repeat 4 51 0 3 632 430 228 89 82 chr6 6225319 6225442 -143291595 - ID_B1 SINE B4 -37 187 63 3 632 3903 55 4 0 chr6 6225442 6225917 -143291120 - L1_Mus1 LINE L1 0 6567 6091 3 632 430 228 89 82 chr6 6225917 6225951 -143291086 - ID SINE ID -162 62 29 3 632 552 315 22 6 chr6 6226577 6226756 -143290281 + B3A SINE B2 1 182 -16 3 632 262 255 174 41 chr6 6227113 6227137 -143289900 - PB1D10 SINE Alu -2 115 92 3 632 213 65 0 0 chr6 6227137 6227168 -143289869 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 632 262 255 174 41 chr6 6227168 6227241 -143289796 - PB1D10 SINE Alu -26 91 5 3 632 192 152 0 0 chr6 6227535 6227568 -143289469 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 632 951 278 10 38 chr6 6227569 6227861 -143289176 - B4A SINE B4 -5 287 4 3 632 233 324 0 13 chr6 6228464 6228539 -143288498 + L1M3 LINE L1 5836 5909 -280 3 632 24 0 0 0 chr6 6228745 6228769 -143288268 + AT_rich Low_complexity Low_complexity 1 24 0 3 632 1196 48 0 7 chr6 6229372 6229518 -143287519 + B1_Mus2 SINE Alu 3 147 0 3 632 388 204 34 0 chr6 6229578 6229666 -143287371 + B3 SINE B2 80 170 -46 3 632 730 189 73 6 chr6 6229810 6229975 -143287062 - B3 SINE B2 -40 176 1 3 632 321 300 86 0 chr6 6231320 6231460 -143285577 + MIRm SINE MIR 4 155 -121 3 632 1038 142 0 0 chr6 6232019 6232421 -143284616 + (TG)n Simple_repeat Simple_repeat 1 402 0 3 632 1272 67 0 0 chr6 6232435 6232615 -143284422 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 632 388 271 55 35 chr6 6232654 6232799 -143284238 + RSINE1 SINE B4 11 158 -7 3 632 740 174 0 118 chr6 6236298 6236467 -143280570 - B1_Mur4 SINE Alu -1 149 1 3 632 207 204 0 0 chr6 6236735 6236779 -143280258 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3 632 478 206 39 19 chr6 6236779 6236883 -143280154 - B1F SINE Alu -1 148 43 3 632 1153 66 0 0 chr6 6237458 6237610 -143279427 + L1Md_A LINE L1 6431 6582 0 3 632 335 324 9 0 chr6 6238241 6238346 -143278691 - PB1D10 SINE Alu -10 107 2 3 632 414 0 0 0 chr6 6238812 6238858 -143278179 + (TCCA)n Simple_repeat Simple_repeat 4 49 0 3 632 297 263 16 88 chr6 6239277 6239402 -143277635 - PB1D10 SINE Alu -1 116 1 3 632 223 80 0 57 chr6 6240122 6240175 -143276862 + (TTTTTG)n Simple_repeat Simple_repeat 2 51 0 4 632 242 29 29 0 chr6 6240318 6240353 -143276684 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 632 477 99 0 0 chr6 6241394 6241475 -143275562 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 4 632 306 0 0 0 chr6 6242457 6242491 -143274546 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 4 632 768 22 0 0 chr6 6242507 6242597 -143274440 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 4 632 3083 187 138 31 chr6 6243655 6244437 -143272600 + Lx7 LINE L1 6831 7696 0 4 632 24 67 0 0 chr6 6244475 6244520 -143272517 + AT_rich Low_complexity Low_complexity 1 45 0 4 632 751 93 8 8 chr6 6244984 6245103 -143271934 + (TTCTC)n Simple_repeat Simple_repeat 2 120 0 4 632 369 0 0 0 chr6 6245104 6245145 -143271892 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 4 632 1907 87 27 69 chr6 6245527 6245862 -143271175 - ORR1A4 LTR MaLR -8 321 1 4 632 5334 157 34 50 chr6 6245862 6247195 -143269842 - ORR1A4-int LTR MaLR 0 1792 560 4 632 292 63 0 276 chr6 6247154 6247241 -143269796 - MT2B LTR ERVL -314 287 225 4 632 1745 139 63 40 chr6 6247241 6247541 -143269496 + MERVL_2A-int LTR ERVL 4956 5262 -499 4 632 781 291 45 26 chr6 6247553 6247821 -143269216 + B4 SINE B4 17 289 -3 4 632 28 61 0 0 chr6 6248112 6248161 -143268876 + AT_rich Low_complexity Low_complexity 1 49 0 4 632 683 198 8 0 chr6 6248187 6248308 -143268729 - B3 SINE B2 -93 123 2 4 632 226 214 71 0 chr6 6248752 6248808 -143268229 + ID4_ SINE ID 22 81 -2 4 632 782 259 10 16 chr6 6248759 6248951 -143268086 + ID_B1 SINE B4 34 224 0 4 632 1054 240 123 46 chr6 6250355 6250744 -143266293 + MTD LTR MaLR 1 419 0 4 632 425 283 0 26 chr6 6251934 6252050 -143264987 - PB1D10 SINE Alu -2 115 3 4 632 216 352 68 25 chr6 6252392 6252555 -143264482 + MIR SINE MIR 13 182 -80 4 632 295 274 29 88 chr6 6252611 6252747 -143264290 - MIR SINE MIR -75 201 74 4 632 267 31 0 0 chr6 6254327 6254359 -143262678 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 632 342 45 0 0 chr6 6254400 6254444 -143262593 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 4 632 517 275 85 113 chr6 6254444 6254494 -143262543 - B4 SINE B4 -13 279 224 4 632 423 0 0 0 chr6 6254494 6254541 -143262496 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 4 632 517 275 85 113 chr6 6254541 6254773 -143262264 - B4 SINE B4 -69 223 6 4 632 246 260 0 0 chr6 6255536 6255609 -143261428 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 4 632 319 336 103 0 chr6 6259234 6259380 -143257657 - MER58B DNA MER1_type -49 292 132 4 632 338 264 31 75 chr6 6259728 6259888 -143257149 + Tigger1 DNA MER2_type 1 153 -2265 4 632 228 226 81 0 chr6 6260429 6260491 -143256546 + Tigger1 DNA MER2_type 390 456 -1962 4 632 2892 255 117 25 chr6 6260482 6261599 -143255438 + Tigger1 DNA MER2_type 599 1818 -600 4 632 547 230 13 38 chr6 6261987 6262145 -143254892 + Tigger1 DNA MER2_type 1798 1951 -467 4 632 231 36 0 0 chr6 6262993 6263021 -143254016 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 632 254 29 29 0 chr6 6263644 6263679 -143253358 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 4 632 835 313 148 56 chr6 6264494 6264961 -143252076 + MER45B DNA Tip100 212 721 -319 4 632 225 327 38 25 chr6 6264980 6265140 -143251897 - MamRep434 DNA TcMar -194 232 71 4 632 21 0 0 0 chr6 6266218 6266239 -143250798 + AT_rich Low_complexity Low_complexity 1 21 0 4 632 1335 95 9 45 chr6 6269074 6269093 -143247944 + L1Md_F2 LINE L1 6371 6389 -193 4 632 3284 64 68 17 chr6 6269093 6269552 -143247485 - RLTR45 LTR ERVK 0 482 1 4 632 1335 95 9 45 chr6 6269552 6269752 -143247285 + L1Md_F2 LINE L1 6390 6582 0 4 632 323 0 48 0 chr6 6269841 6269883 -143247154 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 4 632 21 0 0 0 chr6 6270136 6270157 -143246880 + AT_rich Low_complexity Low_complexity 1 21 0 4 632 189 0 0 0 chr6 6270290 6270311 -143246726 + (A)n Simple_repeat Simple_repeat 1 21 0 4 632 1863 125 53 0 chr6 6270664 6270967 -143246070 - ORR1A2 LTR MaLR -8 319 1 4 632 420 249 0 0 chr6 6271084 6271178 -143245859 - PB1D9 SINE Alu -8 112 19 4 632 201 133 0 0 chr6 6271510 6271540 -143245497 + (AGGGGG)n Simple_repeat Simple_repeat 2 31 0 4 632 267 104 0 0 chr6 6272216 6272264 -143244773 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 4 632 459 0 0 0 chr6 6272786 6272837 -143244200 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 632 521 254 24 158 chr6 6273608 6273861 -143243176 - ID_B1 SINE B4 -4 220 2 4 632 382 203 28 43 chr6 6274420 6274555 -143242482 - L1ME3 LINE L1 -3 6170 6037 4 632 250 226 48 0 chr6 6274629 6274691 -143242346 - L1ME3 LINE L1 -248 5914 5850 4 632 219 350 0 0 chr6 6274830 6274890 -143242147 + B4A SINE B4 1 60 -232 4 632 245 51 0 25 chr6 6275001 6275041 -143241996 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 4 632 603 352 9 24 chr6 6275044 6275373 -143241664 + Lx9 LINE L1 7146 7469 -175 4 632 205 296 12 36 chr6 6275560 6275644 -143241393 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 4 632 366 271 226 35 chr6 6275733 6275932 -143241105 + MTD LTR MaLR 170 406 -13 4 632 379 263 81 73 chr6 6276219 6276465 -143240572 - L1M4c LINE L1 -4694 1690 1443 4 632 189 0 0 0 chr6 6276466 6276487 -143240550 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 632 901 295 105 33 chr6 6276499 6277174 -143239863 - L1M3de LINE L1 -4600 2053 1304 4 632 752 71 257 0 chr6 6277188 6277301 -143239736 - B1_Mus1 SINE Alu -5 143 2 4 632 2626 220 62 38 chr6 6277392 6277698 -143239339 - ORR1D2-int LTR MaLR 0 1370 1053 4 632 3801 15 0 0 chr6 6277698 6278094 -143238943 + MTA_Mm LTR MaLR 1 396 0 4 632 2626 220 62 38 chr6 6278094 6278388 -143238649 - ORR1D2-int LTR MaLR -318 1052 754 4 632 2405 152 5 78 chr6 6278388 6278822 -143238215 + RLTR25B LTR ERVK 1 402 -626 4 632 1660 231 69 33 chr6 6278823 6279349 -143237688 - RLTR20A LTR ERVK 0 577 24 4 632 589 167 24 48 chr6 6279356 6279482 -143237555 + RLTR25B LTR ERVK 401 523 -580 4 632 809 166 215 120 chr6 6279407 6279681 -143237356 + ORR1A3-int LTR MaLR 499 798 -1165 4 632 1223 139 109 0 chr6 6279510 6279711 -143237326 + MT2B LTR ERVL 35 257 -344 4 632 288 0 0 0 chr6 6280285 6280317 -143236720 + (T)n Simple_repeat Simple_repeat 1 32 0 4 632 966 197 34 0 chr6 6280317 6280556 -143236481 + ORR1A3-int LTR MaLR 721 967 -996 4 632 451 187 45 162 chr6 6280544 6280602 -143236435 + RLTR25B LTR ERVK 641 700 -328 4 632 432 0 0 0 chr6 6280602 6280650 -143236387 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 632 502 191 76 98 chr6 6280650 6280857 -143236180 + RLTR25B LTR ERVK 701 1028 0 4 632 1693 255 26 28 chr6 6280857 6281325 -143235712 - ORR1D2-int LTR MaLR -611 759 293 4 632 660 243 151 5 chr6 6281304 6281490 -143235547 - B3 SINE B2 0 216 4 4 632 292 145 62 31 chr6 6281504 6281568 -143235469 - B1_Mm SINE Alu 0 147 82 4 632 407 279 25 0 chr6 6281913 6281992 -143235045 - B1_Mur3 SINE Alu -65 84 4 4 632 763 241 10 52 chr6 6281994 6282187 -143234850 - ORR1D2-int LTR MaLR -1046 324 140 4 632 645 172 98 0 chr6 6282796 6282918 -143234119 - ORR1D2-int LTR MaLR -1232 138 5 4 632 1132 262 80 19 chr6 6282913 6283224 -143233813 - ORR1D2 LTR MaLR -40 330 1 4 632 323 269 40 56 chr6 6284477 6284603 -143232434 + L2 LINE L2 2737 2860 -559 4 632 242 267 0 16 chr6 6286191 6286252 -143230785 - BC1_Mm scRNA scRNA -49 103 44 4 632 186 97 0 88 chr6 6286331 6286365 -143230672 - MIR3 SINE MIR -23 185 155 4 632 3642 35 0 0 chr6 6287192 6287588 -143229449 - MTA_Mm LTR MaLR 0 396 1 4 632 259 354 52 68 chr6 6288243 6288434 -143228603 - MIR SINE MIR -55 207 20 4 632 216 315 0 0 chr6 6290992 6291046 -143225991 + RSINE1 SINE B4 95 148 -17 4 632 183 100 0 0 chr6 6291068 6291098 -143225939 + (A)n Simple_repeat Simple_repeat 1 30 0 4 9 671 256 179 16 chr6 6291225 6291471 -143225566 - RMER15 LTR ERVL -17 558 273 4 633 234 298 52 30 chr6 6291561 6291696 -143225341 + L1M1 LINE L1 5775 5912 -391 4 633 571 217 8 17 chr6 6291737 6291854 -143225183 + B1_Mur1 SINE Alu 34 149 0 4 633 35 24 0 0 chr6 6293677 6293719 -143223318 + AT_rich Low_complexity Low_complexity 1 42 0 4 633 237 262 78 47 chr6 6293721 6293849 -143223188 - Zaphod DNA Tip100 -68 3963 3832 4 633 443 331 181 48 chr6 6294026 6294524 -143222513 - Zaphod DNA Tip100 -3414 617 54 4 633 7755 97 10 6 chr6 6294631 6296280 -143220757 - L1_Mus4 LINE L1 -1 6635 4987 4 633 1970 185 62 0 chr6 6296299 6296651 -143220386 + ORR1D1 LTR MaLR 1 374 0 4 633 213 261 138 0 chr6 6297436 6297501 -143219536 - B4 SINE B4 -217 75 2 4 633 954 139 36 14 chr6 6297997 6298136 -143218901 - B1_Mus1 SINE Alu -5 143 2 4 633 278 337 73 44 chr6 6298328 6298533 -143218504 - MLT1D LTR MaLR -268 237 27 4 633 1291 41 0 7 chr6 6298542 6298690 -143218347 - B1_Mm SINE Alu 0 147 1 4 633 337 278 0 9 chr6 6299333 6299449 -143217588 - L1MA6 LINE L1 -3 6297 6183 4 633 21 0 0 0 chr6 6299457 6299478 -143217559 + AT_rich Low_complexity Low_complexity 1 21 0 4 633 8046 58 3 9 chr6 6299481 6300607 -143216430 - L1_Mus1 LINE L1 -1 6566 5447 4 633 307 375 0 0 chr6 6301493 6301661 -143215376 + (CCA)n Simple_repeat Simple_repeat 1 168 0 4 633 3406 95 6 0 chr6 6302338 6302811 -143214226 - L1_Mus1 LINE L1 -424 5459 4984 4 633 237 272 56 37 chr6 6302845 6302952 -143214085 - L1MA6 LINE L1 -154 6146 6038 4 633 852 205 129 136 chr6 6302984 6303175 -143213862 + L1_Rod LINE L1 4824 4994 -886 4 633 1181 82 7 0 chr6 6303175 6303322 -143213715 + B1_Mus1 SINE Alu 1 148 0 4 633 852 218 122 141 chr6 6303322 6303716 -143213321 + L1_Rod LINE L1 4962 5387 -493 4 633 904 177 7 7 chr6 6303716 6303854 -143213183 + B1_Mur4 SINE Alu 2 140 -10 4 633 186 43 0 0 chr6 6303854 6303877 -143213160 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 633 624 249 73 124 chr6 6303886 6304071 -143212966 + L1_Rod LINE L1 5388 5590 -2195 4 633 366 241 13 0 chr6 6304962 6305041 -143211996 - MTC LTR MaLR -12 409 330 4 633 224 364 22 37 chr6 6305118 6305252 -143211785 + B1_Mur1 SINE Alu 10 141 -8 4 633 320 217 0 0 chr6 6306186 6306255 -143210782 - PB1 SINE Alu -29 98 30 4 633 277 341 12 0 chr6 6306427 6306509 -143210528 - MER5A DNA MER1_type -26 163 81 4 633 203 280 25 51 chr6 6306524 6306603 -143210434 + MER5B DNA MER1_type 35 111 -67 4 633 298 247 90 0 chr6 6306604 6306693 -143210344 - MLT1C LTR MaLR 0 467 371 4 633 927 168 7 0 chr6 6306715 6306864 -143210173 - B1_Mur4 SINE Alu 0 150 1 4 633 312 27 0 0 chr6 6307693 6307730 -143209307 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 633 182 264 101 72 chr6 6308309 6308448 -143208589 - L3 LINE CR1 -3084 1405 1263 4 633 756 122 3 52 chr6 6308505 6308822 -143208215 + (TG)n Simple_repeat Simple_repeat 1 301 0 5 633 1103 241 43 47 chr6 6308823 6309101 -143207936 - B4 SINE B4 0 292 16 5 633 250 263 26 26 chr6 6309499 6309577 -143207460 - ID4 SINE ID -1 82 5 5 633 365 321 167 0 chr6 6309605 6309851 -143207186 - L1MB3 LINE L1 -18 6165 5879 5 633 300 288 41 0 chr6 6309854 6309927 -143207110 - ID4_ SINE ID -6 77 2 5 633 572 124 85 0 chr6 6310010 6310139 -143206898 - Lx9 LINE L1 -8 7636 7497 5 633 427 261 165 11 chr6 6310165 6310347 -143206690 - L1MB3 LINE L1 -383 5800 5591 5 633 465 34 0 0 chr6 6310361 6310420 -143206617 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 633 547 284 6 69 chr6 6310425 6310599 -143206438 - RSINE1 SINE B4 0 165 3 5 633 6231 76 10 16 chr6 6310897 6311698 -143205339 - L1_Mus3 LINE L1 -4 6634 5839 5 633 279 0 0 0 chr6 6311978 6312009 -143205028 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 633 633 209 0 0 chr6 6313282 6313430 -143203607 + G-rich Low_complexity Low_complexity 4 151 0 5 633 254 257 46 65 chr6 6314042 6314150 -143202887 - IAPLTR3-int LTR ERVK -1996 4825 4720 5 633 225 0 0 0 chr6 6314259 6314284 -143202753 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 633 260 284 0 39 chr6 6315748 6315825 -143201212 + L1MEc LINE L1 27 100 -6300 5 633 278 298 94 25 chr6 6315837 6316040 -143200997 + L1MEc LINE L1 169 385 -6015 5 633 693 140 0 0 chr6 6316040 6316190 -143200847 + (GA)n Simple_repeat Simple_repeat 1 150 0 5 633 378 143 0 0 chr6 6316201 6316264 -143200773 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 633 1558 160 92 0 chr6 6316696 6316989 -143200048 + IAPEY3_LTR LTR ERVK 1 320 -12 5 633 321 47 0 0 chr6 6317314 6317357 -143199680 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 633 818 158 0 63 chr6 6317361 6317503 -143199534 - B1_Mus1 SINE Alu -15 133 1 5 633 275 327 204 19 chr6 6317927 6318133 -143198904 - MIRb SINE MIR -17 251 8 5 633 250 350 0 41 chr6 6318495 6318617 -143198420 - MIRb SINE MIR 0 268 152 5 633 540 352 60 20 chr6 6321562 6321811 -143195226 + MIR SINE MIR 4 262 0 5 633 5138 68 2 2 chr6 6323980 6324600 -143192437 + L1_Mus1 LINE L1 5945 6564 -3 5 633 189 0 0 0 chr6 6324605 6324626 -143192411 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 5 633 739 136 42 8 chr6 6325790 6325909 -143191128 + B3 SINE B2 1 123 -93 5 633 387 0 0 0 chr6 6325949 6325992 -143191045 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 5 633 323 354 13 0 chr6 6326407 6326486 -143190551 - MIRm SINE MIR -193 83 4 5 633 598 288 87 92 chr6 6327161 6327597 -143189440 + L1MB4 LINE L1 5696 6129 -51 5 633 308 266 110 0 chr6 6328056 6328165 -143188872 - MER5A1 DNA MER1_type -17 149 29 5 633 1050 217 98 25 chr6 6328503 6328777 -143188260 + Charlie13b DNA Charlie 54 347 -165 5 633 1311 265 67 29 chr6 6329404 6329433 -143187604 + L1MC1 LINE L1 5787 5815 -518 5 633 423 38 0 0 chr6 6329433 6329486 -143187551 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 5 633 1311 265 67 29 chr6 6329486 6329652 -143187385 + L1MC1 LINE L1 5816 5986 -347 5 633 2189 131 28 0 chr6 6329652 6329972 -143187065 + ORR1A4 LTR MaLR 1 329 0 5 633 1311 265 67 29 chr6 6329972 6330300 -143186737 + L1MC1 LINE L1 5987 6330 -3 5 633 506 108 12 0 chr6 6331233 6331316 -143185721 + (CA)n Simple_repeat Simple_repeat 1 84 0 5 633 258 283 69 96 chr6 6332260 6332592 -143184445 - L2a LINE L2 -8 3418 3096 5 633 414 0 0 0 chr6 6333224 6333270 -143183767 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 633 288 0 0 0 chr6 6333270 6333301 -143183736 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 633 312 319 56 35 chr6 6333318 6333461 -143183576 + MIRc SINE MIR 117 262 -6 5 633 243 185 105 118 chr6 6336788 6336941 -143180096 - Charlie5 DNA MER1_type -4 2620 2470 5 633 327 25 0 0 chr6 6336941 6336981 -143180056 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 633 211 324 15 0 chr6 6336983 6337051 -143179986 - ID4 SINE ID -9 74 6 5 633 231 284 88 69 chr6 6337202 6337218 -143179819 - Charlie5 DNA MER1_type -228 2396 2384 5 633 298 304 42 42 chr6 6337218 6337338 -143179699 - PB1D7 SINE Alu 0 120 1 5 633 231 284 88 69 chr6 6337338 6337480 -143179557 - Charlie5 DNA MER1_type -241 2383 2235 5 633 416 292 58 7 chr6 6337486 6337624 -143179413 - MER3 DNA MER1_type -38 171 27 5 633 267 356 11 0 chr6 6337720 6337810 -143179227 + MER5A DNA MER1_type 22 112 -77 5 633 436 265 52 107 chr6 6338054 6338362 -143178675 + RMER10A LTR ERVL 113 403 -39 5 633 184 294 19 19 chr6 6338481 6338533 -143178504 + MER5B DNA MER1_type 103 154 -24 5 633 189 175 0 0 chr6 6339769 6339809 -143177228 + A-rich Low_complexity Low_complexity 1 40 0 5 633 374 238 28 70 chr6 6340517 6340649 -143176388 + PB1D7 SINE Alu 21 149 0 5 633 565 297 52 0 chr6 6341529 6341684 -143175353 - B4A SINE B4 -2 290 128 5 633 297 0 0 0 chr6 6341713 6341746 -143175291 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 633 624 270 86 86 chr6 6341749 6342004 -143175033 - B4A SINE B4 -36 256 2 5 633 236 333 49 0 chr6 6342013 6342094 -143174943 - B4A SINE B4 -203 89 5 5 633 1826 293 99 23 chr6 6343341 6343583 -143173454 + L1M2 LINE L1 3600 3843 -2300 5 633 333 82 0 0 chr6 6343583 6343632 -143173405 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 633 1826 293 99 23 chr6 6343632 6344567 -143172470 + L1M2 LINE L1 3844 4867 -1276 5 633 2494 178 91 23 chr6 6344570 6344757 -143172280 + L1_Mur3 LINE L1 3873 4074 -1806 5 633 447 19 0 0 chr6 6344757 6344809 -143172228 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 633 2494 178 91 23 chr6 6344809 6345225 -143171812 + L1_Mur3 LINE L1 4075 4516 -1364 5 633 21 0 0 0 chr6 6345235 6345256 -143171781 + AT_rich Low_complexity Low_complexity 1 21 0 5 633 4892 196 65 129 chr6 6345265 6345506 -143171531 + L1_Mur3 LINE L1 2221 2460 -3420 5 633 183 42 0 0 chr6 6345506 6345530 -143171507 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 633 4892 196 65 129 chr6 6345530 6345979 -143171058 + L1_Mur3 LINE L1 2461 2891 -2989 5 633 745 230 13 7 chr6 6345979 6346128 -143170909 + B1_Mur4 SINE Alu 1 150 0 5 633 4892 196 65 129 chr6 6346128 6346244 -143170793 + L1_Mur3 LINE L1 2892 3004 -2876 5 633 875 78 8 0 chr6 6346244 6346373 -143170664 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 5 633 4892 196 65 129 chr6 6346373 6347408 -143169629 + L1_Mur3 LINE L1 3005 4084 -1796 5 633 1601 210 92 51 chr6 6347412 6347783 -143169254 - ORR1B1 LTR MaLR -8 386 1 5 633 773 153 13 0 chr6 6347833 6347983 -143169054 + L1_Mur3 LINE L1 4249 4400 -1480 5 633 23 0 0 0 chr6 6349080 6349103 -143167934 + AT_rich Low_complexity Low_complexity 1 23 0 5 633 619 271 5 67 chr6 6349171 6349365 -143167672 + B3A SINE B2 17 198 0 5 633 11549 55 7 0 chr6 6349601 6351852 -143165185 - L1Md_F2 LINE L1 0 6582 4312 5 633 2484 95 81 0 chr6 6351885 6352254 -143164783 - Lx3_Mus LINE L1 0 7009 6611 5 633 3961 260 96 27 chr6 6352350 6353701 -143163336 + Charlie1a DNA MER1_type 12 1454 -1 5 633 482 295 63 21 chr6 6354137 6354469 -143162568 - L1MCb LINE L1 -3644 2920 2575 5 633 1819 101 0 0 chr6 6354691 6354948 -143162089 - L1_Mus3 LINE L1 -87 5796 5540 5 633 5991 86 22 1 chr6 6354949 6355774 -143161263 + L1_Mus3 LINE L1 5793 6634 -4 5 633 405 223 92 103 chr6 6355785 6355807 -143161230 - B2_Mm1a SINE B2 -10 183 154 5 633 218 81 27 0 chr6 6355807 6355844 -143161193 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 633 736 223 92 103 chr6 6355844 6356006 -143161031 - B3A SINE B2 -41 157 1 5 633 829 288 144 7 chr6 6356167 6356474 -143160563 + ORR1D2 LTR MaLR 3 359 -20 5 633 601 375 88 41 chr6 6356568 6357001 -143160036 - L1MCb LINE L1 -5167 878 428 5 633 2013 124 48 6 chr6 6357001 6357317 -143159720 - ORR1A4 LTR MaLR 0 329 1 5 633 601 375 88 41 chr6 6357317 6357420 -143159617 - L1MCb LINE L1 -5618 427 317 5 633 732 309 99 27 chr6 6357462 6357795 -143159242 + MLT1F2 LTR MaLR 204 560 0 5 633 692 284 101 18 chr6 6358335 6358554 -143158483 + B4 SINE B4 5 241 -51 5 633 3478 57 2 5 chr6 6358554 6359021 -143158016 + L1Md_F2 LINE L1 6139 6582 0 5 633 396 0 0 0 chr6 6359041 6359085 -143157952 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 633 2029 80 48 7 chr6 6359260 6359550 -143157487 - ORR1A2 LTR MaLR 0 327 26 5 633 480 35 0 0 chr6 6359770 6359828 -143157209 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 633 21 0 0 0 chr6 6360254 6360275 -143156762 + AT_rich Low_complexity Low_complexity 1 21 0 5 633 186 43 0 0 chr6 6360836 6360859 -143156178 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 5 633 804 232 88 29 chr6 6361184 6361388 -143155649 + B3 SINE B2 1 216 0 5 633 25 0 0 0 chr6 6361891 6361916 -143155121 + AT_rich Low_complexity Low_complexity 1 25 0 5 633 3952 139 29 20 chr6 6361916 6362578 -143154459 - Lx4A LINE L1 -9 7049 6382 5 633 4422 183 81 15 chr6 6362615 6363525 -143153512 - Lx5 LINE L1 -75 6975 6002 5 633 410 0 20 0 chr6 6363525 6363575 -143153462 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 5 633 4422 183 81 15 chr6 6363575 6363622 -143153415 - Lx5 LINE L1 -1049 6001 5955 5 633 276 224 0 49 chr6 6364522 6364583 -143152454 - Charlie12 DNA MER1_type -4 2869 2812 5 633 283 316 16 73 chr6 6365728 6365851 -143151186 + MER5A1 DNA MER1_type 50 165 -1 5 633 1350 37 0 0 chr6 6366359 6366523 -143150514 + (TTC)n Simple_repeat Simple_repeat 2 165 0 5 633 6791 88 7 16 chr6 6366532 6367818 -143149219 - L1_Mus2 LINE L1 -6 6560 5286 5 633 10185 46 7 4 chr6 6367825 6369627 -143147410 - L1Md_F2 LINE L1 -14 6568 4754 5 633 4272 17 0 2 chr6 6369627 6370110 -143146927 + LTRIS_Mm LTR ERV1 1 482 0 5 633 10185 44 0 7 chr6 6370110 6370302 -143146735 - L1Md_F2 LINE L1 -1130 4753 4564 5 633 24571 115 12 11 chr6 6370306 6374602 -143142435 - L1_Mus2 LINE L1 -585 5298 1038 5 633 2187 113 47 121 chr6 6374602 6375115 -143141922 - IAPLTR2_Mm LTR ERVK 0 475 1 5 633 2791 172 49 27 chr6 6375115 6375574 -143141463 - L1_Mus2 LINE L1 -5579 1037 559 5 633 477 269 120 81 chr6 6376512 6376771 -143140266 - B4 SINE B4 0 292 24 5 633 2046 135 109 6 chr6 6376888 6377245 -143139792 - ORR1B1 LTR MaLR 0 394 1 5 633 2803 22 0 3 chr6 6377607 6377930 -143139107 + RLTRETN_Mm LTR ERVK 1 322 0 5 633 318 278 45 85 chr6 6379185 6379347 -143137690 + L1MEe LINE L1 659 816 -4038 5 633 1036 116 121 0 chr6 6379347 6379520 -143137517 + B2_Mm2 SINE B2 1 194 -1 5 633 318 278 45 85 chr6 6379520 6379534 -143137503 + L1MEe LINE L1 817 828 -4026 5 633 347 290 116 13 chr6 6379536 6379760 -143137277 + L1MA7 LINE L1 1970 2170 -4680 5 633 748 220 69 0 chr6 6379760 6379919 -143137118 - MTE2a LTR MaLR 0 379 210 5 633 1501 159 207 10 chr6 6380181 6380485 -143136552 + ORR1B2 LTR MaLR 4 367 0 5 633 343 304 85 34 chr6 6380908 6381085 -143135952 + L1MA7 LINE L1 5068 5253 -1592 5 633 517 303 0 36 chr6 6381167 6381304 -143135733 - ID_B1 SINE B4 -2 222 91 6 633 516 332 41 7 chr6 6381313 6381607 -143135430 + L1MA7 LINE L1 5303 5606 -1239 5 633 354 278 78 61 chr6 6381618 6381733 -143135304 + PB1D10 SINE Alu 1 117 0 6 633 373 320 47 13 chr6 6381740 6381889 -143135148 + L1MA7 LINE L1 5806 5959 -886 5 633 1077 116 0 0 chr6 6381892 6382038 -143134999 + B1_Mus2 SINE Alu 2 147 0 6 633 462 79 0 0 chr6 6382041 6382104 -143134933 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 6 633 1423 280 131 13 chr6 6382138 6382362 -143134675 + L1MA7 LINE L1 6110 6346 -647 5 633 426 69 0 0 chr6 6382362 6382420 -143134617 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 633 1423 280 131 13 chr6 6382420 6382983 -143134054 + L1MA7 LINE L1 6347 6989 -4 5 633 782 270 23 36 chr6 6383400 6383619 -143133418 - MTD LTR MaLR -201 218 3 6 633 821 119 0 0 chr6 6383705 6383823 -143133214 + B1_Mus2 SINE Alu 23 140 -7 6 633 225 348 110 7 chr6 6383896 6384032 -143133005 - LTR16B1 LTR ERVL -16 464 315 6 633 427 322 164 33 chr6 6384133 6384266 -143132771 + MLT1C LTR MaLR 52 179 -288 6 633 213 94 0 0 chr6 6384266 6384298 -143132739 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 633 427 322 164 33 chr6 6384298 6384524 -143132513 + MLT1C LTR MaLR 180 457 -10 6 633 210 37 0 0 chr6 6385250 6385277 -143131760 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 6 633 641 306 19 76 chr6 6386112 6386374 -143130663 + MTE2a LTR MaLR 100 346 -33 6 633 810 287 66 72 chr6 6386771 6387120 -143129917 + ORR1E LTR MaLR 1 347 -12 6 633 267 31 0 0 chr6 6387423 6387455 -143129582 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 6 633 2206 166 83 11 chr6 6387462 6387577 -143129460 - RMER1B Other Other -6 1060 949 6 633 279 0 0 0 chr6 6387577 6387608 -143129429 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 633 2206 166 83 11 chr6 6387608 6387938 -143129099 - RMER1B Other Other -118 948 584 6 633 332 224 0 0 chr6 6387970 6388037 -143129000 - RMER1B Other Other -712 354 288 6 633 417 116 0 0 chr6 6388097 6388166 -143128871 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 6 633 237 356 99 47 chr6 6388166 6388399 -143128638 - L2 LINE L2 -2411 1008 764 6 633 372 103 0 0 chr6 6388586 6388644 -143128393 + (T)n Simple_repeat Simple_repeat 1 58 0 6 633 1164 76 0 0 chr6 6388645 6388790 -143128247 - B1_Mus1 SINE Alu -2 146 2 6 633 3051 137 96 105 chr6 6389006 6389701 -143127336 + RMER6C LTR ERVK 1 689 -1 6 633 9837 69 1 0 chr6 6389701 6391060 -143125977 - L1Md_F2 LINE L1 -1154 4729 3369 6 633 6410 60 0 0 chr6 6391054 6391895 -143125142 + L1Md_F2 LINE L1 4746 5586 -297 6 633 8310 38 0 1 chr6 6391896 6392880 -143124157 + L1Md_F2 LINE L1 5588 6570 -12 6 633 2638 160 33 4 chr6 6393283 6393734 -143123303 + Lx4B LINE L1 6595 7058 0 6 633 183 100 0 0 chr6 6394079 6394109 -143122928 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 6 633 273 359 82 7 chr6 6394642 6394788 -143122249 + MLT1J LTR MaLR 66 222 -290 6 633 557 304 7 0 chr6 6394805 6394852 -143122185 + ID_B1 SINE B4 34 169 -55 6 633 356 313 0 65 chr6 6394852 6394940 -143122097 + PB1D10 SINE Alu 1 88 -29 6 633 216 0 0 0 chr6 6394940 6394964 -143122073 + (CAGC)n Simple_repeat Simple_repeat 1 24 0 6 633 356 313 0 65 chr6 6394964 6394998 -143122039 + PB1D10 SINE Alu 89 115 -2 6 633 326 23 0 23 chr6 6396020 6396064 -143120973 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 633 426 39 0 0 chr6 6396159 6396211 -143120826 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 633 985 259 46 27 chr6 6396212 6396474 -143120563 - B4A SINE B4 -23 269 3 6 633 274 225 112 40 chr6 6396493 6396618 -143120419 - L1M5 LINE L1 -3680 2535 2402 6 633 450 0 0 0 chr6 6396748 6396798 -143120239 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 633 493 185 3 11 chr6 6397095 6397205 -143119832 - L1_Rod LINE L1 -2017 4129 3988 6 633 1462 232 21 29 chr6 6397203 6397732 -143119305 + Lx9 LINE L1 5484 6044 -1600 6 633 26 30 0 0 chr6 6397873 6397906 -143119131 + AT_rich Low_complexity Low_complexity 1 33 0 6 633 186 43 0 0 chr6 6397989 6398012 -143119025 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 6 633 242 279 0 0 chr6 6398051 6398184 -143118853 + A-rich Low_complexity Low_complexity 1 133 0 6 633 240 143 0 0 chr6 6398406 6398448 -143118589 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 6 633 1002 82 15 0 chr6 6398491 6398626 -143118411 + B1_Mus1 SINE Alu 11 147 -1 6 633 352 243 38 19 chr6 6398657 6398762 -143118275 + RMER12 LTR ERVK 764 870 -452 6 633 3433 220 50 24 chr6 6398770 6399591 -143117446 - Lx6 LINE L1 -211 7249 6408 6 633 2385 151 28 107 chr6 6399589 6399805 -143117232 + Lx6 LINE L1 5354 5548 -332 6 633 1110 61 0 45 chr6 6399805 6399959 -143117078 + B1_Mm SINE Alu 1 147 0 6 633 2722 210 46 58 chr6 6399959 6400823 -143116214 + Lx6 LINE L1 5549 6405 -1055 6 633 2395 272 112 54 chr6 6400802 6402049 -143114988 + Lx9 LINE L1 6316 7634 -10 6 633 3416 35 2 0 chr6 6402275 6402670 -143114367 - MTA_Mm LTR MaLR 0 396 1 6 633 270 0 0 0 chr6 6404349 6404379 -143112658 + (A)n Simple_repeat Simple_repeat 1 30 0 6 633 181 268 220 30 chr6 6405147 6405247 -143111790 - MIR SINE MIR -109 153 35 6 633 733 225 33 17 chr6 6407143 6407324 -143109713 - MER53 DNA hAT -1 192 9 6 633 734 71 0 0 chr6 6408191 6408290 -143108747 - B1_Mm SINE Alu -11 136 38 6 633 180 0 0 0 chr6 6408557 6408577 -143108460 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 633 816 11 0 0 chr6 6409296 6409389 -143107648 + (TC)n Simple_repeat Simple_repeat 2 94 0 6 633 181 258 78 31 chr6 6410173 6410237 -143106800 + MER5A DNA MER1_type 78 144 -45 6 633 30 77 0 0 chr6 6410795 6410860 -143106177 + AT_rich Low_complexity Low_complexity 1 65 0 6 633 333 0 0 0 chr6 6411167 6411204 -143105833 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 633 228 100 0 0 chr6 6411218 6411258 -143105779 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 633 354 45 0 0 chr6 6411527 6411571 -143105466 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 6 633 219 283 293 0 chr6 6411861 6411960 -143105077 + RSINE1 SINE B4 2 129 -36 6 633 232 333 103 43 chr6 6411955 6412071 -143104966 - RSINE1 SINE B4 -24 141 19 6 633 361 251 99 87 chr6 6412080 6412333 -143104704 + Arthur1 DNA Tip100 2895 3150 -797 6 633 701 243 125 51 chr6 6412367 6412679 -143104358 + Arthur1 DNA Tip100 3345 3679 -268 6 633 315 0 0 0 chr6 6412756 6412791 -143104246 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 633 306 0 0 0 chr6 6412791 6412824 -143104213 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 633 256 381 19 32 chr6 6412826 6412983 -143104054 - RSINE1 SINE B4 -8 157 3 6 633 581 169 29 0 chr6 6413107 6413243 -143103794 + CT-rich Low_complexity Low_complexity 1 140 0 6 633 1082 116 12 0 chr6 6413269 6413442 -143103595 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 6 633 363 192 0 0 chr6 6415259 6415337 -143101700 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 633 392 210 20 0 chr6 6416814 6416914 -143100123 + GA-rich Low_complexity Low_complexity 4 105 0 6 633 325 86 35 0 chr6 6417141 6417199 -143099838 + (GAAAA)n Simple_repeat Simple_repeat 2 61 0 6 633 837 149 0 0 chr6 6417490 6417665 -143099372 + (GA)n Simple_repeat Simple_repeat 1 175 0 6 633 239 326 52 21 chr6 6418437 6418534 -143098503 - L2a LINE L2 -36 3390 3291 6 633 204 125 0 0 chr6 6419437 6419469 -143097568 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 6 633 190 333 116 0 chr6 6420391 6420460 -143096577 + MIR SINE MIR 29 105 -157 6 633 265 24 48 0 chr6 6421285 6421327 -143095710 + (TCTCTG)n Simple_repeat Simple_repeat 5 48 0 6 633 378 0 0 0 chr6 6421327 6421368 -143095669 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 633 23 33 0 0 chr6 6421373 6421403 -143095634 + AT_rich Low_complexity Low_complexity 1 30 0 6 633 2861 246 113 91 chr6 6421416 6422522 -143094515 - Lx5 LINE L1 -18 7032 5903 6 79 5337 154 126 5 chr6 6422518 6423649 -143093388 - L1_Mur2 LINE L1 -210 5667 4401 6 634 653 188 65 0 chr6 6423651 6423789 -143093248 + Lx7 LINE L1 1820 1966 -3914 6 634 812 307 38 93 chr6 6423805 6424252 -143092785 - Lx9 LINE L1 -212 7432 7019 6 634 486 0 0 0 chr6 6424252 6424306 -143092731 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 634 812 307 38 93 chr6 6424306 6424437 -143092600 - Lx9 LINE L1 -626 7018 6886 6 634 1320 292 87 51 chr6 6424451 6425661 -143091376 - Lx9 LINE L1 -887 6757 5437 6 634 405 264 54 18 chr6 6425661 6425773 -143091264 - B1F SINE Alu -13 136 21 6 634 1164 278 33 52 chr6 6426043 6426407 -143090630 + MTEa LTR MaLR 3 359 -20 6 634 342 0 0 0 chr6 6426531 6426569 -143090468 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 634 368 272 40 26 chr6 6426795 6426946 -143090091 - CR1_Mam LINE CR1 -456 1748 1596 6 634 204 167 0 67 chr6 6427115 6427160 -143089877 + polypyrimidine Low_complexity Low_complexity 1 42 0 6 634 409 326 14 7 chr6 6427162 6427301 -143089736 - L2a LINE L2 -10 3416 3277 6 634 2670 82 3 0 chr6 6427980 6428360 -143088677 - L1Md_F2 LINE L1 -667 5216 4836 6 634 2947 53 0 0 chr6 6428357 6428736 -143088301 + L1Md_F2 LINE L1 5207 5585 -298 6 634 7579 74 0 2 chr6 6428737 6429716 -143087321 + L1Md_F2 LINE L1 5587 6563 -19 6 634 202 0 91 0 chr6 6429721 6429754 -143087283 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 6 634 180 0 0 0 chr6 6429805 6429825 -143087212 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 634 4901 243 58 36 chr6 6429921 6431538 -143085499 + Lx7 LINE L1 3803 5439 -441 6 634 903 136 0 0 chr6 6431547 6431694 -143085343 + (GGGAA)n Simple_repeat Simple_repeat 5 151 0 6 634 906 79 0 16 chr6 6431694 6431813 -143085224 - RLTR9B LTR ERVK -318 119 1 6 634 2674 278 70 84 chr6 6431813 6432504 -143084533 + Lx7 LINE L1 5412 6178 -1295 6 634 196 111 44 0 chr6 6432507 6432552 -143084485 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 6 634 267 168 178 61 chr6 6433029 6433143 -143083894 + MLT1A1 LTR MaLR 298 501 -4 6 634 225 214 127 14 chr6 6434492 6434563 -143082474 - Zaphod2 DNA Tip100 -541 2983 2905 6 634 7097 81 14 39 chr6 6434714 6435860 -143081177 - L1_Mus4 LINE L1 -1 6635 5519 6 634 936 329 34 46 chr6 6435943 6436293 -143080744 + MLT2B1 LTR ERVL 3 348 -172 6 634 234 237 52 13 chr6 6436798 6436875 -143080162 + L1MC4 LINE L1 7765 7844 -198 6 634 659 313 135 84 chr6 6436883 6437357 -143079680 - MLT1D LTR MaLR -1 504 7 6 634 233 250 101 38 chr6 6437752 6437831 -143079206 + RLTR33 LTR ERVK 79 162 -516 6 634 327 130 0 0 chr6 6437870 6437924 -143079113 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 634 860 213 13 13 chr6 6439133 6439443 -143077594 + GA-rich Low_complexity Low_complexity 1 310 0 6 634 697 169 105 0 chr6 6439730 6439854 -143077183 + B1_Mur4 SINE Alu 1 137 -13 7 634 29971 13 2 4 chr6 6440010 6445553 -143071484 + L1Md_A LINE L1 213 5728 -155 7 634 4795 19 2 0 chr6 6445553 6446068 -143070969 + L1Md_A LINE L1 6067 6582 0 7 634 702 179 0 0 chr6 6447303 6447437 -143069600 + GA-rich Low_complexity Low_complexity 4 137 0 7 634 8235 128 20 122 chr6 6447747 6449439 -143067598 - L1_Mur2 LINE L1 -348 5529 4010 7 634 7963 54 4 6 chr6 6449802 6451231 -143065806 - L1Md_F2 LINE L1 0 6582 5159 7 634 33257 53 67 0 chr6 6451219 6456558 -143060479 - L1Md_F2 LINE L1 0 6585 792 7 634 250 186 0 0 chr6 6456556 6456599 -143060438 - L1Md_F2 LINE L1 -5987 632 590 7 634 461 234 0 0 chr6 6456597 6456691 -143060346 - L1Md_F2 LINE L1 -6191 428 335 7 634 255 224 13 13 chr6 6456696 6456773 -143060264 - L1VL1 LINE L1 -6329 93 17 7 634 353 322 38 50 chr6 6458308 6458383 -143058654 + MIR SINE MIR 30 107 -155 7 634 1423 252 67 17 chr6 6458383 6458742 -143058295 + MTE2b LTR MaLR 1 377 -2 7 634 353 322 38 50 chr6 6458742 6458826 -143058211 + MIR SINE MIR 108 187 -75 7 634 1470 272 72 28 chr6 6458909 6459578 -143057459 + L1MC1 LINE L1 5299 5996 -337 7 634 359 313 37 0 chr6 6459675 6459809 -143057228 + L1MC1 LINE L1 6158 6296 -37 7 634 260 291 46 11 chr6 6459885 6459972 -143057065 - Lx9 LINE L1 -192 7452 7363 7 634 1658 146 87 84 chr6 6460201 6460546 -143056491 - ORR1B1 LTR MaLR -8 386 41 7 634 2502 263 85 77 chr6 6460849 6461948 -143055089 + RMER1C Other Other 382 1342 0 7 634 726 222 20 14 chr6 6462058 6462204 -143054833 - B1_Mur2 SINE Alu -2 147 1 7 634 1388 191 95 4 chr6 6462432 6462705 -143054332 - MTC LTR MaLR 0 421 124 7 634 249 205 71 12 chr6 6464348 6464432 -143052605 - L1M6 LINE L1 -6337 159 71 7 634 329 362 89 66 chr6 6464521 6464734 -143052303 + MER70B LTR ERVL 104 321 -257 7 634 386 271 333 44 chr6 6467374 6467602 -143049435 - MTEa LTR MaLR -82 297 4 7 634 2899 279 154 15 chr6 6467607 6468366 -143048671 - MTEa-int LTR MaLR -2 1578 733 7 634 324 70 0 0 chr6 6468366 6468409 -143048628 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 634 2899 288 82 14 chr6 6468409 6468604 -143048433 - MTEa-int LTR MaLR -848 732 505 7 634 1376 287 41 41 chr6 6469073 6469484 -143047553 - MTEa-int LTR MaLR -1116 464 54 7 634 885 261 45 5 chr6 6469485 6469685 -143047352 + B3 SINE B2 1 208 -8 7 634 7487 28 0 2 chr6 6469757 6470576 -143046461 - L1Md_F2 LINE L1 -14 6568 5752 7 634 23 86 0 0 chr6 6470667 6470725 -143046312 + AT_rich Low_complexity Low_complexity 1 58 0 7 634 32911 112 20 12 chr6 6470791 6474733 -143042304 + L1_Mus1 LINE L1 215 4184 -1699 7 634 213 39 0 0 chr6 6474733 6474759 -143042278 + (ATATG)n Simple_repeat Simple_repeat 3 28 0 7 634 32911 89 14 2 chr6 6474759 6477109 -143039928 + L1_Mus1 LINE L1 4185 6567 0 7 634 442 111 0 24 chr6 6477146 6477229 -143039808 + L1Md_F2 LINE L1 6502 6582 0 7 634 272 27 0 26 chr6 6477271 6477309 -143039728 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 7 634 780 289 176 17 chr6 6477362 6477658 -143039379 - MTE2b LTR MaLR -21 358 16 7 634 234 0 0 0 chr6 6478025 6478051 -143038986 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 634 375 234 61 74 chr6 6478112 6478260 -143038777 - CYRA11_Mm Unknown Y-chromosome -300 317 172 7 634 829 116 0 37 chr6 6478127 6478261 -143038776 + URR1B DNA MER1_type 97 225 0 7 634 449 311 48 99 chr6 6480605 6480980 -143036057 + ORR1E LTR MaLR 2 357 -2 7 634 358 273 8 47 chr6 6482081 6482096 -143034941 - L1Md_F LINE L1 -5713 847 833 7 634 5749 62 85 10 chr6 6482096 6482817 -143034220 - L1_Mus1 LINE L1 0 6567 5793 7 634 3099 174 59 53 chr6 6482817 6483529 -143033508 - L1Md_F LINE L1 -5728 832 115 7 634 207 108 27 0 chr6 6484101 6484138 -143032899 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 7 634 27 0 0 0 chr6 6484232 6484259 -143032778 + AT_rich Low_complexity Low_complexity 1 27 0 7 634 803 281 17 0 chr6 6484295 6484473 -143032564 - B3A SINE B2 -17 181 1 7 634 1196 52 0 0 chr6 6485356 6485492 -143031545 + B1_Mus2 SINE Alu 1 136 -11 7 634 228 35 0 0 chr6 6485495 6485524 -143031513 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 634 204 40 0 0 chr6 6486073 6486098 -143030939 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 634 337 198 18 26 chr6 6486124 6486238 -143030799 + (TA)n Simple_repeat Simple_repeat 2 114 0 7 634 200 0 100 0 chr6 6486333 6486373 -143030664 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 7 634 1330 21 7 0 chr6 6486373 6486518 -143030519 - B1_Mus1 SINE Alu -1 147 2 7 634 211 314 116 0 chr6 6487502 6487520 -143029517 - B4A SINE B4 -181 111 16 7 634 471 132 0 0 chr6 6487520 6487585 -143029452 - BC1_Mm scRNA scRNA -69 83 19 7 634 378 217 146 77 chr6 6487585 6487715 -143029322 + B1F1 SINE Alu 1 139 -10 7 634 1625 68 0 0 chr6 6487873 6488065 -143028972 + B2_Mm1t SINE B2 1 192 -1 7 634 25 0 0 0 chr6 6488398 6488423 -143028614 + AT_rich Low_complexity Low_complexity 1 25 0 7 634 311 302 115 89 chr6 6488684 6489022 -143028015 + L1MEe LINE L1 1326 1672 -4494 7 634 242 29 29 0 chr6 6489069 6489104 -143027933 + (TAA)n Simple_repeat Simple_repeat 2 37 0 7 634 564 106 0 0 chr6 6489117 6489202 -143027835 + (TG)n Simple_repeat Simple_repeat 2 86 0 7 634 445 271 59 8 chr6 6489219 6489338 -143027699 - B3A SINE B2 -59 139 15 7 634 441 36 0 0 chr6 6489651 6489706 -143027331 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 634 351 0 0 0 chr6 6489706 6489744 -143027293 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 634 1280 54 0 13 chr6 6489768 6489918 -143027119 + B1_Mus1 SINE Alu 1 148 0 7 634 213 281 143 86 chr6 6489984 6490124 -143026913 + B2_Mm2 SINE B2 48 195 0 7 634 237 128 0 0 chr6 6490149 6490196 -143026841 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 634 885 283 48 26 chr6 6490323 6490595 -143026442 + B4A SINE B4 11 288 -4 7 634 277 329 162 16 chr6 6490659 6490912 -143026125 + L1MEe LINE L1 2268 2557 -3589 7 634 253 309 51 26 chr6 6491224 6491380 -143025657 + L1MEe LINE L1 2599 2758 -3388 7 634 522 252 42 8 chr6 6491906 6492026 -143025011 - MTE2b LTR MaLR -237 142 19 7 634 870 181 7 0 chr6 6492142 6492286 -143024751 - B1_Mus2 SINE Alu -1 146 2 7 634 268 229 71 63 chr6 6492286 6492403 -143024634 - RMER1C Other Other -166 1176 1059 7 634 1005 269 175 32 chr6 6492290 6492522 -143024515 - Lx8 LINE L1 -185 7288 7036 7 634 540 30 0 0 chr6 6492522 6492588 -143024449 + (TC)n Simple_repeat Simple_repeat 2 67 0 7 634 270 0 0 0 chr6 6492588 6492617 -143024420 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 634 1005 269 175 32 chr6 6492617 6492852 -143024185 - Lx8 LINE L1 -438 7035 6754 7 634 279 280 135 34 chr6 6494067 6494215 -143022822 + MIRc SINE MIR 18 180 -88 7 634 495 0 0 0 chr6 6494633 6494688 -143022349 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 634 1724 40 0 0 chr6 6495459 6495657 -143021380 + L1Md_T LINE L1 6385 6582 0 7 634 832 263 164 28 chr6 6495756 6496147 -143020890 + MLT1C LTR MaLR 24 467 0 7 634 329 299 61 0 chr6 6496271 6496418 -143020619 - MER58B DNA MER1_type -69 272 117 7 634 212 315 0 0 chr6 6496437 6496491 -143020546 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 634 383 338 109 17 chr6 6498903 6499077 -143017960 + MIR SINE MIR 1 206 -62 7 634 243 306 112 69 chr6 6499757 6499873 -143017164 + MER91A DNA Tip100 66 186 -10 7 634 21 0 0 0 chr6 6500526 6500547 -143016490 + AT_rich Low_complexity Low_complexity 1 21 0 1 634 313 269 86 32 chr6 6501712 6501859 -143015178 + MIR3 SINE MIR 31 185 -23 2 634 256 371 169 28 chr6 6503409 6503664 -143013373 + LTR16C LTR ERVL 1 291 -198 3 634 4097 73 11 9 chr6 6504519 6505069 -143011968 + L1Md_F2 LINE L1 6031 6581 -1 4 634 271 281 158 79 chr6 6505184 6505323 -143011714 - RSINE1 SINE B4 -13 152 3 5 634 254 325 75 43 chr6 6505752 6505913 -143011124 - L2 LINE L2 -906 2513 2348 6 634 244 222 0 0 chr6 6505917 6505971 -143011066 + (CATA)n Simple_repeat Simple_repeat 3 56 0 7 634 1000 200 37 5 chr6 6506150 6506366 -143010671 - URR1B DNA MER1_type -2 223 1 8 634 263 340 117 24 chr6 6506461 6506666 -143010371 + RMER15-int LTR ERVL 36 259 -4740 9 634 187 163 22 65 chr6 6507406 6507452 -143009585 + L2 LINE L2 2105 2148 -1271 1 634 21 0 0 0 chr6 6508171 6508192 -143008845 + AT_rich Low_complexity Low_complexity 1 21 0 1 634 21 71 0 0 chr6 6508299 6508341 -143008696 + AT_rich Low_complexity Low_complexity 1 42 0 1 634 24 0 0 0 chr6 6508647 6508671 -143008366 + AT_rich Low_complexity Low_complexity 1 24 0 1 634 679 317 35 0 chr6 6508833 6509035 -143008002 - B3 SINE B2 -7 209 1 1 634 338 281 137 11 chr6 6509205 6509468 -143007569 + L1MB5 LINE L1 4914 5209 -937 1 634 965 259 85 13 chr6 6509639 6510026 -143007011 + L1MB5 LINE L1 5533 5947 -227 1 634 416 297 130 11 chr6 6510759 6511028 -143006009 + Lx8 LINE L1 7141 7441 -32 1 634 289 369 16 8 chr6 6511124 6511247 -143005790 - ID_B1 SINE B4 -6 218 95 1 634 238 287 126 11 chr6 6511543 6511638 -143005399 + B4A SINE B4 182 287 -5 1 634 3227 214 115 26 chr6 6512152 6513178 -143003859 + Lx9 LINE L1 6522 7638 -6 1 634 394 262 39 0 chr6 6513466 6513569 -143003468 + PB1D10 SINE Alu 4 110 -7 2 634 546 251 148 39 chr6 6513800 6514057 -143002980 - B4A SINE B4 -3 289 5 2 634 232 237 85 0 chr6 6514179 6514238 -143002799 + L1MC4a LINE L1 6769 6832 -1050 2 634 802 240 6 22 chr6 6514759 6514938 -143002099 - MTD LTR MaLR -243 176 1 2 634 978 176 123 13 chr6 6515246 6515507 -143001530 + Lx7 LINE L1 7370 7622 -74 2 634 276 30 0 0 chr6 6515537 6515570 -143001467 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 634 275 284 139 25 chr6 6515626 6515761 -143001276 + MTEa LTR MaLR 3 141 -229 2 634 444 247 40 74 chr6 6515773 6515948 -143001089 + MTEa LTR MaLR 204 372 -7 2 634 195 42 0 0 chr6 6515968 6515992 -143001045 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 2 634 445 264 107 15 chr6 6516440 6516571 -143000466 + B3 SINE B2 7 149 -67 2 634 27 0 0 0 chr6 6517521 6517548 -142999489 + AT_rich Low_complexity Low_complexity 1 27 0 2 634 225 0 0 0 chr6 6517770 6517795 -142999242 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 634 506 269 43 0 chr6 6518150 6518291 -142998746 - RSINE1 SINE B4 -11 154 8 3 634 210 37 0 0 chr6 6518507 6518534 -142998503 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 634 527 262 13 63 chr6 6518534 6518693 -142998344 - RSINE1 SINE B4 -5 160 10 3 634 23 0 0 0 chr6 6519558 6519581 -142997456 + AT_rich Low_complexity Low_complexity 1 23 0 3 634 819 236 45 10 chr6 6520995 6521196 -142995841 - B3 SINE B2 -6 210 3 3 634 404 211 135 18 chr6 6522349 6522493 -142994544 + MLT1B LTR MaLR 221 390 0 3 634 212 298 46 35 chr6 6522627 6522714 -142994323 + RSINE1 SINE B4 2 89 -76 3 634 240 111 0 0 chr6 6522878 6522923 -142994114 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 634 240 163 0 0 chr6 6522922 6522965 -142994072 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 634 669 25 0 0 chr6 6523295 6523374 -142993663 + (GA)n Simple_repeat Simple_repeat 1 79 0 4 634 180 0 0 0 chr6 6523696 6523716 -142993321 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 634 761 194 217 0 chr6 6523718 6523893 -142993144 - B3 SINE B2 -2 214 2 4 634 858 148 28 14 chr6 6524213 6524357 -142992680 - B1_Mus1 SINE Alu -1 147 2 4 634 1887 139 64 14 chr6 6524428 6524772 -142992265 + ORR1B2 LTR MaLR 2 362 -5 4 634 237 269 11 124 chr6 6526232 6526321 -142990716 - MER5A1 DNA MER1_type -85 81 3 4 634 248 389 35 66 chr6 6527662 6527918 -142989119 + MIRb SINE MIR 15 268 0 4 634 21 36 0 0 chr6 6528356 6528384 -142988653 + GC_rich Low_complexity Low_complexity 1 28 0 4 634 975 234 65 120 chr6 6529763 6530162 -142986875 - MTE2a LTR MaLR -2 377 1 4 634 21 36 0 0 chr6 6530384 6530412 -142986625 + AT_rich Low_complexity Low_complexity 1 28 0 4 634 1075 280 114 20 chr6 6530420 6530912 -142986125 - Lx8 LINE L1 -25 7448 6911 5 634 739 304 30 20 chr6 6530943 6531245 -142985792 - Lx8 LINE L1 -753 6720 6416 5 634 625 204 33 66 chr6 6531343 6531495 -142985542 - B1_Mur1 SINE Alu -1 148 2 5 634 23 68 0 0 chr6 6531538 6531582 -142985455 + AT_rich Low_complexity Low_complexity 1 44 0 5 634 227 0 68 23 chr6 6531608 6531652 -142985385 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 5 634 779 172 0 0 chr6 6531652 6531780 -142985257 - B1_Mm SINE Alu -9 138 11 5 634 350 216 40 105 chr6 6531670 6531794 -142985243 - MT2B LTR ERVL -325 276 161 5 634 26 0 0 0 chr6 6531838 6531864 -142985173 + AT_rich Low_complexity Low_complexity 1 26 0 5 634 226 327 41 130 chr6 6531992 6532238 -142984799 - MLT2C1 LTR ERVL 0 397 174 5 634 701 274 80 45 chr6 6532241 6532931 -142984106 - L1M3 LINE L1 -441 5748 5031 5 634 23 68 0 0 chr6 6533701 6533745 -142983292 + AT_rich Low_complexity Low_complexity 1 44 0 5 634 198 0 0 0 chr6 6535669 6535691 -142981346 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 6 634 470 317 180 28 chr6 6536636 6537058 -142979979 - L2a LINE L2 -1 3425 2940 6 634 687 236 108 50 chr6 6537987 6538264 -142978773 + MER33 DNA MER1_type 5 297 -27 6 634 443 311 96 0 chr6 6538335 6538502 -142978535 - MIR SINE MIR -16 246 64 6 634 270 301 32 11 chr6 6538607 6538701 -142978336 - MER5A1 DNA MER1_type -61 105 10 6 634 267 308 54 0 chr6 6538805 6538935 -142978102 - L1MB7 LINE L1 -25 6159 6023 6 634 491 277 44 55 chr6 6538931 6539167 -142977870 - L1MB7 LINE L1 -272 5912 5627 6 634 997 304 69 3 chr6 6539167 6539514 -142977523 - ORR1D2 LTR MaLR 0 370 1 6 634 491 271 49 84 chr6 6539514 6539671 -142977366 - L1MB7 LINE L1 -558 5626 5480 6 634 279 0 0 0 chr6 6539671 6539702 -142977335 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 634 1163 43 0 0 chr6 6539702 6539840 -142977197 - B1_Mus1 SINE Alu -10 138 1 6 634 207 0 0 0 chr6 6539843 6539866 -142977171 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 634 491 271 49 84 chr6 6539866 6539969 -142977068 - L1MB7 LINE L1 -705 5479 5373 6 634 507 33 0 0 chr6 6539994 6540055 -142976982 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 7 634 230 222 0 0 chr6 6540057 6540093 -142976944 - PB1D9 SINE Alu -83 37 2 7 634 914 259 53 11 chr6 6540104 6540459 -142976578 - L1MB7 LINE L1 -873 5273 4904 6 634 25 31 0 0 chr6 6540504 6540536 -142976501 + AT_rich Low_complexity Low_complexity 1 32 0 7 634 1249 40 0 0 chr6 6543264 6543412 -142973625 - B1_Mus1 SINE Alu 0 148 1 7 634 729 245 96 79 chr6 6544003 6544358 -142972679 - L1MC3 LINE L1 -144 7641 7281 7 634 25 0 0 0 chr6 6544972 6544997 -142972040 + AT_rich Low_complexity Low_complexity 1 25 0 7 634 249 33 0 0 chr6 6545000 6545030 -142972007 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 634 519 266 53 47 chr6 6545041 6545191 -142971846 - RSINE1 SINE B4 -10 155 5 7 634 542 335 68 9 chr6 6545639 6545859 -142971178 - MER2 DNA MER2_type -6 339 107 7 634 354 344 0 8 chr6 6545893 6546016 -142971021 - MamRep137 DNA TcMar? -155 289 168 7 634 671 262 61 127 chr6 6546816 6547161 -142969876 - ORR1E LTR MaLR 0 379 42 8 634 288 0 0 0 chr6 6547233 6547265 -142969772 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 634 253 306 117 65 chr6 6547369 6547523 -142969514 + MIRm SINE MIR 33 194 -82 8 634 8002 133 52 0 chr6 6550174 6551595 -142965442 - Lx2 LINE L1 0 6997 5503 8 634 248 321 114 45 chr6 6551894 6552096 -142964941 + MLT1H LTR MaLR 334 549 0 8 634 482 335 87 57 chr6 6552392 6552598 -142964439 + MLT1B LTR MaLR 10 222 -168 8 634 207 0 0 0 chr6 6552598 6552621 -142964416 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 634 482 335 87 57 chr6 6552621 6552781 -142964256 + MLT1B LTR MaLR 223 387 -3 8 635 420 20 0 0 chr6 6554671 6554720 -142962317 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 635 207 233 16 32 chr6 6554727 6554789 -142962248 + GA-rich Low_complexity Low_complexity 1 61 0 8 635 439 95 27 0 chr6 6554965 6555039 -142961998 + (TC)n Simple_repeat Simple_repeat 1 76 0 8 635 1687 155 109 28 chr6 6555042 6555400 -142961637 - RMER1A Other Other -15 1015 629 9 635 250 227 3 65 chr6 6555457 6555550 -142961487 - RMER1A Other Other -962 68 8 9 635 317 293 61 89 chr6 6556475 6556655 -142960382 + L1MEg LINE L1 957 1131 -4953 9 635 7118 207 36 30 chr6 6556706 6559364 -142957673 + Lx7 LINE L1 4855 7521 -175 9 635 2094 166 80 3 chr6 6559426 6559812 -142957225 - MTC LTR MaLR -5 416 1 9 635 441 220 17 0 chr6 6559812 6559930 -142957107 + Lx7 LINE L1 7560 7679 -17 9 635 255 321 28 90 chr6 6560653 6560797 -142956240 - Tigger5 DNA MER2_type -2170 236 102 9 635 1155 52 0 0 chr6 6562135 6562271 -142954766 + B1_Mus2 SINE Alu 1 136 -11 9 635 239 141 30 45 chr6 6562387 6562480 -142954557 + (CAAA)n Simple_repeat Simple_repeat 1 91 0 9 635 1627 146 86 14 chr6 6563010 6563330 -142953707 - ORR1A4 LTR MaLR -8 321 1 9 635 807 168 28 0 chr6 6563582 6563725 -142953312 - B1_Mus1 SINE Alu 0 148 2 9 635 352 306 58 27 chr6 6563799 6564024 -142953013 + L1ME5 LINE L1 5655 5886 -308 9 635 585 259 84 0 chr6 6564357 6564488 -142952549 - B1_Mur2 SINE Alu -6 143 2 1 635 380 252 8 122 chr6 6564380 6564511 -142952526 - MT2B LTR ERVL -339 262 147 1 635 1944 172 40 34 chr6 6565785 6566165 -142950872 - ORR1C2 LTR MaLR 0 384 3 1 635 4557 225 70 35 chr6 6566168 6567491 -142949546 - ORR1C2-int LTR MaLR -1 1369 1 1 635 1618 196 74 22 chr6 6567491 6567856 -142949181 - ORR1C2 LTR MaLR 0 384 1 1 635 180 111 0 0 chr6 6567920 6567947 -142949090 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1 635 300 319 32 0 chr6 6568123 6568217 -142948820 - PB1D10 SINE Alu 0 117 21 1 635 271 330 40 10 chr6 6568284 6568385 -142948652 - MER20 DNA MER1_type -115 104 1 1 635 648 281 53 31 chr6 6569339 6569567 -142947470 + Lx7 LINE L1 6576 6808 -888 1 635 324 130 0 0 chr6 6569570 6569624 -142947413 - MT2B LTR ERVL 0 584 531 1 635 232 239 0 0 chr6 6569675 6569746 -142947291 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1 635 246 128 0 0 chr6 6569754 6569793 -142947244 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 1 635 3340 126 21 54 chr6 6569793 6570387 -142946650 - MT2B LTR ERVL -56 545 1 1 635 646 327 71 73 chr6 6570388 6571028 -142946009 + Lx7 LINE L1 6820 7468 -5 1 635 24 0 0 0 chr6 6571980 6572004 -142945033 + AT_rich Low_complexity Low_complexity 1 24 0 1 635 262 344 187 27 chr6 6572085 6572560 -142944477 - L2 LINE L2 -412 3007 2457 1 635 319 157 0 0 chr6 6572831 6572882 -142944155 + L2a LINE L2 3376 3426 0 1 635 315 183 21 41 chr6 6574060 6574157 -142942880 + G-rich Low_complexity Low_complexity 2 96 0 1 635 568 308 30 64 chr6 6574251 6574487 -142942550 + MER2 DNA MER2_type 1 228 -117 1 635 316 64 118 0 chr6 6574492 6574552 -142942485 + B1_Mus2 SINE Alu 1 66 -51 1 635 462 140 0 0 chr6 6574552 6574652 -142942385 + (CAGG)n Simple_repeat Simple_repeat 4 103 0 1 635 250 239 0 66 chr6 6574654 6574730 -142942307 + RLTR25B LTR ERVK 428 498 -530 1 635 761 104 0 0 chr6 6574671 6574777 -142942260 + B1_Mus2 SINE Alu 40 145 -2 1 635 2510 28 4 286 chr6 6574805 6575348 -142941689 - RLTR10 LTR ERVK 0 390 1 1 635 8369 19 0 2 chr6 6575350 6576347 -142940690 - RLTR10-int LTR ERVK -3 1984 990 1 635 7905 22 1 0 chr6 6576424 6577373 -142939664 - RLTR10-int LTR ERVK -999 988 39 1 635 2485 26 2 282 chr6 6577384 6577923 -142939114 - RLTR10 LTR ERVK -2 388 1 1 635 278 283 81 0 chr6 6578244 6578417 -142938620 + L1M5 LINE L1 4380 4566 -1580 1 635 2155 152 14 22 chr6 6578723 6579092 -142937945 - RLTR17 LTR ERVK -326 366 1 1 635 2260 199 22 32 chr6 6579092 6579683 -142937354 - RMER3D-int LTR ERVK 0 2842 2258 1 635 2665 176 22 60 chr6 6579682 6580364 -142936673 - RMER3D-int LTR ERVK -1182 1660 485 1 635 674 103 42 8 chr6 6580379 6580497 -142936540 - RMER3D-int LTR ERVK -2232 610 489 1 635 1224 252 60 43 chr6 6580626 6581095 -142935942 - RMER3D-int LTR ERVK -2365 477 1 1 635 2174 200 52 2 chr6 6581133 6581534 -142935503 - RLTR17 LTR ERVK -69 623 203 1 635 332 354 94 13 chr6 6581772 6581921 -142935116 - MER20 DNA MER1_type -30 189 29 1 635 421 309 12 6 chr6 6581957 6582126 -142934911 - L1M5 LINE L1 -528 5636 5467 1 635 414 317 87 50 chr6 6582171 6582413 -142934624 - L1M5 LINE L1 -746 5400 5150 1 635 318 79 31 16 chr6 6582481 6582545 -142934492 + (TTG)n Simple_repeat Simple_repeat 2 66 0 1 635 1105 311 58 49 chr6 6582554 6583730 -142933307 + Lx8 LINE L1 4737 5903 -1570 1 635 332 254 125 105 chr6 6584493 6584806 -142932231 + Lx8 LINE L1 7147 7465 -8 1 635 1215 262 43 6 chr6 6585129 6585475 -142931562 + MER121 Unknown Unknown 32 390 -22 1 635 213 39 0 0 chr6 6585765 6585791 -142931246 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1 635 2960 173 55 7 chr6 6586084 6586626 -142930411 + RLTR20D LTR ERVK 1 568 0 1 635 978 288 48 45 chr6 6586671 6586980 -142930057 + MLT2B3 LTR ERVL 178 487 -67 1 635 339 25 0 0 chr6 6586980 6587020 -142930017 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 635 266 312 43 68 chr6 6587077 6587194 -142929843 - L2a LINE L2 -6 3420 3307 1 635 324 0 0 0 chr6 6588657 6588693 -142928344 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 635 538 326 121 12 chr6 6588693 6589025 -142928012 - Lx8 LINE L1 -4 7469 7102 1 635 30688 83 11 5 chr6 6589150 6594334 -142922703 + L1Md_F2 LINE L1 370 5586 -297 1 635 7428 75 2 5 chr6 6594335 6595325 -142921712 + L1Md_F2 LINE L1 5588 6574 -8 1 635 1138 100 0 11 chr6 6595680 6595862 -142921175 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 635 1047 109 11 8 chr6 6595887 6596158 -142920879 + (TTCC)n Simple_repeat Simple_repeat 1 272 0 1 635 240 35 0 0 chr6 6596158 6596187 -142920850 + (CTTG)n Simple_repeat Simple_repeat 3 31 0 1 635 986 114 11 11 chr6 6596187 6596274 -142920763 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 1 635 708 182 17 0 chr6 6596298 6596474 -142920563 + CT-rich Low_complexity Low_complexity 2 180 0 1 635 287 177 0 16 chr6 6596485 6596548 -142920489 + CT-rich Low_complexity Low_complexity 1 62 0 1 635 312 336 65 14 chr6 6596619 6596718 -142920319 - HAL1-3A_ME LINE L1 -421 2437 2333 1 635 1145 106 0 11 chr6 6596718 6596899 -142920138 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 1 635 312 336 65 14 chr6 6596899 6596938 -142920099 - HAL1-3A_ME LINE L1 -526 2332 2292 1 635 286 274 65 10 chr6 6600192 6600318 -142916719 - MLT1H2 LTR MaLR -290 199 70 1 635 1544 79 68 40 chr6 6601809 6602104 -142914933 + L1Md_F2 LINE L1 6326 6582 0 1 635 464 257 134 16 chr6 6602555 6602741 -142914296 + Tigger7 DNA MER2_type 2281 2488 -3 1 635 802 233 33 23 chr6 6602948 6603163 -142913874 + ID_B1 SINE B4 2 218 -6 1 635 243 88 0 0 chr6 6605816 6605850 -142911187 + (GAAA)n Simple_repeat Simple_repeat 4 37 0 1 635 771 11 0 0 chr6 6607126 6607214 -142909823 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 1 635 396 0 0 0 chr6 6608014 6608058 -142908979 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 635 201 269 0 29 chr6 6608378 6608447 -142908590 + T-rich Low_complexity Low_complexity 4 70 0 1 635 186 321 82 12 chr6 6611504 6611589 -142905448 + L2 LINE L2 2795 2885 -534 1 635 395 315 74 30 chr6 6612102 6612305 -142904732 + L1ME3B LINE L1 5694 5905 -335 1 635 315 0 0 0 chr6 6612745 6612780 -142904257 + (CTG)n Simple_repeat Simple_repeat 1 35 0 1 635 708 276 96 41 chr6 6613268 6613634 -142903403 + L1MB3 LINE L1 5778 6163 -20 1 635 737 372 62 4 chr6 6613877 6614152 -142902885 - Tigger7 DNA MER2_type -2198 293 3 1 635 290 299 74 13 chr6 6615670 6615819 -142901218 + MIRb SINE MIR 62 219 -49 1 635 495 256 41 6 chr6 6616928 6617097 -142899940 + Lx9 LINE L1 7294 7468 -176 1 635 387 0 0 0 chr6 6617102 6617145 -142899892 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 635 264 276 118 66 chr6 6617391 6617527 -142899510 + B4A SINE B4 150 292 0 1 635 573 310 82 45 chr6 6617938 6618203 -142898834 + MLT1C LTR MaLR 110 390 -77 1 635 2007 134 74 71 chr6 6618203 6618596 -142898441 + ORR1B1 LTR MaLR 1 394 0 1 635 573 310 82 45 chr6 6618596 6618661 -142898376 + MLT1C LTR MaLR 391 452 -15 1 635 222 364 86 30 chr6 6619267 6619499 -142897538 + L2 LINE L2 2597 2841 -578 1 635 1122 284 133 9 chr6 6620321 6620579 -142896458 - MTD LTR MaLR -14 405 129 1 635 246 105 0 0 chr6 6620579 6620617 -142896420 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 635 1122 284 133 9 chr6 6620617 6620703 -142896334 - MTD LTR MaLR -291 128 18 1 635 182 277 71 12 chr6 6621098 6621182 -142895855 - L2c LINE L2 -327 3060 2972 1 635 234 0 0 0 chr6 6621301 6621327 -142895710 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1 635 667 198 2 0 chr6 6622161 6622283 -142894754 + B1_Mus2 SINE Alu 17 140 -9 1 635 258 105 0 0 chr6 6622283 6622321 -142894716 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 1 635 3492 149 39 19 chr6 6623894 6624530 -142892507 - Lx LINE L1 0 6654 6006 1 635 533 64 13 0 chr6 6624885 6624963 -142892074 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1 635 21 36 0 0 chr6 6625002 6625030 -142892007 + AT_rich Low_complexity Low_complexity 1 28 0 1 635 599 284 7 0 chr6 6625642 6625783 -142891254 + ID_B1 SINE B4 83 224 0 1 635 435 149 0 0 chr6 6626242 6626316 -142890721 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 635 312 274 43 50 chr6 6627539 6627700 -142889337 - MER103 DNA DNA 0 166 7 1 635 431 35 18 0 chr6 6627832 6627889 -142889148 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1 635 1120 74 117 0 chr6 6627890 6628052 -142888985 - B2_Mm1a SINE B2 -9 184 4 1 635 1316 58 0 39 chr6 6628060 6628238 -142888799 - B2_Mm2 SINE B2 -24 171 1 1 635 218 320 0 0 chr6 6628267 6628317 -142888720 - MIRb SINE MIR -194 74 25 1 635 562 249 5 150 chr6 6628650 6628834 -142888203 + B3A SINE B2 1 156 -42 1 635 180 0 0 0 chr6 6628834 6628854 -142888183 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 635 562 249 5 150 chr6 6628854 6628882 -142888155 + B3A SINE B2 157 182 -16 1 635 235 217 0 0 chr6 6628882 6628928 -142888109 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 635 353 22 0 21 chr6 6629544 6629591 -142887446 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 635 2543 180 91 13 chr6 6632174 6632702 -142884335 + RMER4B LTR ERVK 17 585 0 1 635 380 287 26 13 chr6 6632813 6632965 -142884072 + (TA)n Simple_repeat Simple_repeat 2 155 0 1 635 499 333 80 27 chr6 6634523 6634593 -142882444 + B3A SINE B2 1 70 -128 1 635 276 30 0 0 chr6 6634593 6634626 -142882411 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 635 499 293 67 168 chr6 6634626 6634764 -142882273 + B3A SINE B2 71 197 -1 1 635 591 53 0 0 chr6 6635453 6635528 -142881509 + (TCC)n Simple_repeat Simple_repeat 3 77 0 1 635 538 27 40 0 chr6 6635566 6635641 -142881396 + (TTTC)n Simple_repeat Simple_repeat 4 81 0 1 635 582 308 60 27 chr6 6636755 6637287 -142879750 - Lx9 LINE L1 -716 6928 6189 1 635 432 77 0 0 chr6 6637302 6637367 -142879670 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 635 245 257 35 28 chr6 6638167 6638255 -142878782 + MIRb SINE MIR 14 108 -160 1 635 606 93 0 0 chr6 6638399 6638485 -142878552 + (TCC)n Simple_repeat Simple_repeat 3 88 0 1 635 1326 78 0 0 chr6 6639024 6639204 -142877833 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 635 276 200 0 0 chr6 6639206 6639271 -142877766 + GA-rich Low_complexity Low_complexity 2 66 0 1 635 22 0 0 0 chr6 6639729 6639751 -142877286 + AT_rich Low_complexity Low_complexity 1 22 0 1 635 26 0 0 0 chr6 6640111 6640137 -142876900 + AT_rich Low_complexity Low_complexity 1 26 0 1 635 213 43 64 21 chr6 6640833 6640880 -142876157 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1 635 649 215 7 36 chr6 6640916 6641056 -142875981 + RSINE1 SINE B4 1 136 -29 1 635 183 42 0 0 chr6 6641754 6641778 -142875259 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 635 474 340 54 45 chr6 6641834 6642056 -142874981 + Tigger5 DNA MER2_type 19 242 -2164 2 635 457 235 23 26 chr6 6642711 6642840 -142874197 + B1_Mur1 SINE Alu 2 144 -5 2 635 312 305 36 12 chr6 6642874 6642957 -142874080 + PB1D10 SINE Alu 1 85 -32 2 635 687 235 117 5 chr6 6643421 6643609 -142873428 + B3 SINE B2 2 210 -6 2 635 513 0 0 0 chr6 6644272 6644329 -142872708 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 2 635 567 0 0 0 chr6 6644393 6644456 -142872581 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 635 22 0 0 0 chr6 6644861 6644883 -142872154 + AT_rich Low_complexity Low_complexity 1 22 0 2 635 32 26 0 0 chr6 6646917 6646956 -142870081 + AT_rich Low_complexity Low_complexity 1 39 0 2 635 537 16 0 0 chr6 6647075 6647137 -142869900 + (GAGAA)n Simple_repeat Simple_repeat 2 63 0 2 635 241 333 0 0 chr6 6648893 6648962 -142868075 + CT-rich Low_complexity Low_complexity 3 71 0 2 635 551 309 6 53 chr6 6649195 6649366 -142867671 + RSINE1 SINE B4 3 165 0 2 635 30 0 0 0 chr6 6649430 6649460 -142867577 + AT_rich Low_complexity Low_complexity 1 30 0 2 635 36265 30 0 0 chr6 6649888 6656085 -142860952 - L1Md_T LINE L1 0 6585 291 2 635 252 0 0 0 chr6 6658427 6658455 -142858582 + (T)n Simple_repeat Simple_repeat 1 28 0 2 635 643 81 0 20 chr6 6658798 6658899 -142858138 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 635 316 22 0 0 chr6 6659049 6659094 -142857943 - L1_Mus1 LINE L1 0 6567 6523 2 635 307 280 13 0 chr6 6660058 6660133 -142856904 - MER46C DNA MER2_type -1 337 262 2 635 291 263 189 33 chr6 6660875 6660997 -142856040 + B1F1 SINE Alu 1 141 -8 2 635 243 0 0 0 chr6 6661657 6661684 -142855353 + (A)n Simple_repeat Simple_repeat 1 27 0 2 635 8317 112 66 6 chr6 6661897 6664188 -142852849 - L1_Mus3 LINE L1 0 6638 4175 2 635 1118 48 12 6 chr6 6664179 6664346 -142852691 + MusHAL1 LINE L1 1789 1956 -756 2 635 256 230 80 11 chr6 6664525 6664613 -142852424 - MTEb LTR MaLR -8 371 278 2 635 735 295 107 44 chr6 6665345 6665643 -142851394 - MLT1A1 LTR MaLR -28 380 64 2 635 1769 184 35 48 chr6 6667109 6667480 -142849557 + ORR1B2 LTR MaLR 1 366 -1 2 635 1272 204 29 17 chr6 6667717 6667956 -142849081 + MTC LTR MaLR 1 242 -179 2 635 243 176 66 26 chr6 6667985 6668061 -142848976 + Lx8 LINE L1 7395 7473 0 2 635 1226 54 0 0 chr6 6668115 6668263 -142848774 + B1_Mus1 SINE Alu 1 148 0 2 635 222 37 0 0 chr6 6668263 6668290 -142848747 + (A)n Simple_repeat Simple_repeat 1 27 0 2 635 194 375 49 16 chr6 6668375 6668497 -142848540 - L2b LINE L2 -2 3373 3248 2 635 520 332 64 30 chr6 6669058 6669291 -142847746 + MLT1A0 LTR MaLR 107 347 -18 2 635 30 69 0 0 chr6 6671183 6671241 -142845796 + AT_rich Low_complexity Low_complexity 1 58 0 2 635 34514 50 8 4 chr6 6671666 6676990 -142840047 + L1Md_F LINE L1 281 5586 -297 2 635 7893 36 40 0 chr6 6676990 6677948 -142839089 + L1Md_T LINE L1 5587 6582 0 2 635 728 239 28 6 chr6 6677953 6678134 -142838903 + Lx6 LINE L1 7274 7458 -2 2 635 1125 228 182 9 chr6 6678717 6679036 -142838001 + ORR1D1 LTR MaLR 1 374 0 2 635 2632 198 64 53 chr6 6680068 6680682 -142836355 - Lx9 LINE L1 -2 7642 7020 2 635 240 35 0 0 chr6 6680682 6680711 -142836326 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 2 635 2632 198 64 53 chr6 6680711 6680796 -142836241 - Lx9 LINE L1 -625 7019 6935 2 635 1228 218 79 44 chr6 6680811 6680968 -142836069 + ORR1C1 LTR MaLR 19 163 -215 2 635 921 83 0 0 chr6 6680968 6681100 -142835937 + (TC)n Simple_repeat Simple_repeat 1 132 0 2 635 1228 218 79 44 chr6 6681100 6681259 -142835778 + ORR1C1 LTR MaLR 164 345 -33 2 635 2337 237 31 35 chr6 6681259 6681880 -142835157 - Lx9 LINE L1 -719 6925 6308 2 635 681 53 0 0 chr6 6682029 6682123 -142834914 + (CA)n Simple_repeat Simple_repeat 2 95 0 2 635 1091 309 147 4 chr6 6683781 6684291 -142832746 - Lx8 LINE L1 -253 7220 6638 2 635 261 359 122 5 chr6 6684370 6684566 -142832471 - MIRb SINE MIR -10 258 40 2 636 943 75 112 8 chr6 6686612 6686746 -142830291 - B1_Mus1 SINE Alu 0 148 1 2 636 526 294 62 47 chr6 6686752 6687027 -142830010 - MLT1C LTR MaLR 0 467 189 2 636 257 132 0 42 chr6 6687038 6687109 -142829928 + A-rich Low_complexity Low_complexity 1 68 0 2 636 247 256 87 65 chr6 6687122 6687214 -142829823 - MLT1C LTR MaLR -245 145 52 2 636 27 62 0 0 chr6 6687611 6687659 -142829378 + AT_rich Low_complexity Low_complexity 1 48 0 2 636 360 287 206 20 chr6 6687859 6688111 -142828926 + L1MC LINE L1 3474 3772 -2374 2 636 571 285 68 58 chr6 6688132 6688337 -142828700 + B3 SINE B2 1 207 -9 2 636 27297 67 5 2 chr6 6688579 6693010 -142824027 - L1Md_F2 LINE L1 0 6582 2137 2 636 327 286 0 0 chr6 6693040 6693110 -142823927 - B1_Mur4 SINE Alu -80 70 1 2 636 636 178 0 0 chr6 6693130 6693231 -142823806 + B1_Mur1 SINE Alu 43 143 -6 2 636 259 259 97 9 chr6 6693552 6693665 -142823372 + Lx8 LINE L1 7350 7472 -1 2 636 295 319 97 50 chr6 6694045 6694433 -142822604 + L1ME3B LINE L1 5689 6095 -145 2 636 507 33 0 0 chr6 6694433 6694494 -142822543 + (GAAAA)n Simple_repeat Simple_repeat 2 62 0 2 636 295 319 97 50 chr6 6694494 6694567 -142822470 + L1ME3B LINE L1 6096 6172 -68 2 636 186 374 77 0 chr6 6696370 6696461 -142820576 + MIRc SINE MIR 61 158 -110 2 636 300 221 21 78 chr6 6697718 6697851 -142819186 + RMER17C LTR ERVK 67 193 -217 2 636 342 0 0 0 chr6 6697851 6697889 -142819148 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 636 297 0 0 0 chr6 6697889 6697921 -142819116 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 636 851 142 0 7 chr6 6697984 6698133 -142818904 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 2 636 1828 14 0 0 chr6 6698332 6698547 -142818490 + L1Md_T LINE L1 5372 5586 -297 2 636 9006 6 0 0 chr6 6698547 6699543 -142817494 + L1Md_T LINE L1 5587 6582 0 2 636 1105 293 52 33 chr6 6700282 6700649 -142816388 - MTEa LTR MaLR -5 374 1 2 636 394 182 15 0 chr6 6700684 6700750 -142816287 - ID4 SINE ID -15 68 2 2 636 1022 265 87 30 chr6 6700809 6701144 -142815893 - MLT1B LTR MaLR -36 354 1 2 636 387 0 0 0 chr6 6701484 6701527 -142815510 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 636 2321 119 42 3 chr6 6702487 6702840 -142814197 - ORR1B2 LTR MaLR 0 367 1 2 636 506 252 96 76 chr6 6703332 6703581 -142813456 + L1M2 LINE L1 4962 5279 -864 2 636 192 77 0 0 chr6 6703581 6703607 -142813430 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 636 506 306 57 39 chr6 6703607 6703917 -142813120 + L1M2 LINE L1 5280 5594 -595 2 636 240 0 75 0 chr6 6703917 6703957 -142813080 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 636 262 320 57 45 chr6 6703957 6703995 -142813042 + L1M2 LINE L1 5595 5641 -548 2 636 252 313 43 11 chr6 6704009 6704215 -142812822 + L1M2 LINE L1 5693 5911 -392 2 636 733 216 0 0 chr6 6706725 6706859 -142810178 - B1_Mus2 SINE Alu -8 139 6 2 636 679 228 167 0 chr6 6707942 6708122 -142808915 + B3 SINE B2 1 210 -6 2 636 283 243 0 39 chr6 6708132 6708209 -142808828 + GA-rich Low_complexity Low_complexity 2 75 0 2 636 442 296 81 21 chr6 6708232 6708407 -142808630 + MLT1F1 LTR MaLR 385 556 -13 2 636 455 304 68 7 chr6 6708539 6708685 -142808352 - RSINE1 SINE B4 -8 157 3 2 636 2301 75 63 0 chr6 6708863 6709181 -142807856 - ORR1A1 LTR MaLR -8 338 1 2 636 285 29 0 0 chr6 6709542 6709576 -142807461 + (TCC)n Simple_repeat Simple_repeat 3 36 0 2 636 653 241 20 14 chr6 6709641 6709788 -142807249 - B1_Mur2 SINE Alu 0 149 2 2 636 201 323 143 16 chr6 6712721 6712847 -142804190 - L3 LINE CR1 -3511 978 837 2 636 194 350 30 20 chr6 6712927 6713026 -142804011 + L2a LINE L2 3324 3423 -3 2 636 730 116 14 0 chr6 6713811 6713949 -142803088 + (TG)n Simple_repeat Simple_repeat 2 141 0 2 636 400 366 52 17 chr6 6716385 6716616 -142800421 + MLT1A1 LTR MaLR 52 290 -118 2 636 2219 277 36 30 chr6 6717533 6717869 -142799168 + Lx9 LINE L1 6305 6628 -1016 2 636 6211 63 8 0 chr6 6717869 6718659 -142798378 - L1Md_F2 LINE L1 -1 6581 5786 2 636 2219 277 36 30 chr6 6718659 6719063 -142797974 + Lx9 LINE L1 6629 7050 -594 2 636 378 0 0 0 chr6 6719192 6719234 -142797803 + (CTTA)n Simple_repeat Simple_repeat 2 43 0 2 636 854 117 0 0 chr6 6719243 6719363 -142797674 - B2_Mm2 SINE B2 -55 140 21 2 636 661 311 39 39 chr6 6719348 6719552 -142797485 + B4A SINE B4 29 232 -60 2 636 817 223 0 0 chr6 6719552 6719700 -142797337 + B1_Mur4 SINE Alu 3 150 0 2 636 290 280 0 26 chr6 6719717 6719794 -142797243 + B4A SINE B4 216 290 -2 2 636 307 305 85 9 chr6 6719831 6719937 -142797100 - LTR33B LTR ERVL -2 501 388 2 636 1184 172 58 21 chr6 6720363 6720588 -142796449 + B3 SINE B2 8 216 0 2 636 304 316 91 0 chr6 6720802 6720989 -142796048 - L1MB1 LINE L1 -41 6127 5924 2 636 952 269 37 116 chr6 6721004 6721625 -142795412 + L1M3 LINE L1 3864 4435 -1705 2 636 411 191 34 27 chr6 6721630 6721753 -142795284 - RMER1B Other Other -9 1057 948 2 636 1023 90 0 0 chr6 6721753 6721897 -142795140 + (GGAA)n Simple_repeat Simple_repeat 3 146 0 2 636 411 185 33 25 chr6 6721897 6721912 -142795125 - RMER1B Other Other -119 947 935 2 636 595 89 78 0 chr6 6721930 6722020 -142795017 - RMER1B Other Other -200 866 770 2 636 889 312 103 30 chr6 6722276 6722702 -142794335 - MER99 DNA hAT? -3 828 372 2 636 1163 274 104 9 chr6 6722732 6723102 -142793935 - MTC LTR MaLR -25 396 3 2 636 532 325 21 43 chr6 6723134 6723414 -142793623 - MER99 DNA hAT? -552 279 6 2 636 355 280 47 71 chr6 6723832 6724038 -142792999 - L1MA4 LINE L1 -370 5930 5693 2 636 234 0 0 0 chr6 6724267 6724293 -142792744 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 636 356 290 106 40 chr6 6724374 6724525 -142792512 - Lx8 LINE L1 -377 7096 6936 2 636 228 240 80 0 chr6 6727621 6727671 -142789366 + ID4_ SINE ID 21 74 -9 2 636 233 227 0 0 chr6 6727628 6727672 -142789365 + tRNA-Ala-GCY_ tRNA tRNA 26 69 -6 2 636 385 307 0 0 chr6 6728648 6728736 -142788301 + 5S rRNA rRNA 3 90 -31 2 636 1317 228 42 65 chr6 6729295 6729680 -142787357 - MTE2a LTR MaLR 0 379 4 3 636 744 65 0 0 chr6 6729906 6730013 -142787024 + (GA)n Simple_repeat Simple_repeat 2 108 0 3 636 567 312 179 17 chr6 6730066 6730301 -142786736 - B4A SINE B4 -19 273 1 3 636 517 273 183 34 chr6 6730351 6730613 -142786424 - Lx8 LINE L1 0 7473 7173 3 636 230 261 21 52 chr6 6731695 6731792 -142785245 - LTR88c LTR Genie? -530 332 239 3 636 24 32 0 0 chr6 6731992 6732023 -142785014 + AT_rich Low_complexity Low_complexity 1 31 0 3 636 361 336 91 31 chr6 6732122 6732408 -142784629 - L2a LINE L2 0 3426 3124 3 636 194 0 39 0 chr6 6732982 6733008 -142784029 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 636 827 236 0 0 chr6 6733027 6733175 -142783862 + B1_Mur1 SINE Alu 1 148 -1 3 636 396 343 67 0 chr6 6733504 6733682 -142783355 - L2a LINE L2 -518 2901 2712 3 636 3658 28 2 0 chr6 6733914 6734309 -142782728 - MTA_Mm LTR MaLR 0 396 1 3 636 194 0 39 0 chr6 6736441 6736467 -142780570 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 636 597 154 26 60 chr6 6736768 6736885 -142780152 + B1_Mur2 SINE Alu 37 149 0 3 636 192 200 0 0 chr6 6738897 6738952 -142778085 + CT-rich Low_complexity Low_complexity 2 56 0 3 636 189 0 0 0 chr6 6738952 6738973 -142778064 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 636 582 41 0 0 chr6 6738973 6739045 -142777992 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 636 286 209 15 2 chr6 6739082 6739146 -142777891 - MIR SINE MIR -58 210 138 3 636 324 0 0 0 chr6 6740046 6740082 -142776955 + (TAGA)n Simple_repeat Simple_repeat 4 39 0 3 636 442 274 126 85 chr6 6740133 6740570 -142776467 - MLT2B2 LTR ERVL -26 530 1 3 636 1649 37 16 0 chr6 6741504 6741693 -142775344 - B2_Mm1t SINE B2 0 193 2 3 636 182 125 31 0 chr6 6742054 6742086 -142774951 - L2 LINE L2 -2251 1168 1136 3 636 2235 128 22 0 chr6 6743165 6743484 -142773553 + ORR1A3 LTR MaLR 1 326 0 3 636 180 200 0 0 chr6 6743700 6743740 -142773297 + (CAT)n Simple_repeat Simple_repeat 3 42 0 3 636 1942 176 28 81 chr6 6744511 6744980 -142772057 + Lx4B LINE L1 6615 7058 0 3 636 396 0 0 0 chr6 6745093 6745137 -142771900 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 636 23 0 0 0 chr6 6746403 6746426 -142770611 + AT_rich Low_complexity Low_complexity 1 23 0 3 636 421 254 105 0 chr6 6746510 6746624 -142770413 - RSINE1 SINE B4 -36 129 4 3 636 238 326 50 30 chr6 6746673 6746774 -142770263 - MIRb SINE MIR -144 124 22 3 636 459 0 0 0 chr6 6747279 6747330 -142769707 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 636 192 77 0 0 chr6 6748124 6748150 -142768887 + (T)n Simple_repeat Simple_repeat 1 26 0 3 636 243 0 0 0 chr6 6748472 6748499 -142768538 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 3 636 249 33 0 0 chr6 6748505 6748535 -142768502 + (CATA)n Simple_repeat Simple_repeat 2 31 0 3 636 264 30 0 0 chr6 6748588 6748621 -142768416 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 636 21 36 0 0 chr6 6748702 6748730 -142768307 + AT_rich Low_complexity Low_complexity 1 28 0 3 636 897 166 0 27 chr6 6749554 6749703 -142767334 - B1_Mus2 SINE Alu -2 145 1 3 636 220 70 47 0 chr6 6749891 6749934 -142767103 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 3 636 939 193 114 5 chr6 6750854 6751047 -142765990 - B3 SINE B2 -2 214 1 3 636 1137 58 0 0 chr6 6753072 6753211 -142763826 - L1_Mus1 LINE L1 0 6567 6429 3 636 315 0 0 0 chr6 6754282 6754317 -142762720 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 3 636 420 20 0 0 chr6 6754329 6754378 -142762659 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 636 749 310 98 0 chr6 6754825 6754987 -142762050 - B4A SINE B4 -8 284 111 3 636 980 114 14 7 chr6 6754987 6755128 -142761909 - B1_Mur3 SINE Alu -6 143 2 3 636 749 310 98 0 chr6 6755128 6755220 -142761817 - B4A SINE B4 -182 110 7 3 636 452 18 18 0 chr6 6755311 6755368 -142761669 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 636 740 205 0 6 chr6 6755779 6755946 -142761091 + GA-rich Low_complexity Low_complexity 2 167 0 3 636 1251 81 0 0 chr6 6755957 6756130 -142760907 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 3 636 941 108 0 13 chr6 6756602 6756752 -142760285 + (TTTC)n Simple_repeat Simple_repeat 2 149 0 3 636 311 239 79 44 chr6 6756756 6756870 -142760167 - B1F SINE Alu -8 141 24 3 636 414 0 0 0 chr6 6757966 6758012 -142759025 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 636 1014 115 0 17 chr6 6759040 6759217 -142757820 + (GAA)n Simple_repeat Simple_repeat 3 176 0 3 636 351 0 0 0 chr6 6759331 6759370 -142757667 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 636 390 271 93 0 chr6 6759672 6759790 -142757247 - MER94 DNA AcHobo -5 129 1 3 636 578 209 12 139 chr6 6759967 6760154 -142756883 - RSINE1 SINE B4 -2 163 3 3 636 2426 193 63 14 chr6 6760272 6761008 -142756029 + L1_Rod LINE L1 790 1564 -4283 3 636 789 11 0 0 chr6 6761961 6762051 -142754986 + (GAA)n Simple_repeat Simple_repeat 2 91 0 3 636 274 306 76 76 chr6 6762294 6762478 -142754559 - L2 LINE L2 -433 2986 2803 3 636 493 239 170 31 chr6 6762638 6762897 -142754140 - L2 LINE L2 -942 2477 2183 3 636 22 70 0 0 chr6 6762981 6763024 -142754013 + AT_rich Low_complexity Low_complexity 1 43 0 3 636 916 275 19 5 chr6 6763542 6763754 -142753283 + ID_B1 SINE B4 6 220 -4 3 636 180 0 0 0 chr6 6764023 6764043 -142752994 + (T)n Simple_repeat Simple_repeat 1 20 0 3 636 1295 54 0 0 chr6 6764043 6764190 -142752847 - B1_Mus2 SINE Alu 0 147 1 3 636 387 0 0 0 chr6 6764347 6764390 -142752647 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 636 268 339 61 8 chr6 6764727 6764858 -142752179 - L1MC4a LINE L1 -1957 5925 5788 3 636 189 0 0 0 chr6 6764951 6764972 -142752065 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 636 3069 254 68 18 chr6 6765363 6766289 -142750748 + RCHARR1 DNA MER1_type 3 974 0 3 636 354 235 103 17 chr6 6766551 6766668 -142750369 - PB1 SINE Alu 0 127 1 3 636 2661 243 75 26 chr6 6767204 6767854 -142749183 - Lx6 LINE L1 0 7460 6779 3 636 466 203 14 0 chr6 6767857 6767995 -142749042 + GA-rich Low_complexity Low_complexity 3 142 0 3 636 225 0 0 0 chr6 6768028 6768053 -142748984 + (A)n Simple_repeat Simple_repeat 1 25 0 3 636 216 162 0 0 chr6 6768963 6769000 -142748037 + C-rich Low_complexity Low_complexity 1 37 0 3 636 664 217 31 0 chr6 6771676 6771805 -142745232 - B1_Mur3 SINE Alu -15 134 2 3 636 234 0 0 0 chr6 6771909 6771935 -142745102 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 636 310 287 0 0 chr6 6771939 6772040 -142744997 + A-rich Low_complexity Low_complexity 1 101 0 3 636 771 183 20 40 chr6 6775380 6775528 -142741509 + B1_Mur2 SINE Alu 5 149 0 3 636 1040 246 52 84 chr6 6775543 6775924 -142741113 + ORR1D1 LTR MaLR 1 369 -5 3 636 232 48 23 23 chr6 6776126 6776169 -142740868 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 636 406 275 231 38 chr6 6776942 6777180 -142739857 + B4A SINE B4 1 284 -8 3 636 5469 99 110 23 chr6 6777590 6777974 -142739063 + RMER17A2 LTR ERVK 1 445 -461 3 636 495 0 0 0 chr6 6777974 6778029 -142739008 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 636 5185 99 110 23 chr6 6778029 6778477 -142738560 + RMER17A2 LTR ERVK 446 906 0 3 636 499 298 60 22 chr6 6778856 6779038 -142737999 - MIRb SINE MIR -21 247 59 3 636 318 317 39 10 chr6 6779230 6779332 -142737705 - B1F SINE Alu -8 141 37 3 636 792 197 7 0 chr6 6781393 6781540 -142735497 - B1_Mur3 SINE Alu -1 148 1 3 636 7271 74 10 3 chr6 6781621 6782547 -142734490 - L1Md_F2 LINE L1 -12 6570 5639 3 636 301 291 0 60 chr6 6783042 6783126 -142733911 - PB1D10 SINE Alu -5 112 34 3 636 850 177 0 60 chr6 6783222 6783372 -142733665 + B1_Mur3 SINE Alu 2 142 -7 3 636 594 274 49 32 chr6 6783406 6783591 -142733446 - B3 SINE B2 -28 188 1 3 636 553 185 89 75 chr6 6784011 6784157 -142732880 + B1_Mur3 SINE Alu 2 149 0 3 636 277 93 18 18 chr6 6784157 6784212 -142732825 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 3 636 432 0 0 0 chr6 6784304 6784352 -142732685 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 636 204 40 0 0 chr6 6785443 6785468 -142731569 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 636 900 83 0 0 chr6 6787128 6787272 -142729765 + (CA)n Simple_repeat Simple_repeat 1 144 0 3 636 359 327 85 0 chr6 6787820 6787973 -142729064 - MIR SINE MIR 0 262 97 3 636 255 247 0 129 chr6 6788349 6788442 -142728595 + B4 SINE B4 2 82 -210 3 636 392 91 0 15 chr6 6788501 6788568 -142728469 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 636 27 29 0 0 chr6 6788572 6788606 -142728431 + AT_rich Low_complexity Low_complexity 1 34 0 3 636 465 158 0 0 chr6 6788932 6789014 -142728023 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 636 229 292 14 27 chr6 6789182 6789256 -142727781 + RLTR25B LTR ERVK 427 499 -529 3 636 506 215 9 18 chr6 6789196 6789305 -142727732 + B1_Mus2 SINE Alu 40 147 0 3 636 9565 118 33 7 chr6 6789382 6790915 -142726122 - Lx4A LINE L1 0 7058 5482 3 636 207 338 14 14 chr6 6791973 6792042 -142724995 + L4 LINE RTE 1958 2026 -3 3 636 356 283 118 7 chr6 6792425 6792578 -142724459 + MamRep434 DNA TcMar 95 264 -162 3 636 680 241 0 0 chr6 6792688 6792825 -142724212 - B1F SINE Alu -8 141 5 3 636 672 214 17 0 chr6 6794287 6794404 -142722633 + B3A SINE B2 1 119 -79 4 636 973 76 14 0 chr6 6795745 6795889 -142721148 + (TC)n Simple_repeat Simple_repeat 1 146 0 4 636 378 0 0 0 chr6 6796115 6796157 -142720880 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 636 777 164 0 0 chr6 6796809 6796949 -142720088 + GA-rich Low_complexity Low_complexity 2 141 0 4 636 207 0 0 0 chr6 6797231 6797254 -142719783 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 636 219 188 0 0 chr6 6799017 6799065 -142717972 + GA-rich Low_complexity Low_complexity 2 49 0 4 636 342 0 0 0 chr6 6799410 6799448 -142717589 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 4 636 349 228 9 73 chr6 6800007 6800116 -142716921 + L1MEg LINE L1 1846 1947 -4137 4 636 562 95 10 10 chr6 6803749 6803845 -142713192 + (TCCC)n Simple_repeat Simple_repeat 1 96 0 4 636 203 234 0 0 chr6 6806216 6806263 -142710774 + G-rich Low_complexity Low_complexity 1 47 0 4 636 252 0 0 0 chr6 6807135 6807163 -142709874 + (CAA)n Simple_repeat Simple_repeat 1 28 0 4 636 450 0 0 0 chr6 6808906 6808956 -142708081 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 636 298 42 20 20 chr6 6809010 6809059 -142707978 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 636 441 0 0 0 chr6 6809059 6809107 -142707930 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 636 192 217 0 0 chr6 6813085 6813131 -142703906 + C-rich Low_complexity Low_complexity 4 49 0 4 636 23 33 0 0 chr6 6813164 6813194 -142703843 + AT_rich Low_complexity Low_complexity 1 30 0 4 636 198 91 0 0 chr6 6813237 6813270 -142703767 + (T)n Simple_repeat Simple_repeat 1 33 0 4 636 507 73 0 0 chr6 6813453 6813521 -142703516 + (CAG)n Simple_repeat Simple_repeat 3 70 0 4 636 270 56 0 0 chr6 6813521 6813557 -142703480 + (CCG)n Simple_repeat Simple_repeat 3 38 0 4 636 192 40 0 0 chr6 6813617 6813642 -142703395 + (CGG)n Simple_repeat Simple_repeat 1 25 0 4 636 225 65 0 0 chr6 6813648 6813679 -142703358 + (CCA)n Simple_repeat Simple_repeat 3 33 0 4 636 21 82 0 0 chr6 6813905 6813954 -142703083 + GC_rich Low_complexity Low_complexity 1 49 0 4 636 285 29 0 0 chr6 6815576 6815610 -142701427 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 637 498 151 19 9 chr6 6817402 6817509 -142699528 + CT-rich Low_complexity Low_complexity 1 108 0 4 637 202 192 38 19 chr6 6817535 6817588 -142699449 + CT-rich Low_complexity Low_complexity 4 57 0 4 637 429 20 0 0 chr6 6817638 6817688 -142699349 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 637 531 0 0 0 chr6 6817688 6817747 -142699290 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 637 828 149 0 0 chr6 6818007 6818148 -142698889 + (GGA)n Simple_repeat Simple_repeat 2 142 0 4 637 444 19 0 0 chr6 6820766 6820819 -142696218 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 637 369 0 0 0 chr6 6820819 6820859 -142696178 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 637 261 0 0 0 chr6 6821716 6821745 -142695292 + (A)n Simple_repeat Simple_repeat 1 29 0 4 637 360 77 0 0 chr6 6822169 6822221 -142694816 + (CTG)n Simple_repeat Simple_repeat 3 54 0 4 637 201 74 0 0 chr6 6822237 6822264 -142694773 + (T)n Simple_repeat Simple_repeat 1 27 0 4 637 309 26 0 0 chr6 6823369 6823407 -142693630 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 637 474 33 0 0 chr6 6824822 6824882 -142692155 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 637 459 0 0 0 chr6 6824912 6824963 -142692074 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 637 180 0 0 0 chr6 6830345 6830365 -142686672 + (A)n Simple_repeat Simple_repeat 1 20 0 4 637 296 103 17 0 chr6 6831986 6832044 -142684993 + (GGA)n Simple_repeat Simple_repeat 1 59 0 4 637 305 234 23 86 chr6 6832168 6832388 -142684649 - RMER17A LTR ERVK -283 468 263 4 637 355 302 27 0 chr6 6834351 6834500 -142682537 + (TA)n Simple_repeat Simple_repeat 1 153 0 4 637 21 0 0 0 chr6 6835443 6835464 -142681573 + AT_rich Low_complexity Low_complexity 1 21 0 4 637 294 250 0 0 chr6 6835467 6835531 -142681506 - ID_B1 SINE B4 -5 219 156 4 637 217 247 47 123 chr6 6835531 6835573 -142681464 - B1F SINE Alu -5 144 47 4 637 492 128 0 0 chr6 6835851 6835929 -142681108 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 637 336 67 0 0 chr6 6835929 6835964 -142681073 - HAL1-3A_ME LINE L1 -848 2010 1976 4 637 197 0 71 0 chr6 6836097 6836125 -142680912 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 4 637 792 160 0 0 chr6 6836125 6836244 -142680793 - B1_Mus1 SINE Alu -13 135 17 4 637 333 0 0 0 chr6 6836257 6836294 -142680743 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 4 637 663 308 45 31 chr6 6837462 6837750 -142679287 + B4A SINE B4 1 292 0 4 637 476 185 25 19 chr6 6837760 6837920 -142679117 + (CA)n Simple_repeat Simple_repeat 1 161 0 4 637 3090 139 28 10 chr6 6838070 6838573 -142678464 - RLTR20A LTR ERVK -29 512 1 4 637 301 305 264 9 chr6 6838972 6839184 -142677853 + MER2 DNA MER2_type 2 267 -78 4 637 895 186 7 7 chr6 6840013 6840159 -142676878 - B1_Mus1 SINE Alu 0 148 3 4 637 491 282 42 94 chr6 6840187 6840379 -142676658 - B3 SINE B2 -34 182 1 4 637 854 202 85 15 chr6 6840740 6840941 -142676096 - B3 SINE B2 0 216 2 4 637 237 321 34 56 chr6 6841639 6841728 -142675309 - ID_B1 SINE B4 -39 185 99 4 637 231 36 0 0 chr6 6841789 6841817 -142675220 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 4 637 324 0 0 0 chr6 6841817 6841853 -142675184 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 637 700 206 76 0 chr6 6841853 6841984 -142675053 - B1_Mur4 SINE Alu -9 141 1 4 637 512 263 26 9 chr6 6842011 6842126 -142674911 - PB1D10 SINE Alu 0 117 1 4 637 661 255 114 51 chr6 6842264 6842537 -142674500 + B4A SINE B4 3 292 0 4 637 264 333 40 47 chr6 6843020 6843037 -142674000 + ID_B1 SINE B4 72 218 -6 4 637 510 264 53 15 chr6 6843037 6843168 -142673869 + B1_Mur3 SINE Alu 8 143 -6 4 637 239 255 0 0 chr6 6843170 6843217 -142673820 + polypurine Low_complexity Low_complexity 1 47 0 4 637 1043 272 35 3 chr6 6843312 6843626 -142673411 + L1MA6 LINE L1 5977 6300 0 4 637 528 136 0 0 chr6 6845649 6845737 -142671300 + (TCCC)n Simple_repeat Simple_repeat 2 89 0 4 637 620 309 0 19 chr6 6845744 6845899 -142671138 - RSINE1 SINE B4 -12 153 2 4 637 609 321 74 60 chr6 6846735 6847020 -142670017 - B4 SINE B4 -1 291 3 4 637 262 293 36 24 chr6 6847461 6847545 -142669492 - LTR33B LTR ERVL -34 469 385 4 637 231 36 0 0 chr6 6847708 6847736 -142669301 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 637 226 194 53 53 chr6 6848013 6848089 -142668948 + L2c LINE L2 3073 3148 -239 4 637 1863 214 49 13 chr6 6848588 6848977 -142668060 - MTD LTR MaLR -16 403 1 4 637 361 249 54 126 chr6 6848977 6849029 -142668008 - MTD-int LTR MaLR 0 1258 1214 4 637 1433 65 22 0 chr6 6849029 6849213 -142667824 - B2_Mm2 SINE B2 -6 189 2 4 637 668 268 86 82 chr6 6849213 6849657 -142667380 - MTD-int LTR MaLR -45 1213 814 4 637 278 323 107 30 chr6 6849841 6849972 -142667065 + RSINE1 SINE B4 25 165 0 4 637 402 101 0 0 chr6 6849979 6850048 -142666989 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 637 180 0 0 0 chr6 6850049 6850069 -142666968 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 637 444 296 91 91 chr6 6850423 6850876 -142666161 - MLT1E2 LTR MaLR -120 507 1 4 637 1022 152 0 0 chr6 6851176 6851321 -142665716 - B1_Mur4 SINE Alu -1 149 5 4 637 450 53 0 0 chr6 6851554 6851611 -142665426 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 637 257 344 66 0 chr6 6851949 6852071 -142664966 + MLT1J1 LTR MaLR 4 133 -311 4 637 200 200 20 0 chr6 6852244 6852294 -142664743 + CT-rich Low_complexity Low_complexity 2 52 0 4 637 906 201 0 0 chr6 6852398 6852542 -142664495 - B1_Mur2 SINE Alu -4 145 2 4 637 530 305 14 14 chr6 6852579 6852722 -142664315 + B1F SINE Alu 1 143 -6 4 637 301 224 48 72 chr6 6853560 6853685 -142663352 + Lx8 LINE L1 7352 7473 0 4 637 440 318 17 86 chr6 6853974 6854208 -142662829 + LTR81A LTR ERV1? 1029 1270 -123 4 637 468 0 0 0 chr6 6854355 6854407 -142662630 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 637 1061 275 172 11 chr6 6854488 6854947 -142662090 - MT2A LTR ERVL 0 533 1 4 637 207 0 0 0 chr6 6855118 6855141 -142661896 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 4 637 567 137 128 64 chr6 6855141 6855266 -142661771 - B1_Mus1 SINE Alu -13 135 3 4 637 925 122 14 0 chr6 6856037 6856176 -142660861 - B1_Mur4 SINE Alu -1 149 9 4 637 598 305 0 0 chr6 6856483 6856624 -142660413 - MTE2b LTR MaLR -214 165 25 4 637 702 313 46 14 chr6 6856770 6857052 -142659985 + B4A SINE B4 1 291 -1 4 637 1380 51 0 0 chr6 6857097 6857274 -142659763 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 4 637 747 308 97 11 chr6 6857327 6857688 -142659349 + L1MB4 LINE L1 5788 6179 -1 4 637 370 308 77 0 chr6 6857781 6857885 -142659152 + B1F1 SINE Alu 6 117 -3 4 637 307 278 0 14 chr6 6857905 6857978 -142659059 + BC1_Mm scRNA scRNA 14 85 -67 4 637 230 290 28 57 chr6 6858126 6858232 -142658805 + L2c LINE L2 3052 3154 -233 4 637 545 141 10 0 chr6 6858369 6858468 -142658569 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 637 328 330 51 80 chr6 6858666 6858903 -142658134 - MER106A DNA MER1_type -1 235 6 4 637 286 272 31 33 chr6 6859530 6859628 -142657409 + B1F SINE Alu 15 107 -13 4 637 5092 60 24 8 chr6 6859977 6860602 -142656435 + L1Md_F2 LINE L1 5947 6581 -1 4 637 562 231 99 8 chr6 6860727 6860858 -142656179 + B1_Mur1 SINE Alu 1 143 -6 5 637 276 100 0 0 chr6 6860863 6860903 -142656134 + (AGGGGG)n Simple_repeat Simple_repeat 5 44 0 5 637 483 291 99 41 chr6 6860907 6861079 -142655958 + B3 SINE B2 29 210 -6 5 637 670 153 93 58 chr6 6861088 6861227 -142655810 + B1_Mur2 SINE Alu 1 144 -5 5 637 261 211 0 0 chr6 6861243 6861300 -142655737 + GA-rich Low_complexity Low_complexity 1 57 0 5 637 287 308 77 77 chr6 6862056 6862239 -142654798 + RMER15 LTR ERVL 3 185 -390 5 637 309 330 25 8 chr6 6862313 6862432 -142654605 + RMER15 LTR ERVL 435 555 -20 5 637 729 155 0 0 chr6 6862535 6862664 -142654373 + (TA)n Simple_repeat Simple_repeat 2 130 0 5 637 23 0 0 0 chr6 6862798 6862821 -142654216 + AT_rich Low_complexity Low_complexity 1 23 0 5 637 812 263 0 66 chr6 6862832 6863060 -142653977 + B3 SINE B2 2 214 -2 5 637 344 138 15 0 chr6 6863098 6863163 -142653874 + (CAGA)n Simple_repeat Simple_repeat 3 68 0 5 637 560 209 9 9 chr6 6863186 6863302 -142653735 + MER58B DNA MER1_type 223 338 -3 5 637 1248 49 18 12 chr6 6863533 6863699 -142653338 - L1Md_F3 LINE L1 0 6584 6418 5 637 751 206 0 35 chr6 6863699 6863840 -142653197 + B1_Mus2 SINE Alu 11 146 -1 5 637 426 261 0 0 chr6 6863936 6864028 -142653009 - RSINE1 SINE B4 -62 103 12 5 637 466 301 252 23 chr6 6864049 6864351 -142652686 + MTE2b LTR MaLR 1 371 -8 5 637 29 28 0 0 chr6 6864554 6864590 -142652447 + AT_rich Low_complexity Low_complexity 1 36 0 5 637 231 289 193 0 chr6 6864914 6865028 -142652009 + B1F SINE Alu 2 137 -12 5 637 641 320 26 15 chr6 6866672 6866974 -142650063 + L3b LINE CR1 3964 4280 -228 5 637 387 0 0 0 chr6 6867312 6867355 -142649682 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 637 915 133 31 0 chr6 6867387 6867515 -142649522 - B1_Mus1 SINE Alu -12 136 5 5 637 1099 247 80 28 chr6 6867530 6867917 -142649120 + Lx8 LINE L1 7056 7462 -11 5 637 25 0 0 0 chr6 6867965 6867990 -142649047 + AT_rich Low_complexity Low_complexity 1 25 0 5 637 976 210 86 10 chr6 6867995 6868192 -142648845 + B3 SINE B2 5 216 0 5 637 397 261 70 0 chr6 6868203 6868318 -142648719 + L1MA6 LINE L1 6164 6286 -14 5 637 1878 213 93 2 chr6 6869690 6870099 -142646938 - RMER1B Other Other -50 1016 571 5 637 698 279 33 22 chr6 6872077 6872260 -142644777 - B3 SINE B2 0 216 32 5 637 306 73 0 0 chr6 6872452 6872493 -142644544 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 637 529 239 17 0 chr6 6872497 6872614 -142644423 - RSINE1 SINE B4 -43 122 4 5 637 613 283 58 39 chr6 6872657 6872914 -142644123 - MER45B DNA Tip100 -2 1038 777 5 637 498 398 99 34 chr6 6873160 6873657 -142643380 - MER45C DNA Tip100 -374 579 51 5 637 548 303 12 31 chr6 6873818 6873978 -142643059 + B4 SINE B4 50 206 -86 5 637 532 194 16 0 chr6 6873984 6874108 -142642929 + CT-rich Low_complexity Low_complexity 2 127 0 5 637 1370 81 0 0 chr6 6874116 6874277 -142642760 - U1 snRNA snRNA -2 163 3 5 637 735 242 7 32 chr6 6874306 6874460 -142642577 + RSINE1 SINE B4 12 161 -4 5 637 286 219 14 14 chr6 6874473 6874547 -142642490 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 637 490 157 0 19 chr6 6874552 6874656 -142642381 + (TA)n Simple_repeat Simple_repeat 1 102 0 5 637 252 231 0 19 chr6 6874737 6874790 -142642247 + B4A SINE B4 239 290 -2 5 637 285 151 0 0 chr6 6875448 6875501 -142641536 + CT-rich Low_complexity Low_complexity 1 53 0 5 637 308 305 28 9 chr6 6875675 6875781 -142641256 + PB1D10 SINE Alu 3 110 -7 5 637 4124 49 19 0 chr6 6875912 6876378 -142640659 - MT2C_Mm LTR ERVL 0 475 1 5 637 496 290 14 21 chr6 6877066 6877207 -142639830 + MIR3 SINE MIR 36 175 -33 5 637 218 325 128 52 chr6 6878328 6878500 -142638537 - B4A SINE B4 -56 236 52 5 637 551 214 251 18 chr6 6879833 6879858 -142637179 - B3 SINE B2 -5 211 187 5 637 429 20 0 0 chr6 6879858 6879908 -142637129 + (TATG)n Simple_repeat Simple_repeat 1 50 0 5 637 551 214 251 18 chr6 6879908 6880053 -142636984 - B3 SINE B2 -30 186 1 5 637 259 229 117 78 chr6 6880217 6880298 -142636739 - MLT1H1 LTR MaLR -1 554 470 5 637 212 0 36 0 chr6 6880298 6880326 -142636711 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 637 259 229 117 78 chr6 6880326 6880372 -142636665 - MLT1H1 LTR MaLR -86 469 423 5 637 1194 218 0 5 chr6 6881286 6881498 -142635539 - B3 SINE B2 -5 211 1 5 637 360 0 0 0 chr6 6881515 6881555 -142635482 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 637 318 294 94 151 chr6 6881590 6881782 -142635255 - B4 SINE B4 -58 234 54 5 637 186 43 0 0 chr6 6882236 6882259 -142634778 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 5 637 294 279 23 0 chr6 6883503 6883589 -142633448 + MER5A1 DNA MER1_type 76 163 -3 5 637 365 81 0 16 chr6 6883939 6884002 -142633035 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 637 589 225 75 0 chr6 6884040 6884160 -142632877 - B1_Mus2 SINE Alu -6 141 13 5 637 28 29 0 0 chr6 6884213 6884248 -142632789 + AT_rich Low_complexity Low_complexity 1 35 0 5 637 939 133 52 0 chr6 6884248 6884383 -142632654 - B1_Mus2 SINE Alu -3 144 3 5 637 610 316 79 19 chr6 6884385 6884601 -142632436 - B4A SINE B4 -62 230 2 5 637 378 289 61 30 chr6 6884783 6884915 -142632122 + Lx8 LINE L1 7239 7374 -99 5 637 3443 170 3 11 chr6 6884967 6885622 -142631415 + L1_Mur2 LINE L1 3262 3911 -1966 5 637 15131 71 8 14 chr6 6885617 6886280 -142630757 - L1VL4 LINE L1 -611 2948 2305 5 637 3646 29 5 5 chr6 6886280 6886693 -142630344 - L1Md_F2 LINE L1 -2 6580 6168 5 637 15131 84 9 10 chr6 6886693 6888833 -142628204 - L1VL4 LINE L1 -1255 2304 149 5 637 498 247 29 0 chr6 6888815 6888948 -142628089 - L1VL4 LINE L1 -5996 306 190 5 637 394 335 31 31 chr6 6888934 6889125 -142627912 - Lx8 LINE L1 -243 7230 7040 5 637 544 274 64 19 chr6 6889247 6889403 -142627634 + RSINE1 SINE B4 1 163 -2 5 637 318 148 0 0 chr6 6889424 6889478 -142627559 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 5 637 228 271 0 0 chr6 6889487 6889535 -142627502 + B3 SINE B2 27 74 -142 5 637 1190 223 36 24 chr6 6889537 6889868 -142627169 - Lx7 LINE L1 -1573 6123 5789 5 637 519 41 13 26 chr6 6889872 6889948 -142627089 - B1_Mur3 SINE Alu 0 149 75 5 637 3071 152 87 53 chr6 6889949 6890884 -142626153 - L1_Mur3 LINE L1 -4188 1692 703 5 637 270 81 0 0 chr6 6891332 6891369 -142625668 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 5 637 878 131 110 7 chr6 6891369 6891515 -142625522 - B2_Mm2 SINE B2 -34 161 1 5 637 488 290 131 22 chr6 6891828 6892057 -142624980 + L1M3c LINE L1 1 254 -5887 5 637 2538 199 61 2 chr6 6892140 6892633 -142624404 - RLTR28 LTR ERVL -2 522 1 5 637 183 243 0 0 chr6 6893582 6893619 -142623418 - MIR SINE MIR -217 45 9 5 637 264 233 40 40 chr6 6893918 6893994 -142623043 - ID4 SINE ID -3 80 5 5 637 1141 72 129 29 chr6 6893998 6894169 -142622868 - B2_Mm2 SINE B2 -7 188 1 5 637 225 0 0 0 chr6 6894191 6894216 -142622821 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 637 417 302 18 28 chr6 6894222 6894331 -142622706 - PB1D10 SINE Alu -8 109 2 5 637 216 333 35 69 chr6 6894253 6894340 -142622697 - B4A SINE B4 -129 163 80 5 637 25 31 0 0 chr6 6894343 6894375 -142622662 + AT_rich Low_complexity Low_complexity 1 32 0 5 637 858 185 16 21 chr6 6894473 6894766 -142622271 + ORR1D1 LTR MaLR 24 374 0 5 637 573 259 0 0 chr6 6894820 6894932 -142622105 + B3A SINE B2 9 120 -78 5 637 344 131 66 0 chr6 6894968 6895029 -142622008 - MurSatRep1 Unknown Unknown -624 1513 1449 5 637 442 141 75 11 chr6 6895302 6895395 -142621642 - MurSatRep1 Unknown Unknown -674 1463 1365 5 637 1924 142 117 12 chr6 6895398 6895520 -142621517 - RMER1A Other Other 0 1030 911 5 637 327 25 0 0 chr6 6895520 6895560 -142621477 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 637 1924 142 117 12 chr6 6895560 6895779 -142621258 - RMER1A Other Other -120 910 653 5 637 941 150 0 0 chr6 6896361 6896494 -142620543 + B1_Mus1 SINE Alu 5 137 -11 5 637 3412 144 18 11 chr6 6896494 6897040 -142619997 + Lx3B LINE L1 6417 6966 -7 5 637 247 0 79 0 chr6 6897040 6897078 -142619959 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 637 24 53 0 0 chr6 6897116 6897154 -142619883 + AT_rich Low_complexity Low_complexity 1 38 0 5 637 575 294 56 51 chr6 6897542 6897959 -142619078 + RLTR12B LTR ERVK 1 308 -220 5 637 320 131 66 0 chr6 6898638 6898699 -142618338 - RMER1C Other Other -2 1340 1276 5 637 1737 158 76 30 chr6 6898699 6899134 -142617903 + RMER17C LTR ERVK 1 441 -517 5 637 342 0 0 0 chr6 6899171 6899209 -142617828 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 637 672 13 0 0 chr6 6899223 6899300 -142617737 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 637 824 93 0 17 chr6 6899308 6899428 -142617609 - RMER1C Other Other -176 1166 1049 5 637 483 18 0 0 chr6 6899444 6899500 -142617537 + (CTA)n Simple_repeat Simple_repeat 1 56 0 5 637 8266 132 34 8 chr6 6899502 6900846 -142616191 - Lx3C LINE L1 -11 6965 5587 5 637 1470 38 48 21 chr6 6900874 6901061 -142615976 - B2_Mm2 SINE B2 -3 192 1 5 637 1281 264 10 78 chr6 6901067 6901466 -142615571 - RMER1C Other Other -295 1047 676 5 637 317 312 9 52 chr6 6901506 6901621 -142615416 - RMER1C Other Other -1201 141 32 5 637 762 205 76 194 chr6 6901755 6902111 -142614926 - RMER1B Other Other -187 879 595 5 637 3575 76 4 7 chr6 6902180 6902632 -142614405 - L1Md_F2 LINE L1 -14 6568 6118 5 637 1103 211 19 5 chr6 6902717 6902926 -142614111 - B3 SINE B2 -3 213 2 5 637 262 289 213 20 chr6 6904536 6904780 -142612257 - L2 LINE L2 -563 2856 2566 5 637 4278 53 13 30 chr6 6904863 6905391 -142611646 - MURVY-LTR LTR ERV1 0 519 1 6 637 246 105 0 0 chr6 6906808 6906846 -142610191 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 637 504 246 24 8 chr6 6906847 6906970 -142610067 - RSINE1 SINE B4 -38 127 3 6 637 478 161 23 0 chr6 6907547 6907634 -142609403 - B1_Mus2 SINE Alu -4 143 55 6 637 510 270 101 24 chr6 6907936 6908183 -142608854 - L1MD3 LINE L1 0 7995 7730 6 637 189 74 0 0 chr6 6908184 6908211 -142608826 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 637 902 53 0 0 chr6 6908211 6908324 -142608713 - B1_Mm SINE Alu -9 138 26 6 637 377 229 124 18 chr6 6908336 6908505 -142608532 - L1MD3 LINE L1 -272 7610 7424 6 637 268 303 43 52 chr6 6908820 6908935 -142608102 + PB1D10 SINE Alu 1 114 -3 6 637 196 158 35 0 chr6 6908994 6909051 -142607986 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 637 296 247 65 0 chr6 6909224 6909317 -142607720 - L1MD3 LINE L1 -574 7308 7210 6 637 5321 40 0 0 chr6 6909498 6910092 -142606945 - L1Md_T LINE L1 0 6582 5989 6 637 834 56 0 0 chr6 6910300 6910408 -142606629 - B1_Mm SINE Alu 0 147 40 6 637 910 182 7 26 chr6 6910748 6910900 -142606137 + B1_Mur4 SINE Alu 2 150 0 6 637 351 216 16 126 chr6 6913905 6914032 -142603005 + MT2B LTR ERVL 144 256 -345 6 637 621 197 34 8 chr6 6913939 6914057 -142602980 + B1_Mus2 SINE Alu 6 126 -21 6 637 606 289 114 39 chr6 6914782 6915063 -142601974 - MER46C DNA MER2_type -35 303 2 6 637 189 0 0 0 chr6 6915909 6915930 -142601107 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 637 7708 62 0 8 chr6 6917253 6918502 -142598535 - L1Md_F2 LINE L1 0 6582 5375 6 637 7445 200 25 21 chr6 6918729 6919261 -142597776 - Lx5 LINE L1 -4 7046 6517 6 637 2185 120 11 79 chr6 6919261 6919614 -142597423 + ORR1A4 LTR MaLR 1 329 0 6 637 7445 200 25 21 chr6 6919614 6920032 -142597005 - Lx5 LINE L1 -534 6516 6115 6 637 690 47 0 0 chr6 6920032 6920118 -142596919 + (TC)n Simple_repeat Simple_repeat 1 86 0 6 637 9275 139 45 35 chr6 6920118 6921951 -142595086 - Lx5 LINE L1 -936 6114 4238 6 637 1221 74 6 0 chr6 6921952 6922115 -142594922 - ORR1A3 LTR MaLR -8 318 155 6 637 7903 58 13 7 chr6 6922125 6922524 -142594513 - L1Md_F2 LINE L1 0 6582 6174 6 637 3664 50 28 5 chr6 6922524 6922950 -142594087 + RLTR10C LTR ERVK 1 436 0 6 637 17049 65 6 2 chr6 6922950 6925418 -142591619 - L1Md_F2 LINE L1 -409 6173 3705 6 637 198 0 0 0 chr6 6925418 6925440 -142591597 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 637 35486 75 3 6 chr6 6925451 6931398 -142585639 - L1Md_F2 LINE L1 -2 6580 659 6 637 1003 185 33 14 chr6 6931398 6931611 -142585426 - ORR1A3 LTR MaLR -114 260 1 6 637 8351 161 17 22 chr6 6931611 6933270 -142583767 - L1_Mur2 LINE L1 -1632 4245 2595 6 637 38768 31 2 0 chr6 6933270 6940061 -142576976 - L1Md_T LINE L1 0 6585 1 6 637 4217 163 25 22 chr6 6940064 6940881 -142576156 - L1_Mur2 LINE L1 -3270 2607 1789 6 637 287 206 0 0 chr6 6940877 6940940 -142576097 - MusHAL1 LINE L1 -2256 456 394 6 637 22 0 0 0 chr6 6940940 6940962 -142576075 + AT_rich Low_complexity Low_complexity 1 22 0 6 637 24903 25 2 0 chr6 6940991 6944552 -142572485 - L1Md_T LINE L1 0 6582 3013 6 637 1447 151 169 0 chr6 6944554 6944858 -142572179 - L1_Mur2 LINE L1 -4264 1613 1271 6 637 360 43 0 0 chr6 6944858 6944904 -142572133 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 6 637 1447 178 136 3 chr6 6944904 6945020 -142572017 - L1_Mur2 LINE L1 -5816 1270 1134 6 637 1508 43 16 11 chr6 6945039 6945228 -142571809 + B2_Mm1a SINE B2 2 191 -2 6 637 310 261 22 22 chr6 6945410 6945500 -142571537 + L1MD LINE L1 5410 5499 -860 6 637 1043 50 0 113 chr6 6945537 6945670 -142571367 + polypurine Low_complexity Low_complexity 1 110 0 6 637 1378 34 11 0 chr6 6945670 6945846 -142571191 + (GGA)n Simple_repeat Simple_repeat 3 180 0 6 637 1043 50 0 113 chr6 6945846 6945915 -142571122 + polypurine Low_complexity Low_complexity 111 179 0 6 637 457 168 30 0 chr6 6945921 6946022 -142571015 + GA-rich Low_complexity Low_complexity 2 105 0 6 637 603 256 21 20 chr6 6946029 6946173 -142570864 + B1_Mur1 SINE Alu 3 140 -9 6 637 468 0 0 0 chr6 6946178 6946230 -142570807 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 6 637 538 200 0 0 chr6 6946231 6946326 -142570711 - B1_Mur2 SINE Alu -47 102 8 6 637 270 0 0 0 chr6 6946457 6946487 -142570550 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6 637 288 313 48 30 chr6 6946566 6946602 -142570435 - Tigger2b DNA MER2_type -2 724 692 6 79 2950 37 53 8 chr6 6946602 6946981 -142570056 - MTA_Mm LTR MaLR 0 396 1 6 638 288 313 48 30 chr6 6946981 6947112 -142569925 - Tigger2b DNA MER2_type -35 691 554 6 638 219 167 23 23 chr6 6947121 6947164 -142569873 + B1F2 SINE Alu 21 63 -86 6 638 490 209 0 0 chr6 6947218 6947309 -142569728 + 5S rRNA rRNA 1 91 -30 6 638 1044 154 94 5 chr6 6948203 6948405 -142568632 - URR1A DNA MER1_type -4 222 3 6 638 337 235 246 43 chr6 6948527 6948714 -142568323 + L1MD2 LINE L1 4498 4722 -1424 6 638 312 279 11 11 chr6 6948717 6948804 -142568233 + L1MD2 LINE L1 5413 5499 -860 6 638 481 251 172 35 chr6 6948826 6949082 -142567955 + L1MD2 LINE L1 5592 5882 -477 6 638 538 281 85 45 chr6 6949148 6949349 -142567688 - B3 SINE B2 0 216 8 6 638 8546 92 9 16 chr6 6949365 6951478 -142565559 - L1_Mus3 LINE L1 0 6638 4528 6 638 549 189 37 0 chr6 6951609 6951734 -142565303 + B3 SINE B2 1 137 -58 6 638 498 46 0 0 chr6 6951754 6951819 -142565218 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 638 398 178 0 118 chr6 6951949 6952051 -142564986 + MT2B LTR ERVL 168 257 -344 6 638 934 65 16 0 chr6 6951961 6952069 -142564968 + B1_Mm SINE Alu 13 137 -10 6 638 277 233 40 91 chr6 6952069 6952084 -142564953 - RLTR25A LTR ERVK -487 616 602 6 638 191 36 0 35 chr6 6952084 6952113 -142564924 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 638 277 233 40 91 chr6 6952113 6952196 -142564841 - RLTR25A LTR ERVK -502 601 523 6 638 839 62 0 26 chr6 6952126 6952242 -142564795 - B1_Mus2 SINE Alu -34 113 1 6 638 622 217 36 65 chr6 6952242 6952301 -142564736 - ID SINE ID -144 80 27 6 638 6290 28 0 1 chr6 6952456 6953198 -142563839 + L1Md_F3 LINE L1 5841 6581 -3 6 638 277 143 130 87 chr6 6953412 6953504 -142563533 - L1Md_F2 LINE L1 -2 6580 6485 6 638 2299 84 3 0 chr6 6953621 6953932 -142563105 + L1_Mus1 LINE L1 6256 6567 0 6 638 240 298 11 67 chr6 6954066 6954156 -142562881 - L2a LINE L2 0 3426 3342 6 638 350 333 92 0 chr6 6954165 6954285 -142562752 + RSINE1 SINE B4 2 132 -33 6 638 558 75 0 0 chr6 6954288 6954368 -142562669 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 638 499 307 164 22 chr6 6954427 6954610 -142562427 - B3A SINE B2 0 216 8 6 638 1306 156 256 0 chr6 6955008 6955309 -142561728 - ORR1C1 LTR MaLR 0 378 1 6 638 720 297 199 39 chr6 6955451 6956098 -142560939 - BLACKJACK DNA AcHobo -86 2858 2108 6 638 3432 34 0 128 chr6 6956154 6956654 -142560383 - RLTR10C LTR ERVK 0 436 1 6 638 7635 35 2 4 chr6 6956654 6957592 -142559445 - MMERVK10C-int LTR ERVK 0 7581 6646 6 638 8263 36 2 4 chr6 6957578 6958601 -142558436 - MMERVK10C-int LTR ERVK -1771 5810 4790 6 638 23090 42 0 1 chr6 6958594 6961470 -142555567 - MMERVK10C-int LTR ERVK -3838 3743 870 6 638 2489 95 53 3 chr6 6961468 6961848 -142555189 - MMERVK10C-int LTR ERVK -7182 399 1 6 638 3268 42 16 130 chr6 6961848 6962340 -142554697 - RLTR10C LTR ERVK 0 436 1 6 638 467 262 34 14 chr6 6962429 6962576 -142554461 - BLACKJACK DNA AcHobo -1042 1902 1753 6 638 13232 51 12 3 chr6 6962624 6965120 -142551917 - L1Md_F2 LINE L1 0 6582 4065 6 638 343 305 54 8 chr6 6965201 6965330 -142551707 - BLACKJACK DNA AcHobo -1381 1563 1429 6 638 623 218 75 66 chr6 6965337 6965563 -142551474 - BLACKJACK DNA AcHobo -1678 1266 1039 6 638 2716 189 26 61 chr6 6965627 6966203 -142550834 + RMER15 LTR ERVL 20 575 0 6 638 562 282 105 34 chr6 6966234 6966598 -142550439 - BLACKJACK DNA AcHobo -1977 967 534 6 638 1282 151 14 5 chr6 6966647 6966867 -142550170 + URR1B DNA MER1_type 1 222 -3 6 638 458 288 152 13 chr6 6967425 6967900 -142549137 - L1MD LINE L1 -744 5402 4862 6 638 782 131 0 14 chr6 6968702 6968841 -142548196 - L1_Mur2 LINE L1 -594 5283 5147 6 638 17344 168 46 14 chr6 6968883 6970525 -142546512 - Lx2B LINE L1 -33 6967 5294 6 638 1059 62 7 33 chr6 6970525 6970676 -142546361 - B1_Mus2 SINE Alu 0 147 1 6 638 17344 158 38 25 chr6 6970676 6973628 -142543409 - Lx2B LINE L1 -584 5293 2262 6 638 2018 83 31 16 chr6 6973679 6973996 -142543041 - RLTRETN_Mm LTR ERVK 0 322 1 6 638 12502 73 23 18 chr6 6973996 6976168 -142540869 - MMETn-int LTR ERVK -203 7203 3219 6 638 6705 22 0 0 chr6 6976152 6976960 -142540077 - MMETn-int LTR ERVK -3857 987 180 6 638 2754 48 0 0 chr6 6976931 6977285 -142539752 - ETnERV-int LTR ERVK -2960 354 1 6 638 2018 83 31 16 chr6 6977285 6977602 -142539435 - RLTRETN_Mm LTR ERVK 0 322 1 6 638 351 328 70 105 chr6 6977663 6978034 -142539003 - L1M4 LINE L1 -5866 676 319 6 638 267 284 100 37 chr6 6978119 6978309 -142538728 - L1M4 LINE L1 -6336 206 5 6 638 1236 128 21 0 chr6 6978567 6978754 -142538283 + URR1B DNA MER1_type 35 225 0 6 638 631 233 219 12 chr6 6978851 6979107 -142537930 - RMER5 LTR ERV1 -155 379 71 6 638 919 118 0 13 chr6 6979143 6979298 -142537739 + (TCCC)n Simple_repeat Simple_repeat 2 154 0 6 638 761 193 30 0 chr6 6979537 6979672 -142537365 + B1_Mur1 SINE Alu 6 144 -5 6 638 1516 108 193 47 chr6 6979885 6980180 -142536857 + RMER4A LTR ERVK 6 345 -121 6 638 631 35 23 0 chr6 6980180 6980266 -142536771 + (TC)n Simple_repeat Simple_repeat 1 88 0 6 638 594 166 144 128 chr6 6980266 6980384 -142536653 + RMER4A LTR ERVK 346 463 -3 6 638 4686 39 0 0 chr6 6980440 6980998 -142536039 - L1Md_T LINE L1 -1 6581 6024 6 638 300 48 0 0 chr6 6980998 6981040 -142535997 + L1_Mm LINE L1 4244 4285 -1598 6 638 241 192 66 40 chr6 6981585 6981661 -142535376 + L1ME2z LINE L1 5857 5934 -510 6 638 509 235 162 18 chr6 6981666 6981999 -142535038 + L1MB1 LINE L1 4224 4604 -1536 6 638 784 280 20 31 chr6 6982002 6982162 -142534875 + B3 SINE B2 1 163 -53 6 638 210 71 0 0 chr6 6982162 6982190 -142534847 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 638 784 280 20 31 chr6 6982190 6982224 -142534813 + B3 SINE B2 164 193 -23 6 638 1065 239 132 76 chr6 6982234 6983126 -142533911 + L1MB1 LINE L1 4609 5577 -597 6 638 352 301 64 0 chr6 6983311 6983484 -142533553 + L1MB1 LINE L1 5817 6000 -189 6 638 204 40 0 0 chr6 6984234 6984259 -142532778 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 6 638 350 127 0 0 chr6 6984284 6984339 -142532698 - B2_Mm2 SINE B2 -94 101 47 6 638 1273 92 35 0 chr6 6984417 6984590 -142532447 - B2_Mm1t SINE B2 -14 179 1 6 638 408 189 226 0 chr6 6984696 6984802 -142532235 - B3 SINE B2 -3 213 84 6 638 273 232 126 60 chr6 6984919 6985070 -142531967 - L1M3 LINE L1 -2373 3767 3607 6 638 621 279 10 41 chr6 6985369 6985563 -142531474 + B2_Mm2 SINE B2 8 195 0 6 638 248 23 0 0 chr6 6985700 6985743 -142531294 + Lx LINE L1 6612 6654 0 6 638 433 278 62 23 chr6 6986031 6986160 -142530877 + B3 SINE B2 79 212 -4 6 638 864 141 8 0 chr6 6986708 6986836 -142530201 - B1_Mus2 SINE Alu -18 129 1 6 638 300 27 0 0 chr6 6986873 6986910 -142530127 + (T)n Simple_repeat Simple_repeat 1 37 0 6 638 434 290 85 57 chr6 6987447 6987659 -142529378 + MER20 DNA MER1_type 2 219 0 7 638 258 188 0 0 chr6 6987811 6987859 -142529178 + RLTR19C LTR ERVK 18 65 -441 7 638 1029 236 46 32 chr6 6987860 6988140 -142528897 + RLTR19C LTR ERVK 223 506 0 7 638 845 274 69 9 chr6 6989707 6989924 -142527113 + B4A SINE B4 4 233 -59 7 638 960 156 226 5 chr6 6989952 6990164 -142526873 - RLTR18B LTR ERVK -251 261 3 7 638 204 0 26 53 chr6 6990484 6990522 -142526515 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 7 638 2368 152 101 2 chr6 6991669 6992136 -142524901 - RMER1C Other Other -8 1334 822 7 638 915 349 87 14 chr6 6992194 6992630 -142524407 + MER70B LTR ERVL 5 472 -106 7 638 318 343 89 11 chr6 6992673 6992853 -142524184 + L1MEg LINE L1 1440 1645 -4521 7 638 241 299 33 33 chr6 6993291 6993381 -142523656 + MLT1A LTR MaLR 83 172 -202 7 638 574 233 45 37 chr6 6994043 6994177 -142522860 + ID_B1 SINE B4 82 216 -8 7 638 1018 22 29 0 chr6 6994185 6994321 -142522716 + L1Md_F3 LINE L1 6442 6581 -3 7 638 419 254 179 28 chr6 6994785 6995138 -142521899 + L1MEg LINE L1 3685 4090 -2056 7 638 5122 207 96 11 chr6 6995144 6995416 -142521621 - Lx7 LINE L1 -679 7017 6742 7 638 1867 171 19 128 chr6 6995416 6995899 -142521138 - RLTR23 LTR ERV1 0 430 1 7 638 5122 207 96 11 chr6 6995899 6996428 -142520609 - Lx7 LINE L1 -955 6741 6191 7 638 432 0 0 0 chr6 6996428 6996476 -142520561 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 638 11916 175 86 40 chr6 6996476 6997934 -142519103 - Lx7 LINE L1 -1506 6190 4625 7 638 207 0 0 0 chr6 6997934 6997957 -142519080 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 638 11916 168 83 47 chr6 6997957 6999530 -142517507 - Lx7 LINE L1 -1256 4624 2997 7 638 546 16 0 0 chr6 6999530 6999593 -142517444 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 7 638 11916 168 83 47 chr6 6999593 6999858 -142517179 - Lx7 LINE L1 -2884 2996 2733 7 638 782 128 7 35 chr6 6999855 7000000 -142517037 + Lx6 LINE L1 6290 6430 -1030 7 638 4826 200 58 23 chr6 7000000 7000839 -142516198 + Lx6 LINE L1 6431 7298 -162 1 638 181 0 69 0 chr6 7000839 7000868 -142516169 + (TTATA)n Simple_repeat Simple_repeat 2 32 0 2 638 4826 200 58 23 chr6 7000868 7001020 -142516017 + Lx6 LINE L1 7299 7456 -4 1 638 27 29 0 0 chr6 7001765 7001799 -142515238 + AT_rich Low_complexity Low_complexity 1 34 0 3 638 507 33 0 0 chr6 7001858 7001919 -142515118 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 638 924 272 181 7 chr6 7002311 7002614 -142514423 + MTD LTR MaLR 1 356 -63 5 638 1174 141 0 20 chr6 7002618 7002814 -142514223 + L1_Mur2 LINE L1 2068 2259 -3618 6 638 486 200 103 17 chr6 7002907 7003024 -142514013 + RSINE1 SINE B4 3 129 -36 7 638 248 401 162 19 chr6 7003087 7003247 -142513790 - LTR41B LTR ERVL -317 441 259 8 638 424 340 70 11 chr6 7003270 7003457 -142513580 - LTR41B LTR ERVL -542 216 19 8 638 788 219 17 40 chr6 7004618 7004794 -142512243 - B3 SINE B2 -8 208 37 9 638 200 291 121 57 chr6 7004820 7004944 -142512093 + L2 LINE L2 2716 2847 -572 1 638 303 309 77 82 chr6 7005051 7005259 -142511778 - LTR50 LTR ERVL -102 693 487 1 638 35350 63 6 7 chr6 7005461 7007475 -142509562 - L1Md_F2 LINE L1 0 6582 4570 1 638 3715 15 5 0 chr6 7007475 7007869 -142509168 + MTA_Mm LTR MaLR 1 396 0 1 638 35350 87 6 16 chr6 7007869 7012014 -142505023 - L1Md_F2 LINE L1 -1314 4569 481 1 638 2089 136 52 3 chr6 7012040 7012350 -142504687 + ORR1A2 LTR MaLR 3 327 0 1 638 230 83 0 59 chr6 7012522 7012573 -142504464 + (A)n Simple_repeat Simple_repeat 1 48 0 1 638 288 0 0 0 chr6 7013245 7013277 -142503760 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 638 334 308 28 61 chr6 7013565 7013745 -142503292 - ERVL-B4-int LTR ERVL -1302 4412 4239 1 638 389 275 0 0 chr6 7013962 7014042 -142502995 + ID4_ SINE ID 2 81 -2 1 638 1883 133 46 97 chr6 7014109 7014482 -142502555 - ORR1B1 LTR MaLR 0 394 41 1 638 247 270 32 0 chr6 7015815 7015878 -142501159 - MLT1C LTR MaLR -52 415 351 2 638 261 57 0 0 chr6 7015911 7015946 -142501091 + (CAAAG)n Simple_repeat Simple_repeat 5 39 0 2 638 1170 60 0 0 chr6 7017227 7017378 -142499659 + (CATA)n Simple_repeat Simple_repeat 2 152 0 2 638 262 342 180 18 chr6 7018288 7018490 -142498547 + MIRb SINE MIR 34 262 0 2 638 251 250 0 16 chr6 7018579 7018640 -142498397 + GA-rich Low_complexity Low_complexity 3 62 0 2 638 274 204 14 7 chr6 7018643 7018781 -142498256 + (CAGAGA)n Simple_repeat Simple_repeat 4 142 0 2 638 228 259 11 129 chr6 7018782 7018875 -142498162 - LTR48 LTR ERV1 -634 153 72 2 638 498 346 88 55 chr6 7019822 7020256 -142496781 - MLT1C LTR MaLR 0 467 20 2 638 1616 220 144 60 chr6 7020607 7021071 -142495966 + RLTR33 LTR ERVK 143 645 -33 2 638 844 215 76 52 chr6 7021976 7022187 -142494850 - B3 SINE B2 0 216 1 2 638 26 0 0 0 chr6 7022536 7022562 -142494475 + AT_rich Low_complexity Low_complexity 1 26 0 3 638 297 0 0 0 chr6 7023461 7023494 -142493543 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 638 367 320 39 62 chr6 7023507 7023637 -142493400 - RSINE1 SINE B4 -36 129 3 3 638 266 211 111 14 chr6 7023689 7023761 -142493276 - MTEa LTR MaLR -3 376 298 3 638 185 219 0 0 chr6 7024068 7024100 -142492937 - L3 LINE CR1 -2845 1644 1613 3 638 32157 116 30 8 chr6 7024115 7026603 -142490434 + L1_Mus1 LINE L1 467 3016 -2867 3 638 294 29 0 0 chr6 7026603 7026638 -142490399 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 638 32157 102 10 8 chr6 7026638 7028086 -142488951 + L1_Mus1 LINE L1 3017 4468 -1415 3 638 2072 93 7 27 chr6 7028086 7028384 -142488653 + L1Md_F2 LINE L1 6291 6582 0 3 638 32157 102 10 8 chr6 7028384 7029125 -142487912 + L1_Mus1 LINE L1 4469 5209 -674 3 638 1674 148 11 86 chr6 7029125 7029473 -142487564 + RLTRETN_Mm LTR ERVK 1 322 0 3 638 32157 78 12 7 chr6 7029473 7030826 -142486211 + L1_Mus1 LINE L1 5210 6566 -1 3 638 335 356 114 59 chr6 7030902 7031209 -142485828 - MER77 LTR ERVL -14 593 270 3 638 466 281 8 38 chr6 7032139 7032272 -142484765 - B1_Mur4 SINE Alu -17 133 5 4 638 1129 264 26 58 chr6 7032299 7032810 -142484227 + Lx9 LINE L1 5622 6110 -1586 4 638 257 75 25 0 chr6 7032817 7032857 -142484180 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 4 638 1572 201 145 18 chr6 7032967 7033353 -142483684 + RMER10A LTR ERVL 4 438 -4 4 638 378 0 0 0 chr6 7033356 7033398 -142483639 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 638 867 263 39 26 chr6 7033421 7033655 -142483382 + Lx9 LINE L1 6358 6594 -1050 4 638 200 349 77 58 chr6 7034045 7034200 -142482837 - MIRb SINE MIR -47 221 64 4 638 251 380 19 32 chr6 7034518 7034673 -142482364 - MLT1A0 LTR MaLR -212 153 1 4 638 1582 197 244 73 chr6 7034806 7035260 -142481777 - MT2A LTR ERVL 0 533 2 4 638 595 211 16 31 chr6 7035521 7035648 -142481389 + RMER20B LTR ERVK 1 125 -502 4 638 25 0 0 0 chr6 7036559 7036584 -142480453 + AT_rich Low_complexity Low_complexity 1 25 0 4 638 22 0 0 0 chr6 7037037 7037059 -142479978 + AT_rich Low_complexity Low_complexity 1 22 0 5 638 238 296 118 34 chr6 7037950 7038069 -142478968 - MIRb SINE MIR -116 152 24 5 638 259 241 55 88 chr6 7038581 7038672 -142478365 - LTR33B LTR ERVL -350 153 66 5 638 552 202 118 24 chr6 7039261 7039388 -142477649 + ORR1B1 LTR MaLR 41 179 -215 5 638 427 283 95 21 chr6 7039383 7039591 -142477446 - RLTR9A LTR ERVK -24 385 153 5 638 298 50 25 0 chr6 7039642 7039682 -142477355 - RLTR9A LTR ERVK -327 41 1 5 638 1010 179 55 16 chr6 7039682 7039890 -142477147 + ORR1B1 LTR MaLR 165 361 -13 5 638 3011 69 3 0 chr6 7039890 7040266 -142476771 + L1_Mm LINE L1 5246 5622 -261 5 638 5047 74 0 0 chr6 7040266 7040877 -142476160 + L1_Mus1 LINE L1 5957 6567 0 5 638 384 55 17 52 chr6 7040878 7040912 -142476125 + ORR1B1 LTR MaLR 312 344 -23 5 638 311 0 26 0 chr6 7040912 7040951 -142476086 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 638 384 55 17 52 chr6 7040951 7040974 -142476063 + ORR1B1 LTR MaLR 345 367 0 5 638 311 310 15 30 chr6 7041647 7041780 -142475257 - MER73 LTR ERVL -103 541 411 5 638 810 279 56 32 chr6 7041847 7042132 -142474905 - MER73 LTR ERVL -351 293 2 5 638 434 292 106 15 chr6 7042233 7042431 -142474606 - HERVL74-int LTR ERVL -469 5216 5001 5 638 423 0 0 0 chr6 7043058 7043105 -142473932 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 638 563 302 39 0 chr6 7043108 7043235 -142473802 - RSINE1 SINE B4 -12 153 22 6 638 2622 167 74 4 chr6 7043235 7043734 -142473303 - RMER5 LTR ERV1 0 534 1 6 638 681 351 39 11 chr6 7043767 7044046 -142472991 - HERVL74-int LTR ERVL -2775 2910 2624 5 638 7368 56 0 0 chr6 7044166 7045062 -142471975 + L1Md_F2 LINE L1 4691 5586 -297 6 638 8546 53 0 0 chr6 7045062 7046046 -142470991 + L1Md_F2 LINE L1 5587 6570 -12 6 638 2353 115 6 18 chr6 7046073 7046402 -142470635 + ORR1A2 LTR MaLR 1 325 -2 6 638 319 232 14 0 chr6 7046472 7046541 -142470496 + HERVL74-int LTR ERVL 2809 2878 -2807 6 638 514 304 78 9 chr6 7046573 7046805 -142470232 - HERVL74-int LTR ERVL -3578 2107 1860 5 638 2879 224 64 20 chr6 7046967 7047838 -142469199 + RMER1B Other Other 44 1062 -4 6 638 995 234 76 35 chr6 7047820 7048187 -142468850 + L1_Mur3 LINE L1 3055 3436 -2444 6 638 21 36 0 0 chr6 7048197 7048225 -142468812 + AT_rich Low_complexity Low_complexity 1 28 0 6 638 257 75 25 0 chr6 7048231 7048271 -142468766 + B3A SINE B2 2 42 -156 6 638 507 107 0 0 chr6 7048278 7048353 -142468684 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 638 523 133 37 28 chr6 7048354 7048462 -142468575 - Lx4A LINE L1 -3 7055 6947 7 638 3203 105 4 26 chr6 7048491 7048982 -142468055 - L1_Mur2 LINE L1 -1458 4419 3940 7 638 5426 134 80 8 chr6 7048980 7050099 -142466938 + Lx4A LINE L1 5015 6222 -836 7 638 2142 100 3 70 chr6 7050101 7050457 -142466580 - IAPLTR1a_Mm LTR ERVK -5 332 1 7 638 58816 14 3 0 chr6 7050457 7056885 -142460152 - IAPEz-int LTR ERVK 0 6481 35 7 638 2142 100 3 70 chr6 7056897 7057253 -142459784 - IAPLTR1a_Mm LTR ERVK -5 332 1 7 638 5674 159 31 42 chr6 7057254 7057630 -142459407 + Lx4A LINE L1 6116 6458 -600 7 638 1093 72 65 0 chr6 7057630 7057768 -142459269 - B1_Mus2 SINE Alu 0 147 1 7 638 5674 159 31 42 chr6 7057768 7058344 -142458693 + Lx4A LINE L1 6459 7058 0 7 638 21 0 0 0 chr6 7058848 7058869 -142458168 + AT_rich Low_complexity Low_complexity 1 21 0 7 638 445 210 79 16 chr6 7060374 7060500 -142456537 + Lx7 LINE L1 7563 7696 0 7 638 2413 51 0 3 chr6 7060868 7061165 -142455872 + L1_Mm LINE L1 4787 5082 -801 7 638 11651 40 6 1 chr6 7061161 7062612 -142454425 - L1Md_F2 LINE L1 -634 5948 4489 8 638 300 328 22 17 chr6 7062785 7062965 -142454072 + L1M2 LINE L1 2149 2329 -4520 8 638 983 93 0 0 chr6 7062973 7063102 -142453935 + MT2C_Mm LTR ERVL 269 397 -78 8 638 1137 134 52 14 chr6 7063130 7063342 -142453695 + L1VL1 LINE L1 39 258 -6164 8 638 2520 114 86 0 chr6 7063350 7063744 -142453293 + L1Md_F2 LINE L1 480 907 -5709 8 638 12664 80 124 31 chr6 7063729 7065697 -142451340 + L1Md_F2 LINE L1 3435 5586 -297 8 638 8139 67 3 9 chr6 7065697 7066696 -142450341 + L1Md_F2 LINE L1 5587 6579 -3 8 638 230 275 25 12 chr6 7066698 7066779 -142450258 + L1_Mm LINE L1 1700 1781 -4102 8 638 225 321 53 8 chr6 7066943 7067075 -142449962 + L1M2 LINE L1 3293 3430 -3415 8 638 891 75 0 0 chr6 7067089 7067209 -142449828 + (TTCTC)n Simple_repeat Simple_repeat 3 122 0 8 638 468 0 0 0 chr6 7067210 7067262 -142449775 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 8 638 1008 187 170 0 chr6 7067262 7067497 -142449540 + L1_Mur3 LINE L1 5105 5379 -501 8 638 2262 211 59 77 chr6 7067511 7067707 -142449330 + Lx7 LINE L1 7082 7289 -407 8 638 2199 141 62 91 chr6 7067707 7068113 -142448924 + ORR1B1 LTR MaLR 1 394 0 9 638 2262 211 59 77 chr6 7068113 7068542 -142448495 + Lx7 LINE L1 7290 7696 0 8 638 1990 248 157 48 chr6 7068549 7068622 -142448415 + L1_Rod LINE L1 2422 2490 -3357 9 638 1297 27 0 26 chr6 7068622 7068773 -142448264 + B1_Mm SINE Alu 1 147 0 9 638 1990 248 157 48 chr6 7068773 7069430 -142447607 + L1_Rod LINE L1 2491 3247 -2600 9 638 477 0 0 0 chr6 7069430 7069483 -142447554 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 638 1990 248 157 48 chr6 7069483 7069649 -142447388 + L1_Rod LINE L1 3248 3416 -2431 9 638 307 275 184 17 chr6 7070299 7070473 -142446564 - LTR50 LTR ERVL -569 226 24 9 638 1194 73 0 0 chr6 7070658 7070877 -142446160 + (TG)n Simple_repeat Simple_repeat 1 219 0 9 638 823 118 7 62 chr6 7070939 7071084 -142445953 - B1_Mur3 SINE Alu -1 148 12 9 638 391 274 46 53 chr6 7070969 7071100 -142445937 - B4 SINE B4 -83 209 80 9 638 228 185 30 30 chr6 7071241 7071308 -142445729 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 9 638 259 239 54 43 chr6 7071333 7071425 -142445612 - Lx7 LINE L1 -361 7335 7243 9 638 275 304 22 0 chr6 7072540 7072632 -142444405 + L1M5 LINE L1 5452 5545 -649 1 638 693 173 45 8 chr6 7074232 7074366 -142442671 + B1_Mur2 SINE Alu 11 149 0 1 638 241 324 114 26 chr6 7074670 7074784 -142442253 - LTR79 LTR ERVL -330 197 74 1 638 351 307 136 96 chr6 7075198 7075418 -142441619 + LTR41B LTR ERVL 500 728 -30 1 638 188 176 76 0 chr6 7076582 7076701 -142440336 + (TCTA)n Simple_repeat Simple_repeat 2 129 0 1 638 298 291 19 46 chr6 7077012 7077228 -142439809 - L1M5 LINE L1 -331 5793 5583 1 638 1880 163 96 58 chr6 7077280 7077644 -142439393 - ORR1C1 LTR MaLR 0 378 1 1 639 351 0 0 0 chr6 7078028 7078067 -142438970 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 639 249 338 28 0 chr6 7078121 7078263 -142438774 + (CTAGGG)n Simple_repeat Simple_repeat 3 148 0 1 639 360 276 28 33 chr6 7078224 7078404 -142438633 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 1 639 270 257 0 39 chr6 7078502 7078684 -142438353 + (TTAGGG)n Simple_repeat Simple_repeat 5 179 0 1 639 264 312 0 0 chr6 7078882 7078962 -142438075 + (TTAGGG)n Simple_repeat Simple_repeat 6 85 0 1 639 307 309 12 0 chr6 7079236 7079320 -142437717 - B4A SINE B4 -207 85 1 1 639 300 259 23 34 chr6 7079598 7079686 -142437351 - PB1D7 SINE Alu -7 113 27 1 639 1267 274 43 13 chr6 7080585 7080958 -142436079 + Lx9 LINE L1 7058 7441 -203 1 639 356 226 29 114 chr6 7081477 7081617 -142435420 - RCHARR1 DNA MER1_type -1 973 846 1 639 767 237 73 0 chr6 7081645 7081822 -142435215 - RCHARR1 DNA MER1_type -725 249 60 1 639 243 391 18 24 chr6 7081908 7082073 -142434964 + MIRb SINE MIR 102 265 -3 1 639 438 316 222 33 chr6 7082226 7082586 -142434451 + MLT2F LTR ERVL 179 606 -57 1 639 441 0 0 0 chr6 7082990 7083039 -142433998 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 639 198 0 0 0 chr6 7083039 7083060 -142433977 + (CG)n Simple_repeat Simple_repeat 2 23 0 1 639 180 0 0 0 chr6 7083060 7083079 -142433958 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 639 204 97 0 0 chr6 7084655 7084686 -142432351 + (GGA)n Simple_repeat Simple_repeat 3 33 0 1 639 822 73 0 0 chr6 7087388 7087498 -142429539 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 1 639 1536 127 9 166 chr6 7087552 7087902 -142429135 - Lx4A LINE L1 -64 6994 6700 1 639 304 325 67 85 chr6 7087904 7088293 -142428744 + L2a LINE L2 2953 3406 -20 1 639 747 305 70 10 chr6 7088600 7088901 -142428136 - MER44A DNA MER2_type -7 332 14 1 639 232 217 0 28 chr6 7089346 7089417 -142427620 + RMER17C LTR ERVK 192 260 -150 1 639 608 59 12 0 chr6 7089572 7089657 -142427380 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 639 227 279 127 0 chr6 7089721 7089800 -142427237 - L1ME4a LINE L1 -16 6108 6020 1 639 386 213 105 45 chr6 7090011 7090025 -142427012 + ORR1A3-int LTR MaLR 594 615 -1348 1 639 1797 175 186 24 chr6 7090025 7090488 -142426549 + MT2B2 LTR ERVL 1 538 -46 1 639 22 35 0 0 chr6 7090489 7090518 -142426519 + AT_rich Low_complexity Low_complexity 1 29 0 1 639 229 210 81 0 chr6 7090537 7090599 -142426438 - L1MB7 LINE L1 -78 6106 6040 1 639 48 32 0 0 chr6 7090696 7090758 -142426279 + AT_rich Low_complexity Low_complexity 1 62 0 1 639 231 36 0 0 chr6 7090835 7090863 -142426174 + (A)n Simple_repeat Simple_repeat 1 28 0 1 639 645 178 42 0 chr6 7090880 7090998 -142426039 + B1_Mur4 SINE Alu 28 150 0 1 639 230 315 75 75 chr6 7092289 7092450 -142424587 - Tigger5 DNA MER2_type -2244 162 2 1 639 261 0 0 0 chr6 7093507 7093536 -142423501 + (TTTTTG)n Simple_repeat Simple_repeat 6 34 0 1 639 196 333 99 0 chr6 7093751 7093832 -142423205 - L2c LINE L2 -20 3367 3279 1 639 625 318 4 61 chr6 7093865 7094096 -142422941 - ID_B1 SINE B4 -6 218 1 1 639 245 327 35 26 chr6 7095623 7095736 -142421301 + MLT1J LTR MaLR 4 117 -395 1 639 226 306 23 12 chr6 7096708 7096794 -142420243 + MIRb SINE MIR 21 107 -161 1 639 504 273 0 0 chr6 7097043 7097142 -142419895 - RSINE1 SINE B4 -51 114 16 1 639 789 228 31 11 chr6 7097175 7097366 -142419671 - B2_Mm2 SINE B2 0 195 1 1 639 279 325 43 44 chr6 7097823 7097989 -142419048 - MIRb SINE MIR -77 191 16 1 639 7957 93 15 3 chr6 7098204 7099674 -142417363 - L1_Mus4 LINE L1 0 6636 5148 1 639 696 273 54 5 chr6 7100024 7100245 -142416792 + L1MD2 LINE L1 5052 5283 -863 1 639 2581 137 29 2 chr6 7100782 7101187 -142415850 + Lx5 LINE L1 4489 4905 -972 1 639 5135 102 55 11 chr6 7101187 7101299 -142415738 + Lx3A LINE L1 6218 6334 -647 1 639 3539 96 13 11 chr6 7101299 7101773 -142415264 + MT2C_Mm LTR ERVL 1 475 0 1 639 5135 102 55 11 chr6 7101773 7102385 -142414652 + Lx3A LINE L1 6335 6974 -7 1 639 2581 137 29 2 chr6 7102385 7102397 -142414640 + Lx5 LINE L1 4906 4917 -960 1 639 1125 145 10 5 chr6 7102400 7102608 -142414429 + Lx3_Mus LINE L1 5908 6116 -893 1 639 9100 3 1 0 chr6 7102606 7103892 -142413145 - L1Md_A LINE L1 0 6582 5295 1 639 3754 5 0 0 chr6 7103891 7104306 -142412731 + L1Md_A LINE L1 4888 5302 -581 1 639 6837 86 15 13 chr6 7104306 7105086 -142411951 + Lx3_Mus LINE L1 6100 6871 -138 1 639 198 0 0 0 chr6 7105086 7105108 -142411929 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 1 639 6837 86 15 13 chr6 7105108 7105235 -142411802 + Lx3_Mus LINE L1 6872 7008 -1 1 639 215 135 0 55 chr6 7105236 7105291 -142411746 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 1 639 6740 169 40 16 chr6 7105291 7107368 -142409669 + Lx5 LINE L1 4907 7047 -3 1 639 1344 279 109 78 chr6 7107608 7108101 -142408936 + L1MD2 LINE L1 5428 5896 -463 1 639 206 0 69 0 chr6 7108101 7108130 -142408907 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 639 1344 279 109 78 chr6 7108130 7108531 -142408506 + L1MD2 LINE L1 5897 6350 -9 1 639 192 125 0 0 chr6 7108840 7108872 -142408165 + (GGGAGA)n Simple_repeat Simple_repeat 1 32 0 1 639 339 113 0 0 chr6 7109651 7109713 -142407324 + (TCTG)n Simple_repeat Simple_repeat 3 64 0 1 639 579 62 0 0 chr6 7109713 7109792 -142407245 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 639 459 198 0 0 chr6 7110437 7110523 -142406514 - Lx7 LINE L1 -4 7692 7607 1 639 1866 205 32 48 chr6 7110532 7110968 -142406069 + Lx7 LINE L1 6880 7308 -388 1 639 1918 93 21 14 chr6 7111089 7111372 -142405665 + MTB_Mm LTR MaLR 1 285 -122 1 639 3561 38 2 2 chr6 7111372 7111768 -142405269 + MTA_Mm LTR MaLR 1 396 0 1 639 9734 37 3 1 chr6 7111768 7112864 -142404173 + MTA_Mm-int LTR MaLR 1 1098 0 1 639 3583 38 2 0 chr6 7112864 7113259 -142403778 + MTA_Mm LTR MaLR 1 396 0 1 639 2658 78 50 30 chr6 7113259 7113372 -142403665 + MTB_Mm LTR MaLR 286 405 -2 1 639 616 270 8 2 chr6 7113423 7113561 -142403476 + B3 SINE B2 1 135 -81 1 639 3611 48 2 0 chr6 7113561 7113980 -142403057 + L1Md_F2 LINE L1 6160 6579 -3 1 639 388 314 10 60 chr6 7113980 7114041 -142402996 + B2_Mm2 SINE B2 129 189 -6 1 639 25994 95 37 1 chr6 7114043 7117556 -142399481 + L1Md_F2 LINE L1 2035 5587 -296 1 639 8528 48 5 1 chr6 7117556 7118545 -142398492 + L1Md_F3 LINE L1 5588 6580 -4 1 639 25994 55 0 2 chr6 7118545 7119380 -142397657 + L1Md_F2 LINE L1 5588 6515 -67 1 639 1887 169 0 67 chr6 7119384 7119714 -142397323 - RLTR10E LTR ERVK -3 308 1 1 639 53135 90 10 17 chr6 7119714 7126901 -142390136 - MMERVK10C-int LTR ERVK 0 7581 441 1 639 1289 149 43 9 chr6 7126980 7127190 -142389847 - MMERVK10C-int LTR ERVK -7140 441 225 1 639 230 244 0 0 chr6 7127190 7127235 -142389802 - RLTR27 LTR ERVK -34 275 231 1 639 673 100 30 0 chr6 7127235 7127335 -142389702 - MMERVK10C-int LTR ERVK -7478 103 1 1 639 2070 149 0 10 chr6 7127340 7127651 -142389386 - RLTR10E LTR ERVK -3 308 1 1 639 505 0 0 0 chr6 7127651 7127707 -142389330 + L1Md_F2 LINE L1 6510 6565 -17 1 639 10309 92 1 0 chr6 7127725 7129874 -142387163 + L1_Mus1 LINE L1 4416 6567 0 1 639 231 291 51 0 chr6 7130366 7130445 -142386592 - MLT1K LTR MaLR -14 581 499 1 639 1091 90 0 0 chr6 7130461 7130595 -142386442 + B1_Mm SINE Alu 1 134 -13 1 639 182 270 15 60 chr6 7130787 7130854 -142386183 + L2a LINE L2 3331 3394 -32 1 639 6075 177 94 113 chr6 7131165 7133192 -142383845 - ORR1B1-int LTR MaLR -2 1961 7 1 639 1121 99 0 0 chr6 7133192 7133334 -142383703 - B1_Mus2 SINE Alu -5 142 1 1 639 6075 178 109 133 chr6 7133334 7133539 -142383498 - ORR1B1-int LTR MaLR -1664 299 90 1 639 37214 49 8 7 chr6 7133565 7134846 -142382191 - L1Md_F2 LINE L1 -58 6527 5247 1 639 495 0 0 0 chr6 7134846 7134901 -142382136 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 639 37214 55 5 3 chr6 7134901 7139246 -142377791 - L1Md_F2 LINE L1 -640 5246 794 1 639 244 154 0 0 chr6 7139247 7139286 -142377751 - L1Md_F2 LINE L1 -5988 631 593 1 639 402 211 22 0 chr6 7139289 7139379 -142377658 - L1Md_F2 LINE L1 -6193 426 335 1 639 287 202 33 11 chr6 7139384 7139474 -142377563 - L1VL1 LINE L1 -6329 93 2 1 639 582 180 10 0 chr6 7139476 7139576 -142377461 - ORR1B1-int LTR MaLR -1862 101 1 1 639 1297 143 5 28 chr6 7139576 7139791 -142377246 - ORR1B1 LTR MaLR 0 384 175 1 639 682 117 17 0 chr6 7139792 7139912 -142377125 + (GA)n Simple_repeat Simple_repeat 1 122 0 1 639 266 89 44 0 chr6 7141054 7141099 -142375938 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 639 514 272 50 35 chr6 7141102 7141243 -142375794 - RSINE1 SINE B4 -17 148 6 1 639 327 284 155 14 chr6 7141324 7141531 -142375506 + MLT1L LTR MaLR 371 606 -4 1 639 242 304 106 49 chr6 7141529 7141579 -142375458 + LTR48 LTR ERV1 7 61 -583 1 639 531 0 0 0 chr6 7141579 7141638 -142375399 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 639 242 304 106 49 chr6 7141638 7141729 -142375308 + LTR48 LTR ERV1 62 155 -489 1 639 405 296 127 40 chr6 7141765 7141882 -142375155 + LTR48 LTR ERV1 480 545 -242 1 639 288 0 0 0 chr6 7141882 7141914 -142375123 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 639 405 291 116 73 chr6 7141914 7142158 -142374879 + LTR48 LTR ERV1 526 746 -41 1 639 413 239 0 22 chr6 7142921 7143011 -142374026 - ID_B1 SINE B4 0 224 137 1 639 663 103 0 0 chr6 7143139 7143236 -142373801 + (TCC)n Simple_repeat Simple_repeat 2 98 0 1 639 368 127 0 0 chr6 7143238 7143293 -142373744 - ORR1C1 LTR MaLR 0 378 324 1 639 858 39 1 8 chr6 7143877 7143994 -142373043 + L1Md_F2 LINE L1 5835 5946 -636 1 639 1740 168 11 74 chr6 7145114 7145467 -142371570 - ORR1C1 LTR MaLR -47 331 1 1 639 826 122 7 7 chr6 7145469 7145618 -142371419 + (TTCC)n Simple_repeat Simple_repeat 4 152 0 1 639 267 31 0 0 chr6 7145866 7145898 -142371139 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 639 999 226 166 0 chr6 7146117 7146413 -142370624 + Lx9 LINE L1 7266 7610 -34 1 639 314 135 0 39 chr6 7147005 7147082 -142369955 + CT-rich Low_complexity Low_complexity 1 74 0 1 639 570 86 0 0 chr6 7147090 7147171 -142369866 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 639 386 23 0 0 chr6 7147374 7147418 -142369619 + L1Md_F2 LINE L1 6520 6563 -19 1 639 214 306 128 61 chr6 7147443 7147622 -142369415 - L2b LINE L2 -153 3273 3096 1 639 3399 56 2 5 chr6 7147622 7148019 -142369018 - MTA_Mm LTR MaLR 0 396 1 1 639 214 310 168 34 chr6 7148019 7148223 -142368814 - L2b LINE L2 -280 3095 2854 1 639 371 254 81 40 chr6 7148356 7148504 -142368533 - L1MB4 LINE L1 -25 6155 6002 1 639 379 315 23 8 chr6 7148512 7148643 -142368394 + MTEb LTR MaLR 1 133 -246 1 639 2102 46 0 0 chr6 7151223 7151462 -142365575 - L1Md_T LINE L1 0 6582 6344 1 639 898 233 109 80 chr6 7152806 7153179 -142363858 - MT2B LTR ERVL -2 599 127 2 639 4938 74 0 0 chr6 7153179 7153775 -142363262 + L1_Mus2 LINE L1 5970 6565 -1 2 639 790 253 124 93 chr6 7153775 7153916 -142363121 - MT2B LTR ERVL -407 126 1 2 639 436 71 0 0 chr6 7153916 7153972 -142363065 - MERVL_2A-int LTR ERVL 0 5761 5706 2 639 234 233 0 40 chr6 7153972 7154048 -142362989 - ORR1A3-int LTR MaLR -1324 639 567 2 639 3710 170 40 17 chr6 7154048 7154707 -142362330 - MERVL_2A-int LTR ERVL -133 5628 4955 2 639 209 33 33 0 chr6 7154710 7154740 -142362297 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 639 1043 39 0 0 chr6 7154740 7154869 -142362168 - B1_Mm SINE Alu -9 138 10 2 639 8910 181 38 16 chr6 7154869 7156199 -142360838 - MERVL_2A-int LTR ERVL -819 4942 3579 2 639 189 0 0 0 chr6 7156199 7156220 -142360817 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 639 8910 181 38 16 chr6 7156220 7156554 -142360483 - MERVL_2A-int LTR ERVL -2183 3578 3242 2 639 867 144 0 0 chr6 7156755 7157084 -142359953 + (CA)n Simple_repeat Simple_repeat 1 329 0 2 639 4994 166 41 13 chr6 7157089 7157943 -142359094 - MERVL_2A-int LTR ERVL -2548 3213 2336 2 639 461 95 61 0 chr6 7157985 7158088 -142358949 - L1Md_F3 LINE L1 -14 6570 6462 2 639 4984 152 14 2 chr6 7158088 7158874 -142358163 - MERVL_2A-int LTR ERVL -3414 2347 1553 2 639 539 210 0 6 chr6 7159120 7159297 -142357740 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 639 227 214 18 0 chr6 7159738 7159794 -142357243 + GA-rich Low_complexity Low_complexity 2 58 0 2 639 917 88 15 0 chr6 7160209 7160345 -142356692 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 2 639 572 135 0 0 chr6 7161184 7161280 -142355757 + Lx3C LINE L1 6880 6975 -1 2 639 390 300 91 0 chr6 7162243 7162353 -142354684 - PB1D7 SINE Alu 0 120 1 2 639 236 272 174 0 chr6 7162668 7162760 -142354277 + LTR16D LTR ERVL 307 414 -237 2 639 758 178 67 0 chr6 7162719 7162854 -142354183 - B1_Mur4 SINE Alu 0 150 7 2 639 253 273 11 64 chr6 7163135 7163229 -142353808 - PB1D10 SINE Alu -20 97 9 2 639 268 317 24 55 chr6 7163833 7163960 -142353077 + PB1D7 SINE Alu 6 128 -21 2 639 234 264 70 78 chr6 7164073 7164188 -142352849 + MLT1A1 LTR MaLR 1 114 -294 2 639 237 284 0 43 chr6 7164424 7164494 -142352543 + MTE2a LTR MaLR 275 341 -38 2 639 1350 196 39 11 chr6 7164612 7164891 -142352146 - RLTR11A2 LTR ERVK -25 502 216 2 639 3477 104 29 4 chr6 7165121 7165605 -142351432 - Lx3C LINE L1 -6 6970 6475 2 639 326 304 68 73 chr6 7165647 7165853 -142351184 + L1MEd LINE L1 935 1139 -4980 2 639 593 96 51 14 chr6 7166448 7166586 -142350451 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 2 639 284 258 22 22 chr6 7166843 7166934 -142350103 - L2a LINE L2 -2 3424 3334 2 639 231 36 0 0 chr6 7167535 7167563 -142349474 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 639 305 321 73 44 chr6 7167816 7167953 -142349084 + MER34A LTR ERV1 5 145 -426 2 639 333 0 0 0 chr6 7168274 7168311 -142348726 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 639 423 149 0 0 chr6 7168312 7168386 -142348651 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 2 639 738 264 88 40 chr6 7168533 7168805 -142348232 - B4A SINE B4 -7 285 1 2 639 1356 67 0 0 chr6 7168951 7169131 -142347906 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 639 342 313 114 38 chr6 7169164 7169400 -142347637 - L1ME3A LINE L1 -301 5872 5619 2 639 318 26 0 0 chr6 7169502 7169541 -142347496 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 639 4531 159 46 10 chr6 7169733 7170538 -142346499 + Lx4A LINE L1 6215 7048 -10 2 639 225 0 0 0 chr6 7170538 7170563 -142346474 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 639 4467 142 30 6 chr6 7170569 7171404 -142345633 + L1_Mur2 LINE L1 4442 5296 -581 2 639 6077 87 3 2 chr6 7171411 7172789 -142344248 + L1_Mus1 LINE L1 4956 6333 -234 2 639 273 163 0 39 chr6 7172826 7172877 -142344160 + B3 SINE B2 2 50 -166 2 639 1022 238 35 18 chr6 7172879 7173210 -142343827 + RLTR6-int LTR ERV1 5042 5319 -2459 2 639 333 356 37 15 chr6 7173811 7174082 -142342955 + RLTR6-int LTR ERV1 7424 7700 -78 2 639 5710 78 27 8 chr6 7174642 7175427 -142341610 - L1Md_F2 LINE L1 0 6582 5783 2 639 258 105 0 0 chr6 7175427 7175465 -142341572 + (T)n Simple_repeat Simple_repeat 1 38 0 2 639 5596 14 0 0 chr6 7175467 7176097 -142340940 - L1Md_T LINE L1 0 6582 5953 2 639 6764 19 0 0 chr6 7176097 7176991 -142340046 + L1Md_T LINE L1 5061 5954 -628 2 639 19487 164 76 23 chr6 7176993 7182694 -142334343 - L1Md_F LINE L1 -96 5790 98 2 639 1125 159 64 56 chr6 7182746 7183012 -142334025 - RMER10B LTR ERVL -130 268 1 2 639 301 255 43 0 chr6 7183169 7183263 -142333774 - L1M5 LINE L1 -3193 2953 2856 2 639 585 185 176 0 chr6 7183704 7183823 -142333214 - B1_Mus2 SINE Alu -7 140 1 2 639 369 273 20 20 chr6 7184093 7184194 -142332843 + MTEa LTR MaLR 278 378 -1 2 639 1192 329 33 13 chr6 7184195 7184654 -142332383 + MTEa-int LTR MaLR 1 468 -1112 2 639 538 284 61 147 chr6 7184654 7185207 -142331830 - RLTR18 LTR ERVK -47 569 150 2 639 216 0 0 0 chr6 7185207 7185231 -142331806 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 2 639 538 282 67 144 chr6 7185231 7185338 -142331699 - RLTR18 LTR ERVK -467 149 32 2 639 942 68 88 0 chr6 7185606 7185754 -142331283 + L1_Mus3 LINE L1 6472 6632 -6 2 639 457 294 68 27 chr6 7185898 7186045 -142330992 + MTEa-int LTR MaLR 808 960 -620 2 639 1639 195 87 10 chr6 7186606 7186759 -142330278 - MTC LTR MaLR 0 421 253 2 639 396 0 0 0 chr6 7186759 7186803 -142330234 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 639 1639 195 87 10 chr6 7186803 7187038 -142329999 - MTC LTR MaLR -169 252 5 2 639 243 61 0 0 chr6 7187080 7187113 -142329924 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 2 639 315 0 0 0 chr6 7187199 7187234 -142329803 + (TTA)n Simple_repeat Simple_repeat 1 35 0 2 639 3029 133 95 4 chr6 7187234 7187731 -142329306 - Lx4A LINE L1 -11 7047 6506 2 639 360 0 0 0 chr6 7187748 7187788 -142329249 + (TATG)n Simple_repeat Simple_repeat 2 41 0 2 639 802 277 40 0 chr6 7188322 7188524 -142328513 + ID_B1 SINE B4 10 219 -5 2 639 1340 256 67 3 chr6 7189599 7189955 -142327082 - MTEa LTR MaLR 0 379 1 2 639 193 291 11 132 chr6 7190935 7191026 -142326011 + MER5B DNA MER1_type 83 162 -16 2 639 363 136 0 0 chr6 7191663 7191722 -142325315 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 639 192 97 0 0 chr6 7191791 7191822 -142325215 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2 639 344 289 25 0 chr6 7192571 7192692 -142324345 - Lx4B LINE L1 -4 7054 6931 2 639 5452 151 39 7 chr6 7192692 7193566 -142323471 - RMER19B LTR ERVK 0 902 1 2 639 4553 181 75 16 chr6 7193573 7194647 -142322390 - Lx4B LINE L1 -266 6792 5719 2 639 1660 124 10 7 chr6 7194635 7194927 -142322110 - Lx4B LINE L1 -552 5325 5033 2 639 247 317 38 38 chr6 7195218 7195323 -142321714 + MER5A DNA MER1_type 12 116 -73 2 639 649 309 93 19 chr6 7195396 7195666 -142321371 - B4A SINE B4 -2 290 1 2 639 934 243 5 5 chr6 7195869 7196084 -142320953 + B3 SINE B2 1 215 -1 2 639 713 82 9 0 chr6 7196856 7196966 -142320071 + (TTCTC)n Simple_repeat Simple_repeat 4 114 0 2 639 1135 62 7 0 chr6 7196970 7197115 -142319922 - B1_Mus2 SINE Alu 0 147 2 2 639 1151 99 5 0 chr6 7197125 7197326 -142319711 + (TTTC)n Simple_repeat Simple_repeat 1 202 0 2 639 3259 88 36 4 chr6 7197326 7197827 -142319210 - Lx3_Mus LINE L1 -26 6983 6467 2 639 2723 50 0 0 chr6 7198871 7199214 -142317823 - L1Md_F2 LINE L1 -235 6347 6005 2 639 294 304 0 37 chr6 7199214 7199296 -142317741 + RSINE1 SINE B4 87 165 0 2 639 33 25 0 0 chr6 7199307 7199347 -142317690 + AT_rich Low_complexity Low_complexity 1 40 0 2 639 615 291 87 57 chr6 7200192 7200560 -142316477 + MTEa LTR MaLR 1 379 0 2 639 340 363 95 35 chr6 7200634 7200834 -142316203 + MLT1J2 LTR MaLR 237 448 0 2 639 357 24 0 0 chr6 7201394 7201436 -142315601 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 639 189 330 126 0 chr6 7202206 7202309 -142314728 + MIRm SINE MIR 159 274 -2 2 639 791 255 10 31 chr6 7202380 7202574 -142314463 - B3 SINE B2 -26 190 1 2 639 327 289 23 130 chr6 7202671 7202802 -142314235 + MTEa LTR MaLR 2 118 -261 2 639 222 37 0 0 chr6 7202807 7202834 -142314203 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 639 926 76 8 0 chr6 7202856 7202988 -142314049 + (TC)n Simple_repeat Simple_repeat 1 133 0 2 639 315 0 0 0 chr6 7202988 7203022 -142314015 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 639 180 111 0 0 chr6 7203218 7203245 -142313792 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 639 438 264 88 160 chr6 7203998 7204427 -142312610 - RMER2 LTR ERV1 -30 537 1 2 639 214 252 77 48 chr6 7204557 7204661 -142312376 - MIR3 SINE MIR -39 169 63 2 639 21 0 0 0 chr6 7205222 7205243 -142311794 + AT_rich Low_complexity Low_complexity 1 21 0 2 639 1346 246 185 8 chr6 7205840 7206316 -142310721 - Lx9 LINE L1 -613 7031 6472 2 639 647 130 7 0 chr6 7206316 7206462 -142310575 + (TTTTTG)n Simple_repeat Simple_repeat 4 150 0 2 639 324 0 0 0 chr6 7206525 7206561 -142310476 + (TGG)n Simple_repeat Simple_repeat 3 38 0 2 639 384 328 7 22 chr6 7206785 7206922 -142310115 - Lx9 LINE L1 -1689 5955 5821 2 639 22 56 0 0 chr6 7206955 7206991 -142310046 + AT_rich Low_complexity Low_complexity 1 36 0 2 639 6396 57 18 0 chr6 7207015 7207809 -142309228 + RLTR13C2 LTR ERVK 1 808 0 2 639 851 123 29 0 chr6 7207881 7208052 -142308985 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 2 79 6594 160 177 16 chr6 7208690 7209255 -142307782 - Lx3C LINE L1 -2 6974 6326 2 640 3865 55 9 104 chr6 7209255 7209821 -142307216 + RLTR1B LTR ERV1 1 512 0 2 640 6594 146 7 9 chr6 7209821 7210710 -142306327 - Lx3C LINE L1 -651 6325 5434 2 640 1605 114 11 11 chr6 7210705 7210980 -142306057 - L1_Mur1 LINE L1 -3324 2562 2288 2 640 19067 126 15 161 chr6 7210998 7217870 -142299167 - L1_Mus1 LINE L1 0 6654 755 2 640 1789 182 80 23 chr6 7217861 7218402 -142298635 - L1VL4 LINE L1 -2253 1306 768 2 640 1138 88 0 0 chr6 7218402 7218550 -142298487 - B1_Mus1 SINE Alu 0 148 1 2 640 1323 204 44 97 chr6 7218550 7218789 -142298248 - L1VL4 LINE L1 -5535 767 521 2 640 271 292 34 25 chr6 7219418 7219592 -142297445 - L1_Rod LINE L1 -2424 3423 3241 2 640 519 262 114 95 chr6 7219800 7220011 -142297026 + B3 SINE B2 2 216 0 2 640 27 0 0 0 chr6 7221157 7221184 -142295853 + AT_rich Low_complexity Low_complexity 1 27 0 2 640 22 80 0 0 chr6 7221246 7221296 -142295741 + AT_rich Low_complexity Low_complexity 1 50 0 3 640 315 0 0 0 chr6 7221330 7221365 -142295672 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 640 1145 82 0 0 chr6 7223289 7223435 -142293602 + B1_Mus2 SINE Alu 2 147 0 3 640 267 54 0 0 chr6 7223435 7223472 -142293565 + (A)n Simple_repeat Simple_repeat 1 37 0 3 640 2587 86 22 0 chr6 7224828 7225189 -142291848 - L1_Mus1 LINE L1 0 6567 6199 3 640 8846 112 1 6 chr6 7225192 7226570 -142290467 + L1_Mm LINE L1 4511 5881 -2 3 640 519 31 0 0 chr6 7227255 7227320 -142289717 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 640 1478 109 112 103 chr6 7227330 7227679 -142289358 - RLTR9C LTR ERVK 0 393 42 3 640 599 295 57 6 chr6 7227673 7227830 -142289207 - B4A SINE B4 -126 166 2 3 640 229 260 20 0 chr6 7228055 7228105 -142288932 + MER45B DNA Tip100 984 1034 -6 3 640 1669 185 43 35 chr6 7229377 7229752 -142287285 + ORR1C1 LTR MaLR 1 378 0 3 640 25 0 0 0 chr6 7230433 7230458 -142286579 + AT_rich Low_complexity Low_complexity 1 25 0 3 640 1358 6 0 0 chr6 7230702 7230860 -142286177 - L1Md_A LINE L1 0 6582 6425 3 640 1161 255 86 16 chr6 7231098 7231401 -142285636 - ORR1D2 LTR MaLR 0 370 47 3 640 3366 171 38 6 chr6 7231402 7232039 -142284998 - Lx LINE L1 0 6654 5998 3 640 5990 78 8 1 chr6 7232057 7232889 -142284148 - L1_Mus1 LINE L1 0 6567 5730 3 640 1245 82 27 5 chr6 7232889 7233073 -142283964 - RLTR45 LTR ERVK 0 482 295 3 640 2343 112 24 41 chr6 7233073 7233491 -142283546 - IAPLTR2a LTR ERVK 0 411 1 3 640 24964 19 3 0 chr6 7233491 7236438 -142280599 - IAPEz-int LTR ERVK 0 6481 3525 3 640 886 73 24 0 chr6 7236438 7236561 -142280476 - IAPEz-int LTR ERVK -2770 4910 4785 3 640 1713 115 4 8 chr6 7236558 7236821 -142280216 - IAPEz-int LTR ERVK -5183 2497 2236 3 640 424 38 0 0 chr6 7236820 7236873 -142280164 - IAPEz-int LTR ERVK -5070 1411 1359 3 640 4707 52 7 52 chr6 7236873 7237559 -142279478 - IAPEz-int LTR ERVK -5819 662 8 3 640 2343 112 24 41 chr6 7237559 7237977 -142279060 - IAPLTR2a LTR ERVK 0 411 1 3 640 1149 153 154 37 chr6 7238000 7238272 -142278765 - RLTR45 LTR ERVK -178 304 1 3 640 5118 99 3 0 chr6 7238273 7239022 -142278015 - L1_Mm LINE L1 -149 5734 4984 3 640 3347 109 11 0 chr6 7239021 7239551 -142277486 + L1_Mm LINE L1 4473 5008 -875 3 640 4563 129 1 0 chr6 7239548 7240460 -142276577 - Lx LINE L1 -642 6012 5100 3 640 625 328 34 8 chr6 7240514 7240778 -142276259 - Lx8 LINE L1 -160 7313 7043 3 640 2446 105 3 6 chr6 7240780 7241144 -142275893 - Lx2 LINE L1 -1 6996 6634 3 640 388 279 152 16 chr6 7241188 7241432 -142275605 - L1MB4 LINE L1 -22 6158 5882 3 640 387 0 0 0 chr6 7241512 7241555 -142275482 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 640 363 328 0 63 chr6 7241555 7241575 -142275462 - ID_B1 SINE B4 -9 215 82 3 640 590 212 8 41 chr6 7241575 7241698 -142275339 - B1_Mur4 SINE Alu -31 119 1 3 640 237 380 7 52 chr6 7241867 7242003 -142275034 + ID_B1 SINE B4 91 220 -4 3 640 855 276 39 58 chr6 7242134 7242445 -142274592 + Lx5 LINE L1 6746 7050 0 3 640 783 107 74 0 chr6 7243195 7243317 -142273720 + B1_Mur3 SINE Alu 10 140 -9 3 640 315 0 0 0 chr6 7243317 7243352 -142273685 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 640 482 282 107 6 chr6 7243444 7243622 -142273415 - MER2 DNA MER2_type -149 196 1 3 640 22 99 0 0 chr6 7243649 7243720 -142273317 + AT_rich Low_complexity Low_complexity 1 71 0 3 640 22 0 0 0 chr6 7243746 7243768 -142273269 + AT_rich Low_complexity Low_complexity 1 22 0 3 640 457 310 54 30 chr6 7243984 7244187 -142272850 + MER21B LTR ERV1 140 347 -516 3 640 4801 224 34 69 chr6 7244416 7245445 -142271592 + Lx7 LINE L1 6403 7413 -283 3 640 1162 142 108 0 chr6 7245445 7245649 -142271388 - URR1A DNA MER1_type 0 226 1 3 640 4801 224 34 69 chr6 7245649 7245847 -142271190 + Lx7 LINE L1 7414 7593 -103 3 640 2338 164 26 3 chr6 7245847 7246232 -142270805 - ORR1B1 LTR MaLR 0 394 1 3 640 4801 224 34 69 chr6 7246232 7246344 -142270693 + Lx7 LINE L1 7594 7696 0 3 640 955 132 0 11 chr6 7246379 7246555 -142270482 + (GAA)n Simple_repeat Simple_repeat 3 176 0 3 640 635 244 176 0 chr6 7246576 7246752 -142270285 + B3 SINE B2 5 211 -5 3 640 315 0 0 0 chr6 7246821 7246856 -142270181 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 640 531 0 0 0 chr6 7246867 7246926 -142270111 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 640 388 352 75 12 chr6 7246933 7247094 -142269943 - MLT2B1 LTR ERVL -78 489 319 3 640 29 47 0 0 chr6 7247805 7247848 -142269189 + AT_rich Low_complexity Low_complexity 1 43 0 3 640 1652 291 93 35 chr6 7247852 7248650 -142268387 - Lx8 LINE L1 -2 7471 6628 3 640 3893 60 8 0 chr6 7248650 7249130 -142267907 + L1_Mus1 LINE L1 6083 6566 -1 3 640 421 311 33 26 chr6 7250285 7250437 -142266600 + MTD LTR MaLR 12 164 -255 3 640 1109 281 12 12 chr6 7250408 7250686 -142266351 + MTD LTR MaLR 48 361 -58 3 640 554 329 0 19 chr6 7251234 7251392 -142265645 + RSINE1 SINE B4 3 157 -8 3 640 208 300 14 0 chr6 7253857 7253927 -142263110 + (CATG)n Simple_repeat Simple_repeat 1 71 0 3 640 229 353 58 14 chr6 7255116 7255254 -142261783 - MER5A DNA MER1_type -37 152 9 3 640 202 345 127 71 chr6 7255528 7255740 -142261297 + MIRc SINE MIR 13 236 -32 3 640 441 145 0 0 chr6 7256754 7256830 -142260207 + (A)n Simple_repeat Simple_repeat 1 76 0 3 640 195 339 123 18 chr6 7257255 7257369 -142259668 + MIR3 SINE MIR 70 195 -13 3 640 245 333 48 0 chr6 7257619 7257724 -142259313 - MIR SINE MIR -123 139 30 3 640 598 351 65 33 chr6 7260436 7260742 -142256295 + MLT1A0 LTR MaLR 17 332 -33 3 640 1042 99 7 0 chr6 7261922 7262063 -142254974 + B1_Mm SINE Alu 6 147 0 3 640 26457 127 10 54 chr6 7263641 7267715 -142249322 + L1_Mus1 LINE L1 759 4872 -1011 3 640 756 33 0 0 chr6 7267715 7267806 -142249231 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 3 640 26457 108 6 35 chr6 7267806 7269787 -142247250 + L1_Mus1 LINE L1 4873 6567 0 3 640 368 86 35 0 chr6 7269827 7269885 -142247152 + L1_Mm LINE L1 3328 3387 -2496 3 640 580 126 0 51 chr6 7269885 7270002 -142247035 + L1_Mus1 LINE L1 6457 6567 0 3 640 286 161 48 0 chr6 7270258 7270320 -142246717 + L1MC5 LINE L1 7315 7379 -582 3 640 300 318 33 22 chr6 7270589 7270679 -142246358 + L1ME3A LINE L1 6045 6135 -38 3 640 5610 53 0 6 chr6 7271636 7272337 -142244700 + L1Md_F2 LINE L1 5874 6570 -12 3 640 244 25 24 48 chr6 7272448 7272490 -142244547 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 3 640 347 335 20 20 chr6 7273333 7273485 -142243552 - RMER5 LTR ERV1 -16 518 367 3 640 236 254 133 50 chr6 7273509 7273629 -142243408 - RMER5 LTR ERV1 -400 134 5 3 640 256 233 43 75 chr6 7273837 7273930 -142243107 + MIR SINE MIR 170 259 -3 3 640 232 345 46 0 chr6 7275463 7275550 -142241487 - MLT1A0 LTR MaLR -222 143 53 3 640 230 302 0 0 chr6 7275908 7275961 -142241076 - Cheshire DNA MER1_type -2195 225 173 3 640 1716 202 86 35 chr6 7277773 7278147 -142238890 - MTC LTR MaLR 0 421 29 3 640 190 205 0 25 chr6 7278434 7278474 -142238563 - MIRc SINE MIR -64 204 166 3 640 965 245 72 69 chr6 7278758 7279105 -142237932 - ORR1E LTR MaLR -10 349 2 3 640 1872 70 12 0 chr6 7279227 7279483 -142237554 - L1_Mus1 LINE L1 -386 6181 5923 3 640 2667 76 17 0 chr6 7279483 7279837 -142237200 + L1_Mus1 LINE L1 6208 6567 0 3 640 232 297 98 11 chr6 7281769 7281861 -142235176 + MER5A DNA MER1_type 89 188 -1 3 640 235 241 13 0 chr6 7281945 7282024 -142235013 - L1MC3 LINE L1 -2 7783 7704 3 640 550 239 23 40 chr6 7282041 7282215 -142234822 + Lx7 LINE L1 7526 7696 0 3 640 288 0 0 0 chr6 7282241 7282273 -142234764 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 3 640 436 217 0 0 chr6 7282273 7282365 -142234672 - MTD LTR MaLR -302 117 26 3 640 497 331 70 23 chr6 7282402 7282702 -142234335 - L1MC3 LINE L1 -378 7407 7094 3 640 36775 8 0 1 chr6 7283000 7288787 -142228250 + L1Md_A LINE L1 1 5586 -297 3 640 9058 3 0 0 chr6 7288787 7289783 -142227254 + L1Md_A LINE L1 5587 6582 0 3 640 207 0 0 0 chr6 7289792 7289815 -142227222 + (A)n Simple_repeat Simple_repeat 1 23 0 3 640 1494 200 69 58 chr6 7289823 7290200 -142226837 + ORR1C2 LTR MaLR 2 382 -2 3 640 1490 241 40 8 chr6 7290226 7290578 -142226459 + ORR1C2-int LTR MaLR 35 397 -973 3 640 3404 208 81 45 chr6 7290576 7291397 -142225640 + ORR1C2-int LTR MaLR 504 1370 0 3 640 1255 209 63 129 chr6 7291397 7291808 -142225229 + ORR1C2 LTR MaLR 1 384 0 3 640 191 216 0 0 chr6 7291826 7291863 -142225174 - MER5B DNA MER1_type 0 178 142 3 640 719 246 120 0 chr6 7292206 7292397 -142224640 + B3 SINE B2 3 216 0 3 640 1154 242 55 21 chr6 7292428 7292760 -142224277 + ORR1D1 LTR MaLR 1 356 -3 3 640 637 297 13 0 chr6 7293080 7293235 -142223802 + ID_B1 SINE B4 14 170 -54 3 640 197 359 76 0 chr6 7293851 7293943 -142223094 + MIRm SINE MIR 178 276 0 3 640 489 104 0 0 chr6 7295024 7295101 -142221936 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 3 640 200 292 0 0 chr6 7295650 7295698 -142221339 + (CATA)n Simple_repeat Simple_repeat 4 51 0 3 640 449 329 66 0 chr6 7296093 7296245 -142220792 + B4A SINE B4 7 168 -124 3 640 400 237 93 0 chr6 7296253 7296350 -142220687 + PB1D9 SINE Alu 1 106 -14 3 640 306 329 157 7 chr6 7296383 7296530 -142220507 + HAL1-3A_ME LINE L1 2283 2451 -407 3 640 402 21 0 0 chr6 7296585 7296632 -142220405 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 640 185 346 79 36 chr6 7296697 7296862 -142220175 - L2a LINE L2 -331 3095 2924 3 640 765 254 107 9 chr6 7297236 7297451 -142219586 + MTD LTR MaLR 75 310 -109 3 640 193 356 107 35 chr6 7298719 7298888 -142218149 - MIRc SINE MIR -75 193 13 3 640 352 30 14 57 chr6 7299459 7299529 -142217508 + (TTC)n Simple_repeat Simple_repeat 1 67 0 3 640 5115 101 176 3 chr6 7301534 7302406 -142214631 - L1_Mus4 LINE L1 -4 6632 5610 3 640 24 0 0 0 chr6 7302409 7302433 -142214604 + AT_rich Low_complexity Low_complexity 1 24 0 3 640 2869 109 22 27 chr6 7302941 7303392 -142213645 - L1Md_F2 LINE L1 -1 6581 6133 3 640 1994 267 130 9 chr6 7303674 7304313 -142212724 + RMER19A LTR ERVK 6 724 -13 3 640 3831 70 23 19 chr6 7304313 7304836 -142212201 + L1Md_F2 LINE L1 6058 6582 0 3 640 1994 267 130 9 chr6 7304836 7304849 -142212188 + RMER19A LTR ERVK 725 737 0 3 640 744 236 0 26 chr6 7306933 7307085 -142209952 + B1_Mur4 SINE Alu 2 149 -1 4 640 5648 112 32 8 chr6 7307814 7308756 -142208281 + Lx3_Mus LINE L1 5963 6960 -49 4 640 949 56 48 0 chr6 7308762 7308887 -142208150 - Lx3_Mus LINE L1 -538 6471 6341 4 640 832 281 93 5 chr6 7308936 7309140 -142207897 + B4 SINE B4 2 223 -69 4 640 1119 218 4 4 chr6 7309565 7309800 -142207237 - Lx7 LINE L1 -643 7053 6819 4 640 701 308 5 5 chr6 7309798 7310020 -142207017 + Lx7 LINE L1 7080 7301 -395 4 640 221 78 36 73 chr6 7310020 7310075 -142206962 + T-rich Low_complexity Low_complexity 5 57 0 4 640 180 0 0 0 chr6 7310096 7310116 -142206921 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 640 4077 131 4 35 chr6 7310238 7311011 -142206026 + L1Md_A LINE L1 563 1311 -5413 4 640 4749 54 2 2 chr6 7311005 7311634 -142205403 + L1Md_F3 LINE L1 4958 5586 -297 4 640 7906 28 41 2 chr6 7311635 7312593 -142204444 + L1Md_F3 LINE L1 5588 6582 -2 4 640 266 192 19 0 chr6 7313366 7313418 -142203619 - ORR1B2 LTR MaLR -155 239 187 4 640 359 229 0 2 chr6 7313419 7313508 -142203529 - ORR1B2 LTR MaLR -284 83 1 4 640 4861 184 81 16 chr6 7313508 7314570 -142202467 - ORR1B2-int LTR MaLR 0 1509 379 4 640 4762 77 1 0 chr6 7314570 7315237 -142201800 - L1_Mm LINE L1 -378 5505 4838 4 640 3367 82 2 0 chr6 7315237 7315677 -142201360 + L1_Mus1 LINE L1 6127 6567 0 4 640 1986 127 7 7 chr6 7315726 7316035 -142201002 - ORR1B2-int LTR MaLR -1200 309 1 4 640 1423 160 248 3 chr6 7316035 7316330 -142200707 - ORR1B2 LTR MaLR 0 367 1 4 640 475 259 120 0 chr6 7316456 7316614 -142200423 - MER5A DNA MER1_type -5 184 8 4 640 184 243 9 9 chr6 7317476 7317588 -142199449 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 640 309 100 0 0 chr6 7317594 7317644 -142199393 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 640 267 269 102 37 chr6 7317965 7318073 -142198964 - MLT1A1 LTR MaLR -26 382 268 4 640 396 0 0 0 chr6 7318704 7318748 -142198289 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 640 611 229 15 44 chr6 7319226 7319363 -142197674 + B1F SINE Alu 9 141 -8 4 640 381 22 0 0 chr6 7319859 7319905 -142197132 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 640 362 390 31 0 chr6 7320071 7320230 -142196807 - LTR16E1 LTR ERVL -235 303 140 4 640 28 29 0 0 chr6 7321523 7321558 -142195479 + AT_rich Low_complexity Low_complexity 1 35 0 4 640 371 150 60 0 chr6 7321691 7321791 -142195246 - Lx2A1 LINE L1 -14 6994 6889 4 640 1411 249 33 19 chr6 7322082 7322446 -142194591 - MTE2b LTR MaLR -2 377 9 4 640 261 0 0 0 chr6 7322637 7322666 -142194371 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 4 640 419 102 0 28 chr6 7322679 7322750 -142194287 + (TTC)n Simple_repeat Simple_repeat 1 69 0 4 640 238 341 64 21 chr6 7323466 7323607 -142193430 + B1F1 SINE Alu 1 147 -2 4 640 367 246 52 160 chr6 7323873 7324299 -142192738 + Lx9 LINE L1 7265 7644 0 4 640 963 288 108 29 chr6 7326035 7326379 -142190658 + MTEb LTR MaLR 3 373 -6 4 640 1210 62 0 0 chr6 7326904 7327048 -142189989 + B1_Mus1 SINE Alu 1 144 -4 4 640 476 276 28 18 chr6 7332084 7332296 -142184741 + L1MA5 LINE L1 5355 5567 -612 4 640 1944 153 62 117 chr6 7332299 7332640 -142184397 - MTC LTR MaLR -8 413 92 4 640 4327 61 9 0 chr6 7332640 7333183 -142183854 - L1_Mus1 LINE L1 0 6567 6020 4 640 1944 153 62 117 chr6 7333183 7333278 -142183759 - MTC LTR MaLR -330 91 1 4 640 289 310 27 0 chr6 7333278 7333463 -142183574 + L1MA5 LINE L1 5562 5751 -546 4 640 475 321 61 0 chr6 7333487 7333780 -142183257 + L1MA5 LINE L1 5941 6251 -49 4 640 4215 19 0 0 chr6 7334399 7334912 -142182125 - L1Md_A LINE L1 -448 5435 4923 4 640 1124 29 0 0 chr6 7334908 7335044 -142181993 + L1Md_A LINE L1 5451 5586 -297 4 640 8623 24 0 0 chr6 7335045 7336039 -142180998 + L1Md_A LINE L1 5588 6581 -1 4 640 24 67 0 0 chr6 7336040 7336085 -142180952 + AT_rich Low_complexity Low_complexity 1 45 0 4 640 273 328 67 26 chr6 7336375 7336569 -142180468 + L1M3d LINE L1 5 206 -5685 4 640 5808 111 38 7 chr6 7337003 7337876 -142179161 - Lx2 LINE L1 -4 6993 6094 4 640 1151 253 113 3 chr6 7337975 7338257 -142178780 + MTD LTR MaLR 93 405 -14 4 640 275 314 128 19 chr6 7338267 7338423 -142178614 - MLT1H2 LTR MaLR -211 278 106 4 640 427 281 126 47 chr6 7338630 7339034 -142178003 - L1MCa LINE L1 -4940 1811 1376 4 640 270 295 147 15 chr6 7339069 7339334 -142177703 - L1MA9 LINE L1 -7 6305 6006 4 640 322 310 144 26 chr6 7339390 7339904 -142177133 - L1MCa LINE L1 -5402 1349 679 4 641 482 356 69 45 chr6 7340044 7340376 -142176661 - L1MCa LINE L1 -6112 639 300 4 641 1019 310 68 20 chr6 7340560 7341063 -142175974 - Charlie2a DNA MER1_type -1735 1126 600 4 641 282 330 101 0 chr6 7341802 7341911 -142175126 - MIR3 SINE MIR -42 166 47 4 641 1487 205 17 0 chr6 7342062 7342350 -142174687 + RMER15 LTR ERVL 283 575 0 4 641 228 333 0 47 chr6 7342665 7342750 -142174287 - RMER4B LTR ERVK -157 428 348 4 641 204 205 0 0 chr6 7344052 7344091 -142172946 + (TTAGGG)n Simple_repeat Simple_repeat 6 44 0 4 641 35506 27 3 8 chr6 7344280 7349874 -142167163 + L1Md_A LINE L1 23 5586 -297 4 641 8543 29 0 0 chr6 7349875 7350869 -142166168 + L1Md_A LINE L1 5588 6581 -1 4 641 323 0 0 0 chr6 7350869 7350915 -142166122 + L1Md_T LINE L1 6537 6582 0 4 641 360 339 139 27 chr6 7350983 7351241 -142165796 + Arthur1 DNA Tip100 484 770 -3177 4 641 796 148 0 23 chr6 7351241 7351372 -142165665 + B1_Mur4 SINE Alu 2 129 -21 4 641 446 279 176 13 chr6 7351487 7351789 -142165248 + Arthur1 DNA Tip100 3596 3946 -1 4 641 425 291 17 70 chr6 7352361 7352554 -142164483 + B4A SINE B4 14 284 -8 4 641 297 118 0 0 chr6 7352566 7352617 -142164420 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 641 449 294 52 123 chr6 7353225 7353464 -142163573 - MLT2B3 LTR ERVL -62 453 230 4 641 219 125 0 0 chr6 7353464 7353504 -142163533 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 641 449 294 52 123 chr6 7353504 7353516 -142163521 - MLT2B3 LTR ERVL -286 229 220 4 641 194 98 49 0 chr6 7353523 7353564 -142163473 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 4 641 564 273 73 34 chr6 7353603 7353808 -142163229 - MLT2B3 LTR ERVL -322 232 20 4 641 397 300 194 29 chr6 7354023 7354229 -142162808 + RMER15 LTR ERVL 336 575 0 4 641 559 328 95 29 chr6 7354253 7354970 -142162067 + L1MDa LINE L1 1159 1922 -4711 4 641 1144 276 25 60 chr6 7355286 7355768 -142161269 + L1_Mur3 LINE L1 80 544 -7168 4 641 3164 211 17 48 chr6 7355764 7355880 -142161157 + Lx6 LINE L1 6794 6888 -572 4 641 1114 24 47 12 chr6 7355880 7356051 -142160986 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 4 641 3164 211 17 48 chr6 7356051 7356622 -142160415 + Lx6 LINE L1 6889 7460 0 4 641 180 0 0 0 chr6 7359371 7359391 -142157646 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 641 321 286 75 0 chr6 7359602 7359660 -142157377 + Lx9 LINE L1 7283 7343 -301 4 641 450 0 0 0 chr6 7359660 7359710 -142157327 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 641 321 286 75 0 chr6 7359710 7359784 -142157253 + Lx9 LINE L1 7344 7424 -220 4 641 336 24 0 0 chr6 7359823 7359864 -142157173 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 641 1455 295 88 22 chr6 7360116 7361190 -142155847 + L1MC1 LINE L1 5164 6318 -15 4 641 220 269 0 0 chr6 7361275 7361327 -142155710 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 641 183 42 0 0 chr6 7361327 7361351 -142155686 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 641 372 77 0 0 chr6 7362211 7362263 -142154774 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 641 180 329 71 0 chr6 7362419 7362489 -142154548 + MIRc SINE MIR 4 78 -190 4 641 303 357 155 0 chr6 7363079 7363247 -142153790 - MLT1J LTR MaLR -317 195 2 4 641 896 243 19 14 chr6 7363631 7363844 -142153193 + B3 SINE B2 2 215 -1 4 641 3549 240 58 34 chr6 7363951 7364827 -142152210 + ORR1D1-int LTR MaLR 2 898 -472 4 641 2463 71 6 50 chr6 7364993 7365335 -142151702 + ORR1A2 LTR MaLR 1 327 0 4 641 2372 224 21 4 chr6 7365611 7366078 -142150959 + ORR1D1-int LTR MaLR 893 1367 -3 4 641 1119 226 51 12 chr6 7366074 7366329 -142150708 + ORR1D1 LTR MaLR 1 265 -109 4 641 2842 103 5 0 chr6 7366993 7367391 -142149646 - MTB LTR MaLR 0 400 1 4 641 1931 53 16 0 chr6 7367782 7368028 -142149009 + L1_Mus1 LINE L1 6318 6567 0 4 641 1176 151 69 247 chr6 7368228 7368649 -142148388 + ORR1A1 LTR MaLR 1 346 0 4 641 390 314 110 0 chr6 7369192 7369310 -142147727 + B1_Mus2 SINE Alu 1 131 -16 4 641 307 349 106 0 chr6 7369310 7369321 -142147716 + ID_B1 SINE B4 82 224 0 4 641 1396 228 41 22 chr6 7369423 7369790 -142147247 - ORR1D1 LTR MaLR 0 374 1 4 641 1504 196 74 28 chr6 7369823 7370148 -142146889 - ORR1C2 LTR MaLR -44 340 1 4 641 992 179 81 10 chr6 7370446 7370655 -142146382 - URR1B DNA MER1_type 0 225 2 4 641 262 346 62 66 chr6 7371042 7371268 -142145769 + LTR82A LTR ERVL 13 237 -635 4 641 624 386 69 50 chr6 7371109 7371733 -142145304 + LTR82B Low_complexity ERVL 86 721 -109 4 641 221 241 19 0 chr6 7372451 7372505 -142144532 + RSINE1 SINE B4 3 57 -108 4 641 224 77 26 0 chr6 7372988 7373027 -142144010 + (TTG)n Simple_repeat Simple_repeat 1 40 0 4 641 22 56 0 0 chr6 7373102 7373138 -142143899 + AT_rich Low_complexity Low_complexity 1 36 0 4 641 193 155 46 35 chr6 7373719 7373806 -142143231 + GA-rich Low_complexity Low_complexity 4 91 0 4 641 499 324 25 70 chr6 7374181 7374380 -142142657 - MLT2B3 LTR ERVL -46 508 319 4 641 760 252 75 72 chr6 7374382 7374779 -142142258 - RMER16 LTR ERVK 0 533 1 4 641 613 298 198 11 chr6 7374794 7375157 -142141880 - MLT2B5 LTR ERVL -286 431 1 4 641 637 296 51 42 chr6 7375949 7376379 -142140658 - Lx9 LINE L1 -15 7629 7196 4 641 297 376 19 47 chr6 7376513 7376728 -142140309 - RMER4B LTR ERVK -369 216 8 4 641 605 251 14 81 chr6 7376791 7377012 -142140025 - Lx9 LINE L1 -445 7199 6994 4 641 1923 248 28 12 chr6 7377852 7378427 -142138610 + L1_Rod LINE L1 5264 5847 0 4 641 296 208 13 25 chr6 7378459 7378538 -142138499 + Lx9 LINE L1 6957 7034 -610 4 641 901 284 131 3 chr6 7378570 7378913 -142138124 - Lx8 LINE L1 -128 7345 6959 4 641 599 337 54 94 chr6 7379088 7379555 -142137482 + L1MEg LINE L1 374 813 -5271 4 641 706 150 14 0 chr6 7379555 7379702 -142137335 - Lx2A1 LINE L1 -2 7006 6858 4 641 599 337 54 94 chr6 7379702 7379880 -142137157 + L1MEg LINE L1 814 993 -5091 4 641 800 181 22 0 chr6 7379996 7380134 -142136903 + B1_Mus2 SINE Alu 6 146 -1 4 641 22 0 0 0 chr6 7381417 7381439 -142135598 + AT_rich Low_complexity Low_complexity 1 22 0 4 641 16280 16 0 2 chr6 7381599 7384285 -142132752 - L1Md_T LINE L1 0 6582 3902 4 641 190 325 76 64 chr6 7384728 7384899 -142132138 - L2c LINE L2 -17 3370 3198 4 641 332 143 48 0 chr6 7385119 7385203 -142131834 + Lx3_Mus LINE L1 6922 7009 0 5 641 470 282 132 11 chr6 7385309 7385499 -142131538 + ORR1D2 LTR MaLR 158 370 0 5 641 216 0 0 0 chr6 7386932 7386956 -142130081 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 5 641 1124 88 0 13 chr6 7386966 7387115 -142129922 + B1_Mus1 SINE Alu 2 148 0 5 641 265 24 0 45 chr6 7387115 7387159 -142129878 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 5 641 212 280 96 51 chr6 7388934 7389111 -142127926 + L2a LINE L2 2910 3094 -332 5 641 258 286 28 119 chr6 7389206 7389349 -142127688 + L2a LINE L2 3249 3378 -48 5 641 475 223 98 47 chr6 7389349 7389542 -142127495 - ORSL DNA Tip100 0 275 73 5 641 22 80 0 0 chr6 7389543 7389593 -142127444 + AT_rich Low_complexity Low_complexity 1 50 0 5 641 818 279 26 82 chr6 7390363 7390452 -142126585 + MER63D DNA AcHobo 21 110 -951 5 641 1122 89 0 0 chr6 7390452 7390598 -142126439 + B1_Mm SINE Alu 2 147 0 5 641 818 279 26 82 chr6 7390598 7390851 -142126186 + MER63D DNA AcHobo 111 344 -717 5 641 21 0 0 0 chr6 7391192 7391213 -142125824 + AT_rich Low_complexity Low_complexity 1 21 0 5 641 1964 140 53 97 chr6 7391609 7392020 -142125017 - RLTR9C LTR ERVK 0 393 1 5 641 490 83 0 0 chr6 7392023 7392095 -142124942 - MMETn-int LTR ERVK -4 7402 7331 5 641 2093 170 21 50 chr6 7392311 7393095 -142123942 - MMETn-int LTR ERVK -1703 3141 2698 5 641 206 327 18 0 chr6 7393219 7393274 -142123763 - MIR SINE MIR -63 145 90 5 641 284 217 0 11 chr6 7393482 7393575 -142123462 + CT-rich Low_complexity Low_complexity 1 92 0 5 641 693 267 139 44 chr6 7393587 7393874 -142123163 - MLT1G3 LTR MaLR -288 307 3 5 641 315 0 0 0 chr6 7394100 7394135 -142122902 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 641 219 88 0 0 chr6 7394165 7394199 -142122838 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 641 587 287 109 0 chr6 7395604 7395778 -142121259 - ID_B1 SINE B4 -31 193 1 5 641 339 331 52 8 chr6 7396022 7396156 -142120881 - MER5B DNA MER1_type -1 177 38 5 641 2995 29 3 0 chr6 7396517 7396862 -142120175 - ORR1A0 LTR MaLR 0 346 1 5 641 13360 63 20 1 chr6 7396862 7398621 -142118416 - ORR1A0-int LTR MaLR 0 1792 1 5 641 2599 38 81 0 chr6 7398621 7398941 -142118096 - ORR1A0 LTR MaLR 0 346 1 5 641 215 31 31 0 chr6 7398947 7398979 -142118058 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 5 641 955 210 0 23 chr6 7400008 7400223 -142116814 + L1VL1 LINE L1 1 210 -6212 5 641 25398 71 7 7 chr6 7400221 7403816 -142113221 + L1Md_T LINE L1 1993 5586 -297 5 641 8368 40 0 0 chr6 7403816 7404812 -142112225 + L1Md_T LINE L1 5587 6582 0 5 641 5252 74 26 0 chr6 7404817 7405521 -142111516 + L1Md_F2 LINE L1 5860 6581 -1 5 641 418 44 0 0 chr6 7405805 7405915 -142111122 + L1Md_F3 LINE L1 6492 6584 0 5 641 215 189 19 0 chr6 7406613 7406666 -142110371 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 641 238 204 44 0 chr6 7406734 7406847 -142110190 + (TG)n Simple_repeat Simple_repeat 1 118 0 5 641 766 281 18 103 chr6 7406847 7407129 -142109908 - B4 SINE B4 0 292 35 5 641 1058 143 77 0 chr6 7407132 7407328 -142109709 - Lx2 LINE L1 -3 6994 6784 5 641 739 255 133 4 chr6 7407383 7407623 -142109414 - MER67C LTR ERV1 -71 640 370 5 641 338 318 129 29 chr6 7407656 7407896 -142109141 - MER67C LTR ERV1 -420 291 28 5 641 327 25 0 0 chr6 7407897 7407937 -142109100 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 641 220 368 46 53 chr6 7408011 7408163 -142108874 + MIRc SINE MIR 95 245 -23 5 641 1136 194 13 9 chr6 7408381 7408605 -142108432 - URR1B DNA MER1_type 0 225 1 5 641 358 289 113 19 chr6 7409411 7409570 -142107467 - MIR SINE MIR -81 181 8 5 641 2658 34 9 27 chr6 7410386 7410719 -142106318 + IAPLTR2b LTR ERVK 1 327 0 5 641 704 254 75 30 chr6 7410742 7410941 -142106096 - B3 SINE B2 0 216 9 5 641 441 176 9 18 chr6 7410971 7411081 -142105956 + GA-rich Low_complexity Low_complexity 3 111 0 5 641 296 127 18 0 chr6 7411081 7411136 -142105901 + (CAG)n Simple_repeat Simple_repeat 2 57 0 5 641 249 33 0 0 chr6 7412227 7412257 -142104780 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 5 641 486 0 0 0 chr6 7414970 7415024 -142102013 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 641 376 325 32 0 chr6 7417597 7417723 -142099314 + RSINE1 SINE B4 3 132 -33 5 641 411 21 0 0 chr6 7417728 7417776 -142099261 + (CATA)n Simple_repeat Simple_repeat 1 48 0 5 641 606 118 0 0 chr6 7418631 7418724 -142098313 + (GGAA)n Simple_repeat Simple_repeat 2 94 0 5 641 364 296 115 39 chr6 7418771 7418901 -142098136 + B1F2 SINE Alu 3 142 -7 5 641 388 289 10 49 chr6 7418803 7418905 -142098132 + ID_B1 SINE B4 124 221 -3 5 641 922 32 0 16 chr6 7418914 7419040 -142097997 - L1Md_F2 LINE L1 -12 6570 6447 5 641 721 335 62 39 chr6 7419716 7420350 -142096687 + Lx8 LINE L1 6824 7471 -2 5 641 1629 36 0 0 chr6 7420775 7420967 -142096070 + B2_Mm1a SINE B2 2 193 0 5 641 811 223 174 53 chr6 7420967 7421276 -142095761 - RMER16 LTR ERVK 0 533 1 5 641 4590 153 20 26 chr6 7421280 7422127 -142094910 - RMER16-int LTR ERVK -3 5403 4562 5 641 632 71 24 0 chr6 7422222 7422307 -142094730 + B1_Mus2 SINE Alu 61 147 0 5 641 224 157 20 0 chr6 7422307 7422358 -142094679 + A-rich Low_complexity Low_complexity 6 57 0 5 641 193 353 15 0 chr6 7422820 7422888 -142094149 - L2 LINE L2 -514 2905 2837 5 641 327 49 0 0 chr6 7424871 7424912 -142092125 + (CTA)n Simple_repeat Simple_repeat 1 41 0 5 641 207 0 0 0 chr6 7424912 7424935 -142092102 + (TAA)n Simple_repeat Simple_repeat 3 25 0 5 641 389 287 96 20 chr6 7425218 7425364 -142091673 + Lx9 LINE L1 6497 6653 -991 5 641 1226 279 124 18 chr6 7425392 7425906 -142091131 + Lx9 LINE L1 6771 7339 -305 5 641 275 293 97 8 chr6 7425910 7426034 -142091003 + Lx9 LINE L1 6648 6782 -862 5 641 5103 56 5 0 chr6 7426344 7426972 -142090065 + L1_Mus1 LINE L1 5937 6567 0 5 641 395 324 87 16 chr6 7427036 7427221 -142089816 - MamRep605 Unknown Unknown -134 742 545 5 641 1120 184 9 35 chr6 7427523 7427754 -142089283 + URR1B DNA MER1_type 1 225 0 5 641 183 101 61 37 chr6 7428019 7428084 -142088953 + T-rich Low_complexity Low_complexity 17 85 0 5 641 1148 75 7 0 chr6 7428084 7428230 -142088807 - B1_Mm SINE Alu 0 147 1 5 641 183 101 61 37 chr6 7428230 7428246 -142088791 + T-rich Low_complexity Low_complexity 3 16 0 5 641 22 88 0 0 chr6 7428434 7428491 -142088546 + AT_rich Low_complexity Low_complexity 1 57 0 5 641 725 274 66 18 chr6 7428523 7428809 -142088228 - MER33 DNA MER1_type 0 324 25 5 641 480 18 0 0 chr6 7429690 7429747 -142087290 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 641 22 0 0 0 chr6 7429822 7429844 -142087193 + AT_rich Low_complexity Low_complexity 1 22 0 5 641 1368 67 0 0 chr6 7430453 7430633 -142086404 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 641 4372 95 37 2 chr6 7430635 7431260 -142085777 - L1_Mus1 LINE L1 -7 6560 5914 5 641 527 106 0 0 chr6 7431260 7431345 -142085692 - L1_Mm LINE L1 -510 5373 5289 5 641 36246 31 0 0 chr6 7431353 7437794 -142079243 - L1Md_T LINE L1 0 6585 48 5 641 9515 81 18 11 chr6 7437801 7439229 -142077808 - L1_Mm LINE L1 -585 5298 3862 5 641 258 206 95 0 chr6 7439229 7439292 -142077745 + MTEa LTR MaLR 309 377 -2 5 641 441 0 0 0 chr6 7439329 7439378 -142077659 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 641 429 54 0 0 chr6 7440168 7440224 -142076813 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 641 413 335 13 7 chr6 7440459 7440609 -142076428 - MIR3 SINE MIR -5 203 53 5 641 251 141 0 40 chr6 7440862 7440936 -142076101 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 5 641 426 228 0 0 chr6 7440943 7441022 -142076015 - ID4_ SINE ID -2 81 3 5 641 539 182 57 8 chr6 7441634 7441756 -142075281 + L1_Mus2 LINE L1 6439 6566 0 5 641 361 292 16 40 chr6 7441792 7441917 -142075120 - MTEb LTR MaLR -82 297 176 5 641 286 288 0 24 chr6 7441992 7442074 -142074963 + ID4 SINE ID 3 82 -1 5 641 496 333 89 43 chr6 7442002 7442259 -142074778 + B4 SINE B4 13 281 -11 5 641 611 46 11 0 chr6 7442289 7442376 -142074661 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 641 21 0 0 0 chr6 7442485 7442506 -142074531 + AT_rich Low_complexity Low_complexity 1 21 0 5 641 210 191 0 0 chr6 7442802 7442844 -142074193 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 641 33 66 0 0 chr6 7443208 7443269 -142073768 + AT_rich Low_complexity Low_complexity 1 61 0 5 641 233 57 29 0 chr6 7443345 7443380 -142073657 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 641 2022 247 103 29 chr6 7443402 7444103 -142072934 - Lx7 LINE L1 -335 7361 6609 5 641 35 71 0 0 chr6 7445558 7445628 -142071409 + AT_rich Low_complexity Low_complexity 1 70 0 5 641 324 127 0 0 chr6 7446037 7446092 -142070945 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 641 534 152 0 0 chr6 7446082 7446174 -142070863 + (TA)n Simple_repeat Simple_repeat 1 92 0 5 641 1253 274 72 14 chr6 7446959 7447321 -142069716 - MTD LTR MaLR -20 399 17 5 641 425 325 30 15 chr6 7447468 7447668 -142069369 - ERVL-E-int LTR ERVL -3532 2135 1933 5 641 208 139 0 0 chr6 7448298 7448334 -142068703 + (A)n Simple_repeat Simple_repeat 1 36 0 5 641 21 0 0 0 chr6 7448772 7448793 -142068244 + AT_rich Low_complexity Low_complexity 1 21 0 5 641 864 129 10 40 chr6 7448807 7448956 -142068081 + B1_Mus1 SINE Alu 2 148 0 5 641 1034 144 0 6 chr6 7448956 7449137 -142067900 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 5 641 33783 44 0 4 chr6 7449227 7454461 -142062576 + L1Md_T LINE L1 278 5589 -297 5 641 8102 45 3 0 chr6 7454462 7455454 -142061583 + L1Md_T LINE L1 5591 6585 0 5 641 238 333 46 37 chr6 7456624 7456733 -142060304 - MER119 DNA MER1_type -402 181 72 5 641 370 331 40 8 chr6 7456872 7456997 -142060040 - MIR SINE MIR -20 242 114 5 641 1799 230 15 10 chr6 7458033 7458429 -142058608 - Lx5 LINE L1 0 7050 6653 5 641 601 278 187 11 chr6 7458714 7458896 -142058141 - B3 SINE B2 0 216 3 5 641 225 0 0 0 chr6 7460548 7460573 -142056464 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 641 649 307 28 38 chr6 7460684 7460897 -142056140 - B3 SINE B2 -5 211 1 6 641 3054 46 15 3 chr6 7462725 7463116 -142053921 + L1Md_F3 LINE L1 6189 6584 0 6 641 224 122 24 0 chr6 7463170 7463211 -142053826 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 641 552 265 35 35 chr6 7463277 7463449 -142053588 - LTR83 LTR ERVL -19 761 590 6 641 341 305 43 51 chr6 7463946 7464084 -142052953 + L2a LINE L2 3274 3410 -16 6 641 1668 160 9 84 chr6 7464355 7464676 -142052361 - RMER13B LTR ERVK -609 299 3 6 641 1570 269 116 16 chr6 7464676 7465573 -142051464 + L1_Mur3 LINE L1 3074 4060 -1820 6 641 3464 127 35 19 chr6 7465570 7466209 -142050828 - Lx2 LINE L1 -793 6204 5552 6 641 3355 26 15 0 chr6 7466211 7466601 -142050436 + MTA_Mm LTR MaLR 1 396 0 6 641 425 33 32 32 chr6 7466601 7466664 -142050373 + MTA_Mm-int LTR MaLR 1 63 -1035 6 641 1822 40 0 9 chr6 7466673 7466900 -142050137 - RLTRETN_Mm LTR ERVK -97 225 1 6 641 8246 52 1 0 chr6 7466900 7467945 -142049092 + MTA_Mm-int LTR MaLR 53 1098 0 6 641 3339 41 5 0 chr6 7467945 7468339 -142048698 + MTA_Mm LTR MaLR 1 396 0 6 641 4012 168 18 0 chr6 7468339 7469079 -142047958 - Lx2 LINE L1 -324 5559 4807 6 641 324 102 169 0 chr6 7469082 7469141 -142047896 - RMER19B LTR ERVK -477 425 357 6 641 590 262 31 0 chr6 7469988 7470179 -142046858 - L1_Mur3 LINE L1 -1638 4242 4046 6 641 3943 166 60 22 chr6 7470188 7470957 -142046080 - Lx2 LINE L1 0 6997 6200 6 80 2239 122 0 19 chr6 7470957 7471323 -142045714 - Lx3A LINE L1 -337 6644 6286 6 642 3585 45 7 0 chr6 7471323 7471763 -142045274 - RLTR13B1 LTR ERVK 0 893 451 6 642 364 188 0 55 chr6 7471755 7471828 -142045209 - RLTR13B1 LTR ERVK -308 495 427 6 642 20248 97 29 33 chr6 7471828 7472581 -142044456 - ETnERV3-int LTR ERVK -1048 4760 3978 6 642 252 0 0 0 chr6 7472581 7472609 -142044428 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 6 642 20248 98 30 34 chr6 7472609 7475330 -142041707 - ETnERV3-int LTR ERVK -1831 3977 485 6 642 1614 107 29 0 chr6 7475330 7475610 -142041427 - Lx3A LINE L1 -735 6246 5959 6 642 314 360 103 56 chr6 7476185 7476451 -142040586 - HAL1 LINE L1 -652 1855 1575 6 642 5609 78 5 1 chr6 7476451 7477222 -142039815 + L1Md_F2 LINE L1 5818 6582 0 6 642 314 360 103 56 chr6 7477222 7477311 -142039726 - HAL1 LINE L1 -933 1574 1482 6 642 30 0 0 0 chr6 7478680 7478710 -142038327 + AT_rich Low_complexity Low_complexity 1 30 0 6 642 1285 182 0 4 chr6 7479622 7479848 -142037189 - URR1B DNA MER1_type 0 225 1 6 642 364 143 30 81 chr6 7479857 7479956 -142037081 + Lx2 LINE L1 6904 6997 0 6 642 6497 152 143 9 chr6 7480327 7481850 -142035187 - Lx4B LINE L1 -4 7054 5259 6 642 498 192 0 0 chr6 7481852 7481951 -142035086 + Lx4B LINE L1 5166 5264 -613 6 642 1225 297 76 20 chr6 7481951 7482401 -142034636 + RMER5 LTR ERV1 49 523 -11 6 642 740 61 10 0 chr6 7482613 7482712 -142034325 - B1_Mus2 SINE Alu 0 147 48 6 642 311 147 192 40 chr6 7482656 7482755 -142034282 - RLTR25A LTR ERVK -521 582 469 6 642 1194 63 0 0 chr6 7483823 7483966 -142033071 - B1_Mm SINE Alu -2 145 3 6 642 832 315 90 53 chr6 7485369 7485956 -142031081 + Lx8 LINE L1 6859 7467 -6 6 642 240 35 0 0 chr6 7486015 7486044 -142030993 + (A)n Simple_repeat Simple_repeat 1 29 0 6 642 396 305 0 0 chr6 7486292 7486397 -142030640 - Cheshire DNA MER1_type -2140 280 176 6 642 255 255 0 52 chr6 7486397 7486455 -142030582 - Cheshire DNA MER1_type -2365 55 1 6 642 272 377 98 16 chr6 7486477 7486733 -142030304 - L2 LINE L2 -371 3048 2772 6 642 3455 129 97 33 chr6 7487286 7487974 -142029063 - RMER17A LTR ERVK -15 736 5 6 642 217 128 43 0 chr6 7488357 7488404 -142028633 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 642 610 301 21 21 chr6 7488806 7488999 -142028038 - B3A SINE B2 0 198 6 6 642 1946 175 91 16 chr6 7489063 7489447 -142027590 + MTC LTR MaLR 1 413 -8 6 642 336 48 0 0 chr6 7489468 7489510 -142027527 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 6 642 263 255 9 153 chr6 7490297 7490408 -142026629 + L2c LINE L2 3289 3383 -4 6 642 310 233 103 11 chr6 7490842 7490929 -142026108 + L1M2 LINE L1 2289 2383 -3760 6 642 21 71 0 0 chr6 7491374 7491416 -142025621 + AT_rich Low_complexity Low_complexity 1 42 0 6 642 1150 303 106 9 chr6 7491604 7492347 -142024690 + L1MB2 LINE L1 2774 3594 -2552 6 642 237 65 0 0 chr6 7492347 7492378 -142024659 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6 642 1150 303 106 9 chr6 7492378 7492609 -142024428 + L1MB2 LINE L1 3595 3841 -2305 6 642 1380 93 28 9 chr6 7492718 7492935 -142024102 + L1_Mus3 LINE L1 6417 6637 -1 6 642 3126 75 7 2 chr6 7493023 7493467 -142023570 + L1_Mus4 LINE L1 5695 6140 -496 6 642 553 255 170 42 chr6 7493467 7493708 -142023329 - RLTR10A LTR ERVK 0 411 140 6 642 3120 78 50 17 chr6 7493759 7494241 -142022796 + L1_Mus4 LINE L1 6135 6632 -4 6 642 278 211 87 174 chr6 7494346 7494407 -142022630 - MLT1A0 LTR MaLR -8 382 324 6 642 368 122 0 43 chr6 7494407 7494501 -142022536 + L1_Mus2 LINE L1 6477 6566 0 6 642 658 249 98 112 chr6 7494501 7494773 -142022264 - MLT1A0 LTR MaLR -67 323 23 6 642 207 69 0 0 chr6 7494817 7494846 -142022191 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 642 2975 55 0 0 chr6 7494867 7495234 -142021803 - L1_Mus1 LINE L1 0 6567 6201 6 642 302 318 54 70 chr6 7495251 7495711 -142021326 + L1MB2 LINE L1 4852 5304 -842 6 642 646 192 63 82 chr6 7495707 7495829 -142021208 + Lx9 LINE L1 7395 7516 -128 6 642 366 23 0 0 chr6 7495829 7495872 -142021165 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 642 646 192 63 82 chr6 7495872 7496004 -142021033 + Lx9 LINE L1 7517 7644 0 6 642 1101 296 98 47 chr6 7496021 7496136 -142020901 + L1MB2 LINE L1 5364 5466 -714 6 642 761 209 120 21 chr6 7496136 7496327 -142020710 + B3 SINE B2 1 210 -6 6 642 1311 292 103 22 chr6 7496327 7496978 -142020059 + L1MB2 LINE L1 5467 6169 -11 6 642 1946 280 56 1 chr6 7498101 7498763 -142018274 + L1MA6 LINE L1 5345 6042 -258 6 642 578 297 151 0 chr6 7498812 7499004 -142018033 + B4A SINE B4 54 274 -18 6 642 342 220 21 0 chr6 7499044 7499185 -142017852 + (CA)n Simple_repeat Simple_repeat 1 144 0 6 642 385 262 119 26 chr6 7499188 7499415 -142017622 + L1MA6 LINE L1 6053 6300 0 6 642 811 320 41 35 chr6 7499441 7499781 -142017256 - MLT2D LTR ERVL -68 346 5 6 642 253 154 198 93 chr6 7499913 7499999 -142017038 - B2_Mm2 SINE B2 -1 194 100 6 642 664 112 0 0 chr6 7500000 7500098 -142016939 - B2_Mm2 SINE B2 -97 98 1 1 642 268 278 47 40 chr6 7500229 7500379 -142016658 + HAL1b LINE L1 418 568 -1441 2 642 273 98 0 0 chr6 7500576 7500617 -142016420 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 642 1270 97 11 5 chr6 7501259 7501446 -142015591 + B2_Mm1t SINE B2 2 189 -4 4 642 371 297 146 28 chr6 7501756 7502154 -142014883 + HAL1b LINE L1 1005 1449 -560 2 642 7142 68 2 0 chr6 7502134 7503088 -142013949 + L1_Mus1 LINE L1 5612 6567 0 5 642 207 140 52 17 chr6 7503091 7503149 -142013888 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 6 642 360 309 182 65 chr6 7503165 7503549 -142013488 + L1MC5 LINE L1 6693 7121 -840 7 642 325 269 38 13 chr6 7503823 7503902 -142013135 + B1F1 SINE Alu 3 83 -66 8 642 243 0 0 0 chr6 7504033 7504060 -142012977 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 642 369 0 0 0 chr6 7507375 7507416 -142009621 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 642 416 19 19 0 chr6 7508058 7508111 -142008926 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 642 23 78 0 0 chr6 7508599 7508650 -142008387 + AT_rich Low_complexity Low_complexity 1 51 0 1 642 45 69 0 0 chr6 7510517 7510604 -142006433 + AT_rich Low_complexity Low_complexity 1 87 0 1 642 214 50 50 0 chr6 7510610 7510650 -142006387 + (TATAA)n Simple_repeat Simple_repeat 5 46 0 1 642 21 36 0 0 chr6 7510654 7510682 -142006355 + AT_rich Low_complexity Low_complexity 1 28 0 1 642 534 361 14 32 chr6 7511758 7511978 -142005059 - MER58A DNA MER1_type -8 216 1 1 642 441 304 0 0 chr6 7518263 7518365 -141998672 + PB1D7 SINE Alu 9 110 -10 1 642 764 218 0 6 chr6 7518476 7518651 -141998386 + L1Md_F LINE L1 283 456 -6063 1 642 180 0 0 0 chr6 7518654 7518674 -141998363 + (A)n Simple_repeat Simple_repeat 1 20 0 1 642 5176 152 241 6 chr6 7518674 7519944 -141997093 + L1_Mur1 LINE L1 2938 4505 -1381 2 642 635 70 0 0 chr6 7519919 7520005 -141997032 - L1_Mm LINE L1 -437 5446 5361 2 642 401 96 132 0 chr6 7520008 7520091 -141996946 + L1_Mus1 LINE L1 6473 6566 -1 2 642 402 74 0 0 chr6 7520122 7520176 -141996861 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 642 590 221 64 13 chr6 7520403 7520559 -141996478 - MER68 LTR ERVL -264 299 136 2 642 482 181 0 9 chr6 7520839 7520945 -141996092 + (TA)n Simple_repeat Simple_repeat 2 106 0 2 642 374 274 50 11 chr6 7521141 7521322 -141995715 + L1MB7 LINE L1 4604 4791 -1355 2 642 639 26 0 0 chr6 7521553 7521630 -141995407 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 642 7349 101 8 6 chr6 7521725 7523025 -141994012 - L1_Mus4 LINE L1 -629 6009 4712 2 642 4044 126 16 11 chr6 7523026 7523645 -141993392 + L1_Mus4 LINE L1 6015 6636 0 2 642 277 289 13 38 chr6 7523703 7523861 -141993176 + L1MB7 LINE L1 5119 5272 -874 2 642 23 0 0 0 chr6 7523953 7523976 -141993061 + AT_rich Low_complexity Low_complexity 1 23 0 2 642 213 154 0 0 chr6 7523995 7524034 -141993003 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 642 2958 139 29 19 chr6 7524190 7524717 -141992320 - Lx2 LINE L1 -86 5797 5266 3 642 6888 148 49 10 chr6 7524718 7525880 -141991157 + Lx2 LINE L1 5790 6996 -1 3 642 1851 92 11 17 chr6 7526007 7526294 -141990743 + Lx LINE L1 5757 6041 -613 3 642 714 282 7 35 chr6 7526307 7526590 -141990447 + L1MB7 LINE L1 5745 6019 -165 2 642 714 151 0 0 chr6 7527350 7527489 -141989548 + (TAGG)n Simple_repeat Simple_repeat 4 142 0 3 642 1334 229 102 3 chr6 7527715 7527805 -141989232 + MT2A LTR ERVL 135 237 -296 3 642 183 129 0 0 chr6 7527805 7527836 -141989201 + (CTG)n Simple_repeat Simple_repeat 3 33 0 3 642 1334 229 102 3 chr6 7527836 7528108 -141988929 + MT2A LTR ERVL 238 532 -1 3 642 305 275 174 32 chr6 7528607 7528825 -141988212 + L1MC5 LINE L1 6988 7236 -725 3 642 21 36 0 0 chr6 7530211 7530239 -141986798 + AT_rich Low_complexity Low_complexity 1 28 0 3 642 2850 110 52 7 chr6 7530239 7530678 -141986359 - Lx3A LINE L1 0 6981 6523 3 642 407 230 100 10 chr6 7530780 7530838 -141986199 + MTE2a LTR MaLR 204 297 -122 3 642 987 242 97 34 chr6 7530838 7531014 -141986023 - MTEa LTR MaLR 0 379 191 4 642 432 0 0 0 chr6 7531014 7531062 -141985975 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 642 987 236 88 27 chr6 7531062 7531227 -141985810 - MTEa LTR MaLR -189 190 13 4 642 899 45 0 0 chr6 7531230 7531342 -141985695 + MT2_Mm LTR ERVL 308 419 -74 4 642 33805 61 7 2 chr6 7531521 7536893 -141980144 + L1Md_F3 LINE L1 188 5586 -297 4 642 7978 37 16 1 chr6 7536893 7537863 -141979174 + L1Md_F3 LINE L1 5587 6570 -14 4 642 3458 155 6 20 chr6 7537863 7537884 -141979153 + Lx LINE L1 5253 5272 -611 4 642 2968 29 0 3 chr6 7537884 7538231 -141978806 + ORR1A0 LTR MaLR 1 346 0 4 642 6095 145 20 9 chr6 7538231 7539596 -141977441 + Lx LINE L1 5273 6649 -5 4 642 264 145 25 25 chr6 7539775 7539895 -141977142 + T-rich Low_complexity Low_complexity 1 120 0 4 642 26 0 0 0 chr6 7541277 7541303 -141975734 + AT_rich Low_complexity Low_complexity 1 26 0 4 642 471 306 56 28 chr6 7541466 7541613 -141975424 - MTE2a LTR MaLR -13 366 216 4 642 2347 58 26 0 chr6 7541613 7541924 -141975113 + Lx3_Mus LINE L1 6683 7001 -8 4 642 471 306 56 28 chr6 7541924 7541954 -141975083 - MTE2a LTR MaLR -164 215 184 4 642 449 365 40 7 chr6 7541942 7542091 -141974946 + MTE2b LTR MaLR 39 192 -187 5 642 1089 108 0 0 chr6 7542167 7542315 -141974722 + B1_Mus1 SINE Alu 1 148 0 5 642 402 336 16 16 chr6 7542481 7542605 -141974432 - PB1 SINE Alu -3 124 1 5 642 22 0 0 0 chr6 7542670 7542692 -141974345 + AT_rich Low_complexity Low_complexity 1 22 0 5 642 289 75 38 0 chr6 7542979 7543032 -141974005 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 642 213 132 0 0 chr6 7543904 7543942 -141973095 + (A)n Simple_repeat Simple_repeat 1 38 0 5 642 336 306 97 0 chr6 7544223 7544347 -141972690 + MER5A DNA MER1_type 6 141 -48 5 642 228 295 54 67 chr6 7544547 7544696 -141972341 + MLT1E2 LTR MaLR 216 362 -265 5 642 1225 28 7 0 chr6 7546465 7546610 -141970427 + B1_Mus1 SINE Alu 2 147 -1 5 642 210 37 0 0 chr6 7546615 7546642 -141970395 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 5 642 3082 71 24 5 chr6 7546672 7547081 -141969956 + L1Md_F2 LINE L1 6155 6571 -11 6 642 587 228 14 14 chr6 7547376 7547514 -141969523 + ID_B1 SINE B4 86 223 -1 6 642 299 299 0 86 chr6 7547743 7547871 -141969166 + PB1D10 SINE Alu 1 117 0 6 642 198 128 0 0 chr6 7548361 7548400 -141968637 + (A)n Simple_repeat Simple_repeat 1 39 0 6 642 243 0 0 0 chr6 7549441 7549468 -141967569 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 642 752 354 38 29 chr6 7550102 7550448 -141966589 - MLT1E3 LTR MaLR -11 613 265 6 642 211 195 0 24 chr6 7550482 7550524 -141966513 + G-rich Low_complexity Low_complexity 3 43 0 6 642 228 245 53 105 chr6 7551821 7551935 -141965102 - RMER12 LTR ERVK -489 833 726 6 642 736 283 16 10 chr6 7551925 7552118 -141964919 - B3A SINE B2 0 198 5 6 642 441 0 0 0 chr6 7552624 7552673 -141964364 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 642 551 85 0 12 chr6 7552781 7552864 -141964173 + (TC)n Simple_repeat Simple_repeat 2 83 0 7 642 540 214 11 167 chr6 7552886 7553060 -141963977 - B1_Mur3 SINE Alu 0 149 3 7 642 346 324 182 11 chr6 7553072 7553419 -141963618 - HAL1b LINE L1 -1091 918 513 7 642 537 16 0 0 chr6 7553823 7553885 -141963152 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 642 560 236 67 140 chr6 7553947 7554262 -141962775 - B4A SINE B4 0 292 1 7 642 4144 243 42 44 chr6 7554801 7556483 -141960554 + RMER1A Other Other 15 1029 -1 7 642 1005 92 0 0 chr6 7558350 7558492 -141958545 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 7 642 3311 66 10 0 chr6 7558573 7558969 -141958068 - MTB LTR MaLR 0 400 1 7 642 1280 68 0 0 chr6 7559276 7559423 -141957614 + B1_Mus2 SINE Alu 1 147 0 7 642 311 306 88 52 chr6 7559983 7560176 -141956861 - L1ME3B LINE L1 -66 6174 5975 7 642 572 307 62 17 chr6 7560232 7560520 -141956517 - L1ME3B LINE L1 -371 5869 5569 7 642 1259 95 78 0 chr6 7560684 7560863 -141956174 - B2_Mm2 SINE B2 -1 194 2 8 642 338 90 0 0 chr6 7560928 7560995 -141956042 - MT2A LTR ERVL -1 532 466 8 642 430 182 74 82 chr6 7561093 7561190 -141955847 - L1MC2 LINE L1 -338 5995 5900 8 642 3446 173 22 5 chr6 7561190 7561770 -141955267 - Lx2B LINE L1 0 7000 6411 8 642 430 221 189 61 chr6 7561770 7562108 -141954929 - L1MC2 LINE L1 -2096 5899 5457 8 642 4260 139 54 98 chr6 7562559 7563550 -141953487 + L1Md_F LINE L1 362 1305 -5419 8 642 998 239 13 23 chr6 7563558 7563858 -141953179 + L1VL1 LINE L1 1 297 -6125 8 642 34112 73 11 1 chr6 7563881 7569517 -141947520 + L1Md_F2 LINE L1 98 5586 -297 8 642 8470 50 8 3 chr6 7569517 7570508 -141946529 + L1Md_F2 LINE L1 5587 6582 0 8 642 5437 98 17 1 chr6 7570522 7571352 -141945685 + L1Md_F2 LINE L1 1290 2132 -3751 8 642 2277 97 139 12 chr6 7571354 7571700 -141945337 - RLTR10 LTR ERVK 0 390 1 8 642 12912 72 1 1 chr6 7571703 7573374 -141943663 + L1Md_F2 LINE L1 3916 5586 -297 8 642 7769 82 1 25 chr6 7573375 7574392 -141942645 + L1Md_F2 LINE L1 5588 6580 -2 8 642 703 257 18 18 chr6 7576156 7576326 -141940711 + B3 SINE B2 32 201 -15 8 642 693 0 0 0 chr6 7576408 7576485 -141940552 + (TC)n Simple_repeat Simple_repeat 1 77 0 9 642 621 196 9 9 chr6 7576628 7576741 -141940296 - B3 SINE B2 -102 114 2 9 642 228 253 47 112 chr6 7577985 7578092 -141938945 + Lx8 LINE L1 7374 7473 0 9 642 231 61 0 0 chr6 7578178 7578211 -141938826 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 9 642 396 355 6 44 chr6 7578211 7578370 -141938667 - ID_B1 SINE B4 -13 211 59 9 642 1425 29 0 0 chr6 7578927 7579097 -141937940 + (GGA)n Simple_repeat Simple_repeat 2 171 0 9 642 351 0 0 0 chr6 7579098 7579137 -141937900 + (GA)n Simple_repeat Simple_repeat 2 40 0 9 642 236 321 36 0 chr6 7579259 7579315 -141937722 + ID4 SINE ID 7 64 -19 9 642 234 0 0 0 chr6 7579433 7579459 -141937578 + (A)n Simple_repeat Simple_repeat 1 26 0 9 642 236 271 166 32 chr6 7579797 7579984 -141937053 - L1M5 LINE L1 -821 5325 5114 9 642 253 291 8 33 chr6 7579981 7580102 -141936935 + L1MC LINE L1 5697 5814 -2068 1 642 35306 75 1 6 chr6 7580326 7586555 -141930482 - L1Md_F2 LINE L1 -10 6572 381 1 642 859 284 9 0 chr6 7586688 7586910 -141930127 + MTE-int LTR MaLR 171 394 -1186 1 642 317 254 8 21 chr6 7586916 7587009 -141930028 + MTE-int LTR MaLR 267 337 -921 1 642 1246 303 119 59 chr6 7587053 7587726 -141929311 + MTE-int LTR MaLR 710 1427 -153 1 642 1710 27 0 11 chr6 7587726 7587914 -141929123 - B2_Mm1a SINE B2 -7 186 1 1 642 1246 303 119 59 chr6 7587914 7587987 -141929050 + MTE-int LTR MaLR 1428 1501 -79 1 642 524 283 152 54 chr6 7588035 7588259 -141928778 + MTE2a LTR MaLR 1 246 -133 1 642 1228 206 9 5 chr6 7588283 7588507 -141928530 + URR1B DNA MER1_type 1 225 0 1 642 250 275 12 12 chr6 7588507 7588588 -141928449 - L1_Mur3 LINE L1 -760 5120 5040 1 642 1427 242 50 11 chr6 7590679 7591039 -141925998 + ORR1D1 LTR MaLR 1 374 0 1 642 849 203 107 25 chr6 7591108 7591305 -141925732 - B3 SINE B2 -3 213 1 1 642 910 222 70 0 chr6 7591991 7592162 -141924875 - B3A SINE B2 -15 183 1 1 642 180 77 0 0 chr6 7592313 7592339 -141924698 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 1 642 387 106 0 0 chr6 7592362 7592428 -141924609 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 642 273 311 56 19 chr6 7592485 7592593 -141924444 + MER94 DNA AcHobo 21 132 -2 1 642 293 246 51 26 chr6 7593063 7593180 -141923857 + L1M5 LINE L1 2276 2395 -3820 1 642 28 0 0 0 chr6 7593629 7593657 -141923380 + AT_rich Low_complexity Low_complexity 1 28 0 1 642 220 269 17 25 chr6 7594496 7594614 -141922423 + GA-rich Low_complexity Low_complexity 3 119 0 1 642 186 43 0 0 chr6 7594641 7594664 -141922373 + (TTTTC)n Simple_repeat Simple_repeat 4 26 0 1 642 414 0 0 0 chr6 7594970 7595016 -141922021 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1 642 1221 82 87 6 chr6 7595990 7596173 -141920864 - MTC LTR MaLR -8 413 216 1 642 708 223 118 65 chr6 7596182 7596503 -141920534 + RLTR19-int LTR ERVK 2683 3020 -3117 1 642 313 242 203 27 chr6 7596743 7596930 -141920107 + RLTR19-int LTR ERVK 3190 3409 -2728 1 642 904 141 0 0 chr6 7596931 7597059 -141919978 + B1_Mur4 SINE Alu 22 149 -1 1 642 287 156 0 0 chr6 7597185 7597230 -141919807 + RLTR19-int LTR ERVK 3529 3573 -2564 1 642 1748 139 65 103 chr6 7597252 7597620 -141919417 + ORR1B1 LTR MaLR 41 394 0 1 642 3569 161 32 5 chr6 7597620 7598243 -141918794 + ORR1B1-int LTR MaLR 1 640 -1323 1 642 881 78 0 0 chr6 7598226 7598341 -141918696 - B1_Mus1 SINE Alu 0 148 34 1 642 2256 202 81 33 chr6 7598358 7598965 -141918072 + ORR1B1-int LTR MaLR 558 1193 -770 1 642 2885 55 28 5 chr6 7598965 7599352 -141917685 - MTA_Mm LTR MaLR 0 396 1 1 642 3761 132 15 143 chr6 7599352 7600507 -141916530 + ORR1B1-int LTR MaLR 23 1963 0 1 642 1555 212 38 53 chr6 7600567 7601016 -141916021 + RMER10A LTR ERVL 1 442 0 1 642 1903 260 24 69 chr6 7601047 7601287 -141915750 - RCHARR1 DNA MER1_type -320 654 423 1 642 2507 118 21 0 chr6 7601287 7601626 -141915411 + ORR1A1 LTR MaLR 1 346 0 1 642 1903 260 24 69 chr6 7601626 7601695 -141915342 - RCHARR1 DNA MER1_type -552 422 364 1 642 857 152 60 15 chr6 7601695 7601829 -141915208 + B1_Mur4 SINE Alu 2 141 -9 1 642 477 0 0 0 chr6 7601834 7601887 -141915150 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 80 1903 260 24 69 chr6 7601887 7602190 -141914847 - RCHARR1 DNA MER1_type -611 363 63 1 643 585 0 0 0 chr6 7603582 7603647 -141913390 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 643 421 313 35 35 chr6 7604233 7604402 -141912635 - MER5B DNA MER1_type -2 176 8 1 643 459 0 0 0 chr6 7604639 7604690 -141912347 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1 643 4386 70 0 6 chr6 7604690 7605222 -141911815 - L1_Mus1 LINE L1 -10 6557 6029 1 643 624 254 200 35 chr6 7605820 7606050 -141910987 + RMER4B LTR ERVK 344 599 -12 1 643 461 269 34 47 chr6 7606045 7606193 -141910844 - RMER15 LTR ERVL -388 187 42 1 643 808 144 43 50 chr6 7606170 7606331 -141910706 + ORR1B2 LTR MaLR 208 367 0 1 643 723 167 0 0 chr6 7607144 7607264 -141909773 + B1_Mus1 SINE Alu 29 148 0 1 643 424 324 9 0 chr6 7607549 7607657 -141909380 + PB1D10 SINE Alu 3 111 -6 1 643 21 0 0 0 chr6 7607726 7607747 -141909290 + AT_rich Low_complexity Low_complexity 1 21 0 1 643 693 161 0 17 chr6 7607759 7607879 -141909158 - B1_Mur3 SINE Alu -21 128 11 1 643 276 350 34 8 chr6 7607774 7607892 -141909145 - B4 SINE B4 -88 204 84 1 643 440 255 80 18 chr6 7608563 7608650 -141908387 + RSINE1 SINE B4 46 140 -25 1 643 446 0 19 0 chr6 7608650 7608704 -141908333 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 643 440 255 80 18 chr6 7608704 7608728 -141908309 + RSINE1 SINE B4 141 164 -1 1 643 271 167 0 29 chr6 7608729 7608797 -141908240 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 643 461 184 24 18 chr6 7608829 7608995 -141908042 + (CA)n Simple_repeat Simple_repeat 1 167 0 1 643 786 253 30 0 chr6 7609534 7609700 -141907337 + B3 SINE B2 2 172 -44 1 643 1202 225 45 162 chr6 7609831 7610250 -141906787 - MTE2a LTR MaLR -9 370 1 1 643 264 30 0 0 chr6 7610613 7610646 -141906391 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 643 1263 243 69 30 chr6 7611506 7611841 -141905196 + ORR1D2 LTR MaLR 23 370 0 1 643 197 33 33 0 chr6 7611955 7611985 -141905052 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 643 16353 20 0 1 chr6 7613056 7614924 -141902113 + L1Md_T LINE L1 3720 5586 -297 1 643 9162 6 0 0 chr6 7614924 7615920 -141901117 + L1Md_T LINE L1 5587 6582 0 1 643 9211 2 0 0 chr6 7616609 7617605 -141899432 + L1Md_A LINE L1 5587 6582 0 1 643 986 114 7 18 chr6 7617674 7617953 -141899084 + (TTTC)n Simple_repeat Simple_repeat 1 275 0 1 643 2647 40 16 0 chr6 7618050 7618371 -141898666 + L1Md_F3 LINE L1 6259 6584 0 1 643 211 95 47 23 chr6 7618665 7618708 -141898329 + T-rich Low_complexity Low_complexity 2 45 0 1 643 1831 70 18 11 chr6 7618745 7619019 -141898018 - Lx LINE L1 -4 6650 6375 1 643 236 261 0 28 chr6 7619066 7619137 -141897900 + PB1D10 SINE Alu 49 117 0 1 643 3680 225 127 8 chr6 7619194 7620091 -141896946 + RMER1A Other Other 27 1030 0 1 643 588 173 18 0 chr6 7620104 7620214 -141896823 + B1_Mur4 SINE Alu 2 113 -37 1 643 264 30 0 0 chr6 7620326 7620359 -141896678 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 643 772 150 45 64 chr6 7623145 7623302 -141893735 + Lx4A LINE L1 6816 6969 -89 1 643 242 113 12 65 chr6 7624376 7624433 -141892604 - B1F SINE Alu -10 139 54 1 643 226 338 0 0 chr6 7624655 7624729 -141892308 + MER58A DNA MER1_type 2 75 -149 1 643 288 38 36 36 chr6 7624892 7624947 -141892090 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1 643 455 215 205 8 chr6 7627543 7627665 -141889372 + B1_Mus1 SINE Alu 3 148 0 1 643 252 143 0 0 chr6 7627768 7627810 -141889227 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 1 643 321 309 90 19 chr6 7628810 7628965 -141888072 - MER106A DNA MER1_type -18 218 53 1 643 326 287 52 0 chr6 7629208 7629323 -141887714 - MER2B DNA MER2_type 0 336 216 1 643 363 311 42 0 chr6 7629325 7629444 -141887593 + Tigger1 DNA MER2_type 1 124 -2294 1 643 253 226 0 0 chr6 7629484 7629537 -141887500 + Tigger1 DNA MER2_type 2277 2329 -89 1 643 231 158 0 0 chr6 7629673 7629711 -141887326 - B1F SINE Alu -84 65 28 1 643 459 210 80 53 chr6 7630823 7630974 -141886063 - MTD LTR MaLR 0 419 265 1 643 596 276 32 26 chr6 7630971 7631161 -141885876 + MTD LTR MaLR 214 404 -15 1 643 687 201 0 0 chr6 7631538 7631687 -141885350 + (TATATG)n Simple_repeat Simple_repeat 3 151 0 1 643 1351 198 128 27 chr6 7633472 7633665 -141883372 + ORR1D1 LTR MaLR 1 209 -165 1 643 1508 27 48 21 chr6 7633665 7633853 -141883184 + B2_Mm1a SINE B2 1 193 0 1 643 1351 198 128 27 chr6 7633853 7633996 -141883041 + ORR1D1 LTR MaLR 210 371 -3 1 643 345 301 37 93 chr6 7634618 7634864 -141882173 + B4A SINE B4 1 232 -60 1 643 319 200 0 0 chr6 7634866 7634921 -141882116 + PB1D9 SINE Alu 6 60 -60 1 643 208 222 0 0 chr6 7635499 7635535 -141881502 + polypurine Low_complexity Low_complexity 2 37 0 1 643 358 326 89 86 chr6 7635753 7635888 -141881149 - MER2 DNA MER2_type -32 313 177 1 643 1172 63 0 0 chr6 7635888 7636030 -141881007 + B1_Mus1 SINE Alu 2 143 -5 1 643 358 326 89 86 chr6 7636030 7636196 -141880841 - MER2 DNA MER2_type -169 176 11 1 643 543 215 113 6 chr6 7636803 7636962 -141880075 - B2_Mm2 SINE B2 -19 176 1 1 643 504 0 0 0 chr6 7637879 7637935 -141879102 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 643 187 29 56 28 chr6 7638031 7638067 -141878970 + (TTATA)n Simple_repeat Simple_repeat 2 38 0 1 643 227 279 76 12 chr6 7640215 7640233 -141876804 + PB1D10 SINE Alu 2 43 -77 1 643 234 208 37 19 chr6 7640233 7640287 -141876750 + ID_B1 SINE B4 107 161 -63 1 643 227 279 76 12 chr6 7640287 7640314 -141876723 + PB1D10 SINE Alu 44 113 -7 1 643 935 215 47 9 chr6 7640853 7641064 -141875973 + Lx6 LINE L1 6912 7130 -330 1 643 730 200 126 20 chr6 7641064 7641263 -141875774 + URR1B DNA MER1_type 1 220 -5 1 643 1268 231 51 42 chr6 7641269 7641604 -141875433 + Lx6 LINE L1 7123 7460 0 1 643 231 218 114 13 chr6 7642113 7642192 -141874845 - MER33 DNA MER1_type -197 127 41 1 643 222 37 0 0 chr6 7642465 7642492 -141874545 + (A)n Simple_repeat Simple_repeat 1 27 0 1 643 215 132 0 26 chr6 7642938 7642977 -141874060 + (CCCCG)n Simple_repeat Simple_repeat 4 41 0 1 643 183 42 0 0 chr6 7643535 7643559 -141873478 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 643 320 233 78 0 chr6 7643867 7643957 -141873080 + ID_B1 SINE B4 90 186 -38 1 643 237 159 0 0 chr6 7643962 7644006 -141873031 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 643 189 0 0 0 chr6 7644036 7644057 -141872980 + (A)n Simple_repeat Simple_repeat 1 21 0 1 643 223 148 49 0 chr6 7646176 7646204 -141870833 + polypurine Low_complexity Low_complexity 4 31 0 1 643 261 0 0 0 chr6 7646204 7646233 -141870804 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1 643 223 148 49 0 chr6 7646233 7646265 -141870772 + polypurine Low_complexity Low_complexity 32 65 0 1 643 254 288 0 24 chr6 7646266 7646348 -141870689 + GA-rich Low_complexity Low_complexity 1 80 0 1 643 1591 265 37 43 chr6 7648828 7649313 -141867724 + Lx7 LINE L1 6798 7279 -417 1 643 189 0 0 0 chr6 7649323 7649344 -141867693 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 643 644 194 0 7 chr6 7649345 7649485 -141867552 + GA-rich Low_complexity Low_complexity 3 141 0 2 643 221 262 0 0 chr6 7649488 7649549 -141867488 + T-rich Low_complexity Low_complexity 1 61 0 2 643 2218 186 33 12 chr6 7649665 7650084 -141866953 - Lx5 LINE L1 -1 7049 6622 2 643 36805 48 8 0 chr6 7650108 7655442 -141861595 + L1Md_T LINE L1 268 5585 -298 2 643 8505 37 0 0 chr6 7655443 7656439 -141860598 + L1Md_T LINE L1 5587 6582 0 2 643 815 350 97 39 chr6 7656853 7657521 -141859516 + MER21B LTR ERV1 12 718 -145 2 643 186 43 0 0 chr6 7657559 7657582 -141859455 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 643 293 208 0 0 chr6 7658345 7658398 -141858639 - tRNA-Ala-GCA tRNA tRNA -21 54 2 2 643 409 213 13 0 chr6 7658876 7658951 -141858086 + ID4 SINE ID 2 77 -6 2 643 324 0 0 0 chr6 7659883 7659919 -141857118 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 643 1841 47 8 13 chr6 7660062 7660301 -141856736 + L1_Mus2 LINE L1 6329 6566 0 2 643 1368 154 121 59 chr6 7662032 7662371 -141854666 + RLTR41 LTR ERV1 87 446 0 2 643 607 185 7 75 chr6 7662371 7662517 -141854520 + B1_Mus1 SINE Alu 13 148 0 2 643 225 0 0 0 chr6 7662517 7662542 -141854495 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 2 643 7655 60 8 11 chr6 7663299 7664280 -141852757 + RLTR13A3 LTR ERVK 1 978 0 2 643 302 319 37 12 chr6 7664646 7664803 -141852234 - B4 SINE B4 -18 274 78 2 643 765 89 16 8 chr6 7665122 7665247 -141851790 + (GAAA)n Simple_repeat Simple_repeat 1 126 0 2 643 910 68 7 0 chr6 7665251 7665398 -141851639 + RMER17B LTR ERVK 316 463 -495 2 643 207 271 0 0 chr6 7665398 7665427 -141851610 + A-rich Low_complexity Low_complexity 3 31 0 2 643 288 0 0 0 chr6 7665427 7665459 -141851578 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 643 207 271 0 0 chr6 7665459 7665477 -141851560 + A-rich Low_complexity Low_complexity 32 49 0 2 643 195 170 0 0 chr6 7665480 7665527 -141851510 + GA-rich Low_complexity Low_complexity 4 50 0 2 643 188 119 0 63 chr6 7666138 7666201 -141850836 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 643 2266 105 108 23 chr6 7666790 7667180 -141849857 - RLTR23 LTR ERV1 -7 423 1 2 643 1831 107 28 28 chr6 7667507 7667824 -141849213 - RLTR9F LTR ERVK -4 411 95 2 643 4099 174 80 42 chr6 7667825 7669103 -141847934 - ETnERV2-int LTR ERVK -4196 3210 812 2 643 2966 63 200 9 chr6 7669103 7669533 -141847504 + RLTR1B LTR ERV1 1 512 0 2 643 67700 20 4 0 chr6 7669533 7677060 -141839977 + MMERGLN-int LTR ERV1 1 7556 0 2 643 2979 61 200 9 chr6 7677060 7677490 -141839547 + RLTR1B LTR ERV1 1 512 0 2 643 1676 88 176 56 chr6 7677490 7677813 -141839224 - ETnERV2-int LTR ERVK -5962 1444 1083 2 643 288 53 0 0 chr6 7677813 7677851 -141839186 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 2 643 1088 249 37 60 chr6 7677854 7678235 -141838802 - ETnERV2-int LTR ERVK -2931 383 12 2 643 683 65 0 0 chr6 7678263 7678355 -141838682 - RLTR9F LTR ERVK -323 92 1 2 643 210 37 0 0 chr6 7678763 7678790 -141838247 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 643 1271 26 7 0 chr6 7678790 7678944 -141838093 + (GA)n Simple_repeat Simple_repeat 1 156 0 2 643 1457 157 81 30 chr6 7679018 7679338 -141837699 + MTC LTR MaLR 1 368 -51 2 643 6876 109 18 12 chr6 7679338 7680355 -141836682 + RLTR13D5 LTR ERVK 1 1023 0 2 643 1193 212 164 35 chr6 7680355 7680405 -141836632 + MTC LTR MaLR 369 418 -1 2 643 380 304 52 28 chr6 7680591 7680802 -141836235 - MER110A LTR ERV1 -74 394 179 2 643 599 312 103 41 chr6 7680802 7681205 -141835832 - MLT1D LTR MaLR 0 467 58 2 643 248 278 102 25 chr6 7681236 7681308 -141835729 + MER34A LTR ERV1 33 105 -466 2 643 324 111 0 0 chr6 7681308 7681362 -141835675 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 643 248 278 102 25 chr6 7681362 7681407 -141835630 + MER34A LTR ERV1 106 159 -412 2 643 1128 63 0 20 chr6 7681448 7681594 -141835443 - B1_Mus1 SINE Alu -5 143 1 2 643 2177 178 64 18 chr6 7682373 7682423 -141834614 + RMER5 LTR ERV1 13 70 -464 2 643 320 0 25 0 chr6 7682423 7682463 -141834574 + (TGGGGG)n Simple_repeat Simple_repeat 6 46 0 2 643 2177 178 64 18 chr6 7682463 7682911 -141834126 + RMER5 LTR ERV1 71 533 -1 2 643 1347 254 116 29 chr6 7683256 7683808 -141833229 + L1MB7 LINE L1 5554 6153 -31 2 643 2029 180 46 8 chr6 7683994 7684386 -141832651 + MTB_Mm LTR MaLR 1 407 0 2 643 355 203 0 0 chr6 7684520 7684589 -141832448 + MER58B DNA MER1_type 140 208 -133 2 643 365 284 258 0 chr6 7684607 7684801 -141832236 - MTD LTR MaLR 0 419 176 2 643 929 71 0 0 chr6 7684782 7684908 -141832129 + B1_Mus1 SINE Alu 23 148 0 2 643 222 118 0 0 chr6 7685126 7685160 -141831877 + (TCC)n Simple_repeat Simple_repeat 3 36 0 2 643 355 197 53 0 chr6 7685163 7685239 -141831798 - B1F2 SINE Alu -69 80 1 2 643 287 296 87 22 chr6 7686378 7686561 -141830476 + Charlie23a DNA MER1_type 110 304 -35 2 643 767 209 0 14 chr6 7686571 7686712 -141830325 + B1_Mus1 SINE Alu 2 140 -8 2 643 964 286 30 3 chr6 7686750 7687048 -141829989 - L1MB1 LINE L1 0 6168 5863 2 643 3725 118 40 19 chr6 7687954 7688599 -141828438 - RLTR13D5 LTR ERVK -400 623 1 2 643 1413 214 46 18 chr6 7688817 7689146 -141827891 + MTC LTR MaLR 2 339 -82 2 643 322 223 204 0 chr6 7689176 7689279 -141827758 - RSINE1 SINE B4 -31 134 11 2 643 288 0 0 0 chr6 7689469 7689501 -141827536 + (A)n Simple_repeat Simple_repeat 1 32 0 2 643 291 54 0 0 chr6 7689842 7689879 -141827158 + (A)n Simple_repeat Simple_repeat 1 37 0 2 643 468 0 0 0 chr6 7690101 7690153 -141826884 + (TTTTG)n Simple_repeat Simple_repeat 3 54 0 2 643 588 24 0 12 chr6 7690969 7691052 -141825985 - L1Md_F2 LINE L1 -1 6581 6500 2 643 544 240 99 42 chr6 7691199 7691412 -141825625 + RLTR42-int LTR ERVK 1108 1332 -4190 2 643 309 145 0 0 chr6 7691412 7691474 -141825563 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 643 355 122 0 86 chr6 7691489 7691570 -141825467 + RLTR19-int LTR ERVK 886 959 -5178 2 643 390 170 0 99 chr6 7691749 7691860 -141825177 + RLTR19-int LTR ERVK 1041 1140 -4997 2 643 320 245 74 11 chr6 7691869 7691964 -141825073 + MTC-int LTR MaLR 449 549 -709 2 643 922 268 53 88 chr6 7691967 7692385 -141824652 + MTC-int LTR MaLR 797 1199 -59 2 643 330 194 30 0 chr6 7692716 7692783 -141824254 + RLTR19-int LTR ERVK 2346 2414 -3723 2 643 326 243 9 80 chr6 7693149 7693261 -141823776 - RMER13A LTR ERVK -379 529 426 2 643 441 84 0 0 chr6 7693266 7693337 -141823700 + (TTTTG)n Simple_repeat Simple_repeat 1 71 0 2 643 898 63 48 0 chr6 7693338 7693464 -141823573 - B1_Mus2 SINE Alu -7 140 9 2 643 957 247 105 66 chr6 7693471 7693852 -141823185 - RMER13A LTR ERVK -464 396 1 2 643 293 239 0 42 chr6 7693854 7693913 -141823124 + MYSERV-int LTR ERVK 5613 5669 -881 2 643 7045 66 22 10 chr6 7693913 7694831 -141822206 - RLTR13B3 LTR ERVK 0 929 1 2 643 293 239 0 42 chr6 7694831 7694867 -141822170 + MYSERV-int LTR ERVK 5670 5703 -847 2 643 2311 215 55 103 chr6 7694891 7694996 -141822041 + RLTR19-int LTR ERVK 2481 2585 -3552 2 643 849 181 31 47 chr6 7694996 7695187 -141821850 + B2_Mm2 SINE B2 1 188 -7 2 643 2311 215 55 103 chr6 7695187 7695827 -141821210 + RLTR19-int LTR ERVK 2586 3190 -2947 2 643 1495 193 89 65 chr6 7695883 7696602 -141820435 + RLTR19-int LTR ERVK 3696 4381 -1756 2 643 29 0 0 0 chr6 7697167 7697196 -141819841 + AT_rich Low_complexity Low_complexity 1 29 0 2 643 415 299 39 0 chr6 7697396 7697523 -141819514 + B1F1 SINE Alu 10 141 -8 2 643 822 264 111 40 chr6 7697899 7698277 -141818760 + LTR40b LTR ERVL 56 460 -2 2 643 501 263 58 26 chr6 7699388 7699579 -141817458 + MLT2C2 LTR ERVL 1 197 -267 2 643 714 78 0 0 chr6 7700605 7700707 -141816330 + (CATATA)n Simple_repeat Simple_repeat 4 105 0 2 643 513 293 21 72 chr6 7700855 7701134 -141815903 + Lx7 LINE L1 5635 5899 -1797 2 643 445 176 241 0 chr6 7701510 7701618 -141815419 - RMER10A LTR ERVL 0 398 265 2 643 597 72 0 0 chr6 7701621 7701704 -141815333 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 643 857 172 42 16 chr6 7701704 7701893 -141815144 - RMER10A LTR ERVL -248 194 1 2 643 2206 162 94 60 chr6 7703848 7704360 -141812677 + RLTR24 LTR ERV1 1 529 0 2 643 1480 49 33 0 chr6 7704648 7704832 -141812205 + B2_Mm2 SINE B2 1 190 -5 2 643 646 47 0 0 chr6 7704876 7704961 -141812076 + B1_Mus1 SINE Alu 1 85 -63 2 643 317 214 0 97 chr6 7704878 7704971 -141812066 + MT2B2 LTR ERVL 167 250 -334 2 643 2295 159 37 15 chr6 7705353 7705762 -141811275 - MTC LTR MaLR 0 421 4 2 643 252 212 68 34 chr6 7705956 7706044 -141810993 + ORR1E LTR MaLR 269 359 0 2 643 233 244 12 37 chr6 7706104 7706185 -141810852 - Charlie23a DNA MER1_type -151 188 110 2 643 2622 117 14 0 chr6 7706561 7706930 -141810107 - Lx2 LINE L1 -359 6638 6265 2 643 2734 97 0 23 chr6 7706930 7707321 -141809716 + Lx2 LINE L1 6616 6997 0 2 643 186 272 156 42 chr6 7707536 7707632 -141809405 + MIRb SINE MIR 36 142 -126 2 643 496 374 71 21 chr6 7709327 7709709 -141807328 + ERVL-E-int LTR ERVL 656 1056 -4611 2 643 286 287 148 0 chr6 7710096 7710204 -141806833 + ERVL-E-int LTR ERVL 1686 1809 -3905 2 643 566 287 42 32 chr6 7710252 7710468 -141806569 + MER20 DNA MER1_type 2 219 0 2 643 21 0 0 0 chr6 7710639 7710660 -141806377 + AT_rich Low_complexity Low_complexity 1 21 0 2 643 320 231 94 52 chr6 7711039 7711135 -141805902 - B1_Mus1 SINE Alu -48 100 1 2 643 2273 285 68 27 chr6 7711202 7711982 -141805055 - Lx7 LINE L1 -391 7305 6494 2 643 12524 98 6 14 chr6 7711980 7713446 -141803591 - Lx LINE L1 -1 6653 5268 2 643 1197 68 0 0 chr6 7713446 7713594 -141803443 - B1_Mus1 SINE Alu 0 148 1 2 643 12524 157 13 36 chr6 7713594 7715165 -141801872 - Lx LINE L1 -616 5267 3670 2 643 5303 91 32 13 chr6 7715164 7716548 -141800489 - L1VL2 LINE L1 -1921 1694 283 2 643 332 280 211 5 chr6 7717057 7717247 -141799790 - MER106A DNA MER1_type -7 229 1 2 643 1589 226 48 30 chr6 7717630 7718027 -141799010 + MTD LTR MaLR 1 404 -15 2 643 2163 256 239 24 chr6 7718018 7719048 -141797989 + MTD-int LTR MaLR 8 1258 0 2 643 8209 39 1 28 chr6 7719060 7719306 -141797731 - L1Md_F3 LINE L1 0 6584 6348 2 643 3301 49 12 96 chr6 7719306 7719825 -141797212 + IAPLTR2_Mm LTR ERVK 1 475 0 2 643 12058 49 3 11 chr6 7719825 7721796 -141795241 - L1Md_F3 LINE L1 -237 6347 4390 2 643 398 215 21 0 chr6 7721798 7721891 -141795146 + MTD LTR MaLR 2 96 -323 2 643 227 304 160 0 chr6 7724322 7724447 -141792590 + MER5A DNA MER1_type 18 162 -27 2 643 247 315 15 7 chr6 7725507 7725602 -141791435 + ORR1D2 LTR MaLR 282 405 -14 2 643 6540 38 0 0 chr6 7725679 7726440 -141790597 - L1Md_F2 LINE L1 0 6582 5822 2 643 24 0 0 0 chr6 7726548 7726572 -141790465 + AT_rich Low_complexity Low_complexity 1 24 0 2 643 342 28 54 40 chr6 7726659 7726733 -141790304 + (CAAAA)n Simple_repeat Simple_repeat 2 76 0 3 643 385 297 25 25 chr6 7726815 7726974 -141790063 - MER58A DNA MER1_type -3 221 63 3 643 299 65 22 0 chr6 7728218 7728264 -141788773 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 643 953 290 60 21 chr6 7729970 7730333 -141786704 - MLT1F2 LTR MaLR -139 421 11 3 643 4505 12 2 0 chr6 7730988 7731480 -141785557 - MT2_Mm LTR ERVL 0 493 1 3 643 346 244 0 91 chr6 7731517 7731715 -141785322 + (GGGTG)n Simple_repeat Simple_repeat 1 180 0 3 643 308 244 6 70 chr6 7731733 7731905 -141785132 + (GGGTG)n Simple_repeat Simple_repeat 1 161 0 3 643 402 227 6 76 chr6 7731923 7732403 -141784634 + (GGGTG)n Simple_repeat Simple_repeat 1 446 0 3 644 340 362 0 0 chr6 7733616 7733710 -141783327 + (CCCCAG)n Simple_repeat Simple_repeat 3 96 0 3 644 2356 147 86 96 chr6 7734656 7735189 -141781848 - RLTR24 LTR ERV1 -1 528 1 3 644 483 18 0 0 chr6 7735438 7735494 -141781543 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 644 352 297 162 14 chr6 7735997 7736219 -141780818 + B4A SINE B4 15 269 -23 3 644 350 82 22 66 chr6 7736229 7736320 -141780717 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 3 644 333 0 0 0 chr6 7736322 7736359 -141780678 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 644 222 357 7 53 chr6 7736845 7736996 -141780041 + L2c LINE L2 3244 3387 0 3 644 701 293 28 34 chr6 7737132 7737427 -141779610 + ORR1E LTR MaLR 1 286 -84 3 644 279 0 0 0 chr6 7737680 7737711 -141779326 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 644 336 256 162 0 chr6 7738124 7738241 -141778796 - B1F SINE Alu -8 141 6 3 644 259 326 102 36 chr6 7738241 7738254 -141778783 - ID_B1 SINE B4 -1 181 78 3 644 28 0 0 0 chr6 7738586 7738614 -141778423 + AT_rich Low_complexity Low_complexity 1 28 0 3 644 623 108 10 0 chr6 7738742 7738844 -141778193 + (GGA)n Simple_repeat Simple_repeat 3 105 0 3 644 274 151 57 4 chr6 7739733 7739804 -141777233 + MLT1D LTR MaLR 448 505 0 3 644 7857 102 18 9 chr6 7740556 7740593 -141776444 - Lx2 LINE L1 -192 6805 6769 3 644 630 0 0 0 chr6 7740593 7740663 -141776374 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 644 7857 102 18 9 chr6 7740663 7741761 -141775276 - Lx2 LINE L1 -229 6768 5660 3 644 1220 68 99 0 chr6 7741846 7742008 -141775029 + B2_Mm2 SINE B2 2 179 -16 3 644 489 34 0 0 chr6 7742008 7742067 -141774970 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 644 802 155 21 7 chr6 7742865 7743008 -141774029 - B1_Mur4 SINE Alu -1 149 5 3 644 903 204 99 0 chr6 7743132 7743323 -141773714 - B3 SINE B2 -6 210 1 3 644 189 0 0 0 chr6 7743378 7743399 -141773638 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 3 644 665 253 24 96 chr6 7743443 7743539 -141773498 - B4 SINE B4 -43 249 163 3 644 681 24 0 0 chr6 7743539 7743622 -141773415 + (CA)n Simple_repeat Simple_repeat 1 83 0 3 644 665 253 24 96 chr6 7743622 7743774 -141773263 - B4 SINE B4 -130 162 19 3 644 318 302 39 32 chr6 7744591 7744745 -141772292 - L1MA6 LINE L1 -26 6274 6120 3 644 1171 43 0 0 chr6 7744899 7745037 -141772000 - B1_Mus2 SINE Alu -9 138 1 3 644 2995 26 3 11 chr6 7745148 7745497 -141771540 - ORR1A0 LTR MaLR 0 346 1 3 644 13808 48 36 1 chr6 7745497 7747228 -141769809 - ORR1A0-int LTR MaLR 0 1792 1 3 644 3033 23 3 11 chr6 7747228 7747577 -141769460 - ORR1A0 LTR MaLR 0 346 1 3 644 259 198 56 44 chr6 7747745 7747814 -141769223 - Lx9 LINE L1 -61 7583 7510 3 644 510 103 0 0 chr6 7747814 7747892 -141769145 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 644 351 213 660 7 chr6 7747892 7748021 -141769016 - Lx9 LINE L1 -135 7509 7301 3 644 1805 277 55 49 chr6 7748119 7748311 -141768726 - Lx8 LINE L1 -262 7211 7015 3 644 1349 91 21 11 chr6 7748311 7748500 -141768537 - B2_Mm2 SINE B2 -3 192 2 3 644 1805 277 55 49 chr6 7748500 7748746 -141768291 - Lx8 LINE L1 -459 7014 6773 3 644 1999 107 12 51 chr6 7748746 7749081 -141767956 - RLTRETN_Mm LTR ERVK 0 322 1 3 644 1805 260 181 24 chr6 7749081 7749587 -141767450 - Lx8 LINE L1 -701 6772 6184 3 644 283 312 61 53 chr6 7750230 7750362 -141766675 + MLT1J LTR MaLR 31 163 -349 3 644 451 207 34 51 chr6 7750545 7750662 -141766375 + B1_Mur2 SINE Alu 35 149 0 3 644 571 322 83 46 chr6 7750762 7751110 -141765927 + LTR82A LTR ERVL 340 700 -172 3 644 7551 78 1 1 chr6 7751361 7752793 -141764244 + L1_Mus2 LINE L1 5133 6565 -1 3 644 563 195 8 0 chr6 7755314 7755437 -141761600 + GA-rich Low_complexity Low_complexity 2 125 0 3 644 329 232 140 53 chr6 7755455 7755605 -141761432 + L1ME2 LINE L1 5900 6062 -102 3 644 386 256 43 0 chr6 7755672 7755789 -141761248 + L1ME1 LINE L1 6052 6173 -6 3 644 1586 257 60 3 chr6 7755939 7756325 -141760712 + MTD LTR MaLR 6 413 -6 3 644 180 0 0 0 chr6 7756796 7756816 -141760221 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 3 644 1248 34 0 0 chr6 7756820 7756967 -141760070 - B1_Mus2 SINE Alu 0 147 1 3 644 500 301 145 4 chr6 7758448 7758675 -141758362 + MLT1C LTR MaLR 7 265 -202 3 644 25 0 0 0 chr6 7759330 7759355 -141757682 + AT_rich Low_complexity Low_complexity 1 25 0 3 644 243 274 0 0 chr6 7759426 7759488 -141757549 - MLT1H LTR MaLR -43 405 344 3 644 379 181 158 14 chr6 7761146 7761292 -141755745 - Lx9 LINE L1 0 7644 7478 3 644 1033 266 122 35 chr6 7761432 7761865 -141755172 + Lx9 LINE L1 6957 7427 -217 3 644 372 22 0 0 chr6 7761906 7761951 -141755086 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 644 441 0 0 0 chr6 7762071 7762120 -141754917 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 644 326 294 103 38 chr6 7762266 7762450 -141754587 - MLT1H LTR MaLR -328 221 26 3 644 211 350 56 0 chr6 7762823 7762966 -141754071 - MIR SINE MIR -88 174 24 3 644 281 305 95 32 chr6 7763066 7763300 -141753737 + MIRb SINE MIR 1 250 -18 3 644 480 111 0 0 chr6 7763739 7763811 -141753226 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 644 908 70 0 8 chr6 7763811 7763941 -141753096 + (GGAA)n Simple_repeat Simple_repeat 4 132 0 3 644 1486 194 81 44 chr6 7764505 7764889 -141752148 + Lx5 LINE L1 6632 7029 -21 3 644 363 220 101 50 chr6 7764894 7765033 -141752004 + Lx5 LINE L1 6905 7050 0 3 644 521 277 33 20 chr6 7765289 7765440 -141751597 - L2a LINE L2 -2 3424 3272 3 644 1563 133 42 64 chr6 7766799 7767159 -141749878 + RLTR15 LTR ERVK 1 352 -7 3 644 425 314 49 45 chr6 7767336 7767600 -141749437 + L2 LINE L2 2375 2639 -780 3 644 672 13 0 0 chr6 7768168 7768245 -141748792 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 644 192 77 0 0 chr6 7768257 7768283 -141748754 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 644 228 278 0 0 chr6 7768283 7768348 -141748689 + GA-rich Low_complexity Low_complexity 1 65 0 3 644 201 74 0 0 chr6 7768726 7768753 -141748284 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 3 644 315 328 127 19 chr6 7772210 7772533 -141744504 + L1MEg LINE L1 95 452 -5632 3 644 635 284 31 10 chr6 7772726 7772918 -141744119 - MTEb LTR MaLR -7 372 177 3 644 447 19 0 0 chr6 7774655 7774707 -141742330 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 644 572 277 41 35 chr6 7774723 7774895 -141742142 - B3A SINE B2 -25 173 1 3 644 227 220 0 20 chr6 7775045 7775096 -141741941 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 3 644 289 259 0 0 chr6 7775101 7775159 -141741878 + MER2B DNA MER2_type 8 65 -271 3 644 312 48 0 0 chr6 7775184 7775226 -141741811 + (TATG)n Simple_repeat Simple_repeat 1 42 0 3 644 449 328 15 0 chr6 7775244 7775375 -141741662 - RSINE1 SINE B4 -29 136 4 3 644 3632 109 56 11 chr6 7775669 7776224 -141740813 + Lx2 LINE L1 6412 6991 -6 3 644 320 164 18 18 chr6 7776230 7776342 -141740695 + (TA)n Simple_repeat Simple_repeat 1 112 0 3 644 24 53 0 0 chr6 7776475 7776513 -141740524 + AT_rich Low_complexity Low_complexity 1 38 0 3 644 1061 202 27 9 chr6 7776780 7777000 -141740037 + URR1B DNA MER1_type 2 225 0 3 644 1302 59 0 0 chr6 7777025 7777366 -141739671 + (CA)n Simple_repeat Simple_repeat 1 341 0 3 644 201 175 0 0 chr6 7777375 7777415 -141739622 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 3 644 994 299 110 12 chr6 7777516 7777915 -141739122 - Lx8 LINE L1 -155 7318 6881 3 644 249 236 41 14 chr6 7778075 7778148 -141738889 + ORR1E LTR MaLR 269 343 -16 3 644 329 302 0 0 chr6 7778162 7778291 -141738746 - L1M4 LINE L1 -401 5782 5654 3 644 33 0 0 0 chr6 7778294 7778327 -141738710 + AT_rich Low_complexity Low_complexity 1 33 0 3 644 302 302 36 102 chr6 7778382 7778548 -141738489 + ORR1E LTR MaLR 39 193 -166 3 644 255 255 78 43 chr6 7778570 7778685 -141738352 + ORR1E LTR MaLR 252 370 -9 3 644 439 296 58 5 chr6 7778727 7778951 -141738086 - L1M4 LINE L1 -611 5573 5338 3 644 645 250 62 27 chr6 7779092 7779351 -141737686 - L1MC1 LINE L1 -187 6146 5879 3 644 204 40 0 0 chr6 7779351 7779376 -141737661 + (T)n Simple_repeat Simple_repeat 1 25 0 3 644 440 289 93 104 chr6 7779474 7779744 -141737293 - ORR1E LTR MaLR -17 342 76 3 644 370 336 8 8 chr6 7780237 7780354 -141736683 - PB1D7 SINE Alu -1 119 3 3 644 269 298 204 61 chr6 7780354 7780369 -141736668 - ID_B1 SINE B4 0 224 74 3 644 369 292 0 0 chr6 7780624 7780696 -141736341 + RSINE1 SINE B4 78 149 -16 3 644 856 327 121 0 chr6 7781602 7781975 -141735062 + Tigger7 DNA MER2_type 55 472 -2019 3 644 729 239 128 0 chr6 7781964 7782182 -141734855 + Tigger7 DNA MER2_type 2239 2484 -7 3 644 23 78 0 0 chr6 7783108 7783159 -141733878 + AT_rich Low_complexity Low_complexity 1 51 0 3 644 700 316 181 40 chr6 7783580 7784061 -141732976 - MLT1F1 LTR MaLR -9 560 12 3 644 696 191 0 56 chr6 7784163 7784307 -141732730 - B1_Mur1 SINE Alu -12 137 2 3 644 301 302 30 45 chr6 7784456 7784588 -141732449 - MLT1J LTR MaLR -38 474 345 3 644 242 346 69 62 chr6 7784666 7784940 -141732097 - ORR1E LTR MaLR -7 352 77 3 644 33460 82 8 7 chr6 7785888 7792042 -141724995 - L1Md_F2 LINE L1 -3 6579 422 3 644 651 78 267 0 chr6 7794029 7794145 -141722892 - B1_Mm SINE Alu 0 147 1 3 644 201 39 0 0 chr6 7794655 7794681 -141722356 + (CTG)n Simple_repeat Simple_repeat 3 28 0 4 644 231 61 0 0 chr6 7794809 7794842 -141722195 + (CCG)n Simple_repeat Simple_repeat 1 33 0 4 644 45 79 0 0 chr6 7795151 7795252 -141721785 + GC_rich Low_complexity Low_complexity 1 101 0 4 644 27 0 0 0 chr6 7796712 7796739 -141720298 + AT_rich Low_complexity Low_complexity 1 27 0 4 644 186 242 113 0 chr6 7797397 7797459 -141719578 + MER5A DNA MER1_type 8 76 -113 4 644 321 305 126 44 chr6 7797594 7797958 -141719079 - L2 LINE L2 -357 3062 2669 4 644 379 188 94 0 chr6 7798139 7798224 -141718813 - B4A SINE B4 -31 261 169 4 644 216 0 0 0 chr6 7798277 7798301 -141718736 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 644 462 353 33 19 chr6 7798359 7798570 -141718467 + MER20 DNA MER1_type 1 214 -5 4 644 307 210 111 0 chr6 7800595 7800676 -141716361 - LTR65 LTR ERV1 -291 378 289 4 644 258 230 280 0 chr6 7800922 7800948 -141716089 - ID_B1 SINE B4 -9 215 88 4 644 267 233 54 14 chr6 7800948 7801022 -141716015 - PB1D10 SINE Alu -34 83 7 4 644 273 218 6 291 chr6 7801097 7801272 -141715765 + B1_Mus2 SINE Alu 2 126 -23 4 644 324 70 0 0 chr6 7801280 7801323 -141715714 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 644 351 0 0 0 chr6 7801364 7801403 -141715634 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 644 345 24 0 0 chr6 7801532 7801574 -141715463 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 644 548 297 128 27 chr6 7801597 7802074 -141714963 - L1MB3 LINE L1 -41 6142 5618 4 644 469 282 69 0 chr6 7802081 7802212 -141714825 - B1_Mur1 SINE Alu -7 142 3 4 644 374 274 225 11 chr6 7802229 7802484 -141714553 - L1MB3 LINE L1 -588 5596 5292 4 644 316 319 0 92 chr6 7802707 7802838 -141714199 - L1MB3 LINE L1 -1538 4608 4490 4 644 515 184 79 22 chr6 7802874 7803052 -141713985 - L1M4c LINE L1 -3822 2560 2373 4 644 524 251 81 0 chr6 7803084 7803295 -141713742 - L1M4c LINE L1 -4147 2237 2010 4 644 1737 270 179 60 chr6 7803299 7804972 -141712065 - L1M4c LINE L1 -4488 1896 25 4 644 386 257 113 42 chr6 7805516 7805658 -141711379 - RSINE1 SINE B4 -3 162 11 4 644 370 245 67 29 chr6 7805698 7805803 -141711234 + Tigger5 DNA MER2_type 2298 2406 0 4 644 827 180 105 0 chr6 7805805 7805977 -141711060 - MTD LTR MaLR -8 411 222 4 644 246 326 46 8 chr6 7806021 7806151 -141710886 - HAL1 LINE L1 -1632 875 741 4 644 3969 257 152 44 chr6 7807229 7808819 -141708218 - Tigger1 DNA MER2_type -471 1947 186 4 644 329 269 147 9 chr6 7808816 7808932 -141708105 + B1F SINE Alu 13 144 -5 4 644 357 281 108 15 chr6 7809009 7809139 -141707898 - Tigger1 DNA MER2_type -2246 172 31 4 644 239 211 0 0 chr6 7809409 7809461 -141707576 + HAL1b LINE L1 1335 1386 -623 4 644 479 267 151 29 chr6 7809917 7810056 -141706981 - RSINE1 SINE B4 -1 164 9 4 644 3660 52 28 17 chr6 7810144 7810614 -141706423 - MT2C_Mm LTR ERVL 0 475 1 4 644 242 222 87 22 chr6 7810631 7810723 -141706314 + HAL1b LINE L1 1879 1976 -33 4 644 604 319 68 12 chr6 7811363 7811614 -141705423 + MER2 DNA MER2_type 79 343 -2 4 644 385 241 96 0 chr6 7812291 7812374 -141704663 - MER2 DNA MER2_type -19 326 236 4 644 279 133 0 0 chr6 7813024 7813069 -141703968 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 644 43 47 0 0 chr6 7813837 7813901 -141703136 + AT_rich Low_complexity Low_complexity 1 64 0 4 644 783 187 0 0 chr6 7815050 7815184 -141701853 + B1_Mur4 SINE Alu 1 134 -16 4 644 234 321 0 35 chr6 7816060 7816147 -141700890 - MER5A1 DNA MER1_type -58 108 25 4 644 456 223 18 9 chr6 7817424 7817513 -141699524 + URR1B DNA MER1_type 83 172 -53 4 644 2387 173 86 2 chr6 7817513 7817989 -141699048 + RMER20A LTR ERVK 1 516 0 4 644 321 125 71 0 chr6 7817991 7818047 -141698990 + URR1B DNA MER1_type 166 225 0 4 644 350 245 46 56 chr6 7818203 7818311 -141698726 + MIRc SINE MIR 42 148 -120 4 644 183 286 63 0 chr6 7818874 7818937 -141698100 + MIR SINE MIR 63 129 -133 4 644 245 303 66 0 chr6 7819602 7819678 -141697359 - ID_B1 SINE B4 -62 162 82 4 644 839 186 117 27 chr6 7820178 7820366 -141696671 - B3 SINE B2 -5 211 7 4 644 28 0 0 0 chr6 7821436 7821464 -141695573 + AT_rich Low_complexity Low_complexity 1 28 0 4 644 21 57 0 0 chr6 7822520 7822555 -141694482 + AT_rich Low_complexity Low_complexity 1 35 0 4 644 26 0 0 0 chr6 7822605 7822631 -141694406 + AT_rich Low_complexity Low_complexity 1 26 0 4 644 728 279 60 3 chr6 7822931 7823161 -141693876 + MIR SINE MIR 1 244 -24 4 644 431 264 205 12 chr6 7823289 7823450 -141693587 - MIR SINE MIR -13 249 58 4 644 227 278 80 30 chr6 7823741 7823841 -141693196 + MER5A DNA MER1_type 40 144 -45 4 644 1126 210 141 10 chr6 7826493 7826791 -141690246 - ORR1D1 LTR MaLR -37 337 1 4 644 32 26 0 0 chr6 7827258 7827297 -141689740 + AT_rich Low_complexity Low_complexity 1 39 0 4 644 540 0 0 0 chr6 7828356 7828416 -141688621 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 644 245 221 15 0 chr6 7828545 7828613 -141688424 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 4 644 258 315 66 22 chr6 7828619 7828710 -141688327 - B1_Mus2 SINE Alu -52 95 1 4 644 268 198 60 165 chr6 7829914 7830047 -141686990 + RMER12 LTR ERVK 1159 1277 -45 4 644 551 53 0 13 chr6 7830103 7830179 -141686858 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 4 644 2410 50 0 19 chr6 7830195 7830503 -141686534 - L1_Mus1 LINE L1 0 6567 6266 4 644 207 0 0 0 chr6 7830575 7830598 -141686439 + (T)n Simple_repeat Simple_repeat 1 23 0 4 644 558 0 0 0 chr6 7831359 7831421 -141685616 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 4 644 1483 142 30 53 chr6 7832148 7832452 -141684585 - Lx5 LINE L1 -942 6108 5812 4 644 484 266 16 100 chr6 7832490 7832762 -141684275 + MLT1B LTR MaLR 151 625 -2 4 644 1182 112 0 0 chr6 7833139 7833317 -141683720 + (TA)n Simple_repeat Simple_repeat 1 178 0 4 644 1425 293 68 139 chr6 7833561 7833705 -141683332 + Lx8 LINE L1 6382 6528 -945 4 644 231 88 0 0 chr6 7833705 7833739 -141683298 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 644 1425 293 68 139 chr6 7833739 7834763 -141682274 + Lx8 LINE L1 6529 7467 -6 4 644 321 26 0 0 chr6 7835724 7835762 -141681275 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 644 189 0 0 0 chr6 7836576 7836597 -141680440 + (T)n Simple_repeat Simple_repeat 1 21 0 4 644 334 326 68 18 chr6 7837219 7837438 -141679599 - L1MEg LINE L1 -5222 862 633 4 644 21 0 0 0 chr6 7838403 7838424 -141678613 + AT_rich Low_complexity Low_complexity 1 21 0 4 644 1603 257 92 42 chr6 7839904 7840424 -141676613 + RLTR20B1 LTR ERVK 3 548 -15 4 644 296 219 27 27 chr6 7841014 7841089 -141675948 + RMER3D-int LTR ERVK 1035 1109 -1733 4 644 362 207 0 67 chr6 7841307 7841426 -141675611 + RMER3D-int LTR ERVK 1103 1213 -1629 4 644 4227 181 71 53 chr6 7841487 7842404 -141674633 + MYSERV16_I-int LTR ERVK 1 933 -1393 4 644 6705 141 51 6 chr6 7842401 7843606 -141673431 + MYSERV16_I-int LTR ERVK 1062 2320 -6 4 644 1725 249 90 34 chr6 7843611 7844048 -141672989 + RLTR20B1 LTR ERVK 1 469 -94 4 644 492 18 0 0 chr6 7844048 7844105 -141672932 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 644 1725 249 90 34 chr6 7844105 7844200 -141672837 + RLTR20B1 LTR ERVK 470 563 0 4 644 283 345 93 13 chr6 7844525 7844675 -141672362 - LTR16A LTR ERVL -283 168 7 4 644 861 300 42 72 chr6 7846443 7846802 -141670235 - ORR1A3 LTR MaLR -31 348 1 4 644 4074 305 96 26 chr6 7846804 7848224 -141668813 - ORR1A3-int LTR MaLR -2 1578 53 4 644 288 0 0 0 chr6 7848224 7848256 -141668781 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 644 4074 305 96 26 chr6 7848256 7848308 -141668729 - ORR1A3-int LTR MaLR -1528 52 2 4 644 1579 140 108 4 chr6 7848339 7848618 -141668419 - ORR1A3 LTR MaLR 0 326 19 4 644 988 296 39 69 chr6 7848617 7848980 -141668057 - MTEa LTR MaLR -25 354 3 4 644 2134 292 66 38 chr6 7849005 7849367 -141667670 + Lx8 LINE L1 6392 6751 -722 4 644 207 0 0 0 chr6 7849367 7849390 -141667647 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 644 2134 292 66 38 chr6 7849390 7849878 -141667159 + Lx8 LINE L1 6752 7265 -208 4 644 311 246 0 0 chr6 7849878 7849939 -141667098 + RMER15 LTR ERVL 403 463 -112 4 644 8683 32 0 0 chr6 7850023 7851127 -141665910 - L1Md_F2 LINE L1 -3 6579 5476 4 644 2542 265 112 10 chr6 7851209 7852005 -141665032 + Tigger1 DNA MER2_type 289 1165 -1253 4 644 2772 254 158 18 chr6 7852417 7852932 -141664105 + Tigger1 DNA MER2_type 1228 1833 -585 4 644 1628 228 97 53 chr6 7852932 7853438 -141663599 + RLTR11A LTR ERVK 1 528 0 4 644 2772 254 158 18 chr6 7853438 7853939 -141663098 + Tigger1 DNA MER2_type 1834 2387 -31 4 644 376 285 211 27 chr6 7853949 7854205 -141662832 + ORR1E LTR MaLR 56 358 -1 4 644 279 0 0 0 chr6 7854930 7854961 -141662076 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 644 1480 69 14 29 chr6 7855111 7855319 -141661718 + L1_Mus3 LINE L1 6432 6636 -2 4 644 292 299 0 13 chr6 7856165 7856243 -141660794 + ID4_ SINE ID 3 79 -4 4 644 956 292 109 48 chr6 7856276 7856772 -141660265 + Charlie11 DNA MER1_type 434 959 -1237 4 644 188 122 24 0 chr6 7857836 7857877 -141659160 + (TTTTTA)n Simple_repeat Simple_repeat 2 43 0 4 644 711 207 196 55 chr6 7858888 7859215 -141657822 - RLTR9E LTR ERVK -36 373 1 4 644 3764 13 2 0 chr6 7860295 7860690 -141656347 + MTA_Mm LTR MaLR 1 396 0 4 644 26 0 0 0 chr6 7861318 7861344 -141655693 + AT_rich Low_complexity Low_complexity 1 26 0 4 644 1212 130 38 11 chr6 7863198 7863384 -141653653 + B2_Mm2 SINE B2 2 192 -3 4 644 306 73 0 0 chr6 7863457 7863498 -141653539 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 644 387 0 0 0 chr6 7863498 7863540 -141653497 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 644 252 327 12 73 chr6 7863582 7863747 -141653290 + L1MD2 LINE L1 6196 6350 -9 4 80 12157 107 5 27 chr6 7863876 7866778 -141650259 + L1MA8 LINE L1 356 3118 -3025 4 645 252 130 19 0 chr6 7866750 7866804 -141650233 + L1_Mur2 LINE L1 3130 3184 -2693 4 645 440 194 0 35 chr6 7866805 7866845 -141650192 + polypyrimidine Low_complexity Low_complexity 103 140 0 4 645 1389 54 0 0 chr6 7866845 7867047 -141649990 + (TTTC)n Simple_repeat Simple_repeat 1 202 0 4 645 2481 107 5 80 chr6 7867047 7867433 -141649604 + RLTR10D LTR ERVK 2 358 -1 4 645 440 194 0 35 chr6 7867433 7867534 -141649503 + CT-rich Low_complexity Low_complexity 4 102 0 4 645 583 288 210 11 chr6 7867564 7867831 -141649206 + MTC LTR MaLR 45 364 -57 4 645 351 0 0 0 chr6 7867831 7867870 -141649167 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 645 432 318 73 17 chr6 7867913 7868092 -141648945 - MLT1A1 LTR MaLR -25 383 195 4 645 183 80 0 0 chr6 7868201 7868226 -141648811 + (T)n Simple_repeat Simple_repeat 1 25 0 5 645 42163 7 0 1 chr6 7868266 7875056 -141641981 - L1Md_A LINE L1 0 6582 1 5 645 480 384 80 33 chr6 7875064 7875489 -141641548 - Lx8 LINE L1 -17 7456 7012 5 645 623 246 149 27 chr6 7875509 7875697 -141641340 + Lx8 LINE L1 6873 7083 -390 5 645 265 299 76 38 chr6 7876018 7876150 -141640887 - RMER15 LTR ERVL -87 488 352 5 645 1716 231 7 16 chr6 7876244 7876685 -141640352 + RCHARR1 DNA MER1_type 456 892 -82 5 645 1095 287 116 27 chr6 7876733 7877536 -141639501 + L1MA8 LINE L1 4664 5566 -725 4 645 423 0 0 0 chr6 7877536 7877583 -141639454 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 645 748 270 148 42 chr6 7877583 7877919 -141639118 + L1MA8 LINE L1 5567 5921 -370 4 645 1455 100 16 0 chr6 7878584 7878774 -141638263 + B2_Mm2 SINE B2 1 193 -2 5 645 222 118 0 0 chr6 7878823 7878857 -141638180 + (A)n Simple_repeat Simple_repeat 1 34 0 5 645 37778 29 3 7 chr6 7878858 7884080 -141632957 + L1Md_A LINE L1 391 5586 -297 5 645 8872 37 0 0 chr6 7884080 7885116 -141631921 + L1Md_A LINE L1 5587 6582 0 5 645 1317 280 83 117 chr6 7885266 7885926 -141631111 - MER73 LTR ERVL -1 643 6 5 645 763 223 14 0 chr6 7886031 7886179 -141630858 + B1_Mur4 SINE Alu 1 150 0 5 645 249 159 0 0 chr6 7887942 7887986 -141629051 - L1_Mur2 LINE L1 -4203 1674 1631 5 645 4533 149 54 16 chr6 7887987 7888749 -141628288 + Lx3C LINE L1 6182 6972 -4 5 645 1930 169 16 0 chr6 7888905 7889271 -141627766 - RLTR14 LTR ERV1 -1 381 10 5 645 452 187 19 0 chr6 7889825 7889932 -141627105 + CT-rich Low_complexity Low_complexity 1 109 0 5 645 234 304 32 11 chr6 7890043 7890136 -141626901 - B1F SINE Alu -27 122 28 5 645 302 242 20 31 chr6 7890382 7890480 -141626557 - ORR1D2 LTR MaLR -268 102 6 5 645 200 232 0 35 chr6 7892144 7892202 -141624835 + MIR SINE MIR 90 145 -63 5 645 3439 3 0 0 chr6 7892235 7892646 -141624391 - L1Md_A LINE L1 0 6582 6207 5 645 764 297 107 30 chr6 7892892 7893323 -141623714 + MLT1C LTR MaLR 1 464 -3 5 645 1995 56 8 4 chr6 7893991 7894242 -141622795 - Lx3_Mus LINE L1 -171 6838 6587 5 645 884 139 31 58 chr6 7894242 7894433 -141622604 + Lx3_Mus LINE L1 6824 7009 0 5 645 441 0 0 0 chr6 7894522 7894571 -141622466 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 645 376 315 6 105 chr6 7894691 7894872 -141622165 - RSINE1 SINE B4 0 165 3 5 645 180 0 0 0 chr6 7895604 7895624 -141621413 + (CG)n Simple_repeat Simple_repeat 2 21 0 5 645 396 0 0 0 chr6 7895624 7895667 -141621370 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 645 703 281 36 55 chr6 7896080 7896539 -141620498 + RLTR12B LTR ERVK 17 334 -25 5 645 513 302 132 73 chr6 7896725 7897285 -141619752 + FordPrefect DNA Tip100 1055 1647 -36 5 645 626 213 26 7 chr6 7897798 7897949 -141619088 - RMER5 LTR ERV1 -69 465 312 5 645 418 231 71 53 chr6 7897977 7898146 -141618891 - RMER5 LTR ERV1 -317 217 46 5 645 1046 300 48 42 chr6 7898378 7899000 -141618037 - L1ME1 LINE L1 -211 5968 5343 5 645 282 262 90 45 chr6 7898994 7899150 -141617887 - L1ME1 LINE L1 -1766 4380 4218 5 645 437 228 43 16 chr6 7899358 7899487 -141617550 - MTD LTR MaLR -15 404 279 5 645 317 307 215 22 chr6 7899488 7899888 -141617149 - L1ME1 LINE L1 -2208 3938 3462 5 645 262 329 0 0 chr6 7899889 7899962 -141617075 + CT-rich Low_complexity Low_complexity 2 74 0 5 645 229 302 16 0 chr6 7899970 7900033 -141617004 - PB1D10 SINE Alu -20 97 34 5 645 2031 158 36 14 chr6 7900919 7900934 -141616103 - RMER10A LTR ERVL -16 426 412 5 645 1305 83 0 0 chr6 7900934 7901114 -141615923 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 5 645 2031 158 36 14 chr6 7901114 7901515 -141615522 - RMER10A LTR ERVL -31 411 1 5 645 340 183 141 0 chr6 7901846 7901917 -141615120 - PB1D9 SINE Alu -27 93 13 5 645 275 233 0 16 chr6 7902735 7902796 -141614241 + B4A SINE B4 2 61 -231 5 645 216 242 32 0 chr6 7903688 7903783 -141613254 + GA-rich Low_complexity Low_complexity 4 101 0 5 645 189 107 0 0 chr6 7904140 7904168 -141612869 + (T)n Simple_repeat Simple_repeat 1 28 0 5 645 1689 309 39 21 chr6 7904964 7905534 -141611503 + RMER1C Other Other 374 927 -415 5 645 1001 264 63 38 chr6 7905534 7905849 -141611188 - MTEa LTR MaLR -54 325 3 5 645 7770 66 4 4 chr6 7906298 7907336 -141609701 + L1_Mus2 LINE L1 5529 6566 0 5 645 235 277 15 0 chr6 7907931 7907996 -141609041 + 4.5SRNA scRNA scRNA 23 88 -6 5 645 374 212 0 12 chr6 7907941 7908022 -141609015 + PB1D10 SINE Alu 36 115 -2 5 645 549 123 0 0 chr6 7908334 7908440 -141608597 + (TC)n Simple_repeat Simple_repeat 1 106 0 5 645 360 176 0 0 chr6 7908439 7908507 -141608530 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 645 286 271 9 18 chr6 7908577 7908686 -141608351 + MLT1A0 LTR MaLR 256 363 -2 5 645 301 308 117 33 chr6 7908703 7909096 -141607941 - L2 LINE L2 -955 2464 2039 5 645 441 252 0 0 chr6 7912041 7912299 -141604738 + (TG)n Simple_repeat Simple_repeat 1 258 0 5 645 322 206 14 14 chr6 7912314 7912457 -141604580 + (TCTG)n Simple_repeat Simple_repeat 4 146 0 5 645 564 15 0 0 chr6 7912504 7912569 -141604468 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 645 258 206 16 0 chr6 7913668 7913731 -141603306 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 645 1350 207 108 3 chr6 7914105 7914439 -141602598 + Lx9 LINE L1 7271 7639 -5 5 645 2236 85 3 21 chr6 7914541 7914866 -141602171 - ORR1A2 LTR MaLR -8 319 1 5 645 621 72 0 0 chr6 7919827 7919910 -141597127 + (TG)n Simple_repeat Simple_repeat 1 83 0 5 645 21 57 0 0 chr6 7920266 7920301 -141596736 + AT_rich Low_complexity Low_complexity 1 35 0 5 645 291 203 0 0 chr6 7920848 7920912 -141596125 + GA-rich Low_complexity Low_complexity 1 64 0 5 645 711 271 159 16 chr6 7920912 7921227 -141595810 - MLT2D LTR ERVL -49 365 6 5 645 328 317 33 0 chr6 7922959 7923079 -141593958 - MamRep605 Unknown Unknown -375 501 378 5 645 1230 250 126 20 chr6 7923117 7923570 -141593467 + Lx6 LINE L1 61 561 -7167 5 645 1764 169 47 64 chr6 7923564 7924124 -141592913 + Lx6 LINE L1 859 1402 -4478 5 645 12775 145 23 98 chr6 7924308 7924369 -141592668 + Lx6 LINE L1 3309 3369 -2511 5 645 1239 54 0 0 chr6 7924369 7924517 -141592520 + B1_Mus1 SINE Alu 1 148 0 5 645 12775 145 23 98 chr6 7924517 7924941 -141592096 + Lx6 LINE L1 3370 3752 -2128 5 645 1196 49 0 0 chr6 7924941 7925085 -141591952 + B1_Mus1 SINE Alu 2 145 -3 5 645 342 0 0 0 chr6 7925085 7925123 -141591914 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 645 12775 145 23 98 chr6 7925123 7925474 -141591563 + Lx6 LINE L1 3753 4086 -1794 5 645 180 0 0 0 chr6 7925474 7925494 -141591543 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 645 660 154 0 96 chr6 7925502 7925638 -141591399 - B1_Mur4 SINE Alu -26 124 2 5 645 12775 148 24 95 chr6 7925638 7927518 -141589519 + Lx6 LINE L1 4094 5961 -1499 5 645 893 192 74 42 chr6 7927518 7927735 -141589302 + URR1B DNA MER1_type 2 225 0 5 645 8178 215 49 37 chr6 7927735 7928494 -141588543 + Lx6 LINE L1 5962 6732 -728 5 645 3164 66 5 0 chr6 7928494 7928888 -141588149 - MTA_Mm LTR MaLR 0 396 1 5 645 8178 215 49 37 chr6 7928888 7929601 -141587436 + Lx6 LINE L1 6733 7459 -1 5 645 885 278 83 38 chr6 7929576 7930030 -141587007 + L1MA5 LINE L1 5429 5908 -1736 5 645 532 326 28 91 chr6 7930091 7930378 -141586659 - B4A SINE B4 -22 270 2 5 645 192 40 0 0 chr6 7931802 7931827 -141585210 + (T)n Simple_repeat Simple_repeat 1 25 0 5 645 263 279 30 30 chr6 7933641 7933774 -141583263 + L1MC4 LINE L1 6599 6731 -1311 5 645 570 93 0 0 chr6 7933824 7933910 -141583127 - B2_Mm2 SINE B2 -109 86 1 5 645 192 344 88 49 chr6 7934254 7934480 -141582557 + L2 LINE L2 1175 1409 -2010 5 645 4707 111 32 96 chr6 7935788 7937055 -141579982 - L1_Mur1 LINE L1 -2594 3292 2260 5 645 4806 103 49 0 chr6 7937038 7937717 -141579320 - L1VL2 LINE L1 -5547 788 77 5 645 311 241 11 24 chr6 7937711 7937799 -141579238 + Lx8 LINE L1 6774 6871 -602 5 645 832 305 104 47 chr6 7937795 7938245 -141578792 + Lx8 LINE L1 6998 7473 0 5 645 233 176 98 0 chr6 7938650 7938701 -141578336 + MLT1H LTR MaLR 491 546 -3 5 645 587 232 92 0 chr6 7938887 7939029 -141578008 - RSINE1 SINE B4 -8 157 3 5 645 370 305 0 9 chr6 7939030 7939136 -141577901 - ID_B1 SINE B4 -39 185 81 5 645 363 276 65 6 chr6 7939198 7939366 -141577671 - L1M4b LINE L1 -5104 2230 2053 5 645 435 138 0 0 chr6 7942823 7942910 -141574127 + (CCAA)n Simple_repeat Simple_repeat 1 87 0 5 645 1278 165 0 22 chr6 7943337 7943566 -141573471 - URR1A DNA MER1_type 0 226 3 5 645 23 0 0 0 chr6 7943788 7943811 -141573226 + AT_rich Low_complexity Low_complexity 1 23 0 5 645 361 344 99 90 chr6 7944930 7945199 -141571838 + MLT1D LTR MaLR 1 272 -233 5 645 509 272 0 9 chr6 7945199 7945314 -141571723 + B1F1 SINE Alu 2 115 -34 5 645 207 296 14 36 chr6 7945600 7945719 -141571318 + (TCTCTG)n Simple_repeat Simple_repeat 1 116 0 5 645 231 262 38 0 chr6 7945608 7945688 -141571349 + (TCTG)n Simple_repeat Simple_repeat 4 86 0 5 645 279 0 0 0 chr6 7945719 7945750 -141571287 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 645 207 296 14 36 chr6 7945750 7945770 -141571267 + (TCTCTG)n Simple_repeat Simple_repeat 5 24 0 5 645 212 143 0 23 chr6 7946540 7946583 -141570454 + GA-rich Low_complexity Low_complexity 4 45 0 5 645 26 0 0 0 chr6 7946681 7946707 -141570330 + AT_rich Low_complexity Low_complexity 1 26 0 5 645 316 366 79 47 chr6 7946881 7947325 -141569712 + L1ME3B LINE L1 5532 5989 -251 5 645 189 366 36 12 chr6 7948254 7948337 -141568700 + MIRb SINE MIR 9 93 -175 5 645 293 333 0 0 chr6 7948889 7948961 -141568076 - PB1D7 SINE Alu -6 114 43 5 645 411 166 21 37 chr6 7949651 7949847 -141567190 + (CA)n Simple_repeat Simple_repeat 1 192 0 5 645 198 143 0 0 chr6 7952020 7952055 -141564982 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 645 208 0 62 0 chr6 7952131 7952163 -141564874 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 5 645 215 403 48 8 chr6 7952167 7952292 -141564745 - B1F1 SINE Alu -19 130 1 5 645 1818 253 66 27 chr6 7952790 7953339 -141563698 + MER34A1 LTR ERV1 9 578 -9 5 645 543 279 117 46 chr6 7953370 7953631 -141563406 - MTE2a LTR MaLR -2 417 150 5 645 203 229 42 0 chr6 7954798 7954846 -141562191 + GA-rich Low_complexity Low_complexity 1 50 0 5 645 1264 93 49 6 chr6 7955007 7955190 -141561847 - B2_Mm2 SINE B2 -2 193 3 6 645 682 231 7 13 chr6 7955420 7955569 -141561468 + B1F SINE Alu 1 148 -1 6 645 1836 236 119 33 chr6 7956317 7957319 -141559718 - Lx7 LINE L1 -1519 6177 5094 6 645 615 223 15 8 chr6 7957321 7957452 -141559585 + B1_Mur2 SINE Alu 1 132 -17 6 645 23 33 0 0 chr6 7957756 7957786 -141559251 + AT_rich Low_complexity Low_complexity 1 30 0 6 645 1799 215 35 13 chr6 7958317 7958690 -141558347 + ORR1C2 LTR MaLR 4 384 0 6 645 651 148 0 60 chr6 7959638 7959789 -141557248 + L1Md_T LINE L1 6441 6582 0 6 645 233 301 89 68 chr6 7960037 7960183 -141556854 + MLT1A LTR MaLR 225 373 -1 6 645 261 0 0 0 chr6 7960443 7960472 -141556565 + (T)n Simple_repeat Simple_repeat 1 29 0 6 645 840 192 0 126 chr6 7960611 7960825 -141556212 + ORR1C1 LTR MaLR 1 187 -191 6 645 884 98 34 23 chr6 7960846 7961199 -141555838 + (TCTG)n Simple_repeat Simple_repeat 1 356 0 6 645 1266 162 5 0 chr6 7961206 7961416 -141555621 + ORR1C1 LTR MaLR 168 378 0 6 645 250 272 179 32 chr6 7961415 7961437 -141555600 - RMER30 DNA MER1_type -78 124 103 6 645 378 0 0 0 chr6 7961437 7961479 -141555558 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 6 645 250 272 179 32 chr6 7961479 7961551 -141555486 - RMER30 DNA MER1_type -100 102 17 6 645 397 376 42 5 chr6 7961709 7961899 -141555138 + MER58A DNA MER1_type 3 199 -25 6 645 268 294 29 0 chr6 7962061 7962129 -141554908 + LTR82A LTR ERVL 368 437 -435 6 645 25 65 0 0 chr6 7962730 7962776 -141554261 + AT_rich Low_complexity Low_complexity 1 46 0 6 645 222 91 0 0 chr6 7963436 7963469 -141553568 + (TAAAA)n Simple_repeat Simple_repeat 5 37 0 6 645 452 202 23 109 chr6 7965261 7965389 -141551648 + RMER15 LTR ERVL 1 117 -458 6 645 282 160 0 0 chr6 7965423 7965473 -141551564 + T-rich Low_complexity Low_complexity 2 51 0 6 645 928 245 39 4 chr6 7965473 7965703 -141551334 + RMER15 LTR ERVL 338 575 0 6 645 474 254 0 8 chr6 7965771 7965890 -141551147 + Lx6 LINE L1 7287 7404 -56 6 645 1765 77 0 0 chr6 7968135 7968383 -141548654 - L1_Mm LINE L1 -586 5297 5050 6 645 483 27 13 13 chr6 7968383 7968458 -141548579 + L1Md_F2 LINE L1 6506 6580 -2 6 645 218 105 0 26 chr6 7969127 7969166 -141547871 + (TTA)n Simple_repeat Simple_repeat 2 39 0 6 645 367 241 0 102 chr6 7969275 7969363 -141547674 - RSINE1 SINE B4 -83 82 4 6 645 476 350 39 0 chr6 7969643 7969846 -141547191 + Lx8 LINE L1 6883 7093 -380 6 645 2267 110 17 59 chr6 7969847 7970227 -141546810 + ORR1A2 LTR MaLR 1 370 0 6 645 2618 46 65 0 chr6 7970363 7970688 -141546349 - ORR1A1 LTR MaLR 0 346 1 6 645 420 191 0 0 chr6 7970704 7970793 -141546244 + (CA)n Simple_repeat Simple_repeat 1 89 0 6 645 206 311 45 80 chr6 7971049 7971161 -141545876 + L2b LINE L2 3265 3372 -3 6 645 441 0 0 0 chr6 7973257 7973306 -141543731 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 645 1037 281 56 19 chr6 7975959 7976278 -141540759 - MLT1A0 LTR MaLR -2 363 33 6 645 734 178 26 52 chr6 7976579 7976733 -141540304 + B1_Mur4 SINE Alu 1 150 0 6 645 282 29 0 0 chr6 7976736 7976771 -141540266 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 6 645 1236 54 0 0 chr6 7976780 7976928 -141540109 + B1_Mus1 SINE Alu 1 148 0 6 645 210 150 0 0 chr6 7976930 7976970 -141540067 + (A)n Simple_repeat Simple_repeat 1 40 0 6 645 714 258 44 0 chr6 7977033 7977192 -141539845 + B3 SINE B2 9 174 -42 6 645 442 299 64 56 chr6 7977212 7977446 -141539591 + L1MC4 LINE L1 7683 7918 -124 6 645 234 0 0 0 chr6 7978018 7978044 -141538993 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 645 412 268 291 19 chr6 7978077 7978290 -141538747 - B4 SINE B4 -18 274 4 6 645 352 349 0 0 chr6 7980470 7980576 -141536461 - MLT1C LTR MaLR 0 467 362 6 645 522 91 0 0 chr6 7981060 7981137 -141535900 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 645 608 314 50 58 chr6 7981402 7981679 -141535358 + B4A SINE B4 2 276 -16 6 645 486 208 113 0 chr6 7983132 7983238 -141533799 - B3A SINE B2 -75 123 6 6 645 1039 234 186 17 chr6 7983820 7984303 -141532734 + Lx9 LINE L1 7059 7623 -21 6 645 292 167 176 1 chr6 7984840 7984909 -141532128 - MTEa LTR MaLR -13 366 270 6 645 269 329 12 12 chr6 7985144 7985227 -141531810 - ORR1E LTR MaLR -276 83 1 6 645 509 324 162 34 chr6 7985229 7985641 -141531396 + MLT1D LTR MaLR 41 505 0 6 645 243 139 116 0 chr6 7986237 7986280 -141530757 - MTD LTR MaLR 0 419 372 6 645 284 330 0 10 chr6 7986280 7986378 -141530659 - MLT1D LTR MaLR -6 499 403 6 645 1222 221 46 124 chr6 7986374 7986768 -141530269 - MTD LTR MaLR -44 356 14 6 645 282 134 45 0 chr6 7986825 7986892 -141530145 + GA-rich Low_complexity Low_complexity 1 70 0 6 645 226 264 0 6 chr6 7986972 7987051 -141529986 + PB1D9 SINE Alu 1 118 -9 6 645 485 318 62 24 chr6 7987061 7987502 -141529535 + L1MB8 LINE L1 5700 6178 0 6 645 2932 95 2 2 chr6 7988369 7988769 -141528268 - MTB LTR MaLR 0 400 1 6 645 2333 142 17 31 chr6 7989041 7989454 -141527583 + MTB_Mm LTR MaLR 1 407 0 6 645 199 316 148 20 chr6 7989619 7989822 -141527215 + L2 LINE L2 1715 1943 -1476 6 645 429 317 162 47 chr6 7989906 7990499 -141526538 + L2 LINE L2 1965 2625 -794 6 645 587 238 57 71 chr6 7990644 7990784 -141526253 + B1_Mur1 SINE Alu 11 148 -1 6 645 246 32 0 0 chr6 7991363 7991394 -141525643 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 645 625 292 8 0 chr6 7991422 7991552 -141525485 - RSINE1 SINE B4 -33 132 2 6 645 245 341 57 0 chr6 7991580 7991668 -141525369 + L2a LINE L2 3322 3414 -12 6 645 246 394 120 18 chr6 7991781 7992107 -141524930 - L2c LINE L2 -67 3320 2962 6 645 297 309 68 60 chr6 7992609 7992857 -141524180 + L2 LINE L2 2727 2976 -443 6 645 21 0 0 0 chr6 7993230 7993251 -141523786 + AT_rich Low_complexity Low_complexity 1 21 0 6 645 637 325 134 29 chr6 7994397 7994771 -141522266 - L2a LINE L2 0 3426 3014 6 645 477 0 0 0 chr6 7994808 7994861 -141522176 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 645 1201 48 0 20 chr6 7995021 7995171 -141521866 - B1_Mus2 SINE Alu 0 147 1 6 80 573 335 128 31 chr6 7995179 7995833 -141521204 + L1MEe LINE L1 860 1601 -4407 6 646 242 219 16 0 chr6 7996095 7996159 -141520878 + T-rich Low_complexity Low_complexity 4 68 0 6 646 24 0 0 0 chr6 7997430 7997454 -141519583 + AT_rich Low_complexity Low_complexity 1 24 0 6 646 261 0 0 0 chr6 7997952 7997981 -141519056 + (T)n Simple_repeat Simple_repeat 1 29 0 6 646 310 312 11 0 chr6 7998262 7998355 -141518682 + ID_B1 SINE B4 86 179 -45 6 646 24 53 0 0 chr6 7999087 7999125 -141517912 + AT_rich Low_complexity Low_complexity 1 38 0 6 646 200 181 48 0 chr6 7999149 7999232 -141517805 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 646 703 183 22 88 chr6 7999776 8000000 -141517037 + L1_Mur1 LINE L1 208 569 -6413 6 646 4795 98 27 6 chr6 8000000 8000904 -141516133 + Lx3_Mus LINE L1 572 1496 -4390 1 646 21386 76 183 15 chr6 8000905 8005090 -141511947 + L1Md_T LINE L1 393 5586 -297 2 646 8637 25 0 0 chr6 8005090 8006085 -141510952 + L1Md_T LINE L1 5587 6581 -1 2 646 2708 89 63 7 chr6 8006085 8006207 -141510830 + MusHAL1 LINE L1 1537 1684 -1028 3 646 213 39 0 0 chr6 8006207 8006233 -141510804 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 4 646 2708 89 63 7 chr6 8006233 8006553 -141510484 + MusHAL1 LINE L1 1685 2004 -708 3 646 745 127 0 0 chr6 8006551 8006669 -141510368 + Lx3_Mus LINE L1 4057 4174 -1703 1 646 8226 93 43 61 chr6 8006798 8007311 -141509726 + Lx3_Mus LINE L1 5274 5804 -1205 1 646 303 167 19 0 chr6 8007311 8007365 -141509672 + B1_Mus2 SINE Alu 77 131 -16 5 646 8226 93 43 61 chr6 8007365 8008524 -141508513 + Lx3_Mus LINE L1 5805 7005 -4 1 646 1071 190 64 10 chr6 8008678 8008880 -141508157 - B3 SINE B2 -3 213 1 6 646 1165 113 0 17 chr6 8010410 8010568 -141506469 + B2_Mm2 SINE B2 1 155 -40 7 646 297 0 0 0 chr6 8010568 8010601 -141506436 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 8 646 1165 113 0 17 chr6 8010601 8010622 -141506415 + B2_Mm2 SINE B2 156 176 -19 7 646 22 35 0 0 chr6 8011042 8011071 -141505966 + AT_rich Low_complexity Low_complexity 1 29 0 9 646 440 328 44 22 chr6 8011534 8011671 -141505366 - ID_B1 SINE B4 -3 221 82 1 646 194 319 179 12 chr6 8012971 8013133 -141503904 + MIRb SINE MIR 73 261 -7 1 646 335 355 23 0 chr6 8013239 8013456 -141503581 + L1M5 LINE L1 5554 5775 -387 1 646 381 303 91 18 chr6 8013464 8013740 -141503297 + L1MB7 LINE L1 5818 6113 -71 1 646 1095 60 0 0 chr6 8013741 8013874 -141503163 + B1_Mus1 SINE Alu 1 133 -15 1 646 294 29 0 0 chr6 8013880 8013915 -141503122 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 646 842 238 12 12 chr6 8013950 8014120 -141502917 + B3 SINE B2 1 170 -46 1 646 436 298 66 36 chr6 8014365 8014532 -141502505 + RMER15 LTR ERVL 404 575 0 1 646 488 281 71 30 chr6 8015211 8015578 -141501459 + L1MC5 LINE L1 7488 7869 -92 1 646 188 284 63 81 chr6 8016880 8016991 -141500046 + MIRm SINE MIR 98 206 -70 1 646 281 241 146 108 chr6 8016897 8017027 -141500010 - MIRb SINE MIR -110 166 32 2 646 244 328 134 22 chr6 8017464 8017598 -141499439 - MIRb SINE MIR -52 216 68 2 646 396 0 0 0 chr6 8017711 8017755 -141499282 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 646 250 196 35 18 chr6 8019625 8019682 -141497355 + MIRc SINE MIR 97 154 -114 2 646 379 0 39 0 chr6 8020765 8020816 -141496221 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 646 7749 123 35 9 chr6 8021977 8023496 -141493541 + Lx2A LINE L1 5424 7008 0 2 646 4252 154 114 36 chr6 8023755 8024597 -141492440 + RMER13B LTR ERVK 1 908 0 2 646 182 375 9 0 chr6 8024972 8025084 -141491953 - L2 LINE L2 -1070 2349 2237 2 646 347 202 10 0 chr6 8025503 8025602 -141491435 + GA-rich Low_complexity Low_complexity 4 103 0 2 646 457 190 54 23 chr6 8025626 8025755 -141491282 + L1MA5 LINE L1 6117 6249 -51 2 646 21 0 0 0 chr6 8026163 8026184 -141490853 + AT_rich Low_complexity Low_complexity 1 21 0 3 646 180 227 36 96 chr6 8026355 8026438 -141490599 + MIRc SINE MIR 24 101 -167 3 646 486 0 0 0 chr6 8026478 8026532 -141490505 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 646 351 113 0 0 chr6 8026981 8027034 -141490003 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 3 646 993 121 11 6 chr6 8027414 8027589 -141489448 + (GA)n Simple_repeat Simple_repeat 2 177 0 3 646 1305 246 68 15 chr6 8027818 8028157 -141488880 + MTEa LTR MaLR 1 357 -22 3 646 277 374 37 9 chr6 8028819 8028927 -141488110 + MER81 DNA AcHobo 3 113 -1 3 646 287 349 23 16 chr6 8029129 8029257 -141487780 + ORR1E LTR MaLR 10 138 -221 3 646 188 184 0 20 chr6 8029513 8029563 -141487474 + CT-rich Low_complexity Low_complexity 3 51 0 3 646 338 231 0 0 chr6 8029581 8029646 -141487391 - ID4_ SINE ID -16 67 3 3 646 24 0 0 0 chr6 8030850 8030874 -141486163 + AT_rich Low_complexity Low_complexity 1 24 0 4 646 242 327 37 37 chr6 8031094 8031202 -141485835 - MER5A DNA MER1_type -74 115 8 4 646 451 303 63 29 chr6 8031231 8031469 -141485568 + Charlie7a DNA MER1_type 27 272 0 4 646 265 350 30 10 chr6 8031478 8031579 -141485458 + Cheshire DNA MER1_type 2 104 -2316 4 646 284 253 11 44 chr6 8031571 8031662 -141485375 + Cheshire DNA MER1_type 2318 2405 -15 4 646 496 204 19 28 chr6 8032069 8032175 -141484862 + RSINE1 SINE B4 4 108 -57 4 646 491 88 21 21 chr6 8032175 8032268 -141484769 + (CA)n Simple_repeat Simple_repeat 2 94 0 4 646 753 284 14 14 chr6 8032744 8032958 -141484079 + B3 SINE B2 2 215 -1 4 646 788 132 28 17 chr6 8034409 8034586 -141482451 + CT-rich Low_complexity Low_complexity 2 180 0 4 646 539 315 12 6 chr6 8034718 8034881 -141482156 - MER5A DNA MER1_type -25 164 1 4 646 207 395 53 0 chr6 8035863 8035977 -141481060 - L2b LINE L2 -3 3372 3253 4 646 733 327 83 27 chr6 8037203 8037577 -141479460 + MLT1C LTR MaLR 65 459 -8 5 646 2310 99 17 8 chr6 8037607 8037963 -141479074 + RLTR15 LTR ERVK 1 359 0 5 646 253 226 90 56 chr6 8038031 8038120 -141478917 + URR1A DNA MER1_type 1 92 -134 5 646 894 139 32 0 chr6 8038123 8038281 -141478756 + URR1A DNA MER1_type 64 226 0 5 646 396 311 78 8 chr6 8038444 8038687 -141478350 + L1ME1 LINE L1 5627 5886 -293 5 646 1143 75 0 0 chr6 8039107 8039253 -141477784 + B1_Mm SINE Alu 2 147 0 5 646 207 0 0 0 chr6 8039253 8039276 -141477761 + (A)n Simple_repeat Simple_repeat 1 23 0 5 646 1044 216 13 74 chr6 8039886 8040116 -141476921 - ID_B1 SINE B4 -1 223 8 5 646 500 351 95 22 chr6 8040122 8040492 -141476545 + L1M5 LINE L1 4735 5131 -1015 5 646 238 230 92 0 chr6 8040518 8040605 -141476432 + L1MD LINE L1 5187 5281 -865 5 646 244 301 0 14 chr6 8041133 8041207 -141475830 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 5 646 213 163 23 0 chr6 8041272 8041315 -141475722 + (TAA)n Simple_repeat Simple_repeat 1 44 0 6 646 216 97 0 0 chr6 8042033 8042064 -141474973 + (CATA)n Simple_repeat Simple_repeat 4 34 0 6 646 537 69 0 0 chr6 8042072 8042144 -141474893 + B1_Mm SINE Alu 74 145 -2 6 646 266 0 29 0 chr6 8042159 8042193 -141474844 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 646 226 302 69 50 chr6 8042278 8042379 -141474658 + B4A SINE B4 71 173 -119 6 646 350 272 0 61 chr6 8042299 8042397 -141474640 + PB1D10 SINE Alu 13 104 -13 6 646 539 29 14 0 chr6 8042511 8042580 -141474457 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 6 646 25 31 0 0 chr6 8042833 8042865 -141474172 + AT_rich Low_complexity Low_complexity 1 32 0 6 646 704 214 0 8 chr6 8043357 8043489 -141473548 + B1_Mur2 SINE Alu 19 149 0 6 646 369 352 191 22 chr6 8044063 8044377 -141472660 + LTR78 LTR ERV1 253 619 -685 6 646 584 289 122 5 chr6 8045003 8045191 -141471846 + B3 SINE B2 1 210 -6 7 646 768 144 56 0 chr6 8047317 8047497 -141469540 - Lx9 LINE L1 -1 7643 7454 7 646 29 28 0 0 chr6 8047592 8047628 -141469409 + AT_rich Low_complexity Low_complexity 1 36 0 7 646 668 176 67 22 chr6 8047782 8047916 -141469121 + B1_Mur1 SINE Alu 4 143 -6 7 646 196 311 65 32 chr6 8047980 8048073 -141468964 - L2a LINE L2 -21 3405 3310 7 646 317 300 307 28 chr6 8048535 8048923 -141468114 - L2a LINE L2 -913 2506 2011 7 646 265 314 0 28 chr6 8048977 8049049 -141467988 - ID4 SINE ID -1 82 13 7 646 356 314 28 9 chr6 8049073 8049179 -141467858 - B1F1 SINE Alu -39 110 3 7 646 381 312 78 42 chr6 8049182 8049349 -141467688 - MER58A DNA MER1_type -9 215 43 7 646 313 275 99 0 chr6 8050506 8050637 -141466400 + L1M2 LINE L1 5697 5840 -457 7 646 532 236 7 59 chr6 8050715 8050850 -141466187 + RSINE1 SINE B4 4 131 -34 7 646 278 205 0 13 chr6 8051906 8051985 -141465052 + (TG)n Simple_repeat Simple_repeat 1 78 0 8 646 197 0 0 67 chr6 8052009 8052039 -141464998 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 8 646 647 288 97 73 chr6 8052207 8052466 -141464571 + MER90a LTR ERV1 174 429 -185 8 646 2808 45 8 11 chr6 8052466 8052824 -141464213 - L1Md_F3 LINE L1 -14 6570 6214 8 646 647 288 97 73 chr6 8052824 8052946 -141464091 + MER90a LTR ERV1 430 563 -51 8 646 1292 249 27 90 chr6 8054239 8054641 -141462396 + MTE2a LTR MaLR 3 379 0 8 646 879 265 5 14 chr6 8054860 8055067 -141461970 - B3 SINE B2 -11 205 1 8 646 315 0 0 0 chr6 8055176 8055211 -141461826 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 646 222 37 0 0 chr6 8055211 8055237 -141461800 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 646 22 80 0 0 chr6 8055335 8055385 -141461652 + AT_rich Low_complexity Low_complexity 1 50 0 8 646 559 317 68 5 chr6 8055897 8056103 -141460934 + MER58A DNA MER1_type 1 219 -5 8 646 407 263 21 0 chr6 8057404 8057499 -141459538 - B3A SINE B2 -63 135 39 9 646 29804 76 8 23 chr6 8057509 8062485 -141454552 + L1Md_F2 LINE L1 346 5243 -640 9 646 828 30 0 0 chr6 8062485 8062584 -141454453 + (TG)n Simple_repeat Simple_repeat 2 100 0 9 646 29804 75 8 28 chr6 8062584 8062929 -141454108 + L1Md_F2 LINE L1 5244 5584 -299 9 646 8369 37 1 1 chr6 8062930 8063926 -141453111 + L1Md_F2 LINE L1 5587 6582 0 9 646 567 288 43 0 chr6 8063959 8064098 -141452939 - B4A SINE B4 -59 233 89 9 646 701 245 65 37 chr6 8064463 8064679 -141452358 + LTRIS4 LTR ERV1 286 507 0 9 646 1181 182 9 9 chr6 8064782 8064998 -141452039 + B3 SINE B2 1 216 0 9 646 378 276 11 0 chr6 8065020 8065107 -141451930 + B4A SINE B4 1 88 -204 9 646 343 329 53 67 chr6 8065177 8065194 -141451843 + B4 SINE B4 76 90 -202 9 646 500 204 121 0 chr6 8065194 8065328 -141451709 + B1_Mur4 SINE Alu 1 149 -1 9 646 1362 280 76 21 chr6 8065763 8066146 -141450891 - MTD LTR MaLR -12 407 4 9 646 1855 258 78 60 chr6 8066149 8066851 -141450186 - MTD-int LTR MaLR 0 1258 544 9 646 1479 253 42 17 chr6 8066936 8067338 -141449699 + MTD LTR MaLR 8 419 0 9 646 21 0 0 0 chr6 8068062 8068083 -141448954 + AT_rich Low_complexity Low_complexity 1 21 0 1 646 811 219 33 43 chr6 8068103 8068313 -141448724 - ID_B1 SINE B4 -15 209 2 1 646 335 268 28 85 chr6 8069886 8069925 -141447112 + RSINE1 SINE B4 4 42 -123 1 646 3400 33 2 0 chr6 8069925 8070318 -141446719 - MTA_Mm LTR MaLR 0 396 3 1 646 9364 33 0 0 chr6 8070319 8071417 -141445620 - MTA_Mm-int LTR MaLR 0 1098 1 1 646 3516 20 2 0 chr6 8071417 8071812 -141445225 - MTA_Mm LTR MaLR 0 396 1 1 646 335 268 28 85 chr6 8071812 8071875 -141445162 + RSINE1 SINE B4 43 102 -63 1 646 45 62 0 0 chr6 8071902 8071982 -141445055 + AT_rich Low_complexity Low_complexity 1 80 0 1 646 1049 52 0 7 chr6 8072035 8072172 -141444865 - B1_Mm SINE Alu 0 147 12 1 646 20714 94 19 3 chr6 8072172 8076004 -141441033 + L1_Mus1 LINE L1 2673 6567 0 1 646 28 0 0 0 chr6 8076004 8076032 -141441005 + AT_rich Low_complexity Low_complexity 1 28 0 1 646 21 36 0 0 chr6 8076059 8076087 -141440950 + AT_rich Low_complexity Low_complexity 1 28 0 1 646 422 297 113 13 chr6 8076313 8076463 -141440574 + B3A SINE B2 1 165 -33 1 646 207 0 0 0 chr6 8076468 8076491 -141440546 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 646 2653 67 37 3 chr6 8077700 8078077 -141438960 - L1_Mus3 LINE L1 -1 6637 6248 1 646 693 66 0 0 chr6 8079079 8079170 -141437867 + (GGAA)n Simple_repeat Simple_repeat 3 93 0 1 646 1308 79 0 0 chr6 8079187 8079365 -141437672 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1 646 4233 140 27 18 chr6 8079724 8080504 -141436533 + RMER17D2 LTR ERVK 1 787 -22 1 646 1347 129 23 53 chr6 8080500 8080762 -141436275 + RMER17D2 LTR ERVK 556 809 0 1 646 1078 191 6 138 chr6 8080832 8081378 -141435659 + RMER17C LTR ERVK 16 410 0 1 646 891 149 0 0 chr6 8081867 8082021 -141435016 + (GAA)n Simple_repeat Simple_repeat 3 156 0 1 646 16125 156 15 3 chr6 8082432 8085498 -141431539 + L1_Mur1 LINE L1 1644 4747 -1139 1 646 6963 79 16 19 chr6 8086426 8088157 -141428880 + L1VL4 LINE L1 200 1939 -1620 1 646 651 46 0 0 chr6 8088295 8088382 -141428655 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 646 1127 68 7 27 chr6 8088417 8088567 -141428470 - B1_Mus1 SINE Alu 0 148 2 1 646 932 236 34 10 chr6 8088942 8089147 -141427890 - B3 SINE B2 -5 211 2 1 646 267 378 12 0 chr6 8089317 8089399 -141427638 + PB1 SINE Alu 1 83 -44 1 646 388 310 28 0 chr6 8090267 8090409 -141426628 + (TGGA)n Simple_repeat Simple_repeat 3 148 0 1 646 1275 76 15 51 chr6 8090535 8090730 -141426307 + B2_Mm2 SINE B2 1 188 -7 1 646 593 232 110 37 chr6 8091759 8092032 -141425005 - MER33 DNA MER1_type -6 318 26 1 646 1220 48 0 0 chr6 8092398 8092545 -141424492 - B1_Mus2 SINE Alu 0 147 1 1 646 6992 98 4 3 chr6 8095077 8096520 -141420517 + Lx LINE L1 5086 6528 -126 1 646 1607 144 43 13 chr6 8097118 8097420 -141419617 - Lx LINE L1 0 6654 6344 1 646 21 57 0 0 chr6 8097766 8097801 -141419236 + AT_rich Low_complexity Low_complexity 1 35 0 1 646 21 0 0 0 chr6 8097936 8097957 -141419080 + AT_rich Low_complexity Low_complexity 1 21 0 1 646 29 0 0 0 chr6 8099902 8099931 -141417106 + AT_rich Low_complexity Low_complexity 1 29 0 1 646 625 133 114 36 chr6 8099984 8100089 -141416948 - RMER4A LTR ERVK -8 458 345 1 646 431 35 18 0 chr6 8100089 8100146 -141416891 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 646 598 83 37 0 chr6 8100147 8100256 -141416781 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 1 646 625 133 114 36 chr6 8100256 8100288 -141416749 - RMER4A LTR ERVK -122 344 309 1 646 2233 169 71 9 chr6 8100294 8100718 -141416319 - RMER4A LTR ERVK -4 462 13 1 646 717 184 12 6 chr6 8100720 8100889 -141416148 + GA-rich Low_complexity Low_complexity 3 172 0 1 646 6749 84 47 2 chr6 8100903 8101900 -141415137 + L1_Mus4 LINE L1 5590 6631 -5 1 646 21 57 0 0 chr6 8102065 8102100 -141414937 + AT_rich Low_complexity Low_complexity 1 35 0 1 646 663 261 22 7 chr6 8102108 8102243 -141414794 + B1_Mur1 SINE Alu 6 142 -7 1 646 738 0 0 0 chr6 8102255 8102337 -141414700 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 1 646 651 26 0 0 chr6 8102584 8102661 -141414376 + (TTTA)n Simple_repeat Simple_repeat 1 77 0 1 646 266 178 0 40 chr6 8102757 8102833 -141414204 + C-rich Low_complexity Low_complexity 5 77 0 1 646 232 115 16 47 chr6 8104687 8104751 -141412286 + T-rich Low_complexity Low_complexity 2 63 0 1 646 348 344 6 50 chr6 8105168 8105327 -141411710 - MER5B DNA MER1_type -1 177 26 1 646 714 214 14 0 chr6 8105690 8105830 -141411207 - B1_Mus1 SINE Alu -6 142 1 1 646 3357 31 13 3 chr6 8106032 8106424 -141410613 + MTA_Mm LTR MaLR 1 396 0 1 646 248 148 0 16 chr6 8108176 8108238 -141408799 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 1 646 184 345 54 54 chr6 8108633 8108725 -141408312 - MIRb SINE MIR -176 92 1 1 646 268 302 100 31 chr6 8109503 8109633 -141407404 + Charlie10b DNA MER1_type 4 142 -100 1 646 238 280 200 0 chr6 8109690 8109765 -141407272 + Charlie10b DNA MER1_type 150 239 -3 1 646 459 0 0 0 chr6 8109827 8109878 -141407159 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 646 191 247 117 11 chr6 8110536 8110630 -141406407 - L3 LINE CR1 -2439 2050 1947 1 646 399 279 6 103 chr6 8110858 8111014 -141406023 - Zaphod DNA Tip100 -1 4030 3890 1 646 859 246 24 0 chr6 8111041 8111252 -141405785 + ID_B1 SINE B4 2 217 -7 1 646 180 0 0 0 chr6 8111924 8111944 -141405093 + (T)n Simple_repeat Simple_repeat 1 20 0 1 646 240 35 0 0 chr6 8115066 8115095 -141401942 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 646 658 167 25 6 chr6 8115289 8115446 -141401591 + GA-rich Low_complexity Low_complexity 6 165 0 1 646 319 280 181 8 chr6 8115447 8115580 -141401457 + HAL1-3A_ME LINE L1 2284 2439 -419 1 646 912 61 80 0 chr6 8115582 8115745 -141401292 + (GGGAA)n Simple_repeat Simple_repeat 1 176 0 1 646 506 279 0 0 chr6 8116043 8116154 -141400883 + B1F SINE Alu 1 111 -38 1 646 1574 230 91 40 chr6 8116166 8116564 -141400473 - MTD LTR MaLR -1 418 1 1 646 270 21 20 41 chr6 8116596 8116645 -141400392 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 646 441 0 0 0 chr6 8117481 8117530 -141399507 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 646 271 237 78 13 chr6 8118540 8118617 -141398420 + Kanga1b DNA Tc2 1 82 -697 1 646 1331 41 0 6 chr6 8119214 8119386 -141397651 - L1Md_F2 LINE L1 -9 6573 6403 1 646 396 0 0 0 chr6 8120364 8120408 -141396629 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 646 364 82 33 0 chr6 8120460 8120521 -141396516 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 646 30 0 0 0 chr6 8121698 8121728 -141395309 + AT_rich Low_complexity Low_complexity 1 30 0 1 646 569 279 64 0 chr6 8121755 8121895 -141395142 - B1F SINE Alu 0 149 1 1 646 222 37 0 0 chr6 8123078 8123105 -141393932 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 646 996 94 43 0 chr6 8123115 8123253 -141393784 - B1_Mus1 SINE Alu -4 144 1 1 646 495 343 22 22 chr6 8123571 8123884 -141393153 + L1ME1 LINE L1 5809 6121 -58 1 646 236 259 35 0 chr6 8124615 8124673 -141392364 + MTEa LTR MaLR 286 345 -34 1 80 930 187 192 28 chr6 8126451 8126581 -141390456 - Lx7 LINE L1 0 7696 7556 1 647 1038 130 96 0 chr6 8126581 8126758 -141390279 + B2_Mm2 SINE B2 2 195 0 1 647 930 187 192 28 chr6 8126758 8126913 -141390124 - Lx7 LINE L1 -141 7555 7364 1 647 378 0 0 0 chr6 8126914 8126956 -141390081 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 647 180 77 0 0 chr6 8126956 8126981 -141390056 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 647 442 274 79 9 chr6 8127027 8127141 -141389896 + RSINE1 SINE B4 3 124 -41 1 647 1281 96 0 0 chr6 8127143 8127411 -141389626 + (CA)n Simple_repeat Simple_repeat 1 268 0 1 647 213 271 0 0 chr6 8127426 8127474 -141389563 + RSINE1 SINE B4 77 124 -41 1 647 390 120 0 0 chr6 8127476 8127551 -141389486 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 647 633 140 42 12 chr6 8127985 8128151 -141388886 + CT-rich Low_complexity Low_complexity 5 175 0 1 647 414 221 6 15 chr6 8131132 8131239 -141385798 + B1_Mus1 SINE Alu 10 113 -36 1 647 932 59 0 0 chr6 8131284 8131403 -141385634 - B2_Mm2 SINE B2 -62 133 15 1 647 1807 163 19 19 chr6 8131403 8131728 -141385309 + Lx2 LINE L1 6663 6987 -10 1 647 728 99 0 9 chr6 8131728 8131840 -141385197 + (GAAA)n Simple_repeat Simple_repeat 3 113 0 1 647 401 336 14 55 chr6 8132405 8132550 -141384487 - RSINE1 SINE B4 -13 152 14 1 647 4289 126 38 10 chr6 8132738 8133467 -141383570 - RMER6A LTR ERVK -6 750 1 1 647 706 331 115 15 chr6 8133783 8134044 -141382993 + B4A SINE B4 6 292 0 1 647 225 0 0 0 chr6 8134075 8134100 -141382937 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1 647 679 238 176 17 chr6 8134188 8134427 -141382610 + B4A SINE B4 2 278 -14 1 647 409 164 13 58 chr6 8134468 8134623 -141382414 + (CATATA)n Simple_repeat Simple_repeat 1 148 0 1 647 1474 141 140 10 chr6 8135415 8135708 -141381329 - IAPEY3_LTR LTR ERVK -1 331 1 1 647 1175 51 0 0 chr6 8136162 8136300 -141380737 + B1_Mus1 SINE Alu 1 138 -10 1 647 194 0 0 37 chr6 8136300 8136327 -141380710 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 647 661 218 85 58 chr6 8136420 8136875 -141380162 - RMER17C LTR ERVK -13 397 1 1 647 286 347 24 48 chr6 8136875 8136999 -141380038 - RSINE1 SINE B4 -1 164 44 1 647 21 0 0 0 chr6 8137155 8137176 -141379861 + AT_rich Low_complexity Low_complexity 1 21 0 1 647 3357 56 12 2 chr6 8137982 8138413 -141378624 - L1Md_F2 LINE L1 -12 6570 6136 1 647 1262 21 0 0 chr6 8138547 8138691 -141378346 + B1_Mm SINE Alu 2 145 -2 1 647 188 0 74 0 chr6 8138691 8138718 -141378319 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 647 416 226 35 23 chr6 8139184 8139270 -141377767 - B3 SINE B2 -86 130 44 2 647 952 250 5 5 chr6 8139509 8139718 -141377319 + B3 SINE B2 1 209 -7 2 647 285 208 104 0 chr6 8139789 8139885 -141377152 - L1MA5 LINE L1 -27 6273 6168 2 647 1191 180 71 19 chr6 8140018 8140284 -141376753 + Lx2B LINE L1 6708 6987 -13 2 647 1170 290 72 35 chr6 8140288 8140984 -141376053 + L1_Rod LINE L1 4920 5641 -206 2 647 270 0 0 0 chr6 8141046 8141076 -141375961 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 647 499 288 34 51 chr6 8141299 8141492 -141375545 - MER58A DNA MER1_type -2129 291 42 2 647 308 161 0 16 chr6 8142152 8142215 -141374822 + GA-rich Low_complexity Low_complexity 4 65 0 2 647 1070 83 0 48 chr6 8142218 8142407 -141374630 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 647 239 330 67 11 chr6 8142469 8142558 -141374479 - MLT1K LTR MaLR -361 234 141 2 647 758 192 26 0 chr6 8142570 8142726 -141374311 - Lx7 LINE L1 -714 6982 6823 2 647 366 273 11 0 chr6 8142761 8142849 -141374188 - MER58B DNA MER1_type -1 340 252 2 647 393 243 80 45 chr6 8142980 8143092 -141373945 + B1F SINE Alu 33 148 -1 2 647 364 112 67 0 chr6 8143292 8143381 -141373656 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 2 647 375 23 0 0 chr6 8143392 8143436 -141373601 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 647 216 137 78 0 chr6 8143569 8143620 -141373417 + (CAAA)n Simple_repeat Simple_repeat 3 57 0 2 647 359 305 53 43 chr6 8143755 8143964 -141373073 - RLTR42-int LTR ERVK -4122 1400 1190 2 647 306 219 85 110 chr6 8144076 8144194 -141372843 + MER58B DNA MER1_type 226 340 -1 2 647 1286 223 98 20 chr6 8144217 8144615 -141372422 + Lx7 LINE L1 6815 7243 -453 2 647 252 197 13 38 chr6 8144690 8144769 -141372268 + T-rich Low_complexity Low_complexity 4 80 0 2 647 2087 152 108 25 chr6 8144975 8145381 -141371656 - RLTR44B LTR ERVK -9 440 1 2 647 4675 49 7 0 chr6 8145381 8145976 -141371061 - RLTR44-int LTR ERVK 0 2812 2214 2 647 4923 67 1 43 chr6 8146273 8146975 -141370062 - RLTR44-int LTR ERVK -1324 1488 816 2 647 503 152 54 0 chr6 8146996 8147088 -141369949 - RLTR44-int LTR ERVK -2715 97 1 2 647 2030 161 67 69 chr6 8147105 8147539 -141369498 - RLTR44B LTR ERVK -16 433 1 2 647 223 293 69 0 chr6 8147675 8147733 -141369304 + ID4_ SINE ID 16 77 -6 2 647 371 261 62 0 chr6 8147759 8147889 -141369148 - MER53 DNA hAT -25 168 31 2 647 925 176 202 0 chr6 8148047 8148235 -141368802 - URR1A DNA MER1_type 0 226 1 2 647 1878 38 4 8 chr6 8148360 8148598 -141368439 + L1_Mus1 LINE L1 6331 6567 0 2 647 689 115 18 0 chr6 8148634 8148747 -141368290 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 2 647 369 116 0 0 chr6 8149115 8149184 -141367853 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 647 289 307 13 0 chr6 8150993 8151068 -141365969 + ID4 SINE ID 4 79 -4 2 647 252 355 117 70 chr6 8151160 8151502 -141365535 - LTR78 LTR ERV1 -40 1264 907 2 647 1660 163 84 26 chr6 8151548 8151894 -141365143 - ORR1D2 LTR MaLR -1 369 4 2 647 5819 116 74 2 chr6 8152232 8153154 -141363883 - Lx3A LINE L1 0 6981 5994 2 647 554 217 4 127 chr6 8153154 8153408 -141363629 - MTC-int LTR MaLR -733 365 83 2 647 3145 116 12 16 chr6 8153423 8153912 -141363125 - RLTR1C LTR ERV1 -16 487 1 2 647 1552 256 66 10 chr6 8153941 8154335 -141362702 - MTD LTR MaLR -3 416 1 2 647 419 348 0 0 chr6 8154979 8155094 -141361943 + PB1D10 SINE Alu 3 117 0 2 647 1995 136 12 16 chr6 8155152 8155474 -141361563 + ORR1A4 LTR MaLR 1 321 -8 2 647 322 262 143 75 chr6 8155747 8156040 -141360997 - L2 LINE L2 -1269 2150 1838 2 647 3660 123 58 5 chr6 8156180 8156751 -141360286 + MT2B LTR ERVL 1 601 0 2 647 228 35 0 0 chr6 8156767 8156796 -141360241 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2 647 490 255 89 0 chr6 8157483 8157640 -141359397 - Tigger7 DNA MER2_type -25 2466 2296 2 647 661 229 89 11 chr6 8157657 8157847 -141359190 - MER2 DNA MER2_type -41 304 100 2 647 360 111 0 0 chr6 8157853 8157907 -141359130 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 647 461 301 16 8 chr6 8157938 8158062 -141358975 - ID_B1 SINE B4 -21 203 79 2 647 237 299 67 22 chr6 8158037 8158126 -141358911 - MER2 DNA MER2_type -250 95 3 2 647 468 0 0 0 chr6 8158151 8158203 -141358834 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 647 396 324 211 4 chr6 8158295 8158546 -141358491 - Tigger7 DNA MER2_type -2184 307 5 2 647 216 0 0 0 chr6 8158775 8158799 -141358238 + (T)n Simple_repeat Simple_repeat 1 24 0 2 647 29 28 0 0 chr6 8159186 8159222 -141357815 + GC_rich Low_complexity Low_complexity 1 36 0 2 647 292 247 189 43 chr6 8159995 8160234 -141356803 + MER33 DNA MER1_type 50 323 -1 2 647 486 300 19 140 chr6 8160884 8161120 -141355917 - MTE2a LTR MaLR -141 238 31 2 647 198 0 0 0 chr6 8161120 8161142 -141355895 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2 647 1076 69 0 0 chr6 8161142 8161273 -141355764 - B1_Mus2 SINE Alu -14 133 3 2 647 486 300 19 140 chr6 8161273 8161306 -141355731 - MTE2a LTR MaLR -349 30 2 2 647 231 349 94 0 chr6 8161325 8161431 -141355606 - PB1D10 SINE Alu -1 116 1 2 647 309 366 53 8 chr6 8161734 8161866 -141355171 + L2a LINE L2 3284 3421 -5 2 647 867 316 18 27 chr6 8162477 8162701 -141354336 + B4A SINE B4 6 227 -65 2 647 269 127 159 0 chr6 8162746 8162809 -141354228 + Lx8 LINE L1 7389 7461 -12 2 647 768 213 30 46 chr6 8163235 8163432 -141353605 + B3A SINE B2 5 198 0 2 647 21 82 0 0 chr6 8163926 8163975 -141353062 + AT_rich Low_complexity Low_complexity 1 49 0 2 647 26 50 0 0 chr6 8166304 8166344 -141350693 + AT_rich Low_complexity Low_complexity 1 40 0 2 647 180 0 0 0 chr6 8167283 8167303 -141349734 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 647 396 312 66 32 chr6 8168097 8168384 -141348653 - RSINE1 SINE B4 -10 282 10 2 647 1306 77 33 6 chr6 8168489 8168672 -141348365 - B2_Mm1t SINE B2 -5 188 1 2 647 912 266 5 19 chr6 8169228 8169435 -141347602 + ID_B1 SINE B4 20 223 -1 2 647 363 247 13 0 chr6 8169553 8169630 -141347407 + ID4_ SINE ID 3 80 -3 2 647 451 250 34 43 chr6 8169921 8170038 -141346999 - B1_Mur2 SINE Alu -1 148 33 2 647 328 309 166 22 chr6 8170123 8170262 -141346775 - MLT1E1A LTR MaLR -70 584 426 2 647 677 305 129 41 chr6 8170445 8170856 -141346181 - MLT1E1A LTR MaLR -229 451 5 2 647 180 321 19 0 chr6 8171463 8171516 -141345521 - L2a LINE L2 -80 3346 3293 2 647 381 193 91 0 chr6 8171736 8171824 -141345213 - MTD LTR MaLR -128 291 196 2 647 726 130 0 9 chr6 8171826 8171942 -141345095 - B1_Mur2 SINE Alu -1 148 34 2 647 481 239 226 0 chr6 8171919 8172078 -141344959 - MTD LTR MaLR -213 206 12 2 647 486 0 0 0 chr6 8173179 8173233 -141343804 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 647 356 141 31 15 chr6 8174296 8174361 -141342676 - HAL1-3A_ME LINE L1 -817 2041 1976 2 647 23 0 0 0 chr6 8175720 8175743 -141341294 + AT_rich Low_complexity Low_complexity 1 23 0 2 647 246 284 152 27 chr6 8175763 8175875 -141341162 + MIRc SINE MIR 29 154 -114 2 647 929 195 52 24 chr6 8176280 8176490 -141340547 - B3 SINE B2 0 216 1 2 647 905 276 24 17 chr6 8177470 8177758 -141339279 + B4A SINE B4 1 290 -2 2 647 330 311 124 70 chr6 8178960 8179202 -141337835 - L1MEc LINE L1 -4008 2407 2153 2 647 334 296 88 53 chr6 8179391 8179619 -141337418 - L1MEc LINE L1 -4355 2045 1810 2 647 479 214 141 16 chr6 8180093 8180221 -141336816 - B1_Mur1 SINE Alu 0 149 6 2 647 207 272 62 0 chr6 8181387 8181468 -141335569 + T-rich Low_complexity Low_complexity 2 87 0 2 647 1220 55 0 0 chr6 8181870 8182016 -141335021 - B1_Mus2 SINE Alu -1 146 1 2 647 241 347 0 0 chr6 8182256 8182328 -141334709 - ID4_ SINE ID -10 73 2 2 647 227 300 136 12 chr6 8182338 8182369 -141334668 - PB1 SINE Alu -2 125 36 2 647 253 184 20 0 chr6 8182369 8182418 -141334619 - 4.5SRNA scRNA scRNA -13 81 32 2 647 446 246 163 6 chr6 8182488 8182700 -141334337 - MTEa LTR MaLR 0 379 105 2 647 512 217 26 0 chr6 8183945 8184060 -141332977 + PB1D9 SINE Alu 3 120 0 2 647 571 227 22 50 chr6 8184568 8184707 -141332330 + B1_Mur1 SINE Alu 2 136 -13 2 647 908 108 0 33 chr6 8184962 8185115 -141331922 - B1_Mus1 SINE Alu 0 148 1 2 647 22 0 0 0 chr6 8186245 8186267 -141330770 + AT_rich Low_complexity Low_complexity 1 22 0 2 647 264 59 0 0 chr6 8186998 8187032 -141330005 + (T)n Simple_repeat Simple_repeat 1 34 0 2 647 526 107 48 9 chr6 8187042 8187151 -141329886 - B1_Mus1 SINE Alu 0 120 2 2 647 22 70 0 0 chr6 8187503 8187546 -141329491 + AT_rich Low_complexity Low_complexity 1 43 0 2 647 1047 82 0 27 chr6 8187635 8187773 -141329264 + B1_Mus2 SINE Alu 2 137 -10 2 647 193 0 94 0 chr6 8187773 8187805 -141329232 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 647 1047 82 0 27 chr6 8187805 8187816 -141329221 + B1_Mus2 SINE Alu 138 147 0 2 647 254 292 126 37 chr6 8187922 8188057 -141328980 - MIR SINE MIR -10 252 106 2 647 729 197 8 0 chr6 8188637 8188769 -141328268 - B1_Mus1 SINE Alu -13 135 3 2 647 28 48 0 0 chr6 8189643 8189685 -141327352 + AT_rich Low_complexity Low_complexity 1 42 0 2 647 23 0 0 0 chr6 8190128 8190151 -141326886 + AT_rich Low_complexity Low_complexity 1 23 0 2 647 1045 85 43 0 chr6 8190159 8190300 -141326737 - B1_Mus2 SINE Alu 0 147 1 2 647 213 227 106 0 chr6 8190703 8190769 -141326268 - B1_Mur4 SINE Alu -59 91 19 2 647 873 138 89 28 chr6 8190869 8191048 -141325989 + B2_Mm2 SINE B2 1 190 -5 2 647 1461 57 0 30 chr6 8191802 8192001 -141325036 + B2_Mm2 SINE B2 2 194 -1 2 647 266 242 0 57 chr6 8192145 8192215 -141324822 - PB1D7 SINE Alu -37 83 18 2 647 396 244 68 43 chr6 8193328 8193491 -141323546 + Lx8 LINE L1 7236 7402 -71 3 647 228 271 120 24 chr6 8193560 8193663 -141323374 - MLT2B4 LTR ERVL -168 388 274 3 647 1623 42 0 0 chr6 8193663 8193854 -141323183 + B2_Mm1a SINE B2 1 191 -2 3 647 228 271 120 24 chr6 8193854 8193875 -141323162 - MLT2B4 LTR ERVL -283 273 253 3 647 342 257 78 10 chr6 8194028 8194130 -141322907 + PB1D7 SINE Alu 12 120 0 3 647 4771 53 2 3 chr6 8195004 8195592 -141321445 + LTRIS_Mus LTR ERV1 1 587 0 3 647 1516 145 15 11 chr6 8195592 8195864 -141321173 + MuRRS4-int LTR ERV1 1 273 -4417 3 647 2827 110 2 27 chr6 8195929 8196408 -141320629 + MuRRS4-int LTR ERV1 519 1109 -3581 3 647 3006 248 54 59 chr6 8196594 8198164 -141318873 + MuRRS4-int LTR ERV1 1109 2791 -2272 3 647 1962 117 43 26 chr6 8198212 8198563 -141318474 + MuRRS4-int LTR ERV1 3747 4103 -587 3 647 666 210 124 5 chr6 8198560 8198761 -141318276 + MuRRS4-int LTR ERV1 1555 1779 -3284 3 647 3810 103 21 14 chr6 8198770 8199341 -141317696 - MuRRS-int LTR ERV1 0 4690 4116 3 647 672 221 15 0 chr6 8199508 8199639 -141317398 + ETnERV2-int LTR ERVK 7070 7202 -204 3 647 229 309 26 109 chr6 8200365 8200521 -141316516 - RLTR8 LTR ERVK 0 365 223 3 647 302 80 20 0 chr6 8200752 8200802 -141316235 - B2_Mm1t SINE B2 -15 178 128 3 647 687 58 0 0 chr6 8200794 8200881 -141316156 - B2_Mm2 SINE B2 -106 89 3 3 647 372 180 45 0 chr6 8200965 8201054 -141315983 + MYSERV-int LTR ERVK 1680 1772 -4778 3 647 306 191 0 0 chr6 8201084 8201147 -141315890 + MYSERV-int LTR ERVK 2940 3002 -2359 3 647 189 0 0 0 chr6 8201164 8201185 -141315852 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 3 647 1342 269 100 26 chr6 8201240 8201881 -141315156 + MYSERV-int LTR ERVK 4111 4798 -1752 3 647 370 247 228 25 chr6 8202009 8202167 -141314870 + RLTR12B LTR ERVK 47 236 -292 3 647 1120 262 64 68 chr6 8202259 8202713 -141314324 - RLTR12B LTR ERVK -31 497 46 3 647 369 0 0 0 chr6 8203064 8203105 -141313932 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 647 282 305 184 68 chr6 8203705 8203895 -141313142 - ORR1D2 LTR MaLR -150 220 9 3 647 2538 330 137 37 chr6 8203884 8205277 -141311760 - MTE-int LTR MaLR -34 1546 14 3 647 250 316 114 29 chr6 8205426 8205566 -141311471 - ORR1E LTR MaLR -152 207 56 3 647 243 293 114 84 chr6 8206027 8206254 -141310783 - MLT2B5 LTR ERVL -39 516 283 3 647 26 30 0 0 chr6 8206473 8206506 -141310531 + AT_rich Low_complexity Low_complexity 1 33 0 3 647 21 36 0 0 chr6 8207235 8207263 -141309774 + AT_rich Low_complexity Low_complexity 1 28 0 3 647 360 0 0 0 chr6 8207269 8207309 -141309728 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 647 264 229 0 14 chr6 8207910 8207981 -141309056 - MER53 DNA hAT -5 188 119 3 647 1179 34 0 20 chr6 8208118 8208267 -141308770 - B1_Mus2 SINE Alu -1 146 1 3 647 1303 313 45 89 chr6 8210589 8211642 -141305395 - Lx8 LINE L1 -892 6581 5535 3 647 554 243 83 7 chr6 8211660 8211805 -141305232 - MTD LTR MaLR -42 377 222 3 647 195 42 0 0 chr6 8211805 8211829 -141305208 + (TTAGGG)n Simple_repeat Simple_repeat 5 28 0 3 647 331 308 24 49 chr6 8211832 8211955 -141305082 - L1MEd LINE L1 -5413 706 587 3 647 501 182 0 0 chr6 8212240 8212339 -141304698 + (TA)n Simple_repeat Simple_repeat 1 99 0 3 647 2556 79 0 21 chr6 8212583 8212957 -141304080 + L1Md_F2 LINE L1 6217 6582 0 3 647 821 292 92 19 chr6 8213106 8213521 -141303516 - L1MB2 LINE L1 -6 6165 5721 3 647 1273 34 0 0 chr6 8214056 8214203 -141302834 + B1_Mm SINE Alu 1 147 0 3 647 207 88 0 0 chr6 8214203 8214237 -141302800 + (A)n Simple_repeat Simple_repeat 1 34 0 3 647 423 0 0 0 chr6 8214289 8214336 -141302701 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 647 589 236 56 0 chr6 8216143 8216304 -141300733 - Lx8 LINE L1 -623 6850 6681 3 647 729 271 133 30 chr6 8216756 8217186 -141299851 - Lx8 LINE L1 -418 7055 6582 3 647 220 194 0 0 chr6 8219160 8219196 -141297841 - B1F2 SINE Alu -104 45 10 3 647 378 0 0 0 chr6 8219266 8219308 -141297729 + (T)n Simple_repeat Simple_repeat 1 42 0 3 647 406 175 32 163 chr6 8219432 8219555 -141297482 + B1F2 SINE Alu 3 109 -40 3 647 219 69 0 0 chr6 8220056 8220085 -141296952 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 3 647 1986 139 60 106 chr6 8222431 8222882 -141294155 - RLTR23 LTR ERV1 0 430 1 3 647 7300 40 27 0 chr6 8222911 8223801 -141293236 + L1Md_F2 LINE L1 5668 6581 -1 3 647 32 26 0 0 chr6 8223979 8224018 -141293019 + AT_rich Low_complexity Low_complexity 1 39 0 3 647 856 227 150 51 chr6 8224356 8224649 -141292388 - ORR1D2 LTR MaLR 0 370 49 3 647 309 109 0 0 chr6 8226032 8226078 -141290959 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 3 647 244 94 0 36 chr6 8227180 8227235 -141289802 + (TTTTA)n Simple_repeat Simple_repeat 4 56 0 3 647 395 231 84 28 chr6 8227248 8227355 -141289682 + PB1D9 SINE Alu 2 114 -6 3 647 463 348 64 23 chr6 8227409 8227674 -141289363 + MLT1J LTR MaLR 237 512 0 3 647 380 286 131 62 chr6 8227932 8228285 -141288752 - MLT1A1 LTR MaLR 0 467 21 3 647 886 161 12 12 chr6 8228492 8228656 -141288381 + B2_Mm2 SINE B2 1 164 -31 3 647 37 52 0 0 chr6 8229706 8229764 -141287273 + AT_rich Low_complexity Low_complexity 1 58 0 3 647 284 0 28 0 chr6 8229906 8229942 -141287095 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 647 264 100 0 0 chr6 8230906 8230946 -141286091 + (T)n Simple_repeat Simple_repeat 1 40 0 3 647 563 136 155 0 chr6 8230946 8231049 -141285988 - PB1D9 SINE Alu 0 120 2 3 647 219 255 0 0 chr6 8231186 8231233 -141285804 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 3 647 729 225 35 0 chr6 8231446 8231619 -141285418 + URR1B DNA MER1_type 45 223 -2 3 647 940 78 16 0 chr6 8231914 8232043 -141284994 - B1_Mus1 SINE Alu 0 148 18 3 647 364 265 53 99 chr6 8231917 8232068 -141284969 - B4A SINE B4 -68 224 81 3 647 839 234 25 0 chr6 8232071 8232268 -141284769 - B3 SINE B2 -14 202 1 3 647 248 353 16 72 chr6 8232606 8232731 -141284306 + MLT1A1 LTR MaLR 268 385 -23 3 647 254 351 103 82 chr6 8234098 8234380 -141282657 - B4 SINE B4 -2 290 3 3 647 607 300 144 23 chr6 8234681 8234937 -141282100 - B4A SINE B4 0 292 6 3 647 581 264 190 0 chr6 8234974 8235148 -141281889 - B3 SINE B2 -7 209 3 3 647 559 101 40 0 chr6 8236115 8236214 -141280823 + (TATG)n Simple_repeat Simple_repeat 1 103 0 3 647 402 294 49 56 chr6 8236222 8236366 -141280671 - RSINE1 SINE B4 -18 147 5 3 647 243 0 0 0 chr6 8236366 8236393 -141280644 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 647 1575 153 181 15 chr6 8236396 8236728 -141280309 + ORR1B1 LTR MaLR 7 393 -1 3 647 336 261 22 198 chr6 8236745 8236880 -141280157 - B1F SINE Alu -12 137 11 3 647 317 291 29 0 chr6 8237354 8237457 -141279580 + L4 LINE RTE 328 433 -1596 3 647 423 0 0 0 chr6 8237743 8237790 -141279247 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 647 466 202 123 19 chr6 8238445 8238551 -141278486 - RSINE1 SINE B4 -43 122 6 3 647 634 282 106 41 chr6 8238623 8238861 -141278176 - B4 SINE B4 -6 286 46 3 647 258 105 0 0 chr6 8239894 8239932 -141277105 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 647 306 0 0 0 chr6 8240040 8240074 -141276963 + (CATA)n Simple_repeat Simple_repeat 2 35 0 3 647 762 309 35 41 chr6 8240093 8240383 -141276654 + Lx8 LINE L1 6990 7409 -235 3 647 570 286 0 48 chr6 8240417 8240564 -141276473 - B3 SINE B2 -76 140 1 3 647 2591 303 59 47 chr6 8240587 8242095 -141274942 - Lx8 LINE L1 -489 6984 5426 3 647 1419 44 44 0 chr6 8242095 8242276 -141274761 - B2_Mm2 SINE B2 -5 190 2 3 647 1246 271 59 27 chr6 8242276 8242305 -141274732 - Lx8 LINE L1 -422 5425 5392 3 647 254 0 83 0 chr6 8242305 8242341 -141274696 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 3 647 1246 271 59 27 chr6 8242341 8242435 -141274602 - Lx8 LINE L1 -456 5391 5296 3 647 435 223 26 28 chr6 8242448 8242619 -141274418 - Lx8 LINE L1 -1014 5126 4904 3 647 304 291 115 12 chr6 8243011 8243120 -141273917 - MIR SINE MIR -145 123 15 3 647 351 0 0 0 chr6 8244595 8244634 -141272403 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 647 468 277 48 62 chr6 8245864 8246010 -141271027 + ID_B1 SINE B4 81 224 0 3 647 325 307 91 59 chr6 8246215 8246468 -141270569 - L1ME3B LINE L1 -212 6028 5768 3 647 441 300 105 95 chr6 8246650 8247059 -141269978 + Lx9 LINE L1 7210 7622 -22 3 647 24 32 0 0 chr6 8248376 8248407 -141268630 + AT_rich Low_complexity Low_complexity 1 31 0 3 647 209 197 29 43 chr6 8248494 8248563 -141268474 + T-rich Low_complexity Low_complexity 5 72 0 3 647 590 0 14 0 chr6 8248709 8248779 -141268258 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 647 204 250 21 0 chr6 8248784 8248832 -141268205 + MER5B DNA MER1_type 128 176 -2 3 647 1196 86 45 6 chr6 8249823 8249999 -141267038 + B2_Mm2 SINE B2 1 183 -12 3 647 909 52 0 0 chr6 8250001 8250117 -141266920 + B1_Mus1 SINE Alu 32 147 -1 3 647 181 307 26 13 chr6 8250518 8250594 -141266443 - MER5A DNA MER1_type -63 126 50 3 647 616 230 78 0 chr6 8250721 8250912 -141266125 - L1M2 LINE L1 -762 5538 5333 3 647 747 249 142 36 chr6 8250965 8251407 -141265630 - L1M2 LINE L1 -900 5243 4755 3 647 1186 64 6 0 chr6 8251664 8251821 -141265216 + B2_Mm2 SINE B2 1 158 -37 3 647 207 0 0 0 chr6 8251822 8251845 -141265192 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 647 4646 81 121 50 chr6 8251887 8252284 -141264753 + L1VL2 LINE L1 194 661 -5674 3 647 1136 75 7 0 chr6 8252284 8252430 -141264607 + B1_Mus2 SINE Alu 1 147 0 3 647 5841 76 73 35 chr6 8252430 8253048 -141263989 + L1VL2 LINE L1 662 1264 -2351 3 647 1108 95 0 0 chr6 8253048 8253196 -141263841 + B1_Mus1 SINE Alu 1 148 0 3 647 5841 72 37 24 chr6 8253196 8253753 -141263284 + L1VL2 LINE L1 1265 1826 -1789 3 647 312 247 0 0 chr6 8253897 8253970 -141263067 - PB1D10 SINE Alu -2 115 43 3 647 234 333 37 9 chr6 8255691 8255800 -141261237 + MIRb SINE MIR 66 177 -91 3 647 698 171 73 0 chr6 8255866 8255989 -141261048 + B1_Mur3 SINE Alu 5 136 -13 4 647 195 42 0 0 chr6 8255989 8256013 -141261024 + (T)n Simple_repeat Simple_repeat 1 24 0 4 647 376 366 114 31 chr6 8256072 8256396 -141260641 - L2b LINE L2 -1 3374 3024 4 647 523 195 322 4 chr6 8257213 8257334 -141259703 - Lx9 LINE L1 -1 7643 7517 4 647 588 84 0 0 chr6 8257334 8257417 -141259620 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 80 523 195 322 4 chr6 8257417 8257537 -141259500 - Lx9 LINE L1 -128 7516 7326 4 648 788 167 137 0 chr6 8259171 8259339 -141257698 + URR1A DNA MER1_type 33 223 -3 4 648 342 280 113 49 chr6 8259339 8259401 -141257636 - CYRA11_Mm Unknown Y-chromosome -425 192 118 4 648 339 333 73 0 chr6 8259820 8260081 -141256956 + L1MA7 LINE L1 5987 6266 -25 4 648 416 290 18 18 chr6 8260422 8260531 -141256506 - PB1D7 SINE Alu 0 120 12 4 648 1307 241 168 9 chr6 8261114 8261542 -141255495 - Lx8 LINE L1 -4 7469 6974 4 648 843 273 71 42 chr6 8261555 8261608 -141255429 - Lx8 LINE L1 -553 6920 6873 4 648 1830 157 142 0 chr6 8261608 8261953 -141255084 - ORR1B1 LTR MaLR 0 394 1 4 648 843 273 71 42 chr6 8261953 8262182 -141254855 - Lx8 LINE L1 -601 6872 6630 4 648 668 151 165 23 chr6 8263251 8263427 -141253610 - B3 SINE B2 0 216 16 4 648 432 0 0 0 chr6 8263752 8263800 -141253237 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 648 386 331 33 0 chr6 8263836 8263957 -141253080 + MIR SINE MIR 31 155 -107 4 648 472 273 73 83 chr6 8263968 8264172 -141252865 + B4A SINE B4 91 292 0 4 648 257 337 108 18 chr6 8264727 8264893 -141252144 + MIR SINE MIR 68 248 -14 4 648 239 181 13 53 chr6 8266872 8266948 -141250089 - Lx9 LINE L1 -4 7640 7568 4 648 414 0 0 0 chr6 8266977 8267023 -141250014 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 648 639 200 67 0 chr6 8267023 8267173 -141249864 - Lx9 LINE L1 -166 7478 7319 4 648 863 210 35 15 chr6 8267197 8267395 -141249642 - Lx9 LINE L1 -383 7261 7060 4 648 180 281 110 110 chr6 8268012 8268112 -141248925 - MIRm SINE MIR -22 254 155 4 648 1272 108 11 0 chr6 8268821 8269007 -141248030 - B2_Mm1t SINE B2 -4 189 2 4 648 3208 202 44 3 chr6 8269407 8270018 -141247019 - Lx9 LINE L1 -697 6947 6312 4 648 692 256 0 53 chr6 8270101 8270331 -141246706 - Lx9 LINE L1 -1598 6046 5827 4 648 13176 152 72 2 chr6 8270582 8272982 -141244055 + L1_Mur1 LINE L1 3093 5659 -227 4 648 29 0 0 0 chr6 8274465 8274494 -141242543 + AT_rich Low_complexity Low_complexity 1 29 0 4 648 7592 75 2 4 chr6 8274494 8275812 -141241225 - L1_Mus1 LINE L1 0 6567 5252 4 648 29510 111 19 31 chr6 8275824 8282201 -141234836 - L1_Mus1 LINE L1 0 6567 294 4 648 489 34 0 0 chr6 8282693 8282752 -141234285 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 648 819 84 8 0 chr6 8283214 8283358 -141233679 + L1_Mus1 LINE L1 6442 6567 0 4 648 21 36 0 0 chr6 8283401 8283429 -141233608 + AT_rich Low_complexity Low_complexity 1 28 0 4 648 2083 87 18 35 chr6 8284737 8285116 -141231921 - RLTR10A LTR ERVK 0 359 1 4 648 637 360 46 25 chr6 8285241 8285526 -141231511 - B4A SINE B4 0 292 2 4 648 2159 88 36 0 chr6 8285596 8285904 -141231133 - ORR1A2 LTR MaLR -8 319 1 4 648 802 305 67 29 chr6 8287243 8287745 -141229292 + Arthur1 DNA Tip100 2937 3225 -722 4 648 7408 86 10 2 chr6 8287989 8289264 -141227773 - L1_Mus4 LINE L1 0 6636 5353 4 648 302 311 34 0 chr6 8289361 8289480 -141227557 + L2 LINE L2 2774 2896 -523 4 648 382 327 18 54 chr6 8289816 8289984 -141227053 + RSINE1 SINE B4 4 165 0 4 648 476 70 113 0 chr6 8290808 8290879 -141226158 + B1_Mm SINE Alu 69 147 0 4 648 25 75 0 0 chr6 8292202 8292255 -141224782 + AT_rich Low_complexity Low_complexity 1 53 0 4 648 252 400 32 8 chr6 8292359 8292485 -141224552 + MLT1H1 LTR MaLR 196 324 -231 4 648 383 295 100 39 chr6 8292618 8292798 -141224239 + MLT1H1 LTR MaLR 357 547 -8 4 648 203 263 74 120 chr6 8293377 8293485 -141223552 - MER91B DNA Tip100 -61 129 27 4 648 364 278 104 8 chr6 8295235 8295369 -141221668 + B1F SINE Alu 1 147 -2 4 648 333 47 0 0 chr6 8295371 8295414 -141221623 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 648 236 93 47 0 chr6 8295879 8295922 -141221115 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 4 648 752 207 7 15 chr6 8296017 8296154 -141220883 + B1_Mur4 SINE Alu 1 136 -14 4 648 876 63 25 117 chr6 8296224 8296386 -141220651 + B1_Mus2 SINE Alu 1 147 0 4 648 580 293 115 21 chr6 8296642 8296973 -141220064 - Lx9 LINE L1 -218 7426 7065 4 648 236 270 21 154 chr6 8298208 8298396 -141218641 - L2a LINE L2 0 3426 3264 4 648 293 312 136 12 chr6 8299914 8300076 -141216961 - MIR SINE MIR -48 214 33 4 648 422 18 18 0 chr6 8301890 8301945 -141215092 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 648 22 35 0 0 chr6 8302223 8302252 -141214785 + AT_rich Low_complexity Low_complexity 1 29 0 4 648 195 42 0 0 chr6 8304183 8304207 -141212830 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 648 229 240 78 68 chr6 8304466 8304569 -141212468 + RLTR13A2 LTR ERVK 57 160 -798 4 648 30 27 0 0 chr6 8305532 8305569 -141211468 + AT_rich Low_complexity Low_complexity 1 37 0 4 648 301 251 132 34 chr6 8305593 8305920 -141211117 + L1M4 LINE L1 5115 5470 -708 4 648 1100 117 27 37 chr6 8306166 8306353 -141210684 - B2_Mm2 SINE B2 -10 185 1 4 648 4121 243 69 10 chr6 8306365 8307515 -141209522 - Lx7 LINE L1 -24 7672 6456 4 648 278 293 29 29 chr6 8307736 8307873 -141209164 - L1ME3A LINE L1 -254 5919 5783 4 648 301 342 45 29 chr6 8310311 8310624 -141206413 - L1MD3 LINE L1 -275 7720 7403 4 648 291 286 156 15 chr6 8310616 8310879 -141206158 - L1MD3 LINE L1 -782 7260 6961 4 648 38 68 0 0 chr6 8313738 8313811 -141203226 + AT_rich Low_complexity Low_complexity 1 73 0 4 648 2059 118 13 0 chr6 8315413 8315718 -141201319 - RLTR27 LTR ERVK 0 309 1 4 648 226 146 55 0 chr6 8315963 8316018 -141201019 + T-rich Low_complexity Low_complexity 3 60 0 4 648 1228 48 0 0 chr6 8316018 8316165 -141200872 - B1_Mus2 SINE Alu 0 147 1 4 648 570 291 17 30 chr6 8316322 8316537 -141200500 - MLT1A0 LTR MaLR 0 374 165 4 648 1658 144 58 70 chr6 8316544 8316577 -141200460 - ORR1B1 LTR MaLR -8 386 360 4 648 1494 69 0 0 chr6 8316577 8316766 -141200271 + B2_Mm1t SINE B2 1 189 -4 4 648 1658 144 58 70 chr6 8316766 8316778 -141200259 - ORR1B1 LTR MaLR -35 359 359 4 648 192 40 0 0 chr6 8316778 8316803 -141200234 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 648 1658 144 58 70 chr6 8316803 8316977 -141200060 - ORR1B1 LTR MaLR -35 359 175 4 648 6997 25 4 0 chr6 8316977 8317777 -141199260 - RLTR13B4 LTR ERVK 0 803 1 4 648 1658 144 58 70 chr6 8317777 8317898 -141199139 - ORR1B1 LTR MaLR -220 174 48 4 648 321 314 86 43 chr6 8317888 8318051 -141198986 - MLT1A0 LTR MaLR -234 174 5 4 648 511 282 94 17 chr6 8318172 8318352 -141198685 - MIRb SINE MIR -68 200 7 4 648 435 38 0 0 chr6 8318662 8318715 -141198322 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 648 212 189 37 19 chr6 8319329 8319383 -141197654 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 648 1963 191 245 6 chr6 8319388 8320047 -141196990 - Lx9 LINE L1 -26 7618 6804 4 648 754 260 22 6 chr6 8320784 8320966 -141196071 + MER58A DNA MER1_type 34 218 -6 4 648 23 68 0 0 chr6 8322590 8322634 -141194403 + AT_rich Low_complexity Low_complexity 1 44 0 4 648 258 358 0 0 chr6 8324749 8324844 -141192193 - L2a LINE L2 0 3426 3332 4 648 916 289 79 35 chr6 8325059 8325374 -141191663 - MLT1A0 LTR MaLR -3 362 34 4 648 231 330 83 37 chr6 8325924 8326141 -141190896 + L2 LINE L2 2369 2595 -824 4 648 423 149 0 0 chr6 8329445 8329519 -141187518 + (TTGG)n Simple_repeat Simple_repeat 1 74 0 4 648 466 321 61 0 chr6 8329528 8329659 -141187378 - B1F SINE Alu -10 139 1 4 648 217 240 16 16 chr6 8329743 8329870 -141187167 + (TATATG)n Simple_repeat Simple_repeat 2 128 0 4 648 214 245 12 35 chr6 8329911 8330080 -141186957 + (TATATG)n Simple_repeat Simple_repeat 2 166 0 4 648 21 0 0 0 chr6 8330613 8330634 -141186403 + AT_rich Low_complexity Low_complexity 1 21 0 4 648 3225 255 84 22 chr6 8330880 8331004 -141186033 - Lx9 LINE L1 -5 7639 7487 4 648 543 81 0 0 chr6 8331004 8331090 -141185947 + (TG)n Simple_repeat Simple_repeat 1 86 0 4 648 3225 255 84 22 chr6 8331090 8332019 -141185018 - Lx9 LINE L1 -158 7486 6521 4 648 441 0 0 0 chr6 8332971 8333020 -141184017 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 648 320 346 0 0 chr6 8333021 8333102 -141183935 - RSINE1 SINE B4 -17 148 68 4 648 23 0 0 0 chr6 8333773 8333796 -141183241 + AT_rich Low_complexity Low_complexity 1 23 0 4 648 32771 84 7 2 chr6 8333910 8339375 -141177662 - L1Md_F2 LINE L1 -2 6580 1084 4 648 462 278 34 14 chr6 8339384 8339401 -141177636 - ID_B1 SINE B4 0 224 125 4 648 789 163 0 0 chr6 8339401 8339524 -141177513 - B1_Mus2 SINE Alu -24 123 1 4 648 232 204 20 0 chr6 8339488 8339537 -141177500 - MT2B LTR ERVL -308 293 244 4 648 2458 203 58 4 chr6 8339537 8340071 -141176966 - L1Md_F LINE L1 -5465 1054 492 4 648 948 136 14 0 chr6 8340158 8340298 -141176739 + B1_Mus1 SINE Alu 1 142 -6 4 648 208 0 0 59 chr6 8340299 8340333 -141176704 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 648 819 30 0 20 chr6 8341327 8341429 -141175608 - L1Md_F2 LINE L1 -113 5770 5671 4 648 6991 38 4 0 chr6 8341429 8342213 -141174824 + L1Md_F2 LINE L1 5784 6570 -12 4 648 461 210 32 32 chr6 8342213 8342239 -141174798 - L1M5 LINE L1 -538 5702 5676 4 648 501 254 60 0 chr6 8342939 8343073 -141173964 - B1F2 SINE Alu -1 148 7 4 648 250 238 11 45 chr6 8344143 8344231 -141172806 + CT-rich Low_complexity Low_complexity 2 86 0 4 648 429 211 97 63 chr6 8345522 8345760 -141171277 - Lx7 LINE L1 0 7696 7451 4 648 351 0 0 0 chr6 8345795 8345834 -141171203 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 648 311 269 72 41 chr6 8345840 8345937 -141171100 - PB1D7 SINE Alu -1 119 20 4 648 537 16 0 0 chr6 8346070 8346132 -141170905 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 4 648 3023 65 124 9 chr6 8346138 8346557 -141170480 - Lx3_Mus LINE L1 -16 6993 6527 4 648 22 70 0 0 chr6 8347059 8347102 -141169935 + AT_rich Low_complexity Low_complexity 1 43 0 5 648 358 330 109 20 chr6 8347253 8347494 -141169543 + B4 SINE B4 37 283 -9 5 648 306 0 0 0 chr6 8347494 8347528 -141169509 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 648 341 340 57 80 chr6 8347528 8347548 -141169489 + B4A SINE B4 274 292 0 5 648 1243 74 0 0 chr6 8348232 8348380 -141168657 - B1_Mus1 SINE Alu 0 148 1 5 648 286 261 14 0 chr6 8349539 8349608 -141167429 + B3A SINE B2 1 70 -128 5 648 261 0 0 0 chr6 8349615 8349644 -141167393 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 648 483 48 0 0 chr6 8349644 8349705 -141167332 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 648 541 242 15 15 chr6 8350763 8350893 -141166144 - Lx6 LINE L1 -623 6837 6708 5 648 3915 204 101 0 chr6 8350862 8350985 -141166052 + Lx6 LINE L1 6609 6739 -721 5 648 462 18 0 0 chr6 8350985 8351040 -141165997 + (TAA)n Simple_repeat Simple_repeat 1 55 0 5 648 3915 204 101 0 chr6 8351040 8351679 -141165358 + Lx6 LINE L1 6740 7447 -13 5 648 425 287 66 0 chr6 8351830 8351966 -141165071 - B1_Mus2 SINE Alu -2 145 1 5 648 1158 71 0 0 chr6 8352204 8352344 -141164693 + B1_Mus2 SINE Alu 2 141 -6 5 648 263 261 30 30 chr6 8352896 8352963 -141164074 + ID4 SINE ID 9 75 -8 5 648 690 284 85 14 chr6 8353518 8353811 -141163226 - MLT1A LTR MaLR -4 370 57 5 648 247 365 0 0 chr6 8354100 8354174 -141162863 - ID4_ SINE ID -9 74 1 5 648 21 36 0 0 chr6 8354727 8354755 -141162282 + AT_rich Low_complexity Low_complexity 1 28 0 5 648 467 252 168 0 chr6 8354999 8355118 -141161919 + B1_Mur2 SINE Alu 3 141 -8 5 648 760 233 133 4 chr6 8356930 8357194 -141159843 - Charlie2b DNA MER1_type -99 2683 2385 5 648 260 270 112 133 chr6 8357194 8357512 -141159525 - MLT1A0 LTR MaLR 0 365 57 5 648 374 265 93 86 chr6 8357561 8357829 -141159208 - Charlie2b DNA MER1_type -400 2382 2113 5 648 1109 258 132 37 chr6 8358103 8358723 -141158314 - L1MB7 LINE L1 -227 5957 5279 5 648 301 255 45 16 chr6 8358734 8358860 -141158177 + B3A SINE B2 2 213 -3 5 648 327 288 36 0 chr6 8358874 8358985 -141158052 - L1MB7 LINE L1 -885 5261 5147 5 648 901 179 11 39 chr6 8358997 8359177 -141157860 - B3 SINE B2 -2 214 40 5 648 210 149 328 0 chr6 8359120 8359187 -141157850 - ID_B1 SINE B4 -117 107 19 5 648 1040 323 97 11 chr6 8359212 8359954 -141157083 - L1MB7 LINE L1 -1018 5128 4323 5 648 1222 224 122 42 chr6 8360446 8360800 -141156237 - ORR1C2 LTR MaLR -2 382 1 5 648 414 0 0 0 chr6 8361076 8361122 -141155915 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 648 195 100 0 0 chr6 8361441 8361471 -141155566 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 648 697 267 51 51 chr6 8361496 8361788 -141155249 - B4A SINE B4 0 292 1 5 648 566 253 107 68 chr6 8361792 8362072 -141154965 - L1MB7 LINE L1 -1818 4328 4038 5 648 255 319 198 46 chr6 8362110 8362347 -141154690 + B4 SINE B4 2 274 -18 5 648 38 0 0 0 chr6 8362486 8362524 -141154513 + AT_rich Low_complexity Low_complexity 1 38 0 5 648 180 0 0 0 chr6 8363442 8363462 -141153575 + (CACCC)n Simple_repeat Simple_repeat 4 23 0 5 648 229 211 0 0 chr6 8364662 8364700 -141152337 - B3 SINE B2 -141 75 38 5 648 1289 41 0 0 chr6 8366282 8366429 -141150608 - B1_Mus1 SINE Alu 0 148 2 5 648 564 274 194 29 chr6 8366469 8366815 -141150222 + L1MB4 LINE L1 5726 6127 -53 5 648 698 257 21 0 chr6 8367267 8367411 -141149626 + RSINE1 SINE B4 3 149 -16 5 648 306 0 0 0 chr6 8367427 8367461 -141149576 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 648 279 0 0 0 chr6 8367461 8367491 -141149546 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 648 305 109 18 0 chr6 8368121 8368176 -141148861 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 648 249 182 0 0 chr6 8370145 8370200 -141146837 + CT-rich Low_complexity Low_complexity 3 57 0 5 648 291 54 0 0 chr6 8370915 8370952 -141146085 + (GGA)n Simple_repeat Simple_repeat 2 38 0 5 648 201 33 100 0 chr6 8371697 8371727 -141145310 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 5 648 800 179 20 20 chr6 8373618 8373766 -141143271 + B1_Mur3 SINE Alu 2 149 0 5 648 234 229 0 0 chr6 8373767 8373837 -141143200 + GA-rich Low_complexity Low_complexity 1 70 0 5 648 433 333 118 36 chr6 8374839 8375203 -141141834 + L2 LINE L2 2420 2813 -606 5 648 526 300 127 23 chr6 8375255 8375562 -141141475 + L1ME3A LINE L1 5835 6173 0 5 648 231 380 84 56 chr6 8375649 8376078 -141140959 - L2b LINE L2 -1 3374 2934 5 648 202 268 91 27 chr6 8378879 8378997 -141138040 - MIR SINE MIR -18 190 71 5 648 549 244 185 25 chr6 8379086 8379274 -141137763 + Lx9 LINE L1 7319 7530 -114 5 648 252 0 0 0 chr6 8379274 8379302 -141137735 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 648 1107 68 0 0 chr6 8379302 8379435 -141137602 - B1_Mus2 SINE Alu -13 134 2 5 648 549 244 185 25 chr6 8379435 8379526 -141137511 + Lx9 LINE L1 7531 7643 -1 5 648 473 162 91 0 chr6 8381198 8381297 -141135740 + ORR1C1 LTR MaLR 1 108 -270 5 648 663 302 37 37 chr6 8381367 8381690 -141135347 - L1MC3 LINE L1 -470 7315 6993 5 648 1508 62 0 6 chr6 8383799 8383978 -141133059 + B2_Mm2 SINE B2 2 179 -16 5 648 222 37 0 0 chr6 8383979 8384006 -141133031 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 648 412 134 0 35 chr6 8384043 8384128 -141132909 + GA-rich Low_complexity Low_complexity 2 83 0 5 648 312 282 156 23 chr6 8384128 8384347 -141132690 + HAL1-3A_ME LINE L1 2285 2439 -419 5 648 275 96 93 27 chr6 8384348 8384423 -141132614 + GA-rich Low_complexity Low_complexity 1 80 0 5 648 486 279 87 68 chr6 8384888 8385249 -141131788 - MTEa LTR MaLR 0 379 1 5 648 247 0 79 0 chr6 8385851 8385889 -141131148 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 5 648 4232 108 1 24 chr6 8386197 8387115 -141129922 - L1Md_A LINE L1 -4362 1521 630 5 648 2205 99 51 6 chr6 8387166 8387480 -141129557 - Lx3A LINE L1 -1 6980 6653 5 649 1066 269 25 0 chr6 8389352 8389590 -141127447 + 7SK RNA RNA 1 244 -87 5 649 342 314 70 13 chr6 8389590 8389819 -141127218 + L1MB3 LINE L1 5727 5968 -215 5 649 25 51 0 0 chr6 8389924 8389963 -141127074 + AT_rich Low_complexity Low_complexity 1 39 0 5 649 1296 282 98 17 chr6 8390418 8390941 -141126096 + Lx8 LINE L1 6905 7469 -4 5 649 559 325 62 38 chr6 8391010 8391221 -141125816 - MER20 DNA MER1_type 0 219 4 5 649 1401 278 105 48 chr6 8391377 8391421 -141125616 - MT2A LTR ERVL 0 533 490 5 649 523 40 27 0 chr6 8391421 8391495 -141125542 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 5 649 1401 278 105 48 chr6 8391495 8391953 -141125084 - MT2A LTR ERVL -44 489 3 5 649 2736 145 67 56 chr6 8392421 8392977 -141124060 + RMER6A LTR ERVK 1 562 -194 5 649 1200 281 42 11 chr6 8394766 8395126 -141121911 - MTEa LTR MaLR -4 375 5 5 649 561 295 0 16 chr6 8396592 8396716 -141120321 - B1F2 SINE Alu -27 122 1 5 649 209 109 0 61 chr6 8397272 8397321 -141119716 + T-rich Low_complexity Low_complexity 2 47 0 5 649 780 264 129 22 chr6 8397488 8397720 -141119317 + B4 SINE B4 32 288 -4 5 649 2446 142 10 5 chr6 8398566 8398956 -141118081 + Lx4A LINE L1 6664 7055 -3 5 649 543 301 113 73 chr6 8399111 8399358 -141117679 + B4 SINE B4 5 261 -31 5 649 1383 89 10 10 chr6 8399929 8400122 -141116915 + B2_Mm2 SINE B2 1 193 -2 5 649 385 90 30 0 chr6 8400147 8400214 -141116823 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 649 23 0 0 0 chr6 8400367 8400390 -141116647 + AT_rich Low_complexity Low_complexity 1 23 0 5 649 590 230 189 24 chr6 8401820 8401989 -141115048 + B3 SINE B2 1 197 -19 5 649 828 0 0 0 chr6 8401992 8402084 -141114953 + (GAGAA)n Simple_repeat Simple_repeat 3 94 0 5 649 613 203 0 41 chr6 8402106 8402229 -141114808 + B1_Mus2 SINE Alu 1 118 -29 5 649 418 289 182 27 chr6 8402208 8402471 -141114566 - MTE2a LTR MaLR -75 304 1 5 649 271 284 53 0 chr6 8402775 8402870 -141114167 + L1M5 LINE L1 3342 3441 -2705 5 649 233 357 35 92 chr6 8403001 8403048 -141113989 + B4 SINE B4 2 48 -244 5 649 243 0 0 0 chr6 8403048 8403075 -141113962 + (TAA)n Simple_repeat Simple_repeat 1 27 0 5 649 256 311 60 65 chr6 8403075 8403200 -141113837 + B4A SINE B4 49 164 -128 5 649 211 300 17 160 chr6 8403178 8403297 -141113740 + RSINE1 SINE B4 64 165 0 5 649 305 296 128 73 chr6 8403427 8403715 -141113322 + HAL1b LINE L1 1166 1469 -540 5 649 2192 151 27 8 chr6 8403745 8404118 -141112919 - ORR1C2 LTR MaLR 0 384 5 5 649 198 143 0 0 chr6 8404736 8404771 -141112266 + (A)n Simple_repeat Simple_repeat 1 35 0 5 649 349 250 34 11 chr6 8405474 8405563 -141111474 - Tigger13a DNA MER2_type -221 550 460 5 649 908 297 62 46 chr6 8405912 8406285 -141110752 + MLT2B4 LTR ERVL 4 522 -40 5 649 261 250 64 9 chr6 8406333 8406442 -141110595 + L1MD3 LINE L1 7876 7990 -5 5 649 1186 242 47 96 chr6 8406811 8407195 -141109842 - MLT1A0 LTR MaLR 0 365 1 5 649 204 333 0 0 chr6 8407371 8407440 -141109597 + T-rich Low_complexity Low_complexity 5 73 0 5 649 314 343 49 87 chr6 8407819 8408004 -141109033 - MER5A DNA MER1_type -2 187 10 5 649 356 298 0 0 chr6 8408705 8408789 -141108248 + MER58A DNA MER1_type 13 96 -128 5 649 225 0 0 0 chr6 8408854 8408879 -141108158 + (A)n Simple_repeat Simple_repeat 1 25 0 5 649 1314 106 16 0 chr6 8409936 8410124 -141106913 + B2_Mm2 SINE B2 1 191 -4 5 649 288 243 37 18 chr6 8410327 8410436 -141106601 - L1MA4A LINE L1 -373 5930 5820 5 649 207 100 0 0 chr6 8410441 8410471 -141106566 + (TATG)n Simple_repeat Simple_repeat 3 32 0 5 649 339 327 62 29 chr6 8411073 8411281 -141105756 + MIRb SINE MIR 30 244 -24 5 649 522 301 24 25 chr6 8411534 8411717 -141105320 + ID_B1 SINE B4 48 223 -69 5 649 242 295 84 0 chr6 8411994 8412089 -141104948 - ORSL-2b DNA Tip100 0 508 406 6 649 394 254 41 52 chr6 8412965 8413108 -141103929 + B3A SINE B2 2 141 -75 6 649 28 29 0 0 chr6 8413182 8413217 -141103820 + AT_rich Low_complexity Low_complexity 1 35 0 6 649 528 56 0 0 chr6 8413945 8414017 -141103020 + (GTTTG)n Simple_repeat Simple_repeat 3 74 0 6 649 253 207 17 0 chr6 8414434 8414492 -141102545 - MIRc SINE MIR -90 178 120 6 649 3045 103 50 15 chr6 8414965 8415440 -141101597 + Lx2 LINE L1 6502 6993 -4 6 649 727 242 36 12 chr6 8416697 8416864 -141100173 + ID_B1 SINE B4 41 211 -13 6 649 21 36 0 0 chr6 8416878 8416906 -141100131 + AT_rich Low_complexity Low_complexity 1 28 0 6 649 24 0 0 0 chr6 8417007 8417031 -141100006 + AT_rich Low_complexity Low_complexity 1 24 0 6 649 483 167 136 10 chr6 8418786 8418889 -141098148 + B1_Mur1 SINE Alu 33 148 -1 6 649 195 379 15 0 chr6 8419410 8419476 -141097561 - L2c LINE L2 -222 3165 3099 6 649 243 103 0 0 chr6 8419480 8419519 -141097518 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 6 649 207 0 0 0 chr6 8420678 8420701 -141096336 + (T)n Simple_repeat Simple_repeat 1 23 0 6 649 270 0 0 0 chr6 8421252 8421282 -141095755 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 649 484 246 0 18 chr6 8421289 8421401 -141095636 - RSINE1 SINE B4 -49 116 7 6 649 210 37 0 0 chr6 8421670 8421697 -141095340 + (TAA)n Simple_repeat Simple_repeat 2 28 0 6 649 1199 274 22 16 chr6 8422053 8422417 -141094620 + Lx8 LINE L1 6963 7328 -145 6 649 247 342 80 40 chr6 8422614 8423065 -141093972 - L2c LINE L2 -64 3323 2674 6 649 268 300 275 27 chr6 8423072 8423269 -141093768 + MamRep38 DNA hAT 1 246 -49 6 649 644 325 91 30 chr6 8423458 8423953 -141093084 - L2c LINE L2 -993 2426 1902 6 649 361 301 79 24 chr6 8424123 8424249 -141092788 + MER58B DNA MER1_type 208 340 -1 6 649 372 94 0 0 chr6 8424307 8424360 -141092677 + (CATA)n Simple_repeat Simple_repeat 2 54 0 6 649 333 296 26 9 chr6 8424697 8424813 -141092224 - Tigger13a DNA MER2_type -489 282 165 6 649 227 316 39 13 chr6 8425347 8425424 -141091613 + ID4_ SINE ID 3 81 -2 6 649 678 330 20 10 chr6 8425361 8425563 -141091474 + ID_B1 SINE B4 21 224 0 6 649 499 262 194 67 chr6 8426131 8426496 -141090541 - MLT1G3 LTR MaLR -65 530 34 6 649 417 265 0 24 chr6 8426477 8426562 -141090475 - PB1D10 SINE Alu -13 104 22 6 649 782 311 125 34 chr6 8427521 8428172 -141088865 - L1MDa LINE L1 -5819 814 21 6 649 576 250 158 26 chr6 8428917 8429069 -141087968 + B4 SINE B4 117 288 -4 6 649 443 316 55 28 chr6 8429239 8429457 -141087580 + L1MEd LINE L1 462 685 -5451 6 649 364 315 109 35 chr6 8430342 8430572 -141086465 + L1MEd LINE L1 4513 4759 -1387 6 649 3581 189 111 21 chr6 8430658 8430764 -141086273 - Lx9 LINE L1 -7 7637 7480 6 649 401 0 20 0 chr6 8430764 8430813 -141086224 + (TATG)n Simple_repeat Simple_repeat 2 51 0 6 649 3581 189 111 21 chr6 8430813 8431592 -141085445 - Lx9 LINE L1 -165 7479 6674 6 649 239 317 130 27 chr6 8432296 8432442 -141084595 - LTR33A LTR ERVL -269 251 91 6 649 1202 68 0 0 chr6 8432643 8432790 -141084247 + B1_Mus2 SINE Alu 1 147 0 6 649 254 149 0 26 chr6 8432790 8432855 -141084182 + A-rich Low_complexity Low_complexity 14 76 0 6 649 300 236 111 28 chr6 8432939 8433083 -141083954 - L1MA9 LINE L1 -42 6270 6115 6 649 21 0 0 0 chr6 8433242 8433263 -141083774 + AT_rich Low_complexity Low_complexity 1 21 0 6 649 243 0 0 0 chr6 8433861 8433888 -141083149 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 649 373 272 34 68 chr6 8434050 8434196 -141082841 + B1F SINE Alu 1 141 -8 6 649 1247 20 7 0 chr6 8434356 8434502 -141082535 - B1_Mm SINE Alu 0 147 1 6 649 559 286 64 85 chr6 8434575 8434858 -141082179 - B4A SINE B4 -14 278 2 6 649 310 275 0 0 chr6 8439001 8439070 -141077967 + ID4_ SINE ID 1 69 -14 6 649 23 33 0 0 chr6 8439077 8439107 -141077930 + AT_rich Low_complexity Low_complexity 1 30 0 6 649 427 187 19 0 chr6 8440585 8440692 -141076345 + GA-rich Low_complexity Low_complexity 1 109 0 6 649 321 239 0 96 chr6 8441292 8441417 -141075620 - ID_B1 SINE B4 -14 210 98 6 649 391 186 111 13 chr6 8441316 8441423 -141075614 - PB1D10 SINE Alu -33 116 1 6 649 29 60 0 0 chr6 8441629 8441679 -141075358 + AT_rich Low_complexity Low_complexity 1 50 0 6 649 1654 270 93 35 chr6 8441698 8441816 -141075221 - Lx9 LINE L1 0 7644 7507 6 649 225 65 0 0 chr6 8441816 8441847 -141075190 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 649 1654 270 93 35 chr6 8441847 8442438 -141074599 - Lx9 LINE L1 -138 7506 6895 6 649 222 342 13 0 chr6 8442520 8442534 -141074503 + B4A SINE B4 74 88 -204 6 649 668 262 0 0 chr6 8442534 8442679 -141074358 + B1_Mur1 SINE Alu 4 148 -1 6 649 868 317 91 13 chr6 8442687 8442994 -141074043 - MTE2b LTR MaLR -44 335 5 6 649 24 67 0 0 chr6 8443112 8443157 -141073880 + AT_rich Low_complexity Low_complexity 1 45 0 6 649 180 0 0 0 chr6 8443226 8443246 -141073791 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 649 254 342 9 35 chr6 8443493 8443608 -141073429 - MIR SINE MIR -3 259 148 6 649 312 313 108 29 chr6 8443942 8444146 -141072891 - L1ME4a LINE L1 -70 6054 5835 6 649 279 0 0 0 chr6 8444697 8444728 -141072309 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 649 342 0 0 0 chr6 8444728 8444765 -141072272 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 649 917 235 10 0 chr6 8446819 8447015 -141070022 + B3 SINE B2 1 198 -18 6 649 255 31 0 0 chr6 8447017 8447049 -141069988 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 6 649 462 295 42 42 chr6 8447498 8447689 -141069348 + RMER15 LTR ERVL 371 561 -14 6 649 1874 226 112 37 chr6 8448159 8448775 -141068262 - RMER6C LTR ERVK 0 690 29 6 649 314 252 64 176 chr6 8448567 8448817 -141068220 - MT2B LTR ERVL -375 226 5 6 649 180 358 24 36 chr6 8448863 8448947 -141068090 - L2b LINE L2 -21 3354 3272 6 649 2818 135 156 61 chr6 8449267 8449890 -141067147 + RMER6C LTR ERVK 1 682 -8 6 649 308 359 128 17 chr6 8449955 8450306 -141066731 - L2b LINE L2 -1163 2256 1867 6 649 663 279 92 6 chr6 8450934 8450971 -141066066 - B3 SINE B2 -1 215 168 6 649 243 0 0 0 chr6 8450971 8450998 -141066039 + (TATG)n Simple_repeat Simple_repeat 4 30 0 6 649 663 279 92 6 chr6 8450998 8451133 -141065904 - B3 SINE B2 -49 167 28 6 649 186 133 0 0 chr6 8451143 8451173 -141065864 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 6 649 818 236 26 42 chr6 8451414 8451807 -141065230 - L1MA4 LINE L1 -281 6016 5625 6 649 411 152 0 0 chr6 8452310 8452389 -141064648 + GA-rich Low_complexity Low_complexity 1 79 0 6 649 189 314 161 0 chr6 8452398 8452535 -141064502 + L2 LINE L2 2406 2564 -855 6 649 622 214 129 31 chr6 8453284 8453477 -141063560 - B3 SINE B2 0 216 5 6 649 246 62 0 0 chr6 8454885 8454917 -141062120 + (TGG)n Simple_repeat Simple_repeat 1 32 0 6 649 241 141 47 174 chr6 8455001 8455087 -141061950 - MLT1B LTR MaLR -191 199 125 6 649 445 293 36 65 chr6 8455147 8455315 -141061722 - RSINE1 SINE B4 0 165 3 6 649 447 209 12 0 chr6 8455393 8455479 -141061558 - B3 SINE B2 -6 210 124 6 649 1006 106 182 0 chr6 8455481 8455651 -141061386 + RMER6A LTR ERVK 1 201 -555 6 649 1055 174 84 31 chr6 8455659 8455674 -141061363 + RMER6A LTR ERVK 487 500 -256 6 649 258 32 0 0 chr6 8455674 8455705 -141061332 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 6 649 1055 174 84 31 chr6 8455705 8455915 -141061122 + RMER6A LTR ERVK 501 724 -32 6 649 511 274 0 0 chr6 8455940 8456042 -141060995 - B3 SINE B2 -113 103 2 6 649 252 132 114 29 chr6 8456049 8456119 -141060918 - MLT1A1 LTR MaLR -325 83 8 6 649 279 130 0 0 chr6 8456405 8456459 -141060578 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 649 222 295 32 16 chr6 8456549 8456611 -141060426 + ID4 SINE ID 5 67 -16 6 649 279 194 29 101 chr6 8456640 8456709 -141060328 - RSINE1 SINE B4 -87 78 15 6 649 703 271 81 39 chr6 8457936 8458170 -141058867 + MIR SINE MIR 19 262 0 6 649 28 61 0 0 chr6 8458291 8458340 -141058697 + AT_rich Low_complexity Low_complexity 1 49 0 6 649 183 80 0 0 chr6 8459431 8459456 -141057581 + (CGG)n Simple_repeat Simple_repeat 2 26 0 6 649 25 0 0 0 chr6 8459624 8459649 -141057388 + GC_rich Low_complexity Low_complexity 1 25 0 6 649 240 86 0 0 chr6 8459842 8459877 -141057160 + (CCCG)n Simple_repeat Simple_repeat 4 38 0 6 649 22 80 0 0 chr6 8459953 8460003 -141057034 + GC_rich Low_complexity Low_complexity 1 50 0 6 649 240 35 0 0 chr6 8460105 8460134 -141056903 + (CCG)n Simple_repeat Simple_repeat 3 31 0 6 649 254 191 30 45 chr6 8461193 8461259 -141055778 - L1MD2 LINE L1 -6057 490 426 6 649 315 0 0 0 chr6 8462597 8462632 -141054405 + (CTG)n Simple_repeat Simple_repeat 3 37 0 6 649 265 304 41 52 chr6 8466661 8466758 -141050279 - PB1D7 SINE Alu -14 106 11 6 649 245 292 15 0 chr6 8466700 8466765 -141050272 - ID_B1 SINE B4 -79 145 80 6 649 28 71 0 0 chr6 8467301 8467357 -141049680 + AT_rich Low_complexity Low_complexity 1 56 0 6 649 2405 167 21 38 chr6 8467803 8468277 -141048760 - RLTR16 LTR ERVK -2 503 38 6 649 4542 4 0 0 chr6 8468279 8468819 -141048218 + L1Md_A LINE L1 6083 6582 0 6 649 298 116 0 0 chr6 8468822 8468865 -141048172 - RLTR16 LTR ERVK -457 48 6 6 649 461 270 106 9 chr6 8469712 8469929 -141047108 - Lx9 LINE L1 -48 7596 7359 6 649 208 28 0 77 chr6 8470794 8470833 -141046204 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 6 649 736 196 195 6 chr6 8471361 8471535 -141045502 - B3 SINE B2 -7 209 3 6 649 343 287 59 0 chr6 8471638 8471739 -141045298 + PB1D10 SINE Alu 1 107 -10 6 649 748 280 18 0 chr6 8471757 8471925 -141045112 + B3A SINE B2 1 171 -27 6 649 471 18 0 0 chr6 8471932 8471988 -141045049 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 649 219 238 0 0 chr6 8472437 8472479 -141044558 + (ATGGTG)n Simple_repeat Simple_repeat 5 46 0 7 649 525 305 60 0 chr6 8473503 8473654 -141043383 + RSINE1 SINE B4 2 161 -4 7 649 225 0 0 0 chr6 8474143 8474168 -141042869 + (T)n Simple_repeat Simple_repeat 1 25 0 7 649 374 362 73 6 chr6 8474289 8474453 -141042584 + MLT1J2 LTR MaLR 187 361 -87 7 649 1154 51 0 0 chr6 8475485 8475623 -141041414 + B1_Mus2 SINE Alu 1 138 -9 7 649 206 32 32 0 chr6 8475645 8475676 -141041361 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7 649 1896 5 0 0 chr6 8475835 8476050 -141040987 + L1Md_T LINE L1 6368 6582 0 7 649 869 79 0 0 chr6 8476832 8476946 -141040091 + B2_Mm2 SINE B2 2 115 -80 7 649 1077 293 43 69 chr6 8477110 8477619 -141039418 - Lx8 LINE L1 -2 7471 6976 7 649 302 328 100 15 chr6 8478136 8478266 -141038771 + MLT1A1 LTR MaLR 268 408 0 7 649 507 222 197 0 chr6 8478455 8478572 -141038465 - B1_Mur2 SINE Alu -8 141 2 7 649 38 39 0 0 chr6 8478653 8478705 -141038332 + AT_rich Low_complexity Low_complexity 1 52 0 7 649 1197 74 0 0 chr6 8479254 8479402 -141037635 - B1_Mus1 SINE Alu 0 148 1 7 649 7582 36 2 1 chr6 8479420 8480857 -141036180 - L1Md_F2 LINE L1 -2 6580 5141 7 649 2464 277 97 48 chr6 8480888 8481915 -141035122 - Lx8 LINE L1 -50 7423 6334 7 649 500 45 15 0 chr6 8481915 8481982 -141035055 + (CATA)n Simple_repeat Simple_repeat 4 71 0 7 649 2464 277 97 48 chr6 8481982 8482125 -141034912 - Lx8 LINE L1 -1140 6333 6196 7 649 6492 47 20 2 chr6 8482389 8483201 -141033836 - L1Md_F2 LINE L1 -12 6570 5745 7 649 388 247 11 11 chr6 8483377 8483467 -141033570 - PB1D10 SINE Alu -7 110 21 7 649 235 259 19 0 chr6 8483500 8483554 -141033483 - RSINE1 SINE B4 -2 163 109 7 649 201 132 0 0 chr6 8484272 8484310 -141032727 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 7 649 233 217 0 48 chr6 8484766 8484829 -141032208 + (CATA)n Simple_repeat Simple_repeat 3 62 0 7 649 22 35 0 0 chr6 8485624 8485653 -141031384 + AT_rich Low_complexity Low_complexity 1 29 0 7 649 3316 31 13 5 chr6 8485725 8486118 -141030919 + MTA_Mm LTR MaLR 1 396 0 7 649 1167 35 21 0 chr6 8486118 8486262 -141030775 + B1_Mm SINE Alu 1 147 0 7 649 312 286 61 26 chr6 8487588 8487703 -141029334 + Charlie4z DNA MER1_type 24 142 -25 7 649 35917 40 8 7 chr6 8488242 8494483 -141022554 - L1Md_T LINE L1 0 6585 253 7 649 216 97 0 0 chr6 8494626 8494657 -141022380 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 7 649 3525 113 23 2 chr6 8494658 8495188 -141021849 - Lx LINE L1 -8 6646 6106 7 649 220 277 285 0 chr6 8496105 8496235 -141020802 - MIRb SINE MIR -7 261 95 7 649 331 302 57 0 chr6 8496841 8496947 -141020090 - MER115 DNA Tip100 -104 589 478 7 649 21 0 0 0 chr6 8497366 8497387 -141019650 + AT_rich Low_complexity Low_complexity 1 21 0 7 649 1169 82 0 0 chr6 8497392 8497539 -141019498 + B1_Mus2 SINE Alu 1 147 0 7 649 233 351 43 43 chr6 8497567 8497683 -141019354 - MIR SINE MIR -73 135 20 7 649 685 181 6 0 chr6 8498045 8498089 -141018948 + B1_Mus1 SINE Alu 17 140 -9 7 649 279 237 0 95 chr6 8498089 8498162 -141018875 + ID_B1 SINE B4 146 215 -9 7 649 183 42 0 0 chr6 8498162 8498186 -141018851 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 649 232 205 45 67 chr6 8498369 8498458 -141018579 - L1MA8 LINE L1 0 6291 6205 7 649 31 44 0 0 chr6 8498886 8498931 -141018106 + AT_rich Low_complexity Low_complexity 1 45 0 7 649 525 58 0 0 chr6 8499484 8499553 -141017484 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 649 327 350 18 22 chr6 8499692 8499805 -141017232 + B1F1 SINE Alu 11 117 0 7 649 934 241 18 23 chr6 8500073 8500290 -141016747 + B3 SINE B2 1 216 0 1 649 340 86 34 17 chr6 8500323 8500382 -141016655 - U2 snRNA snRNA -128 60 1 2 649 249 33 0 0 chr6 8500456 8500486 -141016551 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 649 857 113 35 14 chr6 8503002 8503145 -141013892 + B1_Mur4 SINE Alu 3 148 -2 4 649 232 125 35 35 chr6 8503146 8503204 -141013833 + A-rich Low_complexity Low_complexity 5 62 0 5 649 458 230 71 18 chr6 8503728 8503896 -141013141 - L1M2 LINE L1 -835 5308 5132 6 649 1069 267 50 18 chr6 8503954 8504232 -141012805 - B4 SINE B4 0 292 6 7 649 663 231 89 0 chr6 8504263 8504466 -141012571 - L1M2 LINE L1 -1024 5119 4899 6 649 1089 263 127 47 chr6 8504475 8505043 -141011994 + L1MA4A LINE L1 5304 5925 -378 8 649 572 251 44 94 chr6 8505579 8505610 -141011427 - B3 SINE B2 -9 207 174 9 649 444 19 0 0 chr6 8505610 8505663 -141011374 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 649 572 251 44 94 chr6 8505663 8505811 -141011226 - B3 SINE B2 -43 173 37 9 649 768 159 7 21 chr6 8508066 8508207 -141008830 + B1_Mus1 SINE Alu 3 141 -7 1 649 1773 187 82 17 chr6 8509323 8509702 -141007335 - MTD LTR MaLR -14 405 15 1 649 351 247 226 61 chr6 8509841 8510022 -141007015 - B3 SINE B2 -5 211 1 1 649 306 106 0 0 chr6 8510643 8510690 -141006347 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 649 324 0 0 0 chr6 8510698 8510734 -141006303 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 649 712 312 60 51 chr6 8511116 8511447 -141005590 - MTD LTR MaLR -85 334 1 1 649 8198 50 1 0 chr6 8511946 8513526 -141003511 - L1Md_F2 LINE L1 0 6582 5000 1 649 1114 100 29 0 chr6 8513509 8513679 -141003358 + L1_Mm LINE L1 3705 3879 -2004 1 649 2326 67 0 0 chr6 8513681 8513979 -141003058 + L1_Mm LINE L1 4737 5034 -849 1 649 389 285 52 115 chr6 8514021 8514386 -141002651 - ORR1E LTR MaLR -5 374 20 1 649 1176 61 0 13 chr6 8514499 8514648 -141002389 + B1_Mm SINE Alu 1 147 0 2 649 264 225 366 65 chr6 8515368 8515521 -141001516 - L1M LINE L1 -623 5550 5353 2 649 497 357 0 0 chr6 8515663 8515792 -141001245 - RSINE1 SINE B4 0 165 37 2 649 378 0 0 0 chr6 8516997 8517039 -140999998 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 81 10025 85 1 2 chr6 8518398 8520499 -140996538 - L1_Mus1 LINE L1 -2 6565 4468 2 650 9251 104 14 3 chr6 8520501 8521927 -140995110 - L1_Mus1 LINE L1 -3174 2709 1268 2 650 806 265 15 5 chr6 8522066 8522271 -140994766 - B3 SINE B2 -9 207 1 2 650 24 0 0 0 chr6 8522547 8522571 -140994466 + AT_rich Low_complexity Low_complexity 1 24 0 2 650 436 263 79 20 chr6 8522740 8522841 -140994196 + PB1D9 SINE Alu 10 116 -4 2 650 22 0 0 0 chr6 8523082 8523104 -140993933 + AT_rich Low_complexity Low_complexity 1 22 0 2 650 339 260 111 30 chr6 8523462 8523597 -140993440 - Lx5 LINE L1 0 7050 6905 2 650 347 359 29 48 chr6 8523934 8524142 -140992895 + L1MD LINE L1 3786 3989 -2157 3 650 299 318 64 20 chr6 8524500 8524702 -140992335 + L1ME1 LINE L1 5742 5952 -227 3 650 2608 93 61 0 chr6 8525445 8525820 -140991217 - L1_Mus4 LINE L1 -165 6471 6074 3 650 435 68 0 0 chr6 8525845 8525904 -140991133 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 650 7103 111 14 24 chr6 8526435 8527508 -140989529 - Lx LINE L1 -6 6648 5587 3 650 4839 97 75 21 chr6 8527527 8528916 -140988121 - L1VL2 LINE L1 -2050 1565 97 3 650 240 245 41 0 chr6 8529451 8529500 -140987537 - ID4 SINE ID -29 54 4 3 650 868 290 188 15 chr6 8529873 8530081 -140986956 - L1MB8 LINE L1 -197 5981 5690 3 650 1236 34 0 0 chr6 8530081 8530228 -140986809 - B1_Mm SINE Alu 0 147 1 3 650 868 280 146 32 chr6 8530228 8530767 -140986270 - L1MB8 LINE L1 -489 5689 5124 3 650 1854 186 101 19 chr6 8530834 8531211 -140985826 - MTC LTR MaLR -13 408 1 3 650 510 385 42 9 chr6 8533192 8533407 -140983630 - B4A SINE B4 -2 290 69 4 650 588 246 46 0 chr6 8533417 8533547 -140983490 + Lx5 LINE L1 6479 6614 -436 4 650 879 281 15 67 chr6 8533560 8533888 -140983149 + Lx6 LINE L1 7111 7421 -39 4 650 317 243 53 13 chr6 8534095 8534170 -140982867 - B4A SINE B4 -46 246 169 4 650 211 324 53 26 chr6 8534262 8534376 -140982661 + B1F SINE Alu 4 120 -29 4 650 200 435 82 0 chr6 8534735 8534820 -140982217 - L2b LINE L2 -28 3347 3256 4 650 201 136 0 43 chr6 8535434 8535480 -140981557 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 4 650 555 125 0 0 chr6 8536333 8536413 -140980624 - B1_Mus2 SINE Alu -67 80 1 4 650 324 262 0 77 chr6 8536413 8536424 -140980613 - MT2B LTR ERVL -364 237 154 4 650 1407 169 57 13 chr6 8536676 8536975 -140980062 - RMER1A Other Other -22 1008 697 4 650 25 0 0 0 chr6 8537964 8537989 -140979048 + AT_rich Low_complexity Low_complexity 1 25 0 5 650 748 278 6 11 chr6 8538252 8538430 -140978607 + B4 SINE B4 1 177 -115 5 650 207 0 0 0 chr6 8538516 8538539 -140978498 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 650 339 241 25 0 chr6 8539066 8539145 -140977892 + ID4 SINE ID 2 82 -1 5 650 31 58 0 0 chr6 8539669 8539721 -140977316 + AT_rich Low_complexity Low_complexity 1 52 0 5 650 247 212 45 0 chr6 8541909 8541975 -140975062 + CT-rich Low_complexity Low_complexity 5 73 0 5 650 198 103 0 0 chr6 8544071 8544100 -140972937 + (A)n Simple_repeat Simple_repeat 1 29 0 5 650 311 337 65 34 chr6 8549290 8549548 -140967489 + MLT1F1 LTR MaLR 63 317 -231 5 650 366 318 19 0 chr6 8549562 8549669 -140967368 + MLT1F1 LTR MaLR 420 528 -41 5 650 262 335 39 66 chr6 8549813 8549995 -140967042 - MTEa LTR MaLR -4 355 179 5 650 645 253 101 18 chr6 8550071 8550240 -140966797 - MTEa LTR MaLR -196 183 1 5 650 3821 282 101 17 chr6 8550242 8551698 -140965339 - MTEa-int LTR MaLR -2 1578 1 5 650 478 279 177 0 chr6 8551842 8552000 -140965037 - MTEa LTR MaLR -193 186 1 5 650 329 327 9 9 chr6 8552270 8552381 -140964656 - PB1D10 SINE Alu -2 115 5 6 650 16306 63 14 2 chr6 8553555 8556359 -140960678 - L1Md_F2 LINE L1 -12 6570 3744 6 650 2926 54 56 5 chr6 8556909 8557300 -140959737 + IAPLTR2a LTR ERVK 1 411 0 6 650 1008 132 25 85 chr6 8557301 8557500 -140959537 + IAPEz-int LTR ERVK 9 195 -6286 6 650 269 283 0 0 chr6 8557500 8557553 -140959484 + RLTR27 LTR ERVK 223 275 -34 6 650 6734 66 57 45 chr6 8557553 8558620 -140958417 + IAPEz-int LTR ERVK 168 1172 -5309 6 650 3044 18 0 0 chr6 8558620 8558957 -140958080 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 650 57359 20 11 6 chr6 8558957 8565397 -140951640 - IAPEz-int LTR ERVK 0 6481 7 6 650 3023 18 0 0 chr6 8565398 8565733 -140951304 - IAPLTR1a_Mm LTR ERVK -2 335 1 6 650 4417 54 0 2 chr6 8565733 8566268 -140950769 + IAPEz-int LTR ERVK 1167 1700 -4781 6 650 6352 72 11 17 chr6 8566263 8567097 -140949940 + IAPEz-int LTR ERVK 5653 6481 0 6 650 1317 26 186 0 chr6 8567103 8567296 -140949741 + IAPLTR2a LTR ERVK 183 411 0 6 650 213 96 96 0 chr6 8567302 8567354 -140949683 + (CAGTG)n Simple_repeat Simple_repeat 1 57 0 6 650 486 298 133 43 chr6 8567678 8567987 -140949050 - MLT1A0 LTR MaLR 0 374 1 6 650 399 253 128 14 chr6 8567996 8568144 -140948893 + ID_B1 SINE B4 60 224 0 6 650 998 270 164 53 chr6 8568173 8568819 -140948218 + L1MB7 LINE L1 5410 6127 -57 6 650 2274 135 2 96 chr6 8568847 8569168 -140947869 - ORR1C1 LTR MaLR 0 378 83 7 650 900 203 117 19 chr6 8569168 8569374 -140947663 + URR1A DNA MER1_type 1 226 0 7 650 2274 135 2 96 chr6 8569374 8569469 -140947568 - ORR1C1 LTR MaLR -296 82 1 7 650 1585 246 105 52 chr6 8570881 8571463 -140945574 - RLTR18 LTR ERVK 0 616 4 7 650 1351 272 56 9 chr6 8571505 8571846 -140945191 - ORR1E LTR MaLR 0 359 3 7 650 23 33 0 0 chr6 8572272 8572302 -140944735 + AT_rich Low_complexity Low_complexity 1 30 0 7 650 523 350 136 21 chr6 8572306 8572724 -140944313 - Lx8 LINE L1 -9 7464 6999 7 650 520 256 187 46 chr6 8572736 8572977 -140944060 - Lx8 LINE L1 -767 6706 6432 7 650 252 0 0 0 chr6 8573672 8573700 -140943337 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 7 650 331 337 160 5 chr6 8574035 8574235 -140942802 - L1ME1 LINE L1 -13 6165 5935 7 650 545 296 125 38 chr6 8574280 8574729 -140942308 - L1MD3 LINE L1 -5 7990 7503 7 650 1009 269 11 68 chr6 8574765 8575120 -140941917 - L1ME1 LINE L1 -341 5838 5504 7 650 393 22 0 0 chr6 8575321 8575367 -140941670 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 650 330 132 0 0 chr6 8575367 8575420 -140941617 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 650 663 273 50 5 chr6 8575431 8575630 -140941407 - ID_B1 SINE B4 -13 211 4 8 650 1049 58 80 0 chr6 8576089 8576226 -140940811 + B1_Mus1 SINE Alu 1 148 0 8 650 531 67 0 0 chr6 8576254 8576329 -140940708 - L1Md_F2 LINE L1 -8 6574 6500 8 650 197 184 41 0 chr6 8576434 8576483 -140940554 + MIRc SINE MIR 18 68 -200 8 650 296 228 216 20 chr6 8576869 8577017 -140940020 + MLT1K LTR MaLR 339 515 -80 8 650 587 241 0 0 chr6 8577071 8577187 -140939850 - ID_B1 SINE B4 -10 214 99 8 650 547 13 26 13 chr6 8577939 8578015 -140939022 + (CAAAC)n Simple_repeat Simple_repeat 3 79 0 8 650 282 19 55 55 chr6 8581236 8581291 -140935746 + (TTCCC)n Simple_repeat Simple_repeat 3 57 0 8 650 231 341 46 62 chr6 8583641 8583835 -140933202 + L2c LINE L2 3192 3382 -5 8 650 386 258 11 0 chr6 8584155 8584248 -140932789 + L1ME1 LINE L1 6083 6176 -3 9 650 9227 3 0 0 chr6 8584802 8586335 -140930702 - L1Md_A LINE L1 0 6582 5050 9 650 684 225 59 83 chr6 8586647 8586851 -140930186 - B3A SINE B2 -14 202 4 9 650 258 105 0 0 chr6 8587910 8587948 -140929089 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 650 256 310 114 45 chr6 8588291 8588423 -140928614 - L2b LINE L2 -6 3369 3229 9 650 653 273 0 7 chr6 8588654 8588798 -140928239 + B1F SINE Alu 7 149 0 9 650 1542 220 93 11 chr6 8589666 8590042 -140926995 + MTD LTR MaLR 1 407 -12 9 650 450 0 0 0 chr6 8590169 8590219 -140926818 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 9 650 358 122 308 25 chr6 8590235 8590352 -140926685 - B2_Mm2 SINE B2 0 195 46 9 650 1307 90 11 0 chr6 8590374 8590551 -140926486 - B2_Mm1t SINE B2 -14 179 1 9 650 376 256 114 60 chr6 8590921 8591087 -140925950 + MIR SINE MIR 67 241 -21 1 650 251 351 26 39 chr6 8592244 8592408 -140924629 + L2a LINE L2 3243 3370 -56 1 650 279 0 0 0 chr6 8593461 8593492 -140923545 + (TGGGGG)n Simple_repeat Simple_repeat 4 34 0 1 650 242 213 26 13 chr6 8593804 8593880 -140923157 + (TAA)n Simple_repeat Simple_repeat 1 77 0 1 650 473 198 0 144 chr6 8594300 8594453 -140922584 + MT2B LTR ERVL 134 264 -337 1 650 1106 45 0 0 chr6 8594354 8594488 -140922549 + B1_Mus2 SINE Alu 14 147 0 1 650 252 130 0 0 chr6 8594488 8594534 -140922503 + (A)n Simple_repeat Simple_repeat 1 46 0 1 650 348 253 0 0 chr6 8596572 8596738 -140920299 + CT-rich Low_complexity Low_complexity 1 166 0 1 650 284 314 113 28 chr6 8598135 8598276 -140918761 - MIR3 SINE MIR -35 173 21 1 650 237 319 73 21 chr6 8599330 8599426 -140917611 - PB1D7 SINE Alu -1 119 19 1 650 233 258 29 29 chr6 8599395 8599463 -140917574 - ID_B1 SINE B4 -92 132 65 1 650 1147 70 0 7 chr6 8601034 8601172 -140915865 + B1_Mus1 SINE Alu 2 139 -9 1 650 657 0 0 0 chr6 8601172 8601245 -140915792 + (CAAAC)n Simple_repeat Simple_repeat 2 74 0 1 650 367 216 73 83 chr6 8601830 8601926 -140915111 + MTEa LTR MaLR 4 98 -281 1 650 228 321 68 91 chr6 8602786 8602918 -140914119 - MIRb SINE MIR -81 187 50 1 650 1845 99 18 7 chr6 8603170 8603455 -140913582 + Lx LINE L1 6367 6654 0 1 650 812 303 40 26 chr6 8604088 8604437 -140912600 + L1MC1 LINE L1 5944 6297 -36 1 650 318 183 0 0 chr6 8605416 8605487 -140911550 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 650 291 284 0 89 chr6 8605495 8605607 -140911430 - ID_B1 SINE B4 -53 171 70 1 650 369 0 0 0 chr6 8606507 8606548 -140910489 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 650 225 94 0 0 chr6 8608344 8608376 -140908661 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 1 650 477 50 0 0 chr6 8608815 8608875 -140908162 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 650 330 266 129 7 chr6 8609308 8609448 -140907589 + MER117 DNA MER1_type 2 158 -39 1 650 630 0 0 0 chr6 8609594 8609664 -140907373 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 650 643 245 36 7 chr6 8610142 8610282 -140906755 - RSINE1 SINE B4 -8 157 14 1 650 1023 159 0 31 chr6 8610366 8610560 -140906477 - B2_Mm2 SINE B2 -7 188 1 1 650 24 32 0 0 chr6 8610571 8610602 -140906435 + AT_rich Low_complexity Low_complexity 1 31 0 1 650 252 0 0 0 chr6 8611188 8611216 -140905821 + (CATA)n Simple_repeat Simple_repeat 3 30 0 1 650 221 182 0 18 chr6 8611247 8611303 -140905734 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 650 326 244 19 26 chr6 8612169 8612294 -140904743 - L1MB8 LINE L1 -8 6176 6051 1 650 996 151 0 141 chr6 8613959 8614214 -140902823 + URR1B DNA MER1_type 7 225 0 1 650 226 228 65 48 chr6 8614761 8614870 -140902167 + MIRm SINE MIR 96 199 -69 1 650 231 235 0 0 chr6 8615304 8615355 -140901682 + A-rich Low_complexity Low_complexity 1 51 0 1 650 281 275 50 0 chr6 8616829 8616909 -140900128 + B1_Mur3 SINE Alu 6 89 -60 1 650 1185 36 0 0 chr6 8616914 8617051 -140899986 + B1_Mm SINE Alu 1 137 -10 1 650 185 0 40 0 chr6 8617051 8617076 -140899961 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 650 280 264 55 14 chr6 8620391 8620464 -140896573 + ID4_ SINE ID 6 81 -2 1 650 3417 35 5 0 chr6 8620935 8621329 -140895708 + MTA_Mm LTR MaLR 1 396 0 1 650 635 198 32 0 chr6 8621535 8621661 -140895376 - B1_Mur1 SINE Alu -12 137 8 1 650 315 336 71 0 chr6 8621564 8621677 -140895360 - B4 SINE B4 -95 197 77 1 650 312 322 43 71 chr6 8622772 8622956 -140894081 - L1MD3 LINE L1 -71 7924 7746 1 650 821 275 9 5 chr6 8623157 8623369 -140893668 + ID_B1 SINE B4 2 214 -10 1 650 180 0 0 0 chr6 8623370 8623390 -140893647 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 650 465 270 0 0 chr6 8623813 8623913 -140893124 + RSINE1 SINE B4 3 102 -63 1 650 261 241 74 25 chr6 8624921 8625002 -140892035 + MLT1H2 LTR MaLR 63 147 -342 1 650 423 0 0 0 chr6 8626464 8626511 -140890526 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 650 1524 256 69 56 chr6 8627240 8627778 -140889259 - MTE2b-int LTR MaLR -490 1090 546 1 650 941 249 142 6 chr6 8627828 8628151 -140888886 - MTE2b-int LTR MaLR -1211 369 3 1 650 1086 279 34 47 chr6 8628152 8628536 -140888501 - MTE2b LTR MaLR 0 379 1 1 650 347 271 169 21 chr6 8628760 8628996 -140888041 + B4A SINE B4 9 286 -6 1 650 342 0 0 0 chr6 8629107 8629145 -140887892 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 650 1113 286 61 20 chr6 8629386 8630095 -140886942 - L1M4 LINE L1 -719 5461 4722 1 650 470 319 7 21 chr6 8630268 8630412 -140886625 + RSINE1 SINE B4 21 162 -3 1 650 596 200 39 23 chr6 8630451 8630579 -140886458 + B1F2 SINE Alu 1 130 -19 1 650 410 288 39 16 chr6 8630579 8630706 -140886331 - B3 SINE B2 -82 134 5 1 650 257 250 12 12 chr6 8630760 8630841 -140886196 - L1MD LINE L1 -1811 4335 4255 1 650 298 325 78 5 chr6 8631362 8631554 -140885483 - L1M4 LINE L1 -2169 3977 3772 1 650 638 168 37 43 chr6 8631586 8631758 -140885279 - L1MB8 LINE L1 0 6178 6018 1 650 346 82 16 16 chr6 8631758 8631809 -140885228 + (TTTC)n Simple_repeat Simple_repeat 1 51 0 1 650 1021 108 18 0 chr6 8631829 8631995 -140885042 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 1 650 382 211 40 0 chr6 8632000 8632076 -140884961 - PB1D7 SINE Alu -13 107 29 1 650 271 307 117 20 chr6 8632507 8632927 -140884110 - L1M4 LINE L1 -2942 3204 2752 1 650 438 20 0 0 chr6 8633131 8633182 -140883855 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 650 338 301 189 8 chr6 8633857 8634095 -140882942 + L1MC4 LINE L1 6698 6978 -1064 1 650 1122 30 0 0 chr6 8634250 8634384 -140882653 + (GGAGA)n Simple_repeat Simple_repeat 3 136 0 1 650 254 338 65 22 chr6 8634858 8634997 -140882040 - L2a LINE L2 -281 3145 3001 1 650 450 114 0 0 chr6 8635166 8635236 -140881801 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 650 411 294 126 47 chr6 8635266 8635480 -140881557 - B4 SINE B4 -30 262 32 1 650 535 278 7 29 chr6 8635514 8635651 -140881386 + RSINE1 SINE B4 2 135 -30 1 650 192 357 0 23 chr6 8636891 8636977 -140880060 - MIRm SINE MIR -140 136 53 1 650 440 18 0 17 chr6 8637563 8637621 -140879416 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 650 256 304 12 12 chr6 8637625 8637705 -140879332 - RSINE1 SINE B4 -29 136 57 1 650 203 244 0 0 chr6 8638834 8638875 -140878162 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 650 254 283 19 83 chr6 8639431 8639539 -140877498 - L1ME3 LINE L1 -49 6113 6013 1 650 193 380 80 0 chr6 8639670 8639783 -140877254 + MIRc SINE MIR 4 125 -143 1 650 681 264 34 6 chr6 8640922 8641101 -140875936 + B3A SINE B2 2 185 -13 1 650 264 208 78 13 chr6 8641683 8641746 -140875291 - B1F SINE Alu -6 143 66 1 650 679 155 90 8 chr6 8641746 8641980 -140875057 + RMER17C LTR ERVK 1 253 -157 1 650 488 239 19 50 chr6 8642002 8642144 -140874893 + RMER17C LTR ERVK 84 221 -189 1 650 548 53 13 0 chr6 8642144 8642220 -140874817 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 650 488 239 19 50 chr6 8642220 8642337 -140874700 + RMER17C LTR ERVK 222 340 -70 1 650 2892 110 74 74 chr6 8642337 8642894 -140874143 + RLTR31B_Mm LTR ERVK 1 557 0 1 650 488 239 19 50 chr6 8642894 8642955 -140874082 + RMER17C LTR ERVK 341 395 -15 1 650 338 244 12 24 chr6 8642911 8642995 -140874042 - PB1D7 SINE Alu -35 85 3 1 650 253 346 57 19 chr6 8643350 8643509 -140873528 + L2b LINE L2 3210 3374 -1 1 650 209 348 69 9 chr6 8643583 8643699 -140873338 - MIR3 SINE MIR -38 170 48 1 650 237 245 0 0 chr6 8643758 8643811 -140873226 - Tigger16b DNA TcMar -8 264 212 1 650 388 205 0 0 chr6 8643850 8643933 -140873104 - Tigger16b DNA Tigger -101 236 154 1 650 318 290 194 17 chr6 8645866 8646154 -140870883 + L1M2 LINE L1 4057 4395 -1748 1 650 2908 37 42 6 chr6 8646154 8646508 -140870529 + IAPLTR1_Mm LTR ERVK 1 367 0 1 81 56185 22 20 6 chr6 8646508 8652894 -140864143 + IAPEz-int LTR ERVK 8 6481 0 1 651 2921 34 42 6 chr6 8652894 8653248 -140863789 + IAPLTR1_Mm LTR ERVK 1 367 0 1 651 727 317 17 88 chr6 8653267 8653689 -140863348 + L1_Mur3 LINE L1 4371 4762 -1118 1 651 461 294 75 83 chr6 8653695 8654057 -140862980 + ORR1E LTR MaLR 3 379 0 1 651 528 239 83 30 chr6 8654086 8654254 -140862783 + MTE-int LTR MaLR 60 236 -1344 1 651 516 277 180 20 chr6 8654268 8654656 -140862381 + L1M2 LINE L1 4820 5263 -617 1 651 913 172 22 0 chr6 8654772 8654952 -140862085 + ORR1D1 LTR MaLR 1 184 -190 1 651 295 207 32 32 chr6 8654954 8655079 -140861958 + CT-rich Low_complexity Low_complexity 4 128 0 1 651 860 204 83 15 chr6 8655083 8655287 -140861750 + ORR1D1 LTR MaLR 157 374 0 1 651 524 286 112 27 chr6 8655437 8655696 -140861341 - L1MC4 LINE L1 -180 7862 7582 1 651 386 312 109 20 chr6 8655773 8655920 -140861117 - RSINE1 SINE B4 0 165 6 1 651 885 190 80 221 chr6 8656041 8656133 -140860904 + ORR1C1 LTR MaLR 2 89 -289 1 651 964 181 31 16 chr6 8656133 8656324 -140860713 + B2_Mm2 SINE B2 1 194 -1 1 651 885 190 80 221 chr6 8656324 8656670 -140860367 + ORR1C1 LTR MaLR 90 378 0 1 651 376 288 103 85 chr6 8656772 8657170 -140859867 - L1MC4 LINE L1 -1024 7018 6614 1 651 205 200 0 0 chr6 8657171 8657211 -140859826 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 651 225 257 70 14 chr6 8657298 8657369 -140859668 - L1MC4 LINE L1 -1594 6448 6374 1 651 255 228 17 17 chr6 8657839 8657897 -140859140 + L1MC4 LINE L1 6914 6971 -1071 1 651 438 94 0 0 chr6 8657984 8658048 -140858989 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 651 310 281 162 19 chr6 8658663 8658946 -140858091 + L1MC1 LINE L1 5269 5601 -2441 1 651 685 257 43 14 chr6 8658954 8659163 -140857874 + B3 SINE B2 1 215 -1 1 651 705 208 134 6 chr6 8659173 8659352 -140857685 + L1MC1 LINE L1 5610 5811 -533 1 651 240 284 13 13 chr6 8659365 8659440 -140857597 - MTEb LTR MaLR -18 361 287 1 651 325 235 123 0 chr6 8659627 8659708 -140857329 - Lx8 LINE L1 -216 7257 7167 1 651 398 284 54 99 chr6 8659714 8660027 -140857010 + L1MC1 LINE L1 6020 6318 -15 1 651 1309 88 0 47 chr6 8660645 8660804 -140856233 + B2_Mm2 SINE B2 5 161 -34 1 651 288 0 0 0 chr6 8660804 8660836 -140856201 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 1 651 1309 88 0 47 chr6 8660836 8660866 -140856171 + B2_Mm2 SINE B2 162 185 -10 1 651 225 175 25 0 chr6 8660971 8661011 -140856026 + C-rich Low_complexity Low_complexity 3 43 0 2 651 249 261 200 14 chr6 8662529 8662669 -140854368 + L2b LINE L2 3258 3423 -3 2 651 612 0 0 0 chr6 8663700 8663768 -140853269 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 651 211 267 33 22 chr6 8664165 8664257 -140852780 + CT-rich Low_complexity Low_complexity 2 94 0 2 651 200 386 0 19 chr6 8665478 8665581 -140851456 + GA-rich Low_complexity Low_complexity 2 102 0 2 651 396 0 0 0 chr6 8667744 8667788 -140849249 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 651 180 143 0 0 chr6 8667941 8667983 -140849054 + (A)n Simple_repeat Simple_repeat 1 42 0 2 651 202 237 182 13 chr6 8669585 8669662 -140847375 + MIRb SINE MIR 20 109 -159 2 651 615 286 50 53 chr6 8671017 8671298 -140845739 + B4A SINE B4 1 280 -12 2 651 486 88 0 0 chr6 8671337 8671405 -140845632 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 651 533 259 26 115 chr6 8672521 8672826 -140844211 - Lx7 LINE L1 -1440 6256 5979 2 651 4879 219 44 30 chr6 8672824 8674221 -140842816 + Lx7 LINE L1 6244 7696 0 2 651 441 0 0 0 chr6 8676469 8676518 -140840519 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 651 290 319 48 20 chr6 8678353 8678500 -140838537 + MIR SINE MIR 79 229 -33 2 651 480 48 0 0 chr6 8678522 8678585 -140838452 + (TAG)n Simple_repeat Simple_repeat 3 65 0 2 651 372 125 62 0 chr6 8678693 8678789 -140838248 + CT-rich Low_complexity Low_complexity 1 102 0 2 651 1600 102 0 9 chr6 8678789 8679016 -140838021 - LSU-rRNA_Hsa rRNA rRNA -2 5033 4809 2 651 426 20 0 0 chr6 8679524 8679575 -140837462 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 651 206 121 0 0 chr6 8680069 8680102 -140836935 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2 651 1146 68 7 0 chr6 8680102 8680249 -140836788 - B1_Mus1 SINE Alu 0 148 1 2 651 304 236 55 22 chr6 8680334 8680425 -140836612 + L1M2 LINE L1 5574 5667 -624 2 651 366 351 15 0 chr6 8680540 8680674 -140836363 - MER58A DNA MER1_type -21 203 68 2 651 423 0 0 0 chr6 8683399 8683446 -140833591 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 651 1211 235 101 17 chr6 8683766 8684112 -140832925 - MTE2b LTR MaLR 0 379 5 2 651 222 118 0 0 chr6 8685889 8685923 -140831114 + (A)n Simple_repeat Simple_repeat 1 34 0 2 651 216 231 0 0 chr6 8687917 8687969 -140829068 + GA-rich Low_complexity Low_complexity 2 53 0 2 651 552 165 19 0 chr6 8688314 8688472 -140828565 + (TG)n Simple_repeat Simple_repeat 1 161 0 2 651 470 308 58 12 chr6 8688478 8688502 -140828535 - B3A SINE B2 -17 181 159 2 651 200 100 25 0 chr6 8688502 8688542 -140828495 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 651 470 308 58 12 chr6 8688542 8688688 -140828349 - B3A SINE B2 -40 158 3 2 651 378 0 0 0 chr6 8689687 8689729 -140827308 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 651 572 238 39 78 chr6 8689932 8690137 -140826900 + B3A SINE B2 2 198 0 2 651 396 0 0 0 chr6 8690419 8690463 -140826574 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 651 297 247 12 0 chr6 8690464 8690545 -140826492 + GA-rich Low_complexity Low_complexity 2 83 0 2 651 1244 28 7 0 chr6 8691296 8691441 -140825596 - B1_Mus1 SINE Alu -1 147 2 2 651 357 269 26 9 chr6 8691708 8691824 -140825213 - MER5A1 DNA MER1_type -9 157 40 2 651 223 154 0 0 chr6 8693296 8693335 -140823702 - ID2 SINE ID -35 48 10 2 651 223 283 107 102 chr6 8693402 8693579 -140823458 - B4A SINE B4 -66 226 49 2 651 369 227 88 26 chr6 8694178 8694291 -140822746 + PB1D9 SINE Alu 1 120 0 2 651 1086 43 35 7 chr6 8695586 8695728 -140821309 + B1_Mm SINE Alu 1 146 -1 2 651 818 141 0 7 chr6 8695993 8696136 -140820901 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 2 651 236 299 100 62 chr6 8696158 8696368 -140820669 - L1MC4 LINE L1 -134 7861 7644 2 651 272 289 77 70 chr6 8696462 8696748 -140820289 + RMER17C LTR ERVK 70 357 -53 2 651 1067 206 128 37 chr6 8696774 8697102 -140819935 + MTD LTR MaLR 50 407 -12 2 651 727 262 179 12 chr6 8697155 8697484 -140819553 - L1MC4 LINE L1 -946 7096 6713 2 651 392 271 101 112 chr6 8698301 8698865 -140818172 - L1MC4 LINE L1 -1527 6355 5798 2 651 546 274 12 73 chr6 8699024 8699189 -140817848 - B3 SINE B2 -61 155 1 2 651 266 195 13 13 chr6 8699316 8699394 -140817643 + A-rich Low_complexity Low_complexity 3 80 0 2 651 1875 199 172 32 chr6 8700470 8700936 -140816101 + MT2A LTR ERVL 1 531 -2 2 651 536 130 0 11 chr6 8702066 8702159 -140814878 + (TATG)n Simple_repeat Simple_repeat 3 94 0 2 651 488 254 41 21 chr6 8702159 8702304 -140814733 - RSINE1 SINE B4 0 165 18 2 651 240 321 0 0 chr6 8702295 8702351 -140814686 - B4A SINE B4 -209 83 28 2 651 22 0 0 0 chr6 8702667 8702689 -140814348 + AT_rich Low_complexity Low_complexity 1 22 0 2 651 302 245 213 0 chr6 8702692 8702786 -140814251 - PB1D10 SINE Alu -3 114 1 2 651 357 109 0 0 chr6 8703530 8703585 -140813452 + (GGGGA)n Simple_repeat Simple_repeat 2 56 0 2 651 488 63 215 0 chr6 8704984 8705063 -140811974 + B1_Mm SINE Alu 47 142 -5 2 651 3073 206 72 9 chr6 8705091 8705729 -140811308 + Lx5 LINE L1 6369 7046 -4 2 651 693 228 32 64 chr6 8706043 8706292 -140810745 + L1MB1 LINE L1 5927 6167 -1 2 651 196 273 18 0 chr6 8707247 8707302 -140809735 - MIRc SINE MIR -128 140 85 2 651 2699 34 25 0 chr6 8708608 8708931 -140808106 + L1Md_T LINE L1 6251 6581 -1 2 651 591 15 0 0 chr6 8709291 8709359 -140807678 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 651 320 319 44 0 chr6 8709401 8709514 -140807523 - RSINE1 SINE B4 -45 120 3 2 651 624 152 23 0 chr6 8710315 8710447 -140806590 + CT-rich Low_complexity Low_complexity 1 135 0 2 651 396 274 20 0 chr6 8710722 8710824 -140806213 - B4 SINE B4 -143 149 46 2 651 1019 270 154 28 chr6 8710851 8711312 -140805725 - L1MB1 LINE L1 -49 6119 5601 2 651 702 109 26 33 chr6 8711313 8711465 -140805572 + T-rich Low_complexity Low_complexity 1 151 0 2 651 420 271 151 20 chr6 8711500 8711828 -140805209 - L1MB1 LINE L1 -635 5533 5164 2 651 324 339 70 8 chr6 8712417 8712545 -140804492 + RSINE1 SINE B4 2 137 -28 2 651 360 0 0 0 chr6 8712574 8712614 -140804423 + (TAA)n Simple_repeat Simple_repeat 2 41 0 2 651 641 257 55 35 chr6 8712755 8713066 -140803971 - MER33 DNA MER1_type -2 322 6 2 651 207 156 0 0 chr6 8713375 8713407 -140803630 + GA-rich Low_complexity Low_complexity 2 33 0 2 651 411 282 68 17 chr6 8713993 8714170 -140802867 - Tigger12 DNA MER2_type -939 1020 835 2 651 8413 116 27 13 chr6 8716621 8717921 -140799116 + Lx2 LINE L1 5679 6996 -1 2 651 386 255 104 67 chr6 8718776 8718940 -140798097 + MER33 DNA MER1_type 6 175 -149 2 651 45 87 0 0 chr6 8718981 8719096 -140797941 + AT_rich Low_complexity Low_complexity 1 115 0 2 651 291 250 38 0 chr6 8720005 8720085 -140796952 - MIR3 SINE MIR -44 164 82 2 651 217 270 26 26 chr6 8721198 8721274 -140795763 + L2c LINE L2 2272 2347 -1072 2 651 186 308 48 71 chr6 8722090 8722174 -140794863 + L2c LINE L2 3286 3367 -20 2 651 2158 233 113 24 chr6 8723189 8723924 -140793113 - Lx9 LINE L1 -1682 5962 5140 2 651 1827 267 51 40 chr6 8723926 8724402 -140792635 + Lx9 LINE L1 6883 7340 -304 2 651 351 0 0 0 chr6 8724402 8724441 -140792596 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 651 1827 267 51 40 chr6 8724441 8724592 -140792445 + Lx9 LINE L1 7341 7517 -127 2 651 219 188 0 0 chr6 8724594 8724642 -140792395 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 651 279 284 50 40 chr6 8724996 8725095 -140791942 - MLT1A1 LTR MaLR -285 123 24 2 651 3170 152 18 4 chr6 8726085 8726580 -140790457 + Lx2A1 LINE L1 6505 7006 -2 2 651 273 346 12 42 chr6 8726635 8726801 -140790236 + RSINE1 SINE B4 3 163 -2 2 651 614 32 43 0 chr6 8726808 8726901 -140790136 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 651 29 0 0 0 chr6 8728028 8728057 -140788980 + GC_rich Low_complexity Low_complexity 1 29 0 2 651 204 271 32 79 chr6 8729133 8729265 -140787772 - MIRc SINE MIR -101 167 45 2 651 383 240 27 0 chr6 8729305 8729380 -140787657 + ID4 SINE ID 3 79 -4 2 651 362 304 8 25 chr6 8729871 8729989 -140787048 - PB1D10 SINE Alu -1 116 1 2 651 1176 191 54 5 chr6 8730120 8730325 -140786712 + B3 SINE B2 2 216 0 2 651 607 229 27 27 chr6 8730664 8730812 -140786225 - MTEb LTR MaLR -1 378 231 2 651 564 15 0 0 chr6 8730824 8730889 -140786148 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 651 4000 252 101 32 chr6 8730985 8731019 -140786018 - MTE-int LTR MaLR -2 1578 1550 2 651 3825 37 23 0 chr6 8731019 8731455 -140785582 - L1Md_F3 LINE L1 -14 6570 6125 2 651 4000 262 103 43 chr6 8731455 8732814 -140784223 - MTE-int LTR MaLR -31 1549 9 2 651 313 290 54 0 chr6 8732894 8732987 -140784050 + MTE-int LTR MaLR 219 316 -1264 2 651 327 287 199 39 chr6 8732995 8733176 -140783861 - MTEb LTR MaLR -169 210 1 2 651 982 290 84 34 chr6 8733276 8733916 -140783121 + L1MB8 LINE L1 5507 6178 0 2 651 834 284 42 18 chr6 8734072 8734405 -140782632 - RLTR15 LTR ERVK -16 343 3 2 651 479 211 56 92 chr6 8734407 8734646 -140782391 + ORR1D1 LTR MaLR 21 221 -125 2 651 9277 156 31 11 chr6 8735006 8737026 -140780011 + L1VL4 LINE L1 881 2933 -2953 2 651 1445 207 52 112 chr6 8737051 8737692 -140779345 + RLTR31_Mur LTR ERVK 62 553 0 2 651 1680 143 0 18 chr6 8737692 8737977 -140779060 + L1VL4 LINE L1 2928 3207 -2679 2 651 8592 143 14 2 chr6 8737983 8739392 -140777645 - L1_Mur2 LINE L1 -1225 4652 3227 2 651 3951 146 25 0 chr6 8739393 8740036 -140777001 + L1VL4 LINE L1 4697 5355 -531 2 651 2042 172 151 7 chr6 8740043 8740416 -140776621 + Lx3C LINE L1 6466 6887 -89 2 651 246 62 0 0 chr6 8740416 8740448 -140776589 + (CGTG)n Simple_repeat Simple_repeat 1 32 0 2 651 2042 172 151 7 chr6 8740448 8740519 -140776518 + Lx3C LINE L1 6888 6973 -3 2 651 260 222 16 0 chr6 8740522 8740585 -140776452 + ORR1D1 LTR MaLR 321 384 0 2 651 824 262 124 4 chr6 8740830 8741071 -140775966 + B4 SINE B4 3 272 -20 2 651 501 17 0 0 chr6 8741080 8741138 -140775899 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 651 549 0 0 0 chr6 8742307 8742368 -140774669 + (CAAAC)n Simple_repeat Simple_repeat 2 62 0 3 651 451 285 199 23 chr6 8742925 8743277 -140773760 - L1MEc LINE L1 -5938 462 49 3 651 691 332 50 24 chr6 8743335 8743674 -140773363 - ORR1E LTR MaLR -5 354 7 3 651 216 0 0 0 chr6 8743871 8743895 -140773142 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 651 364 65 0 0 chr6 8743895 8743941 -140773096 - B1_Mur4 SINE Alu -9 141 96 3 651 23 68 0 0 chr6 8744175 8744219 -140772818 + AT_rich Low_complexity Low_complexity 1 44 0 3 651 1460 75 5 11 chr6 8744283 8744471 -140772566 - B2_Mm2 SINE B2 -8 187 1 3 651 297 75 0 0 chr6 8744478 8744518 -140772519 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 3 651 30793 70 70 16 chr6 8744520 8750249 -140766788 - L1Md_F2 LINE L1 -2 6580 519 3 651 216 200 0 83 chr6 8750249 8750309 -140766728 - B2_Mm2 SINE B2 -140 55 1 3 651 231 36 0 0 chr6 8750317 8750345 -140766692 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3 651 1131 74 0 0 chr6 8750345 8750480 -140766557 - B1_Mus1 SINE Alu -12 136 2 3 651 473 153 67 8 chr6 8750869 8750988 -140766049 - Lx9 LINE L1 -1 7643 7518 3 651 399 41 0 0 chr6 8750993 8751042 -140765995 + (TATG)n Simple_repeat Simple_repeat 2 50 0 3 651 576 321 12 18 chr6 8751263 8751428 -140765609 - MTEa LTR MaLR 0 379 216 3 651 3204 279 91 7 chr6 8751430 8752356 -140764681 - MTE-int LTR MaLR 0 1580 577 3 651 854 215 52 0 chr6 8752376 8752548 -140764489 + ID_B1 SINE B4 40 220 -4 3 651 21 0 0 0 chr6 8753205 8753226 -140763811 + AT_rich Low_complexity Low_complexity 1 21 0 3 651 466 279 29 0 chr6 8754099 8754203 -140762834 + PB1D10 SINE Alu 7 113 -4 3 651 504 0 0 0 chr6 8754292 8754348 -140762689 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 651 1571 221 30 30 chr6 8754497 8754924 -140762113 + RMER1B Other Other 541 918 -148 3 651 207 0 0 0 chr6 8754924 8754947 -140762090 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3 651 268 200 267 0 chr6 8754956 8755031 -140762006 + RMER1A Other Other 925 1019 -11 3 651 198 303 25 112 chr6 8756245 8756442 -140760595 + L2c LINE L2 2680 2859 -560 3 651 1099 249 81 10 chr6 8756827 8757123 -140759914 - Lx8 LINE L1 -375 7098 6782 3 651 595 226 24 62 chr6 8757183 8757342 -140759695 + B3A SINE B2 10 150 -66 3 651 6153 68 12 66 chr6 8757342 8758191 -140758846 + RLTR13B4 LTR ERVK 1 803 0 3 651 477 269 37 139 chr6 8758191 8758247 -140758790 + B3 SINE B2 151 203 -13 3 651 1827 243 83 23 chr6 8758289 8758800 -140758237 - Lx8 LINE L1 -1 7472 6952 3 651 225 294 0 81 chr6 8758817 8758891 -140758146 + ID4_ SINE ID 2 69 -14 3 651 1067 187 14 28 chr6 8759262 8759457 -140757580 - ORR1C2 LTR MaLR 0 384 192 3 651 372 59 0 0 chr6 8759457 8759508 -140757529 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 651 1067 187 14 28 chr6 8759508 8759526 -140757511 - ORR1C2 LTR MaLR -193 191 174 3 651 237 146 0 0 chr6 8759526 8759574 -140757463 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 651 5559 125 22 74 chr6 8759677 8760628 -140756409 - RLTR13D6 LTR ERVK 0 902 1 3 651 585 318 23 36 chr6 8760884 8760969 -140756068 - B3 SINE B2 0 216 136 3 651 3264 53 42 3 chr6 8760969 8761350 -140755687 - MTA_Mm LTR MaLR 0 396 1 3 651 585 318 23 36 chr6 8761350 8761483 -140755554 - B3 SINE B2 -81 135 1 3 651 222 282 89 49 chr6 8761721 8761901 -140755136 + L2c LINE L2 3086 3304 -83 3 651 2212 165 50 3 chr6 8762130 8762594 -140754443 - Lx4B LINE L1 -1064 5994 5517 3 651 4337 204 45 22 chr6 8762587 8763552 -140753485 + Lx3C LINE L1 5988 6974 -2 3 651 264 30 0 0 chr6 8765786 8765819 -140751218 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 651 704 319 43 29 chr6 8765829 8766039 -140750998 - B4A SINE B4 -22 270 58 3 651 521 250 91 0 chr6 8766056 8766188 -140750849 - RLTR11A LTR ERVK -327 201 58 3 651 224 233 0 0 chr6 8766314 8766357 -140750680 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 651 1199 79 0 0 chr6 8766381 8766521 -140750516 - B1_Mus2 SINE Alu -5 142 3 3 651 360 0 0 0 chr6 8766521 8766561 -140750476 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 651 630 300 22 0 chr6 8767311 8767534 -140749503 + L1MA5 LINE L1 5712 5939 -361 3 651 555 16 0 0 chr6 8767816 8767880 -140749157 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 651 396 0 0 0 chr6 8768335 8768379 -140748658 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 651 180 0 0 0 chr6 8768379 8768398 -140748639 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 651 1373 185 40 46 chr6 8768744 8769073 -140747964 - Lx7 LINE L1 0 7696 7370 3 651 723 165 0 0 chr6 8769138 8769271 -140747766 + GA-rich Low_complexity Low_complexity 3 135 0 3 651 1294 249 127 14 chr6 8769277 8769640 -140747397 - Lx7 LINE L1 -329 7367 6964 3 651 1234 268 71 48 chr6 8771113 8771509 -140745528 + MTD LTR MaLR 1 405 -14 3 651 33 56 0 0 chr6 8771798 8771852 -140745185 + AT_rich Low_complexity Low_complexity 1 54 0 3 651 21 0 0 0 chr6 8771911 8771932 -140745105 + AT_rich Low_complexity Low_complexity 1 21 0 3 651 206 128 0 41 chr6 8772057 8772106 -140744931 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 3 651 618 71 0 0 chr6 8772116 8772200 -140744837 + (GA)n Simple_repeat Simple_repeat 1 84 0 3 651 682 290 16 5 chr6 8772232 8772416 -140744621 - ID_B1 SINE B4 -17 207 22 3 651 33 94 0 0 chr6 8772495 8772591 -140744446 + AT_rich Low_complexity Low_complexity 1 96 0 3 651 1382 259 108 68 chr6 8772620 8772903 -140744134 + L1MA6 LINE L1 3988 4293 -1850 3 651 6200 79 62 58 chr6 8772903 8773839 -140743198 + Lx3A LINE L1 6035 6974 -7 3 651 1382 259 108 68 chr6 8773839 8774339 -140742698 + L1MA6 LINE L1 4294 4803 -1340 3 651 613 306 112 45 chr6 8774400 8774928 -140742109 + L1MA6 LINE L1 5604 6166 -134 3 651 351 312 36 30 chr6 8776282 8776447 -140740590 - MER5A1 DNA MER1_type 0 166 1 3 651 252 0 0 0 chr6 8776622 8776650 -140740387 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 651 903 175 0 12 chr6 8777360 8777528 -140739509 + URR1B DNA MER1_type 60 225 0 3 651 286 342 33 26 chr6 8777862 8778015 -140739022 + Lx8 LINE L1 7174 7327 -146 3 651 2903 148 89 9 chr6 8778277 8778736 -140738301 + RLTR20D LTR ERVK 1 480 -88 3 651 486 0 0 0 chr6 8778736 8778790 -140738247 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 651 2903 148 89 9 chr6 8778790 8778855 -140738182 + RLTR20D LTR ERVK 481 567 -1 3 651 231 61 0 0 chr6 8778994 8779027 -140738010 + (T)n Simple_repeat Simple_repeat 1 33 0 3 651 360 268 62 45 chr6 8779101 8779277 -140737760 + Lx7 LINE L1 7518 7696 0 3 651 436 239 43 17 chr6 8779523 8779638 -140737399 + MER5B DNA MER1_type 2 119 -59 3 651 689 12 24 0 chr6 8781271 8781356 -140735681 + (CAAAA)n Simple_repeat Simple_repeat 1 87 0 3 652 25 0 0 0 chr6 8782228 8782253 -140734784 + AT_rich Low_complexity Low_complexity 1 25 0 3 652 278 67 22 0 chr6 8782277 8782322 -140734715 + (CATA)n Simple_repeat Simple_repeat 2 47 0 3 652 459 359 77 66 chr6 8782406 8782680 -140734357 + B4 SINE B4 3 279 -13 3 652 180 0 0 0 chr6 8782848 8782868 -140734169 + (T)n Simple_repeat Simple_repeat 1 20 0 3 652 326 85 17 0 chr6 8782901 8782960 -140734077 + (CAA)n Simple_repeat Simple_repeat 1 60 0 3 652 2424 78 22 12 chr6 8783706 8784030 -140733007 + ORR1A2 LTR MaLR 1 327 0 3 652 7927 125 59 30 chr6 8784030 8785433 -140731604 + ORR1A2-int LTR MaLR 1 1444 -519 3 652 2233 242 41 52 chr6 8785560 8786239 -140730798 - RMER1C Other Other -2 1340 669 3 652 460 336 174 55 chr6 8786240 8787141 -140729896 + L2a LINE L2 1714 2721 -698 3 652 241 312 30 23 chr6 8787261 8787392 -140729645 + MIR SINE MIR 106 237 -25 3 652 223 329 27 0 chr6 8787622 8787695 -140729342 + L2a LINE L2 3343 3417 -9 3 652 893 260 39 5 chr6 8788060 8788265 -140728772 + B3 SINE B2 5 216 0 3 652 200 140 0 39 chr6 8788557 8788609 -140728428 + (CAGAGA)n Simple_repeat Simple_repeat 4 53 0 3 652 326 304 171 22 chr6 8789054 8789370 -140727667 + L1M4b LINE L1 1611 1973 -5361 3 652 207 0 0 0 chr6 8789472 8789495 -140727542 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 652 213 39 0 0 chr6 8790351 8790377 -140726660 + (TCCCC)n Simple_repeat Simple_repeat 3 28 0 3 652 824 102 16 0 chr6 8790379 8790507 -140726530 + (TTTC)n Simple_repeat Simple_repeat 4 133 0 3 652 778 189 0 8 chr6 8790508 8790641 -140726396 - B1_Mur3 SINE Alu -8 141 10 3 652 325 287 64 0 chr6 8790705 8790799 -140726238 + MLT1E3 LTR MaLR 389 488 -136 3 652 3203 225 54 58 chr6 8791034 8791883 -140725154 + RMER13B LTR ERVK 5 850 -58 3 652 184 316 94 26 chr6 8793117 8793234 -140723803 - L2a LINE L2 -88 3338 3214 3 652 443 349 156 8 chr6 8793261 8793645 -140723392 + L2 LINE L2 2616 3056 -363 3 652 200 231 0 55 chr6 8793705 8793760 -140723277 + (TATG)n Simple_repeat Simple_repeat 3 54 0 3 652 445 339 100 8 chr6 8793768 8794027 -140723010 - B4A SINE B4 -8 284 2 3 652 229 139 0 0 chr6 8794536 8794572 -140722465 - RLTR10E LTR ERVK 0 311 276 3 652 274 29 0 0 chr6 8794566 8794600 -140722437 - RLTR10E LTR ERVK -277 34 1 3 652 238 377 139 33 chr6 8794695 8794846 -140722191 - LTR33 LTR ERVL -306 209 43 3 652 358 300 90 24 chr6 8794999 8795188 -140721849 - MIR SINE MIR -27 241 29 3 652 298 299 48 1 chr6 8795456 8795603 -140721434 - L1ME2 LINE L1 -202 5971 5819 3 652 1824 218 36 0 chr6 8795758 8796116 -140720921 - ORR1C1 LTR MaLR -7 371 1 3 652 2081 125 10 0 chr6 8796785 8797089 -140719948 - ORR1A2 LTR MaLR -1 326 20 3 652 690 285 93 28 chr6 8797089 8797453 -140719584 - L1ME2 LINE L1 -1059 5087 4700 3 652 3050 144 206 10 chr6 8797499 8798115 -140718922 - RMER19A LTR ERVK 0 737 1 3 652 264 100 0 0 chr6 8798117 8798157 -140718880 + (GGGAGA)n Simple_repeat Simple_repeat 4 43 0 3 652 460 280 47 23 chr6 8798558 8798686 -140718351 + ID_B1 SINE B4 94 224 0 3 652 7129 59 14 6 chr6 8798802 8799773 -140717264 - L1Md_F2 LINE L1 -4 6578 5600 3 652 10403 55 10 1 chr6 8799772 8801165 -140715872 + L1Md_F2 LINE L1 4220 5624 -259 3 652 261 0 0 0 chr6 8801528 8801557 -140715480 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 652 3295 41 5 2 chr6 8801751 8802146 -140714891 + MTA_Mm LTR MaLR 1 396 0 4 652 191 36 0 35 chr6 8802516 8802545 -140714492 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 4 652 268 358 21 21 chr6 8804336 8804433 -140712604 - L2b LINE L2 -58 3317 3221 4 652 1161 282 94 44 chr6 8804640 8805400 -140711637 - RMER13A LTR ERVK 0 860 14 4 652 318 50 0 0 chr6 8806776 8806816 -140710221 + (T)n Simple_repeat Simple_repeat 1 40 0 4 652 327 323 136 72 chr6 8809417 8809898 -140707139 - MLT1J-int LTR MaLR -1 1386 852 4 652 274 183 0 27 chr6 8810088 8810161 -140706876 + GA-rich Low_complexity Low_complexity 3 73 0 4 652 844 79 11 48 chr6 8810162 8810349 -140706688 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 4 652 273 284 85 72 chr6 8810463 8810698 -140706339 - RLTR42-int LTR ERVK -4129 1393 1156 4 652 429 331 162 37 chr6 8810698 8811074 -140705963 - MLT1J-int LTR MaLR -511 876 454 4 652 4547 80 2 24 chr6 8811129 8811759 -140705278 - L1Md_F2 LINE L1 -12 6570 5955 4 652 6244 68 1 1 chr6 8811759 8812619 -140704418 + L1_Mm LINE L1 4361 5220 -663 4 652 297 0 0 0 chr6 8812921 8812954 -140704083 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 652 720 164 17 0 chr6 8812954 8813070 -140703967 - B1_Mus1 SINE Alu -30 118 1 4 652 376 248 18 71 chr6 8812969 8813082 -140703955 - MT2B LTR ERVL -344 257 151 4 652 814 179 106 15 chr6 8813320 8813518 -140703519 - B3 SINE B2 0 216 1 4 652 252 0 0 0 chr6 8813666 8813694 -140703343 + (T)n Simple_repeat Simple_repeat 1 28 0 4 652 2496 153 92 12 chr6 8815181 8815670 -140701367 - RLTR11A LTR ERVK 0 528 1 4 652 368 225 14 0 chr6 8815731 8815802 -140701235 + B1_Mur1 SINE Alu 42 113 -36 4 652 1036 256 56 12 chr6 8815799 8816048 -140700989 + B4A SINE B4 19 278 -14 4 652 594 0 0 0 chr6 8816074 8816140 -140700897 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 652 203 349 107 0 chr6 8816602 8816751 -140700286 + MIR SINE MIR 86 250 -12 4 652 1301 249 88 112 chr6 8816820 8817409 -140699628 + RMER15 LTR ERVL 1 575 0 4 652 636 206 8 23 chr6 8817499 8817905 -140699132 + (TATG)n Simple_repeat Simple_repeat 1 399 0 4 652 333 265 215 23 chr6 8818756 8819092 -140697945 - Charlie2a DNA MER1_type -157 2704 2302 4 652 2530 174 79 48 chr6 8819115 8819572 -140697465 + RLTR20B3 LTR ERVK 1 484 -93 4 652 423 0 0 0 chr6 8819572 8819619 -140697418 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 652 2530 174 79 48 chr6 8819619 8819721 -140697316 + RLTR20B3 LTR ERVK 485 577 0 4 652 640 309 20 60 chr6 8819884 8820132 -140696905 - MTEa LTR MaLR -141 238 1 4 652 684 162 20 0 chr6 8820707 8820855 -140696182 + GA-rich Low_complexity Low_complexity 2 152 0 4 652 1731 291 76 44 chr6 8820923 8821130 -140695907 + L1MA5 LINE L1 3362 3555 -2588 4 652 222 62 0 0 chr6 8821130 8821162 -140695875 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 652 1731 291 76 44 chr6 8821162 8822169 -140694868 + L1MA5 LINE L1 3556 4614 -1529 4 652 313 276 34 6 chr6 8822182 8822326 -140694711 + L1MA5 LINE L1 5851 6002 -298 4 652 292 348 62 88 chr6 8822429 8822656 -140694381 - Charlie2a DNA MER1_type -2590 271 51 4 652 458 355 90 53 chr6 8823053 8823410 -140693627 - MER57E1 LTR ERV1 0 372 3 4 652 672 296 118 0 chr6 8823494 8823528 -140693509 + B4A SINE B4 47 83 -209 4 652 558 0 0 0 chr6 8823528 8823590 -140693447 + (CAAAA)n Simple_repeat Simple_repeat 2 63 0 4 652 672 296 118 0 chr6 8823590 8823775 -140693262 + B4A SINE B4 84 291 -1 4 652 1185 90 0 0 chr6 8823796 8824553 -140692484 + (CA)n Simple_repeat Simple_repeat 1 757 0 4 652 431 243 7 0 chr6 8824601 8824753 -140692284 + (CA)n Simple_repeat Simple_repeat 1 153 0 4 652 818 162 6 0 chr6 8824804 8824983 -140692054 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 652 22 0 0 0 chr6 8825095 8825117 -140691920 + AT_rich Low_complexity Low_complexity 1 22 0 4 652 192 271 0 79 chr6 8826087 8826163 -140690874 - L2c LINE L2 -187 3200 3131 4 652 229 335 23 13 chr6 8826170 8826266 -140690771 + MIRb SINE MIR 34 132 -136 4 652 198 227 0 43 chr6 8826437 8826483 -140690554 + MIRb SINE MIR 168 211 -57 4 652 204 269 0 19 chr6 8828034 8828087 -140688950 + CT-rich Low_complexity Low_complexity 2 53 0 4 652 318 309 124 0 chr6 8828687 8828784 -140688253 - PB1D10 SINE Alu 0 117 9 4 652 207 0 0 0 chr6 8829170 8829193 -140687844 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 4 652 1078 274 82 20 chr6 8829364 8829717 -140687320 + MTD LTR MaLR 1 375 -44 4 652 429 188 18 6 chr6 8829701 8829810 -140687227 - MTD LTR MaLR -14 405 290 4 652 524 153 41 0 chr6 8829798 8829896 -140687141 - MTD LTR MaLR -317 102 1 4 652 606 279 41 151 chr6 8829896 8830182 -140686855 + ORR1D2 LTR MaLR 98 351 -19 4 652 323 289 52 0 chr6 8830181 8830278 -140686759 - ORR1D2 LTR MaLR -268 102 1 4 652 1359 61 44 0 chr6 8830590 8830771 -140686266 - B2_Mm2 SINE B2 -6 189 1 4 652 206 351 0 25 chr6 8830829 8830908 -140686129 - MIR SINE MIR -39 223 147 4 652 438 346 65 73 chr6 8830929 8831175 -140685862 + MER21B LTR ERV1 63 306 -557 4 652 42 102 0 0 chr6 8832500 8832647 -140684390 + AT_rich Low_complexity Low_complexity 1 147 0 4 652 269 282 34 34 chr6 8832936 8833061 -140683976 + MLT1D LTR MaLR 335 504 -1 4 652 28 48 0 0 chr6 8833079 8833121 -140683916 + AT_rich Low_complexity Low_complexity 1 42 0 4 652 6692 80 22 3 chr6 8833164 8834116 -140682921 - L1Md_F2 LINE L1 -1 6581 5612 4 652 415 292 22 7 chr6 8834156 8834294 -140682743 + MER2 DNA MER2_type 146 285 -60 4 652 396 82 0 0 chr6 8834891 8834952 -140682085 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 652 426 320 57 23 chr6 8834953 8835129 -140681908 - B3A SINE B2 -16 182 1 4 652 200 172 17 0 chr6 8835138 8835196 -140681841 + CT-rich Low_complexity Low_complexity 2 60 0 4 652 448 333 28 39 chr6 8835256 8835434 -140681603 - B4A SINE B4 0 292 117 4 652 1104 139 225 4 chr6 8835626 8835736 -140681301 - RMER1B Other Other 0 1066 921 4 652 245 29 29 0 chr6 8835736 8835770 -140681267 + (CAA)n Simple_repeat Simple_repeat 2 36 0 4 652 1104 139 225 4 chr6 8835770 8835926 -140681111 - RMER1B Other Other -146 920 742 4 652 183 328 17 0 chr6 8836177 8836235 -140680802 + L2b LINE L2 2858 2916 -503 4 652 190 343 97 35 chr6 8836248 8836393 -140680644 + L2b LINE L2 2999 3152 -223 4 652 182 311 0 0 chr6 8836485 8836530 -140680507 + L2b LINE L2 3290 3334 -92 4 652 367 276 138 0 chr6 8836531 8836647 -140680390 + L2a LINE L2 3290 3421 -5 4 652 563 81 0 0 chr6 8837385 8837472 -140679565 + L1Md_T LINE L1 6496 6582 0 4 652 670 319 6 35 chr6 8837564 8837652 -140679385 - RSINE1 SINE B4 0 165 82 4 652 1779 132 97 90 chr6 8837652 8838042 -140678995 - RLTR9C LTR ERVK 0 393 1 4 652 670 319 6 35 chr6 8838042 8838122 -140678915 - RSINE1 SINE B4 -84 81 2 4 652 3899 148 81 13 chr6 8838265 8838935 -140678102 - RMER19A LTR ERVK 0 737 23 4 652 1003 321 83 41 chr6 8839012 8839723 -140677314 - Lx8 LINE L1 -9 7464 6724 4 652 805 190 6 6 chr6 8839733 8839899 -140677138 + CT-rich Low_complexity Low_complexity 14 180 0 4 652 1057 81 25 0 chr6 8839899 8840059 -140676978 + (TTTC)n Simple_repeat Simple_repeat 3 166 0 4 652 805 190 6 6 chr6 8840059 8840072 -140676965 + polypyrimidine Low_complexity Low_complexity 1 13 0 4 652 1038 60 0 0 chr6 8840084 8840218 -140676819 + (TTTC)n Simple_repeat Simple_repeat 4 137 0 4 652 402 21 0 0 chr6 8840221 8840268 -140676769 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 4 652 529 340 29 5 chr6 8840290 8840500 -140676537 - Lx8 LINE L1 -776 6697 6483 4 652 435 313 30 15 chr6 8840632 8840765 -140676272 - ID_B1 SINE B4 -1 223 89 4 652 446 340 45 6 chr6 8842519 8842676 -140674361 + B4A SINE B4 10 172 -120 4 652 559 286 147 43 chr6 8842964 8843387 -140673650 - L1MC4 LINE L1 -496 7546 7080 4 652 22 0 0 0 chr6 8844151 8844173 -140672864 + AT_rich Low_complexity Low_complexity 1 22 0 4 652 1295 65 0 6 chr6 8844718 8844889 -140672148 - B2_Mm2 SINE B2 -22 173 4 4 652 376 348 107 5 chr6 8845123 8845328 -140671709 - MIRb SINE MIR -8 260 35 4 652 290 360 147 51 chr6 8845336 8845731 -140671306 - MLT1J2 LTR MaLR -2 446 14 4 652 270 81 0 0 chr6 8847620 8847657 -140669380 + (T)n Simple_repeat Simple_repeat 1 37 0 4 652 267 54 0 0 chr6 8848149 8848186 -140668851 + (T)n Simple_repeat Simple_repeat 1 37 0 4 652 427 236 121 38 chr6 8849777 8849909 -140667128 + RSINE1 SINE B4 2 144 -21 4 652 493 192 114 33 chr6 8851452 8851662 -140665375 - Lx9 LINE L1 -1 7643 7417 4 652 1110 183 49 8 chr6 8851636 8851879 -140665158 - Lx9 LINE L1 -118 7526 7274 4 652 1302 218 20 17 chr6 8851886 8852180 -140664857 + Lx9 LINE L1 6984 7278 -366 4 652 225 206 93 27 chr6 8852271 8852346 -140664691 - Lx8 LINE L1 -315 7158 7079 4 652 330 250 13 0 chr6 8852356 8852432 -140664605 - Lx7 LINE L1 -675 7021 6945 4 652 1190 245 155 0 chr6 8852448 8852816 -140664221 - Lx5 LINE L1 -15 7445 7021 4 652 204 40 0 0 chr6 8853016 8853041 -140663996 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 4 652 228 183 20 51 chr6 8853043 8853141 -140663896 + (TTATA)n Simple_repeat Simple_repeat 2 96 0 4 652 5429 24 0 0 chr6 8853208 8853826 -140663211 + L1Md_F3 LINE L1 5951 6568 -16 4 652 459 0 0 0 chr6 8854820 8854871 -140662166 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 652 299 183 86 0 chr6 8854882 8854975 -140662062 - Lx9 LINE L1 -25 7619 7519 4 652 231 36 0 0 chr6 8854982 8855010 -140662027 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 652 274 294 9 6 chr6 8856081 8856162 -140660875 - B1F SINE Alu -2 118 37 4 652 243 250 0 0 chr6 8856167 8856235 -140660802 + CT-rich Low_complexity Low_complexity 6 73 0 4 652 1420 281 82 24 chr6 8856256 8857025 -140660012 - Lx5 LINE L1 -40 7018 6136 4 652 1005 225 101 18 chr6 8857027 8857353 -140659684 + Lx6 LINE L1 5765 6117 -1343 4 652 1103 90 0 0 chr6 8857397 8857542 -140659495 - B1_Mus1 SINE Alu -2 146 2 4 652 195 114 0 0 chr6 8857556 8857591 -140659446 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 4 652 1247 27 0 0 chr6 8857591 8857738 -140659299 - B1_Mm SINE Alu 0 147 1 4 652 514 216 0 20 chr6 8858588 8858687 -140658350 + ID_B1 SINE B4 4 100 -124 4 652 697 226 49 49 chr6 8858716 8858921 -140658116 - B3 SINE B2 -7 209 5 4 652 585 220 8 0 chr6 8860295 8860413 -140656624 - B1_Mur1 SINE Alu -16 133 15 5 652 468 35 0 0 chr6 8860947 8861005 -140656032 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 652 531 302 181 15 chr6 8861426 8861883 -140655154 - L1MA8 LINE L1 -414 5886 5355 5 652 578 286 279 11 chr6 8862710 8862868 -140654169 + MLT1D LTR MaLR 36 201 -304 5 652 405 0 0 0 chr6 8862868 8862913 -140654124 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 652 578 286 279 11 chr6 8862913 8863023 -140654014 + MLT1D LTR MaLR 202 376 -129 5 652 465 19 0 0 chr6 8863044 8863098 -140653939 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 652 585 0 0 0 chr6 8863098 8863162 -140653875 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 652 243 296 0 0 chr6 8863167 8863221 -140653816 - ID4_ SINE ID -29 54 1 5 652 276 338 96 48 chr6 8864398 8864695 -140652342 + ORR1E LTR MaLR 25 355 -4 5 652 3305 199 153 45 chr6 8864804 8865858 -140651179 + RMER1A Other Other 1 892 -138 5 652 1471 210 147 9 chr6 8865861 8866207 -140650830 - Lx5 LINE L1 -5 7045 6652 5 652 495 0 0 0 chr6 8866249 8866304 -140650733 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 652 390 248 49 8 chr6 8866304 8866426 -140650611 + RMER1A Other Other 904 1030 0 5 652 360 0 0 0 chr6 8866442 8866482 -140650555 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 652 196 318 61 0 chr6 8866687 8866753 -140650284 - L2a LINE L2 -53 3373 3304 5 652 406 252 116 43 chr6 8867253 8867420 -140649617 + MER20B DNA MER1_type 484 667 -116 5 652 307 308 89 45 chr6 8867420 8867532 -140649505 + PB1D10 SINE Alu 1 117 0 5 652 1011 125 20 80 chr6 8868066 8868266 -140648771 - B2_Mm2 SINE B2 -4 191 4 5 652 695 330 84 16 chr6 8868511 8868831 -140648206 - MLT1A LTR MaLR -18 356 15 5 652 260 271 18 27 chr6 8869115 8869203 -140647834 - ID4 SINE ID -65 87 3 5 652 262 298 110 12 chr6 8869888 8870061 -140646976 + L1MC4a LINE L1 7679 7868 -14 5 652 585 222 0 0 chr6 8870315 8870450 -140646587 + (TA)n Simple_repeat Simple_repeat 1 135 0 5 652 2580 130 2 10 chr6 8870619 8871016 -140646021 - ORR1B1 LTR MaLR 0 394 1 5 652 270 353 28 56 chr6 8871584 8871797 -140645240 - L2a LINE L2 0 3426 3220 5 652 344 342 69 29 chr6 8871962 8872236 -140644801 - B4A SINE B4 -6 286 2 5 652 279 386 21 0 chr6 8872251 8872391 -140644646 - L2a LINE L2 -256 3170 3028 5 652 366 323 95 0 chr6 8872611 8872800 -140644237 + RMER15 LTR ERVL 355 561 -14 5 652 275 277 157 10 chr6 8873170 8873374 -140643663 + L1MB2 LINE L1 5456 5689 -482 5 652 427 274 105 35 chr6 8873388 8873645 -140643392 + L1MB2 LINE L1 5834 6108 -63 5 652 230 268 14 0 chr6 8873958 8874029 -140643008 - L1MC4a LINE L1 -82 7913 7842 5 652 240 81 54 0 chr6 8874044 8874081 -140642956 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 5 652 881 176 0 6 chr6 8874081 8874258 -140642779 + CT-rich Low_complexity Low_complexity 3 178 0 5 652 225 0 0 0 chr6 8874258 8874283 -140642754 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 5 652 423 273 14 14 chr6 8874343 8874484 -140642553 - L1MC4a LINE L1 -290 7592 7452 5 652 249 294 169 0 chr6 8874700 8874860 -140642177 - L1MC4a LINE L1 -489 7506 7320 5 652 579 247 28 17 chr6 8875078 8875259 -140641778 - L1MC4a LINE L1 -957 6925 6743 5 652 234 0 0 0 chr6 8876525 8876551 -140640486 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 652 206 81 27 0 chr6 8877295 8877332 -140639705 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 652 5118 104 54 47 chr6 8877606 8879455 -140637582 + L1Md_A LINE L1 98 1958 -3925 5 652 14517 20 1 0 chr6 8879453 8881221 -140635816 + L1Md_A LINE L1 3818 5586 -297 5 652 8457 33 0 0 chr6 8881221 8882217 -140634820 + L1Md_A LINE L1 5587 6582 0 5 652 475 353 42 5 chr6 8882254 8882445 -140634592 + B4A SINE B4 87 284 -8 5 652 287 324 20 0 chr6 8882451 8882553 -140634484 + (CA)n Simple_repeat Simple_repeat 1 104 0 5 652 596 126 0 8 chr6 8882990 8883110 -140633927 + (GA)n Simple_repeat Simple_repeat 2 120 0 5 652 242 369 7 71 chr6 8883356 8883496 -140633541 - L2 LINE L2 -615 2804 2674 5 652 1271 21 0 0 chr6 8883585 8883730 -140633307 - B1_Mm SINE Alu -2 145 1 5 652 234 186 117 17 chr6 8884578 8884638 -140632399 + LTR82A LTR ERVL 456 521 -351 5 652 381 319 116 11 chr6 8884660 8884850 -140632187 + LTR82A LTR ERVL 598 807 -65 5 652 1357 199 86 86 chr6 8884983 8885112 -140631925 - RMER1C Other Other -4 1338 1228 5 652 438 20 0 0 chr6 8885112 8885163 -140631874 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 5 652 1357 199 86 86 chr6 8885163 8885499 -140631538 - RMER1C Other Other -115 1227 873 5 652 315 71 0 0 chr6 8886283 8886325 -140630712 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 652 189 171 0 0 chr6 8887176 8887211 -140629826 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 652 258 116 0 0 chr6 8887270 8887313 -140629724 + (TTCG)n Simple_repeat Simple_repeat 2 44 0 5 652 455 285 53 8 chr6 8887377 8887508 -140629529 + B1F2 SINE Alu 11 147 -2 5 652 1559 239 150 13 chr6 8888954 8889407 -140627630 + RLTR20B1 LTR ERVK 49 563 0 5 652 326 349 197 42 chr6 8889660 8890178 -140626859 + L2a LINE L2 2137 2734 -685 5 652 399 227 34 11 chr6 8890231 8890320 -140626717 - PB1D10 SINE Alu -2 115 25 5 652 288 382 88 54 chr6 8890452 8890861 -140626176 + L2a LINE L2 2922 3344 -82 5 652 327 78 0 0 chr6 8890895 8890946 -140626091 + (T)n Simple_repeat Simple_repeat 1 51 0 5 652 261 236 135 0 chr6 8891089 8891178 -140625859 - L1MA7 LINE L1 -1 6290 6190 5 652 242 355 75 11 chr6 8891817 8891911 -140625126 - L2b LINE L2 -15 3360 3261 5 652 306 67 0 0 chr6 8893111 8893156 -140623881 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 5 652 657 47 0 0 chr6 8893157 8893242 -140623795 + (GA)n Simple_repeat Simple_repeat 2 86 0 5 652 21 36 0 0 chr6 8895469 8895497 -140621540 + AT_rich Low_complexity Low_complexity 1 28 0 5 652 180 0 0 0 chr6 8895814 8895834 -140621203 + (T)n Simple_repeat Simple_repeat 1 20 0 5 652 252 185 77 0 chr6 8896653 8896718 -140620319 + RLTR42-int LTR ERVK 3084 3153 -2369 5 652 449 76 15 0 chr6 8896732 8896798 -140620239 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 652 205 151 19 19 chr6 8898039 8898093 -140618944 + GA-rich Low_complexity Low_complexity 1 54 0 5 652 220 204 0 69 chr6 8898996 8899054 -140617983 + CT-rich Low_complexity Low_complexity 4 57 0 5 652 207 100 0 0 chr6 8899944 8899974 -140617063 + (CCCG)n Simple_repeat Simple_repeat 4 33 0 5 652 29 0 0 0 chr6 8901844 8901873 -140615164 + AT_rich Low_complexity Low_complexity 1 29 0 5 652 432 0 0 0 chr6 8902752 8902800 -140614237 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 652 213 62 57 94 chr6 8902963 8903016 -140614021 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 5 652 204 97 0 0 chr6 8903911 8903942 -140613095 + (T)n Simple_repeat Simple_repeat 1 31 0 5 652 855 0 0 0 chr6 8905597 8905692 -140611345 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 5 652 327 49 0 0 chr6 8905708 8905749 -140611288 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 652 234 0 0 0 chr6 8905749 8905774 -140611263 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 652 261 0 0 0 chr6 8905774 8905802 -140611235 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 652 450 0 0 0 chr6 8906640 8906690 -140610347 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 652 414 0 0 0 chr6 8912622 8912668 -140604369 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 652 283 292 39 77 chr6 8912709 8912839 -140604198 + MIRb SINE MIR 112 236 -32 5 653 215 261 0 0 chr6 8913695 8913741 -140603296 - ID4 SINE ID -26 57 12 5 653 228 211 0 0 chr6 8913980 8914056 -140602981 + (TA)n Simple_repeat Simple_repeat 1 76 0 5 653 261 57 0 0 chr6 8915405 8915440 -140601597 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 653 423 295 62 8 chr6 8916831 8916961 -140600076 - B1F1 SINE Alu 0 149 13 5 653 569 200 0 52 chr6 8918127 8918243 -140598794 + B1_Mur1 SINE Alu 32 141 -8 5 653 2461 154 60 20 chr6 8918526 8918929 -140598108 - MTC LTR MaLR 0 421 3 5 653 5488 36 0 0 chr6 8921074 8921683 -140595354 - L1Md_T LINE L1 0 6582 5974 5 653 207 167 0 0 chr6 8922975 8923017 -140594020 + CT-rich Low_complexity Low_complexity 2 43 0 5 653 878 159 7 33 chr6 8923017 8923167 -140593870 - B1_Mus1 SINE Alu -2 146 1 5 653 26 0 0 0 chr6 8923222 8923248 -140593789 + AT_rich Low_complexity Low_complexity 1 26 0 5 653 600 297 31 0 chr6 8923249 8923441 -140593596 - B3A SINE B2 0 198 1 5 653 300 70 0 0 chr6 8923843 8923886 -140593151 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 5 653 31 0 0 0 chr6 8925195 8925226 -140591811 + AT_rich Low_complexity Low_complexity 1 31 0 5 653 232 204 79 11 chr6 8925226 8925315 -140591722 - Lx9 LINE L1 0 7644 7550 5 653 1849 64 239 0 chr6 8925538 8925904 -140591133 - L1_Mus2 LINE L1 -14 6570 6125 5 653 4362 63 0 2 chr6 8925974 8926512 -140590525 - L1Md_F2 LINE L1 0 6582 6061 5 653 189 204 0 0 chr6 8926512 8926539 -140590498 + T-rich Low_complexity Low_complexity 2 28 0 5 653 2774 267 90 15 chr6 8927633 8928455 -140588582 - Lx8 LINE L1 -297 7176 6293 5 653 231 61 0 0 chr6 8928797 8928830 -140588207 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 653 468 0 0 0 chr6 8931388 8931440 -140585597 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 653 357 24 0 0 chr6 8933748 8933790 -140583247 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 5 653 599 0 14 0 chr6 8933917 8933988 -140583049 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 5 653 258 179 0 0 chr6 8933994 8934050 -140582987 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 653 224 149 21 0 chr6 8934353 8934400 -140582637 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 5 653 401 237 88 0 chr6 8934627 8934741 -140582296 + MIR3 SINE MIR 82 205 -3 5 653 263 190 59 12 chr6 8935100 8935159 -140581878 + A-rich Low_complexity Low_complexity 1 62 0 5 653 573 55 0 0 chr6 8935159 8935232 -140581805 + (TCCC)n Simple_repeat Simple_repeat 2 74 0 5 653 263 190 59 12 chr6 8935232 8935257 -140581780 + A-rich Low_complexity Low_complexity 63 89 0 5 653 198 0 0 0 chr6 8935405 8935427 -140581610 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 6 653 483 100 0 0 chr6 8936812 8936882 -140580155 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 653 749 263 9 32 chr6 8937229 8937445 -140579592 - ORR1D1 LTR MaLR 0 374 164 6 653 516 152 0 0 chr6 8937445 8937563 -140579474 + (CAGA)n Simple_repeat Simple_repeat 3 120 0 6 653 693 208 90 48 chr6 8937572 8937739 -140579298 - ORR1D1 LTR MaLR -185 189 16 6 653 4415 90 9 3 chr6 8938151 8938722 -140578315 - L1_Mus3 LINE L1 0 6638 6065 6 653 459 240 54 8 chr6 8939819 8939949 -140577088 - MERVL_2A-int LTR ERVL -1662 4099 3964 6 653 399 41 0 0 chr6 8939961 8940010 -140577027 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 653 4081 5 0 0 chr6 8940322 8940748 -140576289 - L1Md_A LINE L1 0 6582 6157 6 653 21 0 0 0 chr6 8941321 8941342 -140575695 + AT_rich Low_complexity Low_complexity 1 21 0 6 653 740 205 18 82 chr6 8941535 8941705 -140575332 + RSINE1 SINE B4 1 159 -6 6 653 474 328 57 59 chr6 8941755 8942318 -140574719 + L1M7 LINE L1 1137 1698 -4520 6 653 231 304 53 46 chr6 8942706 8942837 -140574200 + L1MC5 LINE L1 6688 6819 -1223 6 653 861 278 91 26 chr6 8943105 8943412 -140573625 + MER2 DNA MER2_type 18 344 -1 6 653 281 285 26 143 chr6 8943448 8943585 -140573452 + L1MC5 LINE L1 6997 7130 -831 6 653 1118 49 14 14 chr6 8943585 8943729 -140573308 + B1_Mm SINE Alu 2 145 -2 6 653 482 334 67 103 chr6 8943729 8944125 -140572912 + L1MC5 LINE L1 7131 7511 -450 6 653 285 348 9 9 chr6 8944125 8944241 -140572796 + PB1D10 SINE Alu 2 117 0 6 653 245 242 0 0 chr6 8944270 8944332 -140572705 + L1ME3B LINE L1 5934 5995 -245 6 653 789 280 42 23 chr6 8945520 8945736 -140571301 - B4A SINE B4 -72 220 1 6 653 207 0 0 0 chr6 8946237 8946260 -140570777 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 653 486 0 0 0 chr6 8947719 8947773 -140569264 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 653 565 265 58 35 chr6 8948709 8948935 -140568102 - B3A SINE B2 0 216 2 6 653 498 83 0 0 chr6 8949067 8949139 -140567898 + (TC)n Simple_repeat Simple_repeat 2 73 0 6 653 236 271 11 66 chr6 8950607 8950698 -140566339 - RCHARR1 DNA MER1_type -786 188 103 6 653 992 104 0 0 chr6 8950833 8950968 -140566069 - B1_Mus1 SINE Alu 0 148 14 6 653 408 200 0 109 chr6 8950878 8950979 -140566058 - MT2B LTR ERVL -344 257 168 6 653 24 32 0 0 chr6 8951088 8951119 -140565918 + AT_rich Low_complexity Low_complexity 1 31 0 6 653 2007 194 61 5 chr6 8951123 8951516 -140565521 - MTC LTR MaLR -2 419 5 6 653 202 250 0 26 chr6 8952111 8952189 -140564848 + T-rich Low_complexity Low_complexity 2 77 0 6 653 278 279 73 17 chr6 8952265 8952411 -140564626 + MIR SINE MIR 113 261 -1 6 653 282 116 0 0 chr6 8953144 8953187 -140563850 + (T)n Simple_repeat Simple_repeat 1 43 0 6 653 195 42 0 0 chr6 8957161 8957185 -140559852 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 653 462 349 54 25 chr6 8957405 8957608 -140559429 - B4A SINE B4 -83 209 1 6 653 293 307 0 0 chr6 8957639 8957714 -140559323 - ID4_ SINE ID -4 79 5 6 653 2188 193 3 8 chr6 8957817 8958193 -140558844 - MTC LTR MaLR -46 375 2 6 653 837 178 7 0 chr6 8958193 8958345 -140558692 - Lx9 LINE L1 -688 6956 6804 6 653 3566 66 2 0 chr6 8958915 8959370 -140557667 + L1_Mus1 LINE L1 6111 6566 -1 6 653 235 304 24 16 chr6 8959958 8960085 -140556952 - L1M3 LINE L1 -380 5917 5790 6 653 387 0 0 0 chr6 8960085 8960128 -140556909 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 653 270 56 0 0 chr6 8960128 8960163 -140556874 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 653 468 149 49 0 chr6 8960212 8960302 -140556735 - B1_Mur4 SINE Alu -5 145 8 6 653 236 220 136 0 chr6 8960301 8960360 -140556677 - B1F2 SINE Alu -42 107 41 6 653 416 190 76 0 chr6 8960307 8960386 -140556651 - 4.5SRNA scRNA scRNA -3 91 7 6 653 437 294 99 42 chr6 8960400 8960869 -140556168 - L1M3 LINE L1 -542 5755 5256 6 653 888 257 28 53 chr6 8960893 8961296 -140555741 + RLTR33 LTR ERVK 176 651 -27 6 653 439 305 112 24 chr6 8961337 8961542 -140555495 - ID_B1 SINE B4 0 224 2 6 653 930 313 119 9 chr6 8961587 8962228 -140554809 - L1M3 LINE L1 -932 5208 4498 6 653 453 281 99 29 chr6 8962386 8962558 -140554479 + MER5A DNA MER1_type 1 184 -5 6 653 235 252 38 19 chr6 8963865 8963970 -140553067 + A-rich Low_complexity Low_complexity 4 110 0 6 653 2365 255 89 18 chr6 8963974 8964865 -140552172 - Lx7 LINE L1 -218 7255 6231 6 653 557 224 4 7 chr6 8965648 8965925 -140551112 + (TG)n Simple_repeat Simple_repeat 1 276 0 6 653 830 172 0 11 chr6 8965965 8966147 -140550890 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 653 231 36 0 0 chr6 8966303 8966331 -140550706 + (TCCCC)n Simple_repeat Simple_repeat 4 31 0 6 653 214 195 0 0 chr6 8966331 8966372 -140550665 + T-rich Low_complexity Low_complexity 1 41 0 6 653 184 234 71 47 chr6 8968291 8968376 -140548661 + L3 LINE CR1 1124 1210 -3279 6 653 368 262 47 47 chr6 8968644 8968772 -140548265 + MLT1A LTR MaLR 1 128 -237 6 653 461 288 70 6 chr6 8968793 8968950 -140548087 + MLT1A LTR MaLR 186 352 -22 6 653 679 274 77 105 chr6 8969876 8970162 -140546875 - B4A SINE B4 0 292 15 6 653 590 219 74 16 chr6 8970222 8970343 -140546694 + B1_Mur1 SINE Alu 7 134 -15 6 653 388 328 8 25 chr6 8970459 8970700 -140546337 + Lx9 LINE L1 7280 7516 -128 6 653 787 177 220 11 chr6 8970736 8970913 -140546124 - B3 SINE B2 0 216 3 6 653 188 264 57 0 chr6 8971360 8971413 -140545624 + MIRc SINE MIR 32 87 -181 6 653 308 331 24 32 chr6 8973191 8973316 -140543721 + MIR SINE MIR 109 232 -30 6 653 528 16 0 0 chr6 8973678 8973739 -140543298 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 653 301 267 98 10 chr6 8974251 8974353 -140542684 - PB1D10 SINE Alu -6 111 1 6 653 1410 59 32 5 chr6 8975527 8975714 -140541323 + B2_Mm2 SINE B2 1 192 -3 6 653 2736 165 35 52 chr6 8975881 8976318 -140540719 + RLTR20B2 LTR ERVK 33 465 -95 6 653 294 106 0 0 chr6 8976318 8976365 -140540672 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 653 2736 165 35 52 chr6 8976365 8976464 -140540573 + RLTR20B2 LTR ERVK 466 560 0 6 653 379 333 115 17 chr6 8978674 8978848 -140538189 - MLT1B LTR MaLR -175 215 25 6 653 229 185 58 0 chr6 8978964 8979022 -140538015 - MIRm SINE MIR -61 147 82 6 653 477 0 0 0 chr6 8979527 8979580 -140537457 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 653 369 296 0 0 chr6 8980273 8980371 -140536666 + PB1D10 SINE Alu 4 101 -16 6 653 2066 171 36 31 chr6 8980710 8981112 -140535925 - RMER19C LTR ERVK -4 898 253 6 653 802 167 46 46 chr6 8981062 8981213 -140535824 + RMER19C LTR ERVK 447 597 -14 6 653 7064 78 17 9 chr6 8981565 8983081 -140533956 - L1_Mus1 LINE L1 0 6567 5028 6 653 272 188 165 10 chr6 8983122 8983219 -140533818 - RLTR15 LTR ERVK -247 112 1 6 653 299 349 124 77 chr6 8984209 8984532 -140532505 - L2b LINE L2 0 3375 3038 6 653 659 112 0 9 chr6 8985634 8985742 -140531295 + (TTC)n Simple_repeat Simple_repeat 1 107 0 6 653 303 28 0 0 chr6 8986342 8986378 -140530659 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 653 234 297 22 66 chr6 8988071 8988208 -140528829 + Lx7 LINE L1 7548 7678 -18 6 653 189 407 96 0 chr6 8990065 8990200 -140526837 + MIRm SINE MIR 1 148 -128 6 653 584 299 74 65 chr6 8993086 8993315 -140523722 - MLT1E LTR MaLR -2 651 421 6 653 554 340 117 19 chr6 8993477 8993852 -140523185 - Lx8 LINE L1 -145 7328 6917 6 653 312 315 72 13 chr6 8993991 8994259 -140522778 + L1MA4 LINE L1 5669 5948 -349 6 653 1196 262 122 17 chr6 8994330 8994683 -140522354 - MTD LTR MaLR -14 405 16 6 653 558 82 0 0 chr6 8994702 8994787 -140522250 + (CCAA)n Simple_repeat Simple_repeat 2 86 0 6 653 320 286 30 30 chr6 8994914 8995015 -140522022 - PB1D10 SINE Alu 0 117 17 6 653 401 329 111 42 chr6 8995131 8995420 -140521617 - MLT1E LTR MaLR -312 315 7 6 653 226 264 38 89 chr6 8995650 8995729 -140521308 + MIR SINE MIR 114 188 -74 6 653 513 0 0 0 chr6 8996036 8996093 -140520944 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 653 321 261 34 11 chr6 8996407 8996496 -140520541 - RSINE1 SINE B4 -31 134 44 6 653 263 371 10 0 chr6 8996686 8996783 -140520254 + ID_B1 SINE B4 79 176 -48 6 653 381 302 9 45 chr6 8996696 8996807 -140520230 + PB1D10 SINE Alu 8 114 -3 6 653 236 347 158 6 chr6 8997382 8997553 -140519484 + MIRb SINE MIR 66 262 -6 6 653 204 354 125 24 chr6 8999125 8999293 -140517744 - MIR SINE MIR -8 254 70 6 653 551 43 42 21 chr6 8999521 8999616 -140517421 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 6 653 518 304 7 52 chr6 8999706 8999859 -140517178 - ID_B1 SINE B4 0 224 79 6 653 7060 154 15 2 chr6 9002154 9003384 -140513653 - L1_Mur2 LINE L1 -644 5233 3987 1 653 389 358 107 38 chr6 9004329 9004674 -140512363 - L2 LINE L2 -569 2850 2482 2 653 636 106 0 0 chr6 9004754 9004848 -140512189 + (TTTC)n Simple_repeat Simple_repeat 2 95 0 3 653 1085 103 0 0 chr6 9004850 9004995 -140512042 - B1_Mus1 SINE Alu -1 147 3 4 653 1021 303 51 46 chr6 9005331 9005701 -140511336 + MTEa LTR MaLR 1 372 -7 5 653 250 372 21 21 chr6 9005913 9006125 -140510912 + MIR SINE MIR 11 220 -48 6 653 23 33 0 0 chr6 9007194 9007224 -140509813 + AT_rich Low_complexity Low_complexity 1 30 0 7 653 413 324 52 0 chr6 9007946 9008119 -140508918 + L1MEc LINE L1 131 312 -6088 8 653 659 301 137 4 chr6 9008123 9008350 -140508687 - MTE2b LTR MaLR -106 273 17 9 653 473 115 11 0 chr6 9008365 9008452 -140508585 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 653 418 335 20 13 chr6 9008465 9008616 -140508421 - RSINE1 SINE B4 -12 153 2 1 653 432 0 0 0 chr6 9008957 9009005 -140508032 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 653 823 287 161 4 chr6 9009082 9009355 -140507682 - MTD LTR MaLR 0 419 104 1 653 2723 227 57 33 chr6 9009680 9010350 -140506687 + Lx6 LINE L1 6772 7457 -3 1 653 1683 293 44 6 chr6 9010436 9010931 -140506106 - Lx8 LINE L1 -138 7335 6822 1 653 301 300 62 62 chr6 9011783 9011943 -140505094 - MIR3 SINE MIR -13 195 36 1 653 385 279 88 12 chr6 9012105 9012265 -140504772 - MER20 DNA MER1_type -26 193 22 1 653 24 0 0 0 chr6 9013313 9013337 -140503700 + AT_rich Low_complexity Low_complexity 1 24 0 1 653 543 16 0 0 chr6 9014358 9014422 -140502615 + (CAAG)n Simple_repeat Simple_repeat 4 67 0 1 653 958 72 65 7 chr6 9014594 9014749 -140502288 + L1_Mus3 LINE L1 6470 6633 -5 2 653 490 16 0 0 chr6 9014993 9015056 -140501981 - L1Md_T LINE L1 0 6582 6520 2 653 282 379 60 15 chr6 9015105 9015239 -140501798 - Arthur1B DNA Tip100 -762 463 324 2 653 385 267 128 14 chr6 9015313 9015461 -140501576 - Arthur1B DNA Tip100 -1045 180 16 2 653 259 336 84 0 chr6 9017106 9017213 -140499824 - MIR SINE MIR -122 140 25 2 653 22 0 0 0 chr6 9017818 9017840 -140499197 + AT_rich Low_complexity Low_complexity 1 22 0 2 653 546 309 29 29 chr6 9018125 9018265 -140498772 - RSINE1 SINE B4 -1 164 25 2 653 555 16 0 0 chr6 9019220 9019284 -140497753 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 653 258 32 0 0 chr6 9019322 9019353 -140497684 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 2 653 213 258 50 70 chr6 9020892 9020992 -140496045 - L2c LINE L2 -264 3123 3026 2 653 196 302 69 69 chr6 9022044 9022204 -140494833 - MIR SINE MIR -87 175 16 2 653 415 342 113 17 chr6 9022472 9022710 -140494327 + MIRb SINE MIR 2 262 -6 3 653 291 316 0 0 chr6 9023231 9023310 -140493727 - ID4_ SINE ID -3 80 2 3 653 750 246 5 25 chr6 9023620 9023816 -140493221 + Lx8 LINE L1 6422 6613 -860 3 653 275 298 23 53 chr6 9023861 9023992 -140493045 + Lx8 LINE L1 6581 6707 -766 3 653 210 71 0 0 chr6 9026455 9026483 -140490554 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 653 206 253 0 37 chr6 9026989 9027108 -140489929 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 3 653 21 0 0 0 chr6 9027530 9027551 -140489486 + AT_rich Low_complexity Low_complexity 1 21 0 3 653 21 0 0 0 chr6 9029350 9029371 -140487666 + AT_rich Low_complexity Low_complexity 1 21 0 3 653 219 36 0 0 chr6 9029609 9029637 -140487400 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 3 653 1241 191 38 4 chr6 9030771 9031033 -140486004 - Lx5 LINE L1 -3 7047 6777 3 653 1607 136 4 0 chr6 9031060 9031311 -140485726 + Lx5 LINE L1 5614 5865 -1185 3 653 278 339 8 42 chr6 9032404 9032524 -140484513 - PB1D10 SINE Alu 0 117 2 4 653 233 238 0 31 chr6 9033426 9033491 -140483546 + MER5A1 DNA MER1_type 98 160 -6 4 653 433 324 32 5 chr6 9034270 9034456 -140482581 + MER53 DNA hAT 2 192 -1 4 653 22 0 0 0 chr6 9034977 9034999 -140482038 + AT_rich Low_complexity Low_complexity 1 22 0 4 653 240 111 0 0 chr6 9036374 9036410 -140480627 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 653 819 264 153 14 chr6 9036534 9036822 -140480215 - Lx8 LINE L1 -52 7421 7094 4 653 335 409 14 14 chr6 9037116 9037255 -140479782 - MER121 Unknown Unknown -6 406 268 4 653 5863 39 0 0 chr6 9038137 9038838 -140478199 + L1Md_T LINE L1 5881 6581 -1 4 653 25 0 0 0 chr6 9038900 9038925 -140478112 + AT_rich Low_complexity Low_complexity 1 25 0 4 653 722 349 99 58 chr6 9040717 9041203 -140475834 + MLT1F LTR MaLR 27 532 -16 4 653 2136 179 205 36 chr6 9042661 9043251 -140473786 - RMER6C LTR ERVK 0 690 1 5 653 648 290 74 92 chr6 9043343 9043787 -140473250 - MTD LTR MaLR -18 403 1 5 654 194 127 0 53 chr6 9044807 9044882 -140472155 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 654 3485 150 9 24 chr6 9044884 9045520 -140471517 - RMER6A LTR ERVK -65 691 65 5 654 432 0 0 0 chr6 9045541 9045589 -140471448 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 654 333 0 0 0 chr6 9046353 9046390 -140470647 + (T)n Simple_repeat Simple_repeat 1 37 0 5 654 3346 41 0 10 chr6 9046687 9047105 -140469932 - L1Md_F2 LINE L1 0 6582 6169 5 654 25 0 0 0 chr6 9047935 9047960 -140469077 + AT_rich Low_complexity Low_complexity 1 25 0 5 654 21 107 0 0 chr6 9048411 9048495 -140468542 + AT_rich Low_complexity Low_complexity 1 84 0 5 654 1919 316 35 17 chr6 9050371 9051061 -140465976 + Lx7 LINE L1 6667 7368 -328 5 654 251 159 28 28 chr6 9051063 9051134 -140465903 + (TTTG)n Simple_repeat Simple_repeat 4 74 0 6 654 248 138 169 0 chr6 9051144 9051209 -140465828 + Lx8 LINE L1 7358 7433 -40 6 654 23 0 0 0 chr6 9051215 9051238 -140465799 + AT_rich Low_complexity Low_complexity 1 23 0 6 654 231 61 0 0 chr6 9052042 9052075 -140464962 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 654 303 309 41 0 chr6 9052549 9052646 -140464391 - MIRc SINE MIR -54 214 114 6 654 180 215 228 0 chr6 9053581 9053660 -140463377 - L2a LINE L2 -284 3142 3046 6 654 306 312 0 0 chr6 9054000 9054077 -140462960 - B4A SINE B4 -8 284 208 6 654 23 0 0 0 chr6 9054587 9054610 -140462427 + AT_rich Low_complexity Low_complexity 1 23 0 6 654 288 0 0 0 chr6 9055040 9055072 -140461965 + (T)n Simple_repeat Simple_repeat 1 32 0 6 654 390 314 57 0 chr6 9056187 9056311 -140460726 + B1F1 SINE Alu 13 143 -6 6 654 1599 209 83 6 chr6 9056507 9056858 -140460179 + ORR1C1 LTR MaLR 1 378 0 7 654 4977 206 163 11 chr6 9056859 9057302 -140459735 + ORR1C1-int LTR MaLR 2 452 -1057 7 654 594 75 0 0 chr6 9057302 9057382 -140459655 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 7 654 4977 206 163 11 chr6 9057382 9058248 -140458789 + ORR1C1-int LTR MaLR 453 1508 -1 7 654 1132 220 84 87 chr6 9058248 9058570 -140458467 + ORR1C1 LTR MaLR 1 323 -55 7 654 798 102 0 0 chr6 9058570 9058688 -140458349 + (TTCC)n Simple_repeat Simple_repeat 1 118 0 7 654 932 105 0 7 chr6 9058688 9058832 -140458205 + (TTTCC)n Simple_repeat Simple_repeat 2 144 0 7 654 1132 220 84 87 chr6 9058832 9058887 -140458150 + ORR1C1 LTR MaLR 324 377 -1 7 654 5859 28 0 6 chr6 9059061 9059754 -140457283 + L1Md_F2 LINE L1 5879 6567 -15 7 654 204 268 186 16 chr6 9060935 9061030 -140456007 - MIRb SINE MIR -122 146 34 7 654 609 287 109 28 chr6 9061163 9061769 -140455268 - L1MA4 LINE L1 -352 5960 5281 7 654 2832 162 67 57 chr6 9061990 9063282 -140453755 + RMER12B LTR ERVK 1 1430 -142 7 654 300 111 0 0 chr6 9063869 9063914 -140453123 + (TTA)n Simple_repeat Simple_repeat 2 46 0 7 654 381 22 0 0 chr6 9067163 9067209 -140449828 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 654 827 246 47 51 chr6 9067311 9067525 -140449512 + B3 SINE B2 1 213 -3 8 654 24 0 0 0 chr6 9067530 9067554 -140449483 + AT_rich Low_complexity Low_complexity 1 24 0 8 654 8720 10 14 0 chr6 9067737 9069014 -140448023 - L1Md_T LINE L1 0 6582 5286 8 654 28 29 0 0 chr6 9070974 9071009 -140446028 + AT_rich Low_complexity Low_complexity 1 35 0 8 654 396 40 0 0 chr6 9071072 9071122 -140445915 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 654 452 277 0 0 chr6 9071126 9071220 -140445817 - RSINE1 SINE B4 -25 140 47 8 654 1125 139 23 0 chr6 9071552 9071725 -140445312 - Lx LINE L1 -417 6237 6061 8 654 2661 113 2 54 chr6 9071725 9072166 -140444871 + Lx LINE L1 6236 6653 -1 8 654 630 293 20 13 chr6 9072183 9072335 -140444702 - B3 SINE B2 -63 153 1 8 654 22 0 0 0 chr6 9072571 9072593 -140444444 + AT_rich Low_complexity Low_complexity 1 22 0 8 654 576 152 0 0 chr6 9074249 9074348 -140442689 + (CA)n Simple_repeat Simple_repeat 2 100 0 8 654 605 13 26 0 chr6 9075200 9075277 -140441760 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 9 654 302 214 12 0 chr6 9075277 9075361 -140441676 + (CA)n Simple_repeat Simple_repeat 2 86 0 9 654 371 325 82 36 chr6 9075972 9076192 -140440845 + MLT1C LTR MaLR 51 280 -187 9 654 542 310 6 25 chr6 9076192 9076351 -140440686 + B3 SINE B2 38 193 -23 9 654 225 0 0 0 chr6 9077904 9077929 -140439108 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 654 382 345 114 12 chr6 9079703 9079870 -140437167 + L3 LINE CR1 3195 3378 -1111 9 654 255 281 0 36 chr6 9080071 9080158 -140436879 + Lx9 LINE L1 5836 5925 -375 9 654 261 0 0 0 chr6 9081825 9081854 -140435183 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 654 275 355 114 13 chr6 9082126 9082459 -140434578 + L2a LINE L2 2731 3098 -328 9 654 571 103 0 20 chr6 9083154 9083253 -140433784 + (CAA)n Simple_repeat Simple_repeat 2 98 0 9 654 307 253 52 21 chr6 9083269 9083366 -140433671 + MER20 DNA MER1_type 116 215 -4 1 654 588 158 0 0 chr6 9084421 9084554 -140432483 + CT-rich Low_complexity Low_complexity 2 134 0 1 654 548 267 58 0 chr6 9084555 9084675 -140432362 - B1_Mur2 SINE Alu -22 127 1 1 654 526 326 11 37 chr6 9085508 9085696 -140431341 + B3A SINE B2 5 187 -11 1 654 549 44 0 0 chr6 9086133 9086201 -140430836 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 1 654 198 152 33 17 chr6 9086210 9086270 -140430767 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 654 7714 163 35 5 chr6 9087084 9088973 -140428064 - Lx2B LINE L1 -2 6998 5044 1 654 37868 31 0 0 chr6 9089114 9095589 -140421448 - L1Md_T LINE L1 0 6585 66 1 654 216 317 47 58 chr6 9098077 9098205 -140418832 + MIRm SINE MIR 37 167 -41 1 654 984 256 0 0 chr6 9098521 9098736 -140418301 - B3 SINE B2 0 216 2 1 654 267 31 0 0 chr6 9102630 9102662 -140414375 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 654 1011 214 5 45 chr6 9102868 9102983 -140414054 - ORR1C2 LTR MaLR 0 384 274 1 654 3248 39 15 0 chr6 9102983 9103373 -140413664 + MTA_Mm LTR MaLR 1 396 0 1 654 1011 214 5 45 chr6 9103373 9103477 -140413560 - ORR1C2 LTR MaLR -111 273 174 1 654 186 174 0 0 chr6 9103478 9103524 -140413513 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 1 654 776 174 25 106 chr6 9103526 9103725 -140413312 - ORR1C2 LTR MaLR -191 183 1 1 654 212 0 36 0 chr6 9104097 9104125 -140412912 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 654 373 344 0 0 chr6 9104140 9104262 -140412775 - Lx8 LINE L1 -162 7311 7190 1 654 1583 124 9 0 chr6 9104818 9105044 -140411993 - Lx4A LINE L1 -548 6510 6283 1 654 1582 187 14 3 chr6 9105045 9105329 -140411708 + Lx4A LINE L1 6772 7058 0 1 654 228 67 0 0 chr6 9106981 9107011 -140410026 + (TCTCCC)n Simple_repeat Simple_repeat 2 31 0 1 654 302 329 161 0 chr6 9107012 9107155 -140409882 - HAL1-3A_ME LINE L1 -419 2439 2274 1 654 197 267 49 74 chr6 9107905 9107986 -140409051 + L4 LINE RTE 1346 1424 -605 1 654 665 249 36 31 chr6 9108198 9108393 -140408644 + MER117 DNA MER1_type 1 196 -1 1 654 282 327 73 0 chr6 9109936 9110046 -140406991 + MIRb SINE MIR 37 154 -114 1 654 26 88 0 0 chr6 9110205 9110273 -140406764 + AT_rich Low_complexity Low_complexity 1 68 0 1 654 277 351 14 0 chr6 9111104 9111178 -140405859 - ID4 SINE ID -6 77 3 1 654 387 0 0 0 chr6 9111847 9111890 -140405147 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 1 654 1044 88 0 0 chr6 9111890 9112026 -140405011 - B1_Mus1 SINE Alu -12 136 1 1 654 255 186 69 28 chr6 9112048 9112120 -140404917 + MER63B DNA AcHobo 360 434 -2 1 654 1409 90 32 19 chr6 9112693 9112909 -140404128 + L1_Mus3 LINE L1 6419 6637 -1 1 654 766 183 228 0 chr6 9113445 9113545 -140403492 + Lx9 LINE L1 7368 7469 -175 1 654 374 39 19 0 chr6 9113545 9113597 -140403440 + (TATG)n Simple_repeat Simple_repeat 4 56 0 1 654 766 183 228 0 chr6 9113597 9113715 -140403322 + Lx9 LINE L1 7470 7635 -9 1 654 1136 202 106 39 chr6 9113826 9114109 -140402928 - ORR1A4 LTR MaLR -8 321 20 1 654 513 0 0 0 chr6 9114111 9114168 -140402869 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 654 428 287 75 75 chr6 9114582 9114770 -140402267 - B3A SINE B2 0 198 11 1 654 269 329 156 9 chr6 9115262 9115474 -140401563 - MIRb SINE MIR -20 248 6 1 654 1703 313 93 25 chr6 9117059 9117938 -140399099 - Lx9 LINE L1 -207 7437 6499 1 654 2208 161 68 2 chr6 9117951 9118394 -140398643 - L1_Mur2 LINE L1 -514 5363 4892 1 654 7232 120 6 4 chr6 9118393 9119689 -140397348 + Lx LINE L1 5348 6647 -7 1 654 213 94 0 0 chr6 9119693 9119725 -140397312 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 1 654 278 331 41 8 chr6 9119737 9119859 -140397178 - Lx9 LINE L1 -1161 6483 6358 1 654 459 0 0 0 chr6 9119893 9119944 -140397093 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 654 450 194 115 46 chr6 9119944 9120074 -140396963 + Lx9 LINE L1 5437 5575 -272 1 654 341 186 0 2 chr6 9120072 9120139 -140396898 + Lx9 LINE L1 5789 5891 -1753 1 654 459 52 0 0 chr6 9120208 9120266 -140396771 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 654 306 152 0 0 chr6 9120466 9120525 -140396512 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 654 209 387 50 32 chr6 9121256 9121475 -140395562 - MIRb SINE MIR -15 253 31 1 654 185 274 137 0 chr6 9121588 9121661 -140395376 + MIRb SINE MIR 132 214 -54 1 654 216 86 0 0 chr6 9123041 9123076 -140393961 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 654 932 213 41 23 chr6 9123076 9123297 -140393740 + URR1B DNA MER1_type 1 225 0 1 654 1088 62 20 27 chr6 9123477 9123625 -140393412 + B1_Mus1 SINE Alu 2 148 0 1 654 387 47 45 34 chr6 9123625 9123714 -140393323 + (CAAAA)n Simple_repeat Simple_repeat 1 90 0 1 654 292 94 38 0 chr6 9123785 9123838 -140393199 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 1 654 227 241 0 0 chr6 9123838 9123896 -140393141 + GA-rich Low_complexity Low_complexity 1 58 0 1 654 463 272 91 20 chr6 9124206 9124405 -140392632 - L1M4c LINE L1 -2109 4270 4058 1 654 4285 79 2 0 chr6 9124432 9124989 -140392048 - L1_Mus1 LINE L1 -2 6565 6008 1 654 4986 103 2 60 chr6 9124991 9125929 -140391108 + L1_Mus1 LINE L1 5143 6046 -592 1 654 254 259 0 0 chr6 9125926 9125984 -140391053 - L1M4c LINE L1 -2313 4066 4009 1 654 28 29 0 0 chr6 9126006 9126041 -140390996 + AT_rich Low_complexity Low_complexity 1 35 0 1 654 237 348 73 7 chr6 9126175 9126311 -140390726 - L1M4c LINE L1 -2596 3783 3639 1 654 1408 273 62 48 chr6 9126586 9127505 -140389532 - L1M4c LINE L1 -3142 3237 2303 1 654 624 209 13 20 chr6 9127590 9127741 -140389296 - URR1B DNA MER1_type 0 225 76 1 654 1013 243 83 26 chr6 9127741 9128007 -140389030 + Lx6 LINE L1 6178 6458 -1002 1 654 927 27 0 0 chr6 9128009 9128119 -140388918 + (TTCCC)n Simple_repeat Simple_repeat 1 110 0 1 654 1149 118 0 0 chr6 9128119 9128297 -140388740 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 1 654 877 131 11 17 chr6 9128304 9128483 -140388554 + CT-rich Low_complexity Low_complexity 2 179 0 1 654 2675 259 21 5 chr6 9128500 9129114 -140387923 + Lx6 LINE L1 6654 7277 -183 1 654 323 134 0 29 chr6 9129543 9129612 -140387425 + CT-rich Low_complexity Low_complexity 1 67 0 1 654 1174 45 0 27 chr6 9129727 9129910 -140387127 + (ATG)n Simple_repeat Simple_repeat 2 179 0 1 654 447 19 0 0 chr6 9130022 9130074 -140386963 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 654 240 380 9 36 chr6 9130564 9130676 -140386361 + L3b LINE CR1 288 396 -86 1 654 420 167 89 24 chr6 9132207 9132330 -140384707 + Lx9 LINE L1 7513 7643 -1 1 654 211 362 82 34 chr6 9132921 9133067 -140383970 + MIRb SINE MIR 16 168 -100 1 654 880 180 0 20 chr6 9133543 9133802 -140383235 + CT-rich Low_complexity Low_complexity 1 253 0 1 654 374 85 0 17 chr6 9133802 9133862 -140383175 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 1 654 236 273 15 15 chr6 9133914 9133981 -140383056 - ID4 SINE ID -16 67 1 1 654 245 324 13 13 chr6 9133993 9134068 -140382969 - PB1D10 SINE Alu -7 110 36 1 654 4729 62 5 5 chr6 9135120 9135736 -140381301 - L1Md_F2 LINE L1 -1 6581 5966 1 654 4927 174 27 14 chr6 9136308 9137259 -140379778 - Lx4B LINE L1 -4 7054 6091 1 654 236 140 58 39 chr6 9137275 9137327 -140379710 - PB1D10 SINE Alu -2 115 63 1 654 609 284 0 0 chr6 9137282 9137416 -140379621 - ID_B1 SINE B4 -7 217 84 1 654 710 260 61 84 chr6 9138216 9138291 -140378746 + B3 SINE B2 1 85 -131 1 654 3185 230 52 63 chr6 9138291 9139205 -140377832 - RMER13B LTR ERVK 0 908 5 1 654 710 260 61 84 chr6 9139205 9139343 -140377694 + B3 SINE B2 86 209 -7 1 654 351 0 0 0 chr6 9139507 9139546 -140377491 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 654 271 324 39 10 chr6 9139890 9139993 -140377044 - MIR3 SINE MIR -37 171 66 1 654 261 0 0 0 chr6 9140026 9140055 -140376982 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 654 227 266 25 0 chr6 9142107 9142186 -140374851 + CT-rich Low_complexity Low_complexity 2 82 0 1 654 315 378 30 77 chr6 9142213 9142448 -140374589 - B4A SINE B4 -56 236 13 1 654 231 88 0 0 chr6 9142611 9142645 -140374392 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 654 265 263 0 0 chr6 9142651 9142708 -140374329 - B4A SINE B4 -18 274 218 1 654 537 276 63 16 chr6 9142713 9142900 -140374137 - B3A SINE B2 -9 186 1 1 654 222 150 0 0 chr6 9142914 9142954 -140374083 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1 654 1024 230 5 14 chr6 9142968 9143184 -140373853 - B3 SINE B2 -1 215 2 1 654 645 297 77 10 chr6 9143213 9143407 -140373630 - B4A SINE B4 -85 207 1 1 654 185 65 0 31 chr6 9144425 9144457 -140372580 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 654 446 297 48 77 chr6 9144459 9144627 -140372410 - RSINE1 SINE B4 0 165 3 1 654 4476 46 35 0 chr6 9146834 9147404 -140369633 - L1_Mus1 LINE L1 0 6567 5978 1 654 416 320 71 79 chr6 9147428 9147770 -140369267 - RLTR11A2 LTR ERVK -177 350 11 1 654 1773 145 53 31 chr6 9147770 9148090 -140368947 - ORR1A2 LTR MaLR 0 327 1 1 654 493 341 103 30 chr6 9148868 9149198 -140367839 - ORR1E LTR MaLR 0 359 6 1 654 265 288 54 0 chr6 9149800 9149911 -140367126 + Lx7 LINE L1 7580 7696 0 1 654 236 338 0 0 chr6 9152130 9152204 -140364833 + B4A SINE B4 11 84 -208 1 654 200 370 35 81 chr6 9152342 9152601 -140364436 - L2 LINE L2 -440 2979 2733 1 654 274 324 14 0 chr6 9152695 9152769 -140364268 + B4A SINE B4 124 198 -94 1 654 267 31 0 0 chr6 9152816 9152848 -140364189 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 654 218 302 0 0 chr6 9153592 9153635 -140363402 + MIRb SINE MIR 24 66 -202 1 654 22 56 0 0 chr6 9155944 9155980 -140361057 + AT_rich Low_complexity Low_complexity 1 36 0 1 654 332 343 78 44 chr6 9157106 9157402 -140359635 - L2 LINE L2 -397 3022 2717 1 654 1064 108 0 0 chr6 9159582 9159730 -140357307 - B1_Mus1 SINE Alu 0 148 1 1 654 2818 78 0 13 chr6 9159799 9160190 -140356847 - L1Md_F2 LINE L1 -12 6570 6185 1 654 462 337 69 0 chr6 9160363 9160565 -140356472 + Cheshire DNA MER1_type 6 221 -2199 2 654 405 0 0 0 chr6 9161369 9161414 -140355623 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 654 2845 258 12 5 chr6 9163432 9164082 -140352955 - Lx6 LINE L1 -479 6981 6327 2 654 1315 253 52 22 chr6 9164069 9164473 -140352564 + Lx7 LINE L1 6997 7412 -284 2 654 1145 192 70 76 chr6 9164474 9164817 -140352220 + Lx7 LINE L1 7356 7696 0 2 654 750 337 34 0 chr6 9166468 9166732 -140350305 + ERVL-E-int LTR ERVL 2209 2481 -3186 2 654 260 303 33 22 chr6 9166876 9166967 -140350070 + ERVL-E-int LTR ERVL 2896 2987 -2680 2 654 230 136 0 22 chr6 9167436 9167481 -140349556 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 654 234 315 0 0 chr6 9167503 9167557 -140349480 - tRNA-Ala-GCY_ tRNA tRNA -9 66 13 2 654 269 318 45 18 chr6 9169327 9169439 -140347598 + MER5A1 DNA MER1_type 2 116 -50 2 654 807 111 0 32 chr6 9169560 9169746 -140347291 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 654 286 23 0 0 chr6 9172124 9172168 -140344869 - L1Md_A LINE L1 0 6582 6539 2 654 694 82 43 25 chr6 9172307 9172470 -140344567 + (TG)n Simple_repeat Simple_repeat 2 167 0 2 654 221 378 40 20 chr6 9173228 9173379 -140343658 - MIRb SINE MIR -58 210 57 2 654 326 195 13 0 chr6 9173805 9173882 -140343155 + GA-rich Low_complexity Low_complexity 1 78 0 2 654 488 77 0 13 chr6 9173950 9174029 -140343008 + (CAAAA)n Simple_repeat Simple_repeat 3 80 0 2 654 272 351 0 25 chr6 9174177 9174256 -140342781 + Charlie12 DNA MER1_type 5 81 -2792 2 654 252 0 0 0 chr6 9174295 9174323 -140342714 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 654 207 0 0 0 chr6 9174427 9174450 -140342587 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 655 255 114 0 0 chr6 9175085 9175129 -140341908 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 2 655 518 270 11 97 chr6 9175314 9175490 -140341547 - RSINE1 SINE B4 0 165 5 2 655 810 255 28 0 chr6 9175597 9175844 -140341193 - Lx9 LINE L1 -8 7636 7383 2 655 2075 197 70 52 chr6 9178079 9178577 -140338460 - RMER1B Other Other -4 1062 556 2 655 767 344 77 58 chr6 9179287 9179808 -140337229 - MT2A LTR ERVL -2 531 1 2 655 279 224 19 9 chr6 9180235 9180343 -140336694 + CT-rich Low_complexity Low_complexity 1 109 0 2 655 244 306 26 53 chr6 9181193 9181345 -140335692 + L1MC4 LINE L1 7762 7909 -133 2 655 532 297 144 46 chr6 9181895 9182251 -140334786 - Lx7 LINE L1 -986 6710 6311 2 655 423 311 137 37 chr6 9182253 9182411 -140334626 + B3 SINE B2 3 179 -37 2 655 207 114 0 0 chr6 9182411 9182446 -140334591 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 655 423 311 137 37 chr6 9182446 9182477 -140334560 + B3 SINE B2 180 210 -6 2 655 180 0 0 0 chr6 9183867 9183887 -140333150 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 2 655 249 197 114 38 chr6 9183904 9184036 -140333001 + Lx9 LINE L1 7503 7644 0 2 655 198 91 0 0 chr6 9184395 9184428 -140332609 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 2 655 408 270 31 41 chr6 9186630 9186780 -140330257 - MLT1A1 LTR MaLR -3 405 205 2 655 261 0 0 0 chr6 9188640 9188669 -140328368 + (T)n Simple_repeat Simple_repeat 1 29 0 2 655 228 214 142 25 chr6 9189097 9189217 -140327820 - L1MA9 LINE L1 -126 6186 6053 2 655 432 0 0 0 chr6 9189386 9189434 -140327603 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 655 534 227 107 11 chr6 9189512 9189690 -140327347 - L1MA9 LINE L1 -602 5698 5504 2 655 492 18 0 0 chr6 9190655 9190712 -140326325 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 655 345 295 35 26 chr6 9191579 9191694 -140325343 + PB1D10 SINE Alu 1 116 -1 2 655 21 0 0 0 chr6 9193270 9193291 -140323746 + AT_rich Low_complexity Low_complexity 1 21 0 2 655 238 282 23 68 chr6 9193318 9193451 -140323586 - L1MA7 LINE L1 -37 6131 6005 2 655 241 351 42 48 chr6 9193596 9193819 -140323218 - MIRb SINE MIR -9 259 33 2 655 405 0 0 0 chr6 9195341 9195386 -140321651 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 655 188 154 19 0 chr6 9196481 9196533 -140320504 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 655 392 184 185 46 chr6 9201950 9202058 -140314979 - B1_Mur3 SINE Alu -22 127 5 2 655 351 0 0 0 chr6 9202277 9202316 -140314721 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 655 514 255 216 52 chr6 9205527 9205796 -140311241 - L2 LINE L2 -546 2873 2561 2 655 938 251 5 0 chr6 9205863 9206070 -140310967 + B3 SINE B2 9 216 0 2 655 27 29 0 0 chr6 9206898 9206932 -140310105 + AT_rich Low_complexity Low_complexity 1 34 0 2 655 321 310 144 26 chr6 9208330 9208624 -140308413 - L1ME1 LINE L1 -2 6177 5848 2 655 256 348 72 20 chr6 9208649 9209051 -140307986 - L1ME1 LINE L1 -451 5728 5306 2 655 310 308 80 27 chr6 9209548 9209889 -140307148 - L1ME1 LINE L1 -3277 2869 2506 2 655 536 0 16 0 chr6 9209914 9209978 -140307059 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 2 655 232 283 0 48 chr6 9210327 9210390 -140306647 - ID4 SINE ID -17 66 7 2 655 39 104 0 0 chr6 9210561 9210705 -140306332 + AT_rich Low_complexity Low_complexity 1 144 0 2 655 314 172 0 0 chr6 9211507 9211565 -140305472 - RMER5 LTR ERV1 -30 504 447 2 655 1277 197 51 15 chr6 9211578 9211851 -140305186 - RMER5 LTR ERV1 -190 344 62 2 655 249 83 0 0 chr6 9212433 9212469 -140304568 + (A)n Simple_repeat Simple_repeat 1 36 0 2 655 285 350 25 16 chr6 9212568 9212690 -140304347 + MIRb SINE MIR 111 233 -35 2 655 2170 188 50 31 chr6 9213048 9213565 -140303472 - RLTR11A2 LTR ERVK 0 527 1 2 655 204 309 0 0 chr6 9214321 9214389 -140302648 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 655 442 219 211 15 chr6 9214413 9214612 -140302425 - Lx9 LINE L1 -2 7642 7405 2 655 2457 222 41 0 chr6 9214609 9215126 -140301911 + Lx9 LINE L1 6887 7424 -220 2 655 1133 322 84 40 chr6 9215813 9216193 -140300844 + Tigger7 DNA MER2_type 11 410 -295 2 655 1070 165 91 10 chr6 9216193 9216401 -140300636 - URR1B DNA MER1_type 0 225 1 2 655 947 314 155 15 chr6 9216401 9216651 -140300386 + MER44D DNA MER2_type 411 693 -12 2 655 540 213 0 0 chr6 9217382 9217504 -140299533 + (TATATG)n Simple_repeat Simple_repeat 2 123 0 2 655 531 323 94 35 chr6 9217505 9217707 -140299330 - B3 SINE B2 -2 214 1 2 655 226 341 48 55 chr6 9218394 9218686 -140298351 + L1M5 LINE L1 5548 5837 -287 2 655 193 0 61 30 chr6 9219330 9219363 -140297674 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 655 257 286 130 28 chr6 9219842 9219950 -140297087 - L2a LINE L2 0 3426 3308 2 655 901 295 96 15 chr6 9220320 9220644 -140296393 + MLT1A0 LTR MaLR 16 365 0 2 655 239 313 15 0 chr6 9221058 9221125 -140295912 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 2 655 1862 292 55 34 chr6 9222433 9223266 -140293771 + Lx7 LINE L1 6179 7029 -667 2 655 3996 191 78 23 chr6 9223276 9223499 -140293538 + Lx7 LINE L1 2799 3046 -2834 2 655 495 0 0 0 chr6 9223499 9223554 -140293483 + (CAA)n Simple_repeat Simple_repeat 3 57 0 2 655 3996 187 80 23 chr6 9223554 9224385 -140292652 + Lx7 LINE L1 3047 3895 -1985 2 655 185 0 0 39 chr6 9224385 9224411 -140292626 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2 655 4043 190 41 23 chr6 9224418 9225297 -140291740 - L1_Mus4 LINE L1 -13 6623 5729 2 655 7512 221 51 37 chr6 9225294 9228116 -140288921 + Lx7 LINE L1 3888 6749 -947 2 655 303 121 0 0 chr6 9228116 9228174 -140288863 + (A)n Simple_repeat Simple_repeat 1 58 0 2 655 8108 103 12 9 chr6 9228225 9229768 -140287269 + L1Md_F LINE L1 423 1976 -3907 2 655 185 0 40 0 chr6 9229768 9229793 -140287244 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 655 8108 77 20 2 chr6 9229793 9230273 -140286764 + L1Md_F LINE L1 1977 2457 -3426 2 655 1505 57 0 0 chr6 9230269 9230463 -140286574 + L1Md_F2 LINE L1 5393 5586 -297 2 655 7111 89 5 6 chr6 9230463 9231448 -140285589 + L1Md_F2 LINE L1 5587 6570 -12 2 655 855 234 115 0 chr6 9231519 9231745 -140285292 + Lx7 LINE L1 6783 7034 -662 2 655 864 221 52 110 chr6 9232740 9232858 -140284179 - Lx7 LINE L1 -3 7693 7581 2 655 6127 76 5 2 chr6 9232858 9233672 -140283365 + L1Md_F2 LINE L1 5763 6578 -4 2 655 864 221 52 110 chr6 9233672 9233898 -140283139 - Lx7 LINE L1 -116 7580 7369 2 655 999 100 0 0 chr6 9233942 9234092 -140282945 + (GAAA)n Simple_repeat Simple_repeat 3 152 0 2 655 347 214 47 12 chr6 9234411 9234496 -140282541 - ORR1B1 LTR MaLR -1 418 331 2 655 5690 92 22 1 chr6 9234765 9235547 -140281490 - Lx3_Mus LINE L1 0 7009 6212 2 655 1116 136 59 64 chr6 9235580 9235784 -140281253 - RLTR25A LTR ERVK -535 568 366 2 655 1194 202 79 105 chr6 9235805 9236120 -140280917 - ORR1B1 LTR MaLR -51 343 37 2 655 264 385 20 34 chr6 9236111 9236259 -140280778 - MTD LTR MaLR -232 187 42 2 655 1772 122 18 49 chr6 9236569 9236897 -140280140 - Lx LINE L1 -8 6646 6329 2 655 2970 73 17 0 chr6 9236899 9237312 -140279725 - Lx LINE L1 -464 6190 5771 2 655 2111 157 50 3 chr6 9237314 9237697 -140279340 - Lx3C LINE L1 0 6976 6576 2 655 180 158 0 0 chr6 9237761 9237799 -140279238 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 655 21 71 0 0 chr6 9237848 9237890 -140279147 + AT_rich Low_complexity Low_complexity 1 42 0 2 655 598 284 118 93 chr6 9238164 9238646 -140278391 + L1M5 LINE L1 2460 2953 -3193 2 655 2762 188 25 10 chr6 9238647 9239290 -140277747 + Lx2 LINE L1 446 1081 -5643 2 655 6317 22 0 1 chr6 9239293 9240023 -140277014 + L1Md_A LINE L1 5854 6582 0 2 655 28441 97 9 3 chr6 9240430 9245637 -140271400 + Lx2 LINE L1 1761 6997 0 2 655 522 0 0 0 chr6 9245771 9245829 -140271208 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 655 2313 120 210 27 chr6 9246348 9246829 -140270208 + RLTR6_Mm LTR ERV1 37 605 -49 2 655 63462 16 18 1 chr6 9246829 9254481 -140262556 + RLTR6-int LTR ERV1 1 7778 0 2 655 2220 114 220 26 chr6 9254590 9255049 -140261988 + RLTR6_Mm LTR ERV1 37 584 -70 2 655 2354 72 13 0 chr6 9255681 9255986 -140261051 - L1_Mus1 LINE L1 0 6567 6259 2 655 1740 57 4 0 chr6 9255986 9256214 -140260823 + L1_Mus1 LINE L1 6012 6240 -327 2 655 24 32 0 0 chr6 9256317 9256348 -140260689 + AT_rich Low_complexity Low_complexity 1 31 0 2 655 432 37 0 0 chr6 9256380 9256434 -140260603 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 655 722 307 84 4 chr6 9256488 9256727 -140260310 - B4A SINE B4 -25 267 10 2 655 243 0 0 0 chr6 9257491 9257518 -140259519 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 655 2312 289 105 9 chr6 9257552 9258574 -140258463 - Lx6 LINE L1 -26 7434 6105 2 655 714 242 6 11 chr6 9258582 9258762 -140258275 + Lx6 LINE L1 5829 6007 -1453 2 655 1329 265 37 12 chr6 9258861 9259270 -140257767 - Lx8 LINE L1 -340 7133 6715 2 655 344 302 0 32 chr6 9259276 9259399 -140257638 - Lx8 LINE L1 -710 6763 6645 3 655 345 317 127 16 chr6 9259418 9259471 -140257566 - ORR1E LTR MaLR -6 353 301 3 655 405 0 0 0 chr6 9259471 9259516 -140257521 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 655 345 317 127 16 chr6 9259516 9259651 -140257386 - ORR1E LTR MaLR -59 300 146 3 655 241 184 0 0 chr6 9259713 9259751 -140257286 - ORR1E LTR MaLR -318 41 4 3 655 580 233 112 11 chr6 9259751 9259920 -140257117 - ORR1E-int LTR MaLR -50 1530 1177 3 655 4577 115 0 29 chr6 9259920 9260612 -140256425 - L1_Mus2 LINE L1 0 6566 5895 3 655 7611 59 7 0 chr6 9260635 9262250 -140254787 - L1Md_F2 LINE L1 -1 6581 4953 3 655 563 204 59 47 chr6 9262272 9262442 -140254595 - RLTRETN_Mm LTR ERVK 0 322 151 3 655 4852 69 0 0 chr6 9262442 9263105 -140253932 + L1_Mm LINE L1 4293 4955 -928 3 655 478 308 10 44 chr6 9263326 9263530 -140253507 + B3A SINE B2 1 197 -1 3 655 246 220 0 0 chr6 9263530 9263589 -140253448 + GA-rich Low_complexity Low_complexity 3 61 0 3 655 601 69 19 19 chr6 9263650 9263754 -140253283 + (CAGAGA)n Simple_repeat Simple_repeat 2 105 0 3 655 269 337 174 17 chr6 9263757 9263929 -140253108 - LTR52 LTR ERVL -179 242 44 3 655 47 67 0 0 chr6 9264380 9264469 -140252568 + AT_rich Low_complexity Low_complexity 1 89 0 3 655 27 0 0 0 chr6 9264534 9264561 -140252476 + AT_rich Low_complexity Low_complexity 1 27 0 3 655 932 139 17 6 chr6 9264603 9264776 -140252261 + L1_Mus3 LINE L1 6462 6636 -2 3 655 1302 175 9 9 chr6 9266036 9266261 -140250776 - URR1A DNA MER1_type 0 226 2 3 655 234 0 0 0 chr6 9266515 9266541 -140250496 + (CATAT)n Simple_repeat Simple_repeat 2 27 0 3 655 2083 131 3 58 chr6 9266680 9267028 -140250009 - ORR1A4 LTR MaLR 0 329 1 3 655 465 19 0 0 chr6 9267267 9267321 -140249716 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 655 411 21 0 0 chr6 9267321 9267368 -140249669 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 655 21 0 0 0 chr6 9267400 9267421 -140249616 + AT_rich Low_complexity Low_complexity 1 21 0 3 655 3639 72 13 2 chr6 9267421 9267898 -140249139 - L1_Mus1 LINE L1 -1 6566 6085 3 655 456 304 63 47 chr6 9268347 9268537 -140248500 - B3A SINE B2 -1 197 5 3 655 1694 243 107 13 chr6 9269440 9269906 -140247131 + Lx6 LINE L1 6930 7439 -21 3 655 326 100 0 0 chr6 9269952 9270002 -140247035 + L1VL1 LINE L1 24 73 -6349 3 655 29513 114 9 19 chr6 9270003 9271124 -140245913 + L1Md_F2 LINE L1 480 1598 -4285 3 655 2526 128 15 8 chr6 9271124 9271524 -140245513 + RLTR9D LTR ERVK 1 403 0 3 655 29513 80 10 10 chr6 9271524 9275520 -140241517 + L1Md_F2 LINE L1 1599 5586 -297 3 655 7487 71 1 17 chr6 9275521 9276530 -140240507 + L1Md_F2 LINE L1 5588 6580 -2 3 655 326 281 88 34 chr6 9277408 9277586 -140239451 - LTR16C LTR ERVL -1 537 337 3 655 229 245 154 19 chr6 9277753 9277857 -140239180 - Lx7 LINE L1 -4 7692 7575 3 655 23 33 0 0 chr6 9277873 9277903 -140239134 + AT_rich Low_complexity Low_complexity 1 30 0 3 655 22 35 0 0 chr6 9278760 9278789 -140238248 + AT_rich Low_complexity Low_complexity 1 29 0 3 655 2108 214 102 29 chr6 9279648 9280110 -140236927 + Lx2B LINE L1 6286 6777 -223 3 655 2241 117 155 7 chr6 9280110 9280524 -140236513 + IAPLTR2_Mm LTR ERVK 1 475 0 3 655 2108 214 102 29 chr6 9280524 9280649 -140236388 + Lx2B LINE L1 6778 6916 -84 3 655 499 317 48 82 chr6 9280952 9281244 -140235793 - Charlie8 DNA MER1_type -1994 434 153 3 655 251 47 0 65 chr6 9282727 9282773 -140234264 + (T)n Simple_repeat Simple_repeat 1 43 0 3 655 1050 84 28 0 chr6 9282773 9282915 -140234122 - B1_Mus2 SINE Alu 0 147 2 3 655 309 232 62 21 chr6 9283101 9283198 -140233839 + MER58B DNA MER1_type 61 161 -180 3 655 5589 147 9 0 chr6 9283277 9284381 -140232656 - Lx LINE L1 -637 5999 4888 3 655 3753 125 52 25 chr6 9284381 9285029 -140232008 + Lx LINE L1 5986 6651 -3 3 655 287 412 14 0 chr6 9285347 9285495 -140231542 + MER58B DNA MER1_type 191 340 -1 3 655 285 354 81 37 chr6 9286937 9287233 -140229804 - L1_Mur3 LINE L1 -7021 691 383 3 655 3783 199 23 44 chr6 9287240 9287857 -140229180 + Lx7 LINE L1 6849 7457 -239 3 655 536 60 0 23 chr6 9287857 9287943 -140229094 + (TCTCTG)n Simple_repeat Simple_repeat 2 85 0 3 655 3783 199 23 44 chr6 9287943 9288191 -140228846 + Lx7 LINE L1 7458 7695 -1 3 655 7877 87 7 47 chr6 9289006 9290706 -140226331 - L1Md_F2 LINE L1 -2 6580 5022 3 655 11257 75 0 0 chr6 9290671 9292167 -140224870 + L1Md_F2 LINE L1 3538 5033 -850 3 655 852 271 79 0 chr6 9292232 9292446 -140224591 + MTD LTR MaLR 7 237 -182 3 655 970 83 0 0 chr6 9293193 9293325 -140223712 + B1_Mus2 SINE Alu 15 146 -1 3 655 341 326 10 0 chr6 9293439 9293535 -140223502 + B1F1 SINE Alu 8 104 -16 3 655 388 310 29 6 chr6 9293560 9293735 -140223302 + L1MA4A LINE L1 5751 5929 -374 3 655 291 271 31 32 chr6 9293920 9294050 -140222987 - L1M4 LINE L1 -511 5651 5519 3 655 625 335 95 24 chr6 9294211 9294505 -140222532 - Lx4A LINE L1 -11 7047 6733 3 655 210 118 0 0 chr6 9294512 9294546 -140222491 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 655 575 283 0 0 chr6 9294546 9294689 -140222348 + Lx6 LINE L1 6765 6886 -574 3 655 3201 91 28 15 chr6 9294690 9295157 -140221880 - RMER16 LTR ERVK -1 532 60 3 655 300 279 24 104 chr6 9295433 9295597 -140221440 - L1MD LINE L1 -1113 5033 4883 3 655 21 0 0 0 chr6 9295976 9295997 -140221040 + AT_rich Low_complexity Low_complexity 1 21 0 3 655 417 254 72 6 chr6 9296120 9296286 -140220751 - L1M4 LINE L1 -2325 3821 3645 3 655 25 0 0 0 chr6 9296621 9296646 -140220391 + AT_rich Low_complexity Low_complexity 1 25 0 3 655 242 250 0 55 chr6 9296986 9297041 -140219996 + ID4 SINE ID 2 53 -30 3 655 31 0 0 0 chr6 9297947 9297978 -140219059 + AT_rich Low_complexity Low_complexity 1 31 0 3 655 825 329 28 54 chr6 9298188 9298541 -140218496 + MLT2D LTR ERVL 64 407 -7 3 655 899 337 54 5 chr6 9299716 9300089 -140216948 - MLT2B1 LTR ERVL -129 391 1 3 655 683 24 12 0 chr6 9300683 9300768 -140216269 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 655 452 130 11 0 chr6 9302841 9302933 -140214104 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 655 440 316 19 26 chr6 9302936 9303092 -140213945 - RSINE1 SINE B4 0 165 11 3 655 733 255 0 57 chr6 9304268 9304426 -140212611 - B1_Mur2 SINE Alu 0 149 1 3 655 213 65 0 0 chr6 9305194 9305225 -140211812 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 3 655 21 71 0 0 chr6 9305416 9305458 -140211579 + AT_rich Low_complexity Low_complexity 1 42 0 3 81 1181 236 143 15 chr6 9305772 9306184 -140210853 - Lx9 LINE L1 -1 7643 7179 3 656 360 0 0 0 chr6 9306272 9306312 -140210725 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 656 2437 218 43 57 chr6 9306400 9306672 -140210365 - RMER15 LTR ERVL 0 575 299 3 656 3052 72 0 26 chr6 9306672 9307101 -140209936 + L1Md_F2 LINE L1 6164 6581 -1 3 656 2437 218 43 57 chr6 9307101 9307411 -140209626 - RMER15 LTR ERVL -277 298 1 3 656 669 25 0 0 chr6 9307534 9307613 -140209424 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 656 396 291 35 28 chr6 9307625 9307770 -140209267 - RSINE1 SINE B4 -19 146 1 3 656 1385 250 76 130 chr6 9309564 9309686 -140207351 - Lx7 LINE L1 0 7696 7574 3 656 249 33 0 0 chr6 9309686 9309716 -140207321 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 656 1385 250 76 130 chr6 9309716 9309916 -140207121 - Lx7 LINE L1 -123 7573 7382 3 656 534 31 0 0 chr6 9309916 9309980 -140207057 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 656 1385 250 76 130 chr6 9309980 9310368 -140206669 - Lx7 LINE L1 -315 7381 7046 3 656 1501 97 5 22 chr6 9310368 9310590 -140206447 + L1_Mus1 LINE L1 6344 6561 -6 3 656 572 0 0 14 chr6 9310596 9310665 -140206372 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 3 656 1385 250 76 130 chr6 9310665 9310834 -140206203 - Lx7 LINE L1 -657 7039 6864 3 656 567 0 0 0 chr6 9310834 9310897 -140206140 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 656 1385 250 76 130 chr6 9310897 9310973 -140206064 - Lx7 LINE L1 -833 6863 6787 3 656 365 326 39 0 chr6 9311748 9311877 -140205160 + B1F SINE Alu 12 145 -4 3 656 1155 71 0 0 chr6 9312382 9312536 -140204501 + (TCCC)n Simple_repeat Simple_repeat 4 157 0 3 656 760 211 13 26 chr6 9314444 9314595 -140202442 - B1_Mur2 SINE Alu 0 149 1 3 656 909 342 11 4 chr6 9314858 9315122 -140201915 + B4 SINE B4 2 267 -25 3 656 297 192 14 0 chr6 9315142 9315215 -140201822 - Lx9 LINE L1 -24 7620 7547 3 656 279 335 75 38 chr6 9315215 9315401 -140201636 + RMER12 LTR ERVK 745 937 -385 3 656 438 20 0 0 chr6 9315456 9315507 -140201530 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 656 278 294 47 38 chr6 9315692 9315798 -140201239 + PB1 SINE Alu 19 125 -2 3 656 842 88 0 8 chr6 9317461 9317587 -140199450 + (GA)n Simple_repeat Simple_repeat 2 126 0 3 656 909 194 121 10 chr6 9318255 9318453 -140198584 - URR1B DNA MER1_type -5 220 1 3 656 180 0 0 0 chr6 9318777 9318797 -140198240 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 656 7772 72 1 2 chr6 9319167 9320176 -140196861 + L1_Mus1 LINE L1 5581 6565 -2 3 656 377 141 0 0 chr6 9320365 9320429 -140196608 - MERVL_2A-int LTR ERVL -5693 68 5 3 656 1824 151 14 77 chr6 9320433 9320784 -140196253 - ORR1A4 LTR MaLR 0 329 1 3 656 513 297 16 0 chr6 9321865 9321993 -140195044 - ID_B1 SINE B4 -6 218 89 3 656 423 0 0 0 chr6 9325228 9325275 -140191762 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 656 306 0 0 0 chr6 9325275 9325308 -140191729 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 656 486 0 0 0 chr6 9325308 9325361 -140191676 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 656 330 309 45 18 chr6 9325375 9325487 -140191550 - RSINE1 SINE B4 -48 117 3 3 656 22 0 0 0 chr6 9329426 9329448 -140187589 + AT_rich Low_complexity Low_complexity 1 22 0 3 656 662 158 110 13 chr6 9329686 9329840 -140187197 - Lx3A LINE L1 0 6981 6813 3 656 275 289 198 35 chr6 9330253 9330425 -140186612 - MLT2B5 LTR ERVL -517 200 1 3 656 27 29 0 0 chr6 9330560 9330594 -140186443 + AT_rich Low_complexity Low_complexity 1 34 0 3 656 1400 87 0 0 chr6 9330664 9330848 -140186189 - L1_Mus3 LINE L1 -363 6275 6092 3 656 2522 96 11 0 chr6 9330848 9331214 -140185823 + L1_Mus3 LINE L1 6268 6637 -1 3 656 32 0 0 0 chr6 9331364 9331396 -140185641 + AT_rich Low_complexity Low_complexity 1 32 0 3 656 202 128 26 0 chr6 9331835 9331874 -140185163 + (TCTCTG)n Simple_repeat Simple_repeat 2 41 0 4 656 443 272 219 12 chr6 9331901 9332065 -140184972 - ID_B1 SINE B4 -22 202 5 4 656 3145 96 5 2 chr6 9333499 9333946 -140183091 + L1_Mus2 LINE L1 6119 6566 0 4 656 274 308 115 64 chr6 9334053 9334209 -140182828 + MLT1G1 LTR MaLR 373 536 -43 4 656 234 217 0 0 chr6 9335238 9335284 -140181753 + Lx6 LINE L1 6265 6310 -1150 4 656 261 128 0 0 chr6 9336215 9336262 -140180775 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 4 656 662 335 111 58 chr6 9336311 9336850 -140180187 + Lx8 LINE L1 6655 7222 -251 4 656 460 371 6 6 chr6 9336929 9337089 -140179948 + RSINE1 SINE B4 6 165 0 4 656 342 309 78 78 chr6 9337123 9337327 -140179710 + B3 SINE B2 9 212 -4 4 656 996 61 46 0 chr6 9337358 9337489 -140179548 + B1_Mm SINE Alu 1 137 -10 4 656 210 37 0 0 chr6 9337489 9337516 -140179521 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 656 709 49 10 10 chr6 9337521 9337624 -140179413 + (GAAA)n Simple_repeat Simple_repeat 3 105 0 4 656 222 128 0 0 chr6 9337986 9338025 -140179012 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 656 423 0 0 0 chr6 9338025 9338071 -140178966 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 656 584 296 103 57 chr6 9338567 9338954 -140178083 + L1MC1 LINE L1 1114 1518 -4990 4 656 355 284 31 31 chr6 9339211 9339309 -140177728 - RSINE1 SINE B4 0 165 68 4 656 866 295 53 33 chr6 9339352 9339801 -140177236 + L1MC1 LINE L1 5023 5480 -841 4 656 369 62 0 0 chr6 9340025 9340073 -140176964 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 4 656 6587 107 7 149 chr6 9340094 9340305 -140176732 + L1_Mus3 LINE L1 4728 4925 -958 4 656 3542 86 2 8 chr6 9340305 9340784 -140176253 - L1_Mus2 LINE L1 0 6566 6091 4 656 7524 100 6 92 chr6 9340784 9342209 -140174828 + L1_Mus3 LINE L1 4926 6174 -464 4 656 2842 45 22 73 chr6 9342209 9342618 -140174419 + RLTR10 LTR ERVK 1 388 -2 4 656 7524 91 5 11 chr6 9342618 9343082 -140173955 + L1_Mus3 LINE L1 6175 6632 -6 4 656 688 288 171 50 chr6 9343089 9343768 -140173269 + L1MC1 LINE L1 5717 6477 -31 4 656 546 16 0 0 chr6 9344305 9344368 -140172669 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 656 2892 261 72 50 chr6 9344517 9346073 -140170964 + RMER1A Other Other 1 912 -118 4 656 3879 66 24 24 chr6 9346079 9346622 -140170415 + L1Md_F2 LINE L1 6040 6582 0 4 656 427 63 0 0 chr6 9346622 9346685 -140170352 + MTB-int LTR MaLR 1036 1098 0 4 656 2591 58 9 3 chr6 9346685 9347029 -140170008 + MTB LTR MaLR 1 346 -54 4 656 250 184 207 0 chr6 9347060 9347147 -140169890 + RMER1B Other Other 962 1066 0 4 656 1810 230 16 52 chr6 9349129 9349573 -140167464 - Lx6 LINE L1 0 7460 7033 4 656 801 174 14 0 chr6 9350471 9350615 -140166422 + URR1A DNA MER1_type 81 226 0 4 656 323 288 72 67 chr6 9352139 9352470 -140164567 - L1MD2 LINE L1 -6 6236 5904 4 656 548 312 87 81 chr6 9352556 9352877 -140164160 - MLT1A LTR MaLR -51 323 1 4 656 324 343 73 0 chr6 9352888 9353066 -140163971 - L1MD2 LINE L1 -462 5897 5707 4 656 263 181 0 14 chr6 9353072 9353145 -140163892 + CT-rich Low_complexity Low_complexity 1 72 0 4 656 422 210 32 2 chr6 9353385 9353488 -140163549 - B1_Mur2 SINE Alu -1 148 1 4 656 289 254 71 8 chr6 9353497 9353624 -140163413 - L1MC LINE L1 -1110 5036 4902 4 656 2770 89 30 2 chr6 9354110 9354504 -140162533 - L1_Mus3 LINE L1 -14 6624 6220 4 656 230 183 92 51 chr6 9354572 9354670 -140162367 - L1M3 LINE L1 -1757 4383 4282 4 656 26 0 0 0 chr6 9357500 9357526 -140159511 + AT_rich Low_complexity Low_complexity 1 26 0 4 656 22 70 0 0 chr6 9358431 9358474 -140158563 + AT_rich Low_complexity Low_complexity 1 43 0 4 656 970 348 42 22 chr6 9358549 9358996 -140158041 - Lx8 LINE L1 -153 7320 6865 4 656 386 311 10 0 chr6 9359914 9360017 -140157020 - RSINE1 SINE B4 -31 134 31 4 656 5810 78 15 21 chr6 9360017 9360874 -140156163 - L1_Mus3 LINE L1 -249 6389 5537 4 656 1453 81 36 0 chr6 9360874 9361097 -140155940 + L1_Mus3 LINE L1 6404 6634 -4 4 656 21 57 0 0 chr6 9361199 9361234 -140155803 + AT_rich Low_complexity Low_complexity 1 35 0 4 656 180 0 0 0 chr6 9361311 9361331 -140155706 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 656 335 195 23 8 chr6 9361653 9361782 -140155255 + (TG)n Simple_repeat Simple_repeat 2 132 0 4 656 551 292 27 14 chr6 9363075 9363221 -140153816 - ID_B1 SINE B4 -73 151 4 4 656 3146 236 60 69 chr6 9364140 9364491 -140152546 + Lx6 LINE L1 6349 6717 -743 4 656 302 0 26 0 chr6 9364491 9364529 -140152508 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 4 656 3146 236 60 69 chr6 9364529 9365123 -140151914 + Lx6 LINE L1 6718 7285 -175 4 656 246 343 19 19 chr6 9365190 9365294 -140151743 + Lx7 LINE L1 7195 7298 -398 4 656 318 26 0 0 chr6 9365311 9365350 -140151687 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 656 39 38 0 0 chr6 9365534 9365587 -140151450 + AT_rich Low_complexity Low_complexity 1 53 0 4 656 475 218 8 0 chr6 9365624 9365748 -140151289 - Lx9 LINE L1 -1 7643 7519 4 656 198 0 0 0 chr6 9365748 9365770 -140151267 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 656 321 26 0 0 chr6 9365770 9365807 -140151230 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 656 689 268 70 74 chr6 9365856 9366154 -140150883 + Lx9 LINE L1 5660 5956 -1688 4 656 270 0 0 0 chr6 9366476 9366506 -140150531 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 656 370 304 93 5 chr6 9366997 9367212 -140149825 - L1MC LINE L1 -2334 3812 3579 4 656 207 0 0 0 chr6 9367359 9367382 -140149655 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 656 387 0 0 0 chr6 9367382 9367424 -140149613 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 656 667 221 46 0 chr6 9369547 9369678 -140147359 - B3 SINE B2 -6 210 74 4 656 2463 254 36 26 chr6 9369678 9370284 -140146753 + Lx6 LINE L1 6849 7460 0 4 656 309 279 33 178 chr6 9370284 9370498 -140146539 + L1MC3 LINE L1 6770 6955 -830 4 656 771 254 35 5 chr6 9370498 9370696 -140146341 + B3 SINE B2 3 206 -10 4 656 309 279 33 178 chr6 9370696 9370812 -140146225 + L1MC3 LINE L1 6956 7052 -733 4 656 270 0 0 0 chr6 9370887 9370917 -140146120 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 656 291 315 162 20 chr6 9371244 9371458 -140145579 + MLT2B3 LTR ERVL 184 485 -69 4 656 211 341 0 12 chr6 9371567 9371650 -140145387 + B3 SINE B2 1 82 -134 4 656 390 57 0 0 chr6 9372454 9372507 -140144530 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 656 616 288 0 0 chr6 9372524 9372656 -140144381 - B3A SINE B2 -62 136 5 4 656 189 0 0 0 chr6 9374307 9374328 -140142709 + (CAA)n Simple_repeat Simple_repeat 3 23 0 4 656 570 339 52 72 chr6 9374776 9375122 -140141915 + MLT1A1 LTR MaLR 11 392 -16 4 656 3799 245 73 12 chr6 9375591 9376537 -140140500 - Lx7 LINE L1 -341 7355 6352 4 656 861 213 91 17 chr6 9376530 9376817 -140140220 + Lx7 LINE L1 7370 7677 -19 4 656 199 0 65 0 chr6 9376828 9376859 -140140178 + (TAAAA)n Simple_repeat Simple_repeat 4 36 0 4 656 22 0 0 0 chr6 9377140 9377162 -140139875 + AT_rich Low_complexity Low_complexity 1 22 0 4 656 536 252 0 0 chr6 9377197 9377300 -140139737 - Lx5 LINE L1 -195 6855 6753 4 656 4270 155 36 85 chr6 9377301 9378220 -140138817 + RMER17A2 LTR ERVK 33 906 0 4 656 4615 209 96 98 chr6 9378220 9379751 -140137286 - Lx4B LINE L1 -403 6655 5024 4 656 2646 116 0 34 chr6 9379751 9380163 -140136874 - L1_Mus4 LINE L1 -6 6630 6233 4 656 4615 216 46 147 chr6 9380163 9380718 -140136319 - Lx4B LINE L1 -863 5023 4635 4 656 213 39 0 0 chr6 9380718 9380744 -140136293 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 656 4615 216 46 147 chr6 9380744 9380972 -140136065 - Lx4B LINE L1 -1252 4634 4395 4 656 38095 10 0 7 chr6 9380981 9386350 -140130687 + L1Md_A LINE L1 260 5586 -297 4 656 8828 11 1 0 chr6 9386350 9387345 -140129692 + L1Md_A LINE L1 5587 6582 0 4 656 4750 162 19 26 chr6 9387345 9387923 -140129114 - Lx4B LINE L1 -1486 4391 3823 4 656 5338 127 92 72 chr6 9387923 9388387 -140128650 + RLTR13D4 LTR ERVK 1 488 -545 4 656 297 0 0 0 chr6 9388387 9388420 -140128617 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 656 5338 127 92 72 chr6 9388420 9388968 -140128069 + RLTR13D4 LTR ERVK 489 1032 -1 4 656 5123 166 18 24 chr6 9388968 9389412 -140127625 - Lx4B LINE L1 -2055 3822 3376 4 656 1370 182 0 21 chr6 9389419 9389699 -140127338 - Lx4B LINE L1 -3095 2782 2509 4 656 1727 178 48 11 chr6 9389690 9390321 -140126716 - Lx4B LINE L1 -4327 1550 896 4 656 28 61 0 0 chr6 9391486 9391535 -140125502 + AT_rich Low_complexity Low_complexity 1 49 0 4 656 474 299 57 6 chr6 9391583 9391741 -140125296 + Lx8 LINE L1 6198 6363 -1110 4 656 1549 328 51 10 chr6 9391811 9392483 -140124554 + Lx8 LINE L1 6536 7234 -239 4 656 2123 275 29 71 chr6 9392499 9393328 -140123709 + Lx8 LINE L1 6347 7140 -333 4 656 23 0 0 0 chr6 9393504 9393527 -140123510 + AT_rich Low_complexity Low_complexity 1 23 0 4 656 510 326 94 21 chr6 9393958 9394149 -140122888 + MTE-int LTR MaLR 1132 1336 -244 4 656 510 46 0 0 chr6 9394482 9394547 -140122490 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 656 1358 269 29 9 chr6 9395773 9396118 -140120919 - Lx6 LINE L1 0 7460 7109 4 656 32921 76 1 16 chr6 9396533 9401654 -140115383 + L1Md_F2 LINE L1 545 5586 -297 4 656 7869 57 1 7 chr6 9401654 9402656 -140114381 + L1Md_F2 LINE L1 5587 6582 0 4 656 5415 234 77 16 chr6 9402740 9404478 -140112559 - Lx6 LINE L1 -346 7114 5284 4 656 13759 148 56 69 chr6 9404500 9408132 -140108905 - L1Md_F2 LINE L1 0 6582 3106 4 656 484 15 0 42 chr6 9408132 9408203 -140108834 + (CAAAC)n Simple_repeat Simple_repeat 2 69 0 4 656 13759 167 85 67 chr6 9408203 9410531 -140106506 - L1Md_F2 LINE L1 -2778 3105 633 4 656 22 0 0 0 chr6 9410540 9410562 -140106475 + AT_rich Low_complexity Low_complexity 1 22 0 4 656 2660 276 88 33 chr6 9410562 9411378 -140105659 - Lx6 LINE L1 -21 7439 6579 4 656 2752 205 11 52 chr6 9411432 9412147 -140104890 - Lx6 LINE L1 -608 5272 4587 4 656 228 241 0 18 chr6 9412165 9412220 -140104817 + ORR1A0 LTR MaLR 285 338 -8 4 656 4591 202 50 70 chr6 9412224 9412623 -140104414 - Lx6 LINE L1 -3365 2515 2086 4 656 213 94 0 0 chr6 9412623 9412655 -140104382 + (TTG)n Simple_repeat Simple_repeat 1 32 0 4 656 4591 202 50 70 chr6 9412655 9412689 -140104348 - Lx6 LINE L1 -3795 2085 2064 4 656 369 0 0 0 chr6 9412689 9412730 -140104307 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 656 4591 194 45 59 chr6 9412730 9413730 -140103307 - Lx6 LINE L1 -3817 2063 1107 4 656 222 62 0 0 chr6 9414770 9414802 -140102235 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 656 774 105 0 125 chr6 9414802 9414954 -140102083 - B1_Mus1 SINE Alu -13 135 3 4 656 386 195 11 0 chr6 9416472 9416559 -140100478 + CT-rich Low_complexity Low_complexity 2 89 0 4 656 402 289 103 5 chr6 9416736 9416931 -140100106 + L1M4 LINE L1 3479 3692 -2454 4 656 64 71 0 0 chr6 9417128 9417255 -140099782 + AT_rich Low_complexity Low_complexity 1 127 0 4 656 204 40 0 0 chr6 9417790 9417815 -140099222 + (T)n Simple_repeat Simple_repeat 1 25 0 4 656 615 327 64 64 chr6 9419095 9419534 -140097503 + IAPEY3-int LTR ERVK 2756 3418 -4262 4 656 4405 47 0 0 chr6 9419892 9420425 -140096612 - L1Md_F2 LINE L1 0 6582 6050 4 656 1339 79 6 0 chr6 9420956 9421134 -140095903 + L1_Mus1 LINE L1 6389 6567 0 5 656 340 327 26 30 chr6 9421570 9421803 -140095234 + L1M2 LINE L1 3985 4216 -1924 5 656 279 71 0 0 chr6 9421826 9421868 -140095169 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 656 336 48 0 0 chr6 9421868 9421910 -140095127 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 656 483 252 120 32 chr6 9421927 9422144 -140094893 + L1M2 LINE L1 4424 4659 -1484 5 656 1730 173 89 9 chr6 9422741 9423068 -140093969 - ORR1B1 LTR MaLR -1 393 41 5 656 222 228 52 17 chr6 9423650 9423708 -140093329 + PB1D7 SINE Alu 61 120 0 5 656 904 221 9 37 chr6 9423909 9424125 -140092912 - Lx9 LINE L1 -226 7418 7209 5 656 752 313 23 50 chr6 9424125 9424424 -140092613 + B4 SINE B4 2 292 0 5 656 243 203 0 0 chr6 9424424 9424488 -140092549 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 656 593 312 115 43 chr6 9424914 9425383 -140091654 + RMER5 LTR ERV1 1 503 -31 5 656 1158 65 0 17 chr6 9425600 9425772 -140091265 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 5 656 209 321 47 23 chr6 9425929 9426015 -140091022 + L2b LINE L2 3284 3371 -4 5 656 1437 79 9 73 chr6 9426906 9427138 -140089899 + L1_Mus2 LINE L1 6350 6566 0 5 656 268 286 26 0 chr6 9427251 9427328 -140089709 + CT-rich Low_complexity Low_complexity 6 84 0 5 656 447 321 189 25 chr6 9427451 9427774 -140089263 + MER88 LTR ERVL 3 378 -86 5 656 25 31 0 0 chr6 9427846 9427878 -140089159 + AT_rich Low_complexity Low_complexity 1 32 0 5 656 392 316 115 70 chr6 9427902 9428232 -140088805 - L1M5 LINE L1 -356 5817 5473 5 656 34 42 0 0 chr6 9428490 9428538 -140088499 + AT_rich Low_complexity Low_complexity 1 48 0 5 656 227 321 28 9 chr6 9428827 9428934 -140088103 - MLT1A1 LTR MaLR -298 110 2 5 656 5827 215 43 24 chr6 9429104 9430423 -140086614 - Lx5 LINE L1 -11 7039 5696 5 656 1733 198 86 4 chr6 9430429 9431145 -140085892 - L1_Mur2 LINE L1 -4103 1774 979 5 656 272 362 38 0 chr6 9432181 9432286 -140084751 + B1F1 SINE Alu 1 109 -40 5 656 2618 128 5 3 chr6 9433848 9434294 -140082743 + Lx4A LINE L1 5484 5936 -1122 5 656 613 179 0 0 chr6 9434291 9434408 -140082629 - L1_Mur1 LINE L1 -2770 3116 3000 5 656 2536 199 28 43 chr6 9434434 9434942 -140082095 - RMER20A LTR ERVK -4 512 13 5 656 3979 223 47 153 chr6 9434942 9435172 -140081865 - Lx3C LINE L1 -2902 2978 2753 5 656 1617 213 48 65 chr6 9435172 9435730 -140081307 + RLTR31_Mur LTR ERVK 1 549 -4 5 10 3979 223 47 153 chr6 9435730 9437296 -140079741 - Lx3C LINE L1 -3128 2752 1374 5 657 468 0 0 0 chr6 9437296 9437348 -140079689 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 5 657 3979 236 30 7 chr6 9437348 9438003 -140079034 - Lx3C LINE L1 -4507 1373 1353 5 657 8787 163 23 17 chr6 9438001 9439677 -140077360 - L1_Mur2 LINE L1 -101 5776 4092 5 657 3411 177 23 1 chr6 9439672 9440043 -140076994 - L1VL4 LINE L1 -1994 1565 1187 5 657 225 0 0 0 chr6 9440043 9440068 -140076969 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 657 3411 177 16 1 chr6 9440068 9440590 -140076447 - L1VL4 LINE L1 -2373 1186 656 5 657 204 125 0 0 chr6 9441223 9441255 -140075782 + (CTG)n Simple_repeat Simple_repeat 1 32 0 5 657 451 356 0 63 chr6 9441311 9441345 -140075692 + B3 SINE B2 4 27 -189 5 657 6855 69 0 4 chr6 9441345 9442244 -140074793 + L1Md_F2 LINE L1 5676 6570 -12 5 657 451 356 0 63 chr6 9442244 9442368 -140074669 + B3 SINE B2 28 151 -65 5 657 420 20 0 0 chr6 9442368 9442417 -140074620 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 657 510 17 0 0 chr6 9442417 9442475 -140074562 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 657 227 198 22 65 chr6 9442638 9442730 -140074307 - Lx8 LINE L1 -50 7423 7336 5 657 1103 70 19 0 chr6 9444285 9444441 -140072596 + (TCCCC)n Simple_repeat Simple_repeat 3 161 0 5 657 3211 154 63 16 chr6 9444453 9445068 -140071969 - Lx2 LINE L1 0 6997 6354 5 657 549 0 0 0 chr6 9445557 9445618 -140071419 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 657 267 31 0 0 chr6 9445618 9445649 -140071388 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 657 494 298 136 43 chr6 9445651 9445886 -140071151 - B4A SINE B4 -18 274 18 5 657 2908 299 70 46 chr6 9446472 9446847 -140070190 - Lx7 LINE L1 -328 7368 6989 5 657 3277 70 20 0 chr6 9446847 9447336 -140069701 + L1_Mus3 LINE L1 6163 6638 0 5 657 2908 299 70 46 chr6 9447336 9447720 -140069317 - Lx7 LINE L1 -708 6988 6622 5 657 1810 172 66 11 chr6 9447720 9448084 -140068953 + ORR1C2 LTR MaLR 1 384 0 5 657 2908 299 70 46 chr6 9448084 9448547 -140068490 - Lx7 LINE L1 -1075 6621 6115 5 657 429 20 0 0 chr6 9449705 9449755 -140067282 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 657 361 232 12 27 chr6 9450414 9450506 -140066531 + MTD LTR MaLR 15 104 -292 5 657 411 98 0 0 chr6 9450533 9450594 -140066443 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 5 657 997 324 24 0 chr6 9450598 9450894 -140066143 + MTD LTR MaLR 117 419 0 5 657 551 277 0 58 chr6 9451631 9451769 -140065268 - ID_B1 SINE B4 -7 217 88 5 657 361 320 140 27 chr6 9451824 9452116 -140064921 - L2 LINE L2 -1356 2063 1739 5 657 267 299 0 84 chr6 9452350 9452445 -140064592 + MLT1A1 LTR MaLR 273 359 -49 5 657 232 175 16 16 chr6 9453820 9453884 -140063153 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 5 657 228 67 0 0 chr6 9454415 9454445 -140062592 + (T)n Simple_repeat Simple_repeat 1 30 0 5 657 28 29 0 0 chr6 9455168 9455203 -140061834 + AT_rich Low_complexity Low_complexity 1 35 0 5 657 32932 84 18 5 chr6 9455206 9461175 -140055862 - L1Md_F2 LINE L1 0 6582 532 5 657 350 330 0 0 chr6 9461233 9461324 -140055713 - PB1D10 SINE Alu -9 108 18 5 657 7279 142 18 11 chr6 9461482 9462915 -140054122 + Lx3B LINE L1 5344 6782 -191 5 657 3802 124 81 42 chr6 9462915 9463652 -140053385 + RMER17A LTR ERVK 1 750 -1 5 657 1087 171 21 0 chr6 9463652 9463845 -140053192 + Lx3B LINE L1 6776 6972 -1 5 657 18496 163 96 6 chr6 9464104 9467965 -140049072 + L1VL1 LINE L1 390 4738 -1148 5 657 383 36 0 35 chr6 9467965 9468023 -140049014 + (CAA)n Simple_repeat Simple_repeat 2 57 0 5 657 18496 178 127 5 chr6 9468023 9469066 -140047971 + L1VL1 LINE L1 4739 5785 -101 5 657 189 0 0 0 chr6 9469069 9469090 -140047947 + (TTA)n Simple_repeat Simple_repeat 1 21 0 5 657 37142 60 4 8 chr6 9469090 9475012 -140042025 - L1Md_F3 LINE L1 -26 6561 561 5 657 542 209 19 51 chr6 9477640 9477796 -140039241 - Lx7 LINE L1 -4 7692 7542 5 657 3333 11 0 0 chr6 9477776 9478152 -140038885 + L1Md_A LINE L1 5211 5586 -297 5 657 8973 5 0 0 chr6 9478152 9479148 -140037889 + L1Md_A LINE L1 5587 6582 0 5 657 1112 68 7 0 chr6 9479165 9479311 -140037726 + B1_Mus1 SINE Alu 2 148 0 5 657 210 143 0 0 chr6 9479348 9479383 -140037654 + (CTA)n Simple_repeat Simple_repeat 1 35 0 5 657 469 297 11 77 chr6 9479389 9479468 -140037569 - Lx7 LINE L1 -181 7515 7447 5 657 252 0 0 0 chr6 9479468 9479496 -140037541 + (CAGC)n Simple_repeat Simple_repeat 1 28 0 5 657 561 15 0 0 chr6 9479496 9479562 -140037475 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 657 469 297 11 77 chr6 9479562 9479574 -140037463 - Lx7 LINE L1 -250 7446 7437 5 657 549 0 0 0 chr6 9479574 9479635 -140037402 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 657 469 297 11 77 chr6 9479635 9479826 -140037211 - Lx7 LINE L1 -260 7436 7252 5 657 194 0 39 0 chr6 9480003 9480029 -140037008 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 657 1663 192 78 12 chr6 9480060 9480382 -140036655 - ORR1B2 LTR MaLR -17 350 8 5 657 2588 81 19 0 chr6 9481015 9481375 -140035662 - Lx3_Mus LINE L1 -8 7001 6635 5 657 2232 87 13 22 chr6 9481375 9481693 -140035344 + Lx3_Mus LINE L1 6332 6646 -363 5 657 468 340 72 20 chr6 9481779 9481932 -140035105 + B3A SINE B2 8 168 -30 5 657 324 0 0 0 chr6 9481946 9481982 -140035055 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 657 227 360 10 0 chr6 9482822 9482922 -140034115 + CT-rich Low_complexity Low_complexity 2 102 0 5 657 334 304 73 34 chr6 9483955 9484159 -140032878 + MIRc SINE MIR 40 251 -17 5 657 437 285 29 13 chr6 9486284 9486493 -140030544 + Lx7 LINE L1 5752 5958 -1515 5 657 727 336 63 75 chr6 9486522 9486890 -140030147 - Lx8 LINE L1 -705 6768 6396 5 657 2634 80 38 8 chr6 9486890 9487255 -140029782 - L1Md_F2 LINE L1 -12 6570 6195 5 657 727 336 63 75 chr6 9487255 9487471 -140029566 - Lx8 LINE L1 -1078 6395 6191 5 657 187 299 45 0 chr6 9487569 9487636 -140029401 - MIRc SINE MIR -110 158 89 5 657 21 0 0 0 chr6 9488074 9488095 -140028942 + AT_rich Low_complexity Low_complexity 1 21 0 5 657 761 315 64 73 chr6 9489143 9489551 -140027486 + MT2A LTR ERVL 55 458 -75 5 657 1653 231 43 14 chr6 9489579 9490023 -140027014 + Lx9 LINE L1 7181 7637 -7 5 657 21 0 0 0 chr6 9490085 9490106 -140026931 + AT_rich Low_complexity Low_complexity 1 21 0 5 657 267 254 0 16 chr6 9490409 9490473 -140026564 - PB1D10 SINE Alu 0 117 55 5 657 22 0 0 0 chr6 9491516 9491538 -140025499 + AT_rich Low_complexity Low_complexity 1 22 0 5 657 310 344 56 28 chr6 9491744 9491972 -140025065 + L1M5 LINE L1 4321 4556 -1590 5 657 1785 186 35 58 chr6 9491972 9492348 -140024689 - ORR1B2 LTR MaLR 0 367 1 5 657 310 344 56 28 chr6 9492348 9492406 -140024631 + L1M5 LINE L1 4557 4614 -1532 5 657 3033 152 93 32 chr6 9492443 9492747 -140024290 - RMER6C LTR ERVK 0 690 371 5 657 254 68 45 0 chr6 9492747 9492791 -140024246 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 5 657 3033 152 93 32 chr6 9492791 9493133 -140023904 - RMER6C LTR ERVK -320 370 5 5 657 503 315 87 47 chr6 9494515 9494768 -140022269 + MIRb SINE MIR 1 263 -5 5 657 21 82 0 0 chr6 9495796 9495845 -140021192 + AT_rich Low_complexity Low_complexity 1 49 0 5 657 1486 82 0 79 chr6 9495847 9496087 -140020950 - L1_Mus2 LINE L1 0 6566 6346 5 657 1752 63 34 0 chr6 9497510 9497747 -140019290 + L1_Mus1 LINE L1 6323 6567 0 5 657 4304 227 47 27 chr6 9497910 9498980 -140018057 + Lx9 LINE L1 6312 7402 -242 5 657 423 0 0 0 chr6 9498980 9499027 -140018010 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 657 492 133 43 17 chr6 9499029 9499144 -140017893 + Lx9 LINE L1 7519 7636 -8 5 657 630 280 103 102 chr6 9501833 9502374 -140014663 + L1MA5 LINE L1 5400 5908 -392 1 657 803 287 10 15 chr6 9503767 9503965 -140013072 - B3 SINE B2 -2 214 18 2 657 1112 294 53 39 chr6 9504050 9504486 -140012551 - Lx9 LINE L1 -285 7359 6918 3 657 1304 115 0 0 chr6 9504483 9504665 -140012372 - L1_Mus4 LINE L1 -428 6208 6027 4 657 2751 70 0 27 chr6 9504665 9505074 -140011963 + L1_Mus4 LINE L1 5548 5945 -691 4 657 342 349 0 9 chr6 9505172 9505282 -140011755 + PB1D10 SINE Alu 3 111 -6 5 657 876 69 0 0 chr6 9505459 9505575 -140011462 + (TATATG)n Simple_repeat Simple_repeat 6 121 0 6 657 1290 88 33 0 chr6 9507249 9507430 -140009607 + B2_Mm2 SINE B2 1 187 -8 7 657 24 0 0 0 chr6 9507512 9507536 -140009501 + AT_rich Low_complexity Low_complexity 1 24 0 8 657 525 32 0 0 chr6 9507591 9507654 -140009383 + (TC)n Simple_repeat Simple_repeat 2 64 0 9 657 342 0 0 0 chr6 9507654 9507691 -140009346 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 657 519 324 7 21 chr6 9507701 9507846 -140009191 - B3A SINE B2 -55 143 1 1 657 505 318 34 11 chr6 9508143 9508318 -140008719 - B3A SINE B2 -16 182 4 1 657 2431 112 20 38 chr6 9508577 9508968 -140008069 + L1_Mus3 LINE L1 6248 6631 -7 1 657 26 0 0 0 chr6 9508968 9508994 -140008043 + AT_rich Low_complexity Low_complexity 1 26 0 1 657 1360 116 51 13 chr6 9509176 9509412 -140007625 - L1_Mus3 LINE L1 0 6638 6394 1 657 2342 97 59 0 chr6 9509416 9509757 -140007280 + L1_Mus3 LINE L1 5975 6335 -231 1 657 696 285 89 14 chr6 9510036 9510531 -140006506 - L1M3c LINE L1 -4663 2186 1669 1 657 256 271 106 0 chr6 9510766 9510851 -140006186 + MLT1A1 LTR MaLR 299 392 -16 1 657 269 276 81 0 chr6 9511439 9511526 -140005511 - MLT1A1 LTR MaLR -16 392 299 1 657 991 315 95 29 chr6 9511890 9512544 -140004493 + L1MC1 LINE L1 5633 6329 -4 1 657 25 0 0 0 chr6 9513255 9513280 -140003757 + AT_rich Low_complexity Low_complexity 1 25 0 2 657 180 100 0 32 chr6 9514995 9515026 -140002011 + L2 LINE L2 2428 2457 -962 2 657 224 174 0 21 chr6 9515919 9515966 -140001071 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2 657 340 291 68 68 chr6 9516138 9516359 -140000678 - L1MA8 LINE L1 -284 6007 5787 2 657 4694 147 52 3 chr6 9517424 9518208 -139998829 - Lx2 LINE L1 0 6997 6175 2 657 181 212 0 0 chr6 9518545 9518578 -139998459 + L2a LINE L2 3386 3418 -8 2 657 189 0 0 0 chr6 9518631 9518652 -139998385 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 657 404 99 14 0 chr6 9518906 9518977 -139998060 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 657 216 200 0 0 chr6 9519584 9519629 -139997408 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 657 275 172 47 0 chr6 9519629 9519693 -139997344 - B2_Mm1a SINE B2 -2 191 125 2 657 5774 50 15 20 chr6 9520087 9520837 -139996200 - L1Md_F2 LINE L1 -27 6555 5810 3 657 222 118 0 0 chr6 9520846 9520880 -139996157 + (A)n Simple_repeat Simple_repeat 1 34 0 3 657 254 164 18 0 chr6 9522517 9522572 -139994465 + (TGG)n Simple_repeat Simple_repeat 3 58 0 3 657 4848 68 7 0 chr6 9524167 9524787 -139992250 - L1_Mus1 LINE L1 -2 6565 5942 3 657 1550 209 45 50 chr6 9524856 9525214 -139991823 + ORR1D1 LTR MaLR 9 364 -10 3 657 1083 80 0 0 chr6 9525513 9525664 -139991373 + (CA)n Simple_repeat Simple_repeat 2 152 0 3 657 279 289 72 109 chr6 9525896 9526003 -139991034 + MT2B2 LTR ERVL 57 155 -429 3 657 500 299 8 12 chr6 9526003 9526148 -139990889 + B1_Mur1 SINE Alu 2 141 -6 3 657 396 161 0 0 chr6 9526150 9526231 -139990806 + GA-rich Low_complexity Low_complexity 3 83 0 3 657 1163 102 6 0 chr6 9526231 9526408 -139990629 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 657 23 0 0 0 chr6 9526909 9526932 -139990105 + AT_rich Low_complexity Low_complexity 1 23 0 4 657 959 274 26 8 chr6 9527143 9527408 -139989629 + Lx9 LINE L1 6977 7246 -398 4 657 506 227 15 92 chr6 9527410 9527541 -139989496 + MTC LTR MaLR 166 286 -135 4 657 702 236 102 0 chr6 9527551 9527708 -139989329 - MTC LTR MaLR -248 173 1 4 657 654 118 0 0 chr6 9528206 9528308 -139988729 + (TC)n Simple_repeat Simple_repeat 1 102 0 4 657 234 0 0 0 chr6 9528312 9528338 -139988699 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 657 546 284 59 33 chr6 9528343 9528496 -139988541 - B3A SINE B2 -41 157 1 4 657 634 261 96 19 chr6 9528755 9529015 -139988022 - MTD LTR MaLR -8 411 1 4 657 912 110 29 0 chr6 9529189 9529325 -139987712 + B1_Mur1 SINE Alu 2 141 -8 4 657 218 279 0 0 chr6 9529755 9529823 -139987214 + T-rich Low_complexity Low_complexity 1 68 0 4 657 361 232 195 54 chr6 9529828 9530033 -139987004 - Lx9 LINE L1 -7 7637 7404 4 657 238 220 0 64 chr6 9530023 9530117 -139986920 + Lx9 LINE L1 7241 7394 -250 4 657 40330 16 1 6 chr6 9530539 9536733 -139980304 - L1Md_A LINE L1 -2 6580 422 5 657 275 270 131 65 chr6 9536765 9536872 -139980165 + PB1D10 SINE Alu 1 114 -3 5 657 216 352 0 0 chr6 9537500 9537571 -139979466 + L2a LINE L2 3353 3423 -3 5 657 838 186 21 99 chr6 9538082 9538315 -139978722 + MYSERV16_I-int LTR ERVK 719 933 -1393 5 657 5765 152 54 39 chr6 9538312 9539551 -139977486 + MYSERV16_I-int LTR ERVK 1062 2319 -7 5 657 1564 216 26 50 chr6 9539552 9539932 -139977105 + RLTR20C LTR ERVK 1 371 -163 5 657 3394 33 0 0 chr6 9539932 9540327 -139976710 - L1Md_F2 LINE L1 -376 6206 5812 5 657 2799 54 0 3 chr6 9540327 9540682 -139976355 + L1Md_F2 LINE L1 6217 6570 -12 5 657 908 199 38 11 chr6 9540685 9540783 -139976254 + RLTR20C LTR ERVK 344 441 -93 5 657 486 0 0 0 chr6 9540783 9540837 -139976200 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 657 908 199 38 11 chr6 9540837 9540921 -139976116 + RLTR20C LTR ERVK 442 530 -4 5 657 1488 219 12 44 chr6 9541153 9541553 -139975484 + MT2B LTR ERVL 1 543 -58 5 657 489 17 0 0 chr6 9541553 9541611 -139975426 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 657 1488 243 17 57 chr6 9541611 9541671 -139975366 + MT2B LTR ERVL 544 587 -14 5 657 685 303 0 66 chr6 9541736 9541948 -139975089 + B3A SINE B2 1 198 0 5 657 2273 86 3 6 chr6 9541953 9542268 -139974769 + L1Md_F2 LINE L1 6269 6582 0 5 657 207 0 0 0 chr6 9542308 9542331 -139974706 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 657 240 341 34 11 chr6 9542381 9542470 -139974567 - B4A SINE B4 -19 273 183 6 657 825 102 215 13 chr6 9542646 9542795 -139974242 + B2_Mm2 SINE B2 1 179 -16 6 657 351 0 0 0 chr6 9543302 9543341 -139973696 + (A)n Simple_repeat Simple_repeat 1 39 0 6 657 775 327 94 36 chr6 9544840 9545343 -139971694 - Lx8 LINE L1 -185 7288 6747 6 657 220 122 20 39 chr6 9545834 9545885 -139971152 + T-rich Low_complexity Low_complexity 4 53 0 6 657 294 41 0 0 chr6 9545925 9545974 -139971063 - L1_Mus4 LINE L1 -1 6635 6587 6 657 2601 195 162 55 chr6 9545978 9546275 -139970762 - RMER17D LTR ERVK -16 873 559 6 657 954 110 0 0 chr6 9546275 9546421 -139970616 + L1_Mus1 LINE L1 6422 6567 0 6 657 2601 195 162 55 chr6 9546421 9546563 -139970474 - RMER17D LTR ERVK -331 558 445 6 657 414 0 0 0 chr6 9546563 9546609 -139970428 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 657 2601 195 162 55 chr6 9546609 9546703 -139970334 - RMER17D LTR ERVK -445 444 300 6 657 822 39 0 0 chr6 9546703 9546805 -139970232 + (GGAGA)n Simple_repeat Simple_repeat 2 103 0 7 657 2601 195 162 55 chr6 9546805 9547057 -139969980 - RMER17D LTR ERVK -590 299 1 6 657 7137 107 4 9 chr6 9547057 9548557 -139968480 - L1_Mus3 LINE L1 -44 6594 5105 7 657 252 0 0 0 chr6 9548799 9548827 -139968210 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 7 657 26 30 0 0 chr6 9548849 9548882 -139968155 + AT_rich Low_complexity Low_complexity 1 33 0 7 657 22 70 0 0 chr6 9549080 9549123 -139967914 + AT_rich Low_complexity Low_complexity 1 43 0 7 657 21 0 0 0 chr6 9549251 9549272 -139967765 + AT_rich Low_complexity Low_complexity 1 21 0 7 657 387 0 0 0 chr6 9549297 9549340 -139967697 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 7 657 4610 144 32 13 chr6 9549728 9550513 -139966524 + Lx2 LINE L1 6191 6990 -7 7 657 270 0 0 0 chr6 9550514 9550544 -139966493 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 657 7779 199 72 22 chr6 9550545 9552733 -139964304 + Lx5 LINE L1 1024 3327 -2550 7 657 3159 175 40 31 chr6 9552717 9553259 -139963778 + Lx5 LINE L1 3908 4455 -1422 7 657 1216 61 0 0 chr6 9553259 9553407 -139963630 - B1_Mus1 SINE Alu 0 148 1 8 657 3159 175 40 31 chr6 9553407 9553565 -139963472 + Lx5 LINE L1 4456 4614 -1263 7 657 31433 41 0 0 chr6 9553654 9559189 -139957848 + L1Md_T LINE L1 1 5589 -297 8 657 8938 8 0 0 chr6 9559190 9560185 -139956852 + L1Md_T LINE L1 5591 6585 0 8 657 5171 188 117 3 chr6 9560188 9560390 -139956647 + Lx5 LINE L1 4596 4796 -1081 7 657 519 17 0 0 chr6 9560390 9560450 -139956587 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 657 5171 205 95 42 chr6 9560450 9562208 -139954829 + Lx5 LINE L1 4797 6668 -382 7 657 808 83 42 0 chr6 9562251 9562395 -139954642 - RMER17B LTR ERVK -495 463 314 8 657 25062 82 79 4 chr6 9562549 9563751 -139953286 - L1Md_F2 LINE L1 0 6582 5387 8 657 1747 203 10 0 chr6 9563751 9564057 -139952980 - RLTR27 LTR ERVK 0 309 1 8 82 25062 86 162 2 chr6 9564057 9568277 -139948760 - L1Md_F2 LINE L1 -497 5386 392 8 658 267 347 78 58 chr6 9568292 9568372 -139948665 - Lx9 LINE L1 -52 7421 7337 8 658 375 23 0 0 chr6 9568372 9568416 -139948621 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 658 651 321 47 34 chr6 9568416 9568802 -139948235 - Lx9 LINE L1 -178 7466 6966 8 658 249 284 49 0 chr6 9570808 9570889 -139946148 + ORR1E LTR MaLR 1 85 -274 8 658 438 0 0 0 chr6 9571264 9571317 -139945720 + B2_Mm2 SINE B2 2 54 -141 8 658 3359 57 83 11 chr6 9571317 9571775 -139945262 + L1Md_F2 LINE L1 6079 6569 -13 9 658 370 314 57 0 chr6 9572257 9572381 -139944656 - RSINE1 SINE B4 -33 132 2 9 658 583 260 7 7 chr6 9572407 9572554 -139944483 - B1_Mm SINE Alu 0 147 1 9 658 416 278 167 34 chr6 9572639 9573197 -139943840 - L1M2 LINE L1 -2260 3883 3252 9 658 556 336 112 45 chr6 9573287 9573751 -139943286 + RLTR40 LTR ERVK 90 584 -233 9 658 288 266 17 68 chr6 9573834 9574011 -139943026 - L1M2 LINE L1 -2926 3217 3044 9 658 3059 23 0 0 chr6 9574011 9574357 -139942680 + ORR1A0 LTR MaLR 1 346 0 9 658 288 266 17 68 chr6 9574357 9574413 -139942624 - L1M2 LINE L1 -3100 3043 2996 9 658 470 17 0 17 chr6 9574497 9574557 -139942480 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 9 658 1007 263 125 0 chr6 9574766 9575145 -139941892 - Lx5 LINE L1 -566 6894 6455 9 658 970 286 9 51 chr6 9575133 9575468 -139941569 + Lx6 LINE L1 7094 7414 -46 9 658 630 39 0 0 chr6 9575470 9575547 -139941490 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 9 658 22 0 0 0 chr6 9576374 9576396 -139940641 + AT_rich Low_complexity Low_complexity 1 22 0 1 658 3057 101 55 61 chr6 9576419 9577161 -139939876 + Lx3_Mus LINE L1 5718 6579 -430 1 658 3077 35 0 0 chr6 9577163 9577533 -139939504 + L1Md_T LINE L1 6213 6582 0 1 658 2124 151 15 76 chr6 9577540 9577998 -139939039 + Lx3A LINE L1 6552 6981 0 1 658 370 37 0 18 chr6 9577998 9578047 -139938990 + Lx3A LINE L1 5913 5961 -1020 1 658 611 161 0 8 chr6 9578347 9578407 -139938630 + polypyrimidine Low_complexity Low_complexity 59 118 0 1 658 1215 97 0 0 chr6 9578407 9578583 -139938454 + (TCTCCC)n Simple_repeat Simple_repeat 3 178 0 1 658 611 161 0 8 chr6 9578583 9578641 -139938396 + polypyrimidine Low_complexity Low_complexity 1 58 0 1 658 310 398 79 46 chr6 9578881 9579184 -139937853 - L2b LINE L2 -1 3374 3062 1 658 27 0 0 0 chr6 9579623 9579650 -139937387 + AT_rich Low_complexity Low_complexity 1 27 0 1 658 308 314 0 20 chr6 9579683 9579784 -139937253 + ID4 SINE ID 4 102 -50 1 658 24 32 0 0 chr6 9579950 9579981 -139937056 + AT_rich Low_complexity Low_complexity 1 31 0 1 658 1089 258 52 57 chr6 9580123 9580489 -139936548 + ORR1D1 LTR MaLR 2 365 -9 1 658 306 359 97 12 chr6 9580670 9580918 -139936119 - L1MB7 LINE L1 -83 6599 6331 1 658 358 258 92 167 chr6 9581070 9581298 -139935739 - B3 SINE B2 -5 211 1 1 658 423 0 0 0 chr6 9581318 9581365 -139935672 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 658 225 0 0 0 chr6 9581364 9581389 -139935648 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 658 304 364 21 14 chr6 9581393 9581538 -139935499 - L1MB7 LINE L1 -505 6177 6032 1 658 3421 99 82 4 chr6 9581794 9582303 -139934734 + L1_Mus4 LINE L1 6088 6636 0 1 658 323 339 94 70 chr6 9582518 9582601 -139934436 - L1MB7 LINE L1 -1124 5520 5435 1 658 1343 40 0 22 chr6 9582601 9582780 -139934257 - L1Md_F2 LINE L1 -15 6567 6393 1 658 323 339 94 70 chr6 9582780 9583153 -139933884 - L1MB7 LINE L1 -1210 5434 5053 1 658 29 0 0 0 chr6 9583295 9583324 -139933713 + AT_rich Low_complexity Low_complexity 1 29 0 1 658 22 0 0 0 chr6 9583549 9583571 -139933466 + AT_rich Low_complexity Low_complexity 1 22 0 1 658 243 219 260 0 chr6 9583571 9583667 -139933370 - Lx5 LINE L1 -1 7049 6929 1 658 4124 243 55 23 chr6 9583667 9584758 -139932279 - Lx5 LINE L1 -50 7000 5875 1 658 295 77 0 0 chr6 9584754 9584793 -139932244 + Lx5 LINE L1 5824 5862 -1188 1 658 5662 142 61 24 chr6 9584936 9585980 -139931057 - RLTR25A LTR ERVK -20 1083 1 1 658 314 283 99 19 chr6 9586006 9586168 -139930869 - L1MB7 LINE L1 -2168 4476 4302 1 658 600 73 0 0 chr6 9586338 9586420 -139930617 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 658 1489 289 23 19 chr6 9586626 9587059 -139929978 - Lx6 LINE L1 -1 7459 7025 1 658 351 352 112 20 chr6 9587585 9587881 -139929156 - L1MB7 LINE L1 -5875 667 345 1 658 21 0 0 0 chr6 9588083 9588104 -139928933 + AT_rich Low_complexity Low_complexity 1 21 0 1 658 486 0 0 0 chr6 9589805 9589859 -139927178 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 658 306 0 0 0 chr6 9589859 9589892 -139927145 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 658 570 67 0 0 chr6 9590635 9590710 -139926327 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 658 431 315 20 7 chr6 9590902 9591052 -139925985 - Lx7 LINE L1 -600 7096 6945 1 658 518 299 41 4 chr6 9591064 9591347 -139925690 - L1_Mur3 LINE L1 -1625 4258 3963 1 658 466 288 30 57 chr6 9591352 9591684 -139925353 - L1M2 LINE L1 -2884 3259 2937 1 658 1181 291 84 53 chr6 9591879 9592827 -139924210 + L1_Mur3 LINE L1 3749 4726 -1154 1 658 995 340 13 8 chr6 9592830 9593206 -139923831 - Lx9 LINE L1 -733 6911 6534 1 658 2805 89 28 15 chr6 9593253 9593651 -139923386 - RLTR9D LTR ERVK 0 403 1 1 658 440 97 27 14 chr6 9593652 9593725 -139923312 - RLTR45-int LTR ERVK -2 7404 7331 1 658 2796 194 86 84 chr6 9593937 9595542 -139921495 - RLTR45-int LTR ERVK -1807 5437 2843 1 658 36228 60 4 6 chr6 9595542 9601073 -139915964 + L1Md_T LINE L1 102 5589 -297 1 658 7837 58 9 0 chr6 9601073 9602060 -139914977 + L1Md_T LINE L1 5590 6585 0 1 658 3549 243 90 93 chr6 9602082 9602721 -139914316 - ETnERV2-int LTR ERVK -3499 3907 3230 1 658 569 14 0 14 chr6 9602721 9602792 -139914245 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 1 658 5862 171 49 41 chr6 9602792 9604353 -139912684 - ETnERV2-int LTR ERVK -3958 3448 798 1 658 5713 70 23 8 chr6 9604353 9605127 -139911910 + L1Md_F2 LINE L1 5797 6582 0 1 658 3624 207 78 76 chr6 9605127 9606005 -139911032 - ETnERV2-int LTR ERVK -4047 797 3 1 658 2890 99 2 15 chr6 9606007 9606415 -139910622 - RLTR9D LTR ERVK 0 403 1 1 658 521 302 36 64 chr6 9606459 9606633 -139910404 + ORR1D1 LTR MaLR 1 176 -198 1 658 3491 192 39 3 chr6 9606633 9607324 -139909713 + RMER6D LTR ERVK 1 716 -4 1 658 521 302 36 64 chr6 9607324 9607368 -139909669 + ORR1D1 LTR MaLR 177 213 -161 1 658 240 35 0 0 chr6 9607417 9607446 -139909591 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 658 390 42 0 0 chr6 9607491 9607539 -139909498 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 658 431 237 0 7 chr6 9607571 9607707 -139909330 + (TA)n Simple_repeat Simple_repeat 2 136 0 1 658 424 203 0 13 chr6 9607898 9607973 -139909064 + Lx9 LINE L1 5841 5914 -1730 1 658 3301 208 104 46 chr6 9607973 9609121 -139907916 - RLTR25B LTR ERVK 0 1103 6 1 658 1082 107 6 0 chr6 9611082 9611259 -139905778 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 1 658 9804 55 1 1 chr6 9611490 9613434 -139903603 - L1Md_F2 LINE L1 -2 6580 4639 1 658 425 323 113 0 chr6 9613871 9614004 -139903033 + B3 SINE B2 1 148 -68 1 658 27 81 0 0 chr6 9614061 9614123 -139902914 + AT_rich Low_complexity Low_complexity 1 62 0 1 658 312 235 0 0 chr6 9614155 9614236 -139902801 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 658 495 0 0 0 chr6 9614243 9614298 -139902739 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 658 198 0 0 0 chr6 9614298 9614319 -139902718 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 658 2354 158 26 21 chr6 9614519 9614946 -139902091 - Lx3B LINE L1 0 6973 6545 1 658 341 305 64 109 chr6 9614960 9615250 -139901787 - RLTR11B LTR ERVK -168 273 1 1 658 241 210 32 0 chr6 9615704 9615766 -139901271 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 1 658 375 256 0 34 chr6 9617570 9617659 -139899378 + MER58B DNA MER1_type 247 332 -9 1 658 233 182 18 0 chr6 9618082 9618137 -139898900 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 658 474 358 83 42 chr6 9618144 9618409 -139898628 - B4A SINE B4 -4 288 13 1 658 397 214 0 35 chr6 9618472 9618559 -139898478 + Lx8 LINE L1 6733 6816 -657 1 658 262 206 0 16 chr6 9618569 9618633 -139898404 + CT-rich Low_complexity Low_complexity 2 64 0 1 658 673 350 96 20 chr6 9618648 9619053 -139897984 - Lx7 LINE L1 -401 7295 6860 1 658 210 143 0 0 chr6 9619460 9619495 -139897542 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 658 707 193 40 7 chr6 9619627 9619778 -139897259 - ORR1C1 LTR MaLR -25 353 198 1 658 513 202 28 0 chr6 9619778 9619887 -139897150 - Lx4B LINE L1 -376 6682 6571 1 658 481 217 0 94 chr6 9619888 9620005 -139897032 - ORR1C1-int LTR MaLR -1119 390 285 1 658 1713 209 40 11 chr6 9620015 9620315 -139896722 - Lx5 LINE L1 -2 7048 6742 1 658 402 39 0 0 chr6 9620315 9620367 -139896670 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 658 1713 209 40 11 chr6 9620367 9620419 -139896618 - Lx5 LINE L1 -309 6741 6687 1 658 425 122 33 22 chr6 9620820 9620912 -139896125 - L1Md_F2 LINE L1 -3 6579 6487 1 658 2276 62 0 10 chr6 9620912 9621203 -139895834 + L1Md_F2 LINE L1 6098 6385 -197 1 658 183 42 0 0 chr6 9621684 9621708 -139895329 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 658 332 94 0 19 chr6 9621708 9621762 -139895275 + (TATG)n Simple_repeat Simple_repeat 1 53 0 1 658 247 273 30 0 chr6 9622006 9622072 -139894965 + PB1D10 SINE Alu 42 109 -8 1 658 24 0 0 0 chr6 9623690 9623714 -139893323 + AT_rich Low_complexity Low_complexity 1 24 0 1 658 384 183 0 0 chr6 9623829 9623922 -139893115 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 658 1212 98 30 30 chr6 9624264 9624463 -139892574 + L1Md_F2 LINE L1 6384 6582 0 1 658 1094 201 128 36 chr6 9624660 9624964 -139892073 + IAPEY3_LTR LTR ERVK 1 332 0 1 658 230 184 136 11 chr6 9625212 9625300 -139891737 - Lx9 LINE L1 0 7644 7546 1 658 700 59 20 0 chr6 9625933 9626035 -139891002 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 658 3057 39 10 0 chr6 9626035 9626418 -139890619 + MTA_Mm LTR MaLR 8 394 -2 1 658 335 328 54 39 chr6 9626537 9626797 -139890240 - L1M2 LINE L1 -769 5374 5111 1 658 34356 79 7 8 chr6 9627742 9634053 -139882984 - L1Md_F2 LINE L1 -13 6569 267 1 658 195 100 0 0 chr6 9634087 9634117 -139882920 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 658 195 42 0 0 chr6 9634117 9634141 -139882896 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 658 180 0 0 0 chr6 9634269 9634289 -139882748 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 1 658 521 370 86 26 chr6 9634591 9635241 -139881796 - L1M3de LINE L1 -4774 1879 1191 1 658 307 302 30 105 chr6 9635296 9635496 -139881541 - L1M3de LINE L1 -5665 988 804 1 658 6256 182 41 24 chr6 9636217 9637497 -139879540 - Lx4B LINE L1 -5 7053 5753 1 658 312 70 0 0 chr6 9637711 9637754 -139879283 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 658 243 0 0 0 chr6 9637754 9637781 -139879256 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1 658 2569 128 41 5 chr6 9637888 9638305 -139878732 - Lx LINE L1 -6 6648 6217 1 658 183 80 0 0 chr6 9638400 9638425 -139878612 + (A)n Simple_repeat Simple_repeat 1 25 0 1 658 206 344 80 8 chr6 9638750 9638883 -139878154 - L2c LINE L2 -18 3408 3244 1 658 283 192 12 93 chr6 9639163 9639249 -139877788 + polypurine Low_complexity Low_complexity 6 84 0 1 658 450 282 126 33 chr6 9640967 9641150 -139875887 - MER67C LTR ERV1 -286 425 226 1 658 317 290 98 31 chr6 9641152 9641363 -139875674 + L1M4 LINE L1 4221 4457 -1689 1 658 282 247 34 80 chr6 9641440 9641528 -139875509 - Lx8 LINE L1 -2 7471 7388 1 658 3815 239 51 48 chr6 9641740 9643567 -139873470 + Lx6 LINE L1 4949 7100 -360 1 658 4044 196 70 19 chr6 9643572 9644049 -139872988 - RMER17B LTR ERVK -16 942 436 1 658 989 68 0 43 chr6 9644049 9644234 -139872803 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 1 658 4044 196 70 19 chr6 9644234 9644343 -139872694 - RMER17B LTR ERVK -523 435 319 1 658 482 0 17 0 chr6 9644343 9644401 -139872636 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 658 4044 196 70 19 chr6 9644401 9644704 -139872333 - RMER17B LTR ERVK -640 318 10 1 658 1284 263 50 8 chr6 9644705 9644927 -139872110 + Lx6 LINE L1 7086 7321 -139 1 658 288 0 0 0 chr6 9644927 9644959 -139872078 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 658 1284 263 50 8 chr6 9644959 9645096 -139871941 + Lx6 LINE L1 7322 7459 -1 1 658 31 44 0 0 chr6 9645127 9645172 -139871865 + AT_rich Low_complexity Low_complexity 1 45 0 2 658 1106 270 33 77 chr6 9645178 9645760 -139871277 - Lx7 LINE L1 -61 7635 7080 2 658 3419 242 59 14 chr6 9645759 9646879 -139870158 + L1_Mur3 LINE L1 1533 2702 -3178 2 658 1557 122 8 8 chr6 9646891 9647147 -139869890 - L1_Mur1 LINE L1 -507 5379 5124 2 658 28 0 0 0 chr6 9647172 9647200 -139869837 + AT_rich Low_complexity Low_complexity 1 28 0 2 658 32 0 0 0 chr6 9647276 9647308 -139869729 + AT_rich Low_complexity Low_complexity 1 32 0 2 658 315 0 0 0 chr6 9650403 9650438 -139866599 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 658 21 36 0 0 chr6 9651481 9651509 -139865528 + AT_rich Low_complexity Low_complexity 1 28 0 2 658 554 0 15 0 chr6 9651643 9651709 -139865328 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 658 1581 201 92 96 chr6 9652075 9652619 -139864418 - Lx9 LINE L1 -19 7625 7084 2 658 401 184 156 0 chr6 9652619 9652728 -139864309 + Lx9 LINE L1 6899 7024 -620 2 658 42 65 0 0 chr6 9653385 9653462 -139863575 + AT_rich Low_complexity Low_complexity 1 77 0 2 658 373 278 107 79 chr6 9653968 9654069 -139862968 + Lx8 LINE L1 6896 7014 -459 2 658 261 0 0 0 chr6 9654069 9654098 -139862939 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 658 373 278 107 79 chr6 9654098 9654211 -139862826 + Lx8 LINE L1 7015 7115 -358 2 658 1142 121 139 10 chr6 9654261 9654283 -139862754 - Lx2 LINE L1 -329 6668 6645 2 658 1329 129 0 0 chr6 9654283 9654485 -139862552 - Lx2 LINE L1 -19 6978 6777 2 658 1142 121 139 10 chr6 9654485 9654663 -139862374 - Lx2 LINE L1 -353 6644 6442 2 658 5001 151 30 2 chr6 9654666 9654908 -139862129 - L1_Mur2 LINE L1 -999 4878 4633 2 658 216 0 0 0 chr6 9654908 9654932 -139862105 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 658 5001 151 30 2 chr6 9654932 9655578 -139861459 - L1_Mur2 LINE L1 -1245 4632 3966 2 658 1378 223 64 53 chr6 9655640 9655985 -139861052 + ORR1C2 LTR MaLR 1 349 -29 2 658 641 76 11 0 chr6 9655985 9656077 -139860960 + (TC)n Simple_repeat Simple_repeat 2 94 0 2 658 1378 223 64 53 chr6 9656077 9656105 -139860932 + ORR1C2 LTR MaLR 350 377 -1 2 658 2084 237 89 42 chr6 9656105 9656699 -139860338 + ORR1C2-int LTR MaLR 1 622 -887 2 658 2356 208 18 9 chr6 9656712 9657145 -139859892 + ORR1C2-int LTR MaLR 817 1253 -256 2 658 951 241 30 114 chr6 9657145 9657547 -139859490 + RLTR9A LTR ERVK 1 368 0 2 658 1061 190 60 13 chr6 9657547 9657782 -139859255 + ORR1C2-int LTR MaLR 1248 1493 -16 2 658 1517 162 121 83 chr6 9657791 9658154 -139858883 + ORR1C2 LTR MaLR 6 382 -2 2 658 379 365 25 20 chr6 9658166 9658362 -139858675 - Lx8 LINE L1 -157 7316 7120 2 658 1600 353 49 23 chr6 9658394 9659299 -139857738 - Lx8 LINE L1 -463 7010 6083 2 658 27 29 0 0 chr6 9659425 9659459 -139857578 + AT_rich Low_complexity Low_complexity 1 34 0 2 658 7832 35 0 0 chr6 9659594 9660523 -139856514 - L1Md_A LINE L1 0 6582 5654 2 658 31087 114 19 4 chr6 9660691 9666938 -139850099 - L1_Mus1 LINE L1 0 6567 222 2 658 326 248 40 0 chr6 9667235 9667336 -139849701 - L1MA5 LINE L1 -1 6299 6195 2 658 223 178 0 0 chr6 9667706 9667751 -139849286 + A-rich Low_complexity Low_complexity 1 45 0 2 658 271 305 161 15 chr6 9667822 9667952 -139849085 - MLT1E LTR MaLR -61 619 471 2 658 298 166 33 114 chr6 9667925 9668170 -139848867 - RMER17D LTR ERVK -384 505 281 2 658 525 281 143 18 chr6 9668391 9668641 -139848396 - MLT1E LTR MaLR -363 291 7 2 658 4691 131 7 1 chr6 9669056 9669773 -139847264 + Lx LINE L1 5934 6654 0 2 658 17808 5 0 1 chr6 9670370 9673080 -139843957 - L1Md_A LINE L1 0 6582 3877 2 658 647 314 66 72 chr6 9673858 9674180 -139842857 - L1MD1 LINE L1 -6 6236 5930 2 658 288 0 0 0 chr6 9674180 9674212 -139842825 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 658 647 314 66 72 chr6 9674212 9674614 -139842423 - L1MD1 LINE L1 -313 5929 5516 2 658 816 323 78 49 chr6 9674699 9674810 -139842227 - Lx8 LINE L1 -1539 5934 5796 2 658 3908 26 39 6 chr6 9674810 9675277 -139841760 - LTRIS_Mm LTR ERV1 0 482 1 2 658 816 307 86 40 chr6 9675277 9675898 -139841139 - Lx8 LINE L1 -52 5795 5142 2 658 999 168 238 9 chr6 9676156 9676436 -139840601 - ORR1C1 LTR MaLR 0 378 16 2 658 236 30 0 29 chr6 9676441 9676475 -139840562 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2 658 796 96 0 0 chr6 9676475 9676590 -139840447 - B1_Mm SINE Alu -32 115 1 2 658 504 267 46 0 chr6 9676477 9676608 -139840429 - B4 SINE B4 -88 204 68 2 658 644 184 0 0 chr6 9676608 9676744 -139840293 + T-rich Low_complexity Low_complexity 3 138 0 2 658 38122 42 0 2 chr6 9676923 9683128 -139833909 + L1Md_T LINE L1 226 6511 -74 2 658 46 54 0 0 chr6 9683132 9683206 -139833831 + AT_rich Low_complexity Low_complexity 1 74 0 2 658 1096 155 5 5 chr6 9683258 9683452 -139833585 - ORR1C1-int LTR MaLR -39 1470 1277 2 658 182 150 0 24 chr6 9683466 9683507 -139833530 + CT-rich Low_complexity Low_complexity 4 43 0 2 658 231 336 18 26 chr6 9686458 9686571 -139830466 - ID_B1 SINE B4 -2 222 111 2 658 514 258 30 52 chr6 9687266 9687401 -139829636 - B3 SINE B2 -25 191 60 2 658 287 273 0 33 chr6 9687444 9687535 -139829502 + Lx9 LINE L1 7099 7186 -458 2 658 399 73 0 0 chr6 9687537 9687592 -139829445 + (CCA)n Simple_repeat Simple_repeat 1 55 0 2 658 234 0 0 0 chr6 9687647 9687673 -139829364 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 658 34 0 0 0 chr6 9687759 9687793 -139829244 + AT_rich Low_complexity Low_complexity 1 34 0 2 658 5163 37 2 0 chr6 9688361 9688981 -139828056 + L1Md_T LINE L1 5962 6582 0 2 658 947 67 22 0 chr6 9692687 9692821 -139824216 + (GAAAA)n Simple_repeat Simple_repeat 2 138 0 2 658 21 36 0 0 chr6 9693071 9693099 -139823938 + AT_rich Low_complexity Low_complexity 1 28 0 2 658 283 253 47 24 chr6 9695062 9695147 -139821890 - MER58B DNA MER1_type -15 326 240 2 658 28 29 0 0 chr6 9695251 9695286 -139821751 + AT_rich Low_complexity Low_complexity 1 35 0 2 658 8099 32 1 5 chr6 9695301 9696954 -139820083 - L1Md_F2 LINE L1 0 6582 4938 2 658 1506 162 4 0 chr6 9696952 9697205 -139819832 - Lx LINE L1 -31 6623 6370 2 658 5474 185 103 46 chr6 9697200 9697549 -139819488 - Lx4A LINE L1 -158 6900 6583 2 658 4373 88 2 3 chr6 9697549 9698143 -139818894 - L1_Mus2 LINE L1 -1 6565 5973 2 658 5474 185 103 46 chr6 9698143 9699036 -139818001 - Lx4A LINE L1 -476 6582 5587 2 658 434 271 20 54 chr6 9699170 9699318 -139817719 + Lx9 LINE L1 6998 7140 -504 2 659 405 0 0 0 chr6 9701676 9701721 -139815316 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 659 23 0 0 0 chr6 9701875 9701898 -139815139 + AT_rich Low_complexity Low_complexity 1 23 0 2 659 400 261 48 52 chr6 9702233 9702484 -139814553 + L1MEc LINE L1 1149 1398 -5002 2 659 4302 187 31 1 chr6 9702536 9703428 -139813609 + L1_Mur2 LINE L1 3966 4884 -993 2 659 1517 307 82 130 chr6 9703425 9704264 -139812773 + Lx5 LINE L1 6249 7047 -3 2 659 571 311 48 0 chr6 9704438 9704747 -139812290 + L1M2 LINE L1 3788 4111 -2032 2 659 28 48 0 0 chr6 9704814 9704856 -139812181 + AT_rich Low_complexity Low_complexity 1 42 0 2 659 4600 89 13 31 chr6 9705505 9706180 -139810857 - L1_Mus2 LINE L1 0 6566 5904 2 659 946 35 0 0 chr6 9706181 9706296 -139810741 + L1_Mus2 LINE L1 5781 5895 -743 2 659 399 369 15 15 chr6 9706614 9706749 -139810288 - B1F SINE Alu -9 140 6 2 659 4000 109 86 20 chr6 9707177 9708200 -139808837 + L1Md_A LINE L1 481 1586 -4297 2 659 579 286 29 25 chr6 9708241 9708445 -139808592 - B3 SINE B2 -11 205 1 2 659 277 256 96 0 chr6 9708490 9708615 -139808422 - Lx9 LINE L1 -6 7638 7502 2 659 346 132 27 36 chr6 9708640 9708750 -139808287 + (TA)n Simple_repeat Simple_repeat 1 109 0 2 659 248 130 50 38 chr6 9708755 9708835 -139808202 + Lx9 LINE L1 7464 7544 -100 2 659 340 82 33 0 chr6 9708835 9708896 -139808141 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 659 23 33 0 0 chr6 9709002 9709032 -139808005 + AT_rich Low_complexity Low_complexity 1 30 0 2 659 224 30 0 29 chr6 9709172 9709206 -139807831 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 2 659 1162 62 0 7 chr6 9709207 9709354 -139807683 - B1_Mm SINE Alu 0 147 2 2 659 411 332 132 27 chr6 9709354 9709771 -139807266 - MLT1F1 LTR MaLR -38 541 10 2 659 1164 261 35 45 chr6 9711543 9711920 -139805117 - Lx9 LINE L1 -225 7419 7047 2 659 3675 114 20 0 chr6 9712002 9712539 -139804498 - Lx LINE L1 -366 6288 5741 2 659 991 135 15 40 chr6 9712539 9712740 -139804297 + Lx LINE L1 6459 6654 0 2 659 22 35 0 0 chr6 9712994 9713023 -139804014 + AT_rich Low_complexity Low_complexity 1 29 0 2 659 603 71 0 0 chr6 9713355 9713440 -139803597 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 659 582 15 0 0 chr6 9714862 9714929 -139802108 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 659 411 21 0 0 chr6 9714969 9715017 -139802020 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 659 546 16 0 0 chr6 9715017 9715079 -139801958 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 659 302 182 248 57 chr6 9715240 9715345 -139801692 + B1_Mus1 SINE Alu 24 148 0 2 659 347 323 108 41 chr6 9715471 9715787 -139801250 - MER119 DNA MER1_type -75 508 172 2 659 216 0 0 0 chr6 9716449 9716473 -139800564 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 659 696 278 78 21 chr6 9716790 9716981 -139800056 - B3 SINE B2 -9 207 6 2 659 692 171 0 218 chr6 9717142 9717344 -139799693 - RMER19C LTR ERVK -448 163 6 2 659 300 271 102 36 chr6 9717358 9717504 -139799533 + MTE2a LTR MaLR 244 414 -7 2 659 29 47 0 0 chr6 9718026 9718069 -139798968 + AT_rich Low_complexity Low_complexity 1 43 0 2 659 966 100 0 0 chr6 9718271 9718411 -139798626 + (GA)n Simple_repeat Simple_repeat 2 141 0 2 659 234 283 75 66 chr6 9718872 9718978 -139798059 - L2a LINE L2 0 3426 3320 2 659 27 0 0 0 chr6 9719818 9719845 -139797192 + AT_rich Low_complexity Low_complexity 1 27 0 2 659 2225 201 104 8 chr6 9719855 9720337 -139796700 - Lx4A LINE L1 -9 7049 6522 2 659 311 197 16 0 chr6 9720348 9720409 -139796628 - L1_Mur2 LINE L1 -6291 421 360 2 659 23 0 0 0 chr6 9720490 9720513 -139796524 + AT_rich Low_complexity Low_complexity 1 23 0 2 659 21 57 0 0 chr6 9720731 9720766 -139796271 + AT_rich Low_complexity Low_complexity 1 35 0 2 659 24 77 0 0 chr6 9720791 9720843 -139796194 + AT_rich Low_complexity Low_complexity 1 52 0 2 659 2356 109 26 13 chr6 9721644 9721840 -139795197 + Lx3_Mus LINE L1 5076 5268 -618 3 659 288 0 0 0 chr6 9721840 9721872 -139795165 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 659 2356 109 26 13 chr6 9721872 9722055 -139794982 + Lx3_Mus LINE L1 5269 5459 -427 3 659 2259 108 0 0 chr6 9722049 9722365 -139794672 - L1_Mus2 LINE L1 -217 6349 6034 3 659 1250 97 0 153 chr6 9722362 9722617 -139794420 + L1_Mus2 LINE L1 6350 6565 -1 3 659 3155 86 3 6 chr6 9722645 9723121 -139793916 + Lx3_Mus LINE L1 5450 5920 -1089 3 659 419 0 20 0 chr6 9723125 9723176 -139793861 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 3 659 1833 121 15 27 chr6 9723177 9723508 -139793529 + Lx3_Mus LINE L1 5908 6234 -775 3 659 1215 301 35 0 chr6 9723806 9724152 -139792885 + Lx6 LINE L1 6927 7284 -176 3 659 237 128 0 0 chr6 9724166 9724213 -139792824 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 3 659 317 250 34 11 chr6 9724272 9724361 -139792676 + Lx7 LINE L1 7210 7300 -396 3 659 186 43 0 0 chr6 9724364 9724387 -139792650 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 659 204 40 0 0 chr6 9724387 9724411 -139792626 + (TTGG)n Simple_repeat Simple_repeat 3 27 0 3 659 182 116 0 23 chr6 9724426 9724470 -139792567 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 3 659 36 23 0 0 chr6 9724708 9724751 -139792286 + AT_rich Low_complexity Low_complexity 1 43 0 3 659 21 0 0 0 chr6 9724910 9724931 -139792106 + AT_rich Low_complexity Low_complexity 1 21 0 3 659 537 16 0 0 chr6 9725409 9725471 -139791566 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 659 260 284 215 29 chr6 9725901 9726137 -139790900 + MER2 DNA MER2_type 23 302 -43 3 659 1844 234 38 8 chr6 9726202 9726602 -139790435 + MTC LTR MaLR 9 420 -1 3 659 3178 87 5 20 chr6 9728133 9728581 -139788456 + L1Md_F2 LINE L1 6087 6527 -55 3 659 6705 74 1 59 chr6 9728579 9729390 -139787647 - L1Md_F2 LINE L1 -411 6171 5362 3 659 777 98 0 0 chr6 9729390 9729502 -139787535 + (TTTA)n Simple_repeat Simple_repeat 1 112 0 3 659 6705 76 2 209 chr6 9729502 9730422 -139786615 - L1Md_F2 LINE L1 -522 5361 4739 3 659 543 242 18 12 chr6 9730950 9731117 -139785920 - L1MA9 LINE L1 -327 5985 5818 3 659 442 96 0 64 chr6 9731119 9731197 -139785840 - L1Md_F2 LINE L1 -12 6570 6498 3 659 2287 52 0 0 chr6 9731205 9731494 -139785543 - L1Md_F2 LINE L1 -592 5990 5702 3 659 11193 80 11 5 chr6 9731482 9733035 -139784002 - L1Md_F2 LINE L1 -472 5411 3849 3 659 2831 227 34 19 chr6 9733326 9734009 -139783028 + Lx2B LINE L1 6305 6997 -3 3 659 469 358 28 0 chr6 9734135 9734314 -139782723 - B3A SINE B2 -5 193 10 3 659 23 86 0 0 chr6 9734442 9734500 -139782537 + AT_rich Low_complexity Low_complexity 1 58 0 3 659 467 273 80 30 chr6 9734641 9734841 -139782196 - Lx7 LINE L1 -1798 5898 5689 3 659 569 319 54 50 chr6 9734934 9735155 -139781882 + MTE2b LTR MaLR 154 375 -4 3 659 527 307 81 20 chr6 9735576 9735822 -139781215 + Lx7 LINE L1 6910 7170 -526 3 659 1303 51 6 6 chr6 9735957 9736134 -139780903 + (TCTCCC)n Simple_repeat Simple_repeat 4 180 0 3 659 228 271 58 12 chr6 9736230 9736316 -139780721 + Lx8 LINE L1 7358 7447 -26 3 659 748 337 20 41 chr6 9736473 9736767 -139780270 + B4A SINE B4 5 292 0 3 659 428 0 19 0 chr6 9738442 9738494 -139778543 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 3 659 23 0 0 0 chr6 9739147 9739170 -139777867 + AT_rich Low_complexity Low_complexity 1 23 0 3 659 837 265 13 5 chr6 9739735 9739959 -139777078 - URR1A DNA MER1_type 0 226 1 3 659 396 0 0 0 chr6 9740266 9740310 -139776727 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 659 249 100 0 48 chr6 9741187 9741229 -139775808 + RMER1C Other Other 913 952 -390 3 659 346 89 0 0 chr6 9741234 9741279 -139775758 + ORR1B2 LTR MaLR 314 358 -9 3 659 892 262 19 48 chr6 9741332 9741641 -139775396 + RMER1C Other Other 1040 1339 -3 3 659 500 157 2 4 chr6 9742794 9742894 -139774143 - ORR1A4 LTR MaLR -8 359 242 3 659 666 156 0 0 chr6 9742994 9743148 -139773889 + CT-rich Low_complexity Low_complexity 2 155 0 3 659 514 376 61 19 chr6 9743251 9743514 -139773523 - B4A SINE B4 -18 274 1 3 659 4688 260 47 19 chr6 9745284 9746625 -139770412 + Lx6 LINE L1 5826 7203 -257 3 659 725 114 22 28 chr6 9746679 9746860 -139770177 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 659 509 252 58 0 chr6 9746864 9747003 -139770034 + Lx7 LINE L1 7550 7696 0 3 659 665 219 44 11 chr6 9747688 9747868 -139769169 + L1_Mur3 LINE L1 1803 1988 -3892 3 659 1098 217 239 12 chr6 9748048 9748459 -139768578 - Lx9 LINE L1 -5 7639 7136 3 659 1393 283 29 35 chr6 9748495 9749066 -139767971 + Lx8 LINE L1 5351 5960 -1684 3 659 987 338 62 12 chr6 9749182 9749682 -139767355 + Lx8 LINE L1 6308 6832 -641 3 659 901 260 45 16 chr6 9749720 9749966 -139767071 + Lx6 LINE L1 7182 7434 -26 3 659 390 361 16 26 chr6 9749976 9750184 -139766853 + Lx9 LINE L1 6905 7242 -402 3 659 27651 109 20 48 chr6 9750731 9752604 -139764433 - L1_Mus1 LINE L1 -25 6542 4614 3 659 1431 78 16 0 chr6 9752604 9752795 -139764242 - B2_Mm2 SINE B2 -1 194 1 3 659 1344 92 0 26 chr6 9752798 9752988 -139764049 - B2_Mm2 SINE B2 -9 186 2 3 659 27651 102 20 57 chr6 9752988 9754859 -139762178 - L1_Mus1 LINE L1 -1270 4613 2812 3 659 541 182 17 76 chr6 9754859 9754978 -139762059 + B1_Mur4 SINE Alu 6 117 -33 3 659 27651 102 20 57 chr6 9754978 9757668 -139759369 - L1_Mus1 LINE L1 -1270 2811 218 3 659 706 292 24 0 chr6 9758928 9759137 -139757900 + B3 SINE B2 3 216 0 3 659 5447 143 35 11 chr6 9759482 9760470 -139756567 - Lx3A LINE L1 -3 6978 5967 3 659 1302 89 0 0 chr6 9760471 9760650 -139756387 + L1_Mur1 LINE L1 5292 5470 -416 3 659 1208 219 33 108 chr6 9760740 9760991 -139756046 - ORR1D1 LTR MaLR -5 369 148 3 659 867 0 92 0 chr6 9760991 9761154 -139755883 + (GA)n Simple_repeat Simple_repeat 1 178 0 3 659 1208 219 33 108 chr6 9761154 9761301 -139755736 - ORR1D1 LTR MaLR -227 147 1 3 659 517 365 109 4 chr6 9761301 9761554 -139755483 - MLT-int LTR MaLR -261 1474 1195 3 659 432 0 0 0 chr6 9761668 9761716 -139755321 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 659 270 116 0 0 chr6 9762158 9762201 -139754836 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 659 930 19 0 0 chr6 9762201 9762308 -139754729 + (CATATA)n Simple_repeat Simple_repeat 3 110 0 3 659 6341 132 30 14 chr6 9762971 9763087 -139753950 - Lx LINE L1 -10 6644 6536 3 659 219 69 0 0 chr6 9763087 9763116 -139753921 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 3 659 6341 157 30 8 chr6 9763116 9764784 -139752253 - Lx LINE L1 -119 6535 4822 3 659 181 0 69 0 chr6 9765419 9765448 -139751589 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 3 659 521 300 88 6 chr6 9765680 9765861 -139751176 - Lx8 LINE L1 -213 7260 7065 3 659 1002 138 28 39 chr6 9765903 9766084 -139750953 + URR1A DNA MER1_type 48 226 0 3 659 548 312 21 5 chr6 9766126 9766313 -139750724 - Lx8 LINE L1 -479 6994 6805 3 659 765 230 73 6 chr6 9766338 9766517 -139750520 - B3 SINE B2 -9 207 17 3 659 786 318 42 39 chr6 9766553 9766910 -139750127 - Lx8 LINE L1 -698 6775 6418 3 659 7273 86 4 1 chr6 9767378 9768556 -139748481 - L1Md_F2 LINE L1 -3 6579 5397 3 659 386 274 67 67 chr6 9768688 9768958 -139748079 + L1M5 LINE L1 3146 3415 -2731 3 659 25 83 0 0 chr6 9769214 9769274 -139747763 + AT_rich Low_complexity Low_complexity 1 60 0 3 659 32 91 0 0 chr6 9769924 9770012 -139747025 + AT_rich Low_complexity Low_complexity 1 88 0 3 659 23 0 0 0 chr6 9770260 9770283 -139746754 + AT_rich Low_complexity Low_complexity 1 23 0 3 659 384 40 0 0 chr6 9772934 9772984 -139744053 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 659 7383 102 27 35 chr6 9773473 9773562 -139743475 - Lx3_Mus LINE L1 0 7009 6907 3 659 180 0 0 0 chr6 9773562 9773582 -139743455 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 3 659 7383 102 27 35 chr6 9773582 9774680 -139742357 - Lx3_Mus LINE L1 -103 6906 5833 3 659 212 0 0 35 chr6 9774758 9774787 -139742250 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 3 659 351 301 60 0 chr6 9775155 9775238 -139741799 - B1F SINE Alu -61 88 1 3 659 2573 62 44 0 chr6 9775288 9775627 -139741410 + L1Md_F2 LINE L1 5228 5581 -302 3 659 6999 55 49 1 chr6 9775629 9776549 -139740488 + L1Md_F2 LINE L1 5607 6570 -12 3 659 369 0 0 0 chr6 9776663 9776704 -139740333 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 659 648 313 61 102 chr6 9777559 9777950 -139739087 + MTEa LTR MaLR 3 377 -2 3 659 560 172 0 8 chr6 9777980 9778097 -139738940 + (TA)n Simple_repeat Simple_repeat 2 117 0 3 659 378 147 0 0 chr6 9778464 9778532 -139738505 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 659 6457 205 33 7 chr6 9779257 9780943 -139736094 - Lx5 LINE L1 0 7050 5313 3 659 2603 221 74 8 chr6 9780931 9781580 -139735457 + Lx2B LINE L1 6305 6996 -4 3 659 296 332 45 6 chr6 9781811 9781963 -139735074 - B3 SINE B2 -23 193 39 3 659 1346 244 60 11 chr6 9781964 9782317 -139734720 + ORR1D1 LTR MaLR 1 370 -4 3 659 1959 108 6 35 chr6 9782799 9783117 -139733920 - Lx3B LINE L1 -592 6381 6073 3 659 1153 75 0 0 chr6 9783608 9783755 -139733282 - B1_Mus2 SINE Alu 0 147 1 3 659 331 308 101 58 chr6 9783816 9783954 -139733083 + B1_Mur1 SINE Alu 1 144 -5 3 659 495 243 0 0 chr6 9783960 9784112 -139732925 + (TATATG)n Simple_repeat Simple_repeat 4 155 0 3 659 737 10 0 38 chr6 9784827 9784933 -139732104 + (GA)n Simple_repeat Simple_repeat 1 102 0 3 659 182 268 156 59 chr6 9786045 9786180 -139730857 - MIRb SINE MIR -52 216 69 3 659 180 0 0 0 chr6 9786267 9786287 -139730750 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 659 270 298 8 39 chr6 9786563 9786692 -139730345 + GA-rich Low_complexity Low_complexity 3 127 0 3 659 519 301 57 0 chr6 9786998 9787174 -139729863 + U2 snRNA snRNA 2 187 -1 3 659 421 177 31 0 chr6 9787367 9787463 -139729574 - Lx9 LINE L1 -7 7637 7539 3 659 24 32 0 0 chr6 9788052 9788083 -139728954 + AT_rich Low_complexity Low_complexity 1 31 0 3 659 472 362 6 69 chr6 9788593 9788768 -139728269 + B4 SINE B4 12 175 -117 3 659 22 56 0 0 chr6 9789176 9789212 -139727825 + AT_rich Low_complexity Low_complexity 1 36 0 3 659 382 368 23 6 chr6 9789338 9789513 -139727524 + B3A SINE B2 3 180 -18 3 659 23 86 0 0 chr6 9790155 9790213 -139726824 + AT_rich Low_complexity Low_complexity 1 58 0 3 659 1006 116 11 23 chr6 9790234 9790410 -139726627 + L1Md_F2 LINE L1 6409 6582 0 3 659 514 70 0 44 chr6 9790725 9790815 -139726222 + (TATG)n Simple_repeat Simple_repeat 2 87 0 4 659 1060 113 0 0 chr6 9791269 9791411 -139725626 + B1_Mus2 SINE Alu 1 142 -5 4 659 543 292 7 33 chr6 9791469 9791621 -139725416 - B1F SINE Alu -1 148 1 4 659 235 368 52 109 chr6 9791621 9791654 -139725383 - B4 SINE B4 -214 78 56 4 659 1522 137 0 8 chr6 9791726 9791969 -139725068 - L1_Mur1 LINE L1 -114 5772 5532 4 659 297 0 0 0 chr6 9792240 9792273 -139724764 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 4 659 522 0 0 0 chr6 9792385 9792443 -139724594 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 659 1481 256 32 6 chr6 9793707 9794053 -139722984 + RLTR14 LTR ERV1 28 382 0 4 659 451 311 92 32 chr6 9794108 9794357 -139722680 + Lx8 LINE L1 7137 7400 -73 4 659 1257 105 0 0 chr6 9794370 9794677 -139722360 + (GGA)n Simple_repeat Simple_repeat 1 307 0 4 659 330 261 24 40 chr6 9794734 9794858 -139722179 + Lx6 LINE L1 145 266 -7462 4 659 973 289 77 22 chr6 9794887 9795301 -139721736 + Lx6 LINE L1 663 1099 -6629 4 659 29572 125 25 7 chr6 9795299 9801739 -139715298 + L1_Mus1 LINE L1 98 6565 -2 4 659 1115 137 0 40 chr6 9801787 9801985 -139715052 + B2_Mm2 SINE B2 6 195 0 4 659 12512 226 72 78 chr6 9801985 9802915 -139714122 + Lx6 LINE L1 1111 2060 -3820 4 659 477 127 0 0 chr6 9802915 9802994 -139714043 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 659 783 48 0 0 chr6 9802996 9803100 -139713937 + (GA)n Simple_repeat Simple_repeat 1 104 0 4 659 12512 222 77 84 chr6 9803100 9803934 -139713103 + Lx6 LINE L1 2061 2879 -3001 4 659 1110 88 0 0 chr6 9803934 9804081 -139712956 + B1_Mus1 SINE Alu 2 148 0 4 659 12512 222 77 84 chr6 9804081 9804188 -139712849 + Lx6 LINE L1 2880 2980 -2900 4 659 372 59 0 0 chr6 9804188 9804239 -139712798 + (CAAG)n Simple_repeat Simple_repeat 2 52 0 4 659 12512 222 77 84 chr6 9804239 9804692 -139712345 + Lx6 LINE L1 2981 3266 -2614 4 659 2497 128 20 3 chr6 9804692 9805084 -139711953 + Lx3_Mus LINE L1 6603 7001 -8 4 659 12512 222 77 84 chr6 9805084 9806454 -139710583 + Lx6 LINE L1 3267 4595 -1285 4 659 282 29 0 0 chr6 9806454 9806489 -139710548 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 659 12512 229 72 77 chr6 9806489 9807857 -139709180 + Lx6 LINE L1 4596 6148 -1312 4 659 416 187 0 13 chr6 9807874 9807950 -139709087 + Lx6 LINE L1 6672 6746 -714 4 659 3905 123 6 54 chr6 9807955 9808264 -139708773 - L1_Mm LINE L1 -300 5583 5294 4 659 1082 98 0 0 chr6 9808264 9808407 -139708630 - B1_Mus2 SINE Alu -2 145 3 4 659 3905 123 6 54 chr6 9808407 9808765 -139708272 - L1_Mm LINE L1 -590 5293 4948 4 659 7161 88 2 10 chr6 9808767 9809194 -139707843 + L1_Mus1 LINE L1 5599 6026 -541 4 659 4339 20 0 0 chr6 9809194 9809687 -139707350 - MT2_Mm LTR ERVL 0 493 1 4 659 7161 88 2 10 chr6 9809687 9810235 -139706802 + L1_Mus1 LINE L1 6027 6566 -1 4 659 259 250 0 0 chr6 9810238 9810302 -139706735 + Lx6 LINE L1 6741 6804 -656 4 659 236 337 23 0 chr6 9810715 9810801 -139706236 + Lx9 LINE L1 6500 6587 -1057 4 659 1918 133 253 29 chr6 9810802 9811252 -139705785 - RLTR6_Mm LTR ERV1 -67 587 37 4 659 284 194 209 0 chr6 9811291 9811358 -139705679 - RLTR6_Mm LTR ERV1 -573 81 1 4 659 23088 29 1 0 chr6 9811358 9814018 -139703019 - RLTR6-int LTR ERV1 0 7778 5118 4 659 36470 27 32 0 chr6 9814014 9818383 -139698654 - RLTR6-int LTR ERV1 -3271 4507 1 4 659 1969 135 244 30 chr6 9818384 9818851 -139698186 - RLTR6_Mm LTR ERV1 -51 603 37 4 659 284 194 209 0 chr6 9818891 9818958 -139698079 - RLTR6_Mm LTR ERV1 -573 81 1 4 659 361 122 31 82 chr6 9819022 9819120 -139697917 - L1_Mus4 LINE L1 -6 6630 6538 4 659 240 118 0 0 chr6 9819122 9819156 -139697881 - L1_Mus4 LINE L1 -617 6019 5986 4 659 1234 104 0 1 chr6 9819143 9819331 -139697706 + Lx LINE L1 5785 5968 -686 4 659 1863 88 7 84 chr6 9819351 9819697 -139697340 + L1_Mus2 LINE L1 6272 6566 0 4 659 2058 174 232 9 chr6 9819814 9820118 -139696919 + RMER6C LTR ERVK 1 352 -338 4 659 719 83 0 9 chr6 9820118 9820227 -139696810 + (CAACT)n Simple_repeat Simple_repeat 5 112 0 4 659 2058 190 169 76 chr6 9820227 9820671 -139696366 + RMER6C LTR ERVK 353 720 0 4 659 1926 165 44 113 chr6 9820917 9821368 -139695669 + RLTR23 LTR ERV1 11 430 0 4 659 52 82 0 0 chr6 9822194 9822316 -139694721 + AT_rich Low_complexity Low_complexity 1 122 0 4 659 427 364 33 22 chr6 9822353 9822628 -139694409 - B4A SINE B4 -14 278 1 4 659 23 86 0 0 chr6 9822696 9822754 -139694283 + AT_rich Low_complexity Low_complexity 1 58 0 4 659 266 174 98 96 chr6 9822896 9822988 -139694049 - L1MA8 LINE L1 -136 6053 5961 4 659 243 0 0 0 chr6 9823021 9823048 -139693989 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 659 1813 171 99 12 chr6 9823048 9823516 -139693521 - Lx3C LINE L1 -11 6970 6412 4 659 4986 157 5 2 chr6 9823507 9824471 -139692566 - Lx3C LINE L1 -958 6018 5054 4 659 5330 226 63 13 chr6 9824577 9825971 -139691066 - Lx5 LINE L1 -122 6928 5486 4 659 344 257 132 2 chr6 9825970 9826219 -139690818 + L1MB8 LINE L1 4270 4556 -1590 4 659 272 316 65 25 chr6 9826660 9826993 -139690044 + L1MB8 LINE L1 5610 5960 -224 4 659 241 226 0 19 chr6 9827087 9827141 -139689896 + L1MB8 LINE L1 6074 6126 -58 4 659 4923 221 33 39 chr6 9827588 9828790 -139688247 + L1_Mur3 LINE L1 1439 2645 -3235 4 659 198 0 0 0 chr6 9828790 9828812 -139688225 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 4 659 4923 221 33 39 chr6 9828812 9828931 -139688106 + L1_Mur3 LINE L1 2646 2752 -3128 4 659 3009 216 14 34 chr6 9828935 9829441 -139687596 + L1_Mur3 LINE L1 4110 4622 -1255 4 659 206 0 69 0 chr6 9829441 9829470 -139687567 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 659 3009 216 14 34 chr6 9829470 9829700 -139687337 + L1_Mur3 LINE L1 4623 4831 -1046 4 659 377 251 28 1 chr6 9829689 9829802 -139687235 - L1_Mur3 LINE L1 -694 5597 5464 4 659 219 290 41 14 chr6 9829991 9830066 -139686971 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 4 659 417 39 0 0 chr6 9830066 9830117 -139686920 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 4 659 259 262 18 18 chr6 9830117 9830228 -139686809 + (CAGAGA)n Simple_repeat Simple_repeat 1 111 0 4 659 25 51 0 0 chr6 9830351 9830390 -139686647 + AT_rich Low_complexity Low_complexity 1 39 0 4 660 872 102 11 21 chr6 9830692 9830838 -139686199 + ORR1A1 LTR MaLR 1 130 -196 4 660 18493 149 69 6 chr6 9830864 9835339 -139681698 + L1Md_F LINE L1 511 5214 -669 4 660 1621 120 15 8 chr6 9835344 9835604 -139681433 - L1_Mus2 LINE L1 -396 6170 5909 4 660 227 250 143 59 chr6 9835605 9835724 -139681313 - LTRIS4 LTR ERV1 -50 457 329 4 660 288 70 0 0 chr6 9835878 9835921 -139681116 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 660 292 267 9 38 chr6 9836126 9836231 -139680806 - RLTR6-int LTR ERV1 -64 7714 7613 4 660 2525 192 12 16 chr6 9836220 9836718 -139680319 - MMVL30-int LTR ERV1 -96 3602 3107 4 660 1016 165 87 92 chr6 9836700 9836966 -139680071 - MMVL30-int LTR ERV1 -1690 2008 1779 4 660 600 223 0 33 chr6 9836955 9837108 -139679929 - MMVL30-int LTR ERV1 -2035 1663 1516 4 660 435 19 0 0 chr6 9837282 9837334 -139679703 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 660 330 73 36 0 chr6 9837440 9837495 -139679542 - MMVL30-int LTR ERV1 -2187 1511 1455 4 660 349 167 227 10 chr6 9837864 9837961 -139679076 - MMVL30-int LTR ERV1 -2232 1466 1349 4 660 383 140 39 158 chr6 9838427 9838554 -139678483 - MMVL30-int LTR ERV1 -2743 955 844 4 660 271 91 23 0 chr6 9838637 9838681 -139678356 - MMVL30-int LTR ERV1 -2870 828 784 4 660 230 259 72 28 chr6 9839195 9839342 -139677695 - LTRIS2 LTR ERV1 -55 509 277 4 660 417 39 0 0 chr6 9839465 9839516 -139677521 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 4 660 1728 127 0 4 chr6 9839637 9839891 -139677146 + L1_Mus2 LINE L1 6135 6387 -179 4 660 1130 158 10 0 chr6 9840201 9840403 -139676634 + L1_Mus2 LINE L1 6432 6635 -3 4 660 1749 69 0 4 chr6 9840403 9840637 -139676400 + ORR1A1 LTR MaLR 114 346 0 4 660 12509 89 12 6 chr6 9840637 9842417 -139674620 + ORR1A1-int LTR MaLR 1 1792 0 4 660 2196 71 62 31 chr6 9842417 9842738 -139674299 + ORR1A1 LTR MaLR 1 331 -15 4 660 432 0 0 0 chr6 9842747 9842795 -139674242 + (TTA)n Simple_repeat Simple_repeat 1 48 0 4 660 585 199 27 20 chr6 9842840 9842989 -139674048 - Lx3B LINE L1 -4 6969 6820 4 660 1596 156 0 0 chr6 9843123 9843366 -139673671 + Lx4A LINE L1 6596 6838 -220 4 660 3246 154 63 24 chr6 9843366 9843984 -139673053 + RLTR26 LTR ERVK 1 642 0 4 660 1090 198 5 5 chr6 9843985 9844198 -139672839 + Lx4A LINE L1 6834 7046 -12 4 660 579 165 0 10 chr6 9844203 9844307 -139672730 - L1_Mur3 LINE L1 -3566 2314 2212 4 660 3318 291 74 19 chr6 9844307 9845036 -139672001 + Lx7 LINE L1 6401 7172 -524 4 660 1494 197 51 3 chr6 9845036 9845347 -139671690 + ORR1A3 LTR MaLR 1 326 0 4 660 3318 291 74 19 chr6 9845347 9845596 -139671441 + Lx7 LINE L1 7173 7428 -268 4 660 1053 102 7 0 chr6 9845596 9845743 -139671294 - B1_Mus1 SINE Alu 0 148 1 4 660 3318 291 74 19 chr6 9845743 9845992 -139671045 + Lx7 LINE L1 7429 7696 0 4 660 345 233 11 0 chr6 9846395 9846485 -139670552 + RMER1C Other Other 1252 1342 0 4 660 1519 278 52 41 chr6 9846820 9847497 -139669540 - RMER13B LTR ERVK -4 904 272 4 660 1436 209 29 118 chr6 9847503 9847700 -139669337 - RMER17B LTR ERVK -517 441 251 4 660 2852 89 2 10 chr6 9847700 9848099 -139668938 + MTA_Mm LTR MaLR 1 396 0 4 660 1436 209 29 118 chr6 9848099 9848186 -139668851 - RMER17B LTR ERVK -708 250 168 4 660 297 0 0 0 chr6 9848186 9848219 -139668818 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 660 1436 209 29 118 chr6 9848219 9848417 -139668620 - RMER17B LTR ERVK -791 167 2 4 660 264 30 0 0 chr6 9848614 9848647 -139668390 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 660 923 287 27 72 chr6 9848853 9849255 -139667782 - ORR1C2 LTR MaLR 0 384 1 4 660 22 0 0 0 chr6 9849380 9849402 -139667635 + AT_rich Low_complexity Low_complexity 1 22 0 4 660 423 0 0 0 chr6 9849551 9849598 -139667439 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 660 1350 190 30 69 chr6 9849737 9850042 -139666995 - ORR1A2 LTR MaLR -3 324 32 4 660 252 191 0 0 chr6 9850095 9850137 -139666900 - MT2B LTR ERVL -491 42 1 4 660 443 244 51 13 chr6 9850137 9850295 -139666742 - MERVL_2A-int LTR ERVL 0 5761 5598 4 660 1026 174 9 103 chr6 9850324 9850548 -139666489 - MERVL_2A-int LTR ERVL -536 5225 5023 4 660 15739 244 48 51 chr6 9850539 9853981 -139663056 - MERVL_2A-int LTR ERVL -960 4801 1442 4 660 657 38 0 0 chr6 9853981 9854061 -139662976 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 660 15739 244 48 51 chr6 9854061 9854232 -139662805 - MERVL_2A-int LTR ERVL -4320 1441 1253 4 660 294 29 0 0 chr6 9854232 9854267 -139662770 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 660 15739 244 48 51 chr6 9854267 9855467 -139661570 - MERVL_2A-int LTR ERVL -4509 1252 1 4 660 807 242 10 30 chr6 9855469 9855669 -139661368 - MT2B LTR ERVL -2 599 404 4 660 399 127 0 0 chr6 9856029 9856092 -139660945 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 660 21 57 0 0 chr6 9856635 9856670 -139660367 + AT_rich Low_complexity Low_complexity 1 35 0 4 660 298 315 59 24 chr6 9857173 9857342 -139659695 - Ricksha DNA MuDR -789 2457 2283 4 660 870 158 11 11 chr6 9857360 9857539 -139659498 + CT-rich Low_complexity Low_complexity 2 180 0 4 660 303 262 46 46 chr6 9857935 9858043 -139658994 - Ricksha DNA MuDR -1249 1997 1890 4 660 548 328 36 24 chr6 9858425 9858675 -139658362 + Lx8 LINE L1 6276 6525 -948 4 660 877 337 59 65 chr6 9858801 9859480 -139657557 + Lx9 LINE L1 6763 7437 -207 4 660 303 213 0 13 chr6 9859628 9859704 -139657333 + Lx2 LINE L1 6923 6997 0 4 660 222 91 0 0 chr6 9859704 9859737 -139657300 + (A)n Simple_repeat Simple_repeat 1 33 0 4 660 456 349 17 6 chr6 9860331 9860507 -139656530 - B3A SINE B2 -5 193 16 4 660 8072 167 17 4 chr6 9860520 9861969 -139655068 - Lx2B LINE L1 0 7000 5527 4 660 8560 213 17 84 chr6 9861969 9862735 -139654302 - Lx2B LINE L1 -2331 3552 2783 4 660 1310 38 0 0 chr6 9862735 9862895 -139654142 + B2_Mm1t SINE B2 1 160 -33 4 660 207 0 0 0 chr6 9862895 9862918 -139654119 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 660 8560 213 17 84 chr6 9862918 9864511 -139652526 - Lx2B LINE L1 -3101 2782 1203 4 660 1446 216 6 11 chr6 9864504 9864906 -139652131 - L1VL4 LINE L1 -5490 845 443 4 660 252 220 0 0 chr6 9865062 9865112 -139651925 - L1VL4 LINE L1 -5843 492 443 4 660 2460 166 40 5 chr6 9865741 9866189 -139650848 - Lx2 LINE L1 -1 6996 6533 4 660 5936 140 22 6 chr6 9866213 9867179 -139649858 + Lx2 LINE L1 5587 6567 -430 4 660 1223 118 16 0 chr6 9867456 9867643 -139649394 + B2_Mm1t SINE B2 1 190 -3 4 660 1019 302 86 21 chr6 9869082 9869407 -139647630 + Lx5 LINE L1 6455 6800 -250 4 660 2237 192 63 17 chr6 9869407 9869943 -139647094 - RLTR31_Mm LTR ERVK 0 561 1 4 660 212 0 36 0 chr6 9869966 9869994 -139647043 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 4 660 3241 207 50 13 chr6 9869994 9870899 -139646138 - MYSERV16_I-int LTR ERVK -22 2820 1437 4 660 579 171 67 0 chr6 9870960 9871065 -139645972 - B3 SINE B2 -103 113 2 5 660 1787 165 153 19 chr6 9871065 9871546 -139645491 + Lx LINE L1 6071 6565 -1 5 660 4328 37 2 0 chr6 9872717 9873236 -139643801 - L1Md_F2 LINE L1 -2 6580 6061 5 660 270 0 0 0 chr6 9874237 9874267 -139642770 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 5 660 4817 59 0 2 chr6 9874269 9874860 -139642177 - L1Md_F2 LINE L1 -24 6558 5969 5 660 21 0 0 0 chr6 9874960 9874981 -139642056 + AT_rich Low_complexity Low_complexity 1 21 0 5 660 399 261 64 14 chr6 9875685 9875825 -139641212 - Lx2B LINE L1 -1 6999 6853 5 660 216 0 0 0 chr6 9876094 9876118 -139640919 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 660 288 0 0 0 chr6 9876119 9876151 -139640886 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 660 27 73 0 0 chr6 9876812 9876867 -139640170 + AT_rich Low_complexity Low_complexity 1 55 0 5 660 582 307 147 38 chr6 9877804 9878254 -139638783 - MER45B DNA Tip100 -11 1029 531 5 660 1959 237 34 0 chr6 9878264 9878674 -139638363 + Lx5 LINE L1 6627 7050 0 5 660 461 343 21 0 chr6 9878843 9878983 -139638054 - MER45B DNA Tip100 -721 319 177 5 660 357 71 28 14 chr6 9878986 9879057 -139637980 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 5 660 538 29 0 0 chr6 9879058 9879127 -139637910 - B1_Mus2 SINE Alu -1 146 78 5 660 491 16 0 31 chr6 9879139 9879204 -139637833 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 5 660 289 257 14 0 chr6 9879219 9879289 -139637748 - MER45B DNA Tip100 -870 170 100 5 660 493 274 12 43 chr6 9879297 9879461 -139637576 - Lx5 LINE L1 0 7050 6892 5 660 3098 247 40 23 chr6 9879465 9880301 -139636736 - Lx5 LINE L1 -379 6671 5822 5 660 9270 198 28 19 chr6 9880303 9881416 -139635621 + L1_Mur2 LINE L1 3717 4845 -1032 5 660 5417 125 40 8 chr6 9881416 9882290 -139634747 + Lx LINE L1 5751 6652 -2 5 660 9270 198 28 19 chr6 9882290 9883241 -139633796 + L1_Mur2 LINE L1 4846 5799 -78 5 660 744 285 9 67 chr6 9883267 9883593 -139633444 + L1VL1 LINE L1 9 504 -5918 5 660 23691 173 30 58 chr6 9883588 9884877 -139632160 + L1_Mus2 LINE L1 332 1588 -4295 5 660 342 0 0 0 chr6 9884877 9884915 -139632122 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 660 23691 142 24 7 chr6 9884915 9885455 -139631582 + L1_Mus2 LINE L1 1589 2171 -3712 5 660 4728 92 0 29 chr6 9885455 9886140 -139630897 - L1_Mus1 LINE L1 0 6567 5903 5 660 23691 130 18 8 chr6 9886140 9890489 -139626548 + L1_Mus2 LINE L1 2172 6566 0 5 660 315 342 107 37 chr6 9890998 9891326 -139625711 + MLT1A LTR MaLR 1 351 -23 5 660 288 0 0 0 chr6 9892825 9892857 -139624180 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 660 757 143 34 0 chr6 9892865 9892984 -139624053 - ORR1B1 LTR MaLR 0 394 272 5 660 4008 42 2 0 chr6 9892985 9893459 -139623578 - MT2C_Mm LTR ERVL 0 475 1 5 660 261 79 0 0 chr6 9893459 9893497 -139623540 - MERVL-int LTR ERVL 0 5485 5448 5 660 354 139 26 53 chr6 9893497 9893573 -139623464 - ORR1A3-int LTR MaLR -1323 640 567 5 660 936 128 240 14 chr6 9893573 9893794 -139623243 - MERVL-int LTR ERVL -132 5629 5359 5 660 27099 65 18 1 chr6 9893794 9897218 -139619819 - MERVL-int LTR ERVL -444 5041 1560 5 660 807 31 0 0 chr6 9897218 9897314 -139619723 - MT2C_Mm LTR ERVL -379 96 1 5 660 1174 229 0 13 chr6 9897315 9897545 -139619492 - ORR1B1 LTR MaLR -120 274 48 5 660 999 166 126 0 chr6 9897827 9898026 -139619011 + URR1A DNA MER1_type 1 224 -2 5 660 276 194 52 0 chr6 9900656 9900740 -139616297 - L1MB3 LINE L1 -326 5986 5897 5 660 21 71 0 0 chr6 9901029 9901071 -139615966 + AT_rich Low_complexity Low_complexity 1 42 0 5 660 421 252 69 7 chr6 9901301 9901445 -139615592 - MTD LTR MaLR 0 419 267 5 660 1169 238 142 114 chr6 9901447 9901875 -139615162 - MT2A LTR ERVL -93 440 1 5 660 289 317 40 0 chr6 9901875 9901973 -139615064 - MTD LTR MaLR -227 192 91 5 660 5734 192 36 31 chr6 9901995 9903196 -139613841 - Lx4A LINE L1 -1 7057 5851 5 660 245 223 0 6 chr6 9903197 9903364 -139613673 + (TA)n Simple_repeat Simple_repeat 1 166 0 5 660 8936 159 142 37 chr6 9903364 9904471 -139612566 - L1_Mur2 LINE L1 -1679 4198 3072 5 660 1140 79 11 11 chr6 9904471 9904650 -139612387 + (TTC)n Simple_repeat Simple_repeat 2 180 0 5 660 8936 159 142 37 chr6 9904650 9904741 -139612296 - L1_Mur2 LINE L1 -2806 3071 3047 5 660 759 37 9 18 chr6 9904741 9904850 -139612187 + (TTCC)n Simple_repeat Simple_repeat 2 109 0 5 660 8936 159 142 37 chr6 9904850 9905017 -139612020 - L1_Mur2 LINE L1 -2831 3046 2879 5 660 627 14 0 0 chr6 9905017 9905089 -139611948 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 5 660 8936 159 142 37 chr6 9905089 9905866 -139611171 - L1_Mur2 LINE L1 -2999 2878 1829 5 660 1919 262 33 23 chr6 9905862 9906487 -139610550 - Lx2B LINE L1 -40 6960 6218 5 660 8874 186 8 9 chr6 9906476 9907344 -139609693 - L1_Mm LINE L1 -284 5599 4734 5 660 207 0 0 0 chr6 9907344 9907367 -139609670 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 660 8874 186 8 9 chr6 9907367 9908236 -139608801 - L1_Mm LINE L1 -1150 4733 3864 5 660 243 342 0 13 chr6 9908236 9908313 -139608724 - MTD LTR MaLR -345 76 1 5 660 351 250 44 36 chr6 9908527 9908664 -139608373 - Lx7 LINE L1 -5 7691 7554 5 660 1618 146 0 19 chr6 9908662 9908921 -139608116 + Lx3C LINE L1 6624 6877 -99 5 660 593 330 89 32 chr6 9908924 9909510 -139607527 - L1M5 LINE L1 -1703 4443 3825 5 660 219 125 0 0 chr6 9909632 9909672 -139607365 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 5 660 250 348 17 9 chr6 9909728 9909844 -139607193 + Lx7 LINE L1 7205 7321 -375 5 660 32761 83 11 2 chr6 9909866 9915566 -139601471 - L1Md_F2 LINE L1 0 6582 828 5 660 563 261 32 6 chr6 9915599 9915757 -139601280 + Lx8 LINE L1 7174 7335 -138 5 660 262 327 61 35 chr6 9916066 9916180 -139600857 + ID_B1 SINE B4 3 119 -105 5 660 22 35 0 0 chr6 9916344 9916373 -139600664 + AT_rich Low_complexity Low_complexity 1 29 0 5 660 216 179 0 0 chr6 9916615 9916654 -139600383 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 5 660 275 0 0 28 chr6 9916906 9916942 -139600095 + (TTA)n Simple_repeat Simple_repeat 1 35 0 5 660 259 281 10 20 chr6 9917204 9917302 -139599735 + CT-rich Low_complexity Low_complexity 1 97 0 5 660 24 32 0 0 chr6 9917509 9917540 -139599497 + AT_rich Low_complexity Low_complexity 1 31 0 5 660 253 227 22 11 chr6 9919205 9919294 -139597743 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 660 24 0 0 0 chr6 9919646 9919670 -139597367 + AT_rich Low_complexity Low_complexity 1 24 0 5 660 2249 68 3 0 chr6 9919703 9919996 -139597041 - L1_Mus1 LINE L1 0 6567 6274 5 660 23 0 0 0 chr6 9920154 9920177 -139596860 + AT_rich Low_complexity Low_complexity 1 23 0 5 660 2462 64 61 3 chr6 9920528 9920855 -139596182 - ORR1A1 LTR MaLR 0 346 1 5 660 16786 202 41 13 chr6 9922264 9924518 -139592519 + L1VL4 LINE L1 612 2885 -3001 5 660 459 52 0 0 chr6 9924518 9924576 -139592461 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 5 660 16786 192 47 13 chr6 9924576 9924593 -139592444 + L1VL4 LINE L1 2886 2919 -2967 5 660 1496 11 0 16 chr6 9924593 9924776 -139592261 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 5 660 648 0 0 0 chr6 9924777 9924849 -139592188 + (GAAAA)n Simple_repeat Simple_repeat 1 72 0 5 660 16786 192 47 13 chr6 9924849 9926972 -139590065 + L1VL4 LINE L1 2920 5124 -762 5 660 1869 124 0 0 chr6 9926967 9927233 -139589804 - L1_Mus2 LINE L1 -213 5670 5405 5 660 6072 93 17 24 chr6 9927231 9928114 -139588923 + L1_Mus2 LINE L1 5690 6566 0 5 660 6128 132 50 4 chr6 9928125 9929581 -139587456 + L1_Mus3 LINE L1 5108 6632 -6 5 660 747 202 160 8 chr6 9930702 9930952 -139586085 - Lx9 LINE L1 -1 7643 7356 5 660 296 281 17 58 chr6 9931036 9931210 -139585827 + CT-rich Low_complexity Low_complexity 3 169 0 5 660 339 25 0 0 chr6 9931492 9931532 -139585505 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 660 315 0 0 0 chr6 9931532 9931566 -139585471 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 660 246 326 60 50 chr6 9931580 9931680 -139585357 + B4 SINE B4 167 267 -25 5 660 201 121 0 0 chr6 9931774 9931807 -139585230 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 660 1165 178 23 9 chr6 9933186 9933402 -139583635 + RMER13B LTR ERVK 3 221 -687 5 660 2003 247 26 44 chr6 9933404 9933950 -139583087 + RMER13B LTR ERVK 373 908 0 5 660 786 176 0 0 chr6 9934033 9934181 -139582856 + CT-rich Low_complexity Low_complexity 3 150 0 5 660 1276 143 0 0 chr6 9934182 9934378 -139582659 - Lx2 LINE L1 -27 6970 6775 5 660 734 136 0 0 chr6 9934373 9934491 -139582546 - Lx2 LINE L1 -349 6648 6531 5 660 1000 265 56 50 chr6 9934571 9934929 -139582108 + MTE2b LTR MaLR 19 356 -23 5 660 243 358 63 82 chr6 9935412 9935680 -139581357 + B4 SINE B4 17 279 -13 5 660 7431 74 11 8 chr6 9935806 9936961 -139580076 - L1Md_F2 LINE L1 0 6582 5424 5 660 22 0 0 0 chr6 9937255 9937277 -139579760 + AT_rich Low_complexity Low_complexity 1 22 0 5 660 280 354 83 11 chr6 9937287 9937647 -139579390 - L1M3 LINE L1 -2258 3882 3497 5 660 1221 102 0 11 chr6 9937835 9938014 -139579023 - B2_Mm2 SINE B2 -13 182 6 5 660 2025 269 90 50 chr6 9938207 9939032 -139578005 - RMER1A Other Other -1 1065 41 5 660 4022 172 98 74 chr6 9939068 9939687 -139577350 + L1_Mur2 LINE L1 4167 4728 -1149 5 660 281 26 0 26 chr6 9939687 9939726 -139577311 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 660 4022 172 98 74 chr6 9939726 9940148 -139576889 + L1_Mur2 LINE L1 4729 5233 -644 5 660 6837 284 141 37 chr6 9940150 9942874 -139574163 - Lx6 LINE L1 -90 7370 3875 5 660 210 71 0 0 chr6 9942874 9942902 -139574135 + (ATG)n Simple_repeat Simple_repeat 1 28 0 5 660 6837 260 201 19 chr6 9942902 9942917 -139574120 - Lx6 LINE L1 -2012 3874 3865 5 660 336 77 0 0 chr6 9942917 9942969 -139574068 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 660 8543 226 87 29 chr6 9942969 9944640 -139572397 - Lx6 LINE L1 -2022 3855 2076 5 660 185 0 40 0 chr6 9944640 9944665 -139572372 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 660 8543 231 66 56 chr6 9944665 9945898 -139571139 - Lx6 LINE L1 -3802 2075 891 5 660 182 232 107 0 chr6 9945947 9946003 -139571034 + MER5A DNA MER1_type 58 119 -70 5 660 432 0 0 0 chr6 9946452 9946500 -139570537 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 660 1879 293 29 50 chr6 9947749 9948334 -139568703 - RMER15 LTR ERVL 0 575 3 5 660 227 55 0 53 chr6 9950429 9950467 -139566570 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 660 715 263 58 43 chr6 9950738 9951167 -139565870 + Lx5 LINE L1 895 1262 -5824 5 660 287 200 0 0 chr6 9951159 9951209 -139565828 - L1_Mur2 LINE L1 -2076 3801 3752 5 660 3037 128 18 6 chr6 9951207 9951718 -139565319 - MusHAL1 LINE L1 -532 2180 1664 5 660 525 165 0 0 chr6 9951718 9951815 -139565222 + CT-rich Low_complexity Low_complexity 1 97 0 5 660 794 73 0 0 chr6 9951815 9951925 -139565112 - MusHAL1 LINE L1 -1028 1684 1575 5 660 6683 170 30 1 chr6 9951925 9953146 -139563891 + Lx2 LINE L1 5739 6995 -2 5 660 8355 229 90 18 chr6 9953149 9953855 -139563182 + Lx5 LINE L1 1708 2737 -3143 5 660 338 0 24 0 chr6 9953855 9953897 -139563140 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 5 660 8355 224 46 21 chr6 9953897 9954796 -139562241 + Lx5 LINE L1 2738 3621 -2259 5 660 2735 69 0 0 chr6 9954796 9955142 -139561895 - ORR1A1 LTR MaLR 0 346 1 5 660 8355 224 46 21 chr6 9955142 9955706 -139561331 + L1_Mur3 LINE L1 3622 4204 -1676 6 660 414 0 0 0 chr6 9955706 9955752 -139561285 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 660 8355 224 47 21 chr6 9955752 9956302 -139560735 + Lx5 LINE L1 4188 4758 -1122 5 660 29972 121 25 16 chr6 9956297 9957749 -139559288 + L1Md_F2 LINE L1 510 1968 -3915 6 660 293 0 27 0 chr6 9957749 9957786 -139559251 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 660 29972 95 7 4 chr6 9957786 9961382 -139555655 + L1Md_F2 LINE L1 1969 5584 -299 6 82 7567 71 3 2 chr6 9961383 9962368 -139554669 + L1Md_F2 LINE L1 5587 6572 -10 6 661 314 0 49 0 chr6 9962436 9962477 -139554560 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 661 1940 239 24 41 chr6 9962482 9963097 -139553940 + Lx5 LINE L1 4752 5356 -524 5 661 360 212 0 0 chr6 9963098 9963164 -139553873 - L1_Mur2 LINE L1 -244 5633 5568 6 661 19967 174 39 30 chr6 9963178 9966372 -139550665 - Lx2 LINE L1 -4 6993 3642 6 661 486 0 0 0 chr6 9966372 9966426 -139550611 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 661 19967 193 35 49 chr6 9966426 9967051 -139549986 - Lx2 LINE L1 -2245 3641 3025 6 661 2938 108 7 0 chr6 9967051 9967469 -139549568 - BGLII LTR ERVK 0 421 1 6 661 19967 193 35 49 chr6 9967469 9968869 -139548168 - Lx2 LINE L1 -2862 3024 1644 6 661 890 144 17 17 chr6 9968869 9969045 -139547992 - Lx LINE L1 0 6654 6479 6 661 19967 187 19 99 chr6 9969045 9970386 -139546651 - Lx2 LINE L1 -4243 1643 557 6 661 1208 201 8 24 chr6 9970359 9970614 -139546423 - Lx5 LINE L1 -276 5601 5351 5 661 4395 220 112 9 chr6 9970607 9971867 -139545170 + Lx5 LINE L1 5661 7049 -1 5 661 1978 269 36 15 chr6 9971876 9972754 -139544283 + Lx6 LINE L1 5366 6273 -1187 6 661 1065 306 53 29 chr6 9972784 9973294 -139543743 + Lx6 LINE L1 6469 7377 -83 6 661 250 337 54 0 chr6 9975053 9975237 -139541800 + L1MB1 LINE L1 5662 5855 -457 6 661 294 29 0 0 chr6 9975273 9975308 -139541729 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 661 539 126 11 0 chr6 9975747 9975842 -139541195 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 661 332 284 69 20 chr6 9975845 9975997 -139541040 + L1MB1 LINE L1 5940 6098 -214 6 661 343 299 43 86 chr6 9976862 9976979 -139540058 + RSINE1 SINE B4 54 165 0 6 661 242 312 0 0 chr6 9976979 9977043 -139539994 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 661 27 29 0 0 chr6 9977046 9977080 -139539957 + AT_rich Low_complexity Low_complexity 1 34 0 6 661 32521 92 4 3 chr6 9977162 9983481 -139533556 + L1Md_F2 LINE L1 236 6562 -20 6 661 261 296 0 0 chr6 9983645 9983716 -139533321 + L1M2 LINE L1 5688 5758 -533 6 661 330 26 0 0 chr6 9983719 9983758 -139533279 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 661 286 333 80 18 chr6 9983892 9984005 -139533032 + B3A SINE B2 1 120 -78 6 661 246 32 0 0 chr6 9984008 9984039 -139532998 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 6 661 960 98 0 0 chr6 9984039 9984171 -139532866 - B1_Mus1 SINE Alu 0 148 17 6 661 703 273 122 5 chr6 9984175 9984363 -139532674 - B3 SINE B2 -2 214 5 6 661 1115 298 56 25 chr6 9984624 9985296 -139531741 - Lx9 LINE L1 -1601 6095 5384 6 661 463 331 21 0 chr6 9985309 9985454 -139531583 + Lx9 LINE L1 6510 6657 -987 6 661 969 294 81 51 chr6 9985595 9986169 -139530868 + Lx9 LINE L1 6562 7294 -350 6 661 22 0 0 0 chr6 9986406 9986428 -139530609 + AT_rich Low_complexity Low_complexity 1 22 0 6 661 504 0 0 0 chr6 9986505 9986561 -139530476 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 661 1101 64 17 0 chr6 9988329 9988501 -139528536 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 6 661 219 250 13 0 chr6 9988522 9988598 -139528439 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 661 28 0 0 0 chr6 9989639 9989667 -139527370 + AT_rich Low_complexity Low_complexity 1 28 0 6 661 2276 184 26 43 chr6 9990026 9990492 -139526545 - Lx4A LINE L1 0 7058 6601 6 661 3035 185 111 10 chr6 9990499 9991568 -139525469 - L1_Mur2 LINE L1 -4198 1679 504 6 661 7074 78 21 10 chr6 9991580 9993054 -139523983 - L1Md_F2 LINE L1 -12 6570 5086 6 661 8559 80 3 1 chr6 9993052 9994225 -139522812 + L1Md_F2 LINE L1 3916 5091 -792 6 661 660 266 7 7 chr6 9995855 9996010 -139521027 - Lx9 LINE L1 -340 7304 7150 6 661 540 309 18 0 chr6 9996026 9996194 -139520843 + Lx9 LINE L1 7295 7465 -179 6 661 309 109 0 0 chr6 9996201 9996247 -139520790 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 661 366 383 45 15 chr6 9996877 9997142 -139519895 + Lx8 LINE L1 7041 7313 -160 6 661 23 0 0 0 chr6 9997545 9997568 -139519469 + AT_rich Low_complexity Low_complexity 1 23 0 6 661 422 345 26 39 chr6 9997984 9998216 -139518821 + RMER15 LTR ERVL 342 570 -5 6 661 267 31 0 0 chr6 9998757 9998789 -139518248 + (A)n Simple_repeat Simple_repeat 1 32 0 6 661 3633 78 27 18 chr6 9998847 9999358 -139517679 + L1Md_F2 LINE L1 6060 6575 -7 6 661 4919 46 10 3 chr6 9999365 9999978 -139517059 - L1Md_F3 LINE L1 -1 6583 5967 6 661 387 41 0 0 chr6 10001031 10001080 -139515957 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 1 661 8191 130 18 9 chr6 10001081 10002385 -139514652 - Lx3A LINE L1 -16 6965 5650 2 661 1523 84 0 112 chr6 10002381 10002650 -139514387 + Lx3A LINE L1 6099 6337 -644 3 661 1254 167 19 49 chr6 10002646 10002747 -139514290 - L1_Mur1 LINE L1 -228 5658 5556 4 661 6005 145 18 18 chr6 10002747 10003770 -139513267 - RLTR13D5 LTR ERVK 0 1023 1 5 661 1254 167 19 49 chr6 10003770 10003933 -139513104 - L1_Mur1 LINE L1 -331 5555 5402 4 661 5545 97 11 4 chr6 10003928 10004749 -139512288 + L1_Mur1 LINE L1 4555 5381 -505 4 661 41 0 0 0 chr6 10006256 10006297 -139510740 + AT_rich Low_complexity Low_complexity 1 41 0 6 661 4380 113 7 22 chr6 10006621 10007301 -139509736 - L1_Mus3 LINE L1 -7 6631 5962 7 661 756 78 1 0 chr6 10007302 10007413 -139509624 - L1_Mur2 LINE L1 -1994 4149 4021 8 661 917 343 33 26 chr6 10009087 10009626 -139507411 - Lx9 LINE L1 -176 7468 6926 9 661 667 269 138 8 chr6 10009614 10009861 -139507176 + Lx9 LINE L1 6661 6939 -705 9 661 1605 193 0 3 chr6 10010113 10010409 -139506628 - Lx LINE L1 -18 6636 6342 1 661 545 0 15 0 chr6 10010468 10010533 -139506504 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 661 3100 25 0 0 chr6 10010545 10010908 -139506129 + L1Md_A LINE L1 6219 6581 -1 1 661 24 0 0 0 chr6 10011180 10011204 -139505833 + AT_rich Low_complexity Low_complexity 1 24 0 1 661 19172 152 86 16 chr6 10011356 10013851 -139503186 - L1_Mus4 LINE L1 -3 6633 4069 1 661 804 11 0 0 chr6 10013851 10013944 -139503093 + (GA)n Simple_repeat Simple_repeat 2 94 0 1 661 19172 179 101 14 chr6 10013944 10015405 -139501632 - L1_Mus4 LINE L1 -1815 4068 2613 1 661 207 0 0 0 chr6 10015405 10015428 -139501609 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 661 19172 187 64 13 chr6 10015428 10017163 -139499874 - L1_Mus4 LINE L1 -3271 2612 512 1 661 25 65 0 0 chr6 10017254 10017300 -139499737 + AT_rich Low_complexity Low_complexity 1 46 0 1 661 22 0 0 0 chr6 10017596 10017618 -139499419 + AT_rich Low_complexity Low_complexity 1 22 0 1 661 395 19 19 0 chr6 10017644 10017696 -139499341 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1 661 1460 42 0 21 chr6 10017696 10017878 -139499159 - L1_Mus1 LINE L1 -21 6546 6366 2 661 320 245 14 117 chr6 10019712 10019925 -139497112 - Lx7 LINE L1 -151 7545 7355 2 661 4127 170 75 4 chr6 10019947 10020746 -139496291 + Lx2 LINE L1 6141 6996 -1 2 661 23 0 0 0 chr6 10020746 10020769 -139496268 + AT_rich Low_complexity Low_complexity 1 23 0 2 661 473 217 0 0 chr6 10020831 10020923 -139496114 - Lx7 LINE L1 -348 7348 7257 2 661 5345 107 13 41 chr6 10020952 10021803 -139495234 - L1_Mus3 LINE L1 -7 6631 5805 2 661 219 69 0 0 chr6 10021828 10021857 -139495180 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 661 255 292 0 0 chr6 10021861 10021933 -139495104 - Lx7 LINE L1 -456 7240 7169 2 661 449 125 100 0 chr6 10021970 10022050 -139494987 - L1_Mur3 LINE L1 -1111 4769 4682 2 661 2711 262 72 38 chr6 10022109 10022998 -139494039 - L1_Mur3 LINE L1 -6755 957 39 2 661 21 71 0 0 chr6 10023093 10023135 -139493902 + AT_rich Low_complexity Low_complexity 1 42 0 2 661 189 107 0 0 chr6 10023142 10023170 -139493867 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 661 1144 179 55 28 chr6 10023457 10023710 -139493327 - RMER16 LTR ERVK 0 533 274 3 661 405 0 0 0 chr6 10023745 10023790 -139493247 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 661 33001 35 52 8 chr6 10023791 10028741 -139488296 + L1Md_T LINE L1 423 5586 -297 3 661 8041 48 1 0 chr6 10028741 10029733 -139487304 + L1Md_T LINE L1 5587 6579 -3 3 661 9504 86 1 2 chr6 10029744 10031761 -139485276 - L1Md_F2 LINE L1 -17 6565 4551 3 661 5647 152 53 8 chr6 10031758 10033271 -139483766 - Lx LINE L1 -81 6573 5016 3 661 1086 73 0 0 chr6 10033384 10033661 -139483376 + (TCTA)n Simple_repeat Simple_repeat 1 277 0 3 661 5787 29 0 0 chr6 10033714 10034440 -139482597 - L1Md_T LINE L1 -317 6265 5540 3 661 2534 38 3 3 chr6 10034440 10034755 -139482282 + L1Md_T LINE L1 6268 6582 0 3 661 634 211 0 45 chr6 10035607 10035741 -139481296 + B1_Mus1 SINE Alu 14 141 -7 3 661 6574 86 56 2 chr6 10036392 10037320 -139479717 - L1_Mus1 LINE L1 -3 6564 5587 3 661 1621 164 116 37 chr6 10037330 10037709 -139479328 + RLTR9E LTR ERVK 1 409 0 3 661 2486 235 100 70 chr6 10037711 10038845 -139478192 + MMETn-int LTR ERVK 2 1169 -3675 3 661 1518 198 206 29 chr6 10038844 10039320 -139477717 + ETnERV2-int LTR ERVK 2428 2987 -4419 4 661 3846 189 33 36 chr6 10039336 10041360 -139475677 + ETnERV2-int LTR ERVK 2360 4085 -3321 4 661 268 103 32 65 chr6 10041455 10041517 -139475520 + RLTR45-int LTR ERVK 6009 6068 -1176 4 661 1586 147 4 4 chr6 10041534 10041787 -139475250 + ETnERV3-int LTR ERVK 5529 5781 -27 4 661 1852 202 155 11 chr6 10041794 10042265 -139474772 + RLTR13D6 LTR ERVK 1 539 -363 4 661 481 83 0 40 chr6 10042266 10042341 -139474696 + ETnERV2-int LTR ERVK 7332 7403 -3 4 661 1644 169 111 29 chr6 10042343 10042721 -139474316 + RLTR9E LTR ERVK 1 409 0 4 661 7170 122 4 3 chr6 10042724 10043818 -139473219 - L1_Mm LINE L1 -304 5579 4485 4 661 537 248 16 0 chr6 10043818 10043947 -139473090 + MT2A LTR ERVL 94 224 -309 4 661 648 0 0 0 chr6 10043972 10044044 -139472993 + (TTTC)n Simple_repeat Simple_repeat 4 75 0 4 661 1014 157 0 0 chr6 10044054 10044232 -139472805 + CT-rich Low_complexity Low_complexity 1 178 0 4 661 727 101 8 8 chr6 10044232 10044335 -139472702 + (TTC)n Simple_repeat Simple_repeat 3 106 0 4 661 1308 79 0 0 chr6 10044335 10044513 -139472524 + (TCC)n Simple_repeat Simple_repeat 3 180 0 4 661 727 101 8 8 chr6 10044513 10044529 -139472508 + (TTC)n Simple_repeat Simple_repeat 2 17 0 4 661 522 274 134 22 chr6 10044529 10044708 -139472329 + MT2A LTR ERVL 316 589 -12 4 661 21 71 0 0 chr6 10045047 10045089 -139471948 + AT_rich Low_complexity Low_complexity 1 42 0 5 661 23 0 0 0 chr6 10045829 10045852 -139471185 + AT_rich Low_complexity Low_complexity 1 23 0 5 661 881 300 123 3 chr6 10045876 10046200 -139470837 - ORR1D2 LTR MaLR -2 368 6 5 661 253 243 99 14 chr6 10046631 10046702 -139470335 - MIR SINE MIR -17 245 169 5 661 26 50 0 0 chr6 10047055 10047095 -139469942 + AT_rich Low_complexity Low_complexity 1 40 0 5 661 440 345 108 61 chr6 10047158 10047436 -139469601 - B4A SINE B4 -1 291 1 5 661 1053 195 5 9 chr6 10047498 10047710 -139469327 - L1_Mm LINE L1 -946 4937 4727 5 661 1962 219 100 67 chr6 10047710 10048479 -139468558 - RMER19B LTR ERVK -17 885 8 5 661 207 0 0 0 chr6 10048503 10048526 -139468511 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 661 4128 168 17 25 chr6 10048630 10049463 -139467574 - L1_Mur3 LINE L1 -1605 4275 3450 5 661 1445 300 49 21 chr6 10049528 10050114 -139466923 + Lx6 LINE L1 6454 7434 -26 6 661 644 27 0 0 chr6 10050370 10050443 -139466594 + tRNA-Val-GTG tRNA tRNA 1 73 -3 6 661 1581 47 0 0 chr6 10050451 10050643 -139466394 + B2_Mm1a SINE B2 2 193 0 6 661 183 42 0 0 chr6 10051241 10051265 -139465772 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 6 661 982 193 32 9 chr6 10051344 10051564 -139465473 + URR1A DNA MER1_type 1 225 -1 6 661 21 36 0 0 chr6 10052207 10052235 -139464802 + AT_rich Low_complexity Low_complexity 1 28 0 6 661 24 77 0 0 chr6 10052656 10052708 -139464329 + AT_rich Low_complexity Low_complexity 1 52 0 6 661 21 71 0 0 chr6 10052756 10052798 -139464239 + AT_rich Low_complexity Low_complexity 1 42 0 6 661 308 283 22 208 chr6 10052812 10052995 -139464042 - B3A SINE B2 -8 190 42 6 661 880 217 76 14 chr6 10053013 10053223 -139463814 + URR1B DNA MER1_type 1 223 -2 6 661 1956 186 88 187 chr6 10053375 10054161 -139462876 - RMER6D LTR ERVK -12 708 1 7 661 240 86 0 0 chr6 10054662 10054697 -139462340 + (ATG)n Simple_repeat Simple_repeat 1 35 0 7 661 297 75 0 0 chr6 10054972 10055012 -139462025 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 661 344 363 80 0 chr6 10055711 10055824 -139461213 + RSINE1 SINE B4 44 165 0 7 661 2916 295 29 37 chr6 10056556 10057336 -139459701 + Lx7 LINE L1 6011 6783 -913 7 661 300 91 0 0 chr6 10057336 10057380 -139459657 + (TTA)n Simple_repeat Simple_repeat 1 44 0 7 661 2471 146 8 10 chr6 10057384 10057786 -139459251 - Lx3B LINE L1 -3 6970 6570 7 661 2916 295 29 37 chr6 10057786 10057968 -139459069 + Lx7 LINE L1 6784 6970 -726 7 661 439 189 93 17 chr6 10058060 10058232 -139458805 - Lx9 LINE L1 0 7644 7460 7 661 237 150 28 83 chr6 10058269 10058378 -139458659 - Lx9 LINE L1 -127 7517 7415 7 661 648 67 0 0 chr6 10058716 10058806 -139458231 + (TA)n Simple_repeat Simple_repeat 2 91 0 7 661 24 32 0 0 chr6 10059542 10059573 -139457464 + AT_rich Low_complexity Low_complexity 1 31 0 8 661 27 81 0 0 chr6 10060533 10060595 -139456442 + AT_rich Low_complexity Low_complexity 1 62 0 8 661 3302 100 2 2 chr6 10061809 10062271 -139454766 - L1_Mus1 LINE L1 -2 6565 6104 8 661 406 204 18 88 chr6 10062616 10062729 -139454308 + MT2B LTR ERVL 153 257 -344 8 661 982 106 7 0 chr6 10062631 10062764 -139454273 + B1_Mus1 SINE Alu 6 139 -9 8 661 279 0 0 0 chr6 10062764 10062795 -139454242 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 661 9761 246 58 66 chr6 10062819 10066873 -139450164 + MYSERV6-int LTR ERVK 43 4713 -1837 8 661 510 300 106 39 chr6 10067003 10067211 -139449826 + MYSERV6-int LTR ERVK 4894 5115 -1435 8 661 2455 130 3 5 chr6 10067299 10067687 -139449350 - L1_Mus4 LINE L1 0 6636 6250 8 661 734 266 32 40 chr6 10067839 10068086 -139448951 + RLTR12B LTR ERVK 54 298 -230 8 661 639 317 32 50 chr6 10068109 10068388 -139448649 + RLTR12B LTR ERVK 246 519 -9 8 661 335 327 38 25 chr6 10068427 10068587 -139448450 - L1MEc LINE L1 -349 5988 5827 9 661 549 42 0 0 chr6 10068626 10068698 -139448339 + (TG)n Simple_repeat Simple_repeat 2 73 0 9 661 210 171 0 0 chr6 10069005 10069046 -139447991 + (TA)n Simple_repeat Simple_repeat 2 42 0 9 661 1133 62 7 0 chr6 10069158 10069304 -139447733 - B1_Mus1 SINE Alu 0 148 2 9 661 364 328 41 4 chr6 10069574 10069840 -139447197 - L1MEc LINE L1 -1389 4930 4655 9 661 21 0 0 0 chr6 10069844 10069865 -139447172 + AT_rich Low_complexity Low_complexity 1 21 0 9 661 5014 169 42 19 chr6 10069960 10070946 -139446091 + Lx2B LINE L1 5951 6867 -133 9 661 528 16 0 0 chr6 10071264 10071325 -139445712 + (TC)n Simple_repeat Simple_repeat 2 62 0 9 661 326 23 23 0 chr6 10071325 10071367 -139445670 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 661 579 390 40 7 chr6 10071392 10071668 -139445369 - B4A SINE B4 -1 291 7 9 661 3680 78 2 16 chr6 10071691 10072197 -139444840 - L1Md_F2 LINE L1 0 6582 6084 9 661 423 38 0 0 chr6 10072351 10072404 -139444633 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 661 504 0 0 0 chr6 10072404 10072460 -139444577 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 661 1415 206 160 17 chr6 10072460 10073023 -139444014 - RMER6D LTR ERVK -10 680 1 1 661 2814 186 13 25 chr6 10073023 10073687 -139443350 - RMER6-int LTR ERVK 0 3177 2590 1 661 1610 182 19 9 chr6 10073782 10074330 -139442707 - RMER6-int LTR ERVK -2599 578 1 1 661 239 258 43 43 chr6 10074337 10074406 -139442631 - RMER6D LTR ERVK -7 713 645 1 661 350 305 152 8 chr6 10074715 10074979 -139442058 - L1MEc LINE L1 -5350 1050 749 9 661 3063 59 5 5 chr6 10075043 10075435 -139441602 - L1_Mus1 LINE L1 -6 6561 6170 1 661 932 148 0 6 chr6 10075485 10075655 -139441382 + CT-rich Low_complexity Low_complexity 1 169 0 1 661 984 120 0 0 chr6 10075655 10075797 -139441240 - B1_Mus1 SINE Alu -6 142 1 1 661 23 33 0 0 chr6 10076473 10076503 -139440534 + AT_rich Low_complexity Low_complexity 1 30 0 1 661 1811 84 8 0 chr6 10076973 10077222 -139439815 - L1_Mus1 LINE L1 -1 6566 6316 1 661 2961 74 20 0 chr6 10077234 10077628 -139439409 - L1Md_F2 LINE L1 -19 6563 6162 1 661 306 67 0 0 chr6 10077823 10077868 -139439169 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 661 181 311 13 13 chr6 10078246 10078321 -139438716 - L4 LINE RTE -1433 596 522 1 661 1609 244 46 13 chr6 10079717 10080111 -139436926 + Lx6 LINE L1 7035 7441 -19 1 661 201 114 57 0 chr6 10080121 10080156 -139436881 + GA-rich Low_complexity Low_complexity 2 38 0 1 661 2882 212 46 31 chr6 10080368 10081036 -139436001 - Lx3C LINE L1 0 6976 6299 1 661 3196 82 31 7 chr6 10081392 10081846 -139435191 + L1Md_F2 LINE L1 6118 6582 0 1 661 633 38 0 0 chr6 10081938 10082018 -139435019 + (GAAAA)n Simple_repeat Simple_repeat 2 81 0 1 661 267 31 0 0 chr6 10082019 10082051 -139434986 + (CAAGG)n Simple_repeat Simple_repeat 1 32 0 1 661 270 73 0 0 chr6 10082671 10082712 -139434325 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 661 405 0 0 0 chr6 10082725 10082770 -139434267 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 661 408 20 0 0 chr6 10083397 10083446 -139433591 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 661 582 54 0 0 chr6 10083446 10083519 -139433518 + (GA)n Simple_repeat Simple_repeat 2 75 0 1 661 374 377 0 0 chr6 10083836 10083942 -139433095 + RSINE1 SINE B4 3 108 -57 1 661 388 307 99 35 chr6 10083984 10084126 -139432911 + MER5A1 DNA MER1_type 1 151 -15 1 661 649 316 115 67 chr6 10084292 10084832 -139432205 - MLT2B2 LTR ERVL -25 576 5 1 661 1066 232 4 20 chr6 10085250 10085496 -139431541 + L1_Mur3 LINE L1 600 841 -6887 1 661 1213 278 35 6 chr6 10085496 10085836 -139431201 + MTC LTR MaLR 1 350 -71 1 661 269 316 0 12 chr6 10085921 10086001 -139431036 + MTC LTR MaLR 343 421 0 1 661 2970 208 111 30 chr6 10086001 10087320 -139429717 + L1_Mur3 LINE L1 837 2280 -3600 1 661 193 367 28 0 chr6 10087632 10087741 -139429296 + L3 LINE CR1 4229 4340 -149 1 661 34 42 0 0 chr6 10088819 10088867 -139428170 + AT_rich Low_complexity Low_complexity 1 48 0 1 661 1469 137 54 28 chr6 10089405 10089768 -139427269 + IAPLTR2a LTR ERVK 1 390 -85 1 661 566 110 132 45 chr6 10089746 10089967 -139427070 + IAPLTR2b LTR ERVK 213 475 0 1 661 584 359 50 39 chr6 10090325 10090682 -139426355 + Lx8 LINE L1 7057 7417 -56 1 661 218 364 91 0 chr6 10091035 10091123 -139425914 + ID_B1 SINE B4 81 176 -48 1 661 291 313 86 57 chr6 10091045 10091150 -139425887 + PB1D10 SINE Alu 10 117 0 1 661 369 0 0 0 chr6 10091158 10091199 -139425838 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 661 324 0 0 0 chr6 10091199 10091234 -139425803 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 661 477 0 0 0 chr6 10091559 10091612 -139425425 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 661 21 36 0 0 chr6 10092338 10092366 -139424671 + AT_rich Low_complexity Low_complexity 1 28 0 1 661 213 39 0 0 chr6 10092419 10092445 -139424592 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 662 180 0 0 0 chr6 10092569 10092589 -139424448 + (TTTTTA)n Simple_repeat Simple_repeat 6 25 0 1 662 23 33 0 0 chr6 10092779 10092809 -139424228 + AT_rich Low_complexity Low_complexity 1 30 0 1 662 908 144 6 0 chr6 10093434 10093607 -139423430 + CT-rich Low_complexity Low_complexity 3 176 0 1 662 1021 124 0 17 chr6 10093609 10093686 -139423351 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1 662 1043 128 0 16 chr6 10093686 10093869 -139423168 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 662 1021 124 0 17 chr6 10093869 10093972 -139423065 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 1 662 681 187 0 0 chr6 10093977 10094111 -139422926 + CT-rich Low_complexity Low_complexity 2 135 0 1 662 197 146 21 0 chr6 10094376 10094424 -139422613 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1 662 1785 298 85 20 chr6 10095425 10096034 -139421003 - Lx6 LINE L1 -56 7404 6756 1 662 586 314 45 5 chr6 10096431 10096633 -139420404 - B3 SINE B2 -4 212 3 1 662 590 261 73 126 chr6 10096645 10096851 -139420186 - B3 SINE B2 0 195 1 1 662 35345 36 0 0 chr6 10097001 10102439 -139414598 + L1Md_T LINE L1 54 5589 -297 1 662 8964 6 0 0 chr6 10102439 10103434 -139413603 + L1Md_T LINE L1 5590 6584 -1 1 662 180 0 0 0 chr6 10103446 10103466 -139413571 + (A)n Simple_repeat Simple_repeat 1 20 0 1 662 618 75 19 9 chr6 10103491 10103598 -139413439 + L1_Mus3 LINE L1 6515 6622 -16 1 662 382 299 0 0 chr6 10103643 10103740 -139413297 - MTE2b LTR MaLR -281 98 2 1 662 3840 167 137 14 chr6 10103873 10104675 -139412362 - RMER19B LTR ERVK 0 902 2 1 662 212 359 83 15 chr6 10104815 10104948 -139412089 - B1F1 SINE Alu -2 147 6 1 662 217 188 31 0 chr6 10105081 10105145 -139411892 + A-rich Low_complexity Low_complexity 1 66 0 1 662 497 321 11 48 chr6 10105179 10105378 -139411659 - MTD LTR MaLR -211 210 18 1 662 1792 239 97 41 chr6 10107141 10107678 -139409359 + RMER2 LTR ERV1 1 567 0 1 662 464 345 86 15 chr6 10107802 10107999 -139409038 + B3A SINE B2 1 211 -5 1 662 423 321 73 18 chr6 10108338 10108503 -139408534 + B4 SINE B4 2 175 -117 1 662 1778 234 62 31 chr6 10108891 10109403 -139407634 - RMER19C LTR ERVK -238 664 140 1 662 466 267 0 0 chr6 10110451 10110552 -139406485 + ID_B1 SINE B4 101 201 -23 1 662 7176 220 92 29 chr6 10111084 10113392 -139403645 + L1_Mur3 LINE L1 2199 4652 -1228 1 662 2559 130 47 2 chr6 10113395 10113818 -139403219 + Lx LINE L1 6210 6651 -3 1 662 1269 271 8 22 chr6 10113890 10114245 -139402792 + Lx7 LINE L1 6054 6403 -1293 1 662 526 297 29 14 chr6 10114285 10114580 -139402457 - Lx9 LINE L1 -407 7237 6912 1 662 264 385 57 6 chr6 10115419 10115576 -139401461 + B4A SINE B4 11 175 -117 1 662 1001 139 0 6 chr6 10115863 10116037 -139401000 + (GGGA)n Simple_repeat Simple_repeat 2 174 0 1 662 23 68 0 0 chr6 10116183 10116227 -139400810 + AT_rich Low_complexity Low_complexity 1 44 0 1 662 5502 207 34 36 chr6 10116230 10117847 -139399190 - Lx2B LINE L1 -46 6954 5307 1 662 627 306 80 45 chr6 10118181 10118445 -139398592 - ORR1E LTR MaLR -81 278 6 1 662 4274 93 14 0 chr6 10118805 10119475 -139397562 - L1_Mus4 LINE L1 0 6636 6033 1 662 1810 113 7 7 chr6 10119548 10119825 -139397212 - L1_Mus3 LINE L1 -6 6632 6356 1 662 1364 100 0 0 chr6 10119828 10120008 -139397029 + L1_Mus3 LINE L1 6078 6257 -381 1 662 948 157 0 0 chr6 10120277 10120443 -139396594 + CT-rich Low_complexity Low_complexity 4 169 0 1 662 3751 159 2 6 chr6 10120446 10121084 -139395953 - L1_Mus4 LINE L1 -2 6634 6000 1 662 3172 145 6 9 chr6 10121084 10121663 -139395374 + L1_Mm LINE L1 3731 4272 -1611 1 662 22 56 0 0 chr6 10123132 10123168 -139393869 + AT_rich Low_complexity Low_complexity 1 36 0 1 662 30 27 0 0 chr6 10123246 10123283 -139393754 + AT_rich Low_complexity Low_complexity 1 37 0 1 662 378 251 0 88 chr6 10124280 10124402 -139392635 + PB1 SINE Alu 17 128 -21 1 662 1633 204 109 17 chr6 10124738 10125151 -139391886 - Lx2B LINE L1 -2 6998 6548 1 662 14999 120 30 4 chr6 10125357 10129556 -139387481 - L1_Mus1 LINE L1 -1 6569 961 1 662 1275 132 5 10 chr6 10129556 10129755 -139387282 - L1VL1 LINE L1 -6223 199 2 1 662 27 49 0 0 chr6 10130043 10130084 -139386953 + AT_rich Low_complexity Low_complexity 1 41 0 1 662 27 29 0 0 chr6 10130558 10130592 -139386445 + AT_rich Low_complexity Low_complexity 1 34 0 1 662 345 62 0 0 chr6 10133060 10133108 -139383929 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 662 514 272 30 24 chr6 10133123 10133289 -139383748 - Lx9 LINE L1 -203 7441 7275 1 662 14516 158 55 31 chr6 10133351 10134839 -139382198 - L1_Mur1 LINE L1 -1567 4319 2812 1 662 369 0 0 0 chr6 10134839 10134880 -139382157 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 662 14516 158 55 31 chr6 10134880 10135593 -139381444 - L1_Mur1 LINE L1 -3075 2811 2019 1 662 5518 150 30 3 chr6 10135593 10136388 -139380649 + Lx2 LINE L1 6048 6841 -156 1 662 648 38 0 0 chr6 10136388 10136467 -139380570 + (GAATG)n Simple_repeat Simple_repeat 3 81 0 1 662 5518 150 30 3 chr6 10136467 10136594 -139380443 + Lx2 LINE L1 6842 6994 -3 1 662 14516 158 55 31 chr6 10136594 10137257 -139379780 - L1_Mur1 LINE L1 -3868 2018 1383 1 662 2105 132 3 3 chr6 10137257 10137584 -139379453 + ORR1A2 LTR MaLR 1 327 0 1 662 14516 175 30 9 chr6 10137584 10138312 -139378725 - L1_Mur1 LINE L1 -4504 1382 457 1 662 609 268 106 0 chr6 10138393 10138572 -139378465 - MTD LTR MaLR -209 210 13 1 662 182 37 0 36 chr6 10138572 10138600 -139378437 + (CAAAAA)n Simple_repeat Simple_repeat 5 31 0 1 662 2253 193 45 12 chr6 10138778 10139286 -139377751 + RLTR11A2 LTR ERVK 1 525 -2 1 662 2416 43 3 3 chr6 10140456 10140758 -139376279 + L1Md_T LINE L1 6281 6582 0 1 662 864 287 52 86 chr6 10140917 10141108 -139375929 + ORR1D1 LTR MaLR 4 181 -193 1 662 450 0 0 0 chr6 10141108 10141158 -139375879 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 662 864 287 52 86 chr6 10141158 10141348 -139375689 + ORR1D1 LTR MaLR 182 372 -2 1 662 3082 168 186 2 chr6 10141497 10142119 -139374918 - RMER19A LTR ERVK 0 737 1 1 662 2576 184 146 33 chr6 10142136 10142793 -139374244 - RLTR22_Mur LTR ERVK -1114 734 4 1 662 1563 196 14 26 chr6 10142816 10143166 -139373871 - Lx4A LINE L1 -1107 5951 5606 1 662 1730 145 14 10 chr6 10143160 10143453 -139373584 + Lx4A LINE L1 5319 5612 -265 1 662 6441 139 51 15 chr6 10143477 10144877 -139372160 - L1_Mur2 LINE L1 -3328 2549 1103 2 662 2973 35 0 0 chr6 10144877 10145223 -139371814 + ORR1A0 LTR MaLR 1 346 0 2 662 2814 55 3 0 chr6 10145223 10145588 -139371449 + ORR1A0-int LTR MaLR 1 366 -1426 2 662 2756 63 28 75 chr6 10145582 10146010 -139371027 - MT2_Mm LTR ERVL -85 408 1 2 662 247 209 95 95 chr6 10146010 10146066 -139370971 - ORR1A3-int LTR MaLR -1350 613 558 2 662 331 139 26 53 chr6 10146048 10146124 -139370913 - ORR1A3-int LTR MaLR -1323 640 567 2 662 15665 50 1 10 chr6 10146124 10148047 -139368990 - MERVL-int LTR ERVL -114 5371 3468 2 662 1532 6 11 0 chr6 10148047 10148228 -139368809 + ORR1A0 LTR MaLR 164 346 0 2 662 1995 190 5 58 chr6 10148230 10148677 -139368360 - L1_Mur2 LINE L1 -5981 1105 683 2 662 2951 281 9 22 chr6 10148670 10149442 -139367595 + Lx5 LINE L1 6284 7045 -5 2 662 198 167 0 0 chr6 10149451 10149487 -139367550 + (TAG)n Simple_repeat Simple_repeat 1 36 0 2 662 460 298 56 16 chr6 10149644 10149770 -139367267 - B1_Mm SINE Alu -7 140 10 2 662 462 353 12 61 chr6 10150175 10150338 -139366699 + LTR16B1 LTR ERVL 1 155 -325 2 662 324 157 54 54 chr6 10151226 10151300 -139365737 - HAL1-3A_ME LINE L1 -809 2049 1976 2 662 1273 0 0 0 chr6 10152579 10152727 -139364310 + L1Md_A LINE L1 6435 6582 0 2 662 226 147 0 0 chr6 10152875 10152908 -139364129 - URR1B DNA MER1_type 0 225 193 2 662 696 224 31 73 chr6 10152908 10153134 -139363903 + ORR1B1 LTR MaLR 1 265 -129 2 662 1610 222 34 12 chr6 10153192 10153572 -139363465 - ORR1B2 LTR MaLR 0 394 5 2 662 5251 109 22 3 chr6 10153719 10154498 -139362539 - L1Md_F2 LINE L1 0 6582 5789 2 662 27516 98 2 9 chr6 10154500 10154513 -139362524 - L1Md_F2 LINE L1 -603 5280 5271 2 662 4034 37 2 0 chr6 10154513 10154998 -139362039 - L1Md_F2 LINE L1 -4 6578 6093 2 662 27516 93 2 8 chr6 10154998 10159655 -139357382 - L1Md_F2 LINE L1 -613 5270 639 2 662 735 144 0 0 chr6 10159651 10159762 -139357275 - L1Md_F2 LINE L1 -6131 507 397 2 662 5600 190 60 28 chr6 10159768 10160927 -139356110 - Lx2B LINE L1 -6 6994 5799 2 662 1973 210 38 11 chr6 10160931 10161383 -139355654 - L1_Mur1 LINE L1 -1659 4218 3755 2 662 2921 96 5 18 chr6 10161385 10161829 -139355208 - L1Md_F2 LINE L1 0 6582 6145 2 662 4454 88 3 2 chr6 10161829 10162725 -139354312 + L1Md_F2 LINE L1 5245 6144 -438 2 662 2831 176 20 10 chr6 10162719 10163328 -139353709 - L1_Mur1 LINE L1 -2108 3778 3164 2 662 26 50 0 0 chr6 10163328 10163368 -139353669 + AT_rich Low_complexity Low_complexity 1 40 0 2 662 2967 93 0 26 chr6 10163386 10163805 -139353232 - L1_Mus1 LINE L1 -1 6566 6159 2 662 4100 142 31 17 chr6 10163824 10165130 -139351907 - L1VL4 LINE L1 -2034 1525 198 2 662 4216 222 44 33 chr6 10165197 10165883 -139351154 - Lx4B LINE L1 -1 7057 6345 2 662 2127 137 40 40 chr6 10165883 10166280 -139350757 - Lx LINE L1 -4 6650 6254 2 662 4216 222 44 33 chr6 10166280 10166585 -139350452 - Lx4B LINE L1 -714 6344 6055 2 662 336 326 0 10 chr6 10167400 10167499 -139349538 + B1F SINE Alu 47 144 -5 2 662 230 260 35 94 chr6 10167511 10167596 -139349441 + ID4_ SINE ID 2 81 -2 2 662 943 218 82 0 chr6 10167615 10167821 -139349216 - Lx6 LINE L1 -471 6989 6767 2 662 195 42 0 0 chr6 10167823 10167847 -139349190 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2 662 3393 68 9 0 chr6 10168602 10169040 -139347997 - L1_Mus1 LINE L1 0 6567 6126 2 662 564 15 0 0 chr6 10169680 10169745 -139347292 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 662 180 111 0 0 chr6 10169745 10169771 -139347266 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 662 8874 147 12 15 chr6 10170119 10172605 -139344432 + Lx LINE L1 4161 6646 -8 2 662 291 259 79 124 chr6 10173108 10173314 -139343723 + MLT1A LTR MaLR 165 389 -1 2 662 659 235 7 0 chr6 10173554 10173690 -139343347 + B1_Mus1 SINE Alu 11 147 -1 2 662 273 208 10 29 chr6 10173868 10173972 -139343065 + (TATG)n Simple_repeat Simple_repeat 3 104 0 2 662 413 358 43 14 chr6 10174051 10174190 -139342847 - B4 SINE B4 -70 222 80 2 662 180 125 0 0 chr6 10174239 10174271 -139342766 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 662 652 271 14 0 chr6 10174271 10174415 -139342622 - B1_Mus2 SINE Alu -1 146 1 2 662 264 330 41 113 chr6 10174415 10174471 -139342566 - B4 SINE B4 -211 81 40 2 662 336 282 28 28 chr6 10174801 10174907 -139342130 - Lx8 LINE L1 -360 7113 7008 2 662 35563 48 0 17 chr6 10175843 10180975 -139336062 + L1Md_T LINE L1 542 5586 -297 2 662 7973 50 11 1 chr6 10180975 10181960 -139335077 + L1Md_T LINE L1 5587 6581 -1 2 662 22 0 0 0 chr6 10182029 10182051 -139334986 + AT_rich Low_complexity Low_complexity 1 22 0 2 662 2150 192 44 51 chr6 10182108 10182673 -139334364 - RLTR31_Mm LTR ERVK 0 561 1 2 662 741 297 65 86 chr6 10182733 10183267 -139333770 + Lx9 LINE L1 6972 7494 -150 2 662 37 0 0 0 chr6 10183381 10183418 -139333619 + AT_rich Low_complexity Low_complexity 1 37 0 2 662 648 251 62 38 chr6 10183424 10183635 -139333402 - B3 SINE B2 0 216 1 2 662 512 15 15 0 chr6 10183680 10183745 -139333292 + (TTTA)n Simple_repeat Simple_repeat 4 69 0 2 662 12907 114 29 5 chr6 10183745 10186769 -139330268 - Lx3_Mus LINE L1 -24 6985 3888 2 662 2870 201 26 2 chr6 10186775 10187359 -139329678 - Lx2 LINE L1 -1 6996 6399 2 662 29 28 0 0 chr6 10187496 10187532 -139329505 + AT_rich Low_complexity Low_complexity 1 36 0 2 662 25 0 0 0 chr6 10187732 10187757 -139329280 + AT_rich Low_complexity Low_complexity 1 25 0 2 662 239 271 42 99 chr6 10187858 10188071 -139328966 + L1MA9 LINE L1 6079 6279 -33 2 662 608 216 37 0 chr6 10188111 10188245 -139328792 - B1_Mur4 SINE Alu -7 143 5 2 662 604 325 147 3 chr6 10188436 10188748 -139328289 - Lx8 LINE L1 -227 7246 6890 2 662 509 304 72 48 chr6 10188859 10189259 -139327778 - L1_Rod LINE L1 -17 5830 5421 2 662 426 294 35 0 chr6 10189247 10189390 -139327647 - Lx6 LINE L1 0 7460 7313 2 662 27 49 0 0 chr6 10189390 10189431 -139327606 + AT_rich Low_complexity Low_complexity 1 41 0 2 662 270 180 20 0 chr6 10189480 10189530 -139327507 - L1_Mur2 LINE L1 -929 4948 4898 2 662 414 39 0 0 chr6 10189535 10189587 -139327450 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 662 517 343 0 0 chr6 10189600 10189737 -139327300 - RSINE1 SINE B4 -26 139 3 2 662 226 280 48 39 chr6 10189982 10190086 -139326951 - L1M2 LINE L1 -901 5239 5135 2 662 322 333 30 20 chr6 10190158 10190357 -139326680 - L1M2 LINE L1 -1103 5040 4840 2 662 38176 9 0 0 chr6 10190577 10195932 -139321105 + L1Md_A LINE L1 232 5585 -298 2 662 8873 9 0 0 chr6 10195934 10196929 -139320108 + L1Md_A LINE L1 5588 6582 0 2 662 898 186 115 30 chr6 10197951 10198151 -139318886 + URR1A DNA MER1_type 1 217 -9 2 662 250 297 112 39 chr6 10198731 10198990 -139318047 - Lx9 LINE L1 -73 7571 7294 2 662 789 271 43 83 chr6 10199450 10199900 -139317137 - RMER6C LTR ERVK -36 720 368 2 662 3934 177 3 5 chr6 10199902 10200636 -139316401 - L1_Mm LINE L1 -722 5161 4430 2 662 5944 165 16 11 chr6 10200636 10201657 -139315380 + Lx LINE L1 5620 6645 -9 2 662 1183 85 11 6 chr6 10201657 10201835 -139315202 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 662 800 106 13 19 chr6 10201849 10202003 -139315034 + (GAAA)n Simple_repeat Simple_repeat 1 153 0 2 662 239 188 28 28 chr6 10202022 10202093 -139314944 + (AACTG)n Simple_repeat Simple_repeat 5 75 0 2 662 1139 198 173 47 chr6 10202095 10202413 -139314624 - RMER6C LTR ERVK -332 358 1 2 662 592 135 18 0 chr6 10202425 10202536 -139314501 + A-rich Low_complexity Low_complexity 3 115 0 2 662 24 67 0 0 chr6 10202643 10202688 -139314349 + AT_rich Low_complexity Low_complexity 1 45 0 2 662 7061 38 1 0 chr6 10202778 10203622 -139313415 - L1Md_T LINE L1 0 6582 5738 2 662 246 258 0 0 chr6 10203744 10203806 -139313231 - MTE-int LTR MaLR -1182 398 337 2 662 227 315 21 52 chr6 10203804 10203901 -139313136 - B3 SINE B2 -3 213 120 2 662 183 114 0 0 chr6 10204077 10204112 -139312925 + (T)n Simple_repeat Simple_repeat 1 35 0 2 662 1151 347 35 14 chr6 10204292 10204921 -139312116 - Lx8 LINE L1 -409 7064 6423 2 662 203 267 0 48 chr6 10205137 10205200 -139311837 + L3 LINE CR1 46 105 -4384 2 662 24 53 0 0 chr6 10205233 10205271 -139311766 + AT_rich Low_complexity Low_complexity 1 38 0 2 662 22 70 0 0 chr6 10205531 10205574 -139311463 + AT_rich Low_complexity Low_complexity 1 43 0 2 662 24 53 0 0 chr6 10205617 10205655 -139311382 + AT_rich Low_complexity Low_complexity 1 38 0 2 662 303 344 85 8 chr6 10206325 10206454 -139310583 + RMER30 DNA MER1_type 63 201 -1 2 662 575 333 22 0 chr6 10207351 10207531 -139309506 + B3 SINE B2 2 185 -31 2 662 21 36 0 0 chr6 10207843 10207871 -139309166 + AT_rich Low_complexity Low_complexity 1 28 0 2 662 26 0 0 0 chr6 10207918 10207944 -139309093 + AT_rich Low_complexity Low_complexity 1 26 0 2 662 201 94 0 0 chr6 10208461 10208493 -139308544 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 662 227 208 54 27 chr6 10208618 10208692 -139308345 + Lx9 LINE L1 7163 7238 -406 2 662 23 54 0 0 chr6 10209325 10209362 -139307675 + AT_rich Low_complexity Low_complexity 1 37 0 2 662 224 122 24 0 chr6 10209430 10209471 -139307566 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 662 1691 245 53 12 chr6 10210280 10210693 -139306344 + RLTR11A LTR ERVK 99 528 0 2 662 227 286 26 9 chr6 10210800 10210913 -139306124 + L1VL1 LINE L1 181 295 -6127 2 662 3075 14 0 0 chr6 10210913 10211265 -139305772 + L1Md_T LINE L1 5234 5585 -298 2 662 8058 52 0 0 chr6 10211267 10212262 -139304775 + L1Md_T LINE L1 5588 6582 0 2 662 34348 68 7 21 chr6 10212289 10217445 -139299592 + L1Md_F3 LINE L1 521 5585 -298 2 662 7614 61 8 8 chr6 10217446 10218444 -139298593 + L1Md_F3 LINE L1 5587 6584 0 2 662 21158 26 0 0 chr6 10218525 10221808 -139295229 - L1Md_T LINE L1 0 6582 3398 2 662 297 0 0 0 chr6 10221812 10221845 -139295192 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 2 662 954 122 0 0 chr6 10221881 10222012 -139295025 + L1_Mm LINE L1 5519 5649 -234 2 662 1263 162 0 17 chr6 10222010 10222242 -139294795 - L1_Mur2 LINE L1 -669 5208 4981 2 662 1113 191 15 77 chr6 10222229 10222501 -139294536 + L1_Mm LINE L1 4738 4992 -891 2 662 2038 148 8 3 chr6 10222499 10222872 -139294165 - L1VL4 LINE L1 -747 2812 2438 2 662 1916 154 18 133 chr6 10222868 10223542 -139293495 - L1VL4 LINE L1 -2521 1038 465 2 663 301 93 18 18 chr6 10223749 10223804 -139293233 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 663 21 0 0 0 chr6 10224564 10224585 -139292452 + AT_rich Low_complexity Low_complexity 1 21 0 3 663 34 65 0 0 chr6 10225359 10225421 -139291616 + AT_rich Low_complexity Low_complexity 1 62 0 3 663 194 128 26 0 chr6 10225421 10225460 -139291577 + (TTA)n Simple_repeat Simple_repeat 2 41 0 3 663 438 20 0 0 chr6 10225728 10225779 -139291258 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 663 1789 153 46 28 chr6 10226225 10226957 -139290080 - RLTR13D3 LTR ERVK -31 1083 1 3 663 386 150 12 0 chr6 10226999 10227079 -139289958 - L1Md_F2 LINE L1 0 6582 6502 3 663 2562 46 0 21 chr6 10227080 10227412 -139289625 - L1_Mus2 LINE L1 -404 6162 5838 3 663 455 0 18 0 chr6 10227413 10227468 -139289569 + (CAA)n Simple_repeat Simple_repeat 2 57 0 3 663 619 349 77 3 chr6 10227751 10228139 -139288898 - Lx8 LINE L1 0 7473 7057 3 663 391 272 191 121 chr6 10228244 10228420 -139288617 + ORR1C2 LTR MaLR 5 194 -190 3 663 492 32 0 0 chr6 10228420 10228482 -139288555 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 3 663 391 272 191 121 chr6 10228482 10228660 -139288377 + ORR1C2 LTR MaLR 195 384 0 3 663 2054 248 80 18 chr6 10228679 10229230 -139287807 + RMER20B LTR ERVK 23 607 -20 3 663 369 312 7 34 chr6 10229234 10229380 -139287657 - Lx7 LINE L1 -839 6857 6716 3 663 407 324 14 0 chr6 10229597 10229742 -139287295 + Lx8 LINE L1 6666 6812 -661 3 663 737 294 85 31 chr6 10230259 10230648 -139286389 - BGLII_B LTR ERVK -27 414 5 3 663 32 26 0 0 chr6 10231453 10231492 -139285545 + AT_rich Low_complexity Low_complexity 1 39 0 3 663 603 40 0 0 chr6 10232117 10232191 -139284846 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 3 663 21 82 0 0 chr6 10232681 10232730 -139284307 + AT_rich Low_complexity Low_complexity 1 49 0 3 663 4382 69 24 122 chr6 10233962 10234719 -139282318 + L1_Mus2 LINE L1 5884 6566 0 3 663 1013 174 99 20 chr6 10234755 10235007 -139282030 - RLTR40 LTR ERVK -525 292 21 3 663 186 150 0 0 chr6 10235009 10235049 -139281988 + (GTTTG)n Simple_repeat Simple_repeat 5 44 0 3 663 443 207 163 16 chr6 10235050 10235173 -139281864 - B1_Mus1 SINE Alu -5 143 3 3 663 1211 188 71 67 chr6 10235252 10235775 -139281262 - RLTR6_Mm LTR ERV1 -70 584 1 3 663 416 297 115 0 chr6 10236291 10236456 -139280581 - Lx8 LINE L1 -1032 6441 6258 3 663 1581 45 0 5 chr6 10236650 10236853 -139280184 - L1Md_F3 LINE L1 -14 6570 6369 3 663 215 263 18 0 chr6 10237319 10237376 -139279661 + (TATG)n Simple_repeat Simple_repeat 2 59 0 3 663 22 35 0 0 chr6 10237819 10237848 -139279189 + AT_rich Low_complexity Low_complexity 1 29 0 3 663 448 320 126 5 chr6 10238454 10238661 -139278376 - Lx9 LINE L1 -595 7049 6818 3 663 24 0 0 0 chr6 10238680 10238704 -139278333 + AT_rich Low_complexity Low_complexity 1 24 0 3 663 32 75 0 0 chr6 10238748 10238815 -139278222 + AT_rich Low_complexity Low_complexity 1 67 0 3 663 296 347 0 10 chr6 10239272 10239371 -139277666 - PB1D9 SINE Alu 0 120 23 3 663 21 36 0 0 chr6 10240410 10240438 -139276599 + AT_rich Low_complexity Low_complexity 1 28 0 3 663 567 269 13 113 chr6 10241284 10241523 -139275514 - B3 SINE B2 0 216 2 3 663 746 181 70 43 chr6 10242615 10242800 -139274237 + B2_Mm2 SINE B2 1 190 -5 3 663 227 21 40 60 chr6 10243075 10243125 -139273912 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 3 663 39 22 0 0 chr6 10243527 10243573 -139273464 + AT_rich Low_complexity Low_complexity 1 46 0 3 663 6329 161 27 94 chr6 10243836 10245211 -139271826 + RLTR21 LTR ERVK 1 1286 -286 3 663 528 16 0 0 chr6 10245211 10245272 -139271765 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 663 333 0 0 0 chr6 10245272 10245308 -139271729 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 663 6329 161 27 94 chr6 10245308 10245319 -139271718 + RLTR21 LTR ERVK 1287 1295 -277 3 663 515 217 58 58 chr6 10247890 10248027 -139269010 + ORR1C2 LTR MaLR 3 139 -235 3 663 3382 272 98 75 chr6 10248021 10248219 -139268818 + ORR1C2-int LTR MaLR 19 189 -1181 3 663 3776 152 32 5 chr6 10248219 10248869 -139268168 + Lx2 LINE L1 6324 6991 -6 3 663 3382 272 98 75 chr6 10248869 10249992 -139267045 + ORR1C2-int LTR MaLR 190 1370 0 3 663 942 236 111 70 chr6 10249992 10250361 -139266676 + ORR1C2 LTR MaLR 1 384 0 3 663 504 48 0 0 chr6 10250400 10250463 -139266574 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 663 315 49 0 0 chr6 10250463 10250503 -139266534 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 663 4389 130 1 38 chr6 10250583 10251302 -139265735 - L1_Mus2 LINE L1 0 6566 5874 3 663 21198 169 16 37 chr6 10251342 10257005 -139260032 - L1_Mus2 LINE L1 -1 6565 1073 3 663 38831 29 0 9 chr6 10257113 10261116 -139255921 - L1Md_T LINE L1 0 6582 2615 3 663 4535 43 2 41 chr6 10261116 10261725 -139255312 + L1Md_T LINE L1 5988 6572 -10 3 663 38831 43 3 8 chr6 10261725 10263967 -139253070 - L1Md_T LINE L1 -3269 2614 422 3 663 556 307 77 23 chr6 10264074 10264389 -139252648 - L1VL2 LINE L1 -5933 402 35 3 663 31 76 0 0 chr6 10264851 10264917 -139252120 + AT_rich Low_complexity Low_complexity 1 66 0 3 663 2959 126 6 13 chr6 10265110 10265578 -139251459 - L1_Mus4 LINE L1 -8 6628 6164 3 663 438 333 21 28 chr6 10265615 10265760 -139251277 - B1_Mur2 SINE Alu 0 149 6 3 663 297 183 0 0 chr6 10265762 10265822 -139251215 + (ATG)n Simple_repeat Simple_repeat 2 61 0 3 663 387 0 0 0 chr6 10266640 10266683 -139250354 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 663 319 364 9 9 chr6 10266687 10266798 -139250239 - ID_B1 SINE B4 -17 207 97 3 663 21 36 0 0 chr6 10267042 10267070 -139249967 + AT_rich Low_complexity Low_complexity 1 28 0 3 663 32 86 0 0 chr6 10267726 10267807 -139249230 + AT_rich Low_complexity Low_complexity 1 81 0 3 663 346 213 75 0 chr6 10268555 10268628 -139248409 - HAL1-3A_ME LINE L1 -785 2073 1994 3 663 561 30 0 0 chr6 10268628 10268695 -139248342 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 663 346 213 75 0 chr6 10268695 10268715 -139248322 - HAL1-3A_ME LINE L1 -865 1993 1974 3 663 567 324 100 35 chr6 10268728 10269179 -139247858 - Lx9 LINE L1 -203 7441 6962 3 663 346 358 45 11 chr6 10269223 10269401 -139247636 + L1MD LINE L1 3963 4146 -2000 3 663 6233 77 4 0 chr6 10269810 10270653 -139246384 - L1_Mm LINE L1 -1314 4569 3724 3 663 305 336 64 7 chr6 10270681 10270822 -139246215 + L1M5 LINE L1 5524 5672 -507 3 663 1303 275 14 17 chr6 10270880 10271337 -139245700 - Lx5 LINE L1 -5 7045 6506 3 663 1162 223 11 18 chr6 10271340 10271619 -139245418 + Lx5 LINE L1 5797 6073 -977 3 663 289 213 0 16 chr6 10271631 10271693 -139245344 + Lx4B LINE L1 6470 6530 -528 3 663 1128 300 43 89 chr6 10271968 10272026 -139245011 - RMER19C LTR ERVK 0 902 863 3 663 893 177 15 15 chr6 10272026 10272221 -139244816 - Lx3A LINE L1 -5 6976 6782 3 663 1134 266 28 80 chr6 10272221 10272892 -139244145 - RMER19C LTR ERVK -40 862 1 3 663 3389 144 5 7 chr6 10274038 10274801 -139242236 - Lx2 LINE L1 -860 6137 5376 3 663 329 318 69 29 chr6 10274953 10275128 -139241909 + ORR1E-int LTR MaLR 2 183 -1397 3 663 25 31 0 0 chr6 10275128 10275160 -139241877 + AT_rich Low_complexity Low_complexity 1 32 0 3 663 250 258 0 0 chr6 10275192 10275258 -139241779 + A-rich Low_complexity Low_complexity 1 66 0 3 663 367 344 110 7 chr6 10275292 10275337 -139241700 + ORR1E-int LTR MaLR 232 290 -1290 3 663 180 0 0 0 chr6 10275337 10275357 -139241680 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 663 367 344 110 7 chr6 10275357 10275466 -139241571 + ORR1E-int LTR MaLR 291 402 -1178 3 663 1147 151 76 68 chr6 10275512 10275654 -139241383 + Lx LINE L1 6380 6535 -119 3 663 183 42 0 0 chr6 10275654 10275678 -139241359 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 3 663 1147 151 76 68 chr6 10275678 10275799 -139241238 + Lx LINE L1 6536 6645 -9 3 663 387 0 0 0 chr6 10275801 10275844 -139241193 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 663 631 335 91 60 chr6 10276159 10276675 -139240362 + ORR1E-int LTR MaLR 872 1549 -31 3 663 253 370 31 49 chr6 10276673 10276835 -139240202 + ORR1E LTR MaLR 55 213 -146 3 663 529 295 67 21 chr6 10277377 10277571 -139239466 + Lx8 LINE L1 6256 6458 -1015 3 663 370 259 71 14 chr6 10277765 10277906 -139239131 + Lx8 LINE L1 6712 6860 -613 3 663 2001 224 19 0 chr6 10278322 10278737 -139238300 + L1_Mur2 LINE L1 326 748 -5964 3 663 10562 92 1 23 chr6 10278738 10281410 -139235627 + L1Md_F LINE L1 101 2714 -3169 3 663 6607 59 11 5 chr6 10281410 10282260 -139234777 - RLTR13A LTR ERVK 0 855 1 3 663 9372 72 10 5 chr6 10282260 10283507 -139233530 + L1Md_F LINE L1 4091 5349 -534 3 663 6206 56 0 6 chr6 10283507 10284295 -139232742 + L1Md_F2 LINE L1 5800 6582 0 3 663 9372 72 10 5 chr6 10284295 10284307 -139232730 + L1Md_F LINE L1 5350 5357 -526 3 663 431 246 78 23 chr6 10285363 10285492 -139231545 - PB1D10 SINE Alu -4 145 10 3 663 343 297 102 0 chr6 10285407 10285535 -139231502 - ID_B1 SINE B4 -47 177 37 3 663 8027 142 88 35 chr6 10285683 10287323 -139229714 + L1_Mur2 LINE L1 1714 3440 -2437 3 663 2660 31 28 0 chr6 10287325 10287643 -139229394 + IAPLTR2b LTR ERVK 1 327 0 3 663 4794 106 79 60 chr6 10287644 10288752 -139228285 + IAPEz-int LTR ERVK 9 995 -5486 3 663 386 70 0 0 chr6 10288752 10288809 -139228228 + B1_Mus1 SINE Alu 1 57 -91 3 663 1901 75 0 0 chr6 10288814 10289054 -139227983 + IAPEY3-int LTR ERVK 2258 2497 -5183 3 663 13751 71 9 6 chr6 10289073 10290873 -139226164 + IAPEz-int LTR ERVK 4676 6481 0 3 663 2437 52 23 0 chr6 10290873 10291183 -139225854 + IAPLTR2b LTR ERVK 1 317 -10 3 663 5803 171 51 13 chr6 10291186 10292391 -139224646 + L1_Mur2 LINE L1 3900 5149 -728 3 663 1233 191 160 17 chr6 10292393 10292681 -139224356 - ORR1A4 LTR MaLR 0 329 1 3 663 2723 205 4 155 chr6 10292681 10292832 -139224205 - ORR1A4-int LTR MaLR 0 1963 1820 3 663 2196 81 0 3 chr6 10292832 10293130 -139223907 + L1_Mus2 LINE L1 6262 6558 -8 3 663 2723 250 41 139 chr6 10293130 10294532 -139222505 - ORR1A4-int LTR MaLR -144 1819 324 3 663 16325 121 30 22 chr6 10294532 10294935 -139222102 - L1_Mur1 LINE L1 -700 5186 4818 3 663 4452 94 7 2 chr6 10294935 10295552 -139221485 - L1_Mus3 LINE L1 -1 6637 6018 3 663 16325 121 30 22 chr6 10295552 10297974 -139219063 - L1_Mur1 LINE L1 -1069 4817 2337 3 663 1421 166 4 0 chr6 10297976 10298211 -139218826 + Lx4A LINE L1 6172 6407 -651 3 663 23 33 0 0 chr6 10298982 10299012 -139218025 + AT_rich Low_complexity Low_complexity 1 30 0 3 663 2861 111 7 21 chr6 10299226 10299659 -139217378 - Lx LINE L1 -80 6574 6148 3 663 271 338 32 90 chr6 10300000 10300156 -139216881 + MER90 LTR ERV1 304 450 -125 3 663 187 373 26 26 chr6 10300699 10300812 -139216225 + MER5B DNA MER1_type 66 178 0 3 663 279 0 0 0 chr6 10300900 10300931 -139216106 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 663 268 111 0 31 chr6 10301496 10301561 -139215476 + (TTTTTG)n Simple_repeat Simple_repeat 2 64 0 3 663 1145 61 0 13 chr6 10301561 10301710 -139215327 - B1_Mus1 SINE Alu 0 148 2 3 663 3234 165 46 53 chr6 10302766 10303412 -139213625 + RLTR26 LTR ERVK 1 642 0 3 663 261 0 0 0 chr6 10305249 10305278 -139211759 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 663 345 144 60 8 chr6 10305278 10305411 -139211626 + (TA)n Simple_repeat Simple_repeat 1 140 0 4 663 375 89 0 0 chr6 10305503 10305559 -139211478 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 663 52 17 0 0 chr6 10305627 10305686 -139211351 + AT_rich Low_complexity Low_complexity 1 59 0 4 663 273 286 25 16 chr6 10305702 10305823 -139211214 - L1MA5 LINE L1 -33 6267 6146 4 663 440 309 22 49 chr6 10306184 10306368 -139210669 - ORR1E LTR MaLR -179 180 2 4 663 22 35 0 0 chr6 10306491 10306520 -139210517 + AT_rich Low_complexity Low_complexity 1 29 0 4 663 24 32 0 0 chr6 10308216 10308247 -139208790 + AT_rich Low_complexity Low_complexity 1 31 0 4 663 203 224 30 0 chr6 10308303 10308370 -139208667 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 663 207 0 0 0 chr6 10308370 10308393 -139208644 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 663 2664 68 0 30 chr6 10308445 10308809 -139208228 - L1_Mus2 LINE L1 -1 6565 6213 4 663 1592 125 39 0 chr6 10308809 10309065 -139207972 + IAPLTR2a LTR ERVK 1 266 -145 4 663 576 56 0 0 chr6 10309065 10309137 -139207900 - IAPEz-int LTR ERVK -6062 419 348 4 663 1312 59 0 0 chr6 10309139 10309314 -139207723 + IAPEz-int LTR ERVK 211 367 -6114 4 663 1972 101 46 18 chr6 10309314 10309832 -139207205 + IAPEz-int LTR ERVK 2 373 -6108 4 663 4591 88 6 2 chr6 10309832 10310460 -139206577 - L1_Mus2 LINE L1 -349 6217 5587 4 663 7341 18 0 0 chr6 10310525 10311347 -139205690 - RLTR13B2 LTR ERVK 0 822 1 4 663 949 151 0 16 chr6 10311910 10312092 -139204945 + GA-rich Low_complexity Low_complexity 2 180 0 4 663 646 283 46 13 chr6 10312343 10312647 -139204390 + L1M4 LINE L1 3670 3983 -2163 4 663 276 30 0 0 chr6 10312726 10312759 -139204278 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 663 225 83 0 0 chr6 10313190 10313226 -139203811 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 4 663 306 0 0 0 chr6 10314332 10314366 -139202671 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 663 310 204 0 0 chr6 10316958 10317012 -139200025 + tRNA-Lys-AAG tRNA tRNA 16 69 -7 4 663 2094 231 38 30 chr6 10317021 10317557 -139199480 - RMER19C LTR ERVK 0 611 2 4 663 1221 82 0 0 chr6 10318437 10318608 -139198429 + (TTC)n Simple_repeat Simple_repeat 2 172 0 4 663 3452 18 5 0 chr6 10319598 10319992 -139197045 + MTA_Mm LTR MaLR 1 396 0 4 663 180 111 0 0 chr6 10320712 10320739 -139196298 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 4 663 3452 165 47 45 chr6 10321232 10321584 -139195453 - RLTR25A LTR ERVK -245 858 514 4 663 215 31 0 30 chr6 10321584 10321617 -139195420 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4 663 3452 165 47 45 chr6 10321617 10321993 -139195044 - RLTR25A LTR ERVK -590 513 130 4 663 538 151 9 9 chr6 10321993 10322100 -139194937 + (CATATA)n Simple_repeat Simple_repeat 6 112 0 4 663 4167 169 33 35 chr6 10322106 10323059 -139193978 - RLTR13A LTR ERVK 0 958 8 4 663 723 104 0 0 chr6 10323059 10323165 -139193872 + (CA)n Simple_repeat Simple_repeat 1 106 0 4 663 293 245 18 140 chr6 10323165 10323188 -139193849 - RLTR13A LTR ERVK -840 118 96 4 663 243 0 0 0 chr6 10323219 10323246 -139193791 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 663 560 198 32 16 chr6 10323246 10323369 -139193668 - RLTR25A LTR ERVK -903 125 1 4 663 24 32 0 0 chr6 10324316 10324347 -139192690 + AT_rich Low_complexity Low_complexity 1 31 0 4 663 607 344 43 21 chr6 10326274 10326553 -139190484 + RMER15 LTR ERVL 275 559 -16 4 663 257 161 16 31 chr6 10327127 10327191 -139189846 - RMER17C LTR ERVK -138 272 210 4 663 698 0 12 0 chr6 10327194 10327276 -139189761 + (GA)n Simple_repeat Simple_repeat 2 84 0 4 663 1775 278 67 22 chr6 10327462 10328085 -139188952 + FordPrefect DNA Tip100 958 1608 -75 4 663 446 315 37 32 chr6 10328076 10328266 -139188771 - B3 SINE B2 -2 214 24 4 663 846 111 89 0 chr6 10328753 10328888 -139188149 + B1_Mm SINE Alu 1 147 0 4 663 3810 71 6 55 chr6 10328927 10329477 -139187560 + L1Md_F2 LINE L1 6060 6582 0 4 663 5124 180 18 5 chr6 10329518 10330464 -139186573 + RMER17B LTR ERVK 1 958 0 4 663 3030 244 86 136 chr6 10330506 10331794 -139185243 - Lx7 LINE L1 0 7696 6473 4 663 2368 243 29 19 chr6 10332348 10333345 -139183692 + Lx5 LINE L1 888 1899 -3981 4 663 2760 201 120 33 chr6 10333353 10334053 -139182984 + Lx4B LINE L1 6298 7058 0 4 663 1435 194 39 3 chr6 10334084 10334389 -139182648 - L1_Mur2 LINE L1 -4 5873 5558 4 663 718 254 20 52 chr6 10334442 10334691 -139182346 - Lx2B LINE L1 -3 6997 6757 4 663 5033 196 80 17 chr6 10334703 10335282 -139181755 - L1_Mur1 LINE L1 -313 5573 5005 4 663 1203 115 15 20 chr6 10335282 10335477 -139181560 - B2_Mm2 SINE B2 -1 194 1 4 663 5033 196 80 17 chr6 10335477 10335567 -139181470 - L1_Mur1 LINE L1 -882 5004 4868 4 663 2419 117 60 8 chr6 10335567 10335947 -139181090 + RLTR9D LTR ERVK 1 400 -3 4 663 5033 196 80 17 chr6 10335947 10336139 -139180898 - L1_Mur1 LINE L1 -1019 4867 4642 4 663 207 0 0 0 chr6 10336139 10336162 -139180875 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 663 5033 196 80 17 chr6 10336162 10336494 -139180543 - L1_Mur1 LINE L1 -1245 4641 4305 4 663 1730 187 41 14 chr6 10336485 10336848 -139180189 + Lx2B LINE L1 6375 6747 -253 4 663 639 142 30 0 chr6 10336867 10337001 -139180036 + Lx5 LINE L1 3212 3349 -2531 4 663 4867 140 22 84 chr6 10337002 10337964 -139179073 + RLTR13D6 LTR ERVK 1 902 0 4 663 1276 194 22 9 chr6 10337977 10338289 -139178748 + Lx5 LINE L1 3374 3661 -2485 4 663 5328 219 66 33 chr6 10338269 10340339 -139176698 + Lx5 LINE L1 4975 7054 -4 4 663 598 310 175 15 chr6 10340344 10340829 -139176208 + Lx5 LINE L1 6494 7050 0 4 663 1759 277 59 79 chr6 10340833 10341537 -139175500 - Lx7 LINE L1 -1213 6483 5798 4 663 481 238 137 8 chr6 10341537 10341668 -139175369 - B1_Mus1 SINE Alu 0 148 1 4 663 1759 277 59 79 chr6 10341668 10341810 -139175227 - Lx7 LINE L1 -1899 5797 5654 4 663 1093 272 27 46 chr6 10341820 10342193 -139174844 - Lx7 LINE L1 -7088 640 275 4 663 1309 320 19 32 chr6 10342483 10343051 -139173986 - Lx9 LINE L1 -596 7048 6488 4 663 355 198 11 90 chr6 10343103 10343192 -139173845 - MTD LTR MaLR -335 84 3 4 663 579 280 47 18 chr6 10343333 10343504 -139173533 + ID_B1 SINE B4 1 176 -48 4 663 737 282 25 21 chr6 10343518 10343801 -139173236 - L1_Rod LINE L1 -289 5558 5275 4 663 850 299 26 43 chr6 10343827 10344246 -139172791 - L1_Rod LINE L1 -815 5032 4621 4 663 2600 127 25 21 chr6 10346118 10346551 -139170486 + L1Md_F2 LINE L1 6148 6582 0 4 663 2367 97 249 28 chr6 10346912 10347378 -139169659 + RLTR6_Mm LTR ERV1 37 605 -49 4 82 67387 15 12 0 chr6 10347378 10355064 -139161973 + RLTR6-int LTR ERV1 1 7778 0 4 664 229 218 194 65 chr6 10355064 10355172 -139161865 + RLTR6_Mm LTR ERV1 1 122 -532 4 664 2220 104 261 27 chr6 10355174 10355618 -139161419 + RLTR6_Mm LTR ERV1 37 584 -70 4 664 360 0 0 0 chr6 10355618 10355658 -139161379 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 664 755 309 57 10 chr6 10355846 10356147 -139160890 - Lx9 LINE L1 -1043 6601 6287 4 664 722 248 142 0 chr6 10356188 10356406 -139160631 + Lx9 LINE L1 6605 6853 -791 4 664 984 195 34 161 chr6 10356663 10357018 -139160019 + Lx9 LINE L1 6819 7128 -516 4 664 1570 239 69 15 chr6 10357101 10357580 -139159457 + Lx9 LINE L1 7139 7643 -1 4 664 22 35 0 0 chr6 10357580 10357609 -139159428 + AT_rich Low_complexity Low_complexity 1 29 0 4 664 31 0 0 0 chr6 10357835 10357866 -139159171 + AT_rich Low_complexity Low_complexity 1 31 0 4 664 2936 161 12 2 chr6 10357965 10358456 -139158581 - Lx2 LINE L1 -4 6993 6498 4 664 35 41 0 0 chr6 10358572 10358621 -139158416 + AT_rich Low_complexity Low_complexity 1 49 0 4 664 1588 185 210 99 chr6 10359312 10359930 -139157107 - RMER6C LTR ERVK 0 690 4 4 664 1349 356 57 48 chr6 10361140 10362128 -139154909 - Lx8 LINE L1 -30 7443 6447 4 664 233 302 22 65 chr6 10362124 10362216 -139154821 + Lx7 LINE L1 6157 6244 -1452 4 664 5002 82 39 1 chr6 10362241 10362939 -139154098 - L1_Mus3 LINE L1 -302 6336 5613 4 664 1806 120 7 52 chr6 10362939 10363246 -139153791 + L1_Mus3 LINE L1 6335 6627 -11 4 664 327 283 10 29 chr6 10363257 10363359 -139153678 + Lx8 LINE L1 6259 6358 -1115 4 664 689 34 11 0 chr6 10363930 10364018 -139153019 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 664 410 194 97 0 chr6 10364252 10364376 -139152661 + Lx9 LINE L1 7503 7638 -6 4 664 351 318 8 23 chr6 10364548 10364680 -139152357 - Lx9 LINE L1 -420 7224 7095 4 664 4243 175 36 13 chr6 10364766 10365593 -139151444 - Lx LINE L1 0 6654 5809 4 664 590 328 47 0 chr6 10365598 10365834 -139151203 - Lx9 LINE L1 -987 6657 6270 4 664 30 0 0 0 chr6 10365900 10365930 -139151107 + AT_rich Low_complexity Low_complexity 1 30 0 4 664 180 0 0 0 chr6 10366973 10366993 -139150044 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 664 1172 198 8 0 chr6 10367015 10367253 -139149784 - Lx2 LINE L1 0 6997 6758 4 664 973 151 139 10 chr6 10367255 10367456 -139149581 - L1_Mur2 LINE L1 -1273 4604 4378 4 664 6585 181 35 14 chr6 10367450 10368118 -139148919 + L1_Mur2 LINE L1 2957 3643 -2234 4 664 204 40 0 0 chr6 10368118 10368143 -139148894 + (CAA)n Simple_repeat Simple_repeat 3 27 0 4 664 6585 181 35 14 chr6 10368143 10368354 -139148683 + L1_Mur2 LINE L1 3644 3866 -2011 4 664 198 0 0 0 chr6 10368354 10368376 -139148661 + (ATTAG)n Simple_repeat Simple_repeat 4 25 0 4 664 6585 181 35 14 chr6 10368376 10368898 -139148139 + L1_Mur2 LINE L1 3867 4388 -1489 4 664 420 271 17 8 chr6 10369208 10369327 -139147710 + Lx9 LINE L1 6804 6923 -721 4 664 1586 236 82 11 chr6 10369448 10369970 -139147067 - Lx9 LINE L1 -2 7642 7084 4 664 912 329 95 34 chr6 10369975 10370567 -139146470 - Lx8 LINE L1 -133 7340 6713 4 664 1304 276 64 77 chr6 10370850 10371318 -139145719 + RLTR18 LTR ERVK 47 508 -108 4 664 191 36 36 0 chr6 10371329 10371357 -139145680 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 664 966 179 114 5 chr6 10371808 10372010 -139145027 - URR1A DNA MER1_type -2 224 1 4 664 326 303 26 35 chr6 10372010 10372123 -139144914 + RLTR18B LTR ERVK 401 512 0 4 664 21 36 0 0 chr6 10372189 10372217 -139144820 + AT_rich Low_complexity Low_complexity 1 28 0 4 664 429 20 0 0 chr6 10372470 10372520 -139144517 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 664 342 0 0 0 chr6 10372964 10373002 -139144035 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 664 619 334 94 38 chr6 10374221 10374560 -139142477 - MTEa LTR MaLR -19 360 3 4 664 2244 126 30 11 chr6 10374704 10375065 -139141972 + RLTR9A LTR ERVK 1 368 0 4 664 501 32 0 0 chr6 10375098 10375161 -139141876 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 664 38 22 0 0 chr6 10375479 10375524 -139141513 + AT_rich Low_complexity Low_complexity 1 45 0 4 664 396 262 43 106 chr6 10375535 10375554 -139141483 - RSINE1 SINE B4 0 165 148 4 664 513 44 0 0 chr6 10375554 10375622 -139141415 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 664 396 262 43 106 chr6 10375622 10375743 -139141294 - RSINE1 SINE B4 -18 147 34 4 664 458 309 82 19 chr6 10376185 10376393 -139140644 - Tigger7 DNA MER2_type -1 2490 2270 5 664 302 316 21 10 chr6 10377510 10377606 -139139431 + Tigger1 DNA MER2_type 28 124 -2294 5 664 327 309 73 0 chr6 10377757 10377880 -139139157 + Tigger1 DNA MER2_type 2282 2413 -5 5 664 270 241 33 54 chr6 10379611 10379703 -139137334 + L1MA5 LINE L1 5696 5785 -506 5 664 26538 82 11 4 chr6 10379762 10384151 -139132886 - L1Md_F2 LINE L1 -1 6581 2158 5 664 736 89 7 15 chr6 10384184 10384321 -139132716 + (TAGA)n Simple_repeat Simple_repeat 4 139 0 5 664 1060 109 0 0 chr6 10384360 10384494 -139132543 + B1_Mus1 SINE Alu 2 135 -13 5 664 315 0 0 0 chr6 10384494 10384529 -139132508 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 5 664 1060 109 0 0 chr6 10384529 10384541 -139132496 + B1_Mus1 SINE Alu 136 147 -1 5 664 249 257 63 21 chr6 10384742 10384885 -139132152 + L1MA5 LINE L1 6146 6294 -6 5 664 333 314 66 22 chr6 10384959 10385096 -139131941 + ID_B1 SINE B4 82 224 0 5 664 1197 55 0 0 chr6 10385404 10385550 -139131487 + B1_Mm SINE Alu 1 146 -1 5 664 324 175 0 0 chr6 10385992 10386055 -139130982 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 664 27 0 0 0 chr6 10386083 10386110 -139130927 + AT_rich Low_complexity Low_complexity 1 27 0 5 664 387 0 0 0 chr6 10386161 10386204 -139130833 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 5 664 268 289 50 50 chr6 10386211 10386291 -139130746 - ID4_ SINE ID -2 81 2 5 664 323 324 102 18 chr6 10386294 10386372 -139130665 - L1M3 LINE L1 -515 5785 5707 5 664 1256 84 6 0 chr6 10386372 10386551 -139130486 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 664 344 306 72 15 chr6 10386551 10386805 -139130232 - L1M3 LINE L1 -594 5706 5426 5 664 481 322 87 24 chr6 10386851 10387230 -139129807 - L1M3 LINE L1 -1218 4925 4523 5 664 199 0 31 31 chr6 10387279 10387311 -139129726 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 664 11576 98 25 17 chr6 10387330 10390223 -139126814 + Lx3_Mus LINE L1 4098 7002 -7 5 664 24 0 0 0 chr6 10390223 10390247 -139126790 + AT_rich Low_complexity Low_complexity 1 24 0 5 664 534 294 67 48 chr6 10390315 10390836 -139126201 - L1M3 LINE L1 -1780 4363 3844 5 664 33 66 0 0 chr6 10390865 10390926 -139126111 + AT_rich Low_complexity Low_complexity 1 61 0 5 664 325 217 18 28 chr6 10391146 10391255 -139125782 - Lx7 LINE L1 -162 7534 7427 5 664 2444 93 9 3 chr6 10391255 10391599 -139125438 + L1_Mus1 LINE L1 6222 6567 0 5 664 387 157 0 0 chr6 10391860 10391930 -139125107 + A-rich Low_complexity Low_complexity 1 70 0 5 664 215 79 0 26 chr6 10392299 10392338 -139124699 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 664 264 257 56 28 chr6 10393328 10393400 -139123637 + ID4_ SINE ID 6 79 -4 5 664 1439 281 45 19 chr6 10394140 10394564 -139122473 - Lx6 LINE L1 -8 7452 7018 5 664 28 71 0 0 chr6 10394619 10394675 -139122362 + AT_rich Low_complexity Low_complexity 1 56 0 5 664 468 344 33 16 chr6 10394688 10394704 -139122333 - B3A SINE B2 -11 187 175 5 664 228 86 0 0 chr6 10394704 10394739 -139122298 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 5 664 468 344 33 16 chr6 10394739 10394905 -139122132 - B3A SINE B2 -24 174 3 5 664 531 45 0 0 chr6 10394984 10395050 -139121987 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 664 423 0 0 0 chr6 10395293 10395340 -139121697 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 664 226 47 0 65 chr6 10395445 10395491 -139121546 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 5 664 355 278 186 39 chr6 10396539 10396872 -139120165 + Arthur1 DNA Tip100 3509 3890 -57 5 664 235 145 0 52 chr6 10396935 10396993 -139120044 + A-rich Low_complexity Low_complexity 2 56 0 5 664 237 33 0 0 chr6 10397429 10397459 -139119578 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 5 664 366 123 0 0 chr6 10398075 10398132 -139118905 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 664 186 43 0 0 chr6 10398132 10398155 -139118882 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 664 201 175 0 0 chr6 10399636 10399676 -139117361 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 664 23 92 0 0 chr6 10400271 10400336 -139116701 + AT_rich Low_complexity Low_complexity 1 65 0 5 664 225 370 72 80 chr6 10401237 10401375 -139115662 - RSINE1 SINE B4 -14 151 15 5 664 955 120 90 103 chr6 10401679 10401912 -139115125 - Lx2 LINE L1 -1 6996 6767 5 664 741 335 92 19 chr6 10402460 10402828 -139114209 - Lx9 LINE L1 -875 6769 6375 5 664 21 0 0 0 chr6 10402857 10402878 -139114159 + AT_rich Low_complexity Low_complexity 1 21 0 5 664 198 71 0 0 chr6 10403109 10403137 -139113900 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 5 664 333 311 60 27 chr6 10403401 10403586 -139113451 + HAL1-3A_ME LINE L1 2282 2472 -386 5 664 205 226 19 0 chr6 10403865 10403918 -139113119 + A-rich Low_complexity Low_complexity 2 55 0 5 664 189 0 0 0 chr6 10404053 10404074 -139112963 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 5 664 700 290 137 13 chr6 10404108 10404562 -139112475 - L1MA6 LINE L1 -36 6264 5755 5 664 210 37 0 0 chr6 10404804 10404831 -139112206 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 664 255 173 0 0 chr6 10405795 10405847 -139111190 + GA-rich Low_complexity Low_complexity 3 54 0 5 664 661 213 201 0 chr6 10406479 10406653 -139110384 + B3 SINE B2 1 209 -7 5 664 273 346 70 84 chr6 10406912 10407054 -139109983 + B3 SINE B2 72 211 -5 5 664 187 364 81 9 chr6 10407693 10407804 -139109233 - MER5B DNA MER1_type -52 126 8 5 664 21 36 0 0 chr6 10408760 10408788 -139108249 + AT_rich Low_complexity Low_complexity 1 28 0 5 664 248 241 13 0 chr6 10408835 10408914 -139108123 + (TA)n Simple_repeat Simple_repeat 1 80 0 5 664 1100 65 0 7 chr6 10409076 10409215 -139107822 + B1_Mm SINE Alu 2 139 -8 5 664 261 0 0 0 chr6 10409224 10409253 -139107784 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 5 664 288 130 0 0 chr6 10409255 10409301 -139107736 + (GGA)n Simple_repeat Simple_repeat 3 48 0 5 664 366 307 176 54 chr6 10409471 10409915 -139107122 + MER67D LTR ERV1 14 511 -3 5 664 294 95 0 0 chr6 10409995 10410037 -139107000 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 5 664 488 16 16 0 chr6 10410111 10410172 -139106865 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 664 185 65 0 31 chr6 10410286 10410318 -139106719 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 664 280 269 101 9 chr6 10410318 10410427 -139106610 - Lx8 LINE L1 -253 7220 7102 5 664 1120 263 103 26 chr6 10410492 10410996 -139106041 + L1_Mur3 LINE L1 3811 4353 -1527 5 664 276 30 0 0 chr6 10411247 10411280 -139105757 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 5 664 27 29 0 0 chr6 10411893 10411927 -139105110 + AT_rich Low_complexity Low_complexity 1 34 0 5 664 1048 104 29 0 chr6 10412178 10412351 -139104686 + L1_Mus3 LINE L1 6458 6635 -3 5 664 24 0 0 0 chr6 10412489 10412513 -139104524 + AT_rich Low_complexity Low_complexity 1 24 0 5 664 287 393 0 35 chr6 10412880 10413025 -139104012 - Lx7 LINE L1 -469 7227 7088 5 664 29 0 0 0 chr6 10414286 10414315 -139102722 + AT_rich Low_complexity Low_complexity 1 29 0 5 664 822 114 106 0 chr6 10414427 10414559 -139102478 + B1_Mus2 SINE Alu 1 146 -1 5 664 296 103 0 0 chr6 10415145 10415184 -139101853 - L1_Mus2 LINE L1 -547 6019 5981 5 664 1728 62 25 12 chr6 10415185 10415430 -139101607 + L1_Mus2 LINE L1 6319 6566 0 5 664 1594 270 14 37 chr6 10415594 10416025 -139101012 - MTC LTR MaLR 0 421 1 5 664 24 53 0 0 chr6 10416145 10416183 -139100854 + AT_rich Low_complexity Low_complexity 1 38 0 5 664 1369 307 15 10 chr6 10416767 10417175 -139099862 + ORR1D2-int LTR MaLR 864 1273 -97 5 664 552 211 8 39 chr6 10417214 10417342 -139099695 + ORR1D2 LTR MaLR 14 137 -233 5 664 191 203 0 17 chr6 10418430 10418490 -139098547 + (CATA)n Simple_repeat Simple_repeat 2 60 0 5 664 206 62 31 0 chr6 10418534 10418566 -139098471 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 664 699 12 0 0 chr6 10419742 10419822 -139097215 + (GA)n Simple_repeat Simple_repeat 1 80 0 5 664 226 220 0 91 chr6 10419847 10419902 -139097135 + MER63D DNA AcHobo 11 60 -1001 5 664 316 316 10 10 chr6 10419884 10419983 -139097054 + MER63D DNA AcHobo 274 372 -689 5 664 32 0 0 0 chr6 10420762 10420794 -139096243 + AT_rich Low_complexity Low_complexity 1 32 0 5 664 378 252 7 22 chr6 10420801 10420939 -139096098 - Lx9 LINE L1 -137 7507 7372 5 664 277 337 184 10 chr6 10420962 10421163 -139095874 - Lx8 LINE L1 -184 7289 7054 5 664 301 324 84 34 chr6 10421266 10421445 -139095592 + HAL1-3A_ME LINE L1 2012 2199 -659 5 664 209 260 0 20 chr6 10421445 10421496 -139095541 + G-rich Low_complexity Low_complexity 4 53 0 5 664 219 158 26 0 chr6 10421457 10421495 -139095542 + GA-rich Low_complexity Low_complexity 1 39 0 5 664 492 329 93 22 chr6 10421497 10421820 -139095217 - Lx8 LINE L1 -506 6967 6622 5 664 1421 197 55 64 chr6 10421865 10422191 -139094846 + ORR1A3 LTR MaLR 1 323 -3 5 664 7746 176 26 69 chr6 10422193 10423865 -139093172 + ORR1A3-int LTR MaLR 1 1599 -364 5 664 1029 278 29 59 chr6 10423998 10424109 -139092928 + Lx7 LINE L1 6729 6820 -876 5 664 1647 226 54 27 chr6 10424109 10424519 -139092518 - MTC LTR MaLR 0 421 1 5 664 1029 278 29 59 chr6 10424519 10424747 -139092290 + Lx7 LINE L1 6821 7057 -639 5 664 979 155 67 5 chr6 10424768 10424963 -139092074 - Lx5 LINE L1 -1117 5933 5727 5 664 4412 86 5 8 chr6 10424989 10425596 -139091441 - L1_Mus2 LINE L1 -2 6564 5960 5 664 55 80 0 0 chr6 10425869 10425994 -139091043 + AT_rich Low_complexity Low_complexity 1 125 0 5 664 428 141 10 20 chr6 10426105 10426206 -139090831 - L1_Mus2 LINE L1 -1 6565 6466 5 664 1555 71 24 0 chr6 10427428 10427638 -139089399 - L1_Mus1 LINE L1 0 6567 6353 5 664 23 33 0 0 chr6 10427774 10427804 -139089233 + AT_rich Low_complexity Low_complexity 1 30 0 5 664 274 266 0 11 chr6 10428000 10428095 -139088942 + RMER17C LTR ERVK 179 272 -138 5 664 2503 179 161 5 chr6 10428266 10428566 -139088471 + RMER6C LTR ERVK 1 348 -342 5 664 936 81 35 0 chr6 10428566 10428740 -139088297 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 664 2503 179 161 5 chr6 10428740 10429036 -139088001 + RMER6C LTR ERVK 349 689 -1 5 664 360 0 0 0 chr6 10429273 10429313 -139087724 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 664 333 0 0 0 chr6 10429313 10429349 -139087688 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 664 1372 329 104 18 chr6 10429483 10430253 -139086784 - Lx8 LINE L1 -216 7257 6422 5 664 402 21 0 0 chr6 10430364 10430411 -139086626 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 664 369 0 0 0 chr6 10430411 10430451 -139086586 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 664 4012 152 28 23 chr6 10430738 10431224 -139085813 - L1_Mur1 LINE L1 -752 5134 4642 6 664 2046 107 23 78 chr6 10431224 10431570 -139085467 - ORR1A2 LTR MaLR 0 327 1 6 664 4012 152 28 23 chr6 10431570 10431863 -139085174 - L1_Mur1 LINE L1 -1245 4641 4351 6 664 3839 219 24 21 chr6 10431861 10432647 -139084390 - L1_Mur1 LINE L1 -3622 2264 1474 6 664 1043 69 7 0 chr6 10432647 10432792 -139084245 + (TTC)n Simple_repeat Simple_repeat 3 148 0 6 664 3544 146 10 32 chr6 10432793 10433416 -139083621 - Lx LINE L1 -11 6643 6035 6 664 3839 221 22 21 chr6 10433416 10433796 -139083241 - L1_Mur1 LINE L1 -4413 1473 1097 6 664 946 76 0 0 chr6 10433796 10433928 -139083109 - L1Md_F2 LINE L1 -11 6571 6440 6 664 2147 226 17 21 chr6 10433928 10434252 -139082785 - L1_Mur1 LINE L1 -5888 1096 770 6 664 285 178 79 40 chr6 10434388 10434464 -139082573 - L1_Mur1 LINE L1 -6231 753 675 6 664 3102 44 2 32 chr6 10436815 10437215 -139079822 - RLTR10 LTR ERVK -2 388 1 6 664 8305 42 0 6 chr6 10437215 10438218 -139078819 - RLTR10-int LTR ERVK -1 1986 990 6 664 515 307 52 52 chr6 10438300 10438723 -139078314 - RLTR10-int LTR ERVK -5987 1594 1172 6 664 6406 57 64 81 chr6 10438748 10439745 -139077292 - RLTR10-int LTR ERVK -995 992 13 6 664 1517 60 25 1 chr6 10439745 10439978 -139077059 - RLTR10 LTR ERVK -62 349 90 6 664 604 72 0 0 chr6 10439985 10440068 -139076969 + RLTR10 LTR ERVK 7 89 -301 6 664 236 131 48 16 chr6 10440154 10440216 -139076821 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 664 281 348 45 0 chr6 10440288 10440377 -139076660 + B3A SINE B2 1 93 -105 6 664 360 94 0 0 chr6 10440424 10440477 -139076560 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 664 286 333 93 36 chr6 10440892 10441085 -139075952 + RMER15 LTR ERVL 372 575 0 6 664 273 29 0 0 chr6 10441304 10441338 -139075699 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 664 492 252 38 64 chr6 10441339 10441496 -139075541 - B3 SINE B2 -58 158 6 6 664 22 0 0 0 chr6 10442139 10442161 -139074876 + AT_rich Low_complexity Low_complexity 1 22 0 6 664 276 284 103 34 chr6 10442300 10442446 -139074591 + MTE2a LTR MaLR 196 351 -28 6 664 274 324 35 21 chr6 10442608 10442750 -139074287 - B1_Mur1 SINE Alu -2 147 4 6 664 428 362 36 41 chr6 10443666 10443885 -139073152 + B4A SINE B4 1 218 -74 6 664 302 202 92 50 chr6 10443895 10444015 -139073022 + Lx9 LINE L1 7514 7638 -6 6 664 433 294 106 35 chr6 10444185 10444411 -139072626 + RMER1A Other Other 184 425 -605 6 664 1621 229 130 0 chr6 10444428 10444843 -139072194 + RMER1B Other Other 594 1062 -4 6 664 185 245 18 153 chr6 10445841 10445952 -139071085 - L4 LINE RTE -1771 258 163 6 664 33 66 0 0 chr6 10447313 10447374 -139069663 + AT_rich Low_complexity Low_complexity 1 61 0 6 664 1651 50 9 9 chr6 10447648 10447868 -139069169 + L1Md_F3 LINE L1 6365 6584 0 6 664 711 327 23 92 chr6 10448164 10448467 -139068570 + B4A SINE B4 11 292 0 6 664 1601 158 20 75 chr6 10448960 10449308 -139067729 + ORR1A4 LTR MaLR 1 329 0 6 664 1695 204 51 14 chr6 10449700 10450053 -139066984 + MTC LTR MaLR 1 366 -55 6 664 1054 302 53 6 chr6 10450994 10451353 -139065684 + Lx9 LINE L1 6589 6964 -680 6 664 6814 48 5 1 chr6 10451363 10452227 -139064810 - L1_Mm LINE L1 -1182 4701 3835 6 664 6790 57 1 0 chr6 10452226 10453088 -139063949 + L1_Mm LINE L1 4733 5595 -288 6 664 2852 57 0 0 chr6 10453088 10453442 -139063595 + L1Md_F3 LINE L1 5232 5585 -298 6 664 7994 45 8 1 chr6 10453443 10454434 -139062603 + L1Md_F3 LINE L1 5587 6584 0 6 664 470 301 204 9 chr6 10454508 10454827 -139062210 + Lx9 LINE L1 7052 7432 -212 6 664 33 80 0 0 chr6 10454984 10455059 -139061978 + AT_rich Low_complexity Low_complexity 1 75 0 6 664 28 29 0 0 chr6 10456191 10456226 -139060811 + AT_rich Low_complexity Low_complexity 1 35 0 6 664 23 0 0 0 chr6 10457128 10457151 -139059886 + AT_rich Low_complexity Low_complexity 1 23 0 6 664 361 291 161 81 chr6 10459039 10459200 -139057837 + MLT1E1 LTR MaLR 428 601 -53 6 664 1201 156 24 0 chr6 10459564 10459775 -139057262 - Lx LINE L1 -5 6649 6434 6 664 1531 176 4 7 chr6 10459775 10460050 -139056987 + L1_Mur1 LINE L1 4478 4751 -1135 6 664 635 35 12 0 chr6 10460421 10460507 -139056530 + (TAGA)n Simple_repeat Simple_repeat 3 89 0 6 664 34 42 0 0 chr6 10460514 10460562 -139056475 + AT_rich Low_complexity Low_complexity 1 48 0 6 664 210 150 0 0 chr6 10461361 10461401 -139055636 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 664 378 233 96 40 chr6 10461719 10461785 -139055252 - RLTR20A LTR ERVK -25 509 444 6 664 450 0 0 0 chr6 10461785 10461835 -139055202 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 664 378 233 96 40 chr6 10461835 10461893 -139055144 - RLTR20A LTR ERVK -91 443 378 6 664 356 364 56 84 chr6 10461944 10462157 -139054880 + B4A SINE B4 34 240 -52 6 664 1124 265 101 35 chr6 10462597 10462965 -139054072 - RLTR20A LTR ERVK -149 392 1 6 664 2179 122 220 26 chr6 10463056 10463525 -139053512 - RLTR6_Mm LTR ERV1 -58 596 37 6 664 26165 126 20 12 chr6 10463744 10466846 -139050191 - L1_Mus3 LINE L1 -7 6631 3479 6 664 321 26 0 0 chr6 10466846 10466884 -139050153 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 6 664 26165 156 22 17 chr6 10466884 10470017 -139047020 - L1_Mus3 LINE L1 -2405 3478 367 6 664 5758 83 3 3 chr6 10470118 10470892 -139046145 - L1_Mus1 LINE L1 -3 6564 5791 6 664 3646 186 27 16 chr6 10471412 10472149 -139044888 + RMER6A LTR ERVK 6 750 -6 6 664 1369 240 228 36 chr6 10472373 10472755 -139044282 + RMER6C LTR ERVK 1 497 -193 6 664 306 0 0 0 chr6 10472755 10472789 -139044248 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 664 1369 251 169 117 chr6 10472789 10473174 -139043863 + RMER6C LTR ERVK 418 716 -4 6 664 228 377 8 66 chr6 10473278 10473400 -139043637 - RSINE1 SINE B4 -33 132 18 6 664 25 31 0 0 chr6 10473470 10473502 -139043535 + AT_rich Low_complexity Low_complexity 1 32 0 6 664 16577 111 9 5 chr6 10473593 10476242 -139040795 - Lx3_Mus LINE L1 -995 6014 3369 6 664 20802 130 19 1 chr6 10476243 10480217 -139036820 + L1Md_F LINE L1 476 4523 -1360 6 664 8076 116 96 1 chr6 10480209 10481972 -139035065 - Lx3_Mus LINE L1 -3269 2617 659 6 664 493 262 101 133 chr6 10481973 10482409 -139034628 - Lx3_Mus LINE L1 -6526 458 37 6 664 24 0 0 0 chr6 10482871 10482895 -139034142 + AT_rich Low_complexity Low_complexity 1 24 0 6 664 799 175 0 98 chr6 10482936 10483139 -139033898 - Lx2 LINE L1 -792 5094 4912 6 664 3769 184 18 45 chr6 10483137 10483448 -139033589 + Lx2 LINE L1 5081 5381 -505 6 664 4158 31 0 4 chr6 10483448 10483940 -139033097 + L1Md_F2 LINE L1 6085 6574 -8 6 664 7609 166 23 27 chr6 10483940 10485580 -139031457 + Lx2 LINE L1 5382 6997 0 6 665 384 103 0 0 chr6 10486265 10486323 -139030714 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 665 1038 136 0 0 chr6 10487977 10488124 -139028913 + B1_Mus1 SINE Alu 2 148 0 6 665 301 250 15 0 chr6 10488128 10488196 -139028841 + L1MC1 LINE L1 2034 2102 -4140 6 665 316 279 47 13 chr6 10488313 10488462 -139028575 + L1MC1 LINE L1 5147 5300 -846 6 665 1979 127 6 9 chr6 10488538 10488855 -139028182 + IAPLTR2b LTR ERVK 1 316 -11 6 665 22 35 0 0 chr6 10488994 10489023 -139028014 + AT_rich Low_complexity Low_complexity 1 29 0 6 665 225 311 129 0 chr6 10489071 10489203 -139027834 + L1MC1 LINE L1 5672 5820 -524 6 665 455 371 34 34 chr6 10489216 10489493 -139027544 + B4A SINE B4 13 289 -3 6 665 404 319 43 14 chr6 10489687 10489894 -139027143 + L1MC1 LINE L1 5994 6206 -127 6 665 287 236 121 8 chr6 10491334 10491365 -139025672 + Lx9 LINE L1 7448 7478 -166 6 665 441 0 0 0 chr6 10491365 10491414 -139025623 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 665 287 236 121 8 chr6 10491414 10491506 -139025531 + Lx9 LINE L1 7479 7584 -60 6 665 3160 269 63 26 chr6 10491549 10492699 -139024338 + Lx7 LINE L1 5598 6790 -906 6 665 1272 185 24 4 chr6 10492712 10492961 -139024076 - Lx LINE L1 -8 6646 6393 6 665 2017 138 59 89 chr6 10492961 10493366 -139023671 + RLTR9C LTR ERVK 1 393 0 6 665 390 183 27 55 chr6 10493368 10493478 -139023559 + ETnERV2-int LTR ERVK 2 108 -4736 6 665 3655 190 52 85 chr6 10493503 10494028 -139023009 + ETnERV2-int LTR ERVK 108 597 -4247 6 665 3622 52 103 54 chr6 10494028 10494562 -139022475 - LTRIS2 LTR ERV1 0 564 5 6 665 3655 190 52 85 chr6 10494562 10495147 -139021890 + ETnERV2-int LTR ERVK 598 1182 -3662 6 665 316 257 14 0 chr6 10495168 10495238 -139021799 + ETnERV2-int LTR ERVK 2500 2570 -4836 6 665 5238 94 4 10 chr6 10495240 10496010 -139021027 - L1_Mm LINE L1 -1251 4632 3868 6 665 5218 66 0 0 chr6 10496007 10496674 -139020363 + L1Md_F2 LINE L1 4919 5585 -298 6 665 7257 88 5 3 chr6 10496675 10497665 -139019372 + L1Md_F2 LINE L1 5587 6578 -4 6 665 666 0 0 0 chr6 10497669 10497743 -139019294 + (GAA)n Simple_repeat Simple_repeat 2 75 0 6 665 2090 168 18 20 chr6 10497756 10498152 -139018885 + ETnERV2-int LTR ERVK 2576 2970 -4436 6 665 3881 178 36 34 chr6 10498449 10500000 -139017037 + ETnERV2-int LTR ERVK 2356 4085 -3321 6 665 1256 194 21 40 chr6 10500000 10500476 -139016561 + ETnERV2-int LTR ERVK 6213 6422 -984 1 665 433 97 0 89 chr6 10500694 10500773 -139016264 + ETnERV2-int LTR ERVK 7331 7402 -4 1 665 2102 136 60 78 chr6 10500778 10501178 -139015859 + RLTR9C LTR ERVK 1 393 0 1 665 887 153 0 7 chr6 10501178 10501329 -139015708 - Lx LINE L1 -256 6398 6249 2 665 2572 178 12 7 chr6 10501346 10501909 -139015128 + Lx3B LINE L1 5414 5977 -996 3 665 677 217 0 0 chr6 10501904 10502033 -139015004 + Lx3B LINE L1 6089 6217 -780 3 665 5012 113 16 0 chr6 10502148 10502903 -139014134 + L1_Mus4 LINE L1 5869 6635 -1 4 665 5138 247 36 15 chr6 10502903 10505260 -139011777 - Lx7 LINE L1 -783 6913 4516 5 665 721 224 0 0 chr6 10505262 10505409 -139011628 - Lx7 LINE L1 -1515 4365 4219 5 665 312 265 53 3 chr6 10505448 10505572 -139011465 - L1M2 LINE L1 -929 5214 5082 6 665 35394 58 2 1 chr6 10505991 10511271 -139005766 - L1Md_F3 LINE L1 0 6584 1302 7 665 24624 28 4 1 chr6 10511270 10514888 -139002149 - L1Md_T LINE L1 0 6582 2953 8 665 8877 12 0 0 chr6 10514894 10516123 -139000914 - L1Md_T LINE L1 0 6582 5354 9 665 14356 41 9 14 chr6 10516122 10518708 -138998329 - L1Md_T LINE L1 -2901 2982 415 8 665 204 40 0 0 chr6 10518708 10518733 -138998304 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 665 3665 98 35 16 chr6 10519089 10519658 -138997379 - RLTR13D1 LTR ERVK 0 806 227 1 665 2892 133 60 19 chr6 10519639 10520151 -138996886 - RLTR13D1 LTR ERVK -369 533 1 1 665 22 35 0 0 chr6 10521529 10521558 -138995479 + AT_rich Low_complexity Low_complexity 1 29 0 1 665 290 357 41 41 chr6 10521814 10521960 -138995077 + B4 SINE B4 1 146 -146 1 665 201 74 0 0 chr6 10522013 10522040 -138994997 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 665 28 29 0 0 chr6 10522209 10522244 -138994793 + AT_rich Low_complexity Low_complexity 1 35 0 1 665 434 219 34 26 chr6 10522255 10522372 -138994665 - B1_Mus1 SINE Alu -29 119 2 1 665 24 53 0 0 chr6 10522422 10522460 -138994577 + AT_rich Low_complexity Low_complexity 1 38 0 1 665 2009 198 58 91 chr6 10522535 10523086 -138993951 + RMER16 LTR ERVK 1 533 0 1 665 334 183 0 0 chr6 10523655 10523715 -138993322 + Lx2B LINE L1 5799 5858 -1142 1 665 284 301 68 123 chr6 10523723 10523886 -138993151 + RMER20A LTR ERVK 1 154 -362 2 665 1855 130 9 0 chr6 10523911 10524226 -138992811 + L1_Mur1 LINE L1 2980 3297 -2589 2 665 360 381 7 14 chr6 10525383 10525524 -138991513 + B3A SINE B2 34 173 -25 2 665 396 103 0 0 chr6 10525527 10525585 -138991452 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 665 1164 254 72 29 chr6 10525641 10525989 -138991048 - ORR1D1 LTR MaLR -6 368 6 2 665 1444 265 89 102 chr6 10525994 10526262 -138990775 - ORR1D1-int LTR MaLR 0 1370 1101 2 665 1091 58 7 0 chr6 10526262 10526399 -138990638 + B1_Mus1 SINE Alu 1 138 -10 2 665 1444 265 89 102 chr6 10526399 10526668 -138990369 - ORR1D1-int LTR MaLR -270 1100 840 2 665 3034 130 4 6 chr6 10526691 10527163 -138989874 + L1_Mus4 LINE L1 6163 6633 -3 2 665 235 258 53 11 chr6 10527166 10527260 -138989777 + L1M4 LINE L1 4422 4519 -1627 2 665 1089 217 23 0 chr6 10527286 10527503 -138989534 + RLTR20A LTR ERVK 318 539 -2 2 665 376 324 128 28 chr6 10527608 10527929 -138989108 - BLACKJACK DNA AcHobo -1596 1348 996 2 665 36556 27 1 9 chr6 10528013 10533197 -138983840 + L1Md_T LINE L1 450 5586 -297 3 665 8161 45 1 0 chr6 10533197 10534192 -138982845 + L1Md_T LINE L1 5587 6582 0 3 665 558 247 182 0 chr6 10534206 10534360 -138982677 + MLT1A0 LTR MaLR 184 365 0 3 665 183 114 0 0 chr6 10534378 10534413 -138982624 + (A)n Simple_repeat Simple_repeat 1 35 0 3 665 6491 44 7 4 chr6 10534600 10535407 -138981630 - L1Md_F2 LINE L1 -3 6579 5770 3 665 3393 20 0 2 chr6 10535407 10535801 -138981236 + L1Md_T LINE L1 5194 5586 -297 3 665 8154 45 1 0 chr6 10535801 10536795 -138980242 + L1Md_T LINE L1 5587 6581 -1 3 665 558 247 182 0 chr6 10536809 10536963 -138980074 + MLT1A0 LTR MaLR 184 365 0 3 665 183 114 0 0 chr6 10536981 10537016 -138980021 + (A)n Simple_repeat Simple_repeat 1 35 0 3 665 6491 44 7 4 chr6 10537203 10538010 -138979027 - L1Md_F2 LINE L1 -3 6579 5770 3 665 4692 34 0 14 chr6 10538010 10538432 -138978605 + L1_Mm LINE L1 5194 5608 -275 3 665 2117 133 14 38 chr6 10538432 10538798 -138978239 + IAPEY2_LTR LTR ERVK 1 357 0 3 665 4692 34 0 14 chr6 10538798 10538947 -138978090 + L1_Mm LINE L1 5609 5757 -126 3 665 1169 294 6 26 chr6 10540700 10541042 -138975995 - Lx6 LINE L1 -92 7368 7034 4 665 8787 197 40 6 chr6 10542606 10544878 -138972159 + L1_Mur1 LINE L1 864 3213 -2673 4 665 204 40 0 0 chr6 10544881 10544906 -138972131 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 665 11297 51 8 2 chr6 10544906 10547030 -138970007 - L1Md_F3 LINE L1 -19 6565 4426 4 665 5072 57 1 0 chr6 10547028 10547683 -138969354 + L1Md_F3 LINE L1 3771 4426 -1457 4 665 5686 187 13 86 chr6 10547679 10547899 -138969138 + L1_Mur1 LINE L1 3202 3338 -2548 4 665 3609 111 16 7 chr6 10547899 10548445 -138968592 + L1_Mus3 LINE L1 6083 6633 -5 4 665 5897 180 11 26 chr6 10548445 10549671 -138967366 + L1_Mur1 LINE L1 3330 4543 -1343 4 665 877 251 73 8 chr6 10549669 10549930 -138967107 + Lx3C LINE L1 6697 6974 -2 4 665 1077 114 86 0 chr6 10549952 10550127 -138966910 + B2_Mm1t SINE B2 3 192 -1 4 665 405 0 0 0 chr6 10550605 10550650 -138966387 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 665 4317 76 3 2 chr6 10550825 10551402 -138965635 + L1_Mus2 LINE L1 5988 6565 -1 4 665 926 280 31 11 chr6 10551608 10551868 -138965169 + Lx7 LINE L1 6823 7087 -609 4 665 525 371 0 0 chr6 10552238 10552389 -138964648 - RSINE1 SINE B4 -3 162 12 5 665 57 61 0 0 chr6 10552667 10552766 -138964271 + AT_rich Low_complexity Low_complexity 1 99 0 5 665 1356 75 21 0 chr6 10553984 10554171 -138962866 - B2_Mm1t SINE B2 -1 192 2 5 665 405 327 0 0 chr6 10554721 10554828 -138962209 - B1_Mur1 SINE Alu -42 107 1 5 665 223 374 8 50 chr6 10554828 10554842 -138962195 - ID_B1 SINE B4 -39 185 70 5 665 706 254 208 45 chr6 10555573 10555886 -138961151 - ORR1D1 LTR MaLR -14 364 1 5 665 26 30 0 0 chr6 10555989 10556022 -138961015 + AT_rich Low_complexity Low_complexity 1 33 0 5 665 30 27 0 0 chr6 10557104 10557141 -138959896 + AT_rich Low_complexity Low_complexity 1 37 0 5 665 32 0 0 0 chr6 10557382 10557414 -138959623 + AT_rich Low_complexity Low_complexity 1 32 0 5 665 180 0 0 0 chr6 10557890 10557910 -138959127 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 665 967 122 0 26 chr6 10557948 10558100 -138958937 + B1_Mus1 SINE Alu 1 148 0 6 665 217 132 0 0 chr6 10558100 10558138 -138958899 + (A)n Simple_repeat Simple_repeat 1 38 0 6 665 274 352 35 7 chr6 10558336 10558479 -138958558 + Lx8 LINE L1 7049 7195 -278 6 665 23 97 0 0 chr6 10558967 10559039 -138957998 + AT_rich Low_complexity Low_complexity 1 72 0 6 665 689 239 94 20 chr6 10559303 10559504 -138957533 - B3 SINE B2 0 216 1 6 665 1981 185 151 22 chr6 10560080 10560523 -138956514 - RMER19B LTR ERVK 0 902 399 6 665 459 0 0 0 chr6 10560523 10560574 -138956463 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 665 1981 185 151 22 chr6 10560574 10560594 -138956443 - RMER19B LTR ERVK -504 398 379 6 665 247 136 0 22 chr6 10560585 10560630 -138956407 - RMER19B LTR ERVK -770 132 89 6 665 1520 149 23 36 chr6 10560630 10560936 -138956101 - Lx4A LINE L1 -954 6104 5803 6 665 2643 130 58 5 chr6 10560934 10561382 -138955655 + Lx4A LINE L1 5302 5773 -104 6 665 184 30 61 0 chr6 10562039 10562072 -138954965 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 665 507 152 36 18 chr6 10562660 10562827 -138954210 + (TA)n Simple_repeat Simple_repeat 2 171 0 6 665 501 58 0 0 chr6 10563069 10563138 -138953899 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 7 665 865 59 0 0 chr6 10563139 10563257 -138953780 - B1_Mus1 SINE Alu -29 119 2 7 665 207 0 0 0 chr6 10563386 10563409 -138953628 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 665 395 343 58 6 chr6 10563633 10563806 -138953231 + B3A SINE B2 1 182 -16 7 665 251 172 29 59 chr6 10563808 10563876 -138953161 + (CATA)n Simple_repeat Simple_repeat 3 68 0 7 665 28 0 0 0 chr6 10563876 10563904 -138953133 + AT_rich Low_complexity Low_complexity 1 28 0 7 665 399 280 145 14 chr6 10564090 10564235 -138952802 + ORR1E LTR MaLR 6 169 -190 7 665 497 235 8 8 chr6 10565485 10565605 -138951432 + RMER15 LTR ERVL 370 489 -86 7 665 21 71 0 0 chr6 10566609 10566651 -138950386 + AT_rich Low_complexity Low_complexity 1 42 0 7 665 22 35 0 0 chr6 10566781 10566810 -138950227 + AT_rich Low_complexity Low_complexity 1 29 0 7 665 29 90 0 0 chr6 10568685 10568763 -138948274 + AT_rich Low_complexity Low_complexity 1 78 0 8 665 225 196 0 0 chr6 10568865 10568916 -138948121 + (TA)n Simple_repeat Simple_repeat 1 51 0 8 665 258 211 47 19 chr6 10568935 10569041 -138947996 + (TA)n Simple_repeat Simple_repeat 1 109 0 8 665 5376 70 7 12 chr6 10569151 10569177 -138947860 + L1_Mus2 LINE L1 5845 5870 -696 8 665 207 0 0 0 chr6 10569177 10569200 -138947837 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 665 5376 70 7 12 chr6 10569200 10569898 -138947139 + L1_Mus2 LINE L1 5871 6564 -2 8 665 28 0 0 0 chr6 10569898 10569926 -138947111 + AT_rich Low_complexity Low_complexity 1 28 0 8 665 5755 168 38 22 chr6 10569973 10571084 -138945953 - Lx2 LINE L1 -6 6991 5863 8 665 745 119 0 27 chr6 10571124 10571236 -138945801 + B1_Mm SINE Alu 1 109 -38 8 665 1121 274 69 8 chr6 10571499 10571892 -138945145 - Tigger1 DNA MER2_type -748 1670 1254 8 665 1328 315 95 21 chr6 10572059 10572720 -138944317 - Tigger1 DNA MER2_type -1403 1015 306 8 665 379 270 53 207 chr6 10572802 10573068 -138943969 + ORR1E LTR MaLR 83 307 -52 8 665 246 62 0 0 chr6 10573273 10573305 -138943732 + (T)n Simple_repeat Simple_repeat 1 32 0 8 665 37466 47 1 3 chr6 10573370 10579805 -138937232 - L1Md_T LINE L1 0 6585 69 9 665 23 0 0 0 chr6 10580681 10580704 -138936333 + AT_rich Low_complexity Low_complexity 1 23 0 9 665 23941 52 21 21 chr6 10580846 10583320 -138933717 + L1_Mm LINE L1 2394 4917 -966 9 665 236 167 46 77 chr6 10583320 10583385 -138933652 - RMER20A LTR ERVK -268 248 186 9 665 23941 52 21 21 chr6 10583385 10584038 -138932999 + L1_Mm LINE L1 4918 5585 -298 9 665 7620 51 24 6 chr6 10584040 10585018 -138932019 + L1Md_F2 LINE L1 5588 6582 0 9 665 24 32 0 0 chr6 10585185 10585216 -138931821 + AT_rich Low_complexity Low_complexity 1 31 0 9 665 422 264 77 9 chr6 10585306 10585449 -138931588 + RMER20B LTR ERVK 3 163 -353 9 665 6266 113 35 13 chr6 10586957 10587534 -138929503 + Lx3_Mus LINE L1 5989 6586 -423 9 665 4705 129 25 99 chr6 10587534 10588513 -138928524 - RMER17A2 LTR ERVK 0 906 1 9 665 6266 113 35 13 chr6 10588513 10588926 -138928111 + Lx3_Mus LINE L1 6587 7001 -8 9 665 393 372 78 83 chr6 10589276 10589684 -138927353 - MLT1E2 LTR MaLR -156 471 66 9 665 186 200 64 43 chr6 10589771 10589818 -138927219 + L2 LINE L2 2427 2474 -945 1 665 367 292 59 134 chr6 10589958 10590144 -138926893 - B3A SINE B2 -21 174 3 1 665 1411 225 161 12 chr6 10590570 10590899 -138926138 + RLTR30 LTR ERV1 1 378 -1 1 665 273 250 26 0 chr6 10591076 10591152 -138925885 + L1MA9 LINE L1 5858 5935 -377 1 665 33 43 0 0 chr6 10591187 10591234 -138925803 + AT_rich Low_complexity Low_complexity 1 47 0 1 665 357 24 0 0 chr6 10591240 10591282 -138925755 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 665 405 0 0 0 chr6 10591282 10591326 -138925711 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 665 22 0 0 0 chr6 10591560 10591582 -138925455 + AT_rich Low_complexity Low_complexity 1 22 0 1 665 192 77 0 0 chr6 10592022 10592048 -138924989 + (T)n Simple_repeat Simple_repeat 1 26 0 1 665 696 24 0 0 chr6 10592209 10592291 -138924746 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1 665 1031 90 0 7 chr6 10592291 10592436 -138924601 - B1_Mus2 SINE Alu -3 144 1 1 665 798 264 168 30 chr6 10592539 10592902 -138924135 + MTD LTR MaLR 1 413 -6 1 665 991 312 20 96 chr6 10594050 10594444 -138922593 - ORR1D1 LTR MaLR -10 364 1 1 665 306 281 126 65 chr6 10595090 10595337 -138921700 + L1MEg LINE L1 1224 1485 -4599 1 665 315 335 33 81 chr6 10595570 10595905 -138921132 + L1M2 LINE L1 3800 4118 -2025 1 665 393 295 109 39 chr6 10595915 10596144 -138920893 + L1M2 LINE L1 4293 4537 -1606 1 665 471 73 0 0 chr6 10596224 10596292 -138920745 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 665 790 319 157 46 chr6 10596672 10597258 -138919779 + Lx9 LINE L1 6791 7441 -203 1 665 297 0 0 0 chr6 10597290 10597323 -138919714 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 665 513 353 21 21 chr6 10597623 10597817 -138919220 + B3A SINE B2 2 195 -3 1 665 3528 168 22 16 chr6 10598218 10598864 -138918173 - Lx3A LINE L1 -5 6976 6327 1 665 1357 140 49 0 chr6 10598867 10599110 -138917927 + Lx3A LINE L1 6024 6278 -703 1 665 2890 147 21 36 chr6 10599784 10600313 -138916724 + Lx2 LINE L1 6477 6997 0 1 665 11886 125 28 14 chr6 10600324 10602912 -138914125 + Lx3_Mus LINE L1 272 3249 -2637 1 665 1694 53 52 4 chr6 10602912 10603141 -138913896 + L1Md_F3 LINE L1 6345 6584 0 1 665 11886 204 19 102 chr6 10603141 10603907 -138913130 + Lx3_Mus LINE L1 3217 3752 -2125 1 665 7456 68 3 1 chr6 10603960 10604914 -138912123 + L1Md_F2 LINE L1 5604 6559 -23 1 665 495 0 0 0 chr6 10604916 10604971 -138912066 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 665 12219 115 48 24 chr6 10604984 10605227 -138911810 + Lx3_Mus LINE L1 3775 4020 -1866 1 665 2156 118 8 139 chr6 10605227 10605700 -138911337 - RLTR9F LTR ERVK -4 411 1 1 665 12219 115 48 24 chr6 10605700 10606938 -138910099 + Lx3_Mus LINE L1 4021 5271 -615 1 665 213 39 0 0 chr6 10606938 10606964 -138910073 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 665 12219 115 48 24 chr6 10606964 10607447 -138909590 + Lx3_Mus LINE L1 5272 5777 -109 1 665 1615 74 0 9 chr6 10607447 10607666 -138909371 + L1Md_F2 LINE L1 6354 6570 -12 1 665 12219 97 54 5 chr6 10607666 10608065 -138908972 + Lx3_Mus LINE L1 5776 6203 -806 1 665 3118 124 20 8 chr6 10608065 10608566 -138908471 + RLTR1C LTR ERV1 1 564 0 1 665 4793 122 28 23 chr6 10608566 10609354 -138907683 + Lx3_Mus LINE L1 6201 6992 -17 1 665 25 0 0 0 chr6 10609379 10609404 -138907633 + AT_rich Low_complexity Low_complexity 1 25 0 1 665 277 397 77 22 chr6 10609697 10609880 -138907157 + MER20 DNA MER1_type 26 218 -1 1 665 316 248 14 0 chr6 10610086 10610169 -138906868 + MTE2b LTR MaLR 1 84 -295 1 665 5195 224 35 14 chr6 10610185 10611426 -138905611 - Lx2B LINE L1 -7 6993 5728 1 665 722 302 71 30 chr6 10611426 10611692 -138905345 + MTE2b LTR MaLR 43 319 -60 1 665 497 280 31 23 chr6 10612082 10612210 -138904827 + RSINE1 SINE B4 2 130 -35 1 665 291 140 0 0 chr6 10612231 10612281 -138904756 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1 665 218 32 32 0 chr6 10612311 10612342 -138904695 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 1 665 3404 83 16 24 chr6 10612609 10613101 -138903936 - L1_Mus1 LINE L1 -1 6566 6079 1 665 3479 88 9 0 chr6 10613101 10613821 -138903216 + L1_Mus1 LINE L1 5359 6083 -484 1 665 621 123 16 24 chr6 10614622 10614747 -138902290 + CT-rich Low_complexity Low_complexity 3 126 0 1 665 704 304 9 5 chr6 10615394 10615609 -138901428 - B3 SINE B2 0 216 1 1 665 25 65 0 0 chr6 10615679 10615725 -138901312 + AT_rich Low_complexity Low_complexity 1 46 0 1 666 4698 155 28 1 chr6 10617416 10618261 -138898776 + Lx2 LINE L1 5730 6597 -400 1 666 992 194 5 0 chr6 10618277 10618463 -138898574 + Lx2 LINE L1 6810 6996 -1 1 666 874 298 54 33 chr6 10618464 10618797 -138898240 - MTD LTR MaLR -28 391 52 1 666 224 283 0 0 chr6 10619730 10619783 -138897254 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 666 2957 134 44 11 chr6 10620935 10621485 -138895552 - Lx2 LINE L1 -416 6581 6014 1 666 1381 131 37 4 chr6 10621480 10621726 -138895311 + Lx2 LINE L1 5765 6018 -979 1 666 38463 18 2 6 chr6 10622293 10628501 -138888536 - L1Md_A LINE L1 -1 6581 405 1 666 26 0 0 0 chr6 10629724 10629750 -138887287 + AT_rich Low_complexity Low_complexity 1 26 0 1 666 2640 228 52 5 chr6 10629804 10630422 -138886615 - Lx5 LINE L1 -42 7008 6362 1 666 5182 205 45 14 chr6 10630453 10632023 -138885014 - Lx5 LINE L1 -931 6119 4495 1 666 1198 205 53 13 chr6 10632101 10632471 -138884566 + L1_Mur2 LINE L1 884 1287 -5697 1 666 1872 209 23 52 chr6 10632494 10632951 -138884086 + L1_Mur2 LINE L1 1606 2048 -3829 1 666 310 42 42 0 chr6 10632951 10632999 -138884038 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 666 1872 209 23 52 chr6 10632999 10633112 -138883925 + L1_Mur2 LINE L1 2049 2159 -3718 1 666 5857 156 23 14 chr6 10633617 10634672 -138882365 + Lx3C LINE L1 5911 6974 -2 1 666 233 252 74 0 chr6 10635118 10635253 -138881784 - L1MB4 LINE L1 -23 6160 6016 1 666 500 249 58 29 chr6 10635406 10635613 -138881424 - L1MB4 LINE L1 -281 5899 5687 1 666 371 371 100 47 chr6 10635616 10635955 -138881082 + MLT1A LTR MaLR 1 357 -17 1 666 239 176 20 0 chr6 10636237 10636288 -138880749 - L1M4 LINE L1 -717 5461 5410 1 666 960 190 0 19 chr6 10637213 10637422 -138879615 - Lx2 LINE L1 -1 6996 6792 1 666 5804 125 8 8 chr6 10637590 10638533 -138878504 - L1_Mus3 LINE L1 -3 6635 5693 1 666 3172 172 11 5 chr6 10638521 10639162 -138877875 - L1_Mus3 LINE L1 -396 5487 4843 1 666 2201 90 66 14 chr6 10639579 10639928 -138877109 + IAPLTR1_Mm LTR ERVK 1 367 0 1 666 7875 82 57 21 chr6 10639928 10641188 -138875849 + IAPEz-int LTR ERVK 8 1313 -5168 1 666 27598 20 1 0 chr6 10641187 10644453 -138872584 + IAPEz-int LTR ERVK 3210 6478 -3 1 666 2201 90 66 14 chr6 10644457 10644806 -138872231 + IAPLTR1_Mm LTR ERVK 1 367 0 1 666 284 146 55 0 chr6 10645075 10645130 -138871907 + GA-rich Low_complexity Low_complexity 3 60 0 1 666 503 128 0 35 chr6 10645141 10645254 -138871783 + GA-rich Low_complexity Low_complexity 4 112 0 1 666 3162 46 13 0 chr6 10645291 10645682 -138871355 + MTA_Mm LTR MaLR 1 396 0 1 666 3286 199 45 25 chr6 10646662 10647435 -138869602 + Lx5 LINE L1 5813 6601 -449 1 666 937 252 40 4 chr6 10647436 10647687 -138869350 + Lx5 LINE L1 6736 6995 -55 1 666 354 45 0 0 chr6 10647699 10647743 -138869294 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 1 666 595 321 114 0 chr6 10647817 10648010 -138869027 + B4A SINE B4 1 215 -77 1 666 6523 56 31 0 chr6 10648010 10648916 -138868121 - L1_Mm LINE L1 -2099 3784 2851 1 666 3468 63 11 0 chr6 10648900 10649360 -138867677 + L1Md_F2 LINE L1 5975 6439 -143 1 666 36257 30 0 0 chr6 10649359 10656043 -138860994 - L1Md_T LINE L1 0 6585 1 1 666 1053 105 6 0 chr6 10656043 10656205 -138860832 + L1Md_F2 LINE L1 6420 6582 0 1 666 387 241 0 12 chr6 10656205 10656289 -138860748 + B4A SINE B4 209 291 -1 1 666 239 87 43 0 chr6 10656987 10657033 -138860004 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 1 666 2942 195 91 36 chr6 10657043 10657702 -138859335 - RMER13B LTR ERVK 0 908 214 1 666 494 221 48 9 chr6 10657687 10657792 -138859245 - RMER13B LTR ERVK -799 109 1 1 666 10843 174 136 24 chr6 10658011 10658973 -138858064 + Lx3_Mus LINE L1 1824 2794 -3092 1 666 180 0 0 0 chr6 10658973 10658993 -138858044 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 666 10843 174 136 24 chr6 10658993 10659259 -138857778 + Lx3_Mus LINE L1 2795 3054 -2832 1 666 1630 36 0 0 chr6 10659259 10659452 -138857585 + B2_Mm1a SINE B2 1 193 0 1 666 10843 187 156 23 chr6 10659452 10661563 -138855474 + Lx3_Mus LINE L1 3048 5788 -92 1 666 2660 30 92 6 chr6 10661564 10661902 -138855135 + IAPLTR1_Mm LTR ERVK 1 367 0 1 666 7121 108 72 19 chr6 10661902 10663143 -138853894 + IAPEz-int LTR ERVK 8 1313 -5168 1 666 27625 20 1 1 chr6 10663141 10666413 -138850624 + IAPEz-int LTR ERVK 3209 6481 0 1 666 2660 30 92 6 chr6 10666413 10666751 -138850286 + IAPLTR1_Mm LTR ERVK 1 367 0 1 666 241 149 21 0 chr6 10666751 10666798 -138850239 + Lx3_Mus LINE L1 5789 5836 -1173 1 666 5316 100 28 1 chr6 10666817 10667596 -138849441 - L1_Mus3 LINE L1 -14 6624 5825 1 666 3329 151 42 0 chr6 10667596 10668186 -138848851 - L1_Mm LINE L1 -275 5608 4994 1 666 1084 177 4 52 chr6 10668185 10668417 -138848620 + Lx2 LINE L1 5869 6089 -908 1 666 280 282 44 37 chr6 10668414 10668550 -138848487 - L1M2 LINE L1 -1520 4620 4484 1 666 195 42 0 0 chr6 10668691 10668715 -138848322 + (TAG)n Simple_repeat Simple_repeat 3 26 0 1 666 303 403 17 0 chr6 10668734 10668853 -138848184 - ID_B1 SINE B4 -26 198 78 1 666 801 285 65 7 chr6 10668853 10669257 -138847780 - L1M2 LINE L1 -1718 4428 3991 1 666 38 22 0 0 chr6 10669283 10669328 -138847709 + AT_rich Low_complexity Low_complexity 1 45 0 1 666 8628 20 0 0 chr6 10669523 10670571 -138846466 - L1Md_A LINE L1 -2 6580 5533 1 666 369 133 0 0 chr6 10674787 10674862 -138842175 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 666 5477 57 0 3 chr6 10675009 10675697 -138841340 + L1Md_F2 LINE L1 5887 6572 -10 1 666 794 95 14 7 chr6 10675826 10675964 -138841073 + L1_Mus3 LINE L1 6497 6635 -3 1 666 225 0 0 0 chr6 10676042 10676067 -138840970 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 666 23 0 0 0 chr6 10676483 10676506 -138840531 + AT_rich Low_complexity Low_complexity 1 23 0 1 666 1151 68 0 0 chr6 10676641 10676787 -138840250 + B1_Mus2 SINE Alu 2 147 0 1 666 488 0 0 0 chr6 10676828 10676887 -138840150 + L1Md_F2 LINE L1 6503 6561 -21 1 666 198 0 0 0 chr6 10677420 10677442 -138839595 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 666 402 173 0 0 chr6 10677530 10677605 -138839432 + T-rich Low_complexity Low_complexity 1 75 0 1 666 1552 156 83 3 chr6 10677606 10677896 -138839141 - Lx LINE L1 -1 6653 6341 1 666 6252 111 46 26 chr6 10677900 10678860 -138838177 + L1_Mur1 LINE L1 2492 3447 -467 1 666 191 36 36 0 chr6 10678860 10678888 -138838149 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 666 6252 141 43 24 chr6 10678888 10679215 -138837822 + L1_Mur1 LINE L1 3448 3808 -2078 1 666 203 0 37 0 chr6 10679231 10679258 -138837779 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 666 427 348 191 10 chr6 10679338 10679547 -138837490 - B4A SINE B4 -43 249 3 1 666 321 217 14 14 chr6 10679563 10679633 -138837404 - HAL1-3A_ME LINE L1 -813 2045 1976 1 666 201 159 0 0 chr6 10679650 10679694 -138837343 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 666 207 0 50 50 chr6 10681355 10681395 -138835642 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 1 666 472 277 39 21 chr6 10681482 10681689 -138835348 - L1_Mur3 LINE L1 -219 5628 5429 1 666 835 189 85 6 chr6 10681689 10681865 -138835172 + ORR1B1-int LTR MaLR 1320 1509 0 1 666 1687 214 68 8 chr6 10681865 10682232 -138834805 + ORR1B1 LTR MaLR 1 389 -5 1 666 494 184 36 64 chr6 10682375 10682485 -138834552 + RLTR23 LTR ERV1 1 107 -323 1 666 205 29 0 56 chr6 10682573 10682609 -138834428 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 666 39464 32 2 6 chr6 10682782 10689004 -138828033 - L1Md_A LINE L1 0 6582 391 2 666 7964 100 14 2 chr6 10689008 10690765 -138826272 - L1Md_F2 LINE L1 -19 6563 4785 2 666 338 0 0 23 chr6 10691549 10691592 -138825445 + (TCC)n Simple_repeat Simple_repeat 3 44 0 2 666 294 29 0 0 chr6 10692293 10692328 -138824709 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 666 5228 49 8 0 chr6 10692566 10693221 -138823816 + L1Md_F2 LINE L1 5922 6581 -1 2 666 1193 285 79 98 chr6 10694513 10694777 -138822260 + L1_Rod LINE L1 514 738 -6870 2 666 342 0 0 0 chr6 10694777 10694815 -138822222 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 666 1193 285 79 98 chr6 10694815 10694992 -138822045 + L1_Rod LINE L1 739 927 -6681 2 666 183 100 0 0 chr6 10694992 10695022 -138822015 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 666 1743 249 45 39 chr6 10695022 10695761 -138821276 + L1_Rod LINE L1 928 1680 -4167 2 666 1635 277 30 9 chr6 10695827 10696268 -138820769 - MT2A LTR ERVL -57 476 27 2 666 1194 262 32 36 chr6 10696317 10696815 -138820222 + L1_Rod LINE L1 1679 2174 -3673 2 666 1499 256 25 30 chr6 10697213 10697688 -138819349 + L1_Rod LINE L1 2189 2661 -3186 2 666 28970 98 30 5 chr6 10697699 10702767 -138814270 + L1Md_F2 LINE L1 392 5590 -293 2 666 7456 80 0 4 chr6 10702779 10703779 -138813258 + L1Md_F2 LINE L1 5587 6582 0 2 666 1631 260 123 36 chr6 10703791 10704776 -138812261 + L1_Rod LINE L1 2672 3664 -2479 2 666 2549 79 11 23 chr6 10704776 10705126 -138811911 - ORR1A1 LTR MaLR 0 346 1 2 666 618 303 77 77 chr6 10705126 10705260 -138811777 + L1_Rod LINE L1 3665 3794 -2349 2 666 1324 273 63 34 chr6 10705281 10705959 -138811078 + L1_Rod LINE L1 4465 5162 -685 2 666 2937 266 27 75 chr6 10705963 10707062 -138809975 + Lx9 LINE L1 6472 7517 -127 2 666 195 129 0 0 chr6 10707062 10707093 -138809944 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2 666 204 40 0 0 chr6 10707093 10707118 -138809919 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 666 696 168 47 18 chr6 10707857 10708027 -138809010 + Lx3_Mus LINE L1 6835 7009 0 2 666 306 0 0 0 chr6 10709623 10709657 -138807380 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 666 362 369 32 11 chr6 10709658 10709847 -138807190 - Tigger9b DNA MER2_type -428 196 4 2 666 993 41 0 0 chr6 10712528 10712650 -138804387 + (GAA)n Simple_repeat Simple_repeat 2 123 0 2 666 338 281 155 15 chr6 10713276 10713466 -138803571 - B3 SINE B2 -2 214 1 2 666 21 71 0 0 chr6 10714060 10714102 -138802935 + AT_rich Low_complexity Low_complexity 1 42 0 2 666 787 178 7 7 chr6 10714111 10714258 -138802779 - B1_Mus1 SINE Alu 0 148 2 2 666 564 15 0 0 chr6 10714753 10714818 -138802219 + (GGGA)n Simple_repeat Simple_repeat 1 65 0 2 666 3468 80 49 2 chr6 10714875 10715361 -138801676 + L1_Mus1 LINE L1 6059 6567 0 2 666 24 0 0 0 chr6 10715452 10715476 -138801561 + AT_rich Low_complexity Low_complexity 1 24 0 2 666 25 0 0 0 chr6 10716177 10716202 -138800835 + AT_rich Low_complexity Low_complexity 1 25 0 2 666 535 318 15 0 chr6 10716281 10716413 -138800624 + RSINE1 SINE B4 1 134 -31 2 666 450 0 0 0 chr6 10716470 10716520 -138800517 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 666 315 49 0 0 chr6 10716552 10716593 -138800444 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 2 666 229 273 32 16 chr6 10716721 10716844 -138800193 + L1MD2 LINE L1 5815 5939 -420 2 666 867 285 20 20 chr6 10716845 10717049 -138799988 - B3 SINE B2 -7 209 6 2 666 238 26 25 25 chr6 10719965 10720005 -138797032 + (TTTTTG)n Simple_repeat Simple_repeat 6 45 0 2 666 246 368 101 42 chr6 10720005 10720124 -138796913 - MER20B DNA MER1_type -616 167 42 2 666 242 178 0 0 chr6 10720316 10720361 -138796676 - B3 SINE B2 -7 209 165 2 666 228 35 0 0 chr6 10720522 10720551 -138796486 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2 666 249 33 0 0 chr6 10720730 10720760 -138796277 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2 666 267 361 82 8 chr6 10720896 10721030 -138796007 - Lx8 LINE L1 -138 7335 7192 2 666 1700 308 42 51 chr6 10721211 10721729 -138795308 + Lx8 LINE L1 6222 6741 -732 2 666 1204 37 134 0 chr6 10721729 10721893 -138795144 + B2_Mm1t SINE B2 2 187 -6 2 666 1700 308 42 51 chr6 10721893 10722114 -138794923 + Lx8 LINE L1 6742 6954 -519 2 666 306 341 13 94 chr6 10722222 10722371 -138794666 + Tigger5 DNA MER2_type 142 278 -2128 2 666 500 217 125 0 chr6 10723985 10724105 -138792932 + B1_Mur2 SINE Alu 1 135 -14 2 666 1067 65 0 7 chr6 10725220 10725360 -138791677 - B1_Mm SINE Alu -7 140 2 2 666 227 376 0 65 chr6 10725844 10725952 -138791085 - Cheshire DNA MER1_type -2159 261 161 2 666 227 242 90 15 chr6 10726095 10726162 -138790875 - MER5A DNA MER1_type -111 78 7 2 666 382 373 65 0 chr6 10726176 10726377 -138790660 - MER58A DNA MER1_type 0 224 11 2 666 263 28 28 0 chr6 10726513 10726549 -138790488 + (TATG)n Simple_repeat Simple_repeat 4 40 0 2 666 712 233 32 5 chr6 10726552 10726742 -138790295 - Lx5 LINE L1 0 7050 6856 2 666 256 279 0 0 chr6 10726744 10726805 -138790232 - Lx5 LINE L1 -415 6635 6575 2 666 1917 218 136 20 chr6 10726805 10727305 -138789732 + RLTR12A LTR ERVK 1 558 -10 2 666 3017 205 69 11 chr6 10727312 10728008 -138789029 - Lx5 LINE L1 -470 6580 5845 2 666 6253 168 7 7 chr6 10728030 10729097 -138787940 + Lx LINE L1 5587 6653 -1 2 666 4293 182 37 6 chr6 10729090 10729929 -138787108 - Lx5 LINE L1 -42 5835 4971 2 666 5468 164 24 12 chr6 10729929 10730824 -138786213 + L1_Mur2 LINE L1 3725 4634 -1243 2 666 3436 37 0 0 chr6 10730824 10731231 -138785806 + L1Md_F3 LINE L1 6162 6568 -16 2 666 678 25 0 0 chr6 10731234 10731314 -138785723 + (TAAA)n Simple_repeat Simple_repeat 1 80 0 2 666 5468 164 24 12 chr6 10731314 10731466 -138785571 + L1_Mur2 LINE L1 4635 4788 -1089 2 666 636 338 73 28 chr6 10731629 10731985 -138785052 - Lx8 LINE L1 -244 7229 6858 2 666 30 27 0 0 chr6 10732235 10732272 -138784765 + AT_rich Low_complexity Low_complexity 1 37 0 2 666 198 0 0 0 chr6 10733967 10733989 -138783048 + (CCA)n Simple_repeat Simple_repeat 1 22 0 2 666 333 0 0 0 chr6 10734049 10734086 -138782951 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 666 266 269 51 22 chr6 10734108 10734245 -138782792 - L1MA4 LINE L1 -386 5914 5774 2 666 250 243 37 0 chr6 10734257 10734364 -138782673 - Lx9 LINE L1 -2 7642 7532 2 666 243 0 0 0 chr6 10734377 10734404 -138782633 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 666 828 53 0 0 chr6 10734430 10734544 -138782493 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 2 666 6896 147 24 6 chr6 10734545 10734660 -138782377 + Lx3_Mus LINE L1 5795 5909 -1100 2 666 212 0 36 0 chr6 10734660 10734688 -138782349 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 666 6896 147 24 6 chr6 10734688 10735738 -138781299 + Lx3_Mus LINE L1 5910 6980 -29 2 666 252 0 0 0 chr6 10735738 10735766 -138781271 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2 666 6896 147 24 6 chr6 10735766 10735780 -138781257 + Lx3_Mus LINE L1 6981 6994 -15 2 666 23 0 0 0 chr6 10735869 10735892 -138781145 + AT_rich Low_complexity Low_complexity 1 23 0 2 666 603 174 0 0 chr6 10735986 10736101 -138780936 + (TG)n Simple_repeat Simple_repeat 2 116 0 2 666 719 322 56 24 chr6 10736167 10736521 -138780516 - Lx8 LINE L1 -458 7186 6686 2 666 433 216 128 8 chr6 10736590 10736707 -138780330 - RLTR25B LTR ERVK 0 1103 973 2 666 3763 184 83 32 chr6 10736685 10737467 -138779570 - RLTR25B LTR ERVK -206 822 1 2 666 303 276 96 6 chr6 10737473 10737630 -138779407 + L1M2 LINE L1 5565 5735 -556 2 666 216 130 0 0 chr6 10737630 10737676 -138779361 + (A)n Simple_repeat Simple_repeat 1 46 0 2 666 444 37 0 0 chr6 10739459 10739513 -138777524 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 666 1784 153 26 62 chr6 10742587 10742928 -138774109 + ORR1A4 LTR MaLR 1 329 0 2 666 950 71 7 0 chr6 10744748 10744888 -138772149 + (TTTC)n Simple_repeat Simple_repeat 2 142 0 2 666 1721 158 50 0 chr6 10745040 10745319 -138771718 - Lx LINE L1 -305 6349 6057 2 666 1183 106 194 40 chr6 10745313 10745560 -138771477 + Lx LINE L1 6365 6649 -5 2 666 1881 269 23 97 chr6 10745598 10746215 -138770822 - RMER19C LTR ERVK -40 571 1 2 666 183 80 0 0 chr6 10746339 10746364 -138770673 + (T)n Simple_repeat Simple_repeat 1 25 0 2 666 728 74 0 69 chr6 10746380 10746511 -138770526 - L1_Mus1 LINE L1 -2 6565 6444 2 666 229 16 0 0 chr6 10746513 10746544 -138770493 - L1_Mus1 LINE L1 -248 6334 6303 2 666 3355 68 48 4 chr6 10746677 10747134 -138769903 - L1_Mus1 LINE L1 -1 6566 6090 2 667 3516 15 2 0 chr6 10748191 10748586 -138768451 - MTA_Mm LTR MaLR 0 396 1 2 667 9451 21 0 2 chr6 10748586 10749686 -138767351 - MTA_Mm-int LTR MaLR 0 1098 1 2 667 3485 15 2 0 chr6 10749686 10750081 -138766956 - MTA_Mm LTR MaLR 0 396 1 2 667 1878 258 88 16 chr6 10750962 10751459 -138765578 - Lx5 LINE L1 -21 7029 6497 2 667 438 241 59 38 chr6 10752024 10752172 -138764865 + ORR1D1 LTR MaLR 230 368 -16 2 667 523 319 57 32 chr6 10752183 10752465 -138764572 - Lx8 LINE L1 -840 6633 6345 2 667 236 315 90 0 chr6 10752584 10752673 -138764364 + L1_Mur3 LINE L1 298 394 -7334 2 667 21 0 0 0 chr6 10753137 10753158 -138763879 + AT_rich Low_complexity Low_complexity 1 21 0 2 667 405 0 0 0 chr6 10754093 10754138 -138762899 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 667 29626 97 14 15 chr6 10754545 10759533 -138757504 + L1Md_F2 LINE L1 611 5586 -297 2 667 7050 94 5 5 chr6 10759534 10760528 -138756509 + L1Md_F2 LINE L1 5588 6581 -1 2 667 2821 191 33 8 chr6 10760714 10761354 -138755683 + L1_Mur3 LINE L1 3917 4572 -1308 2 667 219 133 0 0 chr6 10761395 10761440 -138755597 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 2 667 1138 62 7 0 chr6 10761443 10761589 -138755448 - B1_Mus1 SINE Alu 0 148 2 2 667 227 232 0 18 chr6 10761590 10761647 -138755390 + L1_Mur3 LINE L1 4583 4638 -1242 2 667 425 246 53 92 chr6 10761652 10761804 -138755233 + B4 SINE B4 76 221 -71 2 667 1007 92 14 0 chr6 10761668 10761809 -138755228 + B1_Mus1 SINE Alu 6 148 0 2 667 218 128 0 60 chr6 10761811 10761861 -138755176 + A-rich Low_complexity Low_complexity 3 49 0 2 667 26968 157 30 43 chr6 10761886 10764811 -138752226 + L1_Mus2 LINE L1 218 3175 -2708 2 667 1389 61 0 0 chr6 10764811 10764991 -138752046 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 667 26968 119 15 30 chr6 10764991 10768498 -138748539 + L1_Mus2 LINE L1 3176 6566 0 2 667 4672 245 50 15 chr6 10768497 10770466 -138746571 + Lx6 LINE L1 4665 6742 -718 2 667 198 91 0 0 chr6 10770466 10770499 -138746538 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2 667 4225 261 84 23 chr6 10770499 10770825 -138746212 + Lx6 LINE L1 6743 7070 -390 2 667 946 193 40 44 chr6 10770846 10771095 -138745942 + Lx7 LINE L1 7449 7696 0 2 667 418 260 76 43 chr6 10771115 10771208 -138745829 + RCHARR1 DNA MER1_type 778 883 -91 2 667 3930 103 22 14 chr6 10771208 10771787 -138745250 + MT2B2 LTR ERVL 1 584 0 2 667 418 260 76 43 chr6 10771787 10771878 -138745159 + RCHARR1 DNA MER1_type 884 968 -6 2 667 28 48 0 0 chr6 10772820 10772862 -138744175 + AT_rich Low_complexity Low_complexity 1 42 0 2 667 2215 173 25 0 chr6 10773755 10774148 -138742889 - Lx2 LINE L1 0 6997 6595 2 667 7543 143 45 36 chr6 10775126 10776616 -138740421 + L1_Mur1 LINE L1 3124 4626 -1260 2 667 1391 59 5 0 chr6 10776653 10776911 -138740126 - L1Md_F3 LINE L1 0 6584 6381 3 667 4273 24 112 6 chr6 10776913 10777455 -138739582 - L1Md_F3 LINE L1 0 6584 5985 3 667 227 200 32 32 chr6 10777455 10777517 -138739520 + L1Md_F3 LINE L1 5910 5971 -613 3 667 3155 41 41 0 chr6 10777472 10777861 -138739176 - L1Md_F3 LINE L1 -191 6393 5994 3 667 1076 68 0 0 chr6 10777861 10777994 -138739043 - B1_Mus1 SINE Alu -12 136 4 3 667 7174 146 16 23 chr6 10777999 10779736 -138737301 + Lx3C LINE L1 4655 6375 -601 3 667 3348 30 7 2 chr6 10779736 10780139 -138736898 + L1Md_F2 LINE L1 6178 6582 0 3 667 7088 159 31 35 chr6 10780139 10780672 -138736365 + Lx3C LINE L1 6376 6911 -65 3 667 344 326 63 32 chr6 10780693 10780883 -138736154 + L1M2 LINE L1 4154 4349 -1794 3 667 6072 57 1 1 chr6 10780902 10781662 -138735375 + L1Md_F2 LINE L1 5809 6568 -14 3 667 269 197 14 0 chr6 10781716 10781787 -138735250 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 667 282 307 18 90 chr6 10781791 10781902 -138735135 - RMER12 LTR ERVK -472 850 748 3 667 545 334 110 10 chr6 10781933 10782450 -138734587 + L1M2 LINE L1 4474 5042 -1101 3 667 373 345 18 118 chr6 10782617 10782946 -138734091 + L1M2 LINE L1 5054 5349 -794 3 667 1859 302 92 85 chr6 10782946 10783880 -138733157 + Charlie12 DNA MER1_type 1451 2414 -459 3 667 2642 183 48 16 chr6 10783880 10784458 -138732579 + Lx3C LINE L1 6377 6973 -3 3 667 1859 302 92 85 chr6 10784458 10784936 -138732101 + Charlie12 DNA MER1_type 2415 2873 0 3 667 41101 6 0 0 chr6 10785143 10790586 -138726451 - L1Md_A LINE L1 0 6582 1140 3 667 988 0 0 0 chr6 10790586 10790693 -138726344 - U6 snRNA snRNA 0 107 1 3 667 647 316 82 32 chr6 10790967 10791040 -138725997 - Lx8 LINE L1 -58 7415 7335 3 667 641 76 0 11 chr6 10791040 10791133 -138725904 + (TTC)n Simple_repeat Simple_repeat 1 92 0 3 667 647 316 82 32 chr6 10791133 10791438 -138725599 - Lx8 LINE L1 -139 7334 7018 3 667 502 258 25 25 chr6 10791500 10791663 -138725374 + Lx8 LINE L1 6577 6739 -734 3 667 1416 201 98 58 chr6 10791663 10792144 -138724893 - RMER17A2 LTR ERVK 0 906 407 3 667 410 306 32 0 chr6 10792285 10792409 -138724628 + Lx8 LINE L1 6875 7002 -471 3 667 252 0 0 0 chr6 10792627 10792655 -138724382 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 667 201 114 22 22 chr6 10792656 10792701 -138724336 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 667 31690 91 8 9 chr6 10793190 10798353 -138718684 + L1Md_F2 LINE L1 446 5585 -298 3 667 7437 70 18 3 chr6 10798354 10799335 -138717702 + L1Md_F2 LINE L1 5587 6582 0 3 667 1320 243 66 0 chr6 10799446 10799763 -138717274 + L1_Mur3 LINE L1 282 619 -7093 3 667 1383 235 8 55 chr6 10799766 10800145 -138716892 - RLTR20A LTR ERVK -176 365 5 3 667 189 180 0 0 chr6 10800232 10800282 -138716755 + A-rich Low_complexity Low_complexity 1 50 0 3 667 1130 117 6 0 chr6 10800287 10800466 -138716571 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 3 667 873 289 57 10 chr6 10800471 10800772 -138716265 + Lx6 LINE L1 6989 7303 -157 3 667 5473 128 32 16 chr6 10800888 10801799 -138715238 - Lx LINE L1 -3 6651 5727 3 667 474 132 13 0 chr6 10801799 10801875 -138715162 - B1_Mus2 SINE Alu -69 78 2 3 667 1045 280 36 28 chr6 10801904 10802264 -138714773 - Lx9 LINE L1 -622 7022 6660 3 667 571 234 0 45 chr6 10802264 10802398 -138714639 - MTC LTR MaLR 0 421 294 3 667 4961 186 19 28 chr6 10802447 10803159 -138713878 - Lx3B LINE L1 -982 5991 5277 3 667 396 0 0 0 chr6 10803159 10803203 -138713834 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 667 4961 185 21 31 chr6 10803203 10803644 -138713393 - Lx3B LINE L1 -610 5276 4854 3 667 2306 190 86 27 chr6 10803635 10804504 -138712533 - L1_Mur1 LINE L1 -2148 1764 842 3 667 311 260 65 32 chr6 10804702 10804876 -138712161 + L1MB1 LINE L1 3595 3777 -2369 3 667 280 279 28 28 chr6 10805230 10805337 -138711700 + L1M2 LINE L1 4214 4320 -1823 3 667 1371 335 50 10 chr6 10805394 10805895 -138711142 - Lx5 LINE L1 -75 6975 6455 3 667 842 314 25 21 chr6 10805933 10806356 -138710681 + Lx5 LINE L1 6110 6749 -711 3 667 222 90 0 103 chr6 10806357 10806444 -138710593 + A-rich Low_complexity Low_complexity 3 80 0 3 667 322 248 19 9 chr6 10806464 10806570 -138710467 + L1MB1 LINE L1 4330 4436 -1710 3 667 333 100 0 0 chr6 10806642 10806692 -138710345 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 667 657 78 0 37 chr6 10806781 10806888 -138710149 - L1_Mus1 LINE L1 0 6567 6465 3 667 647 267 51 25 chr6 10806891 10807283 -138709754 + L1MB1 LINE L1 4756 5157 -983 3 667 21 0 0 31 chr6 10807620 10807634 -138709403 + AT_rich Low_complexity Low_complexity 1 14 0 3 667 1026 122 0 0 chr6 10807634 10807782 -138709255 + B1_Mus1 SINE Alu 1 148 0 3 667 21 0 0 31 chr6 10807782 10807799 -138709238 + AT_rich Low_complexity Low_complexity 1 17 0 3 667 447 35 0 0 chr6 10807810 10807867 -138709170 + (GAGAA)n Simple_repeat Simple_repeat 4 60 0 3 667 14445 196 11 36 chr6 10808507 10810617 -138706420 + L1_Mur1 LINE L1 1484 3544 -2342 3 667 4141 63 41 7 chr6 10810617 10811159 -138705878 - LTRIS2 LTR ERV1 0 564 5 3 667 14445 196 11 36 chr6 10811159 10811618 -138705419 + L1_Mur1 LINE L1 3545 4002 -1884 3 667 1702 157 53 143 chr6 10811618 10812050 -138704987 + RLTR9C LTR ERVK 1 393 0 3 667 14445 196 11 36 chr6 10812050 10812881 -138704156 + L1_Mur1 LINE L1 4003 4800 -1086 3 667 2146 136 33 20 chr6 10812896 10813294 -138703743 + Lx2 LINE L1 6594 6996 -1 3 667 21 57 0 0 chr6 10813301 10813336 -138703701 + AT_rich Low_complexity Low_complexity 1 35 0 3 667 361 307 96 33 chr6 10813441 10813744 -138703293 + L1MB1 LINE L1 5843 6164 -4 3 667 237 298 170 6 chr6 10815352 10815511 -138701526 - Lx8 LINE L1 -1036 6437 6253 3 667 22 0 0 0 chr6 10815587 10815609 -138701428 + AT_rich Low_complexity Low_complexity 1 22 0 3 667 199 93 47 0 chr6 10815962 10816005 -138701032 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 3 667 964 284 32 14 chr6 10816236 10816518 -138700519 - ORR1D1 LTR MaLR -86 288 2 3 667 344 366 92 21 chr6 10816584 10816824 -138700213 + MLT1F LTR MaLR 198 454 -94 3 667 336 168 63 0 chr6 10817279 10817374 -138699663 - Lx9 LINE L1 -7 7637 7537 3 667 1148 47 0 0 chr6 10817374 10817524 -138699513 + L1Md_A LINE L1 6433 6582 0 3 667 873 243 82 17 chr6 10817530 10817823 -138699214 - Lx9 LINE L1 -94 7550 7239 3 667 28 0 0 0 chr6 10818176 10818204 -138698833 + AT_rich Low_complexity Low_complexity 1 28 0 3 667 758 270 35 5 chr6 10818828 10819029 -138698008 - B3 SINE B2 -8 208 2 3 667 201 167 0 0 chr6 10819359 10819395 -138697642 + T-rich Low_complexity Low_complexity 1 36 0 3 667 2589 124 0 5 chr6 10819504 10819900 -138697137 - L1_Mus4 LINE L1 -3 6633 6240 3 667 357 47 31 15 chr6 10820156 10820221 -138696816 + (TTTA)n Simple_repeat Simple_repeat 1 66 0 3 667 7353 75 0 8 chr6 10820221 10820472 -138696565 - L1_Mus1 LINE L1 -27 6540 6297 3 667 2799 48 22 32 chr6 10820472 10820841 -138696196 - RLTR10B2 LTR ERVK 0 365 1 3 667 28534 130 35 8 chr6 10820841 10826785 -138690252 - L1_Mus1 LINE L1 -271 6296 177 3 667 27 81 0 0 chr6 10826811 10826873 -138690164 + AT_rich Low_complexity Low_complexity 1 62 0 3 667 3324 154 98 24 chr6 10826903 10827607 -138689430 + RMER6A LTR ERVK 1 756 0 3 667 4246 256 51 16 chr6 10828378 10829492 -138687545 + Lx7 LINE L1 6088 7240 -456 3 667 7875 141 44 10 chr6 10829514 10830527 -138686510 - Lx2 LINE L1 -58 6939 5890 3 667 6232 64 6 30 chr6 10830527 10831369 -138685668 + RLTR13B2 LTR ERVK 1 822 0 3 667 7875 150 40 8 chr6 10831369 10831753 -138685284 - Lx2 LINE L1 -1108 5889 5497 3 667 1013 233 50 154 chr6 10831762 10832289 -138684748 + Lx7 LINE L1 7105 7668 -28 3 667 219 250 26 13 chr6 10833343 10833420 -138683617 + GA-rich Low_complexity Low_complexity 1 78 0 3 667 355 304 18 12 chr6 10833472 10833642 -138683395 + A-rich Low_complexity Low_complexity 3 173 0 3 667 243 0 0 0 chr6 10833762 10833789 -138683248 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 667 244 288 0 0 chr6 10833995 10834067 -138682970 + GA-rich Low_complexity Low_complexity 1 72 0 3 667 11836 118 6 15 chr6 10835082 10837659 -138679378 - L1_Mus2 LINE L1 -6 6560 4007 3 667 231 146 0 0 chr6 10838917 10838958 -138678079 + (A)n Simple_repeat Simple_repeat 1 41 0 3 667 790 104 0 0 chr6 10839606 10839712 -138677325 - L1VL1 LINE L1 -6299 123 18 3 667 14902 192 37 13 chr6 10840766 10844524 -138672513 + Lx4B LINE L1 3089 6923 -74 3 667 371 278 138 25 chr6 10845387 10845627 -138671410 + L1M5 LINE L1 4300 4566 -1580 3 667 262 298 57 45 chr6 10845637 10845813 -138671224 - ERVL-E-int LTR ERVL -2453 3214 3037 3 667 254 309 14 14 chr6 10846052 10846121 -138670916 - ERVL-int LTR ERVL -5009 748 680 3 667 249 376 44 21 chr6 10846365 10846561 -138670476 - MLT2B4 LTR ERVL -279 241 40 3 667 22 56 0 0 chr6 10846899 10846935 -138670102 + AT_rich Low_complexity Low_complexity 1 36 0 3 667 291 28 0 0 chr6 10847656 10847692 -138669345 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 667 216 0 0 0 chr6 10848755 10848779 -138668258 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 667 205 186 16 33 chr6 10849427 10849488 -138667549 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 667 537 16 0 0 chr6 10850055 10850117 -138666920 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 667 21 0 0 0 chr6 10850402 10850423 -138666614 + AT_rich Low_complexity Low_complexity 1 21 0 3 667 241 274 36 0 chr6 10850715 10850799 -138666238 + Lx7 LINE L1 7258 7344 -352 3 667 31 26 0 0 chr6 10850811 10850849 -138666188 + AT_rich Low_complexity Low_complexity 1 38 0 3 667 4418 138 145 64 chr6 10850926 10851870 -138665167 + RLTR13D2 LTR ERVK 1 1021 -2 3 667 973 134 32 0 chr6 10852229 10852386 -138664651 + RMER4B LTR ERVK 16 177 -408 3 667 1371 179 42 85 chr6 10854756 10855110 -138661927 - Lx5 LINE L1 -1091 5959 5621 3 667 605 290 37 42 chr6 10855098 10855314 -138661723 + Lx6 LINE L1 7194 7408 -52 3 667 327 303 130 39 chr6 10855549 10855779 -138661258 - L1MC3 LINE L1 -671 7114 6864 3 667 394 324 82 108 chr6 10855803 10856191 -138660846 - L1MC3 LINE L1 -874 6911 6534 3 667 27 0 0 0 chr6 10856455 10856482 -138660555 + AT_rich Low_complexity Low_complexity 1 27 0 3 667 4592 104 59 4 chr6 10856531 10857403 -138659634 + L1VL4 LINE L1 202 1117 -2442 3 667 2535 64 3 3 chr6 10857403 10857734 -138659303 + IAPEY_LTR LTR ERVK 55 385 0 3 667 19839 182 24 32 chr6 10857735 10862980 -138654057 + Lx LINE L1 1468 6654 0 3 667 29 60 0 0 chr6 10863000 10863050 -138653987 + AT_rich Low_complexity Low_complexity 1 50 0 3 667 261 0 0 0 chr6 10863748 10863777 -138653260 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 667 432 0 0 0 chr6 10863777 10863824 -138653213 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 667 852 63 0 0 chr6 10864786 10864897 -138652140 + (TTTTC)n Simple_repeat Simple_repeat 1 111 0 4 667 269 70 47 0 chr6 10864903 10864946 -138652091 + (TTCCC)n Simple_repeat Simple_repeat 3 47 0 4 667 739 194 0 22 chr6 10864948 10865127 -138651910 + CT-rich Low_complexity Low_complexity 4 178 0 4 667 267 31 0 0 chr6 10865127 10865159 -138651878 + (TCCCC)n Simple_repeat Simple_repeat 5 36 0 4 667 34800 33 0 0 chr6 10865163 10870053 -138646984 - L1Md_T LINE L1 0 6582 1694 4 667 1855 143 244 30 chr6 10870166 10870633 -138646404 + RLTR6_Mm LTR ERV1 37 603 -51 4 667 64360 37 12 0 chr6 10870634 10878323 -138638714 + RLTR6-int LTR ERV1 1 7778 0 4 667 1808 138 253 31 chr6 10878435 10878885 -138638152 + RLTR6_Mm LTR ERV1 37 586 -68 4 83 3497 77 0 0 chr6 10878885 10879473 -138637564 - L1Md_F LINE L1 -4188 1695 1108 4 668 5835 110 57 2 chr6 10879441 10880318 -138636719 - L1Md_F LINE L1 -5411 1205 281 4 668 596 50 12 0 chr6 10880319 10880399 -138636638 + (TTTTC)n Simple_repeat Simple_repeat 3 83 0 4 668 26 0 0 0 chr6 10881860 10881886 -138635151 + AT_rich Low_complexity Low_complexity 1 26 0 4 668 222 91 0 0 chr6 10881892 10881925 -138635112 + (A)n Simple_repeat Simple_repeat 1 33 0 4 668 2864 104 13 22 chr6 10883088 10883540 -138633497 + L1_Mus4 LINE L1 6188 6635 -1 4 668 256 331 107 8 chr6 10884072 10884194 -138632843 + RSINE1 SINE B4 24 157 -8 4 668 22 0 0 0 chr6 10884603 10884625 -138632412 + AT_rich Low_complexity Low_complexity 1 22 0 4 668 21 82 0 0 chr6 10884918 10884967 -138632070 + AT_rich Low_complexity Low_complexity 1 49 0 4 668 429 70 0 0 chr6 10885206 10885263 -138631774 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 4 668 279 0 0 0 chr6 10885954 10885985 -138631052 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 668 1014 121 0 0 chr6 10886025 10886165 -138630872 - B1_Mus2 SINE Alu -3 144 5 4 668 527 358 42 43 chr6 10886786 10887208 -138629829 - MTEb-int LTR MaLR -1317 263 12 4 668 295 357 15 37 chr6 10887233 10887367 -138629670 - MTEb LTR MaLR -16 363 233 4 668 298 333 57 74 chr6 10887386 10887561 -138629476 - MTEb LTR MaLR -207 172 1 4 668 21 71 0 0 chr6 10887711 10887753 -138629284 + AT_rich Low_complexity Low_complexity 1 42 0 4 668 1248 20 0 0 chr6 10887791 10887937 -138629100 + B1_Mm SINE Alu 2 147 0 4 668 730 265 26 21 chr6 10888027 10888220 -138628817 - B3A SINE B2 -4 194 1 4 668 261 154 0 0 chr6 10888467 10888506 -138628531 + RSINE1 SINE B4 8 46 -119 4 668 2235 128 200 45 chr6 10888513 10889019 -138628018 + RLTR6_Mm LTR ERV1 1 584 -70 4 668 1309 108 0 0 chr6 10889300 10889495 -138627542 + L1_Mus2 LINE L1 6372 6566 0 4 668 249 356 77 48 chr6 10889721 10889889 -138627148 - MTEa LTR MaLR -200 179 7 4 668 2134 186 93 18 chr6 10889896 10890339 -138626698 + RMER1A Other Other 413 888 -142 4 668 441 171 0 0 chr6 10890339 10890427 -138626610 + (ATGGTG)n Simple_repeat Simple_repeat 4 91 0 4 668 479 206 46 38 chr6 10890430 10890561 -138626476 + RMER1A Other Other 889 1020 -10 4 668 336 235 8 17 chr6 10890890 10891007 -138626030 + (TA)n Simple_repeat Simple_repeat 1 116 0 4 668 612 87 0 0 chr6 10891008 10891100 -138625937 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 4 668 381 136 0 0 chr6 10891105 10891171 -138625866 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 668 364 200 14 0 chr6 10891172 10891242 -138625795 + RMER1A Other Other 604 674 -356 4 668 453 19 0 0 chr6 10891246 10891300 -138625737 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 668 181 250 0 0 chr6 10891914 10891958 -138625079 + L2 LINE L2 1985 2028 -1391 4 668 1411 251 23 45 chr6 10892402 10892799 -138624238 + Lx6 LINE L1 7054 7441 -19 4 668 284 229 12 0 chr6 10893038 10893121 -138623916 - Lx3B LINE L1 -856 6117 6034 4 668 2054 206 24 22 chr6 10893094 10893600 -138623437 - L1_Mur1 LINE L1 -4564 1313 807 4 668 2920 214 84 66 chr6 10894134 10894968 -138622069 - RMER13B LTR ERVK -12 896 48 4 668 2085 74 128 58 chr6 10894973 10895316 -138621721 - L1_Mus2 LINE L1 -3 6563 6197 4 668 3283 82 0 5 chr6 10895319 10895763 -138621274 + L1_Mus2 LINE L1 5752 6193 -373 4 668 232 232 54 0 chr6 10895764 10895820 -138621217 - RMER13B LTR ERVK -845 63 5 4 668 737 326 98 14 chr6 10895898 10896246 -138620791 - MTEb LTR MaLR 0 379 3 4 668 477 242 120 88 chr6 10897860 10898077 -138618960 - Lx5 LINE L1 -3 7047 6824 4 668 1103 66 0 7 chr6 10898300 10898452 -138618585 - L1_Mus1 LINE L1 -1 6566 6416 4 668 524 339 53 95 chr6 10898557 10898841 -138618196 + B4A SINE B4 3 274 -18 4 668 256 301 0 0 chr6 10899354 10899427 -138617610 + ID4 SINE ID 8 80 -3 4 668 291 282 32 32 chr6 10899577 10899731 -138617306 + Lx9 LINE L1 7405 7558 -86 4 668 627 369 73 22 chr6 10899867 10900141 -138616896 + B4A SINE B4 5 292 0 4 668 2678 177 11 4 chr6 10900241 10900717 -138616320 - Lx2 LINE L1 -12 6985 6507 4 668 645 106 164 0 chr6 10900717 10900821 -138616216 - Lx2 LINE L1 -604 6393 6273 4 668 5516 146 17 8 chr6 10900819 10902059 -138614978 + Lx2 LINE L1 4862 6123 -874 4 668 845 314 22 9 chr6 10902910 10903135 -138613902 + B4A SINE B4 60 287 -5 4 668 297 0 0 0 chr6 10903136 10903169 -138613868 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 668 25 31 0 0 chr6 10905044 10905076 -138611961 + AT_rich Low_complexity Low_complexity 1 32 0 4 668 684 233 18 41 chr6 10905126 10905296 -138611741 + B3 SINE B2 48 213 -3 4 668 368 308 121 11 chr6 10905410 10905765 -138611272 - L1MCa LINE L1 -1470 4851 4458 4 668 568 314 47 14 chr6 10905804 10906234 -138610803 - L1MCa LINE L1 -2102 4219 3776 4 668 383 284 139 21 chr6 10906270 10906464 -138610573 - L1MCa LINE L1 -5719 789 573 4 668 283 315 71 109 chr6 10908351 10908618 -138608419 - B4 SINE B4 -31 261 5 4 668 281 337 52 37 chr6 10908705 10908896 -138608141 + MIR SINE MIR 68 261 -1 4 668 239 374 17 0 chr6 10909471 10909586 -138607451 + (TG)n Simple_repeat Simple_repeat 2 118 0 4 668 516 213 135 32 chr6 10910031 10910157 -138606880 + ID_B1 SINE B4 9 147 -77 4 668 359 106 15 0 chr6 10911120 10911186 -138605851 + (TTG)n Simple_repeat Simple_repeat 3 69 0 4 668 1136 75 0 0 chr6 10912444 10912590 -138604447 + B1_Mus1 SINE Alu 1 146 -2 4 668 243 88 0 0 chr6 10912594 10912628 -138604409 + (GGA)n Simple_repeat Simple_repeat 3 36 0 4 668 983 284 103 46 chr6 10912628 10912979 -138604058 + MTD LTR MaLR 48 418 -1 4 668 189 0 0 0 chr6 10913132 10913153 -138603884 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4 668 1016 144 0 12 chr6 10913370 10913532 -138603505 + B2_Mm2 SINE B2 1 160 -35 4 668 1020 65 0 0 chr6 10913532 10913656 -138603381 + L1Md_F2 LINE L1 5463 5586 -297 4 668 7962 52 0 6 chr6 10913656 10914658 -138602379 + L1Md_F2 LINE L1 5587 6582 0 4 668 319 306 73 24 chr6 10915374 10915498 -138601539 - MTEa LTR MaLR 0 379 250 4 668 1040 261 62 48 chr6 10916306 10916680 -138600357 - MTEa LTR MaLR 0 379 1 4 668 869 307 46 14 chr6 10916739 10917106 -138599931 - MTEa LTR MaLR 0 379 1 4 668 5171 56 1 15 chr6 10917255 10917921 -138599116 + L1Md_F2 LINE L1 5926 6582 0 4 668 792 191 7 0 chr6 10918427 10918574 -138598463 - RMER5 LTR ERV1 0 534 387 4 668 213 65 0 0 chr6 10918577 10918608 -138598429 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 668 1786 215 18 30 chr6 10918618 10919012 -138598025 - RMER5 LTR ERV1 -143 391 3 4 668 181 279 0 47 chr6 10919249 10919313 -138597724 + L4 LINE RTE 1728 1788 -241 4 668 183 80 0 0 chr6 10922251 10922276 -138594761 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 4 668 357 125 0 0 chr6 10923409 10923465 -138593572 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 668 230 309 18 0 chr6 10925189 10925244 -138591793 - MER121 Unknown Unknown -347 65 10 4 668 181 279 116 14 chr6 10925554 10925623 -138591414 + L2a LINE L2 3292 3367 -59 4 668 183 273 28 70 chr6 10925803 10925874 -138591163 + MIRb SINE MIR 47 114 -154 4 668 562 311 63 19 chr6 10926158 10926476 -138590561 + L1M2 LINE L1 5490 5821 -476 4 668 22 70 0 0 chr6 10927639 10927682 -138589355 + AT_rich Low_complexity Low_complexity 1 43 0 4 668 672 24 0 0 chr6 10928366 10928448 -138588589 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 668 1324 78 33 6 chr6 10929130 10929311 -138587726 - B2_Mm2 SINE B2 -9 186 1 4 668 3375 81 134 2 chr6 10929329 10929852 -138587185 - Lx3_Mus LINE L1 -8 7001 6410 4 668 456 86 0 0 chr6 10930210 10930280 -138586757 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 4 668 2206 246 57 14 chr6 10930294 10930870 -138586167 - Lx2B LINE L1 -7 6993 6393 4 668 271 324 29 0 chr6 10931118 10931223 -138585814 + MLT1C LTR MaLR 343 450 -17 4 668 262 284 159 35 chr6 10932094 10932207 -138584830 + B1_Mm SINE Alu 8 134 -13 4 668 684 45 0 0 chr6 10932207 10932295 -138584742 + (GA)n Simple_repeat Simple_repeat 1 88 0 4 668 367 287 65 8 chr6 10932410 10932533 -138584504 + MLT1A LTR MaLR 29 158 -216 4 668 1017 322 68 18 chr6 10932687 10933129 -138583908 + MER31A LTR ERV1 22 485 0 4 668 666 271 58 52 chr6 10933484 10933675 -138583362 + B3A SINE B2 7 198 0 4 668 311 346 53 121 chr6 10935543 10935882 -138581155 - MTEa LTR MaLR -63 316 1 4 668 248 328 0 0 chr6 10936081 10936148 -138580889 + MTE2a LTR MaLR 6 72 -307 4 668 249 367 0 30 chr6 10936381 10936482 -138580555 - Lx8 LINE L1 -236 7237 7140 4 668 419 375 27 10 chr6 10936483 10936777 -138580260 - Lx8 LINE L1 -536 6937 6639 4 668 269 406 76 6 chr6 10936917 10937088 -138579949 + MTE2a LTR MaLR 173 355 -24 4 668 1665 215 84 24 chr6 10938550 10938965 -138578072 - RMER1B Other Other -1 1065 626 4 668 501 333 18 18 chr6 10938973 10939144 -138577893 + RMER1A Other Other 26 196 -834 4 668 663 152 0 0 chr6 10939219 10939337 -138577700 - Lx LINE L1 -7 6647 6530 4 668 667 132 26 17 chr6 10939337 10939453 -138577584 - RLTR9C LTR ERVK 0 393 277 4 668 499 108 0 0 chr6 10939453 10939527 -138577510 - ETnERV2-int LTR ERVK -2 7404 7331 4 668 632 123 38 0 chr6 10939743 10939849 -138577188 - ETnERV2-int LTR ERVK -984 6422 6313 4 668 407 205 60 0 chr6 10939840 10939923 -138577114 - ETnERV2-int LTR ERVK -4823 2583 2496 4 668 3536 190 63 80 chr6 10939950 10941030 -138576007 - MMETn-int LTR ERVK -3675 1169 108 4 668 347 226 18 45 chr6 10941047 10941158 -138575879 - MMETn-int LTR ERVK -4736 108 1 4 668 1829 148 93 73 chr6 10941159 10941544 -138575493 - RLTR9C LTR ERVK 0 393 1 4 668 658 162 17 0 chr6 10941544 10941661 -138575376 - Lx2 LINE L1 -114 6883 6765 4 668 1468 119 0 0 chr6 10941650 10941860 -138575177 - Lx2 LINE L1 -352 6645 6436 4 668 2225 87 6 23 chr6 10941857 10942211 -138574826 + MusHAL1 LINE L1 657 1004 -1708 5 668 2877 158 20 40 chr6 10942205 10942776 -138574261 + Lx2 LINE L1 5165 5686 -200 5 668 2757 189 27 16 chr6 10942776 10943329 -138573708 - Lx LINE L1 0 6654 6096 5 668 2643 136 3 57 chr6 10943329 10943794 -138573243 + Lx2 LINE L1 5671 6016 -981 5 668 184 358 17 52 chr6 10943977 10944092 -138572945 - MIRb SINE MIR -99 169 59 5 668 385 255 13 111 chr6 10944112 10944125 -138572912 - CYRA11_Mm Unknown Y-chromosome -218 399 302 5 668 866 210 50 30 chr6 10944125 10944326 -138572711 + URR1A DNA MER1_type 1 205 -21 5 668 385 255 13 111 chr6 10944326 10944337 -138572700 - CYRA11_Mm Unknown Y-chromosome -218 301 197 5 668 441 0 0 0 chr6 10945378 10945427 -138571610 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 668 387 297 8 53 chr6 10945429 10945640 -138571397 + L1M3 LINE L1 5347 5548 -636 5 668 7037 271 24 27 chr6 10945627 10947543 -138569494 - Lx7 LINE L1 0 7696 5775 5 668 5658 158 32 10 chr6 10947543 10948548 -138568489 - Lx3B LINE L1 -1 6972 5946 5 668 7037 231 26 35 chr6 10948548 10950015 -138567022 - Lx7 LINE L1 -1922 5774 4302 5 668 310 340 53 10 chr6 10950025 10950233 -138566804 + L1M3 LINE L1 5511 5727 -457 5 668 234 191 0 0 chr6 10950259 10950301 -138566736 - Lx7 LINE L1 -914 6782 6741 5 668 1718 289 55 4 chr6 10950300 10950846 -138566191 + Lx7 LINE L1 6793 7366 -330 5 668 269 302 51 42 chr6 10950917 10951131 -138565906 + L1MB4 LINE L1 959 1174 -5433 5 668 321 343 46 17 chr6 10951221 10951396 -138565641 + MER34 LTR ERV1 360 539 -3 5 668 376 238 63 48 chr6 10951594 10951726 -138565311 + B1F2 SINE Alu 1 147 -2 5 668 324 333 40 47 chr6 10951733 10951881 -138565156 + RSINE1 SINE B4 11 157 -8 5 668 351 364 77 33 chr6 10952881 10953154 -138563883 + L1MC3 LINE L1 7255 7539 -246 5 668 1023 109 0 33 chr6 10953189 10953341 -138563696 - B1_Mm SINE Alu 0 147 1 5 668 194 0 0 37 chr6 10953350 10953377 -138563660 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 668 10072 86 7 2 chr6 10953382 10955454 -138561583 - L1Md_F2 LINE L1 -10 6572 4488 5 668 15160 99 23 6 chr6 10955446 10958418 -138558619 - L1Md_F2 LINE L1 -2469 3414 389 5 668 21 71 0 0 chr6 10958922 10958964 -138558073 + AT_rich Low_complexity Low_complexity 1 42 0 5 668 214 250 0 0 chr6 10959399 10959447 -138557590 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 668 432 55 0 0 chr6 10959632 10959687 -138557350 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 5 668 21 36 0 0 chr6 10960192 10960220 -138556817 + AT_rich Low_complexity Low_complexity 1 28 0 5 668 836 266 21 41 chr6 10960519 10960762 -138556275 - ORR1E LTR MaLR -118 241 4 5 668 239 114 0 22 chr6 10961413 10961458 -138555579 + (GGA)n Simple_repeat Simple_repeat 2 45 0 5 668 293 353 9 31 chr6 10961502 10961609 -138555428 + PB1D10 SINE Alu 4 115 -34 5 668 202 200 25 62 chr6 10962188 10962268 -138554769 + (TTATA)n Simple_repeat Simple_repeat 5 81 0 5 668 24 0 0 0 chr6 10962279 10962303 -138554734 + AT_rich Low_complexity Low_complexity 1 24 0 5 668 239 54 27 0 chr6 10962804 10962841 -138554196 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 5 668 6015 234 44 9 chr6 10962842 10964332 -138552705 - Lx5 LINE L1 -15 7035 5486 5 668 30067 154 34 33 chr6 10964363 10966091 -138550946 + L1_Mus1 LINE L1 222 1947 -3936 5 668 3265 41 5 0 chr6 10966091 10966485 -138550552 + MTA_Mm LTR MaLR 1 396 0 5 668 30067 105 13 4 chr6 10966485 10971053 -138545984 + L1_Mus1 LINE L1 1948 6561 -6 5 668 856 78 15 8 chr6 10971056 10971186 -138545851 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 5 668 3842 202 84 39 chr6 10971187 10972229 -138544808 - L1_Mur2 LINE L1 -384 5493 4405 5 668 2511 147 18 2 chr6 10972227 10972678 -138544359 - L1_Mur2 LINE L1 -3155 2722 2265 5 668 1736 215 69 46 chr6 10972737 10973546 -138543491 - L1_Mur2 LINE L1 -4210 1667 888 5 668 348 43 0 0 chr6 10973616 10973662 -138543375 + (T)n Simple_repeat Simple_repeat 1 46 0 5 668 392 87 0 28 chr6 10974107 10974178 -138542859 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 5 668 469 271 72 18 chr6 10974423 10974645 -138542392 + Charlie2b DNA MER1_type 2432 2665 -117 5 668 7055 92 10 3 chr6 10974702 10975809 -138541228 - L1_Mus2 LINE L1 0 6566 5452 5 668 22 0 0 0 chr6 10976007 10976029 -138541008 + AT_rich Low_complexity Low_complexity 1 22 0 5 668 202 216 39 0 chr6 10976779 10976830 -138540207 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 5 668 1190 269 48 24 chr6 10977378 10977709 -138539328 - Lx9 LINE L1 -215 7429 7091 5 668 274 221 21 0 chr6 10977735 10977830 -138539207 + CT-rich Low_complexity Low_complexity 1 97 0 5 668 6926 83 14 14 chr6 10978034 10979009 -138538028 + L1_Mus2 LINE L1 5592 6566 0 5 668 6323 116 36 53 chr6 10979055 10980270 -138536767 - Lx LINE L1 -6 6648 5446 5 668 423 0 0 0 chr6 10980270 10980317 -138536720 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 668 4549 183 32 16 chr6 10980317 10980845 -138536192 - Lx LINE L1 -438 5445 4913 5 668 35444 68 10 3 chr6 10980887 10987323 -138529714 - L1Md_F2 LINE L1 0 6582 100 5 668 234 217 0 0 chr6 10987354 10987400 -138529637 - Lx LINE L1 -955 4928 4883 5 668 1526 227 94 115 chr6 10987854 10988500 -138528537 + RMER13B LTR ERVK 272 904 -4 5 668 387 302 77 8 chr6 10988619 10988749 -138528288 - MTEb LTR MaLR -39 340 202 5 668 570 261 7 29 chr6 10988961 10989099 -138527938 + B1_Mus1 SINE Alu 1 135 -13 5 668 537 144 0 0 chr6 10989107 10989197 -138527840 + (A)n Simple_repeat Simple_repeat 1 90 0 5 668 4416 153 27 7 chr6 10990357 10991085 -138525952 + Lx2 LINE L1 5903 6643 -354 5 668 1247 157 0 0 chr6 10991085 10991295 -138525742 + Lx2 LINE L1 6775 6984 -13 5 668 4416 153 27 7 chr6 10991295 10991318 -138525719 + Lx2 LINE L1 6644 6668 -329 5 668 2161 237 124 48 chr6 10991323 10992194 -138524843 - MTC-int LTR MaLR -174 1084 4 5 668 1863 214 49 12 chr6 10992195 10992601 -138524436 - MTC LTR MaLR 0 421 1 5 668 27 62 0 0 chr6 10993000 10993048 -138523989 + AT_rich Low_complexity Low_complexity 1 48 0 5 668 1029 105 0 7 chr6 10993859 10994013 -138523024 + B2_Mm2 SINE B2 38 190 -5 5 668 715 213 122 38 chr6 10994025 10994111 -138522926 - Lx7 LINE L1 -27 7669 7577 5 668 308 24 24 0 chr6 10994111 10994152 -138522885 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 668 715 213 122 38 chr6 10994152 10994214 -138522823 - Lx7 LINE L1 -120 7576 7508 5 668 375 41 0 0 chr6 10994214 10994263 -138522774 + (CAA)n Simple_repeat Simple_repeat 2 50 0 5 668 715 213 122 38 chr6 10994263 10994401 -138522636 - Lx7 LINE L1 -189 7507 7359 5 668 1191 229 29 131 chr6 10994415 10994610 -138522427 - Lx7 LINE L1 -155 7541 7348 5 668 423 56 0 0 chr6 10994610 10994664 -138522373 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 668 387 0 0 0 chr6 10994664 10994706 -138522331 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 668 1191 229 29 131 chr6 10994706 10994997 -138522040 - Lx7 LINE L1 -349 7347 7105 5 668 444 220 76 12 chr6 10994974 10995109 -138521928 - Lx7 LINE L1 -838 6858 6719 5 668 244 219 66 66 chr6 10995585 10995707 -138521330 + RLTR15 LTR ERVK 219 340 -19 5 668 839 45 0 26 chr6 10995876 10995990 -138521047 + B1_Mm SINE Alu 37 147 0 5 668 216 231 10 87 chr6 10996485 10996589 -138520448 + GA-rich Low_complexity Low_complexity 1 96 0 5 668 198 167 0 0 chr6 10996913 10996949 -138520088 + A-rich Low_complexity Low_complexity 5 40 0 5 668 2428 294 44 77 chr6 10997082 10998441 -138518596 + MYSERV-int LTR ERVK 3775 5088 -1462 5 668 274 284 78 0 chr6 10998441 10998543 -138518494 + RMER4A LTR ERVK 239 348 -118 5 668 369 145 0 0 chr6 10998545 10998607 -138518430 + (CTA)n Simple_repeat Simple_repeat 1 62 0 5 668 270 289 19 67 chr6 10998609 10998713 -138518324 + RMER4A LTR ERVK 457 555 -30 5 668 497 154 143 67 chr6 10998715 10998829 -138518208 + MYSERV-int LTR ERVK 5336 5448 -1102 5 668 1178 101 0 11 chr6 10998829 10999010 -138518027 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 5 668 497 154 143 67 chr6 10999010 10999104 -138517933 + MYSERV-int LTR ERVK 5449 5560 -990 5 668 2773 185 20 53 chr6 10999107 10999765 -138517272 + MYSERV6-int LTR ERVK 8322 8957 -2 5 668 583 282 35 35 chr6 10999767 10999998 -138517039 + RLTR15 LTR ERVK 1 231 -128 5 668 24 0 0 0 chr6 11000524 11000548 -138516489 + AT_rich Low_complexity Low_complexity 1 24 0 1 668 207 0 0 0 chr6 11001700 11001723 -138515314 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 668 22 56 0 0 chr6 11002834 11002870 -138514167 + AT_rich Low_complexity Low_complexity 1 36 0 3 668 369 298 0 58 chr6 11003255 11003272 -138513765 - MLT1A0 LTR MaLR -4 361 350 4 668 3431 25 2 2 chr6 11003272 11003668 -138513369 - MTA_Mm LTR MaLR 0 396 1 5 668 369 298 0 58 chr6 11003668 11003771 -138513266 - MLT1A0 LTR MaLR -16 349 248 4 668 348 376 70 35 chr6 11004215 11004386 -138512651 - MLT1A0 LTR MaLR -193 181 5 4 668 22 80 0 0 chr6 11004683 11004733 -138512304 + AT_rich Low_complexity Low_complexity 1 50 0 6 668 5665 84 21 1 chr6 11004990 11005779 -138511258 - L1_Mus1 LINE L1 0 6567 5763 7 668 244 272 0 47 chr6 11005933 11006018 -138511019 + L1M5 LINE L1 4811 4891 -1255 8 668 2649 98 9 55 chr6 11006709 11007131 -138509906 + RLTR9D LTR ERVK 1 403 0 9 668 1576 111 14 42 chr6 11008374 11008657 -138508380 + Lx LINE L1 6378 6652 -2 1 668 181 57 28 28 chr6 11009118 11009154 -138507883 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 668 321 265 53 105 chr6 11009213 11009365 -138507672 + B4A SINE B4 76 219 -73 1 668 950 104 0 0 chr6 11009238 11009372 -138507665 + B1_Mm SINE Alu 13 146 -1 1 668 203 0 37 0 chr6 11009377 11009404 -138507633 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 1 83 719 322 105 76 chr6 11009797 11010321 -138506716 + MER34A1 LTR ERV1 49 587 0 1 669 181 366 44 50 chr6 11013457 11013638 -138503399 + MIR SINE MIR 57 236 -26 1 669 463 253 3 3 chr6 11014706 11015029 -138502008 + (CA)n Simple_repeat Simple_repeat 1 323 0 1 669 324 130 0 53 chr6 11015034 11015091 -138501946 + HAL1-3A_ME LINE L1 1976 2029 -829 1 669 316 256 4 8 chr6 11015091 11015340 -138501697 + (CA)n Simple_repeat Simple_repeat 1 248 0 1 669 328 244 0 32 chr6 11015391 11015577 -138501460 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 669 332 175 0 10 chr6 11015609 11015707 -138501330 + (CA)n Simple_repeat Simple_repeat 1 97 0 1 669 1599 198 77 18 chr6 11016515 11016916 -138500121 - Lx2B LINE L1 -653 6347 5923 2 669 2416 219 42 28 chr6 11016903 11017449 -138499588 + Lx2B LINE L1 6446 6999 -1 2 669 528 146 0 0 chr6 11017480 11017569 -138499468 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 669 217 98 0 47 chr6 11017569 11017612 -138499425 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 2 669 373 349 57 29 chr6 11017695 11017975 -138499062 - L1MD1 LINE L1 -136 6106 5819 2 669 204 222 0 36 chr6 11018047 11018103 -138498934 + T-rich Low_complexity Low_complexity 3 56 0 2 669 372 43 0 0 chr6 11019521 11019567 -138497470 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 669 454 276 40 70 chr6 11019695 11019894 -138497143 - B3A SINE B2 -5 193 1 2 669 1496 298 18 10 chr6 11020097 11020494 -138496543 + MTD LTR MaLR 6 405 -14 2 669 180 77 0 0 chr6 11021192 11021218 -138495819 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 669 216 365 0 50 chr6 11021228 11021329 -138495708 + PB1D10 SINE Alu 2 97 -20 2 669 202 200 0 43 chr6 11021335 11021382 -138495655 + GA-rich Low_complexity Low_complexity 1 45 0 3 669 972 181 46 9 chr6 11021829 11022046 -138494991 + URR1B DNA MER1_type 1 225 0 3 669 21 0 0 0 chr6 11022227 11022248 -138494789 + AT_rich Low_complexity Low_complexity 1 21 0 3 669 398 263 30 76 chr6 11022964 11023227 -138493810 - Lx7 LINE L1 -1 7695 7445 3 669 183 113 57 0 chr6 11023323 11023376 -138493661 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 3 669 892 270 16 37 chr6 11023493 11023739 -138493298 - Lx7 LINE L1 -961 6735 6495 3 669 1698 258 29 21 chr6 11023750 11024229 -138492808 + RLTR16 LTR ERVK 1 483 -22 3 669 762 244 99 0 chr6 11024410 11024631 -138492406 - Lx7 LINE L1 -1204 6492 6250 3 669 1889 78 0 19 chr6 11024939 11025202 -138491835 + L1_Mus1 LINE L1 6310 6567 0 3 669 1431 183 58 43 chr6 11025378 11025808 -138491229 - RMER17C LTR ERVK -519 439 16 3 669 1961 174 62 35 chr6 11025811 11026150 -138490887 - RMER17C-int LTR ERVK 0 3238 2896 3 669 3273 43 2 0 chr6 11026150 11026543 -138490494 + MTA_Mm LTR MaLR 1 394 -2 3 669 8268 66 13 4 chr6 11026545 11027633 -138489404 + MTA_Mm-int LTR MaLR 1 1098 0 3 669 3338 40 2 0 chr6 11027633 11028028 -138489009 + MTA_Mm LTR MaLR 1 396 0 3 669 1961 126 420 15 chr6 11028028 11028280 -138488757 - RMER17C-int LTR ERVK -343 2895 2533 3 669 730 169 71 7 chr6 11028266 11028421 -138488616 - RMER17C-int LTR ERVK -877 2361 2197 3 669 806 214 250 31 chr6 11028432 11028788 -138488249 - RMER17C-int LTR ERVK -1251 1987 1554 3 669 393 75 0 0 chr6 11028886 11028939 -138488098 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 669 540 231 274 67 chr6 11029587 11029870 -138487167 - RMER17C-int LTR ERVK -2896 342 1 3 669 1272 180 63 109 chr6 11029870 11030300 -138486737 - RMER17C LTR ERVK 0 410 1 3 669 1029 103 7 0 chr6 11031623 11031769 -138485268 - B1_Mus1 SINE Alu -1 147 1 4 669 1678 176 31 45 chr6 11031778 11032135 -138484902 - Lx LINE L1 -8 6646 6295 4 669 403 236 11 11 chr6 11032110 11032200 -138484837 + Lx LINE L1 6186 6275 -379 4 669 22 35 0 0 chr6 11032809 11032838 -138484199 + AT_rich Low_complexity Low_complexity 1 29 0 4 669 455 317 0 0 chr6 11033211 11033334 -138483703 - MTEa LTR MaLR -116 263 141 4 669 326 77 0 0 chr6 11033747 11033799 -138483238 - Lx3_Mus LINE L1 -944 6065 6014 4 669 6062 105 17 18 chr6 11033799 11034748 -138482289 + Lx3_Mus LINE L1 6062 7009 0 4 669 1696 219 53 3 chr6 11035698 11036056 -138480981 + RLTR11A LTR ERVK 1 376 -152 4 669 304 222 0 0 chr6 11036057 11036129 -138480908 + Lx6 LINE L1 7389 7460 0 4 669 207 114 0 0 chr6 11036310 11036345 -138480692 + (A)n Simple_repeat Simple_repeat 1 35 0 4 669 450 226 85 0 chr6 11036923 11037029 -138480008 + B3A SINE B2 1 115 -83 4 669 351 0 0 0 chr6 11037070 11037109 -138479928 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 669 4287 97 22 11 chr6 11037134 11037778 -138479259 + Lx3_Mus LINE L1 6359 7009 0 5 669 1696 219 53 3 chr6 11038728 11039086 -138477951 + RLTR11A LTR ERVK 1 376 -152 5 669 304 222 0 0 chr6 11039087 11039159 -138477878 + Lx6 LINE L1 7389 7460 0 5 669 189 121 0 0 chr6 11039340 11039373 -138477664 + (A)n Simple_repeat Simple_repeat 1 33 0 5 669 450 226 85 0 chr6 11039951 11040057 -138476980 + B3A SINE B2 1 115 -83 5 669 333 0 0 0 chr6 11040098 11040135 -138476902 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 669 4583 91 5 9 chr6 11040160 11040814 -138476223 + Lx3_Mus LINE L1 6359 7009 0 5 669 238 275 9 29 chr6 11041341 11041446 -138475591 + A-rich Low_complexity Low_complexity 4 106 0 5 669 321 313 151 36 chr6 11041784 11042089 -138474948 + L1M5 LINE L1 3537 3876 -2270 5 669 5138 75 1 28 chr6 11042176 11042892 -138474145 + L1Md_F2 LINE L1 5883 6579 -3 5 669 1103 243 65 7 chr6 11043245 11043523 -138473514 + Lx5 LINE L1 6746 7039 -11 6 669 321 135 0 0 chr6 11043532 11043584 -138473453 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 6 669 1235 291 85 47 chr6 11043617 11044148 -138472889 - Lx8 LINE L1 -193 7280 6730 6 669 1037 280 50 52 chr6 11044150 11044512 -138472525 - Lx8 LINE L1 -892 6581 6221 6 669 631 302 75 37 chr6 11044720 11045365 -138471672 - Lx8 LINE L1 -1301 6172 5464 6 669 3204 69 0 0 chr6 11045397 11045805 -138471232 - L1Md_F2 LINE L1 -388 6194 5787 6 669 906 119 0 0 chr6 11045806 11045949 -138471088 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 6 669 21121 86 2 6 chr6 11045951 11049628 -138467409 - L1Md_F2 LINE L1 -19 6563 2904 6 669 233 205 0 0 chr6 11049623 11049669 -138467368 - L1Md_F LINE L1 -6197 322 283 6 669 1196 317 105 21 chr6 11049670 11050761 -138466276 - Lx8 LINE L1 -477 5403 4221 6 669 213 226 0 0 chr6 11050819 11050872 -138466165 + T-rich Low_complexity Low_complexity 1 53 0 6 669 302 103 0 93 chr6 11050877 11050952 -138466085 - Lx2A LINE L1 -1 7007 6940 6 669 351 98 0 0 chr6 11050951 11051002 -138466035 + Lx2A LINE L1 6625 6675 -333 6 669 648 275 104 20 chr6 11051000 11051345 -138465692 - Lx8 LINE L1 -1739 4141 3768 6 669 21 0 0 0 chr6 11051564 11051585 -138465452 + AT_rich Low_complexity Low_complexity 1 21 0 7 669 21 0 0 0 chr6 11051721 11051742 -138465295 + AT_rich Low_complexity Low_complexity 1 21 0 7 669 510 302 88 42 chr6 11052200 11052562 -138464475 - Lx8 LINE L1 -1014 6459 6075 7 669 25 0 0 0 chr6 11054936 11054961 -138462076 + AT_rich Low_complexity Low_complexity 1 25 0 7 669 3005 129 65 7 chr6 11055476 11056343 -138460694 + RMER17B LTR ERVK 6 953 -5 7 669 1923 142 3 50 chr6 11058391 11058753 -138458284 - RMER17A2 LTR ERVK -561 345 1 7 669 5543 178 67 7 chr6 11059022 11060038 -138456999 - Lx2B LINE L1 -4 6996 5920 7 669 6431 146 39 9 chr6 11060603 11062056 -138454981 - Lx LINE L1 -7 6647 5144 7 669 319 322 62 22 chr6 11062154 11062332 -138454705 + L1MD LINE L1 2974 3158 -2988 7 669 6170 193 46 83 chr6 11062584 11064427 -138452610 - Lx5 LINE L1 0 7050 5215 7 669 253 369 46 12 chr6 11064665 11064838 -138452199 + MIR SINE MIR 2 180 -82 8 669 5110 161 25 12 chr6 11066441 11067383 -138449654 + Lx2 LINE L1 6034 6988 -9 8 669 21 0 0 0 chr6 11069192 11069213 -138447824 + AT_rich Low_complexity Low_complexity 1 21 0 8 669 513 294 19 62 chr6 11069220 11069430 -138447607 - B3 SINE B2 -15 201 1 8 669 4288 14 14 0 chr6 11070426 11070912 -138446125 - MT2_Mm LTR ERVL 0 493 1 8 669 314 0 0 0 chr6 11070912 11070950 -138446087 - MERVL-int LTR ERVL 0 5485 5448 8 669 375 179 46 35 chr6 11070950 11071037 -138446000 - ORR1A3-int LTR MaLR -1323 640 553 8 669 40482 16 14 0 chr6 11071037 11076324 -138440713 - MERVL-int LTR ERVL -125 5360 1 8 669 3591 14 139 0 chr6 11076324 11076757 -138440280 - MT2_Mm LTR ERVL 0 493 1 8 669 1062 95 0 0 chr6 11077771 11077919 -138439118 - B1_Mus1 SINE Alu 0 148 1 8 669 760 294 96 23 chr6 11078619 11078922 -138438115 + ORR1D2 LTR MaLR 46 370 0 8 669 2043 211 46 35 chr6 11080018 11080537 -138436500 - Lx5 LINE L1 -591 6459 5935 8 669 519 250 6 37 chr6 11080533 11080695 -138436342 + L1_Mur2 LINE L1 5115 5271 -606 8 669 6525 128 40 3 chr6 11080696 11082151 -138434886 + Lx LINE L1 5141 6648 -6 9 669 3082 186 30 0 chr6 11082134 11082725 -138434312 + L1_Mur2 LINE L1 5269 5877 0 8 669 357 188 72 0 chr6 11083510 11083579 -138433458 + B4 SINE B4 2 75 -217 9 669 4994 78 13 9 chr6 11083592 11084274 -138432763 - L1Md_F2 LINE L1 -17 6565 5881 9 669 5408 50 0 0 chr6 11084274 11084935 -138432102 + L1Md_F2 LINE L1 5178 5838 -45 9 669 491 342 47 43 chr6 11084935 11085170 -138431867 + B4 SINE B4 54 289 -3 9 669 316 69 69 0 chr6 11085211 11085269 -138431768 + (TCTCCC)n Simple_repeat Simple_repeat 4 65 0 9 669 566 39 13 0 chr6 11085271 11085348 -138431689 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 669 624 27 0 0 chr6 11086276 11086350 -138430687 + (CA)n Simple_repeat Simple_repeat 1 74 0 9 669 25 0 0 0 chr6 11086469 11086494 -138430543 + AT_rich Low_complexity Low_complexity 1 25 0 9 669 222 374 18 18 chr6 11086709 11086818 -138430219 + MER5B DNA MER1_type 70 178 0 9 669 288 111 0 0 chr6 11087244 11087289 -138429748 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 669 276 314 103 40 chr6 11087375 11087550 -138429487 - MIRb SINE MIR -38 230 42 1 669 504 323 61 52 chr6 11087607 11087819 -138429218 + MTEa LTR MaLR 5 218 -161 1 669 23 33 0 0 chr6 11088635 11088665 -138428372 + AT_rich Low_complexity Low_complexity 1 30 0 1 669 26 50 0 0 chr6 11089054 11089094 -138427943 + AT_rich Low_complexity Low_complexity 1 40 0 1 669 4824 236 17 34 chr6 11089196 11089346 -138427691 - Lx7 LINE L1 -208 7488 7357 1 669 207 0 0 0 chr6 11089346 11089369 -138427668 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 669 4824 236 17 34 chr6 11089369 11090276 -138426761 - Lx7 LINE L1 -340 7356 6451 1 669 3349 66 28 0 chr6 11090276 11090700 -138426337 + RLTR10C LTR ERVK 1 436 0 1 669 4824 236 17 34 chr6 11090700 11090818 -138426219 - Lx7 LINE L1 -1246 6450 6332 1 669 491 139 0 0 chr6 11090821 11090893 -138426144 + 7SK RNA RNA 170 241 -90 1 669 2707 274 44 26 chr6 11090903 11091677 -138425360 + Lx6 LINE L1 6672 7459 -1 1 669 946 350 100 26 chr6 11092206 11093005 -138424032 + Lx7 LINE L1 6584 7445 -28 1 669 997 282 104 3 chr6 11093036 11093363 -138423674 + Lx9 LINE L1 6323 6682 -962 1 669 2105 108 16 0 chr6 11093411 11093727 -138423310 + L1_Mus3 LINE L1 6315 6635 -3 1 669 549 0 0 0 chr6 11093970 11094031 -138423006 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 669 517 323 27 5 chr6 11094942 11095129 -138421908 - B3A SINE B2 -4 194 4 1 669 372 61 0 0 chr6 11095573 11095622 -138421415 + HAL1-3A_ME LINE L1 1974 2022 -836 1 669 423 160 0 0 chr6 11095629 11095704 -138421333 + (CATATA)n Simple_repeat Simple_repeat 6 80 0 1 669 324 158 0 0 chr6 11095795 11095852 -138421185 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 669 297 0 0 0 chr6 11096779 11096812 -138420225 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 669 1449 228 20 212 chr6 11097634 11098390 -138418647 - RMER19C LTR ERVK 0 611 1 1 669 229 341 55 39 chr6 11098400 11098528 -138418509 - MER63D DNA AcHobo -691 370 241 1 669 23 54 0 0 chr6 11098871 11098908 -138418129 + AT_rich Low_complexity Low_complexity 1 37 0 1 669 292 320 104 42 chr6 11099282 11099569 -138417468 + L1MC3 LINE L1 7078 7382 -403 1 669 227 175 0 0 chr6 11100720 11100788 -138416249 + (CTTG)n Simple_repeat Simple_repeat 1 68 0 1 669 275 333 20 0 chr6 11100788 11100887 -138416150 - B1_Mur3 SINE Alu -7 142 42 1 669 350 143 31 0 chr6 11100890 11100988 -138416049 + CT-rich Low_complexity Low_complexity 3 103 0 1 669 609 197 0 87 chr6 11101382 11101532 -138415505 - Lx7 LINE L1 0 7696 7560 1 669 859 209 25 5 chr6 11101529 11101731 -138415306 - Lx6 LINE L1 -1538 5922 5717 1 669 2069 258 107 4 chr6 11101854 11102771 -138414266 + Lx6 LINE L1 6439 7449 -11 1 669 703 211 47 9 chr6 11102785 11102996 -138414041 - Lx7 LINE L1 -122 7574 7356 1 669 23 68 0 0 chr6 11103002 11103046 -138413991 + AT_rich Low_complexity Low_complexity 1 44 0 1 669 2603 242 36 3 chr6 11103046 11103646 -138413391 - Lx7 LINE L1 -336 7360 6740 1 669 492 18 0 0 chr6 11103646 11103703 -138413334 + (TAG)n Simple_repeat Simple_repeat 3 59 0 1 669 2603 242 36 3 chr6 11103703 11103741 -138413296 - Lx7 LINE L1 -957 6739 6702 1 669 269 51 26 0 chr6 11105697 11105736 -138411301 + (CATA)n Simple_repeat Simple_repeat 1 40 0 1 669 353 286 78 37 chr6 11106119 11106444 -138410593 - L1MC4 LINE L1 -4712 1599 1251 1 669 436 282 51 0 chr6 11106844 11106961 -138410076 + B1F SINE Alu 22 144 -5 1 669 378 0 0 0 chr6 11107240 11107282 -138409755 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 669 232 271 0 28 chr6 11107285 11107357 -138409680 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1 669 588 328 109 21 chr6 11107405 11107598 -138409439 - B4 SINE B4 -80 212 3 1 669 23 33 0 0 chr6 11108556 11108586 -138408451 + AT_rich Low_complexity Low_complexity 1 30 0 1 669 298 341 52 73 chr6 11108658 11108794 -138408243 + B1F SINE Alu 16 148 -1 1 669 583 240 131 30 chr6 11108925 11109123 -138407914 - ORR1C2 LTR MaLR 0 384 167 1 669 248 211 13 0 chr6 11109131 11109207 -138407830 + GA-rich Low_complexity Low_complexity 2 78 0 1 669 1229 218 29 102 chr6 11109231 11109558 -138407479 - ORR1B1 LTR MaLR -18 376 92 1 669 354 400 16 32 chr6 11109723 11109909 -138407128 - ID_B1 SINE B4 -33 191 9 1 669 414 39 0 0 chr6 11110493 11110545 -138406492 + (TGG)n Simple_repeat Simple_repeat 2 53 0 1 669 301 352 45 18 chr6 11110558 11110668 -138406369 - RSINE1 SINE B4 -41 124 12 1 669 32575 53 11 4 chr6 11111470 11116808 -138400229 + L1Md_T LINE L1 121 5589 -297 1 669 8395 38 0 0 chr6 11116808 11117803 -138399234 + L1Md_T LINE L1 5590 6584 -1 1 669 246 32 0 0 chr6 11118302 11118333 -138398704 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 669 552 143 0 0 chr6 11118338 11118436 -138398601 + (TG)n Simple_repeat Simple_repeat 2 99 0 1 669 2820 101 10 5 chr6 11119607 11119626 -138397411 + MTB LTR MaLR 1 23 -377 1 669 395 38 19 0 chr6 11119626 11119679 -138397358 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 669 2820 101 10 5 chr6 11119679 11120057 -138396980 + MTB LTR MaLR 24 400 0 1 669 401 375 31 44 chr6 11120169 11120395 -138396642 + B4A SINE B4 70 292 0 1 669 195 162 0 0 chr6 11120433 11120470 -138396567 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 669 361 350 75 40 chr6 11120547 11120773 -138396264 - MLT1A0 LTR MaLR -35 330 97 1 669 662 245 160 7 chr6 11120970 11121258 -138395779 + Lx9 LINE L1 7313 7644 0 1 669 226 184 0 0 chr6 11121632 11121681 -138395356 + L1MC4a LINE L1 7019 7067 -815 1 669 219 114 0 0 chr6 11121981 11122016 -138395021 + (CAT)n Simple_repeat Simple_repeat 1 35 0 1 669 187 325 12 36 chr6 11123342 11123425 -138393612 + L2b LINE L2 3084 3164 -211 1 669 21 36 0 0 chr6 11123456 11123484 -138393553 + AT_rich Low_complexity Low_complexity 1 28 0 1 669 213 39 0 0 chr6 11124020 11124046 -138392991 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 669 210 105 0 0 chr6 11125472 11125510 -138391527 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 669 444 170 0 0 chr6 11125538 11125644 -138391393 + (TG)n Simple_repeat Simple_repeat 2 107 0 1 669 688 29 10 10 chr6 11127050 11127154 -138389883 - L1Md_F2 LINE L1 -2 6580 6477 1 669 5367 99 1 2 chr6 11127155 11127955 -138389082 - L1_Mm LINE L1 -673 5210 4412 1 669 7729 49 6 4 chr6 11127935 11128963 -138388074 - L1Md_F3 LINE L1 0 6584 5558 1 669 3909 71 7 3 chr6 11128962 11129528 -138387509 - L1Md_F LINE L1 -1456 4427 3860 1 669 1121 114 211 0 chr6 11129527 11129798 -138387239 - L1Md_F LINE L1 -5923 693 195 1 669 3138 177 47 11 chr6 11130311 11130454 -138386583 + L1Md_F LINE L1 331 467 -6149 1 669 2102 129 0 6 chr6 11130454 11130767 -138386270 + RLTR10E LTR ERVK 1 311 0 1 669 3138 181 45 11 chr6 11130767 11131257 -138385780 + L1Md_F LINE L1 468 984 -5650 1 669 272 86 0 0 chr6 11131241 11131276 -138385761 + L1Md_F2 LINE L1 5552 5586 -297 1 669 6983 86 11 6 chr6 11131278 11132255 -138384782 + L1Md_F2 LINE L1 5589 6570 -12 1 669 26480 97 6 8 chr6 11132317 11136602 -138380435 + L1Md_F LINE L1 976 5255 -628 1 669 373 143 0 0 chr6 11136602 11136658 -138380379 + RLTR1B LTR ERV1 355 410 -102 1 669 1035 150 18 0 chr6 11136662 11136829 -138380208 + RLTR1B LTR ERV1 343 512 0 1 669 1082 98 25 0 chr6 11136829 11136992 -138380045 + RLTR1B-int LTR ERV1 1 167 -3132 1 669 13967 78 29 16 chr6 11137015 11139197 -138377840 + RLTR1B-int LTR ERV1 116 3990 -700 1 669 2661 40 85 0 chr6 11139176 11139529 -138377508 + RLTR1B-int LTR ERV1 2917 3299 0 1 669 1237 181 101 39 chr6 11139529 11139967 -138377070 + RLTR1B LTR ERV1 1 436 -76 1 669 180 0 0 0 chr6 11139967 11139987 -138377050 + (A)n Simple_repeat Simple_repeat 1 20 0 1 669 4561 74 0 0 chr6 11139987 11140607 -138376430 + L1_Mm LINE L1 5243 5862 -21 1 669 3105 115 0 19 chr6 11140607 11141086 -138375951 + L1Md_F2 LINE L1 6112 6581 -1 1 670 480 319 62 16 chr6 11141264 11141570 -138375467 + L1MA4 LINE L1 5570 5889 -411 1 670 906 71 110 0 chr6 11141682 11141809 -138375228 + B2_Mm1a SINE B2 1 141 -52 1 670 288 174 28 50 chr6 11141858 11142039 -138374998 + (TA)n Simple_repeat Simple_repeat 2 178 0 1 670 229 200 26 39 chr6 11142163 11142241 -138374796 + A-rich Low_complexity Low_complexity 6 82 0 1 670 252 0 0 0 chr6 11142888 11142916 -138374121 + (A)n Simple_repeat Simple_repeat 1 28 0 1 670 25 90 0 0 chr6 11144445 11144512 -138372525 + AT_rich Low_complexity Low_complexity 1 67 0 1 670 705 232 97 6 chr6 11144936 11145101 -138371936 - MTC LTR MaLR -56 365 186 1 670 1064 61 8 0 chr6 11145106 11145238 -138371799 - B1_Mus2 SINE Alu -13 134 2 1 670 862 264 82 55 chr6 11145238 11145706 -138371331 + RMER2 LTR ERV1 25 555 -12 1 670 1482 201 51 0 chr6 11145717 11146090 -138370947 - L1_Mur3 LINE L1 -1358 4522 4131 1 670 6302 110 43 9 chr6 11146107 11147131 -138369906 - Lx LINE L1 -7 6647 5589 1 670 261 0 0 0 chr6 11147162 11147191 -138369846 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 670 617 317 51 12 chr6 11147197 11147250 -138369787 - L1_Mur3 LINE L1 -1685 4162 4109 1 670 1128 76 0 7 chr6 11147250 11147396 -138369641 - B1_Mus2 SINE Alu -1 146 2 1 670 1320 174 50 0 chr6 11147396 11147674 -138369363 - L1_Mur3 LINE L1 -1739 4108 3815 1 670 522 0 0 0 chr6 11148428 11148486 -138368551 + (TAA)n Simple_repeat Simple_repeat 3 60 0 1 670 272 327 35 17 chr6 11149496 11149611 -138367426 - B4A SINE B4 -92 200 84 1 670 4978 160 5 2 chr6 11149775 11150610 -138366427 - Lx3B LINE L1 -5 6968 6132 1 670 2946 118 45 29 chr6 11150632 11151149 -138365888 + Lx3B LINE L1 5588 6112 -861 1 670 365 340 0 36 chr6 11151226 11151336 -138365701 - PB1D10 SINE Alu -10 107 2 1 670 181 347 13 13 chr6 11151416 11151492 -138365545 + L2a LINE L2 3351 3426 0 1 670 267 229 0 0 chr6 11153079 11153197 -138363840 + (CA)n Simple_repeat Simple_repeat 1 118 0 1 670 244 224 0 13 chr6 11153199 11153276 -138363761 + (CAGAGA)n Simple_repeat Simple_repeat 3 78 0 1 670 272 75 29 97 chr6 11153630 11153733 -138363304 + A-rich Low_complexity Low_complexity 2 97 0 1 670 341 326 133 5 chr6 11153733 11153921 -138363116 - Lx8 LINE L1 -146 7327 7116 1 670 404 224 9 53 chr6 11153935 11154048 -138362989 - Lx8 LINE L1 -1069 6404 6297 1 670 261 98 0 0 chr6 11154053 11154094 -138362943 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 670 36492 11 1 7 chr6 11155463 11160870 -138356167 + L1Md_A LINE L1 214 5586 -297 1 670 8846 14 0 0 chr6 11160870 11161866 -138355171 + L1Md_A LINE L1 5587 6582 0 1 670 376 153 233 0 chr6 11162148 11162244 -138354793 - B1_Mus1 SINE Alu -21 129 5 1 670 6517 106 12 23 chr6 11162320 11163721 -138353316 - L1_Mus3 LINE L1 0 6638 5253 1 670 255 190 0 0 chr6 11164190 11164248 -138352789 + GA-rich Low_complexity Low_complexity 3 60 0 2 670 367 283 27 20 chr6 11164271 11164419 -138352618 + CT-rich Low_complexity Low_complexity 3 151 0 2 670 450 36 0 0 chr6 11164545 11164601 -138352436 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 670 3307 36 8 0 chr6 11164654 11165047 -138351990 + MTA_Mm LTR MaLR 1 396 0 2 670 1704 165 94 0 chr6 11165199 11165550 -138351487 + Lx2B LINE L1 6615 6998 -2 2 670 220 306 14 0 chr6 11167304 11167376 -138349661 - B4A SINE B4 -163 129 57 2 670 600 53 0 0 chr6 11167406 11167482 -138349555 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 670 32 0 0 0 chr6 11169383 11169415 -138347622 + AT_rich Low_complexity Low_complexity 1 32 0 2 670 353 314 57 21 chr6 11169436 11169576 -138347461 - RSINE1 SINE B4 -2 163 19 2 670 2031 203 186 54 chr6 11169751 11170034 -138347003 - RMER6C LTR ERVK 0 690 375 2 670 243 0 0 0 chr6 11170034 11170061 -138346976 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 670 267 31 0 0 chr6 11170061 11170092 -138346945 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 670 2031 203 186 54 chr6 11170092 11170415 -138346622 - RMER6C LTR ERVK -316 374 4 2 670 564 89 0 0 chr6 11170819 11170898 -138346139 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 670 21 0 0 0 chr6 11171050 11171071 -138345966 + AT_rich Low_complexity Low_complexity 1 21 0 2 670 312 189 53 5 chr6 11171177 11171267 -138345770 - L1_Mur3 LINE L1 -375 5787 5651 2 670 20574 89 1 2 chr6 11171280 11174920 -138342117 + L1Md_F2 LINE L1 2987 6582 0 2 670 1171 271 76 51 chr6 11174920 11175430 -138341607 - L1_Mur3 LINE L1 -3465 2415 1881 2 670 231 36 0 0 chr6 11175430 11175458 -138341579 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 670 1171 239 48 71 chr6 11175458 11175926 -138341111 - L1_Mur3 LINE L1 -4000 1880 1427 2 670 1431 84 9 5 chr6 11176044 11176258 -138340779 - L1Md_F LINE L1 -2584 3299 3085 2 670 3604 144 17 39 chr6 11176244 11177398 -138339639 - L1Md_F LINE L1 -4086 1797 670 2 670 2905 256 68 1 chr6 11177925 11178676 -138338361 - Lx6 LINE L1 -11 7449 6649 2 670 1031 210 38 41 chr6 11178676 11178949 -138338088 - RMER19B LTR ERVK 0 902 359 2 670 826 278 160 67 chr6 11179013 11179356 -138337681 - MTD LTR MaLR -14 386 12 2 670 224 30 30 0 chr6 11179621 11179654 -138337383 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 670 978 93 0 54 chr6 11179654 11179801 -138337236 - B1_Mus1 SINE Alu -9 139 1 2 670 306 67 0 0 chr6 11179801 11179846 -138337191 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 2 670 1341 181 16 0 chr6 11179877 11180125 -138336912 + Lx2B LINE L1 6744 6995 -5 2 670 215 339 77 0 chr6 11180355 11180420 -138336617 - ID4 SINE ID -10 73 4 2 670 451 329 13 26 chr6 11180500 11180653 -138336384 + RSINE1 SINE B4 2 152 -13 2 670 4395 66 3 16 chr6 11180969 11181540 -138335497 - LTRIS2 LTR ERV1 0 564 1 2 670 4086 121 13 73 chr6 11181706 11182484 -138334553 + RMER17A LTR ERVK 1 731 -20 2 670 5543 100 35 7 chr6 11182600 11183428 -138333609 - L1_Mur1 LINE L1 -12 5874 5024 2 670 222 214 0 0 chr6 11183675 11183731 -138333306 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 670 990 127 0 0 chr6 11183935 11184077 -138332960 + B1_Mus1 SINE Alu 3 144 -4 2 670 281 89 11 92 chr6 11184077 11184164 -138332873 + A-rich Low_complexity Low_complexity 1 80 0 2 670 23 86 0 0 chr6 11185549 11185607 -138331430 + AT_rich Low_complexity Low_complexity 1 58 0 2 670 616 341 19 16 chr6 11185761 11186274 -138330763 - L1M2 LINE L1 -838 5305 4783 2 670 228 35 0 0 chr6 11186764 11186793 -138330244 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 670 641 154 171 0 chr6 11186793 11186910 -138330127 - B1_Mus1 SINE Alu -9 139 3 2 670 1050 32 0 0 chr6 11186920 11187046 -138329991 + (TC)n Simple_repeat Simple_repeat 2 127 0 2 670 1306 259 36 95 chr6 11187266 11187710 -138329327 + MTC LTR MaLR 1 418 -3 2 670 4518 81 49 3 chr6 11187982 11188617 -138328420 - RLTR13D4 LTR ERVK 0 1033 370 2 670 2426 196 61 12 chr6 11188643 11188683 -138328354 - RLTR20A2 LTR ERVK -47 531 492 2 670 426 69 0 0 chr6 11188683 11188741 -138328296 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 670 2426 196 61 12 chr6 11188741 11189206 -138327831 - RLTR20A2 LTR ERVK -87 491 2 2 670 369 299 41 20 chr6 11189316 11189463 -138327574 + RMER5 LTR ERV1 385 534 0 2 670 3219 100 41 39 chr6 11189563 11190074 -138326963 - RLTR1B LTR ERV1 0 512 1 2 670 3272 38 8 0 chr6 11190074 11190466 -138326571 - MTA_Mm LTR MaLR -1 395 1 2 670 6322 90 26 11 chr6 11191190 11191684 -138325353 + L1_Mus3 LINE L1 5707 6220 -418 2 670 3282 51 2 0 chr6 11191684 11192079 -138324958 + MTA_Mm LTR MaLR 1 396 0 2 670 6322 90 26 11 chr6 11192079 11192501 -138324536 + L1_Mus3 LINE L1 6221 6637 -1 2 670 504 0 0 0 chr6 11196487 11196543 -138320494 + (TTG)n Simple_repeat Simple_repeat 2 57 0 2 670 726 62 0 0 chr6 11196543 11196639 -138320398 - B1_Mus2 SINE Alu -6 141 46 2 670 308 159 77 31 chr6 11196581 11196646 -138320391 - RLTR25A LTR ERVK -521 582 515 2 670 331 380 129 46 chr6 11196855 11197203 -138319834 + L1M4b LINE L1 17 393 -6941 2 670 844 305 111 19 chr6 11197411 11197942 -138319095 + L1M4b LINE L1 694 1273 -6061 2 670 186 192 0 0 chr6 11197997 11198049 -138318988 + (TTG)n Simple_repeat Simple_repeat 2 53 0 2 670 1190 48 0 7 chr6 11198129 11198277 -138318760 - B1_Mus2 SINE Alu 0 147 1 2 670 527 305 17 0 chr6 11198477 11198595 -138318442 + B3A SINE B2 2 121 -77 2 670 31 0 0 0 chr6 11198814 11198845 -138318192 + AT_rich Low_complexity Low_complexity 1 31 0 2 670 240 35 0 0 chr6 11198958 11198987 -138318050 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 670 295 308 41 33 chr6 11199317 11199438 -138317599 - ORR1E LTR MaLR -2 377 256 2 670 2353 171 67 24 chr6 11199514 11199809 -138317228 - MT2B LTR ERVL 0 601 295 2 670 5952 64 48 0 chr6 11199809 11200580 -138316457 - RLTR13C2 LTR ERVK 0 808 1 2 670 2353 171 67 24 chr6 11200580 11200735 -138316302 - MT2B LTR ERVL -307 294 132 2 670 943 162 36 6 chr6 11200711 11200879 -138316158 - ORR1A4-int LTR MaLR -1413 550 378 2 670 34379 29 21 27 chr6 11200884 11205115 -138311922 + L1Md_A LINE L1 643 4923 -960 2 670 227 283 31 61 chr6 11205115 11205213 -138311824 - RMER20A LTR ERVK -236 280 186 2 670 34379 29 21 27 chr6 11205213 11205867 -138311170 + L1Md_A LINE L1 4924 5586 -297 2 670 8226 37 5 1 chr6 11205867 11206859 -138310178 + L1Md_T LINE L1 5587 6582 0 2 670 1153 202 107 0 chr6 11206922 11207165 -138309872 + IAPEY3_LTR LTR ERVK 14 282 -50 2 670 1684 201 55 0 chr6 11207184 11207548 -138309489 - ORR1A4-int LTR MaLR -1579 384 1 2 670 1572 174 6 69 chr6 11207548 11207882 -138309155 - ORR1A4 LTR MaLR 0 329 17 2 670 405 306 124 0 chr6 11207882 11208003 -138309034 - ORR1E LTR MaLR -223 136 1 2 670 500 285 110 35 chr6 11208155 11208355 -138308682 - B3A SINE B2 0 216 2 2 670 22 70 0 0 chr6 11208401 11208444 -138308593 + AT_rich Low_complexity Low_complexity 1 43 0 2 670 343 143 11 21 chr6 11210062 11210155 -138306882 + (TCTCTG)n Simple_repeat Simple_repeat 4 95 0 2 670 343 365 62 91 chr6 11211908 11212116 -138304921 + B3 SINE B2 2 203 -13 2 670 23 54 0 0 chr6 11212152 11212189 -138304848 + AT_rich Low_complexity Low_complexity 1 37 0 2 670 25 0 0 0 chr6 11212326 11212351 -138304686 + AT_rich Low_complexity Low_complexity 1 25 0 2 670 3269 268 19 10 chr6 11212449 11213225 -138303812 + Lx7 LINE L1 6325 7107 -589 2 670 1675 241 36 55 chr6 11213241 11213439 -138303598 + MTC LTR MaLR 1 210 -211 2 670 1516 22 50 0 chr6 11213439 11213621 -138303416 + B2_Mm1a SINE B2 2 192 -1 2 670 1675 241 36 55 chr6 11213621 11213843 -138303194 + MTC LTR MaLR 211 413 -8 2 670 1118 229 109 50 chr6 11213861 11213967 -138303070 + MTC-int LTR MaLR 56 161 -1097 2 670 866 108 70 0 chr6 11213967 11214096 -138302941 + B1_Mus1 SINE Alu 1 138 -10 2 670 579 51 0 0 chr6 11214096 11214175 -138302862 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 2 670 1118 229 109 50 chr6 11214175 11214389 -138302648 + MTC-int LTR MaLR 162 395 -863 2 670 3448 210 76 18 chr6 11214389 11215249 -138301788 + RMER1A Other Other 242 1025 -5 2 670 207 152 0 0 chr6 11215255 11215301 -138301736 + GA-rich Low_complexity Low_complexity 3 48 0 2 670 3395 234 81 19 chr6 11215306 11216131 -138300906 + MTC-int LTR MaLR 383 1258 0 2 670 323 194 15 15 chr6 11216131 11216199 -138300838 + MTC LTR MaLR 1 68 -353 2 670 318 62 62 0 chr6 11216453 11216518 -138300519 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 2 670 25 0 0 0 chr6 11216665 11216690 -138300347 + AT_rich Low_complexity Low_complexity 1 25 0 2 670 2506 134 10 2 chr6 11217055 11217452 -138299585 + Lx LINE L1 6249 6648 -6 2 670 22 0 0 0 chr6 11217503 11217525 -138299512 + AT_rich Low_complexity Low_complexity 1 22 0 2 670 1218 290 178 30 chr6 11217964 11218469 -138298568 - MTE-int LTR MaLR -136 1444 865 2 670 1077 291 61 18 chr6 11218811 11219154 -138297883 - ORR1D1 LTR MaLR 0 374 17 2 670 418 343 21 4 chr6 11219177 11219417 -138297620 - L1MB8 LINE L1 -296 5882 5639 2 670 435 83 0 0 chr6 11219607 11219667 -138297370 + (TTCA)n Simple_repeat Simple_repeat 3 62 0 2 670 279 205 118 59 chr6 11219667 11219778 -138297259 - Lx4B LINE L1 -18 7040 6921 2 670 776 360 60 15 chr6 11219833 11220233 -138296804 - MTE-int LTR MaLR -1122 458 41 2 670 392 360 79 58 chr6 11220403 11220680 -138296357 - MTEa LTR MaLR -94 285 3 2 670 836 241 127 4 chr6 11221927 11222164 -138294873 + MTD LTR MaLR 148 413 -6 2 670 26 98 0 0 chr6 11222404 11222486 -138294551 + AT_rich Low_complexity Low_complexity 1 82 0 2 670 667 234 272 9 chr6 11224087 11224433 -138292604 + Lx4B LINE L1 6605 7041 -17 2 670 324 0 0 0 chr6 11224438 11224474 -138292563 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 2 670 403 373 77 19 chr6 11224546 11224702 -138292335 + RSINE1 SINE B4 1 165 0 2 670 1081 204 14 5 chr6 11224753 11224965 -138292072 - URR1A DNA MER1_type 0 226 13 2 670 531 143 0 9 chr6 11225078 11225191 -138291846 + Lx9 LINE L1 7532 7643 -1 2 670 23 0 0 0 chr6 11227017 11227040 -138289997 + AT_rich Low_complexity Low_complexity 1 23 0 2 670 626 278 78 0 chr6 11227068 11227259 -138289778 - B3 SINE B2 -10 206 1 2 670 794 314 63 26 chr6 11227591 11227862 -138289175 + B4 SINE B4 12 292 0 2 670 26 64 0 0 chr6 11228123 11228170 -138288867 + AT_rich Low_complexity Low_complexity 1 47 0 2 670 225 0 0 0 chr6 11228702 11228727 -138288310 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 670 25 90 0 0 chr6 11229384 11229451 -138287586 + AT_rich Low_complexity Low_complexity 1 67 0 3 670 2800 245 70 75 chr6 11230746 11231682 -138285355 - RMER1C Other Other 0 1342 411 3 670 202 206 27 0 chr6 11231756 11231829 -138285208 + (CATA)n Simple_repeat Simple_repeat 4 78 0 3 670 1152 295 56 17 chr6 11232893 11233477 -138283560 - L1MA6 LINE L1 -200 6100 5495 3 670 183 239 0 61 chr6 11233732 11233781 -138283256 + L3 LINE CR1 3072 3117 -1372 3 670 858 270 85 15 chr6 11234896 11235266 -138281771 - L1MA8 LINE L1 -278 6034 5648 3 670 338 264 127 52 chr6 11235290 11235542 -138281495 + L1M2 LINE L1 4562 4832 -1311 3 670 30784 69 9 15 chr6 11235563 11236352 -138280685 - L1Md_F2 LINE L1 -4 6578 5785 3 670 1632 26 0 0 chr6 11236352 11236541 -138280496 + B2_Mm1a SINE B2 2 190 -3 3 670 30784 82 4 90 chr6 11236541 11240658 -138276379 - L1Md_F2 LINE L1 -96 5787 2109 3 670 788 10 0 0 chr6 11240658 11240759 -138276278 - L1Md_T LINE L1 -1 6581 6481 3 670 30784 129 7 50 chr6 11240759 11242470 -138274567 - L1Md_F2 LINE L1 -3775 2108 442 3 670 2568 73 2 89 chr6 11242657 11243062 -138273975 + L1_Mus2 LINE L1 6176 6545 -21 3 670 634 300 108 25 chr6 11243056 11243529 -138273508 + Lx7 LINE L1 6924 7464 -9 3 670 1089 323 134 22 chr6 11244002 11244668 -138272369 - Lx8 LINE L1 -9 7464 6725 3 670 565 281 58 6 chr6 11244819 11244991 -138272046 - Lx8 LINE L1 -1020 6453 6273 3 670 711 159 0 13 chr6 11244991 11245144 -138271893 + L1_Mus4 LINE L1 6485 6635 -1 3 670 931 261 113 13 chr6 11245677 11245987 -138271050 - MTE2b LTR MaLR -13 366 26 3 670 1690 86 101 29 chr6 11246389 11246665 -138270372 - Lx2 LINE L1 -2 6995 6700 3 670 5958 174 30 5 chr6 11246665 11247801 -138269236 - L1_Mm LINE L1 -111 5772 4609 3 670 240 100 0 0 chr6 11247814 11247854 -138269183 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 3 670 189 0 0 0 chr6 11248887 11248908 -138268129 + (A)n Simple_repeat Simple_repeat 1 21 0 3 670 3669 19 0 0 chr6 11249838 11250263 -138266774 + L1Md_T LINE L1 5162 5586 -297 3 670 8932 5 0 3 chr6 11250263 11251262 -138265775 + L1Md_T LINE L1 5587 6582 0 3 670 247 151 53 70 chr6 11251501 11251558 -138265479 - PB1D9 SINE Alu 0 120 65 3 670 575 292 0 14 chr6 11251513 11251652 -138265385 - ID_B1 SINE B4 -8 216 80 3 670 23 33 0 0 chr6 11252370 11252400 -138264637 + AT_rich Low_complexity Low_complexity 1 30 0 3 670 235 274 202 70 chr6 11252724 11252838 -138264199 + RSINE1 SINE B4 2 130 -35 3 670 807 40 0 0 chr6 11252857 11252956 -138264081 + (CA)n Simple_repeat Simple_repeat 1 99 0 3 670 244 210 32 0 chr6 11253291 11253353 -138263684 + Lx6 LINE L1 7382 7445 -15 3 670 196 137 19 19 chr6 11253354 11253406 -138263631 + (TAA)n Simple_repeat Simple_repeat 3 54 0 3 670 522 314 87 42 chr6 11254111 11254400 -138262637 + RLTR17 LTR ERVK 125 426 -266 3 670 726 296 10 0 chr6 11254974 11255177 -138261860 + B3 SINE B2 5 209 -7 3 670 375 391 15 0 chr6 11255275 11255408 -138261629 - RSINE1 SINE B4 -29 136 2 3 670 208 353 44 29 chr6 11256303 11256440 -138260597 - L3b LINE CR1 -208 274 136 3 670 2332 50 0 13 chr6 11257131 11257437 -138259600 - L1Md_F3 LINE L1 0 6584 6283 3 670 1026 32 0 0 chr6 11257437 11257560 -138259477 + L1_Mm LINE L1 5332 5454 -429 3 670 23 33 0 0 chr6 11258434 11258464 -138258573 + AT_rich Low_complexity Low_complexity 1 30 0 3 670 353 275 105 62 chr6 11258496 11258823 -138258214 - ORR1E LTR MaLR -48 330 4 3 670 468 62 0 0 chr6 11259107 11259171 -138257866 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 670 440 382 57 72 chr6 11259183 11259448 -138257589 - B4 SINE B4 -18 274 14 3 670 623 308 180 21 chr6 11259993 11260427 -138256610 - MLT1D LTR MaLR 0 505 3 3 670 270 327 81 49 chr6 11260857 11261201 -138255836 - L1M5 LINE L1 -1872 4274 3920 3 670 530 41 14 0 chr6 11261609 11261682 -138255355 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 670 180 0 0 0 chr6 11263024 11263044 -138253993 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3 670 452 315 160 37 chr6 11263130 11263430 -138253607 - MLT1A0 LTR MaLR 0 365 29 3 670 1792 131 0 7 chr6 11263820 11264105 -138252932 + Lx LINE L1 6372 6654 0 3 670 705 334 69 67 chr6 11264208 11264583 -138252454 - MTEb LTR MaLR -3 376 1 3 670 1446 201 27 86 chr6 11264941 11265349 -138251688 + ORR1C2 LTR MaLR 1 384 0 3 670 21 0 0 0 chr6 11266252 11266273 -138250764 + AT_rich Low_complexity Low_complexity 1 21 0 3 670 3709 242 90 34 chr6 11266274 11267435 -138249602 - Lx9 LINE L1 0 7644 6419 3 670 240 179 0 0 chr6 11267888 11267966 -138249071 + T-rich Low_complexity Low_complexity 1 78 0 3 670 979 46 122 0 chr6 11267970 11268101 -138248936 - B1_Mus2 SINE Alu 0 147 1 3 670 390 274 19 93 chr6 11268428 11268589 -138248448 - MamSINE1 SINE tRNA -140 150 2 3 670 533 152 40 0 chr6 11268857 11268956 -138248081 - URR1B DNA MER1_type -1 224 122 3 670 245 253 24 24 chr6 11269113 11269198 -138247839 + (CATATA)n Simple_repeat Simple_repeat 5 89 0 3 670 996 291 104 44 chr6 11269421 11269763 -138247274 - ORR1E LTR MaLR 0 384 1 3 670 291 279 12 37 chr6 11269763 11269833 -138247204 - MTE-int LTR MaLR -63 1517 1450 3 670 767 296 19 76 chr6 11269831 11270094 -138246943 - MTD LTR MaLR -167 252 5 3 670 2404 154 109 0 chr6 11270669 11271071 -138245966 - RLTR41 LTR ERV1 0 446 1 3 670 312 303 79 37 chr6 11271459 11271675 -138245362 + L1MD LINE L1 2746 2970 -3176 3 83 333 352 111 32 chr6 11271909 11272370 -138244667 + L1M4 LINE L1 3781 4277 -1869 3 671 6347 99 27 1 chr6 11272396 11273303 -138243734 + L1_Mus3 LINE L1 5667 6568 -70 3 671 1187 219 28 7 chr6 11273543 11273870 -138243167 + Lx LINE L1 798 1144 -5840 3 671 2427 197 27 3 chr6 11273863 11274585 -138242452 + Lx2B LINE L1 1203 1734 -2180 3 671 1087 62 0 70 chr6 11274585 11274757 -138242280 + L1Md_F3 LINE L1 6424 6583 -1 3 671 7008 126 11 2 chr6 11274757 11276046 -138240991 + Lx LINE L1 5347 6647 -7 3 671 1040 131 0 5 chr6 11276130 11276346 -138240691 + (GAAA)n Simple_repeat Simple_repeat 1 215 0 3 671 1896 78 31 0 chr6 11278412 11278669 -138238368 - L1_Mus1 LINE L1 0 6567 6303 3 671 24 0 0 0 chr6 11281973 11281997 -138235040 + AT_rich Low_complexity Low_complexity 1 24 0 3 671 279 157 0 0 chr6 11282456 11282507 -138234530 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 671 902 103 0 0 chr6 11283691 11283827 -138233210 - Lx LINE L1 -1 6653 6518 3 671 432 0 0 0 chr6 11284554 11284602 -138232435 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 671 23 33 0 0 chr6 11285753 11285783 -138231254 + AT_rich Low_complexity Low_complexity 1 30 0 3 671 243 61 0 0 chr6 11285846 11285879 -138231158 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 3 671 223 340 35 70 chr6 11285879 11286050 -138230987 - L2a LINE L2 -13 3413 3249 3 671 5195 5 0 0 chr6 11286330 11286909 -138230128 - L1Md_A LINE L1 0 6582 6004 3 671 4621 82 2 2 chr6 11287109 11287730 -138229307 + L1Md_F2 LINE L1 5949 6569 -13 3 671 28 86 0 0 chr6 11287787 11287857 -138229180 + AT_rich Low_complexity Low_complexity 1 70 0 3 671 258 100 33 16 chr6 11287903 11287964 -138229073 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 671 225 226 0 0 chr6 11288289 11288342 -138228695 + CT-rich Low_complexity Low_complexity 2 54 0 3 671 340 276 53 45 chr6 11288476 11288528 -138228509 - MT2B LTR ERVL -467 134 84 3 671 225 0 0 0 chr6 11288528 11288553 -138228484 + (TAA)n Simple_repeat Simple_repeat 1 25 0 3 671 340 276 53 45 chr6 11288553 11288633 -138228404 - MT2B LTR ERVL -518 83 1 3 671 1296 38 0 0 chr6 11288669 11288827 -138228210 + (GGGAGA)n Simple_repeat Simple_repeat 4 161 0 3 671 202 132 26 0 chr6 11288862 11288900 -138228137 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 3 671 711 278 169 7 chr6 11288939 11289229 -138227808 - ORR1E LTR MaLR -2 357 21 3 671 387 289 124 29 chr6 11289229 11289730 -138227307 - L1_Rod LINE L1 -679 5624 5079 3 671 21 36 0 0 chr6 11289794 11289822 -138227215 + AT_rich Low_complexity Low_complexity 1 28 0 3 671 1275 24 1 42 chr6 11290521 11291335 -138225702 + (CA)n Simple_repeat Simple_repeat 1 780 0 3 671 267 288 12 48 chr6 11291687 11291771 -138225266 + B4A SINE B4 6 86 -206 3 671 229 191 21 0 chr6 11291974 11292021 -138225016 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 671 425 171 11 0 chr6 11292024 11292112 -138224925 + (TATG)n Simple_repeat Simple_repeat 2 90 0 3 671 2765 70 20 97 chr6 11293182 11293638 -138223399 - BGLII LTR ERVK 0 421 1 3 671 1735 132 61 26 chr6 11294112 11294422 -138222615 - RLTR26 LTR ERVK -321 321 1 3 671 598 304 130 16 chr6 11294440 11294465 -138222572 - L1M2 LINE L1 -475 5816 5785 3 671 261 0 0 0 chr6 11294465 11294494 -138222543 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 671 598 304 130 16 chr6 11294494 11294837 -138222200 - L1M2 LINE L1 -507 5784 5408 3 671 1793 244 52 2 chr6 11294837 11295342 -138221695 - MT2A LTR ERVL -2 531 2 3 671 598 304 130 16 chr6 11295342 11295403 -138221634 - L1M2 LINE L1 -884 5407 5337 3 671 1992 282 96 26 chr6 11295428 11296020 -138221017 + Lx6 LINE L1 6792 7696 0 3 671 723 104 113 0 chr6 11296043 11296158 -138220879 - Lx2 LINE L1 -1283 5714 5587 3 671 447 298 181 20 chr6 11296187 11296541 -138220496 + L1MC3 LINE L1 6210 6626 -1159 3 671 995 303 10 86 chr6 11296541 11296949 -138220088 - MTE2b LTR MaLR -2 377 1 3 671 447 298 181 20 chr6 11296949 11296998 -138220039 + L1MC3 LINE L1 6627 6678 -1107 3 671 626 292 141 36 chr6 11297274 11297763 -138219274 + L1MC3 LINE L1 7401 7874 -121 3 671 1807 247 33 37 chr6 11297777 11298260 -138218777 + Lx6 LINE L1 6383 6863 -597 3 671 3111 139 89 56 chr6 11298278 11298349 -138218688 - RMER17D2 LTR ERVK -20 789 715 3 671 351 0 0 0 chr6 11298349 11298388 -138218649 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 671 3111 139 89 56 chr6 11298388 11299080 -138217957 - RMER17D2 LTR ERVK -95 714 1 3 671 458 172 0 10 chr6 11299108 11299152 -138217885 + polypurine Low_complexity Low_complexity 2 45 0 4 671 884 129 0 7 chr6 11299152 11299300 -138217737 + (GAA)n Simple_repeat Simple_repeat 3 149 0 4 671 458 172 0 10 chr6 11299300 11299355 -138217682 + polypurine Low_complexity Low_complexity 46 100 0 4 671 850 276 31 16 chr6 11299380 11299634 -138217403 + Lx6 LINE L1 6879 7136 -324 3 671 432 0 0 0 chr6 11299646 11299694 -138217343 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 4 671 6454 124 16 3 chr6 11299694 11300698 -138216339 - Lx3A LINE L1 -14 6967 5951 4 671 2044 121 36 0 chr6 11300698 11301005 -138216032 - L1_Mur1 LINE L1 -12 5874 5557 4 671 2122 102 43 0 chr6 11300996 11301318 -138215719 + L1_Mur1 LINE L1 5246 5581 -305 4 671 1090 206 28 25 chr6 11301366 11301649 -138215388 - Lx7 LINE L1 -8 7688 7405 4 671 933 150 17 44 chr6 11301650 11301719 -138215318 + Lx3B LINE L1 6794 6861 -112 4 671 488 16 0 16 chr6 11301719 11301781 -138215256 + (GGGTG)n Simple_repeat Simple_repeat 1 61 0 4 671 933 150 17 44 chr6 11301781 11301892 -138215145 + Lx3B LINE L1 6862 6969 -4 4 671 36 40 0 0 chr6 11301964 11302014 -138215023 + AT_rich Low_complexity Low_complexity 1 50 0 4 671 21 0 0 0 chr6 11302023 11302044 -138214993 + AT_rich Low_complexity Low_complexity 1 21 0 4 671 495 311 97 37 chr6 11302069 11302286 -138214751 + Lx6 LINE L1 7089 7318 -142 4 671 1942 123 47 6 chr6 11302286 11302605 -138214432 - Lx LINE L1 -1 6653 6322 4 671 3540 128 22 0 chr6 11302605 11303152 -138213885 + Lx LINE L1 5793 6351 -303 4 671 286 260 99 40 chr6 11303139 11303291 -138213746 + Lx6 LINE L1 7300 7460 0 3 671 197 319 103 31 chr6 11304295 11304392 -138212645 - L2b LINE L2 0 3375 3272 4 671 227 330 97 0 chr6 11304985 11305088 -138211949 - L2a LINE L2 -42 3384 3272 4 671 898 301 104 21 chr6 11305282 11305665 -138211372 + Lx5 LINE L1 6634 7379 -81 4 671 792 234 241 34 chr6 11305883 11306206 -138210831 - MTD LTR MaLR -14 405 16 4 671 565 288 28 34 chr6 11308375 11308517 -138208520 + RMER30 DNA MER1_type 8 149 -53 4 671 2176 57 26 23 chr6 11308517 11308822 -138208215 - L1Md_F3 LINE L1 0 6584 6279 4 671 565 288 28 34 chr6 11308822 11308855 -138208182 + RMER30 DNA MER1_type 150 182 -20 4 671 555 62 0 0 chr6 11308890 11308970 -138208067 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 671 438 338 41 67 chr6 11309102 11309445 -138207592 - MT2A LTR ERVL -195 338 5 4 671 295 314 108 58 chr6 11309907 11310130 -138206907 + L2a LINE L2 3193 3426 0 4 671 21 57 0 0 chr6 11310221 11310256 -138206781 + AT_rich Low_complexity Low_complexity 1 35 0 4 671 243 88 0 0 chr6 11310609 11310643 -138206394 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 4 671 385 294 175 0 chr6 11310661 11310787 -138206250 - RSINE1 SINE B4 -17 148 1 4 671 31 0 0 0 chr6 11311227 11311258 -138205779 + AT_rich Low_complexity Low_complexity 1 31 0 4 671 2244 306 82 30 chr6 11311668 11312465 -138204572 + Lx8 LINE L1 6399 7236 -237 4 671 204 97 0 0 chr6 11312465 11312496 -138204541 + (TGG)n Simple_repeat Simple_repeat 1 31 0 4 671 2244 306 82 30 chr6 11312496 11312691 -138204346 + Lx8 LINE L1 7237 7442 -31 4 671 31 0 0 0 chr6 11313124 11313155 -138203882 + AT_rich Low_complexity Low_complexity 1 31 0 4 671 200 227 0 0 chr6 11313363 11313407 -138203630 + A-rich Low_complexity Low_complexity 6 49 0 4 671 369 361 0 19 chr6 11314981 11315139 -138201898 + C-rich Low_complexity Low_complexity 5 159 0 4 671 195 69 0 0 chr6 11315839 11315868 -138201169 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 671 29484 106 20 29 chr6 11316005 11319552 -138197485 + L1Md_F2 LINE L1 414 3957 -1926 4 671 228 159 22 22 chr6 11319552 11319597 -138197440 - Charlie24 DNA MER1_type -1147 1303 1259 4 671 29484 106 20 29 chr6 11319597 11321224 -138195813 + L1Md_F2 LINE L1 3958 5584 -299 4 671 7124 87 7 24 chr6 11321227 11322238 -138194799 + L1Md_F2 LINE L1 5588 6581 -1 4 671 565 230 29 0 chr6 11322759 11322898 -138194139 + B1_Mus1 SINE Alu 1 143 -5 4 671 288 0 0 0 chr6 11322913 11322945 -138194092 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 671 432 0 0 0 chr6 11322945 11322993 -138194044 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 671 2887 161 8 4 chr6 11322998 11323503 -138193534 - Lx2 LINE L1 -584 6413 5907 4 671 4449 186 18 82 chr6 11323501 11324020 -138193017 + L1_Mur2 LINE L1 4417 4854 -1023 4 671 900 146 14 7 chr6 11324020 11324165 -138192872 - B1_Mus1 SINE Alu 0 148 3 4 671 4449 186 18 82 chr6 11324165 11324748 -138192289 + L1_Mur2 LINE L1 4855 5449 -428 4 671 381 278 67 8 chr6 11324756 11324890 -138192147 + L1_Mur1 LINE L1 212 353 -6631 4 671 4256 118 97 1 chr6 11324860 11325939 -138191098 + L1_Mur1 LINE L1 712 1894 -3992 4 671 1343 71 0 0 chr6 11325936 11326105 -138190932 + L1Md_F2 LINE L1 5416 5584 -299 4 671 7395 76 5 3 chr6 11326108 11327099 -138189938 + L1Md_F2 LINE L1 5588 6580 -2 4 671 204 163 0 0 chr6 11327102 11327145 -138189892 + A-rich Low_complexity Low_complexity 1 43 0 4 671 1142 119 0 25 chr6 11327155 11327354 -138189683 + L1_Mur1 LINE L1 1892 2085 -3801 4 671 2159 70 3 0 chr6 11327348 11327634 -138189403 - L1_Mus2 LINE L1 -194 6372 6086 4 671 1424 74 0 24 chr6 11327634 11327842 -138189195 + L1_Mus2 LINE L1 6362 6564 -2 4 671 466 146 45 0 chr6 11327856 11327945 -138189092 + L1_Mur1 LINE L1 2076 2168 -3718 4 671 5143 156 72 8 chr6 11327942 11328848 -138188189 + L1_Mus1 LINE L1 220 1185 -5431 4 671 2894 62 10 33 chr6 11328848 11329245 -138187792 + RLTR10 LTR ERVK 1 388 -2 4 671 21824 133 79 11 chr6 11329245 11334260 -138182777 + L1_Mus1 LINE L1 1186 6566 -1 4 671 14913 160 83 54 chr6 11334272 11334755 -138182282 + L1_Mur1 LINE L1 2149 2643 -3243 4 671 228 35 0 0 chr6 11334755 11334784 -138182253 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 671 14913 160 83 54 chr6 11334784 11337916 -138179121 + L1_Mur1 LINE L1 2644 5867 -19 4 671 2088 185 140 24 chr6 11337917 11338301 -138178736 + RMER17B LTR ERVK 1 437 -521 4 671 765 0 0 0 chr6 11338301 11338386 -138178651 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 671 2088 250 89 45 chr6 11338386 11338835 -138178202 + RMER17B LTR ERVK 438 938 -20 4 671 7109 111 35 4 chr6 11338842 11339942 -138177095 + Lx3_Mus LINE L1 5857 6991 -18 4 671 861 10 0 0 chr6 11339946 11340044 -138176993 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 4 671 2453 156 18 30 chr6 11340047 11340483 -138176554 + L1_Mm LINE L1 5453 5883 0 4 671 872 99 0 64 chr6 11340495 11340667 -138176370 + MTB-int LTR MaLR 938 1098 0 4 671 2300 118 41 17 chr6 11340667 11341029 -138176008 + MTB LTR MaLR 1 371 -29 4 671 367 314 40 113 chr6 11341050 11341449 -138175588 + L1M3 LINE L1 3728 4097 -2043 4 671 4213 254 44 8 chr6 11341494 11342537 -138174500 - Lx5 LINE L1 -5 7045 5967 4 671 419 297 98 5 chr6 11342627 11342820 -138174217 - MLT1B LTR MaLR -20 370 160 4 671 2644 176 49 4 chr6 11342953 11343544 -138173493 - Lx5 LINE L1 -1073 5977 5356 4 671 2094 190 88 42 chr6 11343533 11343766 -138173271 - Lx5 LINE L1 -1794 4083 3828 4 671 5117 52 0 5 chr6 11343766 11344407 -138172630 - L1Md_F3 LINE L1 -16 6568 5931 4 671 2094 190 88 42 chr6 11344407 11344677 -138172360 - Lx5 LINE L1 -2050 3827 3553 4 671 2245 122 40 17 chr6 11344677 11345028 -138172009 + RLTR10D LTR ERVK 1 359 0 4 671 2094 190 88 42 chr6 11345028 11345068 -138171969 - Lx5 LINE L1 -2325 3552 3514 4 671 6115 206 37 32 chr6 11345070 11346591 -138170446 - Lx5 LINE L1 -2926 2951 1423 4 671 2606 60 55 3 chr6 11346592 11346940 -138170097 - L1_Mus1 LINE L1 -6 6561 6196 4 671 2462 67 0 0 chr6 11346941 11347257 -138169780 + L1Md_F2 LINE L1 5882 6197 -385 4 671 741 207 8 59 chr6 11347257 11347493 -138169544 - Lx5 LINE L1 -4440 1437 1214 4 671 30 0 0 0 chr6 11347497 11347527 -138169510 + AT_rich Low_complexity Low_complexity 1 30 0 4 671 193 29 29 29 chr6 11347527 11347562 -138169475 + (TTATA)n Simple_repeat Simple_repeat 2 36 0 4 671 334 337 59 69 chr6 11347563 11347803 -138169234 + L1M2 LINE L1 3997 4234 -1909 4 671 3386 33 2 0 chr6 11347803 11348198 -138168839 - MTA_Mm LTR MaLR 0 396 1 4 671 334 337 59 69 chr6 11348198 11348349 -138168688 + L1M2 LINE L1 4235 4384 -1759 4 671 316 270 151 96 chr6 11350535 11350826 -138166211 + Lx8 LINE L1 7152 7458 -15 4 671 21 0 0 0 chr6 11352112 11352133 -138164904 + AT_rich Low_complexity Low_complexity 1 21 0 4 671 237 98 0 0 chr6 11352452 11352493 -138164544 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 4 671 444 19 0 0 chr6 11352496 11352549 -138164488 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 671 327 165 23 12 chr6 11352994 11353080 -138163957 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 671 5744 231 45 4 chr6 11353098 11353630 -138163407 - Lx6 LINE L1 -17 7443 6897 4 671 846 83 0 0 chr6 11353630 11353750 -138163287 + (TC)n Simple_repeat Simple_repeat 1 120 0 4 671 5744 231 45 4 chr6 11353750 11354471 -138162566 - Lx6 LINE L1 -564 6896 6141 4 671 639 60 0 0 chr6 11354768 11354852 -138162185 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 4 671 309 125 0 0 chr6 11354881 11354937 -138162100 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 671 8922 6 0 0 chr6 11356385 11357608 -138159429 - L1Md_A LINE L1 0 6582 5360 4 671 717 309 49 77 chr6 11357687 11358061 -138158976 + MER67C LTR ERV1 12 405 -306 4 671 1285 103 22 0 chr6 11358339 11358523 -138158514 + B2_Mm2 SINE B2 1 188 -7 4 671 802 248 78 12 chr6 11359435 11359678 -138157359 - L1_Rod LINE L1 -180 5667 5447 4 671 273 368 81 40 chr6 11359790 11359988 -138157049 + MLT1K LTR MaLR 156 361 -234 4 671 1352 211 33 89 chr6 11360156 11360434 -138156603 - Lx6 LINE L1 -1422 6038 5785 4 671 5088 80 4 3 chr6 11360434 11361120 -138155917 - L1Md_F2 LINE L1 -2 6580 5894 4 671 1352 211 33 89 chr6 11361120 11361236 -138155801 - Lx6 LINE L1 -1676 5784 5666 4 671 21 0 0 0 chr6 11361251 11361272 -138155765 + AT_rich Low_complexity Low_complexity 1 21 0 4 671 341 269 53 18 chr6 11361486 11361656 -138155381 + L1M3 LINE L1 2701 2876 -3264 4 671 235 312 70 19 chr6 11361845 11362002 -138155035 + L1M3 LINE L1 3496 3660 -2480 4 671 1537 212 136 88 chr6 11362025 11362593 -138154444 + Lx9 LINE L1 7048 7642 -2 4 671 387 0 0 0 chr6 11362949 11362992 -138154045 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 671 360 0 0 0 chr6 11362992 11363031 -138154006 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 671 333 228 27 80 chr6 11363467 11363577 -138153460 - Lx LINE L1 -57 6916 6790 4 671 656 266 85 8 chr6 11363574 11363809 -138153228 - Lx5 LINE L1 -784 6266 6014 4 671 1051 139 17 0 chr6 11363813 11363985 -138153052 + L1_Mur3 LINE L1 5706 5880 0 4 671 3614 171 1 23 chr6 11364010 11364670 -138152367 - Lx LINE L1 -4 6650 6005 4 671 585 121 30 10 chr6 11364678 11364778 -138152259 + B2_Mm2 SINE B2 92 193 -2 4 671 381 154 0 15 chr6 11364793 11364859 -138152178 - Lx LINE L1 -657 5997 5933 4 671 1933 166 0 0 chr6 11364862 11365181 -138151856 + L1_Mm LINE L1 5359 5677 -206 4 671 324 0 0 0 chr6 11365181 11365217 -138151820 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 4 671 7099 86 4 11 chr6 11365219 11366567 -138150470 - L1Md_F2 LINE L1 -21 6561 5224 4 671 1080 215 128 36 chr6 11366567 11366871 -138150166 + IAPEY3_LTR LTR ERVK 1 332 0 4 671 1578 116 4 0 chr6 11366872 11367113 -138149924 - L1Md_A LINE L1 -655 5228 4987 4 671 12521 28 1 1 chr6 11367110 11369261 -138147776 - L1Md_A LINE L1 0 6582 4432 4 671 6415 43 0 0 chr6 11369261 11370034 -138147003 - L1Md_T LINE L1 0 6582 5810 4 671 6628 47 1 23 chr6 11370034 11371675 -138145362 - L1Md_A LINE L1 -3822 2061 462 4 671 26317 101 13 4 chr6 11371676 11376217 -138140820 - L1Md_A LINE L1 -880 5003 423 4 671 1753 162 34 0 chr6 11376223 11376543 -138140494 + Lx5 LINE L1 5677 6007 -1043 4 671 421 311 71 22 chr6 11376666 11376850 -138140187 + MLT1B LTR MaLR 197 389 -1 4 671 668 287 136 22 chr6 11377125 11377928 -138139109 + L1M4 LINE L1 2140 3033 -3113 4 671 280 277 74 17 chr6 11378080 11378256 -138138781 + L1M4 LINE L1 3039 3224 -2922 4 671 37531 26 2 7 chr6 11378568 11383955 -138133082 + L1Md_A LINE L1 232 5586 -297 4 671 8395 34 0 0 chr6 11383955 11384951 -138132086 + L1Md_A LINE L1 5587 6582 0 4 671 1328 262 123 31 chr6 11384951 11385377 -138131660 + L1MB8 LINE L1 5651 6112 -66 5 671 3080 95 16 2 chr6 11385406 11385838 -138131199 - Lx3_Mus LINE L1 0 7009 6572 5 671 599 266 48 5 chr6 11386474 11386682 -138130355 - L1_Rod LINE L1 -6304 868 652 5 671 962 280 95 10 chr6 11387425 11387721 -138129316 - MTD LTR MaLR -38 381 61 5 671 1490 96 9 0 chr6 11389116 11389336 -138127701 - L1_Mus2 LINE L1 -2 6564 6343 5 671 321 326 93 0 chr6 11389913 11390042 -138126995 - B1F SINE Alu -5 144 4 5 671 231 394 59 32 chr6 11390300 11390520 -138126517 - MIRb SINE MIR -40 228 3 5 671 423 0 0 0 chr6 11390701 11390748 -138126289 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 671 275 0 29 0 chr6 11390992 11391027 -138126010 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 5 671 233 287 80 44 chr6 11391027 11391140 -138125897 + B3 SINE B2 98 214 -2 5 671 2939 136 131 24 chr6 11391144 11391694 -138125343 + Lx2B LINE L1 6391 6999 -1 5 671 2555 228 34 23 chr6 11392281 11392846 -138124191 + Lx5 LINE L1 6477 7047 -3 5 671 1324 327 49 21 chr6 11392870 11393500 -138123537 + Lx8 LINE L1 6188 6835 -638 5 671 484 350 93 47 chr6 11393504 11393690 -138123347 + Lx8 LINE L1 7039 7222 -251 5 671 2953 92 26 51 chr6 11393690 11394184 -138122853 - RLTR45 LTR ERVK 0 482 1 5 671 484 350 93 47 chr6 11394184 11394383 -138122654 + Lx8 LINE L1 7223 7442 -31 5 671 23 68 0 0 chr6 11394385 11394429 -138122608 + AT_rich Low_complexity Low_complexity 1 44 0 5 671 1815 155 43 17 chr6 11394447 11394796 -138122241 - RLTR15 LTR ERVK 0 359 2 5 671 268 245 19 67 chr6 11394835 11394940 -138122097 - RCHARR1 DNA MER1_type -214 760 661 5 671 530 118 0 11 chr6 11394961 11395055 -138121982 + (TG)n Simple_repeat Simple_repeat 2 94 0 5 671 3566 43 7 2 chr6 11395058 11395497 -138121540 - L1Md_F2 LINE L1 -8 6574 6134 5 671 32011 93 5 5 chr6 11395500 11400658 -138116379 - L1Md_F2 LINE L1 -301 5582 446 5 83 38366 9 0 1 chr6 11400887 11406909 -138110128 + L1Md_A LINE L1 1 5586 -297 5 672 8936 6 0 0 chr6 11406909 11407905 -138109132 + L1Md_A LINE L1 5587 6582 0 5 672 2279 225 78 30 chr6 11408062 11408602 -138108435 + RMER15 LTR ERVL 10 575 0 5 672 465 110 0 0 chr6 11408602 11408684 -138108353 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 672 215 173 19 0 chr6 11409275 11409327 -138107710 + CT-rich Low_complexity Low_complexity 2 54 0 5 672 203 240 0 0 chr6 11411319 11411369 -138105668 + GA-rich Low_complexity Low_complexity 2 51 0 5 672 681 13 0 0 chr6 11412466 11412544 -138104493 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 672 7049 107 17 26 chr6 11412616 11413741 -138103296 - Lx LINE L1 -1 6653 5540 5 672 2143 177 18 0 chr6 11413737 11414126 -138102911 + L1_Mur2 LINE L1 4924 5319 -558 5 672 32756 100 14 9 chr6 11414140 11418723 -138098314 + L1Md_F2 LINE L1 238 4826 -1057 5 672 5408 43 0 0 chr6 11418723 11419374 -138097663 - L1Md_T LINE L1 0 6582 5932 5 672 32756 81 5 4 chr6 11419374 11420940 -138096097 + L1Md_F2 LINE L1 4827 6401 -181 5 672 9400 84 3 11 chr6 11420932 11421355 -138095682 + L1_Mm LINE L1 4290 4714 -1169 5 672 4101 37 2 0 chr6 11421355 11421836 -138095201 + LTRIS_Mm LTR ERV1 1 482 0 5 672 9400 84 3 11 chr6 11421836 11422719 -138094318 + L1_Mm LINE L1 4715 5586 -297 5 672 1149 119 10 275 chr6 11422694 11422720 -138094317 + L1_Mm LINE L1 5286 5313 -570 5 672 7568 61 2 8 chr6 11422720 11423710 -138093327 + L1Md_F2 LINE L1 5588 6571 -11 5 672 1149 119 10 275 chr6 11423710 11424076 -138092961 + L1_Mm LINE L1 5314 5573 -310 5 672 2082 336 70 24 chr6 11424084 11425206 -138091831 + Lx8 LINE L1 6299 7472 -1 5 672 360 64 0 0 chr6 11426075 11426122 -138090915 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 672 487 139 60 17 chr6 11426714 11426831 -138090206 + L1_Mus3 LINE L1 6511 6632 -6 5 672 231 344 0 62 chr6 11427284 11427380 -138089657 - MLT2B3 LTR ERVL -464 90 1 5 672 274 302 137 15 chr6 11427787 11427918 -138089119 - BLACKJACK DNA AcHobo -1601 1343 1197 5 672 225 331 20 52 chr6 11428356 11428509 -138088528 + MER96B DNA hAT 1 148 -269 5 672 25 51 0 0 chr6 11429722 11429761 -138087276 + AT_rich Low_complexity Low_complexity 1 39 0 5 672 22 0 0 0 chr6 11430013 11430035 -138087002 + AT_rich Low_complexity Low_complexity 1 22 0 5 672 7321 77 18 1 chr6 11430183 11431490 -138085547 + L1_Mus2 LINE L1 5242 6565 -1 5 672 24 0 0 0 chr6 11431490 11431514 -138085523 + AT_rich Low_complexity Low_complexity 1 24 0 5 672 1031 277 64 92 chr6 11432259 11432674 -138084363 + MTD LTR MaLR 9 404 -15 5 672 1190 293 128 31 chr6 11432919 11433176 -138083861 - Lx9 LINE L1 -3 7641 7341 5 672 1089 63 0 0 chr6 11433176 11433318 -138083719 + (TC)n Simple_repeat Simple_repeat 2 143 0 5 672 1190 293 128 31 chr6 11433318 11433645 -138083392 - Lx9 LINE L1 -304 7340 7001 5 672 1242 318 32 34 chr6 11433859 11434364 -138082673 + Lx9 LINE L1 6690 7193 -451 5 672 439 256 64 94 chr6 11434342 11434639 -138082398 + Lx9 LINE L1 7353 7640 -4 5 672 826 297 21 99 chr6 11434817 11435024 -138082013 - ORR1E LTR MaLR -4 355 170 5 672 1977 139 28 6 chr6 11435024 11435343 -138081694 - ORR1A3 LTR MaLR 0 326 1 5 672 826 297 21 99 chr6 11435343 11435520 -138081517 - ORR1E LTR MaLR -190 169 1 5 672 4360 225 111 10 chr6 11436942 11438034 -138079003 - Lx9 LINE L1 -19 7625 6424 5 672 1203 167 74 12 chr6 11438102 11438205 -138078832 - L1_Rod LINE L1 -26 5821 5715 5 672 969 41 0 0 chr6 11438205 11438327 -138078710 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 5 672 1203 167 74 12 chr6 11438327 11438465 -138078572 - L1_Rod LINE L1 -133 5714 5565 5 672 528 266 7 7 chr6 11441599 11441743 -138075294 - B1_Mur1 SINE Alu -5 144 1 5 672 486 0 0 0 chr6 11441967 11442021 -138075016 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 5 672 294 29 0 0 chr6 11442021 11442055 -138074982 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 5 672 243 152 0 0 chr6 11442076 11442122 -138074915 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 672 621 237 134 18 chr6 11442217 11442501 -138074536 - L1MA9 LINE L1 -213 6099 5783 5 672 208 250 35 12 chr6 11442503 11442588 -138074449 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 672 250 235 12 36 chr6 11442590 11442674 -138074363 - L1MA9 LINE L1 -418 5771 5690 5 672 246 128 0 0 chr6 11442674 11442713 -138074324 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 672 964 298 56 8 chr6 11442770 11443037 -138074000 - MTEa LTR MaLR -94 285 6 5 672 246 347 105 33 chr6 11444744 11444896 -138072141 + MLT2F LTR ERVL 438 600 -63 5 672 1136 173 123 9 chr6 11444896 11445123 -138071914 - MTC LTR MaLR -168 253 1 5 672 5337 189 88 14 chr6 11445123 11446290 -138070747 - MTC-int LTR MaLR 0 1258 5 5 672 6230 99 12 1 chr6 11446547 11447432 -138069605 - L1_Mus2 LINE L1 -2 6564 5670 5 672 3496 105 8 0 chr6 11447431 11447928 -138069109 + L1_Mus2 LINE L1 5182 5682 -201 5 672 1178 34 0 40 chr6 11447947 11448099 -138068938 - B1_Mus2 SINE Alu 0 147 2 5 672 238 320 40 30 chr6 11448503 11448603 -138068434 + MLT1H LTR MaLR 64 164 -385 5 672 464 72 0 14 chr6 11448626 11448696 -138068341 + (TAAA)n Simple_repeat Simple_repeat 2 70 0 5 672 423 296 87 46 chr6 11449350 11449386 -138067651 + L1M3 LINE L1 4833 4863 -1277 5 672 204 67 0 0 chr6 11449386 11449416 -138067621 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 672 423 296 87 46 chr6 11449416 11449692 -138067345 + L1M3 LINE L1 4864 5162 -978 5 672 315 0 0 0 chr6 11449692 11449727 -138067310 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 672 423 296 87 46 chr6 11449727 11449760 -138067277 + L1M3 LINE L1 5163 5193 -947 5 672 493 284 70 32 chr6 11449762 11450136 -138066901 + L1M3 LINE L1 5384 5771 -520 5 672 249 33 0 0 chr6 11450243 11450273 -138066764 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 5 672 262 204 0 0 chr6 11450728 11450777 -138066260 + Lx6 LINE L1 5652 5700 -1996 5 672 4342 256 66 9 chr6 11450767 11451929 -138065108 + Lx6 LINE L1 6054 7546 -150 5 672 832 236 78 36 chr6 11451963 11452230 -138064807 + ORR1D2 LTR MaLR 4 317 -53 5 672 756 33 0 0 chr6 11453274 11453365 -138063672 + (TC)n Simple_repeat Simple_repeat 2 92 0 5 672 1474 308 49 39 chr6 11453396 11453991 -138063046 - Lx7 LINE L1 -328 7368 6768 5 672 29362 122 14 30 chr6 11453999 11460393 -138056644 + L1_Mus1 LINE L1 316 6567 0 5 672 725 236 81 47 chr6 11460399 11460635 -138056402 - Lx7 LINE L1 -918 6778 6535 5 672 223 378 12 24 chr6 11460779 11460863 -138056174 - MER5B DNA MER1_type -95 83 1 5 672 383 311 19 19 chr6 11461179 11461284 -138055753 + MER91A DNA Tip100 75 179 -17 5 672 693 160 64 6 chr6 11462941 11463098 -138053939 + Lx2A1 LINE L1 6832 6997 -11 5 672 1131 58 0 0 chr6 11463199 11463337 -138053700 + B1_Mm SINE Alu 3 140 -7 5 672 258 32 0 0 chr6 11463338 11463369 -138053668 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 672 387 259 12 0 chr6 11464181 11464262 -138052775 - RSINE1 SINE B4 -81 84 3 5 672 3596 139 50 0 chr6 11464427 11465011 -138052026 + L1Md_F LINE L1 518 1130 -5489 5 672 31488 79 5 2 chr6 11464988 11469392 -138047645 + L1Md_F LINE L1 1077 5589 -297 5 672 7200 78 8 13 chr6 11469392 11470381 -138046656 + L1Md_F2 LINE L1 5587 6570 -12 5 672 203 0 0 36 chr6 11470405 11470433 -138046604 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 672 3244 126 57 2 chr6 11470661 11471186 -138045851 + Lx2 LINE L1 6444 6997 0 5 672 267 243 113 70 chr6 11471372 11471487 -138045550 + PB1D9 SINE Alu 1 120 0 5 672 1298 321 52 34 chr6 11471751 11472289 -138044748 - Lx8 LINE L1 -699 6774 6227 5 672 6702 130 62 25 chr6 11472563 11474555 -138042482 + L1_Mus1 LINE L1 1203 2246 -1668 5 672 6247 173 5 3 chr6 11474554 11476016 -138041021 + Lx LINE L1 5195 6654 0 5 672 25 31 0 0 chr6 11476445 11476477 -138040560 + AT_rich Low_complexity Low_complexity 1 32 0 5 672 677 285 86 103 chr6 11477790 11477919 -138039118 + B4A SINE B4 8 124 -168 5 672 342 0 0 0 chr6 11477919 11477957 -138039080 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 672 677 285 86 103 chr6 11477957 11478117 -138038920 + B4A SINE B4 125 292 0 5 672 219 125 0 0 chr6 11478178 11478218 -138038819 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 672 198 0 0 0 chr6 11478268 11478290 -138038747 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 5 672 24 53 0 0 chr6 11480417 11480455 -138036582 + AT_rich Low_complexity Low_complexity 1 38 0 5 672 41 0 0 0 chr6 11480499 11480540 -138036497 + AT_rich Low_complexity Low_complexity 1 41 0 5 672 2668 290 75 29 chr6 11480546 11481572 -138035465 - Lx9 LINE L1 -75 7569 6497 5 672 219 151 37 19 chr6 11481712 11481766 -138035271 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 5 672 2429 225 34 15 chr6 11481795 11482391 -138034646 + L1_Mur3 LINE L1 3953 4559 -1321 5 672 672 262 24 12 chr6 11482571 11482737 -138034300 + RMER15 LTR ERVL 312 479 -96 5 672 390 272 0 0 chr6 11483973 11484071 -138032966 - MIRb SINE MIR -8 260 159 6 672 432 37 0 0 chr6 11484921 11484975 -138032062 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 672 21 0 0 0 chr6 11486274 11486295 -138030742 + AT_rich Low_complexity Low_complexity 1 21 0 6 672 814 301 83 52 chr6 11486817 11487180 -138029857 + RLTR26 LTR ERVK 25 419 -223 6 672 358 336 23 8 chr6 11487331 11487463 -138029574 + B1F1 SINE Alu 16 149 0 6 672 1024 68 11 38 chr6 11487528 11487711 -138029326 + (GGGAA)n Simple_repeat Simple_repeat 1 178 0 6 672 783 99 11 50 chr6 11487711 11487891 -138029146 + GA-rich Low_complexity Low_complexity 1 173 0 6 672 1051 72 0 48 chr6 11487895 11488084 -138028953 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 6 672 347 157 14 0 chr6 11488100 11488170 -138028867 + GA-rich Low_complexity Low_complexity 1 71 0 6 672 599 236 0 39 chr6 11488176 11488304 -138028733 + B4 SINE B4 12 134 -158 6 672 2374 174 85 9 chr6 11488296 11488743 -138028294 + RMER19C LTR ERVK 131 611 0 6 672 606 323 5 41 chr6 11489929 11490126 -138026911 + B3A SINE B2 1 190 -8 6 672 2490 247 71 39 chr6 11490259 11490975 -138026062 + Lx6 LINE L1 6654 7392 -68 6 672 293 111 0 36 chr6 11491369 11491425 -138025612 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 6 672 4524 6 0 0 chr6 11492118 11492619 -138024418 + L1Md_T LINE L1 6082 6582 0 6 672 3890 54 89 15 chr6 11492719 11493244 -138023793 + LTRIS2 LTR ERV1 1 564 0 6 672 1681 189 77 120 chr6 11493405 11493940 -138023097 + RLTR1B LTR ERV1 1 512 0 6 672 33 25 0 0 chr6 11494874 11494914 -138022123 + AT_rich Low_complexity Low_complexity 1 40 0 6 672 3267 93 30 18 chr6 11495558 11496050 -138020987 - Lx LINE L1 -3 6651 6154 6 672 238 242 208 10 chr6 11496070 11496262 -138020775 - L1M2 LINE L1 -1656 4487 4258 6 672 1187 218 28 45 chr6 11496273 11496629 -138020408 + RLTR15 LTR ERVK 1 350 -9 6 672 357 308 41 7 chr6 11496632 11496779 -138020258 - L1M2 LINE L1 -1891 4252 4101 6 672 399 100 0 0 chr6 11496830 11496900 -138020137 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 672 590 133 10 10 chr6 11496919 11497018 -138020019 + BGLII_Mus LTR ERVK 1 99 -323 6 672 323 316 81 35 chr6 11497254 11497451 -138019586 - L2b LINE L2 0 3426 3220 6 672 820 189 0 26 chr6 11497985 11498137 -138018900 + B1_Mur2 SINE Alu 1 148 -1 6 672 1048 102 0 0 chr6 11498408 11498555 -138018482 + B1_Mus1 SINE Alu 1 147 -1 6 672 597 271 93 5 chr6 11498618 11498811 -138018226 + B3 SINE B2 1 210 -6 6 672 701 321 144 26 chr6 11499043 11499450 -138017587 - Lx8 LINE L1 -165 7308 6888 6 672 1633 191 122 8 chr6 11499450 11499804 -138017233 + ORR1B1 LTR MaLR 1 394 0 6 672 701 321 144 26 chr6 11499804 11499930 -138017107 - Lx8 LINE L1 -586 6887 6714 6 672 204 67 0 0 chr6 11499943 11499973 -138017064 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 6 672 2242 166 36 30 chr6 11500036 11500662 -138016375 - RMER21B LTR ERV1 0 947 418 1 672 1228 284 69 12 chr6 11500669 11501076 -138015961 - Lx8 LINE L1 -810 6663 6234 2 672 825 170 7 0 chr6 11501268 11501421 -138015616 - Lx LINE L1 -1 6653 6500 3 672 2568 84 8 3 chr6 11501421 11501791 -138015246 + Lx2 LINE L1 6158 6529 -468 4 672 348 351 41 20 chr6 11501951 11502146 -138014891 - L1MB5 LINE L1 -266 5908 5710 5 672 377 246 8 17 chr6 11502155 11502275 -138014762 + L1_Mur3 LINE L1 5325 5443 -437 6 672 4629 205 77 9 chr6 11502278 11502455 -138014582 + Lx7 LINE L1 4611 4827 -1053 7 672 504 0 0 0 chr6 11502455 11502511 -138014526 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 8 672 4629 206 72 11 chr6 11502511 11503627 -138013410 + Lx7 LINE L1 4828 5984 -1712 7 672 369 229 53 54 chr6 11503711 11503835 -138013202 + RMER12 LTR ERVK 1101 1205 -117 9 672 2091 238 30 7 chr6 11503942 11504485 -138012552 + Lx7 LINE L1 6750 7304 -392 7 672 216 0 0 0 chr6 11504497 11504521 -138012516 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 672 4001 136 70 20 chr6 11504963 11505653 -138011384 + Lx2 LINE L1 6268 6991 -6 1 672 873 302 103 26 chr6 11506987 11507674 -138009363 - L1_Mur3 LINE L1 -30 5817 5101 1 672 770 318 62 56 chr6 11507780 11508653 -138008384 - L1_Mur3 LINE L1 -2872 2975 2098 1 672 3727 77 0 0 chr6 11509030 11509553 -138007484 - L1_Mm LINE L1 -1101 4782 4260 1 672 5509 75 14 4 chr6 11509553 11510284 -138006753 + L1Md_F2 LINE L1 5845 6582 0 1 672 391 280 79 165 chr6 11510467 11510783 -138006254 - B4A SINE B4 0 292 4 1 672 258 32 0 0 chr6 11511065 11511096 -138005941 + (T)n Simple_repeat Simple_repeat 1 31 0 1 672 524 236 217 7 chr6 11511422 11511712 -138005325 + Charlie2b DNA MER1_type 2151 2501 -281 1 672 376 229 279 6 chr6 11513064 11513237 -138003800 + MIR SINE MIR 9 221 -41 1 672 583 300 70 22 chr6 11514086 11514359 -138002678 + Lx8 LINE L1 7185 7470 -3 1 672 232 250 18 18 chr6 11515598 11515655 -138001382 - B4A SINE B4 -14 278 222 2 672 555 65 21 11 chr6 11515659 11515753 -138001284 + (TC)n Simple_repeat Simple_repeat 1 95 0 2 672 316 325 103 81 chr6 11515824 11515998 -138001039 - B4A SINE B4 -109 183 6 2 672 288 0 0 0 chr6 11516123 11516155 -138000882 + (A)n Simple_repeat Simple_repeat 1 32 0 2 672 1474 247 16 8 chr6 11516166 11516550 -138000487 - Lx7 LINE L1 -438 7258 6872 2 672 678 229 127 91 chr6 11516544 11516938 -138000099 + Lx7 LINE L1 7283 7690 -6 2 672 219 114 0 0 chr6 11516986 11517021 -138000016 + (ATG)n Simple_repeat Simple_repeat 3 37 0 2 672 282 330 9 18 chr6 11517097 11517211 -137999826 - MER104 DNA Tc2 -33 148 36 2 672 564 56 0 0 chr6 11517267 11517339 -137999698 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 2 672 235 191 29 29 chr6 11517783 11517853 -137999184 + T-rich Low_complexity Low_complexity 1 70 0 2 672 29 28 0 0 chr6 11517954 11517990 -137999047 + AT_rich Low_complexity Low_complexity 1 36 0 2 672 334 337 10 20 chr6 11518010 11518110 -137998927 + RSINE1 SINE B4 30 128 -37 2 672 498 17 0 0 chr6 11518113 11518172 -137998865 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 672 315 0 0 0 chr6 11518192 11518227 -137998810 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 672 23 33 0 0 chr6 11518228 11518258 -137998779 + AT_rich Low_complexity Low_complexity 1 30 0 3 672 21 0 0 0 chr6 11519515 11519536 -137997501 + AT_rich Low_complexity Low_complexity 1 21 0 3 672 3538 52 43 0 chr6 11519592 11520034 -137997003 - L1_Mus1 LINE L1 -12 6555 6095 3 672 1800 34 130 30 chr6 11520104 11520288 -137996749 + L1Md_F3 LINE L1 6276 6488 -96 3 672 3342 33 2 15 chr6 11520288 11520689 -137996348 - MTA_Mm LTR MaLR 0 396 1 3 672 1800 34 130 30 chr6 11520689 11520774 -137996263 + L1Md_F3 LINE L1 6489 6572 -12 3 672 645 284 103 103 chr6 11520791 11521274 -137995763 + Lx7 LINE L1 6935 7417 -279 3 672 1644 153 30 72 chr6 11521302 11521634 -137995403 + ORR1A3 LTR MaLR 1 318 -8 3 672 2322 103 91 21 chr6 11521829 11522214 -137994823 - Lx LINE L1 0 6654 6243 3 672 228 306 55 14 chr6 11522845 11522918 -137994119 + RSINE1 SINE B4 5 80 -85 4 672 228 289 105 0 chr6 11523422 11523498 -137993539 - B4 SINE B4 0 292 209 4 672 2619 72 0 0 chr6 11523498 11523845 -137993192 - L1_Mus1 LINE L1 -131 6436 6090 4 672 1149 65 6 40 chr6 11523845 11524057 -137992980 + L1Md_F2 LINE L1 6413 6582 0 4 672 513 325 57 6 chr6 11524075 11524233 -137992804 - B4 SINE B4 -121 171 6 4 672 2923 105 13 53 chr6 11524513 11524985 -137992052 + Lx3B LINE L1 6518 6970 -3 4 672 258 32 0 0 chr6 11524992 11525023 -137992014 + (TAA)n Simple_repeat Simple_repeat 3 33 0 4 672 199 361 61 66 chr6 11525568 11525749 -137991288 + MIRb SINE MIR 47 226 -42 4 672 545 325 107 27 chr6 11526697 11526959 -137990078 - LTR16A1 LTR ERVL 0 456 174 4 672 4023 72 2 0 chr6 11528014 11528526 -137988511 - L1_Mus2 LINE L1 -1 6565 6053 4 672 219 69 0 0 chr6 11529494 11529523 -137987514 + (TTCTG)n Simple_repeat Simple_repeat 4 32 0 4 672 566 99 11 0 chr6 11529777 11529868 -137987169 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 5 672 440 257 59 0 chr6 11530295 11530396 -137986641 - B1_Mur2 SINE Alu -5 144 38 5 672 365 255 71 10 chr6 11530408 11530507 -137986530 - U6 snRNA snRNA -2 105 1 5 672 239 325 43 6 chr6 11530516 11530677 -137986360 - L1MA4 LINE L1 -3 6297 6131 5 672 614 266 128 57 chr6 11530708 11530899 -137986138 - L1MA4 LINE L1 -226 6074 5887 5 672 273 57 0 0 chr6 11530899 11530934 -137986103 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 672 1098 91 0 0 chr6 11530934 11531077 -137985960 - B1_Mus1 SINE Alu -3 145 3 5 672 614 266 128 57 chr6 11531077 11531390 -137985647 - L1MA4 LINE L1 -414 5886 5534 5 672 612 0 0 0 chr6 11531423 11531491 -137985546 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 5 672 3502 99 16 4 chr6 11532161 11532667 -137984370 - L1_Mus4 LINE L1 -5 6631 6120 5 672 693 125 0 8 chr6 11532667 11532788 -137984249 + L1_Mus4 LINE L1 6000 6119 -517 5 672 216 308 31 0 chr6 11532958 11533023 -137984014 - MIRc SINE MIR -58 210 144 5 673 228 135 0 0 chr6 11534401 11534438 -137982599 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 673 459 0 0 0 chr6 11534449 11534500 -137982537 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 673 249 128 0 0 chr6 11534607 11534654 -137982383 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 673 326 293 0 26 chr6 11534660 11534811 -137982226 + (CAGA)n Simple_repeat Simple_repeat 4 150 0 6 673 320 152 0 15 chr6 11534818 11534885 -137982152 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 673 210 240 0 20 chr6 11535576 11535627 -137981410 - MIRc SINE MIR -17 251 202 6 673 423 289 62 14 chr6 11536588 11536732 -137980305 - MTEa LTR MaLR -228 151 1 6 673 1131 207 15 184 chr6 11536736 11537215 -137979822 - RMER10B LTR ERVL 0 398 1 6 673 833 144 13 13 chr6 11537708 11537863 -137979174 - Lx2A LINE L1 -1 7007 6853 6 673 459 335 43 27 chr6 11538598 11538782 -137978255 + MER5A DNA MER1_type 1 187 -2 6 673 275 350 94 65 chr6 11538863 11539202 -137977835 + L2 LINE L2 2345 2693 -726 6 673 633 61 0 0 chr6 11539903 11539985 -137977052 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 7 673 549 258 161 12 chr6 11540650 11540893 -137976144 + MER5C DNA MER1_type 5 283 -30 7 673 711 299 88 36 chr6 11540903 11541379 -137975658 + L1MC1 LINE L1 5669 6169 -164 7 673 300 226 64 36 chr6 11541391 11541501 -137975536 + L1MC1 LINE L1 6205 6317 -16 7 673 492 27 0 39 chr6 11541715 11541792 -137975245 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 7 673 1059 95 0 0 chr6 11541792 11541929 -137975108 - B1_Mus1 SINE Alu -10 138 2 7 673 482 231 67 8 chr6 11542436 11542604 -137974433 + L1MA5 LINE L1 5848 6026 -265 7 673 882 104 38 177 chr6 11542666 11542716 -137974321 + B2_Mm2 SINE B2 2 50 -145 7 673 1310 55 5 95 chr6 11542716 11542916 -137974121 + L1_Mus2 LINE L1 6385 6566 0 7 673 882 104 38 177 chr6 11542916 11543051 -137973986 + B2_Mm2 SINE B2 51 161 -34 7 673 378 0 0 0 chr6 11543051 11543093 -137973944 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 7 673 225 310 54 8 chr6 11543100 11543230 -137973807 + L1MA5 LINE L1 6134 6269 -31 7 673 26 0 0 0 chr6 11545247 11545273 -137971764 + AT_rich Low_complexity Low_complexity 1 26 0 7 673 211 250 35 18 chr6 11545557 11545614 -137971423 + ID_B1 SINE B4 100 157 -67 8 673 525 16 0 0 chr6 11545832 11545894 -137971143 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 8 673 864 302 15 15 chr6 11546125 11546394 -137970643 + B4 SINE B4 3 271 -21 8 673 3202 53 2 5 chr6 11546552 11546948 -137970089 - MTA_Mm LTR MaLR 0 396 2 8 673 183 350 0 0 chr6 11546957 11547017 -137970020 - MIRb SINE MIR -21 247 188 8 673 239 154 0 0 chr6 11547845 11547884 -137969153 - ORR1D1 LTR MaLR -161 213 175 8 673 584 27 14 0 chr6 11547986 11548060 -137968977 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 8 673 887 179 0 6 chr6 11549153 11549333 -137967704 + GA-rich Low_complexity Low_complexity 2 180 0 8 673 489 248 66 40 chr6 11549466 11549617 -137967420 + B4 SINE B4 7 161 -131 8 673 27 29 0 0 chr6 11550342 11550376 -137966661 + AT_rich Low_complexity Low_complexity 1 34 0 8 673 5065 129 47 25 chr6 11550579 11551455 -137965582 - RMER17A2 LTR ERVK -11 895 1 9 673 360 271 45 65 chr6 11551528 11551682 -137965355 + MLT1E1A LTR MaLR 9 159 -521 9 673 1638 296 48 62 chr6 11551738 11551813 -137965224 + Lx8 LINE L1 6092 6167 -1306 9 673 2701 57 40 16 chr6 11551813 11552191 -137964846 + L1_Mus3 LINE L1 6249 6635 -3 9 673 1638 296 48 62 chr6 11552191 11552828 -137964209 + Lx8 LINE L1 6168 6794 -679 9 673 477 0 0 0 chr6 11553058 11553111 -137963926 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 673 374 143 11 0 chr6 11554761 11554852 -137962185 + (TG)n Simple_repeat Simple_repeat 2 93 0 9 673 366 191 15 30 chr6 11555173 11555419 -137961618 + CT-rich Low_complexity Low_complexity 1 242 0 9 673 297 0 0 0 chr6 11556659 11556692 -137960345 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 673 22 0 0 0 chr6 11557597 11557619 -137959418 + AT_rich Low_complexity Low_complexity 1 22 0 9 673 2097 142 81 13 chr6 11558444 11558816 -137958221 + Lx LINE L1 6244 6640 -14 9 673 932 105 0 7 chr6 11558824 11558968 -137958069 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 1 673 277 300 91 21 chr6 11559050 11559193 -137957844 - MLT1A LTR MaLR 0 365 213 1 673 296 278 72 53 chr6 11559219 11559371 -137957666 - MLT1A LTR MaLR -212 162 8 1 673 24 0 0 0 chr6 11560007 11560031 -137957006 + AT_rich Low_complexity Low_complexity 1 24 0 1 673 288 0 0 0 chr6 11560800 11560832 -137956205 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 673 620 48 12 0 chr6 11561352 11561436 -137955601 + (TC)n Simple_repeat Simple_repeat 1 85 0 1 673 638 292 102 10 chr6 11561890 11562087 -137954950 + B3 SINE B2 2 216 0 1 673 247 360 8 34 chr6 11562639 11562757 -137954280 - MER104 DNA Tc2 -20 161 47 1 673 387 0 0 0 chr6 11563857 11563900 -137953137 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 673 262 290 9 45 chr6 11564200 11564312 -137952725 - Lx8 LINE L1 -7 7466 7359 1 673 1685 310 106 24 chr6 11564296 11564315 -137952722 + Lx8 LINE L1 6466 6488 -985 1 673 506 29 15 0 chr6 11564315 11564383 -137952654 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 1 673 1685 310 106 24 chr6 11564383 11565172 -137951865 + Lx8 LINE L1 6489 7341 -132 1 673 21 0 0 0 chr6 11565228 11565249 -137951788 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 420 173 30 8 chr6 11565578 11565712 -137951325 + GA-rich Low_complexity Low_complexity 4 140 0 1 673 322 312 119 31 chr6 11565850 11566009 -137951028 - MIRb SINE MIR 0 268 96 1 673 2509 164 34 52 chr6 11567416 11567950 -137949087 + RLTR28 LTR ERVL 1 524 0 1 673 306 0 0 0 chr6 11567968 11568002 -137949035 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 673 297 0 0 0 chr6 11568004 11568037 -137949000 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 1 673 272 262 16 0 chr6 11568040 11568101 -137948936 + ID2 SINE ID 3 64 -19 1 673 2437 88 34 0 chr6 11568101 11568454 -137948583 + L1_Mus3 LINE L1 6274 6638 0 1 673 383 269 0 72 chr6 11568985 11569090 -137947947 - B1_Mur1 SINE Alu 0 149 27 1 673 207 0 0 0 chr6 11569131 11569154 -137947883 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 673 341 300 50 0 chr6 11569194 11569274 -137947763 + ID_B1 SINE B4 123 206 -18 1 673 288 365 127 39 chr6 11569561 11569766 -137947271 - MLT1B-int LTR MaLR -32 1355 1133 1 673 787 281 90 38 chr6 11570439 11570728 -137946309 - RMER5 LTR ERV1 -197 337 34 1 673 459 287 152 25 chr6 11570778 11570979 -137946058 - MLT1B LTR MaLR -17 373 162 1 673 339 266 0 0 chr6 11570991 11571115 -137945922 + GA-rich Low_complexity Low_complexity 2 125 0 1 673 358 282 89 71 chr6 11571116 11571284 -137945753 - MLT1B LTR MaLR -219 171 1 1 673 589 346 33 4 chr6 11571496 11571737 -137945300 - MLT1B-int LTR MaLR -1044 343 96 1 673 246 256 84 12 chr6 11571799 11571882 -137945155 - MLT1B LTR MaLR -6 506 418 1 673 3221 93 89 11 chr6 11573968 11574857 -137942180 - L1_Mur1 LINE L1 -4240 1646 493 1 673 1223 123 42 9 chr6 11574866 11575079 -137941958 + RLTR13B4 LTR ERVK 1 220 -583 1 673 7912 22 1 0 chr6 11575080 11576536 -137940501 - L1Md_T LINE L1 -69 6513 5057 1 673 5688 73 19 20 chr6 11576536 11577360 -137939677 + RLTR13B3 LTR ERVK 104 929 0 1 673 382 200 0 192 chr6 11577364 11577408 -137939629 - L1_Mur1 LINE L1 -6667 315 278 1 673 1171 62 0 0 chr6 11577408 11577554 -137939483 + B1_Mus1 SINE Alu 2 147 -1 1 673 382 200 0 192 chr6 11577554 11577639 -137939398 - L1_Mur1 LINE L1 -6705 277 211 1 673 252 291 24 137 chr6 11578092 11578303 -137938734 + L2a LINE L2 3153 3339 -87 1 673 493 328 22 0 chr6 11578846 11579029 -137938008 - MER3 DNA MER1_type -21 188 2 1 673 471 324 91 27 chr6 11579111 11579330 -137937707 - MLT2B1 LTR ERVL -3 564 332 1 673 290 319 90 7 chr6 11580321 11580466 -137936571 - MIRb SINE MIR -10 258 102 1 673 219 36 0 0 chr6 11581679 11581707 -137935330 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 673 2232 323 41 32 chr6 11582561 11583565 -137933472 + Lx9 LINE L1 6319 7331 -313 1 673 254 98 0 19 chr6 11583570 11583622 -137933415 + (TTTTG)n Simple_repeat Simple_repeat 4 54 0 1 673 583 38 25 0 chr6 11583632 11583711 -137933326 - B1_Mur4 SINE Alu 0 150 70 1 673 6303 140 20 30 chr6 11583711 11584886 -137932151 + L1_Mur2 LINE L1 4108 5270 -607 1 673 33993 60 13 4 chr6 11584887 11589829 -137927208 + L1Md_F2 LINE L1 512 5584 -299 1 673 8052 40 6 2 chr6 11589831 11590811 -137926226 + L1Md_F2 LINE L1 5587 6570 -12 1 673 2023 164 118 7 chr6 11590811 11591217 -137925820 + Lx4B LINE L1 5254 5704 -173 1 673 1477 130 21 16 chr6 11591217 11591460 -137925577 + Lx4B LINE L1 5820 6063 -995 1 673 4926 35 38 0 chr6 11591462 11592071 -137924966 - L1Md_F3 LINE L1 -2 6582 5951 1 673 4220 184 105 38 chr6 11592071 11593015 -137924022 + Lx4B LINE L1 5656 6662 -396 1 673 207 0 0 0 chr6 11593042 11593065 -137923972 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 673 440 165 0 11 chr6 11593525 11593617 -137923420 + CT-rich Low_complexity Low_complexity 1 91 0 1 673 21 82 0 0 chr6 11594013 11594062 -137922975 + AT_rich Low_complexity Low_complexity 1 49 0 1 673 450 0 0 0 chr6 11594250 11594300 -137922737 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 673 909 140 0 0 chr6 11594320 11594456 -137922581 - B1_Mur3 SINE Alu -13 136 1 1 673 593 247 45 8 chr6 11595313 11595341 -137921696 - L1M3 LINE L1 -681 5508 5479 1 673 468 0 0 0 chr6 11595341 11595393 -137921644 + (TAA)n Simple_repeat Simple_repeat 1 52 0 1 673 4838 102 17 0 chr6 11595393 11596091 -137920946 - L1_Mus2 LINE L1 -440 5443 4734 1 673 7603 62 14 3 chr6 11596091 11597180 -137919857 + L1_Mus2 LINE L1 5465 6565 -1 1 673 24 0 0 0 chr6 11597183 11597207 -137919830 + AT_rich Low_complexity Low_complexity 1 24 0 1 673 403 48 0 31 chr6 11597634 11597698 -137919339 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 673 921 249 92 92 chr6 11597840 11598230 -137918807 - MLT1B LTR MaLR 0 390 1 1 673 21 0 0 0 chr6 11598496 11598517 -137918520 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 776 234 51 5 chr6 11598534 11598749 -137918288 - MER2 DNA MER2_type -24 321 97 1 673 614 167 173 0 chr6 11598769 11598919 -137918118 + RMER1B Other Other 888 1063 -3 1 673 408 208 0 0 chr6 11598932 11599028 -137918009 + GA-rich Low_complexity Low_complexity 4 99 0 1 673 4087 186 31 16 chr6 11599225 11600026 -137917011 + Lx4B LINE L1 6241 7053 -5 1 673 244 70 23 23 chr6 11600027 11600071 -137916966 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 673 221 154 0 0 chr6 11601046 11601085 -137915952 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 673 636 294 65 17 chr6 11601214 11601505 -137915532 + MamRep605 Unknown Unknown 464 768 -108 1 673 613 297 118 68 chr6 11602480 11602895 -137914142 - LTR40a LTR ERVL 0 519 84 1 673 298 232 170 66 chr6 11602922 11602963 -137914074 + PB1D9 SINE Alu 3 61 -59 1 673 645 14 0 0 chr6 11602963 11603037 -137914000 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 673 298 232 170 66 chr6 11603037 11603101 -137913936 + PB1D9 SINE Alu 62 119 -1 1 673 1947 115 13 7 chr6 11603947 11604254 -137912783 - L1_Mus3 LINE L1 -3 6635 6327 1 673 9963 110 11 0 chr6 11604254 11605236 -137911801 - L1_Mm LINE L1 -2893 2990 2005 1 673 252 0 0 0 chr6 11605236 11605264 -137911773 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 673 9963 110 11 0 chr6 11605264 11605804 -137911233 - L1_Mm LINE L1 -3879 2004 1452 1 673 241 114 159 0 chr6 11605801 11605845 -137911192 - Lx4A LINE L1 -891 6167 6117 1 673 435 38 0 0 chr6 11605851 11605904 -137911133 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 673 189 0 0 0 chr6 11605987 11606008 -137911029 + (T)n Simple_repeat Simple_repeat 1 21 0 1 673 24928 18 0 0 chr6 11606022 11609647 -137907390 - L1Md_T LINE L1 0 6582 2959 1 673 2209 98 12 6 chr6 11610085 11610412 -137906625 - Lx LINE L1 -5 6649 6321 1 673 270 0 0 0 chr6 11611511 11611541 -137905496 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 673 421 286 28 19 chr6 11613055 11613124 -137903913 + ID SINE ID 12 81 -143 1 673 216 349 79 0 chr6 11613124 11613187 -137903850 + PB1D9 SINE Alu 1 68 -52 1 673 1761 169 11 103 chr6 11613279 11613715 -137903322 - Lx2B LINE L1 -845 5032 4637 1 673 6313 184 26 8 chr6 11613715 11615582 -137901455 + Lx2B LINE L1 5072 6973 -27 1 673 234 0 0 0 chr6 11615587 11615613 -137901424 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1 673 2866 142 13 0 chr6 11615617 11616088 -137900949 - Lx3_Mus LINE L1 -26 6983 6507 1 673 3044 90 5 0 chr6 11616090 11616523 -137900514 + Lx3_Mus LINE L1 5451 5885 -1 1 673 2246 109 148 8 chr6 11616559 11616938 -137900099 - RLTR44E LTR ERVK -20 432 1 1 673 3263 143 11 35 chr6 11616938 11617595 -137899442 + Lx3_Mus LINE L1 5887 6527 -482 1 673 6217 123 113 14 chr6 11617605 11618955 -137898082 + Lx3A LINE L1 5492 6975 -6 1 673 701 305 55 18 chr6 11619464 11619681 -137897356 + B4A SINE B4 59 283 -9 1 673 237 33 0 0 chr6 11619681 11619711 -137897326 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 673 687 134 0 0 chr6 11619711 11619853 -137897184 + (GA)n Simple_repeat Simple_repeat 1 142 0 1 673 610 228 6 12 chr6 11620130 11620294 -137896743 - Lx4B LINE L1 -316 6742 6580 1 673 868 310 97 26 chr6 11620764 11621105 -137895932 - MTEa LTR MaLR 0 379 15 1 673 231 88 0 0 chr6 11622310 11622344 -137894693 + (CTATA)n Simple_repeat Simple_repeat 2 35 0 1 673 2016 271 151 2 chr6 11622853 11623497 -137893540 - Lx6 LINE L1 -26 7434 6695 1 673 1295 105 5 0 chr6 11623641 11623831 -137893206 + Lx2 LINE L1 6453 6643 -354 1 673 1374 137 18 5 chr6 11623831 11624051 -137892986 + Lx2 LINE L1 6775 6997 0 1 673 1828 121 29 0 chr6 11624077 11624358 -137892679 + Lx LINE L1 6363 6651 -3 1 673 3280 145 37 19 chr6 11624699 11625197 -137891840 - Lx LINE L1 -367 6287 5778 1 673 243 0 0 0 chr6 11625197 11625224 -137891813 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 673 3280 145 37 19 chr6 11625224 11625315 -137891722 - Lx LINE L1 -877 5777 5687 1 673 1664 192 66 8 chr6 11625316 11625679 -137891358 + Lx LINE L1 6271 6654 0 1 673 554 327 24 12 chr6 11626027 11626197 -137890840 + B3A SINE B2 5 176 -22 1 673 973 101 8 0 chr6 11626530 11626659 -137890378 + B1_Mus1 SINE Alu 5 134 -14 1 673 1084 90 0 0 chr6 11626905 11627049 -137889988 - B1_Mus1 SINE Alu -4 144 1 1 673 1118 104 6 0 chr6 11627051 11627214 -137889823 - B2_Mm1t SINE B2 -29 164 1 1 673 4596 100 18 30 chr6 11627263 11628006 -137889031 - RMER17A LTR ERVK -17 734 1 1 673 392 266 35 6 chr6 11628041 11628211 -137888826 - L1MA6 LINE L1 -1 6299 6125 2 673 1551 204 81 29 chr6 11628419 11628516 -137888521 - ORR1B2 LTR MaLR 0 367 276 2 673 4748 122 132 66 chr6 11628516 11629475 -137887562 + RLTR13D2 LTR ERVK 1 1023 0 2 673 1551 204 81 29 chr6 11629475 11629721 -137887316 - ORR1B2 LTR MaLR -92 275 6 2 673 1741 178 63 3 chr6 11629712 11630062 -137886975 + ORR1B2-int LTR MaLR 5 375 -1134 2 673 36281 13 1 8 chr6 11630062 11635471 -137881566 + L1Md_A LINE L1 215 5586 -297 2 673 8695 19 1 0 chr6 11635471 11636465 -137880572 + L1Md_A LINE L1 5587 6581 -1 2 673 4618 226 47 12 chr6 11636473 11637607 -137879430 + ORR1B2-int LTR MaLR 334 1509 0 2 673 1662 168 138 9 chr6 11637607 11637926 -137879111 + ORR1B2 LTR MaLR 1 360 -7 2 673 280 264 69 69 chr6 11639185 11639315 -137877722 + L1_Mur3 LINE L1 59 188 -7524 2 673 716 335 59 32 chr6 11639340 11639511 -137877526 + L1_Mur3 LINE L1 17 209 -7519 2 673 1401 46 0 0 chr6 11639511 11639729 -137877308 + (CA)n Simple_repeat Simple_repeat 1 218 0 2 673 1820 270 93 23 chr6 11639729 11640451 -137876586 + L1_Mur3 LINE L1 452 1230 -6498 2 673 701 194 42 26 chr6 11640418 11640745 -137876292 + L1_Mur3 LINE L1 1081 1425 -4455 2 673 2021 214 49 169 chr6 11640740 11640997 -137876040 + L1_Mur3 LINE L1 3980 4239 -1638 2 673 3114 59 10 0 chr6 11640997 11641389 -137875648 - MTA_Mm LTR MaLR 0 396 1 2 673 9076 38 6 0 chr6 11641389 11642481 -137874556 - MTA_Mm-int LTR MaLR 0 1098 1 2 673 801 116 15 46 chr6 11642481 11642625 -137874412 - MTB LTR MaLR 0 421 276 2 673 2296 209 38 128 chr6 11642625 11642686 -137874351 + L1_Mur3 LINE L1 4240 4337 -1543 2 673 2757 79 50 5 chr6 11642686 11643069 -137873968 - MTB LTR MaLR 0 400 1 2 673 2296 194 7 22 chr6 11643069 11643565 -137873472 + L1_Mur3 LINE L1 4338 4826 -1054 2 673 33797 45 1 7 chr6 11643591 11648756 -137868281 + L1Md_F2 LINE L1 462 5586 -297 2 673 8117 37 4 11 chr6 11648756 11649759 -137867278 + L1Md_F2 LINE L1 5587 6582 0 2 673 7694 88 11 2 chr6 11649759 11650888 -137866149 + L1_Mm LINE L1 3445 4583 -1300 2 673 5529 94 4 9 chr6 11650888 11651662 -137865375 + L1Md_F2 LINE L1 5813 6582 0 2 673 4445 239 34 22 chr6 11651668 11652802 -137864235 + Lx6 LINE L1 6312 7459 -1 2 673 1111 105 39 0 chr6 11652803 11652984 -137864053 - Lx2B LINE L1 -4 6996 6809 2 673 34560 35 2 7 chr6 11653174 11658369 -137858668 + L1Md_T LINE L1 422 5586 -297 2 673 8197 35 14 1 chr6 11658369 11659352 -137857685 + L1Md_T LINE L1 5587 6582 0 2 673 22 91 0 11 chr6 11659644 11659670 -137857367 + AT_rich Low_complexity Low_complexity 1 26 0 2 673 3307 121 12 2 chr6 11659670 11660160 -137856877 + L1_Mus3 LINE L1 6137 6631 -7 2 673 22 91 0 11 chr6 11660160 11660222 -137856815 + AT_rich Low_complexity Low_complexity 1 62 0 2 673 381 43 0 0 chr6 11660263 11660310 -137856727 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 673 550 314 0 28 chr6 11660314 11660455 -137856582 - RSINE1 SINE B4 -26 139 3 2 673 1067 247 102 31 chr6 11660617 11661088 -137855949 + L1MC1 LINE L1 5523 6105 -1680 2 673 678 319 31 26 chr6 11661233 11661390 -137855647 - B3 SINE B2 -22 194 36 2 673 2090 220 4 176 chr6 11661390 11662128 -137854909 - RMER19C LTR ERVK 0 611 1 2 673 678 319 31 26 chr6 11662128 11662163 -137854874 - B3 SINE B2 -181 35 1 2 673 233 288 30 0 chr6 11662289 11662355 -137854682 - B2_Mm1a SINE B2 -120 73 6 2 673 308 212 25 12 chr6 11662360 11662441 -137854596 + L1MC1 LINE L1 6134 6215 -118 2 673 24 0 0 0 chr6 11663169 11663193 -137853844 + AT_rich Low_complexity Low_complexity 1 24 0 2 673 202 273 85 61 chr6 11665289 11665371 -137851666 + MIRm SINE MIR 193 276 0 2 674 441 0 0 0 chr6 11667007 11667056 -137849981 + (TTTTG)n Simple_repeat Simple_repeat 4 52 0 2 674 1131 272 154 47 chr6 11667333 11667826 -137849211 + Lx8 LINE L1 6813 7358 -115 2 674 369 0 0 0 chr6 11667826 11667867 -137849170 + (GAA)n Simple_repeat Simple_repeat 3 43 0 2 674 236 315 7 37 chr6 11667867 11667886 -137849151 + Lx8 LINE L1 7334 7352 -121 2 674 1449 39 0 0 chr6 11667886 11668066 -137848971 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 674 236 315 7 37 chr6 11668066 11668181 -137848856 + Lx8 LINE L1 7353 7464 -9 2 674 544 325 55 0 chr6 11668287 11668450 -137848587 + B4 SINE B4 54 225 -67 2 674 826 303 37 33 chr6 11668458 11668728 -137848309 - Lx8 LINE L1 -723 6750 6480 2 674 507 302 45 39 chr6 11668740 11668919 -137848118 + Lx8 LINE L1 7102 7281 -192 2 674 654 13 0 0 chr6 11668947 11669022 -137848015 + (GA)n Simple_repeat Simple_repeat 1 75 0 2 674 25 65 0 0 chr6 11669112 11669158 -137847879 + AT_rich Low_complexity Low_complexity 1 46 0 2 674 534 91 0 0 chr6 11669305 11669382 -137847655 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 674 240 122 0 0 chr6 11672509 11672550 -137844487 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 674 696 336 74 27 chr6 11672674 11672931 -137844106 - B4A SINE B4 -23 269 1 2 674 1191 84 22 27 chr6 11673408 11673591 -137843446 + L1_Mus2 LINE L1 6385 6566 0 2 674 638 84 55 14 chr6 11674660 11674805 -137842232 + (TAGA)n Simple_repeat Simple_repeat 4 154 0 2 674 1369 252 152 30 chr6 11674933 11675731 -137841306 + Lx9 LINE L1 6623 7516 -128 2 674 288 0 0 0 chr6 11675752 11675784 -137841253 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 674 459 0 0 0 chr6 11675784 11675834 -137841203 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 674 272 350 47 39 chr6 11676143 11676271 -137840766 + LTR83 LTR ERVL 3 131 -649 2 674 477 0 0 0 chr6 11676363 11676416 -137840621 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 674 761 49 10 0 chr6 11676443 11676545 -137840492 + (TC)n Simple_repeat Simple_repeat 2 104 0 2 674 821 92 271 14 chr6 11678171 11678315 -137838722 + B2_Mm2 SINE B2 1 181 -14 2 674 252 0 0 0 chr6 11678727 11678755 -137838282 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 674 186 43 0 0 chr6 11678757 11678780 -137838257 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 674 481 222 109 16 chr6 11679101 11679229 -137837808 - B1_Mur1 SINE Alu -9 140 1 2 674 3154 120 16 27 chr6 11679557 11680070 -137836967 - Lx2 LINE L1 -2 6995 6489 2 674 29 70 0 0 chr6 11680946 11681003 -137836034 + AT_rich Low_complexity Low_complexity 1 57 0 2 674 184 243 168 37 chr6 11681660 11681767 -137835270 - MIRc SINE MIR -21 247 127 2 674 896 172 219 0 chr6 11681946 11682115 -137834922 + B3 SINE B2 1 206 -10 2 674 570 29 0 0 chr6 11682395 11682463 -137834574 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 674 578 184 31 39 chr6 11683273 11683403 -137833634 - Lx2 LINE L1 -642 6355 6227 2 674 4063 128 13 2 chr6 11683405 11684041 -137832996 + Lx2 LINE L1 6354 6996 -1 2 674 361 372 58 67 chr6 11684158 11684518 -137832519 + L4 LINE RTE 786 1142 -887 2 674 310 266 129 12 chr6 11684658 11684829 -137832208 - L2a LINE L2 -17 3409 3219 2 674 424 305 46 60 chr6 11685070 11685286 -137831751 - MLT1C LTR MaLR -195 272 60 2 674 190 451 69 0 chr6 11685344 11685519 -137831518 - L2a LINE L2 -338 3081 2895 2 674 241 215 99 25 chr6 11685850 11685931 -137831106 - Lx9 LINE L1 -1 7643 7557 2 674 368 375 162 29 chr6 11686356 11686936 -137830101 - L2a LINE L2 -711 2708 2052 2 674 293 341 81 8 chr6 11687090 11687214 -137829823 - L2a LINE L2 -2688 731 599 2 674 44 20 0 0 chr6 11687222 11687273 -137829764 + AT_rich Low_complexity Low_complexity 1 51 0 2 674 1431 329 55 40 chr6 11687552 11688270 -137828767 - Lx8 LINE L1 -2 7471 6738 2 674 1152 191 77 0 chr6 11688270 11688479 -137828558 - URR1B DNA MER1_type 0 225 1 2 674 1431 329 55 40 chr6 11688479 11688554 -137828483 - Lx8 LINE L1 -736 6737 6666 2 674 586 224 9 0 chr6 11688577 11688684 -137828353 + Lx8 LINE L1 6568 6675 -798 2 674 1079 230 58 83 chr6 11688684 11689082 -137827955 + RMER17C-int LTR ERVK 242 629 -2609 2 674 2384 143 77 16 chr6 11689075 11689514 -137827523 + RMER17C-int LTR ERVK 2773 3238 0 2 674 1395 191 78 80 chr6 11689514 11689721 -137827316 + RMER17C LTR ERVK 1 184 -226 2 674 1220 32 0 19 chr6 11689721 11689879 -137827158 + (TC)n Simple_repeat Simple_repeat 2 156 0 2 674 201 39 0 0 chr6 11689879 11689904 -137827133 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 674 1395 191 78 80 chr6 11689904 11690106 -137826931 + RMER17C LTR ERVK 185 409 -1 2 674 400 242 92 11 chr6 11690331 11690515 -137826522 + L1M4 LINE L1 2229 2427 -3719 2 674 329 132 0 0 chr6 11692192 11692245 -137824792 + RMER1C Other Other 1279 1331 -11 2 674 306 73 0 0 chr6 11692245 11692286 -137824751 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 674 44 35 0 0 chr6 11692544 11692602 -137824435 + AT_rich Low_complexity Low_complexity 1 58 0 2 674 37925 31 1 1 chr6 11692602 11699447 -137817590 - L1Md_T LINE L1 0 6585 1 2 674 2750 125 18 7 chr6 11699451 11699901 -137817136 - L1_Mus4 LINE L1 -28 6608 6154 2 674 673 100 0 0 chr6 11699901 11699991 -137817046 + 4.5SRNA scRNA scRNA 1 90 -4 2 674 1463 124 22 9 chr6 11700004 11700232 -137816805 + MT2B2 LTR ERVL 304 534 -50 2 674 504 0 0 0 chr6 11700250 11700306 -137816731 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 674 237 354 105 35 chr6 11702671 11703127 -137813910 + L2b LINE L2 2669 3163 -212 2 674 631 262 77 74 chr6 11703390 11703445 -137813592 - L1MA9 LINE L1 -24 6288 6247 2 674 1380 88 0 28 chr6 11703445 11703629 -137813408 - L1_Mus2 LINE L1 -2 6564 6383 2 674 2930 60 37 3 chr6 11703629 11704012 -137813025 + MTA_Mm LTR MaLR 1 396 0 2 674 1380 88 0 28 chr6 11704012 11704038 -137812999 - L1_Mus2 LINE L1 -184 6382 6360 2 674 631 262 77 74 chr6 11704038 11704308 -137812729 - L1MA9 LINE L1 -66 6246 5962 2 674 22 0 0 0 chr6 11706708 11706730 -137810307 + AT_rich Low_complexity Low_complexity 1 22 0 2 674 311 298 17 9 chr6 11706820 11706935 -137810102 - Lx9 LINE L1 -161 7483 7368 2 674 476 249 87 38 chr6 11706950 11707134 -137809903 + Lx9 LINE L1 5856 6048 -1596 2 674 664 35 0 12 chr6 11707161 11707247 -137809790 - MTB_Mm LTR MaLR -322 85 1 2 674 319 216 67 13 chr6 11707387 11707462 -137809575 - ID SINE ID -144 80 2 2 674 246 281 0 30 chr6 11707763 11707829 -137809208 + ID4 SINE ID 4 67 -16 2 674 525 343 220 27 chr6 11708191 11708667 -137808370 - LTR33C LTR ERVL 0 629 62 2 674 198 0 0 0 chr6 11708667 11708689 -137808348 + (A)n Simple_repeat Simple_repeat 1 22 0 2 674 418 291 34 0 chr6 11708735 11708852 -137808185 + B1_Mur2 SINE Alu 18 138 -11 2 674 4682 24 0 0 chr6 11709123 11709715 -137807322 - L1Md_F2 LINE L1 -657 5925 5334 2 674 2592 77 11 0 chr6 11709715 11710068 -137806969 + L1Md_F2 LINE L1 6226 6582 0 2 674 4320 20 0 12 chr6 11710906 11711405 -137805632 + MT2_Mm LTR ERVL 1 493 0 2 674 202 362 158 7 chr6 11712575 11712714 -137804323 + L2b LINE L2 3210 3369 -6 2 674 792 295 75 31 chr6 11713212 11713600 -137803437 - MER63C DNA AcHobo -147 783 379 2 674 305 243 161 17 chr6 11713640 11713820 -137803217 + L1MC4a LINE L1 5813 6018 -1864 2 674 1753 154 76 13 chr6 11713828 11714144 -137802893 + ORR1B1 LTR MaLR 43 378 -16 2 674 315 0 0 0 chr6 11714244 11714279 -137802758 + (ATTG)n Simple_repeat Simple_repeat 3 37 0 2 674 3741 117 19 9 chr6 11714427 11715003 -137802034 + MT2B2 LTR ERVL 3 584 0 2 674 393 117 0 0 chr6 11715038 11715098 -137801939 + (CTTG)n Simple_repeat Simple_repeat 4 63 0 3 674 9662 56 8 2 chr6 11715938 11717862 -137799175 - L1Md_F2 LINE L1 0 6582 4647 3 674 304 271 136 65 chr6 11717902 11718056 -137798981 + RSINE1 SINE B4 1 165 0 3 674 35 0 0 0 chr6 11718077 11718112 -137798925 + AT_rich Low_complexity Low_complexity 1 35 0 3 674 24 85 0 0 chr6 11718394 11718453 -137798584 + AT_rich Low_complexity Low_complexity 1 59 0 3 674 302 0 36 54 chr6 11718524 11718580 -137798457 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 3 674 696 192 18 36 chr6 11718759 11718918 -137798119 + MTB_Mm LTR MaLR 1 156 -251 3 674 610 193 101 0 chr6 11718918 11719037 -137798000 + B2_Mm2 SINE B2 1 131 -64 3 674 488 111 12 0 chr6 11719082 11719163 -137797874 + (GGGA)n Simple_repeat Simple_repeat 4 85 0 3 674 415 230 11 0 chr6 11719165 11719252 -137797785 - Lx8 LINE L1 -1004 6469 6382 3 674 1783 321 60 41 chr6 11719351 11720107 -137796930 + Lx8 LINE L1 6469 7238 -235 3 674 846 70 0 0 chr6 11720176 11720290 -137796747 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 3 674 571 352 71 15 chr6 11722021 11722289 -137794748 - MLT2D LTR ERVL -64 350 68 3 674 24 53 0 0 chr6 11722808 11722846 -137794191 + AT_rich Low_complexity Low_complexity 1 38 0 3 674 298 305 18 58 chr6 11722858 11723023 -137794014 - RSINE1 SINE B4 -1 164 6 3 674 420 288 0 113 chr6 11723016 11723157 -137793880 - B4A SINE B4 -59 233 109 3 674 298 275 158 44 chr6 11723193 11723509 -137793528 + HAL1b LINE L1 1627 1978 -31 3 674 361 232 16 21 chr6 11723854 11723964 -137793073 - PB1D10 SINE Alu 0 120 2 3 674 997 148 71 0 chr6 11724132 11724314 -137792723 - B2_Mm2 SINE B2 0 195 1 3 674 198 395 37 0 chr6 11726456 11726537 -137790500 + L2b LINE L2 3264 3347 -28 3 674 746 292 71 20 chr6 11726947 11727202 -137789835 + MLT2B1 LTR ERVL 4 271 -249 3 674 1126 95 0 0 chr6 11729470 11729618 -137787419 + B1_Mus1 SINE Alu 1 148 0 3 674 37913 31 0 0 chr6 11729726 11735724 -137781313 - L1Md_T LINE L1 0 6585 491 3 674 1256 96 17 0 chr6 11735825 11736002 -137781035 + B2_Mm2 SINE B2 2 181 -14 3 674 740 243 0 0 chr6 11736042 11736178 -137780859 + B1_Mur1 SINE Alu 7 142 -7 3 674 290 236 0 0 chr6 11736289 11736344 -137780693 + RSINE1 SINE B4 2 56 -109 3 674 424 132 18 28 chr6 11736455 11736564 -137780473 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 674 361 286 19 48 chr6 11736734 11736837 -137780200 + RSINE1 SINE B4 58 157 -8 3 674 291 185 74 0 chr6 11737614 11737695 -137779342 - Lx9 LINE L1 -7 7637 7551 3 674 45 0 0 0 chr6 11737729 11737774 -137779263 + AT_rich Low_complexity Low_complexity 1 45 0 3 674 2223 282 148 16 chr6 11737858 11738837 -137778200 - Lx8 LINE L1 -30 7443 6336 3 674 1040 362 73 19 chr6 11739621 11740199 -137776838 - MER90a LTR ERV1 -5 609 1 3 674 497 281 139 21 chr6 11740234 11740514 -137776523 - L1MA8 LINE L1 -1 6290 5978 3 674 510 31 0 0 chr6 11741076 11741140 -137775897 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 674 617 286 19 88 chr6 11741225 11741440 -137775597 - Tigger5 DNA MER2_type -2169 237 38 3 674 445 267 169 54 chr6 11742102 11742363 -137774674 + B4A SINE B4 2 292 0 3 674 483 100 0 0 chr6 11742380 11742450 -137774587 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 674 28 29 0 0 chr6 11742731 11742766 -137774271 + AT_rich Low_complexity Low_complexity 1 35 0 3 674 358 354 104 9 chr6 11743746 11743957 -137773080 + L2 LINE L2 676 906 -2513 3 674 352 160 13 0 chr6 11744016 11744080 -137772957 - B2_Mm2 SINE B2 -86 112 43 3 674 1067 141 11 38 chr6 11744142 11744326 -137772711 - B2_Mm1t SINE B2 -14 179 1 3 674 216 0 0 0 chr6 11744379 11744403 -137772634 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 674 457 176 105 29 chr6 11744404 11744483 -137772554 - B1_Mus2 SINE Alu -34 113 27 3 674 6469 41 1 5 chr6 11744483 11745289 -137771748 + L1Md_F3 LINE L1 5768 6570 -14 3 674 457 176 105 29 chr6 11745289 11745314 -137771723 - B1_Mus2 SINE Alu -121 26 2 3 674 279 314 46 11 chr6 11745359 11745446 -137771591 + B3A SINE B2 89 178 -20 3 674 662 235 0 20 chr6 11745631 11745783 -137771254 - MTE2b LTR MaLR -1 378 230 3 674 236 288 17 0 chr6 11745935 11745994 -137771043 - MTE2b LTR MaLR -261 118 59 3 674 306 310 23 0 chr6 11745995 11746082 -137770955 - MTE2b LTR MaLR -281 98 10 3 674 480 35 0 0 chr6 11746196 11746254 -137770783 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 674 295 206 118 0 chr6 11746338 11746406 -137770631 - Lx8 LINE L1 -997 6476 6401 3 674 212 326 44 22 chr6 11747068 11747159 -137769878 + MIRm SINE MIR 47 139 -137 3 674 388 272 0 0 chr6 11747210 11747291 -137769746 + ID4 SINE ID 1 81 -2 3 674 657 202 35 0 chr6 11747309 11747482 -137769555 + GA-rich Low_complexity Low_complexity 2 180 0 3 674 213 57 57 0 chr6 11747482 11747517 -137769520 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 674 1389 46 0 0 chr6 11747517 11747690 -137769347 + (GGAGA)n Simple_repeat Simple_repeat 1 173 0 3 674 455 300 77 0 chr6 11747704 11747834 -137769203 + ID_B1 SINE B4 82 221 -3 3 674 559 145 8 25 chr6 11748415 11748535 -137768502 - Lx6 LINE L1 -2 7458 7341 3 674 276 266 230 35 chr6 11748559 11748672 -137768365 + RSINE1 SINE B4 31 165 0 3 674 21 95 0 0 chr6 11748672 11748735 -137768302 + AT_rich Low_complexity Low_complexity 1 63 0 3 674 304 248 117 19 chr6 11749310 11749413 -137767624 - PB1D9 SINE Alu -4 116 4 3 674 259 366 38 105 chr6 11750147 11750413 -137766624 - MLT1I-int LTR MaLR -974 413 166 3 674 272 183 0 40 chr6 11750439 11750513 -137766524 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 3 674 343 383 0 0 chr6 11750542 11750657 -137766380 - ID_B1 SINE B4 -23 201 87 3 674 1291 59 0 17 chr6 11750724 11750737 -137766300 - B2_Mm1a SINE B2 -23 170 160 3 674 396 0 0 0 chr6 11750737 11750781 -137766256 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 3 674 1291 59 0 17 chr6 11750781 11750939 -137766098 - B2_Mm1a SINE B2 -34 159 2 3 674 397 360 65 76 chr6 11751075 11751337 -137765700 - MLT1I LTR MaLR -48 363 105 3 674 910 178 6 0 chr6 11751425 11751579 -137765458 + B2_Mm1t SINE B2 2 156 -37 3 674 5194 38 0 0 chr6 11751579 11752193 -137764844 - L1Md_T LINE L1 0 6582 5969 3 674 910 178 6 0 chr6 11752193 11752207 -137764830 + B2_Mm1t SINE B2 157 170 -23 3 674 302 173 8 18 chr6 11752286 11752351 -137764686 + B2_Mm2 SINE B2 47 114 -102 3 674 30 59 0 0 chr6 11752371 11752422 -137764615 + AT_rich Low_complexity Low_complexity 1 51 0 3 674 268 234 172 76 chr6 11752825 11752982 -137764055 + MTEa LTR MaLR 208 379 0 3 674 398 276 146 0 chr6 11753460 11753583 -137763454 + B1_Mur1 SINE Alu 3 143 -6 3 674 559 318 77 82 chr6 11753586 11753939 -137763098 + MLT1B LTR MaLR 31 381 -9 3 674 612 0 0 0 chr6 11754869 11754937 -137762100 + (TC)n Simple_repeat Simple_repeat 2 69 0 3 674 189 0 0 0 chr6 11754937 11754957 -137762080 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 674 297 280 16 16 chr6 11754957 11755084 -137761953 + (TCTG)n Simple_repeat Simple_repeat 1 127 0 3 674 228 200 0 0 chr6 11755084 11755164 -137761873 + CT-rich Low_complexity Low_complexity 1 80 0 3 674 316 359 96 34 chr6 11755166 11755581 -137761456 + L2 LINE L2 2252 2692 -727 3 674 303 338 51 38 chr6 11756161 11756318 -137760719 + MLT1I LTR MaLR 19 177 -234 3 674 22 0 0 0 chr6 11756482 11756504 -137760533 + AT_rich Low_complexity Low_complexity 1 22 0 3 674 1721 154 79 57 chr6 11756561 11756753 -137760284 + ORR1C2 LTR MaLR 1 189 -195 3 674 441 0 0 0 chr6 11756753 11756802 -137760235 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 3 674 1721 154 79 57 chr6 11756802 11756975 -137760062 + ORR1C2 LTR MaLR 190 373 -11 3 674 239 271 128 12 chr6 11757014 11757100 -137759937 + MLT1I LTR MaLR 306 401 -10 3 674 339 384 49 45 chr6 11757916 11758159 -137758878 + MLT1J1-int LTR MaLR 708 951 -436 3 674 226 328 50 41 chr6 11758273 11758394 -137758643 + MLT1J1-int LTR MaLR 1111 1232 -177 3 674 481 229 48 0 chr6 11758473 11758578 -137758459 + RLTR14-int LTR ERV1 292 401 -4916 3 674 1929 171 53 11 chr6 11758583 11758944 -137758093 - ORR1C1 LTR MaLR 0 378 3 3 674 525 285 19 32 chr6 11759302 11759458 -137757579 + MLT1J1 LTR MaLR 58 211 -233 3 674 24 0 0 0 chr6 11759575 11759599 -137757438 + AT_rich Low_complexity Low_complexity 1 24 0 3 674 608 308 74 92 chr6 11759620 11759761 -137757276 + MLT1A1 LTR MaLR 6 155 -253 3 674 557 235 9 0 chr6 11759761 11759876 -137757161 + PB1D9 SINE Alu 5 120 0 3 674 608 286 75 58 chr6 11759876 11760137 -137756900 + MLT1A1 LTR MaLR 156 467 0 3 674 200 350 65 14 chr6 11760694 11760833 -137756204 + MIR SINE MIR 7 152 -110 3 674 425 283 10 0 chr6 11762711 11762810 -137754227 - PB1D10 SINE Alu -3 114 15 3 674 471 173 62 8 chr6 11763203 11763331 -137753706 - Lx6 LINE L1 -1 7459 7325 3 674 725 145 17 0 chr6 11763398 11763515 -137753522 + B1_Mur4 SINE Alu 31 149 -1 3 674 1051 48 30 12 chr6 11763518 11763685 -137753352 + (TAGA)n Simple_repeat Simple_repeat 3 172 0 3 674 598 125 9 9 chr6 11763685 11763798 -137753239 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 3 674 8023 49 2 3 chr6 11763808 11765118 -137751919 - L1Md_F3 LINE L1 -14 6570 5264 3 674 3566 28 28 9 chr6 11765118 11765546 -137751491 + RLTR10C LTR ERVK 1 436 0 3 674 4961 65 0 11 chr6 11765546 11765567 -137751470 - L1Md_F3 LINE L1 -620 5263 5243 3 674 3982 248 78 92 chr6 11765560 11766185 -137750852 - Lx6 LINE L1 -26 7434 6741 3 674 207 0 0 0 chr6 11766185 11766208 -137750829 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 674 3982 248 78 92 chr6 11766208 11766505 -137750532 - Lx6 LINE L1 -720 6740 6516 3 674 228 35 0 0 chr6 11766505 11766534 -137750503 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 674 3982 240 45 55 chr6 11766534 11767706 -137749331 - Lx6 LINE L1 -1170 6526 5396 3 674 14662 112 33 18 chr6 11767705 11768317 -137748720 - L1_Mur2 LINE L1 -2191 3686 3058 3 674 890 103 0 7 chr6 11768317 11768454 -137748583 + (TTC)n Simple_repeat Simple_repeat 3 138 0 3 674 14662 114 43 17 chr6 11768454 11770878 -137746159 - L1_Mur2 LINE L1 -2820 3057 580 3 674 1378 81 5 5 chr6 11770891 11771078 -137745959 - B2_Mm2 SINE B2 -8 187 1 3 674 4230 184 10 43 chr6 11771078 11771198 -137745839 - L1_Mur3 LINE L1 -2544 3336 3217 3 674 4302 107 5 0 chr6 11771198 11771796 -137745241 - MT2B LTR ERVL 0 601 1 3 674 4230 184 10 43 chr6 11771796 11772637 -137744400 - L1_Mur3 LINE L1 -2664 3216 2406 3 674 1621 68 31 0 chr6 11772638 11772860 -137744177 + L1Md_A LINE L1 244 472 -6252 4 674 3576 48 5 2 chr6 11772860 11773295 -137743742 - RLTR10C LTR ERVK 0 436 1 4 674 45236 11 0 1 chr6 11773295 11778328 -137738709 - MMERVK10C-int LTR ERVK 0 7581 2552 4 674 362 95 0 0 chr6 11778334 11778397 -137738640 - MMERVK10C-int LTR ERVK -5634 1947 1885 4 674 306 155 17 0 chr6 11778404 11778462 -137738575 - MMERVK10C-int LTR ERVK -5627 1779 1721 4 674 588 229 125 46 chr6 11778462 11778833 -137738204 - MMERVK10C-int LTR ERVK -4956 450 312 4 674 748 149 7 190 chr6 11778923 11779197 -137737840 - MMERVK10C-int LTR ERVK -6629 952 729 4 674 2689 50 0 0 chr6 11779195 11779538 -137737499 - MMERVK10C-int LTR ERVK -7238 343 1 4 674 3589 51 5 2 chr6 11779538 11779973 -137737064 - RLTR10C LTR ERVK 0 436 1 4 674 8573 22 26 18 chr6 11779973 11782040 -137734997 + L1Md_A LINE L1 259 2336 -3547 4 674 33889 35 2 0 chr6 11782039 11788779 -137728258 + L1Md_A LINE L1 1 5589 -297 4 674 8621 23 0 0 chr6 11788779 11789775 -137727262 + L1Md_A LINE L1 5590 6585 0 4 674 258 32 0 0 chr6 11789808 11789839 -137727198 + (A)n Simple_repeat Simple_repeat 1 31 0 4 674 296 216 0 10 chr6 11790053 11790156 -137726881 + (TTAGGG)n Simple_repeat Simple_repeat 3 104 0 4 674 545 189 27 32 chr6 11790263 11790419 -137726618 - RMER1C Other Other -1 1341 1209 4 674 26729 17 2 1 chr6 11790420 11793682 -137723355 + L1Md_A LINE L1 2321 5586 -297 4 674 8762 18 0 0 chr6 11793682 11794678 -137722359 + L1Md_A LINE L1 5587 6582 0 4 674 4090 177 56 55 chr6 11794678 11795002 -137722035 - L1_Mur3 LINE L1 -3462 2418 2083 4 674 198 71 0 0 chr6 11795002 11795030 -137722007 + (TGG)n Simple_repeat Simple_repeat 1 28 0 4 674 4090 179 72 51 chr6 11795030 11795972 -137721065 - L1_Mur3 LINE L1 -3798 2082 1113 4 674 333 155 171 17 chr6 11795973 11796084 -137720953 - B2_Mm2 SINE B2 -1 194 47 4 674 1242 69 46 0 chr6 11796096 11796269 -137720768 - B2_Mm2 SINE B2 -13 182 2 4 674 324 0 0 0 chr6 11796269 11796305 -137720732 + (GTTTG)n Simple_repeat Simple_repeat 2 37 0 4 84 1256 298 104 30 chr6 11796339 11797274 -137719763 - L1_Mur3 LINE L1 -6624 1104 101 4 675 1103 244 124 45 chr6 11797901 11798232 -137718805 - ORR1D2 LTR MaLR 0 370 14 4 675 683 202 42 0 chr6 11798223 11798342 -137718695 - B1_Mur4 SINE Alu -22 128 5 4 675 352 206 0 0 chr6 11798448 11798516 -137718521 - L1_Mur1 LINE L1 -6233 749 689 4 675 1216 203 55 58 chr6 11798518 11798863 -137718174 + Lx3C LINE L1 6625 6968 -8 4 675 1160 101 6 0 chr6 11798905 11799083 -137717954 + (GGA)n Simple_repeat Simple_repeat 2 180 0 4 675 419 326 122 54 chr6 11799101 11799380 -137717657 + LTR16E2 LTR ERVL 271 568 0 4 675 754 311 123 54 chr6 11799953 11800401 -137716636 - MLT1D LTR MaLR -6 499 21 4 675 633 296 111 37 chr6 11800506 11800776 -137716261 + B4A SINE B4 1 290 -2 4 675 3851 124 26 3 chr6 11801603 11802220 -137714817 - Lx2A1 LINE L1 -2 7006 6376 4 675 342 177 0 12 chr6 11802234 11802314 -137714723 - Lx2A1 LINE L1 -916 6092 6014 4 675 180 200 0 0 chr6 11803142 11803182 -137713855 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 4 675 238 294 15 0 chr6 11803453 11803521 -137713516 + tRNA-Ala-GCY_ tRNA tRNA 3 71 -4 4 675 192 77 0 0 chr6 11803537 11803563 -137713474 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 675 3213 198 43 16 chr6 11803784 11804510 -137712527 + Lx2B LINE L1 6256 7000 0 4 675 7102 188 37 42 chr6 11804926 11805719 -137711318 - L1_Mur3 LINE L1 -98 5782 5010 4 675 326 70 0 34 chr6 11805719 11805778 -137711259 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 4 675 7102 188 37 42 chr6 11805778 11806233 -137710804 - L1_Mur3 LINE L1 -871 5009 4561 4 675 2814 188 52 32 chr6 11806233 11806909 -137710128 + RMER6C LTR ERVK 2 690 0 4 675 7102 188 37 42 chr6 11806909 11807461 -137709576 - L1_Mur3 LINE L1 -1320 4560 3991 4 675 887 222 9 18 chr6 11807460 11807685 -137709352 + Lx7 LINE L1 5773 5995 -1701 4 675 1789 249 85 45 chr6 11807697 11808183 -137708854 + Lx7 LINE L1 6952 7479 -217 4 675 206 32 32 0 chr6 11808183 11808214 -137708823 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 675 1789 249 85 45 chr6 11808214 11808442 -137708595 + Lx7 LINE L1 7480 7695 -1 4 675 404 207 0 8 chr6 11808443 11808560 -137708477 + (TA)n Simple_repeat Simple_repeat 2 117 0 4 675 420 20 0 0 chr6 11808858 11808907 -137708130 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 675 248 324 9 9 chr6 11808910 11809016 -137708021 + A-rich Low_complexity Low_complexity 2 107 0 4 675 491 163 88 7 chr6 11809235 11809371 -137707666 + Lx3C LINE L1 6829 6975 -1 4 675 253 279 125 9 chr6 11809622 11809734 -137707303 + MLT1A1 LTR MaLR 10 134 -274 4 675 194 81 0 26 chr6 11809790 11809828 -137707209 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 4 675 308 331 171 16 chr6 11809992 11810244 -137706793 - L2 LINE L2 -1157 2262 1972 4 675 4570 176 39 16 chr6 11810484 11811584 -137705453 + L1_Mur3 LINE L1 1296 2420 -3460 4 675 6175 76 1 4 chr6 11811585 11812392 -137704645 - L1Md_F2 LINE L1 -12 6570 5766 4 675 11159 71 2 6 chr6 11812392 11813956 -137703081 + L1Md_F2 LINE L1 4175 5733 -150 4 675 3019 153 63 39 chr6 11813951 11814691 -137702346 + L1_Mur3 LINE L1 2405 3162 -2718 4 675 36206 15 2 7 chr6 11814687 11819888 -137697149 + L1Md_A LINE L1 416 5586 -297 4 675 8787 17 0 0 chr6 11819888 11820884 -137696153 + L1Md_A LINE L1 5587 6582 0 4 675 4090 177 56 55 chr6 11820884 11821208 -137695829 - L1_Mur3 LINE L1 -3462 2418 2083 4 675 198 71 0 0 chr6 11821208 11821236 -137695801 + (TGG)n Simple_repeat Simple_repeat 1 28 0 4 675 4090 179 72 51 chr6 11821236 11822178 -137694859 - L1_Mur3 LINE L1 -3798 2082 1113 4 675 333 155 171 17 chr6 11822179 11822290 -137694747 - B2_Mm2 SINE B2 -1 194 47 4 675 1242 69 46 0 chr6 11822302 11822475 -137694562 - B2_Mm2 SINE B2 -13 182 2 4 675 369 0 0 0 chr6 11822475 11822516 -137694521 + (GTTTG)n Simple_repeat Simple_repeat 2 42 0 4 675 1222 299 104 31 chr6 11822550 11823486 -137693551 - L1_Mur3 LINE L1 -6624 1104 101 4 675 1103 244 124 45 chr6 11824113 11824444 -137692593 - ORR1D2 LTR MaLR 0 370 14 4 675 683 202 42 0 chr6 11824435 11824554 -137692483 - B1_Mur4 SINE Alu -22 128 5 4 675 352 206 0 0 chr6 11824660 11824728 -137692309 - L1_Mur1 LINE L1 -6233 749 689 4 675 1216 203 55 58 chr6 11824730 11825075 -137691962 + Lx3C LINE L1 6625 6968 -8 4 675 1160 101 6 0 chr6 11825117 11825295 -137691742 + (GGA)n Simple_repeat Simple_repeat 2 180 0 4 675 419 326 122 54 chr6 11825313 11825592 -137691445 + LTR16E2 LTR ERVL 271 568 0 4 675 754 311 123 54 chr6 11826165 11826613 -137690424 - MLT1D LTR MaLR -6 499 21 4 675 633 296 111 37 chr6 11826719 11826989 -137690048 + B4A SINE B4 1 290 -2 4 675 3851 124 26 3 chr6 11827816 11828433 -137688604 - Lx2A1 LINE L1 -2 7006 6376 4 675 342 177 0 12 chr6 11828447 11828527 -137688510 - Lx2A1 LINE L1 -916 6092 6014 4 675 180 200 0 0 chr6 11829355 11829395 -137687642 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 4 675 238 294 15 0 chr6 11829666 11829734 -137687303 + tRNA-Ala-GCY_ tRNA tRNA 3 71 -4 4 675 192 77 0 0 chr6 11829750 11829776 -137687261 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 675 3231 195 46 15 chr6 11829997 11830720 -137686317 + Lx2B LINE L1 6256 7000 0 4 675 7070 189 37 42 chr6 11831139 11831932 -137685105 - L1_Mur3 LINE L1 -98 5782 5010 4 675 326 70 0 34 chr6 11831932 11831991 -137685046 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 4 675 7070 189 37 42 chr6 11831991 11832446 -137684591 - L1_Mur3 LINE L1 -871 5009 4561 4 675 2832 188 52 32 chr6 11832446 11833122 -137683915 + RMER6C LTR ERVK 2 690 0 4 675 4244 186 41 30 chr6 11833122 11833674 -137683363 - L1_Mur3 LINE L1 -1321 4559 3990 4 675 951 222 9 18 chr6 11833673 11833898 -137683139 + Lx7 LINE L1 5773 5995 -1701 4 675 2000 249 85 45 chr6 11833910 11834396 -137682641 + Lx7 LINE L1 6952 7479 -217 4 675 206 32 32 0 chr6 11834396 11834427 -137682610 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 675 2000 249 85 45 chr6 11834427 11834655 -137682382 + Lx7 LINE L1 7480 7695 -1 4 675 422 203 0 8 chr6 11834656 11834775 -137682262 + (TA)n Simple_repeat Simple_repeat 2 119 0 4 675 420 20 0 0 chr6 11835073 11835122 -137681915 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 675 248 324 9 9 chr6 11835125 11835231 -137681806 + A-rich Low_complexity Low_complexity 2 107 0 4 675 533 163 88 7 chr6 11835450 11835586 -137681451 + Lx3C LINE L1 6829 6975 -1 4 675 254 279 125 9 chr6 11835837 11835949 -137681088 + MLT1A1 LTR MaLR 10 134 -274 4 675 194 81 0 26 chr6 11836005 11836043 -137680994 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 4 675 301 331 171 16 chr6 11836207 11836459 -137680578 - L2 LINE L2 -1157 2262 1972 4 675 4862 177 39 16 chr6 11836699 11837799 -137679238 + Lx6 LINE L1 1296 2420 -3460 4 675 6160 76 1 4 chr6 11837800 11838607 -137678430 - L1Md_F2 LINE L1 -12 6570 5766 4 675 11718 71 2 6 chr6 11838607 11840171 -137676866 + L1Md_F2 LINE L1 4175 5733 -150 4 675 3231 153 63 39 chr6 11840166 11840906 -137676131 + Lx6 LINE L1 2405 3162 -2718 4 675 37764 16 2 7 chr6 11840902 11846103 -137670934 + L1Md_A LINE L1 416 5586 -297 4 675 8780 15 0 0 chr6 11846103 11847099 -137669938 + L1Md_A LINE L1 5587 6582 0 4 675 312 48 0 0 chr6 11847128 11847170 -137669867 + (A)n Simple_repeat Simple_repeat 1 42 0 4 675 1171 174 178 0 chr6 11847170 11847468 -137669569 + Lx6 LINE L1 3196 3546 -2334 4 675 4176 185 106 31 chr6 11847452 11849014 -137668023 + Lx6 LINE L1 5214 6930 -530 4 675 638 169 208 12 chr6 11849005 11849173 -137667864 + Lx6 LINE L1 7079 7279 -181 4 675 28 48 0 0 chr6 11849489 11849531 -137667506 + AT_rich Low_complexity Low_complexity 1 42 0 4 675 1509 215 52 11 chr6 11850987 11851354 -137665683 + ORR1C2 LTR MaLR 3 384 0 4 675 212 329 66 0 chr6 11851640 11851716 -137665321 - ID2 SINE ID -2 81 1 4 675 306 259 14 119 chr6 11852102 11852312 -137664725 + B2_Mm2 SINE B2 3 190 -5 4 675 1215 117 39 0 chr6 11852318 11852498 -137664539 + B2_Mm2 SINE B2 2 188 -7 4 675 261 0 0 0 chr6 11852502 11852531 -137664506 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 4 675 657 231 0 23 chr6 11852551 11852698 -137664339 + B1_Mur2 SINE Alu 1 136 -13 4 675 649 243 14 14 chr6 11852699 11852837 -137664200 + B1_Mur2 SINE Alu 2 139 -10 4 675 472 231 115 8 chr6 11853620 11853742 -137663295 + B1_Mur4 SINE Alu 9 143 -7 4 675 538 226 19 0 chr6 11853955 11854061 -137662976 - PB1D9 SINE Alu -11 109 2 4 675 266 208 0 145 chr6 11855608 11855625 -137661412 + B4A SINE B4 79 86 -206 4 675 369 186 328 0 chr6 11855625 11855728 -137661309 + B1_Mm SINE Alu 2 137 -12 4 675 1036 96 14 0 chr6 11856529 11856675 -137660362 + B1_Mus1 SINE Alu 1 148 0 4 675 26 30 0 0 chr6 11857836 11857869 -137659168 + GC_rich Low_complexity Low_complexity 1 33 0 4 675 393 22 0 0 chr6 11859131 11859177 -137657860 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 675 345 236 0 0 chr6 11859236 11859308 -137657729 - PB1D10 SINE Alu -38 79 8 4 675 422 371 106 30 chr6 11860239 11860503 -137656534 + MLT1I LTR MaLR 70 353 -58 4 675 238 354 0 0 chr6 11861004 11861086 -137655951 + ID4 SINE ID 2 83 0 4 675 226 293 12 0 chr6 11861090 11861172 -137655865 + A-rich Low_complexity Low_complexity 3 85 0 4 675 25 0 0 0 chr6 11861467 11861492 -137655545 + AT_rich Low_complexity Low_complexity 1 25 0 4 675 338 322 167 45 chr6 11861495 11861775 -137655262 + B4 SINE B4 3 289 -3 4 675 25 0 0 0 chr6 11862586 11862611 -137654426 + AT_rich Low_complexity Low_complexity 1 25 0 4 675 27 29 0 0 chr6 11862967 11863001 -137654036 + AT_rich Low_complexity Low_complexity 1 34 0 4 675 600 290 7 7 chr6 11863035 11863181 -137653856 + ID_B1 SINE B4 79 224 0 4 675 218 122 24 0 chr6 11863181 11863222 -137653815 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 4 675 780 261 67 7 chr6 11864065 11864335 -137652702 - B4A SINE B4 -6 286 1 5 675 876 164 7 0 chr6 11864562 11864708 -137652329 + URR1A DNA MER1_type 79 225 -1 5 675 470 245 47 35 chr6 11864708 11864731 -137652306 - CYRA11_Mm Unknown Y-chromosome -298 319 149 5 675 251 330 31 52 chr6 11864989 11865085 -137651952 - MLT2F LTR ERVL -270 393 300 5 675 557 304 44 48 chr6 11865099 11865348 -137651689 - ERVL-E-int LTR ERVL -614 5053 4806 5 675 806 182 0 13 chr6 11865362 11865512 -137651525 + B1_Mus1 SINE Alu 1 148 0 5 675 495 333 54 9 chr6 11865659 11865883 -137651154 - ERVL-E-int LTR ERVL -1033 4634 4401 5 675 417 354 59 52 chr6 11865979 11866144 -137650893 - ERVL-E-int LTR ERVL -1733 3934 3773 5 675 252 0 0 0 chr6 11866144 11866172 -137650865 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 675 417 354 59 52 chr6 11866172 11866393 -137650644 - ERVL-E-int LTR ERVL -1895 3772 3545 5 675 1191 241 82 49 chr6 11866796 11867201 -137649836 - RLTR33 LTR ERVK -86 592 175 5 675 638 315 26 30 chr6 11867594 11867859 -137649178 + L1M3e LINE L1 1749 2012 -5018 5 675 616 259 40 18 chr6 11867885 11868109 -137648928 + L1MA9 LINE L1 5936 6164 -148 5 675 455 282 22 34 chr6 11868132 11868279 -137648758 + B1F SINE Alu 1 148 -1 5 675 240 191 62 16 chr6 11868293 11868357 -137648680 + L1MA9 LINE L1 6176 6242 -70 5 675 263 295 35 9 chr6 11868372 11868485 -137648552 + PB1D7 SINE Alu 5 120 0 5 675 240 333 12 24 chr6 11868488 11868571 -137648466 + ID4_ SINE ID 2 83 0 5 675 454 309 22 0 chr6 11868644 11868780 -137648257 + ID_B1 SINE B4 78 216 -8 5 675 428 228 123 23 chr6 11868801 11868931 -137648106 - B1F SINE Alu 0 149 7 5 675 244 196 0 0 chr6 11869267 11869318 -137647719 + B3 SINE B2 160 210 -6 5 675 285 284 67 19 chr6 11869630 11869734 -137647303 - MLT1A1 LTR MaLR -299 109 1 5 675 203 32 0 61 chr6 11869802 11869835 -137647202 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 5 675 1650 143 31 34 chr6 11870022 11870561 -137646476 + RMER6A LTR ERVK 109 752 -4 5 675 495 256 118 79 chr6 11870564 11870742 -137646295 + B3A SINE B2 13 197 -1 5 675 1020 302 130 17 chr6 11870962 11871376 -137645661 + MLT1C LTR MaLR 4 464 -3 5 675 434 265 107 13 chr6 11871394 11871543 -137645494 + MLT1C-int LTR MaLR 16 178 -1193 5 675 276 360 33 7 chr6 11871604 11871755 -137645282 + MLT1C-int LTR MaLR 288 442 -929 5 675 1124 228 31 0 chr6 11871897 11872231 -137644806 - MTC LTR MaLR -24 397 1 5 675 435 313 101 17 chr6 11872688 11872867 -137644170 + MER20 DNA MER1_type 25 218 -1 5 675 231 61 0 0 chr6 11872932 11872965 -137644072 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 675 31 0 0 0 chr6 11872978 11873009 -137644028 + AT_rich Low_complexity Low_complexity 1 31 0 5 675 1436 253 83 58 chr6 11873866 11874349 -137642688 - Lx7 LINE L1 -1056 6640 6146 5 675 256 318 49 71 chr6 11874443 11874626 -137642411 + RMER4A LTR ERVK 8 186 -280 5 675 1355 223 104 3 chr6 11875014 11875247 -137641790 - Lx7 LINE L1 -10 5870 5603 5 675 2623 103 48 13 chr6 11875247 11875640 -137641397 - MTB_Mm LTR MaLR 0 407 1 5 675 1355 223 104 3 chr6 11875640 11875744 -137641293 - Lx7 LINE L1 -278 5602 5499 5 675 244 75 150 0 chr6 11875739 11875779 -137641258 + Lx LINE L1 5788 5833 -821 5 675 198 0 0 0 chr6 11876095 11876117 -137640920 + (CGGG)n Simple_repeat Simple_repeat 1 22 0 5 675 451 187 117 36 chr6 11877851 11877962 -137639075 + PB1D9 SINE Alu 1 120 0 5 675 305 221 25 25 chr6 11879097 11879176 -137637861 - MADE2 DNA Mariner 0 80 2 5 675 288 91 0 0 chr6 11879614 11879658 -137637379 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 5 675 190 136 0 43 chr6 11880688 11880734 -137636303 + CT-rich Low_complexity Low_complexity 1 44 0 5 675 298 329 95 6 chr6 11881678 11881846 -137635191 + MER46C DNA MER2_type 31 213 -125 5 675 220 200 22 0 chr6 11883183 11883228 -137633809 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 675 282 179 0 0 chr6 11883473 11883529 -137633508 + GA-rich Low_complexity Low_complexity 5 60 0 5 675 249 305 0 0 chr6 11883814 11883896 -137633141 + (ATG)n Simple_repeat Simple_repeat 2 83 0 5 675 252 0 0 0 chr6 11885159 11885187 -137631850 + (T)n Simple_repeat Simple_repeat 1 28 0 5 675 1484 54 0 11 chr6 11887430 11887617 -137629420 - B2_Mm1a SINE B2 -7 186 2 5 675 191 207 83 33 chr6 11888062 11888122 -137628915 - L3 LINE CR1 -3468 1021 959 5 675 1242 41 0 0 chr6 11888888 11889035 -137628002 + B1_Mus1 SINE Alu 2 148 0 5 675 506 298 8 0 chr6 11889602 11889733 -137627304 + ID_B1 SINE B4 86 217 -7 5 675 3906 69 17 8 chr6 11889945 11890471 -137626566 - L1_Mus1 LINE L1 0 6567 6037 5 675 319 295 24 16 chr6 11890538 11890662 -137626375 - PB1 SINE Alu 0 127 3 5 675 26 50 0 0 chr6 11891678 11891718 -137625319 + AT_rich Low_complexity Low_complexity 1 40 0 5 675 420 37 0 0 chr6 11891867 11891921 -137625116 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 675 256 306 0 0 chr6 11891928 11891990 -137625047 - ID_B1 SINE B4 -17 207 146 5 675 34 0 0 0 chr6 11892515 11892549 -137624488 + AT_rich Low_complexity Low_complexity 1 34 0 5 675 325 424 6 23 chr6 11892759 11892933 -137624104 + L2a LINE L2 2959 3129 -297 5 675 295 321 61 75 chr6 11893182 11893475 -137623562 + B4A SINE B4 3 291 -1 5 675 507 291 123 103 chr6 11894153 11894516 -137622521 - MLT1F1 LTR MaLR -5 564 195 5 675 400 275 176 18 chr6 11894733 11895011 -137622026 - L2 LINE L2 -1636 1783 1462 5 675 307 217 101 28 chr6 11895013 11895122 -137621915 + ORR1E LTR MaLR 3 119 -240 5 675 1032 261 67 75 chr6 11895147 11895520 -137621517 - MTEa LTR MaLR -8 371 2 5 675 402 320 13 134 chr6 11896171 11896220 -137620817 - PB1D10 SINE Alu -1 148 106 5 675 1149 68 0 13 chr6 11896220 11896370 -137620667 - B1_Mus1 SINE Alu 0 148 1 5 675 402 232 42 59 chr6 11896370 11896479 -137620558 - PB1D10 SINE Alu -9 108 1 5 675 284 305 40 63 chr6 11896734 11896860 -137620177 - ID_B1 SINE B4 0 224 102 5 675 1509 197 84 0 chr6 11897071 11897416 -137619621 - ORR1D1 LTR MaLR 0 374 1 5 675 201 74 0 0 chr6 11897507 11897534 -137619503 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 675 507 305 101 5 chr6 11897580 11897768 -137619269 - ID_B1 SINE B4 -13 211 6 5 675 2127 169 30 3 chr6 11898086 11898459 -137618578 - ORR1B1 LTR MaLR -2 392 10 5 675 1037 263 30 63 chr6 11898533 11898895 -137618142 - MTE2b LTR MaLR 0 379 30 5 675 878 284 108 25 chr6 11899277 11900099 -137616938 - L1MA5 LINE L1 -303 5997 5102 5 675 1530 204 25 79 chr6 11900099 11900493 -137616544 - ORR1D1 LTR MaLR -1 373 1 5 675 878 280 79 24 chr6 11900493 11900673 -137616364 - L1MA5 LINE L1 -1042 5101 4901 5 675 247 293 189 21 chr6 11900710 11900853 -137616184 - B4A SINE B4 -121 171 5 5 675 322 220 132 25 chr6 11901069 11901190 -137615847 - L1MA5 LINE L1 -2915 3228 3095 5 675 22 0 0 0 chr6 11901219 11901241 -137615796 + AT_rich Low_complexity Low_complexity 1 22 0 5 675 402 266 0 0 chr6 11901368 11901447 -137615590 + RSINE1 SINE B4 3 81 -84 5 675 1668 131 92 6 chr6 11902478 11902793 -137614244 - Lx3A LINE L1 -6 6975 6634 5 675 1468 104 117 0 chr6 11903852 11904092 -137612945 - Lx3_Mus LINE L1 -615 6394 6127 5 675 298 349 25 82 chr6 11904526 11904685 -137612352 - LTR41B LTR ERVL -590 168 19 5 675 36 40 0 0 chr6 11904925 11904975 -137612062 + AT_rich Low_complexity Low_complexity 1 50 0 5 675 571 259 92 40 chr6 11904978 11905151 -137611886 - B3A SINE B2 -11 187 6 5 675 647 174 112 15 chr6 11905190 11905324 -137611713 + B1_Mur3 SINE Alu 3 149 0 5 675 703 108 22 37 chr6 11905941 11906076 -137610961 - L1_Mus3 LINE L1 0 6638 6506 5 675 5745 1 0 0 chr6 11906076 11906729 -137610308 + L1_Mm LINE L1 3393 4045 -1838 5 675 9688 101 197 7 chr6 11906710 11908352 -137608685 - L1_Mm LINE L1 -75 5808 3855 5 675 963 221 32 9 chr6 11909216 11909435 -137607602 - URR1B DNA MER1_type -1 224 1 5 675 219 36 0 0 chr6 11911694 11911722 -137605315 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 675 262 346 129 0 chr6 11911830 11911931 -137605106 - PB1D7 SINE Alu 0 120 7 5 675 362 160 0 0 chr6 11912195 11912270 -137604767 - L1Md_A LINE L1 -3 6579 6505 5 675 326 147 15 0 chr6 11912331 11912399 -137604638 + (TATG)n Simple_repeat Simple_repeat 2 70 0 5 675 37892 30 1 0 chr6 11913390 11920017 -137597020 - L1Md_T LINE L1 -3 6582 1 5 675 31505 106 21 3 chr6 11920029 11926262 -137590775 - L1_Mus1 LINE L1 0 6567 215 5 675 409 280 143 18 chr6 11926296 11926569 -137590468 + Charlie1a DNA MER1_type 1131 1437 -18 5 676 404 315 55 9 chr6 11927628 11927737 -137589300 - B1F1 SINE Alu -23 126 13 5 676 336 325 89 0 chr6 11927899 11928022 -137589015 - B1F1 SINE Alu -15 134 1 5 676 344 244 25 37 chr6 11927942 11928023 -137589014 - B4A SINE B4 -128 164 85 5 676 3577 117 15 9 chr6 11928470 11929015 -137588022 - Lx LINE L1 -2 6652 6105 5 676 398 291 111 0 chr6 11930083 11930200 -137586837 + B4A SINE B4 4 133 -159 5 676 23 68 0 0 chr6 11930391 11930435 -137586602 + AT_rich Low_complexity Low_complexity 1 44 0 5 676 1296 242 65 94 chr6 11930774 11931377 -137585660 - Lx9 LINE L1 -48 7596 7012 5 676 21299 41 3 1 chr6 11931394 11934032 -137583005 + L1Md_F2 LINE L1 2944 5586 -297 5 676 7893 48 12 6 chr6 11934032 11935022 -137582015 + L1Md_F2 LINE L1 5587 6582 0 5 676 2137 235 91 18 chr6 11935022 11935579 -137581458 - Lx9 LINE L1 -646 6998 6256 5 676 225 333 26 0 chr6 11935923 11936001 -137581036 - ID4 SINE ID 0 83 4 5 676 885 45 0 0 chr6 11936214 11936324 -137580713 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 5 676 424 229 48 0 chr6 11936719 11936824 -137580213 - Lx7 LINE L1 -480 7216 7107 5 676 196 428 36 5 chr6 11937830 11938053 -137578984 - MIR SINE MIR -15 247 18 5 676 28 0 0 0 chr6 11940416 11940444 -137576593 + AT_rich Low_complexity Low_complexity 1 28 0 5 676 213 220 0 20 chr6 11941087 11941138 -137575899 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5 676 314 365 9 19 chr6 11941764 11941870 -137575167 + PB1D10 SINE Alu 13 117 0 5 676 530 324 32 5 chr6 11942464 11942681 -137574356 - ID_B1 SINE B4 0 224 2 6 676 434 235 34 17 chr6 11942752 11942869 -137574168 - MTE2a LTR MaLR -10 369 251 6 676 492 244 33 8 chr6 11942899 11943019 -137574018 - MTE2a LTR MaLR -253 126 4 6 676 288 77 0 0 chr6 11943090 11943129 -137573908 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 6 676 1251 102 6 6 chr6 11943130 11943307 -137573730 - B2_Mm2 SINE B2 -18 177 1 6 676 535 274 39 24 chr6 11943628 11943755 -137573282 + B4 SINE B4 8 136 -156 6 676 4117 123 5 22 chr6 11943820 11944460 -137572577 - Lx3A LINE L1 -7 6974 6346 6 676 3026 87 16 0 chr6 11944461 11944887 -137572150 + L1_Mur1 LINE L1 3997 4429 -1457 6 676 323 180 80 0 chr6 11945373 11945473 -137571564 - Lx5 LINE L1 0 7050 6943 6 676 3322 198 14 26 chr6 11945638 11946293 -137570744 - Lx5 LINE L1 -36 7014 6368 6 676 21 0 0 0 chr6 11946515 11946536 -137570501 + AT_rich Low_complexity Low_complexity 1 21 0 6 676 576 202 0 0 chr6 11947638 11947747 -137569290 - Lx2 LINE L1 -19 6978 6870 6 676 244 200 19 57 chr6 11947747 11947800 -137569237 - B1F2 SINE Alu -96 53 3 6 676 689 240 52 29 chr6 11947888 11948060 -137568977 + ORR1D1 LTR MaLR 1 176 -198 6 676 1162 174 25 21 chr6 11948010 11948250 -137568787 - ORR1D-int LTR MaLR -860 510 270 6 676 241 246 28 28 chr6 11948235 11948306 -137568731 + ORR1D1 LTR MaLR 142 212 -162 6 676 1511 272 12 11 chr6 11948295 11948691 -137568346 + ORR1D2-int LTR MaLR 919 1300 -70 6 676 406 246 8 85 chr6 11949074 11949203 -137567834 + ORR1D2-int LTR MaLR 1252 1370 0 6 676 447 281 58 15 chr6 11949203 11949340 -137567697 + ORR1D2 LTR MaLR 1 143 -227 6 676 449 241 0 0 chr6 11949426 11949513 -137567524 + B3 SINE B2 1 87 -129 6 676 459 303 32 38 chr6 11950997 11951155 -137565882 - ID_B1 SINE B4 -8 216 60 6 676 3003 130 83 18 chr6 11951321 11951885 -137565152 - L1_Mur3 LINE L1 -1430 4450 3850 6 676 2677 183 32 20 chr6 11951902 11952487 -137564550 + L1_Mur3 LINE L1 2077 2668 -3212 6 676 266 307 13 0 chr6 11952996 11953071 -137563966 + ID4_ SINE ID 6 81 -2 6 676 1061 232 151 40 chr6 11953228 11953605 -137563432 - MTD LTR MaLR 0 419 1 6 676 2533 120 15 2 chr6 11955431 11955824 -137561213 - Lx2 LINE L1 0 6997 6600 6 676 314 23 23 0 chr6 11956073 11956116 -137560921 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 676 1097 80 86 0 chr6 11958991 11959166 -137557871 - B2_Mm2 SINE B2 -5 190 1 6 676 26 82 0 0 chr6 11959241 11959302 -137557735 + AT_rich Low_complexity Low_complexity 1 61 0 6 676 242 24 0 0 chr6 11959934 11959976 -137557061 - L1_Mus4 LINE L1 -6 6630 6589 6 676 2173 71 7 10 chr6 11960010 11960307 -137556730 + L1Md_F2 LINE L1 6275 6570 -12 6 676 24 0 0 0 chr6 11960508 11960532 -137556505 + AT_rich Low_complexity Low_complexity 1 24 0 6 676 228 228 109 66 chr6 11960539 11960722 -137556315 - YREP_Mm Unknown Unknown -971 841 651 6 676 402 266 146 9 chr6 11962235 11962345 -137554692 - B1F2 SINE Alu -9 140 16 6 676 193 280 158 71 chr6 11962986 11963113 -137553924 - MIRc SINE MIR -100 168 31 6 676 245 318 42 74 chr6 11963177 11963272 -137553765 + PB1D9 SINE Alu 12 103 -17 6 676 420 20 0 0 chr6 11963284 11963333 -137553704 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 6 676 189 163 0 0 chr6 11963389 11963438 -137553599 + T-rich Low_complexity Low_complexity 1 49 0 6 676 26 64 0 0 chr6 11963506 11963553 -137553484 + AT_rich Low_complexity Low_complexity 1 47 0 6 676 1107 260 90 48 chr6 11964754 11965089 -137551948 - MTE2b LTR MaLR -11 368 20 6 676 626 296 51 6 chr6 11965312 11965489 -137551548 - B4 SINE B4 -3 289 105 6 676 21 0 0 0 chr6 11966711 11966732 -137550305 + AT_rich Low_complexity Low_complexity 1 21 0 6 676 23 0 0 0 chr6 11967777 11967800 -137549237 + AT_rich Low_complexity Low_complexity 1 23 0 6 676 691 104 78 9 chr6 11968238 11968354 -137548683 - URR1B DNA MER1_type 0 225 102 6 676 3594 164 27 14 chr6 11968364 11969158 -137547879 - Lx4B LINE L1 -7 7043 6191 6 676 371 274 24 0 chr6 11969160 11969244 -137547793 - URR1B DNA MER1_type -140 85 1 6 676 489 34 0 0 chr6 11969278 11969337 -137547700 + (CATA)n Simple_repeat Simple_repeat 1 59 0 6 676 479 287 23 0 chr6 11969652 11969781 -137547256 + B1_Mur1 SINE Alu 14 145 -4 6 676 644 312 73 0 chr6 11969830 11970022 -137547015 + B4 SINE B4 18 223 -69 6 676 233 77 0 49 chr6 11970026 11970067 -137546970 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 6 676 1553 184 120 28 chr6 11970171 11970529 -137546508 - MTC LTR MaLR -23 398 8 6 676 5064 184 70 33 chr6 11970532 11971744 -137545293 - MTC-int LTR MaLR 0 1258 2 6 676 1478 227 74 57 chr6 11971747 11971896 -137545141 - MTC LTR MaLR -8 413 253 6 676 501 17 0 0 chr6 11971896 11971954 -137545083 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 676 1478 227 74 57 chr6 11971954 11972210 -137544827 - MTC LTR MaLR -169 252 1 6 676 225 196 0 0 chr6 11972696 11972742 -137544295 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 676 297 0 0 0 chr6 11972875 11972908 -137544129 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 676 411 21 0 0 chr6 11972908 11972955 -137544082 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 676 228 303 142 19 chr6 11973310 11973465 -137543572 - Lx8 LINE L1 -7 7466 7293 6 676 345 308 98 15 chr6 11973521 11973653 -137543384 + Lx8 LINE L1 6557 6699 -774 6 676 183 100 0 0 chr6 11973807 11973837 -137543200 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 676 1165 74 0 13 chr6 11973843 11973993 -137543044 - B1_Mus1 SINE Alu 0 148 1 6 676 234 0 0 0 chr6 11973997 11974023 -137543014 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 6 676 769 32 0 0 chr6 11974024 11974119 -137542918 - B1_Mm SINE Alu -6 141 47 6 676 274 239 72 29 chr6 11974061 11974130 -137542907 - RLTR25B LTR ERVK -519 509 438 6 676 3388 78 57 2 chr6 11974153 11974630 -137542407 - Lx3_Mus LINE L1 -36 6973 6471 6 676 3784 141 96 3 chr6 11974625 11975314 -137541723 - L1_Mur2 LINE L1 -235 5642 4890 6 676 32 43 0 0 chr6 11975321 11975367 -137541670 + AT_rich Low_complexity Low_complexity 1 46 0 6 676 270 0 0 0 chr6 11976645 11976675 -137540362 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 676 2057 98 136 49 chr6 11976685 11977091 -137539946 - RLTR47_MM LTR ERV1 -91 441 1 6 676 612 307 9 9 chr6 11977333 11977560 -137539477 - MuRRS4-int LTR ERV1 -293 4770 4544 6 676 24 0 0 0 chr6 11978400 11978424 -137538613 + AT_rich Low_complexity Low_complexity 1 24 0 6 676 2179 228 88 58 chr6 11979264 11979414 -137537623 - Lx7 LINE L1 -1328 6368 6212 6 676 710 149 0 72 chr6 11979414 11979566 -137537471 - L1Md_F2 LINE L1 -2 6580 6440 6 676 2179 228 88 58 chr6 11979566 11980146 -137536891 - Lx7 LINE L1 -1485 6211 5616 6 676 4933 218 149 23 chr6 11980148 11981263 -137535774 - Lx7 LINE L1 -1475 4408 3015 6 676 468 0 0 0 chr6 11981263 11981315 -137535722 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 676 4933 175 118 20 chr6 11981315 11982170 -137534867 - Lx7 LINE L1 -2865 3015 2032 6 676 192 77 0 0 chr6 11982181 11982207 -137534830 + (TGG)n Simple_repeat Simple_repeat 3 28 0 6 676 819 67 0 0 chr6 11982208 11982327 -137534710 + (TG)n Simple_repeat Simple_repeat 1 119 0 6 676 25 0 0 0 chr6 11982400 11982425 -137534612 + AT_rich Low_complexity Low_complexity 1 25 0 6 676 251 161 0 18 chr6 11982474 11982531 -137534506 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 6 676 4075 100 5 30 chr6 11982574 11983183 -137533854 - Lx LINE L1 -2 6652 6059 6 676 1144 265 63 37 chr6 11983259 11983894 -137533143 - Lx9 LINE L1 -1367 6277 5507 6 676 1560 273 39 34 chr6 11983925 11984573 -137532464 + L1_Rod LINE L1 4830 5480 -367 6 676 191 95 0 45 chr6 11985663 11985707 -137531330 + (TTTTTG)n Simple_repeat Simple_repeat 5 46 0 6 676 1181 48 0 20 chr6 11985709 11985859 -137531178 - B1_Mus1 SINE Alu 0 148 2 6 676 21 0 0 0 chr6 11985957 11985978 -137531059 + AT_rich Low_complexity Low_complexity 1 21 0 6 676 922 263 16 84 chr6 11986043 11986354 -137530683 + B4A SINE B4 2 291 -1 6 676 216 241 0 33 chr6 11986355 11986415 -137530622 + (CATA)n Simple_repeat Simple_repeat 1 58 0 6 676 22 0 0 0 chr6 11986820 11986842 -137530195 + AT_rich Low_complexity Low_complexity 1 22 0 6 676 992 96 0 0 chr6 11986943 11987078 -137529959 + B1_Mus1 SINE Alu 2 136 -12 6 676 215 31 31 0 chr6 11987078 11987110 -137529927 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 6 676 183 341 44 92 chr6 11987504 11987753 -137529284 - MIRb SINE MIR -25 243 7 6 676 630 49 0 0 chr6 11989486 11989568 -137527469 + (TC)n Simple_repeat Simple_repeat 2 83 0 6 676 225 208 0 19 chr6 11989949 11990003 -137527034 + Charlie4 DNA MER1_type 1413 1465 -496 6 676 239 333 45 62 chr6 11991377 11991489 -137525548 + B1F2 SINE Alu 13 122 -27 6 676 477 127 0 0 chr6 11991533 11991612 -137525425 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 676 294 299 41 10 chr6 11991799 11991897 -137525140 - MER5A DNA MER1_type -82 107 7 6 676 22 0 0 0 chr6 11993542 11993564 -137523473 + AT_rich Low_complexity Low_complexity 1 22 0 6 676 252 0 0 0 chr6 11993970 11993998 -137523039 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 676 874 199 39 57 chr6 11994075 11994304 -137522733 - URR1B DNA MER1_type 0 225 1 6 676 26 0 0 0 chr6 11994717 11994743 -137522294 + AT_rich Low_complexity Low_complexity 1 26 0 6 676 23 0 0 0 chr6 11996422 11996445 -137520592 + AT_rich Low_complexity Low_complexity 1 23 0 6 676 828 296 111 15 chr6 11998745 11999006 -137518031 + B4A SINE B4 1 286 -6 6 676 1018 103 18 6 chr6 12000123 12000289 -137516748 + (GGAAA)n Simple_repeat Simple_repeat 5 172 0 1 676 532 228 114 63 chr6 12000358 12000533 -137516504 - B3 SINE B2 -23 172 1 2 676 223 196 0 42 chr6 12000860 12000908 -137516129 + PB1D10 SINE Alu 64 109 -8 3 676 25 31 0 0 chr6 12001017 12001049 -137515988 + AT_rich Low_complexity Low_complexity 1 32 0 4 676 1248 153 19 33 chr6 12001980 12002251 -137514786 - Lx2 LINE L1 -726 6271 6005 5 676 28 0 0 0 chr6 12002884 12002912 -137514125 + AT_rich Low_complexity Low_complexity 1 28 0 6 676 291 321 73 58 chr6 12002948 12003214 -137513823 + RSINE1 SINE B4 3 275 -17 7 676 401 156 0 13 chr6 12003236 12003314 -137513723 + (TG)n Simple_repeat Simple_repeat 1 77 0 8 676 268 262 93 46 chr6 12003405 12003513 -137513524 - PB1D9 SINE Alu -3 117 5 9 676 25 31 0 0 chr6 12003663 12003695 -137513342 + AT_rich Low_complexity Low_complexity 1 32 0 1 676 212 385 0 46 chr6 12003803 12003890 -137513147 + PB1D10 SINE Alu 1 83 -34 1 676 316 319 110 0 chr6 12004219 12004310 -137512727 - B3A SINE B2 -30 168 68 1 676 460 291 105 109 chr6 12004389 12004886 -137512151 - RMER21B LTR ERV1 -273 569 75 1 676 207 167 0 0 chr6 12004919 12004955 -137512082 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 676 664 227 50 0 chr6 12005192 12005333 -137511704 + B1_Mur1 SINE Alu 1 148 -1 1 676 204 214 0 0 chr6 12005333 12005375 -137511662 + GA-rich Low_complexity Low_complexity 5 46 0 1 676 228 211 56 0 chr6 12005554 12005625 -137511412 + CT-rich Low_complexity Low_complexity 1 75 0 1 676 453 272 87 23 chr6 12007342 12007515 -137509522 - B4 SINE B4 -10 282 99 1 676 234 292 58 22 chr6 12007663 12007784 -137509253 - MIR3 SINE MIR -48 160 48 1 676 515 277 50 0 chr6 12008110 12008229 -137508808 - ID_B1 SINE B4 -7 217 93 2 676 217 342 37 62 chr6 12010064 12010079 -137506958 + ID SINE ID 64 76 -148 2 676 250 353 16 57 chr6 12010079 12010202 -137506835 + PB1D9 SINE Alu 1 118 -31 2 676 375 350 78 10 chr6 12010490 12010695 -137506342 + Tigger5 DNA MER2_type 20 238 -2168 2 676 21 0 0 0 chr6 12014298 12014319 -137502718 + AT_rich Low_complexity Low_complexity 1 21 0 2 676 180 77 0 0 chr6 12014327 12014353 -137502684 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 676 706 232 78 44 chr6 12014354 12014534 -137502503 - B3 SINE B2 -29 187 2 2 676 285 75 0 0 chr6 12015089 12015129 -137501908 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 676 294 361 152 25 chr6 12015131 12015603 -137501434 + L2b LINE L2 1946 2477 -942 2 676 402 214 133 0 chr6 12015670 12015768 -137501269 + PB1D9 SINE Alu 2 112 -8 2 676 567 43 0 0 chr6 12016060 12016130 -137500907 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 676 2486 101 66 13 chr6 12016159 12016551 -137500486 - Lx4B LINE L1 -998 6060 5648 3 676 3136 127 20 2 chr6 12016533 12017023 -137500014 + Lx4B LINE L1 5173 5671 -206 3 676 216 297 166 13 chr6 12017107 12017264 -137499773 + L2b LINE L2 2977 3157 -218 2 676 27 29 0 0 chr6 12017319 12017353 -137499684 + AT_rich Low_complexity Low_complexity 1 34 0 3 676 220 0 0 79 chr6 12017690 12017728 -137499309 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 676 195 372 49 0 chr6 12017820 12017922 -137499115 - MIRc SINE MIR -122 146 40 3 676 267 385 0 0 chr6 12018067 12018158 -137498879 + MIR SINE MIR 31 121 -87 3 676 189 74 0 0 chr6 12018534 12018561 -137498476 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 676 23 33 0 0 chr6 12019063 12019093 -137497944 + AT_rich Low_complexity Low_complexity 1 30 0 3 676 236 200 0 13 chr6 12019103 12019179 -137497858 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 676 594 72 117 0 chr6 12019437 12019548 -137497489 - L1_Mus4 LINE L1 0 6636 6513 3 676 549 320 144 15 chr6 12019739 12020002 -137497035 + Tigger7 DNA MER2_type 3 299 -2192 4 676 557 273 155 50 chr6 12020016 12020294 -137496743 + Tigger7 DNA MER2_type 2129 2435 -56 4 676 2204 213 42 43 chr6 12020431 12020961 -137496076 - ORR1D2-int LTR MaLR -841 529 1 4 676 1038 242 111 75 chr6 12020961 12021322 -137495715 - ORR1D2 LTR MaLR 0 421 1 4 676 872 181 0 0 chr6 12023315 12023459 -137493578 - B1_Mur4 SINE Alu -6 144 1 4 676 260 232 12 24 chr6 12024167 12024251 -137492786 + CT-rich Low_complexity Low_complexity 2 84 0 4 676 264 77 0 0 chr6 12025093 12025132 -137491905 + (TAA)n Simple_repeat Simple_repeat 3 41 0 4 676 319 285 175 16 chr6 12025288 12025477 -137491560 - Lx9 LINE L1 -40 7604 7386 4 676 210 71 0 0 chr6 12026082 12026110 -137490927 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 4 676 613 285 169 15 chr6 12026232 12026712 -137490325 - L1MC4a LINE L1 -10 7872 7319 4 676 21 36 0 0 chr6 12028222 12028250 -137488787 + AT_rich Low_complexity Low_complexity 1 28 0 4 676 633 231 99 30 chr6 12028347 12028548 -137488489 - B3 SINE B2 0 216 2 4 676 704 280 24 5 chr6 12028713 12028921 -137488116 + B3 SINE B2 1 212 -4 5 676 1035 230 102 23 chr6 12029244 12029587 -137487450 - ORR1D1 LTR MaLR 0 374 5 5 676 400 287 17 42 chr6 12031340 12031460 -137485577 - B1_Mur1 SINE Alu 0 149 33 5 676 180 77 0 0 chr6 12031599 12031625 -137485412 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 5 676 576 283 49 35 chr6 12031693 12032036 -137485001 - MTD LTR MaLR 0 419 8 5 676 512 285 138 12 chr6 12032234 12032394 -137484643 + B3A SINE B2 1 180 -18 5 676 4884 127 27 18 chr6 12033184 12033970 -137483067 - Lx LINE L1 0 6654 5862 5 676 588 197 79 21 chr6 12034012 12034152 -137482885 - B1_Mur2 SINE Alu -1 148 1 5 676 483 244 110 55 chr6 12034486 12034668 -137482369 - B3A SINE B2 0 198 7 5 676 558 297 31 0 chr6 12035019 12035147 -137481890 + RSINE1 SINE B4 5 136 -29 5 676 309 109 0 0 chr6 12035343 12035398 -137481639 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 6 676 531 326 61 0 chr6 12035420 12035567 -137481470 - B3A SINE B2 -38 160 5 6 676 313 311 12 79 chr6 12035660 12035824 -137481213 - MLT1B LTR MaLR 0 390 238 6 676 619 291 53 22 chr6 12036583 12036811 -137480226 - MT2A LTR ERVL -68 465 231 6 676 309 351 126 19 chr6 12036742 12037003 -137480034 - MTEa LTR MaLR -90 289 1 6 676 342 0 0 0 chr6 12037102 12037140 -137479897 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 676 804 99 309 0 chr6 12037140 12037302 -137479735 + L1_Mur2 LINE L1 4933 5144 -733 6 676 269 277 225 18 chr6 12037337 12037506 -137479531 - L1ME2 LINE L1 -218 5946 5743 6 676 228 278 197 7 chr6 12037645 12037797 -137479240 + MER33 DNA MER1_type 29 209 -115 6 676 1572 80 13 0 chr6 12038650 12038875 -137478162 - L1_Mus3 LINE L1 0 6638 6411 6 676 1435 307 203 67 chr6 12041160 12041717 -137475320 - Lx8 LINE L1 -160 7313 6686 7 676 2343 97 81 103 chr6 12041717 12042210 -137474827 - RLTR45 LTR ERVK 0 482 1 7 676 1435 319 34 29 chr6 12042210 12042589 -137474448 - Lx8 LINE L1 -788 6685 6300 7 676 351 0 0 0 chr6 12042622 12042661 -137474376 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 676 618 231 119 10 chr6 12042791 12043057 -137473980 - L1MB1 LINE L1 -150 6029 5741 7 676 241 192 18 55 chr6 12043082 12043137 -137473900 + MLT2C1 LTR ERVL 511 563 0 7 676 436 274 7 0 chr6 12043275 12043385 -137473652 - PB1D10 SINE Alu -7 110 1 7 676 531 0 0 0 chr6 12043862 12043921 -137473116 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 676 291 222 0 0 chr6 12044740 12044812 -137472225 + L1MB8 LINE L1 6107 6178 0 7 676 329 357 57 7 chr6 12044829 12044970 -137472067 + MER5B DNA MER1_type 31 178 0 7 676 812 260 129 23 chr6 12045860 12046116 -137470921 - ORR1D2 LTR MaLR -86 284 2 7 676 358 244 11 11 chr6 12046239 12046330 -137470707 + ORR1D1 LTR MaLR 5 95 -279 8 676 2210 94 3 16 chr6 12046331 12046654 -137470383 - ORR1A2 LTR MaLR -8 319 1 8 676 762 244 151 20 chr6 12046657 12046908 -137470129 + ORR1D1 LTR MaLR 91 374 0 8 676 1770 148 135 11 chr6 12047064 12047413 -137469624 - ORR1B1 LTR MaLR 0 394 3 8 676 637 144 8 8 chr6 12047534 12047594 -137469443 + polypyrimidine Low_complexity Low_complexity 69 127 0 8 676 2286 61 121 11 chr6 12047594 12047942 -137469095 - RLTR10 LTR ERVK 0 390 5 8 676 637 144 8 8 chr6 12047942 12048007 -137469030 + polypyrimidine Low_complexity Low_complexity 3 68 0 8 676 272 102 20 0 chr6 12048713 12048762 -137468275 + (TA)n Simple_repeat Simple_repeat 2 51 0 8 676 2164 187 27 17 chr6 12049071 12049480 -137467557 - MTC LTR MaLR -8 413 1 8 676 1848 93 0 29 chr6 12050557 12050834 -137466203 + L1Md_F2 LINE L1 6310 6578 -4 8 676 23 33 0 0 chr6 12050924 12050954 -137466083 + AT_rich Low_complexity Low_complexity 1 30 0 8 676 432 211 220 53 chr6 12051037 12051187 -137465850 - Lx9 LINE L1 -170 7474 7300 9 676 21 0 0 0 chr6 12051544 12051565 -137465472 + AT_rich Low_complexity Low_complexity 1 21 0 9 676 583 144 0 53 chr6 12052146 12052336 -137464701 + CT-rich Low_complexity Low_complexity 1 180 0 9 676 545 179 17 0 chr6 12053206 12053323 -137463714 + GA-rich Low_complexity Low_complexity 2 120 0 9 676 403 363 74 55 chr6 12053737 12054008 -137463029 - MER67D LTR ERV1 -97 417 142 9 676 2338 46 12 30 chr6 12054003 12054338 -137462699 + BGLII LTR ERVK 93 421 0 9 676 307 298 58 35 chr6 12054609 12054783 -137462254 - L4 LINE RTE -54 1975 1798 9 676 740 274 143 31 chr6 12055441 12055791 -137461246 - LTR37A LTR ERV1 0 426 38 9 676 1140 67 0 0 chr6 12055911 12056061 -137460976 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 9 676 1299 73 0 11 chr6 12056061 12056240 -137460797 - B2_Mm2 SINE B2 -16 179 3 9 676 3696 60 20 6 chr6 12056962 12057451 -137459586 - LTRIS2 LTR ERV1 0 564 69 1 676 984 225 80 130 chr6 12057656 12058070 -137458967 - RLTR9C LTR ERVK 0 393 1 1 676 441 0 0 0 chr6 12058431 12058480 -137458557 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 677 858 54 0 0 chr6 12059699 12059811 -137457226 + (TTCCC)n Simple_repeat Simple_repeat 2 113 0 1 677 375 78 0 0 chr6 12059811 12059862 -137457175 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1 677 849 272 126 19 chr6 12060110 12060372 -137456665 - B4 SINE B4 -2 290 1 1 677 5882 140 36 15 chr6 12060409 12061669 -137455368 + Lx4A LINE L1 5483 6652 -406 1 677 2546 152 47 2 chr6 12061674 12062096 -137454941 + Lx4A LINE L1 6589 7029 -29 1 677 3773 18 0 0 chr6 12062678 12063074 -137453963 + MTA_Mm LTR MaLR 1 396 0 1 677 9668 39 3 1 chr6 12063075 12064170 -137452867 + MTA_Mm-int LTR MaLR 2 1098 0 1 677 1671 10 0 0 chr6 12064170 12064364 -137452673 + MTA_Mm LTR MaLR 1 194 -202 1 677 4045 47 2 8 chr6 12064364 12064840 -137452197 + L1Md_F2 LINE L1 6107 6579 -3 1 677 21 0 0 0 chr6 12064917 12064938 -137452099 + AT_rich Low_complexity Low_complexity 1 21 0 1 677 1824 32 0 0 chr6 12064961 12065179 -137451858 + MTA_Mm LTR MaLR 179 396 0 1 677 367 255 248 0 chr6 12065636 12065777 -137451260 + MIR SINE MIR 57 232 -30 1 677 189 0 0 0 chr6 12066110 12066131 -137450906 + (A)n Simple_repeat Simple_repeat 1 21 0 1 677 322 185 25 0 chr6 12066670 12066751 -137450286 + GA-rich Low_complexity Low_complexity 3 85 0 1 677 270 106 0 0 chr6 12066754 12066801 -137450236 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 677 536 161 17 0 chr6 12066796 12066914 -137450123 + (CAGAGA)n Simple_repeat Simple_repeat 6 125 0 1 677 423 350 131 29 chr6 12068929 12069173 -137447864 - LTR16E1 LTR ERVL -5 533 265 1 677 1119 281 40 72 chr6 12069384 12069760 -137447277 + MTE2b LTR MaLR 15 378 -1 1 677 192 77 0 0 chr6 12070456 12070482 -137446555 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 677 2299 149 62 11 chr6 12070768 12071140 -137445897 + ORR1B1 LTR MaLR 1 391 -3 1 677 24 91 0 0 chr6 12072342 12072408 -137444629 + AT_rich Low_complexity Low_complexity 1 66 0 1 677 222 37 0 0 chr6 12072793 12072820 -137444217 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 677 662 271 83 36 chr6 12073142 12073418 -137443619 + B4A SINE B4 4 292 0 1 677 1174 228 5 9 chr6 12074632 12074845 -137442192 + B3 SINE B2 2 213 -3 1 677 542 288 101 82 chr6 12075004 12075322 -137441715 - ORR1E LTR MaLR 0 359 36 1 677 22 35 0 0 chr6 12075424 12075453 -137441584 + AT_rich Low_complexity Low_complexity 1 29 0 1 677 200 245 0 0 chr6 12075914 12075960 -137441077 + T-rich Low_complexity Low_complexity 12 57 0 1 677 786 75 0 0 chr6 12075960 12076066 -137440971 + (TCTCC)n Simple_repeat Simple_repeat 3 108 0 1 677 2000 145 141 11 chr6 12076599 12076954 -137440083 + RLTR9D LTR ERVK 2 402 -1 1 677 354 229 171 0 chr6 12077047 12077152 -137439885 - B1F SINE Alu -21 128 6 1 677 24 67 0 0 chr6 12078259 12078304 -137438733 + AT_rich Low_complexity Low_complexity 1 45 0 1 677 198 0 0 0 chr6 12078309 12078331 -137438706 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 677 505 333 22 0 chr6 12078336 12078471 -137438566 - RSINE1 SINE B4 -22 143 6 1 677 4455 159 139 4 chr6 12079458 12080214 -137436823 - RMER13A LTR ERVK -2 858 1 1 677 627 342 6 0 chr6 12081762 12081923 -137435114 + ID_B1 SINE B4 2 163 -61 1 677 316 340 0 0 chr6 12082236 12082330 -137434707 + MLT1H-int LTR MaLR 1263 1356 -53 1 677 662 221 0 0 chr6 12082760 12082882 -137434155 + B1F SINE Alu 18 139 -10 1 677 263 221 34 109 chr6 12082764 12082911 -137434126 - YREP_Mm Unknown Unknown -1517 295 160 1 677 545 288 50 16 chr6 12083320 12083554 -137433483 + MTE2a LTR MaLR 1 219 -200 1 677 513 71 0 0 chr6 12083665 12083735 -137433302 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 1 677 302 323 77 56 chr6 12084588 12084873 -137432164 + HAL1 LINE L1 1172 1462 -1045 1 677 775 271 95 6 chr6 12084886 12085201 -137431836 + L1M2 LINE L1 5451 5793 -504 1 677 322 195 24 0 chr6 12085201 12085283 -137431754 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 677 1191 48 0 70 chr6 12085410 12085424 -137431613 - B1_Mus1 SINE Alu 0 148 139 1 677 221 0 0 33 chr6 12085424 12085454 -137431583 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 677 1191 48 0 70 chr6 12085454 12085597 -137431440 - B1_Mus1 SINE Alu -10 138 2 1 677 234 203 31 0 chr6 12085750 12085814 -137431223 + Lx9 LINE L1 6182 6247 -1397 1 677 276 248 125 29 chr6 12085953 12086057 -137430980 + B4A SINE B4 120 233 -59 1 677 1068 295 56 19 chr6 12086059 12086526 -137430511 + L1M2 LINE L1 4598 5081 -796 1 677 1258 68 0 0 chr6 12086937 12087084 -137429953 + B1_Mus2 SINE Alu 1 147 0 1 677 207 0 0 0 chr6 12087084 12087107 -137429930 + (A)n Simple_repeat Simple_repeat 1 23 0 1 677 22 35 0 0 chr6 12087258 12087287 -137429750 + AT_rich Low_complexity Low_complexity 1 29 0 1 677 775 279 35 45 chr6 12087514 12087890 -137429147 + Lx9 LINE L1 7255 7626 -18 1 677 24 91 0 0 chr6 12088047 12088113 -137428924 + AT_rich Low_complexity Low_complexity 1 66 0 1 677 1256 113 38 5 chr6 12088121 12088307 -137428730 + B2_Mm1t SINE B2 2 193 0 1 677 258 231 83 37 chr6 12088319 12088427 -137428610 - L1MA7 LINE L1 -129 6162 6050 1 677 198 360 22 0 chr6 12088478 12088567 -137428470 + MIRc SINE MIR 68 158 -110 1 677 23 0 0 0 chr6 12089284 12089307 -137427730 + GC_rich Low_complexity Low_complexity 1 23 0 1 677 1195 18 29 31 chr6 12089405 12089854 -137427183 + (TG)n Simple_repeat Simple_repeat 1 447 0 1 677 672 254 0 0 chr6 12089868 12089994 -137427043 - RSINE1 SINE B4 -38 127 2 1 677 261 192 21 113 chr6 12090059 12090200 -137426837 + L1ME4a LINE L1 5993 6120 -4 1 677 236 288 70 42 chr6 12090626 12090764 -137426273 + MIRc SINE MIR 33 176 -92 1 677 24 32 0 0 chr6 12092352 12092383 -137424654 + AT_rich Low_complexity Low_complexity 1 31 0 1 677 374 316 76 42 chr6 12092820 12093150 -137423887 - L1MB3 LINE L1 -2 6181 5841 1 677 2047 127 9 12 chr6 12093161 12093480 -137423557 - ORR1A2 LTR MaLR -9 318 1 1 677 265 125 54 43 chr6 12093510 12093602 -137423435 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 677 601 316 6 6 chr6 12093649 12093818 -137423219 - B4A SINE B4 -16 276 108 1 677 261 0 0 0 chr6 12093889 12093918 -137423119 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 677 2450 86 46 0 chr6 12093927 12094251 -137422786 - L1_Mus3 LINE L1 -4 6634 6296 1 677 189 214 0 0 chr6 12094690 12094732 -137422305 + A-rich Low_complexity Low_complexity 1 42 0 1 677 504 68 84 24 chr6 12095767 12095934 -137421103 + (TA)n Simple_repeat Simple_repeat 2 178 0 1 677 376 248 110 39 chr6 12095935 12096090 -137420947 + MTD LTR MaLR 226 391 -28 1 677 241 277 76 105 chr6 12096454 12096692 -137420345 + RMER17C LTR ERVK 124 354 -56 1 677 683 156 30 52 chr6 12096871 12097006 -137420031 - B1_Mus2 SINE Alu -11 136 5 1 677 399 250 0 0 chr6 12098264 12098380 -137418657 + (CA)n Simple_repeat Simple_repeat 1 116 0 1 677 3394 60 0 0 chr6 12098505 12098904 -137418133 - L1_Mus1 LINE L1 -1 6566 6168 1 677 1021 84 0 72 chr6 12098904 12099027 -137418010 + B1_Mus1 SINE Alu 1 122 -26 1 677 3163 55 10 10 chr6 12099027 12099413 -137417624 + RLTR10 LTR ERVK 1 386 -4 1 677 1021 84 0 72 chr6 12099413 12099442 -137417595 + B1_Mus1 SINE Alu 123 142 -6 1 677 207 0 0 0 chr6 12099444 12099467 -137417570 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 677 1540 180 23 116 chr6 12100152 12100548 -137416489 + ORR1B2 LTR MaLR 1 359 -8 1 677 243 0 0 0 chr6 12100638 12100665 -137416372 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 677 477 237 35 0 chr6 12101430 12101544 -137415493 + B1F2 SINE Alu 31 148 -1 1 677 327 179 0 0 chr6 12101747 12101814 -137415223 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1 677 571 350 13 26 chr6 12102128 12102248 -137414789 - B3A SINE B2 -3 213 98 1 677 3033 106 95 13 chr6 12102248 12102709 -137414328 - Lx LINE L1 0 6654 6156 1 677 571 348 11 22 chr6 12102709 12102805 -137414232 - B3A SINE B2 -99 99 2 1 677 1134 71 43 0 chr6 12102943 12103084 -137413953 - B1_Mus1 SINE Alu 0 148 2 1 677 3598 84 11 0 chr6 12103278 12103720 -137413317 - LTRIS5 LTR ERV1 0 447 1 1 677 1578 212 99 86 chr6 12103965 12104440 -137412597 + RMER16 LTR ERVK 1 481 -52 1 677 31 44 0 0 chr6 12104440 12104485 -137412552 + AT_rich Low_complexity Low_complexity 1 45 0 1 677 912 149 289 44 chr6 12104485 12104779 -137412258 - Lx3B LINE L1 -1 6972 6607 1 677 18469 25 0 0 chr6 12104798 12107581 -137409456 - L1Md_T LINE L1 -1 6581 3798 1 677 505 61 0 0 chr6 12107581 12107647 -137409390 + RMER16 LTR ERVK 468 533 0 1 677 246 192 0 0 chr6 12108958 12109010 -137408027 + A-rich Low_complexity Low_complexity 1 52 0 1 677 1351 51 6 4 chr6 12109399 12109873 -137407164 + (TG)n Simple_repeat Simple_repeat 1 475 0 1 677 1930 250 28 59 chr6 12110387 12110893 -137406144 + Lx6 LINE L1 6945 7434 -26 1 677 734 309 32 0 chr6 12111077 12111297 -137405740 - Lx8 LINE L1 -995 6478 6252 1 677 2937 153 110 23 chr6 12111590 12112198 -137404839 - RMER6C LTR ERVK -29 661 1 1 677 604 209 280 2 chr6 12112198 12112464 -137404573 + ORR1D1 LTR MaLR 7 372 -2 1 677 1661 31 0 0 chr6 12112469 12112660 -137404377 - B2_Mm1a SINE B2 -1 192 2 1 677 523 272 87 81 chr6 12112905 12113077 -137403960 - B4A SINE B4 -14 278 106 1 677 1796 159 94 6 chr6 12113081 12113411 -137403626 - ORR1B2 LTR MaLR -8 359 1 1 677 1281 239 70 44 chr6 12113561 12113903 -137403134 + ORR1D2 LTR MaLR 1 351 -19 1 677 336 160 0 0 chr6 12116104 12116154 -137400883 - Lx LINE L1 -395 6259 6210 1 677 1472 116 40 52 chr6 12116155 12116426 -137400611 + Lx LINE L1 6309 6633 -5 1 677 733 217 29 0 chr6 12118073 12118211 -137398826 + B1_Mus1 SINE Alu 1 142 -6 2 677 486 0 0 0 chr6 12118212 12118266 -137398771 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 677 506 304 132 25 chr6 12118439 12118719 -137398318 + MLT1A LTR MaLR 15 324 -50 2 677 190 27 25 75 chr6 12119362 12119402 -137397635 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 677 216 0 0 0 chr6 12120078 12120102 -137396935 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 677 192 40 0 0 chr6 12121014 12121039 -137395998 + (A)n Simple_repeat Simple_repeat 1 25 0 2 677 23 0 0 0 chr6 12121835 12121858 -137395179 + AT_rich Low_complexity Low_complexity 1 23 0 2 677 961 244 96 10 chr6 12122587 12122901 -137394136 + L1MA6 LINE L1 5959 6299 -1 2 677 32 26 0 0 chr6 12122906 12122945 -137394092 + AT_rich Low_complexity Low_complexity 1 39 0 2 677 269 26 26 0 chr6 12123993 12124031 -137393006 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 677 250 155 86 0 chr6 12124031 12124089 -137392948 - Lx9 LINE L1 -3 7641 7579 2 677 5825 138 67 24 chr6 12124089 12124607 -137392430 + RLTR25A LTR ERVK 1 520 -583 2 677 801 49 0 0 chr6 12124607 12124709 -137392328 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 2 677 5825 138 67 24 chr6 12124709 12125247 -137391790 + RLTR25A LTR ERVK 521 1103 0 2 677 262 257 88 10 chr6 12125252 12125354 -137391683 - Lx9 LINE L1 -67 7577 7468 2 677 194 350 38 0 chr6 12126568 12126648 -137390389 + MIR SINE MIR 180 262 0 2 677 560 280 54 74 chr6 12126798 12127019 -137390018 - MER33 DNA MER1_type -8 316 102 2 677 1853 138 75 17 chr6 12127019 12127366 -137389671 - ORR1B2 LTR MaLR 0 367 1 2 677 560 280 54 74 chr6 12127366 12127441 -137389596 - MER33 DNA MER1_type -223 101 26 2 677 1478 44 5 5 chr6 12127477 12127661 -137389376 - B2_Mm2 SINE B2 -9 186 3 2 677 410 238 46 122 chr6 12128039 12128082 -137388955 - RLTR25B LTR ERVK -91 937 895 2 677 423 0 0 0 chr6 12128082 12128129 -137388908 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 677 194 62 31 0 chr6 12128129 12128160 -137388877 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 677 410 242 45 124 chr6 12128160 12128333 -137388704 - RLTR25B LTR ERVK -133 970 758 2 677 2397 201 76 33 chr6 12128621 12129161 -137387876 - RLTR25B LTR ERVK -175 853 291 2 677 601 316 131 62 chr6 12130077 12130574 -137386463 - MT2A LTR ERVL -2 531 1 2 677 288 337 48 0 chr6 12130861 12130944 -137386093 + RSINE1 SINE B4 73 159 -6 2 677 258 136 0 0 chr6 12130948 12130992 -137386045 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 2 677 261 315 53 23 chr6 12131366 12131499 -137385538 - LTR88b LTR Gypsy? -14 823 687 2 677 409 324 81 47 chr6 12131865 12132225 -137384812 - MLT1A LTR MaLR -2 372 1 2 677 492 99 0 0 chr6 12132283 12132354 -137384683 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 2 677 301 284 50 36 chr6 12132355 12132494 -137384543 - MLT1A LTR MaLR -46 344 204 2 677 416 254 73 15 chr6 12132530 12132666 -137384371 - HAL1-2a_MD LINE L1 -554 2470 2327 2 677 603 283 0 7 chr6 12132699 12132845 -137384192 - MLT1A LTR MaLR -229 145 1 2 677 1734 151 11 66 chr6 12133841 12133918 -137383119 - ORR1A4 LTR MaLR 0 329 272 2 677 1028 103 7 0 chr6 12133918 12134064 -137382973 - B1_Mus1 SINE Alu 0 148 2 2 677 1734 151 11 66 chr6 12134064 12134334 -137382703 - ORR1A4 LTR MaLR -58 271 1 2 677 553 229 25 8 chr6 12134360 12134481 -137382556 - B1F SINE Alu -9 140 24 2 677 441 370 92 41 chr6 12134564 12135054 -137381983 - LTR40a LTR ERVL 0 519 5 2 677 210 37 0 0 chr6 12135061 12135088 -137381949 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 677 1053 100 0 0 chr6 12135088 12135228 -137381809 - B1_Mus1 SINE Alu -8 140 1 2 677 758 104 14 38 chr6 12135488 12135705 -137381332 + CT-rich Low_complexity Low_complexity 1 211 0 2 677 34501 68 2 1 chr6 12136610 12142801 -137374236 - L1Md_F2 LINE L1 0 6582 387 2 677 1964 170 84 0 chr6 12143012 12143359 -137373678 + ORR1C1 LTR MaLR 3 378 0 2 677 304 315 82 0 chr6 12143602 12143748 -137373289 - L1_Rod LINE L1 0 5847 5690 2 677 554 286 102 19 chr6 12143765 12143964 -137373073 - B3A SINE B2 -5 211 2 2 677 4542 38 12 2 chr6 12144334 12144895 -137372142 + L1Md_F3 LINE L1 6018 6584 0 2 677 901 246 97 70 chr6 12145498 12145839 -137371198 + RLTR18 LTR ERVK 33 382 -234 2 677 490 282 30 8 chr6 12145926 12146058 -137370979 - B1F SINE Alu -2 147 13 2 677 391 242 126 14 chr6 12147064 12147286 -137369751 - L1ME2z LINE L1 -108 6336 6090 2 677 1339 126 19 5 chr6 12147818 12148034 -137369003 - Lx LINE L1 -4 6650 6432 2 677 3898 125 0 0 chr6 12148039 12148608 -137368429 - L1_Mm LINE L1 -54 5829 5261 2 677 225 340 32 0 chr6 12148873 12148967 -137368070 + Charlie2b DNA MER1_type 52 148 -2634 2 677 858 218 60 20 chr6 12149154 12149355 -137367682 + B3 SINE B2 8 216 0 2 677 540 222 97 32 chr6 12150185 12150371 -137366666 - B3A SINE B2 0 198 1 2 677 787 351 18 11 chr6 12150558 12150837 -137366200 + B4A SINE B4 1 281 -11 2 677 532 87 0 21 chr6 12150840 12150934 -137366103 + (CA)n Simple_repeat Simple_repeat 1 92 0 2 677 462 245 107 7 chr6 12151189 12151329 -137365708 - L1MEc LINE L1 -2608 3711 3558 2 677 480 262 68 21 chr6 12151366 12151557 -137365480 - L1MEc LINE L1 -6157 243 44 2 677 444 228 85 23 chr6 12154097 12154227 -137362810 - L1_Rod LINE L1 -690 5157 5020 2 677 703 345 110 38 chr6 12154603 12155087 -137361950 + MLT1E2 LTR MaLR 8 561 -93 2 677 210 136 0 0 chr6 12155118 12155162 -137361875 + (TGG)n Simple_repeat Simple_repeat 1 44 0 2 677 341 248 170 104 chr6 12155162 12155432 -137361605 - B4 SINE B4 -3 289 2 2 677 2651 238 60 5 chr6 12155803 12156469 -137360568 - Lx9 LINE L1 -5 7639 6937 2 677 2397 78 0 3 chr6 12156476 12156796 -137360241 - L1_Mus1 LINE L1 0 6567 6249 2 677 4848 73 0 6 chr6 12156796 12157429 -137359608 + L1_Mus1 LINE L1 5606 6234 -333 2 677 350 122 0 35 chr6 12157451 12157536 -137359501 + T-rich Low_complexity Low_complexity 1 82 0 2 677 1120 35 0 0 chr6 12157538 12157680 -137359357 - B1_Mm SINE Alu 0 147 6 2 677 7521 82 12 5 chr6 12157680 12158953 -137358084 - L1_Mus3 LINE L1 -44 6594 5313 2 677 1611 153 0 0 chr6 12158953 12159215 -137357822 + L1_Mus3 LINE L1 5026 5287 -596 2 677 23 0 0 0 chr6 12159470 12159493 -137357544 + AT_rich Low_complexity Low_complexity 1 23 0 2 677 288 0 0 0 chr6 12160743 12160775 -137356262 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 2 677 451 273 96 96 chr6 12160951 12161243 -137355794 + B4A SINE B4 1 292 0 2 677 396 155 0 0 chr6 12161244 12161315 -137355722 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 677 1124 72 67 0 chr6 12161785 12161965 -137355072 + Lx3_Mus LINE L1 6818 7009 0 2 677 542 289 72 0 chr6 12162456 12162608 -137354429 + RSINE1 SINE B4 3 165 0 2 677 330 169 0 0 chr6 12162609 12162674 -137354363 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 677 24 0 0 0 chr6 12162684 12162708 -137354329 + AT_rich Low_complexity Low_complexity 1 24 0 2 677 261 313 49 29 chr6 12162854 12162956 -137354081 + L1MEg1 LINE L1 590 693 -5542 2 677 280 260 13 0 chr6 12162962 12163039 -137353998 + ID4_ SINE ID 3 80 -3 2 677 1071 251 70 34 chr6 12163295 12163689 -137353348 - MTE2a LTR MaLR 0 419 1 2 677 29 70 0 0 chr6 12163767 12163824 -137353213 + AT_rich Low_complexity Low_complexity 1 57 0 2 677 1222 41 0 0 chr6 12164166 12164313 -137352724 - B1_Mm SINE Alu 0 147 1 2 677 323 311 44 0 chr6 12164921 12165011 -137352026 + LTR16A LTR ERVL 21 114 -337 2 677 788 139 205 53 chr6 12165085 12165275 -137351762 + URR1B DNA MER1_type 7 225 0 2 677 1196 182 59 37 chr6 12166380 12166653 -137350384 - RLTR46 LTR ERVK -2 318 40 2 677 4325 121 15 9 chr6 12166661 12167458 -137349579 - IAPEY3-int LTR ERVK 0 7680 6849 2 677 23976 214 20 8 chr6 12167710 12172566 -137344471 - IAPEY3-int LTR ERVK -2234 5446 535 2 677 432 252 34 90 chr6 12172562 12172762 -137344275 - IAPEY3-int LTR ERVK -7337 176 3 2 677 1053 170 143 40 chr6 12172766 12173017 -137344020 - RLTR46 LTR ERVK -2 318 42 2 677 34521 84 14 10 chr6 12173285 12179332 -137337705 - L1Md_F2 LINE L1 0 6582 515 2 677 1118 105 11 34 chr6 12180125 12180303 -137336734 + Lx2A LINE L1 6820 6993 -15 2 677 441 0 0 0 chr6 12180303 12180352 -137336685 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 677 601 318 29 93 chr6 12181565 12181877 -137335160 + B4 SINE B4 1 292 0 2 677 247 260 14 0 chr6 12182980 12183053 -137333984 - Lx6 LINE L1 -26 7434 7361 2 677 281 248 206 39 chr6 12183084 12183239 -137333798 - Lx5 LINE L1 -366 6684 6504 2 677 770 298 150 15 chr6 12183264 12183598 -137333439 - Lx5 LINE L1 -682 6368 5990 2 677 5522 182 36 15 chr6 12183585 12184750 -137332287 + L1_Mur3 LINE L1 2841 4030 -1850 2 677 258 337 31 21 chr6 12185141 12185238 -137331799 - MER67D LTR ERV1 -114 400 303 2 677 661 272 51 42 chr6 12185314 12185529 -137331508 + Lx8 LINE L1 6733 6949 -524 2 677 446 325 91 19 chr6 12185745 12185955 -137331082 + Lx8 LINE L1 6997 7221 -252 2 677 321 26 0 0 chr6 12188262 12188300 -137328737 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 677 228 267 33 16 chr6 12188989 12189050 -137327987 - B4A SINE B4 -161 131 70 2 677 715 289 37 155 chr6 12189150 12189633 -137327404 + MT2A LTR ERVL 1 426 -107 2 84 393 251 56 52 chr6 12189657 12189909 -137327128 + RMER17C LTR ERVK 1 253 -157 2 678 226 50 24 24 chr6 12190753 12190794 -137326243 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 2 678 329 397 7 26 chr6 12191375 12191530 -137325507 + RSINE1 SINE B4 10 161 -4 2 678 451 295 15 107 chr6 12191813 12192075 -137324962 + L1MDa LINE L1 84 321 -6312 2 678 656 304 34 95 chr6 12192118 12192412 -137324625 - MTEa LTR MaLR -31 348 73 2 678 7767 67 6 7 chr6 12192412 12193519 -137323518 + L1_Mus1 LINE L1 5468 6654 0 2 678 359 256 11 11 chr6 12193519 12193606 -137323431 - MTEa LTR MaLR -292 87 1 2 678 1373 165 79 157 chr6 12193901 12194346 -137322691 - RMER17C LTR ERVK 0 410 1 2 678 227 109 65 0 chr6 12194398 12194444 -137322593 + L1_Rod LINE L1 1280 1328 -4519 2 678 2284 254 102 58 chr6 12194458 12195465 -137321572 + L1_Rod LINE L1 1883 2934 -2913 2 678 255 93 0 0 chr6 12195622 12195665 -137321372 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 2 678 1316 272 32 32 chr6 12195940 12196282 -137320755 - MTE2a LTR MaLR -4 375 34 3 678 268 330 22 11 chr6 12196303 12196392 -137320645 - MTE-int LTR MaLR -1 1579 1490 3 678 1152 250 85 41 chr6 12196408 12196750 -137320287 - ORR1E LTR MaLR -2 357 1 3 678 333 0 0 0 chr6 12196909 12196946 -137320091 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 678 307 286 17 87 chr6 12196946 12197061 -137319976 + MLT1A0 LTR MaLR 27 133 -232 3 678 729 188 278 0 chr6 12197064 12197240 -137319797 - URR1B DNA MER1_type 0 225 1 3 678 291 356 42 0 chr6 12197282 12197400 -137319637 + MLT1A0 LTR MaLR 256 378 -30 3 678 1487 261 38 0 chr6 12199448 12199816 -137317221 + RLTR14 LTR ERV1 1 382 0 3 678 551 85 0 12 chr6 12200581 12200627 -137316410 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 3 678 1328 28 17 6 chr6 12200627 12200805 -137316232 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 678 551 85 0 12 chr6 12200805 12200841 -137316196 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 3 678 654 13 0 0 chr6 12200841 12200916 -137316121 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 3 678 719 299 92 33 chr6 12201028 12201301 -137315736 - RMER15 LTR ERVL -14 561 273 3 678 187 272 116 58 chr6 12201557 12201643 -137315394 + MER5A DNA MER1_type 93 183 -6 3 678 487 278 52 8 chr6 12201745 12201879 -137315158 + MER5A DNA MER1_type 42 181 -8 3 678 200 194 71 114 chr6 12201921 12201991 -137315046 - MER5B DNA MER1_type -105 73 7 3 678 530 29 15 0 chr6 12203176 12203244 -137313793 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 678 281 256 44 55 chr6 12204060 12204151 -137312886 + MERVL_2A-int LTR ERVL 4205 4294 -1467 3 678 366 23 0 0 chr6 12204815 12204858 -137312179 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 678 534 43 0 0 chr6 12204858 12204926 -137312111 + (GA)n Simple_repeat Simple_repeat 1 69 0 3 678 415 318 23 0 chr6 12204980 12205109 -137311928 - B4A SINE B4 -8 284 153 3 678 355 252 49 90 chr6 12205547 12205697 -137311340 + MLT1J LTR MaLR 298 516 -94 3 678 304 338 112 34 chr6 12207067 12207300 -137309737 - MLT1D LTR MaLR -213 292 42 3 678 206 32 0 31 chr6 12207368 12207400 -137309637 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 3 678 392 214 0 9 chr6 12207615 12207728 -137309309 + GA-rich Low_complexity Low_complexity 2 113 0 3 678 227 296 84 0 chr6 12208179 12208250 -137308787 - ID4 SINE ID -4 79 3 3 678 26 0 0 0 chr6 12210130 12210156 -137306881 + AT_rich Low_complexity Low_complexity 1 26 0 3 678 740 109 14 0 chr6 12210660 12210807 -137306230 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 3 678 210 136 0 0 chr6 12210947 12210991 -137306046 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 678 198 0 0 0 chr6 12211656 12211678 -137305359 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 3 678 245 273 118 0 chr6 12211679 12211755 -137305282 - PB1D7 SINE Alu -9 111 21 3 678 663 225 0 0 chr6 12211822 12211942 -137305095 + B1_Mus2 SINE Alu 22 141 -6 3 678 378 0 0 0 chr6 12211946 12211988 -137305049 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 678 251 88 0 0 chr6 12213451 12213485 -137303552 + (TTTTC)n Simple_repeat Simple_repeat 5 38 0 3 678 882 156 0 27 chr6 12213485 12213670 -137303367 + CT-rich Low_complexity Low_complexity 1 180 0 3 678 4599 74 0 0 chr6 12214013 12214570 -137302467 - L1Md_T LINE L1 0 6582 6026 3 678 22 35 0 0 chr6 12214873 12214902 -137302135 + AT_rich Low_complexity Low_complexity 1 29 0 3 678 316 194 39 58 chr6 12214952 12214993 -137302044 - Lx9 LINE L1 -41 7603 7565 3 678 2085 126 121 41 chr6 12214993 12215381 -137301656 - MTC LTR MaLR 0 421 3 3 678 316 194 39 58 chr6 12215381 12215443 -137301594 - Lx9 LINE L1 -80 7564 7502 3 678 811 208 32 5 chr6 12215443 12215634 -137301403 - ORR1C1 LTR MaLR -135 232 43 3 678 386 237 79 0 chr6 12215653 12215767 -137301270 - Lx9 LINE L1 -141 7503 7381 3 678 365 309 51 7 chr6 12215783 12215920 -137301117 + Lx9 LINE L1 7222 7364 -280 3 678 229 182 147 29 chr6 12217318 12217386 -137299651 + B4 SINE B4 7 82 -210 3 678 21 36 0 0 chr6 12217955 12217983 -137299054 + AT_rich Low_complexity Low_complexity 1 28 0 3 678 531 276 46 69 chr6 12217984 12218202 -137298835 - Lx6 LINE L1 -27 7433 7221 3 678 2218 272 45 71 chr6 12218190 12218953 -137298084 - Lx5 LINE L1 -249 6801 6059 3 678 1210 220 8 151 chr6 12219260 12219482 -137297555 + L1_Mur3 LINE L1 876 1093 -6619 3 678 360 64 0 0 chr6 12219482 12219529 -137297508 + (CTAA)n Simple_repeat Simple_repeat 3 49 0 3 678 1210 220 8 151 chr6 12219529 12219810 -137297227 + L1_Mur3 LINE L1 1094 1307 -6405 3 678 206 146 24 0 chr6 12220725 12220766 -137296271 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 3 678 943 290 40 57 chr6 12221174 12221595 -137295442 - L1_Rod LINE L1 -52 5795 5382 3 678 396 0 0 0 chr6 12221603 12221647 -137295390 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 3 678 337 228 110 80 chr6 12221647 12221747 -137295290 - PB1D10 SINE Alu -12 105 3 3 678 736 337 81 11 chr6 12221754 12222039 -137294998 + Lx8 LINE L1 7020 7324 -149 3 678 531 270 70 32 chr6 12222052 12222209 -137294828 + B3A SINE B2 20 182 -16 3 678 1828 141 7 6 chr6 12222330 12222671 -137294366 - L1_Mur2 LINE L1 -517 5366 5026 3 678 8001 151 21 8 chr6 12222696 12224144 -137292893 + Lx4A LINE L1 5587 7053 -5 3 678 744 12 0 0 chr6 12224273 12224358 -137292679 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 3 678 1757 141 97 9 chr6 12224452 12224782 -137292255 - RLTR15 LTR ERVK 0 359 1 3 678 1180 112 80 0 chr6 12224782 12224969 -137292068 + ORR1B1 LTR MaLR 151 352 -42 3 678 828 46 0 0 chr6 12224969 12225077 -137291960 - L1_Mus2 LINE L1 -628 5938 5831 3 678 348 384 27 0 chr6 12225085 12225231 -137291806 + LTR16A LTR ERVL 212 361 -90 3 678 216 0 0 0 chr6 12225280 12225304 -137291733 + (A)n Simple_repeat Simple_repeat 1 24 0 3 678 388 39 58 0 chr6 12225304 12225356 -137291681 + ORR1B1 LTR MaLR 340 394 0 3 678 429 260 60 20 chr6 12225435 12225635 -137291402 - L1_Mur3 LINE L1 -425 5455 5248 3 678 350 274 24 12 chr6 12226933 12227018 -137290019 + MLT1D LTR MaLR 36 121 -384 3 678 3178 143 42 13 chr6 12227226 12227677 -137289360 + L1VL4 LINE L1 138 803 -5499 3 678 525 94 0 0 chr6 12227677 12227762 -137289275 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 678 5301 93 5 9 chr6 12227762 12228088 -137288949 + L1VL4 LINE L1 804 1138 -2421 3 678 2327 103 109 19 chr6 12228088 12228463 -137288574 + RLTR9E LTR ERVK 1 409 0 3 678 5301 88 1 8 chr6 12228463 12228996 -137288041 + L1VL4 LINE L1 1139 1666 -1893 3 678 34218 43 13 0 chr6 12229004 12234215 -137282822 + L1Md_T LINE L1 307 5586 -297 3 678 8426 31 0 14 chr6 12234215 12235224 -137281813 + L1Md_T LINE L1 5587 6581 -1 3 678 2909 49 0 0 chr6 12235228 12235574 -137281463 + ORR1A1 LTR MaLR 1 346 0 3 678 19890 152 26 12 chr6 12235575 12237153 -137279884 + L1_Mus4 LINE L1 2017 3638 -2245 3 678 234 0 0 0 chr6 12237153 12237179 -137279858 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 678 19890 152 26 12 chr6 12237179 12239375 -137277662 + L1_Mus4 LINE L1 3639 5852 -31 3 678 3058 38 49 0 chr6 12239375 12239745 -137277292 - RLTR10 LTR ERVK -2 388 1 3 678 19890 98 9 31 chr6 12239745 12240536 -137276501 + L1_Mus4 LINE L1 5853 6633 -3 3 678 313 313 133 40 chr6 12240593 12240702 -137276335 + MLT1D LTR MaLR 313 436 -69 3 678 374 39 19 0 chr6 12240702 12240754 -137276283 + (CAA)n Simple_repeat Simple_repeat 2 54 0 3 678 313 313 133 40 chr6 12240754 12240817 -137276220 + MLT1D LTR MaLR 437 500 -5 3 678 364 111 28 0 chr6 12242195 12242267 -137274770 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 678 419 133 28 9 chr6 12242491 12242597 -137274440 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 3 678 497 359 0 13 chr6 12242605 12242760 -137274277 - RSINE1 SINE B4 -2 163 11 3 678 198 0 0 0 chr6 12243233 12243255 -137273782 + (A)n Simple_repeat Simple_repeat 1 22 0 3 678 312 27 0 0 chr6 12243317 12243354 -137273683 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 3 678 580 26 0 0 chr6 12243360 12243436 -137273601 - L1Md_F2 LINE L1 -14 6568 6493 3 678 197 104 0 59 chr6 12243739 12243790 -137273247 + T-rich Low_complexity Low_complexity 5 52 0 3 678 240 333 0 0 chr6 12243942 12244005 -137273032 + ID4_ SINE ID 2 64 -19 3 678 256 229 0 28 chr6 12244428 12244500 -137272537 - L3b LINE CR1 -362 120 51 3 678 5643 106 9 4 chr6 12244697 12245156 -137271881 - L1_Mus4 LINE L1 -664 5972 5524 3 678 2956 94 12 5 chr6 12245156 12245574 -137271463 - BGLII LTR ERVK 0 421 1 3 678 5643 174 60 27 chr6 12245574 12246430 -137270607 - L1_Mus4 LINE L1 -363 5523 4620 3 678 309 280 48 39 chr6 12246436 12246540 -137270497 + PB1D10 SINE Alu 5 109 -8 3 678 626 150 8 0 chr6 12246574 12246694 -137270343 + GA-rich Low_complexity Low_complexity 3 123 0 3 678 238 76 45 62 chr6 12246872 12246984 -137270053 + (TATAA)n Simple_repeat Simple_repeat 2 111 0 3 678 4011 153 59 6 chr6 12247298 12247976 -137269061 + RMER19A LTR ERVK 1 714 -23 3 678 1285 111 0 0 chr6 12247980 12248179 -137268858 + Lx2 LINE L1 5301 5499 -384 3 678 986 87 23 58 chr6 12249146 12249317 -137267720 + LTRIS2 LTR ERV1 400 564 0 3 678 221 0 0 33 chr6 12249420 12249450 -137267587 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 678 292 104 0 0 chr6 12249799 12249847 -137267190 + RLTR19-int LTR ERVK 141 188 -5218 3 678 309 159 62 31 chr6 12249840 12249905 -137267132 + RLTR19-int LTR ERVK 741 807 -4599 3 678 649 167 25 0 chr6 12249952 12250072 -137266965 + RLTR19-int LTR ERVK 938 1060 -5077 3 678 510 212 0 10 chr6 12250165 12250265 -137266772 + ETnERV2-int LTR ERVK 2506 2604 -4802 3 678 21945 20 0 1 chr6 12250281 12252982 -137264055 - L1Md_T LINE L1 -778 5105 2406 3 678 4460 20 2 2 chr6 12252979 12253528 -137263509 + L1Md_T LINE L1 5038 5586 -297 3 678 8153 35 20 0 chr6 12253528 12254504 -137262533 + L1Md_T LINE L1 5587 6582 0 3 678 3810 148 40 7 chr6 12254527 12255259 -137261778 + ETnERV2-int LTR ERVK 3054 3809 -3597 3 678 2020 135 17 14 chr6 12255547 12255997 -137261040 + Lx2 LINE L1 5493 5956 -1041 3 678 326 354 62 49 chr6 12256748 12257054 -137259983 + L2a LINE L2 3113 3422 -4 3 678 410 157 14 35 chr6 12258151 12258296 -137258741 + (TA)n Simple_repeat Simple_repeat 1 142 0 3 678 357 115 76 13 chr6 12259017 12259096 -137257941 + B2_Mm2 SINE B2 110 193 -2 3 678 22 56 0 0 chr6 12261944 12261980 -137255057 + AT_rich Low_complexity Low_complexity 1 36 0 3 678 21 36 0 0 chr6 12262122 12262150 -137254887 + AT_rich Low_complexity Low_complexity 1 28 0 3 678 404 152 66 9 chr6 12262853 12262959 -137254078 + Lx3A LINE L1 6870 6981 0 3 678 377 206 0 10 chr6 12264274 12264377 -137252660 + CT-rich Low_complexity Low_complexity 4 105 0 3 678 22 0 0 0 chr6 12264718 12264740 -137252297 + AT_rich Low_complexity Low_complexity 1 22 0 4 678 193 250 68 0 chr6 12264858 12264902 -137252135 - MER5B DNA MER1_type -70 108 62 4 678 315 0 0 0 chr6 12264949 12264984 -137252053 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 678 21 57 0 0 chr6 12265321 12265356 -137251681 + AT_rich Low_complexity Low_complexity 1 35 0 4 678 22 35 0 0 chr6 12267498 12267527 -137249510 + AT_rich Low_complexity Low_complexity 1 29 0 4 678 966 70 45 23 chr6 12269170 12269346 -137247691 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 4 678 303 93 0 0 chr6 12269363 12269406 -137247631 + (TCCCC)n Simple_repeat Simple_repeat 3 45 0 4 678 591 233 17 0 chr6 12269434 12269610 -137247427 + T-rich Low_complexity Low_complexity 2 180 0 4 678 2568 141 2 9 chr6 12271239 12271670 -137245367 - Lx LINE L1 0 6654 6227 4 678 243 0 0 0 chr6 12275561 12275588 -137241449 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 678 750 32 0 0 chr6 12275588 12275680 -137241357 + (GA)n Simple_repeat Simple_repeat 2 94 0 4 678 7685 157 14 18 chr6 12275995 12277477 -137239560 + Lx2B LINE L1 5524 6996 -4 4 678 348 275 64 40 chr6 12278181 12278306 -137238731 - L1ME3A LINE L1 -27 6146 6019 4 678 832 316 122 20 chr6 12278856 12279463 -137237574 + Lx8 LINE L1 6753 7421 -52 4 678 714 139 22 0 chr6 12279468 12279605 -137237432 + GA-rich Low_complexity Low_complexity 1 140 0 4 678 1066 225 171 108 chr6 12280453 12280887 -137236150 + RMER6B LTR ERVK 1 461 0 4 678 282 312 8 16 chr6 12282110 12282237 -137234800 + GA-rich Low_complexity Low_complexity 1 126 0 4 678 3440 144 136 65 chr6 12282415 12283016 -137234021 - L1_Mur2 LINE L1 -1473 4404 3723 4 678 1237 101 10 16 chr6 12283016 12283208 -137233829 - B2_Mm1t SINE B2 -1 192 2 4 678 3440 144 136 65 chr6 12283208 12283473 -137233564 - L1_Mur2 LINE L1 -2155 3722 3476 4 678 3517 221 86 27 chr6 12283477 12283952 -137233085 + Lx5 LINE L1 5995 6504 -546 4 678 1742 232 89 78 chr6 12283952 12284556 -137232481 + RMER19C LTR ERVK 1 611 0 4 678 3517 221 86 27 chr6 12284556 12284954 -137232083 + Lx5 LINE L1 6505 6916 -134 4 678 243 0 0 0 chr6 12284954 12284981 -137232056 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 678 504 0 0 0 chr6 12284981 12285036 -137232001 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 678 3517 221 86 27 chr6 12285036 12285152 -137231885 + Lx5 LINE L1 6917 7043 -7 4 678 204 135 0 0 chr6 12285153 12285190 -137231847 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 678 203 0 37 0 chr6 12285309 12285336 -137231701 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 4 678 22 0 0 0 chr6 12286216 12286238 -137230799 + AT_rich Low_complexity Low_complexity 1 22 0 4 678 342 0 0 0 chr6 12289069 12289107 -137227930 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 678 908 120 13 6 chr6 12289259 12289418 -137227619 - L1_Mus3 LINE L1 0 6638 6479 4 678 217 239 0 0 chr6 12289910 12289956 -137227081 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 4 678 1804 201 11 88 chr6 12290979 12291433 -137225604 + MTC LTR MaLR 1 419 -2 4 678 922 268 59 85 chr6 12291586 12292083 -137224954 + MT2A LTR ERVL 1 577 -24 4 678 896 207 113 0 chr6 12292083 12292286 -137224751 - URR1A DNA MER1_type 0 226 1 4 678 839 251 54 99 chr6 12292286 12292302 -137224735 + MT2A LTR ERVL 578 593 -8 4 678 342 61 0 0 chr6 12293522 12293571 -137223466 + (T)n Simple_repeat Simple_repeat 1 49 0 4 678 642 286 22 8 chr6 12293778 12293912 -137223125 + RSINE1 SINE B4 5 140 -25 4 678 417 70 0 0 chr6 12293920 12293977 -137223060 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 678 341 301 0 19 chr6 12295474 12295579 -137221458 + GA-rich Low_complexity Low_complexity 2 104 0 4 678 4603 85 24 2 chr6 12295599 12296232 -137220805 - L1_Mus4 LINE L1 -6 6630 5984 4 678 413 330 63 6 chr6 12297060 12297234 -137219803 + MER3 DNA MER1_type 21 204 -5 4 678 848 300 107 19 chr6 12297403 12297665 -137219372 + B4A SINE B4 8 292 0 4 678 495 198 53 58 chr6 12297777 12297965 -137219072 + Lx9 LINE L1 7451 7637 -7 4 678 220 360 22 34 chr6 12298556 12298645 -137218392 + L2b LINE L2 3288 3375 0 4 678 21 36 0 0 chr6 12299059 12299087 -137217950 + AT_rich Low_complexity Low_complexity 1 28 0 4 678 249 98 0 0 chr6 12299097 12299138 -137217899 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 678 636 148 0 0 chr6 12301373 12301481 -137215556 + (CATATA)n Simple_repeat Simple_repeat 6 113 0 4 678 363 23 0 0 chr6 12303292 12303336 -137213701 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 678 635 298 62 39 chr6 12303447 12303832 -137213205 - L1MB7 LINE L1 -316 5863 5471 4 678 644 291 116 40 chr6 12303854 12304499 -137212538 - L1MB7 LINE L1 -979 5167 4474 4 678 711 125 61 39 chr6 12305018 12305167 -137211870 + MT2C_Mm LTR ERVL 289 492 -1 4 678 22 0 0 0 chr6 12305543 12305565 -137211472 + AT_rich Low_complexity Low_complexity 1 22 0 4 678 362 190 93 23 chr6 12305982 12306068 -137210969 + MTEa LTR MaLR 282 373 -6 4 678 8597 115 23 8 chr6 12306407 12307800 -137209237 + Lx3B LINE L1 5558 6970 -3 4 678 25 0 0 0 chr6 12308043 12308068 -137208969 + AT_rich Low_complexity Low_complexity 1 25 0 4 678 207 69 0 0 chr6 12308682 12308711 -137208326 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 4 678 372 77 0 0 chr6 12309073 12309125 -137207912 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 678 180 0 0 0 chr6 12309125 12309145 -137207892 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 678 255 31 0 0 chr6 12309145 12309176 -137207861 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 678 24 0 0 0 chr6 12309583 12309607 -137207430 + AT_rich Low_complexity Low_complexity 1 24 0 4 678 514 336 21 0 chr6 12309746 12309886 -137207151 + RSINE1 SINE B4 2 144 -21 4 678 183 80 0 0 chr6 12309909 12309934 -137207103 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 4 678 988 171 27 0 chr6 12309961 12310148 -137206889 - B2_Mm2 SINE B2 -1 194 3 4 678 523 229 18 9 chr6 12310499 12310607 -137206430 + MTC LTR MaLR 3 111 -310 4 678 1170 175 20 0 chr6 12310607 12310807 -137206230 - URR1B DNA MER1_type 0 225 22 4 678 185 0 40 0 chr6 12310882 12310907 -137206130 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 678 13262 26 0 0 chr6 12310914 12313219 -137203818 - L1Md_T LINE L1 -1 6581 4277 4 678 37051 43 11 0 chr6 12313219 12319628 -137197409 - L1Md_A LINE L1 0 6582 125 4 678 6626 47 9 2 chr6 12319629 12320489 -137196548 - L1Md_F2 LINE L1 -33 6549 5684 4 84 1888 176 15 6 chr6 12320489 12320821 -137196216 + MTC LTR MaLR 84 418 -3 4 679 183 374 69 56 chr6 12323878 12324110 -137192927 - L2a LINE L2 -1 3425 3191 4 679 3239 46 13 0 chr6 12324469 12324860 -137192177 - MTA_Mm LTR MaLR 0 396 1 4 679 7945 62 43 2 chr6 12324860 12325915 -137191122 - MTA_Mm-int LTR MaLR 0 1098 1 4 679 3173 53 5 10 chr6 12325915 12326313 -137190724 - MTA_Mm LTR MaLR 0 396 1 4 679 655 109 0 0 chr6 12326817 12326909 -137190128 - B2_Mm2 SINE B2 -95 100 9 4 679 3189 129 17 26 chr6 12326909 12327450 -137189587 + Lx3B LINE L1 6434 6969 -4 4 679 225 132 0 0 chr6 12327454 12327492 -137189545 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 4 679 319 301 0 0 chr6 12327774 12327847 -137189190 + ID4 SINE ID 11 83 0 4 679 192 111 0 0 chr6 12330243 12330279 -137186758 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 4 679 1163 95 0 0 chr6 12330279 12330426 -137186611 - B1_Mus2 SINE Alu 0 147 1 4 679 30 77 0 0 chr6 12330546 12330611 -137186426 + AT_rich Low_complexity Low_complexity 1 65 0 4 679 243 0 0 0 chr6 12331553 12331580 -137185457 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 679 1062 298 14 4 chr6 12331598 12331878 -137185159 - B4A SINE B4 -2 290 8 4 679 684 61 0 0 chr6 12331952 12332050 -137184987 + (CA)n Simple_repeat Simple_repeat 2 99 0 4 679 398 215 10 0 chr6 12332093 12332305 -137184732 + (CA)n Simple_repeat Simple_repeat 1 214 0 4 679 1576 97 0 4 chr6 12332725 12332952 -137184085 + L1Md_F2 LINE L1 6347 6572 -10 4 679 2795 135 21 8 chr6 12334140 12334619 -137182418 + Lx2 LINE L1 6513 6997 0 4 679 224 211 0 19 chr6 12335234 12335287 -137181750 + CT-rich Low_complexity Low_complexity 1 52 0 4 679 305 274 71 52 chr6 12336273 12336427 -137180610 + L1MC5 LINE L1 7451 7607 -354 4 679 459 311 60 12 chr6 12340661 12340827 -137176210 + MLT1A LTR MaLR 5 178 -196 4 679 840 169 0 0 chr6 12340856 12341010 -137176027 + (TCCA)n Simple_repeat Simple_repeat 3 156 0 4 679 530 318 32 14 chr6 12341786 12342003 -137175034 - MER58A DNA MER1_type -2 222 2 4 679 441 0 0 0 chr6 12343333 12343382 -137173655 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 4 679 294 29 0 0 chr6 12343681 12343716 -137173321 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 4 679 203 184 0 0 chr6 12343727 12343765 -137173272 + GA-rich Low_complexity Low_complexity 2 39 0 4 679 197 333 18 0 chr6 12344196 12344253 -137172784 - MIR SINE MIR -87 121 64 4 679 1857 178 97 23 chr6 12344292 12344684 -137172353 - MTC LTR MaLR 0 421 1 4 679 267 157 0 0 chr6 12345193 12345244 -137171793 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 679 252 265 15 0 chr6 12349998 12350066 -137166971 + CT-rich Low_complexity Low_complexity 2 70 0 4 679 275 0 0 28 chr6 12353732 12353768 -137163269 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 679 23 0 0 0 chr6 12353815 12353838 -137163199 + AT_rich Low_complexity Low_complexity 1 23 0 4 679 210 323 98 59 chr6 12353916 12354018 -137163019 + PB1D7 SINE Alu 3 108 -12 4 679 1104 95 0 0 chr6 12354161 12354308 -137162729 - B1_Mus2 SINE Alu 0 147 1 4 679 21 36 0 0 chr6 12355626 12355654 -137161383 + AT_rich Low_complexity Low_complexity 1 28 0 4 679 324 0 0 0 chr6 12355775 12355811 -137161226 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 679 351 0 0 0 chr6 12355811 12355849 -137161188 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 679 689 200 31 0 chr6 12355884 12356014 -137161023 - B1F2 SINE Alu 0 149 16 4 679 290 335 59 30 chr6 12359540 12359743 -137157294 - Kanga1b DNA Tc2 -3 776 568 4 679 31 0 0 0 chr6 12359875 12359906 -137157131 + AT_rich Low_complexity Low_complexity 1 31 0 5 679 532 203 113 8 chr6 12359943 12360067 -137156970 - RSINE1 SINE B4 -17 148 12 5 679 576 315 90 0 chr6 12360104 12360282 -137156755 + B3A SINE B2 1 194 -4 5 679 243 369 12 0 chr6 12360276 12360360 -137156677 - Kanga1b DNA Tc2 -542 237 156 4 679 390 368 79 39 chr6 12362232 12362512 -137154525 + B4A SINE B4 2 292 0 5 679 279 54 0 0 chr6 12363933 12363970 -137153067 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 5 679 575 304 66 9 chr6 12363970 12364196 -137152841 - B4 SINE B4 -50 242 4 5 679 255 279 143 43 chr6 12364601 12364859 -137152178 - L1MC4 LINE L1 -372 7670 7387 5 679 744 266 34 111 chr6 12364893 12365100 -137151937 - B3A SINE B2 -4 194 1 5 679 2626 109 47 0 chr6 12367412 12367817 -137149220 + Lx LINE L1 6231 6654 0 5 679 21 0 0 0 chr6 12368720 12368741 -137148296 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 433 311 119 108 chr6 12369196 12369549 -137147488 + ORR1E LTR MaLR 3 359 0 5 679 23 33 0 0 chr6 12370250 12370280 -137146757 + AT_rich Low_complexity Low_complexity 1 30 0 5 679 338 300 41 16 chr6 12370648 12370770 -137146267 + MER67D LTR ERV1 306 430 -84 5 679 1489 271 172 28 chr6 12370789 12371328 -137145709 - Lx6 LINE L1 0 7460 6844 5 679 1866 243 77 20 chr6 12372162 12372657 -137144380 - Lx9 LINE L1 -296 7348 6826 5 679 1130 91 15 56 chr6 12372687 12372885 -137144152 - L1_Mur2 LINE L1 -1578 4299 4110 5 679 4748 218 84 13 chr6 12372921 12374040 -137142997 + Lx5 LINE L1 5850 7047 -3 5 679 369 43 0 0 chr6 12374473 12374520 -137142517 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 679 222 235 19 10 chr6 12375646 12375749 -137141288 + (CATATA)n Simple_repeat Simple_repeat 4 107 0 5 679 450 53 0 0 chr6 12375753 12375810 -137141227 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 679 211 118 29 0 chr6 12375816 12375850 -137141187 - B1_Mm SINE Alu -52 95 61 5 679 6084 51 4 4 chr6 12376297 12377061 -137139976 - L1Md_F2 LINE L1 -2 6580 5817 5 679 32639 75 7 6 chr6 12377062 12382161 -137134876 - L1Md_F2 LINE L1 -174 5709 604 5 679 315 307 114 93 chr6 12382339 12382673 -137134364 - ORR1E LTR MaLR -17 342 2 5 679 1923 59 4 16 chr6 12382722 12382980 -137134057 - L1Md_F2 LINE L1 0 6582 6328 5 679 432 0 0 0 chr6 12383409 12383457 -137133580 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 5 679 522 0 0 0 chr6 12383457 12383514 -137133523 + (TTTTC)n Simple_repeat Simple_repeat 1 58 0 5 679 1074 165 0 6 chr6 12383629 12383806 -137133231 + L1VL4 LINE L1 193 368 -5934 5 679 7447 95 8 8 chr6 12383797 12385092 -137131945 + MusHAL1 LINE L1 512 1802 -1551 5 679 306 0 0 0 chr6 12385565 12385599 -137131438 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 679 280 298 70 9 chr6 12387740 12387855 -137129182 - MIR SINE MIR 0 262 141 5 679 21 71 0 0 chr6 12388744 12388786 -137128251 + AT_rich Low_complexity Low_complexity 1 42 0 5 679 21 0 0 0 chr6 12388955 12388976 -137128061 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 1205 246 129 9 chr6 12389507 12389856 -137127181 - MTD LTR MaLR -28 391 1 5 679 1609 290 126 50 chr6 12389857 12390226 -137126811 + Lx8 LINE L1 6575 6960 -513 5 679 192 77 0 0 chr6 12390226 12390252 -137126785 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 679 1609 290 126 50 chr6 12390252 12390718 -137126319 + Lx8 LINE L1 6961 7473 0 5 679 26 0 0 0 chr6 12390718 12390744 -137126293 + AT_rich Low_complexity Low_complexity 1 26 0 5 679 23 33 0 0 chr6 12391397 12391427 -137125610 + AT_rich Low_complexity Low_complexity 1 30 0 5 679 413 85 12 47 chr6 12391453 12391578 -137125459 + L1Md_F2 LINE L1 6498 6582 0 5 679 22 80 0 0 chr6 12391926 12391976 -137125061 + AT_rich Low_complexity Low_complexity 1 50 0 5 679 7467 76 12 4 chr6 12391976 12392976 -137124061 - L1_Mus1 LINE L1 0 6567 5587 5 679 628 271 143 26 chr6 12393030 12393336 -137123701 + ORR1D2 LTR MaLR 3 343 -16 5 679 6314 109 18 10 chr6 12394343 12395277 -137121760 + Lx LINE L1 5706 6647 -7 5 679 816 268 64 85 chr6 12395511 12395841 -137121196 - ORR1D2 LTR MaLR 0 370 48 5 679 180 0 0 0 chr6 12396141 12396161 -137120876 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 679 240 328 0 0 chr6 12396253 12396311 -137120726 - RSINE1 SINE B4 0 165 108 5 679 244 346 131 73 chr6 12396283 12396420 -137120617 - B4 SINE B4 -12 280 136 5 679 1428 267 35 57 chr6 12399579 12400119 -137116918 - L1_Mur3 LINE L1 -88 5792 5265 5 679 984 235 34 175 chr6 12400145 12400557 -137116480 + ORR1B1 LTR MaLR 41 394 0 5 679 546 267 27 0 chr6 12400557 12400707 -137116330 - L1_Mur3 LINE L1 -679 5201 5048 5 679 3409 324 60 19 chr6 12400707 12402300 -137114737 + Lx8 LINE L1 5782 7440 -33 5 679 1527 265 57 23 chr6 12402459 12402845 -137114192 - MTD LTR MaLR -9 410 12 5 679 200 0 73 24 chr6 12403906 12403947 -137113090 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 5 679 21 0 0 0 chr6 12406151 12406172 -137110865 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 293 206 27 14 chr6 12406587 12406661 -137110376 + ORR1E LTR MaLR 9 83 -276 5 679 243 133 61 82 chr6 12406757 12406806 -137110231 + ORR1E LTR MaLR 273 320 -59 5 679 237 315 64 99 chr6 12407700 12407841 -137109196 + ORR1C1 LTR MaLR 93 228 -150 5 679 193 279 132 88 chr6 12408342 12408456 -137108581 - L2c LINE L2 -14 3373 3255 5 679 209 380 193 19 chr6 12408758 12409069 -137107968 + L2 LINE L2 2672 3036 -383 5 679 211 134 36 24 chr6 12411175 12411259 -137105778 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 679 27 0 0 0 chr6 12412173 12412200 -137104837 + AT_rich Low_complexity Low_complexity 1 27 0 5 679 392 130 0 0 chr6 12412201 12412270 -137104767 - Lx3A LINE L1 -6 6975 6907 5 679 1203 105 12 6 chr6 12412320 12412493 -137104544 + Lx3A LINE L1 6713 6886 -95 5 679 1336 71 38 5 chr6 12412564 12412749 -137104288 - B2_Mm2 SINE B2 -3 192 2 5 679 235 362 19 0 chr6 12413323 12413428 -137103609 + MER68 LTR ERVL 1 107 -456 5 679 4082 115 63 5 chr6 12413446 12414083 -137102954 + Lx2 LINE L1 6324 6997 0 5 679 1238 150 73 0 chr6 12414312 12414334 -137102703 + RMER6C LTR ERVK 437 463 -227 5 679 3465 48 0 0 chr6 12414334 12414754 -137102283 + L1Md_T LINE L1 6163 6582 0 5 679 1238 150 73 0 chr6 12414754 12414965 -137102072 + RMER6C LTR ERVK 464 686 -4 5 679 1183 68 0 0 chr6 12414966 12415113 -137101924 + B1_Mus1 SINE Alu 2 148 0 5 679 320 268 110 66 chr6 12415352 12415488 -137101549 - B1F SINE Alu -1 148 7 5 679 180 261 0 0 chr6 12417607 12417653 -137099384 - MIR3 SINE MIR -7 201 156 5 679 250 314 12 0 chr6 12418332 12418418 -137098619 + Lx8 LINE L1 5820 5906 -1567 5 679 23 33 0 0 chr6 12418586 12418616 -137098421 + AT_rich Low_complexity Low_complexity 1 30 0 5 679 410 0 20 0 chr6 12418678 12418728 -137098309 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 679 447 102 0 0 chr6 12419180 12419239 -137097798 + (GGGA)n Simple_repeat Simple_repeat 1 59 0 5 679 795 133 0 0 chr6 12419239 12419367 -137097670 + (GAAA)n Simple_repeat Simple_repeat 4 131 0 5 679 1339 169 145 0 chr6 12419389 12419644 -137097393 + RMER6D LTR ERVK 26 317 -403 5 679 399 21 0 0 chr6 12419644 12419692 -137097345 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 679 315 208 31 88 chr6 12419692 12419822 -137097215 + RMER6D LTR ERVK 373 494 -262 5 679 1038 105 43 6 chr6 12419901 12420064 -137096973 + B2_Mm2 SINE B2 1 169 -26 5 679 315 49 0 0 chr6 12420135 12420176 -137096861 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 679 1739 339 64 12 chr6 12420176 12420992 -137096045 + Lx8 LINE L1 6265 7122 -351 5 679 7060 79 30 0 chr6 12422762 12424103 -137092934 + L1Md_F LINE L1 586 1958 -3925 5 679 261 0 0 0 chr6 12424103 12424132 -137092905 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 679 7060 69 23 0 chr6 12424132 12424379 -137092658 + L1Md_F LINE L1 1959 2220 -3663 5 679 2305 92 0 0 chr6 12424373 12424699 -137092338 + L1Md_F LINE L1 2777 3102 -2781 5 679 240 0 49 24 chr6 12424940 12424981 -137092056 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 5 679 2695 206 29 22 chr6 12425462 12426096 -137090941 + Lx2B LINE L1 6310 7055 -3 5 679 2288 216 74 83 chr6 12426125 12426431 -137090606 + L1_Rod LINE L1 1430 1732 -4115 5 679 387 73 0 0 chr6 12426431 12426486 -137090551 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 679 2288 216 74 83 chr6 12426486 12426975 -137090062 + L1_Rod LINE L1 1733 2218 -3629 5 679 1176 68 0 0 chr6 12427209 12427355 -137089682 - B1_Mus2 SINE Alu 0 147 2 5 679 264 30 0 0 chr6 12427504 12427537 -137089500 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 679 974 56 26 84 chr6 12427543 12427698 -137089339 - B1_Mus1 SINE Alu -1 147 2 5 679 225 228 106 115 chr6 12427878 12427982 -137089055 + LTR50 LTR ERVL 76 178 -617 5 679 532 289 20 26 chr6 12430610 12430763 -137086274 - MER5B DNA MER1_type -2 176 25 5 679 225 0 0 0 chr6 12431110 12431135 -137085902 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 679 245 296 20 13 chr6 12431233 12431327 -137085710 - B1_Mur4 SINE Alu -8 142 45 5 679 259 309 81 42 chr6 12432775 12433035 -137084002 - L1MEf LINE L1 -4969 1231 962 5 679 1171 74 0 0 chr6 12434222 12434370 -137082667 + B1_Mus1 SINE Alu 1 148 0 5 679 23 0 0 0 chr6 12434370 12434393 -137082644 + AT_rich Low_complexity Low_complexity 1 23 0 5 679 208 312 159 8 chr6 12434737 12434863 -137082174 + MIR SINE MIR 97 241 -21 5 679 24 32 0 0 chr6 12435648 12435679 -137081358 + AT_rich Low_complexity Low_complexity 1 31 0 5 679 624 296 52 42 chr6 12435719 12435931 -137081106 - B3A SINE B2 -2 214 1 5 679 201 132 53 0 chr6 12436050 12436088 -137080949 + (CATTT)n Simple_repeat Simple_repeat 2 41 0 5 679 228 287 163 27 chr6 12436138 12436285 -137080752 - RLTR21 LTR ERVK -332 1240 1074 5 679 528 217 0 0 chr6 12436287 12436379 -137080658 + Lx9 LINE L1 7138 7229 -415 5 679 181 273 0 22 chr6 12437135 12437180 -137079857 + MIRc SINE MIR 40 83 -185 5 679 25 0 0 0 chr6 12438726 12438751 -137078286 + AT_rich Low_complexity Low_complexity 1 25 0 6 679 1635 5 0 15 chr6 12439820 12440017 -137077020 - L1Md_T LINE L1 0 6582 6389 6 679 275 303 0 0 chr6 12440277 12440343 -137076694 + MTEa LTR MaLR 1 66 -313 6 679 186 43 0 0 chr6 12440348 12440371 -137076666 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 6 679 1035 303 26 39 chr6 12440372 12440681 -137076356 + MTEa LTR MaLR 58 362 -17 6 679 4022 140 26 0 chr6 12440682 12441331 -137075706 + Lx2 LINE L1 6331 6996 -1 6 679 1631 284 85 46 chr6 12442510 12443446 -137073591 + L1_Mur3 LINE L1 3596 4627 -1513 6 679 3545 44 2 5 chr6 12444071 12444509 -137072528 + L1_Mus1 LINE L1 6131 6567 0 6 679 1193 62 0 0 chr6 12444513 12444659 -137072378 + B1_Mus2 SINE Alu 2 147 0 6 679 23 33 0 0 chr6 12444659 12444689 -137072348 + AT_rich Low_complexity Low_complexity 1 30 0 6 679 219 36 0 0 chr6 12445214 12445242 -137071795 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 679 261 169 0 0 chr6 12447536 12447595 -137069442 + CT-rich Low_complexity Low_complexity 2 60 0 6 679 921 90 17 17 chr6 12447605 12447785 -137069252 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 679 3771 86 0 4 chr6 12449243 12449756 -137067281 + L1_Mus1 LINE L1 6057 6567 0 6 679 793 184 42 0 chr6 12449960 12450128 -137066909 - Lx9 LINE L1 -661 6983 6809 6 679 943 237 389 27 chr6 12450120 12450405 -137066632 + Lx9 LINE L1 7089 7476 -168 6 679 236 40 59 20 chr6 12450408 12450459 -137066578 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 679 33 25 0 0 chr6 12450598 12450638 -137066399 + AT_rich Low_complexity Low_complexity 1 40 0 6 679 250 24 23 45 chr6 12450771 12450815 -137066222 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 680 228 35 0 0 chr6 12452560 12452589 -137064448 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 680 1197 68 0 0 chr6 12453041 12453188 -137063849 - B1_Mus2 SINE Alu 0 147 1 6 680 205 310 10 94 chr6 12453215 12453311 -137063726 - L2b LINE L2 -10 3365 3278 6 680 245 301 159 24 chr6 12453442 12453568 -137063469 + Cheshire DNA MER1_type 149 291 -2129 6 680 551 317 11 11 chr6 12454680 12454862 -137062175 - B3A SINE B2 -5 193 12 6 680 28 29 0 0 chr6 12454915 12454950 -137062087 + AT_rich Low_complexity Low_complexity 1 35 0 6 680 2338 103 66 7 chr6 12454987 12455376 -137061661 - L1_Mus3 LINE L1 -8 6646 6270 6 680 435 365 98 23 chr6 12456223 12456571 -137060466 - LTR87 LTR ERVL? 0 624 251 6 680 180 0 0 0 chr6 12456581 12456601 -137060436 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 6 680 306 0 0 0 chr6 12457274 12457308 -137059729 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 680 519 45 0 0 chr6 12457607 12457673 -137059364 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 680 5052 117 31 0 chr6 12457962 12458073 -137058964 - Lx2 LINE L1 0 6997 6886 6 680 189 0 0 0 chr6 12458073 12458094 -137058943 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 6 680 5052 117 31 0 chr6 12458094 12458734 -137058303 - Lx2 LINE L1 -112 6885 6225 6 680 1672 275 41 54 chr6 12459251 12459786 -137057251 + Lx6 LINE L1 6912 7439 -21 6 680 264 243 43 51 chr6 12459828 12459945 -137057092 - L1_Rod LINE L1 -293 5554 5439 6 680 1340 335 54 113 chr6 12459962 12461192 -137055845 + Lx8 LINE L1 5597 6759 -714 6 680 318 26 0 0 chr6 12461192 12461231 -137055806 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 680 1340 335 54 113 chr6 12461231 12461376 -137055661 + Lx8 LINE L1 6760 6847 -626 6 680 5149 91 1 27 chr6 12461376 12462125 -137054912 + L1Md_F2 LINE L1 5840 6569 -13 6 680 1340 335 54 113 chr6 12462125 12462550 -137054487 + Lx8 LINE L1 6848 7284 -189 6 680 402 21 0 0 chr6 12462550 12462597 -137054440 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 680 1340 335 54 113 chr6 12462597 12462638 -137054399 + Lx8 LINE L1 7285 7331 -142 6 680 228 35 0 0 chr6 12462640 12462669 -137054368 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 680 444 62 0 0 chr6 12463141 12463205 -137053832 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 680 387 259 0 0 chr6 12463204 12463343 -137053694 + (CA)n Simple_repeat Simple_repeat 1 139 0 6 680 3969 98 39 10 chr6 12463596 12464185 -137052852 + Lx3C LINE L1 6357 6964 -12 6 680 222 62 0 0 chr6 12464185 12464217 -137052820 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 6 680 515 336 138 50 chr6 12464242 12464502 -137052535 + B4 SINE B4 2 284 -8 6 680 198 118 0 0 chr6 12465069 12465103 -137051934 + (TATG)n Simple_repeat Simple_repeat 3 36 0 6 680 201 156 0 0 chr6 12466241 12466273 -137050764 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 680 404 316 88 84 chr6 12466298 12466536 -137050501 + B4 SINE B4 43 281 -11 6 680 25 31 0 0 chr6 12466817 12466849 -137050188 + AT_rich Low_complexity Low_complexity 1 32 0 6 680 335 296 56 56 chr6 12466992 12467153 -137049884 + MER5A1 DNA MER1_type 3 163 -3 6 680 1489 246 118 6 chr6 12470367 12470731 -137046306 + MTD LTR MaLR 1 405 -14 6 680 35372 35 0 0 chr6 12472580 12477866 -137039171 + L1Md_T LINE L1 207 5589 -297 6 680 8945 5 0 1 chr6 12477866 12478863 -137038174 + L1Md_T LINE L1 5590 6585 0 6 680 27 62 0 0 chr6 12479253 12479301 -137037736 + AT_rich Low_complexity Low_complexity 1 48 0 6 680 303 216 39 137 chr6 12480955 12481057 -137035980 - PB1D7 SINE Alu -5 115 24 6 680 563 257 0 62 chr6 12483380 12483525 -137033512 - RSINE1 SINE B4 0 165 30 6 680 1953 149 17 22 chr6 12483534 12483890 -137033147 + ORR1B1 LTR MaLR 41 394 0 6 680 673 289 31 0 chr6 12484224 12484418 -137032619 + B3 SINE B2 5 204 -12 6 680 306 0 0 0 chr6 12484817 12484851 -137032186 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 6 680 182 33 0 62 chr6 12484925 12484957 -137032080 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 680 370 280 48 8 chr6 12484959 12485085 -137031952 - B1F SINE Alu -2 147 17 6 680 218 254 0 0 chr6 12485607 12485662 -137031375 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 680 5212 228 58 20 chr6 12485669 12486939 -137030098 - Lx7 LINE L1 -5 7691 6373 6 680 23 0 0 0 chr6 12487803 12487826 -137029211 + AT_rich Low_complexity Low_complexity 1 23 0 6 680 409 290 32 0 chr6 12488336 12488460 -137028577 + B1F SINE Alu 6 133 -16 6 680 593 319 102 20 chr6 12489060 12489306 -137027731 + B4A SINE B4 27 292 0 6 680 9040 112 35 4 chr6 12489557 12491045 -137025992 + Lx2 LINE L1 5465 6995 -2 6 680 466 326 77 39 chr6 12491114 12491347 -137025690 + Lx8 LINE L1 6386 6627 -846 6 680 188 350 50 8 chr6 12492580 12492701 -137024336 - MIRc SINE MIR -20 248 123 6 680 181 136 123 96 chr6 12493800 12493873 -137023164 - L4 LINE RTE -29 2000 1926 6 680 233 209 44 15 chr6 12494548 12494616 -137022421 + L1MA9 LINE L1 6097 6166 -146 6 680 384 88 0 0 chr6 12496699 12496756 -137020281 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 680 600 311 13 7 chr6 12496881 12497033 -137020004 + B4 SINE B4 132 284 -8 6 680 1119 63 7 0 chr6 12498803 12498946 -137018091 - B1_Mm SINE Alu -1 146 3 6 680 734 144 0 15 chr6 12499067 12499201 -137017836 + CT-rich Low_complexity Low_complexity 3 134 0 6 680 401 357 0 67 chr6 12499277 12499427 -137017610 - RSINE1 SINE B4 -17 148 9 6 680 708 210 35 0 chr6 12499588 12499731 -137017306 - B1_Mur2 SINE Alu -1 148 1 6 680 23 33 0 0 chr6 12500812 12500842 -137016195 + AT_rich Low_complexity Low_complexity 1 30 0 1 680 414 180 8 47 chr6 12502048 12502176 -137014861 + Lx3A LINE L1 6850 6972 -9 2 680 24 0 0 0 chr6 12502186 12502210 -137014827 + AT_rich Low_complexity Low_complexity 1 24 0 3 680 2119 83 23 3 chr6 12502468 12502769 -137014268 - L1_Mus3 LINE L1 -1 6637 6331 4 680 447 19 0 0 chr6 12503227 12503279 -137013758 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 680 210 338 26 0 chr6 12503431 12503508 -137013529 + ID4_ SINE ID 2 80 -3 6 680 199 383 162 0 chr6 12504006 12504160 -137012877 - L4 LINE RTE -468 1561 1383 7 680 330 231 0 0 chr6 12504615 12504680 -137012357 - ID4 SINE ID 0 83 19 8 680 610 248 48 44 chr6 12506584 12506849 -137010188 - Lx6 LINE L1 0 7460 7167 9 680 672 119 0 0 chr6 12506975 12507084 -137009953 + (CAGA)n Simple_repeat Simple_repeat 2 110 0 1 680 471 221 0 0 chr6 12508094 12508216 -137008821 + CT-rich Low_complexity Low_complexity 1 122 0 1 680 212 256 0 0 chr6 12508216 12508259 -137008778 + polypyrimidine Low_complexity Low_complexity 3 45 0 1 680 725 211 0 8 chr6 12508259 12508393 -137008644 - B1_Mur3 SINE Alu -16 133 1 1 680 369 325 56 47 chr6 12508558 12508771 -137008266 - RMER15 LTR ERVL -15 560 346 1 680 545 304 58 18 chr6 12508837 12509008 -137008029 - Lx7 LINE L1 -932 6764 6587 1 680 1512 270 119 22 chr6 12509022 12509567 -137007470 + Lx7 LINE L1 6820 7417 -279 1 680 186 174 0 0 chr6 12509616 12509662 -137007375 + GA-rich Low_complexity Low_complexity 1 46 0 1 680 32 26 0 0 chr6 12509706 12509745 -137007292 + AT_rich Low_complexity Low_complexity 1 39 0 1 680 1199 268 12 6 chr6 12512780 12513099 -137003938 + Lx6 LINE L1 7106 7426 -34 1 680 204 158 0 0 chr6 12513121 12513159 -137003878 + GA-rich Low_complexity Low_complexity 3 40 0 1 680 28 0 0 0 chr6 12513182 12513210 -137003827 + AT_rich Low_complexity Low_complexity 1 28 0 2 680 270 0 0 0 chr6 12513875 12513905 -137003132 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 680 228 224 129 0 chr6 12513910 12513995 -137003042 + Lx6 LINE L1 7346 7441 -19 2 680 30 0 0 0 chr6 12513997 12514027 -137003010 + AT_rich Low_complexity Low_complexity 1 30 0 2 680 518 306 116 66 chr6 12514099 12514349 -137002688 - LTR16E2 LTR ERVL -21 547 285 2 680 915 299 86 30 chr6 12514349 12514687 -137002350 - MTEa LTR MaLR -2 377 21 2 680 581 0 14 0 chr6 12514972 12515041 -137001996 + (TC)n Simple_repeat Simple_repeat 2 71 0 2 680 254 29 29 0 chr6 12515041 12515075 -137001962 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 680 689 296 151 9 chr6 12515159 12515377 -137001660 - B4A SINE B4 -41 251 3 2 680 1171 61 7 0 chr6 12516899 12517046 -136999991 + B1_Mus1 SINE Alu 1 148 0 2 680 405 333 65 11 chr6 12518279 12518540 -136998497 + L1MB4 LINE L1 5893 6167 -13 3 680 432 55 0 0 chr6 12520132 12520187 -136996850 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 680 1481 242 55 22 chr6 12520188 12520552 -136996485 - Lx6 LINE L1 -43 7417 7042 3 680 191 152 22 0 chr6 12522885 12522931 -136994106 + (TAGG)n Simple_repeat Simple_repeat 2 48 0 3 680 669 263 85 5 chr6 12523703 12523902 -136993135 + B3 SINE B2 2 216 0 3 680 27 29 0 0 chr6 12524100 12524134 -136992903 + AT_rich Low_complexity Low_complexity 1 34 0 3 680 580 276 86 0 chr6 12524158 12524321 -136992716 - B3A SINE B2 -16 182 6 3 680 329 395 92 19 chr6 12524486 12524757 -136992280 + L1MEg LINE L1 1 291 -5793 3 680 201 299 0 15 chr6 12526682 12526750 -136990287 + GA-rich Low_complexity Low_complexity 2 68 0 3 680 486 88 0 0 chr6 12526810 12526878 -136990159 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 3 680 3330 61 5 2 chr6 12527347 12527773 -136989264 + L1Md_F3 LINE L1 6157 6583 -1 4 680 786 141 36 155 chr6 12528197 12528416 -136988621 - B2_Mm1t SINE B2 0 193 1 4 680 22 35 0 0 chr6 12532290 12532319 -136984718 + AT_rich Low_complexity Low_complexity 1 29 0 4 680 917 286 113 17 chr6 12533269 12533581 -136983456 + Lx9 LINE L1 7096 7418 -226 4 680 501 47 0 0 chr6 12533581 12533645 -136983392 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 680 917 286 113 17 chr6 12533645 12533809 -136983228 + Lx9 LINE L1 7419 7617 -27 4 680 22 35 0 0 chr6 12533863 12533892 -136983145 + AT_rich Low_complexity Low_complexity 1 29 0 4 680 423 0 0 0 chr6 12534202 12534249 -136982788 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 680 431 184 7 0 chr6 12534249 12534390 -136982647 + GA-rich Low_complexity Low_complexity 1 142 0 4 680 387 141 0 0 chr6 12535710 12535788 -136981249 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 680 249 119 0 0 chr6 12536645 12536687 -136980350 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 680 225 108 0 0 chr6 12537099 12537136 -136979901 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 680 25 31 0 0 chr6 12537151 12537183 -136979854 + AT_rich Low_complexity Low_complexity 1 32 0 5 680 3192 110 0 27 chr6 12537945 12538423 -136978614 - L1_Mus4 LINE L1 -12 6624 6160 5 680 463 321 23 8 chr6 12539082 12539214 -136977823 + RSINE1 SINE B4 16 149 -16 5 680 504 72 0 0 chr6 12539221 12539290 -136977747 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 680 558 274 76 18 chr6 12539994 12540165 -136976872 + B3A SINE B2 2 182 -16 5 680 261 0 0 0 chr6 12540314 12540343 -136976694 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 680 200 333 81 8 chr6 12541649 12541773 -136975264 - MIRb SINE MIR -4 264 132 5 680 355 231 0 0 chr6 12542008 12542073 -136974964 + Lx5 LINE L1 6733 6797 -253 5 680 2966 211 60 19 chr6 12542073 12542816 -136974221 + RMER13B LTR ERVK 1 898 -10 5 680 1086 206 40 20 chr6 12542828 12543081 -136973956 + Lx5 LINE L1 6790 7047 -3 5 680 520 280 30 91 chr6 12543763 12543995 -136973042 - MTEb LTR MaLR -161 218 1 6 680 3672 120 56 25 chr6 12544336 12544942 -136972095 + Lx LINE L1 6030 6654 0 6 680 195 279 74 25 chr6 12545478 12545559 -136971478 - MIRc SINE MIR -32 236 152 6 680 501 68 0 0 chr6 12547026 12547100 -136969937 + (TCTCTG)n Simple_repeat Simple_repeat 2 75 0 6 680 195 42 0 0 chr6 12547100 12547124 -136969913 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 680 3966 72 2 28 chr6 12547166 12547706 -136969331 + L1_Mus1 LINE L1 6038 6563 -4 6 680 931 73 15 0 chr6 12547810 12547947 -136969090 + B1_Mus1 SINE Alu 10 148 0 6 680 342 146 0 0 chr6 12548977 12549059 -136967978 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 6 680 1097 223 73 33 chr6 12549075 12549376 -136967661 - Lx2B LINE L1 -14 6986 6674 6 680 321 26 0 0 chr6 12549478 12549516 -136967521 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 680 488 319 61 65 chr6 12551254 12551485 -136965552 - MLT1E3 LTR MaLR -4 620 391 7 680 471 167 0 95 chr6 12551651 12551777 -136965260 + Lx4B LINE L1 6941 7054 -4 7 680 357 256 59 52 chr6 12551794 12551930 -136965107 - MLT1E3 LTR MaLR -425 199 63 7 680 281 145 0 16 chr6 12555069 12555082 -136961955 + polypurine Low_complexity Low_complexity 1 13 0 7 680 267 31 0 0 chr6 12555082 12555114 -136961923 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 680 281 145 0 16 chr6 12555114 12555163 -136961874 + GA-rich Low_complexity Low_complexity 14 62 0 7 680 228 211 0 0 chr6 12555164 12555240 -136961797 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 680 363 407 72 29 chr6 12555284 12555562 -136961475 - B4 SINE B4 -1 291 2 7 680 27 0 0 0 chr6 12557029 12557056 -136959981 + AT_rich Low_complexity Low_complexity 1 27 0 7 680 1068 96 0 0 chr6 12557343 12557489 -136959548 - B1_Mus2 SINE Alu 0 147 2 7 680 2788 42 80 8 chr6 12557955 12558343 -136958694 - BGLII LTR ERVK 0 421 6 7 680 2061 148 45 11 chr6 12558842 12559197 -136957840 + ORR1B2 LTR MaLR 1 367 0 8 680 457 342 21 21 chr6 12560409 12560597 -136956440 - MER5A DNA MER1_type -1 188 1 8 680 473 235 46 51 chr6 12561323 12561417 -136955620 + RMER17C LTR ERVK 1 89 -321 8 680 948 43 0 0 chr6 12561417 12561534 -136955503 + (TTCTC)n Simple_repeat Simple_repeat 1 117 0 8 680 273 29 0 0 chr6 12561536 12561570 -136955467 + (TCCCC)n Simple_repeat Simple_repeat 1 34 0 8 680 473 235 46 51 chr6 12561570 12561647 -136955390 + RMER17C LTR ERVK 90 173 -237 8 680 672 274 127 83 chr6 12564541 12564903 -136952134 + MTE2a LTR MaLR 1 378 -1 8 680 446 0 19 0 chr6 12564991 12565045 -136951992 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 8 680 29 0 0 0 chr6 12565097 12565126 -136951911 + AT_rich Low_complexity Low_complexity 1 29 0 8 680 1406 54 0 5 chr6 12565323 12565508 -136951529 - L1Md_A LINE L1 -1 6581 6398 8 680 252 0 0 0 chr6 12565917 12565945 -136951092 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 680 378 57 0 0 chr6 12565945 12565997 -136951040 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 680 459 328 73 11 chr6 12566401 12566592 -136950445 + B3 SINE B2 1 203 -13 9 680 1843 195 28 23 chr6 12567272 12567665 -136949372 - Lx4B LINE L1 -4 7054 6660 9 680 455 147 17 17 chr6 12568227 12568345 -136948692 + CT-rich Low_complexity Low_complexity 1 118 0 9 680 410 288 30 22 chr6 12568375 12568510 -136948527 - B1F SINE Alu 0 149 14 9 680 510 77 11 11 chr6 12568579 12568671 -136948366 - L1Md_F2 LINE L1 0 6582 6491 9 680 542 153 35 9 chr6 12570468 12570627 -136946410 + Lx2 LINE L1 6907 6992 -5 9 680 38459 5 0 0 chr6 12570931 12576517 -136940520 + L1Md_A LINE L1 1 5586 -297 9 680 9046 1 0 0 chr6 12576517 12577513 -136939524 + L1Md_A LINE L1 5587 6582 0 9 680 192 77 0 0 chr6 12577539 12577565 -136939472 + (A)n Simple_repeat Simple_repeat 1 26 0 9 680 21 0 0 0 chr6 12577627 12577648 -136939389 + AT_rich Low_complexity Low_complexity 1 21 0 9 680 405 151 0 0 chr6 12577706 12577779 -136939258 - Lx9 LINE L1 0 7644 7572 1 680 554 259 21 14 chr6 12578303 12578444 -136938593 + B1_Mur1 SINE Alu 1 142 -7 1 680 726 60 0 0 chr6 12580240 12580340 -136936697 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 680 217 353 0 0 chr6 12580400 12580451 -136936586 - B3A SINE B2 -67 131 81 1 680 615 60 0 0 chr6 12580570 12580654 -136936383 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 1 680 345 47 0 0 chr6 12580654 12580697 -136936340 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 680 26 30 0 0 chr6 12580911 12580944 -136936093 + AT_rich Low_complexity Low_complexity 1 33 0 1 680 25 0 0 0 chr6 12581020 12581045 -136935992 + AT_rich Low_complexity Low_complexity 1 25 0 1 680 2983 11 0 55 chr6 12581192 12581558 -136935479 + ORR1A0 LTR MaLR 1 346 0 1 680 246 294 110 8 chr6 12581723 12581850 -136935187 + Charlie7 DNA MER1_type 1928 2067 -545 1 680 3144 48 10 2 chr6 12581995 12582388 -136934649 + MTA_Mm LTR MaLR 1 396 0 1 680 23 68 0 0 chr6 12582454 12582498 -136934539 + AT_rich Low_complexity Low_complexity 1 44 0 1 680 353 266 224 29 chr6 12582568 12582742 -136934295 + B3 SINE B2 3 210 -6 1 681 486 0 0 0 chr6 12584395 12584449 -136932588 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 681 387 237 0 10 chr6 12584798 12584896 -136932141 - RMER1C Other Other -2 1340 1244 1 681 201 129 0 0 chr6 12585726 12585757 -136931280 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1 681 22 35 0 0 chr6 12585926 12585955 -136931082 + AT_rich Low_complexity Low_complexity 1 29 0 1 681 1569 251 68 130 chr6 12587280 12587913 -136929124 + RLTR40 LTR ERVK 36 616 -201 1 681 363 23 0 0 chr6 12587913 12587957 -136929080 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 681 1569 251 68 130 chr6 12587957 12588107 -136928930 + RLTR40 LTR ERVK 617 769 -48 1 681 1142 62 7 0 chr6 12588211 12588357 -136928680 + B1_Mm SINE Alu 1 147 0 1 681 264 30 0 0 chr6 12588360 12588393 -136928644 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 1 681 23 0 0 0 chr6 12588844 12588867 -136928170 + AT_rich Low_complexity Low_complexity 1 23 0 1 681 25 31 0 0 chr6 12589004 12589036 -136928001 + AT_rich Low_complexity Low_complexity 1 32 0 1 681 495 150 0 41 chr6 12589705 12589851 -136927186 + (TA)n Simple_repeat Simple_repeat 1 140 0 1 681 234 242 0 0 chr6 12589937 12590003 -136927034 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 681 37831 30 0 1 chr6 12590259 12596890 -136920147 - L1Md_T LINE L1 0 6585 1 1 681 607 78 0 19 chr6 12597318 12597422 -136919615 + L1_Mus1 LINE L1 6464 6565 -2 1 681 705 40 30 0 chr6 12598507 12598608 -136918429 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 681 342 0 0 0 chr6 12598620 12598658 -136918379 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 681 1715 41 27 5 chr6 12600912 12601134 -136915903 - L1Md_F3 LINE L1 0 6584 6358 1 681 403 269 36 22 chr6 12602088 12602225 -136914812 + Tigger13a DNA MER2_type 586 724 -47 1 681 279 314 17 8 chr6 12602291 12602410 -136914627 - L1MD3 LINE L1 -36 7959 7840 1 681 335 348 119 49 chr6 12602500 12602929 -136914108 - L1MC3 LINE L1 -278 7507 7049 1 681 567 149 0 24 chr6 12603422 12603546 -136913491 + GA-rich Low_complexity Low_complexity 3 123 0 1 681 1083 97 11 11 chr6 12603548 12603725 -136913312 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 1 681 212 130 22 0 chr6 12605129 12605175 -136911862 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 681 334 284 99 47 chr6 12605201 12605412 -136911625 + L1M4c LINE L1 752 973 -5411 1 681 703 298 66 0 chr6 12605857 12606055 -136910982 + ID_B1 SINE B4 3 213 -11 1 681 195 42 0 0 chr6 12606536 12606560 -136910477 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 681 608 377 46 41 chr6 12606678 12607137 -136909900 - LTR16B1 LTR ERVL -10 470 10 1 681 2178 163 49 65 chr6 12607554 12608000 -136909037 + RLTR28 LTR ERVL 83 521 -3 1 681 902 103 0 14 chr6 12608324 12608472 -136908565 - L1Md_F2 LINE L1 -2 6580 6435 1 681 1201 88 38 6 chr6 12608647 12608830 -136908207 + B2_Mm2 SINE B2 2 190 -5 1 681 239 349 103 54 chr6 12609810 12610052 -136906985 - L2c LINE L2 -470 2949 2696 1 681 229 421 31 8 chr6 12610027 12610154 -136906883 - L2c LINE L2 -157 3230 3101 1 681 495 266 57 29 chr6 12611269 12611478 -136905559 - B3 SINE B2 0 216 2 1 681 23 0 0 0 chr6 12611854 12611877 -136905160 + AT_rich Low_complexity Low_complexity 1 23 0 1 681 26 88 0 0 chr6 12611910 12611978 -136905059 + AT_rich Low_complexity Low_complexity 1 68 0 1 681 351 302 86 6 chr6 12612762 12612882 -136904155 - B3A SINE B2 -56 142 25 1 681 244 250 0 14 chr6 12612920 12612993 -136904044 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 681 347 302 33 16 chr6 12614336 12614457 -136902580 + L1M2 LINE L1 5173 5295 -848 1 681 269 81 0 0 chr6 12614462 12614499 -136902538 + RMER19C LTR ERVK 3 39 -572 1 681 1130 75 0 13 chr6 12614868 12615017 -136902020 + B1_Mm SINE Alu 1 147 0 1 681 191 114 0 28 chr6 12615025 12615061 -136901976 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 1 681 1494 112 30 30 chr6 12615261 12615527 -136901510 - L1_Mus3 LINE L1 -8 6630 6365 1 681 16206 138 6 2 chr6 12615527 12618456 -136898581 - L1VL4 LINE L1 -1888 3995 1054 1 681 686 141 0 40 chr6 12618454 12618580 -136898457 - L1VL2 LINE L1 -5892 443 323 1 681 7215 79 20 8 chr6 12618966 12620269 -136896768 + L1_Mus2 LINE L1 5243 6565 -1 1 681 255 31 0 0 chr6 12620340 12620372 -136896665 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 681 234 0 0 0 chr6 12620372 12620398 -136896639 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 681 250 287 228 8 chr6 12620564 12620687 -136896350 - RSINE1 SINE B4 -13 152 3 1 681 32074 3 2 0 chr6 12621578 12626233 -136890804 + L1Md_A LINE L1 214 4876 -1007 1 681 16370 4 0 0 chr6 12626235 12628763 -136888274 - L1Md_A LINE L1 0 6582 4055 1 681 6457 7 0 0 chr6 12628764 12629489 -136887548 + L1Md_A LINE L1 4862 5586 -297 1 681 8966 2 1 0 chr6 12629489 12630562 -136886475 + L1Md_A LINE L1 5587 6582 0 1 681 21 71 0 0 chr6 12630618 12630660 -136886377 + AT_rich Low_complexity Low_complexity 1 42 0 1 681 304 280 0 0 chr6 12631468 12631561 -136885476 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 681 21 0 0 0 chr6 12631654 12631675 -136885362 + AT_rich Low_complexity Low_complexity 1 21 0 1 681 306 0 0 0 chr6 12634602 12634636 -136882401 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 681 262 266 31 0 chr6 12634738 12634802 -136882235 + L2 LINE L2 2815 2880 -539 1 681 204 292 0 0 chr6 12635407 12635455 -136881582 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 681 2963 255 30 46 chr6 12635648 12636672 -136880365 + Lx9 LINE L1 4854 5839 -8 1 681 280 328 77 35 chr6 12636893 12637152 -136879885 + RLTR15 LTR ERVK 48 317 -42 1 681 1030 299 78 26 chr6 12637522 12637985 -136879052 + Lx9 LINE L1 6241 6727 -917 1 681 219 69 0 0 chr6 12638094 12638123 -136878914 + (T)n Simple_repeat Simple_repeat 1 29 0 1 681 636 12 0 0 chr6 12638161 12638241 -136878796 - L1Md_T LINE L1 0 6582 6503 1 681 21 36 0 0 chr6 12638383 12638411 -136878626 + AT_rich Low_complexity Low_complexity 1 28 0 1 681 2353 83 33 0 chr6 12638488 12638825 -136878212 - L1_Mus3 LINE L1 -7 6631 6284 1 681 415 279 210 20 chr6 12641054 12641363 -136875674 + L1MA10 LINE L1 5796 6173 -161 1 681 327 49 0 0 chr6 12641363 12641404 -136875633 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 681 415 279 210 20 chr6 12641404 12641485 -136875552 + L1MA10 LINE L1 6174 6259 -75 1 681 2078 88 31 0 chr6 12641767 12642061 -136874976 + L1_Mus1 LINE L1 6265 6567 0 1 681 294 304 191 13 chr6 12642066 12642296 -136874741 + L1MB3 LINE L1 5603 5873 -310 1 681 768 52 0 0 chr6 12642296 12642393 -136874644 + (GGAA)n Simple_repeat Simple_repeat 3 99 0 1 681 249 314 88 25 chr6 12642397 12642611 -136874426 + L1MB3 LINE L1 5893 6121 -62 1 681 393 75 0 0 chr6 12642827 12642880 -136874157 + (TTG)n Simple_repeat Simple_repeat 2 54 0 1 681 1181 265 96 3 chr6 12642880 12643213 -136873824 - MTE2b LTR MaLR -15 364 1 1 681 317 287 61 156 chr6 12643219 12643450 -136873587 + RSINE1 SINE B4 66 292 0 1 681 302 259 12 12 chr6 12643450 12643532 -136873505 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 681 21 0 0 0 chr6 12644947 12644968 -136872069 + AT_rich Low_complexity Low_complexity 1 21 0 1 681 224 279 0 0 chr6 12645109 12645170 -136871867 + A-rich Low_complexity Low_complexity 3 63 0 1 681 528 16 0 0 chr6 12645234 12645295 -136871742 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 681 420 282 34 8 chr6 12645804 12645922 -136871115 - B3 SINE B2 -5 211 91 1 681 1479 189 208 95 chr6 12645985 12646510 -136870527 + RMER4B LTR ERVK 1 584 -1 1 681 23 78 0 0 chr6 12647134 12647185 -136869852 + AT_rich Low_complexity Low_complexity 1 51 0 1 681 243 114 0 0 chr6 12647201 12647245 -136869792 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 681 298 188 16 49 chr6 12647600 12647723 -136869314 + CT-rich Low_complexity Low_complexity 6 124 0 1 681 30 89 0 0 chr6 12648076 12648155 -136868882 + AT_rich Low_complexity Low_complexity 1 79 0 1 681 276 271 106 0 chr6 12648391 12648476 -136868561 - MLT1A LTR MaLR 0 374 281 1 681 643 177 26 0 chr6 12648554 12648667 -136868370 - ORR1C2 LTR MaLR 0 384 269 1 681 553 254 14 40 chr6 12648670 12648818 -136868219 - ORR1C2 LTR MaLR -238 146 3 1 681 4712 224 74 80 chr6 12648820 12650198 -136866839 - ORR1C2-int LTR MaLR 0 1370 1 1 681 1617 151 30 194 chr6 12650198 12650657 -136866380 - ORR1C2 LTR MaLR 0 384 1 1 681 285 296 119 25 chr6 12650727 12650845 -136866192 - MLT1A LTR MaLR -235 139 11 1 681 861 361 66 20 chr6 12650859 12651297 -136865740 + MLT1F LTR MaLR 60 517 -31 1 681 382 359 40 35 chr6 12651757 12651956 -136865081 - MER20 DNA MER1_type 0 219 20 1 681 204 274 0 0 chr6 12652268 12652319 -136864718 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 681 251 50 50 0 chr6 12652662 12652702 -136864335 + (CAGAGA)n Simple_repeat Simple_repeat 2 43 0 1 681 492 292 116 19 chr6 12652892 12653108 -136863929 - LTR16C LTR ERVL 0 489 253 1 681 442 316 8 25 chr6 12653345 12653453 -136863584 + PB1D7 SINE Alu 1 107 -13 1 681 213 39 0 0 chr6 12653453 12653479 -136863558 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 2 681 442 316 8 25 chr6 12653479 12653490 -136863547 + PB1D7 SINE Alu 108 118 -2 1 681 29 60 0 0 chr6 12653660 12653710 -136863327 + AT_rich Low_complexity Low_complexity 1 50 0 2 681 378 74 0 0 chr6 12653814 12653868 -136863169 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 681 279 430 82 29 chr6 12653969 12654213 -136862824 - LTR16C LTR ERVL -232 257 1 1 681 402 272 168 82 chr6 12654286 12654614 -136862423 + ORR1E LTR MaLR 1 356 -3 2 681 670 204 38 52 chr6 12654650 12654839 -136862198 - RLTR20B3 LTR ERVK -342 235 37 2 681 3124 166 106 14 chr6 12655253 12655584 -136861453 - RMER6D LTR ERVK 0 720 380 2 681 484 15 0 30 chr6 12655584 12655651 -136861386 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 681 3124 166 106 14 chr6 12655651 12655978 -136861059 - RMER6D LTR ERVK -341 379 1 2 681 201 74 0 0 chr6 12656780 12656807 -136860230 + (A)n Simple_repeat Simple_repeat 1 27 0 2 681 1199 273 27 60 chr6 12657353 12657723 -136859314 - ORR1D1 LTR MaLR -1 373 16 2 681 6906 98 32 9 chr6 12657725 12659172 -136857865 + L1_Mus3 LINE L1 5176 6638 0 2 681 349 281 89 18 chr6 12659355 12659695 -136857342 + L1M2 LINE L1 4874 5261 -885 2 681 868 270 134 19 chr6 12659695 12660069 -136856968 - MTD LTR MaLR 0 419 3 2 681 469 289 88 50 chr6 12660069 12660211 -136856826 + L1M2 LINE L1 5262 5404 -940 2 681 1871 110 113 3 chr6 12660211 12660504 -136856533 - ORR1A2 LTR MaLR -2 325 1 2 681 469 287 85 51 chr6 12660504 12660721 -136856316 + L1M2 LINE L1 5405 5629 -715 2 681 984 111 0 0 chr6 12661054 12661207 -136855830 + (TG)n Simple_repeat Simple_repeat 2 154 0 2 681 542 335 36 44 chr6 12661217 12661492 -136855545 - B4 SINE B4 -18 274 2 2 681 861 103 0 0 chr6 12661510 12661636 -136855401 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 2 681 592 36 24 0 chr6 12661696 12661779 -136855258 + (GA)n Simple_repeat Simple_repeat 1 85 0 2 681 437 163 0 11 chr6 12662327 12662420 -136854617 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 681 258 320 203 18 chr6 12662562 12662974 -136854063 - L2a LINE L2 -113 3313 2833 2 681 1919 180 56 13 chr6 12663865 12664259 -136852778 - MTC LTR MaLR -8 413 3 2 681 787 128 14 26 chr6 12664732 12665466 -136851571 + (CAGAGA)n Simple_repeat Simple_repeat 1 724 0 2 681 411 283 61 0 chr6 12665477 12665576 -136851461 - RSINE1 SINE B4 -6 159 55 2 681 1595 282 70 29 chr6 12666071 12666626 -136850411 + RMER1C Other Other 486 1063 -279 2 681 189 74 0 0 chr6 12666709 12666736 -136850301 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 681 285 29 0 0 chr6 12666797 12666831 -136850206 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 681 488 229 21 0 chr6 12666918 12667014 -136850023 + RMER1C Other Other 1096 1193 -149 2 681 522 180 0 0 chr6 12667023 12667123 -136849914 + (TA)n Simple_repeat Simple_repeat 2 101 0 2 681 395 250 0 0 chr6 12667139 12667231 -136849806 + RMER1C Other Other 1250 1341 -1 2 681 35 0 0 0 chr6 12667438 12667473 -136849564 + AT_rich Low_complexity Low_complexity 1 35 0 2 681 941 54 6 140 chr6 12667473 12667556 -136849481 - B1_Mus1 SINE Alu 0 148 88 2 681 4188 52 7 7 chr6 12667556 12668095 -136848942 - L1Md_F2 LINE L1 0 6582 6044 2 681 941 54 6 140 chr6 12668095 12668182 -136848855 - B1_Mus1 SINE Alu -61 87 1 2 681 1565 264 33 0 chr6 12668929 12669289 -136847748 - MTD LTR MaLR -47 372 1 2 681 27 0 0 0 chr6 12669351 12669378 -136847659 + AT_rich Low_complexity Low_complexity 1 27 0 2 681 288 288 0 0 chr6 12669820 12669893 -136847144 + ID4_ SINE ID 4 76 -7 2 681 5352 60 0 1 chr6 12670021 12670701 -136846336 + L1Md_F2 LINE L1 5904 6582 0 2 681 513 208 138 20 chr6 12671021 12671173 -136845864 + RLTR14 LTR ERV1 3 172 -210 2 681 180 97 0 0 chr6 12671227 12671258 -136845779 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2 681 2095 207 32 20 chr6 12671333 12671776 -136845261 + RLTR20B3 LTR ERVK 127 574 -3 2 681 606 49 0 0 chr6 12671789 12671871 -136845166 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 681 719 201 22 0 chr6 12671872 12672011 -136845026 + RLTR14 LTR ERV1 241 382 0 2 681 619 177 143 23 chr6 12672087 12672220 -136844817 + B1_Mur4 SINE Alu 2 150 0 2 681 237 146 0 0 chr6 12673006 12673047 -136843990 - L1_Mm LINE L1 -384 5499 5459 2 681 4260 139 42 15 chr6 12673047 12673764 -136843273 + Lx3B LINE L1 6238 6973 0 2 681 180 0 0 0 chr6 12674617 12674637 -136842400 + (A)n Simple_repeat Simple_repeat 1 20 0 2 681 365 266 25 8 chr6 12675181 12675328 -136841709 + L1MB1 LINE L1 5912 6062 -106 2 681 1239 91 0 0 chr6 12675621 12675796 -136841241 + (GAGAA)n Simple_repeat Simple_repeat 5 179 0 2 681 1214 97 3 0 chr6 12675798 12676110 -136840927 + (GGGAA)n Simple_repeat Simple_repeat 1 312 0 2 681 221 288 97 18 chr6 12676223 12676336 -136840701 + BC1_Mm scRNA scRNA 5 126 -26 2 681 206 345 65 11 chr6 12676600 12676748 -136840289 - MIRm SINE MIR -95 173 19 2 681 214 206 0 29 chr6 12677053 12677123 -136839914 + CT-rich Low_complexity Low_complexity 5 72 0 2 681 447 19 0 0 chr6 12677335 12677387 -136839650 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 681 432 51 0 0 chr6 12677387 12677446 -136839591 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 681 1659 121 102 18 chr6 12677963 12678248 -136838789 - Lx LINE L1 -2 6652 6344 2 681 26 0 0 0 chr6 12679735 12679761 -136837276 + AT_rich Low_complexity Low_complexity 1 26 0 2 681 2453 180 54 93 chr6 12680030 12680748 -136836289 + RMER6C LTR ERVK 1 690 0 2 681 294 256 16 23 chr6 12681988 12682116 -136834921 + (TA)n Simple_repeat Simple_repeat 1 127 0 2 681 195 250 52 134 chr6 12682833 12682967 -136834070 - L2c LINE L2 -8 3379 3257 2 681 297 239 78 26 chr6 12684686 12684802 -136832235 + Tigger14a DNA MER2_type 153 274 -50 2 681 368 252 155 33 chr6 12686284 12686497 -136830540 - Lx9 LINE L1 0 7644 7406 2 681 245 229 0 20 chr6 12686852 12686901 -136830136 + RMER15 LTR ERVL 84 131 -444 2 681 338 269 146 0 chr6 12686959 12687089 -136829948 + L1M5 LINE L1 5650 5798 -366 2 681 317 308 40 29 chr6 12687312 12687486 -136829551 + L1MB8 LINE L1 6002 6177 -1 2 681 252 0 0 0 chr6 12688078 12688106 -136828931 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 2 681 1125 81 17 6 chr6 12688106 12688280 -136828757 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 2 681 503 170 0 10 chr6 12688280 12688381 -136828656 + GA-rich Low_complexity Low_complexity 4 103 0 2 681 1080 96 6 11 chr6 12688381 12688560 -136828477 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 2 681 1144 240 34 22 chr6 12688560 12688884 -136828153 + L1_Rod LINE L1 4991 5318 -529 2 681 1174 259 159 7 chr6 12688873 12689332 -136827705 + Lx9 LINE L1 7115 7643 -1 2 681 3803 82 35 2 chr6 12689534 12690069 -136826968 - L1_Mus3 LINE L1 -2 6636 6084 2 681 236 340 110 71 chr6 12690189 12690282 -136826755 - RSINE1 SINE B4 0 165 78 2 681 1674 103 15 210 chr6 12690282 12690687 -136826350 - ORR1A2 LTR MaLR 0 327 2 2 681 236 340 110 71 chr6 12690687 12690748 -136826289 - RSINE1 SINE B4 -88 77 5 2 681 224 330 0 65 chr6 12690781 12690888 -136826149 - PB1D10 SINE Alu -7 110 11 2 681 621 225 0 8 chr6 12692898 12693019 -136824018 + 5S rRNA rRNA 1 120 -1 2 681 447 167 73 122 chr6 12693019 12693142 -136823895 + PB1D9 SINE Alu 2 118 -2 2 681 26 0 0 0 chr6 12693259 12693285 -136823752 + AT_rich Low_complexity Low_complexity 1 26 0 2 681 506 91 0 13 chr6 12696738 12696816 -136820221 + (TCTCCC)n Simple_repeat Simple_repeat 1 77 0 2 681 279 0 0 0 chr6 12698348 12698379 -136818658 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 681 261 0 0 0 chr6 12698379 12698407 -136818630 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 681 206 214 0 0 chr6 12698866 12698908 -136818129 + (CAG)n Simple_repeat Simple_repeat 1 42 0 2 681 441 0 0 0 chr6 12701246 12701295 -136815742 + (TAA)n Simple_repeat Simple_repeat 1 49 0 2 681 441 0 0 0 chr6 12702130 12702179 -136814858 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2 681 21 0 0 0 chr6 12702262 12702283 -136814754 + AT_rich Low_complexity Low_complexity 1 21 0 2 681 27 29 0 0 chr6 12702294 12702328 -136814709 + AT_rich Low_complexity Low_complexity 1 34 0 2 681 21 36 0 0 chr6 12702342 12702370 -136814667 + AT_rich Low_complexity Low_complexity 1 28 0 2 681 1448 172 121 24 chr6 12702835 12703132 -136813905 + ORR1A3 LTR MaLR 1 326 0 2 681 1094 81 0 13 chr6 12703398 12703548 -136813489 + B1_Mus1 SINE Alu 1 148 0 2 681 285 319 123 19 chr6 12704263 12704563 -136812474 - L1M4b LINE L1 -1529 5477 5154 2 681 964 288 108 48 chr6 12704588 12705107 -136811930 - Lx8 LINE L1 -1606 4534 4037 2 681 207 0 0 0 chr6 12705107 12705130 -136811907 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 2 681 964 296 126 42 chr6 12705130 12705533 -136811504 - Lx8 LINE L1 -2104 4036 3595 2 681 229 328 91 28 chr6 12705873 12706075 -136810962 - L1M4b LINE L1 -4532 2570 2351 2 681 384 40 0 0 chr6 12706075 12706125 -136810912 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 681 313 295 50 8 chr6 12706125 12706283 -136810754 - L1M4b LINE L1 -4752 2350 2075 2 681 231 272 110 46 chr6 12706303 12706591 -136810446 - L1M4b LINE L1 -4880 2024 1685 2 681 3054 185 62 41 chr6 12706924 12707628 -136809409 + RMER6D LTR ERVK 1 719 -1 2 681 24 0 0 0 chr6 12708066 12708090 -136808947 + AT_rich Low_complexity Low_complexity 1 24 0 2 681 21 0 0 0 chr6 12708531 12708552 -136808485 + AT_rich Low_complexity Low_complexity 1 21 0 2 681 188 402 0 0 chr6 12709115 12709212 -136807825 - L3 LINE CR1 -105 4384 4288 2 681 22 35 0 0 chr6 12710280 12710309 -136806728 + AT_rich Low_complexity Low_complexity 1 29 0 2 681 180 194 70 127 chr6 12710480 12710551 -136806486 - L2b LINE L2 -1 3374 3308 2 681 1226 72 0 0 chr6 12710619 12710786 -136806251 + L1_Mus1 LINE L1 6401 6567 0 2 681 207 25 0 70 chr6 12710822 12710865 -136806172 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2 681 1337 171 8 0 chr6 12711367 12711606 -136805431 - L1_Mur2 LINE L1 -1419 4458 4218 2 681 821 141 28 34 chr6 12711606 12711782 -136805255 + Lx2B LINE L1 6807 6981 -19 2 681 552 55 0 0 chr6 12711783 12711856 -136805181 + B1_Mus2 SINE Alu 75 147 0 2 681 546 152 0 0 chr6 12711884 12711963 -136805074 + MT2A LTR ERVL 5 83 -450 2 681 325 322 0 30 chr6 12711963 12711994 -136805043 + MTE2b LTR MaLR 5 111 -268 2 681 991 123 7 0 chr6 12711999 12712153 -136804884 - MERVL_2A-int LTR ERVL -249 5512 5358 2 681 1926 160 6 3 chr6 12712148 12712467 -136804570 - MERVL_2A-int LTR ERVL -5420 341 22 2 681 350 214 102 79 chr6 12712469 12712596 -136804441 + ORR1A3-int LTR MaLR 510 639 -1324 3 681 310 146 18 0 chr6 12712596 12712651 -136804386 + MERVL_2A-int LTR ERVL 5706 5761 0 3 681 1109 225 182 135 chr6 12712656 12712893 -136804144 + MT2A LTR ERVL 6 178 -355 3 681 402 21 0 0 chr6 12712893 12712940 -136804097 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 681 1109 225 182 135 chr6 12712940 12713206 -136803831 + MT2A LTR ERVL 179 533 0 3 681 264 59 0 0 chr6 12713427 12713461 -136803576 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 3 681 1191 41 7 0 chr6 12713517 12713663 -136803374 + B1_Mm SINE Alu 1 147 0 3 682 656 313 45 26 chr6 12716916 12717185 -136799852 - B4A SINE B4 -18 274 1 3 682 372 43 0 0 chr6 12717749 12717795 -136799242 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 682 422 316 36 7 chr6 12717795 12717935 -136799102 - B3A SINE B2 -47 151 8 3 682 3617 98 0 16 chr6 12717973 12718026 -136799011 - L1_Mus4 LINE L1 -12 6624 6578 3 682 3764 25 5 0 chr6 12718026 12718460 -136798577 - RLTR10C LTR ERVK 0 436 1 3 682 3617 98 0 16 chr6 12718460 12718922 -136798115 - L1_Mus4 LINE L1 -59 6577 6117 3 682 21 36 0 0 chr6 12719307 12719335 -136797702 + AT_rich Low_complexity Low_complexity 1 28 0 3 682 4712 64 5 5 chr6 12719946 12720561 -136796476 - L1Md_F2 LINE L1 -3 6579 5965 3 682 2052 41 0 0 chr6 12720561 12720807 -136796230 + L1Md_F2 LINE L1 5710 5955 -627 3 682 585 332 78 9 chr6 12721068 12721287 -136795750 + B4A SINE B4 51 284 -8 3 682 405 0 0 0 chr6 12721291 12721336 -136795701 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 682 21 0 0 0 chr6 12721512 12721533 -136795504 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 691 297 122 5 chr6 12724008 12724270 -136792767 - MTD LTR MaLR -6 415 120 3 682 1629 199 86 15 chr6 12724297 12724633 -136792404 - ORR1D1 LTR MaLR 0 374 15 3 682 31 58 0 0 chr6 12724823 12724875 -136792162 + AT_rich Low_complexity Low_complexity 1 52 0 3 682 1393 269 52 28 chr6 12724958 12725424 -136791613 - Lx9 LINE L1 -79 7565 7089 3 682 31610 94 25 3 chr6 12725442 12730919 -136786118 + L1Md_F2 LINE L1 6 5585 -298 3 682 7470 75 2 3 chr6 12730920 12731905 -136785132 + L1Md_F2 LINE L1 5587 6570 -12 3 682 1840 293 84 25 chr6 12731916 12732570 -136784467 - Lx9 LINE L1 -594 7050 6358 3 682 783 21 0 0 chr6 12732577 12732670 -136784367 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 682 679 251 107 21 chr6 12733361 12733548 -136783489 + ID_B1 SINE B4 6 208 -16 3 682 225 0 0 0 chr6 12734394 12734419 -136782618 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 3 682 28 0 0 0 chr6 12734469 12734497 -136782540 + AT_rich Low_complexity Low_complexity 1 28 0 3 682 367 88 79 24 chr6 12734497 12734537 -136782500 + (TATAA)n Simple_repeat Simple_repeat 3 46 0 3 682 204 0 26 53 chr6 12734537 12734575 -136782462 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 682 367 88 79 24 chr6 12734575 12734586 -136782451 + (TATAA)n Simple_repeat Simple_repeat 2 11 0 3 682 693 31 93 0 chr6 12734586 12734748 -136782289 + (TA)n Simple_repeat Simple_repeat 1 177 0 3 682 367 88 79 24 chr6 12734748 12734859 -136782178 + (TATAA)n Simple_repeat Simple_repeat 2 119 0 3 682 36 23 0 0 chr6 12734859 12734902 -136782135 + AT_rich Low_complexity Low_complexity 1 43 0 3 682 21 0 0 0 chr6 12735547 12735568 -136781469 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 521 304 178 103 chr6 12737078 12737624 -136779413 - RLTR18 LTR ERVK 0 616 30 3 682 240 35 0 0 chr6 12737870 12737899 -136779138 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 682 1362 163 17 191 chr6 12737907 12738377 -136778660 - RMER17C LTR ERVK -22 388 1 3 682 369 138 38 0 chr6 12739352 12739432 -136777605 + GA-rich Low_complexity Low_complexity 2 84 0 3 682 21 0 0 0 chr6 12739580 12739601 -136777436 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 217 250 135 11 chr6 12739698 12739787 -136777250 + L3 LINE CR1 807 906 -3583 3 682 221 0 0 33 chr6 12739860 12739890 -136777147 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 682 1002 73 0 42 chr6 12739890 12740032 -136777005 - B1_Mus2 SINE Alu -10 137 2 3 682 22 35 0 0 chr6 12740640 12740669 -136776368 + AT_rich Low_complexity Low_complexity 1 29 0 3 682 25 65 0 0 chr6 12741518 12741564 -136775473 + AT_rich Low_complexity Low_complexity 1 46 0 3 682 971 199 171 89 chr6 12741896 12742211 -136774826 - ORR1D1 LTR MaLR -4 370 30 3 682 234 0 0 0 chr6 12742684 12742710 -136774327 + (A)n Simple_repeat Simple_repeat 1 26 0 3 682 435 173 0 0 chr6 12745172 12745253 -136771784 + (TAAA)n Simple_repeat Simple_repeat 4 84 0 3 682 1955 159 32 92 chr6 12745253 12745723 -136771314 - RMER10A LTR ERVL 0 442 1 3 682 262 290 47 57 chr6 12747014 12747120 -136769917 + PB1D9 SINE Alu 9 113 -7 3 682 21 57 0 0 chr6 12747954 12747989 -136769048 + AT_rich Low_complexity Low_complexity 1 35 0 3 682 280 266 26 34 chr6 12748054 12748171 -136768866 - L1M6 LINE L1 -4800 1696 1581 3 682 939 284 50 103 chr6 12748262 12748628 -136768409 - MTE2a LTR MaLR -3 376 28 3 682 2024 172 69 76 chr6 12748628 12749193 -136767844 - RLTR31_Mm LTR ERVK 0 561 1 3 682 939 284 50 103 chr6 12749193 12749223 -136767814 - MTE2a LTR MaLR -352 27 1 3 682 3535 42 0 32 chr6 12749224 12749677 -136767360 - L1Md_F3 LINE L1 0 6584 6146 3 682 2804 19 0 0 chr6 12749677 12749999 -136767038 - RLTRETN_Mm LTR ERVK 0 322 1 3 682 3535 42 0 32 chr6 12749999 12750012 -136767025 - L1Md_F3 LINE L1 -439 6145 6133 3 682 515 66 0 13 chr6 12750103 12750180 -136766857 + (TA)n Simple_repeat Simple_repeat 2 77 0 3 682 1829 198 26 49 chr6 12750262 12750649 -136766388 - ORR1C1 LTR MaLR 0 378 1 3 682 882 186 0 40 chr6 12750810 12751011 -136766026 - B2_Mm2 SINE B2 -2 193 1 3 682 722 359 19 33 chr6 12751696 12751967 -136765070 - B4A SINE B4 -25 267 1 3 682 257 188 12 0 chr6 12752225 12752305 -136764732 + (TCTCTG)n Simple_repeat Simple_repeat 3 83 0 3 682 232 250 19 28 chr6 12752314 12752421 -136764616 + A-rich Low_complexity Low_complexity 1 106 0 3 682 369 0 0 0 chr6 12752431 12752472 -136764565 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 682 545 282 48 0 chr6 12752472 12752660 -136764377 - Lx7 LINE L1 -379 7317 7121 3 682 24 32 0 0 chr6 12752770 12752801 -136764236 + AT_rich Low_complexity Low_complexity 1 31 0 3 682 1865 160 0 60 chr6 12753256 12753603 -136763434 + ORR1A3 LTR MaLR 1 326 0 3 682 261 243 53 24 chr6 12753952 12754036 -136763001 + BC1_Mm scRNA scRNA 6 91 -61 3 682 1381 349 118 25 chr6 12754050 12754891 -136762146 + Lx8 LINE L1 6299 7223 -250 3 682 1139 78 18 0 chr6 12754891 12755057 -136761980 + (GAAAA)n Simple_repeat Simple_repeat 2 170 0 3 682 1381 349 118 25 chr6 12755057 12755233 -136761804 + Lx8 LINE L1 7224 7411 -62 3 682 427 356 14 0 chr6 12755420 12755566 -136761471 - RSINE1 SINE B4 -15 150 3 3 682 26 64 0 0 chr6 12755572 12755619 -136761418 + AT_rich Low_complexity Low_complexity 1 47 0 3 682 796 255 50 0 chr6 12756091 12756291 -136760746 - B3 SINE B2 -5 211 2 3 682 260 217 0 0 chr6 12756392 12756452 -136760585 + A-rich Low_complexity Low_complexity 1 60 0 3 682 308 288 25 0 chr6 12756700 12756780 -136760257 - MER117 DNA MER1_type -88 109 28 3 682 601 215 0 8 chr6 12757042 12757164 -136759873 - Lx9 LINE L1 -230 7414 7294 3 682 318 245 39 48 chr6 12757305 12757408 -136759629 - RCHARR1 DNA MER1_type -281 693 592 3 682 1348 235 70 22 chr6 12757603 12758016 -136759021 + RCHARR1 DNA MER1_type 511 943 -31 3 682 3482 245 75 20 chr6 12758021 12758084 -136758953 + Lx6 LINE L1 6328 6394 -1066 3 682 459 0 0 0 chr6 12758084 12758135 -136758902 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 682 3482 245 75 20 chr6 12758135 12758970 -136758067 + Lx6 LINE L1 6395 7274 -186 3 682 229 374 114 0 chr6 12759104 12759235 -136757802 - MIRb SINE MIR 0 268 123 3 682 200 197 30 15 chr6 12759246 12759313 -136757724 + (TTTG)n Simple_repeat Simple_repeat 4 71 0 3 682 237 128 0 0 chr6 12759315 12759362 -136757675 + (T)n Simple_repeat Simple_repeat 1 47 0 3 682 295 239 60 0 chr6 12762042 12762109 -136754928 - MER33 DNA MER1_type -215 109 39 3 682 550 317 41 33 chr6 12762456 12762796 -136754241 - MER47B DNA MER2_type -3 415 8 3 682 865 129 181 0 chr6 12762985 12763140 -136753897 + B2_Mm2 SINE B2 2 184 -11 3 682 490 347 70 52 chr6 12763159 12763445 -136753592 + B4A SINE B4 2 292 0 3 682 1390 133 15 64 chr6 12763518 12763783 -136753254 + RLTRETN_Mm LTR ERVK 71 322 0 3 682 1533 228 136 48 chr6 12763789 12764365 -136752672 + RLTR1 LTR ERV1 2 603 -21 3 682 2455 206 14 12 chr6 12765495 12766011 -136751026 + RLTR11A2 LTR ERVK 1 517 -10 3 682 1725 151 28 62 chr6 12766076 12766401 -136750636 - ORR1A3 LTR MaLR -8 318 5 3 682 6794 158 57 9 chr6 12766405 12767702 -136749335 - ORR1A3-int LTR MaLR 0 1963 474 3 682 13642 163 14 13 chr6 12767726 12768617 -136748420 + Lx2 LINE L1 3314 4195 -1682 3 682 2505 100 139 19 chr6 12768617 12769047 -136747990 - RLTR45 LTR ERVK 0 482 1 3 682 13642 163 14 13 chr6 12769047 12770489 -136746548 + Lx2 LINE L1 4196 5654 -223 3 682 1612 182 50 60 chr6 12770489 12770886 -136746151 + RLTR9C LTR ERVK 1 393 0 3 682 13642 131 24 10 chr6 12770886 12772201 -136744836 + Lx2 LINE L1 5655 6997 0 3 682 569 180 27 9 chr6 12772236 12772348 -136744689 - ORR1B1 LTR MaLR -279 115 2 3 682 1653 207 177 2 chr6 12772350 12772686 -136744351 + Lx6 LINE L1 3874 4286 -1594 3 682 555 90 0 0 chr6 12772686 12772764 -136744273 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 3 682 1653 207 177 2 chr6 12772764 12772902 -136744135 + Lx6 LINE L1 4287 4430 -1450 3 682 1216 198 67 14 chr6 12772908 12773239 -136743798 + RLTR20B3 LTR ERVK 1 536 -41 3 682 3361 184 9 25 chr6 12773241 12773921 -136743116 + MYSERV16_I-int LTR ERVK 111 779 -1547 3 682 344 151 14 0 chr6 12773947 12774002 -136743035 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 682 417 39 0 0 chr6 12774002 12774053 -136742984 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 682 344 151 14 0 chr6 12774053 12774070 -136742967 + (TA)n Simple_repeat Simple_repeat 1 17 0 3 682 544 152 10 0 chr6 12774102 12774201 -136742836 + MYSERV16_I-int LTR ERVK 813 912 -1414 3 682 182 226 116 101 chr6 12774201 12774270 -136742767 + L3 LINE CR1 905 974 -3515 3 682 6680 153 43 22 chr6 12774270 12775584 -136741453 + MYSERV16_I-int LTR ERVK 984 2325 -1 3 682 3052 181 24 18 chr6 12775585 12776158 -136740879 + RLTR20B3 LTR ERVK 1 577 0 3 682 5848 211 46 9 chr6 12776159 12776352 -136740685 + Lx6 LINE L1 4433 4631 -1249 3 682 208 77 51 0 chr6 12776352 12776391 -136740646 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 682 5848 208 55 12 chr6 12776391 12777625 -136739412 + Lx6 LINE L1 4632 5914 -1546 3 682 21 0 0 0 chr6 12778395 12778416 -136738621 + AT_rich Low_complexity Low_complexity 1 21 0 4 682 250 358 176 47 chr6 12778615 12778911 -136738126 - MLT1E3 LTR MaLR -68 556 223 4 682 1054 224 62 0 chr6 12779293 12779503 -136737534 + MTC LTR MaLR 3 225 -196 4 682 2060 155 14 25 chr6 12779503 12779861 -136737176 - ORR1B1 LTR MaLR 0 394 41 4 682 990 224 5 19 chr6 12779863 12780072 -136736965 + MTC LTR MaLR 216 421 0 4 682 1592 229 68 18 chr6 12780071 12780471 -136736566 + MTC-int LTR MaLR 2 421 -837 4 682 1173 244 48 62 chr6 12780471 12780778 -136736259 + ORR1B1 LTR MaLR 1 276 -118 4 682 881 207 164 173 chr6 12781096 12781182 -136735855 - RLTR41 LTR ERV1 0 446 371 4 682 555 16 0 0 chr6 12781182 12781246 -136735791 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 682 297 0 0 0 chr6 12781246 12781278 -136735759 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 682 881 207 164 173 chr6 12781278 12781371 -136735666 - RLTR41 LTR ERV1 -76 370 319 4 682 1633 36 0 0 chr6 12781371 12781564 -136735473 + B2_Mm1a SINE B2 1 193 0 4 682 881 207 164 173 chr6 12781564 12781832 -136735205 - RLTR41 LTR ERV1 -128 318 2 4 682 205 88 29 0 chr6 12783994 12784028 -136733009 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 4 682 187 239 73 140 chr6 12784061 12784197 -136732840 + L3 LINE CR1 840 966 -3523 4 682 353 279 23 92 chr6 12785079 12785171 -136731866 + Lx8 LINE L1 6846 6938 -535 4 682 2429 145 20 10 chr6 12785171 12785567 -136731470 + RLTR9D LTR ERVK 1 400 -3 4 682 1864 108 303 11 chr6 12785571 12785944 -136731093 + RLTR45 LTR ERVK 1 482 0 4 682 353 279 23 92 chr6 12785944 12786020 -136731017 + Lx8 LINE L1 6939 7006 -467 4 682 1890 182 226 5 chr6 12786050 12786472 -136730565 - RMER20A LTR ERVK 0 516 1 4 682 421 248 21 31 chr6 12786745 12786882 -136730155 - MTD LTR MaLR -41 380 217 4 682 891 85 0 0 chr6 12787457 12787586 -136729451 + Lx LINE L1 5943 6071 -583 4 682 1547 241 37 68 chr6 12788067 12788250 -136728787 + RMER5 LTR ERV1 47 221 -313 4 682 243 61 0 0 chr6 12788250 12788283 -136728754 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 682 1547 241 37 68 chr6 12788283 12788585 -136728452 + RMER5 LTR ERV1 222 517 -17 4 682 868 186 78 37 chr6 12788672 12788892 -136728145 + ORR1B2 LTR MaLR 1 210 -157 4 682 567 234 182 59 chr6 12788929 12789165 -136727872 + RLTR10A LTR ERVK 147 411 0 4 682 342 209 54 54 chr6 12789181 12789292 -136727745 + RLTR45-int LTR ERVK 318 428 -1559 4 682 442 306 42 19 chr6 12789673 12789989 -136727048 + RLTR45-int LTR ERVK 4891 5071 -1471 4 682 1761 205 14 26 chr6 12790105 12790592 -136726445 + RLTR45-int LTR ERVK 6529 7042 -202 4 682 615 235 175 49 chr6 12790618 12790864 -136726173 + RLTR10A LTR ERVK 135 411 0 4 682 851 148 82 0 chr6 12790864 12791015 -136726022 + ORR1C1 LTR MaLR 226 394 0 4 682 1850 192 44 0 chr6 12792828 12793188 -136723849 - ORR1C1 LTR MaLR 0 378 3 4 682 204 300 0 39 chr6 12793337 12793441 -136723596 + CT-rich Low_complexity Low_complexity 4 103 0 4 682 439 313 121 79 chr6 12793493 12793798 -136723239 - ORR1E LTR MaLR -39 320 3 4 682 1295 257 119 80 chr6 12793846 12794068 -136722969 - ORR1E-int LTR MaLR -53 1739 1345 4 682 4249 106 5 3 chr6 12794068 12794683 -136722354 + Lx3_Mus LINE L1 6394 7009 0 4 682 1295 307 110 121 chr6 12794683 12795371 -136721666 - ORR1E-int LTR MaLR -236 1344 602 4 682 186 330 88 49 chr6 12795902 12796004 -136721033 + L3 LINE CR1 3522 3627 -862 4 682 932 136 6 0 chr6 12796047 12796209 -136720828 + (TCCC)n Simple_repeat Simple_repeat 3 165 0 4 682 869 173 6 18 chr6 12796210 12796375 -136720662 - RLTR14 LTR ERV1 -208 174 12 4 682 612 177 78 7 chr6 12796401 12796543 -136720494 + RMER4B LTR ERVK 15 166 -419 4 682 787 171 143 0 chr6 12796665 12796875 -136720162 + Lx9 LINE L1 7401 7640 -4 4 682 343 367 20 7 chr6 12796915 12797063 -136719974 - B3 SINE B2 -28 188 39 4 682 573 52 0 0 chr6 12797072 12797149 -136719888 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 682 533 123 15 103 chr6 12797179 12797315 -136719722 - Lx3_Mus LINE L1 0 7009 6886 4 682 222 91 0 0 chr6 12797985 12798018 -136719019 + (TGG)n Simple_repeat Simple_repeat 1 33 0 4 682 2096 159 286 13 chr6 12798261 12798803 -136718234 + RMER6C LTR ERVK 1 690 0 4 682 319 261 14 0 chr6 12799462 12799531 -136717506 + B3A SINE B2 1 70 -128 4 682 342 0 0 0 chr6 12799531 12799569 -136717468 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 682 6521 157 30 27 chr6 12799718 12800906 -136716131 - Lx4A LINE L1 0 7058 5868 4 682 632 283 7 20 chr6 12800960 12801108 -136715929 + RSINE1 SINE B4 19 164 -1 4 682 23 0 0 0 chr6 12801253 12801276 -136715761 + AT_rich Low_complexity Low_complexity 1 23 0 4 682 251 365 48 66 chr6 12801361 12801528 -136715509 + MTD LTR MaLR 16 179 -240 4 682 2594 202 55 44 chr6 12801539 12802196 -136714841 - RMER6C LTR ERVK 0 690 27 4 682 465 263 139 0 chr6 12802204 12802341 -136714696 + MTD LTR MaLR 185 340 -79 4 682 381 314 68 64 chr6 12802593 12802899 -136714138 - MLT1B LTR MaLR -6 384 3 4 682 261 253 49 25 chr6 12803021 12803102 -136713935 - MER67C LTR ERV1 -306 405 323 4 682 878 76 129 0 chr6 12803104 12803236 -136713801 + L1Md_F2 LINE L1 6327 6475 -107 4 682 1581 215 146 11 chr6 12804004 12804209 -136712828 + RLTR11A LTR ERVK 4 230 -298 4 682 576 0 0 0 chr6 12804209 12804273 -136712764 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 682 1581 215 146 11 chr6 12804273 12804505 -136712532 + RLTR11A LTR ERVK 231 499 -29 4 682 233 290 118 42 chr6 12804775 12804788 -136712249 + ID_B1 SINE B4 70 147 -77 4 682 368 310 159 0 chr6 12804788 12804842 -136712195 + B1_Mur2 SINE Alu 3 57 -92 4 682 600 53 0 0 chr6 12804842 12804918 -136712119 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 682 368 310 159 0 chr6 12804918 12804976 -136712061 + B1_Mur2 SINE Alu 58 131 -18 4 682 342 0 0 0 chr6 12804982 12805020 -136712017 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 682 233 290 118 42 chr6 12805020 12805031 -136712006 + ID_B1 SINE B4 214 223 -1 4 682 31 26 0 0 chr6 12805376 12805414 -136711623 + AT_rich Low_complexity Low_complexity 1 38 0 4 682 204 344 36 60 chr6 12805919 12806086 -136710951 - L4 LINE RTE -1023 1006 844 4 682 418 333 22 28 chr6 12808880 12809062 -136707975 + MTEa LTR MaLR 1 181 -198 4 682 1956 119 24 60 chr6 12809064 12809395 -136707642 - ORR1A2 LTR MaLR -8 319 1 4 682 638 297 56 0 chr6 12809395 12809589 -136707448 + MTEa LTR MaLR 175 379 0 4 682 729 326 74 25 chr6 12809589 12810050 -136706987 + MTEa-int LTR MaLR 764 1182 -398 4 682 320 302 0 25 chr6 12810050 12810172 -136706865 + Lx5 LINE L1 6560 6678 -372 4 682 342 248 24 24 chr6 12810220 12810344 -136706693 + Lx6 LINE L1 7310 7433 -27 4 682 482 227 155 14 chr6 12810870 12811054 -136705983 + ORR1A4 LTR MaLR 174 374 0 4 682 1148 208 23 0 chr6 12811097 12811318 -136705719 + ORR1B1 LTR MaLR 169 394 0 4 682 2077 259 110 26 chr6 12811768 12812431 -136704606 + Lx6 LINE L1 6717 7435 -25 4 682 1000 183 10 5 chr6 12813990 12814182 -136702855 - Lx4A LINE L1 -90 6968 6776 4 682 339 169 12 0 chr6 12814204 12814287 -136702750 + Lx4A LINE L1 6974 7057 -1 4 682 623 84 11 0 chr6 12814429 12814524 -136702513 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 4 682 779 247 21 36 chr6 12815311 12815504 -136701533 - B3 SINE B2 -1 215 26 4 682 248 296 51 43 chr6 12815565 12815703 -136701334 + L1M4 LINE L1 5479 5617 -567 4 682 546 312 62 31 chr6 12815850 12815873 -136701164 - B3A SINE B2 0 198 181 4 682 480 35 0 0 chr6 12815873 12815931 -136701106 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 682 546 312 62 31 chr6 12815931 12816099 -136700938 - B3A SINE B2 -18 180 2 4 682 489 225 12 153 chr6 12816099 12816260 -136700777 + MTC LTR MaLR 284 421 0 4 682 3487 20 2 0 chr6 12816297 12816692 -136700345 - MTA_Mm LTR MaLR 0 396 1 4 682 2721 84 0 16 chr6 12816809 12817184 -136699853 - L1Md_F2 LINE L1 -12 6570 6202 4 682 1611 151 73 38 chr6 12817397 12817713 -136699324 - ORR1A2 LTR MaLR 0 327 1 4 682 475 305 58 7 chr6 12818299 12818454 -136698583 - B3A SINE B2 -35 163 1 4 682 36442 41 0 3 chr6 12818979 12825313 -136691724 + L1Md_T LINE L1 38 6449 -136 4 682 3941 59 60 8 chr6 12825313 12825845 -136691192 - LTRIS2 LTR ERV1 0 564 5 4 682 1062 57 0 0 chr6 12825847 12825987 -136691050 + L1Md_T LINE L1 6446 6585 0 4 682 251 234 62 0 chr6 12826420 12826484 -136690553 - MTD LTR MaLR -2 417 350 4 682 4122 178 59 28 chr6 12826547 12827414 -136689623 + RLTR13D6 LTR ERVK 1 894 -8 4 682 504 298 47 33 chr6 12827392 12827644 -136689393 - MTD LTR MaLR -161 258 1 4 682 27 29 0 0 chr6 12827839 12827873 -136689164 + AT_rich Low_complexity Low_complexity 1 34 0 4 682 12842 156 118 5 chr6 12827873 12831499 -136685538 - Lx LINE L1 -12 6642 2562 4 682 1233 159 86 0 chr6 12831486 12831731 -136685306 - L1VL4 LINE L1 -5743 559 294 4 682 219 139 0 0 chr6 12833323 12833359 -136683678 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 682 257 376 57 16 chr6 12833473 12833665 -136683372 + MLT1J-int LTR MaLR 247 446 -941 4 682 21 36 0 0 chr6 12833975 12834003 -136683034 + AT_rich Low_complexity Low_complexity 1 28 0 4 682 2979 97 19 0 chr6 12834230 12834641 -136682396 - Lx3_Mus LINE L1 -300 6709 6291 4 682 4635 93 18 8 chr6 12834634 12835553 -136681484 + Lx3_Mus LINE L1 5351 6271 -738 4 682 188 211 26 0 chr6 12837062 12837100 -136679937 - L3 LINE CR1 -270 4219 4181 4 682 686 236 0 79 chr6 12837313 12837441 -136679596 - B1_Mur3 SINE Alu -9 140 24 4 682 2253 98 88 23 chr6 12837441 12837827 -136679210 + IAPLTR2a LTR ERVK 1 411 0 4 682 686 236 0 79 chr6 12837827 12837850 -136679187 - B1_Mur3 SINE Alu -126 23 1 4 682 1080 92 0 14 chr6 12837975 12838108 -136678929 + B1_Mus1 SINE Alu 3 135 -13 4 682 279 0 0 0 chr6 12838108 12838139 -136678898 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 4 682 258 139 0 0 chr6 12838292 12838335 -136678702 + MT2A LTR ERVL 1 43 -490 4 682 982 285 16 8 chr6 12838328 12838579 -136678458 + MT2A LTR ERVL 212 464 -69 4 682 692 227 0 7 chr6 12838601 12838752 -136678285 + MTEa LTR MaLR 228 377 -2 4 682 632 152 9 0 chr6 12838886 12838991 -136678046 - B2_Mm2 SINE B2 -88 107 2 4 682 1987 142 23 43 chr6 12838991 12839335 -136677702 - RMER6C LTR ERVK -353 337 1 4 682 360 0 0 0 chr6 12840719 12840759 -136676278 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 682 21 0 0 0 chr6 12841452 12841473 -136675564 + AT_rich Low_complexity Low_complexity 1 21 0 4 682 4796 100 11 68 chr6 12842267 12843073 -136673964 - RLTR13B4 LTR ERVK -2 801 42 4 682 284 311 121 94 chr6 12844311 12844609 -136672428 + ORR1E LTR MaLR 54 359 0 4 683 789 268 30 15 chr6 12845681 12845842 -136671195 + B3 SINE B2 6 167 -49 4 683 318 50 0 0 chr6 12845842 12845882 -136671155 + (CATA)n Simple_repeat Simple_repeat 4 43 0 4 683 789 268 30 15 chr6 12845882 12845921 -136671116 + B3 SINE B2 168 208 -8 4 683 187 56 83 0 chr6 12846976 12847012 -136670025 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 683 378 0 0 0 chr6 12847049 12847091 -136669946 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 683 7634 62 14 1 chr6 12847462 12848671 -136668366 + L1_Mus1 LINE L1 5365 6565 -2 5 683 210 163 0 58 chr6 12848677 12848729 -136668308 + A-rich Low_complexity Low_complexity 2 50 0 5 683 2123 39 0 0 chr6 12848866 12849125 -136667912 - L1_Mm LINE L1 -1315 4568 4310 5 683 1292 80 5 0 chr6 12849126 12849314 -136667723 + L1Md_F2 LINE L1 6393 6581 -1 5 683 829 108 23 6 chr6 12849732 12849909 -136667128 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 683 289 306 0 0 chr6 12849924 12849996 -136667041 + B4 SINE B4 69 140 -152 5 683 417 245 25 117 chr6 12849945 12850065 -136666972 + B1F1 SINE Alu 5 113 -7 5 683 21 36 0 0 chr6 12850068 12850096 -136666941 + AT_rich Low_complexity Low_complexity 1 28 0 5 683 319 230 18 0 chr6 12850842 12850955 -136666082 + GA-rich Low_complexity Low_complexity 2 116 0 5 683 431 218 20 7 chr6 12850970 12851118 -136665919 + GA-rich Low_complexity Low_complexity 2 151 0 5 683 219 281 41 2 chr6 12851826 12851899 -136665138 - B1F SINE Alu -8 109 38 5 683 1127 56 28 0 chr6 12854058 12854200 -136662837 - B1_Mus2 SINE Alu 0 147 2 5 683 4583 58 0 0 chr6 12854777 12855346 -136661691 - L1_Mus1 LINE L1 -1 6566 5998 5 683 29 47 0 0 chr6 12856721 12856764 -136660273 + AT_rich Low_complexity Low_complexity 1 43 0 5 683 1192 280 61 14 chr6 12857255 12857614 -136659423 + MTD LTR MaLR 44 419 0 5 683 752 296 98 18 chr6 12857614 12858002 -136659035 + Lx9 LINE L1 7055 7473 -171 5 683 279 0 0 0 chr6 12858009 12858040 -136658997 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 683 49 84 0 0 chr6 12858100 12858219 -136658818 + AT_rich Low_complexity Low_complexity 1 119 0 5 683 712 251 103 0 chr6 12858415 12858590 -136658447 - B3 SINE B2 -21 195 3 5 683 290 317 36 63 chr6 12858590 12858701 -136658336 - B3A SINE B2 0 198 91 5 683 213 39 0 0 chr6 12859546 12859572 -136657465 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 683 38 22 0 0 chr6 12860022 12860067 -136656970 + AT_rich Low_complexity Low_complexity 1 45 0 5 683 1341 255 102 36 chr6 12862236 12862628 -136654409 - MTD LTR MaLR -14 405 1 5 683 1164 232 91 6 chr6 12862849 12863191 -136653846 + Lx9 LINE L1 7268 7638 -6 5 683 255 161 0 16 chr6 12864672 12864735 -136652302 + Lx6 LINE L1 7399 7460 0 5 683 396 0 0 0 chr6 12864821 12864865 -136652172 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 683 561 15 0 0 chr6 12864865 12864931 -136652106 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 683 920 284 42 0 chr6 12864964 12865200 -136651837 - B4A SINE B4 -44 248 3 5 683 6173 148 34 13 chr6 12866767 12867856 -136649181 - Lx2B LINE L1 -44 6956 5922 5 683 324 288 32 52 chr6 12868084 12868238 -136648799 - L1MCa LINE L1 -6342 166 16 5 683 1677 245 16 5 chr6 12868516 12868902 -136648135 + MER57C2 LTR ERV1 19 408 -26 5 683 1661 93 4 50 chr6 12870482 12870742 -136646295 - L1Md_F2 LINE L1 -603 5979 5732 5 683 4634 57 0 3 chr6 12870742 12871322 -136645715 + L1Md_F2 LINE L1 5993 6570 -12 5 683 742 214 0 78 chr6 12871322 12871350 -136645687 - Lx7 LINE L1 -1966 5730 5704 5 683 295 369 18 18 chr6 12871368 12871481 -136645556 + MLT1D LTR MaLR 288 400 -105 5 683 553 279 116 7 chr6 12871538 12871693 -136645344 - B3A SINE B2 -24 174 3 5 683 407 367 66 44 chr6 12873674 12873945 -136643092 - B4 SINE B4 -10 282 6 5 683 495 102 0 0 chr6 12876848 12876936 -136640101 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 683 539 302 107 15 chr6 12878218 12878423 -136638614 + Lx8 LINE L1 7074 7297 -176 5 683 459 0 0 0 chr6 12878566 12878617 -136638420 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 683 275 259 17 0 chr6 12878691 12878749 -136638288 + ID4_ SINE ID 3 61 -22 5 683 233 261 75 30 chr6 12880091 12880158 -136636879 - LTR79 LTR ERVL -317 210 141 5 683 494 137 16 8 chr6 12880175 12880291 -136636746 + B1_Mus2 SINE Alu 34 149 0 5 683 251 71 24 0 chr6 12880304 12880346 -136636691 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 683 305 264 58 110 chr6 12880622 12880891 -136636146 + L1MEg LINE L1 1753 1994 -5339 5 683 716 245 42 11 chr6 12880974 12881164 -136635873 + B3A SINE B2 2 197 -1 5 683 297 0 0 0 chr6 12881634 12881667 -136635370 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 683 5012 129 60 19 chr6 12882026 12882885 -136634152 - Lx LINE L1 -2 6652 5758 5 683 700 186 20 41 chr6 12882889 12883035 -136634002 + B1_Mus2 SINE Alu 5 147 0 5 683 940 313 151 24 chr6 12883562 12884020 -136633017 - MER68 LTR ERVL -2 561 46 5 683 207 0 0 0 chr6 12884645 12884668 -136632369 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 683 4421 143 4 11 chr6 12884905 12885628 -136631409 + Lx4A LINE L1 6341 7058 0 5 683 251 179 44 15 chr6 12885827 12885895 -136631142 + Lx9 LINE L1 7103 7172 -472 5 683 1966 268 128 63 chr6 12885927 12886677 -136630360 + Lx6 LINE L1 6629 7427 -33 5 683 415 293 0 8 chr6 12886707 12886824 -136630213 + Lx9 LINE L1 7261 7376 -268 5 683 563 40 14 0 chr6 12886999 12887073 -136629964 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 683 300 304 96 16 chr6 12887101 12887377 -136629660 + L1MB1 LINE L1 5878 6168 0 5 683 642 275 74 5 chr6 12887819 12888009 -136629028 + B3 SINE B2 14 216 0 5 683 27 73 0 0 chr6 12889872 12889927 -136627110 + AT_rich Low_complexity Low_complexity 1 55 0 5 683 8674 148 29 58 chr6 12889965 12891427 -136625610 + L1_Mur2 LINE L1 3144 4573 -1304 5 683 423 0 0 0 chr6 12891427 12891474 -136625563 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 683 8674 148 29 58 chr6 12891474 12891759 -136625278 + L1_Mur2 LINE L1 4574 4840 -1037 5 683 6349 130 21 8 chr6 12891751 12893081 -136623956 + Lx LINE L1 5270 6619 -35 5 683 185 0 0 39 chr6 12893084 12893110 -136623927 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 5 683 349 278 125 40 chr6 12893545 12893721 -136623316 - Lx8 LINE L1 -6 7467 7277 5 683 387 0 0 0 chr6 12893801 12893844 -136623193 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 683 393 22 0 0 chr6 12894071 12894117 -136622920 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 683 23 54 0 0 chr6 12894293 12894330 -136622707 + AT_rich Low_complexity Low_complexity 1 37 0 5 683 250 246 16 32 chr6 12895206 12895269 -136621768 + ID_B1 SINE B4 158 219 -5 5 683 207 52 67 33 chr6 12895484 12895544 -136621493 + (TTA)n Simple_repeat Simple_repeat 2 63 0 5 683 273 301 35 0 chr6 12896584 12896697 -136620340 - L1MC3 LINE L1 -1661 6124 6008 5 683 392 294 43 60 chr6 12897043 12897278 -136619759 - RLTR42-int LTR ERVK -4136 1386 1156 5 683 231 240 19 94 chr6 12897291 12897397 -136619640 - L1MC3 LINE L1 -1841 5944 5847 5 683 25 31 0 0 chr6 12897565 12897597 -136619440 + AT_rich Low_complexity Low_complexity 1 32 0 5 683 667 241 62 3 chr6 12897754 12898062 -136618975 + L1MC LINE L1 5181 5510 -2485 5 683 735 12 0 0 chr6 12898539 12898623 -136618414 + (TTC)n Simple_repeat Simple_repeat 2 85 0 5 683 5103 206 98 18 chr6 12898635 12900158 -136616879 - Lx4B LINE L1 -5 7053 5374 5 683 2191 184 21 67 chr6 12900154 12900570 -136616467 - Lx4B LINE L1 -3417 2460 2057 5 683 558 0 0 0 chr6 12900570 12900632 -136616405 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 683 264 30 0 0 chr6 12900632 12900664 -136616373 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 683 2191 184 21 67 chr6 12900664 12900675 -136616362 - L1_Mur2 LINE L1 -3821 2056 2056 5 683 189 0 0 0 chr6 12900675 12900696 -136616341 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 683 2191 184 21 67 chr6 12900696 12900837 -136616200 - Lx4B LINE L1 -3821 2056 1917 5 683 8422 75 23 2 chr6 12900825 12902626 -136614411 - L1Md_F2 LINE L1 -3 6579 4747 5 683 3397 171 51 0 chr6 12902646 12903584 -136613453 - Lx4B LINE L1 -3961 1916 926 5 683 277 337 111 10 chr6 12904002 12904101 -136612936 - Lx8 LINE L1 -278 7195 7087 5 683 228 305 103 63 chr6 12904169 12904295 -136612742 + B1_Mus1 SINE Alu 12 142 -6 5 683 3172 280 40 37 chr6 12904513 12906002 -136611035 + L1_Mur3 LINE L1 1935 3428 -2452 5 683 1810 334 57 14 chr6 12906034 12906861 -136610176 + Lx8 LINE L1 6372 7233 -240 5 683 2161 157 47 23 chr6 12907016 12907401 -136609636 + ORR1B1 LTR MaLR 1 394 0 5 683 253 284 51 73 chr6 12907821 12907958 -136609079 + Tigger10 DNA Tigger 1668 1801 -42 5 683 869 260 124 3 chr6 12908026 12908308 -136608729 - RMER15 LTR ERVL -106 469 154 5 683 2042 120 6 31 chr6 12909697 12910024 -136607013 - ORR1A2 LTR MaLR -8 319 1 5 683 235 154 15 15 chr6 12910542 12910608 -136606429 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 683 7233 172 55 32 chr6 12911722 12913183 -136603854 - Lx4B LINE L1 -9 7049 5586 5 683 1590 223 18 56 chr6 12913412 12913806 -136603231 + Lx7 LINE L1 7030 7408 -288 5 683 2344 215 14 27 chr6 12913898 12914410 -136602627 + RLTR16 LTR ERVK 1 505 0 5 683 497 92 0 13 chr6 12914418 12914495 -136602542 + (TCC)n Simple_repeat Simple_repeat 3 78 0 5 683 223 182 0 0 chr6 12914495 12914539 -136602498 + T-rich Low_complexity Low_complexity 1 44 0 5 683 5217 155 21 29 chr6 12915612 12916516 -136600521 - RMER19B LTR ERVK -5 897 1 5 683 195 42 0 0 chr6 12916797 12916821 -136600216 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 683 640 212 91 91 chr6 12917374 12917571 -136599466 - ORR1D1 LTR MaLR 0 374 176 5 683 249 33 0 0 chr6 12917571 12917601 -136599436 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 5 683 244 127 18 18 chr6 12917611 12917667 -136599370 + GA-rich Low_complexity Low_complexity 3 58 0 5 683 2472 266 109 29 chr6 12918423 12919433 -136597604 - Lx6 LINE L1 -27 7433 6085 5 683 289 193 37 0 chr6 12919485 12919620 -136597417 + CT-rich Low_complexity Low_complexity 1 140 0 5 683 299 261 108 11 chr6 12920167 12920260 -136596777 - MT2A LTR ERVL -431 102 1 6 683 419 136 0 0 chr6 12920260 12920326 -136596711 - Lx9 LINE L1 -900 6744 6679 6 683 3480 60 2 2 chr6 12920363 12920812 -136596225 + L1Md_F2 LINE L1 6132 6580 -2 6 683 1023 137 12 6 chr6 12921938 12922107 -136594930 + Lx9 LINE L1 7315 7484 -160 6 683 423 0 0 0 chr6 12922286 12922333 -136594704 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 683 280 258 112 10 chr6 12923266 12923364 -136593673 - MER5B DNA MER1_type -7 171 64 6 683 525 316 64 26 chr6 12923900 12924244 -136592793 + L1M5 LINE L1 5429 5785 -394 6 683 216 0 0 0 chr6 12924277 12924301 -136592736 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 683 3938 202 42 11 chr6 12924473 12925290 -136591747 + Lx2B LINE L1 6159 7000 0 6 683 278 26 0 25 chr6 12925651 12925691 -136591346 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 683 3340 38 2 0 chr6 12925934 12926329 -136590708 - MTA_Mm LTR MaLR 0 396 1 6 683 22 80 0 0 chr6 12928721 12928771 -136588266 + AT_rich Low_complexity Low_complexity 1 50 0 6 683 583 307 94 4 chr6 12928785 12929040 -136587997 + B4A SINE B4 1 278 -14 6 683 207 0 0 0 chr6 12929266 12929289 -136587748 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 683 227 300 0 0 chr6 12931239 12931289 -136585748 + ID4 SINE ID 6 55 -28 6 683 214 259 12 0 chr6 12931298 12931379 -136585658 + (TA)n Simple_repeat Simple_repeat 1 82 0 6 683 190 326 74 0 chr6 12931615 12931710 -136585327 - MIR SINE MIR 0 262 161 6 683 912 281 80 23 chr6 12932044 12932346 -136584691 + MTEa LTR MaLR 49 367 -12 6 683 23 33 0 0 chr6 12932747 12932777 -136584260 + AT_rich Low_complexity Low_complexity 1 30 0 6 683 2851 182 155 16 chr6 12933282 12933646 -136583391 - RMER6D LTR ERVK -10 710 322 6 683 432 0 0 0 chr6 12933646 12933694 -136583343 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 683 2851 182 155 16 chr6 12933694 12933949 -136583088 - RMER6D LTR ERVK -399 321 7 6 683 3174 56 2 8 chr6 12934181 12934579 -136582458 - MTA_Mm LTR MaLR 0 396 1 6 683 33 56 0 0 chr6 12934948 12935002 -136582035 + AT_rich Low_complexity Low_complexity 1 54 0 6 683 24 77 0 0 chr6 12935019 12935071 -136581966 + AT_rich Low_complexity Low_complexity 1 52 0 6 683 944 254 0 49 chr6 12936787 12937011 -136580026 - B3 SINE B2 -3 213 1 6 683 814 94 147 16 chr6 12937549 12937678 -136579359 + B1_Mus1 SINE Alu 2 147 -1 6 683 335 108 46 0 chr6 12937883 12937948 -136579089 + L1Md_F2 LINE L1 6513 6580 -2 6 683 21 0 0 0 chr6 12937971 12937992 -136579045 + AT_rich Low_complexity Low_complexity 1 21 0 6 683 21 0 0 0 chr6 12938355 12938376 -136578661 + AT_rich Low_complexity Low_complexity 1 21 0 6 683 27 73 0 0 chr6 12938720 12938775 -136578262 + AT_rich Low_complexity Low_complexity 1 55 0 6 683 686 276 40 5 chr6 12939237 12939437 -136577600 - B3 SINE B2 -5 211 5 6 683 600 14 0 0 chr6 12939956 12940025 -136577012 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 683 288 0 0 0 chr6 12940025 12940056 -136576981 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 683 1239 111 15 31 chr6 12940471 12940667 -136576370 - B2_Mm2 SINE B2 -2 193 1 6 683 11231 95 39 1 chr6 12940727 12941167 -136575870 - MERVK26-int LTR ERVK -2069 4850 4383 6 683 480 35 0 0 chr6 12941167 12941225 -136575812 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 683 360 0 0 0 chr6 12941225 12941264 -136575773 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 683 13008 122 65 12 chr6 12941264 12945230 -136571807 - MERVK26-int LTR ERVK -2537 4382 47 6 683 2013 178 98 31 chr6 12945278 12945725 -136571312 + RMER17A-int LTR ERVK 1157 1633 -95 6 683 18340 24 1 1 chr6 12945731 12948579 -136568458 - L1Md_T LINE L1 0 6582 3735 6 683 2579 256 26 67 chr6 12948640 12949336 -136567701 + RMER17B LTR ERVK 1 658 -300 6 683 861 116 85 0 chr6 12949336 12949465 -136567572 + B1_Mus1 SINE Alu 1 140 -8 6 683 243 0 0 0 chr6 12949466 12949493 -136567544 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 6 683 2579 256 26 67 chr6 12949493 12949664 -136567373 + RMER17B LTR ERVK 659 835 -123 6 683 1529 194 137 3 chr6 12949709 12950096 -136566941 - Lx9 LINE L1 -37 7607 7169 6 683 22 56 0 0 chr6 12951615 12951651 -136565386 + AT_rich Low_complexity Low_complexity 1 36 0 6 683 1314 86 0 0 chr6 12951919 12952233 -136564804 + (CA)n Simple_repeat Simple_repeat 1 314 0 6 683 297 0 0 0 chr6 12952233 12952265 -136564772 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 683 470 83 14 0 chr6 12952389 12952461 -136564576 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 683 2358 286 91 11 chr6 12952512 12953304 -136563733 + Lx7 LINE L1 6509 7363 -333 6 683 189 0 0 0 chr6 12953365 12953386 -136563651 + (TTG)n Simple_repeat Simple_repeat 1 21 0 6 683 24 0 0 0 chr6 12953490 12953514 -136563523 + AT_rich Low_complexity Low_complexity 1 24 0 6 683 454 292 2 18 chr6 12953678 12953873 -136563164 + Lx7 LINE L1 5076 5324 -819 6 683 404 369 15 0 chr6 12953882 12954012 -136563025 + RSINE1 SINE B4 11 142 -23 6 683 1066 87 0 20 chr6 12954051 12954203 -136562834 + B1_Mur4 SINE Alu 2 150 0 6 683 190 83 0 77 chr6 12954203 12954255 -136562782 + A-rich Low_complexity Low_complexity 6 53 0 6 683 988 292 34 14 chr6 12954527 12954986 -136562051 + Lx7 LINE L1 5505 5976 -1668 6 683 538 288 47 56 chr6 12955209 12955445 -136561592 + Lx7 LINE L1 6296 6670 -974 6 683 243 376 55 55 chr6 12955906 12956269 -136560768 + Lx7 LINE L1 7108 7470 -3 6 683 661 191 175 17 chr6 12956607 12956833 -136560204 - MTD LTR MaLR 0 419 151 6 683 183 184 0 0 chr6 12956981 12957019 -136560018 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 683 239 0 0 31 chr6 12957309 12957341 -136559696 + (TAA)n Simple_repeat Simple_repeat 1 31 0 6 683 688 248 0 0 chr6 12957395 12957528 -136559509 + B1_Mur1 SINE Alu 10 142 -7 6 683 219 209 0 0 chr6 12958842 12958851 -136558186 + (CATA)n Simple_repeat Simple_repeat 2 10 0 6 683 225 0 0 0 chr6 12958851 12958876 -136558161 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 683 219 209 0 0 chr6 12958876 12958909 -136558128 + (CATA)n Simple_repeat Simple_repeat 3 35 0 6 683 2627 196 65 35 chr6 12959088 12959638 -136557399 + Lx5 LINE L1 6481 7047 -3 6 683 573 15 0 0 chr6 12959642 12959708 -136557329 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 683 22 0 0 0 chr6 12959913 12959935 -136557102 + AT_rich Low_complexity Low_complexity 1 22 0 6 683 1324 271 25 44 chr6 12960936 12961299 -136555738 - Lx6 LINE L1 0 7460 7105 6 683 25 0 0 0 chr6 12962023 12962048 -136554989 + AT_rich Low_complexity Low_complexity 1 25 0 6 683 870 243 50 0 chr6 12963140 12963168 -136553869 - ORR1D1-int LTR MaLR -1095 275 248 6 683 324 0 0 0 chr6 12963168 12963204 -136553833 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 683 870 243 50 0 chr6 12963204 12963393 -136553644 - ORR1D1-int LTR MaLR -1123 247 49 6 683 290 24 0 45 chr6 12963393 12963437 -136553600 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 6 683 227 132 0 0 chr6 12963458 12963496 -136553541 - ORR1D1-int LTR MaLR -1754 38 1 6 683 1491 213 46 27 chr6 12963496 12963823 -136553214 - ORR1D1 LTR MaLR 0 374 46 6 683 366 23 0 0 chr6 12963823 12963866 -136553171 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 683 219 36 0 0 chr6 12963866 12963894 -136553143 + (TA)n Simple_repeat Simple_repeat 1 28 0 6 683 1491 213 46 27 chr6 12963894 12963932 -136553105 - ORR1D1 LTR MaLR -329 45 2 6 683 1385 275 52 3 chr6 12963932 12964319 -136552718 - Lx9 LINE L1 -613 7031 6626 6 683 293 341 18 52 chr6 12964320 12964549 -136552488 + RLTR21 LTR ERVK 1034 1254 -318 6 683 7594 187 31 11 chr6 12964557 12966128 -136550909 + L1_Mur3 LINE L1 4201 5802 -78 6 683 1940 268 54 20 chr6 12966161 12966766 -136550271 + RMER1C Other Other 47 1054 -288 6 683 1173 90 66 22 chr6 12966813 12966995 -136550042 - RMER6B LTR ERVK -271 190 1 6 683 547 159 0 0 chr6 12966995 12967083 -136549954 + Lx6 LINE L1 6639 6726 -734 6 683 339 164 0 0 chr6 12967084 12967145 -136549892 + Lx7 LINE L1 6820 6880 -816 6 683 22 35 0 0 chr6 12967215 12967244 -136549793 + AT_rich Low_complexity Low_complexity 1 29 0 6 683 539 325 38 60 chr6 12967422 12967687 -136549350 + MLT1B LTR MaLR 1 259 -131 6 683 518 202 259 37 chr6 12968055 12968271 -136548766 - Lx4B LINE L1 -9 7049 6786 6 683 201 74 0 0 chr6 12968380 12968407 -136548630 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 683 219 345 0 0 chr6 12968408 12968466 -136548571 - RSINE1 SINE B4 -20 145 88 6 683 292 321 14 69 chr6 12968503 12968647 -136548390 - B4 SINE B4 -155 137 2 6 683 195 114 0 0 chr6 12968739 12968774 -136548263 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 683 637 305 109 7 chr6 12969234 12969518 -136547519 + Lx7 LINE L1 5597 5909 -1787 6 683 251 274 28 9 chr6 12969607 12969714 -136547323 + GA-rich Low_complexity Low_complexity 4 112 0 6 683 239 0 0 31 chr6 12969867 12969899 -136547138 + (TGGGGG)n Simple_repeat Simple_repeat 5 35 0 6 683 333 342 9 0 chr6 12970335 12970449 -136546588 + B3A SINE B2 2 116 -82 6 683 230 236 18 0 chr6 12970519 12970574 -136546463 + GA-rich Low_complexity Low_complexity 6 61 0 6 683 253 297 129 0 chr6 12970726 12970827 -136546210 - PB1D10 SINE Alu -3 114 1 6 683 352 374 14 0 chr6 12971747 12971886 -136545151 + LFSINE_Vert SINE SINE 15 155 -304 6 683 23 97 0 0 chr6 12972234 12972306 -136544731 + AT_rich Low_complexity Low_complexity 1 72 0 6 683 948 263 10 0 chr6 12972307 12972516 -136544521 - B3 SINE B2 -5 211 1 6 683 365 295 14 55 chr6 12972835 12972992 -136544045 - ORR1E LTR MaLR -12 367 226 6 683 366 171 71 35 chr6 12973007 12973092 -136543945 - ORR1E LTR MaLR -269 90 3 6 683 364 232 19 13 chr6 12973970 12974066 -136542971 + B1F SINE Alu 31 131 -18 6 684 249 339 28 149 chr6 12976322 12976537 -136540500 + B3A SINE B2 2 190 -8 6 684 346 317 175 38 chr6 12976568 12976968 -136540069 + L1MD3 LINE L1 7136 7590 -405 6 684 881 80 72 14 chr6 12977060 12977199 -136539838 + B1_Mus2 SINE Alu 1 147 0 6 684 289 95 32 0 chr6 12977205 12977268 -136539769 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 6 684 1550 329 51 27 chr6 12977269 12977975 -136539062 - Lx8 LINE L1 -419 7054 6332 6 684 1809 234 58 96 chr6 12978001 12978520 -136538517 + RLTR18B LTR ERVK 6 504 -8 7 684 387 0 0 0 chr6 12978524 12978567 -136538470 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 684 502 259 63 34 chr6 12978660 12978928 -136538109 - Lx9 LINE L1 -1 7643 7368 7 684 447 35 0 0 chr6 12978931 12978988 -136538049 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 684 1905 243 70 5 chr6 12979050 12979738 -136537299 - Lx8 LINE L1 -1604 6092 5357 6 684 418 292 192 11 chr6 12979815 12980075 -136536962 - L1MA9 LINE L1 -50 6262 5956 7 684 29 28 0 0 chr6 12980179 12980215 -136536822 + AT_rich Low_complexity Low_complexity 1 36 0 7 684 180 0 0 0 chr6 12980316 12980336 -136536701 + (A)n Simple_repeat Simple_repeat 1 20 0 7 684 502 114 11 11 chr6 12981586 12981675 -136535362 + (TA)n Simple_repeat Simple_repeat 1 89 0 7 684 284 384 101 47 chr6 12981942 12982368 -136534669 - MLT2B3 LTR ERVL -83 471 23 7 684 219 222 0 90 chr6 12982395 12982483 -136534554 + PB1D10 SINE Alu 51 124 -3 7 684 294 259 18 9 chr6 12982841 12982950 -136534087 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 7 684 343 278 211 65 chr6 12983046 12983184 -136533853 - MER20 DNA MER1_type -4 215 50 7 684 330 26 0 0 chr6 12983184 12983223 -136533814 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 684 343 278 211 65 chr6 12983223 12983269 -136533768 - MER20 DNA MER1_type -170 49 4 7 684 22 0 0 0 chr6 12984445 12984467 -136532570 + AT_rich Low_complexity Low_complexity 1 22 0 7 684 721 273 194 11 chr6 12984663 12985044 -136531993 - L1M2 LINE L1 -1213 4930 4480 7 684 225 0 0 0 chr6 12985048 12985073 -136531964 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 7 684 13341 59 1 1 chr6 12985083 12986773 -136530264 - L1Md_F2 LINE L1 -74 5809 4119 7 684 6258 49 10 5 chr6 12986773 12987570 -136529467 + L1Md_F2 LINE L1 5782 6582 0 7 684 540 30 0 0 chr6 12987636 12987702 -136529335 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 684 3734 127 12 0 chr6 12987852 12988434 -136528603 + Lx2 LINE L1 6407 6995 -2 7 684 4018 232 39 32 chr6 12988694 12989604 -136527433 + Lx6 LINE L1 6368 7283 -177 7 684 1275 313 37 27 chr6 12989624 12990251 -136526786 + L1MA6 LINE L1 5304 5936 -364 7 684 513 0 0 0 chr6 12991508 12991565 -136525472 + (TA)n Simple_repeat Simple_repeat 2 58 0 7 684 690 330 54 30 chr6 12992311 12992595 -136524442 + B4A SINE B4 1 275 -17 7 684 870 29 0 0 chr6 12992595 12992700 -136524337 + (CA)n Simple_repeat Simple_repeat 2 106 0 7 684 369 0 0 0 chr6 12992700 12992740 -136524297 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 684 502 330 64 85 chr6 12992740 12992757 -136524280 + B4 SINE B4 276 290 -2 7 684 300 196 9 18 chr6 12992798 12992867 -136524170 + GA-rich Low_complexity Low_complexity 4 72 0 7 684 1126 95 6 6 chr6 12992867 12993047 -136523990 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 7 684 300 196 9 18 chr6 12993047 12993086 -136523951 + polypurine Low_complexity Low_complexity 73 110 0 7 684 231 125 0 0 chr6 12993101 12993141 -136523896 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 7 684 807 72 63 0 chr6 12993416 12993527 -136523510 - MTB_Mm LTR MaLR -55 352 235 7 684 1594 224 106 32 chr6 12993560 12993652 -136523385 - RLTR20B3 LTR ERVK 0 577 485 7 684 186 43 0 0 chr6 12993652 12993675 -136523362 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 684 1594 224 106 32 chr6 12993675 12994112 -136522925 - RLTR20B3 LTR ERVK -93 484 10 7 684 24 67 0 0 chr6 12994233 12994278 -136522759 + AT_rich Low_complexity Low_complexity 1 45 0 7 684 254 259 86 0 chr6 12994468 12994526 -136522511 - ID4 SINE ID -10 73 11 7 684 10452 48 44 2 chr6 12994818 12996871 -136520166 - L1Md_F3 LINE L1 -12 6572 4413 7 684 12770 76 1 5 chr6 12996869 12999177 -136517860 - L1Md_F3 LINE L1 -2996 2887 631 7 684 207 0 0 0 chr6 12999181 12999204 -136517833 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7 684 376 394 37 53 chr6 13000618 13000862 -136516175 - MLT1E1A LTR MaLR -78 602 363 1 684 996 279 90 26 chr6 13001833 13002256 -136514781 - Lx7 LINE L1 -421 7275 6826 2 684 215 79 26 0 chr6 13002302 13002340 -136514697 + (CAAAAA)n Simple_repeat Simple_repeat 1 39 0 3 684 420 231 25 162 chr6 13003703 13003863 -136513174 + B1F SINE Alu 6 143 -6 4 684 1555 183 62 92 chr6 13004838 13005206 -136511831 - ORR1B1 LTR MaLR 0 394 38 5 684 301 265 186 12 chr6 13005206 13005378 -136511659 - L1MA6 LINE L1 -146 6154 5953 6 684 4630 180 64 28 chr6 13006855 13007963 -136509074 - Lx3C LINE L1 -101 6875 5820 7 684 411 310 35 65 chr6 13008964 13009133 -136507904 + RSINE1 SINE B4 2 165 0 8 684 30 0 0 0 chr6 13009149 13009179 -136507858 + AT_rich Low_complexity Low_complexity 1 30 0 9 684 381 22 0 0 chr6 13009599 13009645 -136507392 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 684 657 313 101 84 chr6 13009772 13010058 -136506979 - B4A SINE B4 0 292 2 1 684 414 357 57 49 chr6 13010104 13010454 -136506583 - L1MCc LINE L1 -4915 1508 1156 1 684 762 106 75 8 chr6 13010913 13011046 -136505991 - RMER17D2 LTR ERVK 0 809 668 1 684 1965 129 34 23 chr6 13011047 13011091 -136505946 - RMER17D2 LTR ERVK -455 354 311 1 684 1223 59 6 0 chr6 13011091 13011260 -136505777 + (GGGAGA)n Simple_repeat Simple_repeat 6 175 0 1 684 1965 129 34 23 chr6 13011260 13011565 -136505472 - RMER17D2 LTR ERVK -499 310 1 1 684 2782 77 8 3 chr6 13012332 13012708 -136504329 + L1_Mus1 LINE L1 6187 6564 -3 1 684 471 301 34 120 chr6 13013673 13013881 -136503156 + ORR1E LTR MaLR 2 191 -168 1 684 2161 169 51 71 chr6 13014204 13014518 -136502519 + RLTR19 LTR ERVK 1 326 -173 1 684 1230 100 0 0 chr6 13014518 13014698 -136502339 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 684 2161 169 51 71 chr6 13014698 13014722 -136502315 + RLTR19 LTR ERVK 327 328 -171 1 684 1260 89 0 0 chr6 13014722 13014902 -136502135 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 684 2161 169 51 71 chr6 13014902 13015071 -136501966 + RLTR19 LTR ERVK 329 499 0 1 684 185 327 0 0 chr6 13015164 13015219 -136501818 + MIRc SINE MIR 60 114 -154 2 684 635 332 60 11 chr6 13015277 13015542 -136501495 - B4A SINE B4 -12 280 3 2 684 1393 146 146 38 chr6 13016751 13016927 -136500110 - RMER17C LTR ERVK 0 410 195 2 684 636 14 0 0 chr6 13016927 13017000 -136500037 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 684 1393 146 146 38 chr6 13017000 13017193 -136499844 - RMER17C LTR ERVK -216 194 2 2 684 441 94 0 0 chr6 13017229 13017293 -136499744 - ORR1A2 LTR MaLR -263 64 1 2 684 541 130 0 0 chr6 13017293 13017370 -136499667 - ORR1A2-int LTR MaLR 0 1963 1887 2 684 306 0 0 0 chr6 13017671 13017705 -136499332 + (T)n Simple_repeat Simple_repeat 1 34 0 2 684 1051 189 97 18 chr6 13018175 13018473 -136498564 + ORR1A4 LTR MaLR 1 327 -40 2 684 764 276 73 4 chr6 13018639 13018872 -136498165 - RMER5 LTR ERV1 0 534 286 2 684 336 48 0 0 chr6 13018906 13018948 -136498089 + (A)n Simple_repeat Simple_repeat 1 42 0 2 684 27 29 0 0 chr6 13021057 13021091 -136495946 + AT_rich Low_complexity Low_complexity 1 34 0 2 684 415 323 120 91 chr6 13022694 13023361 -136493676 - L2 LINE L2 -745 2674 1978 3 684 1453 63 11 0 chr6 13023361 13023551 -136493486 + B2_Mm1t SINE B2 1 192 -1 3 684 415 323 120 91 chr6 13023551 13023935 -136493102 - L2 LINE L2 -1442 1977 1594 3 684 195 266 84 50 chr6 13024466 13024585 -136492452 - L2 LINE L2 -1930 1489 1367 3 684 25 31 0 0 chr6 13025554 13025586 -136491451 + AT_rich Low_complexity Low_complexity 1 32 0 3 684 1620 166 71 37 chr6 13025797 13026148 -136490889 - ORR1B2 LTR MaLR -4 363 1 3 684 1271 151 12 59 chr6 13026252 13026506 -136490531 + RLTR11B LTR ERVK 1 242 -211 3 684 1251 140 41 25 chr6 13026513 13026755 -136490282 + RLTR11B LTR ERVK 200 445 -8 3 684 275 303 35 141 chr6 13026826 13026968 -136490069 + PB1 SINE Alu 1 127 0 3 684 500 295 46 23 chr6 13026968 13026979 -136490058 + ID_B1 SINE B4 136 238 -54 3 684 1018 295 109 23 chr6 13029199 13029546 -136487491 + MTEa LTR MaLR 2 378 -1 3 684 769 357 38 9 chr6 13029664 13029837 -136487200 - MER21B LTR ERV1 -111 752 570 3 684 250 271 168 77 chr6 13029837 13030045 -136486992 - MER77 LTR ERVL -3 604 378 3 684 954 94 19 38 chr6 13030574 13030732 -136486305 + B2_Mm2 SINE B2 1 162 -54 4 684 207 0 0 0 chr6 13030732 13030755 -136486282 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 4 684 183 80 0 0 chr6 13030765 13030790 -136486247 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 4 684 592 254 80 55 chr6 13030790 13030820 -136486217 + B3 SINE B2 173 204 -12 4 684 21 0 0 0 chr6 13030825 13030846 -136486191 + AT_rich Low_complexity Low_complexity 1 21 0 4 684 631 301 37 5 chr6 13030953 13031167 -136485870 + ID_B1 SINE B4 3 223 -1 4 684 23 54 0 0 chr6 13031221 13031258 -136485779 + AT_rich Low_complexity Low_complexity 1 37 0 4 684 3575 57 11 6 chr6 13031826 13032300 -136484737 - L1_Mus3 LINE L1 -1 6637 6162 4 684 336 48 0 0 chr6 13032660 13032702 -136484335 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 684 339 25 0 0 chr6 13032702 13032741 -136484296 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 684 826 326 31 8 chr6 13032893 13033153 -136483884 - B4A SINE B4 -23 269 4 4 684 41 48 0 0 chr6 13033855 13033917 -136483120 + AT_rich Low_complexity Low_complexity 1 62 0 5 684 420 314 44 44 chr6 13036941 13037101 -136479936 + RSINE1 SINE B4 4 163 -2 5 684 216 86 0 0 chr6 13039855 13039890 -136477147 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 684 1092 49 35 0 chr6 13039904 13040046 -136476991 - B1_Mus2 SINE Alu 0 147 1 5 684 246 62 0 0 chr6 13040284 13040316 -136476721 + (T)n Simple_repeat Simple_repeat 1 32 0 5 684 8706 14 1 0 chr6 13040488 13041465 -136475572 + RLTR13A3 LTR ERVK 1 978 0 5 684 198 103 0 0 chr6 13041652 13041681 -136475356 + (T)n Simple_repeat Simple_repeat 1 29 0 5 684 384 297 158 104 chr6 13042130 13042389 -136474648 + B4A SINE B4 2 274 -18 5 684 1196 48 7 0 chr6 13043336 13043482 -136473555 + B1_Mm SINE Alu 1 147 0 5 684 247 24 95 0 chr6 13043482 13043524 -136473513 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 5 684 211 299 0 125 chr6 13043645 13043733 -136473304 + PB1D9 SINE Alu 35 111 -9 6 684 203 133 44 0 chr6 13043774 13043819 -136473218 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 684 1213 214 23 31 chr6 13043876 13044136 -136472901 - ORR1C2 LTR MaLR 0 384 127 6 684 4930 45 2 3 chr6 13044894 13045481 -136471556 + LTRIS_Mus LTR ERV1 2 587 0 6 684 312 224 37 73 chr6 13045688 13045770 -136471267 - ID4_ SINE ID -3 80 2 6 684 746 261 104 52 chr6 13047201 13047452 -136469585 - MTD LTR MaLR -155 264 1 6 684 1183 293 57 3 chr6 13047452 13047769 -136469268 + MTEb LTR MaLR 46 379 0 6 684 368 309 103 60 chr6 13048287 13048618 -136468419 + ORR1E LTR MaLR 15 359 0 6 684 201 39 0 0 chr6 13049455 13049481 -136467556 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 684 1336 102 162 8 chr6 13049848 13050114 -136466923 - RLTR10A LTR ERVK 0 411 105 6 684 184 386 45 70 chr6 13050607 13050763 -136466274 - L2 LINE L2 -2087 1332 1181 7 684 259 309 46 31 chr6 13050898 13051028 -136466009 - L2 LINE L2 -2452 967 836 7 684 396 0 0 0 chr6 13051087 13051131 -136465906 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 684 251 350 0 0 chr6 13051133 13051213 -136465824 - ID4_ SINE ID -3 80 1 7 684 181 294 75 96 chr6 13051261 13051355 -136465682 - MER5A DNA MER1_type -48 141 50 7 684 373 272 164 26 chr6 13052819 13053008 -136464029 + RMER15 LTR ERVL 356 570 -5 7 684 401 281 42 34 chr6 13054007 13054125 -136462912 - B1F1 SINE Alu -8 141 23 7 684 3038 57 0 0 chr6 13054558 13054961 -136462076 - L1_Mm LINE L1 -1763 4120 3718 7 684 420 121 0 78 chr6 13057119 13057209 -136459828 - L1_Mus1 LINE L1 -2 6565 6483 7 684 224 258 177 0 chr6 13057210 13057272 -136459765 - PB1D7 SINE Alu -37 83 11 7 684 303 28 0 0 chr6 13057371 13057407 -136459630 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 7 684 222 37 0 0 chr6 13057807 13057834 -136459203 + (CTA)n Simple_repeat Simple_repeat 3 29 0 8 684 511 290 12 47 chr6 13057850 13058020 -136459017 - RSINE1 SINE B4 0 165 2 8 684 354 291 75 168 chr6 13058634 13058956 -136458081 - B4A SINE B4 0 292 1 8 684 258 384 41 79 chr6 13058956 13059272 -136457765 - MLT1A0 LTR MaLR -61 304 1 8 684 203 154 58 0 chr6 13059493 13059545 -136457492 + (CAA)n Simple_repeat Simple_repeat 3 57 0 8 684 460 318 8 0 chr6 13059578 13059704 -136457333 - MTE-int LTR MaLR -334 1246 1120 8 684 396 250 52 35 chr6 13059846 13059962 -136457075 - B3A SINE B2 -77 118 1 8 684 433 196 39 10 chr6 13060101 13060204 -136456833 - RLTR11A2 LTR ERVK -14 513 408 8 684 324 233 0 0 chr6 13060204 13060277 -136456760 + L1Md_F2 LINE L1 528 600 -6016 8 684 3344 68 4 7 chr6 13060260 13060722 -136456315 + L1Md_F2 LINE L1 6098 6558 -24 8 684 315 0 0 0 chr6 13060722 13060757 -136456280 + (TAA)n Simple_repeat Simple_repeat 3 37 0 8 684 1069 279 64 33 chr6 13060760 13061149 -136455888 - RLTR11A2 LTR ERVK -109 418 18 8 684 2531 218 52 188 chr6 13061794 13062977 -136454060 + RMER1B Other Other 44 1066 0 9 684 738 271 44 6 chr6 13062985 13063167 -136453870 + B3 SINE B2 27 215 -1 9 684 239 385 72 0 chr6 13063698 13063781 -136453256 - LTR16C LTR ERVL -312 177 89 9 684 352 307 123 34 chr6 13063827 13064151 -136452886 + L1M2 LINE L1 3976 4328 -1552 9 684 239 235 75 0 chr6 13064170 13064261 -136452776 + ORR1D2 LTR MaLR 249 349 -25 9 684 399 98 0 0 chr6 13064279 13064340 -136452697 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 684 6053 197 2 11 chr6 13064353 13064977 -136452060 + Lx LINE L1 4612 5236 -647 9 684 579 40 0 0 chr6 13064977 13065051 -136451986 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 9 684 6990 130 7 6 chr6 13065051 13066470 -136450567 + Lx LINE L1 5237 6648 -6 9 684 597 284 81 65 chr6 13066486 13066945 -136450092 + L1MA4 LINE L1 5472 5937 -363 9 684 1056 203 135 40 chr6 13067208 13067511 -136449526 + IAPEY3_LTR LTR ERVK 1 332 0 9 684 1524 121 12 7 chr6 13067511 13067853 -136449184 + MMERVK10C-int LTR ERVK 1 422 -7159 9 684 743 137 0 0 chr6 13067960 13068084 -136448953 + MMERVK10C-int LTR ERVK 713 836 -6745 9 684 421 204 97 0 chr6 13068070 13068173 -136448864 + IAPEY3-int LTR ERVK 312 424 -4982 1 684 250 255 50 20 chr6 13068405 13068505 -136448532 + IAPEY3-int LTR ERVK 1462 1564 -6017 1 684 1283 121 112 0 chr6 13068571 13068795 -136448242 + IAP-d-int LTR ERVK 5007 5255 -1287 1 684 1558 129 57 26 chr6 13068795 13069122 -136447915 + IAPEY3-int LTR ERVK 6965 7338 -342 1 684 1199 196 74 12 chr6 13069139 13069475 -136447562 + IAPEz-int LTR ERVK 6125 6481 0 1 684 1080 210 135 40 chr6 13069475 13069778 -136447259 + IAPEY3_LTR LTR ERVK 1 332 0 1 684 720 296 93 30 chr6 13069804 13070340 -136446697 + L1MC2 LINE L1 5731 6300 -44 1 684 248 266 118 65 chr6 13070497 13070650 -136446387 + MER67C LTR ERV1 10 170 -541 1 684 551 312 87 10 chr6 13070718 13070925 -136446112 + MER67C LTR ERV1 271 493 -218 1 684 311 346 139 7 chr6 13072229 13072366 -136444671 + MER34A1 LTR ERV1 174 328 -259 1 684 317 340 27 34 chr6 13072577 13072723 -136444314 + RLTR14 LTR ERV1 226 370 -12 1 684 378 0 0 0 chr6 13073626 13073668 -136443369 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 684 2061 217 7 0 chr6 13074447 13074876 -136442161 - MERVK26-int LTR ERVK -2173 4746 4315 1 684 3556 149 88 124 chr6 13074882 13075822 -136441215 + RMER17A2 LTR ERVK 1 906 0 1 684 4180 231 39 17 chr6 13075829 13076869 -136440168 - MERVK26-int LTR ERVK -2610 4309 3248 1 684 808 184 108 7 chr6 13076869 13076926 -136440111 + RLTR20B3 LTR ERVK 415 471 -106 1 684 279 0 0 0 chr6 13076926 13076957 -136440080 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 684 808 184 108 7 chr6 13076957 13077047 -136439990 + RLTR20B3 LTR ERVK 472 575 -2 1 684 2519 199 17 48 chr6 13077047 13077584 -136439453 + ORR1A4-int LTR MaLR 89 608 -1355 1 684 4217 164 99 96 chr6 13077584 13078683 -136438354 + RLTR25A LTR ERVK 1 1103 0 1 684 945 170 100 76 chr6 13078741 13078951 -136438086 + MT2B LTR ERVL 73 287 -314 1 684 3722 160 51 11 chr6 13078910 13079982 -136437055 + ORR1A4-int LTR MaLR 328 1772 -191 1 684 1461 156 116 63 chr6 13080425 13080868 -136436169 + ORR1A4 LTR MaLR 1 386 -8 1 684 3845 232 27 51 chr6 13080875 13081379 -136435658 - MERVK26-int LTR ERVK -3698 3221 2731 1 684 732 110 101 14 chr6 13081379 13081517 -136435520 - L1_Mus3 LINE L1 -15 6623 6474 1 684 3845 232 27 51 chr6 13081517 13081968 -136435069 - MERVK26-int LTR ERVK -4189 2730 2289 1 684 2355 273 33 16 chr6 13082006 13082712 -136434325 - MERVK26-int LTR ERVK -4734 2185 1468 1 684 659 239 6 33 chr6 13082725 13082907 -136434130 - MERVK26-int LTR ERVK -5493 1426 1250 1 684 1055 258 55 89 chr6 13082975 13083219 -136433818 - MERVK26-int LTR ERVK -6200 719 472 1 684 399 41 0 0 chr6 13083219 13083268 -136433769 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 1 684 1055 258 55 89 chr6 13083268 13083475 -136433562 - MERVK26-int LTR ERVK -6448 471 290 1 684 1212 69 74 6 chr6 13083475 13083650 -136433387 - B2_Mm2 SINE B2 -8 187 1 1 684 1055 258 55 89 chr6 13083650 13083781 -136433256 - MERVK26-int LTR ERVK -6630 289 156 1 684 393 316 80 0 chr6 13083783 13083995 -136433042 + MERVK26-int LTR ERVK 645 873 -6046 1 684 959 230 73 88 chr6 13084297 13084626 -136432411 - RMER20B LTR ERVK -214 413 90 1 684 318 313 0 25 chr6 13085474 13085565 -136431472 + PB1 SINE Alu 1 76 -51 1 684 276 30 0 0 chr6 13086392 13086425 -136430612 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 684 779 314 100 68 chr6 13087527 13087641 -136429396 + RMER5 LTR ERV1 33 136 -398 1 684 411 341 0 29 chr6 13087641 13087780 -136429257 - B1F SINE Alu -12 137 3 1 684 779 314 100 68 chr6 13087780 13088134 -136428903 + RMER5 LTR ERV1 137 516 -18 1 684 26 0 0 0 chr6 13089654 13089680 -136427357 + AT_rich Low_complexity Low_complexity 1 26 0 1 684 3905 76 47 2 chr6 13089680 13090218 -136426819 - L1Md_F2 LINE L1 -13 6569 6008 1 684 524 243 17 2 chr6 13090393 13090545 -136426492 + Lx7 LINE L1 5373 5551 -329 1 684 618 308 173 16 chr6 13091437 13091813 -136425224 + Lx7 LINE L1 6880 7314 -382 1 684 4120 251 97 20 chr6 13091834 13091997 -136425040 + Lx7 LINE L1 5662 5819 -1877 1 684 2799 85 48 13 chr6 13091997 13092390 -136424647 - MTB_Mm LTR MaLR 0 407 1 1 684 4120 247 81 15 chr6 13092390 13093896 -136423141 + Lx7 LINE L1 5820 7437 -23 1 684 2049 132 9 55 chr6 13094023 13094368 -136422669 + ORR1A4 LTR MaLR 1 329 0 1 684 22 70 0 0 chr6 13094912 13094955 -136422082 + AT_rich Low_complexity Low_complexity 1 43 0 1 684 282 56 0 0 chr6 13094995 13095031 -136422006 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 684 907 253 224 23 chr6 13095077 13095425 -136421612 + MTD LTR MaLR 1 418 -1 1 684 398 217 214 15 chr6 13095473 13095550 -136421487 - RLTR20B3 LTR ERVK 0 577 485 1 684 441 0 0 0 chr6 13095550 13095599 -136421438 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 684 398 217 214 15 chr6 13095599 13095652 -136421385 - RLTR20B3 LTR ERVK -93 484 423 1 684 7798 46 2 1 chr6 13095673 13096728 -136420309 - L1Md_F3 LINE L1 -2 6582 5527 1 684 1754 168 47 104 chr6 13096728 13097199 -136419838 - RLTR20B3 LTR ERVK -133 444 1 1 684 486 257 43 15 chr6 13097419 13097558 -136419479 + B3 SINE B2 76 216 0 1 684 435 247 21 0 chr6 13097752 13097845 -136419192 - ID_B1 SINE B4 -21 203 109 1 684 226 205 57 57 chr6 13097767 13097855 -136419182 + YREP_Mm Unknown Unknown 211 298 -1514 1 684 257 355 37 9 chr6 13097938 13098046 -136418991 + MTE2a LTR MaLR 10 120 -259 1 684 762 343 77 35 chr6 13097949 13098441 -136418596 + MT2A LTR ERVL 20 532 -1 1 684 694 118 7 75 chr6 13098456 13098603 -136418434 + Lx3C LINE L1 6838 6974 -2 1 684 28 48 0 0 chr6 13098837 13098879 -136418158 + AT_rich Low_complexity Low_complexity 1 42 0 1 684 315 154 0 0 chr6 13099655 13099720 -136417317 + CT-rich Low_complexity Low_complexity 2 66 0 1 684 740 162 6 86 chr6 13099721 13099883 -136417154 - B1_Mur3 SINE Alu 0 149 1 1 684 5575 155 10 60 chr6 13100499 13101654 -136415383 + L1_Mm LINE L1 4065 5162 -721 1 684 385 255 0 56 chr6 13101877 13101985 -136415052 + PB1D10 SINE Alu 14 115 -2 1 684 995 59 7 0 chr6 13102537 13102672 -136414365 + (TC)n Simple_repeat Simple_repeat 1 136 0 1 684 501 47 0 0 chr6 13102674 13102738 -136414299 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 684 225 333 0 0 chr6 13103611 13103661 -136413376 - ID4_ SINE ID 0 83 34 1 684 970 168 355 20 chr6 13103661 13104002 -136413035 + RMER6C LTR ERVK 1 455 -235 1 684 443 158 81 2 chr6 13104002 13104502 -136412535 + (CAGTG)n Simple_repeat Simple_repeat 1 539 0 1 684 1142 236 12 63 chr6 13104548 13104882 -136412155 + RMER6C LTR ERVK 327 643 -47 1 684 1052 293 56 11 chr6 13105314 13105673 -136411364 - Lx8 LINE L1 -128 7345 6971 1 684 285 223 26 197 chr6 13105861 13105978 -136411059 - URR1A DNA MER1_type -84 142 46 1 85 237 309 0 80 chr6 13107125 13107213 -136409824 - PB1D10 SINE Alu -1 116 36 1 685 23 0 0 0 chr6 13108336 13108359 -136408678 + AT_rich Low_complexity Low_complexity 1 23 0 1 685 378 329 28 0 chr6 13108691 13108834 -136408203 - B1F1 SINE Alu 0 149 3 1 685 1210 106 39 0 chr6 13109093 13109273 -136407764 + B2_Mm2 SINE B2 2 188 -7 1 685 202 339 16 50 chr6 13109458 13109579 -136407458 + MER91B DNA Tip100 5 121 -69 1 685 202 62 0 59 chr6 13109928 13109962 -136407075 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 1 685 725 351 48 43 chr6 13109976 13110079 -136406958 + MTE2a LTR MaLR 10 116 -303 1 685 2106 45 4 11 chr6 13110079 13110348 -136406689 - L1Md_F2 LINE L1 0 6582 6316 1 685 1111 274 34 40 chr6 13110348 13110637 -136406400 + MTE2a LTR MaLR 86 403 -16 1 685 310 211 0 0 chr6 13110692 13110744 -136406293 - RSINE1 SINE B4 -111 54 3 1 685 451 311 44 0 chr6 13111092 13111227 -136405810 + ID_B1 SINE B4 82 222 -2 1 685 937 241 42 109 chr6 13111308 13111550 -136405487 + Lx9 LINE L1 7212 7459 -185 1 685 900 28 0 0 chr6 13111550 13111657 -136405380 + (TTCC)n Simple_repeat Simple_repeat 4 110 0 1 685 1051 241 42 109 chr6 13111657 13111871 -136405166 + Lx9 LINE L1 7460 7637 -7 1 685 645 225 7 7 chr6 13112010 13112153 -136404884 - B1_Mur1 SINE Alu -4 145 3 1 685 206 116 23 0 chr6 13112673 13112716 -136404321 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 1 685 270 290 16 0 chr6 13113574 13113636 -136403401 - tRNA-Ala-GCY_ tRNA tRNA -8 67 5 1 685 24 32 0 0 chr6 13113669 13113700 -136403337 + AT_rich Low_complexity Low_complexity 1 31 0 1 685 1119 252 86 72 chr6 13113944 13114392 -136402645 + RLTR20B3 LTR ERVK 27 471 -106 1 685 282 29 0 0 chr6 13114392 13114427 -136402610 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 685 1119 259 82 92 chr6 13114427 13114502 -136402535 + RLTR20B3 LTR ERVK 448 527 -1 1 685 468 0 0 0 chr6 13114563 13114615 -136402422 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 685 367 347 50 0 chr6 13114615 13114736 -136402301 - RSINE1 SINE B4 -36 129 3 1 685 866 144 21 108 chr6 13114809 13114995 -136402042 + ORR1C2 LTR MaLR 1 170 -214 1 685 1176 41 0 0 chr6 13114996 13115142 -136401895 + (TCTCCC)n Simple_repeat Simple_repeat 3 148 0 1 685 335 218 27 0 chr6 13115333 13115480 -136401557 + CT-rich Low_complexity Low_complexity 2 152 0 1 685 742 113 51 36 chr6 13115696 13115834 -136401203 + B2_Mm2 SINE B2 55 194 -1 1 685 1687 67 9 0 chr6 13116960 13117184 -136399853 - L1_Mus2 LINE L1 0 6566 6341 1 685 213 349 52 52 chr6 13117237 13117373 -136399664 + L2b LINE L2 3230 3365 -10 1 685 180 0 0 0 chr6 13118365 13118385 -136398652 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1 685 318 345 0 22 chr6 13118385 13118474 -136398563 - PB1D10 SINE Alu -8 109 23 1 685 720 230 62 31 chr6 13119534 13119727 -136397310 + B3 SINE B2 1 199 -17 1 685 405 0 0 0 chr6 13120243 13120288 -136396749 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 685 501 273 36 0 chr6 13120321 13120431 -136396606 - B1_Mur4 SINE Alu -35 115 2 1 685 342 320 82 0 chr6 13120440 13120587 -136396450 - B3 SINE B2 -1 215 57 1 685 989 90 30 0 chr6 13122817 13122950 -136394087 + B1_Mm SINE Alu 1 137 -10 1 685 266 0 0 29 chr6 13122950 13122985 -136394052 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 685 404 281 156 55 chr6 13123157 13123432 -136393605 + MLT1B LTR MaLR 11 313 -77 1 685 222 345 164 0 chr6 13124381 13124491 -136392546 - B1F1 SINE Alu -20 129 2 1 685 236 325 48 0 chr6 13124665 13124748 -136392289 + PB1D10 SINE Alu 25 111 -6 1 685 24 32 0 0 chr6 13124789 13124820 -136392217 + AT_rich Low_complexity Low_complexity 1 31 0 1 685 22 35 0 0 chr6 13125045 13125074 -136391963 + AT_rich Low_complexity Low_complexity 1 29 0 1 685 665 35 23 0 chr6 13125526 13125613 -136391424 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 1 685 1102 91 0 0 chr6 13125617 13125760 -136391277 - B1_Mus1 SINE Alu -5 143 1 1 685 1258 279 47 0 chr6 13125772 13126091 -136390946 - Lx6 LINE L1 -179 7281 6948 1 685 21 36 0 0 chr6 13126892 13126920 -136390117 + AT_rich Low_complexity Low_complexity 1 28 0 1 685 267 292 72 65 chr6 13128767 13128906 -136388131 + MT2B LTR ERVL 139 278 -323 1 685 720 156 41 0 chr6 13128806 13128920 -136388117 + B1_Mus2 SINE Alu 16 134 -13 1 685 351 0 0 0 chr6 13128920 13128959 -136388078 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 2 685 37 0 0 0 chr6 13129848 13129885 -136387152 + AT_rich Low_complexity Low_complexity 1 37 0 2 685 366 306 111 0 chr6 13131068 13131176 -136385861 - ID_B1 SINE B4 -12 212 93 2 685 207 0 0 0 chr6 13132792 13132815 -136384222 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 685 1014 110 0 0 chr6 13132818 13132954 -136384083 - B1_Mus1 SINE Alu -11 137 2 2 685 404 320 54 127 chr6 13133570 13133939 -136383098 + L1MC4a LINE L1 5937 6278 -1604 2 685 205 205 0 0 chr6 13135643 13135682 -136381355 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 685 228 285 24 33 chr6 13136423 13136538 -136380499 - L2b LINE L2 -359 3067 2958 2 685 915 220 35 30 chr6 13138223 13138420 -136378617 - B3 SINE B2 0 216 19 2 685 231 318 109 38 chr6 13138564 13138747 -136378290 - MamRep605 Unknown Unknown -245 631 436 2 685 593 90 11 0 chr6 13138822 13138911 -136378126 + (GAAA)n Simple_repeat Simple_repeat 4 93 0 2 685 471 259 18 18 chr6 13139510 13139620 -136377417 - PB1D10 SINE Alu -2 115 6 2 685 228 129 48 16 chr6 13140286 13140349 -136376688 - Lx8 LINE L1 -1 7472 7408 2 685 232 327 101 19 chr6 13141153 13141312 -136375725 + L2a LINE L2 3216 3387 -39 2 685 2334 102 12 0 chr6 13141704 13142027 -136375010 + ORR1A2 LTR MaLR 1 327 0 2 685 23 54 0 0 chr6 13142132 13142169 -136374868 + AT_rich Low_complexity Low_complexity 1 37 0 2 685 25 31 0 0 chr6 13142707 13142739 -136374298 + AT_rich Low_complexity Low_complexity 1 32 0 2 685 21 0 0 0 chr6 13142758 13142779 -136374258 + AT_rich Low_complexity Low_complexity 1 21 0 2 685 21 36 0 0 chr6 13143305 13143333 -136373704 + AT_rich Low_complexity Low_complexity 1 28 0 2 685 24 0 0 0 chr6 13143464 13143488 -136373549 + AT_rich Low_complexity Low_complexity 1 24 0 2 685 993 126 17 0 chr6 13144066 13144241 -136372796 + (TC)n Simple_repeat Simple_repeat 1 178 0 2 685 691 208 8 0 chr6 13144271 13144396 -136372641 - B1_Mus1 SINE Alu -21 127 2 2 685 227 262 81 8 chr6 13144297 13144420 -136372617 - ORR1B1-int LTR MaLR -762 747 616 2 685 3014 133 12 81 chr6 13146812 13147383 -136369654 - Lx4A LINE L1 0 7058 6527 2 685 306 125 0 0 chr6 13147388 13147436 -136369601 + (T)n Simple_repeat Simple_repeat 1 48 0 2 685 1062 82 0 20 chr6 13147436 13147586 -136369451 - B1_Mm SINE Alu 0 147 1 2 685 626 284 77 9 chr6 13148252 13148472 -136368565 + Tigger5 DNA MER2_type 8 242 -2164 2 685 264 360 0 20 chr6 13148466 13148568 -136368469 + Tigger5 DNA MER2_type 2306 2405 -1 2 685 31614 94 7 6 chr6 13148727 13153949 -136363088 + L1Md_F2 LINE L1 362 5586 -297 2 685 7423 70 15 4 chr6 13153950 13154929 -136362108 + L1Md_F2 LINE L1 5588 6577 -5 2 685 761 277 44 0 chr6 13155181 13155387 -136361650 + B3 SINE B2 2 216 0 2 685 21 36 0 0 chr6 13155387 13155415 -136361622 + AT_rich Low_complexity Low_complexity 1 28 0 2 685 216 0 0 0 chr6 13155493 13155517 -136361520 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 685 756 0 0 0 chr6 13156032 13156116 -136360921 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 2 685 576 0 0 0 chr6 13156116 13156180 -136360857 + (GGGA)n Simple_repeat Simple_repeat 1 64 0 2 685 407 258 13 5 chr6 13157057 13157158 -136359879 - PB1D10 SINE Alu -34 115 12 2 685 28 29 0 0 chr6 13157574 13157609 -136359428 + AT_rich Low_complexity Low_complexity 1 35 0 2 685 198 0 0 0 chr6 13158122 13158144 -136358893 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 685 2580 79 43 58 chr6 13158537 13158954 -136358083 + RLTR10A LTR ERVK 1 411 0 2 685 419 205 0 0 chr6 13159102 13159180 -136357857 + L1MC LINE L1 5541 5618 -715 2 685 426 283 0 50 chr6 13159298 13159417 -136357620 - B1F SINE Alu -3 145 32 2 685 1934 235 63 2 chr6 13159860 13160297 -136356740 - Lx6 LINE L1 -4 7456 7001 2 685 25 0 0 0 chr6 13160599 13160624 -136356413 + AT_rich Low_complexity Low_complexity 1 25 0 2 685 266 292 134 55 chr6 13160675 13161092 -136355945 - L1MD LINE L1 -3399 2747 2298 2 685 334 346 19 12 chr6 13162154 13162315 -136354722 - L1MD3 LINE L1 0 7995 7834 2 685 4891 109 63 48 chr6 13162335 13163380 -136353657 + L1Md_F LINE L1 500 1513 -4370 2 685 1068 95 0 13 chr6 13163380 13163529 -136353508 - B1_Mm SINE Alu 0 147 1 2 685 4891 83 14 117 chr6 13163529 13164043 -136352994 + L1Md_F LINE L1 1514 2024 -3859 2 685 3498 66 0 0 chr6 13164043 13164483 -136352554 + L1_Mus1 LINE L1 6112 6551 -16 2 685 306 0 0 0 chr6 13164486 13164520 -136352517 + (TAA)n Simple_repeat Simple_repeat 3 36 0 2 685 355 363 45 33 chr6 13164552 13164794 -136352243 - L1MD3 LINE L1 -204 7791 7547 2 685 817 279 10 0 chr6 13165926 13166127 -136350910 + B3 SINE B2 1 203 -13 2 685 33 25 0 0 chr6 13166149 13166189 -136350848 + AT_rich Low_complexity Low_complexity 1 40 0 2 685 29 101 0 0 chr6 13166796 13166895 -136350142 + AT_rich Low_complexity Low_complexity 1 99 0 2 685 343 273 0 0 chr6 13168821 13168898 -136348139 + ID4 SINE ID 3 79 -4 2 685 423 0 0 0 chr6 13168898 13168945 -136348092 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 685 871 307 31 38 chr6 13169132 13169393 -136347644 + B4A SINE B4 4 262 -30 2 685 765 185 0 0 chr6 13169401 13169579 -136347458 + CT-rich Low_complexity Low_complexity 2 179 0 2 685 276 30 0 0 chr6 13169579 13169612 -136347425 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 685 1209 61 0 0 chr6 13170796 13170943 -136346094 + B1_Mus2 SINE Alu 1 147 0 2 685 293 116 42 59 chr6 13171113 13171232 -136345805 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 2 685 251 379 0 28 chr6 13171246 13171352 -136345685 - B4A SINE B4 -188 104 2 2 685 24 77 0 0 chr6 13171520 13171572 -136345465 + AT_rich Low_complexity Low_complexity 1 52 0 2 685 862 250 8 47 chr6 13171738 13171994 -136345043 - Lx6 LINE L1 -26 7434 7189 2 685 365 263 103 21 chr6 13172489 13172586 -136344451 + PB1D10 SINE Alu 7 111 -6 2 685 979 284 78 31 chr6 13172590 13173381 -136343656 + L1MB5 LINE L1 5159 5988 -186 2 685 251 284 35 20 chr6 13173618 13173778 -136343259 + L1MA4A LINE L1 5984 6155 -148 2 685 279 0 0 0 chr6 13173988 13174019 -136343018 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2 685 316 328 50 50 chr6 13175262 13175403 -136341634 - PB1D10 SINE Alu -9 141 1 2 685 569 265 206 0 chr6 13175471 13175641 -136341396 - B4 SINE B4 -76 216 12 2 685 180 0 0 0 chr6 13175689 13175709 -136341328 + (CTTTG)n Simple_repeat Simple_repeat 3 22 0 2 685 212 238 0 0 chr6 13175983 13176025 -136341012 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 685 189 0 0 0 chr6 13176471 13176492 -136340545 + (A)n Simple_repeat Simple_repeat 1 21 0 2 685 10123 231 56 121 chr6 13176671 13177074 -136339963 + Lx6 LINE L1 889 1259 -6469 2 685 438 20 0 0 chr6 13177074 13177125 -136339912 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 685 10123 182 104 210 chr6 13177125 13177639 -136339398 + Lx6 LINE L1 1260 2017 -3860 2 685 207 100 0 0 chr6 13177639 13177669 -136339368 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 685 10123 182 104 210 chr6 13177669 13177943 -136339094 + Lx6 LINE L1 2018 2315 -3562 2 685 3314 48 2 0 chr6 13177943 13178338 -136338699 + MTA_Mm LTR MaLR 1 396 0 2 685 10123 183 102 196 chr6 13178338 13183016 -136334021 + Lx6 LINE L1 2316 6212 -1248 2 685 1345 294 26 45 chr6 13183100 13183728 -136333309 + Lx6 LINE L1 6479 7433 -27 2 685 249 350 73 43 chr6 13184272 13184436 -136332601 + MIR SINE MIR 24 192 -70 2 685 558 43 0 0 chr6 13184977 13185046 -136331991 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 685 252 0 0 0 chr6 13186136 13186164 -136330873 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 685 442 0 0 0 chr6 13186164 13186216 -136330821 - B1_Mur4 SINE Alu -10 140 89 2 685 276 30 0 0 chr6 13186307 13186340 -136330697 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 685 1107 65 0 0 chr6 13186468 13186606 -136330431 + B1_Mus1 SINE Alu 2 139 -9 2 685 3566 222 73 23 chr6 13187264 13188151 -136328886 - Lx5 LINE L1 -8 7042 6089 2 685 1334 174 5 0 chr6 13188408 13188632 -136328405 - URR1A DNA MER1_type 0 226 2 2 685 237 33 0 0 chr6 13189449 13189479 -136327558 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 685 763 275 34 61 chr6 13189733 13189996 -136327041 + RMER15 LTR ERVL 307 562 -13 2 685 488 380 0 12 chr6 13190271 13190436 -136326601 + RSINE1 SINE B4 2 164 -1 2 685 1153 103 13 19 chr6 13192405 13192599 -136324438 - B2_Mm2 SINE B2 0 193 2 2 685 2652 183 123 22 chr6 13192611 13192910 -136324127 - RMER6C LTR ERVK 0 690 378 2 685 545 42 14 0 chr6 13192910 13192982 -136324055 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 685 2652 183 123 22 chr6 13192982 13193309 -136323728 - RMER6C LTR ERVK -313 377 2 2 685 410 301 41 39 chr6 13193396 13193634 -136323403 - L1M4c LINE L1 -3713 2669 2434 2 685 312 91 0 0 chr6 13193647 13193691 -136323346 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 685 389 312 143 19 chr6 13193706 13193971 -136323066 - L1M4c LINE L1 -4008 2376 2079 2 685 1116 327 51 24 chr6 13194166 13194758 -136322279 - Lx8 LINE L1 -302 7171 6564 2 685 206 128 0 25 chr6 13194888 13194928 -136322109 + CT-rich Low_complexity Low_complexity 1 39 0 2 685 3268 309 104 60 chr6 13195203 13196681 -136320356 + MTE-int LTR MaLR 25 1568 -12 2 685 1015 243 19 62 chr6 13196693 13196952 -136320085 + MT2B LTR ERVL 253 500 -101 2 685 2217 189 65 23 chr6 13196951 13197428 -136319609 - RMER20A LTR ERVK -6 510 14 2 685 539 187 9 0 chr6 13197429 13197536 -136319501 + MT2B LTR ERVL 494 601 0 2 685 297 246 18 0 chr6 13197748 13197805 -136319232 - B1F1 SINE Alu -88 61 4 2 685 544 317 22 16 chr6 13198046 13198229 -136318808 - B3A SINE B2 -10 188 5 2 685 7414 118 4 41 chr6 13199949 13201734 -136315303 + L1_Mus1 LINE L1 4866 6565 -2 2 685 225 0 0 0 chr6 13201734 13201759 -136315278 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 685 425 270 83 16 chr6 13201764 13201956 -136315081 - Arthur1 DNA Tip100 -217 3730 3526 2 685 2217 202 72 22 chr6 13201969 13202466 -136314571 + RMER5 LTR ERV1 5 526 -8 2 685 597 28 0 0 chr6 13202879 13202950 -136314087 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 685 1053 111 77 26 chr6 13203730 13203925 -136313112 - Lx LINE L1 -2 6652 6448 3 685 671 243 37 60 chr6 13204795 13205010 -136312027 + B3 SINE B2 4 213 -3 3 685 24 0 0 0 chr6 13205071 13205095 -136311942 + AT_rich Low_complexity Low_complexity 1 24 0 3 685 327 267 44 0 chr6 13205260 13205350 -136311687 + MTD LTR MaLR 240 333 -86 3 685 368 172 118 29 chr6 13205373 13205475 -136311562 + MTD LTR MaLR 307 417 -2 3 685 263 0 81 0 chr6 13205747 13205784 -136311253 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 3 685 2448 7 0 4 chr6 13205850 13206128 -136310909 + L1Md_A LINE L1 6306 6582 0 3 685 270 0 0 0 chr6 13207271 13207301 -136309736 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 685 6647 70 19 0 chr6 13207301 13208209 -136308828 - L1_Mus2 LINE L1 -1 6565 5641 3 685 1180 130 11 0 chr6 13208382 13208566 -136308471 - B2_Mm2 SINE B2 -4 191 6 3 685 32 43 0 0 chr6 13208793 13208839 -136308198 + AT_rich Low_complexity Low_complexity 1 46 0 3 685 297 128 0 0 chr6 13208883 13208930 -136308107 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 3 685 584 309 26 0 chr6 13208932 13209084 -136307953 - RSINE1 SINE B4 -8 157 2 3 685 1239 41 0 0 chr6 13209923 13210070 -136306967 - B1_Mus2 SINE Alu 0 147 1 3 685 234 207 0 47 chr6 13211181 13211360 -136305677 + (TATAA)n Simple_repeat Simple_repeat 1 170 0 3 685 22 35 0 0 chr6 13211777 13211806 -136305231 + AT_rich Low_complexity Low_complexity 1 29 0 3 685 237 240 47 19 chr6 13211809 13211915 -136305122 - Lx8 LINE L1 -8 7465 7357 3 685 2864 265 126 47 chr6 13211915 13213069 -136303968 - Lx8 LINE L1 -54 7419 6191 3 685 216 0 0 0 chr6 13213069 13213093 -136303944 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 685 2864 265 126 47 chr6 13213093 13213162 -136303875 - Lx8 LINE L1 -1283 6190 6100 3 685 333 339 69 17 chr6 13215634 13215808 -136301229 - MER5A DNA MER1_type -6 183 1 3 685 39452 5 0 0 chr6 13215921 13222298 -136294739 - L1Md_A LINE L1 0 6582 205 3 685 31657 89 11 7 chr6 13222307 13228461 -136288576 - L1Md_F2 LINE L1 -11 6571 389 3 685 206 316 74 0 chr6 13228766 13228861 -136288176 - MER5A DNA MER1_type -82 107 6 3 685 354 332 54 73 chr6 13231658 13231863 -136285174 - MT2A LTR ERVL -102 431 231 3 685 269 217 14 0 chr6 13231927 13231996 -136285041 + T-rich Low_complexity Low_complexity 1 70 0 3 685 512 281 216 11 chr6 13231996 13232326 -136284711 - L1M2 LINE L1 -1071 5072 4690 3 685 702 84 0 0 chr6 13232326 13232433 -136284604 + (TC)n Simple_repeat Simple_repeat 2 108 0 3 685 512 281 216 11 chr6 13232433 13232670 -136284367 - L1M2 LINE L1 -1454 4689 4388 3 685 842 235 91 118 chr6 13233076 13233282 -136283755 - ORR1D1 LTR MaLR 0 374 156 3 685 321 26 0 0 chr6 13233282 13233320 -136283717 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 685 842 235 91 118 chr6 13233320 13233353 -136283684 - ORR1D1 LTR MaLR -219 155 141 3 685 3332 100 15 2 chr6 13233353 13233815 -136283222 - Lx3A LINE L1 -4 6977 6510 3 685 842 235 91 118 chr6 13233815 13233946 -136283091 - ORR1D1 LTR MaLR -234 140 13 3 685 1101 23 0 0 chr6 13234313 13234445 -136282592 + (GA)n Simple_repeat Simple_repeat 1 132 0 3 685 25 31 0 0 chr6 13234687 13234719 -136282318 + AT_rich Low_complexity Low_complexity 1 32 0 3 685 495 0 0 0 chr6 13234719 13234774 -136282263 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 685 405 0 0 0 chr6 13234774 13234818 -136282219 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 685 2032 35 0 34 chr6 13234910 13235174 -136281863 + L1Md_F2 LINE L1 6327 6581 -1 3 685 508 326 56 0 chr6 13235891 13236035 -136281002 - RSINE1 SINE B4 -8 157 6 3 685 2476 172 68 4 chr6 13236099 13236555 -136280482 - Lx5 LINE L1 -391 6659 6175 3 685 876 223 21 1 chr6 13236595 13236826 -136280211 + Lx5 LINE L1 6729 7007 -51 3 685 393 179 95 35 chr6 13236869 13236985 -136280052 + Lx5 LINE L1 6929 7051 -7 3 686 185 370 48 39 chr6 13238373 13238581 -136278456 - L2b LINE L2 -28 3359 3150 3 686 366 313 129 4 chr6 13238629 13238856 -136278181 - MLT1G3 LTR MaLR -61 530 264 3 686 226 336 59 76 chr6 13239026 13239239 -136277798 - L2b LINE L2 -258 3117 2907 3 686 690 315 69 69 chr6 13239415 13239514 -136277523 - MER77 LTR ERVL -16 591 495 3 686 1054 154 80 24 chr6 13239514 13239727 -136277310 + URR1A DNA MER1_type 2 226 0 3 686 690 315 69 69 chr6 13239727 13239944 -136277093 - MER77 LTR ERVL -113 494 275 3 686 308 352 82 33 chr6 13239956 13240138 -136276899 - MER77 LTR ERVL -367 240 50 3 686 499 245 36 23 chr6 13242094 13242236 -136274801 - Lx7 LINE L1 -360 7336 7205 3 686 1344 192 156 6 chr6 13242236 13242551 -136274486 + ORR1B1 LTR MaLR 1 362 -32 3 686 395 174 0 0 chr6 13242725 13242794 -136274243 + ORR1B2 LTR MaLR 297 365 -2 3 686 1063 261 112 20 chr6 13242839 13243230 -136273807 - Lx7 LINE L1 -586 7110 6684 3 686 360 64 0 0 chr6 13243609 13243656 -136273381 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 686 395 94 0 30 chr6 13244335 13244401 -136272636 + (TTAGGG)n Simple_repeat Simple_repeat 1 64 0 3 686 296 250 0 0 chr6 13244401 13244461 -136272576 - MLT1K LTR MaLR -348 247 188 3 686 244 186 0 63 chr6 13245442 13245521 -136271516 - MIRb SINE MIR -2 260 190 3 686 574 291 87 66 chr6 13245709 13246126 -136270911 - MLT1C LTR MaLR 0 467 1 3 686 216 345 35 41 chr6 13247657 13247802 -136269235 + MER5A DNA MER1_type 17 160 -29 3 686 429 81 46 0 chr6 13248419 13248506 -136268531 + (TCTCTG)n Simple_repeat Simple_repeat 6 96 0 3 686 343 331 33 92 chr6 13248607 13248913 -136268124 + B4A SINE B4 5 292 0 3 686 501 314 7 28 chr6 13249659 13249803 -136267234 - ID_B1 SINE B4 0 224 84 3 686 1725 226 11 25 chr6 13249887 13250254 -136266783 - RLTR14 LTR ERV1 -20 362 1 3 686 239 337 23 11 chr6 13250390 13250477 -136266560 - MIRc SINE MIR -137 131 44 3 686 324 0 0 0 chr6 13250548 13250584 -136266453 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 686 245 29 0 29 chr6 13251117 13251152 -136265885 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 686 312 376 67 71 chr6 13252037 13252306 -136264731 - B4 SINE B4 -1 291 24 3 686 417 225 182 8 chr6 13252419 13252540 -136264497 + B1_Mur1 SINE Alu 2 143 -6 3 686 306 167 0 0 chr6 13252573 13252633 -136264404 + GA-rich Low_complexity Low_complexity 4 63 0 3 686 712 124 15 37 chr6 13253104 13253238 -136263799 - Lx LINE L1 -3 6651 6521 3 686 3237 59 16 2 chr6 13253342 13253767 -136263270 - L1Md_F2 LINE L1 0 6582 6152 3 686 462 79 0 0 chr6 13253767 13253830 -136263207 + L1_Mm LINE L1 4658 4720 -1163 3 686 22 56 0 0 chr6 13255690 13255726 -136261311 + AT_rich Low_complexity Low_complexity 1 36 0 3 686 1015 54 0 81 chr6 13256597 13256757 -136260280 + L1_Mus1 LINE L1 6419 6565 -2 3 686 24 0 0 0 chr6 13256757 13256781 -136260256 + AT_rich Low_complexity Low_complexity 1 24 0 3 686 269 191 33 33 chr6 13256847 13256939 -136260098 + A-rich Low_complexity Low_complexity 3 94 0 3 686 652 296 46 46 chr6 13257198 13257414 -136259623 + B3 SINE B2 1 216 0 3 686 1497 259 47 67 chr6 13257806 13258406 -136258631 + Lx9 LINE L1 7024 7611 -33 3 686 6488 135 29 6 chr6 13258550 13259566 -136257471 - Lx4A LINE L1 -2 7056 6018 3 686 1657 130 28 3 chr6 13259567 13259853 -136257184 + Lx4A LINE L1 5735 6027 -1031 3 686 245 182 0 18 chr6 13259870 13259926 -136257111 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 686 282 341 39 72 chr6 13260019 13260199 -136256838 - MTEa LTR MaLR 0 379 206 3 686 504 353 139 20 chr6 13260597 13261092 -136255945 + L2a LINE L2 2328 2881 -538 3 686 1242 183 9 5 chr6 13261165 13261384 -136255653 + URR1B DNA MER1_type 6 225 0 3 686 234 328 55 22 chr6 13261417 13261574 -136255463 + L2a LINE L2 3222 3371 -16 3 686 1233 71 0 12 chr6 13261698 13261870 -136255167 + B2_Mm2 SINE B2 2 171 -24 3 686 23 33 0 0 chr6 13263126 13263156 -136253881 + AT_rich Low_complexity Low_complexity 1 30 0 3 686 240 339 24 16 chr6 13263899 13264022 -136253015 + Lx8 LINE L1 6674 6797 -676 3 686 1108 257 21 7 chr6 13264025 13264355 -136252682 + MTD LTR MaLR 2 419 0 3 686 621 262 167 8 chr6 13264363 13264621 -136252416 + Lx8 LINE L1 6800 7098 -375 3 686 308 240 13 26 chr6 13264640 13264794 -136252243 + GA-rich Low_complexity Low_complexity 3 154 0 3 686 1825 93 8 0 chr6 13265042 13265288 -136251749 - L1_Mus1 LINE L1 0 6567 6320 3 686 26356 80 60 13 chr6 13265421 13270519 -136246518 + L1Md_F3 LINE L1 243 5586 -297 3 686 8216 31 10 6 chr6 13270519 13271512 -136245525 + L1Md_F3 LINE L1 5587 6583 -1 3 686 5361 109 0 4 chr6 13271507 13272291 -136244746 + L1_Mus2 LINE L1 5783 6563 -3 3 686 5001 111 24 98 chr6 13273229 13274208 -136242829 - RMER17A2 LTR ERVK 0 906 1 3 686 576 40 0 0 chr6 13274712 13274787 -136242250 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 686 667 152 316 0 chr6 13275030 13275201 -136241836 - URR1A DNA MER1_type 0 226 2 3 686 345 263 58 6 chr6 13276182 13276354 -136240683 - L1M4 LINE L1 -786 5360 5180 3 686 198 0 0 0 chr6 13276383 13276405 -136240632 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 3 686 22 35 0 0 chr6 13276473 13276502 -136240535 + AT_rich Low_complexity Low_complexity 1 29 0 3 686 2882 73 5 3 chr6 13276506 13276890 -136240147 - L1_Mus3 LINE L1 -8 6630 6246 3 686 410 308 100 25 chr6 13276913 13276968 -136240069 - L1M4 LINE L1 -987 5159 5102 3 686 366 23 0 0 chr6 13276968 13277011 -136240026 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 686 410 308 100 25 chr6 13277011 13277155 -136239882 - L1M4 LINE L1 -1045 5101 4946 3 686 1486 49 0 0 chr6 13277314 13277499 -136239538 + B2_Mm1t SINE B2 6 190 -3 3 686 541 292 61 14 chr6 13277501 13277796 -136239241 - L1M4 LINE L1 -1446 4700 4392 3 686 457 239 168 0 chr6 13277859 13278085 -136238952 - L1MA6 LINE L1 -6 6294 6031 3 686 455 138 0 11 chr6 13278154 13278242 -136238795 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 686 487 338 84 59 chr6 13278281 13278520 -136238517 - B4 SINE B4 -44 248 4 3 686 387 0 0 0 chr6 13278705 13278748 -136238289 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 3 686 519 17 0 0 chr6 13278748 13278808 -136238229 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 686 6775 168 41 15 chr6 13278808 13279882 -136237155 - Lx4B LINE L1 -13 7045 5936 3 686 2037 160 151 44 chr6 13279882 13279953 -136237084 - RLTR11A LTR ERVK 0 528 448 3 686 432 0 0 0 chr6 13279953 13280001 -136237036 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 686 2037 160 151 44 chr6 13280001 13280406 -136236631 - RLTR11A LTR ERVK -81 447 2 3 686 6775 168 41 15 chr6 13280406 13280575 -136236462 - Lx4B LINE L1 -1123 5935 5770 3 686 5580 98 4 0 chr6 13280577 13281382 -136235655 + L1Md_F LINE L1 216 1023 -5496 4 686 34148 60 2 24 chr6 13281380 13286943 -136230094 + L1Md_T LINE L1 263 5586 -297 4 686 8391 36 0 0 chr6 13286944 13287939 -136229098 + L1Md_T LINE L1 5588 6582 0 4 686 30481 78 5 0 chr6 13287940 13292398 -136224639 + L1Md_T LINE L1 1108 5585 -298 4 686 8896 12 0 0 chr6 13292399 13293395 -136223642 + L1Md_T LINE L1 5587 6582 0 4 686 1108 50 0 0 chr6 13293397 13293536 -136223501 + L1Md_F2 LINE L1 5447 5585 -298 4 686 8019 50 3 0 chr6 13293537 13294530 -136222507 + L1Md_F2 LINE L1 5587 6582 0 4 686 9088 63 0 0 chr6 13294530 13295734 -136221303 + L1Md_F2 LINE L1 4382 5585 -298 4 686 7954 47 2 0 chr6 13295735 13296710 -136220327 + L1Md_F2 LINE L1 5587 6563 -19 4 686 1112 168 14 0 chr6 13296724 13296932 -136220105 - L1_Mur2 LINE L1 -104 5773 5563 4 686 14146 122 47 6 chr6 13296929 13299457 -136217580 - L1_Mur2 LINE L1 -1060 4817 2186 4 686 743 246 122 42 chr6 13299504 13300350 -136216687 - L1MA7 LINE L1 -434 5857 4956 4 686 25 0 0 0 chr6 13300805 13300830 -136216207 + AT_rich Low_complexity Low_complexity 1 25 0 4 686 211 333 16 16 chr6 13300870 13300934 -136216103 + ID4_ SINE ID 19 82 -1 4 686 350 309 57 57 chr6 13301035 13301210 -136215827 + L1M5 LINE L1 4465 4639 -1507 4 686 22 56 0 0 chr6 13301840 13301876 -136215161 + AT_rich Low_complexity Low_complexity 1 36 0 4 686 7116 56 0 0 chr6 13301877 13302804 -136214233 - L1Md_T LINE L1 0 6582 5656 4 686 4514 22 2 0 chr6 13302802 13303360 -136213677 + Lx6 LINE L1 5132 5694 -1766 4 686 374 343 48 0 chr6 13303513 13303618 -136213419 + PB1D7 SINE Alu 1 110 -10 4 686 306 0 0 0 chr6 13303618 13303652 -136213385 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 686 428 266 129 24 chr6 13304554 13304691 -136212346 - MLT1A0 LTR MaLR -261 147 4 4 686 287 223 65 77 chr6 13304833 13305003 -136212034 + RLTR42-int LTR ERVK 1233 1400 -4122 4 686 367 211 111 0 chr6 13307817 13307907 -136209130 + PB1D9 SINE Alu 20 119 -1 4 686 248 230 13 26 chr6 13307935 13308011 -136209026 - L1_Mur3 LINE L1 -1779 4101 4027 4 686 783 331 35 16 chr6 13308004 13308376 -136208661 + Lx8 LINE L1 6766 7144 -329 4 686 590 239 0 0 chr6 13308798 13308911 -136208126 + ID_B1 SINE B4 112 224 0 4 686 27 49 0 0 chr6 13308941 13308982 -136208055 + AT_rich Low_complexity Low_complexity 1 41 0 4 686 27 49 0 0 chr6 13309662 13309703 -136207334 + AT_rich Low_complexity Low_complexity 1 41 0 4 686 186 310 0 0 chr6 13309738 13309796 -136207241 - L2a LINE L2 0 3426 3369 4 686 3030 87 7 2 chr6 13310016 13310421 -136206616 - MTB_Mm LTR MaLR 0 407 1 4 686 863 187 40 4 chr6 13310700 13310926 -136206111 + Lx9 LINE L1 7410 7643 -1 4 686 24 0 0 0 chr6 13310926 13310950 -136206087 + AT_rich Low_complexity Low_complexity 1 24 0 4 686 232 293 71 26 chr6 13311241 13311395 -136205642 - L1MA5 LINE L1 -293 6007 5847 4 686 1245 249 146 15 chr6 13311410 13311740 -136205297 - MTD LTR MaLR -28 391 19 4 686 385 310 21 11 chr6 13311857 13312043 -136204994 - L1MA5 LINE L1 -592 5708 5521 4 686 180 0 0 0 chr6 13312048 13312068 -136204969 + (T)n Simple_repeat Simple_repeat 1 20 0 4 686 405 310 11 4 chr6 13312070 13312191 -136204846 + PB1D10 SINE Alu 3 126 -21 4 686 243 0 0 0 chr6 13312251 13312278 -136204759 + (T)n Simple_repeat Simple_repeat 1 27 0 4 686 37860 26 1 6 chr6 13312283 13318464 -136198573 - L1Md_T LINE L1 -1 6581 440 4 686 722 299 19 13 chr6 13318581 13318740 -136198297 - RSINE1 SINE B4 -4 161 2 4 686 406 253 90 35 chr6 13318751 13319062 -136197975 - L1MA5 LINE L1 -967 5176 4849 4 686 403 340 26 5 chr6 13320304 13320496 -136196541 + B3A SINE B2 3 198 0 4 686 440 269 161 6 chr6 13320951 13321262 -136195775 - L1MA6 LINE L1 -1 6299 5941 4 686 203 219 31 0 chr6 13322254 13322318 -136194719 + (TATG)n Simple_repeat Simple_repeat 1 66 0 4 686 601 306 17 50 chr6 13322385 13322564 -136194473 - B4 SINE B4 -119 173 1 4 686 305 124 0 73 chr6 13322660 13322756 -136194281 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 4 686 417 360 69 64 chr6 13322790 13322992 -136194045 - LTR33 LTR ERVL -293 222 20 4 686 280 207 85 152 chr6 13323189 13323354 -136193683 - RMER10A LTR ERVL -29 413 260 4 686 1737 127 36 65 chr6 13323401 13323737 -136193300 - ORR1A3 LTR MaLR 0 326 1 4 686 194 402 34 0 chr6 13325033 13325097 -136191940 + MIRm SINE MIR 156 276 0 4 686 194 189 151 0 chr6 13325097 13325150 -136191887 + L2c LINE L2 3325 3385 -2 4 686 460 369 135 29 chr6 13326485 13326862 -136190175 - MLT1E3 LTR MaLR -199 425 9 4 686 767 156 14 22 chr6 13326865 13327003 -136190034 + B1_Mus2 SINE Alu 9 145 -2 4 686 279 0 0 0 chr6 13327003 13327034 -136190003 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 686 470 282 26 0 chr6 13327298 13327415 -136189622 + RSINE1 SINE B4 4 123 -42 4 686 393 281 106 73 chr6 13328105 13328199 -136188838 + L1M2 LINE L1 4548 4639 -1504 4 686 824 262 0 25 chr6 13328199 13328395 -136188642 + B3A SINE B2 1 191 -7 4 686 393 281 106 73 chr6 13328395 13328573 -136188464 + L1M2 LINE L1 4640 4829 -1314 4 686 223 322 45 26 chr6 13328991 13329104 -136187933 - MIR SINE MIR -145 117 9 4 686 216 343 113 9 chr6 13329455 13329561 -136187476 - L2a LINE L2 -9 3417 3301 4 686 226 281 53 0 chr6 13329597 13329711 -136187326 - L1MA8 LINE L1 -48 6243 6124 4 686 833 317 95 51 chr6 13329711 13330100 -136186937 - MTD LTR MaLR -13 406 1 4 686 222 37 0 0 chr6 13330132 13330159 -136186878 + (TTA)n Simple_repeat Simple_repeat 2 28 0 4 686 1017 73 0 0 chr6 13330161 13330297 -136186740 - B1_Mm SINE Alu -5 142 7 4 686 254 257 0 0 chr6 13330305 13330379 -136186658 - L1MA8 LINE L1 -194 6097 6024 4 686 253 351 24 95 chr6 13330412 13330538 -136186499 - PB1D10 SINE Alu 0 117 1 4 686 668 299 40 16 chr6 13330538 13330577 -136186460 - L1MA8 LINE L1 -256 6035 5999 4 686 768 50 0 0 chr6 13330577 13330678 -136186359 + (TC)n Simple_repeat Simple_repeat 2 102 0 4 686 668 299 40 16 chr6 13330678 13330941 -136186096 - L1MA8 LINE L1 -293 5998 5726 4 686 685 241 145 56 chr6 13330944 13331282 -136185755 + RLTR9A LTR ERVK 1 368 0 4 686 286 362 17 0 chr6 13331556 13331672 -136185365 - L2a LINE L2 -500 2919 2802 4 686 198 191 0 0 chr6 13332804 13332851 -136184186 + T-rich Low_complexity Low_complexity 1 47 0 4 686 717 174 0 108 chr6 13332852 13333019 -136184018 - B1_Mur3 SINE Alu 0 149 1 4 686 1146 242 79 85 chr6 13333555 13334051 -136182986 + RMER13A LTR ERVK 1 493 -367 4 686 288 264 86 21 chr6 13334321 13334414 -136182623 + RLTR23 LTR ERV1 330 428 -2 4 686 267 268 28 0 chr6 13335225 13335296 -136181741 - MER5A1 DNA MER1_type -56 110 38 4 686 4296 68 3 33 chr6 13335373 13335954 -136181083 + LTRIS2 LTR ERV1 1 564 0 4 686 550 337 128 20 chr6 13336004 13336310 -136180727 - LTR31 LTR ERV1 -116 503 165 4 686 2487 177 64 99 chr6 13336330 13337044 -136179993 - RMER6C LTR ERVK -1 689 1 4 686 373 329 78 58 chr6 13337106 13337454 -136179583 - ORR1E LTR MaLR -4 355 1 4 686 988 163 113 5 chr6 13339051 13339255 -136177782 + URR1A DNA MER1_type 1 226 0 4 686 324 83 0 0 chr6 13340035 13340083 -136176954 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 686 34120 68 1 15 chr6 13340342 13346497 -136170540 - L1Md_F2 LINE L1 -8 6574 511 4 686 1038 90 0 0 chr6 13346656 13346801 -136170236 - L1_Mus2 LINE L1 -448 6118 5974 4 686 4329 73 60 0 chr6 13346803 13347766 -136169271 + L1_Mus2 LINE L1 4912 5961 -606 4 686 305 259 113 15 chr6 13347766 13347899 -136169138 + MTEb LTR MaLR 234 379 0 4 686 462 216 72 0 chr6 13348637 13348734 -136168303 - B3A SINE B2 -89 109 6 4 686 369 0 0 0 chr6 13349774 13349815 -136167222 + (A)n Simple_repeat Simple_repeat 1 41 0 4 686 450 0 0 0 chr6 13350338 13350388 -136166649 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 686 227 136 17 0 chr6 13353159 13353218 -136163819 + T-rich Low_complexity Low_complexity 6 65 0 4 686 1123 95 0 0 chr6 13353218 13353366 -136163671 - B1_Mus1 SINE Alu 0 148 1 4 686 22 0 0 0 chr6 13353393 13353415 -136163622 + AT_rich Low_complexity Low_complexity 1 22 0 4 686 2526 179 11 5 chr6 13354795 13355239 -136161798 + Lx4A LINE L1 6612 7058 0 4 686 820 295 109 37 chr6 13355549 13355926 -136161111 + MLT1C LTR MaLR 62 465 -2 4 686 194 0 39 0 chr6 13356004 13356030 -136161007 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 686 418 366 62 49 chr6 13356082 13356306 -136160731 - ORR1D2 LTR MaLR -112 258 32 4 686 32 75 0 0 chr6 13357072 13357139 -136159898 + AT_rich Low_complexity Low_complexity 1 67 0 4 686 256 406 90 41 chr6 13358153 13358397 -136158640 + L4 LINE RTE 1460 1715 -314 4 686 7386 226 49 26 chr6 13358414 13358702 -136158335 - Lx6 LINE L1 -4 7456 7133 4 686 414 0 0 0 chr6 13358702 13358748 -136158289 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 686 7386 204 38 34 chr6 13358748 13360595 -136156442 - Lx6 LINE L1 -328 7132 5267 4 686 5181 199 16 47 chr6 13360602 13361958 -136155079 - Lx6 LINE L1 -2978 2902 1589 4 686 288 330 11 0 chr6 13362476 13362570 -136154467 + PB1 SINE Alu 21 115 -12 4 686 574 250 46 107 chr6 13363877 13364074 -136152963 - B3A SINE B2 -29 187 3 4 686 342 67 0 0 chr6 13364157 13364202 -136152835 + (TTA)n Simple_repeat Simple_repeat 2 46 0 4 686 264 310 0 29 chr6 13364888 13364991 -136152046 + CT-rich Low_complexity Low_complexity 3 102 0 4 686 300 322 100 126 chr6 13365116 13365286 -136151751 + B3A SINE B2 2 164 -34 4 686 252 59 0 0 chr6 13365286 13365320 -136151717 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 686 236 325 21 147 chr6 13365320 13365340 -136151697 + B2_Mm2 SINE B2 150 168 -27 4 686 234 0 0 0 chr6 13366683 13366709 -136150328 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 686 734 127 22 22 chr6 13367448 13367677 -136149360 + CT-rich Low_complexity Low_complexity 1 229 0 4 85 15976 75 3 6 chr6 13368773 13371805 -136145232 - L1Md_Gf LINE L1 -2362 3524 406 4 687 23303 124 20 9 chr6 13371800 13376584 -136140453 - L1Md_F LINE L1 -877 5006 167 4 687 14758 28 6 0 chr6 13377998 13380483 -136136554 - L1Md_T LINE L1 0 6582 4090 4 687 538 57 0 0 chr6 13380608 13380678 -136136359 - L1_Mus1 LINE L1 -744 5838 5769 4 687 5062 85 33 0 chr6 13380678 13381370 -136135667 + L1_Mus1 LINE L1 5852 6566 -1 4 687 21 0 0 0 chr6 13381381 13381402 -136135635 + AT_rich Low_complexity Low_complexity 1 21 0 4 687 630 117 0 0 chr6 13381461 13381555 -136135482 - L1_Mus4 LINE L1 -196 6440 6347 5 687 1801 102 0 0 chr6 13381548 13381804 -136135233 + L1_Mus4 LINE L1 6090 6345 -293 5 687 860 112 32 26 chr6 13381801 13381957 -136135080 + L1_Mus3 LINE L1 6475 6631 -7 5 687 948 90 21 0 chr6 13382031 13382176 -136134861 + L1_Mus3 LINE L1 6479 6626 -12 5 687 1595 123 26 41 chr6 13382743 13383014 -136134023 + Lx LINE L1 6383 6649 -5 5 687 474 49 0 0 chr6 13383131 13383192 -136133845 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 687 1256 237 109 27 chr6 13383267 13383605 -136133432 + ORR1D2 LTR MaLR 1 366 -4 5 687 880 259 72 21 chr6 13383610 13384083 -136132954 - Lx7 LINE L1 -1327 6146 5652 5 687 933 92 40 40 chr6 13385082 13385230 -136131807 + B1_Mus1 SINE Alu 1 148 0 5 687 243 340 78 49 chr6 13386675 13386879 -136130158 - MIR SINE MIR 0 262 53 5 687 2417 111 70 3 chr6 13387014 13387401 -136129636 + Lx2 LINE L1 6573 6985 -12 5 687 327 184 59 39 chr6 13387484 13387586 -136129451 + L1MB4 LINE L1 6076 6179 -1 5 687 187 337 125 10 chr6 13388352 13388448 -136128589 - L2c LINE L2 0 3387 3281 5 687 875 96 32 0 chr6 13388576 13388701 -136128336 + B1_Mus1 SINE Alu 20 148 0 5 687 1403 113 0 32 chr6 13389247 13389466 -136127571 - Lx LINE L1 -534 6120 5909 5 687 36 0 0 0 chr6 13389850 13389886 -136127151 + AT_rich Low_complexity Low_complexity 1 36 0 5 687 822 344 50 28 chr6 13389941 13390377 -136126660 + MLT1F-int LTR MaLR 1039 1484 -5 5 687 3176 96 2 5 chr6 13390618 13391038 -136125999 - BGLII LTR ERVK 0 421 3 5 687 2509 144 51 0 chr6 13391148 13391523 -136125514 + ORR1B1 LTR MaLR 1 394 0 5 687 2510 111 114 34 chr6 13393705 13394151 -136122886 + RLTR45 LTR ERVK 1 482 0 5 687 187 221 42 56 chr6 13394281 13394353 -136122684 + L3 LINE CR1 850 920 -3569 5 687 227 372 145 7 chr6 13394962 13395100 -136121937 - MER20 DNA MER1_type -14 205 49 5 687 183 341 198 9 chr6 13395267 13395601 -136121436 - L2 LINE L2 -889 2530 2134 5 687 3343 204 68 20 chr6 13396593 13397354 -136119683 + RLTR40 LTR ERVK 5 802 -15 5 687 981 231 47 50 chr6 13398172 13398434 -136118603 - Lx7 LINE L1 -1457 6239 5971 5 687 3368 60 5 0 chr6 13398434 13398832 -136118205 - MTB LTR MaLR 0 400 1 5 687 981 231 47 50 chr6 13398832 13398888 -136118149 - Lx7 LINE L1 -1726 5970 5922 5 687 2442 303 30 20 chr6 13400893 13401302 -136115735 + Lx8 LINE L1 6169 6580 -893 5 687 1497 201 39 13 chr6 13401302 13401614 -136115423 + RLTR46 LTR ERVK 1 320 0 5 687 2442 303 30 20 chr6 13401614 13402050 -136114987 + Lx8 LINE L1 6581 7022 -451 5 687 1995 166 142 82 chr6 13402056 13402607 -136114430 - RLTR6_Mm LTR ERV1 -70 584 1 5 687 62803 32 12 0 chr6 13402607 13410177 -136106860 - RLTR6-int LTR ERV1 0 7778 1 5 687 2044 170 137 81 chr6 13410178 13410749 -136106288 - RLTR6_Mm LTR ERV1 -51 603 1 5 687 802 315 10 7 chr6 13410779 13411032 -136106005 + Lx8 LINE L1 7060 7321 -375 5 687 282 296 111 58 chr6 13410891 13411081 -136105956 + RMER1C Other Other 1057 1256 -86 5 687 495 209 0 0 chr6 13412517 13412608 -136104429 + L1_Mur3 LINE L1 518 608 -7120 5 687 830 154 109 11 chr6 13412596 13412780 -136104257 + L1_Mur3 LINE L1 1722 1923 -3957 5 687 4508 160 17 4 chr6 13412783 13413485 -136103552 - Lx2 LINE L1 0 6997 6287 5 687 7345 96 7 0 chr6 13413753 13414849 -136102188 - L1_Mus1 LINE L1 -2 6565 5462 5 687 327 49 0 0 chr6 13415161 13415202 -136101835 + (CATA)n Simple_repeat Simple_repeat 4 44 0 5 687 3259 31 7 81 chr6 13415662 13416083 -136100954 + RLTR10 LTR ERVK 1 390 0 5 687 6234 61 5 9 chr6 13417724 13417900 -136099137 + RLTR13C2 LTR ERVK 1 176 -632 5 687 5192 48 2 3 chr6 13417900 13418488 -136098549 - LTRIS_Mus LTR ERV1 0 587 1 5 687 6234 61 5 9 chr6 13418488 13419122 -136097915 + RLTR13C2 LTR ERVK 177 808 0 5 687 868 318 130 11 chr6 13420236 13420697 -136096340 + MLT2B1 LTR ERVL 1 516 -4 5 687 187 281 47 35 chr6 13422239 13422324 -136094713 + MIR SINE MIR 95 180 -82 5 687 252 43 0 21 chr6 13423337 13423385 -136093652 + L1Md_F3 LINE L1 6537 6583 -1 5 687 660 330 61 46 chr6 13423409 13423689 -136093348 + B4 SINE B4 9 292 0 5 687 5791 87 24 3 chr6 13423808 13424566 -136092471 + L1_Mus4 LINE L1 5855 6628 -8 5 687 238 275 137 55 chr6 13424743 13424889 -136092148 + LTR85a LTR Gypsy? 218 375 -327 5 687 1863 150 80 93 chr6 13424889 13425287 -136091750 + RLTR9C LTR ERVK 1 393 0 5 687 2122 137 15 58 chr6 13425517 13425859 -136091178 - ORR1A2 LTR MaLR 0 327 1 5 687 636 285 146 0 chr6 13425967 13426213 -136090824 - Cheshire DNA MER1_type -2113 307 26 5 687 2964 32 0 0 chr6 13427322 13427665 -136089372 - L1Md_F2 LINE L1 -523 6059 5717 5 687 4450 31 6 0 chr6 13427665 13428151 -136088886 + L1Md_T LINE L1 6081 6569 -13 5 687 209 57 0 28 chr6 13428155 13428191 -136088846 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 687 316 319 105 66 chr6 13428659 13428887 -136088150 - Lx8 LINE L1 -6 7467 7231 5 687 609 61 0 0 chr6 13429035 13429117 -136087920 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 687 260 265 62 81 chr6 13429454 13429532 -136087505 + MER58B DNA MER1_type 7 85 -256 5 687 394 294 55 9 chr6 13429532 13429642 -136087395 + PB1D10 SINE Alu 1 115 -2 5 687 260 265 62 81 chr6 13429642 13429723 -136087314 + MER58B DNA MER1_type 86 162 -179 5 687 225 246 14 0 chr6 13430044 13430113 -136086924 + L1M2 LINE L1 2829 2898 -3242 5 687 642 325 35 50 chr6 13430225 13430333 -136086704 + L1MC LINE L1 4791 4900 -1246 5 687 5501 103 94 3 chr6 13430333 13431099 -136085938 - L1_Mus3 LINE L1 -5 6633 5798 5 687 6342 107 13 11 chr6 13431099 13431455 -136085582 + L1_Mm LINE L1 4870 5226 -657 5 687 3624 25 10 0 chr6 13431455 13431847 -136085190 - MTA_Mm LTR MaLR 0 396 1 5 687 9530 39 4 3 chr6 13431847 13432944 -136084093 - MTA_Mm-int LTR MaLR 0 1098 1 5 687 3656 33 0 0 chr6 13432944 13433340 -136083697 - MTA_Mm LTR MaLR 0 396 1 5 687 6342 107 13 11 chr6 13433340 13433912 -136083125 + L1_Mm LINE L1 5227 5800 -83 5 687 1152 68 0 26 chr6 13434116 13434267 -136082770 + B1_Mus1 SINE Alu 1 147 -1 5 687 250 26 25 25 chr6 13434271 13434311 -136082726 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 687 284 289 101 8 chr6 13434362 13434491 -136082546 + L1M2 LINE L1 3494 3634 -2509 5 687 7389 86 9 0 chr6 13434506 13434570 -136082467 - L1_Mus1 LINE L1 0 6567 6504 5 687 180 0 0 0 chr6 13434570 13434590 -136082447 + (CCA)n Simple_repeat Simple_repeat 2 21 0 5 687 24337 103 5 8 chr6 13434590 13438750 -136078287 - L1_Mus1 LINE L1 -64 6503 2353 5 687 3633 151 17 57 chr6 13438773 13439540 -136077497 - RMER17A LTR ERVK -15 736 1 5 687 7328 75 22 0 chr6 13439541 13440557 -136076480 - L1_Mus1 LINE L1 -3519 2364 1327 5 687 6290 77 14 16 chr6 13440557 13441413 -136075624 - L1Md_F2 LINE L1 0 6582 5729 5 687 5454 70 1 0 chr6 13441413 13442096 -136074941 + L1Md_F2 LINE L1 5030 5713 -170 5 687 6832 59 31 2 chr6 13442100 13442979 -136074058 - L1VL1 LINE L1 -5319 1103 200 5 687 277 267 33 33 chr6 13443357 13443477 -136073560 + L1M4 LINE L1 4126 4245 -1901 5 687 629 295 86 8 chr6 13443550 13443806 -136073231 + L1M2 LINE L1 4543 4818 -1325 5 687 1560 225 13 48 chr6 13443814 13444268 -136072769 + L1_Mus4 LINE L1 306 743 -6985 5 687 1220 206 36 3 chr6 13444319 13444621 -136072416 - MurSatRep1 Unknown Unknown -474 1663 1352 5 687 978 250 20 130 chr6 13444624 13445130 -136071907 + Lx7 LINE L1 7222 7671 -25 5 687 958 208 97 4 chr6 13445134 13445361 -136071676 + L1VL2 LINE L1 66 313 -6022 5 687 6598 106 33 14 chr6 13445359 13446502 -136070535 + MusHAL1 LINE L1 520 1684 -1028 5 687 33817 36 0 0 chr6 13446507 13451720 -136065317 + L1Md_T LINE L1 280 5589 -297 5 687 8956 6 0 4 chr6 13451720 13452720 -136064317 + L1Md_T LINE L1 5590 6585 0 5 687 11143 169 118 67 chr6 13452720 13455206 -136061831 + L1_Mus4 LINE L1 2866 5567 -310 5 687 983 101 0 57 chr6 13455206 13455363 -136061674 + B1_Mus1 SINE Alu 1 148 0 5 687 11143 88 21 11 chr6 13455363 13456277 -136060760 + L1_Mus4 LINE L1 5568 6420 -216 5 687 337 296 146 28 chr6 13456385 13456456 -136060581 + L1M3 LINE L1 4856 4930 -1210 5 687 2721 91 41 13 chr6 13456456 13456845 -136060192 + MTB LTR MaLR 1 400 0 5 687 337 296 146 28 chr6 13456845 13457135 -136059902 + L1M3 LINE L1 4931 5260 -880 5 687 477 263 36 32 chr6 13457206 13457455 -136059582 + L1VL1 LINE L1 241 491 -5927 5 687 397 278 16 8 chr6 13457472 13457599 -136059438 + L1_Mus1 LINE L1 675 802 -5814 5 687 29198 103 10 15 chr6 13457608 13463481 -136053556 + L1_Mus1 LINE L1 725 6567 0 5 687 582 305 8 0 chr6 13464607 13464735 -136052302 - RSINE1 SINE B4 -29 136 8 5 687 549 30 0 0 chr6 13465068 13465135 -136051902 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 687 2962 60 27 5 chr6 13466981 13467382 -136049655 - L1_Mus3 LINE L1 0 6638 6229 5 687 3138 136 38 0 chr6 13467382 13467933 -136049104 + L1_Mm LINE L1 4801 5372 -511 5 687 1324 184 122 57 chr6 13468182 13468550 -136048487 - Lx5 LINE L1 -3 7047 6656 5 687 2010 126 79 22 chr6 13468547 13468979 -136048058 + Lx5 LINE L1 5455 5913 -1137 5 687 345 129 0 31 chr6 13468988 13469052 -136047985 - L1_Mur1 LINE L1 -436 5450 5389 5 687 351 0 0 0 chr6 13469908 13469947 -136047090 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 687 432 0 0 0 chr6 13469947 13469994 -136047043 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 687 512 270 95 39 chr6 13470466 13470825 -136046212 + L1MC LINE L1 2955 3333 -2813 5 687 180 0 0 0 chr6 13471029 13471049 -136045988 + (T)n Simple_repeat Simple_repeat 1 20 0 5 687 462 308 69 0 chr6 13471070 13471200 -136045837 + ID_B1 SINE B4 85 223 -1 5 687 491 158 10 0 chr6 13471200 13471266 -136045771 + polypurine Low_complexity Low_complexity 1 66 0 5 687 834 11 0 0 chr6 13471266 13471361 -136045676 + (GGAAA)n Simple_repeat Simple_repeat 2 96 0 5 687 491 158 10 0 chr6 13471361 13471395 -136045642 + polypurine Low_complexity Low_complexity 67 101 0 5 687 558 0 0 0 chr6 13471413 13471475 -136045562 + (GGGA)n Simple_repeat Simple_repeat 1 62 0 5 687 659 46 0 11 chr6 13472216 13472304 -136044733 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 5 687 225 178 160 27 chr6 13472337 13472412 -136044625 - Lx7 LINE L1 -1 7695 7611 5 687 468 0 0 0 chr6 13472417 13472469 -136044568 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 687 417 20 0 0 chr6 13472469 13472518 -136044519 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 687 335 344 82 64 chr6 13472943 13473114 -136043923 + B4A SINE B4 55 228 -64 5 687 1385 77 6 0 chr6 13473327 13473510 -136043527 + B2_Mm1t SINE B2 4 187 -6 5 687 225 294 43 29 chr6 13473511 13473581 -136043456 + B4A SINE B4 222 292 0 5 687 372 22 0 0 chr6 13473597 13473642 -136043395 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 687 381 296 8 34 chr6 13475213 13475332 -136041705 - PB1D10 SINE Alu 0 117 2 5 687 402 265 139 7 chr6 13476591 13476637 -136040400 - MER76 LTR ERVL -47 644 586 6 687 468 0 0 0 chr6 13476637 13476689 -136040348 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 687 402 265 139 7 chr6 13476689 13476779 -136040258 - MER76 LTR ERVL -106 585 490 6 687 592 360 45 19 chr6 13476923 13477189 -136039848 - MER76 LTR ERVL -418 273 1 6 687 250 264 14 27 chr6 13477490 13477564 -136039473 - B4 SINE B4 -218 74 2 6 687 363 331 16 16 chr6 13477564 13477637 -136039400 + B4A SINE B4 20 92 -200 6 687 2275 103 3 9 chr6 13477637 13477971 -136039066 + IAPLTR1a_Mm LTR ERVK 1 332 -5 6 687 13845 43 25 64 chr6 13477999 13480017 -136037020 + IAPEz-int LTR ERVK 18 1957 -4524 6 687 24906 16 2 2 chr6 13480015 13482966 -136034071 + IAPEz-int LTR ERVK 3531 6481 0 6 687 2247 100 6 9 chr6 13482966 13483299 -136033738 + IAPLTR1a_Mm LTR ERVK 1 332 -5 6 687 484 374 38 75 chr6 13483278 13483492 -136033545 + B4 SINE B4 62 277 -15 6 687 384 22 0 0 chr6 13483492 13483537 -136033500 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 687 484 374 38 75 chr6 13483537 13483562 -136033475 + B4 SINE B4 278 292 0 6 687 290 269 54 14 chr6 13483854 13484001 -136033036 - L1ME1 LINE L1 -202 5977 5825 6 687 441 0 0 0 chr6 13484407 13484456 -136032581 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 687 198 0 0 0 chr6 13484456 13484477 -136032560 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 687 801 277 14 19 chr6 13484652 13484862 -136032175 + B3 SINE B2 1 209 -7 6 687 342 291 62 2 chr6 13485102 13485222 -136031815 + PB1D10 SINE Alu 4 125 -24 6 687 28 48 0 0 chr6 13486236 13486278 -136030759 + AT_rich Low_complexity Low_complexity 1 42 0 6 687 197 291 71 90 chr6 13487549 13487704 -136029333 + L2c LINE L2 2700 2851 -568 6 687 462 114 0 0 chr6 13487949 13488019 -136029018 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 687 207 236 272 35 chr6 13488031 13488145 -136028892 + L2c LINE L2 3233 3373 -14 6 687 24 32 0 0 chr6 13489158 13489189 -136027848 + AT_rich Low_complexity Low_complexity 1 31 0 6 687 402 292 52 5 chr6 13489400 13489593 -136027444 + L1MD LINE L1 5560 5761 -598 6 687 336 266 45 51 chr6 13489784 13489847 -136027190 - L1M4b LINE L1 -372 6652 6590 6 687 357 117 0 0 chr6 13489847 13489907 -136027130 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 687 336 279 31 43 chr6 13489907 13490026 -136027011 - L1M4b LINE L1 -450 6589 6469 6 687 26 30 0 0 chr6 13490144 13490177 -136026860 + AT_rich Low_complexity Low_complexity 1 33 0 6 687 421 227 84 18 chr6 13490177 13490343 -136026694 - Lx7 LINE L1 0 7696 7520 6 687 279 149 0 21 chr6 13490725 13490773 -136026264 - ORR1C2 LTR MaLR 0 384 338 6 687 309 355 78 7 chr6 13490777 13490930 -136026107 - L1M4b LINE L1 -1558 5448 5285 6 687 525 276 45 21 chr6 13491009 13491298 -136025739 - L1M4b LINE L1 -1764 5242 4947 6 687 447 324 130 30 chr6 13491350 13491620 -136025417 + LTR53 LTR ERVL 3 299 -220 6 687 581 245 72 7 chr6 13491624 13491776 -136025261 + RLTR20B2 LTR ERVK 395 556 -4 6 687 1196 193 15 12 chr6 13492668 13492944 -136024093 + MYSERV16_I-int LTR ERVK 1 248 -2078 6 687 1687 157 84 9 chr6 13492954 13493301 -136023736 - MYSERV16_I-int LTR ERVK -1707 619 247 6 687 1011 51 72 7 chr6 13493714 13493852 -136023185 + B1_Mus2 SINE Alu 1 147 0 6 687 497 265 39 39 chr6 13494043 13494196 -136022841 - RSINE1 SINE B4 -3 162 10 6 687 364 229 26 0 chr6 13494213 13494313 -136022724 - B1F SINE Alu -5 115 13 6 687 330 356 42 0 chr6 13494613 13494731 -136022306 - L1M4b LINE L1 -4833 2501 2379 6 687 763 232 200 8 chr6 13495627 13495892 -136021145 - LTR50 LTR ERVL -38 757 471 6 687 4253 129 45 1 chr6 13496050 13496696 -136020341 - RLTR33 LTR ERVK -4 674 1 6 687 395 160 13 0 chr6 13496853 13496928 -136020109 - Lx4A LINE L1 -1049 6009 5934 6 687 3156 140 11 1 chr6 13496899 13497454 -136019583 - Lx6 LINE L1 -1718 5742 5187 6 687 4681 80 57 3 chr6 13497454 13498106 -136018931 + L1_Mus4 LINE L1 5950 6636 0 6 687 1221 128 40 4 chr6 13498107 13498335 -136018702 - L1_Mur2 LINE L1 -4332 1545 1310 6 687 4010 156 13 46 chr6 13498329 13499219 -136017818 - L1_Mur2 LINE L1 -4485 1392 542 6 687 669 13 0 0 chr6 13499399 13499477 -136017560 + (GA)n Simple_repeat Simple_repeat 2 79 0 6 687 993 0 0 0 chr6 13499505 13499612 -136017425 + U6 snRNA snRNA 1 107 0 6 687 2610 88 0 0 chr6 13499612 13500000 -136017037 + L1_Mm LINE L1 1985 2372 -3511 6 85 23875 62 1 1 chr6 13500000 13503214 -136013823 + L1Md_F2 LINE L1 2373 5586 -297 1 688 7981 52 1 1 chr6 13503214 13504198 -136012839 + L1Md_F2 LINE L1 5587 6570 -12 1 688 207 93 45 23 chr6 13504278 13504322 -136012715 + A-rich Low_complexity Low_complexity 2 46 0 2 688 319 314 0 10 chr6 13504432 13504535 -136012502 + RMER15-int LTR ERVL 4639 4740 -259 3 688 349 279 70 0 chr6 13504536 13504665 -136012372 + Lx8 LINE L1 6846 6983 -490 4 688 1116 59 0 0 chr6 13505993 13506129 -136010908 + B1_Mus2 SINE Alu 2 137 -10 5 688 288 0 0 0 chr6 13506130 13506162 -136010875 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 6 688 219 36 0 0 chr6 13506162 13506190 -136010847 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 688 411 21 0 0 chr6 13506214 13506262 -136010775 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 8 688 2235 153 45 20 chr6 13506288 13506689 -136010348 + MTC LTR MaLR 11 421 0 9 688 2702 42 32 12 chr6 13506722 13507061 -136009976 + ORR1A1 LTR MaLR 1 346 0 1 688 207 196 0 0 chr6 13507260 13507306 -136009731 + A-rich Low_complexity Low_complexity 4 49 0 1 688 1378 226 126 11 chr6 13507523 13507889 -136009148 - MTD LTR MaLR 0 419 12 1 688 325 0 44 0 chr6 13507889 13507934 -136009103 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 688 441 0 0 0 chr6 13508248 13508297 -136008740 + (TAA)n Simple_repeat Simple_repeat 3 51 0 1 688 311 279 24 7 chr6 13508451 13508548 -136008489 + B1F SINE Alu 48 149 0 1 688 967 77 0 0 chr6 13508579 13508709 -136008328 + B1_Mm SINE Alu 18 147 0 1 688 439 285 82 44 chr6 13508886 13509044 -136007993 + RSINE1 SINE B4 2 165 0 1 688 1823 238 90 69 chr6 13509127 13509750 -136007287 + RMER1C Other Other 707 1342 0 1 688 633 101 42 0 chr6 13511358 13511366 -136005671 + (TTCTCC)n Simple_repeat Simple_repeat 5 12 0 1 688 1078 79 11 27 chr6 13511366 13511549 -136005488 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 688 633 101 42 0 chr6 13511549 13511599 -136005438 + (TTCTCC)n Simple_repeat Simple_repeat 5 58 0 2 688 1167 84 0 17 chr6 13511599 13511780 -136005257 + (TCC)n Simple_repeat Simple_repeat 3 180 0 2 688 1382 24 10 33 chr6 13511780 13512025 -136005012 + (TTCTCC)n Simple_repeat Simple_repeat 1 239 0 2 688 2907 23 0 0 chr6 13512222 13512568 -136004469 + ORR1A0 LTR MaLR 1 346 0 2 688 6990 128 30 11 chr6 13513085 13514198 -136002839 + Lx3B LINE L1 5837 6971 -2 2 688 23 0 0 0 chr6 13514206 13514229 -136002808 + AT_rich Low_complexity Low_complexity 1 23 0 2 688 2272 192 192 7 chr6 13514709 13515291 -136001746 - RMER6C LTR ERVK 0 690 1 2 688 21 36 0 0 chr6 13516047 13516075 -136000962 + AT_rich Low_complexity Low_complexity 1 28 0 2 688 3656 28 0 0 chr6 13516076 13516508 -136000529 - L1Md_A LINE L1 -1 6581 6150 2 688 8294 7 0 0 chr6 13516503 13517423 -135999614 + L1Md_A LINE L1 5663 6582 0 3 688 28892 34 0 0 chr6 13517432 13521139 -135995898 - L1Md_F LINE L1 -1007 4876 1170 3 688 5188 175 20 24 chr6 13521145 13522663 -135994374 - L1Md_F LINE L1 -5411 1205 99 3 688 6753 66 25 38 chr6 13522661 13523808 -135993229 - L1_Mus1 LINE L1 -10 6557 5415 3 688 1627 116 0 8 chr6 13523798 13524058 -135992979 + L1_Mm LINE L1 4961 5218 -665 3 688 2702 255 104 109 chr6 13524060 13524317 -135992720 + Lx7 LINE L1 5792 6046 -1650 3 688 1091 88 0 7 chr6 13524317 13524465 -135992572 + B1_Mus1 SINE Alu 1 147 -1 3 688 2702 255 104 109 chr6 13524465 13524616 -135992421 + Lx7 LINE L1 6047 6176 -1520 3 688 408 20 0 0 chr6 13524616 13524665 -135992372 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 688 2702 255 104 109 chr6 13524665 13524783 -135992254 + Lx7 LINE L1 6177 6331 -1365 3 688 209 33 33 0 chr6 13524783 13524813 -135992224 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 688 2702 255 104 109 chr6 13524813 13525458 -135991579 + Lx7 LINE L1 6332 6967 -729 3 688 492 18 0 0 chr6 13525458 13525515 -135991522 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 688 519 17 0 0 chr6 13525515 13525574 -135991463 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 688 2702 255 104 109 chr6 13525574 13525936 -135991101 + Lx7 LINE L1 6968 7320 -376 3 688 221 0 0 33 chr6 13525960 13525990 -135991047 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 688 386 321 118 10 chr6 13526384 13526579 -135990458 - L1MC4 LINE L1 -967 7075 6860 4 688 6279 147 35 16 chr6 13527426 13528402 -135988635 + Lx4A LINE L1 5939 6937 -121 4 688 216 0 0 0 chr6 13528402 13528426 -135988611 + (TGG)n Simple_repeat Simple_repeat 3 26 0 4 688 6279 147 35 16 chr6 13528426 13528548 -135988489 + Lx4A LINE L1 6938 7056 -2 4 688 22 0 0 0 chr6 13528548 13528570 -135988467 + AT_rich Low_complexity Low_complexity 1 22 0 4 688 180 143 0 0 chr6 13528573 13528615 -135988422 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 4 688 22 56 0 0 chr6 13531349 13531385 -135985652 + AT_rich Low_complexity Low_complexity 1 36 0 4 688 7954 112 46 4 chr6 13533454 13534741 -135982296 + Lx3C LINE L1 5629 6969 -7 4 688 238 224 0 0 chr6 13534842 13534891 -135982146 - Tigger5 DNA MER2_type -56 2350 2302 4 688 384 328 102 10 chr6 13534882 13535088 -135981949 - Tigger5 DNA MER2_type -2139 267 43 4 688 341 254 153 56 chr6 13535207 13535403 -135981634 + MER58B DNA MER1_type 29 243 -98 4 688 25 0 0 0 chr6 13535717 13535742 -135981295 + AT_rich Low_complexity Low_complexity 1 25 0 5 688 333 257 161 44 chr6 13536999 13537385 -135979652 - L1M2 LINE L1 -1493 4650 4220 5 688 680 295 117 104 chr6 13537809 13538414 -135978623 + RLTR18 LTR ERVK 1 613 -3 5 688 22 0 0 0 chr6 13539147 13539169 -135977868 + AT_rich Low_complexity Low_complexity 1 22 0 5 688 309 311 0 37 chr6 13539270 13539377 -135977660 + PB1 SINE Alu 5 107 -20 5 688 256 350 76 56 chr6 13540262 13540513 -135976524 - MTEa LTR MaLR -123 256 1 5 688 4615 246 65 64 chr6 13541588 13543490 -135973547 + MYSERV16_I-int LTR ERVK 190 2094 -232 5 688 1871 120 73 3 chr6 13543589 13543916 -135973121 + RLTR11B LTR ERVK 104 453 0 5 688 725 184 78 28 chr6 13543916 13544095 -135972942 + B2_Mm2 SINE B2 2 189 -6 5 688 24 67 0 0 chr6 13544469 13544514 -135972523 + AT_rich Low_complexity Low_complexity 1 45 0 5 688 34 0 0 0 chr6 13545691 13545725 -135971312 + AT_rich Low_complexity Low_complexity 1 34 0 6 688 813 242 73 10 chr6 13546106 13546298 -135970739 + B3 SINE B2 1 204 -12 6 688 360 333 0 74 chr6 13546619 13546781 -135970256 - B3A SINE B2 0 198 49 6 688 180 0 0 0 chr6 13546800 13546820 -135970217 + (T)n Simple_repeat Simple_repeat 1 20 0 6 688 1167 68 0 0 chr6 13546820 13546967 -135970070 - B1_Mm SINE Alu 0 147 1 6 688 272 265 104 113 chr6 13547560 13547675 -135969362 - PB1D9 SINE Alu 0 120 7 6 688 210 71 0 0 chr6 13549640 13549668 -135967369 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 688 201 94 0 0 chr6 13549671 13549703 -135967334 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 688 440 111 0 14 chr6 13550089 13550162 -135966875 + (TCC)n Simple_repeat Simple_repeat 2 73 0 6 688 221 213 208 69 chr6 13550908 13551009 -135966028 + B3A SINE B2 73 187 -11 6 688 334 261 91 9 chr6 13551156 13551376 -135965661 + L1M4 LINE L1 2732 2969 -3177 7 688 439 342 13 27 chr6 13551439 13551589 -135965448 - Charlie2a DNA MER1_type -2713 148 1 7 688 435 290 0 84 chr6 13554346 13554489 -135962548 + RSINE1 SINE B4 24 154 -11 7 688 228 35 0 0 chr6 13554503 13554532 -135962505 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 688 218 329 0 14 chr6 13554646 13554720 -135962317 + ID4_ SINE ID 2 74 -9 7 688 1110 78 14 0 chr6 13555079 13555221 -135961816 + B1_Mus2 SINE Alu 3 146 -1 7 688 180 295 118 35 chr6 13555811 13555955 -135961082 + L2 LINE L2 1973 2128 -1291 7 688 317 348 75 21 chr6 13556625 13556813 -135960224 + L2 LINE L2 2793 2990 -429 7 688 225 213 64 0 chr6 13558608 13558655 -135958382 + MIRb SINE MIR 130 179 -89 7 688 475 292 183 45 chr6 13558701 13559111 -135957926 - MER31A LTR ERV1 -9 476 11 7 688 261 0 0 0 chr6 13559720 13559749 -135957288 + (T)n Simple_repeat Simple_repeat 1 29 0 7 688 308 276 17 95 chr6 13561607 13561723 -135955314 + MLT1N2 LTR MaLR 446 552 -10 8 688 4453 28 0 0 chr6 13561756 13562258 -135954779 + RLTR1C LTR ERV1 2 503 0 8 688 1086 229 52 76 chr6 13562547 13562968 -135954069 + Lx7 LINE L1 6940 7350 -346 8 688 248 0 0 30 chr6 13563043 13563076 -135953961 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8 688 25 31 0 0 chr6 13563184 13563216 -135953821 + AT_rich Low_complexity Low_complexity 1 32 0 8 688 272 300 67 0 chr6 13563347 13563437 -135953600 + LTR82B Low_complexity ERVL 617 712 -118 8 688 389 326 39 0 chr6 13563630 13563759 -135953278 + RSINE1 SINE B4 4 137 -28 8 688 850 255 14 14 chr6 13564852 13565059 -135951978 - ID_B1 SINE B4 -6 218 12 8 688 492 18 0 0 chr6 13565213 13565270 -135951767 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 688 401 271 137 6 chr6 13565468 13565650 -135951387 - B3 SINE B2 -6 210 5 8 688 526 286 31 23 chr6 13565783 13565912 -135951125 - RSINE1 SINE B4 -33 132 3 9 688 546 228 62 42 chr6 13566484 13566676 -135950361 - B3A SINE B2 0 198 3 9 688 425 255 38 57 chr6 13567515 13567534 -135949503 + CYRA11_Mm Unknown Y-chromosome 159 174 -443 9 688 855 129 21 0 chr6 13567534 13567674 -135949363 - URR1A DNA MER1_type 0 226 84 9 688 287 222 44 27 chr6 13568581 13568663 -135948374 - B2_Mm2 SINE B2 -136 80 2 9 688 1779 169 31 6 chr6 13569615 13569936 -135947101 - ORR1A4 LTR MaLR 0 329 1 9 688 1325 271 48 20 chr6 13570375 13570980 -135946057 - L1_Mur3 LINE L1 -1551 4329 3708 9 688 211 313 170 30 chr6 13571010 13571145 -135945892 - RSINE1 SINE B4 0 165 12 9 688 244 313 29 48 chr6 13571045 13571149 -135945888 - B3A SINE B2 -90 108 7 9 688 312 281 34 28 chr6 13571162 13571324 -135945713 - L1M2 LINE L1 -2414 3729 3576 9 688 676 207 19 58 chr6 13571324 13571478 -135945559 + B1_Mur1 SINE Alu 2 149 0 1 688 271 286 57 83 chr6 13571478 13571544 -135945493 - L1M2 LINE L1 -2565 3575 3504 9 688 6329 129 29 14 chr6 13571827 13572885 -135944152 - Lx3B LINE L1 -6 6967 5894 1 688 371 298 115 23 chr6 13572931 13573054 -135943983 - L1M2 LINE L1 -2596 3251 3108 9 688 213 39 0 0 chr6 13573054 13573080 -135943957 + (TTA)n Simple_repeat Simple_repeat 3 28 0 1 688 371 279 114 16 chr6 13573080 13573259 -135943778 - L1M2 LINE L1 -3019 3124 2936 9 688 333 333 14 0 chr6 13573319 13573457 -135943580 - L1M2 LINE L1 -3383 2757 2618 9 688 276 176 40 99 chr6 13573496 13573568 -135943469 - Lx9 LINE L1 -15 7629 7564 1 688 414 0 0 0 chr6 13573568 13573614 -135943423 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 688 276 176 40 99 chr6 13573614 13573642 -135943395 - Lx9 LINE L1 -81 7563 7535 1 688 852 177 0 65 chr6 13573678 13573835 -135943202 + Lx9 LINE L1 6882 7030 -614 1 688 2800 145 29 14 chr6 13573835 13574351 -135942686 + RLTR28 LTR ERVL 1 524 0 1 688 852 177 0 65 chr6 13574351 13574392 -135942645 + Lx9 LINE L1 7031 7067 -577 1 688 500 0 17 0 chr6 13574449 13574509 -135942528 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 688 221 368 0 0 chr6 13574797 13574865 -135942172 - ID4_ SINE ID 0 83 16 1 688 24 32 0 0 chr6 13575670 13575701 -135941336 + AT_rich Low_complexity Low_complexity 1 31 0 1 688 378 0 0 0 chr6 13575854 13575896 -135941141 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 1 688 252 0 0 0 chr6 13575896 13575924 -135941113 + (T)n Simple_repeat Simple_repeat 1 28 0 1 688 619 190 84 35 chr6 13575924 13576066 -135940971 - B1_Mur4 SINE Alu 0 150 2 1 688 224 217 22 0 chr6 13577113 13577159 -135939878 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 688 214 26 25 50 chr6 13579108 13579148 -135937889 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 1 688 431 271 32 50 chr6 13579171 13579309 -135937728 + PB1D10 SINE Alu 7 147 -2 1 688 406 315 77 0 chr6 13579469 13579599 -135937438 - ID_B1 SINE B4 -5 219 80 1 688 353 324 34 81 chr6 13580121 13580269 -135936768 + B4A SINE B4 9 149 -143 1 688 232 322 105 7 chr6 13580918 13581071 -135935966 - Charlie1b DNA MER1_type -243 280 113 1 688 252 0 0 0 chr6 13581072 13581100 -135935937 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 688 210 143 0 0 chr6 13581343 13581378 -135935659 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 688 21 36 0 0 chr6 13581509 13581537 -135935500 + AT_rich Low_complexity Low_complexity 1 28 0 1 688 21 36 0 0 chr6 13581870 13581898 -135935139 + AT_rich Low_complexity Low_complexity 1 28 0 1 688 222 62 0 0 chr6 13581952 13581984 -135935053 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 688 986 115 6 0 chr6 13583567 13583741 -135933296 + (GA)n Simple_repeat Simple_repeat 2 176 0 1 688 297 0 0 0 chr6 13584625 13584658 -135932379 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 688 688 289 45 14 chr6 13584853 13585166 -135931871 - Lx7 LINE L1 -1793 5903 5547 1 688 208 276 144 33 chr6 13585888 13585978 -135931059 + L2 LINE L2 1957 2056 -1363 1 688 22 0 0 0 chr6 13586165 13586187 -135930850 + AT_rich Low_complexity Low_complexity 1 22 0 1 688 1264 268 103 0 chr6 13586584 13587002 -135930035 - Lx8 LINE L1 -146 7327 6867 1 688 292 224 117 36 chr6 13587018 13587129 -135929908 + MTC LTR MaLR 1 120 -301 1 688 2028 47 8 11 chr6 13587129 13587401 -135929636 - L1Md_F3 LINE L1 0 6584 6325 1 688 311 65 0 21 chr6 13587401 13587436 -135929601 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 1 688 1260 27 0 0 chr6 13587439 13587585 -135929452 - B1_Mm SINE Alu -1 146 1 1 688 486 0 0 0 chr6 13587731 13587785 -135929252 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 688 571 188 131 15 chr6 13587787 13587917 -135929120 - B1_Mur4 SINE Alu -5 145 1 1 688 360 231 10 62 chr6 13588737 13588834 -135928203 + MTE2b LTR MaLR 1 92 -282 1 688 261 295 94 9 chr6 13588990 13589096 -135927941 + MTE2b LTR MaLR 1 115 -264 1 688 1502 221 38 9 chr6 13589074 13589390 -135927647 + MTE2b LTR MaLR 51 375 -4 1 688 2720 75 10 42 chr6 13589980 13590384 -135926653 - L1_Mus3 LINE L1 -2 6636 6246 1 688 290 227 28 70 chr6 13590411 13590434 -135926603 - ID4_ SINE ID -3 80 60 1 688 1885 181 46 3 chr6 13590434 13590800 -135926237 + RLTR14 LTR ERV1 1 382 0 1 688 290 229 38 71 chr6 13590800 13590854 -135926183 - ID4_ SINE ID -93 59 1 1 688 28 61 0 0 chr6 13591394 13591443 -135925594 + AT_rich Low_complexity Low_complexity 1 49 0 1 688 851 236 34 54 chr6 13591994 13592424 -135924613 + MT2A LTR ERVL 3 553 -48 1 688 201 128 25 25 chr6 13592425 13592465 -135924572 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 1 688 312 108 0 0 chr6 13592521 13592575 -135924462 + MT2A LTR ERVL 490 533 0 1 688 23 54 0 0 chr6 13592580 13592617 -135924420 + AT_rich Low_complexity Low_complexity 1 37 0 1 688 2243 243 93 66 chr6 13592705 13593979 -135923058 + L1_Rod LINE L1 2417 3746 -2397 1 688 221 281 0 0 chr6 13594056 13594145 -135922892 + T-rich Low_complexity Low_complexity 1 89 0 1 688 690 201 13 0 chr6 13594352 13594506 -135922531 + L1_Mur3 LINE L1 3743 3898 -1982 1 688 1168 75 0 0 chr6 13595016 13595162 -135921875 + B1_Mus2 SINE Alu 1 146 -1 1 688 416 198 12 0 chr6 13595179 13595265 -135921772 + Lx5 LINE L1 937 1023 -6063 1 688 8602 147 194 11 chr6 13595242 13595888 -135921149 + Lx5 LINE L1 2085 2731 -3146 1 688 950 83 105 0 chr6 13595888 13596021 -135921016 + B1_Mus2 SINE Alu 1 147 0 1 688 8602 147 194 11 chr6 13596021 13597361 -135919676 + Lx5 LINE L1 2732 4434 -1443 1 688 7334 165 34 5 chr6 13597359 13599157 -135917880 + Lx5 LINE L1 5190 7050 0 1 688 183 100 0 0 chr6 13599304 13599334 -135917703 + (CATATA)n Simple_repeat Simple_repeat 5 34 0 1 688 262 179 89 82 chr6 13599342 13599488 -135917549 + Lx9 LINE L1 7478 7624 -20 1 688 227 288 17 0 chr6 13599757 13599816 -135917221 - MER21B LTR ERV1 -305 558 499 1 688 4628 133 10 2 chr6 13599833 13600906 -135916131 + Lx2 LINE L1 5030 6113 -884 1 688 466 282 172 0 chr6 13600908 13601082 -135915955 - MER21B LTR ERV1 -387 476 273 1 688 1013 305 45 35 chr6 13602092 13602302 -135914735 + MTE2b LTR MaLR 2 216 -163 1 688 199 0 31 31 chr6 13602302 13602334 -135914703 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 688 1013 305 45 35 chr6 13602334 13602497 -135914540 + MTE2b LTR MaLR 217 379 0 1 688 423 229 133 0 chr6 13602499 13602604 -135914433 + MTE2b-int LTR MaLR 4 122 -1458 1 688 638 229 83 19 chr6 13602945 13603101 -135913936 - MTE2a LTR MaLR -7 372 207 1 688 321 334 150 32 chr6 13603124 13603597 -135913440 + L1M5 LINE L1 4147 4675 -1471 1 688 23 54 0 0 chr6 13603892 13603929 -135913108 + AT_rich Low_complexity Low_complexity 1 37 0 1 688 389 306 82 7 chr6 13604115 13604250 -135912787 - MLT2B4 LTR ERVL -202 354 210 1 688 313 185 62 0 chr6 13604585 13604666 -135912371 + L1M2 LINE L1 5536 5621 -670 1 688 1502 304 110 31 chr6 13604686 13605868 -135911169 + Lx8 LINE L1 5661 6830 -814 1 688 240 122 24 0 chr6 13605882 13605923 -135911114 - MTC LTR MaLR -14 405 364 1 688 290 256 12 24 chr6 13605923 13606007 -135911030 - Lx7 LINE L1 -544 7152 7070 1 688 995 257 139 37 chr6 13606083 13606406 -135910631 - MTC LTR MaLR -65 356 1 1 688 625 306 9 13 chr6 13606459 13606684 -135910353 - Lx7 LINE L1 -403 7293 7070 1 688 4254 68 14 12 chr6 13606771 13607349 -135909688 - L1Md_F2 LINE L1 0 6582 6004 1 688 2819 58 3 0 chr6 13607349 13607727 -135909310 + L1Md_F2 LINE L1 5610 5988 -594 1 688 771 270 75 41 chr6 13607734 13608378 -135908659 - Lx7 LINE L1 -1505 6191 5442 1 688 274 174 224 77 chr6 13608489 13608632 -135908405 + L1_Mur3 LINE L1 5253 5416 -464 1 688 23 54 0 0 chr6 13608803 13608840 -135908197 + AT_rich Low_complexity Low_complexity 1 37 0 1 688 555 16 0 0 chr6 13609087 13609151 -135907886 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 1 688 23 68 0 0 chr6 13609384 13609428 -135907609 + AT_rich Low_complexity Low_complexity 1 44 0 1 688 986 240 67 64 chr6 13609945 13610305 -135906732 + ORR1D1 LTR MaLR 14 374 0 1 688 350 42 21 0 chr6 13610499 13610547 -135906490 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 1 688 2781 73 3 13 chr6 13611312 13611688 -135905349 - L1_Mus2 LINE L1 0 6566 6195 1 688 975 106 14 0 chr6 13611813 13611954 -135905083 - B1_Mus2 SINE Alu 0 147 5 1 688 255 103 0 0 chr6 13613557 13613596 -135903441 + (GGGAGA)n Simple_repeat Simple_repeat 3 41 0 1 688 842 286 37 97 chr6 13613886 13614184 -135902853 + B4 SINE B4 13 292 0 1 688 236 336 14 105 chr6 13615333 13615403 -135901634 - LTR16E1 LTR ERVL -40 498 427 1 688 851 45 9 0 chr6 13615403 13615515 -135901522 + (GGAGA)n Simple_repeat Simple_repeat 1 113 0 1 688 236 336 14 105 chr6 13615515 13615587 -135901450 - LTR16E1 LTR ERVL -112 426 369 1 688 375 23 0 0 chr6 13616373 13616417 -135900620 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 688 614 273 26 26 chr6 13616417 13616571 -135900466 - B3A SINE B2 -44 154 1 1 688 301 261 281 0 chr6 13616807 13616983 -135900054 - Lx8 LINE L1 -170 7303 7078 1 688 27 0 0 0 chr6 13617487 13617514 -135899523 + AT_rich Low_complexity Low_complexity 1 27 0 1 688 573 284 119 12 chr6 13618487 13619025 -135898012 + L1MA9 LINE L1 5218 5835 -477 1 688 21 26 0 26 chr6 13619051 13619071 -135897966 + AT_rich Low_complexity Low_complexity 1 20 0 1 688 207 69 0 0 chr6 13619071 13619100 -135897937 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1 688 21 26 0 26 chr6 13619100 13619118 -135897919 + AT_rich Low_complexity Low_complexity 1 18 0 1 688 288 295 119 25 chr6 13619138 13619465 -135897572 - L1MA9 LINE L1 -38 6274 5917 1 688 387 0 0 0 chr6 13619473 13619516 -135897521 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 688 1215 124 5 20 chr6 13619600 13619797 -135897240 + B2_Mm2 SINE B2 1 194 -1 1 688 2050 106 84 0 chr6 13620078 13620400 -135896637 - Lx LINE L1 0 6654 6306 1 688 23 22 0 61 chr6 13620631 13620680 -135896357 + AT_rich Low_complexity Low_complexity 1 46 0 1 688 197 132 0 26 chr6 13621208 13621247 -135895790 + (TTA)n Simple_repeat Simple_repeat 3 40 0 1 688 357 330 11 11 chr6 13621254 13621349 -135895688 - PB1D10 SINE Alu -20 97 3 1 688 5190 68 1 0 chr6 13621594 13622260 -135894777 - L1Md_T LINE L1 0 6582 5916 1 688 1323 104 5 5 chr6 13622728 13622922 -135894115 + B2_Mm2 SINE B2 2 195 0 1 688 321 222 541 7 chr6 13624524 13624661 -135892376 + B4A SINE B4 2 211 -81 1 688 206 254 18 0 chr6 13624697 13624752 -135892285 + (CATA)n Simple_repeat Simple_repeat 3 58 0 1 688 270 81 0 0 chr6 13627835 13627872 -135889165 + (CCG)n Simple_repeat Simple_repeat 2 38 0 1 688 226 354 18 0 chr6 13629370 13629483 -135887554 + CT-rich Low_complexity Low_complexity 3 117 0 2 688 297 324 37 105 chr6 13630018 13630180 -135886857 - B3A SINE B2 -2 196 46 2 688 1097 191 46 5 chr6 13630281 13630497 -135886540 - URR1B DNA MER1_type 0 225 1 2 688 333 0 0 0 chr6 13630785 13630822 -135886215 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 688 261 0 0 0 chr6 13630822 13630850 -135886187 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 689 2436 175 149 22 chr6 13631542 13631668 -135885369 + RLTR25B LTR ERVK 186 316 -712 2 689 279 0 0 0 chr6 13631668 13631699 -135885338 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 689 2436 175 149 22 chr6 13631699 13632156 -135884881 + RLTR25B LTR ERVK 317 842 -186 2 689 1267 211 125 15 chr6 13632517 13632894 -135884143 - RMER1B Other Other -378 688 355 2 689 23 33 0 0 chr6 13632994 13633024 -135884013 + AT_rich Low_complexity Low_complexity 1 30 0 2 689 879 182 45 77 chr6 13633336 13633556 -135883481 + RMER15 LTR ERVL 29 241 -334 2 689 1118 188 43 9 chr6 13633861 13634084 -135882953 + RMER15 LTR ERVL 263 493 -82 2 689 1100 210 118 3 chr6 13634084 13634380 -135882657 - MTC LTR MaLR -2 417 1 2 689 407 269 21 0 chr6 13634380 13634473 -135882564 + RMER15 LTR ERVL 481 575 0 2 689 230 0 33 0 chr6 13635267 13635297 -135881740 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 2 689 432 0 0 0 chr6 13635986 13636034 -135881003 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 689 729 236 18 13 chr6 13636034 13636201 -135880836 + B3 SINE B2 16 176 -19 2 689 558 337 107 60 chr6 13636224 13636451 -135880586 + L1M4 LINE L1 4611 4835 -1311 2 689 339 65 0 0 chr6 13636451 13636497 -135880540 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 689 558 337 107 60 chr6 13636497 13636903 -135880134 + L1M4 LINE L1 4836 5273 -873 2 689 410 265 106 70 chr6 13636996 13637138 -135879899 - B1F2 SINE Alu 0 149 3 2 689 4503 94 11 33 chr6 13638979 13639638 -135877399 - Lx LINE L1 0 6654 6011 2 689 507 333 70 19 chr6 13641017 13641173 -135875864 + RSINE1 SINE B4 2 165 0 2 689 216 306 94 0 chr6 13641290 13641375 -135875662 - L2a LINE L2 -3 3423 3331 2 689 224 340 31 10 chr6 13641419 13641517 -135875520 - MER5B DNA MER1_type -73 105 6 2 689 503 287 112 39 chr6 13642101 13642608 -135874429 - L1ME2 LINE L1 -73 6091 5548 2 689 225 77 0 0 chr6 13642712 13642751 -135874286 + L1_Mm LINE L1 1943 1981 -3902 2 689 369 345 40 16 chr6 13642799 13643120 -135873917 - L1MEf LINE L1 -5298 902 574 2 689 344 302 42 0 chr6 13643836 13643932 -135873105 + MLT1B LTR MaLR 192 291 -99 2 689 378 0 0 0 chr6 13643939 13643981 -135873056 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 689 579 99 0 0 chr6 13643981 13644082 -135872955 + (GA)n Simple_repeat Simple_repeat 2 102 0 2 689 411 339 16 8 chr6 13644082 13644207 -135872830 - RSINE1 SINE B4 -39 126 1 2 689 1059 93 57 57 chr6 13644806 13645000 -135872037 + B2_Mm2 SINE B2 2 195 0 2 689 189 0 0 0 chr6 13645349 13645370 -135871667 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 2 689 479 17 17 0 chr6 13645441 13645501 -135871536 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 2 689 240 35 0 0 chr6 13645582 13645611 -135871426 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 2 689 1671 119 11 4 chr6 13646538 13646816 -135870221 - Lx2 LINE L1 0 6997 6718 2 689 24 0 0 0 chr6 13647723 13647747 -135869290 + AT_rich Low_complexity Low_complexity 1 24 0 2 689 225 43 42 42 chr6 13648103 13648151 -135868886 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 2 689 1190 68 0 0 chr6 13648152 13648299 -135868738 - B1_Mus1 SINE Alu 0 148 2 2 689 22 0 0 0 chr6 13648752 13648774 -135868263 + AT_rich Low_complexity Low_complexity 1 22 0 2 689 654 310 56 40 chr6 13649055 13649357 -135867680 + Tigger5 DNA MER2_type 2078 2384 -22 2 689 758 41 10 0 chr6 13649360 13649458 -135867579 + (TCTA)n Simple_repeat Simple_repeat 1 99 0 2 689 225 0 0 0 chr6 13649519 13649544 -135867493 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 689 342 314 61 68 chr6 13649623 13649770 -135867267 + RSINE1 SINE B4 18 163 -2 2 689 19226 63 0 6 chr6 13650127 13653665 -135863372 + L1Md_Gf LINE L1 271 3885 -2001 2 689 2729 34 3 27 chr6 13653666 13654001 -135863036 - IAPLTR2b LTR ERVK 0 327 1 2 689 12852 69 22 6 chr6 13654001 13655775 -135861262 - IAPEz-int LTR ERVK 0 6481 4678 2 689 1796 79 0 0 chr6 13655793 13656033 -135861004 - IAPEY3-int LTR ERVK -5183 2497 2258 2 689 391 105 0 0 chr6 13656038 13656095 -135860942 - B1_Mur4 SINE Alu -93 57 1 2 689 4969 64 84 59 chr6 13656095 13656903 -135860134 - IAPEz-int LTR ERVK -5486 995 168 2 689 248 302 0 0 chr6 13656903 13656956 -135860081 - RLTR27 LTR ERVK -34 275 223 2 689 944 121 25 81 chr6 13656956 13657154 -135859883 - IAPEz-int LTR ERVK -6286 195 9 2 689 2687 31 3 50 chr6 13657155 13657498 -135859539 - IAPLTR2b LTR ERVK 0 327 1 2 689 4045 72 0 0 chr6 13657498 13658064 -135858973 + L1Md_F2 LINE L1 3878 4443 -1440 2 689 8361 67 1 0 chr6 13658061 13659197 -135857840 - L1Md_F2 LINE L1 -636 5247 4111 2 689 2724 43 0 0 chr6 13659196 13659541 -135857496 + L1Md_F2 LINE L1 5242 5586 -297 2 689 7996 52 1 2 chr6 13659541 13660538 -135856499 + L1Md_F2 LINE L1 5587 6582 0 2 689 8617 67 0 0 chr6 13660538 13661698 -135855339 + L1Md_F2 LINE L1 4427 5586 -297 2 689 8013 48 5 0 chr6 13661698 13662689 -135854348 + L1Md_F2 LINE L1 5587 6582 0 2 689 901 207 98 8 chr6 13663731 13663965 -135853072 - Lx9 LINE L1 -160 7484 7230 2 689 302 328 44 36 chr6 13664090 13664216 -135852821 - B1F1 SINE Alu -11 138 13 2 689 360 0 0 0 chr6 13664836 13664876 -135852161 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 689 234 150 0 0 chr6 13665522 13665562 -135851475 + (T)n Simple_repeat Simple_repeat 1 40 0 2 689 1127 50 0 14 chr6 13665568 13665709 -135851328 - B1_Mus1 SINE Alu -9 139 1 2 689 414 0 0 0 chr6 13665873 13665919 -135851118 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 689 434 159 125 29 chr6 13666556 13666692 -135850345 - Lx LINE L1 -5 6968 6820 2 689 228 100 0 0 chr6 13666692 13666732 -135850305 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 689 5764 142 31 9 chr6 13666733 13668009 -135849028 - Lx LINE L1 -16 6638 5336 2 689 3339 40 0 8 chr6 13668023 13668422 -135848615 - MTA_Mm LTR MaLR 0 396 1 2 689 7877 66 13 20 chr6 13668422 13669528 -135847509 - MTA_Mm-int LTR MaLR 0 1098 1 2 689 3149 48 8 2 chr6 13669528 13669922 -135847115 - MTA_Mm LTR MaLR 0 396 1 2 689 4219 116 14 6 chr6 13669969 13670617 -135846420 - Lx3A LINE L1 -145 6836 6184 2 689 947 118 27 27 chr6 13671850 13671998 -135845039 + B1_Mus1 SINE Alu 1 148 0 2 689 341 22 0 21 chr6 13671999 13672046 -135844991 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2 689 562 105 0 0 chr6 13672095 13672171 -135844866 - B2_Mm2 SINE B2 -118 77 2 2 689 1121 44 7 0 chr6 13672883 13673020 -135844017 + B1_Mm SINE Alu 1 138 -9 2 689 1002 127 0 0 chr6 13673033 13673191 -135843846 + (TA)n Simple_repeat Simple_repeat 1 158 0 2 689 216 97 0 0 chr6 13673213 13673244 -135843793 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 689 402 291 111 7 chr6 13673451 13673586 -135843451 - MIR SINE MIR -2 260 112 2 689 737 200 67 0 chr6 13673611 13673746 -135843291 - B1_Mur4 SINE Alu -5 145 2 2 689 285 253 24 0 chr6 13674464 13674547 -135842490 + CT-rich Low_complexity Low_complexity 1 85 0 2 689 1514 142 19 12 chr6 13674777 13675034 -135842003 + RLTR17 LTR ERVK 1 259 -433 2 689 14396 19 1 0 chr6 13675039 13677469 -135839568 - L1Md_T LINE L1 0 6582 4151 2 689 2120 183 8 3 chr6 13677469 13677825 -135839212 + RLTR17 LTR ERVK 247 604 -88 2 689 441 0 0 0 chr6 13677826 13677875 -135839162 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 689 273 348 22 0 chr6 13677884 13677976 -135839061 - Tigger7 DNA MER2_type -8 2483 2390 2 689 422 357 69 23 chr6 13677994 13678169 -135838868 - Tigger7 DNA MER2_type -2290 201 19 2 689 1286 94 11 6 chr6 13678683 13678865 -135838172 + B2_Mm2 SINE B2 3 185 -10 2 689 274 235 68 14 chr6 13679226 13679300 -135837737 - PB1D10 SINE Alu -69 80 4 2 689 2220 147 15 25 chr6 13679854 13680260 -135836777 + Lx2 LINE L1 4854 5255 -622 2 689 585 117 75 0 chr6 13680260 13680354 -135836683 + BGLII_A LTR ERVK 1 101 -344 2 689 969 67 67 0 chr6 13680365 13680499 -135836538 - B1_Mus1 SINE Alu 0 148 6 2 689 3167 186 43 9 chr6 13680511 13681092 -135835945 + RLTR17 LTR ERVK 92 692 0 2 689 6667 113 24 12 chr6 13681092 13682467 -135834570 + Lx2 LINE L1 5256 6645 -352 2 689 907 157 129 0 chr6 13682465 13682643 -135834394 + Lx2 LINE L1 6775 6975 -22 2 689 268 257 0 103 chr6 13683661 13683739 -135833298 - ID4 SINE ID -1 82 13 2 689 686 308 95 21 chr6 13684371 13684889 -135832148 - L1MB3 LINE L1 -118 6065 5503 2 689 203 265 0 0 chr6 13684901 13684950 -135832087 + CT-rich Low_complexity Low_complexity 2 50 0 2 689 3775 206 29 101 chr6 13686140 13687430 -135829607 + RMER12 LTR ERVK 1 1572 0 2 689 376 298 24 32 chr6 13687593 13687731 -135829306 + B1F SINE Alu 13 149 0 2 689 438 20 0 0 chr6 13687800 13687851 -135829186 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 689 23 33 0 0 chr6 13687965 13687995 -135829042 + AT_rich Low_complexity Low_complexity 1 30 0 2 689 270 0 0 0 chr6 13688212 13688242 -135828795 + (T)n Simple_repeat Simple_repeat 1 30 0 2 689 395 268 0 0 chr6 13688639 13688736 -135828301 - PB1D10 SINE Alu -11 106 10 2 689 262 299 93 43 chr6 13689277 13689417 -135827620 + MIR SINE MIR 2 148 -114 2 689 1082 153 109 198 chr6 13689543 13689992 -135827045 - RMER17C LTR ERVK -1 409 1 2 689 586 282 101 0 chr6 13690469 13690618 -135826419 - B3 SINE B2 0 216 53 2 689 2716 28 0 226 chr6 13690618 13691122 -135825915 - RLTR10 LTR ERVK 0 390 1 2 689 8273 21 5 0 chr6 13691124 13692114 -135824923 - RLTR10-int LTR ERVK -3 1984 990 2 689 7219 43 11 4 chr6 13692208 13693121 -135823916 - RLTR10-int LTR ERVK -1034 953 34 2 689 2705 31 0 226 chr6 13693121 13693625 -135823412 - RLTR10 LTR ERVK 0 390 1 2 689 7219 43 11 4 chr6 13693625 13693637 -135823400 - RLTR10-int LTR ERVK -1954 33 22 2 689 342 0 0 0 chr6 13694178 13694216 -135822821 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 689 1210 261 105 5 chr6 13694286 13694667 -135822370 - MTD LTR MaLR 0 419 1 2 689 419 315 82 0 chr6 13695461 13695607 -135821430 - MER20 DNA MER1_type -58 161 4 2 689 249 109 0 0 chr6 13695677 13695723 -135821314 + (T)n Simple_repeat Simple_repeat 1 46 0 2 689 329 348 60 51 chr6 13695733 13695948 -135821089 + L2 LINE L2 2650 2866 -553 2 689 32 0 0 0 chr6 13697198 13697230 -135819807 + AT_rich Low_complexity Low_complexity 1 32 0 2 689 317 262 68 45 chr6 13697501 13697633 -135819404 + MamRep1161 DNA TcMar 30 164 -793 2 689 321 312 78 63 chr6 13698009 13698214 -135818823 + LTR40a LTR ERVL 10 217 -302 2 689 219 36 0 0 chr6 13698524 13698552 -135818485 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2 689 261 0 0 0 chr6 13698606 13698635 -135818402 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 2 689 376 265 202 41 chr6 13698693 13699079 -135817958 + L1MA4 LINE L1 5305 5746 -551 2 689 853 137 9 246 chr6 13699107 13699445 -135817592 + RMER17C LTR ERVK 51 308 -102 3 689 1599 135 14 105 chr6 13699452 13699934 -135817103 + RMER17C LTR ERVK 19 439 -519 3 689 387 298 183 20 chr6 13699943 13700292 -135816745 + L1MA4 LINE L1 5762 6167 -133 2 689 210 143 0 0 chr6 13700675 13700710 -135816327 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 3 689 714 252 52 31 chr6 13701256 13701485 -135815552 + Lx5 LINE L1 6816 7049 -1 3 689 606 122 0 0 chr6 13701632 13701739 -135815298 + (CA)n Simple_repeat Simple_repeat 1 107 0 3 689 206 62 31 0 chr6 13702461 13702493 -135814544 + (TAA)n Simple_repeat Simple_repeat 2 34 0 3 689 1060 301 83 19 chr6 13703513 13704540 -135812497 - L1M3c LINE L1 -498 6753 5647 3 689 1101 275 149 67 chr6 13704608 13705403 -135811634 - L1M3c LINE L1 -2435 4665 3808 3 689 342 0 0 0 chr6 13705403 13705441 -135811596 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 689 471 35 0 0 chr6 13705441 13705497 -135811540 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 689 1101 275 149 67 chr6 13705497 13706003 -135811034 - L1M3c LINE L1 -3293 3807 3257 3 689 1016 267 25 148 chr6 13706023 13706423 -135810614 + MTE2a LTR MaLR 6 356 -23 3 689 322 122 330 36 chr6 13706413 13706522 -135810515 - B2_Mm2 SINE B2 -8 187 47 3 689 1072 130 0 0 chr6 13706537 13706691 -135810346 - B2_Mm2 SINE B2 -41 154 1 3 689 1135 274 33 84 chr6 13706792 13707186 -135809851 - Lx6 LINE L1 -4 7456 7083 3 689 543 303 75 38 chr6 13707833 13708608 -135808429 - L1M3c LINE L1 -4516 2521 1634 3 689 205 77 77 0 chr6 13709566 13709605 -135807432 + A-rich Low_complexity Low_complexity 2 43 0 3 689 527 78 0 13 chr6 13709811 13709889 -135807148 + (TAA)n Simple_repeat Simple_repeat 1 77 0 3 689 1662 213 34 11 chr6 13709917 13710268 -135806769 + ORR1D1 LTR MaLR 16 374 0 3 689 313 283 37 105 chr6 13710268 13710408 -135806629 + B4A SINE B4 42 170 -122 3 689 323 336 43 8 chr6 13711097 13711214 -135805823 + MER5A DNA MER1_type 29 149 -40 3 689 28 0 0 0 chr6 13711303 13711331 -135805706 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 5397 125 3 58 chr6 13711334 13712218 -135804819 - Lx2A LINE L1 -1 7007 6172 3 689 2318 144 16 13 chr6 13712218 13712938 -135804099 - L1VL4 LINE L1 -2343 1216 499 3 689 334 273 0 0 chr6 13713114 13713180 -135803857 + ID4_ SINE ID 5 70 -13 3 689 325 216 65 43 chr6 13713266 13713358 -135803679 + MTC LTR MaLR 1 94 -327 3 689 438 296 7 18 chr6 13713439 13713634 -135803403 + L1VL1 LINE L1 87 403 -6019 3 689 249 290 30 15 chr6 13713692 13713825 -135803212 + L1_Mus1 LINE L1 675 809 -5807 3 689 4402 128 7 102 chr6 13713827 13715155 -135801882 + L1_Mus1 LINE L1 725 1904 -3979 3 689 6823 92 13 1 chr6 13715157 13716839 -135800198 + L1_Mus1 LINE L1 4851 6556 -11 3 689 3109 8 43 0 chr6 13716840 13717192 -135799845 - IAPLTR1_Mm LTR ERVK 0 367 1 3 689 51192 22 12 2 chr6 13717192 13723573 -135793464 - IAPEz-int LTR ERVK 0 6481 8 3 689 3109 8 43 0 chr6 13723573 13723925 -135793112 - IAPLTR1_Mm LTR ERVK 0 367 1 3 689 1720 178 31 9 chr6 13723950 13724274 -135792763 + MTC LTR MaLR 83 413 -8 3 689 336 48 0 0 chr6 13724369 13724411 -135792626 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 689 1313 270 162 21 chr6 13724463 13724944 -135792093 - RMER15 LTR ERVL 0 575 27 3 689 305 246 0 0 chr6 13724966 13725027 -135792010 - RMER15 LTR ERVL -514 61 1 3 689 537 303 130 12 chr6 13725028 13725282 -135791755 - B4 SINE B4 -4 288 5 3 689 336 243 91 40 chr6 13725320 13725496 -135791541 - Lx8 LINE L1 0 7473 7289 3 689 332 352 29 40 chr6 13725835 13726110 -135790927 + B4A SINE B4 3 274 -18 3 689 1026 182 124 8 chr6 13726583 13726771 -135790266 + Lx4B LINE L1 6759 6959 -99 3 689 720 0 0 0 chr6 13726771 13726851 -135790186 + (GAGAA)n Simple_repeat Simple_repeat 1 80 0 3 689 1026 182 124 8 chr6 13726851 13726927 -135790110 + Lx4B LINE L1 6960 7053 -5 3 689 326 247 0 57 chr6 13727126 13727354 -135789683 + RMER17D LTR ERVK 284 498 -391 3 689 185 357 55 67 chr6 13727395 13727560 -135789477 + MIR SINE MIR 9 171 -91 3 689 23 33 0 0 chr6 13727968 13727998 -135789039 + AT_rich Low_complexity Low_complexity 1 30 0 3 689 1955 9 0 0 chr6 13728182 13728413 -135788624 - L1Md_F2 LINE L1 -685 5897 5667 3 689 5249 59 19 3 chr6 13728413 13729093 -135787944 + L1Md_F2 LINE L1 5887 6577 -5 3 689 7238 76 12 4 chr6 13729116 13730860 -135786177 + L1_Mus1 LINE L1 4807 6567 0 3 689 364 152 0 70 chr6 13731114 13731185 -135785852 - MTE2a LTR MaLR 0 379 314 3 689 360 0 0 0 chr6 13731334 13731374 -135785663 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 689 24 67 0 39 chr6 13732053 13732131 -135784906 + AT_rich Low_complexity Low_complexity 1 75 0 3 689 623 0 46 0 chr6 13732169 13732256 -135784781 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 3 689 570 197 143 0 chr6 13732344 13732491 -135784546 + RMER1B Other Other 895 1062 -4 3 689 1028 192 51 111 chr6 13732615 13732810 -135784227 + Lx5 LINE L1 6754 6916 -134 3 689 450 0 0 0 chr6 13732810 13732860 -135784177 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 689 1028 192 51 111 chr6 13732860 13732980 -135784057 + Lx5 LINE L1 6917 7050 0 3 689 24 0 0 0 chr6 13732980 13733004 -135784033 + AT_rich Low_complexity Low_complexity 1 24 0 3 689 4452 98 29 3 chr6 13733651 13734277 -135782760 - Lx LINE L1 -2 6652 6011 3 689 410 304 36 0 chr6 13734326 13734438 -135782599 + RSINE1 SINE B4 46 161 -4 3 689 360 0 0 0 chr6 13735349 13735389 -135781648 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 689 559 315 50 50 chr6 13735477 13735542 -135781495 - Lx8 LINE L1 -1056 6417 6358 3 689 2945 6 0 6 chr6 13735542 13735870 -135781167 - IAPLTR3 LTR ERVK 0 326 1 3 689 559 315 50 50 chr6 13735870 13736125 -135780912 - Lx8 LINE L1 -1116 6357 6097 3 689 418 284 50 8 chr6 13736255 13736445 -135780592 - Lx8 LINE L1 -1565 5908 5693 3 689 189 254 0 0 chr6 13737594 13737665 -135779372 + CT-rich Low_complexity Low_complexity 4 74 0 3 689 264 307 33 33 chr6 13738121 13738212 -135778825 - PB1D7 SINE Alu 0 120 30 3 689 460 273 196 15 chr6 13738436 13738707 -135778330 + MER2 DNA MER2_type 17 336 -9 3 689 672 229 90 32 chr6 13740161 13740350 -135776687 - ORR1D2 LTR MaLR 0 370 171 3 689 8161 16 0 0 chr6 13740373 13741353 -135775684 - L1_Mm LINE L1 0 5883 4904 3 689 1615 11 0 0 chr6 13741353 13741540 -135775497 + L1Md_T LINE L1 6396 6582 0 3 689 754 229 21 52 chr6 13741541 13741734 -135775303 - ORR1D2 LTR MaLR -183 187 1 3 689 27 0 0 0 chr6 13741773 13741800 -135775237 + AT_rich Low_complexity Low_complexity 1 27 0 3 689 21 36 0 0 chr6 13741817 13741845 -135775192 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 207 0 0 0 chr6 13742093 13742116 -135774921 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 689 635 53 0 21 chr6 13742117 13742214 -135774823 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 3 689 552 308 71 0 chr6 13742253 13742451 -135774586 + B3 SINE B2 5 216 0 3 689 184 354 50 0 chr6 13742540 13742639 -135774398 - L2a LINE L2 -285 3141 3038 3 689 1018 174 0 0 chr6 13742640 13742801 -135774236 + B2_Mm2 SINE B2 1 161 -34 3 689 369 0 0 0 chr6 13742801 13742842 -135774195 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 3 689 345 302 54 70 chr6 13743165 13743350 -135773687 - L2a LINE L2 -570 2849 2668 3 689 470 231 28 84 chr6 13743471 13743613 -135773424 + MLT1A1 LTR MaLR 1 134 -274 3 689 292 338 74 30 chr6 13743669 13743904 -135773133 + MTE2a LTR MaLR 92 343 -31 3 689 2190 94 75 3 chr6 13743966 13744297 -135772740 - Lx3_Mus LINE L1 -18 6991 6637 3 689 21 0 0 0 chr6 13744605 13744626 -135772411 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 599 126 82 0 chr6 13744671 13744806 -135772231 + Lx9 LINE L1 7492 7637 -7 3 689 1340 14 19 0 chr6 13745007 13745217 -135771820 + (TCTA)n Simple_repeat Simple_repeat 1 214 0 3 689 390 308 68 45 chr6 13745354 13745448 -135771589 + Lx8 LINE L1 7148 7245 -228 3 689 1539 193 84 3 chr6 13745448 13745780 -135771257 - RLTR15 LTR ERVK 0 359 1 3 689 390 308 68 45 chr6 13745780 13745862 -135771175 + Lx8 LINE L1 7246 7328 -145 3 689 32 67 0 0 chr6 13745951 13746011 -135771026 + AT_rich Low_complexity Low_complexity 1 60 0 3 689 699 12 0 0 chr6 13747292 13747372 -135769665 + (TC)n Simple_repeat Simple_repeat 2 81 0 3 689 858 70 0 0 chr6 13747406 13747520 -135769517 + (GA)n Simple_repeat Simple_repeat 1 114 0 3 689 23 0 0 0 chr6 13747750 13747773 -135769264 + AT_rich Low_complexity Low_complexity 1 23 0 3 689 1219 54 0 0 chr6 13748196 13748344 -135768693 + B1_Mus1 SINE Alu 1 148 0 3 689 317 387 141 13 chr6 13748717 13749021 -135768016 + LTR16A LTR ERVL 2 344 -107 3 689 528 153 168 116 chr6 13749593 13749748 -135767289 + B2_Mm2 SINE B2 3 165 -30 3 689 189 0 0 0 chr6 13749748 13749769 -135767268 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 3 689 276 30 0 0 chr6 13749802 13749835 -135767202 + (T)n Simple_repeat Simple_repeat 1 33 0 3 689 1660 241 48 80 chr6 13750228 13750752 -135766285 - RLTR18B LTR ERVK -1 511 5 3 689 218 362 38 9 chr6 13750900 13751006 -135766031 + L4 LINE RTE 1441 1549 -480 3 689 7760 39 7 0 chr6 13751062 13752152 -135764885 - L1Md_F3 LINE L1 -14 6570 5474 3 689 2082 63 0 0 chr6 13752149 13752433 -135764604 + L1Md_F3 LINE L1 5157 5440 -443 3 689 15846 61 2 0 chr6 13752502 13754624 -135762413 - L1Md_F2 LINE L1 -85 5798 3672 3 689 6344 52 4 0 chr6 13754624 13755405 -135761632 + L1Md_F2 LINE L1 5799 6582 0 3 689 3970 68 2 0 chr6 13755413 13755913 -135761124 + L1_Mus1 LINE L1 6057 6557 -10 3 689 4360 58 7 0 chr6 13755914 13756711 -135760326 - L1Md_F2 LINE L1 -411 6171 5367 3 689 7386 127 17 7 chr6 13756721 13758802 -135758235 + L1_Mus4 LINE L1 4524 6629 -7 3 689 563 39 13 0 chr6 13758815 13758893 -135758144 + (GAAA)n Simple_repeat Simple_repeat 1 79 0 3 689 4567 69 23 11 chr6 13759013 13759625 -135757412 - L1Md_F2 LINE L1 -1 6581 5963 3 689 213 39 0 0 chr6 13760821 13760847 -135756190 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 689 377 262 0 0 chr6 13760888 13760972 -135756065 - B3A SINE B2 -111 87 4 3 689 271 196 0 0 chr6 13762302 13762348 -135754689 - LFSINE_Vert SINE SINE -7 452 407 3 690 183 367 13 0 chr6 13762664 13762743 -135754294 - MIR3 SINE MIR -4 204 125 3 690 562 262 113 0 chr6 13762825 13762966 -135754071 - ID_B1 SINE B4 0 224 68 3 690 769 310 50 63 chr6 13763287 13763655 -135753382 + MTE2a LTR MaLR 2 361 -58 3 690 3342 33 10 0 chr6 13763655 13764047 -135752990 - MTA_Mm LTR MaLR 0 396 1 3 690 279 0 0 0 chr6 13764055 13764086 -135752951 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 690 2838 99 38 23 chr6 13764152 13764626 -135752411 - L1_Mus3 LINE L1 -1 6637 6157 3 690 255 125 0 0 chr6 13764663 13764703 -135752334 + (TTA)n Simple_repeat Simple_repeat 2 41 0 3 690 238 339 7 71 chr6 13765335 13765475 -135751562 + MLT1A1 LTR MaLR 1 131 -277 4 690 207 0 0 0 chr6 13765497 13765520 -135751517 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 4 690 190 415 0 43 chr6 13766238 13766354 -135750683 + MIR3 SINE MIR 5 115 -93 4 690 265 242 171 24 chr6 13766455 13766578 -135750459 + MIRc SINE MIR 2 142 -126 4 690 287 367 90 29 chr6 13767418 13767797 -135749240 - L2 LINE L2 -344 3075 2674 4 690 192 218 146 0 chr6 13767825 13767880 -135749157 - L2a LINE L2 -4 3422 3360 4 690 361 205 145 151 chr6 13768657 13769032 -135748005 - RLTR19-int LTR ERVK -2179 3958 3754 4 690 417 224 33 25 chr6 13769917 13770011 -135747026 + PB1D10 SINE Alu 10 101 -16 4 690 457 328 8 0 chr6 13770879 13771007 -135746030 + B1F1 SINE Alu 1 129 -20 4 690 201 114 0 43 chr6 13772089 13772135 -135744902 + (TTA)n Simple_repeat Simple_repeat 3 46 0 4 690 960 124 0 17 chr6 13772135 13772307 -135744730 + (TTC)n Simple_repeat Simple_repeat 3 171 0 4 690 336 161 0 0 chr6 13772307 13772369 -135744668 + CT-rich Low_complexity Low_complexity 1 62 0 4 690 618 291 47 0 chr6 13772758 13772930 -135744107 + B3A SINE B2 1 180 -18 4 690 486 49 0 0 chr6 13772941 13773002 -135744035 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 690 450 124 0 0 chr6 13773003 13773092 -135743945 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 690 25 0 0 0 chr6 13773370 13773395 -135743642 + AT_rich Low_complexity Low_complexity 1 25 0 4 690 40 37 0 0 chr6 13773539 13773593 -135743444 + AT_rich Low_complexity Low_complexity 1 54 0 4 690 330 132 0 0 chr6 13773791 13773844 -135743193 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 690 227 357 24 8 chr6 13773844 13773971 -135743066 - Lx7 LINE L1 -375 7321 7193 4 690 205 176 0 0 chr6 13774013 13774047 -135742990 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 4 690 1724 249 33 14 chr6 13774054 13774474 -135742563 - Lx6 LINE L1 -169 7291 6864 4 690 896 290 19 30 chr6 13774934 13775204 -135741833 + B4A SINE B4 8 274 -18 4 690 279 79 0 0 chr6 13775256 13775294 -135741743 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 690 477 34 0 0 chr6 13775557 13775616 -135741421 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 690 628 314 68 26 chr6 13776729 13776994 -135740043 - B4A SINE B4 -12 280 1 4 690 225 0 0 0 chr6 13779020 13779045 -135737992 + (A)n Simple_repeat Simple_repeat 1 25 0 4 690 904 83 19 19 chr6 13779220 13779379 -135737658 + (TCCCC)n Simple_repeat Simple_repeat 4 162 0 4 690 291 308 102 29 chr6 13779566 13779703 -135737334 + MIR SINE MIR 90 236 -26 4 690 204 342 95 43 chr6 13782551 13782667 -135734370 + L2b LINE L2 3236 3357 -18 4 690 24 0 0 0 chr6 13784333 13784357 -135732680 + AT_rich Low_complexity Low_complexity 1 24 0 4 690 257 75 25 0 chr6 13787075 13787115 -135729922 + (GAA)n Simple_repeat Simple_repeat 1 41 0 4 690 642 113 0 0 chr6 13788167 13788264 -135728773 + (GA)n Simple_repeat Simple_repeat 2 98 0 4 690 243 0 0 0 chr6 13788439 13788466 -135728571 + (A)n Simple_repeat Simple_repeat 1 27 0 4 690 203 103 26 0 chr6 13788744 13788783 -135728254 + (CGG)n Simple_repeat Simple_repeat 2 41 0 4 690 333 145 0 0 chr6 13789189 13789251 -135727786 + (A)n Simple_repeat Simple_repeat 1 62 0 4 690 414 39 0 0 chr6 13790196 13790248 -135726789 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 690 1250 41 0 0 chr6 13790727 13790874 -135726163 - B1_Mus2 SINE Alu 0 147 1 4 690 401 129 114 7 chr6 13790905 13790995 -135726042 + B2_Mm1t SINE B2 1 97 -101 4 690 27 29 0 0 chr6 13791040 13791074 -135725963 + AT_rich Low_complexity Low_complexity 1 34 0 4 690 387 0 0 0 chr6 13793429 13793472 -135723565 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 4 690 410 280 96 17 chr6 13793563 13793741 -135723296 - Tigger14a DNA MER2_type -49 275 84 4 690 867 281 120 24 chr6 13794762 13795145 -135721892 + MER57C2 LTR ERV1 15 434 0 4 690 22 35 0 0 chr6 13795396 13795425 -135721612 + AT_rich Low_complexity Low_complexity 1 29 0 4 690 4783 117 34 16 chr6 13795819 13796707 -135720330 - RLTR13C1 LTR ERVK -21 1012 1 4 690 781 268 56 0 chr6 13796768 13796999 -135720038 + Lx6 LINE L1 7108 7351 -109 4 690 228 77 0 71 chr6 13797005 13797016 -135720021 + (TTA)n Simple_repeat Simple_repeat 3 13 0 4 690 255 48 79 16 chr6 13797016 13797079 -135719958 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 690 228 77 0 71 chr6 13797079 13797123 -135719914 + (TTA)n Simple_repeat Simple_repeat 1 41 0 4 690 372 94 0 0 chr6 13797212 13797265 -135719772 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 690 191 351 0 66 chr6 13798399 13798530 -135718507 + L2a LINE L2 3255 3426 0 4 690 1157 69 7 0 chr6 13799067 13799211 -135717826 - B1_Mm SINE Alu -1 146 2 4 690 351 310 96 18 chr6 13799379 13799577 -135717460 + MER47B DNA MER2_type 91 318 -100 4 690 566 242 66 40 chr6 13799887 13800115 -135716922 - MER33 DNA MER1_type -23 301 68 4 690 1169 13 77 13 chr6 13800196 13800352 -135716685 - L1Md_F2 LINE L1 0 6582 6417 4 690 21 0 0 0 chr6 13801811 13801832 -135715205 + AT_rich Low_complexity Low_complexity 1 21 0 4 690 306 0 0 0 chr6 13802361 13802395 -135714642 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 4 690 1009 144 0 0 chr6 13802395 13802555 -135714482 - B2_Mm2 SINE B2 -34 161 2 4 690 1195 41 0 7 chr6 13802654 13802802 -135714235 - B1_Mm SINE Alu 0 147 1 4 690 180 237 138 50 chr6 13803428 13803508 -135713529 + MIR SINE MIR 41 127 -135 4 690 3502 46 46 10 chr6 13803523 13804024 -135713013 + MMETn-int LTR ERVK 4326 4844 0 4 690 2073 74 31 16 chr6 13804024 13804341 -135712696 + RLTRETN_Mm LTR ERVK 1 322 0 4 690 642 298 80 44 chr6 13804484 13804808 -135712229 - MLT1A LTR MaLR 0 408 88 4 690 251 233 52 104 chr6 13805508 13805623 -135711414 - B1F1 SINE Alu 0 149 41 4 690 384 71 0 0 chr6 13805639 13805695 -135711342 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 690 26 0 0 0 chr6 13805819 13805845 -135711192 + AT_rich Low_complexity Low_complexity 1 26 0 4 690 1139 75 7 0 chr6 13805972 13806118 -135710919 + B1_Mus2 SINE Alu 1 147 0 4 690 246 32 0 0 chr6 13806128 13806159 -135710878 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 690 836 65 0 8 chr6 13806726 13806851 -135710186 + (TTTC)n Simple_repeat Simple_repeat 1 124 0 4 690 1190 68 0 0 chr6 13806857 13807004 -135710033 - B1_Mm SINE Alu 0 147 1 4 690 290 346 46 99 chr6 13808193 13808250 -135708787 - B1F1 SINE Alu -1 148 95 4 690 3394 30 5 0 chr6 13808250 13808644 -135708393 + MTA_Mm LTR MaLR 1 396 0 4 690 290 346 46 99 chr6 13808644 13808737 -135708300 - B1F1 SINE Alu -55 94 6 4 690 997 255 146 39 chr6 13808821 13809156 -135707881 + MTEb LTR MaLR 1 371 -8 4 690 243 0 0 0 chr6 13809595 13809622 -135707415 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 690 3592 149 78 9 chr6 13810236 13810249 -135706788 - RLTR17 LTR ERVK -3 689 677 4 690 378 0 0 0 chr6 13810249 13810291 -135706746 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 4 690 3592 149 78 9 chr6 13810291 13810920 -135706117 - RLTR17 LTR ERVK -16 676 4 4 690 24 0 0 0 chr6 13810921 13810945 -135706092 + AT_rich Low_complexity Low_complexity 1 24 0 4 690 244 355 0 13 chr6 13811988 13812065 -135704972 + AluG_3 SINE Alu 146 221 -90 4 690 269 368 7 46 chr6 13812208 13812359 -135704678 + RMER4A LTR ERVK 19 163 -303 4 690 1275 147 22 62 chr6 13812627 13812902 -135704135 - RMER1A Other Other 0 1030 767 4 690 293 319 80 51 chr6 13812931 13813106 -135703931 - L2 LINE L2 -636 2783 2604 4 690 714 38 19 19 chr6 13813637 13813744 -135703293 + (CCAA)n Simple_repeat Simple_repeat 1 107 0 4 690 850 254 24 5 chr6 13814407 13814613 -135702424 - B3 SINE B2 -5 211 2 4 690 452 286 236 5 chr6 13814780 13815179 -135701858 + L1MDa LINE L1 1132 1621 -5012 4 690 3476 71 6 0 chr6 13815199 13815666 -135701371 + L1_Mus3 LINE L1 5858 6327 -311 4 690 187 133 22 22 chr6 13815794 13815840 -135701197 + CT-rich Low_complexity Low_complexity 1 46 0 4 690 239 231 34 40 chr6 13815930 13816106 -135700931 + (CTCA)n Simple_repeat Simple_repeat 2 176 0 4 690 216 86 0 0 chr6 13817003 13817038 -135699999 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 690 2412 70 6 0 chr6 13817251 13817566 -135699471 + L1_Mus3 LINE L1 6321 6637 -1 4 690 290 336 103 45 chr6 13817944 13818100 -135698937 + Charlie4z DNA MER1_type 1 165 -2 4 690 183 42 0 0 chr6 13818110 13818134 -135698903 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 690 534 294 128 12 chr6 13818140 13818398 -135698639 - B4A SINE B4 -3 289 2 4 690 462 287 38 51 chr6 13818490 13818648 -135698389 - RSINE1 SINE B4 -7 158 3 4 690 189 94 0 0 chr6 13820069 13820101 -135696936 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 690 238 377 32 8 chr6 13823462 13823585 -135693452 + L2a LINE L2 3301 3426 0 4 690 23 54 0 0 chr6 13823744 13823781 -135693256 + AT_rich Low_complexity Low_complexity 1 37 0 4 690 1199 98 17 0 chr6 13824545 13824719 -135692318 + ORR1A3 LTR MaLR 150 326 0 4 690 1104 268 38 62 chr6 13824810 13825210 -135691827 + MTE2a LTR MaLR 18 419 0 4 690 537 30 0 0 chr6 13825524 13825591 -135691446 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 690 575 269 42 5 chr6 13825597 13825810 -135691227 - L1M1 LINE L1 -630 5670 5450 4 690 4525 49 0 0 chr6 13826140 13826687 -135690350 - L1Md_F2 LINE L1 -2 6580 6034 4 690 2093 185 63 5 chr6 13826850 13827247 -135689790 + MTC LTR MaLR 2 421 0 4 690 500 158 0 0 chr6 13827491 13827567 -135689470 - MT2B LTR ERVL -345 256 181 4 690 627 139 26 61 chr6 13827551 13827666 -135689371 - RMER6C LTR ERVK -579 111 1 5 690 7715 166 68 9 chr6 13827667 13829280 -135687757 - RMER6-int LTR ERVK -1 3176 1469 5 690 252 239 41 93 chr6 13829280 13829316 -135687721 - ORR1B1 LTR MaLR -288 106 72 5 690 1799 136 51 19 chr6 13829316 13829632 -135687405 - ORR1A3 LTR MaLR 0 326 1 5 690 2339 114 26 173 chr6 13829632 13830164 -135686873 - ORR1A3-int LTR MaLR 0 1963 1510 5 690 3696 147 28 0 chr6 13830164 13830776 -135686261 + MERVL_2A-int LTR ERVL 3893 4521 -1240 5 690 6885 150 70 26 chr6 13830776 13831775 -135685262 - RMER6-int LTR ERVK -1740 1437 408 5 690 1694 106 4 8 chr6 13831775 13832023 -135685014 + L1Md_F2 LINE L1 6324 6570 -12 5 690 6885 150 70 26 chr6 13832023 13832397 -135684640 - RMER6-int LTR ERVK -2770 407 4 5 690 1951 175 50 34 chr6 13832400 13832843 -135684194 - RMER6C LTR ERVK 0 690 241 5 690 239 106 0 113 chr6 13832815 13832868 -135684169 - RMER6C LTR ERVK -673 47 1 5 690 352 211 40 0 chr6 13832902 13832978 -135684059 - Lx7 LINE L1 -1525 6171 6093 5 690 693 175 0 9 chr6 13833847 13833962 -135683075 - B1_Mus2 SINE Alu 0 147 34 5 690 540 0 0 0 chr6 13833973 13834033 -135683004 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 690 180 0 0 0 chr6 13834369 13834389 -135682648 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 690 333 0 0 0 chr6 13834563 13834600 -135682437 + (TTA)n Simple_repeat Simple_repeat 3 39 0 5 690 267 239 250 0 chr6 13835052 13835140 -135681897 + PB1D10 SINE Alu 3 112 -5 5 690 522 323 239 12 chr6 13835169 13835504 -135681533 - L4 LINE RTE -427 1602 1192 5 690 195 42 0 0 chr6 13836485 13836509 -135680528 + (TC)n Simple_repeat Simple_repeat 2 25 0 5 690 456 300 140 75 chr6 13836550 13836871 -135680166 + MTE2a LTR MaLR 8 349 -30 5 690 34081 83 14 1 chr6 13836908 13842856 -135674181 - L1Md_F2 LINE L1 -2 6580 561 5 690 547 265 13 70 chr6 13843113 13843340 -135673697 - B3 SINE B2 -2 214 1 5 690 446 88 15 0 chr6 13844062 13844130 -135672907 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 5 690 391 18 36 0 chr6 13844436 13844492 -135672545 + (TTA)n Simple_repeat Simple_repeat 3 60 0 5 690 766 147 0 8 chr6 13844567 13844697 -135672340 + ORR1C2 LTR MaLR 1 129 -255 5 690 404 298 0 11 chr6 13844714 13844809 -135672228 - RLTR18B LTR ERVK -1 511 418 5 690 916 219 105 19 chr6 13844814 13845023 -135672014 - RLTR18B LTR ERVK -279 233 7 5 690 1071 179 77 45 chr6 13845029 13845275 -135671762 + ORR1C2 LTR MaLR 131 384 0 5 690 2612 253 64 55 chr6 13845277 13846163 -135670874 + ORR1C2-int LTR MaLR 3 896 -474 5 690 886 169 47 0 chr6 13846109 13846257 -135670780 - RLTR18 LTR ERVK -9 607 453 5 690 1217 262 52 26 chr6 13846566 13847165 -135669872 + Lx7 LINE L1 5521 6173 -1523 5 690 593 222 62 14 chr6 13847164 13847310 -135669727 + Lx7 LINE L1 7209 7361 -283 5 690 414 0 0 0 chr6 13848147 13848193 -135668844 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 5 690 838 276 95 34 chr6 13848253 13848549 -135668488 - MTD LTR MaLR -88 331 18 5 690 333 323 71 16 chr6 13848539 13848665 -135668372 - B1F1 SINE Alu -16 133 1 5 690 651 286 12 12 chr6 13848665 13848744 -135668293 - ID SINE ID -144 80 2 5 690 779 272 15 59 chr6 13848781 13848984 -135668053 - B3A SINE B2 -4 194 1 5 690 4462 78 3 3 chr6 13849804 13850386 -135666651 - MT2B2 LTR ERVL 0 584 3 5 690 241 309 44 35 chr6 13850396 13850510 -135666527 + L2c LINE L2 3269 3383 -4 5 690 200 304 24 60 chr6 13851203 13851287 -135665750 - L2c LINE L2 -51 3336 3256 5 690 216 0 0 0 chr6 13851521 13851545 -135665492 + (TTCTC)n Simple_repeat Simple_repeat 1 24 0 5 690 1434 45 0 0 chr6 13851548 13851726 -135665311 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 5 690 1256 116 16 5 chr6 13851797 13851988 -135665049 - B2_Mm2 SINE B2 0 195 3 5 690 240 86 0 0 chr6 13852274 13852309 -135664728 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 690 444 307 20 0 chr6 13852365 13852466 -135664571 - RSINE1 SINE B4 -60 105 3 5 690 221 314 191 0 chr6 13852764 13852869 -135664168 - MIRb SINE MIR -52 216 92 5 690 372 337 76 28 chr6 13853377 13853588 -135663449 + MER58A DNA MER1_type 2 222 -2 5 690 198 288 40 14 chr6 13853589 13853663 -135663374 - MIR3 SINE MIR -48 160 85 5 690 366 23 0 0 chr6 13854600 13854643 -135662394 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 690 191 36 0 35 chr6 13854792 13854821 -135662216 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 690 1124 51 0 0 chr6 13854825 13854963 -135662074 - B1_Mus1 SINE Alu -6 142 5 5 690 302 198 37 12 chr6 13855001 13855083 -135661954 - Lx7 LINE L1 0 7696 7613 5 690 812 272 12 39 chr6 13855216 13855472 -135661565 - Lx7 LINE L1 -298 7398 7150 5 690 248 288 54 14 chr6 13855653 13855727 -135661310 + ID4_ SINE ID 5 81 -2 5 690 3140 136 61 15 chr6 13856055 13856143 -135660894 - RLTR20D LTR ERVK 0 568 481 5 690 423 0 0 0 chr6 13856143 13856190 -135660847 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 690 3140 136 61 15 chr6 13856190 13856644 -135660393 - RLTR20D LTR ERVK -88 480 3 5 690 189 0 0 0 chr6 13857279 13857300 -135659737 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 690 336 316 95 46 chr6 13857895 13858145 -135658892 - ORR1E LTR MaLR -14 365 77 5 690 871 225 36 18 chr6 13858145 13858367 -135658670 + URR1A DNA MER1_type 1 226 0 5 690 336 345 63 58 chr6 13858367 13858443 -135658594 - ORR1E LTR MaLR -283 76 3 5 690 1861 238 78 43 chr6 13859122 13859789 -135657248 - Lx7 LINE L1 -1 7695 7006 5 690 1341 245 58 56 chr6 13859817 13860266 -135656771 - RLTR20A LTR ERVK -91 450 1 5 690 990 227 23 5 chr6 13860270 13860487 -135656550 - Lx7 LINE L1 -689 7007 6787 5 690 252 357 20 0 chr6 13861327 13861425 -135655612 - MLT1B LTR MaLR -34 356 257 5 690 390 21 0 0 chr6 13861486 13861533 -135655504 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 690 304 318 25 63 chr6 13861641 13861799 -135655238 - MLT1B LTR MaLR -125 265 114 5 690 467 109 18 26 chr6 13861831 13861944 -135655093 + A-rich Low_complexity Low_complexity 2 113 0 5 690 2906 47 0 3 chr6 13862266 13862631 -135654406 - L1Md_F2 LINE L1 -496 6088 5725 5 690 4244 45 0 13 chr6 13862631 13863153 -135653884 + L1Md_F2 LINE L1 6056 6570 -12 5 690 207 0 0 0 chr6 13864158 13864181 -135652856 + (T)n Simple_repeat Simple_repeat 1 23 0 5 690 199 208 56 19 chr6 13864670 13864724 -135652313 - L2 LINE L2 -1388 2031 1976 5 690 1462 208 85 49 chr6 13866023 13866388 -135650649 - ORR1C1 LTR MaLR 0 378 1 5 690 329 353 206 9 chr6 13866429 13866655 -135650382 - B4A SINE B4 -22 270 1 5 690 7628 80 5 0 chr6 13867541 13868546 -135648491 + L1_Mus3 LINE L1 5624 6633 -5 5 690 853 264 145 9 chr6 13868980 13869312 -135647725 - MTEa LTR MaLR -2 377 1 5 690 309 294 39 31 chr6 13869870 13870000 -135647037 - L1ME3 LINE L1 -6 6156 6026 5 690 386 342 83 53 chr6 13871541 13871952 -135645085 + L2a LINE L2 2976 3398 -28 5 690 7439 213 50 26 chr6 13872090 13873798 -135643239 - Lx7 LINE L1 -1 7695 5948 5 690 332 218 11 22 chr6 13873795 13873884 -135643153 - L1_Mur3 LINE L1 -1140 4740 4653 5 690 23 0 0 0 chr6 13873900 13873923 -135643114 + AT_rich Low_complexity Low_complexity 1 23 0 5 690 7929 167 48 24 chr6 13873923 13875625 -135641412 - L1_Mur3 LINE L1 -1212 4668 2925 5 690 474 170 9 48 chr6 13875665 13875770 -135641267 - L1_Mur3 LINE L1 -3555 2325 2225 5 690 30 27 0 0 chr6 13875771 13875808 -135641229 + AT_rich Low_complexity Low_complexity 1 37 0 5 690 773 208 0 0 chr6 13875844 13875974 -135641063 - B3 SINE B2 -86 130 1 5 690 666 218 62 0 chr6 13875974 13876153 -135640884 - L1_Mur3 LINE L1 -3645 2235 2046 5 690 19702 172 32 93 chr6 13876173 13880381 -135636656 - Lx LINE L1 -2 6652 2791 5 690 248 53 26 0 chr6 13880381 13880419 -135636618 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 690 19702 180 29 105 chr6 13880419 13881961 -135635076 - Lx LINE L1 -3087 2790 1249 5 690 276 30 0 0 chr6 13881961 13881994 -135635043 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 5 690 19702 123 75 1 chr6 13881994 13882642 -135634395 - Lx LINE L1 -5394 1263 562 5 690 2388 221 114 27 chr6 13882649 13883240 -135633797 - L1_Mur3 LINE L1 -1826 2088 1426 5 690 423 0 0 0 chr6 13883240 13883287 -135633750 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 690 2388 213 122 27 chr6 13883287 13883329 -135633708 - L1_Mur3 LINE L1 -4455 1425 1388 5 690 3245 41 13 3 chr6 13883329 13883721 -135633316 + MTA_Mm LTR MaLR 1 396 0 5 690 2388 227 55 25 chr6 13883721 13884193 -135632844 - L1_Mur3 LINE L1 -4493 1387 916 5 690 429 20 0 0 chr6 13884193 13884243 -135632794 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 690 2218 236 11 23 chr6 13884243 13884425 -135632612 - L1_Mur3 LINE L1 -6813 915 740 5 690 611 232 112 11 chr6 13884915 13885102 -135631935 - L1_Mur3 LINE L1 -6988 740 535 5 690 318 167 0 0 chr6 13885111 13885171 -135631866 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 690 243 0 0 0 chr6 13886145 13886172 -135630865 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 690 744 266 7 0 chr6 13886172 13886326 -135630711 - RSINE1 SINE B4 -5 160 6 5 690 6477 60 32 4 chr6 13886654 13887495 -135629542 + L1Md_F2 LINE L1 5699 6563 -19 5 690 216 0 0 0 chr6 13887495 13887519 -135629518 + (T)n Simple_repeat Simple_repeat 1 24 0 5 690 380 286 125 16 chr6 13888116 13888244 -135628793 + ID_B1 SINE B4 82 223 -1 5 690 1989 182 25 67 chr6 13888877 13889312 -135627725 + MTC LTR MaLR 1 417 -4 5 690 240 335 32 86 chr6 13889946 13890132 -135626905 + L2a LINE L2 3063 3238 -188 5 690 313 291 130 19 chr6 13890371 13890525 -135626512 + MIR SINE MIR 77 247 -15 5 690 392 356 110 31 chr6 13890712 13891242 -135625795 + L2a LINE L2 2599 3176 -250 5 690 832 279 55 69 chr6 13892079 13892484 -135624553 - MTE2a LTR MaLR -1 378 1 5 690 1177 289 38 137 chr6 13893189 13893379 -135623658 + L1_Mur3 LINE L1 3241 3430 -2450 5 86 1558 233 24 11 chr6 13893379 13893748 -135623289 + ORR1D1 LTR MaLR 1 374 0 5 691 1177 289 38 137 chr6 13893748 13894475 -135622562 + L1_Mur3 LINE L1 3431 4072 -1808 5 691 8185 41 1 0 chr6 13894475 13895457 -135621580 + L1Md_F3 LINE L1 5587 6569 -15 5 691 1177 289 38 137 chr6 13895457 13896135 -135620902 + L1_Mur3 LINE L1 4073 4678 -1202 5 691 203 88 29 0 chr6 13896257 13896291 -135620746 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 691 180 0 0 0 chr6 13896580 13896600 -135620437 + (TTA)n Simple_repeat Simple_repeat 2 21 0 5 691 2067 188 95 23 chr6 13896657 13897132 -135619905 - RLTR12B LTR ERVK 0 528 20 5 691 366 265 12 0 chr6 13897137 13897220 -135619817 - B1_Mur4 SINE Alu -64 86 3 5 691 252 0 0 0 chr6 13897366 13897394 -135619643 + (A)n Simple_repeat Simple_repeat 1 28 0 5 691 272 308 167 15 chr6 13898650 13898743 -135618294 + MTD LTR MaLR 43 155 -264 5 691 3469 162 79 93 chr6 13898743 13899154 -135617883 - RMER17D LTR ERVK -2 887 517 5 691 1203 72 0 0 chr6 13899154 13899334 -135617703 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 691 3469 162 79 93 chr6 13899334 13899383 -135617654 - RMER17D LTR ERVK -373 516 452 5 691 1023 102 0 0 chr6 13899383 13899560 -135617477 + (GA)n Simple_repeat Simple_repeat 2 178 0 5 691 3469 162 79 93 chr6 13899560 13899998 -135617039 - RMER17D LTR ERVK -438 451 3 5 691 664 291 165 21 chr6 13899998 13900239 -135616798 + MTD LTR MaLR 141 416 -3 5 691 288 0 0 0 chr6 13900355 13900387 -135616650 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 691 393 22 0 0 chr6 13900387 13900432 -135616605 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 691 598 247 28 0 chr6 13900444 13900628 -135616409 - Lx6 LINE L1 -1317 6379 6185 6 691 9254 121 47 33 chr6 13900637 13900975 -135616062 - L1_Mur2 LINE L1 -2483 3394 3056 6 691 240 59 0 0 chr6 13900975 13901009 -135616028 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 691 9254 121 47 33 chr6 13901009 13902468 -135614569 - L1_Mur2 LINE L1 -2822 3055 1572 6 691 994 171 69 0 chr6 13902500 13902716 -135614321 - L1_Mur2 LINE L1 -6265 821 591 6 691 369 217 14 42 chr6 13902717 13902789 -135614248 - B4A SINE B4 -221 71 2 6 691 6570 88 8 8 chr6 13902976 13904250 -135612787 - L1Md_F2 LINE L1 0 6582 5309 6 691 32500 70 2 4 chr6 13904248 13906259 -135610778 - L1Md_F2 LINE L1 0 6582 4575 6 691 3973 60 6 0 chr6 13906259 13906763 -135610274 - L1Md_F3 LINE L1 -1 6583 6077 6 691 32500 93 14 3 chr6 13906763 13910936 -135606101 - L1Md_F2 LINE L1 -1309 4574 357 6 691 306 0 0 0 chr6 13911129 13911163 -135605874 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 691 327 305 78 19 chr6 13911227 13911364 -135605673 - MLT2B4 LTR ERVL -44 523 379 6 691 413 325 67 16 chr6 13911903 13912097 -135604940 - MLT1D LTR MaLR -4 501 298 6 691 299 284 156 16 chr6 13912127 13912313 -135604724 - MLT1D LTR MaLR -293 212 1 6 691 3553 244 34 7 chr6 13913293 13913972 -135603065 + Lx7 LINE L1 6203 6894 -802 6 691 252 0 0 0 chr6 13913972 13914000 -135603037 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 691 3553 244 34 7 chr6 13914000 13914193 -135602844 + Lx7 LINE L1 6895 7098 -598 6 691 294 288 0 0 chr6 13914786 13914852 -135602185 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 691 7670 42 0 0 chr6 13915557 13916653 -135600384 - L1Md_T LINE L1 0 6582 5487 6 691 537 92 0 0 chr6 13916782 13916858 -135600179 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 691 612 275 46 42 chr6 13916876 13917092 -135599945 + B4 SINE B4 2 218 -74 6 691 788 311 45 122 chr6 13917189 13917344 -135599693 + MER67D LTR ERV1 9 129 -385 6 691 979 69 85 0 chr6 13917344 13917474 -135599563 - B1_Mm SINE Alu -6 141 1 6 691 788 311 45 122 chr6 13917474 13917834 -135599203 + MER67D LTR ERV1 130 484 -30 6 691 871 253 58 58 chr6 13918040 13918317 -135598720 + B4A SINE B4 1 277 -15 6 691 596 183 16 23 chr6 13918978 13919245 -135597792 + CT-rich Low_complexity Low_complexity 1 265 0 6 691 3427 187 91 40 chr6 13919580 13920454 -135596583 - RLTR25B LTR ERVK 0 1028 1 6 691 1128 246 57 98 chr6 13920523 13920600 -135596437 - RLTR11A LTR ERVK 0 528 457 6 691 258 32 0 0 chr6 13920600 13920631 -135596406 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 691 270 0 0 0 chr6 13920631 13920660 -135596377 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 691 1128 254 74 92 chr6 13920660 13921078 -135595959 - RLTR11A LTR ERVK -107 470 1 6 691 2499 67 0 0 chr6 13921239 13921570 -135595467 - L1Md_F2 LINE L1 -400 6182 5852 6 691 2552 90 58 3 chr6 13921570 13921949 -135595088 + L1Md_F2 LINE L1 6177 6576 -6 6 691 222 62 0 0 chr6 13922530 13922562 -135594475 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 6 691 696 216 7 26 chr6 13922562 13922703 -135594334 - B1_Mur3 SINE Alu -10 139 2 6 691 6129 138 27 12 chr6 13922966 13923850 -135593187 + Lx2 LINE L1 5984 6882 -115 6 691 180 0 0 0 chr6 13923850 13923870 -135593167 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 6 691 6129 138 27 12 chr6 13923870 13923980 -135593057 + Lx2 LINE L1 6883 6992 -5 6 691 510 263 43 7 chr6 13926069 13926207 -135590830 + B1_Mur1 SINE Alu 5 147 -2 6 691 607 139 17 0 chr6 13927469 13927584 -135589453 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 6 691 401 327 32 45 chr6 13927586 13927743 -135589294 - RSINE1 SINE B4 0 165 11 6 691 1578 241 58 24 chr6 13927967 13928384 -135588653 - MTD-int LTR MaLR -735 523 93 6 691 332 289 0 20 chr6 13928476 13928575 -135588462 - MTD-int LTR MaLR -1160 98 2 6 691 1406 245 44 74 chr6 13928575 13928865 -135588172 - MTD LTR MaLR 0 419 121 6 691 261 0 0 0 chr6 13928865 13928894 -135588143 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 6 691 1406 245 44 74 chr6 13928894 13929035 -135588002 - MTD LTR MaLR -299 120 1 6 691 2487 131 108 5 chr6 13929236 13929643 -135587394 - RLTR44B LTR ERVK 0 449 1 6 691 6363 183 28 42 chr6 13929644 13932293 -135584744 - RLTR44-int LTR ERVK -4 2808 659 6 691 1036 142 38 0 chr6 13932302 13932485 -135584552 - RLTR44-int LTR ERVK -2622 190 1 6 691 2548 132 97 5 chr6 13932485 13932896 -135584141 - RLTR44B LTR ERVK 0 449 1 6 691 5642 129 112 27 chr6 13934234 13935395 -135581642 - Lx2A1 LINE L1 -8 7000 5743 6 691 324 70 0 0 chr6 13935605 13935648 -135581389 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6 691 28 0 0 0 chr6 13935841 13935869 -135581168 + AT_rich Low_complexity Low_complexity 1 28 0 6 691 214 271 0 17 chr6 13936443 13936503 -135580534 + GA-rich Low_complexity Low_complexity 1 59 0 6 691 378 0 0 0 chr6 13937177 13937219 -135579818 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 691 1175 36 14 0 chr6 13937220 13937359 -135579678 - B1_Mus1 SINE Alu -6 142 2 6 691 432 236 9 55 chr6 13939326 13939455 -135577582 + PB1D7 SINE Alu 13 126 -21 6 691 218 132 19 0 chr6 13940212 13940265 -135576772 + A-rich Low_complexity Low_complexity 6 59 0 6 691 235 369 87 23 chr6 13940269 13940441 -135576596 + MLT1G1 LTR MaLR 253 435 -144 6 691 351 0 0 0 chr6 13941022 13941061 -135575976 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 691 240 35 0 0 chr6 13941061 13941089 -135575948 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 691 391 273 119 31 chr6 13941282 13941543 -135575494 + L1MB2 LINE L1 5847 6130 -41 6 691 388 311 82 74 chr6 13941676 13941919 -135575118 + MLT1D LTR MaLR 261 505 0 6 691 274 302 186 58 chr6 13943698 13943870 -135573167 + MTEa LTR MaLR 3 196 -183 6 691 686 151 5 27 chr6 13943890 13944074 -135572963 + CT-rich Low_complexity Low_complexity 1 180 0 6 691 238 297 53 32 chr6 13944215 13944309 -135572728 - PB1D10 SINE Alu 0 117 22 6 691 201 211 115 0 chr6 13944550 13944602 -135572435 - L2c LINE L2 -72 3315 3258 6 691 455 285 148 41 chr6 13946532 13946876 -135570161 - L1MB2 LINE L1 -18 6153 5773 6 691 7179 76 22 5 chr6 13948013 13949037 -135568000 + L1_Mus1 LINE L1 5526 6567 0 6 691 28 48 0 0 chr6 13949774 13949816 -135567221 + AT_rich Low_complexity Low_complexity 1 42 0 6 691 272 349 38 30 chr6 13950030 13950163 -135566874 - MER5B DNA MER1_type -5 173 40 6 691 701 204 0 6 chr6 13950590 13950748 -135566289 + CT-rich Low_complexity Low_complexity 4 160 0 6 691 1100 82 0 0 chr6 13950770 13950917 -135566120 - B1_Mus2 SINE Alu 0 147 1 6 691 344 277 27 0 chr6 13951014 13951126 -135565911 + PB1D10 SINE Alu 1 115 -2 6 691 461 342 38 25 chr6 13951167 13951326 -135565711 - B3 SINE B2 -55 161 1 6 691 264 341 165 66 chr6 13951385 13951718 -135565319 + MLT1H LTR MaLR 168 533 -16 6 691 7828 60 2 3 chr6 13951859 13953140 -135563897 - L1Md_F2 LINE L1 -14 6568 5292 6 691 2174 208 25 98 chr6 13953700 13954345 -135562692 + RMER6C LTR ERVK 1 598 -92 6 691 21 36 0 0 chr6 13955136 13955164 -135561873 + AT_rich Low_complexity Low_complexity 1 28 0 6 691 365 340 100 35 chr6 13955317 13955798 -135561239 + L1MC LINE L1 2690 3201 -2945 6 691 479 60 0 15 chr6 13956495 13956563 -135560474 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 6 691 553 285 105 50 chr6 13956587 13957063 -135559974 + L1MA8 LINE L1 5618 6119 -172 6 691 36 23 0 0 chr6 13957650 13957693 -135559344 + AT_rich Low_complexity Low_complexity 1 43 0 6 691 540 54 17 1 chr6 13957906 13957998 -135559039 + L1Md_F3 LINE L1 5912 6015 -567 6 691 3084 37 3 13 chr6 13958000 13958385 -135558652 + L1Md_F3 LINE L1 6202 6582 -2 6 691 533 327 77 0 chr6 13958846 13959066 -135557971 - MER2 DNA MER2_type -5 340 104 6 691 24 0 0 0 chr6 13959090 13959114 -135557923 + AT_rich Low_complexity Low_complexity 1 24 0 6 691 536 29 14 0 chr6 13960641 13960711 -135556326 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 691 602 351 70 4 chr6 13961080 13961323 -135555714 - B4A SINE B4 -32 260 2 6 691 2860 203 19 24 chr6 13962041 13962620 -135554417 + Lx9 LINE L1 6609 7185 -459 6 691 435 19 0 0 chr6 13962620 13962672 -135554365 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 691 381 271 41 41 chr6 13962700 13962846 -135554191 - RLTR14 LTR ERV1 -13 369 224 6 691 4323 103 9 19 chr6 13963274 13963527 -135553510 - L1_Mus4 LINE L1 -3 6633 6388 6 691 7679 39 12 31 chr6 13963527 13964524 -135552513 - RLTR13A3 LTR ERVK 0 978 1 6 691 4323 103 9 19 chr6 13964524 13964901 -135552136 - L1_Mus4 LINE L1 -249 6387 6009 6 691 581 268 119 4 chr6 13964901 13965145 -135551892 - RLTR10A LTR ERVK 0 411 140 6 691 8929 139 29 5 chr6 13965187 13966916 -135550121 - L1_Mus4 LINE L1 -610 6026 4253 6 691 446 172 33 0 chr6 13966949 13967071 -135549966 + Lx9 LINE L1 7513 7638 -6 6 691 28 0 0 0 chr6 13967079 13967107 -135549930 + AT_rich Low_complexity Low_complexity 1 28 0 6 691 1439 256 55 60 chr6 13967130 13967785 -135549252 - Lx9 LINE L1 -21 7623 6972 6 691 312 284 20 0 chr6 13967987 13968089 -135548948 + L1MC3 LINE L1 7424 7527 -258 6 691 21 71 0 0 chr6 13968241 13968283 -135548754 + AT_rich Low_complexity Low_complexity 1 42 0 6 691 22 0 0 0 chr6 13968426 13968448 -135548589 + AT_rich Low_complexity Low_complexity 1 22 0 6 691 312 91 0 0 chr6 13968777 13968821 -135548216 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 691 21 57 0 0 chr6 13968870 13968905 -135548132 + AT_rich Low_complexity Low_complexity 1 35 0 6 691 460 252 58 32 chr6 13969487 13969643 -135547394 + Charlie4a DNA MER1_type 92 251 -257 6 691 238 333 22 15 chr6 13970357 13970491 -135546546 + L1MEg LINE L1 1353 1487 -4597 6 691 1027 122 0 0 chr6 13970750 13970898 -135546139 + B1_Mus1 SINE Alu 1 148 0 6 691 298 129 156 22 chr6 13970924 13971059 -135545978 + (CAAAC)n Simple_repeat Simple_repeat 2 154 0 6 691 1327 228 106 23 chr6 13971917 13972304 -135544733 - MTC LTR MaLR -2 419 1 6 691 2081 271 59 36 chr6 13973165 13973895 -135543142 + Lx7 LINE L1 6557 7303 -393 6 691 459 0 0 0 chr6 13973928 13973979 -135543058 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 691 531 299 134 0 chr6 13974001 13974158 -135542879 + ID_B1 SINE B4 2 179 -45 6 691 247 337 81 10 chr6 13974070 13974169 -135542868 + PB1D7 SINE Alu 7 112 -8 6 691 705 24 0 0 chr6 13974553 13974636 -135542401 + (TC)n Simple_repeat Simple_repeat 1 83 0 6 691 598 310 7 0 chr6 13974636 13974781 -135542256 - B3A SINE B2 -52 146 1 6 691 333 123 0 50 chr6 13975303 13975363 -135541674 - ORR1B1 LTR MaLR 0 394 338 6 691 834 228 125 0 chr6 13975361 13975545 -135541492 - ORR1B1 LTR MaLR -185 209 3 6 691 253 200 0 0 chr6 13976484 13976539 -135540498 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 691 387 271 64 22 chr6 13976547 13976706 -135540331 - MLT2D LTR ERVL -176 288 127 7 691 531 0 0 0 chr6 13976807 13976866 -135540171 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 7 691 34 42 0 0 chr6 13977709 13977757 -135539280 + AT_rich Low_complexity Low_complexity 1 48 0 7 691 227 306 47 135 chr6 13978555 13978725 -135538312 + MLT2E LTR ERVL 242 396 -232 7 691 247 302 0 0 chr6 13978758 13978821 -135538216 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 691 182 376 71 54 chr6 13978837 13979076 -135537961 + L2 LINE L2 2139 2381 -1038 7 691 513 176 231 49 chr6 13979507 13979710 -135537327 - Lx9 LINE L1 -1 7643 7404 7 691 268 172 141 0 chr6 13979809 13979873 -135537164 + Lx5 LINE L1 6978 7050 0 7 691 3258 36 13 0 chr6 13980046 13980437 -135536600 + MTA_Mm LTR MaLR 1 396 0 7 691 441 0 0 0 chr6 13980512 13980561 -135536476 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 691 289 216 101 20 chr6 13980681 13980780 -135536257 + L1MCa LINE L1 1281 1387 -5121 7 691 1118 233 119 21 chr6 13980792 13981129 -135535908 - ORR1D2 LTR MaLR 0 370 1 7 691 334 334 88 82 chr6 13981259 13981647 -135535390 - MLT1B LTR MaLR 0 390 1 7 691 288 0 0 0 chr6 13981715 13981747 -135535290 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 691 215 167 24 0 chr6 13981838 13981880 -135535157 + (CTATA)n Simple_repeat Simple_repeat 3 45 0 7 691 207 200 0 0 chr6 13982394 13982439 -135534598 + (TTA)n Simple_repeat Simple_repeat 3 47 0 7 691 7339 132 30 1 chr6 13982538 13983719 -135533318 - Lx3_Mus LINE L1 -11 6998 5783 7 691 1829 58 0 16 chr6 13983728 13983975 -135533062 - L1Md_F2 LINE L1 0 6582 6340 7 691 25012 99 38 47 chr6 13983975 13988148 -135528889 - Lx LINE L1 -97 5789 1656 7 691 3720 110 72 0 chr6 13988137 13988709 -135528328 + Lx LINE L1 5837 6449 -205 7 691 415 312 75 22 chr6 13988808 13989129 -135527908 - L1MD LINE L1 -1309 4837 4500 7 691 23 33 0 0 chr6 13989847 13989877 -135527160 + AT_rich Low_complexity Low_complexity 1 30 0 7 691 1801 198 67 3 chr6 13989997 13990342 -135526695 - ORR1D1 LTR MaLR 0 374 8 7 691 1918 168 15 9 chr6 13990605 13990947 -135526090 - ORR1A1 LTR MaLR 0 346 3 7 691 191 62 0 59 chr6 13990995 13991029 -135526008 + (TATATG)n Simple_repeat Simple_repeat 4 35 0 7 691 240 256 159 40 chr6 13991029 13991155 -135525882 - L1MC3 LINE L1 -1187 6598 6458 7 691 283 321 24 0 chr6 13991408 13991492 -135525545 - MLT1J LTR MaLR -326 186 101 7 691 239 93 23 0 chr6 13991969 13992012 -135525025 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 7 691 229 363 31 71 chr6 13992015 13992113 -135524924 + PB1D7 SINE Alu 16 109 -11 7 691 227 269 19 0 chr6 13992139 13992191 -135524846 + ID SINE ID 10 62 -162 7 691 342 0 0 0 chr6 13992234 13992272 -135524765 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 691 366 326 187 20 chr6 13992374 13992839 -135524198 + L1M4b LINE L1 1352 2039 -5063 7 691 2975 83 2 2 chr6 13992972 13993372 -135523665 - MTB LTR MaLR 0 400 1 7 691 569 281 119 43 chr6 13994031 13994194 -135522843 - L1MC LINE L1 -2958 3188 3019 7 691 1189 126 5 11 chr6 13994194 13994378 -135522659 + B2_Mm2 SINE B2 4 186 -9 7 691 569 281 119 43 chr6 13994378 13994608 -135522429 - L1MC LINE L1 -3128 3018 2766 7 691 701 129 13 67 chr6 13994608 13994757 -135522280 - L1Md_F2 LINE L1 0 6582 6442 7 691 726 181 154 0 chr6 13994768 13994950 -135522087 + URR1A DNA MER1_type 17 226 0 7 691 330 284 88 25 chr6 13994950 13994998 -135522039 - CYRA11_Mm Unknown Y-chromosome -441 176 119 7 691 308 333 68 14 chr6 13995026 13995172 -135521865 - L1MEc LINE L1 -3495 3446 3293 7 691 354 355 64 21 chr6 13995204 13995440 -135521597 - L1MEc LINE L1 -4257 2765 2520 7 691 191 88 0 29 chr6 13995606 13995641 -135521396 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 691 401 307 48 41 chr6 13995674 13995697 -135521340 - B3 SINE B2 -27 189 167 7 691 255 31 0 0 chr6 13995697 13995729 -135521308 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 691 401 307 48 41 chr6 13995729 13995851 -135521186 - B3 SINE B2 -50 166 43 7 691 237 250 26 26 chr6 13996080 13996195 -135520842 - L1MEc LINE L1 -5121 1916 1802 7 691 21 0 0 0 chr6 13996340 13996361 -135520676 + AT_rich Low_complexity Low_complexity 1 21 0 7 691 763 335 31 50 chr6 13996512 13996895 -135520142 + MTEa LTR MaLR 1 376 -3 7 691 557 160 28 0 chr6 13998015 13998159 -135518878 + CT-rich Low_complexity Low_complexity 1 148 0 7 691 315 310 48 21 chr6 13998187 13998332 -135518705 - L1MEc LINE L1 -6239 184 36 7 691 411 287 6 62 chr6 13998537 13998697 -135518340 + Lx7 LINE L1 6096 6246 -1450 7 691 51 17 0 0 chr6 13998846 13998904 -135518133 + AT_rich Low_complexity Low_complexity 1 58 0 7 691 1179 114 32 5 chr6 13999282 13999467 -135517570 + B2_Mm2 SINE B2 5 194 -1 7 691 5411 125 56 5 chr6 14000782 14001565 -135515472 + Lx2 LINE L1 6057 6862 -135 1 691 204 40 0 0 chr6 14001565 14001590 -135515447 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 2 691 5411 125 56 5 chr6 14001590 14001697 -135515340 + Lx2 LINE L1 6863 6992 -5 1 691 27 0 0 0 chr6 14001697 14001724 -135515313 + AT_rich Low_complexity Low_complexity 1 27 0 3 691 3845 230 140 40 chr6 14002933 14004010 -135513027 - Lx7 LINE L1 0 7696 6506 4 691 4816 113 21 71 chr6 14004010 14004855 -135512182 - RLTR13B4 LTR ERVK 0 803 1 5 691 3845 230 140 40 chr6 14004855 14004912 -135512125 - Lx7 LINE L1 -1191 6505 6449 4 691 393 321 18 73 chr6 14004884 14005224 -135511813 - L1_Mur3 LINE L1 -6952 760 440 6 691 605 330 136 8 chr6 14005570 14005805 -135511232 + B4A SINE B4 2 266 -26 7 691 756 52 0 0 chr6 14005820 14005917 -135511120 + (TG)n Simple_repeat Simple_repeat 1 97 0 8 691 486 0 0 0 chr6 14005917 14005970 -135511067 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 691 2840 69 39 5 chr6 14007250 14007631 -135509406 + MTA_Mm LTR MaLR 1 394 -2 1 691 24 0 0 0 chr6 14007848 14007872 -135509165 + AT_rich Low_complexity Low_complexity 1 24 0 1 691 770 172 0 0 chr6 14008272 14008394 -135508643 + ORR1C2 LTR MaLR 2 123 -261 1 691 1477 188 111 18 chr6 14008413 14008755 -135508282 + ORR1C2 LTR MaLR 11 384 0 1 691 300 69 172 0 chr6 14008801 14008859 -135508178 + L1Md_F3 LINE L1 6517 6584 0 1 691 297 123 46 0 chr6 14009637 14009702 -135507335 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 691 476 324 22 22 chr6 14009900 14010039 -135506998 - B1F SINE Alu -5 144 6 1 691 233 409 62 8 chr6 14009937 14010065 -135506972 - B4 SINE B4 -95 197 63 1 691 420 268 72 108 chr6 14010305 14010833 -135506204 + L1_Mur3 LINE L1 1214 1722 -4158 1 691 773 221 101 14 chr6 14010816 14011040 -135505997 + Lx6 LINE L1 7042 7225 -235 1 691 238 330 72 0 chr6 14011120 14011217 -135505820 + Lx7 LINE L1 7193 7296 -400 2 691 189 74 0 0 chr6 14011242 14011269 -135505768 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 691 23 0 0 0 chr6 14011358 14011381 -135505656 + AT_rich Low_complexity Low_complexity 1 23 0 2 691 46 54 0 0 chr6 14011512 14011586 -135505451 + AT_rich Low_complexity Low_complexity 1 74 0 2 691 390 21 0 0 chr6 14011607 14011654 -135505383 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 691 25 31 0 0 chr6 14011681 14011713 -135505324 + AT_rich Low_complexity Low_complexity 1 32 0 2 691 1258 170 25 21 chr6 14012241 14012481 -135504556 - RMER6A LTR ERVK -7 749 509 2 691 1068 279 36 52 chr6 14012758 14013121 -135503916 + ORR1E LTR MaLR 1 357 -2 2 691 1178 97 12 0 chr6 14013389 14013554 -135503483 - B2_Mm2 SINE B2 -27 168 2 2 691 889 371 58 26 chr6 14013708 14014363 -135502674 + HERVL40-int LTR ERVL 1971 2646 -2884 2 691 186 43 0 0 chr6 14014411 14014434 -135502603 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 691 712 224 48 44 chr6 14014445 14014693 -135502344 + Lx9 LINE L1 7326 7574 -70 3 691 587 295 95 62 chr6 14014719 14015055 -135501982 + HERVL40-int LTR ERVL 2699 3045 -2485 2 691 780 138 0 0 chr6 14015157 14015287 -135501750 + (TCTA)n Simple_repeat Simple_repeat 1 130 0 3 691 532 162 7 51 chr6 14015320 14015457 -135501580 - Lx4A LINE L1 -3 7055 6925 3 691 31 0 0 0 chr6 14015586 14015617 -135501420 + AT_rich Low_complexity Low_complexity 1 31 0 3 691 21 82 0 0 chr6 14015883 14015932 -135501105 + AT_rich Low_complexity Low_complexity 1 49 0 3 691 447 252 61 0 chr6 14015953 14016052 -135500985 - ID_B1 SINE B4 -9 215 111 3 691 290 315 117 0 chr6 14016052 14016064 -135500973 - B1F1 SINE Alu -9 140 17 3 691 1592 98 52 83 chr6 14016181 14016460 -135500577 + L1Md_F2 LINE L1 6291 6563 -19 3 691 405 0 0 0 chr6 14016460 14016505 -135500532 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 691 218 233 0 0 chr6 14017450 14017493 -135499544 + A-rich Low_complexity Low_complexity 1 43 0 4 691 378 358 119 29 chr6 14017507 14017959 -135499078 - L1M5 LINE L1 -3408 2738 2246 4 691 213 152 22 0 chr6 14018156 14018202 -135498835 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 691 2751 153 60 10 chr6 14018375 14018876 -135498161 - RLTR11A LTR ERVK 0 528 3 4 691 22 0 0 0 chr6 14019133 14019155 -135497882 + AT_rich Low_complexity Low_complexity 1 22 0 4 691 405 0 0 0 chr6 14019289 14019334 -135497703 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 691 330 26 0 0 chr6 14019334 14019372 -135497665 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 691 396 216 234 44 chr6 14019436 14019731 -135497306 - Lx7 LINE L1 0 7696 7346 4 691 1820 262 12 48 chr6 14019994 14020499 -135496538 - Lx7 LINE L1 -395 7301 6815 4 86 32814 87 17 13 chr6 14020660 14026606 -135490431 - L1Md_F2 LINE L1 0 6582 613 4 692 3537 183 26 3 chr6 14026633 14027276 -135489761 - Lx2B LINE L1 -2 6998 6341 4 692 23 0 0 0 chr6 14027389 14027412 -135489625 + AT_rich Low_complexity Low_complexity 1 23 0 5 692 2273 90 9 61 chr6 14027412 14027757 -135489280 - ORR1A2 LTR MaLR 0 327 1 5 692 826 309 14 37 chr6 14027757 14028053 -135488984 - Lx5 LINE L1 -31 7429 7141 5 692 1274 266 18 0 chr6 14028094 14028372 -135488665 + ORR1B1 LTR MaLR 112 394 0 5 692 910 288 62 6 chr6 14028375 14028687 -135488350 - Lx5 LINE L1 -571 6889 6455 5 692 2981 32 0 0 chr6 14028814 14029160 -135487877 + ORR1A0 LTR MaLR 1 346 0 5 692 235 209 0 0 chr6 14029621 14029664 -135487373 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 692 43 20 0 0 chr6 14029758 14029808 -135487229 + AT_rich Low_complexity Low_complexity 1 50 0 5 692 22 0 0 0 chr6 14030515 14030537 -135486500 + AT_rich Low_complexity Low_complexity 1 22 0 5 692 621 219 70 22 chr6 14030590 14030819 -135486218 - Lx9 LINE L1 -7 7637 7398 5 692 204 179 0 0 chr6 14030993 14031032 -135486005 + T-rich Low_complexity Low_complexity 1 39 0 5 692 4121 88 14 10 chr6 14033493 14034070 -135482967 + L1_Mus4 LINE L1 6049 6627 -9 6 692 2877 28 42 6 chr6 14035043 14035397 -135481640 - IAPLTR1_Mm LTR ERVK 0 367 1 6 692 55068 23 14 14 chr6 14035397 14041872 -135475165 - IAPEz-int LTR ERVK 0 6481 8 6 692 2877 28 42 6 chr6 14041872 14042226 -135474811 - IAPLTR1_Mm LTR ERVK 0 367 1 6 692 338 298 58 0 chr6 14043160 14043281 -135473756 - MLT1D LTR MaLR -359 146 19 6 692 484 318 7 7 chr6 14043564 14043713 -135473324 - ID_B1 SINE B4 -7 217 69 6 692 2310 196 13 35 chr6 14044978 14045513 -135471524 + RLTR28 LTR ERVL 1 523 -1 6 692 299 214 67 11 chr6 14045877 14045967 -135471070 + Lx7 LINE L1 7602 7696 0 6 692 962 315 7 56 chr6 14045984 14046290 -135470747 + B4A SINE B4 2 292 0 6 692 247 191 54 87 chr6 14046704 14046796 -135470241 + Charlie8 DNA MER1_type 388 476 -1952 6 692 24 0 0 0 chr6 14047309 14047333 -135469704 + AT_rich Low_complexity Low_complexity 1 24 0 6 692 358 252 134 0 chr6 14047529 14047656 -135469381 + MIR SINE MIR 104 251 -17 6 692 405 0 0 0 chr6 14047904 14047949 -135469088 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 692 325 274 50 17 chr6 14048103 14048222 -135468815 + B3A SINE B2 25 147 -51 7 692 180 329 24 24 chr6 14049871 14049955 -135467082 - MIR SINE MIR -51 211 128 7 692 328 316 52 22 chr6 14050790 14050926 -135466111 + MLT1D LTR MaLR 364 503 -2 7 692 2247 133 1 0 chr6 14051179 14051538 -135465499 + Lx2B LINE L1 5746 6142 -858 7 692 1396 140 44 0 chr6 14051538 14051766 -135465271 + Lx2B LINE L1 6758 6995 -5 7 692 333 0 0 0 chr6 14051792 14051829 -135465208 + (TTA)n Simple_repeat Simple_repeat 2 38 0 7 692 372 43 0 0 chr6 14051830 14051876 -135465161 + (TATG)n Simple_repeat Simple_repeat 1 46 0 7 692 623 335 12 6 chr6 14051880 14052051 -135464986 - B3A SINE B2 -26 172 1 7 692 22 35 0 0 chr6 14052061 14052090 -135464947 + AT_rich Low_complexity Low_complexity 1 29 0 7 692 2670 219 26 14 chr6 14052153 14052719 -135464318 - Lx5 LINE L1 0 7050 6478 7 692 219 146 0 0 chr6 14052774 14052815 -135464222 + (TATAA)n Simple_repeat Simple_repeat 1 41 0 8 692 4625 51 2 7 chr6 14053549 14054139 -135462898 + L1Md_F2 LINE L1 4999 5585 -298 8 692 7820 61 1 4 chr6 14054140 14055139 -135461898 + L1Md_F2 LINE L1 5587 6582 0 8 692 256 103 17 17 chr6 14055164 14055223 -135461814 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 8 692 784 315 19 35 chr6 14055238 14055498 -135461539 + MTE2a LTR MaLR 119 374 -5 8 692 390 353 34 56 chr6 14056273 14056507 -135460530 + B4A SINE B4 58 286 -6 8 692 234 0 0 0 chr6 14056549 14056575 -135460462 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 692 453 354 97 41 chr6 14056636 14057077 -135459960 + MLT1E3 LTR MaLR 145 651 -2 8 692 275 259 67 56 chr6 14057642 14057732 -135459305 + MTEb LTR MaLR 1 91 -288 8 692 403 373 69 45 chr6 14057812 14058101 -135458936 + MTEb LTR MaLR 83 378 -1 8 692 406 285 114 55 chr6 14058510 14058729 -135458308 - MER68 LTR ERVL -45 518 287 8 692 268 274 143 50 chr6 14058741 14058853 -135458184 - MER68 LTR ERVL -362 201 79 8 692 3908 179 183 36 chr6 14058853 14059676 -135457361 + RLTR25A LTR ERVK 1 908 -195 8 692 189 0 0 0 chr6 14059676 14059697 -135457340 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 692 3908 179 183 36 chr6 14059697 14059835 -135457202 + RLTR25A LTR ERVK 909 1103 0 8 692 811 291 122 23 chr6 14059993 14060338 -135456699 - MTEb LTR MaLR 0 379 1 9 692 276 355 147 63 chr6 14060774 14061280 -135455757 - L2a LINE L2 -298 3128 2579 9 692 1152 62 6 0 chr6 14061280 14061442 -135455595 - L1Md_F2 LINE L1 -41 6541 6379 9 692 27 0 0 0 chr6 14061467 14061494 -135455543 + AT_rich Low_complexity Low_complexity 1 27 0 9 692 414 368 61 23 chr6 14061826 14062090 -135454947 - L2a LINE L2 -831 2588 2315 9 692 892 258 81 59 chr6 14062274 14062645 -135454392 - MTEb LTR MaLR 0 379 1 9 692 1731 311 107 17 chr6 14062651 14063306 -135453731 - MTEb-int LTR MaLR -7 1573 860 9 692 595 219 384 8 chr6 14063807 14064065 -135452972 + RMER1B Other Other 53 407 -659 9 692 1694 275 221 10 chr6 14064045 14065073 -135451964 + RMER1A Other Other 2 1024 -6 9 692 1416 337 74 115 chr6 14065110 14065371 -135451666 - MTEb-int LTR MaLR -747 833 639 9 692 315 0 0 0 chr6 14065371 14065406 -135451631 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 692 1416 337 74 115 chr6 14065406 14065993 -135451044 - MTEb-int LTR MaLR -942 638 20 9 692 782 273 144 29 chr6 14066011 14066191 -135450846 - MTEb LTR MaLR 0 379 166 9 692 465 19 0 0 chr6 14066191 14066245 -135450792 + (TC)n Simple_repeat Simple_repeat 2 55 0 9 692 782 273 144 29 chr6 14066245 14066404 -135450633 - MTEb LTR MaLR -214 165 1 9 692 441 0 0 0 chr6 14066765 14066814 -135450223 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 692 359 121 30 0 chr6 14067279 14067345 -135449692 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 1 692 22 35 0 0 chr6 14067597 14067626 -135449411 + AT_rich Low_complexity Low_complexity 1 29 0 1 692 816 103 27 7 chr6 14068044 14068190 -135448847 + (TTTCC)n Simple_repeat Simple_repeat 3 151 0 1 692 201 74 0 0 chr6 14068361 14068388 -135448649 + (A)n Simple_repeat Simple_repeat 1 27 0 1 692 268 145 0 16 chr6 14068674 14068737 -135448300 - Lx8 LINE L1 -2 7471 7410 1 692 243 152 0 0 chr6 14068831 14068877 -135448160 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 692 497 16 16 0 chr6 14068877 14068939 -135448098 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 692 254 57 0 0 chr6 14069642 14069677 -135447360 - U2 snRNA snRNA -152 36 2 1 692 3211 163 176 78 chr6 14070370 14071180 -135445857 + RMER19B LTR ERVK 1 890 -12 1 692 2401 114 26 3 chr6 14071314 14071665 -135445372 - RLTR10D LTR ERVK 0 359 1 1 692 191 314 34 23 chr6 14072253 14072341 -135444696 + L2b LINE L2 2996 3084 -291 1 692 24 65 0 16 chr6 14072362 14072401 -135444636 + AT_rich Low_complexity Low_complexity 1 39 0 1 692 3023 118 23 14 chr6 14072401 14072883 -135444154 - Lx3_Mus LINE L1 0 7009 6524 1 692 24 65 0 16 chr6 14072883 14072906 -135444131 + AT_rich Low_complexity Low_complexity 1 23 0 1 692 412 170 27 0 chr6 14072912 14073024 -135444013 - Lx9 LINE L1 -7 7637 7523 1 692 33547 72 2 3 chr6 14073026 14079217 -135437820 - L1Md_F2 LINE L1 0 6582 398 1 692 639 0 0 0 chr6 14079343 14079414 -135437623 + (TTC)n Simple_repeat Simple_repeat 3 73 0 1 692 447 267 82 61 chr6 14079526 14079757 -135437280 - MER67D LTR ERV1 -278 236 1 1 692 378 0 0 0 chr6 14079854 14079896 -135437141 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 692 180 77 0 0 chr6 14080309 14080335 -135436702 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 692 429 70 0 0 chr6 14081623 14081680 -135435357 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 692 354 45 0 0 chr6 14081670 14081714 -135435323 + (GGA)n Simple_repeat Simple_repeat 1 44 0 1 692 473 345 66 37 chr6 14081718 14081962 -135435075 - B4A SINE B4 -21 271 21 1 692 1417 247 40 42 chr6 14081996 14082099 -135434938 - RLTR16 LTR ERVK 0 505 402 1 692 189 74 0 0 chr6 14082099 14082126 -135434911 + (CG)n Simple_repeat Simple_repeat 1 27 0 1 692 405 0 0 0 chr6 14082126 14082170 -135434867 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 692 1417 247 40 42 chr6 14082170 14082567 -135434470 - RLTR16 LTR ERVK -104 401 7 1 692 390 21 0 0 chr6 14083436 14083483 -135433554 + (TATG)n Simple_repeat Simple_repeat 4 50 0 1 692 8371 61 0 0 chr6 14084236 14085359 -135431678 - L1Md_F2 LINE L1 -928 4955 3833 1 692 4939 60 0 0 chr6 14085363 14086011 -135431026 + L1Md_F2 LINE L1 4938 5585 -298 1 692 8002 48 4 1 chr6 14086012 14087005 -135430032 + L1Md_F2 LINE L1 5587 6582 0 1 692 1047 189 36 9 chr6 14087182 14087401 -135429636 - URR1A DNA MER1_type 0 226 2 1 692 584 285 25 0 chr6 14087470 14087628 -135429409 - Lx7 LINE L1 -755 6941 6780 1 692 734 292 47 21 chr6 14087632 14087971 -135429066 + Lx7 LINE L1 6961 7308 -388 1 692 235 263 116 0 chr6 14088027 14088122 -135428915 + Lx7 LINE L1 7576 7681 -15 1 692 363 271 0 0 chr6 14089298 14089368 -135427669 - ID4_ SINE ID -2 81 12 1 692 230 400 24 0 chr6 14090081 14090206 -135426831 - MLT1J2 LTR MaLR -64 384 257 1 692 456 100 0 0 chr6 14090406 14090486 -135426551 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 692 578 340 44 72 chr6 14090516 14090877 -135426160 - ORR1E LTR MaLR -2 357 7 1 692 212 320 0 0 chr6 14092872 14092950 -135424087 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 692 767 267 44 126 chr6 14092959 14092984 -135424053 - B4A SINE B4 0 292 269 1 692 1224 21 0 0 chr6 14092984 14093127 -135423910 + (GGGAGA)n Simple_repeat Simple_repeat 3 145 0 1 692 767 267 44 126 chr6 14093127 14093418 -135423619 - B4A SINE B4 -24 268 2 1 692 552 305 108 20 chr6 14093436 14093844 -135423193 - L1MD3 LINE L1 -1 7994 7551 1 692 819 187 0 22 chr6 14094100 14094237 -135422800 + B1_Mur3 SINE Alu 9 142 -7 1 692 469 177 9 9 chr6 14094801 14094915 -135422122 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 692 27 0 0 0 chr6 14094920 14094947 -135422090 + AT_rich Low_complexity Low_complexity 1 27 0 1 692 513 0 0 0 chr6 14095008 14095065 -135421972 + (TTCTG)n Simple_repeat Simple_repeat 5 61 0 1 692 409 294 95 7 chr6 14095135 14095272 -135421765 - Lx6 LINE L1 -331 7129 6981 1 692 652 285 40 18 chr6 14095276 14095502 -135421535 + Lx6 LINE L1 7136 7365 -95 1 692 384 22 0 0 chr6 14095502 14095547 -135421490 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 692 360 0 0 0 chr6 14095547 14095586 -135421451 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 692 652 285 40 18 chr6 14095586 14095630 -135421407 + Lx6 LINE L1 7366 7412 -48 1 692 423 0 0 0 chr6 14099137 14099184 -135417853 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 692 595 297 96 42 chr6 14099186 14099425 -135417612 - B4 SINE B4 -19 273 22 1 692 771 215 0 0 chr6 14099519 14099691 -135417346 + CT-rich Low_complexity Low_complexity 4 175 0 1 692 435 321 7 35 chr6 14099918 14100063 -135416974 - B4A SINE B4 -11 281 141 1 692 1652 194 12 25 chr6 14100090 14100412 -135416625 + ORR1C1 LTR MaLR 1 318 -60 1 692 329 330 9 37 chr6 14100442 14100549 -135416488 - B4A SINE B4 -162 130 27 1 692 392 0 21 0 chr6 14101066 14101114 -135415923 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 692 320 167 0 0 chr6 14101289 14101361 -135415676 - L1Md_F2 LINE L1 -1 6581 6510 1 692 1162 88 16 21 chr6 14101361 14101548 -135415489 - L1_Mus1 LINE L1 -458 6109 5924 1 692 198 174 0 0 chr6 14102182 14102228 -135414809 + T-rich Low_complexity Low_complexity 1 46 0 1 692 908 43 10 3 chr6 14102255 14102390 -135414647 - IAPEY3_LTR LTR ERVK -52 305 168 1 692 570 260 20 20 chr6 14103121 14103270 -135413767 - B1_Mur3 SINE Alu 0 149 1 1 692 29 28 0 0 chr6 14103280 14103316 -135413721 + AT_rich Low_complexity Low_complexity 1 36 0 1 692 273 346 29 0 chr6 14104461 14104565 -135412472 - L2 LINE L2 -343 3076 2970 1 692 6065 188 50 27 chr6 14104812 14106490 -135410547 - Lx5 LINE L1 -3 7047 5350 1 692 1239 109 5 5 chr6 14106506 14106690 -135410347 - B2_Mm1t SINE B2 -8 185 2 1 692 318 345 11 49 chr6 14107348 14107531 -135409506 - MIRb SINE MIR -12 256 81 1 692 22 80 0 0 chr6 14108702 14108752 -135408285 + AT_rich Low_complexity Low_complexity 1 50 0 1 692 22 0 0 0 chr6 14108825 14108847 -135408190 + AT_rich Low_complexity Low_complexity 1 22 0 1 692 3718 123 31 33 chr6 14109649 14110263 -135406774 + Lx LINE L1 6042 6654 0 1 692 902 265 16 33 chr6 14110593 14110835 -135406202 + MTEa LTR MaLR 1 238 -141 1 692 6120 68 8 0 chr6 14110835 14111748 -135405289 - L1_Mus3 LINE L1 -217 6421 5502 1 692 782 171 0 0 chr6 14111751 14111897 -135405140 - L1_Mus3 LINE L1 -533 5350 5205 1 692 1117 112 11 6 chr6 14111902 14112081 -135404956 + L1_Mus3 LINE L1 6452 6631 -7 1 692 1568 36 0 0 chr6 14112133 14112326 -135404711 - L1Md_F3 LINE L1 -15 6569 6377 1 692 5885 122 17 18 chr6 14112326 14113907 -135403130 - L1Md_A LINE L1 -4102 1781 203 1 692 256 153 13 65 chr6 14114256 14114333 -135402704 + T-rich Low_complexity Low_complexity 2 74 0 1 692 502 268 76 58 chr6 14115386 14115663 -135401374 + RLTR15 LTR ERVK 70 351 -8 1 692 367 358 22 114 chr6 14115777 14116004 -135401033 + MTEa LTR MaLR 1 206 -173 1 692 297 379 98 92 chr6 14116004 14116289 -135400748 + MLT2B5 LTR ERVL 1 515 0 1 692 500 226 48 68 chr6 14116988 14117135 -135399902 + MTC LTR MaLR 12 155 -266 1 692 21 71 0 0 chr6 14117282 14117324 -135399713 + AT_rich Low_complexity Low_complexity 1 42 0 1 692 283 390 6 0 chr6 14117335 14117494 -135399543 - L1MA9 LINE L1 -251 6061 5902 1 692 321 26 0 0 chr6 14117609 14117647 -135399390 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 1 692 229 302 11 23 chr6 14117652 14117740 -135399297 - L1MA9 LINE L1 -568 5744 5658 1 692 229 259 37 12 chr6 14117857 14117939 -135399098 - L1MA9 LINE L1 -918 5373 5290 1 692 1826 312 81 34 chr6 14118201 14119331 -135397706 - Lx7 LINE L1 -1785 5911 4722 1 692 1961 176 64 8 chr6 14119331 14119704 -135397333 - ORR1B1 LTR MaLR 0 394 1 1 692 1826 298 76 86 chr6 14119704 14119785 -135397252 - Lx7 LINE L1 -1391 4749 4682 1 692 1188 61 0 0 chr6 14119785 14119932 -135397105 - B1_Mm SINE Alu 0 147 1 1 692 711 298 76 86 chr6 14119932 14120002 -135397035 - Lx7 LINE L1 -1454 4686 4638 1 692 235 325 49 18 chr6 14120186 14120349 -135396688 - Lx7 LINE L1 -2053 4087 3920 1 692 300 326 74 16 chr6 14120419 14120662 -135396375 - Lx7 LINE L1 -2430 3710 3454 1 692 17543 142 189 20 chr6 14122935 14127499 -135389538 + Lx4A LINE L1 550 5944 -1114 1 692 529 188 101 8 chr6 14127551 14127680 -135389357 + Lx4A LINE L1 6918 7058 0 1 692 184 351 117 0 chr6 14127718 14127829 -135389208 - MIR SINE MIR -106 156 33 1 692 1715 194 81 18 chr6 14128352 14128746 -135388291 + MTC LTR MaLR 3 421 0 1 692 245 215 50 12 chr6 14129058 14129138 -135387899 + L1MA10 LINE L1 6245 6327 -7 1 692 393 353 33 19 chr6 14129179 14129450 -135387587 - MER20B DNA MER1_type -148 635 361 1 692 823 164 20 0 chr6 14129583 14129729 -135387308 + B1_Mur4 SINE Alu 2 150 0 1 692 985 330 85 3 chr6 14131627 14131946 -135385091 + ORR1D2 LTR MaLR 7 351 -19 1 692 22 0 0 0 chr6 14132079 14132101 -135384936 + AT_rich Low_complexity Low_complexity 1 22 0 1 692 180 0 0 0 chr6 14132200 14132220 -135384817 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 692 859 293 68 55 chr6 14132305 14132670 -135384367 + ORR1D2 LTR MaLR 1 370 0 1 692 4343 283 38 30 chr6 14132670 14133442 -135383595 + ORR1D2-int LTR MaLR 1 773 -597 1 692 2808 55 3 0 chr6 14133442 14133786 -135383251 + IAPLTR4 LTR ERVK 1 345 0 1 692 4343 283 38 30 chr6 14133786 14134304 -135382733 + ORR1D2-int LTR MaLR 774 1301 -69 1 692 1445 59 0 26 chr6 14134304 14134496 -135382541 + L1Md_F2 LINE L1 6088 6274 -308 1 692 250 91 55 0 chr6 14134488 14134543 -135382494 + L1Md_F2 LINE L1 6524 6581 -1 1 692 321 380 57 86 chr6 14135829 14136249 -135380788 - MLT1A1 LTR MaLR 0 408 1 1 692 290 229 163 20 chr6 14136563 14136661 -135380376 + PB1D10 SINE Alu 5 116 -1 1 692 259 242 0 108 chr6 14136979 14137081 -135379956 - Lx9 LINE L1 -170 7474 7384 1 692 878 216 0 0 chr6 14137080 14137233 -135379804 - Lx9 LINE L1 -1130 6514 6362 1 692 207 100 0 0 chr6 14137242 14137272 -135379765 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 692 2468 250 63 22 chr6 14137292 14138187 -135378850 - Lx9 LINE L1 -1639 6005 5039 1 692 696 303 65 25 chr6 14139503 14139781 -135377256 + B4A SINE B4 3 291 -1 1 692 885 37 0 0 chr6 14140100 14140209 -135376828 + (TG)n Simple_repeat Simple_repeat 2 110 0 1 692 303 324 93 82 chr6 14140215 14140601 -135376436 - MLT2B2 LTR ERVL -69 493 9 1 692 28 79 0 0 chr6 14142173 14142236 -135374801 + AT_rich Low_complexity Low_complexity 1 63 0 2 692 312 342 56 31 chr6 14142349 14142545 -135374492 + L1M4 LINE L1 4117 4317 -1829 2 692 983 342 69 7 chr6 14143066 14143473 -135373564 - Lx8 LINE L1 -148 7325 6894 2 692 1107 300 92 21 chr6 14143486 14143697 -135373340 - Lx8 LINE L1 -831 6642 6427 2 692 3357 30 2 2 chr6 14143697 14144093 -135372944 - MTA_Mm LTR MaLR 0 396 1 2 692 1107 300 92 21 chr6 14144093 14144361 -135372676 - Lx8 LINE L1 -1047 6426 6129 2 692 2792 204 57 85 chr6 14144731 14145532 -135371505 + ORR1C1-int LTR MaLR 793 1963 0 2 692 1331 224 93 25 chr6 14145533 14145886 -135371151 + ORR1C1 LTR MaLR 2 378 0 2 692 489 17 0 0 chr6 14145901 14145959 -135371078 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 692 485 335 102 32 chr6 14145962 14146178 -135370859 - B4 SINE B4 -29 263 33 2 692 1013 71 115 6 chr6 14146997 14147153 -135369884 - B2_Mm2 SINE B2 -16 179 7 2 692 218 247 25 49 chr6 14147081 14147162 -135369875 - B4A SINE B4 -213 79 1 2 692 258 219 8 98 chr6 14147678 14147719 -135369318 - Lx9 LINE L1 -136 7508 7477 2 692 240 86 0 0 chr6 14147719 14147754 -135369283 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 692 258 219 8 98 chr6 14147754 14147844 -135369193 - Lx9 LINE L1 -168 7476 7389 2 692 310 286 50 20 chr6 14147888 14147988 -135369049 - Lx9 LINE L1 -198 7446 7344 2 692 297 0 0 0 chr6 14148151 14148184 -135368853 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2 692 8087 49 5 1 chr6 14148184 14149744 -135367293 - L1Md_F2 LINE L1 -23 6559 4992 2 692 517 321 12 30 chr6 14149832 14149850 -135367187 - RSINE1 SINE B4 -1 164 151 2 692 360 43 0 0 chr6 14149850 14149896 -135367141 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 692 517 321 12 30 chr6 14149896 14150044 -135366993 - RSINE1 SINE B4 -15 150 1 2 86 19039 126 128 9 chr6 14150544 14156361 -135360676 - Lx3A LINE L1 0 6981 211 2 693 21 0 0 0 chr6 14158382 14158403 -135358634 + AT_rich Low_complexity Low_complexity 1 21 0 2 693 288 353 73 49 chr6 14158602 14158766 -135358271 - MER5B DNA MER1_type -3 175 8 2 693 289 396 14 0 chr6 14158865 14159009 -135358028 - MER5A DNA MER1_type -37 152 7 2 693 376 340 49 21 chr6 14159861 14160005 -135357032 - MER82 DNA MER2_type -116 537 390 2 693 271 238 97 60 chr6 14160007 14160141 -135356896 - Lx5 LINE L1 -1 7049 6911 2 693 189 107 0 0 chr6 14160175 14160203 -135356834 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 2 693 324 0 0 0 chr6 14160363 14160399 -135356638 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 693 306 360 16 0 chr6 14160962 14161087 -135355950 + MIRb SINE MIR 25 151 -117 2 693 387 0 0 0 chr6 14161955 14161998 -135355039 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 693 975 110 0 14 chr6 14162209 14162357 -135354680 - B1_Mus2 SINE Alu -1 146 1 2 693 365 248 0 120 chr6 14162245 14162378 -135354659 - MT2B LTR ERVL -337 264 148 2 693 277 353 79 43 chr6 14162435 14162574 -135354463 + LTR40b LTR ERVL 89 232 -230 2 693 328 360 67 39 chr6 14162852 14163213 -135353824 - L1M4 LINE L1 -2607 3539 3169 2 693 1813 243 67 2 chr6 14163226 14163659 -135353378 + MT2A LTR ERVL 1 461 -72 2 693 3555 72 2 2 chr6 14163951 14164410 -135352627 + L1_Mus1 LINE L1 6105 6563 -4 2 693 1589 226 44 5 chr6 14164440 14164823 -135352214 + Lx9 LINE L1 7100 7497 -147 2 693 282 198 25 0 chr6 14164844 14164925 -135352112 + Lx9 LINE L1 7556 7638 -6 2 693 285 349 26 3 chr6 14165751 14165897 -135351140 + L2c LINE L2 3010 3159 -228 2 693 1158 62 7 0 chr6 14167762 14167907 -135349130 + B1_Mus2 SINE Alu 2 147 0 2 693 180 125 0 0 chr6 14168021 14168053 -135348984 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 693 288 154 0 0 chr6 14168097 14168149 -135348888 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 693 2047 321 125 24 chr6 14168624 14169744 -135347293 - Lx8 LINE L1 -32 7441 6209 2 693 536 143 29 12 chr6 14169767 14169937 -135347100 + (TCTA)n Simple_repeat Simple_repeat 3 175 0 2 693 1972 237 57 9 chr6 14170124 14170723 -135346314 - Lx6 LINE L1 -528 7168 6514 2 693 2745 201 53 24 chr6 14170801 14171249 -135345788 - L1_Mur3 LINE L1 -1059 4821 4362 2 693 363 23 0 0 chr6 14171249 14171293 -135345744 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 693 2745 201 53 24 chr6 14171293 14171585 -135345452 - L1_Mur3 LINE L1 -1519 4361 4060 2 693 1022 252 201 23 chr6 14172087 14172436 -135344601 - MTD LTR MaLR -8 411 1 2 693 24 32 0 0 chr6 14172632 14172663 -135344374 + AT_rich Low_complexity Low_complexity 1 31 0 2 693 369 109 0 0 chr6 14173033 14173088 -135343949 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 2 693 241 302 0 0 chr6 14173091 14173154 -135343883 - RMER15 LTR ERVL -109 466 404 2 693 1336 306 106 25 chr6 14173351 14173955 -135343082 - Lx8 LINE L1 -398 7075 6423 2 693 25174 119 43 17 chr6 14173951 14175932 -135341105 - L1_Mus3 LINE L1 -1 6637 4632 2 693 213 39 0 0 chr6 14175932 14175958 -135341079 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 693 25174 141 50 11 chr6 14175958 14177460 -135339577 - L1_Mus3 LINE L1 -1252 4631 2958 2 693 2954 65 206 2 chr6 14177460 14177878 -135339159 + RLTR1C LTR ERV1 1 503 0 2 693 25174 145 41 12 chr6 14177878 14180173 -135336864 - L1_Mus3 LINE L1 -2926 2957 479 2 693 374 264 89 41 chr6 14180151 14180297 -135336740 - Lx8 LINE L1 -1063 6410 6258 2 693 270 266 88 0 chr6 14180671 14180784 -135336253 - Lx6 LINE L1 -28 7432 7310 2 693 601 327 0 12 chr6 14180782 14180952 -135336085 + Lx5 LINE L1 6729 6896 -154 2 693 339 329 73 47 chr6 14181756 14182056 -135334981 + L1MEg LINE L1 1184 1491 -4593 2 693 1217 47 0 0 chr6 14182082 14182230 -135334807 + B1_Mus1 SINE Alu 1 148 0 2 693 216 60 19 57 chr6 14182232 14182285 -135334752 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 693 260 276 0 26 chr6 14182422 14182500 -135334537 + L1_Rod LINE L1 2128 2203 -3644 2 693 23 33 0 0 chr6 14182510 14182540 -135334497 + AT_rich Low_complexity Low_complexity 1 30 0 2 693 277 306 93 52 chr6 14182822 14182873 -135334164 + L1M3 LINE L1 3102 3155 -2988 2 693 251 54 27 0 chr6 14182873 14182910 -135334127 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 693 277 306 93 52 chr6 14182910 14183143 -135333894 + L1M3 LINE L1 3156 3387 -2756 2 693 1133 179 150 88 chr6 14183143 14183497 -135333540 + ORR1C1 LTR MaLR 1 376 -2 2 693 447 301 85 49 chr6 14183497 14183994 -135333043 + L1M3 LINE L1 3388 3916 -2227 2 693 540 0 0 0 chr6 14185183 14185243 -135331794 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 693 966 256 99 4 chr6 14185244 14185507 -135331530 + MTD LTR MaLR 17 304 -115 2 693 1273 250 77 15 chr6 14186704 14187106 -135329931 - Lx9 LINE L1 -2 7642 7216 2 693 615 267 7 0 chr6 14187106 14187252 -135329785 + B1_Mur2 SINE Alu 1 147 -2 2 693 1249 256 57 40 chr6 14187376 14187559 -135329478 + MTD LTR MaLR 10 199 -220 2 693 180 0 0 0 chr6 14187559 14187579 -135329458 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 2 693 1249 256 57 40 chr6 14187579 14187798 -135329239 + MTD LTR MaLR 200 418 -1 2 693 1153 266 114 41 chr6 14188466 14188976 -135328061 - Lx9 LINE L1 -93 7551 7005 2 693 560 315 25 21 chr6 14190304 14190586 -135326451 + L1MC1 LINE L1 4613 4895 -1251 2 693 236 244 34 23 chr6 14190581 14190669 -135326368 + L1M2 LINE L1 4939 5027 -1116 2 693 720 285 44 48 chr6 14190855 14191268 -135325769 + L1MC1 LINE L1 4899 5309 -837 2 693 252 0 0 0 chr6 14191268 14191296 -135325741 + (A)n Simple_repeat Simple_repeat 1 28 0 2 693 776 262 55 23 chr6 14191322 14191643 -135325394 + L1MC1 LINE L1 5408 5752 -581 2 693 229 149 15 15 chr6 14191648 14191716 -135325321 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 693 396 235 74 57 chr6 14191846 14192022 -135325015 + L1MC1 LINE L1 5850 6028 -305 2 693 11466 60 1 0 chr6 14192837 14194991 -135322046 - L1Md_F2 LINE L1 -1 6581 4427 2 693 36997 59 1 13 chr6 14194989 14201349 -135315688 - L1Md_A LINE L1 0 6582 307 2 693 180 77 0 0 chr6 14201383 14201409 -135315628 + (T)n Simple_repeat Simple_repeat 1 26 0 2 693 33464 69 2 1 chr6 14201465 14206451 -135310586 + L1Md_F3 LINE L1 220 5583 -300 2 693 7939 42 10 1 chr6 14206452 14207421 -135309616 + L1Md_F3 LINE L1 5593 6570 -14 2 693 30 0 0 0 chr6 14207745 14207775 -135309262 + AT_rich Low_complexity Low_complexity 1 30 0 2 693 423 0 0 0 chr6 14208269 14208316 -135308721 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 693 223 333 72 16 chr6 14208544 14208669 -135308368 + L4 LINE RTE 312 443 -1586 2 693 1980 75 11 4 chr6 14208974 14209277 -135307760 + L1_Mus2 LINE L1 6295 6566 0 2 693 23 33 0 0 chr6 14209531 14209561 -135307476 + AT_rich Low_complexity Low_complexity 1 30 0 2 693 992 305 50 44 chr6 14209651 14210015 -135307022 - MTE2a LTR MaLR -13 366 1 2 693 714 216 0 7 chr6 14210342 14210491 -135306546 - B1_Mur3 SINE Alu -1 148 1 2 693 209 309 61 12 chr6 14210492 14210574 -135306463 + L4 LINE RTE 1284 1369 -660 2 693 210 71 0 0 chr6 14210639 14210667 -135306370 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 693 5843 239 48 13 chr6 14211033 14212376 -135304661 - Lx6 LINE L1 -2 7458 6068 2 693 183 246 88 0 chr6 14212909 14212966 -135304071 + L2 LINE L2 2758 2819 -600 2 693 1233 125 10 5 chr6 14213492 14213685 -135303352 - B2_Mm2 SINE B2 -1 194 1 2 693 264 59 0 0 chr6 14213700 14213734 -135303303 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 693 202 360 90 52 chr6 14213757 14214159 -135302878 + L2 LINE L2 2116 2532 -887 2 693 321 309 90 26 chr6 14214259 14214415 -135302622 + L2 LINE L2 2736 2901 -518 2 693 186 103 0 0 chr6 14214611 14214640 -135302397 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 693 966 100 0 0 chr6 14214651 14214791 -135302246 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 2 693 247 358 37 63 chr6 14214859 14215050 -135301987 - RLTR40 LTR ERVK -11 806 621 2 693 324 143 0 0 chr6 14215073 14215129 -135301908 + (ATGGTG)n Simple_repeat Simple_repeat 4 59 0 2 693 1326 249 115 40 chr6 14215130 14215661 -135301376 - RLTR40 LTR ERVK -231 586 16 2 693 2787 64 0 11 chr6 14216235 14216585 -135300452 - ORR1A1 LTR MaLR 0 346 1 2 693 255 31 0 0 chr6 14216812 14216844 -135300193 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 693 822 291 0 5 chr6 14217136 14217347 -135299690 + B3 SINE B2 2 211 -5 2 693 726 234 47 10 chr6 14217550 14217742 -135299295 + LTR90A LTR LTR 600 956 -20 2 693 252 275 48 36 chr6 14218194 14218277 -135298760 + MLT1B LTR MaLR 295 378 -12 2 693 627 297 132 31 chr6 14218343 14218426 -135298611 - ORR1E LTR MaLR 0 359 275 2 693 234 62 0 0 chr6 14218426 14218458 -135298579 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 693 627 297 132 31 chr6 14218458 14218700 -135298337 - ORR1E LTR MaLR -85 274 1 2 693 22 35 0 0 chr6 14218858 14218887 -135298150 + AT_rich Low_complexity Low_complexity 1 29 0 2 693 7447 109 9 2 chr6 14218950 14220641 -135296396 - L1_Mus3 LINE L1 -2 6636 4931 3 693 1832 112 108 27 chr6 14220642 14220997 -135296040 - RLTR9E LTR ERVK -39 370 1 3 693 18841 119 5 22 chr6 14220999 14223941 -135293096 - L1_Mus3 LINE L1 -949 4934 2042 3 693 246 81 0 0 chr6 14223941 14223978 -135293059 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 3 693 445 222 101 11 chr6 14223979 14224157 -135292880 - RMER17C LTR ERVK -138 272 79 3 693 18841 170 23 45 chr6 14224157 14225669 -135291368 - L1_Mus3 LINE L1 -3842 2040 503 3 693 500 195 18 0 chr6 14225732 14225845 -135291192 + CT-rich Low_complexity Low_complexity 3 117 0 3 693 240 346 38 23 chr6 14225845 14225978 -135291059 - B4A SINE B4 -148 144 10 3 693 3205 53 5 0 chr6 14226303 14226697 -135290340 + MTA_Mm LTR MaLR 1 396 0 3 693 8045 72 10 5 chr6 14226697 14227789 -135289248 + MTA_Mm-int LTR MaLR 1 1098 0 3 693 3150 46 8 2 chr6 14227789 14228183 -135288854 + MTA_Mm LTR MaLR 1 396 0 3 693 25 90 0 0 chr6 14229603 14229670 -135287367 + AT_rich Low_complexity Low_complexity 1 67 0 3 693 327 286 92 0 chr6 14229864 14229983 -135287054 + L1M5 LINE L1 2816 2945 -3201 3 693 210 171 0 0 chr6 14230026 14230067 -135286970 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 693 196 100 24 24 chr6 14230066 14230107 -135286930 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 3 693 464 335 82 61 chr6 14230211 14230491 -135286546 + MLT1H1 LTR MaLR 270 555 0 3 693 245 292 74 63 chr6 14230540 14230730 -135286307 - L1MC4 LINE L1 -34 8008 7817 3 693 1768 260 46 30 chr6 14230870 14231366 -135285671 + L1_Mur3 LINE L1 88 591 -7137 3 693 3650 233 28 23 chr6 14231349 14232450 -135284587 + L1_Mur3 LINE L1 409 1516 -4364 3 693 364 246 15 0 chr6 14232450 14232481 -135284556 + polypurine Low_complexity Low_complexity 2 32 0 3 693 1154 107 6 0 chr6 14232481 14232658 -135284379 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 693 364 246 15 0 chr6 14232658 14232756 -135284281 + GA-rich Low_complexity Low_complexity 33 132 0 3 693 909 141 57 0 chr6 14232787 14232964 -135284073 + L1_Mur3 LINE L1 1503 1689 -4191 3 693 2066 156 0 14 chr6 14232963 14233327 -135283710 + L1_Mur3 LINE L1 4415 4773 -1107 3 693 230 267 158 53 chr6 14233370 14233465 -135283572 + B1_Mm SINE Alu 2 106 -41 3 693 412 169 12 12 chr6 14233468 14233552 -135283485 + L1_Mur3 LINE L1 4808 4891 -989 3 693 1491 271 28 19 chr6 14233538 14233970 -135283067 + Lx7 LINE L1 6932 7367 -329 3 693 225 65 0 0 chr6 14234000 14234031 -135283006 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 3 693 282 301 87 48 chr6 14234033 14234263 -135282774 - L1MC4 LINE L1 -580 7462 7224 3 693 710 321 43 18 chr6 14234347 14234629 -135282408 + MLT1A0 LTR MaLR 77 365 0 3 693 5515 87 41 15 chr6 14234695 14235481 -135281556 - RLTR13C2 LTR ERVK 0 808 3 3 693 201 39 0 0 chr6 14235559 14235585 -135281452 + (TCTCTG)n Simple_repeat Simple_repeat 5 30 0 3 693 983 54 35 6 chr6 14235585 14235754 -135281283 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 3 693 588 111 26 0 chr6 14235766 14235883 -135281154 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 3 693 319 397 37 25 chr6 14235884 14236127 -135280910 - B4A SINE B4 -38 254 9 3 693 480 250 93 8 chr6 14236478 14236607 -135280430 - B1_Mm SINE Alu 0 147 8 3 693 348 301 73 33 chr6 14236607 14236628 -135280409 - ID_B1 SINE B4 0 223 68 3 693 313 330 11 32 chr6 14236977 14237071 -135279966 + RSINE1 SINE B4 69 160 -5 3 693 29 47 0 0 chr6 14237074 14237117 -135279920 + AT_rich Low_complexity Low_complexity 1 43 0 3 693 233 271 0 0 chr6 14237596 14237644 -135279393 + polypurine Low_complexity Low_complexity 3 50 0 3 693 741 304 130 9 chr6 14238054 14238370 -135278667 - Lx8 LINE L1 -2 7471 7118 3 693 367 348 112 31 chr6 14239042 14239362 -135277675 + MLT1A0 LTR MaLR 1 346 -19 3 693 21 71 0 0 chr6 14239690 14239732 -135277305 + AT_rich Low_complexity Low_complexity 1 42 0 3 693 357 196 32 11 chr6 14240573 14240666 -135276371 + L1MA9 LINE L1 6196 6290 -22 3 693 2383 179 37 6 chr6 14242106 14242501 -135274536 + RLTR16 LTR ERVK 1 401 -104 3 693 477 0 0 0 chr6 14242501 14242554 -135274483 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 693 2383 179 37 6 chr6 14242554 14242648 -135274389 + RLTR16 LTR ERVK 402 503 -2 3 693 225 239 42 83 chr6 14243792 14243888 -135273149 - Arthur1 DNA Tip100 -449 3498 3407 3 693 1231 68 85 0 chr6 14244967 14245143 -135271894 - B2_Mm2 SINE B2 -3 192 2 3 693 968 82 75 0 chr6 14245163 14245297 -135271740 - B1_Mus1 SINE Alu -1 147 4 3 693 449 282 105 0 chr6 14245567 14245776 -135271261 + L1M2 LINE L1 5097 5327 -816 3 693 1151 143 0 5 chr6 14248055 14248252 -135268785 - Lx2 LINE L1 -17 6980 6785 3 693 9963 156 8 58 chr6 14248252 14250859 -135266178 - Lx2 LINE L1 -354 6643 4205 3 693 7213 76 12 5 chr6 14250859 14251833 -135265204 + L1Md_F2 LINE L1 5588 6568 -14 3 693 9963 168 11 97 chr6 14251833 14252251 -135264786 - Lx2 LINE L1 -1679 4204 3812 3 693 2833 28 0 3 chr6 14252252 14252580 -135264457 - IAPLTR2b LTR ERVK 0 327 1 3 693 6442 57 12 11 chr6 14252582 14253410 -135263627 - IAPEz-int LTR ERVK -2 6479 5651 3 693 2648 73 0 3 chr6 14253403 14253746 -135263291 - IAPEz-int LTR ERVK -4781 1700 1359 3 693 3491 73 0 17 chr6 14253746 14254326 -135262711 - IAPEz-int LTR ERVK -5819 662 168 3 693 244 302 0 0 chr6 14254326 14254379 -135262658 - RLTR27 LTR ERVK -34 275 223 3 693 1306 117 39 38 chr6 14254379 14254823 -135262214 - IAPEz-int LTR ERVK -7312 269 9 3 693 2848 25 0 3 chr6 14254824 14255152 -135261885 - IAPLTR2b LTR ERVK 0 327 1 3 693 1493 161 45 48 chr6 14255152 14255504 -135261533 - L1_Mur1 LINE L1 -2067 3819 3469 3 693 4589 90 3 2 chr6 14255504 14256130 -135260907 - L1Md_F2 LINE L1 -13 6569 5943 3 693 2534 68 45 3 chr6 14256156 14256493 -135260544 + L1Md_F2 LINE L1 5587 5937 -645 3 693 4358 102 9 4 chr6 14256492 14257172 -135259865 - L1VL4 LINE L1 -433 3126 2444 3 693 382 13 105 13 chr6 14257192 14257268 -135259769 + (TTTTG)n Simple_repeat Simple_repeat 3 85 0 3 693 3327 62 0 0 chr6 14257835 14258254 -135258783 - L1Md_T LINE L1 -1 6581 6163 3 693 11667 43 1 1 chr6 14258338 14259760 -135257277 - L1_Mm LINE L1 -35 5848 4427 3 693 35468 77 1 13 chr6 14259759 14266099 -135250938 - L1Md_F2 LINE L1 -12 6570 307 3 693 24676 78 5 8 chr6 14266103 14270114 -135246923 - L1Md_A LINE L1 -1446 4437 442 3 693 305 0 0 0 chr6 14270103 14270138 -135246899 + L1Md_F LINE L1 970 1004 -5515 3 693 4748 113 19 1 chr6 14270143 14270217 -135246820 - L1VL4 LINE L1 -1903 1656 1583 3 693 315 0 0 0 chr6 14270217 14270252 -135246785 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 3 693 5463 145 29 4 chr6 14270252 14271829 -135245208 - L1VL4 LINE L1 -1977 1582 1 3 693 39 38 0 0 chr6 14272784 14272837 -135244200 + AT_rich Low_complexity Low_complexity 1 53 0 3 693 265 353 44 25 chr6 14273026 14273186 -135243851 - MIRb SINE MIR -40 228 66 3 693 471 107 0 0 chr6 14273693 14273777 -135243260 + (CAA)n Simple_repeat Simple_repeat 1 84 0 3 693 372 309 45 0 chr6 14275012 14275122 -135241915 + ID_B1 SINE B4 109 223 -1 3 693 707 161 7 0 chr6 14275140 14275277 -135241760 + GA-rich Low_complexity Low_complexity 3 140 0 3 693 477 0 0 0 chr6 14275673 14275726 -135241311 + (CATA)n Simple_repeat Simple_repeat 2 54 0 3 693 26 0 0 0 chr6 14276034 14276060 -135240977 + AT_rich Low_complexity Low_complexity 1 26 0 3 693 1450 101 129 21 chr6 14276489 14276722 -135240315 - L1Md_F2 LINE L1 -12 6570 6313 3 693 3058 89 2 0 chr6 14276716 14277131 -135239906 + L1Md_F2 LINE L1 5900 6315 -267 3 693 506 260 116 59 chr6 14277215 14277477 -135239560 - MTD LTR MaLR -2 417 111 3 693 248 276 54 54 chr6 14277478 14277570 -135239467 + B4A SINE B4 111 202 -90 3 693 623 298 82 39 chr6 14279324 14279785 -135237252 - L1ME1 LINE L1 -30 6149 5669 3 693 3281 267 115 43 chr6 14279902 14280327 -135236710 - RLTR22_Mus LTR ERVK -40 1768 1292 3 693 576 42 0 0 chr6 14280327 14280398 -135236639 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 693 3281 267 97 41 chr6 14280398 14281609 -135235428 - RLTR22_Mus LTR ERVK -517 1291 16 3 693 1073 294 11 19 chr6 14281613 14281940 -135235097 + MTE2b LTR MaLR 25 345 -34 3 693 1272 296 77 25 chr6 14281973 14282417 -135234620 + MTE-int LTR MaLR 1 467 -1113 3 693 342 0 0 0 chr6 14282444 14282482 -135234555 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 693 590 340 5 50 chr6 14282565 14282785 -135234252 - MTE-int LTR MaLR -490 1090 881 3 693 570 29 0 0 chr6 14282865 14282933 -135234104 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 693 21 0 0 0 chr6 14283018 14283039 -135233998 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 253 264 18 28 chr6 14283098 14283207 -135233830 + (TATG)n Simple_repeat Simple_repeat 2 109 0 3 693 521 386 26 0 chr6 14283208 14283397 -135233640 - B4A SINE B4 -88 204 11 3 693 387 293 40 63 chr6 14283440 14283615 -135233422 - L1MEc LINE L1 -4515 1885 1715 3 693 255 358 36 9 chr6 14283687 14283797 -135233240 - Lx8 LINE L1 -198 7275 7163 3 693 263 49 24 0 chr6 14284021 14284062 -135232975 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 86 2832 209 96 14 chr6 14286125 14286921 -135230116 + Lx7 LINE L1 2271 3131 -2749 3 694 496 219 0 85 chr6 14286910 14287040 -135229997 + Lx7 LINE L1 3444 3562 -2315 3 694 2028 152 94 0 chr6 14287042 14287444 -135229593 - BGLII_A LTR ERVK -2 443 4 3 694 238 56 28 0 chr6 14287450 14287486 -135229551 + L1_Mur1 LINE L1 2825 2861 -3025 3 694 255 135 38 19 chr6 14287454 14287507 -135229530 + L1_Mm LINE L1 2827 2880 -3003 3 694 5468 230 45 68 chr6 14287485 14288553 -135228484 + Lx7 LINE L1 4757 5781 -105 3 694 3592 165 43 11 chr6 14288553 14289202 -135227835 + Lx3B LINE L1 6301 6970 -3 3 694 5468 246 79 52 chr6 14289202 14290735 -135226302 + Lx7 LINE L1 5778 7361 -335 3 694 35 24 0 0 chr6 14290738 14290780 -135226257 + AT_rich Low_complexity Low_complexity 1 42 0 3 694 216 0 0 0 chr6 14290787 14290811 -135226226 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 3 694 927 93 0 0 chr6 14290813 14290942 -135226095 - B1_Mus1 SINE Alu -6 142 14 3 694 1108 163 0 5 chr6 14290959 14291163 -135225874 - Lx LINE L1 -7 6647 6445 3 694 1384 195 9 22 chr6 14291185 14291500 -135225537 + Lx7 LINE L1 7386 7696 0 3 694 228 86 0 0 chr6 14291502 14291537 -135225500 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 694 3352 230 88 22 chr6 14291790 14291889 -135225148 + ORR1B1-int LTR MaLR 217 316 -1193 3 694 252 0 0 0 chr6 14291889 14291917 -135225120 + (TTG)n Simple_repeat Simple_repeat 3 30 0 3 694 3352 230 88 22 chr6 14291917 14292725 -135224312 + ORR1B1-int LTR MaLR 317 1183 -326 3 694 1329 103 44 0 chr6 14292726 14292930 -135224107 + ORR1B1 LTR MaLR 181 393 -1 3 694 1545 294 112 16 chr6 14293386 14294054 -135222983 - Lx8 LINE L1 0 7473 6742 3 694 390 253 84 0 chr6 14294594 14294689 -135222348 - PB1D10 SINE Alu -10 107 5 3 694 287 318 23 31 chr6 14295164 14295294 -135221743 + B4 SINE B4 11 139 -153 3 694 2616 71 3 38 chr6 14295529 14295897 -135221140 - L1_Mus2 LINE L1 0 6566 6212 3 694 22 70 0 0 chr6 14296222 14296265 -135220772 + AT_rich Low_complexity Low_complexity 1 43 0 3 694 281 363 95 82 chr6 14296918 14297149 -135219888 - B4 SINE B4 -24 268 35 3 694 261 83 0 0 chr6 14297230 14297266 -135219771 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 694 214 300 62 0 chr6 14297374 14297454 -135219583 + L2 LINE L2 564 648 -2771 3 694 601 286 100 20 chr6 14297619 14297819 -135219218 - B3 SINE B2 0 216 1 3 694 367 267 59 0 chr6 14298659 14298760 -135218277 + MLT1A0 LTR MaLR 3 109 -256 4 694 401 245 31 0 chr6 14299786 14299884 -135217153 + ORR1E LTR MaLR 1 101 -258 4 694 245 75 0 24 chr6 14300380 14300421 -135216616 + (TTA)n Simple_repeat Simple_repeat 1 40 0 4 694 1094 66 0 0 chr6 14300926 14301063 -135215974 - B1_Mus2 SINE Alu -9 138 2 4 694 351 302 27 27 chr6 14301112 14301299 -135215738 + RLTR15 LTR ERVK 79 265 -94 4 694 30 0 0 0 chr6 14301857 14301887 -135215150 + AT_rich Low_complexity Low_complexity 1 30 0 4 694 474 269 58 39 chr6 14301937 14302142 -135214895 - Charlie4a DNA MER1_type -294 214 6 4 694 23 54 0 0 chr6 14304962 14304999 -135212038 + AT_rich Low_complexity Low_complexity 1 37 0 4 694 183 308 126 15 chr6 14305128 14305263 -135211774 - L4 LINE RTE -1248 781 632 4 694 2976 281 73 87 chr6 14305393 14307134 -135209903 - Lx6 LINE L1 0 7460 5745 4 694 641 284 105 33 chr6 14307331 14307775 -135209262 + L1MA4A LINE L1 5398 5888 -412 4 694 231 308 37 49 chr6 14308909 14308991 -135208046 + ID4 SINE ID 2 82 -1 4 694 324 0 0 0 chr6 14310027 14310063 -135206974 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 694 411 322 139 47 chr6 14310650 14311159 -135205878 + L1M4 LINE L1 4007 4562 -1584 4 694 514 165 17 17 chr6 14312203 14312299 -135204738 + (CATA)n Simple_repeat Simple_repeat 2 99 0 4 694 995 129 6 0 chr6 14312299 14312477 -135204560 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 694 514 165 17 17 chr6 14312477 14312497 -135204540 + (CATA)n Simple_repeat Simple_repeat 4 22 0 4 694 1164 111 0 0 chr6 14312503 14312683 -135204354 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 694 247 200 0 0 chr6 14312848 14312888 -135204149 - Lx7 LINE L1 -460 7236 7197 4 694 5000 94 7 7 chr6 14312886 14313602 -135203435 - L1_Mur1 LINE L1 -296 5590 4875 4 694 272 25 0 0 chr6 14313599 14313639 -135203398 + L1_Mur1 LINE L1 4838 4877 -1009 4 694 2068 247 39 22 chr6 14313632 14314166 -135202871 - Lx9 LINE L1 -442 7202 6660 4 694 396 0 0 0 chr6 14314279 14314323 -135202714 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 694 209 196 20 0 chr6 14314330 14314381 -135202656 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 694 1721 184 28 0 chr6 14314808 14315128 -135201909 - ORR1A4 LTR MaLR 0 329 1 4 694 22 0 0 0 chr6 14316133 14316155 -135200882 + AT_rich Low_complexity Low_complexity 1 22 0 4 694 558 144 22 0 chr6 14316432 14316522 -135200515 + RMER21B LTR ERV1 1 92 -750 4 694 2741 225 11 37 chr6 14316522 14317137 -135199900 + RMER21B LTR ERV1 242 840 -2 4 694 329 99 49 0 chr6 14317326 14317407 -135199630 + (CAAAAA)n Simple_repeat Simple_repeat 3 87 0 4 694 486 366 94 11 chr6 14317555 14317842 -135199195 - MLT1C LTR MaLR -10 457 147 4 694 258 174 0 0 chr6 14318630 14318676 -135198361 + B3 SINE B2 161 206 -10 4 694 295 275 109 57 chr6 14319404 14319606 -135197431 + MER67A LTR ERV1 1 284 -259 4 694 606 258 21 41 chr6 14320364 14320558 -135196479 + Lx6 LINE L1 7245 7434 -26 4 694 909 211 129 0 chr6 14320660 14320854 -135196183 + URR1A DNA MER1_type 8 226 0 4 694 342 0 0 0 chr6 14321091 14321129 -135195908 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 694 432 99 0 0 chr6 14321248 14321319 -135195718 + (CTA)n Simple_repeat Simple_repeat 1 71 0 4 694 28 29 0 0 chr6 14321326 14321361 -135195676 + AT_rich Low_complexity Low_complexity 1 35 0 4 694 288 70 0 0 chr6 14321450 14321493 -135195544 + (CAAG)n Simple_repeat Simple_repeat 2 44 0 4 694 32516 84 5 7 chr6 14321499 14326678 -135190359 + L1Md_F2 LINE L1 416 5586 -297 4 694 7704 63 0 0 chr6 14326678 14327655 -135189382 + L1Md_F2 LINE L1 5587 6563 -19 4 694 186 43 0 0 chr6 14327658 14327681 -135189356 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 4 694 24 67 0 0 chr6 14327817 14327862 -135189175 + AT_rich Low_complexity Low_complexity 1 45 0 4 694 1017 55 0 0 chr6 14328983 14329111 -135187926 - L1_Mm LINE L1 -3430 2453 2326 4 694 2808 69 76 12 chr6 14329111 14329520 -135187517 + L1Md_F2 LINE L1 6136 6570 -12 4 694 2030 299 83 17 chr6 14329623 14330231 -135186806 + L1_Mur3 LINE L1 262 906 -6806 4 694 2134 119 65 6 chr6 14330231 14330568 -135186469 - IAPEY2_LTR LTR ERVK 0 357 1 4 694 2030 299 83 17 chr6 14330568 14330876 -135186161 + L1_Mur3 LINE L1 907 1238 -6474 4 694 17827 99 12 11 chr6 14330886 14333590 -135183447 - Lx3_Mus LINE L1 -1080 5929 3226 4 694 277 352 19 19 chr6 14333722 14333829 -135183208 - MER58B DNA MER1_type -66 275 169 4 694 268 259 24 104 chr6 14333940 14334065 -135182972 - RMER30 DNA MER1_type -80 122 8 4 694 457 335 23 0 chr6 14334412 14334588 -135182449 - B3A SINE B2 -18 180 1 4 694 224 297 10 10 chr6 14335686 14335788 -135181249 + (TG)n Simple_repeat Simple_repeat 1 102 0 4 694 297 0 0 0 chr6 14335860 14335893 -135181144 + (ATG)n Simple_repeat Simple_repeat 3 35 0 4 694 423 0 0 0 chr6 14335893 14335940 -135181097 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 694 495 0 0 0 chr6 14336154 14336209 -135180828 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 694 5637 109 65 10 chr6 14336238 14337118 -135179919 + Lx LINE L1 5716 6643 -11 4 694 213 39 0 0 chr6 14337118 14337144 -135179893 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 694 26 30 0 0 chr6 14337145 14337178 -135179859 + AT_rich Low_complexity Low_complexity 1 33 0 4 694 1799 325 113 30 chr6 14337181 14338151 -135178886 - Lx8 LINE L1 -235 7238 6188 4 694 424 267 26 16 chr6 14339158 14339326 -135177711 - Lx8 LINE L1 -1577 5896 5697 4 694 201 258 79 16 chr6 14339627 14339690 -135177347 + L4 LINE RTE 1080 1146 -883 4 694 551 304 81 31 chr6 14340059 14340440 -135176597 - Lx8 LINE L1 -516 5364 4965 4 694 206 277 15 0 chr6 14341018 14341083 -135175954 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 694 839 176 48 27 chr6 14341790 14341977 -135175060 + B2_Mm2 SINE B2 1 191 -4 4 694 3668 108 12 22 chr6 14342167 14342531 -135174506 + Lx LINE L1 756 1121 -5536 4 694 1645 26 0 0 chr6 14342531 14342722 -135174315 + B2_Mm1t SINE B2 2 192 -1 4 694 14791 160 68 92 chr6 14342722 14343389 -135173648 + Lx LINE L1 1122 1535 -4351 4 694 2145 85 25 9 chr6 14343389 14343709 -135173328 + L1_Mus3 LINE L1 6314 6638 0 4 694 15400 177 112 84 chr6 14343709 14345333 -135171704 + Lx LINE L1 1511 3452 -2434 4 694 1906 128 41 20 chr6 14345333 14345670 -135171367 - IAPEY_LTR LTR ERVK 0 385 51 4 694 15400 177 112 84 chr6 14345670 14345697 -135171340 + Lx LINE L1 3453 3486 -2400 4 694 326 42 21 0 chr6 14345697 14345745 -135171292 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 694 15400 174 84 59 chr6 14345745 14348763 -135168274 + Lx LINE L1 3484 6653 -1 4 694 22 35 0 0 chr6 14348894 14348923 -135168114 + AT_rich Low_complexity Low_complexity 1 29 0 4 694 816 94 148 0 chr6 14350243 14350371 -135166666 - B1_Mm SINE Alu 0 147 1 4 694 21 36 0 0 chr6 14350498 14350526 -135166511 + AT_rich Low_complexity Low_complexity 1 28 0 4 694 225 269 13 0 chr6 14350688 14350766 -135166271 - L1MA8 LINE L1 -121 6179 6101 4 694 672 263 40 17 chr6 14350812 14350986 -135166051 + B3 SINE B2 1 178 -38 4 694 386 319 89 31 chr6 14351026 14351426 -135165611 - L1MA8 LINE L1 -232 6068 5632 4 694 234 338 26 105 chr6 14351433 14351585 -135165452 - MTE-int LTR MaLR -149 1431 1292 4 694 587 253 99 29 chr6 14352456 14352627 -135164410 - 7SLRNA srpRNA srpRNA -91 223 41 4 694 276 98 0 19 chr6 14353626 14353678 -135163359 + L1Md_F2 LINE L1 6522 6572 -10 4 694 62 68 0 0 chr6 14353848 14353966 -135163071 + AT_rich Low_complexity Low_complexity 1 118 0 4 694 339 44 0 0 chr6 14354045 14354090 -135162947 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 694 254 322 0 0 chr6 14354092 14354235 -135162802 + A-rich Low_complexity Low_complexity 1 143 0 4 694 401 278 106 37 chr6 14354235 14354452 -135162585 - Lx7 LINE L1 -385 7311 7080 4 694 210 171 0 0 chr6 14354714 14354755 -135162282 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 694 212 143 24 0 chr6 14354983 14355025 -135162012 + (TTG)n Simple_repeat Simple_repeat 2 44 0 4 694 378 42 0 0 chr6 14355026 14355074 -135161963 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 694 271 346 75 19 chr6 14355076 14355182 -135161855 - RSINE1 SINE B4 -25 140 29 4 694 22 0 0 0 chr6 14355425 14355447 -135161590 + AT_rich Low_complexity Low_complexity 1 22 0 4 694 269 370 30 0 chr6 14355573 14355673 -135161364 - PB1D7 SINE Alu -6 114 12 4 694 22 0 0 0 chr6 14355751 14355773 -135161264 + AT_rich Low_complexity Low_complexity 1 22 0 4 694 759 77 31 0 chr6 14355789 14355919 -135161118 - Lx3_Mus LINE L1 0 7009 6876 4 694 4094 179 29 26 chr6 14355919 14356755 -135160282 - Lx4B LINE L1 -11 7047 6210 4 694 25 51 0 0 chr6 14358322 14358361 -135158676 + AT_rich Low_complexity Low_complexity 1 39 0 4 694 1031 296 29 75 chr6 14361110 14361658 -135155379 - L1_Mur3 LINE L1 -2452 3428 2898 4 694 2877 169 15 8 chr6 14361658 14362176 -135154861 - Lx3A LINE L1 -7 6974 6453 4 694 1031 296 29 75 chr6 14362176 14362484 -135154553 - L1_Mur3 LINE L1 -2983 2897 2611 4 694 234 0 0 0 chr6 14362773 14362799 -135154238 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 694 4538 160 22 58 chr6 14363016 14363944 -135153093 + RMER17A2 LTR ERVK 1 894 -12 4 694 279 308 131 71 chr6 14364213 14364381 -135152656 - B4A SINE B4 -8 284 107 4 694 3762 206 70 19 chr6 14364393 14364523 -135152514 + RMER13A LTR ERVK 1 132 -728 4 694 450 0 0 0 chr6 14364523 14364573 -135152464 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 694 3762 206 70 19 chr6 14364573 14365261 -135151776 + RMER13A LTR ERVK 133 859 -1 4 694 2210 71 0 0 chr6 14366161 14366441 -135150596 - L1_Mus4 LINE L1 -312 6324 6045 4 694 2004 102 0 3 chr6 14366441 14366727 -135150310 + L1_Mus4 LINE L1 6336 6620 -16 4 694 919 296 87 45 chr6 14367087 14367248 -135149789 + MTEa LTR MaLR 8 167 -212 4 694 261 0 0 0 chr6 14367248 14367277 -135149760 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 4 694 919 296 87 45 chr6 14367277 14367472 -135149565 + MTEa LTR MaLR 168 379 0 4 694 245 274 107 36 chr6 14367493 14367633 -135149404 + L1MC5 LINE L1 6718 6867 -1094 4 694 235 203 0 33 chr6 14367981 14368042 -135148995 + (TCTCTG)n Simple_repeat Simple_repeat 6 64 0 4 694 333 68 0 0 chr6 14368070 14368114 -135148923 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 694 2167 82 0 0 chr6 14368797 14369079 -135147958 - L1_Mus4 LINE L1 -312 6324 6043 4 694 23 33 0 0 chr6 14369296 14369326 -135147711 + AT_rich Low_complexity Low_complexity 1 30 0 4 694 1501 62 0 5 chr6 14369498 14369692 -135147345 - B2_Mm1t SINE B2 0 193 1 5 694 456 331 13 65 chr6 14369776 14369931 -135147106 + B3A SINE B2 1 147 -51 5 694 545 209 121 43 chr6 14369935 14370075 -135146962 - RLTR25A LTR ERVK -2 1101 951 5 694 455 163 0 14 chr6 14370110 14370253 -135146784 + (CAGA)n Simple_repeat Simple_repeat 4 144 0 5 694 2055 157 12 13 chr6 14370260 14370650 -135146387 - RLTR25A LTR ERVK -247 856 386 5 694 473 0 18 0 chr6 14371021 14371078 -135145959 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 694 240 130 0 0 chr6 14372144 14372190 -135144847 + (GTTTG)n Simple_repeat Simple_repeat 4 49 0 5 694 1132 82 0 0 chr6 14372190 14372336 -135144701 - B1_Mus1 SINE Alu 0 148 3 5 694 274 179 100 43 chr6 14372451 14372521 -135144516 - RMER10A LTR ERVL -45 397 324 5 694 718 345 94 31 chr6 14372713 14373224 -135143813 - Tigger6a DNA MER2_type -519 564 22 5 694 440 322 0 0 chr6 14373216 14373331 -135143706 - B3 SINE B2 -93 123 9 5 694 52 74 0 0 chr6 14373628 14373736 -135143301 + AT_rich Low_complexity Low_complexity 1 108 0 5 694 26 74 0 0 chr6 14373882 14373936 -135143101 + AT_rich Low_complexity Low_complexity 1 54 0 5 694 21 36 0 0 chr6 14374187 14374215 -135142822 + AT_rich Low_complexity Low_complexity 1 28 0 5 694 210 136 0 0 chr6 14374283 14374327 -135142710 + (CAGAGA)n Simple_repeat Simple_repeat 1 44 0 5 694 288 0 0 0 chr6 14374346 14374378 -135142659 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 694 22 35 0 0 chr6 14374564 14374593 -135142444 + AT_rich Low_complexity Low_complexity 1 29 0 5 694 739 93 61 15 chr6 14374804 14374935 -135142102 - L1Md_F2 LINE L1 0 6582 6446 5 694 225 128 26 0 chr6 14375179 14375218 -135141819 - L1_Mus1 LINE L1 -118 6449 6410 5 694 574 185 61 17 chr6 14376897 14377046 -135139991 - RMER1C Other Other 0 1342 1204 5 694 264 235 0 0 chr6 14377086 14377154 -135139883 + GA-rich Low_complexity Low_complexity 6 73 0 5 694 29 0 0 0 chr6 14377496 14377525 -135139512 + AT_rich Low_complexity Low_complexity 1 29 0 5 694 4599 150 19 14 chr6 14377993 14379497 -135137540 + L1VL4 LINE L1 193 1703 -1856 5 694 594 137 53 0 chr6 14379488 14379583 -135137454 + L1_Mur2 LINE L1 3746 3845 -2032 5 694 1878 175 46 3 chr6 14379584 14379950 -135137087 + Lx2B LINE L1 6618 6999 -1 5 694 418 168 181 38 chr6 14380322 14380427 -135136610 + MTC LTR MaLR 1 120 -301 5 694 217 175 63 0 chr6 14380477 14380540 -135136497 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 5 694 7665 86 11 12 chr6 14380542 14381857 -135135180 - L1_Mus3 LINE L1 0 6638 5326 5 694 1325 231 50 16 chr6 14381857 14382160 -135134877 + MTC LTR MaLR 106 418 -3 5 694 596 296 119 17 chr6 14382579 14382839 -135134198 + Lx2B LINE L1 6693 6979 -18 5 694 4685 199 12 24 chr6 14382839 14384388 -135132649 - Lx4B LINE L1 -622 6436 4898 5 694 2186 141 52 20 chr6 14384385 14384701 -135132336 + L1_Mur2 LINE L1 4051 4387 -1490 5 694 1847 176 6 0 chr6 14384701 14385024 -135132013 - ORR1A2 LTR MaLR 0 327 3 5 694 2186 141 52 20 chr6 14385024 14385111 -135131926 + L1_Mur2 LINE L1 4388 4467 -1410 5 694 755 240 96 5 chr6 14385111 14385308 -135131729 - MTC LTR MaLR -202 219 5 5 694 1049 98 12 12 chr6 14385574 14385739 -135131298 + L1Md_F2 LINE L1 6418 6582 0 5 694 1111 256 71 20 chr6 14386947 14387301 -135129736 - ORR1D1 LTR MaLR 0 374 3 5 694 895 317 101 20 chr6 14387469 14388200 -135128837 - L1M2 LINE L1 -1316 4827 4038 5 694 5641 78 15 30 chr6 14389180 14389991 -135127046 - L1Md_F2 LINE L1 0 6582 5784 5 694 37507 31 1 6 chr6 14390709 14396877 -135120160 - L1Md_T LINE L1 -1 6581 452 5 694 4525 153 19 10 chr6 14396993 14397777 -135119260 + Lx3B LINE L1 6182 6972 -1 5 694 22 35 0 0 chr6 14397893 14397922 -135119115 + AT_rich Low_complexity Low_complexity 1 29 0 5 694 217 289 146 62 chr6 14398157 14398253 -135118784 + PB1D10 SINE Alu 1 104 -13 5 694 932 305 32 10 chr6 14398410 14398724 -135118313 - Lx8 LINE L1 -927 6546 6226 5 694 1266 331 114 3 chr6 14398724 14399399 -135117638 + Lx8 LINE L1 6585 7334 -139 5 694 1652 58 0 0 chr6 14399497 14399705 -135117332 + L1_Mus1 LINE L1 6360 6567 0 5 694 1969 265 163 87 chr6 14400113 14401182 -135115855 + RLTR22_Mus LTR ERVK 1 1181 -627 5 694 4439 42 35 0 chr6 14401182 14401729 -135115308 - L1Md_F2 LINE L1 0 6582 6017 5 694 1969 268 171 84 chr6 14401729 14402191 -135114846 + RLTR22_Mus LTR ERVK 739 1590 -218 5 694 577 259 35 64 chr6 14402376 14402578 -135114459 + RMER12 LTR ERVK 1121 1316 -6 5 694 826 220 17 0 chr6 14402715 14402892 -135114145 + URR1A DNA MER1_type 46 225 -1 5 694 305 282 72 24 chr6 14402745 14402912 -135114125 - CYRA11_Mm Unknown Y-chromosome -297 320 146 5 694 11558 170 40 24 chr6 14402945 14403039 -135113998 + L1_Mur1 LINE L1 1907 2008 -3878 5 694 395 63 16 0 chr6 14403039 14403102 -135113935 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 5 694 11558 170 40 24 chr6 14403102 14403296 -135113741 + L1_Mur1 LINE L1 2009 2204 -3682 5 694 2781 102 8 2 chr6 14403296 14403697 -135113340 - RLTR9D LTR ERVK 0 403 1 5 694 11558 170 40 24 chr6 14403697 14404437 -135112600 + L1_Mur1 LINE L1 2205 2955 -2931 5 694 2417 116 5 16 chr6 14404437 14404814 -135112223 + L1_Mus4 LINE L1 6264 6636 0 5 694 11558 170 40 24 chr6 14404814 14406334 -135110703 + L1_Mur1 LINE L1 2956 4496 -1390 5 694 1835 197 57 2 chr6 14406341 14406768 -135110269 + Lx3C LINE L1 6544 7000 0 5 694 534 200 19 9 chr6 14407044 14407150 -135109887 - U6 snRNA snRNA 0 107 1 5 694 731 330 64 4 chr6 14407555 14407626 -135109411 - B4 SINE B4 -4 288 217 5 694 628 23 23 0 chr6 14407626 14407712 -135109325 + (TTTTG)n Simple_repeat Simple_repeat 3 90 0 5 694 731 330 64 4 chr6 14407712 14407905 -135109132 - B4 SINE B4 -76 216 9 5 694 3846 249 85 13 chr6 14408189 14409180 -135107857 - Lx5 LINE L1 -3 7047 5986 5 694 21 0 0 0 chr6 14409465 14409486 -135107551 + AT_rich Low_complexity Low_complexity 1 21 0 5 694 285 289 0 0 chr6 14409502 14409592 -135107445 - L1MB1 LINE L1 -175 5993 5904 5 694 1972 152 8 14 chr6 14409840 14410207 -135106830 + IAPLTR1_Mm LTR ERVK 1 365 -2 5 694 55140 11 3 10 chr6 14410207 14416721 -135100316 + IAPEz-int LTR ERVK 9 6481 0 5 694 2014 128 41 46 chr6 14416721 14417090 -135099947 + IAPLTR1_Mm LTR ERVK 1 367 0 5 694 238 376 29 22 chr6 14417630 14417766 -135099271 - L2 LINE L2 -456 2963 2827 5 695 22 35 0 0 chr6 14418156 14418185 -135098852 + AT_rich Low_complexity Low_complexity 1 29 0 5 695 245 309 0 56 chr6 14418192 14418264 -135098773 + ID4 SINE ID 3 70 -13 5 695 254 333 43 0 chr6 14418343 14418412 -135098625 + PB1D10 SINE Alu 23 94 -23 5 695 477 0 0 0 chr6 14418431 14418484 -135098553 + (TAA)n Simple_repeat Simple_repeat 2 54 0 5 695 24 0 0 0 chr6 14418537 14418561 -135098476 + AT_rich Low_complexity Low_complexity 1 24 0 5 695 22 70 0 0 chr6 14419433 14419476 -135097561 + AT_rich Low_complexity Low_complexity 1 43 0 5 695 711 311 34 115 chr6 14419585 14419941 -135097096 - MTE2a LTR MaLR -39 340 14 5 695 279 0 0 0 chr6 14421071 14421102 -135095935 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 695 467 17 0 16 chr6 14421173 14421234 -135095803 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 5 695 790 146 122 0 chr6 14421234 14421357 -135095680 - B1_Mus1 SINE Alu -9 139 2 5 695 536 89 40 16 chr6 14421383 14421508 -135095529 + (TA)n Simple_repeat Simple_repeat 1 128 0 5 695 27 29 0 0 chr6 14421762 14421796 -135095241 + AT_rich Low_complexity Low_complexity 1 34 0 5 695 607 99 20 0 chr6 14422934 14423035 -135094002 + (CA)n Simple_repeat Simple_repeat 2 104 0 5 695 3057 110 22 4 chr6 14423188 14423644 -135093393 - Lx3B LINE L1 -5 6968 6505 5 695 1684 54 0 22 chr6 14424406 14424634 -135092403 + L1_Mus1 LINE L1 6345 6567 0 5 695 454 143 29 0 chr6 14424890 14424960 -135092077 + RMER10A LTR ERVL 1 72 -370 5 695 341 212 94 145 chr6 14424951 14425089 -135091948 + RMER10A LTR ERVL 194 324 -118 5 695 369 220 117 75 chr6 14425560 14425696 -135091341 + RMER17D LTR ERVK 293 442 -447 5 695 351 0 0 0 chr6 14425696 14425735 -135091302 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 695 445 92 26 0 chr6 14425737 14425813 -135091224 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 695 369 220 117 75 chr6 14425813 14425938 -135091099 + RMER17D LTR ERVK 443 568 -321 5 695 253 83 0 0 chr6 14426523 14426559 -135090478 - L1VL1 LINE L1 -5885 537 502 5 695 3032 73 73 0 chr6 14426559 14426967 -135090070 + L1_Mus1 LINE L1 6130 6567 0 5 695 2229 165 26 5 chr6 14427473 14427851 -135089186 + ORR1B1 LTR MaLR 1 386 -8 5 695 2820 261 87 170 chr6 14427855 14428030 -135089007 + ORR1B1-int LTR MaLR 1 110 -1853 5 695 321 26 0 0 chr6 14428030 14428068 -135088969 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 695 1097 78 0 0 chr6 14428075 14428217 -135088820 - B1_Mus1 SINE Alu -6 142 1 5 695 3710 225 57 147 chr6 14428217 14430141 -135086896 + ORR1B1-int LTR MaLR 117 1934 -29 5 695 234 259 11 34 chr6 14430291 14430379 -135086658 + CT-rich Low_complexity Low_complexity 2 87 0 5 695 3712 168 46 14 chr6 14430822 14431514 -135085523 - RLTR33 LTR ERVK -29 649 5 5 695 22 56 0 0 chr6 14431741 14431777 -135085260 + AT_rich Low_complexity Low_complexity 1 36 0 5 695 1392 189 36 41 chr6 14431786 14432151 -135084886 - RMER17C LTR ERVK 0 410 48 5 695 392 279 60 70 chr6 14432154 14432339 -135084698 - RLTR41 LTR ERV1 0 446 264 5 695 477 150 12 0 chr6 14432699 14432779 -135084258 - RMER17B LTR ERVK -695 263 183 5 695 1741 158 177 23 chr6 14432782 14433394 -135083643 - RMER17C-int LTR ERVK 0 3238 2533 5 695 789 168 37 6 chr6 14433406 14433568 -135083469 - RMER17C-int LTR ERVK -902 2336 2170 5 695 689 207 181 57 chr6 14433573 14434001 -135083036 - RMER17C-int LTR ERVK -1250 1988 1508 5 695 279 0 0 0 chr6 14435245 14435276 -135081761 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 695 198 355 72 32 chr6 14436281 14436406 -135080631 - MIRb SINE MIR -41 227 98 5 695 181 261 0 92 chr6 14436532 14436608 -135080429 + L2a LINE L2 3355 3423 -3 5 695 2323 121 15 35 chr6 14436613 14437016 -135080021 - RLTR9D LTR ERVK -8 395 1 5 695 1240 217 123 27 chr6 14437098 14437472 -135079565 - RMER17C LTR ERVK 0 410 1 5 695 349 119 0 17 chr6 14437573 14437633 -135079404 - Lx9 LINE L1 -167 7477 7419 5 695 342 163 43 11 chr6 14438008 14438101 -135078936 + Lx9 LINE L1 7542 7637 -7 5 695 352 251 185 5 chr6 14439765 14439949 -135077088 - MER2 DNA MER2_type -128 217 1 5 695 345 282 79 21 chr6 14440144 14440307 -135076730 - MLT1A1 LTR MaLR -172 193 17 5 695 273 57 0 0 chr6 14440359 14440394 -135076643 + (T)n Simple_repeat Simple_repeat 1 35 0 5 695 1069 93 0 0 chr6 14440419 14440558 -135076479 + B1_Mm SINE Alu 1 139 -8 6 695 333 0 0 0 chr6 14440561 14440598 -135076439 + (A)n Simple_repeat Simple_repeat 1 37 0 6 695 256 274 24 57 chr6 14440679 14440803 -135076234 - Lx9 LINE L1 -1166 6478 6359 6 695 510 17 0 0 chr6 14440818 14440877 -135076160 + (GA)n Simple_repeat Simple_repeat 1 59 0 6 695 23 0 0 0 chr6 14440998 14441021 -135076016 + AT_rich Low_complexity Low_complexity 1 23 0 6 695 21 0 0 0 chr6 14441773 14441794 -135075243 + AT_rich Low_complexity Low_complexity 1 21 0 6 695 2206 213 113 23 chr6 14441945 14442474 -135074563 - RLTR20B3 LTR ERVK 0 577 1 6 695 1007 223 50 18 chr6 14443208 14443486 -135073551 + RMER10B LTR ERVL 6 292 -106 6 695 189 107 0 0 chr6 14443486 14443514 -135073523 + (T)n Simple_repeat Simple_repeat 1 28 0 6 695 2901 44 39 3 chr6 14443558 14443922 -135073115 - L1Md_F3 LINE L1 -2 6582 6206 6 695 439 209 12 0 chr6 14443931 14444017 -135073020 + RMER10B LTR ERVL 312 398 0 6 695 587 345 17 37 chr6 14444659 14444957 -135072080 + B4A SINE B4 1 292 0 6 695 1552 187 71 35 chr6 14445645 14446039 -135070998 - RMER17C LTR ERVK 0 410 3 6 695 1099 92 0 0 chr6 14446537 14446679 -135070358 - B1_Mus1 SINE Alu -6 142 1 6 695 26 0 0 0 chr6 14447071 14447097 -135069940 + AT_rich Low_complexity Low_complexity 1 26 0 6 695 448 242 78 8 chr6 14447186 14447315 -135069722 + B1_Mus1 SINE Alu 1 138 -10 6 695 387 336 40 33 chr6 14447410 14447709 -135069328 + L1M2 LINE L1 4654 4954 -1189 6 695 360 0 0 0 chr6 14448413 14448453 -135068584 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 695 689 147 6 0 chr6 14448453 14448609 -135068428 + GA-rich Low_complexity Low_complexity 2 158 0 6 695 21 82 0 0 chr6 14448679 14448728 -135068309 + AT_rich Low_complexity Low_complexity 1 49 0 6 695 752 21 0 11 chr6 14448962 14449057 -135067980 + (GAAA)n Simple_repeat Simple_repeat 2 95 0 6 695 328 368 59 5 chr6 14449337 14449523 -135067514 + MER3 DNA MER1_type 3 198 -11 6 695 3124 234 50 28 chr6 14449638 14449771 -135067266 - RMER1B Other Other -18 1048 919 6 695 2629 100 20 20 chr6 14449771 14450180 -135066857 - RLTR9E LTR ERVK 0 409 1 6 695 3124 239 128 25 chr6 14450180 14450946 -135066091 - RMER1B Other Other -148 918 101 6 695 453 316 50 7 chr6 14450976 14451153 -135065884 + B3A SINE B2 9 194 -4 6 695 356 0 23 0 chr6 14451342 14451386 -135065651 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 6 695 938 110 7 14 chr6 14451386 14451524 -135065513 - B1_Mm SINE Alu -10 137 1 6 695 269 299 126 103 chr6 14451590 14451900 -135065137 - L1MB1 LINE L1 -75 6114 5798 6 695 315 309 83 32 chr6 14452599 14452756 -135064281 - MIR SINE MIR -3 259 95 6 695 435 296 115 90 chr6 14452758 14452992 -135064045 + B4A SINE B4 1 240 -52 6 695 478 311 0 8 chr6 14452988 14453111 -135063926 + RSINE1 SINE B4 9 130 -35 6 695 206 329 60 40 chr6 14453288 14453437 -135063600 - MER5A DNA MER1_type -5 184 33 6 695 182 393 92 0 chr6 14453636 14453799 -135063238 + MIRc SINE MIR 35 212 -56 6 695 1982 322 55 16 chr6 14456266 14457116 -135059921 - Lx8 LINE L1 -248 7225 6343 6 695 508 271 119 45 chr6 14457252 14457453 -135059584 - B3A SINE B2 0 216 1 6 695 324 64 0 0 chr6 14457995 14458042 -135058995 + (CAAAC)n Simple_repeat Simple_repeat 3 49 0 6 695 1823 186 110 11 chr6 14458442 14458807 -135058230 - MTC LTR MaLR -2 419 19 6 695 217 352 42 0 chr6 14458831 14458902 -135058135 - FLAM_A SINE Alu -221 74 1 6 695 28 29 0 0 chr6 14459126 14459161 -135057876 + AT_rich Low_complexity Low_complexity 1 35 0 6 695 302 294 97 26 chr6 14460133 14460482 -135056555 + L1M4 LINE L1 4888 5261 -885 6 695 936 293 93 51 chr6 14460702 14461036 -135056001 + MTE2a LTR MaLR 29 376 -3 6 695 360 0 0 0 chr6 14461091 14461131 -135055906 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 695 779 290 31 15 chr6 14461758 14461954 -135055083 + B3 SINE B2 11 209 -7 6 695 4172 95 37 16 chr6 14462018 14462325 -135054712 - Lx3_Mus LINE L1 0 7009 6698 6 695 3796 160 74 97 chr6 14462325 14463252 -135053785 + RMER17A2 LTR ERVK 1 906 0 6 695 4172 95 37 16 chr6 14463252 14463562 -135053475 - Lx3_Mus LINE L1 -312 6697 6379 6 695 1493 130 0 46 chr6 14463564 14463805 -135053232 + Lx3_Mus LINE L1 6164 6393 -616 6 695 27 0 0 0 chr6 14463806 14463833 -135053204 + AT_rich Low_complexity Low_complexity 1 27 0 6 695 28217 150 98 19 chr6 14463978 14465045 -135051992 + Lx3A LINE L1 207 1414 -4472 6 695 281 26 26 0 chr6 14465045 14465083 -135051954 + (TTA)n Simple_repeat Simple_repeat 2 40 0 6 695 28217 94 63 30 chr6 14465083 14470111 -135046926 + Lx3A LINE L1 1415 6603 -378 6 695 1396 117 0 0 chr6 14470118 14470341 -135046696 - L1_Mur1 LINE L1 -4329 1557 1335 6 695 1802 118 4 7 chr6 14470346 14470619 -135046418 + Lx3A LINE L1 6700 6971 -10 6 695 198 103 0 0 chr6 14470619 14470648 -135046389 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6 695 23 33 0 0 chr6 14471786 14471816 -135045221 + AT_rich Low_complexity Low_complexity 1 30 0 6 695 236 160 40 0 chr6 14473030 14473080 -135043957 + A-rich Low_complexity Low_complexity 1 52 0 6 695 1453 89 47 9 chr6 14473233 14473448 -135043589 + L1Md_F2 LINE L1 6348 6570 -12 6 695 33 25 0 0 chr6 14474124 14474164 -135042873 + AT_rich Low_complexity Low_complexity 1 40 0 6 695 359 250 45 0 chr6 14474429 14474517 -135042520 - PB1D7 SINE Alu -4 116 25 6 695 630 267 48 34 chr6 14474911 14475120 -135041917 + MLT2D LTR ERVL 6 217 -180 6 695 223 279 29 0 chr6 14475231 14475335 -135041702 + (TA)n Simple_repeat Simple_repeat 2 108 0 6 695 788 325 92 40 chr6 14475640 14475986 -135041051 + MTEa LTR MaLR 3 366 -13 6 695 351 150 0 0 chr6 14476003 14476063 -135040974 + (TATG)n Simple_repeat Simple_repeat 2 61 0 6 695 22 56 0 0 chr6 14476122 14476158 -135040879 + AT_rich Low_complexity Low_complexity 1 36 0 6 695 396 0 0 0 chr6 14476196 14476240 -135040797 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 695 24 0 0 0 chr6 14476491 14476515 -135040522 + AT_rich Low_complexity Low_complexity 1 24 0 6 695 858 125 0 0 chr6 14476958 14477102 -135039935 + (TC)n Simple_repeat Simple_repeat 2 145 0 6 695 1054 198 20 0 chr6 14477228 14477425 -135039612 + RMER13B LTR ERVK 1 201 -707 6 695 273 139 0 0 chr6 14477424 14477467 -135039570 - RMER13B LTR ERVK -865 43 1 6 695 25 0 0 0 chr6 14477729 14477754 -135039283 + AT_rich Low_complexity Low_complexity 1 25 0 6 695 252 0 0 0 chr6 14479428 14479456 -135037581 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 6 695 24 0 0 0 chr6 14479859 14479883 -135037154 + AT_rich Low_complexity Low_complexity 1 24 0 6 695 252 331 94 27 chr6 14479895 14480075 -135036962 - MIRb SINE MIR -80 188 1 6 695 308 362 29 0 chr6 14480107 14480212 -135036825 + PB1D10 SINE Alu 2 109 -8 6 695 397 263 70 37 chr6 14480851 14481100 -135035937 + L1MA6 LINE L1 5341 5607 -684 6 695 4499 39 2 18 chr6 14481104 14481853 -135035184 - L1Md_F2 LINE L1 -517 6065 5325 6 695 3349 77 47 2 chr6 14481853 14482322 -135034715 + L1Md_F2 LINE L1 6082 6571 -11 6 695 392 312 54 32 chr6 14482345 14482623 -135034414 + L1MA6 LINE L1 5896 6179 -121 6 695 1092 82 0 0 chr6 14483133 14483279 -135033758 + B1_Mm SINE Alu 2 147 0 6 695 1470 272 44 46 chr6 14483649 14484149 -135032888 - Lx9 LINE L1 -178 7466 6968 6 695 499 245 10 0 chr6 14484153 14484255 -135032782 - Lx9 LINE L1 -982 6662 6560 6 695 338 277 26 43 chr6 14484255 14484372 -135032665 - Lx9 LINE L1 -1189 6455 6341 6 695 348 119 0 0 chr6 14484374 14484433 -135032604 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 695 789 67 0 0 chr6 14484438 14484542 -135032495 + (GA)n Simple_repeat Simple_repeat 1 104 0 6 695 2378 176 35 39 chr6 14485130 14485718 -135031319 - Lx6 LINE L1 -1453 6007 5410 6 695 3836 280 114 9 chr6 14485710 14486995 -135030042 + Lx6 LINE L1 6018 7681 -15 6 695 21 0 0 0 chr6 14487204 14487225 -135029812 + AT_rich Low_complexity Low_complexity 1 21 0 6 695 1889 271 89 34 chr6 14487315 14488101 -135028936 - Lx9 LINE L1 0 7644 6816 6 695 322 267 49 49 chr6 14488234 14488419 -135028618 + L1MC LINE L1 4503 4687 -1459 6 695 294 257 0 0 chr6 14489220 14489294 -135027743 - Lx7 LINE L1 -397 7299 7226 6 695 559 306 147 26 chr6 14489313 14489537 -135027500 - Lx7 LINE L1 -564 7132 6871 6 695 943 222 112 62 chr6 14489537 14489893 -135027144 - ORR1D1 LTR MaLR 0 374 1 6 695 559 306 147 26 chr6 14489893 14489933 -135027104 - Lx7 LINE L1 -826 6870 6836 6 695 238 289 0 0 chr6 14489933 14489985 -135027052 - RSINE1 SINE B4 -111 54 3 6 695 35 0 0 0 chr6 14490829 14490864 -135026173 + AT_rich Low_complexity Low_complexity 1 35 0 6 695 245 29 0 29 chr6 14491119 14491154 -135025883 + (AGGGGG)n Simple_repeat Simple_repeat 5 38 0 6 695 455 344 43 12 chr6 14491905 14492067 -135024970 + ORR1E LTR MaLR 63 229 -130 6 695 508 163 0 0 chr6 14492104 14492202 -135024835 - L1VL4 LINE L1 -2268 1291 1194 6 695 6679 92 78 6 chr6 14492222 14493230 -135023807 - L1_Mus3 LINE L1 -5 6633 5554 6 695 4353 127 35 17 chr6 14493230 14494232 -135022805 - L1VL4 LINE L1 -2365 1194 171 6 695 324 0 0 0 chr6 14494279 14494315 -135022722 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 695 387 0 0 0 chr6 14494346 14494389 -135022648 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 695 423 0 0 0 chr6 14494473 14494520 -135022517 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 695 453 36 0 0 chr6 14494520 14494574 -135022463 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 695 637 312 107 10 chr6 14494596 14494981 -135022056 - L1MA4 LINE L1 -365 5935 5514 6 695 1180 181 122 0 chr6 14494989 14495226 -135021811 - L1_Mus4 LINE L1 -10 6626 6361 6 695 315 311 0 7 chr6 14495240 14495394 -135021643 - L1MA4 LINE L1 -816 5484 5318 6 695 245 313 58 32 chr6 14495429 14495617 -135021420 - L1MA4 LINE L1 -924 5216 5024 6 695 842 297 0 19 chr6 14495786 14495992 -135021045 + B3 SINE B2 15 216 0 6 695 555 254 118 30 chr6 14496086 14496289 -135020748 + Lx8 LINE L1 7249 7469 -4 6 695 20949 39 3 11 chr6 14496465 14500000 -135017037 + L1Md_A LINE L1 233 3734 -2149 6 695 15824 21 1 1 chr6 14500000 14501851 -135015186 + L1Md_T LINE L1 3735 5586 -297 1 695 8191 45 0 0 chr6 14501851 14502847 -135014190 + L1Md_T LINE L1 5587 6582 0 1 695 286 346 19 0 chr6 14503309 14503416 -135013621 + L2a LINE L2 3294 3402 -24 2 695 433 52 0 49 chr6 14503489 14503550 -135013487 - RLTR27 LTR ERVK -45 264 207 3 695 2860 69 42 0 chr6 14503759 14504137 -135012900 - MTA_Mm LTR MaLR -2 394 1 4 695 3326 124 24 29 chr6 14504531 14505085 -135011952 - Lx3_Mus LINE L1 -4 7005 6455 5 695 1936 104 66 0 chr6 14505914 14506203 -135010834 - Lx3_Mus LINE L1 -537 6472 6165 5 695 3646 111 2 2 chr6 14506203 14506734 -135010303 + Lx3_Mus LINE L1 6479 7009 0 5 695 21 0 0 0 chr6 14507428 14507449 -135009588 + AT_rich Low_complexity Low_complexity 1 21 0 6 695 182 354 59 20 chr6 14508185 14508286 -135008751 + MIRb SINE MIR 39 143 -125 7 695 354 194 117 19 chr6 14508654 14508762 -135008275 + PB1D10 SINE Alu 9 130 -19 8 695 6226 46 18 13 chr6 14508993 14509787 -135007250 - L1Md_F2 LINE L1 -12 6570 5773 9 695 268 336 28 51 chr6 14510423 14510639 -135006398 - L1MC4 LINE L1 -43 7999 7789 1 695 3208 48 15 0 chr6 14510658 14511070 -135005967 - L1Md_F2 LINE L1 -1 6581 6164 1 695 296 391 36 44 chr6 14511201 14511426 -135005611 + MIRb SINE MIR 17 239 -29 1 695 1971 332 94 11 chr6 14511438 14512244 -135004793 + MTE-int LTR MaLR 98 970 -610 1 695 5579 94 9 0 chr6 14512254 14513019 -135004018 - L1_Mus4 LINE L1 -261 6375 5604 1 695 1553 136 23 0 chr6 14513025 14513282 -135003755 + L1_Mus4 LINE L1 6372 6634 -2 1 695 22 56 0 0 chr6 14514128 14514164 -135002873 + AT_rich Low_complexity Low_complexity 1 36 0 1 695 34 42 0 0 chr6 14514194 14514242 -135002795 + AT_rich Low_complexity Low_complexity 1 48 0 1 695 1395 229 16 7 chr6 14514879 14515182 -135001855 + Lx6 LINE L1 7151 7456 -4 1 695 1868 267 22 14 chr6 14515554 14516048 -135000989 - Lx7 LINE L1 -1116 6580 6083 1 695 500 158 22 8 chr6 14516483 14516617 -135000420 + (TA)n Simple_repeat Simple_repeat 2 137 0 1 695 3694 248 77 7 chr6 14516701 14517666 -134999371 + Lx9 LINE L1 6334 7365 -279 2 695 405 0 0 0 chr6 14517690 14517735 -134999302 + (CATA)n Simple_repeat Simple_repeat 2 46 0 2 695 569 40 13 0 chr6 14517772 14517848 -134999189 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 695 1979 108 30 7 chr6 14517848 14518146 -134998891 + RLTR27 LTR ERVK 5 309 0 2 695 336 125 38 57 chr6 14518171 14518224 -134998813 + RLTR10-int LTR ERVK 163 267 -7314 2 695 706 216 46 51 chr6 14518256 14518451 -134998586 + RLTR10-int LTR ERVK 655 848 -1139 2 695 208 286 0 54 chr6 14518451 14518525 -134998512 + A-rich Low_complexity Low_complexity 5 74 0 2 695 204 125 0 0 chr6 14518712 14518744 -134998293 + (A)n Simple_repeat Simple_repeat 1 32 0 2 695 3214 298 39 42 chr6 14518819 14520650 -134996387 + MMERVK10C-int LTR ERVK 3652 5477 -2104 2 695 1337 233 37 40 chr6 14521129 14521714 -134995323 + MMERVK10C-int LTR ERVK 6907 7581 0 2 695 1802 116 22 7 chr6 14521722 14521999 -134995038 + RLTR27 LTR ERVK 29 309 0 2 695 310 280 40 0 chr6 14524481 14524581 -134992456 - MER67C LTR ERV1 -14 697 594 2 695 334 275 86 29 chr6 14524633 14524738 -134992299 - MER67C LTR ERV1 -195 516 406 2 695 1036 258 79 9 chr6 14524756 14525085 -134991952 - MER67C LTR ERV1 -356 355 4 2 695 220 258 15 15 chr6 14525198 14525218 -134991819 + polypurine Low_complexity Low_complexity 4 23 0 2 695 207 88 0 0 chr6 14525218 14525252 -134991785 + (CAGAGA)n Simple_repeat Simple_repeat 2 35 0 3 695 220 258 15 15 chr6 14525252 14525298 -134991739 + polypurine Low_complexity Low_complexity 24 70 0 3 695 221 0 35 0 chr6 14526026 14526055 -134990982 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 695 1062 80 0 0 chr6 14526055 14526193 -134990844 - B1_Mus1 SINE Alu -9 139 2 3 695 414 0 0 0 chr6 14526598 14526644 -134990393 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 695 238 352 44 44 chr6 14526717 14526922 -134990115 - Lx8 LINE L1 -199 7274 7070 3 695 1593 311 46 14 chr6 14526922 14527492 -134989545 + Lx8 LINE L1 6367 6954 -519 3 695 1088 83 7 0 chr6 14527713 14527858 -134989179 + B1_Mus2 SINE Alu 2 147 0 3 695 425 312 27 77 chr6 14528400 14528705 -134988332 - L1M3 LINE L1 -1219 4924 4634 3 695 480 287 60 42 chr6 14528936 14529103 -134987934 + Lx5 LINE L1 6878 7047 -3 3 695 23 0 0 0 chr6 14529103 14529126 -134987911 + AT_rich Low_complexity Low_complexity 1 23 0 3 695 676 283 63 58 chr6 14529158 14529605 -134987432 - L1M3 LINE L1 -1525 4615 4167 3 695 1871 158 76 6 chr6 14529783 14530126 -134986911 + ORR1B2 LTR MaLR 1 367 0 4 695 507 254 29 60 chr6 14530892 14531077 -134985960 - B3A SINE B2 0 193 2 4 695 401 15 61 0 chr6 14532481 14532547 -134984490 + (CAAAAA)n Simple_repeat Simple_repeat 2 71 0 4 695 23 0 0 0 chr6 14532729 14532752 -134984285 + AT_rich Low_complexity Low_complexity 1 23 0 4 695 201 182 0 0 chr6 14534884 14534917 -134982120 + MIRm SINE MIR 240 272 -4 4 695 40 67 0 0 chr6 14536167 14536242 -134980795 + AT_rich Low_complexity Low_complexity 1 75 0 4 695 3135 53 0 10 chr6 14537048 14537448 -134979589 - MTA_Mm LTR MaLR 0 396 1 4 695 2725 181 33 11 chr6 14538041 14538611 -134978426 + Lx7 LINE L1 4582 5164 -716 4 695 402 57 0 0 chr6 14538612 14538665 -134978372 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 695 21 0 0 0 chr6 14538665 14538686 -134978351 + AT_rich Low_complexity Low_complexity 1 21 0 4 695 2860 83 10 0 chr6 14538686 14539093 -134977944 - BGLII LTR ERVK -2 419 9 5 695 1123 78 78 0 chr6 14539109 14539276 -134977761 - L1_Mus4 LINE L1 -4 6632 6453 5 695 2973 132 71 16 chr6 14539292 14539800 -134977237 + Lx3C LINE L1 6432 6967 -9 5 695 2374 206 123 13 chr6 14539827 14540711 -134976326 + Lx7 LINE L1 5290 6272 -1424 4 695 1509 216 127 0 chr6 14540734 14541095 -134975942 + Lx7 LINE L1 6680 7086 -610 4 695 21 57 0 0 chr6 14541223 14541258 -134975779 + AT_rich Low_complexity Low_complexity 1 35 0 5 695 382 225 40 70 chr6 14541343 14541537 -134975500 + L1MC LINE L1 3004 3189 -2957 5 695 1783 196 146 77 chr6 14541712 14542358 -134974679 + RMER6C LTR ERVK 1 690 0 5 695 252 0 0 0 chr6 14542642 14542670 -134974367 + (CAT)n Simple_repeat Simple_repeat 2 29 0 5 695 315 290 30 0 chr6 14544558 14544658 -134972379 - L1MA4A LINE L1 -416 5887 5785 5 695 186 43 0 0 chr6 14544659 14544682 -134972355 + (TTATA)n Simple_repeat Simple_repeat 5 27 0 5 695 2355 183 11 9 chr6 14545339 14545780 -134971257 + Lx3C LINE L1 6187 6628 -348 5 695 697 232 2 114 chr6 14545783 14545980 -134971057 - ORR1C2 LTR MaLR -201 173 1 6 695 300 173 0 37 chr6 14546200 14546254 -134970783 - HAL1-3A_ME LINE L1 -831 2027 1976 6 695 366 311 115 73 chr6 14546648 14546936 -134970101 - LTR78 LTR ERV1 -64 1240 941 6 695 495 0 0 0 chr6 14546937 14546992 -134970045 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 695 309 328 106 48 chr6 14547260 14547468 -134969569 - Charlie16a DNA MER1_type 0 342 123 6 695 224 21 60 40 chr6 14547769 14547819 -134969218 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 6 696 569 323 45 17 chr6 14549064 14549320 -134967717 - LTR16B1 LTR ERVL -63 399 134 6 696 273 89 0 0 chr6 14549500 14549545 -134967492 + (T)n Simple_repeat Simple_repeat 1 45 0 6 696 210 71 0 0 chr6 14549920 14549948 -134967089 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 696 442 250 27 0 chr6 14551469 14551581 -134965456 - B1F SINE Alu -25 124 10 6 696 387 0 0 0 chr6 14551650 14551693 -134965344 + (TC)n Simple_repeat Simple_repeat 1 43 0 7 696 2882 136 24 0 chr6 14551693 14552148 -134964889 - Lx LINE L1 -17 6637 6172 7 696 180 77 0 0 chr6 14552225 14552251 -134964786 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 696 31 68 0 0 chr6 14552307 14552366 -134964671 + AT_rich Low_complexity Low_complexity 1 59 0 7 696 319 341 22 0 chr6 14553326 14553417 -134963620 + B3 SINE B2 1 93 -123 7 696 191 103 26 0 chr6 14553491 14553530 -134963507 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 696 14215 61 3 1 chr6 14553543 14556072 -134960965 - L1Md_F2 LINE L1 0 6582 4048 7 696 832 148 105 0 chr6 14556707 14556869 -134960168 - URR1B DNA MER1_type 0 225 47 7 696 188 67 0 32 chr6 14556888 14556919 -134960118 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 696 976 113 7 13 chr6 14557145 14557298 -134959739 - Lx2 LINE L1 -281 6716 6565 7 696 1337 152 157 11 chr6 14557287 14557462 -134959575 + Lx2 LINE L1 6692 6883 -114 7 696 189 0 0 0 chr6 14557462 14557483 -134959554 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 8 696 1337 152 157 11 chr6 14557483 14557574 -134959463 + Lx2 LINE L1 6884 6997 0 7 696 274 376 26 13 chr6 14558395 14558546 -134958491 + LTR40a LTR ERVL 156 308 -211 8 696 207 88 0 0 chr6 14558979 14559013 -134958024 + (A)n Simple_repeat Simple_repeat 1 34 0 8 696 381 22 0 0 chr6 14559310 14559356 -134957681 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 696 26 0 0 0 chr6 14560710 14560736 -134956301 + AT_rich Low_complexity Low_complexity 1 26 0 8 696 226 254 13 66 chr6 14561220 14561296 -134955741 - L2a LINE L2 0 3426 3355 8 696 31 76 0 0 chr6 14561354 14561420 -134955617 + AT_rich Low_complexity Low_complexity 1 66 0 8 696 332 288 11 245 chr6 14561577 14561761 -134955276 + RSINE1 SINE B4 6 146 -19 8 696 228 310 0 66 chr6 14561846 14561922 -134955115 + Cheshire DNA MER1_type 32 102 -2318 8 696 963 136 38 3 chr6 14561976 14562599 -134954438 + (TAGA)n Simple_repeat Simple_repeat 1 644 0 8 696 504 293 6 37 chr6 14562613 14562776 -134954261 - MLT1B LTR MaLR -55 335 178 9 696 264 280 96 89 chr6 14563423 14563580 -134953457 + B4A SINE B4 117 274 -18 9 696 877 162 0 0 chr6 14563668 14563804 -134953233 - B1_Mus1 SINE Alu -3 145 10 9 696 442 182 30 10 chr6 14563803 14563903 -134953134 + B1_Mus2 SINE Alu 46 147 0 9 696 198 71 0 0 chr6 14565091 14565119 -134951918 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 9 696 1654 262 101 7 chr6 14565121 14565585 -134951452 - Lx5 LINE L1 -16 7034 6527 9 696 555 62 0 0 chr6 14566186 14566266 -134950771 + (GTTTG)n Simple_repeat Simple_repeat 1 80 0 9 696 258 297 53 18 chr6 14566268 14566381 -134950656 - B1_Mus1 SINE Alu -21 127 11 9 696 483 234 8 15 chr6 14567917 14568047 -134948990 + Lx9 LINE L1 7357 7485 -159 9 696 504 68 0 0 chr6 14568047 14568120 -134948917 + (GA)n Simple_repeat Simple_repeat 1 73 0 9 696 270 0 0 0 chr6 14568418 14568448 -134948589 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 696 378 0 0 0 chr6 14568645 14568687 -134948350 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 696 3211 74 2 20 chr6 14569560 14570014 -134947023 + L1Md_F2 LINE L1 6137 6582 0 1 696 340 190 50 12 chr6 14570057 14570137 -134946900 + Lx3B LINE L1 6886 6968 -5 1 696 29 84 0 0 chr6 14570147 14570218 -134946819 + AT_rich Low_complexity Low_complexity 1 71 0 1 696 489 351 94 8 chr6 14570249 14570493 -134946544 - MLT1B LTR MaLR -115 275 11 1 696 390 349 107 21 chr6 14570541 14570822 -134946215 + MamRep605 Unknown Unknown 318 622 -254 1 696 779 294 61 50 chr6 14570879 14571140 -134945897 - B4 SINE B4 -27 265 2 1 696 992 185 5 0 chr6 14571540 14571735 -134945302 - Lx LINE L1 -6 6648 6453 1 696 5364 85 0 6 chr6 14573046 14573769 -134943268 - L1Md_F2 LINE L1 -13 6569 5851 1 696 6257 138 10 7 chr6 14573769 14574750 -134942287 - Lx LINE L1 -45 6609 5626 1 696 238 325 13 0 chr6 14575975 14576052 -134940985 - ID4 SINE ID -3 80 3 1 696 314 303 130 8 chr6 14576847 14576970 -134940067 + B1_Mur1 SINE Alu 1 138 -11 1 696 492 32 0 0 chr6 14576970 14577032 -134940005 + (CAAAA)n Simple_repeat Simple_repeat 2 63 0 1 696 3545 59 0 15 chr6 14577139 14577603 -134939434 + L1Md_F2 LINE L1 5130 5586 -297 1 696 7530 64 14 8 chr6 14577604 14578582 -134938455 + L1Md_F2 LINE L1 5588 6571 -11 1 696 27 0 0 0 chr6 14578762 14578789 -134938248 + AT_rich Low_complexity Low_complexity 1 27 0 1 696 874 159 4 19 chr6 14579338 14579601 -134937436 + GA-rich Low_complexity Low_complexity 1 258 0 1 696 558 0 0 0 chr6 14579649 14579711 -134937326 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 696 405 0 0 0 chr6 14579711 14579755 -134937282 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 696 258 32 0 0 chr6 14580019 14580050 -134936987 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 696 182 171 0 24 chr6 14580705 14580747 -134936290 + (TATG)n Simple_repeat Simple_repeat 4 44 0 1 696 22 0 0 0 chr6 14581138 14581160 -134935877 + AT_rich Low_complexity Low_complexity 1 22 0 1 696 4347 158 101 19 chr6 14583646 14584476 -134932561 - RMER13B LTR ERVK 0 908 11 1 696 369 342 17 0 chr6 14585381 14585508 -134931529 - MER67C LTR ERV1 -256 405 173 1 696 525 17 0 0 chr6 14585667 14585727 -134931310 - L1Md_T LINE L1 -18 5865 5806 1 696 5869 46 0 0 chr6 14585727 14586446 -134930591 + L1Md_T LINE L1 5864 6582 0 1 696 782 207 6 0 chr6 14586701 14586880 -134930157 + GA-rich Low_complexity Low_complexity 1 180 0 1 696 1590 244 78 9 chr6 14587012 14587434 -134929603 + Lx7 LINE L1 6869 7319 -377 1 696 423 0 0 0 chr6 14587436 14587483 -134929554 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 696 1122 220 5 7 chr6 14587584 14587825 -134929212 - RLTR20D LTR ERVK 0 568 274 1 696 522 0 0 0 chr6 14587825 14587883 -134929154 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 696 711 0 0 0 chr6 14588265 14588344 -134928693 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 696 319 116 58 0 chr6 14588344 14588413 -134928624 + B2_Mm2 SINE B2 122 194 -1 1 696 288 369 13 6 chr6 14589152 14589310 -134927727 - L2a LINE L2 -4 3422 3264 1 696 1266 57 0 0 chr6 14589926 14590102 -134926935 + (TC)n Simple_repeat Simple_repeat 2 177 0 1 696 741 303 34 0 chr6 14590360 14590568 -134926469 - B3 SINE B2 0 216 2 1 696 2085 290 57 102 chr6 14590622 14590788 -134926249 + RMER1A Other Other 45 223 -807 1 696 1128 89 0 0 chr6 14590788 14590968 -134926069 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 696 2360 239 65 28 chr6 14590968 14591598 -134925439 + RMER1B Other Other 224 867 -199 1 696 919 126 76 60 chr6 14591598 14591783 -134925254 + B2_Mm2 SINE B2 3 190 -5 1 696 333 0 0 0 chr6 14591820 14591857 -134925180 + (TTTTA)n Simple_repeat Simple_repeat 5 41 0 1 696 453 341 39 50 chr6 14592281 14592463 -134924574 - B4A SINE B4 -28 264 85 1 696 23 0 0 0 chr6 14593048 14593071 -134923966 + AT_rich Low_complexity Low_complexity 1 23 0 1 696 418 357 16 0 chr6 14593177 14593306 -134923731 + RSINE1 SINE B4 25 155 -10 1 696 1195 56 0 0 chr6 14593336 14593479 -134923558 - B1_Mus2 SINE Alu -4 143 1 1 696 709 284 46 35 chr6 14593499 14593784 -134923253 - RLTR15 LTR ERVK -71 288 1 1 696 308 239 45 18 chr6 14593784 14593895 -134923142 - MYSERV6-int LTR ERVK 0 6550 6437 1 696 587 33 44 0 chr6 14593998 14594088 -134922949 + (GA)n Simple_repeat Simple_repeat 2 95 0 1 696 4165 203 50 28 chr6 14594217 14594314 -134922723 - MYSERV6-int LTR ERVK -84 8875 8788 1 696 3022 99 0 31 chr6 14594314 14594763 -134922274 - L1Md_F2 LINE L1 -12 6570 6136 1 696 4165 203 50 28 chr6 14594763 14595595 -134921442 - MYSERV6-int LTR ERVK -172 8787 7924 1 696 2181 107 3 69 chr6 14595595 14595945 -134921092 - ORR1A2 LTR MaLR 0 327 1 1 696 4165 203 50 28 chr6 14595945 14596054 -134920983 - MYSERV6-int LTR ERVK -1036 7923 7813 1 696 312 89 36 0 chr6 14596058 14596114 -134920923 - MYSERV6-int LTR ERVK -1046 7913 7856 1 696 400 317 39 54 chr6 14596162 14596373 -134920664 - RMER4A LTR ERVK -16 569 257 1 696 3419 238 54 71 chr6 14596375 14597616 -134919421 - MYSERV6-int LTR ERVK -1427 5123 4164 1 696 1139 70 0 0 chr6 14597616 14597759 -134919278 - B1_Mm SINE Alu 0 147 5 1 696 3419 204 39 80 chr6 14597759 14598295 -134918742 - MYSERV6-int LTR ERVK -4796 4163 3619 1 696 24 0 0 0 chr6 14598295 14598319 -134918718 + AT_rich Low_complexity Low_complexity 1 24 0 1 696 41158 6 0 0 chr6 14598319 14604883 -134912154 - L1Md_A LINE L1 -1 6581 18 1 696 8045 220 24 35 chr6 14604884 14606890 -134910147 - MYSERV6-int LTR ERVK -5330 3629 1645 1 696 33765 89 8 11 chr6 14606915 14613239 -134903798 - L1Md_F2 LINE L1 0 6582 277 1 696 1783 128 4 4 chr6 14613239 14613505 -134903532 - L1VL1 LINE L1 -6156 266 1 1 696 1188 312 60 67 chr6 14613636 14614405 -134902632 - MYSERV6-int LTR ERVK -1585 1592 646 1 696 2640 111 27 12 chr6 14614405 14614806 -134902231 + MTB_Mm LTR MaLR 1 407 0 1 696 1188 322 41 28 chr6 14614806 14614922 -134902115 - MYSERV6-int LTR ERVK -8314 645 529 1 696 4322 191 14 24 chr6 14614970 14615907 -134901130 - Lx2A1 LINE L1 -5 7003 6076 1 696 3366 144 20 72 chr6 14615907 14616792 -134900245 + MurERV4_19-int LTR ERVK 4787 5776 -4 1 696 2215 239 22 127 chr6 14616796 14617330 -134899707 + RMER19C LTR ERVK 2 468 -143 1 696 4169 98 58 5 chr6 14617330 14617529 -134899508 - L1_Mus3 LINE L1 0 6638 6419 1 696 576 0 0 0 chr6 14617529 14617593 -134899444 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 696 4169 98 58 5 chr6 14617593 14618017 -134899020 - L1_Mus3 LINE L1 -220 6418 5983 1 696 2215 239 22 127 chr6 14618017 14618161 -134898876 + RMER19C LTR ERVK 469 609 -2 1 696 15271 106 8 3 chr6 14618216 14621091 -134895946 - L1_Mus2 LINE L1 -3 6563 3674 1 696 1678 230 170 28 chr6 14621092 14621248 -134895789 + L1Md_F LINE L1 31 235 -6284 1 696 6448 54 7 22 chr6 14621248 14622082 -134894955 + RLTR13B2 LTR ERVK 1 822 0 1 696 1678 230 170 28 chr6 14622082 14622507 -134894530 + L1Md_F LINE L1 236 695 -5824 1 696 5933 99 0 1 chr6 14622506 14623349 -134893688 + L1_Mus1 LINE L1 3779 4620 -1263 1 696 2480 112 6 22 chr6 14623351 14623716 -134893321 - RLTR10D LTR ERVK 0 359 1 1 696 49827 70 13 15 chr6 14623716 14629144 -134887893 - IAP-d-int LTR ERVK 0 6542 1179 1 696 3070 36 0 3 chr6 14629144 14629502 -134887535 - IAPEY2_LTR LTR ERVK 0 357 1 1 696 49827 70 13 15 chr6 14629502 14630630 -134886407 - IAP-d-int LTR ERVK -5364 1178 1 1 696 2635 92 3 19 chr6 14630630 14630995 -134886042 - RLTR10D LTR ERVK 0 359 1 1 696 8243 92 2 4 chr6 14631001 14632948 -134884089 + L1_Mus1 LINE L1 4623 6564 -3 1 696 15152 92 48 5 chr6 14632969 14636145 -134880892 - L1VL1 LINE L1 -2196 3687 374 1 696 317 309 111 23 chr6 14636662 14636834 -134880203 - MIR SINE MIR -74 188 2 1 696 32 26 0 0 chr6 14637195 14637234 -134879803 + AT_rich Low_complexity Low_complexity 1 39 0 1 696 22 35 0 0 chr6 14638542 14638571 -134878466 + AT_rich Low_complexity Low_complexity 1 29 0 1 696 303 325 117 49 chr6 14639118 14639442 -134877595 - L2a LINE L2 -131 3295 2950 1 696 707 245 14 23 chr6 14639554 14639740 -134877297 - B3 SINE B2 -9 186 6 1 696 725 321 93 82 chr6 14639883 14640660 -134876377 - L1MA6 LINE L1 -139 6161 5377 1 696 304 316 8 33 chr6 14640804 14640925 -134876112 - Lx8 LINE L1 -107 7366 7249 1 696 327 104 0 0 chr6 14640931 14640979 -134876058 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 696 1011 161 0 0 chr6 14641012 14641192 -134875845 + GA-rich Low_complexity Low_complexity 1 180 0 1 696 602 305 6 6 chr6 14641193 14641358 -134875679 - Lx8 LINE L1 -246 7227 7063 1 696 793 83 15 0 chr6 14641576 14641708 -134875329 + (TC)n Simple_repeat Simple_repeat 1 134 0 1 696 438 262 42 42 chr6 14641716 14641883 -134875154 + Lx7 LINE L1 6706 6872 -824 1 696 201 352 11 0 chr6 14642011 14642099 -134874938 + GA-rich Low_complexity Low_complexity 3 91 0 1 696 789 203 45 0 chr6 14642142 14642319 -134874718 - Lx2A1 LINE L1 -6 7002 6818 1 696 533 330 75 62 chr6 14644689 14645109 -134871928 - MLT1C LTR MaLR 0 467 2 1 696 241 371 0 28 chr6 14646195 14646267 -134870770 + B1F2 SINE Alu 2 71 -78 1 696 1105 107 6 0 chr6 14646474 14646642 -134870395 - L1_Mus2 LINE L1 0 6566 6398 1 696 1124 36 0 28 chr6 14646642 14646785 -134870252 - L1_Mus2 LINE L1 -833 5733 5595 1 696 739 171 6 6 chr6 14647127 14647286 -134869751 + GA-rich Low_complexity Low_complexity 2 160 0 1 696 264 295 88 18 chr6 14647301 14647415 -134869622 + MLT1A LTR MaLR 253 374 0 1 696 218 347 116 25 chr6 14647440 14647638 -134869399 + L2a LINE L2 3202 3417 -9 1 696 21 0 0 0 chr6 14647949 14647970 -134869067 + AT_rich Low_complexity Low_complexity 1 21 0 1 696 509 331 0 7 chr6 14647993 14648139 -134868898 - B1_Mur1 SINE Alu -1 148 4 1 696 33 25 0 0 chr6 14649795 14649835 -134867202 + AT_rich Low_complexity Low_complexity 1 40 0 1 696 722 179 52 0 chr6 14652378 14652512 -134864525 - B1_Mus1 SINE Alu -7 141 1 1 696 318 225 32 54 chr6 14653620 14653737 -134863300 - PB1D10 SINE Alu -25 124 12 1 696 29 28 0 0 chr6 14653789 14653825 -134863212 + AT_rich Low_complexity Low_complexity 1 36 0 1 696 2209 123 26 11 chr6 14653885 14654245 -134862792 + Lx3A LINE L1 6599 6966 -15 1 696 1272 79 0 0 chr6 14654245 14654423 -134862614 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1 696 2209 123 26 11 chr6 14654423 14654439 -134862598 + Lx3A LINE L1 6967 6981 0 1 696 850 157 6 17 chr6 14654439 14654565 -134862472 + polypurine Low_complexity Low_complexity 1 127 0 1 696 1297 51 11 0 chr6 14654565 14654743 -134862294 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 696 850 157 6 17 chr6 14654743 14654761 -134862276 + polypurine Low_complexity Low_complexity 128 143 0 1 696 1247 69 6 0 chr6 14654761 14654936 -134862101 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1 696 850 157 6 17 chr6 14654936 14654971 -134862066 + polypurine Low_complexity Low_complexity 144 178 0 1 696 257 264 0 0 chr6 14654989 14655041 -134861996 + A-rich Low_complexity Low_complexity 1 52 0 1 696 336 24 0 0 chr6 14655041 14655082 -134861955 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 696 257 264 0 0 chr6 14655082 14655116 -134861921 + A-rich Low_complexity Low_complexity 53 86 0 2 696 219 114 0 0 chr6 14655436 14655471 -134861566 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 696 221 0 35 0 chr6 14655500 14655529 -134861508 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 2 696 1166 55 0 7 chr6 14655530 14655677 -134861360 - B1_Mus2 SINE Alu 0 147 2 2 696 284 0 28 0 chr6 14655852 14655888 -134861149 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 696 246 299 33 33 chr6 14656578 14656668 -134860369 - HAL1 LINE L1 -2022 485 396 2 696 22 70 0 0 chr6 14657468 14657511 -134859526 + AT_rich Low_complexity Low_complexity 1 43 0 2 696 870 213 70 10 chr6 14657523 14657722 -134859315 + B3 SINE B2 3 213 -3 2 696 192 40 0 0 chr6 14657899 14657924 -134859113 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 696 828 0 0 0 chr6 14658063 14658155 -134858882 + (TTC)n Simple_repeat Simple_repeat 2 93 0 2 696 1263 304 62 48 chr6 14658312 14658793 -134858244 + RMER1C Other Other 513 1001 -341 2 696 351 0 0 0 chr6 14658793 14658832 -134858205 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2 696 1263 304 62 48 chr6 14658832 14658869 -134858168 + RMER1C Other Other 1002 1038 -304 2 696 2291 107 57 16 chr6 14658878 14659250 -134857787 - L1_Mus4 LINE L1 -12 6624 6238 2 696 8876 163 51 1 chr6 14659250 14660859 -134856178 + L1_Mur2 LINE L1 4098 5787 -90 2 696 1468 85 102 45 chr6 14661029 14661275 -134855762 + L1_Mus4 LINE L1 5783 6042 -594 2 696 665 253 6 0 chr6 14661272 14661438 -134855599 + RMER1C Other Other 1028 1194 -148 2 696 282 106 0 0 chr6 14661438 14661485 -134855552 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 696 540 65 0 0 chr6 14661485 14661562 -134855475 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 696 305 284 9 18 chr6 14661562 14661673 -134855364 + RMER1C Other Other 1226 1335 -7 2 696 2690 55 0 50 chr6 14662939 14663302 -134853735 - L1Md_F2 LINE L1 -199 6383 6039 2 696 1849 61 0 12 chr6 14663302 14663549 -134853488 + L1Md_F2 LINE L1 6339 6582 0 2 696 37 69 0 0 chr6 14664047 14664119 -134852918 + AT_rich Low_complexity Low_complexity 1 72 0 2 696 928 147 216 5 chr6 14666658 14666843 -134850194 - URR1A DNA MER1_type 0 226 3 2 696 442 314 13 25 chr6 14672972 14673129 -134843908 - RSINE1 SINE B4 0 165 11 2 696 496 189 20 59 chr6 14673171 14673272 -134843765 - PB1D9 SINE Alu -16 104 8 2 696 423 0 0 0 chr6 14673523 14673570 -134843467 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 696 564 286 48 0 chr6 14673801 14673969 -134843068 - Lx8 LINE L1 -442 7031 6856 2 696 466 384 8 32 chr6 14674078 14674331 -134842706 + Lx8 LINE L1 7046 7292 -181 2 696 378 0 0 0 chr6 14674394 14674436 -134842601 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 696 1073 172 5 0 chr6 14674447 14674639 -134842398 + Lx4A LINE L1 6861 7053 -5 2 696 24 0 0 0 chr6 14675704 14675728 -134841309 + AT_rich Low_complexity Low_complexity 1 24 0 2 696 435 349 65 2 chr6 14675738 14675926 -134841111 - B3 SINE B2 0 198 2 2 696 808 262 24 19 chr6 14675978 14676184 -134840853 + B3 SINE B2 5 211 -5 2 696 30 59 0 0 chr6 14676185 14676236 -134840801 + AT_rich Low_complexity Low_complexity 1 51 0 2 696 234 0 0 0 chr6 14676386 14676412 -134840625 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 696 3058 178 8 83 chr6 14676658 14677319 -134839718 + Lx4B LINE L1 6448 7058 0 2 696 192 315 65 33 chr6 14677464 14677556 -134839481 + L2a LINE L2 3329 3423 -3 2 696 309 51 0 0 chr6 14678304 14678343 -134838694 + (TTG)n Simple_repeat Simple_repeat 2 40 0 2 696 251 123 0 34 chr6 14678520 14678579 -134838458 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 2 696 569 63 0 104 chr6 14679573 14679606 -134837431 - L1_Mus2 LINE L1 0 6566 6541 2 10 2691 92 34 101 chr6 14679606 14680111 -134836926 - IAPLTR2_Mm LTR ERVK 0 475 5 2 697 569 63 0 104 chr6 14680111 14680183 -134836854 - L1_Mus2 LINE L1 -26 6540 6472 2 697 320 313 20 29 chr6 14680354 14680456 -134836581 - PB1D7 SINE Alu 0 120 20 2 697 180 125 0 0 chr6 14680512 14680544 -134836493 + (CTG)n Simple_repeat Simple_repeat 1 32 0 2 697 285 51 0 0 chr6 14680683 14680722 -134836315 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 2 697 246 178 125 29 chr6 14680723 14680827 -134836210 + Lx8 LINE L1 7359 7472 -1 2 697 910 287 69 27 chr6 14682579 14682795 -134834242 + B4A SINE B4 1 233 -59 2 697 3308 43 2 0 chr6 14682795 14683190 -134833847 - MTA_Mm LTR MaLR 0 396 1 2 697 910 287 69 27 chr6 14683190 14683234 -134833803 + B4A SINE B4 234 271 -21 2 697 747 260 32 91 chr6 14683236 14683275 -134833762 - MT2A LTR ERVL -32 569 532 2 697 387 0 0 0 chr6 14683275 14683318 -134833719 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 697 782 298 81 90 chr6 14683318 14683764 -134833273 - MT2A LTR ERVL -82 451 10 2 697 340 262 0 23 chr6 14684104 14684190 -134832847 + B4A SINE B4 200 283 -9 2 697 249 139 64 18 chr6 14684195 14684305 -134832732 + CT-rich Low_complexity Low_complexity 2 116 0 2 697 394 230 242 47 chr6 14684314 14684442 -134832595 - B3 SINE B2 -63 153 1 2 697 24 53 0 0 chr6 14684481 14684519 -134832518 + AT_rich Low_complexity Low_complexity 1 38 0 2 697 25 0 0 0 chr6 14684591 14684616 -134832421 + AT_rich Low_complexity Low_complexity 1 25 0 2 697 3320 126 39 13 chr6 14684619 14685158 -134831879 - L1_Mus3 LINE L1 -4 6634 6082 2 697 2716 112 20 16 chr6 14685160 14685620 -134831417 + Lx2 LINE L1 5333 5798 -1199 2 697 184 265 41 0 chr6 14687947 14687996 -134829041 + L2c LINE L2 2522 2572 -847 2 697 418 358 98 30 chr6 14688221 14688486 -134828551 + B4A SINE B4 2 284 -8 2 697 387 41 0 0 chr6 14688544 14688593 -134828444 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 697 200 82 80 20 chr6 14689249 14689299 -134827738 + A-rich Low_complexity Low_complexity 4 56 0 2 697 188 289 95 82 chr6 14691121 14691268 -134825769 + L2c LINE L2 3170 3318 -69 2 697 217 350 185 5 chr6 14691156 14691340 -134825697 + MIRm SINE MIR 60 276 0 2 697 22 35 0 0 chr6 14692317 14692346 -134824691 + AT_rich Low_complexity Low_complexity 1 29 0 2 697 258 81 0 0 chr6 14692905 14692942 -134824095 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 697 1806 246 44 33 chr6 14694662 14695183 -134821854 - RLTR20A2 LTR ERVK -51 527 1 2 697 24 67 0 0 chr6 14695495 14695540 -134821497 + AT_rich Low_complexity Low_complexity 1 45 0 2 697 21 0 0 0 chr6 14695728 14695749 -134821288 + AT_rich Low_complexity Low_complexity 1 21 0 2 697 450 0 0 0 chr6 14695813 14695863 -134821174 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 697 205 356 96 0 chr6 14696163 14696278 -134820759 - MIRb SINE MIR -81 187 62 2 697 774 166 0 0 chr6 14696505 14696656 -134820381 + (TG)n Simple_repeat Simple_repeat 1 151 0 2 697 25 0 0 0 chr6 14697658 14697683 -134819354 + AT_rich Low_complexity Low_complexity 1 25 0 2 697 189 0 0 0 chr6 14698059 14698080 -134818957 + (A)n Simple_repeat Simple_repeat 1 21 0 2 697 1042 71 0 7 chr6 14698154 14698295 -134818742 + B1_Mus1 SINE Alu 8 147 -1 2 697 353 132 0 32 chr6 14698296 14698390 -134818647 + A-rich Low_complexity Low_complexity 1 91 0 2 697 248 111 0 0 chr6 14698397 14698433 -134818604 + U6 snRNA snRNA 1 36 -71 2 697 4635 112 4 4 chr6 14698580 14699274 -134817763 + L1Md_A LINE L1 4892 5585 -298 2 697 7712 50 15 32 chr6 14699275 14700289 -134816748 + L1Md_A LINE L1 5587 6582 0 2 697 3908 59 166 0 chr6 14700292 14700823 -134816214 + L1_Mus1 LINE L1 5947 6565 -2 2 697 440 289 39 26 chr6 14700880 14701033 -134816004 + RSINE1 SINE B4 2 156 -9 2 697 350 42 21 0 chr6 14702728 14702776 -134814261 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 697 279 0 0 0 chr6 14702780 14702811 -134814226 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 697 2320 36 0 0 chr6 14706909 14707186 -134809851 - L1Md_F2 LINE L1 -15 6567 6291 2 697 184 350 179 0 chr6 14708336 14708453 -134808584 - MIR3 SINE MIR -62 146 9 2 697 24 32 0 0 chr6 14709514 14709545 -134807492 + AT_rich Low_complexity Low_complexity 1 31 0 2 697 592 232 84 0 chr6 14710091 14710246 -134806791 + Lx6 LINE L1 6655 6822 -638 2 697 842 248 9 156 chr6 14710242 14710300 -134806737 + Lx6 LINE L1 6951 7007 -453 2 697 354 23 0 0 chr6 14710300 14710343 -134806694 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 697 842 248 9 156 chr6 14710343 14710618 -134806419 + Lx6 LINE L1 7008 7235 -225 2 697 7274 74 20 1 chr6 14710636 14712193 -134804844 - L1Md_F2 LINE L1 -17 6565 4978 2 697 638 207 30 6 chr6 14712200 14712365 -134804672 + Lx7 LINE L1 7528 7696 0 2 697 312 315 9 9 chr6 14712496 14712605 -134804432 + RMER15 LTR ERVL 313 421 -154 2 697 183 42 0 0 chr6 14712622 14712646 -134804391 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 697 282 232 40 0 chr6 14713126 14713192 -134803845 + PB1D10 SINE Alu 43 113 -7 2 697 30 27 0 0 chr6 14713794 14713831 -134803206 + AT_rich Low_complexity Low_complexity 1 37 0 2 697 201 176 0 0 chr6 14715230 14715264 -134801773 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 2 697 265 283 206 29 chr6 14715509 14715713 -134801324 - RMER20B LTR ERVK -236 391 152 2 697 1588 118 46 29 chr6 14716107 14716387 -134800650 + Lx LINE L1 6361 6645 -9 2 697 940 115 6 13 chr6 14716387 14716546 -134800491 + (GGGAA)n Simple_repeat Simple_repeat 3 160 0 2 697 1254 95 0 0 chr6 14716548 14716727 -134800310 + (GGAAA)n Simple_repeat Simple_repeat 2 180 0 2 697 2019 208 3 0 chr6 14716972 14717343 -134799694 + Lx LINE L1 6127 6498 -156 2 697 7374 105 122 42 chr6 14717337 14718017 -134799020 + L1_Mus1 LINE L1 4606 5403 -1164 2 697 331 253 70 50 chr6 14718017 14718030 -134799007 - PB1D10 SINE Alu -13 104 3 2 697 557 138 0 0 chr6 14718030 14718117 -134798920 - 4.5SRNA scRNA scRNA -6 88 2 2 697 7374 105 122 42 chr6 14718117 14719105 -134797932 + L1_Mus1 LINE L1 5404 6566 -1 2 697 1813 122 0 7 chr6 14719128 14719409 -134797628 + L1_Mm LINE L1 5288 5566 -317 2 697 798 246 78 0 chr6 14719412 14719603 -134797434 - ORR1C2 LTR MaLR -58 326 121 2 697 5084 63 40 0 chr6 14719634 14720305 -134796732 - L1_Mus2 LINE L1 -221 6345 5648 2 697 825 111 25 38 chr6 14720305 14720464 -134796573 + L1_Mus3 LINE L1 6482 6638 0 2 697 727 117 17 0 chr6 14720464 14720584 -134796453 - ORR1C2 LTR MaLR -239 139 18 2 697 916 191 0 0 chr6 14720803 14720971 -134796066 - L1_Mm LINE L1 -1002 4881 4714 3 697 7003 137 11 2 chr6 14720968 14722315 -134794722 + Lx LINE L1 5294 6652 -2 3 697 328 324 81 24 chr6 14722365 14722574 -134794463 - L1M5 LINE L1 -1908 4238 4018 3 697 374 312 48 16 chr6 14722608 14722859 -134794178 + L1M4 LINE L1 4963 5221 -925 3 697 348 318 96 11 chr6 14722947 14723125 -134793912 + L1M4 LINE L1 5333 5525 -659 3 697 305 286 60 20 chr6 14723150 14723250 -134793787 + B1F2 SINE Alu 46 149 0 3 697 192 77 0 0 chr6 14723809 14723835 -134793202 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 3 697 1661 229 18 50 chr6 14725020 14725402 -134791635 + Lx5 LINE L1 6460 6829 -221 3 697 611 0 27 0 chr6 14725402 14725476 -134791561 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 3 697 784 212 417 13 chr6 14725476 14725711 -134791326 - ORR1C2 LTR MaLR -54 330 1 3 697 888 163 25 66 chr6 14725711 14725908 -134791129 - ORR1C2-int LTR MaLR 0 1509 1321 3 697 240 208 196 56 chr6 14725908 14726015 -134791022 + RLTR6_Mm LTR ERV1 1 122 -532 3 697 2212 116 217 26 chr6 14726017 14726477 -134790560 + RLTR6_Mm LTR ERV1 37 584 -70 3 697 1503 282 126 59 chr6 14726590 14726819 -134790218 - RCHARR1 DNA MER1_type -102 872 653 3 697 6290 64 11 22 chr6 14726819 14727650 -134789387 - RLTR13B2 LTR ERVK 0 822 1 3 697 1503 282 126 59 chr6 14727650 14728230 -134788807 - RCHARR1 DNA MER1_type -322 652 9 3 697 216 273 0 0 chr6 14728331 14728397 -134788640 + T-rich Low_complexity Low_complexity 1 66 0 3 697 198 103 0 0 chr6 14728397 14728426 -134788611 + (TTCTCC)n Simple_repeat Simple_repeat 3 31 0 3 697 1101 99 0 0 chr6 14728822 14728963 -134788074 + B1_Mus2 SINE Alu 1 141 -6 3 697 261 0 0 0 chr6 14728965 14728994 -134788043 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 697 3646 290 52 11 chr6 14729145 14730288 -134786749 - Lx8 LINE L1 -2 7471 6281 3 697 34 0 0 0 chr6 14730353 14730387 -134786650 + AT_rich Low_complexity Low_complexity 1 34 0 3 697 392 297 114 11 chr6 14730446 14730630 -134786407 + Lx8 LINE L1 7270 7472 -1 3 697 64 67 0 0 chr6 14730630 14730750 -134786287 + AT_rich Low_complexity Low_complexity 1 120 0 3 697 1734 344 84 40 chr6 14730750 14731800 -134785237 - Lx8 LINE L1 -31 7442 6347 3 697 208 380 3 9 chr6 14732752 14732870 -134784167 + MIR SINE MIR 57 172 -104 3 697 503 296 24 36 chr6 14733300 14733465 -134783572 - RSINE1 SINE B4 0 165 3 3 697 544 193 51 15 chr6 14733623 14733760 -134783277 - Lx3A LINE L1 -1 6980 6839 3 697 1044 92 0 7 chr6 14734100 14734243 -134782794 - B1_Mm SINE Alu -5 142 1 3 697 391 21 0 0 chr6 14734437 14734484 -134782553 - Lx3_Mus LINE L1 -516 6493 6447 3 697 1241 271 8 36 chr6 14735577 14736008 -134781029 + Lx9 LINE L1 5481 5935 -1709 3 697 26 0 0 0 chr6 14736479 14736505 -134780532 + AT_rich Low_complexity Low_complexity 1 26 0 3 697 608 256 18 79 chr6 14736511 14736740 -134780297 - B3 SINE B2 0 216 2 3 697 261 0 0 0 chr6 14736877 14736906 -134780131 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 697 486 0 0 0 chr6 14736906 14736959 -134780078 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 697 185 227 74 74 chr6 14737443 14737524 -134779513 - MIRb SINE MIR -60 202 122 3 697 186 318 0 0 chr6 14737634 14737678 -134779359 - MIRb SINE MIR -8 260 217 3 697 295 336 107 16 chr6 14737736 14737857 -134779180 + MLT1B LTR MaLR 8 139 -251 3 697 1628 146 17 105 chr6 14737876 14738228 -134778809 - ORR1A4 LTR MaLR -8 321 1 3 697 575 294 64 5 chr6 14740081 14740283 -134776754 + B3 SINE B2 1 214 -2 3 697 1803 205 95 68 chr6 14740467 14740964 -134776073 - RMER1B Other Other -12 1054 545 3 697 17818 91 3 40 chr6 14741002 14744441 -134772596 + L1Md_F2 LINE L1 392 3699 -2184 3 697 35293 36 0 0 chr6 14744439 14749867 -134767170 + L1Md_T LINE L1 63 5589 -297 3 697 8965 6 0 0 chr6 14749867 14750917 -134766120 + L1Md_T LINE L1 5590 6585 0 3 697 3937 67 4 2 chr6 14750920 14751445 -134765592 + L1Md_F2 LINE L1 3686 4211 -1672 3 697 34966 51 0 4 chr6 14751446 14756905 -134760132 + L1Md_T LINE L1 55 5589 -297 3 697 8395 33 0 1 chr6 14756905 14757902 -134759135 + L1Md_T LINE L1 5590 6585 0 3 697 8818 64 0 12 chr6 14757903 14759056 -134757981 + L1Md_F2 LINE L1 4448 5586 -297 3 697 7935 57 1 0 chr6 14759056 14760049 -134756988 + L1Md_F2 LINE L1 5587 6580 -2 3 697 263 337 95 69 chr6 14760058 14760080 -134756957 + B4 SINE B4 3 24 -268 3 697 252 0 0 0 chr6 14760080 14760108 -134756929 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 697 263 337 95 69 chr6 14760108 14760359 -134756678 + B4 SINE B4 25 282 -10 3 697 252 77 19 37 chr6 14760675 14760729 -134756308 + (TTG)n Simple_repeat Simple_repeat 2 54 0 3 697 453 81 0 0 chr6 14760749 14760811 -134756226 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 697 584 262 25 152 chr6 14761638 14761836 -134755201 - B3 SINE B2 -25 191 12 3 697 294 106 0 0 chr6 14761842 14761889 -134755148 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 697 252 0 0 0 chr6 14762004 14762032 -134755005 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 697 429 282 26 0 chr6 14762049 14762166 -134754871 - B1F1 SINE Alu -27 122 3 3 697 987 109 41 38 chr6 14762339 14762534 -134754503 + MTA_Mm LTR MaLR 1 204 -196 3 697 8694 53 6 3 chr6 14762534 14763628 -134753409 + MT-int LTR MaLR 1 1098 0 3 697 1010 112 40 37 chr6 14763628 14763829 -134753208 + MTA_Mm LTR MaLR 1 399 -1 3 697 798 185 19 44 chr6 14763829 14763987 -134753050 - Lx4A LINE L1 -80 6978 6825 3 697 442 109 0 0 chr6 14763982 14764046 -134752991 - L1_Mur2 LINE L1 -929 4948 4885 3 697 390 288 93 73 chr6 14764353 14764700 -134752337 + ORR1E LTR MaLR 1 372 -7 3 697 349 313 65 23 chr6 14765292 14765508 -134751529 + L2a LINE L2 3200 3424 -2 3 697 477 0 0 0 chr6 14765727 14765780 -134751257 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 697 222 37 0 0 chr6 14766969 14766996 -134750041 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3 697 205 184 0 0 chr6 14767958 14767996 -134749041 + (CATAT)n Simple_repeat Simple_repeat 3 40 0 3 697 355 303 88 22 chr6 14768477 14768737 -134748300 - L1MB7 LINE L1 -67 6107 5827 3 697 1331 161 66 0 chr6 14769297 14769540 -134747497 + RMER6C LTR ERVK 432 690 0 3 697 180 77 0 0 chr6 14769569 14769595 -134747442 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 3 697 3139 148 16 24 chr6 14771376 14771448 -134745589 - L1_Mur1 LINE L1 -3075 2811 2748 3 697 1172 134 21 5 chr6 14771448 14771635 -134745402 - B2_Mm2 SINE B2 -5 190 1 3 697 3139 148 16 24 chr6 14771635 14772136 -134744901 - L1_Mur1 LINE L1 -3139 2747 2243 3 697 1338 137 10 69 chr6 14772129 14772420 -134744617 - L1_Mur1 LINE L1 -4077 1809 1536 3 697 4112 99 21 6 chr6 14772416 14773141 -134743896 - Lx LINE L1 -701 5953 5219 3 697 1894 203 47 22 chr6 14773333 14773450 -134743587 + MTD LTR MaLR 2 118 -301 3 697 318 50 0 0 chr6 14773450 14773490 -134743547 + (ATTG)n Simple_repeat Simple_repeat 4 43 0 3 697 1894 203 47 22 chr6 14773490 14773780 -134743257 + MTD LTR MaLR 119 417 -2 3 697 191 114 0 28 chr6 14775817 14775853 -134741184 + (TATG)n Simple_repeat Simple_repeat 2 36 0 3 697 573 90 0 0 chr6 14776051 14776140 -134740897 + (GA)n Simple_repeat Simple_repeat 1 89 0 3 697 243 235 0 56 chr6 14776440 14776494 -134740543 + B1_Mus1 SINE Alu 5 55 -93 3 697 565 287 125 21 chr6 14776561 14776753 -134740284 + B3 SINE B2 4 215 -1 3 697 506 172 8 0 chr6 14776834 14776962 -134740075 + (TCTA)n Simple_repeat Simple_repeat 1 129 0 3 697 26 30 0 0 chr6 14777991 14778024 -134739013 + AT_rich Low_complexity Low_complexity 1 33 0 3 697 36 102 0 0 chr6 14778075 14778202 -134738835 + AT_rich Low_complexity Low_complexity 1 127 0 3 697 400 378 62 68 chr6 14778785 14779154 -134737883 + MLT1G3 LTR MaLR 12 378 -217 3 697 40 0 0 0 chr6 14779444 14779484 -134737553 + AT_rich Low_complexity Low_complexity 1 40 0 3 697 23 0 0 0 chr6 14779671 14779694 -134737343 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 1421 121 25 4 chr6 14779704 14779945 -134737092 + RLTR10A LTR ERVK 166 411 0 3 697 1223 94 0 21 chr6 14779947 14780153 -134736884 + RLTR10-int LTR ERVK 304 577 -1410 3 697 372 83 0 0 chr6 14780127 14780175 -134736862 + IAP-d-int LTR ERVK 130 177 -6365 3 697 710 203 38 6 chr6 14780166 14780325 -134736712 + IAP-d-int LTR ERVK 340 503 -6039 3 697 3141 61 5 0 chr6 14780325 14780717 -134736320 + IAP-d-int LTR ERVK 5007 5400 -1142 3 697 998 54 295 0 chr6 14780715 14780912 -134736125 + IAP-d-int LTR ERVK 5766 6021 -521 3 697 1462 53 53 0 chr6 14780915 14781103 -134735934 + IAP-d-int LTR ERVK 6128 6325 -217 3 697 2774 95 59 18 chr6 14781278 14781729 -134735308 + RLTR10-int LTR ERVK 1303 1739 -248 3 697 1033 121 16 0 chr6 14781793 14782031 -134735006 + RLTR10A LTR ERVK 137 411 0 3 697 2360 109 198 12 chr6 14782031 14782456 -134734581 - Lx2 LINE L1 -758 6239 5736 3 697 310 267 170 7 chr6 14782923 14783070 -134733967 + L3 LINE CR1 2091 2261 -2228 3 697 1114 128 16 0 chr6 14783480 14783668 -134733369 - L1_Mus3 LINE L1 -1 6637 6447 3 697 1297 279 22 0 chr6 14783719 14784077 -134732960 - ORR1D2 LTR MaLR -4 366 1 3 697 258 409 58 0 chr6 14784462 14784616 -134732421 + L3 LINE CR1 3906 4068 -421 3 697 311 313 28 78 chr6 14785103 14785245 -134731792 - RSINE1 SINE B4 -28 137 3 3 697 292 366 7 13 chr6 14785420 14785575 -134731462 + GA-rich Low_complexity Low_complexity 1 154 0 3 697 3972 46 0 32 chr6 14786368 14786866 -134730171 - LTRIS_Mm LTR ERV1 0 482 1 3 697 300 27 0 0 chr6 14787951 14787988 -134729049 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 697 339 326 129 14 chr6 14788387 14788527 -134728510 + HAL1-3A_ME LINE L1 2284 2439 -419 3 697 483 274 212 31 chr6 14791881 14792107 -134724930 + MLT1A0 LTR MaLR 66 332 -33 3 697 599 314 33 112 chr6 14792125 14792403 -134724634 - Lx9 LINE L1 -190 7454 7192 3 697 1366 82 5 0 chr6 14792403 14792587 -134724450 + L1_Mus2 LINE L1 6382 6566 0 3 697 599 314 33 112 chr6 14792587 14792792 -134724245 - Lx9 LINE L1 -453 7191 7009 3 697 694 324 10 5 chr6 14792950 14793155 -134723882 - B4 SINE B4 -82 210 5 3 697 262 300 109 28 chr6 14793288 14793610 -134723427 - L1M4 LINE L1 -1120 5026 4679 3 697 349 244 77 17 chr6 14794350 14794467 -134722570 - Lx5 LINE L1 -3 7047 6924 3 697 5098 101 87 4 chr6 14794467 14795252 -134721785 + Lx3_Mus LINE L1 6160 7009 0 3 697 1650 171 58 3 chr6 14795257 14795602 -134721435 + Lx5 LINE L1 5727 6090 -960 3 697 360 0 0 0 chr6 14795603 14795643 -134721394 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 697 351 179 126 12 chr6 14795707 14795798 -134721239 - L1MA7 LINE L1 -133 6158 6056 3 697 233 256 98 49 chr6 14795996 14796078 -134720959 - MTEb LTR MaLR -14 365 280 3 697 1154 43 0 0 chr6 14796196 14796334 -134720703 + B1_Mm SINE Alu 2 139 -8 4 697 188 119 29 43 chr6 14796637 14796707 -134720330 + T-rich Low_complexity Low_complexity 2 70 0 4 697 207 0 0 0 chr6 14797319 14797342 -134719695 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 697 365 292 26 0 chr6 14797342 14797455 -134719582 - Lx8 LINE L1 -142 7331 7216 4 697 31959 72 2 54 chr6 14797512 14801461 -134715576 - L1Md_F2 LINE L1 -15 6567 2964 4 697 8180 45 0 1 chr6 14801461 14802458 -134714579 + L1Md_T LINE L1 5587 6582 0 4 697 31959 75 2 47 chr6 14802458 14805064 -134711973 - L1Md_F2 LINE L1 -2920 2963 354 4 697 1401 81 0 0 chr6 14805102 14805288 -134711749 - L1_Mus2 LINE L1 0 6566 6381 4 697 1767 302 60 43 chr6 14805299 14806044 -134710993 - Lx8 LINE L1 -479 6994 6237 4 697 18886 101 40 23 chr6 14806133 14809890 -134707147 + L1Md_F2 LINE L1 231 4046 -1837 4 697 462 38 0 0 chr6 14809873 14809926 -134707111 + L1Md_F2 LINE L1 5533 5585 -298 4 697 7167 88 8 12 chr6 14809927 14810927 -134706110 + L1Md_F2 LINE L1 5587 6582 0 4 87 3385 159 41 0 chr6 14810940 14811526 -134705511 + Lx2 LINE L1 6387 6996 -1 4 698 1504 199 28 15 chr6 14812651 14812989 -134704048 - ORR1B2 LTR MaLR -8 359 1 4 698 1095 187 9 44 chr6 14813645 14813874 -134703163 - URR1B DNA MER1_type 0 225 5 4 698 22 0 0 0 chr6 14814522 14814544 -134702493 + AT_rich Low_complexity Low_complexity 1 22 0 4 698 670 276 32 36 chr6 14814832 14815084 -134701953 + Lx9 LINE L1 7352 7602 -42 4 698 16609 172 21 15 chr6 14815290 14816216 -134700821 + L1_Mur2 LINE L1 2492 3417 -2460 4 698 327 25 0 0 chr6 14816216 14816256 -134700781 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 4 698 1039 82 0 0 chr6 14816256 14816390 -134700647 - B1_Mm SINE Alu -13 134 1 4 698 16609 172 21 15 chr6 14816390 14818726 -134698311 + L1_Mur2 LINE L1 3418 5780 -97 4 698 3052 35 8 0 chr6 14818726 14819097 -134697940 + L1Md_F2 LINE L1 6209 6582 0 4 698 16609 172 21 15 chr6 14819097 14819194 -134697843 + L1_Mur2 LINE L1 5781 5873 -4 4 698 1237 226 129 52 chr6 14819193 14819557 -134697480 + Lx2B LINE L1 6599 6990 -10 4 698 244 274 26 52 chr6 14820076 14820153 -134696884 - B4A SINE B4 -213 79 5 4 698 609 69 0 0 chr6 14820776 14820863 -134696174 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 698 255 93 0 0 chr6 14822059 14822102 -134694935 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 4 698 1695 61 43 4 chr6 14822116 14822347 -134694690 - L1_Mus1 LINE L1 0 6567 6328 4 698 1042 145 35 0 chr6 14822356 14822557 -134694480 - L1_Mus2 LINE L1 -437 6201 5978 4 698 584 28 14 0 chr6 14822508 14822580 -134694457 + L1_Mus1 LINE L1 5970 6042 -525 4 698 195 69 0 0 chr6 14822698 14822727 -134694310 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 698 482 248 0 48 chr6 14822740 14822905 -134694132 - Lx6 LINE L1 -1 7459 7303 4 698 999 178 113 34 chr6 14822905 14823109 -134693928 - URR1A DNA MER1_type 0 226 7 4 698 567 265 129 5 chr6 14823131 14823317 -134693720 - Lx6 LINE L1 -176 7284 7076 4 698 38622 42 12 4 chr6 14823815 14829948 -134687089 - L1Md_A LINE L1 -1 6581 392 4 698 242 187 44 0 chr6 14830195 14830286 -134686751 + (CA)n Simple_repeat Simple_repeat 1 95 0 4 698 456 188 21 21 chr6 14830509 14830650 -134686387 + (TA)n Simple_repeat Simple_repeat 1 141 0 4 698 3578 105 2 4 chr6 14830672 14831187 -134685850 - L1_Mus4 LINE L1 -20 6616 6103 4 698 23 0 0 0 chr6 14831938 14831961 -134685076 + AT_rich Low_complexity Low_complexity 1 23 0 4 698 486 0 0 0 chr6 14833154 14833208 -134683829 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 4 698 649 312 85 9 chr6 14833223 14833446 -134683591 - B4A SINE B4 -4 288 49 4 698 28 48 0 0 chr6 14833864 14833906 -134683131 + AT_rich Low_complexity Low_complexity 1 42 0 4 698 21 57 0 0 chr6 14835154 14835189 -134681848 + AT_rich Low_complexity Low_complexity 1 35 0 4 698 1676 206 22 30 chr6 14835349 14835715 -134681322 + MTE2a LTR MaLR 1 363 -16 4 698 241 395 18 106 chr6 14836364 14836582 -134680455 + Tigger5 DNA MER2_type 53 251 -2155 4 698 762 161 0 53 chr6 14836585 14836775 -134680262 + CT-rich Low_complexity Low_complexity 1 180 0 4 698 265 267 58 18 chr6 14836809 14836908 -134680129 - PB1D10 SINE Alu -2 118 7 4 698 376 327 98 14 chr6 14837441 14837655 -134679382 + L1M5 LINE L1 2340 2571 -3575 4 698 505 288 89 9 chr6 14838076 14838446 -134678591 - L1MD2 LINE L1 -218 6141 5727 4 698 195 100 0 0 chr6 14838602 14838632 -134678405 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 698 301 258 358 0 chr6 14838825 14838945 -134678092 + RSINE1 SINE B4 3 165 0 4 698 199 357 29 0 chr6 14839826 14839896 -134677141 + L3 LINE CR1 4416 4487 -2 4 698 662 332 144 53 chr6 14841770 14842187 -134674850 - MLT1F1 LTR MaLR 0 569 94 4 698 247 264 0 89 chr6 14842232 14842311 -134674726 + MER31B LTR ERV1 221 292 -174 4 698 378 0 0 0 chr6 14842632 14842674 -134674363 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 698 3597 61 2 2 chr6 14842714 14843173 -134673864 + L1_Mus1 LINE L1 6108 6566 -1 4 698 492 18 0 0 chr6 14843199 14843256 -134673781 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 698 234 239 27 27 chr6 14843459 14843532 -134673505 + GA-rich Low_complexity Low_complexity 2 74 0 4 698 254 206 16 0 chr6 14843544 14843607 -134673430 + GA-rich Low_complexity Low_complexity 1 64 0 4 698 468 0 0 0 chr6 14844054 14844106 -134672931 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 698 280 328 61 30 chr6 14844204 14844336 -134672701 + L2c LINE L2 3242 3377 -10 4 698 1144 68 0 33 chr6 14844662 14844815 -134672222 - B1_Mus1 SINE Alu 0 148 1 4 698 204 276 26 13 chr6 14845230 14845307 -134671730 + GA-rich Low_complexity Low_complexity 5 82 0 4 698 24 32 0 0 chr6 14847030 14847061 -134669976 + AT_rich Low_complexity Low_complexity 1 31 0 4 698 189 0 0 0 chr6 14848191 14848212 -134668825 + (T)n Simple_repeat Simple_repeat 1 21 0 4 698 513 0 0 0 chr6 14849610 14849667 -134667370 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 698 242 116 23 0 chr6 14849667 14849710 -134667327 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 698 228 231 0 19 chr6 14850878 14850931 -134666106 + G-rich Low_complexity Low_complexity 3 54 0 4 698 25 31 0 0 chr6 14851286 14851318 -134665719 + GC_rich Low_complexity Low_complexity 1 32 0 4 698 276 130 0 0 chr6 14851320 14851366 -134665671 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 698 300 143 17 35 chr6 14851381 14851439 -134665598 + HAL1-3A_ME LINE L1 1976 2032 -826 4 698 285 29 0 0 chr6 14852066 14852100 -134664937 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4 698 876 159 6 11 chr6 14852688 14852866 -134664171 + CT-rich Low_complexity Low_complexity 3 179 0 4 698 220 216 0 19 chr6 14854214 14854266 -134662771 + CT-rich Low_complexity Low_complexity 2 52 0 4 698 256 138 31 0 chr6 14857422 14857487 -134659550 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 4 698 1178 69 0 0 chr6 14858985 14859130 -134657907 + B1_Mus2 SINE Alu 3 147 0 4 698 277 169 10 135 chr6 14859325 14859341 -134657696 - ID_B1 SINE B4 -20 204 121 4 698 452 162 25 0 chr6 14859341 14859421 -134657616 - B1F2 SINE Alu -28 121 40 4 698 204 315 0 52 chr6 14859729 14859781 -134657256 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 4 698 447 19 0 0 chr6 14859781 14859833 -134657204 + (CATA)n Simple_repeat Simple_repeat 1 52 0 4 698 204 315 0 52 chr6 14859833 14859877 -134657160 + (TCCA)n Simple_repeat Simple_repeat 3 42 0 4 698 262 128 20 41 chr6 14859969 14860018 -134657019 - L5 LINE RTE -1586 679 632 4 698 889 284 151 9 chr6 14861015 14861346 -134655691 + MTD LTR MaLR 28 405 -14 4 698 850 331 67 46 chr6 14861398 14861805 -134655232 + MTC-int LTR MaLR 311 732 -366 4 698 378 0 0 0 chr6 14861805 14861847 -134655190 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 698 807 331 68 46 chr6 14861847 14861962 -134655075 + MTC-int LTR MaLR 733 843 -255 4 698 708 253 23 12 chr6 14861977 14862149 -134654888 + B3 SINE B2 37 210 -6 4 698 572 282 107 5 chr6 14862619 14862815 -134654222 - B3 SINE B2 0 216 1 4 698 307 286 100 94 chr6 14863237 14863407 -134653630 - L1ME1 LINE L1 -50 6129 5959 4 698 441 0 0 0 chr6 14863583 14863632 -134653405 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 4 698 24 0 0 0 chr6 14864067 14864091 -134652946 + AT_rich Low_complexity Low_complexity 1 24 0 4 698 32 0 0 0 chr6 14864928 14864960 -134652077 + AT_rich Low_complexity Low_complexity 1 32 0 4 698 351 354 64 23 chr6 14865016 14865236 -134651801 - LTR40b LTR ERVL -220 242 14 4 698 223 376 184 11 chr6 14865307 14865449 -134651588 - L3 LINE CR1 -1109 3380 3204 4 698 521 30 15 0 chr6 14865449 14865516 -134651521 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 4 698 223 376 184 11 chr6 14865516 14865639 -134651398 - L3 LINE CR1 -1286 3203 3069 4 698 263 368 90 60 chr6 14866248 14866549 -134650488 - MER58B DNA MER1_type 0 341 32 4 698 651 163 159 23 chr6 14867847 14867979 -134649058 - B1_Mur4 SINE Alu 0 150 1 4 698 1968 188 38 38 chr6 14868684 14869105 -134647932 + MTC LTR MaLR 1 421 0 4 698 189 337 74 32 chr6 14870449 14870544 -134646493 + MIRc SINE MIR 26 124 -144 4 698 26 0 0 0 chr6 14871287 14871313 -134645724 + AT_rich Low_complexity Low_complexity 1 26 0 4 698 2970 184 123 26 chr6 14871540 14872220 -134644817 - Lx2B LINE L1 -1 6999 6254 4 698 1663 143 20 27 chr6 14872367 14872668 -134644369 + Lx2 LINE L1 6699 6997 0 4 698 22 0 0 0 chr6 14873121 14873143 -134643894 + AT_rich Low_complexity Low_complexity 1 22 0 4 698 26 0 0 0 chr6 14873643 14873669 -134643368 + AT_rich Low_complexity Low_complexity 1 26 0 4 698 222 62 0 0 chr6 14874104 14874136 -134642901 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 698 832 116 18 30 chr6 14874183 14874352 -134642685 - Lx LINE L1 -10 6644 6478 4 698 23 0 0 0 chr6 14874784 14874807 -134642230 + AT_rich Low_complexity Low_complexity 1 23 0 4 698 661 305 70 22 chr6 14876296 14876524 -134640513 + MLT1H2 LTR MaLR 3 241 -248 4 698 1042 92 0 0 chr6 14877810 14877952 -134639085 + B1_Mm SINE Alu 6 147 0 4 698 180 0 0 0 chr6 14877954 14877974 -134639063 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 5 698 559 360 106 47 chr6 14878005 14878279 -134638758 + B4A SINE B4 2 291 -1 5 698 582 238 9 117 chr6 14878316 14878530 -134638507 - RLTR31_Mm LTR ERVK 0 561 371 5 698 2263 157 25 19 chr6 14878574 14879031 -134638006 - RLTR31_Mm LTR ERVK -146 415 1 5 698 37600 15 2 8 chr6 14879220 14884426 -134632611 + L1Md_A LINE L1 416 5586 -297 5 698 8766 16 0 0 chr6 14884426 14885421 -134631616 + L1Md_A LINE L1 5587 6581 -1 5 698 225 94 0 0 chr6 14886487 14886519 -134630518 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 698 318 364 16 0 chr6 14886864 14886985 -134630052 - Lx8 LINE L1 -153 7320 7198 5 698 182 171 29 0 chr6 14888064 14888099 -134628938 + L3 LINE CR1 3653 3688 -801 5 698 236 0 91 0 chr6 14888862 14888906 -134628131 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 698 1225 249 64 45 chr6 14888911 14889303 -134627734 + MTD LTR MaLR 7 405 -14 5 698 306 284 0 16 chr6 14889622 14889725 -134627312 - MLT1A LTR MaLR -240 125 28 5 698 239 256 61 0 chr6 14890106 14890188 -134626849 + L3 LINE CR1 3652 3738 -751 5 698 5625 97 79 9 chr6 14890977 14892559 -134624478 + L1VL2 LINE L1 120 1826 -1789 5 698 302 304 0 0 chr6 14892712 14892791 -134624246 - PB1D10 SINE Alu -14 103 25 5 698 462 36 0 0 chr6 14893139 14893195 -134623842 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 5 698 639 121 0 0 chr6 14893195 14893294 -134623743 + (TC)n Simple_repeat Simple_repeat 2 100 0 5 698 3089 98 6 49 chr6 14893297 14893788 -134623249 - L1_Mus2 LINE L1 -9 6557 6088 5 698 1855 66 0 0 chr6 14893788 14894030 -134623007 + L1_Mus2 LINE L1 5829 6070 -496 5 698 30 0 0 0 chr6 14894092 14894122 -134622915 + AT_rich Low_complexity Low_complexity 1 30 0 5 698 2454 175 21 6 chr6 14894345 14894811 -134622226 + Lx4A LINE L1 6583 7055 -3 5 698 287 292 28 71 chr6 14894884 14895017 -134622020 - MIR SINE MIR -27 241 109 5 698 342 342 166 18 chr6 14895318 14895595 -134621442 + MLT1A0 LTR MaLR 4 321 -44 5 698 308 273 47 64 chr6 14896013 14896185 -134620852 - L1MCc LINE L1 -4992 1431 1263 5 698 27 112 0 0 chr6 14896856 14896981 -134620056 + AT_rich Low_complexity Low_complexity 1 125 0 5 698 26 50 0 0 chr6 14897166 14897206 -134619831 + AT_rich Low_complexity Low_complexity 1 40 0 5 698 1077 91 115 103 chr6 14897457 14897691 -134619346 - L1_Mus2 LINE L1 -1 6565 6329 5 698 1069 63 42 0 chr6 14898148 14898290 -134618747 - B1_Mus1 SINE Alu 0 148 1 5 698 638 276 88 0 chr6 14899630 14899822 -134617215 + B3 SINE B2 8 216 0 5 698 21 57 0 0 chr6 14900093 14900128 -134616909 + AT_rich Low_complexity Low_complexity 1 35 0 5 698 419 312 35 35 chr6 14900449 14900592 -134616445 + B3A SINE B2 51 193 -5 5 698 22 0 0 0 chr6 14901579 14901601 -134615436 + AT_rich Low_complexity Low_complexity 1 22 0 5 698 250 345 107 18 chr6 14901750 14901862 -134615175 - RSINE1 SINE B4 -30 135 14 5 698 462 307 41 25 chr6 14902001 14902198 -134614839 + B3 SINE B2 1 200 -16 5 698 352 289 0 9 chr6 14903555 14903670 -134613367 + CT-rich Low_complexity Low_complexity 1 114 0 5 698 204 40 0 0 chr6 14903670 14903695 -134613342 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 698 418 313 57 114 chr6 14903831 14904076 -134612961 - B4A SINE B4 -60 232 2 5 698 27 62 0 0 chr6 14904505 14904553 -134612484 + AT_rich Low_complexity Low_complexity 1 48 0 5 698 417 20 0 0 chr6 14904921 14904971 -134612066 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 698 235 339 9 52 chr6 14905047 14905162 -134611875 + L2 LINE L2 2445 2554 -865 5 698 305 360 74 47 chr6 14905807 14906104 -134610933 - L2 LINE L2 -626 2793 2489 5 698 420 306 45 45 chr6 14906670 14906824 -134610213 - B3 SINE B2 -25 191 37 5 698 1178 68 0 0 chr6 14906893 14907040 -134609997 + B1_Mus2 SINE Alu 1 147 0 5 698 349 123 41 0 chr6 14907309 14907382 -134609655 + CT-rich Low_complexity Low_complexity 2 77 0 5 698 6083 139 35 10 chr6 14908195 14909237 -134607800 - Lx3A LINE L1 -1 6980 5913 5 698 7263 99 7 12 chr6 14909235 14910398 -134606639 - Lx3_Mus LINE L1 -279 6021 4838 5 698 38095 45 0 3 chr6 14910396 14916922 -134600115 - L1Md_T LINE L1 0 6585 1 5 698 10282 109 12 6 chr6 14916922 14918558 -134598479 - Lx3_Mus LINE L1 -1013 4873 3229 5 698 286 179 0 35 chr6 14918693 14918751 -134598286 - MTE2b LTR MaLR -323 56 1 5 698 322 314 41 8 chr6 14918922 14919044 -134597993 - MLT1I LTR MaLR -275 136 11 5 698 891 193 119 0 chr6 14920437 14920639 -134596398 + URR1A DNA MER1_type 1 226 0 5 698 1566 219 29 36 chr6 14920679 14921164 -134595873 - RMER4B LTR ERVK 0 466 1 5 698 308 254 0 0 chr6 14921836 14921895 -134595142 - L3 LINE CR1 -1 4488 4430 5 698 1038 138 77 5 chr6 14922066 14922262 -134594775 - Lx2B LINE L1 -12 6988 6779 5 698 482 331 28 0 chr6 14922394 14922539 -134594498 - RSINE1 SINE B4 -6 159 11 5 698 924 39 130 8 chr6 14922612 14922743 -134594294 + B1_Mus2 SINE Alu 1 147 0 5 698 226 306 64 9 chr6 14923003 14923112 -134593925 + LTR50 LTR ERVL 150 264 -531 5 698 534 191 28 19 chr6 14923293 14923400 -134593637 - B1_Mur2 SINE Alu -2 147 40 5 698 210 222 0 0 chr6 14923400 14923445 -134593592 + (CCTG)n Simple_repeat Simple_repeat 2 46 0 5 698 300 220 0 33 chr6 14923446 14923507 -134593530 - PB1D9 SINE Alu -61 59 1 5 698 269 265 0 56 chr6 14923507 14923518 -134593519 - B4 SINE B4 -148 144 77 5 698 339 266 51 0 chr6 14923577 14923656 -134593381 + RSINE1 SINE B4 17 99 -66 5 698 213 196 0 0 chr6 14924013 14924059 -134592978 + (TTG)n Simple_repeat Simple_repeat 3 48 0 5 698 24 77 0 0 chr6 14924356 14924408 -134592629 + AT_rich Low_complexity Low_complexity 1 52 0 5 698 222 118 0 0 chr6 14925177 14925211 -134591826 + (T)n Simple_repeat Simple_repeat 1 34 0 5 698 403 298 43 9 chr6 14925266 14925381 -134591656 - PB1D9 SINE Alu 0 120 2 5 698 32 26 0 0 chr6 14925727 14925766 -134591271 + AT_rich Low_complexity Low_complexity 1 39 0 5 698 373 334 62 11 chr6 14925778 14925893 -134591144 + B4 SINE B4 2 121 -171 5 698 291 28 0 0 chr6 14925893 14925929 -134591108 + (CAGAGA)n Simple_repeat Simple_repeat 4 39 0 5 698 301 347 61 76 chr6 14925929 14925944 -134591093 + B4A SINE B4 122 130 -162 5 698 300 27 0 0 chr6 14925983 14926020 -134591017 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 698 423 0 0 0 chr6 14926020 14926067 -134590970 + (CTA)n Simple_repeat Simple_repeat 3 49 0 5 698 407 259 87 81 chr6 14926178 14926350 -134590687 - ID_B1 SINE B4 -12 212 40 5 698 21 0 0 0 chr6 14927741 14927762 -134589275 + AT_rich Low_complexity Low_complexity 1 21 0 5 698 1218 176 3 8 chr6 14927976 14928336 -134588701 + (TG)n Simple_repeat Simple_repeat 1 357 0 5 698 30 45 0 0 chr6 14931543 14931587 -134585450 + AT_rich Low_complexity Low_complexity 1 44 0 5 698 756 0 0 0 chr6 14932295 14932379 -134584658 + (TTC)n Simple_repeat Simple_repeat 2 85 0 5 698 360 0 0 0 chr6 14932380 14932420 -134584617 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 698 444 243 17 35 chr6 14932422 14932537 -134584500 - PB1D9 SINE Alu -6 114 2 5 698 1379 254 86 10 chr6 14932779 14933164 -134583873 + MTD LTR MaLR 1 414 -5 5 698 207 186 67 17 chr6 14935186 14935246 -134581791 - MIRb SINE MIR -19 249 187 5 698 21 0 0 0 chr6 14935265 14935286 -134581751 + AT_rich Low_complexity Low_complexity 1 21 0 5 698 765 304 68 23 chr6 14935337 14935647 -134581390 + MTE2a LTR MaLR 51 374 -5 5 698 657 250 70 15 chr6 14935955 14936154 -134580883 - B3 SINE B2 -6 210 1 5 698 869 264 62 0 chr6 14936173 14936366 -134580671 - B3 SINE B2 -5 211 7 5 698 261 0 0 0 chr6 14936574 14936603 -134580434 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 698 27 0 0 0 chr6 14938706 14938733 -134578304 + AT_rich Low_complexity Low_complexity 1 27 0 5 698 1395 201 17 69 chr6 14939009 14939357 -134577680 - Lx7 LINE L1 0 7696 7367 5 698 21 0 0 0 chr6 14939407 14939428 -134577609 + AT_rich Low_complexity Low_complexity 1 21 0 5 698 1093 161 0 5 chr6 14939501 14939688 -134577349 - B2_Mm2 SINE B2 -9 186 1 5 698 2454 260 32 42 chr6 14939697 14940419 -134576618 - Lx7 LINE L1 -381 7315 6601 5 698 6306 184 63 30 chr6 14940411 14941436 -134575601 - L1_Mur3 LINE L1 -1764 4116 3055 5 698 189 0 0 0 chr6 14941436 14941457 -134575580 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 698 6306 184 63 30 chr6 14941457 14942017 -134575020 - L1_Mur3 LINE L1 -2826 3054 2481 5 87 3723 57 0 0 chr6 14942014 14942471 -134574566 - L1_Mus1 LINE L1 -332 6235 5779 5 699 252 77 0 0 chr6 14942528 14942567 -134574470 + (T)n Simple_repeat Simple_repeat 1 39 0 5 699 680 165 161 24 chr6 14942570 14942781 -134574256 - L1_Mur3 LINE L1 -3412 2468 2229 5 699 445 262 36 31 chr6 14943319 14943512 -134573525 + L1MC1 LINE L1 4041 4234 -1912 5 699 1054 110 7 0 chr6 14943687 14943832 -134573205 - B1_Mus1 SINE Alu 0 148 3 5 699 305 346 119 69 chr6 14943832 14944034 -134573003 - B4A SINE B4 -11 213 2 5 699 365 405 19 28 chr6 14944595 14944806 -134572231 + B4 SINE B4 84 292 0 5 699 262 163 20 30 chr6 14944807 14944908 -134572129 + (CA)n Simple_repeat Simple_repeat 1 100 0 5 699 549 315 40 101 chr6 14944942 14945291 -134571746 + L1MC1 LINE L1 5341 5671 -662 5 699 3461 74 9 0 chr6 14945291 14945748 -134571289 + L1_Mus1 LINE L1 6107 6567 0 5 699 549 315 40 101 chr6 14945748 14945800 -134571237 + L1MC1 LINE L1 5672 5719 -614 5 699 298 296 0 0 chr6 14945800 14945871 -134571166 - ID4_ SINE ID -11 72 2 5 699 549 315 40 101 chr6 14945871 14946318 -134570719 + L1MC1 LINE L1 5720 6137 -196 5 699 250 216 39 0 chr6 14946935 14946986 -134570051 - PB1D10 SINE Alu -7 110 58 5 699 267 79 0 0 chr6 14947013 14947051 -134569986 + (CATA)n Simple_repeat Simple_repeat 4 41 0 5 699 1359 212 57 3 chr6 14948892 14949241 -134567796 + ORR1B1 LTR MaLR 4 361 -6 5 699 1470 234 14 9 chr6 14949772 14950117 -134566920 - Lx9 LINE L1 -709 6935 6589 5 699 373 317 60 66 chr6 14950562 14951065 -134565972 - L1ME3A LINE L1 -15 6158 5659 5 699 850 303 112 9 chr6 14951113 14951481 -134565556 + MTD LTR MaLR 3 403 -18 6 699 309 175 35 0 chr6 14952142 14952199 -134564838 - B1_Mus2 SINE Alu 0 147 89 6 699 557 183 9 9 chr6 14952260 14952365 -134564672 - Lx9 LINE L1 -707 6937 6833 6 699 502 163 2 21 chr6 14952367 14952469 -134564568 - B1_Mus1 SINE Alu -34 93 2 6 699 372 315 9 0 chr6 14952511 14952619 -134564418 + PB1D7 SINE Alu 3 111 -9 6 699 201 162 0 0 chr6 14953109 14953146 -134563891 + T-rich Low_complexity Low_complexity 1 37 0 6 699 21 57 0 0 chr6 14953705 14953740 -134563297 + AT_rich Low_complexity Low_complexity 1 35 0 6 699 401 389 31 19 chr6 14957195 14957452 -134559585 + B4A SINE B4 14 273 -19 6 699 1306 47 0 12 chr6 14957833 14958005 -134559032 - L1_Mus1 LINE L1 0 6567 6398 6 699 1578 81 0 5 chr6 14958005 14958216 -134558821 + L1_Mus1 LINE L1 6083 6292 -275 6 699 212 318 10 120 chr6 14958321 14958421 -134558616 + B4 SINE B4 82 170 -122 6 699 601 378 56 30 chr6 14959067 14959334 -134557703 - B4A SINE B4 0 292 19 6 699 3154 56 8 0 chr6 14960010 14960403 -134556634 + MTA_Mm LTR MaLR 1 396 0 6 699 343 235 0 36 chr6 14960561 14960645 -134556392 - MLT1A LTR MaLR -19 355 275 6 699 335 327 83 6 chr6 14961694 14961863 -134555174 - B3A SINE B2 -16 182 1 6 699 218 156 0 22 chr6 14961925 14961971 -134555066 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 6 699 731 291 134 31 chr6 14962224 14962337 -134554700 - L1MC2 LINE L1 -25 6319 6200 6 699 1247 251 32 35 chr6 14962337 14962708 -134554329 - ORR1D2 LTR MaLR 0 370 1 6 699 731 291 134 31 chr6 14962708 14963147 -134553890 - L1MC2 LINE L1 -145 6199 5710 6 699 515 188 0 8 chr6 14963185 14963303 -134553734 + CT-rich Low_complexity Low_complexity 4 120 0 6 699 5676 110 32 33 chr6 14963814 14964781 -134552256 - Lx3_Mus LINE L1 -12 6997 6032 6 699 1224 86 96 0 chr6 14964864 14965051 -134551986 + Lx3A LINE L1 5812 6016 -965 6 699 23 0 0 0 chr6 14965593 14965616 -134551421 + AT_rich Low_complexity Low_complexity 1 23 0 6 699 228 67 0 0 chr6 14966453 14966483 -134550554 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 6 699 1387 221 21 50 chr6 14966485 14966823 -134550214 - Lx5 LINE L1 -16 7034 6707 6 699 330 312 61 23 chr6 14966828 14966959 -134550078 + ID_B1 SINE B4 84 219 -5 6 699 186 167 0 0 chr6 14967099 14967135 -134549902 + T-rich Low_complexity Low_complexity 1 36 0 6 699 964 110 0 0 chr6 14967137 14967282 -134549755 - L1_Mus1 LINE L1 0 6567 6423 6 699 318 282 121 26 chr6 14967937 14968141 -134548896 + MIR SINE MIR 28 252 -10 6 699 2629 114 7 17 chr6 14968498 14968916 -134548121 - L1_Mus3 LINE L1 0 6638 6225 6 699 296 269 15 15 chr6 14971073 14971205 -134545832 - Lx9 LINE L1 -6 7638 7507 6 699 230 160 0 20 chr6 14971221 14971272 -134545765 + CT-rich Low_complexity Low_complexity 3 52 0 6 699 523 318 0 0 chr6 14971491 14971620 -134545417 - B4A SINE B4 -2 290 162 6 699 246 105 0 0 chr6 14971743 14971781 -134545256 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 699 219 290 14 14 chr6 14971815 14971885 -134545152 - B4 SINE B4 -212 80 11 6 699 1071 231 149 45 chr6 14972343 14972678 -134544359 - ORR1D2 LTR MaLR 0 370 1 6 699 27 29 0 0 chr6 14972732 14972766 -134544271 + AT_rich Low_complexity Low_complexity 1 34 0 6 699 758 11 11 0 chr6 14973378 14973469 -134543568 + (GA)n Simple_repeat Simple_repeat 1 92 0 6 699 1137 89 0 0 chr6 14973471 14973639 -134543398 + (GAA)n Simple_repeat Simple_repeat 1 168 0 6 699 324 330 11 0 chr6 14974142 14974236 -134542801 + PB1D10 SINE Alu 1 95 -22 6 699 4978 101 134 7 chr6 14974930 14975736 -134541301 - Lx3A LINE L1 -3 6978 6071 6 699 977 254 12 85 chr6 14975861 14976192 -134540845 - Lx9 LINE L1 -434 7210 6904 6 699 657 146 0 21 chr6 14976209 14976349 -134540688 + (TA)n Simple_repeat Simple_repeat 2 138 0 6 699 2415 317 61 45 chr6 14976714 14977028 -134540009 - Lx8 LINE L1 -100 7373 7054 6 699 2500 40 12 6 chr6 14977028 14977354 -134539683 - L1Md_F3 LINE L1 0 6584 6257 6 699 2415 317 61 45 chr6 14977354 14978361 -134538676 - Lx8 LINE L1 -420 7053 6030 6 699 25 51 0 0 chr6 14979301 14979340 -134537697 + AT_rich Low_complexity Low_complexity 1 39 0 6 699 255 332 116 12 chr6 14979425 14979666 -134537371 - Lx8 LINE L1 -2 7471 7206 6 699 293 315 9 9 chr6 14980090 14980199 -134536838 - LTR79 LTR ERVL -63 464 356 6 699 209 108 27 0 chr6 14980326 14980363 -134536674 + (GAAA)n Simple_repeat Simple_repeat 1 38 0 6 699 1034 103 0 0 chr6 14981736 14981882 -134535155 + B1_Mus2 SINE Alu 2 147 0 6 699 414 0 0 0 chr6 14983157 14983203 -134533834 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 699 5978 168 53 25 chr6 14983207 14984451 -134532586 - Lx3C LINE L1 -2 6974 5700 6 699 275 71 24 0 chr6 14985025 14985067 -134531970 + (TTA)n Simple_repeat Simple_repeat 2 44 0 6 699 291 54 0 0 chr6 14985224 14985261 -134531776 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 699 1865 289 176 25 chr6 14985362 14986136 -134530901 - Lx8 LINE L1 -386 7087 6197 6 699 25 0 0 0 chr6 14987280 14987305 -134529732 + AT_rich Low_complexity Low_complexity 1 25 0 6 699 558 346 6 0 chr6 14987308 14987464 -134529573 - RSINE1 SINE B4 0 165 9 6 699 22 56 0 0 chr6 14987854 14987890 -134529147 + AT_rich Low_complexity Low_complexity 1 36 0 6 699 21 36 0 0 chr6 14989339 14989367 -134527670 + AT_rich Low_complexity Low_complexity 1 28 0 6 699 37 23 0 0 chr6 14990976 14991020 -134526017 + AT_rich Low_complexity Low_complexity 1 44 0 6 699 1095 95 0 0 chr6 14991029 14991177 -134525860 + B1_Mus1 SINE Alu 1 148 0 6 699 588 155 0 0 chr6 14991628 14991639 -134525398 + Lx3_Mus LINE L1 5775 5785 -92 6 699 3232 82 11 0 chr6 14991639 14992088 -134524949 - Lx3_Mus LINE L1 0 7009 6556 6 699 5009 102 11 11 chr6 14992088 14992210 -134524827 + Lx3_Mus LINE L1 5793 5918 -1091 6 699 180 0 0 0 chr6 14992210 14992230 -134524807 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 699 5009 102 11 11 chr6 14992230 14992851 -134524186 + Lx3_Mus LINE L1 5919 6535 -474 6 699 21 36 0 0 chr6 14993123 14993151 -134523886 + AT_rich Low_complexity Low_complexity 1 28 0 6 699 429 129 0 0 chr6 14993215 14993285 -134523752 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 699 442 330 48 19 chr6 14994248 14994458 -134522579 + ID_B1 SINE B4 2 217 -7 6 699 24 32 0 0 chr6 14995869 14995900 -134521137 + AT_rich Low_complexity Low_complexity 1 31 0 6 699 803 85 8 0 chr6 14996959 14997089 -134519948 + (TCTA)n Simple_repeat Simple_repeat 4 134 0 6 699 297 0 0 0 chr6 14997946 14997979 -134519058 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 699 338 309 106 42 chr6 14998714 14999072 -134517965 + Charlie7 DNA MER1_type 1760 2140 -472 6 699 1175 260 117 9 chr6 14999654 14999988 -134517049 - ORR1D1 LTR MaLR -4 370 1 6 699 509 303 134 16 chr6 15000262 15000822 -134516215 + L1M3 LINE L1 3738 4363 -1777 1 699 390 371 15 44 chr6 15000831 15001034 -134516003 + B3A SINE B2 2 198 0 2 699 345 306 148 44 chr6 15001778 15002044 -134514993 + L1M3 LINE L1 5304 5601 -567 1 699 2016 110 38 47 chr6 15002044 15002388 -134514649 - Lx2 LINE L1 0 6997 6657 3 699 345 306 148 44 chr6 15002388 15002534 -134514503 + L1M3 LINE L1 5602 5759 -409 1 699 386 150 20 0 chr6 15002732 15002832 -134514205 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 4 699 371 263 8 0 chr6 15003167 15003285 -134513752 + (TA)n Simple_repeat Simple_repeat 2 120 0 5 699 262 260 55 80 chr6 15003340 15003503 -134513534 + Charlie7 DNA MER1_type 2451 2609 -3 6 699 3972 71 0 0 chr6 15004138 15004648 -134512389 - L1Md_F2 LINE L1 -255 6327 5818 7 699 1602 86 40 20 chr6 15004648 15004896 -134512141 + L1Md_F2 LINE L1 6329 6581 -1 7 699 3236 14 0 0 chr6 15005002 15005372 -134511665 + L1Md_T LINE L1 5217 5586 -297 8 699 8974 5 0 0 chr6 15005372 15006413 -134510624 + L1Md_T LINE L1 5587 6582 0 8 699 1434 188 14 17 chr6 15006621 15006914 -134510123 - Lx2 LINE L1 -191 6806 6515 9 699 1529 294 54 39 chr6 15007217 15008361 -134508676 + L1MA6 LINE L1 4914 6105 -195 1 699 1497 78 37 110 chr6 15008541 15008814 -134508223 + L1_Mus2 LINE L1 6314 6566 0 1 699 522 286 64 19 chr6 15009157 15009314 -134507723 + RSINE1 SINE B4 2 165 0 1 699 973 282 62 21 chr6 15011233 15011570 -134505467 - Lx8 LINE L1 -555 6918 6568 1 699 536 352 109 22 chr6 15011581 15011892 -134505145 + Lx8 LINE L1 6963 7300 -173 1 699 186 89 65 22 chr6 15012297 15012343 -134504694 + GA-rich Low_complexity Low_complexity 2 49 0 1 699 264 143 0 0 chr6 15012831 15012887 -134504150 + (A)n Simple_repeat Simple_repeat 1 56 0 1 699 284 319 92 29 chr6 15013758 15013997 -134503040 - L1MC3 LINE L1 -33 7752 7499 1 699 1629 184 61 51 chr6 15014256 15014650 -134502387 - RMER10B LTR ERVL 0 398 1 1 699 530 176 24 12 chr6 15014843 15015010 -134502027 + Lx9 LINE L1 7475 7643 -1 1 699 335 132 0 14 chr6 15016110 15016179 -134500858 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 699 746 360 53 29 chr6 15016931 15017272 -134499765 - MTE2a LTR MaLR -18 361 13 2 699 718 289 176 6 chr6 15017288 15017612 -134499425 + MTE2b LTR MaLR 1 379 0 2 699 5141 204 68 15 chr6 15020167 15021341 -134495696 - Lx3C LINE L1 -4 6972 5737 2 699 200 333 78 62 chr6 15021604 15021732 -134495305 + MIRb SINE MIR 132 261 -7 2 699 232 295 164 0 chr6 15021803 15021925 -134495112 + MER3 DNA MER1_type 29 170 -39 2 699 348 217 0 0 chr6 15023519 15023602 -134493435 - Lx9 LINE L1 -8 7636 7554 2 699 701 235 7 0 chr6 15023595 15023748 -134493289 + Lx9 LINE L1 6577 6730 -914 2 699 183 42 0 0 chr6 15024262 15024286 -134492751 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2 699 558 208 67 134 chr6 15024944 15025043 -134491994 + ORR1D-int LTR MaLR 217 310 -1060 2 699 1106 43 14 0 chr6 15025043 15025183 -134491854 + B1_Mur4 SINE Alu 2 143 -7 3 699 213 39 0 0 chr6 15025186 15025212 -134491825 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 699 558 208 67 134 chr6 15025212 15025302 -134491735 + ORR1D-int LTR MaLR 311 397 -973 2 699 1141 287 109 52 chr6 15025303 15026750 -134490287 - L1MCa LINE L1 -538 5970 4446 3 699 324 312 25 12 chr6 15026752 15026914 -134490123 - L1MCa LINE L1 -4381 2127 1964 3 699 514 281 129 47 chr6 15027025 15027336 -134489701 + RLTR9A LTR ERVK 1 385 -24 3 699 28 29 0 0 chr6 15028997 15029032 -134488005 + AT_rich Low_complexity Low_complexity 1 35 0 3 699 1718 214 65 0 chr6 15029077 15029447 -134487590 - ORR1B1 LTR MaLR 0 394 1 3 699 1366 242 23 3 chr6 15030158 15030461 -134486576 - Lx6 LINE L1 -4 7456 7148 3 699 2862 91 122 5 chr6 15030466 15030909 -134486128 - L1_Mus3 LINE L1 -7 6631 6137 3 699 282 29 0 0 chr6 15030909 15030943 -134486094 + L1_Mus3 LINE L1 6038 6071 -567 3 699 369 0 0 0 chr6 15031101 15031142 -134485895 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 699 199 71 48 0 chr6 15031657 15031699 -134485338 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 699 22 0 0 0 chr6 15031935 15031957 -134485080 + AT_rich Low_complexity Low_complexity 1 22 0 4 699 244 355 36 9 chr6 15031998 15032109 -134484928 - L2a LINE L2 0 3426 3313 4 699 2285 213 16 24 chr6 15032378 15032869 -134484168 - RLTR20B1 LTR ERVK -51 512 26 4 699 22 35 0 0 chr6 15033033 15033062 -134483975 + AT_rich Low_complexity Low_complexity 1 29 0 4 699 30 27 0 0 chr6 15033636 15033673 -134483364 + AT_rich Low_complexity Low_complexity 1 37 0 4 699 22 56 0 0 chr6 15033835 15033871 -134483166 + AT_rich Low_complexity Low_complexity 1 36 0 4 699 29 28 0 0 chr6 15034171 15034207 -134482830 + AT_rich Low_complexity Low_complexity 1 36 0 4 699 186 43 0 0 chr6 15034960 15034983 -134482054 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 699 1278 222 139 29 chr6 15035478 15035895 -134481142 - MTC-int LTR MaLR -18 1240 778 4 699 800 223 156 18 chr6 15035891 15036115 -134480922 - MTC LTR MaLR -135 286 32 4 699 3565 37 7 2 chr6 15036125 15036561 -134480476 - L1_Mus1 LINE L1 0 6567 6130 4 699 224 79 53 0 chr6 15036695 15036733 -134480304 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5 699 470 251 18 34 chr6 15038203 15038325 -134478712 + B1F SINE Alu 1 118 -31 5 699 798 89 0 0 chr6 15039366 15039478 -134477559 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 5 699 27 62 0 0 chr6 15039621 15039669 -134477368 + AT_rich Low_complexity Low_complexity 1 48 0 5 699 22 0 0 0 chr6 15040102 15040124 -134476913 + AT_rich Low_complexity Low_complexity 1 22 0 5 699 634 231 26 33 chr6 15041250 15041402 -134475635 + ORR1D1 LTR MaLR 1 151 -223 5 699 1145 76 0 0 chr6 15042018 15042163 -134474874 - B1_Mm SINE Alu 0 147 3 5 699 214 309 74 62 chr6 15042444 15042620 -134474417 - MIR SINE MIR -45 217 40 5 699 239 311 28 0 chr6 15044209 15044315 -134472722 - Lx8 LINE L1 -12 7461 7353 5 699 21 89 0 0 chr6 15045644 15045700 -134471337 + AT_rich Low_complexity Low_complexity 1 56 0 5 699 539 332 19 0 chr6 15045968 15046176 -134470861 - B3 SINE B2 -4 212 1 6 699 246 128 0 0 chr6 15047291 15047330 -134469707 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 699 267 405 51 63 chr6 15047655 15047892 -134469145 - LTR40a LTR ERVL -88 431 198 6 699 32 26 0 0 chr6 15048398 15048437 -134468600 + AT_rich Low_complexity Low_complexity 1 39 0 6 699 247 319 40 40 chr6 15049231 15049355 -134467682 - MIRc SINE MIR -121 147 24 6 699 22 0 0 0 chr6 15049488 15049510 -134467527 + AT_rich Low_complexity Low_complexity 1 22 0 6 699 270 300 108 9 chr6 15049669 15049780 -134467257 + Lx8 LINE L1 7043 7164 -309 6 699 483 329 61 7 chr6 15049828 15049975 -134467062 + RSINE1 SINE B4 7 161 -4 6 699 372 138 0 0 chr6 15050019 15050084 -134466953 + (TGGA)n Simple_repeat Simple_repeat 3 67 0 6 699 990 94 6 12 chr6 15050085 15050257 -134466780 + (TAGA)n Simple_repeat Simple_repeat 1 171 0 6 699 525 300 20 45 chr6 15051574 15051773 -134465264 + B3A SINE B2 1 194 -4 7 699 465 290 82 5 chr6 15051796 15051945 -134465092 + B3 SINE B2 5 163 -53 7 699 333 0 0 0 chr6 15051945 15051982 -134465055 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 699 465 290 82 5 chr6 15051982 15052016 -134465021 + B3 SINE B2 164 201 -15 7 699 183 156 0 0 chr6 15052044 15052076 -134464961 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 7 699 437 101 127 0 chr6 15052076 15052155 -134464882 - Lx3A LINE L1 -11 6970 6882 7 699 781 79 0 0 chr6 15052155 15052256 -134464781 + Lx3_Mus LINE L1 6515 6615 -394 7 699 314 280 54 34 chr6 15052288 15052418 -134464619 + PB1D7 SINE Alu 23 148 -1 7 699 461 289 26 0 chr6 15052729 15052885 -134464152 - Lx9 LINE L1 -227 7417 7258 7 699 232 191 29 0 chr6 15052887 15052955 -134464082 + Lx9 LINE L1 7423 7492 -152 7 699 1650 197 52 105 chr6 15053029 15053505 -134463532 - RMER6B LTR ERVK -5 456 6 7 699 242 284 11 11 chr6 15053517 15053606 -134463431 + Lx9 LINE L1 7548 7636 -8 7 699 353 22 22 0 chr6 15053888 15053934 -134463103 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 7 699 325 260 48 29 chr6 15054026 15054129 -134462908 - Lx8 LINE L1 -223 7250 7146 8 699 27 0 0 0 chr6 15054170 15054197 -134462840 + AT_rich Low_complexity Low_complexity 1 27 0 8 699 254 87 0 21 chr6 15055434 15055481 -134461556 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 8 699 576 29 0 0 chr6 15055518 15055588 -134461449 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 699 2584 84 3 0 chr6 15055936 15056292 -134460745 - L1_Mus1 LINE L1 0 6567 6211 8 699 709 61 264 7 chr6 15056296 15056440 -134460597 - L1Md_F3 LINE L1 -14 6570 6390 8 699 3362 55 2 0 chr6 15056442 15056900 -134460137 + L1Md_F2 LINE L1 5550 6008 -574 8 699 5130 30 3 5 chr6 15056988 15057599 -134459438 - L1Md_F3 LINE L1 -1 6583 5974 8 699 22 0 0 0 chr6 15057723 15057745 -134459292 + AT_rich Low_complexity Low_complexity 1 22 0 8 699 516 68 0 0 chr6 15058329 15058402 -134458635 + (TTTA)n Simple_repeat Simple_repeat 1 73 0 8 699 457 362 0 26 chr6 15058749 15058902 -134458135 - L4 LINE RTE -581 1448 1300 9 699 264 276 116 19 chr6 15059242 15059397 -134457640 - RLTR21 LTR ERVK -321 1251 1082 9 699 268 56 0 0 chr6 15059399 15059435 -134457602 - Lx3A LINE L1 -13 6968 6933 9 699 21 0 0 0 chr6 15059987 15060008 -134457029 + AT_rich Low_complexity Low_complexity 1 21 0 9 699 216 111 0 0 chr6 15060082 15060118 -134456919 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 9 699 308 350 92 56 chr6 15060556 15060817 -134456220 + ORR1E LTR MaLR 13 272 -98 9 699 500 311 34 56 chr6 15060903 15061170 -134455867 + ORR1E-int LTR MaLR 2 303 -1277 9 699 654 210 3 0 chr6 15061195 15061323 -134455714 + B1_Mm SINE Alu 10 139 -10 9 699 468 0 0 0 chr6 15061323 15061375 -134455662 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 9 699 232 333 84 56 chr6 15061672 15061684 -134455353 + ID_B1 SINE B4 78 163 -61 9 699 265 306 112 32 chr6 15061684 15061809 -134455228 + B1F SINE Alu 9 143 -6 9 699 1206 287 31 65 chr6 15062816 15063023 -134454014 - ORR1A4 LTR MaLR 0 374 165 1 699 194 57 0 54 chr6 15063023 15063060 -134453977 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1 699 1206 287 31 65 chr6 15063060 15063084 -134453953 - ORR1A4 LTR MaLR -210 164 149 1 699 974 209 75 19 chr6 15063084 15063298 -134453739 - URR1A DNA MER1_type 0 226 1 1 699 1206 287 31 65 chr6 15063298 15063452 -134453585 - ORR1A4 LTR MaLR -226 148 1 1 699 3009 282 105 33 chr6 15063452 15064639 -134452398 - ORR1A4-int LTR MaLR -53 1527 109 1 699 1563 170 11 110 chr6 15064629 15064985 -134452052 - ORR1A4 LTR MaLR -8 321 1 1 699 414 275 18 0 chr6 15064985 15065090 -134451947 - ORR1A4-int LTR MaLR -1262 108 2 1 699 462 303 68 71 chr6 15065497 15065518 -134451519 + CYRA11_Mm Unknown Y-chromosome 149 222 -395 1 699 1233 176 28 0 chr6 15065518 15065734 -134451303 - URR1A DNA MER1_type -3 223 2 1 699 462 303 68 71 chr6 15065734 15065792 -134451245 + CYRA11_Mm Unknown Y-chromosome 223 442 -175 1 699 25 51 0 0 chr6 15065850 15065889 -134451148 + AT_rich Low_complexity Low_complexity 1 39 0 1 699 3297 36 5 5 chr6 15065918 15066314 -134450723 + MTA_Mm LTR MaLR 1 396 0 1 699 517 271 125 0 chr6 15068119 15068311 -134448726 + B3 SINE B2 1 216 0 1 699 4756 58 2 5 chr6 15068724 15069331 -134447706 - L1Md_F2 LINE L1 -12 6570 5966 1 699 396 0 0 0 chr6 15069792 15069836 -134447201 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 699 886 109 0 74 chr6 15069936 15070084 -134446953 - B1_Mus2 SINE Alu -5 142 6 1 699 216 0 0 0 chr6 15072129 15072153 -134444884 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 699 330 193 12 30 chr6 15072186 15072362 -134444675 + (TA)n Simple_repeat Simple_repeat 1 172 0 1 700 30 59 0 0 chr6 15074233 15074284 -134442753 + AT_rich Low_complexity Low_complexity 1 51 0 1 700 23 0 0 0 chr6 15075110 15075133 -134441904 + AT_rich Low_complexity Low_complexity 1 23 0 1 700 252 59 0 0 chr6 15075496 15075530 -134441507 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 700 602 175 11 11 chr6 15075548 15075727 -134441310 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 700 277 186 65 0 chr6 15076896 15077020 -134440017 + (TA)n Simple_repeat Simple_repeat 2 133 0 1 700 360 0 0 0 chr6 15078010 15078050 -134438987 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 700 264 100 0 0 chr6 15078145 15078185 -134438852 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 700 345 323 83 15 chr6 15078199 15078331 -134438706 - B3A SINE B2 -55 143 3 1 700 462 107 29 19 chr6 15079184 15079289 -134437748 + (TAGA)n Simple_repeat Simple_repeat 1 106 0 1 700 318 215 0 0 chr6 15079272 15079351 -134437686 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 700 205 208 0 20 chr6 15079355 15079404 -134437633 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 1 700 27 29 0 0 chr6 15082744 15082778 -134434259 + AT_rich Low_complexity Low_complexity 1 34 0 1 700 22 56 0 0 chr6 15085245 15085281 -134431756 + AT_rich Low_complexity Low_complexity 1 36 0 1 700 676 225 43 24 chr6 15086201 15086365 -134430672 + B2_Mm2 SINE B2 10 176 -19 1 700 189 107 0 0 chr6 15086388 15086416 -134430621 + (CG)n Simple_repeat Simple_repeat 2 29 0 1 700 306 0 0 0 chr6 15086416 15086449 -134430588 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 700 366 23 0 0 chr6 15086449 15086491 -134430546 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 700 495 0 0 0 chr6 15086997 15087052 -134429985 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 700 24 53 0 0 chr6 15088098 15088136 -134428901 + AT_rich Low_complexity Low_complexity 1 38 0 1 700 2931 75 20 12 chr6 15088705 15089110 -134427927 - L1_Mus1 LINE L1 -2 6565 6158 1 700 296 24 0 24 chr6 15089111 15089153 -134427884 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 1 700 1096 50 7 0 chr6 15089153 15089293 -134427744 - B1_Mus1 SINE Alu 0 148 8 1 700 26 0 0 0 chr6 15089676 15089702 -134427335 + AT_rich Low_complexity Low_complexity 1 26 0 1 700 652 159 0 11 chr6 15089961 15090139 -134426898 + GA-rich Low_complexity Low_complexity 1 176 0 1 700 221 295 127 21 chr6 15090959 15091101 -134425936 + L3 LINE CR1 3477 3633 -856 1 700 721 302 28 36 chr6 15092147 15092398 -134424639 + MamSINE1 SINE tRNA 2 250 -40 1 700 297 0 0 0 chr6 15094376 15094409 -134422628 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 700 214 338 14 0 chr6 15094469 15094543 -134422494 + GA-rich Low_complexity Low_complexity 3 77 0 1 700 1068 208 26 29 chr6 15095095 15095368 -134421669 + Lx4B LINE L1 6747 7018 -40 1 700 4453 96 40 29 chr6 15095409 15095448 -134421589 - L1_Mus3 LINE L1 0 6638 6606 1 700 2907 66 0 0 chr6 15095448 15095825 -134421212 - L1Md_T LINE L1 0 6582 6206 1 700 4453 96 40 29 chr6 15095825 15096469 -134420568 - L1_Mus3 LINE L1 -33 6605 5948 1 700 34 0 0 0 chr6 15097244 15097278 -134419759 + AT_rich Low_complexity Low_complexity 1 34 0 1 700 379 254 14 0 chr6 15097473 15097544 -134419493 + ID SINE ID 3 74 -150 1 700 401 36 0 18 chr6 15097546 15097602 -134419435 + (TAA)n Simple_repeat Simple_repeat 3 57 0 1 700 414 346 44 25 chr6 15098048 15098208 -134418829 - MLT1G1 LTR MaLR -10 569 407 1 700 398 226 52 120 chr6 15098467 15098658 -134418379 + Lx4B LINE L1 6881 7058 0 1 700 299 274 47 105 chr6 15099022 15099193 -134417844 - RMER1C Other Other -16 1326 1166 1 700 243 291 144 82 chr6 15099030 15099273 -134417764 - Lx8 LINE L1 -2 7471 7214 1 700 379 52 35 0 chr6 15099274 15099332 -134417705 + (CCCCCT)n Simple_repeat Simple_repeat 3 62 0 1 700 2348 309 58 38 chr6 15099332 15100452 -134416585 - Lx8 LINE L1 -247 7226 6085 1 700 307 232 29 0 chr6 15100526 15100595 -134416442 + Lx7 LINE L1 7130 7200 -496 1 700 792 245 179 62 chr6 15100614 15100763 -134416274 + Lx7 LINE L1 7274 7423 -273 1 700 189 74 0 0 chr6 15100763 15100790 -134416247 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 700 792 245 179 62 chr6 15100790 15100829 -134416208 + Lx7 LINE L1 7424 7474 -222 1 700 279 0 0 0 chr6 15100829 15100860 -134416177 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 700 792 245 179 62 chr6 15100860 15101044 -134415993 + Lx7 LINE L1 7475 7691 -5 1 700 235 340 100 0 chr6 15102209 15102309 -134414728 - PB1D10 SINE Alu -7 110 1 1 700 4005 116 77 4 chr6 15103493 15104673 -134412364 + L1VL4 LINE L1 216 1498 -2061 1 700 799 265 24 0 chr6 15107192 15107403 -134409634 - B3 SINE B2 0 216 1 1 700 406 280 23 113 chr6 15107421 15107687 -134409350 + Lx6 LINE L1 7203 7444 -16 1 700 189 0 0 0 chr6 15108268 15108289 -134408748 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1 700 3295 157 34 0 chr6 15108289 15108849 -134408188 - Lx2 LINE L1 -7 6990 6412 1 700 449 363 7 7 chr6 15110744 15110891 -134406146 + RSINE1 SINE B4 5 151 -14 1 700 180 0 0 0 chr6 15110947 15110967 -134406070 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 700 21 0 0 0 chr6 15110976 15110997 -134406040 + AT_rich Low_complexity Low_complexity 1 21 0 1 700 376 353 58 21 chr6 15112011 15112199 -134404838 - Lx7 LINE L1 -144 7329 7129 1 700 254 109 43 0 chr6 15112218 15112264 -134404773 + (TATG)n Simple_repeat Simple_repeat 1 48 0 1 700 424 402 11 4 chr6 15112268 15112530 -134404507 - Lx7 LINE L1 -602 7094 6831 1 700 4401 88 5 0 chr6 15112529 15113110 -134403927 + L1_Mus1 LINE L1 5954 6537 -30 1 700 2351 22 0 0 chr6 15113110 15113381 -134403656 + L1Md_F2 LINE L1 6298 6568 -14 1 700 216 0 0 0 chr6 15113629 15113653 -134403384 + (A)n Simple_repeat Simple_repeat 1 24 0 1 700 1175 295 74 15 chr6 15113653 15114111 -134402926 - Lx8 LINE L1 -712 6761 6277 1 700 2284 288 5 45 chr6 15114139 15114335 -134402702 - RMER1C Other Other -29 1313 1048 1 700 5259 172 14 10 chr6 15114335 15115305 -134401732 - Lx2B LINE L1 -12 6988 6015 1 700 2284 308 10 65 chr6 15115305 15116111 -134400926 - RMER1C Other Other -295 1047 384 1 700 780 128 118 35 chr6 15116532 15116702 -134400335 + B2_Mm2 SINE B2 3 186 -9 1 700 21 36 0 0 chr6 15116844 15116872 -134400165 + AT_rich Low_complexity Low_complexity 1 28 0 1 700 21 82 0 0 chr6 15116924 15116973 -134400064 + AT_rich Low_complexity Low_complexity 1 49 0 1 700 493 359 61 21 chr6 15117181 15117460 -134399577 + B4A SINE B4 3 292 0 1 700 228 86 0 0 chr6 15117501 15117536 -134399501 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1 700 24 0 0 0 chr6 15117543 15117567 -134399470 + AT_rich Low_complexity Low_complexity 1 24 0 1 700 21 36 0 0 chr6 15117642 15117670 -134399367 + AT_rich Low_complexity Low_complexity 1 28 0 1 700 2399 313 62 42 chr6 15117675 15118887 -134398150 - Lx8 LINE L1 -10 7463 6228 1 700 680 186 0 6 chr6 15119840 15120008 -134397029 + GA-rich Low_complexity Low_complexity 2 168 0 1 700 589 330 96 10 chr6 15120205 15120496 -134396541 - MER31A LTR ERV1 -169 316 1 1 700 955 152 57 16 chr6 15120724 15120921 -134396116 - L1_Mus3 LINE L1 -77 6577 6372 1 700 228 97 0 0 chr6 15120911 15120942 -134396095 + L1_Mus3 LINE L1 6348 6378 -260 1 700 335 322 49 41 chr6 15120942 15121065 -134395972 + RSINE1 SINE B4 28 151 -14 1 700 457 297 19 0 chr6 15121744 15121899 -134395138 + Lx9 LINE L1 7275 7432 -212 1 700 662 224 7 14 chr6 15121924 15122069 -134394968 + B1_Mm SINE Alu 2 145 -2 1 700 247 238 45 9 chr6 15122446 15122527 -134394510 - PB1D9 SINE Alu 0 149 64 1 700 750 74 6 51 chr6 15122573 15122730 -134394307 + (TCTCC)n Simple_repeat Simple_repeat 2 151 0 1 700 429 20 0 0 chr6 15122750 15122800 -134394237 + (CTA)n Simple_repeat Simple_repeat 1 50 0 1 700 419 170 10 21 chr6 15122800 15122896 -134394141 - Lx2B LINE L1 -15 6985 6891 1 700 297 0 0 0 chr6 15122896 15122929 -134394108 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 700 318 309 212 68 chr6 15123381 15123554 -134393483 + B4 SINE B4 3 203 -89 1 700 1241 117 0 6 chr6 15123554 15123734 -134393303 + B2_Mm2 SINE B2 1 179 -16 1 700 909 0 0 0 chr6 15123734 15123835 -134393202 + (GAA)n Simple_repeat Simple_repeat 2 102 0 1 700 318 309 212 68 chr6 15123835 15123910 -134393127 + B4 SINE B4 204 287 -5 1 700 689 249 28 94 chr6 15124306 15124534 -134392503 - RLTR11A2 LTR ERVK -61 466 256 1 700 833 29 10 0 chr6 15124534 15124638 -134392399 + (TTC)n Simple_repeat Simple_repeat 1 105 0 1 700 689 249 28 94 chr6 15124638 15124728 -134392309 - RLTR11A2 LTR ERVK -272 255 169 1 700 342 152 0 0 chr6 15124730 15124789 -134392248 + CT-rich Low_complexity Low_complexity 1 59 0 1 700 301 372 53 13 chr6 15124789 15124939 -134392098 - HAL1-3A_ME LINE L1 -419 2439 2284 1 700 991 161 3 22 chr6 15124939 15125308 -134391729 + CT-rich Low_complexity Low_complexity 1 361 0 1 700 725 244 47 70 chr6 15125317 15125573 -134391464 - RLTR11A2 LTR ERVK -268 259 10 1 700 21 36 0 0 chr6 15126492 15126520 -134390517 + AT_rich Low_complexity Low_complexity 1 28 0 1 700 368 20 20 0 chr6 15126557 15126606 -134390431 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1 700 270 0 0 0 chr6 15127518 15127548 -134389489 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 700 23 0 0 0 chr6 15127583 15127606 -134389431 + AT_rich Low_complexity Low_complexity 1 23 0 2 700 278 317 12 22 chr6 15130110 15130201 -134386836 + MIR SINE MIR 75 170 -106 2 700 216 0 0 0 chr6 15131709 15131733 -134385304 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 700 21 82 0 0 chr6 15133306 15133355 -134383682 + AT_rich Low_complexity Low_complexity 1 49 0 2 700 848 28 9 0 chr6 15135260 15135367 -134381670 + (TC)n Simple_repeat Simple_repeat 1 108 0 2 700 261 0 0 0 chr6 15135367 15135395 -134381642 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 700 279 0 0 0 chr6 15135826 15135857 -134381180 + (T)n Simple_repeat Simple_repeat 1 31 0 2 700 251 236 0 0 chr6 15136446 15136501 -134380536 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 700 193 250 87 14 chr6 15136728 15136797 -134380240 + L3 LINE CR1 2870 2943 -1546 2 700 23 0 0 0 chr6 15144093 15144116 -134372921 + AT_rich Low_complexity Low_complexity 1 23 0 2 700 216 0 0 0 chr6 15146386 15146410 -134370627 + (A)n Simple_repeat Simple_repeat 1 24 0 2 700 285 182 0 0 chr6 15147705 15147760 -134369277 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 700 27 62 0 0 chr6 15147830 15147878 -134369159 + AT_rich Low_complexity Low_complexity 1 48 0 2 700 21 57 0 0 chr6 15148269 15148304 -134368733 + AT_rich Low_complexity Low_complexity 1 35 0 2 700 22 0 0 0 chr6 15154075 15154097 -134362940 + AT_rich Low_complexity Low_complexity 1 22 0 2 700 744 200 0 0 chr6 15154123 15154288 -134362749 + (TA)n Simple_repeat Simple_repeat 2 166 0 2 700 414 0 0 0 chr6 15154359 15154405 -134362632 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 700 511 344 16 105 chr6 15155897 15156212 -134360825 - B4A SINE B4 0 292 6 2 700 363 137 0 0 chr6 15156465 15156538 -134360499 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 700 277 283 32 89 chr6 15157352 15157476 -134359561 - L2a LINE L2 0 3426 3310 2 700 372 138 45 23 chr6 15157650 15157783 -134359254 + (TA)n Simple_repeat Simple_repeat 2 137 0 2 700 234 0 0 0 chr6 15158049 15158075 -134358962 + (T)n Simple_repeat Simple_repeat 1 26 0 2 700 642 26 0 0 chr6 15158631 15158707 -134358330 + (TA)n Simple_repeat Simple_repeat 1 76 0 2 700 22 0 0 0 chr6 15160935 15160957 -134356080 + AT_rich Low_complexity Low_complexity 1 22 0 2 700 346 312 21 0 chr6 15161249 15161345 -134355692 + RSINE1 SINE B4 54 151 -14 2 700 339 130 0 0 chr6 15161946 15162000 -134355037 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 700 29 28 0 0 chr6 15162857 15162893 -134354144 + AT_rich Low_complexity Low_complexity 1 36 0 2 700 26 0 0 0 chr6 15163074 15163100 -134353937 + AT_rich Low_complexity Low_complexity 1 26 0 2 700 201 167 0 23 chr6 15164188 15164231 -134352806 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 2 700 193 341 84 12 chr6 15164576 15164659 -134352378 + L2 LINE L2 2790 2878 -541 2 700 371 21 21 0 chr6 15167141 15167189 -134349848 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 700 342 0 0 0 chr6 15168439 15168477 -134348560 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 700 312 70 0 0 chr6 15169184 15169227 -134347810 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 2 700 238 26 51 0 chr6 15169421 15169460 -134347577 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 700 1925 224 72 16 chr6 15169591 15170091 -134346946 + Lx9 LINE L1 7098 7625 -19 2 700 2749 214 50 28 chr6 15170404 15171039 -134345998 - Lx5 LINE L1 0 7050 6402 2 700 23 33 0 0 chr6 15171109 15171139 -134345898 + AT_rich Low_complexity Low_complexity 1 30 0 2 700 2779 153 130 97 chr6 15171800 15172468 -134344569 - RMER6C LTR ERVK 0 690 1 2 700 188 294 0 0 chr6 15172637 15172688 -134344349 - L2b LINE L2 0 3375 3325 2 700 429 66 0 0 chr6 15174011 15174072 -134342965 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 700 385 289 7 27 chr6 15174465 15174611 -134342426 + CT-rich Low_complexity Low_complexity 1 143 0 2 700 247 261 0 97 chr6 15174620 15174692 -134342345 - Lx8 LINE L1 -155 7318 7254 2 700 21 0 0 0 chr6 15175039 15175060 -134341977 + AT_rich Low_complexity Low_complexity 1 21 0 2 700 203 171 0 0 chr6 15175836 15175877 -134341160 + T-rich Low_complexity Low_complexity 1 41 0 2 700 297 0 0 0 chr6 15176612 15176645 -134340392 + (CAT)n Simple_repeat Simple_repeat 1 33 0 2 700 265 265 126 48 chr6 15177154 15177257 -134339780 - RMER15 LTR ERVL -70 505 395 2 700 378 264 28 28 chr6 15177294 15177403 -134339634 + ORR1D2 LTR MaLR 1 109 -261 2 700 340 213 53 0 chr6 15177601 15177676 -134339361 + ORR1D2 LTR MaLR 292 370 0 2 700 288 0 0 0 chr6 15177954 15177986 -134339051 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 700 285 118 0 0 chr6 15178919 15178970 -134338067 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 700 360 143 11 42 chr6 15180132 15180227 -134336810 + C-rich Low_complexity Low_complexity 2 93 0 2 700 459 368 71 24 chr6 15180512 15180765 -134336272 - B4A SINE B4 -8 284 20 2 700 516 158 0 0 chr6 15181574 15181669 -134335368 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 700 318 376 26 11 chr6 15184679 15184870 -134332167 - B3A SINE B2 -3 195 2 2 700 374 240 86 23 chr6 15185260 15185435 -134331602 + RCHARR1 DNA MER1_type 789 974 0 2 700 1272 91 43 0 chr6 15185439 15185626 -134331411 + L1_Mus2 LINE L1 6368 6562 -4 2 700 783 89 186 0 chr6 15185659 15185783 -134331254 - B1_Mm SINE Alu 0 147 1 2 700 324 0 0 0 chr6 15185815 15185851 -134331186 + (A)n Simple_repeat Simple_repeat 1 36 0 2 700 500 264 50 7 chr6 15187088 15187229 -134329808 + B1_Mur2 SINE Alu 3 149 0 2 700 367 262 38 0 chr6 15187820 15187900 -134329137 - MER58A DNA MER1_type -113 111 29 2 700 21 57 0 0 chr6 15188970 15189005 -134328032 + AT_rich Low_complexity Low_complexity 1 35 0 2 700 210 171 0 0 chr6 15189471 15189512 -134327525 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 700 199 382 68 34 chr6 15190003 15190209 -134326828 - MIR SINE MIR -44 218 6 2 700 189 0 0 0 chr6 15190267 15190288 -134326749 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 700 390 155 8 134 chr6 15190366 15190500 -134326537 + Lx LINE L1 6538 6654 0 2 700 247 192 112 28 chr6 15190616 15190723 -134326314 + Lx9 LINE L1 6142 6257 -1387 2 700 1661 330 62 34 chr6 15190731 15191592 -134325445 + Lx9 LINE L1 6381 7265 -379 2 700 314 325 39 47 chr6 15191592 15191721 -134325316 - RSINE1 SINE B4 -25 140 13 2 700 22 35 0 0 chr6 15191885 15191914 -134325123 + AT_rich Low_complexity Low_complexity 1 29 0 2 700 295 140 0 66 chr6 15194185 15194246 -134322791 + Tigger5 DNA MER2_type 2148 2204 -202 2 700 22 0 0 0 chr6 15195669 15195691 -134321346 + AT_rich Low_complexity Low_complexity 1 22 0 2 700 189 0 0 0 chr6 15196233 15196254 -134320783 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 700 3587 106 36 2 chr6 15196337 15196869 -134320168 + Lx LINE L1 6090 6639 -15 2 700 377 275 117 0 chr6 15198327 15198498 -134318539 + L1MC1 LINE L1 6106 6296 -37 2 700 233 312 41 20 chr6 15198540 15198638 -134318399 + ID_B1 SINE B4 117 216 -8 2 700 245 329 0 50 chr6 15198652 15198732 -134318305 + ID4_ SINE ID 5 80 -3 2 700 21 0 0 0 chr6 15198760 15198781 -134318256 + AT_rich Low_complexity Low_complexity 1 21 0 2 700 290 241 7 0 chr6 15198781 15198926 -134318111 + (CA)n Simple_repeat Simple_repeat 2 147 0 2 700 277 144 0 46 chr6 15201315 15201402 -134315635 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 2 700 201 154 0 0 chr6 15201530 15201569 -134315468 + A-rich Low_complexity Low_complexity 1 39 0 2 700 234 246 0 0 chr6 15201634 15201695 -134315342 + (CATA)n Simple_repeat Simple_repeat 3 63 0 2 700 321 203 47 0 chr6 15202460 15202524 -134314513 - PB1D10 SINE Alu -5 112 46 2 700 300 161 0 0 chr6 15202554 15202635 -134314402 + CT-rich Low_complexity Low_complexity 2 82 0 2 700 724 133 23 0 chr6 15202632 15202805 -134314232 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 2 700 261 0 0 0 chr6 15202884 15202913 -134314124 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 700 1451 212 20 10 chr6 15203137 15203442 -134313595 + Lx9 LINE L1 7177 7484 -160 2 700 691 214 36 0 chr6 15203632 15203772 -134313265 + B1_Mus1 SINE Alu 2 146 -2 2 700 24 67 0 0 chr6 15203818 15203863 -134313174 + AT_rich Low_complexity Low_complexity 1 45 0 2 87 193 200 140 100 chr6 15204335 15204435 -134312602 - MIRc SINE MIR -140 128 25 2 701 190 286 224 19 chr6 15204385 15204492 -134312545 + MER5A DNA MER1_type 61 189 0 2 701 427 0 34 17 chr6 15205105 15205164 -134311873 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 2 701 379 261 33 0 chr6 15205217 15205309 -134311728 + PB1D10 SINE Alu 10 104 -13 2 701 21 57 0 0 chr6 15205460 15205495 -134311542 + AT_rich Low_complexity Low_complexity 1 35 0 2 701 507 73 0 0 chr6 15208787 15208855 -134308182 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 701 22 35 0 0 chr6 15208865 15208894 -134308143 + AT_rich Low_complexity Low_complexity 1 29 0 2 701 725 184 148 64 chr6 15210170 15210420 -134306617 + MamRep434 DNA TcMar 109 379 -47 2 701 233 0 62 0 chr6 15210671 15210703 -134306334 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 701 2773 59 0 0 chr6 15210928 15211283 -134305754 - L1Md_F2 LINE L1 -1 6581 6227 2 701 405 0 0 0 chr6 15212069 15212114 -134304923 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 701 4711 119 55 0 chr6 15212265 15212990 -134304047 - Lx LINE L1 -6 6648 5884 2 701 228 297 13 13 chr6 15213861 15213936 -134303101 - MLT1L LTR MaLR -534 76 2 2 701 410 348 64 61 chr6 15213985 15214297 -134302740 - L2c LINE L2 -3 3384 3072 3 701 216 395 61 9 chr6 15214352 15214467 -134302570 - L2b LINE L2 -3 3372 3252 3 701 1084 153 9 43 chr6 15214868 15215110 -134301927 + Lx3B LINE L1 6737 6976 0 3 701 277 275 0 28 chr6 15215112 15215183 -134301854 + polypurine Low_complexity Low_complexity 5 73 0 3 701 1236 42 0 18 chr6 15215184 15215354 -134301683 + (GAAAA)n Simple_repeat Simple_repeat 1 167 0 3 701 187 314 208 7 chr6 15216176 15216330 -134300707 - L2c LINE L2 -554 2865 2681 3 701 313 311 46 80 chr6 15218207 15218382 -134298655 - Tigger16a DNA Tigger -4 929 761 3 701 23 33 0 0 chr6 15218936 15218966 -134298071 + AT_rich Low_complexity Low_complexity 1 30 0 3 701 290 310 10 29 chr6 15219074 15219177 -134297860 + MER5B DNA MER1_type 29 129 -49 3 701 4571 236 49 12 chr6 15219468 15220670 -134296367 - Lx2B LINE L1 -1 6999 5753 3 701 414 0 0 0 chr6 15222663 15222709 -134294328 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 701 459 0 0 0 chr6 15222712 15222763 -134294274 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 3 701 1027 54 0 0 chr6 15222768 15222898 -134294139 - B1_Mus1 SINE Alu -5 143 14 3 701 507 350 7 7 chr6 15222945 15223086 -134293951 + RSINE1 SINE B4 4 144 -21 3 701 390 122 67 0 chr6 15223109 15223199 -134293838 + (CATATA)n Simple_repeat Simple_repeat 5 100 0 3 701 21 57 0 0 chr6 15223203 15223238 -134293799 + AT_rich Low_complexity Low_complexity 1 35 0 3 701 375 78 0 0 chr6 15224083 15224134 -134292903 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 3 701 406 302 56 21 chr6 15224135 15224277 -134292760 - B3A SINE B2 -44 154 8 3 701 210 37 0 0 chr6 15225510 15225537 -134291500 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 701 576 0 0 0 chr6 15226321 15226385 -134290652 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 3 701 1233 61 19 75 chr6 15226547 15226761 -134290276 - L1_Mus3 LINE L1 0 6638 6437 3 701 841 284 61 28 chr6 15229158 15229824 -134287213 - L1MA6 LINE L1 -296 5888 5279 3 701 255 280 13 0 chr6 15229825 15229900 -134287137 - L1MA6 LINE L1 -1275 4868 4793 3 701 699 236 118 0 chr6 15230631 15230809 -134286228 + B3 SINE B2 1 199 -17 3 701 28 29 0 0 chr6 15231661 15231696 -134285341 + AT_rich Low_complexity Low_complexity 1 35 0 3 701 195 325 61 38 chr6 15234584 15234715 -134282322 + MIR3 SINE MIR 75 208 0 3 701 383 83 0 16 chr6 15234768 15234829 -134282208 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 701 188 179 26 0 chr6 15236422 15236461 -134280576 + L2 LINE L2 2074 2113 -1306 3 701 198 0 0 0 chr6 15238392 15238414 -134278623 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 3 701 22 0 0 0 chr6 15239249 15239271 -134277766 + AT_rich Low_complexity Low_complexity 1 22 0 3 701 21 0 0 0 chr6 15240124 15240145 -134276892 + AT_rich Low_complexity Low_complexity 1 21 0 3 701 28 0 0 0 chr6 15240391 15240419 -134276618 + AT_rich Low_complexity Low_complexity 1 28 0 3 701 22 35 0 0 chr6 15240481 15240510 -134276527 + AT_rich Low_complexity Low_complexity 1 29 0 3 701 23 0 0 0 chr6 15240956 15240979 -134276058 + AT_rich Low_complexity Low_complexity 1 23 0 3 701 1105 293 27 43 chr6 15242018 15242435 -134274602 + MTE2b LTR MaLR 2 379 0 3 701 209 222 16 0 chr6 15242863 15242926 -134274111 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 701 355 293 172 0 chr6 15243172 15243288 -134273749 + B3A SINE B2 1 136 -62 3 701 716 184 0 7 chr6 15245931 15246079 -134270958 + CT-rich Low_complexity Low_complexity 3 149 0 3 701 717 280 21 0 chr6 15246921 15247114 -134269923 - ID_B1 SINE B4 -23 201 5 3 701 1086 34 20 0 chr6 15247380 15247527 -134269510 + (TAGA)n Simple_repeat Simple_repeat 3 152 0 3 701 261 57 0 0 chr6 15247781 15247816 -134269221 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 701 441 0 0 0 chr6 15250011 15250060 -134266977 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 701 513 32 0 0 chr6 15251631 15251694 -134265343 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 701 189 74 0 0 chr6 15251695 15251722 -134265315 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 701 431 285 34 97 chr6 15252584 15252615 -134264422 - B2_Mm2 SINE B2 -2 193 163 3 701 339 105 0 0 chr6 15252615 15252672 -134264365 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 701 587 285 34 97 chr6 15252672 15252846 -134264191 - B3A SINE B2 -26 172 1 3 701 25 31 0 0 chr6 15253900 15253932 -134263105 + AT_rich Low_complexity Low_complexity 1 32 0 3 701 281 331 64 57 chr6 15256092 15256233 -134260804 - MIRb SINE MIR -115 153 8 3 701 2669 254 33 127 chr6 15256398 15257471 -134259566 - RMER1B Other Other -1 1065 94 3 701 384 332 68 64 chr6 15259195 15259430 -134257607 - B4A SINE B4 -56 236 1 3 701 2157 88 11 55 chr6 15259708 15260069 -134256968 - Lx LINE L1 -4 6650 6306 3 701 438 20 0 0 chr6 15260593 15260644 -134256393 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 701 318 26 0 0 chr6 15260644 15260682 -134256355 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 701 471 304 68 47 chr6 15260892 15261082 -134255955 - LFSINE_Vert SINE SINE -116 343 150 3 701 219 318 83 9 chr6 15261330 15261438 -134255599 + B1_Mur1 SINE Alu 25 140 -9 3 701 216 170 0 70 chr6 15261438 15261495 -134255542 + A-rich Low_complexity Low_complexity 1 53 0 3 701 338 303 106 40 chr6 15261507 15261658 -134255379 + RSINE1 SINE B4 5 165 0 3 701 216 0 0 0 chr6 15261658 15261682 -134255355 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 701 3681 123 41 32 chr6 15262799 15263430 -134253607 - Lx3C LINE L1 -7 6969 6333 3 701 286 290 46 18 chr6 15263624 15263733 -134253304 - B1_Mus1 SINE Alu -22 126 15 3 701 21 0 0 0 chr6 15264476 15264497 -134252540 + AT_rich Low_complexity Low_complexity 1 21 0 3 701 2103 203 39 7 chr6 15264580 15265037 -134252000 - Lx3C LINE L1 -3 6973 6502 3 701 23 0 0 0 chr6 15265585 15265608 -134251429 + AT_rich Low_complexity Low_complexity 1 23 0 3 701 2651 234 76 57 chr6 15265611 15266371 -134250666 - Lx6 LINE L1 -4 7456 6682 3 701 878 182 13 0 chr6 15266402 15266561 -134250476 - L1_Mur3 LINE L1 -105 5775 5615 3 701 432 355 0 16 chr6 15266641 15266764 -134250273 - B1F SINE Alu -1 148 28 3 701 457 335 18 60 chr6 15267529 15267697 -134249340 + RSINE1 SINE B4 5 165 0 3 701 255 290 0 0 chr6 15267823 15267885 -134249152 + Charlie4a DNA MER1_type 8 69 -439 3 701 1207 285 5 65 chr6 15267942 15268313 -134248724 - ORR1D2 LTR MaLR 0 370 22 3 701 2006 268 37 83 chr6 15268304 15269005 -134248032 - ORR1D2-int LTR MaLR -130 1240 572 3 701 276 274 46 19 chr6 15269004 15269112 -134247925 - ORR1D2-int LTR MaLR -1242 128 18 3 701 1039 304 73 0 chr6 15269142 15269445 -134247592 - ORR1D2 LTR MaLR -14 356 32 3 701 354 301 72 51 chr6 15269485 15269720 -134247317 + Charlie4a DNA MER1_type 262 501 -7 3 701 323 296 45 18 chr6 15271397 15271507 -134245530 - MIR SINE MIR -131 131 19 3 701 6124 38 8 0 chr6 15275545 15276312 -134240725 + L1_Mm LINE L1 3127 3899 -1984 3 701 24 0 0 0 chr6 15276855 15276879 -134240158 + AT_rich Low_complexity Low_complexity 1 24 0 3 701 455 165 0 9 chr6 15277059 15277169 -134239868 + (CA)n Simple_repeat Simple_repeat 2 110 0 3 701 22 56 0 0 chr6 15278166 15278202 -134238835 + AT_rich Low_complexity Low_complexity 1 36 0 3 701 243 225 180 0 chr6 15278209 15278298 -134238739 - Lx9 LINE L1 -27 7617 7513 3 701 381 162 167 48 chr6 15278296 15278380 -134238657 + L1_Rod LINE L1 5465 5558 -289 3 701 279 79 0 0 chr6 15279376 15279414 -134237623 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 701 24 85 0 0 chr6 15279774 15279833 -134237204 + AT_rich Low_complexity Low_complexity 1 59 0 3 701 382 49 16 16 chr6 15280377 15280439 -134236598 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 3 701 5464 107 2 1 chr6 15281841 15282637 -134234400 + L1_Mm LINE L1 4611 5407 -476 3 701 264 342 117 50 chr6 15283925 15284045 -134232992 + B1_Mur1 SINE Alu 2 129 -20 3 701 261 146 0 0 chr6 15284078 15284126 -134232911 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 701 528 16 0 0 chr6 15284184 15284245 -134232792 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 3 701 493 263 84 21 chr6 15284342 15284579 -134232458 - L1MC1 LINE L1 -99 6234 5983 3 701 252 55 18 53 chr6 15284590 15284647 -134232390 + (CAAAAA)n Simple_repeat Simple_repeat 1 55 0 3 701 375 255 142 90 chr6 15284929 15285084 -134231953 + B4A SINE B4 2 164 -128 3 701 276 30 0 0 chr6 15285222 15285255 -134231782 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 701 258 32 0 0 chr6 15286161 15286192 -134230845 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 3 701 392 231 32 57 chr6 15288108 15288232 -134228805 + MER5A1 DNA MER1_type 46 166 0 3 701 369 0 0 0 chr6 15288267 15288308 -134228729 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 701 2073 170 35 0 chr6 15289086 15289457 -134227580 + ORR1C2 LTR MaLR 1 384 0 3 701 379 291 10 35 chr6 15289707 15289916 -134227121 - Lx8 LINE L1 -308 7165 6968 3 701 30 27 0 0 chr6 15289992 15290029 -134227008 + AT_rich Low_complexity Low_complexity 1 37 0 3 701 240 59 0 0 chr6 15291120 15291154 -134225883 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 701 248 295 40 40 chr6 15291524 15291623 -134225414 - L2c LINE L2 0 3387 3289 3 701 266 272 36 64 chr6 15295498 15295608 -134221429 + Charlie5 DNA MER1_type 20 126 -2498 3 701 183 156 0 0 chr6 15295746 15295778 -134221259 + T-rich Low_complexity Low_complexity 1 32 0 3 701 728 102 8 8 chr6 15295791 15295910 -134221127 - Lx LINE L1 -7 6647 6529 3 701 300 313 0 0 chr6 15296939 15297022 -134220015 + PB1D10 SINE Alu 3 85 -32 3 701 2103 54 169 0 chr6 15298344 15298640 -134218397 - ORR1A1 LTR MaLR 0 346 1 3 701 419 35 18 0 chr6 15300674 15300731 -134216306 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 701 234 315 143 75 chr6 15301704 15301865 -134215172 + B4A SINE B4 10 181 -111 3 701 357 62 0 0 chr6 15301946 15301994 -134215043 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 701 1721 190 27 19 chr6 15302268 15302639 -134214398 + ORR1D1 LTR MaLR 1 374 0 4 701 21 36 0 0 chr6 15302756 15302784 -134214253 + AT_rich Low_complexity Low_complexity 1 28 0 4 701 279 323 43 0 chr6 15302817 15302910 -134214127 - L1MB2 LINE L1 -53 6118 6022 4 701 228 230 67 13 chr6 15303125 15303200 -134213837 - L1M5 LINE L1 -1895 4251 4173 4 701 485 254 54 19 chr6 15303522 15303727 -134213310 - L1M5 LINE L1 -2106 4040 3829 4 701 332 278 167 18 chr6 15303737 15304019 -134213018 - L1M5 LINE L1 -2548 3598 3275 4 701 1508 271 103 50 chr6 15304247 15305075 -134211962 - L1MC2 LINE L1 -123 6221 5350 4 701 338 349 20 0 chr6 15305523 15305641 -134211396 - PB1D10 SINE Alu -24 125 1 4 701 269 363 18 0 chr6 15306114 15306227 -134210810 - MER44B DNA MER2_type -425 125 11 4 701 404 342 55 43 chr6 15307053 15307288 -134209749 + B4 SINE B4 2 239 -53 4 701 628 315 25 5 chr6 15307329 15307533 -134209504 + ID_B1 SINE B4 9 216 -8 4 701 225 360 72 18 chr6 15308016 15308183 -134208854 - L2 LINE L2 -545 2874 2699 4 701 2431 109 0 0 chr6 15308282 15308639 -134208398 - L1_Mm LINE L1 -1258 4625 4269 4 701 1122 63 114 0 chr6 15308639 15308797 -134208240 + L1_Mus1 LINE L1 6391 6566 -1 4 701 23 33 0 0 chr6 15308797 15308827 -134208210 + AT_rich Low_complexity Low_complexity 1 30 0 4 701 285 182 0 0 chr6 15308870 15308925 -134208112 + A-rich Low_complexity Low_complexity 1 55 0 4 701 2977 106 59 29 chr6 15309015 15309491 -134207546 - Lx3C LINE L1 -286 6690 6201 4 701 1364 168 40 0 chr6 15309491 15309741 -134207296 + Lx3C LINE L1 6701 6960 -16 4 701 1012 126 13 0 chr6 15310133 15310292 -134206745 - URR1A DNA MER1_type 0 226 66 4 701 212 279 48 32 chr6 15310340 15310403 -134206634 - PB1 SINE Alu -63 64 1 4 701 264 122 0 0 chr6 15310421 15310462 -134206575 + (ATG)n Simple_repeat Simple_repeat 2 42 0 4 701 278 197 0 27 chr6 15310468 15310541 -134206496 + GA-rich Low_complexity Low_complexity 2 72 0 4 701 1728 161 44 70 chr6 15313968 15314356 -134202681 - ORR1C1 LTR MaLR 0 378 1 4 701 252 0 0 0 chr6 15314459 15314487 -134202550 + (T)n Simple_repeat Simple_repeat 1 28 0 4 701 225 194 0 14 chr6 15314496 15314569 -134202468 - Lx9 LINE L1 0 7644 7573 4 701 627 51 0 0 chr6 15314733 15314812 -134202225 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 701 431 158 10 40 chr6 15314834 15314933 -134202104 - ORR1A4 LTR MaLR -69 260 165 4 701 589 213 47 16 chr6 15315008 15315137 -134201900 - ORR1B2 LTR MaLR -34 333 201 4 701 243 0 0 0 chr6 15315186 15315213 -134201824 + (T)n Simple_repeat Simple_repeat 1 27 0 4 701 748 312 165 13 chr6 15315304 15315424 -134201613 - B4 SINE B4 -14 278 139 4 701 1915 178 64 8 chr6 15315424 15315797 -134201240 + ORR1B1 LTR MaLR 1 394 0 4 701 748 312 165 13 chr6 15315797 15315913 -134201124 - B4 SINE B4 -154 138 7 4 701 227 336 61 9 chr6 15316285 15316399 -134200638 - MIRm SINE MIR -152 124 5 4 701 26 30 0 0 chr6 15319972 15320005 -134197032 + AT_rich Low_complexity Low_complexity 1 33 0 4 701 189 0 0 0 chr6 15321417 15321438 -134195599 + (T)n Simple_repeat Simple_repeat 1 21 0 4 701 2977 91 99 7 chr6 15322276 15322741 -134194296 - Lx3_Mus LINE L1 0 7009 6502 4 701 293 0 27 0 chr6 15323345 15323382 -134193655 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 701 1099 100 0 16 chr6 15324097 15324280 -134192757 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 4 701 851 101 32 0 chr6 15324283 15324441 -134192596 + (TTCC)n Simple_repeat Simple_repeat 3 165 0 4 701 220 171 0 0 chr6 15324455 15324490 -134192547 + polypyrimidine Low_complexity Low_complexity 4 38 0 4 701 23 33 0 0 chr6 15324680 15324710 -134192327 + AT_rich Low_complexity Low_complexity 1 30 0 4 701 22 56 0 0 chr6 15325272 15325308 -134191729 + AT_rich Low_complexity Low_complexity 1 36 0 4 701 396 0 0 0 chr6 15325821 15325865 -134191172 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 701 427 271 0 10 chr6 15325896 15325993 -134191044 + B1_Mur3 SINE Alu 14 109 -40 4 701 700 31 10 10 chr6 15326001 15326097 -134190940 + (TA)n Simple_repeat Simple_repeat 1 96 0 4 701 1112 52 7 0 chr6 15326211 15326347 -134190690 - B1_Mus2 SINE Alu -10 137 1 4 701 876 89 0 0 chr6 15327943 15328066 -134188971 + (CAG)n Simple_repeat Simple_repeat 3 125 0 4 701 396 0 0 0 chr6 15329545 15329589 -134187448 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 701 249 33 0 0 chr6 15329649 15329679 -134187358 + (CAG)n Simple_repeat Simple_repeat 1 30 0 4 701 687 99 0 0 chr6 15330424 15330525 -134186512 + (TA)n Simple_repeat Simple_repeat 2 102 0 4 701 481 290 7 14 chr6 15331674 15331814 -134185223 - B1F SINE Alu -7 142 4 4 701 494 251 107 43 chr6 15332103 15332290 -134184747 + MER2 DNA MER2_type 22 220 -125 4 701 294 222 11 11 chr6 15332293 15332384 -134184653 + (TA)n Simple_repeat Simple_repeat 2 92 0 4 701 293 247 0 11 chr6 15332414 15332504 -134184533 + GA-rich Low_complexity Low_complexity 2 90 0 4 701 43 20 0 0 chr6 15333305 15333355 -134183682 + AT_rich Low_complexity Low_complexity 1 50 0 4 701 765 358 43 61 chr6 15333372 15333765 -134183272 + Tigger7 DNA MER2_type 24 409 -2082 4 701 719 207 20 46 chr6 15333769 15333921 -134183116 + B1_Mur3 SINE Alu 1 148 -1 4 701 296 113 32 0 chr6 15333921 15333983 -134183054 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 4 701 383 298 148 22 chr6 15333986 15334168 -134182869 + Tigger7 DNA MER2_type 400 604 -1887 4 701 21 36 0 0 chr6 15334694 15334722 -134182315 + AT_rich Low_complexity Low_complexity 1 28 0 4 701 2679 151 20 22 chr6 15334722 15335211 -134181826 - Lx2 LINE L1 -3 6994 6507 4 701 423 313 92 0 chr6 15335220 15335351 -134181686 + B1_Mur1 SINE Alu 6 148 -1 4 702 510 67 0 0 chr6 15335957 15336032 -134181005 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 702 419 0 20 0 chr6 15336032 15336083 -134180954 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 702 687 204 27 34 chr6 15336325 15336472 -134180565 + B1_Mur3 SINE Alu 1 146 -3 4 702 405 0 0 0 chr6 15336550 15336595 -134180442 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 702 199 50 24 48 chr6 15336595 15336637 -134180400 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 4 702 793 175 14 7 chr6 15336638 15336782 -134180255 - B1_Mur4 SINE Alu -1 149 5 4 702 271 310 0 29 chr6 15336947 15337050 -134179987 + (TATATG)n Simple_repeat Simple_repeat 3 102 0 4 702 627 26 0 0 chr6 15337172 15337249 -134179788 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 702 288 298 86 9 chr6 15337360 15337465 -134179572 - B1_Mus2 SINE Alu -34 113 1 4 702 692 257 35 40 chr6 15337465 15337551 -134179486 - B4A SINE B4 -205 87 3 4 702 451 286 0 0 chr6 15337556 15337647 -134179390 - B4A SINE B4 -200 92 2 4 702 27 29 0 0 chr6 15338775 15338809 -134178228 + AT_rich Low_complexity Low_complexity 1 34 0 4 702 5041 25 0 0 chr6 15339377 15340049 -134176988 - L1Md_A LINE L1 -610 5972 5301 4 702 5188 25 0 0 chr6 15340049 15340652 -134176385 + L1Md_A LINE L1 5980 6582 0 4 702 213 189 150 29 chr6 15341094 15341162 -134175875 - L2a LINE L2 -18 3408 3280 4 702 214 196 0 19 chr6 15341204 15341256 -134175781 + GA-rich Low_complexity Low_complexity 1 51 0 4 702 195 356 79 76 chr6 15341487 15341907 -134175130 - L2a LINE L2 -354 3065 2645 4 702 3247 32 0 0 chr6 15342716 15343094 -134173943 - L1Md_F3 LINE L1 -151 6433 6056 4 702 216 0 0 0 chr6 15343094 15343118 -134173919 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 4 702 1789 222 75 48 chr6 15343124 15343645 -134173392 - Lx7 LINE L1 -1 7695 7161 4 702 741 23 0 0 chr6 15343716 15343803 -134173234 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 4 702 1370 15 15 5 chr6 15343962 15344165 -134172872 + (TAG)n Simple_repeat Simple_repeat 1 205 0 4 702 239 145 58 0 chr6 15344190 15344259 -134172778 + CT-rich Low_complexity Low_complexity 1 73 0 4 702 1150 55 7 0 chr6 15345299 15345445 -134171592 - B1_Mm SINE Alu 0 147 1 4 702 24 32 0 0 chr6 15347174 15347205 -134169832 + AT_rich Low_complexity Low_complexity 1 31 0 4 702 220 27 0 51 chr6 15348438 15348477 -134168560 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 702 21 57 0 0 chr6 15348917 15348952 -134168085 + AT_rich Low_complexity Low_complexity 1 35 0 4 702 219 185 0 18 chr6 15350128 15350183 -134166854 + T-rich Low_complexity Low_complexity 4 57 0 4 702 212 0 36 0 chr6 15352875 15352903 -134164134 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 702 183 204 0 0 chr6 15353278 15353322 -134163715 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 702 201 39 0 0 chr6 15353324 15353350 -134163687 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 702 1044 74 0 7 chr6 15353350 15353486 -134163551 - B1_Mm SINE Alu -9 138 4 4 702 540 0 0 0 chr6 15354902 15354962 -134162075 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 702 180 259 0 18 chr6 15355641 15355696 -134161341 + MIRc SINE MIR 207 260 -8 4 702 21 0 0 0 chr6 15356779 15356800 -134160237 + AT_rich Low_complexity Low_complexity 1 21 0 4 702 282 56 0 0 chr6 15361939 15361975 -134155062 + (A)n Simple_repeat Simple_repeat 1 36 0 4 702 255 125 0 0 chr6 15362757 15362797 -134154240 + (T)n Simple_repeat Simple_repeat 1 40 0 4 702 25 0 0 0 chr6 15365468 15365493 -134151544 + AT_rich Low_complexity Low_complexity 1 25 0 4 702 222 279 57 105 chr6 15367012 15367136 -134149901 - B1F1 SINE Alu -28 121 4 4 702 23 68 0 0 chr6 15367862 15367906 -134149131 + AT_rich Low_complexity Low_complexity 1 44 0 4 702 387 0 0 0 chr6 15368164 15368207 -134148830 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 702 581 284 32 40 chr6 15369994 15370269 -134146768 - RLTR20D LTR ERVK -285 283 1 4 702 1132 62 0 7 chr6 15370313 15370324 -134146713 - B1_Mus1 SINE Alu 0 148 138 4 702 315 0 0 0 chr6 15370324 15370359 -134146678 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 702 1132 62 0 7 chr6 15370359 15370492 -134146545 - B1_Mus1 SINE Alu -11 137 5 4 702 294 306 0 0 chr6 15370974 15371046 -134145991 - B4A SINE B4 -218 74 3 5 702 543 16 0 0 chr6 15373216 15373280 -134143757 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 5 702 267 31 0 0 chr6 15374570 15374602 -134142435 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 702 28 29 0 0 chr6 15375466 15375501 -134141536 + AT_rich Low_complexity Low_complexity 1 35 0 5 702 261 161 0 0 chr6 15376955 15376992 -134140045 + A-rich Low_complexity Low_complexity 1 37 0 5 702 1201 54 0 0 chr6 15376992 15377139 -134139898 + B1_Mus2 SINE Alu 1 147 0 5 702 261 161 0 0 chr6 15377139 15377157 -134139880 + A-rich Low_complexity Low_complexity 38 55 0 5 702 342 0 0 0 chr6 15378571 15378609 -134138428 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 702 224 254 30 0 chr6 15378610 15378677 -134138360 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 5 702 228 227 0 0 chr6 15378614 15378658 -134138379 + (TATG)n Simple_repeat Simple_repeat 3 46 0 5 702 211 309 99 40 chr6 15381036 15381137 -134135900 - MIR SINE MIR -143 119 13 5 702 195 100 0 0 chr6 15381624 15381654 -134135383 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 702 369 279 87 29 chr6 15381931 15382070 -134134967 + PB1D10 SINE Alu 24 140 -9 5 702 481 283 0 0 chr6 15382961 15383067 -134133970 - PB1D10 SINE Alu -11 106 1 5 702 21 36 0 0 chr6 15384961 15384989 -134132048 + AT_rich Low_complexity Low_complexity 1 28 0 5 702 22 0 0 0 chr6 15386027 15386049 -134130988 + AT_rich Low_complexity Low_complexity 1 22 0 5 702 24 32 0 0 chr6 15387132 15387163 -134129874 + AT_rich Low_complexity Low_complexity 1 31 0 5 702 212 209 0 43 chr6 15388197 15388227 -134128810 + polypyrimidine Low_complexity Low_complexity 40 68 0 5 702 180 0 0 0 chr6 15388227 15388247 -134128790 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 702 212 209 0 43 chr6 15388247 15388286 -134128751 + polypyrimidine Low_complexity Low_complexity 2 39 0 5 702 432 135 0 0 chr6 15390090 15390164 -134126873 + (A)n Simple_repeat Simple_repeat 1 74 0 5 702 213 39 0 0 chr6 15392337 15392363 -134124674 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 702 22 35 0 0 chr6 15392547 15392576 -134124461 + AT_rich Low_complexity Low_complexity 1 29 0 5 702 810 234 33 24 chr6 15393603 15393813 -134123224 - B3 SINE B2 -3 213 2 5 702 492 18 0 0 chr6 15394636 15394693 -134122344 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 702 512 163 118 1 chr6 15395634 15395741 -134121296 - B1_Mur1 SINE Alu -21 128 10 5 702 3775 115 142 101 chr6 15396297 15396779 -134120258 + RMER17A2 LTR ERVK 1 488 -418 5 702 718 67 9 9 chr6 15396779 15396885 -134120152 + (TTC)n Simple_repeat Simple_repeat 2 107 0 5 702 3775 115 142 101 chr6 15396885 15397272 -134119765 + RMER17A2 LTR ERVK 489 905 -1 5 702 510 17 0 0 chr6 15398006 15398065 -134118972 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 702 723 266 0 34 chr6 15398069 15398217 -134118820 - RSINE1 SINE B4 -17 148 6 5 702 539 220 84 30 chr6 15399044 15399175 -134117862 + B1_Mur2 SINE Alu 11 148 -1 5 702 553 270 108 125 chr6 15399283 15399571 -134117466 - MTE2a LTR MaLR -94 285 3 5 702 471 35 0 0 chr6 15399897 15399954 -134117083 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 702 285 410 5 53 chr6 15400089 15400277 -134116760 + MIR3 SINE MIR 22 200 -8 5 702 1723 188 142 10 chr6 15401221 15401865 -134115172 - RMER6A LTR ERVK 0 756 3 5 702 261 57 0 0 chr6 15402147 15402182 -134114855 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 702 38825 11 4 6 chr6 15402188 15408348 -134108689 - L1Md_A LINE L1 -1 6581 440 5 702 899 185 124 0 chr6 15408420 15408669 -134108368 - Lx9 LINE L1 -5 7639 7360 5 702 23 33 0 0 chr6 15409137 15409167 -134107870 + AT_rich Low_complexity Low_complexity 1 30 0 5 702 330 26 0 0 chr6 15409232 15409271 -134107766 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 702 520 178 331 0 chr6 15409363 15409526 -134107511 + RMER1C Other Other 1126 1342 0 5 702 484 284 26 0 chr6 15409537 15409653 -134107384 + RSINE1 SINE B4 4 122 -43 5 702 1175 242 45 30 chr6 15409684 15410021 -134107016 - RMER5 LTR ERV1 -10 524 183 5 702 6691 92 26 38 chr6 15410101 15411420 -134105617 + Lx LINE L1 5328 6644 -10 5 702 396 0 0 0 chr6 15411436 15411480 -134105557 + (GAA)n Simple_repeat Simple_repeat 2 45 0 5 702 260 277 35 35 chr6 15411480 15411566 -134105471 - RMER5 LTR ERV1 -446 88 3 5 702 2481 154 84 45 chr6 15411778 15412375 -134104662 - RMER3D-int LTR ERVK -691 2151 1532 5 702 2454 195 47 42 chr6 15412394 15413090 -134103947 + RMER3D-int LTR ERVK 2143 2842 0 5 702 2048 153 25 0 chr6 15413090 15413449 -134103588 + RLTR17 LTR ERVK 1 368 -324 5 702 498 33 0 0 chr6 15414669 15414729 -134102308 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 702 665 314 141 53 chr6 15415494 15415618 -134101419 + MTD LTR MaLR 10 144 -275 5 702 3263 188 164 33 chr6 15415618 15416378 -134100659 + RMER13A LTR ERVK 1 860 0 5 702 665 285 133 99 chr6 15416378 15416620 -134100417 + MTD LTR MaLR 130 368 -11 5 702 351 267 37 19 chr6 15417034 15417141 -134099896 + RLTR23 LTR ERV1 322 430 0 5 702 795 276 102 59 chr6 15417257 15417577 -134099460 + ORR1E LTR MaLR 1 370 -9 5 702 253 326 97 42 chr6 15417613 15417757 -134099280 - MLT1E2 LTR MaLR -106 399 248 5 702 276 256 23 68 chr6 15417878 15417966 -134099071 - MLT1E2 LTR MaLR -539 88 5 5 702 468 0 0 0 chr6 15420972 15421024 -134096013 + (TTTTA)n Simple_repeat Simple_repeat 2 53 0 5 702 837 114 17 28 chr6 15422274 15422454 -134094583 + GA-rich Low_complexity Low_complexity 3 180 0 5 702 1832 205 125 0 chr6 15423659 15424084 -134092953 - Lx6 LINE L1 -709 6751 6274 5 702 261 0 0 0 chr6 15426199 15426228 -134090809 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 702 21 0 0 0 chr6 15426641 15426662 -134090375 + AT_rich Low_complexity Low_complexity 1 21 0 5 702 184 176 0 56 chr6 15427800 15427836 -134089201 + L2 LINE L2 481 514 -2905 5 702 4355 107 11 0 chr6 15428772 15429388 -134087649 - L1_Mus2 LINE L1 0 6566 5944 5 702 3503 121 60 3 chr6 15429400 15429980 -134087057 - Lx LINE L1 -175 6479 5867 5 702 905 137 0 74 chr6 15429982 15430171 -134086866 + Lx LINE L1 6480 6654 0 5 702 243 343 51 7 chr6 15430203 15430341 -134086696 - MLT1B LTR MaLR -244 146 3 5 702 195 42 0 0 chr6 15430738 15430762 -134086275 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 702 450 0 0 0 chr6 15430763 15430813 -134086224 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 702 230 311 148 19 chr6 15430818 15430920 -134086117 - B3 SINE B2 -67 149 34 5 702 755 281 109 4 chr6 15430920 15431100 -134085937 + MTD LTR MaLR 1 199 -220 5 702 6665 21 0 0 chr6 15431100 15431856 -134085181 + L1Md_F2 LINE L1 5809 6564 -18 5 702 755 281 109 4 chr6 15431856 15431904 -134085133 + MTD LTR MaLR 200 252 -167 5 702 803 279 88 4 chr6 15431907 15432145 -134084892 + MTD LTR MaLR 162 419 0 5 702 276 247 61 51 chr6 15432145 15432187 -134084850 - B2_Mm2 SINE B2 -152 43 1 5 702 3252 213 45 28 chr6 15434400 15435174 -134081863 + ORR1B1-int LTR MaLR 202 988 -521 5 702 330 194 0 0 chr6 15436892 15436959 -134080078 + A-rich Low_complexity Low_complexity 1 67 0 5 702 418 349 73 28 chr6 15440070 15440356 -134076681 - Tigger9a DNA Tigger -77 655 357 5 702 273 364 7 0 chr6 15442666 15442806 -134074231 + L1M5 LINE L1 4858 4998 -1148 5 702 263 106 43 0 chr6 15443072 15443119 -134073918 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 5 702 261 128 0 0 chr6 15443119 15443166 -134073871 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 702 553 39 0 13 chr6 15443730 15443808 -134073229 + L1_Mm LINE L1 3913 3989 -1894 5 702 291 267 13 0 chr6 15443808 15443883 -134073154 + PB1D10 SINE Alu 35 110 -7 5 702 324 0 0 0 chr6 15443981 15444017 -134073020 + (TAA)n Simple_repeat Simple_repeat 1 36 0 5 702 2969 178 18 2 chr6 15444604 15445161 -134071876 + Lx LINE L1 6089 6654 0 5 702 1253 34 0 0 chr6 15445164 15445311 -134071726 + B1_Mm SINE Alu 1 147 0 5 702 227 56 56 0 chr6 15445327 15445363 -134071674 + (TAAAAA)n Simple_repeat Simple_repeat 3 40 0 5 702 669 25 0 0 chr6 15445562 15445641 -134071396 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 5 702 440 158 70 0 chr6 15445657 15445771 -134071266 - L1_Mus3 LINE L1 0 6638 6517 5 702 898 322 55 73 chr6 15445795 15446290 -134070747 - Charlie1a DNA MER1_type -866 589 104 5 702 914 296 68 28 chr6 15446304 15446630 -134070407 + MTE2b LTR MaLR 2 340 -39 5 702 906 81 0 0 chr6 15447179 15447303 -134069734 + (GAAA)n Simple_repeat Simple_repeat 2 125 0 5 702 222 62 0 0 chr6 15447354 15447386 -134069651 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 702 200 235 20 0 chr6 15447416 15447467 -134069570 + A-rich Low_complexity Low_complexity 4 55 0 5 702 1493 162 74 68 chr6 15447836 15448161 -134068876 + ORR1A4 LTR MaLR 1 327 -2 5 702 24 53 0 0 chr6 15451830 15451868 -134065169 + AT_rich Low_complexity Low_complexity 1 38 0 5 702 394 267 92 0 chr6 15451919 15452039 -134064998 - RSINE1 SINE B4 -22 143 13 5 702 351 167 0 0 chr6 15452128 15452194 -134064843 + A-rich Low_complexity Low_complexity 1 66 0 5 702 829 196 132 68 chr6 15453565 15453704 -134063333 + Lx9 LINE L1 7329 7477 -167 5 702 222 37 0 0 chr6 15453704 15453731 -134063306 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 5 702 829 196 132 68 chr6 15453731 15453887 -134063150 + Lx9 LINE L1 7478 7642 -2 5 702 430 353 99 0 chr6 15455073 15455274 -134061763 - MIR SINE MIR -20 242 22 5 702 978 271 101 52 chr6 15456391 15456738 -134060299 + MTE2b LTR MaLR 3 366 -13 5 702 24 0 0 0 chr6 15457087 15457111 -134059926 + AT_rich Low_complexity Low_complexity 1 24 0 5 702 446 270 0 29 chr6 15457590 15457693 -134059344 + PB1D9 SINE Alu 1 100 -20 5 702 300 53 0 0 chr6 15457710 15457748 -134059289 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 5 702 22 0 0 0 chr6 15458280 15458302 -134058735 + AT_rich Low_complexity Low_complexity 1 22 0 5 702 2365 56 3 0 chr6 15458578 15458881 -134058156 + L1Md_F2 LINE L1 6278 6581 -1 6 702 241 163 0 0 chr6 15459815 15459864 -134057173 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 702 2294 240 34 67 chr6 15459907 15460000 -134057037 + RMER6C LTR ERVK 1 95 -595 6 702 4552 37 0 2 chr6 15460000 15460547 -134056490 - L1Md_F2 LINE L1 -2 6580 6035 6 702 2294 240 34 67 chr6 15460547 15461167 -134055870 + RMER6C LTR ERVK 96 690 0 6 702 203 409 0 0 chr6 15461377 15461465 -134055572 + MIR SINE MIR 32 119 -143 6 702 226 295 71 71 chr6 15461793 15461906 -134055131 - ORR1E LTR MaLR -14 345 233 6 702 237 123 77 0 chr6 15462551 15462616 -134054421 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 702 902 268 160 33 chr6 15462810 15463142 -134053895 - ORR1D1 LTR MaLR 0 374 1 6 702 27 0 0 0 chr6 15463363 15463390 -134053647 + AT_rich Low_complexity Low_complexity 1 27 0 6 702 29 60 0 0 chr6 15464658 15464708 -134052329 + AT_rich Low_complexity Low_complexity 1 50 0 6 702 4959 132 9 0 chr6 15465573 15466323 -134050714 - Lx2 LINE L1 -1 6996 6240 6 87 3339 101 71 16 chr6 15466324 15466899 -134050138 + Lx2 LINE L1 5651 6257 -740 6 703 5826 82 78 5 chr6 15466990 15467822 -134049215 - RLTR13B1 LTR ERVK 0 893 1 6 703 36416 18 4 7 chr6 15467938 15473748 -134043289 + L1Md_A LINE L1 1 5586 -297 6 703 8705 16 4 0 chr6 15473748 15474740 -134042297 + L1Md_A LINE L1 5587 6582 0 6 703 351 0 0 0 chr6 15474850 15474889 -134042148 + (A)n Simple_repeat Simple_repeat 1 39 0 6 703 576 275 73 97 chr6 15474891 15475056 -134041981 + B3A SINE B2 27 187 -8 6 703 593 248 7 47 chr6 15475421 15475569 -134041468 - B1_Mur1 SINE Alu -7 142 1 6 703 366 352 74 42 chr6 15475664 15475975 -134041062 - L1M5 LINE L1 -900 5246 4926 6 703 2801 83 34 0 chr6 15476066 15476451 -134040586 - MTB LTR MaLR -2 398 1 6 703 255 322 62 46 chr6 15476561 15476932 -134040105 - L1M5 LINE L1 -1405 4741 4365 6 703 1048 252 25 50 chr6 15478382 15478662 -134038375 + B4 SINE B4 9 281 -11 6 703 441 0 0 0 chr6 15479299 15479348 -134037689 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 703 540 0 0 0 chr6 15479390 15479450 -134037587 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 703 594 0 0 0 chr6 15479450 15479516 -134037521 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 6 703 374 175 0 12 chr6 15480085 15480166 -134036871 + CT-rich Low_complexity Low_complexity 2 81 0 6 703 485 271 68 103 chr6 15480560 15480683 -134036354 + MER33 DNA MER1_type 11 130 -194 6 703 2506 133 44 25 chr6 15480683 15481114 -134035923 - Lx3C LINE L1 -2 6974 6536 6 703 485 271 68 103 chr6 15481114 15481311 -134035726 + MER33 DNA MER1_type 131 320 -4 6 703 392 131 38 38 chr6 15481392 15481532 -134035505 + (TCTCTG)n Simple_repeat Simple_repeat 5 144 0 6 703 963 109 0 0 chr6 15481532 15481706 -134035331 + (TC)n Simple_repeat Simple_repeat 1 174 0 6 703 392 131 38 38 chr6 15481706 15481724 -134035313 + (TCTCTG)n Simple_repeat Simple_repeat 5 22 0 6 703 238 360 0 11 chr6 15482425 15482512 -134034525 + ID_B1 SINE B4 134 219 -5 6 703 22 0 0 0 chr6 15482931 15482953 -134034084 + AT_rich Low_complexity Low_complexity 1 22 0 6 703 360 0 0 0 chr6 15482971 15483011 -134034026 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 6 703 241 227 181 76 chr6 15483016 15483121 -134033916 - PB1D9 SINE Alu 0 120 5 6 703 256 232 24 0 chr6 15483214 15483296 -134033741 - L1M3 LINE L1 -866 5274 5191 6 703 21 0 0 0 chr6 15483298 15483319 -134033718 + AT_rich Low_complexity Low_complexity 1 21 0 6 703 959 89 89 0 chr6 15483319 15483454 -134033583 - B1_Mm SINE Alu 0 147 1 6 703 1143 70 0 0 chr6 15483486 15483628 -134033409 - B1_Mus2 SINE Alu -5 142 1 6 703 946 225 115 92 chr6 15483638 15483735 -134033302 - Lx9 LINE L1 -1 7643 7522 6 703 312 27 0 0 chr6 15483735 15483772 -134033265 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 703 216 0 0 0 chr6 15483772 15483795 -134033242 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 703 946 225 115 92 chr6 15483795 15484131 -134032906 - Lx9 LINE L1 -123 7521 7201 6 703 1492 202 78 41 chr6 15484475 15484820 -134032217 - ORR1D1 LTR MaLR 0 374 17 6 703 6755 109 18 6 chr6 15484840 15485953 -134031084 - L1_Mus4 LINE L1 -2 6634 5510 6 703 281 182 175 35 chr6 15485955 15486069 -134030968 + L1MB4 LINE L1 6039 6168 -12 6 703 1029 60 0 43 chr6 15486352 15486491 -134030546 + B1_Mus2 SINE Alu 2 134 -13 6 703 342 0 0 0 chr6 15486491 15486529 -134030508 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 6 703 973 175 25 34 chr6 15486826 15487063 -134029974 - Lx7 LINE L1 -1 7695 7461 6 703 749 165 6 28 chr6 15487891 15488072 -134028965 + (TA)n Simple_repeat Simple_repeat 1 177 0 6 703 266 281 0 10 chr6 15488086 15488190 -134028847 + (TA)n Simple_repeat Simple_repeat 1 103 0 6 703 926 294 86 3 chr6 15488232 15488539 -134028498 - MTEa LTR MaLR -2 377 52 6 703 1187 68 0 0 chr6 15490187 15490334 -134026703 - B1_Mm SINE Alu 0 147 1 6 703 21 57 0 0 chr6 15490341 15490376 -134026661 + AT_rich Low_complexity Low_complexity 1 35 0 6 703 430 280 42 74 chr6 15490504 15490693 -134026344 - B3A SINE B2 -15 183 1 6 703 375 364 65 50 chr6 15491137 15491415 -134025622 - L1MC LINE L1 -2232 5650 5369 6 703 912 339 60 48 chr6 15491938 15492421 -134024616 - MLT1F1 LTR MaLR -18 551 63 6 703 689 294 0 7 chr6 15492466 15492613 -134024424 - RSINE1 SINE B4 -14 151 6 6 703 3273 36 18 0 chr6 15492707 15493096 -134023941 + MTA_Mm LTR MaLR 1 396 0 6 703 276 343 56 0 chr6 15494253 15494361 -134022676 - B1F1 SINE Alu -21 128 15 6 703 1187 122 33 6 chr6 15494479 15494661 -134022376 - B2_Mm2 SINE B2 -7 188 2 6 703 778 276 18 37 chr6 15495026 15495244 -134021793 - B3 SINE B2 0 216 3 6 703 237 338 104 97 chr6 15496353 15496612 -134020425 - MLT1L LTR MaLR -163 447 187 6 703 189 74 0 0 chr6 15496615 15496642 -134020395 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 703 1039 93 12 0 chr6 15498131 15498293 -134018744 + (TC)n Simple_repeat Simple_repeat 2 165 0 6 703 231 114 0 0 chr6 15499734 15499769 -134017268 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 703 2501 34 2 277 chr6 15500382 15500920 -134016117 - RLTR10 LTR ERVK 0 390 1 1 703 15459 29 14 29 chr6 15500922 15502925 -134014112 - RLTR10-int LTR ERVK -3 1984 11 1 703 2603 26 6 206 chr6 15502972 15503457 -134013580 - RLTR10 LTR ERVK -2 388 1 1 703 12275 24 16 0 chr6 15503459 15505302 -134011735 - RLTR10-int LTR ERVK -3 1984 40 1 703 2764 26 6 206 chr6 15505314 15505799 -134011238 - RLTR10 LTR ERVK -2 388 1 1 703 243 0 0 0 chr6 15505806 15505833 -134011204 + (A)n Simple_repeat Simple_repeat 1 27 0 2 703 930 40 16 16 chr6 15505874 15506001 -134011036 + RLTR10 LTR ERVK 262 388 -2 3 703 1101 75 0 0 chr6 15506048 15506195 -134010842 + RLTR10-int LTR ERVK 11 157 -1830 3 703 1658 68 4 17 chr6 15506195 15506434 -134010603 + RLTR10 LTR ERVK 83 318 -72 3 703 309 143 0 0 chr6 15506455 15506518 -134010519 + RLTR10 LTR ERVK 259 321 -69 4 703 521 24 23 23 chr6 15506519 15506605 -134010432 + RLTR10 LTR ERVK 259 344 -46 5 703 935 55 15 15 chr6 15506651 15506781 -134010256 + RLTR10 LTR ERVK 259 388 -2 6 703 4158 37 0 0 chr6 15506828 15507344 -134009693 + RLTR10-int LTR ERVK 11 526 -1461 6 703 1869 69 4 31 chr6 15507347 15507631 -134009406 - RLTR10-int LTR ERVK -1735 252 10 7 703 2512 31 2 277 chr6 15507633 15508171 -134008866 - RLTR10 LTR ERVK 0 390 1 7 703 1683 222 56 48 chr6 15508654 15509215 -134007822 + RLTR20A LTR ERVK 5 577 0 8 703 1602 45 0 0 chr6 15510318 15510520 -134006517 - L1Md_F2 LINE L1 -381 6201 6000 9 703 2983 64 0 0 chr6 15510522 15510977 -134006060 + L1Md_F2 LINE L1 6194 6582 0 9 703 198 0 0 0 chr6 15511524 15511546 -134005491 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 703 219 179 35 18 chr6 15512176 15512233 -134004804 + A-rich Low_complexity Low_complexity 4 61 0 1 703 1606 149 47 40 chr6 15512276 15512597 -134004440 - Lx4A LINE L1 -1 7057 6735 1 703 686 182 28 7 chr6 15513128 15513272 -134003765 - Lx6 LINE L1 -4 7456 7310 1 703 274 288 12 0 chr6 15513820 15513900 -134003137 - L1MEd LINE L1 -5541 578 498 1 703 265 343 48 27 chr6 15514181 15514328 -134002709 - L1MEd LINE L1 -5968 151 2 1 703 186 43 0 0 chr6 15515235 15515258 -134001779 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 703 25 31 0 0 chr6 15515833 15515865 -134001172 + AT_rich Low_complexity Low_complexity 1 32 0 1 703 1276 188 45 82 chr6 15515891 15516245 -134000792 + RMER1C Other Other 999 1339 -3 1 703 249 93 18 36 chr6 15516710 15516766 -134000271 + (TAA)n Simple_repeat Simple_repeat 1 55 0 1 703 624 248 35 75 chr6 15518180 15518247 -133998790 - RLTR45 LTR ERVK 0 482 417 1 703 2989 35 0 0 chr6 15518247 15518593 -133998444 - ORR1A0 LTR MaLR 0 346 1 2 703 624 248 35 75 chr6 15518593 15518752 -133998285 - RLTR45 LTR ERVK -66 416 265 1 703 462 261 72 22 chr6 15521138 15521318 -133995719 + L1MA4 LINE L1 5670 5858 -442 2 703 3734 228 24 6 chr6 15522040 15522861 -133994176 + Lx5 LINE L1 6203 7038 -12 2 703 342 0 0 0 chr6 15522861 15522899 -133994138 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 703 3734 228 24 6 chr6 15522899 15522910 -133994127 + Lx5 LINE L1 7039 7049 -1 2 703 308 275 52 84 chr6 15523038 15523134 -133993903 + MLT2C1 LTR ERVL 20 111 -286 2 703 1112 90 0 0 chr6 15523134 15523279 -133993758 + B1_Mus1 SINE Alu 2 146 -2 2 703 308 275 52 84 chr6 15523279 15523337 -133993700 + MLT2C1 LTR ERVL 112 169 -228 2 703 31991 17 67 8 chr6 15523615 15528694 -133988343 + L1Md_A LINE L1 211 5586 -297 2 703 8794 16 0 0 chr6 15528694 15529690 -133987347 + L1Md_A LINE L1 5587 6582 0 2 703 546 299 39 0 chr6 15529696 15529850 -133987187 + MTEa LTR MaLR 153 312 -67 2 703 537 16 0 0 chr6 15529852 15529914 -133987123 + (TC)n Simple_repeat Simple_repeat 2 63 0 2 703 3181 106 12 41 chr6 15529914 15530398 -133986639 - L1_Mus2 LINE L1 -4 6562 6093 2 703 2160 57 0 0 chr6 15530398 15530681 -133986356 + L1_Mus2 LINE L1 5826 6108 -458 2 703 2392 56 3 0 chr6 15530688 15531007 -133986030 + L1_Mus1 LINE L1 6248 6567 0 2 703 311 326 39 0 chr6 15531647 15531776 -133985261 + MER94 DNA AcHobo 1 134 0 3 703 513 32 0 0 chr6 15532872 15532935 -133984102 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 703 2115 112 0 27 chr6 15532993 15533360 -133983677 + L1_Mm LINE L1 3826 4182 -1701 3 703 724 218 64 34 chr6 15534491 15534695 -133982342 - B3 SINE B2 -5 211 2 3 703 33002 71 7 5 chr6 15534937 15540361 -133976676 - L1Md_F2 LINE L1 -1 6581 1125 3 703 1639 59 14 5 chr6 15540361 15540581 -133976456 - L1Md_F2 LINE L1 0 6582 6361 3 703 3655 132 81 1 chr6 15540581 15541197 -133975840 - L1Md_F2 LINE L1 -5492 1124 276 3 703 245 291 37 25 chr6 15541284 15541365 -133975672 + L2a LINE L2 3081 3162 -264 3 703 481 271 6 0 chr6 15541417 15541927 -133975110 + (CA)n Simple_repeat Simple_repeat 1 513 0 3 703 236 206 95 0 chr6 15542113 15542176 -133974861 + Charlie4a DNA MER1_type 32 100 -408 3 703 38 61 0 0 chr6 15542177 15542243 -133974794 + AT_rich Low_complexity Low_complexity 1 66 0 3 703 409 216 198 0 chr6 15542266 15542428 -133974609 - Lx9 LINE L1 -23 7621 7428 4 703 548 310 56 16 chr6 15542558 15542762 -133974275 + MTC LTR MaLR 2 197 -199 4 703 2322 124 44 16 chr6 15542762 15543198 -133973839 - Lx3A LINE L1 -707 6274 5827 4 703 6395 95 18 50 chr6 15543201 15544612 -133972425 - L1_Mus3 LINE L1 0 6638 5276 4 703 219 36 0 0 chr6 15544612 15544640 -133972397 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 703 5449 84 26 25 chr6 15544640 15544943 -133972094 - L1_Mus3 LINE L1 -611 5275 4990 4 703 3915 121 5 2 chr6 15544944 15545524 -133971513 + Lx3A LINE L1 6394 6975 -6 4 703 35 24 0 0 chr6 15545524 15545566 -133971471 + AT_rich Low_complexity Low_complexity 1 42 0 4 703 1553 190 69 7 chr6 15545579 15545870 -133971167 + MTC LTR MaLR 113 421 0 4 703 21 36 0 0 chr6 15545910 15545938 -133971099 + AT_rich Low_complexity Low_complexity 1 28 0 4 703 401 286 11 0 chr6 15546005 15546096 -133970941 + PB1D7 SINE Alu 23 114 -6 4 703 1216 48 0 0 chr6 15546100 15546245 -133970792 + B1_Mus1 SINE Alu 1 145 -3 5 703 495 0 0 0 chr6 15546245 15546300 -133970737 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5 703 191 156 44 0 chr6 15546328 15546373 -133970664 + GA-rich Low_complexity Low_complexity 5 51 0 5 703 568 209 256 0 chr6 15546676 15546848 -133970189 + B3 SINE B2 1 216 0 5 703 180 0 0 0 chr6 15547834 15547854 -133969183 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 703 36 70 0 0 chr6 15548364 15548435 -133968602 + AT_rich Low_complexity Low_complexity 1 71 0 5 703 22 88 0 0 chr6 15548514 15548571 -133968466 + AT_rich Low_complexity Low_complexity 1 57 0 5 703 261 257 147 13 chr6 15549277 15549352 -133967685 + PB1D10 SINE Alu 30 114 -13 5 703 5516 88 16 1 chr6 15549520 15550535 -133966502 - L1VL2 LINE L1 -1799 1816 785 5 703 1557 90 0 13 chr6 15550545 15550771 -133966266 - L1Md_F2 LINE L1 0 6582 6360 5 703 35627 42 0 21 chr6 15551007 15557531 -133959506 - L1Md_T LINE L1 0 6585 107 6 703 4327 115 9 8 chr6 15557532 15558170 -133958867 - L1VL2 LINE L1 -5535 800 162 5 703 295 28 0 0 chr6 15558197 15558233 -133958804 - L1Md_F2 LINE L1 -542 6040 6005 6 703 2452 78 27 19 chr6 15558233 15558598 -133958439 + L1Md_F2 LINE L1 6213 6580 -2 6 703 203 304 87 81 chr6 15558666 15558827 -133958210 + MER5A DNA MER1_type 7 168 -21 6 703 196 254 36 0 chr6 15559271 15559326 -133957711 + L3 LINE CR1 2299 2355 -2134 6 703 21 57 0 0 chr6 15559341 15559376 -133957661 + AT_rich Low_complexity Low_complexity 1 35 0 6 703 230 379 76 28 chr6 15559514 15559658 -133957379 + MIR3 SINE MIR 43 193 -15 6 703 500 296 114 47 chr6 15559797 15560095 -133956942 - MLT1H LTR MaLR -228 321 4 6 703 252 0 0 0 chr6 15560568 15560596 -133956441 + (A)n Simple_repeat Simple_repeat 1 28 0 6 703 705 228 135 5 chr6 15561037 15561222 -133955815 + B3 SINE B2 3 211 -5 6 703 261 0 0 0 chr6 15561383 15561412 -133955625 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 7 703 1738 191 13 64 chr6 15561774 15561828 -133955209 - ORR1B2 LTR MaLR -12 355 311 7 703 1258 101 21 5 chr6 15561828 15562017 -133955020 - B2_Mm2 SINE B2 -3 192 1 7 703 1738 191 13 64 chr6 15562017 15562336 -133954701 - ORR1B2 LTR MaLR -57 310 1 7 703 1623 133 29 11 chr6 15562511 15562784 -133954253 + RLTR9D LTR ERVK 126 403 0 7 703 1107 181 20 8 chr6 15562793 15563246 -133953791 + L1_Mur2 LINE L1 985 1446 -4431 7 703 538 267 62 76 chr6 15563246 15563591 -133953446 - RLTR9B LTR ERVK 0 437 1 7 703 2054 182 33 37 chr6 15563592 15563736 -133953301 + L1_Mur2 LINE L1 1442 1591 -4286 7 703 387 105 0 0 chr6 15563736 15563793 -133953244 + (TA)n Simple_repeat Simple_repeat 1 57 0 7 703 2054 182 33 37 chr6 15563793 15564157 -133952880 + L1_Mur2 LINE L1 1592 1948 -3929 7 703 1690 146 107 45 chr6 15564188 15564580 -133952457 + L1_Mur2 LINE L1 3471 3889 -1988 7 703 2830 199 3 35 chr6 15564580 15565152 -133951885 + Lx5 LINE L1 6479 7032 -18 7 703 312 27 0 0 chr6 15565152 15565189 -133951848 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 7 703 303 329 56 56 chr6 15565463 15565695 -133951342 + L1M5 LINE L1 2411 2642 -3504 7 703 1038 97 14 0 chr6 15565905 15566050 -133950987 + B1_Mus1 SINE Alu 1 147 -1 8 703 336 143 0 0 chr6 15566285 15566341 -133950696 + (TA)n Simple_repeat Simple_repeat 2 57 0 8 703 299 295 99 0 chr6 15567624 15567751 -133949286 - MIRb SINE MIR -39 169 35 8 703 1160 111 0 6 chr6 15568006 15568187 -133948850 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 703 450 0 0 0 chr6 15568293 15568343 -133948694 + (TTTCC)n Simple_repeat Simple_repeat 1 50 0 8 703 1126 91 11 11 chr6 15568345 15568523 -133948514 + (TCCCC)n Simple_repeat Simple_repeat 1 178 0 8 703 213 209 0 0 chr6 15568523 15568566 -133948471 + CT-rich Low_complexity Low_complexity 3 45 0 8 703 375 248 30 15 chr6 15569343 15569474 -133947563 - Lx7 LINE L1 -20 7676 7544 8 703 535 333 13 26 chr6 15569537 15569688 -133947349 - B1F SINE Alu 0 149 1 8 703 297 279 13 0 chr6 15569724 15569803 -133947234 - ID4_ SINE ID -2 81 2 8 703 303 348 93 0 chr6 15569906 15570024 -133947013 - RSINE1 SINE B4 -17 148 20 9 703 2493 83 17 74 chr6 15570051 15570469 -133946568 + L1_Mus3 LINE L1 6242 6635 -3 9 703 29 60 0 0 chr6 15570494 15570544 -133946493 + AT_rich Low_complexity Low_complexity 1 50 0 9 703 300 356 82 48 chr6 15570741 15571033 -133946004 - Charlie2a DNA MER1_type -2548 313 12 9 703 228 311 113 28 chr6 15571187 15571293 -133945744 - MIRc SINE MIR -133 135 21 9 703 611 84 0 18 chr6 15571695 15571804 -133945233 + (TCTCTG)n Simple_repeat Simple_repeat 6 112 0 9 703 681 281 0 0 chr6 15571817 15571981 -133945056 - RSINE1 SINE B4 0 165 2 9 703 372 43 0 0 chr6 15572835 15572881 -133944156 + (TC)n Simple_repeat Simple_repeat 2 47 0 9 703 180 0 0 0 chr6 15576254 15576274 -133940763 + (T)n Simple_repeat Simple_repeat 1 20 0 9 703 191 356 40 96 chr6 15576648 15576847 -133940190 + MIR SINE MIR 27 214 -54 9 703 192 135 0 0 chr6 15576972 15577009 -133940028 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 703 358 323 0 0 chr6 15577067 15577160 -133939877 - RSINE1 SINE B4 -61 104 12 1 703 1016 281 61 14 chr6 15578751 15579112 -133937925 - MTEb LTR MaLR 0 379 2 1 703 1975 130 6 21 chr6 15579171 15579267 -133937770 + Lx2A1 LINE L1 6665 6760 -248 1 703 1985 145 3 6 chr6 15579267 15579579 -133937458 + RLTR10E LTR ERVK 1 311 0 1 703 1975 130 6 21 chr6 15579579 15579820 -133937217 + Lx2A1 LINE L1 6761 6997 -11 1 703 247 386 46 17 chr6 15580141 15580315 -133936722 + MLT1I LTR MaLR 108 286 -125 1 703 374 283 11 0 chr6 15580396 15580488 -133936549 - ORR1E LTR MaLR -52 327 235 1 703 384 350 57 0 chr6 15580501 15580641 -133936396 - ORR1E LTR MaLR -208 151 4 1 703 1018 102 6 25 chr6 15581009 15581170 -133935867 + Lx2A LINE L1 6607 6764 -244 1 703 238 302 84 39 chr6 15581170 15581325 -133935712 - L1M2 LINE L1 -642 5658 5497 1 703 2057 311 107 14 chr6 15581353 15582360 -133934677 - Lx8 LINE L1 -55 7418 6296 1 703 1755 154 10 0 chr6 15582370 15582662 -133934375 - ORR1A2 LTR MaLR -32 295 1 1 703 1374 305 65 18 chr6 15582662 15583433 -133933604 - L1_Mur3 LINE L1 -3619 2261 1455 1 703 554 328 20 70 chr6 15583537 15583737 -133933300 - B3A SINE B2 -4 194 5 1 703 2081 176 35 3 chr6 15583951 15584299 -133932738 - ORR1B2 LTR MaLR -8 359 1 1 703 277 318 89 72 chr6 15584315 15584609 -133932428 + MLT1F LTR MaLR 169 510 -50 1 703 441 0 0 0 chr6 15585344 15585393 -133931644 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 703 417 20 0 0 chr6 15585963 15586013 -133931024 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 703 340 182 11 11 chr6 15586881 15586970 -133930067 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 703 673 289 63 42 chr6 15586971 15587209 -133929828 - B4A SINE B4 -2 290 48 1 703 201 39 0 0 chr6 15587735 15587761 -133929276 + (A)n Simple_repeat Simple_repeat 1 26 0 1 703 1002 62 0 0 chr6 15589230 15589360 -133927677 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 1 703 453 266 62 20 chr6 15590289 15590435 -133926602 - MER5B DNA MER1_type -26 152 1 1 703 384 88 0 0 chr6 15590616 15590673 -133926364 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 1 703 273 57 0 0 chr6 15590940 15590975 -133926062 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 703 300 27 0 0 chr6 15590975 15591011 -133926026 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 703 249 218 0 0 chr6 15591478 15591533 -133925504 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 703 25 51 0 0 chr6 15591744 15591783 -133925254 + AT_rich Low_complexity Low_complexity 1 39 0 1 703 1766 134 175 6 chr6 15592234 15592571 -133924466 + ORR1B1 LTR MaLR 1 394 0 1 703 278 349 9 78 chr6 15592722 15592837 -133924200 - ID_B1 SINE B4 -28 196 90 1 703 23 0 0 0 chr6 15592846 15592869 -133924168 + AT_rich Low_complexity Low_complexity 1 23 0 1 703 242 184 13 0 chr6 15592945 15593021 -133924016 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 703 243 349 0 0 chr6 15593504 15593570 -133923467 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 703 776 356 75 6 chr6 15593579 15593938 -133923099 - MER45B DNA Tip100 -537 503 120 1 703 189 107 0 0 chr6 15593938 15593966 -133923071 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 703 376 299 91 97 chr6 15594593 15595047 -133921990 + RLTR12B LTR ERVK 1 495 -32 1 703 1451 180 59 16 chr6 15595072 15595397 -133921640 + RLTR12B LTR ERVK 197 528 0 1 703 439 333 108 45 chr6 15595520 15595900 -133921137 + MT2A LTR ERVL 52 455 -78 1 703 321 374 15 68 chr6 15596036 15596168 -133920869 + PB1 SINE Alu 1 125 -2 1 703 231 366 68 50 chr6 15596168 15596192 -133920845 + B4A SINE B4 86 244 -48 1 703 265 204 0 0 chr6 15596203 15596247 -133920790 + ID2 SINE ID 2 45 -38 1 703 699 87 0 0 chr6 15596282 15596386 -133920651 + (GGAA)n Simple_repeat Simple_repeat 3 106 0 1 703 641 298 115 21 chr6 15596399 15596642 -133920395 + B4A SINE B4 1 266 -26 1 703 324 0 0 0 chr6 15596642 15596678 -133920359 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 703 564 87 0 0 chr6 15596678 15596770 -133920267 + (GA)n Simple_repeat Simple_repeat 1 92 0 1 704 254 384 0 0 chr6 15597975 15598074 -133918963 + PB1D10 SINE Alu 17 115 -2 1 704 862 250 181 7 chr6 15598432 15598832 -133918205 + MT2A LTR ERVL 1 601 0 1 704 2860 38 3 71 chr6 15598969 15599361 -133917676 - RLTR10B2 LTR ERVK 0 365 1 1 704 1280 218 84 25 chr6 15600356 15600714 -133916323 - MTE2b LTR MaLR 0 379 1 1 704 201 39 0 0 chr6 15600897 15600923 -133916114 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 704 510 289 0 29 chr6 15600923 15601062 -133915975 - B1_Mus2 SINE Alu -12 135 1 1 704 1424 203 23 23 chr6 15601168 15601511 -133915526 - L1_Rod LINE L1 -2871 2976 2634 1 704 411 279 34 44 chr6 15601667 15601873 -133915164 - Lx9 LINE L1 -127 7517 7314 1 704 22 80 0 0 chr6 15601901 15601951 -133915086 + AT_rich Low_complexity Low_complexity 1 50 0 1 704 1992 106 16 2 chr6 15601969 15602273 -133914764 - L1_Mus4 LINE L1 -292 6292 5978 1 704 1056 105 0 11 chr6 15602275 15602449 -133914588 + L1_Mus4 LINE L1 6459 6630 -6 1 704 1046 263 58 76 chr6 15602537 15603101 -133913936 - L1_Rod LINE L1 -469 5378 4825 1 704 266 284 0 11 chr6 15603111 15603200 -133913837 - L1M2 LINE L1 -2386 3757 3670 1 704 6821 83 7 1 chr6 15603207 15604122 -133912915 - L1_Mus1 LINE L1 -3 6564 5675 1 704 477 318 28 5 chr6 15604089 15604301 -133912736 - L1M2 LINE L1 -2456 3687 3471 1 704 197 65 0 31 chr6 15604309 15604341 -133912696 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 704 556 287 27 27 chr6 15604354 15604501 -133912536 - B3 SINE B2 -30 186 40 1 704 242 196 0 0 chr6 15604543 15604589 -133912448 - L1M2 LINE L1 -2719 3421 3376 1 704 868 304 118 11 chr6 15604634 15605200 -133911837 + L1MA4A LINE L1 4630 5256 -887 1 704 443 298 144 29 chr6 15605270 15605751 -133911286 + L1MA4A LINE L1 5403 5929 -374 1 704 185 315 136 51 chr6 15606022 15606236 -133910801 - L4 LINE RTE -1126 903 672 1 704 187 79 53 0 chr6 15607214 15607252 -133909785 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 1 704 239 373 45 40 chr6 15608160 15608336 -133908701 - MER5B DNA MER1_type 0 178 2 1 704 188 337 139 0 chr6 15608376 15608477 -133908560 - MIR SINE MIR 0 262 148 1 704 526 296 125 85 chr6 15608480 15608753 -133908284 - MLT1A1 LTR MaLR 0 408 125 1 704 1409 163 55 128 chr6 15608753 15609098 -133907939 + ORR1A4 LTR MaLR 1 320 -9 1 704 333 259 116 54 chr6 15609068 15609215 -133907822 - MLT1A1 LTR MaLR -209 156 1 1 704 269 314 162 0 chr6 15609688 15609793 -133907244 + B1F SINE Alu 3 124 -25 1 704 396 0 0 0 chr6 15610723 15610767 -133906270 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1 704 1040 247 132 4 chr6 15611151 15611431 -133905606 - Lx6 LINE L1 -15 7445 7130 1 704 4070 190 35 8 chr6 15611424 15612279 -133904758 - L1_Mur3 LINE L1 -2352 3528 2645 1 704 360 0 0 0 chr6 15612279 15612319 -133904718 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 704 4070 190 35 8 chr6 15612319 15612367 -133904670 - L1_Mur3 LINE L1 -3236 2644 2601 1 704 1461 295 44 17 chr6 15612360 15613359 -133903678 - L1_Mur3 LINE L1 -7029 699 46 1 704 33 25 0 0 chr6 15613652 15613692 -133903345 + AT_rich Low_complexity Low_complexity 1 40 0 1 704 525 170 130 19 chr6 15614321 15614429 -133902608 + MTC LTR MaLR 1 120 -301 1 704 19802 18 0 0 chr6 15614447 15617421 -133899616 - L1Md_T LINE L1 0 6582 3609 1 704 1776 162 29 26 chr6 15617421 15617677 -133899360 + MTC LTR MaLR 110 366 -55 1 704 2853 32 0 55 chr6 15617677 15618043 -133898994 - ORR1A0 LTR MaLR 0 346 1 1 704 1776 162 29 26 chr6 15618043 15618096 -133898941 + MTC LTR MaLR 367 420 -1 1 704 1985 301 66 33 chr6 15618559 15619321 -133897716 + Lx9 LINE L1 6448 7234 -410 1 704 2493 23 10 7 chr6 15619327 15619629 -133897408 + L1Md_F2 LINE L1 6268 6570 -12 1 704 1156 61 0 13 chr6 15619639 15619789 -133897248 + B1_Mus1 SINE Alu 1 148 0 1 704 242 39 77 0 chr6 15619789 15619841 -133897196 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 1 704 438 303 0 0 chr6 15619924 15620076 -133896961 + Lx9 LINE L1 7316 7467 -177 1 704 21 0 0 0 chr6 15620212 15620233 -133896804 + AT_rich Low_complexity Low_complexity 1 21 0 1 704 297 306 0 0 chr6 15620268 15620353 -133896684 - Lx7 LINE L1 -393 7303 7219 1 704 1314 237 10 33 chr6 15620358 15620663 -133896374 + ORR1D1 LTR MaLR 10 307 -67 1 704 582 41 0 0 chr6 15620663 15620736 -133896301 + (CATA)n Simple_repeat Simple_repeat 2 74 0 1 704 441 0 0 0 chr6 15620736 15620784 -133896253 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 704 1203 295 58 11 chr6 15620825 15621188 -133895849 - Lx7 LINE L1 -513 7183 6804 1 704 227 281 52 7 chr6 15621242 15621378 -133895659 + Lx9 LINE L1 7488 7629 -15 1 704 1275 102 0 11 chr6 15621670 15621858 -133895179 - B2_Mm2 SINE B2 -8 187 2 1 704 1625 222 11 3 chr6 15623127 15623498 -133893539 - ORR1D1 LTR MaLR 0 374 1 1 704 1420 261 66 29 chr6 15623539 15623942 -133893095 + MTD LTR MaLR 1 405 -14 1 704 392 290 60 15 chr6 15626481 15626614 -133890423 + B1F SINE Alu 6 144 -5 1 704 254 91 0 0 chr6 15628083 15628116 -133888921 - L1Md_F2 LINE L1 -563 6019 5987 1 704 3803 67 13 0 chr6 15628115 15628640 -133888397 + L1_Mm LINE L1 2820 3351 -2532 1 704 516 256 55 16 chr6 15628642 15628769 -133888268 - B4A SINE B4 -65 227 96 1 704 450 326 7 14 chr6 15628849 15628995 -133888042 - MTE-int LTR MaLR -34 1546 1402 1 704 481 184 9 9 chr6 15629043 15629158 -133887879 + CT-rich Low_complexity Low_complexity 3 117 0 1 704 503 280 8 8 chr6 15629294 15629413 -133887624 - B1_Mur1 SINE Alu -5 144 26 1 704 315 226 0 0 chr6 15629477 15629539 -133887498 - ORR1E LTR MaLR 0 379 318 1 704 505 302 16 0 chr6 15629729 15629855 -133887182 - ORR1E LTR MaLR -231 128 1 1 704 279 283 0 0 chr6 15630069 15630129 -133886908 - MTD LTR MaLR -299 120 61 1 704 351 0 0 0 chr6 15630136 15630175 -133886862 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 704 7554 75 19 7 chr6 15631288 15632362 -133884675 - L1Md_F2 LINE L1 -12 6570 5516 1 704 309 332 125 35 chr6 15632930 15633186 -133883851 - MLT1K LTR MaLR -28 567 289 1 704 35382 45 0 3 chr6 15634673 15640003 -133877034 + L1Md_T LINE L1 177 5588 -298 1 704 8344 38 0 0 chr6 15640004 15641000 -133876037 + L1Md_T LINE L1 5590 6585 0 1 704 21 0 0 0 chr6 15642300 15642321 -133874716 + AT_rich Low_complexity Low_complexity 1 21 0 2 704 227 157 20 0 chr6 15643343 15643394 -133873643 + GA-rich Low_complexity Low_complexity 2 53 0 2 704 828 292 10 38 chr6 15643689 15643981 -133873056 - Lx7 LINE L1 -333 7363 7080 2 704 12763 103 60 9 chr6 15644351 15646707 -133870330 + L1VL2 LINE L1 31 2495 -1120 2 704 450 0 0 0 chr6 15646707 15646757 -133870280 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2 704 12763 91 41 11 chr6 15646757 15647207 -133869830 + L1VL2 LINE L1 2496 2980 -635 2 704 28 29 0 0 chr6 15647371 15647406 -133869631 + AT_rich Low_complexity Low_complexity 1 35 0 2 704 402 300 52 23 chr6 15648149 15648323 -133868714 - LTR40c LTR ERVL -6 459 281 2 704 4239 46 2 0 chr6 15648762 15649279 -133867758 - L1Md_F2 LINE L1 -458 6124 5607 2 704 2249 79 145 12 chr6 15649279 15649623 -133867414 + L1Md_F2 LINE L1 6191 6580 -2 2 704 29 47 0 0 chr6 15649725 15649768 -133867269 + AT_rich Low_complexity Low_complexity 1 43 0 2 704 303 304 163 5 chr6 15649935 15650150 -133866887 + L1MC LINE L1 3023 3271 -2875 2 704 22 0 0 0 chr6 15650190 15650212 -133866825 + AT_rich Low_complexity Low_complexity 1 22 0 2 704 328 385 89 20 chr6 15651639 15651931 -133865106 - L1MC4a LINE L1 -1931 5951 5640 2 704 1467 213 71 12 chr6 15652045 15652368 -133864669 - MTD LTR MaLR -67 352 11 2 704 899 271 28 12 chr6 15652432 15652682 -133864355 - MTE2b LTR MaLR 0 379 126 2 704 254 57 36 36 chr6 15652740 15652795 -133864242 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 704 213 261 52 7 chr6 15652795 15652949 -133864088 + (TTATA)n Simple_repeat Simple_repeat 3 163 0 2 704 278 245 126 0 chr6 15652965 15653116 -133863921 - Lx9 LINE L1 -9 7635 7466 2 704 369 252 57 71 chr6 15653214 15653355 -133863682 - RSINE1 SINE B4 -18 147 9 2 704 432 331 73 0 chr6 15653368 15653492 -133863545 - MTE2b LTR MaLR -246 133 1 2 704 955 281 12 136 chr6 15654042 15654143 -133862894 + MTEa LTR MaLR 1 90 -289 2 704 191 88 29 0 chr6 15654143 15654177 -133862860 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 704 955 281 12 136 chr6 15654177 15654503 -133862534 + MTEa LTR MaLR 91 375 -4 2 704 330 193 16 0 chr6 15655234 15655323 -133861714 - L1_Mur1 LINE L1 -6231 751 676 2 704 5455 142 56 8 chr6 15655323 15656256 -133860781 + Lx3B LINE L1 5991 6968 -5 2 704 200 34 0 33 chr6 15656272 15656302 -133860735 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 704 22 0 0 0 chr6 15656369 15656391 -133860646 + AT_rich Low_complexity Low_complexity 1 22 0 2 704 269 300 149 8 chr6 15656856 15656977 -133860060 + B1F1 SINE Alu 12 149 0 2 704 517 292 133 12 chr6 15658325 15658586 -133858451 - MLT1D LTR MaLR 0 505 188 2 704 1534 251 106 3 chr6 15658631 15658999 -133858038 - MTC LTR MaLR -15 406 1 2 704 353 329 36 7 chr6 15658999 15659137 -133857900 - MLT1D LTR MaLR -355 150 9 2 704 262 170 0 21 chr6 15659811 15659859 -133857178 - ORR1D1 LTR MaLR -2 372 326 2 704 773 266 78 5 chr6 15660347 15660551 -133856486 - ORR1D1 LTR MaLR -153 221 3 2 704 297 297 152 30 chr6 15662181 15662313 -133854724 - RSINE1 SINE B4 -16 149 2 2 704 287 345 26 26 chr6 15663486 15663638 -133853399 + RSINE1 SINE B4 4 155 -10 2 704 268 245 8 117 chr6 15663679 15663799 -133853238 + MLT1A0 LTR MaLR 1 107 -258 2 704 367 202 333 9 chr6 15663817 15663922 -133853115 - MLT1A1 LTR MaLR -258 150 12 2 704 473 196 102 10 chr6 15664073 15664161 -133852876 + ORR1A2 LTR MaLR 7 103 -224 2 704 897 58 0 0 chr6 15664161 15664282 -133852755 + RLTR9B LTR ERVK 1 121 -316 2 704 1097 139 15 41 chr6 15664284 15664479 -133852558 - ETnERV2-int LTR ERVK -5162 2244 2055 2 704 591 71 0 0 chr6 15664479 15664564 -133852473 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 704 1156 139 87 149 chr6 15664586 15664907 -133852130 - RLTR45-int LTR ERVK -4852 2392 2092 2 704 832 32 40 0 chr6 15664907 15665031 -133852006 + (TC)n Simple_repeat Simple_repeat 2 130 0 2 704 29 47 0 0 chr6 15665032 15665075 -133851962 + AT_rich Low_complexity Low_complexity 1 43 0 2 704 1384 142 130 13 chr6 15665389 15665735 -133851302 - RLTR9B2 LTR ERVK 0 420 10 2 704 1294 78 6 22 chr6 15665747 15665930 -133851107 + ORR1A2 LTR MaLR 96 275 -52 2 704 306 0 0 0 chr6 15666291 15666325 -133850712 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 2 704 486 0 0 0 chr6 15666325 15666378 -133850659 + (ATAGG)n Simple_repeat Simple_repeat 2 55 0 2 704 318 137 130 52 chr6 15666378 15666532 -133850505 - RMER17C LTR ERVK -148 262 97 2 704 433 122 0 0 chr6 15666544 15666616 -133850421 + ORR1A2 LTR MaLR 255 327 0 2 704 491 304 120 42 chr6 15666731 15666947 -133850090 - B4 SINE B4 -4 288 56 2 704 1562 164 115 3 chr6 15666993 15667298 -133849739 + RMER10B LTR ERVL 1 339 -59 2 704 452 0 52 0 chr6 15667298 15667356 -133849681 + (CTAAT)n Simple_repeat Simple_repeat 2 62 0 2 704 186 255 112 41 chr6 15667748 15667846 -133849191 - MIRm SINE MIR -98 178 74 2 704 2140 180 61 100 chr6 15667969 15668511 -133848526 + RMER20B LTR ERVK 1 521 -106 2 704 231 296 174 62 chr6 15668651 15668892 -133848145 + B4 SINE B4 7 274 -18 2 704 1636 155 59 45 chr6 15669086 15669490 -133847547 + RMER17C LTR ERVK 1 410 0 2 704 441 0 0 0 chr6 15670301 15670350 -133846687 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 704 1253 34 0 0 chr6 15672593 15672739 -133844298 + B1_Mm SINE Alu 2 147 0 2 704 321 47 0 0 chr6 15672739 15672782 -133844255 + (A)n Simple_repeat Simple_repeat 1 43 0 2 704 202 290 0 104 chr6 15673319 15673396 -133843641 - L3 LINE CR1 -19 4470 4402 2 704 474 49 0 0 chr6 15673801 15673862 -133843175 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 704 576 340 9 19 chr6 15674926 15675142 -133841895 + MER20 DNA MER1_type 1 214 -5 2 704 243 61 0 0 chr6 15675847 15675880 -133841157 + (T)n Simple_repeat Simple_repeat 1 33 0 2 704 227 31 0 30 chr6 15675941 15675974 -133841063 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 2 704 189 0 0 0 chr6 15676264 15676285 -133840752 + (GGAA)n Simple_repeat Simple_repeat 1 21 0 2 704 234 0 0 0 chr6 15676462 15676488 -133840549 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 704 294 0 36 73 chr6 15677249 15677304 -133839733 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 2 704 210 143 0 0 chr6 15678068 15678103 -133838934 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2 704 1138 22 7 0 chr6 15679612 15679751 -133837286 - B1_Mm SINE Alu 0 147 8 2 704 180 0 0 0 chr6 15681455 15681475 -133835562 + (A)n Simple_repeat Simple_repeat 1 20 0 2 704 210 105 0 0 chr6 15682126 15682164 -133834873 + (T)n Simple_repeat Simple_repeat 1 38 0 2 704 198 0 0 0 chr6 15682501 15682523 -133834514 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 704 209 128 0 25 chr6 15683290 15683330 -133833707 + A-rich Low_complexity Low_complexity 3 41 0 2 704 1579 37 0 20 chr6 15683616 15683811 -133833226 - B2_Mm1a SINE B2 -1 192 2 2 704 628 254 155 32 chr6 15684206 15684458 -133832579 + B4A SINE B4 2 284 -8 2 704 510 61 0 0 chr6 15684478 15684544 -133832493 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 704 232 288 53 26 chr6 15684938 15685052 -133831985 + MIRc SINE MIR 115 231 -37 2 704 195 42 0 0 chr6 15685760 15685784 -133831253 + (GGA)n Simple_repeat Simple_repeat 2 25 0 2 704 1693 219 53 41 chr6 15687379 15687797 -133829240 - Charlie13b DNA Charlie -30 482 60 2 704 967 310 15 36 chr6 15689219 15689554 -133827483 - ORR1E LTR MaLR 0 359 32 2 704 279 192 0 0 chr6 15689594 15689672 -133827365 + CT-rich Low_complexity Low_complexity 1 78 0 2 704 603 234 57 0 chr6 15690777 15690901 -133826136 + ID_B1 SINE B4 88 218 -6 2 704 189 0 0 0 chr6 15692396 15692417 -133824620 + (TCTCTG)n Simple_repeat Simple_repeat 4 24 0 2 704 414 85 0 0 chr6 15695699 15695758 -133821279 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 704 182 325 109 48 chr6 15696387 15696552 -133820485 + MIR SINE MIR 11 185 -77 2 704 1265 169 9 0 chr6 15696915 15697134 -133819903 + URR1A DNA MER1_type 6 226 0 2 704 441 0 0 0 chr6 15698021 15698070 -133818967 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 704 369 167 99 77 chr6 15698474 15698565 -133818472 - PB1D7 SINE Alu -15 105 13 2 704 402 189 0 0 chr6 15699854 15699965 -133817072 + GA-rich Low_complexity Low_complexity 1 111 0 2 704 286 350 33 33 chr6 15699995 15700116 -133816921 - MER45A DNA Tip100 -52 126 6 2 704 306 0 0 0 chr6 15702613 15702647 -133814390 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 704 297 271 105 12 chr6 15703087 15703173 -133813864 + MER5B DNA MER1_type 66 159 -19 2 704 769 206 0 0 chr6 15704978 15705119 -133811918 - B1_Mur2 SINE Alu 0 149 9 2 704 1179 68 0 7 chr6 15705168 15705317 -133811720 - B1_Mus1 SINE Alu 0 148 1 2 704 234 0 0 0 chr6 15705657 15705683 -133811354 + (T)n Simple_repeat Simple_repeat 1 26 0 2 704 809 136 7 0 chr6 15705907 15706047 -133810990 + (TTC)n Simple_repeat Simple_repeat 2 142 0 2 704 840 111 0 0 chr6 15706613 15706739 -133810298 + (TC)n Simple_repeat Simple_repeat 1 126 0 2 704 3582 120 44 24 chr6 15706756 15707330 -133809707 - Lx LINE L1 -2 6652 6068 2 704 5364 141 25 1 chr6 15707330 15708249 -133808788 + L1_Mm LINE L1 4886 5826 -57 2 704 269 205 23 103 chr6 15708504 15708591 -133808446 + B1_Mur1 SINE Alu 50 129 -20 2 704 265 256 24 49 chr6 15711702 15711784 -133805253 + L2a LINE L2 3311 3390 -36 2 704 228 189 19 19 chr6 15712144 15712198 -133804839 + (TATG)n Simple_repeat Simple_repeat 3 56 0 2 704 232 191 31 16 chr6 15719733 15719797 -133797240 + A-rich Low_complexity Low_complexity 2 66 0 2 704 211 167 24 0 chr6 15719967 15720058 -133796979 + CT-rich Low_complexity Low_complexity 1 93 0 2 704 288 130 0 0 chr6 15723304 15723350 -133793687 + (A)n Simple_repeat Simple_repeat 1 46 0 2 704 678 243 13 26 chr6 15723715 15723867 -133793170 + B3 SINE B2 6 155 -61 3 704 373 327 29 17 chr6 15724859 15725033 -133792004 + MIR SINE MIR 21 196 -66 3 704 1218 285 20 81 chr6 15725187 15725580 -133791457 - MTE2a LTR MaLR -8 371 3 3 704 198 0 108 0 chr6 15726177 15726214 -133790823 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 704 504 50 38 0 chr6 15726290 15726370 -133790667 + (TTA)n Simple_repeat Simple_repeat 2 84 0 3 704 519 17 0 0 chr6 15727426 15727486 -133789551 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 704 405 0 0 0 chr6 15728380 15728425 -133788612 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 705 210 45 0 64 chr6 15729037 15729084 -133787953 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 705 1122 89 0 0 chr6 15729240 15729386 -133787651 + B1_Mm SINE Alu 1 146 -1 3 705 306 0 0 75 chr6 15729392 15729445 -133787592 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 705 1066 234 212 53 chr6 15729456 15729652 -133787385 - RMER15 LTR ERVL -18 557 346 3 705 417 39 0 0 chr6 15729652 15729703 -133787334 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 705 1066 234 212 53 chr6 15729703 15729921 -133787116 - RMER15 LTR ERVL -230 345 77 3 705 563 311 126 41 chr6 15730277 15730841 -133786196 - L2 LINE L2 -506 2913 2302 3 705 239 342 90 27 chr6 15730972 15731194 -133785843 - L2 LINE L2 -1149 2270 2035 3 705 450 252 47 8 chr6 15731219 15731347 -133785690 - MTEb LTR MaLR 0 379 247 3 705 450 0 0 0 chr6 15731385 15731435 -133785602 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 705 1048 262 31 8 chr6 15731480 15731741 -133785296 - MTEb LTR MaLR -109 270 4 3 705 333 0 0 0 chr6 15732018 15732055 -133784982 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 705 183 139 0 0 chr6 15732055 15732091 -133784946 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 705 210 180 0 0 chr6 15732334 15732395 -133784642 + A-rich Low_complexity Low_complexity 1 61 0 3 705 3855 161 18 9 chr6 15732399 15733064 -133783973 - RLTR17 LTR ERVK -21 671 1 3 705 468 62 0 0 chr6 15733300 15733364 -133783673 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 705 453 305 77 69 chr6 15733478 15733855 -133783182 + Charlie4a DNA MER1_type 50 429 -79 3 705 614 314 14 81 chr6 15735124 15735335 -133781702 + B3A SINE B2 2 198 0 3 705 213 250 50 10 chr6 15735424 15735525 -133781512 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 3 705 259 299 13 4 chr6 15736153 15736391 -133780646 + (TG)n Simple_repeat Simple_repeat 1 240 0 3 705 848 115 14 0 chr6 15736623 15736762 -133780275 + (TTTC)n Simple_repeat Simple_repeat 2 142 0 3 705 378 280 75 8 chr6 15736777 15736910 -133780127 - RMER15 LTR ERVL -2 573 432 3 705 183 240 19 39 chr6 15738091 15738143 -133778894 + L2a LINE L2 3368 3418 -8 3 705 486 316 124 14 chr6 15738524 15738742 -133778295 + B4A SINE B4 29 270 -22 3 705 288 102 0 0 chr6 15738786 15738835 -133778202 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 705 291 220 0 0 chr6 15738826 15738917 -133778120 + (CA)n Simple_repeat Simple_repeat 2 92 0 3 705 341 333 106 7 chr6 15738957 15739099 -133777938 + B3A SINE B2 4 159 -39 3 705 420 143 0 0 chr6 15739108 15739192 -133777845 + (TCTCTG)n Simple_repeat Simple_repeat 2 85 0 3 705 32 67 0 0 chr6 15739193 15739253 -133777784 + AT_rich Low_complexity Low_complexity 1 60 0 3 705 198 341 21 86 chr6 15739389 15739482 -133777555 - MIR SINE MIR -92 116 30 3 705 297 75 0 0 chr6 15740609 15740649 -133776388 + (CAT)n Simple_repeat Simple_repeat 2 41 0 3 705 378 0 0 0 chr6 15741010 15741052 -133775985 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 705 513 246 73 0 chr6 15741053 15741163 -133775874 - RSINE1 SINE B4 -31 134 17 3 705 245 242 16 0 chr6 15741655 15741717 -133775320 + (CCA)n Simple_repeat Simple_repeat 3 65 0 3 705 431 319 22 7 chr6 15741916 15742055 -133774982 + RSINE1 SINE B4 3 143 -22 3 705 477 0 0 0 chr6 15742059 15742112 -133774925 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 705 293 162 15 0 chr6 15744395 15744463 -133772574 + T-rich Low_complexity Low_complexity 2 70 0 3 705 1210 73 11 11 chr6 15744470 15744649 -133772388 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 3 705 215 317 50 0 chr6 15744655 15744715 -133772322 - PB1D7 SINE Alu -13 107 45 3 705 2390 57 0 0 chr6 15746788 15747087 -133769950 - L1_Mus1 LINE L1 0 6567 6269 3 705 373 289 32 26 chr6 15747087 15747210 -133769827 - PB1D7 SINE Alu 0 120 2 3 705 232 245 56 122 chr6 15747124 15747231 -133769806 - MT2B LTR ERVL -361 240 141 3 705 400 234 75 0 chr6 15747548 15747642 -133769395 - PB1D10 SINE Alu -8 109 9 3 705 312 231 0 44 chr6 15748513 15748581 -133768456 + ID2 SINE ID 6 70 -13 3 705 28 0 0 0 chr6 15751477 15751505 -133765532 + AT_rich Low_complexity Low_complexity 1 28 0 3 705 25 75 0 0 chr6 15752192 15752245 -133764792 + AT_rich Low_complexity Low_complexity 1 53 0 3 705 223 298 10 41 chr6 15752448 15752546 -133764491 + CT-rich Low_complexity Low_complexity 4 98 0 3 705 186 174 0 0 chr6 15752961 15753007 -133764030 + T-rich Low_complexity Low_complexity 1 46 0 3 705 1121 80 0 0 chr6 15753879 15754030 -133763007 + L1_Mus2 LINE L1 6410 6560 -6 3 705 505 299 63 13 chr6 15754081 15754240 -133762797 + B3A SINE B2 2 168 -30 3 705 1285 7 13 0 chr6 15754274 15754428 -133762609 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 3 705 21 36 0 0 chr6 15754926 15754954 -133762083 + AT_rich Low_complexity Low_complexity 1 28 0 3 705 227 273 51 72 chr6 15757659 15757797 -133759240 - MIRc SINE MIR -13 255 121 3 705 230 325 74 70 chr6 15758413 15758628 -133758409 + LTR33 LTR ERVL 297 512 -3 3 705 2364 90 14 19 chr6 15758693 15759054 -133757983 - L1_Mus3 LINE L1 -5 6633 6275 3 705 229 372 26 0 chr6 15759621 15759699 -133757338 + B4 SINE B4 132 211 -81 3 705 3174 87 29 2 chr6 15759701 15760153 -133756884 - MT2C_Mm LTR ERVL -11 464 1 3 705 371 282 12 0 chr6 15760153 15760237 -133756800 + B4 SINE B4 206 290 -2 3 705 40 73 0 0 chr6 15761779 15761861 -133755176 + AT_rich Low_complexity Low_complexity 1 82 0 3 705 186 68 91 0 chr6 15761959 15762003 -133755034 + T-rich Low_complexity Low_complexity 4 51 0 3 705 29 28 0 0 chr6 15764056 15764092 -133752945 + AT_rich Low_complexity Low_complexity 1 36 0 3 705 452 343 44 7 chr6 15765688 15765823 -133751214 - B3 SINE B2 -30 186 47 3 705 292 292 91 15 chr6 15766303 15766435 -133750602 + B4A SINE B4 142 283 -9 3 705 350 368 123 17 chr6 15767455 15767690 -133749347 - LTR80A LTR ERVL -244 339 80 3 705 293 188 12 0 chr6 15767945 15768025 -133749012 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 705 457 362 53 50 chr6 15768130 15768467 -133748570 - LTR40b LTR ERVL -34 428 91 3 705 297 235 176 0 chr6 15768877 15768962 -133748075 - B1F1 SINE Alu -7 142 43 3 705 369 0 0 0 chr6 15769847 15769888 -133747149 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 705 1902 135 27 0 chr6 15769978 15770274 -133746763 - Lx3_Mus LINE L1 -48 6961 6658 3 705 635 243 29 70 chr6 15770446 15770616 -133746421 + B3A SINE B2 38 207 -9 3 705 330 343 68 32 chr6 15770625 15770834 -133746203 - L2a LINE L2 -201 3225 3008 3 705 346 0 61 0 chr6 15770834 15770883 -133746154 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 3 705 378 312 109 14 chr6 15770940 15771288 -133745749 - Charlie1 DNA MER1_type -63 2718 2338 3 705 249 266 125 0 chr6 15771299 15771363 -133745674 + B3A SINE B2 7 78 -120 3 705 542 15 0 15 chr6 15771861 15771929 -133745108 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 3 705 22 70 0 0 chr6 15772783 15772826 -133744211 + AT_rich Low_complexity Low_complexity 1 43 0 3 705 270 0 0 0 chr6 15774951 15774981 -133742056 + (T)n Simple_repeat Simple_repeat 1 30 0 3 705 522 278 91 30 chr6 15776861 15777058 -133739979 + B3 SINE B2 2 210 -6 3 705 25 31 0 0 chr6 15777060 15777092 -133739945 + AT_rich Low_complexity Low_complexity 1 32 0 3 705 367 217 145 17 chr6 15777121 15777238 -133739799 + B1F SINE Alu 17 148 -1 3 705 26 0 0 0 chr6 15777649 15777675 -133739362 + AT_rich Low_complexity Low_complexity 1 26 0 3 705 525 374 66 91 chr6 15778275 15778702 -133738335 + MLT1D LTR MaLR 1 416 -89 3 705 389 232 87 92 chr6 15779620 15779815 -133737222 - B3A SINE B2 -4 194 1 3 705 477 78 12 38 chr6 15780069 15780149 -133736888 + RMER19C LTR ERVK 1 78 -533 3 705 545 134 0 0 chr6 15780133 15780215 -133736822 + RMER19C LTR ERVK 530 611 0 3 705 353 323 202 5 chr6 15781449 15781642 -133735395 - MLT1A LTR MaLR -77 297 67 3 705 4113 200 29 20 chr6 15781762 15783024 -133734013 + Lx6 LINE L1 5250 6540 -920 3 705 1939 262 46 16 chr6 15783021 15783830 -133733207 - RMER1B Other Other -344 722 2 3 705 1505 235 3 3 chr6 15784126 15784416 -133732621 + Lx6 LINE L1 7133 7422 -38 3 705 308 257 9 87 chr6 15784450 15784565 -133732472 - RMER1C Other Other 0 1342 1237 3 705 420 20 0 0 chr6 15784580 15784629 -133732408 + (CAAAC)n Simple_repeat Simple_repeat 2 50 0 3 705 3135 28 8 0 chr6 15784629 15785017 -133732020 + MTA_Mm LTR MaLR 6 396 0 3 705 641 61 20 0 chr6 15785017 15785115 -133731922 + (CAAAC)n Simple_repeat Simple_repeat 5 104 0 3 705 1018 262 98 32 chr6 15785116 15785495 -133731542 - RMER1C Other Other -116 1226 823 3 705 247 361 10 0 chr6 15785547 15785644 -133731393 - RMER1C Other Other -1217 125 28 3 705 711 35 0 0 chr6 15786381 15786467 -133730570 + (TC)n Simple_repeat Simple_repeat 1 86 0 3 705 305 192 0 0 chr6 15786467 15786519 -133730518 + HAL1-3A_ME LINE L1 1976 2027 -831 3 705 972 301 18 4 chr6 15786618 15786895 -133730142 - Lx7 LINE L1 -397 7299 7019 3 705 1711 284 17 15 chr6 15786909 15787387 -133729650 + Lx7 LINE L1 6465 6943 -753 3 705 25 51 0 0 chr6 15787606 15787645 -133729392 + AT_rich Low_complexity Low_complexity 1 39 0 3 705 275 315 32 32 chr6 15788276 15788371 -133728666 - MER5B DNA MER1_type -81 97 3 3 705 401 268 16 8 chr6 15788833 15788957 -133728080 + Tigger7 DNA MER2_type 2269 2393 -98 4 705 907 193 50 0 chr6 15788974 15789155 -133727882 - Lx9 LINE L1 -283 7361 7172 4 705 597 52 0 0 chr6 15789480 15789557 -133727480 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 705 296 312 63 18 chr6 15791152 15791263 -133725774 + PB1D10 SINE Alu 2 117 0 4 705 214 355 50 19 chr6 15791354 15791531 -133725506 - MIR SINE MIR -67 201 17 4 705 213 39 0 0 chr6 15791797 15791823 -133725214 + (T)n Simple_repeat Simple_repeat 1 26 0 4 705 871 84 142 57 chr6 15792165 15792341 -133724696 - B2_Mm2 SINE B2 -4 191 1 4 705 2803 44 9 0 chr6 15792488 15792831 -133724206 + ORR1A1 LTR MaLR 1 346 0 4 705 336 94 0 0 chr6 15792955 15793008 -133724029 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 4 705 780 54 138 0 chr6 15793534 15793664 -133723373 + L1_Mus4 LINE L1 6483 6630 -6 4 705 225 159 0 87 chr6 15793688 15793757 -133723280 + Lx9 LINE L1 7561 7623 -21 4 705 273 259 25 0 chr6 15793777 15793858 -133723179 - L1MB7 LINE L1 -38 6146 6064 4 705 267 54 0 0 chr6 15794015 15794052 -133722985 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 705 932 160 11 0 chr6 15794094 15794269 -133722768 + CT-rich Low_complexity Low_complexity 2 178 0 4 705 228 178 89 0 chr6 15794413 15794458 -133722579 + B1_Mur3 SINE Alu 76 124 -25 4 705 286 278 133 0 chr6 15794672 15794762 -133722275 + MTEb LTR MaLR 278 379 0 4 705 725 203 222 51 chr6 15794855 15795089 -133721948 - ORR1C2 LTR MaLR -110 274 1 4 705 287 329 100 0 chr6 15795376 15795516 -133721521 + B4 SINE B4 1 154 -138 4 705 369 0 0 0 chr6 15795616 15795657 -133721380 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 705 389 363 47 68 chr6 15795927 15796205 -133720832 + LTR33A_ LTR ERVL 83 354 -177 4 705 261 0 0 0 chr6 15796205 15796234 -133720803 + (T)n Simple_repeat Simple_repeat 1 29 0 4 705 984 277 58 20 chr6 15796995 15797341 -133719696 + ORR1D1 LTR MaLR 2 360 -14 4 705 321 296 34 17 chr6 15797551 15797668 -133719369 - PB1D7 SINE Alu -1 119 1 4 705 189 224 0 0 chr6 15798050 15798108 -133718929 + T-rich Low_complexity Low_complexity 1 58 0 4 705 477 50 0 0 chr6 15798972 15799032 -133718005 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 705 486 315 124 73 chr6 15799048 15799322 -133717715 - B4A SINE B4 0 292 5 4 705 191 78 78 0 chr6 15800458 15800509 -133716528 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 705 2896 299 54 24 chr6 15800670 15801630 -133715407 - Lx8 LINE L1 -9 7464 6476 4 705 1896 105 51 26 chr6 15801683 15801996 -133715041 - ORR1A4 LTR MaLR -8 321 1 4 705 507 316 51 6 chr6 15801996 15802152 -133714885 - Lx8 LINE L1 -1103 6370 6208 4 705 1217 224 46 59 chr6 15803006 15803377 -133713660 + BGLII_B LTR ERVK 76 441 0 4 705 205 213 0 21 chr6 15803461 15803509 -133713528 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 4 705 684 184 305 60 chr6 15803608 15803843 -133713194 - Lx9 LINE L1 -9 7635 7345 4 705 4292 29 6 4 chr6 15803843 15804363 -133712674 - L1Md_F3 LINE L1 -1 6583 6063 4 705 1200 232 306 3 chr6 15804363 15804661 -133712376 - Lx9 LINE L1 -300 7344 6955 4 705 227 239 0 49 chr6 15804661 15804784 -133712253 + (TATG)n Simple_repeat Simple_repeat 4 120 0 4 705 312 313 0 0 chr6 15804789 15805051 -133711986 + (TG)n Simple_repeat Simple_repeat 1 262 0 4 705 378 277 128 51 chr6 15805052 15805208 -133711829 - B3A SINE B2 -17 181 14 4 705 468 51 0 0 chr6 15806461 15806520 -133710517 + (TAA)n Simple_repeat Simple_repeat 2 60 0 4 705 393 335 122 0 chr6 15806560 15806757 -133710280 - MTD LTR MaLR -2 417 197 4 705 1111 102 0 0 chr6 15807185 15807332 -133709705 - B1_Mus1 SINE Alu -1 147 1 4 705 539 376 37 5 chr6 15807476 15807666 -133709371 - B4A SINE B4 -96 196 1 4 705 3450 18 5 0 chr6 15807786 15808179 -133708858 + MTA_Mm LTR MaLR 1 395 -1 4 705 434 219 16 88 chr6 15808242 15808367 -133708670 + Lx9 LINE L1 6963 7078 -566 4 705 440 289 102 63 chr6 15809447 15809702 -133707335 - B4A SINE B4 -24 268 4 4 705 222 118 0 0 chr6 15809899 15809933 -133707104 + (ATG)n Simple_repeat Simple_repeat 1 34 0 4 705 668 269 63 23 chr6 15809933 15810108 -133706929 - B3A SINE B2 -16 182 1 4 705 24 0 0 0 chr6 15810815 15810839 -133706198 + AT_rich Low_complexity Low_complexity 1 24 0 4 705 408 298 32 16 chr6 15810862 15810985 -133706052 + RSINE1 SINE B4 33 157 -8 4 705 961 112 22 0 chr6 15811138 15811297 -133705740 - B2_Mm2 SINE B2 -8 185 2 4 705 719 320 98 29 chr6 15811597 15811912 -133705125 - RCHARR1 DNA MER1_type -605 369 33 4 705 229 321 17 73 chr6 15812210 15812388 -133704649 + CT-rich Low_complexity Low_complexity 4 171 0 4 705 2477 83 102 3 chr6 15813367 15813740 -133703297 - RLTR10A LTR ERVK -1 410 1 4 705 962 167 0 0 chr6 15813852 15814008 -133703029 + B2_Mm2 SINE B2 3 158 -37 4 705 237 83 0 0 chr6 15814010 15814046 -133702991 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 4 705 360 0 0 0 chr6 15816183 15816223 -133700814 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 705 333 0 0 0 chr6 15817132 15817169 -133699868 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 705 419 326 76 123 chr6 15817171 15817472 -133699565 - B4 SINE B4 -4 288 2 4 705 447 379 6 0 chr6 15817877 15818051 -133698986 + MER5B DNA MER1_type 2 176 -2 4 705 378 91 0 0 chr6 15818457 15818512 -133698525 + (CCA)n Simple_repeat Simple_repeat 1 55 0 4 705 228 67 0 0 chr6 15820462 15820492 -133696545 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 705 418 273 78 71 chr6 15821043 15821197 -133695840 - RSINE1 SINE B4 0 165 11 4 705 379 307 32 97 chr6 15821330 15821485 -133695552 - B4A SINE B4 -145 147 3 4 705 366 232 88 9 chr6 15821506 15821619 -133695418 - Helitron2Na_Mam RC Helitron? -183 141 20 4 705 1279 176 106 47 chr6 15823369 15823665 -133693372 - Lx5 LINE L1 -777 6273 5958 4 705 2978 83 5 0 chr6 15823665 15824063 -133692974 + MTB LTR MaLR 1 400 0 4 705 1279 176 106 47 chr6 15824063 15824088 -133692949 - Lx5 LINE L1 -1093 5957 5933 4 705 406 138 54 54 chr6 15824087 15824179 -133692858 - Lx5 LINE L1 -1293 5757 5666 4 705 1934 181 34 3 chr6 15824175 15824530 -133692507 + Lx5 LINE L1 6250 6615 -435 4 705 4627 40 0 0 chr6 15824534 15825088 -133691949 + L1Md_T LINE L1 6029 6582 0 4 705 225 0 0 0 chr6 15825280 15825305 -133691732 + (A)n Simple_repeat Simple_repeat 1 25 0 4 705 2030 231 76 0 chr6 15825305 15825711 -133691326 + Lx5 LINE L1 6607 7043 -7 4 705 327 130 0 0 chr6 15825854 15825908 -133691129 + (GAAAA)n Simple_repeat Simple_repeat 5 58 0 4 705 2205 122 30 0 chr6 15826292 15826628 -133690409 + Lx3_Mus LINE L1 6656 7001 -8 4 705 21 0 0 0 chr6 15826662 15826683 -133690354 + AT_rich Low_complexity Low_complexity 1 21 0 4 705 227 273 0 3 chr6 15826810 15826862 -133690175 - PB1 SINE Alu -49 68 18 4 705 560 179 113 0 chr6 15827155 15827261 -133689776 + B1_Mus2 SINE Alu 27 144 -3 4 705 1053 167 60 0 chr6 15827261 15827477 -133689560 + Lx2A1 LINE L1 6780 7008 0 4 705 213 65 0 0 chr6 15827791 15827822 -133689215 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4 705 1391 193 30 160 chr6 15828519 15828945 -133688092 - ORR1D1 LTR MaLR -3 371 1 4 705 24 0 0 0 chr6 15829665 15829689 -133687348 + AT_rich Low_complexity Low_complexity 1 24 0 4 705 582 325 103 12 chr6 15829742 15829985 -133687052 + B4A SINE B4 26 290 -2 4 705 192 125 0 0 chr6 15831492 15831524 -133685513 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 705 414 312 14 34 chr6 15831684 15831830 -133685207 - ORR1E LTR MaLR -1 378 236 4 705 460 319 26 21 chr6 15831905 15832094 -133684943 - ORR1E LTR MaLR -167 192 3 4 705 1629 42 0 0 chr6 15833695 15833887 -133683150 + B2_Mm1t SINE B2 2 193 0 4 705 679 207 74 5 chr6 15834853 15835042 -133681995 - Lx7 LINE L1 -138 7558 7357 4 705 434 206 48 10 chr6 15835095 15835198 -133681839 - MusHAL1 LINE L1 -812 1900 1794 4 705 1627 195 133 19 chr6 15835249 15835420 -133681617 - Lx4B LINE L1 -3 7047 6833 4 705 288 0 0 0 chr6 15835420 15835452 -133681585 + (TGGGGG)n Simple_repeat Simple_repeat 6 37 0 4 705 1627 190 93 18 chr6 15835452 15835702 -133681335 - Lx4B LINE L1 -203 6855 6583 4 705 814 315 31 39 chr6 15835889 15836103 -133680934 + MLT1C LTR MaLR 4 210 -257 4 705 495 0 0 0 chr6 15836103 15836158 -133680879 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 705 814 315 31 39 chr6 15836158 15836300 -133680737 + MLT1C LTR MaLR 211 357 -110 4 705 264 127 0 0 chr6 15836396 15836451 -133680586 + (CAAAAA)n Simple_repeat Simple_repeat 3 57 0 4 705 494 279 7 7 chr6 15836966 15837107 -133679930 + L1MB7 LINE L1 4870 5010 -1136 4 705 667 259 14 0 chr6 15837249 15837392 -133679645 + B1_Mur2 SINE Alu 5 149 0 4 705 350 71 0 77 chr6 15837614 15837705 -133679332 + (TAA)n Simple_repeat Simple_repeat 2 85 0 4 705 426 167 0 0 chr6 15837713 15837821 -133679216 + A-rich Low_complexity Low_complexity 1 108 0 4 705 499 285 90 11 chr6 15837839 15838116 -133678921 + L1MB7 LINE L1 5545 5843 -341 4 705 329 365 38 38 chr6 15838139 15838404 -133678633 + L1MB7 LINE L1 5913 6177 -1 4 705 22 0 0 0 chr6 15838745 15838767 -133678270 + AT_rich Low_complexity Low_complexity 1 22 0 4 705 24 0 0 0 chr6 15838905 15838929 -133678108 + AT_rich Low_complexity Low_complexity 1 24 0 4 705 227 304 43 11 chr6 15839200 15839293 -133677744 - Tigger7 DNA MER2_type -37 2454 2359 4 705 498 277 103 44 chr6 15839308 15839512 -133677525 - B3 SINE B2 0 216 1 4 705 218 271 0 14 chr6 15839539 15839610 -133677427 + CT-rich Low_complexity Low_complexity 3 72 0 4 705 206 95 24 0 chr6 15840884 15840926 -133676111 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 705 4688 73 8 2 chr6 15840945 15841564 -133675473 - L1_Mus1 LINE L1 0 6567 5945 4 705 218 204 0 18 chr6 15842431 15842486 -133674551 + (TCTCTG)n Simple_repeat Simple_repeat 5 58 0 4 705 932 221 120 9 chr6 15844909 15845142 -133671895 - Lx6 LINE L1 -3 7457 7199 4 705 634 244 0 0 chr6 15845165 15845300 -133671737 - Lx6 LINE L1 -376 7084 6950 4 705 33 43 0 0 chr6 15845717 15845764 -133671273 + AT_rich Low_complexity Low_complexity 1 47 0 5 705 797 98 0 36 chr6 15845914 15846052 -133670985 - Lx LINE L1 0 6654 6522 5 705 2424 99 52 40 chr6 15846052 15846453 -133670584 + Lx LINE L1 5711 6116 -538 5 705 234 0 0 0 chr6 15846461 15846487 -133670550 + (T)n Simple_repeat Simple_repeat 1 26 0 5 705 880 59 8 0 chr6 15846487 15846605 -133670432 - B1_Mus2 SINE Alu 0 147 29 5 705 399 210 59 20 chr6 15846614 15846716 -133670321 - MLT1D LTR MaLR -322 183 78 5 705 197 230 40 67 chr6 15846849 15846941 -133670096 - MIRb SINE MIR -34 228 135 5 705 2753 84 8 13 chr6 15847213 15847609 -133669428 + L1_Mus3 LINE L1 6238 6631 -7 5 705 407 333 92 26 chr6 15849698 15849969 -133667068 + B4A SINE B4 2 290 -2 5 705 1008 133 0 0 chr6 15849985 15850165 -133666872 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 705 1929 132 113 36 chr6 15851602 15852043 -133664994 + IAPLTR2_Mm LTR ERVK 1 475 0 5 705 26 0 0 0 chr6 15853561 15853587 -133663450 + AT_rich Low_complexity Low_complexity 1 26 0 5 705 615 229 21 0 chr6 15853628 15853772 -133663265 + B1_Mus2 SINE Alu 1 147 0 5 705 180 163 0 0 chr6 15853945 15853988 -133663049 + (TTA)n Simple_repeat Simple_repeat 2 44 0 5 705 340 319 48 28 chr6 15854551 15854696 -133662341 + L2a LINE L2 3279 3426 0 5 705 32 0 0 0 chr6 15854921 15854953 -133662084 + AT_rich Low_complexity Low_complexity 1 32 0 5 705 621 40 0 0 chr6 15855353 15855429 -133661608 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 5 705 1030 283 19 19 chr6 15855800 15856056 -133660981 + RLTR20B1 LTR ERVK 26 281 -282 5 705 558 198 0 10 chr6 15856042 15856139 -133660898 - ORR1D1 LTR MaLR -276 98 3 5 705 236 326 61 0 chr6 15857485 15857583 -133659454 - MIRb SINE MIR -147 121 18 5 705 210 37 0 0 chr6 15857947 15857974 -133659063 + (A)n Simple_repeat Simple_repeat 1 27 0 5 705 216 298 50 50 chr6 15858452 15858551 -133658486 + MIR SINE MIR 99 197 -65 5 705 420 369 92 51 chr6 15858617 15858911 -133658126 - MTEa LTR MaLR -52 327 22 5 705 212 0 36 0 chr6 15859668 15859696 -133657341 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 706 578 193 6 0 chr6 15860211 15860387 -133656650 + (TG)n Simple_repeat Simple_repeat 1 177 0 5 706 459 223 0 0 chr6 15860416 15860770 -133656267 + (TG)n Simple_repeat Simple_repeat 1 354 0 5 706 448 202 4 29 chr6 15860798 15861046 -133655991 + (TG)n Simple_repeat Simple_repeat 1 241 0 5 706 260 247 0 22 chr6 15861243 15861334 -133655703 + CT-rich Low_complexity Low_complexity 4 92 0 5 706 271 387 0 0 chr6 15862039 15862132 -133654905 - ID4 SINE ID -59 93 1 5 706 1830 69 12 0 chr6 15862334 15862581 -133654456 + L1Md_F2 LINE L1 6333 6582 0 5 706 5116 89 9 7 chr6 15864172 15864905 -133652132 - L1_Mus2 LINE L1 0 6566 5832 5 706 1985 42 0 0 chr6 15864910 15865148 -133651889 + L1_Mus2 LINE L1 5588 5825 -741 5 706 303 224 0 0 chr6 15865401 15865459 -133651578 - ORR1A4 LTR MaLR -271 58 1 5 706 216 0 0 0 chr6 15866505 15866529 -133650508 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 706 3538 124 62 4 chr6 15866943 15867495 -133649542 + MT2B2 LTR ERVL 1 584 0 5 706 288 295 154 44 chr6 15867723 15867950 -133649087 - MamRep1161 DNA TcMar -469 488 237 5 706 836 100 8 0 chr6 15868420 15868540 -133648497 + ORR1A4 LTR MaLR 207 327 -2 5 706 9233 170 23 100 chr6 15868542 15870669 -133646368 + ORR1A4-int LTR MaLR 1 1963 0 5 706 1882 94 96 77 chr6 15870669 15870992 -133646045 + ORR1A4 LTR MaLR 1 329 0 5 706 933 284 21 8 chr6 15870994 15871232 -133645805 - B4 SINE B4 -48 244 4 5 706 279 0 0 0 chr6 15871444 15871475 -133645562 + (T)n Simple_repeat Simple_repeat 1 31 0 5 706 356 276 153 0 chr6 15871517 15871615 -133645422 + B3 SINE B2 1 113 -103 5 706 232 319 59 27 chr6 15871846 15872068 -133644969 - L1M5 LINE L1 -676 5518 5290 5 706 263 28 28 0 chr6 15874262 15874298 -133642739 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 706 222 91 0 0 chr6 15874298 15874331 -133642706 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 5 706 2869 27 0 3 chr6 15874982 15875320 -133641717 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 706 7224 91 18 5 chr6 15876664 15877983 -133639054 - L1_Mus3 LINE L1 -5 6633 5303 5 706 7898 119 11 11 chr6 15877979 15878559 -133638478 + L1_Mm LINE L1 4062 4638 -1245 5 706 258 32 0 0 chr6 15878559 15878590 -133638447 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 706 7898 119 11 11 chr6 15878590 15879248 -133637789 + L1_Mm LINE L1 4639 5300 -583 5 706 393 226 11 45 chr6 15879372 15879460 -133637577 + B3 SINE B2 113 197 -19 5 706 432 0 0 0 chr6 15879580 15879628 -133637409 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 706 763 249 74 10 chr6 15879666 15879869 -133637168 - B3 SINE B2 0 216 1 5 706 339 281 65 16 chr6 15879930 15880053 -133636984 + MER67D LTR ERV1 29 157 -357 5 706 330 330 171 17 chr6 15880071 15880247 -133636790 + MER67D LTR ERV1 232 434 -80 5 706 258 297 0 0 chr6 15882322 15882444 -133634593 + (CA)n Simple_repeat Simple_repeat 1 122 0 5 706 267 93 0 0 chr6 15883692 15883735 -133633302 + (CAA)n Simple_repeat Simple_repeat 1 43 0 5 706 397 288 0 0 chr6 15883976 15884084 -133632953 - PB1D9 SINE Alu -1 119 12 5 706 338 306 36 9 chr6 15884085 15884197 -133632840 - B3A SINE B2 -83 115 1 5 706 297 294 0 32 chr6 15884280 15884375 -133632662 + CT-rich Low_complexity Low_complexity 4 95 0 5 706 633 47 0 0 chr6 15886051 15886136 -133630901 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 706 608 101 0 0 chr6 15887758 15887847 -133629190 + Lx2 LINE L1 6555 6643 -354 5 706 1400 139 0 0 chr6 15887847 15888070 -133628967 + Lx2 LINE L1 6775 6997 0 5 706 1743 271 55 50 chr6 15888479 15889172 -133627865 + MYSERV6-int LTR ERVK 3769 4615 -4344 5 706 368 226 0 23 chr6 15889149 15889235 -133627802 + MYSERV-int LTR ERVK 4483 4566 -1984 5 706 829 246 25 66 chr6 15889485 15889837 -133627200 + MYSERV16_I-int LTR ERVK 500 758 -1568 5 706 422 312 39 91 chr6 15889838 15890046 -133626991 + RMER4A LTR ERVK 241 437 -29 5 706 951 199 85 15 chr6 15890048 15890319 -133626718 + MYSERV6-int LTR ERVK 7769 8058 -901 5 706 2154 212 91 13 chr6 15890325 15890851 -133626186 + MYSERV6-int LTR ERVK 8393 8959 0 5 706 588 259 69 33 chr6 15890851 15891126 -133625911 + RLTR15 LTR ERVK 1 285 -74 5 706 5801 174 88 2 chr6 15891126 15892252 -133624785 + Lx2B LINE L1 5772 6994 -6 5 706 488 343 89 33 chr6 15892416 15892808 -133624229 + L1M5 LINE L1 5392 5805 -374 5 706 243 0 0 0 chr6 15895702 15895729 -133621308 + (A)n Simple_repeat Simple_repeat 1 27 0 5 706 195 129 0 0 chr6 15896891 15896922 -133620115 + (T)n Simple_repeat Simple_repeat 1 31 0 5 706 1009 51 58 0 chr6 15896922 15897060 -133619977 - B1_Mus2 SINE Alu 0 147 2 5 706 1303 205 65 31 chr6 15897454 15897776 -133619261 - RMER1C Other Other 0 1342 1010 5 706 249 283 0 0 chr6 15897777 15897837 -133619200 + RMER1C Other Other 922 981 -361 5 706 4622 153 31 4 chr6 15898083 15898294 -133618743 + Lx2B LINE L1 6177 6387 -613 5 706 225 0 0 0 chr6 15898294 15898319 -133618718 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 706 4622 153 31 4 chr6 15898319 15898903 -133618134 + Lx2B LINE L1 6388 6992 -8 5 706 361 288 105 48 chr6 15899163 15899802 -133617235 + L1MD LINE L1 4772 5450 -909 5 706 426 85 0 0 chr6 15900025 15900084 -133616953 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 706 237 33 0 0 chr6 15900084 15900114 -133616923 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 706 576 335 62 48 chr6 15900353 15900626 -133616411 - RMER15 LTR ERVL 0 575 299 5 706 215 233 0 0 chr6 15903755 15903798 -133613239 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 5 706 29 0 0 0 chr6 15904239 15904268 -133612769 + AT_rich Low_complexity Low_complexity 1 29 0 5 706 308 336 52 52 chr6 15904462 15904616 -133612421 - RSINE1 SINE B4 0 165 12 5 706 693 296 137 49 chr6 15904785 15904870 -133612167 + MER63C DNA AcHobo 3 95 -835 5 706 2243 116 15 3 chr6 15904870 15905200 -133611837 + L1_Mus4 LINE L1 6302 6635 -1 5 706 693 300 133 57 chr6 15905200 15905830 -133611207 + MER63C DNA AcHobo 96 739 -191 5 706 216 143 0 0 chr6 15906296 15906338 -133610699 + (CCCTAA)n Simple_repeat Simple_repeat 5 46 0 5 706 361 245 0 67 chr6 15906987 15907060 -133609977 + MT2A LTR ERVL 86 156 -377 5 706 258 32 0 0 chr6 15907060 15907091 -133609946 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 706 361 245 0 67 chr6 15907091 15907122 -133609915 + MT2A LTR ERVL 157 183 -350 5 706 6693 120 27 0 chr6 15907131 15908125 -133608912 - Lx LINE L1 -14 6640 5620 5 706 12530 94 13 8 chr6 15908121 15909702 -133607335 - L1VL4 LINE L1 -806 2753 1162 5 706 5197 103 27 45 chr6 15909702 15910525 -133606512 - RLTR13C2 LTR ERVK 0 808 1 5 706 12530 142 18 23 chr6 15910525 15911464 -133605573 - L1VL4 LINE L1 -2398 1161 231 5 706 797 316 13 43 chr6 15911468 15911769 -133605268 + MT2A LTR ERVL 169 460 -73 5 706 428 143 12 0 chr6 15911921 15912005 -133605032 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 706 529 356 76 11 chr6 15912648 15912912 -133604125 + B4 SINE B4 2 282 -10 5 706 1517 113 21 17 chr6 15913933 15914167 -133602870 - L1_Mus4 LINE L1 0 6567 6333 5 706 372 100 0 0 chr6 15914193 15914243 -133602794 - 5S rRNA rRNA -71 50 1 5 706 6119 68 8 12 chr6 15914244 15915045 -133601992 + L1_Mus2 LINE L1 5649 6445 -121 5 706 1167 127 15 5 chr6 15915043 15915241 -133601796 - L1_Mus3 LINE L1 -45 6593 6394 5 706 2517 76 3 12 chr6 15915254 15915600 -133601437 - L1_Mus4 LINE L1 -665 5971 5629 5 706 504 0 0 0 chr6 15916782 15916838 -133600199 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 706 840 251 5 14 chr6 15917354 15917564 -133599473 + B3 SINE B2 3 210 -6 5 706 440 331 121 42 chr6 15918529 15918860 -133598177 + MLT1D LTR MaLR 30 386 -119 5 706 1323 32 0 0 chr6 15919337 15919494 -133597543 - L1_Mm LINE L1 -1057 4826 4670 5 706 466 299 29 0 chr6 15919871 15920008 -133597029 - MLT1D LTR MaLR -360 145 5 5 706 3257 53 7 2 chr6 15921059 15921471 -133595566 - L1Md_F2 LINE L1 -3 6579 6166 5 706 4035 119 3 17 chr6 15921653 15922285 -133594752 - L1_Mus3 LINE L1 -4 6634 6012 5 706 6589 146 19 2 chr6 15922285 15923384 -133593653 - L1_Mm LINE L1 -561 5322 4205 5 706 1697 153 66 0 chr6 15923708 15924009 -133593028 + ORR1A4 LTR MaLR 1 321 -8 5 706 1474 280 78 28 chr6 15924532 15925475 -133591562 - RMER1A Other Other -498 568 9 5 706 22 0 0 0 chr6 15925854 15925876 -133591161 + AT_rich Low_complexity Low_complexity 1 22 0 5 706 1221 289 24 27 chr6 15926611 15926945 -133590092 - MTE2b LTR MaLR 0 379 47 6 706 337 371 37 23 chr6 15927713 15927928 -133589109 - MIR SINE MIR -43 219 2 6 706 22 0 0 0 chr6 15928597 15928619 -133588418 + AT_rich Low_complexity Low_complexity 1 22 0 6 706 1152 226 95 70 chr6 15929894 15930251 -133586786 + ORR1D2 LTR MaLR 1 366 -4 6 706 22 80 0 0 chr6 15930272 15930322 -133586715 + AT_rich Low_complexity Low_complexity 1 50 0 6 706 609 14 0 0 chr6 15930567 15930637 -133586400 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 6 706 195 42 0 0 chr6 15930858 15930882 -133586155 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 706 1136 43 0 7 chr6 15930882 15931021 -133586016 - B1_Mm SINE Alu -9 138 1 6 706 28 48 0 0 chr6 15931324 15931366 -133585671 + AT_rich Low_complexity Low_complexity 1 42 0 6 706 234 0 0 0 chr6 15931379 15931405 -133585632 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 706 331 396 7 34 chr6 15931462 15931611 -133585426 - B4A SINE B4 -20 272 128 6 706 216 300 66 11 chr6 15932045 15932136 -133584901 + MIRb SINE MIR 116 211 -57 6 706 436 286 76 0 chr6 15932292 15932411 -133584626 + ID_B1 SINE B4 94 221 -3 6 706 266 234 15 46 chr6 15932411 15932541 -133584496 + A-rich Low_complexity Low_complexity 1 126 0 6 706 399 373 36 24 chr6 15932541 15932706 -133584331 + B3A SINE B2 2 168 -30 6 706 360 64 0 0 chr6 15932711 15932758 -133584279 + (CATA)n Simple_repeat Simple_repeat 2 48 0 6 706 774 286 10 0 chr6 15932878 15933077 -133583960 - B3 SINE B2 -15 201 1 6 706 1596 47 0 0 chr6 15933449 15933641 -133583396 - B2_Mm1a SINE B2 0 193 2 6 706 264 91 0 0 chr6 15935436 15935480 -133581557 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 6 706 43 0 0 0 chr6 15937100 15937143 -133579894 + AT_rich Low_complexity Low_complexity 1 43 0 6 706 450 0 0 0 chr6 15938981 15939031 -133578006 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 706 284 358 103 6 chr6 15939224 15939398 -133577639 + MIR SINE MIR 34 224 -38 6 706 2166 274 126 25 chr6 15940036 15941211 -133575826 + Lx8 LINE L1 4660 5986 -1487 6 706 804 141 0 0 chr6 15941393 15941528 -133575509 + (TA)n Simple_repeat Simple_repeat 1 135 0 6 706 266 148 19 0 chr6 15941528 15941582 -133575455 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 706 703 276 12 14 chr6 15941582 15941793 -133575244 - B3A SINE B2 -13 203 4 6 706 2255 314 116 27 chr6 15941893 15942967 -133574070 + Lx8 LINE L1 6301 7469 -4 6 706 542 327 52 78 chr6 15942987 15943256 -133573781 + B4 SINE B4 3 264 -28 6 706 4141 107 5 20 chr6 15943361 15943971 -133573066 + MT2B LTR ERVL 1 601 0 6 706 663 13 0 0 chr6 15944000 15944076 -133572961 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 706 345 24 0 0 chr6 15944079 15944121 -133572916 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 706 715 292 118 22 chr6 15944467 15944726 -133572311 - L1MC2 LINE L1 -493 5851 5572 6 706 898 86 0 0 chr6 15944726 15944854 -133572183 - Lx LINE L1 -6 6648 6521 6 706 988 282 83 58 chr6 15944854 15945811 -133571226 - L1MC2 LINE L1 -773 5571 4591 6 706 301 335 25 38 chr6 15946140 15946509 -133570528 - L1MC2 LINE L1 -1909 4237 3875 6 706 25 0 0 0 chr6 15946650 15946675 -133570362 + AT_rich Low_complexity Low_complexity 1 25 0 6 706 2247 164 70 11 chr6 15946675 15947119 -133569918 - Lx3C LINE L1 -3 6973 6504 6 706 1489 138 46 27 chr6 15947119 15947380 -133569657 - Lx3C LINE L1 -567 6409 6144 6 706 35219 36 1 0 chr6 15947471 15953317 -133563720 + L1Md_T LINE L1 1 5589 -297 6 706 8922 6 0 4 chr6 15953317 15954387 -133562650 + L1Md_T LINE L1 5590 6585 0 6 706 297 0 0 0 chr6 15955570 15955603 -133561434 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 706 943 264 78 22 chr6 15955729 15956000 -133561037 - MTD LTR MaLR -20 399 114 6 706 382 374 0 31 chr6 15956229 15956389 -133560648 - RSINE1 SINE B4 -8 157 3 6 706 23 78 0 0 chr6 15956934 15956985 -133560052 + AT_rich Low_complexity Low_complexity 1 51 0 6 706 3286 50 0 0 chr6 15956986 15957382 -133559655 + MTA_Mm LTR MaLR 1 396 0 6 706 7747 78 26 9 chr6 15957382 15958462 -133558575 + MTA_Mm-int LTR MaLR 1 1098 0 6 706 3252 28 7 34 chr6 15958462 15958869 -133558168 + MTA_Mm LTR MaLR 1 396 0 6 706 238 376 128 0 chr6 15958939 15959072 -133557965 - MIR3 SINE MIR -18 190 41 6 706 301 326 76 33 chr6 15959464 15959648 -133557389 - L1MD LINE L1 -513 5729 5538 6 706 2183 139 19 8 chr6 15959980 15960350 -133556687 - Lx2 LINE L1 0 6997 6624 6 706 228 242 30 0 chr6 15960533 15960599 -133556438 - L1MC1 LINE L1 -377 5956 5889 6 706 334 286 100 30 chr6 15961011 15961310 -133555727 - L1M5 LINE L1 -2999 3147 2828 6 706 26 0 0 0 chr6 15962071 15962097 -133554940 + AT_rich Low_complexity Low_complexity 1 26 0 6 706 5183 183 76 15 chr6 15962097 15963692 -133553345 - Lx2B LINE L1 -115 6885 5239 6 706 4430 167 39 6 chr6 15963691 15964035 -133553002 + L1_Mur2 LINE L1 4381 4724 -1153 6 706 1431 48 0 0 chr6 15964035 15964246 -133552791 + (CA)n Simple_repeat Simple_repeat 1 211 0 6 706 4430 167 39 6 chr6 15964246 15964747 -133552290 + L1_Mur2 LINE L1 4725 5254 -623 6 706 358 277 37 63 chr6 15964760 15964941 -133552096 - L1MC4 LINE L1 -1137 6905 6742 6 706 213 39 0 0 chr6 15965358 15965384 -133551653 + (T)n Simple_repeat Simple_repeat 1 26 0 6 706 24 32 0 0 chr6 15965994 15966025 -133551012 + AT_rich Low_complexity Low_complexity 1 31 0 6 706 288 0 0 0 chr6 15966048 15966080 -133550957 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 706 189 74 0 0 chr6 15966387 15966414 -133550623 + (TCTCTG)n Simple_repeat Simple_repeat 3 29 0 6 706 1212 50 0 0 chr6 15966426 15966586 -133550451 + (CA)n Simple_repeat Simple_repeat 2 161 0 6 706 1002 185 103 0 chr6 15968363 15968558 -133548479 - Lx4A LINE L1 0 7058 6844 6 706 1906 139 0 3 chr6 15968556 15968844 -133548193 + Lx4A LINE L1 6270 6556 -502 6 706 22 35 0 0 chr6 15968851 15968880 -133548157 + AT_rich Low_complexity Low_complexity 1 29 0 6 706 402 256 36 21 chr6 15969187 15969327 -133547710 - L1M2 LINE L1 -521 5791 5650 6 706 2540 209 10 4 chr6 15969337 15969826 -133547211 + RLTR16 LTR ERVK 1 492 -13 6 706 323 192 40 14 chr6 15969825 15969899 -133547138 + RLTR16 LTR ERVK 430 505 0 6 706 270 289 33 22 chr6 15970169 15970261 -133546776 + MTE2b LTR MaLR 275 367 -12 6 706 1781 295 50 37 chr6 15970277 15971222 -133545815 - L1M2 LINE L1 -680 5611 4625 6 706 21 36 0 0 chr6 15972145 15972173 -133544864 + AT_rich Low_complexity Low_complexity 1 28 0 6 706 355 338 86 0 chr6 15972394 15972533 -133544504 - RSINE1 SINE B4 -12 153 3 6 706 3819 39 6 8 chr6 15973239 15973710 -133543327 + L1Md_F3 LINE L1 6100 6569 -15 6 706 338 185 12 0 chr6 15973822 15973903 -133543134 + (TG)n Simple_repeat Simple_repeat 1 82 0 6 706 562 233 42 17 chr6 15973903 15974021 -133543016 - RSINE1 SINE B4 0 165 45 6 706 24 0 0 0 chr6 15974049 15974073 -133542964 + AT_rich Low_complexity Low_complexity 1 24 0 6 706 261 267 36 64 chr6 15974073 15974213 -133542824 - Lx8 LINE L1 -2 7471 7336 6 706 305 174 14 0 chr6 15974213 15974282 -133542755 + CT-rich Low_complexity Low_complexity 5 74 0 6 706 903 157 43 5 chr6 15974550 15974736 -133542301 + Lx3A LINE L1 6789 6981 0 6 706 345 339 66 49 chr6 15974754 15974937 -133542100 + B3A SINE B2 27 212 -4 6 706 365 262 136 0 chr6 15975076 15975179 -133541858 - PB1D10 SINE Alu 0 117 1 6 706 242 214 198 73 chr6 15975179 15975205 -133541832 - MT2B LTR ERVL -433 168 131 6 706 23 0 0 0 chr6 15975360 15975383 -133541654 + AT_rich Low_complexity Low_complexity 1 23 0 6 706 14175 56 2 0 chr6 15977259 15979227 -133537810 - L1Md_F2 LINE L1 -541 6041 4070 6 706 3992 70 0 0 chr6 15979227 15979744 -133537293 + L1Md_F2 LINE L1 6064 6580 -2 6 706 5394 85 99 0 chr6 15979759 15980538 -133536499 + L1_Mus3 LINE L1 5783 6638 0 6 706 291 241 118 48 chr6 15980681 15980868 -133536169 - L1MEc LINE L1 -4904 1714 1515 6 706 333 309 103 46 chr6 15980895 15981389 -133535648 - L1MEc LINE L1 -5116 1517 562 6 706 493 226 79 73 chr6 15981429 15981606 -133535431 - ORR1D1 LTR MaLR -196 178 1 6 706 1598 108 12 4 chr6 15981833 15982085 -133534952 - L1_Mus3 LINE L1 -7 6631 6378 6 706 23 78 0 0 chr6 15982243 15982294 -133534743 + AT_rich Low_complexity Low_complexity 1 51 0 6 706 384 22 0 0 chr6 15982534 15982579 -133534458 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 706 324 182 34 0 chr6 15982581 15982669 -133534368 + (TCTA)n Simple_repeat Simple_repeat 1 91 0 6 706 833 226 116 7 chr6 15982777 15983071 -133533966 - Lx9 LINE L1 -2 7642 7317 6 706 441 204 23 0 chr6 15983067 15983155 -133533882 + Lx9 LINE L1 6993 7082 -562 6 706 9719 165 23 4 chr6 15983325 15983600 -133533437 - L1_Mur2 LINE L1 -876 5001 4728 6 706 207 0 0 0 chr6 15983600 15983623 -133533414 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 706 9719 165 23 4 chr6 15983623 15984843 -133532194 - L1_Mur2 LINE L1 -1150 4727 3484 6 706 516 16 0 0 chr6 15984843 15984904 -133532133 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 6 706 9719 165 23 4 chr6 15984904 15985205 -133531832 - L1_Mur2 LINE L1 -2394 3483 3171 6 706 4782 171 0 41 chr6 15985232 15985503 -133531534 + Lx LINE L1 5022 5287 -596 6 706 2671 124 23 7 chr6 15985503 15985932 -133531105 + L1_Mus3 LINE L1 6195 6630 -8 6 706 4782 171 0 41 chr6 15985932 15985960 -133531077 + Lx LINE L1 5288 5291 -592 6 706 281 50 67 0 chr6 15985960 15986020 -133531017 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 706 6537 132 40 15 chr6 15986020 15987343 -133529694 + Lx LINE L1 5292 6654 0 6 706 284 139 0 0 chr6 15987491 15987534 -133529503 - ORR1A4 LTR MaLR -286 43 1 6 706 734 350 64 39 chr6 15987682 15988042 -133528995 + MTE2a LTR MaLR 4 372 -7 6 706 2721 146 2 7 chr6 15988774 15989221 -133527816 - Lx2B LINE L1 -354 6646 6202 6 706 2121 191 22 5 chr6 15989221 15989631 -133527406 + Lx2A1 LINE L1 6591 7007 -1 6 706 23 33 0 0 chr6 15990649 15990679 -133526358 + AT_rich Low_complexity Low_complexity 1 30 0 6 707 210 325 12 12 chr6 15991456 15991540 -133525497 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 6 707 1623 273 91 21 chr6 15991540 15992101 -133524936 - Lx7 LINE L1 -1507 6189 5590 6 707 481 263 38 39 chr6 15992101 15992291 -133524746 + MTE2a LTR MaLR 24 212 -207 6 707 180 0 0 0 chr6 15992294 15992314 -133524723 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 6 707 763 260 83 0 chr6 15993738 15993930 -133523107 + B3 SINE B2 1 208 -8 7 707 899 316 41 26 chr6 15994058 15994399 -133522638 + MTEb LTR MaLR 34 379 0 7 707 1820 317 147 97 chr6 15994399 15994685 -133522352 + MTEb-int LTR MaLR 1 306 -1274 7 707 495 0 0 0 chr6 15994685 15994740 -133522297 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 707 1820 317 147 97 chr6 15994740 15995077 -133521960 + MTEb-int LTR MaLR 307 664 -916 7 707 549 309 5 16 chr6 15995077 15995271 -133521766 + B3A SINE B2 1 192 -6 7 707 1820 317 147 97 chr6 15995271 15996085 -133520952 + MTEb-int LTR MaLR 665 1510 -70 7 707 1069 294 89 21 chr6 15996631 15996968 -133520069 + MTE2b LTR MaLR 5 364 -15 7 707 807 240 19 29 chr6 15997477 15997683 -133519354 + B3 SINE B2 11 214 -2 7 707 187 195 24 24 chr6 15997798 15997840 -133519197 - MIRm SINE MIR -125 151 110 7 707 228 182 0 0 chr6 15997880 15997924 -133519113 + (TCG)n Simple_repeat Simple_repeat 3 46 0 7 707 22 35 0 0 chr6 15997997 15998026 -133519011 + AT_rich Low_complexity Low_complexity 1 29 0 7 707 357 24 0 0 chr6 15998093 15998135 -133518902 + (TC)n Simple_repeat Simple_repeat 2 43 0 7 707 307 143 0 0 chr6 15998168 15998217 -133518820 - Lx9 LINE L1 -228 7416 7368 7 707 310 323 0 0 chr6 15998232 15998362 -133518675 - Lx9 LINE L1 -9 7635 7506 7 707 201 39 0 0 chr6 15998793 15998819 -133518218 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 7 707 360 267 11 43 chr6 15999906 16000000 -133517037 - MTEa LTR MaLR -29 350 260 7 707 266 251 25 125 chr6 16000338 16000538 -133516499 + YREP_Mm Unknown Unknown 119 298 -1514 1 707 609 275 0 27 chr6 16000409 16000555 -133516482 - B1F1 SINE Alu -6 143 2 2 707 243 242 53 32 chr6 16000732 16000826 -133516211 - L1M5 LINE L1 -722 5518 5423 3 707 789 172 0 63 chr6 16000928 16001071 -133515966 - B1_Mur4 SINE Alu -7 143 10 4 707 227 164 16 0 chr6 16001261 16001322 -133515715 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 707 23 0 0 0 chr6 16001341 16001364 -133515673 + AT_rich Low_complexity Low_complexity 1 23 0 6 707 306 270 78 21 chr6 16001404 16001597 -133515440 + L1M2 LINE L1 5023 5226 -917 7 707 1167 61 0 0 chr6 16001618 16001765 -133515272 + B1_Mus1 SINE Alu 2 148 0 8 707 314 95 0 31 chr6 16001769 16001834 -133515203 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 9 707 530 286 58 28 chr6 16001957 16002248 -133514789 + L1_Mur3 LINE L1 5344 5643 -237 1 707 540 30 0 0 chr6 16002255 16002321 -133514716 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 707 180 0 0 0 chr6 16002497 16002517 -133514520 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 707 1120 75 0 0 chr6 16003346 16003493 -133513544 + B1_Mus1 SINE Alu 2 148 0 1 707 369 0 0 0 chr6 16003493 16003534 -133513503 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 707 310 352 30 0 chr6 16004018 16004152 -133512885 + Lx9 LINE L1 7300 7433 -211 1 707 1176 59 0 0 chr6 16004152 16004305 -133512732 + (CA)n Simple_repeat Simple_repeat 2 154 0 1 707 310 352 30 0 chr6 16004305 16004369 -133512668 + Lx9 LINE L1 7434 7503 -141 1 707 24 67 0 0 chr6 16004461 16004506 -133512531 + AT_rich Low_complexity Low_complexity 1 45 0 1 707 21 0 0 0 chr6 16005264 16005285 -133511752 + AT_rich Low_complexity Low_complexity 1 21 0 1 707 261 0 0 0 chr6 16006077 16006106 -133510931 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 707 770 311 38 23 chr6 16006693 16006959 -133510078 + B4A SINE B4 1 270 -22 2 707 420 213 8 16 chr6 16007022 16007146 -133509891 + (CA)n Simple_repeat Simple_repeat 2 124 0 2 707 346 191 32 11 chr6 16007148 16007243 -133509794 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 707 233 140 52 31 chr6 16007269 16007365 -133509672 + (CATA)n Simple_repeat Simple_repeat 1 98 0 2 707 314 179 42 0 chr6 16007407 16007502 -133509535 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 2 707 373 331 15 0 chr6 16008584 16008714 -133508323 - RSINE1 SINE B4 -6 159 28 2 707 614 230 52 0 chr6 16008780 16008915 -133508122 - B1_Mus1 SINE Alu 0 148 7 2 707 1335 180 155 16 chr6 16009749 16010071 -133506966 - ORR1B2 LTR MaLR 0 367 1 2 707 228 387 149 11 chr6 16010387 16010562 -133506475 - MIRb SINE MIR -69 199 1 2 707 678 206 14 14 chr6 16011930 16012068 -133504969 - MTD LTR MaLR -2 417 280 2 707 432 0 0 0 chr6 16012394 16012442 -133504595 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 707 657 271 23 83 chr6 16012442 16012627 -133504410 - B3 SINE B2 -12 204 31 3 707 5313 65 19 7 chr6 16012627 16013328 -133503709 - L1_Mus1 LINE L1 0 6567 5859 3 707 657 271 23 83 chr6 16013328 16013359 -133503678 - B3 SINE B2 -186 30 1 3 707 1182 34 14 7 chr6 16013798 16013944 -133503093 + B1_Mm SINE Alu 1 147 0 3 707 24 0 0 0 chr6 16013945 16013969 -133503068 + AT_rich Low_complexity Low_complexity 1 24 0 3 707 189 171 0 0 chr6 16015081 16015116 -133501921 + A-rich Low_complexity Low_complexity 1 35 0 3 707 437 97 0 14 chr6 16016637 16016710 -133500327 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 707 737 185 22 15 chr6 16016716 16016853 -133500184 + B1_Mur3 SINE Alu 5 142 -7 3 707 186 43 0 0 chr6 16016855 16016878 -133500159 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 3 707 274 298 55 55 chr6 16017109 16017237 -133499800 - ORR1E LTR MaLR -128 231 104 3 707 245 316 61 73 chr6 16017590 16017754 -133499283 - L3 LINE CR1 -1115 3374 3213 4 707 202 106 21 21 chr6 16018512 16018560 -133498477 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 707 567 103 0 0 chr6 16018907 16019004 -133498033 + (GA)n Simple_repeat Simple_repeat 2 98 0 4 707 635 293 102 20 chr6 16019512 16019766 -133497271 + MLT1B LTR MaLR 108 382 -8 4 707 360 0 0 0 chr6 16019994 16020034 -133497003 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 707 6512 194 41 25 chr6 16020296 16022797 -133494240 - Lx5 LINE L1 -3 7047 4503 4 707 3023 164 34 51 chr6 16022793 16023261 -133493776 + L1_Mur2 LINE L1 3869 4337 -1540 4 707 878 152 139 6 chr6 16023261 16023433 -133493604 + B2_Mm2 SINE B2 1 195 0 4 707 3023 164 34 51 chr6 16023433 16023612 -133493425 + L1_Mur2 LINE L1 4338 4505 -1372 4 707 338 238 0 110 chr6 16023615 16023733 -133493304 - Lx8 LINE L1 -11 7462 7358 4 707 1341 279 69 10 chr6 16023793 16024184 -133492853 + Lx7 LINE L1 6550 6963 -733 4 707 256 283 23 98 chr6 16025264 16025349 -133491688 - MER58B DNA MER1_type -128 213 131 5 707 821 290 29 87 chr6 16025349 16025730 -133491307 - ORR1E LTR MaLR 0 359 1 5 707 256 283 23 98 chr6 16025730 16025777 -133491260 - MER58B DNA MER1_type -211 130 91 5 707 305 260 19 65 chr6 16025794 16025901 -133491136 - L2a LINE L2 -5 3421 3320 5 707 381 291 45 0 chr6 16026726 16026836 -133490201 - ID_B1 SINE B4 0 224 110 5 707 544 370 10 0 chr6 16026890 16027090 -133489947 + ID_B1 SINE B4 22 223 -1 5 707 471 146 22 39 chr6 16028787 16028965 -133488072 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 5 707 645 257 7 0 chr6 16029334 16029474 -133487563 - B1_Mur1 SINE Alu -8 141 1 5 707 272 164 85 37 chr6 16029939 16030021 -133487016 + Lx9 LINE L1 7551 7636 -8 5 707 4628 57 3 0 chr6 16031356 16031938 -133485099 - L1Md_F2 LINE L1 -1 6581 5998 5 707 371 267 84 78 chr6 16032088 16032230 -133484807 - ID_B1 SINE B4 0 224 82 5 707 205 163 41 0 chr6 16032480 16032529 -133484508 + A-rich Low_complexity Low_complexity 5 55 0 6 707 569 183 9 203 chr6 16032583 16032795 -133484242 - B2_Mm2 SINE B2 -9 186 16 6 707 213 235 0 121 chr6 16032800 16032858 -133484179 + B1_Mus1 SINE Alu 6 56 -92 6 707 273 29 0 0 chr6 16032875 16032909 -133484128 + (A)n Simple_repeat Simple_repeat 1 34 0 6 707 431 287 19 0 chr6 16032979 16033087 -133483950 + RSINE1 SINE B4 25 134 -31 6 707 596 14 14 0 chr6 16033093 16033166 -133483871 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 6 707 252 200 0 32 chr6 16033180 16033242 -133483795 + GA-rich Low_complexity Low_complexity 5 64 0 6 707 472 284 35 21 chr6 16034230 16034374 -133482663 - MER5A1 DNA MER1_type -3 163 18 6 707 573 296 72 109 chr6 16034710 16034903 -133482134 - B3A SINE B2 -9 186 1 6 707 820 293 71 56 chr6 16034976 16035315 -133481722 + L1MA4 LINE L1 5421 5820 -480 6 707 341 34 0 48 chr6 16035315 16035377 -133481660 + L1_Mus3 LINE L1 6580 6638 0 7 707 820 297 75 57 chr6 16035377 16035492 -133481545 + L1MA4 LINE L1 5749 5934 -366 6 707 21 0 0 0 chr6 16035875 16035896 -133481141 + AT_rich Low_complexity Low_complexity 1 21 0 7 707 404 364 61 22 chr6 16039165 16039443 -133477594 - L1MEe LINE L1 -4455 399 111 7 707 365 0 0 22 chr6 16039488 16039534 -133477503 + (TTA)n Simple_repeat Simple_repeat 1 45 0 7 707 21 57 0 0 chr6 16040990 16041025 -133476012 + AT_rich Low_complexity Low_complexity 1 35 0 7 707 260 197 45 15 chr6 16041618 16041685 -133475352 - MLT1A LTR MaLR -19 355 287 7 707 2561 63 36 0 chr6 16042339 16042673 -133474364 - ORR1A1 LTR MaLR 0 346 1 7 707 1112 270 51 3 chr6 16042722 16043034 -133474003 - Lx7 LINE L1 -1278 6418 6092 7 707 1311 271 61 0 chr6 16043033 16043395 -133473642 + Lx7 LINE L1 6390 6773 -923 7 707 774 54 0 26 chr6 16043399 16043513 -133473524 - L1_Mus2 LINE L1 -2 6564 6454 7 707 634 307 24 17 chr6 16043930 16044177 -133472860 - MTE2b LTR MaLR -133 246 1 7 707 181 354 0 0 chr6 16044444 16044509 -133472528 - MER5A DNA MER1_type -85 104 40 8 707 8204 42 1 7 chr6 16044659 16046256 -133470781 - L1Md_F2 LINE L1 0 6582 4996 8 707 198 103 0 0 chr6 16046767 16046796 -133470241 + (CAA)n Simple_repeat Simple_repeat 3 31 0 8 707 1255 306 24 9 chr6 16046869 16047288 -133469749 - Lx6 LINE L1 -3 7457 7033 8 707 649 205 257 0 chr6 16047289 16047460 -133469577 - ORR1B2 LTR MaLR -144 223 9 8 707 1703 129 35 7 chr6 16047494 16047911 -133469126 - RLTR45 LTR ERVK -6 476 1 8 707 1614 236 28 15 chr6 16047911 16048307 -133468730 - L1_Mur3 LINE L1 -7034 678 278 8 707 698 172 12 62 chr6 16049365 16049526 -133467511 + RMER1C Other Other 1187 1339 -3 8 707 487 311 105 0 chr6 16049618 16049808 -133467229 - ID_B1 SINE B4 -13 211 2 8 707 649 160 124 0 chr6 16051231 16051400 -133465637 - Lx9 LINE L1 0 7644 7455 8 707 3611 43 0 0 chr6 16052501 16052941 -133464096 - L1Md_F2 LINE L1 -2 6580 6141 9 707 21 36 0 0 chr6 16053039 16053067 -133463970 + AT_rich Low_complexity Low_complexity 1 28 0 9 707 448 309 19 32 chr6 16053106 16053260 -133463777 - B3A SINE B2 -46 152 1 9 707 222 308 202 17 chr6 16053260 16053379 -133463658 - MIRc SINE MIR -113 155 15 9 707 2362 90 32 0 chr6 16053484 16053827 -133463210 + L1_Mus4 LINE L1 6276 6629 -7 9 707 436 376 24 0 chr6 16053886 16054056 -133462981 + B3A SINE B2 5 178 -20 9 707 2970 44 0 0 chr6 16054132 16054522 -133462515 + L1Md_A LINE L1 6215 6582 0 9 707 27 29 0 0 chr6 16055329 16055363 -133461674 + AT_rich Low_complexity Low_complexity 1 34 0 9 707 5214 68 1 10 chr6 16055532 16056217 -133460820 + L1Md_F2 LINE L1 5892 6570 -12 9 707 898 61 121 8 chr6 16057377 16057509 -133459528 + B1_Mm SINE Alu 1 147 0 9 707 203 0 37 0 chr6 16057511 16057538 -133459499 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1 707 192 118 0 0 chr6 16057634 16057650 -133459387 + (A)n Simple_repeat Simple_repeat 1 16 0 1 707 1090 82 0 0 chr6 16057650 16057797 -133459240 + B1_Mus2 SINE Alu 1 147 0 1 707 192 118 0 0 chr6 16057797 16057814 -133459223 + (A)n Simple_repeat Simple_repeat 1 17 0 1 707 418 128 0 56 chr6 16058046 16058154 -133458883 + GA-rich Low_complexity Low_complexity 5 106 0 1 707 2329 146 183 22 chr6 16058390 16058882 -133458155 - Lx4B LINE L1 -4 7054 6484 1 707 2073 99 3 3 chr6 16060601 16060906 -133456131 - L1_Mus4 LINE L1 -9 6627 6323 1 707 2849 175 65 29 chr6 16061472 16061827 -133455210 - RMER6C LTR ERVK 0 690 334 1 707 294 29 0 0 chr6 16061827 16061862 -133455175 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 707 2849 175 65 29 chr6 16061862 16062172 -133454865 - RMER6C LTR ERVK -357 333 2 1 707 957 79 0 0 chr6 16062216 16062356 -133454681 + (TG)n Simple_repeat Simple_repeat 2 141 0 1 707 280 310 42 61 chr6 16062358 16062491 -133454546 - RLTR25A LTR ERVK -5 1098 968 1 707 675 0 0 0 chr6 16062491 16062566 -133454471 + (TTC)n Simple_repeat Simple_repeat 3 77 0 1 707 280 310 42 61 chr6 16062566 16062597 -133454440 - RLTR25A LTR ERVK -136 967 937 1 707 226 72 70 28 chr6 16062674 16062745 -133454292 + T-rich Low_complexity Low_complexity 1 74 0 1 707 309 89 0 0 chr6 16063801 16063846 -133453191 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 707 27 0 0 0 chr6 16064012 16064039 -133452998 + AT_rich Low_complexity Low_complexity 1 27 0 1 707 632 289 25 31 chr6 16064459 16064655 -133452382 + B3A SINE B2 1 195 -3 1 707 183 264 42 52 chr6 16064762 16064858 -133452179 - L3 LINE CR1 -2291 2198 2104 1 707 332 234 0 45 chr6 16064925 16064992 -133452045 + URR1A DNA MER1_type 35 98 -128 1 707 256 169 51 0 chr6 16065048 16065107 -133451930 + URR1A DNA MER1_type 72 133 -93 1 707 724 140 30 112 chr6 16065105 16065274 -133451763 + URR1A DNA MER1_type 72 226 0 1 707 296 250 52 13 chr6 16065776 16065853 -133451184 - B3A SINE B2 -38 160 81 1 707 2650 168 65 116 chr6 16065869 16066596 -133450441 + RMER6C LTR ERVK 1 690 0 1 707 198 0 0 0 chr6 16066917 16066939 -133450098 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 707 485 287 99 21 chr6 16067440 16067632 -133449405 + L1VL1 LINE L1 85 291 -6131 1 707 338 278 16 16 chr6 16067780 16067908 -133449129 + L1Md_F LINE L1 568 695 -5824 1 707 1729 186 129 5 chr6 16067908 16068281 -133448756 + L1Md_F LINE L1 611 1029 -5490 1 707 28355 103 25 38 chr6 16068271 16072735 -133444302 + L1Md_F3 LINE L1 379 4831 -1052 1 707 1364 88 0 20 chr6 16072735 16072931 -133444106 + L1_Mus1 LINE L1 6376 6567 0 1 707 28355 112 22 45 chr6 16072931 16073787 -133443250 + L1Md_F3 LINE L1 4832 5557 -326 1 707 2096 115 13 0 chr6 16073787 16074092 -133442945 - RLTR27 LTR ERVK 0 309 1 1 707 28355 60 4 2 chr6 16074092 16074462 -133442575 + L1Md_F3 LINE L1 5558 5963 -603 1 707 3577 35 5 14 chr6 16074462 16074801 -133442236 + L1Md_F3 LINE L1 6150 6488 -96 1 707 2992 29 0 0 chr6 16074801 16075147 -133441890 + ORR1A0 LTR MaLR 1 346 0 1 707 3577 35 5 14 chr6 16075147 16075246 -133441791 + L1Md_F3 LINE L1 6489 6584 0 1 707 4266 121 26 6 chr6 16075226 16075890 -133441147 + L1_Mus3 LINE L1 5940 6616 -22 1 707 960 254 90 0 chr6 16075891 16076159 -133440878 + Lx9 LINE L1 7174 7465 -179 1 707 398 270 118 73 chr6 16077036 16077256 -133439781 - CYRA11_Mm Unknown Y-chromosome -216 401 172 1 707 910 134 50 60 chr6 16077075 16077257 -133439780 + URR1A DNA MER1_type 47 226 0 1 707 22 56 0 0 chr6 16077405 16077441 -133439596 + AT_rich Low_complexity Low_complexity 1 36 0 1 707 1877 159 35 3 chr6 16077738 16078054 -133438983 - ORR1A3 LTR MaLR 0 326 1 1 707 485 218 8 0 chr6 16080816 16080940 -133436097 + GA-rich Low_complexity Low_complexity 3 127 0 1 707 182 59 0 81 chr6 16080960 16080997 -133436040 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 707 432 0 0 0 chr6 16082174 16082222 -133434815 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 707 21 0 0 0 chr6 16083243 16083264 -133433773 + AT_rich Low_complexity Low_complexity 1 21 0 1 707 433 250 130 6 chr6 16083597 16083766 -133433271 - L1MA6 LINE L1 -49 6251 6062 1 707 22 56 0 0 chr6 16085121 16085157 -133431880 + AT_rich Low_complexity Low_complexity 1 36 0 1 707 291 350 171 48 chr6 16085182 16085252 -133431785 - B4A SINE B4 -6 286 219 1 707 634 88 32 8 chr6 16085252 16085378 -133431659 + (TCTA)n Simple_repeat Simple_repeat 2 130 0 1 707 291 350 171 48 chr6 16085378 16085559 -133431478 - B4A SINE B4 -74 218 5 1 707 21 89 0 0 chr6 16085820 16085876 -133431161 + AT_rich Low_complexity Low_complexity 1 56 0 1 707 270 56 0 0 chr6 16086724 16086760 -133430277 + (T)n Simple_repeat Simple_repeat 1 36 0 1 707 305 321 7 85 chr6 16088046 16088199 -133428838 + B3A SINE B2 25 165 -33 1 707 369 0 0 0 chr6 16088199 16088240 -133428797 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 707 351 0 0 0 chr6 16088430 16088469 -133428568 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 707 733 271 52 35 chr6 16088760 16089050 -133427987 + L1_Rod LINE L1 5273 5567 -280 1 707 521 47 11 34 chr6 16089067 16089155 -133427882 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 707 23 54 0 0 chr6 16089361 16089398 -133427639 + AT_rich Low_complexity Low_complexity 1 37 0 1 707 196 53 53 0 chr6 16091849 16091887 -133425150 + (CAAAAA)n Simple_repeat Simple_repeat 5 44 0 1 707 539 112 47 16 chr6 16093972 16094099 -133422938 + (TCTCTG)n Simple_repeat Simple_repeat 2 132 0 1 707 293 0 0 26 chr6 16094177 16094215 -133422822 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 707 214 231 19 0 chr6 16095697 16095749 -133421288 + (TAA)n Simple_repeat Simple_repeat 1 53 0 1 707 274 239 30 0 chr6 16096273 16096340 -133420697 - ORR1E LTR MaLR -290 69 1 1 707 393 290 70 19 chr6 16096561 16096775 -133420262 + L1M2 LINE L1 5494 5718 -594 1 707 21 71 0 0 chr6 16097448 16097490 -133419547 + AT_rich Low_complexity Low_complexity 1 42 0 1 707 229 333 0 0 chr6 16098737 16098809 -133418228 - RMER12 LTR ERVK -520 802 731 1 707 245 246 29 14 chr6 16099401 16099471 -133417566 + MLT1D LTR MaLR 127 197 -308 1 707 1005 103 0 7 chr6 16100104 16100251 -133416786 - B1_Mus1 SINE Alu -2 146 1 1 707 262 291 45 52 chr6 16100428 16100562 -133416475 + HAL1 LINE L1 1238 1370 -1137 1 707 339 302 71 71 chr6 16101099 16101295 -133415742 + B3A SINE B2 1 196 -2 1 707 241 323 0 0 chr6 16102084 16102146 -133414891 + polypurine Low_complexity Low_complexity 6 67 0 1 707 342 184 22 54 chr6 16102151 16102335 -133414702 + (CAGAGA)n Simple_repeat Simple_repeat 1 178 0 1 707 252 353 27 86 chr6 16104041 16104227 -133412810 - MIR3 SINE MIR -28 180 6 1 707 27 73 0 0 chr6 16104465 16104520 -133412517 + AT_rich Low_complexity Low_complexity 1 55 0 1 707 222 91 0 0 chr6 16104573 16104606 -133412431 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 707 24 32 0 0 chr6 16104608 16104639 -133412398 + AT_rich Low_complexity Low_complexity 1 31 0 1 707 528 285 0 43 chr6 16105841 16106028 -133411009 - B3A SINE B2 -16 182 4 1 707 756 290 94 29 chr6 16106768 16107415 -133409622 - L1M4c LINE L1 -2555 4548 3860 1 707 233 294 29 0 chr6 16107445 16107513 -133409524 - ID4_ SINE ID -13 70 1 1 707 230 297 54 74 chr6 16107526 16107675 -133409362 - B1F2 SINE Alu -3 146 1 1 707 314 244 44 60 chr6 16107686 16107869 -133409168 - L1M4c LINE L1 -3220 3883 3704 1 707 1427 247 43 13 chr6 16107869 16107934 -133409103 + Lx5 LINE L1 6659 6723 -327 1 707 387 0 0 0 chr6 16107934 16107977 -133409060 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 707 1427 247 43 13 chr6 16107977 16108285 -133408752 + Lx5 LINE L1 6724 7042 -8 1 707 242 214 7 0 chr6 16108390 16108530 -133408507 + (TA)n Simple_repeat Simple_repeat 1 141 0 1 707 322 316 90 0 chr6 16108591 16108768 -133408269 - L1M4c LINE L1 -3528 3572 3380 1 707 658 242 110 0 chr6 16108811 16109072 -133407965 - L1M4c LINE L1 -3808 3295 3006 1 707 1146 63 0 0 chr6 16109327 16109470 -133407567 + B1_Mus1 SINE Alu 3 145 -3 1 707 510 17 0 0 chr6 16109470 16109529 -133407508 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 707 487 219 8 8 chr6 16109684 16109813 -133407224 - Lx9 LINE L1 -35 7609 7481 1 707 200 333 0 21 chr6 16109816 16109911 -133407126 + (CATATA)n Simple_repeat Simple_repeat 3 95 0 1 707 275 214 71 0 chr6 16109911 16109981 -133407056 - Lx9 LINE L1 -174 7470 7396 1 707 434 145 118 0 chr6 16109990 16110066 -133406971 + Lx9 LINE L1 7296 7380 -264 1 707 366 61 0 0 chr6 16110076 16110125 -133406912 + (ATTG)n Simple_repeat Simple_repeat 4 52 0 1 707 1272 284 43 11 chr6 16110728 16111199 -133405838 - Lx6 LINE L1 -574 6886 6455 1 707 2508 247 42 24 chr6 16111199 16111375 -133405662 - Lx6 LINE L1 -1187 6273 6090 1 707 570 67 0 0 chr6 16111375 16111450 -133405587 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1 707 2508 234 25 27 chr6 16111450 16112148 -133404889 - Lx6 LINE L1 -1371 6089 5381 1 707 3311 241 108 11 chr6 16112165 16112998 -133404039 - Lx5 LINE L1 -12 7038 6125 1 707 1163 202 47 23 chr6 16112994 16113293 -133403744 - Lx6 LINE L1 -472 5408 5103 1 707 342 285 93 36 chr6 16113302 16113609 -133403428 - L1M4c LINE L1 -4679 2429 2143 1 707 282 246 62 94 chr6 16113610 16113734 -133403303 - Lx9 LINE L1 -20 7624 7516 1 707 405 0 0 0 chr6 16113734 16113779 -133403258 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 707 282 246 62 94 chr6 16113779 16113810 -133403227 - Lx9 LINE L1 -129 7515 7484 1 707 180 0 0 0 chr6 16113810 16113830 -133403207 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 707 282 246 62 94 chr6 16113830 16113897 -133403140 - Lx9 LINE L1 -161 7483 7409 1 707 231 61 0 0 chr6 16114171 16114204 -133402833 + (ATG)n Simple_repeat Simple_repeat 2 34 0 1 707 324 274 150 18 chr6 16114348 16114575 -133402462 - L1M4c LINE L1 -4927 2103 1847 1 707 7217 157 82 10 chr6 16115408 16116839 -133400198 - ORR1A3-int LTR MaLR -45 1918 384 1 707 877 167 58 0 chr6 16116839 16116995 -133400042 - ORR1A3-int LTR MaLR -346 1617 1453 1 707 2347 130 2 33 chr6 16117092 16117513 -133399524 - MusHAL1 LINE L1 -1342 1370 963 1 707 3858 155 8 8 chr6 16117507 16118210 -133398827 + L1_Mur2 LINE L1 3782 4484 -1393 1 707 1144 62 7 0 chr6 16118211 16118357 -133398680 + B1_Mm SINE Alu 1 147 0 1 707 1643 158 6 1 chr6 16118365 16118640 -133398397 + L1_Mm LINE L1 5325 5583 -541 1 707 4972 115 15 5 chr6 16118640 16119384 -133397653 + L1_Mus4 LINE L1 5872 6622 -14 1 707 247 178 0 0 chr6 16119384 16119429 -133397608 + L1Md_F LINE L1 285 329 -6190 1 707 1149 201 11 21 chr6 16119425 16119687 -133397350 + L1Md_F LINE L1 166 511 -6108 1 707 1004 46 0 0 chr6 16119685 16119816 -133397221 + L1Md_F LINE L1 931 1061 -5666 1 707 4709 175 64 107 chr6 16119815 16121649 -133395388 - L1Md_F LINE L1 -3813 2070 217 1 707 183 42 0 0 chr6 16121725 16121749 -133395288 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 708 875 257 109 31 chr6 16121931 16122288 -133394749 + Lx8 LINE L1 7080 7464 -9 1 708 223 49 0 47 chr6 16122423 16122466 -133394571 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1 708 253 275 26 52 chr6 16122644 16122759 -133394278 - L1MEb LINE L1 -5480 590 479 1 708 342 0 0 0 chr6 16122887 16122925 -133394112 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 708 3587 64 8 4 chr6 16124003 16124487 -133392550 - L1_Mus2 LINE L1 -14 6552 6067 2 708 35 41 0 0 chr6 16124618 16124667 -133392370 + AT_rich Low_complexity Low_complexity 1 49 0 2 708 609 189 0 0 chr6 16124688 16124799 -133392238 - Lx9 LINE L1 -219 7425 7315 2 708 832 250 98 32 chr6 16124799 16125076 -133391961 + Lx9 LINE L1 7032 7326 -318 2 708 441 296 130 76 chr6 16126561 16126876 -133390161 - MLT2C1 LTR ERVL -63 334 3 2 708 414 0 0 0 chr6 16127022 16127068 -133389969 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 708 619 287 109 19 chr6 16127071 16127337 -133389700 - B4 SINE B4 -2 290 1 2 708 250 314 56 31 chr6 16127446 16127607 -133389430 + MIR3 SINE MIR 5 169 -39 2 708 212 154 0 0 chr6 16127865 16127904 -133389133 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 708 382 243 71 29 chr6 16129357 16129497 -133387540 - L1MA6 LINE L1 -24 6276 6131 2 708 24 32 0 0 chr6 16129641 16129672 -133387365 + AT_rich Low_complexity Low_complexity 1 31 0 2 708 667 217 36 7 chr6 16129925 16130064 -133386973 + B1_Mur1 SINE Alu 7 149 0 2 708 279 0 0 0 chr6 16130468 16130499 -133386538 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 708 211 338 28 0 chr6 16130517 16130588 -133386449 - B1_Mur4 SINE Alu -8 142 70 2 708 528 68 0 0 chr6 16130910 16130983 -133386054 + (GA)n Simple_repeat Simple_repeat 1 73 0 2 708 350 269 26 132 chr6 16134571 16134875 -133382162 + Lx9 LINE L1 7344 7615 -29 2 708 811 336 15 11 chr6 16136097 16136365 -133380672 + B4A SINE B4 2 270 -22 2 708 447 68 0 0 chr6 16136376 16136435 -133380602 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 708 592 216 48 0 chr6 16136809 16136934 -133380103 + B1_Mur2 SINE Alu 5 135 -14 2 708 528 59 0 0 chr6 16136936 16137004 -133380033 + (CAAAG)n Simple_repeat Simple_repeat 2 69 0 2 708 216 320 179 0 chr6 16137824 16137902 -133379135 - B1F1 SINE Alu -51 98 7 2 708 198 206 0 0 chr6 16140771 16140834 -133376203 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 708 856 257 80 44 chr6 16140859 16141197 -133375840 - Lx9 LINE L1 -174 7470 7121 2 708 1042 274 72 39 chr6 16141703 16142081 -133374956 - MTEa LTR MaLR 0 370 3 2 708 434 253 138 67 chr6 16142315 16142510 -133374527 + B3 SINE B2 2 210 -6 2 708 1077 284 68 57 chr6 16143560 16143930 -133373107 - ORR1D1 LTR MaLR 0 374 1 2 708 1461 226 100 26 chr6 16143948 16144338 -133372699 + MTD LTR MaLR 1 419 0 2 708 882 239 76 81 chr6 16145709 16146128 -133370909 - Lx9 LINE L1 0 7644 7228 2 708 539 277 13 7 chr6 16146148 16146297 -133370740 + Lx9 LINE L1 7048 7197 -447 2 708 2389 245 26 66 chr6 16146854 16147554 -133369483 - RMER1C Other Other 0 1342 671 2 708 28 29 0 0 chr6 16147867 16147902 -133369135 + AT_rich Low_complexity Low_complexity 1 35 0 2 708 332 293 148 12 chr6 16147902 16148071 -133368966 - Lx8 LINE L1 -8 7465 7274 2 708 744 279 25 10 chr6 16150366 16150569 -133366468 + B3 SINE B2 1 206 -10 2 708 432 0 0 0 chr6 16150648 16150696 -133366341 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 2 708 343 225 62 0 chr6 16150706 16150786 -133366251 + MLT1B LTR MaLR 140 224 -166 2 708 32817 77 6 13 chr6 16150798 16155982 -133361055 + L1Md_F2 LINE L1 441 5586 -297 2 708 7837 51 5 3 chr6 16155983 16156973 -133360064 + L1Md_F2 LINE L1 5588 6579 -3 2 708 186 43 0 0 chr6 16157003 16157026 -133360011 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 2 708 22696 65 1 34 chr6 16157026 16160293 -133356744 + L1Md_A LINE L1 2806 5951 -631 2 708 7898 47 1 4 chr6 16160293 16161278 -133355759 + L1Md_F3 LINE L1 5588 6569 -15 2 708 867 233 11 5 chr6 16161316 16161506 -133355531 + Lx6 LINE L1 7250 7440 -20 2 708 218 213 0 0 chr6 16161544 16161591 -133355446 + A-rich Low_complexity Low_complexity 1 47 0 2 708 180 0 0 0 chr6 16162124 16162144 -133354893 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 708 531 237 102 0 chr6 16162674 16162860 -133354177 + L1MA8 LINE L1 6044 6248 -43 2 708 445 324 42 35 chr6 16164909 16165053 -133351984 - RSINE1 SINE B4 -4 161 17 2 708 28 71 0 0 chr6 16166599 16166655 -133350382 + AT_rich Low_complexity Low_complexity 1 56 0 2 708 442 340 0 0 chr6 16166821 16166962 -133350075 + RSINE1 SINE B4 11 151 -14 2 708 228 135 0 0 chr6 16166987 16167024 -133350013 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 708 212 86 29 0 chr6 16167152 16167187 -133349850 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 2 708 2491 125 48 22 chr6 16167553 16167969 -133349068 - RLTR23 LTR ERV1 -3 427 1 2 708 251 236 225 80 chr6 16168079 16168217 -133348820 + RSINE1 SINE B4 2 159 -6 2 708 201 167 74 0 chr6 16168462 16168516 -133348521 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 2 708 39 0 0 0 chr6 16168965 16169004 -133348033 + AT_rich Low_complexity Low_complexity 1 39 0 2 708 446 328 95 10 chr6 16169005 16169203 -133347834 - B3A SINE B2 0 216 3 2 708 533 225 36 2 chr6 16169838 16169990 -133347047 - ORR1C2 LTR MaLR 0 384 219 2 708 217 255 59 0 chr6 16169945 16169996 -133347041 + B1_Mur1 SINE Alu 58 111 -38 2 708 1004 313 79 84 chr6 16170028 16170164 -133346873 - L1MCa LINE L1 -4827 1681 1549 2 708 186 43 0 0 chr6 16170164 16170187 -133346850 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2 708 1004 313 79 84 chr6 16170187 16170933 -133346104 - L1MCa LINE L1 -4960 1548 827 2 708 288 53 0 0 chr6 16170933 16170971 -133346066 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 708 1004 313 79 84 chr6 16170971 16171255 -133345782 - L1MCa LINE L1 -5682 826 526 2 708 204 40 0 0 chr6 16171255 16171280 -133345757 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 708 1004 313 79 84 chr6 16171280 16171772 -133345265 - L1MCa LINE L1 -5983 525 30 2 708 413 268 76 48 chr6 16172152 16172297 -133344740 - MLT1A0 LTR MaLR -186 179 31 2 708 245 307 118 82 chr6 16172337 16172582 -133344455 + MLT1B LTR MaLR 67 320 -70 2 708 358 314 0 29 chr6 16172816 16172921 -133344116 - PB1D7 SINE Alu 0 120 19 2 708 1037 305 70 9 chr6 16172927 16173271 -133343766 - MTEa LTR MaLR -14 365 1 2 708 271 371 86 0 chr6 16173328 16173444 -133343593 + B1F SINE Alu 1 126 -23 2 708 467 107 0 13 chr6 16173447 16173523 -133343514 + (GGA)n Simple_repeat Simple_repeat 2 76 0 2 708 36 0 0 0 chr6 16174264 16174300 -133342737 + AT_rich Low_complexity Low_complexity 1 36 0 2 708 261 57 0 0 chr6 16174300 16174335 -133342702 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 708 729 34 0 0 chr6 16174335 16174422 -133342615 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 708 185 313 147 15 chr6 16174602 16174670 -133342367 - L2b LINE L2 -97 3278 3202 2 708 363 130 0 0 chr6 16176665 16176742 -133340295 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 708 270 81 0 0 chr6 16176742 16176779 -133340258 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 708 1977 62 0 15 chr6 16177369 16177629 -133339408 + L1_Mus2 LINE L1 6311 6566 0 2 708 25 31 0 0 chr6 16178072 16178104 -133338933 + AT_rich Low_complexity Low_complexity 1 32 0 2 708 342 101 49 25 chr6 16179510 16179548 -133337489 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 2 708 603 51 0 0 chr6 16179548 16179627 -133337410 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 708 342 101 49 25 chr6 16179627 16179669 -133337368 + (TCTCTG)n Simple_repeat Simple_repeat 2 45 0 2 708 1125 83 0 0 chr6 16179672 16179852 -133337185 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 708 728 312 99 13 chr6 16180015 16180317 -133336720 + MLT1B LTR MaLR 44 371 -19 2 708 673 315 48 15 chr6 16180319 16180516 -133336521 + MTD LTR MaLR 1 204 -215 2 708 710 250 7 14 chr6 16180516 16180662 -133336375 + B1_Mur4 SINE Alu 1 145 -5 2 708 495 48 0 0 chr6 16180665 16180727 -133336310 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 708 192 97 0 0 chr6 16180732 16180763 -133336274 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 2 708 395 305 75 108 chr6 16180794 16181007 -133336030 + MTD LTR MaLR 214 419 0 2 708 809 333 57 57 chr6 16181665 16181820 -133335217 - MTE2b LTR MaLR -4 375 207 2 708 1104 108 47 26 chr6 16181820 16182010 -133335027 + B2_Mm2 SINE B2 1 194 -1 2 708 809 333 57 57 chr6 16182010 16182172 -133334865 - MTE2b LTR MaLR -173 206 58 2 708 379 200 0 174 chr6 16182172 16182281 -133334756 - MTE2b LTR MaLR -281 98 9 2 708 2278 269 59 10 chr6 16182299 16182555 -133334482 - MTE2b-int LTR MaLR -11 1569 1302 2 708 450 0 0 0 chr6 16182555 16182605 -133334432 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 708 2278 269 59 10 chr6 16182605 16182961 -133334076 - MTE2b-int LTR MaLR -279 1301 928 2 708 546 16 0 0 chr6 16182993 16183056 -133333981 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 708 699 293 59 66 chr6 16183527 16183813 -133333224 - MTE2b-int LTR MaLR -687 893 610 2 708 1910 216 80 155 chr6 16183813 16184587 -133332450 + RMER6D LTR ERVK 1 716 -4 2 708 1464 328 57 24 chr6 16184591 16184731 -133332306 - MTE2b-int LTR MaLR -966 614 457 2 708 514 63 12 12 chr6 16184731 16184811 -133332226 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 708 1464 328 57 24 chr6 16184811 16185162 -133331875 - MTE2b-int LTR MaLR -1124 456 103 2 708 2477 161 182 8 chr6 16185162 16185750 -133331287 - RMER6C LTR ERVK 0 690 1 2 708 1464 328 57 24 chr6 16185750 16185851 -133331186 - MTE2b-int LTR MaLR -1478 102 2 2 708 198 0 0 0 chr6 16185862 16185884 -133331153 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 708 560 257 131 22 chr6 16185885 16186068 -133330969 - MTE2b LTR MaLR -7 372 170 2 708 2713 181 126 35 chr6 16186068 16186726 -133330311 - Lx4B LINE L1 -1236 5822 5105 2 708 3128 229 37 14 chr6 16186729 16187465 -133329572 + Lx5 LINE L1 6298 7050 0 2 708 263 164 0 16 chr6 16188169 16188231 -133328806 + GA-rich Low_complexity Low_complexity 2 62 0 2 708 279 0 0 0 chr6 16188385 16188416 -133328621 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 708 279 0 0 0 chr6 16188710 16188741 -133328296 + (A)n Simple_repeat Simple_repeat 1 31 0 2 708 26 0 0 0 chr6 16188779 16188805 -133328232 + AT_rich Low_complexity Low_complexity 1 26 0 2 708 738 133 25 16 chr6 16188814 16188936 -133328101 - B1_Mus2 SINE Alu -17 130 8 2 708 287 205 73 146 chr6 16188832 16188969 -133328068 - MT2B LTR ERVL -337 264 138 2 708 296 236 178 0 chr6 16189671 16189828 -133327209 + L1MC4a LINE L1 7675 7859 -23 2 708 17010 168 31 19 chr6 16190462 16192721 -133324316 + L1_Mus4 LINE L1 604 2866 -3017 2 708 593 61 12 0 chr6 16192721 16192803 -133324234 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 3 708 17010 169 35 22 chr6 16192803 16192836 -133324201 + L1_Mus4 LINE L1 2867 2886 -2997 2 708 1126 102 11 0 chr6 16192836 16193012 -133324025 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 708 17010 169 35 22 chr6 16193012 16195084 -133321953 + L1_Mus4 LINE L1 2887 5025 -858 2 708 9026 46 2 0 chr6 16195079 16196415 -133320622 - L1Md_F3 LINE L1 -546 6038 4700 3 708 4496 35 0 4 chr6 16196415 16197025 -133320012 + L1Md_F3 LINE L1 6041 6584 0 3 708 4730 141 16 23 chr6 16197025 16197371 -133319666 + L1_Mus4 LINE L1 5021 5355 -528 2 708 467 115 35 0 chr6 16197371 16197458 -133319579 + L1Md_F2 LINE L1 6493 6582 0 3 708 6599 116 14 11 chr6 16197458 16198737 -133318300 + L1_Mus4 LINE L1 5356 6636 0 2 708 240 111 0 0 chr6 16198995 16199040 -133317997 + (A)n Simple_repeat Simple_repeat 1 45 0 3 708 7005 72 23 3 chr6 16199291 16200441 -133316596 + L1_Mus2 LINE L1 5388 6565 -1 3 708 272 267 11 22 chr6 16201214 16201306 -133315731 + GA-rich Low_complexity Low_complexity 2 92 0 3 708 1016 72 14 54 chr6 16201458 16201606 -133315431 + B1_Mus2 SINE Alu 4 145 -2 3 708 266 298 0 12 chr6 16202155 16202229 -133314808 + MIRc SINE MIR 52 121 -141 3 708 1161 42 7 7 chr6 16202601 16202746 -133314291 + B1_Mm SINE Alu 3 147 0 3 708 30703 88 5 11 chr6 16203276 16208880 -133308157 + L1Md_F2 LINE L1 66 5586 -297 3 708 8199 45 0 6 chr6 16208881 16209881 -133307156 + L1Md_F2 LINE L1 5588 6581 -1 3 708 442 368 109 16 chr6 16210274 16210531 -133306506 + B4 SINE B4 6 286 -6 3 708 3713 50 42 0 chr6 16210762 16211218 -133305819 + MT2C_Mm LTR ERVL 1 475 0 3 708 18979 62 22 13 chr6 16211218 16212381 -133304656 + MERVL-int LTR ERVL 1 1139 -4346 3 708 3240 49 5 0 chr6 16212381 16212771 -133304266 + MTA_Mm LTR MaLR 1 392 -4 3 708 18979 62 22 13 chr6 16212771 16214203 -133302834 + MERVL-int LTR ERVL 1140 2620 -2865 3 708 7947 46 5 0 chr6 16214200 16215200 -133301837 + MERVL-int LTR ERVL 2928 3932 -1553 3 708 5623 80 1 8 chr6 16215199 16215959 -133301078 + MERVL-int LTR ERVL 4441 5200 -285 3 708 2877 52 3 64 chr6 16215959 16216348 -133300689 + RLTR10B2 LTR ERVK 1 365 0 3 708 5623 80 1 8 chr6 16216348 16216373 -133300664 + MERVL-int LTR ERVL 5201 5221 -264 3 708 1232 86 6 6 chr6 16216373 16216523 -133300514 + MMERVK10C-int LTR ERVK 1 175 -7406 3 708 380 100 52 52 chr6 16216623 16216739 -133300298 + GA-rich Low_complexity Low_complexity 3 118 0 3 708 2789 52 106 0 chr6 16216739 16217127 -133299910 + RLTR10-int LTR ERVK 566 994 -993 3 708 408 298 65 32 chr6 16217265 16217534 -133299503 + IAP-d-int LTR ERVK 822 1012 -5530 3 708 1353 117 108 0 chr6 16217536 16217767 -133299270 + IAP-d-int LTR ERVK 5001 5256 -1286 3 708 375 244 0 11 chr6 16217762 16217853 -133299184 + MMERVK10C-int LTR ERVK 6962 7051 -530 3 708 8625 30 1 0 chr6 16217860 16219603 -133297434 - L1Md_T LINE L1 -2 6580 4836 3 708 1798 62 0 0 chr6 16219603 16219829 -133297208 + MT2C_Mm LTR ERVL 250 475 0 3 708 324 0 0 0 chr6 16219908 16219944 -133297093 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 708 806 177 17 52 chr6 16220448 16220621 -133296416 - URR1A DNA MER1_type -1 225 59 3 708 22 0 0 0 chr6 16221995 16222017 -133295020 + AT_rich Low_complexity Low_complexity 1 22 0 3 708 27 49 0 0 chr6 16223591 16223632 -133293405 + AT_rich Low_complexity Low_complexity 1 41 0 3 708 351 0 0 0 chr6 16223669 16223708 -133293329 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 3 708 1249 171 5 14 chr6 16224691 16224910 -133292127 + RMER6A LTR ERVK 1 217 -539 3 708 1183 90 28 17 chr6 16224912 16225092 -133291945 - Lx LINE L1 -646 6008 5827 3 708 1143 42 0 0 chr6 16225086 16225228 -133291809 - Lx2A LINE L1 -1278 5730 5589 3 708 422 301 77 87 chr6 16225241 16225539 -133291498 - RLTR9A LTR ERVK 0 368 74 3 708 841 285 19 13 chr6 16226010 16226319 -133290718 + RLTR6-int LTR ERV1 7303 7613 -165 3 708 1110 144 0 36 chr6 16226319 16226542 -133290495 + Lx LINE L1 6440 6654 0 3 708 424 151 14 0 chr6 16226553 16226626 -133290411 + RMER6A LTR ERVK 203 276 -480 3 708 2324 202 30 27 chr6 16226627 16227101 -133289936 + RMER19C LTR ERVK 1 475 -136 3 708 228 67 0 0 chr6 16227112 16227142 -133289895 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 3 708 1107 62 7 0 chr6 16227144 16227289 -133289748 - B1_Mm SINE Alu 0 147 2 3 708 7203 82 7 8 chr6 16227301 16228933 -133288104 - L1_Mus1 LINE L1 -1 6566 4939 3 708 725 191 32 19 chr6 16228933 16229088 -133287949 + RMER19C LTR ERVK 452 608 -3 3 708 802 188 156 44 chr6 16229106 16229356 -133287681 + RMER6A LTR ERVK 479 756 0 3 708 4138 42 15 4 chr6 16229898 16230426 -133286611 - LTRIS_Mus LTR ERV1 -53 534 1 3 708 3180 160 45 28 chr6 16230811 16231414 -133285623 - Lx2B LINE L1 -2 6998 6386 3 708 27 49 0 0 chr6 16232935 16232976 -133284061 + AT_rich Low_complexity Low_complexity 1 41 0 3 708 739 207 14 0 chr6 16233090 16233235 -133283802 + B1_Mur3 SINE Alu 2 148 -1 3 708 298 338 135 42 chr6 16233960 16234272 -133282765 - LTR16B LTR ERVL 0 463 123 3 708 468 0 0 0 chr6 16235131 16235183 -133281854 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 708 354 45 0 0 chr6 16235183 16235226 -133281811 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 708 21 0 0 0 chr6 16235276 16235297 -133281740 + AT_rich Low_complexity Low_complexity 1 21 0 3 708 186 43 0 0 chr6 16235477 16235500 -133281537 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 708 649 295 28 28 chr6 16235765 16235943 -133281094 + B3 SINE B2 33 210 -6 3 708 1222 255 109 13 chr6 16236110 16236486 -133280551 + MTD LTR MaLR 5 405 -14 3 708 382 287 69 73 chr6 16236508 16236726 -133280311 + L1MB1 LINE L1 5968 6184 -5 3 708 884 63 167 0 chr6 16236727 16236853 -133280184 + B1_Mus1 SINE Alu 2 148 0 3 708 348 24 0 0 chr6 16236862 16236903 -133280134 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 708 968 39 8 0 chr6 16237126 16237255 -133279782 + (TG)n Simple_repeat Simple_repeat 2 131 0 3 708 260 326 130 0 chr6 16238994 16239132 -133277905 - MIR SINE MIR -21 241 86 3 708 1780 164 74 3 chr6 16239209 16239575 -133277462 - ORR1B1 LTR MaLR 0 394 3 3 708 279 335 54 30 chr6 16239750 16239916 -133277121 - MIR SINE MIR -87 175 6 3 708 32 0 0 0 chr6 16241486 16241518 -133275519 + AT_rich Low_complexity Low_complexity 1 32 0 3 708 691 333 17 45 chr6 16242735 16242984 -133274053 + B4A SINE B4 2 250 -42 3 708 2121 130 9 9 chr6 16242984 16243311 -133273726 + ORR1A2 LTR MaLR 1 327 0 3 708 691 333 17 45 chr6 16243311 16243353 -133273684 + B4A SINE B4 251 285 -7 3 708 486 0 0 0 chr6 16243400 16243454 -133273583 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 708 1007 212 236 103 chr6 16244605 16245253 -133271784 - RMER6A LTR ERVK -4 716 1 3 708 251 286 242 0 chr6 16245375 16245536 -133271501 + L1MD1 LINE L1 5576 5775 -584 3 708 282 239 77 33 chr6 16245977 16246068 -133270969 + L1MD1 LINE L1 5833 5927 -315 3 708 591 53 0 0 chr6 16246111 16246186 -133270851 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 708 671 220 21 55 chr6 16246187 16246354 -133270683 - B3 SINE B2 -35 163 2 3 708 657 330 28 0 chr6 16246595 16246777 -133270260 - B3 SINE B2 -25 191 5 3 708 22 103 0 0 chr6 16246865 16246943 -133270094 + AT_rich Low_complexity Low_complexity 1 78 0 3 708 1766 138 20 117 chr6 16247027 16247327 -133269710 + ORR1B1 LTR MaLR 39 308 -86 3 708 2600 40 0 0 chr6 16247327 16247648 -133269389 + L1Md_F2 LINE L1 6262 6582 0 3 708 1766 138 20 117 chr6 16247648 16247741 -133269296 + ORR1B1 LTR MaLR 309 394 0 3 708 1414 238 58 39 chr6 16247769 16248096 -133268941 - Lx7 LINE L1 -1 7695 7361 3 708 200 35 35 0 chr6 16248096 16248125 -133268912 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 3 708 1414 238 58 39 chr6 16248125 16248282 -133268755 - Lx7 LINE L1 -336 7360 7202 3 708 4090 222 122 12 chr6 16248277 16249633 -133267404 - Lx7 LINE L1 -597 7099 5543 3 88 35422 42 1 3 chr6 16249671 16254801 -133262236 + L1Md_T LINE L1 374 5589 -297 3 709 8887 7 0 3 chr6 16254801 16255800 -133261237 + L1Md_T LINE L1 5590 6585 0 3 709 34855 41 1 0 chr6 16255811 16260137 -133256900 + L1Md_T LINE L1 1257 5584 -299 3 709 8415 35 0 0 chr6 16260140 16261135 -133255902 + L1Md_T LINE L1 5588 6582 0 3 709 253 319 0 15 chr6 16261211 16261318 -133255719 + B1_Mur1 SINE Alu 6 141 -8 3 709 213 324 90 54 chr6 16261425 16261647 -133255390 + B4A SINE B4 53 282 -10 3 709 456 253 93 22 chr6 16261788 16261970 -133255067 - Lx5 LINE L1 0 7050 6856 3 709 889 92 17 26 chr6 16263691 16263929 -133253108 + (CA)n Simple_repeat Simple_repeat 1 235 0 3 709 22 0 0 0 chr6 16264137 16264159 -133252878 + AT_rich Low_complexity Low_complexity 1 22 0 3 709 285 238 0 0 chr6 16264941 16265021 -133252016 + (CA)n Simple_repeat Simple_repeat 2 81 0 3 709 260 339 8 34 chr6 16266568 16266687 -133250350 + GA-rich Low_complexity Low_complexity 2 117 0 3 709 21 0 0 0 chr6 16266875 16266896 -133250141 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 653 66 11 0 chr6 16267610 16267701 -133249336 + (GA)n Simple_repeat Simple_repeat 1 92 0 3 709 498 295 35 41 chr6 16269350 16269495 -133247542 + B1_Mur2 SINE Alu 6 149 0 3 709 366 115 0 0 chr6 16269520 16269581 -133247456 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 709 329 344 70 52 chr6 16270160 16270332 -133246705 - B3A SINE B2 -16 182 8 3 709 267 360 119 6 chr6 16270683 16270859 -133246178 + MIR SINE MIR 28 223 -39 3 709 345 337 0 19 chr6 16271698 16271804 -133245233 + MER5A DNA MER1_type 81 184 -5 3 709 549 281 109 30 chr6 16271823 16272025 -133245012 + MIRb SINE MIR 45 262 -6 3 709 223 255 10 60 chr6 16272123 16272223 -133244814 - BC1_Mm scRNA scRNA -50 102 8 3 709 371 273 19 51 chr6 16272576 16272693 -133244344 - PB1D10 SINE Alu -4 123 1 3 709 388 124 49 8 chr6 16272696 16272710 -133244327 + A-rich Low_complexity Low_complexity 2 15 0 3 709 1213 41 0 7 chr6 16272710 16272857 -133244180 + B1_Mus2 SINE Alu 2 147 0 3 709 388 124 49 8 chr6 16272857 16272964 -133244073 + A-rich Low_complexity Low_complexity 16 128 0 3 709 241 344 221 0 chr6 16273358 16273480 -133243557 + RSINE1 SINE B4 3 151 -14 3 709 180 0 0 0 chr6 16273482 16273502 -133243535 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 709 402 277 111 22 chr6 16275201 16275382 -133241655 + B3A SINE B2 1 197 -1 3 709 517 317 12 24 chr6 16275596 16275761 -133241276 - RSINE1 SINE B4 0 165 3 3 709 21 57 0 0 chr6 16276030 16276065 -133240972 + AT_rich Low_complexity Low_complexity 1 35 0 3 709 365 169 0 12 chr6 16276577 16276661 -133240376 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 709 333 256 62 97 chr6 16277378 16277573 -133239464 + MER58A DNA MER1_type 28 326 -15 3 709 210 174 22 0 chr6 16280306 16280352 -133236685 + (TCTCTG)n Simple_repeat Simple_repeat 5 51 0 3 709 219 36 0 0 chr6 16280367 16280395 -133236642 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 3 709 378 0 0 0 chr6 16280395 16280437 -133236600 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 709 22 0 0 0 chr6 16281314 16281336 -133235701 + AT_rich Low_complexity Low_complexity 1 22 0 4 709 27 73 0 0 chr6 16281556 16281611 -133235426 + AT_rich Low_complexity Low_complexity 1 55 0 4 709 261 0 0 0 chr6 16281943 16281972 -133235065 + (A)n Simple_repeat Simple_repeat 1 29 0 4 709 274 302 70 0 chr6 16285679 16285765 -133231272 - L2c LINE L2 -74 3313 3222 4 709 182 37 37 0 chr6 16285805 16285832 -133231205 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 4 709 250 288 56 35 chr6 16286342 16286458 -133230579 - MLT1J2 LTR MaLR -329 183 24 4 709 187 376 26 0 chr6 16287144 16287261 -133229776 + MIR SINE MIR 135 254 -8 4 709 298 353 73 0 chr6 16287665 16287815 -133229222 - RMER15 LTR ERVL -43 532 372 4 709 600 250 21 106 chr6 16288027 16288264 -133228773 - Lx9 LINE L1 -461 7183 6967 4 709 731 229 10 41 chr6 16288597 16288793 -133228244 + Lx4B LINE L1 6207 6396 -662 4 709 880 192 16 26 chr6 16288764 16288956 -133228081 + Lx4B LINE L1 6624 6813 -245 4 709 35 24 0 0 chr6 16289306 16289348 -133227689 + AT_rich Low_complexity Low_complexity 1 42 0 4 709 225 289 35 35 chr6 16289794 16289880 -133227157 + Lx8 LINE L1 7193 7278 -195 4 709 301 156 13 13 chr6 16289920 16289998 -133227039 + GA-rich Low_complexity Low_complexity 2 79 0 4 709 356 0 0 0 chr6 16290722 16290762 -133226275 + HAL1-3A_ME LINE L1 1973 2012 -846 4 709 630 71 0 0 chr6 16290763 16290847 -133226190 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 709 278 219 0 45 chr6 16291587 16291654 -133225383 - LTR48 LTR ERV1 -719 68 5 4 709 363 331 45 86 chr6 16291776 16292067 -133224970 + MLT1J LTR MaLR 200 478 -34 4 709 774 333 0 0 chr6 16292716 16292905 -133224132 - B3A SINE B2 -8 190 2 4 709 191 32 65 0 chr6 16293632 16293663 -133223374 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 709 204 241 76 98 chr6 16294081 16294173 -133222864 + L2c LINE L2 3290 3379 -8 4 709 816 318 59 57 chr6 16294563 16294950 -133222087 - MLT1A1 LTR MaLR 0 408 21 4 709 380 330 138 29 chr6 16295151 16295426 -133221611 + L1MD3 LINE L1 6407 6711 -1171 4 709 326 317 104 22 chr6 16295536 16295823 -133221214 + L1MD3 LINE L1 7035 7331 -664 4 709 452 326 38 98 chr6 16295978 16296345 -133220692 + L1MD3 LINE L1 7535 7938 -57 4 709 1080 323 49 22 chr6 16296458 16296825 -133220212 + Lx8 LINE L1 6953 7329 -144 4 709 1195 115 0 0 chr6 16296837 16297002 -133220035 - Lx4B LINE L1 -430 6628 6464 4 709 2724 143 2 48 chr6 16296999 16297499 -133219538 + L1_Mur2 LINE L1 4929 5405 -472 4 709 186 43 0 0 chr6 16297881 16297904 -133219133 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 709 198 192 0 0 chr6 16298020 16298072 -133218965 + T-rich Low_complexity Low_complexity 1 52 0 4 709 600 14 0 0 chr6 16298606 16298675 -133218362 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 709 386 283 127 6 chr6 16299003 16299184 -133217853 - MTEa LTR MaLR -4 375 173 4 709 21 0 0 0 chr6 16299332 16299353 -133217684 + AT_rich Low_complexity Low_complexity 1 21 0 4 709 2697 114 7 17 chr6 16299354 16299774 -133217263 - Lx3A LINE L1 0 6981 6566 4 709 300 364 61 18 chr6 16300593 16300758 -133216279 + L2a LINE L2 2291 2462 -957 4 709 1042 103 0 0 chr6 16301044 16301189 -133215848 + B1_Mus2 SINE Alu 2 146 -1 4 709 277 109 0 30 chr6 16301189 16301255 -133215782 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 4 709 186 322 52 46 chr6 16301356 16301509 -133215528 + L2a LINE L2 3178 3331 -95 4 709 231 274 52 10 chr6 16301509 16301605 -133215432 - LTR84a LTR ERVL -421 336 237 4 709 215 89 65 22 chr6 16301965 16302011 -133215026 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 4 709 255 196 0 0 chr6 16302020 16302066 -133214971 - MTEa LTR MaLR -162 165 120 4 709 516 16 0 0 chr6 16302515 16302576 -133214461 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 709 5706 215 58 18 chr6 16302645 16302749 -133214288 - Lx5 LINE L1 -5 7045 6938 4 709 2242 150 79 26 chr6 16302749 16303207 -133213830 + RLTR45 LTR ERVK 1 482 0 4 709 5706 215 58 18 chr6 16303207 16304328 -133212709 - Lx5 LINE L1 -113 6937 5771 4 709 615 226 52 23 chr6 16304589 16304761 -133212276 - Lx7 LINE L1 0 7696 7520 4 709 16616 166 49 52 chr6 16304774 16305406 -133211631 - L1_Mur2 LINE L1 -821 5056 4370 4 709 198 0 0 0 chr6 16305406 16305428 -133211609 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 709 16616 166 49 52 chr6 16305428 16306343 -133210694 - L1_Mur2 LINE L1 -1508 4369 3459 4 709 222 37 0 0 chr6 16306343 16306370 -133210667 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 709 16616 166 49 52 chr6 16306370 16306459 -133210578 - L1_Mur2 LINE L1 -2419 3458 3417 4 709 1097 83 7 0 chr6 16306459 16306604 -133210433 - B1_Mm SINE Alu 0 147 2 4 709 16616 169 77 51 chr6 16306604 16309070 -133207967 - L1_Mur2 LINE L1 -2461 3416 892 4 709 1175 177 145 18 chr6 16309517 16309793 -133207244 - ORR1A4 LTR MaLR 0 329 19 4 709 2343 131 38 59 chr6 16309772 16310249 -133206788 - IAPLTR2_Mm LTR ERVK -8 467 1 4 709 355 147 71 29 chr6 16310249 16310316 -133206721 - MTEa LTR MaLR -259 70 1 4 709 225 108 0 0 chr6 16310513 16310550 -133206487 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 709 334 364 52 64 chr6 16310854 16311027 -133206010 + B4A SINE B4 5 175 -117 4 709 2432 132 23 15 chr6 16312028 16312427 -133204610 - RLTR9D LTR ERVK 0 403 2 4 709 1150 75 0 0 chr6 16312467 16312614 -133204423 + B1_Mus1 SINE Alu 2 148 0 4 709 239 171 0 0 chr6 16312614 16312655 -133204382 + A-rich Low_complexity Low_complexity 1 41 0 4 709 1159 273 112 3 chr6 16312991 16313311 -133203726 + ORR1D2 LTR MaLR 1 355 -15 4 709 5772 90 7 21 chr6 16313311 16314148 -133202889 + Lx LINE L1 5829 6653 -1 4 709 681 296 50 8 chr6 16314452 16314714 -133202323 + Lx9 LINE L1 7157 7429 -215 4 709 28 0 0 0 chr6 16314817 16314845 -133202192 + AT_rich Low_complexity Low_complexity 1 28 0 4 709 719 48 0 0 chr6 16315921 16316024 -133201013 - L1Md_T LINE L1 0 6582 6480 4 709 450 244 0 0 chr6 16316265 16316384 -133200653 + (TA)n Simple_repeat Simple_repeat 2 120 0 4 709 208 254 0 0 chr6 16316419 16316474 -133200563 + (TTAA)n Simple_repeat Simple_repeat 1 55 0 4 709 183 42 0 0 chr6 16317466 16317490 -133199547 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 709 583 305 139 44 chr6 16317964 16318200 -133198837 - RLTR12B LTR ERVK -24 504 234 4 709 491 0 17 0 chr6 16318200 16318259 -133198778 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 709 583 305 139 44 chr6 16318259 16318475 -133198562 - RLTR12B LTR ERVK -295 233 9 4 709 522 42 0 14 chr6 16318480 16318552 -133198485 + B1_Mus2 SINE Alu 77 147 0 4 709 297 51 68 0 chr6 16318575 16318634 -133198403 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 709 251 232 60 10 chr6 16320019 16320119 -133196918 - L1MA6 LINE L1 -7 6293 6189 4 709 1144 78 0 0 chr6 16320133 16320287 -133196750 - L1_Mus2 LINE L1 -1 6565 6412 4 709 710 23 11 0 chr6 16320493 16320581 -133196456 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 4 709 26 74 0 0 chr6 16321288 16321342 -133195695 + AT_rich Low_complexity Low_complexity 1 54 0 4 709 28 0 0 0 chr6 16321451 16321479 -133195558 + AT_rich Low_complexity Low_complexity 1 28 0 4 709 659 363 19 40 chr6 16321659 16322038 -133194999 - Lx7 LINE L1 -382 7314 6944 4 709 888 291 34 107 chr6 16322039 16322450 -133194587 + Lx7 LINE L1 6566 6946 -750 4 709 23 0 0 0 chr6 16322521 16322544 -133194493 + AT_rich Low_complexity Low_complexity 1 23 0 4 709 404 284 83 0 chr6 16322799 16322908 -133194129 - B3A SINE B2 -14 202 85 4 709 24690 178 24 18 chr6 16322951 16324253 -133192784 + Lx3C LINE L1 742 2061 -3825 4 709 288 0 0 0 chr6 16324253 16324285 -133192752 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 709 24690 159 23 11 chr6 16324285 16327549 -133189488 + Lx3C LINE L1 2062 5363 -523 4 709 2755 73 44 5 chr6 16327549 16327932 -133189105 + L1Md_F2 LINE L1 6185 6582 0 4 709 24690 160 27 17 chr6 16327932 16329520 -133187517 + Lx3C LINE L1 5364 6961 -15 4 709 477 50 0 0 chr6 16329532 16329592 -133187445 + (CAA)n Simple_repeat Simple_repeat 1 60 0 4 709 22 0 0 0 chr6 16330664 16330686 -133186351 + AT_rich Low_complexity Low_complexity 1 22 0 4 709 219 358 0 0 chr6 16331654 16331735 -133185302 + MIR SINE MIR 178 258 -4 4 709 185 320 40 0 chr6 16331970 16332020 -133185017 + L3 LINE CR1 4388 4439 -50 4 709 386 293 40 10 chr6 16332220 16332420 -133184617 + L1M6 LINE L1 1130 1335 -5161 4 709 21 0 0 0 chr6 16332995 16333016 -133184021 + AT_rich Low_complexity Low_complexity 1 21 0 4 709 229 301 96 17 chr6 16333227 16333342 -133183695 - MLT1B LTR MaLR -4 370 247 4 709 474 339 80 11 chr6 16333393 16333581 -133183456 - MLT1B LTR MaLR -189 201 1 4 709 27 81 0 0 chr6 16333720 16333782 -133183255 + AT_rich Low_complexity Low_complexity 1 62 0 4 709 6480 54 12 0 chr6 16333886 16334684 -133182353 - RLTR13C2 LTR ERVK 0 808 1 4 709 1475 190 41 72 chr6 16334775 16334887 -133182150 + L1_Mur2 LINE L1 1937 2047 -3830 4 709 387 0 0 0 chr6 16334887 16334930 -133182107 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 709 1475 190 41 72 chr6 16334930 16335260 -133181777 + L1_Mur2 LINE L1 2048 2365 -3512 4 709 11173 92 63 21 chr6 16335259 16336916 -133180121 + L1VL4 LINE L1 1019 2788 -1126 4 709 291 54 0 0 chr6 16336916 16336953 -133180084 + (CAA)n Simple_repeat Simple_repeat 1 37 0 4 709 11173 100 78 26 chr6 16336953 16336983 -133180054 + L1VL4 LINE L1 2789 2806 -1108 4 709 261 75 0 0 chr6 16336983 16337023 -133180014 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4 709 11173 100 78 26 chr6 16337023 16337102 -133179935 + L1VL4 LINE L1 2807 2864 -1050 4 709 696 24 0 0 chr6 16337102 16337184 -133179853 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 4 709 11173 150 280 22 chr6 16337184 16338094 -133178943 + L1VL4 LINE L1 2865 3203 -711 4 709 2803 84 17 7 chr6 16338094 16338501 -133178536 - L1_Mus2 LINE L1 -1 6565 6155 4 709 10649 149 159 10 chr6 16338501 16340167 -133176870 + Lx2 LINE L1 4945 6645 -352 4 709 1206 156 5 0 chr6 16340156 16340355 -133176682 + Lx2 LINE L1 6765 6964 -33 4 709 316 253 0 13 chr6 16340388 16340464 -133176573 - MTD LTR MaLR -36 383 309 4 709 519 17 0 0 chr6 16340798 16340858 -133176179 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 709 339 25 0 0 chr6 16340858 16340897 -133176140 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 709 35361 35 0 0 chr6 16341070 16346728 -133170309 + L1Md_T LINE L1 1 5589 -297 4 709 8993 5 0 0 chr6 16346728 16347724 -133169313 + L1Md_T LINE L1 5590 6585 0 4 709 592 246 48 27 chr6 16347842 16348030 -133169007 - B2_Mm2 SINE B2 -2 193 2 4 709 582 317 66 16 chr6 16348278 16348461 -133168576 + B3 SINE B2 2 193 -23 4 709 21 0 0 0 chr6 16348868 16348889 -133168148 + AT_rich Low_complexity Low_complexity 1 21 0 4 709 8541 25 0 0 chr6 16349237 16350437 -133166600 - L1Md_T LINE L1 0 6582 5422 4 709 306 64 49 37 chr6 16350999 16351080 -133165957 + T-rich Low_complexity Low_complexity 2 83 0 5 709 200 116 45 23 chr6 16352412 16352456 -133164581 + A-rich Low_complexity Low_complexity 3 47 0 5 709 1906 54 7 51 chr6 16352907 16353180 -133163857 + L1_Mus2 LINE L1 6304 6564 -2 5 709 590 26 13 0 chr6 16353190 16353266 -133163771 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 5 709 2879 205 58 5 chr6 16353266 16353834 -133163203 - Lx5 LINE L1 -14 7036 6439 5 709 248 132 0 0 chr6 16353828 16353866 -133163171 + Lx5 LINE L1 6400 6437 -613 5 709 1198 222 123 28 chr6 16356456 16356719 -133160318 + ORR1D1 LTR MaLR 17 312 -62 5 709 2379 104 100 15 chr6 16356719 16357109 -133159928 + L1_Mus3 LINE L1 6213 6635 -3 5 709 1198 222 123 28 chr6 16357109 16357169 -133159868 + ORR1D1 LTR MaLR 313 371 -3 5 709 316 304 119 16 chr6 16357603 16357854 -133159183 - MT2A LTR ERVL -3 530 254 5 709 229 362 46 78 chr6 16358130 16358283 -133158754 - MER20 DNA MER1_type 0 219 72 5 709 713 321 29 0 chr6 16358283 16358492 -133158545 + ORR1D2 LTR MaLR 3 217 -153 5 709 2999 84 5 2 chr6 16358530 16358948 -133158089 + BGLII LTR ERVK 1 419 -2 5 709 1402 135 18 0 chr6 16359050 16359279 -133157758 + Lx4B LINE L1 5653 5885 -1173 5 709 2362 223 14 29 chr6 16359276 16359826 -133157211 - Lx4B LINE L1 -592 6466 5925 5 709 288 0 0 0 chr6 16359892 16359924 -133157113 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 709 199 279 33 0 chr6 16360505 16360566 -133156471 + L2c LINE L2 3288 3350 -37 5 709 567 194 46 0 chr6 16360775 16360883 -133156154 + B1_Mus1 SINE Alu 29 141 -7 5 709 468 51 0 0 chr6 16360907 16360966 -133156071 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 709 3551 112 0 0 chr6 16361013 16361709 -133155328 - Lx LINE L1 -580 6074 5379 5 709 1206 191 16 4 chr6 16361710 16361962 -133155075 + Lx LINE L1 6398 6652 -2 5 709 324 70 0 0 chr6 16363405 16363448 -133153589 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 709 471 227 36 9 chr6 16363448 16363559 -133153478 - B1_Mur2 SINE Alu -11 138 25 5 709 332 119 17 0 chr6 16364905 16364964 -133152073 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 5 709 396 0 0 0 chr6 16365071 16365115 -133151922 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 709 2862 204 25 14 chr6 16365151 16365722 -133151315 + RLTR20B3 LTR ERVK 1 577 0 5 709 203 269 14 43 chr6 16367010 16367080 -133149957 - L2a LINE L2 -76 3350 3283 5 709 488 208 0 10 chr6 16367125 16367227 -133149810 + MTE2a LTR MaLR 279 379 0 5 709 4666 105 20 24 chr6 16367245 16368003 -133149034 - L1_Mm LINE L1 -1860 4023 3269 5 709 5749 68 1 3 chr6 16368004 16368747 -133148290 + L1_Mus2 LINE L1 5824 6565 -1 5 709 25 0 0 0 chr6 16368748 16368773 -133148264 + AT_rich Low_complexity Low_complexity 1 25 0 5 709 204 227 132 13 chr6 16369294 16369370 -133147667 - L2a LINE L2 -40 3386 3302 5 709 261 432 38 0 chr6 16371020 16371152 -133145885 + ID_B1 SINE B4 83 219 -5 5 709 252 86 0 0 chr6 16371747 16371782 -133145255 + (T)n Simple_repeat Simple_repeat 1 35 0 5 709 34911 75 1 22 chr6 16372521 16378762 -133138275 - L1Md_F2 LINE L1 -3 6579 476 5 709 26 50 0 0 chr6 16380080 16380120 -133136917 + AT_rich Low_complexity Low_complexity 1 40 0 5 709 243 262 214 0 chr6 16380658 16380742 -133136295 - MER5A DNA MER1_type 0 189 88 5 709 479 335 70 18 chr6 16380988 16381216 -133135821 - MLT1D LTR MaLR -263 242 3 5 709 2524 109 0 40 chr6 16381271 16381701 -133135336 - L1_Mus4 LINE L1 -468 6168 5827 5 709 1143 82 0 0 chr6 16381701 16381847 -133135190 - B1_Mus1 SINE Alu 0 148 3 5 709 9983 190 204 107 chr6 16381847 16383231 -133133806 - L1_Mus4 LINE L1 -1174 5834 4462 5 709 3064 114 9 6 chr6 16383231 16383698 -133133339 + L1_Mus4 LINE L1 6165 6632 -4 5 709 243 60 0 57 chr6 16383698 16383751 -133133286 + (TAA)n Simple_repeat Simple_repeat 2 51 0 5 709 9983 195 251 86 chr6 16383751 16383786 -133133251 - L1_Mus4 LINE L1 -1416 4461 4036 5 88 882 283 87 39 chr6 16383786 16384098 -133132939 + MTE2b LTR MaLR 1 327 -52 5 710 471 35 0 0 chr6 16384102 16384159 -133132878 + (GA)n Simple_repeat Simple_repeat 1 57 0 5 710 9983 195 251 86 chr6 16384159 16384532 -133132505 - L1_Mus4 LINE L1 -1846 4031 3168 5 710 5655 81 0 44 chr6 16384532 16385355 -133131682 - L1Md_F2 LINE L1 -3 6579 5793 5 710 13301 96 24 0 chr6 16385355 16388004 -133129033 - L1_Mus4 LINE L1 -2710 3167 366 5 710 507 261 47 83 chr6 16388039 16388231 -133128806 - B3A SINE B2 -9 186 2 5 710 14115 57 3 3 chr6 16388403 16390925 -133126112 - L1Md_F3 LINE L1 -16 6568 4048 5 710 5622 82 11 103 chr6 16390925 16392543 -133124494 - L1Md_F3 LINE L1 -3800 2083 621 5 710 590 217 171 0 chr6 16392549 16392678 -133124359 - B3 SINE B2 0 216 66 5 710 4053 223 57 35 chr6 16392685 16393491 -133123546 + Lx7 LINE L1 6586 7380 -316 5 710 537 16 0 0 chr6 16393491 16393553 -133123484 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 710 4053 223 57 35 chr6 16393553 16393833 -133123204 + Lx7 LINE L1 7381 7695 -1 5 710 333 234 0 0 chr6 16393853 16393917 -133123120 - B3A SINE B2 -130 68 5 5 710 21 36 0 0 chr6 16394906 16394934 -133122103 + AT_rich Low_complexity Low_complexity 1 28 0 5 710 600 73 0 0 chr6 16395129 16395211 -133121826 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 5 710 3206 60 0 8 chr6 16395380 16395782 -133121255 - L1Md_F2 LINE L1 -241 6341 5943 5 710 609 303 116 22 chr6 16396267 16396446 -133120591 + B4A SINE B4 1 204 -88 5 710 1706 141 50 22 chr6 16396446 16396765 -133120272 + Lx LINE L1 6320 6647 -7 5 710 609 303 116 22 chr6 16396765 16396852 -133120185 + B4A SINE B4 205 292 0 5 710 22 0 0 0 chr6 16397951 16397973 -133119064 + AT_rich Low_complexity Low_complexity 1 22 0 5 710 204 67 0 0 chr6 16398588 16398618 -133118419 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 710 647 207 0 7 chr6 16400549 16400700 -133116337 + (TA)n Simple_repeat Simple_repeat 1 150 0 5 710 989 182 121 0 chr6 16401762 16401960 -133115077 + URR1A DNA MER1_type 3 224 -2 5 710 965 251 74 0 chr6 16402918 16403201 -133113836 + Lx9 LINE L1 7265 7568 -76 5 710 350 231 0 103 chr6 16403436 16403523 -133113514 + B3A SINE B2 2 79 -119 5 710 2186 110 3 55 chr6 16403591 16403936 -133113101 - ORR1A2 LTR MaLR 0 327 1 5 710 1345 242 74 46 chr6 16404664 16405040 -133111997 - Lx7 LINE L1 0 7696 7307 5 710 426 20 0 0 chr6 16405040 16405091 -133111946 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 710 1345 242 74 46 chr6 16405091 16405172 -133111865 - Lx7 LINE L1 -390 7306 7226 5 710 353 78 0 0 chr6 16405174 16405225 -133111812 + L1_Mus2 LINE L1 6513 6563 -3 5 710 2038 226 47 11 chr6 16405382 16405848 -133111189 - Lx7 LINE L1 -460 7236 6754 5 710 1943 73 43 7 chr6 16405856 16406133 -133110904 - L1_Mus1 LINE L1 -1 6566 6280 5 710 3111 84 14 0 chr6 16406133 16406561 -133110476 + L1_Mus1 LINE L1 5812 6245 -321 5 710 4262 242 72 9 chr6 16406556 16407667 -133109370 - Lx7 LINE L1 -929 6767 5587 5 710 337 310 0 92 chr6 16407668 16407810 -133109227 + B4A SINE B4 164 292 0 5 710 22 35 0 0 chr6 16407831 16407860 -133109177 + AT_rich Low_complexity Low_complexity 1 29 0 5 710 398 344 76 68 chr6 16407979 16408285 -133108752 + MLT1D LTR MaLR 183 497 -8 5 710 701 302 31 13 chr6 16410273 16410501 -133106536 + B4A SINE B4 1 232 -60 5 710 414 0 0 0 chr6 16411449 16411495 -133105542 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 710 9777 94 15 3 chr6 16411584 16413028 -133104009 - Lx3_Mus LINE L1 -8 7001 5539 5 710 486 130 0 27 chr6 16413121 16413232 -133103805 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 5 710 321 195 110 0 chr6 16413678 16413760 -133103277 + Lx4B LINE L1 6103 6193 -865 5 710 1342 280 125 18 chr6 16413834 16414508 -133102529 + Lx6 LINE L1 6450 7434 -26 5 710 1026 129 0 0 chr6 16414521 16414684 -133102353 + (GAAA)n Simple_repeat Simple_repeat 4 166 0 5 710 471 218 0 0 chr6 16414688 16414830 -133102207 + GA-rich Low_complexity Low_complexity 1 142 0 5 710 28 29 0 0 chr6 16414997 16415032 -133102005 + AT_rich Low_complexity Low_complexity 1 35 0 5 710 402 21 0 0 chr6 16415880 16415927 -133101110 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 710 27 0 0 0 chr6 16416109 16416136 -133100901 + AT_rich Low_complexity Low_complexity 1 27 0 5 710 328 303 105 53 chr6 16416329 16416538 -133100499 - MIR SINE MIR -26 236 17 5 710 353 86 17 0 chr6 16416547 16416605 -133100432 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 710 24 67 0 0 chr6 16417613 16417658 -133099379 + AT_rich Low_complexity Low_complexity 1 45 0 5 710 221 83 0 27 chr6 16417890 16417927 -133099110 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 710 510 31 0 0 chr6 16418167 16418231 -133098806 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 710 185 326 92 0 chr6 16418500 16418598 -133098439 + MIRc SINE MIR 107 213 -55 5 710 25 31 0 0 chr6 16418688 16418720 -133098317 + AT_rich Low_complexity Low_complexity 1 32 0 5 710 247 342 101 50 chr6 16419891 16420168 -133096869 + L2 LINE L2 2718 3008 -411 5 710 1529 134 52 0 chr6 16421402 16421671 -133095366 + L1_Mur2 LINE L1 3884 4166 -1711 5 710 5728 150 34 4 chr6 16421678 16422804 -133094233 + Lx LINE L1 4777 5930 -724 5 710 318 289 96 32 chr6 16422963 16423088 -133093949 - MLT1J LTR MaLR -264 248 116 5 710 248 222 56 0 chr6 16423546 16423618 -133093419 - L2c LINE L2 -8 3379 3304 5 710 7393 153 24 21 chr6 16423893 16425298 -133091739 - L1_Mur1 LINE L1 -2001 3885 2477 5 710 352 360 0 0 chr6 16425498 16425584 -133091453 + PB1D10 SINE Alu 5 90 -27 5 710 447 281 4 80 chr6 16425690 16425866 -133091171 + Lx8 LINE L1 5532 5728 -1968 5 710 2129 174 56 10 chr6 16425873 16426268 -133090769 + MTC LTR MaLR 1 413 -8 5 710 238 200 39 26 chr6 16426271 16426348 -133090689 + Lx8 LINE L1 5728 5805 -1668 5 710 960 317 63 25 chr6 16426715 16427146 -133089891 + Lx8 LINE L1 6230 6676 -797 5 710 299 125 0 0 chr6 16427355 16427403 -133089634 + MTEa LTR MaLR 1 48 -331 5 710 549 330 0 15 chr6 16427868 16428065 -133088972 - B3A SINE B2 0 198 5 5 710 21 0 0 0 chr6 16428410 16428431 -133088606 + AT_rich Low_complexity Low_complexity 1 21 0 5 710 5130 83 0 1 chr6 16428925 16429796 -133087241 - L1VL4 LINE L1 -3983 1900 1032 5 710 6297 67 12 13 chr6 16429796 16430617 -133086420 + L1Md_F2 LINE L1 5752 6571 -11 5 710 226 224 0 15 chr6 16430629 16430697 -133086340 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 5 710 671 328 56 12 chr6 16430798 16431048 -133085989 - B4A SINE B4 -30 262 2 6 710 316 322 107 19 chr6 16431118 16431333 -133085704 + L2a LINE L2 3191 3424 -2 6 710 1104 100 0 0 chr6 16431592 16431752 -133085285 + (TTTC)n Simple_repeat Simple_repeat 3 162 0 6 710 432 0 0 0 chr6 16433272 16433320 -133083717 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 710 231 36 0 0 chr6 16433363 16433391 -133083646 + (T)n Simple_repeat Simple_repeat 1 28 0 6 710 21 57 0 0 chr6 16433755 16433790 -133083247 + AT_rich Low_complexity Low_complexity 1 35 0 6 710 387 0 0 0 chr6 16434659 16434702 -133082335 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 710 21 0 0 0 chr6 16435517 16435538 -133081499 + AT_rich Low_complexity Low_complexity 1 21 0 6 710 302 272 21 52 chr6 16435582 16435679 -133081358 + PB1 SINE Alu 34 127 0 6 710 1908 297 39 14 chr6 16436899 16437599 -133079438 + Lx9 LINE L1 6056 6935 -709 6 710 180 125 0 0 chr6 16437599 16437631 -133079406 + (T)n Simple_repeat Simple_repeat 1 32 0 6 710 34258 96 22 13 chr6 16437633 16443763 -133073274 - L1Md_F2 LINE L1 -2 6580 393 6 710 1507 280 119 26 chr6 16443761 16444384 -133072653 + Lx9 LINE L1 6920 7600 -44 6 710 31 0 0 0 chr6 16444405 16444436 -133072601 + AT_rich Low_complexity Low_complexity 1 31 0 6 710 1666 141 98 13 chr6 16445202 16445392 -133071645 + Lx2A1 LINE L1 6666 6858 -150 6 710 501 17 0 0 chr6 16445392 16445450 -133071587 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 710 1666 141 98 13 chr6 16445450 16445575 -133071462 + Lx2A1 LINE L1 6859 7007 -1 6 710 1857 241 124 29 chr6 16445989 16446118 -133070919 - Lx7 LINE L1 -4 7692 7558 6 710 470 17 0 17 chr6 16446118 16446178 -133070859 + (TAA)n Simple_repeat Simple_repeat 1 59 0 6 710 1857 241 124 29 chr6 16446178 16446367 -133070670 - Lx7 LINE L1 -139 7557 7335 6 710 231 36 0 0 chr6 16446367 16446395 -133070642 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 6 710 1857 241 124 29 chr6 16446395 16446728 -133070309 - Lx7 LINE L1 -362 7334 6980 6 710 518 0 16 0 chr6 16446830 16446892 -133070145 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 6 710 301 353 89 48 chr6 16446894 16447165 -133069872 - L2 LINE L2 -456 2963 2682 6 710 317 351 52 17 chr6 16447745 16447919 -133069118 + MER45B DNA Tip100 849 1028 -12 6 710 443 18 18 0 chr6 16448673 16448729 -133068308 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 710 450 94 0 0 chr6 16448784 16448848 -133068189 + (T)n Simple_repeat Simple_repeat 1 64 0 6 710 245 87 27 55 chr6 16449449 16449522 -133067515 + A-rich Low_complexity Low_complexity 2 72 0 6 710 13916 69 17 6 chr6 16450707 16453204 -133063833 - L1Md_F2 LINE L1 -1 6581 4051 6 710 717 199 53 8 chr6 16453504 16453636 -133063401 + B1_Mus2 SINE Alu 8 145 -2 6 710 216 86 0 0 chr6 16455010 16455045 -133061992 + (A)n Simple_repeat Simple_repeat 1 35 0 6 710 2376 186 91 48 chr6 16455119 16455466 -133061571 - RMER6C LTR ERVK 0 690 343 6 710 1284 47 0 0 chr6 16455466 16455638 -133061399 + (TC)n Simple_repeat Simple_repeat 1 172 0 6 710 2376 186 91 48 chr6 16455638 16455952 -133061085 - RMER6C LTR ERVK -348 342 1 6 710 26 30 0 0 chr6 16457073 16457106 -133059931 + AT_rich Low_complexity Low_complexity 1 33 0 6 710 192 277 64 0 chr6 16457834 16457881 -133059156 - L2b LINE L2 -9 3366 3317 6 710 442 332 98 33 chr6 16458252 16458526 -133058511 - L2b LINE L2 -407 3012 2721 6 710 216 195 0 105 chr6 16458902 16458917 -133058120 + (TATAA)n Simple_repeat Simple_repeat 1 14 0 6 710 3824 175 153 8 chr6 16458917 16459710 -133057327 - RMER13B LTR ERVK 0 908 1 6 710 216 195 0 105 chr6 16459710 16459780 -133057257 + (TATAA)n Simple_repeat Simple_repeat 5 67 0 6 710 264 213 0 0 chr6 16459782 16459843 -133057194 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 710 224 338 0 0 chr6 16459917 16459988 -133057049 + L2a LINE L2 3354 3424 -2 6 710 601 354 85 48 chr6 16460194 16460784 -133056253 + L2 LINE L2 2469 3080 -339 6 710 2957 48 216 2 chr6 16461723 16462145 -133054892 - RLTR1B LTR ERV1 0 512 1 6 710 557 200 15 0 chr6 16462455 16462585 -133054452 + GA-rich Low_complexity Low_complexity 3 134 0 6 710 616 56 11 11 chr6 16462587 16462677 -133054360 + (GAGAA)n Simple_repeat Simple_repeat 4 93 0 6 710 22 35 0 0 chr6 16462704 16462733 -133054304 + AT_rich Low_complexity Low_complexity 1 29 0 6 710 293 190 0 17 chr6 16462767 16462826 -133054211 + L1MEc LINE L1 785 842 -5558 6 710 711 90 0 0 chr6 16463562 16463662 -133053375 + (TC)n Simple_repeat Simple_repeat 1 100 0 6 710 541 243 9 0 chr6 16463667 16463774 -133053263 - B1_Mur2 SINE Alu -21 128 21 6 710 588 199 43 93 chr6 16463930 16463969 -133053068 + Lx9 LINE L1 7144 7175 -469 6 710 1122 254 90 11 chr6 16463969 16464323 -133052714 - ORR1C2 LTR MaLR -2 382 1 6 710 588 199 43 93 chr6 16464323 16464444 -133052593 + Lx9 LINE L1 7176 7296 -348 6 710 232 214 106 45 chr6 16464817 16464949 -133052088 - L1MA9 LINE L1 -130 6182 6043 6 710 1073 211 128 29 chr6 16464956 16465062 -133051975 - ORR1D-int LTR MaLR -686 684 567 6 710 324 0 0 0 chr6 16465062 16465098 -133051939 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 710 1073 211 128 29 chr6 16465098 16465304 -133051733 - ORR1D-int LTR MaLR -804 566 343 6 710 32321 93 6 6 chr6 16465309 16470669 -133046368 + L1Md_F2 LINE L1 214 5574 -309 6 710 3836 55 0 2 chr6 16470669 16471146 -133045891 + L1Md_F2 LINE L1 6104 6579 -3 6 710 2436 70 3 23 chr6 16471193 16471542 -133045495 + MTA_Mm LTR MaLR 1 342 -54 6 710 944 217 88 5 chr6 16471581 16471785 -133045252 - ORR1D-int LTR MaLR -1034 336 116 6 710 367 340 51 8 chr6 16471977 16472214 -133044823 + L1ME1 LINE L1 5854 6100 -79 6 710 225 0 0 0 chr6 16472702 16472727 -133044310 + (A)n Simple_repeat Simple_repeat 1 25 0 6 710 23 0 0 0 chr6 16473029 16473052 -133043985 + AT_rich Low_complexity Low_complexity 1 23 0 6 710 295 368 83 0 chr6 16473575 16473719 -133043318 - RSINE1 SINE B4 -2 163 8 6 710 210 321 26 86 chr6 16473743 16473859 -133043178 - PB1D10 SINE Alu 0 117 9 6 710 434 370 46 14 chr6 16474439 16474658 -133042379 + LTR40a LTR ERVL 47 272 -247 6 710 3279 175 156 67 chr6 16475548 16476338 -133040699 - RMER13A LTR ERVK 0 860 1 6 710 252 59 0 0 chr6 16476431 16476465 -133040572 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 710 282 347 59 39 chr6 16476553 16476629 -133040408 + B4A SINE B4 9 84 -208 6 710 348 24 0 0 chr6 16476629 16476670 -133040367 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 710 282 347 59 39 chr6 16476670 16476746 -133040291 + B4A SINE B4 85 163 -129 6 710 219 302 34 34 chr6 16476689 16476778 -133040259 + PB1D10 SINE Alu 20 108 -9 6 710 225 238 0 0 chr6 16476898 16476978 -133040059 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 710 503 31 15 0 chr6 16477012 16477077 -133039960 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 710 459 0 0 0 chr6 16478883 16478934 -133038103 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 710 861 243 27 0 chr6 16479151 16479373 -133037664 + Lx9 LINE L1 7234 7461 -183 6 710 273 109 0 0 chr6 16479380 16479426 -133037611 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 710 392 224 15 53 chr6 16479426 16479558 -133037479 + Lx9 LINE L1 7517 7643 -1 6 710 369 216 68 0 chr6 16479841 16479915 -133037122 - ID4_ SINE ID -1 82 4 6 710 446 382 12 0 chr6 16480175 16480340 -133036697 - MER45A DNA Tip100 -1 177 11 6 710 469 316 31 16 chr6 16482064 16482257 -133034780 - B3A SINE B2 0 198 3 6 710 22 35 0 0 chr6 16482822 16482851 -133034186 + AT_rich Low_complexity Low_complexity 1 29 0 6 710 211 314 132 38 chr6 16483929 16484035 -133033002 + PB1D10 SINE Alu 1 116 -1 6 710 201 121 0 0 chr6 16484039 16484072 -133032965 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 6 710 211 297 0 45 chr6 16484073 16484084 -133032953 + B4 SINE B4 81 140 -148 6 710 220 289 0 0 chr6 16484084 16484136 -133032901 + B1F2 SINE Alu 6 57 -92 6 710 573 158 0 0 chr6 16484142 16484243 -133032794 + (CAGAGA)n Simple_repeat Simple_repeat 1 101 0 6 710 412 260 42 0 chr6 16484273 16484369 -133032668 + B1F1 SINE Alu 42 141 -8 6 710 2327 212 47 21 chr6 16484449 16484978 -133032059 - Lx2B LINE L1 0 7000 6458 6 710 525 32 0 0 chr6 16488004 16488067 -133028970 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 710 23 78 0 0 chr6 16488223 16488274 -133028763 + AT_rich Low_complexity Low_complexity 1 51 0 6 710 306 0 0 0 chr6 16489320 16489354 -133027683 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 710 216 97 0 0 chr6 16490309 16490340 -133026697 + (TA)n Simple_repeat Simple_repeat 2 32 0 6 710 347 145 0 14 chr6 16491083 16491153 -133025884 + (CCCTAA)n Simple_repeat Simple_repeat 4 72 0 6 710 5392 35 0 0 chr6 16491273 16491909 -133025128 - L1Md_T LINE L1 0 6582 5947 6 710 541 38 12 12 chr6 16492496 16492577 -133024460 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 710 422 18 0 18 chr6 16492838 16492894 -133024143 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 710 180 0 0 0 chr6 16492894 16492913 -133024124 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 710 1004 329 54 42 chr6 16492923 16492965 -133024072 - Lx9 LINE L1 -145 7499 7459 6 710 1031 101 0 12 chr6 16492965 16493125 -133023912 + (TAGA)n Simple_repeat Simple_repeat 3 160 0 6 710 1004 329 54 42 chr6 16493125 16493433 -133023604 - Lx9 LINE L1 -186 7458 7137 6 710 1308 99 21 16 chr6 16493433 16493627 -133023410 - B2_Mm2 SINE B2 0 195 1 6 710 1004 329 54 42 chr6 16493627 16493983 -133023054 - Lx9 LINE L1 -508 7136 6785 6 710 502 321 0 0 chr6 16494015 16494152 -133022885 - Lx9 LINE L1 -1098 6546 6410 6 710 504 0 0 0 chr6 16494178 16494234 -133022803 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 710 188 190 25 25 chr6 16495220 16495301 -133021736 + CT-rich Low_complexity Low_complexity 4 84 0 6 710 297 73 0 0 chr6 16496106 16496147 -133020890 - L1Md_F3 LINE L1 -769 5815 5775 6 710 727 35 104 9 chr6 16496147 16496262 -133020775 + L1Md_F3 LINE L1 6459 6584 0 6 710 974 263 40 11 chr6 16496754 16497031 -133020006 + B4A SINE B4 8 292 0 6 710 180 216 0 0 chr6 16497031 16497082 -133019955 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 710 21 57 0 0 chr6 16498606 16498641 -133018396 + AT_rich Low_complexity Low_complexity 1 35 0 6 710 288 0 0 0 chr6 16499325 16499357 -133017680 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 710 22 0 0 0 chr6 16501669 16501691 -133015346 + AT_rich Low_complexity Low_complexity 1 22 0 1 710 1305 83 0 0 chr6 16502979 16503159 -133013878 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 710 359 193 12 0 chr6 16503159 16503242 -133013795 + GA-rich Low_complexity Low_complexity 2 85 0 3 710 476 191 34 75 chr6 16505223 16505370 -133011667 + Lx4B LINE L1 6914 7054 -4 4 710 225 229 43 0 chr6 16505439 16505509 -133011528 - Lx9 LINE L1 -7 7637 7565 5 710 5078 20 2 2 chr6 16507389 16507976 -133009061 - L1Md_A LINE L1 0 6582 5996 6 710 186 189 0 0 chr6 16508935 16508972 -133008065 + GA-rich Low_complexity Low_complexity 1 37 0 7 710 927 152 124 28 chr6 16509639 16509856 -133007181 + Lx3_Mus LINE L1 6764 7001 -8 8 710 3811 91 43 3 chr6 16509930 16510535 -133006502 - Lx2 LINE L1 -724 6273 5645 9 710 4317 134 13 18 chr6 16510535 16511243 -133005794 + Lx2 LINE L1 6293 6996 -1 9 710 4813 180 39 36 chr6 16511770 16512039 -133004998 + L1_Mur3 LINE L1 1776 2054 -3826 1 710 198 0 0 0 chr6 16512039 16512061 -133004976 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 710 4813 180 39 36 chr6 16512061 16512182 -133004855 + L1_Mur3 LINE L1 2055 2190 -3690 1 710 1435 45 0 53 chr6 16512182 16512391 -133004646 - L1Md_F3 LINE L1 0 6584 6387 1 710 4813 180 39 36 chr6 16512391 16513211 -133003826 + L1_Mur3 LINE L1 2191 2993 -2887 1 710 342 0 0 0 chr6 16513211 16513249 -133003788 + (TAA)n Simple_repeat Simple_repeat 1 38 0 1 710 1091 123 0 0 chr6 16513254 16513400 -133003637 + B1_Mus2 SINE Alu 2 147 0 1 710 4539 189 41 39 chr6 16513400 16514598 -133002439 + L1_Mur3 LINE L1 2991 4066 -1814 1 710 579 15 0 0 chr6 16514598 16514666 -133002371 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 710 4539 169 43 25 chr6 16514666 16514707 -133002330 + L1_Mur3 LINE L1 4067 4117 -1763 1 710 960 130 77 0 chr6 16514707 16514876 -133002161 - Lx3B LINE L1 -5 6968 6787 1 710 4539 169 43 25 chr6 16514876 16514963 -133002074 + L1_Mur3 LINE L1 4118 4204 -1676 1 710 474 146 0 0 chr6 16514959 16515041 -133001996 - L1_Mur2 LINE L1 -741 5136 5055 1 88 7147 90 3 5 chr6 16515037 16516080 -133000957 + L1_Mus4 LINE L1 5589 6629 -7 1 711 3839 235 115 100 chr6 16516083 16517680 -132999357 + Lx7 LINE L1 6076 7696 0 2 711 241 281 16 0 chr6 16517715 16517779 -132999258 + ID4_ SINE ID 2 66 -17 2 711 243 331 0 14 chr6 16517826 16517973 -132999064 + GA-rich Low_complexity Low_complexity 2 146 0 2 711 21 0 0 0 chr6 16518032 16518053 -132998984 + AT_rich Low_complexity Low_complexity 1 21 0 2 711 3480 125 24 34 chr6 16519019 16519163 -132997874 - Lx3C LINE L1 -61 6915 6769 2 711 441 0 0 0 chr6 16519163 16519212 -132997825 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 711 3480 125 24 34 chr6 16519212 16519688 -132997349 - Lx3C LINE L1 -208 6768 6301 2 711 369 0 0 0 chr6 16520092 16520133 -132996904 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 711 353 362 31 0 chr6 16520647 16520810 -132996227 + MER58A DNA MER1_type 47 214 -10 2 711 282 95 0 0 chr6 16521634 16521676 -132995361 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 2 711 327 278 81 106 chr6 16523593 16523754 -132993283 + B4A SINE B4 16 172 -120 2 711 375 78 0 0 chr6 16523841 16523892 -132993145 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 711 698 289 26 5 chr6 16524007 16524202 -132992835 - B3 SINE B2 -17 199 1 3 711 222 118 0 0 chr6 16524239 16524273 -132992764 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 711 184 250 0 0 chr6 16525555 16525595 -132991442 + L2a LINE L2 3367 3406 -20 3 711 24 0 0 0 chr6 16526905 16526929 -132990108 + AT_rich Low_complexity Low_complexity 1 24 0 3 711 226 270 127 0 chr6 16528308 16528371 -132988666 + ID2 SINE ID 11 81 -2 3 711 1013 76 28 0 chr6 16528625 16528770 -132988267 - L1_Mus2 LINE L1 -1 6565 6417 3 711 4464 194 34 45 chr6 16528818 16529866 -132987171 + Lx5 LINE L1 6011 7047 -3 3 711 633 218 20 30 chr6 16530955 16531109 -132985928 - B1_Mur4 SINE Alu 0 150 1 3 711 461 157 15 15 chr6 16531444 16531580 -132985457 + CT-rich Low_complexity Low_complexity 2 137 0 3 711 204 40 0 0 chr6 16531582 16531607 -132985430 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 711 29229 101 17 1 chr6 16533064 16537480 -132979557 - L1_Mus1 LINE L1 0 6567 2087 4 711 189 0 0 0 chr6 16537480 16537501 -132979536 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 711 29229 123 75 1 chr6 16537501 16539058 -132977979 - L1_Mus1 LINE L1 -3797 2086 399 4 711 609 110 0 0 chr6 16539061 16539152 -132977885 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 4 711 1088 89 0 0 chr6 16539152 16539298 -132977739 - B1_Mus1 SINE Alu -1 147 2 4 711 713 219 16 47 chr6 16539627 16539836 -132977201 - B3 SINE B2 -9 186 3 4 711 295 319 96 0 chr6 16540009 16540103 -132976934 - RSINE1 SINE B4 -31 134 32 4 711 2083 207 37 15 chr6 16540346 16540808 -132976229 - Lx5 LINE L1 -4 7046 6575 4 711 257 319 58 0 chr6 16541065 16541134 -132975903 + ID4_ SINE ID 3 75 -8 4 711 420 345 20 7 chr6 16541211 16541357 -132975680 + RSINE1 SINE B4 9 156 -9 4 711 248 212 37 12 chr6 16541455 16541536 -132975501 + Helitron1Nb_Mam RC Helitron 1027 1109 -7 5 711 431 328 17 0 chr6 16542052 16542171 -132974866 + ID_B1 SINE B4 96 216 -8 5 711 199 360 164 35 chr6 16542236 16542668 -132974369 + L2a LINE L2 2939 3426 0 5 711 422 332 69 29 chr6 16543365 16543641 -132973396 - B4A SINE B4 -4 288 2 5 711 276 30 0 0 chr6 16543797 16543830 -132973207 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 5 711 231 36 0 0 chr6 16544040 16544068 -132972969 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 5 711 180 0 0 0 chr6 16544102 16544122 -132972915 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 5 711 802 213 0 0 chr6 16544142 16544292 -132972745 - B1_Mur4 SINE Alu 0 150 1 5 711 1182 41 53 0 chr6 16544324 16544495 -132972542 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 711 270 134 29 15 chr6 16544495 16544553 -132972484 + CT-rich Low_complexity Low_complexity 2 61 0 5 711 264 291 60 52 chr6 16544710 16544826 -132972211 - Tigger7 DNA MER2_type -2096 395 279 6 711 230 288 76 0 chr6 16544912 16544978 -132972059 + ID4 SINE ID 2 72 -11 6 711 456 19 0 0 chr6 16544978 16545031 -132972006 + (CATA)n Simple_repeat Simple_repeat 4 56 0 6 711 23 33 0 0 chr6 16545122 16545152 -132971885 + AT_rich Low_complexity Low_complexity 1 30 0 6 711 36083 31 1 0 chr6 16545515 16551951 -132965086 - L1Md_T LINE L1 0 6585 48 6 711 387 0 0 0 chr6 16551952 16551995 -132965042 + (ATTG)n Simple_repeat Simple_repeat 4 46 0 6 711 1091 76 0 7 chr6 16552084 16552230 -132964807 + B1_Mus2 SINE Alu 3 147 0 6 711 237 30 55 82 chr6 16552235 16552308 -132964729 + (CAA)n Simple_repeat Simple_repeat 2 72 0 6 711 232 307 121 17 chr6 16552312 16552428 -132964609 - Tigger7 DNA MER2_type -2360 131 4 6 711 2421 34 2 237 chr6 16552620 16553122 -132963915 - RLTR10 LTR ERVK -6 384 1 6 711 16042 26 4 1 chr6 16553122 16555064 -132961973 - RLTR10-int LTR ERVK -1 1986 41 6 711 2510 42 2 236 chr6 16555080 16555584 -132961453 - RLTR10 LTR ERVK -4 386 1 6 711 643 177 0 26 chr6 16559041 16559192 -132957845 + CT-rich Low_complexity Low_complexity 1 147 0 6 711 2880 50 0 0 chr6 16559235 16559592 -132957445 - L1_Mus1 LINE L1 -4 6563 6207 7 711 24 0 0 0 chr6 16559748 16559772 -132957265 + AT_rich Low_complexity Low_complexity 1 24 0 7 711 181 273 125 48 chr6 16561227 16561331 -132955706 + L2 LINE L2 2528 2639 -780 7 711 1051 50 29 7 chr6 16561518 16561658 -132955379 + B1_Mm SINE Alu 1 143 -4 7 711 498 33 0 0 chr6 16561673 16561733 -132955304 + (GAAAA)n Simple_repeat Simple_repeat 1 60 0 7 711 387 0 0 0 chr6 16562092 16562135 -132954902 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7 711 7733 56 7 18 chr6 16562497 16563540 -132953497 - L1_Mus2 LINE L1 0 6566 5536 7 711 309 89 0 0 chr6 16563982 16564027 -132953010 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 7 711 203 196 0 51 chr6 16564050 16564109 -132952928 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 7 711 617 325 29 38 chr6 16564119 16564461 -132952576 - Lx7 LINE L1 -280 7416 7078 7 711 441 0 0 0 chr6 16565336 16565385 -132951652 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 711 524 130 11 0 chr6 16565530 16565622 -132951415 + (GGGA)n Simple_repeat Simple_repeat 4 96 0 8 711 215 160 0 39 chr6 16566350 16566402 -132950635 + GA-rich Low_complexity Low_complexity 5 54 0 8 711 452 338 27 61 chr6 16566414 16566562 -132950475 + RSINE1 SINE B4 5 147 -18 8 711 21 57 0 0 chr6 16566723 16566758 -132950279 + AT_rich Low_complexity Low_complexity 1 35 0 8 711 4592 35 7 0 chr6 16566939 16567485 -132949552 - L1Md_T LINE L1 -1 6581 6032 8 711 21 71 0 0 chr6 16567835 16567877 -132949160 + AT_rich Low_complexity Low_complexity 1 42 0 8 711 2303 225 36 36 chr6 16567964 16568581 -132948456 - Lx9 LINE L1 0 7644 7028 8 711 811 83 15 15 chr6 16568627 16568762 -132948275 + L1_Mus3 LINE L1 6500 6634 -4 8 711 273 351 112 43 chr6 16569677 16569838 -132947199 + B4A SINE B4 35 206 -86 8 711 410 0 0 20 chr6 16569890 16569941 -132947096 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 711 704 100 0 8 chr6 16570238 16570359 -132946678 + (GA)n Simple_repeat Simple_repeat 2 121 0 9 711 348 0 0 55 chr6 16570451 16570506 -132946531 + (CAA)n Simple_repeat Simple_repeat 3 54 0 9 711 498 237 10 0 chr6 16570958 16571055 -132945982 - RSINE1 SINE B4 -60 105 8 9 711 234 0 0 0 chr6 16574232 16574258 -132942779 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 9 711 376 274 30 23 chr6 16574341 16574472 -132942565 - B1F SINE Alu -13 136 5 9 711 329 297 122 45 chr6 16574601 16574887 -132942150 + L1M5 LINE L1 4403 4710 -1436 9 711 336 270 70 70 chr6 16575548 16575735 -132941302 + Lx8 LINE L1 7223 7409 -64 9 711 1555 178 117 11 chr6 16575967 16576364 -132940673 + Lx5 LINE L1 6571 7052 -6 9 711 390 139 0 0 chr6 16576685 16576757 -132940280 + (GA)n Simple_repeat Simple_repeat 2 73 0 9 711 239 328 171 4 chr6 16576807 16577052 -132939985 + L1M5 LINE L1 5491 5776 -397 9 711 3832 121 4 99 chr6 16577127 16577350 -132939687 + L1_Mus1 LINE L1 5918 6135 -432 1 711 6418 103 40 70 chr6 16577350 16578414 -132938623 - RLTR13D4 LTR ERVK 0 1033 1 1 711 3832 121 4 99 chr6 16578414 16578908 -132938129 + L1_Mus1 LINE L1 6136 6567 0 1 711 3646 71 4 6 chr6 16578930 16579424 -132937613 + L1_Mus3 LINE L1 6141 6633 -5 1 711 321 336 0 94 chr6 16579489 16579617 -132937420 + PB1D10 SINE Alu 1 116 -1 1 711 224 95 71 0 chr6 16579621 16579663 -132937374 + GA-rich Low_complexity Low_complexity 4 48 0 1 711 1221 46 0 0 chr6 16579692 16579844 -132937193 + (GGGAA)n Simple_repeat Simple_repeat 5 156 0 1 711 729 0 0 0 chr6 16579846 16579927 -132937110 + (GAGAA)n Simple_repeat Simple_repeat 1 81 0 1 711 3513 132 7 11 chr6 16580034 16580587 -132936450 - Lx2 LINE L1 0 6997 6447 1 711 9224 124 8 8 chr6 16580877 16582287 -132934750 + Lx2 LINE L1 5588 6997 0 1 711 257 352 21 31 chr6 16583042 16583192 -132933845 + L2c LINE L2 3250 3426 0 1 711 333 0 0 0 chr6 16583593 16583630 -132933407 + (T)n Simple_repeat Simple_repeat 1 37 0 1 711 2933 84 0 0 chr6 16584078 16584482 -132932555 - L1_Mm LINE L1 -1501 4382 3979 1 711 1341 87 0 35 chr6 16584482 16584684 -132932353 + L1_Mus1 LINE L1 6373 6567 0 1 711 378 0 0 0 chr6 16584840 16584882 -132932155 + (TAAAA)n Simple_repeat Simple_repeat 5 46 0 1 711 375 23 0 0 chr6 16584977 16585021 -132932016 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 711 414 0 0 0 chr6 16585496 16585542 -132931495 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1 711 387 127 0 0 chr6 16585858 16585921 -132931116 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 711 214 186 0 0 chr6 16586512 16586555 -132930482 + A-rich Low_complexity Low_complexity 1 43 0 1 711 195 189 0 0 chr6 16586633 16586686 -132930351 + A-rich Low_complexity Low_complexity 1 53 0 1 711 309 159 0 0 chr6 16587136 16587199 -132929838 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 711 228 67 0 0 chr6 16587531 16587561 -132929476 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 711 195 129 0 0 chr6 16590142 16590173 -132926864 + (GAA)n Simple_repeat Simple_repeat 2 32 0 1 711 359 261 11 0 chr6 16595104 16595196 -132921841 + RSINE1 SINE B4 2 94 -71 1 711 2396 182 29 21 chr6 16595308 16595785 -132921252 - RLTR28B LTR ERVL 0 481 1 1 711 663 89 26 9 chr6 16595897 16596010 -132921027 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 1 711 22 0 0 0 chr6 16596362 16596384 -132920653 + AT_rich Low_complexity Low_complexity 1 22 0 1 711 216 200 0 0 chr6 16596619 16596664 -132920373 + T-rich Low_complexity Low_complexity 1 45 0 1 711 1147 74 0 0 chr6 16596667 16596815 -132920222 - B1_Mus1 SINE Alu 0 148 1 1 711 309 51 0 0 chr6 16596987 16597026 -132920011 + (A)n Simple_repeat Simple_repeat 1 39 0 1 711 251 230 31 117 chr6 16597780 16597908 -132919129 - RMER15 LTR ERVL -444 131 15 1 711 305 292 94 45 chr6 16597985 16598186 -132918851 + L1MA7 LINE L1 608 818 -5724 1 711 447 313 161 18 chr6 16598369 16598655 -132918382 + L1M4 LINE L1 4973 5299 -847 1 711 739 298 93 17 chr6 16598756 16599176 -132917861 + L1MA7 LINE L1 4923 5374 -1267 1 711 476 321 61 30 chr6 16599176 16599504 -132917533 + L1MA7 LINE L1 6119 6456 -333 1 711 19143 152 25 16 chr6 16600413 16601419 -132915618 + L1VL4 LINE L1 742 1719 -4167 1 711 1114 71 0 0 chr6 16601419 16601559 -132915478 + B1_Mus1 SINE Alu 3 142 -6 1 711 459 0 0 0 chr6 16601561 16601612 -132915425 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 711 19143 172 39 16 chr6 16601612 16604174 -132912863 + L1VL4 LINE L1 1720 4333 -1553 1 711 231 36 0 0 chr6 16604174 16604202 -132912835 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 1 711 19143 172 39 16 chr6 16604202 16604478 -132912559 + L1VL4 LINE L1 4334 4629 -1257 1 711 273 57 0 0 chr6 16604478 16604513 -132912524 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 711 19143 172 39 16 chr6 16604513 16605091 -132911946 + L1VL4 LINE L1 4630 5226 -660 1 711 3805 142 5 6 chr6 16605096 16605722 -132911315 + L1Md_F LINE L1 431 1055 -5464 1 711 15661 163 168 7 chr6 16605707 16610275 -132906762 + L1_Mus1 LINE L1 1203 6566 -1 1 711 4955 175 33 9 chr6 16610293 16611962 -132905075 + Lx2B LINE L1 5220 6969 -31 1 711 8138 28 0 0 chr6 16611962 16612907 -132904130 + L1Md_F2 LINE L1 5630 6574 -8 1 711 2995 143 0 19 chr6 16612907 16612941 -132904096 + Lx2B LINE L1 6970 6996 -4 1 711 183 171 40 0 chr6 16612975 16613051 -132903986 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 711 250 200 25 51 chr6 16613135 16613214 -132903823 + L1MB8 LINE L1 5869 5945 -233 1 711 1727 242 39 5 chr6 16613638 16614025 -132903012 - MTC LTR MaLR 0 421 22 1 711 311 353 96 0 chr6 16614313 16614449 -132902588 + MIR SINE MIR 23 171 -91 1 711 918 164 136 15 chr6 16614874 16615072 -132901965 + URR1A DNA MER1_type 5 226 0 1 711 1602 230 56 16 chr6 16615220 16615648 -132901389 + Lx7 LINE L1 6970 7414 -282 1 711 290 148 62 0 chr6 16615650 16615731 -132901306 + CT-rich Low_complexity Low_complexity 4 89 0 1 711 198 0 0 0 chr6 16615749 16615771 -132901266 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 711 611 13 13 0 chr6 16615843 16615919 -132901118 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 711 1139 305 83 14 chr6 16616316 16616751 -132900286 + Tigger7 DNA MER2_type 1 465 -2026 1 711 286 221 86 34 chr6 16616762 16616879 -132900158 + Tigger7 DNA MER2_type 2250 2371 -120 1 711 387 0 0 0 chr6 16618348 16618391 -132898646 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1 711 636 14 0 0 chr6 16618939 16619012 -132898025 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 711 25 75 0 0 chr6 16620256 16620309 -132896728 + AT_rich Low_complexity Low_complexity 1 53 0 1 711 715 326 74 39 chr6 16620435 16620799 -132896238 - MTEa LTR MaLR 0 379 3 1 711 2404 205 92 40 chr6 16621056 16621707 -132895330 - RMER6C LTR ERVK -5 685 1 1 711 1116 78 0 0 chr6 16622502 16622773 -132894264 + (GA)n Simple_repeat Simple_repeat 1 271 0 1 711 2270 238 27 89 chr6 16623209 16623975 -132893062 + Lx7 LINE L1 6962 7680 -16 1 711 864 28 0 0 chr6 16625958 16626066 -132890971 + B1_Mm SINE Alu 40 147 0 1 711 21 0 0 0 chr6 16626308 16626329 -132890708 + AT_rich Low_complexity Low_complexity 1 21 0 1 711 207 0 0 0 chr6 16626903 16626926 -132890111 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 1 711 24 0 0 0 chr6 16627351 16627375 -132889662 + AT_rich Low_complexity Low_complexity 1 24 0 1 711 4767 80 1 11 chr6 16628452 16629109 -132887928 - L1Md_F2 LINE L1 -2 6580 5930 1 711 4008 58 4 6 chr6 16629277 16629794 -132887243 + L1_Mus4 LINE L1 6115 6630 -6 1 711 569 284 8 9 chr6 16629972 16630122 -132886915 - ID_B1 SINE B4 -74 218 70 1 711 2321 68 40 9 chr6 16630708 16631033 -132886004 + L1Md_F2 LINE L1 6248 6582 0 1 711 409 245 32 0 chr6 16631397 16631491 -132885546 - B1_Mur3 SINE Alu -50 99 3 1 711 296 211 86 4 chr6 16631959 16632061 -132884976 - L1MA6 LINE L1 -51 6249 6134 1 711 23 0 0 0 chr6 16632301 16632324 -132884713 + AT_rich Low_complexity Low_complexity 1 23 0 1 711 184 398 83 9 chr6 16633030 16633258 -132883779 - L4 LINE RTE -112 1917 1673 1 711 629 314 62 65 chr6 16633381 16633671 -132883366 - B4 SINE B4 0 292 4 1 711 584 293 75 33 chr6 16633788 16634000 -132883037 + MER82 DNA MER2_type 169 389 -264 1 711 650 125 9 0 chr6 16636894 16637006 -132880031 + (TCC)n Simple_repeat Simple_repeat 3 115 0 1 711 267 327 9 18 chr6 16637030 16637142 -132879895 - PB1D9 SINE Alu -9 111 1 1 711 498 17 0 0 chr6 16638622 16638681 -132878356 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 711 461 206 21 28 chr6 16638855 16639000 -132878037 + Lx9 LINE L1 7499 7642 -2 1 711 216 0 0 0 chr6 16640253 16640277 -132876760 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1 711 180 0 0 0 chr6 16640277 16640296 -132876741 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 711 363 349 72 0 chr6 16640300 16640452 -132876585 - RSINE1 SINE B4 -2 163 1 1 711 333 100 0 0 chr6 16641272 16641322 -132875715 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 711 251 242 30 15 chr6 16641401 16641468 -132875569 - B4 SINE B4 -215 77 10 1 711 29 47 0 0 chr6 16641516 16641559 -132875478 + AT_rich Low_complexity Low_complexity 1 43 0 1 711 854 182 0 13 chr6 16641601 16641751 -132875286 + B1_Mur4 SINE Alu 2 149 -1 1 711 703 245 53 0 chr6 16641788 16641939 -132875098 - B3 SINE B2 -48 168 10 1 711 214 65 62 42 chr6 16642431 16642479 -132874558 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 1 711 1190 48 0 13 chr6 16642479 16642628 -132874409 - B1_Mus1 SINE Alu 0 148 2 1 711 21 71 0 0 chr6 16643420 16643462 -132873575 + AT_rich Low_complexity Low_complexity 1 42 0 1 711 591 286 29 33 chr6 16643769 16643983 -132873054 - B3A SINE B2 -6 210 3 1 711 408 55 0 0 chr6 16644356 16644411 -132872626 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 711 2378 145 2 46 chr6 16644735 16645147 -132871890 - MTC LTR MaLR 0 421 28 1 711 212 192 54 71 chr6 16645309 16645365 -132871672 - L4 LINE RTE -1509 520 466 1 712 423 0 0 0 chr6 16646327 16646374 -132870663 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 712 509 0 16 0 chr6 16646600 16646661 -132870376 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 712 2208 295 66 32 chr6 16647948 16648085 -132868952 - RCHARR1 DNA MER1_type 0 974 824 1 712 1012 264 86 0 chr6 16648085 16648354 -132868683 + B4 SINE B4 1 292 0 1 712 2208 295 66 32 chr6 16648354 16649125 -132867912 - RCHARR1 DNA MER1_type -151 823 35 1 712 252 0 0 0 chr6 16649811 16649839 -132867198 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 712 540 45 0 0 chr6 16649839 16649905 -132867132 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 712 2726 230 65 7 chr6 16649930 16650610 -132866427 + Lx9 LINE L1 6918 7636 -8 1 712 24 0 0 0 chr6 16653756 16653780 -132863257 + AT_rich Low_complexity Low_complexity 1 24 0 1 712 253 312 70 20 chr6 16654040 16654142 -132862895 + MIRc SINE MIR 85 186 -82 1 712 751 244 20 49 chr6 16654292 16654495 -132862542 + B3A SINE B2 2 198 0 2 712 207 88 0 0 chr6 16654850 16654884 -132862153 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2 712 305 100 0 20 chr6 16655098 16655149 -132861888 + (TAA)n Simple_repeat Simple_repeat 3 52 0 2 712 910 253 170 34 chr6 16655609 16656104 -132860933 - L1MA8 LINE L1 -53 6238 5677 2 712 4029 176 50 29 chr6 16656106 16656955 -132860082 + RMER13B LTR ERVK 1 931 -27 2 712 447 259 101 0 chr6 16656956 16657095 -132859942 - L1MA8 LINE L1 -622 5669 5517 2 712 284 338 33 60 chr6 16657413 16657445 -132859592 + ID SINE ID 53 80 -144 2 712 519 288 16 0 chr6 16657445 16657570 -132859467 + B1_Mur2 SINE Alu 1 127 -22 2 712 225 94 0 0 chr6 16657686 16657718 -132859319 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 712 329 331 95 0 chr6 16657763 16657911 -132859126 + L1M2 LINE L1 5479 5640 -651 2 712 452 266 9 9 chr6 16658580 16658694 -132858343 - RSINE1 SINE B4 -41 124 11 2 712 279 0 0 0 chr6 16658930 16658961 -132858076 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 712 455 331 0 30 chr6 16659975 16660109 -132856928 + B3A SINE B2 2 131 -67 2 712 255 308 147 46 chr6 16661041 16661150 -132855887 + MER5A1 DNA MER1_type 43 162 -4 2 712 185 367 0 0 chr6 16661389 16661438 -132855599 - MER5B DNA MER1_type -39 139 91 2 712 1514 193 120 54 chr6 16661654 16662005 -132855032 - ORR1B1 LTR MaLR 0 394 21 2 712 761 296 39 0 chr6 16663194 16663397 -132853640 - B3 SINE B2 -4 212 2 2 712 790 295 11 18 chr6 16663497 16663773 -132853264 + B4A SINE B4 1 274 -18 2 712 474 18 0 0 chr6 16663810 16663865 -132853172 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 712 234 62 0 0 chr6 16663865 16663897 -132853140 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 712 24 32 0 0 chr6 16663954 16663985 -132853052 + AT_rich Low_complexity Low_complexity 1 31 0 2 712 6142 78 17 1 chr6 16664269 16665107 -132851930 + L1_Mus3 LINE L1 5784 6634 -4 2 712 455 33 0 16 chr6 16665903 16665965 -132851072 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 712 392 312 38 23 chr6 16666083 16666214 -132850823 + RSINE1 SINE B4 4 136 -29 2 712 219 125 0 0 chr6 16666230 16666270 -132850767 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 712 379 321 0 190 chr6 16667277 16667477 -132849560 + RSINE1 SINE B4 3 164 -1 2 712 746 296 52 95 chr6 16667806 16668206 -132848831 + MLT1B LTR MaLR 1 383 -7 2 712 585 42 0 0 chr6 16668209 16668281 -132848756 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 712 213 205 0 0 chr6 16670005 16670044 -132846993 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 712 459 309 65 0 chr6 16670955 16671094 -132845943 - MLT1A0 LTR MaLR 0 365 218 2 712 279 250 11 97 chr6 16671165 16671258 -132845779 - MLT1A0 LTR MaLR -280 85 1 2 712 847 322 51 22 chr6 16671771 16672085 -132844952 + MTD LTR MaLR 12 334 -85 2 712 194 345 0 0 chr6 16672599 16672654 -132844383 + MER5B DNA MER1_type 104 158 -20 2 712 297 100 0 0 chr6 16673790 16673840 -132843197 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 2 712 715 178 7 14 chr6 16675696 16675844 -132841193 + B1_Mus1 SINE Alu 1 147 -1 2 712 261 119 0 0 chr6 16678161 16678203 -132838834 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 712 23 0 0 0 chr6 16678285 16678308 -132838729 + AT_rich Low_complexity Low_complexity 1 23 0 2 712 459 0 0 0 chr6 16680198 16680249 -132836788 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 2 712 21 0 0 0 chr6 16680362 16680383 -132836654 + AT_rich Low_complexity Low_complexity 1 21 0 2 712 302 0 0 26 chr6 16680430 16680469 -132836568 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2 712 1020 164 0 0 chr6 16680469 16680628 -132836409 - B2_Mm2 SINE B2 -34 161 3 2 712 485 279 110 46 chr6 16682216 16682479 -132834558 + MER92B LTR ERV1 182 461 -175 2 712 1786 212 58 29 chr6 16683899 16684299 -132832738 - RLTR20A LTR ERVK -112 429 17 2 712 2689 68 143 139 chr6 16684299 16684809 -132832228 + RLTR1B LTR ERV1 1 512 0 2 712 1786 212 58 29 chr6 16684809 16684821 -132832216 - RLTR20A LTR ERVK -525 16 5 2 712 39 0 0 0 chr6 16684986 16685025 -132832012 + AT_rich Low_complexity Low_complexity 1 39 0 2 712 552 315 111 25 chr6 16685105 16685349 -132831688 - LTR40a LTR ERVL -7 512 248 2 712 349 95 32 0 chr6 16685956 16686019 -132831018 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2 712 339 44 0 0 chr6 16690978 16691023 -132826014 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 712 23 54 0 0 chr6 16691617 16691654 -132825383 + AT_rich Low_complexity Low_complexity 1 37 0 2 712 213 39 0 0 chr6 16692339 16692365 -132824672 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 712 940 293 106 0 chr6 16692738 16693011 -132824026 - MTD LTR MaLR -14 405 104 2 712 184 309 142 35 chr6 16693011 16693152 -132823885 - L2 LINE L2 -1357 2062 1907 2 712 1193 61 7 0 chr6 16694939 16695086 -132821951 + B1_Mus1 SINE Alu 1 148 0 2 712 219 103 0 0 chr6 16695094 16695133 -132821904 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 712 310 165 0 81 chr6 16695637 16695736 -132821301 + Lx4B LINE L1 6964 7054 -4 2 712 785 107 0 8 chr6 16695756 16695879 -132821158 + (GA)n Simple_repeat Simple_repeat 1 122 0 2 712 210 159 22 43 chr6 16696230 16696276 -132820761 - MIRm SINE MIR -195 81 37 2 712 333 0 0 0 chr6 16696806 16696843 -132820194 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 712 4296 133 22 32 chr6 16697911 16698628 -132818409 - Lx2 LINE L1 -1 6996 6287 2 712 1129 341 58 10 chr6 16698652 16699138 -132817899 - Lx8 LINE L1 -134 7339 6831 2 712 291 140 0 0 chr6 16700207 16700257 -132816780 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 712 488 287 64 23 chr6 16700677 16700848 -132816189 + MLT1A1 LTR MaLR 1 178 -230 2 712 6346 157 30 11 chr6 16700870 16702215 -132814822 + Lx3_Mus LINE L1 5587 6976 -24 2 712 250 250 125 0 chr6 16703312 16703384 -132813653 - MIRb SINE MIR 0 268 188 2 712 186 250 61 30 chr6 16703555 16703621 -132813416 + MIRb SINE MIR 63 130 -138 2 712 2495 64 17 17 chr6 16704432 16704784 -132812253 - L1_Mus3 LINE L1 -8 6630 6279 2 712 406 107 284 118 chr6 16705059 16705076 -132811961 - B2_Mm2 SINE B2 -1 194 178 2 712 384 45 14 29 chr6 16705076 16705145 -132811892 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 2 712 406 107 284 118 chr6 16705145 16705254 -132811783 - B2_Mm2 SINE B2 -18 177 47 2 712 1194 103 11 6 chr6 16705290 16705466 -132811571 - B2_Mm1a SINE B2 -15 178 2 2 712 235 324 0 0 chr6 16707192 16707260 -132809777 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 712 720 291 35 39 chr6 16707331 16707560 -132809477 - B4 SINE B4 -63 229 2 2 712 21 0 0 0 chr6 16709036 16709057 -132807980 + AT_rich Low_complexity Low_complexity 1 21 0 2 712 270 269 20 51 chr6 16709557 16709655 -132807382 - RLTR14 LTR ERV1 -21 361 267 2 712 258 32 0 0 chr6 16710328 16710359 -132806678 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 2 712 387 281 14 21 chr6 16710615 16710757 -132806280 + GA-rich Low_complexity Low_complexity 1 141 0 2 712 224 243 14 0 chr6 16711126 16711196 -132805841 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 712 261 146 0 0 chr6 16711231 16711279 -132805758 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 712 2488 200 30 18 chr6 16712427 16713163 -132803874 - Lx6 LINE L1 -1348 6112 5364 2 712 3116 272 76 25 chr6 16713176 16714197 -132802840 + Lx6 LINE L1 6169 7460 0 2 712 984 25 0 0 chr6 16714292 16714411 -132802626 + RLTR13A LTR ERVK 635 753 -102 2 712 264 347 56 0 chr6 16716556 16716700 -132800337 - Kanga2_a DNA Tc2 -623 265 114 2 712 4582 235 76 47 chr6 16717125 16718272 -132798765 - Lx6 LINE L1 -241 7455 6029 2 712 339 96 0 0 chr6 16718272 16718324 -132798713 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 2 712 4582 239 71 49 chr6 16718324 16718446 -132798591 - Lx6 LINE L1 -1432 6028 5897 2 712 23 0 0 0 chr6 16718675 16718698 -132798339 + AT_rich Low_complexity Low_complexity 1 23 0 2 712 223 386 96 7 chr6 16719880 16720026 -132797011 + MIR SINE MIR 15 173 -89 2 712 305 60 0 0 chr6 16720128 16720178 -132796859 - L1_Mus4 LINE L1 -6 6630 6581 2 712 255 254 28 0 chr6 16720841 16720912 -132796125 + CT-rich Low_complexity Low_complexity 3 75 0 2 712 214 250 0 0 chr6 16721728 16721780 -132795257 + GA-rich Low_complexity Low_complexity 2 53 0 2 712 1881 107 7 0 chr6 16722417 16722687 -132794350 - L1_Mus3 LINE L1 -1 6637 6366 2 712 1654 76 0 0 chr6 16722687 16722897 -132794140 + L1_Mus3 LINE L1 6153 6362 -276 2 712 369 0 0 0 chr6 16723172 16723213 -132793824 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 712 568 311 79 43 chr6 16723275 16723695 -132793342 - L1MA5A LINE L1 -282 6018 5584 2 712 204 184 0 62 chr6 16723714 16723795 -132793242 + CT-rich Low_complexity Low_complexity 2 77 0 2 712 1937 280 62 27 chr6 16723799 16724616 -132792421 - Lx5 LINE L1 -8 7042 6455 2 712 568 212 38 13 chr6 16724676 16724834 -132792203 - Lx9 LINE L1 -8 7636 7475 2 712 482 193 47 94 chr6 16724864 16725013 -132792024 + Lx9 LINE L1 6919 7060 -584 2 712 816 210 161 38 chr6 16725026 16725293 -132791744 + Lx9 LINE L1 7123 7422 -222 2 712 462 258 68 25 chr6 16725291 16725531 -132791506 - L1MA5A LINE L1 -383 5497 5278 2 712 408 274 23 31 chr6 16725535 16725663 -132791374 - ID_B1 SINE B4 -2 222 96 2 712 423 333 59 102 chr6 16725669 16725923 -132791114 + MTE2b LTR MaLR 4 246 -133 2 712 611 316 144 0 chr6 16725938 16726277 -132790760 - L1MA5A LINE L1 -996 5147 4760 2 712 498 33 0 0 chr6 16729394 16729454 -132787583 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 2 712 213 39 0 0 chr6 16729455 16729481 -132787556 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 712 660 103 0 0 chr6 16729481 16729588 -132787449 + (GA)n Simple_repeat Simple_repeat 2 108 0 2 712 27 49 0 0 chr6 16731169 16731210 -132785827 + AT_rich Low_complexity Low_complexity 1 41 0 2 712 21 57 0 0 chr6 16731632 16731667 -132785370 + AT_rich Low_complexity Low_complexity 1 35 0 2 712 405 0 0 0 chr6 16732665 16732710 -132784327 + (CATA)n Simple_repeat Simple_repeat 2 46 0 3 712 1532 157 37 37 chr6 16733216 16733514 -132783523 - Lx2 LINE L1 -2 6995 6698 3 712 2291 129 16 35 chr6 16733736 16734112 -132782925 + Lx2 LINE L1 6628 6996 -1 3 712 1502 272 33 23 chr6 16734316 16734715 -132782322 - MTD LTR MaLR -3 416 14 3 712 1188 275 135 82 chr6 16734726 16735605 -132781432 - MTD-int LTR MaLR 0 1258 333 3 712 586 0 27 0 chr6 16735619 16735693 -132781344 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 3 712 823 188 14 0 chr6 16735714 16735858 -132781179 - B1_Mus1 SINE Alu 0 148 3 3 712 422 238 25 93 chr6 16735717 16735879 -132781158 - B4A SINE B4 -68 224 74 3 712 23 33 0 0 chr6 16736604 16736634 -132780403 + AT_rich Low_complexity Low_complexity 1 30 0 3 712 31 68 0 0 chr6 16737281 16737340 -132779697 + AT_rich Low_complexity Low_complexity 1 59 0 3 712 429 234 0 0 chr6 16737432 16737539 -132779498 - L1MB8 LINE L1 -3 6175 6069 3 712 377 297 117 10 chr6 16737544 16737817 -132779220 - L1M4b LINE L1 -3071 3935 3630 3 712 355 281 62 86 chr6 16737928 16738414 -132778623 - L1M4b LINE L1 -3552 3454 2981 3 712 406 294 65 72 chr6 16738669 16738770 -132778267 - L1M4b LINE L1 -4397 2937 2838 3 712 3096 56 2 37 chr6 16738770 16739180 -132777857 + MTA_Mm LTR MaLR 1 396 0 3 712 406 294 65 72 chr6 16739180 16739371 -132777666 - L1M4b LINE L1 -4497 2837 2647 3 712 23 54 0 0 chr6 16739413 16739450 -132777587 + AT_rich Low_complexity Low_complexity 1 37 0 3 712 361 323 80 8 chr6 16741313 16741438 -132775599 - RSINE1 SINE B4 -29 136 3 3 712 745 257 62 11 chr6 16741638 16741815 -132775222 - B3 SINE B2 -30 186 1 3 712 217 174 14 68 chr6 16741821 16741895 -132775142 + T-rich Low_complexity Low_complexity 2 71 0 3 712 522 283 6 101 chr6 16742082 16742251 -132774786 + B3A SINE B2 36 188 -10 3 712 247 357 74 40 chr6 16742397 16742546 -132774491 + MIRb SINE MIR 5 158 -110 3 712 515 290 63 68 chr6 16742881 16743048 -132773989 + B4A SINE B4 2 169 -123 3 712 1249 161 9 9 chr6 16743048 16743274 -132773763 + URR1A DNA MER1_type 1 226 0 3 712 515 290 63 68 chr6 16743274 16743313 -132773724 + B4A SINE B4 170 207 -85 3 712 24 53 0 0 chr6 16743503 16743541 -132773496 + AT_rich Low_complexity Low_complexity 1 38 0 3 712 189 0 0 0 chr6 16745874 16745895 -132771142 + (T)n Simple_repeat Simple_repeat 1 21 0 3 712 387 0 0 0 chr6 16748204 16748247 -132768790 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 712 459 0 0 0 chr6 16748247 16748297 -132768740 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 712 180 0 0 0 chr6 16749287 16749307 -132767730 + (CACAG)n Simple_repeat Simple_repeat 3 22 0 3 712 545 305 67 17 chr6 16749549 16749729 -132767308 + B4A SINE B4 14 202 -90 3 712 378 0 0 0 chr6 16749811 16749853 -132767184 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 712 516 175 0 0 chr6 16750437 16750540 -132766497 + L1_Mus3 LINE L1 6533 6635 -3 3 712 709 271 179 28 chr6 16750768 16751132 -132765905 - MTD LTR MaLR 0 419 1 3 712 638 236 166 34 chr6 16751269 16751655 -132765382 - Lx7 LINE L1 0 7696 7260 3 712 4922 140 60 5 chr6 16751679 16752539 -132764498 - Lx4A LINE L1 0 7058 6151 3 712 3344 194 91 28 chr6 16752539 16753429 -132763608 + L1_Mus2 LINE L1 5620 6565 -1 3 712 503 165 17 0 chr6 16753452 16753567 -132763470 + Lx4A LINE L1 5998 6114 -944 3 712 255 196 0 38 chr6 16753565 16753618 -132763419 - Lx7 LINE L1 -423 7273 7223 3 712 495 0 0 0 chr6 16753716 16753771 -132763266 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 712 276 297 0 105 chr6 16753940 16754064 -132762973 - L2c LINE L2 0 3387 3277 3 712 237 284 87 19 chr6 16754155 16754259 -132762778 - MIR SINE MIR -102 160 50 3 712 183 42 0 0 chr6 16755854 16755878 -132761159 + (CATA)n Simple_repeat Simple_repeat 3 26 0 3 712 459 63 0 0 chr6 16755878 16755941 -132761096 + (TGAA)n Simple_repeat Simple_repeat 2 64 0 3 712 279 0 0 0 chr6 16756786 16756817 -132760220 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 712 29 0 0 0 chr6 16757296 16757325 -132759712 + AT_rich Low_complexity Low_complexity 1 29 0 3 712 237 194 283 10 chr6 16757345 16757444 -132759593 - Lx2B LINE L1 -86 6914 6789 3 712 306 148 0 0 chr6 16757681 16757735 -132759302 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 3 712 2122 211 37 29 chr6 16757819 16758301 -132758736 - Lx6 LINE L1 -8 7452 6967 3 712 21 0 0 0 chr6 16761422 16761443 -132755594 + AT_rich Low_complexity Low_complexity 1 21 0 3 712 371 107 0 13 chr6 16761849 16761925 -132755112 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 3 712 261 152 43 0 chr6 16761925 16761971 -132755066 + T-rich Low_complexity Low_complexity 5 52 0 3 712 485 320 101 49 chr6 16762275 16762561 -132754476 - MTEa LTR MaLR -14 365 65 3 712 253 283 83 42 chr6 16762586 16762601 -132754436 - ID_B1 SINE B4 -31 193 94 3 712 279 241 123 25 chr6 16762601 16762682 -132754355 - PB1D10 SINE Alu -16 101 13 3 712 180 217 0 0 chr6 16762697 16762743 -132754294 + CT-rich Low_complexity Low_complexity 3 48 0 3 712 2537 208 50 18 chr6 16762829 16763372 -132753665 - RLTR20B2 LTR ERVK 0 560 1 3 712 685 50 10 19 chr6 16764441 16764544 -132752493 + (GAAAA)n Simple_repeat Simple_repeat 3 104 0 3 712 351 0 0 0 chr6 16764663 16764702 -132752335 + (TATAA)n Simple_repeat Simple_repeat 3 41 0 3 712 360 148 0 0 chr6 16764949 16765010 -132752027 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 712 211 211 231 0 chr6 16765014 16765066 -132751971 - PB1D10 SINE Alu -34 83 20 3 712 788 230 44 56 chr6 16765499 16765748 -132751289 - L1_Rod LINE L1 -291 5556 5311 3 712 954 193 39 19 chr6 16765757 16765963 -132751074 - URR1A DNA MER1_type -16 210 1 3 712 224 0 0 61 chr6 16766030 16766063 -132750974 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 712 1811 239 21 27 chr6 16766067 16766172 -132750865 - L1_Rod LINE L1 -623 5224 5113 3 712 207 0 0 0 chr6 16766172 16766195 -132750842 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 712 1811 239 21 27 chr6 16766195 16766649 -132750388 - L1_Rod LINE L1 -735 5112 4669 3 712 3454 249 53 16 chr6 16766636 16767628 -132749409 + Lx9 LINE L1 6610 7638 -6 3 712 1496 333 105 18 chr6 16768977 16769748 -132747289 + Lx8 LINE L1 6542 7379 -94 3 712 245 222 13 77 chr6 16770004 16770082 -132746955 - MLT1A1 LTR MaLR -311 97 25 3 712 855 192 0 0 chr6 16770369 16770546 -132746491 + CT-rich Low_complexity Low_complexity 1 177 0 3 712 396 0 0 0 chr6 16770583 16770627 -132746410 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 712 357 366 54 43 chr6 16770628 16770905 -132746132 - B4 SINE B4 -12 280 1 3 712 55 40 0 0 chr6 16771216 16771292 -132745745 + AT_rich Low_complexity Low_complexity 1 76 0 3 712 604 326 91 25 chr6 16772320 16772374 -132744663 + MLT1A0 LTR MaLR 71 140 -225 3 712 1041 42 14 7 chr6 16772374 16772518 -132744519 + (CA)n Simple_repeat Simple_repeat 2 146 0 3 712 604 326 91 25 chr6 16772518 16772737 -132744300 + MLT1A0 LTR MaLR 141 362 -3 3 712 222 62 0 0 chr6 16772891 16772923 -132744114 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 712 242 147 0 0 chr6 16772923 16772957 -132744080 - B1_Mus2 SINE Alu -113 34 1 3 712 368 289 64 32 chr6 16773235 16773392 -132743645 - MLT1E2 LTR MaLR -445 182 21 3 712 23 0 0 0 chr6 16773712 16773735 -132743302 + AT_rich Low_complexity Low_complexity 1 23 0 3 712 339 364 54 70 chr6 16774057 16774370 -132742667 + RLTR25B LTR ERVK 5 312 -716 3 712 4564 68 21 6 chr6 16774495 16775130 -132741907 + L1_Mm LINE L1 4942 5625 -539 3 713 531 217 0 0 chr6 16777352 16777504 -132739533 + (TG)n Simple_repeat Simple_repeat 2 153 0 3 713 672 174 40 7 chr6 16777787 16777937 -132739100 + Lx5 LINE L1 6893 7047 -3 3 713 23 33 0 0 chr6 16779711 16779741 -132737296 + AT_rich Low_complexity Low_complexity 1 30 0 3 713 278 380 51 51 chr6 16781402 16781560 -132735477 + Charlie4z DNA MER1_type 10 167 0 3 713 21 36 0 0 chr6 16783051 16783079 -132733958 + AT_rich Low_complexity Low_complexity 1 28 0 3 713 22 70 0 0 chr6 16785971 16786014 -132731023 + AT_rich Low_complexity Low_complexity 1 43 0 3 713 738 175 0 0 chr6 16786424 16786601 -132730436 + (TG)n Simple_repeat Simple_repeat 1 177 0 3 713 642 182 9 0 chr6 16786632 16786956 -132730081 + (TG)n Simple_repeat Simple_repeat 1 327 0 3 713 261 250 85 21 chr6 16786965 16787059 -132729978 + Lx8 LINE L1 7366 7465 -8 3 713 788 132 21 0 chr6 16787210 16787354 -132729683 + L1_Mus3 LINE L1 6489 6635 -3 3 713 275 303 101 0 chr6 16788090 16788199 -132728838 - PB1D7 SINE Alu 0 120 1 3 713 24 0 0 0 chr6 16788627 16788651 -132728386 + AT_rich Low_complexity Low_complexity 1 24 0 3 713 462 310 75 11 chr6 16788657 16788843 -132728194 + B3 SINE B2 2 199 -17 3 713 331 310 0 151 chr6 16789174 16789301 -132727736 - B3A SINE B2 -65 133 29 3 713 1591 109 8 41 chr6 16789301 16789568 -132727469 - L1Md_F2 LINE L1 -2 6580 6323 3 713 331 310 0 151 chr6 16789568 16789592 -132727445 - B3A SINE B2 -170 28 5 3 713 561 221 9 9 chr6 16791057 16791171 -132725866 - RSINE1 SINE B4 -41 124 11 3 713 518 43 0 14 chr6 16791184 16791254 -132725783 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 3 713 1853 116 100 6 chr6 16791262 16791592 -132725445 - Lx3_Mus LINE L1 -1 7008 6648 3 713 317 347 66 6 chr6 16794896 16795127 -132721910 + MLT1F LTR MaLR 243 510 -59 3 713 279 191 0 0 chr6 16796131 16796199 -132720838 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 713 450 178 0 47 chr6 16796199 16796305 -132720732 - L1_Mur2 LINE L1 -3813 2064 1964 3 713 2388 289 49 30 chr6 16797699 16798491 -132718546 + Lx8 LINE L1 6667 7473 0 3 713 585 305 9 47 chr6 16799112 16799325 -132717712 - B3 SINE B2 -11 205 1 3 713 1045 224 265 76 chr6 16799387 16799832 -132717205 - MT2A LTR ERVL 0 533 5 3 713 230 302 23 15 chr6 16799948 16800079 -132716958 + L1MEe LINE L1 956 1087 -3767 3 713 613 300 141 13 chr6 16800079 16800392 -132716645 + MTE2b LTR MaLR 1 353 -26 3 713 2193 282 52 25 chr6 16801165 16801871 -132715166 + Lx7 LINE L1 6597 7321 -375 3 713 273 65 0 88 chr6 16801875 16801943 -132715094 + T-rich Low_complexity Low_complexity 3 64 0 4 713 194 0 39 0 chr6 16802007 16802033 -132715004 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 713 485 233 147 0 chr6 16802152 16802268 -132714769 - B1_Mur2 SINE Alu -14 135 3 4 713 993 300 72 71 chr6 16802335 16803318 -132713719 + L1M3 LINE L1 4066 5049 -1091 4 713 324 350 106 62 chr6 16804225 16804481 -132712556 + B4 SINE B4 8 274 -18 4 713 339 25 0 0 chr6 16807577 16807617 -132709420 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 713 2443 65 68 0 chr6 16808161 16808485 -132708552 - ORR1A1 LTR MaLR 0 346 1 4 713 554 196 14 0 chr6 16808885 16808931 -132708106 + polypyrimidine Low_complexity Low_complexity 100 145 0 4 713 1221 106 0 0 chr6 16808931 16809111 -132707926 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 713 554 196 14 0 chr6 16809111 16809202 -132707835 + polypyrimidine Low_complexity Low_complexity 7 99 0 4 713 626 65 37 0 chr6 16809737 16809844 -132707193 - L1Md_F2 LINE L1 -1 6581 6471 4 713 10156 46 0 1 chr6 16809844 16811111 -132705926 + L1_Mm LINE L1 3377 4642 -1241 4 713 181 119 48 0 chr6 16811605 16811647 -132705390 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 4 713 336 102 0 0 chr6 16811652 16811701 -132705336 + (CATA)n Simple_repeat Simple_repeat 2 50 0 4 713 379 355 36 22 chr6 16812536 16812758 -132704279 - MIR SINE MIR -7 255 31 4 713 1043 302 69 30 chr6 16812947 16813322 -132703715 + MTE2a LTR MaLR 10 419 -2 4 713 769 51 0 0 chr6 16813665 16813763 -132703274 - Lx2A1 LINE L1 -1125 5883 5786 4 713 6548 147 36 3 chr6 16813763 16814850 -132702187 + Lx2A1 LINE L1 5880 7002 -6 4 713 318 303 55 0 chr6 16815199 16815308 -132701729 + PB1D10 SINE Alu 3 117 0 4 713 296 262 0 7 chr6 16816137 16816279 -132700758 + (TA)n Simple_repeat Simple_repeat 1 141 0 4 713 584 38 13 0 chr6 16816914 16816993 -132700044 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 4 713 26 50 0 0 chr6 16817297 16817337 -132699700 + AT_rich Low_complexity Low_complexity 1 40 0 4 713 219 63 62 31 chr6 16818042 16818107 -132698930 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 713 213 351 16 93 chr6 16819640 16819822 -132697215 - MIRb SINE MIR -35 233 66 4 713 3946 126 15 41 chr6 16820833 16821281 -132695756 - L1_Mur1 LINE L1 -779 5107 4652 4 713 3926 96 11 5 chr6 16821281 16821845 -132695192 + L1_Mus3 LINE L1 6065 6631 -7 4 713 3946 126 15 41 chr6 16821845 16822083 -132694954 - L1_Mur1 LINE L1 -1235 4651 4439 4 713 8819 128 20 1 chr6 16822093 16823570 -132693467 + Lx3B LINE L1 5450 6951 -22 4 713 21 0 0 0 chr6 16823580 16823601 -132693436 + AT_rich Low_complexity Low_complexity 1 21 0 4 713 278 253 157 69 chr6 16823619 16823721 -132693316 + B3 SINE B2 106 216 0 4 713 1781 212 173 31 chr6 16824097 16824676 -132692361 + Lx9 LINE L1 6984 7644 0 4 713 236 312 42 28 chr6 16824708 16824850 -132692187 + L1MC LINE L1 2237 2380 -3766 4 713 571 306 68 79 chr6 16824867 16825147 -132691890 + B4A SINE B4 2 278 -14 4 713 402 57 0 0 chr6 16825173 16825226 -132691811 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 713 587 0 41 0 chr6 16825508 16825581 -132691456 + (TATTG)n Simple_repeat Simple_repeat 2 77 0 4 713 339 85 0 0 chr6 16825972 16826019 -132691018 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 713 35 0 0 0 chr6 16826146 16826181 -132690856 + AT_rich Low_complexity Low_complexity 1 35 0 4 713 540 0 0 0 chr6 16826501 16826561 -132690476 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 713 21 36 0 0 chr6 16827362 16827390 -132689647 + AT_rich Low_complexity Low_complexity 1 28 0 4 713 22 0 0 0 chr6 16827653 16827675 -132689362 + AT_rich Low_complexity Low_complexity 1 22 0 4 713 3273 152 36 15 chr6 16828027 16828617 -132688420 + Lx2B LINE L1 6386 6987 -13 4 713 451 350 6 0 chr6 16828997 16829157 -132687880 + Lx8 LINE L1 6498 6658 -815 4 713 1660 307 68 26 chr6 16830111 16830847 -132686190 + Lx8 LINE L1 6704 7470 -3 4 713 793 282 144 52 chr6 16830872 16831108 -132685929 + Lx7 LINE L1 5301 5558 -322 4 713 387 0 0 0 chr6 16831108 16831151 -132685886 + (TAA)n Simple_repeat Simple_repeat 2 44 0 4 713 826 295 26 19 chr6 16831151 16831459 -132685578 + Lx7 LINE L1 5549 5895 -1801 4 713 351 0 0 0 chr6 16832084 16832123 -132684914 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 713 288 210 0 0 chr6 16833011 16833092 -132683945 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 713 432 314 82 30 chr6 16833486 16833871 -132683166 + MLT1D LTR MaLR 51 497 -8 4 713 301 70 35 0 chr6 16833894 16833951 -132683086 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 713 210 143 0 0 chr6 16834189 16834224 -132682813 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 713 220 375 0 0 chr6 16835183 16835287 -132681750 + L2 LINE L2 2264 2367 -1052 4 713 333 0 0 0 chr6 16835668 16835705 -132681332 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 713 201 365 66 11 chr6 16840906 16841089 -132675948 + MIRb SINE MIR 75 267 -1 4 713 218 288 0 24 chr6 16841094 16841176 -132675861 + GA-rich Low_complexity Low_complexity 2 81 0 4 713 318 225 8 77 chr6 16842316 16842446 -132674591 - Lx7 LINE L1 -22 7674 7554 4 713 947 94 14 0 chr6 16842582 16842720 -132674317 - L1Md_F LINE L1 -5706 813 674 4 713 6997 53 6 0 chr6 16842720 16843594 -132673443 + L1Md_F2 LINE L1 5704 6582 0 4 713 731 290 18 22 chr6 16843611 16843840 -132673197 - Lx7 LINE L1 -346 7350 7123 4 713 231 287 54 36 chr6 16845472 16845584 -132671453 - PB1D9 SINE Alu -5 115 2 4 713 264 30 0 0 chr6 16846443 16846476 -132670561 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4 713 2114 126 104 3 chr6 16846476 16846851 -132670186 - Lx3C LINE L1 -15 6961 6549 4 713 303 125 42 42 chr6 16848959 16849101 -132667936 + (TA)n Simple_repeat Simple_repeat 1 142 0 4 713 193 366 91 115 chr6 16849462 16849845 -132667192 + L2 LINE L2 1884 2257 -1162 4 713 484 317 47 24 chr6 16850441 16850696 -132666341 + Lx9 LINE L1 7196 7456 -188 4 713 2188 209 75 11 chr6 16850749 16851203 -132665834 - Lx5 LINE L1 -1 7049 6567 4 713 332 211 0 0 chr6 16851217 16851274 -132665763 + Lx5 LINE L1 6473 6529 -521 4 713 431 258 99 37 chr6 16851271 16851432 -132665605 + Lx5 LINE L1 6872 7042 -8 4 713 33 25 0 0 chr6 16852399 16852439 -132664598 + AT_rich Low_complexity Low_complexity 1 40 0 4 713 3618 102 29 11 chr6 16852994 16853079 -132663958 + Lx3_Mus LINE L1 6435 6519 -490 4 713 432 0 0 0 chr6 16853079 16853127 -132663910 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 713 3618 102 29 11 chr6 16853127 16853339 -132663698 + Lx3_Mus LINE L1 6520 6737 -272 4 713 4219 19 2 0 chr6 16853339 16853820 -132663217 - LTRIS_Mm LTR ERV1 0 482 1 4 713 3618 102 29 11 chr6 16853820 16854078 -132662959 + Lx3_Mus LINE L1 6738 7000 -9 4 713 246 160 0 0 chr6 16856763 16856813 -132660224 + A-rich Low_complexity Low_complexity 1 50 0 4 713 4371 31 0 0 chr6 16859553 16860066 -132656971 + L1Md_T LINE L1 6070 6582 0 4 713 198 0 0 0 chr6 16860923 16860945 -132656092 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 4 713 234 174 0 0 chr6 16861699 16861745 -132655292 + (ATGGTG)n Simple_repeat Simple_repeat 5 50 0 4 713 193 330 150 59 chr6 16861770 16861957 -132655080 - MIR SINE MIR -24 238 35 4 713 23 0 0 0 chr6 16862074 16862097 -132654940 + AT_rich Low_complexity Low_complexity 1 23 0 4 713 540 242 24 8 chr6 16862291 16862416 -132654621 + B3A SINE B2 4 130 -68 4 713 291 54 0 0 chr6 16862420 16862457 -132654580 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 713 22 0 0 0 chr6 16862458 16862480 -132654557 + AT_rich Low_complexity Low_complexity 1 22 0 4 713 498 227 103 70 chr6 16862621 16862806 -132654231 + MER53 DNA hAT 2 192 -1 4 713 25 31 0 0 chr6 16863650 16863682 -132653355 + AT_rich Low_complexity Low_complexity 1 32 0 4 713 919 331 121 16 chr6 16863962 16864410 -132652627 + Lx8 LINE L1 6833 7327 -146 4 713 772 309 41 41 chr6 16864585 16864831 -132652206 + B4A SINE B4 35 280 -12 4 713 275 302 15 15 chr6 16864922 16865053 -132651984 + L1MEc LINE L1 60 190 -6210 4 713 1836 171 14 111 chr6 16865792 16866206 -132650831 - RMER4B LTR ERVK -1 584 211 4 713 3792 148 34 10 chr6 16866221 16866848 -132650189 - RLTR26 LTR ERVK 0 642 1 4 713 1157 162 10 19 chr6 16866869 16867076 -132649961 - RMER4B LTR ERVK -380 205 1 4 713 4532 159 13 2 chr6 16867162 16868369 -132648668 - Lx3C LINE L1 -614 6362 5140 4 713 2928 171 60 0 chr6 16868369 16868938 -132648099 + Lx3C LINE L1 6374 6976 0 4 713 27 29 0 0 chr6 16869387 16869421 -132647616 + AT_rich Low_complexity Low_complexity 1 34 0 4 713 580 311 89 40 chr6 16869647 16870057 -132646980 + L1ME1 LINE L1 5254 5712 -467 4 713 742 291 58 68 chr6 16870057 16870352 -132646685 - B4A SINE B4 0 292 1 4 713 580 311 89 40 chr6 16870352 16870638 -132646399 + L1ME1 LINE L1 5713 5983 -196 4 713 465 215 0 0 chr6 16870723 16870872 -132646165 + (TA)n Simple_repeat Simple_repeat 1 149 0 4 713 361 289 63 0 chr6 16870893 16871035 -132646002 - L1MA8 LINE L1 -512 5779 5629 4 713 496 267 69 37 chr6 16871017 16871235 -132645802 + L1MA8 LINE L1 5868 6092 -199 4 713 21 0 0 0 chr6 16871374 16871395 -132645642 + AT_rich Low_complexity Low_complexity 1 21 0 4 713 550 309 17 0 chr6 16871662 16871840 -132645197 + B3A SINE B2 1 181 -17 4 713 13087 25 0 0 chr6 16872565 16874775 -132642262 - L1Md_T LINE L1 -1 6581 4372 4 713 540 0 0 0 chr6 16877462 16877522 -132639515 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 713 192 97 0 0 chr6 16877794 16877825 -132639212 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 713 25 90 0 0 chr6 16877950 16878017 -132639020 + AT_rich Low_complexity Low_complexity 1 67 0 4 713 338 268 147 16 chr6 16878301 16878430 -132638607 + MamRep605 Unknown Unknown 569 714 -162 4 713 266 219 0 30 chr6 16878923 16878989 -132638048 + RSINE1 SINE B4 78 141 -24 4 713 300 246 29 0 chr6 16881192 16881261 -132635776 + ID4_ SINE ID 4 74 -9 4 713 1516 54 16 0 chr6 16881894 16882080 -132634957 - B2_Mm2 SINE B2 -5 190 2 4 713 739 262 115 0 chr6 16882295 16882486 -132634551 - URR1B DNA MER1_type -1 224 12 4 713 225 253 0 33 chr6 16882551 16882641 -132634396 + (TAAA)n Simple_repeat Simple_repeat 4 90 0 4 713 253 333 42 0 chr6 16882766 16882886 -132634151 + L1M2 LINE L1 4823 4947 -1196 4 713 1417 291 74 89 chr6 16882893 16883595 -132633442 + Lx7 LINE L1 4858 5531 -316 5 713 3229 88 19 12 chr6 16883595 16884078 -132632959 + Lx LINE L1 6169 6654 0 5 713 1417 290 93 11 chr6 16884078 16884453 -132632584 + Lx7 LINE L1 5532 5961 -1047 5 713 1254 278 77 6 chr6 16884573 16884638 -132632399 - MTD LTR MaLR -43 376 309 5 713 4248 118 9 23 chr6 16884638 16885296 -132631741 + Lx2 LINE L1 6349 6997 0 5 713 1254 278 77 6 chr6 16885296 16885570 -132631467 - MTD LTR MaLR -111 308 13 5 713 26 0 0 0 chr6 16887057 16887083 -132629954 + AT_rich Low_complexity Low_complexity 1 26 0 5 713 520 292 160 42 chr6 16887119 16887831 -132629206 + L1M4 LINE L1 3912 4707 -1439 5 713 6092 152 7 1 chr6 16887922 16887989 -132629048 + L1_Mus4 LINE L1 4864 4930 -953 5 713 414 0 0 0 chr6 16887989 16888035 -132629002 + (TTA)n Simple_repeat Simple_repeat 3 48 0 5 713 1002 78 7 0 chr6 16888035 16888177 -132628860 - L1_Mus2 LINE L1 -18 6548 6406 5 713 6371 112 13 4 chr6 16888177 16889736 -132627301 + L1_Mus4 LINE L1 4931 6507 -129 5 713 189 0 0 0 chr6 16889762 16889783 -132627254 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 713 775 333 31 47 chr6 16889786 16890208 -132626829 - Lx8 LINE L1 -544 6929 6515 5 713 541 307 36 0 chr6 16890288 16890480 -132626557 + Lx8 LINE L1 7071 7269 -204 5 713 589 251 108 11 chr6 16890632 16890918 -132626119 + L1M4 LINE L1 4735 5048 -1098 5 713 25 51 0 0 chr6 16891761 16891800 -132625237 + AT_rich Low_complexity Low_complexity 1 39 0 5 713 27 62 0 0 chr6 16891818 16891866 -132625171 + AT_rich Low_complexity Low_complexity 1 48 0 5 713 236 374 64 6 chr6 16893711 16893883 -132623154 - L2 LINE L2 -354 3065 2884 5 713 192 25 48 48 chr6 16895514 16895556 -132621481 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 5 713 1013 58 0 14 chr6 16895556 16895684 -132621353 - B1_Mus1 SINE Alu -9 139 12 5 713 827 312 86 0 chr6 16895692 16895971 -132621066 - MTD LTR MaLR -95 324 22 5 713 3330 33 2 17 chr6 16896925 16897327 -132619710 + MTA_Mm LTR MaLR 1 396 0 5 713 23 78 0 0 chr6 16899445 16899496 -132617541 + AT_rich Low_complexity Low_complexity 1 51 0 5 713 203 139 47 0 chr6 16899565 16899608 -132617429 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 5 713 870 189 48 138 chr6 16900543 16900864 -132616173 - MT2B LTR ERVL -157 444 2 5 713 383 258 15 15 chr6 16900984 16901118 -132615919 + L1MDb LINE L1 882 1015 -5394 5 713 236 286 29 30 chr6 16901146 16901317 -132615720 + L1MDb LINE L1 3866 4039 -2367 5 713 4321 48 4 13 chr6 16901398 16901945 -132615092 + L1_Mus1 LINE L1 6022 6563 -4 5 713 1081 242 99 3 chr6 16902317 16902618 -132614419 - ORR1D-int LTR MaLR -684 686 357 5 713 975 233 29 132 chr6 16902618 16902929 -132614108 + RMER19C LTR ERVK 1 279 -332 5 713 202 244 0 0 chr6 16903010 16903055 -132613982 + A-rich Low_complexity Low_complexity 1 45 0 5 713 612 146 0 0 chr6 16903055 16903158 -132613879 + (GGAGA)n Simple_repeat Simple_repeat 2 104 0 5 713 245 255 0 0 chr6 16903162 16903209 -132613828 + RMER19C LTR ERVK 248 294 -608 5 713 810 298 43 63 chr6 16903201 16903548 -132613489 + RMER19C LTR ERVK 526 865 -37 5 713 1214 62 32 59 chr6 16903641 16903828 -132613209 - ORR1A2 LTR MaLR 0 327 146 5 713 9946 161 50 21 chr6 16903839 16905739 -132611298 - ORR1A2-int LTR MaLR -1 1962 7 5 713 2213 74 21 60 chr6 16905739 16906071 -132610966 - ORR1A2 LTR MaLR -8 319 1 5 713 650 292 13 7 chr6 16906072 16906227 -132610810 - ID_B1 SINE B4 -57 167 12 5 89 498 337 113 52 chr6 16908210 16908633 -132608404 + L4 LINE RTE 995 1443 -586 5 714 414 0 0 0 chr6 16910128 16910174 -132606863 + (TAAAA)n Simple_repeat Simple_repeat 4 49 0 5 714 2808 128 85 8 chr6 16911116 16911598 -132605439 + RLTR11A LTR ERVK 10 528 0 5 714 2660 129 27 2 chr6 16912519 16912931 -132604106 - Lx LINE L1 -6 6648 6227 5 714 180 77 0 0 chr6 16913120 16913146 -132603891 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 5 714 540 0 0 0 chr6 16913312 16913372 -132603665 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 714 222 220 34 0 chr6 16913818 16913877 -132603160 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 5 714 253 94 0 72 chr6 16914643 16914712 -132602325 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 5 714 1068 97 14 0 chr6 16914712 16914857 -132602180 - B1_Mus1 SINE Alu 0 148 2 5 714 21 36 0 0 chr6 16914961 16914989 -132602048 + AT_rich Low_complexity Low_complexity 1 28 0 5 714 336 273 159 0 chr6 16916177 16916309 -132600728 + MIRb SINE MIR 102 254 -14 5 714 23 0 0 0 chr6 16918289 16918312 -132598725 + AT_rich Low_complexity Low_complexity 1 23 0 5 714 401 258 34 0 chr6 16919236 16919325 -132597712 + RSINE1 SINE B4 57 148 -17 5 714 743 21 11 0 chr6 16919325 16919418 -132597619 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 5 714 481 208 0 28 chr6 16919440 16919552 -132597485 + B1_Mur1 SINE Alu 15 146 -3 5 714 1115 256 17 106 chr6 16920823 16921043 -132595994 + ORR1C1 LTR MaLR 8 224 -154 5 714 465 19 0 0 chr6 16921043 16921097 -132595940 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 714 1115 256 17 106 chr6 16921097 16921283 -132595754 + ORR1C1 LTR MaLR 225 377 -1 5 714 2041 66 71 24 chr6 16922158 16922452 -132594585 + L1_Mus2 LINE L1 6259 6566 0 5 714 486 49 0 0 chr6 16922741 16922802 -132594235 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 714 633 186 0 0 chr6 16923234 16923358 -132593679 + (CA)n Simple_repeat Simple_repeat 1 124 0 5 714 1204 107 0 0 chr6 16923658 16923826 -132593211 + B2_Mm2 SINE B2 1 168 -27 5 714 184 231 122 49 chr6 16923836 16923918 -132593119 - L3 LINE CR1 -4368 121 34 5 714 384 22 0 0 chr6 16923959 16924004 -132593033 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 714 1152 82 0 0 chr6 16925180 16925326 -132591711 + B1_Mus2 SINE Alu 2 147 0 5 714 204 67 0 0 chr6 16925326 16925356 -132591681 + (CAAAAA)n Simple_repeat Simple_repeat 5 34 0 5 714 820 291 37 76 chr6 16925883 16926232 -132590805 + L1MB7 LINE L1 5587 5916 -268 5 714 1131 8 0 0 chr6 16926232 16926360 -132590677 + (GGGGA)n Simple_repeat Simple_repeat 4 131 0 5 714 820 291 37 76 chr6 16926360 16926497 -132590540 + L1MB7 LINE L1 5917 6054 -130 5 714 279 0 0 0 chr6 16928240 16928271 -132588766 + (A)n Simple_repeat Simple_repeat 1 31 0 5 714 247 136 0 57 chr6 16929694 16929764 -132587273 + (TA)n Simple_repeat Simple_repeat 1 66 0 5 714 293 348 5 32 chr6 16930101 16930288 -132586749 + B3A SINE B2 1 182 -16 5 714 195 42 0 0 chr6 16930563 16930587 -132586450 + (CG)n Simple_repeat Simple_repeat 2 25 0 5 714 302 162 26 18 chr6 16931339 16931452 -132585585 + T-rich Low_complexity Low_complexity 2 115 0 5 714 303 348 34 0 chr6 16931688 16931806 -132585231 + HAL1 LINE L1 1255 1376 -1131 5 714 183 114 0 0 chr6 16931948 16931983 -132585054 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 714 207 0 0 0 chr6 16932192 16932215 -132584822 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 714 1294 81 29 0 chr6 16932909 16933083 -132583954 + B2_Mm2 SINE B2 3 181 -14 5 714 231 204 0 0 chr6 16933714 16933768 -132583269 + T-rich Low_complexity Low_complexity 1 54 0 5 714 331 291 120 70 chr6 16933851 16934110 -132582927 + B4 SINE B4 3 274 -18 5 714 342 0 0 0 chr6 16934571 16934609 -132582428 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 714 840 304 20 8 chr6 16935005 16935254 -132581783 + B4 SINE B4 41 292 0 5 714 496 345 13 26 chr6 16935320 16935472 -132581565 + RSINE1 SINE B4 12 161 -4 5 714 318 259 152 26 chr6 16935547 16935777 -132581260 + L1MA8 LINE L1 5988 6246 -45 5 714 413 338 20 0 chr6 16936491 16936639 -132580398 + CT-rich Low_complexity Low_complexity 1 151 0 5 714 201 74 0 0 chr6 16937798 16937825 -132579212 + (CATATA)n Simple_repeat Simple_repeat 1 27 0 5 714 2057 51 0 0 chr6 16938046 16938301 -132578736 - L1Md_F2 LINE L1 -12 6570 6316 5 714 32 67 0 0 chr6 16938587 16938647 -132578390 + AT_rich Low_complexity Low_complexity 1 60 0 5 714 668 319 6 6 chr6 16938651 16938821 -132578216 + B3A SINE B2 2 171 -27 5 714 561 125 0 0 chr6 16938822 16938910 -132578127 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 714 623 159 17 52 chr6 16939290 16939462 -132577575 + HAL1-2a_MD LINE L1 2340 2505 -519 5 714 614 179 6 64 chr6 16939469 16939642 -132577395 + HAL1-2a_MD LINE L1 2343 2505 -519 5 714 258 381 37 0 chr6 16944121 16944255 -132572782 + MIRb SINE MIR 39 177 -91 5 714 204 40 0 0 chr6 16945046 16945071 -132571966 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 5 714 225 0 0 0 chr6 16946165 16946190 -132570847 + (A)n Simple_repeat Simple_repeat 1 25 0 5 714 22 0 0 0 chr6 16947272 16947294 -132569743 + AT_rich Low_complexity Low_complexity 1 22 0 5 714 1272 286 52 84 chr6 16947433 16948087 -132568950 + Lx8 LINE L1 6841 7473 0 5 714 252 0 0 0 chr6 16948487 16948515 -132568522 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 714 203 125 0 40 chr6 16949071 16949121 -132567916 + T-rich Low_complexity Low_complexity 2 49 0 5 714 320 351 21 0 chr6 16949161 16949255 -132567782 + MLT1J LTR MaLR 113 208 -304 5 714 296 321 107 19 chr6 16950382 16950598 -132566439 + MLT2D LTR ERVL 7 241 -173 5 714 234 193 73 33 chr6 16950820 16950853 -132566184 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 714 186 43 0 0 chr6 16950853 16950876 -132566161 + (CATAT)n Simple_repeat Simple_repeat 3 25 0 5 714 441 213 35 26 chr6 16950876 16951180 -132565857 + (TA)n Simple_repeat Simple_repeat 1 306 0 5 714 225 0 0 0 chr6 16951180 16951205 -132565832 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 714 1973 329 97 49 chr6 16952039 16953493 -132563544 + Lx8 LINE L1 5816 7339 -134 5 714 1184 207 56 0 chr6 16953530 16953743 -132563294 + URR1B DNA MER1_type 1 225 0 5 714 180 0 0 0 chr6 16953856 16953876 -132563161 + (TAA)n Simple_repeat Simple_repeat 1 20 0 5 714 1176 60 0 0 chr6 16954038 16954187 -132562850 - RMER17A LTR ERVK -602 149 1 5 714 34582 76 1 15 chr6 16954232 16959795 -132557242 + L1Md_F2 LINE L1 104 5586 -297 5 714 8716 45 1 3 chr6 16959795 16960791 -132556246 + L1Md_F2 LINE L1 5587 6580 -2 5 714 293 194 48 0 chr6 16960802 16960864 -132556173 - L1_Mur3 LINE L1 -665 5215 5151 5 714 1962 250 143 9 chr6 16960848 16961394 -132555643 + Lx6 LINE L1 6762 7380 -80 5 714 528 195 6 17 chr6 16961756 16961935 -132555102 + GA-rich Low_complexity Low_complexity 1 176 0 5 714 3165 68 29 3 chr6 16962195 16962581 -132554456 + MTA_Mm LTR MaLR 1 396 0 6 714 1122 66 0 7 chr6 16962709 16962847 -132554190 + B1_Mm SINE Alu 1 137 -10 6 714 273 57 0 0 chr6 16962847 16962882 -132554155 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 714 258 291 118 35 chr6 16963630 16963793 -132553244 - L2a LINE L2 -283 3143 2967 6 714 630 278 27 72 chr6 16963982 16964203 -132552834 - B4A SINE B4 -1 291 81 6 714 321 297 35 18 chr6 16965204 16965317 -132551720 - PB1D10 SINE Alu -2 115 1 6 714 252 226 0 0 chr6 16965323 16965385 -132551652 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 6 714 36185 65 2 3 chr6 16965468 16971687 -132545350 - L1Md_F2 LINE L1 0 6585 280 6 714 1111 268 53 9 chr6 16972252 16972578 -132544459 + MTEa LTR MaLR 4 338 -41 6 714 915 304 58 14 chr6 16972654 16972931 -132544106 - B4 SINE B4 -1 291 3 6 714 640 261 124 15 chr6 16972979 16973181 -132543856 + ORR1D-int LTR MaLR 59 282 -1088 6 714 842 188 0 0 chr6 16973231 16973369 -132543668 - B1_Mus2 SINE Alu 0 147 10 6 714 644 271 141 56 chr6 16973390 16973710 -132543327 + ORR1D-int LTR MaLR 300 646 -724 6 714 1717 249 25 60 chr6 16974758 16975278 -132541759 - RLTR11A2 LTR ERVK -25 502 1 6 714 416 302 116 0 chr6 16975386 16975482 -132541555 + Lx9 LINE L1 7372 7480 -164 6 714 351 0 0 0 chr6 16975482 16975521 -132541516 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 6 714 416 302 116 0 chr6 16975521 16975639 -132541398 + Lx9 LINE L1 7481 7610 -34 6 714 630 268 0 27 chr6 16975780 16975926 -132541111 + ID_B1 SINE B4 81 222 -2 6 714 26 30 0 0 chr6 16977117 16977150 -132539887 + AT_rich Low_complexity Low_complexity 1 33 0 6 714 282 320 9 48 chr6 16977409 16977514 -132539523 + PB1D10 SINE Alu 7 107 -10 6 714 343 322 35 0 chr6 16978768 16978883 -132538154 - L1ME1 LINE L1 -20 6159 6041 6 714 24 85 0 0 chr6 16979187 16979246 -132537791 + AT_rich Low_complexity Low_complexity 1 59 0 6 714 1529 75 16 0 chr6 16979260 16979446 -132537591 - B2_Mm2 SINE B2 -6 189 1 6 714 795 293 138 26 chr6 16979507 16979963 -132537074 - RLTR12B LTR ERVK -11 517 11 6 714 359 247 24 24 chr6 16980169 16980252 -132536785 - MTE2b LTR MaLR -182 197 115 6 714 822 176 92 36 chr6 16980252 16980447 -132536590 - RMER10B LTR ERVL 0 398 193 6 714 1401 189 28 21 chr6 16980454 16980745 -132536292 - RMER10B LTR ERVL -105 293 1 6 714 452 288 84 44 chr6 16980770 16981021 -132536016 - RMER17C-int LTR ERVK -59 3179 2919 6 714 313 303 120 62 chr6 16981045 16981270 -132535767 - RMER17C-int LTR ERVK -392 2846 2609 6 714 2761 187 65 41 chr6 16981450 16982112 -132534925 - RLTR19-int LTR ERVK -3130 3007 2330 6 714 259 152 0 21 chr6 16982156 16982203 -132534834 - RLTR19-int LTR ERVK -5077 1060 1015 6 714 182 37 0 36 chr6 16982262 16982290 -132534747 + (CTG)n Simple_repeat Simple_repeat 3 29 0 6 714 1332 194 0 19 chr6 16982447 16982705 -132534332 + RMER10B LTR ERVL 11 263 -135 6 714 532 101 11 11 chr6 16982719 16982809 -132534228 + (TCC)n Simple_repeat Simple_repeat 2 91 0 6 714 1030 183 15 15 chr6 16982809 16983009 -132534028 + RMER10B LTR ERVL 195 394 -4 6 714 363 224 13 0 chr6 16983013 16983089 -132533948 - MTE2b LTR MaLR -260 119 43 6 714 1296 7 20 0 chr6 16983237 16983416 -132533621 + L1Md_T LINE L1 6430 6582 0 6 714 1465 51 0 0 chr6 16983416 16983594 -132533443 + ORR1A1 LTR MaLR 112 289 -57 6 714 387 0 0 0 chr6 16983598 16983641 -132533396 + (A)n Simple_repeat Simple_repeat 1 43 0 6 714 3987 200 41 81 chr6 16984053 16984950 -132532087 + RMER1B Other Other 86 925 -141 6 714 249 33 0 0 chr6 16984950 16984980 -132532057 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 6 714 3987 200 41 81 chr6 16984980 16985099 -132531938 + RMER1B Other Other 926 1062 -4 6 714 186 43 0 0 chr6 16985120 16985143 -132531894 + (GGAGAA)n Simple_repeat Simple_repeat 3 25 0 6 714 2270 142 6 0 chr6 16985166 16985491 -132531546 - ORR1A2 LTR MaLR 0 327 1 6 714 4616 22 2 0 chr6 16985557 16986049 -132530988 - MT2_Mm LTR ERVL 0 493 1 6 714 322 0 0 0 chr6 16986049 16986087 -132530950 - MERVL-int LTR ERVL 0 5485 5448 6 714 387 167 46 35 chr6 16986087 16986174 -132530863 - ORR1A2-int LTR MaLR -1323 640 553 6 714 41341 16 14 0 chr6 16986174 16991461 -132525576 - MERVL-int LTR ERVL -125 5360 1 6 714 4636 20 2 0 chr6 16991461 16991953 -132525084 - MT2_Mm LTR ERVL 0 493 1 6 714 182 294 20 0 chr6 16992055 16992106 -132524931 - MIRm SINE MIR -112 164 113 6 714 994 241 29 0 chr6 16992782 16992989 -132524048 + B3 SINE B2 1 213 -3 6 714 264 109 31 52 chr6 16993616 16993713 -132523324 + T-rich Low_complexity Low_complexity 2 96 0 6 714 348 88 0 0 chr6 16994384 16994441 -132522596 + (A)n Simple_repeat Simple_repeat 1 57 0 6 714 3561 179 90 2 chr6 16994460 16995096 -132521941 + RLTR17 LTR ERVK 1 692 0 6 714 3287 64 13 8 chr6 16995520 16995914 -132521123 - MTA_Mm LTR MaLR 0 396 1 6 714 1254 212 48 19 chr6 16996171 16996440 -132520597 + MTD LTR MaLR 3 279 -140 6 714 1218 224 153 13 chr6 16996936 16997244 -132519793 - MTD LTR MaLR -14 405 55 6 714 1026 169 0 0 chr6 16997453 16997625 -132519412 - URR1A DNA MER1_type 0 226 55 6 714 251 333 54 0 chr6 17000425 17000536 -132516501 + MLT1G3 LTR MaLR 22 138 -457 1 714 901 325 147 4 chr6 17000812 17001303 -132515734 - MER77 LTR ERVL -34 573 13 2 714 591 366 52 44 chr6 17001324 17001690 -132515347 + MLT1G3 LTR MaLR 216 584 -11 1 714 801 185 228 0 chr6 17001691 17001875 -132515162 + URR1A DNA MER1_type 1 226 0 3 714 726 147 0 29 chr6 17002327 17002467 -132514570 - B1_Mus2 SINE Alu 0 147 12 4 714 405 250 34 73 chr6 17002328 17002505 -132514532 - ID_B1 SINE B4 0 224 55 5 714 215 100 0 48 chr6 17002607 17002649 -132514388 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 714 1121 83 0 0 chr6 17002722 17002879 -132514158 + B2_Mm2 SINE B2 2 158 -37 7 714 351 0 0 0 chr6 17002881 17002920 -132514117 + (CATA)n Simple_repeat Simple_repeat 2 40 0 8 714 291 323 134 46 chr6 17002982 17003332 -132513705 + MLT1G3-int LTR MaLR 670 1050 -439 1 714 1437 210 131 54 chr6 17003333 17003776 -132513261 + Lx7 LINE L1 7013 7489 -207 9 714 576 40 0 0 chr6 17004053 17004128 -132512909 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 714 480 35 0 0 chr6 17004128 17004185 -132512852 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 714 1532 41 5 0 chr6 17004398 17004592 -132512445 - L1Md_F2 LINE L1 0 6582 6388 1 714 293 317 138 3 chr6 17004619 17004887 -132512150 + MLT1G3 LTR MaLR 23 333 -246 1 714 598 299 24 0 chr6 17005078 17005245 -132511792 + MER20 DNA MER1_type 1 171 -48 1 714 816 310 44 62 chr6 17005731 17006165 -132510872 + MLT1C LTR MaLR 42 467 0 1 714 409 269 177 0 chr6 17006222 17006352 -132510685 + RSINE1 SINE B4 6 158 -7 1 714 686 218 0 0 chr6 17006441 17006574 -132510463 - B1_Mus1 SINE Alu -5 143 11 1 714 354 23 0 0 chr6 17007486 17007529 -132509508 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 714 284 0 0 27 chr6 17007915 17007952 -132509085 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1 714 309 286 62 70 chr6 17008113 17008241 -132508796 + ID_B1 SINE B4 84 210 -14 1 714 252 280 140 0 chr6 17008515 17008622 -132508415 + RSINE1 SINE B4 4 125 -40 2 714 1641 132 95 0 chr6 17008751 17009046 -132507991 - IAPEY2_LTR LTR ERVK 0 357 35 2 714 180 176 0 0 chr6 17009085 17009119 -132507918 + CT-rich Low_complexity Low_complexity 2 35 0 2 714 237 283 9 83 chr6 17009292 17009400 -132507637 + MER3 DNA MER1_type 94 193 -16 2 714 240 246 60 2 chr6 17010561 17010651 -132506386 - B3A SINE B2 -116 100 1 2 714 423 345 29 15 chr6 17011575 17011781 -132505256 + Lx8 LINE L1 7118 7326 -147 2 714 1368 62 67 0 chr6 17011924 17012103 -132504934 - B2_Mm1t SINE B2 -1 192 2 2 714 658 261 16 43 chr6 17014068 17014256 -132502781 + B3A SINE B2 2 184 -14 2 714 640 268 82 49 chr6 17016560 17016866 -132500171 + L1MC1 LINE L1 5988 6303 -30 2 714 1001 45 0 112 chr6 17016967 17017119 -132499918 + B1_Mm SINE Alu 1 135 -12 2 714 234 0 0 0 chr6 17017120 17017146 -132499891 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 714 279 0 0 0 chr6 17018808 17018839 -132498198 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 3 714 2146 189 37 89 chr6 17018915 17019478 -132497559 - RMER5 LTR ERV1 0 534 1 3 714 534 280 156 5 chr6 17019609 17019821 -132497216 - MTE2b LTR MaLR -7 372 129 3 714 310 232 0 14 chr6 17019848 17019918 -132497119 - MTE2b LTR MaLR -310 69 1 3 714 21 0 0 0 chr6 17021795 17021816 -132495221 + AT_rich Low_complexity Low_complexity 1 21 0 3 714 687 239 87 5 chr6 17023694 17023879 -132493158 + Lx5 LINE L1 6851 7050 0 3 714 185 0 40 0 chr6 17025352 17025377 -132491660 + (GTTTG)n Simple_repeat Simple_repeat 1 26 0 3 714 367 288 102 0 chr6 17025379 17025497 -132491540 - B1F SINE Alu -8 141 12 3 714 399 318 15 15 chr6 17025508 17025639 -132491398 - ID_B1 SINE B4 -7 217 87 3 714 555 328 55 13 chr6 17027705 17028017 -132489020 + MLT1H LTR MaLR 72 396 -153 3 714 5531 7 0 0 chr6 17028381 17028986 -132488051 + L1Md_A LINE L1 5978 6582 0 4 714 249 210 32 0 chr6 17029014 17029076 -132487961 - RCHARR1 DNA MER1_type -64 910 847 4 714 249 33 0 0 chr6 17029076 17029106 -132487931 + (A)n Simple_repeat Simple_repeat 1 30 0 4 714 186 71 0 0 chr6 17030255 17030283 -132486754 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 714 330 244 17 42 chr6 17032090 17032210 -132484827 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 4 714 1527 281 75 27 chr6 17034660 17035297 -132481740 - Lx9 LINE L1 -392 7252 6585 4 714 1981 69 68 7 chr6 17035426 17035704 -132481333 + L1Md_F2 LINE L1 6276 6570 -12 4 714 24 53 0 0 chr6 17036071 17036109 -132480928 + AT_rich Low_complexity Low_complexity 1 38 0 4 714 233 319 0 0 chr6 17036848 17036917 -132480120 - ID4_ SINE ID 0 83 15 4 714 575 121 0 10 chr6 17037394 17037494 -132479543 + (TCC)n Simple_repeat Simple_repeat 1 99 0 4 714 1168 115 62 11 chr6 17038194 17038370 -132478667 + B2_Mm2 SINE B2 2 186 -9 5 714 718 227 109 40 chr6 17038391 17038593 -132478444 - B3 SINE B2 0 216 1 5 715 370 354 84 42 chr6 17039781 17040148 -132476889 - MLT1E3 LTR MaLR -9 615 227 5 715 351 0 0 0 chr6 17041349 17041388 -132475649 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 715 414 0 0 0 chr6 17041388 17041433 -132475604 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 715 195 42 0 0 chr6 17042027 17042051 -132474986 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 5 715 277 256 0 44 chr6 17044009 17044144 -132472893 + (TTATG)n Simple_repeat Simple_repeat 1 129 0 5 715 3364 136 2 8 chr6 17044213 17044732 -132472305 - Lx2 LINE L1 0 6997 6482 5 715 218 188 21 0 chr6 17045413 17045461 -132471576 - B1F SINE Alu -7 142 94 5 715 241 176 33 66 chr6 17045524 17045615 -132471422 + GA-rich Low_complexity Low_complexity 3 90 0 5 715 198 0 0 0 chr6 17045768 17045790 -132471247 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 6 715 279 0 0 0 chr6 17045985 17046016 -132471021 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 715 202 0 29 57 chr6 17046412 17046447 -132470590 + (TTA)n Simple_repeat Simple_repeat 2 35 0 6 715 867 238 19 29 chr6 17047937 17048145 -132468892 - B3 SINE B2 -10 206 1 6 715 1648 318 91 18 chr6 17048455 17049227 -132467810 - Lx8 LINE L1 -9 7464 6637 6 715 820 232 54 0 chr6 17050748 17050933 -132466104 + B3 SINE B2 11 205 -11 6 715 429 103 0 0 chr6 17051809 17051877 -132465160 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 715 329 330 0 20 chr6 17053792 17053894 -132463143 + ID_B1 SINE B4 3 102 -122 6 715 380 254 50 58 chr6 17056113 17056234 -132460803 - PB1D7 SINE Alu 0 120 1 6 715 692 287 25 10 chr6 17056340 17056537 -132460500 - ID_B1 SINE B4 0 224 25 6 715 267 140 0 0 chr6 17056676 17056726 -132460311 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 715 551 277 115 25 chr6 17057275 17057533 -132459504 - MTD LTR MaLR -13 383 92 7 715 572 187 285 6 chr6 17057564 17057736 -132459301 + URR1B DNA MER1_type 5 224 -1 7 715 208 49 23 47 chr6 17058049 17058092 -132458945 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 7 715 528 45 0 0 chr6 17058533 17058600 -132458437 + (TA)n Simple_repeat Simple_repeat 1 67 0 7 715 2419 167 41 54 chr6 17058672 17058839 -132458198 - RMER1B Other Other 0 1066 920 7 715 186 0 28 56 chr6 17058839 17058875 -132458162 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 7 715 2419 169 42 52 chr6 17058875 17059258 -132457779 - RMER1B Other Other -147 919 402 7 715 198 0 0 0 chr6 17060276 17060298 -132456739 + (CAA)n Simple_repeat Simple_repeat 3 24 0 7 715 518 156 15 15 chr6 17061743 17061831 -132455206 + polypyrimidine Low_complexity Low_complexity 43 131 0 7 715 1296 84 0 0 chr6 17061831 17062010 -132455027 + (TTCTCC)n Simple_repeat Simple_repeat 1 179 0 7 715 518 156 15 15 chr6 17062010 17062051 -132454986 + polypyrimidine Low_complexity Low_complexity 3 42 0 8 715 547 277 58 6 chr6 17062296 17062452 -132454585 - MER5A DNA MER1_type 0 189 26 8 715 207 0 0 0 chr6 17062758 17062781 -132454256 + (ATTTG)n Simple_repeat Simple_repeat 2 24 0 8 715 342 0 0 0 chr6 17063091 17063129 -132453908 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 715 501 327 6 0 chr6 17063724 17063949 -132453088 + (TG)n Simple_repeat Simple_repeat 1 226 0 8 715 197 108 27 0 chr6 17063953 17063990 -132453047 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 715 1092 173 5 24 chr6 17064112 17064325 -132452712 - URR1A DNA MER1_type -1 225 17 8 715 286 340 104 37 chr6 17064347 17064525 -132452512 - MIR SINE MIR -73 195 9 8 715 402 79 0 0 chr6 17065458 17065521 -132451516 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 8 715 718 256 202 17 chr6 17066993 17067231 -132449806 + MLT1A0 LTR MaLR 84 365 0 8 715 3636 185 55 48 chr6 17067494 17068299 -132448738 - RLTR40 LTR ERVK -7 810 1 9 715 351 220 132 0 chr6 17068299 17068390 -132448647 + B1_Mur1 SINE Alu 46 148 -1 9 715 427 258 122 16 chr6 17068536 17068725 -132448312 - B3 SINE B2 -6 210 2 9 715 397 304 11 107 chr6 17072560 17072737 -132444300 + RSINE1 SINE B4 4 163 -2 9 715 1127 75 7 0 chr6 17072947 17073093 -132443944 + B1_Mus1 SINE Alu 2 148 0 9 715 744 164 0 0 chr6 17073093 17073227 -132443810 + GA-rich Low_complexity Low_complexity 2 135 0 9 715 309 303 91 142 chr6 17073278 17073476 -132443561 + B4A SINE B4 85 273 -19 9 715 489 17 0 0 chr6 17073476 17073534 -132443503 + (TC)n Simple_repeat Simple_repeat 2 59 0 9 715 309 303 91 142 chr6 17073534 17073554 -132443483 + B4A SINE B4 274 292 0 9 715 357 198 8 16 chr6 17073554 17073682 -132443355 + (CA)n Simple_repeat Simple_repeat 1 127 0 9 715 2824 45 0 0 chr6 17074320 17074652 -132442385 - IAPEY3_LTR LTR ERVK 0 332 1 9 715 21 0 0 0 chr6 17074797 17074818 -132442219 + AT_rich Low_complexity Low_complexity 1 21 0 1 715 297 0 0 0 chr6 17074857 17074890 -132442147 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 1 715 862 189 89 0 chr6 17074891 17075082 -132441955 - Lx3B LINE L1 -3 6970 6763 1 715 324 294 136 56 chr6 17075210 17075600 -132441437 + Arthur1 DNA Tip100 3427 3847 -100 1 715 2154 159 28 25 chr6 17075907 17076300 -132440737 - ORR1B1 LTR MaLR 0 394 1 1 715 575 39 37 37 chr6 17076710 17076817 -132440220 + (TCTCTG)n Simple_repeat Simple_repeat 2 108 0 1 715 617 308 40 92 chr6 17078080 17078384 -132438653 + B4 SINE B4 1 288 -4 1 715 482 179 0 7 chr6 17078403 17078538 -132438499 + (TA)n Simple_repeat Simple_repeat 1 134 0 1 715 226 376 56 0 chr6 17080293 17080418 -132436619 + L2b LINE L2 3240 3371 -4 1 715 596 259 27 110 chr6 17080664 17080920 -132436117 + MTEa LTR MaLR 109 377 -2 1 715 2315 117 3 0 chr6 17081199 17081525 -132435512 + ORR1A2 LTR MaLR 1 327 0 1 715 634 291 107 30 chr6 17081610 17081908 -132435129 + MTEa LTR MaLR 16 336 -43 1 715 586 293 59 27 chr6 17082139 17082325 -132434712 - B4A SINE B4 -2 290 99 1 715 444 251 106 15 chr6 17082583 17082781 -132434256 - MER57A-int LTR ERV1 -165 6022 5807 1 715 212 170 0 19 chr6 17083756 17083810 -132433227 + GA-rich Low_complexity Low_complexity 2 54 0 1 715 192 268 89 44 chr6 17083878 17083968 -132433069 + L2c LINE L2 3292 3385 -2 1 715 1011 103 7 14 chr6 17084436 17084584 -132432453 + B1_Mus1 SINE Alu 2 148 0 1 715 323 296 117 18 chr6 17084717 17084999 -132432038 + L1ME3A LINE L1 5590 5899 -274 1 715 1056 130 49 33 chr6 17086010 17086193 -132430844 - B2_Mm2 SINE B2 -7 188 3 1 715 1901 48 0 0 chr6 17086221 17086450 -132430587 - L1_Mus1 LINE L1 0 6567 6339 1 715 351 0 0 0 chr6 17086588 17086627 -132430410 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 715 2921 173 38 56 chr6 17087324 17087900 -132429137 + RLTR20D LTR ERVK 1 566 -2 1 715 1541 166 42 42 chr6 17088880 17089188 -132427849 + RMER12 LTR ERVK 1 308 -1014 1 715 719 172 10 25 chr6 17089226 17089389 -132427648 + RMER12 LTR ERVK 447 619 -785 1 715 251 330 139 29 chr6 17089562 17089771 -132427266 - MIR SINE MIR 0 262 31 1 715 432 0 0 0 chr6 17090388 17090436 -132426601 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 715 516 212 0 0 chr6 17090852 17090984 -132426053 + (TA)n Simple_repeat Simple_repeat 2 133 0 1 715 232 287 36 29 chr6 17093645 17093785 -132423252 + (TATATG)n Simple_repeat Simple_repeat 4 144 0 1 715 282 236 72 155 chr6 17094256 17094642 -132422395 + L1M4 LINE L1 3742 4095 -2051 1 715 749 299 77 18 chr6 17095063 17095336 -132421701 + B4 SINE B4 3 291 -1 1 715 443 315 80 32 chr6 17095593 17095842 -132421195 - L2 LINE L2 -905 2514 2254 1 715 808 172 20 0 chr6 17095844 17096050 -132420987 + GA-rich Low_complexity Low_complexity 1 210 0 1 715 402 115 0 0 chr6 17097054 17097115 -132419922 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 715 21 0 0 0 chr6 17097875 17097896 -132419141 + AT_rich Low_complexity Low_complexity 1 21 0 1 715 7777 65 7 2 chr6 17097898 17099630 -132417407 - L1Md_F2 LINE L1 -10 6572 4830 1 715 228 305 120 15 chr6 17099718 17099851 -132417186 + B4 SINE B4 10 156 -136 1 715 502 305 4 7 chr6 17099909 17100053 -132416984 + B4A SINE B4 1 142 -82 1 715 189 0 0 0 chr6 17100075 17100096 -132416941 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 715 261 0 0 0 chr6 17100096 17100124 -132416913 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 715 270 0 0 0 chr6 17100250 17100280 -132416757 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 715 203 388 0 10 chr6 17101391 17101490 -132415547 - L3 LINE CR1 -6 4483 4386 1 715 21 0 0 0 chr6 17102178 17102199 -132414838 + AT_rich Low_complexity Low_complexity 1 21 0 1 715 246 105 0 0 chr6 17102550 17102588 -132414449 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 715 423 0 0 0 chr6 17102588 17102635 -132414402 + (GGA)n Simple_repeat Simple_repeat 2 48 0 1 715 1098 276 88 43 chr6 17102828 17103180 -132413857 - MTD LTR MaLR -15 404 37 1 715 444 153 0 0 chr6 17103679 17103764 -132413273 + L1_Mus3 LINE L1 6548 6632 -6 1 715 698 300 37 77 chr6 17104137 17104437 -132412600 + B4A SINE B4 5 292 0 1 715 22 35 0 0 chr6 17104700 17104729 -132412308 + AT_rich Low_complexity Low_complexity 1 29 0 1 715 1933 209 141 26 chr6 17105274 17105776 -132411261 + RLTR40 LTR ERVK 251 810 -7 1 715 747 233 7 7 chr6 17106131 17106282 -132410755 + B3A SINE B2 1 151 -47 1 715 457 16 32 0 chr6 17106282 17106344 -132410693 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 715 1073 123 0 6 chr6 17106353 17106516 -132410521 - Lx LINE L1 -468 6186 6025 1 715 476 254 42 45 chr6 17106518 17106842 -132410195 + Lx7 LINE L1 7242 7675 -21 1 715 39 22 0 0 chr6 17106842 17106888 -132410149 + AT_rich Low_complexity Low_complexity 1 46 0 1 715 297 28 0 0 chr6 17107805 17107841 -132409196 - L1Md_F3 LINE L1 -722 5862 5827 1 715 6103 31 6 0 chr6 17107841 17108560 -132408477 + L1Md_F3 LINE L1 5847 6569 -15 1 715 379 260 58 0 chr6 17108644 17108748 -132408289 - PB1D10 SINE Alu -7 110 1 1 715 387 0 0 0 chr6 17109368 17109411 -132407626 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 715 2725 95 12 29 chr6 17109441 17109852 -132407185 - Lx LINE L1 -275 6379 5976 1 715 2128 139 47 0 chr6 17109857 17110195 -132406842 + RMER6D LTR ERVK 367 720 0 1 715 583 267 79 34 chr6 17110234 17110614 -132406423 - L1M4c LINE L1 -913 5469 5073 1 715 848 292 110 8 chr6 17110616 17110940 -132406097 - L1M4c LINE L1 -1541 4835 4491 1 715 372 22 0 0 chr6 17110940 17110985 -132406052 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 715 848 292 110 8 chr6 17110985 17111161 -132405876 - L1M4c LINE L1 -1886 4490 4284 1 715 289 366 12 0 chr6 17111162 17111244 -132405793 + ID4 SINE ID 1 83 0 1 715 473 289 86 23 chr6 17111422 17111850 -132405187 + L1M3 LINE L1 3081 3535 -2605 1 715 712 234 19 136 chr6 17111860 17112073 -132404964 - B3A SINE B2 -1 194 7 1 715 396 299 114 32 chr6 17112077 17112516 -132404521 + L1M3 LINE L1 3528 4002 -2138 1 715 2326 113 0 3 chr6 17112536 17112863 -132404174 + ORR1A3 LTR MaLR 1 326 0 1 715 267 280 69 60 chr6 17113188 17113430 -132403607 - L1M4c LINE L1 -3876 2587 2329 1 715 344 267 74 18 chr6 17113529 17113758 -132403279 - L1M4c LINE L1 -4050 2334 2093 1 715 819 112 0 0 chr6 17115149 17115274 -132401763 + (TC)n Simple_repeat Simple_repeat 2 126 0 1 715 330 87 0 0 chr6 17115276 17115322 -132401715 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 715 299 122 0 0 chr6 17116065 17116106 -132400931 + U6 snRNA snRNA 1 41 -66 1 715 186 133 0 0 chr6 17116362 17116392 -132400645 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1 715 281 351 63 0 chr6 17116588 17116699 -132400338 + ID_B1 SINE B4 59 176 -48 1 715 271 330 17 0 chr6 17116709 17116824 -132400213 + GA-rich Low_complexity Low_complexity 3 119 0 1 715 525 16 0 0 chr6 17118119 17118181 -132398856 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 715 382 183 0 21 chr6 17118721 17118808 -132398229 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 1 715 387 0 0 0 chr6 17118808 17118851 -132398186 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 715 382 183 0 21 chr6 17118851 17118858 -132398179 + (TATATG)n Simple_repeat Simple_repeat 3 9 0 1 715 2009 124 3 9 chr6 17118879 17119197 -132397840 - Lx LINE L1 -362 6292 5977 1 715 1607 182 54 6 chr6 17119197 17119401 -132397636 + Lx LINE L1 6315 6535 -119 1 715 189 0 0 0 chr6 17119401 17119422 -132397615 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 1 715 1607 182 54 6 chr6 17119422 17119532 -132397505 + Lx LINE L1 6536 6644 -10 1 715 207 0 0 0 chr6 17119532 17119555 -132397482 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 715 704 303 65 14 chr6 17119581 17119859 -132397178 + B4A SINE B4 1 292 0 1 715 396 191 124 0 chr6 17119983 17120072 -132396965 - B1_Mur1 SINE Alu -12 137 38 1 715 579 29 0 0 chr6 17121179 17121248 -132395789 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 715 450 0 0 0 chr6 17121821 17121871 -132395166 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 715 867 306 20 4 chr6 17122575 17122821 -132394216 + B4A SINE B4 28 277 -15 1 715 1818 222 60 12 chr6 17123542 17123961 -132393076 + Lx5 LINE L1 6602 7040 -10 1 715 715 269 0 14 chr6 17124041 17124184 -132392853 + B3 SINE B2 1 141 -75 1 715 2861 42 0 0 chr6 17125132 17125464 -132391573 - IAPEY3_LTR LTR ERVK 0 332 1 1 715 486 286 38 59 chr6 17125813 17125999 -132391038 + B3A SINE B2 2 183 -15 1 715 182 65 65 0 chr6 17127539 17127570 -132389467 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 1 715 210 37 0 0 chr6 17127595 17127622 -132389415 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 715 435 38 0 0 chr6 17127685 17127738 -132389299 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 715 935 242 41 86 chr6 17130779 17131195 -132385842 - RLTR11B LTR ERVK -27 414 5 1 715 701 336 58 39 chr6 17131199 17131456 -132385581 + B4A SINE B4 24 285 -7 1 715 285 347 60 26 chr6 17131538 17131804 -132385233 - MER46C DNA MER2_type -47 291 17 1 715 405 0 0 0 chr6 17132135 17132180 -132384857 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 715 584 301 36 24 chr6 17132272 17132439 -132384598 + ID_B1 SINE B4 1 169 -55 1 715 327 239 32 54 chr6 17132376 17132469 -132384568 + PB1D10 SINE Alu 23 113 -4 1 715 801 272 75 98 chr6 17132572 17133053 -132383984 - RLTR12B LTR ERVK -42 486 17 1 715 456 336 0 45 chr6 17133052 17133208 -132383829 + B3A SINE B2 48 196 -2 1 715 750 201 87 23 chr6 17133712 17133885 -132383152 - B3A SINE B2 -14 184 1 1 715 464 289 154 64 chr6 17134054 17134288 -132382749 + B4A SINE B4 3 269 -23 1 715 396 55 0 0 chr6 17134288 17134343 -132382694 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 715 257 0 0 29 chr6 17134343 17134376 -132382661 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 715 464 289 154 64 chr6 17134376 17134406 -132382631 + B4A SINE B4 270 291 -1 1 715 435 304 37 0 chr6 17134507 17134642 -132382395 - ID_B1 SINE B4 -3 221 82 2 715 23 33 0 0 chr6 17135508 17135538 -132381499 + AT_rich Low_complexity Low_complexity 1 30 0 2 715 247 315 0 0 chr6 17135650 17135723 -132381314 - MLT2B2 LTR ERVL -442 73 1 2 715 757 114 8 8 chr6 17135922 17136055 -132380982 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 2 715 26 30 0 0 chr6 17136213 17136246 -132380791 + AT_rich Low_complexity Low_complexity 1 33 0 2 715 630 138 0 0 chr6 17136279 17136388 -132380649 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 715 1754 287 57 45 chr6 17137807 17138515 -132378522 + Lx8 LINE L1 6375 7090 -383 2 715 1061 133 0 11 chr6 17138709 17138891 -132378146 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 715 295 272 101 2 chr6 17139602 17139736 -132377301 - MIR SINE MIR -78 190 50 2 715 232 125 42 0 chr6 17139803 17139851 -132377186 + (CTAA)n Simple_repeat Simple_repeat 4 53 0 2 715 3402 30 2 0 chr6 17139851 17140245 -132376792 - MTA_Mm LTR MaLR 0 396 2 2 715 312 94 0 0 chr6 17140245 17140298 -132376739 + (CTAA)n Simple_repeat Simple_repeat 4 56 0 2 715 1304 251 82 33 chr6 17141133 17141942 -132375095 + L1_Mur3 LINE L1 886 1739 -4141 2 715 1150 199 101 41 chr6 17142525 17142792 -132374245 + ORR1D2 LTR MaLR 1 283 -87 2 715 420 20 0 0 chr6 17142792 17142841 -132374196 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 715 295 241 90 22 chr6 17142863 17142952 -132374085 + ORR1D2 LTR MaLR 271 365 -5 2 715 267 330 76 8 chr6 17143100 17143219 -132373818 + MLT1E1 LTR MaLR 117 243 -411 2 715 846 263 34 61 chr6 17143819 17144115 -132372922 + B4A SINE B4 5 292 0 2 715 182 250 11 0 chr6 17144116 17144204 -132372833 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 715 209 346 34 44 chr6 17144940 17145081 -132371956 - MIR SINE MIR -38 230 93 2 715 209 288 16 33 chr6 17145582 17145643 -132371394 - L2b LINE L2 -9 3366 3307 2 715 213 39 0 0 chr6 17146202 17146228 -132370809 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 715 816 251 0 22 chr6 17146294 17146473 -132370564 - B3A SINE B2 -16 182 8 2 715 941 269 54 48 chr6 17146619 17146970 -132370067 - ORR1E LTR MaLR -2 357 5 2 715 192 40 0 0 chr6 17147165 17147190 -132369847 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 715 309 262 94 50 chr6 17148135 17148336 -132368701 + Lx6 LINE L1 7225 7434 -26 2 715 860 53 9 0 chr6 17149572 17149686 -132367351 + (TCC)n Simple_repeat Simple_repeat 2 116 0 2 715 800 324 74 12 chr6 17150824 17151161 -132365876 - MLT1D LTR MaLR -15 490 133 2 715 448 371 23 6 chr6 17151286 17151462 -132365575 - B4A SINE B4 -7 285 107 2 715 266 225 37 26 chr6 17151498 17151595 -132365442 - B4A SINE B4 -191 101 5 2 715 664 89 24 16 chr6 17152181 17152306 -132364731 + (TC)n Simple_repeat Simple_repeat 2 127 0 2 715 261 0 0 0 chr6 17152843 17152872 -132364165 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 2 715 320 64 0 21 chr6 17153056 17153104 -132363933 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 715 311 309 75 56 chr6 17153509 17153670 -132363367 - MIR SINE MIR -91 171 8 2 715 492 153 0 0 chr6 17153678 17153763 -132363274 + T-rich Low_complexity Low_complexity 1 85 0 2 715 1198 62 0 0 chr6 17153764 17153909 -132363128 - B1_Mus1 SINE Alu -2 146 2 2 715 356 330 80 28 chr6 17153970 17154182 -132362855 - MamSINE1 SINE tRNA -58 232 10 2 715 450 320 55 0 chr6 17155523 17155651 -132361386 - ID_B1 SINE B4 -9 215 81 2 715 195 100 0 0 chr6 17156796 17156826 -132360211 + (CAT)n Simple_repeat Simple_repeat 1 30 0 2 715 337 265 117 74 chr6 17157253 17157416 -132359621 - L1M4b LINE L1 -7133 201 32 2 715 524 369 12 0 chr6 17157446 17157614 -132359423 - MLT1H LTR MaLR -337 212 43 2 715 304 305 119 22 chr6 17158662 17158796 -132358241 + MLT1J1 LTR MaLR 3 149 -295 2 715 929 250 19 0 chr6 17158871 17159083 -132357954 - B3 SINE B2 0 216 1 2 715 29 60 0 0 chr6 17159527 17159577 -132357460 + AT_rich Low_complexity Low_complexity 1 50 0 2 715 288 282 0 0 chr6 17160224 17160404 -132356633 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 715 495 0 0 0 chr6 17161284 17161339 -132355698 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 715 239 222 0 0 chr6 17163940 17163985 -132353052 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 715 272 331 35 47 chr6 17165410 17165581 -132351456 - MIR3 SINE MIR -35 173 5 2 715 289 282 54 18 chr6 17165721 17165833 -132351204 + PB1D10 SINE Alu 1 116 -1 2 715 1581 281 110 21 chr6 17167026 17167769 -132349268 - Lx7 LINE L1 -5 7468 6635 2 715 261 0 0 0 chr6 17168252 17168281 -132348756 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 2 715 450 233 25 88 chr6 17169388 17169548 -132347489 + MTEb LTR MaLR 230 379 0 2 715 183 129 0 0 chr6 17169777 17169808 -132347229 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 2 89 4018 199 43 17 chr6 17169834 17170699 -132346338 + Lx6 LINE L1 5975 6861 -599 2 716 656 24 12 0 chr6 17170718 17170800 -132346237 + (GA)n Simple_repeat Simple_repeat 2 84 0 2 716 232 277 0 30 chr6 17170819 17170886 -132346151 + Tigger7 DNA MER2_type 1159 1223 -1268 2 716 578 304 0 0 chr6 17170891 17171029 -132346008 + Lx6 LINE L1 6986 7123 -337 2 716 318 221 0 0 chr6 17171030 17171161 -132345876 + (TA)n Simple_repeat Simple_repeat 2 132 0 2 716 928 269 67 32 chr6 17171164 17171479 -132345558 + Lx6 LINE L1 7119 7444 -16 2 716 1071 273 33 44 chr6 17171624 17171943 -132345094 + MTE2b LTR MaLR 54 380 -39 2 716 776 263 211 22 chr6 17171942 17172340 -132344697 - RMER5 LTR ERV1 -5 529 57 2 716 1365 289 77 19 chr6 17172340 17172908 -132344129 - Lx6 LINE L1 -2 7458 6483 2 716 3047 222 47 8 chr6 17172908 17174075 -132342962 + Lx5 LINE L1 5333 6791 -669 2 716 266 261 219 42 chr6 17175370 17175466 -132341571 + PB1D7 SINE Alu 7 119 -1 2 716 322 360 80 7 chr6 17175521 17175658 -132341379 + B4 SINE B4 96 242 -50 2 716 228 35 0 0 chr6 17175718 17175747 -132341290 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 716 474 18 0 0 chr6 17175747 17175801 -132341236 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 716 221 230 10 0 chr6 17175829 17175929 -132341108 + (CA)n Simple_repeat Simple_repeat 1 101 0 2 716 369 75 0 19 chr6 17175953 17176007 -132341030 + HAL1-3A_ME LINE L1 1975 2027 -831 2 716 230 169 0 15 chr6 17176013 17176079 -132340958 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 716 656 126 0 0 chr6 17176461 17176556 -132340481 + RMER6D LTR ERVK 1 95 -625 2 716 2509 227 65 98 chr6 17176561 17178073 -132338964 + RMER13A LTR ERVK 1 814 -46 2 716 7323 93 9 8 chr6 17178139 17179660 -132337377 - L1_Mus3 LINE L1 -12 6626 5111 2 716 185 59 59 0 chr6 17179898 17179932 -132337105 + (TATAA)n Simple_repeat Simple_repeat 2 37 0 2 716 265 330 0 30 chr6 17180598 17180698 -132336339 + (TCTCTG)n Simple_repeat Simple_repeat 4 100 0 2 716 21 0 0 0 chr6 17181447 17181468 -132335569 + AT_rich Low_complexity Low_complexity 1 21 0 2 716 2119 248 78 55 chr6 17181760 17182554 -132334483 - RMER1C Other Other -1 1341 530 2 716 241 371 0 0 chr6 17182725 17182814 -132334223 - RMER1B Other Other -936 130 42 2 716 897 93 10 14 chr6 17183371 17183578 -132333459 + (TCTA)n Simple_repeat Simple_repeat 1 205 0 2 716 315 247 0 0 chr6 17183886 17183975 -132333062 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 716 189 276 16 49 chr6 17184045 17184106 -132332931 + L2b LINE L2 3252 3310 -65 2 716 2973 49 47 84 chr6 17184295 17184761 -132332276 - L1_Mus2 LINE L1 -463 6103 5655 2 716 3247 63 7 45 chr6 17184761 17185207 -132331830 + L1_Mus2 LINE L1 6136 6564 -2 2 716 39 22 0 0 chr6 17185405 17185451 -132331586 + AT_rich Low_complexity Low_complexity 1 46 0 2 716 226 277 0 15 chr6 17185718 17185784 -132331253 + L2c LINE L2 3071 3135 -252 2 716 405 131 0 0 chr6 17187966 17188050 -132328987 + (TC)n Simple_repeat Simple_repeat 1 84 0 2 716 456 261 33 165 chr6 17188050 17188293 -132328744 + ORR1D1 LTR MaLR 164 374 0 2 716 429 308 28 97 chr6 17188339 17188587 -132328450 + MIR SINE MIR 1 231 -31 2 716 543 285 80 24 chr6 17188817 17189029 -132328008 + Lx8 LINE L1 7163 7386 -87 2 716 21 36 0 0 chr6 17189769 17189797 -132327240 + AT_rich Low_complexity Low_complexity 1 28 0 2 716 1332 259 36 43 chr6 17189797 17190213 -132326824 - Lx8 LINE L1 -2 7471 7059 2 716 1112 69 7 0 chr6 17190213 17190358 -132326679 + B1_Mm SINE Alu 1 146 -1 2 716 258 314 29 10 chr6 17190384 17190487 -132326550 - Lx7 LINE L1 -638 7058 6954 2 716 1378 84 16 0 chr6 17190506 17190697 -132326340 + B2_Mm2 SINE B2 1 194 -1 2 716 499 254 96 7 chr6 17191425 17191560 -132325477 + RSINE1 SINE B4 3 149 -16 2 716 21 36 0 0 chr6 17191569 17191597 -132325440 + AT_rich Low_complexity Low_complexity 1 28 0 2 716 614 271 52 37 chr6 17191690 17191884 -132325153 - B3A SINE B2 0 216 21 2 716 1824 50 4 0 chr6 17191925 17192163 -132324874 - L1_Mus1 LINE L1 -402 6165 5927 2 716 3119 45 0 0 chr6 17192163 17192540 -132324497 + L1_Mus1 LINE L1 6191 6567 0 2 716 221 315 8 3 chr6 17192549 17192661 -132324376 - MIRm SINE MIR -15 193 78 2 716 207 0 0 0 chr6 17192781 17192804 -132324233 + (A)n Simple_repeat Simple_repeat 1 23 0 2 716 247 312 0 48 chr6 17192915 17192999 -132324038 - ID4 SINE ID -2 81 2 2 716 486 162 47 29 chr6 17193079 17193647 -132323390 + (TG)n Simple_repeat Simple_repeat 1 578 0 2 716 437 177 31 28 chr6 17193660 17193951 -132323086 + (TATG)n Simple_repeat Simple_repeat 1 291 0 2 716 387 284 18 18 chr6 17193952 17194063 -132322974 - B1F SINE Alu -3 146 36 2 716 280 41 0 58 chr6 17194851 17194903 -132322134 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 3 716 2584 276 61 80 chr6 17194905 17195999 -132321038 - Lx5 LINE L1 -121 6929 5857 3 716 2747 296 100 26 chr6 17196316 17197527 -132319510 + Lx7 LINE L1 6061 7361 -335 3 716 24 0 0 0 chr6 17197675 17197699 -132319338 + AT_rich Low_complexity Low_complexity 1 24 0 3 716 303 356 60 24 chr6 17198442 17198609 -132318428 + MIRb SINE MIR 67 239 -29 3 716 463 33 30 90 chr6 17199379 17199513 -132317524 + A-rich Low_complexity Low_complexity 2 127 0 3 716 693 118 0 0 chr6 17199792 17199902 -132317135 + (GGGA)n Simple_repeat Simple_repeat 1 110 0 3 716 22 0 0 0 chr6 17200594 17200616 -132316421 + AT_rich Low_complexity Low_complexity 1 22 0 3 716 609 341 71 54 chr6 17200701 17201054 -132315983 - ORR1E LTR MaLR 0 359 1 3 716 547 344 15 15 chr6 17201143 17201417 -132315620 + B4A SINE B4 1 274 -18 3 716 418 298 76 40 chr6 17201433 17201709 -132315328 + L1MB2 LINE L1 5876 6161 -10 3 716 486 0 0 0 chr6 17202503 17202557 -132314480 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 716 267 258 141 61 chr6 17202703 17202802 -132314235 + PB1D10 SINE Alu 10 116 -1 3 716 300 232 0 0 chr6 17203139 17203264 -132313773 + CT-rich Low_complexity Low_complexity 2 126 0 3 716 194 190 0 37 chr6 17203315 17203397 -132313640 + CT-rich Low_complexity Low_complexity 2 80 0 3 716 709 266 56 185 chr6 17204605 17205033 -132312004 + MTE2a LTR MaLR 1 373 -6 3 716 2972 75 32 0 chr6 17205377 17205788 -132311249 + L1_Mus3 LINE L1 6215 6638 0 3 716 624 200 9 9 chr6 17205942 17206053 -132310984 - B1_Mur1 SINE Alu -1 148 38 3 716 27 0 0 0 chr6 17206954 17206981 -132310056 + AT_rich Low_complexity Low_complexity 1 27 0 3 716 513 328 58 122 chr6 17206991 17207244 -132309793 + MTEa LTR MaLR 2 225 -154 3 716 747 32 0 0 chr6 17207244 17207338 -132309699 + (TG)n Simple_repeat Simple_repeat 2 95 0 3 716 513 328 58 122 chr6 17207338 17207484 -132309553 + MTEa LTR MaLR 226 375 -4 3 716 573 243 35 7 chr6 17207657 17207798 -132309239 - B1_Mus1 SINE Alu -3 145 1 3 716 414 0 0 0 chr6 17209966 17210012 -132307025 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 716 881 172 0 0 chr6 17210012 17210163 -132306874 - ORR1D1 LTR MaLR -223 151 1 3 716 431 335 132 30 chr6 17210443 17210708 -132306329 + B4A SINE B4 1 292 0 3 716 686 181 29 96 chr6 17210831 17210980 -132306057 + ORR1C1 LTR MaLR 3 137 -241 3 716 331 274 94 8 chr6 17210981 17211209 -132305828 + L1MD LINE L1 4104 4346 -1800 3 716 349 192 44 37 chr6 17211276 17211401 -132305636 + ORR1C1 LTR MaLR 152 345 -49 3 716 700 210 22 7 chr6 17211403 17211542 -132305495 + B1_Mur4 SINE Alu 2 142 -8 3 716 299 306 58 71 chr6 17211412 17211543 -132305494 + B4A SINE B4 94 219 -73 3 716 339 136 0 0 chr6 17211543 17211602 -132305435 + (ATG)n Simple_repeat Simple_repeat 2 60 0 3 716 299 306 58 71 chr6 17211602 17211625 -132305412 + B4A SINE B4 220 246 -46 3 716 250 216 20 0 chr6 17211654 17211705 -132305332 + ORR1C1 LTR MaLR 327 378 0 3 716 355 287 132 38 chr6 17211853 17212270 -132304767 + L1M5 LINE L1 5336 5791 -653 3 716 427 324 10 0 chr6 17212383 17212485 -132304552 + RSINE1 SINE B4 2 104 -61 3 716 282 106 0 0 chr6 17212485 17212532 -132304505 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 716 231 88 0 0 chr6 17212549 17212583 -132304454 + (TAA)n Simple_repeat Simple_repeat 1 34 0 3 716 471 261 162 16 chr6 17213371 17213562 -132303475 - RMER21A LTR ERV1 -263 684 466 3 716 21 36 0 0 chr6 17214216 17214244 -132302793 + AT_rich Low_complexity Low_complexity 1 28 0 3 716 210 91 0 0 chr6 17214260 17214293 -132302744 + (T)n Simple_repeat Simple_repeat 1 33 0 3 716 315 311 44 62 chr6 17214925 17214946 -132302091 + B1F SINE Alu 32 80 -69 3 716 325 191 88 0 chr6 17214946 17215014 -132302023 + ID_B1 SINE B4 130 203 -21 3 716 315 311 44 62 chr6 17215014 17215038 -132301999 + B1F SINE Alu 81 142 -7 3 716 523 270 114 33 chr6 17215267 17215478 -132301559 + B4 SINE B4 2 229 -63 3 716 623 13 13 0 chr6 17215480 17215556 -132301481 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 716 370 162 33 39 chr6 17215574 17215754 -132301283 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 3 716 605 284 66 25 chr6 17216871 17217012 -132300025 - Lx8 LINE L1 -1137 6336 6196 3 716 318 50 0 0 chr6 17217012 17217052 -132299985 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 3 716 605 284 66 25 chr6 17217052 17217152 -132299885 - Lx8 LINE L1 -1278 6195 6085 3 716 568 247 42 79 chr6 17217491 17217745 -132299292 - Lx8 LINE L1 -362 5929 5691 3 716 293 270 79 10 chr6 17217726 17217827 -132299210 + Lx8 LINE L1 6381 6488 -985 3 716 956 251 137 58 chr6 17217882 17218351 -132298686 + Lx8 LINE L1 6894 7399 -74 3 716 340 202 92 5 chr6 17218487 17218589 -132298448 + B1F SINE Alu 31 147 -2 3 716 341 303 141 59 chr6 17218818 17219074 -132297963 - Charlie2b DNA MER1_type -37 2745 2469 3 716 261 83 0 0 chr6 17219119 17219155 -132297882 + (TTG)n Simple_repeat Simple_repeat 1 36 0 3 716 229 305 158 0 chr6 17219156 17219238 -132297799 - PB1D7 SINE Alu -13 107 13 3 716 393 291 63 0 chr6 17219911 17220069 -132296968 + L1MB8 LINE L1 5887 6054 -124 3 716 26 0 0 0 chr6 17221071 17221097 -132295940 + AT_rich Low_complexity Low_complexity 1 26 0 3 716 1048 103 0 0 chr6 17221109 17221255 -132295782 + B1_Mus1 SINE Alu 1 146 -2 3 716 454 346 77 47 chr6 17221382 17221809 -132295228 + L1ME2 LINE L1 5723 6162 -2 3 716 252 0 0 0 chr6 17222104 17222132 -132294905 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 716 181 146 42 0 chr6 17222598 17222646 -132294391 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 3 716 997 194 112 19 chr6 17222790 17222995 -132294042 + URR1A DNA MER1_type 3 226 0 3 716 719 234 14 7 chr6 17223184 17223326 -132293711 + B1_Mur3 SINE Alu 1 143 -6 3 716 230 281 111 11 chr6 17225604 17225694 -132291343 + MTE2b LTR MaLR 1 99 -280 3 716 1125 231 97 14 chr6 17225694 17225984 -132291053 + MTE2b LTR MaLR 59 372 -7 3 716 641 332 43 4 chr6 17226001 17226234 -132290803 + B4A SINE B4 31 272 -20 3 716 339 25 0 0 chr6 17226327 17226367 -132290670 + (CTA)n Simple_repeat Simple_repeat 2 41 0 3 716 43 20 0 0 chr6 17226577 17226627 -132290410 + AT_rich Low_complexity Low_complexity 1 50 0 3 716 318 50 0 0 chr6 17227047 17227087 -132289950 + (T)n Simple_repeat Simple_repeat 1 40 0 3 716 1202 43 7 0 chr6 17227091 17227230 -132289807 - B1_Mus2 SINE Alu -7 140 1 3 716 180 0 0 0 chr6 17227466 17227486 -132289551 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 716 333 186 0 0 chr6 17227664 17227734 -132289303 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 716 24 32 0 0 chr6 17228242 17228273 -132288764 + AT_rich Low_complexity Low_complexity 1 31 0 3 716 739 267 47 5 chr6 17228481 17228673 -132288364 + MER20 DNA MER1_type 19 218 -1 3 716 304 272 14 49 chr6 17231171 17231314 -132285723 + (CGGGG)n Simple_repeat Simple_repeat 5 142 0 3 716 1194 81 0 39 chr6 17233550 17233704 -132283333 + B1_Mus1 SINE Alu 1 148 0 3 716 183 26 0 93 chr6 17233710 17233753 -132283284 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 3 716 306 0 0 0 chr6 17234304 17234338 -132282699 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 716 395 215 0 51 chr6 17234517 17234615 -132282422 - PB1 SINE Alu 0 127 35 3 716 1277 48 0 0 chr6 17235916 17236061 -132280976 + B1_Mus2 SINE Alu 2 146 -1 3 716 32 26 0 0 chr6 17238767 17238806 -132278231 + AT_rich Low_complexity Low_complexity 1 39 0 3 716 581 336 67 26 chr6 17239160 17239429 -132277608 + B4A SINE B4 3 282 -10 3 716 214 319 99 16 chr6 17239971 17240118 -132276919 + MIRm SINE MIR 2 162 -114 3 716 180 176 0 0 chr6 17240189 17240223 -132276814 + (TAA)n Simple_repeat Simple_repeat 1 34 0 3 716 378 173 0 0 chr6 17240223 17240298 -132276739 + GA-rich Low_complexity Low_complexity 2 76 0 3 716 389 310 49 35 chr6 17240531 17240731 -132276306 + ORR1E LTR MaLR 1 202 -182 3 716 573 191 0 0 chr6 17241250 17241365 -132275672 + CT-rich Low_complexity Low_complexity 3 117 0 3 716 1209 76 0 0 chr6 17241367 17241511 -132275526 - B1_Mus2 SINE Alu 0 147 4 3 716 711 266 97 32 chr6 17241733 17242026 -132275011 - ORR1E LTR MaLR 0 379 41 3 716 220 329 59 0 chr6 17243872 17243957 -132273080 - MIR SINE MIR -90 172 83 3 716 743 212 7 33 chr6 17244698 17244849 -132272188 - B1_Mur2 SINE Alu -2 147 1 3 716 676 304 6 19 chr6 17245038 17245199 -132271838 - B3 SINE B2 -1 215 57 3 716 489 92 0 0 chr6 17245600 17245676 -132271361 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 716 238 257 237 37 chr6 17246232 17246422 -132270615 + RMER15 LTR ERVL 330 557 -18 3 716 558 244 31 53 chr6 17246561 17246748 -132270289 + B3A SINE B2 1 184 -11 3 716 1210 55 0 27 chr6 17246864 17247000 -132270037 + B1_Mus2 SINE Alu 2 137 -10 3 716 210 37 0 0 chr6 17247000 17247027 -132270010 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 716 1210 55 0 27 chr6 17247027 17247040 -132269997 + B1_Mus2 SINE Alu 138 147 0 3 716 941 184 125 20 chr6 17247322 17247522 -132269515 - URR1B DNA MER1_type -4 221 1 3 716 321 274 48 19 chr6 17247926 17248030 -132269007 - MER5A1 DNA MER1_type 0 166 60 3 716 345 93 0 0 chr6 17248389 17248443 -132268594 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 716 378 169 14 0 chr6 17249762 17249833 -132267204 - ORR1A4 LTR MaLR -257 72 1 3 716 1709 154 8 39 chr6 17250130 17250499 -132266538 + ORR1A4 LTR MaLR 29 394 0 3 716 590 212 62 0 chr6 17250556 17250669 -132266368 - PB1D9 SINE Alu 0 120 1 3 716 258 95 0 0 chr6 17251063 17251105 -132265932 + (A)n Simple_repeat Simple_repeat 1 42 0 3 716 229 280 71 107 chr6 17251608 17251748 -132265289 - MLT1A0 LTR MaLR -180 185 51 3 716 236 302 105 30 chr6 17251904 17252037 -132265000 + MamGypLTR1d LTR Gypsy 611 753 -60 3 716 2140 162 71 6 chr6 17252203 17252557 -132264480 + ORR1C1 LTR MaLR 2 378 0 3 716 195 42 0 0 chr6 17252820 17252844 -132264193 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 3 716 376 212 67 45 chr6 17252863 17252952 -132264085 + ID_B1 SINE B4 80 170 -54 4 716 591 15 0 0 chr6 17252966 17253034 -132264003 + (GAA)n Simple_repeat Simple_repeat 1 68 0 4 716 495 0 0 0 chr6 17253309 17253364 -132263673 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 716 186 43 0 0 chr6 17253431 17253454 -132263583 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 716 651 218 137 46 chr6 17253471 17253668 -132263369 - B3 SINE B2 0 216 2 4 716 69 33 0 0 chr6 17254993 17255083 -132261954 + AT_rich Low_complexity Low_complexity 1 90 0 4 716 212 0 36 0 chr6 17255510 17255538 -132261499 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 716 373 188 39 118 chr6 17255586 17255713 -132261324 + BC1_Mm scRNA scRNA 7 123 -29 4 716 24 0 0 0 chr6 17255855 17255879 -132261158 + AT_rich Low_complexity Low_complexity 1 24 0 4 716 540 0 0 0 chr6 17256794 17256854 -132260183 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 716 188 67 0 32 chr6 17258485 17258516 -132258521 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 716 315 0 0 0 chr6 17260532 17260567 -132256470 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 716 180 77 0 0 chr6 17260676 17260702 -132256335 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 716 2137 201 99 6 chr6 17261136 17261641 -132255396 - Lx9 LINE L1 0 7644 7093 4 716 790 327 11 14 chr6 17261920 17262239 -132254798 + MER47B DNA MER2_type 1 381 -37 4 716 216 181 13 53 chr6 17263091 17263167 -132253870 + (TTATA)n Simple_repeat Simple_repeat 1 73 0 4 716 209 382 26 0 chr6 17264153 17264229 -132252808 + MER5B DNA MER1_type 25 102 -76 4 716 229 278 102 10 chr6 17264560 17264658 -132252379 + MER94 DNA AcHobo 17 123 -11 4 716 1637 43 5 0 chr6 17265350 17265534 -132251503 - B2_Mm1t SINE B2 -7 186 2 4 716 609 110 0 0 chr6 17267960 17268051 -132248986 + (TC)n Simple_repeat Simple_repeat 1 91 0 4 716 225 0 0 0 chr6 17268340 17268365 -132248672 + (A)n Simple_repeat Simple_repeat 1 25 0 4 716 315 0 0 0 chr6 17268826 17268861 -132248176 + (CTAA)n Simple_repeat Simple_repeat 3 37 0 4 716 540 0 0 0 chr6 17270069 17270129 -132246908 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 716 423 0 0 0 chr6 17270207 17270254 -132246783 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 716 697 252 0 20 chr6 17271499 17271645 -132245392 - B1_Mur2 SINE Alu -6 143 1 4 716 730 260 6 12 chr6 17272676 17272847 -132244190 + ORR1D1 LTR MaLR 12 181 -193 4 716 432 130 0 0 chr6 17272847 17272916 -132244121 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 716 280 23 0 64 chr6 17272971 17273018 -132244019 + (CCCCCT)n Simple_repeat Simple_repeat 2 45 0 4 716 695 255 43 39 chr6 17273039 17273247 -132243790 + ORR1D1 LTR MaLR 166 374 0 4 716 357 82 0 0 chr6 17273348 17273397 -132243640 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 716 653 275 77 26 chr6 17274010 17274204 -132242833 + MER20 DNA MER1_type 1 204 -15 4 716 3208 80 39 16 chr6 17274530 17274963 -132242074 - Lx LINE L1 -5 6649 6207 4 716 510 350 43 28 chr6 17275731 17276013 -132241024 - MLT1C LTR MaLR -27 440 155 4 716 181 284 125 89 chr6 17276801 17276913 -132240124 + MER5A DNA MER1_type 74 189 0 4 716 26 30 0 0 chr6 17277726 17277759 -132239278 + AT_rich Low_complexity Low_complexity 1 33 0 4 716 409 343 22 11 chr6 17278095 17278275 -132238762 + B3A SINE B2 1 182 -16 4 716 403 293 0 0 chr6 17278281 17278380 -132238657 + PB1D10 SINE Alu 18 116 -1 4 716 568 301 154 4 chr6 17278570 17278797 -132238240 - MT2A LTR ERVL -4 529 269 4 716 796 332 139 32 chr6 17279294 17279792 -132237245 - MLT1F2 LTR MaLR 0 560 10 4 716 651 343 0 11 chr6 17280266 17280446 -132236591 + B3A SINE B2 1 178 -20 4 716 363 23 0 0 chr6 17280464 17280508 -132236529 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 716 309 374 43 37 chr6 17280544 17280708 -132236329 - MLT1L LTR MaLR -335 275 111 4 716 11830 81 8 6 chr6 17282071 17284518 -132232519 + L1_Mus1 LINE L1 4115 6567 0 4 716 277 250 12 50 chr6 17284708 17284788 -132232249 + B4A SINE B4 3 79 -213 4 716 217 282 132 28 chr6 17285419 17285525 -132231512 + MIR SINE MIR 58 174 -88 4 716 699 159 94 2 chr6 17285883 17286088 -132230949 - Lx2B LINE L1 -128 6872 6759 4 716 381 43 0 0 chr6 17286119 17286166 -132230871 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 4 716 222 37 0 0 chr6 17286469 17286496 -132230541 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 716 396 0 0 0 chr6 17287075 17287119 -132229918 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 716 351 357 21 75 chr6 17287121 17287360 -132229677 - B4 SINE B4 -27 265 40 4 716 387 0 0 0 chr6 17287391 17287434 -132229603 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 716 206 303 118 63 chr6 17288880 17289007 -132228030 - MER5A DNA MER1_type -28 161 28 4 716 275 191 14 14 chr6 17291332 17291401 -132225636 + (TATG)n Simple_repeat Simple_repeat 2 70 0 4 716 21 0 0 0 chr6 17291426 17291447 -132225590 + AT_rich Low_complexity Low_complexity 1 21 0 4 716 224 260 0 19 chr6 17291706 17291723 -132225314 + polypurine Low_complexity Low_complexity 3 19 0 4 716 1123 78 0 0 chr6 17291723 17291865 -132225172 + B1_Mm SINE Alu 4 145 -2 4 716 224 260 0 19 chr6 17291865 17291953 -132225084 + GA-rich Low_complexity Low_complexity 20 105 0 4 716 984 288 104 20 chr6 17292000 17292347 -132224690 - MLT2B4 LTR ERVL -180 376 1 4 716 4516 76 0 16 chr6 17292358 17292973 -132224064 + L1Md_F2 LINE L1 5978 6582 0 4 716 342 345 64 28 chr6 17294241 17294446 -132222591 - MIRb SINE MIR -32 236 15 4 716 237 33 0 0 chr6 17294708 17294738 -132222299 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 4 716 461 132 11 57 chr6 17294747 17294835 -132222202 - BC1_Mm scRNA scRNA -68 84 1 4 716 352 167 278 10 chr6 17294820 17294917 -132222120 + B1_Mus1 SINE Alu 19 141 -7 4 716 738 0 0 0 chr6 17294920 17295002 -132222035 + (GA)n Simple_repeat Simple_repeat 1 82 0 4 716 810 169 184 5 chr6 17295055 17295245 -132221792 + URR1B DNA MER1_type 1 224 -1 4 716 381 137 82 31 chr6 17295786 17295884 -132221153 - Lx9 LINE L1 0 7644 7542 4 716 360 0 0 0 chr6 17295922 17295962 -132221075 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 716 449 281 65 70 chr6 17296014 17296454 -132220583 + RMER20B LTR ERVK 30 516 -111 4 716 689 168 22 0 chr6 17296471 17296608 -132220429 - Lx9 LINE L1 -202 7442 7303 4 716 232 148 33 0 chr6 17296707 17296768 -132220269 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 4 716 582 15 0 0 chr6 17297048 17297115 -132219922 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 716 342 0 0 0 chr6 17297115 17297152 -132219885 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 716 238 374 56 14 chr6 17297176 17297426 -132219611 + L2b LINE L2 2848 3099 -276 4 716 1034 228 5 0 chr6 17297831 17298033 -132219004 + B3 SINE B2 3 205 -11 4 716 701 193 43 43 chr6 17298927 17299068 -132217969 + B1_Mus1 SINE Alu 2 142 -6 4 716 4044 64 4 0 chr6 17299261 17299774 -132217263 + L1_Mus2 LINE L1 6051 6565 -1 4 716 423 56 0 0 chr6 17300503 17300557 -132216480 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 716 355 331 98 15 chr6 17300562 17300694 -132216343 - B3A SINE B2 -43 155 13 4 717 218 98 49 0 chr6 17303384 17303425 -132213612 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 4 717 281 388 28 69 chr6 17303611 17303827 -132213210 + MamGypLTR1b LTR Gypsy 203 409 -375 4 717 316 331 99 12 chr6 17303934 17304096 -132212941 + MamGypLTR1b LTR Gypsy 605 780 -2 4 717 419 331 8 0 chr6 17304735 17304868 -132212169 - LTR82B Low_complexity ERVL -477 353 220 4 717 1134 124 0 0 chr6 17304994 17305266 -132211771 + (CA)n Simple_repeat Simple_repeat 1 272 0 4 717 1095 98 0 0 chr6 17305277 17305602 -132211435 + (CA)n Simple_repeat Simple_repeat 1 325 0 4 717 824 239 114 51 chr6 17306491 17306899 -132210138 - L1MB3 LINE L1 -2 6181 5752 4 717 237 108 0 0 chr6 17306899 17306936 -132210101 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 4 717 824 239 114 51 chr6 17306936 17306981 -132210056 - L1MB3 LINE L1 -432 5751 5700 4 717 883 282 7 7 chr6 17306980 17307251 -132209786 + Lx7 LINE L1 7096 7366 -330 4 717 240 186 0 0 chr6 17307258 17307317 -132209720 + T-rich Low_complexity Low_complexity 1 59 0 4 717 3460 85 13 4 chr6 17308004 17308475 -132208562 + MT2C_Mm LTR ERVL 1 475 0 4 717 259 348 0 22 chr6 17308672 17308763 -132208274 + CT-rich Low_complexity Low_complexity 1 89 0 4 717 1975 262 68 21 chr6 17309505 17310584 -132206453 - Lx5 LINE L1 -56 7404 6059 4 717 422 181 0 0 chr6 17310983 17311077 -132205960 - L1Md_F2 LINE L1 -1 6581 6488 4 717 342 45 0 0 chr6 17311560 17311604 -132205433 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 717 288 0 0 0 chr6 17311604 17311635 -132205402 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 717 21 36 0 0 chr6 17311694 17311722 -132205315 + AT_rich Low_complexity Low_complexity 1 28 0 4 717 339 246 104 9 chr6 17312410 17312525 -132204512 - MER3 DNA MER1_type -8 201 76 4 717 213 307 92 30 chr6 17312674 17312805 -132204232 - MIRc SINE MIR -124 144 6 4 717 222 37 0 0 chr6 17312861 17312888 -132204149 + (TAA)n Simple_repeat Simple_repeat 2 28 0 4 717 423 0 0 0 chr6 17314295 17314342 -132202695 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 717 417 274 45 52 chr6 17314935 17315089 -132201948 - MLT1A LTR MaLR -49 325 173 4 717 226 194 30 0 chr6 17315105 17315172 -132201865 + CT-rich Low_complexity Low_complexity 2 70 0 4 717 1359 268 75 107 chr6 17315428 17315671 -132201366 - Lx8 LINE L1 -28 7445 7252 4 717 908 156 7 0 chr6 17315671 17315812 -132201225 - B1_Mur3 SINE Alu -7 142 1 4 717 1359 268 75 107 chr6 17315812 17316270 -132200767 - Lx8 LINE L1 -222 7251 6766 4 717 327 154 6 16 chr6 17316280 17316347 -132200690 + L1_Rod LINE L1 5128 5249 -894 5 717 269 310 11 44 chr6 17316448 17316539 -132200498 - MER63D DNA AcHobo -694 367 280 5 717 541 256 40 35 chr6 17316595 17316827 -132200210 - MTD LTR MaLR -4 403 139 5 717 27407 23 0 0 chr6 17316827 17320189 -132196848 + L1Md_T LINE L1 2225 5586 -297 5 717 8615 26 0 0 chr6 17320189 17321185 -132195852 + L1Md_T LINE L1 5587 6582 0 5 717 1096 233 29 16 chr6 17321190 17321434 -132195603 - MTD LTR MaLR -147 272 26 5 717 312 27 0 0 chr6 17321986 17322023 -132195014 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 717 230 286 137 39 chr6 17323051 17323153 -132193884 - MIRb SINE MIR -122 146 35 5 717 1323 170 0 4 chr6 17323365 17323590 -132193447 + URR1B DNA MER1_type 1 224 -1 5 717 21 0 0 0 chr6 17324044 17324065 -132192972 + AT_rich Low_complexity Low_complexity 1 21 0 5 717 1028 253 28 8 chr6 17324298 17324553 -132192484 + MER2 DNA MER2_type 85 344 -1 5 717 3266 41 13 0 chr6 17324753 17325144 -132191893 - MTA_Mm LTR MaLR 0 396 1 5 717 300 349 53 101 chr6 17325194 17325401 -132191636 + MLT1G LTR MaLR 251 447 -144 5 717 240 98 78 0 chr6 17326099 17326150 -132190887 - URR1B DNA MER1_type -60 165 111 5 717 246 32 0 0 chr6 17326180 17326211 -132190826 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 717 216 0 0 0 chr6 17326260 17326284 -132190753 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 717 183 146 0 0 chr6 17326418 17326459 -132190578 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 5 717 862 309 87 63 chr6 17326999 17327396 -132189641 + MLT2D LTR ERVL 4 551 -8 5 717 446 235 137 17 chr6 17329723 17329840 -132187197 + RSINE1 SINE B4 2 132 -33 5 717 402 21 0 0 chr6 17329845 17329892 -132187145 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 717 584 74 11 0 chr6 17329892 17329986 -132187051 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 5 717 586 291 54 65 chr6 17330191 17330470 -132186567 + RMER15 LTR ERVL 276 551 -24 5 717 434 375 112 82 chr6 17330499 17330900 -132186137 + MER21B LTR ERV1 28 440 -423 5 717 490 281 0 24 chr6 17330891 17331015 -132186022 + MTE-int LTR MaLR 1354 1474 -106 5 717 695 279 180 4 chr6 17331145 17331390 -132185647 + B4 SINE B4 1 288 -4 5 717 492 307 92 15 chr6 17331494 17331765 -132185272 + MTEa LTR MaLR 88 379 0 5 717 483 335 69 66 chr6 17331773 17332108 -132184929 + MER21B LTR ERV1 446 781 -82 5 717 423 0 0 0 chr6 17332325 17332372 -132184665 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 717 878 301 26 4 chr6 17333817 17334087 -132182950 + B4A SINE B4 1 276 -16 5 717 275 242 10 0 chr6 17334124 17334223 -132182814 + (CA)n Simple_repeat Simple_repeat 2 101 0 5 717 215 152 22 0 chr6 17334758 17334804 -132182233 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 717 429 20 0 0 chr6 17336863 17336913 -132180124 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 717 969 215 56 5 chr6 17337303 17337499 -132179538 + B3 SINE B2 4 209 -7 5 717 210 186 23 0 chr6 17337913 17337956 -132179081 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 717 674 165 0 4 chr6 17339133 17339381 -132177656 + GA-rich Low_complexity Low_complexity 1 246 0 5 717 868 250 56 43 chr6 17339593 17339827 -132177210 - MTE2a LTR MaLR -2 377 141 5 717 531 330 0 0 chr6 17339827 17340093 -132176944 + (TG)n Simple_repeat Simple_repeat 1 266 0 5 717 298 321 121 35 chr6 17340100 17340216 -132176821 - RSINE1 SINE B4 0 165 40 5 717 180 0 0 0 chr6 17340856 17340876 -132176161 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 717 4644 133 3 60 chr6 17341063 17341700 -132175337 + L1Md_F3 LINE L1 481 1118 -5606 5 717 3510 20 2 0 chr6 17341700 17342095 -132174942 + MTA_Mm LTR MaLR 1 396 0 5 717 8976 42 4 1 chr6 17342098 17343190 -132173847 + MTA_Mm-int LTR MaLR 4 1098 0 5 717 3490 23 2 0 chr6 17343190 17343585 -132173452 + MTA_Mm LTR MaLR 1 396 0 5 717 11705 71 2 17 chr6 17343585 17344295 -132172742 + L1Md_F3 LINE L1 1119 1781 -4102 5 717 2917 54 8 0 chr6 17344295 17344649 -132172388 + IAPEY2_LTR LTR ERVK 1 357 0 5 717 11705 57 1 7 chr6 17344649 17345716 -132171321 + L1Md_F3 LINE L1 1782 2839 -3044 5 717 10560 52 0 13 chr6 17345714 17346329 -132170708 + L1Md_F3 LINE L1 4495 5107 -776 5 717 1711 16 0 0 chr6 17346329 17346521 -132170516 + B2_Mm1a SINE B2 2 193 0 5 717 10560 39 3 8 chr6 17346521 17347993 -132169044 + L1Md_F3 LINE L1 5108 6563 -21 5 717 207 0 0 0 chr6 17347993 17348016 -132169021 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 717 210 356 14 0 chr6 17348044 17348117 -132168920 - MamSINE1 SINE tRNA -207 83 10 5 717 1194 48 7 0 chr6 17348350 17348496 -132168541 + B1_Mus2 SINE Alu 1 147 0 5 717 187 73 73 0 chr6 17348496 17348537 -132168500 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 5 717 809 196 174 0 chr6 17348547 17348731 -132168306 + B3 SINE B2 1 216 0 5 717 559 247 13 58 chr6 17348814 17348969 -132168068 + B1_Mur1 SINE Alu 1 148 -1 5 717 27 0 0 0 chr6 17348969 17348996 -132168041 + AT_rich Low_complexity Low_complexity 1 27 0 5 717 1436 244 32 63 chr6 17349014 17349394 -132167643 - MTEa LTR MaLR -11 368 1 5 717 753 309 117 10 chr6 17349874 17350172 -132166865 - MLT1A0 LTR MaLR -34 331 2 5 717 308 285 59 90 chr6 17350664 17350880 -132166157 + LTR41B LTR ERVL 484 749 -9 5 717 192 353 38 29 chr6 17352019 17352233 -132164804 + L2a LINE L2 3086 3298 -77 5 717 284 258 10 88 chr6 17352973 17353075 -132163962 + MIR SINE MIR 48 141 -121 5 717 229 277 15 0 chr6 17353076 17353141 -132163896 + Lx8 LINE L1 6721 6786 -687 5 717 186 189 0 0 chr6 17354419 17354456 -132162581 + T-rich Low_complexity Low_complexity 1 37 0 5 717 209 342 129 17 chr6 17355422 17355538 -132161499 + L2a LINE L2 3290 3418 -8 5 717 402 302 51 127 chr6 17356389 17356704 -132160333 + B4A SINE B4 2 292 0 5 717 235 150 33 0 chr6 17356704 17356764 -132160273 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 717 231 315 0 0 chr6 17357202 17357275 -132159762 - MIRb SINE MIR -1 267 195 5 717 2176 162 53 23 chr6 17358412 17358847 -132158190 - Lx4B LINE L1 -7 7051 6604 5 717 482 287 29 97 chr6 17359081 17359137 -132157900 - MER58D DNA MER1_type -42 344 295 5 717 281 26 0 26 chr6 17359137 17359176 -132157861 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 717 633 294 32 80 chr6 17359176 17359474 -132157563 - MER58D DNA MER1_type -92 294 11 5 717 256 355 80 62 chr6 17359551 17359887 -132157150 + LTR81A LTR ERV1? 23 364 -986 5 717 292 325 0 0 chr6 17360016 17360099 -132156938 + B4A SINE B4 206 288 -4 5 717 255 354 120 47 chr6 17360324 17360600 -132156437 + MamGypLTR2 LTR Gypsy 308 603 -586 5 717 261 0 0 0 chr6 17361005 17361034 -132156003 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 717 308 350 41 16 chr6 17361947 17362069 -132154968 + MIRb SINE MIR 53 177 -91 5 717 634 296 6 85 chr6 17362688 17362914 -132154123 - B3A SINE B2 -12 204 4 5 717 1008 248 46 20 chr6 17362924 17363274 -132153763 - Lx8 LINE L1 -142 7331 6973 5 717 5368 162 105 15 chr6 17363609 17364721 -132152316 - Lx5 LINE L1 -3 7047 5836 5 717 1837 115 4 0 chr6 17364724 17365003 -132152034 + Lx5 LINE L1 5588 5867 -1183 5 717 936 279 84 9 chr6 17365453 17365797 -132151240 - ORR1D2 LTR MaLR 0 370 1 5 717 905 112 115 21 chr6 17365804 17365995 -132151042 + L1Md_A LINE L1 6374 6582 0 5 717 601 267 15 44 chr6 17366113 17366250 -132150787 + B3A SINE B2 1 133 -65 5 717 252 0 0 0 chr6 17366250 17366278 -132150759 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 717 504 0 0 0 chr6 17366970 17367026 -132150011 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 5 717 462 18 0 0 chr6 17367533 17367588 -132149449 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 717 200 246 17 17 chr6 17367599 17367657 -132149380 + CT-rich Low_complexity Low_complexity 3 60 0 5 717 508 314 19 6 chr6 17367899 17368056 -132148981 + MIR3 SINE MIR 27 185 -23 5 717 789 281 152 3 chr6 17369114 17369411 -132147626 + MER2 DNA MER2_type 5 345 0 5 717 464 340 68 91 chr6 17369788 17369880 -132147157 + B4A SINE B4 4 93 -199 5 717 369 265 121 0 chr6 17369880 17370012 -132147025 + B1_Mur2 SINE Alu 2 149 0 5 717 464 340 68 91 chr6 17370012 17370139 -132146898 + B4A SINE B4 94 218 -74 5 717 1284 74 0 0 chr6 17370155 17370330 -132146707 - L1_Mus4 LINE L1 -271 6365 6191 5 717 1946 89 37 17 chr6 17370330 17370626 -132146411 + L1_Mus4 LINE L1 6333 6634 -2 5 717 267 133 0 0 chr6 17370690 17370735 -132146302 + (GGGA)n Simple_repeat Simple_repeat 1 45 0 5 717 35 54 0 0 chr6 17371322 17371378 -132145659 + AT_rich Low_complexity Low_complexity 1 56 0 5 717 920 89 66 15 chr6 17371382 17371518 -132145519 + B1_Mus1 SINE Alu 5 147 -1 5 717 246 91 18 35 chr6 17371518 17371575 -132145462 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 5 717 191 36 36 0 chr6 17371847 17371875 -132145162 + (TAA)n Simple_repeat Simple_repeat 2 30 0 5 717 23 33 0 0 chr6 17372957 17372987 -132144050 + AT_rich Low_complexity Low_complexity 1 30 0 5 717 274 269 43 11 chr6 17373157 17373251 -132143786 + MER103 DNA DNA 50 146 -20 5 717 303 198 40 188 chr6 17373867 17374016 -132143021 + RMER15 LTR ERVL 1 127 -448 5 717 457 302 180 0 chr6 17374045 17374217 -132142820 + RMER15 LTR ERVL 302 504 -71 5 717 476 314 99 65 chr6 17374781 17375104 -132141933 + LTR16A1 LTR ERVL 123 456 0 5 717 319 258 36 23 chr6 17375545 17375669 -132141368 - MIR SINE MIR -67 195 80 5 717 21 57 0 0 chr6 17375818 17375853 -132141184 + AT_rich Low_complexity Low_complexity 1 35 0 5 717 939 323 104 23 chr6 17375904 17376335 -132140702 + MLT1D LTR MaLR 36 501 -4 5 717 198 0 0 0 chr6 17376421 17376443 -132140594 + (AAATG)n Simple_repeat Simple_repeat 1 22 0 5 717 719 303 111 37 chr6 17376462 17376641 -132140396 - MTD LTR MaLR -14 405 198 5 717 3458 100 10 12 chr6 17376641 17377155 -132139882 - Lx LINE L1 -1 6653 6141 5 717 719 303 111 37 chr6 17377155 17377352 -132139685 - MTD LTR MaLR -222 197 1 5 717 677 221 8 15 chr6 17377630 17377763 -132139274 + B1_Mur2 SINE Alu 1 132 -17 5 717 740 129 0 8 chr6 17377814 17377939 -132139098 + (GGAA)n Simple_repeat Simple_repeat 2 125 0 5 717 382 254 57 8 chr6 17378055 17378178 -132138859 + Lx4B LINE L1 6926 7054 -4 5 717 621 54 17 35 chr6 17378180 17378295 -132138742 + (CAAAA)n Simple_repeat Simple_repeat 3 115 0 5 717 485 244 30 0 chr6 17378450 17378581 -132138456 - L1MA7 LINE L1 -41 6250 6116 5 717 409 296 35 21 chr6 17378856 17379001 -132138036 - HAL1-3A_ME LINE L1 -737 2121 1975 6 717 355 267 0 0 chr6 17379007 17379067 -132137970 - RSINE1 SINE B4 0 165 106 6 717 566 228 60 33 chr6 17379137 17379148 -132137889 - RSINE1 SINE B4 -8 157 149 6 717 336 24 0 0 chr6 17379148 17379189 -132137848 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 717 566 228 60 33 chr6 17379189 17379327 -132137710 - RSINE1 SINE B4 -17 148 4 6 717 23 0 0 0 chr6 17379649 17379672 -132137365 + AT_rich Low_complexity Low_complexity 1 23 0 6 717 838 225 42 195 chr6 17380457 17380904 -132136133 - MTE2a LTR MaLR 0 379 1 6 717 24 67 0 0 chr6 17381722 17381767 -132135270 + AT_rich Low_complexity Low_complexity 1 45 0 6 717 675 115 104 37 chr6 17382820 17382911 -132134126 - B1_Mus1 SINE Alu 0 148 52 6 717 237 0 0 139 chr6 17382911 17383019 -132134018 + (CCCTG)n Simple_repeat Simple_repeat 3 95 0 6 717 675 115 104 37 chr6 17383019 17383062 -132133975 - B1_Mus1 SINE Alu -97 51 6 6 717 240 267 188 39 chr6 17383301 17383483 -132133554 + MIRb SINE MIR 23 224 -52 6 717 611 325 103 18 chr6 17383871 17384144 -132132893 - RMER15 LTR ERVL -3 572 277 6 717 285 236 48 124 chr6 17384203 17384348 -132132689 - RMER15 LTR ERVL -441 134 1 6 717 262 356 0 0 chr6 17384978 17385065 -132131972 + BC1_Mm scRNA scRNA 2 88 -64 6 717 301 306 0 10 chr6 17385352 17385448 -132131589 + ID4 SINE ID 1 95 -57 6 717 250 315 137 0 chr6 17385647 17385720 -132131317 - PB1 SINE Alu -36 91 9 6 717 702 273 150 15 chr6 17385807 17386067 -132130970 - L4 LINE RTE -132 1897 1603 6 717 980 9 0 0 chr6 17386305 17386412 -132130625 + U6 snRNA snRNA 1 107 0 6 717 23695 19 1 0 chr6 17386412 17389693 -132127344 + L1Md_A LINE L1 2304 5586 -297 6 717 8886 34 0 7 chr6 17389693 17389740 -132127297 + L1Md_A LINE L1 5587 5633 -949 6 717 3497 33 3 0 chr6 17389740 17390129 -132126908 - RLTR10 LTR ERVK 0 390 1 6 717 8886 34 0 7 chr6 17390129 17391081 -132125956 + L1Md_A LINE L1 5634 6579 -3 6 717 807 261 56 23 chr6 17391275 17391491 -132125546 + B4 SINE B4 34 256 -36 6 717 435 38 0 0 chr6 17391495 17391548 -132125489 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 717 275 366 89 89 chr6 17391844 17392303 -132124734 + MLT1J LTR MaLR 7 465 -47 6 717 244 298 70 38 chr6 17392820 17392977 -132124060 - MLT1J LTR MaLR -4 508 347 6 717 456 261 49 32 chr6 17393238 17393361 -132123676 - ID_B1 SINE B4 0 224 100 6 717 570 333 38 69 chr6 17393380 17393641 -132123396 + MLT1G1 LTR MaLR 327 579 0 6 717 680 300 29 10 chr6 17393724 17393933 -132123104 + ID_B1 SINE B4 5 217 -7 6 717 403 342 74 22 chr6 17394833 17395063 -132121974 - MLT1J LTR MaLR -242 270 29 6 717 187 316 0 17 chr6 17397090 17397148 -132119889 - L2c LINE L2 -63 3324 3268 6 717 224 245 0 39 chr6 17397387 17397438 -132119599 + B2_Mm2 SINE B2 4 52 -143 6 717 2099 262 30 36 chr6 17397444 17398219 -132118818 + Lx8 LINE L1 5333 6098 -1598 6 717 270 0 0 0 chr6 17398270 17398300 -132118737 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 717 436 270 23 38 chr6 17398317 17398448 -132118589 + Lx8 LINE L1 6214 6342 -1131 6 717 1976 298 59 86 chr6 17398454 17399485 -132117552 + Lx8 LINE L1 6466 7468 -5 6 717 381 278 40 60 chr6 17399629 17399842 -132117195 - MLT1E1 LTR MaLR -3 621 431 6 717 333 248 26 103 chr6 17399988 17400004 -132117033 + MT2B LTR ERVL 152 199 -402 6 717 548 155 0 0 chr6 17400004 17400088 -132116949 + B1_Mus1 SINE Alu 2 85 -63 6 717 333 248 26 103 chr6 17400088 17400105 -132116932 + MT2B LTR ERVL 200 259 -342 6 717 771 285 26 16 chr6 17400290 17400327 -132116710 - B3A SINE B2 -6 192 157 6 717 381 117 0 0 chr6 17400327 17400387 -132116650 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 717 771 285 26 16 chr6 17400387 17400538 -132116499 - B3A SINE B2 -42 156 2 6 717 710 288 39 39 chr6 17401307 17401564 -132115473 - LTR84b LTR ERVL -499 262 6 6 717 232 339 110 55 chr6 17402002 17402202 -132114835 - L2c LINE L2 -128 3259 3049 6 717 235 265 69 46 chr6 17402438 17402525 -132114512 - MTEa LTR MaLR -12 367 279 6 717 2140 148 85 12 chr6 17402618 17402960 -132114077 - ORR1B2 LTR MaLR 0 367 1 6 717 232 176 156 56 chr6 17403016 17403106 -132113931 - MTEa LTR MaLR -224 135 37 6 717 627 307 0 30 chr6 17403695 17403863 -132113174 + RSINE1 SINE B4 3 165 0 6 717 22 0 0 0 chr6 17403872 17403894 -132113143 + AT_rich Low_complexity Low_complexity 1 22 0 6 717 397 344 32 26 chr6 17404132 17404287 -132112750 - MLT2E LTR ERVL -400 228 73 6 717 690 13 0 0 chr6 17404706 17404785 -132112252 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 6 717 614 279 26 36 chr6 17404883 17405076 -132111961 - MER2 DNA MER2_type -8 337 147 6 717 269 267 44 111 chr6 17405277 17405412 -132111625 + L2c LINE L2 3248 3373 -14 6 717 3220 116 57 28 chr6 17406963 17407468 -132109569 - Lx2 LINE L1 -5 6992 6473 6 717 522 118 0 0 chr6 17407546 17407639 -132109398 + (GA)n Simple_repeat Simple_repeat 1 93 0 6 717 554 327 108 5 chr6 17407649 17407861 -132109176 - B4A SINE B4 -58 234 1 6 717 2060 264 116 35 chr6 17407944 17408676 -132108361 - Lx8 LINE L1 -7 7466 6676 6 717 228 266 238 14 chr6 17409751 17409913 -132107124 + MIRc SINE MIR 19 215 -53 6 717 450 0 0 0 chr6 17412346 17412396 -132104641 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 717 230 259 118 42 chr6 17412580 17412702 -132104335 + MIRb SINE MIR 22 144 -64 6 717 673 229 147 11 chr6 17416411 17416588 -132100449 - B3 SINE B2 -15 201 1 6 717 537 80 0 0 chr6 17417244 17417319 -132099718 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 717 261 139 0 0 chr6 17417379 17417422 -132099615 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 717 240 200 0 0 chr6 17417425 17417475 -132099562 + CT-rich Low_complexity Low_complexity 6 55 0 6 717 558 0 0 0 chr6 17419531 17419593 -132097444 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 717 434 333 84 62 chr6 17419656 17419976 -132097061 + MER121 Unknown Unknown 13 339 -73 6 717 522 70 0 0 chr6 17421509 17421580 -132095457 + (TCCC)n Simple_repeat Simple_repeat 4 74 0 6 717 1780 287 96 37 chr6 17421758 17422457 -132094580 - Lx8 LINE L1 -221 7252 6513 6 717 774 279 92 29 chr6 17422457 17422823 -132094214 - Lx8 LINE L1 -1332 6364 5994 6 717 278 203 89 126 chr6 17422794 17422929 -132094108 - Lx8 LINE L1 -1000 5444 5260 6 717 315 0 0 0 chr6 17423015 17423050 -132093987 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 717 216 135 0 0 chr6 17424731 17424768 -132092269 + (TAA)n Simple_repeat Simple_repeat 1 37 0 6 717 183 357 76 38 chr6 17425946 17426077 -132090960 - L2 LINE L2 -583 2836 2701 6 717 968 268 114 83 chr6 17426354 17426704 -132090333 - MTEb LTR MaLR -16 363 3 6 717 261 323 134 66 chr6 17426729 17427332 -132089705 + L2a LINE L2 2309 2952 -467 6 717 207 305 171 44 chr6 17427530 17427688 -132089349 + L2a LINE L2 3241 3418 -8 6 717 180 0 0 0 chr6 17428360 17428380 -132088657 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 717 356 274 37 64 chr6 17429133 17429242 -132087795 + PB1D10 SINE Alu 10 115 -2 6 717 195 184 0 0 chr6 17429243 17429281 -132087756 + GA-rich Low_complexity Low_complexity 2 39 0 6 717 234 336 61 23 chr6 17430612 17430743 -132086294 + B1F1 SINE Alu 1 136 -13 6 717 229 366 14 0 chr6 17430756 17430827 -132086210 + ID4_ SINE ID 2 73 -10 6 717 297 215 50 12 chr6 17431007 17431087 -132085950 + MER53 DNA hAT 97 179 -14 6 717 345 217 48 0 chr6 17431018 17431101 -132085936 - MER53 DNA hAT -96 97 11 6 717 237 277 31 0 chr6 17431815 17431880 -132085157 + ID4 SINE ID 1 67 -16 6 717 205 211 28 14 chr6 17431884 17431956 -132085081 + GA-rich Low_complexity Low_complexity 5 77 0 6 89 5740 131 17 9 chr6 17432439 17433301 -132083736 - Lx2B LINE L1 0 7000 6132 6 718 529 298 88 65 chr6 17433377 17433639 -132083398 - B4A SINE B4 -16 276 9 6 718 383 365 20 7 chr6 17434299 17434445 -132082592 - MLT1K LTR MaLR -114 481 334 6 718 427 356 32 7 chr6 17435925 17436127 -132080910 - MER63A DNA AcHobo -4 206 1 6 718 256 256 44 44 chr6 17436135 17436225 -132080812 - MIR SINE MIR -63 145 56 6 718 877 44 0 0 chr6 17437373 17437487 -132079550 + L1Md_A LINE L1 6469 6582 0 6 718 193 318 22 45 chr6 17437495 17437584 -132079453 - MIR SINE MIR -75 133 47 6 718 540 0 0 0 chr6 17437607 17437667 -132079370 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 718 192 277 138 32 chr6 17437754 17437877 -132079160 + MIR SINE MIR 127 262 0 6 718 190 323 16 16 chr6 17438631 17438694 -132078343 + L2b LINE L2 3229 3291 -84 6 718 188 374 18 36 chr6 17439759 17439870 -132077167 - L2a LINE L2 -8 3418 3310 6 718 378 0 0 0 chr6 17440611 17440653 -132076384 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 718 762 294 74 70 chr6 17442636 17442921 -132074116 + B4 SINE B4 1 286 -6 6 718 377 39 20 0 chr6 17442943 17442994 -132074043 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 718 706 135 14 29 chr6 17442995 17443419 -132073618 + (CAGAGA)n Simple_repeat Simple_repeat 1 417 0 6 718 852 319 55 47 chr6 17445476 17445986 -132071051 - Kanga2_a DNA Tc2 -321 567 54 6 718 302 248 41 16 chr6 17446136 17446259 -132070778 - Lx2B LINE L1 -3 6997 6872 6 718 218 227 0 0 chr6 17446663 17446707 -132070330 + A-rich Low_complexity Low_complexity 1 44 0 6 718 302 256 11 23 chr6 17446740 17446828 -132070209 - Lx7 LINE L1 -374 7322 7236 6 718 252 167 0 0 chr6 17449535 17449583 -132067454 + T-rich Low_complexity Low_complexity 1 48 0 6 718 898 55 0 124 chr6 17451145 17451290 -132065747 + B1_Mus2 SINE Alu 1 127 -20 6 718 990 129 0 0 chr6 17451293 17451456 -132065581 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 6 718 21 36 0 0 chr6 17453037 17453065 -132063972 + AT_rich Low_complexity Low_complexity 1 28 0 6 718 31 44 0 0 chr6 17456306 17456351 -132060686 + AT_rich Low_complexity Low_complexity 1 45 0 6 718 476 263 219 31 chr6 17456429 17456625 -132060412 - Lx8 LINE L1 -116 7357 7125 6 718 229 259 56 0 chr6 17456686 17456740 -132060297 + tRNA-Ala-GCY_ tRNA tRNA 2 58 -17 6 718 515 141 12 0 chr6 17458403 17458488 -132058549 - Lx2A1 LINE L1 -366 6642 6557 6 718 286 309 12 12 chr6 17459985 17460067 -132056970 + ID4_ SINE ID 1 82 -1 7 718 979 144 7 0 chr6 17460162 17460308 -132056729 + B1_Mus1 SINE Alu 2 148 0 7 718 3644 32 0 0 chr6 17460371 17460782 -132056255 + MERVL-int LTR ERVL 4318 4728 -757 7 718 22 0 0 0 chr6 17461482 17461504 -132055533 + AT_rich Low_complexity Low_complexity 1 22 0 7 718 1120 240 119 25 chr6 17461664 17462007 -132055030 + MTD LTR MaLR 31 380 -39 7 718 258 105 0 0 chr6 17462942 17462980 -132054057 + (CAT)n Simple_repeat Simple_repeat 3 40 0 7 718 626 232 64 11 chr6 17465098 17465285 -132051752 - Lx9 LINE L1 -6 7638 7442 7 718 881 275 69 41 chr6 17468062 17468413 -132048624 - ORR1E LTR MaLR 0 379 1 7 718 1063 93 146 18 chr6 17468533 17468698 -132048339 - B2_Mm2 SINE B2 -9 186 1 7 718 218 32 32 0 chr6 17469813 17469844 -132047193 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 7 718 720 188 27 55 chr6 17469932 17470078 -132046959 + B1_Mur2 SINE Alu 2 143 -6 7 718 1269 291 69 67 chr6 17470078 17470646 -132046391 + L1MB7 LINE L1 5542 6110 -74 7 718 265 140 35 0 chr6 17470979 17471036 -132046001 + CT-rich Low_complexity Low_complexity 1 59 0 7 718 3118 98 65 17 chr6 17471138 17471597 -132045440 + Lx LINE L1 6158 6638 -16 7 718 203 200 0 0 chr6 17471597 17471632 -132045405 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 718 2340 160 70 18 chr6 17473310 17473710 -132043327 - MTC LTR MaLR 0 421 1 7 718 251 54 0 26 chr6 17473758 17473796 -132043241 + (TTA)n Simple_repeat Simple_repeat 3 39 0 7 718 203 179 15 0 chr6 17473824 17473891 -132043146 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 7 718 369 0 0 0 chr6 17474547 17474588 -132042449 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 7 718 4269 88 18 2 chr6 17475062 17475619 -132041418 - Lx LINE L1 -3 6651 6086 7 718 252 0 0 0 chr6 17475656 17475684 -132041353 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 718 215 248 88 0 chr6 17475735 17475813 -132041224 - MIR SINE MIR -183 93 8 7 718 1222 68 0 0 chr6 17475842 17475988 -132041049 + B1_Mm SINE Alu 1 146 -1 7 718 363 98 0 0 chr6 17478461 17478522 -132038515 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 718 1077 167 27 22 chr6 17480849 17481033 -132036004 + B2_Mm2 SINE B2 2 186 -9 7 718 343 327 108 32 chr6 17481186 17481344 -132035693 + B3 SINE B2 47 216 0 7 718 419 302 17 33 chr6 17481943 17482063 -132034974 - RSINE1 SINE B4 -33 132 15 7 718 1273 61 0 0 chr6 17482602 17482749 -132034288 + B1_Mm SINE Alu 1 147 0 7 718 645 80 0 0 chr6 17482995 17483083 -132033954 + (TA)n Simple_repeat Simple_repeat 1 88 0 7 718 1073 283 22 14 chr6 17483122 17483398 -132033639 + B4 SINE B4 4 281 -11 7 718 1083 253 61 14 chr6 17486137 17486434 -132030603 + MTD LTR MaLR 16 326 -93 7 718 436 280 10 88 chr6 17487014 17487206 -132029831 + MTD LTR MaLR 243 419 0 7 718 441 263 25 8 chr6 17487745 17487864 -132029173 + ID_B1 SINE B4 102 222 -2 7 718 346 188 10 150 chr6 17489709 17489809 -132027228 + B1_Mm SINE Alu 50 135 -12 7 718 232 342 0 14 chr6 17491094 17491168 -132025869 - RSINE1 SINE B4 -15 150 78 7 718 213 132 42 42 chr6 17491203 17491274 -132025763 + (TA)n Simple_repeat Simple_repeat 1 71 0 7 718 1263 269 128 89 chr6 17491300 17492021 -132025016 - Lx8 LINE L1 -37 7436 6688 7 718 244 261 0 178 chr6 17492021 17492128 -132024909 - PB1D7 SINE Alu -13 107 20 7 718 284 339 69 76 chr6 17492048 17492179 -132024858 - B4A SINE B4 -118 174 45 7 718 558 322 17 45 chr6 17493680 17493859 -132023178 + B3A SINE B2 1 174 -24 7 718 306 351 45 0 chr6 17493913 17494024 -132023013 + PB1D10 SINE Alu 1 116 -1 7 718 355 371 39 21 chr6 17494352 17494586 -132022451 - MIRc SINE MIR -3 265 28 7 718 828 202 50 55 chr6 17494720 17494919 -132022118 - B3A SINE B2 0 198 1 7 718 230 213 134 92 chr6 17495213 17495332 -132021705 + Charlie26a DNA MER1_type 166 289 -36 7 718 180 305 17 17 chr6 17496478 17496538 -132020499 + MER5B DNA MER1_type 93 152 -26 7 718 1389 97 5 16 chr6 17497526 17497715 -132019322 - B2_Mm2 SINE B2 -7 188 2 7 718 590 220 188 0 chr6 17497908 17498094 -132018943 - L1MB4 LINE L1 -193 5987 5767 7 718 263 275 36 81 chr6 17500196 17500307 -132016730 + B4A SINE B4 2 107 -185 1 718 339 226 151 0 chr6 17500331 17500424 -132016613 + B4A SINE B4 186 292 0 1 718 474 18 0 0 chr6 17500461 17500516 -132016521 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 718 384 22 0 0 chr6 17501349 17501394 -132015643 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 718 546 79 0 0 chr6 17501849 17501925 -132015112 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 718 379 280 128 98 chr6 17501938 17502203 -132014834 - B4A SINE B4 -18 274 2 5 718 458 280 142 34 chr6 17502620 17502853 -132014184 - Lx8 LINE L1 -29 7444 7187 6 718 378 0 0 0 chr6 17503028 17503070 -132013967 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 718 279 0 0 0 chr6 17504474 17504505 -132012532 + (GA)n Simple_repeat Simple_repeat 2 32 0 8 718 21 89 0 0 chr6 17505182 17505238 -132011799 + AT_rich Low_complexity Low_complexity 1 56 0 9 718 305 288 82 60 chr6 17506078 17506311 -132010726 - Tigger15a DNA TcMar -8 707 470 1 718 268 131 200 14 chr6 17507039 17507109 -132009928 + B4A SINE B4 141 223 -69 1 718 324 0 0 0 chr6 17507149 17507185 -132009852 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 718 263 256 39 0 chr6 17507410 17507494 -132009543 + MER58A DNA MER1_type 86 178 -46 1 718 236 271 194 28 chr6 17507683 17507827 -132009210 + LTR48 LTR ERV1 3 170 -617 1 718 397 232 10 20 chr6 17508272 17508373 -132008664 + B3 SINE B2 1 100 -116 1 718 436 268 0 0 chr6 17508928 17509025 -132008012 - B3 SINE B2 -117 99 3 1 718 612 266 0 38 chr6 17509103 17509263 -132007774 - B4A SINE B4 -23 269 116 1 718 472 228 39 23 chr6 17509276 17509406 -132007631 - B4A SINE B4 -160 132 1 1 718 232 193 145 26 chr6 17509490 17509607 -132007430 + MER33 DNA MER1_type 119 249 -75 1 718 219 299 172 0 chr6 17509699 17509786 -132007251 + L2b LINE L2 3272 3373 -2 1 718 238 220 16 63 chr6 17510703 17510766 -132006271 + MER74A LTR ERVL 32 91 -467 2 718 4470 90 118 43 chr6 17510767 17511489 -132005548 - L1_Mus3 LINE L1 0 6638 5863 2 718 969 262 156 50 chr6 17511489 17511907 -132005130 + MER74A LTR ERVL 97 558 0 2 718 221 365 47 23 chr6 17511913 17512042 -132004995 + MIRb SINE MIR 131 262 -6 2 718 728 99 0 9 chr6 17512361 17512473 -132004564 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 2 718 1425 12 0 0 chr6 17514636 17514799 -132002238 + (GAAA)n Simple_repeat Simple_repeat 4 166 0 2 718 234 0 0 0 chr6 17514799 17514825 -132002212 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 2 718 760 227 80 57 chr6 17515202 17515422 -132001615 + B4A SINE B4 4 237 -55 2 718 726 206 167 11 chr6 17515422 17515608 -132001429 + B3 SINE B2 1 215 -1 2 718 760 227 80 57 chr6 17515608 17515649 -132001388 + B4A SINE B4 238 271 -21 2 718 483 130 0 0 chr6 17515649 17515726 -132001311 + (CATA)n Simple_repeat Simple_repeat 4 80 0 2 718 369 0 0 0 chr6 17515727 17515768 -132001269 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 718 643 291 56 20 chr6 17515775 17516131 -132000906 + L1ME1 LINE L1 5795 6165 -13 3 718 1737 70 8 34 chr6 17516761 17517026 -132000011 - L1_Mus3 LINE L1 0 6638 6381 3 718 675 322 75 3 chr6 17517149 17517510 -131999527 - L1M5 LINE L1 -490 5689 5303 3 718 274 194 0 53 chr6 17518002 17518078 -131998959 - B1F SINE Alu 0 149 78 3 718 835 272 5 19 chr6 17518078 17518288 -131998749 - ID_B1 SINE B4 -14 210 4 3 718 385 269 39 0 chr6 17518518 17518622 -131998415 - PB1D10 SINE Alu -9 108 1 3 718 228 337 10 10 chr6 17519092 17519188 -131997849 + B1_Mur4 SINE Alu 4 99 -51 3 718 595 261 12 24 chr6 17519231 17519396 -131997641 + RSINE1 SINE B4 3 165 0 3 718 657 0 0 0 chr6 17519402 17519475 -131997562 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 3 718 810 47 0 0 chr6 17520273 17520380 -131996657 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 718 736 316 36 36 chr6 17520404 17520683 -131996354 - B4A SINE B4 -13 279 1 4 718 225 338 39 0 chr6 17520695 17520764 -131996273 - B3 SINE B2 -34 182 111 4 718 598 244 66 18 chr6 17520764 17520931 -131996106 + B3 SINE B2 3 177 -39 4 718 184 29 83 28 chr6 17521930 17521966 -131995071 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 4 718 533 239 47 47 chr6 17522569 17522718 -131994319 + B1F SINE Alu 1 149 0 4 718 2033 196 7 26 chr6 17524833 17525248 -131991789 - MTD LTR MaLR 0 419 13 4 718 460 279 49 28 chr6 17525272 17525416 -131991621 + B4A SINE B4 2 148 -144 4 718 900 207 60 10 chr6 17525480 17525680 -131991357 + MTD LTR MaLR 1 210 -209 4 718 3409 201 204 16 chr6 17525688 17526581 -131990456 + RMER1B Other Other 7 1055 -11 4 718 227 268 10 0 chr6 17526581 17526678 -131990359 + GA-rich Low_complexity Low_complexity 1 98 0 4 718 783 201 122 25 chr6 17526680 17526884 -131990153 + MTD LTR MaLR 196 419 0 4 718 464 93 13 0 chr6 17526973 17527048 -131989989 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 718 208 188 42 0 chr6 17528950 17528998 -131988039 + CT-rich Low_complexity Low_complexity 2 51 0 5 718 293 291 25 0 chr6 17529128 17529207 -131987830 + B4A SINE B4 1 81 -211 5 718 327 267 20 0 chr6 17529243 17529344 -131987693 + Lx9 LINE L1 7389 7491 -153 5 718 235 171 86 0 chr6 17529379 17529449 -131987588 + Lx8 LINE L1 7396 7471 -2 5 718 539 243 22 174 chr6 17529452 17529676 -131987361 + B4A SINE B4 83 272 -20 5 718 913 136 4 11 chr6 17529714 17529992 -131987045 + (TG)n Simple_repeat Simple_repeat 1 275 0 5 718 703 144 0 37 chr6 17530011 17530198 -131986839 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 718 396 0 0 0 chr6 17530199 17530243 -131986794 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 718 1779 62 0 0 chr6 17530801 17531043 -131985994 - L1Md_T LINE L1 0 6582 6358 5 718 219 167 21 0 chr6 17531043 17531073 -131985964 + T-rich Low_complexity Low_complexity 3 32 0 5 718 24 0 0 0 chr6 17531927 17531951 -131985086 + AT_rich Low_complexity Low_complexity 1 24 0 5 718 6082 41 35 0 chr6 17532783 17533516 -131983521 + L1Md_F2 LINE L1 5824 6582 0 6 718 1090 112 122 0 chr6 17533551 17533748 -131983289 - URR1A DNA MER1_type 0 226 6 6 718 249 177 16 16 chr6 17534546 17534609 -131982428 + (TAA)n Simple_repeat Simple_repeat 1 63 0 6 718 243 0 0 0 chr6 17536924 17536951 -131980086 + (A)n Simple_repeat Simple_repeat 1 27 0 6 718 242 339 5 127 chr6 17537221 17537410 -131979627 - MLT1A1 LTR MaLR -204 204 39 6 718 422 294 57 32 chr6 17537993 17538151 -131978886 + ID_B1 SINE B4 32 193 -31 6 718 3527 25 2 0 chr6 17538151 17538546 -131978491 - MTA_Mm LTR MaLR 0 396 1 6 718 218 229 21 0 chr6 17538578 17538626 -131978411 + GA-rich Low_complexity Low_complexity 4 52 0 6 718 495 0 0 0 chr6 17540175 17540230 -131976807 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 718 189 0 0 0 chr6 17540230 17540250 -131976787 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 718 777 171 0 0 chr6 17541110 17541256 -131975781 + GA-rich Low_complexity Low_complexity 1 146 0 7 718 21 36 0 0 chr6 17541597 17541625 -131975412 + AT_rich Low_complexity Low_complexity 1 28 0 7 718 731 242 28 62 chr6 17541628 17541839 -131975198 + B3 SINE B2 2 205 -11 7 718 226 353 27 97 chr6 17542721 17542906 -131974131 - MER102c DNA MER1_type -122 209 38 7 718 313 339 89 26 chr6 17542999 17543190 -131973847 - MIRb SINE MIR -64 204 2 7 718 3274 142 88 38 chr6 17543822 17544479 -131972558 - RMER6C LTR ERVK 0 690 1 7 718 28 29 0 0 chr6 17544585 17544620 -131972417 + AT_rich Low_complexity Low_complexity 1 35 0 7 718 1109 50 50 0 chr6 17544729 17544869 -131972168 + B1_Mm SINE Alu 1 147 0 7 718 185 0 40 0 chr6 17544869 17544894 -131972143 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 718 320 294 20 23 chr6 17545401 17545548 -131971489 - MIRc SINE MIR -110 158 9 7 718 265 301 40 96 chr6 17546132 17546257 -131970780 - L2a LINE L2 -15 3411 3294 8 718 679 314 52 16 chr6 17546884 17547136 -131969901 + B4 SINE B4 6 266 -26 8 718 333 0 0 0 chr6 17547136 17547173 -131969864 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 718 1584 153 82 64 chr6 17547453 17547795 -131969242 - ORR1C2 LTR MaLR 0 384 37 8 718 348 304 237 33 chr6 17547795 17548176 -131968861 + L2a LINE L2 2366 2835 -584 8 718 1112 227 152 16 chr6 17548176 17548498 -131968539 - ORR1D2 LTR MaLR -4 366 1 8 718 348 304 237 33 chr6 17548498 17548538 -131968499 + L2a LINE L2 2836 2873 -546 8 718 273 304 29 29 chr6 17548861 17548966 -131968071 + L2a LINE L2 3301 3405 -21 8 718 1391 174 158 3 chr6 17548998 17549309 -131967728 + ORR1B2 LTR MaLR 1 359 -8 8 718 938 240 31 68 chr6 17550075 17550485 -131966552 + RMER10B LTR ERVL 1 368 -30 8 718 381 321 38 0 chr6 17550618 17550749 -131966288 + B1F SINE Alu 5 140 -9 8 718 258 32 0 0 chr6 17550756 17550787 -131966250 + (GA)n Simple_repeat Simple_repeat 1 31 0 8 718 214 162 12 191 chr6 17550827 17550911 -131966126 - B3A SINE B2 -120 78 10 9 718 265 280 67 0 chr6 17551088 17551163 -131965874 + RMER15 LTR ERVL 361 440 -135 9 718 414 0 0 0 chr6 17551207 17551253 -131965784 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 9 718 24 0 0 0 chr6 17551995 17552019 -131965018 + AT_rich Low_complexity Low_complexity 1 24 0 9 718 273 244 14 150 chr6 17552078 17552218 -131964819 - Lx7 LINE L1 -17 7679 7559 9 718 841 101 14 7 chr6 17552219 17552358 -131964679 + (GAAA)n Simple_repeat Simple_repeat 2 141 0 9 718 2328 253 41 14 chr6 17552361 17552999 -131964038 - Lx7 LINE L1 -363 7333 6679 9 718 553 259 14 14 chr6 17553054 17553199 -131963838 + B1_Mur1 SINE Alu 5 149 0 9 718 266 211 0 0 chr6 17553543 17553595 -131963442 + L1MC3 LINE L1 6807 6858 -927 9 718 321 145 0 0 chr6 17553610 17553672 -131963365 + (GA)n Simple_repeat Simple_repeat 2 63 0 9 718 252 0 0 0 chr6 17553881 17553909 -131963128 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 718 326 250 0 88 chr6 17554133 17554247 -131962790 + Charlie23a DNA MER1_type 80 183 -156 1 718 344 368 108 12 chr6 17554871 17555297 -131961740 + L1_Mur3 LINE L1 2073 2539 -3341 1 718 2428 209 63 3 chr6 17555295 17555836 -131961201 - RMER1B Other Other 0 1066 403 1 718 418 293 69 72 chr6 17555848 17556066 -131960971 - RLTR15 LTR ERVK -39 320 99 1 718 423 0 0 0 chr6 17556066 17556113 -131960924 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 718 418 293 69 72 chr6 17556113 17556170 -131960867 - RLTR15 LTR ERVK -261 98 46 1 718 429 188 10 40 chr6 17556418 17556518 -131960519 - RLTR12B LTR ERVK -424 104 8 1 718 1628 241 82 20 chr6 17556526 17557234 -131959803 - RMER1A Other Other -559 471 1 1 718 279 251 22 0 chr6 17557366 17557459 -131959578 + L1M2 LINE L1 2783 2877 -3269 1 718 434 331 66 40 chr6 17557483 17557757 -131959280 + B4A SINE B4 3 283 -9 1 718 538 310 19 65 chr6 17557814 17558186 -131958851 + L1M2 LINE L1 2900 3254 -2889 1 718 1335 128 5 10 chr6 17558196 17558401 -131958636 - ORR1A4 LTR MaLR 0 329 126 1 718 1336 274 104 67 chr6 17558401 17559088 -131957949 + RMER13A LTR ERVK 1 773 -135 1 718 795 154 14 27 chr6 17559153 17559300 -131957737 - ORR1A4 LTR MaLR -184 145 1 1 718 456 314 86 9 chr6 17559300 17559522 -131957515 + L1M2 LINE L1 3266 3504 -2639 1 718 1334 291 31 39 chr6 17559524 17560007 -131957030 + Lx8 LINE L1 6285 6763 -710 1 718 2053 217 32 2 chr6 17560033 17560440 -131956597 + MTD LTR MaLR 1 419 0 1 718 1100 305 55 12 chr6 17560551 17561058 -131955979 + L1M2 LINE L1 5255 5783 -517 1 718 231 36 0 0 chr6 17561065 17561093 -131955944 + (TGG)n Simple_repeat Simple_repeat 2 29 0 1 718 476 122 40 0 chr6 17561098 17561172 -131955865 + B1_Mus2 SINE Alu 63 139 -8 1 718 242 95 0 23 chr6 17561189 17561232 -131955805 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 1 718 621 388 67 8 chr6 17561710 17562097 -131954940 - LTR16A LTR ERVL 0 451 42 1 718 586 260 0 16 chr6 17562218 17562347 -131954690 - B1_Mur1 SINE Alu -1 148 22 1 718 779 307 0 5 chr6 17562371 17562564 -131954473 - B4 SINE B4 -95 197 6 1 718 292 386 6 12 chr6 17563216 17563389 -131953648 - MIR SINE MIR 0 262 91 1 719 355 244 33 22 chr6 17564368 17564460 -131952577 + ID_B1 SINE B4 121 213 -11 1 719 324 236 0 65 chr6 17565117 17565194 -131951843 + ORSL DNA Tip100 29 100 -175 1 719 28 0 0 0 chr6 17565197 17565225 -131951812 + AT_rich Low_complexity Low_complexity 1 28 0 1 719 321 89 0 0 chr6 17565250 17565295 -131951742 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 719 264 246 0 32 chr6 17565333 17565396 -131951641 - ID SINE ID -162 62 2 1 719 596 72 0 35 chr6 17565460 17565546 -131951491 - B1_Mm SINE Alu 0 147 65 1 719 360 0 0 0 chr6 17565859 17565899 -131951138 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 1 719 355 328 235 21 chr6 17566811 17567054 -131949983 + RMER15 LTR ERVL 277 571 -4 1 719 957 238 9 23 chr6 17567242 17567461 -131949576 - B3 SINE B2 0 216 1 1 719 2908 40 0 3 chr6 17567964 17568311 -131948726 + ORR1A1 LTR MaLR 1 346 0 1 719 2621 106 42 18 chr6 17568311 17569260 -131947777 + ORR1A1-int LTR MaLR 1 1792 0 1 719 2876 40 0 20 chr6 17569260 17569613 -131947424 + ORR1A1 LTR MaLR 1 346 0 1 719 504 268 89 28 chr6 17569684 17569960 -131947077 + MLT1A0 LTR MaLR 15 365 0 1 719 354 328 103 48 chr6 17570649 17570921 -131946116 + B4A SINE B4 5 291 -1 1 719 219 293 171 0 chr6 17571074 17571156 -131945881 + MER5A DNA MER1_type 27 122 -67 1 719 697 189 8 0 chr6 17571475 17571607 -131945430 - B1_Mus2 SINE Alu -10 137 5 1 719 237 233 16 16 chr6 17571987 17572048 -131944989 + B1F SINE Alu 69 129 -20 1 719 198 136 0 0 chr6 17572154 17572198 -131944839 + (A)n Simple_repeat Simple_repeat 1 44 0 1 719 522 323 24 35 chr6 17573015 17573185 -131943852 - RMER5 LTR ERV1 0 534 367 1 719 2047 150 3 3 chr6 17573186 17573513 -131943524 + ORR1A2 LTR MaLR 1 327 0 1 719 6475 156 34 9 chr6 17573513 17574708 -131942329 + ORR1A2-int LTR MaLR 1 1224 -568 1 719 1013 109 16 54 chr6 17574689 17574846 -131942191 + ORR1A2-int LTR MaLR 1786 1942 -21 1 719 3220 56 2 2 chr6 17574846 17575240 -131941797 + MTA_Mm LTR MaLR 1 394 -2 1 719 1013 109 16 54 chr6 17575240 17575267 -131941770 + ORR1A2-int LTR MaLR 1943 1963 0 1 719 2132 109 48 0 chr6 17575267 17575579 -131941458 + ORR1A2 LTR MaLR 1 327 0 1 719 393 250 0 0 chr6 17575759 17575835 -131941202 + ID4 SINE ID 1 76 -7 1 719 219 69 0 0 chr6 17575835 17575864 -131941173 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1 719 345 345 9 0 chr6 17575953 17576066 -131940971 + PB1D10 SINE Alu 2 115 -2 1 719 4394 74 13 0 chr6 17576187 17576810 -131940227 - MusHAL1 LINE L1 -799 1913 1283 1 719 43 64 0 0 chr6 17577125 17577203 -131939834 + AT_rich Low_complexity Low_complexity 1 78 0 1 719 404 307 127 16 chr6 17577275 17577646 -131939391 - L1M4 LINE L1 -389 5789 5378 1 719 250 242 14 127 chr6 17577679 17577821 -131939216 - L1M4 LINE L1 -747 5437 5312 1 719 932 301 51 18 chr6 17577978 17578310 -131938727 - RMER5 LTR ERV1 -191 343 1 1 719 467 314 65 7 chr6 17578435 17578573 -131938464 - B1F SINE Alu -2 147 2 1 719 240 356 29 9 chr6 17578812 17578857 -131938180 - ID_B1 SINE B4 -109 115 9 1 719 314 200 33 0 chr6 17578857 17578917 -131938120 - tRNA-Ala-GCY_ tRNA tRNA -11 64 3 1 719 322 262 60 53 chr6 17580100 17580233 -131936804 + L1MC LINE L1 5246 5379 -767 1 719 369 306 15 15 chr6 17580244 17580380 -131936657 + Lx8 LINE L1 7093 7228 -245 1 719 195 69 0 0 chr6 17580569 17580598 -131936439 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 719 434 18 18 0 chr6 17581289 17581344 -131935693 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 719 307 320 83 57 chr6 17582006 17582271 -131934766 + B4A SINE B4 3 274 -18 1 719 212 0 36 0 chr6 17582798 17582826 -131934211 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 719 199 329 0 34 chr6 17583163 17583251 -131933786 - L2c LINE L2 -11 3376 3292 1 719 215 293 74 49 chr6 17583313 17583435 -131933602 - MIRb SINE MIR -48 220 96 1 719 211 309 10 50 chr6 17583551 17583650 -131933387 + L2c LINE L2 3292 3386 -1 1 719 234 335 92 130 chr6 17583917 17584102 -131932935 + RMER15 LTR ERVL 302 479 -96 1 719 441 0 0 0 chr6 17584237 17584286 -131932751 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 719 536 286 9 0 chr6 17584288 17584400 -131932637 - RSINE1 SINE B4 -47 118 6 1 719 892 153 206 0 chr6 17584469 17584639 -131932398 + B3 SINE B2 2 206 -10 1 719 21 36 0 0 chr6 17584838 17584866 -131932171 + AT_rich Low_complexity Low_complexity 1 28 0 1 719 427 287 23 8 chr6 17585979 17586109 -131930928 + MER5A1 DNA MER1_type 11 142 -24 1 719 490 219 158 7 chr6 17586168 17586320 -131930717 + MER53 DNA hAT 1 175 -18 1 719 29 78 0 0 chr6 17586984 17587048 -131929989 + GC_rich Low_complexity Low_complexity 1 64 0 1 719 33 90 0 0 chr6 17587363 17587452 -131929585 + GC_rich Low_complexity Low_complexity 1 89 0 1 719 208 338 154 28 chr6 17589180 17589329 -131927708 - MIRb SINE MIR -99 169 1 1 719 299 313 17 12 chr6 17589579 17589674 -131927363 + PB1D10 SINE Alu 1 105 -22 1 719 379 190 178 23 chr6 17589686 17589815 -131927222 + B1F SINE Alu 1 149 0 1 719 407 299 94 23 chr6 17590199 17590370 -131926667 - ID_B1 SINE B4 -40 184 2 1 719 529 182 47 16 chr6 17591042 17591181 -131925856 + B3 SINE B2 30 210 -6 1 719 252 0 0 0 chr6 17591577 17591605 -131925432 + (T)n Simple_repeat Simple_repeat 1 28 0 1 719 26 0 0 0 chr6 17591630 17591656 -131925381 + AT_rich Low_complexity Low_complexity 1 26 0 1 719 216 366 84 0 chr6 17592106 17592177 -131924860 + ID4_ SINE ID 3 79 -4 1 719 396 301 116 7 chr6 17592493 17592640 -131924397 + RSINE1 SINE B4 3 165 0 1 719 24 0 0 0 chr6 17592651 17592675 -131924362 + AT_rich Low_complexity Low_complexity 1 24 0 1 719 400 295 117 29 chr6 17592696 17592902 -131924135 - RMER15 LTR ERVL 0 575 352 1 719 849 291 175 17 chr6 17594124 17594540 -131922497 - Lx8 LINE L1 -378 7095 6614 1 719 693 232 284 27 chr6 17595281 17595573 -131921464 - ORR1D2 LTR MaLR -3 367 1 1 719 394 308 15 8 chr6 17595688 17595819 -131921218 + MLT2B2 LTR ERVL 420 551 -11 1 719 1025 257 99 33 chr6 17596409 17596803 -131920234 - Lx8 LINE L1 -285 7188 6769 1 719 254 244 13 127 chr6 17596903 17597053 -131919984 - L1MD1 LINE L1 -74 6105 5973 1 719 581 314 244 30 chr6 17597082 17597415 -131919622 + MER47B DNA MER2_type 12 415 -3 1 719 305 255 121 47 chr6 17597464 17597667 -131919370 - L1MD1 LINE L1 -277 5902 5648 1 719 297 0 0 0 chr6 17597667 17597700 -131919337 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 719 277 291 178 44 chr6 17597700 17598064 -131918973 - L1MD1 LINE L1 -532 5647 5260 1 719 394 203 183 28 chr6 17598624 17598766 -131918271 - RSINE1 SINE B4 0 165 2 1 719 533 120 119 8 chr6 17599198 17599316 -131917721 - B2_Mm2 SINE B2 -2 193 63 1 719 2582 143 69 17 chr6 17599305 17599766 -131917271 - RLTR20B2 LTR ERVK -73 487 3 1 719 700 67 0 0 chr6 17599769 17599858 -131917179 - B2_Mm2 SINE B2 -106 89 1 1 719 471 295 95 72 chr6 17600432 17600695 -131916342 + B4A SINE B4 20 288 -4 1 719 532 327 75 10 chr6 17601386 17601587 -131915450 - B3A SINE B2 0 216 3 1 719 196 267 117 0 chr6 17601631 17601691 -131915346 - MIR3 SINE MIR -27 181 115 1 719 886 293 149 22 chr6 17602039 17602360 -131914677 - ORR1E LTR MaLR 0 370 9 1 719 26 30 0 0 chr6 17602558 17602591 -131914446 + AT_rich Low_complexity Low_complexity 1 33 0 1 719 474 331 6 63 chr6 17602957 17603131 -131913906 + RSINE1 SINE B4 2 165 0 1 719 810 325 49 0 chr6 17603318 17603583 -131913454 - B4A SINE B4 -8 284 7 1 719 252 185 55 18 chr6 17604721 17604776 -131912261 + RSINE1 SINE B4 3 59 -106 1 719 486 0 0 0 chr6 17605497 17605551 -131911486 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 719 225 0 0 0 chr6 17605693 17605718 -131911319 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 719 294 29 0 0 chr6 17607676 17607711 -131909326 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 719 310 276 37 37 chr6 17608522 17608631 -131908406 + PB1D10 SINE Alu 2 110 -7 1 719 1588 21 0 72 chr6 17608649 17608856 -131908181 - B2_Mm1a SINE B2 -1 192 1 2 719 233 119 0 23 chr6 17609164 17609207 -131907830 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 719 446 236 256 20 chr6 17609926 17610121 -131906916 + B4 SINE B4 46 286 -6 2 719 479 111 211 0 chr6 17610175 17610265 -131906772 + B1_Mur2 SINE Alu 30 138 -11 2 719 403 335 37 49 chr6 17610293 17610456 -131906581 + RSINE1 SINE B4 3 163 -2 2 719 305 301 124 0 chr6 17611449 17611562 -131905475 + MIR SINE MIR 13 139 -123 2 719 484 243 40 34 chr6 17611822 17611971 -131905066 - ORR1D2 LTR MaLR 0 370 221 2 719 468 287 184 43 chr6 17612379 17612820 -131904217 - L1MB8 LINE L1 -209 5969 5467 2 719 403 165 4 30 chr6 17612820 17612924 -131904113 - ORR1D1 LTR MaLR -8 411 305 2 719 1160 233 67 12 chr6 17612927 17613257 -131903780 - ORR1D1 LTR MaLR -26 348 1 2 719 931 220 78 34 chr6 17613257 17613521 -131903516 - MTD LTR MaLR -97 322 47 2 719 760 210 91 27 chr6 17613521 17613707 -131903330 - B3 SINE B2 -18 198 1 2 719 851 189 7 7 chr6 17613817 17613966 -131903071 - B1_Mur3 SINE Alu 0 149 1 2 719 234 218 110 52 chr6 17613969 17614124 -131902913 - L1MB8 LINE L1 -923 5223 5060 2 719 249 33 0 0 chr6 17614161 17614191 -131902846 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 719 1099 76 13 0 chr6 17614191 17614349 -131902688 - B2_Mm1a SINE B2 -33 160 1 2 719 762 207 14 41 chr6 17614752 17614898 -131902139 - B1_Mur2 SINE Alu -7 142 1 2 719 212 291 37 25 chr6 17614932 17615013 -131902024 + BC1_Mm scRNA scRNA 18 99 -53 2 719 273 57 0 0 chr6 17615665 17615700 -131901337 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 719 211 308 214 8 chr6 17617295 17617426 -131899611 - L2 LINE L2 -683 2736 2579 2 719 1635 89 52 37 chr6 17617453 17617721 -131899316 - Lx3B LINE L1 -1 6972 6701 2 719 656 163 59 7 chr6 17618147 17618283 -131898754 + URR1B DNA MER1_type 83 225 0 2 719 639 148 108 15 chr6 17619129 17619259 -131897778 - B1_Mus2 SINE Alu -5 142 1 2 719 358 303 94 83 chr6 17619752 17619932 -131897105 + B4A SINE B4 42 223 -69 2 719 395 311 97 32 chr6 17619974 17620160 -131896877 + B4A SINE B4 71 268 -24 2 719 216 0 0 0 chr6 17620466 17620490 -131896547 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 719 495 259 43 0 chr6 17621006 17621145 -131895892 + ID_B1 SINE B4 74 218 -6 2 719 363 290 27 80 chr6 17621323 17621412 -131895625 + ID_B1 SINE B4 82 173 -51 2 719 3253 14 0 0 chr6 17621412 17621769 -131895268 - IAPEY2_LTR LTR ERVK 0 357 1 2 719 363 290 27 80 chr6 17621769 17621829 -131895208 + ID_B1 SINE B4 174 223 -1 2 719 451 216 59 0 chr6 17621843 17621945 -131895092 + B1_Mur2 SINE Alu 13 120 -29 2 719 22 0 0 0 chr6 17622444 17622466 -131894571 + AT_rich Low_complexity Low_complexity 1 22 0 2 719 465 260 168 10 chr6 17623180 17623382 -131893655 - MLT1E LTR MaLR 0 653 420 2 719 250 219 271 34 chr6 17623577 17623695 -131893342 + MLT1J-int LTR MaLR 884 1029 -358 2 719 422 237 153 0 chr6 17623697 17623828 -131893209 - L1MA5 LINE L1 -6 6294 6144 2 719 656 66 0 0 chr6 17623844 17623935 -131893102 + RLTR15 LTR ERVK 269 359 0 2 719 619 94 17 8 chr6 17624152 17624270 -131892767 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 2 719 1557 191 171 2 chr6 17624276 17624674 -131892363 + Lx9 LINE L1 7179 7643 -1 2 719 464 187 122 0 chr6 17624723 17624830 -131892207 - RSINE1 SINE B4 -42 123 4 2 719 810 224 16 37 chr6 17624861 17625051 -131891986 + ORR1D1 LTR MaLR 1 186 -188 2 719 233 197 16 0 chr6 17625053 17625114 -131891923 + C-rich Low_complexity Low_complexity 6 67 0 2 719 610 222 123 32 chr6 17625117 17625326 -131891711 + ORR1D1 LTR MaLR 149 379 -5 2 719 225 0 0 0 chr6 17625928 17625953 -131891084 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 719 688 261 47 5 chr6 17626170 17626382 -131890655 + ID_B1 SINE B4 2 222 -2 2 719 956 321 67 28 chr6 17626484 17626919 -131890118 + Lx9 LINE L1 7072 7523 -121 2 719 290 182 54 9 chr6 17626934 17627045 -131889992 + (TA)n Simple_repeat Simple_repeat 1 116 0 2 719 964 218 19 23 chr6 17627234 17627450 -131889587 + B3 SINE B2 2 216 0 2 719 711 267 58 0 chr6 17628041 17628213 -131888824 + B3A SINE B2 1 182 -16 2 719 231 152 0 0 chr6 17628216 17628262 -131888775 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 719 591 257 183 57 chr6 17628492 17628793 -131888244 + ORR1E LTR MaLR 1 339 -20 2 719 1007 209 107 11 chr6 17629055 17629335 -131887702 - MTD LTR MaLR 0 419 113 2 719 320 214 124 67 chr6 17629617 17629722 -131887315 - MTD LTR MaLR -308 111 1 2 719 1120 239 75 45 chr6 17629724 17630083 -131886954 + ORR1D2 LTR MaLR 1 370 0 2 719 32 75 0 0 chr6 17630092 17630159 -131886878 + AT_rich Low_complexity Low_complexity 1 67 0 2 719 369 0 0 0 chr6 17630178 17630219 -131886818 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 719 243 88 0 0 chr6 17630301 17630335 -131886702 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 719 562 236 97 0 chr6 17630347 17630491 -131886546 - RSINE1 SINE B4 -4 161 4 2 719 289 201 209 121 chr6 17630568 17630817 -131886220 + L1MEc LINE L1 78 348 -6052 2 719 694 94 38 0 chr6 17631286 17631392 -131885645 + RMER6C LTR ERVK 1 110 -580 2 719 580 172 27 117 chr6 17631359 17631471 -131885566 + MT2B LTR ERVL 51 207 -394 2 719 371 304 0 67 chr6 17631471 17631591 -131885446 + B1_Mus2 SINE Alu 3 114 -33 2 719 191 154 62 0 chr6 17631600 17631665 -131885372 + (CAGTG)n Simple_repeat Simple_repeat 1 69 0 2 719 674 115 64 0 chr6 17631677 17632008 -131885029 + (CAGTG)n Simple_repeat Simple_repeat 1 352 0 2 719 258 61 61 0 chr6 17632021 17632070 -131884967 + (CAGTG)n Simple_repeat Simple_repeat 4 55 0 2 719 1439 158 21 7 chr6 17632097 17632377 -131884660 + RMER6C LTR ERVK 407 690 0 2 719 396 0 0 0 chr6 17632505 17632549 -131884488 + (TTTTC)n Simple_repeat Simple_repeat 4 47 0 2 719 1008 189 113 0 chr6 17632549 17632787 -131884250 - Lx9 LINE L1 -54 7590 7326 2 719 303 28 0 0 chr6 17633001 17633037 -131884000 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 719 508 187 122 0 chr6 17633678 17633785 -131883252 + PB1D9 SINE Alu 1 120 0 2 719 2115 178 37 32 chr6 17634125 17634590 -131882447 + RLTR19 LTR ERVK 10 476 -23 2 719 1177 185 45 85 chr6 17634592 17634721 -131882316 + ORR1B1 LTR MaLR 47 152 -242 2 719 468 0 0 0 chr6 17634721 17634773 -131882264 + (CAAAA)n Simple_repeat Simple_repeat 1 52 0 2 719 1380 129 0 0 chr6 17634773 17634997 -131882040 + ORR1A3 LTR MaLR 95 318 -8 2 719 270 125 21 0 chr6 17634993 17635041 -131881996 + RLTR19 LTR ERVK 667 715 0 2 719 613 11 53 0 chr6 17635090 17635184 -131881853 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 719 961 97 15 0 chr6 17635554 17635688 -131881349 - B1_Mus1 SINE Alu -12 136 1 2 719 1141 264 23 77 chr6 17635726 17636165 -131880872 - Lx5 LINE L1 -1 7049 6635 2 719 267 31 0 0 chr6 17636237 17636269 -131880768 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 2 719 555 175 111 0 chr6 17636272 17636398 -131880639 - B1_Mus1 SINE Alu -3 145 6 2 719 706 250 16 22 chr6 17637198 17637382 -131879655 - B3A SINE B2 -13 185 3 2 719 480 296 0 0 chr6 17637911 17638026 -131879011 + RSINE1 SINE B4 10 124 -41 2 719 183 80 0 0 chr6 17638026 17638051 -131878986 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 719 3054 63 17 15 chr6 17638133 17638537 -131878500 + Lx3_Mus LINE L1 6559 6963 -46 2 719 273 29 0 0 chr6 17638789 17638823 -131878214 + (TGAG)n Simple_repeat Simple_repeat 3 36 0 2 719 405 58 0 0 chr6 17638823 17638874 -131878163 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 719 1107 80 0 0 chr6 17639503 17639640 -131877397 + B1_Mus1 SINE Alu 2 138 -10 2 719 244 147 43 14 chr6 17639654 17639723 -131877314 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 2 719 503 260 9 34 chr6 17640286 17640443 -131876594 + B4 SINE B4 2 152 -72 2 719 809 215 161 40 chr6 17640468 17640723 -131876314 - ORR1D1 LTR MaLR -30 344 40 2 719 225 0 0 0 chr6 17640723 17640748 -131876289 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2 719 1068 90 7 20 chr6 17640749 17640897 -131876140 - B1_Mus1 SINE Alu -1 147 2 2 719 542 258 202 26 chr6 17640897 17640928 -131876109 - ORR1D1 LTR MaLR -328 39 1 2 719 249 217 0 0 chr6 17640928 17640973 -131876064 + B4 SINE B4 240 284 -8 2 719 804 277 104 48 chr6 17642139 17642534 -131874503 - Ricksha_c DNA MuDR -1217 831 415 2 719 264 238 0 101 chr6 17643085 17643174 -131873863 - LTR48 LTR ERV1 -700 87 8 2 719 23 78 0 0 chr6 17644085 17644136 -131872901 + GC_rich Low_complexity Low_complexity 1 51 0 2 719 231 88 0 0 chr6 17644366 17644400 -131872637 + (CCCGG)n Simple_repeat Simple_repeat 4 37 0 2 719 23 78 0 0 chr6 17644435 17644486 -131872551 + GC_rich Low_complexity Low_complexity 1 51 0 2 719 603 127 207 53 chr6 17645533 17645683 -131871354 + URR1A DNA MER1_type 7 179 -47 2 719 276 138 46 0 chr6 17646657 17646722 -131870315 + CT-rich Low_complexity Low_complexity 2 69 0 2 719 388 236 43 43 chr6 17646742 17646857 -131870180 - PB1D9 SINE Alu 0 120 6 2 719 7679 213 63 29 chr6 17647120 17648918 -131868119 - Lx6 LINE L1 -11 7449 5568 2 719 1349 103 11 0 chr6 17648918 17649103 -131867934 - B2_Mm1t SINE B2 -6 187 1 2 719 5596 167 11 39 chr6 17649103 17649884 -131867153 - Lx6 LINE L1 -313 5567 4806 2 719 634 212 60 18 chr6 17649885 17650053 -131866984 + ORR1B1-int LTR MaLR 30 204 -1305 2 719 1251 181 3 70 chr6 17650043 17650328 -131866709 - ORR1B1 LTR MaLR -88 306 41 2 719 837 163 14 0 chr6 17650334 17650475 -131866562 - Lx6 LINE L1 -3944 1936 1794 2 719 1696 226 107 34 chr6 17650538 17651155 -131865882 - Lx6 LINE L1 -6495 1233 572 2 719 2186 33 41 0 chr6 17652565 17652836 -131864201 - L1Md_F2 LINE L1 0 6582 6301 2 719 939 65 0 0 chr6 17653856 17653979 -131863058 + (TTTTC)n Simple_repeat Simple_repeat 2 124 0 2 719 1772 94 15 4 chr6 17653982 17654248 -131862789 - ORR1A2 LTR MaLR -58 269 1 2 719 1753 104 14 7 chr6 17654248 17654538 -131862499 - ORR1A2-int LTR MaLR 0 1963 1672 2 719 2080 146 62 52 chr6 17654547 17655105 -131861932 - L1Md_F2 LINE L1 0 6638 6095 2 719 648 72 12 0 chr6 17655100 17655183 -131861854 + L1Md_F2 LINE L1 6025 6108 -476 2 719 7655 144 81 48 chr6 17655185 17655803 -131861234 - ORR1A3-int LTR MaLR -279 1684 1071 2 719 1152 56 28 0 chr6 17655803 17655947 -131861090 + B1_Mus1 SINE Alu 1 148 0 3 719 7655 144 81 48 chr6 17655947 17656957 -131860080 - ORR1A3-int LTR MaLR -893 1070 2 2 719 508 56 42 0 chr6 17656962 17657033 -131860004 - ORR1A3 LTR MaLR -8 318 245 2 719 792 106 32 8 chr6 17657033 17657157 -131859880 - MT2C_Mm LTR ERVL -78 397 271 3 719 1200 55 0 0 chr6 17657170 17657315 -131859722 + B1_Mus2 SINE Alu 3 147 0 3 719 208 139 0 0 chr6 17657315 17657351 -131859686 + (CAAAC)n Simple_repeat Simple_repeat 5 40 0 3 719 1613 27 11 0 chr6 17657356 17657540 -131859497 + B2_Mm1a SINE B2 2 187 -6 3 719 1284 213 159 11 chr6 17657554 17657919 -131859118 - MTD LTR MaLR 0 419 1 3 719 835 215 65 20 chr6 17657920 17658119 -131858918 - B3 SINE B2 -7 209 2 3 719 1137 76 7 0 chr6 17658313 17658458 -131858579 - B1_Mus2 SINE Alu 0 147 2 3 719 200 191 24 0 chr6 17658501 17658557 -131858480 + L2a LINE L2 3246 3353 -73 3 719 269 317 9 9 chr6 17663733 17663838 -131853199 - PB1D10 SINE Alu -1 116 12 3 719 239 159 0 0 chr6 17664579 17664618 -131852419 - MTD LTR MaLR -8 411 373 3 719 2167 128 67 18 chr6 17664618 17665163 -131851874 - RMER6D LTR ERVK 0 720 4 3 719 1075 234 25 1 chr6 17665231 17665493 -131851544 - MTD LTR MaLR -113 306 1 3 719 1926 216 211 70 chr6 17665825 17665983 -131851054 + Lx9 LINE L1 5640 5838 -1635 3 719 1496 84 5 0 chr6 17665983 17666173 -131850864 + B2_Mm1t SINE B2 2 192 -1 3 719 2068 288 71 31 chr6 17666173 17667142 -131849895 + Lx9 LINE L1 5839 7000 -644 3 719 206 83 0 53 chr6 17667142 17667180 -131849857 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 3 719 1170 76 0 0 chr6 17667236 17667393 -131849644 + B2_Mm2 SINE B2 2 158 -37 3 719 180 0 0 0 chr6 17667394 17667414 -131849623 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 3 719 414 0 0 0 chr6 17667490 17667536 -131849501 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 719 513 47 0 0 chr6 17667536 17667599 -131849438 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 719 789 205 38 6 chr6 17667620 17667777 -131849260 - ORR1C1 LTR MaLR -216 162 1 3 719 607 243 144 63 chr6 17668074 17668408 -131848629 - L1MC3 LINE L1 -1 7784 7424 3 719 281 209 31 62 chr6 17668529 17668626 -131848411 - L1MC3 LINE L1 -562 7223 7130 3 719 710 292 119 19 chr6 17668643 17668954 -131848083 - MER89 LTR ERV1 -3 556 215 3 719 293 222 131 42 chr6 17668976 17669097 -131847940 - MLT1A0 LTR MaLR -35 355 215 3 719 348 367 15 55 chr6 17669500 17669699 -131847338 + MER20B DNA MER1_type 361 551 -232 3 719 22 0 0 0 chr6 17669998 17670020 -131847017 + AT_rich Low_complexity Low_complexity 1 22 0 3 719 297 267 17 0 chr6 17670140 17670200 -131846837 + RSINE1 SINE B4 89 149 -16 3 719 309 26 0 0 chr6 17670520 17670558 -131846479 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 719 305 261 0 14 chr6 17671382 17671452 -131845585 + ID4_ SINE ID 1 69 -14 3 719 190 300 162 0 chr6 17671871 17671951 -131845086 + L2 LINE L2 2717 2809 -610 3 719 507 316 100 42 chr6 17672596 17673147 -131843890 - L1MC4 LINE L1 -196 7846 7264 3 719 396 311 98 0 chr6 17673249 17673371 -131843666 - B1F SINE Alu -14 135 2 3 719 297 275 69 48 chr6 17673446 17673591 -131843446 - B1F1 SINE Alu 0 149 2 3 719 236 302 68 54 chr6 17673662 17673809 -131843228 - L1MC4 LINE L1 -1089 6793 6645 3 719 198 118 0 0 chr6 17673809 17673843 -131843194 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 3 719 202 164 98 0 chr6 17673851 17673912 -131843125 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 3 719 306 213 214 36 chr6 17673972 17674084 -131842953 - L1MC4 LINE L1 -1436 6606 6475 3 719 1854 147 80 12 chr6 17674348 17674685 -131842352 - ORR1B2 LTR MaLR -7 360 1 3 719 279 0 0 0 chr6 17675312 17675343 -131841694 + (T)n Simple_repeat Simple_repeat 1 31 0 3 719 246 282 118 37 chr6 17675828 17675964 -131841073 + MIRb SINE MIR 63 209 -59 3 719 585 258 0 0 chr6 17677722 17677885 -131839152 + GA-rich Low_complexity Low_complexity 1 163 0 3 719 686 211 35 7 chr6 17678055 17678198 -131838839 + B1_Mur3 SINE Alu 1 147 -2 3 719 612 314 28 23 chr6 17678277 17678492 -131838545 + B4A SINE B4 2 217 -75 3 719 471 280 161 25 chr6 17678517 17678678 -131838359 - B4A SINE B4 -49 243 61 3 719 227 245 170 60 chr6 17678625 17678725 -131838312 - B3A SINE B2 -87 111 1 3 719 587 250 107 20 chr6 17679341 17679594 -131837443 + L1M3 LINE L1 5410 5684 -484 3 719 26 50 0 0 chr6 17679602 17679642 -131837395 + AT_rich Low_complexity Low_complexity 1 40 0 3 719 345 47 0 0 chr6 17679642 17679685 -131837352 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 719 322 256 0 23 chr6 17680064 17680152 -131836885 + Tigger10 DNA Tigger 1216 1301 -542 3 719 503 241 75 54 chr6 17680201 17680403 -131836634 - B3A SINE B2 -10 206 3 3 719 1949 78 4 4 chr6 17680418 17680688 -131836349 - L1_Mus1 LINE L1 0 6567 6298 3 719 275 304 22 0 chr6 17680737 17680829 -131836208 - PB1D7 SINE Alu -26 94 1 3 719 567 66 0 0 chr6 17682446 17682522 -131834515 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 3 719 2289 234 31 8 chr6 17682843 17683365 -131833672 - Lx5 LINE L1 -5 7045 6512 3 719 238 211 0 19 chr6 17683802 17683855 -131833182 + B1_Mm SINE Alu 95 146 -1 3 719 1903 266 71 30 chr6 17683875 17684483 -131832554 + RMER1C Other Other 554 1186 -156 3 719 1455 189 142 5 chr6 17684713 17685080 -131831957 - MTD LTR MaLR 0 419 3 3 719 222 209 46 11 chr6 17685671 17685758 -131831279 + CT-rich Low_complexity Low_complexity 3 92 0 3 719 363 136 0 0 chr6 17686149 17686208 -131830829 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 719 565 260 28 88 chr6 17686209 17686424 -131830613 - B3 SINE B2 -14 202 1 3 719 207 0 0 0 chr6 17686441 17686464 -131830573 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 3 719 2977 231 27 6 chr6 17686465 17687139 -131829898 - Lx5 LINE L1 -16 7034 6347 3 719 933 233 21 34 chr6 17687146 17687381 -131829656 + Lx5 LINE L1 6094 6325 -725 3 719 25 0 0 0 chr6 17688322 17688347 -131828690 + AT_rich Low_complexity Low_complexity 1 25 0 3 719 633 14 0 0 chr6 17688432 17688506 -131828531 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 3 719 29 60 0 0 chr6 17688549 17688599 -131828438 + AT_rich Low_complexity Low_complexity 1 50 0 3 719 23 33 0 0 chr6 17688833 17688863 -131828174 + AT_rich Low_complexity Low_complexity 1 30 0 3 719 457 308 124 5 chr6 17690800 17691002 -131826035 + MER58B DNA MER1_type 115 340 -1 3 719 534 229 66 44 chr6 17692572 17692709 -131824328 + B1_Mur1 SINE Alu 9 148 -1 3 719 913 88 15 0 chr6 17692901 17693038 -131823999 + B1_Mur4 SINE Alu 6 144 -6 3 719 216 0 0 0 chr6 17693534 17693558 -131823479 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 719 195 235 0 0 chr6 17694085 17694136 -131822901 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 719 288 0 0 0 chr6 17694361 17694393 -131822644 + (T)n Simple_repeat Simple_repeat 1 32 0 3 719 1223 48 0 0 chr6 17694393 17694540 -131822497 - B1_Mus2 SINE Alu 0 147 1 3 719 270 0 0 0 chr6 17694583 17694613 -131822424 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 719 251 269 73 15 chr6 17694620 17694688 -131822349 - RSINE1 SINE B4 -13 152 81 3 720 186 192 123 88 chr6 17695428 17695485 -131821552 + L2a LINE L2 3087 3145 -281 3 720 213 121 0 0 chr6 17697265 17697298 -131819739 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 3 720 356 319 96 18 chr6 17697644 17697870 -131819167 + MIR SINE MIR 13 262 0 3 720 180 0 0 0 chr6 17700125 17700145 -131816892 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 720 21 57 0 0 chr6 17700802 17700837 -131816200 + AT_rich Low_complexity Low_complexity 1 35 0 3 720 342 100 0 0 chr6 17701216 17701276 -131815761 + (T)n Simple_repeat Simple_repeat 1 60 0 3 720 1344 174 50 14 chr6 17701754 17702051 -131814986 - Lx9 LINE L1 -13 7631 7324 3 720 301 337 54 18 chr6 17702070 17702236 -131814801 - L1ME3 LINE L1 -25 6137 5966 3 720 3336 66 0 2 chr6 17702511 17702936 -131814101 - L1_Mus1 LINE L1 0 6567 6144 3 720 228 35 0 0 chr6 17703565 17703594 -131813443 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 3 720 624 14 0 0 chr6 17703955 17704028 -131813009 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 720 670 379 26 20 chr6 17707281 17707631 -131809406 - MLT1G3 LTR MaLR -243 352 1 3 720 591 284 58 5 chr6 17707928 17708133 -131808904 - B3 SINE B2 0 216 1 3 720 231 280 27 0 chr6 17708553 17708628 -131808409 - ID4 SINE ID -6 77 1 3 720 389 300 112 13 chr6 17708674 17708985 -131808052 - L1M4 LINE L1 -577 5597 5256 3 720 267 104 0 0 chr6 17710520 17710568 -131806469 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 720 1086 192 82 0 chr6 17710702 17710910 -131806127 + URR1B DNA MER1_type 1 225 0 3 720 192 368 8 8 chr6 17711185 17711303 -131805734 + L2 LINE L2 2841 2958 -461 3 720 180 320 169 59 chr6 17711589 17711725 -131805312 + MIRc SINE MIR 2 152 -116 3 720 222 37 0 0 chr6 17712139 17712166 -131804871 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 720 501 17 0 0 chr6 17712421 17712479 -131804558 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 720 412 280 62 23 chr6 17712481 17712609 -131804428 - RSINE1 SINE B4 -30 135 3 3 720 216 0 0 0 chr6 17712858 17712882 -131804155 + (T)n Simple_repeat Simple_repeat 1 24 0 3 720 454 185 15 40 chr6 17716895 17717003 -131800034 - B1_Mus2 SINE Alu -1 146 15 3 720 397 194 21 0 chr6 17717031 17717124 -131799913 - Lx9 LINE L1 -7 7637 7543 3 720 1387 199 125 42 chr6 17717253 17717589 -131799448 + ORR1D1 LTR MaLR 11 374 0 3 720 225 307 32 64 chr6 17718028 17718122 -131798915 - MLT1A0 LTR MaLR -18 347 257 3 720 320 332 110 113 chr6 17718387 17718669 -131798368 + MLT1D LTR MaLR 31 311 -194 3 720 695 302 32 0 chr6 17718753 17718942 -131798095 + B3A SINE B2 1 195 -3 4 720 1543 52 0 5 chr6 17719103 17719297 -131797740 - B2_Mm2 SINE B2 -1 194 2 4 720 3458 32 2 0 chr6 17719307 17719753 -131797284 - L1Md_T LINE L1 0 6582 6171 4 720 225 175 14 113 chr6 17720769 17720840 -131796197 - RMER15 LTR ERVL -109 466 403 4 720 28 0 0 0 chr6 17721365 17721393 -131795644 + AT_rich Low_complexity Low_complexity 1 28 0 4 720 213 282 50 25 chr6 17721502 17721582 -131795455 + ID4 SINE ID 2 83 0 4 720 552 15 0 0 chr6 17721728 17721793 -131795244 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 720 822 142 82 0 chr6 17721839 17721973 -131795064 - B1_Mur3 SINE Alu -4 145 1 4 720 182 338 61 20 chr6 17722471 17722619 -131794418 + L2 LINE L2 2908 3061 -358 4 720 243 0 0 0 chr6 17722954 17722981 -131794056 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 720 252 0 0 0 chr6 17722981 17723008 -131794029 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 720 2508 141 51 2 chr6 17723385 17723797 -131793240 - RMER21A LTR ERV1 0 947 516 4 720 2125 179 123 62 chr6 17723959 17724489 -131792548 - RMER21A LTR ERV1 -385 562 1 4 720 1516 281 54 11 chr6 17725874 17726317 -131790720 - Lx6 LINE L1 -14 7446 6985 4 720 412 282 49 0 chr6 17727255 17727397 -131789640 - L1M2 LINE L1 -1204 4939 4791 4 720 2721 104 5 8 chr6 17727405 17727781 -131789256 - L1_Mus4 LINE L1 -2 6634 6260 4 720 316 217 110 104 chr6 17727781 17727935 -131789102 - L1M2 LINE L1 -1735 4408 4254 4 720 228 137 0 0 chr6 17727937 17727988 -131789049 + (T)n Simple_repeat Simple_repeat 1 51 0 4 720 323 294 162 14 chr6 17728337 17728485 -131788552 + B4A SINE B4 117 286 -6 4 720 486 240 77 0 chr6 17728985 17729089 -131787948 - B3A SINE B2 -81 117 6 4 720 2280 144 31 3 chr6 17729213 17729596 -131787441 + ORR1B1 LTR MaLR 1 394 0 4 720 308 243 40 26 chr6 17729596 17729672 -131787365 - ID_B1 SINE B4 -69 155 79 4 720 1215 208 10 0 chr6 17731144 17731351 -131785686 - B3 SINE B2 -7 209 1 4 720 469 209 28 37 chr6 17731447 17731556 -131785481 - L1MB1 LINE L1 -245 5923 5816 4 720 281 43 83 42 chr6 17731566 17731614 -131785423 - MT2B LTR ERVL 0 584 535 4 720 1130 218 80 47 chr6 17731678 17732033 -131785004 - MT2B LTR ERVL -71 530 1 4 720 337 208 56 56 chr6 17731937 17732044 -131784993 - ORR1A3-int LTR MaLR -1256 707 601 4 720 380 259 14 56 chr6 17732044 17732187 -131784850 - L1MB1 LINE L1 -373 5798 5662 4 720 306 224 17 0 chr6 17732228 17732286 -131784751 - B1F SINE Alu -75 74 16 4 720 286 244 89 13 chr6 17732707 17732786 -131784251 + L1M5 LINE L1 5599 5683 -441 4 720 369 0 0 0 chr6 17735809 17735850 -131781187 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 720 205 193 0 34 chr6 17736445 17736481 -131780556 + polypurine Low_complexity Low_complexity 6 39 0 4 720 180 0 0 0 chr6 17736481 17736501 -131780536 + (CAGAGA)n Simple_repeat Simple_repeat 5 24 0 4 720 205 193 0 34 chr6 17736501 17736523 -131780514 + polypurine Low_complexity Low_complexity 40 61 0 4 720 1562 170 22 0 chr6 17736574 17736844 -131780193 + MTC LTR MaLR 146 421 0 4 720 1770 149 166 9 chr6 17736920 17737251 -131779786 - ORR1C2 LTR MaLR -1 383 1 4 720 228 43 0 61 chr6 17737326 17737375 -131779662 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 4 720 267 344 161 15 chr6 17737617 17737914 -131779123 + L2b LINE L2 2796 3138 -237 4 720 1473 160 51 0 chr6 17737929 17738204 -131778833 + RMER1C Other Other 1046 1334 -8 4 720 1268 251 132 6 chr6 17738351 17738625 -131778412 - MTEb LTR MaLR 0 379 77 4 720 243 0 0 0 chr6 17738625 17738652 -131778385 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 720 1268 251 132 6 chr6 17738652 17738689 -131778348 - MTEb LTR MaLR -303 76 28 4 720 1038 260 68 25 chr6 17738689 17738969 -131778068 + B4A SINE B4 1 292 0 4 720 203 314 0 0 chr6 17739152 17739203 -131777834 + L2b LINE L2 3375 3425 -1 4 720 1328 279 89 25 chr6 17739217 17739766 -131777271 - L1MB7 LINE L1 -1 6183 5600 4 720 832 289 54 84 chr6 17739819 17740092 -131776945 - B4A SINE B4 -2 290 26 4 720 1334 240 111 3 chr6 17740092 17740426 -131776611 - ORR1D2 LTR MaLR 0 370 1 4 720 832 289 54 84 chr6 17740426 17740450 -131776587 - B4A SINE B4 -267 25 2 4 720 233 338 79 61 chr6 17740581 17740745 -131776292 - MER31B LTR ERV1 -287 179 13 4 720 495 107 0 0 chr6 17740931 17741006 -131776031 + (TCCC)n Simple_repeat Simple_repeat 1 75 0 4 720 232 263 18 0 chr6 17741188 17741245 -131775792 + CT-rich Low_complexity Low_complexity 1 58 0 4 720 460 286 125 52 chr6 17744215 17744365 -131772672 - RMER10A LTR ERVL -19 423 270 4 720 711 48 19 9 chr6 17744365 17744470 -131772567 + (GAGAA)n Simple_repeat Simple_repeat 4 109 0 4 720 460 286 125 52 chr6 17744470 17744702 -131772335 - RMER10A LTR ERVL -173 269 13 4 720 4894 52 2 3 chr6 17744705 17745283 -131771754 - L1Md_F2 LINE L1 0 6582 6006 4 720 4134 67 2 8 chr6 17746075 17746586 -131770451 - L1Md_F2 LINE L1 -1 6581 6074 4 720 2571 53 19 0 chr6 17746586 17746907 -131770130 + L1Md_F2 LINE L1 5733 6059 -523 4 720 294 313 111 0 chr6 17749086 17749185 -131767852 - PB1D10 SINE Alu -5 112 3 4 720 237 278 106 43 chr6 17749106 17749200 -131767837 - ID_B1 SINE B4 -52 172 73 4 720 1295 27 0 20 chr6 17749356 17749506 -131767531 - B1_Mus1 SINE Alu 0 148 2 4 720 298 319 107 71 chr6 17749618 17749898 -131767139 - MLT2C1 LTR ERVL -14 383 94 4 720 279 0 0 0 chr6 17750634 17750665 -131766372 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 720 809 183 159 50 chr6 17751065 17751266 -131765771 + URR1B DNA MER1_type 1 223 -2 4 720 6305 50 2 50 chr6 17751289 17752085 -131764952 - L1_Mus3 LINE L1 -12 6626 5869 4 720 913 188 72 45 chr6 17752251 17752474 -131764563 + ORR1D1 LTR MaLR 1 229 -145 4 720 1636 171 18 11 chr6 17752491 17752763 -131764274 + ORR1D1 LTR MaLR 1 274 -100 4 720 3631 63 13 0 chr6 17752763 17753221 -131763816 - MMERVK10C-int LTR ERVK -474 7206 6743 4 720 3666 77 0 2 chr6 17753208 17753666 -131763371 - MMERVK10C-int LTR ERVK -1364 6217 5761 4 720 3296 95 2 18 chr6 17753654 17754103 -131762934 - MMERVK10C-int LTR ERVK -1936 5645 5204 4 720 202 289 99 11 chr6 17754616 17754707 -131762330 + MIRb SINE MIR 65 163 -105 4 720 773 214 99 45 chr6 17755242 17755443 -131761594 + B3 SINE B2 2 213 -3 4 720 306 0 0 0 chr6 17755841 17755875 -131761162 + (TTA)n Simple_repeat Simple_repeat 3 36 0 4 720 354 115 6 116 chr6 17756031 17756117 -131760920 + B3 SINE B2 1 121 -95 4 720 302 329 96 0 chr6 17756405 17756572 -131760465 + L1ME4a LINE L1 5714 5896 -228 4 720 243 364 82 25 chr6 17756985 17757230 -131759807 + MIRb SINE MIR 1 259 -9 4 720 1628 71 5 37 chr6 17757498 17757644 -131759393 - L1_Mus1 LINE L1 -1 6566 6422 4 720 3719 20 2 0 chr6 17757644 17758039 -131758998 + MTA_Mm LTR MaLR 1 396 0 4 720 10116 20 2 0 chr6 17758039 17759135 -131757902 + MTA_Mm-int LTR MaLR 1 1098 0 4 720 3719 20 2 0 chr6 17759135 17759530 -131757507 + MTA_Mm LTR MaLR 1 396 0 4 720 1628 71 5 37 chr6 17759530 17759599 -131757438 - L1_Mus1 LINE L1 -146 6421 6358 4 720 3153 70 0 8 chr6 17759599 17759990 -131757047 + L1_Mm LINE L1 5371 5758 -125 4 720 858 77 17 0 chr6 17760155 17760287 -131756750 + B1_Mus1 SINE Alu 2 145 -5 4 720 182 37 37 0 chr6 17760288 17760315 -131756722 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 4 720 554 278 57 40 chr6 17760325 17760501 -131756536 + B3A SINE B2 5 183 -15 4 720 321 159 0 0 chr6 17760501 17760564 -131756473 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 720 302 270 65 14 chr6 17760978 17761117 -131755920 - L1M2 LINE L1 -971 5172 5027 4 720 4235 173 36 9 chr6 17761129 17761923 -131755114 - RLTR40 LTR ERVK 0 817 2 4 720 288 336 8 15 chr6 17761982 17762115 -131754922 - L1M2 LINE L1 -1347 4796 4665 4 720 275 248 156 62 chr6 17762948 17763172 -131753865 + RLTR42-int LTR ERVK 1148 1392 -4130 4 720 219 171 24 0 chr6 17763628 17763669 -131753368 + GA-rich Low_complexity Low_complexity 1 42 0 4 720 351 239 14 0 chr6 17764446 17764517 -131752520 + ID4 SINE ID 12 83 0 4 720 441 0 0 0 chr6 17764814 17764863 -131752174 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 720 24 0 0 0 chr6 17764968 17764992 -131752045 + AT_rich Low_complexity Low_complexity 1 24 0 4 720 187 382 53 68 chr6 17765779 17765838 -131751199 + L2b LINE L2 3210 3339 -36 4 720 237 347 96 14 chr6 17765838 17765911 -131751126 + MIRm SINE MIR 164 242 -34 4 720 282 85 21 0 chr6 17766381 17766428 -131750609 - Lx9 LINE L1 -8 7636 7589 4 720 189 0 0 0 chr6 17767695 17767716 -131749321 + (T)n Simple_repeat Simple_repeat 1 21 0 4 720 437 138 26 103 chr6 17767716 17767910 -131749127 - RMER17C LTR ERVK -135 275 97 4 720 1366 166 148 11 chr6 17767919 17768242 -131748795 - MTC LTR MaLR -2 419 51 4 720 2581 261 29 8 chr6 17768252 17768879 -131748158 - Lx8 LINE L1 -235 7238 6599 4 720 241 312 117 0 chr6 17769040 17769117 -131747920 + B3A SINE B2 4 89 -109 4 720 263 122 20 0 chr6 17769121 17769170 -131747867 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 720 272 290 0 0 chr6 17769614 17769676 -131747361 + ID4 SINE ID 15 76 -7 4 720 343 216 83 109 chr6 17770614 17770806 -131746231 + Charlie18a DNA MER1_type 69 255 -87 4 720 342 0 0 0 chr6 17771733 17771771 -131745266 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 720 189 245 0 0 chr6 17773045 17773094 -131743943 + CT-rich Low_complexity Low_complexity 4 52 0 4 720 849 93 18 30 chr6 17773099 17773146 -131743891 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 4 720 1016 64 6 44 chr6 17773146 17773327 -131743710 + (TTTCC)n Simple_repeat Simple_repeat 5 178 0 4 720 849 93 18 30 chr6 17773327 17773446 -131743591 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 4 720 735 193 23 0 chr6 17773403 17773579 -131743458 + CT-rich Low_complexity Low_complexity 1 180 0 4 720 1780 93 128 22 chr6 17773579 17773898 -131743139 - RLTR23 LTR ERV1 -77 353 1 4 720 553 307 19 62 chr6 17774041 17774064 -131742973 - MURVY-int LTR ERV1 -159 7293 7204 4 720 660 293 29 16 chr6 17774064 17774310 -131742727 - RNERVK23-int LTR ERVK -558 7659 7411 4 720 553 307 19 62 chr6 17774310 17774361 -131742676 - MURVY-int LTR ERV1 -159 7203 6988 4 720 1791 331 84 64 chr6 17774894 17777414 -131739623 - MuRRS4-int LTR ERV1 -1999 5602 1934 4 720 911 261 9 19 chr6 17777917 17778128 -131738909 - B3 SINE B2 -7 209 1 4 720 271 195 24 12 chr6 17778690 17778773 -131738264 + CT-rich Low_complexity Low_complexity 2 85 0 5 720 219 222 0 36 chr6 17779193 17779277 -131737760 + A-rich Low_complexity Low_complexity 3 83 0 5 720 2125 191 191 22 chr6 17780070 17780137 -131736900 - RMER6C LTR ERVK 0 690 614 5 720 1963 99 73 35 chr6 17780137 17780452 -131736585 + ORR1A2 LTR MaLR 1 327 0 5 720 2125 191 191 22 chr6 17780452 17780974 -131736063 - RMER6C LTR ERVK -77 613 1 5 720 215 330 110 25 chr6 17781368 17781486 -131735551 + MIR3 SINE MIR 75 202 -6 5 720 215 227 0 0 chr6 17782052 17782096 -131734941 - MIRb SINE MIR -20 248 205 5 720 1099 249 171 55 chr6 17782243 17782792 -131734245 - RLTR18 LTR ERVK -3 613 1 5 720 194 62 31 0 chr6 17782962 17782994 -131734043 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 5 720 1160 62 7 7 chr6 17782996 17783142 -131733895 - B1_Mm SINE Alu -1 146 1 5 720 312 258 108 49 chr6 17783358 17783460 -131733577 - PB1D7 SINE Alu 0 120 13 5 720 231 284 140 47 chr6 17783469 17783576 -131733461 - PB1D10 SINE Alu 0 117 1 5 720 432 250 0 11 chr6 17784000 17784093 -131732944 - PB1 SINE Alu -2 125 34 5 720 26 0 0 0 chr6 17786327 17786353 -131730684 + AT_rich Low_complexity Low_complexity 1 26 0 5 720 303 269 30 70 chr6 17786380 17786480 -131730557 - RSINE1 SINE B4 -25 140 45 5 720 344 321 27 27 chr6 17786602 17786714 -131730323 + PB1 SINE Alu 15 126 -1 5 720 552 217 0 25 chr6 17787069 17787230 -131729807 + (TATG)n Simple_repeat Simple_repeat 2 158 0 5 720 272 267 109 44 chr6 17787231 17787368 -131729669 - B1F SINE Alu -3 146 1 5 720 268 212 54 86 chr6 17788792 17788885 -131728152 - PB1D7 SINE Alu -20 100 11 5 720 296 342 19 64 chr6 17789169 17789325 -131727712 + MIRb SINE MIR 48 196 -72 5 720 367 309 18 9 chr6 17789414 17789525 -131727512 - Tigger12c DNA MER2_type -580 154 43 5 720 1220 34 0 7 chr6 17789924 17790072 -131726965 - B1_Mus2 SINE Alu 0 147 1 5 720 616 247 73 12 chr6 17791788 17791952 -131725085 - MTD LTR MaLR -245 174 1 5 720 195 208 41 20 chr6 17794670 17794719 -131722318 - MIRm SINE MIR -127 149 100 5 720 284 214 182 33 chr6 17795130 17795251 -131721786 - ID_B1 SINE B4 0 224 86 5 720 385 370 68 7 chr6 17795397 17795544 -131721493 - RSINE1 SINE B4 -8 157 2 5 720 1000 191 28 9 chr6 17795835 17796046 -131720991 - B3 SINE B2 0 216 2 5 720 431 333 33 33 chr6 17796341 17796402 -131720635 + ID SINE ID 21 81 -143 5 720 481 296 24 0 chr6 17796402 17796527 -131720510 + B1F2 SINE Alu 1 128 -21 5 720 846 242 44 126 chr6 17796534 17796851 -131720186 + B4 SINE B4 2 292 0 5 720 975 55 0 0 chr6 17797138 17797265 -131719772 + B1_Mus2 SINE Alu 11 137 -10 5 720 315 0 0 0 chr6 17798236 17798271 -131718766 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 720 397 317 0 0 chr6 17798640 17798744 -131718293 - L3 LINE CR1 -3 4486 4383 5 720 1394 328 134 96 chr6 17798881 17798939 -131718098 - L3 LINE CR1 -832 3657 3591 5 720 450 0 0 0 chr6 17798939 17798989 -131718048 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 720 366 23 0 0 chr6 17798994 17799037 -131718000 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 720 1394 328 134 96 chr6 17799037 17800616 -131716421 - L3 LINE CR1 -899 3590 1966 5 720 258 32 0 0 chr6 17800616 17800647 -131716390 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 720 1394 328 134 96 chr6 17800647 17800699 -131716338 - L3 LINE CR1 -2524 1965 1897 5 720 276 115 66 0 chr6 17802625 17802686 -131714351 - Lx9 LINE L1 -7 7637 7573 5 720 27 0 0 0 chr6 17803305 17803332 -131713705 + AT_rich Low_complexity Low_complexity 1 27 0 5 720 2573 24 0 0 chr6 17804546 17804843 -131712194 - L1Md_A LINE L1 0 6582 6286 5 720 381 327 51 51 chr6 17805143 17805301 -131711736 + MIRb SINE MIR 77 234 -34 5 720 391 152 9 75 chr6 17805576 17805803 -131711234 + (TATATG)n Simple_repeat Simple_repeat 1 212 0 5 720 322 201 81 15 chr6 17805717 17805845 -131711192 + (TG)n Simple_repeat Simple_repeat 2 138 0 5 720 630 303 62 4 chr6 17805875 17806147 -131710890 - Lx8 LINE L1 -251 7222 6935 5 720 4791 53 0 32 chr6 17806853 17807529 -131709508 - L1_Mm LINE L1 -928 4955 4302 5 720 5403 56 1 0 chr6 17807529 17808205 -131708832 + L1Md_F2 LINE L1 5904 6580 -2 5 720 336 143 0 0 chr6 17808511 17808567 -131708470 + (TCC)n Simple_repeat Simple_repeat 3 58 0 5 720 21 0 0 0 chr6 17809135 17809156 -131707881 + AT_rich Low_complexity Low_complexity 1 21 0 5 720 211 242 16 0 chr6 17809331 17809393 -131707644 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 720 266 73 24 0 chr6 17810203 17810244 -131706793 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 5 720 262 293 206 19 chr6 17810684 17810844 -131706193 - MER20 DNA MER1_type -3 216 27 5 720 215 274 0 0 chr6 17811869 17811920 -131705117 + L2 LINE L2 2282 2332 -1087 5 720 797 264 118 21 chr6 17812206 17812578 -131704459 - Charlie1b DNA MER1_type -1 522 115 5 720 27 0 0 0 chr6 17812718 17812745 -131704292 + AT_rich Low_complexity Low_complexity 1 27 0 5 720 252 0 0 0 chr6 17812760 17812788 -131704249 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 5 720 2349 227 44 7 chr6 17812788 17813339 -131703698 - Lx5 LINE L1 -14 7036 6466 5 720 728 292 55 9 chr6 17813394 17813586 -131703451 + B4A SINE B4 3 205 -87 5 720 779 51 51 0 chr6 17813586 17813724 -131703313 + (GA)n Simple_repeat Simple_repeat 2 146 0 5 720 728 292 55 9 chr6 17813724 17813749 -131703288 + B4A SINE B4 206 229 -63 5 720 227 262 33 0 chr6 17813930 17813991 -131703046 - B4 SINE B4 -13 279 217 5 720 541 307 119 11 chr6 17814190 17814387 -131702650 - B4 SINE B4 0 292 69 5 720 725 146 45 61 chr6 17814384 17814550 -131702487 + B2_Mm2 SINE B2 14 176 -19 5 720 445 212 0 83 chr6 17814563 17814671 -131702366 + PB1D9 SINE Alu 2 100 -20 5 720 420 337 157 36 chr6 17815587 17816475 -131700562 - L2a LINE L2 -4 3422 2432 5 720 234 0 0 0 chr6 17816950 17816976 -131700061 + (TTA)n Simple_repeat Simple_repeat 2 27 0 5 720 302 169 15 0 chr6 17817476 17817541 -131699496 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 720 275 122 0 20 chr6 17817868 17817918 -131699119 + (GGA)n Simple_repeat Simple_repeat 3 51 0 5 720 1926 189 192 53 chr6 17818520 17819253 -131697784 - RMER6C LTR ERVK -4 716 28 5 720 266 257 40 0 chr6 17819305 17819379 -131697658 + Lx8 LINE L1 7276 7352 -121 5 720 360 0 0 0 chr6 17820165 17820205 -131696832 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 720 653 242 8 0 chr6 17820243 17820367 -131696670 - RSINE1 SINE B4 -36 129 5 5 720 229 326 56 0 chr6 17820528 17820617 -131696420 - L2 LINE L2 -969 2450 2357 5 720 1522 263 10 7 chr6 17821134 17821552 -131695485 + MTD LTR MaLR 1 419 0 5 720 550 282 109 28 chr6 17821987 17822235 -131694802 - L4 LINE RTE -1150 879 612 5 720 26 30 0 0 chr6 17823826 17823859 -131693178 + AT_rich Low_complexity Low_complexity 1 33 0 5 720 369 0 0 0 chr6 17824610 17824651 -131692386 + (CTA)n Simple_repeat Simple_repeat 1 41 0 5 720 546 16 0 0 chr6 17824651 17824714 -131692323 + (TTC)n Simple_repeat Simple_repeat 2 64 0 5 720 347 191 122 22 chr6 17824714 17824804 -131692233 - B1_Mur4 SINE Alu -14 106 9 5 720 1182 34 0 40 chr6 17824851 17825003 -131692034 + B1_Mus2 SINE Alu 2 147 0 5 720 207 0 0 0 chr6 17825003 17825026 -131692011 + (A)n Simple_repeat Simple_repeat 1 23 0 5 720 1071 174 148 56 chr6 17825079 17825438 -131691599 + Lx9 LINE L1 7253 7644 0 5 721 685 323 20 0 chr6 17826055 17826250 -131690787 + MER58A DNA MER1_type 1 199 -25 5 721 194 250 18 0 chr6 17826815 17826871 -131690166 + MIR3 SINE MIR 129 185 -23 5 721 191 296 129 30 chr6 17827220 17827321 -131689716 - L3 LINE CR1 -111 4378 4268 5 721 434 239 105 72 chr6 17827785 17827938 -131689099 - RSINE1 SINE B4 -3 162 5 5 721 413 103 0 14 chr6 17828218 17828287 -131688750 + (TA)n Simple_repeat Simple_repeat 1 68 0 5 721 833 250 61 25 chr6 17828287 17828566 -131688471 - Lx9 LINE L1 -185 7459 7171 5 721 812 101 81 0 chr6 17828572 17828721 -131688316 + RLTR9F LTR ERVK 1 161 -254 5 721 458 118 13 0 chr6 17828725 17828801 -131688236 + RLTR9F LTR ERVK 338 414 -1 5 721 859 199 62 45 chr6 17828817 17829059 -131687978 - Lx9 LINE L1 -516 7128 6883 5 721 2268 257 90 32 chr6 17829069 17829971 -131687066 + Lx9 LINE L1 5796 6882 -762 5 721 2314 281 80 28 chr6 17830096 17830408 -131686629 - Lx8 LINE L1 -156 7317 6987 5 721 386 39 19 0 chr6 17830408 17830460 -131686577 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 721 2314 281 80 28 chr6 17830460 17831037 -131686000 - Lx8 LINE L1 -487 6986 6384 5 721 1993 34 0 0 chr6 17831754 17831991 -131685046 - L1Md_F2 LINE L1 -12 6570 6334 5 721 1973 41 0 0 chr6 17831992 17832238 -131684799 + L1Md_F2 LINE L1 6033 6278 -304 5 721 1980 193 64 13 chr6 17832985 17833378 -131683659 - MTC LTR MaLR -8 413 1 5 721 1605 128 0 4 chr6 17833508 17833735 -131683302 - URR1A DNA MER1_type 0 226 1 5 721 32 57 0 0 chr6 17834621 17834674 -131682363 + AT_rich Low_complexity Low_complexity 1 53 0 5 721 599 274 123 8 chr6 17834834 17835102 -131681935 - Lx8 LINE L1 -3 7470 7172 5 721 626 282 21 45 chr6 17835125 17835387 -131681650 - B4A SINE B4 -34 258 11 5 721 354 98 0 0 chr6 17835461 17835512 -131681525 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 721 188 135 0 26 chr6 17835594 17835632 -131681405 + CT-rich Low_complexity Low_complexity 3 39 0 5 721 677 294 17 83 chr6 17835634 17835875 -131681162 - B4A SINE B4 -67 225 1 5 721 302 309 43 48 chr6 17839313 17839500 -131677537 - MIRb SINE MIR -61 207 22 5 721 4174 67 13 7 chr6 17839711 17840256 -131676781 - L1Md_F2 LINE L1 -13 6569 6022 5 721 9104 54 0 5 chr6 17840256 17841541 -131675496 + L1Md_F2 LINE L1 4746 6022 -560 5 721 533 313 65 62 chr6 17842423 17842760 -131674277 - ORR1E LTR MaLR 0 359 22 5 721 180 0 0 0 chr6 17845012 17845032 -131672005 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 721 1779 158 120 0 chr6 17846544 17846885 -131670152 + ORR1B1 LTR MaLR 13 394 0 6 721 240 295 0 13 chr6 17847808 17847887 -131669150 + B3A SINE B2 5 82 -116 6 721 205 337 42 10 chr6 17848806 17848902 -131668135 + L3 LINE CR1 3311 3409 -1080 6 721 464 165 0 11 chr6 17848916 17849008 -131668029 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 721 347 260 51 20 chr6 17849109 17849207 -131667830 - PB1D10 SINE Alu -3 114 14 6 721 279 0 0 0 chr6 17849334 17849365 -131667672 + (TAA)n Simple_repeat Simple_repeat 3 33 0 6 721 387 0 0 0 chr6 17850152 17850195 -131666842 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 721 462 18 0 0 chr6 17850195 17850250 -131666787 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 721 1318 96 21 0 chr6 17850695 17850882 -131666155 - B2_Mm2 SINE B2 -4 191 1 6 721 396 0 0 0 chr6 17851349 17851393 -131665644 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 721 267 263 18 0 chr6 17851396 17851453 -131665584 - tRNA-Ala-GCY_ tRNA tRNA -16 59 2 6 721 297 0 0 0 chr6 17851926 17851959 -131665078 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6 721 1241 34 11 38 chr6 17852342 17852717 -131664320 + (CCTG)n Simple_repeat Simple_repeat 1 364 0 6 721 428 221 0 0 chr6 17852948 17853034 -131664003 + ID_B1 SINE B4 139 224 0 6 721 674 121 24 8 chr6 17853469 17853594 -131663443 - ORR1A4 LTR MaLR -2 327 201 6 721 449 298 15 15 chr6 17853843 17853976 -131663061 + RSINE1 SINE B4 2 134 -31 6 721 429 20 0 0 chr6 17855276 17855326 -131661711 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 721 333 277 175 6 chr6 17857855 17858015 -131659022 + MIRc SINE MIR 20 206 -62 6 721 464 161 196 95 chr6 17858042 17858200 -131658837 - ORR1C2 LTR MaLR 0 384 211 6 721 774 152 3 134 chr6 17858380 17858580 -131658457 - ORR1C2 LTR MaLR -198 172 1 6 721 337 229 0 0 chr6 17858909 17858979 -131658058 - L1MA7 LINE L1 -7 6284 6215 6 721 241 300 0 0 chr6 17859190 17859250 -131657787 + GA-rich Low_complexity Low_complexity 2 61 0 6 721 734 306 34 34 chr6 17859500 17859791 -131657246 - B4 SINE B4 0 292 2 6 721 1893 318 93 64 chr6 17859798 17860970 -131656067 - ORR1C2-int LTR MaLR -82 1498 270 6 721 567 262 127 11 chr6 17860995 17861184 -131655853 - ORR1C2-int LTR MaLR -1369 211 1 6 721 792 234 13 83 chr6 17861384 17861612 -131655425 - MTEa LTR MaLR -165 214 3 6 721 22 35 0 0 chr6 17861912 17861941 -131655096 + AT_rich Low_complexity Low_complexity 1 29 0 6 721 965 119 61 22 chr6 17862003 17862183 -131654854 - RMER10B LTR ERVL -192 206 20 6 721 818 137 223 0 chr6 17862184 17862359 -131654678 - URR1A DNA MER1_type -11 215 2 6 721 385 131 0 23 chr6 17864006 17864092 -131652945 + T-rich Low_complexity Low_complexity 2 85 0 6 721 699 118 17 0 chr6 17866169 17866288 -131650749 + ORR1B1 LTR MaLR 1 121 -273 6 721 571 273 31 5 chr6 17866672 17866867 -131650170 - B3 SINE B2 -4 212 13 6 721 27 62 0 0 chr6 17868474 17868522 -131648515 + AT_rich Low_complexity Low_complexity 1 48 0 6 721 23 0 0 0 chr6 17868615 17868638 -131648399 + AT_rich Low_complexity Low_complexity 1 23 0 6 721 5231 194 66 24 chr6 17868638 17869819 -131647218 - Lx7 LINE L1 0 7696 6414 6 721 1593 292 77 45 chr6 17869819 17870569 -131646468 - Lx8 LINE L1 -30 7443 6670 6 721 363 271 69 0 chr6 17870608 17870752 -131646285 + MER3 DNA MER1_type 22 175 -34 6 721 467 114 0 25 chr6 17874801 17874882 -131642155 + (TTTC)n Simple_repeat Simple_repeat 3 81 0 6 721 24 32 0 0 chr6 17874984 17875015 -131642022 + AT_rich Low_complexity Low_complexity 1 31 0 6 721 473 276 24 49 chr6 17875098 17875262 -131641775 - B3A SINE B2 -38 160 1 6 721 297 303 40 0 chr6 17876831 17876930 -131640107 - PB1 SINE Alu -11 116 14 6 721 604 77 0 0 chr6 17883417 17883495 -131633542 - L1_Mm LINE L1 -3212 2671 2594 6 721 1717 79 48 0 chr6 17883495 17883723 -131633314 + L1_Mus1 LINE L1 6329 6567 0 6 721 292 359 126 33 chr6 17885280 17885646 -131631391 + L2b LINE L2 2976 3375 0 6 721 267 335 67 0 chr6 17887948 17888112 -131628925 - MER5B DNA MER1_type -1 177 3 6 721 816 148 158 36 chr6 17890654 17890850 -131626187 - URR1B DNA MER1_type -4 221 2 6 721 324 164 0 0 chr6 17891521 17891588 -131625449 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 721 21 0 0 0 chr6 17892985 17893006 -131624031 + AT_rich Low_complexity Low_complexity 1 21 0 6 721 278 304 0 26 chr6 17893194 17893285 -131623752 + ID4 SINE ID 8 96 -56 6 721 450 0 0 0 chr6 17894423 17894473 -131622564 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 721 265 228 109 0 chr6 17894476 17894568 -131622469 - PB1D10 SINE Alu -15 102 1 6 721 324 158 0 0 chr6 17895115 17895172 -131621865 + C-rich Low_complexity Low_complexity 1 57 0 6 721 243 298 59 4 chr6 17896737 17896848 -131620189 + B1F SINE Alu 3 120 0 6 721 21 0 0 0 chr6 17897185 17897206 -131619831 + AT_rich Low_complexity Low_complexity 1 21 0 6 721 1012 237 103 24 chr6 17897632 17897961 -131619076 - MTD LTR MaLR -13 406 65 6 721 240 235 40 10 chr6 17898534 17898633 -131618404 + (TA)n Simple_repeat Simple_repeat 2 103 0 6 721 222 37 0 0 chr6 17899023 17899050 -131617987 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 721 1317 283 50 19 chr6 17899120 17899595 -131617442 + RCHARR1 DNA MER1_type 8 497 -477 6 721 938 225 116 65 chr6 17899597 17899873 -131617164 + B4A SINE B4 3 292 0 6 721 740 11 0 11 chr6 17899876 17899966 -131617071 + (GA)n Simple_repeat Simple_repeat 1 89 0 6 721 196 203 0 42 chr6 17900148 17900220 -131616817 + (CATA)n Simple_repeat Simple_repeat 1 69 0 6 721 452 210 25 0 chr6 17900252 17900371 -131616666 + (CATATA)n Simple_repeat Simple_repeat 3 124 0 6 721 837 30 0 0 chr6 17900375 17900475 -131616562 + (TG)n Simple_repeat Simple_repeat 1 100 0 6 721 696 206 8 0 chr6 17900520 17900646 -131616391 - RSINE1 SINE B4 -38 127 1 6 721 417 295 19 0 chr6 17900994 17901099 -131615938 + PB1D7 SINE Alu 1 107 -13 6 721 231 114 0 0 chr6 17901537 17901572 -131615465 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 721 533 258 32 26 chr6 17903872 17904027 -131613010 + Lx9 LINE L1 6828 6983 -661 6 721 844 274 15 26 chr6 17904026 17904292 -131612745 + RMER1C Other Other 963 1225 -117 6 721 245 204 20 20 chr6 17904339 17904389 -131612648 + B3A SINE B2 112 161 -37 6 721 270 0 0 0 chr6 17904429 17904459 -131612578 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 721 3024 222 63 25 chr6 17904482 17905322 -131611715 + L1_Rod LINE L1 2469 3340 -2507 6 721 4405 131 13 11 chr6 17905368 17906071 -131610966 - L1_Mm LINE L1 -626 5257 4554 6 721 5790 70 61 3 chr6 17906077 17906845 -131610192 + L1_Mus3 LINE L1 5814 6626 -12 6 721 3340 207 28 26 chr6 17906853 17907652 -131609385 + L1_Rod LINE L1 4378 5177 -670 6 721 297 233 22 22 chr6 17908028 17908120 -131608917 + RLTR17 LTR ERVK 335 426 -266 6 721 1107 267 116 13 chr6 17908374 17908772 -131608265 + Lx9 LINE L1 7078 7516 -128 6 721 28 0 0 0 chr6 17908960 17908988 -131608049 + AT_rich Low_complexity Low_complexity 1 28 0 6 721 258 288 0 0 chr6 17909150 17909209 -131607828 + Lx7 LINE L1 6662 6720 -976 6 721 2804 67 12 2 chr6 17909210 17909616 -131607421 - BGLII LTR ERVK 0 421 12 6 721 493 272 141 15 chr6 17909643 17909841 -131607196 + Lx7 LINE L1 6741 6963 -733 6 721 4331 165 25 17 chr6 17909850 17910928 -131606109 + Lx6 LINE L1 5101 6187 -1509 6 721 929 157 23 0 chr6 17910928 17911190 -131605847 + (CATATA)n Simple_repeat Simple_repeat 1 267 0 6 721 3079 234 84 36 chr6 17911259 17911289 -131605748 + Lx6 LINE L1 6171 6204 -1256 6 721 3031 33 0 34 chr6 17911289 17911670 -131605367 - L1Md_F2 LINE L1 0 6582 6215 6 721 3079 234 84 36 chr6 17911670 17912422 -131604615 + Lx6 LINE L1 6205 6990 -470 6 721 267 276 23 11 chr6 17912452 17912540 -131604497 + Lx7 LINE L1 7212 7300 -396 6 721 1187 68 18 6 chr6 17912611 17912775 -131604262 + L1_Mus1 LINE L1 6402 6567 0 6 721 193 159 32 0 chr6 17912858 17912921 -131604116 + A-rich Low_complexity Low_complexity 2 66 0 6 721 579 261 148 22 chr6 17912929 17913246 -131603791 + L1MB1 LINE L1 5800 6156 -12 6 721 780 186 256 0 chr6 17913291 17913463 -131603574 - B3 SINE B2 0 216 1 6 721 521 251 217 0 chr6 17914054 17914229 -131602808 + B3 SINE B2 4 216 0 6 721 223 0 51 51 chr6 17914365 17914404 -131602633 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 721 187 292 13 53 chr6 17915858 17915934 -131601103 + MIR3 SINE MIR 114 186 -22 6 721 239 291 98 14 chr6 17916225 17916368 -131600669 - LTR50 LTR ERVL -547 248 94 6 721 237 305 42 10 chr6 17917339 17917435 -131599602 - MER5B DNA MER1_type -2 176 78 6 721 964 129 40 23 chr6 17917828 17918002 -131599035 + Lx2 LINE L1 6821 6997 0 6 721 382 340 50 31 chr6 17918712 17918873 -131598164 - B4 SINE B4 -12 280 117 6 721 235 265 0 0 chr6 17918998 17919047 -131597990 - B4A SINE B4 -243 49 1 6 721 777 73 0 0 chr6 17919177 17919384 -131597653 + L1_Mus1 LINE L1 6455 6567 0 6 721 1368 252 76 18 chr6 17920131 17920527 -131596510 + MTD LTR MaLR 1 419 0 6 721 183 28 83 0 chr6 17920616 17920652 -131596385 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 6 721 251 0 122 0 chr6 17920732 17920781 -131596256 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 6 721 1169 68 7 0 chr6 17920781 17920927 -131596110 - B1_Mus1 SINE Alu 0 148 2 6 721 2970 248 95 51 chr6 17920941 17922035 -131595002 + MTD-int LTR MaLR 117 1258 0 6 721 1642 216 50 15 chr6 17922035 17922434 -131594603 + MTD LTR MaLR 1 405 -14 6 721 2154 132 55 19 chr6 17922672 17923035 -131594002 - ORR1C1 LTR MaLR -2 376 1 6 721 2362 182 48 79 chr6 17923035 17923642 -131593395 - ORR1C1-int LTR MaLR 0 1509 922 6 721 316 239 15 0 chr6 17923683 17923750 -131593287 - ORR1C1-int LTR MaLR -1302 68 1 6 721 2441 135 3 38 chr6 17923750 17924142 -131592895 - ORR1C1 LTR MaLR 0 378 1 6 721 470 245 20 13 chr6 17924311 17924464 -131592573 - L1MA7 LINE L1 0 6291 6138 6 721 470 318 55 21 chr6 17924465 17924773 -131592264 - MER47B DNA MER2_type -7 411 31 6 721 695 255 44 16 chr6 17924790 17925024 -131592013 - L1MA7 LINE L1 -544 5768 5550 6 721 446 332 93 7 chr6 17925220 17925499 -131591538 - L1MEd LINE L1 -5317 802 500 6 721 348 268 20 60 chr6 17926217 17926368 -131590669 - Lx7 LINE L1 -18 7678 7534 6 721 180 77 0 0 chr6 17926601 17926627 -131590410 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6 721 878 94 17 8 chr6 17926833 17927072 -131589965 + (TCTA)n Simple_repeat Simple_repeat 1 241 0 7 721 453 239 0 0 chr6 17927755 17927872 -131589165 + (TA)n Simple_repeat Simple_repeat 2 118 0 7 721 21 0 0 0 chr6 17928176 17928197 -131588840 + AT_rich Low_complexity Low_complexity 1 21 0 7 721 197 400 0 0 chr6 17928543 17928628 -131588409 + L2a LINE L2 3336 3420 -6 7 721 210 338 0 0 chr6 17928703 17928777 -131588260 + MIR3 SINE MIR 124 197 -11 7 721 469 167 23 45 chr6 17929785 17929917 -131587120 - Lx9 LINE L1 -5 7639 7511 7 721 486 0 0 0 chr6 17931173 17931227 -131585810 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 721 6987 13 0 0 chr6 17931704 17932482 -131584555 + L1Md_A LINE L1 4809 5586 -297 7 721 9037 12 0 0 chr6 17932482 17933478 -131583559 + L1Md_A LINE L1 5587 6582 0 7 721 444 285 52 108 chr6 17933574 17933880 -131583157 + ORR1E LTR MaLR 66 370 -4 7 721 180 0 0 0 chr6 17934124 17934144 -131582893 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 721 190 89 21 43 chr6 17934155 17934202 -131582835 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 7 721 205 138 0 0 chr6 17934417 17934446 -131582591 + (AGGGGG)n Simple_repeat Simple_repeat 3 31 0 7 721 343 305 27 41 chr6 17934547 17934694 -131582343 + MER20 DNA MER1_type 33 177 -42 7 721 474 18 0 0 chr6 17936022 17936077 -131580960 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 721 738 0 0 0 chr6 17938853 17938935 -131578102 + (TTTCC)n Simple_repeat Simple_repeat 3 84 0 7 721 225 312 12 12 chr6 17940833 17940914 -131576123 + B1_Mur2 SINE Alu 68 148 -1 7 721 297 222 0 0 chr6 17941383 17941446 -131575591 - ID4_ SINE ID -17 66 4 7 721 191 384 114 48 chr6 17943587 17944172 -131572865 - L2 LINE L2 -358 3061 2438 7 721 314 306 18 27 chr6 17944723 17944834 -131572203 + B1F SINE Alu 31 140 -9 7 721 315 235 14 14 chr6 17944852 17944921 -131572116 + ID4_ SINE ID 2 70 -13 7 721 302 336 42 17 chr6 17945897 17946015 -131571022 - MIR SINE MIR -75 187 67 7 721 35 24 0 0 chr6 17946031 17946073 -131570964 + AT_rich Low_complexity Low_complexity 1 42 0 7 721 369 253 33 0 chr6 17946141 17946232 -131570805 + PB1D7 SINE Alu 19 112 -8 7 721 327 271 0 0 chr6 17946241 17946311 -131570726 + ID2 SINE ID 8 77 -6 7 721 3467 34 0 0 chr6 17946512 17946898 -131570139 - L1Md_T LINE L1 -1 6581 6196 7 721 3445 166 15 55 chr6 17946899 17947557 -131569480 + L1_Mus4 LINE L1 6004 6635 -1 7 721 330 287 111 0 chr6 17947639 17947747 -131569290 - B4 SINE B4 -13 279 160 7 721 252 169 14 40 chr6 17948599 17948673 -131568364 + C-rich Low_complexity Low_complexity 1 72 0 7 721 1452 60 0 0 chr6 17949758 17950115 -131566922 + (TTC)n Simple_repeat Simple_repeat 1 357 0 7 721 1047 78 0 0 chr6 17950115 17950257 -131566780 + (TCTCCC)n Simple_repeat Simple_repeat 3 144 0 7 721 26 0 0 0 chr6 17950686 17950712 -131566325 + AT_rich Low_complexity Low_complexity 1 26 0 7 721 21 0 0 0 chr6 17950950 17950971 -131566066 + AT_rich Low_complexity Low_complexity 1 21 0 7 721 300 27 0 0 chr6 17951026 17951063 -131565974 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 721 203 0 0 36 chr6 17951360 17951388 -131565649 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 7 721 2830 75 5 18 chr6 17952515 17952897 -131564140 + L1Md_F2 LINE L1 6206 6582 0 7 721 785 319 9 9 chr6 17953732 17953944 -131563093 + B4A SINE B4 2 213 -79 7 721 181 281 62 15 chr6 17954302 17954367 -131562670 + MIR SINE MIR 81 148 -60 7 721 189 0 0 0 chr6 17954685 17954706 -131562331 + (T)n Simple_repeat Simple_repeat 1 21 0 7 721 190 296 27 40 chr6 17956164 17956238 -131560799 + MIRm SINE MIR 94 166 -110 7 721 495 0 0 0 chr6 17956337 17956392 -131560645 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 721 592 309 29 7 chr6 17956430 17956570 -131560467 + B3A SINE B2 25 167 -31 7 721 621 40 0 0 chr6 17956572 17956648 -131560389 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 721 405 0 0 0 chr6 17956648 17956692 -131560345 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 722 204 306 79 26 chr6 17957132 17957246 -131559791 + MIR SINE MIR 112 231 -31 7 722 226 329 178 57 chr6 17961259 17961697 -131555340 + MLT1L LTR MaLR 66 556 -54 7 722 1798 210 35 25 chr6 17961829 17962328 -131554709 + RLTR11A2 LTR ERVK 14 526 -1 7 722 610 283 145 10 chr6 17962607 17962800 -131554237 - ID_B1 SINE B4 -4 220 2 7 722 253 325 117 30 chr6 17962818 17963015 -131554022 - MIRb SINE MIR -5 263 50 7 722 243 333 0 24 chr6 17963428 17963505 -131553532 + LTR85c LTR Gypsy? 188 262 -561 7 722 358 312 90 72 chr6 17963505 17963671 -131553366 + MER5B DNA MER1_type 2 170 -8 7 722 304 325 24 31 chr6 17964237 17964364 -131552673 + MER2B DNA MER2_type 40 165 -171 7 722 552 309 96 14 chr6 17964464 17964684 -131552353 + MER2 DNA MER2_type 82 319 -26 7 722 856 254 64 41 chr6 17964878 17965220 -131551817 - L1MEg LINE L1 -746 1761 1355 7 722 260 351 21 0 chr6 17965512 17965606 -131551431 + LTR79 LTR ERVL 60 155 -372 7 722 450 0 0 0 chr6 17966104 17966154 -131550883 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 722 243 287 65 71 chr6 17966910 17967054 -131549983 - MIRb SINE MIR -11 257 114 7 722 207 0 0 0 chr6 17967054 17967077 -131549960 + (CAGG)n Simple_repeat Simple_repeat 1 23 0 7 722 243 287 65 71 chr6 17967077 17967101 -131549936 - MIRb SINE MIR -155 113 90 7 722 714 105 0 0 chr6 17968497 17968602 -131548435 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 7 722 204 159 23 0 chr6 17968602 17968646 -131548391 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 722 528 16 0 0 chr6 17969650 17969711 -131547326 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 722 529 204 10 156 chr6 17970085 17970277 -131546760 - L1_Mur3 LINE L1 -1044 4836 4673 7 722 651 60 0 0 chr6 17970842 17970926 -131546111 + (GA)n Simple_repeat Simple_repeat 1 84 0 7 722 273 350 12 0 chr6 17973751 17973831 -131543206 + AluG_3 SINE Alu 140 220 -91 7 722 23 33 0 0 chr6 17976745 17976775 -131540262 + AT_rich Low_complexity Low_complexity 1 30 0 7 722 212 121 30 0 chr6 17977799 17977832 -131539205 - L2a LINE L2 -93 3333 3300 7 722 222 37 0 0 chr6 17979364 17979391 -131537646 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 722 405 0 0 0 chr6 17979833 17979878 -131537159 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 722 21 0 0 0 chr6 17980398 17980419 -131536618 + GC_rich Low_complexity Low_complexity 1 21 0 7 722 191 222 130 0 chr6 17982618 17982672 -131534365 + L3 LINE CR1 4417 4477 -12 7 722 27 62 0 0 chr6 17983300 17983348 -131533689 + AT_rich Low_complexity Low_complexity 1 48 0 7 722 746 267 47 0 chr6 17983377 17983549 -131533488 - B3A SINE B2 -18 180 1 7 722 239 224 19 0 chr6 17984060 17984123 -131532914 - B3A SINE B2 -128 67 1 7 722 1349 87 46 0 chr6 17984345 17984518 -131532519 + B2_Mm2 SINE B2 1 181 -14 7 722 499 311 66 18 chr6 17984539 17984765 -131532272 + L1MEf LINE L1 1397 1633 -4609 7 722 915 300 63 22 chr6 17984786 17985037 -131532000 + B4A SINE B4 2 266 -26 7 722 830 258 88 141 chr6 17985037 17985117 -131531920 - RLTR16 LTR ERVK 0 505 413 7 722 417 70 0 0 chr6 17985117 17985174 -131531863 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 722 830 258 88 141 chr6 17985174 17985626 -131531411 - RLTR16 LTR ERVK -93 412 2 7 722 915 300 63 22 chr6 17985626 17985643 -131531394 + B4A SINE B4 267 281 -11 7 722 378 0 0 0 chr6 17985701 17985743 -131531294 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 722 348 272 263 99 chr6 17985860 17986103 -131530934 + B4 SINE B4 8 290 -2 7 722 1055 309 81 27 chr6 17986460 17987246 -131529791 + L1MEf LINE L1 2119 2947 -3199 7 722 235 308 106 78 chr6 17987340 17987481 -131529556 - MLT1H LTR MaLR 0 489 345 7 722 258 300 22 3 chr6 17987647 17987736 -131529301 - MLT1H LTR MaLR -400 149 16 7 722 425 318 63 11 chr6 17987779 17987954 -131529083 - MLT1H-int LTR MaLR 0 1409 1226 7 722 238 284 0 0 chr6 17988147 17988221 -131528816 + L1MEf LINE L1 5296 5369 -804 7 722 332 240 221 19 chr6 17988333 17988541 -131528496 + L1MEe LINE L1 1955 2204 -3962 7 722 264 200 0 0 chr6 17988826 17988881 -131528156 + CT-rich Low_complexity Low_complexity 1 55 0 7 722 247 347 16 48 chr6 17988886 17989010 -131528027 - MLT1H LTR MaLR -22 527 408 7 722 338 255 28 56 chr6 17989523 17989631 -131527406 - PB1D10 SINE Alu 0 117 13 7 722 228 350 29 58 chr6 17989541 17989644 -131527393 - ID_B1 SINE B4 -44 180 81 7 722 228 250 92 43 chr6 17989878 17990062 -131526975 + L1MEe LINE L1 3022 3214 -2932 7 722 264 237 28 11 chr6 17990947 17991025 -131526012 + PB1 SINE Alu 57 137 -12 7 722 2489 56 0 0 chr6 17991148 17991450 -131525587 - L1_Mus3 LINE L1 -261 6377 6076 7 722 2074 87 7 4 chr6 17991450 17991728 -131525309 + L1_Mus3 LINE L1 6360 6638 0 7 722 415 333 85 53 chr6 17991969 17992251 -131524786 - LTR33 LTR ERVL -149 366 76 7 722 1127 268 96 24 chr6 17993176 17993592 -131523445 - Lx7 LINE L1 -641 7055 6610 7 722 180 100 143 48 chr6 17993753 17993795 -131523242 + L4 LINE RTE 877 922 -1107 7 722 1477 41 0 80 chr6 17993880 17994093 -131522944 - Lx LINE L1 -284 6370 6175 7 722 1090 130 222 21 chr6 17994075 17994318 -131522719 + L1_Mus4 LINE L1 6345 6636 0 7 722 201 24 47 47 chr6 17994742 17994785 -131522252 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 7 722 288 0 0 0 chr6 17995023 17995055 -131521982 + (CAA)n Simple_repeat Simple_repeat 3 34 0 7 722 330 87 0 0 chr6 17996148 17996194 -131520843 + (CATA)n Simple_repeat Simple_repeat 4 49 0 7 722 1411 219 150 48 chr6 17996276 17996755 -131520282 + RLTR11A LTR ERVK 1 528 0 7 722 436 265 129 29 chr6 17996758 17996996 -131520041 + L1M4 LINE L1 2918 3172 -2974 7 722 191 36 36 0 chr6 17996996 17997024 -131520013 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 7 722 436 269 113 41 chr6 17997024 17997163 -131519874 + L1M4 LINE L1 3172 3302 -2844 7 722 244 342 60 65 chr6 17997238 17997438 -131519599 - MTE-int LTR MaLR -465 1115 917 7 722 279 0 0 0 chr6 17997620 17997651 -131519386 + (T)n Simple_repeat Simple_repeat 1 31 0 7 722 756 69 0 0 chr6 17997651 17997752 -131519285 - B1_Mm SINE Alu 0 147 47 8 722 270 96 0 103 chr6 17997709 17997767 -131519270 - 4.5SRNA scRNA scRNA -8 86 35 8 722 857 319 75 20 chr6 17997980 17998329 -131518708 - MTE-int LTR MaLR -1134 446 79 7 722 1243 218 192 117 chr6 17998431 17998856 -131518181 + RMER19C LTR ERVK 236 900 -2 8 722 1898 167 124 16 chr6 17999093 17999471 -131517566 + MTD LTR MaLR 1 419 0 8 722 189 0 0 0 chr6 18002769 18002790 -131514247 + (A)n Simple_repeat Simple_repeat 1 21 0 1 722 367 257 27 0 chr6 18003972 18004046 -131512991 - ID4_ SINE ID 0 83 8 2 722 282 56 0 0 chr6 18004490 18004526 -131512511 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 722 22 0 0 0 chr6 18004722 18004744 -131512293 + AT_rich Low_complexity Low_complexity 1 22 0 4 722 23 86 0 0 chr6 18005040 18005098 -131511939 + AT_rich Low_complexity Low_complexity 1 58 0 5 722 851 68 72 43 chr6 18005743 18005882 -131511155 - L1_Mus2 LINE L1 -1 6565 6423 6 722 269 269 39 0 chr6 18005885 18005963 -131511074 - ID2 SINE ID -2 81 1 7 722 8300 139 110 29 chr6 18006592 18006964 -131510073 + Lx2 LINE L1 5247 5665 -1332 8 722 188 0 74 0 chr6 18006964 18006991 -131510046 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 9 722 8300 133 29 12 chr6 18006991 18008282 -131508755 + Lx2 LINE L1 5666 6979 -18 8 722 5064 58 9 6 chr6 18008279 18008926 -131508111 - L1_Mus4 LINE L1 -222 6414 5766 1 722 1802 107 0 0 chr6 18008926 18009189 -131507848 + L1_Mus4 LINE L1 6372 6634 -2 1 722 288 319 50 0 chr6 18009394 18009513 -131507524 - B1F SINE Alu -19 130 6 1 722 786 181 360 25 chr6 18010010 18010255 -131506782 + ORR1D1 LTR MaLR 2 343 -31 1 722 1572 179 141 12 chr6 18010255 18010595 -131506442 - ORR1C2 LTR MaLR 0 384 1 1 722 786 181 360 25 chr6 18010595 18010627 -131506410 + ORR1D1 LTR MaLR 344 372 -2 1 722 316 312 37 52 chr6 18010674 18010809 -131506228 + MER91C DNA Tip100 7 139 -1 1 722 1920 192 93 9 chr6 18010986 18011438 -131505599 - Lx9 LINE L1 -6 7638 7149 1 722 412 254 198 0 chr6 18012862 18012988 -131504049 + RSINE1 SINE B4 2 152 -13 1 722 28496 51 3 193 chr6 18013108 18019841 -131497196 + L1Md_T LINE L1 179 5586 -297 1 722 7778 53 23 0 chr6 18019841 18020814 -131496223 + L1Md_T LINE L1 5587 6581 -1 1 722 529 263 70 40 chr6 18020841 18021241 -131495796 + L1MD LINE L1 3321 3730 -2416 1 722 565 295 88 46 chr6 18021372 18021635 -131495402 - B4 SINE B4 -18 274 1 1 722 32 43 0 0 chr6 18022322 18022368 -131494669 + AT_rich Low_complexity Low_complexity 1 46 0 2 722 5829 64 9 22 chr6 18022908 18023686 -131493351 + L1_Mus1 LINE L1 5800 6567 0 2 722 23 33 0 0 chr6 18024072 18024102 -131492935 + AT_rich Low_complexity Low_complexity 1 30 0 2 722 21 0 0 0 chr6 18024740 18024761 -131492276 + AT_rich Low_complexity Low_complexity 1 21 0 2 722 363 155 10 30 chr6 18027569 18027669 -131489368 + GA-rich Low_complexity Low_complexity 1 98 0 2 722 328 151 183 0 chr6 18027687 18027780 -131489257 + Lx8 LINE L1 7355 7464 -9 2 722 279 79 0 0 chr6 18028950 18028988 -131488049 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 722 21 57 0 0 chr6 18029192 18029227 -131487810 + AT_rich Low_complexity Low_complexity 1 35 0 2 722 957 259 114 29 chr6 18029242 18029584 -131487453 - MTE2b LTR MaLR -4 375 5 2 722 359 326 45 22 chr6 18029769 18029948 -131487089 - L1MEd LINE L1 -4977 1142 960 2 722 30737 110 17 8 chr6 18030348 18036418 -131480619 + L1_Mus3 LINE L1 480 6626 -12 3 722 30 59 0 0 chr6 18036419 18036470 -131480567 + AT_rich Low_complexity Low_complexity 1 51 0 3 722 1484 175 104 70 chr6 18040415 18040772 -131476265 + ORR1D1 LTR MaLR 6 374 0 3 722 285 29 0 0 chr6 18040779 18040813 -131476224 + (CCA)n Simple_repeat Simple_repeat 1 34 0 3 722 264 316 125 28 chr6 18040865 18041393 -131475644 + L1_Rod LINE L1 1354 1932 -3915 3 722 414 0 0 0 chr6 18041416 18041462 -131475575 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 722 234 0 0 0 chr6 18041462 18041487 -131475550 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 722 840 281 138 51 chr6 18041502 18041755 -131475282 + L1_Mur3 LINE L1 2628 2918 -2962 3 722 1541 231 87 13 chr6 18041755 18042145 -131474892 - MTD LTR MaLR 0 419 1 3 722 840 281 138 51 chr6 18042145 18042581 -131474456 + L1_Mur3 LINE L1 2919 3376 -2504 3 722 703 305 46 39 chr6 18042621 18043037 -131474000 + L1_Rod LINE L1 5429 5847 0 3 722 405 0 0 0 chr6 18043066 18043111 -131473926 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 722 802 295 67 12 chr6 18043925 18044179 -131472858 - B4 SINE B4 0 292 25 4 722 377 310 24 57 chr6 18044182 18044305 -131472732 - B4A SINE B4 -169 123 5 4 722 497 194 0 11 chr6 18044334 18044428 -131472609 + B1_Mus2 SINE Alu 43 135 -12 4 722 296 236 11 0 chr6 18044563 18044652 -131472385 + GA-rich Low_complexity Low_complexity 3 92 0 4 722 328 361 31 16 chr6 18044794 18044988 -131472049 + L1MEg LINE L1 807 1003 -5081 4 722 269 239 56 22 chr6 18045240 18045330 -131471707 + L1MEg LINE L1 1251 1343 -4741 4 722 205 172 0 30 chr6 18046588 18046654 -131470383 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 722 300 164 9 43 chr6 18046705 18046820 -131470217 + (TA)n Simple_repeat Simple_repeat 2 112 0 4 722 193 333 12 23 chr6 18046949 18047035 -131470002 + MIRb SINE MIR 179 263 -5 4 722 289 249 49 0 chr6 18047088 18047214 -131469823 + L1_Rod LINE L1 5098 5271 -869 4 722 319 244 89 44 chr6 18048262 18048352 -131468685 - RSINE1 SINE B4 -70 95 2 4 722 543 226 129 0 chr6 18048444 18048568 -131468469 + B1_Mur1 SINE Alu 6 145 -4 5 722 186 281 0 0 chr6 18049035 18049099 -131467938 + GA-rich Low_complexity Low_complexity 1 64 0 5 722 499 207 15 0 chr6 18049440 18049575 -131467462 + (TA)n Simple_repeat Simple_repeat 2 138 0 5 722 2679 174 21 39 chr6 18049652 18050185 -131466852 + RLTR11A2 LTR ERVK 1 523 -4 5 722 1085 257 75 14 chr6 18050185 18050532 -131466505 - ORR1D2 LTR MaLR -2 368 1 5 722 379 308 172 45 chr6 18050567 18050904 -131466133 + L1ME2 LINE L1 5784 6163 -1 5 722 3300 40 0 7 chr6 18051061 18051467 -131465570 + L1Md_F2 LINE L1 6177 6579 -3 5 722 335 307 0 47 chr6 18051672 18051778 -131465259 - PB1D10 SINE Alu -16 101 1 5 722 627 103 19 0 chr6 18052108 18052215 -131464822 - Lx3C LINE L1 -2 6974 6866 5 722 366 349 42 19 chr6 18052252 18052465 -131464572 - MER20 DNA MER1_type 0 219 2 5 722 21 0 0 0 chr6 18052471 18052492 -131464545 + AT_rich Low_complexity Low_complexity 1 21 0 6 722 554 254 54 40 chr6 18053001 18053149 -131463888 - B3A SINE B2 -13 185 36 6 722 645 264 0 37 chr6 18054003 18054137 -131462900 - RSINE1 SINE B4 -35 130 2 6 722 218 125 59 59 chr6 18054151 18054219 -131462818 + T-rich Low_complexity Low_complexity 5 72 0 6 722 245 188 43 0 chr6 18054943 18055012 -131462025 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 722 328 287 102 47 chr6 18055028 18055156 -131461881 - B3 SINE B2 -17 199 65 6 722 915 215 30 15 chr6 18055895 18056093 -131460944 + B3 SINE B2 2 202 -14 6 722 475 191 36 0 chr6 18056426 18056510 -131460527 + B2_Mm2 SINE B2 1 87 -108 6 722 30 0 0 0 chr6 18056554 18056584 -131460453 + AT_rich Low_complexity Low_complexity 1 30 0 6 722 211 392 35 40 chr6 18057542 18057715 -131459322 - MIRb SINE MIR -46 222 51 6 722 23 0 0 0 chr6 18059872 18059895 -131457142 + AT_rich Low_complexity Low_complexity 1 23 0 7 722 843 176 164 10 chr6 18059902 18060097 -131456940 + URR1B DNA MER1_type 1 225 0 7 722 192 77 0 0 chr6 18060115 18060141 -131456896 + (T)n Simple_repeat Simple_repeat 1 26 0 7 722 202 292 89 50 chr6 18060428 18060529 -131456508 - L2b LINE L2 -46 3329 3225 7 722 547 205 148 72 chr6 18061327 18061590 -131455447 + L1MD LINE L1 4622 4904 -1242 7 722 404 254 40 0 chr6 18061931 18062054 -131454983 - L1MA4A LINE L1 -386 5917 5748 7 722 312 27 0 0 chr6 18062078 18062115 -131454922 + (TA)n Simple_repeat Simple_repeat 1 37 0 7 722 545 88 0 11 chr6 18062505 18062597 -131454440 - L1Md_F2 LINE L1 -1 6581 6491 7 722 4715 280 82 42 chr6 18062740 18064002 -131453035 - Lx8 LINE L1 -1 7472 6200 7 722 377 66 16 0 chr6 18064002 18064063 -131452974 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 722 294 95 0 0 chr6 18064063 18064104 -131452933 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 8 722 4715 261 67 22 chr6 18064104 18064911 -131452126 - Lx8 LINE L1 -1274 6199 5317 7 722 330 283 68 61 chr6 18064941 18065088 -131451949 - B1F SINE Alu -1 148 1 8 722 21 0 0 0 chr6 18065420 18065441 -131451596 + AT_rich Low_complexity Low_complexity 1 21 0 8 722 29 0 0 0 chr6 18065523 18065552 -131451485 + AT_rich Low_complexity Low_complexity 1 29 0 8 722 805 307 96 23 chr6 18065570 18065954 -131451083 - MLT1C LTR MaLR -2 465 54 8 722 235 299 46 47 chr6 18066748 18066888 -131450149 - MIR SINE MIR -34 234 86 8 722 26 30 0 0 chr6 18067609 18067642 -131449395 + AT_rich Low_complexity Low_complexity 1 33 0 8 722 1223 81 6 0 chr6 18067843 18068016 -131449021 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 8 722 1155 57 0 0 chr6 18068018 18068158 -131448879 - B1_Mm SINE Alu -6 141 2 8 722 939 117 12 12 chr6 18068164 18068329 -131448708 - L1_Mus3 LINE L1 0 6638 6474 8 722 468 264 27 36 chr6 18068609 18068719 -131448318 + B3 SINE B2 71 179 -37 9 722 411 38 0 0 chr6 18068863 18068916 -131448121 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 722 426 147 29 19 chr6 18069202 18069306 -131447731 - L1Md_F3 LINE L1 -1 6583 6479 9 722 7238 101 18 27 chr6 18069306 18071404 -131445633 - L1Md_F LINE L1 -3636 2247 168 9 722 264 30 0 0 chr6 18071912 18071945 -131445092 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 9 722 9901 184 52 31 chr6 18072313 18074002 -131443035 + L1_Mur1 LINE L1 803 2576 -3310 9 722 3522 51 4 4 chr6 18074002 18074452 -131442585 + L1Md_F2 LINE L1 6133 6582 0 9 722 9901 172 24 37 chr6 18074452 18075294 -131441743 + L1_Mur1 LINE L1 2577 3373 -2513 9 722 272 123 49 12 chr6 18075560 18075642 -131441395 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 9 722 609 133 0 0 chr6 18075720 18075818 -131441219 + (TA)n Simple_repeat Simple_repeat 1 98 0 9 722 292 94 0 30 chr6 18076167 18076178 -131440859 + (TTTTTG)n Simple_repeat Simple_repeat 1 11 0 9 722 1170 70 0 0 chr6 18076178 18076320 -131440717 - B1_Mm SINE Alu -2 145 4 1 722 292 94 0 30 chr6 18076320 18076374 -131440663 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 1 722 979 157 29 5 chr6 18077039 18077244 -131439793 + Lx LINE L1 6445 6654 0 1 722 331 223 85 100 chr6 18077559 18077704 -131439333 + ORR1E LTR MaLR 218 379 0 1 722 353 328 164 31 chr6 18077825 18078178 -131438859 + L2a LINE L2 2918 3317 -109 1 722 540 225 0 27 chr6 18078504 18078687 -131438350 + GA-rich Low_complexity Low_complexity 1 178 0 1 722 241 247 0 38 chr6 18078722 18078802 -131438235 - IAPLTR1_Mm LTR ERVK -94 273 197 1 722 5833 126 50 3 chr6 18078805 18079763 -131437274 - Lx3C LINE L1 -2 6974 5972 1 722 438 320 167 9 chr6 18080658 18080891 -131436146 + LTR16A1 LTR ERVL 143 412 -44 1 722 33 25 0 0 chr6 18081217 18081257 -131435780 + AT_rich Low_complexity Low_complexity 1 40 0 1 722 646 231 20 39 chr6 18081433 18081586 -131435451 + B1_Mur4 SINE Alu 1 150 0 1 722 549 80 0 0 chr6 18081593 18081668 -131435369 + (GA)n Simple_repeat Simple_repeat 1 75 0 1 722 678 245 52 42 chr6 18082323 18082536 -131434501 - B3 SINE B2 -1 215 1 1 722 300 370 0 32 chr6 18082856 18082951 -131434086 + RSINE1 SINE B4 3 94 -71 1 722 822 145 0 0 chr6 18082968 18083106 -131433931 + (TCCC)n Simple_repeat Simple_repeat 3 140 0 1 722 474 246 51 51 chr6 18083140 18083354 -131433683 - L1MB4 LINE L1 -2 6178 5965 1 722 2656 93 44 23 chr6 18083597 18084025 -131433012 + Lx3A LINE L1 6545 6981 0 1 722 682 272 0 0 chr6 18084281 18084428 -131432609 + B3A SINE B2 16 162 -36 1 722 195 139 0 0 chr6 18086081 18086117 -131430920 + (T)n Simple_repeat Simple_repeat 1 36 0 1 722 323 309 0 125 chr6 18087145 18087206 -131429831 + Tigger5 DNA MER2_type 2276 2329 -77 1 722 1240 125 0 5 chr6 18087206 18087391 -131429646 - B2_Mm2 SINE B2 -11 184 1 1 722 323 309 0 125 chr6 18087391 18087473 -131429564 + Tigger5 DNA MER2_type 2330 2401 -5 1 90 8514 23 1 0 chr6 18087700 18089037 -131428000 - L1Md_T LINE L1 0 6582 5245 1 723 8814 63 1 8 chr6 18089030 18090989 -131426048 - L1Md_Gf LINE L1 -3476 2410 369 1 723 218 351 0 87 chr6 18091095 18091198 -131425839 + L2c LINE L2 3256 3349 -38 1 723 691 289 10 28 chr6 18091729 18091947 -131425090 + B3A SINE B2 2 209 -7 1 723 763 248 0 0 chr6 18093044 18093181 -131423856 - B1_Mur1 SINE Alu -4 145 9 1 723 30 59 0 0 chr6 18093222 18093273 -131423764 + AT_rich Low_complexity Low_complexity 1 51 0 1 723 3287 102 137 9 chr6 18093333 18093875 -131423162 + L1_Mus4 LINE L1 6002 6612 -24 1 723 192 77 0 0 chr6 18095945 18095971 -131421066 + (A)n Simple_repeat Simple_repeat 1 26 0 1 723 2888 135 184 16 chr6 18096970 18097514 -131419523 - Lx LINE L1 -4 6650 6016 1 723 7524 100 16 3 chr6 18097514 18098979 -131418058 + L1_Mus4 LINE L1 5149 6631 -5 1 723 1397 141 53 0 chr6 18099036 18099263 -131417774 - L1_Mm LINE L1 -277 5606 5368 1 723 2076 267 81 23 chr6 18099261 18099336 -131417701 - L1MC3 LINE L1 -223 7562 7481 1 723 2383 106 32 54 chr6 18099336 18099745 -131417292 - Lx2 LINE L1 -6 6991 6592 1 723 2076 279 153 45 chr6 18099745 18101732 -131415305 - L1MC3 LINE L1 -305 7480 5282 1 723 408 88 0 0 chr6 18102087 18102144 -131414893 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 723 641 291 16 12 chr6 18102152 18102331 -131414706 - B3 SINE B2 -13 185 1 1 723 2813 129 5 0 chr6 18102624 18103065 -131413972 - Lx LINE L1 -6 6648 6206 1 723 22 70 0 0 chr6 18103583 18103626 -131413411 + AT_rich Low_complexity Low_complexity 1 43 0 1 723 501 17 0 0 chr6 18104201 18104259 -131412778 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 1 723 368 333 47 80 chr6 18108005 18108217 -131408820 + MER20 DNA MER1_type 8 212 -7 1 723 283 281 216 17 chr6 18108278 18108394 -131408643 + B4 SINE B4 81 219 -73 1 723 572 155 29 19 chr6 18108297 18108402 -131408635 + PB1D9 SINE Alu 14 119 -1 1 723 250 277 0 98 chr6 18108416 18108508 -131408529 - MIRc SINE MIR -163 105 23 1 723 189 0 0 0 chr6 18108839 18108860 -131408177 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 723 227 333 157 30 chr6 18109739 18109937 -131407100 + MIR SINE MIR 39 261 -1 1 723 286 24 0 0 chr6 18111252 18111293 -131405744 - L1_Mus2 LINE L1 0 6566 6526 1 723 300 136 0 0 chr6 18111336 18111380 -131405657 + Lx7 LINE L1 6908 6951 -745 1 723 1686 245 94 26 chr6 18111380 18111688 -131405349 + Lx6 LINE L1 6900 7218 -242 1 723 423 0 0 0 chr6 18111688 18111735 -131405302 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 723 2470 32 19 0 chr6 18111735 18112045 -131404992 - L1Md_F2 LINE L1 -13 6569 6254 1 723 1686 245 94 26 chr6 18112045 18112097 -131404940 + Lx6 LINE L1 7219 7285 -175 1 723 198 0 0 0 chr6 18112097 18112119 -131404918 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 1 723 1686 245 94 26 chr6 18112119 18112255 -131404782 + Lx6 LINE L1 7286 7430 -30 1 723 38189 45 0 3 chr6 18112285 18119018 -131398019 - L1Md_T LINE L1 0 6585 1 1 723 806 178 0 46 chr6 18119021 18119174 -131397863 - B1_Mus1 SINE Alu 0 148 3 1 723 254 270 0 41 chr6 18119991 18120161 -131396876 + GA-rich Low_complexity Low_complexity 5 167 0 1 723 270 193 0 0 chr6 18120222 18120279 -131396758 + GA-rich Low_complexity Low_complexity 2 58 0 1 723 180 0 0 0 chr6 18120491 18120511 -131396526 + (CGGG)n Simple_repeat Simple_repeat 3 22 0 1 723 29 0 0 0 chr6 18120541 18120570 -131396467 + GC_rich Low_complexity Low_complexity 1 29 0 1 723 208 245 61 0 chr6 18121238 18121287 -131395750 + MIRm SINE MIR 223 274 -2 1 723 22 35 0 0 chr6 18123000 18123029 -131394008 + AT_rich Low_complexity Low_complexity 1 29 0 1 723 21 57 0 0 chr6 18123057 18123092 -131393945 + AT_rich Low_complexity Low_complexity 1 35 0 1 723 748 308 48 19 chr6 18123396 18123667 -131393370 - B4 SINE B4 -1 291 13 1 723 21 0 0 0 chr6 18124206 18124227 -131392810 + AT_rich Low_complexity Low_complexity 1 21 0 1 723 1021 212 42 0 chr6 18125319 18125536 -131391501 + URR1A DNA MER1_type 1 226 0 1 723 225 83 0 0 chr6 18126105 18126141 -131390896 + (T)n Simple_repeat Simple_repeat 1 36 0 1 723 537 115 0 0 chr6 18126682 18126778 -131390259 + (TC)n Simple_repeat Simple_repeat 1 96 0 1 723 23 33 0 0 chr6 18127414 18127444 -131389593 + AT_rich Low_complexity Low_complexity 1 30 0 1 723 360 64 0 0 chr6 18128190 18128237 -131388800 + (TCC)n Simple_repeat Simple_repeat 2 48 0 1 723 554 217 128 56 chr6 18128670 18128865 -131388172 - B3 SINE B2 -6 210 2 1 723 198 0 0 0 chr6 18128974 18128996 -131388041 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 723 391 296 172 52 chr6 18129639 18129964 -131387073 + Kanga11a DNA Tc2 30 393 -577 1 723 477 278 144 36 chr6 18130011 18130261 -131386776 + Kanga11a DNA Tc2 681 957 -13 1 723 395 287 108 8 chr6 18130821 18130951 -131386086 + MIRb SINE MIR 9 151 -117 1 723 531 347 41 41 chr6 18131014 18131284 -131385753 - MLT2D LTR ERVL 0 414 145 1 723 331 164 60 0 chr6 18131298 18131365 -131385672 - RLTR20B1 LTR ERVK -492 71 1 1 723 219 257 13 67 chr6 18131728 18131803 -131385234 - ID4 SINE ID -11 72 2 1 723 819 327 41 22 chr6 18131886 18132205 -131384832 - MLT1C LTR MaLR -7 460 136 1 723 889 109 0 0 chr6 18132239 18132377 -131384660 + Lx LINE L1 6511 6648 -6 1 723 22 70 0 0 chr6 18132541 18132584 -131384453 + AT_rich Low_complexity Low_complexity 1 43 0 1 723 21 36 0 0 chr6 18132944 18132972 -131384065 + AT_rich Low_complexity Low_complexity 1 28 0 1 723 25 31 0 0 chr6 18133476 18133508 -131383529 + AT_rich Low_complexity Low_complexity 1 32 0 1 723 789 269 51 69 chr6 18134417 18134752 -131382285 - Lx8 LINE L1 -26 7447 7119 1 723 505 240 52 115 chr6 18134889 18135063 -131381974 - RSINE1 SINE B4 -2 163 1 1 723 342 311 126 28 chr6 18136081 18136263 -131380774 - HAL1-3A_ME LINE L1 -375 2483 2284 1 723 311 250 10 10 chr6 18136705 18136806 -131380231 - L1MB8 LINE L1 -7 6171 6071 1 723 495 0 0 0 chr6 18136835 18136890 -131380147 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 1 723 1226 298 67 19 chr6 18136936 18137026 -131380011 + MTD LTR MaLR 15 110 -309 1 723 288 0 0 0 chr6 18137026 18137058 -131379979 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 723 180 0 0 0 chr6 18137064 18137084 -131379953 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 723 1226 298 67 19 chr6 18137084 18137359 -131379678 + MTD LTR MaLR 121 404 -15 1 723 1048 249 112 40 chr6 18137579 18138175 -131378862 - L1MB8 LINE L1 -457 5727 5092 1 723 18566 76 22 3 chr6 18138330 18141598 -131375439 + MusHAL1 LINE L1 1 3330 -23 1 723 244 164 16 32 chr6 18141598 18141661 -131375376 - ORR1A2 LTR MaLR -239 88 27 1 723 26 50 0 0 chr6 18142374 18142414 -131374623 + AT_rich Low_complexity Low_complexity 1 40 0 1 723 939 195 41 10 chr6 18142580 18142777 -131374260 - B3 SINE B2 -13 203 1 1 723 4667 70 11 3 chr6 18143240 18143856 -131373181 + L1_Mus1 LINE L1 5946 6566 -1 1 723 357 326 133 38 chr6 18144037 18144384 -131372653 + MER63B DNA AcHobo 53 432 -4 1 723 968 111 7 0 chr6 18144851 18145004 -131372033 + (TTTC)n Simple_repeat Simple_repeat 4 157 0 1 723 668 119 9 0 chr6 18145019 18145128 -131371909 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 1 723 3301 58 7 7 chr6 18145130 18145564 -131371473 - L1_Mus2 LINE L1 0 6566 6133 1 723 963 98 0 0 chr6 18145564 18145696 -131371341 + L1_Mus2 LINE L1 5818 5949 -617 1 723 2851 58 0 0 chr6 18146207 18146553 -131370484 - ORR1A1 LTR MaLR 0 346 1 1 723 304 324 45 90 chr6 18146766 18146922 -131370115 + B4A SINE B4 71 219 -73 1 723 903 182 7 0 chr6 18146787 18146930 -131370107 + B1_Mur4 SINE Alu 7 150 0 1 723 282 56 0 0 chr6 18147070 18147106 -131369931 + (CATA)n Simple_repeat Simple_repeat 4 39 0 1 723 388 169 28 0 chr6 18147108 18147179 -131369858 + ORR1D1 LTR MaLR 27 99 -275 1 723 270 0 0 0 chr6 18147179 18147209 -131369828 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 723 28 29 0 0 chr6 18147450 18147485 -131369552 + AT_rich Low_complexity Low_complexity 1 35 0 2 723 454 216 26 39 chr6 18147494 18147648 -131369389 - Lx3B LINE L1 -4 6969 6818 2 723 1271 180 0 4 chr6 18147624 18147853 -131369184 - Lx3B LINE L1 -274 6699 6472 2 723 287 315 110 0 chr6 18148548 18148675 -131368362 - B1F SINE Alu -8 141 1 2 723 930 204 326 7 chr6 18148714 18148846 -131368191 + ORR1D1 LTR MaLR 3 202 -172 2 723 495 0 0 0 chr6 18148846 18148901 -131368136 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 723 930 204 326 7 chr6 18148901 18149050 -131367987 + ORR1D1 LTR MaLR 203 374 0 2 723 2380 298 131 33 chr6 18149211 18150315 -131366722 - Lx8 LINE L1 -2 7471 6259 2 723 244 184 38 38 chr6 18150305 18150384 -131366653 - Lx5 LINE L1 0 7050 6972 2 723 189 278 55 18 chr6 18151061 18151116 -131365921 - MIRc SINE MIR -114 154 98 2 723 360 319 122 42 chr6 18151175 18151463 -131365574 - MLT1K LTR MaLR -2 593 283 2 723 366 195 0 0 chr6 18151463 18151540 -131365497 + CT-rich Low_complexity Low_complexity 4 80 0 2 723 549 209 119 70 chr6 18152421 18152606 -131364431 - Lx5 LINE L1 0 7050 6857 2 723 571 233 68 12 chr6 18153206 18153367 -131363670 - Lx9 LINE L1 -355 7289 7120 2 723 461 259 105 0 chr6 18153371 18153514 -131363523 + Lx9 LINE L1 7300 7457 -187 2 723 186 71 0 0 chr6 18153514 18153542 -131363495 + (TATG)n Simple_repeat Simple_repeat 3 30 0 2 723 256 344 70 74 chr6 18153542 18153640 -131363397 + Lx8 LINE L1 7329 7411 -62 2 723 29 28 0 0 chr6 18153699 18153735 -131363302 + AT_rich Low_complexity Low_complexity 1 36 0 2 723 531 0 0 0 chr6 18154718 18154777 -131362260 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 2 723 192 135 0 0 chr6 18154805 18154842 -131362195 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 723 267 31 0 0 chr6 18154904 18154936 -131362101 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 723 221 269 48 7 chr6 18155478 18155624 -131361413 + (TA)n Simple_repeat Simple_repeat 2 153 0 2 723 671 198 83 0 chr6 18156314 18156506 -131360531 - L1MA6 LINE L1 -7 6293 6086 2 723 7582 109 20 1 chr6 18157152 18158731 -131358306 - L1_Mus4 LINE L1 0 6636 5031 2 723 1953 142 0 3 chr6 18158733 18159051 -131357986 + L1_Mus4 LINE L1 4742 5058 -825 2 723 24 53 0 0 chr6 18159990 18160028 -131357009 + AT_rich Low_complexity Low_complexity 1 38 0 2 723 1305 26 0 0 chr6 18162224 18162380 -131354657 + L1_Mus4 LINE L1 5679 5834 -802 2 723 1379 146 67 8 chr6 18162383 18162520 -131354517 + Lx LINE L1 6381 6518 -136 2 723 183 80 0 0 chr6 18162520 18162545 -131354492 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 2 723 1379 146 67 8 chr6 18162545 18162662 -131354375 + Lx LINE L1 6519 6648 -6 2 723 26 50 0 0 chr6 18162790 18162830 -131354207 + AT_rich Low_complexity Low_complexity 1 40 0 2 723 827 232 75 71 chr6 18165090 18165461 -131351576 + RMER13B LTR ERVK 474 926 -32 2 723 3691 84 10 10 chr6 18165461 18165979 -131351058 - L1_Mus3 LINE L1 -2 6636 6119 2 723 645 265 121 98 chr6 18165979 18166004 -131351033 + RMER13B LTR ERVK 927 948 -10 2 723 1141 82 0 0 chr6 18166296 18166442 -131350595 + B1_Mus2 SINE Alu 2 147 0 2 723 183 114 0 0 chr6 18166442 18166477 -131350560 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 723 1641 285 97 7 chr6 18168469 18169350 -131347687 - Lx8 LINE L1 -363 7110 6151 2 723 381 303 94 17 chr6 18169399 18169634 -131347403 - Charlie7 DNA MER1_type -1919 693 441 2 723 928 129 129 0 chr6 18169636 18169799 -131347238 + B2_Mm2 SINE B2 1 184 -9 2 723 238 267 17 0 chr6 18169850 18169910 -131347127 - Charlie7 DNA MER1_type -2224 388 328 2 723 322 244 11 32 chr6 18170176 18170269 -131346768 - Lx8 LINE L1 -1558 5915 5825 2 723 260 328 31 0 chr6 18171073 18171137 -131345900 + L2c LINE L2 3295 3360 -27 2 723 288 0 0 0 chr6 18171155 18171187 -131345850 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 723 672 177 48 0 chr6 18172213 18172337 -131344700 - B1_Mus2 SINE Alu -3 144 15 2 723 273 204 255 11 chr6 18172785 18172879 -131344158 - PB1D9 SINE Alu 0 120 4 2 723 198 0 0 0 chr6 18173344 18173366 -131343671 + (A)n Simple_repeat Simple_repeat 1 22 0 2 723 52 50 0 0 chr6 18175634 18175714 -131341323 + AT_rich Low_complexity Low_complexity 1 80 0 2 723 195 267 0 0 chr6 18175789 18175834 -131341203 - MIRm SINE MIR -134 142 98 2 723 223 369 0 19 chr6 18178279 18178384 -131338653 + MIRb SINE MIR 55 157 -111 2 723 363 294 108 52 chr6 18179009 18179221 -131337816 - Charlie2b DNA MER1_type -2484 298 75 2 723 429 81 0 0 chr6 18179651 18179713 -131337324 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 723 24 0 0 0 chr6 18179842 18179866 -131337171 + AT_rich Low_complexity Low_complexity 1 24 0 2 723 1525 308 133 27 chr6 18180205 18181022 -131336015 - Lx9 LINE L1 -18 7626 6723 2 723 374 69 17 0 chr6 18181175 18181233 -131335804 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 723 22 0 0 0 chr6 18181497 18181519 -131335518 + AT_rich Low_complexity Low_complexity 1 22 0 2 723 2716 201 34 11 chr6 18182004 18182558 -131334479 + Lx5 LINE L1 6480 7046 -4 2 723 616 185 169 21 chr6 18182798 18182964 -131334073 - Lx4B LINE L1 -53 7005 6874 2 723 31 44 0 0 chr6 18183483 18183528 -131333509 + AT_rich Low_complexity Low_complexity 1 45 0 2 723 388 308 86 23 chr6 18183930 18184175 -131332862 + B4A SINE B4 11 282 -10 2 723 537 44 0 0 chr6 18184209 18184277 -131332760 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 723 2432 92 59 5 chr6 18184348 18184721 -131332316 - L1_Mus4 LINE L1 -6 6630 6238 2 723 303 203 0 0 chr6 18184721 18184785 -131332252 - RCHARR1 DNA MER1_type -155 819 756 2 723 699 289 126 25 chr6 18185376 18185702 -131331335 - ORR1E LTR MaLR 0 359 1 2 723 498 288 35 14 chr6 18185920 18186061 -131330976 + B1F SINE Alu 5 148 -1 2 723 313 243 146 0 chr6 18186708 18186811 -131330226 - L1MB8 LINE L1 -51 6127 6010 2 723 4594 36 0 4 chr6 18186818 18187372 -131329665 - L1Md_F3 LINE L1 -1 6583 6032 2 723 888 264 104 122 chr6 18188474 18188850 -131328187 - MTD LTR MaLR 0 419 11 2 723 374 282 10 0 chr6 18190305 18190408 -131326629 - Lx9 LINE L1 -294 7350 7247 2 723 318 206 0 0 chr6 18191111 18191179 -131325858 + (CATA)n Simple_repeat Simple_repeat 1 68 0 2 723 743 160 22 22 chr6 18193849 18193983 -131323054 + B1_Mur3 SINE Alu 1 134 -15 2 723 979 117 0 27 chr6 18193984 18194169 -131322868 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 723 613 149 7 34 chr6 18194170 18194316 -131322721 + GA-rich Low_complexity Low_complexity 1 142 0 2 723 521 206 6 28 chr6 18194350 18194530 -131322507 + GA-rich Low_complexity Low_complexity 1 176 0 2 723 857 116 13 13 chr6 18194577 18194734 -131322303 + (GAA)n Simple_repeat Simple_repeat 3 159 0 2 723 203 300 10 126 chr6 18194879 18194982 -131322055 - L2b LINE L2 -4 3383 3293 2 723 211 353 190 6 chr6 18195089 18195263 -131321774 - L2b LINE L2 -210 3165 2960 2 723 394 218 34 11 chr6 18195520 18195608 -131321429 + B1F2 SINE Alu 40 129 -20 2 723 261 0 0 0 chr6 18195613 18195642 -131321395 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 723 369 235 74 0 chr6 18195645 18195761 -131321276 - L1MA7 LINE L1 -169 6143 6017 2 723 210 286 82 0 chr6 18196282 18196331 -131320706 - L2a LINE L2 -86 3340 3288 2 723 222 118 0 0 chr6 18196727 18196761 -131320276 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 723 369 0 0 0 chr6 18197044 18197085 -131319952 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 723 378 0 0 0 chr6 18197085 18197126 -131319911 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 723 387 314 71 89 chr6 18197165 18197445 -131319592 - B4 SINE B4 -16 276 2 2 723 36 23 0 0 chr6 18198908 18198951 -131318086 + AT_rich Low_complexity Low_complexity 1 43 0 2 723 503 274 62 26 chr6 18199403 18199598 -131317439 + Lx8 LINE L1 7265 7466 -7 2 723 240 145 49 73 chr6 18199676 18199758 -131317279 + Lx9 LINE L1 7563 7642 -2 2 723 1006 113 35 78 chr6 18200612 18200843 -131316194 + Lx LINE L1 6429 6649 -5 2 723 275 307 131 23 chr6 18201297 18201427 -131315610 + LTR16B1 LTR ERVL 335 478 -2 2 723 316 204 54 114 chr6 18201662 18201811 -131315226 - Lx9 LINE L1 -15 7629 7490 2 723 25 65 0 0 chr6 18202629 18202675 -131314362 + AT_rich Low_complexity Low_complexity 1 46 0 2 723 2029 173 33 36 chr6 18203763 18204182 -131312855 + MTD LTR MaLR 1 418 -1 2 723 243 330 63 34 chr6 18205930 18206061 -131310976 - B4 SINE B4 -83 209 72 2 723 186 103 0 0 chr6 18206354 18206383 -131310654 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 2 723 292 280 112 62 chr6 18206390 18206550 -131310487 - MIRb SINE MIR -60 208 41 2 723 412 157 9 56 chr6 18207458 18207566 -131309471 - Lx3A LINE L1 -8 6973 6871 2 723 594 266 62 31 chr6 18207865 18208059 -131308978 + B3 SINE B2 2 201 -15 2 723 309 169 0 0 chr6 18209630 18209689 -131307348 + T-rich Low_complexity Low_complexity 1 59 0 2 723 3053 190 85 16 chr6 18209826 18210458 -131306579 - Lx5 LINE L1 0 7050 6375 2 723 27 29 0 0 chr6 18210458 18210492 -131306545 + AT_rich Low_complexity Low_complexity 1 34 0 2 723 4962 138 49 17 chr6 18210501 18211365 -131305672 - Lx3B LINE L1 -3 6970 6080 2 723 11799 119 36 98 chr6 18211384 18213809 -131303228 - L1_Mur1 LINE L1 -85 5801 3527 2 723 6815 31 0 0 chr6 18214313 18215113 -131301924 - L1Md_T LINE L1 0 6582 5783 2 723 12431 18 0 0 chr6 18215113 18217226 -131299811 - L1Md_A LINE L1 -8 6574 4462 2 724 213 254 0 48 chr6 18219157 18219219 -131297818 + MIR SINE MIR 96 157 -111 2 724 748 276 35 0 chr6 18220472 18220671 -131296366 + B3 SINE B2 1 206 -10 2 724 863 262 168 13 chr6 18221247 18221556 -131295481 - ORR1E LTR MaLR -2 357 1 2 724 489 34 0 0 chr6 18221687 18221746 -131295291 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 2 724 23 0 0 0 chr6 18223417 18223440 -131293597 + AT_rich Low_complexity Low_complexity 1 23 0 2 724 730 289 83 67 chr6 18223864 18224176 -131292861 - MER2 DNA MER2_type 0 345 29 3 724 216 97 0 0 chr6 18229061 18229092 -131287945 + (TATAA)n Simple_repeat Simple_repeat 3 33 0 3 724 26 50 0 0 chr6 18229887 18229927 -131287110 + AT_rich Low_complexity Low_complexity 1 40 0 3 724 300 83 0 0 chr6 18230506 18230554 -131286483 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 724 299 194 41 0 chr6 18230690 18230788 -131286249 + CT-rich Low_complexity Low_complexity 3 104 0 3 724 715 291 61 0 chr6 18230790 18230986 -131286051 - B4A SINE B4 -83 209 2 3 724 5895 38 8 0 chr6 18231299 18232013 -131285024 - L1Md_F2 LINE L1 -1 6581 5862 3 724 29 28 0 0 chr6 18233238 18233274 -131283763 + AT_rich Low_complexity Low_complexity 1 36 0 3 724 201 163 0 0 chr6 18233517 18233566 -131283471 + CT-rich Low_complexity Low_complexity 2 50 0 3 724 720 98 48 6 chr6 18233571 18233736 -131283301 + (TA)n Simple_repeat Simple_repeat 2 173 0 3 724 546 16 0 0 chr6 18235156 18235219 -131281818 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 3 724 303 319 140 26 chr6 18235856 18236049 -131280988 - L1M5 LINE L1 -579 5661 5447 3 724 395 307 102 57 chr6 18236086 18236369 -131280668 - L1M5 LINE L1 -768 5378 5083 3 724 557 296 0 21 chr6 18236766 18236911 -131280126 - RSINE1 SINE B4 -20 145 4 3 724 711 260 9 67 chr6 18237415 18237625 -131279412 + RMER30 DNA MER1_type 4 201 -1 3 724 4778 64 63 5 chr6 18238771 18239433 -131277604 - Lx3_Mus LINE L1 -5 7004 6304 3 724 1133 50 0 75 chr6 18239433 18239607 -131277430 + Lx3_Mus LINE L1 6146 6306 -703 3 724 209 330 52 0 chr6 18239796 18239893 -131277144 + L2 LINE L2 1838 1939 -1480 3 724 214 357 69 19 chr6 18240063 18240223 -131276814 + L2 LINE L2 2261 2428 -991 3 724 402 316 19 32 chr6 18241053 18241207 -131275830 + MIR3 SINE MIR 42 193 -15 3 724 202 315 98 0 chr6 18241494 18241586 -131275451 + MIR3 SINE MIR 88 188 -20 3 724 449 268 84 0 chr6 18241783 18241925 -131275112 - MER58B DNA MER1_type 0 341 188 3 724 1224 266 118 30 chr6 18242366 18243020 -131274017 - Lx7 LINE L1 -397 7299 6589 3 724 934 266 30 0 chr6 18243070 18243273 -131273764 - B3 SINE B2 -7 209 1 3 724 347 321 119 108 chr6 18246393 18246746 -131270291 - ORR1E LTR MaLR -1 358 2 3 724 312 287 64 9 chr6 18246917 18247026 -131270011 + Arthur1C DNA Tip100 243 357 -6 3 724 216 189 36 36 chr6 18247497 18247552 -131269485 - PB1 SINE Alu -19 108 54 3 724 333 68 0 0 chr6 18248146 18248190 -131268847 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 724 512 313 58 40 chr6 18248423 18248646 -131268391 - RMER15 LTR ERVL -13 562 336 3 724 740 224 0 63 chr6 18249045 18249188 -131267849 + B1_Mur4 SINE Alu 14 147 -3 3 724 695 284 84 11 chr6 18250248 18250641 -131266396 - L1MCa LINE L1 -3840 2481 2058 3 724 471 291 107 37 chr6 18250745 18251045 -131265992 - L1MCa LINE L1 -4610 1898 1578 3 724 1057 66 0 0 chr6 18251117 18251253 -131265784 - B1_Mus1 SINE Alu 0 148 13 3 724 422 237 50 92 chr6 18251152 18251325 -131265712 - MT2B LTR ERVL -320 264 97 3 724 868 192 26 5 chr6 18251325 18251519 -131265518 + L1_Mur2 LINE L1 5114 5311 -566 3 724 930 294 147 94 chr6 18251567 18252944 -131264093 - L1MCa LINE L1 -5017 1491 43 3 724 712 185 131 0 chr6 18252948 18253078 -131263959 + B1_Mur4 SINE Alu 4 150 0 3 724 228 313 107 12 chr6 18254674 18254758 -131262279 + Charlie10 DNA MER1_type 16 107 -2715 3 724 234 91 0 0 chr6 18257412 18257445 -131259592 + (A)n Simple_repeat Simple_repeat 1 33 0 3 724 531 0 0 0 chr6 18257558 18257617 -131259420 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 724 515 289 14 14 chr6 18258360 18258504 -131258533 - RSINE1 SINE B4 -20 145 2 3 724 312 268 46 9 chr6 18259410 18259511 -131257526 + MIR SINE MIR 52 157 -105 3 724 803 123 138 0 chr6 18260235 18260365 -131256672 + B1_Mus1 SINE Alu 1 148 0 3 724 224 319 31 21 chr6 18261023 18261119 -131255918 + MIR3 SINE MIR 93 189 -19 3 724 219 103 0 0 chr6 18261614 18261653 -131255384 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 724 225 0 0 0 chr6 18261653 18261678 -131255359 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 724 256 259 17 0 chr6 18261678 18261736 -131255301 + GA-rich Low_complexity Low_complexity 2 60 0 3 724 651 314 53 14 chr6 18261947 18262154 -131254883 - ID_B1 SINE B4 -4 220 6 3 724 244 386 82 21 chr6 18262476 18262709 -131254328 - L2 LINE L2 -652 2767 2521 3 724 26 0 0 0 chr6 18263008 18263034 -131254003 + AT_rich Low_complexity Low_complexity 1 26 0 3 724 757 332 49 37 chr6 18263947 18264297 -131252740 - MLT1A0 LTR MaLR -5 360 7 3 724 272 351 27 0 chr6 18264316 18264427 -131252610 - MLT1A0-int LTR MaLR -12 1723 1610 3 724 28 0 0 0 chr6 18265306 18265334 -131251703 + AT_rich Low_complexity Low_complexity 1 28 0 3 724 3550 49 0 7 chr6 18265337 18265786 -131251251 - L1Md_F2 LINE L1 -3 6579 6134 3 724 436 106 24 0 chr6 18267010 18267095 -131249942 + (TGAA)n Simple_repeat Simple_repeat 3 89 0 3 724 214 170 43 0 chr6 18268574 18268621 -131248416 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 3 724 596 227 26 85 chr6 18271031 18271271 -131245766 + B4 SINE B4 29 292 0 3 724 23 33 0 0 chr6 18272432 18272462 -131244575 + AT_rich Low_complexity Low_complexity 1 30 0 3 724 1548 223 130 3 chr6 18272931 18273299 -131243738 + MTD LTR MaLR 5 419 0 3 724 2661 92 32 44 chr6 18273331 18273740 -131243297 + MTB_Mm LTR MaLR 1 404 -3 3 724 27210 73 16 5 chr6 18273740 18279003 -131238034 + L1Md_T LINE L1 241 5586 -297 3 724 8064 50 4 0 chr6 18279003 18279995 -131237042 + L1Md_T LINE L1 5587 6582 0 3 724 9252 101 15 7 chr6 18279997 18282184 -131234853 + L1_Mus3 LINE L1 4430 6638 0 3 724 578 297 72 36 chr6 18282222 18282610 -131234427 - L1MC1 LINE L1 -237 6096 5695 3 724 278 318 0 50 chr6 18282610 18282769 -131234268 + GA-rich Low_complexity Low_complexity 6 156 0 3 724 7429 97 13 5 chr6 18283357 18285012 -131232025 - L1_Mus4 LINE L1 0 6636 4972 3 724 316 319 44 9 chr6 18285460 18285574 -131231463 + MER5A DNA MER1_type 38 155 -34 3 724 605 279 75 32 chr6 18285999 18286599 -131230438 - L1MCa LINE L1 -3678 2643 2015 3 724 745 226 214 4 chr6 18286608 18286846 -131230191 + B4A SINE B4 5 292 0 3 724 869 283 81 59 chr6 18287015 18287359 -131229678 - L1MCa LINE L1 -4674 1834 1484 3 724 180 0 0 0 chr6 18287359 18287379 -131229658 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 724 869 283 81 59 chr6 18287379 18287553 -131229484 - L1MCa LINE L1 -5025 1483 1310 3 724 1095 78 114 0 chr6 18287553 18287720 -131229317 - L1_Mus3 LINE L1 -1 6637 6452 3 724 869 283 81 59 chr6 18287720 18287808 -131229229 - L1MCa LINE L1 -5199 1309 1215 3 724 299 259 63 80 chr6 18290220 18290438 -131226599 + L1_Rod LINE L1 5632 5812 -35 3 724 225 0 0 0 chr6 18290504 18290529 -131226508 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 724 206 322 69 75 chr6 18290718 18290906 -131226131 + MER5A DNA MER1_type 3 189 0 3 724 191 224 89 19 chr6 18291430 18291502 -131225535 - L2c LINE L2 -50 3376 3269 3 724 189 216 0 38 chr6 18291609 18291662 -131225375 - L2c LINE L2 -799 2620 2570 3 724 211 348 147 21 chr6 18292013 18292251 -131224786 - L2 LINE L2 -785 2634 2367 3 724 341 263 0 13 chr6 18292497 18292574 -131224463 - ID2 SINE ID -6 77 2 3 724 414 311 185 49 chr6 18292690 18293366 -131223671 - L2 LINE L2 -1227 2192 1425 3 724 793 214 7 0 chr6 18293446 18293591 -131223446 + B1_Mur3 SINE Alu 1 146 -3 3 724 226 298 0 0 chr6 18294005 18294062 -131222975 - L2 LINE L2 -2431 988 932 3 724 386 355 84 62 chr6 18294081 18294438 -131222599 - L2 LINE L2 -2599 820 456 3 724 27 0 0 0 chr6 18296408 18296435 -131220602 + AT_rich Low_complexity Low_complexity 1 27 0 3 724 2865 164 12 10 chr6 18296436 18296924 -131220113 - Lx4A LINE L1 -2 7056 6568 3 724 674 199 90 71 chr6 18297473 18297684 -131219353 + B3 SINE B2 2 216 0 3 724 256 330 0 39 chr6 18297730 18297834 -131219203 - MTEb LTR MaLR -12 367 268 3 724 378 0 0 0 chr6 18297921 18297963 -131219074 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 724 3387 147 81 9 chr6 18298202 18298772 -131218265 + RMER19C LTR ERVK 1 611 0 3 724 345 328 178 11 chr6 18298997 18299188 -131217849 - MLT1C LTR MaLR -19 448 226 3 724 484 309 29 14 chr6 18300382 18300520 -131216517 - ID_B1 SINE B4 -1 223 84 3 724 260 305 55 34 chr6 18300425 18300571 -131216466 - MT2B LTR ERVL -344 257 109 3 724 459 337 132 60 chr6 18300541 18300947 -131216090 - LTR16B LTR ERVL -17 446 12 3 724 6301 165 25 32 chr6 18301401 18301543 -131215494 + L1_Mur2 LINE L1 3914 4057 -1820 3 724 402 21 0 0 chr6 18301543 18301590 -131215447 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 724 6301 165 25 32 chr6 18301590 18302787 -131214250 + L1_Mur2 LINE L1 4058 5243 -634 3 724 725 298 36 0 chr6 18302791 18303016 -131214021 + Lx6 LINE L1 6132 6364 -686 3 724 5399 111 64 19 chr6 18303035 18303836 -131213201 + Lx LINE L1 5691 6508 -146 3 724 384 22 0 0 chr6 18303836 18303881 -131213156 + (TGAG)n Simple_repeat Simple_repeat 2 46 0 3 724 5399 111 64 19 chr6 18303881 18304002 -131213035 + Lx LINE L1 6509 6653 -1 3 724 1295 251 42 79 chr6 18304009 18304566 -131212471 + Lx6 LINE L1 6506 7435 -25 3 724 25 0 0 0 chr6 18305341 18305366 -131211671 + AT_rich Low_complexity Low_complexity 1 25 0 3 724 368 55 18 0 chr6 18305369 18305424 -131211613 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 724 785 264 28 42 chr6 18305490 18305707 -131211330 - B3 SINE B2 -1 215 2 3 724 543 308 29 128 chr6 18305707 18305937 -131211100 - B4A SINE B4 -60 232 27 3 724 3010 186 36 12 chr6 18308166 18309278 -131207759 - L1Md_F LINE L1 -2487 1330 178 3 724 313 317 126 16 chr6 18310872 18311055 -131205982 - LTR52 LTR ERVL -10 411 209 3 724 688 240 32 13 chr6 18311070 18311226 -131205811 + B3 SINE B2 57 215 -1 3 724 1583 226 97 65 chr6 18311887 18312297 -131204740 - L1MA8 LINE L1 -268 6023 5599 3 724 509 270 114 48 chr6 18312297 18312453 -131204584 - B4A SINE B4 0 292 134 3 724 234 0 0 0 chr6 18312453 18312479 -131204558 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 3 724 509 270 114 48 chr6 18312479 18312594 -131204443 - B4A SINE B4 -159 133 4 3 724 1583 232 102 55 chr6 18312594 18313035 -131204002 - L1MA8 LINE L1 -693 5598 5130 3 724 255 31 0 0 chr6 18313775 18313807 -131203230 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 724 189 0 0 0 chr6 18314071 18314092 -131202945 + (A)n Simple_repeat Simple_repeat 1 21 0 3 724 315 141 8 221 chr6 18314297 18314424 -131202613 - L1M2 LINE L1 -2998 3145 3046 3 724 236 224 0 0 chr6 18314463 18314512 -131202525 - MT2B2 LTR ERVL -293 291 243 3 724 271 251 129 45 chr6 18314512 18314819 -131202218 - L1M2 LINE L1 -3117 3026 2692 3 724 334 284 87 19 chr6 18315040 18315144 -131201893 - PB1D7 SINE Alu -9 111 1 4 724 396 0 0 0 chr6 18318126 18318170 -131198867 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 724 241 338 15 0 chr6 18318214 18318282 -131198755 - RSINE1 SINE B4 -29 136 68 4 724 204 383 51 17 chr6 18318524 18318641 -131198396 - L2a LINE L2 -9 3417 3297 4 724 320 206 159 45 chr6 18319084 18319216 -131197821 - MER5B DNA MER1_type -27 151 5 4 724 279 0 0 0 chr6 18319238 18319269 -131197768 + (T)n Simple_repeat Simple_repeat 1 31 0 4 724 180 0 0 0 chr6 18319646 18319666 -131197371 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 4 724 525 336 71 76 chr6 18320289 18320643 -131196394 + ORR1E LTR MaLR 8 359 0 4 724 652 299 150 25 chr6 18320762 18321088 -131195949 - MTEb LTR MaLR -3 376 10 4 724 272 304 14 0 chr6 18321142 18321211 -131195826 + ID4 SINE ID 11 80 -3 4 724 583 244 41 0 chr6 18321421 18321544 -131195493 - B3 SINE B2 -87 129 2 4 724 2878 48 0 0 chr6 18322024 18322375 -131194662 + L1Md_F2 LINE L1 6230 6580 -2 4 724 270 316 25 62 chr6 18323375 18323456 -131193581 - ID4_ SINE ID 0 83 6 4 724 304 207 52 0 chr6 18325518 18325576 -131191461 + ID4 SINE ID 8 68 -15 4 724 333 0 0 0 chr6 18325584 18325621 -131191416 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 724 822 218 44 55 chr6 18326399 18326671 -131190366 + Lx9 LINE L1 7197 7465 -179 4 724 901 183 40 6 chr6 18326726 18326902 -131190135 - URR1A DNA MER1_type 0 226 45 4 724 25 0 0 0 chr6 18326949 18326974 -131190063 + AT_rich Low_complexity Low_complexity 1 25 0 4 724 955 184 65 14 chr6 18327487 18327702 -131189335 - URR1A DNA MER1_type 0 226 1 4 724 915 41 0 47 chr6 18327769 18327896 -131189141 + B1_Mm SINE Alu 27 147 0 4 724 297 0 0 0 chr6 18327896 18327929 -131189108 + (A)n Simple_repeat Simple_repeat 1 33 0 4 724 721 100 0 0 chr6 18327938 18328038 -131188999 + B1_Mus1 SINE Alu 2 101 -47 4 724 210 37 0 0 chr6 18328497 18328524 -131188513 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 724 641 214 20 41 chr6 18329664 18329810 -131187227 - B1_Mur1 SINE Alu -6 143 1 4 724 705 297 63 59 chr6 18332262 18332700 -131184337 - MTC LTR MaLR 0 419 1 4 724 313 336 28 0 chr6 18333119 18333226 -131183811 - MIRb SINE MIR -103 165 56 4 724 289 212 179 2 chr6 18333226 18333336 -131183701 - L1MA7 LINE L1 -10 6302 6168 4 724 21 0 0 0 chr6 18333459 18333480 -131183557 + AT_rich Low_complexity Low_complexity 1 21 0 4 724 1081 205 60 0 chr6 18333500 18333700 -131183337 + B3 SINE B2 2 213 -3 4 724 643 248 19 25 chr6 18334928 18335085 -131181952 + B4 SINE B4 25 180 -112 4 724 21 0 0 0 chr6 18335503 18335524 -131181513 + AT_rich Low_complexity Low_complexity 1 21 0 4 724 26 0 0 0 chr6 18335865 18335891 -131181146 + AT_rich Low_complexity Low_complexity 1 26 0 4 724 622 0 26 0 chr6 18336447 18336525 -131180512 + (TC)n Simple_repeat Simple_repeat 2 81 0 4 724 242 229 0 0 chr6 18336936 18336984 -131180053 + Lx8 LINE L1 7096 7143 -330 4 724 3179 78 8 0 chr6 18339347 18339744 -131177293 + MTB LTR MaLR 1 400 0 4 724 28 79 0 0 chr6 18339984 18340047 -131176990 + AT_rich Low_complexity Low_complexity 1 63 0 4 724 9115 23 1 0 chr6 18341818 18343532 -131173505 - L1Md_T LINE L1 0 6582 4867 4 724 609 14 0 0 chr6 18344168 18344238 -131172799 + (TC)n Simple_repeat Simple_repeat 2 71 0 4 724 317 155 0 27 chr6 18345029 18345102 -131171935 + GA-rich Low_complexity Low_complexity 3 73 0 4 724 227 296 0 14 chr6 18346940 18347012 -131170025 + MER97c DNA MER1_type? 90 160 -930 4 724 508 255 261 25 chr6 18348932 18348965 -131168072 + MLT1A0 LTR MaLR 89 127 -281 4 724 2197 209 12 7 chr6 18348965 18349384 -131167653 + MTC LTR MaLR 1 421 0 4 724 749 239 89 19 chr6 18349384 18349596 -131167441 + MLT1A0 LTR MaLR 127 391 -17 4 725 1273 41 0 14 chr6 18350855 18351002 -131166035 - B1_Mus2 SINE Alu -2 145 1 4 725 372 218 0 60 chr6 18352275 18352358 -131164679 - PB1D7 SINE Alu 0 120 43 4 725 1721 194 143 14 chr6 18352443 18352814 -131164223 + MTC LTR MaLR 1 419 -2 4 725 1465 199 39 19 chr6 18352815 18353127 -131163910 + MTC-int LTR MaLR 2 319 -939 4 725 1357 228 120 3 chr6 18353144 18353444 -131163593 + MTC LTR MaLR 74 408 -13 4 725 263 290 119 35 chr6 18354175 18354318 -131162719 + MLT1J LTR MaLR 22 176 -336 4 725 2306 114 3 61 chr6 18354424 18354770 -131162267 + ORR1A2 LTR MaLR 2 327 0 4 725 188 307 38 62 chr6 18357714 18357794 -131159243 + MIRc SINE MIR 45 122 -146 4 725 252 0 0 0 chr6 18357880 18357908 -131159129 + (A)n Simple_repeat Simple_repeat 1 28 0 4 725 528 235 0 4 chr6 18359043 18359279 -131157758 + GA-rich Low_complexity Low_complexity 1 235 0 4 725 216 0 0 0 chr6 18359513 18359537 -131157500 + (A)n Simple_repeat Simple_repeat 1 24 0 4 725 316 300 141 5 chr6 18359769 18359960 -131157077 + Tigger13a DNA MER2_type 138 354 -417 4 725 389 256 130 13 chr6 18360252 18360406 -131156631 + Lx8 LINE L1 7300 7471 -2 4 725 423 0 0 0 chr6 18360421 18360468 -131156569 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 725 28 0 0 0 chr6 18360477 18360505 -131156532 + AT_rich Low_complexity Low_complexity 1 28 0 4 725 7163 72 40 6 chr6 18360548 18361557 -131155480 + L1_Mus1 LINE L1 5525 6567 0 4 725 195 302 34 34 chr6 18361796 18361885 -131155152 + L2 LINE L2 2291 2379 -1040 4 725 318 371 63 25 chr6 18361967 18362205 -131154832 + L2 LINE L2 2548 2794 -625 4 725 541 274 159 67 chr6 18362270 18362611 -131154426 - MTE2a LTR MaLR -5 374 33 4 725 916 293 251 17 chr6 18362611 18363237 -131153800 + Lx8 LINE L1 6564 7336 -137 4 725 381 275 54 0 chr6 18363300 18363427 -131153610 + PB1D7 SINE Alu 10 144 -5 4 725 224 186 22 44 chr6 18363440 18363530 -131153507 + GA-rich Low_complexity Low_complexity 3 90 0 4 725 507 73 0 0 chr6 18364482 18364550 -131152487 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 725 240 208 0 20 chr6 18364662 18364711 -131152326 - BC1_Mm scRNA scRNA -72 80 33 4 725 390 42 0 0 chr6 18365041 18365089 -131151948 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 725 401 289 17 17 chr6 18366207 18366323 -131150714 + B1F SINE Alu 8 123 -26 4 725 225 233 14 14 chr6 18366392 18366466 -131150571 + (TAAA)n Simple_repeat Simple_repeat 2 75 0 4 725 1042 26 0 0 chr6 18366671 18366788 -131150249 - L1Md_A LINE L1 -201 6381 6265 4 725 1699 46 0 0 chr6 18366788 18366984 -131150053 + L1Md_T LINE L1 6387 6582 0 4 725 1653 216 44 91 chr6 18367325 18367753 -131149284 - MTD LTR MaLR -2 417 10 4 725 348 111 0 0 chr6 18369380 18369434 -131147603 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 725 894 314 14 57 chr6 18369467 18369764 -131147273 - B4A SINE B4 -6 286 3 4 725 40 37 0 0 chr6 18370511 18370565 -131146472 + AT_rich Low_complexity Low_complexity 1 54 0 4 725 191 88 0 29 chr6 18371983 18372018 -131145019 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 4 725 324 200 72 10 chr6 18372115 18372213 -131144824 - PB1D9 SINE Alu -9 111 3 4 725 396 0 0 0 chr6 18372214 18372258 -131144779 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 725 341 243 27 0 chr6 18372977 18373051 -131143986 + B3 SINE B2 137 212 -4 4 725 24 32 0 0 chr6 18373052 18373083 -131143954 + AT_rich Low_complexity Low_complexity 1 31 0 4 725 663 301 36 63 chr6 18373463 18373715 -131143322 - MER2 DNA MER2_type 0 345 101 4 725 294 98 0 0 chr6 18374352 18374403 -131142634 + (A)n Simple_repeat Simple_repeat 1 51 0 4 725 194 57 57 0 chr6 18374838 18374873 -131142164 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 4 725 215 31 31 0 chr6 18377397 18377429 -131139608 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 4 725 261 140 0 0 chr6 18378226 18378283 -131138754 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 725 948 164 0 0 chr6 18379351 18379528 -131137509 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 725 21 0 0 0 chr6 18379641 18379662 -131137375 + AT_rich Low_complexity Low_complexity 1 21 0 4 725 414 0 0 0 chr6 18380483 18380529 -131136508 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 4 725 767 138 11 33 chr6 18380531 18380711 -131136326 + A-rich Low_complexity Low_complexity 3 178 0 4 725 229 250 0 0 chr6 18381358 18381398 -131135639 + ID4 SINE ID 12 51 -32 4 725 214 182 0 0 chr6 18381437 18381470 -131135567 + ID4 SINE ID 49 81 -2 4 725 342 123 0 0 chr6 18381882 18381939 -131135098 + (T)n Simple_repeat Simple_repeat 1 57 0 4 725 224 174 0 61 chr6 18383655 18383704 -131133333 + A-rich Low_complexity Low_complexity 2 47 0 4 725 1830 181 128 11 chr6 18386572 18386947 -131130090 + MTD LTR MaLR 1 419 0 4 725 249 283 73 86 chr6 18387006 18387049 -131129988 + L2b LINE L2 3278 3317 -109 4 725 1244 56 7 0 chr6 18387049 18387193 -131129844 + B1_Mm SINE Alu 1 145 -2 4 725 253 283 73 86 chr6 18387193 18387300 -131129737 + L2b LINE L2 3263 3426 0 4 725 1055 262 161 42 chr6 18387537 18387872 -131129165 + MTEa LTR MaLR 1 375 -4 4 725 819 281 32 0 chr6 18387924 18388141 -131128896 - L1MA4 LINE L1 -378 5922 5699 4 725 315 190 0 17 chr6 18388501 18388560 -131128477 + Tigger1 DNA MER2_type 40 97 -2321 4 725 698 279 104 26 chr6 18388998 18389267 -131127770 - B4A SINE B4 -1 291 2 4 725 380 265 10 10 chr6 18389399 18389502 -131127535 + PB1D10 SINE Alu 11 113 -4 4 725 482 295 0 35 chr6 18389812 18389956 -131127081 + ID_B1 SINE B4 78 216 -8 4 725 236 88 28 56 chr6 18389975 18390047 -131126990 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 4 725 231 301 0 52 chr6 18390108 18390185 -131126852 + ID4_ SINE ID 2 74 -9 4 725 218 224 102 0 chr6 18391405 18391454 -131125583 + ID4_ SINE ID 16 69 -14 5 725 549 44 0 0 chr6 18391467 18391535 -131125502 + (GGGA)n Simple_repeat Simple_repeat 4 71 0 5 725 207 0 0 0 chr6 18392289 18392312 -131124725 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 725 646 171 0 79 chr6 18392634 18392761 -131124276 + MT2A LTR ERVL 1 117 -416 5 725 230 167 35 35 chr6 18392761 18392848 -131124189 + (TTG)n Simple_repeat Simple_repeat 2 88 0 5 725 270 122 0 39 chr6 18393106 18393157 -131123880 - MT2B LTR ERVL -5 596 548 5 725 627 22 34 0 chr6 18393391 18393480 -131123557 + (TATG)n Simple_repeat Simple_repeat 3 94 0 5 725 189 0 0 0 chr6 18393855 18393876 -131123161 + (A)n Simple_repeat Simple_repeat 1 21 0 5 725 357 362 113 25 chr6 18394928 18395132 -131121905 + MLT1N2 LTR MaLR 2 223 -339 5 725 1231 41 0 0 chr6 18395382 18395528 -131121509 + B1_Mus2 SINE Alu 2 147 0 5 725 183 114 0 0 chr6 18395739 18395774 -131121263 + (A)n Simple_repeat Simple_repeat 1 35 0 5 725 183 156 0 0 chr6 18396639 18396671 -131120366 + A-rich Low_complexity Low_complexity 1 32 0 5 725 358 232 22 22 chr6 18397781 18397898 -131119139 - B1F SINE Alu 0 120 4 5 725 444 366 107 15 chr6 18399033 18399294 -131117743 + B4A SINE B4 6 290 -2 5 725 866 170 19 0 chr6 18399296 18399722 -131117315 + (CATATA)n Simple_repeat Simple_repeat 1 434 0 5 725 210 258 16 0 chr6 18399738 18399800 -131117237 + GA-rich Low_complexity Low_complexity 2 64 0 5 725 585 283 6 35 chr6 18399973 18400123 -131116914 + B3 SINE B2 41 185 -31 5 725 333 90 45 0 chr6 18400123 18400190 -131116847 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 5 725 585 283 6 35 chr6 18400190 18400211 -131116826 + B3 SINE B2 186 206 -10 5 725 22 56 0 0 chr6 18400487 18400523 -131116514 + AT_rich Low_complexity Low_complexity 1 36 0 5 725 216 0 0 0 chr6 18401059 18401083 -131115954 + (A)n Simple_repeat Simple_repeat 1 24 0 5 725 365 247 0 24 chr6 18402076 18402159 -131114878 - ID4 SINE ID -1 82 2 5 725 343 305 73 10 chr6 18402169 18402265 -131114772 - PB1D10 SINE Alu -14 103 2 5 725 778 164 6 12 chr6 18402289 18402450 -131114587 + CT-rich Low_complexity Low_complexity 1 160 0 5 725 274 272 0 12 chr6 18402461 18402543 -131114494 - Lx9 LINE L1 -604 7040 6960 5 725 293 297 0 0 chr6 18402646 18402710 -131114327 + ID4_ SINE ID 15 78 -5 5 725 1518 67 0 0 chr6 18402772 18402965 -131114072 - B2_Mm1t SINE B2 0 193 1 5 725 315 71 0 0 chr6 18403218 18403260 -131113777 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 5 725 253 182 0 0 chr6 18404106 18404150 -131112887 - U2 snRNA snRNA -144 44 1 5 725 341 219 0 47 chr6 18404267 18404353 -131112684 - MTE2a LTR MaLR -13 366 285 5 725 306 164 0 0 chr6 18404857 18404912 -131112125 + GA-rich Low_complexity Low_complexity 1 55 0 5 725 244 258 61 0 chr6 18405407 18405473 -131111564 + ORR1E LTR MaLR 51 120 -239 5 725 726 256 108 0 chr6 18405901 18406077 -131110960 - ID_B1 SINE B4 -28 196 2 5 725 223 327 100 55 chr6 18406111 18406221 -131110816 + FAM SINE Alu 137 251 -60 5 725 1282 218 69 23 chr6 18406521 18406868 -131110169 - ORR1D2 LTR MaLR -3 367 5 5 725 21 0 0 0 chr6 18407053 18407074 -131109963 + AT_rich Low_complexity Low_complexity 1 21 0 5 725 368 310 78 15 chr6 18407734 18407932 -131109105 - MIR SINE MIR -48 220 17 5 725 240 0 75 0 chr6 18408020 18408060 -131108977 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 5 725 1202 35 0 14 chr6 18409540 18409687 -131107350 + B1_Mm SINE Alu 3 147 0 5 725 267 31 0 0 chr6 18409706 18409738 -131107299 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 725 26 50 0 0 chr6 18410600 18410640 -131106397 + AT_rich Low_complexity Low_complexity 1 40 0 5 725 314 274 102 19 chr6 18411171 18411279 -131105758 - PB1D7 SINE Alu -3 117 1 5 725 3128 181 68 6 chr6 18411480 18412130 -131104907 + RMER6C LTR ERVK 1 690 0 5 725 271 241 17 26 chr6 18412263 18412378 -131104659 - Lx9 LINE L1 -5 7639 7526 5 725 345 228 268 30 chr6 18412462 18412701 -131104336 - L1M5 LINE L1 -1198 4948 4653 5 725 294 221 91 40 chr6 18412742 18412841 -131104196 + MT2B LTR ERVL 155 258 -343 5 725 807 83 0 0 chr6 18412771 18412879 -131104158 + B1_Mus2 SINE Alu 34 141 -6 5 725 3044 35 29 0 chr6 18412879 18413253 -131103784 + L1Md_F3 LINE L1 6199 6583 -1 5 725 234 224 190 41 chr6 18413253 18413267 -131103770 + FAM SINE Alu 300 310 -1 5 725 262 230 42 0 chr6 18413537 18413610 -131103427 + B1F1 SINE Alu 14 93 -56 5 725 386 345 89 26 chr6 18413620 18413891 -131103146 - L1M5 LINE L1 -1839 4307 4020 5 725 330 139 0 0 chr6 18415452 18415524 -131101513 + (T)n Simple_repeat Simple_repeat 1 72 0 5 725 502 56 0 0 chr6 18415526 18415598 -131101439 - L1Md_A LINE L1 0 6582 6511 5 725 414 283 20 10 chr6 18417525 18417625 -131099412 - B1F SINE Alu -22 127 27 5 725 1886 150 28 63 chr6 18418088 18418575 -131098462 + RMER17C LTR ERVK 16 439 -519 5 725 336 48 0 0 chr6 18419183 18419225 -131097812 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 725 407 229 95 0 chr6 18419582 18419687 -131097350 + MER2 DNA MER2_type 98 212 -133 5 725 394 288 103 69 chr6 18421370 18421545 -131095492 + MER2 DNA MER2_type 139 319 -26 5 725 267 235 44 0 chr6 18421711 18421779 -131095258 - ID4 SINE ID -12 71 1 5 725 272 353 104 0 chr6 18422716 18422894 -131094143 + MIRb SINE MIR 32 229 -39 5 725 247 305 42 78 chr6 18423212 18423354 -131093683 + MLT1K LTR MaLR 393 529 -66 5 725 237 65 0 0 chr6 18424263 18424294 -131092743 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 725 21 71 0 0 chr6 18424325 18424367 -131092670 + AT_rich Low_complexity Low_complexity 1 42 0 5 725 522 46 0 0 chr6 18425240 18425305 -131091732 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 5 725 265 213 173 0 chr6 18425306 18425381 -131091656 + Tigger7 DNA MER2_type 11 98 -2393 5 725 517 209 95 35 chr6 18425370 18425539 -131091498 + Tigger7 DNA MER2_type 2270 2448 -43 5 725 22 0 0 0 chr6 18425803 18425825 -131091212 + AT_rich Low_complexity Low_complexity 1 22 0 5 725 1238 41 0 0 chr6 18426947 18427094 -131089943 + B1_Mm SINE Alu 1 147 0 5 725 288 68 0 63 chr6 18427097 18427160 -131089877 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 5 725 564 282 27 48 chr6 18427649 18427835 -131089202 + B3A SINE B2 3 184 -14 5 725 564 279 173 29 chr6 18428551 18428857 -131088180 + Lx8 LINE L1 6912 7261 -212 5 725 22 0 0 0 chr6 18429139 18429161 -131087876 + AT_rich Low_complexity Low_complexity 1 22 0 5 725 1119 196 0 15 chr6 18429169 18429371 -131087666 + B3 SINE B2 1 199 -17 5 725 281 47 23 0 chr6 18429372 18429415 -131087622 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 5 725 25 31 0 0 chr6 18429451 18429483 -131087554 + AT_rich Low_complexity Low_complexity 1 32 0 5 725 657 56 0 0 chr6 18430031 18430121 -131086916 + (GA)n Simple_repeat Simple_repeat 1 90 0 5 725 502 195 15 35 chr6 18430389 18430510 -131086527 + B1_Mus2 SINE Alu 13 140 -9 5 725 189 0 0 0 chr6 18430523 18430544 -131086493 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 725 507 208 0 0 chr6 18430678 18430798 -131086239 + GA-rich Low_complexity Low_complexity 2 121 0 5 725 2581 77 3 0 chr6 18430826 18431152 -131085885 + ORR1A2 LTR MaLR 1 327 0 5 725 248 318 0 23 chr6 18431279 18431366 -131085671 + MLT1D LTR MaLR 417 501 -4 5 725 509 343 123 40 chr6 18431697 18432296 -131084741 - L2 LINE L2 -1672 1747 1099 5 725 293 393 0 0 chr6 18432745 18432890 -131084147 + Lx8 LINE L1 7084 7228 -245 5 725 21 36 0 0 chr6 18433100 18433128 -131083909 + AT_rich Low_complexity Low_complexity 1 28 0 5 725 35 24 0 0 chr6 18433575 18433617 -131083420 + AT_rich Low_complexity Low_complexity 1 42 0 5 725 207 0 0 0 chr6 18434618 18434641 -131082396 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 5 725 212 184 0 0 chr6 18434681 18434719 -131082318 + T-rich Low_complexity Low_complexity 1 38 0 5 725 590 236 35 29 chr6 18435287 18435457 -131081580 - MER5A DNA MER1_type -18 171 1 5 725 270 304 96 21 chr6 18435650 18435744 -131081293 - PB1D10 SINE Alu -5 112 12 5 725 208 348 22 0 chr6 18436121 18436213 -131080824 + MIR SINE MIR 141 234 -28 5 725 249 287 173 24 chr6 18436243 18436411 -131080626 + MLT1G LTR MaLR 23 215 -376 5 725 308 284 148 0 chr6 18437809 18437890 -131079147 - PB1D10 SINE Alu -18 99 7 5 725 819 269 45 5 chr6 18438021 18438219 -131078818 + B3 SINE B2 1 206 -10 5 725 1900 99 37 23 chr6 18438392 18438652 -131078385 - ORR1A2 LTR MaLR -24 303 39 5 725 1981 175 48 78 chr6 18438652 18439112 -131077925 + RLTR41 LTR ERV1 1 446 0 5 725 1900 99 37 23 chr6 18439112 18439150 -131077887 - ORR1A2 LTR MaLR -289 38 1 5 725 549 0 0 0 chr6 18439273 18439334 -131077703 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 725 23 0 0 0 chr6 18439358 18439381 -131077656 + AT_rich Low_complexity Low_complexity 1 23 0 5 725 1108 50 0 14 chr6 18439392 18439535 -131077502 + B1_Mm SINE Alu 1 141 -6 5 725 369 0 0 0 chr6 18439549 18439590 -131077447 + (CAA)n Simple_repeat Simple_repeat 2 42 0 5 725 251 317 24 12 chr6 18441638 18441721 -131075316 + PB1 SINE Alu 42 125 -2 5 725 891 292 82 29 chr6 18442976 18443354 -131073683 + MER57D LTR ERV1 10 407 -4 5 725 3247 115 92 12 chr6 18443589 18444091 -131072946 + Lx4A LINE L1 6517 7058 0 5 725 27 29 0 0 chr6 18444091 18444125 -131072912 + AT_rich Low_complexity Low_complexity 1 34 0 5 725 344 264 64 17 chr6 18444131 18444245 -131072792 + PB1 SINE Alu 2 122 -5 5 725 372 256 0 35 chr6 18444255 18444296 -131072741 + ID4 SINE ID 2 42 -41 6 725 1301 209 189 14 chr6 18444296 18444651 -131072386 + MTD LTR MaLR 3 419 0 6 725 372 262 4 42 chr6 18444651 18444726 -131072311 + ID4 SINE ID 43 113 -39 6 725 186 43 0 0 chr6 18445439 18445462 -131071575 + (T)n Simple_repeat Simple_repeat 1 23 0 6 725 244 351 0 49 chr6 18446209 18446290 -131070747 + ID4_ SINE ID 1 77 -6 6 725 391 289 54 99 chr6 18446593 18446816 -131070221 + MER20 DNA MER1_type 2 214 -5 6 725 185 0 40 0 chr6 18447107 18447132 -131069905 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 6 725 2589 43 0 3 chr6 18447136 18447438 -131069599 - L1Md_F2 LINE L1 -12 6570 6270 6 725 349 252 92 18 chr6 18447458 18447567 -131069470 - PB1D10 SINE Alu 0 117 1 6 725 21 0 0 0 chr6 18448117 18448138 -131068899 + AT_rich Low_complexity Low_complexity 1 21 0 6 725 1189 72 0 0 chr6 18448161 18448299 -131068738 - B1_Mus1 SINE Alu -10 138 1 6 725 292 251 14 81 chr6 18448358 18448482 -131068555 + B1F1 SINE Alu 5 114 -13 6 725 403 154 120 17 chr6 18449517 18449625 -131067412 - B1_Mm SINE Alu -1 147 34 6 725 22 0 0 0 chr6 18449725 18449747 -131067290 + AT_rich Low_complexity Low_complexity 1 22 0 6 725 355 282 0 64 chr6 18449817 18449942 -131067095 - PB1D10 SINE Alu 0 117 1 6 725 258 278 184 77 chr6 18449952 18450120 -131066917 + MER20B DNA MER1_type 367 552 -231 6 725 353 169 78 0 chr6 18450165 18450242 -131066795 - Lx7 LINE L1 0 7696 7614 6 725 257 297 81 85 chr6 18452744 18452998 -131064039 + MER102a DNA MER1_type 1 254 -76 6 725 387 0 0 0 chr6 18453004 18453047 -131063990 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 725 222 37 0 0 chr6 18453047 18453073 -131063964 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 725 214 330 87 0 chr6 18453721 18453836 -131063201 - MIRb SINE MIR -114 154 30 6 725 300 242 162 36 chr6 18454288 18454455 -131062582 - MER5A DNA MER1_type 0 189 2 6 725 191 402 20 0 chr6 18454466 18454568 -131062469 + MIRb SINE MIR 127 230 -38 6 725 463 202 0 17 chr6 18455090 18455206 -131061831 + GA-rich Low_complexity Low_complexity 2 115 0 6 725 549 80 0 0 chr6 18455613 18455688 -131061349 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 725 322 194 14 43 chr6 18455741 18455811 -131061226 - ID4 SINE ID -15 68 1 6 725 395 313 30 8 chr6 18455826 18455958 -131061079 - B1F SINE Alu -10 139 5 6 725 513 319 114 19 chr6 18456453 18456684 -131060353 - MTD LTR MaLR -167 252 1 6 725 184 368 0 0 chr6 18456948 18457024 -131060013 + MIR3 SINE MIR 94 169 -39 6 725 359 248 78 52 chr6 18457494 18457609 -131059428 + PB1D7 SINE Alu 3 120 0 6 725 486 0 0 0 chr6 18457625 18457679 -131059358 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 725 233 163 0 20 chr6 18459027 18459077 -131057960 + GA-rich Low_complexity Low_complexity 3 51 0 6 725 407 294 65 46 chr6 18459122 18459275 -131057762 - B4 SINE B4 -65 227 72 6 725 3056 40 0 14 chr6 18459604 18459955 -131057082 + ORR1A1 LTR MaLR 1 346 0 6 725 1232 74 0 0 chr6 18460091 18460230 -131056807 + B1_Mus1 SINE Alu 1 139 -9 6 725 351 0 0 0 chr6 18460230 18460269 -131056768 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 725 712 230 7 7 chr6 18460376 18460525 -131056512 + RSINE1 SINE B4 2 150 -15 6 725 213 39 0 0 chr6 18462371 18462397 -131054640 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 725 384 77 0 0 chr6 18462397 18462449 -131054588 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 725 222 37 0 0 chr6 18462689 18462716 -131054321 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 725 216 0 0 0 chr6 18462779 18462803 -131054234 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 725 198 0 0 0 chr6 18463536 18463558 -131053479 + (T)n Simple_repeat Simple_repeat 1 22 0 6 725 22 0 0 0 chr6 18465721 18465743 -131051294 + AT_rich Low_complexity Low_complexity 1 22 0 6 725 267 103 0 0 chr6 18465882 18465921 -131051116 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 725 943 114 29 0 chr6 18467456 18467631 -131049406 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 725 274 23 91 23 chr6 18468491 18468535 -131048502 - MT2A LTR ERVL 0 533 487 6 725 2482 181 48 19 chr6 18468626 18469106 -131047931 - MT2A LTR ERVL -37 496 3 6 725 486 315 34 20 chr6 18469201 18469251 -131047786 - B1F SINE Alu -1 148 102 6 725 4106 154 48 29 chr6 18469251 18469953 -131047084 - RMER6D LTR ERVK -4 716 1 6 725 486 315 34 20 chr6 18469953 18470048 -131046989 - B1F SINE Alu -48 101 2 6 725 202 146 24 0 chr6 18470885 18470926 -131046111 + A-rich Low_complexity Low_complexity 3 44 0 6 725 2110 133 0 69 chr6 18471384 18471732 -131045305 + ORR1A3 LTR MaLR 3 326 0 6 725 198 0 0 0 chr6 18471908 18471930 -131045107 + (T)n Simple_repeat Simple_repeat 1 22 0 6 725 204 139 28 0 chr6 18472184 18472220 -131044817 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 6 725 217 0 61 0 chr6 18472895 18472928 -131044109 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 6 725 367 268 10 10 chr6 18473224 18473322 -131043715 - Charlie4a DNA MER1_type -13 495 398 6 725 336 317 83 64 chr6 18473395 18473708 -131043329 - Charlie4a DNA MER1_type -106 402 84 6 725 411 68 0 0 chr6 18473769 18473828 -131043209 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 6 725 320 282 0 27 chr6 18473867 18473940 -131043097 - B4A SINE B4 -99 193 123 6 725 21 0 0 0 chr6 18474096 18474117 -131042920 + AT_rich Low_complexity Low_complexity 1 21 0 6 725 318 106 0 0 chr6 18474551 18474598 -131042439 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 725 879 329 46 28 chr6 18474603 18474668 -131042369 - B4A SINE B4 0 292 236 6 725 2487 157 63 8 chr6 18474668 18475066 -131041971 - MTC LTR MaLR 0 421 2 6 725 879 329 46 28 chr6 18475066 18475285 -131041752 - B4A SINE B4 -57 235 4 6 725 616 310 68 108 chr6 18476103 18476280 -131040757 - MLT1A LTR MaLR -1 373 194 6 725 414 0 0 0 chr6 18476280 18476326 -131040711 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 725 616 310 68 108 chr6 18476326 18476517 -131040520 - MLT1A LTR MaLR -181 193 20 6 725 197 182 0 18 chr6 18477599 18477655 -131039382 + G-rich Low_complexity Low_complexity 1 55 0 6 725 261 260 14 0 chr6 18477820 18477893 -131039144 - MER102a DNA MER1_type -160 170 97 6 725 21 0 0 0 chr6 18478722 18478743 -131038294 + AT_rich Low_complexity Low_complexity 1 21 0 6 725 411 269 115 60 chr6 18479483 18479551 -131037486 - MTE2a LTR MaLR -15 364 284 6 725 495 0 0 0 chr6 18479551 18479606 -131037431 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 6 725 411 297 110 55 chr6 18479606 18479847 -131037190 - MTE2a LTR MaLR -96 283 1 6 725 241 336 22 45 chr6 18480018 18480152 -131036885 - LTR85c LTR Gypsy? -38 785 655 6 725 186 133 0 0 chr6 18480258 18480288 -131036749 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 6 726 480 241 35 69 chr6 18481858 18481974 -131035063 + PB1D10 SINE Alu 6 117 0 6 726 306 167 0 0 chr6 18482142 18482190 -131034847 - HAL1-3A_ME LINE L1 -836 2022 1975 6 726 426 283 85 21 chr6 18482300 18482441 -131034596 + MER58A DNA MER1_type 71 220 -4 6 726 3359 116 72 20 chr6 18482916 18483298 -131033739 + Lx LINE L1 6116 6518 -136 6 726 243 61 0 0 chr6 18483298 18483331 -131033706 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 6 726 3359 116 72 20 chr6 18483331 18483458 -131033579 + Lx LINE L1 6519 6651 -3 6 726 342 0 0 0 chr6 18483468 18483506 -131033531 + (A)n Simple_repeat Simple_repeat 1 38 0 6 726 480 276 47 34 chr6 18483948 18484193 -131032844 - Lx8 LINE L1 -1674 5970 5721 6 726 624 196 142 61 chr6 18484200 18484412 -131032625 - Lx7 LINE L1 0 7696 7468 6 726 3425 236 62 16 chr6 18484413 18485231 -131031806 + RMER1C Other Other 449 1304 -38 6 726 390 143 165 12 chr6 18485228 18485252 -131031785 - Lx7 LINE L1 -307 7389 7355 6 726 396 0 0 0 chr6 18485252 18485296 -131031741 + (TAA)n Simple_repeat Simple_repeat 3 46 0 6 726 390 143 165 12 chr6 18485296 18485356 -131031681 - Lx7 LINE L1 -342 7354 7292 6 726 489 207 107 8 chr6 18485351 18485473 -131031564 + L1_Mur3 LINE L1 4905 5038 -842 6 726 633 275 42 58 chr6 18485474 18485516 -131031521 - L1_Mur3 LINE L1 -515 5782 5746 6 726 3710 28 0 0 chr6 18485516 18485912 -131031125 + MTA_Mm LTR MaLR 1 396 0 6 726 633 275 42 58 chr6 18485912 18486182 -131030855 - L1_Mur3 LINE L1 -552 5745 5475 6 726 645 152 71 0 chr6 18486186 18486298 -131030739 - B1_Mus1 SINE Alu -1 147 28 6 726 603 118 0 41 chr6 18486321 18486418 -131030619 - B2_Mm2 SINE B2 -102 93 1 6 726 804 50 0 0 chr6 18486423 18486524 -131030513 + (TTCTC)n Simple_repeat Simple_repeat 5 105 0 6 726 4696 115 64 4 chr6 18486547 18487238 -131029799 - Lx3B LINE L1 -4 6969 6238 6 726 732 288 37 27 chr6 18487238 18487650 -131029387 - L1_Mur3 LINE L1 -812 5491 5014 6 726 232 308 0 0 chr6 18487703 18487755 -131029282 + RSINE1 SINE B4 6 57 -108 6 726 464 351 25 49 chr6 18487753 18487915 -131029122 + RSINE1 SINE B4 6 163 -2 6 726 263 62 111 12 chr6 18488022 18488103 -131028934 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 726 634 307 32 27 chr6 18488103 18488144 -131028893 - L1_Mur3 LINE L1 -1144 4999 4964 6 726 2433 100 25 0 chr6 18488144 18488463 -131028574 - ORR1A2 LTR MaLR 0 327 1 6 726 634 307 32 27 chr6 18488463 18488642 -131028395 - L1_Mur3 LINE L1 -1180 4963 4778 6 726 565 254 111 17 chr6 18488642 18488814 -131028223 + ID_B1 SINE B4 37 224 0 6 726 459 259 50 14 chr6 18489095 18489236 -131027801 - ID_B1 SINE B4 -1 223 78 6 726 290 263 17 51 chr6 18489412 18489517 -131027520 + PB1D10 SINE Alu 29 131 -19 6 726 180 0 0 0 chr6 18489569 18489589 -131027448 + (T)n Simple_repeat Simple_repeat 1 20 0 6 726 1096 266 78 64 chr6 18489915 18490347 -131026690 + MER31B LTR ERV1 8 429 -37 6 726 485 305 20 13 chr6 18491077 18491230 -131025807 - MER5A1 DNA MER1_type -1 165 12 6 726 380 284 128 0 chr6 18491386 18491488 -131025549 - RSINE1 SINE B4 -48 117 3 6 726 364 287 117 11 chr6 18491854 18492041 -131024996 - MIRb SINE MIR -3 265 50 6 726 183 42 0 0 chr6 18492145 18492169 -131024868 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 6 726 309 287 30 69 chr6 18492320 18492421 -131024616 - MER20 DNA MER1_type -122 97 1 6 726 339 85 0 0 chr6 18492638 18492685 -131024352 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 726 234 0 0 0 chr6 18492721 18492747 -131024290 + (T)n Simple_repeat Simple_repeat 1 26 0 7 726 298 273 109 0 chr6 18493904 18494021 -131023016 + L2b LINE L2 3241 3382 -5 7 726 372 340 106 6 chr6 18495116 18495276 -131021761 - MLT1D LTR MaLR -3 464 289 7 726 567 243 59 27 chr6 18495318 18495504 -131021533 - MLT1D LTR MaLR -279 226 35 7 726 745 133 15 0 chr6 18495639 18495774 -131021263 + (TC)n Simple_repeat Simple_repeat 2 138 0 7 726 201 74 0 0 chr6 18495784 18495811 -131021226 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 726 448 282 0 64 chr6 18496187 18496312 -131020725 - PB1D10 SINE Alu 0 117 1 7 726 2171 146 20 12 chr6 18496851 18497197 -131019840 + Lx4A LINE L1 6709 7057 -1 7 726 26 0 0 0 chr6 18497201 18497227 -131019810 + AT_rich Low_complexity Low_complexity 1 26 0 7 726 419 233 129 23 chr6 18498943 18499075 -131017962 + B4A SINE B4 108 253 -39 7 726 456 35 0 0 chr6 18499109 18499167 -131017870 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 726 522 0 0 0 chr6 18500871 18500929 -131016108 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 726 388 264 47 0 chr6 18501318 18501424 -131015613 + MTD LTR MaLR 1 111 -308 2 726 408 300 5 40 chr6 18501446 18501562 -131015475 - B1_Mur3 SINE Alu -33 116 1 3 726 892 221 143 16 chr6 18501569 18501813 -131015224 + MTD LTR MaLR 131 405 -14 2 726 522 70 0 0 chr6 18502226 18502297 -131014740 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 726 458 301 79 22 chr6 18502324 18502463 -131014574 - RSINE1 SINE B4 -17 148 2 5 726 279 88 29 29 chr6 18502500 18502570 -131014467 + (CAAAAA)n Simple_repeat Simple_repeat 1 70 0 6 726 609 291 0 26 chr6 18503039 18503191 -131013846 - B1F2 SINE Alu -1 148 1 7 726 803 264 56 6 chr6 18503545 18503724 -131013313 - ID_B1 SINE B4 -35 189 2 8 726 3120 116 17 21 chr6 18504917 18505447 -131011590 - RLTR11A LTR ERVK 0 528 1 9 726 1990 141 0 63 chr6 18505510 18505858 -131011179 + ORR1A3 LTR MaLR 1 326 0 1 726 258 262 129 15 chr6 18506403 18506535 -131010502 - Lx6 LINE L1 -3 7457 7311 1 726 360 0 0 0 chr6 18506555 18506595 -131010442 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 726 1558 211 101 13 chr6 18506656 18507041 -131009996 - Lx7 LINE L1 -331 7365 6947 1 726 210 143 0 0 chr6 18507214 18507249 -131009788 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 726 232 200 0 24 chr6 18507848 18507930 -131009107 - Lx6 LINE L1 -36 7424 7345 1 726 359 196 165 10 chr6 18507935 18508038 -131008999 - ORR1B2 LTR MaLR -56 311 193 1 726 403 238 0 45 chr6 18508090 18508200 -131008837 + Lx6 LINE L1 7200 7304 -156 1 726 941 126 19 0 chr6 18508343 18508502 -131008535 + (GGAGAA)n Simple_repeat Simple_repeat 3 164 0 1 726 367 151 0 0 chr6 18508656 18508729 -131008308 - L1_Mur2 LINE L1 -1702 4175 4103 1 726 225 282 42 83 chr6 18508942 18509062 -131007975 - PB1D10 SINE Alu 0 117 3 2 726 414 347 66 23 chr6 18509084 18509341 -131007696 - L1ME1 LINE L1 -296 5883 5616 2 726 707 176 38 8 chr6 18509382 18509575 -131007462 + ORR1C1 LTR MaLR 125 378 0 2 726 326 219 0 121 chr6 18509677 18509760 -131007277 + MT2B LTR ERVL 167 239 -362 2 726 812 203 7 7 chr6 18509687 18509826 -131007211 + B1_Mur2 SINE Alu 11 149 0 2 726 187 122 41 0 chr6 18509854 18509903 -131007134 + (CAA)n Simple_repeat Simple_repeat 1 51 0 2 726 809 61 26 0 chr6 18510018 18510132 -131006905 + (TTCTC)n Simple_repeat Simple_repeat 3 119 0 2 726 458 291 127 37 chr6 18510135 18510435 -131006602 - L1MEf LINE L1 -2898 3248 2922 2 726 682 179 34 0 chr6 18510466 18510583 -131006454 + B1_Mur4 SINE Alu 1 121 -29 2 726 629 285 49 31 chr6 18510673 18511077 -131005960 - L1MEf LINE L1 -3278 2868 2447 2 726 423 106 0 0 chr6 18511192 18511258 -131005779 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 726 370 293 122 55 chr6 18511274 18511952 -131005085 - L1MEf LINE L1 -3983 2259 1536 2 726 186 143 0 0 chr6 18512618 18512653 -131004384 + (T)n Simple_repeat Simple_repeat 1 35 0 3 726 6802 68 55 8 chr6 18512658 18513806 -131003231 - L1_Mus1 LINE L1 0 6567 5393 3 726 375 23 0 0 chr6 18513807 18513851 -131003186 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 726 725 291 96 31 chr6 18513905 18514196 -131002841 - MLT2B2 LTR ERVL -171 344 35 3 726 324 256 66 0 chr6 18515091 18515212 -131001825 - MER33 DNA MER1_type -166 158 30 3 726 475 180 93 0 chr6 18516461 18516611 -131000426 + Lx9 LINE L1 7481 7644 0 3 726 927 109 0 0 chr6 18516893 18517031 -131000006 + (TTTC)n Simple_repeat Simple_repeat 2 139 0 3 726 454 368 37 107 chr6 18517110 18517244 -130999793 - MLT1-int LTR MaLR -497 874 741 3 726 1159 68 0 7 chr6 18517244 18517255 -130999782 - B1_Mus1 SINE Alu 0 148 138 3 726 302 42 0 41 chr6 18517255 18517304 -130999733 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 726 1159 68 0 7 chr6 18517304 18517441 -130999596 - B1_Mus1 SINE Alu -11 137 1 3 726 454 368 37 107 chr6 18517441 18517708 -130999329 - MLT1-int LTR MaLR -631 740 501 3 726 843 177 0 72 chr6 18517837 18518032 -130999005 - Lx4B LINE L1 -7 7051 6871 4 726 1260 156 26 30 chr6 18518401 18518665 -130998372 - L1_Mus4 LINE L1 -1 6635 6373 4 726 1539 42 16 0 chr6 18519608 18519797 -130997240 - B2_Mm1t SINE B2 0 193 2 4 726 1878 121 8 172 chr6 18520178 18520485 -130996552 + ORR1A2 LTR MaLR 1 272 -55 4 726 1217 54 0 0 chr6 18520485 18520632 -130996405 + B1_Mm SINE Alu 1 147 0 4 726 1878 121 8 172 chr6 18520632 18520714 -130996323 + ORR1A2 LTR MaLR 273 326 -1 4 726 351 0 0 0 chr6 18520714 18520753 -130996284 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 4 726 27 0 0 0 chr6 18521073 18521100 -130995937 + AT_rich Low_complexity Low_complexity 1 27 0 4 726 256 356 0 11 chr6 18521115 18521203 -130995834 + MIRc SINE MIR 72 158 -110 4 726 193 261 0 21 chr6 18521502 18521549 -130995488 - L2c LINE L2 -234 3153 3108 4 726 5962 30 18 0 chr6 18521550 18522257 -130994780 + L1Md_F2 LINE L1 5862 6581 -1 4 726 462 304 21 35 chr6 18522498 18522641 -130994396 + ORR1E LTR MaLR 1 141 -218 5 726 737 318 11 0 chr6 18524395 18524584 -130992453 - B4 SINE B4 -100 192 2 5 726 610 208 13 71 chr6 18524995 18525150 -130991887 - B1_Mus1 SINE Alu -1 147 2 5 726 1473 228 52 55 chr6 18525782 18526149 -130990888 + ORR1D1 LTR MaLR 1 366 -8 5 726 276 344 90 7 chr6 18526176 18526331 -130990706 - LTR88b LTR Gypsy? -654 183 16 5 726 330 26 0 0 chr6 18526342 18526381 -130990656 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 726 279 0 0 0 chr6 18526798 18526829 -130990208 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 726 302 343 9 45 chr6 18526886 18526996 -130990041 - MER63A DNA AcHobo -90 120 15 5 726 189 302 77 55 chr6 18527335 18527426 -130989611 + MIR SINE MIR 33 125 -137 5 726 330 26 0 0 chr6 18529411 18529450 -130987587 + (T)n Simple_repeat Simple_repeat 1 39 0 5 726 28 0 0 0 chr6 18529676 18529704 -130987333 + AT_rich Low_complexity Low_complexity 1 28 0 6 726 36266 32 1 0 chr6 18529736 18537454 -130979583 - L1Md_T LINE L1 0 6585 1 6 726 623 387 32 19 chr6 18538289 18538605 -130978432 + LTR16A LTR ERVL 14 333 -118 6 726 928 132 29 0 chr6 18539794 18539930 -130977107 - B1_Mus1 SINE Alu -8 140 1 6 726 427 222 96 83 chr6 18540208 18540365 -130976672 - MER2 DNA MER2_type -18 327 169 6 726 342 152 0 0 chr6 18540537 18540596 -130976441 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 726 395 299 149 0 chr6 18540709 18540843 -130976194 - MER2 DNA MER2_type -185 160 7 6 726 227 231 40 99 chr6 18540989 18541090 -130975947 + Charlie13a DNA Charlie 711 805 -709 6 726 202 163 23 23 chr6 18542196 18542240 -130974797 + CT-rich Low_complexity Low_complexity 2 45 0 6 726 335 350 82 19 chr6 18542248 18542455 -130974582 - MIR SINE MIR -24 238 19 6 726 222 37 0 0 chr6 18542532 18542559 -130974478 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 726 21 0 0 0 chr6 18544244 18544265 -130972772 + AT_rich Low_complexity Low_complexity 1 21 0 7 726 29 28 0 0 chr6 18544346 18544382 -130972655 + AT_rich Low_complexity Low_complexity 1 36 0 7 726 583 270 81 106 chr6 18544618 18544854 -130972183 + MER46C DNA MER2_type 1 230 -108 7 726 552 335 86 6 chr6 18545592 18545754 -130971283 + B3A SINE B2 6 180 -18 7 726 38 22 0 0 chr6 18545813 18545858 -130971179 + AT_rich Low_complexity Low_complexity 1 45 0 7 726 375 78 0 0 chr6 18546746 18546797 -130970240 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 726 29 38 0 19 chr6 18547267 18547293 -130969744 + AT_rich Low_complexity Low_complexity 1 26 0 7 726 1267 20 0 0 chr6 18547293 18547440 -130969597 + B1_Mus2 SINE Alu 1 147 0 7 726 29 38 0 19 chr6 18547440 18547467 -130969570 + AT_rich Low_complexity Low_complexity 1 27 0 7 726 24 0 0 0 chr6 18547599 18547623 -130969414 + AT_rich Low_complexity Low_complexity 1 24 0 7 726 22 35 0 0 chr6 18547785 18547814 -130969223 + AT_rich Low_complexity Low_complexity 1 29 0 8 726 420 291 13 51 chr6 18549421 18549577 -130967460 + RSINE1 SINE B4 2 151 -14 8 726 368 296 127 66 chr6 18549973 18550154 -130966883 + B3 SINE B2 11 202 -14 8 726 1973 185 57 14 chr6 18550204 18550627 -130966410 + BGLII_B LTR ERVK 1 441 0 8 726 184 0 30 61 chr6 18550650 18550683 -130966354 + (TTATA)n Simple_repeat Simple_repeat 5 36 0 8 726 202 158 26 0 chr6 18551582 18551620 -130965417 + GA-rich Low_complexity Low_complexity 2 40 0 8 726 186 324 67 29 chr6 18552490 18552595 -130964442 - L2 LINE L2 -1876 1543 1435 8 726 292 275 50 42 chr6 18553827 18553984 -130963053 + MTE2b LTR MaLR 264 412 -7 8 726 36 53 0 0 chr6 18554310 18554367 -130962670 + AT_rich Low_complexity Low_complexity 1 57 0 8 726 2028 277 85 0 chr6 18554432 18555067 -130961970 + Lx6 LINE L1 6746 7434 -26 8 726 501 291 31 93 chr6 18556385 18556584 -130960453 - B3A SINE B2 0 216 30 9 726 1314 215 97 34 chr6 18556584 18556936 -130960101 + ORR1D1 LTR MaLR 1 374 0 9 726 1439 173 12 12 chr6 18557076 18557327 -130959710 + ORR1D1-int LTR MaLR 50 300 -1070 9 726 2136 267 73 34 chr6 18557352 18558368 -130958669 - L1_Mur3 LINE L1 -2419 3461 2407 9 726 506 283 142 18 chr6 18558593 18559029 -130958008 - L1_Rod LINE L1 -4023 1824 1335 9 726 202 102 0 39 chr6 18559046 18559088 -130957949 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 9 726 1014 105 35 0 chr6 18559088 18559231 -130957806 - B1_Mus1 SINE Alu 0 148 1 9 726 202 102 0 39 chr6 18559231 18559239 -130957798 + (TTTTTG)n Simple_repeat Simple_repeat 5 12 0 9 726 710 227 43 48 chr6 18559848 18560056 -130956981 - Lx9 LINE L1 -252 7392 7186 9 726 276 184 262 0 chr6 18560054 18560157 -130956880 + Lx9 LINE L1 7428 7557 -87 9 726 370 274 158 0 chr6 18563269 18563364 -130953673 + B1_Mur1 SINE Alu 2 111 -38 9 726 213 65 0 0 chr6 18563371 18563402 -130953635 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 9 726 3160 101 0 0 chr6 18563733 18564190 -130952847 - L1_Mm LINE L1 -58 5825 5369 1 726 1040 156 0 0 chr6 18564288 18564467 -130952570 + L1_Mm LINE L1 4686 4864 -1019 1 726 25 51 0 0 chr6 18565216 18565255 -130951782 + AT_rich Low_complexity Low_complexity 1 39 0 1 726 245 268 132 13 chr6 18566240 18566391 -130950646 - RLTR21 LTR ERVK -318 1254 1086 1 726 231 415 0 6 chr6 18566450 18566610 -130950427 + (CA)n Simple_repeat Simple_repeat 1 159 0 1 726 292 294 0 35 chr6 18566491 18566604 -130950433 + (CATATA)n Simple_repeat Simple_repeat 1 109 0 1 726 375 23 0 0 chr6 18566643 18566687 -130950350 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 726 340 333 0 33 chr6 18566705 18566885 -130950152 + (CATATA)n Simple_repeat Simple_repeat 3 176 0 1 726 305 366 111 0 chr6 18567256 18567428 -130949609 + LTR33A_ LTR ERVL 1 191 -340 1 726 239 321 113 15 chr6 18567572 18567705 -130949332 + LTR33A_ LTR ERVL 371 516 -15 1 726 394 269 71 71 chr6 18569284 18569468 -130947569 + MER53 DNA hAT 10 193 0 1 726 368 250 77 43 chr6 18570285 18570402 -130946635 - RSINE1 SINE B4 -41 124 4 1 726 322 199 36 55 chr6 18570812 18571173 -130945864 + (CA)n Simple_repeat Simple_repeat 1 353 0 1 726 589 67 0 130 chr6 18571214 18571421 -130945616 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 726 250 174 0 61 chr6 18572898 18572947 -130944090 - B1F1 SINE Alu -102 47 2 1 726 332 366 63 0 chr6 18573130 18573272 -130943765 - MLT1C LTR MaLR -17 450 300 1 726 788 60 8 0 chr6 18573279 18573396 -130943641 + L1_Mm LINE L1 1418 1535 -4348 1 726 1204 94 6 0 chr6 18573397 18573577 -130943460 + L1_Mm LINE L1 2161 2341 -3542 1 726 22206 102 11 2 chr6 18573851 18577297 -130939740 + L1_Mm LINE L1 2321 5797 -86 1 726 5104 55 17 11 chr6 18577297 18577956 -130939081 + L1Md_F2 LINE L1 5906 6568 -14 1 726 578 39 13 0 chr6 18578308 18578385 -130938652 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 1 726 210 128 0 0 chr6 18579348 18579387 -130937650 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 726 395 306 112 31 chr6 18579955 18580242 -130936795 - L1MEg LINE L1 -4573 1511 1202 1 726 1538 243 22 47 chr6 18580418 18580939 -130936098 + Lx8 LINE L1 5374 5915 -1558 1 726 504 195 11 0 chr6 18581753 18581840 -130935197 - PB1D10 SINE Alu -7 110 23 1 726 215 357 35 35 chr6 18581783 18581870 -130935167 - B4A SINE B4 -125 167 81 1 726 475 269 31 0 chr6 18582664 18582794 -130934243 - MER5B DNA MER1_type -42 136 3 1 726 313 234 40 69 chr6 18582806 18582907 -130934130 + MER5A DNA MER1_type 4 101 -88 1 726 1153 82 0 0 chr6 18582983 18583130 -130933907 - B1_Mus2 SINE Alu 0 147 1 1 726 306 348 19 40 chr6 18585189 18585345 -130931692 + L2a LINE L2 3221 3420 -6 1 726 2973 184 49 27 chr6 18585544 18586338 -130930699 - RLTR13D3 LTR ERVK 0 1114 1 1 726 363 284 87 50 chr6 18586422 18586641 -130930396 + Lx8 LINE L1 7246 7472 -1 1 726 515 317 63 34 chr6 18586819 18587025 -130930012 + MLT1A1 LTR MaLR 1 212 -196 1 726 239 261 53 32 chr6 18587048 18587143 -130929894 + MLT1A1 LTR MaLR 312 408 0 1 726 305 292 188 12 chr6 18587302 18587472 -130929565 + L1ME3 LINE L1 5570 5769 -404 1 726 327 326 41 67 chr6 18587538 18587732 -130929305 + L1ME3 LINE L1 5903 6091 -71 1 726 372 311 50 57 chr6 18588114 18588254 -130928783 - ID_B1 SINE B4 -1 223 85 1 726 4125 61 40 11 chr6 18588472 18589016 -130928021 + LTRIS2 LTR ERV1 5 564 0 1 726 246 91 0 0 chr6 18589028 18589061 -130927976 - L1_Mm LINE L1 -273 5610 5578 1 726 5384 32 0 0 chr6 18589061 18589716 -130927321 + L1Md_T LINE L1 5953 6582 0 1 726 261 208 0 0 chr6 18590627 18590699 -130926338 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 726 306 50 0 0 chr6 18590844 18590884 -130926153 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 726 567 280 121 82 chr6 18590887 18591300 -130925737 - Lx9 LINE L1 -208 7436 7008 1 726 215 61 30 0 chr6 18591366 18591399 -130925638 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 726 186 250 0 0 chr6 18591440 18591496 -130925541 + CT-rich Low_complexity Low_complexity 6 61 0 1 726 689 241 69 44 chr6 18591571 18591775 -130925262 - B3 SINE B2 -6 210 2 1 726 214 329 0 0 chr6 18591845 18591927 -130925110 + GA-rich Low_complexity Low_complexity 1 82 0 1 726 5234 211 48 25 chr6 18592123 18593705 -130923332 + Lx7 LINE L1 4544 6187 -1509 1 726 739 0 22 0 chr6 18593705 18593796 -130923241 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 1 726 3210 220 71 34 chr6 18593796 18594134 -130922903 + Lx7 LINE L1 6188 6536 -1160 1 726 304 259 12 2 chr6 18594138 18594222 -130922815 + MT2A LTR ERVL 6 88 -445 1 726 222 211 0 0 chr6 18594223 18594280 -130922757 + T-rich Low_complexity Low_complexity 4 60 0 1 726 787 204 150 5 chr6 18594340 18594527 -130922510 + MT2A LTR ERVL 87 300 -233 1 726 4530 205 51 12 chr6 18594542 18595600 -130921437 + Lx7 LINE L1 6581 7679 -17 1 726 540 319 89 63 chr6 18595623 18596604 -130920433 + L1M2 LINE L1 3006 4011 -2132 1 726 256 313 45 108 chr6 18596605 18596716 -130920321 + RSINE1 SINE B4 1 104 -61 1 726 394 259 22 40 chr6 18596766 18596946 -130920091 + L1M2 LINE L1 3985 4149 -1994 1 726 545 311 22 0 chr6 18597052 18597187 -130919850 - ID_B1 SINE B4 -2 222 85 1 726 440 293 78 7 chr6 18597301 18597442 -130919595 - MLT1A1 LTR MaLR -42 366 216 1 726 4032 57 2 2 chr6 18597511 18598019 -130919018 + L1Md_F2 LINE L1 6075 6582 0 1 726 519 80 90 0 chr6 18598020 18598120 -130918917 - Lx3_Mus LINE L1 -8 7001 6893 1 726 243 0 0 0 chr6 18598718 18598745 -130918292 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 726 435 83 0 0 chr6 18598814 18598874 -130918163 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 726 23 0 0 0 chr6 18598920 18598943 -130918094 + AT_rich Low_complexity Low_complexity 1 23 0 1 726 1274 174 32 0 chr6 18600607 18600826 -130916211 + URR1A DNA MER1_type 1 226 0 1 726 384 305 59 78 chr6 18600826 18600867 -130916170 - CYRA11_Mm Unknown Y-chromosome -450 167 132 1 726 311 360 83 79 chr6 18600853 18601094 -130915943 - MLT1A1 LTR MaLR -132 242 1 1 726 1064 149 119 5 chr6 18602877 18603079 -130913958 - URR1A DNA MER1_type -1 225 1 1 726 661 270 0 28 chr6 18603391 18603532 -130913505 - RSINE1 SINE B4 -25 140 4 1 726 266 285 92 79 chr6 18603855 18604019 -130913018 - MIR SINE MIR -27 235 70 1 726 326 331 105 46 chr6 18604191 18604495 -130912542 + Tigger15a DNA TcMar 9 330 -385 1 726 1335 0 23 11 chr6 18605952 18606129 -130910908 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 726 496 328 49 88 chr6 18607053 18607275 -130909762 - MLT1A LTR MaLR -1 373 167 1 726 2294 164 53 22 chr6 18607275 18607692 -130909345 + RLTR23 LTR ERV1 1 430 0 1 726 496 328 49 88 chr6 18607692 18607857 -130909180 - MLT1A LTR MaLR -208 166 2 1 726 301 353 49 0 chr6 18608397 18608499 -130908538 - PB1D10 SINE Alu -1 116 10 1 726 357 264 51 94 chr6 18609746 18609884 -130907153 - RSINE1 SINE B4 -30 135 4 1 726 333 343 70 77 chr6 18609960 18610219 -130906818 - MIRb SINE MIR -9 259 3 1 726 7452 208 49 30 chr6 18610370 18611838 -130905199 + Lx6 LINE L1 5356 6874 -586 1 726 468 0 0 0 chr6 18611838 18611890 -130905147 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 726 396 0 0 0 chr6 18611890 18611933 -130905104 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 726 585 52 0 0 chr6 18611933 18612009 -130905028 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 90 7452 220 68 24 chr6 18612009 18612577 -130904460 + Lx6 LINE L1 6875 7456 -4 1 727 853 236 93 47 chr6 18612850 18613108 -130903929 - MTD LTR MaLR 0 419 150 1 727 263 260 75 75 chr6 18613651 18613838 -130903199 - RLTR15 LTR ERVK -153 206 20 1 727 695 226 62 0 chr6 18615726 18615872 -130901165 + RSINE1 SINE B4 8 162 -3 1 727 336 102 0 0 chr6 18615872 18615921 -130901116 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 727 43 20 0 0 chr6 18615952 18616002 -130901035 + AT_rich Low_complexity Low_complexity 1 50 0 1 727 187 301 0 52 chr6 18617561 18617638 -130899399 + L3 LINE CR1 2775 2847 -1642 1 727 376 350 94 31 chr6 18618149 18618435 -130898602 - MARNA DNA Mariner -138 448 145 1 727 198 103 0 0 chr6 18620014 18620043 -130896994 + (T)n Simple_repeat Simple_repeat 1 29 0 1 727 672 232 58 0 chr6 18620624 18620762 -130896275 - B1_Mur1 SINE Alu -2 147 2 1 727 4074 49 0 0 chr6 18621203 18621746 -130895291 - L1Md_F2 LINE L1 -664 5918 5376 1 727 5110 62 0 16 chr6 18621746 18622423 -130894614 + L1Md_F2 LINE L1 5917 6582 0 1 727 955 268 0 0 chr6 18622535 18622748 -130894289 + B3 SINE B2 1 213 -3 1 727 224 224 0 20 chr6 18624883 18624933 -130892104 + MIRc SINE MIR 184 232 -36 1 727 342 67 0 0 chr6 18625379 18625424 -130891613 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 727 254 323 78 56 chr6 18625523 18625792 -130891245 + B4A SINE B4 2 276 -16 1 727 653 162 7 0 chr6 18625830 18625984 -130891053 + CT-rich Low_complexity Low_complexity 1 155 0 1 727 208 254 48 0 chr6 18625984 18626047 -130890990 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 727 260 250 24 0 chr6 18626198 18626282 -130890755 + MIR SINE MIR 136 221 -41 1 727 330 286 94 31 chr6 18626426 18626617 -130890420 + MamRep434 DNA TcMar 5 207 -219 1 727 25 0 0 0 chr6 18626694 18626719 -130890318 + AT_rich Low_complexity Low_complexity 1 25 0 1 727 486 274 15 53 chr6 18626755 18626886 -130890151 - RSINE1 SINE B4 -38 127 2 1 727 193 342 115 16 chr6 18628742 18628864 -130888173 + MIRb SINE MIR 19 152 -116 1 727 369 330 0 17 chr6 18629340 18629457 -130887580 - PB1D10 SINE Alu 0 117 3 1 727 243 299 85 75 chr6 18630113 18630207 -130886830 - PB1D7 SINE Alu -25 95 1 1 727 623 294 50 65 chr6 18630236 18630436 -130886601 + B3A SINE B2 2 198 0 1 727 278 366 23 15 chr6 18631231 18631364 -130885673 - MIR SINE MIR -50 212 79 1 727 1170 75 0 0 chr6 18631692 18631838 -130885199 + B1_Mus2 SINE Alu 1 146 -1 1 727 410 45 0 57 chr6 18631839 18631909 -130885128 + (A)n Simple_repeat Simple_repeat 1 66 0 1 727 244 0 56 0 chr6 18632319 18632355 -130884682 + (TGG)n Simple_repeat Simple_repeat 2 39 0 1 727 190 286 104 52 chr6 18632664 18632760 -130884277 - MER5B DNA MER1_type 0 178 78 1 727 225 228 20 89 chr6 18633125 18633226 -130883811 + MT2A LTR ERVL 155 248 -285 1 727 315 295 0 82 chr6 18633560 18633645 -130883392 + RSINE1 SINE B4 53 130 -35 2 727 475 146 33 11 chr6 18633634 18633724 -130883313 + B1_Mur4 SINE Alu 59 150 0 2 727 237 65 0 0 chr6 18634571 18634602 -130882435 + (CCCCCT)n Simple_repeat Simple_repeat 2 32 0 2 727 330 26 0 0 chr6 18634633 18634672 -130882365 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 727 396 0 0 0 chr6 18634672 18634715 -130882322 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 727 875 250 158 37 chr6 18635615 18635943 -130881094 + MTE2a LTR MaLR 12 379 0 2 727 396 0 0 0 chr6 18636274 18636318 -130880719 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 2 727 330 45 0 0 chr6 18637016 18637060 -130879977 + (A)n Simple_repeat Simple_repeat 1 44 0 2 727 323 176 11 0 chr6 18637491 18637582 -130879455 + CT-rich Low_complexity Low_complexity 1 92 0 2 727 337 207 15 14 chr6 18637585 18637673 -130879364 - B1F SINE Alu -9 140 36 2 727 203 0 37 0 chr6 18640267 18640294 -130876743 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 727 3049 65 62 45 chr6 18640761 18641210 -130875827 - L1_Mus2 LINE L1 -7 6559 6103 2 727 283 298 86 26 chr6 18641285 18641554 -130875483 - Charlie2b DNA MER1_type -39 2743 2459 2 727 361 297 25 17 chr6 18641604 18641724 -130875313 + B1F SINE Alu 3 123 -26 2 727 319 331 43 36 chr6 18641724 18641741 -130875296 + ID_B1 SINE B4 84 221 -3 2 727 1309 259 93 18 chr6 18641803 18642243 -130874794 - Lx9 LINE L1 0 7644 7172 2 727 24 0 0 0 chr6 18642351 18642375 -130874662 + AT_rich Low_complexity Low_complexity 1 24 0 2 727 276 53 0 0 chr6 18642429 18642467 -130874570 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 727 540 254 111 0 chr6 18642472 18642598 -130874439 - RSINE1 SINE B4 -22 143 4 2 727 25 0 0 0 chr6 18642612 18642637 -130874400 + AT_rich Low_complexity Low_complexity 1 25 0 2 727 207 400 92 29 chr6 18642846 18643052 -130873985 - L2 LINE L2 -704 2715 2497 2 727 270 352 44 0 chr6 18644936 18645027 -130872010 - PB1D10 SINE Alu -12 105 11 2 727 220 316 0 0 chr6 18645568 18645625 -130871412 + (CCTG)n Simple_repeat Simple_repeat 1 57 0 2 727 453 36 0 0 chr6 18646728 18646783 -130870254 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 727 341 357 7 7 chr6 18646813 18646954 -130870083 + B1F1 SINE Alu 1 141 -8 2 727 305 355 86 19 chr6 18647449 18647716 -130869321 + L2a LINE L2 1188 1472 -1947 2 727 202 349 121 20 chr6 18647841 18648040 -130868997 + L2a LINE L2 1736 1954 -1465 2 727 410 324 161 21 chr6 18648234 18648612 -130868425 + L2a LINE L2 2968 3398 -28 2 727 23 33 0 0 chr6 18648665 18648695 -130868342 + AT_rich Low_complexity Low_complexity 1 30 0 2 727 208 55 71 18 chr6 18648716 18648772 -130868265 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 727 234 321 148 26 chr6 18650527 18650642 -130866395 + MIR SINE MIR 14 142 -120 2 727 3695 97 0 2 chr6 18650984 18651492 -130865545 - L1_Mus1 LINE L1 -3 6564 6058 2 727 16632 94 4 2 chr6 18651492 18653828 -130863209 - L1_Mm LINE L1 -99 5784 3444 2 727 283 270 29 48 chr6 18653855 18653960 -130863077 + PB1D10 SINE Alu 12 114 -3 2 727 522 83 0 0 chr6 18654922 18654994 -130862043 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 727 369 0 0 0 chr6 18655283 18655324 -130861713 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 727 186 43 0 0 chr6 18655324 18655346 -130861691 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 727 559 75 11 11 chr6 18655728 18655823 -130861214 + (TC)n Simple_repeat Simple_repeat 2 96 0 2 727 211 329 38 12 chr6 18655989 18656069 -130860968 - MER5A DNA MER1_type -95 94 13 2 727 320 297 52 52 chr6 18656845 18656941 -130860096 + B3A SINE B2 72 167 -31 2 727 258 81 0 0 chr6 18656954 18656991 -130860046 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 727 386 53 18 0 chr6 18657608 18657665 -130859372 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 727 25 31 0 0 chr6 18657946 18657978 -130859059 + AT_rich Low_complexity Low_complexity 1 32 0 2 727 480 35 0 0 chr6 18658126 18658184 -130858853 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 727 11252 72 1 2 chr6 18658206 18660358 -130856679 - L1Md_F2 LINE L1 -10 6572 4422 2 727 29 0 0 0 chr6 18660389 18660418 -130856619 + AT_rich Low_complexity Low_complexity 1 29 0 2 727 267 179 0 0 chr6 18660439 18660506 -130856531 + CT-rich Low_complexity Low_complexity 2 68 0 2 727 330 289 50 58 chr6 18660521 18660642 -130856395 - RSINE1 SINE B4 -1 164 45 2 727 704 304 144 16 chr6 18662928 18663185 -130853852 - MTE2b LTR MaLR -88 291 2 2 727 254 357 62 31 chr6 18663190 18663320 -130853717 - ORR1E LTR MaLR -225 134 1 2 727 198 0 0 0 chr6 18663350 18663372 -130853665 + (T)n Simple_repeat Simple_repeat 1 22 0 2 727 1019 78 24 6 chr6 18663439 18663606 -130853431 - MusHAL1 LINE L1 -626 2086 1917 2 727 203 0 0 36 chr6 18664627 18664655 -130852382 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 727 233 316 56 47 chr6 18664760 18664924 -130852113 + MIRc SINE MIR 38 209 -59 2 727 210 118 0 0 chr6 18665492 18665526 -130851511 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 2 727 830 194 70 5 chr6 18665584 18665771 -130851266 + RMER12 LTR ERVK 1124 1322 0 2 727 407 338 129 5 chr6 18665844 18666046 -130850991 + MLT1F2 LTR MaLR 319 545 -15 2 727 216 0 0 0 chr6 18666152 18666176 -130850861 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 2 727 8168 50 0 3 chr6 18666180 18667199 -130849838 - L1Md_F2 LINE L1 -12 6570 5550 2 727 651 60 0 0 chr6 18667353 18667437 -130849600 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 2 727 847 280 88 52 chr6 18668695 18669193 -130847844 + L1M2 LINE L1 5255 5770 -521 2 727 459 0 0 0 chr6 18669194 18669245 -130847792 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 727 245 29 0 29 chr6 18670610 18670645 -130846392 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 727 980 50 7 66 chr6 18670645 18670788 -130846249 - B1_Mm SINE Alu -11 136 3 2 727 204 56 56 0 chr6 18672060 18672096 -130844941 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 2 727 226 254 95 34 chr6 18672099 18672246 -130844791 + Lx9 LINE L1 7465 7620 -24 2 727 672 93 0 0 chr6 18672438 18672535 -130844502 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 2 727 481 263 0 10 chr6 18672538 18672638 -130844399 - PB1D10 SINE Alu -9 108 10 2 727 3439 128 18 13 chr6 18672687 18673239 -130843798 - Lx2B LINE L1 -5 6995 6441 2 727 7776 83 7 7 chr6 18673256 18674373 -130842664 + L1_Mus3 LINE L1 5522 6638 0 2 727 719 333 32 16 chr6 18674619 18674872 -130842165 - MER2 DNA MER2_type -1 344 88 2 727 216 234 0 58 chr6 18675031 18675117 -130841920 + T-rich Low_complexity Low_complexity 5 85 0 2 727 234 326 115 29 chr6 18675992 18676131 -130840906 + B4 SINE B4 125 275 -17 2 727 372 326 89 57 chr6 18676565 18676880 -130840157 + L1MC4 LINE L1 7511 7835 -207 2 727 586 289 82 24 chr6 18676880 18677291 -130839746 + Lx6 LINE L1 736 1018 -6710 2 727 917 47 0 0 chr6 18677291 18677398 -130839639 + U6 snRNA snRNA 1 107 0 2 727 29800 70 2 0 chr6 18677399 18681333 -130835704 + L1Md_F2 LINE L1 1644 5585 -298 2 727 7934 55 3 3 chr6 18681335 18682328 -130834709 + L1Md_F2 LINE L1 5588 6580 -2 2 727 651 203 154 33 chr6 18682329 18682577 -130834460 + Lx6 LINE L1 950 1217 -6511 2 727 468 0 0 0 chr6 18682577 18682629 -130834408 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 727 16695 169 53 23 chr6 18682629 18683493 -130833544 + Lx6 LINE L1 1186 2102 -3778 2 727 407 92 0 15 chr6 18683493 18683559 -130833478 + (CAA)n Simple_repeat Simple_repeat 2 66 0 2 727 16695 167 52 22 chr6 18683559 18686309 -130830728 + Lx6 LINE L1 2103 4915 -965 2 727 1047 109 0 0 chr6 18686315 18686462 -130830575 + B1_Mus2 SINE Alu 1 147 0 2 727 33732 65 4 5 chr6 18686492 18691713 -130825324 + L1Md_F2 LINE L1 367 5585 -298 2 727 7841 59 1 1 chr6 18691715 18692706 -130824331 + L1Md_F2 LINE L1 5588 6578 -4 2 727 3737 183 54 120 chr6 18692720 18692918 -130824119 + Lx6 LINE L1 4904 5099 -781 2 727 1000 124 14 0 chr6 18692918 18693063 -130823974 - B1_Mus2 SINE Alu 0 147 1 2 727 7396 214 46 78 chr6 18693063 18695517 -130821520 + Lx6 LINE L1 5100 7459 -1 2 727 400 164 30 18 chr6 18695517 18695686 -130821351 + GA-rich Low_complexity Low_complexity 1 171 0 2 727 432 339 143 24 chr6 18696825 18697076 -130819961 + B4A SINE B4 6 286 -6 2 727 477 0 0 0 chr6 18697076 18697129 -130819908 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 727 369 0 0 0 chr6 18697188 18697229 -130819808 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 727 537 68 0 0 chr6 18698166 18698240 -130818797 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 727 22 94 0 0 chr6 18698562 18698626 -130818411 + AT_rich Low_complexity Low_complexity 1 64 0 2 727 218 259 0 17 chr6 18699109 18699168 -130817869 + GA-rich Low_complexity Low_complexity 1 58 0 2 727 274 181 24 24 chr6 18699678 18699763 -130817274 + (CATATA)n Simple_repeat Simple_repeat 5 89 0 2 727 856 217 49 12 chr6 18699765 18700008 -130817029 - Lx9 LINE L1 -130 7514 7263 2 727 328 167 0 0 chr6 18700021 18700087 -130816950 + Lx9 LINE L1 7577 7642 -2 2 727 831 313 51 42 chr6 18700597 18701007 -130816030 + BGLII_B LTR ERVK 1 414 -27 2 727 2100 184 66 76 chr6 18701104 18701694 -130815343 + RLTR31A_Mm LTR ERVK 1 584 0 2 727 21 71 0 0 chr6 18701706 18701748 -130815289 + AT_rich Low_complexity Low_complexity 1 42 0 2 727 1060 178 64 16 chr6 18701778 18702132 -130814905 - RMER17C LTR ERVK 0 410 4 2 727 1118 250 41 33 chr6 18702278 18702601 -130814436 - Lx5 LINE L1 -4 7054 6746 2 727 397 268 94 0 chr6 18704205 18704332 -130812705 - Lx8 LINE L1 -489 6984 6846 2 727 372 43 0 0 chr6 18704586 18704632 -130812405 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 727 528 287 62 26 chr6 18704720 18704913 -130812124 + L3 LINE CR1 2089 2288 -2201 2 727 346 65 16 16 chr6 18705042 18705105 -130811932 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 2 727 787 63 16 0 chr6 18705153 18705280 -130811757 + L1Md_F2 LINE L1 6454 6582 0 2 727 351 0 0 0 chr6 18705315 18705354 -130811683 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 727 223 392 76 6 chr6 18706012 18706184 -130810853 - L3 LINE CR1 -982 3507 3324 3 727 360 0 0 0 chr6 18706812 18706852 -130810185 + (TAA)n Simple_repeat Simple_repeat 3 42 0 3 727 550 299 0 0 chr6 18706991 18707118 -130809919 - ID_B1 SINE B4 -12 212 86 3 727 440 178 7 151 chr6 18707283 18707422 -130809615 + MT2B LTR ERVL 139 257 -344 3 727 870 124 0 35 chr6 18707328 18707470 -130809567 + B1_Mur4 SINE Alu 12 148 -2 3 727 2937 14 5 92 chr6 18707494 18707896 -130809141 + IAPLTR1_Mm LTR ERVK 1 367 0 3 727 1020 89 155 0 chr6 18707896 18708059 -130808978 + IAPEz-int LTR ERVK 3 191 -6290 3 727 7037 77 121 38 chr6 18708030 18709232 -130807805 + IAPEz-int LTR ERVK 67 1313 -5168 3 727 17146 19 30 0 chr6 18709231 18712408 -130804629 + IAPEz-int LTR ERVK 3210 6481 0 3 727 2925 14 5 92 chr6 18712408 18712809 -130804228 + IAPLTR1_Mm LTR ERVK 1 366 -1 3 727 234 0 0 0 chr6 18712809 18712835 -130804202 + (TAAG)n Simple_repeat Simple_repeat 2 27 0 3 727 1112 119 6 0 chr6 18713277 18713454 -130803583 + (TTC)n Simple_repeat Simple_repeat 1 178 0 3 727 218 250 0 19 chr6 18713454 18713500 -130803537 + polypyrimidine Low_complexity Low_complexity 4 48 0 3 727 654 212 0 0 chr6 18713526 18713639 -130803398 - B1_Mur3 SINE Alu -32 117 5 3 727 330 345 75 14 chr6 18713538 18713685 -130803352 - B4 SINE B4 -98 194 39 3 727 246 261 29 0 chr6 18713785 18713854 -130803183 + MLT1J LTR MaLR 432 502 -10 3 727 255 61 0 0 chr6 18717472 18717505 -130799532 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 727 518 0 16 0 chr6 18717506 18717568 -130799469 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 727 276 237 0 26 chr6 18719170 18719248 -130797789 + GA-rich Low_complexity Low_complexity 3 78 0 3 727 4195 60 6 4 chr6 18719692 18720229 -130796808 + L1_Mus3 LINE L1 6094 6631 -7 3 727 373 241 90 15 chr6 18720560 18720730 -130796307 - L1MA8 LINE L1 -243 5925 5739 3 727 4410 109 33 3 chr6 18721618 18722281 -130794756 + Lx2B LINE L1 6313 6995 -5 3 727 185 321 97 22 chr6 18722580 18722714 -130794323 + L2 LINE L2 2530 2673 -746 3 727 6353 65 12 0 chr6 18722719 18723517 -130793520 - RLTR13C2 LTR ERVK 0 808 1 3 727 1494 129 17 0 chr6 18723529 18723769 -130793268 - ETnERV2-int LTR ERVK -28 5780 5537 3 727 5107 147 30 24 chr6 18723771 18724755 -130792282 - ETnERV2-int LTR ERVK -413 5395 4406 3 727 7402 39 4 0 chr6 18724755 18725713 -130791324 - L1_Mm LINE L1 -1281 4602 3641 3 727 6732 97 25 62 chr6 18725713 18727598 -130789439 - ETnERV2-int LTR ERVK -2648 4596 2339 3 727 473 314 108 41 chr6 18728088 18728450 -130788587 - Tigger11a DNA MER2_type 0 735 350 3 727 447 194 0 1 chr6 18728454 18728548 -130788489 + L1M2 LINE L1 5671 5763 -537 3 727 660 225 50 7 chr6 18728659 18728798 -130788239 - RMER20B LTR ERVK -482 145 1 3 727 396 0 0 0 chr6 18729109 18729153 -130787884 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 727 343 269 93 71 chr6 18729265 18729405 -130787632 - MTD LTR MaLR -260 159 17 3 727 5494 81 16 18 chr6 18729448 18730663 -130786374 + L1VL1 LINE L1 149 1347 -2351 3 727 33670 48 2 5 chr6 18730666 18736097 -130780940 + L1Md_T LINE L1 77 5590 -296 3 727 8289 37 0 3 chr6 18736099 18737095 -130779942 + L1Md_T LINE L1 5593 6585 0 3 727 28295 96 9 2 chr6 18737097 18742076 -130774961 + L1_Mus1 LINE L1 1555 6567 0 3 727 221 137 0 38 chr6 18742243 18742296 -130774741 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 727 581 279 82 50 chr6 18742387 18742812 -130774225 + L1M2 LINE L1 4847 5281 -862 3 90 305 264 77 29 chr6 18743228 18743436 -130773601 + L1M2 LINE L1 5348 5573 -727 3 728 416 293 27 60 chr6 18743513 18743662 -130773375 - MLT1B LTR MaLR -246 144 1 3 728 485 373 43 60 chr6 18743672 18744023 -130773014 + ORR1E LTR MaLR 15 359 0 3 728 1445 317 57 39 chr6 18744027 18745134 -130771903 + ORR1E-int LTR MaLR 3 1185 -395 3 728 433 302 54 54 chr6 18745122 18745269 -130771768 - MTEa LTR MaLR -230 149 3 3 728 225 268 54 0 chr6 18745391 18745447 -130771590 - RSINE1 SINE B4 -103 62 4 3 728 690 278 15 110 chr6 18745470 18745733 -130771304 + MTEa LTR MaLR 138 375 -4 3 728 309 331 25 19 chr6 18746783 18746943 -130770094 + RSINE1 SINE B4 3 163 -2 3 728 1859 60 0 0 chr6 18746968 18747203 -130769834 + L1Md_F2 LINE L1 6336 6570 -12 3 728 377 297 88 44 chr6 18747586 18747836 -130769201 + LTR37A LTR ERV1 113 373 -53 3 728 271 369 58 119 chr6 18747952 18748195 -130768842 + MLT1F2 LTR MaLR 62 289 -271 3 728 481 367 11 11 chr6 18748930 18749109 -130767928 + B4A SINE B4 100 278 -14 3 728 198 143 0 0 chr6 18749171 18749206 -130767831 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 728 794 295 94 29 chr6 18749214 18750052 -130766985 + L1MA8 LINE L1 5158 6047 -244 3 728 26 0 0 0 chr6 18750086 18750112 -130766925 + AT_rich Low_complexity Low_complexity 1 26 0 3 728 245 178 55 0 chr6 18750118 18750191 -130766846 - L1MA5 LINE L1 -3 6297 6221 3 728 559 301 0 22 chr6 18750259 18750395 -130766642 - ID_B1 SINE B4 0 224 92 3 728 319 242 24 67 chr6 18750510 18750674 -130766363 + L1MA8 LINE L1 6117 6273 -18 3 728 193 380 28 0 chr6 18750708 18750779 -130766258 + MIRb SINE MIR 3 75 -193 3 728 396 0 0 0 chr6 18750789 18750833 -130766204 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 728 513 342 68 62 chr6 18750848 18751172 -130765865 + MTEa LTR MaLR 49 374 -5 3 728 1868 186 33 3 chr6 18751230 18751597 -130765440 + ORR1C1 LTR MaLR 1 378 0 3 728 333 341 11 0 chr6 18752180 18752271 -130764766 + RSINE1 SINE B4 22 113 -52 3 728 1359 43 0 0 chr6 18752273 18752480 -130764557 + (CA)n Simple_repeat Simple_repeat 1 207 0 3 728 462 36 0 0 chr6 18753371 18753427 -130763610 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 728 238 318 15 0 chr6 18754631 18754697 -130762340 - MER5A DNA MER1_type -122 67 1 3 728 465 19 0 0 chr6 18754972 18755026 -130762011 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 728 328 314 113 7 chr6 18756161 18756302 -130760735 - MLT1D LTR MaLR -349 156 1 3 728 251 309 0 23 chr6 18757238 18757324 -130759713 + Tigger9a DNA Tigger 39 122 -610 3 728 378 0 0 0 chr6 18757476 18757518 -130759519 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 728 526 306 8 8 chr6 18757520 18757642 -130759395 - RSINE1 SINE B4 -41 124 3 3 728 7097 95 20 45 chr6 18758371 18759493 -130757544 - Lx3_Mus LINE L1 -1 7008 5916 3 728 214 352 123 9 chr6 18759581 18759687 -130757350 + L4 LINE RTE 569 686 -1343 3 728 203 352 11 0 chr6 18759750 18759841 -130757196 + L4 LINE RTE 795 886 -1143 3 728 2926 169 19 58 chr6 18761276 18762183 -130754854 + L1VL4 LINE L1 512 1355 -2462 3 728 1771 211 17 54 chr6 18762183 18762197 -130754840 - MTC LTR MaLR -30 391 378 3 728 3805 72 35 0 chr6 18762197 18762711 -130754326 + L1_Mus3 LINE L1 6107 6638 0 3 728 1771 211 17 54 chr6 18762711 18763102 -130753935 - MTC LTR MaLR -44 377 2 3 728 5286 182 77 30 chr6 18763102 18764283 -130752754 - MTC-int LTR MaLR 0 1258 22 3 728 1423 173 123 3 chr6 18764299 18764583 -130752454 - MTC LTR MaLR 0 421 104 3 728 740 149 112 0 chr6 18764620 18764754 -130752283 + URR1A DNA MER1_type 78 226 0 3 728 678 148 0 47 chr6 18764754 18764869 -130752168 - MTC LTR MaLR -312 109 1 3 728 340 344 90 68 chr6 18764878 18765246 -130751791 - L2 LINE L2 -471 2948 2573 3 728 637 311 213 19 chr6 18766453 18767030 -130750007 - L2 LINE L2 -964 2455 1767 3 728 186 180 160 0 chr6 18767286 18767336 -130749701 - L2 LINE L2 -2142 1277 1220 3 728 617 267 13 7 chr6 18767718 18767869 -130749168 - B3A SINE B2 0 198 47 3 728 1183 222 119 38 chr6 18767979 18768297 -130748740 + ORR1D1 LTR MaLR 31 374 0 3 728 284 211 0 17 chr6 18768297 18768347 -130748690 - B2_Mm2 SINE B2 -145 50 2 3 728 1029 17 0 0 chr6 18768475 18768594 -130748443 + (TC)n Simple_repeat Simple_repeat 2 120 0 3 728 379 258 31 10 chr6 18768616 18768714 -130748323 - PB1D10 SINE Alu -17 100 1 3 728 424 321 73 0 chr6 18768941 18769078 -130747959 - MER20 DNA MER1_type -66 153 7 3 728 224 339 46 0 chr6 18769186 18769251 -130747786 - ID4_ SINE ID -9 74 7 3 728 23 33 0 0 chr6 18770203 18770233 -130746804 + AT_rich Low_complexity Low_complexity 1 30 0 3 728 345 289 28 19 chr6 18771379 18771485 -130745552 + RLTR23 LTR ERV1 324 430 0 3 728 1450 181 22 112 chr6 18771840 18772207 -130744830 - RLTR12B LTR ERVK -194 334 1 3 728 189 121 0 0 chr6 18772466 18772499 -130744538 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 728 2913 113 9 9 chr6 18772652 18773080 -130743957 - RLTR23 LTR ERV1 -2 428 1 3 728 511 270 101 14 chr6 18773194 18773333 -130743704 - MTD LTR MaLR -44 375 225 3 728 23 33 0 0 chr6 18773356 18773386 -130743651 + AT_rich Low_complexity Low_complexity 1 30 0 3 728 653 262 105 128 chr6 18773408 18773744 -130743293 - RMER12 LTR ERVK 0 1322 973 3 728 339 25 0 0 chr6 18773744 18773784 -130743253 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 728 653 195 132 174 chr6 18773784 18774003 -130743034 - RMER12 LTR ERVK -350 972 737 3 728 555 209 14 181 chr6 18774015 18774123 -130742914 - RMER12 LTR ERVK -997 811 733 3 728 1061 88 0 7 chr6 18774123 18774271 -130742766 + B1_Mus2 SINE Alu 1 147 0 3 728 584 185 24 67 chr6 18774271 18774449 -130742588 - RMER12 LTR ERVK -1076 732 566 3 728 1208 274 65 27 chr6 18775578 18776120 -130740917 - RMER12 LTR ERVK -1289 559 1 3 728 288 0 0 0 chr6 18776269 18776301 -130740736 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 728 965 265 40 26 chr6 18776301 18776593 -130740444 - Lx7 LINE L1 -386 7310 7014 3 728 514 293 40 7 chr6 18776601 18776752 -130740285 - MTD LTR MaLR -217 202 47 3 728 453 258 81 61 chr6 18776779 18776977 -130740060 + L1M2 LINE L1 3290 3491 -2652 3 728 1652 234 57 32 chr6 18777053 18777579 -130739458 + Lx9 LINE L1 7099 7637 -7 3 728 282 125 0 0 chr6 18777780 18777828 -130739209 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 728 374 259 27 0 chr6 18777828 18777940 -130739097 - L1M5 LINE L1 -1552 4594 4480 3 728 2073 182 39 13 chr6 18777940 18778324 -130738713 - ORR1B1 LTR MaLR 0 394 1 3 728 5534 206 82 18 chr6 18778324 18779742 -130737295 - ORR1B1-int LTR MaLR 0 1509 2 3 728 1849 156 111 9 chr6 18779747 18780097 -130736940 - ORR1B1 LTR MaLR -8 386 1 3 728 326 333 0 0 chr6 18780134 18780215 -130736822 + ID4_ SINE ID 3 83 0 3 728 186 171 0 0 chr6 18780301 18780342 -130736695 + (TTA)n Simple_repeat Simple_repeat 2 42 0 3 728 2560 130 35 8 chr6 18780687 18781089 -130735948 - MTC LTR MaLR -8 413 1 3 728 1068 144 28 6 chr6 18781332 18781513 -130735524 + B2_Mm2 SINE B2 1 185 -10 3 728 294 375 83 28 chr6 18782237 18782418 -130734619 + MER58A DNA MER1_type 2 192 -32 3 728 209 179 0 0 chr6 18782890 18782929 -130734108 + (TGG)n Simple_repeat Simple_repeat 1 39 0 3 728 2086 148 3 3 chr6 18784309 18784647 -130732390 + ORR1A1 LTR MaLR 1 338 -8 3 728 420 240 40 40 chr6 18785359 18785459 -130731578 - B1_Mur1 SINE Alu -1 148 49 3 728 1083 184 65 14 chr6 18786431 18786646 -130730391 - MTC LTR MaLR 0 421 196 4 728 15441 53 2 1 chr6 18786648 18789402 -130727635 - L1Md_F2 LINE L1 0 6582 3824 4 728 331 64 0 21 chr6 18789402 18789450 -130727587 - MTC LTR MaLR -372 49 3 4 728 298 331 151 6 chr6 18790421 18790600 -130726437 - MER58A DNA MER1_type -16 208 4 4 728 614 126 10 0 chr6 18790975 18791078 -130725959 + (GA)n Simple_repeat Simple_repeat 2 105 0 4 728 476 307 20 81 chr6 18791490 18791639 -130725398 + RSINE1 SINE B4 25 164 -1 4 728 393 75 0 0 chr6 18792460 18792513 -130724524 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 728 3777 25 138 4 chr6 18792847 18793362 -130723675 - RLTR6_Mm LTR ERV1 -70 584 1 4 728 23857 29 3 6 chr6 18793362 18796295 -130720742 - MMVL30-int LTR ERV1 0 3698 772 4 728 371 287 0 59 chr6 18796643 18796795 -130720242 - MMVL30-int LTR ERV1 -7023 533 391 4 728 6114 31 42 17 chr6 18796789 18797598 -130719439 - RLTR6-int LTR ERV1 -6949 829 1 4 728 3915 30 132 7 chr6 18797599 18798136 -130718901 - RLTR6_Mm LTR ERV1 -50 604 1 4 728 210 179 0 95 chr6 18798794 18798868 -130718169 + G-rich Low_complexity Low_complexity 5 71 0 4 728 351 229 206 73 chr6 18800186 18800351 -130716686 - B3A SINE B2 0 198 12 4 728 210 118 0 0 chr6 18801598 18801632 -130715405 + (T)n Simple_repeat Simple_repeat 1 34 0 4 728 247 273 18 0 chr6 18802011 18802066 -130714971 - ID4_ SINE ID -15 68 13 4 728 240 313 79 20 chr6 18802082 18802183 -130714854 - PB1 SINE Alu -7 120 14 4 728 245 347 163 0 chr6 18802609 18802707 -130714330 - B1F SINE Alu -35 114 1 4 728 189 107 0 0 chr6 18804057 18804085 -130712952 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 4 728 1142 88 0 0 chr6 18804416 18804563 -130712474 - B1_Mus1 SINE Alu -1 147 1 4 728 283 343 19 9 chr6 18804822 18804928 -130712109 - Cheshire DNA MER1_type -2141 279 173 4 728 4412 233 35 52 chr6 18805929 18806431 -130710606 - Lx6 LINE L1 -10 7450 6927 4 728 2422 62 75 0 chr6 18806431 18806753 -130710284 - ORR1A1 LTR MaLR 0 346 1 4 728 4412 233 35 52 chr6 18806753 18807271 -130709766 - Lx6 LINE L1 -534 6926 6453 4 728 411 21 0 0 chr6 18807271 18807319 -130709718 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 728 4412 233 35 52 chr6 18807319 18807533 -130709504 - Lx6 LINE L1 -1008 6452 6237 4 728 1080 94 0 0 chr6 18807551 18807689 -130709348 + B1_Mus2 SINE Alu 1 138 -9 4 728 234 0 0 0 chr6 18807689 18807715 -130709322 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 728 302 321 36 36 chr6 18807724 18807808 -130709229 + B1F SINE Alu 1 84 -65 4 728 30 59 0 0 chr6 18807969 18808020 -130709017 + AT_rich Low_complexity Low_complexity 1 51 0 4 728 3993 170 88 25 chr6 18808667 18809592 -130707445 - RLTR13C1 LTR ERVK 0 983 1 4 728 2462 86 172 7 chr6 18809723 18810131 -130706906 - IAPLTR2_Mm LTR ERVK 0 475 1 4 728 274 344 70 24 chr6 18810419 18810716 -130706321 + MER77 LTR ERVL 241 592 -15 4 728 2914 120 30 37 chr6 18810896 18811410 -130705627 - RLTR1C LTR ERV1 0 605 1 4 728 3257 92 100 34 chr6 18811485 18812014 -130705023 + LTRIS2 LTR ERV1 1 564 0 4 728 293 327 19 29 chr6 18812828 18812932 -130704105 - PB1D10 SINE Alu -14 103 1 4 728 7225 84 11 4 chr6 18812993 18814706 -130702331 + L1_Mus1 LINE L1 4836 6567 0 4 728 32 43 0 0 chr6 18814706 18814752 -130702285 + AT_rich Low_complexity Low_complexity 1 46 0 4 728 761 248 139 99 chr6 18814783 18815208 -130701829 + RMER4A LTR ERVK 16 457 -9 4 728 657 339 139 51 chr6 18815211 18816059 -130700978 - L2 LINE L2 -1606 1813 891 4 728 312 27 0 0 chr6 18817159 18817196 -130699841 + (T)n Simple_repeat Simple_repeat 1 37 0 4 728 1073 75 0 26 chr6 18817196 18817347 -130699690 - B1_Mus1 SINE Alu 0 148 2 4 728 230 241 86 0 chr6 18817348 18817406 -130699631 - B3 SINE B2 -53 163 101 4 728 675 0 0 0 chr6 18817664 18817739 -130699298 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 4 728 21 36 0 0 chr6 18819188 18819216 -130697821 + AT_rich Low_complexity Low_complexity 1 28 0 4 728 30 45 0 0 chr6 18819387 18819431 -130697606 + AT_rich Low_complexity Low_complexity 1 44 0 4 728 232 272 0 24 chr6 18820639 18820722 -130696315 + T-rich Low_complexity Low_complexity 4 84 0 4 728 273 136 0 43 chr6 18820730 18820799 -130696238 + CT-rich Low_complexity Low_complexity 2 67 0 4 728 264 305 51 31 chr6 18820799 18820897 -130696140 - ID_B1 SINE B4 -22 202 103 4 728 399 297 70 53 chr6 18820905 18821104 -130695933 + MLT1B LTR MaLR 35 249 -218 4 728 5169 58 1 5 chr6 18821104 18821757 -130695280 + L1Md_F2 LINE L1 5926 6576 -6 4 728 270 348 110 91 chr6 18821757 18821974 -130695063 + MLT1B LTR MaLR 250 458 -9 4 728 189 0 0 0 chr6 18822149 18822170 -130694867 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 4 728 11173 205 59 42 chr6 18822170 18825887 -130691150 - Lx6 LINE L1 -102 6948 3195 4 728 5513 48 6 0 chr6 18825891 18826951 -130690086 + L1Md_F3 LINE L1 5153 6217 -367 4 728 480 26 141 0 chr6 18826954 18827032 -130690005 + L1Md_F3 LINE L1 6482 6570 -14 4 728 2551 199 33 14 chr6 18827090 18827728 -130689309 - Lx6 LINE L1 -2675 3205 2556 4 728 1202 180 71 9 chr6 18827708 18828048 -130688989 - Lx6 LINE L1 -3528 2349 1991 4 728 1308 238 70 37 chr6 18828057 18828968 -130688069 - Lx6 LINE L1 -4050 1830 892 4 728 262 261 14 14 chr6 18830051 18830121 -130686916 - MTE2a LTR MaLR -10 369 300 4 728 12142 67 17 35 chr6 18831132 18832430 -130684607 + L1Md_A LINE L1 642 1964 -1950 4 728 1503 52 0 0 chr6 18832430 18832621 -130684416 + L1Md_T LINE L1 6392 6582 0 4 728 12142 113 37 3 chr6 18832621 18833998 -130683039 + L1Md_A LINE L1 1965 3345 -569 4 728 8394 34 0 0 chr6 18836234 18837230 -130679807 + L1Md_A LINE L1 5587 6582 0 4 728 254 297 93 85 chr6 18837718 18837847 -130679190 + MT2A LTR ERVL 3 132 -401 4 728 628 270 134 10 chr6 18837858 18837903 -130679134 + MT2B LTR ERVL 76 119 -414 4 728 1158 68 0 0 chr6 18837903 18838050 -130678987 - B1_Mus2 SINE Alu 0 147 1 4 728 702 264 39 78 chr6 18838050 18838280 -130678757 + MT2B LTR ERVL 285 505 -96 4 728 596 208 181 18 chr6 18838229 18838400 -130678637 + MTC LTR MaLR 223 421 0 4 728 329 272 81 87 chr6 18839590 18839701 -130677336 - B2_Mm2 SINE B2 -2 193 84 4 728 831 178 25 13 chr6 18839701 18839860 -130677177 - RLTR13D5 LTR ERVK 0 1023 863 4 728 182 62 31 0 chr6 18839860 18839892 -130677145 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4 728 7346 40 3 0 chr6 18839892 18840773 -130676264 - L1Md_F2 LINE L1 -23 6559 5676 4 728 6662 70 10 0 chr6 18840774 18841642 -130675395 - RLTR13D5 LTR ERVK -146 877 1 4 728 545 151 11 11 chr6 18841642 18841725 -130675312 - B2_Mm2 SINE B2 -111 84 2 4 728 262 182 74 49 chr6 18841760 18841841 -130675196 - MLT1D LTR MaLR -6 499 417 4 728 613 330 22 62 chr6 18841837 18842112 -130674925 + RMER15 LTR ERVL 296 559 -16 4 728 565 303 59 131 chr6 18842373 18842779 -130674258 - ORR1D1 LTR MaLR -1 377 1 4 728 23 78 0 0 chr6 18844227 18844278 -130672759 + AT_rich Low_complexity Low_complexity 1 51 0 4 728 250 408 0 0 chr6 18844722 18844820 -130672217 - Tigger5 DNA MER2_type -2190 216 119 4 728 27 29 0 0 chr6 18844955 18844989 -130672048 + AT_rich Low_complexity Low_complexity 1 34 0 4 728 542 187 289 0 chr6 18845012 18845178 -130671859 + B3 SINE B2 2 215 -1 4 728 307 292 88 44 chr6 18845296 18845432 -130671605 - B1F SINE Alu -6 143 2 4 728 27 62 0 0 chr6 18845795 18845843 -130671194 + AT_rich Low_complexity Low_complexity 1 48 0 4 728 268 310 100 65 chr6 18846099 18846378 -130670659 - B4A SINE B4 -2 290 2 4 728 3648 256 45 70 chr6 18846774 18848426 -130668611 - Lx5 LINE L1 -27 7433 5448 4 728 1851 177 16 31 chr6 18849197 18849581 -130667456 - ORR1C1 LTR MaLR 0 378 1 4 728 322 290 96 2 chr6 18849717 18849873 -130667164 + L1MD1 LINE L1 5669 5837 -342 4 728 35381 48 1 3 chr6 18849885 18855478 -130661559 + L1Md_T LINE L1 1 5588 -298 4 728 8393 36 0 0 chr6 18855479 18856475 -130660562 + L1Md_T LINE L1 5590 6585 0 4 728 557 280 86 20 chr6 18856488 18856732 -130660305 + L1MD1 LINE L1 5845 6104 -138 4 728 256 242 15 0 chr6 18856838 18856904 -130660133 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 728 401 288 11 91 chr6 18856967 18857154 -130659883 - B4A SINE B4 -120 172 1 4 728 1824 245 140 30 chr6 18858048 18858207 -130658830 + Lx8 LINE L1 5016 5192 -655 4 728 1436 215 125 0 chr6 18858207 18858542 -130658495 - RLTR30 LTR ERV1 0 379 3 4 728 2263 314 108 37 chr6 18858542 18860362 -130656675 + Lx8 LINE L1 5193 7195 -278 4 728 432 0 0 0 chr6 18860362 18860410 -130656627 + (TTA)n Simple_repeat Simple_repeat 1 48 0 4 728 2263 346 93 40 chr6 18860410 18860546 -130656491 + Lx8 LINE L1 7196 7328 -145 4 728 28 48 0 0 chr6 18860940 18860982 -130656055 + AT_rich Low_complexity Low_complexity 1 42 0 4 728 445 300 75 92 chr6 18864875 18865169 -130651868 - RLTR15 LTR ERVK -68 291 3 4 728 323 408 33 28 chr6 18865190 18865402 -130651635 - MER20 DNA MER1_type 0 219 7 4 728 529 342 20 7 chr6 18867441 18867594 -130649443 + RSINE1 SINE B4 3 157 -8 4 728 2988 67 15 3 chr6 18867627 18868019 -130649018 - L1_Mus1 LINE L1 0 6567 6171 4 728 1153 306 64 35 chr6 18868511 18869443 -130647594 - L1M2 LINE L1 -2193 3950 2992 4 728 369 287 162 23 chr6 18869507 18869764 -130647273 - L1MEg LINE L1 -4031 2169 1886 4 728 223 329 0 0 chr6 18871344 18871414 -130645623 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 4 728 877 257 14 19 chr6 18871424 18871634 -130645403 - B4A SINE B4 -78 214 6 4 728 630 0 0 0 chr6 18872613 18872683 -130644354 + (CAAAA)n Simple_repeat Simple_repeat 2 71 0 4 728 585 0 0 0 chr6 18873492 18873557 -130643480 + (CAAAC)n Simple_repeat Simple_repeat 2 66 0 4 729 1292 195 35 19 chr6 18874863 18875182 -130641855 - Lx7 LINE L1 -2 7694 7371 4 729 285 287 25 42 chr6 18875208 18875328 -130641709 - Lx7 LINE L1 -307 7389 7272 4 729 263 49 0 24 chr6 18875372 18875414 -130641623 + (TGG)n Simple_repeat Simple_repeat 1 41 0 4 729 1951 279 124 22 chr6 18875444 18876473 -130640564 + Lx6 LINE L1 6034 7397 -63 4 729 228 209 0 0 chr6 18876555 18876598 -130640439 - Lx7 LINE L1 -437 7259 7217 4 729 298 279 63 39 chr6 18876798 18876925 -130640112 - ID_B1 SINE B4 -1 223 94 4 729 1134 110 6 0 chr6 18877831 18877995 -130639042 + B2_Mm1t SINE B2 1 165 -28 4 729 684 60 0 0 chr6 18877997 18878080 -130638957 + L1Md_F2 LINE L1 5503 5585 -298 4 729 7532 61 23 4 chr6 18878081 18878980 -130638057 + L1Md_F2 LINE L1 5587 6481 -101 4 729 243 61 0 0 chr6 18878980 18879013 -130638024 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 4 729 7532 61 23 4 chr6 18879013 18879080 -130637957 + L1Md_F2 LINE L1 6482 6569 -13 4 729 710 306 85 0 chr6 18879681 18879939 -130637098 + B4A SINE B4 1 280 -12 4 729 21 0 0 0 chr6 18880089 18880110 -130636927 + AT_rich Low_complexity Low_complexity 1 21 0 5 729 460 80 0 39 chr6 18880577 18880655 -130636382 + L1Md_F2 LINE L1 6496 6570 -12 5 729 255 290 0 0 chr6 18881010 18881072 -130635965 + (TATG)n Simple_repeat Simple_repeat 2 63 0 5 729 21 0 0 0 chr6 18881371 18881392 -130635645 + AT_rich Low_complexity Low_complexity 1 21 0 5 729 409 352 31 0 chr6 18881427 18881586 -130635451 + RSINE1 SINE B4 2 165 0 5 729 31 96 0 0 chr6 18881721 18881815 -130635222 + AT_rich Low_complexity Low_complexity 1 94 0 5 729 232 336 53 26 chr6 18881918 18882031 -130635006 + MER3 DNA MER1_type 94 209 0 5 729 233 301 41 14 chr6 18882172 18882317 -130634720 - L1M4c LINE L1 -1595 5250 5102 5 729 392 293 97 63 chr6 18882373 18882672 -130634365 - L1_Rod LINE L1 -3393 2454 2146 5 729 276 317 117 41 chr6 18882843 18882883 -130634154 - L1M4c LINE L1 -4256 2593 2551 5 729 243 0 0 0 chr6 18882883 18882910 -130634127 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 729 290 317 117 41 chr6 18882910 18883185 -130633852 - L1M4c LINE L1 -4714 2136 1994 5 729 207 0 0 0 chr6 18883363 18883386 -130633651 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 5 729 2628 163 25 2 chr6 18883421 18883865 -130633172 - Lx3C LINE L1 0 6976 6523 5 729 561 247 45 153 chr6 18885554 18885979 -130631058 - MTE2a LTR MaLR 0 379 1 5 729 1090 301 103 154 chr6 18885981 18886186 -130630851 - MTE2a-int LTR MaLR -3 1577 1365 5 729 396 0 0 0 chr6 18886186 18886230 -130630807 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 729 1090 301 103 154 chr6 18886230 18886287 -130630750 - MTE2a-int LTR MaLR -216 1364 1317 5 729 243 0 0 0 chr6 18886287 18886314 -130630723 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 729 1090 301 103 154 chr6 18886314 18886539 -130630498 - MTE2a-int LTR MaLR -264 1316 1153 5 729 1253 14 0 7 chr6 18886539 18886686 -130630351 - B1_Mus2 SINE Alu 0 147 2 5 729 1090 301 103 154 chr6 18886686 18887076 -130629961 - MTE2a-int LTR MaLR -428 1152 743 5 729 2728 229 92 59 chr6 18887248 18888111 -130628926 + Lx7 LINE L1 6818 7680 -16 5 729 25 31 0 0 chr6 18888251 18888283 -130628754 + AT_rich Low_complexity Low_complexity 1 32 0 5 729 227 408 54 15 chr6 18890522 18890781 -130626256 - L1M3a LINE L1 -5636 319 51 5 729 272 307 44 57 chr6 18891435 18891594 -130625443 - L1M3d LINE L1 -5711 180 24 5 729 258 225 11 43 chr6 18891759 18891852 -130625185 - L1MEb LINE L1 -5066 1004 915 5 729 788 10 21 0 chr6 18892255 18892351 -130624686 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 5 729 378 0 0 0 chr6 18894093 18894135 -130622902 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 5 729 657 0 0 0 chr6 18894887 18894960 -130622077 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 5 729 5408 61 14 6 chr6 18895007 18895695 -130621342 + L1Md_F2 LINE L1 5877 6570 -12 5 729 221 297 130 11 chr6 18896134 18896226 -130620811 + MIRc SINE MIR 77 179 -89 5 729 182 317 93 29 chr6 18896615 18896787 -130620250 + L3 LINE CR1 4148 4330 -159 5 729 975 133 0 0 chr6 18897849 18897992 -130619045 - ORR1B2 LTR MaLR -39 328 186 5 729 378 262 29 0 chr6 18898011 18898114 -130618923 + PB1D9 SINE Alu 3 108 -12 5 729 217 241 24 60 chr6 18898131 18898143 -130618894 + B3A SINE B2 2 10 -188 5 729 554 337 100 5 chr6 18898143 18898343 -130618694 + B4A SINE B4 1 219 -73 5 729 2426 74 3 9 chr6 18898354 18898682 -130618355 + L1_Mus2 LINE L1 6240 6565 -1 5 729 209 33 33 0 chr6 18898693 18898723 -130618314 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 729 1722 167 65 48 chr6 18898760 18899113 -130617924 - ORR1B2 LTR MaLR -8 359 1 5 729 225 0 0 0 chr6 18899157 18899182 -130617855 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 729 366 23 0 0 chr6 18899182 18899224 -130617813 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 729 662 307 30 3 chr6 18899982 18900286 -130616751 + L1M2 LINE L1 2432 2743 -3400 5 729 273 57 0 0 chr6 18900295 18900330 -130616707 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 729 788 139 0 0 chr6 18900332 18900447 -130616590 - B1_Mus2 SINE Alu -8 139 25 5 729 222 37 0 0 chr6 18901455 18901482 -130615555 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 5 729 351 308 13 128 chr6 18901758 18901907 -130615130 - B4 SINE B4 -158 134 3 5 729 261 0 0 0 chr6 18902042 18902071 -130614966 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 729 467 304 171 12 chr6 18902164 18902410 -130614627 - B4A SINE B4 -7 285 1 5 729 428 295 44 18 chr6 18903505 18903619 -130613418 + PB1D10 SINE Alu 1 117 0 5 729 493 284 81 71 chr6 18903766 18903963 -130613074 - B3 SINE B2 -1 215 17 5 729 333 0 0 0 chr6 18904742 18904779 -130612258 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 5 729 791 200 0 0 chr6 18904782 18904922 -130612115 - B1_Mur3 SINE Alu -8 141 2 5 729 3758 233 92 6 chr6 18905146 18905273 -130611764 - RMER1A Other Other -3 1027 888 5 729 561 94 0 0 chr6 18905273 18905358 -130611679 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 729 3758 247 83 9 chr6 18905358 18906374 -130610663 - RMER1A Other Other -143 887 2 5 729 1492 270 20 18 chr6 18906506 18906955 -130610082 - RMER1B Other Other -616 450 1 5 729 489 181 0 0 chr6 18907402 18907507 -130609530 - Lx9 LINE L1 -2 7642 7538 5 729 602 186 7 0 chr6 18907779 18907919 -130609118 + (CA)n Simple_repeat Simple_repeat 2 142 0 5 729 330 190 0 39 chr6 18908317 18908421 -130608616 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 5 729 269 344 30 46 chr6 18908428 18908559 -130608478 - MLT1C LTR MaLR -287 180 52 5 729 183 80 0 0 chr6 18908793 18908818 -130608219 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 729 1532 196 94 13 chr6 18908962 18909335 -130607702 - Lx5 LINE L1 -682 6368 5966 5 729 773 153 51 0 chr6 18909335 18909472 -130607565 + Lx5 LINE L1 6362 6505 -545 5 729 6760 108 28 1 chr6 18909531 18911271 -130605766 - L1_Mus3 LINE L1 -3 6635 4864 5 729 2590 135 252 9 chr6 18911259 18911683 -130605354 + L1_Mm LINE L1 4166 4732 -1151 5 729 288 0 0 0 chr6 18911683 18911715 -130605322 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 729 2590 135 252 9 chr6 18911715 18911866 -130605171 + L1_Mm LINE L1 4733 4881 -1002 5 729 1218 241 51 0 chr6 18911859 18912154 -130604883 + Lx5 LINE L1 6488 6797 -253 5 729 1430 148 25 0 chr6 18912174 18912411 -130604626 - RLTR31B_Mm LTR ERVK -312 245 3 5 729 1250 206 24 16 chr6 18912412 18912663 -130604374 + Lx5 LINE L1 6792 7044 -6 5 729 22 0 0 0 chr6 18912663 18912685 -130604352 + AT_rich Low_complexity Low_complexity 1 22 0 5 729 21 36 0 0 chr6 18913343 18913371 -130603666 + AT_rich Low_complexity Low_complexity 1 28 0 5 729 232 80 160 0 chr6 18914310 18914360 -130602677 - Lx2 LINE L1 -81 6916 6859 5 729 703 312 101 40 chr6 18915121 18915628 -130601409 - MER34A1 LTR ERV1 -9 578 10 5 729 456 104 0 0 chr6 18915767 18915834 -130601203 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 729 1693 199 13 87 chr6 18916244 18916624 -130600413 + ORR1B1 LTR MaLR 41 392 -2 5 729 693 308 109 32 chr6 18916667 18917107 -130599930 + RMER5 LTR ERV1 39 512 -22 5 729 542 41 14 0 chr6 18917113 18917186 -130599851 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 729 529 302 62 82 chr6 18917235 18917602 -130599435 + L1MD LINE L1 4924 5286 -860 5 729 1457 69 5 0 chr6 18917602 18917790 -130599247 - B2_Mm1t SINE B2 -2 191 3 5 729 529 302 62 82 chr6 18917790 18917823 -130599214 + L1MD LINE L1 5287 5316 -830 5 729 367 322 110 56 chr6 18917885 18918204 -130598833 + L1MD3 LINE L1 7447 7782 -213 5 729 521 283 0 0 chr6 18918204 18918324 -130598713 + RSINE1 SINE B4 3 122 -43 5 729 565 73 0 12 chr6 18918324 18918407 -130598630 + IAPEY2_LTR LTR ERVK 1 82 -275 5 729 1144 49 0 0 chr6 18918407 18918551 -130598486 - L1Md_F3 LINE L1 -170 6414 6271 5 729 1698 178 18 30 chr6 18918551 18918592 -130598445 + IAPEY2_LTR LTR ERVK 52 90 -295 5 729 875 48 63 8 chr6 18918592 18918719 -130598318 + L1Md_F3 LINE L1 6437 6570 -14 5 729 2507 44 0 0 chr6 18918719 18919023 -130598014 + IAPEY2_LTR LTR ERVK 56 383 -2 5 729 637 320 88 125 chr6 18919161 18919672 -130597365 + MLT2B2 LTR ERVL 18 509 -6 5 729 317 202 256 16 chr6 18919676 18919797 -130597240 + L1MD3 LINE L1 7833 7982 -13 5 729 268 364 93 7 chr6 18919981 18920203 -130596834 - MIR SINE MIR -4 264 25 5 729 527 107 12 0 chr6 18920228 18920312 -130596725 + (GA)n Simple_repeat Simple_repeat 1 85 0 5 729 655 244 96 37 chr6 18920507 18920694 -130596343 - MTE2b LTR MaLR 0 379 182 5 729 215 293 13 0 chr6 18921514 18921589 -130595448 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 5 729 2066 84 0 0 chr6 18921690 18921976 -130595061 + L1_Mus1 LINE L1 6104 6389 -178 5 729 15783 97 29 1 chr6 18921976 18925177 -130591860 + L1Md_F2 LINE L1 307 3598 -2285 5 729 336 123 0 0 chr6 18925174 18925231 -130591806 + L1_Mm LINE L1 3048 3104 -2779 5 729 3415 64 2 0 chr6 18925230 18925683 -130591354 + L1Md_F2 LINE L1 5132 5585 -298 5 729 7096 75 20 21 chr6 18925684 18926669 -130590368 + L1Md_F2 LINE L1 5587 6570 -12 5 729 1158 84 78 6 chr6 18926702 18926881 -130590156 + L1_Mus1 LINE L1 6376 6567 0 5 729 270 0 0 0 chr6 18927473 18927503 -130589534 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 729 345 336 9 0 chr6 18928526 18928639 -130588398 + (TG)n Simple_repeat Simple_repeat 1 114 0 5 729 269 269 60 102 chr6 18928655 18928821 -130588216 - B2_Mm2 SINE B2 -29 166 8 5 729 185 178 0 22 chr6 18928821 18928867 -130588170 + CT-rich Low_complexity Low_complexity 4 48 0 5 729 5437 175 45 20 chr6 18928900 18930012 -130587025 - Lx4B LINE L1 -4 7054 5915 5 729 340 327 92 0 chr6 18930870 18931023 -130586014 + MER5A DNA MER1_type 22 188 -1 5 729 1860 237 56 14 chr6 18931614 18932115 -130584922 + RLTR11A LTR ERVK 7 528 0 5 729 22 35 0 0 chr6 18932178 18932207 -130584830 + AT_rich Low_complexity Low_complexity 1 29 0 5 729 195 42 0 0 chr6 18932233 18932257 -130584780 + (T)n Simple_repeat Simple_repeat 1 24 0 5 729 2628 50 6 6 chr6 18932259 18932601 -130584436 - MTA_Mm LTR MaLR -54 342 1 5 729 37265 55 4 6 chr6 18932697 18939235 -130577802 - L1Md_T LINE L1 0 6582 99 5 729 7679 56 3 2 chr6 18939252 18940896 -130576141 + L1Md_F3 LINE L1 4916 6562 -22 5 729 459 0 0 0 chr6 18940897 18940948 -130576089 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 729 6835 83 12 0 chr6 18940970 18942078 -130574959 + L1_Mus1 LINE L1 5447 6567 0 5 729 450 0 0 0 chr6 18942120 18942170 -130574867 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 5 729 1385 29 0 6 chr6 18942171 18942342 -130574695 + (TTC)n Simple_repeat Simple_repeat 2 171 0 5 729 366 77 0 0 chr6 18942342 18942394 -130574643 - B1_Mur4 SINE Alu -10 140 89 6 729 259 317 204 59 chr6 18942546 18942748 -130574289 - Zaphod DNA Tip100 -3552 479 253 6 729 1896 182 11 50 chr6 18942748 18943130 -130573907 - ORR1B2 LTR MaLR 0 367 1 6 729 259 317 204 59 chr6 18943130 18943182 -130573855 - Zaphod DNA Tip100 -3779 252 189 6 729 570 15 0 0 chr6 18945191 18945258 -130571779 + (CCTAT)n Simple_repeat Simple_repeat 2 68 0 6 729 211 50 49 24 chr6 18947031 18947072 -130569965 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 6 729 2289 241 32 42 chr6 18947110 18947191 -130569846 + L1_Mus3 LINE L1 503 578 -6079 6 729 2558 40 108 3 chr6 18947191 18947514 -130569523 - IAPEY2_LTR LTR ERVK 0 357 1 6 729 2898 174 17 99 chr6 18947514 18948060 -130568977 + L1_Mus3 LINE L1 579 1129 -5528 6 729 3194 46 21 0 chr6 18948060 18948448 -130568589 + MTA_Mm LTR MaLR 1 396 0 6 729 27723 125 8 12 chr6 18948448 18951804 -130565233 + L1_Mus3 LINE L1 1125 4441 -1442 6 729 4008 80 8 2 chr6 18951804 18952331 -130564706 + L1_Mus1 LINE L1 6038 6567 0 6 729 27723 124 8 7 chr6 18952331 18953586 -130563451 + L1_Mus3 LINE L1 4442 5675 -208 6 729 3578 104 55 4 chr6 18953586 18954109 -130562928 + L1_Mus2 LINE L1 6017 6566 0 6 729 5372 118 25 20 chr6 18954098 18954948 -130562089 + L1_Mus3 LINE L1 5778 6631 -7 6 729 417 20 0 0 chr6 18954959 18955009 -130562028 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 6 729 417 239 54 122 chr6 18955499 18955518 -130561519 - B2_Mm2 SINE B2 -2 193 176 6 729 2579 49 0 9 chr6 18955518 18955850 -130561187 - L1Md_F2 LINE L1 -14 6568 6240 6 729 627 239 54 122 chr6 18955850 18956035 -130561002 - B3 SINE B2 -20 175 3 6 729 1016 134 6 0 chr6 18956055 18956226 -130560811 + (TTCC)n Simple_repeat Simple_repeat 2 173 0 6 729 423 275 19 132 chr6 18956239 18956274 -130560763 - Lx5 LINE L1 -35 7015 6983 6 729 1246 62 17 0 chr6 18956274 18956450 -130560587 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 6 729 423 275 19 132 chr6 18956450 18956619 -130560418 - Lx5 LINE L1 -68 6982 6834 6 729 448 324 102 11 chr6 18956639 18956914 -130560123 - Lx8 LINE L1 0 7473 7174 6 729 30 45 0 0 chr6 18957052 18957096 -130559941 + AT_rich Low_complexity Low_complexity 1 44 0 6 729 25897 83 112 21 chr6 18957306 18962717 -130554320 - L1Md_F2 LINE L1 -13 6569 631 6 729 23 0 0 0 chr6 18962850 18962873 -130554164 + AT_rich Low_complexity Low_complexity 1 23 0 6 729 2757 88 16 0 chr6 18962958 18963343 -130553694 + L1_Mus1 LINE L1 6177 6567 0 6 729 2476 179 36 0 chr6 18963647 18964483 -130552554 + L1_Mur2 LINE L1 861 1727 -4150 6 729 4351 152 11 1 chr6 18964479 18965224 -130551813 + L1_Mur2 LINE L1 4643 5394 -483 6 729 1652 229 21 26 chr6 18965598 18965979 -130551058 - Lx4B LINE L1 -4 7054 6676 6 729 333 0 0 0 chr6 18965990 18966027 -130551010 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 729 183 310 27 27 chr6 18966762 18966835 -130550202 - L2c LINE L2 -26 3361 3289 6 729 264 277 56 9 chr6 18966835 18967013 -130550024 - L1MC LINE L1 -2345 5537 5355 6 729 802 216 119 9 chr6 18967042 18967252 -130549785 - Lx9 LINE L1 -241 7403 7171 6 729 293 247 0 41 chr6 18967250 18967347 -130549690 + Lx9 LINE L1 7394 7486 -158 6 729 1188 104 44 0 chr6 18967349 18967531 -130549506 + B2_Mm2 SINE B2 1 190 -5 6 729 29 70 0 0 chr6 18967573 18967630 -130549407 + AT_rich Low_complexity Low_complexity 1 57 0 6 729 596 233 23 0 chr6 18968128 18968257 -130548780 - Lx6 LINE L1 -220 7240 7109 6 729 1129 235 46 0 chr6 18968255 18968493 -130548544 + Lx6 LINE L1 6518 6766 -694 6 729 2288 93 3 55 chr6 18968530 18968873 -130548164 + ORR1A2 LTR MaLR 1 325 -2 6 729 234 0 0 0 chr6 18969002 18969028 -130548009 + (T)n Simple_repeat Simple_repeat 1 26 0 6 729 583 263 41 10 chr6 18969028 18969224 -130547813 - L1MA8 LINE L1 -387 5904 5703 6 729 302 261 66 22 chr6 18969419 18969556 -130547481 - L1MD LINE L1 -3233 2913 2771 6 729 3255 229 101 59 chr6 18969986 18970919 -130546118 + RMER1B Other Other 1 972 -94 6 729 1302 222 160 40 chr6 18970924 18971464 -130545573 - RMER20B LTR ERVK -22 605 1 6 729 398 159 34 0 chr6 18971464 18971552 -130545485 + RMER1B Other Other 976 1066 0 6 729 185 0 40 0 chr6 18971874 18971899 -130545138 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 729 29 70 0 0 chr6 18972456 18972513 -130544524 + AT_rich Low_complexity Low_complexity 1 57 0 6 729 608 38 13 0 chr6 18972681 18972760 -130544277 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 6 729 215 178 0 22 chr6 18972850 18972896 -130544141 + T-rich Low_complexity Low_complexity 5 49 0 6 729 680 133 0 9 chr6 18973257 18973363 -130543674 + Lx3C LINE L1 6721 6825 -151 6 729 2287 124 3 6 chr6 18973363 18973713 -130543324 + Lx2 LINE L1 6647 6995 -2 6 729 450 304 43 73 chr6 18974323 18974557 -130542480 - Tigger2b DNA MER2_type -114 612 386 6 729 289 350 68 83 chr6 18974608 18974932 -130542105 - ORR1E LTR MaLR -40 319 1 6 729 303 28 0 0 chr6 18975038 18975074 -130541963 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 729 308 400 63 84 chr6 18975926 18976210 -130540827 + B4A SINE B4 8 285 -7 6 729 231 256 50 113 chr6 18976396 18976537 -130540500 - Charlie2b DNA MER1_type -749 2033 1902 6 729 263 271 18 18 chr6 18976768 18976877 -130540160 - Lx7 LINE L1 -10 7686 7578 6 729 21 0 0 0 chr6 18977750 18977771 -130539266 + AT_rich Low_complexity Low_complexity 1 21 0 6 729 242 288 103 41 chr6 18978152 18978297 -130538740 + MER5A1 DNA MER1_type 4 157 -9 6 729 25 65 0 0 chr6 18978548 18978594 -130538443 + AT_rich Low_complexity Low_complexity 1 46 0 6 729 1215 71 6 0 chr6 18979067 18979237 -130537800 + L1_Mus2 LINE L1 6396 6566 0 6 729 332 233 20 122 chr6 18980651 18980798 -130536239 + Lx9 LINE L1 6809 6940 -704 6 729 662 321 12 0 chr6 18980817 18980982 -130536055 + B3 SINE B2 12 178 -38 6 729 729 268 75 91 chr6 18980983 18981303 -130535734 + Lx9 LINE L1 6945 7259 -385 6 729 432 0 0 0 chr6 18984022 18984070 -130532967 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 729 540 0 0 0 chr6 18984070 18984129 -130532908 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 729 486 0 0 0 chr6 18984362 18984416 -130532621 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 729 531 0 0 0 chr6 18984950 18985009 -130532028 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 729 2530 109 53 10 chr6 18985756 18986171 -130530866 - L1_Mus4 LINE L1 -3 6633 6201 6 729 293 370 39 39 chr6 18986312 18986596 -130530441 - HERV16-int LTR ERVL -2730 2266 1983 6 729 249 308 34 0 chr6 18986924 18987041 -130529996 - L1MB4 LINE L1 -39 6141 6021 6 729 373 369 49 16 chr6 18987375 18987681 -130529356 - HERV16-int LTR ERVL -3723 1273 958 6 729 714 332 31 3 chr6 18988227 18988617 -130528420 - L1MA4 LINE L1 -368 5932 5532 6 729 1072 222 18 4 chr6 18991082 18991308 -130525729 - MTD LTR MaLR 0 419 191 6 729 4423 254 39 25 chr6 18991369 18991696 -130525341 - Lx7 LINE L1 -8 7688 7363 6 729 257 0 0 29 chr6 18991696 18991730 -130525307 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 729 4423 254 39 25 chr6 18991730 18992587 -130524450 - Lx7 LINE L1 -334 7362 6488 6 729 635 237 130 35 chr6 18992682 18992933 -130524104 - Lx7 LINE L1 -1365 6095 5833 6 729 207 105 26 0 chr6 18994522 18994560 -130522477 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 729 748 94 158 0 chr6 18994565 18994692 -130522345 - B1_Mus2 SINE Alu 0 147 1 6 729 207 69 0 0 chr6 18994935 18994964 -130522073 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 6 729 250 397 42 52 chr6 18995629 18995916 -130521121 + MLT1E1A LTR MaLR 389 672 -8 6 729 351 44 0 0 chr6 18996019 18996064 -130520973 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 729 674 339 13 26 chr6 18996316 18996543 -130520494 - B4A SINE B4 -26 266 43 6 729 898 208 254 37 chr6 18996549 18996848 -130520189 - Lx4B LINE L1 -20 7038 6675 6 729 1319 175 4 13 chr6 18996848 18997080 -130519957 + 7SK RNA RNA 14 243 -88 6 729 603 325 41 48 chr6 18997979 18998270 -130518767 - MER2 DNA MER2_type -56 289 1 6 729 23 0 0 0 chr6 18998468 18998491 -130518546 + AT_rich Low_complexity Low_complexity 1 23 0 6 729 1163 221 25 32 chr6 18998550 18998831 -130518206 - Lx4B LINE L1 -5 7053 6775 6 729 25 0 0 0 chr6 18998948 18998973 -130518064 + AT_rich Low_complexity Low_complexity 1 25 0 6 729 1839 308 75 32 chr6 18999000 18999930 -130517107 - Lx8 LINE L1 -30 7443 6474 6 729 270 276 13 38 chr6 19000016 19000095 -130516942 - Lx8 LINE L1 -998 6475 6399 1 729 9129 200 42 86 chr6 19000080 19000979 -130516058 - L1Md_F LINE L1 -833 5050 4192 2 729 324 0 0 0 chr6 19000979 19001015 -130516022 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3 729 9129 200 42 86 chr6 19001015 19001858 -130515179 - L1Md_F LINE L1 -1692 4191 3442 2 729 693 0 0 0 chr6 19001858 19001935 -130515102 + (TTTCC)n Simple_repeat Simple_repeat 2 78 0 4 729 240 35 0 0 chr6 19001936 19001965 -130515072 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 5 729 9129 200 42 86 chr6 19001965 19003195 -130513842 - L1Md_F LINE L1 -2442 3441 2205 2 729 7460 64 20 1 chr6 19003190 19004171 -130512866 + L1Md_F2 LINE L1 4586 5585 -298 6 729 7825 55 3 1 chr6 19004172 19005154 -130511883 + L1Md_F2 LINE L1 5587 6570 -12 6 91 6562 116 37 3 chr6 19005155 19006905 -130510132 - L1Md_F LINE L1 -3690 2193 383 2 730 876 290 27 76 chr6 19006908 19007397 -130509640 - L1M3 LINE L1 -1826 4314 3850 7 730 187 55 26 53 chr6 19007472 19007510 -130509527 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 8 730 680 81 50 20 chr6 19007511 19007612 -130509425 - B1_Mus2 SINE Alu 0 147 44 9 730 307 226 71 12 chr6 19007540 19007625 -130509412 - MT2B LTR ERVL -323 278 189 1 730 284 163 41 0 chr6 19007778 19007827 -130509210 + ERVL-B4-int LTR ERVL 2395 2445 -3316 1 730 876 94 0 0 chr6 19007827 19007955 -130509082 + (TTTC)n Simple_repeat Simple_repeat 1 128 0 1 730 31 0 0 0 chr6 19007955 19007986 -130509051 + AT_rich Low_complexity Low_complexity 1 31 0 1 730 3326 243 75 40 chr6 19008027 19009521 -130507516 - Lx5 LINE L1 -19 7039 5592 1 730 433 311 51 6 chr6 19009521 19009699 -130507338 + ERVL-B4-int LTR ERVL 2377 2562 -3152 1 730 354 300 124 36 chr6 19009889 19010138 -130506899 + ERVL-B4-int LTR ERVL 2908 3178 -2583 1 730 279 0 0 0 chr6 19010410 19010441 -130506596 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 730 279 0 0 0 chr6 19010441 19010471 -130506566 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 730 826 278 64 72 chr6 19010487 19010906 -130506131 + ERVL-B4-int LTR ERVL 3514 3929 -1785 1 730 344 200 27 0 chr6 19011651 19011726 -130505311 - MER53 DNA hAT -116 77 1 1 730 56 0 0 0 chr6 19011867 19011923 -130505114 + AT_rich Low_complexity Low_complexity 1 56 0 1 730 209 87 43 21 chr6 19012239 19012286 -130504751 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 1 730 1038 74 11 8 chr6 19014028 19014081 -130502956 + RMER6C LTR ERVK 86 127 -563 2 730 1943 190 147 26 chr6 19014081 19014550 -130502487 - RLTR11A LTR ERVK -2 526 1 2 730 1038 175 48 43 chr6 19014550 19014775 -130502262 + RMER6C LTR ERVK 128 351 -369 2 730 185 65 0 31 chr6 19015665 19015697 -130501340 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2 730 760 212 0 21 chr6 19015698 19015838 -130501199 - B1_Mus1 SINE Alu -1 147 11 2 730 394 275 23 70 chr6 19015728 19015857 -130501180 - MT2B LTR ERVL -324 277 155 2 730 299 203 14 0 chr6 19016177 19016251 -130500786 + CT-rich Low_complexity Low_complexity 2 76 0 2 730 249 309 83 21 chr6 19018347 19018443 -130498594 + LTR16A LTR ERVL 94 195 -256 2 730 372 320 47 8 chr6 19018521 19018650 -130498387 + LTR16A LTR ERVL 303 436 -15 2 730 22 56 0 0 chr6 19018814 19018850 -130498187 + AT_rich Low_complexity Low_complexity 1 36 0 2 730 37818 31 0 0 chr6 19018875 19025489 -130491548 - L1Md_T LINE L1 0 6585 1 2 730 368 301 103 19 chr6 19025503 19025716 -130491321 + L1MA4 LINE L1 5320 5550 -753 2 730 440 309 39 39 chr6 19025769 19026001 -130491036 + L1MA4 LINE L1 5693 5924 -376 2 730 315 0 0 0 chr6 19026233 19026268 -130490769 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 730 36 62 0 0 chr6 19026281 19026345 -130490692 + AT_rich Low_complexity Low_complexity 1 64 0 3 730 7327 76 1 1 chr6 19027000 19027950 -130489087 + L1_Mus2 LINE L1 5617 6566 0 3 730 807 126 0 0 chr6 19028243 19028370 -130488667 + (TA)n Simple_repeat Simple_repeat 1 127 0 3 730 3881 248 106 81 chr6 19029116 19031621 -130485416 + Lx5 LINE L1 4458 7031 -19 3 730 25 90 0 0 chr6 19031635 19031702 -130485335 + AT_rich Low_complexity Low_complexity 1 67 0 3 730 21 36 0 0 chr6 19032151 19032179 -130484858 + AT_rich Low_complexity Low_complexity 1 28 0 3 730 222 200 0 0 chr6 19032189 19032229 -130484808 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 730 300 334 8 89 chr6 19032525 19032648 -130484389 + LTR16B LTR ERVL 70 181 -299 3 730 468 165 44 44 chr6 19032650 19032764 -130484273 - LTR37A LTR ERV1 0 426 313 3 730 315 307 83 11 chr6 19032996 19033177 -130483860 - MER31-int LTR ERV1 -684 4252 4059 4 730 870 272 112 37 chr6 19033254 19033762 -130483275 + L1MB1 LINE L1 5542 6087 -102 4 730 194 148 19 0 chr6 19033807 19033861 -130483176 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 730 582 247 116 96 chr6 19034579 19034924 -130482113 + Lx9 LINE L1 7284 7635 -9 4 730 985 309 98 35 chr6 19035096 19035742 -130481295 + RMER13A LTR ERVK 30 753 -107 4 730 201 286 32 0 chr6 19036057 19036120 -130480917 + CT-rich Low_complexity Low_complexity 1 65 0 4 730 288 189 0 0 chr6 19036264 19036338 -130480699 + CT-rich Low_complexity Low_complexity 2 75 0 4 730 314 243 58 21 chr6 19036936 19037066 -130479971 - L1MB1 LINE L1 -373 5927 5794 4 730 5290 231 37 15 chr6 19037049 19038258 -130478779 - Lx5 LINE L1 -11 7039 5804 4 730 580 13 13 13 chr6 19039859 19039937 -130477100 + (TTTA)n Simple_repeat Simple_repeat 4 81 0 4 730 742 258 20 87 chr6 19040717 19041135 -130475902 - ORR1C2 LTR MaLR 0 384 31 5 730 249 284 23 0 chr6 19041143 19041231 -130475806 + Lx9 LINE L1 7366 7455 -189 5 730 6622 41 0 4 chr6 19041232 19042038 -130474999 + L1Md_F2 LINE L1 5780 6582 0 5 730 945 119 41 6 chr6 19042044 19042213 -130474824 + L1_Mus3 LINE L1 6464 6638 0 5 730 22 35 0 0 chr6 19042248 19042277 -130474760 + AT_rich Low_complexity Low_complexity 1 29 0 5 730 361 200 31 10 chr6 19042285 19042578 -130474459 + (TA)n Simple_repeat Simple_repeat 1 299 0 5 730 2140 89 43 3 chr6 19042605 19042910 -130474127 - ORR1A2 LTR MaLR -8 319 3 5 730 1195 289 38 73 chr6 19044800 19045697 -130471340 - Lx8 LINE L1 -1541 5932 5087 5 730 255 383 105 0 chr6 19045711 19045873 -130471164 + B4 SINE B4 41 219 -73 5 730 351 0 0 0 chr6 19045933 19045972 -130471065 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 730 324 264 9 43 chr6 19046231 19046346 -130470691 - Lx5 LINE L1 -3 7047 6937 6 730 373 195 39 0 chr6 19046352 19046429 -130470608 + Lx5 LINE L1 6527 6606 -444 6 730 1179 69 0 0 chr6 19046433 19046592 -130470445 + IAPLTR3 LTR ERVK 1 159 -167 6 730 3400 42 5 0 chr6 19046592 19046997 -130470040 + IAPLTR3-int LTR ERVK 6396 6802 -19 6 730 2428 62 3 33 chr6 19046998 19047332 -130469705 + IAPLTR3 LTR ERVK 3 326 0 6 730 260 61 0 0 chr6 19047332 19047365 -130469672 - IAPLTR3 LTR ERVK -291 35 3 6 730 1431 252 17 3 chr6 19047372 19047667 -130469370 + Lx5 LINE L1 6610 6908 -142 6 730 336 24 0 0 chr6 19048388 19048429 -130468608 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 730 23 33 0 0 chr6 19048481 19048511 -130468526 + AT_rich Low_complexity Low_complexity 1 30 0 6 730 1470 175 15 8 chr6 19048513 19048778 -130468259 - Lx4A LINE L1 -1 7057 6791 6 730 553 103 17 25 chr6 19049735 19049855 -130467182 + (TA)n Simple_repeat Simple_repeat 2 120 0 6 730 25 75 0 0 chr6 19050158 19050211 -130466826 + AT_rich Low_complexity Low_complexity 1 53 0 6 730 228 100 0 0 chr6 19050233 19050273 -130466764 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 7 730 924 42 0 8 chr6 19050273 19050392 -130466645 - B1_Mus1 SINE Alu 0 148 31 7 730 560 125 10 0 chr6 19050618 19050714 -130466323 + (TC)n Simple_repeat Simple_repeat 2 98 0 7 730 3771 113 0 0 chr6 19051181 19051721 -130465316 + Lx LINE L1 6112 6651 -3 7 730 265 143 0 0 chr6 19051722 19051764 -130465273 + ID_B1 SINE B4 183 224 0 7 730 826 284 66 78 chr6 19053191 19053794 -130463243 - L1MDa LINE L1 -4377 2256 1661 7 730 324 267 10 0 chr6 19053806 19053907 -130463130 - L1MDa LINE L1 -5416 1217 1116 7 730 4989 61 3 22 chr6 19054519 19055188 -130461849 - L1_Mus2 LINE L1 0 6566 5911 7 730 1974 112 21 63 chr6 19055635 19055967 -130461070 - ORR1A3 LTR MaLR -8 318 1 7 730 21 71 0 0 chr6 19055982 19056024 -130461013 + AT_rich Low_complexity Low_complexity 1 42 0 7 730 258 351 50 36 chr6 19056280 19056419 -130460618 + MLT1A1 LTR MaLR 251 391 -17 7 730 205 86 29 0 chr6 19056601 19056636 -130460401 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 8 730 396 221 124 17 chr6 19057093 19057316 -130459721 + L1MC LINE L1 5184 5425 -755 8 730 899 49 16 0 chr6 19057321 19057443 -130459594 + B1_Mus1 SINE Alu 25 148 0 8 730 247 238 79 0 chr6 19057455 19057518 -130459519 + L1MC LINE L1 5461 5528 -805 8 730 5810 94 0 1 chr6 19057637 19058437 -130458600 - L1_Mus1 LINE L1 -1 6566 5768 8 730 2900 79 0 0 chr6 19058437 19058804 -130458233 + L1_Mus1 LINE L1 5412 5778 -105 8 730 703 295 23 33 chr6 19058804 19059018 -130458019 - B4 SINE B4 -70 222 11 8 730 244 381 70 44 chr6 19059074 19059346 -130457691 - MLT1D LTR MaLR -201 304 26 8 730 425 50 17 0 chr6 19059641 19059701 -130457336 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 730 242 300 0 24 chr6 19059828 19059910 -130457127 - B3 SINE B2 -135 81 2 8 730 246 156 0 0 chr6 19060764 19060809 -130456228 + (TA)n Simple_repeat Simple_repeat 2 46 0 8 730 261 0 0 0 chr6 19061294 19061323 -130455714 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 730 248 350 71 41 chr6 19062969 19063139 -130453898 - MLT2B5 LTR ERVL -199 402 228 9 730 4954 232 107 56 chr6 19063140 19063516 -130453521 + Lx7 LINE L1 6167 6650 -1046 9 730 1801 188 51 17 chr6 19063516 19063867 -130453170 + ORR1B2 LTR MaLR 5 367 0 9 730 4954 232 107 56 chr6 19063867 19064942 -130452095 + Lx7 LINE L1 6651 7692 -4 9 730 932 269 19 72 chr6 19065308 19065628 -130451409 - Lx2B LINE L1 -1 6999 6697 9 730 492 62 0 0 chr6 19065807 19065871 -130451166 + (TC)n Simple_repeat Simple_repeat 1 64 0 9 730 1024 137 0 0 chr6 19065871 19066017 -130451020 - B1_Mus1 SINE Alu 0 148 3 9 730 21 0 0 0 chr6 19066434 19066455 -130450582 + AT_rich Low_complexity Low_complexity 1 21 0 9 730 300 311 35 40 chr6 19066458 19066632 -130450405 - L1MCa LINE L1 -4963 1545 1373 9 730 7497 169 21 22 chr6 19066658 19067722 -130449315 - Lx3C LINE L1 -18 6958 5885 9 730 506 57 14 0 chr6 19067722 19067792 -130449245 + (TA)n Simple_repeat Simple_repeat 1 71 0 9 730 7497 161 7 6 chr6 19067792 19068370 -130448667 - Lx3C LINE L1 -1092 5884 5335 9 730 438 108 0 0 chr6 19068824 19068898 -130448139 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 730 273 77 4 20 chr6 19068943 19068984 -130448053 - Lx2 LINE L1 -1082 5918 5877 1 730 540 0 0 0 chr6 19068984 19069044 -130447993 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 730 330 45 0 0 chr6 19069227 19069271 -130447766 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 730 450 0 0 0 chr6 19071665 19071715 -130445322 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 730 327 257 44 44 chr6 19071808 19071860 -130445177 - MLT1A1 LTR MaLR 0 408 357 1 730 3138 32 0 5 chr6 19071860 19072235 -130444802 - L1Md_F2 LINE L1 -10 6572 6200 1 730 327 257 44 44 chr6 19072235 19072296 -130444741 - MLT1A1 LTR MaLR -52 356 295 1 730 383 311 129 16 chr6 19072396 19072707 -130444330 + Lx9 LINE L1 7224 7569 -75 1 730 495 0 0 0 chr6 19073331 19073386 -130443651 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 730 2189 293 37 45 chr6 19073437 19074198 -130442839 - Lx7 LINE L1 -318 7378 6624 1 730 209 211 0 19 chr6 19075033 19075086 -130441951 + CT-rich Low_complexity Low_complexity 1 52 0 1 730 601 342 60 40 chr6 19075166 19075416 -130441621 - B4A SINE B4 -2 290 36 1 730 3386 90 80 17 chr6 19075364 19075904 -130441133 + MTA_Mm-int LTR MaLR 525 1098 0 1 730 3325 28 8 0 chr6 19075904 19076297 -130440740 + MTA_Mm LTR MaLR 1 396 0 1 730 301 246 0 0 chr6 19076298 19076359 -130440678 - B4A SINE B4 -231 61 1 1 730 24 0 0 0 chr6 19076365 19076389 -130440648 + AT_rich Low_complexity Low_complexity 1 24 0 1 730 349 263 39 48 chr6 19076421 19076525 -130440512 + MLT1D LTR MaLR 12 114 -391 1 730 530 208 0 33 chr6 19076607 19076791 -130440246 + GA-rich Low_complexity Low_complexity 1 178 0 1 730 283 168 62 21 chr6 19076797 19076821 -130440216 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 1 730 203 0 0 36 chr6 19076821 19076849 -130440188 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 730 283 168 62 21 chr6 19076849 19076961 -130440076 + (TAGA)n Simple_repeat Simple_repeat 1 116 0 1 730 270 162 27 13 chr6 19076961 19077036 -130440001 + GA-rich Low_complexity Low_complexity 3 78 0 1 730 12734 103 13 14 chr6 19077732 19080471 -130436566 + L1Md_F LINE L1 296 3023 -2860 1 730 1377 85 0 0 chr6 19080467 19080656 -130436381 + L1_Mm LINE L1 2560 2748 -3135 1 730 421 222 11 6 chr6 19080656 19080765 -130436272 - URR1B DNA MER1_type -46 179 73 1 730 2222 175 70 14 chr6 19081086 19081515 -130435522 - Lx2B LINE L1 -1 6999 6547 1 730 276 77 0 0 chr6 19082496 19082535 -130434502 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 730 340 293 75 60 chr6 19083049 19083249 -130433788 - LTR37B LTR ERV1 -1 467 265 1 730 207 0 0 0 chr6 19083450 19083473 -130433564 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 730 294 29 0 0 chr6 19084961 19084996 -130432041 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 730 6601 73 20 3 chr6 19085070 19085948 -130431089 - RLTR13B1 LTR ERVK 0 893 1 1 730 216 360 98 9 chr6 19086392 19086504 -130430533 + L2 LINE L2 2356 2477 -942 1 730 23 0 0 0 chr6 19086755 19086778 -130430259 + AT_rich Low_complexity Low_complexity 1 23 0 1 730 1167 81 0 0 chr6 19086778 19086926 -130430111 - B1_Mus1 SINE Alu 0 148 1 1 730 19282 116 42 8 chr6 19086999 19087793 -130429244 + L1_Mus1 LINE L1 2699 3481 -2402 1 730 333 62 0 0 chr6 19087793 19087841 -130429196 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 730 19282 106 30 7 chr6 19087841 19090809 -130426228 + L1_Mus1 LINE L1 3482 6567 0 1 730 396 0 0 0 chr6 19090814 19090858 -130426179 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 730 1192 195 54 4 chr6 19090898 19091156 -130425881 + L1_Mur2 LINE L1 5363 5633 -244 1 730 493 204 13 20 chr6 19091516 19091666 -130425371 - Lx9 LINE L1 -1 7643 7495 1 730 433 259 53 0 chr6 19092046 19092177 -130424860 - Lx9 LINE L1 -261 7383 7246 1 730 21 0 0 0 chr6 19092624 19092645 -130424392 + AT_rich Low_complexity Low_complexity 1 21 0 1 730 269 268 81 11 chr6 19092683 19092770 -130424267 + MER58A DNA MER1_type 52 144 -80 1 730 2588 188 25 24 chr6 19092859 19093519 -130423518 + RLTR31_Mm LTR ERVK 1 561 0 1 730 464 223 0 0 chr6 19093521 19093624 -130423413 - Lx7 LINE L1 -28 7668 7566 1 730 6109 107 7 45 chr6 19093627 19095481 -130421556 + L1Md_A LINE L1 284 2064 -3819 1 730 35282 37 1 1 chr6 19095468 19101801 -130415236 + L1Md_T LINE L1 1 5589 -297 1 730 8942 7 0 0 chr6 19101801 19102797 -130414240 + L1Md_T LINE L1 5590 6585 0 1 730 24412 73 2 0 chr6 19102797 19106048 -130410989 + L1Md_A LINE L1 2034 5289 -594 1 730 6072 63 0 12 chr6 19106048 19106846 -130410191 + L1Md_A LINE L1 5783 6570 -12 1 730 225 200 0 0 chr6 19106958 19107003 -130410034 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 730 2056 315 59 29 chr6 19108275 19108974 -130408063 + Lx8 LINE L1 6264 6987 -486 1 730 1149 131 9 24 chr6 19108974 19109185 -130407852 + Lx LINE L1 6441 6648 -6 1 730 327 65 0 0 chr6 19109193 19109239 -130407798 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 1 730 2056 315 59 29 chr6 19109239 19109363 -130407674 + Lx8 LINE L1 6995 7120 -353 1 730 271 213 0 31 chr6 19109363 19109460 -130407577 + (CATA)n Simple_repeat Simple_repeat 1 94 0 1 730 608 181 35 12 chr6 19109505 19109678 -130407359 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 1 730 263 264 14 0 chr6 19109682 19109754 -130407283 + (CATA)n Simple_repeat Simple_repeat 3 75 0 1 730 21 57 0 0 chr6 19111721 19111756 -130405281 + AT_rich Low_complexity Low_complexity 1 35 0 1 730 3152 231 63 28 chr6 19111833 19112079 -130404958 + Lx6 LINE L1 95 368 -7360 1 730 444 37 0 0 chr6 19112079 19112133 -130404904 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 730 3152 231 63 28 chr6 19112133 19112738 -130404299 + Lx6 LINE L1 369 975 -6753 1 730 263 150 0 0 chr6 19112723 19112763 -130404274 + L1_Mur3 LINE L1 5508 5547 -333 1 730 1592 288 76 59 chr6 19112747 19113077 -130403960 + Lx6 LINE L1 5778 6122 -1338 1 730 1685 199 86 0 chr6 19113077 19113438 -130403599 + ORR1B1 LTR MaLR 1 392 -2 1 730 1592 289 101 72 chr6 19113438 19113450 -130403587 + Lx6 LINE L1 6123 6156 -1304 1 730 252 0 0 0 chr6 19113450 19113478 -130403559 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 730 1592 289 101 72 chr6 19113478 19113920 -130403117 + Lx6 LINE L1 6157 6576 -884 1 730 236 352 80 6 chr6 19115271 19115434 -130401603 - MIRb SINE MIR -71 197 23 1 730 242 87 22 0 chr6 19115464 19115510 -130401527 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 730 431 317 32 20 chr6 19116646 19116897 -130400140 - ERVL-E-int LTR ERVL -5124 543 290 1 730 1038 309 59 53 chr6 19117169 19117681 -130399356 - Lx8 LINE L1 -3 7470 6956 1 730 3478 256 34 82 chr6 19117729 19119785 -130397252 + Lx5 LINE L1 5096 7037 -13 1 730 231 188 0 0 chr6 19120559 19120607 -130396430 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 730 312 109 18 0 chr6 19120993 19121048 -130395989 + Lx2 LINE L1 6931 6986 -11 1 730 1218 100 0 0 chr6 19121065 19121245 -130395792 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 730 823 284 36 49 chr6 19121781 19122110 -130394927 - L1MEf LINE L1 -4551 2486 2162 1 730 388 348 111 40 chr6 19122110 19122487 -130394550 - MLT1A1 LTR MaLR 0 408 5 1 730 275 287 11 0 chr6 19122559 19122615 -130394422 + polypyrimidine Low_complexity Low_complexity 41 96 0 1 730 387 113 0 0 chr6 19122615 19122677 -130394360 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 730 275 287 11 0 chr6 19122677 19122714 -130394323 + polypyrimidine Low_complexity Low_complexity 3 40 0 1 730 522 197 0 0 chr6 19122819 19122936 -130394101 + (TA)n Simple_repeat Simple_repeat 2 118 0 1 730 244 143 0 35 chr6 19123041 19123099 -130393938 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 730 415 349 94 55 chr6 19123163 19123359 -130393678 - B4A SINE B4 -8 284 77 1 730 258 32 0 0 chr6 19123359 19123390 -130393647 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 730 415 349 94 55 chr6 19123390 19123448 -130393589 - B4A SINE B4 -216 76 20 1 730 1103 254 48 24 chr6 19123505 19123800 -130393237 - Lx6 LINE L1 -26 7434 7133 1 730 4239 95 47 6 chr6 19123839 19124358 -130392679 + Lx3_Mus LINE L1 6353 6871 -138 1 730 204 40 0 0 chr6 19124358 19124383 -130392654 + (GGGTG)n Simple_repeat Simple_repeat 5 29 0 1 730 4239 95 47 6 chr6 19124383 19124486 -130392551 + Lx3_Mus LINE L1 6872 7000 -9 1 730 522 254 157 25 chr6 19125396 19125594 -130391443 + MLT1A0 LTR MaLR 142 365 0 1 730 1091 88 14 0 chr6 19125644 19125792 -130391245 + B1_Mur4 SINE Alu 1 150 0 1 730 351 333 60 45 chr6 19125857 19126190 -130390847 - L1MEf LINE L1 -6001 422 85 1 730 219 157 0 0 chr6 19126631 19126682 -130390355 + CT-rich Low_complexity Low_complexity 1 51 0 1 730 474 18 0 0 chr6 19126688 19126743 -130390294 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 730 1570 187 26 9 chr6 19126869 19127208 -130389829 + Lx2B LINE L1 6655 6999 -1 1 730 21 57 0 0 chr6 19128349 19128384 -130388653 + AT_rich Low_complexity Low_complexity 1 35 0 1 730 252 197 16 0 chr6 19128384 19128445 -130388592 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 730 394 328 52 8 chr6 19128475 19128622 -130388415 - B3A SINE B2 -65 151 1 1 730 852 104 0 0 chr6 19128691 19128816 -130388221 + (TTCC)n Simple_repeat Simple_repeat 1 125 0 1 730 297 75 0 0 chr6 19128819 19128859 -130388178 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1 730 378 292 46 101 chr6 19129332 19129698 -130387339 - L1_Mur3 LINE L1 -471 5409 5064 1 730 379 242 91 0 chr6 19129821 19129920 -130387117 + RLTR40 LTR ERVK 1 108 -709 1 730 38 0 0 0 chr6 19130253 19130291 -130386746 + AT_rich Low_complexity Low_complexity 1 38 0 1 730 21 0 0 0 chr6 19130366 19130387 -130386650 + AT_rich Low_complexity Low_complexity 1 21 0 1 730 7620 67 3 2 chr6 19130387 19131717 -130385320 - L1Md_F2 LINE L1 0 6582 5253 1 730 225 62 62 0 chr6 19131859 19131907 -130385130 + (TAAAAA)n Simple_repeat Simple_repeat 4 54 0 1 730 2496 233 59 44 chr6 19132171 19132813 -130384224 + RLTR40 LTR ERVK 166 817 0 1 730 664 276 96 34 chr6 19132818 19133333 -130383704 + Lx7 LINE L1 5485 6058 -1415 1 730 473 126 165 0 chr6 19133998 19134101 -130382936 - Lx2B LINE L1 0 7000 6881 1 730 305 311 58 40 chr6 19134201 19134549 -130382488 - L1MA6 LINE L1 -26 6274 5921 1 730 3658 218 19 19 chr6 19135021 19136263 -130380774 + L1VL4 LINE L1 509 1756 -1803 1 91 6035 78 0 0 chr6 19136263 19137055 -130379982 + L1_Mus2 LINE L1 5774 6565 -1 1 731 1635 195 89 0 chr6 19137076 19137425 -130379612 + Lx2B LINE L1 5361 5740 -146 1 731 3476 147 27 0 chr6 19137424 19137974 -130379063 - L1_Mm LINE L1 -84 5799 5235 1 731 495 0 0 0 chr6 19137974 19138029 -130379008 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 731 3476 147 27 0 chr6 19138029 19138063 -130378974 - L1_Mm LINE L1 -649 5234 5200 1 731 3232 182 43 140 chr6 19138061 19138457 -130378580 + L1_Mus3 LINE L1 5761 6156 -482 2 731 5415 92 9 9 chr6 19138457 19138833 -130378204 + L1_Mus3 LINE L1 5862 6238 -400 2 731 2728 110 5 10 chr6 19138833 19139238 -130377799 + RLTR9D LTR ERVK 1 403 0 2 731 5415 92 9 9 chr6 19139238 19139637 -130377400 + L1_Mus3 LINE L1 6239 6637 -1 2 731 3232 182 43 140 chr6 19139637 19140190 -130376847 + L1_Mus3 LINE L1 6157 6618 -20 2 731 4746 214 65 36 chr6 19140210 19140521 -130376516 + Lx2B LINE L1 5727 6055 -945 1 731 2711 40 0 27 chr6 19140521 19140857 -130376180 - IAPLTR2b LTR ERVK 0 327 1 2 731 4746 214 65 36 chr6 19140857 19141784 -130375253 + Lx2B LINE L1 6056 7000 0 1 731 7248 72 20 4 chr6 19141872 19142851 -130374186 + L1Md_F2 LINE L1 5588 6582 0 2 731 1771 138 80 10 chr6 19143089 19143389 -130373648 - ORR1A4 LTR MaLR -8 321 1 2 731 1093 154 77 55 chr6 19144393 19144716 -130372321 + Lx LINE L1 6277 6654 0 2 731 225 261 109 43 chr6 19145447 19145539 -130371498 - Charlie24 DNA MER1_type -731 1719 1622 2 731 899 272 16 20 chr6 19145539 19145787 -130371250 + Lx5 LINE L1 6799 7045 -5 2 731 1303 289 177 14 chr6 19147008 19147786 -130369251 - Lx6 LINE L1 -1 7459 6555 2 731 411 21 0 0 chr6 19148193 19148241 -130368796 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 2 731 566 269 17 52 chr6 19148366 19148597 -130368440 - Lx6 LINE L1 -1362 6098 5876 2 731 634 204 85 7 chr6 19148596 19148749 -130368288 - L1_Mur3 LINE L1 -362 5518 5354 2 731 2403 200 33 18 chr6 19148742 19149286 -130367751 - Lx6 LINE L1 -3 5877 5326 2 731 24 32 0 0 chr6 19149606 19149637 -130367400 + AT_rich Low_complexity Low_complexity 1 31 0 2 731 215 225 0 0 chr6 19149653 19149693 -130367344 + (CATA)n Simple_repeat Simple_repeat 4 43 0 2 731 242 87 22 0 chr6 19150135 19150181 -130366856 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 731 437 312 167 27 chr6 19150884 19151141 -130365896 - Lx9 LINE L1 -277 7367 7075 2 731 1217 21 0 0 chr6 19152164 19152304 -130364733 + B1_Mus2 SINE Alu 2 141 -6 2 731 429 20 0 0 chr6 19152306 19152356 -130364681 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2 731 32 0 0 0 chr6 19152420 19152452 -130364585 + AT_rich Low_complexity Low_complexity 1 32 0 2 731 1173 61 0 0 chr6 19152569 19152717 -130364320 - B1_Mus1 SINE Alu 0 148 1 2 731 329 155 60 7 chr6 19152730 19152879 -130364158 + (TA)n Simple_repeat Simple_repeat 1 157 0 2 731 305 286 39 39 chr6 19152934 19153036 -130364001 - PB1D7 SINE Alu 0 120 19 2 731 2067 155 24 2 chr6 19153644 19154124 -130362913 - RMER17B LTR ERVK -397 561 1 2 731 652 254 41 6 chr6 19154131 19154301 -130362736 + ORR1D1 LTR MaLR 11 186 -188 2 731 447 95 0 0 chr6 19154301 19154375 -130362662 + (TC)n Simple_repeat Simple_repeat 2 75 0 2 731 690 241 45 63 chr6 19154384 19154416 -130362621 + ORR1D1 LTR MaLR 158 184 -190 2 731 1053 106 0 0 chr6 19154416 19154596 -130362441 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 731 690 241 45 63 chr6 19154596 19154784 -130362253 + ORR1D1 LTR MaLR 185 374 0 2 731 13094 179 16 13 chr6 19155524 19157824 -130359213 - L1_Mur1 LINE L1 -930 4956 2660 2 731 342 67 0 0 chr6 19157824 19157869 -130359168 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 731 13094 179 16 13 chr6 19157869 19158144 -130358893 - L1_Mur1 LINE L1 -3227 2659 2375 2 731 6547 153 20 10 chr6 19158148 19159761 -130357276 + Lx LINE L1 4903 6533 -121 2 731 3567 127 228 35 chr6 19159761 19160150 -130356887 + RMER17A2 LTR ERVK 1 445 -461 2 731 186 43 0 0 chr6 19160150 19160173 -130356864 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 731 3567 127 228 35 chr6 19160173 19160543 -130356494 + RMER17A2 LTR ERVK 446 905 -1 2 731 6547 127 24 14 chr6 19160543 19160637 -130356400 + Lx LINE L1 6534 6631 -23 2 731 24 77 0 0 chr6 19161280 19161332 -130355705 + AT_rich Low_complexity Low_complexity 1 52 0 2 731 202 79 46 31 chr6 19161916 19161981 -130355056 + A-rich Low_complexity Low_complexity 5 70 0 2 731 29 70 0 0 chr6 19162154 19162211 -130354826 + AT_rich Low_complexity Low_complexity 1 57 0 2 731 7011 134 21 1 chr6 19162260 19163640 -130353397 + Lx LINE L1 5234 6647 -7 2 731 203 0 0 36 chr6 19163652 19163680 -130353357 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 731 306 0 0 0 chr6 19163884 19163918 -130353119 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 2 731 946 152 11 0 chr6 19163920 19164097 -130352940 + CT-rich Low_complexity Low_complexity 2 180 0 2 731 213 121 0 0 chr6 19164092 19164125 -130352912 + (T)n Simple_repeat Simple_repeat 1 33 0 2 731 1010 101 7 0 chr6 19164129 19164268 -130352769 - B1_Mus1 SINE Alu -7 141 2 2 731 487 333 103 33 chr6 19164700 19164973 -130352064 - L2 LINE L2 -453 2966 2675 2 731 441 0 0 0 chr6 19165650 19165699 -130351338 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 731 462 197 0 0 chr6 19166161 19166283 -130350754 + (CA)n Simple_repeat Simple_repeat 2 123 0 2 731 210 136 0 0 chr6 19166285 19166329 -130350708 + (CAGAGA)n Simple_repeat Simple_repeat 4 47 0 2 731 35109 83 5 8 chr6 19166374 19172674 -130344363 - L1Md_F2 LINE L1 -14 6568 281 2 731 200 111 28 0 chr6 19173014 19173050 -130343987 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 731 340 92 0 44 chr6 19173050 19173118 -130343919 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2 731 621 100 0 0 chr6 19173265 19173355 -130343682 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 2 731 291 34 371 48 chr6 19173355 19173417 -130343620 - MTA_Mm LTR MaLR -162 234 153 2 731 4688 124 18 25 chr6 19173420 19175034 -130342003 + L1Md_F LINE L1 249 1845 -4038 2 731 1108 288 27 38 chr6 19175031 19175402 -130341635 - Lx5 LINE L1 -569 6891 6450 2 731 239 125 0 0 chr6 19176154 19176194 -130340843 - Lx4B LINE L1 -915 6143 6104 2 731 961 248 10 5 chr6 19176190 19176393 -130340644 + Lx4B LINE L1 6143 6346 -712 2 731 369 0 0 0 chr6 19176394 19176435 -130340602 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 731 1432 17 6 6 chr6 19176435 19176611 -130340426 + (TTC)n Simple_repeat Simple_repeat 1 176 0 2 731 7551 163 35 45 chr6 19176611 19178730 -130338307 - Lx2B LINE L1 -32 6968 4861 2 731 2993 213 41 35 chr6 19178736 19179450 -130337587 + Lx4B LINE L1 6337 7054 -4 2 731 32 67 0 0 chr6 19180432 19180492 -130336545 + AT_rich Low_complexity Low_complexity 1 60 0 2 731 50 18 0 0 chr6 19180657 19180714 -130336323 + AT_rich Low_complexity Low_complexity 1 57 0 2 731 267 303 0 0 chr6 19181536 19181612 -130335425 - MTEb LTR MaLR -1 378 303 2 731 229 331 136 38 chr6 19182046 19182310 -130334727 + L2 LINE L2 1661 1950 -1469 2 731 198 103 0 0 chr6 19182310 19182339 -130334698 + (TCC)n Simple_repeat Simple_repeat 2 30 0 2 731 977 17 8 0 chr6 19183392 19183511 -130333526 + (TTC)n Simple_repeat Simple_repeat 3 122 0 2 731 2626 201 58 89 chr6 19185224 19185689 -130331348 - RMER13B LTR ERVK 0 908 415 2 731 4495 62 3 0 chr6 19185689 19186266 -130330771 + L1_Mus1 LINE L1 5988 6566 -1 2 731 1089 131 0 0 chr6 19186274 19186450 -130330587 + (GGA)n Simple_repeat Simple_repeat 3 178 0 2 731 1165 0 0 130 chr6 19186454 19186661 -130330376 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 731 1188 58 7 0 chr6 19186664 19186818 -130330219 + L1_Mus2 LINE L1 6412 6566 0 2 731 2626 201 58 89 chr6 19186818 19187054 -130329983 - RMER13B LTR ERVK -497 411 211 2 731 467 281 84 20 chr6 19187363 19187566 -130329471 - B3 SINE B2 0 216 1 2 731 411 56 0 0 chr6 19188470 19188524 -130328513 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 2 731 306 322 157 86 chr6 19189116 19189384 -130327653 - MLT1A1 LTR MaLR 0 408 79 2 731 1162 141 43 120 chr6 19189389 19189496 -130327541 - RLTR31_Mm LTR ERVK -202 359 278 2 731 3974 59 0 4 chr6 19189496 19189992 -130327045 - L1Md_F2 LINE L1 -14 6568 6075 2 731 1162 141 43 120 chr6 19189992 19190142 -130326895 - RLTR31_Mm LTR ERVK -284 277 122 2 731 2818 72 3 3 chr6 19190235 19190610 -130326427 - L1_Mus2 LINE L1 -2 6564 6190 2 731 4118 58 31 0 chr6 19190611 19191150 -130325887 + L1_Mus2 LINE L1 5612 6167 -399 2 731 21 36 0 0 chr6 19191661 19191689 -130325348 + AT_rich Low_complexity Low_complexity 1 28 0 2 731 26 50 0 0 chr6 19191915 19191955 -130325082 + AT_rich Low_complexity Low_complexity 1 40 0 2 731 1334 233 41 3 chr6 19191981 19192274 -130324763 + ORR1B2 LTR MaLR 64 367 0 2 731 1951 188 40 62 chr6 19192289 19192671 -130324366 + ORR1B2-int LTR MaLR 42 399 -1110 2 731 534 31 0 0 chr6 19192671 19192735 -130324302 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 731 1951 188 40 62 chr6 19192735 19192800 -130324237 + ORR1B2-int LTR MaLR 400 478 -1031 2 731 3023 189 16 3 chr6 19192832 19193124 -130323913 + Lx2A1 LINE L1 5306 5597 -289 2 731 2557 184 76 8 chr6 19193124 19193215 -130323822 + RLTR31_Mm LTR ERVK 1 94 -467 2 731 207 69 0 0 chr6 19193215 19193244 -130323793 + (CAGAGA)n Simple_repeat Simple_repeat 1 29 0 2 731 2557 184 76 8 chr6 19193244 19193677 -130323360 + RLTR31_Mm LTR ERVK 95 560 -1 2 731 4576 127 14 4 chr6 19193677 19194381 -130322656 + Lx2A1 LINE L1 5598 6304 -704 2 731 2549 165 47 22 chr6 19194381 19194870 -130322167 + Lx2A1 LINE L1 6508 7008 0 2 731 3459 212 55 12 chr6 19194872 19195701 -130321336 + ORR1B2-int LTR MaLR 514 1378 -131 2 731 2119 264 7 2 chr6 19195715 19196167 -130320870 - Lx5 LINE L1 -162 6888 6435 2 731 3303 213 78 1 chr6 19196182 19196935 -130320102 + Lx5 LINE L1 5600 6410 -640 2 731 650 174 16 18 chr6 19196937 19197060 -130319977 + ORR1B2-int LTR MaLR 1389 1529 -51 2 731 234 182 23 0 chr6 19197060 19197104 -130319933 + ORR1B2 LTR MaLR 3 47 -320 2 731 1175 270 122 3 chr6 19198424 19198784 -130318253 + Lx6 LINE L1 7032 7434 -26 2 731 1851 214 38 18 chr6 19198986 19199386 -130317651 + MTC LTR MaLR 6 413 -8 2 731 612 40 0 0 chr6 19199749 19199824 -130317213 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 731 234 0 0 0 chr6 19199824 19199849 -130317188 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 731 319 337 128 0 chr6 19200002 19200088 -130316949 - B4 SINE B4 -110 182 86 2 731 717 309 70 30 chr6 19200283 19200452 -130316585 + ORR1E LTR MaLR 30 199 -160 2 731 4808 60 8 24 chr6 19200452 19201080 -130315957 + L1Md_F2 LINE L1 5954 6571 -11 2 731 717 309 70 30 chr6 19201080 19201180 -130315857 + ORR1E LTR MaLR 200 310 -49 2 731 291 292 30 8 chr6 19202564 19202695 -130314342 - L1MA6 LINE L1 -17 6283 6150 2 731 3121 191 85 3 chr6 19203089 19203710 -130313327 + Lx3C LINE L1 6300 6971 -5 2 731 16644 60 5 1 chr6 19204144 19206961 -130310076 - L1Md_F2 LINE L1 -12 6570 3746 2 731 5622 96 15 0 chr6 19207266 19208067 -130308970 - L1_Mm LINE L1 -317 5566 4754 2 731 3432 64 0 0 chr6 19208089 19208524 -130308513 + L1_Mus1 LINE L1 5587 6021 -546 2 731 2100 131 128 21 chr6 19208542 19208931 -130308106 - RLTR44E LTR ERVK -20 432 2 2 731 4429 63 0 0 chr6 19208931 19209490 -130307547 + L1_Mus1 LINE L1 6008 6566 -1 2 731 12913 183 10 42 chr6 19209612 19212374 -130304663 - L1_Mm LINE L1 -194 5689 3016 2 731 264 59 0 0 chr6 19212479 19212513 -130304524 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2 731 319 239 0 0 chr6 19212514 19212581 -130304456 + Lx7 LINE L1 7557 7623 -73 2 731 398 395 33 41 chr6 19215148 19215391 -130301646 - B4A SINE B4 -20 272 32 2 731 2036 189 39 39 chr6 19215678 19216163 -130300874 - RMER6C LTR ERVK -205 485 1 2 731 210 150 0 0 chr6 19216947 19216987 -130300050 + (CAA)n Simple_repeat Simple_repeat 3 42 0 2 731 214 246 0 30 chr6 19216994 19217061 -130299976 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 3 731 23 33 0 0 chr6 19217798 19217828 -130299209 + AT_rich Low_complexity Low_complexity 1 30 0 3 731 1123 83 0 0 chr6 19217868 19218013 -130299024 + B1_Mus1 SINE Alu 2 146 -2 3 731 231 36 0 0 chr6 19218015 19218043 -130298994 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 731 405 0 0 0 chr6 19218631 19218676 -130298361 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 731 915 60 0 0 chr6 19219863 19219980 -130297057 - Lx3A LINE L1 -333 6648 6532 3 731 2536 114 5 15 chr6 19220117 19220519 -130296518 + Lx2 LINE L1 6599 6996 -1 3 731 2744 147 0 5 chr6 19220677 19221122 -130295915 - L1_Mm LINE L1 -155 5728 5286 3 731 4604 100 5 0 chr6 19221139 19221787 -130295250 - L1_Mus1 LINE L1 0 6567 5917 3 731 1263 139 5 0 chr6 19221812 19222014 -130295023 - L1_Mm LINE L1 -991 4892 4690 3 731 5144 142 42 5 chr6 19222014 19222892 -130294145 + Lx LINE L1 5743 6653 -1 3 731 480 324 7 14 chr6 19224610 19224748 -130292289 + B1_Mm SINE Alu 3 139 -8 3 731 255 31 0 0 chr6 19224941 19224973 -130292064 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 3 731 248 238 262 0 chr6 19225097 19225204 -130291833 + MT2A LTR ERVL 399 533 0 3 731 3305 54 9 25 chr6 19226070 19226507 -130290530 + L1Md_F3 LINE L1 6149 6578 -6 3 731 309 304 61 10 chr6 19226509 19226705 -130290332 + L1MB5 LINE L1 4751 4956 -1190 3 731 508 302 223 41 chr6 19226736 19226978 -130290059 + B4 SINE B4 4 289 -3 3 731 402 149 0 0 chr6 19227002 19227076 -130289961 - RMER1C Other Other -3 1339 1266 3 731 275 314 20 40 chr6 19227098 19227297 -130289740 + L1MB5 LINE L1 5759 5953 -221 3 731 749 74 24 8 chr6 19227709 19227832 -130289205 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 3 731 869 326 20 46 chr6 19228485 19228835 -130288202 - MTE2a LTR MaLR 0 379 39 3 731 675 0 0 0 chr6 19229090 19229165 -130287872 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 731 3665 193 59 11 chr6 19229618 19230470 -130286567 + L1_Mur3 LINE L1 4962 5854 -26 3 731 1356 284 48 58 chr6 19230484 19230905 -130286132 + Lx6 LINE L1 6798 7196 -264 3 731 378 0 0 0 chr6 19230905 19230947 -130286090 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 731 1356 284 48 58 chr6 19230947 19231130 -130285907 + Lx6 LINE L1 7197 7396 -64 3 731 521 204 24 0 chr6 19231145 19231312 -130285725 + GA-rich Low_complexity Low_complexity 1 171 0 3 731 6160 89 52 3 chr6 19231398 19232342 -130284695 - L1_Mus3 LINE L1 0 6638 5649 3 731 272 158 18 0 chr6 19232670 19232727 -130284310 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 731 234 0 0 0 chr6 19233333 19233359 -130283678 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 731 21 0 0 0 chr6 19233795 19233816 -130283221 + AT_rich Low_complexity Low_complexity 1 21 0 3 731 306 67 0 0 chr6 19236504 19236549 -130280488 + (T)n Simple_repeat Simple_repeat 1 45 0 3 731 396 250 68 0 chr6 19237079 19237167 -130279870 + B1_Mur1 SINE Alu 43 136 -13 3 731 264 30 0 0 chr6 19239114 19239147 -130277890 + (A)n Simple_repeat Simple_repeat 1 33 0 3 731 1270 270 34 62 chr6 19239976 19240185 -130276852 - Lx6 LINE L1 -2 7458 7249 3 731 3477 98 0 10 chr6 19240185 19240671 -130276366 - L1Md_F2 LINE L1 0 6582 6102 3 731 1270 270 34 62 chr6 19240671 19240927 -130276110 - Lx6 LINE L1 -212 7248 7007 3 731 186 43 0 0 chr6 19241541 19241564 -130275473 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 731 3335 95 6 6 chr6 19242082 19242557 -130274480 + MT2C_Mm LTR ERVL 1 475 0 3 731 21 0 0 0 chr6 19243377 19243398 -130273639 + AT_rich Low_complexity Low_complexity 1 21 0 3 731 1793 75 20 0 chr6 19243405 19243659 -130273378 - L1_Mus3 LINE L1 -7 6631 6373 3 731 928 64 99 0 chr6 19243659 19243800 -130273237 - L1_Mus3 LINE L1 -601 6037 5883 3 731 283 298 156 45 chr6 19243984 19244163 -130272874 - MLT1C LTR MaLR -8 497 299 3 731 1155 101 84 0 chr6 19244282 19244460 -130272577 - B2_Mm2 SINE B2 -2 193 1 3 731 2267 300 70 15 chr6 19246084 19247128 -130269909 - Lx5 LINE L1 -20 7440 5915 3 731 3745 112 16 1 chr6 19247174 19247882 -130269155 + Lx2 LINE L1 5237 5951 -1046 3 731 3392 136 23 17 chr6 19247881 19248485 -130268552 + Lx2 LINE L1 5891 6498 -499 3 731 491 180 11 0 chr6 19248526 19248615 -130268422 - Lx2 LINE L1 -143 6854 6765 3 731 930 180 0 0 chr6 19248604 19248765 -130268272 - Lx2 LINE L1 -352 6645 6485 3 731 3468 144 3 5 chr6 19248759 19249353 -130267684 + Lx2 LINE L1 5903 6495 -502 3 731 1930 201 42 54 chr6 19249375 19249963 -130267074 - L1_Mur2 LINE L1 -2057 3820 3240 3 731 2496 226 64 20 chr6 19249934 19250013 -130267024 - Lx2B LINE L1 -3 6997 6921 3 731 6446 60 11 0 chr6 19250013 19250812 -130266225 - RLTR13C2 LTR ERVK 0 808 1 3 731 2496 226 64 20 chr6 19250812 19251419 -130265618 - Lx2B LINE L1 -80 6920 6281 3 731 7797 159 35 65 chr6 19251417 19252566 -130264471 + Lx2B LINE L1 4133 5229 -648 3 731 378 0 0 0 chr6 19252566 19252608 -130264429 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 3 731 7797 165 38 43 chr6 19252608 19253603 -130263434 + Lx2B LINE L1 5230 6246 -754 3 731 1826 168 10 2 chr6 19253611 19254010 -130263027 - L1_Mur2 LINE L1 -2610 3267 2866 3 731 247 160 19 57 chr6 19254049 19254102 -130262935 - MER65D LTR ERV1 -411 62 12 3 731 272 207 0 0 chr6 19254102 19254160 -130262877 - L1_Mur2 LINE L1 -3152 2728 2671 3 731 1072 236 53 25 chr6 19254259 19254655 -130262382 - Lx5 LINE L1 -852 6198 5792 3 731 365 236 0 0 chr6 19254635 19254739 -130262298 + L1_Mur2 LINE L1 5120 5217 -660 3 731 2094 234 67 28 chr6 19254754 19255181 -130261856 + RMER4B LTR ERVK 24 457 -128 3 731 651 13 0 0 chr6 19255181 19255257 -130261780 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 731 2094 234 67 28 chr6 19255257 19255370 -130261667 + RMER4B LTR ERVK 458 584 -1 3 731 1350 18 0 0 chr6 19255370 19255534 -130261503 - L1Md_T LINE L1 -208 6374 6211 3 731 1262 76 0 0 chr6 19255534 19255705 -130261332 + L1Md_T LINE L1 6412 6582 0 3 731 2194 206 51 9 chr6 19255722 19256271 -130260766 + Lx5 LINE L1 5218 5789 -88 3 731 2785 170 70 45 chr6 19256255 19256796 -130260241 + Lx4A LINE L1 6403 6961 -97 3 731 3411 25 5 0 chr6 19256796 19257190 -130259847 + MTA_Mm LTR MaLR 1 396 0 3 731 2785 170 70 45 chr6 19257190 19257288 -130259749 + Lx4A LINE L1 6962 7058 0 3 731 2141 206 59 55 chr6 19257330 19257889 -130259148 + Lx5 LINE L1 5783 6343 -707 3 731 1746 116 77 61 chr6 19257901 19258213 -130258824 - ORR1A2 LTR MaLR -8 319 3 3 731 2977 238 23 12 chr6 19258214 19258866 -130258171 + Lx5 LINE L1 6351 7009 -41 3 731 967 235 73 32 chr6 19258917 19259572 -130257465 - L1_Mur2 LINE L1 -4360 1517 892 3 731 22520 66 157 6 chr6 19259717 19265042 -130251995 - L1Md_F2 LINE L1 0 6585 287 3 91 5769 53 3 35 chr6 19267341 19268106 -130248931 - L1Md_F2 LINE L1 0 6582 5843 3 732 207 0 0 0 chr6 19269134 19269157 -130247880 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 732 1856 102 31 22 chr6 19270000 19270319 -130246718 - RLTRETN_Mm LTR ERVK 0 322 1 3 732 17162 150 31 19 chr6 19270319 19277085 -130239952 - ETnERV2-int LTR ERVK -282 7124 34 3 732 1752 109 33 23 chr6 19277085 19277405 -130239632 - RLTRETN_Mm LTR ERVK -7 386 1 3 732 1058 61 0 0 chr6 19277617 19277749 -130239288 + L1_Mus3 LINE L1 6156 6287 -351 3 732 1125 102 61 0 chr6 19277756 19277933 -130239104 - L1_Mus3 LINE L1 -816 5822 5649 3 732 1567 114 12 4 chr6 19278244 19278491 -130238546 + L1_Mus3 LINE L1 6388 6636 -2 3 732 441 0 0 0 chr6 19279617 19279666 -130237371 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 732 6032 41 3 0 chr6 19279971 19280707 -130236330 + L1Md_F2 LINE L1 5833 6570 -12 3 732 531 316 54 44 chr6 19280843 19281048 -130235989 - B3 SINE B2 -1 215 9 3 732 22 35 0 0 chr6 19281989 19282018 -130235019 + AT_rich Low_complexity Low_complexity 1 29 0 3 732 369 358 60 13 chr6 19282178 19282328 -130234709 - RSINE1 SINE B4 0 165 9 3 732 58 60 0 0 chr6 19282546 19282646 -130234391 + AT_rich Low_complexity Low_complexity 1 100 0 3 732 21 82 0 0 chr6 19282704 19282753 -130234284 + AT_rich Low_complexity Low_complexity 1 49 0 3 732 3119 123 6 19 chr6 19282753 19283235 -130233802 - Lx3A LINE L1 -2 6979 6504 3 732 6219 144 28 16 chr6 19283241 19284902 -130232135 - Lx3A LINE L1 -5 6995 5307 3 732 517 313 23 103 chr6 19284884 19285233 -130231804 - Lx9 LINE L1 -424 7220 6900 3 732 1104 79 0 0 chr6 19285241 19285381 -130231656 + B1_Mus2 SINE Alu 2 141 -6 3 732 216 0 0 0 chr6 19285384 19285408 -130231629 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 732 351 0 0 0 chr6 19285448 19285487 -130231550 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 732 846 112 0 8 chr6 19285487 19285613 -130231424 - B1_Mus1 SINE Alu -23 125 1 3 732 229 229 83 8 chr6 19285505 19285637 -130231400 - ORR1B1-int LTR MaLR -756 753 612 3 732 1980 157 23 42 chr6 19285638 19286024 -130231013 - Lx3C LINE L1 -2 6974 6596 3 732 21 71 0 0 chr6 19286030 19286072 -130230965 + AT_rich Low_complexity Low_complexity 1 42 0 3 732 405 0 0 0 chr6 19286801 19286846 -130230191 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 732 231 185 11 69 chr6 19287293 19287380 -130229657 + T-rich Low_complexity Low_complexity 2 83 0 3 732 571 320 59 15 chr6 19289008 19289211 -130227826 - MER47B DNA MER2_type -174 244 33 3 732 21 57 0 0 chr6 19289495 19289530 -130227507 + AT_rich Low_complexity Low_complexity 1 35 0 3 732 525 312 59 10 chr6 19291370 19291574 -130225463 - 7SK RNA RNA -89 242 29 3 732 481 306 13 0 chr6 19291935 19292092 -130224945 - B3A SINE B2 -18 180 22 3 732 423 0 0 0 chr6 19292244 19292291 -130224746 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 732 6853 123 22 7 chr6 19292294 19293366 -130223671 - Lx LINE L1 -12 6642 5584 3 732 25 51 0 0 chr6 19293932 19293971 -130223066 + AT_rich Low_complexity Low_complexity 1 39 0 3 732 230 56 28 0 chr6 19294154 19294190 -130222847 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 732 950 74 0 36 chr6 19294190 19294330 -130222707 - L1_Mus1 LINE L1 -15 6552 6418 3 732 398 231 83 15 chr6 19296160 19296292 -130220745 - Lx5 LINE L1 0 7050 6910 3 732 360 0 0 0 chr6 19296448 19296488 -130220549 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 732 753 239 123 16 chr6 19297044 19297295 -130219742 - Lx2B LINE L1 -1 6999 6722 3 732 677 312 58 29 chr6 19298502 19298659 -130218378 + Lx9 LINE L1 6443 6613 -1031 3 732 800 76 0 0 chr6 19298659 19298778 -130218259 - L1Md_F2 LINE L1 -12 6570 6452 3 732 677 312 58 29 chr6 19298778 19298861 -130218176 + Lx9 LINE L1 6614 6689 -955 3 732 302 237 26 13 chr6 19298861 19298938 -130218099 + RLTR20B3 LTR ERVK 1 78 -482 3 732 632 238 89 38 chr6 19298926 19298988 -130218049 + RLTR20B3 LTR ERVK 409 484 -93 3 732 423 0 0 0 chr6 19298988 19299035 -130218002 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 732 632 238 89 38 chr6 19299035 19299129 -130217908 + RLTR20B3 LTR ERVK 485 573 -4 3 732 679 275 6 6 chr6 19299143 19299315 -130217722 + Lx9 LINE L1 6697 6868 -776 3 732 444 37 0 0 chr6 19299364 19299418 -130217619 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 732 464 69 28 0 chr6 19300330 19300402 -130216635 + (TAAAA)n Simple_repeat Simple_repeat 3 76 0 4 732 202 211 19 0 chr6 19300551 19300570 -130216467 + A-rich Low_complexity Low_complexity 3 22 0 4 732 1147 62 14 0 chr6 19300570 19300715 -130216322 + B1_Mm SINE Alu 1 147 0 4 732 202 211 19 0 chr6 19300715 19300747 -130216290 + A-rich Low_complexity Low_complexity 23 54 0 4 732 237 65 0 0 chr6 19300751 19300782 -130216255 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 732 375 245 28 19 chr6 19301906 19302014 -130215023 - PB1D10 SINE Alu -7 110 2 4 732 29 47 0 0 chr6 19302127 19302170 -130214867 + AT_rich Low_complexity Low_complexity 1 43 0 4 732 21 36 0 0 chr6 19302406 19302434 -130214603 + AT_rich Low_complexity Low_complexity 1 28 0 4 732 261 0 0 0 chr6 19302812 19302841 -130214196 + (T)n Simple_repeat Simple_repeat 1 29 0 4 732 3716 69 0 12 chr6 19302935 19303436 -130213601 - L1Md_F2 LINE L1 -1 6581 6087 4 732 6833 72 1 4 chr6 19304134 19305035 -130212002 + L1Md_F2 LINE L1 4689 5586 -297 4 732 7473 71 5 9 chr6 19305035 19306033 -130211004 + L1Md_F2 LINE L1 5587 6580 -2 4 732 23 33 0 0 chr6 19307907 19307937 -130209100 + AT_rich Low_complexity Low_complexity 1 30 0 4 732 324 307 36 0 chr6 19307954 19308091 -130208946 + (CATA)n Simple_repeat Simple_repeat 3 144 0 4 732 4701 102 16 42 chr6 19308308 19309075 -130207962 - RMER17A LTR ERVK 0 751 5 4 732 355 372 68 7 chr6 19309466 19309612 -130207425 + RSINE1 SINE B4 11 165 0 4 732 549 30 0 0 chr6 19309626 19309693 -130207344 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 732 348 24 0 0 chr6 19309693 19309734 -130207303 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 732 658 281 72 27 chr6 19310732 19310955 -130206082 - MTEa LTR MaLR -3 376 144 4 732 348 317 39 0 chr6 19311093 19311155 -130205882 - MTEa LTR MaLR -268 111 50 4 732 4869 103 3 10 chr6 19311155 19311864 -130205173 - L1_Mus1 LINE L1 0 6567 5864 4 732 348 317 39 0 chr6 19311864 19311905 -130205132 - MTEa LTR MaLR -330 49 5 4 732 281 229 0 41 chr6 19311916 19311990 -130205047 + L1MA9 LINE L1 5834 5904 -260 4 732 616 302 84 42 chr6 19313158 19313587 -130203450 - LTR73 LTR ERV1 -108 464 18 4 732 25 0 0 0 chr6 19314426 19314451 -130202586 + AT_rich Low_complexity Low_complexity 1 25 0 4 732 337 291 63 19 chr6 19315628 19315752 -130201285 - MTC LTR MaLR -89 311 176 4 732 1368 259 93 14 chr6 19315752 19316276 -130200761 - Lx6 LINE L1 -7 7689 6866 4 732 1108 150 10 45 chr6 19317126 19317328 -130199709 - Lx3C LINE L1 -33 6943 6749 4 732 3854 165 72 9 chr6 19317344 19318083 -130198954 - Lx2A1 LINE L1 0 7008 6224 4 732 2555 171 28 56 chr6 19318844 19319309 -130197728 - RLTR31A_Mm LTR ERVK 0 584 86 4 732 2488 88 9 0 chr6 19319309 19319650 -130197387 - L1_Mus1 LINE L1 -3 6564 6221 4 732 2555 167 27 50 chr6 19319650 19319728 -130197309 - RLTR31A_Mm LTR ERVK -499 85 9 4 732 541 266 221 18 chr6 19320012 19320238 -130196799 + MTD LTR MaLR 134 405 -14 4 732 21 0 0 0 chr6 19320887 19320908 -130196129 + AT_rich Low_complexity Low_complexity 1 21 0 4 732 459 217 60 39 chr6 19322051 19322233 -130194804 - Lx9 LINE L1 -1 7643 7458 4 732 773 238 50 54 chr6 19322220 19322518 -130194519 - Lx9 LINE L1 -130 7514 7218 4 732 260 220 0 20 chr6 19324246 19324297 -130192740 - MLT1E1 LTR MaLR -201 453 404 4 732 729 176 0 0 chr6 19324373 19324515 -130192522 + G-rich Low_complexity Low_complexity 5 146 0 4 732 363 97 48 0 chr6 19324515 19324577 -130192460 + (GAGAA)n Simple_repeat Simple_repeat 5 69 0 4 732 696 309 103 38 chr6 19326233 19326314 -130190723 + L1MB8 LINE L1 5271 5352 -826 4 732 1153 75 0 0 chr6 19326314 19326461 -130190576 + B1_Mm SINE Alu 1 147 0 4 732 510 17 0 0 chr6 19326461 19326520 -130190517 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 732 696 309 103 38 chr6 19326520 19327119 -130189918 + L1MB8 LINE L1 5353 5995 -183 4 732 210 71 0 0 chr6 19328669 19328697 -130188340 + (A)n Simple_repeat Simple_repeat 1 28 0 4 732 235 221 26 13 chr6 19328747 19328825 -130188212 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 732 803 355 30 47 chr6 19328825 19329292 -130187745 - MT2A LTR ERVL -74 459 1 4 732 2918 274 40 82 chr6 19329489 19330403 -130186634 + RMER1C Other Other 464 1339 -3 4 732 242 346 22 30 chr6 19331080 19331214 -130185823 - MamGypLTR2b LTR Gypsy -71 851 719 4 732 2053 109 68 144 chr6 19331617 19332131 -130184906 + IAPLTR2_Mm LTR ERVK 1 475 0 4 732 488 131 162 0 chr6 19332132 19332231 -130184806 + IAPEz-int LTR ERVK 9 123 -6358 4 732 227 267 0 0 chr6 19332231 19332276 -130184761 + RLTR27 LTR ERVK 231 275 -34 4 732 3382 64 22 16 chr6 19332276 19332842 -130184195 + IAPEz-int LTR ERVK 168 662 -5819 4 732 2136 83 0 0 chr6 19332842 19333120 -130183917 + IAPEz-int LTR ERVK 1359 1636 -4845 4 732 5096 42 5 0 chr6 19333119 19333733 -130183304 + IAPEz-int LTR ERVK 5736 6352 -129 4 732 181 216 38 38 chr6 19333985 19334038 -130182999 - MIR SINE MIR -112 150 98 4 732 28281 88 6 99 chr6 19334739 19338598 -130178439 - L1Md_F2 LINE L1 0 6582 3402 4 732 7649 52 12 6 chr6 19338598 19339575 -130177462 + L1Md_F3 LINE L1 5588 6570 -14 4 732 28281 100 25 97 chr6 19339575 19342545 -130174492 - L1Md_F2 LINE L1 -2482 3401 359 4 732 342 280 39 20 chr6 19342863 19342965 -130174072 + MTE2a LTR MaLR 267 370 -9 4 732 9481 114 41 2 chr6 19343295 19344793 -130172244 - L1_Mus1 LINE L1 -484 5399 3844 4 732 7183 93 8 6 chr6 19344792 19345905 -130171132 + L1_Mus1 LINE L1 5453 6567 0 4 732 245 295 74 28 chr6 19346509 19346521 -130170516 - RLTR22_Mur LTR ERVK -429 1419 1409 4 732 327 85 0 0 chr6 19346521 19346568 -130170469 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 732 245 295 74 28 chr6 19346568 19346663 -130170374 - RLTR22_Mur LTR ERVK -440 1408 1307 4 732 456 67 0 0 chr6 19346663 19346723 -130170314 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 732 2867 38 0 0 chr6 19347737 19348076 -130168961 + L1Md_F2 LINE L1 6229 6567 -15 4 732 2385 141 24 7 chr6 19348841 19349256 -130167781 - Lx2 LINE L1 -1 6996 6575 4 732 1310 239 68 16 chr6 19349411 19349776 -130167261 + ORR1C2 LTR MaLR 1 384 0 4 732 300 314 69 28 chr6 19350165 19350381 -130166656 + Arthur1 DNA Tip100 3416 3640 -307 4 732 34406 88 3 5 chr6 19350499 19356657 -130160380 - L1Md_F2 LINE L1 -12 6570 446 4 732 27 0 0 0 chr6 19356873 19356900 -130160137 + AT_rich Low_complexity Low_complexity 1 27 0 4 732 3963 82 66 14 chr6 19357060 19357502 -130159535 - L1_Mus2 LINE L1 -356 6210 5735 4 732 3405 23 5 0 chr6 19357502 19357896 -130159141 - MTA_Mm LTR MaLR 0 396 1 4 732 3963 101 26 13 chr6 19357896 19358339 -130158698 - L1_Mus2 LINE L1 -149 5734 5294 4 732 22 0 0 0 chr6 19358561 19358583 -130158454 + AT_rich Low_complexity Low_complexity 1 22 0 4 732 395 317 94 82 chr6 19359299 19359639 -130157398 + ORR1E LTR MaLR 6 349 -10 4 732 2159 115 189 6 chr6 19361497 19361863 -130155174 + RLTR10C LTR ERVK 1 433 -3 4 732 327 49 0 0 chr6 19361916 19361957 -130155080 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 4 732 3370 188 69 19 chr6 19361957 19362623 -130154414 - Lx4A LINE L1 -16 7042 6344 4 732 23 0 0 0 chr6 19362628 19362651 -130154386 + AT_rich Low_complexity Low_complexity 1 23 0 4 732 272 275 0 21 chr6 19363030 19363123 -130153914 - L1MA5 LINE L1 -34 6266 6176 4 732 5788 96 10 18 chr6 19363115 19364613 -130152424 + L1_Mus1 LINE L1 5129 6582 0 4 732 24 0 0 0 chr6 19364622 19364646 -130152391 + AT_rich Low_complexity Low_complexity 1 24 0 4 732 266 282 115 0 chr6 19364745 19364823 -130152214 - B1_Mus1 SINE Alu -61 87 1 4 732 495 0 0 0 chr6 19364845 19364900 -130152137 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 732 632 297 12 0 chr6 19365049 19365214 -130151823 - Lx8 LINE L1 -212 7261 7095 4 732 499 310 23 76 chr6 19365361 19365623 -130151414 + RLTR26 LTR ERVK 170 417 -225 4 732 722 300 51 25 chr6 19365931 19366205 -130150832 - Lx8 LINE L1 -425 7048 6768 4 732 528 318 20 7 chr6 19366195 19366347 -130150690 - Lx8 LINE L1 -203 7270 7117 4 732 1082 239 80 28 chr6 19366354 19366566 -130150471 + Lx7 LINE L1 7363 7542 -154 4 732 752 50 10 0 chr6 19366566 19366667 -130150370 + (CATAT)n Simple_repeat Simple_repeat 2 103 0 4 732 1082 218 99 32 chr6 19366667 19366816 -130150221 + Lx7 LINE L1 7543 7696 0 4 732 1032 299 42 26 chr6 19366834 19367215 -130149822 - Lx8 LINE L1 -360 7113 6727 4 732 391 128 13 79 chr6 19367357 19367447 -130149590 + ORR1A4 LTR MaLR 1 98 -296 4 732 971 291 63 23 chr6 19367440 19367743 -130149294 - MTD LTR MaLR -104 315 1 4 732 312 329 101 32 chr6 19368017 19368265 -130148772 + L1M4 LINE L1 5392 5656 -528 4 732 202 29 57 0 chr6 19368598 19368633 -130148404 + (CAA)n Simple_repeat Simple_repeat 2 38 0 4 732 238 302 0 40 chr6 19368635 19368735 -130148302 + L1M1 LINE L1 5648 5743 -557 4 732 33 66 0 0 chr6 19369784 19369845 -130147192 + AT_rich Low_complexity Low_complexity 1 61 0 4 732 3800 176 75 34 chr6 19370314 19371172 -130145865 + RLTR13B1 LTR ERVK 1 893 0 4 732 234 242 35 161 chr6 19371462 19371605 -130145432 - MLT1F-int LTR MaLR -718 771 647 4 732 7419 10 2 0 chr6 19371927 19372747 -130144290 + RLTR13B2 LTR ERVK 1 822 0 4 732 359 114 14 14 chr6 19372749 19372820 -130144217 + ETnERV3-int LTR ERVK 3 73 -5735 4 732 9573 114 42 18 chr6 19372823 19374355 -130142682 + ETnERV3-int LTR ERVK 4214 5782 -26 4 732 7344 15 2 0 chr6 19374367 19375187 -130141850 + RLTR13B2 LTR ERVK 1 822 0 4 732 443 267 0 0 chr6 19376760 19376850 -130140187 + B3 SINE B2 3 92 -124 4 732 2587 185 59 8 chr6 19376851 19377272 -130139765 + RLTR20C LTR ERVK 1 427 -107 4 732 375 98 0 0 chr6 19377272 19377333 -130139704 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 732 2587 185 59 8 chr6 19377333 19377419 -130139618 + RLTR20C LTR ERVK 428 533 -1 4 732 434 300 8 0 chr6 19377430 19377550 -130139487 + B3 SINE B2 90 210 -6 4 732 4493 26 2 2 chr6 19377823 19378358 -130138679 + L1Md_F2 LINE L1 5051 5585 -298 4 732 7815 51 9 2 chr6 19378359 19379345 -130137692 + L1Md_F2 LINE L1 5587 6579 -3 4 732 29 28 0 0 chr6 19379392 19379428 -130137609 + AT_rich Low_complexity Low_complexity 1 36 0 4 732 295 269 77 10 chr6 19379449 19379579 -130137458 - B1F2 SINE Alu -2 147 9 4 732 6358 213 104 16 chr6 19380932 19382784 -130134253 + Lx5 LINE L1 5019 7044 -6 4 732 1050 281 63 34 chr6 19382797 19383177 -130133860 + Lx6 LINE L1 5817 6207 -1253 4 732 577 258 286 1 chr6 19383209 19383505 -130133532 + Lx6 LINE L1 6485 6884 -576 4 732 392 0 0 20 chr6 19384984 19385033 -130132004 + (TAA)n Simple_repeat Simple_repeat 1 48 0 4 732 397 185 25 0 chr6 19385039 19385120 -130131917 - MT2A LTR ERVL -450 83 1 4 732 1424 202 65 6 chr6 19385319 19385658 -130131379 - RLTR15 LTR ERVK 0 359 1 4 732 21 36 0 0 chr6 19386541 19386569 -130130468 + AT_rich Low_complexity Low_complexity 1 28 0 4 732 1232 118 32 0 chr6 19388190 19388377 -130128660 + L1_Mus2 LINE L1 6369 6561 -5 4 732 308 338 23 15 chr6 19388478 19388610 -130128427 + L1MC4a LINE L1 6604 6736 -1146 5 732 864 36 0 0 chr6 19388709 19388821 -130128216 - L1Md_A LINE L1 -5411 1313 1202 5 732 3123 59 2 0 chr6 19388821 19389226 -130127811 + L1Md_F2 LINE L1 6177 6582 0 5 732 14810 196 25 47 chr6 19389588 19390130 -130126907 + Lx3A LINE L1 2419 2958 -2919 5 732 5256 61 3 27 chr6 19390130 19390833 -130126204 + L1_Mus1 LINE L1 5881 6566 -1 5 732 14810 196 25 47 chr6 19390833 19391330 -130125707 + Lx3A LINE L1 2959 3483 -2394 5 732 216 0 0 0 chr6 19391330 19391354 -130125683 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 5 732 14810 166 37 32 chr6 19391354 19394891 -130122146 + Lx3A LINE L1 3484 6977 -4 5 732 5713 210 64 32 chr6 19394915 19396220 -130120817 + Lx5 LINE L1 5702 7047 -3 5 732 22 56 0 0 chr6 19396226 19396262 -130120775 + AT_rich Low_complexity Low_complexity 1 36 0 5 732 4453 134 22 65 chr6 19397376 19398200 -130118837 - Lx LINE L1 -3 6651 5864 5 732 686 34 11 0 chr6 19398520 19398609 -130118428 + (TCTA)n Simple_repeat Simple_repeat 2 91 0 5 733 662 189 0 47 chr6 19398663 19398791 -130118246 - B2_Mm2 SINE B2 -71 124 3 5 733 299 345 69 40 chr6 19398860 19399062 -130117975 + MTE2b LTR MaLR 4 211 -210 5 733 285 75 0 0 chr6 19399064 19399104 -130117933 + (CAAG)n Simple_repeat Simple_repeat 1 40 0 5 733 381 297 32 7 chr6 19399139 19399261 -130117776 + MTE2b LTR MaLR 243 374 -5 5 733 3058 187 44 29 chr6 19400062 19400694 -130116343 - RLTR26 LTR ERVK 0 642 1 5 733 4478 125 3 0 chr6 19401139 19401810 -130115227 - L1_Mm LINE L1 -52 5831 5159 5 733 3470 106 28 17 chr6 19401816 19402086 -130114951 + L1_Mus3 LINE L1 6091 6368 -270 5 733 2873 68 29 3 chr6 19402086 19402470 -130114567 - MTA_Mm LTR MaLR 0 396 3 5 733 3470 106 28 17 chr6 19402470 19402738 -130114299 + L1_Mus3 LINE L1 6369 6635 -3 5 733 528 269 108 5 chr6 19402902 19403096 -130113941 - B3 SINE B2 0 216 3 5 733 307 355 110 80 chr6 19403132 19403469 -130113568 - ORR1E LTR MaLR -2 357 11 5 733 234 91 0 0 chr6 19403529 19403562 -130113475 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 733 428 304 54 74 chr6 19403599 19403841 -130113196 - B4A SINE B4 -55 237 1 5 733 25 0 0 0 chr6 19403985 19404010 -130113027 + AT_rich Low_complexity Low_complexity 1 25 0 5 733 225 0 0 0 chr6 19404418 19404443 -130112594 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 5 733 236 203 17 0 chr6 19404992 19405051 -130111986 + T-rich Low_complexity Low_complexity 5 64 0 5 733 2742 108 8 5 chr6 19406225 19406627 -130110410 - RLTR9D LTR ERVK 0 403 1 5 733 2390 119 157 2 chr6 19406935 19407356 -130109681 - RLTR44D LTR ERVK 0 486 1 5 733 294 73 0 0 chr6 19408135 19408176 -130108861 + (T)n Simple_repeat Simple_repeat 1 41 0 5 733 300 171 51 38 chr6 19408202 19408281 -130108756 - Lx7 LINE L1 -335 7361 7282 5 733 38351 48 2 14 chr6 19408285 19414556 -130102481 - L1Md_A LINE L1 0 6582 389 5 733 21 0 0 0 chr6 19414607 19414628 -130102409 + AT_rich Low_complexity Low_complexity 1 21 0 5 733 262 328 106 12 chr6 19414908 19415206 -130101831 + L1MA9 LINE L1 5683 6004 -296 5 733 7176 76 24 5 chr6 19415662 19416812 -130100225 - L1_Mus1 LINE L1 -2 6565 5393 5 733 1220 176 0 18 chr6 19416903 19417129 -130099908 - Lx2 LINE L1 0 6997 6776 5 733 3422 141 2 0 chr6 19417130 19417649 -130099388 - Lx2 LINE L1 -354 6643 6124 5 733 391 180 101 0 chr6 19417644 19417733 -130099304 + Lx2 LINE L1 6044 6141 -856 5 733 1235 133 28 10 chr6 19417847 19418057 -130098980 + RLTR13B1 LTR ERVK 1 209 -599 5 733 15273 42 1 2 chr6 19418057 19420556 -130096481 - L1Md_T LINE L1 -44 6538 4043 5 733 5294 81 41 7 chr6 19420556 19421342 -130095695 + RLTR13B1 LTR ERVK 106 893 0 5 733 449 129 11 0 chr6 19421969 19422062 -130094975 + (CA)n Simple_repeat Simple_repeat 2 95 0 5 733 495 0 0 0 chr6 19422062 19422117 -130094920 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 733 566 276 19 26 chr6 19422319 19422475 -130094562 + ORR1E LTR MaLR 1 155 -204 5 733 306 355 138 30 chr6 19423004 19423236 -130093801 + B4A SINE B4 35 291 -1 5 733 1261 211 252 35 chr6 19423255 19423688 -130093349 + RLTR11A2 LTR ERVK 1 527 0 5 733 838 107 21 0 chr6 19424196 19424336 -130092701 + (TTTC)n Simple_repeat Simple_repeat 1 143 0 5 733 415 202 11 33 chr6 19424337 19424429 -130092608 - B1_Mus2 SINE Alu -1 146 57 5 733 735 209 155 23 chr6 19424609 19424873 -130092164 + L1_Mur2 LINE L1 869 1167 -5919 5 733 1100 228 154 3 chr6 19424879 19425030 -130092007 + L1_Mur2 LINE L1 965 1147 -5939 5 733 1994 140 36 6 chr6 19425030 19425360 -130091677 + Lx3A LINE L1 6636 6975 -6 5 733 8729 200 39 23 chr6 19425360 19426216 -130090821 + L1_Mur2 LINE L1 1148 2048 -3829 5 733 510 61 0 0 chr6 19426216 19426282 -130090755 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 733 8729 202 57 24 chr6 19426282 19427991 -130089046 + L1_Mur2 LINE L1 2048 4010 -1876 5 733 24 0 0 0 chr6 19428091 19428115 -130088922 + AT_rich Low_complexity Low_complexity 1 24 0 5 733 273 109 0 0 chr6 19428201 19428247 -130088790 + (A)n Simple_repeat Simple_repeat 1 46 0 5 733 936 155 0 0 chr6 19428300 19428448 -130088589 - B1_Mus1 SINE Alu 0 148 1 5 733 285 51 0 0 chr6 19428582 19428621 -130088416 + (T)n Simple_repeat Simple_repeat 1 39 0 5 733 348 83 0 0 chr6 19428817 19428865 -130088172 + (T)n Simple_repeat Simple_repeat 1 48 0 5 733 24 0 0 0 chr6 19429269 19429293 -130087744 + AT_rich Low_complexity Low_complexity 1 24 0 5 733 509 64 13 0 chr6 19429955 19430033 -130087004 + (TC)n Simple_repeat Simple_repeat 2 80 0 5 733 206 220 19 57 chr6 19430333 19430439 -130086598 + CT-rich Low_complexity Low_complexity 1 102 0 5 733 26 64 0 0 chr6 19430632 19430679 -130086358 + AT_rich Low_complexity Low_complexity 1 47 0 5 733 6224 174 16 2 chr6 19431547 19432730 -130084307 + Lx4B LINE L1 4011 5209 -668 5 733 6526 215 17 26 chr6 19432733 19434170 -130082867 + Lx4B LINE L1 5634 7057 -1 5 733 511 175 26 26 chr6 19434185 19434302 -130082735 - L1_Mur3 LINE L1 -4333 1544 1428 5 733 307 213 21 11 chr6 19434307 19434402 -130082635 - Lx6 LINE L1 0 7460 7365 5 733 7344 118 10 9 chr6 19434404 19436097 -130080940 - L1_Mus3 LINE L1 -1 6637 4946 5 733 12686 130 10 6 chr6 19436096 19438267 -130078770 - L1VL4 LINE L1 -658 2901 730 5 733 502 48 82 24 chr6 19438267 19438352 -130078685 + L1Md_F2 LINE L1 6493 6582 0 5 733 2953 247 22 27 chr6 19438352 19438912 -130078125 - L1VL4 LINE L1 -5573 729 171 5 733 997 206 34 66 chr6 19438912 19439379 -130077658 - L1_Mur3 LINE L1 -4440 1437 969 5 733 204 40 0 0 chr6 19439984 19440009 -130077028 + (TA)n Simple_repeat Simple_repeat 2 26 0 5 733 2269 291 86 16 chr6 19440637 19441437 -130075600 + Lx6 LINE L1 6128 6983 -477 5 733 813 256 8 85 chr6 19441456 19441704 -130075333 + Lx6 LINE L1 7231 7459 -1 5 733 21 0 0 0 chr6 19442357 19442378 -130074659 + AT_rich Low_complexity Low_complexity 1 21 0 5 733 225 196 0 0 chr6 19442400 19442456 -130074581 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 5 733 34 24 0 0 chr6 19442783 19442824 -130074213 + AT_rich Low_complexity Low_complexity 1 41 0 5 733 4483 151 1 9 chr6 19443751 19444522 -130072515 - L1_Mus4 LINE L1 -5 6631 5867 5 733 1178 122 6 0 chr6 19444522 19444702 -130072335 + L1_Mus4 LINE L1 5720 5900 -736 5 733 252 154 0 0 chr6 19445270 19445322 -130071715 + T-rich Low_complexity Low_complexity 1 52 0 5 733 356 349 68 83 chr6 19445512 19446041 -130070996 - L1ME3A LINE L1 -226 5947 5427 5 733 223 237 0 62 chr6 19446315 19446396 -130070641 + (CATATA)n Simple_repeat Simple_repeat 6 81 0 5 733 576 91 0 0 chr6 19446397 19446485 -130070552 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 733 2967 197 82 3 chr6 19446726 19447374 -130069663 + L1_Mur2 LINE L1 5136 5834 -43 5 733 18133 98 12 49 chr6 19447377 19451029 -130066008 + L1Md_A LINE L1 218 3951 -1932 5 733 1072 205 128 36 chr6 19451029 19451333 -130065704 - IAPEY3_LTR LTR ERVK 0 332 1 5 733 1167 199 103 9 chr6 19451337 19451657 -130065380 - IAP-d-int LTR ERVK -3 6478 6129 5 733 1606 132 57 26 chr6 19451680 19452007 -130065030 - IAPEY3-int LTR ERVK -342 7338 6965 5 733 1264 131 103 47 chr6 19452010 19452243 -130064794 - IAP-d-int LTR ERVK -1290 5252 5007 5 733 364 158 0 0 chr6 19452243 19452300 -130064737 - IAP-d-int LTR ERVK -6039 503 447 5 733 291 192 58 0 chr6 19452482 19452534 -130064503 - RMER16-int LTR ERVK -983 1004 950 5 733 506 225 283 14 chr6 19452529 19452741 -130064296 - RMER16-int LTR ERVK -5475 662 394 5 733 742 201 104 0 chr6 19452717 19452871 -130064166 - RMER16-int LTR ERVK -4903 503 334 5 733 838 132 7 0 chr6 19452869 19453005 -130064032 - MMERVK10C-int LTR ERVK -6737 844 708 5 733 2906 114 2 7 chr6 19453109 19453533 -130063504 - MMERVK10C-int LTR ERVK -7159 422 1 5 733 926 218 141 49 chr6 19453533 19453837 -130063200 - IAPEY3_LTR LTR ERVK 0 332 1 5 733 11808 83 15 0 chr6 19453837 19455453 -130061584 + L1Md_F2 LINE L1 3946 5585 -298 5 733 7724 68 1 0 chr6 19455454 19456449 -130060588 + L1Md_F2 LINE L1 5587 6582 0 5 733 1502 205 6 15 chr6 19456448 19456780 -130060257 + Lx LINE L1 6323 6651 -3 5 733 4840 173 41 20 chr6 19456785 19457645 -130059392 + Lx2B LINE L1 5999 6882 -118 5 733 3265 46 5 0 chr6 19457645 19458039 -130058998 - MTA_Mm LTR MaLR 0 396 1 5 733 4840 173 41 20 chr6 19458039 19458158 -130058879 + Lx2B LINE L1 6883 6998 -2 5 733 32 67 0 0 chr6 19459705 19459765 -130057272 + AT_rich Low_complexity Low_complexity 1 60 0 5 733 318 306 0 10 chr6 19460193 19460292 -130056745 + (CACCAT)n Simple_repeat Simple_repeat 2 99 0 5 733 188 378 65 29 chr6 19460323 19460462 -130056575 - MIR SINE MIR -86 176 33 5 733 239 241 42 84 chr6 19460478 19460573 -130056464 - MARNA DNA Mariner -167 419 329 5 733 1431 180 124 23 chr6 19461550 19461971 -130055066 - RMER17C LTR ERVK -519 439 16 5 733 226 196 0 0 chr6 19461971 19462017 -130055020 + Lx6 LINE L1 7397 7442 -18 5 733 2160 84 20 40 chr6 19462012 19462026 -130055011 - L1_Mus4 LINE L1 0 6636 6624 5 733 3576 78 4 6 chr6 19462026 19462505 -130054532 - L1_Mus1 LINE L1 0 6567 6090 5 733 2160 84 20 40 chr6 19462505 19462836 -130054201 - L1_Mus4 LINE L1 -13 6623 6298 5 733 318 288 96 40 chr6 19463045 19463222 -130053815 - RLTR25B LTR ERVK 0 1028 842 5 733 392 0 21 0 chr6 19464419 19464467 -130052570 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 5 733 34 24 0 0 chr6 19464770 19464811 -130052226 + AT_rich Low_complexity Low_complexity 1 41 0 5 733 835 128 7 13 chr6 19465684 19465835 -130051202 + (TCCC)n Simple_repeat Simple_repeat 4 153 0 5 733 365 165 21 14 chr6 19465834 19465975 -130051062 + CT-rich Low_complexity Low_complexity 2 143 0 5 733 1014 84 0 7 chr6 19465981 19466125 -130050912 - B1_Mus1 SINE Alu 0 148 6 5 733 270 0 0 0 chr6 19466348 19466378 -130050659 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 733 1131 81 0 0 chr6 19466498 19466671 -130050366 + (TG)n Simple_repeat Simple_repeat 2 174 0 5 733 213 367 65 92 chr6 19466817 19466970 -130050067 - B4A SINE B4 -135 157 9 5 733 530 292 102 27 chr6 19468245 19468704 -130048333 + L1_Mur2 LINE L1 3363 3844 -2299 5 733 375 89 0 0 chr6 19469096 19469152 -130047885 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 733 422 261 151 16 chr6 19469361 19469731 -130047306 + L1_Mur2 LINE L1 4130 4549 -1594 5 733 227 257 53 79 chr6 19469791 19469867 -130047170 + RLTR47_MM LTR ERV1 84 157 -375 6 733 245 361 41 16 chr6 19469989 19470231 -130046806 + L1_Mur2 LINE L1 4809 5056 -1087 5 733 23 54 0 0 chr6 19470478 19470515 -130046522 + AT_rich Low_complexity Low_complexity 1 37 0 6 733 4797 38 2 0 chr6 19470707 19471283 -130045754 + L1Md_F3 LINE L1 6007 6583 -1 6 733 4893 78 6 26 chr6 19471397 19472092 -130044945 - L1Md_F2 LINE L1 -1 6581 5901 6 733 297 51 0 0 chr6 19473117 19473156 -130043881 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 733 334 208 0 0 chr6 19474035 19474107 -130042930 + Lx2 LINE L1 6923 6994 -3 6 733 201 382 0 0 chr6 19474199 19474275 -130042762 - L2c LINE L2 -33 3354 3279 6 733 752 189 136 6 chr6 19474759 19474935 -130042102 + Lx4A LINE L1 6857 7055 -3 6 733 216 214 0 0 chr6 19474935 19474977 -130042060 + (TAA)n Simple_repeat Simple_repeat 1 42 0 6 733 6467 98 10 4 chr6 19475085 19476005 -130041032 + L1_Mus3 LINE L1 5703 6613 -25 6 733 1476 11 6 0 chr6 19476021 19476201 -130040836 - L1Md_T LINE L1 0 6582 6402 6 733 23 54 0 0 chr6 19476297 19476334 -130040703 + AT_rich Low_complexity Low_complexity 1 37 0 6 733 3395 35 0 0 chr6 19476531 19476927 -130040110 + MTA_Mm LTR MaLR 1 396 0 6 733 7882 80 23 3 chr6 19476927 19478001 -130039036 + MTA_Mm-int LTR MaLR 1 1096 -2 6 733 3390 43 0 0 chr6 19478003 19478399 -130038638 + MTA_Mm LTR MaLR 1 396 0 6 733 5277 78 2 1 chr6 19478622 19479545 -130037492 - L1_Mus1 LINE L1 -535 6032 5108 6 733 1951 106 0 0 chr6 19479543 19479825 -130037212 - L1_Mus1 LINE L1 -1280 4603 4322 6 733 3536 115 12 0 chr6 19479826 19480341 -130036696 + L1_Mus1 LINE L1 6046 6566 -1 6 733 456 100 0 0 chr6 19480353 19480423 -130036614 + L1_Mus2 LINE L1 5998 6067 -499 6 733 25 65 0 0 chr6 19480454 19480500 -130036537 + AT_rich Low_complexity Low_complexity 1 46 0 6 733 28 91 0 0 chr6 19481409 19481486 -130035551 + AT_rich Low_complexity Low_complexity 1 77 0 6 733 309 219 0 0 chr6 19483066 19483139 -130033898 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 6 733 189 214 125 0 chr6 19483303 19483359 -130033678 - L3 LINE CR1 -897 3592 3530 6 733 3182 134 56 19 chr6 19483849 19484607 -130032430 - Lx3C LINE L1 -551 6103 5335 6 733 626 236 41 55 chr6 19484933 19485153 -130031884 + Lx6 LINE L1 5994 6210 -1250 6 733 1718 274 86 0 chr6 19485155 19485607 -130031430 + Lx6 LINE L1 6784 7274 -186 6 733 421 302 108 26 chr6 19487428 19487622 -130029415 - MER58A DNA MER1_type -3 221 12 6 733 33 56 0 0 chr6 19488741 19488795 -130028242 + AT_rich Low_complexity Low_complexity 1 54 0 6 733 221 250 32 11 chr6 19489067 19489160 -130027877 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 733 390 21 0 0 chr6 19489668 19489715 -130027322 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 733 574 239 5 213 chr6 19489739 19489946 -130027091 + RMER1A Other Other 32 186 -844 6 733 6381 88 39 3 chr6 19489946 19490877 -130026160 + MTB-int LTR MaLR 135 1098 0 6 733 2974 74 10 0 chr6 19490879 19491273 -130025764 + MTB LTR MaLR 3 400 0 6 733 3889 234 106 18 chr6 19491680 19491733 -130025304 + Lx5 LINE L1 5930 5980 -1070 6 733 3543 165 96 3 chr6 19491733 19492407 -130024630 + RMER19A LTR ERVK 1 737 0 6 733 3889 234 106 18 chr6 19492407 19493315 -130023722 + Lx5 LINE L1 5981 6976 -74 6 733 22 56 0 0 chr6 19493855 19493891 -130023146 + AT_rich Low_complexity Low_complexity 1 36 0 6 733 1329 325 41 2 chr6 19494574 19495033 -130022004 - Lx6 LINE L1 -714 6746 6270 6 733 560 219 24 0 chr6 19495032 19495155 -130021882 - L1_Mur2 LINE L1 -2275 3602 3477 6 733 235 143 41 0 chr6 19495224 19495273 -130021764 - L1_Mur2 LINE L1 -2404 3476 3426 6 733 3934 112 23 21 chr6 19495268 19495926 -130021111 - MusHAL1 LINE L1 -1316 1396 738 6 733 913 200 31 4 chr6 19495921 19496147 -130020890 - L1_Mur2 LINE L1 -2442 3438 3207 6 733 1028 182 0 132 chr6 19496145 19496263 -130020774 - L1_Mur2 LINE L1 -4513 1367 1266 6 733 1143 61 0 0 chr6 19496263 19496411 -130020626 + (TTTC)n Simple_repeat Simple_repeat 2 149 0 6 733 2451 173 22 5 chr6 19496415 19496863 -130020174 - Lx3B LINE L1 -2 6971 6516 6 733 1028 266 62 81 chr6 19496863 19497356 -130019681 - L1_Mur2 LINE L1 -5818 1268 813 6 733 1105 75 0 0 chr6 19497356 19497503 -130019534 - B1_Mm SINE Alu 0 147 1 6 733 890 284 74 123 chr6 19497503 19497965 -130019072 - L1_Mur2 LINE L1 -6916 812 340 6 733 2218 266 75 133 chr6 19498201 19498461 -130018576 + RMER19B LTR ERVK 1 411 -491 6 733 204 67 0 0 chr6 19498461 19498491 -130018546 + (CAAAC)n Simple_repeat Simple_repeat 2 31 0 6 733 2218 180 142 16 chr6 19498491 19498910 -130018127 + RMER19B LTR ERVK 412 889 -13 6 733 315 349 8 16 chr6 19500000 19500128 -130016909 - ID_B1 SINE B4 -18 206 80 1 733 248 321 13 13 chr6 19501134 19501213 -130015824 - MLT1E3 LTR MaLR -76 548 470 2 733 248 246 67 128 chr6 19502391 19502540 -130014497 + MamRep434 DNA TcMar 174 313 -113 3 733 6514 108 7 25 chr6 19503040 19504100 -130012937 - MusHAL1 LINE L1 -780 1932 892 4 733 2386 155 26 2 chr6 19504101 19504529 -130012508 + Lx LINE L1 6216 6653 -1 5 733 28 29 0 0 chr6 19504752 19504787 -130012250 + AT_rich Low_complexity Low_complexity 1 35 0 6 733 293 394 52 42 chr6 19506719 19506931 -130010106 - MER20 DNA MER1_type -4 215 2 7 733 2340 106 19 6 chr6 19507426 19507788 -130009249 + Lx3_Mus LINE L1 6643 7009 0 8 733 360 349 57 28 chr6 19507924 19508101 -130008936 - B3A SINE B2 -1 197 16 9 733 555 16 0 0 chr6 19509038 19509102 -130007935 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 733 21 71 0 0 chr6 19509364 19509406 -130007631 + AT_rich Low_complexity Low_complexity 1 42 0 1 733 296 231 15 0 chr6 19509514 19509579 -130007458 - ID4_ SINE ID -16 67 2 1 733 465 19 0 0 chr6 19509833 19509887 -130007150 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 733 23 0 0 0 chr6 19509931 19509954 -130007083 + AT_rich Low_complexity Low_complexity 1 23 0 1 733 1422 273 17 52 chr6 19510131 19510505 -130006532 + MTE2b LTR MaLR 10 366 -4 1 733 828 319 47 13 chr6 19510581 19510816 -130006221 + B4A SINE B4 25 267 -25 1 733 359 53 35 0 chr6 19510858 19510915 -130006122 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 1 733 1292 249 56 12 chr6 19513716 19514058 -130002979 + ORR1D1 LTR MaLR 1 357 -17 1 733 6446 111 24 20 chr6 19514060 19515075 -130001962 + L1_Mus3 LINE L1 5620 6638 0 1 733 243 234 12 49 chr6 19515119 19515200 -130001837 - L1M2 LINE L1 -931 5212 5135 2 733 22 35 0 0 chr6 19515363 19515392 -130001645 + AT_rich Low_complexity Low_complexity 1 29 0 2 733 23 78 0 0 chr6 19515888 19515939 -130001098 + AT_rich Low_complexity Low_complexity 1 51 0 2 733 405 317 120 5 chr6 19516134 19516318 -130000719 - RLTR11A2 LTR ERVK -284 243 39 2 733 431 35 18 0 chr6 19516327 19516384 -130000653 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 2 733 909 147 5 32 chr6 19516384 19516565 -130000472 - Lx3A LINE L1 -16 6965 6789 2 733 4995 140 29 0 chr6 19516565 19517399 -129999638 + L1_Mm LINE L1 4242 5099 -784 2 733 3315 30 8 0 chr6 19518588 19518981 -129998056 - MTA_Mm LTR MaLR 0 396 1 2 733 186 71 0 0 chr6 19519283 19519311 -129997726 + (A)n Simple_repeat Simple_repeat 1 28 0 2 733 22 0 0 0 chr6 19519763 19519785 -129997252 + AT_rich Low_complexity Low_complexity 1 22 0 2 733 21 0 0 0 chr6 19520530 19520551 -129996486 + AT_rich Low_complexity Low_complexity 1 21 0 3 733 360 329 29 119 chr6 19520598 19520909 -129996128 + B4 SINE B4 2 284 -8 3 733 495 285 107 51 chr6 19521300 19521496 -129995541 + B3A SINE B2 2 208 -8 3 733 254 77 0 84 chr6 19521500 19521571 -129995466 + C-rich Low_complexity Low_complexity 2 66 0 3 733 411 113 0 0 chr6 19521571 19521633 -129995404 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 733 28 48 0 0 chr6 19521783 19521825 -129995212 + AT_rich Low_complexity Low_complexity 1 42 0 3 733 262 157 23 57 chr6 19521904 19522037 -129995000 + A-rich Low_complexity Low_complexity 1 128 0 3 733 287 231 12 25 chr6 19522072 19522152 -129994885 - Lx7 LINE L1 -429 7267 7189 3 733 198 0 0 0 chr6 19522191 19522213 -129994824 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 3 733 2319 249 44 34 chr6 19522248 19522862 -129994175 - Lx6 LINE L1 -177 7283 6664 3 733 378 0 0 0 chr6 19522882 19522924 -129994113 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 733 1147 196 17 0 chr6 19523038 19523278 -129993759 + Lx2A1 LINE L1 6763 7006 -2 4 733 214 301 93 43 chr6 19524067 19524206 -129992831 - B1F1 SINE Alu -1 148 3 4 733 1061 103 7 0 chr6 19524258 19524404 -129992633 - B1_Mus1 SINE Alu 0 148 2 4 733 251 362 88 36 chr6 19524491 19524683 -129992354 + MLT1D LTR MaLR 302 503 -2 4 733 348 350 64 27 chr6 19525737 19525925 -129991112 - MER77 LTR ERVL -127 480 286 4 733 1581 281 60 17 chr6 19527337 19527935 -129989102 + L1_Mur3 LINE L1 4196 4819 -1061 4 733 264 252 43 9 chr6 19527986 19528102 -129988935 + L1M2 LINE L1 5192 5311 -832 4 733 298 240 113 30 chr6 19528280 19528413 -129988624 - L1M1 LINE L1 -760 5540 5397 4 733 181 288 164 0 chr6 19528861 19528934 -129988103 - MIRb SINE MIR -101 167 83 4 733 585 76 0 0 chr6 19529150 19529229 -129987808 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 734 189 0 0 0 chr6 19532122 19532143 -129984894 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 734 785 306 77 3 chr6 19532201 19532552 -129984485 + MTEa LTR MaLR 3 379 0 5 734 184 311 0 63 chr6 19532617 19532696 -129984341 + MIR SINE MIR 16 89 -173 5 734 192 40 0 0 chr6 19532931 19532956 -129984081 + (T)n Simple_repeat Simple_repeat 1 25 0 5 734 2809 40 99 0 chr6 19532984 19533358 -129983679 - IAPLTR2_Mm LTR ERVK 0 411 1 5 734 14060 67 7 5 chr6 19533360 19535158 -129981879 - IAPEz-int LTR ERVK -2 6479 4678 5 734 1857 83 0 0 chr6 19535176 19535416 -129981621 - IAPEY3-int LTR ERVK -5183 2497 2258 5 734 400 70 0 0 chr6 19535421 19535478 -129981559 - B1_Mus1 SINE Alu -91 57 1 5 734 5030 68 68 54 chr6 19535478 19536368 -129980669 - IAPEz-int LTR ERVK -5486 995 168 5 734 245 309 0 0 chr6 19536368 19536423 -129980614 - RLTR27 LTR ERVK -34 275 221 5 734 969 101 94 6 chr6 19536423 19536593 -129980444 - IAPEz-int LTR ERVK -6288 193 9 5 734 3020 63 65 33 chr6 19536594 19537054 -129979983 - IAPLTR2_Mm LTR ERVK 0 475 1 5 734 1702 273 60 37 chr6 19537147 19537684 -129979353 + RMER15 LTR ERVL 22 570 -5 5 734 1395 265 51 78 chr6 19537814 19538002 -129979035 - Lx6 LINE L1 -11 7449 7268 6 734 616 76 0 0 chr6 19538002 19538094 -129978943 + L1_Mus1 LINE L1 6474 6565 -2 6 734 1395 265 51 78 chr6 19538094 19538355 -129978682 - Lx6 LINE L1 -193 7267 7012 6 734 246 255 40 10 chr6 19538789 19538888 -129978149 + L1VL1 LINE L1 2 103 -6319 6 734 32145 84 0 4 chr6 19538876 19544387 -129972650 + L1Md_F2 LINE L1 98 5585 -298 6 734 7879 49 2 2 chr6 19544392 19545373 -129971664 + L1Md_F2 LINE L1 5588 6568 -14 6 734 243 0 0 0 chr6 19545383 19545410 -129971627 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 734 214 285 67 30 chr6 19545501 19545635 -129971402 + L2 LINE L2 1377 1515 -1904 6 734 564 53 0 0 chr6 19545675 19545751 -129971286 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 734 255 241 46 46 chr6 19545924 19546011 -129971026 - ORR1B2 LTR MaLR -20 339 253 6 734 244 258 30 30 chr6 19546557 19546657 -129970380 - L1MB2 LINE L1 -60 6111 6012 6 734 2788 231 64 31 chr6 19546713 19547465 -129969572 - Lx2B LINE L1 -2 6998 6222 6 734 1324 258 56 24 chr6 19547466 19547875 -129969162 + RMER5 LTR ERV1 13 434 -100 7 734 432 0 0 0 chr6 19547998 19548046 -129968991 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 734 855 98 0 0 chr6 19548119 19548242 -129968795 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 7 734 213 238 31 16 chr6 19548301 19548365 -129968672 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 7 734 259 293 119 65 chr6 19549085 19549253 -129967784 - Lx7 LINE L1 -1458 6002 5826 7 734 1164 245 119 3 chr6 19549921 19550248 -129966789 - ORR1B2 LTR MaLR -2 365 1 7 734 431 218 0 0 chr6 19550248 19550323 -129966714 - ORR1B2-int LTR MaLR 0 1509 1435 7 734 1474 205 18 52 chr6 19550323 19550652 -129966385 + ORR1A3 LTR MaLR 1 318 -8 7 734 6249 167 35 89 chr6 19550656 19552089 -129964948 + ORR1A3-int LTR MaLR 1 1356 -607 7 734 1103 182 31 36 chr6 19552095 19552317 -129964720 - ORR1B2 LTR MaLR -146 221 1 6 734 216 0 0 0 chr6 19552528 19552552 -129964485 + (A)n Simple_repeat Simple_repeat 1 24 0 7 734 300 373 101 8 chr6 19553288 19553407 -129963630 + B1F1 SINE Alu 12 141 -8 7 734 784 279 83 91 chr6 19554395 19554770 -129962267 + MTE2a LTR MaLR 5 376 -3 7 734 207 0 0 0 chr6 19558850 19558873 -129958164 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 734 21 0 0 0 chr6 19559357 19559378 -129957659 + AT_rich Low_complexity Low_complexity 1 21 0 8 734 2192 56 0 19 chr6 19559703 19559835 -129957202 - L1_Mus1 LINE L1 -604 5963 5836 8 734 4238 50 0 2 chr6 19559835 19560339 -129956698 + RLTR1C LTR ERV1 1 503 0 8 734 2192 56 0 19 chr6 19560339 19560517 -129956520 - L1_Mus1 LINE L1 -732 5835 5659 8 734 4681 89 0 0 chr6 19560517 19561136 -129955901 + L1_Mus1 LINE L1 5948 6566 -1 8 734 219 180 0 20 chr6 19561223 19561274 -129955763 + (ATTG)n Simple_repeat Simple_repeat 2 51 0 8 734 21 71 0 0 chr6 19561470 19561512 -129955525 + AT_rich Low_complexity Low_complexity 1 42 0 8 734 21 36 0 0 chr6 19561550 19561578 -129955459 + AT_rich Low_complexity Low_complexity 1 28 0 8 734 206 243 14 41 chr6 19561963 19562036 -129955001 + (TATG)n Simple_repeat Simple_repeat 1 71 0 8 734 624 312 10 91 chr6 19562344 19562552 -129954485 - ID_B1 SINE B4 -19 205 15 8 734 281 185 61 12 chr6 19562560 19562642 -129954395 - RCHARR1 DNA MER1_type -410 564 479 8 734 361 364 54 68 chr6 19562655 19562876 -129954161 + ID_B1 SINE B4 2 219 -5 9 734 192 77 0 0 chr6 19562878 19562904 -129954133 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 9 734 492 93 0 0 chr6 19562907 19562982 -129954055 + (CATA)n Simple_repeat Simple_repeat 2 76 0 9 734 1363 227 41 39 chr6 19563028 19563390 -129953647 - ORR1C1 LTR MaLR -8 370 8 9 734 1863 222 60 19 chr6 19563397 19563866 -129953171 - ORR1C1-int LTR MaLR 0 1509 1022 9 734 897 264 92 18 chr6 19563846 19564261 -129952776 + ORR1B1-int LTR MaLR 342 783 -587 9 734 1465 241 26 6 chr6 19564271 19564617 -129952420 - ORR1C1-int LTR MaLR -1155 354 2 9 734 1623 192 36 59 chr6 19564618 19565005 -129952032 - ORR1C1 LTR MaLR 0 378 1 9 734 906 331 52 10 chr6 19565114 19565422 -129951615 - RCHARR1 DNA MER1_type -651 323 3 8 734 462 288 114 57 chr6 19565478 19565688 -129951349 - MER92B LTR ERV1 -414 222 1 9 734 5233 196 43 10 chr6 19566244 19567932 -129949105 + Lx3C LINE L1 5196 6876 -100 9 734 297 317 109 0 chr6 19568611 19568712 -129948325 + B4 SINE B4 177 288 -4 9 734 24 32 0 0 chr6 19568903 19568934 -129948103 + AT_rich Low_complexity Low_complexity 1 31 0 9 734 227 260 143 0 chr6 19569017 19569094 -129947943 - L2 LINE L2 -1622 1797 1710 9 734 186 282 62 25 chr6 19569239 19569319 -129947718 - L2 LINE L2 -1878 1541 1459 9 734 859 263 99 20 chr6 19569698 19569860 -129947177 + ORR1D1 LTR MaLR 1 175 -199 1 734 504 0 0 0 chr6 19569860 19569916 -129947121 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 734 859 263 99 20 chr6 19569916 19570098 -129946939 + ORR1D1 LTR MaLR 176 371 -3 1 734 349 294 44 35 chr6 19570219 19570332 -129946705 - ID_B1 SINE B4 -29 195 82 1 734 436 294 42 26 chr6 19570706 19570898 -129946139 - MER89 LTR ERV1 0 559 365 1 734 896 205 0 6 chr6 19571079 19571255 -129945782 + B2_Mm2 SINE B2 1 175 -18 1 734 23 33 0 0 chr6 19571321 19571351 -129945686 + AT_rich Low_complexity Low_complexity 1 30 0 1 734 1562 230 57 0 chr6 19571437 19571789 -129945248 + ORR1B1 LTR MaLR 23 394 0 1 734 181 146 0 40 chr6 19571874 19571924 -129945113 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 734 359 247 5 122 chr6 19571980 19572169 -129944868 - Lx2B LINE L1 -1 6999 6833 1 734 2886 89 0 0 chr6 19572235 19572639 -129944398 - L1_Mus3 LINE L1 -401 6237 5834 1 734 2850 78 5 64 chr6 19572639 19573063 -129943974 + L1_Mus3 LINE L1 6231 6629 -9 1 734 2139 196 16 5 chr6 19573243 19573678 -129943359 + MERVL_2A-int LTR ERVL 2957 3396 -2365 1 734 5922 113 10 3 chr6 19573678 19574608 -129942429 + L1_Mur1 LINE L1 4865 5800 -86 1 734 765 97 0 0 chr6 19574609 19574712 -129942325 + U6 snRNA snRNA 2 104 -3 1 734 17481 91 52 48 chr6 19574714 19576721 -129940316 + L1Md_F LINE L1 621 2817 -3066 1 734 1317 63 0 28 chr6 19576721 19576881 -129940156 + B2_Mm1t SINE B2 1 160 -33 1 734 366 23 0 0 chr6 19576881 19576924 -129940113 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 734 1317 63 0 28 chr6 19576924 19576942 -129940095 + B2_Mm1t SINE B2 161 174 -19 1 734 17481 89 55 65 chr6 19576942 19577139 -129939898 + L1Md_F LINE L1 2818 3009 -2874 1 734 1058 95 0 0 chr6 19577139 19577276 -129939761 + B1_Mus1 SINE Alu 1 137 -11 1 734 600 62 0 0 chr6 19577277 19577358 -129939679 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 1 734 17481 89 55 65 chr6 19577358 19578707 -129938330 + L1Md_F LINE L1 3010 4348 -1535 1 734 1528 125 84 2 chr6 19578708 19578969 -129938068 + L1Md_F2 LINE L1 383 673 -5943 1 734 23687 107 16 7 chr6 19578968 19583309 -129933728 + L1Md_F2 LINE L1 1067 5585 -298 1 734 6846 101 13 4 chr6 19583310 19584063 -129932974 + L1Md_F2 LINE L1 5587 6347 -235 1 734 189 0 0 0 chr6 19584063 19584084 -129932953 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1 734 6846 101 13 4 chr6 19584084 19584315 -129932722 + L1Md_F2 LINE L1 6348 6578 -4 1 734 5150 129 40 10 chr6 19584321 19584440 -129932597 + Lx3_Mus LINE L1 5787 5907 -1102 1 734 267 31 0 0 chr6 19584440 19584472 -129932565 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1 734 5150 129 40 10 chr6 19584472 19585239 -129931798 + Lx3_Mus LINE L1 5908 6699 -310 1 734 270 94 47 0 chr6 19586472 19586536 -129930501 + (TTTTTG)n Simple_repeat Simple_repeat 3 69 0 1 734 1168 62 14 0 chr6 19586537 19586681 -129930356 - B1_Mus1 SINE Alu 0 148 3 1 734 465 19 0 0 chr6 19587045 19587099 -129929938 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 734 210 26 24 49 chr6 19587270 19587311 -129929726 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 1 734 1796 179 13 0 chr6 19587348 19587661 -129929376 - ORR1A2 LTR MaLR -10 317 1 1 734 5280 179 99 13 chr6 19587696 19588522 -129928515 - ORR1A2-int LTR MaLR -3 1960 1038 1 734 1041 24 0 0 chr6 19588522 19588646 -129928391 + (TTC)n Simple_repeat Simple_repeat 2 125 0 1 734 1148 89 99 6 chr6 19588648 19588829 -129928208 - L1_Mus3 LINE L1 -12 6626 6429 1 734 5280 200 89 56 chr6 19588829 19589447 -129927590 - ORR1A2-int LTR MaLR -926 1037 346 1 734 292 200 117 0 chr6 19589426 19589486 -129927551 + ORR1A3 LTR MaLR 79 145 -181 1 734 516 170 20 0 chr6 19589485 19589585 -129927452 - ORR1A2 LTR MaLR -224 103 2 1 734 453 174 79 44 chr6 19590143 19590246 -129926791 + PB1D9 SINE Alu 1 108 -12 1 734 221 0 65 43 chr6 19590246 19590292 -129926745 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 734 252 354 117 29 chr6 19590667 19591008 -129926029 - L2 LINE L2 -714 2705 2335 1 734 28 48 0 0 chr6 19591187 19591229 -129925808 + AT_rich Low_complexity Low_complexity 1 42 0 1 734 2272 157 21 3 chr6 19591941 19592330 -129924707 - Lx2 LINE L1 -2 6995 6600 1 734 3503 183 42 30 chr6 19593377 19594114 -129922923 + L1VL2 LINE L1 63 808 -5527 1 734 249 208 196 56 chr6 19594114 19594221 -129922816 + RLTR6_Mm LTR ERV1 1 122 -532 1 734 2410 115 205 27 chr6 19594223 19594706 -129922331 + RLTR6_Mm LTR ERV1 37 605 -49 1 734 64059 16 12 1 chr6 19594706 19602400 -129914637 + RLTR6-int LTR ERV1 1 7778 0 1 734 241 161 219 31 chr6 19602400 19602464 -129914573 + RLTR6_Mm LTR ERV1 1 76 -578 1 734 2276 116 215 26 chr6 19602509 19602970 -129914067 + RLTR6_Mm LTR ERV1 37 584 -70 1 734 3343 95 27 0 chr6 19602971 19603619 -129913418 + L1VL4 LINE L1 750 1414 -2145 1 734 1219 264 62 6 chr6 19603619 19604049 -129912988 - RLTR1 LTR ERV1 0 624 129 1 734 3042 97 21 21 chr6 19604133 19604650 -129912387 + MusHAL1 LINE L1 564 1080 -1632 1 734 6782 75 21 5 chr6 19604663 19606497 -129910540 - L1VL1 LINE L1 -3591 2292 426 1 734 180 0 0 0 chr6 19606498 19606518 -129910519 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 734 216 338 26 26 chr6 19607042 19607118 -129909919 - PB1D10 SINE Alu -21 96 21 1 734 40 79 0 0 chr6 19607779 19607868 -129909169 + AT_rich Low_complexity Low_complexity 1 89 0 1 734 29 0 0 0 chr6 19608145 19608174 -129908863 + AT_rich Low_complexity Low_complexity 1 29 0 1 734 6722 133 15 18 chr6 19609332 19610471 -129906566 - Lx3A LINE L1 -3 6978 5844 1 734 1503 184 0 41 chr6 19610471 19610766 -129906271 + L1_Mur1 LINE L1 5428 5710 -176 1 734 601 188 51 0 chr6 19611089 19611206 -129905831 - ETnERV2-int LTR ERVK -214 7192 7070 1 734 525 136 0 0 chr6 19611390 19611493 -129905544 + (TCTG)n Simple_repeat Simple_repeat 2 104 0 1 734 459 0 0 0 chr6 19611508 19611559 -129905478 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 734 2034 271 112 85 chr6 19611784 19611894 -129905143 - RCHARR1 DNA MER1_type -26 948 840 1 734 2119 93 0 7 chr6 19611894 19612187 -129904850 + L1_Mus2 LINE L1 6274 6564 -2 1 734 1936 57 88 14 chr6 19612169 19612453 -129904584 + L1Md_F3 LINE L1 6278 6582 -2 1 734 2034 271 112 85 chr6 19612453 19612542 -129904495 - RCHARR1 DNA MER1_type -135 839 757 1 734 992 110 14 0 chr6 19612542 19612688 -129904349 + B1_Mus1 SINE Alu 1 148 0 1 734 2034 271 112 85 chr6 19612688 19613404 -129903633 - RCHARR1 DNA MER1_type -218 756 7 1 734 557 281 5 27 chr6 19613563 19613749 -129903288 - B2_Mm2 SINE B2 -19 174 2 1 734 299 285 60 123 chr6 19614314 19614566 -129902471 + MER67C LTR ERV1 10 245 -466 1 734 299 374 68 11 chr6 19614586 19614762 -129902275 + ORR1E LTR MaLR 3 188 -171 1 734 4657 102 19 6 chr6 19614849 19615528 -129901509 - L1Md_F2 LINE L1 -4 6578 5891 1 734 5656 103 23 62 chr6 19615528 19616503 -129900534 - L1Md_F2 LINE L1 -12 6570 5634 1 734 1488 103 0 0 chr6 19616506 19616719 -129900318 - L1Md_F2 LINE L1 -664 5219 5007 1 734 237 280 151 50 chr6 19616719 19616858 -129900179 + RMER20A LTR ERVK 96 248 -268 1 734 24954 100 11 13 chr6 19616858 19621345 -129895692 - L1Md_F LINE L1 -1016 4867 389 1 734 722 260 130 53 chr6 19621704 19622065 -129894972 + MER67C LTR ERV1 320 708 -3 1 734 180 306 15 75 chr6 19622642 19622709 -129894328 - L2 LINE L2 -2120 1299 1237 1 734 22 35 0 0 chr6 19622751 19622780 -129894257 + AT_rich Low_complexity Low_complexity 1 29 0 1 734 762 93 8 0 chr6 19623094 19623212 -129893825 + L1_Mus1 LINE L1 6448 6566 -1 1 734 471 380 0 7 chr6 19623452 19623595 -129893442 + B3 SINE B2 2 143 -73 1 734 198 43 0 98 chr6 19624843 19624894 -129892143 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 1 734 593 282 167 47 chr6 19625036 19625293 -129891744 - RMER15 LTR ERVL -1 574 287 1 734 476 289 31 43 chr6 19625304 19625467 -129891570 - RMER15 LTR ERVL -414 161 1 1 734 2371 40 3 3 chr6 19625700 19625998 -129891039 - L1Md_F2 LINE L1 -2 6580 6283 1 734 337 206 18 61 chr6 19626009 19626123 -129890914 + RMER1A Other Other 922 1030 0 1 734 2357 264 63 73 chr6 19626100 19626987 -129890050 - RMER1B Other Other -125 941 64 1 734 1003 97 13 33 chr6 19628392 19628528 -129888509 + B1_Mm SINE Alu 1 138 -9 1 734 308 24 24 0 chr6 19628528 19628569 -129888468 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 734 1003 97 13 33 chr6 19628569 19628582 -129888455 + B1_Mm SINE Alu 139 147 0 1 734 492 18 0 0 chr6 19628744 19628801 -129888236 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 734 2298 52 18 58 chr6 19628802 19629131 -129887906 + L1_Mus1 LINE L1 6008 6323 -244 1 734 661 382 57 18 chr6 19629309 19629751 -129887286 + MLT1C LTR MaLR 1 459 -8 1 734 183 42 0 0 chr6 19630012 19630036 -129887001 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 734 297 231 14 29 chr6 19630178 19630194 -129886843 + (TTATA)n Simple_repeat Simple_repeat 1 16 0 1 734 333 267 88 67 chr6 19630194 19630387 -129886650 - B3A SINE B2 -1 197 1 1 734 297 231 14 29 chr6 19630387 19630508 -129886529 + (TTATA)n Simple_repeat Simple_repeat 2 120 0 1 734 246 314 71 82 chr6 19630635 19630902 -129886135 - RMER15 LTR ERVL -2 573 310 1 734 44 46 0 0 chr6 19631567 19631632 -129885405 + AT_rich Low_complexity Low_complexity 1 65 0 1 734 181 278 70 30 chr6 19631789 19631889 -129885148 - L2 LINE L2 -1807 1612 1509 1 734 437 152 52 35 chr6 19632106 19632222 -129884815 + Lx9 LINE L1 7524 7641 -3 1 734 679 324 24 5 chr6 19632510 19632721 -129884316 - B3 SINE B2 0 216 2 1 734 414 0 0 0 chr6 19632972 19633018 -129884019 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 734 1409 231 80 168 chr6 19633343 19634009 -129883028 + RMER19C LTR ERVK 2 608 -3 1 734 424 363 0 6 chr6 19634275 19634444 -129882593 - Lx7 LINE L1 -904 6792 6625 1 734 6400 121 2 46 chr6 19634536 19635601 -129881436 + L1_Mus1 LINE L1 5548 6565 -2 1 734 3661 126 68 13 chr6 19635613 19636230 -129880807 + Lx LINE L1 5998 6648 -6 1 734 4050 33 0 2 chr6 19637097 19637577 -129879460 - L1Md_F2 LINE L1 -11 6571 6093 1 734 4091 201 45 11 chr6 19637838 19638681 -129878356 + Lx4B LINE L1 6176 7047 -11 1 734 230 182 84 74 chr6 19638693 19638788 -129878249 + L1MCa LINE L1 1870 1965 -4543 1 734 648 209 11 6 chr6 19638788 19638966 -129878071 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 734 306 0 0 0 chr6 19640517 19640551 -129876486 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 1 734 322 338 132 9 chr6 19640943 19641170 -129875867 + HAL1-3A_ME LINE L1 1963 2217 -641 1 734 21 0 0 0 chr6 19641282 19641303 -129875734 + AT_rich Low_complexity Low_complexity 1 21 0 1 734 420 37 0 0 chr6 19641907 19641961 -129875076 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 734 461 291 120 27 chr6 19642057 19642357 -129874680 - L1MB2 LINE L1 -207 5964 5637 1 734 240 35 0 0 chr6 19642746 19642775 -129874262 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 734 771 90 9 0 chr6 19642779 19642890 -129874147 - B1_Mus1 SINE Alu -31 117 6 2 734 360 229 37 96 chr6 19642783 19642918 -129874119 - MT2B LTR ERVL -337 264 138 2 734 351 339 28 47 chr6 19644151 19644391 -129872646 - Lx8 LINE L1 -226 7418 7054 2 734 253 62 0 0 chr6 19644390 19644422 -129872615 - L1Md_T LINE L1 -428 6154 6123 2 734 8180 77 3 2 chr6 19644608 19646116 -129870921 - L1Md_F3 LINE L1 -297 6287 4781 2 734 2059 88 26 0 chr6 19646115 19646422 -129870615 - L1Md_F3 LINE L1 -1970 3913 3599 2 734 4025 122 106 22 chr6 19646420 19647315 -129869722 - L1Md_F3 LINE L1 -4468 1415 448 2 734 310 243 0 0 chr6 19647563 19647637 -129869400 + MTEb LTR MaLR 300 373 -6 2 734 245 98 24 0 chr6 19647755 19647796 -129869241 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 734 272 202 49 32 chr6 19647798 19647921 -129869116 + (CATAT)n Simple_repeat Simple_repeat 1 125 0 2 734 260 114 51 51 chr6 19647927 19648084 -129868953 + (TA)n Simple_repeat Simple_repeat 1 157 0 2 734 28 29 0 0 chr6 19648128 19648163 -129868874 + AT_rich Low_complexity Low_complexity 1 35 0 2 734 447 302 6 6 chr6 19648174 19648333 -129868704 + L1M2 LINE L1 5654 5812 -488 2 734 7296 96 2 1 chr6 19648552 19649882 -129867155 + L1_Mus1 LINE L1 5237 6567 0 2 734 284 406 29 0 chr6 19650504 19650642 -129866395 - RSINE1 SINE B4 -12 153 12 2 734 5059 11 0 5 chr6 19651027 19651632 -129865405 + L1Md_T LINE L1 6011 6582 0 2 734 204 40 0 0 chr6 19651834 19651859 -129865178 + (A)n Simple_repeat Simple_repeat 1 25 0 2 734 242 352 0 0 chr6 19652081 19652152 -129864885 + MER70A LTR ERVL 396 466 -6 2 734 335 306 64 9 chr6 19652252 19652361 -129864676 - L1M2 LINE L1 -2605 3538 3424 2 734 592 160 0 0 chr6 19652367 19652467 -129864570 + ORR1B1 LTR MaLR 295 394 0 2 734 381 202 12 12 chr6 19652468 19652548 -129864489 + ORR1B1-int LTR MaLR 2 81 -1882 2 734 230 202 26 44 chr6 19653643 19653757 -129863280 + (TTTA)n Simple_repeat Simple_repeat 2 113 0 2 734 788 174 7 0 chr6 19653897 19654052 -129862985 + CT-rich Low_complexity Low_complexity 1 156 0 2 734 555 254 30 0 chr6 19654209 19654378 -129862659 + Lx6 LINE L1 7149 7322 -138 2 734 414 241 0 0 chr6 19655312 19655420 -129861617 + (TATATG)n Simple_repeat Simple_repeat 6 113 0 2 734 21 36 0 0 chr6 19656502 19656530 -129860507 + AT_rich Low_complexity Low_complexity 1 28 0 2 734 1905 305 30 26 chr6 19656863 19657631 -129859406 - RMER1A Other Other -371 659 8 2 734 3149 190 38 71 chr6 19657947 19658004 -129859033 + RMER6D LTR ERVK 4 60 -660 2 734 207 0 0 0 chr6 19658004 19658027 -129859010 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 734 3149 190 38 71 chr6 19658027 19658343 -129858694 + RMER6D LTR ERVK 61 368 -352 2 734 414 0 0 0 chr6 19658343 19658389 -129858648 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 734 3149 190 38 71 chr6 19658389 19658467 -129858570 + RMER6D LTR ERVK 369 446 -274 2 734 1080 110 0 0 chr6 19658467 19658613 -129858424 + B1_Mus1 SINE Alu 1 146 -2 2 734 207 0 0 0 chr6 19658613 19658636 -129858401 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 734 3149 190 38 71 chr6 19658636 19658923 -129858114 + RMER6D LTR ERVK 447 719 -1 2 734 405 0 0 0 chr6 19659000 19659045 -129857992 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 734 360 310 104 44 chr6 19659143 19659325 -129857712 - ORR1E LTR MaLR -106 253 61 2 734 2550 36 0 0 chr6 19659325 19659628 -129857409 + L1Md_F2 LINE L1 6252 6554 -28 2 734 356 40 20 0 chr6 19659628 19659678 -129857359 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 734 1411 93 61 0 chr6 19659701 19659915 -129857122 + L1_Mus2 LINE L1 6340 6566 0 2 734 571 388 79 59 chr6 19659997 19660183 -129856854 - ORR1E-int LTR MaLR -34 1546 1290 2 734 779 247 46 0 chr6 19660183 19660357 -129856680 + URR1B DNA MER1_type 1 182 -43 2 734 571 388 79 59 chr6 19660357 19660654 -129856383 - ORR1E-int LTR MaLR -34 1289 877 2 91 1192 192 91 12 chr6 19660665 19660935 -129856102 - Lx5 LINE L1 -482 6568 6303 2 735 1775 199 52 6 chr6 19660987 19661330 -129855707 + ORR1B2 LTR MaLR 1 359 -8 2 735 226 369 159 15 chr6 19661352 19661484 -129855553 - ORR1E-int LTR MaLR -770 810 660 2 735 2493 133 101 10 chr6 19661490 19661906 -129855131 + Lx2 LINE L1 6543 6996 -1 2 735 336 313 20 0 chr6 19662050 19662149 -129854888 - ORR1E-int LTR MaLR -1475 105 5 2 735 327 337 71 109 chr6 19662166 19662349 -129854688 - ORR1E LTR MaLR -2 377 202 2 735 555 380 22 13 chr6 19662338 19662567 -129854470 - ORR1E LTR MaLR -126 233 3 2 735 768 190 27 10 chr6 19662669 19662967 -129854070 + (TA)n Simple_repeat Simple_repeat 1 303 0 2 735 257 91 60 15 chr6 19662995 19663062 -129853975 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 2 735 269 109 22 0 chr6 19663088 19663134 -129853903 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 2 735 21 0 0 0 chr6 19663471 19663492 -129853545 + AT_rich Low_complexity Low_complexity 1 21 0 2 735 28 79 0 0 chr6 19663523 19663586 -129853451 + AT_rich Low_complexity Low_complexity 1 63 0 2 735 24203 130 9 25 chr6 19663974 19669369 -129847668 + L1_Mus1 LINE L1 217 5462 -421 2 735 1130 56 7 0 chr6 19669369 19669513 -129847524 + B1_Mm SINE Alu 3 147 0 2 735 24203 85 12 5 chr6 19669513 19670634 -129846403 + L1_Mus1 LINE L1 5463 6567 0 2 735 2806 236 44 52 chr6 19670686 19671274 -129845763 + RLTR40 LTR ERVK 7 597 -220 2 735 423 0 0 0 chr6 19671274 19671321 -129845716 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 735 2806 236 44 52 chr6 19671321 19671524 -129845513 + RLTR40 LTR ERVK 598 792 -25 2 735 21 71 0 0 chr6 19671954 19671996 -129845041 + AT_rich Low_complexity Low_complexity 1 42 0 2 735 1184 227 25 78 chr6 19672071 19672468 -129844569 + RLTR20C LTR ERVK 59 434 -100 2 735 471 18 0 0 chr6 19672472 19672528 -129844509 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 735 6884 117 24 1 chr6 19672543 19673735 -129843302 - Lx LINE L1 -2 6652 5433 2 735 230 345 8 83 chr6 19673735 19673759 -129843278 + RLTR20C LTR ERVK 441 459 -92 2 735 618 26 0 0 chr6 19673759 19673835 -129843202 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 735 287 258 53 63 chr6 19673835 19673930 -129843107 + RLTR20C LTR ERVK 470 563 0 2 735 21 57 0 0 chr6 19674043 19674078 -129842959 + AT_rich Low_complexity Low_complexity 1 35 0 2 735 2014 280 78 16 chr6 19674222 19675379 -129841658 - Lx6 LINE L1 -2 7458 6229 2 735 1458 203 35 35 chr6 19675375 19675822 -129841215 - L1_Mur3 LINE L1 -2385 3501 3055 2 735 657 25 0 0 chr6 19675822 19675901 -129841136 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 735 1090 231 94 52 chr6 19675901 19676407 -129840630 - L1_Mur3 LINE L1 -5800 1286 861 2 735 213 65 0 0 chr6 19676598 19676629 -129840408 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 735 192 40 0 0 chr6 19679683 19679708 -129837329 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 735 345 24 0 0 chr6 19679708 19679749 -129837288 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 735 615 62 0 0 chr6 19679809 19679889 -129837148 + (TCC)n Simple_repeat Simple_repeat 2 81 0 2 735 2711 102 26 1 chr6 19680046 19680436 -129836601 - L1_Mus3 LINE L1 -256 6382 5985 2 735 233 97 0 0 chr6 19680428 19680459 -129836578 - L1_Mus3 LINE L1 -717 5921 5891 2 735 583 106 62 0 chr6 19680459 19680572 -129836465 + L1_Mus4 LINE L1 6509 6628 -8 2 735 25 51 0 0 chr6 19680572 19680611 -129836426 + AT_rich Low_complexity Low_complexity 1 39 0 2 735 370 325 109 50 chr6 19680635 19680856 -129836181 - MTD LTR MaLR -146 273 22 2 735 225 0 0 0 chr6 19681262 19681287 -129835750 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 735 226 367 9 27 chr6 19681324 19681436 -129835601 - PB1D10 SINE Alu -7 110 1 2 735 24 32 0 0 chr6 19682065 19682096 -129834941 + AT_rich Low_complexity Low_complexity 1 31 0 2 735 908 225 87 9 chr6 19682159 19682388 -129834649 + RMER4A LTR ERVK 118 364 -102 2 735 1020 266 14 26 chr6 19682388 19682717 -129834320 - RMER19B LTR ERVK 0 902 298 2 735 183 42 0 0 chr6 19682717 19682741 -129834296 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 735 900 267 18 115 chr6 19682741 19682827 -129834210 - RMER19B LTR ERVK -314 297 153 2 735 887 198 60 109 chr6 19682847 19683131 -129833906 - RMER19B LTR ERVK -341 270 1 2 735 376 200 128 43 chr6 19683131 19683216 -129833821 + RMER4A LTR ERVK 372 464 -2 2 735 316 338 48 101 chr6 19683693 19683861 -129833176 - B3A SINE B2 -1 197 39 2 735 268 337 163 0 chr6 19683995 19684093 -129832944 + PB1D10 SINE Alu 3 116 -1 2 735 219 36 0 0 chr6 19684190 19684218 -129832819 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 735 7839 54 0 3 chr6 19684457 19685785 -129831252 - L1Md_F2 LINE L1 -12 6570 5249 2 735 1409 197 93 44 chr6 19687070 19687373 -129829664 + ORR1C2 LTR MaLR 1 324 -60 2 735 4456 40 0 38 chr6 19687373 19687947 -129829090 + L1Md_F2 LINE L1 6017 6568 -14 2 735 360 0 0 0 chr6 19687953 19687993 -129829044 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 2 735 1409 197 93 44 chr6 19687993 19688048 -129828989 + ORR1C2 LTR MaLR 329 383 -1 2 735 348 127 0 0 chr6 19688210 19688265 -129828772 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 735 38 39 0 0 chr6 19689035 19689087 -129827950 + AT_rich Low_complexity Low_complexity 1 52 0 2 735 26 0 0 0 chr6 19689384 19689410 -129827627 + AT_rich Low_complexity Low_complexity 1 26 0 2 735 555 322 0 19 chr6 19689415 19689570 -129827467 - RSINE1 SINE B4 -2 163 12 2 735 3329 25 5 0 chr6 19689604 19689998 -129827039 + L1Md_F2 LINE L1 6186 6581 -1 2 735 1916 171 3 28 chr6 19690182 19690537 -129826500 + Lx3C LINE L1 6629 6974 -2 2 735 42 16 0 31 chr6 19690885 19690900 -129826137 + AT_rich Low_complexity Low_complexity 1 14 0 2 735 1162 6 211 0 chr6 19690900 19691056 -129825981 + B2_Mm1a SINE B2 2 190 -3 2 735 42 16 0 31 chr6 19691056 19691104 -129825933 + AT_rich Low_complexity Low_complexity 1 48 0 2 735 378 0 0 0 chr6 19691286 19691328 -129825709 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 2 735 321 102 0 0 chr6 19691610 19691659 -129825378 + Lx3A LINE L1 6924 6972 -9 2 735 1502 154 7 131 chr6 19692066 19692279 -129824758 - RMER17C LTR ERVK -8 402 219 2 735 513 0 0 0 chr6 19692279 19692336 -129824701 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 735 1502 167 10 123 chr6 19692336 19692612 -129824425 - RMER17C LTR ERVK -524 434 16 2 735 425 323 38 38 chr6 19692776 19693014 -129824023 - RLTR42-int LTR ERVK -4122 1400 1163 2 735 1468 271 82 59 chr6 19693226 19693786 -129823251 - RMER15 LTR ERVL 0 575 3 2 735 350 360 81 66 chr6 19693803 19694062 -129822975 - B4 SINE B4 -16 276 14 2 735 1705 208 19 69 chr6 19694068 19694208 -129822829 - RMER10B LTR ERVL 0 398 266 2 735 273 57 0 0 chr6 19694208 19694243 -129822794 + (ATG)n Simple_repeat Simple_repeat 3 37 0 2 735 1705 208 19 69 chr6 19694243 19694521 -129822516 - RMER10B LTR ERVL -133 265 1 2 735 22 35 0 0 chr6 19694599 19694628 -129822409 + AT_rich Low_complexity Low_complexity 1 29 0 2 735 1422 191 15 0 chr6 19694726 19694998 -129822039 + Lx2 LINE L1 6722 6997 0 2 735 184 170 19 19 chr6 19695112 19695166 -129821871 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 3 735 211 115 37 37 chr6 19695182 19695236 -129821801 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 735 248 263 41 21 chr6 19695236 19695333 -129821704 - Lx9 LINE L1 -142 7502 7404 3 735 1156 68 7 0 chr6 19696710 19696856 -129820181 + B1_Mm SINE Alu 1 147 0 3 735 184 103 86 0 chr6 19696856 19696914 -129820123 + A-rich Low_complexity Low_complexity 5 67 0 3 735 360 219 35 53 chr6 19697815 19697984 -129819053 + Lx9 LINE L1 7469 7634 -10 3 735 543 31 0 0 chr6 19698162 19698227 -129818810 + (TC)n Simple_repeat Simple_repeat 1 65 0 3 735 280 0 24 24 chr6 19698399 19698440 -129818597 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 735 2227 65 31 0 chr6 19698467 19698761 -129818276 - L1_Mus1 LINE L1 -1 6566 6264 3 735 243 127 0 45 chr6 19698936 19699002 -129818035 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 3 735 23 0 0 0 chr6 19699269 19699292 -129817745 + AT_rich Low_complexity Low_complexity 1 23 0 3 735 465 235 32 91 chr6 19699293 19699513 -129817524 - Lx9 LINE L1 -49 7595 7389 3 735 21 0 0 0 chr6 19700031 19700052 -129816985 + AT_rich Low_complexity Low_complexity 1 21 0 3 735 243 125 0 0 chr6 19700362 19700402 -129816635 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 735 330 349 80 20 chr6 19700692 19700891 -129816146 - B3 SINE B2 0 216 6 3 735 296 48 24 0 chr6 19702141 19702183 -129814854 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 735 703 51 25 17 chr6 19702209 19702328 -129814709 - L1_Mus3 LINE L1 -4 6634 6515 3 735 232 248 301 52 chr6 19702434 19702573 -129814464 + MTE2b LTR MaLR 140 319 -60 3 735 1064 96 6 17 chr6 19702573 19702753 -129814284 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 3 735 232 248 301 52 chr6 19702753 19702766 -129814271 + MTE2b LTR MaLR 320 330 -49 3 735 895 262 84 72 chr6 19704995 19705921 -129811116 - RMER17B LTR ERVK -37 823 1 3 735 1469 248 95 70 chr6 19706133 19706672 -129810365 + RLTR31_Mur LTR ERVK 2 553 0 3 735 26 0 0 0 chr6 19707063 19707089 -129809948 + AT_rich Low_complexity Low_complexity 1 26 0 3 735 218 300 78 29 chr6 19707096 19707199 -129809838 + MIR SINE MIR 124 231 -31 3 735 278 188 0 34 chr6 19707509 19707597 -129809440 + (TTA)n Simple_repeat Simple_repeat 3 87 0 3 735 280 316 20 39 chr6 19707974 19708076 -129808961 - PB1D10 SINE Alu -9 108 9 3 735 22 70 0 0 chr6 19709138 19709181 -129807856 + AT_rich Low_complexity Low_complexity 1 43 0 3 735 252 178 0 0 chr6 19709310 19709355 -129807682 + MER4B-int LTR ERV1 1150 1194 -5564 3 735 763 229 31 94 chr6 19710499 19710620 -129806417 + RLTR28 LTR ERVL 1 107 -417 3 735 634 128 68 0 chr6 19710620 19710737 -129806300 - Lx2 LINE L1 -1 6996 6872 3 735 763 229 31 94 chr6 19710737 19710870 -129806167 + RLTR28 LTR ERVL 108 239 -285 3 735 327 214 12 0 chr6 19710867 19710951 -129806086 + RLTR28 LTR ERVL 380 464 -60 3 735 1097 220 8 41 chr6 19710946 19711192 -129805845 + RLTR28B LTR ERVL 244 481 0 3 735 21 71 0 0 chr6 19711362 19711404 -129805633 + AT_rich Low_complexity Low_complexity 1 42 0 3 735 23 54 0 0 chr6 19711730 19711767 -129805270 + AT_rich Low_complexity Low_complexity 1 37 0 3 735 21 0 0 0 chr6 19712086 19712107 -129804930 + AT_rich Low_complexity Low_complexity 1 21 0 3 735 736 184 171 88 chr6 19712662 19713002 -129804035 + RLTR9A LTR ERVK 1 368 0 3 735 2432 255 140 60 chr6 19713399 19713931 -129803106 - RMER21A LTR ERV1 -6 941 426 3 735 230 0 33 0 chr6 19713931 19713961 -129803076 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 735 2432 255 140 60 chr6 19713961 19714299 -129802738 - RMER21A LTR ERV1 -522 425 2 3 735 26 30 0 0 chr6 19714898 19714931 -129802106 + AT_rich Low_complexity Low_complexity 1 33 0 3 735 180 0 0 0 chr6 19716202 19716222 -129800815 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 735 1339 287 41 5 chr6 19716225 19716614 -129800423 - Lx6 LINE L1 0 7460 7058 3 735 1449 195 258 27 chr6 19716636 19717014 -129800023 + RMER6C LTR ERVK 1 690 0 3 735 2887 307 50 15 chr6 19717016 19718001 -129799036 - Lx6 LINE L1 -421 7039 6021 3 735 702 289 82 34 chr6 19719072 19719570 -129797467 + L1MCb LINE L1 625 1146 -4899 3 735 2696 116 7 2 chr6 19719730 19720137 -129796900 - Lx3_Mus LINE L1 -10 6999 6591 3 735 559 218 99 53 chr6 19720139 19720270 -129796767 + RSINE1 SINE B4 12 148 -17 3 735 314 214 45 0 chr6 19720654 19720755 -129796282 + L1MCb LINE L1 2566 2670 -3990 3 735 32 57 0 0 chr6 19721384 19721437 -129795600 + AT_rich Low_complexity Low_complexity 1 53 0 3 735 366 156 0 0 chr6 19721475 19721539 -129795498 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 735 32 43 0 0 chr6 19721774 19721820 -129795217 + AT_rich Low_complexity Low_complexity 1 46 0 3 735 612 229 41 21 chr6 19721823 19722004 -129795033 - ORR1C1 LTR MaLR -173 194 1 3 735 3689 221 136 31 chr6 19722036 19722236 -129794801 + L1_Mur3 LINE L1 2428 2611 -3269 3 735 330 45 0 0 chr6 19722236 19722280 -129794757 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 735 4001 221 129 29 chr6 19722280 19723409 -129793628 + L1_Mur3 LINE L1 2612 3890 -1990 3 735 2355 246 17 14 chr6 19723420 19723999 -129793038 - Lx4B LINE L1 0 7058 6130 3 735 3309 26 5 0 chr6 19724240 19724628 -129792409 + RLTR10 LTR ERVK 1 390 0 3 735 16071 30 9 38 chr6 19724628 19726020 -129791017 + RLTR10-int LTR ERVK 1 1346 -641 3 735 221 0 35 0 chr6 19726020 19726049 -129790988 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 735 16071 29 9 38 chr6 19726049 19726669 -129790368 + RLTR10-int LTR ERVK 1347 1983 -4 3 735 3289 26 5 0 chr6 19726671 19727057 -129789980 + RLTR10 LTR ERVK 1 388 -2 3 735 1077 183 27 9 chr6 19727544 19727765 -129789272 + L1_Mur3 LINE L1 3857 4081 -1799 3 735 1516 206 38 102 chr6 19727762 19728043 -129788994 + L1_Mur3 LINE L1 4945 5195 -685 3 735 356 0 0 22 chr6 19728043 19728088 -129788949 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3 735 1516 206 38 102 chr6 19728088 19728286 -129788751 + L1_Mur3 LINE L1 5196 5393 -487 3 735 351 0 0 0 chr6 19728489 19728528 -129788509 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 735 537 16 0 0 chr6 19728528 19728589 -129788448 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 735 22 88 0 0 chr6 19728941 19728998 -129788039 + AT_rich Low_complexity Low_complexity 1 57 0 3 735 34 42 0 0 chr6 19729315 19729363 -129787674 + AT_rich Low_complexity Low_complexity 1 48 0 3 735 29 28 0 0 chr6 19729427 19729463 -129787574 + AT_rich Low_complexity Low_complexity 1 36 0 3 735 1345 267 35 27 chr6 19729824 19729964 -129787073 + MTC LTR MaLR 18 156 -265 3 735 2521 118 36 7 chr6 19729964 19730375 -129786662 - L1_Mus4 LINE L1 -6 6630 6208 3 735 1345 267 35 27 chr6 19730375 19730635 -129786402 + MTC LTR MaLR 157 421 0 3 735 22 0 0 0 chr6 19730848 19730870 -129786167 + AT_rich Low_complexity Low_complexity 1 22 0 3 735 416 19 19 0 chr6 19732663 19732716 -129784321 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 735 432 266 108 105 chr6 19732913 19733245 -129783792 - RLTR15 LTR ERVK -16 343 11 3 735 586 331 16 25 chr6 19733791 19734065 -129782972 - Lx5 LINE L1 -783 6913 6455 3 735 2244 134 56 40 chr6 19734136 19734531 -129782506 + RLTR44A LTR ERVK 1 401 -4 3 735 316 196 0 0 chr6 19734536 19734592 -129782445 + RLTR44-int LTR ERVK 1 56 -2756 3 735 639 98 0 0 chr6 19734885 19734977 -129782060 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 3 735 641 214 0 42 chr6 19734973 19735265 -129781772 + GA-rich Low_complexity Low_complexity 1 279 0 3 735 858 47 0 0 chr6 19735273 19735380 -129781657 + (GAGAA)n Simple_repeat Simple_repeat 4 110 0 3 735 518 175 17 62 chr6 19735402 19735604 -129781433 + RLTR44-int LTR ERVK 803 978 -1834 3 735 4171 295 46 42 chr6 19735797 19739245 -129777792 + RLTR44-int LTR ERVK 659 3779 -2763 3 735 4798 67 0 10 chr6 19739472 19740077 -129776960 + RLTR44-int LTR ERVK 2214 2812 0 3 735 2391 133 57 10 chr6 19740077 19740464 -129776573 + RLTR44A LTR ERVK 1 405 0 3 735 210 143 0 0 chr6 19740884 19740919 -129776118 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 735 3277 113 2 35 chr6 19743458 19743972 -129773065 + Lx LINE L1 6149 6645 -9 3 735 510 151 0 0 chr6 19744575 19744681 -129772356 + (TG)n Simple_repeat Simple_repeat 2 107 0 3 735 276 372 99 0 chr6 19744770 19744961 -129772076 - MER31A LTR ERV1 -132 353 144 3 735 302 391 87 28 chr6 19745307 19745391 -129771646 + LTR16B2 LTR ERVL 6 97 -365 3 735 441 0 0 0 chr6 19745391 19745440 -129771597 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 3 735 302 391 87 28 chr6 19745440 19745573 -129771464 + LTR16B2 LTR ERVL 98 236 -226 3 735 21 57 0 0 chr6 19746879 19746914 -129770123 + AT_rich Low_complexity Low_complexity 1 35 0 3 735 680 335 92 9 chr6 19747541 19748001 -129769036 - Lx6 LINE L1 -26 7434 6573 3 735 21 57 0 0 chr6 19748002 19748037 -129769000 + AT_rich Low_complexity Low_complexity 1 35 0 3 735 25 0 0 0 chr6 19748137 19748162 -129768875 + AT_rich Low_complexity Low_complexity 1 25 0 3 735 215 156 22 22 chr6 19748621 19748667 -129768370 + CT-rich Low_complexity Low_complexity 1 46 0 3 735 31643 94 6 9 chr6 19748943 19753773 -129763264 + L1Md_F2 LINE L1 228 5234 -649 3 735 420 20 0 0 chr6 19753773 19753822 -129763215 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 735 31643 78 4 4 chr6 19753822 19754164 -129762873 + L1Md_F2 LINE L1 5235 5583 -300 3 735 7570 69 2 1 chr6 19754165 19755148 -129761889 + L1Md_F2 LINE L1 5587 6570 -12 3 735 315 0 0 0 chr6 19755357 19755392 -129761645 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 735 1508 132 39 0 chr6 19757280 19757514 -129759523 - L1_Mm LINE L1 -194 5689 5447 3 735 540 0 0 0 chr6 19757674 19757734 -129759303 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 735 7518 75 3 13 chr6 19757789 19758634 -129758403 - L1_Mus1 LINE L1 0 6567 5783 3 735 942 120 21 0 chr6 19758634 19758776 -129758261 - B1_Mm SINE Alu 0 147 3 3 735 7518 103 7 62 chr6 19758776 19759850 -129757187 - L1_Mus1 LINE L1 -92 5791 4721 3 735 1833 106 3 62 chr6 19759850 19760171 -129756866 - L1_Mm LINE L1 -597 5286 4985 3 735 6503 87 1 26 chr6 19760164 19761079 -129755958 + L1_Mus2 LINE L1 5675 6566 0 3 735 1963 97 61 6 chr6 19761408 19761719 -129755318 + L1_Mus3 LINE L1 6311 6638 0 3 735 568 286 80 63 chr6 19762395 19762746 -129754291 - MMTV-int LTR ERVK -1975 5278 4922 3 735 270 317 0 28 chr6 19763166 19763273 -129753764 - Lx9 LINE L1 -393 7251 7148 3 735 24 85 0 0 chr6 19763425 19763484 -129753553 + AT_rich Low_complexity Low_complexity 1 59 0 3 735 229 302 51 23 chr6 19763541 19763717 -129753320 - L1MC1 LINE L1 -270 7612 7432 3 735 359 292 16 40 chr6 19763808 19763933 -129753104 + MTE-int LTR MaLR 350 471 -1109 3 735 325 367 28 35 chr6 19764013 19764158 -129752879 + B3A SINE B2 36 179 -37 3 735 928 329 34 46 chr6 19764203 19764724 -129752313 + MTE-int LTR MaLR 637 1232 -348 3 735 434 120 13 0 chr6 19764724 19764799 -129752238 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 735 574 333 48 58 chr6 19764799 19764915 -129752122 + MTE-int LTR MaLR 1233 1344 -236 3 735 417 109 0 0 chr6 19764923 19764987 -129752050 + (TATG)n Simple_repeat Simple_repeat 1 64 0 3 735 1026 103 21 0 chr6 19765110 19765255 -129751782 + B1_Mus1 SINE Alu 1 148 0 3 735 303 344 61 36 chr6 19765313 19765509 -129751528 - L1MC1 LINE L1 -1433 6352 6152 3 735 659 297 26 53 chr6 19765609 19765950 -129751087 - L1MC1 LINE L1 -343 5990 5659 3 735 22 35 0 0 chr6 19766066 19766095 -129750942 + AT_rich Low_complexity Low_complexity 1 29 0 3 735 247 308 8 17 chr6 19766242 19766361 -129750676 - Lx6 LINE L1 -1303 6157 6040 4 735 252 0 0 0 chr6 19768006 19768034 -129749003 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 735 216 111 0 0 chr6 19768257 19768293 -129748744 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 735 480 18 0 0 chr6 19768293 19768349 -129748688 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 735 242 234 128 13 chr6 19768841 19768919 -129748118 - L1MA6 LINE L1 -7 6293 6207 4 735 272 27 27 0 chr6 19769000 19769037 -129748000 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 735 351 321 85 48 chr6 19769044 19769375 -129747662 - L1MA6 LINE L1 -179 6121 5779 4 735 23 0 0 0 chr6 19769497 19769520 -129747517 + AT_rich Low_complexity Low_complexity 1 23 0 4 735 356 196 266 0 chr6 19770639 19770797 -129746240 + Lx9 LINE L1 7439 7638 -6 4 735 354 267 39 29 chr6 19770841 19770945 -129746092 + MTD LTR MaLR 15 119 -300 4 735 25 31 0 0 chr6 19770950 19770982 -129746055 + AT_rich Low_complexity Low_complexity 1 32 0 4 735 2355 134 32 22 chr6 19770983 19771395 -129745642 - Lx3A LINE L1 -9 6972 6557 4 735 372 309 123 24 chr6 19771683 19771864 -129745173 + B3A SINE B2 3 207 -9 4 735 218 403 13 0 chr6 19772833 19772910 -129744127 - ID4 SINE ID 0 83 6 4 735 452 353 60 40 chr6 19773866 19774117 -129742920 - MLT1E LTR MaLR -8 645 390 4 735 380 324 14 21 chr6 19774179 19774324 -129742713 - MLT1E LTR MaLR -398 256 113 4 735 207 139 0 0 chr6 19774562 19774598 -129742439 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 735 186 97 0 0 chr6 19775800 19775822 -129741215 + (T)n Simple_repeat Simple_repeat 1 22 0 4 735 1276 20 0 0 chr6 19775822 19775969 -129741068 - B1_Mm SINE Alu 0 147 1 4 735 186 97 0 0 chr6 19775969 19775977 -129741060 + (T)n Simple_repeat Simple_repeat 1 8 0 4 735 23 0 0 0 chr6 19776105 19776128 -129740909 + AT_rich Low_complexity Low_complexity 1 23 0 4 735 189 82 0 58 chr6 19776725 19776777 -129740260 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 4 735 600 306 120 50 chr6 19776949 19777266 -129739771 - Lx6 LINE L1 -26 7434 7096 4 735 2922 31 17 0 chr6 19777342 19777696 -129739341 - L1Md_T LINE L1 0 6582 6223 4 735 487 314 28 17 chr6 19777711 19777889 -129739148 - Lx6 LINE L1 -365 6685 6506 4 735 8678 237 112 40 chr6 19777910 19779684 -129737353 - Lx6 LINE L1 -675 6375 4240 4 735 228 306 111 40 chr6 19779684 19779810 -129737227 - RMER6A LTR ERVK -568 188 54 4 735 8678 237 112 40 chr6 19779810 19781618 -129735419 - Lx6 LINE L1 -675 4239 2061 4 735 396 0 0 0 chr6 19781618 19781662 -129735375 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 735 8678 238 53 30 chr6 19781662 19782797 -129734240 - Lx6 LINE L1 -3817 2060 900 4 735 458 220 9 44 chr6 19783016 19783130 -129733907 - RMER6C LTR ERVK -580 110 1 4 735 341 366 155 5 chr6 19783967 19784368 -129732669 + L3 LINE CR1 4014 4474 -15 4 735 185 61 0 83 chr6 19785055 19785091 -129731946 + (T)n Simple_repeat Simple_repeat 1 33 0 4 735 762 161 20 0 chr6 19785091 19785240 -129731797 - Lx3A LINE L1 0 6981 6830 4 735 1359 229 26 112 chr6 19785958 19786342 -129730695 + Lx7 LINE L1 6426 6776 -920 4 735 1034 61 0 0 chr6 19786357 19786488 -129730549 + B1_Mm SINE Alu 17 147 0 4 735 194 81 27 0 chr6 19786504 19786541 -129730496 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 4 735 2324 247 58 25 chr6 19786541 19787229 -129729808 + Lx7 LINE L1 6780 7490 -206 4 735 3804 105 13 0 chr6 19787527 19788079 -129728958 - L1_Mus1 LINE L1 -11 6556 5998 4 735 2789 56 17 0 chr6 19788079 19788424 -129728613 - L1Md_F2 LINE L1 -14 6570 6220 4 735 3420 78 14 5 chr6 19788424 19789000 -129728037 - L1Md_F2 LINE L1 -583 5999 5418 4 735 3238 81 0 21 chr6 19788995 19789460 -129727577 + L1_Mm LINE L1 4160 4614 -1269 4 735 18255 21 0 1 chr6 19789460 19791591 -129725446 + L1Md_T LINE L1 3457 5586 -297 4 91 8421 33 0 0 chr6 19791591 19792587 -129724450 + L1Md_T LINE L1 5587 6582 0 4 736 393 129 0 0 chr6 19792604 19792673 -129724364 + L1_Mm LINE L1 4595 4660 -1223 4 736 880 353 37 56 chr6 19792761 19793200 -129723837 - Lx8 LINE L1 -268 7205 6769 4 736 710 299 19 5 chr6 19793200 19793408 -129723629 + B3 SINE B2 4 214 -2 4 736 880 353 37 56 chr6 19793408 19793484 -129723553 - Lx8 LINE L1 -705 6768 6700 4 736 398 345 0 14 chr6 19793500 19793644 -129723393 - MTD LTR MaLR -218 201 60 4 736 544 198 6 6 chr6 19795335 19795372 -129721665 + polypyrimidine Low_complexity Low_complexity 127 163 0 4 736 1453 17 0 11 chr6 19795372 19795554 -129721483 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 736 544 198 6 6 chr6 19795554 19795590 -129721447 + polypyrimidine Low_complexity Low_complexity 91 126 0 4 736 1412 23 17 0 chr6 19795590 19795764 -129721273 + (TCTCCC)n Simple_repeat Simple_repeat 4 180 0 4 736 544 198 6 6 chr6 19795764 19795852 -129721185 + polypyrimidine Low_complexity Low_complexity 2 90 0 4 736 22 70 0 0 chr6 19795922 19795965 -129721072 + AT_rich Low_complexity Low_complexity 1 43 0 4 736 24 0 0 0 chr6 19797466 19797490 -129719547 + AT_rich Low_complexity Low_complexity 1 24 0 4 736 232 48 23 23 chr6 19798005 19798048 -129718989 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 736 980 117 14 0 chr6 19798057 19798202 -129718835 - B1_Mus1 SINE Alu -1 147 1 4 736 279 79 0 0 chr6 19798257 19798295 -129718742 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4 736 6879 93 9 5 chr6 19798304 19799272 -129717765 - L1_Mus2 LINE L1 -2 6564 5593 4 736 233 31 31 0 chr6 19799265 19799297 -129717740 - Lx2 LINE L1 -1275 5722 5690 4 736 7468 115 2 7 chr6 19799293 19800422 -129716615 + L1_Mm LINE L1 4296 5418 -465 4 736 1437 210 39 6 chr6 19801097 19801408 -129715629 - RMER1B Other Other -4 1062 742 4 736 7996 153 15 18 chr6 19801955 19803351 -129713686 - Lx2 LINE L1 0 6997 5606 4 736 266 81 0 0 chr6 19803355 19803392 -129713645 + L1_Mm LINE L1 5454 5490 -393 4 736 586 0 27 0 chr6 19803636 19803710 -129713327 + (TTTTG)n Simple_repeat Simple_repeat 2 77 0 4 736 1011 109 0 0 chr6 19803710 19803848 -129713189 - B1_Mus2 SINE Alu -9 138 1 4 736 273 118 59 0 chr6 19804167 19804235 -129712802 - L1_Mur1 LINE L1 -558 5328 5257 4 736 411 145 0 0 chr6 19804323 19804392 -129712645 + (T)n Simple_repeat Simple_repeat 1 69 0 4 736 23 33 0 0 chr6 19804470 19804500 -129712537 + AT_rich Low_complexity Low_complexity 1 30 0 4 736 288 77 0 0 chr6 19804653 19804692 -129712345 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 736 900 286 24 46 chr6 19804702 19805157 -129711880 - L1_Rod LINE L1 -1297 4550 4106 4 736 225 283 0 0 chr6 19805161 19805214 -129711823 + MTD LTR MaLR 111 163 -256 4 736 7314 44 14 1 chr6 19805214 19806096 -129710941 - RLTR13B1 LTR ERVK 0 893 1 4 736 1057 272 133 19 chr6 19806233 19806593 -129710444 - MTD LTR MaLR -8 411 11 4 736 288 0 0 0 chr6 19808271 19808303 -129708734 + (T)n Simple_repeat Simple_repeat 1 32 0 4 736 348 24 0 0 chr6 19809320 19809361 -129707676 + (T)n Simple_repeat Simple_repeat 1 41 0 4 736 707 292 35 16 chr6 19809361 19809618 -129707419 + Lx7 LINE L1 6144 6405 -1291 4 736 507 231 46 53 chr6 19809620 19809771 -129707266 + ORR1C2 LTR MaLR 1 150 -234 4 736 5434 70 28 21 chr6 19809772 19809826 -129707211 - L1Md_F2 LINE L1 0 6582 6536 4 736 2985 23 3 0 chr6 19809826 19810171 -129706866 + ORR1A0 LTR MaLR 1 346 0 4 736 13720 62 7 1 chr6 19810171 19811952 -129705085 + ORR1A0-int LTR MaLR 1 1792 0 4 736 2752 33 52 0 chr6 19811952 19812281 -129704756 + ORR1A0 LTR MaLR 1 346 0 4 736 5434 70 28 21 chr6 19812281 19812986 -129704051 - L1Md_F2 LINE L1 -47 6535 5818 4 736 483 212 16 8 chr6 19813005 19813133 -129703904 - Lx3C LINE L1 -117 6941 6736 4 736 4065 186 35 7 chr6 19813161 19814076 -129702961 + Lx4B LINE L1 5017 5961 -1097 4 736 1449 131 79 32 chr6 19814080 19814357 -129702680 - RLTR9D LTR ERVK -113 290 1 4 736 1403 246 26 34 chr6 19814369 19814748 -129702289 + Lx4B LINE L1 6263 6638 -420 4 736 815 157 0 6 chr6 19815245 19815425 -129701612 + CT-rich Low_complexity Low_complexity 2 180 0 4 736 365 347 41 6 chr6 19815717 19815888 -129701149 + LTR79 LTR ERVL 279 455 -72 4 736 237 364 36 8 chr6 19815962 19816100 -129700937 - MER63A DNA AcHobo -14 196 52 4 736 27 81 0 0 chr6 19816197 19816259 -129700778 + AT_rich Low_complexity Low_complexity 1 62 0 4 736 364 235 52 68 chr6 19816274 19816466 -129700571 - RMER17C LTR ERVK -133 277 89 4 736 2813 256 127 12 chr6 19816493 19817464 -129699573 - Lx6 LINE L1 -5 7455 6374 4 736 327 49 0 0 chr6 19817602 19817643 -129699394 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 736 432 0 0 0 chr6 19817643 19817690 -129699347 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 736 3357 35 2 2 chr6 19817691 19818087 -129698950 + MTA_Mm LTR MaLR 1 396 0 4 736 251 253 57 11 chr6 19818683 19818771 -129698266 - Lx9 LINE L1 -176 7468 7377 4 736 405 133 0 0 chr6 19820134 19820209 -129696828 + (TC)n Simple_repeat Simple_repeat 2 76 0 4 736 717 45 0 0 chr6 19820212 19820301 -129696736 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 736 2063 173 58 36 chr6 19820376 19820786 -129696251 + RMER12 LTR ERVK 1 419 -903 4 736 2281 193 107 115 chr6 19820786 19821305 -129695732 + RMER19C LTR ERVK 1 503 -108 4 736 1406 194 24 6 chr6 19821305 19821637 -129695400 - L1Md_A LINE L1 0 6582 6245 4 736 2281 193 107 115 chr6 19821637 19821727 -129695310 + RMER19C LTR ERVK 504 605 -6 4 736 2964 197 15 46 chr6 19821729 19822398 -129694639 + MurERV4_19-int LTR ERVK 4777 5424 -356 4 736 314 218 112 75 chr6 19822398 19822532 -129694505 + RMER4A LTR ERVK 323 461 -5 4 736 1069 232 67 22 chr6 19822551 19822820 -129694217 - RMER6C LTR ERVK -363 327 47 4 736 378 0 0 0 chr6 19822824 19822866 -129694171 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 736 1247 288 65 7 chr6 19823956 19824390 -129692647 - Lx6 LINE L1 -847 6613 6155 4 736 278 300 0 0 chr6 19824399 19824479 -129692558 + Lx6 LINE L1 6626 6705 -755 4 736 3289 196 17 18 chr6 19824478 19825134 -129691903 + Lx LINE L1 5953 6607 -47 4 736 416 245 36 7 chr6 19825222 19825362 -129691675 + Lx6 LINE L1 7315 7458 -2 4 736 419 319 63 15 chr6 19825368 19825809 -129691228 + L1M1 LINE L1 5282 5769 -528 4 736 246 32 0 0 chr6 19825813 19825844 -129691193 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 736 23 0 0 0 chr6 19826125 19826148 -129690889 + AT_rich Low_complexity Low_complexity 1 23 0 4 736 396 59 0 0 chr6 19826268 19826319 -129690718 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 736 660 303 31 70 chr6 19826342 19826601 -129690436 - ORR1E LTR MaLR -109 250 2 4 736 567 113 0 65 chr6 19826727 19826850 -129690187 - Lx LINE L1 -4 6650 6536 5 736 291 297 102 49 chr6 19827082 19827326 -129689711 - L1M3 LINE L1 -1947 4193 3937 5 736 633 153 54 9 chr6 19827334 19827446 -129689591 + B1_Mm SINE Alu 2 118 -29 5 736 273 253 21 75 chr6 19827371 19827465 -129689572 + RLTR25B LTR ERVK 447 535 -493 5 736 1092 91 7 0 chr6 19827903 19828046 -129688991 + B1_Mus1 SINE Alu 2 145 -3 5 736 188 83 16 128 chr6 19828047 19828172 -129688865 + A-rich Low_complexity Low_complexity 4 114 0 5 736 198 0 0 0 chr6 19828052 19828074 -129688963 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 736 1131 275 20 28 chr6 19828387 19828723 -129688314 + Lx9 LINE L1 6811 7144 -500 5 736 2840 84 3 0 chr6 19828723 19829106 -129687931 + L1_Mus1 LINE L1 6184 6567 0 5 736 1131 275 20 28 chr6 19829106 19829124 -129687913 + Lx9 LINE L1 7145 7162 -482 5 736 528 122 0 0 chr6 19829124 19829206 -129687831 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 5 736 1333 246 110 11 chr6 19829206 19829681 -129687356 + Lx9 LINE L1 7120 7641 -3 5 736 20050 77 5 1 chr6 19829802 19833194 -129683843 - L1Md_F2 LINE L1 -15 6567 3163 5 736 1186 95 11 27 chr6 19833194 19833378 -129683659 + L1_Mm LINE L1 2445 2625 -3258 5 736 2771 98 5 0 chr6 19833376 19833853 -129683184 - L1Md_F2 LINE L1 -5594 1130 654 5 736 585 42 0 0 chr6 19834510 19834582 -129682455 + (TTTTC)n Simple_repeat Simple_repeat 5 76 0 5 736 1284 89 0 0 chr6 19834588 19834768 -129682269 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 5 736 954 107 0 19 chr6 19834786 19834948 -129682089 + (TTTCC)n Simple_repeat Simple_repeat 2 160 0 5 736 3865 97 57 12 chr6 19834948 19835531 -129681506 - L1_Mus3 LINE L1 -1 6637 6029 5 736 252 0 0 0 chr6 19835728 19835756 -129681281 + (TA)n Simple_repeat Simple_repeat 1 28 0 5 736 327 351 61 0 chr6 19836112 19836226 -129680811 + MLT1A LTR MaLR 12 132 -242 5 736 251 341 64 6 chr6 19836244 19836415 -129680622 + Lx7 LINE L1 5733 5913 -1783 5 736 23 0 0 0 chr6 19836606 19836629 -129680408 + AT_rich Low_complexity Low_complexity 1 23 0 5 736 939 259 9 0 chr6 19836672 19836884 -129680153 + Lx6 LINE L1 7120 7333 -127 5 736 261 0 0 0 chr6 19837746 19837775 -129679262 + (A)n Simple_repeat Simple_repeat 1 29 0 5 736 3792 159 55 26 chr6 19838324 19838544 -129678493 + L1_Mur2 LINE L1 5075 5281 -596 5 736 1299 85 5 34 chr6 19838544 19838751 -129678286 + L1Md_F2 LINE L1 6380 6580 -2 5 736 3792 159 55 26 chr6 19838751 19839292 -129677745 + L1_Mur2 LINE L1 5282 5858 -19 5 736 284 367 13 33 chr6 19841152 19841304 -129675733 - MER67C LTR ERV1 -314 397 249 5 736 219 114 0 0 chr6 19841304 19841339 -129675698 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 5 736 263 270 53 13 chr6 19841460 19841535 -129675502 - ID4_ SINE ID -3 80 3 5 736 432 0 0 0 chr6 19843466 19843514 -129673523 + (TTTTA)n Simple_repeat Simple_repeat 5 52 0 5 736 32 26 0 0 chr6 19843689 19843728 -129673309 + AT_rich Low_complexity Low_complexity 1 39 0 5 736 6911 47 6 1 chr6 19843728 19844585 -129672452 - L1Md_T LINE L1 -1 6581 5721 5 736 571 117 27 0 chr6 19844980 19845091 -129671946 + (GAAA)n Simple_repeat Simple_repeat 4 117 0 5 736 23 68 0 0 chr6 19845983 19846027 -129671010 + AT_rich Low_complexity Low_complexity 1 44 0 5 736 739 311 107 12 chr6 19846232 19846476 -129670561 + MTEa LTR MaLR 109 375 -4 5 736 363 299 75 42 chr6 19846492 19846733 -129670304 + L1MC1 LINE L1 5527 5775 -558 5 736 322 310 89 16 chr6 19846780 19846970 -129670067 + L1MC1 LINE L1 6044 6247 -86 5 736 21 36 0 0 chr6 19847154 19847182 -129669855 + AT_rich Low_complexity Low_complexity 1 28 0 5 736 22 70 0 0 chr6 19847210 19847253 -129669784 + AT_rich Low_complexity Low_complexity 1 43 0 5 736 1289 239 55 80 chr6 19847307 19847552 -129669485 + Lx4B LINE L1 845 1064 -6022 5 736 1146 68 0 0 chr6 19847552 19847698 -129669339 - B1_Mus2 SINE Alu 0 147 2 5 736 1304 207 35 26 chr6 19847698 19848124 -129668913 + Lx4B LINE L1 1065 1510 -4367 5 736 9604 165 28 3 chr6 19848108 19850649 -129666388 + Lx LINE L1 4047 6652 -2 5 736 1563 187 22 69 chr6 19850998 19851405 -129665632 + Lx4B LINE L1 1485 1872 -4005 5 736 1390 238 65 44 chr6 19851421 19851843 -129665194 - RMER19B LTR ERVK -229 673 88 5 736 690 183 8 158 chr6 19851862 19852063 -129664974 + Lx4B LINE L1 1866 2034 -3843 5 736 302 0 26 0 chr6 19852063 19852101 -129664936 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 736 690 183 8 158 chr6 19852101 19852146 -129664891 + Lx4B LINE L1 2035 2075 -3802 5 736 1303 133 74 4 chr6 19852157 19852218 -129664819 + Lx4B LINE L1 3134 3193 -2684 5 736 252 0 0 0 chr6 19852218 19852246 -129664791 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 736 1303 133 74 4 chr6 19852246 19852441 -129664596 + Lx4B LINE L1 3194 3406 -2471 5 736 6803 202 52 58 chr6 19852441 19853162 -129663875 + Lx4B LINE L1 4155 4826 -1051 5 736 1119 41 0 27 chr6 19853162 19853311 -129663726 - B1_Mm SINE Alu 0 147 3 5 736 7175 200 37 25 chr6 19853311 19855467 -129661570 + Lx4B LINE L1 4827 7053 -5 5 736 824 128 46 20 chr6 19855667 19855818 -129661219 + URR1A DNA MER1_type 72 226 0 5 736 26 0 0 0 chr6 19856399 19856425 -129660612 + AT_rich Low_complexity Low_complexity 1 26 0 5 736 458 176 152 0 chr6 19856891 19857016 -129660021 + Lx LINE L1 6507 6650 -4 5 736 1561 214 98 0 chr6 19857514 19857549 -129659488 + ORR1B1 LTR MaLR 1 36 -358 5 736 756 33 0 0 chr6 19857549 19857640 -129659397 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 736 1561 214 98 0 chr6 19857640 19857963 -129659074 + ORR1B1 LTR MaLR 37 393 -1 5 736 239 0 32 0 chr6 19858591 19858622 -129658415 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 736 413 331 30 0 chr6 19859492 19859625 -129657412 + RSINE1 SINE B4 8 144 -21 5 736 384 220 16 28 chr6 19859666 19859848 -129657189 + (CATA)n Simple_repeat Simple_repeat 1 180 0 5 736 440 89 0 12 chr6 19859871 19859951 -129657086 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 5 736 279 0 0 0 chr6 19861814 19861845 -129655192 + (TCTCTG)n Simple_repeat Simple_repeat 6 36 0 5 736 246 308 13 13 chr6 19861845 19861924 -129655113 + CT-rich Low_complexity Low_complexity 2 80 0 5 736 21 57 0 0 chr6 19862120 19862155 -129654882 + AT_rich Low_complexity Low_complexity 1 35 0 5 736 389 232 28 0 chr6 19862284 19862426 -129654611 - Lx9 LINE L1 -6 7638 7493 5 736 910 285 90 51 chr6 19862537 19862719 -129654318 - Lx8 LINE L1 -325 7148 6954 5 736 456 35 0 0 chr6 19862719 19862777 -129654260 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 736 910 285 90 51 chr6 19862777 19863063 -129653974 - Lx8 LINE L1 -520 6953 6662 5 736 1536 236 31 52 chr6 19863066 19863155 -129653882 - ORR1C1 LTR MaLR -1 377 289 5 736 1241 32 7 0 chr6 19863155 19863309 -129653728 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 5 736 3062 82 2 0 chr6 19863313 19863718 -129653319 - L1_Mus1 LINE L1 0 6567 6162 5 736 1536 236 31 52 chr6 19863718 19864008 -129653029 - ORR1C1 LTR MaLR -90 288 10 5 736 715 335 68 8 chr6 19864008 19864273 -129652764 - Lx8 LINE L1 -809 6664 6384 5 736 905 327 16 26 chr6 19864452 19864838 -129652199 - Lx8 LINE L1 -389 7084 6703 5 736 432 0 0 0 chr6 19864839 19864887 -129652150 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 736 281 265 10 19 chr6 19865237 19865341 -129651696 - Lx6 LINE L1 -2 7458 7356 5 736 462 374 32 56 chr6 19865355 19865604 -129651433 - B4A SINE B4 -49 243 1 5 736 389 330 19 38 chr6 19865667 19865878 -129651159 - Lx8 LINE L1 -838 6635 6429 5 736 423 83 0 0 chr6 19866034 19866094 -129650943 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 736 4541 97 6 1 chr6 19866492 19867202 -129649835 - MTA_Mm-int LTR MaLR -586 1377 1 5 736 2951 60 31 0 chr6 19867202 19867586 -129649451 - MTA_Mm LTR MaLR 0 396 1 5 736 215 329 28 14 chr6 19867726 19867797 -129649240 - ID2 SINE ID 0 83 12 5 736 3487 62 22 0 chr6 19867940 19868389 -129648648 + L1_Mus1 LINE L1 6107 6565 -2 5 736 2670 67 0 3 chr6 19868631 19868977 -129648060 + L1Md_F2 LINE L1 6225 6569 -13 5 736 419 286 22 33 chr6 19869004 19869185 -129647852 + L1_Rod LINE L1 2362 2540 -3307 5 736 27 29 0 0 chr6 19869719 19869753 -129647284 + AT_rich Low_complexity Low_complexity 1 34 0 5 736 282 224 40 8 chr6 19870243 19870255 -129646782 + (TA)n Simple_repeat Simple_repeat 2 13 0 5 736 345 47 0 0 chr6 19870255 19870298 -129646739 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 736 282 224 40 8 chr6 19870298 19870411 -129646626 + (TA)n Simple_repeat Simple_repeat 1 117 0 5 736 213 247 0 0 chr6 19870432 19870513 -129646524 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 736 1395 321 77 68 chr6 19870714 19871910 -129645127 + RMER1C Other Other 372 1216 -126 5 736 234 0 0 0 chr6 19871910 19871936 -129645101 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 5 736 1395 312 98 64 chr6 19871936 19872055 -129644982 + RMER1C Other Other 1217 1341 -1 5 736 360 0 0 0 chr6 19872120 19872160 -129644877 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 736 216 152 43 0 chr6 19872939 19872985 -129644052 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 5 736 1293 95 3 3 chr6 19872997 19873333 -129643704 + (TAGA)n Simple_repeat Simple_repeat 1 336 0 5 736 195 212 116 43 chr6 19873885 19873954 -129643083 + L3 LINE CR1 2828 2901 -1588 5 736 1619 164 29 10 chr6 19874060 19874374 -129642663 + L1_Mur2 LINE L1 3186 3505 -2372 5 736 2140 191 21 56 chr6 19874388 19874870 -129642167 - Lx2B LINE L1 -2 6998 6534 5 736 777 51 0 0 chr6 19874870 19874968 -129642069 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 5 736 662 149 61 0 chr6 19875098 19875212 -129641825 - L1_Mur1 LINE L1 -861 5025 4905 5 736 5584 164 49 14 chr6 19875207 19876321 -129640716 + L1_Mur2 LINE L1 3955 5108 -769 5 736 2169 291 28 23 chr6 19876316 19876601 -129640436 + Lx5 LINE L1 6387 6672 -378 5 736 6862 22 20 4 chr6 19876601 19877410 -129639627 + RLTR13B2 LTR ERVK 1 822 0 5 736 2169 291 28 23 chr6 19877410 19877779 -129639258 + Lx5 LINE L1 6673 7044 -6 5 736 258 285 16 31 chr6 19878023 19878150 -129638887 - Lx9 LINE L1 0 7644 7520 5 736 427 254 23 45 chr6 19878150 19878282 -129638755 + Lx9 LINE L1 7097 7225 -419 5 736 553 275 171 18 chr6 19878720 19878766 -129638271 + L1MB3 LINE L1 5624 5690 -493 5 736 312 102 0 0 chr6 19878766 19878815 -129638222 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 736 553 275 171 18 chr6 19878815 19879049 -129637988 + L1MB3 LINE L1 5691 5947 -236 5 736 340 216 143 187 chr6 19879270 19879452 -129637585 + B3 SINE B2 6 182 -34 5 736 333 0 0 0 chr6 19880386 19880423 -129636614 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 736 4529 112 3 1 chr6 19881396 19882052 -129634985 - L1_Mus3 LINE L1 -5 6633 5977 5 736 340 333 6 19 chr6 19882123 19882285 -129634752 - L1M2 LINE L1 -602 5689 5530 5 736 29 0 0 0 chr6 19882360 19882389 -129634648 + AT_rich Low_complexity Low_complexity 1 29 0 5 736 289 249 128 60 chr6 19882616 19882851 -129634186 + L1M3 LINE L1 4584 4834 -1306 5 736 6965 100 17 16 chr6 19882849 19884114 -129632923 + Lx3_Mus LINE L1 5269 6519 -490 5 736 504 0 0 0 chr6 19884114 19884170 -129632867 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 736 6965 111 30 32 chr6 19884170 19884364 -129632673 + Lx3_Mus LINE L1 6520 6723 -286 5 736 227 266 95 60 chr6 19884376 19884492 -129632545 + L1MD LINE L1 4883 5002 -1144 5 736 225 159 0 0 chr6 19884680 19884724 -129632313 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 736 398 305 43 58 chr6 19884736 19884875 -129632162 - RSINE1 SINE B4 -10 155 19 6 736 240 293 24 31 chr6 19884972 19885099 -129631938 - L1_Rod LINE L1 -630 5217 5092 6 736 962 292 113 6 chr6 19885155 19885482 -129631555 + ORR1D2 LTR MaLR 3 364 -6 6 736 23 0 0 0 chr6 19886122 19886145 -129630892 + AT_rich Low_complexity Low_complexity 1 23 0 6 736 1209 78 0 0 chr6 19886798 19886977 -129630060 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 736 28 0 0 0 chr6 19887708 19887736 -129629301 + AT_rich Low_complexity Low_complexity 1 28 0 6 736 6288 219 49 44 chr6 19888432 19888836 -129628201 - Lx7 LINE L1 -1667 6029 5625 6 736 1065 84 7 0 chr6 19888836 19888990 -129628047 + L1_Mus2 LINE L1 6410 6564 -2 6 736 6288 207 57 52 chr6 19888990 19890435 -129626602 - Lx7 LINE L1 -248 5632 4171 6 736 416 301 9 0 chr6 19890428 19890541 -129626496 + Lx7 LINE L1 6883 6996 -700 6 736 2437 91 21 11 chr6 19890551 19890928 -129626109 - BGLII LTR ERVK -40 381 1 6 736 522 212 18 0 chr6 19890928 19891041 -129625996 + Lx7 LINE L1 6993 7107 -589 6 736 1067 283 37 49 chr6 19891040 19891214 -129625823 + Lx7 LINE L1 7212 7383 -313 6 736 459 52 0 0 chr6 19891214 19891272 -129625765 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 736 1067 283 37 49 chr6 19891272 19891588 -129625449 + Lx7 LINE L1 7384 7696 0 6 736 224 186 17 0 chr6 19891602 19891661 -129625376 + CT-rich Low_complexity Low_complexity 2 61 0 6 736 1779 63 0 29 chr6 19891785 19892029 -129625008 + LTRIS2 LTR ERV1 1 237 -327 6 736 1110 39 0 0 chr6 19892029 19892159 -129624878 + L1Md_F3 LINE L1 5457 5586 -297 6 736 7829 47 16 0 chr6 19892160 19893170 -129623867 + L1Md_F3 LINE L1 5588 6584 0 6 736 369 75 0 0 chr6 19893175 19893228 -129623809 + (A)n Simple_repeat Simple_repeat 1 53 0 6 736 2590 70 0 0 chr6 19893228 19893570 -129623467 + LTRIS2 LTR ERV1 223 564 0 6 736 23 33 0 0 chr6 19893739 19893769 -129623268 + AT_rich Low_complexity Low_complexity 1 30 0 6 736 359 360 99 20 chr6 19895197 19895500 -129621537 - MLT1A0 LTR MaLR -13 352 26 6 736 402 282 0 0 chr6 19896546 19896631 -129620406 + RSINE1 SINE B4 11 95 -70 6 736 206 32 0 31 chr6 19896638 19896670 -129620367 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 736 3129 141 21 19 chr6 19897083 19897654 -129619383 - MusHAL1 LINE L1 -281 2431 1860 6 736 21 0 0 0 chr6 19897669 19897690 -129619347 + AT_rich Low_complexity Low_complexity 1 21 0 6 736 1112 70 0 7 chr6 19897718 19897862 -129619175 - B1_Mus1 SINE Alu -1 147 5 6 736 1621 97 15 8 chr6 19897867 19898128 -129618909 - L1_Mus3 LINE L1 -15 6623 6361 6 736 29 0 0 0 chr6 19898269 19898298 -129618739 + AT_rich Low_complexity Low_complexity 1 29 0 6 736 315 0 0 0 chr6 19898370 19898405 -129618632 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 736 829 297 85 25 chr6 19898632 19899529 -129617508 - L1MA8 LINE L1 -314 5977 5019 6 736 23 54 0 0 chr6 19899625 19899662 -129617375 + AT_rich Low_complexity Low_complexity 1 37 0 6 736 255 250 0 0 chr6 19900028 19900088 -129616949 + T-rich Low_complexity Low_complexity 1 60 0 6 736 253 316 10 30 chr6 19900090 19900191 -129616846 - RMER15 LTR ERVL -121 454 356 6 736 767 302 46 16 chr6 19900227 19900533 -129616504 - Lx6 LINE L1 0 7460 7146 6 736 360 305 138 29 chr6 19900533 19900779 -129616258 - L1MEf LINE L1 -5144 1056 784 6 736 226 219 0 0 chr6 19900898 19900962 -129616075 + (TTAG)n Simple_repeat Simple_repeat 1 64 0 6 736 855 151 0 30 chr6 19900966 19901130 -129615907 - L1_Mm LINE L1 -1425 4458 4300 6 736 6188 83 16 21 chr6 19901130 19902013 -129615024 + L1Md_F2 LINE L1 5690 6567 -15 6 736 952 88 66 0 chr6 19903106 19903242 -129613795 + B1_Mus1 SINE Alu 1 145 -3 6 736 3635 118 41 23 chr6 19903378 19903994 -129613043 - Lx3_Mus LINE L1 -625 6384 5758 6 736 3375 147 32 18 chr6 19903994 19904596 -129612441 + Lx3A LINE L1 6372 6981 0 6 736 623 340 28 23 chr6 19904641 19904855 -129612182 + B3 SINE B2 1 215 -1 6 736 252 309 0 12 chr6 19906711 19906793 -129610244 + LTR80A LTR ERVL 503 583 0 6 736 389 81 16 0 chr6 19906980 19907042 -129609995 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 736 2917 208 58 17 chr6 19907776 19908724 -129608313 + L1_Mur2 LINE L1 1048 2054 -3823 6 736 465 50 0 0 chr6 19908724 19908784 -129608253 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 736 336 24 0 0 chr6 19908785 19908826 -129608211 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 736 2917 208 80 23 chr6 19908826 19908934 -129608103 + L1_Mur2 LINE L1 2055 2159 -3718 6 736 2590 71 145 139 chr6 19908936 19909445 -129607592 + RLTR1B LTR ERV1 1 512 0 6 736 3064 79 24 22 chr6 19909445 19909897 -129607140 + RLTR1B-int LTR ERV1 1 453 -2846 6 736 4639 94 48 13 chr6 19910275 19910946 -129606091 + RLTR1B-int LTR ERV1 444 1137 -2162 6 736 423 0 0 0 chr6 19910947 19910994 -129606043 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 736 11631 50 14 3 chr6 19910994 19912422 -129604615 + RLTR1B-int LTR ERV1 1857 3299 0 6 736 2598 80 143 138 chr6 19912422 19912931 -129604106 + RLTR1B LTR ERV1 1 512 0 6 736 1132 191 17 4 chr6 19913000 19913236 -129603801 + L1_Mur2 LINE L1 2198 2436 -3441 6 736 748 170 7 0 chr6 19913241 19913388 -129603649 + L1_Mur2 LINE L1 4276 4423 -1454 6 736 5499 82 35 16 chr6 19913388 19914181 -129602856 - RLTR13C2 LTR ERVK 0 808 1 6 736 1089 151 16 0 chr6 19914181 19914367 -129602670 + L1_Mur2 LINE L1 4418 4606 -1271 6 736 3710 63 14 0 chr6 19915604 19916094 -129600943 - L1Md_F3 LINE L1 -1 6583 6087 6 736 21 0 0 0 chr6 19916411 19916432 -129600605 + AT_rich Low_complexity Low_complexity 1 21 0 6 736 321 333 88 23 chr6 19916439 19916654 -129600383 - Lx8 LINE L1 -2 7471 7243 6 736 243 0 0 0 chr6 19916730 19916757 -129600280 + (T)n Simple_repeat Simple_repeat 1 27 0 6 736 298 346 66 22 chr6 19916763 19916899 -129600138 - MTE2a LTR MaLR -87 292 151 6 736 766 200 161 0 chr6 19916912 19917092 -129599945 + URR1A DNA MER1_type 4 212 -14 6 736 1613 183 66 25 chr6 19917107 19917472 -129599565 - Lx2B LINE L1 -691 6309 5930 6 736 2783 202 27 8 chr6 19917479 19918069 -129598968 + Lx2B LINE L1 6396 6996 -4 6 736 561 30 0 0 chr6 19918083 19918150 -129598887 + (GA)n Simple_repeat Simple_repeat 2 68 0 6 736 324 0 0 0 chr6 19918162 19918198 -129598839 + (GGA)n Simple_repeat Simple_repeat 1 36 0 6 736 608 326 44 4 chr6 19918331 19918556 -129598481 - Lx8 LINE L1 -850 6623 6390 6 736 6167 112 12 24 chr6 19918588 19919621 -129597416 - L1_Mus2 LINE L1 -1447 4436 3417 6 736 9117 127 5 8 chr6 19919618 19921325 -129595712 + L1_Mus2 LINE L1 4423 6138 -428 6 736 3502 65 32 48 chr6 19921325 19921826 -129595211 - MT2_Mm LTR ERVL 0 493 1 6 736 6931 91 9 25 chr6 19921826 19922275 -129594762 + L1_Mus2 LINE L1 6139 6566 0 6 736 240 35 0 0 chr6 19922428 19922457 -129594580 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 736 26 30 0 0 chr6 19922588 19922621 -129594416 + AT_rich Low_complexity Low_complexity 1 33 0 6 736 363 380 41 18 chr6 19922698 19922867 -129594170 - B3A SINE B2 -22 176 4 6 11 35 54 0 0 chr6 19922893 19922949 -129594088 + AT_rich Low_complexity Low_complexity 1 56 0 6 737 329 322 32 70 chr6 19923080 19923267 -129593770 + RMER5 LTR ERV1 63 242 -292 6 737 659 267 47 19 chr6 19923283 19923497 -129593540 + RMER5 LTR ERV1 306 525 -9 6 737 189 213 62 62 chr6 19923576 19923641 -129593396 + MER5B DNA MER1_type 92 156 -22 6 737 1657 269 32 32 chr6 19924228 19924659 -129592378 + Lx5 LINE L1 6619 7049 -1 6 737 23 68 0 0 chr6 19925277 19925321 -129591716 + AT_rich Low_complexity Low_complexity 1 44 0 6 737 603 0 0 0 chr6 19925378 19925445 -129591592 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 737 264 59 0 0 chr6 19925445 19925478 -129591559 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 737 26 50 0 0 chr6 19926611 19926651 -129590386 + AT_rich Low_complexity Low_complexity 1 40 0 6 737 35801 69 4 6 chr6 19927305 19933485 -129583552 - L1Md_F3 LINE L1 -14 6570 452 6 737 421 314 111 26 chr6 19933877 19934067 -129582970 + B3 SINE B2 1 206 -10 6 737 183 184 0 0 chr6 19934103 19934141 -129582896 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 737 300 273 39 13 chr6 19934423 19934501 -129582536 + B4 SINE B4 2 81 -211 6 737 747 177 55 39 chr6 19934637 19934819 -129582218 - B2_Mm2 SINE B2 -10 185 1 6 737 254 232 0 0 chr6 19934961 19935017 -129582020 + CT-rich Low_complexity Low_complexity 5 60 0 6 737 23 0 0 0 chr6 19935232 19935255 -129581782 + AT_rich Low_complexity Low_complexity 1 23 0 6 737 351 0 0 0 chr6 19935264 19935303 -129581734 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 737 234 149 74 11 chr6 19936984 19937079 -129579958 + (TA)n Simple_repeat Simple_repeat 2 102 0 6 737 584 327 86 62 chr6 19937190 19937560 -129579477 - ORR1E LTR MaLR 0 370 2 6 737 717 118 0 0 chr6 19937717 19937827 -129579210 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 6 737 833 355 51 33 chr6 19937866 19938766 -129578271 - MTEb-int LTR MaLR -300 1280 311 6 737 380 312 88 0 chr6 19938783 19938908 -129578129 - MTEb-int LTR MaLR -1444 136 1 6 737 348 282 108 51 chr6 19938921 19939078 -129577959 - MTEb LTR MaLR -8 371 206 6 737 1865 192 22 44 chr6 19939134 19939543 -129577494 + Lx2 LINE L1 6597 6996 -1 6 737 24 0 0 0 chr6 19939662 19939686 -129577351 + AT_rich Low_complexity Low_complexity 1 24 0 6 737 2164 225 0 7 chr6 19939798 19940214 -129576823 - Lx5 LINE L1 -318 6732 6320 6 737 455 189 8 0 chr6 19941343 19941470 -129575567 + (CA)n Simple_repeat Simple_repeat 1 128 0 6 737 855 78 0 0 chr6 19941520 19941636 -129575401 + (TTTC)n Simple_repeat Simple_repeat 3 118 0 6 737 308 333 48 60 chr6 19941903 19942069 -129574968 + LTR68 LTR ERV1 298 461 -279 6 737 683 315 74 26 chr6 19942682 19942992 -129574045 - MLT2C1 LTR ERVL -62 335 11 6 737 350 282 12 0 chr6 19943043 19943128 -129573909 + ORR1E LTR MaLR 10 95 -264 6 737 22 35 0 0 chr6 19944060 19944089 -129572948 + AT_rich Low_complexity Low_complexity 1 29 0 6 737 38402 35 1 0 chr6 19944178 19949649 -129567388 - L1Md_T LINE L1 0 6582 1108 6 737 4790 90 67 0 chr6 19949617 19950305 -129566732 - L1Md_T LINE L1 -5411 1205 472 6 737 912 214 10 16 chr6 19950655 19950855 -129566182 + RLTR20D LTR ERVK 2 266 -297 6 737 591 160 0 0 chr6 19950855 19951011 -129566026 + GA-rich Low_complexity Low_complexity 2 157 0 6 737 806 216 107 26 chr6 19951011 19951352 -129565685 + RLTR20D LTR ERVK 143 568 0 6 737 205 156 0 0 chr6 19952399 19952431 -129564606 + CT-rich Low_complexity Low_complexity 1 32 0 6 737 369 0 0 0 chr6 19952457 19952498 -129564539 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 737 871 288 61 48 chr6 19952584 19952960 -129564077 - Lx9 LINE L1 -924 6720 6340 6 737 333 0 0 0 chr6 19952971 19953008 -129564029 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 737 415 265 209 13 chr6 19953231 19953555 -129563482 - Lx9 LINE L1 -1670 5974 5517 6 737 25 0 0 0 chr6 19953840 19953865 -129563172 + AT_rich Low_complexity Low_complexity 1 25 0 6 737 207 0 0 0 chr6 19953953 19953976 -129563061 + (A)n Simple_repeat Simple_repeat 1 23 0 6 737 27 0 0 0 chr6 19954396 19954423 -129562614 + AT_rich Low_complexity Low_complexity 1 27 0 7 737 1603 208 42 0 chr6 19954467 19954775 -129562262 - Lx3B LINE L1 0 6973 6653 7 737 6427 155 17 6 chr6 19954778 19955328 -129561709 + Lx3B LINE L1 4722 5284 -602 7 737 244 0 27 27 chr6 19955328 19955365 -129561672 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 7 737 6427 148 12 13 chr6 19955365 19956272 -129560765 + Lx3B LINE L1 5285 6185 -788 7 737 227 254 28 56 chr6 19956645 19956716 -129560321 - PB1 SINE Alu -46 81 13 7 737 814 195 20 0 chr6 19956792 19956941 -129560096 + L1_Mur2 LINE L1 245 396 -6316 7 737 585 94 10 0 chr6 19956938 19957034 -129560003 + L1_Mur2 LINE L1 761 857 -5855 7 737 3491 132 4 2 chr6 19957040 19957588 -129559449 + L1_Mus4 LINE L1 6080 6628 -8 7 737 509 347 7 0 chr6 19957602 19957749 -129559288 - B3 SINE B2 -6 210 63 7 737 3119 104 15 0 chr6 19957749 19958210 -129558827 + L1_Mm LINE L1 4162 4629 -1254 7 737 4206 129 46 0 chr6 19958220 19959030 -129558007 - L1_Mus4 LINE L1 -416 6220 5370 7 737 1548 146 7 4 chr6 19959030 19959299 -129557738 + L1_Mus4 LINE L1 6360 6629 -7 7 737 10894 176 21 46 chr6 19959311 19962738 -129554299 + Lx4A LINE L1 3710 7053 -5 7 737 32 0 0 0 chr6 19962738 19962770 -129554267 + AT_rich Low_complexity Low_complexity 1 32 0 7 737 1863 182 25 0 chr6 19964335 19964659 -129552378 + RMER19B LTR ERVK 1 332 -570 7 737 1786 188 110 33 chr6 19964666 19965056 -129551981 + RMER19B LTR ERVK 480 899 -3 7 737 23 54 0 0 chr6 19965221 19965258 -129551779 + AT_rich Low_complexity Low_complexity 1 37 0 7 737 3236 35 52 0 chr6 19965286 19965688 -129551349 - L1Md_T LINE L1 -2 6580 6158 7 737 30 27 0 0 chr6 19965896 19965933 -129551104 + AT_rich Low_complexity Low_complexity 1 37 0 7 737 689 335 108 28 chr6 19966241 19966704 -129550333 - Lx8 LINE L1 -185 7288 6789 7 737 865 323 48 23 chr6 19966698 19967094 -129549943 + Lx8 LINE L1 6442 6847 -626 7 737 222 37 0 0 chr6 19967558 19967585 -129549452 + (T)n Simple_repeat Simple_repeat 1 27 0 7 737 37926 30 0 0 chr6 19967588 19974275 -129542762 - L1Md_T LINE L1 0 6585 1 7 737 916 73 15 0 chr6 19975832 19975969 -129541068 - L1_Mus2 LINE L1 -1 6565 6427 7 737 2914 76 8 3 chr6 19975969 19976350 -129540687 + L1_Mus2 LINE L1 6040 6422 -144 7 737 22 0 0 0 chr6 19976515 19976537 -129540500 + AT_rich Low_complexity Low_complexity 1 22 0 7 737 6956 63 15 7 chr6 19977111 19978037 -129539000 + L1Md_F2 LINE L1 5645 6578 -4 7 737 288 0 0 0 chr6 19978068 19978100 -129538937 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 737 30 59 0 0 chr6 19979069 19979120 -129537917 + AT_rich Low_complexity Low_complexity 1 51 0 7 737 216 0 0 0 chr6 19979368 19979392 -129537645 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 737 488 146 11 0 chr6 19979392 19979481 -129537556 + GA-rich Low_complexity Low_complexity 2 91 0 7 737 275 271 177 57 chr6 19980845 19981037 -129536000 + L1MA9 LINE L1 5531 5745 -546 7 737 454 284 60 2 chr6 19981274 19981471 -129535566 + L1MA9 LINE L1 6022 6229 -83 7 737 351 331 110 21 chr6 19981553 19981744 -129535293 + Tigger7 DNA MER2_type 2284 2491 0 7 737 277 274 152 8 chr6 19981920 19982038 -129534999 + L1M2 LINE L1 5703 5837 -463 7 737 378 0 0 0 chr6 19983420 19983462 -129533575 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 737 1729 175 3 9 chr6 19983462 19983791 -129533246 + Lx LINE L1 6322 6648 -6 7 737 315 150 0 0 chr6 19983827 19983887 -129533150 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 7 737 1651 38 0 5 chr6 19984166 19984377 -129532660 + L1Md_F3 LINE L1 6374 6583 -1 7 737 629 71 35 0 chr6 19984467 19984580 -129532457 + (CA)n Simple_repeat Simple_repeat 2 118 0 7 737 468 0 0 0 chr6 19984580 19984631 -129532406 + (GA)n Simple_repeat Simple_repeat 2 53 0 7 737 4054 154 8 35 chr6 19985327 19986096 -129530941 - L1_Mm LINE L1 -905 4978 4231 7 737 2000 261 1 92 chr6 19986465 19987141 -129529896 - RMER6D LTR ERVK -103 617 3 7 737 201 121 0 0 chr6 19987159 19987192 -129529845 + (TA)n Simple_repeat Simple_repeat 2 34 0 7 737 30 59 0 0 chr6 19987222 19987273 -129529764 + AT_rich Low_complexity Low_complexity 1 51 0 7 737 237 132 0 0 chr6 19988203 19988241 -129528796 + (TAAG)n Simple_repeat Simple_repeat 2 39 0 7 737 4034 277 117 11 chr6 19988628 19990134 -129526903 - Lx6 LINE L1 -3 7457 5791 7 737 251 54 27 0 chr6 19990179 19990216 -129526821 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 7 737 265 293 0 0 chr6 19990216 19990298 -129526739 + L1M2 LINE L1 5678 5759 -541 7 737 3012 199 12 16 chr6 19990396 19991123 -129525914 + L1_Mur1 LINE L1 3941 4664 -1222 7 737 2847 203 57 2 chr6 19991121 19991717 -129525320 + Lx3C LINE L1 6341 6969 -7 7 737 754 150 42 85 chr6 19991788 19991977 -129525060 - L1_Mur3 LINE L1 -2384 3496 3316 7 737 5111 93 16 4 chr6 19991974 19992700 -129524337 + L1Md_F2 LINE L1 4522 5256 -627 7 737 894 94 0 0 chr6 19992700 19992817 -129524220 + L1Md_F2 LINE L1 5470 5586 -297 7 737 7385 78 3 5 chr6 19992818 19993813 -129523224 + L1Md_F2 LINE L1 5588 6580 -2 7 737 267 221 72 21 chr6 19993822 19993955 -129523082 - L1_Mur3 LINE L1 -2565 3315 3176 7 737 261 0 0 0 chr6 19993955 19993984 -129523053 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 737 267 221 72 21 chr6 19993984 19994044 -129522993 - L1_Mur3 LINE L1 -2705 3175 3113 7 737 2387 229 44 160 chr6 19994058 19994271 -129522766 - L1_Mur3 LINE L1 -3613 2267 2058 7 737 288 0 0 0 chr6 19994271 19994303 -129522734 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 737 2387 229 44 160 chr6 19994303 19994613 -129522424 - L1_Mur3 LINE L1 -3823 2057 1740 7 737 900 28 0 0 chr6 19994613 19994720 -129522317 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 7 737 2387 229 44 160 chr6 19994720 19994909 -129522128 - L1_Mur3 LINE L1 -4141 1739 1540 7 737 207 0 0 0 chr6 19994909 19994932 -129522105 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 737 1244 75 0 0 chr6 19994932 19995091 -129521946 - B2_Mm1t SINE B2 -33 160 2 7 737 2387 249 47 136 chr6 19995091 19995790 -129521247 - L1_Mur3 LINE L1 -4341 1539 865 7 737 28 29 0 0 chr6 19996165 19996200 -129520837 + AT_rich Low_complexity Low_complexity 1 35 0 7 737 413 110 14 0 chr6 19996585 19996658 -129520379 + (CAAAG)n Simple_repeat Simple_repeat 1 74 0 7 737 2632 58 65 16 chr6 19997279 19997647 -129519390 - L1Md_F2 LINE L1 -15 6567 6182 7 737 21 0 0 0 chr6 19998039 19998060 -129518977 + AT_rich Low_complexity Low_complexity 1 21 0 7 737 276 155 0 0 chr6 19998714 19998785 -129518252 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 737 777 217 0 0 chr6 19998790 19998965 -129518072 + (CATATA)n Simple_repeat Simple_repeat 3 177 0 7 737 986 240 35 70 chr6 19999575 19999673 -129517364 - ORR1B1 LTR MaLR 0 394 315 7 737 1025 72 0 0 chr6 19999673 19999812 -129517225 - L1Md_T LINE L1 0 6582 6444 7 737 986 240 35 70 chr6 19999812 20000000 -129517037 - ORR1B1 LTR MaLR -80 314 118 7 737 418 170 10 87 chr6 20000000 20000103 -129516934 - ORR1B1 LTR MaLR -297 97 3 1 737 357 24 0 0 chr6 20000643 20000685 -129516352 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 737 474 341 9 14 chr6 20000903 20001120 -129515917 - B3 SINE B2 0 216 1 3 737 23 0 0 0 chr6 20001226 20001249 -129515788 + AT_rich Low_complexity Low_complexity 1 23 0 4 737 180 0 0 0 chr6 20001497 20001517 -129515520 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 737 328 264 84 92 chr6 20001581 20001819 -129515218 - L1MCa LINE L1 -4498 2010 1775 6 737 378 0 0 0 chr6 20001834 20001876 -129515161 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 7 737 1047 88 0 0 chr6 20001876 20002024 -129515013 + (TTCCC)n Simple_repeat Simple_repeat 4 151 0 8 737 768 322 23 33 chr6 20002047 20002477 -129514560 - Lx9 LINE L1 -162 7482 7057 9 737 4301 187 107 18 chr6 20002510 20003526 -129513511 - L1_Mur2 LINE L1 -753 5124 4018 1 737 25 51 0 0 chr6 20004500 20004539 -129512498 + AT_rich Low_complexity Low_complexity 1 39 0 1 737 222 217 0 0 chr6 20005565 20005634 -129511403 + T-rich Low_complexity Low_complexity 1 69 0 1 737 430 333 13 90 chr6 20005770 20006201 -129510836 - Lx8 LINE L1 -517 7179 6795 1 737 282 267 28 56 chr6 20006203 20006346 -129510691 - Lx9 LINE L1 -2 7642 7504 1 737 777 134 13 7 chr6 20006417 20006567 -129510470 + (TA)n Simple_repeat Simple_repeat 1 151 0 1 737 276 77 0 0 chr6 20006569 20006608 -129510429 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 737 207 100 0 0 chr6 20006608 20006637 -129510400 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 737 7190 182 21 21 chr6 20006644 20008144 -129508893 + L1_Mur2 LINE L1 3791 5290 -587 1 737 2523 167 49 0 chr6 20008149 20008321 -129508716 + Lx2 LINE L1 6088 6261 -736 1 737 441 0 0 0 chr6 20008321 20008370 -129508667 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 737 2523 167 49 0 chr6 20008370 20008647 -129508390 + Lx2 LINE L1 6262 6557 -440 1 737 267 31 0 0 chr6 20008671 20008703 -129508334 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2 737 275 0 29 0 chr6 20008966 20009001 -129508036 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2 737 324 0 0 0 chr6 20009219 20009255 -129507782 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 737 207 267 0 0 chr6 20009324 20009410 -129507627 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 737 195 204 0 0 chr6 20011712 20011756 -129505281 + (TATG)n Simple_repeat Simple_repeat 1 44 0 2 737 3656 263 80 79 chr6 20011758 20014591 -129502446 + Lx7 LINE L1 4506 7353 -343 2 737 191 36 0 35 chr6 20014591 20014620 -129502417 + (TTA)n Simple_repeat Simple_repeat 1 28 0 2 737 870 318 88 27 chr6 20014620 20014746 -129502291 + Lx7 LINE L1 7354 7482 -214 2 737 304 237 12 15 chr6 20014823 20014915 -129502122 + Lx7 LINE L1 7612 7685 -11 2 737 1359 100 0 0 chr6 20015366 20015556 -129501481 + Lx3_Mus LINE L1 5686 5875 -1134 2 737 3603 121 25 13 chr6 20015556 20016161 -129500876 + Lx3_Mus LINE L1 6396 7007 -2 2 737 1109 258 51 38 chr6 20016341 20016813 -129500224 - L1_Mur3 LINE L1 -1812 4068 3591 3 737 631 295 41 67 chr6 20016824 20017093 -129499944 + Lx7 LINE L1 6739 7000 -696 3 737 213 132 0 0 chr6 20017102 20017140 -129499897 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 737 34 72 0 0 chr6 20017296 20017365 -129499672 + AT_rich Low_complexity Low_complexity 1 69 0 3 737 22 0 0 0 chr6 20018575 20018597 -129498440 + AT_rich Low_complexity Low_complexity 1 22 0 3 737 22 0 0 0 chr6 20018810 20018832 -129498205 + AT_rich Low_complexity Low_complexity 1 22 0 3 737 364 254 49 33 chr6 20019351 20019473 -129497564 + Lx7 LINE L1 6897 7020 -676 3 737 1211 272 22 11 chr6 20019488 20019845 -129497192 + Lx7 LINE L1 6976 7336 -360 3 737 653 155 60 66 chr6 20019845 20020011 -129497026 - Lx LINE L1 0 6654 6490 3 737 505 260 139 61 chr6 20020021 20020134 -129496903 + Lx7 LINE L1 7325 7456 -240 3 737 369 0 0 0 chr6 20020134 20020175 -129496862 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 737 324 0 0 0 chr6 20020175 20020210 -129496827 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 737 505 260 139 61 chr6 20020210 20020439 -129496598 + Lx7 LINE L1 7457 7694 -2 3 737 577 277 138 34 chr6 20020708 20020922 -129496115 - ORR1D2 LTR MaLR 0 370 144 4 737 22 56 0 0 chr6 20021073 20021109 -129495928 + AT_rich Low_complexity Low_complexity 1 36 0 4 737 258 235 0 0 chr6 20021261 20021342 -129495695 + (TA)n Simple_repeat Simple_repeat 1 81 0 4 737 21 36 0 0 chr6 20022072 20022100 -129494937 + AT_rich Low_complexity Low_complexity 1 28 0 4 737 29 78 0 0 chr6 20022594 20022658 -129494379 + AT_rich Low_complexity Low_complexity 1 64 0 4 737 6394 148 17 43 chr6 20024113 20025287 -129491750 + Lx3_Mus LINE L1 5844 6986 -23 4 737 252 0 0 0 chr6 20025287 20025315 -129491722 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 4 737 6394 148 17 43 chr6 20025315 20025337 -129491700 + Lx3_Mus LINE L1 6987 7008 -1 4 737 299 367 30 23 chr6 20025397 20025528 -129491509 - B3A SINE B2 -25 173 42 4 737 1082 83 0 14 chr6 20025556 20025703 -129491334 - B1_Mus2 SINE Alu -1 146 2 4 737 34 55 0 0 chr6 20026930 20026985 -129490052 + AT_rich Low_complexity Low_complexity 1 55 0 4 737 401 0 20 0 chr6 20028449 20028498 -129488539 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 737 949 122 7 26 chr6 20029329 20029480 -129487557 + B1_Mus1 SINE Alu 1 148 0 5 737 1122 221 38 33 chr6 20029802 20030126 -129486911 + L1VL4 LINE L1 707 1032 -5623 5 737 180 0 0 0 chr6 20030126 20030146 -129486891 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 737 1122 218 4 0 chr6 20030146 20030210 -129486827 + L1VL4 LINE L1 1033 1096 -5559 5 737 1830 151 80 15 chr6 20030210 20030600 -129486437 + RLTR9F LTR ERVK 1 415 0 5 737 501 263 63 105 chr6 20030602 20030754 -129486283 + ETnERV2-int LTR ERVK 3 134 -3180 5 737 2935 41 3 0 chr6 20030754 20031117 -129485920 - L1Md_F3 LINE L1 -2 6582 6219 5 737 2903 231 60 92 chr6 20031117 20031296 -129485741 + ETnERV2-int LTR ERVK 103 320 -2994 5 737 423 38 0 0 chr6 20031296 20031349 -129485688 + (TAAAA)n Simple_repeat Simple_repeat 4 56 0 5 737 5529 113 67 18 chr6 20031349 20032304 -129484733 + ETnERV2-int LTR ERVK 1083 2085 -5321 5 737 7289 134 32 10 chr6 20032329 20033575 -129483462 + ETnERV2-int LTR ERVK 2496 3769 -3637 5 737 32160 88 3 5 chr6 20033575 20039021 -129478016 + L1Md_F2 LINE L1 192 5586 -297 5 737 7857 48 3 7 chr6 20039021 20040009 -129477028 + L1Md_F2 LINE L1 5587 6570 -12 5 737 237 139 0 0 chr6 20040009 20040045 -129476992 + L1_Mur2 LINE L1 5013 5048 -829 5 737 2727 53 25 0 chr6 20040048 20040404 -129476633 + L1Md_T LINE L1 6215 6579 -3 5 737 288 0 0 0 chr6 20040430 20040462 -129476575 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 6 737 5413 196 19 46 chr6 20040491 20042084 -129474953 + ETnERV2-int LTR ERVK 5398 6422 -984 6 737 429 97 27 14 chr6 20042301 20042374 -129474663 + ETnERV2-int LTR ERVK 7331 7404 -2 6 737 1721 155 105 16 chr6 20042375 20042756 -129474281 + RLTR9F LTR ERVK 1 415 0 6 737 12316 207 24 13 chr6 20042756 20044432 -129472605 + L1_Mur1 LINE L1 1094 2804 -3082 6 737 207 0 0 0 chr6 20044432 20044455 -129472582 + (CAA)n Simple_repeat Simple_repeat 1 23 0 6 737 12316 209 26 15 chr6 20044455 20045868 -129471169 + L1_Mur1 LINE L1 2805 4216 -1670 6 737 9876 151 146 7 chr6 20045860 20048374 -129468663 - L1_Mus3 LINE L1 -336 6302 3381 6 737 492 119 48 0 chr6 20048370 20048454 -129468583 - L1_Mm LINE L1 -1687 4196 4109 6 737 5597 180 36 12 chr6 20048452 20049684 -129467353 + Lx2 LINE L1 5606 6977 -20 6 737 2397 202 13 6 chr6 20049690 20050168 -129466869 + L1_Mur1 LINE L1 4665 5145 -732 6 737 4643 246 37 6 chr6 20050178 20051330 -129465707 + Lx2B LINE L1 5808 6995 -5 6 737 648 38 0 0 chr6 20053058 20053137 -129463900 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 737 324 0 0 0 chr6 20053137 20053173 -129463864 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 737 1641 211 33 31 chr6 20053240 20053586 -129463451 + L1_Mur3 LINE L1 4218 4567 -1313 7 92 2020 218 76 41 chr6 20053586 20054150 -129462887 - RLTR31A_Mm LTR ERVK 0 584 1 7 738 1641 211 33 31 chr6 20054150 20054257 -129462780 + L1_Mur3 LINE L1 4568 4672 -1208 7 738 2683 249 30 2 chr6 20054266 20054861 -129462176 + Lx7 LINE L1 6172 6783 -913 7 738 702 0 0 0 chr6 20054979 20055057 -129461980 + (TTTTC)n Simple_repeat Simple_repeat 3 80 0 7 738 1371 62 0 0 chr6 20055057 20055234 -129461803 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 7 738 189 74 0 0 chr6 20055248 20055275 -129461762 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 7 738 379 206 41 109 chr6 20055391 20055538 -129461499 + URR1A DNA MER1_type 90 226 0 7 738 1807 285 101 61 chr6 20055549 20056379 -129460658 + Lx7 LINE L1 6815 7677 -19 7 738 1529 212 26 42 chr6 20056389 20056846 -129460191 + L1_Mur2 LINE L1 1887 2336 -3541 7 738 26635 112 32 4 chr6 20057045 20061377 -129455660 - L1_Mus1 LINE L1 -1 6566 2081 7 738 504 0 0 0 chr6 20061377 20061433 -129455604 + (TTA)n Simple_repeat Simple_repeat 2 57 0 7 738 26635 139 25 57 chr6 20061433 20062871 -129454166 - L1_Mus1 LINE L1 -3803 2080 725 7 738 346 283 16 8 chr6 20062879 20063007 -129454030 - L1_Mus1 LINE L1 -5813 803 675 7 738 251 167 90 77 chr6 20063088 20063166 -129453871 - L1VL1 LINE L1 -6065 357 279 8 738 37224 43 11 7 chr6 20063246 20070385 -129446652 - L1Md_T LINE L1 -1 6581 1 8 738 7241 173 86 6 chr6 20070545 20072577 -129444460 - Lx2A1 LINE L1 0 7008 4862 8 738 387 0 0 0 chr6 20072577 20072620 -129444417 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 738 3478 213 120 2 chr6 20072620 20072640 -129444397 - Lx2A1 LINE L1 -1022 4861 4844 8 738 560 176 25 8 chr6 20072640 20072760 -129444277 + Lx LINE L1 6533 6654 0 8 738 198 0 0 0 chr6 20073251 20073273 -129443764 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 8 738 213 279 0 0 chr6 20073750 20073811 -129443226 + T-rich Low_complexity Low_complexity 4 64 0 8 738 267 200 18 0 chr6 20074960 20075015 -129442022 - MER5A1 DNA MER1_type -8 158 103 8 738 277 306 35 109 chr6 20075277 20075479 -129441558 - B2_Mm2 SINE B2 -7 188 2 8 738 289 315 11 0 chr6 20075524 20075613 -129441424 + Lx9 LINE L1 7321 7410 -234 8 738 566 289 39 63 chr6 20075655 20075987 -129441050 - L1_Rod LINE L1 -953 4894 4571 9 738 850 310 37 41 chr6 20075979 20076493 -129440544 - L1_Rod LINE L1 -1691 4156 3645 9 738 25 0 0 0 chr6 20076978 20077003 -129440034 + AT_rich Low_complexity Low_complexity 1 25 0 9 738 1683 80 5 0 chr6 20077105 20077329 -129439708 - L1_Mus1 LINE L1 -6 6561 6337 9 738 2891 118 59 16 chr6 20077383 20077873 -129439164 + L1_Mus3 LINE L1 6128 6638 0 9 738 36629 56 22 13 chr6 20077896 20084341 -129432696 - L1Md_T LINE L1 -1 6581 118 9 738 647 191 89 5 chr6 20084337 20084527 -129432510 - L1_Mur3 LINE L1 -4107 1773 1568 9 738 2470 292 50 39 chr6 20084525 20085140 -129431897 - L1_Mur3 LINE L1 -6598 1130 527 9 738 1745 177 16 3 chr6 20085140 20085458 -129431579 - ORR1A3 LTR MaLR -4 322 1 9 738 2470 292 50 39 chr6 20085458 20085927 -129431110 - L1_Mur3 LINE L1 -7202 526 34 9 738 219 179 0 82 chr6 20086658 20086719 -129430318 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 9 738 21 57 0 0 chr6 20086734 20086769 -129430268 + AT_rich Low_complexity Low_complexity 1 35 0 9 738 352 326 0 7 chr6 20087082 20087221 -129429816 - Lx8 LINE L1 -557 6916 6779 9 738 457 218 11 24 chr6 20087377 20087492 -129429545 + B1_Mm SINE Alu 14 126 -22 1 738 458 311 66 29 chr6 20087611 20087883 -129429154 + B4A SINE B4 3 284 -8 1 738 315 0 0 0 chr6 20087903 20087938 -129429099 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 738 585 28 0 0 chr6 20087938 20088008 -129429029 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 738 1544 255 29 99 chr6 20088098 20088695 -129428342 - Lx9 LINE L1 -167 7477 6923 1 738 524 234 63 35 chr6 20088703 20088845 -129428192 - Lx9 LINE L1 -846 6798 6653 1 738 1274 271 97 3 chr6 20088884 20089343 -129427694 + Lx6 LINE L1 6732 7502 -194 1 738 1977 105 16 0 chr6 20089361 20089674 -129427363 + Lx LINE L1 5626 5943 -711 1 738 2514 80 184 0 chr6 20089674 20090075 -129426962 - IAPLTR2_Mm LTR ERVK 0 475 1 1 738 13222 70 9 5 chr6 20090077 20091872 -129425165 - IAPEz-int LTR ERVK -2 6479 4678 1 738 1797 91 8 0 chr6 20091893 20092145 -129424892 - IAPEz-int LTR ERVK -5183 2497 2244 1 738 891 67 0 0 chr6 20092140 20092259 -129424778 - IAPEz-int LTR ERVK -5004 1477 1359 1 738 3295 61 7 16 chr6 20092259 20092834 -129424203 - IAPEz-int LTR ERVK -5819 662 168 1 738 226 327 0 0 chr6 20092834 20092889 -129424148 - RLTR27 LTR ERVK -34 275 221 1 738 888 117 31 87 chr6 20092889 20093085 -129423952 - IAPEz-int LTR ERVK -6288 193 9 1 738 2514 93 164 0 chr6 20093086 20093494 -129423543 - IAPLTR2_Mm LTR ERVK 0 475 1 1 738 3388 162 70 16 chr6 20093494 20094167 -129422870 + Lx LINE L1 5938 6646 -8 1 738 505 237 12 37 chr6 20094168 20094330 -129422707 + Lx6 LINE L1 7520 7677 -19 1 738 224 122 61 0 chr6 20094711 20094760 -129422277 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 1 738 315 49 0 0 chr6 20094761 20094802 -129422235 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 738 218 170 19 19 chr6 20094802 20094856 -129422181 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 738 313 363 26 33 chr6 20094963 20095114 -129421923 - RSINE1 SINE B4 0 165 16 1 738 2924 104 0 7 chr6 20095213 20095628 -129421409 - L1_Mus1 LINE L1 0 6567 6156 1 738 2448 213 124 87 chr6 20095670 20096813 -129420224 + L1_Mur2 LINE L1 1874 3056 -2821 1 738 843 10 0 0 chr6 20096813 20096909 -129420128 + (GA)n Simple_repeat Simple_repeat 1 96 0 1 738 2448 213 124 87 chr6 20096909 20096955 -129420082 + L1_Mur2 LINE L1 3057 3106 -2771 1 738 244 200 66 13 chr6 20096972 20097048 -129419989 + L1_Mur2 LINE L1 3270 3349 -2528 1 738 1456 230 42 62 chr6 20097044 20097563 -129419474 + L1_Mur2 LINE L1 4791 5299 -578 1 738 1505 218 19 24 chr6 20097561 20097937 -129419100 + Lx2B LINE L1 6218 6591 -409 1 738 846 30 0 0 chr6 20098325 20098426 -129418611 + (GA)n Simple_repeat Simple_repeat 1 101 0 1 738 4183 152 8 25 chr6 20098749 20099787 -129417250 + L1Md_A LINE L1 217 1446 -4437 1 738 685 47 0 11 chr6 20099787 20099874 -129417163 + IAPLTR3 LTR ERVK 1 86 -240 1 738 47178 15 2 0 chr6 20099874 20105380 -129411657 + IAPLTR3-int LTR ERVK 1289 6801 -20 1 738 2932 15 0 0 chr6 20105380 20105706 -129411331 + IAPLTR3 LTR ERVK 1 326 0 1 738 26476 85 1 4 chr6 20105706 20109608 -129407429 + L1Md_A LINE L1 1441 5334 -549 1 738 230 0 0 32 chr6 20109610 20109641 -129407396 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 738 4731 83 0 16 chr6 20109665 20110372 -129406665 - L1_Mm LINE L1 -2117 3766 3071 1 738 10283 88 1 1 chr6 20110666 20112084 -129404953 + L1Md_F2 LINE L1 4169 5585 -298 1 738 7235 79 4 5 chr6 20112085 20113080 -129403957 + L1Md_F2 LINE L1 5587 6580 -2 1 738 37973 43 2 6 chr6 20114293 20120469 -129396568 - L1Md_T LINE L1 -1 6581 438 1 738 31 58 0 0 chr6 20120866 20120918 -129396119 + AT_rich Low_complexity Low_complexity 1 52 0 1 738 24 0 0 0 chr6 20120942 20120966 -129396071 + AT_rich Low_complexity Low_complexity 1 24 0 1 738 377 307 0 0 chr6 20120966 20121067 -129395970 + B3 SINE B2 2 102 -114 1 738 565 304 119 34 chr6 20121069 20121083 -129395954 + B4A SINE B4 10 23 -269 1 738 2836 97 2 10 chr6 20121083 20121499 -129395538 - L1Md_F2 LINE L1 0 6582 6170 1 738 565 304 119 34 chr6 20121499 20121719 -129395318 + B4A SINE B4 24 263 -29 1 738 1672 237 18 90 chr6 20123189 20123479 -129393558 - MTC LTR MaLR -8 413 121 1 738 3759 136 48 24 chr6 20123479 20124002 -129393035 + Lx LINE L1 6006 6518 -136 1 738 204 40 0 0 chr6 20124002 20124027 -129393010 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 1 738 3759 136 48 24 chr6 20124027 20124135 -129392902 + Lx LINE L1 6519 6650 -4 1 738 1672 237 18 90 chr6 20124135 20124289 -129392748 - MTC LTR MaLR -301 120 1 1 738 24 53 0 0 chr6 20124340 20124378 -129392659 + AT_rich Low_complexity Low_complexity 1 38 0 1 738 22 0 0 0 chr6 20124521 20124543 -129392494 + AT_rich Low_complexity Low_complexity 1 22 0 1 738 1745 33 5 0 chr6 20124838 20125053 -129391984 - MTA_Mm LTR MaLR 0 396 181 1 738 2454 58 0 21 chr6 20125054 20125386 -129391651 - L1Md_F2 LINE L1 -12 6570 6246 1 738 534 63 0 0 chr6 20125386 20125449 -129391588 + L1Md_F2 LINE L1 6181 6243 -339 1 738 1403 65 5 10 chr6 20125449 20125650 -129391387 - MTA_Mm LTR MaLR -196 200 1 1 738 273 57 0 0 chr6 20126223 20126258 -129390779 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 738 596 138 8 0 chr6 20126763 20126893 -129390144 + (TG)n Simple_repeat Simple_repeat 2 132 0 1 738 474 18 0 0 chr6 20126897 20126952 -129390085 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 738 21 0 0 0 chr6 20127062 20127083 -129389954 + AT_rich Low_complexity Low_complexity 1 21 0 1 738 227 296 40 30 chr6 20127269 20127370 -129389667 - Charlie1a DNA MER1_type -29 1426 1325 1 738 26 64 0 0 chr6 20128115 20128162 -129388875 + AT_rich Low_complexity Low_complexity 1 47 0 1 738 3698 201 102 17 chr6 20128165 20129094 -129387943 + Lx3C LINE L1 5974 7000 0 1 738 522 208 146 0 chr6 20129507 20129651 -129387386 + L1_Mur3 LINE L1 5631 5795 -85 1 738 5425 113 21 16 chr6 20129651 20131294 -129385743 + L1VL2 LINE L1 176 1826 -1789 1 738 40436 18 3 6 chr6 20132118 20139117 -129377920 - L1Md_A LINE L1 0 6582 1 1 738 233 194 83 0 chr6 20139529 20139601 -129377436 + L1M2 LINE L1 2745 2822 -3321 1 738 29 70 0 0 chr6 20139649 20139706 -129377331 + AT_rich Low_complexity Low_complexity 1 57 0 1 738 1419 292 30 52 chr6 20139728 20140302 -129376735 + Lx6 LINE L1 5779 6339 -1121 1 738 243 353 81 11 chr6 20140307 20140493 -129376544 + Lx6 LINE L1 7091 7289 -171 1 738 229 306 112 0 chr6 20140562 20140768 -129376269 + L1MA6 LINE L1 6072 6300 0 1 738 340 362 101 16 chr6 20140782 20141029 -129376008 + B4A SINE B4 2 269 -23 1 738 459 118 0 0 chr6 20141098 20141174 -129375863 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 738 1563 181 7 14 chr6 20142577 20142874 -129374163 - Lx2 LINE L1 0 6997 6703 1 738 438 101 0 0 chr6 20143140 20143209 -129373828 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 738 1702 188 65 11 chr6 20143272 20143635 -129373402 - Lx3B LINE L1 -3 7055 6597 1 738 5604 171 40 11 chr6 20143606 20143691 -129373346 + Lx3C LINE L1 5540 5634 -252 1 738 324 0 0 0 chr6 20143691 20143727 -129373310 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 738 5604 162 19 14 chr6 20143727 20144693 -129372344 + Lx3C LINE L1 5632 6602 -374 1 738 7222 111 6 8 chr6 20144707 20145887 -129371150 + L1_Mus3 LINE L1 5456 6632 -6 1 738 21 36 0 0 chr6 20145982 20146010 -129371027 + AT_rich Low_complexity Low_complexity 1 28 0 1 738 1063 310 51 16 chr6 20146190 20146560 -129370477 + Lx6 LINE L1 7069 7451 -9 1 738 285 29 0 0 chr6 20147173 20147207 -129369830 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 738 984 108 0 0 chr6 20147210 20147358 -129369679 + (GA)n Simple_repeat Simple_repeat 2 149 0 1 738 844 71 0 0 chr6 20147368 20147481 -129369556 + L1_Mus4 LINE L1 6301 6413 -223 1 738 343 367 41 34 chr6 20147727 20147983 -129369054 - Lx8 LINE L1 -209 7264 6990 1 738 1706 221 144 21 chr6 20147988 20148473 -129368564 + RMER6D LTR ERVK 1 545 -175 1 738 553 303 64 61 chr6 20148494 20148789 -129368248 - RMER2 LTR ERV1 -22 545 250 1 738 399 260 95 9 chr6 20148778 20148883 -129368154 - RMER2 LTR ERV1 -451 116 3 1 738 612 211 169 13 chr6 20148885 20149039 -129367998 + RMER6D LTR ERVK 542 719 -1 1 738 783 215 0 11 chr6 20149068 20149247 -129367790 + RMER6-int LTR ERVK 7 183 -2994 1 738 1347 181 35 14 chr6 20149252 20149538 -129367499 - RMER6C LTR ERVK -398 292 1 1 738 3332 272 26 48 chr6 20149539 20150346 -129366691 + MurERV4-int LTR ERVK 4053 4861 -399 1 738 7654 34 1 0 chr6 20150346 20151257 -129365780 + L1Md_T LINE L1 5671 6582 0 1 738 3332 272 26 48 chr6 20151257 20151520 -129365517 + MurERV4-int LTR ERVK 4862 5099 -161 1 738 2039 221 37 12 chr6 20151520 20151617 -129365420 - RLTR19C LTR ERVK -4 502 406 1 738 504 0 0 0 chr6 20151617 20151673 -129365364 + (TAA)n Simple_repeat Simple_repeat 3 58 0 1 738 2039 221 37 12 chr6 20151673 20152065 -129364972 - RLTR19C LTR ERVK -101 405 3 1 738 3332 182 19 34 chr6 20152065 20152243 -129364794 + MurERV4-int LTR ERVK 5100 5152 -108 1 738 360 280 55 23 chr6 20152397 20152525 -129364512 - ORR1E LTR MaLR -224 135 4 1 738 370 292 104 44 chr6 20152691 20153283 -129363754 - L1MC LINE L1 -701 5632 5009 1 738 22 0 0 0 chr6 20153388 20153410 -129363627 + AT_rich Low_complexity Low_complexity 1 22 0 1 738 209 191 43 0 chr6 20153677 20153724 -129363313 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 738 25 65 0 0 chr6 20153748 20153794 -129363243 + AT_rich Low_complexity Low_complexity 1 46 0 1 738 27 0 0 0 chr6 20154152 20154179 -129362858 + AT_rich Low_complexity Low_complexity 1 27 0 1 738 21 0 0 0 chr6 20154236 20154257 -129362780 + AT_rich Low_complexity Low_complexity 1 21 0 1 738 989 119 0 0 chr6 20154257 20154400 -129362637 - B1_Mus1 SINE Alu 0 148 6 1 738 241 167 82 16 chr6 20154417 20154592 -129362445 + (TA)n Simple_repeat Simple_repeat 1 186 0 1 738 7830 56 12 2 chr6 20154690 20155789 -129361248 - L1Md_F2 LINE L1 -2 6580 5471 1 738 405 42 42 14 chr6 20155987 20156059 -129360978 + (TTTTG)n Simple_repeat Simple_repeat 2 75 0 1 738 207 238 16 16 chr6 20156348 20156412 -129360625 + CT-rich Low_complexity Low_complexity 1 64 0 1 738 195 139 0 0 chr6 20156566 20156602 -129360435 + (T)n Simple_repeat Simple_repeat 1 36 0 1 738 1748 72 0 13 chr6 20157257 20157495 -129359542 - ORR1A1 LTR MaLR 0 346 112 1 738 1910 138 94 6 chr6 20159946 20160296 -129356741 - Lx LINE L1 0 6654 6274 1 738 4178 197 42 14 chr6 20160463 20161293 -129355744 - RMER13A LTR ERVK -7 853 1 1 738 480 312 53 31 chr6 20161912 20162137 -129354900 + Lx8 LINE L1 7112 7341 -132 1 738 1096 261 63 68 chr6 20162382 20162764 -129354273 + ORR1C2 LTR MaLR 1 380 -4 1 738 33 25 0 0 chr6 20163455 20163495 -129353542 + AT_rich Low_complexity Low_complexity 1 40 0 1 738 406 275 29 22 chr6 20165435 20165602 -129351435 + Lx8 LINE L1 5285 5476 -680 1 738 657 213 22 7 chr6 20165602 20165739 -129351298 + B1_Mus1 SINE Alu 9 147 -1 1 738 212 184 0 0 chr6 20165761 20165799 -129351238 + A-rich Low_complexity Low_complexity 1 38 0 1 738 2098 209 28 52 chr6 20165905 20166405 -129350632 + RMER6D LTR ERVK 1 488 -232 1 738 2875 116 4 65 chr6 20166428 20166924 -129350113 - L1_Mus4 LINE L1 -7 6629 6164 1 738 1541 111 0 4 chr6 20166924 20167151 -129349886 + L1_Mus4 LINE L1 5919 6144 -492 1 738 986 238 65 9 chr6 20167155 20167384 -129349653 + RMER6D LTR ERVK 479 720 0 1 738 707 275 56 21 chr6 20167407 20167728 -129349309 + Lx8 LINE L1 5539 5904 -1792 1 738 183 129 0 0 chr6 20167854 20167885 -129349152 + (GGA)n Simple_repeat Simple_repeat 2 32 0 1 738 864 328 47 31 chr6 20167979 20168429 -129348608 + Lx8 LINE L1 6097 6553 -920 1 738 522 0 0 0 chr6 20168933 20168991 -129348046 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 738 298 297 158 26 chr6 20169536 20169764 -129347273 + Lx8 LINE L1 7205 7462 -11 1 738 500 279 44 0 chr6 20169848 20169984 -129347053 - B1_Mur2 SINE Alu -7 142 1 1 738 6021 122 26 2 chr6 20170034 20170983 -129346054 + Lx3_Mus LINE L1 5923 6894 -115 2 738 22 0 0 0 chr6 20171377 20171399 -129345638 + AT_rich Low_complexity Low_complexity 1 22 0 2 738 483 33 0 0 chr6 20171587 20171648 -129345389 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 738 289 313 39 68 chr6 20171767 20171779 -129345258 - RSINE1 SINE B4 -64 101 2 2 738 442 231 33 0 chr6 20171779 20171870 -129345167 - B3A SINE B2 -104 94 1 2 738 641 327 19 14 chr6 20171881 20172092 -129344945 - B4 SINE B4 -75 217 6 2 738 293 82 0 20 chr6 20172154 20172204 -129344833 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 738 456 287 36 29 chr6 20172382 20172522 -129344515 + MamRep137 DNA TcMar? 301 441 -3 2 738 264 59 0 0 chr6 20173348 20173382 -129343655 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 738 25 83 0 0 chr6 20173607 20173667 -129343370 + AT_rich Low_complexity Low_complexity 1 60 0 2 738 22 103 0 0 chr6 20173701 20173779 -129343258 + AT_rich Low_complexity Low_complexity 1 78 0 2 738 1070 335 67 17 chr6 20173925 20174401 -129342636 - MLT2B4 LTR ERVL -49 507 8 2 738 25 31 0 0 chr6 20174624 20174656 -129342381 + AT_rich Low_complexity Low_complexity 1 32 0 2 738 23 33 0 0 chr6 20174734 20174764 -129342273 + AT_rich Low_complexity Low_complexity 1 30 0 2 738 24 0 0 0 chr6 20175109 20175133 -129341904 + AT_rich Low_complexity Low_complexity 1 24 0 2 738 305 233 17 0 chr6 20175596 20175656 -129341381 + L1_Mur3 LINE L1 521 581 -7131 2 738 711 300 89 58 chr6 20175645 20176223 -129340814 + L1_Mur3 LINE L1 139 654 -7058 2 738 4650 218 63 17 chr6 20176237 20177372 -129339665 - Lx2B LINE L1 -18 6982 5796 2 738 3002 132 9 34 chr6 20177375 20177893 -129339144 + RLTR1C LTR ERV1 1 507 0 2 738 1316 203 4 0 chr6 20177893 20178139 -129338898 - L1_Mur2 LINE L1 -87 5790 5544 2 738 2641 228 55 8 chr6 20178142 20179212 -129337825 - Lx5 LINE L1 -739 6311 5188 2 738 528 256 75 25 chr6 20179212 20179302 -129337735 - RLTR20C LTR ERVK 0 578 492 2 738 477 47 0 0 chr6 20179302 20179366 -129337671 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 738 1025 169 114 61 chr6 20179366 20179718 -129337319 - RLTR20C LTR ERVK -87 491 1 2 738 12755 194 35 119 chr6 20179720 20181461 -129335576 - Lx5 LINE L1 -686 5191 3465 2 738 254 50 25 0 chr6 20181461 20181501 -129335536 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 738 12755 194 35 119 chr6 20181501 20181727 -129335310 - Lx5 LINE L1 -2413 3464 3322 2 738 5954 110 66 17 chr6 20181727 20182686 -129334351 - Lx3_Mus LINE L1 -1 7008 6003 2 738 12755 194 35 119 chr6 20182686 20182856 -129334181 - L1_Mur2 LINE L1 -2556 3321 3321 2 738 1053 121 0 0 chr6 20182856 20183021 -129334016 + (GAAA)n Simple_repeat Simple_repeat 2 166 0 2 738 12755 194 35 119 chr6 20183021 20184383 -129332654 - Lx5 LINE L1 -2556 3321 2040 2 738 264 30 0 0 chr6 20184383 20184416 -129332621 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 738 12755 194 35 119 chr6 20184416 20184959 -129332078 - Lx5 LINE L1 -3838 2039 1488 2 92 5388 196 28 7 chr6 20185015 20186075 -129330962 - Lx3C LINE L1 -21 6955 5873 2 739 22142 166 46 14 chr6 20186060 20187425 -129329612 - Lx2B LINE L1 -107 5779 4386 2 739 6210 57 25 5 chr6 20187425 20188217 -129328820 - RLTR13C2 LTR ERVK 0 808 1 2 739 22142 166 46 14 chr6 20188217 20191272 -129325765 - Lx2B LINE L1 -1501 4385 1214 2 739 275 175 0 0 chr6 20191272 20191329 -129325708 - L1VL1 LINE L1 -5368 1054 998 2 739 2754 209 25 81 chr6 20191297 20192148 -129324889 - Lx2B LINE L1 -5691 1293 523 2 739 309 179 0 95 chr6 20192152 20192226 -129324811 - L1_Mur2 LINE L1 -4385 1492 1426 2 739 357 187 0 0 chr6 20192228 20192303 -129324734 + C-rich Low_complexity Low_complexity 5 79 0 2 739 710 171 191 9 chr6 20192312 20192631 -129324406 - L1_Mur2 LINE L1 -4464 1413 1031 2 739 619 252 126 58 chr6 20193893 20194218 -129322819 - L1_Mur2 LINE L1 -6051 1035 689 2 739 938 296 51 12 chr6 20194356 20194691 -129322346 + MTE2b LTR MaLR 27 374 -5 2 739 369 311 47 52 chr6 20194934 20195127 -129321910 - L1MC LINE L1 -2750 3396 3205 2 739 226 318 43 43 chr6 20195286 20195378 -129321659 + B4A SINE B4 183 274 -18 2 739 450 0 0 0 chr6 20195414 20195464 -129321573 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 739 423 0 0 0 chr6 20195464 20195510 -129321527 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 739 264 228 51 0 chr6 20195511 20195590 -129321447 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 2 739 405 102 0 0 chr6 20195597 20195656 -129321381 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 739 405 0 0 0 chr6 20195656 20195700 -129321337 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 739 555 298 97 20 chr6 20195710 20196100 -129320937 - L1MC LINE L1 -2961 3185 2766 2 739 314 354 15 44 chr6 20196114 20196250 -129320787 + B3A SINE B2 1 132 -66 2 739 1650 182 97 0 chr6 20196727 20197035 -129320002 + Lx3A LINE L1 6644 6981 0 2 739 1438 214 62 30 chr6 20197275 20197664 -129319373 + RMER16 LTR ERVK 1 533 0 2 739 1468 41 0 25 chr6 20197910 20198108 -129318929 - L1Md_F3 LINE L1 -14 6570 6378 2 739 201 94 0 0 chr6 20198543 20198575 -129318462 + (T)n Simple_repeat Simple_repeat 1 32 0 2 739 1045 62 0 0 chr6 20198575 20198703 -129318334 - B1_Mm SINE Alu -19 128 1 2 739 24 0 0 0 chr6 20198714 20198738 -129318299 + AT_rich Low_complexity Low_complexity 1 24 0 2 739 350 346 110 15 chr6 20198927 20199191 -129317846 - L1M2 LINE L1 -2559 3584 3296 2 739 21 0 0 0 chr6 20199822 20199843 -129317194 + AT_rich Low_complexity Low_complexity 1 21 0 2 739 396 0 0 0 chr6 20200171 20200215 -129316822 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 739 824 318 57 28 chr6 20200447 20200506 -129316531 - Lx6 LINE L1 -10 7450 7399 2 739 2567 198 70 39 chr6 20200506 20201174 -129315863 + RMER6C LTR ERVK 1 689 -1 2 739 824 318 57 28 chr6 20201174 20201467 -129315570 - Lx6 LINE L1 -62 7398 7088 2 739 3180 269 11 11 chr6 20201466 20202288 -129314749 - Lx6 LINE L1 -513 6947 6126 2 739 6240 212 30 51 chr6 20202284 20204017 -129313020 - L1_Mur3 LINE L1 -2090 3790 2072 2 739 195 42 0 0 chr6 20204017 20204041 -129312996 + (TGG)n Simple_repeat Simple_repeat 3 26 0 2 739 6240 212 30 51 chr6 20204041 20204078 -129312959 - L1_Mur3 LINE L1 -3809 2071 2058 2 739 405 0 0 0 chr6 20204078 20204123 -129312914 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 739 6240 212 30 51 chr6 20204123 20204198 -129312839 - L1_Mur3 LINE L1 -3823 2057 1982 2 739 327 85 0 0 chr6 20204204 20204251 -129312786 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2 739 2471 192 83 57 chr6 20204780 20205452 -129311585 + RMER6C LTR ERVK 1 690 0 2 739 714 309 14 10 chr6 20206515 20206724 -129310313 - B3 SINE B2 -6 210 1 2 739 187 231 22 11 chr6 20207280 20207372 -129309665 + GA-rich Low_complexity Low_complexity 2 94 0 2 739 263 328 0 47 chr6 20207518 20207646 -129309391 + CT-rich Low_complexity Low_complexity 3 124 0 2 739 976 336 70 41 chr6 20207703 20208210 -129308827 - Lx8 LINE L1 -410 7063 6527 2 739 1338 235 86 3 chr6 20208210 20208547 -129308490 - ORR1B2 LTR MaLR 0 367 3 2 739 976 336 70 41 chr6 20208547 20208700 -129308337 - Lx8 LINE L1 -947 6526 6384 2 739 906 10 0 0 chr6 20208740 20208843 -129308194 + (TTC)n Simple_repeat Simple_repeat 2 104 0 2 739 15076 128 54 23 chr6 20208845 20212613 -129304424 - L1_Mus1 LINE L1 -6 6576 2356 2 739 42 0 0 0 chr6 20212715 20212757 -129304280 + AT_rich Low_complexity Low_complexity 1 42 0 2 739 206 234 16 0 chr6 20212786 20212850 -129304187 + (TTG)n Simple_repeat Simple_repeat 2 66 0 2 739 301 327 134 11 chr6 20212855 20212922 -129304115 - Lx9 LINE L1 -76 7568 7503 2 739 423 0 0 0 chr6 20212922 20212969 -129304068 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 739 301 327 134 11 chr6 20212969 20213185 -129303852 - Lx9 LINE L1 -142 7502 7252 2 739 611 279 125 32 chr6 20213167 20213448 -129303589 + Lx7 LINE L1 5628 5956 -1740 2 739 690 247 19 82 chr6 20216196 20216403 -129300634 + ORR1C2 LTR MaLR 1 194 -190 2 739 342 0 0 0 chr6 20216482 20216520 -129300517 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 739 745 115 13 13 chr6 20216520 20216679 -129300358 + (CAGAGA)n Simple_repeat Simple_repeat 2 160 0 2 739 7921 137 9 15 chr6 20216796 20218528 -129298509 + Lx3A LINE L1 5257 6971 -10 2 739 207 0 0 0 chr6 20218536 20218559 -129298478 + (TAAG)n Simple_repeat Simple_repeat 1 23 0 2 739 255 226 58 7 chr6 20218631 20218769 -129298268 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 2 739 2738 103 8 8 chr6 20218848 20219248 -129297789 - MTB LTR MaLR 0 400 1 2 739 284 222 71 36 chr6 20219375 20219487 -129297550 - L1MA10 LINE L1 -3 6331 6216 2 739 1046 95 0 0 chr6 20219698 20219835 -129297202 + B1_Mus2 SINE Alu 2 138 -9 2 739 180 0 0 0 chr6 20219835 20219855 -129297182 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 739 555 16 0 0 chr6 20219857 20219921 -129297116 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 739 1877 314 94 83 chr6 20219924 20221344 -129295693 - RMER1C Other Other -10 1332 76 2 739 284 289 65 20 chr6 20222277 20222520 -129294517 - L1MB7 LINE L1 -175 6009 5757 2 739 450 79 0 0 chr6 20222558 20222621 -129294416 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 739 243 271 28 14 chr6 20222741 20222812 -129294225 + CT-rich Low_complexity Low_complexity 16 87 0 2 739 573 94 0 0 chr6 20222939 20223024 -129294013 + (TA)n Simple_repeat Simple_repeat 2 86 0 2 739 2455 248 66 22 chr6 20223050 20223698 -129293339 - Lx7 LINE L1 -339 7357 6681 2 739 247 306 82 59 chr6 20224886 20225056 -129291981 - LTR40b LTR ERVL -23 439 266 2 739 3262 43 5 0 chr6 20225637 20226031 -129291006 + MTA_Mm LTR MaLR 1 396 0 2 739 204 208 0 0 chr6 20226150 20226198 -129290839 + (TTG)n Simple_repeat Simple_repeat 3 50 0 2 739 360 0 0 0 chr6 20226532 20226572 -129290465 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 739 744 45 36 0 chr6 20226696 20226808 -129290229 - L1Md_F3 LINE L1 -1 6583 6468 2 739 1817 194 0 6 chr6 20226838 20227196 -129289841 - L1_Mur2 LINE L1 -1999 3878 3523 2 739 6060 202 25 18 chr6 20227192 20227776 -129289261 + L1_Mur2 LINE L1 4324 4912 -965 2 739 243 0 0 0 chr6 20227776 20227803 -129289234 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 2 739 6060 202 25 18 chr6 20227803 20228602 -129288435 + L1_Mur2 LINE L1 4913 5717 -160 2 739 13731 57 3 2 chr6 20228657 20230424 -129286613 + L1_Mm LINE L1 3818 5586 -297 2 739 7818 56 6 1 chr6 20230424 20231414 -129285623 + L1Md_F2 LINE L1 5588 6582 0 2 739 826 206 29 118 chr6 20231420 20231734 -129285303 + RMER6C LTR ERVK 467 708 -12 2 739 861 60 0 0 chr6 20231764 20231880 -129285157 + (GA)n Simple_repeat Simple_repeat 2 117 0 2 739 246 150 33 16 chr6 20232158 20232219 -129284818 + (TA)n Simple_repeat Simple_repeat 1 62 0 2 739 496 102 34 0 chr6 20232415 20232503 -129284534 + (TATG)n Simple_repeat Simple_repeat 4 94 0 3 739 40 49 0 0 chr6 20232627 20232688 -129284349 + AT_rich Low_complexity Low_complexity 1 61 0 3 739 26 64 0 0 chr6 20233552 20233599 -129283438 + AT_rich Low_complexity Low_complexity 1 47 0 3 739 208 221 26 13 chr6 20234210 20234288 -129282749 + (TA)n Simple_repeat Simple_repeat 1 79 0 3 739 417 177 18 9 chr6 20234386 20234500 -129282537 + (TA)n Simple_repeat Simple_repeat 1 115 0 3 739 8352 30 1 0 chr6 20235241 20236728 -129280309 - L1Md_T LINE L1 0 6582 5095 3 739 36 23 0 0 chr6 20237298 20237341 -129279696 + AT_rich Low_complexity Low_complexity 1 43 0 3 739 30 0 0 0 chr6 20238068 20238098 -129278939 + AT_rich Low_complexity Low_complexity 1 30 0 3 739 268 253 0 0 chr6 20238102 20238193 -129278844 - Lx9 LINE L1 -4 7640 7550 3 739 4244 209 75 24 chr6 20238260 20239226 -129277811 + Lx5 LINE L1 5629 6643 -407 3 739 35 0 0 0 chr6 20239810 20239845 -129277192 + AT_rich Low_complexity Low_complexity 1 35 0 3 739 30 59 0 0 chr6 20240122 20240173 -129276864 + AT_rich Low_complexity Low_complexity 1 51 0 3 739 5058 113 35 11 chr6 20241492 20242296 -129274741 - L1_Mus3 LINE L1 0 6638 5816 3 739 1957 212 146 51 chr6 20243996 20244626 -129272411 + RMER6C LTR ERVK 1 690 0 3 739 716 206 419 3 chr6 20244674 20244989 -129272048 - Lx4B LINE L1 -5 7053 6608 3 739 225 250 43 29 chr6 20244985 20245055 -129271982 - Lx4B LINE L1 -643 6415 6345 3 739 1802 174 115 15 chr6 20245048 20245457 -129271580 + Lx4B LINE L1 4740 5189 -688 3 739 35900 39 3 7 chr6 20245463 20250838 -129266199 + L1Md_T LINE L1 237 5584 -299 3 739 8118 48 0 0 chr6 20250840 20251836 -129265201 + L1Md_T LINE L1 5587 6582 0 3 739 3582 212 8 44 chr6 20251852 20253055 -129263982 + Lx4B LINE L1 5182 6320 -738 3 739 23 54 0 0 chr6 20253650 20253687 -129263350 + AT_rich Low_complexity Low_complexity 1 37 0 3 739 2404 37 7 0 chr6 20253716 20254011 -129263026 - L1Md_F3 LINE L1 -2 6582 6286 3 739 3862 174 30 7 chr6 20254025 20254765 -129262272 + Lx2 LINE L1 6241 6997 0 3 739 4468 67 14 0 chr6 20254773 20255013 -129262024 + L1Md_F2 LINE L1 4995 5242 -641 3 739 189 0 0 0 chr6 20255013 20255034 -129262003 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 739 4468 67 14 0 chr6 20255034 20255376 -129261661 + L1Md_F2 LINE L1 5243 5584 -299 3 739 8053 45 1 8 chr6 20255377 20256167 -129260870 + L1Md_F2 LINE L1 5587 6377 -205 3 739 3296 53 0 128 chr6 20256167 20256667 -129260370 - RLTR10C LTR ERVK 0 436 1 3 739 8053 45 1 8 chr6 20256667 20256879 -129260158 + L1Md_F2 LINE L1 6378 6582 0 3 739 510 17 0 0 chr6 20257049 20257108 -129259929 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 3 739 480 273 79 24 chr6 20258668 20258833 -129258204 + MTEa LTR MaLR 198 371 -8 3 739 192 125 0 0 chr6 20258991 20259023 -129258014 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 739 567 267 38 16 chr6 20259204 20259387 -129257650 + Lx6 LINE L1 6659 6845 -615 3 739 457 316 38 6 chr6 20259378 20259537 -129257500 + Lx5 LINE L1 6551 6714 -336 3 739 1466 216 23 60 chr6 20259593 20259761 -129257276 + ORR1B1 LTR MaLR 41 202 -192 3 739 1689 170 30 62 chr6 20259761 20260099 -129256938 - ORR1A2 LTR MaLR 0 327 1 3 739 1466 216 23 60 chr6 20260099 20260279 -129256758 + ORR1B1 LTR MaLR 203 376 -18 3 739 498 297 113 31 chr6 20260287 20260579 -129256458 + Lx6 LINE L1 7145 7460 0 3 739 249 209 28 56 chr6 20260919 20260990 -129256047 + Lx7 LINE L1 6110 6178 -1518 3 739 254 213 46 23 chr6 20261344 20261451 -129255586 - ORR1D2 LTR MaLR -14 407 290 3 739 277 143 42 42 chr6 20261691 20261786 -129255251 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 3 739 358 73 18 35 chr6 20261789 20261805 -129255232 - HAL1-3A_ME LINE L1 -829 2029 2013 3 739 573 55 0 0 chr6 20261805 20261878 -129255159 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 739 358 73 18 35 chr6 20261878 20261918 -129255119 - HAL1-3A_ME LINE L1 -846 2012 1974 3 739 21 0 0 0 chr6 20262329 20262350 -129254687 + AT_rich Low_complexity Low_complexity 1 21 0 3 739 225 0 0 0 chr6 20262469 20262494 -129254543 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 739 445 335 17 34 chr6 20263158 20263337 -129253700 - B3A SINE B2 0 198 23 3 739 555 353 63 18 chr6 20264828 20265160 -129251877 + RMER5 LTR ERV1 67 413 -121 3 739 3460 164 28 5 chr6 20265175 20265751 -129251286 + RLTR17 LTR ERVK 1 589 -103 3 739 21 0 0 0 chr6 20265756 20265777 -129251260 + AT_rich Low_complexity Low_complexity 1 21 0 3 739 219 36 0 0 chr6 20266220 20266248 -129250789 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 739 9981 224 45 21 chr6 20266691 20270160 -129246877 - Lx5 LINE L1 -204 6846 3276 3 739 2858 233 44 14 chr6 20270165 20270209 -129246828 - Lx5 LINE L1 -3778 2099 2058 3 739 444 19 0 0 chr6 20270209 20270262 -129246775 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 739 2858 231 36 21 chr6 20270262 20271242 -129245795 - Lx5 LINE L1 -3820 2057 1042 3 739 1685 143 88 111 chr6 20271246 20271732 -129245305 + IAPLTR2_Mm LTR ERVK 1 475 0 3 739 3328 108 40 46 chr6 20271734 20272599 -129244438 + IAPEz-int LTR ERVK 3 662 -5819 3 739 2563 82 0 17 chr6 20272599 20272947 -129244090 + IAPEz-int LTR ERVK 1359 1700 -4781 3 739 6171 67 23 4 chr6 20272942 20273755 -129243282 + IAPEz-int LTR ERVK 5653 6481 0 3 739 1825 156 99 25 chr6 20273755 20274197 -129242840 + IAPLTR2_Mm LTR ERVK 1 475 0 3 739 375 23 0 0 chr6 20274467 20274511 -129242526 + (TTTTG)n Simple_repeat Simple_repeat 5 48 0 3 739 1785 224 26 24 chr6 20275344 20275765 -129241272 + MTB_Mm LTR MaLR 1 413 -8 3 739 1595 247 40 50 chr6 20276613 20277112 -129239925 + Lx7 LINE L1 6013 6506 -1190 3 739 430 188 12 0 chr6 20277123 20277203 -129239834 - L1_Mur1 LINE L1 -724 5162 5082 3 739 11363 110 36 6 chr6 20277198 20279257 -129237780 + Lx LINE L1 3103 5453 -433 3 739 7328 85 5 2 chr6 20279257 20280246 -129236791 + L1Md_F2 LINE L1 5588 6579 -3 3 739 9261 133 64 3 chr6 20280246 20280833 -129236204 + Lx LINE L1 5454 6058 -596 3 739 742 259 81 17 chr6 20280824 20281060 -129235977 + Lx7 LINE L1 7076 7326 -370 3 739 1303 242 200 9 chr6 20281067 20281492 -129235545 - Lx6 LINE L1 -192 7268 6763 3 739 2632 80 0 67 chr6 20281985 20282388 -129234649 - L1_Mus2 LINE L1 0 6566 6191 3 739 1441 66 56 0 chr6 20282388 20282585 -129234452 + L1_Mus2 LINE L1 5946 6153 -413 3 739 766 355 45 47 chr6 20282585 20283096 -129233941 - MTE-int LTR MaLR -1013 567 58 3 739 233 109 22 0 chr6 20283117 20283163 -129233874 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 3 739 513 285 174 47 chr6 20283572 20284171 -129232866 + L1M4 LINE L1 4119 4793 -1353 3 739 1838 79 4 4 chr6 20284304 20284557 -129232480 + L1_Mus2 LINE L1 6314 6566 0 3 739 354 337 44 49 chr6 20285153 20285356 -129231681 - LTR68 LTR ERV1 -305 435 234 3 739 5983 86 1 0 chr6 20285580 20286383 -129230654 + L1Md_F2 LINE L1 4782 5585 -298 3 739 7694 66 3 4 chr6 20286384 20287378 -129229659 + L1Md_F2 LINE L1 5587 6579 -3 3 739 1865 268 103 33 chr6 20288015 20288587 -129228450 + Lx6 LINE L1 6760 7371 -89 3 739 1005 85 0 0 chr6 20288647 20288788 -129228249 + (CA)n Simple_repeat Simple_repeat 2 142 0 3 739 555 238 29 24 chr6 20288789 20288996 -129228041 - Lx9 LINE L1 -42 7602 7395 3 739 1079 55 14 14 chr6 20289053 20289200 -129227837 + B1_Mus1 SINE Alu 2 148 0 3 739 192 97 0 0 chr6 20289203 20289234 -129227803 + (A)n Simple_repeat Simple_repeat 1 31 0 3 739 1065 111 0 0 chr6 20289508 20289652 -129227385 + B1_Mus1 SINE Alu 5 148 0 3 739 207 0 0 0 chr6 20289662 20289685 -129227352 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 739 357 93 0 0 chr6 20289830 20289884 -129227153 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 739 28 0 0 0 chr6 20290706 20290734 -129226303 + AT_rich Low_complexity Low_complexity 1 28 0 3 739 201 94 0 0 chr6 20290947 20290979 -129226058 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 3 739 266 340 48 28 chr6 20291365 20291510 -129225527 + B1F2 SINE Alu 2 149 0 3 739 230 318 28 0 chr6 20291754 20291861 -129225176 - Lx7 LINE L1 -50 7646 7537 3 739 241 261 0 0 chr6 20292041 20292106 -129224931 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 739 255 288 86 19 chr6 20292800 20293009 -129224028 + L1M2 LINE L1 3697 3919 -2224 3 739 489 17 0 0 chr6 20293103 20293161 -129223876 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 739 1132 68 0 0 chr6 20293202 20293348 -129223689 + B1_Mus2 SINE Alu 2 147 0 3 739 206 121 0 0 chr6 20293420 20293453 -129223584 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 3 739 476 277 22 10 chr6 20293932 20294089 -129222948 + Lx4B LINE L1 6127 6283 -775 3 739 2590 228 19 41 chr6 20294084 20294724 -129222313 + Lx4B LINE L1 6429 7054 -4 3 739 6756 138 14 0 chr6 20295041 20296093 -129220944 - Lx LINE L1 -1 6653 5587 3 739 21 57 0 0 chr6 20297129 20297164 -129219873 + AT_rich Low_complexity Low_complexity 1 35 0 3 739 368 275 38 12 chr6 20297374 20297555 -129219482 + L1MA6 LINE L1 5992 6186 -114 3 739 204 40 0 0 chr6 20297568 20297593 -129219444 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 739 1144 75 0 0 chr6 20297663 20297809 -129219228 + B1_Mus1 SINE Alu 1 146 -2 3 739 1116 82 0 0 chr6 20298059 20298205 -129218832 + B1_Mm SINE Alu 2 147 0 3 739 546 328 21 26 chr6 20299490 20299684 -129217353 + MTD LTR MaLR 8 200 -219 3 739 343 232 0 0 chr6 20299755 20299824 -129217213 - ERVL-E-int LTR ERVL -1215 4452 4384 3 739 351 276 86 0 chr6 20299835 20299940 -129217097 + MTD LTR MaLR 281 394 -25 3 739 186 305 58 78 chr6 20300091 20300194 -129216843 - MIRb SINE MIR -105 163 63 3 739 213 39 0 0 chr6 20300301 20300327 -129216710 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 3 739 4394 164 69 2 chr6 20300566 20301362 -129215675 + Lx3B LINE L1 6109 6957 -16 3 739 459 0 0 0 chr6 20301656 20301707 -129215330 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 739 429 20 0 0 chr6 20301707 20301756 -129215281 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 739 253 231 62 0 chr6 20301845 20301910 -129215127 - L1M LINE L1 -816 5424 5356 3 739 21 36 0 0 chr6 20302179 20302207 -129214830 + AT_rich Low_complexity Low_complexity 1 28 0 3 739 435 335 33 0 chr6 20302207 20302359 -129214678 - RSINE1 SINE B4 -6 159 3 3 739 23 0 0 0 chr6 20303527 20303550 -129213487 + AT_rich Low_complexity Low_complexity 1 23 0 3 739 31 58 0 0 chr6 20304530 20304582 -129212455 + AT_rich Low_complexity Low_complexity 1 52 0 3 739 1910 255 30 17 chr6 20304936 20305403 -129211634 - Lx6 LINE L1 -179 7281 6809 3 739 24 67 0 0 chr6 20305731 20305776 -129211261 + AT_rich Low_complexity Low_complexity 1 45 0 3 739 21 0 0 0 chr6 20305998 20306019 -129211018 + AT_rich Low_complexity Low_complexity 1 21 0 3 739 597 28 0 0 chr6 20306546 20306617 -129210420 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 3 739 438 381 44 10 chr6 20307294 20307498 -129209539 + B3 SINE B2 5 215 -1 4 739 359 311 43 14 chr6 20308796 20308996 -129208041 - L1MC1 LINE L1 -9 6324 6118 4 739 446 0 0 18 chr6 20308996 20309051 -129207986 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 4 739 1738 161 43 9 chr6 20309055 20309381 -129207656 - L1_Mus3 LINE L1 -23 6615 6279 4 739 822 197 215 108 chr6 20309526 20309851 -129207186 + ORR1C1 LTR MaLR 19 378 0 4 739 282 343 92 14 chr6 20309903 20310045 -129206992 - B3A SINE B2 -3 195 43 4 739 234 200 0 22 chr6 20310057 20310103 -129206934 - ORR1E LTR MaLR -45 334 290 4 739 281 226 0 12 chr6 20310432 20310517 -129206520 + CT-rich Low_complexity Low_complexity 3 86 0 4 739 259 173 0 19 chr6 20310837 20310890 -129206147 + L1M5 LINE L1 5555 5606 -556 4 739 260 339 77 77 chr6 20311188 20311383 -129205654 - ORR1E LTR MaLR -155 204 10 4 739 771 309 49 57 chr6 20311593 20311963 -129205074 + ORR1D1 LTR MaLR 1 367 -7 4 739 223 140 20 20 chr6 20312647 20312698 -129204339 + A-rich Low_complexity Low_complexity 1 51 0 4 739 273 177 49 25 chr6 20313053 20313215 -129203822 + (TCTA)n Simple_repeat Simple_repeat 3 168 0 4 739 577 362 99 41 chr6 20314465 20315027 -129202010 + RLTR26 LTR ERVK 21 636 -6 4 739 1782 218 58 21 chr6 20315053 20315600 -129201437 - RMER6D LTR ERVK -1 719 225 4 739 1107 94 0 0 chr6 20315600 20315780 -129201257 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 739 1647 227 48 33 chr6 20315780 20316116 -129200921 - RMER6D LTR ERVK -377 343 5 4 740 1374 230 52 9 chr6 20316366 20316691 -129200346 + Lx9 LINE L1 7074 7412 -232 4 740 298 272 52 117 chr6 20316851 20317005 -129200032 + B3A SINE B2 38 181 -17 4 740 342 0 0 0 chr6 20317034 20317072 -129199965 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 740 1843 165 40 25 chr6 20317641 20318039 -129198998 - L1_Mur2 LINE L1 -409 5468 5065 4 740 3112 153 42 21 chr6 20318085 20318705 -129198332 + L1_Mur2 LINE L1 4252 4884 -993 4 740 1545 51 0 0 chr6 20318816 20319012 -129198025 - L1Md_F2 LINE L1 -14 6568 6373 4 740 2271 156 15 21 chr6 20319013 20319493 -129197544 - L1_Mm LINE L1 -694 5606 4859 4 740 2254 55 7 0 chr6 20319686 20319977 -129197060 - L1Md_F2 LINE L1 -12 6570 6278 4 740 30 45 0 0 chr6 20320221 20320265 -129196772 + AT_rich Low_complexity Low_complexity 1 44 0 4 740 537 372 21 57 chr6 20320312 20320594 -129196443 - B4A SINE B4 -19 273 2 4 740 234 0 0 0 chr6 20321675 20321701 -129195336 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 740 28 29 0 0 chr6 20322290 20322325 -129194712 + AT_rich Low_complexity Low_complexity 1 35 0 4 740 975 199 82 59 chr6 20322457 20322762 -129194275 - Lx7 LINE L1 -3 7693 7382 4 740 1333 45 11 0 chr6 20322797 20322974 -129194063 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 4 740 1956 111 0 0 chr6 20323066 20323346 -129193691 + Lx2 LINE L1 5590 5869 -1128 4 740 808 90 120 0 chr6 20323338 20323471 -129193566 - Lx LINE L1 -658 5996 5848 4 740 550 281 43 74 chr6 20323451 20323801 -129193236 - Lx7 LINE L1 -1532 6164 5826 4 740 8029 35 0 0 chr6 20323809 20325354 -129191683 - L1Md_T LINE L1 0 6582 5038 4 740 1142 82 0 0 chr6 20325468 20325615 -129191422 - B1_Mm SINE Alu 0 147 1 4 740 2464 228 117 92 chr6 20325640 20326048 -129190989 - Lx7 LINE L1 -170 5710 5254 4 740 1818 175 3 38 chr6 20326048 20326387 -129190650 - ORR1A2 LTR MaLR 0 327 1 4 740 447 35 0 0 chr6 20326390 20326447 -129190590 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 740 2464 228 117 92 chr6 20326447 20326534 -129190503 - Lx7 LINE L1 -627 5253 5227 4 740 297 51 0 0 chr6 20326534 20326573 -129190464 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 740 2464 228 117 92 chr6 20326573 20327072 -129189965 - Lx7 LINE L1 -654 5226 4686 4 740 418 256 151 8 chr6 20327078 20327165 -129189872 - RMER13A LTR ERVK -1 859 754 4 740 234 0 0 0 chr6 20327165 20327191 -129189846 + (GGCTG)n Simple_repeat Simple_repeat 1 26 0 4 740 418 256 151 8 chr6 20327191 20327229 -129189808 - RMER13A LTR ERVK -107 753 716 4 740 1049 65 14 30 chr6 20327229 20327595 -129189442 + (TA)n Simple_repeat Simple_repeat 1 360 0 4 740 4998 103 26 6 chr6 20327618 20328349 -129188688 - Lx3_Mus LINE L1 0 7009 6264 4 740 617 248 18 97 chr6 20328349 20328577 -129188460 - Lx7 LINE L1 -2350 3530 3321 4 740 8332 149 27 2 chr6 20328573 20329950 -129187087 - Lx2 LINE L1 0 6997 5587 4 740 3188 192 73 27 chr6 20329960 20330817 -129186220 - Lx7 LINE L1 -2532 3348 2452 4 740 289 227 0 0 chr6 20331332 20331398 -129185639 - L1_Mur3 LINE L1 -3231 2649 2584 4 740 675 218 38 52 chr6 20331967 20332180 -129184857 - Lx7 LINE L1 0 7696 7487 4 740 22 70 0 0 chr6 20332234 20332277 -129184760 + AT_rich Low_complexity Low_complexity 1 43 0 4 740 414 0 0 0 chr6 20333942 20333988 -129183049 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 740 473 295 3 73 chr6 20334597 20334926 -129182111 + L1M2 LINE L1 4999 5304 -839 4 740 944 259 60 4 chr6 20334960 20335212 -129181825 + Lx6 LINE L1 6483 6748 -712 4 740 6643 8 0 0 chr6 20335229 20335972 -129181065 - L1Md_T LINE L1 -225 6357 5615 4 740 1942 22 0 0 chr6 20335972 20336224 -129180813 + L1Md_T LINE L1 6354 6582 0 4 740 1743 297 30 100 chr6 20336269 20337028 -129180009 + Lx6 LINE L1 6741 7446 -14 4 740 1151 69 0 0 chr6 20337058 20337203 -129179834 + B1_Mus2 SINE Alu 2 146 -1 4 740 207 0 0 0 chr6 20337203 20337226 -129179811 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 740 480 18 0 0 chr6 20337226 20337283 -129179754 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 740 1095 96 11 17 chr6 20337328 20337509 -129179528 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 740 1099 85 0 0 chr6 20337509 20337650 -129179387 - B1_Mus1 SINE Alu -6 142 2 4 740 354 250 0 45 chr6 20338845 20338933 -129178104 + B1_Mur3 SINE Alu 66 149 0 4 740 189 211 53 0 chr6 20338976 20339014 -129178023 - L2c LINE L2 -80 3307 3268 4 740 279 0 0 0 chr6 20339093 20339124 -129177913 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 740 203 61 0 29 chr6 20339318 20339352 -129177685 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 4 740 10443 76 2 3 chr6 20340046 20342137 -129174900 - L1Md_F2 LINE L1 -6 6576 4487 4 740 233 214 215 25 chr6 20342558 20342716 -129174321 - MER33 DNA MER1_type -65 259 72 4 740 33 43 0 0 chr6 20344502 20344549 -129172488 + AT_rich Low_complexity Low_complexity 1 47 0 4 740 471 265 15 7 chr6 20344737 20344874 -129172163 + RMER1C Other Other 1088 1225 -117 4 740 208 310 0 0 chr6 20344874 20344945 -129172092 + CT-rich Low_complexity Low_complexity 3 73 0 4 740 535 232 58 7 chr6 20344945 20345084 -129171953 + RMER1C Other Other 1196 1341 -1 4 740 452 325 123 31 chr6 20345122 20345284 -129171753 + B3A SINE B2 6 182 -16 4 740 1296 70 0 0 chr6 20345390 20345562 -129171475 + (TTCCC)n Simple_repeat Simple_repeat 4 175 0 4 740 7444 181 22 9 chr6 20345562 20347515 -129169522 - Lx2 LINE L1 -2 6995 5020 4 740 255 148 48 19 chr6 20348024 20348127 -129168910 + (TCTA)n Simple_repeat Simple_repeat 3 108 0 4 740 1767 111 30 4 chr6 20348384 20348655 -129168382 - L1_Mus4 LINE L1 -1 6635 6358 4 740 402 21 0 0 chr6 20349973 20350020 -129167017 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 740 313 343 30 0 chr6 20350349 20350448 -129166589 + L4 LINE RTE 216 317 -1712 4 740 256 457 53 21 chr6 20351260 20351544 -129165493 + LTR16A LTR ERVL 151 443 -8 4 740 21 57 0 0 chr6 20351888 20351923 -129165114 + AT_rich Low_complexity Low_complexity 1 35 0 4 740 8807 110 22 11 chr6 20351927 20353527 -129163510 - Lx3A LINE L1 0 6981 5366 4 740 201 154 0 0 chr6 20353545 20353584 -129163453 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 740 207 0 0 0 chr6 20353989 20354012 -129163025 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 740 25 51 0 0 chr6 20355198 20355237 -129161800 + AT_rich Low_complexity Low_complexity 1 39 0 4 740 231 380 65 16 chr6 20355951 20356074 -129160963 - B1F1 SINE Alu -17 132 4 4 740 6109 169 34 11 chr6 20356104 20357357 -129159680 - L1_Mur2 LINE L1 -1005 4872 3591 4 740 3382 203 42 4 chr6 20357356 20358062 -129158975 + L1_Mur2 LINE L1 4852 5584 -293 4 740 1394 216 57 22 chr6 20358062 20358379 -129158658 + ORR1B1 LTR MaLR 67 394 0 4 740 2949 210 53 10 chr6 20358379 20359054 -129157983 + ORR1B1-int LTR MaLR 1 704 -1259 4 740 1110 203 4 94 chr6 20358976 20359231 -129157806 + MT2B LTR ERVL 16 247 -354 4 740 4378 206 18 128 chr6 20359245 20360643 -129156394 + ORR1B1-int LTR MaLR 686 1792 0 4 740 707 238 51 112 chr6 20360643 20360951 -129156086 + ORR1B1 LTR MaLR 1 244 -150 4 740 21 36 0 0 chr6 20360971 20360999 -129156038 + AT_rich Low_complexity Low_complexity 1 28 0 4 740 393 22 0 0 chr6 20361249 20361295 -129155742 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 740 498 17 0 0 chr6 20361866 20361925 -129155112 + (TAAAA)n Simple_repeat Simple_repeat 3 61 0 4 740 393 22 0 0 chr6 20363903 20363949 -129153088 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 740 21 36 0 0 chr6 20364836 20364864 -129152173 + AT_rich Low_complexity Low_complexity 1 28 0 4 740 267 356 35 25 chr6 20364868 20365067 -129151970 + B3 SINE B2 5 205 -11 4 740 1378 304 38 35 chr6 20365233 20365870 -129151167 - Lx9 LINE L1 -2 7642 7004 4 740 186 103 0 0 chr6 20366588 20366617 -129150420 + (CATATA)n Simple_repeat Simple_repeat 1 29 0 4 740 4692 47 1 0 chr6 20367098 20367863 -129149174 - L1Md_F2 LINE L1 -415 6167 5401 4 740 6997 66 2 0 chr6 20367861 20368821 -129148216 - L1Md_F2 LINE L1 -655 5927 4967 4 740 2999 71 5 0 chr6 20368821 20369216 -129147821 + L1Md_A LINE L1 6185 6581 -1 4 740 23 54 0 0 chr6 20369221 20369258 -129147779 + AT_rich Low_complexity Low_complexity 1 37 0 4 740 1645 175 305 43 chr6 20369436 20370136 -129146901 + RMER6C LTR ERVK 1 718 -2 4 740 432 326 0 0 chr6 20371662 20371760 -129145277 - B1F2 SINE Alu -51 98 1 4 740 2197 281 84 11 chr6 20371986 20372122 -129144915 - Lx9 LINE L1 -7 7637 7479 4 740 264 59 0 0 chr6 20372122 20372156 -129144881 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 740 2197 281 84 11 chr6 20372156 20372826 -129144211 - Lx9 LINE L1 -166 7478 6773 4 740 315 49 0 0 chr6 20372894 20372935 -129144102 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 740 186 143 0 0 chr6 20372935 20372970 -129144067 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 740 327 49 0 0 chr6 20373007 20373048 -129143989 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 740 214 300 0 0 chr6 20373049 20373099 -129143938 + polypyrimidine Low_complexity Low_complexity 3 52 0 4 740 33 66 0 0 chr6 20373552 20373613 -129143424 + AT_rich Low_complexity Low_complexity 1 61 0 5 740 3535 161 37 12 chr6 20375817 20376190 -129140847 - RLTR33 LTR ERVK -21 657 287 5 740 2912 29 9 0 chr6 20376190 20376533 -129140504 + ORR1A0 LTR MaLR 1 346 0 5 740 3535 161 37 12 chr6 20376533 20376800 -129140237 - RLTR33 LTR ERVK -392 286 1 5 740 263 387 49 29 chr6 20377160 20377612 -129139425 + Lx8 LINE L1 7008 7468 -5 5 740 21 71 0 0 chr6 20377869 20377911 -129139126 + AT_rich Low_complexity Low_complexity 1 42 0 5 740 207 0 0 0 chr6 20378149 20378172 -129138865 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 740 231 88 0 0 chr6 20378957 20378991 -129138046 + (TTTAG)n Simple_repeat Simple_repeat 2 35 0 5 740 738 352 80 9 chr6 20379237 20379587 -129137450 + MTE2b LTR MaLR 1 375 -4 5 740 2051 138 22 0 chr6 20379704 20380024 -129137013 + ORR1A2 LTR MaLR 1 327 0 5 740 21 0 0 0 chr6 20380353 20380374 -129136663 + AT_rich Low_complexity Low_complexity 1 21 0 5 740 21 0 0 0 chr6 20382061 20382082 -129134955 + AT_rich Low_complexity Low_complexity 1 21 0 5 740 2862 192 82 9 chr6 20382357 20383036 -129134001 + L1Md_F LINE L1 411 1108 -5411 5 740 402 284 51 137 chr6 20383062 20383376 -129133661 - Lx6 LINE L1 -69 7391 7105 5 740 234 243 173 67 chr6 20383478 20383628 -129133409 - Lx4B LINE L1 -654 6404 6239 5 740 271 260 31 20 chr6 20384034 20384132 -129132905 - L1MC3 LINE L1 -1606 6179 6081 5 740 239 362 25 0 chr6 20384182 20384381 -129132656 - L1MC3 LINE L1 -2054 5941 5738 5 740 2600 152 46 4 chr6 20385834 20386295 -129130742 + Lx3B LINE L1 6484 6963 -10 5 740 297 0 0 0 chr6 20386295 20386328 -129130709 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 5 740 10830 69 9 0 chr6 20387393 20388821 -129128216 + L1Md_F2 LINE L1 4146 5586 -297 5 740 7038 74 36 1 chr6 20388821 20389771 -129127266 + L1Md_F2 LINE L1 5587 6569 -13 5 740 432 0 0 0 chr6 20389777 20389825 -129127212 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 5 740 1440 170 20 20 chr6 20391121 20391435 -129125602 + L1_Mur2 LINE L1 5050 5373 -474 5 740 503 0 0 31 chr6 20391435 20391499 -129125538 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 5 740 506 263 88 65 chr6 20391499 20391525 -129125512 + L1_Mur2 LINE L1 5374 5398 -449 5 740 1242 209 72 39 chr6 20391527 20391860 -129125177 + Lx2B LINE L1 6653 6996 -4 5 740 1393 284 82 24 chr6 20391861 20392178 -129124859 + Lx6 LINE L1 6968 7315 -145 5 740 279 0 0 0 chr6 20392178 20392209 -129124828 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 740 1393 284 82 24 chr6 20392209 20392342 -129124695 + Lx6 LINE L1 7316 7444 -16 5 740 425 341 51 24 chr6 20392342 20392597 -129124440 + Lx9 LINE L1 7209 7470 -174 5 740 204 97 0 0 chr6 20392993 20393024 -129124013 + (TTA)n Simple_repeat Simple_repeat 1 31 0 5 740 457 191 30 45 chr6 20393028 20393160 -129123877 - Lx3B LINE L1 -3 6970 6841 5 740 401 263 0 10 chr6 20393223 20393319 -129123718 - B1_Mur2 SINE Alu -8 141 47 5 740 969 122 0 26 chr6 20393571 20393722 -129123315 + B1_Mus2 SINE Alu 1 147 0 5 740 198 0 0 0 chr6 20393722 20393744 -129123293 + (A)n Simple_repeat Simple_repeat 1 22 0 5 740 1684 329 57 64 chr6 20394628 20395762 -129121275 - Lx5 LINE L1 -26 7434 5929 5 740 2698 179 9 15 chr6 20395763 20396410 -129120627 + RMER19A LTR ERVK 18 702 -35 5 740 637 176 0 0 chr6 20396423 20396531 -129120506 + RMER19A LTR ERVK 264 371 -366 5 740 288 106 21 0 chr6 20396524 20396571 -129120466 + RMER19A LTR ERVK 690 737 0 5 740 362 227 0 0 chr6 20396586 20396661 -129120376 - Lx7 LINE L1 -1787 5909 5835 5 740 257 68 23 0 chr6 20396661 20396705 -129120332 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 5 740 1103 44 0 7 chr6 20396705 20396841 -129120196 - B1_Mm SINE Alu -10 137 3 5 740 242 301 43 26 chr6 20397336 20397452 -129119585 - LTR80A LTR ERVL -21 562 445 5 740 1030 103 7 0 chr6 20397897 20398043 -129118994 + B1_Mus2 SINE Alu 1 147 0 5 740 201 74 0 0 chr6 20398046 20398073 -129118964 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 740 278 50 25 0 chr6 20398275 20398315 -129118722 + (TATG)n Simple_repeat Simple_repeat 2 42 0 5 740 400 358 71 44 chr6 20399037 20399262 -129117775 + MER70B LTR ERVL 35 265 -313 5 740 278 351 91 28 chr6 20399909 20400085 -129116952 - MLT2B3 LTR ERVL -101 453 267 5 740 252 272 10 61 chr6 20400767 20400865 -129116172 + MER3 DNA MER1_type 11 103 -106 5 740 491 0 17 0 chr6 20400896 20400955 -129116082 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 740 21 36 0 0 chr6 20401286 20401314 -129115723 + AT_rich Low_complexity Low_complexity 1 28 0 5 740 339 25 0 0 chr6 20401357 20401397 -129115640 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 740 440 344 30 0 chr6 20401495 20401626 -129115411 - ID_B1 SINE B4 -9 215 81 5 740 21 36 0 0 chr6 20401689 20401717 -129115320 + AT_rich Low_complexity Low_complexity 1 28 0 5 740 294 179 0 0 chr6 20401862 20401918 -129115119 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 740 274 265 85 8 chr6 20402197 20402315 -129114722 - Lx9 LINE L1 -1758 5886 5760 5 740 2558 152 198 8 chr6 20402396 20402900 -129114137 + MT2B LTR ERVL 1 600 -1 5 740 300 301 0 73 chr6 20402943 20403108 -129113929 + L1_Rod LINE L1 5532 5684 -163 5 740 180 0 0 0 chr6 20403154 20403174 -129113863 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 5 740 360 0 0 0 chr6 20403404 20403444 -129113593 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 740 5728 66 1 5 chr6 20404164 20404913 -129112124 - L1Md_F2 LINE L1 -122 5761 5016 5 740 6099 57 11 24 chr6 20404913 20405743 -129111294 + L1Md_F2 LINE L1 5752 6570 -12 5 740 817 357 58 53 chr6 20406390 20407191 -129109846 + MER54A LTR ERVL 9 886 -15 5 740 441 0 0 0 chr6 20407192 20407241 -129109796 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 740 252 0 0 0 chr6 20407241 20407268 -129109769 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 740 225 94 0 0 chr6 20407393 20407425 -129109612 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 740 301 210 32 0 chr6 20408423 20408485 -129108552 + ORR1D2 LTR MaLR 6 69 -301 5 740 527 189 164 26 chr6 20408502 20408654 -129108383 + ORR1D2 LTR MaLR 197 369 -1 5 740 195 162 0 0 chr6 20409161 20409198 -129107839 + T-rich Low_complexity Low_complexity 1 37 0 5 740 25 51 0 0 chr6 20409941 20409980 -129107057 + AT_rich Low_complexity Low_complexity 1 39 0 5 740 2911 150 22 6 chr6 20410104 20410608 -129106429 - Lx LINE L1 -2 6652 6141 5 740 348 157 14 0 chr6 20410608 20410678 -129106359 + Lx LINE L1 5995 6065 -589 5 740 24 0 0 0 chr6 20410746 20410770 -129106267 + AT_rich Low_complexity Low_complexity 1 24 0 5 740 739 266 64 132 chr6 20411841 20412295 -129104742 - RLTR23 LTR ERV1 -7 423 1 5 740 363 47 30 45 chr6 20412413 20412480 -129104557 + (CATA)n Simple_repeat Simple_repeat 1 66 0 5 740 437 374 0 87 chr6 20412634 20412842 -129104195 + B3A SINE B2 2 191 -7 5 740 357 125 0 0 chr6 20414093 20414149 -129102888 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 740 210 214 36 0 chr6 20414500 20414556 -129102481 + GA-rich Low_complexity Low_complexity 3 60 0 5 740 477 0 0 0 chr6 20415013 20415066 -129101971 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 740 363 60 0 0 chr6 20415066 20415116 -129101921 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 740 477 0 0 0 chr6 20415267 20415320 -129101717 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 740 2163 211 34 36 chr6 20415716 20415808 -129101229 - RLTR16 LTR ERVK 0 505 412 5 740 396 0 0 0 chr6 20415808 20415852 -129101185 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 740 2163 211 34 36 chr6 20415852 20416260 -129100777 - RLTR16 LTR ERVK -94 411 6 5 740 189 74 0 0 chr6 20416291 20416318 -129100719 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 5 740 714 236 7 0 chr6 20416320 20416460 -129100577 - B1_Mur3 SINE Alu -8 141 1 5 740 450 316 45 54 chr6 20416628 20416804 -129100233 - B3 SINE B2 -9 207 39 5 740 4562 191 48 18 chr6 20416833 20417421 -129099616 + L1_Mus3 LINE L1 364 983 -5651 5 740 833 92 0 8 chr6 20417421 20417552 -129099485 + L1_Mus1 LINE L1 6438 6567 0 5 740 19786 151 110 15 chr6 20417552 20422686 -129094351 + L1_Mus3 LINE L1 984 6631 -7 5 740 25 51 0 0 chr6 20422998 20423037 -129094000 + AT_rich Low_complexity Low_complexity 1 39 0 5 740 553 90 0 22 chr6 20423765 20423856 -129093181 + (GAAAA)n Simple_repeat Simple_repeat 2 90 0 5 740 22 0 0 0 chr6 20424446 20424468 -129092569 + AT_rich Low_complexity Low_complexity 1 22 0 5 740 302 345 122 0 chr6 20424952 20425091 -129091946 - HAL1-3A_ME LINE L1 -419 2439 2284 5 740 705 63 0 0 chr6 20425091 20425186 -129091851 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 5 740 2524 180 105 25 chr6 20425224 20425319 -129091718 - Lx5 LINE L1 -4 7046 6924 5 740 279 0 0 0 chr6 20425319 20425350 -129091687 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 740 2524 180 105 25 chr6 20425350 20425817 -129091220 - Lx5 LINE L1 -127 6923 6439 5 740 1290 142 84 11 chr6 20425817 20426080 -129090957 + L1_Mur2 LINE L1 4981 5262 -615 5 740 21 0 0 0 chr6 20426160 20426181 -129090856 + AT_rich Low_complexity Low_complexity 1 21 0 5 740 237 33 0 0 chr6 20426277 20426307 -129090730 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 740 641 114 9 0 chr6 20426307 20426412 -129090625 + (GA)n Simple_repeat Simple_repeat 1 106 0 5 740 698 34 0 11 chr6 20426631 20426721 -129090316 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 5 740 1090 113 10 36 chr6 20426849 20427042 -129089995 - L1_Mus3 LINE L1 -9 6629 6442 5 740 425 330 91 32 chr6 20427494 20427986 -129089051 - L1M4 LINE L1 -2570 3576 3029 5 740 464 283 80 40 chr6 20428064 20428371 -129088666 - L1M4 LINE L1 -3196 2950 2631 5 740 951 164 0 0 chr6 20428378 20428549 -129088488 + CT-rich Low_complexity Low_complexity 2 172 0 5 740 1198 61 0 0 chr6 20428550 20428697 -129088340 - B1_Mm SINE Alu 0 147 1 5 740 33 56 0 0 chr6 20429120 20429174 -129087863 + AT_rich Low_complexity Low_complexity 1 54 0 5 740 207 0 0 0 chr6 20429450 20429473 -129087564 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 740 598 194 54 39 chr6 20431407 20431536 -129085501 + MT2A LTR ERVL 33 163 -370 5 740 353 323 100 14 chr6 20431506 20431779 -129085258 + MT2A LTR ERVL 87 543 -41 5 740 231 143 0 23 chr6 20431843 20431886 -129085151 - Lx2B LINE L1 -289 6711 6670 5 740 3545 109 18 9 chr6 20431892 20432438 -129084599 - Lx3C LINE L1 -642 6334 5784 5 740 826 193 115 15 chr6 20432450 20432650 -129084387 + Lx4B LINE L1 5659 5878 -1180 6 740 1542 245 115 7 chr6 20432653 20433088 -129083949 + Lx2B LINE L1 6508 6989 -11 6 740 408 229 100 45 chr6 20434126 20434236 -129082801 + MTD LTR MaLR 301 416 -3 6 740 202 229 51 20 chr6 20434692 20434778 -129082259 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 740 299 113 0 19 chr6 20434778 20434832 -129082205 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 740 202 229 51 20 chr6 20434832 20434843 -129082194 + (TA)n Simple_repeat Simple_repeat 1 10 0 6 740 1838 140 17 75 chr6 20435516 20435863 -129081174 - ORR1A2 LTR MaLR 0 327 1 6 740 27 62 0 0 chr6 20437381 20437429 -129079608 + AT_rich Low_complexity Low_complexity 1 48 0 6 740 552 270 30 43 chr6 20437631 20437863 -129079174 - L1MA5 LINE L1 -326 5974 5746 6 740 675 239 54 22 chr6 20437934 20438118 -129078919 + B2_Mm2 SINE B2 4 193 -2 6 740 505 265 72 83 chr6 20439027 20439208 -129077829 + B3 SINE B2 14 192 -3 6 740 34 79 0 0 chr6 20440877 20440953 -129076084 + AT_rich Low_complexity Low_complexity 1 76 0 6 740 992 78 125 6 chr6 20441073 20441241 -129075796 + L1_Mus3 LINE L1 6436 6623 -15 6 740 847 64 0 0 chr6 20441241 20441351 -129075686 + B1_Mus1 SINE Alu 38 147 -1 6 740 32 26 0 0 chr6 20441361 20441400 -129075637 + AT_rich Low_complexity Low_complexity 1 39 0 6 740 1186 239 96 29 chr6 20441498 20441702 -129075335 - MTB_Mm LTR MaLR 0 407 181 6 740 4652 57 2 3 chr6 20441702 20442299 -129074738 - L1Md_F2 LINE L1 0 6582 5987 6 740 1186 239 96 29 chr6 20442299 20442439 -129074598 - MTB_Mm LTR MaLR -227 180 40 6 740 400 345 0 0 chr6 20442506 20442625 -129074412 - B3A SINE B2 -67 131 13 6 740 1058 111 17 11 chr6 20446644 20446818 -129070219 - L1Md_F2 LINE L1 -1 6581 6407 6 740 23 68 0 0 chr6 20447076 20447120 -129069917 + AT_rich Low_complexity Low_complexity 1 44 0 6 741 582 15 0 0 chr6 20448006 20448073 -129068964 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 741 344 59 20 0 chr6 20448073 20448123 -129068914 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 741 342 0 0 0 chr6 20448124 20448162 -129068875 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 741 180 97 0 0 chr6 20448180 20448211 -129068826 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 6 741 288 0 0 0 chr6 20448600 20448632 -129068405 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 6 741 349 289 113 26 chr6 20448739 20448934 -129068103 + L1MDb LINE L1 970 1181 -5228 6 741 236 361 102 10 chr6 20448940 20449028 -129068009 + PB1D10 SINE Alu 9 106 -11 6 741 195 42 0 0 chr6 20449028 20449052 -129067985 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 741 824 199 33 34 chr6 20449343 20449492 -129067545 + URR1B DNA MER1_type 1 170 -55 6 741 2802 88 39 0 chr6 20449492 20449877 -129067160 + MTB LTR MaLR 1 400 0 6 741 824 189 6 35 chr6 20449877 20449935 -129067102 + URR1B DNA MER1_type 171 225 0 6 741 219 69 0 0 chr6 20450053 20450082 -129066955 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 741 3251 148 34 16 chr6 20450329 20450885 -129066152 - Lx2 LINE L1 0 6997 6432 6 741 385 157 54 33 chr6 20450892 20450984 -129066053 + Lx LINE L1 6554 6647 -7 6 741 247 214 18 0 chr6 20451005 20451061 -129065976 - L1_Mur2 LINE L1 -951 4926 4870 6 741 252 0 0 0 chr6 20451111 20451139 -129065898 + (A)n Simple_repeat Simple_repeat 1 28 0 6 741 267 56 18 36 chr6 20451803 20451859 -129065178 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 6 741 408 54 0 0 chr6 20453637 20453693 -129063344 - L1_Mus2 LINE L1 -1 6565 6510 6 741 675 37 0 0 chr6 20453875 20453957 -129063080 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 741 761 349 10 30 chr6 20454001 20454305 -129062732 - Lx8 LINE L1 -690 6783 6486 6 741 623 322 21 17 chr6 20454403 20454643 -129062394 - Lx8 LINE L1 -972 6501 6261 6 741 672 262 30 15 chr6 20455610 20455808 -129061229 - LTR40a LTR ERVL 0 519 319 6 741 434 295 125 20 chr6 20457106 20457258 -129059779 - MTEa LTR MaLR -211 168 1 6 741 2174 115 57 10 chr6 20457300 20457686 -129059351 - Lx3A LINE L1 -745 6236 5833 6 741 4815 114 9 8 chr6 20457686 20458421 -129058616 + Lx3A LINE L1 6246 6981 0 6 741 441 0 0 0 chr6 20458462 20458511 -129058526 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 741 212 177 0 31 chr6 20458558 20458622 -129058415 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 6 741 742 71 8 16 chr6 20458700 20458828 -129058209 + (TTTTTG)n Simple_repeat Simple_repeat 6 132 0 6 741 1060 78 13 3 chr6 20458828 20458980 -129058057 - B1_Mus1 SINE Alu 0 148 1 6 741 225 260 8 8 chr6 20458872 20458996 -129058041 - ORR1B1-int LTR MaLR -755 754 631 6 741 573 88 0 0 chr6 20459080 20459160 -129057877 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 741 822 119 0 0 chr6 20459655 20459789 -129057248 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 6 741 347 232 0 50 chr6 20459942 20460042 -129056995 - Lx7 LINE L1 0 7696 7602 6 741 231 47 0 0 chr6 20460048 20460091 -129056946 + L1_Mus4 LINE L1 6592 6634 -2 6 741 952 294 113 14 chr6 20460113 20460620 -129056417 - Lx7 LINE L1 -441 7255 6652 6 741 2460 194 50 38 chr6 20460634 20460876 -129056161 - L1_Mur3 LINE L1 -1018 4862 4639 6 741 378 0 0 0 chr6 20460876 20460918 -129056119 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 741 2460 194 50 38 chr6 20460918 20461328 -129055709 - L1_Mur3 LINE L1 -1242 4638 4202 6 741 2603 57 33 0 chr6 20461459 20461794 -129055243 + ORR1A0 LTR MaLR 1 346 0 6 741 1050 0 0 0 chr6 20463010 20463140 -129053897 - L1Md_T LINE L1 0 6582 6453 6 741 823 350 51 2 chr6 20463164 20463573 -129053464 + Lx8 LINE L1 6840 7268 -205 6 741 323 306 70 65 chr6 20464550 20464749 -129052288 + L1ME2 LINE L1 5816 6015 -149 6 741 303 293 10 20 chr6 20465485 20465586 -129051451 - MLT1B LTR MaLR -59 331 232 6 741 330 279 29 0 chr6 20466151 20466255 -129050782 - Lx7 LINE L1 -371 7325 7219 6 741 231 114 0 0 chr6 20466286 20466321 -129050716 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 6 741 399 190 0 20 chr6 20466355 20466457 -129050580 - Lx7 LINE L1 -159 7537 7438 6 741 446 49 16 0 chr6 20467132 20467193 -129049844 + (TTA)n Simple_repeat Simple_repeat 2 63 0 6 741 25 0 0 0 chr6 20468131 20468156 -129048881 + AT_rich Low_complexity Low_complexity 1 25 0 6 741 697 138 13 0 chr6 20468408 20468567 -129048470 + (TCTA)n Simple_repeat Simple_repeat 2 162 0 6 741 286 86 0 100 chr6 20468778 20468868 -129048169 + A-rich Low_complexity Low_complexity 2 82 0 6 741 288 298 36 0 chr6 20468927 20469011 -129048026 + L1M4c LINE L1 262 348 -6036 6 741 2483 200 90 30 chr6 20469011 20469299 -129047738 - RMER6C LTR ERVK -4 686 373 6 741 396 55 0 0 chr6 20469299 20469354 -129047683 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 6 741 2483 200 90 30 chr6 20469354 20469709 -129047328 - RMER6C LTR ERVK -318 372 4 6 741 28 29 0 0 chr6 20469734 20469769 -129047268 + AT_rich Low_complexity Low_complexity 1 35 0 6 741 610 320 60 23 chr6 20469864 20470216 -129046821 - Lx9 LINE L1 -178 7466 7102 6 741 243 374 93 8 chr6 20470264 20470523 -129046514 + L1M4c LINE L1 412 692 -5692 6 741 874 230 163 21 chr6 20470527 20471007 -129046030 + Lx9 LINE L1 6998 7545 -99 6 741 2566 102 3 0 chr6 20471006 20471360 -129045677 + L1Md_F LINE L1 275 629 -5890 6 741 1243 13 0 7 chr6 20471396 20471546 -129045491 + L1Md_F3 LINE L1 6417 6565 -19 6 741 282 278 85 3 chr6 20471638 20471807 -129045230 - L1M4 LINE L1 -1056 5090 4901 6 741 334 312 49 49 chr6 20472139 20472301 -129044736 - L1M4 LINE L1 -1446 4700 4539 6 741 929 94 0 8 chr6 20472306 20472434 -129044603 + B1_Mus1 SINE Alu 1 127 -21 6 741 261 0 0 0 chr6 20472672 20472701 -129044336 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 741 13453 120 40 2 chr6 20473093 20475898 -129041139 - L1_Mus3 LINE L1 -6 6632 3722 6 741 4612 264 85 32 chr6 20476024 20477113 -129039924 + Lx7 LINE L1 6064 7225 -471 6 741 1052 162 0 6 chr6 20477113 20477293 -129039744 - B2_Mm2 SINE B2 -14 181 3 6 741 4612 264 85 32 chr6 20477293 20477512 -129039525 + Lx7 LINE L1 7226 7435 -261 6 741 225 0 0 0 chr6 20477512 20477537 -129039500 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 741 4612 264 85 32 chr6 20477537 20477777 -129039260 + Lx7 LINE L1 7436 7696 0 6 741 814 251 67 29 chr6 20477966 20478175 -129038862 + MTC LTR MaLR 10 226 -195 6 741 35520 36 13 8 chr6 20478176 20483371 -129033666 + L1Md_T LINE L1 367 5586 -297 6 741 8150 43 0 12 chr6 20483372 20484326 -129032711 + L1Md_T LINE L1 5588 6537 -45 6 741 3337 25 5 2 chr6 20484326 20484721 -129032316 + MTA_Mm LTR MaLR 1 396 0 6 741 9188 32 4 1 chr6 20484721 20485816 -129031221 + MTA_Mm-int LTR MaLR 1 1098 0 6 741 3298 30 5 2 chr6 20485816 20486211 -129030826 + MTA_Mm LTR MaLR 1 396 0 6 741 8150 43 0 12 chr6 20486211 20486261 -129030776 + L1Md_T LINE L1 6538 6580 -2 6 741 693 290 83 20 chr6 20486267 20486471 -129030566 + MTC LTR MaLR 196 412 -9 6 741 3784 217 134 57 chr6 20486475 20486858 -129030179 + MTC-int LTR MaLR 2 393 -865 6 741 4000 68 4 8 chr6 20486858 20487393 -129029644 + L1Md_F2 LINE L1 6050 6582 0 6 741 3784 217 134 57 chr6 20487393 20488176 -129028861 + MTC-int LTR MaLR 394 1258 0 6 741 1619 237 61 29 chr6 20488176 20488584 -129028453 + MTC LTR MaLR 1 421 0 6 741 494 298 61 80 chr6 20488584 20488625 -129028412 - L1M4c LINE L1 -5083 1301 1269 6 741 414 0 0 0 chr6 20488625 20488671 -129028366 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 741 494 298 61 80 chr6 20488671 20489239 -129027798 - L1M4c LINE L1 -5116 1268 704 6 741 323 248 0 10 chr6 20489270 20489372 -129027665 - Lx9 LINE L1 -8 7636 7536 6 741 35309 60 4 6 chr6 20489380 20494867 -129022170 - L1Md_F2 LINE L1 -11 6571 1105 6 741 35868 41 0 0 chr6 20494868 20500000 -129017037 - L1Md_T LINE L1 0 6582 1449 6 741 6573 73 1 24 chr6 20500000 20501086 -129015951 - L1Md_Gf LINE L1 -4435 1451 285 1 741 1904 207 137 15 chr6 20501088 20501696 -129015341 - L1Md_A LINE L1 -5576 1148 467 2 741 943 58 0 14 chr6 20501900 20502041 -129014996 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 3 741 7660 56 5 1 chr6 20502957 20503929 -129013108 + L1Md_F3 LINE L1 5607 6582 -2 4 741 402 361 76 44 chr6 20504470 20504745 -129012292 + MLT1A0 LTR MaLR 1 284 -81 5 741 248 295 140 7 chr6 20504960 20505110 -129011927 + RMER15 LTR ERVL 362 531 -44 6 741 282 56 0 0 chr6 20505938 20505974 -129011063 + (TA)n Simple_repeat Simple_repeat 2 37 0 7 741 476 146 0 11 chr6 20507149 20507239 -129009798 + CT-rich Low_complexity Low_complexity 4 92 0 8 741 973 136 0 11 chr6 20507246 20507425 -129009612 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 9 741 314 289 117 55 chr6 20507425 20507553 -129009484 - B1_Mur1 SINE Alu -12 137 2 1 741 5208 87 35 40 chr6 20507674 20508455 -129008582 + L1_Mus2 LINE L1 5789 6565 -1 1 741 26 64 0 0 chr6 20508521 20508568 -129008469 + AT_rich Low_complexity Low_complexity 1 47 0 1 741 7432 173 45 4 chr6 20508568 20509243 -129007794 - Lx2 LINE L1 -1 6996 6305 1 741 423 0 0 0 chr6 20509243 20509290 -129007747 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 741 7432 174 50 4 chr6 20509290 20510030 -129007007 - Lx2 LINE L1 -693 6304 5528 1 741 3340 175 75 4 chr6 20510037 20510732 -129006305 - Lx2 LINE L1 -846 5040 4297 1 741 827 268 31 23 chr6 20513056 20513316 -129003721 + Lx7 LINE L1 328 589 -7139 1 741 2425 233 75 41 chr6 20513312 20514001 -129003036 + Lx7 LINE L1 6678 7390 -306 1 741 1202 221 14 75 chr6 20514038 20514400 -129002637 + Lx7 LINE L1 7357 7696 0 1 741 417 253 0 11 chr6 20514835 20514923 -129002114 + ID_B1 SINE B4 84 170 -54 1 741 648 64 0 0 chr6 20515685 20515779 -129001258 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 741 222 171 0 0 chr6 20515907 20515948 -129001089 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1 741 873 179 0 106 chr6 20516094 20516282 -129000755 + ORR1C1 LTR MaLR 3 170 -208 2 741 229 167 48 0 chr6 20516281 20516323 -129000714 + ORR1C1 LTR MaLR 335 378 0 2 741 616 295 109 25 chr6 20516363 20516721 -129000316 - L1M3 LINE L1 -1982 4158 3771 2 741 195 100 0 0 chr6 20516732 20516762 -129000275 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 741 3600 162 25 11 chr6 20516762 20517403 -128999634 - Lx4A LINE L1 -4 7054 6405 2 741 204 37 0 0 chr6 20517422 20517435 -128999602 + (T)n Simple_repeat Simple_repeat 1 13 0 2 741 1150 55 0 7 chr6 20517435 20517583 -128999454 - B1_Mm SINE Alu 0 147 1 2 741 204 37 0 0 chr6 20517583 20517596 -128999441 + (T)n Simple_repeat Simple_repeat 1 13 0 2 741 233 291 31 16 chr6 20517980 20518109 -128998928 - Lx9 LINE L1 -7 7637 7507 2 741 26 82 0 0 chr6 20518186 20518247 -128998790 + AT_rich Low_complexity Low_complexity 1 61 0 2 741 4160 160 78 28 chr6 20518934 20519869 -128997168 - Lx2 LINE L1 0 6997 5784 2 741 24 53 0 0 chr6 20520518 20520556 -128996481 + AT_rich Low_complexity Low_complexity 1 38 0 3 741 258 156 0 0 chr6 20520603 20520648 -128996389 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 741 234 276 49 62 chr6 20520947 20521028 -128996009 - PB1D10 SINE Alu -60 89 10 3 741 330 266 114 21 chr6 20521135 20521301 -128995736 + MLT1B LTR MaLR 257 467 0 3 741 343 275 41 8 chr6 20522133 20522254 -128994783 + MER67D LTR ERV1 6 130 -384 3 741 598 331 22 61 chr6 20522277 20522554 -128994483 - ORR1E LTR MaLR -6 353 88 3 741 1373 274 12 3 chr6 20522591 20522931 -128994106 + MT2A LTR ERVL 118 460 -73 3 741 324 0 0 0 chr6 20522931 20522967 -128994070 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 741 387 0 0 0 chr6 20522967 20523009 -128994028 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 741 180 77 0 0 chr6 20523009 20523034 -128994003 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 741 24 53 0 0 chr6 20525722 20525760 -128991277 + AT_rich Low_complexity Low_complexity 1 38 0 4 741 228 314 58 25 chr6 20526230 20526351 -128990686 + RMER5 LTR ERV1 248 372 -162 4 741 22 0 0 0 chr6 20526601 20526623 -128990414 + AT_rich Low_complexity Low_complexity 1 22 0 4 741 1510 334 39 14 chr6 20526671 20527306 -128989731 - Lx8 LINE L1 -198 7275 6625 4 741 7941 47 1 2 chr6 20527307 20528416 -128988621 - L1Md_F2 LINE L1 0 6582 5476 4 741 349 301 53 36 chr6 20528544 20528881 -128988156 - L1M2 LINE L1 -609 5682 5340 4 741 423 336 52 38 chr6 20528938 20529303 -128987734 + L1M2 LINE L1 4685 5054 -1089 4 741 313 303 101 93 chr6 20529351 20529609 -128987428 + L1M2 LINE L1 5074 5333 -810 4 741 26 64 0 0 chr6 20529661 20529708 -128987329 + AT_rich Low_complexity Low_complexity 1 47 0 4 741 319 345 53 53 chr6 20530691 20530991 -128986046 + RLTR15 LTR ERVK 45 344 -15 4 741 5300 203 33 29 chr6 20531792 20533138 -128983899 + Lx4B LINE L1 5587 6926 -71 4 741 25 65 0 0 chr6 20533143 20533189 -128983848 + AT_rich Low_complexity Low_complexity 1 46 0 5 741 27864 126 28 40 chr6 20533207 20536973 -128980064 + L1_Mus1 LINE L1 584 4426 -1457 5 741 3631 73 8 6 chr6 20536973 20537457 -128979580 + L1Md_F2 LINE L1 6097 6581 -1 5 741 27864 104 11 27 chr6 20537457 20539767 -128977270 + L1_Mus1 LINE L1 4427 6567 0 5 741 21 57 0 0 chr6 20539767 20539802 -128977235 + AT_rich Low_complexity Low_complexity 1 35 0 5 741 310 183 43 17 chr6 20539827 20539944 -128977093 + (TA)n Simple_repeat Simple_repeat 1 120 0 5 741 22 35 0 0 chr6 20540304 20540333 -128976704 + AT_rich Low_complexity Low_complexity 1 29 0 5 741 27 0 0 0 chr6 20541421 20541448 -128975589 + AT_rich Low_complexity Low_complexity 1 27 0 5 741 1059 246 29 0 chr6 20541449 20541693 -128975344 - Lx6 LINE L1 -14 7446 7196 5 741 576 0 0 0 chr6 20543097 20543161 -128973876 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 741 308 148 16 0 chr6 20543903 20543964 -128973073 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 741 23 33 0 0 chr6 20544009 20544039 -128972998 + AT_rich Low_complexity Low_complexity 1 30 0 6 741 241 333 82 14 chr6 20544134 20544280 -128972757 - Lx8 LINE L1 -84 7389 7234 6 741 27 62 0 0 chr6 20544301 20544349 -128972688 + AT_rich Low_complexity Low_complexity 1 48 0 6 741 266 327 35 17 chr6 20544496 20544611 -128972426 + Lx9 LINE L1 7323 7439 -205 6 741 613 273 36 52 chr6 20544700 20545218 -128971819 - RLTR11A2 LTR ERVK -30 498 3 6 741 340 259 196 15 chr6 20545431 20545564 -128971473 + B3 SINE B2 60 216 0 6 741 1184 312 69 77 chr6 20545564 20545741 -128971296 + Lx9 LINE L1 6522 6705 -939 6 741 1205 54 12 0 chr6 20545741 20545909 -128971128 + L1_Mus1 LINE L1 6398 6567 0 6 741 1184 312 69 77 chr6 20545909 20546460 -128970577 + Lx9 LINE L1 6706 7244 -400 6 741 223 415 32 8 chr6 20546625 20546749 -128970288 - L2b LINE L2 -202 3173 3047 6 741 368 276 96 6 chr6 20547061 20547218 -128969819 - Lx9 LINE L1 -468 7176 7006 6 741 433 259 66 6 chr6 20547280 20547464 -128969573 - Lx8 LINE L1 -1545 5928 5733 7 741 207 0 0 0 chr6 20548334 20548357 -128968680 + (TA)n Simple_repeat Simple_repeat 2 24 0 7 741 525 16 0 0 chr6 20548357 20548418 -128968619 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 741 644 282 205 74 chr6 20548586 20549041 -128967996 + RMER20B LTR ERVK 95 586 -41 7 741 22 0 0 0 chr6 20550682 20550704 -128966333 + AT_rich Low_complexity Low_complexity 1 22 0 7 741 26 0 0 0 chr6 20550816 20550842 -128966195 + AT_rich Low_complexity Low_complexity 1 26 0 7 741 345 307 47 73 chr6 20550982 20551214 -128965823 - L1ME1 LINE L1 -158 6021 5796 7 741 237 288 112 0 chr6 20551254 20551334 -128965703 + RSINE1 SINE B4 16 104 -61 7 741 215 273 0 11 chr6 20551578 20551605 -128965432 + A-rich Low_complexity Low_complexity 2 27 0 7 741 1092 86 0 0 chr6 20551605 20551744 -128965293 + B1_Mus2 SINE Alu 1 139 -8 7 741 206 263 32 0 chr6 20551744 20551839 -128965198 + (TA)n Simple_repeat Simple_repeat 1 98 0 8 741 2421 148 9 12 chr6 20552200 20552631 -128964406 - Lx LINE L1 0 6654 6225 8 741 33 73 0 0 chr6 20552723 20552791 -128964246 + AT_rich Low_complexity Low_complexity 1 68 0 8 741 896 188 62 13 chr6 20552999 20553129 -128963908 - RMER17C LTR ERVK 0 410 271 8 741 228 35 0 0 chr6 20553129 20553158 -128963879 + (TATCG)n Simple_repeat Simple_repeat 3 31 0 8 741 896 188 62 13 chr6 20553158 20553253 -128963784 - RMER17C LTR ERVK -140 270 175 8 741 577 174 28 0 chr6 20553247 20553356 -128963681 - ORR1A1 LTR MaLR -234 112 1 8 741 21 68 0 17 chr6 20553379 20553397 -128963640 + AT_rich Low_complexity Low_complexity 1 18 0 8 741 2878 150 60 6 chr6 20553397 20553899 -128963138 - Lx3C LINE L1 -3 6973 6445 8 741 21 68 0 17 chr6 20553899 20553940 -128963097 + AT_rich Low_complexity Low_complexity 1 41 0 8 741 581 100 11 0 chr6 20554829 20554919 -128962118 + (TTA)n Simple_repeat Simple_repeat 3 93 0 8 741 31 0 0 0 chr6 20555574 20555605 -128961432 + AT_rich Low_complexity Low_complexity 1 31 0 9 741 436 295 9 0 chr6 20555634 20555746 -128961291 - B1_Mur2 SINE Alu -5 144 32 9 741 438 306 104 52 chr6 20555849 20556194 -128960843 + L1MD LINE L1 3210 3572 -2574 9 741 881 271 90 113 chr6 20556204 20556584 -128960453 + ORR1E LTR MaLR 4 374 0 9 741 355 346 33 50 chr6 20556692 20557074 -128959963 + L1MD LINE L1 3668 4044 -2102 9 741 312 239 69 112 chr6 20557061 20557221 -128959816 + L1M5 LINE L1 4119 4271 -1875 9 741 692 262 59 5 chr6 20557225 20557428 -128959609 - B3 SINE B2 -1 215 2 9 741 32355 89 4 10 chr6 20557759 20562957 -128954080 + L1Md_F2 LINE L1 420 5585 -298 9 741 7470 72 2 3 chr6 20562958 20563954 -128953083 + L1Md_F2 LINE L1 5587 6581 -1 9 741 2853 201 31 13 chr6 20564033 20564647 -128952390 - Lx2B LINE L1 -14 6986 6362 9 741 701 255 59 10 chr6 20564649 20564851 -128952186 + Lx2B LINE L1 6788 6999 -1 9 741 307 285 6 62 chr6 20565798 20565975 -128951062 + L1MD LINE L1 5681 5853 -389 9 741 464 330 47 0 chr6 20566647 20566838 -128950199 + B3 SINE B2 2 201 -15 1 741 24 53 0 0 chr6 20566916 20566954 -128950083 + AT_rich Low_complexity Low_complexity 1 38 0 1 741 321 352 56 49 chr6 20567075 20567359 -128949678 - Charlie20a DNA Charlie -400 407 122 1 741 1692 76 0 97 chr6 20567906 20567982 -128949055 - MusHAL1 LINE L1 -1121 1591 1542 1 741 1112 88 0 0 chr6 20567982 20568129 -128948908 - B1_Mus1 SINE Alu -1 147 1 1 741 1692 76 0 97 chr6 20568129 20568330 -128948707 - MusHAL1 LINE L1 -1171 1541 1341 1 741 1260 56 39 0 chr6 20568328 20568507 -128948530 + MusHAL1 LINE L1 1623 1808 -904 1 741 1345 175 21 49 chr6 20568507 20568795 -128948242 - RLTR46 LTR ERVK 0 320 41 1 741 2199 75 43 3 chr6 20568807 20569153 -128947884 + MusHAL1 LINE L1 1800 2159 -553 1 741 4084 157 3 26 chr6 20569150 20569904 -128947133 + L1_Mm LINE L1 4295 5030 -853 1 741 2194 145 76 80 chr6 20569905 20570198 -128946839 + RLTR31B_Mm LTR ERVK 1 285 -272 1 741 1062 144 22 11 chr6 20570198 20570381 -128946656 + B2_Mm2 SINE B2 3 187 -8 1 741 2194 145 76 80 chr6 20570381 20570560 -128946477 + RLTR31B_Mm LTR ERVK 286 471 -86 1 741 1526 204 84 87 chr6 20570591 20571049 -128945988 + RMER16 LTR ERVK 1 533 0 1 741 3349 152 88 22 chr6 20571049 20571186 -128945851 + RMER16-int LTR ERVK 1 158 -5248 1 741 261 0 0 0 chr6 20571186 20571215 -128945822 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 741 3349 152 88 22 chr6 20571215 20571721 -128945316 + RMER16-int LTR ERVK 159 686 -4720 1 741 23285 112 35 15 chr6 20571717 20575315 -128941722 + RMER16-int LTR ERVK 929 4599 -807 1 741 573 55 0 0 chr6 20575459 20575532 -128941505 + (TC)n Simple_repeat Simple_repeat 1 73 0 1 741 5221 122 6 12 chr6 20575642 20576457 -128940580 + RMER16-int LTR ERVK 4595 5404 -2 1 741 1217 237 58 48 chr6 20576499 20576915 -128940122 + RMER16 LTR ERVK 114 533 0 1 741 1821 154 9 43 chr6 20576915 20577145 -128939892 + L1_Mur2 LINE L1 5035 5261 -616 1 741 2426 128 33 15 chr6 20577145 20577543 -128939494 + RLTR9E LTR ERVK 1 405 -4 1 741 1821 154 9 43 chr6 20577543 20577659 -128939378 + L1_Mur2 LINE L1 5262 5369 -508 1 741 2779 124 21 0 chr6 20577646 20578073 -128938964 - L1_Mus1 LINE L1 -410 6156 5721 1 92 2578 82 3 0 chr6 20578073 20578426 -128938611 + L1_Mus1 LINE L1 6214 6567 0 1 742 2457 197 9 32 chr6 20578438 20578968 -128938069 + L1_Mm LINE L1 5357 5874 -9 1 742 33161 84 8 8 chr6 20578972 20585158 -128931879 + L1Md_F2 LINE L1 368 6558 -24 1 742 4412 152 31 5 chr6 20585169 20585942 -128931095 + Lx LINE L1 5862 6654 0 1 742 21 0 0 0 chr6 20586168 20586189 -128930848 + AT_rich Low_complexity Low_complexity 1 21 0 1 742 36 70 0 0 chr6 20586316 20586387 -128930650 + AT_rich Low_complexity Low_complexity 1 71 0 1 742 25 99 0 0 chr6 20586544 20586625 -128930412 + AT_rich Low_complexity Low_complexity 1 81 0 1 742 24 53 0 0 chr6 20587258 20587296 -128929741 + AT_rich Low_complexity Low_complexity 1 38 0 1 742 22 35 0 0 chr6 20588384 20588413 -128928624 + AT_rich Low_complexity Low_complexity 1 29 0 1 742 718 298 95 84 chr6 20588646 20589013 -128928024 + MTE2a LTR MaLR 9 379 0 1 742 252 0 0 0 chr6 20590493 20590521 -128926516 + (T)n Simple_repeat Simple_repeat 1 28 0 1 742 23 0 0 0 chr6 20591770 20591793 -128925244 + AT_rich Low_complexity Low_complexity 1 23 0 1 742 198 0 0 0 chr6 20591985 20592007 -128925030 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 742 21 36 0 0 chr6 20592959 20592987 -128924050 + AT_rich Low_complexity Low_complexity 1 28 0 1 742 1494 282 56 15 chr6 20594666 20595242 -128921795 + Lx6 LINE L1 5727 6373 -685 1 742 5470 171 12 1 chr6 20595237 20596253 -128920784 - L1_Mm LINE L1 -753 5130 4104 1 742 4222 160 37 8 chr6 20596256 20597060 -128919977 + L1_Mur2 LINE L1 3253 4080 -1797 1 742 1153 329 93 28 chr6 20597067 20597366 -128919671 + Lx6 LINE L1 6947 7150 -310 1 742 4810 172 38 5 chr6 20597366 20598220 -128918817 - Lx2 LINE L1 -1 6996 6115 1 742 1153 298 101 25 chr6 20598220 20598440 -128918597 + Lx6 LINE L1 7151 7383 -77 1 742 637 34 0 0 chr6 20598454 20598542 -128918495 + MTA_Mm-int LTR MaLR 1011 1098 0 1 742 2441 14 0 0 chr6 20598542 20598831 -128918206 + MTA_Mm LTR MaLR 1 289 -107 1 742 3381 120 30 9 chr6 20598848 20599386 -128917651 + L1_Mus4 LINE L1 6088 6636 0 1 742 428 0 19 0 chr6 20599399 20599451 -128917586 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1 742 1061 251 64 20 chr6 20601751 20602109 -128914928 + ORR1D1 LTR MaLR 1 374 0 1 742 868 289 98 63 chr6 20602427 20602913 -128914124 - MT2B LTR ERVL -3 598 6 1 742 289 269 120 0 chr6 20603197 20603305 -128913732 + ID_B1 SINE B4 104 224 0 1 742 357 127 29 29 chr6 20603313 20603418 -128913619 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 1 742 23 68 0 0 chr6 20603461 20603505 -128913532 + AT_rich Low_complexity Low_complexity 1 44 0 1 742 809 357 33 18 chr6 20603788 20604241 -128912796 - Lx8 LINE L1 -195 7278 6819 1 742 342 253 21 10 chr6 20604239 20604335 -128912702 - L1_Rod LINE L1 -658 5189 5093 1 742 1757 117 42 60 chr6 20604406 20604742 -128912295 + Lx LINE L1 6325 6654 0 1 742 2059 159 42 3 chr6 20604838 20605217 -128911820 + Lx3B LINE L1 6576 6969 -4 1 742 516 156 0 0 chr6 20606046 20606136 -128910901 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 1 742 1060 104 0 0 chr6 20606140 20606284 -128910753 - B1_Mus1 SINE Alu -4 144 1 1 742 8352 106 58 47 chr6 20606746 20607763 -128909274 - Lx3_Mus LINE L1 -8 7001 5910 1 742 185 0 40 0 chr6 20607763 20607788 -128909249 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 742 8352 92 11 132 chr6 20607788 20608282 -128908755 - Lx3_Mus LINE L1 -1100 5909 5478 1 742 2629 89 5 43 chr6 20608280 20608703 -128908334 + Lx3_Mus LINE L1 5099 5505 -381 1 742 2763 193 99 14 chr6 20609338 20609974 -128907063 - RMER6C LTR ERVK 0 690 1 1 742 1141 180 9 26 chr6 20610725 20610953 -128906084 - URR1B DNA MER1_type -1 224 1 1 742 678 227 87 123 chr6 20611425 20611840 -128905197 - RMER2 LTR ERV1 -23 544 1 1 742 247 332 37 73 chr6 20612244 20612462 -128904575 + MLT1E LTR MaLR 436 645 -8 1 742 477 120 0 0 chr6 20612897 20612989 -128904048 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 742 1608 289 60 16 chr6 20613328 20613883 -128903154 + RCHARR1 DNA MER1_type 1 579 -395 1 742 392 156 0 9 chr6 20613883 20613993 -128903044 + CT-rich Low_complexity Low_complexity 2 110 0 1 742 231 173 0 0 chr6 20614122 20614174 -128902863 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 1 742 183 156 0 0 chr6 20614175 20614207 -128902830 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 1 742 220 262 0 0 chr6 20614219 20614261 -128902776 - PB1D10 SINE Alu -41 76 35 1 742 23 54 0 0 chr6 20614939 20614976 -128902061 + AT_rich Low_complexity Low_complexity 1 37 0 1 742 1779 174 47 1 chr6 20614980 20615348 -128901689 - L1_Mur2 LINE L1 -100 5783 5362 1 742 4583 165 51 11 chr6 20615350 20616172 -128900865 + Lx4A LINE L1 6199 7053 -5 1 742 762 231 114 54 chr6 20616204 20616502 -128900535 - Lx7 LINE L1 -16 7680 7365 1 742 528 140 0 0 chr6 20616506 20616613 -128900424 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 1 742 3182 270 82 21 chr6 20616663 20616855 -128900182 - Lx7 LINE L1 -337 7359 7159 1 742 432 0 0 0 chr6 20616855 20616903 -128900134 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 742 3182 270 82 21 chr6 20616903 20617704 -128899333 - Lx7 LINE L1 -538 7158 6306 1 742 276 30 0 0 chr6 20618394 20618427 -128898610 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 742 247 258 91 0 chr6 20618430 20618496 -128898541 - ID SINE ID -144 80 9 1 742 411 21 0 0 chr6 20618747 20618795 -128898242 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 742 216 218 36 0 chr6 20619004 20619059 -128897978 + CT-rich Low_complexity Low_complexity 2 58 0 1 742 252 59 0 0 chr6 20619091 20619125 -128897912 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 742 384 326 69 30 chr6 20619264 20619758 -128897279 + L1MC3 LINE L1 6961 7473 -312 1 742 315 292 53 80 chr6 20619774 20620038 -128896999 + L1MC3 LINE L1 7521 7777 -8 1 742 231 36 0 0 chr6 20620234 20620262 -128896775 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 742 5626 112 14 8 chr6 20620264 20621101 -128895936 - Lx3A LINE L1 -16 6965 6124 1 742 367 281 34 3 chr6 20621106 20621208 -128895829 - RLTR20A1 LTR ERVK -55 523 387 1 742 918 330 116 9 chr6 20621757 20622341 -128894696 + Lx8 LINE L1 6822 7468 -5 1 742 217 306 45 45 chr6 20622436 20622525 -128894512 + RSINE1 SINE B4 77 165 0 1 742 271 234 36 66 chr6 20622636 20622773 -128894264 - Lx7 LINE L1 -2 7694 7562 1 742 225 0 0 0 chr6 20622784 20622809 -128894228 + (A)n Simple_repeat Simple_repeat 1 25 0 1 742 273 75 0 0 chr6 20622816 20622856 -128894181 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 742 249 182 0 0 chr6 20622882 20622937 -128894100 + GA-rich Low_complexity Low_complexity 4 58 0 1 742 26 30 0 0 chr6 20624075 20624108 -128892929 + AT_rich Low_complexity Low_complexity 1 33 0 1 742 467 230 94 47 chr6 20624111 20624239 -128892798 + B1_Mur2 SINE Alu 15 148 -1 1 742 31 58 0 0 chr6 20624814 20624866 -128892171 + AT_rich Low_complexity Low_complexity 1 52 0 1 742 239 73 73 0 chr6 20625333 20625388 -128891649 + (CATA)n Simple_repeat Simple_repeat 1 59 0 1 742 443 352 20 10 chr6 20625480 20625681 -128891356 - MLT2C1 LTR ERVL -145 252 50 1 742 27 0 0 0 chr6 20626045 20626072 -128890965 + AT_rich Low_complexity Low_complexity 1 27 0 1 742 622 188 62 14 chr6 20626264 20626410 -128890627 + Lx4A LINE L1 6900 7052 -6 1 742 1009 306 166 20 chr6 20626816 20627322 -128889715 + Tigger1 DNA MER2_type 2 581 -1837 1 742 436 375 40 10 chr6 20627579 20627781 -128889256 + B4A SINE B4 65 272 -20 1 742 426 20 0 0 chr6 20627826 20627877 -128889160 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 742 211 294 64 21 chr6 20628648 20628742 -128888295 + L2c LINE L2 3270 3367 -20 1 742 343 52 17 17 chr6 20628936 20628995 -128888042 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 742 1112 65 0 0 chr6 20628995 20629133 -128887904 - B1_Mm SINE Alu -9 138 1 1 742 195 244 0 0 chr6 20629401 20629479 -128887558 + GA-rich Low_complexity Low_complexity 2 79 0 1 742 215 174 22 0 chr6 20629670 20629716 -128887321 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 1 742 402 297 64 80 chr6 20629868 20630276 -128886761 + L1MA5 LINE L1 5218 5649 -642 1 742 1020 269 106 26 chr6 20630281 20630621 -128886416 - ORR1D1 LTR MaLR 0 374 8 1 742 342 182 0 0 chr6 20630640 20630706 -128886331 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 742 690 304 81 19 chr6 20630715 20631235 -128885802 + L1MA5 LINE L1 5656 6207 -93 1 742 474 216 0 51 chr6 20631357 20631533 -128885504 + Lx9 LINE L1 7478 7644 0 1 742 272 232 77 39 chr6 20631597 20631727 -128885310 + L1MB1 LINE L1 6033 6167 -1 1 742 807 21 0 0 chr6 20631868 20631965 -128885072 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 742 5835 101 13 2 chr6 20633352 20634188 -128882849 - L1_Mus4 LINE L1 -1 6635 5791 2 742 1621 75 0 0 chr6 20634192 20634453 -128882584 - L1_Mus1 LINE L1 0 6567 6350 2 742 2568 70 6 0 chr6 20634453 20634780 -128882257 + L1_Mus1 LINE L1 6026 6354 -213 2 742 7224 166 41 77 chr6 20634773 20635643 -128881394 - L1_Mm LINE L1 -87 5796 4911 2 742 592 136 11 0 chr6 20635643 20635731 -128881306 + B1_Mus1 SINE Alu 2 90 -58 2 742 7224 166 41 77 chr6 20635731 20636382 -128880655 - L1_Mm LINE L1 -87 4910 4246 2 742 2643 90 51 15 chr6 20636414 20636809 -128880228 - RLTR9E LTR ERVK 0 409 1 2 742 503 70 0 40 chr6 20636815 20636890 -128880147 - ETnERV2-int LTR ERVK -4 7402 7331 2 742 1348 132 15 5 chr6 20637101 20637307 -128879730 - ETnERV2-int LTR ERVK -977 6429 6222 2 742 3949 92 16 7 chr6 20637345 20637905 -128879132 - ETnERV2-int LTR ERVK -1166 6240 5676 2 742 29 47 0 0 chr6 20638034 20638077 -128878960 + AT_rich Low_complexity Low_complexity 1 43 0 2 742 984 244 50 0 chr6 20638251 20638524 -128878513 + Lx6 LINE L1 6281 6589 -1107 2 742 288 193 138 17 chr6 20639467 20639583 -128877454 - Lx9 LINE L1 0 7644 7515 2 742 4410 170 45 45 chr6 20640415 20641376 -128875661 + RMER17B LTR ERVK 1 953 -5 2 742 10372 114 13 32 chr6 20641724 20642920 -128874117 - MusHAL1 LINE L1 -294 2418 1259 2 742 318 26 0 0 chr6 20642920 20642959 -128874078 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 742 10372 114 13 32 chr6 20642959 20643532 -128873505 - MusHAL1 LINE L1 -1454 1258 682 2 742 2725 102 28 12 chr6 20643532 20643957 -128873080 + L1_Mus4 LINE L1 6205 6636 0 2 742 212 205 25 37 chr6 20644041 20644122 -128872915 + A-rich Low_complexity Low_complexity 5 84 0 2 742 724 162 34 7 chr6 20644342 20644491 -128872546 + Lx2B LINE L1 6841 6993 -7 2 742 387 330 26 18 chr6 20645380 20645494 -128871543 + B3 SINE B2 1 115 -101 2 742 198 0 0 0 chr6 20645495 20645517 -128871520 + (TAAAA)n Simple_repeat Simple_repeat 5 26 0 2 742 440 325 94 76 chr6 20646181 20646628 -128870409 - L1M4c LINE L1 -4523 1861 1407 2 742 318 182 0 0 chr6 20646700 20646766 -128870271 + (CAT)n Simple_repeat Simple_repeat 2 67 0 2 742 2764 39 2 191 chr6 20647445 20647926 -128869111 - RLTR10 LTR ERVK 0 390 1 2 742 17389 19 5 0 chr6 20647928 20649900 -128867137 - RLTR10-int LTR ERVK -3 1984 3 2 742 2736 36 2 195 chr6 20649902 20650385 -128866652 - RLTR10 LTR ERVK 0 390 1 2 742 17389 19 5 0 chr6 20650387 20652359 -128864678 - RLTR10-int LTR ERVK -3 1984 3 2 742 2736 36 2 195 chr6 20652361 20652844 -128864193 - RLTR10 LTR ERVK 0 390 1 2 742 372 265 0 0 chr6 20652846 20652929 -128864108 - B3A SINE B2 -115 83 1 2 742 805 167 14 7 chr6 20653670 20653815 -128863222 - B1_Mus1 SINE Alu 0 148 3 2 742 324 336 9 18 chr6 20654842 20654951 -128862086 + B3A SINE B2 2 109 -89 2 742 516 105 0 0 chr6 20655000 20655076 -128861961 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 742 267 103 0 0 chr6 20655873 20655912 -128861125 + (TTG)n Simple_repeat Simple_repeat 2 40 0 2 742 695 324 33 7 chr6 20656565 20656839 -128860198 + Lx8 LINE L1 6349 6629 -844 2 742 436 253 66 118 chr6 20656891 20656945 -128860092 - MT2A LTR ERVL -34 567 528 2 742 387 0 0 0 chr6 20656945 20656988 -128860049 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 742 559 253 75 114 chr6 20656988 20657152 -128859885 - MT2A LTR ERVL -74 527 215 2 742 654 13 0 0 chr6 20657152 20657227 -128859810 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 2 742 559 259 244 28 chr6 20657227 20657400 -128859637 - MT2A LTR ERVL -319 214 1 2 742 870 319 85 11 chr6 20657437 20657894 -128859143 + Lx8 LINE L1 6750 7240 -233 2 742 28 0 0 0 chr6 20658518 20658546 -128858491 + AT_rich Low_complexity Low_complexity 1 28 0 2 742 470 149 0 0 chr6 20658663 20658750 -128858287 - Lx LINE L1 0 6654 6568 2 742 22 0 0 0 chr6 20659814 20659836 -128857201 + AT_rich Low_complexity Low_complexity 1 22 0 2 742 367 310 130 39 chr6 20660366 20660574 -128856463 - Lx8 LINE L1 -254 7219 6993 2 742 241 183 326 21 chr6 20660618 20660668 -128856369 + Lx4A LINE L1 3678 3757 -2120 2 742 180 0 0 0 chr6 20660668 20660688 -128856349 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 742 241 183 326 21 chr6 20660688 20660732 -128856305 + Lx4A LINE L1 3758 3801 -2076 2 742 37862 19 4 55 chr6 20660732 20666138 -128850899 + L1Md_A LINE L1 207 5586 -297 2 742 8661 18 2 0 chr6 20666138 20667132 -128849905 + L1Md_A LINE L1 5587 6582 0 2 742 2390 51 0 0 chr6 20667132 20667424 -128849613 + L1Md_F2 LINE L1 5294 5585 -298 2 742 7347 60 33 7 chr6 20667425 20668396 -128848641 + L1Md_F2 LINE L1 5587 6582 0 2 742 1511 186 23 0 chr6 20668410 20668716 -128848321 + Lx4A LINE L1 3786 4098 -1779 2 742 13541 126 42 9 chr6 20668747 20671952 -128845085 - L1_Mus2 LINE L1 0 6566 3251 2 742 8556 158 63 22 chr6 20671951 20672039 -128844998 + Lx4A LINE L1 4095 4186 -1691 2 742 306 0 0 0 chr6 20672039 20672073 -128844964 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 742 8556 164 62 21 chr6 20672073 20674021 -128843016 + Lx4A LINE L1 4187 6248 -810 2 742 2623 107 23 0 chr6 20674021 20674412 -128842625 - MTB LTR MaLR 0 400 1 2 742 4054 195 58 13 chr6 20674412 20674623 -128842414 + Lx4A LINE L1 6249 6454 -604 2 742 330 311 26 57 chr6 20675198 20675392 -128841645 + RLTR6-int LTR ERV1 2830 2933 -4845 2 742 641 88 29 29 chr6 20675395 20675500 -128841537 + B1_Mm SINE Alu 43 147 0 2 742 659 339 62 42 chr6 20675553 20676145 -128840892 + RLTR6-int LTR ERV1 2950 3553 -4225 2 742 554 312 74 28 chr6 20676213 20676544 -128840493 + MuRRS4-int LTR ERV1 3677 3947 -1116 2 742 458 233 56 102 chr6 20677484 20677680 -128839357 + RLTR23 LTR ERV1 244 430 0 2 742 253 222 56 0 chr6 20677764 20677854 -128839183 + Lx9 LINE L1 7549 7643 -1 2 742 7228 136 17 39 chr6 20678327 20678877 -128838160 - Lx3A LINE L1 -9 6972 6426 2 742 2634 79 40 64 chr6 20678877 20679298 -128837739 - RLTR10A LTR ERVK 0 411 1 2 742 7228 136 17 39 chr6 20679298 20680008 -128837029 - Lx3A LINE L1 -556 6425 5739 2 742 575 68 0 0 chr6 20680077 20680165 -128836872 - L1_Mus3 LINE L1 -2 6636 6549 2 742 223 26 0 71 chr6 20680167 20680209 -128836828 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 742 5709 105 19 26 chr6 20680212 20681119 -128835918 - L1_Mur1 LINE L1 -1249 4637 3738 2 742 24620 22 0 0 chr6 20681117 20684684 -128832353 - L1Md_T LINE L1 -1 6581 3013 2 742 491 60 0 0 chr6 20684681 20684748 -128832289 - L1_Mur1 LINE L1 -2133 3753 3687 2 742 304 391 43 60 chr6 20685309 20685608 -128831429 + RMER15 LTR ERVL 282 575 0 2 742 5277 176 25 18 chr6 20685813 20687240 -128829797 - Lx3C LINE L1 -3 6973 5482 2 742 410 243 62 38 chr6 20687242 20687274 -128829763 - B4 SINE B4 -91 201 139 2 742 565 104 0 0 chr6 20687274 20687351 -128829686 - B1_Mus2 SINE Alu -70 77 1 2 742 410 243 62 38 chr6 20687351 20687401 -128829636 - B4 SINE B4 -91 138 34 2 742 5711 159 12 25 chr6 20687401 20688426 -128828611 - L1_Mur1 LINE L1 -3541 2345 1333 2 742 210 37 0 0 chr6 20688426 20688453 -128828584 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 742 5711 203 58 8 chr6 20688453 20689171 -128827866 - L1_Mur1 LINE L1 -4554 1332 569 2 742 450 179 0 0 chr6 20689201 20689296 -128827741 + L1_Mur1 LINE L1 850 944 -6038 2 742 344 203 0 0 chr6 20689413 20689477 -128827560 - L1_Mur1 LINE L1 -6225 759 696 2 742 1053 295 11 8 chr6 20689714 20689980 -128827057 + MTD LTR MaLR 96 362 -57 2 742 418 328 72 100 chr6 20690126 20690475 -128826562 - MTEa LTR MaLR -40 339 1 2 742 757 227 82 5 chr6 20690521 20690554 -128826483 - B3 SINE B2 0 216 179 2 742 324 0 0 0 chr6 20690554 20690590 -128826447 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 742 757 227 82 5 chr6 20690590 20690751 -128826286 - B3 SINE B2 -38 178 8 2 742 1829 303 112 22 chr6 20691998 20692633 -128824404 + Lx6 LINE L1 6714 7405 -55 2 742 1933 244 25 50 chr6 20692649 20693128 -128823909 + MTC-int LTR MaLR 292 758 -500 2 742 1564 214 59 39 chr6 20693139 20693577 -128823460 + RMER3D-int LTR ERVK 2391 2837 -5 2 742 1425 164 171 16 chr6 20693583 20693898 -128823139 + RLTR17 LTR ERVK 3 366 -326 2 742 279 0 0 0 chr6 20693898 20693929 -128823108 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 742 2154 186 22 53 chr6 20693929 20694214 -128822823 + MTC-int LTR MaLR 780 1055 -203 2 742 6696 117 91 10 chr6 20694214 20695351 -128821686 - Lx2 LINE L1 -5 6992 5764 2 742 2154 186 22 53 chr6 20695351 20695559 -128821478 + MTC-int LTR MaLR 1056 1258 0 2 742 1502 230 65 48 chr6 20695563 20695845 -128821192 + MTC LTR MaLR 5 301 -120 2 742 2529 171 107 8 chr6 20695845 20696358 -128820679 + RLTR12A LTR ERVK 1 564 -4 2 742 1502 230 65 48 chr6 20696358 20696427 -128820610 + MTC LTR MaLR 302 362 -59 2 742 1913 192 123 127 chr6 20696496 20697189 -128819848 + RMER6C LTR ERVK 1 690 0 2 742 1179 337 136 15 chr6 20697681 20698407 -128818630 + Lx8 LINE L1 6655 7468 -5 2 742 34 99 0 0 chr6 20698553 20698664 -128818373 + AT_rich Low_complexity Low_complexity 1 111 0 2 742 363 389 81 19 chr6 20699516 20699838 -128817199 - LTR16A LTR ERVL -59 392 51 2 742 4045 86 2 0 chr6 20700839 20701384 -128815653 - L1Md_F2 LINE L1 -733 5150 4605 2 742 3411 46 0 0 chr6 20701382 20701795 -128815242 + L1Md_F2 LINE L1 5174 5586 -297 2 742 7888 58 1 2 chr6 20701795 20702792 -128814245 + L1Md_F2 LINE L1 5587 6582 0 2 742 243 314 48 16 chr6 20703061 20703187 -128813850 - L1MEc LINE L1 -6207 193 64 2 742 486 0 0 0 chr6 20703254 20703308 -128813729 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 742 584 138 0 44 chr6 20703619 20703733 -128813304 + Lx LINE L1 6538 6646 -8 2 742 762 294 39 14 chr6 20703751 20704113 -128812924 - L1MB1 LINE L1 -18 6171 5801 2 742 643 297 16 11 chr6 20704351 20704538 -128812499 - B3A SINE B2 -10 188 1 2 742 23 33 0 0 chr6 20704549 20704579 -128812458 + AT_rich Low_complexity Low_complexity 1 30 0 2 742 375 312 63 17 chr6 20704644 20705031 -128812006 - L1MB1 LINE L1 -736 5555 5147 2 742 219 61 19 58 chr6 20705069 20705121 -128811916 + (CAAAAA)n Simple_repeat Simple_repeat 3 52 0 2 742 1167 294 21 44 chr6 20705153 20705541 -128811496 - MTE2a LTR MaLR 0 379 1 2 742 387 0 0 0 chr6 20705606 20705649 -128811388 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2 742 760 293 85 24 chr6 20705689 20705983 -128811054 + Lx6 LINE L1 6967 7278 -182 2 742 21 0 0 0 chr6 20705983 20706004 -128811033 + AT_rich Low_complexity Low_complexity 1 21 0 2 742 26 0 0 0 chr6 20706669 20706695 -128810342 + AT_rich Low_complexity Low_complexity 1 26 0 2 742 28 48 0 0 chr6 20708026 20708068 -128808969 + AT_rich Low_complexity Low_complexity 1 42 0 2 742 224 383 0 0 chr6 20708543 20708624 -128808413 - PB1D10 SINE Alu -5 112 32 2 742 180 176 0 0 chr6 20709188 20709222 -128807815 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 743 753 199 0 0 chr6 20710345 20710655 -128806382 + (CA)n Simple_repeat Simple_repeat 1 310 0 2 743 26 30 0 0 chr6 20710971 20711004 -128806033 + AT_rich Low_complexity Low_complexity 1 33 0 2 743 200 111 28 0 chr6 20711201 20711237 -128805800 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 2 743 4009 46 2 10 chr6 20712860 20713361 -128803676 - L1Md_F3 LINE L1 -14 6570 6074 2 743 564 298 108 78 chr6 20713590 20713961 -128803076 - MLT1B LTR MaLR -8 382 1 2 743 522 0 0 0 chr6 20714863 20714921 -128802116 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 743 689 226 37 19 chr6 20714928 20715090 -128801947 - ORR1D1 LTR MaLR -209 165 1 2 743 750 237 111 25 chr6 20715827 20716026 -128801011 + B3 SINE B2 1 216 0 2 743 8312 106 24 6 chr6 20716043 20716717 -128800320 - Lx3A LINE L1 -1021 5960 5286 2 743 307 0 23 23 chr6 20716717 20716761 -128800276 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2 743 8312 104 26 7 chr6 20716761 20717430 -128799607 - Lx3A LINE L1 -601 5285 4597 2 743 6429 129 14 6 chr6 20717471 20718490 -128798547 + Lx3A LINE L1 5955 6981 0 2 743 180 200 0 0 chr6 20718512 20718552 -128798485 + (TGG)n Simple_repeat Simple_repeat 1 40 0 2 743 351 0 0 0 chr6 20719011 20719050 -128797987 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 743 297 170 29 96 chr6 20719052 20719156 -128797881 + Lx9 LINE L1 7541 7637 -7 3 743 274 359 33 6 chr6 20720711 20720893 -128796144 + LTR33A LTR ERVL 325 511 -9 3 743 253 307 33 22 chr6 20721188 20721278 -128795759 - PB1D10 SINE Alu -14 103 13 3 743 208 257 28 14 chr6 20721579 20721650 -128795387 + GA-rich Low_complexity Low_complexity 1 72 0 3 743 443 87 14 0 chr6 20721863 20721932 -128795105 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 743 201 286 0 16 chr6 20722767 20722831 -128794206 + L2a LINE L2 3362 3424 -2 3 743 21 0 0 0 chr6 20723514 20723535 -128793502 + AT_rich Low_complexity Low_complexity 1 21 0 3 743 672 290 154 38 chr6 20723959 20724697 -128792340 + L1MC1 LINE L1 4528 5351 -795 3 743 283 261 91 16 chr6 20724770 20724891 -128792146 + L1MC1 LINE L1 5426 5555 -789 3 743 1108 290 95 12 chr6 20724920 20725405 -128791632 + L1MC1 LINE L1 5701 6225 -108 3 743 30 27 0 0 chr6 20726333 20726370 -128790667 + AT_rich Low_complexity Low_complexity 1 37 0 3 743 24 0 0 0 chr6 20726411 20726435 -128790602 + AT_rich Low_complexity Low_complexity 1 24 0 3 743 1214 201 97 17 chr6 20726548 20726837 -128790200 + Lx7 LINE L1 7383 7694 -2 3 743 26 0 0 0 chr6 20726944 20726970 -128790067 + AT_rich Low_complexity Low_complexity 1 26 0 3 743 230 306 76 81 chr6 20727029 20727234 -128789803 - Tigger13a DNA MER2_type -436 335 132 3 743 244 279 16 0 chr6 20727234 20727295 -128789742 - BLACKJACK DNA AcHobo -1 2943 2882 3 743 760 309 75 45 chr6 20729630 20730057 -128786980 + MLT1C LTR MaLR 28 467 0 3 743 1278 167 28 27 chr6 20731392 20731669 -128785368 - ORR1A4 LTR MaLR -9 358 84 3 743 7193 35 11 3 chr6 20732048 20732928 -128784109 - L1Md_F3 LINE L1 -2 6582 5696 3 743 326 80 0 20 chr6 20733028 20733079 -128783958 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 3 743 4201 146 38 3 chr6 20733088 20733796 -128783241 - Lx3A LINE L1 -8 6973 6241 3 743 3496 107 26 7 chr6 20733796 20734544 -128782493 + Lx3A LINE L1 5428 6176 -805 3 743 549 205 0 0 chr6 20734885 20735012 -128782025 + GA-rich Low_complexity Low_complexity 2 128 0 3 743 15995 81 0 5 chr6 20735288 20738141 -128778896 - L1Md_F2 LINE L1 -12 6570 3731 3 743 5003 95 5 7 chr6 20738135 20739004 -128778033 - L1Md_F2 LINE L1 -4446 1437 564 3 743 5133 63 0 0 chr6 20739195 20739844 -128777193 + L1Md_F2 LINE L1 5934 6582 0 3 743 2460 117 3 3 chr6 20739865 20740235 -128776802 + L1_Mus2 LINE L1 6197 6566 0 3 743 436 313 82 29 chr6 20740282 20740489 -128776548 + B4 SINE B4 70 287 -5 3 743 339 96 0 0 chr6 20740503 20740555 -128776482 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 743 216 167 0 0 chr6 20740706 20740754 -128776283 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 743 7536 109 2 0 chr6 20741050 20742429 -128774608 - L1_Mus4 LINE L1 -3 6633 5252 3 743 1253 177 4 0 chr6 20742442 20742668 -128774369 + L1_Mur2 LINE L1 4943 5169 -708 3 743 249 33 0 0 chr6 20742758 20742788 -128774249 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 743 35291 36 0 0 chr6 20743427 20748849 -128768188 + L1Md_T LINE L1 71 5589 -297 3 743 8901 6 1 1 chr6 20748849 20749845 -128767192 + L1Md_T LINE L1 5590 6585 0 3 743 39 38 0 0 chr6 20749977 20750030 -128767007 + AT_rich Low_complexity Low_complexity 1 53 0 3 743 342 120 0 0 chr6 20750683 20750733 -128766304 + RMER6D LTR ERVK 2 51 -669 3 743 424 323 68 139 chr6 20750780 20751219 -128765818 - MLT2B4 LTR ERVL -135 421 14 3 743 206 340 62 56 chr6 20751972 20752134 -128764903 - MIR SINE MIR -10 252 90 3 743 437 50 17 0 chr6 20753202 20753262 -128763775 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 743 23 0 0 0 chr6 20754279 20754302 -128762735 + AT_rich Low_complexity Low_complexity 1 23 0 3 743 26 0 0 0 chr6 20755130 20755156 -128761881 + AT_rich Low_complexity Low_complexity 1 26 0 3 743 243 299 37 15 chr6 20755946 20756082 -128760955 - L1M5 LINE L1 -278 5895 5757 3 743 2625 265 66 80 chr6 20756323 20756489 -128760548 - Lx6 LINE L1 -654 6806 6682 3 743 3430 23 2 0 chr6 20756489 20756884 -128760153 - MTA_Mm LTR MaLR 0 396 1 3 743 9173 33 2 1 chr6 20756884 20757981 -128759056 - MTA_Mm-int LTR MaLR 0 1098 1 3 743 3419 23 2 0 chr6 20757981 20758376 -128758661 - MTA_Mm LTR MaLR 0 396 1 3 743 2625 265 66 80 chr6 20758376 20758859 -128758178 - Lx6 LINE L1 -779 6681 6167 3 743 201 39 0 0 chr6 20758859 20758885 -128758152 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 743 972 81 0 0 chr6 20758885 20759032 -128758005 + (GA)n Simple_repeat Simple_repeat 1 148 0 3 743 2625 265 66 80 chr6 20759032 20759476 -128757561 - Lx6 LINE L1 -1294 6166 5729 3 743 520 202 40 0 chr6 20759629 20759728 -128757309 + MTC LTR MaLR 28 130 -291 3 743 759 100 0 0 chr6 20759734 20759844 -128757193 + (TTC)n Simple_repeat Simple_repeat 1 110 0 3 743 623 103 0 10 chr6 20759844 20759942 -128757095 + (TTTC)n Simple_repeat Simple_repeat 1 97 0 3 743 3216 166 63 29 chr6 20759942 20760562 -128756475 - Lx4B LINE L1 0 7058 6418 3 743 1599 211 7 3 chr6 20760612 20760916 -128756121 + MTC LTR MaLR 117 421 0 3 743 26 88 0 0 chr6 20762154 20762222 -128754815 + AT_rich Low_complexity Low_complexity 1 68 0 3 743 200 200 0 24 chr6 20762778 20762819 -128754218 + CT-rich Low_complexity Low_complexity 5 44 0 3 743 185 0 40 0 chr6 20763275 20763300 -128753737 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 743 1150 69 0 0 chr6 20764679 20764824 -128752213 + B1_Mus2 SINE Alu 1 145 -2 3 743 222 0 79 0 chr6 20764824 20764862 -128752175 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 743 21 0 0 0 chr6 20765001 20765022 -128752015 + AT_rich Low_complexity Low_complexity 1 21 0 3 743 6639 192 62 14 chr6 20765658 20766007 -128751030 + L1_Mur2 LINE L1 902 1272 -4614 3 743 378 0 0 0 chr6 20766007 20766049 -128750988 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 743 6870 220 55 26 chr6 20766049 20766753 -128750284 + L1_Mur2 LINE L1 1273 2052 -3834 3 743 380 20 20 0 chr6 20766753 20766802 -128750235 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 743 6870 198 34 30 chr6 20766802 20767265 -128749772 + L1_Mur2 LINE L1 2046 2497 -3380 3 743 2594 123 34 0 chr6 20767265 20767672 -128749365 - BGLII LTR ERVK 0 421 1 3 743 6870 198 34 30 chr6 20767672 20768213 -128748824 + L1_Mur2 LINE L1 2498 3059 -2818 3 743 483 18 0 0 chr6 20768213 20768269 -128748768 + (GGA)n Simple_repeat Simple_repeat 3 58 0 3 743 6870 198 34 30 chr6 20768269 20768346 -128748691 + L1_Mur2 LINE L1 3060 3139 -2738 3 743 243 61 0 0 chr6 20768346 20768379 -128748658 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 743 6870 198 34 30 chr6 20768379 20768653 -128748384 + L1_Mur2 LINE L1 3140 3415 -2462 3 743 7817 55 6 4 chr6 20768654 20769637 -128747400 - L1Md_F2 LINE L1 -11 6571 5587 3 743 6856 167 19 42 chr6 20769647 20770086 -128746951 + L1_Mur2 LINE L1 3422 3843 -2034 3 743 2846 42 82 0 chr6 20770086 20770466 -128746571 + IAPLTR2a LTR ERVK 1 411 0 3 743 6856 167 19 42 chr6 20770466 20771473 -128745564 + L1_Mur2 LINE L1 3844 4835 -1042 3 743 1243 260 45 16 chr6 20771485 20771798 -128745239 + Lx5 LINE L1 6145 6466 -584 3 743 331 286 88 12 chr6 20771799 20771969 -128745068 + Lx5 LINE L1 6867 7049 -1 3 743 777 292 32 5 chr6 20772023 20772209 -128744828 - B3 SINE B2 -23 193 3 3 743 1390 327 79 22 chr6 20773116 20773836 -128743201 - Lx8 LINE L1 -2 7471 6711 3 743 270 81 0 0 chr6 20773841 20773878 -128743159 + (TTG)n Simple_repeat Simple_repeat 2 38 0 3 743 2952 68 5 5 chr6 20773885 20774281 -128742756 + MTA_Mm LTR MaLR 1 396 0 3 743 628 49 0 0 chr6 20774281 20774363 -128742674 + MTA_Mm-int LTR MaLR 1 82 -1016 3 743 662 111 10 0 chr6 20774355 20774454 -128742583 + MTB_Mm LTR MaLR 308 407 0 3 743 1084 320 33 19 chr6 20774474 20774897 -128742140 - Lx8 LINE L1 -764 6709 6281 3 743 936 329 44 44 chr6 20775080 20775446 -128741591 + MTEb LTR MaLR 9 374 -5 3 743 1845 327 87 27 chr6 20775452 20776278 -128740759 + MTEb-int LTR MaLR 2 877 -703 3 743 22183 92 1 8 chr6 20776278 20780794 -128736243 - L1Md_F LINE L1 -1191 4692 211 3 743 552 315 44 65 chr6 20780806 20781081 -128735956 + MTEb-int LTR MaLR 1287 1555 -25 3 743 438 330 90 58 chr6 20781085 20781362 -128735675 + B4A SINE B4 6 291 -1 3 743 946 312 38 54 chr6 20781471 20781840 -128735197 + MTEb LTR MaLR 17 379 0 3 743 238 244 22 15 chr6 20781862 20781999 -128735038 + (TA)n Simple_repeat Simple_repeat 2 139 0 3 743 448 335 25 13 chr6 20782139 20782296 -128734741 + RSINE1 SINE B4 1 159 -6 3 743 381 70 0 0 chr6 20782805 20782862 -128734175 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 743 1089 176 76 0 chr6 20782895 20783105 -128733932 + URR1A DNA MER1_type 1 226 0 3 743 203 239 0 0 chr6 20783800 20783846 -128733191 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 743 583 297 138 31 chr6 20784234 20784488 -128732549 + MTE2b LTR MaLR 95 375 -4 3 743 373 388 59 0 chr6 20784877 20785029 -128732008 + RSINE1 SINE B4 3 163 -2 3 743 4068 143 68 56 chr6 20785680 20786480 -128730557 + RMER17D2 LTR ERVK 1 809 0 3 743 834 108 0 0 chr6 20787423 20787543 -128729494 + RMER17D2 LTR ERVK 56 175 -634 3 743 694 151 24 54 chr6 20787637 20787805 -128729232 + Lx2B LINE L1 6838 7000 0 3 743 206 192 52 13 chr6 20788086 20788239 -128728798 + (TA)n Simple_repeat Simple_repeat 1 159 0 3 743 264 167 0 0 chr6 20788344 20788392 -128728645 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 743 23 33 0 0 chr6 20788685 20788715 -128728322 + AT_rich Low_complexity Low_complexity 1 30 0 3 743 23 54 0 0 chr6 20789670 20789707 -128727330 + AT_rich Low_complexity Low_complexity 1 37 0 3 743 207 209 47 0 chr6 20790539 20790582 -128726455 - L2 LINE L2 -1077 2342 2298 3 743 423 0 0 0 chr6 20791261 20791308 -128725729 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 3 743 432 227 303 12 chr6 20792054 20792219 -128724818 + B3 SINE B2 4 216 0 3 743 303 224 159 0 chr6 20792515 20792622 -128724415 - L1ME2z LINE L1 -552 5892 5769 3 743 23 0 0 0 chr6 20794214 20794237 -128722800 + AT_rich Low_complexity Low_complexity 1 23 0 3 743 1132 234 18 45 chr6 20794278 20794610 -128722427 + Lx9 LINE L1 7297 7619 -25 3 743 1579 93 36 0 chr6 20795621 20795846 -128721191 - L1_Mus2 LINE L1 0 6566 6334 3 743 729 301 87 34 chr6 20796019 20796549 -128720488 - L1MA6 LINE L1 -369 5931 5374 3 743 1698 238 101 22 chr6 20796543 20797050 -128719987 - Lx2B LINE L1 -1 6999 6453 3 743 347 294 24 8 chr6 20797044 20797171 -128719866 - Lx4B LINE L1 -826 6232 6104 3 743 29 47 0 0 chr6 20797224 20797267 -128719770 + AT_rich Low_complexity Low_complexity 1 43 0 3 743 1596 174 6 47 chr6 20797457 20797800 -128719237 - ORR1A4 LTR MaLR 0 329 1 3 743 762 209 22 44 chr6 20798953 20799133 -128717904 + B2_Mm2 SINE B2 2 177 -18 3 743 192 146 73 0 chr6 20799554 20799609 -128717428 + CT-rich Low_complexity Low_complexity 5 63 0 3 743 23 33 0 0 chr6 20799687 20799717 -128717320 + AT_rich Low_complexity Low_complexity 1 30 0 3 743 390 21 0 0 chr6 20800267 20800314 -128716723 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 743 479 96 36 0 chr6 20800718 20800801 -128716236 - Lx3A LINE L1 -832 6149 6064 4 743 4454 124 12 1 chr6 20800807 20801484 -128715553 + Lx3_Mus LINE L1 6171 6854 -155 4 743 3988 56 2 0 chr6 20801483 20801987 -128715050 - L1Md_F3 LINE L1 -637 5246 4742 4 743 2832 57 3 0 chr6 20801984 20802338 -128714699 + L1Md_F3 LINE L1 5232 5586 -297 4 743 8092 46 0 7 chr6 20802338 20803343 -128713694 + L1Md_F3 LINE L1 5587 6584 0 4 743 622 188 41 24 chr6 20803372 20803541 -128713496 + Lx3_Mus LINE L1 6838 7009 0 4 743 49 32 0 0 chr6 20804293 20804356 -128712681 + AT_rich Low_complexity Low_complexity 1 63 0 4 743 414 85 0 0 chr6 20804358 20804417 -128712620 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 743 371 98 0 16 chr6 20806864 20806926 -128710111 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 743 182 150 25 0 chr6 20806978 20807018 -128710019 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 4 743 344 335 156 11 chr6 20807161 20807532 -128709505 - Lx7 LINE L1 -417 7279 6855 4 743 787 157 59 254 chr6 20807532 20807788 -128709249 + ORR1B2 LTR MaLR 39 255 -123 4 743 276 149 0 0 chr6 20807819 20807866 -128709171 + (A)n Simple_repeat Simple_repeat 1 47 0 4 743 2144 305 51 20 chr6 20807866 20808726 -128708311 - Lx7 LINE L1 -850 6846 5960 4 743 324 70 0 0 chr6 20808821 20808864 -128708173 + (ATG)n Simple_repeat Simple_repeat 3 45 0 4 743 359 324 38 63 chr6 20809016 20809174 -128707863 + RSINE1 SINE B4 6 159 -6 4 743 373 291 0 11 chr6 20809279 20809366 -128707671 - B4A SINE B4 -58 234 149 4 743 26699 124 59 7 chr6 20809622 20815653 -128701384 - L1_Mus1 LINE L1 -2 6565 196 4 743 264 149 0 0 chr6 20816567 20816614 -128700423 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 743 557 315 62 96 chr6 20816615 20816875 -128700162 - B4A SINE B4 0 292 42 4 743 621 212 0 0 chr6 20816881 20816994 -128700043 - Lx4B LINE L1 -689 6369 6257 4 743 2655 205 81 37 chr6 20816996 20817650 -128699387 + Lx4B LINE L1 6372 7054 -4 4 743 3200 326 30 29 chr6 20817961 20819004 -128698033 - Lx7 LINE L1 -361 7335 6292 4 743 255 31 0 0 chr6 20819004 20819036 -128698001 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 743 977 98 0 0 chr6 20819036 20819169 -128697868 - B1_Mus1 SINE Alu -13 135 3 4 743 3200 326 30 29 chr6 20819169 20819433 -128697604 - Lx7 LINE L1 -1405 6291 6027 4 743 189 0 0 0 chr6 20819481 20819502 -128697535 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 743 575 160 0 12 chr6 20819505 20819676 -128697361 + (CAGAGA)n Simple_repeat Simple_repeat 2 170 0 4 743 254 117 100 0 chr6 20819683 20819743 -128697294 + (CAGA)n Simple_repeat Simple_repeat 3 68 0 4 743 405 0 0 0 chr6 20819745 20819790 -128697247 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 743 2298 208 41 11 chr6 20819839 20820809 -128696228 - L1_Mur3 LINE L1 -1311 4569 3943 4 743 3232 282 57 1 chr6 20820798 20820855 -128696182 - L1_Mur3 LINE L1 -6561 1167 1111 4 743 438 53 0 0 chr6 20820855 20820912 -128696125 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 743 3232 282 57 1 chr6 20820912 20821894 -128695143 - L1_Mur3 LINE L1 -6618 1110 71 4 743 2574 194 28 28 chr6 20821895 20822426 -128694611 + RMER12 LTR ERVK 1 531 -791 4 743 665 199 30 79 chr6 20822438 20822602 -128694435 + RMER12 LTR ERVK 988 1143 -179 4 743 315 0 0 0 chr6 20822876 20822911 -128694126 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 743 948 65 0 0 chr6 20822913 20823037 -128694000 + (GA)n Simple_repeat Simple_repeat 2 125 0 4 743 1061 103 6 0 chr6 20823054 20823229 -128693808 + (GGGAGA)n Simple_repeat Simple_repeat 2 177 0 4 743 455 319 0 1 chr6 20823863 20824045 -128692992 - L1M5 LINE L1 -2682 3464 3284 4 743 38 39 0 0 chr6 20824214 20824266 -128692771 + AT_rich Low_complexity Low_complexity 1 52 0 4 743 180 0 0 0 chr6 20824267 20824287 -128692750 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 743 716 263 67 0 chr6 20824351 20824560 -128692477 - L1_Mur3 LINE L1 -7458 270 48 4 743 3007 261 73 74 chr6 20824571 20826043 -128690994 - L1_Mur3 LINE L1 -1511 4369 2900 4 743 685 284 44 58 chr6 20826072 20826367 -128690670 + RMER13A LTR ERVK 3 293 -567 4 743 3982 262 29 37 chr6 20826651 20827975 -128689062 - RMER1A Other Other -15 1015 2 4 743 2637 245 72 18 chr6 20828116 20828989 -128688048 - L1_Mur3 LINE L1 -3027 2853 1934 4 743 30 0 0 0 chr6 20828992 20829022 -128688015 + AT_rich Low_complexity Low_complexity 1 30 0 4 743 650 225 21 43 chr6 20829034 20829061 -128687976 - L1_Mur3 LINE L1 -4274 1609 1583 4 743 2762 68 8 3 chr6 20829061 20829430 -128687607 - L1_Mus1 LINE L1 0 6567 6197 4 743 650 285 116 50 chr6 20829430 20830127 -128686910 - L1_Mur3 LINE L1 -4295 1585 841 4 743 23 68 0 0 chr6 20831187 20831231 -128685806 + AT_rich Low_complexity Low_complexity 1 44 0 4 743 26 0 0 0 chr6 20831271 20831297 -128685740 + AT_rich Low_complexity Low_complexity 1 26 0 4 743 273 314 42 17 chr6 20831773 20831893 -128685144 + ORR1E LTR MaLR 1 123 -236 4 743 242 79 0 19 chr6 20832704 20832761 -128684276 - L1_Mus1 LINE L1 0 6567 6518 4 743 772 42 0 0 chr6 20832763 20832858 -128684179 + L1_Mus1 LINE L1 6386 6480 -158 4 743 485 73 44 0 chr6 20833124 20833192 -128683845 - Lx3_Mus LINE L1 -357 5529 5459 4 743 9631 89 34 12 chr6 20833189 20834638 -128682399 + Lx3_Mus LINE L1 5536 7009 0 4 743 22 0 0 0 chr6 20834744 20834766 -128682271 + AT_rich Low_complexity Low_complexity 1 22 0 4 743 216 0 0 0 chr6 20835031 20835055 -128681982 + (A)n Simple_repeat Simple_repeat 1 24 0 4 743 1785 231 60 21 chr6 20835258 20835691 -128681346 - Lx5 LINE L1 0 7050 6601 4 743 1318 192 12 4 chr6 20835688 20835934 -128681103 + L1_Mur2 LINE L1 5347 5594 -283 4 743 417 68 0 0 chr6 20836131 20836190 -128680847 + L1Md_F3 LINE L1 6512 6570 -14 4 743 2421 43 7 0 chr6 20836833 20837136 -128679901 - L1Md_F3 LINE L1 0 6584 6280 4 743 572 294 144 5 chr6 20838004 20838226 -128678811 + ORR1D2 LTR MaLR 105 357 -13 4 743 441 0 0 0 chr6 20838633 20838682 -128678355 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 743 1632 48 0 9 chr6 20838875 20839085 -128677952 - MTB LTR MaLR 0 400 193 4 743 2440 56 25 9 chr6 20839077 20839114 -128677923 - MT2C_Mm LTR ERVL -145 330 287 4 743 1349 51 0 11 chr6 20839114 20839293 -128677744 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 4 743 618 82 0 0 chr6 20839293 20839377 -128677660 + (GGGA)n Simple_repeat Simple_repeat 1 85 0 4 743 2440 56 25 9 chr6 20839377 20839663 -128677374 - MT2C_Mm LTR ERVL -189 286 2 4 744 27 0 0 0 chr6 20840716 20840743 -128676294 + AT_rich Low_complexity Low_complexity 1 27 0 4 744 2016 229 56 7 chr6 20840759 20841204 -128675833 - Lx6 LINE L1 -246 7214 6748 4 744 200 85 16 78 chr6 20841217 20841281 -128675756 + T-rich Low_complexity Low_complexity 1 60 0 4 744 453 204 0 0 chr6 20841281 20841369 -128675668 - Lx6 LINE L1 -710 6750 6663 4 744 559 252 0 0 chr6 20841371 20841502 -128675535 + Lx6 LINE L1 7320 7450 -10 4 744 267 289 16 109 chr6 20841503 20841631 -128675406 + RMER30 DNA MER1_type 86 201 -1 4 744 36 40 0 0 chr6 20841683 20841733 -128675304 + AT_rich Low_complexity Low_complexity 1 50 0 4 744 1759 149 105 0 chr6 20842339 20842634 -128674403 + ORR1A3 LTR MaLR 1 326 0 4 744 2596 99 10 10 chr6 20842635 20843023 -128674014 + L1_Mus3 LINE L1 6251 6638 0 4 744 344 85 0 0 chr6 20843029 20843076 -128673961 + ORR1A3 LTR MaLR 272 318 -8 4 744 375 121 0 0 chr6 20843702 20843760 -128673277 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 744 375 205 106 9 chr6 20843836 20843877 -128673160 - MT2A LTR ERVL -4 529 489 4 744 414 0 0 0 chr6 20843877 20843923 -128673114 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 744 375 217 94 21 chr6 20843923 20844010 -128673027 - MT2A LTR ERVL -43 558 406 4 744 1877 121 3 35 chr6 20844010 20844328 -128672709 + L1_Mus3 LINE L1 6331 6638 0 4 744 649 309 57 0 chr6 20844684 20844894 -128672143 - ID_B1 SINE B4 -1 223 2 4 744 572 101 0 22 chr6 20844917 20845008 -128672029 + B1_Mus2 SINE Alu 59 147 0 4 744 324 0 0 0 chr6 20845682 20845718 -128671319 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 744 22 35 0 0 chr6 20845949 20845978 -128671059 + AT_rich Low_complexity Low_complexity 1 29 0 4 744 23 101 0 0 chr6 20846074 20846153 -128670884 + AT_rich Low_complexity Low_complexity 1 79 0 4 744 487 284 49 14 chr6 20846230 20846373 -128670664 + B3A SINE B2 1 148 -50 4 744 195 162 0 0 chr6 20846425 20846462 -128670575 + GA-rich Low_complexity Low_complexity 2 38 0 4 744 251 50 0 48 chr6 20846861 20846903 -128670134 + (TATAA)n Simple_repeat Simple_repeat 2 41 0 4 744 1214 311 101 17 chr6 20847038 20847666 -128669371 + Lx8 LINE L1 6745 7335 -138 4 744 267 103 0 0 chr6 20847669 20847708 -128669329 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 744 9588 16 1 0 chr6 20847749 20849136 -128667901 - L1Md_A LINE L1 -402 6180 4793 4 744 3311 37 2 0 chr6 20849136 20849537 -128667500 + L1Md_T LINE L1 6181 6582 0 4 744 8863 158 20 18 chr6 20849606 20851456 -128665581 - Lx2 LINE L1 -11 6986 5127 4 744 812 20 20 0 chr6 20851456 20851557 -128665480 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 4 744 850 149 82 12 chr6 20851557 20851727 -128665310 - B2_Mm2 SINE B2 -12 183 2 4 744 8863 181 18 13 chr6 20851727 20852785 -128664252 - Lx2 LINE L1 -751 5126 4062 4 744 25 65 0 0 chr6 20852962 20853008 -128664029 + AT_rich Low_complexity Low_complexity 1 46 0 4 744 3650 63 2 2 chr6 20853114 20853574 -128663463 - L1_Mus1 LINE L1 -2 6565 6106 4 744 385 392 45 40 chr6 20853899 20854146 -128662891 + B4A SINE B4 43 290 -2 4 744 216 0 0 0 chr6 20854171 20854195 -128662842 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 744 207 0 0 0 chr6 20854195 20854217 -128662820 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 744 231 146 0 0 chr6 20854218 20854273 -128662764 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 4 744 436 274 34 14 chr6 20854375 20854523 -128662514 + MLT1F-int LTR MaLR 91 241 -1248 4 744 23 33 0 0 chr6 20854685 20854715 -128662322 + AT_rich Low_complexity Low_complexity 1 30 0 4 744 540 214 63 21 chr6 20854809 20854952 -128662085 - B1F SINE Alu 0 149 1 4 744 331 251 101 23 chr6 20855255 20855387 -128661650 + B3 SINE B2 80 216 0 4 744 756 144 36 0 chr6 20855427 20855566 -128661471 + Lx LINE L1 6506 6649 -5 4 744 390 42 0 0 chr6 20855677 20855725 -128661312 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 744 1472 80 0 0 chr6 20857082 20857282 -128659755 - L1_Mus2 LINE L1 0 6566 6367 4 744 9309 71 0 1 chr6 20857648 20858851 -128658186 + L1Md_F2 LINE L1 4385 5586 -297 4 744 7977 51 2 0 chr6 20858851 20859833 -128657204 + L1Md_F2 LINE L1 5587 6570 -12 4 744 23 33 0 0 chr6 20859864 20859894 -128657143 + AT_rich Low_complexity Low_complexity 1 30 0 4 744 336 194 23 0 chr6 20860739 20860868 -128656169 + CT-rich Low_complexity Low_complexity 2 133 0 4 744 427 219 8 132 chr6 20861464 20861585 -128655452 + MT2B LTR ERVL 190 295 -306 4 744 1251 194 29 64 chr6 20861622 20861936 -128655101 + RMER6C LTR ERVK 382 684 -6 5 744 269 327 26 34 chr6 20862618 20862632 -128654405 + B1_Mus1 SINE Alu 1 13 -135 5 744 3942 44 4 0 chr6 20862632 20863112 -128653925 - LTRIS_Mm LTR ERV1 0 482 1 5 744 351 308 61 15 chr6 20863112 20863244 -128653793 + B1F2 SINE Alu 12 149 0 5 744 33 43 0 0 chr6 20863297 20863344 -128653693 + AT_rich Low_complexity Low_complexity 1 47 0 5 744 22 35 0 0 chr6 20863541 20863570 -128653467 + AT_rich Low_complexity Low_complexity 1 29 0 5 744 555 115 0 0 chr6 20863598 20863680 -128653357 + (GGGAA)n Simple_repeat Simple_repeat 4 85 0 5 744 405 0 0 0 chr6 20863680 20863725 -128653312 + (GAAA)n Simple_repeat Simple_repeat 1 45 0 5 744 552 30 0 0 chr6 20863827 20863893 -128653144 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 744 351 0 0 0 chr6 20863893 20863931 -128653106 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 744 6879 109 5 25 chr6 20864105 20865848 -128651189 - L1_Mus2 LINE L1 0 6566 4862 5 744 6070 111 8 2 chr6 20865847 20867003 -128650034 + L1Md_F2 LINE L1 4951 6110 -457 5 744 33064 61 7 3 chr6 20866979 20871566 -128645471 + L1Md_F2 LINE L1 983 5585 -298 5 744 7898 52 5 0 chr6 20871567 20872558 -128644479 + L1Md_F2 LINE L1 5587 6582 0 5 744 658 38 0 0 chr6 20872562 20872641 -128644396 + L1Md_F3 LINE L1 5447 5525 -358 5 744 3467 25 0 0 chr6 20872641 20873037 -128644000 + MTA_Mm LTR MaLR 1 396 0 5 744 9584 17 0 0 chr6 20873037 20874135 -128642902 + MTA_Mm-int LTR MaLR 1 1098 0 5 744 3271 15 2 17 chr6 20874135 20874501 -128642536 + MTA_Mm LTR MaLR 1 367 -29 5 744 2451 85 85 26 chr6 20874501 20874889 -128642148 - IAPLTR2a LTR ERVK 0 411 1 5 744 3271 15 2 17 chr6 20874889 20874924 -128642113 + MTA_Mm LTR MaLR 368 396 0 5 744 552 61 0 0 chr6 20874924 20874990 -128642047 + L1Md_F3 LINE L1 5521 5586 -297 5 744 7984 45 5 2 chr6 20874990 20875982 -128641055 + L1Md_F3 LINE L1 5587 6581 -3 5 744 2934 156 11 9 chr6 20875988 20876679 -128640358 + Lx2A LINE L1 5283 5981 -1027 5 744 3269 119 5 63 chr6 20876711 20877285 -128639752 + Lx2A LINE L1 6468 7008 0 5 744 26 50 0 0 chr6 20877911 20877951 -128639086 + AT_rich Low_complexity Low_complexity 1 40 0 5 744 24 0 0 0 chr6 20878315 20878339 -128638698 + AT_rich Low_complexity Low_complexity 1 24 0 5 744 224 220 0 20 chr6 20878583 20878634 -128638403 + (CATA)n Simple_repeat Simple_repeat 2 51 0 5 744 225 0 0 0 chr6 20878784 20878809 -128638228 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 744 814 318 48 0 chr6 20878810 20879121 -128637916 - Lx8 LINE L1 -267 7206 6881 5 744 258 217 0 0 chr6 20881384 20881453 -128635584 + CT-rich Low_complexity Low_complexity 2 70 0 5 744 441 306 8 16 chr6 20881484 20881610 -128635427 - B1F SINE Alu -6 143 19 5 744 6559 122 17 19 chr6 20882121 20883187 -128633850 + Lx3B LINE L1 5910 6973 0 5 744 269 221 38 38 chr6 20883338 20883418 -128633619 - MTC LTR MaLR -341 80 1 5 744 28588 129 25 6 chr6 20883781 20887697 -128629340 + L1_Mus2 LINE L1 564 4525 -1358 5 744 759 32 0 0 chr6 20887697 20887791 -128629246 + (GAAA)n Simple_repeat Simple_repeat 4 97 0 5 744 28588 105 15 4 chr6 20887791 20889772 -128627265 + L1_Mus2 LINE L1 4526 6566 0 5 744 1880 138 3 16 chr6 20889772 20890088 -128626949 - Lx3_Mus LINE L1 -8 7001 6690 5 744 5073 273 70 67 chr6 20890089 20892777 -128624260 + L1_Mur3 LINE L1 1411 4106 -1771 5 744 1546 204 0 4 chr6 20892780 20893056 -128623981 - MTC LTR MaLR 0 421 147 5 744 1869 283 23 12 chr6 20893109 20893712 -128623325 + Lx6 LINE L1 6455 7460 0 5 744 551 232 9 0 chr6 20893768 20893880 -128623157 - MTC LTR MaLR -308 113 1 5 744 6204 201 104 14 chr6 20893882 20894398 -128622639 + L1_Mur3 LINE L1 4108 4679 -1201 5 744 468 0 0 0 chr6 20894398 20894450 -128622587 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 5 744 6204 201 104 14 chr6 20894450 20895560 -128621477 + L1_Mur3 LINE L1 4680 5879 -1 5 744 21 0 0 0 chr6 20895972 20895993 -128621044 + AT_rich Low_complexity Low_complexity 1 21 0 5 744 268 234 81 81 chr6 20896426 20896575 -128620462 + MIR SINE MIR 101 249 -13 5 744 771 83 0 0 chr6 20896927 20897035 -128620002 + (CA)n Simple_repeat Simple_repeat 2 109 0 5 744 21 36 0 0 chr6 20897476 20897504 -128619533 + AT_rich Low_complexity Low_complexity 1 28 0 5 744 297 0 0 0 chr6 20897640 20897673 -128619364 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 744 25 65 0 0 chr6 20898178 20898224 -128618813 + AT_rich Low_complexity Low_complexity 1 46 0 5 744 31 0 0 0 chr6 20898331 20898362 -128618675 + AT_rich Low_complexity Low_complexity 1 31 0 5 744 481 282 21 7 chr6 20899001 20899144 -128617893 - L1MC3 LINE L1 -311 7474 7330 5 744 294 53 53 0 chr6 20899275 20899332 -128617705 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 5 744 1092 217 23 5 chr6 20899439 20899657 -128617380 + Lx5 LINE L1 6677 6898 -152 5 744 1491 166 146 6 chr6 20899658 20899973 -128617064 - RMER6C LTR ERVK -331 359 1 5 744 1847 160 149 43 chr6 20899973 20900515 -128616522 - RMER6-int LTR ERVK 0 3177 2579 5 744 332 213 0 0 chr6 20900515 20900576 -128616461 - LSU-rRNA_Hsa rRNA rRNA -3198 1837 1777 5 744 281 128 0 0 chr6 20900577 20900624 -128616413 - RMER6-int LTR ERVK -661 2516 2470 5 744 6896 155 40 22 chr6 20900622 20901900 -128615137 - RMER6-int LTR ERVK -1435 1742 442 5 744 1085 63 9 29 chr6 20901900 20902246 -128614791 + (TTC)n Simple_repeat Simple_repeat 1 339 0 5 744 363 137 0 0 chr6 20902284 20902357 -128614680 + (GTTTG)n Simple_repeat Simple_repeat 1 73 0 5 744 1951 167 45 13 chr6 20902687 20903069 -128613968 - RMER6-int LTR ERVK -2783 394 1 5 744 2242 202 152 12 chr6 20903069 20903674 -128613363 - RMER6C LTR ERVK 0 690 1 5 744 432 308 6 65 chr6 20903675 20903845 -128613192 + Lx5 LINE L1 6886 7045 -5 5 744 22 0 0 0 chr6 20904042 20904064 -128612973 + AT_rich Low_complexity Low_complexity 1 22 0 5 744 205 240 27 0 chr6 20904227 20904302 -128612735 + T-rich Low_complexity Low_complexity 2 78 0 5 744 1222 51 3 53 chr6 20904320 20904694 -128612343 + (TTTCC)n Simple_repeat Simple_repeat 1 355 0 5 744 511 288 144 32 chr6 20904850 20905162 -128611875 - Lx9 LINE L1 -290 7354 7008 5 744 180 0 0 0 chr6 20905168 20905188 -128611849 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 744 22 0 0 0 chr6 20905499 20905521 -128611516 + AT_rich Low_complexity Low_complexity 1 22 0 5 744 1070 59 7 25 chr6 20906615 20906892 -128610145 + (TTC)n Simple_repeat Simple_repeat 1 271 0 5 744 1068 102 243 4 chr6 20906892 20907118 -128609919 + RLTR44E LTR ERVK 173 452 0 5 744 22 0 0 0 chr6 20908866 20908888 -128608149 + AT_rich Low_complexity Low_complexity 1 22 0 5 744 287 243 118 101 chr6 20909033 20909202 -128607835 + Lx8 LINE L1 7295 7466 -7 5 744 23 0 0 0 chr6 20909204 20909227 -128607810 + AT_rich Low_complexity Low_complexity 1 23 0 5 744 413 275 0 6 chr6 20909313 20909492 -128607545 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 744 317 331 59 13 chr6 20909580 20909733 -128607304 + L1MD3 LINE L1 6922 7081 -914 5 744 1146 55 7 0 chr6 20909736 20909881 -128607156 + B1_Mus1 SINE Alu 2 147 -1 5 744 670 296 202 37 chr6 20909943 20910348 -128606689 + Lx8 LINE L1 6995 7466 -7 5 744 24 0 0 0 chr6 20910350 20910374 -128606663 + AT_rich Low_complexity Low_complexity 1 24 0 5 744 754 207 50 39 chr6 20910509 20910690 -128606347 - B3A SINE B2 -15 183 1 5 744 391 319 76 67 chr6 20910715 20911060 -128605977 + L1ME1 LINE L1 4693 5045 -1101 5 744 3625 173 53 18 chr6 20911361 20912091 -128604946 + RMER6A LTR ERVK 1 756 0 5 744 745 282 14 23 chr6 20912394 20912612 -128604425 + B3 SINE B2 1 216 0 5 744 313 314 73 49 chr6 20912663 20912827 -128604210 + L1MD1 LINE L1 5689 5856 -386 5 744 213 204 0 0 chr6 20913529 20913553 -128603484 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 744 405 0 0 0 chr6 20913553 20913598 -128603439 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 744 213 204 0 0 chr6 20913598 20913627 -128603410 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 744 299 187 163 89 chr6 20913739 20913874 -128603163 + B1_Mur2 SINE Alu 3 147 -2 5 744 331 373 72 67 chr6 20913886 20914501 -128602536 + L1ME1 LINE L1 5328 5945 -234 5 744 196 213 0 32 chr6 20914521 20914584 -128602453 + GA-rich Low_complexity Low_complexity 3 63 0 5 744 351 286 252 22 chr6 20915406 20915628 -128601409 + B4 SINE B4 2 274 -18 5 744 1136 278 36 23 chr6 20915860 20916250 -128600787 + Lx8 LINE L1 6840 7234 -239 5 744 188 0 0 69 chr6 20916284 20916313 -128600724 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 5 744 341 332 39 32 chr6 20916350 20916630 -128600407 - RLTR15 LTR ERVK -31 328 47 5 744 283 302 35 0 chr6 20916708 20916794 -128600243 + Lx8 LINE L1 7242 7330 -143 5 744 31 92 0 0 chr6 20916905 20916992 -128600045 + AT_rich Low_complexity Low_complexity 1 87 0 5 744 279 0 0 0 chr6 20917070 20917101 -128599936 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 5 744 1441 192 66 35 chr6 20917156 20917551 -128599486 - RMER17C LTR ERVK -3 407 1 5 744 320 333 13 54 chr6 20918173 20918322 -128598715 - Lx8 LINE L1 -142 7331 7189 5 744 333 167 0 0 chr6 20918644 20918722 -128598315 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 744 1035 81 0 0 chr6 20919245 20919405 -128597632 + (GA)n Simple_repeat Simple_repeat 1 160 0 5 744 183 100 0 0 chr6 20919787 20919817 -128597220 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 744 22 0 0 0 chr6 20921588 20921610 -128595427 + AT_rich Low_complexity Low_complexity 1 22 0 5 744 970 248 83 35 chr6 20922626 20922995 -128594042 + MER67C LTR ERV1 1 387 -324 5 744 876 61 0 0 chr6 20923099 20923214 -128593823 + (TG)n Simple_repeat Simple_repeat 2 116 0 5 744 507 216 39 16 chr6 20925235 20925362 -128591675 - MTC LTR MaLR -286 135 6 5 744 681 246 7 0 chr6 20925380 20925522 -128591515 - B1_Mur2 SINE Alu -6 143 1 5 744 214 283 29 39 chr6 20925540 20925643 -128591394 + (TATATG)n Simple_repeat Simple_repeat 6 107 0 5 744 535 309 6 18 chr6 20927286 20927451 -128589586 + RSINE1 SINE B4 3 165 0 5 744 974 270 67 3 chr6 20929305 20929621 -128587416 + L1_Mur3 LINE L1 52 387 -7341 5 744 1407 176 134 20 chr6 20929603 20929779 -128587258 + L1_Mur3 LINE L1 2057 2233 -3647 5 744 1901 171 14 81 chr6 20929779 20930200 -128586837 - RLTR9C LTR ERVK 0 393 1 5 744 1407 176 134 20 chr6 20930200 20930417 -128586620 + L1_Mur3 LINE L1 2234 2494 -3386 5 744 3727 210 70 71 chr6 20930417 20930605 -128586432 + L1_Mur3 LINE L1 2779 2992 -2888 5 744 348 24 0 0 chr6 20930605 20930646 -128586391 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 5 744 3727 210 70 71 chr6 20930646 20930961 -128586076 + L1_Mur3 LINE L1 2993 3342 -2538 5 744 1493 120 14 66 chr6 20930961 20931247 -128585790 + L1_Mus3 LINE L1 6361 6631 -7 5 744 3727 210 70 71 chr6 20931247 20932016 -128585021 + L1_Mur3 LINE L1 3343 4050 -1830 5 744 1124 69 7 0 chr6 20932038 20932183 -128584854 - B1_Mus2 SINE Alu 0 147 2 5 744 246 132 0 0 chr6 20932183 20932221 -128584816 + L1_Mur3 LINE L1 4560 4597 -1283 5 744 285 77 0 0 chr6 20933564 20933603 -128583434 - L1_Mur1 LINE L1 -3275 2611 2573 5 744 4143 115 5 10 chr6 20933607 20934393 -128582644 + L1_Mus4 LINE L1 5242 6024 -612 5 744 1340 146 10 0 chr6 20934404 20934609 -128582428 - Lx LINE L1 -415 6239 6033 5 744 1247 123 73 41 chr6 20934605 20934850 -128582187 + L1_Mus4 LINE L1 6401 6653 -1 5 744 3451 94 49 2 chr6 20934927 20935436 -128581601 - L1_Mus3 LINE L1 -371 6267 5735 5 744 2299 114 8 19 chr6 20935436 20935803 -128581234 + L1_Mus3 LINE L1 6268 6630 -8 5 744 2390 334 51 18 chr6 20936200 20937204 -128579833 - Lx8 LINE L1 -189 7284 6248 5 744 318 252 142 7 chr6 20937285 20937452 -128579585 - L1MA5A LINE L1 -361 5936 5744 6 744 303 276 13 13 chr6 20937751 20937828 -128579209 + ID_B1 SINE B4 82 158 -66 6 744 247 243 162 19 chr6 20937828 20937856 -128579181 + PB1D9 SINE Alu 1 120 0 6 744 3385 223 143 14 chr6 20937967 20938873 -128578164 - RMER1B Other Other 0 1066 44 6 744 22 35 0 0 chr6 20940515 20940544 -128576493 + AT_rich Low_complexity Low_complexity 1 29 0 6 744 391 335 30 43 chr6 20940652 20940973 -128576064 + ORR1E LTR MaLR 4 312 -58 6 744 396 335 71 92 chr6 20940975 20941258 -128575779 + B4 SINE B4 2 278 -14 6 744 420 20 0 0 chr6 20941301 20941350 -128575687 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 6 744 642 75 0 0 chr6 20941704 20941797 -128575240 + (TC)n Simple_repeat Simple_repeat 2 94 0 6 744 4023 89 0 0 chr6 20941837 20942376 -128574661 - L1_Mus1 LINE L1 -314 6252 5714 6 744 2542 60 24 0 chr6 20942376 20942707 -128574330 + L1_Mus1 LINE L1 6229 6567 0 6 744 204 40 0 0 chr6 20942716 20942741 -128574296 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 6 744 718 310 43 0 chr6 20943136 20943320 -128573717 + B3 SINE B2 1 192 -24 6 744 1297 315 41 65 chr6 20943488 20944586 -128572451 + L1M2 LINE L1 3716 4787 -1356 6 744 944 194 113 10 chr6 20944695 20944898 -128572139 + URR1B DNA MER1_type 1 224 -1 6 744 542 285 79 30 chr6 20945200 20945504 -128571533 + L1M2 LINE L1 5448 5766 -531 6 744 1666 55 0 0 chr6 20945502 20945703 -128571334 - L1Md_F2 LINE L1 -381 6201 6001 6 744 820 42 0 8 chr6 20945703 20945823 -128571214 + L1Md_A LINE L1 6464 6582 0 6 744 335 69 35 0 chr6 20945934 20945992 -128571045 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 6 744 334 372 35 6 chr6 20946447 20946620 -128570417 - HAL1 LINE L1 -873 1634 1457 6 744 265 340 106 7 chr6 20946695 20946837 -128570200 - LTR53 LTR ERVL -86 433 278 6 744 233 373 40 0 chr6 20947454 20947580 -128569457 - ORR1E LTR MaLR -228 131 1 6 744 426 319 78 82 chr6 20947631 20947901 -128569136 + MTE2b LTR MaLR 1 269 -110 6 744 468 0 0 0 chr6 20949208 20949260 -128567777 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 744 3291 264 88 45 chr6 20949297 20950348 -128566689 - Lx6 LINE L1 -101 7359 6264 6 744 5230 205 19 23 chr6 20950353 20951861 -128565176 + Lx6 LINE L1 4729 6234 -1226 6 744 3666 183 43 12 chr6 20951890 20952631 -128564406 - Lx4B LINE L1 -325 6733 5970 6 744 8500 57 7 2 chr6 20952897 20954708 -128562329 - L1Md_F3 LINE L1 -14 6570 4748 6 744 405 39 0 0 chr6 20955004 20955055 -128561982 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 6 744 24 0 0 0 chr6 20955133 20955157 -128561880 + AT_rich Low_complexity Low_complexity 1 24 0 6 744 611 348 14 7 chr6 20956238 20956527 -128560510 + B4A SINE B4 2 292 0 6 744 615 177 8 13 chr6 20956537 20956775 -128560262 + (CA)n Simple_repeat Simple_repeat 1 236 0 6 744 359 369 0 29 chr6 20957098 20957302 -128559735 + L1_Mur3 LINE L1 86 283 -7445 6 744 554 239 42 5 chr6 20957330 20957523 -128559514 + L1_Mur3 LINE L1 864 1063 -6665 6 744 2916 236 23 109 chr6 20957512 20958563 -128558474 + L1_Mur3 LINE L1 1603 2562 -3315 6 744 2271 261 122 17 chr6 20958625 20959370 -128557667 + RMER1C Other Other 53 1205 -137 6 744 316 79 0 60 chr6 20960113 20960180 -128556857 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 6 744 21 71 0 0 chr6 20960747 20960789 -128556248 + AT_rich Low_complexity Low_complexity 1 42 0 6 744 2660 89 12 55 chr6 20961443 20961861 -128555176 + MTB LTR MaLR 1 400 0 6 744 35353 35 0 0 chr6 20964229 20969652 -128547385 + L1Md_T LINE L1 71 5589 -297 6 744 8984 5 0 0 chr6 20969652 20970688 -128546349 + L1Md_T LINE L1 5590 6585 0 6 745 5520 237 89 57 chr6 20972261 20973676 -128543361 - Lx7 LINE L1 0 7696 6215 6 745 2908 77 13 3 chr6 20973676 20974066 -128542971 - MTA_Mm LTR MaLR -2 394 1 6 745 5520 237 89 57 chr6 20974066 20974392 -128542645 - Lx7 LINE L1 -1482 6214 5899 6 745 462 315 80 22 chr6 20974772 20975187 -128541850 + L1MD LINE L1 4638 5076 -1070 6 745 8479 77 1 10 chr6 20975179 20977289 -128539748 - L1Md_Gf LINE L1 -3999 1887 1 6 745 337 302 93 12 chr6 20977514 20977675 -128539362 - RLTR15 LTR ERVK -165 194 21 6 745 387 0 0 0 chr6 20977683 20977726 -128539311 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 745 744 368 18 11 chr6 20977900 20978180 -128538857 + B4 SINE B4 9 290 -2 6 745 378 0 0 0 chr6 20978224 20978266 -128538771 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 745 4322 220 108 23 chr6 20978433 20979547 -128537490 + Lx7 LINE L1 6489 7696 0 6 745 22 35 0 0 chr6 20979793 20979822 -128537215 + AT_rich Low_complexity Low_complexity 1 29 0 6 745 1214 265 21 21 chr6 20979829 20980168 -128536869 - Lx6 LINE L1 -28 7432 7094 6 745 1260 216 54 71 chr6 20980175 20980543 -128536494 - Lx6 LINE L1 -1371 6089 5728 6 745 1319 204 14 18 chr6 20980544 20980819 -128536218 + Lx6 LINE L1 5486 5759 -118 6 745 245 336 57 57 chr6 20981616 20981774 -128535263 - MLT1J1 LTR MaLR -104 340 183 6 745 934 330 96 2 chr6 20983198 20983635 -128533402 + Lx8 LINE L1 6376 6853 -620 6 745 22 0 0 0 chr6 20983960 20983982 -128533055 + AT_rich Low_complexity Low_complexity 1 22 0 6 745 201 313 148 57 chr6 20984087 20984209 -128532828 + MIRb SINE MIR 121 253 -15 6 745 8313 127 24 19 chr6 20984620 20984631 -128532406 - Lx3A LINE L1 -4 6977 6968 6 745 438 53 0 0 chr6 20984631 20984688 -128532349 + (TTTG)n Simple_repeat Simple_repeat 3 59 0 6 745 21565 108 15 14 chr6 20984688 20989057 -128527980 - Lx3A LINE L1 -14 6967 2590 6 745 2927 191 142 30 chr6 20989054 20989812 -128527225 - Lx3A LINE L1 -6139 845 3 6 745 271 297 0 13 chr6 20990075 20990150 -128526887 - Lx6 LINE L1 -1194 6266 6193 6 745 1206 250 47 19 chr6 20990176 20990498 -128526539 - Lx6 LINE L1 -1341 6119 5789 6 745 944 193 22 11 chr6 20990502 20990685 -128526352 + Lx6 LINE L1 5603 5787 -1263 6 745 1283 12 0 46 chr6 20991054 20991228 -128525809 + L1Md_F2 LINE L1 6404 6569 -13 6 745 2455 275 100 25 chr6 20991433 20992310 -128524727 + Lx6 LINE L1 6268 7434 -26 6 745 25 31 0 0 chr6 20992674 20992706 -128524331 + AT_rich Low_complexity Low_complexity 1 32 0 6 745 603 124 62 0 chr6 20992950 20993063 -128523974 + Lx LINE L1 6529 6648 -6 6 745 23 0 0 0 chr6 20993230 20993253 -128523784 + AT_rich Low_complexity Low_complexity 1 23 0 6 745 243 0 0 0 chr6 20994248 20994275 -128522762 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 745 412 176 0 0 chr6 20994277 20994351 -128522686 - Lx9 LINE L1 -189 7455 7382 6 745 312 233 22 0 chr6 20994351 20994441 -128522596 + Lx9 LINE L1 7250 7341 -303 6 745 741 79 0 0 chr6 20994476 20994577 -128522460 + (TTTTC)n Simple_repeat Simple_repeat 5 105 0 6 745 4923 65 3 12 chr6 20994580 20995230 -128521807 - L1Md_F2 LINE L1 0 6582 5939 6 745 2579 59 0 0 chr6 20995230 20995552 -128521485 + L1Md_F2 LINE L1 5640 5961 -621 6 745 221 346 85 19 chr6 20996370 20996476 -128520561 + L2a LINE L2 3312 3424 -2 6 745 34 0 0 0 chr6 20996786 20996820 -128520217 + AT_rich Low_complexity Low_complexity 1 34 0 6 745 21 82 0 0 chr6 20996842 20996891 -128520146 + AT_rich Low_complexity Low_complexity 1 49 0 6 745 190 346 62 51 chr6 20997212 20997407 -128519630 - L2 LINE L2 -595 2824 2628 6 745 351 0 0 0 chr6 20997492 20997531 -128519506 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 745 2007 70 7 4 chr6 20997605 20997878 -128519159 + L1_Mus3 LINE L1 6362 6635 -3 6 745 318 351 71 60 chr6 20998099 20998435 -128518602 - L2 LINE L2 -1450 1969 1630 6 745 36 77 0 0 chr6 20998840 20998918 -128518119 + AT_rich Low_complexity Low_complexity 1 78 0 6 745 3099 235 49 47 chr6 20999080 20999996 -128517041 - Lx7 LINE L1 0 7696 6779 6 745 1551 284 37 2 chr6 21000007 21000413 -128516624 - Lx7 LINE L1 -936 6760 6341 1 745 777 355 26 35 chr6 21000619 21001042 -128515995 + Lx8 LINE L1 6263 6681 -792 2 745 264 360 78 53 chr6 21001065 21001476 -128515561 + Lx8 LINE L1 7047 7467 -6 2 745 207 100 0 0 chr6 21002626 21002656 -128514381 + (T)n Simple_repeat Simple_repeat 1 30 0 3 745 180 97 0 0 chr6 21002737 21002768 -128514269 + (A)n Simple_repeat Simple_repeat 1 31 0 4 745 318 338 139 67 chr6 21003354 21003728 -128513309 + MLT1E2 LTR MaLR 99 499 -128 5 745 445 271 166 22 chr6 21004014 21004195 -128512842 - RMER15 LTR ERVL -96 479 273 6 745 27 29 0 0 chr6 21004546 21004580 -128512457 + AT_rich Low_complexity Low_complexity 1 34 0 7 745 494 149 7 34 chr6 21004647 21004793 -128512244 + (TTTA)n Simple_repeat Simple_repeat 3 144 0 8 745 334 304 76 0 chr6 21004795 21004874 -128512163 - B1_Mur3 SINE Alu -64 85 1 9 745 21 0 0 0 chr6 21004878 21004899 -128512138 + AT_rich Low_complexity Low_complexity 1 21 0 1 745 587 175 0 8 chr6 21004951 21005072 -128511965 - Lx2B LINE L1 -1 6999 6880 1 745 1297 185 15 8 chr6 21005073 21005334 -128511703 + Lx LINE L1 6390 6652 -2 1 745 3722 174 42 6 chr6 21005337 21006068 -128510969 - Lx2B LINE L1 -105 6895 6024 1 745 3491 214 40 44 chr6 21006076 21006403 -128510634 + RMER19B LTR ERVK 55 346 -556 1 745 891 33 8 0 chr6 21006403 21006524 -128510513 + L1Md_T LINE L1 6461 6582 0 1 745 3491 212 39 47 chr6 21006524 21007028 -128510009 + RMER19B LTR ERVK 347 864 -38 1 745 612 307 0 0 chr6 21007265 21007428 -128509609 + RSINE1 SINE B4 3 165 0 1 745 201 121 0 0 chr6 21007435 21007468 -128509569 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 745 396 0 0 0 chr6 21007473 21007525 -128509512 - L1Md_T LINE L1 -2 6580 6529 1 745 24 77 0 0 chr6 21007525 21007577 -128509460 + AT_rich Low_complexity Low_complexity 1 52 0 1 745 354 127 79 0 chr6 21007582 21007645 -128509392 + Lx LINE L1 5600 5667 -987 1 745 482 347 16 27 chr6 21008581 21008839 -128508198 - Tigger5 DNA MER2_type -4 2402 2148 2 745 2752 143 2 9 chr6 21008846 21009291 -128507746 - RMER6-int LTR ERVK -1985 1192 751 2 745 387 53 53 0 chr6 21009286 21009343 -128507694 - RMER6-int LTR ERVK -3110 67 8 2 745 957 186 36 0 chr6 21009350 21009517 -128507520 - RMER6D LTR ERVK 0 720 548 2 745 1893 201 38 137 chr6 21009520 21009890 -128507147 + RMER6C LTR ERVK 1 333 -357 2 745 885 85 22 11 chr6 21009890 21010068 -128506969 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 745 1893 201 38 137 chr6 21010068 21010463 -128506574 + RMER6C LTR ERVK 334 689 -1 2 745 23 0 0 0 chr6 21011272 21011295 -128505742 + AT_rich Low_complexity Low_complexity 1 23 0 2 745 218 295 13 0 chr6 21011297 21011375 -128505662 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 745 198 143 0 0 chr6 21011658 21011693 -128505344 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 2 745 233 375 133 9 chr6 21011838 21011951 -128505086 - RSINE1 SINE B4 -38 127 1 2 745 2486 208 57 21 chr6 21012657 21012957 -128504080 + RMER13B LTR ERVK 202 508 -400 2 745 198 0 0 0 chr6 21012957 21012979 -128504058 + (CAAGC)n Simple_repeat Simple_repeat 5 26 0 2 745 2486 208 57 21 chr6 21012979 21013237 -128503800 + RMER13B LTR ERVK 509 779 -129 2 745 29 0 0 0 chr6 21014040 21014069 -128502968 + AT_rich Low_complexity Low_complexity 1 29 0 3 745 22 0 0 0 chr6 21014206 21014228 -128502809 + AT_rich Low_complexity Low_complexity 1 22 0 3 745 770 335 88 14 chr6 21014266 21014629 -128502408 + MLT1A1 LTR MaLR 18 407 -1 3 745 2548 43 15 3 chr6 21015597 21015922 -128501115 - L1Md_F3 LINE L1 -1 6583 6255 3 745 754 300 20 4 chr6 21016382 21016630 -128500407 - Lx8 LINE L1 -452 7021 6770 3 745 558 298 103 33 chr6 21016778 21017500 -128499537 - L1MC LINE L1 -680 5653 4882 3 745 248 293 50 10 chr6 21017700 21017800 -128499237 - PB1D10 SINE Alu -13 104 1 3 745 554 337 21 5 chr6 21017917 21018111 -128498926 - Lx8 LINE L1 -700 6773 6577 3 745 1512 108 42 4 chr6 21018138 21018379 -128498658 - L1Md_A LINE L1 -1426 4457 4208 3 745 3143 132 68 95 chr6 21018379 21018938 -128498099 + L1Md_A LINE L1 4529 5129 -754 3 745 1094 206 132 36 chr6 21018938 21019241 -128497796 + IAPEY3_LTR LTR ERVK 1 332 0 3 745 3143 132 68 95 chr6 21019241 21019663 -128497374 + L1Md_A LINE L1 5130 5585 -298 3 745 8088 51 0 0 chr6 21019664 21020659 -128496378 + L1Md_A LINE L1 5587 6581 -1 3 745 270 0 0 0 chr6 21020667 21020697 -128496340 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 3 745 658 317 22 22 chr6 21020729 21021006 -128496031 - Lx8 LINE L1 -970 6503 6227 4 745 315 0 0 0 chr6 21021029 21021064 -128495973 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 745 1068 110 0 0 chr6 21021064 21021209 -128495828 - B1_Mus1 SINE Alu -2 146 2 4 745 197 33 33 0 chr6 21023122 21023152 -128493885 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 4 745 1741 175 30 84 chr6 21023953 21024322 -128492715 - ORR1B1 LTR MaLR -4 390 42 4 745 32 57 0 0 chr6 21024531 21024584 -128492453 + AT_rich Low_complexity Low_complexity 1 53 0 4 745 1232 243 39 36 chr6 21025163 21025496 -128491541 + Lx6 LINE L1 7094 7427 -33 4 745 4911 143 8 25 chr6 21025792 21026597 -128490440 - Lx3B LINE L1 -316 6657 5867 4 745 885 98 0 0 chr6 21026597 21026720 -128490317 - ORR1A1 LTR MaLR -83 263 141 4 745 28 0 0 0 chr6 21026802 21026830 -128490207 + AT_rich Low_complexity Low_complexity 1 28 0 4 745 10182 147 118 2 chr6 21027157 21028036 -128489001 + Lx3_Mus LINE L1 206 1520 -4366 5 745 2834 102 19 2 chr6 21028036 21028450 -128488587 + BGLII LTR ERVK 1 421 0 5 745 10182 108 36 6 chr6 21028450 21029726 -128487311 + Lx3_Mus LINE L1 1521 2846 -3040 5 745 9487 97 16 8 chr6 21029718 21032029 -128485008 + Lx3_Mus LINE L1 4677 7004 -5 5 745 240 86 0 0 chr6 21032124 21032159 -128484878 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 5 745 519 348 97 46 chr6 21032534 21033245 -128483792 + L1MC3 LINE L1 6460 7206 -579 5 745 565 197 254 0 chr6 21033966 21034108 -128482929 - Lx3C LINE L1 -2 6974 6797 5 745 848 264 100 19 chr6 21034124 21034678 -128482359 + L1MC LINE L1 5105 5706 -627 5 745 348 274 79 40 chr6 21034681 21034958 -128482079 - L1MC LINE L1 -3130 3016 2729 5 745 29 60 0 0 chr6 21036483 21036533 -128480504 + AT_rich Low_complexity Low_complexity 1 50 0 5 745 28 29 0 0 chr6 21036740 21036775 -128480262 + AT_rich Low_complexity Low_complexity 1 35 0 5 745 6645 159 23 3 chr6 21036844 21038027 -128479010 - Lx2B LINE L1 0 7000 5795 5 745 5140 159 69 1 chr6 21038027 21038966 -128478071 + Lx2B LINE L1 4632 5634 -243 5 745 27 29 0 0 chr6 21038966 21039000 -128478037 + AT_rich Low_complexity Low_complexity 1 34 0 6 745 586 307 108 57 chr6 21039338 21040147 -128476890 - L1MC3 LINE L1 -760 7025 6135 6 745 226 101 72 0 chr6 21040203 21040272 -128476765 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 745 1026 322 44 63 chr6 21040287 21040877 -128476160 + Lx9 LINE L1 6358 6936 -708 6 745 634 314 27 34 chr6 21040984 21041269 -128475768 + MLT1A0 LTR MaLR 106 374 0 6 745 827 355 37 19 chr6 21041504 21041883 -128475154 - Lx8 LINE L1 -166 7307 6922 6 745 1246 112 0 5 chr6 21041886 21042075 -128474962 + B2_Mm2 SINE B2 3 190 -5 6 745 228 78 38 38 chr6 21042105 21042158 -128474879 + (TTATA)n Simple_repeat Simple_repeat 2 54 0 6 745 253 256 8 25 chr6 21042162 21042282 -128474755 + (TA)n Simple_repeat Simple_repeat 2 119 0 6 745 220 268 0 14 chr6 21042238 21042310 -128474727 + CT-rich Low_complexity Low_complexity 2 72 0 6 745 342 0 0 0 chr6 21042359 21042397 -128474640 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 745 256 327 29 10 chr6 21042450 21042552 -128474485 - Lx8 LINE L1 -1152 6321 6218 7 745 185 146 21 0 chr6 21042616 21042664 -128474373 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 7 745 1525 352 20 32 chr6 21042775 21043621 -128473416 - Lx8 LINE L1 -629 6844 5995 6 745 264 315 22 0 chr6 21043976 21044065 -128472972 - MTD LTR MaLR -13 406 316 7 745 426 346 114 27 chr6 21044056 21044276 -128472761 - MLT1A0 LTR MaLR -5 360 122 7 745 22 35 0 0 chr6 21044751 21044780 -128472257 + AT_rich Low_complexity Low_complexity 1 29 0 7 745 618 72 0 12 chr6 21045149 21045233 -128471804 - L1_Mus1 LINE L1 -426 6141 6059 7 745 1908 66 0 0 chr6 21045233 21045476 -128471561 + L1_Mus1 LINE L1 6325 6567 0 7 745 192 40 0 0 chr6 21046993 21047018 -128470019 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 745 504 0 0 0 chr6 21048394 21048450 -128468587 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 7 745 270 0 0 0 chr6 21048709 21048739 -128468298 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 745 198 0 0 0 chr6 21049519 21049541 -128467496 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 8 745 1286 148 135 8 chr6 21049542 21049787 -128467250 - ORR1A4 LTR MaLR -53 276 1 8 745 6945 185 53 82 chr6 21049787 21051565 -128465472 - ORR1A4-int LTR MaLR 0 1963 238 8 745 1440 225 171 44 chr6 21051565 21052067 -128464970 - RMER2 LTR ERV1 -1 566 1 8 745 1282 179 8 0 chr6 21052067 21052301 -128464736 - ORR1A4-int LTR MaLR -1727 236 1 8 745 991 151 84 21 chr6 21052303 21052493 -128464544 - ORR1A4 LTR MaLR -2 327 126 8 745 36 0 0 0 chr6 21052508 21052544 -128464493 + AT_rich Low_complexity Low_complexity 1 36 0 8 745 596 329 99 19 chr6 21052544 21053018 -128464019 - L1M5 LINE L1 -3256 2890 2379 8 745 281 327 7 7 chr6 21053526 21053654 -128463383 - B1_Mur2 SINE Alu -8 141 14 8 745 314 23 23 0 chr6 21054239 21054282 -128462755 + (CAA)n Simple_repeat Simple_repeat 2 45 0 8 745 1664 254 60 73 chr6 21055139 21055650 -128461387 - RMER19C LTR ERVK 0 611 117 8 745 218 32 32 0 chr6 21055650 21055681 -128461356 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 745 1664 254 60 73 chr6 21055681 21055788 -128461249 - RMER19C LTR ERVK -495 116 2 8 745 951 153 41 12 chr6 21056017 21056189 -128460848 + URR1B DNA MER1_type 47 223 -2 8 745 315 396 14 5 chr6 21056208 21056426 -128460611 - Lx8 LINE L1 -217 7256 7037 9 745 1078 78 0 0 chr6 21057382 21057523 -128459514 + B1_Mm SINE Alu 1 141 -6 9 745 278 0 54 0 chr6 21057525 21057562 -128459475 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 745 24 0 0 0 chr6 21057929 21057953 -128459084 + AT_rich Low_complexity Low_complexity 1 24 0 9 745 4535 139 66 5 chr6 21058296 21059064 -128457973 + L1VL1 LINE L1 276 1090 -5332 9 745 6488 89 78 9 chr6 21059066 21060219 -128456818 + L1_Mus3 LINE L1 5400 6630 -8 9 745 22 88 0 0 chr6 21060219 21060276 -128456761 + AT_rich Low_complexity Low_complexity 1 57 0 9 745 357 43 0 0 chr6 21060682 21060729 -128456308 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 745 225 289 0 0 chr6 21060755 21060800 -128456237 - ID4 SINE ID -20 63 19 9 745 440 315 42 32 chr6 21061300 21061490 -128455547 + MLT1G3 LTR MaLR 215 406 -189 9 745 311 380 42 0 chr6 21061649 21061791 -128455246 + LTR33A_ LTR ERVL 26 173 -358 1 745 495 0 0 0 chr6 21061881 21061936 -128455101 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 1 745 236 370 32 52 chr6 21062547 21062701 -128454336 + Lx8 LINE L1 7139 7289 -184 1 745 313 367 18 0 chr6 21062728 21062837 -128454200 - ORR1E LTR MaLR -222 137 27 1 745 401 264 134 41 chr6 21063007 21063201 -128453836 - ORR1D2 LTR MaLR 0 370 159 1 745 468 164 0 0 chr6 21064096 21064206 -128452831 + CT-rich Low_complexity Low_complexity 1 110 0 1 745 575 14 14 0 chr6 21064427 21064499 -128452538 + (TTTTC)n Simple_repeat Simple_repeat 4 76 0 1 745 743 247 64 133 chr6 21064503 21064676 -128452361 - RMER1C Other Other -13 1329 1191 1 745 1071 137 0 0 chr6 21064676 21064851 -128452186 + (GGAGAA)n Simple_repeat Simple_repeat 1 175 0 1 745 743 247 64 133 chr6 21064851 21065037 -128452000 - RMER1C Other Other -152 1190 995 1 745 291 264 31 62 chr6 21066382 21066479 -128450558 + Lx8 LINE L1 7220 7313 -160 1 745 5220 121 7 6 chr6 21066532 21067338 -128449699 + Lx3A LINE L1 6159 6965 -16 1 745 612 101 0 0 chr6 21067340 21067429 -128449608 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 1 745 1719 128 45 3 chr6 21067563 21067852 -128449185 - L1_Mus3 LINE L1 -7 6631 6331 1 745 2731 75 3 24 chr6 21067852 21068232 -128448805 + L1_Mus3 LINE L1 5959 6330 -236 1 745 370 251 158 5 chr6 21068247 21068443 -128448594 + L1MC LINE L1 4699 4924 -1222 1 745 272 341 20 98 chr6 21068457 21068610 -128448427 + ID_B1 SINE B4 78 218 -6 1 745 423 222 91 0 chr6 21068624 21068723 -128448314 + B3 SINE B2 6 113 -103 1 745 307 317 133 35 chr6 21068810 21069024 -128448013 + L1M5 LINE L1 4943 5186 -960 1 745 1109 95 0 0 chr6 21069024 21069171 -128447866 + B1_Mus1 SINE Alu 2 148 0 1 745 307 317 133 35 chr6 21069171 21069211 -128447826 + L1M5 LINE L1 5187 5222 -924 1 745 481 98 32 11 chr6 21069227 21069320 -128447717 + (GAAAA)n Simple_repeat Simple_repeat 5 99 0 1 745 240 348 62 96 chr6 21069575 21069753 -128447284 + MLT1H LTR MaLR 138 309 -240 1 745 659 90 0 0 chr6 21069844 21069933 -128447104 + B2_Mm2 SINE B2 1 89 -106 1 745 3628 115 6 11 chr6 21070091 21070758 -128446279 - Lx LINE L1 -730 5924 5259 1 745 4434 108 8 9 chr6 21070751 21071389 -128445648 + Lx LINE L1 5911 6547 -107 1 745 585 96 13 0 chr6 21071389 21071485 -128445552 - B2_Mm1t SINE B2 -95 103 6 1 745 1128 40 7 0 chr6 21071485 21071662 -128445375 + L1Md_F2 LINE L1 6431 6582 0 1 745 491 121 9 66 chr6 21071664 21071770 -128445267 + Lx LINE L1 6549 6648 -6 1 745 1720 240 119 6 chr6 21072018 21072488 -128444549 + Lx3C LINE L1 6470 6991 -9 1 745 22 80 0 0 chr6 21072887 21072937 -128444100 + AT_rich Low_complexity Low_complexity 1 50 0 1 745 721 246 22 0 chr6 21072947 21073127 -128443910 - Lx3C LINE L1 -91 6909 6702 1 745 1240 308 121 8 chr6 21073692 21074228 -128442809 - Lx8 LINE L1 -215 7258 6662 1 745 33 66 0 0 chr6 21075779 21075840 -128441197 + AT_rich Low_complexity Low_complexity 1 61 0 1 745 462 250 18 18 chr6 21075849 21075959 -128441078 - ID_B1 SINE B4 -1 223 114 1 745 291 367 50 0 chr6 21075959 21075988 -128441049 - B1F1 SINE Alu 0 149 4 1 745 743 147 37 0 chr6 21076496 21076632 -128440405 + URR1A DNA MER1_type 85 225 -1 1 745 962 141 6 0 chr6 21076776 21076946 -128440091 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1 745 1776 176 25 3 chr6 21076990 21077309 -128439728 + RMER6C LTR ERVK 1 326 -364 1 745 657 254 244 16 chr6 21077310 21077625 -128439412 + Lx4B LINE L1 6655 7041 -17 1 745 929 238 36 65 chr6 21077648 21077985 -128439052 + RMER6C LTR ERVK 321 647 -43 1 745 1149 70 25 0 chr6 21078007 21078164 -128438873 - L1_Mus1 LINE L1 -1 6566 6406 1 745 431 70 0 0 chr6 21078164 21078221 -128438816 + U6 snRNA snRNA 11 67 -40 1 745 1039 167 22 11 chr6 21078221 21078403 -128438634 + RMER6D LTR ERVK 536 719 -1 1 745 249 33 0 0 chr6 21078452 21078482 -128438555 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 745 224 185 30 30 chr6 21078483 21078550 -128438487 + T-rich Low_complexity Low_complexity 2 68 0 1 745 500 272 22 7 chr6 21079417 21079554 -128437483 - B1_Mur2 SINE Alu -9 140 2 1 745 1195 67 6 0 chr6 21079913 21080077 -128436960 + L1_Mus1 LINE L1 6399 6563 -4 1 745 21 0 0 0 chr6 21080249 21080270 -128436767 + AT_rich Low_complexity Low_complexity 1 21 0 1 745 1532 180 11 57 chr6 21080825 21081191 -128435846 - Lx5 LINE L1 -917 6133 5785 1 745 1368 57 0 0 chr6 21081206 21081381 -128435656 - L1_Mus1 LINE L1 -1 6566 6392 1 745 242 295 17 59 chr6 21081663 21081782 -128435255 + RMER12 LTR ERVK 718 831 -491 1 745 21 0 0 0 chr6 21082691 21082712 -128434325 + AT_rich Low_complexity Low_complexity 1 21 0 1 745 238 276 0 0 chr6 21083004 21083062 -128433975 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 1 745 5732 258 67 25 chr6 21083064 21084671 -128432366 - Lx6 LINE L1 -174 7286 5613 1 745 26 82 0 0 chr6 21085211 21085272 -128431765 + AT_rich Low_complexity Low_complexity 1 61 0 1 745 7045 105 20 22 chr6 21085773 21086776 -128430261 - Lx LINE L1 0 6654 5652 1 745 3312 36 5 5 chr6 21086776 21087172 -128429865 + MTA_Mm LTR MaLR 1 396 0 1 745 8345 67 6 5 chr6 21087172 21088268 -128428769 + MTA_Mm-int LTR MaLR 1 1098 0 1 745 3334 35 5 0 chr6 21088268 21088662 -128428375 + MTA_Mm LTR MaLR 1 396 0 1 745 7045 159 6 41 chr6 21088662 21089098 -128427939 - Lx LINE L1 -232 5651 5234 1 745 1122 83 0 0 chr6 21089098 21089242 -128427795 - B1_Mus2 SINE Alu -3 144 1 1 745 4725 168 3 44 chr6 21089242 21089487 -128427550 - Lx LINE L1 -650 5233 5002 1 745 384 179 0 0 chr6 21089527 21089605 -128427432 + URR1B DNA MER1_type 73 150 -75 1 745 276 111 0 0 chr6 21090205 21090250 -128426787 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 745 570 244 0 0 chr6 21090250 21090406 -128426631 + (TA)n Simple_repeat Simple_repeat 1 156 0 1 745 468 176 56 47 chr6 21090714 21090821 -128426216 - URR1B DNA MER1_type -45 180 73 1 745 1814 134 16 16 chr6 21091600 21091911 -128425126 - Lx LINE L1 -12 6642 6332 1 745 1026 87 0 0 chr6 21091911 21092049 -128424988 + Lx LINE L1 5778 5915 -739 1 745 4847 131 23 9 chr6 21092049 21092835 -128424202 + Lx3A LINE L1 6185 6981 0 1 745 1142 238 18 0 chr6 21093307 21093588 -128423449 - L1MA8 LINE L1 -5 6286 6001 1 745 1090 45 8 0 chr6 21093765 21093898 -128423139 + B1_Mm SINE Alu 1 134 -13 1 745 585 0 0 0 chr6 21093898 21093963 -128423074 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 1 745 240 257 67 29 chr6 21094109 21094213 -128422824 - Lx9 LINE L1 -5 7639 7532 1 745 432 0 0 0 chr6 21094216 21094264 -128422773 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 745 8138 43 2 0 chr6 21094315 21095294 -128421743 + L1Md_F2 LINE L1 5588 6568 -14 1 745 207 88 0 0 chr6 21095310 21095344 -128421693 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 1 745 1256 113 10 0 chr6 21095878 21096082 -128420955 - Lx LINE L1 0 6654 6449 1 745 195 288 236 41 chr6 21097060 21097183 -128419854 + MIR SINE MIR 38 184 -78 1 745 221 119 24 0 chr6 21097184 21097226 -128419811 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 745 1135 187 131 62 chr6 21097780 21098054 -128418983 + ORR1C2 LTR MaLR 3 295 -89 1 745 599 283 32 16 chr6 21098056 21098246 -128418791 - L1_Mur3 LINE L1 -7173 539 347 1 745 417 39 0 0 chr6 21098669 21098720 -128418317 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 745 420 20 0 0 chr6 21098726 21098775 -128418262 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 745 531 0 0 0 chr6 21099460 21099519 -128417518 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 745 4970 40 5 0 chr6 21099532 21100132 -128416905 - L1Md_F3 LINE L1 -2 6582 5980 1 745 2869 21 0 0 chr6 21100132 21100466 -128416571 + L1Md_F3 LINE L1 5684 6017 -567 1 746 1162 48 0 14 chr6 21102834 21102982 -128414055 + B1_Mm SINE Alu 1 146 -1 1 746 1142 115 55 0 chr6 21103534 21103717 -128413320 - B2_Mm2 SINE B2 -1 194 2 1 746 588 248 27 62 chr6 21104287 21104511 -128412526 - B3 SINE B2 0 216 1 1 746 4566 156 109 7 chr6 21104836 21105680 -128411357 - Lx2 LINE L1 -1 6996 6067 1 746 235 236 14 27 chr6 21105909 21105983 -128411054 + (TAA)n Simple_repeat Simple_repeat 3 75 0 1 746 1383 209 73 34 chr6 21106872 21107300 -128409737 + RMER17C LTR ERVK 1 441 -368 1 746 795 239 122 26 chr6 21107997 21108268 -128408769 - MLT1B LTR MaLR -81 309 13 1 746 4502 162 27 1 chr6 21109609 21110380 -128406657 + L1VL2 LINE L1 77 867 -5468 1 746 3784 160 6 3 chr6 21110449 21111093 -128405944 - L1_Mm LINE L1 -247 5636 4991 1 746 5590 108 1 4 chr6 21111094 21111903 -128405134 + L1_Mus4 LINE L1 5829 6635 -1 1 746 7946 114 16 16 chr6 21111903 21113303 -128403734 + MusHAL1 LINE L1 209 1607 -1105 1 746 1669 97 19 0 chr6 21113302 21113560 -128403477 - MusHAL1 LINE L1 -827 1885 1623 1 746 6459 156 8 9 chr6 21113558 21115294 -128401743 + Lx LINE L1 4919 6652 -2 1 746 41 21 0 0 chr6 21116303 21116351 -128400686 + AT_rich Low_complexity Low_complexity 1 48 0 1 746 198 0 0 0 chr6 21116522 21116544 -128400493 + (TA)n Simple_repeat Simple_repeat 1 22 0 1 746 738 340 133 29 chr6 21116602 21116984 -128400053 + LTR16A LTR ERVL 14 435 -16 1 746 1442 179 4 23 chr6 21117254 21117512 -128399525 + ORR1B1 LTR MaLR 134 386 -8 1 746 518 311 44 44 chr6 21119095 21119367 -128397670 - MLT1B LTR MaLR -118 272 1 1 746 21 71 0 0 chr6 21119508 21119550 -128397487 + AT_rich Low_complexity Low_complexity 1 42 0 1 746 255 103 0 0 chr6 21120455 21120494 -128396543 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 746 1168 74 0 0 chr6 21120497 21120645 -128396392 - B1_Mus1 SINE Alu 0 148 1 1 746 226 281 143 42 chr6 21121340 21121459 -128395578 - MER45B DNA Tip100 -841 199 69 1 746 216 337 0 11 chr6 21121567 21121657 -128395380 + GA-rich Low_complexity Low_complexity 5 93 0 1 746 315 0 0 0 chr6 21121741 21121776 -128395261 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 746 360 0 0 0 chr6 21121777 21121817 -128395220 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 746 441 0 0 0 chr6 21121817 21121865 -128395172 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 746 408 384 42 4 chr6 21121900 21122136 -128394901 + L2a LINE L2 2868 3116 -310 2 746 494 67 13 0 chr6 21122239 21122314 -128394723 + (TC)n Simple_repeat Simple_repeat 2 77 0 2 746 496 0 31 0 chr6 21122748 21122812 -128394225 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 746 1201 343 143 18 chr6 21122870 21123753 -128393284 - Lx9 LINE L1 -227 7417 6425 2 746 676 312 48 26 chr6 21124349 21124579 -128392458 + B4A SINE B4 15 249 -43 2 746 377 309 59 20 chr6 21125241 21125393 -128391644 - RSINE1 SINE B4 -6 159 2 2 746 318 342 60 27 chr6 21125574 21125724 -128391313 + L1M4 LINE L1 3503 3657 -2489 2 746 441 341 17 106 chr6 21125726 21125962 -128391075 + MTEa LTR MaLR 4 218 -161 2 746 366 370 112 61 chr6 21125962 21126235 -128390802 + MLT2B3 LTR ERVL 4 538 -16 2 746 28 48 0 0 chr6 21126280 21126322 -128390715 + AT_rich Low_complexity Low_complexity 1 42 0 2 746 431 353 81 53 chr6 21126381 21126923 -128390114 + L1M4 LINE L1 4539 5095 -1051 2 746 294 295 34 11 chr6 21127435 21127524 -128389513 + MTEb LTR MaLR 287 377 -2 2 746 322 293 53 20 chr6 21127524 21127674 -128389363 + L1M4 LINE L1 5328 5482 -697 2 746 4701 215 35 14 chr6 21129112 21130744 -128386293 - Lx4B LINE L1 -12 6988 5289 2 746 207 0 0 0 chr6 21130744 21130767 -128386270 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 746 3351 200 8 31 chr6 21130767 21130932 -128386105 - Lx4B LINE L1 -589 5288 5126 2 746 5483 65 38 8 chr6 21130933 21131665 -128385372 - L1Md_F2 LINE L1 -4 6578 5825 2 746 473 45 15 0 chr6 21131667 21131734 -128385303 + L1_Mm LINE L1 5248 5315 -568 2 746 3218 182 17 10 chr6 21131736 21132456 -128384581 - Lx4B LINE L1 -1323 4554 3830 2 746 6792 82 10 2 chr6 21132489 21133453 -128383584 - L1_Mus3 LINE L1 -7 6631 5660 2 746 207 0 0 0 chr6 21133454 21133477 -128383560 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 746 1440 177 29 3 chr6 21133481 21133787 -128383250 - Lx4B LINE L1 -2046 3831 3518 2 746 11895 193 48 61 chr6 21133828 21134737 -128382300 + L1VL4 LINE L1 422 1490 -4396 2 746 6954 41 5 6 chr6 21134737 21135591 -128381446 + L1Md_F2 LINE L1 5727 6579 -3 2 746 1222 63 11 6 chr6 21135588 21135763 -128381274 + L1Md_F3 LINE L1 6409 6584 0 2 746 11895 172 64 93 chr6 21135763 21137294 -128379743 + L1VL4 LINE L1 1491 2891 -2995 2 746 675 0 0 0 chr6 21137294 21137369 -128379668 + (GGAAA)n Simple_repeat Simple_repeat 5 79 0 2 746 11895 172 64 93 chr6 21137369 21138922 -128378115 + L1VL4 LINE L1 2892 4485 -1401 2 746 333 278 23 16 chr6 21140129 21140257 -128376780 + MMERVK10C-int LTR ERVK 3082 3210 -4371 2 746 272 254 0 0 chr6 21140413 21140480 -128376557 + MMERVK10C-int LTR ERVK 3472 3538 -3283 2 746 399 358 161 15 chr6 21145307 21145642 -128371395 + MLT1G1 LTR MaLR 3 386 -193 2 746 21 82 0 0 chr6 21145962 21146011 -128371026 + AT_rich Low_complexity Low_complexity 1 49 0 2 746 1033 108 6 6 chr6 21146133 21146301 -128370736 + (TTCC)n Simple_repeat Simple_repeat 2 169 0 2 746 248 269 0 41 chr6 21146306 21146403 -128370634 + CT-rich Low_complexity Low_complexity 4 96 0 2 746 604 304 29 10 chr6 21146413 21146622 -128370415 - ID_B1 SINE B4 -11 213 1 2 746 22 35 0 0 chr6 21146622 21146651 -128370386 + AT_rich Low_complexity Low_complexity 1 29 0 2 746 22 35 0 0 chr6 21147142 21147171 -128369866 + AT_rich Low_complexity Low_complexity 1 29 0 2 746 2857 113 79 2 chr6 21148443 21148886 -128368151 - RLTR44C LTR ERVK -25 477 1 2 746 4955 59 3 0 chr6 21148886 21149528 -128367509 - RLTR44-int LTR ERVK 0 2812 2169 2 746 4592 176 73 73 chr6 21149527 21150992 -128366045 - RLTR44-int LTR ERVK -1347 1465 1 2 746 2834 113 79 2 chr6 21151004 21151447 -128365590 - RLTR44C LTR ERVK -25 477 1 2 746 315 0 0 0 chr6 21151569 21151604 -128365433 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 746 273 269 223 69 chr6 21151674 21151862 -128365175 - MER68 LTR ERVL -328 235 19 2 746 426 39 0 0 chr6 21151913 21151965 -128365072 + (CTG)n Simple_repeat Simple_repeat 2 53 0 2 746 295 179 0 0 chr6 21152079 21152135 -128364902 - Lx3C LINE L1 -462 6514 6459 2 746 1682 193 126 31 chr6 21152131 21152530 -128364507 + Lx2B LINE L1 6509 6953 -47 2 746 1986 149 15 6 chr6 21152530 21152854 -128364183 + ORR1A2 LTR MaLR 1 327 0 2 746 1682 193 126 31 chr6 21152854 21152899 -128364138 + Lx2B LINE L1 6954 6995 -5 2 746 858 268 14 0 chr6 21152923 21153136 -128363901 + B3 SINE B2 1 216 0 2 746 978 48 0 0 chr6 21153160 21153284 -128363753 + B1_Mus2 SINE Alu 11 134 -13 2 746 267 54 0 0 chr6 21153284 21153321 -128363716 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2 746 474 207 0 40 chr6 21153947 21154073 -128362964 + Lx9 LINE L1 7384 7504 -140 2 746 220 315 0 0 chr6 21154084 21154138 -128362899 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 2 746 780 296 16 99 chr6 21155287 21155719 -128361318 + BGLII_B LTR ERVK 15 410 -31 2 746 600 223 11 6 chr6 21156152 21156328 -128360709 + (TA)n Simple_repeat Simple_repeat 1 177 0 2 746 184 261 11 11 chr6 21156321 21156414 -128360623 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 746 1123 320 63 7 chr6 21156453 21156865 -128360172 - RCHARR1 DNA MER1_type -508 466 32 2 746 422 330 72 96 chr6 21157503 21157754 -128359283 - B4A SINE B4 -45 247 3 2 746 344 311 80 3 chr6 21157821 21158215 -128358822 + L1MA9 LINE L1 5163 5585 -715 2 746 1175 285 28 9 chr6 21158227 21158549 -128358488 - MTE2b LTR MaLR -9 370 43 2 746 344 295 147 16 chr6 21158567 21158812 -128358225 + L1MA9 LINE L1 5579 5855 -457 2 746 275 299 0 49 chr6 21158860 21158941 -128358096 + ORR1E LTR MaLR 1 77 -297 2 746 930 122 0 0 chr6 21158951 21159131 -128357906 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 746 393 236 0 0 chr6 21159135 21159262 -128357775 + (TCTG)n Simple_repeat Simple_repeat 4 130 0 2 746 809 267 79 45 chr6 21159264 21159531 -128357506 + ORR1E LTR MaLR 84 359 0 2 746 632 307 111 30 chr6 21159923 21161055 -128355982 + L1MD LINE L1 4160 5383 -763 2 746 525 315 93 84 chr6 21161740 21162062 -128354975 + MLT1A0 LTR MaLR 12 336 -29 2 746 22 0 0 0 chr6 21164398 21164420 -128352617 + AT_rich Low_complexity Low_complexity 1 22 0 2 746 256 204 0 101 chr6 21164979 21165137 -128351900 + C-rich Low_complexity Low_complexity 1 142 0 2 746 508 343 7 0 chr6 21171037 21171177 -128345860 - ID_B1 SINE B4 -3 221 81 2 746 443 93 0 26 chr6 21171457 21171534 -128345503 + L1Md_F2 LINE L1 6508 6582 0 2 746 343 274 0 12 chr6 21171534 21171613 -128345424 - B1_Mur1 SINE Alu -12 137 59 2 746 649 297 61 50 chr6 21172280 21172542 -128344495 - B4A SINE B4 0 292 28 2 746 351 351 0 35 chr6 21172614 21172729 -128344308 - ID_B1 SINE B4 -26 198 88 2 746 269 244 19 6 chr6 21174773 21174936 -128342101 + CT-rich Low_complexity Low_complexity 1 165 0 2 746 257 75 0 24 chr6 21176992 21177033 -128340004 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 2 746 408 99 0 0 chr6 21177249 21177320 -128339717 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 746 21 57 0 0 chr6 21178397 21178432 -128338605 + AT_rich Low_complexity Low_complexity 1 35 0 2 746 200 306 73 24 chr6 21178635 21178759 -128338278 - MIR3 SINE MIR -6 202 73 2 746 322 75 37 24 chr6 21180005 21180087 -128336950 + (TTTG)n Simple_repeat Simple_repeat 2 84 0 2 746 5941 48 3 0 chr6 21180975 21181703 -128335334 - L1Md_F2 LINE L1 0 6582 5853 2 746 4092 46 0 0 chr6 21181703 21182200 -128334837 + L1Md_F2 LINE L1 5387 5883 0 2 746 2990 72 54 23 chr6 21182592 21183021 -128334016 + L1Md_F2 LINE L1 6141 6582 0 2 746 3660 12 5 0 chr6 21183061 21183481 -128333556 - L1Md_T LINE L1 0 6582 6161 2 746 219 140 17 34 chr6 21183499 21183558 -128333479 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 746 357 24 0 0 chr6 21183566 21183608 -128333429 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 746 564 42 0 0 chr6 21183608 21183678 -128333359 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 746 401 293 111 80 chr6 21183810 21184099 -128332938 - L1M2 LINE L1 -889 5254 4957 2 746 215 31 31 0 chr6 21185078 21185110 -128331927 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 2 746 366 97 26 12 chr6 21185111 21185184 -128331853 - B1_Mus2 SINE Alu -1 146 47 2 746 243 0 0 0 chr6 21186156 21186183 -128330854 + (A)n Simple_repeat Simple_repeat 1 27 0 2 746 385 0 0 0 chr6 21186311 21186362 -128330675 - L1Md_T LINE L1 0 6582 6532 2 746 2427 50 0 0 chr6 21186362 21186665 -128330372 + L1Md_A LINE L1 6253 6555 -27 2 746 22 0 0 0 chr6 21186792 21186814 -128330223 + AT_rich Low_complexity Low_complexity 1 22 0 2 746 437 120 0 12 chr6 21187545 21187629 -128329408 + (TA)n Simple_repeat Simple_repeat 2 84 0 2 746 369 43 0 0 chr6 21187651 21187698 -128329339 + (ATTG)n Simple_repeat Simple_repeat 2 48 0 2 746 29 47 0 0 chr6 21187939 21187982 -128329055 + AT_rich Low_complexity Low_complexity 1 43 0 2 746 3164 92 2 11 chr6 21188698 21189151 -128327886 + L1_Mus4 LINE L1 6188 6636 0 2 746 734 245 110 16 chr6 21189543 21189734 -128327303 - B3 SINE B2 -5 211 3 2 746 233 384 87 17 chr6 21189998 21190297 -128326740 - L3 LINE CR1 -112 4377 4058 2 746 22 0 0 0 chr6 21190893 21190915 -128326122 + AT_rich Low_complexity Low_complexity 1 22 0 2 746 6778 59 5 1 chr6 21190915 21191769 -128325268 - L1_Mus1 LINE L1 0 6567 5711 2 746 3349 100 10 2 chr6 21191768 21192257 -128324780 + L1_Mm LINE L1 4956 5448 -435 2 746 5095 164 30 27 chr6 21192264 21193220 -128323817 - Lx2 LINE L1 0 6997 6039 2 746 358 322 49 89 chr6 21194512 21194737 -128322300 - L2c LINE L2 -1 3386 3171 2 746 333 0 0 0 chr6 21195166 21195203 -128321834 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 746 2711 113 0 15 chr6 21195437 21195883 -128321154 - L1Md_F2 LINE L1 0 6582 6168 2 746 25 31 0 0 chr6 21196537 21196569 -128320468 + AT_rich Low_complexity Low_complexity 1 32 0 2 746 249 307 50 0 chr6 21196812 21196913 -128320124 + Charlie5 DNA MER1_type 6 111 -2513 2 746 25 31 0 0 chr6 21198193 21198225 -128318812 + AT_rich Low_complexity Low_complexity 1 32 0 2 746 342 67 0 0 chr6 21198329 21198374 -128318663 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 746 252 0 0 0 chr6 21198374 21198402 -128318635 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 746 195 42 0 0 chr6 21198482 21198506 -128318531 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 746 477 302 113 16 chr6 21198525 21198710 -128318327 - B4 SINE B4 -72 220 18 3 746 387 0 0 0 chr6 21199260 21199303 -128317734 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 746 23 78 0 0 chr6 21199830 21199881 -128317156 + AT_rich Low_complexity Low_complexity 1 51 0 3 746 1944 238 80 10 chr6 21200033 21200518 -128316519 - RMER5 LTR ERV1 -15 519 1 3 746 339 276 78 16 chr6 21200518 21200647 -128316390 + B1F1 SINE Alu 12 148 -1 3 746 552 203 37 15 chr6 21201679 21201814 -128315223 + L1_Rod LINE L1 405 542 -6630 3 746 252 0 0 0 chr6 21202140 21202168 -128314869 + (A)n Simple_repeat Simple_repeat 1 28 0 3 746 1431 64 0 2 chr6 21202343 21202784 -128314253 + (TATG)n Simple_repeat Simple_repeat 1 439 0 3 746 301 326 54 0 chr6 21203762 21203854 -128313183 + MER5A DNA MER1_type 45 141 -48 3 746 212 298 0 42 chr6 21203918 21204037 -128313000 + CT-rich Low_complexity Low_complexity 2 115 0 3 746 25 0 0 0 chr6 21205254 21205279 -128311758 + AT_rich Low_complexity Low_complexity 1 25 0 3 746 1039 97 7 0 chr6 21205366 21205511 -128311526 - B1_Mus2 SINE Alu 0 147 2 3 746 753 282 31 0 chr6 21205640 21205835 -128311202 + B3 SINE B2 10 210 -6 3 746 1731 105 152 4 chr6 21208081 21208358 -128308679 - Lx LINE L1 -5 6649 6332 3 746 3886 130 16 19 chr6 21211415 21212088 -128304949 + Lx2 LINE L1 6326 6996 -1 3 746 3427 28 2 0 chr6 21212613 21213008 -128304029 - MTA_Mm LTR MaLR 0 396 1 3 746 323 127 36 0 chr6 21213017 21213072 -128303965 - HAL1-3A_ME LINE L1 -834 2024 1968 3 746 390 178 23 0 chr6 21213072 21213201 -128303836 + (TG)n Simple_repeat Simple_repeat 1 132 0 3 746 481 292 57 132 chr6 21213201 21213531 -128303506 - B4 SINE B4 -16 276 6 3 746 415 225 76 42 chr6 21213667 21213811 -128303226 + B1F1 SINE Alu 1 149 0 3 746 1138 62 0 7 chr6 21215476 21215623 -128301414 + B1_Mm SINE Alu 1 146 -1 3 746 240 59 0 0 chr6 21215625 21215659 -128301378 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 746 203 241 12 0 chr6 21215738 21215821 -128301216 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 746 23 54 0 0 chr6 21216822 21216859 -128300178 + AT_rich Low_complexity Low_complexity 1 37 0 3 746 370 244 13 0 chr6 21216982 21217060 -128299977 + ID_B1 SINE B4 107 185 -39 3 746 27 29 0 0 chr6 21218434 21218468 -128298569 + AT_rich Low_complexity Low_complexity 1 34 0 3 746 22 0 0 0 chr6 21218660 21218682 -128298355 + AT_rich Low_complexity Low_complexity 1 22 0 3 746 964 188 262 30 chr6 21219703 21220005 -128297032 - RMER10A LTR ERVL -70 372 1 3 746 246 297 54 0 chr6 21220063 21220137 -128296900 + ID4_ SINE ID 2 79 -4 3 746 903 132 7 0 chr6 21221770 21221921 -128295116 + L1Md_F2 LINE L1 6430 6581 -1 3 746 982 143 31 2 chr6 21221934 21222113 -128294924 + B2_Mm2 SINE B2 2 190 -26 3 746 42 0 0 0 chr6 21222286 21222328 -128294709 + AT_rich Low_complexity Low_complexity 1 42 0 3 746 309 68 0 0 chr6 21222482 21222526 -128294511 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 746 196 79 29 73 chr6 21223981 21224049 -128292988 + GA-rich Low_complexity Low_complexity 2 66 0 3 746 391 320 213 23 chr6 21224084 21224394 -128292643 - Lx7 LINE L1 -387 7309 6941 3 746 3073 75 62 26 chr6 21224577 21225045 -128291992 - Lx3_Mus LINE L1 -799 6210 5726 3 746 205 336 57 28 chr6 21225135 21225276 -128291761 - MIR SINE MIR -70 192 48 3 746 677 245 7 0 chr6 21226423 21226570 -128290467 + B1_Mur2 SINE Alu 2 149 0 3 746 2380 233 108 32 chr6 21226644 21227393 -128289644 - Lx9 LINE L1 -753 6891 6086 3 746 222 361 58 43 chr6 21227526 21227665 -128289372 + MIR SINE MIR 109 249 -13 3 746 35 24 0 0 chr6 21228367 21228409 -128288628 + AT_rich Low_complexity Low_complexity 1 42 0 3 746 23 0 0 0 chr6 21228874 21228897 -128288140 + AT_rich Low_complexity Low_complexity 1 23 0 3 746 725 294 18 28 chr6 21230963 21231180 -128285857 - B3 SINE B2 0 216 2 3 746 414 0 0 0 chr6 21232499 21232545 -128284492 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 747 244 0 0 0 chr6 21234616 21234653 -128282384 - L1_Mus2 LINE L1 0 6566 6530 3 747 390 364 174 40 chr6 21235018 21235432 -128281605 - L2 LINE L2 -1060 2359 1879 3 747 4541 71 12 2 chr6 21235432 21236027 -128281010 + L1_Mus1 LINE L1 5967 6567 0 3 747 390 364 174 40 chr6 21236027 21237169 -128279868 - L2 LINE L2 -1541 1878 594 3 747 531 0 0 0 chr6 21238476 21238535 -128278502 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 747 576 261 92 137 chr6 21238958 21239143 -128277894 - ORR1E LTR MaLR -2 357 158 3 747 675 78 0 0 chr6 21239143 21239246 -128277791 + (TC)n Simple_repeat Simple_repeat 2 104 0 3 747 576 261 92 137 chr6 21239246 21239331 -128277706 - ORR1E LTR MaLR -202 157 99 3 747 823 169 19 0 chr6 21239367 21239527 -128277510 + URR1A DNA MER1_type 59 221 -5 3 747 348 287 43 25 chr6 21239388 21239549 -128277488 - CYRA11_Mm Unknown Y-chromosome -299 318 155 3 747 25 0 0 0 chr6 21239928 21239953 -128277084 + AT_rich Low_complexity Low_complexity 1 25 0 3 747 2927 166 38 8 chr6 21239953 21240474 -128276563 - Lx4A LINE L1 0 7058 6522 3 747 1748 130 4 0 chr6 21240486 21240755 -128276282 - L1_Mur2 LINE L1 -7 5870 5601 3 747 2612 126 40 0 chr6 21240748 21241168 -128275869 + L1_Mur2 LINE L1 5200 5636 -241 3 747 853 289 28 20 chr6 21241171 21241418 -128275619 - ORR1D2 LTR MaLR -63 307 59 3 747 1904 177 22 54 chr6 21241422 21241792 -128275245 - ORR1B2 LTR MaLR -8 359 2 3 747 456 51 0 0 chr6 21242562 21242621 -128274416 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 747 229 200 20 0 chr6 21242622 21242672 -128274365 + (TAGG)n Simple_repeat Simple_repeat 1 51 0 3 747 447 348 7 0 chr6 21242672 21242813 -128274224 - RSINE1 SINE B4 -19 146 5 3 747 286 279 224 23 chr6 21243370 21243674 -128273363 - L1MB2 LINE L1 -3 6168 5804 3 747 351 171 0 0 chr6 21243686 21243762 -128273275 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 747 237 310 59 46 chr6 21243999 21244151 -128272886 - L1MB2 LINE L1 -664 5519 5366 3 747 289 47 0 72 chr6 21245029 21245098 -128271939 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 3 747 455 358 27 144 chr6 21245328 21245732 -128271305 - MLT1A0 LTR MaLR -5 360 4 3 747 227 266 16 0 chr6 21246378 21246442 -128270595 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 747 448 333 42 6 chr6 21246465 21246631 -128270406 - B4A SINE B4 -4 288 117 3 747 21 95 0 0 chr6 21248406 21248469 -128268568 + AT_rich Low_complexity Low_complexity 1 63 0 3 747 387 336 100 90 chr6 21249325 21249626 -128267411 + MER2 DNA MER2_type 32 335 -10 3 747 246 310 158 36 chr6 21250527 21250748 -128266289 + Charlie1a DNA MER1_type 254 501 -954 3 747 1344 127 0 0 chr6 21250774 21250986 -128266051 + Lx LINE L1 6442 6653 -1 3 747 1035 277 115 32 chr6 21251046 21251100 -128265937 + Charlie1a DNA MER1_type 674 728 -727 3 747 383 78 16 0 chr6 21251100 21251164 -128265873 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 747 1035 277 115 32 chr6 21251164 21251702 -128265335 + Charlie1a DNA MER1_type 729 1315 -140 3 747 582 294 15 85 chr6 21251944 21252145 -128264892 + B3A SINE B2 10 196 -2 3 747 293 327 49 61 chr6 21254186 21254349 -128262688 - MLT1B LTR MaLR -1 389 229 3 747 8529 91 7 8 chr6 21255486 21257419 -128259618 - L1_Mus1 LINE L1 -1 6566 4635 3 747 4105 172 14 6 chr6 21257865 21258580 -128258457 - Lx4A LINE L1 0 7058 6338 3 747 254 95 24 0 chr6 21259376 21259418 -128257619 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3 747 735 229 0 7 chr6 21259641 21259786 -128257251 + B1_Mur2 SINE Alu 4 147 -2 3 747 180 200 0 0 chr6 21259939 21259989 -128257048 + T-rich Low_complexity Low_complexity 2 51 0 3 747 438 20 0 0 chr6 21260786 21260837 -128256200 + (TTA)n Simple_repeat Simple_repeat 2 52 0 3 747 184 281 18 0 chr6 21261284 21261341 -128255696 + MIRc SINE MIR 65 122 -146 3 747 524 341 11 22 chr6 21262142 21262297 -128254740 + B3A SINE B2 18 174 -24 3 747 1392 44 0 0 chr6 21262297 21262477 -128254560 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 747 524 341 11 22 chr6 21262477 21262504 -128254533 + B3A SINE B2 175 198 0 3 747 25 51 0 0 chr6 21264065 21264104 -128252933 + AT_rich Low_complexity Low_complexity 1 39 0 3 747 1709 103 7 22 chr6 21264296 21264574 -128252463 + L1_Mus3 LINE L1 6365 6638 0 3 747 664 322 0 0 chr6 21264688 21264834 -128252203 + RSINE1 SINE B4 4 149 -16 3 747 195 100 0 0 chr6 21264838 21264868 -128252169 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 747 456 19 0 0 chr6 21264868 21264920 -128252117 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 3 747 894 131 0 0 chr6 21265722 21265867 -128251170 + (TTCC)n Simple_repeat Simple_repeat 4 148 0 3 747 647 272 249 30 chr6 21265877 21266209 -128250828 - MTD LTR MaLR -12 407 3 3 747 530 42 0 27 chr6 21266788 21266862 -128250175 + (CATA)n Simple_repeat Simple_repeat 3 74 0 3 747 3351 254 46 58 chr6 21266862 21267980 -128249057 - Lx9 LINE L1 -182 7462 6359 3 747 974 58 0 7 chr6 21268791 21268930 -128248107 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 3 747 29 0 0 0 chr6 21269597 21269626 -128247411 + AT_rich Low_complexity Low_complexity 1 29 0 3 747 25 0 0 0 chr6 21270079 21270104 -128246933 + AT_rich Low_complexity Low_complexity 1 25 0 3 747 438 36 0 0 chr6 21270349 21270405 -128246632 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 747 255 311 181 28 chr6 21270751 21270933 -128246104 - L2a LINE L2 -275 3151 2942 3 747 347 341 84 44 chr6 21271617 21271844 -128245193 - MLT1I LTR MaLR -74 337 102 3 747 829 275 102 39 chr6 21272625 21273087 -128243950 - Lx9 LINE L1 -22 7622 7132 3 747 1332 37 0 0 chr6 21273089 21273251 -128243786 + (TTCCC)n Simple_repeat Simple_repeat 5 166 0 3 747 249 33 0 0 chr6 21273313 21273343 -128243694 + (TTG)n Simple_repeat Simple_repeat 3 32 0 3 747 628 324 82 39 chr6 21273346 21273628 -128243409 - L1MA8 LINE L1 -145 6146 5841 4 747 396 0 0 0 chr6 21273628 21273672 -128243365 + (TTA)n Simple_repeat Simple_repeat 1 44 0 4 747 628 324 82 39 chr6 21273672 21273877 -128243160 - L1MA8 LINE L1 -451 5840 5639 4 747 390 289 122 19 chr6 21274051 21274256 -128242781 + RMER20B LTR ERVK 126 351 -276 4 747 28 0 0 0 chr6 21276164 21276192 -128240845 + AT_rich Low_complexity Low_complexity 1 28 0 4 747 288 311 28 28 chr6 21277383 21277489 -128239548 + RLTR23 LTR ERV1 324 429 -1 4 747 501 80 0 0 chr6 21277568 21277643 -128239394 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 747 649 169 7 7 chr6 21278518 21278655 -128238382 + CT-rich Low_complexity Low_complexity 4 140 0 4 747 233 143 62 16 chr6 21278746 21278810 -128238227 - Lx9 LINE L1 -4 7640 7574 4 747 270 0 0 0 chr6 21279132 21279162 -128237875 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 747 26 30 0 0 chr6 21279170 21279203 -128237834 + AT_rich Low_complexity Low_complexity 1 33 0 4 747 501 47 0 0 chr6 21279414 21279478 -128237559 + (CTA)n Simple_repeat Simple_repeat 3 66 0 4 747 278 320 19 37 chr6 21279643 21279750 -128237287 + MIRc SINE MIR 12 116 -152 4 747 282 147 0 0 chr6 21280411 21280479 -128236558 + (TC)n Simple_repeat Simple_repeat 2 69 0 4 747 204 167 0 0 chr6 21280478 21280526 -128236511 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 747 744 177 0 0 chr6 21281352 21281493 -128235544 + (TA)n Simple_repeat Simple_repeat 1 141 0 4 747 3042 58 37 0 chr6 21281851 21282233 -128234804 - MTA_Mm LTR MaLR 0 396 1 4 747 207 141 47 0 chr6 21283988 21284052 -128232985 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 747 184 0 62 31 chr6 21285944 21285976 -128231061 + (CACTA)n Simple_repeat Simple_repeat 5 37 0 4 747 331 359 33 0 chr6 21287712 21287804 -128229233 + RSINE1 SINE B4 54 148 -17 4 747 26 50 0 0 chr6 21289189 21289229 -128227808 + AT_rich Low_complexity Low_complexity 1 40 0 4 747 589 236 62 20 chr6 21290060 21290242 -128226795 - B3 SINE B2 -9 186 6 4 747 655 312 132 35 chr6 21290465 21290812 -128226225 - Lx8 LINE L1 -968 6728 6347 4 747 390 284 39 0 chr6 21291058 21291160 -128225877 + PB1D7 SINE Alu 3 108 -12 4 747 200 308 0 0 chr6 21291496 21291548 -128225489 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 4 747 253 321 33 67 chr6 21291548 21291668 -128225369 - RMER12 LTR ERVK -467 855 740 4 747 24 0 0 0 chr6 21292891 21292915 -128224122 + AT_rich Low_complexity Low_complexity 1 24 0 4 747 897 92 0 0 chr6 21294800 21294942 -128222095 + (TCCA)n Simple_repeat Simple_repeat 1 142 0 4 747 24 53 0 0 chr6 21295338 21295376 -128221661 + AT_rich Low_complexity Low_complexity 1 38 0 4 747 22 70 0 0 chr6 21295953 21295996 -128221041 + AT_rich Low_complexity Low_complexity 1 43 0 4 747 188 370 45 52 chr6 21296312 21296446 -128220591 - MER5A DNA MER1_type -9 180 48 4 747 24 0 0 0 chr6 21297295 21297319 -128219718 + AT_rich Low_complexity Low_complexity 1 24 0 4 747 647 255 42 11 chr6 21298347 21298537 -128218500 + L1M2 LINE L1 5593 5788 -512 4 747 542 276 146 0 chr6 21298746 21298931 -128218106 + B3 SINE B2 1 212 -4 4 747 23 33 0 0 chr6 21299155 21299185 -128217852 + AT_rich Low_complexity Low_complexity 1 30 0 4 747 711 35 0 0 chr6 21299265 21299351 -128217686 + (TA)n Simple_repeat Simple_repeat 1 86 0 4 747 476 377 82 9 chr6 21299446 21299786 -128217251 - MLT1A0 LTR MaLR 0 365 1 4 747 318 303 238 19 chr6 21299786 21300041 -128216996 + MLT1D LTR MaLR 179 489 -16 4 747 22 0 0 0 chr6 21300757 21300779 -128216258 + AT_rich Low_complexity Low_complexity 1 22 0 4 747 279 0 0 0 chr6 21301949 21301980 -128215057 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 747 2506 73 132 28 chr6 21302800 21303195 -128213842 - RLTR1B LTR ERV1 -76 436 1 4 747 1465 248 17 3 chr6 21303195 21303543 -128213494 - MMERGLN-int LTR ERV1 0 7556 7204 4 747 3046 57 23 49 chr6 21303552 21303979 -128213058 - L1_Mus2 LINE L1 0 6566 6151 4 747 414 53 0 0 chr6 21304598 21304655 -128212382 + (A)n Simple_repeat Simple_repeat 1 57 0 4 747 202 180 33 0 chr6 21305522 21305583 -128211454 + CT-rich Low_complexity Low_complexity 2 64 0 4 747 183 42 0 0 chr6 21306698 21306722 -128210315 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 747 195 316 48 87 chr6 21308204 21308308 -128208729 - MIRb SINE MIR -121 147 48 4 747 202 182 0 35 chr6 21308416 21308473 -128208564 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 747 590 245 91 0 chr6 21308716 21308859 -128208178 + RSINE1 SINE B4 6 161 -4 4 747 21 71 0 0 chr6 21309574 21309616 -128207421 + AT_rich Low_complexity Low_complexity 1 42 0 4 747 376 233 8 15 chr6 21311186 21311317 -128205720 + CT-rich Low_complexity Low_complexity 3 132 0 4 747 5041 257 71 58 chr6 21311736 21312083 -128204954 - Lx7 LINE L1 0 7696 7382 4 747 459 0 0 0 chr6 21312083 21312134 -128204903 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 4 747 5041 257 71 58 chr6 21312134 21312162 -128204875 - Lx7 LINE L1 -315 7381 7360 4 747 226 73 49 0 chr6 21312162 21312203 -128204834 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 747 5041 257 71 58 chr6 21312203 21313412 -128203625 - Lx7 LINE L1 -337 7359 6091 4 747 366 332 78 60 chr6 21313471 21313689 -128203348 - RMER12 LTR ERVK 0 1322 1101 4 747 4483 155 20 15 chr6 21313858 21314659 -128202378 - RLTR22_Mur LTR ERVK -1043 805 1 4 747 727 259 4 56 chr6 21314659 21314862 -128202175 - Lx7 LINE L1 -1659 6037 5846 4 747 2843 87 2 8 chr6 21314862 21315256 -128201781 - MTA_Mm LTR MaLR -2 394 3 4 747 727 259 4 56 chr6 21315256 21315318 -128201719 - Lx7 LINE L1 -1851 5845 5786 4 747 1652 33 9 5 chr6 21315319 21315530 -128201507 - L1Md_F3 LINE L1 -1 6583 6372 4 747 2074 31 16 12 chr6 21315530 21315787 -128201250 + L1Md_F3 LINE L1 6106 6363 -221 4 747 1570 230 33 6 chr6 21315779 21316142 -128200895 - Lx7 LINE L1 -84 5796 5424 4 747 5944 209 31 13 chr6 21316145 21317576 -128199461 - Lx7 LINE L1 -1813 4067 2611 4 747 201 239 0 0 chr6 21320905 21320951 -128196086 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 747 447 364 113 13 chr6 21320956 21321187 -128195850 + Tigger5 DNA MER2_type 4 257 -2149 4 747 230 95 24 0 chr6 21321269 21321311 -128195726 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 747 705 271 46 17 chr6 21321697 21321937 -128195100 + Lx6 LINE L1 7200 7446 -14 4 747 189 0 0 0 chr6 21321943 21321964 -128195073 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 4 747 1170 259 141 18 chr6 21322282 21322777 -128194260 + Lx7 LINE L1 7125 7680 -16 4 747 180 0 0 0 chr6 21322789 21322809 -128194228 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 747 187 373 100 0 chr6 21323785 21323895 -128193142 + MIRb SINE MIR 110 230 -38 4 747 3468 79 43 0 chr6 21325277 21325769 -128191268 - L1_Mus3 LINE L1 0 6638 6126 4 747 9245 70 2 2 chr6 21326385 21328295 -128188742 - L1Md_F2 LINE L1 -1 6581 4671 4 747 288 0 0 0 chr6 21328783 21328815 -128188222 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 4 747 876 280 0 9 chr6 21328864 21329077 -128187960 + B3 SINE B2 6 216 0 4 747 22 0 0 0 chr6 21329362 21329384 -128187653 + AT_rich Low_complexity Low_complexity 1 22 0 4 747 266 258 30 61 chr6 21329723 21329822 -128187215 + MTE2b LTR MaLR 280 375 -4 4 747 243 0 0 0 chr6 21329845 21329872 -128187165 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 747 27 0 0 0 chr6 21331894 21331921 -128185116 + AT_rich Low_complexity Low_complexity 1 27 0 4 747 706 120 8 8 chr6 21333768 21333894 -128183143 + (TAGA)n Simple_repeat Simple_repeat 2 127 0 4 747 23 0 0 0 chr6 21333921 21333944 -128183093 + AT_rich Low_complexity Low_complexity 1 23 0 4 747 388 308 185 47 chr6 21334073 21334414 -128182623 - MLT1B LTR MaLR 0 390 3 4 747 250 301 72 36 chr6 21334496 21334717 -128182320 + Charlie1a DNA MER1_type 1179 1407 -48 4 747 297 0 0 0 chr6 21334987 21335020 -128182017 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 747 3002 117 42 15 chr6 21335032 21335554 -128181483 - RMER17A2 LTR ERVK -367 539 4 4 747 180 374 19 48 chr6 21335647 21335751 -128181286 - L3 LINE CR1 -23 4485 4385 4 747 192 179 0 0 chr6 21336089 21336128 -128180909 + CT-rich Low_complexity Low_complexity 3 41 0 4 747 252 288 41 41 chr6 21336218 21336363 -128180674 - B1F1 SINE Alu -4 145 1 4 747 523 360 49 26 chr6 21336436 21336781 -128180256 - L3 LINE CR1 -243 4246 3894 4 747 1223 257 92 63 chr6 21336886 21337343 -128179694 + RMER20A LTR ERVK 47 516 0 4 747 336 24 0 0 chr6 21337353 21337394 -128179643 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 747 226 95 0 0 chr6 21337437 21337479 -128179558 + B3 SINE B2 175 216 0 4 747 281 319 119 23 chr6 21337852 21338045 -128178992 - ORR1E LTR MaLR -167 203 6 4 747 382 312 179 31 chr6 21338111 21338783 -128178254 - Lx9 LINE L1 -19 7625 6855 4 747 420 324 22 58 chr6 21338797 21339023 -128178014 + Lx9 LINE L1 5781 5998 -1646 4 747 356 299 61 22 chr6 21339080 21339261 -128177776 - B3A SINE B2 -9 189 2 4 747 21 89 0 0 chr6 21339269 21339325 -128177712 + AT_rich Low_complexity Low_complexity 1 56 0 4 747 1978 190 53 3 chr6 21340951 21341326 -128175711 - ORR1B1 LTR MaLR 0 394 1 4 747 1134 81 0 7 chr6 21343627 21343776 -128173261 + B1_Mus1 SINE Alu 1 148 0 4 747 35280 36 1 0 chr6 21343956 21349849 -128167188 + L1Md_T LINE L1 1 5589 -297 4 747 8951 7 0 0 chr6 21349849 21350845 -128166192 + L1Md_T LINE L1 5590 6585 0 4 747 330 26 0 0 chr6 21350858 21350897 -128166140 + (A)n Simple_repeat Simple_repeat 1 39 0 4 747 1126 69 0 0 chr6 21357156 21357301 -128159736 + B1_Mm SINE Alu 2 146 -1 4 747 21 57 0 0 chr6 21357586 21357621 -128159416 + AT_rich Low_complexity Low_complexity 1 35 0 4 747 1199 310 130 41 chr6 21358106 21358712 -128158325 - Lx7 LINE L1 -686 7010 6351 4 747 27 29 0 0 chr6 21359268 21359302 -128157735 + AT_rich Low_complexity Low_complexity 1 34 0 4 747 246 339 26 26 chr6 21359313 21359428 -128157609 - MIRb SINE MIR -100 168 54 4 747 299 341 58 135 chr6 21359439 21359646 -128157391 + MTE2a LTR MaLR 1 191 -188 4 747 333 323 0 21 chr6 21359731 21359826 -128157211 - Lx8 LINE L1 -827 6646 6554 4 747 647 340 43 32 chr6 21359830 21360110 -128156927 + MTE2a LTR MaLR 96 378 -1 5 747 222 136 0 0 chr6 21360180 21360224 -128156813 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 747 888 86 55 0 chr6 21360702 21360830 -128156207 - Lx3_Mus LINE L1 -276 6733 6599 5 747 443 33 16 0 chr6 21361531 21361592 -128155445 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 747 558 313 14 3 chr6 21361594 21361763 -128155274 - B3 SINE B2 -26 172 1 5 747 1591 57 62 0 chr6 21362170 21362380 -128154657 - L1_Mus1 LINE L1 -4 6563 6341 5 747 215 173 189 19 chr6 21364182 21364235 -128152802 + MIR SINE MIR 8 69 -193 5 747 297 298 129 73 chr6 21364330 21364562 -128152475 - MTEb LTR MaLR -134 245 1 5 748 194 62 31 0 chr6 21364823 21364855 -128152182 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 748 232 388 80 22 chr6 21364965 21365102 -128151935 - MLT1N2 LTR MaLR -45 517 373 5 748 623 291 39 0 chr6 21365520 21365702 -128151335 - B3 SINE B2 0 216 28 5 748 200 161 0 16 chr6 21366230 21366293 -128150744 + CT-rich Low_complexity Low_complexity 2 63 0 5 748 227 31 0 30 chr6 21366339 21366372 -128150665 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 748 510 17 0 0 chr6 21366372 21366430 -128150607 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 748 326 341 87 32 chr6 21367000 21367218 -128149819 - MIRb SINE MIR -16 252 23 5 748 486 0 0 0 chr6 21367716 21367770 -128149267 + (TTA)n Simple_repeat Simple_repeat 3 56 0 5 748 261 0 0 0 chr6 21368987 21369016 -128148021 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 748 213 267 33 0 chr6 21369022 21369082 -128147955 + (CATA)n Simple_repeat Simple_repeat 1 62 0 5 748 310 278 42 13 chr6 21369133 21369220 -128147817 + PB1D10 SINE Alu 7 98 -51 5 748 217 356 0 0 chr6 21369302 21369361 -128147676 + ID4_ SINE ID 23 81 -2 5 748 2113 295 21 0 chr6 21370578 21371114 -128145923 - Lx5 LINE L1 -3 7047 6511 5 748 315 301 0 0 chr6 21371119 21371202 -128145835 - Lx5 LINE L1 -695 6355 6273 5 748 254 73 0 24 chr6 21371416 21371458 -128145579 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 748 587 195 16 24 chr6 21372110 21372236 -128144801 + ORR1D1 LTR MaLR 1 125 -249 5 748 601 31 52 0 chr6 21372748 21372844 -128144193 + (TA)n Simple_repeat Simple_repeat 1 101 0 5 748 453 316 29 63 chr6 21372949 21373155 -128143882 - Lx7 LINE L1 -659 7037 6839 5 748 956 353 58 8 chr6 21373473 21373941 -128143096 - MLT1D LTR MaLR 0 505 15 5 748 25 31 0 0 chr6 21377442 21377474 -128139563 + AT_rich Low_complexity Low_complexity 1 32 0 5 748 422 332 19 10 chr6 21381221 21381428 -128135609 + L1MC1 LINE L1 6119 6327 -6 5 748 191 36 0 35 chr6 21382059 21382088 -128134949 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 748 23 0 0 0 chr6 21383193 21383216 -128133821 + AT_rich Low_complexity Low_complexity 1 23 0 5 748 238 173 39 0 chr6 21383672 21383724 -128133313 + (TCTCTG)n Simple_repeat Simple_repeat 3 56 0 5 748 230 337 65 11 chr6 21384461 21384554 -128132483 + PB1D10 SINE Alu 18 115 -2 5 748 2364 267 159 25 chr6 21384999 21385857 -128131180 - Lx6 LINE L1 -26 7434 6244 5 748 3221 36 18 0 chr6 21385857 21386246 -128130791 - MTA_Mm LTR MaLR 0 396 1 5 748 1055 330 78 98 chr6 21386246 21386554 -128130483 - Lx6 LINE L1 -807 6243 5894 5 748 327 325 18 67 chr6 21387318 21387542 -128129495 - L2 LINE L2 -926 2493 2281 5 748 415 368 39 7 chr6 21388112 21388391 -128128646 + B4A SINE B4 2 289 -3 5 748 564 129 99 0 chr6 21388747 21388848 -128128189 - L1Md_F2 LINE L1 -12 6570 6460 5 748 1923 76 3 52 chr6 21388851 21389157 -128127880 - RLTRETN_Mm LTR ERVK -31 291 1 5 748 6557 60 1 4 chr6 21389157 21389984 -128127053 - L1Md_F2 LINE L1 -116 6466 5642 5 748 8136 45 3 4 chr6 21389979 21391393 -128125644 - L1Md_F2 LINE L1 0 6582 5171 5 748 6029 65 0 0 chr6 21391390 21392162 -128124875 + L1Md_F2 LINE L1 4396 5167 -716 5 748 560 133 0 0 chr6 21392159 21392252 -128124785 - L1Md_F2 LINE L1 -928 5656 5558 5 748 21 0 0 0 chr6 21392405 21392426 -128124611 + AT_rich Low_complexity Low_complexity 1 21 0 5 748 238 208 0 0 chr6 21392946 21392999 -128124038 + A-rich Low_complexity Low_complexity 1 53 0 5 748 306 152 0 0 chr6 21393283 21393342 -128123695 + CT-rich Low_complexity Low_complexity 1 59 0 5 748 255 167 21 0 chr6 21394026 21394074 -128122963 + Lx4B LINE L1 6646 6694 -364 5 748 4235 116 13 8 chr6 21394653 21395288 -128121749 + Lx LINE L1 5957 6594 -60 5 748 368 98 0 0 chr6 21395328 21395389 -128121648 - Lx LINE L1 -269 6385 6325 5 748 415 103 0 0 chr6 21395389 21395457 -128121580 + Lx LINE L1 6581 6648 -6 5 748 835 148 21 14 chr6 21395702 21395846 -128121191 + B1_Mus1 SINE Alu 2 146 -2 5 748 275 253 13 13 chr6 21397363 21397439 -128119598 + Charlie4a DNA MER1_type 206 281 -227 5 748 1665 208 28 11 chr6 21397481 21397791 -128119246 + RMER6D LTR ERVK 1 312 -408 5 748 2475 103 0 3 chr6 21397791 21398179 -128118858 + L1_Mus4 LINE L1 6273 6636 0 5 748 1665 208 28 11 chr6 21398179 21398221 -128118816 + RMER6D LTR ERVK 313 361 -359 5 748 714 162 13 13 chr6 21398221 21398377 -128118660 + GA-rich Low_complexity Low_complexity 3 158 0 5 748 350 195 11 0 chr6 21398396 21398483 -128118554 + GA-rich Low_complexity Low_complexity 2 89 0 5 748 393 58 0 0 chr6 21398817 21398869 -128118168 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 748 278 308 184 26 chr6 21398884 21399074 -128117963 - Lx9 LINE L1 -190 7454 7235 5 748 21 71 0 0 chr6 21399996 21400038 -128116999 + AT_rich Low_complexity Low_complexity 1 42 0 5 748 21 0 0 0 chr6 21400163 21400184 -128116853 + AT_rich Low_complexity Low_complexity 1 21 0 5 748 266 305 14 41 chr6 21400525 21400722 -128116315 + (CATA)n Simple_repeat Simple_repeat 1 191 0 5 748 197 210 0 16 chr6 21400735 21400798 -128116239 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 748 353 296 6 36 chr6 21401054 21401219 -128115818 + (CATATA)n Simple_repeat Simple_repeat 3 162 0 5 748 310 215 86 0 chr6 21401677 21401770 -128115267 + L1MA5 LINE L1 5379 5479 -821 5 748 35442 43 1 3 chr6 21401902 21407107 -128109930 + L1Md_T LINE L1 298 5589 -297 5 748 8295 37 0 1 chr6 21407107 21408104 -128108933 + L1Md_T LINE L1 5590 6585 0 5 748 1394 327 33 15 chr6 21408104 21408479 -128108558 + L1MA5 LINE L1 5616 6274 -26 5 748 224 120 20 0 chr6 21408875 21408925 -128108112 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 748 878 133 35 7 chr6 21408932 21409076 -128107961 - B1_Mur3 SINE Alu 0 149 2 5 748 4051 42 2 6 chr6 21409238 21409737 -128107300 + L1Md_F2 LINE L1 6084 6580 -2 5 748 1614 183 37 12 chr6 21411384 21411437 -128105600 - ORR1A4 LTR MaLR 0 329 277 5 748 502 128 9 44 chr6 21411437 21411551 -128105486 + Lx LINE L1 6538 6647 -7 5 748 1614 183 37 12 chr6 21411551 21411818 -128105219 - ORR1A4 LTR MaLR -53 276 1 5 748 249 296 57 96 chr6 21413353 21413377 -128103660 - MLT1J LTR MaLR -361 151 129 5 748 1219 71 33 0 chr6 21413377 21413559 -128103478 + L1_Mus3 LINE L1 6441 6628 -10 5 748 249 296 57 96 chr6 21413559 21413691 -128103346 - MLT1J LTR MaLR -384 128 1 5 748 28 61 0 0 chr6 21415047 21415096 -128101941 + AT_rich Low_complexity Low_complexity 1 49 0 5 748 255 31 0 0 chr6 21415262 21415294 -128101743 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 748 1373 322 84 25 chr6 21415337 21416143 -128100894 - Lx9 LINE L1 -259 7385 6532 5 748 263 52 16 49 chr6 21416146 21416207 -128100830 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5 748 1161 61 0 0 chr6 21416212 21416359 -128100678 - B1_Mus2 SINE Alu 0 147 1 5 748 364 234 19 60 chr6 21416359 21416491 -128100546 - Lx9 LINE L1 -1116 6528 6265 5 748 488 317 75 38 chr6 21416550 21416763 -128100274 + Lx8 LINE L1 6968 7188 -285 5 748 315 173 0 0 chr6 21416828 21416909 -128100128 + (CAGA)n Simple_repeat Simple_repeat 4 84 0 5 748 414 0 0 0 chr6 21418223 21418269 -128098768 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 5 748 3651 39 0 7 chr6 21418653 21419098 -128097939 - L1Md_T LINE L1 -1 6581 6140 5 748 798 185 0 58 chr6 21419766 21419938 -128097099 + B2_Mm2 SINE B2 1 162 -33 5 748 423 0 0 0 chr6 21419941 21419988 -128097049 + (TAA)n Simple_repeat Simple_repeat 2 48 0 5 748 27 49 0 0 chr6 21419989 21420030 -128097007 + AT_rich Low_complexity Low_complexity 1 41 0 5 748 22 0 0 0 chr6 21420067 21420089 -128096948 + AT_rich Low_complexity Low_complexity 1 22 0 5 748 787 180 17 40 chr6 21420109 21420283 -128096754 - Lx7 LINE L1 -2 7694 7525 5 748 372 188 155 10 chr6 21420283 21420380 -128096657 + MT2A LTR ERVL 1 111 -422 5 748 571 325 103 46 chr6 21420553 21420814 -128096223 + B4A SINE B4 11 286 -6 5 748 207 150 50 0 chr6 21421368 21421408 -128095629 + (CATG)n Simple_repeat Simple_repeat 1 42 0 5 748 714 160 53 13 chr6 21421555 21421707 -128095330 - Arthur1A DNA Tip100 -19 158 1 5 748 255 61 0 0 chr6 21422564 21422597 -128094440 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 748 330 295 45 11 chr6 21423596 21423685 -128093352 + MamSINE1 SINE tRNA 24 115 -175 5 748 528 16 0 0 chr6 21423948 21424009 -128093028 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 748 1236 96 10 20 chr6 21424011 21424212 -128092825 - L1_Mus3 LINE L1 -15 6623 6425 5 748 509 303 52 26 chr6 21424214 21424407 -128092630 - B3A SINE B2 0 198 1 5 748 31 82 0 0 chr6 21424447 21424520 -128092517 + AT_rich Low_complexity Low_complexity 1 73 0 5 748 3829 85 8 2 chr6 21424541 21425062 -128091975 + L1_Mus3 LINE L1 6113 6636 -2 5 748 6667 97 32 52 chr6 21426173 21427343 -128089694 + L1_Mur1 LINE L1 4256 5402 -484 5 748 4921 56 0 0 chr6 21427430 21428037 -128089000 - L1_Mm LINE L1 0 5883 5277 5 748 2005 54 0 15 chr6 21428037 21428301 -128088736 + L1Md_F2 LINE L1 6323 6582 0 5 748 268 385 96 64 chr6 21429354 21429634 -128087403 - B4A SINE B4 -1 291 3 5 748 1638 239 75 50 chr6 21429989 21430471 -128086566 - RLTR40 LTR ERVK -10 807 245 5 748 3132 109 124 4 chr6 21430471 21430970 -128086067 + Lx LINE L1 6086 6644 -10 5 748 324 70 0 0 chr6 21430970 21431013 -128086024 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 748 1638 233 77 60 chr6 21431013 21431217 -128085820 - RLTR40 LTR ERVK -573 244 17 5 748 202 269 87 61 chr6 21431650 21431765 -128085272 + L2a LINE L2 3221 3338 -88 5 748 23 0 0 0 chr6 21431808 21431831 -128085206 + AT_rich Low_complexity Low_complexity 1 23 0 5 748 2872 54 5 13 chr6 21434378 21434754 -128082283 - L1Md_F2 LINE L1 -3 6579 6207 5 748 1869 138 72 3 chr6 21434898 21435204 -128081833 + ORR1A2 LTR MaLR 1 327 0 6 748 545 0 15 0 chr6 21435504 21435569 -128081468 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 748 396 82 0 0 chr6 21435569 21435629 -128081408 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 748 2147 244 41 4 chr6 21435725 21436256 -128080781 - Lx5 LINE L1 0 7050 6500 6 748 356 130 43 0 chr6 21436253 21436322 -128080715 + L1_Mur3 LINE L1 2628 2699 -3181 6 748 2942 170 32 34 chr6 21436472 21437062 -128079975 - Lx4B LINE L1 -1 7057 6469 6 748 495 346 6 19 chr6 21438134 21438296 -128078741 + RSINE1 SINE B4 4 163 -2 6 748 432 0 0 0 chr6 21438297 21438345 -128078692 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 748 222 37 0 0 chr6 21438484 21438511 -128078526 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 748 276 30 0 0 chr6 21440605 21440638 -128076399 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 6 748 378 0 0 0 chr6 21440822 21440864 -128076173 + (TGG)n Simple_repeat Simple_repeat 3 44 0 6 748 414 0 0 0 chr6 21440864 21440910 -128076127 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 748 183 80 0 0 chr6 21440958 21440983 -128076054 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 6 748 23 78 0 0 chr6 21441127 21441178 -128075859 + AT_rich Low_complexity Low_complexity 1 51 0 6 748 425 369 111 45 chr6 21441256 21441654 -128075383 + MLT1E2 LTR MaLR 41 464 -163 6 748 247 284 21 10 chr6 21441985 21442081 -128074956 + MLT1D LTR MaLR 409 505 0 6 748 22 56 0 0 chr6 21442419 21442455 -128074582 + AT_rich Low_complexity Low_complexity 1 36 0 6 748 3755 169 47 3 chr6 21442467 21442819 -128074218 - RMER6D LTR ERVK 0 720 369 6 748 402 21 0 0 chr6 21442819 21442866 -128074171 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 748 3755 169 47 3 chr6 21442866 21443195 -128073842 - RMER6D LTR ERVK -352 368 10 6 748 1083 297 168 27 chr6 21443362 21443840 -128073197 + Lx7 LINE L1 6309 6846 -850 6 748 302 0 26 0 chr6 21443840 21443878 -128073159 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 748 973 297 124 38 chr6 21443878 21444295 -128072742 + Lx7 LINE L1 6847 7306 -390 6 748 464 0 18 0 chr6 21444311 21444367 -128072670 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 748 30 45 0 0 chr6 21444535 21444579 -128072458 + AT_rich Low_complexity Low_complexity 1 44 0 6 748 29 47 0 0 chr6 21444628 21444671 -128072366 + AT_rich Low_complexity Low_complexity 1 43 0 6 748 2941 119 34 6 chr6 21444813 21445279 -128071758 - Lx3A LINE L1 -8 6973 6495 6 748 239 159 10 31 chr6 21445371 21445468 -128071569 + (TA)n Simple_repeat Simple_repeat 1 95 0 6 748 467 285 37 2 chr6 21445488 21445666 -128071371 - MT2A LTR ERVL -63 538 347 6 748 437 240 7 136 chr6 21445724 21445864 -128071173 - MT2A LTR ERVL -410 123 2 6 748 21 0 0 0 chr6 21446388 21446409 -128070628 + AT_rich Low_complexity Low_complexity 1 21 0 6 748 396 252 10 29 chr6 21446445 21446547 -128070490 - MT2A LTR ERVL -433 100 1 6 748 192 125 0 0 chr6 21449631 21449663 -128067374 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 748 973 317 73 21 chr6 21451228 21451611 -128065426 + MTD LTR MaLR 1 403 -16 6 748 23 78 0 0 chr6 21452419 21452470 -128064567 + AT_rich Low_complexity Low_complexity 1 51 0 6 748 3423 122 4 24 chr6 21453653 21454192 -128062845 - Lx2 LINE L1 -1 6996 6469 6 748 180 0 0 0 chr6 21454799 21454819 -128062218 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 748 465 19 0 0 chr6 21454820 21454874 -128062163 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 748 1126 69 7 0 chr6 21455126 21455271 -128061766 - B1_Mus1 SINE Alu 0 148 3 6 748 8441 215 55 82 chr6 21455831 21459573 -128057464 + Lx6 LINE L1 3674 7581 -115 6 748 510 139 37 0 chr6 21459714 21459822 -128057215 - L1_Mus3 LINE L1 -4 6634 6523 6 748 252 180 0 0 chr6 21459823 21459873 -128057164 + L1_Mus3 LINE L1 6535 6584 -54 6 748 537 16 0 0 chr6 21460575 21460637 -128056400 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 748 273 167 0 0 chr6 21460662 21460716 -128056321 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 748 537 30 0 0 chr6 21462079 21462146 -128054891 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 748 181 423 113 0 chr6 21462228 21462325 -128054712 + L2 LINE L2 1297 1404 -2015 6 748 4623 52 0 2 chr6 21462327 21462901 -128054136 + L1Md_F2 LINE L1 5997 6569 -13 6 748 180 0 0 0 chr6 21462906 21462926 -128054111 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 748 673 313 9 0 chr6 21463042 21463253 -128053784 + B3 SINE B2 4 216 0 6 748 739 265 60 5 chr6 21463318 21463534 -128053503 + Lx6 LINE L1 7231 7458 -2 6 748 29 47 0 0 chr6 21464208 21464251 -128052786 + AT_rich Low_complexity Low_complexity 1 43 0 6 748 182 246 76 76 chr6 21464360 21464426 -128052611 - L4 LINE RTE -1772 257 192 6 748 301 264 279 20 chr6 21465381 21465578 -128051459 + L1MC3 LINE L1 7317 7564 -221 6 748 198 0 0 0 chr6 21465856 21465878 -128051159 + (TTTAA)n Simple_repeat Simple_repeat 4 25 0 6 748 6129 154 25 47 chr6 21465879 21467071 -128049966 - Lx4A LINE L1 -4 7054 5889 6 748 525 110 0 0 chr6 21467321 21467412 -128049625 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 748 336 143 0 0 chr6 21467446 21467502 -128049535 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 748 210 370 110 0 chr6 21467837 21467937 -128049100 - MIR SINE MIR -56 152 42 6 748 408 40 0 0 chr6 21468171 21468221 -128048816 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 748 219 295 12 25 chr6 21468234 21468314 -128048723 + (TATG)n Simple_repeat Simple_repeat 4 82 0 6 748 23 0 0 0 chr6 21468490 21468513 -128048524 + AT_rich Low_complexity Low_complexity 1 23 0 6 748 241 309 105 88 chr6 21469011 21469192 -128047845 + ORR1E LTR MaLR 1 184 -175 6 748 2739 155 9 2 chr6 21470747 21471181 -128045856 + Lx4B LINE L1 6357 6793 -265 6 748 3802 164 94 51 chr6 21471181 21471481 -128045556 + RLTR25A LTR ERVK 227 514 -589 6 748 228 86 0 0 chr6 21471481 21471516 -128045521 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 748 3802 164 94 51 chr6 21471516 21472056 -128044981 + RLTR25A LTR ERVK 515 1103 0 6 748 363 23 0 0 chr6 21472660 21472704 -128044333 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 748 1541 238 19 8 chr6 21473059 21473420 -128043617 + Lx9 LINE L1 7084 7448 -196 6 748 1581 215 7 88 chr6 21473461 21473894 -128043143 - RMER10B LTR ERVL 0 398 1 6 748 370 234 18 27 chr6 21473907 21474017 -128043020 + Lx9 LINE L1 7531 7639 -5 6 748 40 37 0 0 chr6 21474684 21474738 -128042299 + AT_rich Low_complexity Low_complexity 1 54 0 6 748 7203 114 36 1 chr6 21474960 21476590 -128040447 - Lx LINE L1 -7 6647 4968 6 748 246 286 102 0 chr6 21477836 21477934 -128039103 - PB1D9 SINE Alu -11 109 2 6 748 4060 7 0 0 chr6 21479692 21480146 -128036891 - L1Md_T LINE L1 0 6582 6129 6 748 205 333 68 14 chr6 21481638 21481711 -128035326 - MIRm SINE MIR -3 273 197 6 748 711 254 132 0 chr6 21482782 21482971 -128034066 - B3 SINE B2 0 216 3 6 748 939 278 135 18 chr6 21483061 21483395 -128033642 - MTEa LTR MaLR -5 374 2 6 748 711 290 19 0 chr6 21483555 21483717 -128033320 + B3 SINE B2 1 165 -51 6 748 279 54 0 0 chr6 21483724 21483761 -128033276 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 748 23 0 0 0 chr6 21483801 21483824 -128033213 + AT_rich Low_complexity Low_complexity 1 23 0 6 748 204 319 163 59 chr6 21484590 21484743 -128032294 - MER5A DNA MER1_type -1 188 20 6 748 1132 236 93 32 chr6 21486876 21487294 -128029743 - L1MB2 LINE L1 -207 5964 5458 6 748 1179 243 59 31 chr6 21487294 21487770 -128029267 + L1_Rod LINE L1 4963 5451 -396 6 748 980 111 0 6 chr6 21489177 21489358 -128027679 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 6 748 495 364 48 0 chr6 21489412 21489640 -128027397 - B4A SINE B4 -28 264 26 6 748 1184 73 0 6 chr6 21489681 21489846 -128027191 + (TTCTCC)n Simple_repeat Simple_repeat 6 169 0 6 748 1414 33 0 11 chr6 21489852 21490034 -128027003 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 748 267 54 0 0 chr6 21490034 21490071 -128026966 + (CTG)n Simple_repeat Simple_repeat 2 38 0 6 748 381 43 0 0 chr6 21490069 21490116 -128026921 + (TCC)n Simple_repeat Simple_repeat 3 49 0 6 748 2272 44 0 0 chr6 21490722 21490996 -128026041 - L1Md_T LINE L1 -1 6581 6308 6 748 21 36 0 0 chr6 21491617 21491645 -128025392 + AT_rich Low_complexity Low_complexity 1 28 0 6 748 268 231 231 0 chr6 21492578 21492708 -128024329 - MIR SINE MIR -26 236 77 6 748 636 197 64 21 chr6 21492737 21492787 -128024250 - B1_Mus2 SINE Alu -1 146 99 6 748 945 99 0 0 chr6 21492787 21492948 -128024089 + (TC)n Simple_repeat Simple_repeat 1 161 0 6 748 636 197 64 21 chr6 21492948 21493037 -128024000 - B1_Mus2 SINE Alu -49 98 1 6 748 417 95 0 0 chr6 21493794 21493857 -128023180 + (ATTG)n Simple_repeat Simple_repeat 4 66 0 6 748 342 0 0 0 chr6 21493857 21493894 -128023143 + (CTTA)n Simple_repeat Simple_repeat 4 41 0 6 748 28 0 0 0 chr6 21493939 21493967 -128023070 + AT_rich Low_complexity Low_complexity 1 28 0 6 748 7787 59 10 2 chr6 21494284 21495530 -128021507 - L1_Mus1 LINE L1 0 6567 5306 6 748 419 156 65 35 chr6 21495663 21495808 -128021229 - L1Md_F2 LINE L1 -3 6635 6439 6 93 2129 79 4 7 chr6 21495798 21496079 -128020958 + L1_Mus1 LINE L1 6164 6443 -124 6 749 6614 109 4 1 chr6 21496075 21497051 -128019986 - L1_Mm LINE L1 -586 5297 4319 6 749 4717 86 3 0 chr6 21497050 21497710 -128019327 + L1_Mm LINE L1 3649 4310 -1573 6 749 313 169 51 101 chr6 21498554 21498692 -128018345 + Lx9 LINE L1 7494 7624 -20 6 749 432 0 0 0 chr6 21498709 21498757 -128018280 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 749 981 291 44 39 chr6 21498773 21499134 -128017903 + Lx8 LINE L1 6175 6537 -936 6 749 242 116 0 23 chr6 21499360 21499404 -128017633 + (TTTTC)n Simple_repeat Simple_repeat 1 43 0 6 749 1152 61 0 7 chr6 21499506 21499654 -128017383 + B1_Mm SINE Alu 1 147 0 6 749 212 79 53 0 chr6 21499654 21499692 -128017345 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 7 749 417 315 92 15 chr6 21501988 21502040 -128014997 - MER2 DNA MER2_type -42 303 238 1 749 279 0 0 0 chr6 21502040 21502071 -128014966 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 749 306 0 0 0 chr6 21502071 21502104 -128014933 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 749 417 315 92 15 chr6 21502104 21502256 -128014781 - MER2 DNA MER2_type -108 237 83 1 749 226 380 25 0 chr6 21502342 21502421 -128014616 - MER2B DNA MER2_type -172 164 84 4 749 636 226 55 9 chr6 21502438 21502704 -128014333 - Lx4B LINE L1 -23 7035 6644 5 749 316 151 0 0 chr6 21502704 21502757 -128014280 + Lx3_Mus LINE L1 5824 5876 -1133 6 749 761 184 13 13 chr6 21502741 21502890 -128014147 + Lx2B LINE L1 6487 6635 -365 7 749 1048 105 0 12 chr6 21503053 21503217 -128013820 + L1Md_F2 LINE L1 6407 6568 -14 8 749 1488 226 75 0 chr6 21503286 21503605 -128013432 - Lx5 LINE L1 -3 7047 6705 9 749 2320 84 0 0 chr6 21503743 21504066 -128012971 - L1_Mm LINE L1 -2018 3865 3543 1 749 30 0 0 0 chr6 21504071 21504101 -128012936 + AT_rich Low_complexity Low_complexity 1 30 0 1 749 604 279 61 0 chr6 21506498 21506645 -128010392 + MER44D DNA MER2_type 2 157 -548 1 749 1781 33 0 0 chr6 21506691 21506906 -128010131 - L1_Mus1 LINE L1 0 6567 6353 1 749 649 276 98 78 chr6 21506918 21507139 -128009898 + MER44D DNA MER2_type 346 586 -119 1 749 1116 75 7 0 chr6 21507139 21507285 -128009752 + B1_Mm SINE Alu 1 147 0 1 749 649 276 98 78 chr6 21507285 21507334 -128009703 + MER44D DNA MER2_type 587 612 -93 1 749 218 53 79 0 chr6 21507334 21507372 -128009665 + (CAGAGA)n Simple_repeat Simple_repeat 6 46 0 1 749 649 276 98 78 chr6 21507372 21507446 -128009591 + MER44D DNA MER2_type 613 698 -7 1 749 486 0 0 0 chr6 21508010 21508064 -128008973 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 749 362 274 18 12 chr6 21508089 21508255 -128008782 + (TG)n Simple_repeat Simple_repeat 2 168 0 1 749 444 82 0 0 chr6 21510495 21510556 -128006481 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 749 248 131 82 0 chr6 21511120 21511181 -128005856 - Lx3C LINE L1 -11 6965 6900 1 749 329 287 214 16 chr6 21511355 21511546 -128005491 + B4 SINE B4 42 270 -22 1 749 405 129 0 0 chr6 21511557 21511627 -128005410 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 749 214 129 0 31 chr6 21512081 21512145 -128004892 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 2 749 1089 88 0 7 chr6 21512155 21512304 -128004733 - B1_Mus1 SINE Alu 0 148 1 2 749 205 269 78 97 chr6 21512839 21512942 -128004095 - MER5B DNA MER1_type -14 164 64 2 749 897 84 15 22 chr6 21513850 21513984 -128003053 - Lx2 LINE L1 -205 6792 6660 2 749 1345 128 46 0 chr6 21513985 21514204 -128002833 + Lx2 LINE L1 6769 6997 0 2 749 23 33 0 0 chr6 21514796 21514826 -128002211 + AT_rich Low_complexity Low_complexity 1 30 0 2 749 767 254 135 135 chr6 21517052 21517466 -127999571 - MTD LTR MaLR -5 414 1 2 749 797 188 7 0 chr6 21517647 21517785 -127999252 - Lx7 LINE L1 -692 7004 6866 2 749 522 328 62 56 chr6 21518035 21518355 -127998682 - MLT1B LTR MaLR -61 329 8 2 749 210 136 45 0 chr6 21518989 21519033 -127998004 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2 749 266 342 18 104 chr6 21519224 21519387 -127997650 - B4A SINE B4 -143 149 1 3 749 423 0 0 0 chr6 21519605 21519652 -127997385 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 749 1071 76 0 7 chr6 21520020 21520165 -127996872 + B1_Mm SINE Alu 4 147 0 3 749 378 57 0 0 chr6 21520640 21520693 -127996344 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 749 180 0 0 0 chr6 21520693 21520713 -127996324 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 749 24 77 0 0 chr6 21521353 21521405 -127995632 + AT_rich Low_complexity Low_complexity 1 52 0 3 749 237 65 0 0 chr6 21521912 21521943 -127995094 + (A)n Simple_repeat Simple_repeat 1 31 0 3 749 321 318 171 12 chr6 21523648 21523893 -127993144 + B4A SINE B4 1 284 -8 3 749 201 139 0 0 chr6 21523928 21523971 -127993066 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 749 25 0 0 0 chr6 21524035 21524060 -127992977 + AT_rich Low_complexity Low_complexity 1 25 0 3 749 22 0 0 0 chr6 21524452 21524474 -127992563 + AT_rich Low_complexity Low_complexity 1 22 0 4 749 247 211 50 100 chr6 21524542 21524642 -127992395 + MIR SINE MIR 88 182 -80 4 749 775 332 15 37 chr6 21524835 21525104 -127991933 - B4A SINE B4 -25 267 5 4 749 281 235 7 22 chr6 21526578 21526713 -127990324 + (TA)n Simple_repeat Simple_repeat 2 134 0 4 749 30 45 0 0 chr6 21526799 21526843 -127990194 + AT_rich Low_complexity Low_complexity 1 44 0 4 749 271 318 59 67 chr6 21528502 21528637 -127988400 + B4A SINE B4 63 196 -96 4 749 519 230 79 9 chr6 21528533 21528647 -127988390 + B1_Mur2 SINE Alu 6 127 -22 4 749 296 149 75 39 chr6 21528676 21528787 -127988250 - Lx7 LINE L1 -1219 5839 5731 4 749 300 37 18 36 chr6 21529080 21529136 -127987901 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 4 749 437 314 89 16 chr6 21529352 21529543 -127987494 - MLT1A LTR MaLR -24 350 146 4 749 3408 28 2 0 chr6 21529662 21530057 -127986980 - MTA_Mm LTR MaLR 0 396 1 5 749 232 301 14 0 chr6 21530208 21530281 -127986756 + GA-rich Low_complexity Low_complexity 1 74 0 5 749 482 225 249 12 chr6 21530668 21530829 -127986208 + B3 SINE B2 6 206 -10 5 749 200 111 22 0 chr6 21534558 21534603 -127982434 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 5 749 325 182 117 0 chr6 21534620 21534697 -127982340 + Lx6 LINE L1 7365 7450 -10 5 749 24 0 0 0 chr6 21535217 21535241 -127981796 + AT_rich Low_complexity Low_complexity 1 24 0 5 749 207 0 0 0 chr6 21535557 21535580 -127981457 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 749 708 312 115 42 chr6 21535820 21537038 -127979999 - L1M4 LINE L1 -390 5793 4448 5 749 5206 182 40 4 chr6 21537038 21538082 -127978955 - Lx3C LINE L1 -2 6974 5893 5 749 708 309 121 54 chr6 21538082 21538285 -127978752 - L1M4 LINE L1 -1699 4447 4257 5 749 311 309 112 16 chr6 21539548 21539673 -127977364 + B3 SINE B2 38 174 -42 5 749 336 183 0 0 chr6 21540071 21540131 -127976906 - L1_Rod LINE L1 -177 5670 5611 6 749 270 95 0 0 chr6 21542475 21542517 -127974520 + (TTG)n Simple_repeat Simple_repeat 2 43 0 6 749 23 54 0 0 chr6 21542844 21542881 -127974156 + AT_rich Low_complexity Low_complexity 1 37 0 6 749 247 326 23 0 chr6 21546495 21546581 -127970456 + B3A SINE B2 2 89 -109 6 749 269 289 39 47 chr6 21546773 21546900 -127970137 + B3 SINE B2 89 214 -2 6 749 22 0 0 0 chr6 21546995 21547017 -127970020 + AT_rich Low_complexity Low_complexity 1 22 0 6 749 38 0 0 0 chr6 21547398 21547436 -127969601 + AT_rich Low_complexity Low_complexity 1 38 0 6 749 618 314 102 16 chr6 21549608 21549864 -127967173 - B4A SINE B4 -14 278 1 6 749 22 0 0 0 chr6 21551221 21551243 -127965794 + AT_rich Low_complexity Low_complexity 1 22 0 6 749 33 43 0 0 chr6 21551422 21551469 -127965568 + AT_rich Low_complexity Low_complexity 1 47 0 6 749 1199 284 127 21 chr6 21553695 21554167 -127962870 - Lx8 LINE L1 -147 7326 6805 6 749 700 175 5 38 chr6 21554185 21554369 -127962668 + (TA)n Simple_repeat Simple_repeat 2 179 0 7 749 252 100 0 0 chr6 21554682 21554722 -127962315 + (TTG)n Simple_repeat Simple_repeat 3 42 0 7 749 1334 281 35 3 chr6 21554733 21555079 -127961958 - RMER15 LTR ERVL 0 575 219 7 749 496 304 0 37 chr6 21555217 21555381 -127961656 + RSINE1 SINE B4 4 161 -4 7 749 314 206 44 0 chr6 21555489 21555557 -127961480 + RMER15 LTR ERVL 61 131 -444 7 749 21 0 0 0 chr6 21556080 21556101 -127960936 + AT_rich Low_complexity Low_complexity 1 21 0 7 749 1808 297 55 16 chr6 21556138 21556780 -127960257 - Lx6 LINE L1 -607 6853 6187 7 749 1774 214 54 3 chr6 21556773 21557125 -127959912 + Lx6 LINE L1 6816 7185 -275 7 749 454 294 0 0 chr6 21557125 21557217 -127959820 + B3A SINE B2 77 168 -30 7 749 319 192 194 39 chr6 21557276 21557379 -127959658 + PB1D7 SINE Alu 2 120 0 7 749 926 234 104 8 chr6 21557466 21557716 -127959321 + Lx6 LINE L1 7187 7460 0 7 749 787 174 13 7 chr6 21558288 21558438 -127958599 + Lx9 LINE L1 7313 7463 -181 8 749 32 26 0 0 chr6 21558613 21558652 -127958385 + AT_rich Low_complexity Low_complexity 1 39 0 8 749 244 59 18 89 chr6 21558946 21558965 -127958072 + A-rich Low_complexity Low_complexity 2 17 0 8 749 1192 34 0 13 chr6 21558965 21559114 -127957923 + B1_Mus2 SINE Alu 1 147 0 8 749 244 59 18 89 chr6 21559114 21559150 -127957887 + A-rich Low_complexity Low_complexity 18 53 0 8 749 195 378 0 12 chr6 21559948 21560031 -127957006 - MIRm SINE MIR -2 274 193 8 749 219 114 0 0 chr6 21560192 21560227 -127956810 + (T)n Simple_repeat Simple_repeat 1 35 0 8 749 193 365 129 25 chr6 21560294 21560457 -127956580 - L2 LINE L2 -383 3036 2857 8 749 318 200 42 28 chr6 21560510 21560582 -127956455 + U6 snRNA snRNA 1 73 -34 8 749 9750 82 91 11 chr6 21561591 21563707 -127953330 - Lx3_Mus LINE L1 0 7009 4741 8 749 371 327 19 0 chr6 21563760 21563867 -127953170 + B3A SINE B2 4 112 -86 9 749 218 95 24 0 chr6 21563922 21563964 -127953073 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 749 360 297 43 25 chr6 21565867 21566029 -127951008 - Tigger7 DNA MER2_type -12 2479 2315 9 749 4684 236 49 26 chr6 21566048 21567258 -127949779 + Lx7 LINE L1 6460 7696 0 9 749 353 304 0 8 chr6 21568571 21568697 -127948340 + Lx6 LINE L1 7309 7433 -27 9 749 332 213 18 36 chr6 21568815 21568927 -127948110 - L1_Mur1 LINE L1 -1560 4326 4217 9 749 7119 127 29 1 chr6 21568938 21570561 -127946476 - Lx LINE L1 -1 6653 4973 9 749 1235 267 61 17 chr6 21570590 21571062 -127945975 - L1_Rod LINE L1 -1667 4180 3688 9 749 346 347 76 8 chr6 21571086 21571324 -127945713 + Lx9 LINE L1 7215 7468 -176 9 749 199 260 71 58 chr6 21572384 21572483 -127944554 + L2a LINE L2 2998 3098 -328 9 749 1163 306 63 7 chr6 21572750 21573177 -127943860 - Lx8 LINE L1 -207 7266 6816 1 749 300 316 13 93 chr6 21573195 21573345 -127943692 + Lx8 LINE L1 6632 6769 -704 1 749 329 330 68 0 chr6 21574084 21574187 -127942850 - PB1D7 SINE Alu -6 114 5 1 749 2328 208 111 5 chr6 21575658 21576272 -127940765 - Lx9 LINE L1 -428 7216 6538 1 749 608 305 0 0 chr6 21576309 21576486 -127940551 + Lx8 LINE L1 6315 6491 -982 1 749 481 338 82 74 chr6 21576484 21576678 -127940359 + Lx9 LINE L1 6954 7142 -502 1 749 984 110 14 7 chr6 21576678 21576824 -127940213 + B1_Mus1 SINE Alu 2 148 0 1 749 481 338 82 74 chr6 21576824 21577226 -127939811 + Lx9 LINE L1 7143 7555 -89 1 749 258 105 0 0 chr6 21579012 21579050 -127937987 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 1 749 32 26 0 0 chr6 21579054 21579093 -127937944 + AT_rich Low_complexity Low_complexity 1 39 0 1 749 27 81 0 0 chr6 21579126 21579188 -127937849 + AT_rich Low_complexity Low_complexity 1 62 0 1 749 4218 51 4 2 chr6 21579389 21579923 -127937114 - L1_Mus1 LINE L1 0 6567 6033 1 749 1172 62 0 0 chr6 21581626 21581772 -127935265 - B1_Mm SINE Alu 0 147 2 1 749 21 0 0 0 chr6 21582290 21582311 -127934726 + AT_rich Low_complexity Low_complexity 1 21 0 1 749 22 35 0 0 chr6 21583306 21583335 -127933702 + AT_rich Low_complexity Low_complexity 1 29 0 1 749 230 56 0 27 chr6 21583422 21583459 -127933578 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1 749 939 177 116 0 chr6 21583781 21583979 -127933058 - URR1A DNA MER1_type 0 226 6 1 749 685 169 176 0 chr6 21584065 21584213 -127932824 + Lx3C LINE L1 6789 6962 -14 1 749 292 0 45 23 chr6 21584214 21584258 -127932779 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 1 749 950 97 7 0 chr6 21584578 21584722 -127932315 + (TC)n Simple_repeat Simple_repeat 2 146 0 1 749 279 54 0 0 chr6 21584725 21584762 -127932275 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 749 217 232 159 0 chr6 21584885 21584954 -127932083 + L2a LINE L2 3343 3422 -4 1 749 213 39 0 0 chr6 21585677 21585703 -127931334 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 1 749 234 314 0 46 chr6 21585843 21585973 -127931064 + T-rich Low_complexity Low_complexity 6 129 0 1 749 207 0 0 0 chr6 21586260 21586283 -127930754 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 1 749 318 263 17 26 chr6 21586893 21587010 -127930027 + Lx7 LINE L1 7562 7677 -19 1 749 22 56 0 0 chr6 21587046 21587082 -127929955 + AT_rich Low_complexity Low_complexity 1 36 0 1 749 36 53 0 0 chr6 21587252 21587309 -127929728 + AT_rich Low_complexity Low_complexity 1 57 0 1 749 26 30 0 0 chr6 21587663 21587696 -127929341 + AT_rich Low_complexity Low_complexity 1 33 0 1 749 235 345 32 40 chr6 21587794 21587918 -127929119 - MIR3 SINE MIR -31 177 55 1 749 363 300 88 40 chr6 21588384 21588546 -127928491 + B4A SINE B4 2 175 -49 1 749 223 283 0 0 chr6 21588888 21588941 -127928096 + B3A SINE B2 25 77 -121 1 749 1084 226 182 23 chr6 21589014 21589342 -127927695 - MT2A LTR ERVL -138 395 1 1 749 330 268 68 38 chr6 21589353 21589485 -127927552 + B3 SINE B2 81 216 0 1 749 23 0 0 0 chr6 21590211 21590234 -127926803 + AT_rich Low_complexity Low_complexity 1 23 0 1 749 237 320 127 109 chr6 21590665 21590886 -127926151 + B4A SINE B4 1 225 -67 1 749 270 0 0 0 chr6 21590948 21590978 -127926059 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 749 207 0 0 0 chr6 21591950 21591973 -127925064 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 1 749 379 309 119 72 chr6 21591975 21592167 -127924870 - MTEa LTR MaLR 0 379 183 1 749 954 50 0 0 chr6 21592167 21592287 -127924750 + (TTTTC)n Simple_repeat Simple_repeat 3 122 0 1 749 379 309 119 72 chr6 21592287 21592456 -127924581 - MTEa LTR MaLR -197 182 1 1 749 314 108 26 26 chr6 21592483 21592559 -127924478 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 749 617 252 28 0 chr6 21593263 21593292 -127923745 - B1_Mus2 SINE Alu 0 147 115 1 749 300 27 0 0 chr6 21593292 21593329 -127923708 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 749 617 252 28 0 chr6 21593329 21593442 -127923595 - B1_Mus2 SINE Alu -33 114 2 1 749 774 283 164 11 chr6 21593534 21594155 -127922882 + L1MA6 LINE L1 5341 6056 -244 1 749 1941 117 15 60 chr6 21596183 21596248 -127920789 - ORR1A3 LTR MaLR -5 321 252 1 749 572 99 0 38 chr6 21596248 21596353 -127920684 - L1_Mus3 LINE L1 0 6638 6538 1 749 1941 117 15 60 chr6 21596353 21596623 -127920414 - ORR1A3 LTR MaLR -75 251 2 1 749 969 288 36 36 chr6 21596685 21597042 -127919995 + ORR1E LTR MaLR 1 357 -2 1 749 408 139 0 0 chr6 21598404 21598483 -127918554 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 749 3748 125 73 2 chr6 21598789 21599388 -127917649 + Lx LINE L1 6005 6646 -8 1 749 1127 231 16 8 chr6 21599560 21599813 -127917224 + Lx6 LINE L1 7190 7444 -16 1 749 629 286 199 26 chr6 21599867 21600169 -127916868 + MTD LTR MaLR 6 359 -60 1 749 357 133 0 0 chr6 21600198 21600273 -127916764 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 1 749 279 173 235 0 chr6 21600480 21600561 -127916476 - Lx9 LINE L1 -12 7632 7533 1 749 300 27 0 0 chr6 21600590 21600627 -127916410 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 749 494 305 7 0 chr6 21600680 21600834 -127916203 - Lx9 LINE L1 -271 7373 7219 1 749 205 191 0 0 chr6 21600991 21601033 -127916004 + A-rich Low_complexity Low_complexity 1 42 0 1 749 199 87 43 21 chr6 21601430 21601477 -127915560 + (CACAC)n Simple_repeat Simple_repeat 3 50 0 1 749 493 333 46 10 chr6 21601582 21601776 -127915261 + MER34 LTR ERV1 110 310 -232 1 749 776 301 38 41 chr6 21601861 21602128 -127914909 + B4 SINE B4 9 274 -18 1 749 679 87 40 0 chr6 21602133 21602259 -127914778 + (CA)n Simple_repeat Simple_repeat 1 131 0 1 749 180 234 0 0 chr6 21603363 21603410 -127913627 + GA-rich Low_complexity Low_complexity 4 50 0 1 749 180 0 0 0 chr6 21604048 21604068 -127912969 + (CAAT)n Simple_repeat Simple_repeat 3 22 0 1 749 1125 285 11 4 chr6 21608440 21608715 -127908322 - B4 SINE B4 -10 282 6 1 749 412 343 43 47 chr6 21609418 21609629 -127907408 - B3 SINE B2 0 216 7 1 749 465 19 0 0 chr6 21610479 21610533 -127906504 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 1 749 228 324 195 18 chr6 21610533 21610646 -127906391 + MLT1A LTR MaLR 194 326 -48 1 749 286 369 114 15 chr6 21610775 21610976 -127906061 + Tigger5 DNA MER2_type 22 242 -2164 1 749 233 382 85 8 chr6 21611334 21611569 -127905468 + L2 LINE L2 2671 2923 -496 1 749 1337 268 52 15 chr6 21611953 21612273 -127904764 + RLTR20B3 LTR ERVK 145 472 -105 1 749 738 50 0 0 chr6 21612273 21612372 -127904665 + (TG)n Simple_repeat Simple_repeat 2 100 0 1 749 1337 268 52 15 chr6 21612372 21612457 -127904580 + RLTR20B3 LTR ERVK 473 564 -13 1 749 1219 250 151 0 chr6 21614152 21614516 -127902521 + MTD LTR MaLR 1 419 0 1 749 722 41 21 0 chr6 21615415 21615512 -127901525 + (TTTC)n Simple_repeat Simple_repeat 3 101 0 1 749 1202 67 0 6 chr6 21616954 21617119 -127899918 - L1Md_A LINE L1 0 6582 6419 1 749 781 42 0 0 chr6 21617119 21617215 -127899822 + L1Md_F2 LINE L1 6294 6389 -193 1 749 232 197 0 16 chr6 21618339 21618401 -127898636 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 749 261 0 0 0 chr6 21620242 21620271 -127896766 + (A)n Simple_repeat Simple_repeat 1 29 0 1 749 360 163 0 0 chr6 21621462 21621548 -127895489 + GA-rich Low_complexity Low_complexity 2 87 0 1 749 975 109 0 0 chr6 21621549 21621723 -127895314 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 1 749 229 250 88 0 chr6 21622343 21622423 -127894614 + L1MB1 LINE L1 6081 6167 -1 1 749 360 0 0 0 chr6 21625094 21625134 -127891903 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 749 527 79 0 22 chr6 21625135 21625226 -127891811 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 1 749 198 330 85 32 chr6 21625530 21625624 -127891413 + L2b LINE L2 3237 3335 -40 1 749 283 244 103 11 chr6 21625944 21626031 -127891006 + B1F SINE Alu 55 149 0 1 93 5563 153 70 10 chr6 21626394 21627383 -127889654 - Lx4A LINE L1 0 7058 6011 1 750 21 0 0 0 chr6 21628086 21628107 -127888930 + AT_rich Low_complexity Low_complexity 1 21 0 1 750 435 41 13 40 chr6 21628880 21628956 -127888081 + (TTTTG)n Simple_repeat Simple_repeat 4 77 0 1 750 646 304 154 12 chr6 21629127 21629373 -127887664 - B4 SINE B4 -6 286 6 1 750 21 0 0 0 chr6 21629502 21629523 -127887514 + AT_rich Low_complexity Low_complexity 1 21 0 1 750 321 382 27 46 chr6 21630551 21630814 -127886223 + MIR SINE MIR 2 259 -3 1 750 1560 77 0 0 chr6 21631171 21631378 -127885659 + L1_Mus1 LINE L1 6361 6567 0 1 750 22 0 0 0 chr6 21631378 21631400 -127885637 + AT_rich Low_complexity Low_complexity 1 22 0 1 750 349 284 62 12 chr6 21632903 21633014 -127884023 + B1F SINE Alu 14 128 -21 1 750 363 44 0 0 chr6 21633020 21633065 -127883972 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 1 750 202 290 0 0 chr6 21633442 21633511 -127883526 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 750 987 149 0 0 chr6 21635329 21635497 -127881540 + (GAA)n Simple_repeat Simple_repeat 2 169 0 1 750 302 64 21 0 chr6 21635500 21635532 -127881505 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 1 750 1405 34 6 6 chr6 21635532 21635712 -127881325 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 750 302 64 21 0 chr6 21635712 21635726 -127881311 + (GGAA)n Simple_repeat Simple_repeat 1 15 0 1 750 311 323 15 30 chr6 21635745 21635876 -127881161 + Lx8 LINE L1 7052 7180 -293 1 750 30 27 0 0 chr6 21636392 21636429 -127880608 + AT_rich Low_complexity Low_complexity 1 37 0 1 750 328 205 21 74 chr6 21637346 21637441 -127879596 - MLT1A0 LTR MaLR -5 403 271 1 750 321 276 49 62 chr6 21637475 21637497 -127879540 - CYRA11_Mm Unknown Y-chromosome -284 333 249 1 750 611 193 0 32 chr6 21637497 21637620 -127879417 + URR1B DNA MER1_type 86 204 -21 1 750 321 276 49 62 chr6 21637620 21637637 -127879400 - CYRA11_Mm Unknown Y-chromosome -284 248 174 1 750 386 264 41 27 chr6 21637770 21637897 -127879140 + B1F2 SINE Alu 19 149 0 2 750 396 305 57 60 chr6 21637866 21638180 -127878857 - Arthur1B DNA Tip100 -133 1092 780 2 750 492 363 121 42 chr6 21638257 21638752 -127878285 - Arthur1B DNA Tip100 -563 662 129 2 750 1192 273 47 33 chr6 21638746 21639110 -127877927 + MTE2b LTR MaLR 9 377 -2 2 750 1204 61 0 0 chr6 21639121 21639269 -127877768 + B1_Mus1 SINE Alu 1 148 0 2 750 201 171 0 0 chr6 21639269 21639304 -127877733 + A-rich Low_complexity Low_complexity 1 35 0 2 750 528 30 0 0 chr6 21639720 21639786 -127877251 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 750 4720 198 62 12 chr6 21640458 21641469 -127875568 + RMER1B Other Other 5 1066 0 2 750 234 215 228 0 chr6 21641836 21641915 -127875122 + LTR48 LTR ERV1 46 142 -645 2 750 348 254 73 0 chr6 21641968 21642078 -127874959 + Lx7 LINE L1 7564 7681 -15 2 750 270 284 171 8 chr6 21642299 21642416 -127874621 - MER45B DNA Tip100 -899 141 6 2 750 903 215 48 10 chr6 21644484 21644691 -127872346 + B3 SINE B2 2 216 0 2 750 27 73 0 0 chr6 21644947 21645002 -127872035 + AT_rich Low_complexity Low_complexity 1 55 0 2 750 199 306 41 14 chr6 21645281 21645354 -127871683 + MIR SINE MIR 101 175 -87 2 750 23 33 0 0 chr6 21647531 21647561 -127869476 + AT_rich Low_complexity Low_complexity 1 30 0 2 750 23 0 0 0 chr6 21648751 21648774 -127868263 + AT_rich Low_complexity Low_complexity 1 23 0 2 750 3576 132 62 2 chr6 21649024 21649591 -127867446 - MT2B LTR ERVL 0 601 1 2 750 1141 252 98 19 chr6 21649768 21650084 -127866953 + MTD LTR MaLR 1 341 -78 2 750 241 47 23 23 chr6 21651557 21651601 -127865436 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 750 377 193 36 12 chr6 21651765 21651849 -127865188 - URR1B DNA MER1_type -18 207 122 2 750 237 308 179 60 chr6 21651902 21652137 -127864900 + LTR33A_ LTR ERVL 70 332 -199 2 750 271 319 171 57 chr6 21652967 21653160 -127863877 + B4 SINE B4 1 215 -77 2 750 6082 60 1 2 chr6 21653160 21654157 -127862880 - L1Md_F2 LINE L1 -525 6057 5063 2 750 3716 65 18 6 chr6 21654157 21654650 -127862387 + L1Md_F2 LINE L1 6082 6580 -2 2 750 180 219 0 0 chr6 21654748 21654789 -127862248 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 750 385 336 15 30 chr6 21654887 21655019 -127862018 + RSINE1 SINE B4 5 134 -31 2 750 7549 71 9 11 chr6 21655153 21656271 -127860766 + L1_Mus3 LINE L1 5521 6636 -2 2 750 903 87 0 0 chr6 21656701 21656827 -127860210 + (GAAAA)n Simple_repeat Simple_repeat 2 127 0 2 750 540 322 58 0 chr6 21658206 21658377 -127858660 - RMER30 DNA MER1_type -17 185 5 2 750 189 74 0 0 chr6 21660479 21660506 -127856531 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 750 210 71 0 0 chr6 21660533 21660561 -127856476 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 750 1137 85 0 0 chr6 21660561 21660736 -127856301 + (GA)n Simple_repeat Simple_repeat 2 177 0 2 750 487 330 99 10 chr6 21661717 21661919 -127855118 - RCHARR1 DNA MER1_type -724 250 31 2 750 231 375 0 0 chr6 21662441 21662521 -127854516 + ID4 SINE ID 3 82 -1 2 750 22 35 0 0 chr6 21663790 21663819 -127853218 + AT_rich Low_complexity Low_complexity 1 29 0 2 750 272 327 59 24 chr6 21664548 21664717 -127852320 - MLT1I LTR MaLR -229 182 8 2 750 189 74 0 0 chr6 21664930 21664957 -127852080 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2 750 238 388 37 42 chr6 21665115 21665330 -127851707 - MIR SINE MIR -9 253 40 2 750 2477 102 3 24 chr6 21666401 21666784 -127850253 - L1_Mus4 LINE L1 -1 6635 6261 2 750 22 35 0 0 chr6 21667208 21667237 -127849800 + AT_rich Low_complexity Low_complexity 1 29 0 2 750 408 266 22 28 chr6 21668326 21668504 -127848533 + (TA)n Simple_repeat Simple_repeat 2 178 0 2 750 396 0 0 0 chr6 21670151 21670195 -127846842 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 750 234 0 0 0 chr6 21670203 21670229 -127846808 + (A)n Simple_repeat Simple_repeat 1 26 0 2 750 328 341 21 56 chr6 21670267 21670410 -127846627 + B1F SINE Alu 10 147 -2 2 750 218 317 139 37 chr6 21670426 21670534 -127846503 + PB1 SINE Alu 9 127 0 2 750 634 252 8 0 chr6 21670536 21670659 -127846378 + B3A SINE B2 3 126 -72 2 750 237 316 12 25 chr6 21670776 21670857 -127846180 + ID4_ SINE ID 3 82 -1 2 750 370 256 69 98 chr6 21671859 21672032 -127845005 + HAL1-3A_ME LINE L1 2288 2455 -403 2 750 22 35 0 0 chr6 21674492 21674521 -127842516 + AT_rich Low_complexity Low_complexity 1 29 0 2 750 488 322 59 71 chr6 21676392 21676646 -127840391 + B4A SINE B4 1 251 -41 2 750 21 0 0 0 chr6 21677056 21677077 -127839960 + AT_rich Low_complexity Low_complexity 1 21 0 2 750 181 269 96 0 chr6 21679109 21679161 -127837876 + L2a LINE L2 3364 3420 -6 2 750 924 103 29 6 chr6 21680203 21680378 -127836659 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 2 750 28 0 0 0 chr6 21680416 21680444 -127836593 + AT_rich Low_complexity Low_complexity 1 28 0 2 750 976 164 174 59 chr6 21681623 21681928 -127835109 + Lx7 LINE L1 7357 7696 0 2 750 26 30 0 0 chr6 21682686 21682719 -127834318 + AT_rich Low_complexity Low_complexity 1 33 0 2 750 3057 110 14 21 chr6 21682719 21683201 -127833836 - Lx4A LINE L1 0 7058 6580 2 750 1258 189 29 40 chr6 21683483 21683759 -127833278 + RLTR46 LTR ERVK 43 315 -5 2 750 3419 70 0 0 chr6 21685084 21685529 -127831508 + L1Md_F2 LINE L1 6138 6582 0 2 750 1078 110 0 0 chr6 21686137 21686283 -127830754 + B1_Mus1 SINE Alu 2 147 -1 2 750 3294 183 38 67 chr6 21686657 21687394 -127829643 + RMER6D LTR ERVK 1 716 -4 2 750 2614 278 56 34 chr6 21687428 21688102 -127828935 - Lx7 LINE L1 -584 7112 6427 2 750 223 96 39 0 chr6 21688102 21688154 -127828883 + (TATAG)n Simple_repeat Simple_repeat 2 55 0 2 750 2614 278 56 34 chr6 21688154 21688459 -127828578 - Lx7 LINE L1 -1270 6426 6111 2 750 855 20 0 0 chr6 21689281 21689382 -127827655 + (TC)n Simple_repeat Simple_repeat 1 101 0 2 750 234 0 0 0 chr6 21689382 21689407 -127827630 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 750 711 252 83 110 chr6 21690713 21691272 -127825765 - RMER2 LTR ERV1 0 567 3 2 750 180 369 28 28 chr6 21691490 21691596 -127825441 - MIRm SINE MIR 0 276 171 2 750 497 339 87 48 chr6 21691893 21692354 -127824683 - L2 LINE L2 -445 2974 2496 2 750 205 314 17 17 chr6 21693842 21693962 -127823075 + (CA)n Simple_repeat Simple_repeat 2 121 0 2 750 1093 76 21 0 chr6 21694110 21694254 -127822783 - B1_Mus1 SINE Alu 0 148 2 2 750 282 289 24 0 chr6 21694345 21694428 -127822609 + GA-rich Low_complexity Low_complexity 4 88 0 2 750 348 308 110 40 chr6 21694537 21694865 -127822172 - L2 LINE L2 -930 2489 2139 2 750 738 324 67 86 chr6 21694973 21695575 -127821462 + MLT1F1 LTR MaLR 7 560 0 2 750 323 239 0 0 chr6 21696871 21696938 -127820099 + Lx8 LINE L1 6734 6800 -673 2 750 349 245 61 0 chr6 21696940 21697038 -127819999 + Lx8 LINE L1 6734 6837 -636 2 750 426 165 0 0 chr6 21697110 21697189 -127819848 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 750 7207 94 7 1 chr6 21698678 21699712 -127817325 - L1_Mus4 LINE L1 -10 6626 5587 2 750 4015 140 14 9 chr6 21699711 21700434 -127816603 + Lx2B LINE L1 4974 5698 -1278 2 750 366 254 40 44 chr6 21701773 21701884 -127815153 + FAM SINE Alu 146 235 -76 2 750 3605 163 9 225 chr6 21701894 21703254 -127813783 + L1_Mur1 LINE L1 4670 5735 -151 2 750 3512 198 81 23 chr6 21703246 21704173 -127812864 + Lx2B LINE L1 6010 6990 -10 2 750 234 0 0 0 chr6 21704563 21704589 -127812448 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 750 8875 111 9 7 chr6 21704847 21706384 -127810653 + Lx3A LINE L1 5444 6981 0 2 750 1010 149 5 26 chr6 21706405 21706598 -127810439 - Lx4A LINE L1 0 7058 6870 2 750 1036 179 119 25 chr6 21706603 21706838 -127810199 - RMER10A LTR ERVL -182 260 4 2 750 907 270 39 67 chr6 21706843 21707437 -127809600 + L1MA4 LINE L1 5368 5936 -361 2 750 530 126 0 18 chr6 21707496 21707609 -127809428 + (TCTCTG)n Simple_repeat Simple_repeat 6 116 0 2 750 732 195 0 0 chr6 21707749 21707898 -127809139 + (TA)n Simple_repeat Simple_repeat 2 150 0 2 750 29 0 0 0 chr6 21708046 21708075 -127808962 + AT_rich Low_complexity Low_complexity 1 29 0 2 750 264 301 57 21 chr6 21708277 21708446 -127808591 + MLT1G LTR MaLR 53 209 -382 2 750 309 236 36 45 chr6 21709038 21709149 -127807888 - L1MA10 LINE L1 -50 6284 6175 2 750 394 198 26 51 chr6 21709398 21709515 -127807522 - L1ME1 LINE L1 -336 5843 5730 2 750 489 324 60 18 chr6 21709596 21709932 -127807105 - L1ME1 LINE L1 -715 5729 5380 2 750 375 202 0 0 chr6 21710342 21710421 -127806616 + A-rich Low_complexity Low_complexity 1 79 0 2 750 1359 335 57 34 chr6 21710429 21711283 -127805754 - Lx9 LINE L1 -291 7353 6480 2 750 399 269 60 117 chr6 21711644 21712128 -127804909 - L1ME1 LINE L1 -1067 5073 4616 2 750 1101 220 138 22 chr6 21712562 21712873 -127804164 - MTB LTR MaLR -53 347 1 2 750 2355 72 3 0 chr6 21713167 21713472 -127803565 - L1_Mus1 LINE L1 -3 6564 6259 2 750 265 130 22 0 chr6 21713701 21713747 -127803290 - L1MEc LINE L1 -5124 1276 1230 2 750 431 317 106 25 chr6 21713787 21714298 -127802739 - L1MEc LINE L1 -5350 1050 499 2 750 426 79 0 0 chr6 21714341 21714404 -127802633 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 750 1017 178 5 11 chr6 21714530 21714717 -127802320 + URR1A DNA MER1_type 41 226 0 2 750 411 315 65 52 chr6 21714719 21714967 -127802070 - L1MEc LINE L1 -6121 279 29 2 750 203 283 83 0 chr6 21715237 21715297 -127801740 + MIRb SINE MIR 20 84 -184 2 750 236 250 32 48 chr6 21716319 21716382 -127800655 + MLT1J LTR MaLR 67 128 -384 2 750 404 19 19 0 chr6 21716546 21716599 -127800438 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2 750 1183 29 0 0 chr6 21716599 21716736 -127800301 - B1_Mus2 SINE Alu -10 137 1 2 750 270 0 0 0 chr6 21716744 21716774 -127800263 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 750 1160 62 0 0 chr6 21716774 21716911 -127800126 - B1_Mus2 SINE Alu -8 139 3 3 750 348 64 0 0 chr6 21717234 21717281 -127799756 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 750 279 388 62 0 chr6 21718111 21718320 -127798717 + L2 LINE L2 2367 2588 -831 3 750 2009 89 17 7 chr6 21718372 21718666 -127798371 - L1_Mus1 LINE L1 -1 6566 6270 3 750 180 0 0 0 chr6 21719072 21719092 -127797945 + (CTGTG)n Simple_repeat Simple_repeat 5 24 0 3 750 389 270 0 0 chr6 21720022 21720111 -127796926 - PB1 SINE Alu -16 111 23 3 750 396 0 0 0 chr6 21720580 21720624 -127796413 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 750 455 238 14 7 chr6 21723176 21723319 -127793718 - RCHARR1 DNA MER1_type -5 969 826 3 750 463 322 47 15 chr6 21723319 21723493 -127793544 + B4A SINE B4 1 177 -115 3 750 210 363 18 89 chr6 21723413 21723525 -127793512 + PB1D7 SINE Alu 15 118 -2 3 750 642 120 0 0 chr6 21723610 21723735 -127793302 + (CA)n Simple_repeat Simple_repeat 2 126 0 3 750 1734 267 67 94 chr6 21723758 21724638 -127792399 - RCHARR1 DNA MER1_type -118 856 1 3 750 559 317 28 33 chr6 21724649 21724864 -127792173 - MER58A DNA MER1_type -5 219 6 3 750 243 240 0 0 chr6 21724886 21724936 -127792101 + (TTG)n Simple_repeat Simple_repeat 2 51 0 3 750 1113 324 36 36 chr6 21725384 21725910 -127791127 + Lx9 LINE L1 6797 7470 -174 3 750 5783 113 68 0 chr6 21725971 21726793 -127790244 + Lx2 LINE L1 6119 6996 -1 3 750 1092 78 0 0 chr6 21727344 21727473 -127789564 + B1_Mus1 SINE Alu 1 129 -19 3 750 3359 30 0 5 chr6 21727473 21727848 -127789189 + L1Md_F2 LINE L1 6210 6582 0 3 750 192 40 0 0 chr6 21727895 21727920 -127789117 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3 750 617 64 0 0 chr6 21728081 21728159 -127788878 + B2_Mm2 SINE B2 3 80 -115 3 750 1262 62 0 0 chr6 21728969 21729114 -127787923 + B1_Mm SINE Alu 1 145 -2 3 750 397 226 36 0 chr6 21729309 21729393 -127787644 + L1MA8 LINE L1 6020 6106 -185 3 750 872 316 184 28 chr6 21729887 21730656 -127786381 + L1M4 LINE L1 79 967 -5575 3 750 219 238 0 54 chr6 21730706 21730817 -127786220 + GA-rich Low_complexity Low_complexity 4 108 0 3 750 1004 194 38 19 chr6 21730886 21731096 -127785941 - URR1B DNA MER1_type 0 225 12 3 750 707 294 14 45 chr6 21731168 21731389 -127785648 - ID_B1 SINE B4 -4 220 7 3 750 720 167 40 4 chr6 21731615 21731759 -127785278 - B1_Mur3 SINE Alu -5 145 1 3 750 919 174 14 0 chr6 21732204 21732348 -127784689 + B1_Mus1 SINE Alu 3 148 0 3 750 318 106 0 0 chr6 21732518 21732565 -127784472 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 750 257 322 74 51 chr6 21732631 21732847 -127784190 + L4 LINE RTE 1709 1929 -100 3 750 3018 95 35 41 chr6 21733278 21733738 -127783299 + Lx LINE L1 6198 6654 0 3 750 204 125 0 0 chr6 21734045 21734077 -127782960 + (A)n Simple_repeat Simple_repeat 1 32 0 3 750 195 381 127 0 chr6 21735323 21735457 -127781580 + MIR SINE MIR 55 205 -57 3 750 203 167 0 0 chr6 21735630 21735672 -127781365 + T-rich Low_complexity Low_complexity 6 47 0 3 750 1441 97 16 0 chr6 21736926 21737112 -127779925 - B2_Mm2 SINE B2 -6 189 1 3 750 230 19 135 0 chr6 21737148 21737200 -127779837 + A-rich Low_complexity Low_complexity 2 60 0 3 750 1144 102 0 0 chr6 21738023 21738180 -127778857 - B2_Mm2 SINE B2 -36 159 3 3 750 523 307 75 8 chr6 21738846 21739086 -127777951 + MER31B LTR ERV1 78 333 -133 3 750 369 93 0 0 chr6 21739191 21739245 -127777792 + (GGA)n Simple_repeat Simple_repeat 1 54 0 3 750 1377 178 0 26 chr6 21739263 21739494 -127777543 - URR1A DNA MER1_type 0 226 2 3 750 3479 41 8 0 chr6 21739660 21740053 -127776984 + MTA_Mm LTR MaLR 1 396 0 3 750 234 316 62 76 chr6 21740300 21740444 -127776593 - Charlie4z DNA MER1_type -24 143 2 3 750 240 111 0 0 chr6 21740487 21740523 -127776514 + (TCTCCC)n Simple_repeat Simple_repeat 6 41 0 3 750 360 59 0 0 chr6 21740528 21740579 -127776458 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 3 750 424 364 48 13 chr6 21741461 21741689 -127775348 - L3 LINE CR1 -27 4462 4227 3 750 26 30 0 0 chr6 21742265 21742298 -127774739 + AT_rich Low_complexity Low_complexity 1 33 0 3 750 261 0 0 0 chr6 21742506 21742535 -127774502 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 750 836 57 0 0 chr6 21742661 21742766 -127774271 - L1Md_F2 LINE L1 -371 6211 6107 3 750 2707 71 3 25 chr6 21742766 21743128 -127773909 + L1Md_F2 LINE L1 6219 6572 -10 3 750 472 305 198 29 chr6 21743433 21743800 -127773237 + MLT1C LTR MaLR 2 430 -37 3 750 580 300 20 13 chr6 21743973 21744125 -127772912 + B4A SINE B4 7 159 -133 3 750 1074 58 73 0 chr6 21744372 21744509 -127772528 - B1_Mus2 SINE Alu 0 147 1 3 750 580 58 115 0 chr6 21744529 21744616 -127772421 - B1_Mm SINE Alu -50 97 1 3 750 185 0 40 0 chr6 21744711 21744736 -127772301 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 750 665 276 16 87 chr6 21744747 21744930 -127772107 - B3A SINE B2 -27 171 2 3 750 263 366 0 0 chr6 21747220 21747313 -127769724 - Tigger15a DNA TcMar -9 706 614 3 750 207 0 0 0 chr6 21747550 21747573 -127769464 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 750 1753 28 1 9 chr6 21747573 21747791 -127769246 - L1Md_F2 LINE L1 -601 5981 5771 3 750 1016 286 77 16 chr6 21748031 21748397 -127768640 + MLT1B LTR MaLR 1 388 -2 3 750 343 300 132 28 chr6 21749155 21749299 -127767738 - MIRb SINE MIR -67 201 43 3 750 357 24 0 0 chr6 21749704 21749746 -127767291 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 750 562 262 67 105 chr6 21750297 21750434 -127766603 + B4A SINE B4 3 137 -155 3 750 3639 58 9 7 chr6 21750434 21750869 -127766168 - RLTR10C LTR ERVK 0 436 1 3 750 562 269 77 104 chr6 21750869 21751001 -127766036 + B4A SINE B4 138 274 -18 3 750 23 0 0 0 chr6 21751076 21751099 -127765938 + AT_rich Low_complexity Low_complexity 1 23 0 3 750 468 240 0 10 chr6 21751104 21751201 -127765836 + B1_Mur3 SINE Alu 33 128 -21 3 750 9374 22 0 0 chr6 21751244 21752309 -127764728 + L1Md_T LINE L1 4520 5584 -299 3 750 9134 28 0 0 chr6 21752311 21753306 -127763731 + L1Md_T LINE L1 5587 6581 -1 3 750 343 0 0 41 chr6 21753382 21753431 -127763606 + (GTTTG)n Simple_repeat Simple_repeat 3 49 0 3 750 419 248 0 65 chr6 21754494 21754602 -127762435 + B1F SINE Alu 49 149 0 3 750 185 94 0 30 chr6 21756028 21756043 -127760994 + (TATATG)n Simple_repeat Simple_repeat 1 15 0 3 750 213 39 0 0 chr6 21756043 21756069 -127760968 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 750 185 94 0 30 chr6 21756069 21756086 -127760951 + (TATATG)n Simple_repeat Simple_repeat 2 18 0 3 751 223 253 218 0 chr6 21758263 21758350 -127758687 - L2 LINE L2 -528 2891 2786 3 751 3520 29 2 0 chr6 21758505 21758981 -127758056 + L1Md_F3 LINE L1 5513 5989 -595 3 751 1366 35 17 6 chr6 21758981 21759153 -127757884 + L1Md_F3 LINE L1 6409 6582 -2 3 751 498 17 0 0 chr6 21760135 21760194 -127756843 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 751 486 297 94 25 chr6 21760196 21760355 -127756682 - B3A SINE B2 -28 170 1 3 751 26721 98 8 1 chr6 21760720 21765290 -127751747 - L1_Mus1 LINE L1 -1 6566 1965 3 751 4866 159 19 71 chr6 21765278 21766391 -127750646 - L1_Mus1 LINE L1 -5347 1310 215 3 751 291 297 13 26 chr6 21767125 21767201 -127749836 + L2b LINE L2 3284 3358 -17 3 751 353 308 149 33 chr6 21769099 21769374 -127747663 + HAL1 LINE L1 1553 1859 -648 3 751 313 294 70 65 chr6 21769689 21769918 -127747119 + HAL1 LINE L1 2272 2501 -6 3 751 429 95 0 0 chr6 21770474 21770537 -127746500 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 751 3463 61 11 7 chr6 21770632 21771169 -127745868 + L1Md_F2 LINE L1 6114 6582 0 3 751 251 227 45 0 chr6 21771207 21771273 -127745764 - Lx8 LINE L1 -2 7471 7403 3 751 260 172 86 0 chr6 21771325 21771383 -127745654 - Lx8 LINE L1 -408 7065 7003 3 751 459 101 0 0 chr6 21771398 21771477 -127745560 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 751 21 0 0 0 chr6 21772282 21772303 -127744734 + AT_rich Low_complexity Low_complexity 1 21 0 3 751 371 246 0 14 chr6 21774208 21774282 -127742755 + ID4_ SINE ID 4 76 -7 3 751 181 185 15 15 chr6 21774437 21774503 -127742534 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 751 351 0 0 0 chr6 21774570 21774609 -127742428 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 751 285 276 222 24 chr6 21774866 21774992 -127742045 + RSINE1 SINE B4 3 153 -12 3 751 216 67 0 0 chr6 21774998 21775028 -127742009 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 751 297 0 0 0 chr6 21775028 21775060 -127741977 + (TAA)n Simple_repeat Simple_repeat 3 35 0 3 751 3179 53 53 3 chr6 21775079 21775456 -127741581 + MTA_Mm LTR MaLR 1 396 0 3 751 812 175 234 5 chr6 21775572 21775756 -127741281 + URR1A DNA MER1_type 1 226 0 3 751 299 330 26 9 chr6 21776014 21776127 -127740910 - PB1D7 SINE Alu -5 115 1 3 751 27 29 0 0 chr6 21776678 21776712 -127740325 + AT_rich Low_complexity Low_complexity 1 34 0 3 751 2038 86 50 0 chr6 21776715 21776994 -127740043 - Lx3A LINE L1 -7 6974 6682 3 751 221 75 0 24 chr6 21779628 21779669 -127737368 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 3 751 621 160 200 0 chr6 21779669 21779794 -127737243 - B1_Mur4 SINE Alu 0 150 1 3 751 966 230 49 5 chr6 21780510 21780715 -127736322 + B3 SINE B2 1 214 -2 3 751 424 343 68 6 chr6 21780868 21781044 -127735993 + MER53 DNA hAT 1 187 -6 3 751 444 37 0 0 chr6 21781760 21781814 -127735223 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 751 438 20 0 0 chr6 21781814 21781864 -127735173 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 751 291 202 98 105 chr6 21782330 21782463 -127734574 + MIR SINE MIR 97 228 -34 3 751 1219 117 78 0 chr6 21784003 21784183 -127732854 - B2_Mm2 SINE B2 0 195 2 3 751 370 331 66 18 chr6 21784503 21784669 -127732368 + MER63A DNA AcHobo 36 209 -1 4 751 307 306 76 87 chr6 21786780 21786952 -127730085 + L1MC4 LINE L1 6859 7028 -1014 4 751 231 36 0 0 chr6 21787535 21787563 -127729474 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 751 315 0 0 0 chr6 21787603 21787638 -127729399 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 751 266 301 93 74 chr6 21787649 21788080 -127728957 + L1MC4 LINE L1 7292 7730 -231 4 751 197 345 59 17 chr6 21789453 21789571 -127727466 - L2b LINE L2 -252 3123 3001 4 751 229 372 58 44 chr6 21789987 21790282 -127726755 + L2 LINE L2 2435 2733 -686 4 751 2516 66 119 11 chr6 21791482 21791834 -127725203 + RLTR10 LTR ERVK 1 390 0 4 751 4608 27 0 0 chr6 21791834 21792452 -127724585 + RLTR10-int LTR ERVK 302 992 -995 4 751 363 296 12 25 chr6 21792496 21792659 -127724378 + RLTR10-int LTR ERVK 1434 1594 -5987 4 751 8818 23 0 1 chr6 21792741 21793737 -127723300 + RLTR10-int LTR ERVK 990 1984 -3 4 751 1782 40 13 0 chr6 21793739 21793967 -127723070 + RLTR10 LTR ERVK 1 231 -159 4 751 3523 50 27 20 chr6 21793971 21794420 -127722617 + IAPEz-int LTR ERVK 211 662 -5819 4 751 2288 58 0 0 chr6 21794420 21794698 -127722339 + IAPEz-int LTR ERVK 1359 1636 -4845 4 751 3052 39 0 24 chr6 21794697 21795069 -127721968 + IAPEz-int LTR ERVK 5736 6098 -383 4 751 2459 102 66 63 chr6 21795079 21795489 -127721548 + IAPLTR2a LTR ERVK 1 411 0 4 751 840 10 0 0 chr6 21795489 21795586 -127721451 - RLTR10 LTR ERVK -293 97 1 4 751 300 120 0 0 chr6 21798325 21798375 -127718662 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 751 379 282 25 107 chr6 21798881 21799040 -127717997 - B1F SINE Alu -2 147 2 4 751 357 93 0 0 chr6 21799237 21799291 -127717746 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 751 381 43 0 0 chr6 21802172 21802219 -127714818 + (A)n Simple_repeat Simple_repeat 1 47 0 4 751 293 102 0 17 chr6 21803182 21803242 -127713795 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 4 751 197 341 15 96 chr6 21804016 21804152 -127712885 + MER5B DNA MER1_type 50 174 -4 4 751 216 0 0 0 chr6 21805009 21805033 -127712004 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 751 379 275 77 84 chr6 21805437 21805453 -127711584 + B4A SINE B4 71 220 -68 4 751 862 163 7 0 chr6 21805453 21805588 -127711449 + B1_Mur2 SINE Alu 7 142 -7 4 751 21 57 0 0 chr6 21805592 21805627 -127711410 + AT_rich Low_complexity Low_complexity 1 35 0 4 751 261 0 0 0 chr6 21806340 21806369 -127710668 + (A)n Simple_repeat Simple_repeat 1 29 0 4 751 214 324 0 0 chr6 21806833 21806901 -127710136 + (TATG)n Simple_repeat Simple_repeat 1 68 0 4 751 437 0 19 0 chr6 21807374 21807427 -127709610 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 751 426 39 0 0 chr6 21807427 21807478 -127709559 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 751 396 0 0 0 chr6 21807515 21807559 -127709478 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 751 759 120 0 0 chr6 21808197 21808314 -127708723 + (GA)n Simple_repeat Simple_repeat 2 118 0 4 751 324 247 26 0 chr6 21808741 21808818 -127708219 - LTR85b LTR Gypsy? -5 779 701 4 751 341 285 13 46 chr6 21809851 21810002 -127707035 + GA-rich Low_complexity Low_complexity 2 147 0 4 751 234 247 0 33 chr6 21810038 21810222 -127706815 + CT-rich Low_complexity Low_complexity 2 179 0 4 751 215 240 11 39 chr6 21810243 21810425 -127706612 + CT-rich Low_complexity Low_complexity 1 177 0 4 751 270 218 0 37 chr6 21810477 21810639 -127706398 + CT-rich Low_complexity Low_complexity 2 157 0 4 751 577 38 25 0 chr6 21812184 21812264 -127704773 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 751 340 260 9 123 chr6 21812273 21812387 -127704650 - B3 SINE B2 -115 101 1 4 751 181 53 0 73 chr6 21816012 21816053 -127700984 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 4 751 229 238 114 63 chr6 21817499 21817674 -127699363 - RMER17C LTR ERVK -119 291 108 4 751 258 192 0 0 chr6 21818121 21818173 -127698864 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 751 1201 231 120 105 chr6 21818211 21818763 -127698274 + RMER4B LTR ERVK 17 576 -9 4 751 480 305 23 8 chr6 21818777 21818909 -127698128 - B3A SINE B2 -42 156 23 4 751 29 60 0 0 chr6 21819440 21819490 -127697547 + AT_rich Low_complexity Low_complexity 1 50 0 4 751 1000 174 115 38 chr6 21819895 21820104 -127696933 - URR1A DNA MER1_type -1 225 1 4 751 837 276 118 4 chr6 21820236 21820491 -127696546 - B4A SINE B4 0 292 9 4 751 343 299 105 39 chr6 21820903 21821056 -127695981 - MamRep605 Unknown Unknown -147 729 567 4 751 302 345 106 14 chr6 21821520 21821661 -127695376 + HAL1-3A_ME LINE L1 2284 2437 -421 4 751 1218 214 103 3 chr6 21822278 21822578 -127694459 + Lx9 LINE L1 7313 7642 -2 4 751 544 317 42 56 chr6 21822931 21823145 -127693892 - ID_B1 SINE B4 -12 212 2 4 751 22111 19 0 0 chr6 21823285 21825803 -127691234 + L1Md_T LINE L1 3069 5586 -297 4 751 9595 5 0 0 chr6 21825803 21826799 -127690238 + L1Md_T LINE L1 5587 6582 0 4 751 198 128 0 0 chr6 21826888 21826927 -127690110 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 4 751 279 0 0 0 chr6 21826927 21826958 -127690079 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 751 455 205 36 0 chr6 21827018 21827101 -127689936 - B3A SINE B2 -102 96 11 4 751 522 320 139 25 chr6 21827140 21827707 -127689330 - Kanga1a DNA Tc2 -121 633 2 4 751 370 260 69 38 chr6 21827830 21827990 -127689047 + MER53 DNA hAT 23 187 -6 4 751 228 35 0 0 chr6 21828453 21828482 -127688555 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 751 25 0 0 0 chr6 21829263 21829288 -127687749 + AT_rich Low_complexity Low_complexity 1 25 0 4 751 24 0 0 0 chr6 21829448 21829472 -127687565 + AT_rich Low_complexity Low_complexity 1 24 0 4 751 180 0 0 0 chr6 21829921 21829941 -127687096 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 751 198 224 0 0 chr6 21830225 21830274 -127686763 + GA-rich Low_complexity Low_complexity 2 50 0 4 751 798 67 0 0 chr6 21830274 21830379 -127686658 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 4 751 504 0 0 0 chr6 21830806 21830862 -127686175 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 751 9856 7 3 0 chr6 21830907 21831997 -127685040 + L1Md_A LINE L1 4494 5586 -297 4 751 9412 14 0 0 chr6 21831997 21832993 -127684044 + L1Md_A LINE L1 5587 6582 0 4 751 407 200 12 48 chr6 21833663 21833747 -127683290 + ID4_ SINE ID 1 81 -2 4 751 200 213 21 0 chr6 21834695 21834742 -127682295 + CT-rich Low_complexity Low_complexity 1 48 0 4 751 21 57 0 0 chr6 21834917 21834952 -127682085 + AT_rich Low_complexity Low_complexity 1 35 0 4 751 250 206 0 31 chr6 21836021 21836086 -127680951 + L1MEf LINE L1 1411 1473 -4769 4 751 373 214 9 18 chr6 21836118 21836232 -127680805 + CT-rich Low_complexity Low_complexity 2 114 0 4 751 296 306 127 18 chr6 21836250 21836360 -127680677 - B1_Mur1 SINE Alu -17 132 11 4 751 343 349 97 11 chr6 21836374 21836641 -127680396 + L1MEf LINE L1 1499 1788 -4454 4 751 353 299 19 65 chr6 21836771 21836925 -127680112 + L1MEf LINE L1 4175 4321 -1825 4 751 294 321 92 9 chr6 21836936 21837394 -127679643 + L1MEf LINE L1 4797 5300 -846 4 751 498 246 31 8 chr6 21837452 21837579 -127679458 + B1F SINE Alu 18 147 -2 4 751 377 301 115 11 chr6 21837630 21837995 -127679042 + L1M5 LINE L1 5398 5800 -364 4 751 756 314 99 32 chr6 21838383 21839006 -127678031 + Tigger2b DNA MER2_type 62 726 0 4 751 21 0 0 0 chr6 21839546 21839567 -127677470 + AT_rich Low_complexity Low_complexity 1 21 0 4 751 391 58 28 28 chr6 21839625 21839696 -127677341 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 4 751 24 67 0 0 chr6 21840269 21840314 -127676723 + AT_rich Low_complexity Low_complexity 1 45 0 4 751 1358 235 99 9 chr6 21840636 21840958 -127676079 - ORR1D2 LTR MaLR -12 358 8 4 751 951 50 0 0 chr6 21841377 21841498 -127675539 + (TCCC)n Simple_repeat Simple_repeat 3 123 0 4 751 1487 215 58 51 chr6 21841575 21842016 -127675021 - RMER16 LTR ERVK 0 533 1 4 751 248 303 61 0 chr6 21842042 21842141 -127674896 - ID_B1 SINE B4 -3 221 117 4 751 200 306 14 0 chr6 21842567 21842639 -127674398 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 4 751 688 55 22 0 chr6 21842641 21842732 -127674305 + B1_Mus2 SINE Alu 49 141 -6 4 751 523 308 12 25 chr6 21842736 21842899 -127674138 - B4A SINE B4 -120 172 12 4 751 432 0 0 0 chr6 21843096 21843144 -127673893 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 751 318 175 0 0 chr6 21845038 21845118 -127671919 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 751 968 296 36 73 chr6 21845119 21845421 -127671616 - B4 SINE B4 0 292 2 4 751 573 301 40 40 chr6 21846356 21846508 -127670529 - B4A SINE B4 0 292 141 4 751 369 0 0 0 chr6 21846508 21846549 -127670488 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 751 7093 88 22 9 chr6 21846549 21847588 -127669449 - Lx LINE L1 -15 6639 5587 4 751 490 320 82 6 chr6 21847614 21847796 -127669241 - B4A SINE B4 -95 197 2 4 751 1245 198 139 42 chr6 21847841 21848178 -127668859 + ORR1D2 LTR MaLR 1 370 0 4 751 329 272 117 0 chr6 21848458 21848561 -127668476 - ORR1E LTR MaLR -243 116 2 4 751 348 312 25 0 chr6 21848990 21849150 -127667887 - Arthur1 DNA Tip100 -285 3662 3499 4 751 1030 70 134 0 chr6 21849150 21849307 -127667730 + B2_Mm1t SINE B2 2 179 -14 4 751 424 82 35 0 chr6 21849335 21849441 -127667596 + B2_Mm2 SINE B2 47 191 -4 4 751 1063 360 65 50 chr6 21849495 21850343 -127666694 - Arthur1 DNA Tip100 -2981 966 106 4 751 332 338 88 40 chr6 21850498 21850748 -127666289 + MLT1C LTR MaLR 203 464 -3 4 751 288 284 12 0 chr6 21851096 21851177 -127665860 + GA-rich Low_complexity Low_complexity 6 87 0 4 751 297 0 0 0 chr6 21851241 21851274 -127665763 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 751 3221 48 0 2 chr6 21851411 21851809 -127665228 + L1Md_F3 LINE L1 6174 6570 -14 4 751 213 178 0 0 chr6 21851812 21851857 -127665180 + A-rich Low_complexity Low_complexity 1 45 0 4 751 1103 77 0 7 chr6 21851866 21852009 -127665028 + B1_Mus1 SINE Alu 1 142 -6 4 751 1203 107 0 0 chr6 21852023 21852201 -127664836 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 4 751 30 45 0 0 chr6 21852224 21852268 -127664769 + AT_rich Low_complexity Low_complexity 1 44 0 4 751 508 262 66 82 chr6 21852346 21852444 -127664593 - L1MC4 LINE L1 -415 7627 7525 4 751 1973 104 118 0 chr6 21852444 21852733 -127664304 - ORR1A2 LTR MaLR 0 327 5 4 751 508 262 66 82 chr6 21852733 21853058 -127663979 - L1MC4 LINE L1 -518 7524 7211 4 751 4902 214 42 7 chr6 21853078 21854182 -127662855 + Lx7 LINE L1 6302 7443 -253 4 751 2180 168 45 0 chr6 21854187 21854562 -127662475 + ORR1B1 LTR MaLR 1 392 -2 4 751 2791 242 84 19 chr6 21854564 21855373 -127661664 + ORR1B1-int LTR MaLR 1 862 -647 4 751 438 69 0 0 chr6 21855369 21855427 -127661610 + ORR1B1 LTR MaLR 336 393 -1 5 751 486 0 0 0 chr6 21855449 21855503 -127661534 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 751 317 231 122 16 chr6 21855556 21855679 -127661358 + Lx7 LINE L1 7561 7696 0 4 751 339 277 10 21 chr6 21855811 21855907 -127661130 + MER21B LTR ERV1 1 95 -768 5 751 233 22 42 42 chr6 21855909 21855957 -127661080 + (CATA)n Simple_repeat Simple_repeat 1 48 0 5 751 436 255 37 9 chr6 21856214 21856321 -127660716 - RSINE1 SINE B4 -52 113 4 5 751 274 277 195 46 chr6 21856367 21856541 -127660496 + MER21B LTR ERV1 320 519 -344 5 751 387 0 0 0 chr6 21857297 21857340 -127659697 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 751 992 289 91 34 chr6 21857408 21858729 -127658308 - Lx7 LINE L1 -1781 5915 4459 5 751 25 0 0 28 chr6 21858838 21858850 -127658187 + AT_rich Low_complexity Low_complexity 1 12 0 5 751 848 269 14 0 chr6 21858850 21859062 -127657975 + B3 SINE B2 2 216 0 5 751 25 0 0 28 chr6 21859062 21859085 -127657952 + AT_rich Low_complexity Low_complexity 1 23 0 5 751 2926 115 24 11 chr6 21860065 21860523 -127656514 - Lx LINE L1 -7 6647 6184 5 751 519 17 0 0 chr6 21861090 21861150 -127655887 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 751 208 341 62 78 chr6 21862058 21862300 -127654737 - MIRb SINE MIR -11 257 20 5 751 180 354 10 10 chr6 21862362 21862459 -127654578 - MIR SINE MIR -62 200 104 5 751 743 257 67 6 chr6 21862515 21862695 -127654342 + MTD LTR MaLR 18 208 -211 5 751 586 266 44 0 chr6 21862695 21862853 -127654184 - Lx9 LINE L1 -655 6989 6825 5 751 812 270 133 42 chr6 21862852 21863249 -127653788 + Lx9 LINE L1 6992 7433 -211 5 751 288 0 0 0 chr6 21863249 21863281 -127653756 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 751 812 270 133 42 chr6 21863281 21863385 -127653652 + Lx9 LINE L1 7434 7539 -105 5 751 835 221 36 27 chr6 21863546 21863765 -127653272 + MTD LTR MaLR 199 419 0 5 751 406 252 65 9 chr6 21865955 21866063 -127650974 + ID_B1 SINE B4 99 212 -12 5 751 3171 138 22 0 chr6 21867226 21867727 -127649310 + Lx4A LINE L1 6444 6955 -103 5 751 9819 136 74 20 chr6 21867741 21868448 -127648589 + Lx LINE L1 3920 4727 -1156 5 751 1083 87 0 0 chr6 21868448 21868586 -127648451 + B1_Mm SINE Alu 1 138 -9 5 751 600 40 0 0 chr6 21868587 21868662 -127648375 + (GA)n Simple_repeat Simple_repeat 1 75 0 5 751 9819 115 60 11 chr6 21868662 21870538 -127646499 + Lx LINE L1 4728 6648 -6 5 751 6633 83 11 2 chr6 21870911 21872443 -127644594 + L1_Mus1 LINE L1 5021 6567 0 5 751 208 329 0 27 chr6 21873360 21873435 -127643602 + G-rich Low_complexity Low_complexity 6 78 0 5 751 200 406 0 0 chr6 21873676 21873745 -127643292 - L2 LINE L2 -475 2944 2876 5 751 2193 171 19 21 chr6 21874418 21874847 -127642190 - BGLII_B LTR ERVK 0 441 14 5 751 3048 70 17 2 chr6 21875483 21875898 -127641139 + BGLII LTR ERVK 1 421 0 5 751 344 260 95 95 chr6 21876588 21877009 -127640028 + L1M5 LINE L1 3639 4059 -2087 5 751 499 295 134 17 chr6 21877120 21877467 -127639570 - MLT1B LTR MaLR -2 388 1 5 751 456 157 0 0 chr6 21877656 21877726 -127639311 + MusHAL1 LINE L1 984 1053 -1659 5 751 7332 84 7 6 chr6 21877745 21878844 -127638193 + MusHAL1 LINE L1 984 2084 -628 5 751 1142 71 0 0 chr6 21879017 21879158 -127637879 + B1_Mus2 SINE Alu 1 141 -6 5 751 222 150 0 0 chr6 21879166 21879206 -127637831 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 5 751 475 163 81 0 chr6 21880066 21880152 -127636885 + ORR1B1 LTR MaLR 1 93 -301 5 751 24887 154 18 18 chr6 21880401 21882689 -127634348 + Lx3C LINE L1 720 3019 -2867 5 751 3522 15 2 0 chr6 21882689 21883084 -127633953 + MTA_Mm LTR MaLR 1 396 0 5 751 24887 155 21 11 chr6 21883084 21886992 -127630045 + Lx3C LINE L1 3020 6974 -2 5 751 1329 162 123 3 chr6 21887000 21887273 -127629764 + ORR1B1 LTR MaLR 76 365 -9 5 751 242 95 0 23 chr6 21887529 21887572 -127629465 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 751 1082 151 115 5 chr6 21887663 21887863 -127629174 - URR1A DNA MER1_type -2 224 3 5 751 695 282 45 35 chr6 21888089 21888291 -127628746 - MER20 DNA MER1_type -12 207 4 5 751 185 244 31 104 chr6 21888521 21888617 -127628420 + L2 LINE L2 2414 2502 -917 5 752 866 165 140 11 chr6 21889824 21890002 -127627035 + URR1A DNA MER1_type 2 202 -24 5 752 375 288 25 8 chr6 21890701 21890820 -127626217 - L2c LINE L2 0 3387 3267 5 752 830 281 57 18 chr6 21891040 21891268 -127625769 + B4A SINE B4 1 237 -55 5 752 760 319 59 31 chr6 21891337 21891698 -127625339 + MTD LTR MaLR 28 395 -5 5 752 258 238 0 0 chr6 21891900 21891942 -127625095 + ID4_ SINE ID 38 79 -4 5 752 342 250 250 33 chr6 21891978 21892098 -127624939 + B1_Mus2 SINE Alu 1 146 -1 5 752 344 77 19 0 chr6 21892099 21892151 -127624886 + (CAAAA)n Simple_repeat Simple_repeat 1 53 0 5 752 26 0 0 0 chr6 21892268 21892294 -127624743 + AT_rich Low_complexity Low_complexity 1 26 0 5 752 773 191 62 26 chr6 21892361 21892398 -127624639 + RMER6D LTR ERVK 358 391 -299 5 752 558 0 0 0 chr6 21892398 21892460 -127624577 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 752 1786 145 28 2 chr6 21892460 21892772 -127624265 + RMER6D LTR ERVK 392 716 -4 5 752 542 346 34 25 chr6 21892854 21893091 -127623946 - MER97c DNA MER1_type? -850 240 2 5 752 27 49 0 0 chr6 21893494 21893535 -127623502 + AT_rich Low_complexity Low_complexity 1 41 0 5 752 2108 118 20 114 chr6 21894572 21894645 -127622392 - ORR1B1 LTR MaLR -8 386 351 5 752 4054 33 21 0 chr6 21894645 21895131 -127621906 - L1Md_F2 LINE L1 0 6582 6087 5 752 2108 118 20 114 chr6 21895131 21895460 -127621577 - ORR1B1 LTR MaLR -44 350 22 5 752 211 147 29 14 chr6 21895499 21895568 -127621469 + A-rich Low_complexity Low_complexity 4 73 0 5 752 639 259 72 0 chr6 21896425 21896564 -127620473 + RSINE1 SINE B4 12 160 -5 5 752 255 315 72 52 chr6 21896713 21896907 -127620130 - MIR SINE MIR 0 262 65 5 752 626 287 0 7 chr6 21897549 21897693 -127619344 + ID_B1 SINE B4 81 223 -1 5 752 419 309 41 0 chr6 21898528 21898651 -127618386 - ID_B1 SINE B4 0 224 97 5 752 231 146 0 0 chr6 21899603 21899644 -127617393 + (T)n Simple_repeat Simple_repeat 1 41 0 5 752 196 178 14 14 chr6 21899817 21899891 -127617146 + (CGGG)n Simple_repeat Simple_repeat 3 76 0 5 752 237 65 0 0 chr6 21899945 21899976 -127617061 + (CACG)n Simple_repeat Simple_repeat 3 33 0 5 752 263 338 18 67 chr6 21900606 21900771 -127616266 - ID_B1 SINE B4 -1 223 67 5 752 22 0 0 0 chr6 21901176 21901198 -127615839 + AT_rich Low_complexity Low_complexity 1 22 0 5 752 271 212 167 0 chr6 21902373 21902439 -127614598 + URR1B DNA MER1_type 33 109 -116 5 752 448 212 0 0 chr6 21902434 21902519 -127614518 + URR1A DNA MER1_type 141 225 -1 5 752 238 197 115 11 chr6 21902654 21902741 -127614296 + MIRc SINE MIR 12 112 -156 5 752 966 235 61 0 chr6 21903241 21903437 -127613600 + B3 SINE B2 1 208 -8 5 752 292 161 0 94 chr6 21904309 21904405 -127612632 + T-rich Low_complexity Low_complexity 4 90 0 5 752 778 271 157 62 chr6 21904875 21905245 -127611792 - MTD LTR MaLR -14 405 1 5 752 1857 265 127 25 chr6 21905507 21906365 -127610672 - Lx8 LINE L1 -98 7375 6430 5 752 497 231 169 0 chr6 21906426 21906556 -127610481 - B3A SINE B2 -46 152 1 5 752 537 94 0 0 chr6 21906844 21906929 -127610108 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 752 414 0 0 0 chr6 21907380 21907426 -127609611 + (TCC)n Simple_repeat Simple_repeat 1 46 0 5 752 242 273 0 67 chr6 21907458 21907539 -127609498 - PB1D10 SINE Alu 0 120 46 5 752 879 36 0 0 chr6 21908832 21908943 -127608094 + (TC)n Simple_repeat Simple_repeat 2 112 0 5 752 207 0 0 0 chr6 21908943 21908965 -127608072 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 752 389 322 121 25 chr6 21908987 21909302 -127607735 - Lx9 LINE L1 -197 7447 7103 5 752 825 295 27 42 chr6 21909307 21909717 -127607320 + Lx9 LINE L1 6678 7081 -563 5 752 525 268 16 0 chr6 21910007 21910130 -127606907 + RSINE1 SINE B4 8 132 -33 5 752 1032 53 0 15 chr6 21910225 21910360 -127606677 + B1_Mus1 SINE Alu 16 148 0 5 752 24 0 0 0 chr6 21910364 21910388 -127606649 + AT_rich Low_complexity Low_complexity 1 24 0 5 752 194 247 82 94 chr6 21912860 21912945 -127604092 + L2c LINE L2 3293 3376 -11 5 752 277 318 0 0 chr6 21913463 21913529 -127603508 + MIRb SINE MIR 61 126 -142 5 752 562 216 0 0 chr6 21913639 21913741 -127603296 + MTD LTR MaLR 1 102 -317 5 752 1120 161 242 7 chr6 21913749 21914042 -127602995 - ORR1C2 LTR MaLR -22 362 1 5 752 1012 195 219 4 chr6 21914042 21914307 -127602730 + MTD LTR MaLR 95 419 0 5 752 216 163 0 0 chr6 21914501 21914544 -127602493 + G-rich Low_complexity Low_complexity 4 46 0 5 752 485 219 14 158 chr6 21914573 21914719 -127602318 - B1_Mur1 SINE Alu -23 126 2 5 752 487 311 70 21 chr6 21914772 21914959 -127602078 - B3A SINE B2 -2 196 1 5 752 3655 58 2 0 chr6 21917819 21918270 -127598767 + L1_Mus1 LINE L1 6114 6565 -2 5 752 23 0 0 0 chr6 21919185 21919208 -127597829 + AT_rich Low_complexity Low_complexity 1 23 0 5 752 192 97 0 0 chr6 21921140 21921171 -127595866 + (TCC)n Simple_repeat Simple_repeat 3 33 0 5 752 1107 224 64 88 chr6 21922308 21922676 -127594361 - ORR1E LTR MaLR 0 419 3 5 752 195 114 0 0 chr6 21924132 21924167 -127592870 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 752 195 69 0 0 chr6 21926304 21926333 -127590704 + (A)n Simple_repeat Simple_repeat 1 29 0 5 752 229 191 15 31 chr6 21926883 21926948 -127590089 - B4 SINE B4 -216 76 13 5 752 237 135 0 0 chr6 21927378 21927430 -127589607 + (T)n Simple_repeat Simple_repeat 1 52 0 5 752 3452 18 5 5 chr6 21928244 21928640 -127588397 - MTA_Mm LTR MaLR 0 396 1 5 752 222 232 0 35 chr6 21928759 21928817 -127588220 + GA-rich Low_complexity Low_complexity 3 58 0 5 752 468 273 32 71 chr6 21929154 21929308 -127587729 - B1F SINE Alu 0 149 2 5 752 180 0 0 0 chr6 21929430 21929450 -127587587 + (A)n Simple_repeat Simple_repeat 1 20 0 5 752 242 228 34 41 chr6 21932142 21932239 -127584798 + B1_Mur1 SINE Alu 26 149 0 5 752 252 273 30 0 chr6 21932267 21932333 -127584704 + ID4 SINE ID 2 69 -14 6 752 378 0 0 0 chr6 21932560 21932602 -127584435 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 752 1045 288 99 19 chr6 21932789 21933412 -127583625 + L1MA6 LINE L1 5266 5938 -362 6 752 283 316 29 0 chr6 21933410 21933546 -127583491 + L1MA6 LINE L1 6136 6275 -25 6 752 421 152 8 41 chr6 21934765 21934888 -127582149 + T-rich Low_complexity Low_complexity 3 121 0 6 752 457 71 47 0 chr6 21934895 21934980 -127582057 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 6 752 402 21 0 0 chr6 21937360 21937407 -127579630 + (GAAA)n Simple_repeat Simple_repeat 1 47 0 6 752 408 320 8 8 chr6 21937638 21937761 -127579276 + B1F SINE Alu 14 136 -13 6 752 436 246 94 29 chr6 21937780 21937918 -127579119 + B1F SINE Alu 2 148 -1 6 752 694 152 14 7 chr6 21937918 21938057 -127578980 + GA-rich Low_complexity Low_complexity 1 140 0 6 752 23 68 0 0 chr6 21939669 21939713 -127577324 + AT_rich Low_complexity Low_complexity 1 44 0 6 752 558 0 0 0 chr6 21941594 21941656 -127575381 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 752 1174 41 7 14 chr6 21941957 21942104 -127574933 - B1_Mm SINE Alu 0 147 2 6 752 186 189 0 0 chr6 21942470 21942507 -127574530 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 6 752 866 294 163 27 chr6 21944485 21944890 -127572147 + MLT1C LTR MaLR 1 460 -7 6 752 207 108 0 26 chr6 21945133 21945171 -127571866 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 752 1318 165 9 4 chr6 21945365 21945590 -127571447 - URR1A DNA MER1_type 0 226 1 6 752 1553 222 68 16 chr6 21947211 21947595 -127569442 + MTD LTR MaLR 2 405 -14 6 752 286 193 36 0 chr6 21947718 21947801 -127569236 + Lx5 LINE L1 6965 7050 0 6 752 567 29 0 0 chr6 21947915 21947984 -127569053 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 6 752 339 25 0 0 chr6 21948596 21948636 -127568401 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 752 270 0 0 0 chr6 21948636 21948665 -127568372 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 752 522 0 0 0 chr6 21948665 21948722 -127568315 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 752 360 0 0 0 chr6 21949584 21949624 -127567413 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 752 348 24 0 0 chr6 21949624 21949664 -127567373 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 752 258 32 0 0 chr6 21949797 21949828 -127567209 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 6 752 560 189 307 0 chr6 21949828 21949981 -127567056 - B3 SINE B2 -16 200 1 6 752 1124 67 24 12 chr6 21952193 21952360 -127564677 + B2_Mm2 SINE B2 2 170 -25 6 752 204 40 0 0 chr6 21953553 21953578 -127563459 + (T)n Simple_repeat Simple_repeat 1 25 0 6 752 225 0 0 0 chr6 21955764 21955789 -127561248 + (AAATG)n Simple_repeat Simple_repeat 1 25 0 6 752 279 0 0 0 chr6 21956389 21956420 -127560617 + (T)n Simple_repeat Simple_repeat 1 31 0 6 752 438 268 37 102 chr6 21956821 21956938 -127560099 + Lx8 LINE L1 6734 6842 -631 6 752 879 152 0 20 chr6 21956938 21957086 -127559951 - B1_Mur4 SINE Alu -1 149 5 6 752 438 268 37 102 chr6 21957086 21957155 -127559882 + Lx8 LINE L1 6843 6908 -565 6 752 3459 57 5 7 chr6 21957157 21957598 -127559439 + L1Md_F2 LINE L1 6143 6582 0 6 752 180 0 0 0 chr6 21957692 21957712 -127559325 + (A)n Simple_repeat Simple_repeat 1 20 0 6 752 945 299 127 6 chr6 21957712 21958217 -127558820 + Lx8 LINE L1 6906 7471 -2 6 752 444 227 0 0 chr6 21958254 21958373 -127558664 + GA-rich Low_complexity Low_complexity 3 121 0 6 752 728 265 35 15 chr6 21958475 21958674 -127558363 + B3 SINE B2 4 206 -10 6 752 3425 252 45 24 chr6 21958685 21959652 -127557385 + Lx7 LINE L1 6600 7696 0 6 752 1398 244 46 16 chr6 21961234 21961600 -127555437 + MTD LTR MaLR 1 377 -42 6 752 216 374 11 0 chr6 21961835 21961926 -127555111 - MIR SINE MIR -21 241 150 6 752 645 171 35 0 chr6 21962049 21962219 -127554818 + CT-rich Low_complexity Low_complexity 2 177 0 6 752 306 304 29 19 chr6 21962231 21962335 -127554702 - B1F1 SINE Alu -44 105 1 6 752 1951 162 57 42 chr6 21962540 21962945 -127554092 + MTC LTR MaLR 11 421 0 6 752 406 285 34 34 chr6 21963189 21963367 -127553670 + B3A SINE B2 21 198 0 6 752 222 128 0 0 chr6 21963411 21963450 -127553587 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 6 752 501 17 0 0 chr6 21963699 21963757 -127553280 + (CAAAT)n Simple_repeat Simple_repeat 2 59 0 6 752 4724 209 70 51 chr6 21963890 21965496 -127551541 + RMER1A Other Other 1 907 -123 6 752 351 0 0 0 chr6 21965496 21965535 -127551502 + (TGG)n Simple_repeat Simple_repeat 1 39 0 6 752 375 23 0 0 chr6 21965536 21965580 -127551457 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 752 4724 171 69 73 chr6 21965580 21965683 -127551354 + RMER1A Other Other 908 1028 -2 6 752 836 304 27 41 chr6 21966102 21966470 -127550567 - MTE2b LTR MaLR -1 378 1 6 752 452 270 26 39 chr6 21968073 21968227 -127548810 - MER2 DNA MER2_type -105 240 89 6 752 198 0 0 0 chr6 21969765 21969787 -127547250 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 752 918 244 10 0 chr6 21970323 21970532 -127546505 - B3 SINE B2 -5 211 1 6 752 26 64 0 0 chr6 21970541 21970588 -127546449 + AT_rich Low_complexity Low_complexity 1 47 0 6 752 411 284 110 0 chr6 21971639 21971766 -127545271 + MER58A DNA MER1_type 27 167 -57 6 752 224 228 18 0 chr6 21972528 21972585 -127544452 + CT-rich Low_complexity Low_complexity 4 61 0 6 752 567 107 0 0 chr6 21972592 21972676 -127544361 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 6 752 326 310 0 0 chr6 21972680 21972751 -127544286 - B1F SINE Alu -75 74 4 6 752 960 283 38 24 chr6 21973094 21973464 -127543573 - MTE2b LTR MaLR 0 379 5 6 752 581 235 96 0 chr6 21974082 21974218 -127542819 - B1F SINE Alu 0 149 1 6 752 505 133 0 0 chr6 21974893 21974968 -127542069 - BC1_Mm scRNA scRNA -76 76 2 6 752 459 0 0 0 chr6 21976985 21977036 -127540001 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 752 195 42 0 0 chr6 21977340 21977364 -127539673 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 752 182 37 37 0 chr6 21977558 21977585 -127539452 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 752 24 32 0 0 chr6 21977665 21977696 -127539341 + AT_rich Low_complexity Low_complexity 1 31 0 6 752 1159 284 11 42 chr6 21977880 21978259 -127538778 - Lx9 LINE L1 -203 7441 7075 6 752 852 288 62 4 chr6 21978268 21978526 -127538511 + Lx9 LINE L1 6745 7017 -627 6 752 1014 31 0 0 chr6 21978544 21978674 -127538363 - L1Md_A LINE L1 0 6582 6453 6 752 245 248 27 98 chr6 21979302 21979414 -127537623 + MER5B DNA MER1_type 30 133 -45 6 752 234 0 0 0 chr6 21980287 21980313 -127536724 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 752 227 373 16 0 chr6 21980525 21980651 -127536386 - MER5A DNA MER1_type -6 183 56 6 752 685 203 28 14 chr6 21980963 21981108 -127535929 - B1_Mm SINE Alu 0 147 1 6 752 215 150 19 39 chr6 21981655 21981759 -127535278 + (TA)n Simple_repeat Simple_repeat 2 103 0 6 752 202 244 0 25 chr6 21981774 21981854 -127535183 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 6 752 567 311 11 32 chr6 21982042 21982206 -127534831 + B3A SINE B2 8 172 -26 6 752 393 39 0 0 chr6 21982206 21982257 -127534780 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 6 752 567 311 11 32 chr6 21982257 21982281 -127534756 + B3A SINE B2 173 192 -6 6 752 189 0 0 0 chr6 21984595 21984616 -127532421 + (A)n Simple_repeat Simple_repeat 1 21 0 6 752 922 179 33 27 chr6 21985311 21985495 -127531542 - B2_Mm2 SINE B2 -10 185 1 6 752 1685 107 46 39 chr6 21985908 21986190 -127530847 + Lx4A LINE L1 6773 7056 -2 6 752 225 0 0 0 chr6 21986190 21986215 -127530822 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 6 752 487 70 0 0 chr6 21986698 21986769 -127530268 + L1Md_F2 LINE L1 6500 6570 -12 6 752 1155 82 0 0 chr6 21986802 21986949 -127530088 + B1_Mus2 SINE Alu 1 147 0 6 752 245 146 0 20 chr6 21987291 21987340 -127529697 + (TAA)n Simple_repeat Simple_repeat 3 50 0 6 752 1147 240 138 19 chr6 21987409 21987775 -127529262 + MTD LTR MaLR 5 405 -14 6 752 442 254 31 23 chr6 21988035 21988164 -127528873 - B1_Mur1 SINE Alu 0 149 20 6 752 225 208 0 165 chr6 21988749 21988870 -127528167 - Lx5 LINE L1 -3 7047 6947 6 752 339 167 0 0 chr6 21988879 21988939 -127528098 - L1MC3 LINE L1 -205 7580 7521 6 752 682 230 62 10 chr6 21989330 21989523 -127527514 + ORR1D2 LTR MaLR 1 203 -167 6 752 4097 97 13 28 chr6 21989523 21989734 -127527303 + L1_Mus3 LINE L1 5290 5502 -381 6 752 1358 70 48 16 chr6 21989734 21989923 -127527114 + B2_Mm2 SINE B2 1 195 0 6 752 7589 75 17 7 chr6 21989923 21991018 -127526019 + L1_Mus3 LINE L1 5503 6594 -44 6 752 1159 48 42 0 chr6 21991018 21991185 -127525852 + B2_Mm2 SINE B2 19 192 -3 6 752 658 251 22 16 chr6 21991218 21991400 -127525637 + ORR1D2 LTR MaLR 192 374 0 6 752 310 266 10 31 chr6 21991408 21991505 -127525532 - L1MC3 LINE L1 -655 7130 7036 6 752 284 300 36 0 chr6 21992836 21992946 -127524091 + BC1_Mm scRNA scRNA 12 125 -27 6 752 4604 72 39 2 chr6 21993147 21993763 -127523274 + L1_Mus4 LINE L1 5992 6630 -6 6 752 281 217 0 12 chr6 21993990 21994074 -127522963 + CT-rich Low_complexity Low_complexity 4 86 0 6 752 586 343 131 4 chr6 21994096 21994348 -127522689 - B4A SINE B4 -1 291 8 6 752 531 0 0 0 chr6 21994375 21994434 -127522603 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 6 752 373 267 67 0 chr6 21994663 21994768 -127522269 + PB1D10 SINE Alu 5 116 -1 6 752 189 0 0 0 chr6 21995829 21995850 -127521187 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 752 450 53 0 0 chr6 21995864 21995921 -127521116 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 6 752 613 277 10 44 chr6 21996265 21996435 -127520602 + B3A SINE B2 1 166 -32 6 752 345 47 0 0 chr6 21996435 21996478 -127520559 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 752 613 277 10 44 chr6 21996478 21996511 -127520526 + B3A SINE B2 167 196 -2 6 752 1397 214 88 6 chr6 21996577 21996920 -127520117 - ORR1D1 LTR MaLR 0 374 4 7 752 21 82 0 0 chr6 21998450 21998499 -127518538 + AT_rich Low_complexity Low_complexity 1 49 0 7 752 1582 57 16 0 chr6 21999552 21999744 -127517293 + B2_Mm2 SINE B2 1 195 0 7 752 509 148 0 0 chr6 21999911 21999999 -127517038 - Lx2 LINE L1 -1 6996 6909 7 752 911 125 125 0 chr6 22000000 22000160 -127516877 - Lx LINE L1 -101 6553 6374 1 752 282 317 106 116 chr6 22000439 22000732 -127516305 + B4A SINE B4 3 292 0 2 752 296 294 49 81 chr6 22001534 22001831 -127515206 - MTEb LTR MaLR -4 375 85 3 752 29 0 0 0 chr6 22001994 22002023 -127515014 + AT_rich Low_complexity Low_complexity 1 29 0 4 752 993 308 46 53 chr6 22002154 22002506 -127514531 + MTD LTR MaLR 8 358 -61 5 752 3220 37 50 0 chr6 22002506 22002883 -127514154 - MTA_Mm LTR MaLR 0 396 1 6 752 993 308 46 53 chr6 22002883 22002945 -127514092 + MTD LTR MaLR 359 419 0 5 752 576 106 0 0 chr6 22002957 22003042 -127513995 + (TA)n Simple_repeat Simple_repeat 2 86 0 7 752 1963 196 19 6 chr6 22003239 22003604 -127513433 + ORR1D1 LTR MaLR 1 370 -4 8 752 708 269 57 8 chr6 22003698 22003945 -127513092 - L1MC4a LINE L1 -542 7340 7082 9 752 345 315 143 30 chr6 22004172 22004437 -127512600 - L2a LINE L2 -6 3420 3126 1 752 728 221 44 0 chr6 22004437 22004573 -127512464 + B1_Mus2 SINE Alu 4 145 -2 1 752 249 256 0 0 chr6 22004707 22004789 -127512248 + T-rich Low_complexity Low_complexity 1 82 0 1 752 1750 212 14 22 chr6 22004800 22005166 -127511871 - ORR1D1 LTR MaLR 0 374 12 1 752 750 194 194 0 chr6 22005162 22005317 -127511720 - B3 SINE B2 -26 190 6 1 752 331 342 50 41 chr6 22005320 22005661 -127511376 - L2a LINE L2 -396 3023 2680 1 752 297 0 0 0 chr6 22006196 22006229 -127510808 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 1 752 288 0 0 0 chr6 22006571 22006603 -127510434 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 752 24 67 0 0 chr6 22006831 22006876 -127510161 + AT_rich Low_complexity Low_complexity 1 45 0 1 752 1596 234 8 22 chr6 22006877 22007240 -127509797 - ORR1D1 LTR MaLR 0 374 17 1 752 255 114 0 0 chr6 22007337 22007381 -127509656 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 752 220 231 19 0 chr6 22007395 22007447 -127509590 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2 752 873 271 29 25 chr6 22007450 22007692 -127509345 - B4A SINE B4 -2 290 48 2 752 413 89 0 15 chr6 22008965 22009033 -127508004 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 2 752 375 215 0 0 chr6 22009568 22009689 -127507348 + (TCTA)n Simple_repeat Simple_repeat 3 123 0 2 752 761 93 0 8 chr6 22009694 22009824 -127507213 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 2 752 1294 220 162 14 chr6 22010344 22010695 -127506342 + MTD LTR MaLR 13 415 -4 2 752 514 320 18 76 chr6 22011326 22011491 -127505546 - ID_B1 SINE B4 -72 220 7 2 752 268 264 0 111 chr6 22011491 22011572 -127505465 - tRNA-Ala-GCY_ tRNA tRNA -3 72 1 2 752 285 241 17 0 chr6 22011516 22011574 -127505463 - ID4_ SINE ID -20 63 5 2 752 375 298 446 36 chr6 22011608 22011812 -127505225 + B4A SINE B4 5 292 0 2 752 291 114 0 0 chr6 22012283 22012327 -127504710 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 752 244 303 59 29 chr6 22012672 22012774 -127504263 + PB1D10 SINE Alu 2 106 -11 3 752 523 357 72 7 chr6 22013619 22013884 -127503153 - LTR40a LTR ERVL -4 515 233 3 752 728 250 74 5 chr6 22013884 22014073 -127502964 + ID_B1 SINE B4 3 204 -20 3 752 332 366 42 14 chr6 22014081 22014225 -127502812 - LTR40a LTR ERVL -358 161 14 3 752 677 153 8 0 chr6 22015014 22015138 -127501899 + GA-rich Low_complexity Low_complexity 1 125 0 3 752 968 43 35 0 chr6 22015138 22015279 -127501758 + (GAAAA)n Simple_repeat Simple_repeat 5 150 0 3 752 2532 94 36 44 chr6 22015280 22015670 -127501367 + L1_Mus3 LINE L1 6249 6635 -3 3 752 564 56 0 0 chr6 22015677 22015749 -127501288 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 3 752 1893 204 34 97 chr6 22016170 22016760 -127500277 - RLTR31_Mur LTR ERVK 0 553 1 3 752 837 253 121 12 chr6 22017031 22017271 -127499766 + MTEa LTR MaLR 58 323 -56 3 752 395 295 121 60 chr6 22017272 22017669 -127499368 + L1M3 LINE L1 4513 4933 -1207 4 752 192 274 0 0 chr6 22017699 22017748 -127499289 + MIR SINE MIR 64 112 -156 4 752 1456 80 17 0 chr6 22017783 22017959 -127499078 + B2_Mm2 SINE B2 3 181 -14 4 752 4435 71 0 28 chr6 22017959 22018520 -127498517 - L1Md_F2 LINE L1 -12 6570 6025 4 752 221 30 0 57 chr6 22018954 22018989 -127498048 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 4 752 1961 164 52 11 chr6 22019738 22019763 -127497274 - RLTR20D LTR ERVK -64 504 477 4 752 216 0 0 0 chr6 22019763 22019787 -127497250 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 11 1961 164 52 11 chr6 22019787 22020142 -127496895 - RLTR20D LTR ERVK -92 476 109 4 753 961 146 0 7 chr6 22020125 22020277 -127496760 + MTD LTR MaLR 257 407 -12 4 753 614 279 131 24 chr6 22020278 22020484 -127496553 + B4A SINE B4 65 292 0 4 753 621 224 0 0 chr6 22020501 22020662 -127496375 + (CA)n Simple_repeat Simple_repeat 2 162 0 4 753 611 196 7 0 chr6 22020709 22020857 -127496180 + (CA)n Simple_repeat Simple_repeat 2 150 0 4 753 228 135 0 0 chr6 22021640 22021677 -127495360 + (T)n Simple_repeat Simple_repeat 1 37 0 5 753 711 228 23 2 chr6 22022069 22022251 -127494786 - ORR1C2 LTR MaLR -2 382 174 5 753 1837 170 86 17 chr6 22023088 22023447 -127493590 - ORR1C2 LTR MaLR 0 384 1 5 753 901 320 66 25 chr6 22023469 22023612 -127493425 - MTD LTR MaLR -35 384 226 5 753 567 0 0 0 chr6 22023612 22023675 -127493362 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 5 753 901 320 66 25 chr6 22023675 22023896 -127493141 - MTD LTR MaLR -194 225 6 5 753 398 256 39 69 chr6 22023898 22024028 -127493009 + B4A SINE B4 164 289 -3 5 753 699 151 26 40 chr6 22024071 22024223 -127492814 + URR1A DNA MER1_type 77 226 0 5 753 427 130 50 0 chr6 22024479 22024579 -127492458 + CT-rich Low_complexity Low_complexity 2 106 0 5 753 191 75 0 70 chr6 22025851 22025894 -127491143 + (T)n Simple_repeat Simple_repeat 1 40 0 5 753 440 293 50 50 chr6 22025985 22026125 -127490912 - RSINE1 SINE B4 -23 142 3 5 753 22 70 0 0 chr6 22026647 22026690 -127490347 + AT_rich Low_complexity Low_complexity 1 43 0 6 753 1456 219 116 36 chr6 22026766 22027154 -127489883 - MTD LTR MaLR 0 419 1 6 753 3122 83 2 5 chr6 22027279 22027676 -127489361 - MTA_Mm LTR MaLR 0 396 1 6 753 279 204 19 0 chr6 22027705 22027759 -127489278 + ID4_ SINE ID 3 57 -26 6 753 272 132 217 14 chr6 22027759 22027774 -127489263 + ID SINE ID 3 85 -139 6 753 24 0 0 0 chr6 22030440 22030464 -127486573 + AT_rich Low_complexity Low_complexity 1 24 0 6 753 1254 256 131 18 chr6 22030464 22030914 -127486123 - Lx8 LINE L1 -2 7471 6971 6 753 244 203 35 139 chr6 22030995 22031081 -127485956 + MADE2 DNA Mariner 4 80 0 6 753 261 346 0 0 chr6 22033064 22033083 -127483954 - BC1_Mm scRNA scRNA -64 88 8 6 753 281 306 0 0 chr6 22033083 22033145 -127483892 - tRNA-Ala-GCY_ tRNA tRNA -12 63 2 6 753 588 255 70 25 chr6 22033161 22033318 -127483719 + RSINE1 SINE B4 1 164 -1 7 753 365 86 11 79 chr6 22033472 22033649 -127483388 + (TAA)n Simple_repeat Simple_repeat 3 167 0 7 753 235 395 32 11 chr6 22033881 22034068 -127482969 + L1M5 LINE L1 5523 5713 -527 7 753 1081 77 64 6 chr6 22035355 22035512 -127481525 + B2_Mm2 SINE B2 2 167 -28 7 753 1224 75 0 0 chr6 22035520 22035666 -127481371 - B1_Mm SINE Alu -1 146 1 7 753 3086 286 111 37 chr6 22035987 22036772 -127480265 - Lx8 LINE L1 -3 7470 6611 7 753 3740 15 2 0 chr6 22036772 22037167 -127479870 - MTA_Mm LTR MaLR 0 396 1 7 753 3086 286 111 37 chr6 22037167 22037719 -127479318 - Lx8 LINE L1 -863 6610 6034 7 753 290 320 52 67 chr6 22040043 22040177 -127476860 - MLT2B1 LTR ERVL -163 357 226 7 753 320 313 114 43 chr6 22040456 22040596 -127476441 - RSINE1 SINE B4 -15 150 1 7 753 396 59 0 0 chr6 22040601 22040652 -127476385 + (ATG)n Simple_repeat Simple_repeat 3 53 0 7 753 432 0 0 0 chr6 22040652 22040700 -127476337 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 753 493 284 79 0 chr6 22040710 22040837 -127476200 - RSINE1 SINE B4 -15 150 14 8 753 388 137 0 76 chr6 22041403 22041428 -127475609 + ORR1D1 LTR MaLR 3 27 -347 8 753 2581 98 0 18 chr6 22041428 22041761 -127475276 - ORR1A2 LTR MaLR 0 327 1 8 753 388 137 0 76 chr6 22041761 22041814 -127475223 + ORR1D1 LTR MaLR 28 75 -299 8 753 330 26 0 0 chr6 22042236 22042275 -127474762 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 753 1487 201 34 101 chr6 22044715 22045103 -127471934 + ORR1D2 LTR MaLR 1 362 -8 8 753 459 0 0 0 chr6 22045425 22045476 -127471561 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 753 734 217 35 14 chr6 22045491 22045636 -127471401 - B3A SINE B2 -48 150 3 8 753 411 21 0 0 chr6 22045783 22045831 -127471206 + (TTATA)n Simple_repeat Simple_repeat 1 48 0 8 753 232 279 50 75 chr6 22046637 22046757 -127470280 - PB1D7 SINE Alu -1 119 3 8 753 258 276 109 26 chr6 22046758 22046914 -127470123 - L1MA6 LINE L1 -150 6150 5982 9 753 414 57 0 0 chr6 22048621 22048674 -127468363 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 9 753 597 200 79 101 chr6 22050101 22050240 -127466797 + B1_Mur3 SINE Alu 1 136 -13 9 753 1224 101 0 0 chr6 22050246 22050424 -127466613 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 9 753 2439 186 30 48 chr6 22050678 22051402 -127465635 - L1_Mur1 LINE L1 -2505 1407 702 9 753 563 297 41 29 chr6 22051625 22051892 -127465145 - Lx7 LINE L1 -1805 5891 5622 9 753 330 314 122 86 chr6 22052438 22052516 -127464521 + MLT1C LTR MaLR 23 116 -389 9 753 1308 211 116 35 chr6 22052516 22052860 -127464177 - ORR1D1 LTR MaLR -2 372 1 9 753 330 296 87 105 chr6 22052860 22053210 -127463827 + MLT1C LTR MaLR 114 458 -9 9 753 24 32 0 0 chr6 22054029 22054060 -127462977 + AT_rich Low_complexity Low_complexity 1 31 0 9 753 234 0 0 0 chr6 22054184 22054210 -127462827 + (A)n Simple_repeat Simple_repeat 1 26 0 9 753 234 365 16 0 chr6 22054711 22054837 -127462200 + Tigger13a DNA MER2_type 563 690 -81 1 753 447 303 40 70 chr6 22055286 22055485 -127461552 - B3A SINE B2 -4 194 2 1 753 19190 53 6 0 chr6 22055766 22058844 -127458193 - L1Md_F2 LINE L1 0 6582 3493 1 753 721 305 15 15 chr6 22058844 22059047 -127457990 - B4A SINE B4 -83 209 7 1 753 1555 98 42 0 chr6 22060001 22060215 -127456822 - L1_Mus3 LINE L1 -468 6170 5948 1 753 7166 83 62 0 chr6 22060212 22061869 -127455168 + L1_Mus3 LINE L1 4875 6631 -7 1 753 801 301 114 3 chr6 22062112 22062420 -127454617 - MTEb LTR MaLR -2 377 36 1 753 800 147 15 0 chr6 22062421 22062557 -127454480 - URR1B DNA MER1_type 0 225 88 1 753 741 139 0 0 chr6 22062727 22062849 -127454188 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1 753 2493 205 15 8 chr6 22062856 22063334 -127453703 - Lx5 LINE L1 -36 7014 6534 1 753 252 0 0 0 chr6 22063402 22063430 -127453607 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 753 878 320 98 32 chr6 22064516 22065258 -127451779 - L1MB2 LINE L1 0 6171 5381 1 753 190 333 62 39 chr6 22065798 22065926 -127451111 - L2c LINE L2 0 3387 3257 1 753 2686 111 67 7 chr6 22066485 22066903 -127450134 - BGLII_A LTR ERVK -1 444 2 1 753 468 0 0 0 chr6 22067509 22067561 -127449476 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 753 261 0 0 0 chr6 22067561 22067589 -127449448 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 753 198 0 0 0 chr6 22069318 22069340 -127447697 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1 753 1349 39 10 0 chr6 22069617 22069822 -127447215 + (CAGAGA)n Simple_repeat Simple_repeat 1 207 0 1 753 1349 34 9 0 chr6 22069846 22070058 -127446979 + (CAGAGA)n Simple_repeat Simple_repeat 1 214 0 1 753 211 184 0 0 chr6 22070059 22070097 -127446940 + GA-rich Low_complexity Low_complexity 4 41 0 1 753 340 305 32 0 chr6 22070324 22070419 -127446618 - PB1D10 SINE Alu -5 112 15 1 753 533 0 0 0 chr6 22072030 22072093 -127444944 + L1Md_T LINE L1 6520 6582 0 1 753 207 0 0 0 chr6 22072954 22072977 -127444060 + (T)n Simple_repeat Simple_repeat 1 23 0 1 753 252 0 0 0 chr6 22073512 22073540 -127443497 + (T)n Simple_repeat Simple_repeat 1 28 0 1 753 369 0 0 0 chr6 22075025 22075066 -127441971 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 753 294 229 0 0 chr6 22075066 22075136 -127441901 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 753 36116 37 0 0 chr6 22075161 22080809 -127436228 + L1Md_T LINE L1 1 5589 -297 1 753 9590 5 0 0 chr6 22080809 22081805 -127435232 + L1Md_T LINE L1 5590 6585 0 1 753 618 351 50 0 chr6 22081827 22082049 -127434988 - B4 SINE B4 -20 272 40 1 753 198 0 0 0 chr6 22082419 22082441 -127434596 + (A)n Simple_repeat Simple_repeat 1 22 0 1 753 26 30 0 0 chr6 22082833 22082866 -127434171 + AT_rich Low_complexity Low_complexity 1 33 0 1 753 24 0 0 0 chr6 22085017 22085041 -127431996 + AT_rich Low_complexity Low_complexity 1 24 0 1 753 250 274 14 79 chr6 22085072 22085206 -127431831 - MIR SINE MIR -26 242 115 1 753 1016 263 186 5 chr6 22086578 22086635 -127430402 - Lx6 LINE L1 -26 7434 7376 1 753 351 0 0 0 chr6 22086635 22086674 -127430363 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 753 1016 265 168 7 chr6 22086674 22087084 -127429953 - Lx6 LINE L1 -85 7375 6949 1 753 649 301 79 61 chr6 22087109 22087316 -127429721 - Lx6 LINE L1 -673 6377 6151 1 753 4926 41 4 0 chr6 22087316 22087875 -127429162 - L1Md_F2 LINE L1 0 6582 6022 1 753 649 295 50 65 chr6 22087875 22088037 -127429000 - Lx6 LINE L1 -1310 6150 5982 1 753 610 289 34 53 chr6 22088276 22088484 -127428553 + B4 SINE B4 2 205 -87 1 753 247 218 81 0 chr6 22088487 22088574 -127428463 + (CAGAGA)n Simple_repeat Simple_repeat 2 95 0 1 753 24 67 0 0 chr6 22088599 22088644 -127428393 + AT_rich Low_complexity Low_complexity 1 45 0 1 753 641 238 122 113 chr6 22089397 22089601 -127427436 - B3 SINE B2 -6 210 5 1 753 667 169 40 60 chr6 22089750 22089901 -127427136 + B1_Mur4 SINE Alu 3 150 0 1 753 928 143 12 0 chr6 22089910 22090078 -127426959 + GA-rich Low_complexity Low_complexity 3 172 0 1 753 27 29 0 0 chr6 22090102 22090136 -127426901 + AT_rich Low_complexity Low_complexity 1 34 0 1 753 409 276 9 9 chr6 22091332 22091438 -127425599 + PB1D10 SINE Alu 11 116 -1 1 753 710 78 10 0 chr6 22091890 22091992 -127425045 + (TA)n Simple_repeat Simple_repeat 2 104 0 1 753 2772 120 2 0 chr6 22092702 22093102 -127423935 - Lx2A1 LINE L1 0 7008 6608 1 753 241 324 0 14 chr6 22094620 22094689 -127422348 + ID SINE ID 3 70 -154 1 753 205 269 21 21 chr6 22094713 22094808 -127422229 + GA-rich Low_complexity Low_complexity 1 95 0 1 753 1016 112 12 0 chr6 22094874 22095035 -127422002 + (TTCC)n Simple_repeat Simple_repeat 3 165 0 1 753 1087 224 43 92 chr6 22095037 22095342 -127421695 - RLTR16 LTR ERVK -116 389 100 1 753 360 0 0 0 chr6 22095384 22095424 -127421613 + (TTA)n Simple_repeat Simple_repeat 1 40 0 1 753 546 16 0 0 chr6 22096032 22096095 -127420942 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 753 33 66 0 0 chr6 22096831 22096892 -127420145 + AT_rich Low_complexity Low_complexity 1 61 0 1 753 326 267 169 64 chr6 22096938 22097174 -127419863 + L1ME3 LINE L1 5879 6139 -23 1 753 837 289 50 80 chr6 22097717 22098093 -127418944 - MTEa LTR MaLR -5 374 10 1 753 714 297 92 68 chr6 22098516 22098884 -127418153 - MLT1A1 LTR MaLR -6 402 26 1 753 29 28 0 0 chr6 22099305 22099341 -127417696 + AT_rich Low_complexity Low_complexity 1 36 0 1 753 226 200 0 0 chr6 22100893 22100933 -127416104 - Tigger5 DNA MER2_type 0 2406 2367 1 753 649 262 21 28 chr6 22100974 22101119 -127415918 + RSINE1 SINE B4 2 145 -20 1 753 3230 36 2 120 chr6 22101472 22101914 -127415123 + RLTR10 LTR ERVK 1 390 0 1 753 919 258 115 13 chr6 22102349 22102663 -127414374 - RMER15 LTR ERVL -2 573 228 1 753 652 127 25 0 chr6 22104116 22104234 -127412803 + CT-rich Low_complexity Low_complexity 4 124 0 1 753 307 352 111 0 chr6 22104250 22104449 -127412588 - MIR SINE MIR -11 251 31 1 753 22 70 0 0 chr6 22104541 22104584 -127412453 + AT_rich Low_complexity Low_complexity 1 43 0 1 753 447 19 0 0 chr6 22104610 22104662 -127412375 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 753 278 247 103 13 chr6 22104662 22104740 -127412297 - RSINE1 SINE B4 -51 114 30 1 753 1044 157 28 0 chr6 22104776 22104840 -127412197 + URR1A DNA MER1_type 44 107 -119 1 753 7038 36 0 0 chr6 22104840 22105623 -127411414 - L1Md_A LINE L1 -1 6581 5799 1 753 1044 157 28 0 chr6 22105623 22105736 -127411301 + URR1A DNA MER1_type 108 224 -2 1 753 1995 315 30 35 chr6 22106510 22107220 -127409817 - Lx8 LINE L1 -178 7295 6590 1 753 297 51 0 0 chr6 22109165 22109204 -127407833 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 753 864 337 31 82 chr6 22109534 22109951 -127407086 - MLT1E3 LTR MaLR -8 616 221 1 753 340 352 54 80 chr6 22110769 22111118 -127405919 - MER102b DNA MER1_type -1 340 1 1 753 287 316 32 0 chr6 22111915 22112010 -127405027 - MLT1N2 LTR MaLR -2 560 463 1 753 206 328 78 8 chr6 22113094 22113223 -127403814 - MER5A DNA MER1_type -4 185 48 1 753 462 192 19 19 chr6 22113241 22113400 -127403637 + (TA)n Simple_repeat Simple_repeat 1 159 0 1 753 235 150 83 0 chr6 22114007 22114067 -127402970 + (TTATA)n Simple_repeat Simple_repeat 1 65 0 1 753 492 276 97 0 chr6 22114502 22114687 -127402350 + B3 SINE B2 1 203 -13 1 753 779 214 7 0 chr6 22114698 22114843 -127402194 + B1_Mus1 SINE Alu 3 148 0 1 753 180 219 0 0 chr6 22114870 22114911 -127402126 + GA-rich Low_complexity Low_complexity 3 43 0 1 753 246 243 57 0 chr6 22115171 22115241 -127401796 + CT-rich Low_complexity Low_complexity 3 76 0 1 753 201 286 18 0 chr6 22115675 22115731 -127401306 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 1 753 215 328 41 49 chr6 22115731 22115853 -127401184 + MIRm SINE MIR 34 154 -122 1 753 207 0 0 0 chr6 22116183 22116206 -127400831 + (T)n Simple_repeat Simple_repeat 1 23 0 1 753 646 0 21 31 chr6 22118198 22118295 -127398742 + (GGAGA)n Simple_repeat Simple_repeat 2 97 0 1 753 26 50 0 0 chr6 22118753 22118793 -127398244 + AT_rich Low_complexity Low_complexity 1 40 0 1 753 359 319 5 3 chr6 22119409 22119576 -127397461 - L1MA4 LINE L1 -1546 5927 5728 1 753 571 305 13 62 chr6 22119580 22119807 -127397230 + B4A SINE B4 1 216 -76 1 753 252 307 22 22 chr6 22119885 22119975 -127397062 - MER58A DNA MER1_type -97 127 38 1 753 180 0 0 0 chr6 22120099 22120119 -127396918 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 753 340 309 0 24 chr6 22120855 22121024 -127396013 + (TA)n Simple_repeat Simple_repeat 2 166 0 1 753 2087 109 45 28 chr6 22121245 22121604 -127395433 - IAPLTR1_Mm LTR ERVK -2 365 1 1 753 8927 34 9 0 chr6 22121604 22122631 -127394406 - IAPEz-int LTR ERVK 0 6481 5446 1 753 1780 10 0 0 chr6 22122630 22122823 -127394214 - IAPEz-int LTR ERVK -2764 3717 3525 1 753 950 80 24 0 chr6 22122823 22122948 -127394089 - IAPEz-int LTR ERVK -2770 4910 4783 1 753 1869 111 4 4 chr6 22122943 22123205 -127393832 - IAPEz-int LTR ERVK -5183 2497 2236 1 753 454 66 0 32 chr6 22123194 22123257 -127393780 - IAPEz-int LTR ERVK -5062 1419 1359 1 753 3497 65 4 44 chr6 22123257 22124017 -127393020 - IAPEz-int LTR ERVK -5819 662 9 1 753 2092 109 45 28 chr6 22124017 22124376 -127392661 - IAPLTR1_Mm LTR ERVK -2 365 1 1 753 513 296 194 9 chr6 22125186 22125523 -127391514 - MTD LTR MaLR -13 406 8 1 753 517 180 36 9 chr6 22127070 22127182 -127389855 + ORR1C2 LTR MaLR 269 383 -1 1 753 434 289 6 25 chr6 22127387 22127550 -127389487 + RSINE1 SINE B4 3 162 -3 1 753 235 141 56 0 chr6 22127550 22127621 -127389416 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 1 753 387 0 0 0 chr6 22127690 22127733 -127389304 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 753 320 256 112 32 chr6 22129463 22129588 -127387449 + B4 SINE B4 2 136 -156 1 753 367 259 12 0 chr6 22130142 22130223 -127386814 + ID4 SINE ID 2 83 0 1 753 21 0 0 0 chr6 22131865 22131886 -127385151 + AT_rich Low_complexity Low_complexity 1 21 0 1 753 371 113 16 0 chr6 22132461 22132523 -127384514 + (TCTCC)n Simple_repeat Simple_repeat 4 66 0 1 753 435 260 3 6 chr6 22132580 22132694 -127384343 - B4 SINE B4 -4 288 177 1 753 180 299 136 27 chr6 22132911 22133021 -127384016 + L2c LINE L2 3039 3160 -227 2 753 230 262 0 121 chr6 22133210 22133301 -127383736 + ID4 SINE ID 4 83 0 2 753 545 52 13 0 chr6 22133413 22133490 -127383547 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 753 611 333 68 48 chr6 22133949 22134349 -127382688 - MLT1A1 LTR MaLR 0 408 1 2 753 500 240 8 16 chr6 22134363 22134486 -127382551 + Lx9 LINE L1 7168 7289 -355 2 753 1107 105 0 0 chr6 22135184 22135422 -127381615 + (GAA)n Simple_repeat Simple_repeat 1 238 0 2 753 198 0 0 0 chr6 22136621 22136643 -127380394 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 2 753 22 0 0 0 chr6 22138061 22138083 -127378954 + AT_rich Low_complexity Low_complexity 1 22 0 2 753 207 0 0 0 chr6 22138154 22138177 -127378860 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 753 405 0 0 0 chr6 22138644 22138689 -127378348 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 753 451 384 9 14 chr6 22138712 22138931 -127378106 - B4A SINE B4 -18 274 57 2 753 22 70 0 0 chr6 22139235 22139278 -127377759 + AT_rich Low_complexity Low_complexity 1 43 0 2 753 662 153 5 59 chr6 22140323 22140510 -127376527 + CT-rich Low_complexity Low_complexity 4 180 0 2 753 189 0 0 0 chr6 22140664 22140685 -127376352 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 753 286 310 52 26 chr6 22141145 22141261 -127375776 - MIR SINE MIR -82 180 62 2 753 357 227 65 0 chr6 22141726 22141814 -127375223 - ID_B1 SINE B4 -197 95 3 2 753 23 54 0 0 chr6 22141919 22141956 -127375081 + AT_rich Low_complexity Low_complexity 1 37 0 2 753 2315 160 49 20 chr6 22141962 22142371 -127374666 - MTC LTR MaLR 0 421 1 2 753 216 269 0 56 chr6 22142536 22142607 -127374430 + GA-rich Low_complexity Low_complexity 5 71 0 2 753 260 340 9 45 chr6 22142619 22142730 -127374307 + ID_B1 SINE B4 104 210 -14 2 753 670 48 0 79 chr6 22142730 22142844 -127374193 + B1_Mus2 SINE Alu 43 147 0 2 753 204 40 0 0 chr6 22143191 22143216 -127373821 + (T)n Simple_repeat Simple_repeat 1 25 0 2 753 5236 53 3 5 chr6 22143219 22143868 -127373169 - L1Md_F2 LINE L1 -1 6581 5934 2 753 23 0 0 0 chr6 22144850 22144873 -127372164 + AT_rich Low_complexity Low_complexity 1 23 0 2 753 458 321 5 113 chr6 22144940 22145161 -127371876 - B3A SINE B2 -1 197 1 2 753 3525 71 0 0 chr6 22145199 22145638 -127371399 - L1_Mus1 LINE L1 0 6567 6129 2 753 22 0 0 0 chr6 22145638 22145660 -127371377 + AT_rich Low_complexity Low_complexity 1 22 0 2 753 433 304 46 26 chr6 22145664 22145816 -127371221 + RSINE1 SINE B4 3 157 -8 2 753 636 125 0 0 chr6 22145848 22145976 -127371061 + (GA)n Simple_repeat Simple_repeat 2 129 0 2 753 414 288 24 15 chr6 22146082 22146252 -127370785 - MER33 DNA MER1_type -195 129 2 2 753 2168 142 32 3 chr6 22146813 22147188 -127369849 - ORR1B1 LTR MaLR -8 386 1 2 753 237 301 53 11 chr6 22148538 22148632 -127368405 - L1MA9 LINE L1 -46 6266 6169 2 753 990 159 90 19 chr6 22149339 22149550 -127367487 + URR1A DNA MER1_type 1 226 0 2 753 1474 252 52 59 chr6 22150558 22151035 -127366002 + Lx9 LINE L1 7014 7487 -157 2 94 875 182 121 5 chr6 22151064 22151263 -127365774 - URR1A DNA MER1_type -4 222 1 2 754 732 261 34 6 chr6 22151336 22151513 -127365524 + B3A SINE B2 6 187 -11 2 754 560 148 0 9 chr6 22153369 22153478 -127363559 + GA-rich Low_complexity Low_complexity 1 108 0 2 754 633 249 98 33 chr6 22153498 22153681 -127363356 + ID_B1 SINE B4 29 223 -1 2 754 414 254 36 174 chr6 22154441 22154665 -127362372 - B3A SINE B2 -3 195 3 2 754 223 246 98 0 chr6 22156317 22156378 -127360659 + L2c LINE L2 3258 3324 -63 2 754 256 266 36 101 chr6 22156677 22156815 -127360222 - MamSINE1 SINE tRNA -55 235 107 2 754 318 333 51 22 chr6 22156927 22157065 -127359972 + MIRb SINE MIR 19 160 -108 2 754 315 0 0 0 chr6 22157289 22157324 -127359713 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 754 553 203 126 6 chr6 22157764 22157947 -127359090 - L1MC4a LINE L1 -225 7657 7453 2 754 509 263 25 112 chr6 22158092 22158289 -127358748 - B3A SINE B2 -17 181 2 2 754 186 382 0 0 chr6 22158819 22158887 -127358150 - MIRm SINE MIR -1 275 208 2 754 429 20 0 0 chr6 22159103 22159153 -127357884 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 754 220 292 0 0 chr6 22159159 22159207 -127357830 - RSINE1 SINE B4 -22 143 96 2 754 423 309 28 80 chr6 22159237 22159413 -127357624 - B4A SINE B4 -118 174 8 2 754 288 70 0 0 chr6 22159426 22159469 -127357568 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 754 7759 72 17 0 chr6 22159483 22160634 -127356403 - L1_Mus1 LINE L1 0 6654 5392 2 754 265 329 100 27 chr6 22160819 22160969 -127356068 - MLT1J-int LTR MaLR -558 829 669 2 754 521 68 14 0 chr6 22161432 22161506 -127355531 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 754 812 254 349 50 chr6 22162726 22163021 -127354016 - Lx8 LINE L1 -352 7121 6739 2 754 499 274 5 151 chr6 22164082 22164267 -127352770 + RSINE1 SINE B4 2 159 -6 2 754 495 48 0 0 chr6 22165151 22165213 -127351824 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 754 324 70 0 0 chr6 22165226 22165269 -127351768 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 754 491 204 39 0 chr6 22165333 22165436 -127351601 - B4 SINE B4 -51 241 135 2 754 180 265 95 29 chr6 22165846 22165951 -127351086 + L2c LINE L2 3122 3233 -154 2 754 617 274 7 0 chr6 22166081 22166227 -127350810 - RSINE1 SINE B4 -17 148 2 2 754 291 121 0 0 chr6 22166241 22166299 -127350738 + (CATA)n Simple_repeat Simple_repeat 3 60 0 2 754 24 0 0 0 chr6 22166561 22166585 -127350452 + AT_rich Low_complexity Low_complexity 1 24 0 2 754 233 299 84 17 chr6 22167619 22167738 -127349299 + Charlie7a DNA MER1_type 113 239 -33 2 754 304 97 16 16 chr6 22169166 22169229 -127347808 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 754 783 216 142 0 chr6 22169383 22169559 -127347478 - B3 SINE B2 -15 201 1 2 754 206 291 146 49 chr6 22169715 22169838 -127347199 + MIR3 SINE MIR 50 184 -24 2 754 530 29 15 0 chr6 22169941 22170009 -127347028 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 2 754 359 323 96 15 chr6 22170396 22170531 -127346506 - MER5B DNA MER1_type 0 178 33 2 754 188 271 57 0 chr6 22170780 22170850 -127346187 + MIR SINE MIR 168 241 -21 2 754 226 389 44 0 chr6 22173604 22173717 -127343320 + L2a LINE L2 3299 3416 -10 2 754 272 288 0 17 chr6 22173727 22173787 -127343250 + ID4_ SINE ID 14 72 -11 2 754 2505 151 43 9 chr6 22173822 22174263 -127342774 + RLTR11A LTR ERVK 73 528 0 2 754 250 253 131 12 chr6 22174716 22174800 -127342237 - MLT1B LTR MaLR -11 379 286 2 754 315 122 0 0 chr6 22175666 22175715 -127341322 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 754 286 163 0 0 chr6 22177643 22177692 -127339345 - Lx9 LINE L1 -943 6701 6653 2 754 22 0 0 0 chr6 22177770 22177792 -127339245 + AT_rich Low_complexity Low_complexity 1 22 0 2 754 411 234 61 25 chr6 22177853 22178050 -127338987 - Lx7 LINE L1 -1562 6134 5931 2 754 1569 273 32 147 chr6 22178052 22179221 -127337816 - Lx8 LINE L1 -1680 5793 4756 2 754 779 189 197 16 chr6 22179963 22180146 -127336891 + B3 SINE B2 1 216 0 2 754 323 200 85 24 chr6 22180971 22181053 -127335984 + PB1D10 SINE Alu 29 115 -2 2 754 600 272 125 39 chr6 22181089 22181448 -127335589 + MLT1B LTR MaLR 1 390 0 2 754 386 295 15 23 chr6 22181525 22181657 -127335380 + ID_B1 SINE B4 86 216 -8 2 754 238 320 144 0 chr6 22182591 22182688 -127334349 + MIRc SINE MIR 30 140 -128 2 754 21 0 0 0 chr6 22183378 22183399 -127333638 + AT_rich Low_complexity Low_complexity 1 21 0 2 754 21 0 0 0 chr6 22184099 22184120 -127332917 + AT_rich Low_complexity Low_complexity 1 21 0 2 754 332 306 9 9 chr6 22184212 22184321 -127332716 + PB1D10 SINE Alu 1 109 -8 2 754 270 0 0 0 chr6 22185075 22185105 -127331932 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 754 441 0 0 0 chr6 22185105 22185153 -127331884 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 754 206 330 9 62 chr6 22186189 22186302 -127330735 + L2b LINE L2 3050 3156 -219 2 754 260 293 180 32 chr6 22186706 22186956 -127330081 - LTR16B LTR ERVL -138 325 39 2 754 1043 80 13 0 chr6 22188066 22188216 -127328821 + L1Md_F2 LINE L1 6419 6570 -12 2 754 552 252 14 27 chr6 22188230 22188377 -127328660 - RMER15 LTR ERVL -139 436 292 2 754 279 0 0 0 chr6 22189090 22189121 -127327916 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 754 593 27 0 13 chr6 22189966 22190042 -127326995 + (GAA)n Simple_repeat Simple_repeat 2 76 0 2 754 203 158 0 0 chr6 22190049 22190087 -127326950 + A-rich Low_complexity Low_complexity 1 38 0 2 754 497 362 59 25 chr6 22190224 22190714 -127326323 + L5 LINE RTE 101 607 -1658 2 754 244 217 11 11 chr6 22190992 22191085 -127325952 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 754 2485 247 79 40 chr6 22191225 22192102 -127324935 - Lx9 LINE L1 -5 7639 6729 2 754 209 33 33 0 chr6 22192678 22192708 -127324329 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 754 454 276 154 12 chr6 22193042 22193211 -127323826 + B3 SINE B2 24 216 0 2 754 663 339 71 41 chr6 22193372 22193864 -127323173 - L2 LINE L2 -757 2662 2156 2 754 2239 219 108 55 chr6 22194559 22195170 -127321867 + Lx7 LINE L1 6905 7552 -144 3 754 207 0 0 0 chr6 22195170 22195193 -127321844 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 754 2239 219 108 55 chr6 22195193 22195314 -127321723 + Lx7 LINE L1 7553 7675 -21 3 754 189 0 0 0 chr6 22195377 22195398 -127321639 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 754 474 276 19 0 chr6 22196373 22196478 -127320559 + PB1 SINE Alu 1 107 -20 3 754 192 77 0 0 chr6 22196515 22196541 -127320496 + (TTAG)n Simple_repeat Simple_repeat 2 27 0 3 754 239 304 82 71 chr6 22196632 22196717 -127320320 - LTR86B1 LTR ERVL -389 104 19 3 754 794 177 13 26 chr6 22197198 22197349 -127319688 - B1_Mur3 SINE Alu 0 149 1 3 754 307 311 79 57 chr6 22197758 22197898 -127319139 - B1F SINE Alu -2 147 5 3 754 1189 196 5 0 chr6 22198173 22198397 -127318640 + URR1B DNA MER1_type 1 225 0 3 754 24 0 0 0 chr6 22198502 22198526 -127318511 + AT_rich Low_complexity Low_complexity 1 24 0 3 754 296 0 51 0 chr6 22199431 22199470 -127317567 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 754 189 240 59 20 chr6 22200759 22200810 -127316227 + L2b LINE L2 3265 3317 -58 3 754 490 275 107 16 chr6 22201287 22201409 -127315628 - RSINE1 SINE B4 -8 157 25 3 754 225 262 31 47 chr6 22202254 22202266 -127314771 + ID4_ SINE ID 3 65 -18 3 754 231 231 39 0 chr6 22202266 22202318 -127314719 + tRNA-Ala-GCY_ tRNA tRNA 6 59 -16 3 754 426 305 0 8 chr6 22202328 22202457 -127314580 + (CA)n Simple_repeat Simple_repeat 2 129 0 3 754 360 190 0 0 chr6 22202520 22202599 -127314438 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 754 22 56 0 0 chr6 22206003 22206039 -127310998 + AT_rich Low_complexity Low_complexity 1 36 0 3 754 766 232 41 50 chr6 22206463 22206681 -127310356 - B3 SINE B2 0 216 1 3 754 3658 145 72 15 chr6 22206920 22207577 -127309460 - Lx2B LINE L1 -3 6997 6304 3 754 237 33 0 0 chr6 22207953 22207983 -127309054 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 754 444 51 0 0 chr6 22208588 22208647 -127308390 + (CTTG)n Simple_repeat Simple_repeat 1 59 0 3 754 315 293 101 0 chr6 22208648 22208747 -127308290 - PB1D10 SINE Alu -8 109 1 3 754 207 100 0 0 chr6 22209414 22209444 -127307593 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 3 754 336 346 9 36 chr6 22210068 22210179 -127306858 - PB1D10 SINE Alu -8 109 2 3 754 1284 51 6 11 chr6 22210180 22210359 -127306678 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 3 754 313 99 23 58 chr6 22210363 22210398 -127306639 + polypurine Low_complexity Low_complexity 3 38 0 3 754 1190 87 6 11 chr6 22210398 22210579 -127306458 + (GAAA)n Simple_repeat Simple_repeat 1 183 -184 3 754 1190 87 6 11 chr6 22210588 22210768 -127306269 + (GAAA)n Simple_repeat Simple_repeat 184 367 0 3 754 313 99 23 58 chr6 22210768 22210808 -127306229 + polypurine Low_complexity Low_complexity 47 83 0 3 754 22 56 0 0 chr6 22212425 22212461 -127304576 + AT_rich Low_complexity Low_complexity 1 36 0 3 754 342 0 0 0 chr6 22213227 22213265 -127303772 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 754 297 0 0 0 chr6 22213265 22213298 -127303739 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 754 388 281 79 0 chr6 22213802 22213891 -127303146 - B3A SINE B2 -79 119 24 3 754 2147 203 53 34 chr6 22213891 22214422 -127302615 - RMER19C LTR ERVK 0 611 71 3 754 400 244 90 34 chr6 22214517 22214695 -127302342 - L1MB8 LINE L1 -112 6066 5879 3 754 288 0 0 0 chr6 22217434 22217466 -127299571 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 754 38 39 0 0 chr6 22219228 22219280 -127297757 + AT_rich Low_complexity Low_complexity 1 52 0 3 754 1155 54 0 0 chr6 22219628 22219775 -127297262 + (TG)n Simple_repeat Simple_repeat 2 148 0 3 754 468 313 44 17 chr6 22220298 22220594 -127296443 + L1MEe LINE L1 632 935 -1572 3 754 668 287 16 39 chr6 22220623 22220818 -127296219 + B3A SINE B2 1 182 -34 3 754 668 294 281 3 chr6 22221363 22221708 -127295329 + MLT1D LTR MaLR 37 477 -28 3 754 637 157 71 10 chr6 22221709 22221839 -127295198 + B1_Mur2 SINE Alu 13 149 0 3 754 1742 103 0 20 chr6 22221930 22222177 -127294860 - L1_Mus2 LINE L1 0 6566 6325 3 754 334 24 0 0 chr6 22222177 22222219 -127294818 + L1_Mus2 LINE L1 6279 6320 -246 3 754 1122 210 23 58 chr6 22222269 22222527 -127294510 - LSU-rRNA_Hsa rRNA rRNA -3282 1753 1505 3 754 1830 269 19 48 chr6 22222529 22223243 -127293794 + Lx6 LINE L1 6452 7434 -26 3 754 291 301 9 0 chr6 22223693 22223802 -127293235 + L1MEe LINE L1 1465 1603 -904 3 754 282 87 0 0 chr6 22223870 22223916 -127293121 + (CAA)n Simple_repeat Simple_repeat 2 47 0 3 754 1690 295 118 18 chr6 22224094 22224830 -127292207 + Lx8 LINE L1 6664 7473 0 3 754 237 292 65 19 chr6 22225004 22225112 -127291925 + L1MA7 LINE L1 6028 6140 -151 3 754 1013 179 45 28 chr6 22225125 22225372 -127291665 - Lx7 LINE L1 -1 7695 7445 3 754 1164 116 53 32 chr6 22225390 22225577 -127291460 + B2_Mm1a SINE B2 1 191 -2 3 754 1360 19 0 0 chr6 22225616 22225776 -127291261 + B2_Mm1t SINE B2 1 160 -33 3 754 429 20 0 0 chr6 22225776 22225826 -127291211 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 3 754 4922 177 55 17 chr6 22225907 22227346 -127289691 - Lx7 LINE L1 -1252 6444 4928 3 754 308 228 0 0 chr6 22227349 22227406 -127289631 + L1_Mur2 LINE L1 4754 4810 -1067 3 754 282 29 0 0 chr6 22227406 22227441 -127289596 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 754 186 43 0 0 chr6 22227531 22227554 -127289483 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3 754 30 45 0 0 chr6 22227647 22227691 -127289346 + AT_rich Low_complexity Low_complexity 1 44 0 3 754 274 299 40 99 chr6 22227755 22227796 -127289241 + MT2B LTR ERVL 122 153 -448 3 754 598 295 36 7 chr6 22227796 22227936 -127289101 + B1_Mur1 SINE Alu 4 147 -2 3 754 293 335 87 59 chr6 22228080 22228299 -127288738 + B4A SINE B4 3 227 -65 3 754 490 196 56 145 chr6 22229118 22229297 -127287740 - RSINE1 SINE B4 0 165 3 3 754 28 0 0 0 chr6 22229299 22229327 -127287710 + AT_rich Low_complexity Low_complexity 1 28 0 3 754 403 46 46 0 chr6 22229570 22229635 -127287402 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 3 754 939 162 7 20 chr6 22229638 22229789 -127287248 - B1_Mur4 SINE Alu 0 150 2 3 754 182 256 23 0 chr6 22231241 22231284 -127285753 - MIRm SINE MIR -31 245 202 3 754 821 202 219 22 chr6 22232424 22232652 -127284385 + B4A SINE B4 2 274 -18 3 754 257 151 0 36 chr6 22232689 22232744 -127284293 - MER4B-int LTR ERV1 -5574 1184 1132 3 754 756 169 13 47 chr6 22233739 22233875 -127283162 + B1_Mur3 SINE Alu 5 138 -11 3 754 396 0 0 0 chr6 22233875 22233919 -127283118 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 754 756 169 13 47 chr6 22233919 22233931 -127283106 + B1_Mur3 SINE Alu 139 148 -1 3 754 240 361 0 0 chr6 22233996 22234057 -127282980 + ID4 SINE ID 10 70 -13 3 754 1245 83 0 0 chr6 22235232 22235412 -127281625 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3 754 288 0 0 0 chr6 22235414 22235446 -127281591 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 754 513 252 96 0 chr6 22235447 22235562 -127281475 + RSINE1 SINE B4 2 127 -38 3 754 680 116 18 0 chr6 22235603 22235715 -127281322 + (GAAA)n Simple_repeat Simple_repeat 1 114 0 3 754 546 16 0 0 chr6 22235718 22235781 -127281256 + (GAGAA)n Simple_repeat Simple_repeat 1 63 0 3 754 1451 111 0 0 chr6 22235781 22235971 -127281066 + B2_Mm2 SINE B2 2 191 -4 3 754 185 250 0 0 chr6 22236385 22236433 -127280604 + L2c LINE L2 3248 3295 -92 3 754 180 111 0 0 chr6 22240724 22240751 -127276286 + (A)n Simple_repeat Simple_repeat 1 27 0 3 754 249 57 0 0 chr6 22242565 22242600 -127274437 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 754 519 17 0 0 chr6 22244646 22244706 -127272331 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 754 480 291 24 0 chr6 22246540 22246667 -127270370 - B1F SINE Alu 0 149 20 3 754 296 306 87 24 chr6 22247085 22247212 -127269825 - MER5A1 DNA MER1_type -30 136 2 3 754 521 191 9 0 chr6 22248523 22248638 -127268399 + GA-rich Low_complexity Low_complexity 2 117 0 3 754 645 38 0 0 chr6 22248655 22248735 -127268302 + (GAGAA)n Simple_repeat Simple_repeat 4 83 0 3 754 292 160 0 0 chr6 22249574 22249623 -127267414 - B1_Mur4 SINE Alu -9 141 63 3 754 233 119 24 0 chr6 22249853 22249895 -127267142 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 3 754 391 211 14 0 chr6 22249925 22249996 -127267041 - BC1_Mm scRNA scRNA -79 73 2 3 754 685 227 0 8 chr6 22251607 22251740 -127265297 + B1_Mur1 SINE Alu 1 132 -17 3 754 24 0 0 0 chr6 22251744 22251768 -127265269 + AT_rich Low_complexity Low_complexity 1 24 0 3 754 2483 7 86 0 chr6 22251961 22252230 -127264807 + RLTR10B LTR ERVK 1 292 0 3 754 294 240 196 55 chr6 22252923 22253086 -127263951 - MIR SINE MIR -76 186 1 3 754 1617 53 0 5 chr6 22255325 22255513 -127261524 + B2_Mm1t SINE B2 1 187 -6 3 754 2184 39 67 0 chr6 22255513 22255767 -127261270 - L1_Mus1 LINE L1 -2 6565 6295 3 754 216 0 0 0 chr6 22256871 22256895 -127260142 + (A)n Simple_repeat Simple_repeat 1 24 0 3 754 204 149 0 0 chr6 22257049 22257096 -127259941 + (A)n Simple_repeat Simple_repeat 1 47 0 3 754 230 127 54 18 chr6 22258727 22258783 -127258254 + A-rich Low_complexity Low_complexity 2 59 0 3 754 1194 55 0 65 chr6 22258819 22258974 -127258063 + B1_Mus1 SINE Alu 4 148 0 3 754 1274 83 60 22 chr6 22260020 22260204 -127256833 + B2_Mm2 SINE B2 1 191 -4 3 754 459 48 0 0 chr6 22260818 22260880 -127256157 + (CATA)n Simple_repeat Simple_repeat 2 63 0 3 754 716 261 6 69 chr6 22260887 22261109 -127255928 + B3A SINE B2 1 202 -14 3 754 245 265 75 47 chr6 22261050 22261157 -127255880 - RMER12 LTR ERVK -474 848 739 3 754 466 315 121 6 chr6 22261729 22262024 -127255013 + MER68 LTR ERVL 1 384 -179 3 754 300 277 33 67 chr6 22262030 22262150 -127254887 + B4A SINE B4 6 121 -171 4 754 406 356 60 30 chr6 22262196 22262396 -127254641 + B4A SINE B4 69 274 -18 4 754 298 328 94 31 chr6 22262799 22262991 -127254046 + B4A SINE B4 83 286 -6 4 754 363 23 0 0 chr6 22263002 22263046 -127253991 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 754 679 279 6 12 chr6 22263064 22263227 -127253810 + RSINE1 SINE B4 2 163 -2 4 754 1321 196 0 17 chr6 22263452 22263686 -127253351 + RLTR14 LTR ERV1 1 230 -152 4 754 498 17 0 0 chr6 22263692 22263751 -127253286 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 754 1212 101 0 12 chr6 22263756 22263927 -127253110 + B2_Mm2 SINE B2 2 170 -25 4 754 330 170 0 0 chr6 22263971 22264024 -127253013 + RLTR14 LTR ERV1 246 298 -84 4 754 263 239 0 43 chr6 22264344 22264358 -127252679 + (CAAA)n Simple_repeat Simple_repeat 2 14 0 4 754 540 271 52 0 chr6 22264358 22264513 -127252524 + RSINE1 SINE B4 3 165 0 4 754 263 239 0 43 chr6 22264513 22264568 -127252469 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 4 754 21 0 0 0 chr6 22265153 22265174 -127251863 + AT_rich Low_complexity Low_complexity 1 21 0 4 754 375 60 0 0 chr6 22265209 22265259 -127251778 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 754 1084 239 58 34 chr6 22265279 22265573 -127251464 + Lx9 LINE L1 7095 7395 -249 4 754 406 255 43 43 chr6 22265600 22265715 -127251322 + B4A SINE B4 2 116 -176 4 754 256 287 31 102 chr6 22265715 22265728 -127251309 + B3A SINE B2 2 120 -78 4 754 983 298 119 55 chr6 22266052 22266684 -127250353 + L3 LINE CR1 3502 4173 -316 4 754 438 290 88 53 chr6 22268199 22268370 -127248667 + B3A SINE B2 2 178 -20 4 754 405 0 0 0 chr6 22268394 22268439 -127248598 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 754 677 239 61 71 chr6 22270358 22270556 -127246481 + B3A SINE B2 2 197 -1 4 754 468 77 0 0 chr6 22270765 22270830 -127246207 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 754 284 48 24 0 chr6 22270888 22270930 -127246107 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 754 391 239 35 44 chr6 22272626 22272740 -127244297 + B3A SINE B2 80 192 -6 4 754 514 306 122 8 chr6 22273357 22273604 -127243433 - MER63C DNA AcHobo -100 830 556 4 754 1031 276 135 31 chr6 22274318 22274927 -127242110 + L1MB8 LINE L1 5389 6060 -118 4 754 228 170 0 0 chr6 22274967 22275020 -127242017 + GA-rich Low_complexity Low_complexity 4 56 0 4 754 1835 138 52 6 chr6 22275074 22275401 -127241636 - ORR1B1 LTR MaLR -1 393 52 4 754 200 338 13 0 chr6 22275998 22276075 -127240962 + C-rich Low_complexity Low_complexity 4 81 0 4 754 229 26 26 26 chr6 22276099 22276138 -127240899 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 754 216 0 0 0 chr6 22276464 22276488 -127240549 + (A)n Simple_repeat Simple_repeat 1 24 0 4 754 197 276 69 0 chr6 22276951 22277009 -127240028 + L2c LINE L2 3247 3308 -79 4 754 181 234 20 41 chr6 22277125 22277174 -127239863 - L3 LINE CR1 -937 3552 3505 4 754 833 238 54 5 chr6 22278805 22279008 -127238029 + B3 SINE B2 1 213 -3 4 754 180 125 0 0 chr6 22279955 22279987 -127237050 + (CTG)n Simple_repeat Simple_repeat 1 32 0 4 754 483 254 87 27 chr6 22280896 22281046 -127235991 + RSINE1 SINE B4 7 165 0 4 754 763 159 87 0 chr6 22281102 22281240 -127235797 + B1_Mur4 SINE Alu 1 150 0 4 754 183 80 0 0 chr6 22281250 22281275 -127235762 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 4 754 812 244 0 18 chr6 22281672 22281839 -127235198 - RSINE1 SINE B4 0 165 2 4 754 386 234 281 23 chr6 22282039 22282210 -127234827 + B3 SINE B2 2 216 0 4 755 278 235 35 12 chr6 22282992 22283078 -127233959 + L1MD2 LINE L1 6272 6359 0 4 755 230 155 136 121 chr6 22283107 22283173 -127233864 - ID4_ SINE ID -11 72 6 4 755 873 143 14 14 chr6 22283373 22283515 -127233522 + B1_Mus2 SINE Alu 1 142 -5 4 755 1188 243 4 23 chr6 22283533 22283794 -127233243 + Lx6 LINE L1 7202 7457 -3 4 755 316 286 0 0 chr6 22284591 22284668 -127232369 + ID4 SINE ID 2 78 -5 4 755 10496 162 33 19 chr6 22285165 22287428 -127229609 + Lx5 LINE L1 3987 6275 -775 4 755 1261 34 0 0 chr6 22287428 22287574 -127229463 - B1_Mm SINE Alu 0 147 2 4 755 6209 201 60 42 chr6 22287574 22288317 -127228720 + Lx5 LINE L1 6276 7035 -15 4 755 1026 191 4 69 chr6 22288353 22288584 -127228453 + B3 SINE B2 1 216 0 4 755 1157 282 113 48 chr6 22288606 22289183 -127227854 + Lx8 LINE L1 6854 7467 -6 4 755 306 169 0 17 chr6 22290497 22290586 -127226451 + L1MC1 LINE L1 6262 6333 0 4 755 306 169 0 17 chr6 22290586 22290597 -127226440 + L1MC1 LINE L1 6310 6320 -13 4 755 367 183 14 14 chr6 22290983 22291055 -127225982 - L1MC1 LINE L1 -17 6316 6245 4 755 799 200 80 20 chr6 22291236 22291435 -127225602 - B3 SINE B2 -5 211 1 4 755 218 22 85 21 chr6 22292611 22292658 -127224379 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 4 755 243 61 0 0 chr6 22293460 22293493 -127223544 + (A)n Simple_repeat Simple_repeat 1 33 0 4 755 183 114 0 0 chr6 22294553 22294588 -127222449 + (CCTG)n Simple_repeat Simple_repeat 3 37 0 4 755 1418 66 39 0 chr6 22295202 22295384 -127221653 + B2_Mm2 SINE B2 2 190 -5 4 755 624 154 0 37 chr6 22295852 22295960 -127221077 + B1_Mm SINE Alu 32 135 -12 4 755 207 0 0 0 chr6 22295963 22295986 -127221051 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 755 510 173 307 24 chr6 22296973 22297139 -127219898 - B3 SINE B2 -3 213 1 4 755 434 262 52 39 chr6 22297754 22297909 -127219128 + MER21B LTR ERV1 274 430 -433 4 755 444 286 157 58 chr6 22297964 22298257 -127218780 + MER21B LTR ERV1 525 846 -17 4 755 216 228 0 0 chr6 22298496 22298553 -127218484 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 4 755 423 210 0 83 chr6 22298779 22298888 -127218149 + B1_Mur4 SINE Alu 51 150 0 4 755 649 167 9 9 chr6 22299062 22299177 -127217860 - B1_Mur1 SINE Alu -2 147 33 4 755 230 242 32 42 chr6 22299101 22299196 -127217841 - RLTR25B LTR ERVK -521 507 414 4 755 225 268 0 79 chr6 22299197 22299286 -127217751 - MER58B DNA MER1_type -144 197 116 4 755 985 164 87 0 chr6 22300090 22300297 -127216740 + ORR1C2 LTR MaLR 160 384 0 4 755 262 244 24 0 chr6 22300297 22300379 -127216658 + ID_B1 SINE B4 139 222 -2 4 755 213 39 0 0 chr6 22300712 22300738 -127216299 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 4 755 258 250 36 0 chr6 22300826 22300910 -127216127 + ID_B1 SINE B4 130 216 -8 4 755 203 157 20 0 chr6 22302562 22302613 -127214424 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 755 378 273 120 21 chr6 22302636 22302778 -127214259 - B4A SINE B4 0 292 137 4 755 182 37 0 36 chr6 22302969 22302997 -127214040 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 755 22 0 0 0 chr6 22306109 22306131 -127210906 + GC_rich Low_complexity Low_complexity 1 22 0 4 755 414 0 0 0 chr6 22306398 22306444 -127210593 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 755 1289 113 5 0 chr6 22306973 22307159 -127209878 + B2_Mm1a SINE B2 1 187 -6 4 755 31 0 0 0 chr6 22307172 22307203 -127209834 + AT_rich Low_complexity Low_complexity 1 31 0 4 755 1348 163 139 10 chr6 22307302 22307342 -127209695 - ORR1C2 LTR MaLR -19 365 317 4 755 197 33 33 0 chr6 22307342 22307372 -127209665 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 755 1348 163 139 10 chr6 22307372 22307634 -127209403 - ORR1C2 LTR MaLR -68 316 24 4 755 867 186 0 0 chr6 22308603 22308748 -127208289 + B1_Mur2 SINE Alu 4 148 -1 4 755 5365 101 118 15 chr6 22310529 22310917 -127206120 + RMER17B LTR ERVK 1 399 -559 4 755 843 10 0 0 chr6 22310917 22311013 -127206024 + (TC)n Simple_repeat Simple_repeat 2 97 0 4 755 5365 101 118 15 chr6 22311013 22311490 -127205547 + RMER17B LTR ERVK 400 954 -4 4 755 706 239 116 11 chr6 22311620 22311810 -127205227 + B3 SINE B2 1 210 -6 4 755 208 125 50 0 chr6 22312801 22312841 -127204196 + A-rich Low_complexity Low_complexity 4 45 0 4 755 253 302 45 28 chr6 22313341 22313468 -127203569 + MIR SINE MIR 38 171 -97 4 755 1351 84 6 16 chr6 22314366 22314548 -127202489 + B2_Mm1t SINE B2 1 180 -13 4 755 266 116 336 112 chr6 22314587 22314694 -127202343 + B2_Mm2 SINE B2 64 194 -1 4 755 358 298 82 0 chr6 22314697 22314855 -127202182 + L1MD2 LINE L1 6007 6177 -182 4 755 278 296 23 0 chr6 22315093 22315181 -127201856 + L1MD1 LINE L1 6147 6236 -6 4 755 244 346 28 19 chr6 22315319 22315425 -127201612 + L1MD2 LINE L1 6006 6112 -247 4 755 296 264 44 0 chr6 22315579 22315670 -127201367 - MLT1B LTR MaLR -15 375 281 4 755 180 0 0 0 chr6 22315790 22315810 -127201227 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 755 408 329 74 54 chr6 22316451 22316801 -127200236 - ORR1E LTR MaLR 0 359 3 4 755 331 217 0 0 chr6 22317577 22317637 -127199400 - RLTR23 LTR ERV1 -9 421 362 4 755 212 77 26 0 chr6 22317655 22317694 -127199343 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 4 755 852 54 0 0 chr6 22317696 22317808 -127199229 - B1_Mus1 SINE Alu 0 148 37 4 755 2299 86 29 43 chr6 22317808 22318183 -127198854 - RLTR23 LTR ERV1 -60 370 1 4 755 1106 254 91 20 chr6 22318320 22318662 -127198375 - ORR1D1 LTR MaLR -5 369 4 4 755 1384 241 164 30 chr6 22318815 22319258 -127197779 - L1MC LINE L1 -1382 4764 4248 4 755 195 42 0 0 chr6 22319258 22319282 -127197755 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 4 755 1384 238 168 31 chr6 22319282 22319431 -127197606 - L1MC LINE L1 -1899 4247 4094 4 755 1179 43 0 0 chr6 22319431 22319569 -127197468 + B1_Mus1 SINE Alu 1 138 -10 4 755 1384 238 168 31 chr6 22319569 22319638 -127197399 - L1MC LINE L1 -2053 4093 4014 4 755 822 249 39 0 chr6 22319748 22319981 -127197056 - L1MC LINE L1 -2720 3426 3185 4 755 228 135 0 0 chr6 22320569 22320606 -127196431 + (G)n Simple_repeat Simple_repeat 1 37 0 4 755 779 209 0 20 chr6 22320694 22320845 -127196192 - B1_Mur3 SINE Alu 0 149 2 4 755 232 143 56 14 chr6 22320930 22321001 -127196036 + (TATAA)n Simple_repeat Simple_repeat 4 77 0 4 755 285 284 0 0 chr6 22321005 22321072 -127195965 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 5 755 407 155 29 10 chr6 22321076 22321180 -127195857 + (TA)n Simple_repeat Simple_repeat 2 107 0 5 755 2193 59 24 42 chr6 22321201 22321538 -127195499 - MTB LTR MaLR -3 397 67 5 755 325 253 12 37 chr6 22321663 22321745 -127195292 + B4 SINE B4 77 156 -136 5 755 446 139 0 0 chr6 22321679 22321751 -127195286 + B1_Mus2 SINE Alu 5 76 -71 5 755 585 288 12 10 chr6 22322317 22322481 -127194556 + ID_B1 SINE B4 80 241 -51 5 755 261 314 60 108 chr6 22323465 22323697 -127193340 + MLT1A LTR MaLR 1 221 -153 5 755 894 209 63 29 chr6 22323700 22323907 -127193130 + B3 SINE B2 2 215 -1 5 755 892 221 82 0 chr6 22323935 22324130 -127192907 - B3 SINE B2 -5 211 1 5 755 298 298 88 8 chr6 22324198 22324323 -127192714 + MLT1A LTR MaLR 220 354 -20 5 755 387 313 19 8 chr6 22324689 22324845 -127192192 + B3A SINE B2 2 159 -36 5 755 206 282 136 0 chr6 22325220 22325330 -127191707 + MIRb SINE MIR 75 199 -69 5 755 492 209 0 54 chr6 22325914 22326025 -127191012 + B1_Mur3 SINE Alu 3 107 -42 5 755 1938 114 50 36 chr6 22326028 22326365 -127190672 + RMER19A LTR ERVK 4 345 -392 5 755 909 65 0 0 chr6 22326365 22326489 -127190548 + B1_Mus2 SINE Alu 2 125 -22 5 755 419 35 18 0 chr6 22326490 22326547 -127190490 + (GAAA)n Simple_repeat Simple_repeat 2 59 0 5 755 1552 147 66 3 chr6 22326551 22326838 -127190199 + RMER19A LTR ERVK 328 632 -105 5 755 860 96 0 0 chr6 22327190 22327315 -127189722 + RMER19A LTR ERVK 613 737 0 5 755 246 200 13 51 chr6 22327345 22327424 -127189613 + GA-rich Low_complexity Low_complexity 2 77 0 5 755 704 170 73 7 chr6 22327428 22327564 -127189473 + B1_Mur4 SINE Alu 6 150 0 5 755 346 151 0 27 chr6 22328124 22328199 -127188838 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 755 832 291 20 5 chr6 22328199 22328399 -127188638 - B3 SINE B2 -13 203 1 5 755 210 37 0 0 chr6 22328535 22328562 -127188475 + (TCTCTG)n Simple_repeat Simple_repeat 3 29 0 5 755 292 71 36 0 chr6 22329168 22329224 -127187813 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 5 755 1101 204 73 50 chr6 22329370 22329670 -127187367 + MTD LTR MaLR 68 374 -45 5 755 410 111 0 58 chr6 22329681 22329710 -127187327 + T-rich Low_complexity Low_complexity 53 81 0 5 755 943 39 148 0 chr6 22329710 22329838 -127187199 - B1_Mm SINE Alu 0 147 1 5 755 410 111 0 58 chr6 22329838 22329894 -127187143 + T-rich Low_complexity Low_complexity 2 52 0 5 755 606 211 194 0 chr6 22330817 22330992 -127186045 - ORR1D1 LTR MaLR 0 374 166 5 755 837 142 0 0 chr6 22330993 22331134 -127185903 + (GA)n Simple_repeat Simple_repeat 1 141 0 5 755 288 0 0 0 chr6 22331526 22331558 -127185479 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 755 992 122 0 6 chr6 22331703 22331868 -127185169 + (TTC)n Simple_repeat Simple_repeat 3 166 0 5 755 194 33 67 0 chr6 22331873 22331903 -127185134 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 5 755 294 206 0 0 chr6 22331947 22332010 -127185027 + CT-rich Low_complexity Low_complexity 3 65 0 5 755 962 97 0 7 chr6 22332010 22332155 -127184882 + (TTC)n Simple_repeat Simple_repeat 3 146 0 5 755 194 33 67 0 chr6 22332160 22332190 -127184847 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 5 755 286 212 0 70 chr6 22332867 22332938 -127184099 - PB1D9 SINE Alu -30 90 25 5 755 1215 48 0 0 chr6 22333354 22333500 -127183537 - B1_Mm SINE Alu 0 147 2 5 755 4100 29 25 0 chr6 22334161 22334642 -127182395 - L1Md_F2 LINE L1 0 6582 6090 5 755 2084 126 27 153 chr6 22335212 22335701 -127181336 - RLTR23 LTR ERV1 -3 427 1 5 755 255 57 0 0 chr6 22335911 22335918 -127181119 + (TCCC)n Simple_repeat Simple_repeat 2 8 0 5 755 1223 94 0 6 chr6 22335918 22336099 -127180938 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 755 255 57 0 0 chr6 22336099 22336126 -127180911 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 5 755 585 42 0 0 chr6 22336126 22336198 -127180839 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 5 755 1154 80 0 6 chr6 22336203 22336367 -127180670 - B2_Mm2 SINE B2 -18 177 15 5 755 1705 177 78 25 chr6 22336427 22336786 -127180251 + ORR1C1 LTR MaLR 1 378 0 5 755 1243 48 0 0 chr6 22336818 22336965 -127180072 + B1_Mm SINE Alu 1 147 0 5 755 189 74 0 0 chr6 22336981 22337008 -127180029 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 755 284 306 12 0 chr6 22337252 22337337 -127179700 + GA-rich Low_complexity Low_complexity 2 87 0 5 755 1404 72 39 0 chr6 22338208 22338389 -127178648 - B2_Mm2 SINE B2 -6 189 2 5 755 180 0 0 0 chr6 22338561 22338581 -127178456 + (GGGGA)n Simple_repeat Simple_repeat 5 24 0 5 755 1689 159 52 30 chr6 22338730 22339131 -127177906 + RMER17C LTR ERVK 1 410 0 5 755 36 0 0 0 chr6 22339430 22339466 -127177571 + AT_rich Low_complexity Low_complexity 1 36 0 5 755 469 155 95 19 chr6 22339764 22339869 -127177168 + B1_Mur4 SINE Alu 17 129 -21 5 755 310 247 66 22 chr6 22340033 22340124 -127176913 + PB1D7 SINE Alu 18 112 -8 5 755 225 65 0 0 chr6 22340305 22340336 -127176701 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 755 429 282 50 33 chr6 22340364 22340544 -127176493 - B3A SINE B2 -15 183 1 5 755 308 277 0 46 chr6 22340933 22341020 -127176017 - MTC LTR MaLR -338 83 1 5 755 180 0 0 0 chr6 22341148 22341168 -127175869 + (T)n Simple_repeat Simple_repeat 1 20 0 5 755 201 184 0 20 chr6 22341410 22341460 -127175577 + GA-rich Low_complexity Low_complexity 2 50 0 5 755 6345 78 17 10 chr6 22342547 22344143 -127172894 + L1VL2 LINE L1 220 1826 -1789 5 755 239 303 0 0 chr6 22344287 22344363 -127172674 - PB1D10 SINE Alu -2 115 40 5 755 21 0 0 0 chr6 22344830 22344851 -127172186 + AT_rich Low_complexity Low_complexity 1 21 0 5 755 35 54 0 0 chr6 22344858 22344914 -127172123 + AT_rich Low_complexity Low_complexity 1 56 0 5 755 253 309 12 0 chr6 22345100 22345181 -127171856 + MIR3 SINE MIR 116 197 -11 5 755 772 245 0 90 chr6 22346137 22346370 -127170667 + ID_B1 SINE B4 2 213 -11 5 755 208 121 0 0 chr6 22346370 22346403 -127170634 + (TCTCTG)n Simple_repeat Simple_repeat 5 37 0 5 755 248 91 23 0 chr6 22346405 22346449 -127170588 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 755 204 315 101 0 chr6 22346473 22346562 -127170475 - MER5B DNA MER1_type -76 102 5 5 755 565 128 20 0 chr6 22347475 22347577 -127169460 + (TTCC)n Simple_repeat Simple_repeat 2 105 0 5 755 1067 90 7 0 chr6 22347578 22347722 -127169315 - B1_Mus1 SINE Alu -3 145 1 5 755 1694 16 11 0 chr6 22347977 22348168 -127168869 - B2_Mm1a SINE B2 0 193 1 5 755 26 0 0 0 chr6 22348458 22348484 -127168553 + AT_rich Low_complexity Low_complexity 1 26 0 5 755 359 235 39 12 chr6 22348786 22348898 -127168139 + RLTR11B LTR ERVK 5 116 -411 5 755 1271 192 102 33 chr6 22348905 22349040 -127167997 - RMER17C LTR ERVK -9 401 263 5 755 180 0 0 0 chr6 22349040 22349060 -127167977 + (AATAG)n Simple_repeat Simple_repeat 5 24 0 5 755 1271 192 102 33 chr6 22349060 22349109 -127167928 - RMER17C LTR ERVK -148 262 215 5 755 554 0 15 0 chr6 22349109 22349175 -127167862 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 755 1271 181 28 52 chr6 22349175 22349409 -127167628 - RMER17C LTR ERVK -554 404 19 5 755 558 279 26 75 chr6 22349400 22349827 -127167210 + RLTR11B LTR ERVK 101 477 -51 5 755 32 67 0 0 chr6 22349964 22350024 -127167013 + AT_rich Low_complexity Low_complexity 1 60 0 5 755 24 0 0 0 chr6 22350045 22350069 -127166968 + AT_rich Low_complexity Low_complexity 1 24 0 5 755 1200 228 166 44 chr6 22350069 22350569 -127166468 - RMER4B LTR ERVK -11 574 14 5 755 636 167 67 8 chr6 22350851 22350987 -127166050 - B1_Mur3 SINE Alu 0 149 2 5 755 1515 67 0 10 chr6 22351322 22351518 -127165519 + B2_Mm2 SINE B2 2 195 0 5 755 428 194 102 0 chr6 22352379 22352477 -127164560 - PB1D9 SINE Alu -8 112 5 5 755 793 221 170 116 chr6 22352790 22353143 -127163894 + ORR1D1 LTR MaLR 1 372 -2 5 755 234 239 75 0 chr6 22353286 22353353 -127163684 + HAL1 LINE L1 12 83 -2424 5 755 202 319 207 23 chr6 22353647 22353952 -127163085 - L3b LINE CR1 -115 367 7 5 755 2173 104 3 0 chr6 22354837 22355155 -127161882 - ORR1A2 LTR MaLR -8 319 1 5 755 234 253 143 26 chr6 22355155 22355232 -127161805 - PB1 SINE Alu -29 98 13 5 755 30 27 0 0 chr6 22355609 22355646 -127161391 + AT_rich Low_complexity Low_complexity 1 37 0 5 755 204 213 0 0 chr6 22355653 22355714 -127161323 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 755 604 227 11 0 chr6 22355767 22355943 -127161094 + (TA)n Simple_repeat Simple_repeat 2 179 0 5 755 1198 55 0 0 chr6 22356039 22356184 -127160853 + B1_Mus2 SINE Alu 2 146 -1 5 755 181 297 179 48 chr6 22356477 22356622 -127160415 + L2 LINE L2 1444 1607 -1812 5 755 1268 219 89 51 chr6 22356638 22356758 -127160279 - MTD LTR MaLR -2 417 290 5 755 2529 120 11 8 chr6 22356758 22357135 -127159902 - RLTR14 LTR ERV1 0 382 5 5 755 1268 219 89 51 chr6 22357135 22357409 -127159628 - MTD LTR MaLR -130 289 8 5 755 315 213 0 0 chr6 22357688 22357763 -127159274 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 755 226 326 58 0 chr6 22358111 22358197 -127158840 + MLT1E1A LTR MaLR 578 668 -12 5 755 783 165 28 14 chr6 22358251 22358392 -127158645 - B1_Mur3 SINE Alu -3 146 4 5 755 608 206 7 0 chr6 22359539 22359685 -127157352 + GA-rich Low_complexity Low_complexity 3 149 0 5 755 227 261 0 127 chr6 22360095 22360108 -127156929 + MT2B LTR ERVL 155 222 -378 5 755 404 200 0 0 chr6 22360108 22360173 -127156864 + PB1D9 SINE Alu 1 65 -55 5 755 33 43 0 0 chr6 22360314 22360361 -127156676 + AT_rich Low_complexity Low_complexity 1 47 0 5 755 22 35 0 0 chr6 22360853 22360882 -127156155 + AT_rich Low_complexity Low_complexity 1 29 0 5 755 667 234 0 27 chr6 22360993 22361142 -127155895 - B1_Mur1 SINE Alu 0 149 5 5 755 394 259 83 0 chr6 22362667 22362775 -127154262 + ID_B1 SINE B4 69 185 -39 6 755 307 198 83 73 chr6 22362686 22362795 -127154242 + PB1D10 SINE Alu 7 116 -1 6 755 362 288 104 52 chr6 22364057 22364288 -127152749 - MLT1C LTR MaLR -30 437 195 6 755 1489 173 11 144 chr6 22364771 22365244 -127151793 + RMER17C LTR ERVK 1 410 0 6 755 2542 80 3 3 chr6 22365403 22365730 -127151307 - ORR1A2 LTR MaLR 0 327 1 6 755 2027 157 5 66 chr6 22366325 22366749 -127150288 - RMER10B LTR ERVL 0 398 1 6 755 2394 107 39 67 chr6 22367237 22367747 -127149290 + RLTR28 LTR ERVL 3 498 -26 6 755 754 167 71 0 chr6 22367988 22368114 -127148923 + B1_Mus2 SINE Alu 1 135 -12 6 755 357 24 0 0 chr6 22368116 22368158 -127148879 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 755 651 124 16 0 chr6 22368244 22368365 -127148672 - BC1_Mm scRNA scRNA -29 123 1 6 755 211 54 54 0 chr6 22368570 22368607 -127148430 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 755 21 0 0 0 chr6 22368918 22368939 -127148098 + AT_rich Low_complexity Low_complexity 1 21 0 6 755 858 38 0 0 chr6 22369116 22369222 -127147815 + (TG)n Simple_repeat Simple_repeat 2 107 0 6 755 248 270 146 38 chr6 22370054 22370212 -127146825 + Tigger10 DNA Tigger 792 966 -877 6 755 201 132 0 0 chr6 22370225 22370263 -127146774 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 755 2844 189 62 99 chr6 22370472 22371159 -127145878 + RLTR40 LTR ERVK 1 642 -175 6 755 228 35 0 0 chr6 22371159 22371188 -127145849 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 6 755 2844 189 62 99 chr6 22371188 22371334 -127145703 + RLTR40 LTR ERVK 643 802 -15 6 755 220 211 14 14 chr6 22371642 22371714 -127145323 + G-rich Low_complexity Low_complexity 5 76 0 6 755 2248 162 8 11 chr6 22372181 22372549 -127144488 + ORR1B2 LTR MaLR 1 367 0 6 755 2634 168 121 57 chr6 22372549 22373238 -127143799 + ORR1B2-int LTR MaLR 1 733 -776 6 755 522 191 8 57 chr6 22373157 22373279 -127143758 + B1_Mus1 SINE Alu 7 122 -26 6 755 240 86 0 0 chr6 22373331 22373366 -127143671 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 755 242 29 0 28 chr6 22373470 22373506 -127143531 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 755 224 312 43 11 chr6 22373533 22373627 -127143410 + CT-rich Low_complexity Low_complexity 3 99 0 6 755 354 316 17 8 chr6 22374576 22374694 -127142343 + B4A SINE B4 5 123 -169 6 755 2394 134 20 98 chr6 22374699 22375187 -127141850 - RLTR11B LTR ERVK -2 451 2 6 755 897 187 121 211 chr6 22375346 22375767 -127141270 - ORR1C2 LTR MaLR 0 384 2 6 755 2530 163 43 89 chr6 22376033 22376585 -127140452 + RLTR24 LTR ERV1 1 527 -2 6 755 197 359 16 0 chr6 22377056 22377120 -127139917 + L2c LINE L2 3299 3363 -24 6 755 777 181 6 63 chr6 22377189 22377348 -127139689 + B1_Mur4 SINE Alu 1 150 0 6 755 192 77 0 0 chr6 22377669 22377695 -127139342 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 755 552 259 108 30 chr6 22377938 22378105 -127138932 - B3A SINE B2 -16 182 3 6 755 555 310 20 10 chr6 22378133 22378335 -127138702 - B3 SINE B2 -12 204 1 6 755 213 205 0 0 chr6 22378335 22378374 -127138663 + CT-rich Low_complexity Low_complexity 3 41 0 6 755 195 114 0 0 chr6 22378380 22378415 -127138622 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 755 593 241 105 0 chr6 22378422 22378555 -127138482 - B1_Mur1 SINE Alu -1 148 2 6 755 458 297 77 75 chr6 22378721 22379110 -127137927 - MLT1B LTR MaLR 0 390 1 6 755 693 253 15 84 chr6 22379739 22379942 -127137095 - B3A SINE B2 -9 189 1 6 755 501 285 42 21 chr6 22380122 22380312 -127136725 + ORR1E LTR MaLR 4 197 -162 6 755 363 282 32 0 chr6 22380328 22380452 -127136585 - L1M2 LINE L1 -2386 3757 3630 6 755 3430 54 31 9 chr6 22380457 22380903 -127136134 - L1Md_F3 LINE L1 0 6584 6129 6 755 544 180 82 0 chr6 22381093 22381215 -127135822 + B1_Mur1 SINE Alu 18 149 0 6 755 1171 107 70 48 chr6 22381256 22381443 -127135594 + B2_Mm1t SINE B2 3 193 0 6 755 981 128 42 58 chr6 22381620 22381810 -127135227 + B2_Mm2 SINE B2 1 187 -8 6 755 2038 182 65 38 chr6 22381823 22382297 -127134740 + Lx7 LINE L1 6819 7305 -391 6 755 666 217 111 60 chr6 22382300 22382516 -127134521 + Lx7 LINE L1 7470 7696 0 6 755 394 202 44 0 chr6 22382546 22382660 -127134377 + Lx9 LINE L1 7518 7636 -8 6 755 380 275 46 0 chr6 22382775 22382865 -127134172 + B3A SINE B2 1 95 -103 6 755 626 53 10 31 chr6 22382865 22382962 -127134075 + RLTR9E LTR ERVK 1 95 -314 6 755 631 202 16 0 chr6 22382956 22383080 -127133957 + B3 SINE B2 85 210 -6 6 755 226 211 0 0 chr6 22383508 22383546 -127133491 + polypyrimidine Low_complexity Low_complexity 5 42 0 6 755 634 191 6 34 chr6 22383546 22383725 -127133312 + C-rich Low_complexity Low_complexity 1 174 0 6 755 241 220 0 0 chr6 22383726 22383776 -127133261 + CT-rich Low_complexity Low_complexity 3 52 0 6 755 618 278 43 78 chr6 22383787 22384050 -127132987 - MTE2a LTR MaLR -39 380 75 6 755 567 0 0 0 chr6 22384050 22384113 -127132924 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 755 618 304 51 109 chr6 22384113 22384136 -127132901 - MTE2a LTR MaLR -305 74 62 6 755 1475 69 16 0 chr6 22384136 22384325 -127132712 - B2_Mm1a SINE B2 0 193 2 6 755 618 304 51 109 chr6 22384325 22384398 -127132639 - MTE2a LTR MaLR -318 61 1 6 755 1769 147 57 114 chr6 22384745 22385167 -127131870 + RMER10B LTR ERVL 1 398 0 6 755 800 123 72 0 chr6 22385272 22385410 -127131627 + B1_Mur4 SINE Alu 2 149 -1 6 755 180 158 0 0 chr6 22385454 22385492 -127131545 + A-rich Low_complexity Low_complexity 1 38 0 6 755 1143 88 0 0 chr6 22385690 22385837 -127131200 - B1_Mus2 SINE Alu 0 147 1 6 755 243 200 123 41 chr6 22385943 22386016 -127131021 + ID4_ SINE ID 2 80 -3 6 755 2434 19 0 13 chr6 22386128 22386444 -127130593 - LTRIS2 LTR ERV1 0 564 253 6 755 948 122 0 0 chr6 22386442 22386581 -127130456 - LTRIS2 LTR ERV1 -425 139 1 6 755 591 278 82 66 chr6 22386771 22387014 -127130023 - MER21B LTR ERV1 -30 833 587 6 755 1048 223 19 0 chr6 22387055 22387266 -127129771 + B3 SINE B2 1 215 -1 6 755 213 269 0 0 chr6 22387372 22387424 -127129613 - PB1D10 SINE Alu -3 114 63 6 755 411 356 46 58 chr6 22387503 22387762 -127129275 - Arthur1B DNA Tip100 -621 604 349 6 755 404 304 107 5 chr6 22389091 22389306 -127127731 + L1MA6 LINE L1 6060 6296 -4 6 755 224 59 0 29 chr6 22390225 22390260 -127126777 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 6 755 417 323 14 113 chr6 22390284 22390497 -127126540 - MLT1B LTR MaLR 0 467 231 6 755 895 117 0 21 chr6 22390570 22390710 -127126327 + B1_Mur1 SINE Alu 12 148 -1 6 755 372 256 16 49 chr6 22390712 22390835 -127126202 - MLT1B LTR MaLR -264 126 8 6 755 437 176 0 0 chr6 22390837 22390922 -127126115 + MT2A LTR ERVL 1 85 -448 6 755 1107 50 42 14 chr6 22391035 22391177 -127125860 - B1_Mm SINE Alu 0 147 2 6 755 244 217 83 0 chr6 22391505 22391565 -127125472 - L1MC5 LINE L1 -1134 6827 6763 6 755 1437 65 37 11 chr6 22391615 22391803 -127125234 + B2_Mm2 SINE B2 1 193 -2 6 755 186 50 75 0 chr6 22392504 22392544 -127124493 + (TTTTTA)n Simple_repeat Simple_repeat 4 46 0 6 755 1074 95 0 0 chr6 22392544 22392691 -127124346 - B1_Mm SINE Alu 0 147 1 6 755 292 333 33 0 chr6 22392740 22392830 -127124207 + B4 SINE B4 116 208 -84 6 755 1654 139 150 23 chr6 22394842 22395189 -127121848 - RLTR9B2 LTR ERVK 0 420 30 6 755 1050 112 0 0 chr6 22395603 22395763 -127121274 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 6 755 911 126 56 12 chr6 22395763 22395924 -127121113 - B2_Mm2 SINE B2 -26 169 2 6 755 383 313 194 0 chr6 22396184 22396385 -127120652 + Tigger5 DNA MER2_type 1 240 -2166 6 755 268 311 126 0 chr6 22396383 22396486 -127120551 + Tigger5 DNA MER2_type 2291 2406 0 6 755 408 250 62 0 chr6 22396850 22396963 -127120074 + B3A SINE B2 81 199 -17 6 755 636 67 0 0 chr6 22397722 22397812 -127119225 + (TC)n Simple_repeat Simple_repeat 2 91 0 6 755 727 122 23 23 chr6 22398136 22398312 -127118725 + (TG)n Simple_repeat Simple_repeat 1 176 0 6 755 601 149 46 19 chr6 22398326 22398588 -127118449 + (TG)n Simple_repeat Simple_repeat 1 269 0 6 755 1083 114 28 28 chr6 22399447 22399627 -127117410 - B2_Mm2 SINE B2 -14 181 2 6 755 552 281 52 0 chr6 22399772 22399907 -127117130 + ID_B1 SINE B4 79 220 -4 6 755 239 325 0 0 chr6 22400100 22400183 -127116854 + BC1_Mm scRNA scRNA 17 99 -53 6 755 2375 175 7 5 chr6 22401205 22401625 -127115412 - MTC LTR MaLR 0 421 1 6 755 379 271 282 4 chr6 22401780 22402028 -127115009 + Tigger6a DNA MER2_type 6 322 -761 6 755 2226 123 73 16 chr6 22402136 22402507 -127114530 - ORR1B1 LTR MaLR 0 394 3 6 755 390 21 0 0 chr6 22402573 22402620 -127114417 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 755 470 280 146 16 chr6 22402777 22402962 -127114075 + B3 SINE B2 1 209 -7 6 755 1135 88 0 7 chr6 22402977 22403126 -127113911 + B1_Mus1 SINE Alu 1 148 0 6 755 183 114 0 0 chr6 22403129 22403164 -127113873 + (A)n Simple_repeat Simple_repeat 1 35 0 6 755 2708 13 0 0 chr6 22403541 22403841 -127113196 + L1Md_F2 LINE L1 5287 5586 -297 6 755 8268 44 4 4 chr6 22403841 22404837 -127112200 + L1Md_F2 LINE L1 5587 6582 0 6 755 4940 82 10 0 chr6 22404837 22405548 -127111489 + MTA_Mm-int LTR MaLR 381 1098 0 6 755 3072 32 53 3 chr6 22405548 22405925 -127111112 + MTA_Mm LTR MaLR 1 396 0 6 755 2036 62 61 21 chr6 22405925 22406205 -127110832 + L1_Mus1 LINE L1 6277 6567 0 6 755 308 314 138 23 chr6 22406945 22407163 -127109874 + Tigger6a DNA MER2_type 534 776 -307 6 755 651 236 62 138 chr6 22407141 22407275 -127109762 - MTE2a LTR MaLR -91 288 172 6 755 1238 85 0 6 chr6 22407275 22407453 -127109584 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 6 755 651 236 62 138 chr6 22407453 22407623 -127109414 - MTE2a LTR MaLR -208 171 7 6 755 240 35 0 0 chr6 22407746 22407775 -127109262 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 755 592 300 43 6 chr6 22407778 22407939 -127109098 - B3A SINE B2 -30 168 2 6 755 180 0 0 0 chr6 22407999 22408019 -127109018 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 755 797 141 8 0 chr6 22408019 22408147 -127108890 - B1_Mur3 SINE Alu -13 136 8 6 755 295 236 17 109 chr6 22408048 22408167 -127108870 - MT2B LTR ERVL -341 260 153 7 755 910 69 158 7 chr6 22408178 22408324 -127108713 - B2_Mm2 SINE B2 -27 168 1 7 755 513 174 0 0 chr6 22409013 22409111 -127107926 + GA-rich Low_complexity Low_complexity 3 100 0 7 755 238 296 188 23 chr6 22409128 22409256 -127107781 - MIR SINE MIR -27 241 93 7 755 433 302 82 21 chr6 22409417 22409730 -127107307 + LTR48B LTR ERV1 1 344 -443 7 755 299 284 152 59 chr6 22409761 22409997 -127107040 + LTR48B LTR ERV1 530 787 0 7 755 459 0 0 0 chr6 22410221 22410272 -127106765 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 755 1591 164 31 40 chr6 22410406 22410730 -127106307 - Lx7 LINE L1 -17 7679 7359 7 755 5936 181 62 4 chr6 22410792 22410831 -127106206 - Lx5 LINE L1 -3 7047 7009 7 755 1287 0 0 0 chr6 22410831 22410974 -127106063 + (TCTCC)n Simple_repeat Simple_repeat 2 144 0 7 755 5936 181 62 4 chr6 22410974 22412032 -127105005 - Lx5 LINE L1 -42 7008 5886 7 755 4416 133 97 18 chr6 22412032 22412770 -127104267 - L1_Mur2 LINE L1 -82 5795 4986 7 755 1676 32 0 0 chr6 22412770 22412958 -127104079 - B2_Mm1t SINE B2 -4 189 2 7 755 4416 133 97 18 chr6 22412958 22412992 -127104045 - L1_Mur2 LINE L1 -892 4985 4962 7 755 624 27 0 0 chr6 22413095 22413169 -127103868 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 94 4580 199 46 74 chr6 22413224 22413798 -127103239 + Lx7 LINE L1 6232 6760 -936 7 756 1323 72 0 0 chr6 22413798 22413978 -127103059 + (GGA)n Simple_repeat Simple_repeat 1 180 0 7 756 4580 199 46 74 chr6 22413978 22414512 -127102525 + Lx7 LINE L1 6761 7309 -387 7 756 248 186 17 0 chr6 22414695 22414754 -127102283 + (TTTA)n Simple_repeat Simple_repeat 4 63 0 7 756 815 214 40 92 chr6 22414946 22415173 -127101864 - B3 SINE B2 -1 215 1 7 756 273 399 46 33 chr6 22415553 22415706 -127101331 + MLT1I LTR MaLR 198 352 -59 7 756 189 0 0 0 chr6 22415889 22415910 -127101127 + (A)n Simple_repeat Simple_repeat 1 21 0 7 756 559 250 39 0 chr6 22415944 22416068 -127100969 - ID_B1 SINE B4 -3 221 93 7 756 2695 80 25 17 chr6 22416068 22416518 -127100519 + RMER16 LTR ERVK 1 533 0 7 756 296 245 57 106 chr6 22416518 22416584 -127100453 - ID SINE ID -135 89 30 7 756 351 0 0 0 chr6 22416607 22416646 -127100391 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 756 1073 82 0 0 chr6 22416647 22416781 -127100256 - B1_Mus2 SINE Alu -12 135 2 7 756 866 257 64 0 chr6 22417067 22417269 -127099768 + B3 SINE B2 2 216 0 7 756 405 268 128 88 chr6 22418845 22419119 -127097918 - B4 SINE B4 -6 286 2 7 756 217 295 49 0 chr6 22419156 22419217 -127097820 + ID_B1 SINE B4 98 161 -63 7 756 2189 173 22 0 chr6 22419344 22419703 -127097334 + ORR1B2 LTR MaLR 1 367 0 7 756 183 42 0 0 chr6 22419825 22419849 -127097188 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 7 756 254 337 139 0 chr6 22419865 22419966 -127097071 + B1F2 SINE Alu 6 120 -29 7 756 241 300 120 40 chr6 22419966 22419989 -127097048 + B4A SINE B4 91 224 -68 7 756 661 287 13 0 chr6 22420786 22420943 -127096094 + RSINE1 SINE B4 3 161 -4 7 756 216 97 0 0 chr6 22421116 22421147 -127095890 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 756 350 226 110 52 chr6 22421445 22421578 -127095459 + MTEa LTR MaLR 231 379 0 7 756 309 230 0 0 chr6 22421587 22421661 -127095376 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 756 378 0 0 0 chr6 22421787 22421829 -127095208 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 7 756 534 282 83 26 chr6 22421831 22422024 -127095013 - B3 SINE B2 -11 205 2 7 756 468 235 0 0 chr6 22422035 22422150 -127094887 + CT-rich Low_complexity Low_complexity 2 116 0 7 756 1999 53 8 0 chr6 22422270 22422516 -127094521 - L1_Mus1 LINE L1 0 6567 6320 7 756 1735 26 0 0 chr6 22422625 22422818 -127094219 + B2_Mm1a SINE B2 1 193 0 7 756 978 155 14 0 chr6 22423042 22423190 -127093847 - B1_Mur4 SINE Alu 0 150 1 7 756 210 196 22 0 chr6 22423470 22423516 -127093521 - B4 SINE B4 -245 47 1 7 756 242 56 28 0 chr6 22423635 22423671 -127093366 + (TAA)n Simple_repeat Simple_repeat 3 39 0 7 756 183 156 0 0 chr6 22424400 22424432 -127092605 + T-rich Low_complexity Low_complexity 1 32 0 7 756 426 279 23 15 chr6 22424455 22424586 -127092451 - B1F1 SINE Alu 0 149 18 7 756 506 58 92 0 chr6 22425301 22425388 -127091649 + L1Md_F3 LINE L1 6490 6584 0 7 756 2950 122 14 39 chr6 22425552 22426070 -127090967 + RLTR13D6 LTR ERVK 2 506 -396 7 756 33574 78 20 7 chr6 22426073 22431383 -127085654 + L1Md_F2 LINE L1 207 5586 -297 7 756 7493 73 2 19 chr6 22431383 22432396 -127084641 + L1Md_F2 LINE L1 5587 6582 0 7 756 1135 199 93 30 chr6 22432401 22432733 -127084304 + RLTR13D6 LTR ERVK 644 996 -118 7 756 2499 21 0 0 chr6 22432733 22433015 -127084022 + L1Md_T LINE L1 5305 5586 -297 7 756 8659 30 0 0 chr6 22433015 22434008 -127083029 + L1Md_T LINE L1 5587 6579 -3 7 756 783 171 19 25 chr6 22434038 22434200 -127082837 + RLTR13D5 LTR ERVK 863 1023 0 7 756 333 0 0 0 chr6 22434252 22434289 -127082748 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 756 366 264 11 0 chr6 22434297 22434384 -127082653 - ID_B1 SINE B4 -133 91 4 7 756 274 282 218 0 chr6 22434458 22434582 -127082455 - B4A SINE B4 -141 151 1 7 756 350 308 98 0 chr6 22434606 22434739 -127082298 + MER5A DNA MER1_type 44 189 0 7 756 197 108 27 0 chr6 22437440 22437477 -127079560 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 756 194 159 0 43 chr6 22437517 22437563 -127079474 + GA-rich Low_complexity Low_complexity 1 44 0 7 756 374 282 51 13 chr6 22437735 22437893 -127079144 - HAL1 LINE L1 -700 1807 1644 7 756 1695 152 245 16 chr6 22437902 22438277 -127078760 + RMER6B LTR ERVK 1 461 0 7 756 360 309 0 0 chr6 22438372 22438469 -127078568 - B4A SINE B4 -193 99 3 7 756 477 233 12 123 chr6 22439121 22439292 -127077745 + L1MA9 LINE L1 5950 6101 -211 7 756 438 279 47 108 chr6 22439605 22439882 -127077155 + MER31-int LTR ERV1 3212 3471 -1465 7 756 257 51 26 0 chr6 22441054 22441093 -127075944 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 756 26 0 0 0 chr6 22441472 22441498 -127075539 + AT_rich Low_complexity Low_complexity 1 26 0 7 756 295 331 98 0 chr6 22441649 22441782 -127075255 + RSINE1 SINE B4 2 147 -18 7 756 396 0 0 0 chr6 22441810 22441854 -127075183 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 756 261 0 0 0 chr6 22441941 22441970 -127075067 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 756 572 182 20 0 chr6 22441972 22442071 -127074966 - B1_Mur4 SINE Alu -47 103 3 7 756 1231 263 12 37 chr6 22442332 22442656 -127074381 - Lx8 LINE L1 -609 6864 6549 7 756 351 0 0 0 chr6 22442727 22442766 -127074271 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 756 558 0 0 0 chr6 22442766 22442827 -127074210 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 756 400 241 0 18 chr6 22443666 22443776 -127073261 - Lx9 LINE L1 -3 7641 7534 7 756 396 0 0 0 chr6 22445169 22445213 -127071824 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 756 378 0 0 0 chr6 22445399 22445441 -127071596 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 756 409 131 14 5 chr6 22445587 22445701 -127071336 - B2_Mm2 SINE B2 0 195 47 7 756 1260 94 0 0 chr6 22445738 22445908 -127071129 - B2_Mm2 SINE B2 -24 171 2 7 756 1255 68 0 0 chr6 22446229 22446376 -127070661 + B1_Mm SINE Alu 1 147 0 7 756 189 0 0 0 chr6 22446419 22446440 -127070597 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 7 756 271 372 34 39 chr6 22446783 22446962 -127070075 - L1MDa LINE L1 -6243 390 213 7 756 428 253 0 7 chr6 22446981 22447132 -127069905 + (CA)n Simple_repeat Simple_repeat 2 151 0 7 756 308 311 107 0 chr6 22447172 22447294 -127069743 - L1MDa LINE L1 -6461 172 38 7 756 252 320 13 0 chr6 22448189 22448267 -127068770 - Helitron1Nb_Mam RC Helitron -1004 112 34 7 756 1526 60 22 0 chr6 22450784 22450967 -127066070 + B2_Mm2 SINE B2 2 188 -7 7 756 933 165 64 6 chr6 22450982 22451153 -127065884 - B2_Mm2 SINE B2 -14 181 1 7 756 724 167 0 0 chr6 22451828 22451942 -127065095 - B1_Mur4 SINE Alu -5 145 32 7 756 22 70 0 0 chr6 22452486 22452529 -127064508 + AT_rich Low_complexity Low_complexity 1 43 0 7 756 305 317 119 36 chr6 22452768 22452961 -127064076 - L3b LINE CR1 -251 231 23 7 756 500 293 7 14 chr6 22453314 22453456 -127063581 + ID_B1 SINE B4 84 224 0 7 756 193 283 16 62 chr6 22453927 22453991 -127063046 + MIR SINE MIR 89 149 -59 7 756 322 258 417 32 chr6 22454141 22454297 -127062740 + ID_B1 SINE B4 7 222 -2 7 756 1132 215 38 19 chr6 22454595 22454804 -127062233 + B3 SINE B2 3 215 -1 7 756 1511 72 0 30 chr6 22454829 22455029 -127062008 + B2_Mm2 SINE B2 2 195 0 7 756 1202 121 0 6 chr6 22456528 22456703 -127060334 + B2_Mm2 SINE B2 1 174 -21 7 756 420 82 0 0 chr6 22458182 22458243 -127058794 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 756 248 250 68 27 chr6 22459958 22460032 -127057005 + LTR88a LTR Gypsy 631 707 -109 7 756 219 150 0 0 chr6 22460085 22460125 -127056912 + (T)n Simple_repeat Simple_repeat 1 40 0 7 756 789 216 77 39 chr6 22460796 22461003 -127056034 - B3 SINE B2 -1 215 1 7 756 2253 69 3 84 chr6 22461210 22461557 -127055480 - ORR1A2 LTR MaLR -8 319 1 7 756 2781 101 3 5 chr6 22461696 22462073 -127054964 - Lx LINE L1 -7 6647 6272 7 756 4753 123 18 0 chr6 22462074 22462892 -127054145 - Lx LINE L1 -683 5955 5113 7 756 1273 39 29 14 chr6 22463815 22464024 -127053013 + (CACCAT)n Simple_repeat Simple_repeat 1 211 0 7 756 229 176 0 38 chr6 22464084 22464137 -127052900 + CT-rich Low_complexity Low_complexity 2 52 0 7 756 1030 166 166 0 chr6 22464184 22464377 -127052660 - URR1B DNA MER1_type 0 225 1 7 756 1212 102 0 0 chr6 22466136 22466460 -127050577 + (CA)n Simple_repeat Simple_repeat 1 324 0 7 756 9324 52 2 2 chr6 22466654 22467795 -127049242 - L1Md_F2 LINE L1 -145 5738 4598 8 756 6044 107 0 19 chr6 22467800 22468624 -127048413 + L1Md_F2 LINE L1 5763 6570 -12 8 756 779 93 8 0 chr6 22469411 22469529 -127047508 + (TCCC)n Simple_repeat Simple_repeat 1 119 0 8 756 848 168 73 67 chr6 22469580 22469759 -127047278 - B2_Mm2 SINE B2 -15 180 1 8 756 364 289 94 28 chr6 22469999 22470162 -127046875 - MLT1A LTR MaLR 0 374 184 8 756 471 35 0 0 chr6 22470202 22470259 -127046778 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 756 901 321 70 38 chr6 22470330 22470699 -127046338 + MTC LTR MaLR 18 398 -23 8 756 357 273 58 91 chr6 22470740 22470861 -127046176 - MLT1A LTR MaLR -234 140 24 8 756 489 34 0 0 chr6 22470968 22471027 -127046010 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 756 1047 107 0 28 chr6 22471032 22471176 -127045861 - B1_Mus1 SINE Alu -7 141 2 8 756 449 350 79 51 chr6 22471192 22471508 -127045529 - LTR16B LTR ERVL -154 326 2 8 756 3635 52 0 0 chr6 22471923 22472328 -127044709 + MTB_Mm LTR MaLR 3 407 0 8 756 962 227 122 45 chr6 22472457 22472743 -127044294 + Lx6 LINE L1 7149 7456 -4 8 756 1112 169 119 5 chr6 22472788 22472990 -127044047 - URR1A DNA MER1_type -1 225 1 8 756 771 42 0 0 chr6 22474309 22474404 -127042633 + (TC)n Simple_repeat Simple_repeat 2 96 0 8 756 665 173 39 0 chr6 22474841 22474968 -127042069 - B1_Mur1 SINE Alu 0 149 18 8 756 1128 89 0 0 chr6 22474977 22475112 -127041925 + B1_Mus2 SINE Alu 3 137 -10 8 756 459 0 0 0 chr6 22475115 22475166 -127041871 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 8 756 22 0 0 0 chr6 22475277 22475299 -127041738 + AT_rich Low_complexity Low_complexity 1 22 0 8 756 886 320 16 53 chr6 22475481 22475867 -127041170 - L1MA6 LINE L1 -207 6093 5716 8 756 1938 247 5 0 chr6 22475867 22476284 -127040753 + MTD LTR MaLR 1 419 0 8 756 886 320 16 53 chr6 22476284 22476332 -127040705 - L1MA6 LINE L1 -585 5715 5675 8 756 617 97 0 10 chr6 22476344 22476448 -127040589 + (TC)n Simple_repeat Simple_repeat 2 104 0 8 756 289 231 208 79 chr6 22476450 22476665 -127040372 - L1MA6 LINE L1 -664 5648 5403 8 756 694 252 59 28 chr6 22476722 22477012 -127040025 - L1MA6 LINE L1 -1478 4665 4367 8 756 510 276 24 16 chr6 22477030 22477155 -127039882 - B4A SINE B4 0 292 167 8 756 782 126 56 0 chr6 22477318 22477608 -127039429 + (TCTA)n Simple_repeat Simple_repeat 1 306 0 8 756 625 275 88 0 chr6 22477793 22477953 -127039084 + B4A SINE B4 117 290 -2 8 756 41617 12 1 6 chr6 22478122 22484317 -127032720 - L1Md_A LINE L1 -1 6581 422 8 756 800 227 144 11 chr6 22484431 22484618 -127032419 - B3 SINE B2 -4 212 1 8 756 432 0 0 0 chr6 22484900 22484948 -127032089 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 756 829 262 79 4 chr6 22485372 22485625 -127031412 - Lx8 LINE L1 -467 7006 6735 8 756 2685 286 94 40 chr6 22485794 22486612 -127030425 - Lx9 LINE L1 -354 7290 6465 8 756 198 0 0 0 chr6 22486612 22486634 -127030403 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 756 2685 286 94 40 chr6 22486634 22486954 -127030083 - Lx9 LINE L1 -1180 6464 6090 8 756 303 161 32 0 chr6 22487418 22487480 -127029557 - RLTR1B LTR ERV1 -106 406 343 8 756 247 194 56 56 chr6 22487453 22487524 -127029513 - RLTR1B LTR ERV1 -87 425 355 8 756 837 168 21 0 chr6 22487524 22487667 -127029370 + Lx6 LINE L1 7311 7456 -4 8 756 223 338 15 0 chr6 22487795 22487863 -127029174 - ID4 SINE ID -5 78 10 8 756 435 311 80 133 chr6 22488065 22488477 -127028560 - Zaphod DNA Tip100 -3611 420 31 8 756 994 301 56 25 chr6 22488585 22488943 -127028094 - MTE2b LTR MaLR -7 372 4 8 756 522 46 0 0 chr6 22489821 22489886 -127027151 + (GGGA)n Simple_repeat Simple_repeat 1 65 0 8 756 1147 221 14 0 chr6 22490129 22490342 -127026695 + B3 SINE B2 1 216 0 8 756 832 297 117 15 chr6 22490386 22490659 -127026378 - MTEb LTR MaLR -28 351 51 8 756 748 143 7 7 chr6 22490677 22490818 -127026219 + CT-rich Low_complexity Low_complexity 1 141 0 8 756 588 281 90 45 chr6 22490823 22491024 -127026013 - ID_B1 SINE B4 -14 210 1 8 756 422 246 24 0 chr6 22491707 22491920 -127025117 + (CCCTA)n Simple_repeat Simple_repeat 1 218 0 8 756 279 0 0 0 chr6 22492294 22492325 -127024712 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 756 2415 206 147 16 chr6 22492352 22493084 -127023953 + Lx5 LINE L1 5550 6374 -676 8 756 1380 296 59 18 chr6 22493075 22493608 -127023429 + Lx5 LINE L1 6479 7405 -55 8 756 6354 40 0 4 chr6 22493691 22494411 -127022626 - L1Md_F2 LINE L1 -14 6568 5852 8 756 1211 47 7 0 chr6 22495977 22496125 -127020912 - L1_Mus1 LINE L1 -1 6566 6418 8 756 235 113 0 36 chr6 22497668 22497723 -127019314 + (TTC)n Simple_repeat Simple_repeat 2 54 0 8 756 867 183 0 0 chr6 22497724 22497904 -127019133 + CT-rich Low_complexity Low_complexity 1 180 0 8 756 2726 228 88 18 chr6 22497905 22498572 -127018465 - Lx6 LINE L1 0 7460 6747 8 756 219 364 65 16 chr6 22499378 22499501 -127017536 - L3 LINE CR1 -15 4474 4346 8 756 391 362 7 7 chr6 22499762 22499904 -127017133 + B1F1 SINE Alu 1 142 -7 8 756 213 39 0 0 chr6 22499905 22499931 -127017106 + (CCAA)n Simple_repeat Simple_repeat 4 29 0 8 756 333 0 0 0 chr6 22499937 22499974 -127017063 + (CCA)n Simple_repeat Simple_repeat 1 37 0 8 756 209 180 0 20 chr6 22500026 22500077 -127016960 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 756 29 0 0 0 chr6 22500143 22500172 -127016865 + AT_rich Low_complexity Low_complexity 1 29 0 2 756 31 96 0 0 chr6 22500516 22500610 -127016427 + AT_rich Low_complexity Low_complexity 1 94 0 3 756 201 164 0 82 chr6 22501544 22502322 -127014715 + (CATAT)n Simple_repeat Simple_repeat 1 713 0 4 756 292 338 28 0 chr6 22502779 22502921 -127014116 + L1M3 LINE L1 5494 5639 -529 5 756 7678 58 45 39 chr6 22503038 22503373 -127013664 - MusHAL1 LINE L1 -550 2162 1871 6 756 1196 75 0 0 chr6 22503373 22503520 -127013517 - B1_Mus1 SINE Alu 0 148 2 7 756 7678 58 45 39 chr6 22503520 22504379 -127012658 - MusHAL1 LINE L1 -842 1870 960 6 756 610 287 48 68 chr6 22505125 22505534 -127011503 - RLTR16 LTR ERVK -212 480 31 8 756 21 57 0 0 chr6 22505664 22505699 -127011338 + AT_rich Low_complexity Low_complexity 1 35 0 9 756 253 320 67 0 chr6 22505934 22506009 -127011028 + MamRep38 DNA hAT 3 82 -213 1 756 1311 79 10 16 chr6 22506382 22506574 -127010463 + B2_Mm1a SINE B2 2 192 -1 1 756 427 339 80 73 chr6 22506808 22507024 -127010013 + L1MD2 LINE L1 5910 6130 -229 1 756 324 0 0 0 chr6 22507024 22507060 -127009977 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 756 427 339 80 73 chr6 22507060 22507266 -127009771 + L1MD2 LINE L1 6131 6335 -24 1 756 396 0 0 0 chr6 22507342 22507386 -127009651 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 756 320 310 82 85 chr6 22507690 22507972 -127009065 - ORR1E LTR MaLR 0 359 79 1 756 703 229 0 0 chr6 22508257 22508388 -127008649 - B1_Mur2 SINE Alu -12 137 7 1 756 296 286 57 9 chr6 22508599 22508705 -127008332 - Lx8 LINE L1 -1545 5928 5818 1 756 1550 303 46 13 chr6 22508717 22509342 -127007695 + Lx8 LINE L1 6561 7206 -267 1 756 2230 193 59 19 chr6 22511997 22512519 -127004518 + Lx5 LINE L1 5877 6419 -631 1 756 2464 216 39 0 chr6 22512542 22513052 -127003985 + Lx5 LINE L1 6518 7047 -3 1 756 28 48 0 0 chr6 22513687 22513729 -127003308 + AT_rich Low_complexity Low_complexity 1 42 0 2 756 22 0 0 0 chr6 22513770 22513792 -127003245 + AT_rich Low_complexity Low_complexity 1 22 0 2 756 579 263 51 32 chr6 22513804 22513961 -127003076 - RSINE1 SINE B4 -5 160 1 2 756 1144 157 10 34 chr6 22514398 22514603 -127002434 + URR1B DNA MER1_type 26 225 0 2 756 279 300 76 48 chr6 22514603 22514678 -127002359 + B1F SINE Alu 59 136 -13 2 756 4540 177 123 11 chr6 22514686 22515719 -127001318 - Lx9 LINE L1 -9 7635 6487 2 756 3275 144 25 13 chr6 22515761 22516289 -127000748 + Lx4A LINE L1 6522 7055 -3 2 756 380 55 18 0 chr6 22516289 22516344 -127000693 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 2 756 891 163 0 14 chr6 22517374 22517517 -126999520 + B1_Mus1 SINE Alu 5 145 -3 2 756 37 52 0 0 chr6 22517532 22517590 -126999447 + AT_rich Low_complexity Low_complexity 1 58 0 2 756 326 326 14 55 chr6 22518374 22518520 -126998517 + L1MC LINE L1 5305 5444 -2438 3 756 269 265 0 0 chr6 22518741 22518824 -126998213 + T-rich Low_complexity Low_complexity 1 83 0 3 756 242 72 0 23 chr6 22518825 22518868 -126998169 - Lx3A LINE L1 -6 6975 6934 3 756 8608 91 3 19 chr6 22518866 22519711 -126997326 - Lx3A LINE L1 -782 6199 5372 3 756 1373 88 102 0 chr6 22519711 22519791 -126997246 - L1_Mus3 LINE L1 0 6638 6557 3 756 204 40 0 0 chr6 22519791 22519816 -126997221 + (CCCCCT)n Simple_repeat Simple_repeat 1 25 0 3 756 1373 88 102 0 chr6 22519816 22519951 -126997086 - L1_Mus3 LINE L1 -82 6556 6402 3 756 8608 78 5 25 chr6 22519951 22520735 -126996302 - Lx3A LINE L1 -515 5371 4605 3 756 382 332 44 89 chr6 22521933 22522158 -126994879 - B4 SINE B4 -26 266 52 3 756 302 298 38 9 chr6 22522945 22523050 -126993987 - MIR SINE MIR -102 160 53 3 756 737 253 126 6 chr6 22523063 22523238 -126993799 - B3 SINE B2 -20 196 1 3 756 594 232 9 0 chr6 22523899 22524011 -126993026 - B1_Mus2 SINE Alu -29 118 6 3 756 2419 79 36 3 chr6 22524053 22524382 -126992655 - L1_Mus4 LINE L1 -5 6631 6292 3 756 2434 162 34 14 chr6 22525008 22525219 -126991818 + MTC LTR MaLR 1 225 -196 4 756 3102 68 5 2 chr6 22525219 22525618 -126991419 - MTB LTR MaLR 0 400 1 4 756 2434 162 34 14 chr6 22525618 22525819 -126991218 + MTC LTR MaLR 226 421 0 4 756 5900 152 18 2 chr6 22525994 22526937 -126990100 + RMER17B LTR ERVK 1 958 0 4 756 2068 138 0 80 chr6 22527268 22527654 -126989383 + RLTR14 LTR ERV1 3 357 -25 4 756 1878 215 98 41 chr6 22527675 22527722 -126989315 + RLTR20D LTR ERVK 51 97 -471 4 756 7280 54 5 1 chr6 22527722 22528612 -126988425 + RLTR13B1 LTR ERVK 1 893 0 4 756 1878 215 98 41 chr6 22528612 22529054 -126987983 + RLTR20D LTR ERVK 98 568 0 4 756 189 0 0 0 chr6 22529266 22529287 -126987750 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 756 750 169 17 0 chr6 22529301 22529419 -126987618 - B1_Mur3 SINE Alu -15 134 15 4 756 1038 111 25 6 chr6 22529422 22529585 -126987452 + B2_Mm1a SINE B2 2 167 -26 4 756 499 261 156 74 chr6 22529638 22529822 -126987215 - L1MC LINE L1 -905 5241 5031 4 756 203 0 0 36 chr6 22529822 22529850 -126987187 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 756 499 261 156 74 chr6 22529850 22529934 -126987103 - L1MC LINE L1 -1116 5030 4951 4 756 416 318 13 33 chr6 22529963 22530116 -126986921 + ORR1E LTR MaLR 158 307 -52 5 756 6850 62 40 2 chr6 22530161 22531100 -126985937 - L1_Mus1 LINE L1 0 6567 5593 5 756 265 296 12 0 chr6 22531810 22531891 -126985146 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 756 1112 96 0 0 chr6 22531975 22532121 -126984916 + B1_Mus2 SINE Alu 2 147 0 5 756 22 0 0 0 chr6 22532383 22532405 -126984632 + AT_rich Low_complexity Low_complexity 1 22 0 5 756 882 287 92 7 chr6 22532452 22532757 -126984280 - MER2 DNA MER2_type -4 341 11 5 756 306 272 62 0 chr6 22533823 22533904 -126983133 - HAL1-3A_ME LINE L1 -796 2062 1977 5 756 688 247 44 6 chr6 22533906 22534065 -126982972 - RSINE1 SINE B4 0 165 1 5 756 1093 236 92 77 chr6 22534080 22534429 -126982608 + ORR1D2 LTR MaLR 17 370 0 5 756 3668 183 30 170 chr6 22534526 22534916 -126982121 - L1_Mur3 LINE L1 -2738 3142 2758 6 756 932 116 19 14 chr6 22534916 22535108 -126981929 + RLTR9E LTR ERVK 1 171 -249 6 756 3668 183 30 170 chr6 22535108 22536001 -126981036 - L1_Mur3 LINE L1 -2738 2757 1875 6 756 1435 268 75 67 chr6 22536001 22537444 -126979593 - L1_Mur3 LINE L1 -4375 1505 49 6 756 7687 108 22 21 chr6 22537823 22539028 -126978009 + Lx3A LINE L1 5761 6966 -15 6 756 195 42 0 0 chr6 22539028 22539052 -126977985 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 756 290 250 0 0 chr6 22539977 22540049 -126976988 + PB1D10 SINE Alu 44 115 -2 6 756 255 326 109 36 chr6 22540341 22540478 -126976559 + LTR41 LTR ERVL 2 148 -620 6 756 489 245 9 9 chr6 22542352 22542459 -126974578 + PB1D10 SINE Alu 1 107 -10 6 756 262 322 34 0 chr6 22542769 22542858 -126974179 - ID4_ SINE ID -49 103 12 6 756 225 338 0 86 chr6 22542796 22542877 -126974160 - ID SINE ID -150 74 1 6 756 191 36 36 0 chr6 22543072 22543100 -126973937 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 756 4749 135 13 12 chr6 22543132 22543897 -126973140 - Lx LINE L1 0 6654 5889 7 756 12200 73 19 89 chr6 22543897 22544262 -126972775 - L1VL4 LINE L1 -652 2907 2530 7 756 617 38 12 0 chr6 22544262 22544342 -126972695 + (TC)n Simple_repeat Simple_repeat 2 82 0 7 94 12200 73 19 89 chr6 22544342 22544595 -126972442 - L1VL4 LINE L1 -1030 2529 2406 7 757 1424 74 59 0 chr6 22544595 22544797 -126972240 + L1_Mus2 LINE L1 6353 6566 0 7 757 12200 79 18 81 chr6 22544797 22546836 -126970201 - L1VL4 LINE L1 -1154 2405 400 7 757 239 71 24 0 chr6 22546841 22546883 -126970154 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 7 757 678 192 0 131 chr6 22546888 22547056 -126969981 - B1_Mus1 SINE Alu -1 147 2 7 757 342 0 0 0 chr6 22547439 22547477 -126969560 + (TAA)n Simple_repeat Simple_repeat 2 39 0 7 757 3114 43 0 2 chr6 22547712 22548108 -126968929 + L1Md_F3 LINE L1 5192 5586 -297 7 757 8295 37 5 0 chr6 22548108 22549099 -126967938 + L1Md_F3 LINE L1 5587 6582 -2 7 757 339 150 0 0 chr6 22549279 22549339 -126967698 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 757 403 323 30 30 chr6 22549387 22549521 -126967516 - RSINE1 SINE B4 -29 136 3 7 757 596 122 8 0 chr6 22549835 22549958 -126967079 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 8 757 1021 166 22 4 chr6 22550353 22550626 -126966411 + ORR1C1 LTR MaLR 1 378 0 8 757 6059 158 109 19 chr6 22550747 22551097 -126965940 - RMER12 LTR ERVK 0 1322 920 8 757 483 48 0 0 chr6 22551097 22551159 -126965878 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 757 6059 158 109 19 chr6 22551159 22551265 -126965772 - RMER12 LTR ERVK -403 919 772 8 757 357 24 0 0 chr6 22551265 22551307 -126965730 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 757 6059 158 109 19 chr6 22551307 22552057 -126964980 - RMER12 LTR ERVK -551 771 7 8 757 358 348 101 0 chr6 22552588 22552726 -126964311 + RSINE1 SINE B4 2 153 -12 8 757 24 32 0 0 chr6 22553283 22553314 -126963723 + AT_rich Low_complexity Low_complexity 1 31 0 8 757 276 157 0 38 chr6 22553724 22553777 -126963260 - MTE2b LTR MaLR -51 328 278 8 757 978 73 0 0 chr6 22553951 22554075 -126962962 + B1_Mm SINE Alu 16 139 -8 8 757 342 0 0 0 chr6 22554075 22554113 -126962924 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 8 757 3450 155 110 6 chr6 22554138 22554933 -126962104 + L1_Mus1 LINE L1 429 1306 -5418 9 757 8890 82 16 2 chr6 22554932 22556990 -126960047 + L1_Mus1 LINE L1 4511 6567 0 9 757 309 51 0 0 chr6 22557063 22557102 -126959935 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 757 354 23 0 0 chr6 22557819 22557862 -126959175 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 757 23 68 0 0 chr6 22558343 22558387 -126958650 + AT_rich Low_complexity Low_complexity 1 44 0 9 757 415 369 90 16 chr6 22558449 22558760 -126958277 - L1ME1 LINE L1 -15 6164 5831 9 757 24 32 0 0 chr6 22559246 22559277 -126957760 + AT_rich Low_complexity Low_complexity 1 31 0 9 757 680 243 55 0 chr6 22559277 22559458 -126957579 - Lx6 LINE L1 -40 7420 7230 9 757 470 288 16 15 chr6 22559508 22559719 -126957318 - L1ME1 LINE L1 -1521 4619 4408 9 757 729 258 179 19 chr6 22559751 22559863 -126957174 + Lx8 LINE L1 7115 7245 -228 9 757 378 0 0 0 chr6 22559863 22559905 -126957132 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 757 729 258 179 19 chr6 22559905 22560100 -126956937 + Lx8 LINE L1 7246 7470 -3 9 757 595 253 125 29 chr6 22560105 22560480 -126956557 - L1ME1 LINE L1 -1712 4434 4024 9 757 26 22 0 42 chr6 22560643 22560659 -126956378 + AT_rich Low_complexity Low_complexity 1 15 0 9 757 825 191 13 13 chr6 22560659 22560808 -126956229 - B1_Mur2 SINE Alu 0 149 1 1 757 26 22 0 42 chr6 22560808 22560839 -126956198 + AT_rich Low_complexity Low_complexity 1 31 0 1 757 377 300 28 0 chr6 22560991 22561202 -126955835 - L1ME1 LINE L1 -2304 3842 3617 9 757 1251 34 0 0 chr6 22561392 22561539 -126955498 + B1_Mus2 SINE Alu 1 147 0 1 757 13499 95 30 44 chr6 22561550 22563305 -126953732 + L1VL2 LINE L1 9 1577 -2038 1 757 3402 69 50 7 chr6 22563305 22563760 -126953277 - MT2C_Mm LTR ERVL 0 475 1 1 757 13499 75 16 9 chr6 22563760 22565170 -126951867 + L1VL2 LINE L1 1578 2988 -627 1 757 1518 78 86 0 chr6 22566226 22566458 -126950579 - L1_Mur1 LINE L1 -733 5153 4902 1 757 2305 69 101 0 chr6 22566459 22566776 -126950261 + Lx3_Mus LINE L1 6661 7009 0 1 757 225 163 32 85 chr6 22566777 22566871 -126950166 + A-rich Low_complexity Low_complexity 1 89 0 1 757 718 302 102 39 chr6 22568276 22569070 -126947967 - L1MC2 LINE L1 -36 6472 5629 1 757 604 250 7 7 chr6 22569066 22569215 -126947822 - Lx9 LINE L1 -282 7362 7214 1 757 654 211 17 11 chr6 22569226 22569403 -126947634 - L1MC2 LINE L1 -819 5502 5325 1 757 389 307 50 14 chr6 22569419 22569640 -126947397 - L1MC2 LINE L1 -1793 4528 4300 1 757 531 317 120 77 chr6 22569663 22570104 -126946933 - L1MC2 LINE L1 -4921 1587 1128 1 757 338 256 182 8 chr6 22570122 22570248 -126946789 - RSINE1 SINE B4 -15 150 3 1 757 502 286 30 0 chr6 22570249 22570452 -126946585 - L1MC2 LINE L1 -5348 1160 952 1 757 711 290 57 31 chr6 22570452 22570680 -126946357 + MTEa LTR MaLR 1 234 -145 1 757 345 270 8 57 chr6 22570771 22570893 -126946144 + RMER2 LTR ERV1 1 116 -451 1 757 606 240 75 94 chr6 22570920 22571187 -126945850 + RMER2 LTR ERV1 288 549 -18 1 757 1479 101 54 18 chr6 22571269 22571491 -126945546 + RMER6D LTR ERVK 1 230 -490 1 757 1218 156 10 5 chr6 22571595 22571801 -126945236 + RMER6D LTR ERVK 484 690 0 1 757 299 306 57 83 chr6 22572071 22572353 -126944684 + RLTR12B LTR ERVK 34 278 -81 1 757 1876 178 12 0 chr6 22572367 22572704 -126944333 + RLTR15 LTR ERVK 1 341 -18 1 757 219 98 38 38 chr6 22572712 22572765 -126944272 + (TTAA)n Simple_repeat Simple_repeat 1 53 0 1 757 24 53 0 0 chr6 22573745 22573783 -126943254 + AT_rich Low_complexity Low_complexity 1 38 0 1 757 523 137 8 31 chr6 22574416 22574544 -126942493 + (TA)n Simple_repeat Simple_repeat 2 126 0 1 757 1079 88 0 6 chr6 22574551 22574711 -126942326 - L1_Mm LINE L1 -806 5077 4919 1 757 5070 25 11 0 chr6 22574674 22575311 -126941726 + L1Md_T LINE L1 4943 5586 -297 1 757 9020 6 0 0 chr6 22575311 22576307 -126940730 + L1Md_T LINE L1 5587 6582 0 1 757 3135 119 2 6 chr6 22576327 22576827 -126940210 - L1_Mm LINE L1 -937 4946 4449 1 757 594 299 66 62 chr6 22577029 22577318 -126939719 - B4A SINE B4 0 292 3 1 757 7167 30 0 0 chr6 22577488 22578368 -126938669 - L1Md_A LINE L1 -2 6580 5701 1 757 308 176 0 14 chr6 22578873 22578942 -126938095 + CT-rich Low_complexity Low_complexity 1 68 0 1 757 572 202 39 0 chr6 22578942 22579046 -126937991 - B1_Mur1 SINE Alu 0 149 42 1 757 275 0 0 161 chr6 22579049 22579192 -126937845 + (CTCTG)n Simple_repeat Simple_repeat 1 120 0 1 757 250 214 36 0 chr6 22579192 22579248 -126937789 - B1F2 SINE Alu -91 58 1 1 757 3640 140 13 41 chr6 22580907 22581540 -126935497 - Lx LINE L1 -1 6653 6039 1 757 232 351 84 10 chr6 22581580 22581702 -126935335 - B1F SINE Alu -17 132 3 1 757 7151 52 11 1 chr6 22582168 22583052 -126933985 + RLTR13B1 LTR ERVK 1 893 0 1 757 21 0 0 0 chr6 22583244 22583265 -126933772 + AT_rich Low_complexity Low_complexity 1 21 0 1 757 384 311 82 58 chr6 22583296 22583504 -126933533 + B4A SINE B4 1 213 -79 1 757 257 286 13 0 chr6 22583641 22583718 -126933319 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 757 27 49 0 0 chr6 22585753 22585794 -126931243 + AT_rich Low_complexity Low_complexity 1 41 0 1 757 21 0 0 0 chr6 22585940 22585961 -126931076 + AT_rich Low_complexity Low_complexity 1 21 0 1 757 541 259 45 58 chr6 22586446 22586602 -126930435 + MT2A LTR ERVL 1 154 -379 1 757 341 272 58 0 chr6 22586575 22586678 -126930359 + MT2A LTR ERVL 467 575 -26 1 757 23 86 0 0 chr6 22586678 22586736 -126930301 + AT_rich Low_complexity Low_complexity 1 58 0 1 757 278 163 0 0 chr6 22586758 22586801 -126930236 + MT2A LTR ERVL 542 584 0 1 757 615 268 154 11 chr6 22587284 22587558 -126929479 + MTEb LTR MaLR 72 379 0 1 757 1134 309 57 3 chr6 22587558 22587889 -126929148 + MTEb-int LTR MaLR 1 349 -1231 1 757 765 0 0 0 chr6 22587927 22588012 -126929025 + (CAAAG)n Simple_repeat Simple_repeat 2 86 0 1 757 1203 54 0 0 chr6 22588070 22588217 -126928820 - B1_Mus2 SINE Alu 0 147 1 1 757 749 269 75 139 chr6 22590039 22590493 -126926544 - RLTR23 LTR ERV1 0 430 6 1 757 182 268 207 0 chr6 22590690 22590772 -126926265 + MIRm SINE MIR 178 276 0 1 757 228 284 44 33 chr6 22590800 22590891 -126926146 - MLT1A LTR MaLR -3 405 314 1 757 2189 137 49 5 chr6 22591188 22591556 -126925481 - RMER6B LTR ERVK 0 461 78 1 757 434 273 113 28 chr6 22592291 22592468 -126924569 - MLT1A LTR MaLR -160 214 23 1 757 1147 64 0 0 chr6 22592624 22592765 -126924272 + B1_Mus1 SINE Alu 2 142 -6 1 757 978 281 98 55 chr6 22593352 22593680 -126923357 - MTE2a LTR MaLR -8 371 30 1 757 2636 105 24 22 chr6 22594052 22594469 -126922568 - L1_Mus4 LINE L1 -7 6629 6212 1 757 1051 46 0 0 chr6 22594470 22594600 -126922437 + B1_Mus1 SINE Alu 19 148 0 1 757 5437 65 1 18 chr6 22594765 22595762 -126921275 + L1Md_A LINE L1 1 752 -5972 1 757 39484 5 0 0 chr6 22595751 22601744 -126915293 + L1Md_A LINE L1 1 5993 -589 1 757 1710 5 0 0 chr6 22601744 22601938 -126915099 + L1Md_A LINE L1 6389 6582 0 1 757 33 25 0 0 chr6 22602307 22602347 -126914690 + AT_rich Low_complexity Low_complexity 1 40 0 1 757 632 269 46 51 chr6 22602351 22602547 -126914490 - B3A SINE B2 -2 196 2 1 757 426 313 70 88 chr6 22602548 22603062 -126913975 + L1M1 LINE L1 5305 5809 -491 1 757 364 220 85 78 chr6 22603061 22603214 -126913823 + L1MA4 LINE L1 5765 5918 -382 1 757 510 170 28 0 chr6 22603253 22603359 -126913678 + Lx9 LINE L1 7387 7495 -149 1 757 405 0 0 0 chr6 22603359 22603404 -126913633 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 757 245 197 16 0 chr6 22603404 22603465 -126913572 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 757 710 302 110 16 chr6 22603649 22603755 -126913282 + B4A SINE B4 1 117 -175 1 757 2189 63 0 14 chr6 22603755 22604046 -126912991 - L1Md_A LINE L1 -2 6580 6294 1 757 710 302 110 16 chr6 22604046 22604185 -126912852 + B4A SINE B4 118 269 -23 1 757 210 268 0 0 chr6 22604742 22604798 -126912239 + T-rich Low_complexity Low_complexity 1 56 0 1 757 225 65 0 0 chr6 22605023 22605054 -126911983 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 757 332 279 0 0 chr6 22605088 22605167 -126911870 - ID4_ SINE ID -3 80 2 1 757 276 289 149 0 chr6 22605179 22605300 -126911737 - MLT2B1 LTR ERVL -92 475 337 1 757 3425 169 71 26 chr6 22605745 22605891 -126911146 - RMER1A Other Other -3 1027 889 1 757 180 0 0 0 chr6 22605891 22605911 -126911126 + (CCA)n Simple_repeat Simple_repeat 1 20 0 1 757 3425 192 61 31 chr6 22605911 22606596 -126910441 - RMER1A Other Other -142 888 275 1 757 695 311 73 10 chr6 22606790 22607092 -126909945 - ERVL-B4-int LTR ERVL -2078 3636 3316 1 757 1897 129 93 78 chr6 22607092 22607555 -126909482 + IAPLTR2_Mm LTR ERVK 1 470 -5 1 757 3382 115 30 33 chr6 22607560 22608181 -126908856 + IAPEz-int LTR ERVK 3 662 -5819 1 757 2470 85 0 3 chr6 22608181 22608524 -126908513 + IAPEz-int LTR ERVK 1359 1700 -4781 1 757 5828 70 12 2 chr6 22608519 22609321 -126907716 + IAPEz-int LTR ERVK 5653 6462 -19 1 757 3545 29 0 0 chr6 22609321 22609734 -126907303 - L1Md_T LINE L1 -1 6581 6169 1 757 2689 37 0 4 chr6 22609734 22610081 -126906956 + L1Md_T LINE L1 5807 6491 -517 1 757 1900 115 106 96 chr6 22610092 22610562 -126906475 + IAPLTR2_Mm LTR ERVK 1 475 0 1 757 526 345 61 21 chr6 22610562 22611140 -126905897 - ERVL-B4-int LTR ERVL -2406 3261 2661 1 757 1778 278 46 33 chr6 22611180 22611812 -126905225 - ERVL-B4-int LTR ERVL -3617 2097 1458 1 757 992 264 113 5 chr6 22611854 22612242 -126904795 - ERVL-B4-int LTR ERVL -4333 1381 952 1 757 7477 65 1 0 chr6 22612541 22613630 -126903407 - L1_Mus1 LINE L1 -3 6564 5475 1 757 197 369 48 19 chr6 22613647 22613752 -126903285 - MIR SINE MIR -136 126 19 1 757 949 199 39 19 chr6 22614982 22615201 -126901836 - MTC LTR MaLR 0 421 109 1 757 396 134 0 6 chr6 22615208 22615286 -126901751 - MusHAL1 LINE L1 -2583 1332 1258 1 757 394 152 32 11 chr6 22615294 22615387 -126901650 + RMER1B Other Other 965 1059 -7 1 757 1292 198 8 28 chr6 22615450 22615704 -126901333 - MTC LTR MaLR -172 249 1 1 757 349 265 56 71 chr6 22615958 22616084 -126900953 - MLT1C LTR MaLR -327 140 17 1 757 21 71 0 0 chr6 22616164 22616206 -126900831 + AT_rich Low_complexity Low_complexity 1 42 0 1 757 317 333 0 22 chr6 22616236 22616371 -126900666 - Lx6 LINE L1 -43 7417 7286 1 757 458 0 0 0 chr6 22616372 22616424 -126900613 - MTB LTR MaLR 0 400 349 1 757 262 293 0 0 chr6 22616434 22616492 -126900545 - Lx4A LINE L1 -130 6928 6871 1 757 392 108 0 0 chr6 22616517 22616582 -126900455 - L1_Mur2 LINE L1 -4546 1331 1267 1 757 386 187 22 0 chr6 22616604 22616695 -126900342 + RMER1B Other Other 967 1059 -7 1 757 721 209 16 0 chr6 22617433 22617562 -126899475 + B3A SINE B2 38 168 -30 1 757 610 13 25 0 chr6 22617570 22617649 -126899388 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 757 2205 73 33 3 chr6 22617744 22618044 -126898993 + Lx3_Mus LINE L1 6701 7009 0 1 757 5170 140 71 1 chr6 22619109 22619951 -126897086 + Lx LINE L1 5751 6651 -3 1 757 587 289 77 26 chr6 22619969 22620125 -126896912 - B3A SINE B2 -33 165 2 1 757 198 308 64 0 chr6 22621540 22621618 -126895419 - MIR SINE MIR -139 123 41 1 757 625 300 0 30 chr6 22622708 22622873 -126894164 + RSINE1 SINE B4 2 161 -4 1 757 402 21 0 0 chr6 22622925 22622972 -126894065 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 757 780 240 57 52 chr6 22623142 22623371 -126893666 + ORR1D2 LTR MaLR 141 370 0 1 757 1340 280 64 52 chr6 22623371 22623887 -126893150 + ORR1D2-int LTR MaLR 1 522 -848 1 757 484 136 96 10 chr6 22623888 22623992 -126893045 + ORR1D2-int LTR MaLR 1329 1441 -139 1 757 216 0 0 0 chr6 22624363 22624387 -126892650 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 757 824 155 78 0 chr6 22624387 22624516 -126892521 - B1_Mur2 SINE Alu -10 139 1 1 757 231 297 112 43 chr6 22625198 22625314 -126891723 - MIRb SINE MIR -139 129 6 1 757 307 314 78 31 chr6 22626165 22626293 -126890744 - B1F1 SINE Alu -5 144 11 1 757 1236 34 0 7 chr6 22627750 22627897 -126889140 - B1_Mus2 SINE Alu 0 147 2 1 757 305 364 13 26 chr6 22628950 22629105 -126887932 - LTR41B LTR ERVL -585 173 21 1 757 309 117 0 0 chr6 22630233 22630293 -126886744 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 757 705 217 129 12 chr6 22630304 22630467 -126886570 - B3A SINE B2 -16 182 1 1 757 606 116 0 0 chr6 22630663 22630758 -126886279 - L1_Mur2 LINE L1 -684 5193 5099 1 757 6490 101 51 9 chr6 22630764 22631831 -126885206 + L1_Mus4 LINE L1 5523 6634 -2 2 757 2927 82 79 37 chr6 22631890 22632346 -126884691 - IAPLTR2_Mm LTR ERVK 0 475 1 2 757 13362 59 11 3 chr6 22632348 22634106 -126882931 - IAPEz-int LTR ERVK -2 6479 4708 2 757 1597 95 49 4 chr6 22634133 22634376 -126882661 - IAPEz-int LTR ERVK -5183 2497 2244 2 757 853 92 0 0 chr6 22634371 22634490 -126882547 - IAPEz-int LTR ERVK -5004 1477 1359 2 757 3430 62 1 16 chr6 22634490 22635068 -126881969 - IAPEz-int LTR ERVK -5819 662 168 2 757 226 327 0 0 chr6 22635068 22635123 -126881914 - RLTR27 LTR ERVK -34 275 221 2 757 869 119 99 18 chr6 22635123 22635294 -126881743 - IAPEz-int LTR ERVK -6288 193 9 2 757 2919 81 102 2 chr6 22635295 22635727 -126881310 - IAPLTR2_Mm LTR ERVK 0 475 1 2 757 1339 227 59 12 chr6 22636340 22636746 -126880291 - Lx9 LINE L1 -1 7643 7219 2 757 21 0 0 0 chr6 22636880 22636901 -126880136 + AT_rich Low_complexity Low_complexity 1 21 0 2 757 551 285 0 0 chr6 22637159 22637282 -126879755 - ID_B1 SINE B4 -11 213 91 2 757 276 372 12 55 chr6 22637668 22637833 -126879204 + MIR SINE MIR 42 199 -63 2 757 215 202 12 25 chr6 22638049 22638130 -126878907 + A-rich Low_complexity Low_complexity 5 84 0 2 757 22 35 0 0 chr6 22638134 22638163 -126878874 + AT_rich Low_complexity Low_complexity 1 29 0 2 757 297 81 48 0 chr6 22638244 22638306 -126878731 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 757 319 267 51 17 chr6 22638975 22639093 -126877944 + 7SK RNA RNA 1 122 -209 2 757 204 200 0 0 chr6 22639623 22639673 -126877364 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 757 818 336 30 0 chr6 22639678 22639949 -126877088 - B4A SINE B4 -9 283 5 2 757 205 346 100 6 chr6 22640095 22640255 -126876782 - L2 LINE L2 -875 2544 2370 2 757 187 253 237 13 chr6 22641485 22641561 -126875476 + MIR SINE MIR 50 142 -120 2 757 319 260 81 8 chr6 22642327 22642451 -126874586 + L1MA8 LINE L1 5996 6128 -163 2 757 23 0 0 0 chr6 22643503 22643526 -126873511 + AT_rich Low_complexity Low_complexity 1 23 0 2 757 4750 55 2 10 chr6 22643612 22644223 -126872814 + L1Md_F2 LINE L1 5976 6581 -1 2 757 24 32 0 0 chr6 22645764 22645795 -126871242 + AT_rich Low_complexity Low_complexity 1 31 0 2 757 603 218 0 72 chr6 22645842 22645995 -126871042 - Lx8 LINE L1 -939 6534 6393 2 757 612 215 11 11 chr6 22645997 22646176 -126870861 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 757 494 263 117 35 chr6 22646211 22646408 -126870629 + B3 SINE B2 4 216 0 2 757 275 299 19 9 chr6 22646451 22646559 -126870478 + Lx9 LINE L1 6433 6541 -1103 2 757 414 227 34 11 chr6 22646647 22646736 -126870301 + B1_Mur1 SINE Alu 40 130 -19 2 757 414 0 0 0 chr6 22646754 22646800 -126870237 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 757 1320 232 52 13 chr6 22646800 22647110 -126869927 - ORR1C2 LTR MaLR -62 322 1 2 757 1589 287 92 11 chr6 22647111 22647742 -126869295 + Lx8 LINE L1 6789 7470 -3 2 757 184 227 23 0 chr6 22648977 22649021 -126868016 + L2b LINE L2 3328 3372 -3 2 757 333 0 0 0 chr6 22649461 22649498 -126867539 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 757 573 236 206 7 chr6 22649502 22649643 -126867394 - B3 SINE B2 -47 169 1 2 757 21 36 0 0 chr6 22650175 22650203 -126866834 + AT_rich Low_complexity Low_complexity 1 28 0 2 757 420 141 0 0 chr6 22651281 22651352 -126865685 - L1Md_F2 LINE L1 -12 6570 6500 2 757 352 356 75 52 chr6 22652458 22652820 -126864217 + MamRep605 Unknown Unknown 238 607 -269 2 757 507 250 75 21 chr6 22653085 22653232 -126863805 + L1MA4 LINE L1 5730 5889 -411 2 757 225 0 0 0 chr6 22653232 22653257 -126863780 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 757 507 261 71 26 chr6 22653257 22653321 -126863716 + L1MA4 LINE L1 5890 5947 -350 2 757 425 177 0 34 chr6 22654655 22654772 -126862265 + (CATATA)n Simple_repeat Simple_repeat 1 113 0 2 757 257 299 52 0 chr6 22655804 22655881 -126861156 + ORR1E LTR MaLR 2 82 -277 2 757 317 293 100 97 chr6 22655965 22656286 -126860751 - MLT1B LTR MaLR -2 388 67 2 757 189 0 0 0 chr6 22656383 22656404 -126860633 + (T)n Simple_repeat Simple_repeat 1 21 0 2 757 618 335 0 40 chr6 22656924 22657101 -126859936 - B3A SINE B2 -27 171 2 2 757 725 307 14 5 chr6 22657119 22657335 -126859702 - ID_B1 SINE B4 -5 219 2 2 757 649 302 25 135 chr6 22657929 22658018 -126859019 + B4 SINE B4 2 77 -215 2 757 751 181 7 35 chr6 22658018 22658161 -126858876 + B1_Mur3 SINE Alu 2 140 -9 2 757 649 302 25 135 chr6 22658161 22658316 -126858721 + B4 SINE B4 78 219 -73 2 757 936 172 0 0 chr6 22658326 22658500 -126858537 + GA-rich Low_complexity Low_complexity 3 176 0 2 757 418 230 22 7 chr6 22658545 22658681 -126858356 + (CATATA)n Simple_repeat Simple_repeat 6 143 0 2 757 227 294 14 42 chr6 22659328 22659399 -126857638 + RCHARR1 DNA MER1_type 244 312 -662 2 757 1478 106 3 109 chr6 22659403 22659688 -126857349 - L1_Mus2 LINE L1 0 6566 6312 2 757 26194 26 2 0 chr6 22659688 22663614 -126853423 - L1Md_T LINE L1 -9 6573 2641 2 757 1784 73 45 0 chr6 22663597 22663843 -126853194 - L1_Mus2 LINE L1 -230 6336 6080 2 757 3782 50 6 0 chr6 22663839 22664336 -126852701 + L1_Mus2 LINE L1 5612 6111 -455 2 757 302 334 158 74 chr6 22664360 22664683 -126852354 - LTR82B Low_complexity ERVL -14 816 467 2 757 235 208 74 19 chr6 22665153 22665207 -126851830 - MIRc SINE MIR -87 181 125 2 757 33 0 0 0 chr6 22665705 22665738 -126851299 + AT_rich Low_complexity Low_complexity 1 33 0 2 757 398 212 12 12 chr6 22667316 22667397 -126849640 - ID4_ SINE ID -1 82 2 2 757 1351 260 33 15 chr6 22667921 22668316 -126848721 + Lx6 LINE L1 6992 7393 -67 2 757 262 197 0 90 chr6 22668320 22668398 -126848639 + GA-rich Low_complexity Low_complexity 4 74 0 2 757 201 118 0 56 chr6 22668430 22668466 -126848571 + A-rich Low_complexity Low_complexity 2 35 0 2 757 348 330 42 152 chr6 22668468 22668732 -126848305 + B4A SINE B4 1 235 -57 2 757 387 157 0 0 chr6 22668805 22668875 -126848162 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 757 650 143 82 12 chr6 22669217 22669387 -126847650 - Lx7 LINE L1 -149 7547 7366 2 757 245 146 21 0 chr6 22669387 22669435 -126847602 + (TATG)n Simple_repeat Simple_repeat 4 52 0 2 757 243 224 17 0 chr6 22669487 22669545 -126847492 + A-rich Low_complexity Low_complexity 2 60 0 2 757 1091 233 84 14 chr6 22669561 22669905 -126847132 - Lx7 LINE L1 -354 7342 6975 2 757 1106 149 28 9 chr6 22669918 22670134 -126846903 - Lx2 LINE L1 0 6997 6778 2 757 3536 94 4 2 chr6 22670137 22670647 -126846390 - Lx2 LINE L1 -371 6626 6116 2 757 1136 133 20 0 chr6 22670646 22670841 -126846196 - L1_Mur3 LINE L1 -3608 2272 2074 2 757 429 20 0 0 chr6 22670841 22670891 -126846146 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 757 3039 54 10 8 chr6 22670891 22671283 -126845754 - MTA_Mm LTR MaLR -3 393 1 2 757 4394 96 19 103 chr6 22671284 22672071 -126844966 - MTA_Mm-int LTR MaLR -1 1097 377 2 757 8211 15 7 0 chr6 22672074 22673229 -126843808 - L1Md_A LINE L1 0 6582 5416 2 757 10640 6 0 0 chr6 22673227 22674486 -126842551 + L1Md_A LINE L1 4140 5398 -485 2 757 2864 83 7 21 chr6 22674486 22674915 -126842122 - MTA_Mm-int LTR MaLR -675 423 1 2 757 2919 72 13 5 chr6 22674916 22675309 -126841728 - MTA_Mm LTR MaLR 0 396 1 2 94 2462 173 15 9 chr6 22675310 22675840 -126841197 - L1_Mur3 LINE L1 -3819 2061 1529 2 758 4229 194 109 20 chr6 22675840 22677063 -126839974 - L1_Mur3 LINE L1 -4505 1375 34 2 758 205 291 0 122 chr6 22677897 22677987 -126839050 + L2 LINE L2 2303 2381 -1038 2 758 927 281 66 20 chr6 22678309 22678763 -126838274 + L1MB5 LINE L1 4927 5401 -745 2 758 650 301 53 11 chr6 22678850 22679135 -126837902 + L1MB5 LINE L1 5422 5718 -462 2 758 907 254 81 14 chr6 22679155 22679503 -126837534 + L1MB5 LINE L1 5803 6173 -1 2 758 22 0 0 0 chr6 22679554 22679576 -126837461 + AT_rich Low_complexity Low_complexity 1 22 0 2 758 26 30 0 0 chr6 22679675 22679708 -126837329 + AT_rich Low_complexity Low_complexity 1 33 0 2 758 400 257 0 62 chr6 22679966 22680082 -126836955 - B1F SINE Alu -34 115 8 2 758 1691 207 62 8 chr6 22680080 22680436 -126836601 + ORR1C2 LTR MaLR 6 380 -4 2 758 195 160 0 115 chr6 22680813 22680876 -126836161 - MIRc SINE MIR -62 206 156 2 758 3195 93 33 2 chr6 22681742 22682491 -126834546 - Lx LINE L1 -936 6072 5352 2 758 1090 163 74 0 chr6 22682490 22682693 -126834344 + Lx2 LINE L1 6675 6892 -105 2 758 4153 72 36 22 chr6 22682693 22683701 -126833336 - L1VL2 LINE L1 -2267 1348 322 2 758 198 326 101 34 chr6 22686830 22686919 -126830118 + L2c LINE L2 3279 3373 -14 2 758 434 244 59 0 chr6 22687181 22687300 -126829737 + Lx7 LINE L1 7187 7312 -384 2 758 180 0 0 0 chr6 22687301 22687321 -126829716 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2 758 594 181 228 0 chr6 22687324 22687539 -126829498 - Lx9 LINE L1 -1 7643 7380 2 758 25 0 0 0 chr6 22688373 22688398 -126828639 + AT_rich Low_complexity Low_complexity 1 25 0 2 758 10575 47 0 0 chr6 22688758 22690121 -126826916 + L1Md_F2 LINE L1 4224 5586 -297 2 758 8132 42 1 9 chr6 22690121 22691125 -126825912 + L1Md_F2 LINE L1 5587 6582 0 2 758 313 203 62 0 chr6 22692060 22692124 -126824913 - ID4_ SINE ID -14 69 2 2 758 2220 162 66 90 chr6 22692342 22692396 -126824641 - RLTR24 LTR ERV1 0 529 477 2 758 186 43 0 0 chr6 22692396 22692419 -126824618 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2 758 2220 162 66 90 chr6 22692419 22692906 -126824131 - RLTR24 LTR ERV1 -53 476 3 2 758 412 269 98 40 chr6 22693112 22693286 -126823751 - RLTR42 LTR ERVK -1 238 55 2 758 3891 159 7 10 chr6 22693441 22694148 -126822889 + Lx LINE L1 5947 6651 -3 2 758 292 304 59 101 chr6 22695018 22695206 -126821831 - MIRb SINE MIR -86 182 4 2 758 184 59 59 0 chr6 22695494 22695528 -126821509 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 2 758 458 328 11 139 chr6 22696214 22696391 -126820646 - MT2A LTR ERVL -295 238 1 2 758 472 240 10 0 chr6 22696391 22696487 -126820550 - MTE2b LTR MaLR -282 97 1 2 758 318 233 7 122 chr6 22696604 22696751 -126820286 + Lx9 LINE L1 6972 7101 -543 2 758 501 277 39 0 chr6 22696726 22696881 -126820156 - Lx9 LINE L1 -213 7431 7271 2 758 4786 219 63 7 chr6 22696892 22698488 -126818549 - Lx7 LINE L1 -891 6805 5130 2 758 4125 77 58 40 chr6 22699113 22699733 -126817304 - L1_Mus2 LINE L1 -9 6557 5927 2 758 2662 108 2 20 chr6 22699734 22700177 -126816860 - MusHAL1 LINE L1 -1304 1408 974 2 758 765 165 307 9 chr6 22700184 22700412 -126816625 + RLTR13D1 LTR ERVK 1 296 -597 2 758 11101 71 2 8 chr6 22700418 22702872 -126814165 - L1Md_Gf LINE L1 -3124 2762 226 2 758 2752 157 69 52 chr6 22702875 22703547 -126813490 + RLTR13D1 LTR ERVK 252 855 0 2 758 6316 122 10 36 chr6 22703547 22705101 -126811936 - L1Md_F LINE L1 -3708 2175 675 2 758 718 227 39 39 chr6 22705473 22705652 -126811385 + MTEa LTR MaLR 1 179 -200 2 758 610 136 16 16 chr6 22705652 22705779 -126811258 + GA-rich Low_complexity Low_complexity 2 128 0 3 758 416 104 15 0 chr6 22705785 22705852 -126811185 + (GGA)n Simple_repeat Simple_repeat 2 69 0 3 758 776 233 34 11 chr6 22705867 22706045 -126810992 + MTEa LTR MaLR 187 368 -11 2 758 297 0 0 0 chr6 22706176 22706209 -126810828 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3 758 205 143 41 0 chr6 22707135 22707184 -126809853 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 3 758 580 229 82 29 chr6 22707621 22707792 -126809245 - B3A SINE B2 -18 180 1 3 758 5669 103 24 17 chr6 22708558 22709403 -126807634 - Lx3C LINE L1 -7 6969 6119 3 758 24 0 0 0 chr6 22712430 22712454 -126804583 + AT_rich Low_complexity Low_complexity 1 24 0 3 758 321 267 153 25 chr6 22712870 22713066 -126803971 + Lx9 LINE L1 7404 7624 -20 3 758 360 0 0 0 chr6 22713282 22713322 -126803715 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 758 457 328 63 78 chr6 22713445 22713700 -126803337 + B4 SINE B4 28 278 -14 3 758 3485 30 0 0 chr6 22713728 22714124 -126802913 - MTA_Mm LTR MaLR 0 396 1 3 758 184 170 0 36 chr6 22714132 22714187 -126802850 + (CATA)n Simple_repeat Simple_repeat 2 54 0 3 758 346 348 82 22 chr6 22714597 22714732 -126802305 - Arthur1C DNA Tip100 -219 144 2 3 758 225 0 0 0 chr6 22714845 22714870 -126802167 + (CTG)n Simple_repeat Simple_repeat 1 25 0 3 758 837 56 0 0 chr6 22714870 22714977 -126802060 + (TTC)n Simple_repeat Simple_repeat 3 109 0 3 758 204 125 0 0 chr6 22715015 22715047 -126801990 + (TTA)n Simple_repeat Simple_repeat 2 33 0 3 758 211 333 0 0 chr6 22715397 22715448 -126801589 + B4A SINE B4 1 51 -241 3 758 1714 28 5 27 chr6 22715458 22715678 -126801359 - L1_Mus1 LINE L1 0 6567 6353 3 758 628 279 58 35 chr6 22715702 22715873 -126801164 + B4 SINE B4 34 208 -84 3 758 932 134 6 0 chr6 22715895 22716052 -126800985 + (GGAA)n Simple_repeat Simple_repeat 3 160 0 3 758 292 250 88 0 chr6 22716068 22716136 -126800901 + B4 SINE B4 215 288 -4 3 758 1350 66 0 0 chr6 22716142 22716477 -126800560 + (CA)n Simple_repeat Simple_repeat 1 335 0 3 758 296 48 0 23 chr6 22716591 22716634 -126800403 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 3 758 1075 83 7 7 chr6 22716640 22716786 -126800251 - B1_Mm SINE Alu -1 146 1 3 758 201 287 0 22 chr6 22717630 22717719 -126799318 + (CTATT)n Simple_repeat Simple_repeat 1 87 0 3 758 253 276 72 0 chr6 22717739 22717919 -126799118 + L1M5 LINE L1 5375 5570 -594 3 758 408 40 0 0 chr6 22718100 22718150 -126798887 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 758 183 205 0 0 chr6 22718162 22718201 -126798836 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 758 236 233 79 40 chr6 22718523 22718599 -126798438 - MER110A LTR ERV1 -170 298 220 3 758 7149 74 4 5 chr6 22718643 22719919 -126797118 - L1_Mus1 LINE L1 0 6567 5288 3 758 6844 60 5 16 chr6 22719912 22719931 -126797106 - L1Md_F2 LINE L1 -26 6556 6543 3 758 321 82 0 0 chr6 22719931 22719980 -126797057 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 3 758 6844 60 5 16 chr6 22719980 22720906 -126796131 - L1Md_F2 LINE L1 -40 6542 5621 3 758 1232 312 118 17 chr6 22721104 22721746 -126795291 + Lx8 LINE L1 6215 6921 -552 3 758 1921 134 22 30 chr6 22721743 22722104 -126794933 - Lx3B LINE L1 -699 6274 5917 3 758 2495 185 64 12 chr6 22722102 22722605 -126794432 + Lx3B LINE L1 6426 6954 -19 3 758 228 242 0 46 chr6 22722786 22722851 -126794186 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 3 758 384 316 70 35 chr6 22722881 22723222 -126793815 - MER110-int LTR ERV1 -159 4488 4136 3 758 378 322 65 33 chr6 22723379 22723655 -126793382 - MER110-int LTR ERV1 -849 3798 3514 3 758 13615 70 0 1 chr6 22723671 22725556 -126791481 - L1_Mm LINE L1 -1355 4528 2645 3 758 370 305 19 70 chr6 22725533 22725708 -126791329 - Lx7 LINE L1 -738 6958 6791 3 758 4308 139 32 3 chr6 22725708 22726415 -126790622 - Lx2A1 LINE L1 -10 6998 6271 3 758 370 305 19 70 chr6 22726415 22726454 -126790583 - Lx7 LINE L1 -906 6790 6755 3 758 3689 151 44 21 chr6 22726493 22727484 -126789553 - Lx LINE L1 -2 6564 5536 3 758 4757 156 1 2 chr6 22727508 22728371 -126788666 + L1_Mur2 LINE L1 4065 4926 -951 3 758 7386 59 8 5 chr6 22728371 22729816 -126787221 - L1Md_F2 LINE L1 -5 6577 5123 3 758 31820 71 24 4 chr6 22729813 22735853 -126781184 - L1Md_F2 LINE L1 -2 6583 312 3 758 9010 61 2 5 chr6 22735845 22737072 -126779965 - L1_Mm LINE L1 -742 5141 3919 3 758 3162 160 8 2 chr6 22737067 22737654 -126779383 + L1_Mm LINE L1 4937 5527 -356 3 758 530 250 40 40 chr6 22737655 22737805 -126779232 - B1_Mur4 SINE Alu 0 150 1 3 758 1058 275 29 19 chr6 22737805 22738108 -126778929 - Lx7 LINE L1 -924 6772 6467 3 758 266 50 0 24 chr6 22738744 22738785 -126778252 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 758 786 196 8 0 chr6 22738785 22738918 -126778119 - B1_Mus1 SINE Alu -13 135 2 3 758 344 279 36 0 chr6 22738918 22739058 -126777979 - L1MD LINE L1 -1912 4234 4090 3 758 29 0 0 0 chr6 22739474 22739503 -126777534 + AT_rich Low_complexity Low_complexity 1 29 0 3 758 507 260 47 8 chr6 22740003 22740131 -126776906 - ETnERV2-int LTR ERVK -204 7202 7070 3 758 306 276 94 9 chr6 22740685 22740791 -126776246 - MER110A LTR ERV1 -297 171 57 3 758 225 0 0 0 chr6 22741391 22741416 -126775621 + (T)n Simple_repeat Simple_repeat 1 25 0 3 758 997 136 129 15 chr6 22743704 22743906 -126773131 - URR1B DNA MER1_type 0 225 1 3 758 393 184 0 0 chr6 22745939 22746048 -126770989 + (CA)n Simple_repeat Simple_repeat 2 110 0 3 758 708 182 0 0 chr6 22746092 22746337 -126770700 + (CA)n Simple_repeat Simple_repeat 1 245 0 3 758 758 208 7 0 chr6 22747059 22747203 -126769834 - B1_Mur1 SINE Alu -2 147 3 3 758 189 0 0 0 chr6 22747492 22747513 -126769524 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 758 711 335 45 45 chr6 22748076 22748342 -126768695 - B4 SINE B4 -25 267 2 3 758 357 275 167 14 chr6 22749248 22749392 -126767645 - B3A SINE B2 -16 182 17 3 758 397 345 30 25 chr6 22749562 22749764 -126767273 + Tigger13a DNA MER2_type 456 658 -113 3 758 7093 80 14 1 chr6 22749892 22751311 -126765726 - L1_Mus1 LINE L1 0 6654 5145 3 758 243 350 70 47 chr6 22751411 22751582 -126765455 - MIRc SINE MIR -27 241 67 3 758 186 286 48 0 chr6 22752066 22752129 -126764908 - MIRc SINE MIR -21 247 182 3 758 963 82 0 0 chr6 22753159 22753293 -126763744 + (TCTCCC)n Simple_repeat Simple_repeat 3 136 0 3 758 580 294 54 7 chr6 22754086 22754380 -126762657 - L1MA8 LINE L1 -47 7204 6897 3 758 186 152 87 0 chr6 22754975 22755021 -126762016 - L3 LINE CR1 -2276 2213 2164 3 758 198 0 0 0 chr6 22755085 22755107 -126761930 + (A)n Simple_repeat Simple_repeat 1 22 0 3 758 4739 34 0 9 chr6 22755338 22755909 -126761128 - L1Md_F3 LINE L1 0 6584 6019 3 758 2924 6 9 0 chr6 22755909 22756259 -126760778 + L1Md_F3 LINE L1 5704 6056 -528 3 758 524 236 159 2 chr6 22756417 22756728 -126760309 - L1MA8 LINE L1 -708 6564 6195 3 758 341 220 0 81 chr6 22756866 22756965 -126760072 + Lx7 LINE L1 7251 7341 -355 3 758 234 154 0 37 chr6 22756981 22757035 -126760002 + T-rich Low_complexity Low_complexity 3 54 0 3 758 1263 189 73 13 chr6 22757046 22757347 -126759690 + Lx7 LINE L1 7357 7675 -21 3 758 1170 80 20 8 chr6 22757349 22757603 -126759434 + (GAAA)n Simple_repeat Simple_repeat 1 257 0 3 758 272 304 136 31 chr6 22757648 22758008 -126759029 - L1MA8 LINE L1 -965 6135 5738 3 758 23 33 0 0 chr6 22758011 22758041 -126758996 + AT_rich Low_complexity Low_complexity 1 30 0 3 758 225 0 0 0 chr6 22758056 22758081 -126758956 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 758 2089 169 60 5 chr6 22758081 22758449 -126758588 - ORR1B1 LTR MaLR -3 391 4 3 758 559 337 54 20 chr6 22758449 22758570 -126758467 - B4A SINE B4 -81 211 87 3 758 225 0 0 0 chr6 22758570 22758595 -126758442 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 758 559 337 54 20 chr6 22758595 22758676 -126758361 - B4A SINE B4 -206 86 3 3 758 383 242 151 43 chr6 22758688 22759012 -126758025 - L1MA8 LINE L1 -1595 5505 5147 3 758 3634 191 60 5 chr6 22759023 22759861 -126757176 + Lx5 LINE L1 6117 7000 -50 3 758 437 294 50 75 chr6 22759893 22760254 -126756783 - L1MA8 LINE L1 -1944 5156 4801 3 758 415 292 38 19 chr6 22760299 22760456 -126756581 - L1MA8 LINE L1 -2450 4650 4491 3 758 257 237 0 63 chr6 22760551 22760614 -126756423 + RMER15-int LTR ERVL 4936 4994 -5 3 758 622 319 52 26 chr6 22760741 22760973 -126756064 + RMER15 LTR ERVL 338 575 0 3 758 348 24 0 0 chr6 22761076 22761117 -126755920 + (TGG)n Simple_repeat Simple_repeat 1 41 0 3 758 865 268 91 47 chr6 22761117 22761391 -126755646 - B4A SINE B4 0 292 7 3 758 465 324 78 9 chr6 22761629 22761847 -126755190 - L1MA8 LINE L1 -6774 256 24 3 758 5844 222 37 16 chr6 22762250 22763671 -126753366 + Lx7 LINE L1 5925 7374 -322 3 758 567 203 50 59 chr6 22763673 22763893 -126753144 + Lx7 LINE L1 7479 7696 0 3 758 21 36 0 0 chr6 22764943 22764971 -126752066 + AT_rich Low_complexity Low_complexity 1 28 0 3 758 333 0 0 0 chr6 22765716 22765753 -126751284 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 758 565 336 90 31 chr6 22765770 22766025 -126751012 - B4A SINE B4 -22 270 1 3 758 1577 73 0 0 chr6 22766265 22766469 -126750568 + L1_Mus1 LINE L1 6362 6565 -2 3 758 26 0 0 0 chr6 22766469 22766495 -126750542 + AT_rich Low_complexity Low_complexity 1 26 0 3 758 327 333 117 18 chr6 22767095 22767489 -126749548 + L1MEc LINE L1 445 877 -5523 3 758 528 200 26 0 chr6 22767494 22767609 -126749428 + Lx9 LINE L1 7346 7463 -181 3 758 4570 147 50 14 chr6 22767621 22768677 -126748360 + L1Md_F LINE L1 238 1301 -5423 3 758 2625 194 130 73 chr6 22768676 22768883 -126748154 - L1_Mur3 LINE L1 -176 5704 5508 3 758 5650 56 1 3 chr6 22768883 22769598 -126747439 - L1Md_F2 LINE L1 -2 6580 5867 3 758 2625 194 130 73 chr6 22769598 22770241 -126746796 - L1_Mur3 LINE L1 -373 5507 4805 3 758 643 168 42 7 chr6 22770398 22770542 -126746495 + Lx9 LINE L1 7489 7637 -7 3 758 250 256 109 33 chr6 22770732 22770942 -126746095 + L1MEc LINE L1 1111 1336 -5064 3 758 207 0 0 0 chr6 22771044 22771067 -126745970 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 3 758 558 330 40 30 chr6 22771301 22771826 -126745211 + L1MEc LINE L1 2956 3485 -2834 3 758 340 287 170 14 chr6 22771940 22772223 -126744814 + L1MEc LINE L1 3675 4001 -2318 3 758 313 344 116 24 chr6 22772329 22772579 -126744458 - B4A SINE B4 -18 274 2 3 758 1887 262 102 56 chr6 22773083 22773095 -126743942 + Lx8 LINE L1 6427 6438 -1035 3 758 2371 134 37 37 chr6 22773095 22773528 -126743509 - Lx LINE L1 0 6654 6222 3 758 1887 262 102 56 chr6 22773528 22774270 -126742767 + Lx8 LINE L1 6439 7216 -257 3 758 250 361 0 0 chr6 22774284 22774381 -126742656 + RMER15 LTR ERVL 371 467 -108 3 758 244 320 126 53 chr6 22774701 22774948 -126742089 - LTR33 LTR ERVL 0 515 251 3 758 703 300 82 8 chr6 22775334 22775589 -126741448 + MER58B DNA MER1_type 1 274 -67 3 758 375 189 21 0 chr6 22775696 22775791 -126741246 + (CACCAT)n Simple_repeat Simple_repeat 2 98 0 3 758 1894 115 84 0 chr6 22775832 22776018 -126741019 + Lx3A LINE L1 6668 6853 -128 3 758 182 37 0 36 chr6 22776018 22776046 -126740991 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 4 758 1894 115 84 0 chr6 22776046 22776146 -126740891 + Lx3A LINE L1 6854 6976 -5 3 758 24 0 0 0 chr6 22776149 22776173 -126740864 + AT_rich Low_complexity Low_complexity 1 24 0 4 758 414 0 0 0 chr6 22776364 22776410 -126740627 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 758 237 197 0 62 chr6 22777114 22777179 -126739858 + GA-rich Low_complexity Low_complexity 3 63 0 4 758 357 281 17 0 chr6 22777441 22777553 -126739484 - PB1D7 SINE Alu 0 120 2 4 758 822 306 46 89 chr6 22778288 22778682 -126738355 + MTEb LTR MaLR 1 377 -2 4 758 721 271 138 53 chr6 22779338 22779845 -126737192 + L1MA9 LINE L1 5386 5935 -377 4 758 1349 219 17 0 chr6 22780479 22780776 -126736261 - Lx9 LINE L1 -391 7253 6952 4 758 293 272 22 0 chr6 22780768 22780860 -126736177 + Lx9 LINE L1 7541 7634 -10 4 758 1663 31 0 0 chr6 22780877 22781069 -126735968 + B2_Mm1t SINE B2 1 192 -1 4 758 3832 131 17 90 chr6 22781296 22782051 -126734986 - RMER6A LTR ERVK 0 756 57 4 758 4963 218 53 9 chr6 22782104 22783338 -126733699 + Lx9 LINE L1 6322 7609 -35 4 758 304 232 17 51 chr6 22785047 22785165 -126731872 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 4 758 527 182 34 0 chr6 22786651 22786739 -126730298 + B1_Mm SINE Alu 1 91 -56 4 758 378 223 59 69 chr6 22786653 22786754 -126730283 + MT2B LTR ERVL 167 266 -335 4 758 202 363 129 0 chr6 22786871 22786995 -126730042 - MIRb SINE MIR -92 176 37 4 758 234 0 0 0 chr6 22788348 22788374 -126728663 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 758 267 236 184 39 chr6 22789349 22789443 -126727594 - B3A SINE B2 -93 102 1 4 758 906 228 91 0 chr6 22789987 22790184 -126726853 + MTC LTR MaLR 1 215 -206 4 758 480 35 0 0 chr6 22790186 22790244 -126726793 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 758 1158 122 0 0 chr6 22790248 22790428 -126726609 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 758 252 86 0 0 chr6 22790428 22790463 -126726574 + (GGA)n Simple_repeat Simple_repeat 2 36 0 4 758 185 94 31 0 chr6 22790459 22790491 -126726546 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 4 758 1078 184 29 15 chr6 22790493 22790697 -126726340 + MTC LTR MaLR 197 403 -18 4 758 472 282 75 23 chr6 22791286 22791460 -126725577 - MER3 DNA MER1_type -26 183 1 4 758 279 0 0 0 chr6 22792358 22792389 -126724648 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 758 474 18 0 0 chr6 22792389 22792443 -126724594 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 758 818 271 175 25 chr6 22792482 22793083 -126723954 - L1M2 LINE L1 -930 5213 4523 4 758 24 32 0 0 chr6 22793210 22793241 -126723796 + AT_rich Low_complexity Low_complexity 1 31 0 4 758 196 77 0 49 chr6 22793863 22793904 -126723133 + (TAA)n Simple_repeat Simple_repeat 2 40 0 4 758 380 276 69 69 chr6 22794318 22794493 -126722544 + MLT1F1 LTR MaLR 395 569 0 4 758 1812 205 14 20 chr6 22795287 22795641 -126721396 - ORR1B2 LTR MaLR -15 352 1 4 758 1366 292 65 33 chr6 22795765 22796275 -126720762 - Lx5 LINE L1 -18 7032 6507 4 758 3192 192 45 26 chr6 22796299 22797026 -126720011 - L1_Mur2 LINE L1 -2 5875 5135 4 758 508 159 75 0 chr6 22797021 22797128 -126719909 + L1_Mur2 LINE L1 5025 5139 -738 4 758 1632 265 91 40 chr6 22797504 22798173 -126718864 + Lx9 LINE L1 6771 7473 -171 4 758 1419 133 4 8 chr6 22798346 22798581 -126718456 - Lx LINE L1 -2 6652 6419 4 758 3398 35 2 0 chr6 22798581 22798976 -126718061 - MTA_Mm LTR MaLR 0 396 1 4 758 360 0 0 0 chr6 22799154 22799194 -126717843 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 4 758 252 0 0 0 chr6 22799675 22799703 -126717334 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 758 773 323 85 11 chr6 22800407 22800667 -126716370 - B4A SINE B4 -10 282 4 4 758 249 178 0 0 chr6 22801072 22801117 -126715920 + Lx7 LINE L1 6612 6656 -1040 4 758 995 293 54 3 chr6 22801138 22801511 -126715526 + Lx8 LINE L1 6737 7128 -345 4 758 551 293 15 0 chr6 22801876 22802009 -126715028 - RSINE1 SINE B4 -29 136 2 4 758 3713 53 0 16 chr6 22802062 22802201 -126714836 - L1Md_F2 LINE L1 -638 5944 5811 4 758 3528 10 5 0 chr6 22802201 22802595 -126714442 + MTA_Mm LTR MaLR 1 396 0 4 758 3713 75 0 12 chr6 22802595 22803029 -126714008 - L1Md_F2 LINE L1 -73 5810 5377 4 758 1982 68 30 4 chr6 22803029 22803296 -126713741 + L1_Mus1 LINE L1 6292 6565 -2 4 758 180 0 0 0 chr6 22803296 22803316 -126713721 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 758 375 348 90 50 chr6 22803490 22803811 -126713226 + HAL1 LINE L1 11 344 -2163 4 758 777 296 88 39 chr6 22804375 22804794 -126712243 + L1MB1 LINE L1 5333 5782 -407 4 758 325 250 12 12 chr6 22804794 22804875 -126712162 + ID4_ SINE ID 3 83 0 4 758 777 296 88 39 chr6 22804875 22805077 -126711960 + L1MB1 LINE L1 5783 5985 -204 4 758 426 306 143 52 chr6 22805446 22805718 -126711319 + HAL1 LINE L1 1015 1311 -1196 4 758 306 301 307 56 chr6 22806045 22806331 -126710706 - MLT1D LTR MaLR -130 375 18 4 759 511 119 0 0 chr6 22806578 22806662 -126710375 + RLTR22_Mus LTR ERVK 508 591 -1217 4 759 339 223 176 32 chr6 22806667 22806792 -126710245 + RLTR22_Mus LTR ERVK 1662 1804 -4 4 759 1170 134 9 14 chr6 22806805 22807017 -126710020 - L1_Mm LINE L1 -1943 3937 3727 4 759 2600 31 0 6 chr6 22807017 22807338 -126709699 - L1Md_F3 LINE L1 -2 6582 6264 4 759 11799 102 0 19 chr6 22807338 22808314 -126708723 - L1_Mm LINE L1 -640 5243 4279 4 759 5558 65 6 6 chr6 22808314 22809032 -126708005 - L1_Mus1 LINE L1 -1 6566 5849 4 759 11799 102 0 19 chr6 22809032 22809886 -126707151 - L1_Mm LINE L1 -1605 4278 3443 4 759 1992 194 20 150 chr6 22809899 22810337 -126706700 - Lx5 LINE L1 -890 6160 5731 4 759 1516 57 0 0 chr6 22810337 22810530 -126706507 - L1_Mus1 LINE L1 -1 6566 6374 4 759 2287 152 45 25 chr6 22810530 22811010 -126706027 - Lx5 LINE L1 -137 5740 5312 4 759 531 69 0 0 chr6 22811012 22811084 -126705953 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 4 759 5407 184 35 5 chr6 22811084 22812154 -126704883 - Lx5 LINE L1 -22 7028 5927 4 759 1646 131 29 3 chr6 22812149 22812456 -126704581 + Lx5 LINE L1 5601 5915 -1135 4 759 198 310 56 0 chr6 22812532 22812603 -126704434 - L2a LINE L2 -43 3383 3309 4 759 1163 62 0 7 chr6 22813489 22813636 -126703401 + B1_Mm SINE Alu 2 147 0 4 759 1043 198 50 70 chr6 22814016 22814315 -126702722 + RLTR11B LTR ERVK 1 293 -160 4 759 1188 206 20 4 chr6 22814322 22814571 -126702466 + RLTR11B LTR ERVK 201 453 0 4 759 965 214 19 43 chr6 22814902 22815112 -126701925 - B3 SINE B2 -10 206 2 4 759 817 243 11 11 chr6 22815360 22815543 -126701494 + B3A SINE B2 1 183 -15 4 759 279 0 0 0 chr6 22815846 22815877 -126701160 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 759 2011 162 31 31 chr6 22817640 22818022 -126699015 + ORR1C2 LTR MaLR 1 382 -2 4 759 311 325 0 11 chr6 22818505 22818592 -126698445 + PB1D10 SINE Alu 1 86 -31 4 759 681 303 85 21 chr6 22819791 22820169 -126696868 + L1MC3 LINE L1 5563 5964 -1821 4 759 345 311 71 12 chr6 22820395 22820564 -126696473 + L1MC3 LINE L1 6155 6333 0 4 759 730 289 108 32 chr6 22820716 22821030 -126696007 + MLT1A0 LTR MaLR 12 349 -16 4 759 847 123 13 0 chr6 22821362 22821516 -126695521 + (TA)n Simple_repeat Simple_repeat 2 157 0 4 759 529 250 0 0 chr6 22822825 22822929 -126694108 - B1_Mur4 SINE Alu -3 147 44 4 759 306 0 0 0 chr6 22823544 22823578 -126693459 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 4 759 503 69 14 0 chr6 22825637 22825709 -126691328 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 759 282 245 39 19 chr6 22827304 22827408 -126689629 - L1MB7 LINE L1 -39 6145 6040 4 759 567 249 10 61 chr6 22827442 22827639 -126689398 - L1MB7 LINE L1 -223 5961 5775 4 759 252 86 0 0 chr6 22827857 22827892 -126689145 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 759 474 18 0 0 chr6 22827895 22827950 -126689087 + (CTA)n Simple_repeat Simple_repeat 3 57 0 4 759 393 263 30 0 chr6 22829449 22829548 -126687489 - ID_B1 SINE B4 -5 219 118 4 759 495 242 8 45 chr6 22829974 22830108 -126686929 + B1F SINE Alu 18 146 -3 4 759 1000 300 25 51 chr6 22830324 22830639 -126686398 + B4 SINE B4 7 288 -4 4 759 207 182 22 22 chr6 22831640 22831685 -126685352 - L3 LINE CR1 -2270 2219 2175 4 759 302 98 20 0 chr6 22832411 22832462 -126684575 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 759 973 308 58 15 chr6 22832934 22833260 -126683777 + MLT1A0 LTR MaLR 15 354 -11 4 759 197 361 0 24 chr6 22833290 22833375 -126683662 + MER5B DNA MER1_type 94 176 -2 4 759 678 44 0 0 chr6 22834317 22834407 -126682630 + (GA)n Simple_repeat Simple_repeat 2 91 0 4 759 565 291 29 17 chr6 22834445 22834620 -126682417 - B4A SINE B4 -8 284 108 4 759 1121 60 7 0 chr6 22835382 22835532 -126681505 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 4 759 794 29 10 0 chr6 22835532 22835634 -126681403 - B1_Mm SINE Alu -1 146 44 4 759 274 192 13 76 chr6 22835564 22835643 -126681394 - RLTR25A LTR ERVK -520 583 510 4 759 231 36 0 0 chr6 22835853 22835881 -126681156 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 4 759 316 318 88 139 chr6 22835903 22836177 -126680860 - B4 SINE B4 0 292 33 4 759 27 49 0 0 chr6 22836379 22836420 -126680617 + AT_rich Low_complexity Low_complexity 1 41 0 4 759 759 236 10 82 chr6 22836738 22836946 -126680091 - B3A SINE B2 -1 197 5 4 759 398 274 20 31 chr6 22837368 22837466 -126679571 + B1_Mur1 SINE Alu 52 148 -1 4 759 308 202 0 23 chr6 22837490 22837576 -126679461 + GA-rich Low_complexity Low_complexity 3 86 0 4 759 606 310 61 81 chr6 22841754 22842049 -126674988 + B4 SINE B4 3 291 -1 4 759 405 331 75 88 chr6 22842509 22842885 -126674152 + ORR1E LTR MaLR 4 374 0 4 759 251 336 214 30 chr6 22843331 22843598 -126673439 - MLT1J LTR MaLR -124 388 73 4 759 518 303 14 21 chr6 22844635 22844780 -126672257 - B4A SINE B4 -146 146 3 4 759 979 230 14 5 chr6 22845109 22845319 -126671718 - URR1B DNA MER1_type -6 219 8 4 759 259 307 77 11 chr6 22845818 22845999 -126671038 - L1MB1 LINE L1 -46 6122 5930 5 759 1357 92 16 0 chr6 22847560 22847744 -126669293 + B2_Mm2 SINE B2 3 189 -6 5 759 708 286 92 60 chr6 22848544 22848827 -126668210 + B4A SINE B4 1 292 0 5 759 227 328 0 0 chr6 22849509 22849576 -126667461 + CT-rich Low_complexity Low_complexity 3 69 0 5 759 296 388 0 40 chr6 22849959 22850085 -126666952 + L4 LINE RTE 1091 1211 -818 5 759 1345 310 65 48 chr6 22850909 22851614 -126665423 + Lx8 LINE L1 6727 7443 -30 5 759 405 58 0 0 chr6 22852463 22852515 -126664522 + (TCC)n Simple_repeat Simple_repeat 2 53 0 5 759 243 179 0 0 chr6 22852512 22852579 -126664458 + CT-rich Low_complexity Low_complexity 1 67 0 5 759 647 44 11 0 chr6 22852579 22852670 -126664367 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 759 836 247 124 88 chr6 22852694 22853121 -126663916 - RLTR26 LTR ERVK -144 498 32 5 759 25 114 0 0 chr6 22855677 22855800 -126661237 + AT_rich Low_complexity Low_complexity 1 123 0 5 759 495 0 0 0 chr6 22858490 22858545 -126658492 + (TAA)n Simple_repeat Simple_repeat 1 55 0 5 759 534 308 7 0 chr6 22860938 22861081 -126655956 + RSINE1 SINE B4 5 148 -17 5 759 21 0 0 0 chr6 22861104 22861125 -126655912 + AT_rich Low_complexity Low_complexity 1 21 0 5 759 273 29 0 0 chr6 22862171 22862205 -126654832 + (TTA)n Simple_repeat Simple_repeat 1 34 0 5 759 258 217 0 0 chr6 22863807 22863876 -126653161 + (CATA)n Simple_repeat Simple_repeat 3 71 0 5 759 941 297 31 17 chr6 22864624 22864912 -126652125 - B4 SINE B4 0 292 1 5 759 862 215 58 0 chr6 22864958 22865181 -126651856 - Lx6 LINE L1 -1204 6256 6021 5 759 903 198 17 7 chr6 22865202 22865430 -126651607 - Lx6 LINE L1 -643 5657 5423 5 759 468 264 109 25 chr6 22865509 22865711 -126651326 + Lx8 LINE L1 6827 7045 -428 5 759 965 226 94 0 chr6 22865708 22865942 -126651095 - Lx8 LINE L1 -792 6681 6426 5 759 229 263 0 0 chr6 22866173 22866249 -126650788 + T-rich Low_complexity Low_complexity 3 78 0 5 759 332 267 67 0 chr6 22866504 22866594 -126650443 - B3 SINE B2 -27 189 94 5 759 1004 284 125 15 chr6 22866829 22867286 -126649751 + Lx8 LINE L1 6966 7472 -1 5 759 21 0 0 0 chr6 22867437 22867458 -126649579 + AT_rich Low_complexity Low_complexity 1 21 0 5 759 1367 261 21 6 chr6 22867674 22868006 -126649031 - Lx5 LINE L1 -3 7047 6711 5 759 497 230 0 10 chr6 22868011 22868112 -126648925 + Lx5 LINE L1 6250 6349 -701 5 759 180 294 58 14 chr6 22868995 22869064 -126647973 - L3 LINE CR1 -260 4229 4158 5 759 6454 63 2 2 chr6 22870219 22871089 -126645948 + L1Md_F2 LINE L1 4717 5586 -297 5 759 7652 61 7 4 chr6 22871089 22872074 -126644963 + L1Md_F2 LINE L1 5587 6574 -8 5 759 624 240 32 0 chr6 22872253 22872378 -126644659 - RSINE1 SINE B4 -21 144 16 5 759 422 167 13 13 chr6 22872663 22872742 -126644295 - MTC LTR MaLR -342 79 1 5 759 21 0 0 0 chr6 22872770 22872791 -126644246 + AT_rich Low_complexity Low_complexity 1 21 0 5 759 904 162 14 7 chr6 22874065 22874208 -126642829 - B1_Mur4 SINE Alu -6 144 1 5 759 426 278 17 66 chr6 22874455 22874636 -126642401 - MER67D LTR ERV1 -319 195 24 5 759 447 137 0 0 chr6 22876344 22876417 -126640620 + (T)n Simple_repeat Simple_repeat 1 73 0 5 759 26 0 0 0 chr6 22876810 22876836 -126640201 + AT_rich Low_complexity Low_complexity 1 26 0 5 759 681 180 0 0 chr6 22876928 22877039 -126639998 - RLTR33 LTR ERVK -567 111 1 5 759 884 188 0 0 chr6 22877490 22877634 -126639403 + B1_Mur2 SINE Alu 1 144 -5 5 759 1117 103 11 0 chr6 22877638 22877813 -126639224 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 5 759 728 91 0 9 chr6 22877817 22877928 -126639109 + (GGA)n Simple_repeat Simple_repeat 2 111 0 5 759 22 35 0 0 chr6 22878248 22878277 -126638760 + AT_rich Low_complexity Low_complexity 1 29 0 5 759 29 45 0 43 chr6 22878767 22878836 -126638201 + AT_rich Low_complexity Low_complexity 1 66 0 5 759 404 111 10 0 chr6 22881394 22881460 -126635577 + L1Md_F2 LINE L1 5532 5616 -558 5 759 7647 63 7 7 chr6 22881460 22882455 -126634582 + L1Md_F2 LINE L1 5588 6582 0 5 759 306 341 0 0 chr6 22883428 22883563 -126633474 + L1MA8 LINE L1 6103 6237 -54 5 759 362 290 71 83 chr6 22883716 22883885 -126633152 - ORR1D1 LTR MaLR -189 185 19 5 759 801 129 0 0 chr6 22885793 22885932 -126631105 + (TA)n Simple_repeat Simple_repeat 1 139 0 5 759 970 290 152 43 chr6 22885981 22886442 -126630595 - MER67C LTR ERV1 0 711 201 5 759 252 0 0 0 chr6 22886448 22886476 -126630561 + (T)n Simple_repeat Simple_repeat 1 28 0 5 759 2168 57 0 14 chr6 22886514 22886797 -126630240 - L1_Mus1 LINE L1 -2 6565 6287 5 759 238 362 121 32 chr6 22886910 22887067 -126629970 - RMER13B LTR ERVK -120 788 618 5 759 231 343 30 10 chr6 22888512 22888612 -126628425 + MIR SINE MIR 154 255 -7 5 759 285 71 70 14 chr6 22888670 22888741 -126628296 + (TA)n Simple_repeat Simple_repeat 2 76 0 5 759 623 327 52 15 chr6 22888771 22889038 -126627999 + B4A SINE B4 4 280 -12 5 759 216 0 0 0 chr6 22889074 22889098 -126627939 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 759 801 0 0 0 chr6 22889614 22889703 -126627334 + (TTC)n Simple_repeat Simple_repeat 1 89 0 5 759 1959 210 75 43 chr6 22889851 22890343 -126626694 + Lx5 LINE L1 6540 7047 -3 5 759 391 271 27 27 chr6 22891064 22891174 -126625863 - PB1D10 SINE Alu -7 110 1 5 759 396 0 0 0 chr6 22891247 22891291 -126625746 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 759 423 0 0 0 chr6 22891388 22891435 -126625602 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 759 369 0 0 0 chr6 22892165 22892206 -126624831 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 759 512 316 17 23 chr6 22892584 22892759 -126624278 - MER5A DNA MER1_type -4 185 12 5 759 561 281 51 28 chr6 22893182 22893358 -126623679 + B3A SINE B2 4 183 -15 5 759 736 161 7 39 chr6 22893358 22893513 -126623524 + Lx LINE L1 6228 6377 -277 5 759 343 310 8 33 chr6 22893547 22893667 -126623370 - Lx8 LINE L1 -231 7242 7126 5 759 354 276 134 0 chr6 22893719 22893846 -126623191 - Lx8 LINE L1 -504 6969 6826 5 759 247 281 64 111 chr6 22893880 22894052 -126622985 + B4A SINE B4 3 166 -126 5 759 276 30 0 0 chr6 22894140 22894173 -126622864 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 759 450 0 0 0 chr6 22894173 22894222 -126622815 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 759 383 245 52 92 chr6 22894621 22894774 -126622263 - B1F SINE Alu -1 148 2 5 759 22 0 0 0 chr6 22895081 22895103 -126621934 + AT_rich Low_complexity Low_complexity 1 22 0 5 759 328 314 72 41 chr6 22896235 22896597 -126620440 + L1MC4 LINE L1 7270 7642 -400 5 759 21 0 0 0 chr6 22896818 22896839 -126620198 + AT_rich Low_complexity Low_complexity 1 21 0 5 759 300 290 92 18 chr6 22897099 22897208 -126619829 + HAL1-3A_ME LINE L1 2672 2788 -70 5 759 315 0 0 0 chr6 22897208 22897243 -126619794 + (GGGAGA)n Simple_repeat Simple_repeat 1 35 0 5 759 512 289 93 76 chr6 22897539 22897775 -126619262 + B4 SINE B4 2 241 -51 5 759 354 340 48 60 chr6 22898107 22898273 -126618764 + RSINE1 SINE B4 2 165 0 5 759 429 20 0 0 chr6 22900066 22900116 -126616921 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 759 2552 141 47 0 chr6 22900116 22900542 -126616495 - Lx2 LINE L1 -6 6991 6546 5 759 193 297 71 119 chr6 22900811 22900937 -126616100 + L2c LINE L2 3266 3385 -2 5 759 216 0 0 0 chr6 22901411 22901435 -126615602 + (T)n Simple_repeat Simple_repeat 1 24 0 5 759 732 273 71 93 chr6 22902131 22902495 -126614542 - ORR1E LTR MaLR -3 356 1 5 759 186 103 0 0 chr6 22903474 22903503 -126613534 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 5 759 540 0 0 0 chr6 22903635 22903695 -126613342 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 759 1554 156 154 7 chr6 22903724 22904132 -126612905 + RLTR17 LTR ERVK 10 477 -215 5 759 483 18 0 0 chr6 22904253 22904309 -126612728 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 759 396 0 0 0 chr6 22904909 22904953 -126612084 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 759 249 33 0 0 chr6 22905468 22905498 -126611539 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 5 759 384 22 0 0 chr6 22905826 22905871 -126611166 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 759 249 33 0 0 chr6 22906510 22906540 -126610497 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 5 759 244 283 54 70 chr6 22906575 22906704 -126610333 - L2a LINE L2 -269 3157 3031 5 759 676 182 89 22 chr6 22906833 22906968 -126610069 + B1_Mus2 SINE Alu 1 144 -3 5 759 450 331 171 22 chr6 22907041 22907310 -126609727 - MLT1E1A LTR MaLR -73 607 299 5 759 314 303 30 20 chr6 22907680 22907781 -126609256 - L2a LINE L2 -714 2705 2604 5 759 625 200 35 35 chr6 22907878 22908023 -126609014 + B1_Mur2 SINE Alu 5 149 0 5 759 1136 83 0 0 chr6 22910063 22910208 -126606829 + B1_Mus2 SINE Alu 1 145 -2 5 759 306 107 0 0 chr6 22910209 22910265 -126606772 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 5 759 22 35 0 0 chr6 22910302 22910331 -126606706 + AT_rich Low_complexity Low_complexity 1 29 0 5 759 459 0 0 0 chr6 22912585 22912636 -126604401 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 759 200 135 27 0 chr6 22913364 22913401 -126603636 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 759 591 249 14 72 chr6 22913430 22913638 -126603399 + B3A SINE B2 3 198 0 5 759 1181 168 19 9 chr6 22913650 22913860 -126603177 + B3 SINE B2 5 216 0 5 759 239 308 26 0 chr6 22913924 22914002 -126603035 + CT-rich Low_complexity Low_complexity 3 82 0 5 759 198 289 103 28 chr6 22914759 22914866 -126602171 + L3 LINE CR1 4293 4407 -82 5 759 318 280 69 101 chr6 22915948 22916107 -126600930 + MT2B LTR ERVL 122 275 -326 6 759 536 221 73 8 chr6 22916001 22916124 -126600913 + B1_Mur2 SINE Alu 18 148 -1 6 759 725 274 5 0 chr6 22918888 22919074 -126597963 - Lx9 LINE L1 -179 7465 7279 6 759 579 341 71 0 chr6 22919660 22919842 -126597195 - ID_B1 SINE B4 -8 216 22 6 759 216 319 43 0 chr6 22919780 22919849 -126597188 - ID4 SINE ID -1 82 11 6 759 465 190 68 83 chr6 22919872 22920004 -126597033 + B1_Mur2 SINE Alu 18 147 -2 6 759 408 118 0 0 chr6 22920054 22920122 -126596915 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 759 444 286 0 0 chr6 22920347 22920480 -126596557 + Lx7 LINE L1 7189 7321 -375 6 759 234 230 33 66 chr6 22920523 22920644 -126596393 + Lx7 LINE L1 7564 7680 -16 6 759 356 254 36 89 chr6 22921548 22921773 -126595264 - Lx9 LINE L1 -20 7624 7412 6 759 337 290 0 20 chr6 22921923 22922025 -126595012 - Lx9 LINE L1 -451 7193 7094 6 759 243 228 36 48 chr6 22922103 22922186 -126594851 - PB1D10 SINE Alu -8 109 28 6 759 232 295 35 9 chr6 22922249 22922362 -126594675 - L1M5 LINE L1 -2037 4109 3994 6 759 1163 74 0 0 chr6 22923958 22924106 -126592931 + B1_Mus1 SINE Alu 1 148 0 6 759 414 317 78 70 chr6 22925198 22925442 -126591595 - MIRb SINE MIR -3 265 20 6 759 5278 63 9 9 chr6 22927574 22928260 -126588777 - L1_Mus2 LINE L1 -1 6565 5880 6 759 21 36 0 0 chr6 22930068 22930096 -126586941 + AT_rich Low_complexity Low_complexity 1 28 0 6 759 515 290 16 111 chr6 22930104 22930294 -126586743 + B3A SINE B2 5 176 -22 6 759 2302 329 38 38 chr6 22930506 22931677 -126585360 + Lx7 LINE L1 6130 7300 -396 6 759 7324 89 19 3 chr6 22931948 22933636 -126583401 + L1_Mus3 LINE L1 4925 6632 -6 6 759 704 169 29 0 chr6 22934125 22934261 -126582776 - Lx2B LINE L1 -5 6995 6856 6 759 611 155 0 17 chr6 22934681 22934799 -126582238 + CT-rich Low_complexity Low_complexity 2 117 0 6 759 555 265 217 0 chr6 22934804 22935034 -126582003 - Lx2B LINE L1 -4 6996 6717 6 759 231 121 0 0 chr6 22935030 22935063 -126581974 + Lx2B LINE L1 6211 6243 -757 6 760 476 243 70 65 chr6 22937666 22937895 -126579142 - Lx7 LINE L1 -361 5939 5676 6 760 399 319 27 53 chr6 22937952 22937975 -126579062 + L1_Rod LINE L1 5277 5299 -548 6 760 672 36 0 0 chr6 22937975 22938058 -126578979 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 6 760 1308 45 6 16 chr6 22938058 22938240 -126578797 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 760 460 319 27 52 chr6 22938240 22938497 -126578540 + L1_Rod LINE L1 5300 5612 -688 6 760 225 278 14 14 chr6 22939114 22939187 -126577850 + (CATA)n Simple_repeat Simple_repeat 3 75 0 6 760 1185 74 0 0 chr6 22940982 22941130 -126575907 + B1_Mus1 SINE Alu 1 148 0 6 760 26 0 0 0 chr6 22941783 22941809 -126575228 + AT_rich Low_complexity Low_complexity 1 26 0 6 760 713 93 0 9 chr6 22945816 22945924 -126571113 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 6 760 220 291 62 12 chr6 22946836 22946916 -126570121 + L3 LINE CR1 854 937 -3552 6 760 2473 137 7 2 chr6 22947035 22947445 -126569592 + L1_Mur2 LINE L1 4430 4841 -1036 6 760 2638 56 3 9 chr6 22948409 22948752 -126568285 + L1Md_F2 LINE L1 6230 6570 -12 6 760 471 35 0 0 chr6 22949005 22949062 -126567975 + (AATAG)n Simple_repeat Simple_repeat 5 61 0 6 760 195 167 0 0 chr6 22952180 22952222 -126564815 + (ATG)n Simple_repeat Simple_repeat 3 44 0 6 760 22 0 0 0 chr6 22954498 22954520 -126562517 + AT_rich Low_complexity Low_complexity 1 22 0 6 760 593 144 22 39 chr6 22955014 22955195 -126561842 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 6 760 260 83 21 0 chr6 22955235 22955283 -126561754 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 6 760 208 354 52 0 chr6 22955549 22955645 -126561392 - MER5A DNA MER1_type -88 101 1 6 760 23 33 0 0 chr6 22956759 22956789 -126560248 + AT_rich Low_complexity Low_complexity 1 30 0 6 760 23 33 0 0 chr6 22957758 22957788 -126559249 + AT_rich Low_complexity Low_complexity 1 30 0 6 760 24 0 0 0 chr6 22959788 22959812 -126557225 + AT_rich Low_complexity Low_complexity 1 24 0 6 760 286 274 68 37 chr6 22960243 22960406 -126556631 - L1M4 LINE L1 -714 5460 5293 6 760 630 39 0 0 chr6 22960410 22960487 -126556550 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 760 207 293 0 0 chr6 22960494 22960552 -126556485 + (TATATG)n Simple_repeat Simple_repeat 4 61 0 6 760 249 378 49 54 chr6 22960557 22960761 -126556276 - B4A SINE B4 0 292 90 6 760 499 250 45 13 chr6 22960825 22960979 -126556058 - L1M4 LINE L1 -957 5189 5031 6 760 447 330 28 5 chr6 22960980 22961193 -126555844 + L1M4 LINE L1 4704 4921 -1225 6 760 477 0 0 0 chr6 22961232 22961285 -126555752 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 760 465 257 30 0 chr6 22961337 22961438 -126555599 + RSINE1 SINE B4 56 159 -6 6 760 184 430 20 10 chr6 22961594 22961695 -126555342 + MIR3 SINE MIR 6 107 -101 6 760 24 77 0 0 chr6 22963150 22963202 -126553835 + AT_rich Low_complexity Low_complexity 1 52 0 6 760 731 312 40 25 chr6 22964461 22964794 -126552243 + Tigger5 DNA MER2_type 8 289 -2117 6 760 1283 270 28 49 chr6 22966518 22966946 -126550091 - MTD LTR MaLR 0 419 1 6 760 1976 206 25 15 chr6 22967053 22967458 -126549579 - MTD LTR MaLR -10 409 1 6 760 2516 246 157 44 chr6 22967459 22968516 -126548521 - MTD-int LTR MaLR -17 1241 1 6 760 1898 234 5 33 chr6 22968520 22968939 -126548098 - MTD LTR MaLR -2 417 11 6 760 343 68 0 0 chr6 22969306 22969350 -126547687 + Lx9 LINE L1 6957 7000 -644 6 760 1200 55 0 0 chr6 22969350 22969496 -126547541 + B1_Mm SINE Alu 2 147 0 6 760 263 28 28 0 chr6 22969496 22969532 -126547505 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 6 760 1996 244 18 20 chr6 22969532 22970030 -126547007 + Lx9 LINE L1 6985 7481 -163 6 760 207 0 0 0 chr6 22970051 22970074 -126546963 + (CCA)n Simple_repeat Simple_repeat 1 23 0 6 760 226 39 109 73 chr6 22970116 22970171 -126546866 + Lx9 LINE L1 7588 7644 0 6 760 243 343 99 9 chr6 22971700 22971838 -126545199 + B1F SINE Alu 1 148 -1 6 760 25 31 0 0 chr6 22971839 22971871 -126545166 + AT_rich Low_complexity Low_complexity 1 32 0 6 760 303 93 0 0 chr6 22974797 22974840 -126542197 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 760 612 107 0 0 chr6 22975498 22975601 -126541436 + (TCTG)n Simple_repeat Simple_repeat 2 104 0 6 760 486 0 0 0 chr6 22975601 22975655 -126541382 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 760 3257 209 177 9 chr6 22975777 22975852 -126541185 - Lx6 LINE L1 -88 7372 7294 6 760 678 85 0 0 chr6 22975852 22975946 -126541091 + (AATAG)n Simple_repeat Simple_repeat 4 97 0 6 760 3257 209 177 9 chr6 22975946 22976240 -126540797 - Lx6 LINE L1 -167 7293 6898 6 760 297 0 0 0 chr6 22976240 22976273 -126540764 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 760 731 11 0 11 chr6 22976273 22976361 -126540676 + (TG)n Simple_repeat Simple_repeat 1 88 0 6 760 3257 209 177 9 chr6 22976361 22976753 -126540284 - Lx6 LINE L1 -563 6897 6484 6 760 295 328 92 14 chr6 22978564 22978755 -126538282 + MIRb SINE MIR 14 226 -42 6 760 182 62 0 30 chr6 22979135 22979168 -126537869 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6 760 337 295 63 0 chr6 22979424 22979519 -126537518 - ID_B1 SINE B4 -1 223 123 6 760 606 241 0 0 chr6 22979524 22979665 -126537372 + (CCTG)n Simple_repeat Simple_repeat 3 143 0 6 760 753 233 82 5 chr6 22979748 22979942 -126537095 - B3 SINE B2 -7 209 1 6 760 788 247 100 0 chr6 22980282 22980472 -126536565 + B3 SINE B2 1 209 -7 6 760 1633 225 67 3 chr6 22980733 22981108 -126535929 - MTD LTR MaLR -8 411 13 6 760 1172 254 106 12 chr6 22981141 22981631 -126535406 + L1MA8 LINE L1 5749 6284 -7 6 760 1081 234 199 9 chr6 22981719 22982055 -126534982 - MTD LTR MaLR -2 417 18 6 760 226 149 225 75 chr6 22981993 22982073 -126534964 - MT2A LTR ERVL -439 94 3 6 760 900 130 6 22 chr6 22982398 22982579 -126534458 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 6 760 369 43 0 0 chr6 22982580 22982627 -126534410 + (CATA)n Simple_repeat Simple_repeat 4 50 0 6 760 405 153 0 0 chr6 22982633 22982705 -126534332 + (TGG)n Simple_repeat Simple_repeat 1 72 0 6 760 500 262 110 53 chr6 22982900 22983146 -126533891 - MLT2C2 LTR ERVL -204 260 1 6 760 494 235 7 36 chr6 22983177 22983314 -126533723 + L1MA8 LINE L1 6143 6275 -16 6 760 320 330 156 42 chr6 22985416 22985653 -126531384 - MLT1C LTR MaLR -203 264 1 6 760 1086 239 119 68 chr6 22986100 22986495 -126530542 - MTD LTR MaLR 0 419 5 6 760 180 111 0 0 chr6 22988020 22988047 -126528990 + (A)n Simple_repeat Simple_repeat 1 27 0 6 760 929 296 25 25 chr6 22988461 22988729 -126528308 + B4A SINE B4 2 270 -22 6 760 1110 112 0 0 chr6 22988729 22988898 -126528139 + (CA)n Simple_repeat Simple_repeat 1 169 0 6 760 929 296 25 25 chr6 22988898 22988910 -126528127 + B4A SINE B4 271 282 -10 6 760 744 291 6 12 chr6 22988934 22989101 -126527936 + B3A SINE B2 1 166 -32 6 760 594 75 0 0 chr6 22989101 22989181 -126527856 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 760 21 36 0 0 chr6 22989187 22989215 -126527822 + AT_rich Low_complexity Low_complexity 1 28 0 6 760 226 323 0 0 chr6 22989216 22989278 -126527759 + B3A SINE B2 121 182 -16 6 760 24 32 0 0 chr6 22989300 22989331 -126527706 + AT_rich Low_complexity Low_complexity 1 31 0 6 760 289 338 75 27 chr6 22989344 22989490 -126527547 - L2c LINE L2 -56 3331 3179 6 760 468 0 0 0 chr6 22989906 22989958 -126527079 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 760 250 305 21 21 chr6 22989970 22990067 -126526970 - MLT1A LTR MaLR -213 161 65 6 760 284 298 30 9 chr6 22990324 22990459 -126526578 + ID4 SINE ID 2 138 -14 6 760 1005 98 159 0 chr6 22990678 22990841 -126526196 + B2_Mm2 SINE B2 1 189 -6 6 760 303 130 0 0 chr6 22990932 22990986 -126526051 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 760 862 179 0 0 chr6 22991173 22991318 -126525719 - B1_Mur3 SINE Alu -2 147 3 6 760 370 299 19 0 chr6 22991564 22991671 -126525366 + PB1D7 SINE Alu 6 114 -6 7 760 202 208 42 0 chr6 22993828 22993876 -126523161 + MIR SINE MIR 102 151 -111 7 760 1054 75 0 52 chr6 22993876 22994031 -126523006 + B1_Mm SINE Alu 1 147 0 7 760 189 0 0 0 chr6 22994459 22994480 -126522557 + (T)n Simple_repeat Simple_repeat 1 21 0 7 760 23 33 0 0 chr6 22994727 22994757 -126522280 + AT_rich Low_complexity Low_complexity 1 30 0 7 760 207 0 0 0 chr6 22994939 22994962 -126522075 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 760 488 283 41 51 chr6 22994962 22995159 -126521878 - Lx8 LINE L1 -138 7335 7141 7 760 1060 214 14 5 chr6 22996070 22996281 -126520756 - B3 SINE B2 -3 213 1 7 760 30 69 0 0 chr6 22996778 22996836 -126520201 + AT_rich Low_complexity Low_complexity 1 58 0 7 760 838 73 0 0 chr6 22997388 22997498 -126519539 + B1_Mm SINE Alu 38 147 0 7 760 741 122 0 0 chr6 22997500 22997615 -126519422 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 7 760 284 321 7 17 chr6 22997785 22997973 -126519064 - L1M5 LINE L1 -743 5403 5216 7 760 366 367 35 5 chr6 22998372 22998572 -126518465 - L1M5 LINE L1 -1296 4850 4645 7 760 325 171 49 0 chr6 22998914 22998996 -126518041 - Lx5 LINE L1 -3 7047 6962 7 760 647 299 115 33 chr6 22999012 22999282 -126517755 + B4A SINE B4 1 292 0 7 760 21 0 0 0 chr6 23000590 23000611 -126516426 + AT_rich Low_complexity Low_complexity 1 21 0 1 760 295 246 46 0 chr6 23001354 23001419 -126515618 + ID4 SINE ID 2 69 -14 2 760 214 103 0 0 chr6 23001467 23001496 -126515541 + B1F SINE Alu 84 112 -37 3 760 771 42 0 0 chr6 23001505 23001600 -126515437 + (GAA)n Simple_repeat Simple_repeat 2 96 0 4 760 22 56 0 0 chr6 23002619 23002655 -126514382 + AT_rich Low_complexity Low_complexity 1 36 0 5 760 2774 153 140 32 chr6 23002960 23003583 -126513454 - RMER6C LTR ERVK 0 690 1 6 760 253 266 0 30 chr6 23003770 23003836 -126513201 + MER119 DNA MER1_type 465 528 -55 7 760 834 246 63 14 chr6 23003909 23004100 -126512937 - ORR1E LTR MaLR -105 254 53 8 760 4010 166 74 43 chr6 23004100 23004721 -126512316 + RLTR25B LTR ERVK 1 637 -391 9 760 2116 75 82 0 chr6 23004721 23005014 -126512023 + L1_Mus2 LINE L1 6250 6566 0 1 760 4010 202 69 88 chr6 23005014 23005446 -126511591 + RLTR25B LTR ERVK 593 969 -134 9 760 591 15 0 0 chr6 23005446 23005514 -126511523 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 760 2824 237 63 132 chr6 23005514 23005644 -126511393 + RLTR25B LTR ERVK 970 1103 0 9 760 301 143 41 0 chr6 23005649 23005698 -126511339 - ORR1E LTR MaLR -308 51 1 8 760 3046 218 144 47 chr6 23005801 23006432 -126510605 + RMER1A Other Other 168 848 -182 1 760 3235 93 13 2 chr6 23006432 23006897 -126510140 - Lx2A1 LINE L1 -7 7001 6532 1 760 3046 203 25 53 chr6 23006897 23007060 -126509977 + RMER1A Other Other 849 1019 -11 1 760 325 264 74 42 chr6 23007114 23007209 -126509828 + MLT1A0 LTR MaLR 226 323 -42 1 760 202 229 24 24 chr6 23007649 23007734 -126509303 + (CATATA)n Simple_repeat Simple_repeat 4 88 0 1 760 1820 213 44 25 chr6 23007811 23008245 -126508792 + Lx5 LINE L1 6586 7027 -23 1 760 970 108 13 6 chr6 23008272 23008431 -126508606 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 1 760 645 121 0 0 chr6 23010028 23010152 -126506885 + (TC)n Simple_repeat Simple_repeat 2 125 0 1 760 858 137 16 131 chr6 23010156 23010400 -126506637 - RMER1B Other Other -13 1053 838 1 760 37391 33 0 0 chr6 23010406 23015819 -126501218 - L1Md_T LINE L1 0 6582 1170 2 760 4458 145 29 34 chr6 23015825 23016758 -126500279 - L1Md_T LINE L1 -5411 1205 278 2 760 1784 180 133 10 chr6 23016759 23017158 -126499879 - RMER1B Other Other -219 847 400 1 760 1140 108 0 0 chr6 23017489 23017808 -126499229 + (TATG)n Simple_repeat Simple_repeat 1 319 0 2 760 389 260 0 107 chr6 23018363 23018475 -126498562 + B4A SINE B4 1 100 -192 2 760 576 163 8 47 chr6 23018477 23018606 -126498431 - RMER1C Other Other -362 980 857 2 760 769 133 30 12 chr6 23018616 23018783 -126498254 + GA-rich Low_complexity Low_complexity 4 173 0 2 760 1410 180 88 3 chr6 23018783 23019100 -126497937 + RMER1C Other Other 999 1342 0 2 760 555 318 41 10 chr6 23019103 23019300 -126497737 + B4A SINE B4 86 288 -4 2 760 258 140 70 0 chr6 23019365 23019422 -126497615 - L1M4 LINE L1 -830 5316 5256 2 760 2996 176 35 9 chr6 23019506 23020056 -126496981 - Lx5 LINE L1 -5 7045 6482 2 760 8383 33 0 1 chr6 23020081 23021074 -126495963 + L1Md_F2 LINE L1 5588 6579 -3 2 760 2079 184 18 25 chr6 23021078 23021525 -126495512 - Lx5 LINE L1 -545 6505 6062 2 760 785 250 60 37 chr6 23021568 23021917 -126495120 - L1M4 LINE L1 -981 5165 4809 2 760 315 0 0 0 chr6 23022169 23022204 -126494833 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 2 760 261 240 94 55 chr6 23022204 23022323 -126494714 - L1M4 LINE L1 -1992 4154 4031 2 760 1238 260 118 6 chr6 23023345 23023708 -126493329 + Lx6 LINE L1 7030 7433 -27 3 760 450 358 82 5 chr6 23023736 23023955 -126493082 + MER47B DNA MER2_type 21 256 -162 3 760 291 54 0 0 chr6 23026001 23026038 -126490999 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 760 180 0 0 0 chr6 23026076 23026096 -126490941 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 760 243 280 53 0 chr6 23026523 23026598 -126490439 + MER58C DNA MER1_type 129 207 -8 3 760 284 276 0 0 chr6 23027540 23027598 -126489439 - ID4 SINE ID 0 83 26 3 760 225 0 0 0 chr6 23028216 23028241 -126488796 + (CTA)n Simple_repeat Simple_repeat 3 27 0 3 760 291 71 0 0 chr6 23028241 23028283 -126488754 + (TAA)n Simple_repeat Simple_repeat 1 42 0 3 760 1170 142 0 7 chr6 23029280 23029577 -126487460 + (TTGG)n Simple_repeat Simple_repeat 1 295 0 3 760 310 288 15 0 chr6 23030727 23030806 -126486231 + B1F SINE Alu 24 103 -17 3 760 783 59 0 0 chr6 23030815 23030916 -126486121 + (GA)n Simple_repeat Simple_repeat 1 101 0 4 760 513 0 0 0 chr6 23030916 23030972 -126486065 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4 760 2696 147 5 122 chr6 23031817 23032414 -126484623 + RLTR24 LTR ERV1 1 527 -2 4 760 246 293 48 39 chr6 23032535 23032638 -126484399 - MIRb SINE MIR -163 105 2 4 760 744 178 93 0 chr6 23033645 23033774 -126483263 + RMER6D LTR ERVK 580 720 0 4 760 238 336 133 0 chr6 23033858 23034001 -126483036 + MER5B DNA MER1_type 1 162 -16 4 760 302 318 139 0 chr6 23034290 23034419 -126482618 + RSINE1 SINE B4 2 148 -17 4 760 25 51 0 0 chr6 23034560 23034599 -126482438 + AT_rich Low_complexity Low_complexity 1 39 0 4 760 1172 186 33 96 chr6 23035193 23035526 -126481511 + RLTRETN_Mm LTR ERVK 11 322 0 4 760 5535 129 32 91 chr6 23035530 23036729 -126480308 + ETnERV2-int LTR ERVK 3 1130 -3714 4 760 2553 129 31 51 chr6 23036753 23037410 -126479627 + ETnERV2-int LTR ERVK 1731 2187 -2657 4 760 4760 150 30 29 chr6 23037635 23039341 -126477696 + ETnERV2-int LTR ERVK 2356 4085 -3321 4 760 6360 130 15 3 chr6 23039426 23040384 -126476653 + ETnERV2-int LTR ERVK 6222 7190 -216 4 760 468 247 184 56 chr6 23040384 23040704 -126476333 + RLTR13D6 LTR ERVK 156 537 -365 4 760 428 105 24 73 chr6 23040704 23040786 -126476251 + ETnERV2-int LTR ERVK 7329 7406 0 4 760 1070 187 31 143 chr6 23040790 23041140 -126475897 + RLTRETN_Mm LTR ERVK 12 322 0 4 760 209 227 0 0 chr6 23041507 23041551 -126475486 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 760 550 258 55 79 chr6 23041600 23041802 -126475235 + B3A SINE B2 2 198 0 5 760 23 0 0 0 chr6 23041809 23041832 -126475205 + AT_rich Low_complexity Low_complexity 1 23 0 5 760 21 0 0 0 chr6 23041881 23041902 -126475135 + AT_rich Low_complexity Low_complexity 1 21 0 5 760 405 324 46 27 chr6 23043007 23043270 -126473767 + L1ME3A LINE L1 5856 6123 -50 5 760 220 261 0 14 chr6 23043343 23043413 -126473624 + GA-rich Low_complexity Low_complexity 2 70 0 5 760 358 283 32 21 chr6 23043443 23043537 -126473500 - B1F1 SINE Alu -49 100 6 5 760 222 271 17 0 chr6 23043596 23043655 -126473382 + GA-rich Low_complexity Low_complexity 1 60 0 5 760 1528 37 16 5 chr6 23043676 23043864 -126473173 + B2_Mm2 SINE B2 2 191 -4 5 760 1267 109 16 5 chr6 23045693 23045878 -126471159 - B2_Mm2 SINE B2 -7 188 2 5 760 441 129 0 0 chr6 23045982 23046052 -126470985 + (CGTG)n Simple_repeat Simple_repeat 1 70 0 6 760 1230 97 0 5 chr6 23047694 23047911 -126469126 + (TCCC)n Simple_repeat Simple_repeat 1 216 0 6 760 452 218 13 0 chr6 23047938 23048016 -126469021 - PB1D9 SINE Alu -40 80 2 6 760 277 286 67 112 chr6 23048016 23048064 -126468973 - MT2B LTR ERVL -359 226 115 6 760 2944 248 33 6 chr6 23048348 23049041 -126467996 + Lx6 LINE L1 6743 7454 -6 6 760 704 301 164 35 chr6 23049175 23049485 -126467552 + ORR1E LTR MaLR 1 350 -9 6 760 1252 300 35 6 chr6 23049492 23049837 -126467200 + ORR1E-int LTR MaLR 1 355 -1225 6 760 488 265 0 0 chr6 23049849 23049947 -126467090 + B3 SINE B2 5 102 -114 6 760 381 252 14 115 chr6 23049989 23050128 -126466909 + ORR1E-int LTR MaLR 343 467 -1113 6 760 21 0 0 0 chr6 23050189 23050210 -126466827 + AT_rich Low_complexity Low_complexity 1 21 0 6 760 1093 62 7 33 chr6 23050311 23050328 -126466709 - B1_Mus1 SINE Alu 0 148 136 6 760 204 67 0 0 chr6 23050328 23050358 -126466679 + (TTG)n Simple_repeat Simple_repeat 1 30 0 6 760 1093 62 7 33 chr6 23050358 23050491 -126466546 - B1_Mus1 SINE Alu -13 135 2 6 760 254 323 90 0 chr6 23050704 23050859 -126466178 + L1M5 LINE L1 3747 3915 -2231 7 760 234 0 0 0 chr6 23051104 23051130 -126465907 + (GGCTG)n Simple_repeat Simple_repeat 1 26 0 7 760 1777 42 88 4 chr6 23051445 23051684 -126465353 + L1Md_F3 LINE L1 6326 6584 0 7 760 515 211 139 0 chr6 23051941 23052135 -126464902 - Lx9 LINE L1 -1 7643 7423 7 760 673 300 137 13 chr6 23052440 23052754 -126464283 + Lx8 LINE L1 7095 7447 -26 7 760 1083 242 50 13 chr6 23052752 23053054 -126463983 + Lx6 LINE L1 5772 6084 -1376 7 760 1268 275 36 33 chr6 23053053 23053738 -126463299 + Lx6 LINE L1 6455 7434 -26 7 760 709 279 173 63 chr6 23054169 23054533 -126462504 - MTD LTR MaLR -15 404 1 7 760 316 286 31 0 chr6 23054533 23054628 -126462409 + Tigger7 DNA MER2_type 75 172 -2319 7 760 587 276 217 30 chr6 23054709 23055008 -126462029 + Tigger7 DNA MER2_type 2134 2488 -3 7 760 800 175 14 7 chr6 23055087 23055231 -126461806 + B1_Mur3 SINE Alu 1 145 -4 7 760 1075 186 119 20 chr6 23055231 23055484 -126461553 + RMER1B Other Other 778 1055 -11 7 760 29 47 0 0 chr6 23055484 23055527 -126461510 + AT_rich Low_complexity Low_complexity 1 43 0 8 760 219 139 0 0 chr6 23055529 23055565 -126461472 + (ATG)n Simple_repeat Simple_repeat 3 38 0 8 760 462 159 0 0 chr6 23055728 23055835 -126461202 + (CATA)n Simple_repeat Simple_repeat 1 107 0 8 760 350 204 10 83 chr6 23056180 23056276 -126460761 + RSINE1 SINE B4 77 165 0 8 760 29 28 0 0 chr6 23057054 23057090 -126459947 + AT_rich Low_complexity Low_complexity 1 36 0 8 760 233 242 160 32 chr6 23058094 23058188 -126458849 + MER2 DNA MER2_type 26 131 -214 8 760 232 27 54 0 chr6 23058362 23058399 -126458638 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 760 337 349 55 88 chr6 23058564 23058781 -126458256 + LTR75_1 LTR ERV1 268 477 -69 8 760 206 32 32 0 chr6 23059364 23059395 -126457642 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 760 195 338 67 37 chr6 23059851 23059986 -126457051 + MIRb SINE MIR 109 247 -21 8 760 252 200 62 12 chr6 23060068 23060149 -126456888 - Lx9 LINE L1 -251 7393 7309 9 760 355 174 14 0 chr6 23060153 23060222 -126456815 + Lx9 LINE L1 7403 7472 -172 9 760 243 0 0 0 chr6 23060406 23060433 -126456604 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 760 260 267 54 101 chr6 23061016 23061145 -126455892 + MLT1A1 LTR MaLR 271 393 -15 9 760 238 342 13 0 chr6 23061286 23061365 -126455672 + ID4 SINE ID 4 83 0 9 760 281 341 45 0 chr6 23061394 23061526 -126455511 + B1F SINE Alu 11 148 -1 9 760 466 82 0 150 chr6 23061526 23061626 -126455411 + L1_Mus2 LINE L1 6480 6564 -2 9 760 548 74 25 0 chr6 23061666 23061747 -126455290 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 9 760 364 296 117 21 chr6 23061747 23061892 -126455145 + HAL1-3A_ME LINE L1 2284 2442 -416 9 760 494 359 49 66 chr6 23061986 23062559 -126454478 + MTE-int LTR MaLR 1132 1543 -192 9 760 221 324 54 0 chr6 23062952 23063026 -126454011 + ID4 SINE ID 6 83 0 9 760 934 161 161 30 chr6 23064281 23064480 -126452557 - URR1B DNA MER1_type 0 225 1 1 760 763 223 0 0 chr6 23064571 23064701 -126452336 + B3 SINE B2 1 130 -86 1 760 24 0 0 0 chr6 23064721 23064745 -126452292 + AT_rich Low_complexity Low_complexity 1 24 0 1 760 233 229 0 103 chr6 23065776 23065844 -126451193 - PB1D10 SINE Alu -20 97 37 1 760 190 371 102 31 chr6 23065952 23066208 -126450829 + L2 LINE L2 2232 2505 -914 1 760 266 221 145 20 chr6 23066466 23066584 -126450453 - L1M5 LINE L1 -307 5855 5730 1 760 2480 285 72 108 chr6 23066748 23067946 -126449091 + Lx9 LINE L1 6471 7625 -19 1 761 195 100 0 0 chr6 23069182 23069212 -126447825 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 1 761 214 125 0 77 chr6 23069215 23069267 -126447770 + (TCTCTG)n Simple_repeat Simple_repeat 5 52 0 1 761 1454 91 16 0 chr6 23069267 23069453 -126447584 - B2_Mm2 SINE B2 -5 190 2 1 761 268 171 12 62 chr6 23069538 23069619 -126447418 + CT-rich Low_complexity Low_complexity 1 77 0 1 761 214 324 56 14 chr6 23069756 23069828 -126447209 + ID4_ SINE ID 1 75 -8 1 761 296 274 101 28 chr6 23070538 23070647 -126446390 + MIR3 SINE MIR 82 198 -10 1 761 319 257 0 0 chr6 23071299 23071369 -126445668 + ID_B1 SINE B4 124 193 -31 1 761 218 118 29 0 chr6 23072439 23072473 -126444564 + PB1D9 SINE Alu 4 38 -82 1 761 180 0 0 0 chr6 23073153 23073173 -126443864 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 761 404 241 188 36 chr6 23073225 23073249 -126443788 + ID_B1 SINE B4 66 183 -41 1 761 534 219 0 28 chr6 23073249 23073357 -126443680 + PB1D10 SINE Alu 7 111 -6 1 761 23 0 0 0 chr6 23073375 23073398 -126443639 + AT_rich Low_complexity Low_complexity 1 23 0 1 761 5384 62 8 5 chr6 23073402 23074065 -126442972 + L1_Mus1 LINE L1 5903 6567 0 1 761 650 187 112 0 chr6 23075205 23075326 -126441711 + B1_Mur3 SINE Alu 1 136 -13 1 761 360 0 0 0 chr6 23075326 23075366 -126441671 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1 761 650 187 112 0 chr6 23075366 23075378 -126441659 + B1_Mur3 SINE Alu 137 148 -1 1 761 1461 6 0 0 chr6 23075424 23075584 -126441453 - L1Md_A LINE L1 0 6582 6423 1 761 405 0 0 0 chr6 23075912 23075957 -126441080 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 761 1293 159 17 48 chr6 23076164 23076395 -126440642 - URR1B DNA MER1_type 0 225 2 1 761 259 335 86 62 chr6 23076529 23076739 -126440298 - MIR SINE MIR -26 236 22 1 761 220 306 83 0 chr6 23077036 23077108 -126439929 + ID4 SINE ID 3 80 -3 1 761 299 207 0 65 chr6 23077627 23077689 -126439348 - B4A SINE B4 -234 58 1 1 761 6563 57 2 8 chr6 23078115 23078905 -126438132 + L1Md_F2 LINE L1 5783 6568 -14 1 761 408 289 122 30 chr6 23078981 23079016 -126438021 - B3A SINE B2 -6 192 161 1 761 378 57 0 0 chr6 23079016 23079069 -126437968 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 761 408 289 122 30 chr6 23079069 23079197 -126437840 - B3A SINE B2 -38 160 14 1 761 1228 254 83 12 chr6 23079568 23079895 -126437142 + MTEb LTR MaLR 1 350 -29 1 761 791 188 20 53 chr6 23080190 23080342 -126436695 + B1_Mur2 SINE Alu 3 149 0 1 761 957 57 0 8 chr6 23080592 23080715 -126436322 - MTB_Mm LTR MaLR -285 122 1 1 761 188 200 20 0 chr6 23080951 23081001 -126436036 + GA-rich Low_complexity Low_complexity 4 54 0 1 761 350 250 96 0 chr6 23081610 23081714 -126435323 + Kanga1c DNA Tc2 4 117 -612 1 761 338 42 21 0 chr6 23081895 23081943 -126435094 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 761 285 162 0 0 chr6 23082123 23082191 -126434846 + CT-rich Low_complexity Low_complexity 1 68 0 1 761 2182 157 119 8 chr6 23083672 23084050 -126432987 + MTC LTR MaLR 2 421 0 1 761 4573 176 180 50 chr6 23084062 23085154 -126431883 + MTC-int LTR MaLR 2 1237 -21 1 761 465 19 0 0 chr6 23085154 23085208 -126431829 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 761 4573 176 180 50 chr6 23085208 23085228 -126431809 + MTC-int LTR MaLR 1238 1257 -1 1 761 2179 190 36 22 chr6 23085228 23085642 -126431395 + MTC LTR MaLR 1 420 -1 1 761 986 296 70 79 chr6 23085678 23086147 -126430890 + RMER5 LTR ERV1 52 516 -18 1 761 1050 138 200 11 chr6 23086215 23086405 -126430632 - URR1A DNA MER1_type 0 226 1 1 761 2499 69 119 11 chr6 23086909 23087261 -126429776 - RLTR10 LTR ERVK 0 390 1 1 761 905 240 70 5 chr6 23087352 23087553 -126429484 + B3 SINE B2 2 215 -1 1 761 1350 131 92 5 chr6 23087854 23088061 -126428976 - URR1A DNA MER1_type 0 226 2 1 761 8294 38 1 1 chr6 23089406 23090380 -126426657 - L1Md_F2 LINE L1 0 6582 5609 1 761 21 36 0 0 chr6 23090974 23091002 -126426035 + AT_rich Low_complexity Low_complexity 1 28 0 1 761 2497 174 173 26 chr6 23091815 23092348 -126424689 + RMER19C LTR ERVK 1 611 0 1 761 1163 252 153 8 chr6 23092433 23092832 -126424205 + RMER5 LTR ERV1 1 457 -77 1 761 315 298 11 11 chr6 23092985 23093080 -126423957 - MER52-int LTR ERV1 -1214 5877 5783 1 761 323 322 33 33 chr6 23094194 23094406 -126422631 - MMERGLN-int LTR ERV1 -3764 3792 3581 1 761 263 244 154 0 chr6 23094417 23094495 -126422542 + PB1D9 SINE Alu 31 120 0 1 761 395 315 96 19 chr6 23094611 23094771 -126422266 + MLT1D LTR MaLR 268 428 -39 1 761 219 191 0 0 chr6 23096083 23096146 -126420891 + CT-rich Low_complexity Low_complexity 2 64 0 1 761 21 82 0 0 chr6 23096284 23096333 -126420704 + AT_rich Low_complexity Low_complexity 1 49 0 1 761 524 250 137 14 chr6 23096844 23096990 -126420047 - B3 SINE B2 -5 211 48 1 761 605 349 92 41 chr6 23096996 23097408 -126419629 - LTR33 LTR ERVL -62 453 21 1 761 23 0 0 0 chr6 23098724 23098747 -126418290 + AT_rich Low_complexity Low_complexity 1 23 0 1 761 338 87 94 0 chr6 23098928 23099066 -126417971 + (TA)n Simple_repeat Simple_repeat 1 151 0 1 761 227 343 62 28 chr6 23099110 23099287 -126417750 - Lx8 LINE L1 -83 7390 7208 1 761 522 288 134 21 chr6 23099315 23099457 -126417580 - Lx8 LINE L1 -598 7098 6941 1 761 324 0 0 0 chr6 23099457 23099493 -126417544 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 761 522 325 143 20 chr6 23099493 23099659 -126417378 - Lx8 LINE L1 -528 6945 6758 1 761 912 185 58 37 chr6 23099659 23099850 -126417187 - B2_Mm2 SINE B2 0 195 1 1 761 252 231 128 0 chr6 23099954 23100032 -126417005 - B4 SINE B4 -196 96 9 1 761 232 286 22 11 chr6 23100098 23100190 -126416847 - L1MB1 LINE L1 -18 6150 6058 1 761 477 0 0 0 chr6 23100322 23100375 -126416662 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 1 761 503 318 25 31 chr6 23100399 23100561 -126416476 + RSINE1 SINE B4 5 165 0 1 761 429 54 0 0 chr6 23100565 23100621 -126416416 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 761 614 171 0 8 chr6 23100899 23101023 -126416014 + (TA)n Simple_repeat Simple_repeat 1 123 0 1 761 416 339 101 35 chr6 23101027 23101433 -126415604 + L1ME1 LINE L1 5665 6097 -82 1 761 501 17 0 0 chr6 23101478 23101536 -126415501 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 761 469 309 192 17 chr6 23101544 23101784 -126415253 - B4 SINE B4 -10 282 1 1 761 245 250 199 82 chr6 23101985 23102181 -126414856 + MLT1A LTR MaLR 136 354 -20 1 761 273 240 39 26 chr6 23102329 23102406 -126414631 + GA-rich Low_complexity Low_complexity 4 81 0 1 761 357 43 0 0 chr6 23102407 23102454 -126414583 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 1 761 1426 100 11 0 chr6 23102651 23102841 -126414196 + B2_Mm2 SINE B2 4 195 0 1 761 910 207 85 30 chr6 23103195 23103394 -126413643 - B3 SINE B2 -5 211 2 1 761 355 352 64 27 chr6 23103423 23103642 -126413395 - L1MC LINE L1 -1260 4886 4660 1 761 1703 140 0 36 chr6 23103801 23104045 -126412992 - L1_Mur3 LINE L1 -966 4914 4680 1 761 2622 121 12 29 chr6 23104045 23104461 -126412576 - RLTR9E LTR ERVK 0 409 1 1 761 1703 140 0 36 chr6 23104461 23104497 -126412540 - L1_Mur3 LINE L1 -1201 4679 4644 1 761 2004 266 47 82 chr6 23104496 23104700 -126412337 + Lx6 LINE L1 6682 6884 -576 1 761 189 0 0 0 chr6 23104700 23104721 -126412316 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 761 2004 266 47 82 chr6 23104721 23105160 -126411877 + Lx6 LINE L1 6885 7302 -158 1 761 21 0 0 0 chr6 23105211 23105232 -126411805 + AT_rich Low_complexity Low_complexity 1 21 0 1 761 228 200 150 0 chr6 23105323 23105403 -126411634 - L1MDa LINE L1 -1785 4752 4661 1 761 441 268 30 71 chr6 23105431 23105600 -126411437 + RSINE1 SINE B4 2 163 -2 1 761 246 62 0 0 chr6 23105601 23105633 -126411404 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 761 207 176 0 0 chr6 23105636 23105670 -126411367 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 761 290 239 41 49 chr6 23105707 23105830 -126411207 - L1MDa LINE L1 -4589 2044 1923 1 761 1209 84 0 0 chr6 23106789 23106956 -126410081 + (TTCCC)n Simple_repeat Simple_repeat 3 169 0 1 761 800 189 17 75 chr6 23107001 23107241 -126409796 - Lx LINE L1 -1 6653 6428 1 761 1308 206 19 0 chr6 23107238 23107495 -126409542 + L1_Mm LINE L1 5459 5720 -163 1 761 2116 105 0 16 chr6 23107512 23107821 -126409216 - Lx3_Mus LINE L1 -1 7008 6705 1 761 2185 158 64 49 chr6 23110089 23110542 -126406495 - MT2B2 LTR ERVL -124 460 1 1 761 360 0 0 0 chr6 23110675 23110715 -126406322 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 761 387 0 0 0 chr6 23110715 23110757 -126406280 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 761 210 37 0 0 chr6 23111003 23111030 -126406007 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 761 931 144 7 52 chr6 23111032 23111186 -126405851 - B1_Mus1 SINE Alu -1 147 1 1 761 552 207 0 0 chr6 23111186 23111302 -126405735 + RMER3D-int LTR ERVK 1267 1382 -1460 1 761 464 287 60 30 chr6 23111272 23111586 -126405451 + RMER3D-int LTR ERVK 1365 1500 -1342 1 761 617 191 43 25 chr6 23111688 23111849 -126405188 + RMER3D-int LTR ERVK 1541 1704 -1138 1 761 672 144 0 0 chr6 23111849 23111967 -126405070 - L1_Mus2 LINE L1 -649 5234 5117 1 761 6619 94 0 26 chr6 23111964 23113314 -126403723 + L1_Mus2 LINE L1 5255 6566 0 1 761 477 76 0 0 chr6 23114259 23114325 -126402712 + (TTCTC)n Simple_repeat Simple_repeat 4 69 0 1 761 762 173 17 80 chr6 23114347 23114586 -126402451 - Lx LINE L1 -3 6651 6428 1 761 1221 193 20 0 chr6 23114583 23114837 -126402200 + L1_Mm LINE L1 5459 5717 -166 1 761 1936 109 0 32 chr6 23114857 23115171 -126401866 - Lx3_Mus LINE L1 -1 7008 6705 2 761 2201 151 64 51 chr6 23117441 23117895 -126399142 - MT2B2 LTR ERVL -124 460 1 2 761 396 0 0 0 chr6 23118028 23118072 -126398965 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 761 369 0 0 0 chr6 23118072 23118112 -126398925 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 761 210 37 0 0 chr6 23118358 23118385 -126398652 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 761 864 158 7 14 chr6 23118387 23118535 -126398502 - B1_Mus1 SINE Alu -1 147 1 2 761 513 174 9 9 chr6 23118535 23118651 -126398386 + RMER3D-int LTR ERVK 1267 1382 -1460 2 761 381 285 40 30 chr6 23118656 23118935 -126398102 + RMER3D-int LTR ERVK 1382 1500 -1342 2 761 432 208 68 23 chr6 23119029 23119162 -126397875 + RMER3D-int LTR ERVK 1541 1679 -1163 2 761 499 342 135 11 chr6 23119253 23119691 -126397346 - L1MD2 LINE L1 -5500 1047 556 2 761 692 250 6 6 chr6 23120274 23120455 -126396582 + Lx7 LINE L1 5669 5849 -1847 2 761 273 292 23 15 chr6 23120553 23120685 -126396352 - L1M2 LINE L1 -816 5484 5352 2 761 11037 78 4 11 chr6 23120839 23123185 -126393852 - L1_Mus2 LINE L1 0 6566 4236 2 761 311 315 52 52 chr6 23123389 23123580 -126393457 + L1M4 LINE L1 5591 5781 -393 2 761 245 295 124 17 chr6 23123599 23123914 -126393123 + L1MA7 LINE L1 5880 6260 -40 2 761 230 399 122 0 chr6 23124069 23124217 -126392820 - LTR79 LTR ERVL -88 439 274 2 761 241 354 68 14 chr6 23124223 23124369 -126392668 - L2a LINE L2 0 3426 3273 2 761 329 294 36 27 chr6 23124666 23124778 -126392259 + MLT2F LTR ERVL 13 125 -538 2 761 180 0 0 0 chr6 23124840 23124860 -126392177 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 761 349 280 115 48 chr6 23124860 23125025 -126392012 + MLT2F LTR ERVL 480 655 -8 2 761 394 381 107 23 chr6 23125027 23125467 -126391570 - L2a LINE L2 -783 2636 2160 2 761 966 218 23 32 chr6 23125760 23125978 -126391059 + B3 SINE B2 1 216 0 2 761 279 235 98 0 chr6 23126003 23126105 -126390932 + L1MA7 LINE L1 6042 6153 -138 2 761 546 230 182 0 chr6 23126147 23126295 -126390742 + MTD LTR MaLR 32 206 -213 2 761 3335 43 0 14 chr6 23126466 23126887 -126390150 + L1Md_F3 LINE L1 6170 6584 0 2 761 752 235 0 3 chr6 23127274 23127632 -126389405 + (TG)n Simple_repeat Simple_repeat 1 356 0 2 761 226 293 207 20 chr6 23127787 23127937 -126389100 + MER5B DNA MER1_type 1 178 0 2 761 309 298 49 14 chr6 23128182 23128325 -126388712 + MLT1J LTR MaLR 286 433 -79 2 761 1278 65 0 0 chr6 23128335 23129126 -126387911 + (CA)n Simple_repeat Simple_repeat 1 791 0 2 761 1281 61 0 0 chr6 23129140 23129320 -126387717 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 761 22 0 0 0 chr6 23129823 23129845 -126387192 + AT_rich Low_complexity Low_complexity 1 22 0 2 761 277 298 24 81 chr6 23129930 23130054 -126386983 - B3 SINE B2 0 216 100 2 761 205 339 82 8 chr6 23131943 23132065 -126384972 - MIRc SINE MIR -101 167 37 2 761 333 0 0 0 chr6 23133746 23133783 -126383254 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 761 288 53 0 0 chr6 23133783 23133820 -126383217 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 761 180 0 0 0 chr6 23133913 23133933 -126383104 + (T)n Simple_repeat Simple_repeat 1 20 0 2 761 1168 106 11 22 chr6 23134464 23134648 -126382389 + B2_Mm2 SINE B2 1 182 -13 2 761 571 258 8 15 chr6 23134831 23134965 -126382072 + B1_Mur3 SINE Alu 1 133 -16 2 761 970 107 0 0 chr6 23135463 23135594 -126381443 + B2_Mm2 SINE B2 3 133 -62 2 761 589 21 53 0 chr6 23135600 23135695 -126381342 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 761 200 262 0 0 chr6 23135995 23136037 -126381000 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 761 270 313 49 0 chr6 23136459 23136577 -126380460 + MIRb SINE MIR 109 238 -30 2 761 428 288 14 29 chr6 23136616 23136769 -126380268 + PB1D10 SINE Alu 2 150 0 2 761 575 289 113 74 chr6 23139884 23140494 -126376543 - L1ME3A LINE L1 -4 6169 5536 2 761 1031 136 47 47 chr6 23140712 23140905 -126376132 + B2_Mm2 SINE B2 1 193 -2 2 761 23 54 0 0 chr6 23141081 23141118 -126375919 + AT_rich Low_complexity Low_complexity 1 37 0 2 761 261 0 0 0 chr6 23141288 23141317 -126375720 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 761 1061 247 73 0 chr6 23141569 23141828 -126375209 + B4A SINE B4 1 278 -14 2 761 220 231 19 0 chr6 23141837 23141889 -126375148 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 2 761 192 125 0 0 chr6 23142090 23142122 -126374915 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 761 1001 138 54 6 chr6 23142122 23142290 -126374747 - B2_Mm2 SINE B2 -19 176 1 2 761 29 28 0 0 chr6 23142295 23142331 -126374706 + AT_rich Low_complexity Low_complexity 1 36 0 2 761 555 261 42 152 chr6 23142364 23142581 -126374456 + B3A SINE B2 1 198 0 2 761 247 198 44 0 chr6 23142872 23142963 -126374074 + (TA)n Simple_repeat Simple_repeat 2 96 0 2 761 628 208 84 8 chr6 23143343 23143474 -126373563 + B1_Mur1 SINE Alu 2 142 -7 2 761 21 0 0 0 chr6 23144209 23144230 -126372807 + AT_rich Low_complexity Low_complexity 1 21 0 2 761 1113 300 85 8 chr6 23144955 23145345 -126371692 + MLT1C LTR MaLR 6 425 -42 2 761 302 0 26 0 chr6 23145381 23145419 -126371618 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 761 444 51 0 0 chr6 23145442 23145501 -126371536 + (TATG)n Simple_repeat Simple_repeat 2 60 0 2 761 429 255 272 15 chr6 23145563 23145758 -126371279 - B4A SINE B4 -45 247 3 2 761 437 231 6 0 chr6 23146502 23146675 -126370362 + (TG)n Simple_repeat Simple_repeat 1 174 0 2 761 421 227 12 0 chr6 23146701 23146873 -126370164 + (TG)n Simple_repeat Simple_repeat 1 174 0 2 761 3380 124 112 28 chr6 23146891 23147176 -126369861 - RMER6C LTR ERVK 0 690 365 2 761 237 24 71 0 chr6 23147176 23147218 -126369819 + (CACTG)n Simple_repeat Simple_repeat 1 45 0 2 761 3380 124 112 28 chr6 23147218 23147569 -126369468 - RMER6C LTR ERVK -326 364 1 2 761 360 94 0 0 chr6 23147619 23147672 -126369365 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 761 295 264 159 11 chr6 23147733 23147821 -126369216 - B4A SINE B4 -41 251 151 2 761 264 298 0 88 chr6 23147838 23147963 -126369074 - B3A SINE B2 -83 115 2 2 761 391 284 43 31 chr6 23148366 23148544 -126368493 + MIR SINE MIR 2 189 -79 2 761 1369 23 122 0 chr6 23148637 23148809 -126368228 - B2_Mm1t SINE B2 0 193 1 2 761 216 0 0 0 chr6 23149177 23149201 -126367836 + (A)n Simple_repeat Simple_repeat 1 24 0 2 761 313 338 69 56 chr6 23149385 23149433 -126367604 + ID_B1 SINE B4 43 204 -20 2 761 338 286 116 0 chr6 23149433 23149545 -126367492 + B1F1 SINE Alu 5 129 -20 2 761 1039 283 22 7 chr6 23149562 23149836 -126367201 + B4A SINE B4 1 278 -14 2 761 335 222 18 44 chr6 23149838 23149978 -126367059 + (CATATA)n Simple_repeat Simple_repeat 1 136 0 2 761 273 286 74 7 chr6 23150005 23150116 -126366921 + ID4_ SINE ID 5 119 -33 2 761 728 217 70 100 chr6 23150104 23150304 -126366733 + B3A SINE B2 5 198 0 2 761 4607 88 22 15 chr6 23150306 23150975 -126366062 - Lx LINE L1 0 6654 5981 2 761 5679 42 1 3 chr6 23151307 23151995 -126365042 - L1Md_T LINE L1 -1 6581 5895 2 761 225 320 163 16 chr6 23153460 23153644 -126363393 + L2a LINE L2 3204 3414 -12 2 761 456 272 79 29 chr6 23154814 23154954 -126362083 + B1F SINE Alu 3 149 0 2 761 849 239 0 6 chr6 23155140 23155304 -126361733 + B3 SINE B2 5 167 -49 2 761 348 295 0 28 chr6 23156173 23156281 -126360756 - MTD LTR MaLR -314 105 1 2 761 915 127 6 20 chr6 23156322 23156500 -126360537 + B2_Mm2 SINE B2 2 170 -23 2 761 270 81 0 0 chr6 23156638 23156675 -126360362 + (TTG)n Simple_repeat Simple_repeat 2 38 0 2 761 379 311 24 18 chr6 23156766 23156936 -126360101 + ERVL-E-int LTR ERVL 2962 3132 -2535 2 761 442 375 53 53 chr6 23157295 23157540 -126359497 + LTR16A LTR ERVL 201 445 -6 2 761 752 235 94 25 chr6 23157600 23157801 -126359236 + B3 SINE B2 2 216 0 2 761 518 303 15 8 chr6 23158487 23158620 -126358417 - B1_Mus2 SINE Alu -12 135 2 2 761 338 42 21 0 chr6 23158633 23158681 -126358356 + (TAA)n Simple_repeat Simple_repeat 1 49 0 2 761 195 100 0 0 chr6 23159033 23159063 -126357974 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 761 192 97 0 0 chr6 23159782 23159813 -126357224 + (G)n Simple_repeat Simple_repeat 1 31 0 2 761 474 18 0 0 chr6 23160672 23160727 -126356310 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 761 410 0 20 0 chr6 23160727 23160776 -126356261 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 761 461 221 221 0 chr6 23160945 23161067 -126355970 + B1F SINE Alu 1 149 0 2 761 189 267 62 36 chr6 23161070 23161154 -126355883 + MIRc SINE MIR 145 236 -32 2 761 200 222 22 0 chr6 23161167 23161212 -126355825 + (CAT)n Simple_repeat Simple_repeat 1 46 0 2 761 257 288 38 0 chr6 23161293 23161373 -126355664 + ID2 SINE ID 1 83 0 2 761 707 277 96 51 chr6 23162333 23162804 -126354233 + L1MC LINE L1 3762 4253 -1893 2 761 519 60 0 0 chr6 23163035 23163102 -126353935 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 761 297 209 0 0 chr6 23163385 23163452 -126353585 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 2 761 366 300 48 91 chr6 23163459 23163690 -126353347 + L1MC3 LINE L1 6867 7087 -698 2 761 12324 70 10 2 chr6 23163742 23166129 -126350908 - L1Md_F2 LINE L1 -4 6578 4180 2 761 420 20 0 0 chr6 23167030 23167079 -126349958 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 761 266 355 45 0 chr6 23167523 23167633 -126349404 - PB1D10 SINE Alu -1 116 2 2 761 219 319 0 0 chr6 23167579 23167651 -126349386 - B4A SINE B4 -152 140 69 2 761 491 348 53 28 chr6 23167721 23167792 -126349245 - B4A SINE B4 0 292 217 3 761 306 0 0 0 chr6 23167792 23167826 -126349211 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 3 761 491 348 53 28 chr6 23167826 23168038 -126348999 - B4A SINE B4 -76 216 3 3 761 543 275 72 43 chr6 23168199 23168408 -126348629 - B3 SINE B2 -1 215 1 3 761 368 55 0 18 chr6 23168412 23168468 -126348569 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 761 937 266 26 22 chr6 23168863 23169136 -126347901 + B4A SINE B4 1 274 -18 3 761 1035 225 14 0 chr6 23169238 23169451 -126347586 + B3 SINE B2 1 216 0 3 761 22 0 0 0 chr6 23169451 23169473 -126347564 + AT_rich Low_complexity Low_complexity 1 22 0 3 761 470 168 90 7 chr6 23169605 23169749 -126347288 - Lx9 LINE L1 -1 7643 7488 3 761 510 229 0 0 chr6 23170127 23170306 -126346731 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 3 761 372 179 74 0 chr6 23170349 23170444 -126346593 + B1_Mus2 SINE Alu 42 143 -4 3 761 212 150 66 16 chr6 23170468 23170529 -126346508 + A-rich Low_complexity Low_complexity 2 65 0 3 761 558 79 0 0 chr6 23170715 23170791 -126346246 + (GGA)n Simple_repeat Simple_repeat 3 78 0 3 761 225 219 0 0 chr6 23170802 23170875 -126346162 + (ATG)n Simple_repeat Simple_repeat 3 75 0 3 761 315 0 0 0 chr6 23171098 23171133 -126345904 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 761 182 62 0 30 chr6 23171268 23171301 -126345736 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 761 414 0 0 0 chr6 23171301 23171346 -126345691 + (GTTTG)n Simple_repeat Simple_repeat 5 50 0 3 761 752 200 43 0 chr6 23171356 23171496 -126345541 - B1_Mus1 SINE Alu -2 146 1 3 761 249 33 0 0 chr6 23171954 23171984 -126345053 + (A)n Simple_repeat Simple_repeat 1 30 0 3 761 225 289 119 34 chr6 23172057 23172175 -126344862 + L1ME2z LINE L1 103 230 -7104 3 761 333 268 55 0 chr6 23172483 23172584 -126344453 + B1F2 SINE Alu 12 128 -21 3 761 363 304 98 55 chr6 23172830 23173085 -126343952 + L1ME2z LINE L1 5605 5876 -1130 3 761 359 277 38 12 chr6 23173270 23173422 -126343615 + L1ME2z LINE L1 6123 6273 -1031 3 761 378 136 0 0 chr6 23173491 23173572 -126343465 + (TCTCTG)n Simple_repeat Simple_repeat 2 82 0 3 761 351 0 0 0 chr6 23173591 23173630 -126343407 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 761 992 137 25 85 chr6 23173690 23173889 -126343148 - IAPEz-int LTR ERVK -6286 195 9 3 761 2457 95 51 56 chr6 23173890 23174303 -126342734 - IAPLTR2a LTR ERVK 0 411 1 3 761 964 210 9 9 chr6 23174400 23174616 -126342421 + MTD LTR MaLR 184 399 -20 3 761 580 277 128 0 chr6 23174641 23174923 -126342114 + L1ME2z LINE L1 6979 7296 -8 3 761 527 241 50 56 chr6 23175040 23175220 -126341817 + MER63A DNA AcHobo 21 199 -11 3 761 288 53 0 0 chr6 23175220 23175258 -126341779 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 761 248 376 46 64 chr6 23176087 23176260 -126340777 - MLT1J-int LTR MaLR -457 930 761 3 761 329 0 24 0 chr6 23176274 23176315 -126340722 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 3 761 759 169 0 0 chr6 23176347 23176477 -126340560 - B2_Mm2 SINE B2 -65 130 1 3 761 1971 251 0 22 chr6 23177292 23177700 -126339337 + Lx7 LINE L1 6391 6789 -907 3 761 271 343 96 28 chr6 23177788 23178037 -126339000 - MERVL_2A-int LTR ERVL -3022 2739 2474 3 761 241 312 0 38 chr6 23178454 23178534 -126338503 - Tigger7 DNA MER2_type -28 2463 2387 3 761 260 286 12 23 chr6 23178521 23178607 -126338430 - Tigger7 DNA MER2_type -1447 1044 960 3 761 741 314 67 22 chr6 23178607 23178923 -126338114 - Tigger7 DNA MER2_type -2146 345 16 3 761 311 341 38 28 chr6 23179276 23179479 -126337558 + MIRc SINE MIR 39 236 -32 3 761 265 329 86 40 chr6 23180083 23180257 -126336780 - MER20 DNA MER1_type -37 182 1 3 761 230 125 21 0 chr6 23180372 23180420 -126336617 + (TCTCTG)n Simple_repeat Simple_repeat 2 50 0 3 761 180 250 0 0 chr6 23180454 23180518 -126336519 + CT-rich Low_complexity Low_complexity 2 65 0 3 761 233 250 33 0 chr6 23180594 23180654 -126336383 + ORR1E LTR MaLR 1 62 -297 3 761 1492 284 8 8 chr6 23181272 23181648 -126335389 + Lx8 LINE L1 6188 6563 -910 3 761 718 290 65 0 chr6 23181786 23182000 -126335037 + Lx8 LINE L1 6908 7135 -338 3 761 783 203 0 7 chr6 23182657 23182806 -126334231 + B1_Mur2 SINE Alu 1 148 -1 3 761 205 29 29 29 chr6 23182814 23182849 -126334188 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 761 23 0 0 0 chr6 23182955 23182978 -126334059 + AT_rich Low_complexity Low_complexity 1 23 0 3 761 9109 74 44 4 chr6 23183053 23184322 -126332715 + Lx5 LINE L1 4449 5761 -1289 3 761 787 257 9 112 chr6 23184419 23184651 -126332386 + B3 SINE B2 3 210 -6 3 761 474 18 0 0 chr6 23184761 23184816 -126332221 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 761 791 164 43 7 chr6 23185236 23185377 -126331660 - B1_Mus1 SINE Alu 0 148 3 3 761 4211 122 55 19 chr6 23185423 23186126 -126330911 - Lx2A1 LINE L1 0 7008 6280 3 761 321 233 0 0 chr6 23186389 23186475 -126330562 + (ATG)n Simple_repeat Simple_repeat 3 88 0 3 761 647 119 0 0 chr6 23187005 23187106 -126329931 + L1VL1 LINE L1 1 101 -6321 3 761 5114 60 0 2 chr6 23187103 23187737 -126329300 + L1Md_F2 LINE L1 4954 5586 -297 3 761 8361 42 2 0 chr6 23187738 23188731 -126328306 + L1Md_F2 LINE L1 5588 6582 0 3 761 265 347 10 0 chr6 23188736 23188834 -126328203 + B4 SINE B4 112 210 -82 3 761 246 299 71 20 chr6 23188856 23188955 -126328082 + MLT1B LTR MaLR 245 348 -42 3 761 607 319 55 52 chr6 23189028 23189355 -126327682 - Lx8 LINE L1 -96 7377 7050 3 761 321 35 69 0 chr6 23189365 23189423 -126327614 + (TTTTTG)n Simple_repeat Simple_repeat 3 64 0 3 761 385 241 66 5 chr6 23189423 23189526 -126327511 - Lx8 LINE L1 -438 7035 6930 3 761 1435 225 41 20 chr6 23189535 23189775 -126327262 - MTD LTR MaLR -59 360 110 3 761 186 71 0 0 chr6 23189775 23189803 -126327234 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 761 1435 225 41 20 chr6 23189803 23189907 -126327130 - MTD LTR MaLR -310 109 9 3 761 2318 138 85 15 chr6 23190815 23191205 -126325832 - MTC LTR MaLR -4 417 1 3 761 378 0 0 0 chr6 23191429 23191471 -126325566 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 761 659 182 0 65 chr6 23191774 23191927 -126325110 - B1_Mur1 SINE Alu -2 147 5 3 761 242 267 0 16 chr6 23192928 23192989 -126324048 + CT-rich Low_complexity Low_complexity 4 63 0 3 761 363 73 0 0 chr6 23194920 23194975 -126322062 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 761 225 279 0 0 chr6 23195776 23195844 -126321193 + (CGG)n Simple_repeat Simple_repeat 2 69 0 3 761 731 11 11 0 chr6 23197166 23197254 -126319783 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 3 762 185 111 0 53 chr6 23200872 23200910 -126316127 + C-rich Low_complexity Low_complexity 5 40 0 3 762 390 42 0 0 chr6 23201111 23201159 -126315878 + (T)n Simple_repeat Simple_repeat 1 48 0 3 762 360 0 0 0 chr6 23202136 23202176 -126314861 + (TTG)n Simple_repeat Simple_repeat 3 42 0 3 762 183 42 0 0 chr6 23202176 23202199 -126314838 + (ATG)n Simple_repeat Simple_repeat 3 26 0 3 762 297 235 24 48 chr6 23202541 23202666 -126314371 + RMER1C Other Other 1221 1342 0 3 762 189 94 0 0 chr6 23203319 23203351 -126313686 + (A)n Simple_repeat Simple_repeat 1 32 0 3 762 426 20 0 0 chr6 23204499 23204550 -126312487 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 762 353 215 70 61 chr6 23205029 23205143 -126311894 + PB1D7 SINE Alu 5 119 -1 3 762 477 0 0 0 chr6 23206159 23206212 -126310825 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 762 351 0 0 0 chr6 23206212 23206250 -126310787 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 762 423 0 0 0 chr6 23206880 23206927 -126310110 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 762 255 61 0 0 chr6 23207408 23207441 -126309596 + (A)n Simple_repeat Simple_repeat 1 33 0 3 762 234 0 0 0 chr6 23207560 23207586 -126309451 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 762 559 169 16 0 chr6 23208642 23208766 -126308271 + CT-rich Low_complexity Low_complexity 1 126 0 3 762 742 150 31 0 chr6 23209487 23209614 -126307423 + B1_Mur3 SINE Alu 6 136 -13 3 762 240 173 57 19 chr6 23209666 23209719 -126307318 - tRNA-Ala-GCA tRNA tRNA -15 60 6 3 762 411 145 0 0 chr6 23210159 23210228 -126306809 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 762 406 285 23 16 chr6 23212184 23212312 -126304725 + PB1 SINE Alu 1 124 -3 3 762 22 35 0 0 chr6 23212392 23212421 -126304616 + AT_rich Low_complexity Low_complexity 1 29 0 3 762 24 32 0 0 chr6 23214127 23214158 -126302879 + AT_rich Low_complexity Low_complexity 1 31 0 3 762 21 36 0 0 chr6 23214493 23214521 -126302516 + AT_rich Low_complexity Low_complexity 1 28 0 3 762 207 0 0 0 chr6 23214525 23214548 -126302489 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 762 358 250 133 9 chr6 23214551 23214656 -126302381 - RSINE1 SINE B4 -44 121 4 3 762 22 35 0 0 chr6 23215825 23215854 -126301183 + AT_rich Low_complexity Low_complexity 1 29 0 3 762 345 47 0 0 chr6 23216422 23216465 -126300572 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 3 762 697 209 17 0 chr6 23216474 23216651 -126300386 + CT-rich Low_complexity Low_complexity 1 180 0 3 762 371 310 0 8 chr6 23217047 23217177 -126299860 + B1F1 SINE Alu 10 138 -11 3 762 216 266 87 0 chr6 23217169 23217245 -126299792 + ID4_ SINE ID 11 92 -60 3 762 294 349 26 32 chr6 23218279 23218433 -126298604 - MER5A DNA MER1_type 0 189 37 3 762 438 167 0 0 chr6 23218467 23218551 -126298486 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 762 225 94 0 0 chr6 23219136 23219168 -126297869 + (T)n Simple_repeat Simple_repeat 1 32 0 3 762 258 105 0 0 chr6 23219383 23219421 -126297616 + (A)n Simple_repeat Simple_repeat 1 38 0 3 762 203 167 0 0 chr6 23219735 23219777 -126297260 + A-rich Low_complexity Low_complexity 2 43 0 3 762 29 0 0 0 chr6 23220530 23220559 -126296478 + AT_rich Low_complexity Low_complexity 1 29 0 3 762 354 97 28 37 chr6 23222123 23222230 -126294807 + A-rich Low_complexity Low_complexity 4 109 0 3 762 324 0 0 0 chr6 23222529 23222565 -126294472 + (A)n Simple_repeat Simple_repeat 1 36 0 3 762 293 111 69 0 chr6 23223979 23224051 -126292986 + GA-rich Low_complexity Low_complexity 4 80 0 3 762 768 128 18 24 chr6 23224068 23224236 -126292801 + GA-rich Low_complexity Low_complexity 4 170 0 3 762 218 81 27 0 chr6 23224436 23224473 -126292564 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 762 236 273 30 0 chr6 23225223 23225289 -126291748 + ID4 SINE ID 1 68 -15 4 762 788 254 81 0 chr6 23225630 23225827 -126291210 - ID_B1 SINE B4 -9 215 3 4 762 451 314 0 0 chr6 23226686 23226804 -126290233 - ID_B1 SINE B4 0 224 107 4 762 279 0 0 0 chr6 23227814 23227845 -126289192 + (TAA)n Simple_repeat Simple_repeat 3 33 0 4 762 189 257 84 14 chr6 23227902 23227973 -126289064 + MIRm SINE MIR 192 267 -9 4 762 321 191 29 14 chr6 23228147 23228216 -126288821 + ID SINE ID 16 85 -139 4 762 849 275 36 4 chr6 23229457 23229709 -126287328 + L3b LINE CR1 9 268 -214 4 762 203 88 29 0 chr6 23230623 23230657 -126286380 + (TTC)n Simple_repeat Simple_repeat 2 36 0 4 762 1081 62 86 6 chr6 23232293 23232456 -126284581 + L1Md_F2 LINE L1 6407 6582 0 4 762 414 0 0 0 chr6 23232480 23232526 -126284511 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 762 739 102 41 12 chr6 23232549 23232718 -126284319 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 4 762 374 322 11 0 chr6 23232718 23232808 -126284229 - PB1D10 SINE Alu -26 91 1 4 762 752 259 19 0 chr6 23233855 23234013 -126283024 - RSINE1 SINE B4 -3 162 2 4 762 193 333 0 0 chr6 23234317 23234365 -126282672 - MIR SINE MIR -129 79 32 4 762 237 65 0 0 chr6 23234637 23234668 -126282369 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 762 457 257 40 4 chr6 23234668 23234802 -126282235 - RSINE1 SINE B4 -149 143 3 4 762 663 213 170 47 chr6 23234802 23235013 -126282024 - B4A SINE B4 -54 238 2 4 762 266 50 25 0 chr6 23235139 23235179 -126281858 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 4 762 201 121 0 0 chr6 23236860 23236893 -126280144 + (A)n Simple_repeat Simple_repeat 1 33 0 4 762 406 288 73 42 chr6 23238048 23238240 -126278797 - B3A SINE B2 0 198 1 4 762 197 33 0 32 chr6 23239351 23239382 -126277655 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 4 762 872 271 14 5 chr6 23239382 23239590 -126277447 - ID_B1 SINE B4 -13 211 2 4 762 6221 43 49 0 chr6 23239997 23240767 -126276270 + RLTR13C2 LTR ERVK 1 808 0 4 762 468 132 0 0 chr6 23242000 23242083 -126274954 + (TGG)n Simple_repeat Simple_repeat 3 85 0 4 762 585 0 0 0 chr6 23242721 23242786 -126274251 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 762 263 180 0 32 chr6 23243884 23243947 -126273090 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 4 762 262 350 41 10 chr6 23244060 23244158 -126272879 - B4A SINE B4 -191 101 1 4 762 351 244 213 74 chr6 23244746 23244976 -126272061 - MIR SINE MIR 0 262 1 4 762 311 286 78 109 chr6 23245085 23245368 -126271669 - B4A SINE B4 -18 274 1 4 762 349 300 156 7 chr6 23245423 23245564 -126271473 - RSINE1 SINE B4 0 165 4 4 762 306 0 0 0 chr6 23245658 23245692 -126271345 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 762 729 287 32 0 chr6 23245695 23245852 -126271185 - B3A SINE B2 -36 162 1 4 762 216 0 0 0 chr6 23246063 23246087 -126270950 + (T)n Simple_repeat Simple_repeat 1 24 0 4 762 564 242 80 8 chr6 23246090 23246215 -126270822 + ID_B1 SINE B4 80 213 -11 4 762 328 218 35 93 chr6 23246379 23246465 -126270572 - B1_Mur1 SINE Alu -27 122 42 4 762 384 184 0 0 chr6 23246486 23246584 -126270453 + CT-rich Low_complexity Low_complexity 2 99 0 4 762 292 153 0 63 chr6 23246593 23246656 -126270381 - PB1D9 SINE Alu -61 59 1 4 762 474 283 87 27 chr6 23247160 23247309 -126269728 - RSINE1 SINE B4 -3 162 5 4 762 328 272 79 12 chr6 23247313 23247477 -126269560 - L1MC LINE L1 -997 5149 4975 4 762 203 299 25 49 chr6 23248055 23248136 -126268901 + L3 LINE CR1 4227 4305 -184 4 762 921 198 63 39 chr6 23248798 23249082 -126267955 + Lx5 LINE L1 849 1139 -5947 4 762 4977 158 36 2 chr6 23249082 23250004 -126267033 + Lx5 LINE L1 4790 5742 -135 4 762 360 0 0 0 chr6 23250004 23250044 -126266993 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 762 5885 179 18 26 chr6 23250060 23251262 -126265775 + Lx5 LINE L1 5856 7047 -3 4 762 882 66 0 0 chr6 23252137 23252259 -126264778 + (TGGA)n Simple_repeat Simple_repeat 2 123 0 4 762 342 0 0 0 chr6 23252590 23252628 -126264409 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 762 269 191 60 60 chr6 23252662 23252729 -126264308 + Charlie12 DNA MER1_type 2807 2873 0 4 762 246 211 66 11 chr6 23253086 23253177 -126263860 + CT-rich Low_complexity Low_complexity 2 97 0 4 762 792 228 42 28 chr6 23253179 23253391 -126263646 - ID_B1 SINE B4 -7 217 3 4 762 253 256 24 12 chr6 23253406 23253489 -126263548 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 4 762 531 291 7 29 chr6 23253494 23253632 -126263405 - RSINE1 SINE B4 -2 163 29 4 762 818 188 7 7 chr6 23254788 23254933 -126262104 - B1_Mur3 SINE Alu -1 148 4 4 762 1203 34 7 7 chr6 23256409 23256555 -126260482 + B1_Mus2 SINE Alu 2 147 0 4 762 238 357 95 0 chr6 23258085 23258169 -126258868 + Charlie15a DNA MER1_type 70 161 -63 4 762 292 321 94 39 chr6 23258964 23259246 -126257791 + L2a LINE L2 3035 3391 -35 4 762 414 0 0 0 chr6 23259779 23259825 -126257212 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 762 1053 51 0 0 chr6 23260923 23261061 -126255976 - L1_Mus1 LINE L1 -429 6138 6001 4 762 1535 62 0 14 chr6 23261061 23261274 -126255763 + L1_Mus1 LINE L1 6358 6567 0 4 762 419 223 10 21 chr6 23261891 23261987 -126255050 - B1_Mur3 SINE Alu 0 149 55 4 762 318 246 158 62 chr6 23262187 23262370 -126254667 + MTEb LTR MaLR 163 336 -43 4 762 260 303 40 0 chr6 23263929 23264005 -126253032 - ID4_ SINE ID -3 80 2 4 762 297 0 0 0 chr6 23264681 23264714 -126252323 + (T)n Simple_repeat Simple_repeat 1 33 0 4 762 634 105 9 9 chr6 23265413 23265519 -126251518 + (TC)n Simple_repeat Simple_repeat 1 106 0 4 762 507 73 0 0 chr6 23265519 23265587 -126251450 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 762 351 253 176 11 chr6 23266338 23266514 -126250523 - B3 SINE B2 -11 205 1 4 762 1246 41 0 0 chr6 23266823 23266969 -126250068 + B1_Mus2 SINE Alu 2 147 0 4 762 449 125 21 10 chr6 23267021 23267118 -126249919 + L1Md_F2 LINE L1 6484 6581 -1 4 762 326 23 0 23 chr6 23267572 23267616 -126249421 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 762 646 321 62 0 chr6 23267633 23267907 -126249130 - B4 SINE B4 -1 291 1 4 762 300 243 143 19 chr6 23268515 23268620 -126248417 - LFSINE_Vert SINE SINE -260 199 82 4 762 209 178 44 0 chr6 23268953 23268998 -126248039 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 4 762 183 326 0 20 chr6 23269385 23269435 -126247602 - MIRm SINE MIR -3 273 225 4 762 1372 66 28 0 chr6 23269568 23269750 -126247287 + B2_Mm2 SINE B2 5 191 -4 4 762 182 37 37 0 chr6 23270262 23270289 -126246748 + (TGGGGG)n Simple_repeat Simple_repeat 1 28 0 4 762 297 109 0 0 chr6 23270791 23270846 -126246191 + (A)n Simple_repeat Simple_repeat 1 55 0 4 762 207 0 0 0 chr6 23270867 23270890 -126246147 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 762 209 33 33 0 chr6 23271149 23271179 -126245858 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 762 353 277 59 0 chr6 23271264 23271365 -126245672 - RSINE1 SINE B4 0 165 59 4 762 320 209 95 50 chr6 23272211 23272381 -126244656 - RMER17D LTR ERVK -337 552 322 4 762 198 0 0 0 chr6 23275902 23275924 -126241113 + (GGGTG)n Simple_repeat Simple_repeat 1 22 0 4 762 287 333 134 8 chr6 23277626 23277753 -126239284 + MIR SINE MIR 104 246 -16 4 762 336 275 0 0 chr6 23279731 23279811 -126237226 - ID4 SINE ID -2 81 2 4 762 24 77 0 0 chr6 23279908 23279960 -126237077 + AT_rich Low_complexity Low_complexity 1 52 0 4 762 2228 115 12 3 chr6 23279960 23280300 -126236737 - Lx2 LINE L1 -1 6996 6654 4 762 909 35 0 0 chr6 23280587 23280700 -126236337 + (CA)n Simple_repeat Simple_repeat 2 114 0 4 762 246 32 0 0 chr6 23281531 23281562 -126235475 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 762 840 338 4 37 chr6 23281618 23281805 -126235232 + B4A SINE B4 29 211 -81 4 762 441 0 0 0 chr6 23281805 23281854 -126235183 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 762 840 338 4 37 chr6 23281854 23281939 -126235098 + B4A SINE B4 212 292 0 4 762 383 358 44 12 chr6 23282296 23282495 -126234542 - MIRb SINE MIR -16 246 40 4 762 225 132 0 0 chr6 23282750 23282788 -126234249 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 4 762 397 280 11 11 chr6 23283590 23283783 -126233254 + (TCTA)n Simple_repeat Simple_repeat 1 193 0 4 762 417 250 0 0 chr6 23283710 23283790 -126233247 + (TCTCTG)n Simple_repeat Simple_repeat 3 82 0 4 762 256 232 71 14 chr6 23284110 23284180 -126232857 + L2b LINE L2 3302 3375 0 4 762 548 53 13 0 chr6 23284721 23284797 -126232240 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 762 253 271 43 76 chr6 23285196 23285288 -126231749 - B1_Mur1 SINE Alu -21 128 40 4 762 715 215 6 58 chr6 23286380 23286553 -126230484 - RSINE1 SINE B4 0 165 2 4 762 369 0 0 0 chr6 23286690 23286731 -126230306 + (TATG)n Simple_repeat Simple_repeat 3 43 0 4 762 405 0 0 0 chr6 23289855 23289900 -126227137 + (TAA)n Simple_repeat Simple_repeat 3 47 0 4 762 562 279 118 0 chr6 23290427 23290588 -126226449 + B3A SINE B2 1 180 -18 4 762 356 217 11 0 chr6 23290588 23290680 -126226357 + (CA)n Simple_repeat Simple_repeat 2 94 0 4 762 6567 148 34 7 chr6 23290723 23291836 -126225201 + Lx2B LINE L1 5853 6995 -5 4 762 449 310 31 8 chr6 23292204 23292334 -126224703 - B4 SINE B4 -121 171 39 4 762 214 232 204 5 chr6 23292872 23292978 -126224059 - MIRb SINE MIR -84 184 61 5 762 21 36 0 0 chr6 23293205 23293233 -126223804 + AT_rich Low_complexity Low_complexity 1 28 0 5 762 21 0 0 0 chr6 23293253 23293274 -126223763 + AT_rich Low_complexity Low_complexity 1 21 0 5 762 5735 2 0 0 chr6 23294484 23295114 -126221923 - L1Md_A LINE L1 0 6582 5953 5 762 297 320 29 19 chr6 23295548 23295653 -126221384 + ORR1E LTR MaLR 1 106 -253 5 762 1232 91 0 0 chr6 23296278 23296443 -126220594 + B2_Mm2 SINE B2 1 165 -30 5 762 329 162 15 0 chr6 23296478 23296546 -126220491 + (TA)n Simple_repeat Simple_repeat 1 69 0 5 762 27 29 0 0 chr6 23296546 23296580 -126220457 + AT_rich Low_complexity Low_complexity 1 34 0 5 762 713 270 59 49 chr6 23296819 23297107 -126219930 - B4A SINE B4 0 292 2 5 762 22 0 0 0 chr6 23297637 23297659 -126219378 + AT_rich Low_complexity Low_complexity 1 22 0 5 762 23 68 0 0 chr6 23297697 23297741 -126219296 + AT_rich Low_complexity Low_complexity 1 44 0 5 762 702 133 0 0 chr6 23298035 23298148 -126218889 + (TA)n Simple_repeat Simple_repeat 1 113 0 5 762 565 338 7 0 chr6 23298399 23298547 -126218490 - B3A SINE B2 -47 151 3 5 762 758 167 29 29 chr6 23299022 23299158 -126217879 - B1_Mur4 SINE Alu -6 144 9 5 762 319 203 57 157 chr6 23299043 23299183 -126217854 - MT2B LTR ERVL -323 278 153 5 762 413 222 89 20 chr6 23299480 23299581 -126217456 + PB1D10 SINE Alu 8 115 -2 5 762 183 80 0 0 chr6 23299788 23299813 -126217224 + (TCCA)n Simple_repeat Simple_repeat 2 26 0 5 762 34 65 0 0 chr6 23300231 23300293 -126216744 + AT_rich Low_complexity Low_complexity 1 62 0 5 762 492 248 56 0 chr6 23300354 23300515 -126216522 + L1M2 LINE L1 4398 4567 -1576 5 762 2068 150 23 14 chr6 23300526 23300877 -126216160 + ORR1B1 LTR MaLR 41 394 0 5 762 242 275 11 0 chr6 23300882 23300973 -126216064 + L1M2 LINE L1 4572 4663 -1480 5 762 244 152 16 33 chr6 23300973 23301034 -126216003 + A-rich Low_complexity Low_complexity 1 60 0 5 762 905 290 39 90 chr6 23301035 23301172 -126215865 + L1M2 LINE L1 4654 4784 -1359 5 762 501 265 47 20 chr6 23301172 23301322 -126215715 + RSINE1 SINE B4 2 155 -10 5 762 905 290 39 90 chr6 23301322 23301831 -126215206 + L1M2 LINE L1 4785 5267 -876 5 762 228 218 56 22 chr6 23301912 23302001 -126215036 + L1M2 LINE L1 4671 4762 -1381 5 762 223 246 63 32 chr6 23302002 23302065 -126214972 + ID4_ SINE ID 10 74 -9 5 762 22 0 0 0 chr6 23302069 23302091 -126214946 + AT_rich Low_complexity Low_complexity 1 22 0 5 762 293 322 99 11 chr6 23302107 23302198 -126214839 + ID_B1 SINE B4 87 185 -39 5 762 232 196 0 19 chr6 23302323 23302375 -126214662 - Lx3B LINE L1 -4 6969 6919 5 762 1773 146 90 6 chr6 23302372 23302841 -126214196 + Lx3C LINE L1 5838 6368 -608 5 762 840 313 32 28 chr6 23303030 23303267 -126213770 + B4A SINE B4 30 269 -23 5 762 351 0 0 0 chr6 23303267 23303306 -126213731 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 762 840 313 32 28 chr6 23303306 23303318 -126213719 + B4A SINE B4 270 280 -12 5 762 22 35 0 0 chr6 23303907 23303936 -126213101 + AT_rich Low_complexity Low_complexity 1 29 0 5 762 428 0 19 0 chr6 23305260 23305312 -126211725 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 5 762 351 0 0 0 chr6 23305600 23305639 -126211398 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 762 414 0 0 0 chr6 23305639 23305684 -126211353 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 762 582 290 27 20 chr6 23306854 23307002 -126210035 - B1F SINE Alu 0 149 1 5 762 284 378 20 7 chr6 23308321 23308360 -126208677 + ID_B1 SINE B4 47 195 -24 5 762 361 234 19 96 chr6 23308349 23308453 -126208584 + MT2B LTR ERVL 160 255 -346 5 762 565 231 0 0 chr6 23308360 23308468 -126208569 + B1_Mus1 SINE Alu 9 116 -32 5 762 209 182 0 18 chr6 23308480 23308536 -126208501 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 5 762 1933 110 65 0 chr6 23308587 23308877 -126208160 + Lx2 LINE L1 6689 6997 0 5 762 459 0 0 0 chr6 23309118 23309169 -126207868 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 762 292 200 12 12 chr6 23309288 23309369 -126207668 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 5 762 374 301 0 3 chr6 23309411 23309521 -126207516 + PB1D9 SINE Alu 5 110 -10 5 762 542 273 23 23 chr6 23311254 23311430 -126205607 - MER5A DNA MER1_type -13 176 1 5 762 290 317 0 0 chr6 23311736 23311818 -126205219 - B4A SINE B4 -209 83 2 5 762 807 191 141 21 chr6 23312448 23312640 -126204397 + B3 SINE B2 2 216 0 5 762 230 345 83 0 chr6 23312825 23312909 -126204128 + RMER12 LTR ERVK 739 829 -493 5 762 575 62 12 0 chr6 23312952 23313032 -126204005 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 5 762 21 0 0 0 chr6 23313424 23313445 -126203592 + AT_rich Low_complexity Low_complexity 1 21 0 5 762 297 0 0 0 chr6 23314108 23314141 -126202896 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 762 241 333 40 0 chr6 23314315 23314390 -126202647 + Charlie1b DNA MER1_type 5 82 -441 5 762 1969 81 4 0 chr6 23314423 23314684 -126202353 - L1_Mus1 LINE L1 -1 6566 6305 5 762 250 154 0 0 chr6 23314850 23314889 -126202148 + B2_Mm2 SINE B2 2 40 -155 5 762 33828 35 0 0 chr6 23314889 23320305 -126196732 + L1Md_T LINE L1 77 5589 -297 5 762 8914 10 0 0 chr6 23320305 23321301 -126195736 + L1Md_T LINE L1 5590 6585 0 5 762 1091 104 18 30 chr6 23321301 23321469 -126195568 + B2_Mm2 SINE B2 28 193 -2 5 762 386 337 66 6 chr6 23321514 23321696 -126195341 + Lx8 LINE L1 7079 7271 -202 5 762 1151 82 112 0 chr6 23322067 23322237 -126194800 - B2_Mm2 SINE B2 -6 189 1 5 762 8239 55 1 0 chr6 23323059 23324138 -126192899 - L1_Mm LINE L1 -65 5818 4739 5 762 3833 72 26 26 chr6 23324138 23324667 -126192370 + L1Md_F2 LINE L1 6042 6570 -12 5 762 315 0 0 0 chr6 23325807 23325842 -126191195 + (T)n Simple_repeat Simple_repeat 1 35 0 5 762 184 173 19 37 chr6 23325910 23325964 -126191073 + (TATG)n Simple_repeat Simple_repeat 4 56 0 5 762 230 297 17 97 chr6 23327393 23327544 -126189493 - L2a LINE L2 0 3426 3239 5 762 22 35 0 0 chr6 23328143 23328172 -126188865 + AT_rich Low_complexity Low_complexity 1 29 0 5 762 768 119 0 0 chr6 23328522 23328640 -126188397 + (TA)n Simple_repeat Simple_repeat 2 119 0 5 762 180 111 0 0 chr6 23328642 23328669 -126188368 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 762 429 303 54 27 chr6 23328679 23328828 -126188209 - RSINE1 SINE B4 -8 157 5 5 762 216 0 0 0 chr6 23329359 23329383 -126187654 + (A)n Simple_repeat Simple_repeat 1 24 0 5 762 251 214 14 0 chr6 23329436 23329506 -126187531 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 95 989 288 108 43 chr6 23329919 23330966 -126186071 + L1MA10 LINE L1 5168 6296 -38 5 763 22 70 0 0 chr6 23331983 23332026 -126185011 + AT_rich Low_complexity Low_complexity 1 43 0 5 763 266 0 0 29 chr6 23334194 23334229 -126182808 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 5 763 22 0 0 0 chr6 23334279 23334301 -126182736 + AT_rich Low_complexity Low_complexity 1 22 0 5 763 223 28 27 27 chr6 23335129 23335166 -126181871 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 763 375 23 0 0 chr6 23335183 23335227 -126181810 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 763 236 282 25 13 chr6 23337631 23337710 -126179327 - ID4 SINE ID -2 81 2 5 763 22 0 0 0 chr6 23338978 23339000 -126178037 + AT_rich Low_complexity Low_complexity 1 22 0 5 763 499 385 55 35 chr6 23339103 23339536 -126177501 - HAL1 LINE L1 -1356 1151 710 5 763 510 86 0 0 chr6 23340151 23340221 -126176816 - L1_Mus3 LINE L1 -102 6536 6467 5 763 181 57 0 54 chr6 23340487 23340524 -126176513 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 5 763 285 29 0 0 chr6 23341930 23341964 -126175073 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 763 249 260 169 0 chr6 23341994 23342071 -126174966 - ID_B1 SINE B4 -7 217 128 5 763 225 0 0 0 chr6 23343267 23343292 -126173745 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 763 357 82 0 0 chr6 23343353 23343402 -126173635 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 5 763 612 124 171 0 chr6 23343408 23343513 -126173524 - B2_Mm2 SINE B2 -72 123 1 5 763 1111 204 34 0 chr6 23343629 23343835 -126173202 - B3 SINE B2 -3 213 1 5 763 1073 54 0 33 chr6 23344622 23344775 -126172262 - B1_Mus1 SINE Alu 0 148 1 5 763 819 119 48 48 chr6 23345236 23345404 -126171633 - L1_Mus3 LINE L1 -22 6616 6449 5 763 324 0 0 0 chr6 23345611 23345647 -126171390 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 763 347 174 0 28 chr6 23345913 23345984 -126171053 - RMER15 LTR ERVL -145 430 362 5 763 606 231 20 53 chr6 23345997 23346148 -126170889 - RMER15 LTR ERVL -401 174 29 5 763 239 211 53 0 chr6 23346173 23346230 -126170807 - RMER15 LTR ERVL -515 60 1 5 763 717 179 24 132 chr6 23346342 23346554 -126170483 + B2_Mm2 SINE B2 2 190 -5 5 763 351 0 0 0 chr6 23346856 23346895 -126170142 + (CAAAAA)n Simple_repeat Simple_repeat 1 39 0 5 763 354 151 35 0 chr6 23348043 23348129 -126168908 - Lx9 LINE L1 -6 7638 7550 5 763 5359 80 25 3 chr6 23348415 23349608 -126167429 - Lx3_Mus LINE L1 -601 6408 5199 5 763 3791 104 48 27 chr6 23349608 23350238 -126166799 + Lx3_Mus LINE L1 6367 7009 0 5 763 201 94 0 0 chr6 23350307 23350339 -126166698 + (CAAT)n Simple_repeat Simple_repeat 3 34 0 5 763 316 339 110 39 chr6 23350561 23350942 -126166095 - L1ME4a LINE L1 -267 5857 5450 5 763 992 269 73 18 chr6 23351757 23352070 -126164967 - MTE2b LTR MaLR -7 372 38 5 763 285 281 47 8 chr6 23352438 23352567 -126164470 + HAL1 LINE L1 1513 1646 -861 5 763 25 31 0 0 chr6 23352668 23352700 -126164337 + AT_rich Low_complexity Low_complexity 1 32 0 5 763 225 0 0 0 chr6 23353030 23353055 -126163982 + (A)n Simple_repeat Simple_repeat 1 25 0 5 763 1136 99 29 17 chr6 23353092 23353266 -126163771 + B2_Mm2 SINE B2 1 176 -19 5 763 314 265 36 0 chr6 23353395 23353478 -126163559 + L1M5 LINE L1 2426 2511 -3635 5 763 245 344 0 0 chr6 23354253 23354343 -126162694 + L1MC4a LINE L1 6487 6576 -1306 6 763 229 289 26 0 chr6 23354842 23354918 -126162119 + MER46C DNA MER2_type 260 337 -1 6 763 221 0 0 33 chr6 23355038 23355068 -126161969 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 763 269 267 154 11 chr6 23355091 23355182 -126161855 - MIRc SINE MIR -142 126 23 6 763 433 280 91 7 chr6 23355520 23355676 -126161361 - ID_B1 SINE B4 -53 239 73 6 763 2378 56 0 0 chr6 23356675 23356980 -126160057 - L1Md_A LINE L1 0 6582 6278 6 763 200 139 0 44 chr6 23358290 23358335 -126158702 + A-rich Low_complexity Low_complexity 2 44 0 6 763 753 12 0 0 chr6 23358825 23358911 -126158126 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 6 763 887 134 76 6 chr6 23358912 23359070 -126157967 - Lx LINE L1 -12 6642 6474 6 763 288 0 0 0 chr6 23359617 23359649 -126157388 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 763 22 35 0 0 chr6 23359767 23359796 -126157241 + AT_rich Low_complexity Low_complexity 1 29 0 6 763 200 97 32 0 chr6 23360010 23360041 -126156996 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 6 763 553 243 13 60 chr6 23361968 23362117 -126154920 - B1_Mur2 SINE Alu -7 142 1 6 763 568 206 43 22 chr6 23363577 23363716 -126153321 + B1_Mur1 SINE Alu 1 142 -7 6 763 21 36 0 0 chr6 23365317 23365345 -126151692 + AT_rich Low_complexity Low_complexity 1 28 0 6 763 677 297 7 0 chr6 23365552 23365697 -126151340 + RSINE1 SINE B4 3 148 -17 6 763 270 0 0 0 chr6 23365728 23365758 -126151279 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 763 297 287 11 65 chr6 23365986 23366172 -126150865 + (CACAG)n Simple_repeat Simple_repeat 5 180 0 6 763 22 0 0 0 chr6 23366936 23366958 -126150079 + AT_rich Low_complexity Low_complexity 1 22 0 6 763 1968 73 0 68 chr6 23367484 23367776 -126149261 - L1_Mus2 LINE L1 0 6566 6295 6 763 4185 46 0 0 chr6 23367776 23368277 -126148760 + L1_Mus2 LINE L1 5791 6291 -275 6 763 225 0 0 0 chr6 23368466 23368491 -126148546 + (T)n Simple_repeat Simple_repeat 1 25 0 6 763 180 0 0 0 chr6 23368906 23368926 -126148111 + (A)n Simple_repeat Simple_repeat 1 20 0 6 763 486 279 42 32 chr6 23368935 23369124 -126147913 - B3A SINE B2 -6 192 2 6 763 27 49 0 0 chr6 23369442 23369483 -126147554 + AT_rich Low_complexity Low_complexity 1 41 0 6 763 205 205 0 0 chr6 23369959 23369998 -126147039 + A-rich Low_complexity Low_complexity 1 39 0 6 763 24 32 0 0 chr6 23370254 23370285 -126146752 + AT_rich Low_complexity Low_complexity 1 31 0 6 763 247 328 95 25 chr6 23370865 23371106 -126145931 + L1MEc LINE L1 133 390 -6010 6 763 491 164 18 9 chr6 23371113 23371224 -126145813 - RLTR13D6 LTR ERVK 0 902 791 6 763 3042 156 53 36 chr6 23371261 23371846 -126145191 + ETnERV2-int LTR ERVK 28 622 -6784 6 763 361 178 0 14 chr6 23371853 23371927 -126145110 + RLTR13D6 LTR ERVK 830 902 0 6 763 348 24 0 0 chr6 23372142 23372183 -126144854 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 763 1156 276 36 17 chr6 23373102 23373404 -126143633 + MTE2b LTR MaLR 8 315 -64 6 763 357 176 13 26 chr6 23373427 23373503 -126143534 + MTE2b LTR MaLR 305 379 0 6 763 306 305 102 18 chr6 23373635 23373802 -126143235 + L1MEc LINE L1 5310 5490 -829 6 763 1629 283 61 56 chr6 23373870 23374205 -126142832 + Lx8 LINE L1 6241 6566 -907 6 763 351 0 0 0 chr6 23374205 23374244 -126142793 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 763 1629 283 61 56 chr6 23374244 23374601 -126142436 + Lx8 LINE L1 6567 6936 -537 6 763 27 29 0 0 chr6 23375040 23375074 -126141963 + AT_rich Low_complexity Low_complexity 1 34 0 6 763 387 89 0 0 chr6 23375779 23375835 -126141202 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 763 324 0 0 0 chr6 23376529 23376565 -126140472 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 763 261 200 15 0 chr6 23376898 23376963 -126140074 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 763 580 194 39 0 chr6 23378343 23378446 -126138591 + B1_Mur1 SINE Alu 36 142 -7 6 763 1093 104 86 0 chr6 23378712 23378875 -126138162 - B2_Mm1t SINE B2 -14 179 3 6 763 556 79 0 122 chr6 23378973 23379088 -126137949 + L1_Mus2 LINE L1 6465 6565 -1 6 763 23 54 0 0 chr6 23379254 23379291 -126137746 + AT_rich Low_complexity Low_complexity 1 37 0 6 763 21 0 0 0 chr6 23380648 23380669 -126136368 + AT_rich Low_complexity Low_complexity 1 21 0 6 763 647 253 74 11 chr6 23381090 23381266 -126135771 - B3A SINE B2 -3 195 9 6 763 462 281 204 12 chr6 23383042 23383366 -126133671 - Lx9 LINE L1 -29 7615 7230 6 763 456 111 0 0 chr6 23383536 23383608 -126133429 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 763 581 272 88 0 chr6 23383616 23383752 -126133285 - B3A SINE B2 -47 151 4 6 763 423 271 0 10 chr6 23384263 23384360 -126132677 + PB1D10 SINE Alu 19 114 -3 6 763 194 0 0 37 chr6 23384388 23384415 -126132622 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 763 324 0 0 0 chr6 23384650 23384686 -126132351 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 6 763 387 0 0 0 chr6 23384843 23384886 -126132151 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 763 268 236 0 35 chr6 23384901 23384958 -126132079 + PB1D7 SINE Alu 65 119 -1 6 763 318 148 0 0 chr6 23385421 23385475 -126131562 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 763 23 0 0 0 chr6 23386903 23386926 -126130111 + AT_rich Low_complexity Low_complexity 1 23 0 6 763 696 24 0 0 chr6 23386998 23387080 -126129957 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 763 21 57 0 0 chr6 23387802 23387837 -126129200 + AT_rich Low_complexity Low_complexity 1 35 0 6 763 1549 77 10 0 chr6 23387838 23388046 -126128991 - L1_Mus1 LINE L1 -2 6565 6356 6 763 1122 51 14 0 chr6 23388770 23388908 -126128129 - B1_Mm SINE Alu -6 141 2 6 763 363 374 31 31 chr6 23390398 23390624 -126126413 + MIRb SINE MIR 26 251 -17 6 763 183 100 0 0 chr6 23391803 23391833 -126125204 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 6 763 188 67 33 0 chr6 23392817 23392847 -126124190 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 763 180 0 0 0 chr6 23393452 23393472 -126123565 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 6 763 218 297 71 63 chr6 23394453 23394579 -126122458 + MIR3 SINE MIR 78 204 -4 6 763 657 291 69 15 chr6 23394815 23395017 -126122020 - B4 SINE B4 -12 280 68 6 763 21 36 0 0 chr6 23397099 23397127 -126119910 + AT_rich Low_complexity Low_complexity 1 28 0 6 763 306 335 101 29 chr6 23397483 23397692 -126119345 - L1ME1 LINE L1 -177 6002 5779 6 763 368 309 48 24 chr6 23397694 23397903 -126119134 - L1MC LINE L1 -605 5739 5526 6 763 185 65 32 0 chr6 23399868 23399899 -126117138 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 763 22 35 0 0 chr6 23400020 23400049 -126116988 + AT_rich Low_complexity Low_complexity 1 29 0 6 763 468 0 0 0 chr6 23400109 23400161 -126116876 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 763 415 326 57 0 chr6 23402349 23402490 -126114547 + B1F SINE Alu 1 149 0 6 763 190 250 45 0 chr6 23404634 23404678 -126112359 + MIRm SINE MIR 175 220 -56 6 763 180 0 0 0 chr6 23404825 23404845 -126112192 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 6 763 806 242 28 19 chr6 23405880 23406091 -126110946 + B3 SINE B2 1 213 -3 6 763 402 178 146 19 chr6 23406142 23406245 -126110792 + B1F SINE Alu 32 147 -2 6 763 574 268 0 0 chr6 23406307 23406445 -126110592 + B1_Mur2 SINE Alu 5 142 -7 6 763 243 349 24 0 chr6 23406576 23406659 -126110378 + RSINE1 SINE B4 5 89 -76 6 763 387 89 0 0 chr6 23406705 23406761 -126110276 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 763 1059 192 37 42 chr6 23406881 23406910 -126110127 - B3 SINE B2 0 216 195 6 763 1403 93 5 0 chr6 23406910 23407103 -126109934 - B2_Mm2 SINE B2 0 195 2 6 763 1059 192 37 42 chr6 23407103 23407290 -126109747 - B3 SINE B2 -22 194 1 6 763 453 326 0 23 chr6 23408859 23409395 -126107642 + (CTGTG)n Simple_repeat Simple_repeat 1 523 0 6 763 453 320 0 23 chr6 23409435 23409971 -126107066 + (CTGTG)n Simple_repeat Simple_repeat 1 523 0 6 763 286 343 0 23 chr6 23409867 23410043 -126106994 + (CTATG)n Simple_repeat Simple_repeat 5 176 0 6 763 437 324 0 22 chr6 23410011 23410655 -126106382 + (CTGTG)n Simple_repeat Simple_repeat 1 629 0 6 763 243 0 0 0 chr6 23411791 23411818 -126105219 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 763 2998 38 41 0 chr6 23411955 23412324 -126104713 + L1Md_F2 LINE L1 6199 6582 0 6 763 379 277 49 32 chr6 23413728 23413851 -126103186 + ID_B1 SINE B4 90 214 -10 6 763 195 42 0 0 chr6 23413852 23413876 -126103161 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 6 763 323 310 177 11 chr6 23415785 23415971 -126101066 + MIRb SINE MIR 5 221 -47 6 763 957 250 19 0 chr6 23417148 23417356 -126099681 - B3 SINE B2 0 216 5 6 763 323 344 43 62 chr6 23418678 23418839 -126098198 + RSINE1 SINE B4 6 163 -2 6 763 217 342 88 36 chr6 23418923 23419117 -126097920 - MIR SINE MIR -26 236 33 6 763 384 302 82 41 chr6 23419177 23419470 -126097567 - Helitron1Na_Mam RC Helitron -58 1004 700 6 763 233 362 37 6 chr6 23420643 23420807 -126096230 + L1M5 LINE L1 5581 5749 -491 6 763 302 269 0 7 chr6 23420823 23420958 -126096079 + (TA)n Simple_repeat Simple_repeat 2 135 0 6 763 408 40 0 0 chr6 23421538 23421588 -126095449 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 763 706 281 92 9 chr6 23422328 23422590 -126094447 + Lx5 LINE L1 6192 6693 -767 6 763 22 35 0 0 chr6 23422595 23422624 -126094413 + AT_rich Low_complexity Low_complexity 1 29 0 6 763 486 149 28 28 chr6 23422624 23422769 -126094268 + A-rich Low_complexity Low_complexity 3 147 0 6 763 578 278 28 6 chr6 23422778 23422955 -126094082 + Lx5 LINE L1 6460 6640 -410 6 763 262 317 97 58 chr6 23422959 23423113 -126093924 - B4A SINE B4 -104 188 29 6 763 453 76 0 0 chr6 23423161 23423227 -126093810 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 763 336 276 47 87 chr6 23423262 23423389 -126093648 - RSINE1 SINE B4 -42 123 2 7 763 1405 50 45 0 chr6 23423523 23423702 -126093335 + B2_Mm2 SINE B2 2 188 -7 7 763 21 0 0 0 chr6 23424049 23424070 -126092967 + AT_rich Low_complexity Low_complexity 1 21 0 7 763 39513 7 0 1 chr6 23424328 23431320 -126085717 - L1Md_A LINE L1 0 6582 1 7 763 574 312 0 21 chr6 23431360 23431553 -126085484 + Lx8 LINE L1 6602 6790 -683 7 763 3544 31 0 0 chr6 23432054 23432469 -126084568 + L1Md_T LINE L1 6168 6582 0 7 763 301 162 0 0 chr6 23432557 23432625 -126084412 - L1Md_F2 LINE L1 -4 6578 6511 7 763 18676 89 9 2 chr6 23432625 23435763 -126081274 - L1_Mus2 LINE L1 -333 6233 3072 7 763 1210 193 32 23 chr6 23435752 23435830 -126081207 - L1_Mus2 LINE L1 -5581 1035 957 7 763 1325 96 27 0 chr6 23435830 23436018 -126081019 - B2_Mm2 SINE B2 -1 194 2 7 763 1210 193 32 23 chr6 23436018 23436247 -126080790 - L1_Mus2 LINE L1 -5660 956 726 7 763 355 274 89 0 chr6 23436226 23436372 -126080665 - L1_Mus2 LINE L1 -5783 833 675 7 763 444 213 55 140 chr6 23436407 23436630 -126080407 - L1VL1 LINE L1 -6045 377 56 7 763 289 297 88 0 chr6 23437103 23437194 -126079843 - MTEa LTR MaLR 0 379 281 7 763 29 28 0 0 chr6 23437942 23437978 -126079059 + AT_rich Low_complexity Low_complexity 1 36 0 7 763 486 197 0 17 chr6 23438293 23438412 -126078625 + Lx4A LINE L1 6941 7057 -1 7 763 248 315 116 9 chr6 23439184 23439296 -126077741 - MIR3 SINE MIR -49 159 36 7 763 23 54 0 0 chr6 23439997 23440034 -126077003 + AT_rich Low_complexity Low_complexity 1 37 0 7 763 324 0 0 0 chr6 23440285 23440321 -126076716 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 763 3662 55 0 13 chr6 23441050 23441508 -126075529 - L1_Mus1 LINE L1 0 6567 6116 7 763 1957 43 4 27 chr6 23441515 23441778 -126075259 - L1Md_F2 LINE L1 -2 6580 6324 7 763 545 241 43 36 chr6 23442680 23442818 -126074219 + B4 SINE B4 85 223 -69 7 763 473 81 0 26 chr6 23442840 23442916 -126074121 + (CCAA)n Simple_repeat Simple_repeat 2 75 0 7 763 203 113 54 54 chr6 23442937 23442993 -126074044 + (CAAAC)n Simple_repeat Simple_repeat 5 60 0 7 763 2352 91 44 6 chr6 23444165 23444509 -126072528 - Lx LINE L1 -13 6641 6285 7 763 307 157 0 0 chr6 23444510 23444561 -126072476 + L1_Mus4 LINE L1 6226 6276 -360 7 763 200 313 29 29 chr6 23445019 23445121 -126071916 + L2c LINE L2 3038 3139 -248 7 763 893 159 28 0 chr6 23445539 23445684 -126071353 + B1_Mur3 SINE Alu 1 149 0 7 763 313 309 18 35 chr6 23446333 23446447 -126070590 + RLTR14 LTR ERV1 271 382 0 7 763 342 0 0 0 chr6 23446608 23446646 -126070391 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 7 763 249 57 0 0 chr6 23447007 23447042 -126069995 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 763 233 364 0 0 chr6 23448827 23448904 -126068133 + ID4_ SINE ID 5 81 -2 7 763 538 267 7 7 chr6 23448927 23449074 -126067963 + B1F2 SINE Alu 1 147 -2 7 763 389 352 35 30 chr6 23449429 23449628 -126067409 + MLT1J-int LTR MaLR 900 1099 -288 7 763 3909 116 38 10 chr6 23449629 23450229 -126066808 - Lx LINE L1 0 6654 6038 7 763 345 24 0 0 chr6 23451632 23451674 -126065363 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 763 497 259 253 0 chr6 23452088 23452262 -126064775 - ID_B1 SINE B4 -6 218 1 7 763 598 281 71 20 chr6 23452335 23452531 -126064506 + B3 SINE B2 1 206 -10 7 763 284 311 14 0 chr6 23453957 23454031 -126063006 + ID4_ SINE ID 1 75 -8 7 763 348 24 0 0 chr6 23454387 23454428 -126062609 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 763 24 53 0 0 chr6 23454477 23454515 -126062522 + AT_rich Low_complexity Low_complexity 1 38 0 7 763 408 298 83 0 chr6 23454529 23454734 -126062303 + L1MA7 LINE L1 5788 6009 -282 7 763 251 104 21 0 chr6 23454736 23454784 -126062253 + (CAGGA)n Simple_repeat Simple_repeat 1 49 0 7 763 510 208 25 0 chr6 23454819 23454939 -126062098 + Lx9 LINE L1 7353 7475 -169 7 763 365 58 0 19 chr6 23454952 23455005 -126062032 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 763 29 28 0 0 chr6 23455050 23455086 -126061951 + AT_rich Low_complexity Low_complexity 1 36 0 7 763 524 261 17 34 chr6 23455122 23455241 -126061796 - PB1D9 SINE Alu -1 119 3 7 763 609 40 0 0 chr6 23455399 23455473 -126061564 + L1Md_F2 LINE L1 5513 5586 -297 7 763 8096 50 1 0 chr6 23455473 23456456 -126060581 + L1Md_F2 LINE L1 5587 6570 -12 7 763 743 291 100 33 chr6 23456756 23457026 -126060011 - B4A SINE B4 0 292 5 7 763 1013 284 90 25 chr6 23457274 23457508 -126059529 - MTD LTR MaLR -39 380 120 7 763 207 0 0 0 chr6 23457508 23457531 -126059506 + (CAA)n Simple_repeat Simple_repeat 1 23 0 7 763 1013 284 90 25 chr6 23457531 23457653 -126059384 - MTD LTR MaLR -300 119 1 7 763 555 236 120 36 chr6 23457908 23458075 -126058962 - B3A SINE B2 -16 182 2 7 763 250 159 0 45 chr6 23459415 23459481 -126057556 + GA-rich Low_complexity Low_complexity 5 67 0 7 763 369 0 0 0 chr6 23459978 23460019 -126057018 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 763 529 216 24 0 chr6 23460021 23460146 -126056891 - L1MA8 LINE L1 -386 5905 5778 7 763 591 211 120 0 chr6 23460222 23460307 -126056730 + Lx7 LINE L1 6804 6902 -794 7 763 306 107 0 0 chr6 23460307 23460363 -126056674 + (CAGA)n Simple_repeat Simple_repeat 2 57 0 7 763 591 211 120 0 chr6 23460363 23460419 -126056618 + Lx7 LINE L1 6903 6961 -735 7 763 2085 206 92 14 chr6 23460544 23461032 -126056005 + RLTR11A2 LTR ERVK 2 527 0 7 95 33667 35 1 0 chr6 23461279 23466910 -126050127 + L1Md_T LINE L1 1 5589 -297 7 764 9018 6 0 0 chr6 23466910 23467906 -126049131 + L1Md_T LINE L1 5590 6585 0 7 764 1281 299 57 29 chr6 23468365 23468889 -126048148 + Lx8 LINE L1 6790 7328 -145 7 764 382 20 20 0 chr6 23469745 23469795 -126047242 + 5S rRNA rRNA 1 51 -70 7 764 2963 177 78 39 chr6 23470520 23470795 -126046242 + RMER6C LTR ERVK 1 322 -368 7 764 644 0 0 13 chr6 23470795 23470872 -126046165 + (CAGAG)n Simple_repeat Simple_repeat 1 76 0 7 764 2963 177 78 39 chr6 23470872 23471260 -126045777 + RMER6C LTR ERVK 323 690 0 7 764 282 66 16 47 chr6 23471953 23472017 -126045020 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 7 764 186 43 0 0 chr6 23472225 23472248 -126044789 + (T)n Simple_repeat Simple_repeat 1 23 0 7 764 1243 48 0 0 chr6 23472252 23472398 -126044639 - B1_Mus2 SINE Alu -1 146 1 7 764 268 270 67 13 chr6 23472530 23472605 -126044432 + L4 LINE RTE 1097 1175 -854 7 764 804 301 31 0 chr6 23473029 23473225 -126043812 - B3 SINE B2 -13 203 2 7 764 297 0 0 0 chr6 23473742 23473775 -126043262 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 764 342 0 0 0 chr6 23473775 23473812 -126043225 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 764 361 291 108 25 chr6 23474660 23474864 -126042173 - L1MD LINE L1 -2341 5654 5434 7 764 259 62 0 77 chr6 23475120 23475172 -126041865 + (GGGAA)n Simple_repeat Simple_repeat 1 48 0 7 764 225 366 0 0 chr6 23475173 23475345 -126041692 + A-rich Low_complexity Low_complexity 1 172 0 7 764 669 165 69 0 chr6 23475343 23475677 -126041360 + GA-rich Low_complexity Low_complexity 1 357 0 7 764 234 164 0 0 chr6 23475682 23475737 -126041300 + (CAGG)n Simple_repeat Simple_repeat 2 56 0 7 764 270 322 21 11 chr6 23475858 23475952 -126041085 - MER5A DNA MER1_type -64 125 31 7 764 421 323 121 30 chr6 23476437 23476635 -126040402 + MER20 DNA MER1_type 2 217 -2 7 764 316 331 60 96 chr6 23477779 23477946 -126039091 - RSINE1 SINE B4 0 165 5 7 764 34 24 0 0 chr6 23479463 23479504 -126037533 + AT_rich Low_complexity Low_complexity 1 41 0 7 764 639 313 5 5 chr6 23480079 23480275 -126036762 + Lx8 LINE L1 6267 6462 -1011 7 764 396 0 0 0 chr6 23480281 23480325 -126036712 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 7 764 2325 231 117 9 chr6 23480348 23480993 -126036044 - RMER1B Other Other -24 1042 9 7 764 5108 128 19 1 chr6 23481462 23482237 -126034800 + Lx4A LINE L1 6270 7058 0 7 764 1179 68 0 0 chr6 23482775 23482922 -126034115 - B1_Mus1 SINE Alu 0 148 2 7 764 470 273 28 35 chr6 23482960 23483104 -126033933 + RSINE1 SINE B4 4 146 -19 7 764 775 217 90 15 chr6 23483241 23483442 -126033595 + B3 SINE B2 1 216 0 7 764 6415 44 10 2 chr6 23484251 23485054 -126031983 + L1Md_F2 LINE L1 5761 6569 -13 7 764 24 53 0 0 chr6 23485329 23485367 -126031670 + AT_rich Low_complexity Low_complexity 1 38 0 7 764 694 299 103 28 chr6 23485384 23485704 -126031333 + Lx8 LINE L1 6781 7124 -349 7 764 251 176 39 0 chr6 23486125 23486176 -126030861 + B3A SINE B2 3 55 -143 7 764 654 286 63 18 chr6 23486185 23486406 -126030631 + ORR1D1 LTR MaLR 1 231 -139 7 764 261 293 166 40 chr6 23486938 23487185 -126029852 + MTEb LTR MaLR 84 365 -14 7 764 10545 185 83 13 chr6 23488082 23489058 -126027979 + Lx5 LINE L1 888 1977 -3900 7 764 495 0 0 0 chr6 23489058 23489113 -126027924 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 764 297 0 0 0 chr6 23489113 23489145 -126027892 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 764 10545 173 75 12 chr6 23489145 23489244 -126027793 + Lx5 LINE L1 1978 2147 -3730 7 764 2111 93 0 19 chr6 23489244 23489552 -126027485 + L1Md_F2 LINE L1 6280 6581 -1 7 764 10545 173 75 12 chr6 23489552 23491207 -126025830 + Lx5 LINE L1 2148 3858 -2019 7 764 6252 173 71 8 chr6 23491188 23493077 -126023960 + Lx5 LINE L1 4856 6872 -178 7 764 29 0 0 0 chr6 23493163 23493192 -126023845 + AT_rich Low_complexity Low_complexity 1 29 0 7 764 327 118 14 3 chr6 23493453 23493506 -126023531 - MTD LTR MaLR 0 419 351 7 764 4387 64 3 3 chr6 23493528 23494094 -126022943 + L1_Mus1 LINE L1 6002 6567 0 7 764 826 259 27 36 chr6 23494132 23494425 -126022612 - MTD LTR MaLR -28 391 25 7 764 513 277 52 168 chr6 23494649 23495096 -126021941 + RLTR12B LTR ERVK 100 494 -34 7 764 302 161 8 0 chr6 23495214 23495302 -126021735 - RMER6-int LTR ERVK -3019 158 8 7 764 561 182 10 0 chr6 23495331 23495430 -126021607 - RMER6A LTR ERVK 0 756 657 7 764 305 264 28 0 chr6 23495430 23495502 -126021535 - Lx8 LINE L1 -247 7226 7153 7 764 987 308 40 5 chr6 23495522 23495927 -126021110 - Lx8 LINE L1 -380 7093 6675 7 764 26 50 0 0 chr6 23495973 23496013 -126021024 + AT_rich Low_complexity Low_complexity 1 40 0 8 764 295 332 57 82 chr6 23496274 23496553 -126020484 + ORR1E LTR MaLR 88 359 0 8 764 414 171 98 9 chr6 23498680 23498792 -126018245 - Lx9 LINE L1 -7 7637 7516 8 764 920 62 15 44 chr6 23498821 23498956 -126018081 + B1_Mus1 SINE Alu 17 147 -1 8 764 21 57 0 0 chr6 23498956 23498991 -126018046 + AT_rich Low_complexity Low_complexity 1 35 0 8 764 1110 160 186 23 chr6 23500337 23500638 -126016399 + Lx5 LINE L1 1520 1869 -4011 1 764 6030 197 62 18 chr6 23500629 23502844 -126014193 + Lx5 LINE L1 4712 7039 -11 1 764 475 201 6 6 chr6 23503305 23503480 -126013557 + (CCA)n Simple_repeat Simple_repeat 2 176 0 2 764 244 276 21 103 chr6 23504166 23504263 -126012774 - RLTR24 LTR ERV1 -111 418 330 3 764 259 328 22 37 chr6 23504365 23504501 -126012536 - RLTR24 LTR ERV1 -395 134 1 3 764 19188 18 0 0 chr6 23504687 23507675 -126009362 - L1Md_T LINE L1 0 6582 3595 4 764 33743 46 0 3 chr6 23507677 23512950 -126004087 + L1Md_T LINE L1 238 5589 -297 5 764 8491 32 0 0 chr6 23512950 23513945 -126003092 + L1Md_T LINE L1 5590 6584 -1 5 764 8324 27 1 0 chr6 23513945 23514994 -126002043 - L1Md_T LINE L1 -2279 3604 2555 4 764 401 316 22 15 chr6 23515883 23516018 -126001019 - ID_B1 SINE B4 -7 217 82 6 764 1054 257 45 28 chr6 23516220 23516523 -126000514 - MTD LTR MaLR -104 296 7 7 764 585 40 0 0 chr6 23517018 23517094 -125999943 + (TG)n Simple_repeat Simple_repeat 2 77 0 8 764 23 0 0 0 chr6 23518409 23518432 -125998605 + AT_rich Low_complexity Low_complexity 1 23 0 9 764 27 29 0 0 chr6 23518461 23518495 -125998542 + AT_rich Low_complexity Low_complexity 1 34 0 1 764 24 53 0 0 chr6 23520292 23520330 -125996707 + AT_rich Low_complexity Low_complexity 1 38 0 1 764 621 76 0 0 chr6 23520839 23520931 -125996106 + (GA)n Simple_repeat Simple_repeat 1 92 0 1 764 1246 58 0 8 chr6 23520938 23521181 -125995856 + (GAA)n Simple_repeat Simple_repeat 1 241 0 1 764 333 0 0 0 chr6 23521181 23521218 -125995819 + (CAG)n Simple_repeat Simple_repeat 1 37 0 1 764 247 228 34 34 chr6 23521220 23521279 -125995758 - B3A SINE B2 -139 59 1 1 764 873 261 75 19 chr6 23521482 23521748 -125995289 + B4 SINE B4 2 282 -10 1 764 256 248 114 53 chr6 23522298 23522430 -125994607 + MLT1A1 LTR MaLR 247 386 -22 1 764 222 192 0 0 chr6 23522968 23523020 -125994017 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 764 356 294 62 20 chr6 23523136 23523282 -125993755 - MIRb SINE MIR -103 165 14 1 764 789 329 130 49 chr6 23524094 23524986 -125992051 - Charlie2b DNA MER1_type -43 2739 1776 2 764 380 299 78 84 chr6 23524977 23525321 -125991716 - Charlie2b DNA MER1_type -2452 330 3 2 764 508 163 9 37 chr6 23525510 23525618 -125991419 - Lx9 LINE L1 -250 7394 7290 2 764 1282 194 52 17 chr6 23525621 23525909 -125991128 - Lx3C LINE L1 -317 6659 6362 2 764 488 233 54 0 chr6 23525927 23526056 -125990981 - Lx9 LINE L1 -355 7289 7154 2 764 1037 179 89 6 chr6 23526408 23526657 -125990380 + RLTR20A2 LTR ERVK 1 275 -259 2 764 1568 199 40 35 chr6 23526662 23527344 -125989693 + RMER19B LTR ERVK 56 890 -12 2 764 262 366 31 13 chr6 23528183 23528281 -125988756 - PB1D10 SINE Alu -17 100 6 2 764 1372 268 65 58 chr6 23530400 23530796 -125986241 + Lx8 LINE L1 6058 6433 -1040 2 764 769 168 306 0 chr6 23530796 23530969 -125986068 + URR1A DNA MER1_type 1 226 0 2 764 1372 261 70 54 chr6 23530969 23531165 -125985872 + Lx8 LINE L1 6434 6644 -829 2 764 297 109 0 0 chr6 23531226 23531272 -125985765 + (GGA)n Simple_repeat Simple_repeat 1 46 0 2 764 22 35 0 0 chr6 23531337 23531366 -125985671 + AT_rich Low_complexity Low_complexity 1 29 0 2 764 229 279 15 0 chr6 23531513 23531581 -125985456 + L1M3 LINE L1 5494 5562 -627 3 764 301 248 70 108 chr6 23531749 23531907 -125985130 + L1MB8 LINE L1 5817 5968 -210 3 764 22 35 0 0 chr6 23533155 23533184 -125983853 + AT_rich Low_complexity Low_complexity 1 29 0 3 764 694 244 0 66 chr6 23533528 23533725 -125983312 + Lx8 LINE L1 7143 7326 -147 2 764 255 209 186 0 chr6 23533685 23533771 -125983266 - L1MC4 LINE L1 -1282 6760 6659 3 764 481 167 17 17 chr6 23533783 23533899 -125983138 + (CATATA)n Simple_repeat Simple_repeat 6 121 0 3 764 362 165 8 99 chr6 23533927 23534048 -125982989 + Lx8 LINE L1 7362 7471 -2 2 764 623 246 83 81 chr6 23536267 23536545 -125980492 + B4A SINE B4 1 285 -7 3 764 3441 62 0 0 chr6 23537942 23538395 -125978642 - L1Md_F3 LINE L1 -196 6386 5934 3 764 1093 68 7 206 chr6 23538387 23538664 -125978373 + L1Md_F3 LINE L1 6358 6579 -5 3 764 24 0 0 0 chr6 23538670 23538694 -125978343 + AT_rich Low_complexity Low_complexity 1 24 0 3 764 821 249 25 5 chr6 23539145 23539347 -125977690 + B3 SINE B2 1 206 -10 3 764 10261 102 16 1 chr6 23539541 23541132 -125975905 - L1_Mm LINE L1 -2779 3104 1489 3 764 5286 67 1 16 chr6 23541137 23541837 -125975200 + L1_Mus1 LINE L1 5877 6566 -1 4 764 256 347 103 43 chr6 23541886 23542070 -125974967 - Tigger10 DNA Tigger -222 1621 1427 4 764 225 83 0 0 chr6 23542304 23542340 -125974697 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 764 559 284 318 55 chr6 23542490 23542823 -125974214 + RMER21B LTR ERV1 298 718 -124 4 764 365 259 50 33 chr6 23542836 23542956 -125974081 - B3A SINE B2 -75 123 2 4 764 318 323 134 45 chr6 23543469 23543761 -125973276 - Tigger10 DNA Tigger -995 848 531 4 764 243 279 16 0 chr6 23544322 23544383 -125972654 + MER46C DNA MER2_type 266 327 -11 4 764 728 277 0 6 chr6 23544633 23544773 -125972264 + B3 SINE B2 1 140 -76 4 764 527 112 11 0 chr6 23544773 23544862 -125972175 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 764 728 277 0 6 chr6 23544862 23544881 -125972156 + B3 SINE B2 141 159 -57 4 764 479 262 32 20 chr6 23545196 23545348 -125971689 + MLT2C2 LTR ERVL 18 163 -234 4 764 532 307 43 64 chr6 23545538 23545771 -125971266 + RMER15 LTR ERVL 332 559 -16 4 764 548 289 48 48 chr6 23545787 23545976 -125971061 + MLT2C2 LTR ERVL 153 341 -123 4 764 238 333 111 19 chr6 23546319 23546481 -125970556 - L2 LINE L2 -625 2794 2618 5 764 349 280 38 57 chr6 23546482 23546588 -125970449 + PB1D10 SINE Alu 9 112 -5 5 764 355 305 9 9 chr6 23546590 23546696 -125970341 - L2 LINE L2 -787 2632 2527 5 764 207 315 40 27 chr6 23546912 23546987 -125970050 + L2a LINE L2 3343 3418 -8 5 764 236 253 26 39 chr6 23548521 23548599 -125968438 + GA-rich Low_complexity Low_complexity 3 79 0 5 764 204 231 0 0 chr6 23548605 23548657 -125968380 + G-rich Low_complexity Low_complexity 5 56 0 5 764 5172 65 1 6 chr6 23550411 23551077 -125965960 + L1Md_F2 LINE L1 5908 6570 -12 5 764 450 324 92 27 chr6 23551392 23551576 -125965461 - B3A SINE B2 -1 197 2 5 764 24 0 0 0 chr6 23552274 23552298 -125964739 + AT_rich Low_complexity Low_complexity 1 24 0 5 764 1284 179 188 28 chr6 23552940 23553296 -125963741 - RMER16 LTR ERVK -120 413 1 5 764 238 343 30 0 chr6 23554116 23554215 -125962822 + RMER12 LTR ERVK 747 848 -474 5 764 775 271 24 28 chr6 23554345 23554558 -125962479 + B3 SINE B2 5 216 0 6 764 34192 67 2 14 chr6 23555187 23561391 -125955646 - L1Md_F2 LINE L1 0 6582 511 6 764 192 361 41 14 chr6 23561403 23561476 -125955561 - MIRb SINE MIR -154 114 40 6 764 1897 149 119 75 chr6 23561772 23562199 -125954838 + RLTR41 LTR ERV1 1 446 0 6 764 7346 67 8 2 chr6 23562416 23563560 -125953477 - L1_Mus2 LINE L1 0 6566 5418 6 764 246 304 36 48 chr6 23563560 23563643 -125953394 + MER2B DNA MER2_type 241 322 -14 6 764 364 315 98 89 chr6 23564462 23564697 -125952340 + ORR1E LTR MaLR 1 233 -137 6 764 1218 355 164 39 chr6 23564898 23565262 -125951775 + ORR1E-int LTR MaLR 60 465 -1115 6 764 447 19 0 0 chr6 23565262 23565314 -125951723 + (CCA)n Simple_repeat Simple_repeat 1 52 0 6 764 1218 359 71 60 chr6 23565314 23565705 -125951332 + ORR1E-int LTR MaLR 466 867 -713 6 764 297 0 0 0 chr6 23565705 23565738 -125951299 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 764 1218 321 77 52 chr6 23565738 23566322 -125950715 + ORR1E-int LTR MaLR 748 1527 -53 6 764 344 337 53 47 chr6 23566322 23566512 -125950525 + ORR1E LTR MaLR 1 191 -168 6 764 499 334 117 19 chr6 23567017 23567325 -125949712 - ORR1E LTR MaLR -11 348 11 7 764 218 127 92 31 chr6 23567369 23567434 -125949603 + (TTTG)n Simple_repeat Simple_repeat 2 70 0 7 764 727 267 37 37 chr6 23568175 23568389 -125948648 + B3 SINE B2 2 215 -1 7 764 269 269 176 18 chr6 23568521 23568691 -125948346 + L1_Mur3 LINE L1 4444 4668 -1472 7 764 192 77 0 0 chr6 23569184 23569210 -125947827 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 7 764 234 323 52 0 chr6 23569231 23569327 -125947710 - PB1D10 SINE Alu -15 102 2 7 764 249 57 0 0 chr6 23571579 23571614 -125945423 + (T)n Simple_repeat Simple_repeat 1 35 0 7 764 1194 68 7 0 chr6 23571614 23571761 -125945276 - B1_Mus1 SINE Alu 0 148 1 7 764 258 32 0 0 chr6 23572570 23572601 -125944436 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 764 200 97 32 0 chr6 23572610 23572641 -125944396 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 764 528 193 0 0 chr6 23572654 23572773 -125944264 + GA-rich Low_complexity Low_complexity 3 121 0 8 764 441 0 0 0 chr6 23573045 23573094 -125943943 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 764 3306 68 2 2 chr6 23573296 23573724 -125943313 + L1_Mus2 LINE L1 6139 6566 0 8 764 4279 102 5 8 chr6 23574164 23574768 -125942269 + L1_Mus4 LINE L1 6030 6631 -5 8 764 219 69 0 0 chr6 23574807 23574836 -125942201 + (CAAGA)n Simple_repeat Simple_repeat 5 33 0 8 764 368 258 302 8 chr6 23574849 23575091 -125941946 + L1MC LINE L1 2209 2521 -3625 8 764 298 307 96 25 chr6 23577099 23577256 -125939781 + MLT1A0 LTR MaLR 148 315 -50 8 764 312 143 0 0 chr6 23577730 23577786 -125939251 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 764 448 214 94 0 chr6 23577875 23577992 -125939045 - Lx4A LINE L1 -1 7057 6930 8 764 291 28 0 0 chr6 23578455 23578491 -125938546 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 8 764 221 300 50 0 chr6 23578543 23578603 -125938434 + FLAM_A SINE Alu 12 74 -221 9 764 274 358 53 35 chr6 23578552 23578665 -125938372 + ID_B1 SINE B4 103 217 -7 9 764 2576 203 49 8 chr6 23578906 23579367 -125937670 + RLTR20B3 LTR ERVK 1 481 -96 9 764 387 0 0 0 chr6 23579367 23579410 -125937627 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 764 2576 203 49 8 chr6 23579410 23579483 -125937554 + RLTR20B3 LTR ERVK 482 556 -21 9 764 523 40 0 0 chr6 23580774 23580849 -125936188 + L1Md_F2 LINE L1 6507 6581 -1 9 764 633 307 88 45 chr6 23581037 23581548 -125935489 + MT2A LTR ERVL 1 533 0 9 764 395 164 9 28 chr6 23582088 23582195 -125934842 + CT-rich Low_complexity Low_complexity 3 107 0 9 764 201 225 0 0 chr6 23582198 23582238 -125934799 + C-rich Low_complexity Low_complexity 1 40 0 9 764 464 359 52 55 chr6 23582650 23582957 -125934080 + MLT1F2 LTR MaLR 250 555 -5 9 764 2669 184 126 57 chr6 23583992 23584771 -125932266 - RMER17B LTR ERVK -121 837 5 9 764 225 206 0 56 chr6 23585433 23585541 -125931496 + (TAATG)n Simple_repeat Simple_repeat 1 102 0 1 764 195 69 0 0 chr6 23585810 23585839 -125931198 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 764 848 82 90 0 chr6 23585842 23585964 -125931073 - B1_Mus1 SINE Alu 0 148 16 1 764 303 140 0 0 chr6 23586002 23586052 -125930985 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1 764 945 109 66 6 chr6 23586057 23586223 -125930814 - L1_Mus4 LINE L1 -6 6630 6455 1 764 22 0 0 0 chr6 23586492 23586514 -125930523 + AT_rich Low_complexity Low_complexity 1 22 0 1 764 182 345 73 0 chr6 23589442 23589552 -125927485 - L3 LINE CR1 -227 4262 4145 1 764 726 239 124 18 chr6 23589668 23589894 -125927143 - MTC LTR MaLR 0 421 172 1 764 355 229 60 0 chr6 23589873 23589956 -125927081 - 5S rRNA rRNA -33 88 1 1 764 422 295 14 120 chr6 23589955 23590064 -125926973 - MTC LTR MaLR -210 211 113 1 764 930 181 85 5 chr6 23590064 23590253 -125926784 + B3 SINE B2 1 204 -12 1 764 422 295 14 120 chr6 23590253 23590351 -125926686 - MTC LTR MaLR -309 112 27 1 764 240 329 78 88 chr6 23590886 23591206 -125925831 - ORR1D2 LTR MaLR -53 317 1 1 764 186 250 136 62 chr6 23591596 23591677 -125925360 - MER5A DNA MER1_type -4 185 99 1 764 221 294 19 19 chr6 23592267 23592319 -125924718 + ID4_ SINE ID 16 67 -16 1 764 951 42 0 0 chr6 23592757 23592877 -125924160 + (TCTA)n Simple_repeat Simple_repeat 2 121 0 1 764 495 0 0 0 chr6 23592891 23592946 -125924091 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 765 180 0 0 0 chr6 23593412 23593432 -125923605 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 765 450 0 0 0 chr6 23593447 23593497 -125923540 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 765 538 229 0 9 chr6 23593515 23593621 -125923416 - RSINE1 SINE B4 -54 111 7 1 765 2631 57 0 0 chr6 23593980 23594311 -125922726 - L1Md_F2 LINE L1 -13 6569 6239 1 765 987 310 31 38 chr6 23594811 23595103 -125921934 + B4A SINE B4 1 290 -2 1 765 450 0 0 0 chr6 23595126 23595176 -125921861 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 765 378 0 0 0 chr6 23595176 23595217 -125921820 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 765 333 0 0 0 chr6 23595217 23595253 -125921784 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 765 809 126 0 0 chr6 23596788 23596915 -125920122 + L1_Mus4 LINE L1 5965 6091 -545 1 765 3062 99 0 2 chr6 23596936 23597363 -125919674 + L1_Mus4 LINE L1 6203 6628 -8 1 765 852 148 234 5 chr6 23600747 23600931 -125916106 + URR1A DNA MER1_type 1 226 0 1 765 31 26 0 0 chr6 23601046 23601084 -125915953 + AT_rich Low_complexity Low_complexity 1 38 0 1 765 1098 91 0 0 chr6 23601089 23601232 -125915805 + B1_Mus1 SINE Alu 1 143 -5 1 765 189 94 0 0 chr6 23601235 23601267 -125915770 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1 765 1214 46 46 6 chr6 23601373 23601547 -125915490 + MERVL-int LTR ERVL 2132 2312 -3173 1 765 1382 294 99 12 chr6 23601901 23602722 -125914315 + Lx8 LINE L1 6295 7196 -277 1 765 25 0 0 0 chr6 23603663 23603688 -125913349 + AT_rich Low_complexity Low_complexity 1 25 0 1 765 216 276 51 110 chr6 23606633 23606751 -125910286 - B1_Mus1 SINE Alu 0 148 38 1 765 316 349 59 20 chr6 23606654 23606806 -125910231 - ID_B1 SINE B4 -2 222 65 1 765 360 300 90 57 chr6 23606997 23607209 -125909828 + MER20 DNA MER1_type 1 219 0 1 765 294 95 0 0 chr6 23608270 23608312 -125908725 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 765 279 0 0 0 chr6 23608312 23608343 -125908694 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 765 251 242 28 4 chr6 23609142 23609227 -125907810 + Lx6 LINE L1 6633 6734 -962 1 765 368 182 97 26 chr6 23609643 23609756 -125907281 + Lx9 LINE L1 7523 7643 -1 1 765 1424 198 20 10 chr6 23609944 23610335 -125906702 + RLTR12B LTR ERVK 18 517 -11 1 765 3107 73 66 24 chr6 23611147 23611599 -125905438 + RLTR13C2 LTR ERVK 1 471 -337 1 765 299 65 84 21 chr6 23612233 23612328 -125904709 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 765 495 134 0 0 chr6 23612362 23612444 -125904593 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 765 584 332 59 20 chr6 23613030 23613285 -125903752 - MLT1A0 LTR MaLR -12 353 89 1 765 460 257 42 0 chr6 23613528 23613634 -125903403 - PB1D10 SINE Alu -1 126 7 1 765 182 246 0 81 chr6 23613842 23613904 -125903133 + MIR SINE MIR 175 231 -31 1 765 225 208 0 20 chr6 23615096 23615145 -125901892 + A-rich Low_complexity Low_complexity 4 51 0 1 765 1038 273 30 26 chr6 23615681 23615952 -125901085 - MTC LTR MaLR -49 372 101 1 765 1217 116 47 16 chr6 23615952 23616207 -125900830 + L1_Mur3 LINE L1 5114 5376 -504 1 765 3497 145 21 5 chr6 23616174 23616833 -125900204 + L1_Mur2 LINE L1 3175 3844 -2033 1 765 6531 119 18 16 chr6 23616816 23618306 -125898731 + Lx LINE L1 5160 6652 -2 1 765 299 138 0 30 chr6 23618295 23618362 -125898675 + L1_Mur2 LINE L1 5339 5403 -477 1 765 942 96 38 6 chr6 23618362 23618520 -125898517 + L1_Mus3 LINE L1 6474 6636 -2 1 765 369 0 0 0 chr6 23618555 23618596 -125898441 + (T)n Simple_repeat Simple_repeat 1 41 0 1 765 36250 30 0 0 chr6 23618680 23625106 -125891931 - L1Md_T LINE L1 0 6585 63 1 765 240 167 0 0 chr6 23625105 23625147 -125891890 + L1_Mur2 LINE L1 5421 5462 -418 1 765 4058 186 36 58 chr6 23625146 23625174 -125891863 + L1_Mur3 LINE L1 4599 4621 -1259 1 765 348 77 0 0 chr6 23625174 23625226 -125891811 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 765 4058 186 36 58 chr6 23625226 23626296 -125890741 + L1_Mur3 LINE L1 4622 5673 -207 1 765 747 144 36 7 chr6 23626418 23626558 -125890479 + L1_Mur2 LINE L1 5637 5780 -100 1 765 415 202 32 0 chr6 23626544 23626638 -125890399 + L1_Mur1 LINE L1 4468 4564 -1322 1 765 465 257 28 7 chr6 23626631 23626772 -125890265 + Lx7 LINE L1 7090 7233 -463 1 765 594 171 37 19 chr6 23626775 23626882 -125890155 - B1_Mur4 SINE Alu -8 142 34 1 765 620 141 7 22 chr6 23626948 23627086 -125889951 + Lx7 LINE L1 7368 7503 -193 1 765 6894 38 2 1 chr6 23627098 23627967 -125889070 - L1Md_F2 LINE L1 -3 6579 5710 1 765 402 216 127 55 chr6 23627986 23628193 -125888844 + Lx7 LINE L1 7491 7692 -4 1 765 424 200 144 0 chr6 23628204 23628294 -125888743 - MTC LTR MaLR -318 103 1 1 765 446 188 10 0 chr6 23629628 23629729 -125887308 + CT-rich Low_complexity Low_complexity 1 102 0 1 765 258 32 0 0 chr6 23629749 23629780 -125887257 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 765 498 33 0 0 chr6 23629809 23629869 -125887168 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 765 437 279 101 14 chr6 23629869 23630007 -125887030 - B3A SINE B2 -47 151 2 1 765 1332 179 0 4 chr6 23630798 23631062 -125885975 + MusHAL1 LINE L1 1507 1769 -943 1 765 450 0 0 0 chr6 23631456 23631506 -125885531 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1 765 787 192 207 0 chr6 23631508 23631721 -125885316 + Lx6 LINE L1 7202 7458 -2 1 765 895 209 63 8 chr6 23631748 23632003 -125885034 - Lx9 LINE L1 -1 7643 7375 1 765 1829 161 58 0 chr6 23634442 23634753 -125882284 - MTC LTR MaLR -92 329 1 1 765 396 57 0 0 chr6 23634892 23634945 -125882092 - L1_Mus2 LINE L1 -263 6303 6251 1 765 2069 46 8 4 chr6 23634945 23635206 -125881831 + L1_Mus2 LINE L1 6305 6566 0 1 765 623 294 210 13 chr6 23635400 23635700 -125881337 - ORR1E LTR MaLR 0 359 1 1 765 809 350 50 26 chr6 23635987 23636526 -125880511 + Lx8 LINE L1 6761 7312 -161 1 765 300 212 0 0 chr6 23636782 23636848 -125880189 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 765 462 328 115 33 chr6 23637083 23637631 -125879406 - L1MC LINE L1 -839 5307 4703 1 765 387 0 0 0 chr6 23638982 23639025 -125878012 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 1 765 386 317 8 16 chr6 23639723 23639845 -125877192 - MER45A DNA Tip100 0 178 58 1 765 270 0 0 0 chr6 23639919 23639949 -125877088 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 765 189 0 0 0 chr6 23640405 23640426 -125876611 + (A)n Simple_repeat Simple_repeat 1 21 0 1 765 261 0 0 0 chr6 23641660 23641689 -125875348 + (T)n Simple_repeat Simple_repeat 1 29 0 1 765 6844 48 4 3 chr6 23641708 23642605 -125874432 - L1Md_F2 LINE L1 0 6582 5698 1 765 328 257 73 9 chr6 23642688 23642798 -125874239 + L1M2 LINE L1 4990 5106 -1037 1 765 2028 284 86 41 chr6 23642808 23645330 -125871707 + L1MC1 LINE L1 3678 6319 -14 1 765 337 367 43 7 chr6 23645352 23645475 -125871562 + RSINE1 SINE B4 4 128 -37 1 765 459 63 0 0 chr6 23645475 23645538 -125871499 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 765 337 367 43 7 chr6 23645538 23645554 -125871483 + RSINE1 SINE B4 129 148 -17 1 765 388 342 21 11 chr6 23645641 23645830 -125871207 + B3A SINE B2 3 193 -5 1 765 387 236 15 23 chr6 23645845 23645975 -125871062 - Lx6 LINE L1 -2 7458 7330 1 765 3760 193 66 22 chr6 23645909 23646896 -125870141 + L1_Mur3 LINE L1 75 1104 -6608 1 765 24 77 0 0 chr6 23647249 23647301 -125869736 + AT_rich Low_complexity Low_complexity 1 52 0 1 765 1891 204 45 22 chr6 23647671 23648073 -125868964 - MTD LTR MaLR -8 411 1 1 765 1276 180 102 90 chr6 23648217 23648584 -125868453 + ORR1B1 LTR MaLR 1 327 -67 1 765 9892 76 13 16 chr6 23648594 23649868 -125867169 + Lx3_Mus LINE L1 5587 6857 -152 1 765 540 30 0 0 chr6 23649868 23649934 -125867103 + (GGGAGA)n Simple_repeat Simple_repeat 4 69 0 1 765 9892 76 13 16 chr6 23649934 23650084 -125866953 + Lx3_Mus LINE L1 6858 7007 -2 1 765 385 103 103 0 chr6 23650084 23650152 -125866885 + ORR1B1 LTR MaLR 320 394 0 1 765 198 0 0 0 chr6 23650156 23650178 -125866859 + (ATG)n Simple_repeat Simple_repeat 3 24 0 1 765 371 252 56 161 chr6 23650295 23650329 -125866708 - B1F2 SINE Alu -1 148 5 1 765 414 308 0 55 chr6 23650329 23650456 -125866581 - ID_B1 SINE B4 -19 205 86 1 765 285 29 0 0 chr6 23650530 23650564 -125866473 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 765 213 39 0 0 chr6 23650564 23650590 -125866447 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 765 238 132 19 19 chr6 23650588 23650642 -125866395 + (ATTG)n Simple_repeat Simple_repeat 4 57 0 1 765 285 316 65 22 chr6 23651045 23651184 -125865853 - L3 LINE CR1 -521 3968 3824 1 765 22 0 0 0 chr6 23651587 23651609 -125865428 + AT_rich Low_complexity Low_complexity 1 22 0 1 765 227 327 169 68 chr6 23652527 23652865 -125864172 + MLT1J LTR MaLR 78 449 -63 1 765 29 0 0 0 chr6 23652988 23653017 -125864020 + AT_rich Low_complexity Low_complexity 1 29 0 2 765 499 211 38 38 chr6 23653674 23653832 -125863205 - L1MA9 LINE L1 -156 6156 5999 2 765 3117 77 2 12 chr6 23654061 23654470 -125862567 + MTB_Mm LTR MaLR 1 405 -2 2 765 1300 142 14 14 chr6 23655312 23655533 -125861504 + URR1B DNA MER1_type 5 225 0 2 765 870 287 77 28 chr6 23655664 23655990 -125861047 + MER2 DNA MER2_type 2 343 -2 2 765 285 273 66 53 chr6 23658166 23658317 -125858720 - MLT1L LTR MaLR -18 592 440 2 765 516 16 0 0 chr6 23658426 23658487 -125858550 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 765 205 292 0 0 chr6 23658494 23658559 -125858478 + GA-rich Low_complexity Low_complexity 2 66 0 2 765 3174 61 27 173 chr6 23660307 23660863 -125856174 + MT2C_Mm LTR ERVL 1 475 0 2 765 466 314 44 39 chr6 23660961 23661143 -125855894 - B4A SINE B4 -5 287 105 2 765 3188 53 179 2 chr6 23661634 23662069 -125854968 + RLTR1B LTR ERV1 1 512 0 2 765 1420 134 64 11 chr6 23662622 23662887 -125854150 + Lx LINE L1 6375 6653 -1 2 765 403 306 13 13 chr6 23662923 23663072 -125853965 + B1F SINE Alu 1 149 0 2 765 260 307 30 0 chr6 23663797 23663899 -125853138 + ID4 SINE ID 5 109 -43 2 765 241 155 17 17 chr6 23664737 23664796 -125852241 + GA-rich Low_complexity Low_complexity 3 61 0 2 765 328 254 28 42 chr6 23664797 23664848 -125852189 + polypurine Low_complexity Low_complexity 2 48 0 2 765 666 0 0 0 chr6 23664848 23664922 -125852115 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 2 765 328 254 28 42 chr6 23664922 23665014 -125852023 + polypurine Low_complexity Low_complexity 49 143 0 2 765 246 192 0 0 chr6 23665233 23665285 -125851752 + (TTA)n Simple_repeat Simple_repeat 1 52 0 2 765 2486 103 8 13 chr6 23665540 23665913 -125851124 - Lx3_Mus LINE L1 -8 7001 6631 2 765 884 232 37 0 chr6 23665914 23666104 -125850933 - B3 SINE B2 -17 199 3 2 765 22 35 0 0 chr6 23666104 23666133 -125850904 + AT_rich Low_complexity Low_complexity 1 29 0 2 765 2057 163 133 20 chr6 23666174 23666580 -125850457 + RLTR44E LTR ERVK 1 452 0 2 765 15715 49 62 5 chr6 23666580 23669164 -125847873 + RLTR44-int LTR ERVK 1 2808 -4 2 765 2894 106 28 9 chr6 23669167 23669604 -125847433 + RLTR44E LTR ERVK 1 445 -7 2 765 775 280 14 0 chr6 23670860 23671067 -125845970 + B3 SINE B2 2 211 -5 2 765 670 264 14 15 chr6 23671202 23671373 -125845664 + ID_B1 SINE B4 81 244 -48 2 765 5079 38 0 0 chr6 23672102 23672706 -125844331 + L1Md_T LINE L1 5979 6582 0 2 765 21 57 0 0 chr6 23672945 23672980 -125844057 + AT_rich Low_complexity Low_complexity 1 35 0 2 765 613 340 26 91 chr6 23672989 23673296 -125843741 + B4 SINE B4 3 289 -3 2 765 1895 172 69 10 chr6 23674492 23674897 -125842140 - Lx4A LINE L1 -3 7055 6627 2 765 238 338 0 90 chr6 23676413 23676491 -125840546 + B1F1 SINE Alu 1 71 -78 2 765 251 203 14 0 chr6 23676526 23676595 -125840442 + GA-rich Low_complexity Low_complexity 2 71 0 2 765 497 365 140 25 chr6 23676595 23677342 -125839695 + HAL1 LINE L1 116 947 -1560 2 765 1629 21 11 0 chr6 23677445 23677633 -125839404 + B2_Mm1a SINE B2 2 191 -2 2 765 22 0 0 0 chr6 23677922 23677944 -125839093 + AT_rich Low_complexity Low_complexity 1 22 0 2 765 310 233 0 52 chr6 23677952 23678029 -125839008 + B3 SINE B2 2 74 -142 2 765 200 368 115 12 chr6 23678067 23678320 -125838717 + L2c LINE L2 3079 3357 -30 2 765 261 397 45 8 chr6 23678356 23678488 -125838549 - L2a LINE L2 -1 3425 3289 2 765 1300 300 37 44 chr6 23678520 23678925 -125838112 - MTD LTR MaLR 0 419 18 2 765 893 157 168 0 chr6 23679942 23680133 -125836904 + URR1B DNA MER1_type 1 223 -2 2 765 195 129 0 0 chr6 23680433 23680464 -125836573 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 765 253 338 46 26 chr6 23680535 23680687 -125836350 - MIRb SINE MIR -73 195 41 2 765 26 0 0 0 chr6 23680794 23680820 -125836217 + AT_rich Low_complexity Low_complexity 1 26 0 2 765 263 220 20 0 chr6 23680881 23680931 -125836106 + RSINE1 SINE B4 90 140 -25 2 765 284 241 0 0 chr6 23681895 23681953 -125835084 - Lx7 LINE L1 -1014 6682 6625 2 765 1590 299 24 35 chr6 23681950 23682585 -125834452 + Lx7 LINE L1 6689 7316 -380 2 765 190 89 0 62 chr6 23684920 23684968 -125832069 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2 765 474 65 0 0 chr6 23685047 23685109 -125831928 + (CAA)n Simple_repeat Simple_repeat 2 63 0 2 765 190 278 18 36 chr6 23685139 23685195 -125831842 + MIRc SINE MIR 67 121 -147 2 765 393 22 0 0 chr6 23685320 23685366 -125831671 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 765 246 302 56 104 chr6 23685379 23685523 -125831514 + ORR1E LTR MaLR 6 142 -217 2 765 387 244 191 43 chr6 23686192 23686333 -125830704 + RSINE1 SINE B4 3 164 -1 2 765 3392 23 13 0 chr6 23687354 23687745 -125829292 + MTA_Mm LTR MaLR 1 396 0 2 765 654 261 74 37 chr6 23689402 23689673 -125827364 - Lx8 LINE L1 -2 7471 7191 2 765 5489 197 53 10 chr6 23691122 23692318 -125824719 + Lx9 LINE L1 6375 7622 -22 2 765 450 257 157 33 chr6 23692346 23692499 -125824538 - B3A SINE B2 -9 207 36 2 765 1611 313 91 31 chr6 23692643 23693542 -125823495 - Lx8 LINE L1 -181 7292 6340 2 765 757 290 15 15 chr6 23693847 23694043 -125822994 - B3A SINE B2 -2 196 1 2 765 234 225 75 43 chr6 23694829 23694922 -125822115 - L1M6 LINE L1 -4968 1528 1433 2 765 297 0 0 0 chr6 23696679 23696712 -125820325 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 765 27 0 0 0 chr6 23696763 23696790 -125820247 + AT_rich Low_complexity Low_complexity 1 27 0 2 765 219 121 0 0 chr6 23696797 23696830 -125820207 + B3 SINE B2 1 33 -183 2 765 756 173 0 0 chr6 23696830 23696980 -125820057 + (TA)n Simple_repeat Simple_repeat 1 150 0 2 765 330 26 0 0 chr6 23696971 23697010 -125820027 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 765 565 256 33 0 chr6 23697010 23697131 -125819906 + B3A SINE B2 32 156 -42 2 765 962 306 85 0 chr6 23697711 23698064 -125818973 + LTR65 LTR ERV1 146 528 -141 2 765 508 211 39 0 chr6 23698065 23698169 -125818868 + PB1D10 SINE Alu 9 116 -1 2 765 473 239 35 35 chr6 23699778 23699921 -125817116 + B1F1 SINE Alu 1 143 -6 2 765 222 91 0 0 chr6 23699995 23700028 -125817009 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 2 765 467 313 18 58 chr6 23701179 23701256 -125815781 - B3A SINE B2 -1 215 140 2 765 408 40 0 0 chr6 23701256 23701306 -125815731 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 765 467 321 47 23 chr6 23701306 23701452 -125815585 - B3A SINE B2 -47 151 1 2 765 1058 71 121 6 chr6 23701906 23702063 -125814974 - B2_Mm2 SINE B2 -20 175 1 2 765 470 308 57 131 chr6 23702227 23702541 -125814496 + MLT1A LTR MaLR 1 291 -83 2 765 471 35 0 0 chr6 23703068 23703125 -125813912 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 2 765 574 259 209 35 chr6 23703302 23703592 -125813445 + MTEa LTR MaLR 6 345 -34 2 765 468 0 0 0 chr6 23703974 23704026 -125813011 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 765 379 316 37 0 chr6 23706709 23706845 -125810192 + B1F SINE Alu 1 141 -8 2 765 21 36 0 0 chr6 23707639 23707667 -125809370 + AT_rich Low_complexity Low_complexity 1 28 0 2 765 326 280 0 51 chr6 23707946 23708025 -125809012 + ID4_ SINE ID 2 76 -7 2 765 528 154 0 0 chr6 23708025 23708129 -125808908 + (CA)n Simple_repeat Simple_repeat 1 104 0 2 765 10594 131 25 12 chr6 23709039 23711748 -125805289 + Lx LINE L1 3919 6654 0 2 765 542 180 162 0 chr6 23712314 23712425 -125804612 + B3A SINE B2 2 130 -68 2 765 323 202 0 12 chr6 23712825 23712905 -125804132 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 765 337 311 90 8 chr6 23712925 23713058 -125803979 - B1F SINE Alu -5 144 1 2 765 210 118 0 0 chr6 23713929 23713963 -125803074 + (T)n Simple_repeat Simple_repeat 1 34 0 2 765 23 0 0 0 chr6 23714109 23714132 -125802905 + AT_rich Low_complexity Low_complexity 1 23 0 2 765 483 194 0 0 chr6 23714419 23714522 -125802515 + (TA)n Simple_repeat Simple_repeat 2 104 0 2 765 231 310 58 70 chr6 23715273 23715429 -125801608 - MLT1B LTR MaLR -40 350 197 2 765 459 269 47 33 chr6 23715543 23715693 -125801344 - MLT1B LTR MaLR -232 158 7 2 765 272 264 45 11 chr6 23715748 23715836 -125801201 + LTR41 LTR ERVL 660 750 -18 2 765 458 303 6 11 chr6 23715898 23716032 -125801005 - B3A SINE B2 -58 137 1 2 765 928 164 43 11 chr6 23716488 23716673 -125800364 + B2_Mm2 SINE B2 2 192 -3 2 765 21 0 0 0 chr6 23717116 23717137 -125799900 + AT_rich Low_complexity Low_complexity 1 21 0 2 765 38014 29 1 6 chr6 23717692 23723874 -125793163 - L1Md_T LINE L1 0 6582 440 2 766 360 278 119 8 chr6 23724527 23724661 -125792376 + Lx7 LINE L1 7171 7319 -377 2 766 248 255 216 6 chr6 23724657 23724819 -125792218 + Lx7 LINE L1 7482 7677 -19 2 766 612 127 17 17 chr6 23725382 23725502 -125791535 + GA-rich Low_complexity Low_complexity 2 121 0 2 766 318 305 114 20 chr6 23725739 23725940 -125791097 + Cheshire DNA MER1_type 54 273 -2147 2 766 1526 179 139 27 chr6 23726343 23726400 -125790637 + MTC LTR MaLR 6 68 -353 2 766 3448 34 0 0 chr6 23726400 23726787 -125790250 + L1Md_T LINE L1 6196 6582 0 2 766 1526 179 139 27 chr6 23726787 23727096 -125789941 + MTC LTR MaLR 69 413 -8 2 766 276 270 203 0 chr6 23727190 23727338 -125789699 - L1MD2 LINE L1 -4 6355 6178 2 766 640 139 24 0 chr6 23728002 23728167 -125788870 + (CAGA)n Simple_repeat Simple_repeat 4 172 0 2 766 7699 59 2 44 chr6 23728264 23729811 -125787226 - L1Md_F2 LINE L1 0 6582 5075 2 766 306 259 246 39 chr6 23729816 23730178 -125786859 + L1MDa LINE L1 1120 1556 -5077 2 766 1159 268 154 49 chr6 23730197 23731428 -125785609 + L1MDa LINE L1 1625 2981 -3556 2 766 725 281 64 14 chr6 23731679 23731961 -125785076 - L1MD LINE L1 -3636 2510 2215 3 766 507 107 0 0 chr6 23732202 23732277 -125784760 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 766 2561 83 3 25 chr6 23733138 23733496 -125783541 - L1_Mus3 LINE L1 0 6638 6289 3 766 1795 108 4 0 chr6 23733498 23733748 -125783289 - L1_Mm LINE L1 -337 5546 5296 3 766 1049 110 0 0 chr6 23734496 23734632 -125782405 + B1_Mus1 SINE Alu 3 138 -10 3 766 286 347 34 14 chr6 23734737 23734883 -125782154 - MIR SINE MIR -112 150 2 3 766 721 249 52 13 chr6 23735794 23736026 -125781011 + B4A SINE B4 1 241 -51 3 766 230 172 0 49 chr6 23736072 23736133 -125780904 + GA-rich Low_complexity Low_complexity 2 59 0 3 766 706 293 68 27 chr6 23736159 23736496 -125780541 - Lx8 LINE L1 -442 7031 6681 3 766 504 205 31 39 chr6 23737070 23737197 -125779840 - ORR1B1-int LTR MaLR -233 1276 1151 3 766 983 221 0 0 chr6 23737199 23737407 -125779630 + ORR1B1-int LTR MaLR 1301 1508 -1 3 766 27 29 0 0 chr6 23738291 23738325 -125778712 + AT_rich Low_complexity Low_complexity 1 34 0 3 766 610 249 37 63 chr6 23738328 23738517 -125778520 - B3A SINE B2 -14 184 1 3 766 665 106 10 0 chr6 23738807 23738911 -125778126 + (TC)n Simple_repeat Simple_repeat 2 106 0 3 766 459 0 0 0 chr6 23738976 23739027 -125778010 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 766 248 253 12 12 chr6 23739309 23739389 -125777648 - Lx7 LINE L1 -16 7680 7601 3 766 1163 232 132 29 chr6 23739424 23739800 -125777237 - MTD LTR MaLR -16 403 11 3 766 2569 311 71 32 chr6 23741564 23742797 -125774240 - Lx8 LINE L1 0 7473 6193 3 766 2672 121 62 12 chr6 23743295 23743696 -125773341 + MTC LTR MaLR 1 421 0 3 766 335 310 87 41 chr6 23744416 23744611 -125772426 - RMER15 LTR ERVL 0 575 372 3 766 850 181 30 0 chr6 23744625 23744758 -125772279 + B1_Mus1 SINE Alu 2 138 -10 3 766 2131 13 0 0 chr6 23745387 23745622 -125771415 + L1Md_T LINE L1 5352 5586 -297 3 766 9129 28 0 0 chr6 23745622 23746618 -125770419 + L1Md_T LINE L1 5587 6582 0 3 766 293 280 11 21 chr6 23747344 23747439 -125769598 - MIR SINE MIR -150 112 19 3 766 3135 92 9 2 chr6 23747550 23747974 -125769063 - L1_Mus4 LINE L1 0 6636 6210 3 766 4481 119 35 19 chr6 23748320 23749064 -125767973 + RMER6A LTR ERVK 1 756 0 3 766 259 164 16 16 chr6 23749245 23749307 -125767730 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 3 766 6935 47 0 4 chr6 23749696 23750495 -125766542 + L1Md_F2 LINE L1 5787 6582 0 3 766 441 0 0 0 chr6 23752148 23752197 -125764840 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 766 486 33 0 0 chr6 23752198 23752258 -125764779 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 766 522 31 0 0 chr6 23754316 23754380 -125762657 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 766 268 243 27 0 chr6 23754439 23754513 -125762524 + LTR78 LTR ERV1 1018 1093 -211 3 766 234 0 0 0 chr6 23754608 23754634 -125762403 + (A)n Simple_repeat Simple_repeat 1 26 0 3 766 614 324 11 31 chr6 23757208 23757399 -125759638 - B3 SINE B2 0 216 30 3 766 380 253 95 0 chr6 23757397 23757492 -125759545 - MTEb LTR MaLR -275 104 1 3 766 25 65 0 0 chr6 23758558 23758604 -125758433 + AT_rich Low_complexity Low_complexity 1 46 0 3 766 664 178 8 0 chr6 23759216 23759334 -125757703 - Lx9 LINE L1 -168 7476 7358 3 766 25 65 0 0 chr6 23759341 23759387 -125757650 + AT_rich Low_complexity Low_complexity 1 46 0 3 766 528 16 0 0 chr6 23760678 23760739 -125756298 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 766 225 94 0 0 chr6 23760739 23760770 -125756267 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 766 6375 118 4 19 chr6 23760937 23761162 -125755875 + RMER17B LTR ERVK 1 227 -731 3 766 3016 36 0 137 chr6 23761162 23761585 -125755452 - RLTR10B2 LTR ERVK 0 365 1 3 766 6375 118 4 19 chr6 23761585 23762331 -125754706 + RMER17B LTR ERVK 228 958 0 3 766 280 385 16 33 chr6 23762348 23762469 -125754568 - B4A SINE B4 -169 123 5 3 766 769 245 122 0 chr6 23762472 23762660 -125754377 - ID_B1 SINE B4 -7 217 7 3 766 294 340 29 0 chr6 23763332 23763435 -125753602 + PB1D10 SINE Alu 1 106 -11 3 766 269 175 32 0 chr6 23763441 23763504 -125753533 + GA-rich Low_complexity Low_complexity 3 67 0 3 766 234 392 10 0 chr6 23764536 23764638 -125752399 + MIRc SINE MIR 20 122 -146 3 766 22 70 0 0 chr6 23765313 23765356 -125751681 + AT_rich Low_complexity Low_complexity 1 43 0 3 766 531 0 0 0 chr6 23765610 23765669 -125751368 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 766 360 0 0 0 chr6 23765669 23765708 -125751329 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 766 330 270 100 25 chr6 23766114 23766360 -125750677 + L1MEf LINE L1 1314 1667 -840 3 766 26 0 0 0 chr6 23767127 23767153 -125749884 + AT_rich Low_complexity Low_complexity 1 26 0 3 766 595 284 0 0 chr6 23767961 23768109 -125748928 + B1_Mur2 SINE Alu 2 149 0 3 766 414 0 0 0 chr6 23768425 23768471 -125748566 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 766 1148 259 37 30 chr6 23768472 23768771 -125748266 + Lx9 LINE L1 6520 6820 -824 3 766 2795 223 21 3 chr6 23768793 23769404 -125747633 + Lx9 LINE L1 7016 7637 -7 3 766 29 0 0 0 chr6 23769709 23769738 -125747299 + AT_rich Low_complexity Low_complexity 1 29 0 3 766 1518 240 66 3 chr6 23769917 23770235 -125746802 - MTC LTR MaLR -8 413 76 3 766 246 147 29 14 chr6 23770407 23770476 -125746561 + CT-rich Low_complexity Low_complexity 4 73 0 3 766 336 64 0 0 chr6 23770559 23770606 -125746431 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 766 936 154 24 0 chr6 23770640 23770809 -125746228 - Lx LINE L1 0 6654 6482 3 766 905 99 21 0 chr6 23770898 23771040 -125745997 + URR1A DNA MER1_type 81 225 -1 3 766 21 0 0 0 chr6 23771704 23771725 -125745312 + AT_rich Low_complexity Low_complexity 1 21 0 3 766 182 363 55 105 chr6 23772082 23772282 -125744755 + L2a LINE L2 2991 3180 -246 3 766 690 308 28 41 chr6 23772475 23772766 -125744271 + B4A SINE B4 6 292 0 3 766 23 78 0 0 chr6 23773108 23773159 -125743878 + AT_rich Low_complexity Low_complexity 1 51 0 3 766 916 176 7 0 chr6 23773776 23773924 -125743113 - B1_Mur4 SINE Alu 0 150 2 3 766 21 71 0 0 chr6 23774212 23774254 -125742783 + AT_rich Low_complexity Low_complexity 1 42 0 3 766 1624 189 170 10 chr6 23774290 23774381 -125742656 - Lx9 LINE L1 -26 7618 7519 3 766 563 74 0 12 chr6 23774381 23774463 -125742574 + (CATA)n Simple_repeat Simple_repeat 1 81 0 3 766 1624 189 170 10 chr6 23774463 23774782 -125742255 - Lx9 LINE L1 -126 7518 7142 3 766 270 0 0 0 chr6 23774798 23774828 -125742209 + (A)n Simple_repeat Simple_repeat 1 30 0 3 766 357 86 0 0 chr6 23775266 23775324 -125741713 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 766 534 82 0 0 chr6 23775324 23775409 -125741628 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 766 217 363 85 90 chr6 23775499 23775699 -125741338 + B4A SINE B4 86 284 -8 3 766 189 226 0 0 chr6 23775726 23775779 -125741258 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 766 343 262 83 18 chr6 23775802 23775911 -125741126 + RSINE1 SINE B4 8 123 -42 3 766 23 0 0 0 chr6 23776162 23776185 -125740852 + AT_rich Low_complexity Low_complexity 1 23 0 3 766 805 297 160 10 chr6 23776232 23776538 -125740499 + ORR1E LTR MaLR 1 352 -7 3 766 398 283 100 38 chr6 23777966 23778208 -125738829 - B4A SINE B4 -6 286 3 3 766 687 199 114 109 chr6 23778274 23778449 -125738588 + B3 SINE B2 1 176 -19 3 766 494 194 28 37 chr6 23778456 23778563 -125738474 + PB1D9 SINE Alu 10 115 -5 3 766 598 180 0 14 chr6 23778563 23778704 -125738333 + GA-rich Low_complexity Low_complexity 2 140 0 3 766 57 61 0 0 chr6 23779305 23779404 -125737633 + AT_rich Low_complexity Low_complexity 1 99 0 3 766 225 227 75 15 chr6 23780920 23780987 -125736050 - ID4_ SINE ID -11 72 2 3 766 34 0 0 0 chr6 23781048 23781082 -125735955 + AT_rich Low_complexity Low_complexity 1 34 0 3 766 3241 183 78 113 chr6 23781144 23782151 -125734886 - Lx9 LINE L1 0 7644 6674 3 766 245 146 0 20 chr6 23782222 23782271 -125734766 + T-rich Low_complexity Low_complexity 4 51 0 3 766 650 239 96 13 chr6 23782662 23782819 -125734218 - MER5B DNA MER1_type -1 177 8 3 766 591 301 0 7 chr6 23783226 23783373 -125733664 - RSINE1 SINE B4 -7 158 13 3 766 201 132 0 0 chr6 23783471 23783509 -125733528 + (A)n Simple_repeat Simple_repeat 1 38 0 3 766 261 83 0 0 chr6 23783665 23783701 -125733336 + (CTG)n Simple_repeat Simple_repeat 3 38 0 3 766 234 0 0 0 chr6 23785990 23786016 -125731021 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 3 766 43 81 0 0 chr6 23789363 23789462 -125727575 + GC_rich Low_complexity Low_complexity 1 99 0 3 766 25 83 0 0 chr6 23789543 23789603 -125727434 + GC_rich Low_complexity Low_complexity 1 60 0 3 766 351 0 0 0 chr6 23790709 23790748 -125726289 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 766 24 0 0 0 chr6 23790864 23790888 -125726149 + AT_rich Low_complexity Low_complexity 1 24 0 3 766 1131 71 0 0 chr6 23790900 23791041 -125725996 - B1_Mus1 SINE Alu -7 141 1 3 766 1783 179 43 30 chr6 23791685 23792054 -125724983 + ORR1D1 LTR MaLR 1 374 0 3 766 745 284 59 21 chr6 23793136 23793323 -125723714 + ID_B1 SINE B4 18 211 -13 3 766 24 32 0 0 chr6 23793337 23793368 -125723669 + AT_rich Low_complexity Low_complexity 1 31 0 3 766 22 0 0 0 chr6 23794176 23794198 -125722839 + AT_rich Low_complexity Low_complexity 1 22 0 3 766 3347 74 0 5 chr6 23795012 23795448 -125721589 + L1Md_F2 LINE L1 6137 6570 -12 3 766 27 73 0 0 chr6 23795578 23795633 -125721404 + AT_rich Low_complexity Low_complexity 1 55 0 4 766 915 295 171 35 chr6 23796750 23796887 -125720150 - Charlie1 DNA MER1_type -17 2764 2618 4 766 1310 204 138 18 chr6 23796887 23797221 -125719816 - ORR1D1 LTR MaLR 0 374 1 4 766 915 295 171 35 chr6 23797221 23797736 -125719301 - Charlie1 DNA MER1_type -164 2617 2023 4 766 478 265 48 31 chr6 23797740 23797922 -125719115 - ORR1D2 LTR MaLR 0 370 180 4 766 426 289 94 0 chr6 23797931 23798090 -125718947 - Charlie1 DNA MER1_type -765 2016 1843 4 766 322 346 19 0 chr6 23798090 23798197 -125718840 + B4A SINE B4 2 110 -182 4 766 396 0 0 0 chr6 23798200 23798244 -125718793 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4 766 3074 73 7 7 chr6 23798244 23798660 -125718377 - L1_Mus1 LINE L1 -7 6560 6145 4 766 21 57 0 0 chr6 23799011 23799046 -125717991 + AT_rich Low_complexity Low_complexity 1 35 0 4 766 799 298 63 18 chr6 23799314 23799536 -125717501 + MTE2a LTR MaLR 57 288 -91 4 766 1018 272 65 14 chr6 23799537 23799813 -125717224 + MTE2a LTR MaLR 90 379 0 4 766 1464 59 0 11 chr6 23801892 23802081 -125714956 + B2_Mm1t SINE B2 1 187 -6 4 766 243 352 45 67 chr6 23803284 23803418 -125713619 - L2a LINE L2 -1 3425 3295 4 766 288 216 0 0 chr6 23803566 23803640 -125713397 + L1MC5 LINE L1 7755 7828 -133 4 766 393 22 0 0 chr6 23804192 23804238 -125712799 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 4 766 1096 95 0 13 chr6 23804238 23804387 -125712650 + B1_Mus1 SINE Alu 2 148 0 4 766 31 0 0 0 chr6 23804455 23804486 -125712551 + AT_rich Low_complexity Low_complexity 1 31 0 4 766 1220 158 5 9 chr6 23804486 23804710 -125712327 - Lx LINE L1 -5 6649 6427 4 766 1107 119 0 0 chr6 23804710 23804878 -125712159 - Lx2 LINE L1 -354 6643 6476 4 766 438 20 0 0 chr6 23805153 23805204 -125711833 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 766 716 240 93 39 chr6 23805388 23805425 -125711612 - B3 SINE B2 0 216 183 4 766 387 41 0 0 chr6 23805425 23805474 -125711563 + (TATG)n Simple_repeat Simple_repeat 2 50 0 4 766 716 240 93 39 chr6 23805474 23805640 -125711397 - B3 SINE B2 -34 182 2 4 766 39329 5 1 0 chr6 23805815 23812177 -125704860 - L1Md_A LINE L1 0 6582 214 4 766 25 83 0 0 chr6 23812232 23812292 -125704745 + AT_rich Low_complexity Low_complexity 1 60 0 4 766 843 72 0 0 chr6 23812332 23812443 -125704594 - B1_Mus1 SINE Alu -1 147 37 4 766 723 224 0 14 chr6 23812513 23812658 -125704379 - B1_Mur2 SINE Alu -6 143 1 4 766 496 341 11 86 chr6 23812854 23813040 -125703997 + B3A SINE B2 1 172 -26 4 766 407 319 49 21 chr6 23813290 23813434 -125703603 - B1F SINE Alu 0 149 2 4 766 243 0 0 0 chr6 23813700 23813727 -125703310 + (T)n Simple_repeat Simple_repeat 1 27 0 4 766 307 294 0 0 chr6 23814417 23814526 -125702511 + L1ME2 LINE L1 6053 6161 -3 4 766 189 132 0 0 chr6 23815463 23815501 -125701536 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 4 766 370 341 58 31 chr6 23816134 23816358 -125700679 - MIR SINE MIR -20 242 13 4 766 246 32 0 0 chr6 23817777 23817808 -125699229 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 766 486 109 55 0 chr6 23817808 23817918 -125699119 + (TA)n Simple_repeat Simple_repeat 1 116 0 4 766 290 265 139 36 chr6 23818753 23818890 -125698147 - MLT1D LTR MaLR -13 492 342 4 766 24 0 0 0 chr6 23819388 23819412 -125697625 + AT_rich Low_complexity Low_complexity 1 24 0 4 766 318 106 0 0 chr6 23821457 23821504 -125695533 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 766 753 309 20 0 chr6 23821877 23822078 -125694959 - B3 SINE B2 -5 211 7 4 766 3322 89 5 10 chr6 23822449 23822932 -125694105 - RLTR13B1 LTR ERVK -4 889 451 4 766 3684 105 13 13 chr6 23822913 23823453 -125693584 + RMER2 LTR ERV1 28 567 0 4 766 565 273 8 8 chr6 23823462 23823591 -125693446 + B1_Mur1 SINE Alu 21 149 0 4 766 481 271 66 87 chr6 23825044 23825286 -125691751 + MER52-int LTR ERV1 3567 3803 -3288 4 766 395 271 0 20 chr6 23825520 23825618 -125691419 + MER52-int LTR ERV1 4362 4457 -2634 4 766 447 338 9 28 chr6 23825674 23825890 -125691147 + MER52-int LTR ERV1 4621 4832 -2259 4 766 448 270 232 12 chr6 23825962 23826374 -125690663 - MER67C LTR ERV1 -61 650 149 4 766 358 303 115 27 chr6 23826584 23826767 -125690270 - MamRep605 Unknown Unknown -622 254 56 4 766 516 292 46 82 chr6 23827605 23827933 -125689104 - Lx8 LINE L1 -3 7470 7155 4 766 2153 198 58 39 chr6 23827942 23828456 -125688581 - RLTR11A LTR ERVK 0 528 5 4 766 6757 56 0 8 chr6 23828456 23828587 -125688450 - L1_Mm LINE L1 -1019 4864 4736 4 766 315 0 0 0 chr6 23828587 23828622 -125688415 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 766 6757 56 0 8 chr6 23828622 23829407 -125687630 - L1_Mm LINE L1 -1148 4735 3955 4 766 228 173 38 19 chr6 23829407 23829460 -125687577 + Charlie24 DNA MER1_type 1259 1312 -1138 4 766 274 79 0 0 chr6 23829460 23829498 -125687539 - L1_Mur1 LINE L1 -1982 3904 3867 4 766 7695 63 4 2 chr6 23829497 23831172 -125685865 + L1Md_F2 LINE L1 4862 6539 -43 4 766 414 0 0 0 chr6 23831179 23831225 -125685812 + (TAA)n Simple_repeat Simple_repeat 3 48 0 4 766 234 349 32 0 chr6 23831256 23831382 -125685655 - Lx8 LINE L1 -344 7129 7000 4 766 561 301 80 28 chr6 23831453 23831805 -125685232 - L1MA4 LINE L1 -374 5926 5557 4 766 314 347 48 7 chr6 23831867 23832012 -125685025 - L1MC LINE L1 -744 5402 5252 4 766 1050 264 27 8 chr6 23832041 23832301 -125684736 + MTD LTR MaLR 6 270 -149 4 766 329 324 34 59 chr6 23832301 23832540 -125684497 - L1MA4 LINE L1 -970 5173 4941 4 766 11536 147 37 9 chr6 23832569 23833702 -125683335 + Lx5 LINE L1 3654 4826 -1051 4 766 225 0 0 0 chr6 23833702 23833727 -125683310 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 766 11536 159 76 9 chr6 23833727 23835223 -125681814 + Lx5 LINE L1 4827 6427 -631 4 766 771 225 45 36 chr6 23835250 23835471 -125681566 + Lx5 LINE L1 6788 7010 -40 4 766 336 24 0 0 chr6 23835551 23835592 -125681445 + (CTATG)n Simple_repeat Simple_repeat 2 42 0 4 766 319 304 33 6 chr6 23835595 23835777 -125681260 - L1MA4 LINE L1 -1347 4796 4610 4 766 489 290 185 11 chr6 23835777 23835955 -125681082 - B3 SINE B2 -2 214 6 4 766 715 271 102 48 chr6 23835972 23836446 -125680591 - L1MA4 LINE L1 -3110 3033 2495 4 766 240 330 45 0 chr6 23836489 23836577 -125680460 - LTR75 LTR ERVL -424 138 47 4 766 287 312 27 9 chr6 23836625 23836735 -125680302 + ERVL-E-int LTR ERVL 4220 4331 -1336 4 766 203 333 0 0 chr6 23836967 23837033 -125680004 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 4 766 640 310 137 27 chr6 23837033 23837093 -125679944 - B4A SINE B4 0 292 218 4 766 447 68 0 0 chr6 23837093 23837152 -125679885 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 4 766 640 310 137 27 chr6 23837152 23837353 -125679684 - B4A SINE B4 -75 217 2 4 766 416 308 0 0 chr6 23837380 23837500 -125679537 - PB1D9 SINE Alu 0 120 1 4 766 195 204 0 0 chr6 23837801 23837845 -125679192 + CT-rich Low_complexity Low_complexity 5 48 0 4 766 360 255 302 0 chr6 23837871 23837977 -125679060 - B1F2 SINE Alu -2 147 10 4 766 223 241 50 12 chr6 23838297 23838377 -125678660 + (CATATA)n Simple_repeat Simple_repeat 3 85 0 4 766 293 311 100 27 chr6 23838623 23838993 -125678044 - L1MEg LINE L1 -4760 1324 928 4 766 2571 87 139 35 chr6 23839140 23839570 -125677467 - IAPLTR2_Mm LTR ERVK 0 475 1 4 766 25189 13 2 0 chr6 23839571 23842517 -125674520 - IAPEz-int LTR ERVK -4 6477 3525 4 766 886 73 24 0 chr6 23842517 23842640 -125674397 - IAPEz-int LTR ERVK -2770 4910 4785 4 766 1766 95 8 0 chr6 23842637 23842889 -125674148 - IAPEz-int LTR ERVK -5183 2497 2244 4 766 887 76 0 0 chr6 23842884 23843003 -125674034 - IAPEz-int LTR ERVK -5004 1477 1359 4 766 3291 78 0 15 chr6 23843003 23843642 -125673395 - IAPEz-int LTR ERVK -5819 662 109 4 766 1110 72 11 82 chr6 23843635 23843818 -125673219 - IAPEz-int LTR ERVK -6286 195 26 4 766 469 296 104 57 chr6 23843818 23843836 -125673201 - B4A SINE B4 -26 266 251 4 766 2571 87 139 35 chr6 23843836 23844266 -125672771 - IAPLTR2_Mm LTR ERVK 0 475 1 4 766 469 296 104 57 chr6 23844266 23844458 -125672579 - B4A SINE B4 -42 250 46 4 766 437 213 9 0 chr6 23844486 23844594 -125672443 + (TA)n Simple_repeat Simple_repeat 2 110 0 4 766 185 0 40 0 chr6 23844611 23844636 -125672401 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 766 234 0 0 0 chr6 23844648 23844674 -125672363 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 766 205 358 105 25 chr6 23845299 23845483 -125671554 + MIRc SINE MIR 25 222 -46 4 766 18984 49 1 5 chr6 23845780 23848993 -125668044 - L1Md_F2 LINE L1 -3 6579 3380 4 766 554 367 60 73 chr6 23849847 23850379 -125666658 - MLT1H LTR MaLR -18 531 7 4 766 231 36 0 0 chr6 23850885 23850913 -125666124 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 766 2272 181 75 4 chr6 23850922 23851470 -125665567 - L1_Mur3 LINE L1 -3837 2043 1457 4 766 243 347 162 31 chr6 23851759 23852086 -125664951 + LTR50 LTR ERVL 1 370 -425 4 766 22 0 0 0 chr6 23852783 23852805 -125664232 + AT_rich Low_complexity Low_complexity 1 22 0 4 766 25 0 0 0 chr6 23853776 23853801 -125663236 + AT_rich Low_complexity Low_complexity 1 25 0 4 766 334 305 50 65 chr6 23854104 23854304 -125662733 - B3A SINE B2 0 198 2 4 766 1226 41 0 0 chr6 23854426 23854573 -125662464 - B1_Mus2 SINE Alu 0 147 1 4 766 21 36 0 0 chr6 23854741 23854769 -125662268 + AT_rich Low_complexity Low_complexity 1 28 0 4 766 27 29 0 0 chr6 23854965 23854999 -125662038 + AT_rich Low_complexity Low_complexity 1 34 0 4 767 465 195 24 0 chr6 23855908 23855990 -125661047 + ORR1C2 LTR MaLR 301 384 0 4 767 268 313 0 0 chr6 23856046 23856113 -125660924 + ID4_ SINE ID 2 68 -15 4 767 522 0 0 0 chr6 23856125 23856183 -125660854 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 767 181 313 75 42 chr6 23856486 23856606 -125660431 + L3b LINE CR1 136 259 -223 4 767 411 346 43 19 chr6 23856685 23856847 -125660190 - MIRb SINE MIR -6 262 97 4 767 566 118 0 11 chr6 23857104 23857198 -125659839 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 4 767 361 310 10 0 chr6 23857664 23857764 -125659273 + B1F1 SINE Alu 11 111 -38 4 767 225 154 0 0 chr6 23857792 23857831 -125659206 + (CAAT)n Simple_repeat Simple_repeat 1 39 0 4 767 333 303 67 79 chr6 23857976 23858141 -125658896 + RSINE1 SINE B4 3 165 0 4 767 1794 289 83 12 chr6 23858193 23858856 -125658181 + Lx8 LINE L1 6612 7321 -152 4 767 1169 57 0 0 chr6 23858871 23859012 -125658025 - B1_Mm SINE Alu -6 141 1 4 767 200 128 0 25 chr6 23859030 23859070 -125657967 + A-rich Low_complexity Low_complexity 1 39 0 4 767 303 227 71 18 chr6 23860754 23860866 -125656171 + L1MA6 LINE L1 6180 6297 -3 5 767 522 303 70 62 chr6 23860998 23861291 -125655746 + B4A SINE B4 1 291 -1 5 767 215 333 78 43 chr6 23861374 23861515 -125655522 - L2 LINE L2 -474 2945 2800 5 767 685 355 23 12 chr6 23862022 23862367 -125654670 - ERVL-E-int LTR ERVL -786 4881 4533 5 767 294 321 57 0 chr6 23862384 23862543 -125654494 - ERVL-E-int LTR ERVL -1175 4539 4372 5 767 452 272 26 58 chr6 23862942 23863098 -125653939 + Tigger5 DNA MER2_type 2256 2406 0 5 767 34129 66 3 1 chr6 23863253 23869501 -125647536 - L1Md_F2 LINE L1 0 6582 320 5 767 261 0 0 0 chr6 23869589 23869618 -125647419 + (A)n Simple_repeat Simple_repeat 1 29 0 5 767 558 155 0 0 chr6 23869857 23869954 -125647083 + (TA)n Simple_repeat Simple_repeat 1 97 0 5 767 1749 34 0 0 chr6 23870195 23870404 -125646633 - L1Md_T LINE L1 0 6582 6374 5 767 783 216 22 0 chr6 23870500 23870639 -125646398 - B1_Mur3 SINE Alu -7 142 1 5 767 500 308 88 6 chr6 23870639 23870678 -125646359 - B4 SINE B4 -202 90 39 5 767 25 31 0 0 chr6 23872298 23872330 -125644707 + AT_rich Low_complexity Low_complexity 1 32 0 5 767 181 138 60 48 chr6 23872596 23872680 -125644357 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 5 767 180 0 0 0 chr6 23872825 23872845 -125644192 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 5 767 713 188 0 7 chr6 23874290 23874440 -125642597 + CT-rich Low_complexity Low_complexity 3 151 0 5 767 298 366 91 40 chr6 23874687 23874983 -125642054 + MLT1J2 LTR MaLR 106 416 -32 5 767 331 405 43 63 chr6 23875542 23875956 -125641081 + MLT1H1 LTR MaLR 139 544 -11 5 767 369 261 34 74 chr6 23876446 23876461 -125640576 + ID_B1 SINE B4 82 224 0 5 767 680 218 22 8 chr6 23876461 23876595 -125640442 + B1_Mur1 SINE Alu 13 148 -1 5 767 279 0 0 0 chr6 23876722 23876753 -125640284 + (TTG)n Simple_repeat Simple_repeat 3 33 0 5 767 413 246 29 103 chr6 23877230 23877366 -125639671 - PB1D10 SINE Alu -23 126 1 5 767 266 53 17 50 chr6 23878470 23878530 -125638507 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 5 767 1026 72 58 0 chr6 23878530 23878668 -125638369 - B1_Mus2 SINE Alu 0 147 2 5 767 444 284 47 99 chr6 23879464 23879636 -125637401 + RSINE1 SINE B4 3 165 0 5 767 1633 156 155 26 chr6 23879969 23879982 -125637055 - ORR1B1 LTR MaLR 0 394 388 5 767 6129 58 20 31 chr6 23879982 23880813 -125636224 + RLTR13B2 LTR ERVK 1 822 0 5 767 1633 156 155 26 chr6 23880813 23881148 -125635889 - ORR1B1 LTR MaLR -7 387 1 5 767 323 346 38 102 chr6 23884134 23884369 -125632668 - HAL1 LINE L1 -1560 947 728 5 767 1963 155 110 0 chr6 23885006 23885361 -125631676 - ORR1B1 LTR MaLR 0 394 1 5 767 916 285 66 49 chr6 23885500 23885897 -125631140 + MTE2a LTR MaLR 6 405 -14 5 767 359 245 94 31 chr6 23886119 23886279 -125630758 + RMER10A LTR ERVL 257 426 -16 5 767 533 299 197 37 chr6 23888232 23888531 -125628506 + MTEa LTR MaLR 33 379 0 5 767 2533 296 101 8 chr6 23888539 23889368 -125627669 + MTEa-int LTR MaLR 2 907 -673 5 767 1908 175 53 35 chr6 23889380 23889788 -125627249 + ORR1B2 LTR MaLR 10 366 -4 5 767 2304 256 61 23 chr6 23889788 23890720 -125626317 + ORR1D1-int LTR MaLR 78 1571 -9 5 767 1032 268 70 6 chr6 23890728 23891084 -125625953 + ORR1D1 LTR MaLR 1 379 0 5 767 353 359 72 20 chr6 23891164 23891412 -125625625 + L1M5 LINE L1 5361 5627 -497 5 767 1030 140 23 6 chr6 23891524 23891696 -125625341 - B2_Mm2 SINE B2 -19 176 2 5 767 1395 247 73 30 chr6 23891702 23892073 -125624964 + MTD LTR MaLR 8 394 -25 5 767 630 26 0 0 chr6 23892291 23892367 -125624670 + (GAAA)n Simple_repeat Simple_repeat 4 79 0 5 767 312 238 0 0 chr6 23892548 23892611 -125624426 - B4A SINE B4 -37 255 193 5 767 649 275 54 58 chr6 23892617 23892895 -125624142 + RLTR11A2 LTR ERVK 1 277 -250 5 767 317 319 42 42 chr6 23892962 23893152 -125623885 + RLTR12B LTR ERVK 301 490 -38 5 767 247 360 0 53 chr6 23893255 23893349 -125623688 - B4 SINE B4 -200 92 4 5 767 2983 223 74 1 chr6 23894645 23895378 -125621659 - Lx2B LINE L1 -5 6995 6210 5 767 380 262 0 18 chr6 23895657 23895793 -125621244 - L1MA5 LINE L1 -19 6284 6148 5 767 228 35 0 0 chr6 23896256 23896285 -125620752 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 767 198 103 0 0 chr6 23896464 23896493 -125620544 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 767 1567 182 32 3 chr6 23896513 23896828 -125620209 - Lx5 LINE L1 -581 6469 6146 5 767 2070 231 70 2 chr6 23896821 23897338 -125619699 + Lx5 LINE L1 6498 7049 -1 5 767 486 0 0 0 chr6 23897718 23897772 -125619265 + (T)n Simple_repeat Simple_repeat 1 54 0 5 767 1391 171 81 15 chr6 23898413 23898686 -125618351 - ORR1D1 LTR MaLR -83 291 1 5 767 2384 79 0 21 chr6 23898795 23899120 -125617917 - L1_Mus1 LINE L1 -1 6566 6249 5 767 516 300 61 88 chr6 23899414 23899710 -125617327 - B4A SINE B4 -4 288 1 5 767 21 36 0 0 chr6 23899999 23900027 -125617010 + AT_rich Low_complexity Low_complexity 1 28 0 5 767 946 194 21 16 chr6 23900080 23900269 -125616768 - B2_Mm2 SINE B2 0 195 6 5 767 342 0 0 0 chr6 23900378 23900416 -125616621 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 767 947 247 184 100 chr6 23900773 23901245 -125615792 - RLTR17 LTR ERVK -76 616 105 5 767 893 322 132 8 chr6 23901337 23901835 -125615202 - Lx8 LINE L1 -218 7255 6696 5 767 580 301 0 21 chr6 23901875 23901918 -125615119 - Lx8 LINE L1 -864 6609 6568 5 767 5251 53 3 0 chr6 23901918 23902575 -125614462 - L1Md_F2 LINE L1 0 6582 5924 5 767 580 301 0 21 chr6 23902575 23902721 -125614316 - Lx8 LINE L1 -906 6567 6424 5 767 260 240 50 10 chr6 23902717 23902818 -125614219 - L1M6 LINE L1 -5057 1439 1335 5 767 1294 249 78 6 chr6 23903616 23903951 -125613086 + ORR1D2 LTR MaLR 2 360 -10 5 767 254 406 77 5 chr6 23903990 23904198 -125612839 + MER58A DNA MER1_type 2 224 0 5 767 441 0 0 0 chr6 23904488 23904537 -125612500 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 767 360 0 0 0 chr6 23904537 23904577 -125612460 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 767 367 366 5 70 chr6 23905108 23905293 -125611744 + B4A SINE B4 2 174 -118 5 767 1923 171 40 9 chr6 23905339 23905686 -125611351 - ORR1C1 LTR MaLR -20 358 1 5 767 180 172 0 49 chr6 23905808 23905869 -125611168 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 767 348 24 0 0 chr6 23905930 23905971 -125611066 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 767 3038 51 33 0 chr6 23906840 23907234 -125609803 + RLTR10C LTR ERVK 1 407 -29 5 767 234 0 0 0 chr6 23907249 23907275 -125609762 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 767 368 149 14 29 chr6 23907276 23907345 -125609692 - RLTR41 LTR ERV1 -66 380 313 5 767 489 331 54 38 chr6 23907353 23907538 -125609499 - B4A SINE B4 -71 221 34 5 767 204 40 0 0 chr6 23907698 23907723 -125609314 + (CAA)n Simple_repeat Simple_repeat 2 26 0 5 767 8106 25 0 0 chr6 23908111 23909395 -125607642 - L1Md_T LINE L1 0 6582 5299 5 767 317 293 121 54 chr6 23909398 23909564 -125607473 + L1MCc LINE L1 99 275 -6148 5 767 251 332 140 5 chr6 23910120 23910535 -125606502 - L1MC3 LINE L1 0 7785 7315 5 767 917 133 243 6 chr6 23910648 23910829 -125606208 - URR1A DNA MER1_type -2 224 1 5 767 643 367 65 53 chr6 23910997 23911409 -125605628 - LTR16A1 LTR ERVL -39 417 1 5 767 3388 94 6 4 chr6 23912825 23913296 -125603741 - L1_Mus3 LINE L1 0 6638 6167 5 767 23 0 0 0 chr6 23914507 23914530 -125602507 + AT_rich Low_complexity Low_complexity 1 23 0 5 767 261 57 0 0 chr6 23918645 23918680 -125598357 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 767 282 106 0 0 chr6 23922091 23922138 -125594899 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 767 436 352 7 40 chr6 23922149 23922297 -125594740 - RSINE1 SINE B4 -15 150 8 5 767 389 219 17 9 chr6 23922606 23922721 -125594316 - Lx7 LINE L1 -3 7693 7578 5 767 258 32 0 0 chr6 23922760 23922791 -125594246 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 767 309 301 100 25 chr6 23923070 23923230 -125593807 + L1M5 LINE L1 5639 5810 -430 5 767 225 342 126 13 chr6 23923355 23923506 -125593531 + MLT1L LTR MaLR 202 369 -241 5 767 234 0 0 0 chr6 23924036 23924062 -125592975 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 767 340 238 28 14 chr6 23924222 23924318 -125592719 + MLT1D LTR MaLR 1 102 -403 5 767 28 48 0 0 chr6 23924475 23924517 -125592520 + AT_rich Low_complexity Low_complexity 1 42 0 5 767 788 147 44 94 chr6 23924532 23924735 -125592302 - Lx3B LINE L1 0 6973 6781 5 767 439 331 164 46 chr6 23925488 23925922 -125591115 - L2 LINE L2 -933 2486 2002 5 767 1066 278 75 28 chr6 23925937 23926299 -125590738 + MLT1B LTR MaLR 8 386 -4 5 767 240 158 0 0 chr6 23926540 23926597 -125590440 + GA-rich Low_complexity Low_complexity 2 58 0 5 767 6637 127 22 26 chr6 23926821 23928136 -125588901 - Lx LINE L1 -1 6653 5302 5 767 2589 48 9 12 chr6 23928136 23928470 -125588567 - L1Md_F3 LINE L1 -2 6582 6250 5 767 6281 159 21 122 chr6 23928470 23929468 -125587569 - Lx LINE L1 -582 5301 4480 5 767 261 281 83 11 chr6 23929807 23929987 -125587050 + L1MEc LINE L1 1118 1310 -5090 5 767 982 286 116 12 chr6 23930006 23930515 -125586522 + L1MC1 LINE L1 5751 6312 -21 5 767 373 389 10 49 chr6 23930603 23930806 -125586231 - B4 SINE B4 -6 286 92 5 767 716 230 77 34 chr6 23930827 23931034 -125586003 - B3 SINE B2 0 216 1 5 767 292 194 60 0 chr6 23931038 23931105 -125585932 - B4A SINE B4 -200 92 22 5 767 492 294 274 11 chr6 23932358 23932628 -125584409 - ORR1E LTR MaLR -21 358 18 5 767 320 0 25 0 chr6 23932631 23932671 -125584366 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 767 502 266 0 9 chr6 23932968 23933078 -125583959 - PB1D10 SINE Alu 0 117 9 6 767 949 39 15 0 chr6 23933082 23933212 -125583825 + (CA)n Simple_repeat Simple_repeat 2 133 0 6 767 717 287 34 14 chr6 23933244 23933541 -125583496 - L1M4c LINE L1 -3134 3248 2946 6 767 237 371 40 0 chr6 23933587 23933711 -125583326 + ORR1E LTR MaLR 1 129 -230 6 767 273 57 0 0 chr6 23933766 23933801 -125583236 + (ATG)n Simple_repeat Simple_repeat 1 35 0 6 767 246 279 26 18 chr6 23933801 23933914 -125583123 - L1M4c LINE L1 -4551 1833 1720 6 767 330 26 0 0 chr6 23933914 23933953 -125583084 + (TTA)n Simple_repeat Simple_repeat 1 39 0 6 767 5146 58 6 4 chr6 23933953 23934634 -125582403 - L1Md_F2 LINE L1 -23 6559 5878 6 767 434 293 134 21 chr6 23934830 23935217 -125581820 - L1M4c LINE L1 -4973 1411 981 6 767 336 159 177 0 chr6 23935345 23935458 -125581579 - Lx9 LINE L1 0 7644 7512 6 767 438 69 0 0 chr6 23935490 23935548 -125581489 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 767 666 138 0 0 chr6 23935544 23935653 -125581384 + (TA)n Simple_repeat Simple_repeat 1 109 0 6 767 24 32 0 0 chr6 23936621 23936652 -125580385 + AT_rich Low_complexity Low_complexity 1 31 0 6 767 235 374 57 38 chr6 23937090 23937301 -125579736 + L2a LINE L2 3120 3334 -92 6 767 233 247 51 25 chr6 23939071 23939150 -125577887 - MLT1A1 LTR MaLR -1 407 327 6 767 234 362 188 5 chr6 23939947 23940133 -125576904 + MLT1J LTR MaLR 100 319 -193 6 767 333 269 18 63 chr6 23943268 23943398 -125573639 + LTR16B1 LTR ERVL 336 478 -2 6 767 934 245 5 24 chr6 23943747 23943960 -125573077 - B3 SINE B2 -6 210 2 6 767 893 144 12 12 chr6 23944419 23944581 -125572456 + Lx7 LINE L1 7534 7695 -1 6 767 10036 81 20 4 chr6 23945180 23946684 -125570353 - MusHAL1 LINE L1 -532 2180 653 6 767 474 18 0 0 chr6 23946745 23946800 -125570237 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 767 360 0 0 0 chr6 23948427 23948467 -125568570 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 767 276 347 46 0 chr6 23948763 23948924 -125568113 + LTR16B1 LTR ERVL 284 476 -4 6 767 1349 97 16 0 chr6 23949565 23949750 -125567287 + B2_Mm2 SINE B2 1 188 -7 6 767 450 275 0 35 chr6 23949757 23949870 -125567167 + PB1D9 SINE Alu 5 113 -7 6 767 234 0 0 0 chr6 23949900 23949926 -125567111 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 767 450 0 0 0 chr6 23950215 23950265 -125566772 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 6 767 217 122 20 39 chr6 23951424 23951475 -125565562 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 6 767 189 0 0 0 chr6 23951852 23951873 -125565164 + (TATATG)n Simple_repeat Simple_repeat 5 25 0 6 767 584 306 53 51 chr6 23952467 23952919 -125564118 + RLTR11A2 LTR ERVK 1 504 -24 6 767 257 306 107 103 chr6 23953638 23953929 -125563108 + MLT1J LTR MaLR 217 508 -4 6 767 582 15 0 0 chr6 23954967 23955034 -125562003 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 767 1452 267 51 17 chr6 23956417 23956890 -125560147 + Lx7 LINE L1 6801 7289 -407 6 767 29052 82 62 8 chr6 23956940 23962742 -125554295 - L1Md_F2 LINE L1 0 6582 446 6 767 348 262 0 0 chr6 23962896 23962976 -125554061 + Lx8 LINE L1 7246 7325 -148 6 767 1344 276 48 8 chr6 23962981 23963332 -125553705 + ORR1D2 LTR MaLR 6 370 0 6 767 28 48 0 0 chr6 23963973 23964015 -125553022 + AT_rich Low_complexity Low_complexity 1 42 0 6 767 254 211 27 27 chr6 23964016 23964089 -125552948 - Lx7 LINE L1 -937 6759 6687 6 767 961 276 56 37 chr6 23964087 23964463 -125552574 + Lx7 LINE L1 7004 7386 -310 6 767 483 18 0 0 chr6 23964497 23964553 -125552484 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 767 5094 231 72 40 chr6 23964632 23965199 -125551838 + Lx7 LINE L1 6179 6793 -903 6 767 981 133 0 0 chr6 23965199 23965357 -125551680 + (TA)n Simple_repeat Simple_repeat 2 159 0 6 767 5094 231 72 40 chr6 23965357 23966087 -125550950 + Lx7 LINE L1 6794 7532 -164 6 767 3462 28 2 0 chr6 23966087 23966482 -125550555 + MTA_Mm LTR MaLR 1 396 0 6 767 396 0 0 0 chr6 23966483 23966527 -125550510 + (TCC)n Simple_repeat Simple_repeat 2 45 0 6 767 5094 231 72 40 chr6 23966527 23966696 -125550341 + Lx7 LINE L1 7533 7696 0 6 767 3694 200 42 26 chr6 23966744 23967761 -125549276 - Lx4B LINE L1 -3104 2773 1741 6 767 3447 161 22 59 chr6 23967759 23967866 -125549171 + Lx4B LINE L1 2764 2880 -2997 6 767 3874 109 203 93 chr6 23967866 23968372 -125548665 - RMER17A2 LTR ERVK 0 906 338 6 767 417 20 0 0 chr6 23968372 23968422 -125548615 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 767 3874 109 203 93 chr6 23968422 23968731 -125548306 - RMER17A2 LTR ERVK -569 337 1 6 767 3447 161 22 59 chr6 23968731 23968881 -125548156 + Lx4B LINE L1 2881 3023 -2854 6 767 790 98 30 0 chr6 23968881 23969013 -125548024 + L1_Mus3 LINE L1 6496 6631 -7 6 767 3447 161 22 59 chr6 23969013 23969030 -125548007 + Lx4B LINE L1 3024 3024 -2853 6 767 413 154 22 11 chr6 23969030 23969122 -125547915 + Lx2 LINE L1 6905 6997 0 6 767 3447 161 22 59 chr6 23969122 23969655 -125547382 + Lx4B LINE L1 3024 3543 -2334 6 767 4949 176 70 46 chr6 23969642 23971422 -125545615 + Lx4B LINE L1 5214 7058 0 6 767 23 54 0 0 chr6 23971433 23971470 -125545567 + AT_rich Low_complexity Low_complexity 1 37 0 6 767 297 242 16 32 chr6 23971478 23971602 -125545435 - Lx9 LINE L1 -3 7641 7520 6 767 531 112 0 0 chr6 23972508 23972597 -125544440 + (CA)n Simple_repeat Simple_repeat 2 90 0 6 767 1384 127 9 0 chr6 23972669 23972889 -125544148 - Lx5 LINE L1 0 6997 6776 6 767 333 127 53 53 chr6 23972889 23972964 -125544073 + Lx2 LINE L1 6694 6768 -229 6 767 414 0 0 0 chr6 23973314 23973360 -125543677 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 6 767 626 37 0 12 chr6 23973467 23973549 -125543488 + (TCC)n Simple_repeat Simple_repeat 1 81 0 6 767 4529 187 58 4 chr6 23973574 23974684 -125542353 - Lx5 LINE L1 -390 6660 5483 6 767 683 44 11 0 chr6 23974782 23974873 -125542164 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 6 767 30 0 0 0 chr6 23975749 23975779 -125541258 + AT_rich Low_complexity Low_complexity 1 30 0 6 767 24 67 0 0 chr6 23976746 23976791 -125540246 + AT_rich Low_complexity Low_complexity 1 45 0 6 767 206 312 134 16 chr6 23976802 23976929 -125540108 - L2a LINE L2 -5 3421 3280 6 767 483 292 97 32 chr6 23978005 23978479 -125538558 + Lx7 LINE L1 6959 7470 -3 6 767 734 314 85 16 chr6 23979208 23979583 -125537454 + RMER5 LTR ERV1 122 522 -12 6 767 23 33 0 0 chr6 23979636 23979666 -125537371 + AT_rich Low_complexity Low_complexity 1 30 0 6 767 196 374 80 10 chr6 23980363 23980463 -125536574 - L2b LINE L2 -18 3357 3251 6 767 186 43 0 0 chr6 23980485 23980508 -125536529 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 767 261 0 0 0 chr6 23981081 23981110 -125535927 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 767 417 39 0 0 chr6 23981110 23981160 -125535877 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 767 796 92 14 0 chr6 23981448 23981589 -125535448 + (GA)n Simple_repeat Simple_repeat 2 144 0 6 767 4181 145 30 40 chr6 23981676 23982416 -125534621 + Lx4B LINE L1 6327 7058 0 6 767 310 320 89 110 chr6 23982544 23982916 -125534121 - ORR1C1 LTR MaLR -7 371 8 6 767 443 257 5 79 chr6 23983098 23983271 -125533766 - Lx9 LINE L1 -526 7118 6822 6 767 319 330 29 65 chr6 23983321 23983557 -125533480 + Lx9 LINE L1 7273 7506 -138 6 767 210 37 0 0 chr6 23983557 23983584 -125533453 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 767 319 330 29 65 chr6 23983584 23983729 -125533308 + Lx9 LINE L1 7507 7640 -4 6 767 1090 92 7 0 chr6 23984377 23984529 -125532508 + B2_Mm1a SINE B2 2 154 -39 6 767 372 287 148 0 chr6 23984675 23984797 -125532240 - MTD LTR MaLR -68 351 212 6 767 661 288 65 74 chr6 23984767 23985125 -125531912 - ORR1C1-int LTR MaLR -629 629 380 6 95 13216 64 2 2 chr6 23985125 23987535 -125529502 - L1Md_F2 LINE L1 -67 6515 4105 6 768 246 167 0 20 chr6 23987542 23987591 -125529446 - ORR1C1-int LTR MaLR -968 290 243 6 768 3230 73 0 0 chr6 23987593 23988015 -125529022 - L1Md_T LINE L1 0 6582 6161 6 768 755 206 6 34 chr6 23988079 23988255 -125528782 - ORR1B1 LTR MaLR -183 211 41 6 768 564 285 62 28 chr6 23988253 23988430 -125528607 - MTD LTR MaLR -236 183 1 6 768 24 32 0 0 chr6 23988473 23988504 -125528533 + AT_rich Low_complexity Low_complexity 1 31 0 6 768 952 313 55 121 chr6 23988746 23989122 -125527915 - MT2A LTR ERVL -2 531 182 6 768 1085 128 0 6 chr6 23989122 23989303 -125527734 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 768 952 313 55 121 chr6 23989303 23989489 -125527548 - MT2A LTR ERVL -352 181 6 6 768 487 314 51 19 chr6 23990916 23991097 -125525940 + B4A SINE B4 32 218 -74 6 768 301 319 43 117 chr6 23991108 23991142 -125525895 + B4 SINE B4 70 220 -72 6 768 652 244 15 0 chr6 23991142 23991271 -125525766 + B1_Mur1 SINE Alu 13 143 -6 6 768 287 49 24 0 chr6 23991271 23991312 -125525725 + (CCAA)n Simple_repeat Simple_repeat 1 42 0 6 768 225 94 0 0 chr6 23991409 23991441 -125525596 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 768 734 274 160 0 chr6 23991466 23991779 -125525258 + Lx6 LINE L1 7035 7397 -63 6 768 7582 58 1 0 chr6 23991889 23992876 -125524161 - L1_Mus1 LINE L1 -1 6653 5587 6 768 579 262 49 108 chr6 23992925 23993314 -125523723 + RLTR12B LTR ERVK 132 497 -31 6 768 263 231 0 0 chr6 23993348 23993413 -125523624 + Lx6 LINE L1 7392 7456 -4 6 768 25 31 0 0 chr6 23993413 23993445 -125523592 + AT_rich Low_complexity Low_complexity 1 32 0 6 768 456 67 0 0 chr6 23993880 23993940 -125523097 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 768 657 58 0 0 chr6 23993940 23994026 -125523011 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 6 768 3138 268 118 14 chr6 23994278 23995392 -125521645 - Lx6 LINE L1 0 7460 6231 6 768 2581 88 16 60 chr6 23995588 23996022 -125521015 - RLTR9F LTR ERVK 0 415 1 6 768 2174 121 13 46 chr6 23997409 23997782 -125519255 - Lx3C LINE L1 0 6976 6616 6 768 495 0 0 0 chr6 23997788 23997843 -125519194 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 6 768 1308 223 150 64 chr6 23997843 23998342 -125518695 + RMER4B LTR ERVK 41 582 -3 6 768 615 129 119 119 chr6 23998348 23998507 -125518530 + RMER4A LTR ERVK 308 466 0 6 768 22 0 0 0 chr6 23998939 23998961 -125518076 + AT_rich Low_complexity Low_complexity 1 22 0 6 768 282 276 0 13 chr6 23999423 23999500 -125517537 + MLT1A1 LTR MaLR 321 396 -12 6 768 240 261 0 0 chr6 23999684 23999776 -125517261 + (TA)n Simple_repeat Simple_repeat 1 92 0 6 768 1105 179 9 0 chr6 23999777 24000000 -125517037 - L1_Mur3 LINE L1 -1173 4707 4483 7 768 3509 211 37 15 chr6 24000000 24000892 -125516145 - L1_Mur3 LINE L1 -1399 4481 3570 1 768 1080 293 83 16 chr6 24000888 24001311 -125515726 + Lx7 LINE L1 6794 7244 -452 2 768 342 0 0 0 chr6 24001385 24001423 -125515614 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 768 182 93 0 85 chr6 24001469 24001516 -125515521 + T-rich Low_complexity Low_complexity 1 43 0 4 768 366 245 1 34 chr6 24001767 24001874 -125515163 - B1_Mur1 SINE Alu 0 149 46 5 768 431 333 76 5 chr6 24002389 24002573 -125514464 + MER20 DNA MER1_type 1 197 -22 6 768 258 347 39 44 chr6 24003613 24003794 -125513243 + Lx8 LINE L1 7045 7224 -249 7 768 229 267 54 98 chr6 24003827 24003939 -125513098 + RMER15 LTR ERVL 361 467 -108 8 768 757 190 36 99 chr6 24003846 24003926 -125513111 + ID_B1 SINE B4 17 222 0 9 768 1094 50 0 0 chr6 24003926 24004066 -125512971 + B1_Mus2 SINE Alu 8 147 0 1 768 323 73 0 18 chr6 24004081 24004137 -125512900 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1 768 1738 148 27 164 chr6 24004930 24005374 -125511663 - ORR1C2 LTR MaLR 0 384 2 1 768 4444 218 69 36 chr6 24005375 24006462 -125510575 - ORR1C2-int LTR MaLR 0 1370 248 1 768 226 140 186 34 chr6 24006442 24006501 -125510536 - ORR1C2-int LTR MaLR -1302 68 1 1 768 26 74 0 0 chr6 24006677 24006731 -125510306 + AT_rich Low_complexity Low_complexity 1 54 0 1 768 4135 172 36 16 chr6 24007395 24008167 -125508870 + Lx3C LINE L1 6185 6972 -4 1 768 432 130 0 0 chr6 24008167 24008236 -125508801 + (TAA)n Simple_repeat Simple_repeat 1 69 0 1 768 327 167 0 0 chr6 24008275 24008341 -125508696 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 768 785 257 19 37 chr6 24008796 24009010 -125508027 + B3 SINE B2 1 210 -6 1 768 1047 221 14 9 chr6 24009100 24009310 -125507727 - B3 SINE B2 -5 211 1 1 768 24 53 0 0 chr6 24009582 24009620 -125507417 + AT_rich Low_complexity Low_complexity 1 38 0 1 768 444 262 207 0 chr6 24010247 24010484 -125506553 + Lx9 LINE L1 7359 7644 0 2 768 253 396 29 0 chr6 24010576 24010715 -125506322 - B1F1 SINE Alu -6 143 1 2 768 229 267 39 39 chr6 24010782 24010860 -125506177 - L1M3 LINE L1 -1193 4950 4873 2 768 921 179 144 6 chr6 24010875 24011055 -125505982 - MTD LTR MaLR -16 403 199 2 768 746 286 112 9 chr6 24011057 24011272 -125505765 - 7SK RNA RNA -94 237 1 2 768 728 265 116 5 chr6 24011271 24011461 -125505576 - MTD LTR MaLR -208 211 1 2 768 1046 243 110 11 chr6 24011462 24011836 -125505201 - L1M3 LINE L1 -1267 4873 4463 2 768 721 262 0 92 chr6 24011851 24012032 -125505005 - B3A SINE B2 -4 194 32 2 768 4189 27 0 0 chr6 24012032 24012514 -125504523 + LTRIS_Mm LTR ERV1 1 482 0 2 768 721 262 0 92 chr6 24012514 24012538 -125504499 - B3A SINE B2 -167 31 8 2 768 363 312 86 29 chr6 24012640 24012815 -125504222 + ORR1E LTR MaLR 13 197 -162 2 768 625 240 23 0 chr6 24012951 24013126 -125503911 - L1M3 LINE L1 -1787 4353 4175 2 768 38011 43 1 3 chr6 24013131 24019578 -125497459 - L1Md_T LINE L1 0 6585 58 2 768 483 323 61 58 chr6 24019578 24019920 -125497117 - L1M3 LINE L1 -1951 4192 3850 2 768 3012 262 89 46 chr6 24019966 24021024 -125496013 + Lx9 LINE L1 6522 7624 -20 2 768 1232 323 98 16 chr6 24021081 24021777 -125495260 + L1MA6 LINE L1 5318 6070 -230 3 768 24 32 0 0 chr6 24022042 24022073 -125494964 + AT_rich Low_complexity Low_complexity 1 31 0 3 768 186 355 126 9 chr6 24022127 24022238 -125494799 - MIRc SINE MIR -122 146 23 3 768 192 40 0 0 chr6 24023234 24023259 -125493778 + (A)n Simple_repeat Simple_repeat 1 25 0 3 768 484 311 124 37 chr6 24023601 24023955 -125493082 - L1MD LINE L1 -455 5787 5403 3 768 318 222 16 0 chr6 24023988 24024051 -125492986 - ID4 SINE ID -4 79 16 3 768 731 305 104 31 chr6 24024069 24024590 -125492447 - L1MD LINE L1 -746 5400 4842 3 768 1377 229 98 0 chr6 24024583 24024910 -125492127 + Lx6 LINE L1 7097 7455 -5 3 768 189 0 0 0 chr6 24024962 24024983 -125492054 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 768 315 0 0 0 chr6 24024983 24025017 -125492020 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 768 1582 216 11 40 chr6 24025439 24025786 -125491251 - ORR1B1 LTR MaLR -8 386 50 3 768 4930 167 63 97 chr6 24025812 24026975 -125490062 - ORR1B1-int LTR MaLR 0 1792 670 3 768 333 264 41 71 chr6 24026967 24027065 -125489972 - PB1D9 SINE Alu -23 97 3 4 768 353 238 12 70 chr6 24026988 24027074 -125489963 - MT2B LTR ERVL -363 238 158 4 768 1969 231 70 36 chr6 24027074 24027527 -125489510 + RMER1C Other Other 764 1222 -120 4 768 1036 124 6 6 chr6 24027527 24027706 -125489331 + (TTC)n Simple_repeat Simple_repeat 1 179 0 4 768 1969 231 70 36 chr6 24027706 24027810 -125489227 + RMER1C Other Other 1223 1339 -3 4 768 1447 208 68 62 chr6 24027891 24028261 -125488776 + ORR1C2 LTR MaLR 13 384 0 4 768 351 303 92 0 chr6 24028445 24028597 -125488440 + L1MA10 LINE L1 6155 6320 -14 4 768 345 377 44 4 chr6 24029026 24029255 -125487782 + L1MEc LINE L1 33 270 -6130 4 768 484 122 0 13 chr6 24029762 24029837 -125487200 + URR1B DNA MER1_type 148 221 -4 4 768 1999 143 101 8 chr6 24029921 24030287 -125486750 + RLTR9D LTR ERVK 1 400 -3 4 768 491 272 10 0 chr6 24030540 24030643 -125486394 - PB1D10 SINE Alu -8 109 6 4 768 387 314 0 54 chr6 24030547 24030658 -125486379 - ID_B1 SINE B4 -42 182 78 5 768 24 0 0 0 chr6 24030691 24030715 -125486322 + AT_rich Low_complexity Low_complexity 1 24 0 5 768 1442 259 28 55 chr6 24030725 24031088 -125485949 + MTEb LTR MaLR 5 357 -22 5 768 558 337 103 83 chr6 24031318 24031859 -125485178 - MLT1E3 LTR MaLR 0 624 73 5 768 400 323 81 31 chr6 24032104 24032264 -125484773 + B4A SINE B4 1 168 -124 5 768 810 186 0 0 chr6 24032864 24032966 -125484071 + polypyrimidine Low_complexity Low_complexity 73 174 0 5 768 1179 117 0 0 chr6 24032966 24033146 -125483891 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 768 810 186 0 0 chr6 24033146 24033215 -125483822 + polypyrimidine Low_complexity Low_complexity 4 72 0 5 768 502 272 70 12 chr6 24033215 24033386 -125483651 - Lx8 LINE L1 -115 7358 7178 5 768 308 299 15 13 chr6 24033438 24033549 -125483488 - Lx8 LINE L1 -435 7038 6904 5 768 6806 51 1 1 chr6 24034005 24034848 -125482189 + L1Md_F2 LINE L1 5737 6579 -3 5 768 2535 225 19 15 chr6 24035493 24036030 -125481007 + Lx6 LINE L1 6659 7197 -263 6 768 342 0 0 0 chr6 24036054 24036092 -125480945 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 6 768 287 296 26 60 chr6 24036132 24036283 -125480754 + Lx7 LINE L1 7190 7335 -361 6 768 26 64 0 0 chr6 24036473 24036520 -125480517 + AT_rich Low_complexity Low_complexity 1 47 0 6 768 2017 171 10 25 chr6 24036728 24037136 -125479901 - Lx LINE L1 -12 6642 6241 6 768 2443 92 26 3 chr6 24037147 24037494 -125479543 + L1_Mus4 LINE L1 5587 5941 -695 6 768 292 268 93 16 chr6 24039656 24039785 -125477252 + MER58B DNA MER1_type 203 341 0 6 768 330 26 0 0 chr6 24039907 24039946 -125477091 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 768 279 0 0 0 chr6 24039946 24039976 -125477061 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 768 404 410 25 5 chr6 24040052 24040253 -125476784 + MamRep1879 DNA hAT? 11 215 -1 6 768 327 25 0 0 chr6 24042455 24042495 -125474542 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 768 621 38 0 0 chr6 24042635 24042715 -125474322 + (TC)n Simple_repeat Simple_repeat 1 80 0 7 768 554 93 0 0 chr6 24042715 24042790 -125474247 - BC1_Mm scRNA scRNA -77 75 1 7 768 593 277 128 7 chr6 24043072 24043370 -125473667 - HAL1 LINE L1 -196 2311 1978 7 768 304 304 158 18 chr6 24043600 24043821 -125473216 - HAL1 LINE L1 -792 1715 1464 7 768 459 52 0 0 chr6 24044105 24044163 -125472874 + (TA)n Simple_repeat Simple_repeat 1 58 0 7 768 191 36 36 0 chr6 24044167 24044195 -125472842 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 768 607 319 102 4 chr6 24044197 24044433 -125472604 - B4A SINE B4 -20 272 14 7 768 206 167 0 23 chr6 24044496 24044539 -125472498 + A-rich Low_complexity Low_complexity 3 44 0 7 768 291 276 139 24 chr6 24044881 24045089 -125471948 - Lx9 LINE L1 -16 7628 7397 7 768 447 332 97 57 chr6 24045101 24045484 -125471553 - HAL1 LINE L1 -1322 1185 788 7 768 308 24 0 24 chr6 24045729 24045771 -125471266 + (TTA)n Simple_repeat Simple_repeat 2 42 0 7 768 24 32 0 0 chr6 24047854 24047885 -125469152 + AT_rich Low_complexity Low_complexity 1 31 0 8 768 893 248 59 0 chr6 24047892 24048094 -125468943 + B3 SINE B2 2 215 -1 8 768 798 263 64 102 chr6 24048249 24048622 -125468415 + MTE2a LTR MaLR 21 379 0 8 768 1346 143 13 18 chr6 24049146 24049373 -125467664 - URR1A DNA MER1_type 0 226 1 8 768 666 22 0 0 chr6 24052544 24052634 -125464403 + L1_Mus3 LINE L1 6546 6635 -3 8 768 1047 98 5 0 chr6 24053792 24053996 -125463041 + (TG)n Simple_repeat Simple_repeat 1 204 0 8 768 378 0 0 0 chr6 24055117 24055159 -125461878 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 768 485 250 146 15 chr6 24055292 24055422 -125461615 - B1_Mur2 SINE Alu 0 149 3 8 768 246 303 24 135 chr6 24055422 24055452 -125461585 - MT2B LTR ERVL -447 154 139 8 768 1960 161 60 3 chr6 24057213 24057392 -125459645 + ORR1C2 LTR MaLR 3 183 -201 8 768 208 26 49 49 chr6 24057392 24057433 -125459604 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 9 768 1960 161 60 3 chr6 24057433 24057603 -125459434 + ORR1C2 LTR MaLR 184 371 -13 8 768 246 276 33 99 chr6 24059427 24059608 -125457429 + L1MA6 LINE L1 5760 5928 -372 9 768 1299 189 0 0 chr6 24059911 24060128 -125456909 - Lx9 LINE L1 -680 6964 6748 9 768 807 180 124 8 chr6 24060127 24060384 -125456653 + Lx9 LINE L1 7352 7638 -6 9 768 440 287 16 0 chr6 24060387 24060516 -125456521 - L1_Mur3 LINE L1 -1007 4873 4743 9 768 523 264 30 30 chr6 24060516 24060684 -125456353 - L1_Mur3 LINE L1 -1244 4636 4469 9 768 356 377 76 18 chr6 24060689 24061032 -125456005 - L2 LINE L2 -882 2537 2175 9 768 203 394 53 0 chr6 24061034 24061166 -125455871 - MIRb SINE MIR -76 192 54 9 768 601 312 26 7 chr6 24061735 24061957 -125455080 + Lx8 LINE L1 7048 7282 -191 9 768 497 306 43 43 chr6 24062360 24062378 -125454659 - RSINE1 SINE B4 0 165 153 9 768 486 0 0 0 chr6 24062378 24062432 -125454605 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 768 497 306 43 43 chr6 24062432 24062577 -125454460 - RSINE1 SINE B4 -13 152 2 9 768 306 341 97 31 chr6 24062899 24063126 -125453911 + MER44A DNA MER2_type 98 339 0 1 768 322 39 39 0 chr6 24063655 24063707 -125453330 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 1 768 195 275 0 56 chr6 24063934 24063988 -125453049 + L2 LINE L2 2113 2163 -1256 1 768 1404 151 67 25 chr6 24064753 24065038 -125451999 - Lx5 LINE L1 0 7050 6754 1 768 359 324 52 0 chr6 24066228 24066364 -125450673 + Lx7 LINE L1 7139 7281 -415 1 768 246 238 0 0 chr6 24066413 24066476 -125450561 + T-rich Low_complexity Low_complexity 1 63 0 1 768 261 0 0 0 chr6 24066486 24066515 -125450522 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 768 369 0 0 0 chr6 24066515 24066555 -125450482 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 768 241 238 0 31 chr6 24066556 24066621 -125450416 + Lx7 LINE L1 7617 7679 -17 1 768 26 64 0 0 chr6 24066621 24066668 -125450369 + AT_rich Low_complexity Low_complexity 1 47 0 1 768 189 0 0 0 chr6 24067697 24067718 -125449319 + (CTTAG)n Simple_repeat Simple_repeat 5 25 0 1 768 357 24 0 0 chr6 24068816 24068858 -125448179 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 768 387 0 0 0 chr6 24068858 24068900 -125448137 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 768 528 250 22 14 chr6 24069029 24069167 -125447870 - MTE2a LTR MaLR -15 364 226 1 768 969 63 0 0 chr6 24069582 24069709 -125447328 - B1_Mus2 SINE Alu -18 129 3 1 768 402 285 66 20 chr6 24069851 24070048 -125446989 - L1M2 LINE L1 -578 5734 5529 1 768 259 242 15 0 chr6 24071242 24071308 -125445729 + GA-rich Low_complexity Low_complexity 2 68 0 1 768 1770 173 99 62 chr6 24071551 24072006 -125445031 + RMER6C LTR ERVK 219 690 0 1 768 21 0 0 0 chr6 24072253 24072274 -125444763 + AT_rich Low_complexity Low_complexity 1 21 0 1 768 545 285 101 70 chr6 24072393 24072808 -125444229 - HAL1 LINE L1 -1467 1040 613 1 768 21 57 0 0 chr6 24073086 24073121 -125443916 + AT_rich Low_complexity Low_complexity 1 35 0 1 768 341 321 9 26 chr6 24073387 24073502 -125443535 + PB1 SINE Alu 13 125 -2 1 768 672 315 123 83 chr6 24073605 24074402 -125442635 + Charlie7 DNA MER1_type 130 958 -1654 1 768 23 0 0 0 chr6 24074445 24074468 -125442569 + AT_rich Low_complexity Low_complexity 1 23 0 1 768 234 0 0 0 chr6 24075233 24075259 -125441778 + (T)n Simple_repeat Simple_repeat 1 26 0 1 768 274 362 0 0 chr6 24075259 24075272 -125441765 - RSINE1 SINE B4 -69 96 3 1 768 597 86 0 0 chr6 24075272 24075353 -125441684 - B2_Mm2 SINE B2 -113 82 2 1 768 438 20 0 0 chr6 24075513 24075564 -125441473 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 768 360 77 0 0 chr6 24075564 24075615 -125441422 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 768 229 253 93 21 chr6 24075615 24075712 -125441325 + L1MEe LINE L1 79 182 -4672 1 768 5277 83 65 11 chr6 24077040 24077803 -125439234 - L1_Mus3 LINE L1 -3 6635 5831 1 768 780 307 92 37 chr6 24078181 24078757 -125438280 - L1_Rod LINE L1 -11 5836 5298 1 768 273 335 120 47 chr6 24078934 24079210 -125437827 - L2a LINE L2 -7 3419 3124 1 768 396 0 0 0 chr6 24079368 24079412 -125437625 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 768 324 0 0 0 chr6 24079622 24079658 -125437379 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 768 703 312 33 24 chr6 24079675 24079888 -125437149 + B3A SINE B2 1 215 -1 1 768 849 271 98 15 chr6 24079895 24080161 -125436876 + Lx8 LINE L1 6196 6483 -990 1 768 656 94 9 0 chr6 24080162 24080268 -125436769 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1 768 1152 82 0 0 chr6 24080277 24080423 -125436614 - B1_Mus2 SINE Alu 0 147 2 1 768 2015 259 78 139 chr6 24080425 24080816 -125436221 + Lx8 LINE L1 6471 6866 -607 1 768 192 77 0 0 chr6 24080816 24080842 -125436195 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 768 2015 259 78 139 chr6 24080842 24081195 -125435842 + Lx8 LINE L1 6867 7120 -353 1 768 417 20 0 0 chr6 24081195 24081245 -125435792 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 768 2015 259 78 139 chr6 24081245 24081567 -125435470 + Lx8 LINE L1 7121 7472 -1 1 768 180 341 0 118 chr6 24082091 24082184 -125434853 - L2c LINE L2 -22 3365 3284 1 768 2981 32 62 3 chr6 24085697 24086071 -125430966 + MTA_Mm LTR MaLR 1 396 0 1 768 2064 64 4 0 chr6 24087860 24088126 -125428911 - L1Md_F2 LINE L1 -12 6570 6304 1 768 506 163 0 10 chr6 24090774 24090873 -125426164 + CT-rich Low_complexity Low_complexity 3 100 0 1 768 1693 37 0 44 chr6 24090971 24091197 -125425840 - L1Md_F3 LINE L1 -11 6573 6358 1 768 210 397 8 8 chr6 24092277 24092394 -125424643 + L2c LINE L2 3098 3214 -173 1 768 3470 72 4 39 chr6 24092703 24093195 -125423842 + L1_Mus2 LINE L1 6082 6556 -10 1 768 243 0 0 0 chr6 24093195 24093222 -125423815 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 768 3424 23 5 0 chr6 24093299 24093693 -125423344 + MTA_Mm LTR MaLR 1 396 0 1 768 450 36 0 0 chr6 24093899 24093955 -125423082 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 768 735 329 24 12 chr6 24094232 24094478 -125422559 + MER44B DNA MER2_type 93 341 -209 1 768 308 283 20 29 chr6 24094540 24094642 -125422395 + MER44B DNA MER2_type 450 550 0 1 768 662 222 22 0 chr6 24094712 24094847 -125422190 - B1_Mur2 SINE Alu -10 139 2 1 768 195 69 0 0 chr6 24094967 24094996 -125422041 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 768 457 338 40 0 chr6 24095005 24095156 -125421881 - MER58A DNA MER1_type -66 158 2 1 768 493 291 77 50 chr6 24095331 24095512 -125421525 + ID_B1 SINE B4 1 186 -38 1 768 597 28 0 0 chr6 24095535 24095606 -125421431 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 1 768 181 311 16 16 chr6 24095771 24095833 -125421204 + MIRc SINE MIR 45 106 -162 1 768 438 353 16 5 chr6 24095968 24096159 -125420878 + L2a LINE L2 2024 2216 -1203 1 768 227 299 0 56 chr6 24096252 24096323 -125420714 - MLT1H1 LTR MaLR -300 255 189 1 768 217 158 35 17 chr6 24096360 24096418 -125420619 + CT-rich Low_complexity Low_complexity 2 60 0 1 768 741 79 0 0 chr6 24096418 24096519 -125420518 + (TCCC)n Simple_repeat Simple_repeat 4 104 0 1 768 435 238 16 24 chr6 24096565 24096690 -125420347 - B3 SINE B2 -87 129 6 1 768 564 290 35 78 chr6 24096690 24097034 -125420003 + L2a LINE L2 2256 2584 -835 1 768 216 240 138 94 chr6 24097133 24097271 -125419766 + L2a LINE L2 2737 2880 -539 1 768 231 217 0 0 chr6 24097620 24097680 -125419357 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 768 752 305 37 4 chr6 24097703 24097973 -125419064 - B4A SINE B4 -9 283 5 1 768 211 243 229 0 chr6 24098099 24098169 -125418868 + L2a LINE L2 3341 3426 0 1 768 1206 299 34 24 chr6 24098643 24099007 -125418030 + MTE2a LTR MaLR 35 402 -17 1 768 462 299 0 39 chr6 24102743 24102896 -125414141 + B1F2 SINE Alu 1 147 -2 1 768 250 335 72 49 chr6 24103170 24103393 -125413644 + Charlie8 DNA MER1_type 91 318 -12 1 768 298 316 71 0 chr6 24103505 24103603 -125413434 + MER5A1 DNA MER1_type 29 133 -33 1 768 945 302 30 7 chr6 24105065 24105335 -125411702 - B4A SINE B4 -16 276 1 1 768 3776 2 0 0 chr6 24105360 24105781 -125411256 + L1Md_A LINE L1 5166 5586 -297 1 768 9026 2 0 0 chr6 24105781 24106777 -125410260 + L1Md_A LINE L1 5587 6582 0 1 768 25 0 0 0 chr6 24107129 24107154 -125409883 + AT_rich Low_complexity Low_complexity 1 25 0 1 768 320 254 98 41 chr6 24108555 24108678 -125408359 + LTR69 LTR ERVL 1 130 -458 1 768 522 316 61 61 chr6 24108772 24109001 -125408036 + LTR69 LTR ERVL 352 580 -8 1 768 27 29 0 0 chr6 24109241 24109275 -125407762 + AT_rich Low_complexity Low_complexity 1 34 0 1 768 351 0 0 0 chr6 24109388 24109427 -125407610 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 768 477 0 0 0 chr6 24109427 24109479 -125407558 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 768 1312 235 34 48 chr6 24109479 24109836 -125407201 + Lx9 LINE L1 7086 7437 -207 1 768 3668 37 13 11 chr6 24110862 24111322 -125405715 + L1Md_F2 LINE L1 6116 6576 -6 1 768 23 0 0 0 chr6 24111327 24111350 -125405687 + AT_rich Low_complexity Low_complexity 1 23 0 1 768 1563 22 0 21 chr6 24111523 24111710 -125405327 + B2_Mm1a SINE B2 2 184 -9 1 768 222 37 0 0 chr6 24113653 24113680 -125403357 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 768 317 285 250 23 chr6 24113895 24114071 -125402966 - ID_B1 SINE B4 -4 220 5 1 768 25 0 0 0 chr6 24114344 24114369 -125402668 + AT_rich Low_complexity Low_complexity 1 25 0 1 768 234 266 103 16 chr6 24114642 24114768 -125402269 + Charlie9 DNA MER1_type 2460 2596 -161 1 768 212 367 15 52 chr6 24115342 24115477 -125401560 + MIRb SINE MIR 117 246 -22 1 768 204 40 0 0 chr6 24115911 24115936 -125401101 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1 768 376 287 131 11 chr6 24116952 24117128 -125399909 - MIR SINE MIR -63 199 3 1 769 429 20 0 0 chr6 24118308 24118358 -125398679 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 769 180 0 0 0 chr6 24118375 24118395 -125398642 + (TTCC)n Simple_repeat Simple_repeat 2 21 0 1 769 320 317 55 46 chr6 24118395 24118613 -125398424 - BGLII_B LTR ERVK -174 267 48 1 769 21 0 0 0 chr6 24120446 24120467 -125396570 + AT_rich Low_complexity Low_complexity 1 21 0 1 769 374 238 117 47 chr6 24120552 24120680 -125396357 + B1F SINE Alu 13 149 0 1 769 263 372 13 0 chr6 24120681 24120759 -125396278 + ID2 SINE ID 1 79 -4 1 769 260 259 156 56 chr6 24120817 24120907 -125396130 - MIRc SINE MIR -133 135 37 1 769 236 198 118 169 chr6 24122107 24122145 -125394892 - B2_Mm2 SINE B2 -5 190 7 1 769 413 400 0 39 chr6 24122145 24122301 -125394736 - RSINE1 SINE B4 -8 157 8 1 769 374 248 42 42 chr6 24122533 24122653 -125394384 + PB1 SINE Alu 4 127 0 1 769 24 0 0 0 chr6 24123459 24123483 -125393554 + AT_rich Low_complexity Low_complexity 1 24 0 1 769 430 243 206 16 chr6 24123619 24123866 -125393171 - Lx9 LINE L1 -8 7636 7343 1 769 679 149 22 0 chr6 24123866 24124000 -125393037 + CT-rich Low_complexity Low_complexity 4 140 0 1 769 1391 266 35 42 chr6 24124000 24124521 -125392516 - Lx9 LINE L1 -285 7359 6843 1 769 261 0 0 0 chr6 24124677 24124706 -125392331 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 1 769 232 312 0 94 chr6 24125864 24125949 -125391088 + MLT1A0 LTR MaLR 19 95 -270 2 769 730 293 16 16 chr6 24127108 24127351 -125389686 + Lx8 LINE L1 6197 6439 -1034 2 769 26 0 0 0 chr6 24128139 24128165 -125388872 + AT_rich Low_complexity Low_complexity 1 26 0 2 769 1173 217 25 65 chr6 24129976 24130301 -125386736 + Lx2B LINE L1 6686 6997 -3 2 769 242 294 53 35 chr6 24130605 24130718 -125386319 + L1M4 LINE L1 4880 4994 -1152 2 769 955 269 159 9 chr6 24131420 24131746 -125385291 + MTE2b LTR MaLR 1 375 -4 2 769 24 0 0 0 chr6 24132021 24132045 -125384992 + AT_rich Low_complexity Low_complexity 1 24 0 2 769 492 18 0 0 chr6 24134144 24134201 -125382836 + (TCC)n Simple_repeat Simple_repeat 3 59 0 2 769 419 298 0 0 chr6 24134485 24134579 -125382458 - B4A SINE B4 -198 94 1 2 769 250 264 0 19 chr6 24134834 24134888 -125382149 - B4A SINE B4 -239 53 1 2 769 220 370 0 0 chr6 24136611 24136684 -125380353 + MIR SINE MIR 41 113 -149 2 769 328 355 65 28 chr6 24137452 24137945 -125379092 - L1ME1 LINE L1 -293 5886 5376 2 769 414 0 0 0 chr6 24138179 24138225 -125378812 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 769 646 158 70 62 chr6 24139757 24139885 -125377152 + B3 SINE B2 1 129 -87 2 769 387 41 0 0 chr6 24139922 24139971 -125377066 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 2 769 626 208 30 29 chr6 24140051 24140244 -125376793 - B3A SINE B2 -10 185 1 2 769 493 384 41 58 chr6 24140364 24140729 -125376308 + ORR1E LTR MaLR 1 359 0 2 769 504 0 0 0 chr6 24140864 24140920 -125376117 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 769 421 218 23 0 chr6 24140920 24141007 -125376030 - Lx9 LINE L1 -194 7450 7362 2 769 1194 198 46 15 chr6 24141021 24141283 -125375754 + Lx9 LINE L1 7020 7289 -355 2 769 1572 39 0 5 chr6 24141734 24141938 -125375099 + L1Md_F2 LINE L1 6378 6580 -2 2 769 22 0 0 0 chr6 24142196 24142218 -125374819 + AT_rich Low_complexity Low_complexity 1 22 0 2 769 708 259 52 38 chr6 24143245 24143458 -125373579 - MLT2B2 LTR ERVL 0 562 347 2 769 998 303 78 15 chr6 24143465 24144127 -125372910 - ERVL-int LTR ERVL -215 5542 4797 2 769 1337 101 5 0 chr6 24144124 24144323 -125372714 + ETnERV2-int LTR ERVK 2045 2244 -5162 2 769 5238 127 31 32 chr6 24144314 24146415 -125370622 + ETnERV2-int LTR ERVK 1730 3402 -2004 2 769 6033 141 9 22 chr6 24146434 24147529 -125369508 + ETnERV2-int LTR ERVK 6256 7208 -198 2 769 488 263 258 7 chr6 24147529 24147828 -125369209 + RLTR13D6 LTR ERVK 158 531 -371 2 769 478 53 25 74 chr6 24147831 24147912 -125369125 + ETnERV2-int LTR ERVK 7327 7403 -3 2 769 1432 128 53 111 chr6 24147914 24148256 -125368781 + RLTRETN_Mm LTR ERVK 1 322 0 2 769 647 269 75 54 chr6 24148289 24148584 -125368453 - ERVL-int LTR ERVL -932 4825 4525 2 769 185 163 20 0 chr6 24148633 24148682 -125368355 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2 769 270 0 0 0 chr6 24148734 24148764 -125368273 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 769 450 331 6 105 chr6 24148765 24148880 -125368157 - B3 SINE B2 -50 166 51 2 769 3705 58 0 17 chr6 24148880 24149357 -125367680 + L1_Mus1 LINE L1 6099 6567 0 2 769 450 331 6 105 chr6 24149357 24149383 -125367654 - B3 SINE B2 -166 50 34 2 769 1134 93 0 0 chr6 24149383 24149544 -125367493 + (GGAAA)n Simple_repeat Simple_repeat 4 164 0 2 769 450 331 6 105 chr6 24149544 24149573 -125367464 - B3 SINE B2 -183 33 12 2 769 22 35 0 0 chr6 24149970 24149999 -125367038 + AT_rich Low_complexity Low_complexity 1 29 0 2 769 294 263 88 0 chr6 24150303 24150360 -125366677 - ID4 SINE ID -16 67 6 2 769 198 0 0 0 chr6 24150737 24150759 -125366278 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 2 769 400 224 20 53 chr6 24152539 24152690 -125364347 + C-rich Low_complexity Low_complexity 3 148 0 2 769 348 209 204 26 chr6 24152691 24152804 -125364233 - Lx6 LINE L1 -11 7449 7317 2 769 816 199 77 25 chr6 24152795 24152991 -125364046 + RMER1B Other Other 861 1066 0 2 769 6490 221 62 68 chr6 24153013 24153368 -125363669 - Lx7 LINE L1 -161 7535 7245 2 769 402 69 0 0 chr6 24153368 24153426 -125363611 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 769 6490 221 62 68 chr6 24153426 24153589 -125363448 - Lx7 LINE L1 -452 7244 7070 2 769 258 32 0 0 chr6 24153589 24153620 -125363417 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 769 6490 221 62 68 chr6 24153620 24153964 -125363073 - Lx7 LINE L1 -627 7069 6670 2 769 2275 93 25 3 chr6 24153964 24154286 -125362751 + ORR1A4 LTR MaLR 1 329 0 2 769 9461 176 120 28 chr6 24154286 24157230 -125359807 - Lx7 LINE L1 -1027 6669 3449 2 769 267 31 0 0 chr6 24157243 24157275 -125359762 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2 769 234 336 9 9 chr6 24157294 24157399 -125359638 + L2a LINE L2 3029 3133 -293 2 769 818 317 60 11 chr6 24157924 24158192 -125358845 - B4 SINE B4 -9 283 3 2 769 231 36 0 0 chr6 24159129 24159157 -125357880 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2 769 292 309 62 21 chr6 24159922 24160018 -125357019 - MER5B DNA MER1_type -73 105 6 2 769 24 32 0 0 chr6 24160220 24160251 -125356786 + AT_rich Low_complexity Low_complexity 1 31 0 2 769 22 0 0 0 chr6 24161303 24161325 -125355712 + AT_rich Low_complexity Low_complexity 1 22 0 2 769 1910 150 34 9 chr6 24161540 24161890 -125355147 - RLTR15 LTR ERVK 0 359 1 2 769 430 334 91 83 chr6 24162227 24162612 -125354425 - MLT1D LTR MaLR -93 412 25 2 769 180 0 0 0 chr6 24162681 24162701 -125354336 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 769 491 312 90 12 chr6 24162724 24162980 -125354057 - B4A SINE B4 -15 277 2 2 769 200 268 0 35 chr6 24163057 24163115 -125353922 + MIRb SINE MIR 155 210 -58 2 769 2095 139 9 6 chr6 24163950 24164275 -125352762 + ORR1A3 LTR MaLR 1 326 0 2 769 343 198 95 86 chr6 24165249 24165272 -125351765 + MT2B LTR ERVL 135 158 -443 2 769 591 212 63 35 chr6 24165272 24165414 -125351623 + B1_Mur3 SINE Alu 1 146 -3 2 769 23 0 0 0 chr6 24165474 24165497 -125351540 + AT_rich Low_complexity Low_complexity 1 23 0 2 769 249 324 45 87 chr6 24165882 24166146 -125350891 - RLTR18B LTR ERVK -209 303 51 2 769 3845 192 22 17 chr6 24166363 24167174 -125349863 - Lx3C LINE L1 -2 6974 6160 2 769 4233 140 13 19 chr6 24167180 24168227 -125348810 + Lx2B LINE L1 5111 6147 -853 2 769 1445 107 0 5 chr6 24168310 24168526 -125348511 + L1_Mus4 LINE L1 6413 6627 -9 2 769 201 143 0 0 chr6 24168750 24168785 -125348252 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 769 459 0 0 0 chr6 24169271 24169322 -125347715 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 769 387 0 0 0 chr6 24169901 24169944 -125347093 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 769 468 0 0 0 chr6 24170461 24170513 -125346524 + (CAAAA)n Simple_repeat Simple_repeat 3 54 0 2 769 22 56 0 0 chr6 24170961 24170997 -125346040 + AT_rich Low_complexity Low_complexity 1 36 0 2 769 640 246 74 39 chr6 24171077 24171280 -125345757 - B3 SINE B2 -6 210 1 2 769 226 277 95 35 chr6 24171297 24171413 -125345624 - MIRc SINE MIR -53 215 93 2 769 516 130 0 0 chr6 24172406 24172498 -125344539 + (CA)n Simple_repeat Simple_repeat 2 93 0 2 769 33731 44 7 10 chr6 24172693 24177876 -125339161 + L1Md_F2 LINE L1 420 5586 -297 2 769 7913 53 6 0 chr6 24177876 24178864 -125338173 + L1Md_F2 LINE L1 5587 6580 -2 2 769 2251 62 0 0 chr6 24178864 24179156 -125337881 + L1Md_F2 LINE L1 5294 5585 -298 2 769 7476 65 9 4 chr6 24179157 24180129 -125336908 + L1Md_F2 LINE L1 5587 6563 -19 2 769 371 55 0 18 chr6 24180133 24180188 -125336849 + (TAA)n Simple_repeat Simple_repeat 2 55 0 2 769 249 264 60 60 chr6 24180237 24180265 -125336772 - MLT2D LTR ERVL -6 550 523 2 769 300 27 0 0 chr6 24180265 24180302 -125336735 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 769 444 335 42 48 chr6 24180302 24180623 -125336414 - MLT2D LTR ERVL -34 522 25 2 769 432 192 83 15 chr6 24180720 24180852 -125336185 - ERVL-int LTR ERVL -114 5643 5503 2 769 26 64 0 0 chr6 24181281 24181328 -125335709 + AT_rich Low_complexity Low_complexity 1 47 0 2 769 212 59 0 29 chr6 24181328 24181363 -125335674 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 2 769 409 243 144 0 chr6 24181395 24181506 -125335531 - ID_B1 SINE B4 -12 212 86 2 769 23 0 0 0 chr6 24181578 24181601 -125335436 + AT_rich Low_complexity Low_complexity 1 23 0 2 769 320 111 19 0 chr6 24182915 24182969 -125334068 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2 769 345 24 0 0 chr6 24183365 24183407 -125333630 + (TAA)n Simple_repeat Simple_repeat 3 44 0 2 769 213 65 0 0 chr6 24184636 24184667 -125332370 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2 769 252 0 0 0 chr6 24185756 24185784 -125331253 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 769 267 31 0 0 chr6 24185784 24185816 -125331221 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 769 298 305 116 8 chr6 24186140 24186269 -125330768 + MLT1A1 LTR MaLR 42 184 -224 2 769 671 268 58 37 chr6 24186444 24186634 -125330403 - B4A SINE B4 -15 277 84 2 769 885 165 118 51 chr6 24186663 24186886 -125330151 - ORR1A4 LTR MaLR 0 329 1 2 769 438 36 0 0 chr6 24187515 24187571 -125329466 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 769 207 0 0 0 chr6 24187571 24187594 -125329443 + (TAG)n Simple_repeat Simple_repeat 2 24 0 2 769 198 91 0 0 chr6 24187938 24187971 -125329066 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 2 769 280 357 57 74 chr6 24188114 24188344 -125328693 + MLT1J LTR MaLR 6 231 -281 2 769 431 319 222 14 chr6 24188676 24188902 -125328135 + B4 SINE B4 2 274 -18 2 769 331 413 36 31 chr6 24188951 24189176 -125327861 + L1MEg LINE L1 242 467 -5617 2 769 605 232 126 26 chr6 24189291 24189481 -125327556 + B3 SINE B2 1 209 -7 2 769 682 290 4 78 chr6 24189995 24190227 -125326810 - B3 SINE B2 -1 215 1 2 769 382 280 8 0 chr6 24190922 24191047 -125325990 - L1MA4A LINE L1 -367 5936 5811 2 769 24 32 0 0 chr6 24191114 24191145 -125325892 + AT_rich Low_complexity Low_complexity 1 31 0 2 769 1234 265 42 40 chr6 24192338 24192793 -125324244 + Lx9 LINE L1 7010 7465 -179 2 769 264 170 0 0 chr6 24192796 24192849 -125324188 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 769 490 329 43 37 chr6 24193901 24194062 -125322975 + RSINE1 SINE B4 4 165 0 2 769 324 0 0 0 chr6 24194068 24194104 -125322933 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 769 23 0 0 0 chr6 24194112 24194135 -125322902 + AT_rich Low_complexity Low_complexity 1 23 0 3 769 495 248 50 57 chr6 24194239 24194380 -125322657 + B1_Mur2 SINE Alu 1 140 -9 3 769 238 192 19 0 chr6 24194980 24195032 -125322005 - 4.5SRNA scRNA scRNA -30 64 12 3 769 1377 285 95 26 chr6 24195034 24195214 -125321823 + Lx8 LINE L1 6059 6265 -1208 3 769 181 0 33 33 chr6 24195214 24195244 -125321793 + (TAA)n Simple_repeat Simple_repeat 3 32 0 3 769 1377 285 95 26 chr6 24195244 24195629 -125321408 + Lx8 LINE L1 6266 6662 -811 3 769 5248 166 107 33 chr6 24195801 24196698 -125320339 + Lx5 LINE L1 907 1907 -3970 3 769 219 36 0 0 chr6 24196698 24196726 -125320311 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 769 5248 178 46 33 chr6 24196726 24196859 -125320178 + Lx5 LINE L1 1908 2048 -3829 3 769 432 0 0 0 chr6 24196859 24196907 -125320130 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 769 5248 178 46 33 chr6 24196907 24197391 -125319646 + Lx5 LINE L1 2049 2510 -3367 3 769 1572 118 76 0 chr6 24197391 24197653 -125319384 + Lx LINE L1 6373 6654 0 3 769 5592 169 28 5 chr6 24197655 24199323 -125317714 + Lx5 LINE L1 4854 6568 -482 3 769 1837 196 15 61 chr6 24199323 24199719 -125317318 - RMER13B LTR ERVK 0 908 531 3 769 6656 124 28 12 chr6 24199749 24200768 -125316269 + Lx2A LINE L1 5936 6976 -32 3 769 3079 47 42 0 chr6 24200768 24201148 -125315889 + MTA_Mm LTR MaLR 1 396 0 3 769 6656 124 28 12 chr6 24201148 24201174 -125315863 + Lx2A LINE L1 6977 6997 -11 3 769 869 113 47 54 chr6 24203346 24203495 -125313542 - B1_Mus1 SINE Alu 0 148 1 3 769 593 300 80 34 chr6 24203505 24203743 -125313294 - MER74A LTR ERVL -305 253 5 3 769 572 189 88 15 chr6 24204071 24204222 -125312815 - Lx9 LINE L1 -1 7643 7478 3 769 297 0 0 0 chr6 24204222 24204255 -125312782 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 769 384 22 0 0 chr6 24204255 24204299 -125312738 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 769 572 189 88 15 chr6 24204299 24204350 -125312687 - Lx9 LINE L1 -167 7477 7426 3 769 2423 142 47 9 chr6 24204531 24204978 -125312059 + Lx LINE L1 6191 6654 0 3 769 951 98 0 32 chr6 24205105 24205263 -125311774 + L1Md_F2 LINE L1 6430 6582 0 3 769 945 289 63 19 chr6 24206140 24206457 -125310580 + Lx8 LINE L1 6392 6722 -751 3 769 567 306 5 58 chr6 24206494 24206717 -125310320 + B4A SINE B4 82 284 -8 3 769 1655 287 61 46 chr6 24206834 24207576 -125309461 + Lx8 LINE L1 6720 7472 -1 3 769 279 113 0 0 chr6 24207868 24207921 -125309116 + (T)n Simple_repeat Simple_repeat 1 53 0 3 769 17337 56 0 3 chr6 24207962 24210340 -125306697 + L1_Mm LINE L1 1366 3737 -2146 3 769 1288 164 27 0 chr6 24210836 24211055 -125305982 - URR1B DNA MER1_type 0 225 1 3 769 391 281 125 35 chr6 24212225 24212369 -125304668 + B2_Mm2 SINE B2 5 161 -34 3 769 491 333 94 61 chr6 24212530 24213106 -125303931 - L1MC5 LINE L1 -353 7608 7014 3 769 788 166 58 0 chr6 24213182 24213321 -125303716 - B1_Mus1 SINE Alu -1 147 1 3 769 1724 196 84 62 chr6 24213551 24214084 -125302953 - Lx9 LINE L1 -128 7516 6972 3 769 297 346 15 75 chr6 24215253 24215453 -125301584 + MLT1D LTR MaLR 23 210 -295 3 769 826 220 46 5 chr6 24215557 24215776 -125301261 + Lx9 LINE L1 7283 7510 -134 3 769 604 271 0 15 chr6 24215792 24215923 -125301114 + RSINE1 SINE B4 37 165 0 3 769 288 244 8 16 chr6 24215923 24216052 -125300985 + (CA)n Simple_repeat Simple_repeat 1 128 0 3 769 282 344 110 43 chr6 24216104 24216405 -125300632 + MLT1D LTR MaLR 177 497 -8 3 769 22 0 0 0 chr6 24217270 24217292 -125299745 + AT_rich Low_complexity Low_complexity 1 22 0 3 769 379 315 81 0 chr6 24217430 24217541 -125299496 + B1F SINE Alu 1 120 -29 3 769 432 240 6 17 chr6 24218605 24218716 -125298321 - PB1D9 SINE Alu 0 149 25 3 769 212 280 20 10 chr6 24218811 24218912 -125298125 + (TA)n Simple_repeat Simple_repeat 1 102 0 3 769 213 39 0 0 chr6 24219058 24219084 -125297953 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 3 769 2524 296 52 23 chr6 24219106 24220069 -125296968 - Lx8 LINE L1 -93 7380 6390 3 769 1005 201 254 47 chr6 24220097 24220483 -125296554 - Lx5 LINE L1 -3 7047 6582 3 769 1543 195 16 0 chr6 24220481 24220789 -125296248 + Lx5 LINE L1 6252 6564 -486 3 769 265 270 0 0 chr6 24220788 24220851 -125296186 - Lx8 LINE L1 -1084 6389 6327 3 769 532 277 52 26 chr6 24221522 24221715 -125295322 - B3A SINE B2 0 198 1 3 769 192 424 7 34 chr6 24223675 24223824 -125293213 - MIRb SINE MIR -53 215 71 3 769 955 30 75 0 chr6 24224674 24224808 -125292229 - L1Md_F2 LINE L1 0 6582 6439 3 769 353 292 132 9 chr6 24224943 24225057 -125291980 - B1F SINE Alu -3 146 19 3 769 494 260 71 0 chr6 24225524 24225678 -125291359 + L1MC1 LINE L1 6017 6181 -152 3 769 1005 274 44 61 chr6 24225822 24226066 -125290971 + MTEa LTR MaLR 13 246 -133 3 769 2891 49 7 86 chr6 24226066 24226487 -125290550 + RLTR10 LTR ERVK 1 388 -2 3 769 1005 274 44 61 chr6 24226487 24226603 -125290434 + MTEa LTR MaLR 247 367 -12 3 769 279 312 54 15 chr6 24226645 24226775 -125290262 + Tigger5 DNA MER2_type 96 230 -2176 3 769 22 35 0 0 chr6 24226812 24226841 -125290196 + AT_rich Low_complexity Low_complexity 1 29 0 3 769 189 74 0 0 chr6 24226927 24226954 -125290083 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 769 624 240 8 30 chr6 24227404 24227537 -125289500 - B1_Mur4 SINE Alu -9 141 12 3 769 495 69 0 0 chr6 24228349 24228421 -125288616 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 769 234 0 0 0 chr6 24228786 24228812 -125288225 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 769 247 303 49 141 chr6 24228874 24229016 -125288021 + MIR SINE MIR 72 200 -62 3 769 36265 29 0 0 chr6 24229364 24235767 -125281270 - L1Md_T LINE L1 0 6585 86 3 769 22 35 0 0 chr6 24235833 24235862 -125281175 + AT_rich Low_complexity Low_complexity 1 29 0 3 769 218 185 0 36 chr6 24236295 24236351 -125280686 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 3 769 465 288 159 62 chr6 24237154 24237506 -125279531 + RMER13A LTR ERVK 21 406 -454 3 769 342 329 49 49 chr6 24237977 24238121 -125278916 - B4A SINE B4 -73 219 76 3 769 362 289 0 11 chr6 24238137 24238228 -125278809 - B4 SINE B4 -199 93 4 3 769 339 25 0 0 chr6 24238359 24238399 -125278638 + (CATA)n Simple_repeat Simple_repeat 4 43 0 3 769 880 170 22 6 chr6 24238402 24238585 -125278452 - Lx9 LINE L1 -179 7465 7280 3 769 927 178 32 0 chr6 24238584 24238769 -125278268 + Lx9 LINE L1 7035 7225 -419 3 769 519 159 0 0 chr6 24238921 24239053 -125277984 + T-rich Low_complexity Low_complexity 3 134 0 3 769 1203 48 0 0 chr6 24239056 24239202 -125277835 - B1_Mus2 SINE Alu -1 146 1 3 769 345 258 15 22 chr6 24239288 24239416 -125277621 - B2_Mm2 SINE B2 -88 128 1 3 769 565 277 33 13 chr6 24239450 24239600 -125277437 - RSINE1 SINE B4 -8 157 5 3 769 38 39 0 0 chr6 24239898 24239950 -125277087 + AT_rich Low_complexity Low_complexity 1 52 0 3 769 29434 86 19 28 chr6 24239985 24245243 -125271794 + L1Md_F2 LINE L1 371 5584 -299 3 769 7658 64 10 2 chr6 24245245 24246221 -125270816 + L1Md_F2 LINE L1 5587 6570 -12 3 769 299 352 31 16 chr6 24246318 24246445 -125270592 - MER94 DNA AcHobo -5 129 1 3 769 472 335 131 23 chr6 24246478 24246784 -125270253 + MLT1B LTR MaLR 1 339 -51 3 769 1722 201 91 5 chr6 24246888 24247274 -125269763 - MTD LTR MaLR 0 419 1 3 769 23 0 0 0 chr6 24247468 24247491 -125269546 + AT_rich Low_complexity Low_complexity 1 23 0 3 96 344 349 72 88 chr6 24248282 24248656 -125268381 + ORR1E LTR MaLR 3 370 0 3 770 642 26 0 0 chr6 24249152 24249228 -125267809 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 770 551 347 57 75 chr6 24249336 24249791 -125267246 - MLT2B3 LTR ERVL -107 447 1 3 770 257 68 23 0 chr6 24250717 24250761 -125266276 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 3 770 21 0 0 0 chr6 24251172 24251193 -125265844 + AT_rich Low_complexity Low_complexity 1 21 0 3 770 291 358 27 70 chr6 24251324 24251510 -125265527 + MTEa LTR MaLR 6 183 -196 3 770 544 167 8 8 chr6 24251531 24251652 -125265385 + CT-rich Low_complexity Low_complexity 1 121 0 3 770 368 259 104 26 chr6 24251653 24251768 -125265269 + MTEa LTR MaLR 200 323 -56 3 770 574 202 0 34 chr6 24252432 24252550 -125264487 + MTD LTR MaLR 1 114 -305 3 770 743 66 9 0 chr6 24252552 24252658 -125264379 + (TCTA)n Simple_repeat Simple_repeat 1 107 0 3 770 471 48 0 0 chr6 24252742 24252804 -125264233 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 3 770 546 264 98 49 chr6 24252873 24253030 -125264007 - B3A SINE B2 -6 192 27 3 770 955 39 70 0 chr6 24253030 24253159 -125263878 + L1Md_F3 LINE L1 6433 6570 -14 3 770 546 264 98 49 chr6 24253159 24253184 -125263853 - B3A SINE B2 -172 26 2 3 770 256 329 35 0 chr6 24253209 24253292 -125263745 - MER21B LTR ERV1 -558 305 220 3 770 2450 179 148 37 chr6 24253292 24253913 -125263124 - RMER6C LTR ERVK 0 690 1 3 770 225 343 18 81 chr6 24254026 24254137 -125262900 - MER77 LTR ERVL -411 196 93 3 770 277 333 0 26 chr6 24254099 24254176 -125262861 - MER21B LTR ERV1 -774 89 15 3 770 333 0 0 0 chr6 24254340 24254377 -125262660 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 770 513 242 176 47 chr6 24255121 24255455 -125261582 - L1MB2 LINE L1 -4 6167 5783 3 770 486 0 0 0 chr6 24255455 24255509 -125261528 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 770 513 242 176 47 chr6 24255509 24255555 -125261482 - L1MB2 LINE L1 -389 5782 5739 3 770 324 284 52 10 chr6 24255562 24255658 -125261379 + L2a LINE L2 3327 3426 0 3 770 577 273 141 5 chr6 24257097 24257303 -125259734 + Lx8 LINE L1 6548 6781 -692 3 770 2425 55 58 6 chr6 24257308 24257653 -125259384 + L1_Mus2 LINE L1 6204 6566 0 3 770 1000 53 30 8 chr6 24257660 24257793 -125259244 + B1_Mus1 SINE Alu 1 136 -12 3 770 339 25 0 0 chr6 24257793 24257833 -125259204 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 3 770 279 0 0 0 chr6 24257833 24257863 -125259174 + (GGGGA)n Simple_repeat Simple_repeat 5 35 0 3 770 890 133 0 7 chr6 24257865 24258016 -125259021 + (GAAAA)n Simple_repeat Simple_repeat 3 152 0 3 770 405 362 140 18 chr6 24258372 24258757 -125258280 - L1MEg LINE L1 -5641 443 12 3 770 458 46 15 0 chr6 24258762 24258827 -125258210 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 770 198 0 0 0 chr6 24258827 24258849 -125258188 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 770 816 148 34 0 chr6 24261037 24261186 -125255851 + Lx4A LINE L1 6902 7055 -3 3 770 22 0 0 0 chr6 24262971 24262993 -125254044 + AT_rich Low_complexity Low_complexity 1 22 0 3 770 240 341 0 34 chr6 24263462 24263550 -125253487 - BC1_Mm scRNA scRNA -62 90 6 4 770 325 212 57 89 chr6 24263563 24263687 -125253350 - ID_B1 SINE B4 -2 222 103 4 770 248 298 44 0 chr6 24263763 24263877 -125253160 + Lx7 LINE L1 7578 7696 0 4 770 409 322 121 36 chr6 24264064 24264312 -125252725 + B4 SINE B4 5 273 -19 4 770 1427 275 26 0 chr6 24264920 24265266 -125251771 - MTEa LTR MaLR 0 379 25 4 770 25 31 0 0 chr6 24265440 24265472 -125251565 + AT_rich Low_complexity Low_complexity 1 32 0 4 770 201 39 0 0 chr6 24266683 24266709 -125250328 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 770 378 320 120 17 chr6 24267208 24267383 -125249654 - MLT1C LTR MaLR -68 399 207 4 770 1593 254 14 14 chr6 24267797 24268174 -125248863 + MTE2b LTR MaLR 1 370 0 4 770 1323 310 41 28 chr6 24269605 24270216 -125246821 - Lx8 LINE L1 -121 7352 6734 4 770 25 51 0 0 chr6 24270773 24270812 -125246225 + AT_rich Low_complexity Low_complexity 1 39 0 4 770 1450 254 57 23 chr6 24270813 24271249 -125245788 - Lx6 LINE L1 -27 7433 6983 4 770 2426 87 12 12 chr6 24271554 24271881 -125245156 - ORR1A2 LTR MaLR 0 327 1 4 770 276 30 0 0 chr6 24271897 24271930 -125245107 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 4 770 309 313 105 42 chr6 24272324 24272514 -125244523 - MIR SINE MIR -54 208 7 4 770 588 281 102 49 chr6 24273205 24273490 -125243547 + MTE2a LTR MaLR 77 376 -3 4 770 825 133 0 0 chr6 24274119 24274254 -125242783 + (GGA)n Simple_repeat Simple_repeat 3 137 0 4 770 208 146 18 35 chr6 24274393 24274450 -125242587 + GA-rich Low_complexity Low_complexity 4 59 0 4 770 2782 95 9 24 chr6 24276331 24276753 -125240284 + L1_Mus4 LINE L1 6219 6634 -2 4 770 465 103 0 0 chr6 24276899 24276967 -125240070 + (GGA)n Simple_repeat Simple_repeat 2 69 0 4 770 1240 66 0 0 chr6 24277283 24277449 -125239588 + L1_Mus2 LINE L1 6401 6566 0 4 770 27 0 0 0 chr6 24277503 24277530 -125239507 + AT_rich Low_complexity Low_complexity 1 27 0 4 770 528 292 108 5 chr6 24277656 24277841 -125239196 + ORR1D2 LTR MaLR 93 289 -70 4 770 308 257 14 0 chr6 24279104 24279174 -125237863 + ID4_ SINE ID 4 74 -9 4 770 558 155 0 0 chr6 24279279 24279376 -125237661 + GA-rich Low_complexity Low_complexity 4 100 0 4 770 180 125 0 0 chr6 24279426 24279458 -125237579 + (CAA)n Simple_repeat Simple_repeat 3 34 0 4 770 1006 100 0 0 chr6 24280446 24280586 -125236451 + B1_Mus1 SINE Alu 7 146 -2 4 770 504 48 0 0 chr6 24280586 24280649 -125236388 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 4 770 373 324 43 38 chr6 24280676 24280697 -125236340 - MER67D LTR ERV1 -277 384 366 4 770 1422 50 0 0 chr6 24280697 24280876 -125236161 + (GGGAA)n Simple_repeat Simple_repeat 1 179 0 4 770 719 234 50 54 chr6 24280876 24281103 -125235934 - MER67D LTR ERV1 -296 365 1 4 770 325 281 53 0 chr6 24281752 24281866 -125235171 - MTEa-int LTR MaLR -1460 120 1 4 770 1529 276 30 11 chr6 24281872 24282238 -125234799 - MTEa LTR MaLR -6 373 1 4 770 423 257 51 23 chr6 24284000 24284215 -125232822 + L1MA9 LINE L1 6089 6309 -3 4 770 509 314 79 26 chr6 24284334 24284524 -125232513 - B4A SINE B4 -74 218 19 4 770 195 42 0 0 chr6 24284544 24284568 -125232469 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 4 770 1766 263 46 5 chr6 24284584 24284974 -125232063 + MTD LTR MaLR 2 407 -12 4 770 207 188 0 0 chr6 24285820 24285868 -125231169 + T-rich Low_complexity Low_complexity 1 48 0 4 770 1693 185 26 112 chr6 24285899 24286319 -125230718 + ORR1C2 LTR MaLR 1 384 0 4 770 1865 302 66 79 chr6 24286402 24287904 -125229133 + Lx8 LINE L1 5506 7030 -443 4 770 274 316 77 0 chr6 24287992 24288109 -125228928 + Lx8 LINE L1 7055 7180 -293 4 770 251 233 6 11 chr6 24288172 24288353 -125228684 + CT-rich Low_complexity Low_complexity 1 179 0 4 770 444 19 0 0 chr6 24288361 24288414 -125228623 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 770 702 35 0 0 chr6 24288414 24288498 -125228539 + (GA)n Simple_repeat Simple_repeat 1 85 0 4 770 396 0 0 0 chr6 24288588 24288632 -125228405 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 770 261 0 0 0 chr6 24289828 24289857 -125227180 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 770 549 139 115 15 chr6 24289857 24289998 -125227039 + RMER1B Other Other 864 1064 -2 4 770 204 40 0 0 chr6 24290070 24290095 -125226942 + (TAA)n Simple_repeat Simple_repeat 3 27 0 4 770 3306 88 122 12 chr6 24290185 24290693 -125226344 + LTRIS2 LTR ERV1 1 564 0 4 770 384 289 89 13 chr6 24291074 24291232 -125225805 - MIRb SINE MIR -98 170 1 4 770 582 190 0 0 chr6 24291571 24291687 -125225350 + GA-rich Low_complexity Low_complexity 1 116 0 4 770 1025 133 0 11 chr6 24291687 24291869 -125225168 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 770 3516 151 46 25 chr6 24292075 24292726 -125224311 + RLTR25A LTR ERVK 1 665 -438 4 770 305 62 21 0 chr6 24292852 24292900 -125224137 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 770 1227 48 0 0 chr6 24292902 24293047 -125223990 - B1_Mus2 SINE Alu -2 145 1 4 770 1112 152 66 44 chr6 24294705 24295059 -125221978 + RLTR25A LTR ERVK 650 1102 -1 4 770 22 0 0 0 chr6 24295211 24295233 -125221804 + AT_rich Low_complexity Low_complexity 1 22 0 4 770 183 80 0 0 chr6 24295745 24295770 -125221267 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 770 226 332 112 71 chr6 24296429 24296653 -125220384 - ORR1E LTR MaLR -12 347 115 4 770 204 40 0 0 chr6 24297432 24297457 -125219580 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 770 312 301 122 27 chr6 24297459 24297606 -125219431 - HAL1-3A_ME LINE L1 -414 2444 2284 4 770 228 35 0 0 chr6 24300080 24300109 -125216928 + (TTA)n Simple_repeat Simple_repeat 1 29 0 4 770 533 158 19 115 chr6 24300109 24300266 -125216771 - RMER10B LTR ERVL -62 336 195 4 770 407 274 50 44 chr6 24302163 24302323 -125214714 + RSINE1 SINE B4 3 163 -2 4 770 1023 264 112 3 chr6 24302423 24302719 -125214318 + MTE2b LTR MaLR 52 379 0 4 770 22 35 0 0 chr6 24302899 24302928 -125214109 + AT_rich Low_complexity Low_complexity 1 29 0 4 770 1109 126 22 92 chr6 24303046 24303162 -125213875 - Lx4A LINE L1 -1249 5809 5714 4 770 2295 119 9 0 chr6 24303162 24303505 -125213532 - ORR1A1 LTR MaLR 0 346 1 4 770 1109 126 22 92 chr6 24303505 24303616 -125213421 - Lx4A LINE L1 -1345 5713 5598 4 770 4364 93 32 20 chr6 24303612 24304304 -125212733 + Lx4A LINE L1 5687 6386 -672 4 770 21 0 0 0 chr6 24304524 24304545 -125212492 + AT_rich Low_complexity Low_complexity 1 21 0 4 770 1776 204 25 81 chr6 24304682 24305115 -125211922 - MTD LTR MaLR -8 411 3 4 770 430 329 61 33 chr6 24306157 24306402 -125210635 + MIRb SINE MIR 17 268 0 4 770 2178 269 19 28 chr6 24306534 24307170 -125209867 + Lx9 LINE L1 6302 6931 -713 4 770 843 17 0 42 chr6 24307554 24307674 -125209363 + (TCCC)n Simple_repeat Simple_repeat 4 118 0 4 770 1410 70 0 26 chr6 24308049 24308240 -125208797 - B2_Mm2 SINE B2 -8 187 2 4 770 180 0 0 0 chr6 24309320 24309340 -125207697 + (T)n Simple_repeat Simple_repeat 1 20 0 4 770 1184 61 0 0 chr6 24309340 24309487 -125207550 - B1_Mus2 SINE Alu 0 147 1 4 770 25 31 0 0 chr6 24310243 24310275 -125206762 + AT_rich Low_complexity Low_complexity 1 32 0 4 770 711 35 0 0 chr6 24310358 24310444 -125206593 + (GAA)n Simple_repeat Simple_repeat 2 87 0 4 770 185 327 36 45 chr6 24310511 24310623 -125206414 - L2a LINE L2 -4 3422 3312 4 770 1447 213 123 30 chr6 24310736 24311109 -125205928 - MTD LTR MaLR 0 419 12 4 770 451 292 57 14 chr6 24311244 24311456 -125205581 + L1MA8 LINE L1 5933 6153 -138 4 770 291 71 0 0 chr6 24311625 24311667 -125205370 + B1_Mur4 SINE Alu 107 148 -2 4 770 406 61 15 15 chr6 24311667 24311734 -125205303 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 4 770 228 163 0 0 chr6 24312772 24312815 -125204222 + CT-rich Low_complexity Low_complexity 2 44 0 4 770 1097 70 0 34 chr6 24313393 24313540 -125203497 + B1_Mus1 SINE Alu 1 142 -6 4 770 1781 201 69 23 chr6 24314628 24315019 -125202018 - MTD LTR MaLR 0 419 11 4 770 240 220 94 35 chr6 24315018 24315103 -125201934 + MLT1B LTR MaLR 39 128 -339 4 770 332 279 56 28 chr6 24315247 24315391 -125201646 - RMER15 LTR ERVL -154 421 274 4 770 1033 62 0 40 chr6 24315542 24315694 -125201343 - L1Md_F2 LINE L1 -9 6573 6428 4 770 403 309 21 7 chr6 24315719 24315859 -125201178 + MLT1B LTR MaLR 244 385 -5 4 770 455 175 29 0 chr6 24315895 24315998 -125201039 + Lx9 LINE L1 7533 7638 -6 4 770 2279 107 6 0 chr6 24316613 24316930 -125200107 + ORR1A2 LTR MaLR 1 319 -8 4 770 21 71 0 0 chr6 24318109 24318151 -125198886 + AT_rich Low_complexity Low_complexity 1 42 0 4 770 1658 59 9 0 chr6 24318953 24319173 -125197864 + L1_Mus3 LINE L1 6408 6629 -9 4 770 733 181 14 21 chr6 24320252 24320393 -125196644 - B1_Mur4 SINE Alu -6 144 5 4 770 358 345 1 16 chr6 24320425 24320565 -125196472 - MLT1A LTR MaLR -68 322 174 4 770 284 120 0 20 chr6 24320609 24320660 -125196377 + (GGGGA)n Simple_repeat Simple_repeat 3 52 0 4 770 407 319 32 42 chr6 24320664 24320854 -125196183 - MLT1A LTR MaLR -186 188 1 4 770 1440 269 34 8 chr6 24321503 24321855 -125195182 + MTEa LTR MaLR 5 365 -14 4 770 21 36 0 0 chr6 24321921 24321949 -125195088 + AT_rich Low_complexity Low_complexity 1 28 0 4 770 380 314 51 0 chr6 24322091 24322209 -125194828 - MER110-int LTR ERV1 -1930 2717 2594 4 770 217 229 0 0 chr6 24322838 24322886 -125194151 + C-rich Low_complexity Low_complexity 1 48 0 4 770 501 252 0 0 chr6 24323075 24323210 -125193827 + G-rich Low_complexity Low_complexity 6 140 0 4 770 239 159 23 0 chr6 24323211 24323255 -125193782 + GA-rich Low_complexity Low_complexity 3 47 0 4 770 228 266 75 12 chr6 24323343 24323423 -125193614 - ORR1D1 LTR MaLR -273 101 17 4 770 423 0 0 0 chr6 24324277 24324324 -125192713 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 770 375 23 0 0 chr6 24324324 24324367 -125192670 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 770 2127 128 17 45 chr6 24324373 24324792 -125192245 + RMER17C LTR ERVK 1 407 -3 5 770 210 71 0 0 chr6 24325445 24325473 -125191564 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 770 225 0 0 0 chr6 24325899 24325924 -125191113 + (A)n Simple_repeat Simple_repeat 1 25 0 5 770 587 252 81 17 chr6 24326055 24326289 -125190748 + L1M2 LINE L1 4905 5153 -990 5 770 364 296 17 9 chr6 24327185 24327301 -125189736 - MLT1A1 LTR MaLR 0 408 292 5 770 1162 346 133 85 chr6 24327414 24328900 -125188137 - MLT-int LTR MaLR -4 1731 174 5 770 4237 158 13 32 chr6 24328900 24329671 -125187366 + RMER6A LTR ERVK 1 756 0 5 770 3147 160 72 14 chr6 24329770 24330354 -125186683 + RMER20B LTR ERVK 10 627 0 5 770 240 289 33 66 chr6 24330430 24330552 -125186485 - MLT1A1 LTR MaLR 0 408 291 5 770 899 240 19 8 chr6 24330856 24331116 -125185921 + L1_Mur3 LINE L1 2311 2573 -3307 5 770 443 250 10 0 chr6 24331296 24331392 -125185645 - MTE2a LTR MaLR -87 292 196 5 770 342 0 0 0 chr6 24331445 24331483 -125185554 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 770 1317 168 91 25 chr6 24331514 24331800 -125185237 + ORR1C2 LTR MaLR 1 305 -79 5 770 191 116 0 44 chr6 24331848 24331893 -125185144 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 5 770 316 179 60 0 chr6 24331998 24332065 -125184972 + ORR1C2 LTR MaLR 305 375 -9 5 770 341 389 29 39 chr6 24332160 24332441 -125184596 - L2 LINE L2 -2214 1205 928 5 770 381 43 0 0 chr6 24333064 24333111 -125183926 + (CCA)n Simple_repeat Simple_repeat 1 47 0 5 770 1126 131 28 0 chr6 24333187 24333363 -125183674 - B2_Mm2 SINE B2 -14 181 1 5 770 460 221 0 127 chr6 24333506 24333534 -125183503 - Lx6 LINE L1 -4 7456 7431 5 770 1271 21 0 0 chr6 24333534 24333679 -125183358 + B1_Mm SINE Alu 2 146 -1 5 770 460 221 0 127 chr6 24333679 24333816 -125183221 - Lx6 LINE L1 -30 7430 7312 5 770 1956 270 42 79 chr6 24334183 24335184 -125181853 + RMER1C Other Other 211 1054 -288 5 770 3420 215 70 32 chr6 24335199 24335284 -125181753 - Lx6 LINE L1 -478 6982 6895 5 770 285 29 0 0 chr6 24335284 24335318 -125181719 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 770 3420 215 70 32 chr6 24335318 24336102 -125180935 - Lx6 LINE L1 -566 6894 6081 5 770 2086 131 32 3 chr6 24336106 24336444 -125180593 + RMER6D LTR ERVK 5 352 -368 5 770 1862 179 62 8 chr6 24336544 24337044 -125179993 - Lx6 LINE L1 -1424 6036 5517 5 770 661 136 54 0 chr6 24337041 24337188 -125179849 - L1_Mur3 LINE L1 -2589 3291 3137 5 770 504 252 176 0 chr6 24337202 24337321 -125179716 + RMER21B LTR ERV1 1 140 -807 5 770 786 236 6 12 chr6 24337323 24337486 -125179551 + RMER21B LTR ERV1 673 834 -8 5 770 1914 191 21 21 chr6 24337495 24337929 -125179108 - L1_Mur3 LINE L1 -3497 2383 1950 5 770 375 232 148 28 chr6 24337927 24338069 -125178968 - L1_Mur3 LINE L1 -7264 464 306 5 770 4683 109 32 1 chr6 24338283 24339009 -125178028 - L1_Mus1 LINE L1 -661 5222 4475 5 770 6963 83 6 1 chr6 24339005 24340315 -125176722 + L1_Mus1 LINE L1 5231 6545 -22 5 770 2408 55 2 242 chr6 24340317 24340826 -125176211 + RLTR10 LTR ERVK 2 388 -2 5 770 4101 51 2 1 chr6 24340838 24341716 -125175321 + RLTR10-int LTR ERVK 41 992 -995 5 770 321 175 0 0 chr6 24341917 24341974 -125175063 + RLTR10-int LTR ERVK 447 503 -6039 5 770 7821 35 7 7 chr6 24341957 24342956 -125174081 + RLTR10-int LTR ERVK 988 1986 -1 5 770 2895 65 5 37 chr6 24342956 24343357 -125173680 + RLTR10 LTR ERVK 1 388 -2 5 770 418 269 106 0 chr6 24343885 24343989 -125173048 + B1F1 SINE Alu 2 116 -33 5 770 357 268 78 26 chr6 24343886 24344001 -125173036 + ID_B1 SINE B4 84 204 -20 5 770 1933 273 37 20 chr6 24344145 24344684 -125172353 + RMER15 LTR ERVL 28 575 0 5 770 180 0 0 0 chr6 24346880 24346900 -125170137 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 770 252 0 0 0 chr6 24346943 24346971 -125170066 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 770 249 33 0 0 chr6 24348807 24348837 -125168200 + (TAA)n Simple_repeat Simple_repeat 1 30 0 5 770 861 242 0 71 chr6 24349479 24349746 -125167291 - Lx7 LINE L1 0 7696 7449 5 770 236 194 60 75 chr6 24349750 24349786 -125167251 - Lx7 LINE L1 -200 7496 7468 5 770 1188 48 0 7 chr6 24349786 24349934 -125167103 + B1_Mus2 SINE Alu 1 147 0 5 770 236 194 60 75 chr6 24349934 24350031 -125167006 - Lx7 LINE L1 -229 7467 7365 5 770 2454 219 22 14 chr6 24350109 24350693 -125166344 - Lx7 LINE L1 -347 7349 6761 5 770 203 171 0 0 chr6 24350695 24350736 -125166301 + T-rich Low_complexity Low_complexity 1 41 0 5 770 4356 202 40 29 chr6 24350754 24351862 -125165175 + Lx6 LINE L1 5522 6644 -816 5 770 4372 174 48 21 chr6 24351859 24352887 -125164150 - Lx7 LINE L1 -1719 5977 4932 5 770 2662 186 53 78 chr6 24352898 24353503 -125163534 + RLTR18 LTR ERVK 1 590 -26 5 770 3117 69 44 62 chr6 24353701 24354181 -125162856 - L1_Mus2 LINE L1 -1 6565 6095 5 770 4208 52 2 0 chr6 24354181 24354942 -125162095 + L1_Mus2 LINE L1 5312 6073 -493 5 770 513 293 104 124 chr6 24354987 24355359 -125161678 - MTD LTR MaLR -25 394 1 5 770 315 313 36 12 chr6 24355416 24355523 -125161514 - PB1D10 SINE Alu -3 124 1 5 770 303 28 0 0 chr6 24356599 24356635 -125160402 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 770 204 158 26 0 chr6 24356835 24356873 -125160164 + A-rich Low_complexity Low_complexity 2 40 0 5 770 835 56 0 31 chr6 24356950 24357079 -125159958 + L1_Mus1 LINE L1 6443 6567 0 5 770 531 0 0 0 chr6 24359535 24359594 -125157443 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 770 246 32 0 0 chr6 24359594 24359624 -125157413 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 770 255 79 0 0 chr6 24359648 24359686 -125157351 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 770 183 42 0 0 chr6 24359738 24359762 -125157275 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 770 15862 21 0 0 chr6 24359785 24362393 -125154644 - L1Md_A LINE L1 0 6582 3975 5 770 3757 67 4 2 chr6 24362571 24363051 -125153986 - L1_Mus1 LINE L1 -2 6565 6085 5 770 1195 261 138 21 chr6 24363410 24363880 -125153157 + Lx7 LINE L1 6804 7328 -368 5 770 347 361 86 43 chr6 24364977 24365301 -125151736 + MLT1J LTR MaLR 1 338 -174 5 770 252 43 43 21 chr6 24365860 24365907 -125151130 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 770 238 208 0 0 chr6 24367395 24367443 -125149594 - Lx5 LINE L1 -362 6688 6641 5 770 834 11 0 0 chr6 24367464 24367559 -125149478 + (TTC)n Simple_repeat Simple_repeat 2 96 0 5 770 21 0 0 0 chr6 24368516 24368537 -125148500 + AT_rich Low_complexity Low_complexity 1 21 0 5 770 288 77 0 0 chr6 24368573 24368612 -125148425 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 770 1103 265 73 54 chr6 24368665 24369279 -125147758 + Charlie2a DNA MER1_type 944 1569 -1292 5 770 338 207 157 0 chr6 24369293 24369414 -125147623 + Lx9 LINE L1 7502 7641 -3 5 770 1228 204 3 53 chr6 24369922 24370223 -125146814 - Lx9 LINE L1 -373 7271 6986 5 770 1197 205 176 122 chr6 24370922 24371428 -125145609 - MT2A LTR ERVL 0 533 1 5 770 302 167 14 27 chr6 24371486 24371560 -125145477 - ORR1A3-int LTR MaLR -1324 639 567 5 770 2917 144 19 4 chr6 24371560 24372077 -125144960 - MERVL_2A-int LTR ERVL -133 5628 5104 5 770 204 143 24 0 chr6 24372084 24372126 -125144911 + (CAA)n Simple_repeat Simple_repeat 3 45 0 5 770 2895 247 69 13 chr6 24372129 24372923 -125144114 - Lx6 LINE L1 -93 7367 6529 5 770 5151 140 39 7 chr6 24373027 24373919 -125143118 - MERVL_2A-int LTR ERVL -3829 1932 1012 5 770 1869 188 26 30 chr6 24373919 24374112 -125142925 - MERVL_2A-int LTR ERVL -5335 426 232 5 770 405 0 0 0 chr6 24374112 24374157 -125142880 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 770 1869 188 26 30 chr6 24374157 24374391 -125142646 - MERVL_2A-int LTR ERVL -5530 231 1 5 770 456 19 0 0 chr6 24374588 24374641 -125142396 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 770 279 0 0 0 chr6 24374641 24374671 -125142366 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 770 280 262 6 6 chr6 24375587 24375756 -125141281 + (CA)n Simple_repeat Simple_repeat 1 169 0 5 770 445 221 6 6 chr6 24375769 24375946 -125141091 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 770 246 143 79 30 chr6 24375950 24376051 -125140986 - L1M1 LINE L1 -417 5886 5781 5 770 537 338 16 59 chr6 24376258 24376563 -125140474 + B4A SINE B4 1 292 0 5 770 22 0 0 0 chr6 24377275 24377297 -125139740 + AT_rich Low_complexity Low_complexity 1 22 0 5 770 1235 252 55 19 chr6 24377953 24378317 -125138720 + MTE2a LTR MaLR 1 377 -2 5 770 2555 82 5 11 chr6 24378607 24378976 -125138061 - L1_Mus4 LINE L1 -6 6630 6264 5 770 1839 56 16 0 chr6 24378976 24379226 -125137811 - L1_Mus4 LINE L1 -591 6045 5792 5 96 33822 43 1 3 chr6 24379227 24384389 -125132648 + L1Md_T LINE L1 338 5589 -297 5 771 8455 33 0 0 chr6 24384389 24385385 -125131652 + L1Md_T LINE L1 5590 6585 0 5 771 13603 119 132 4 chr6 24385398 24389212 -125127825 - L1_Mus4 LINE L1 -828 5808 759 5 771 333 333 30 38 chr6 24389550 24389681 -125127356 + MLT1C LTR MaLR 338 467 0 5 771 430 297 143 46 chr6 24389831 24390279 -125126758 - L1MB1 LINE L1 -63 6105 5607 5 771 705 229 7 7 chr6 24390279 24390420 -125126617 - B1F SINE Alu -8 141 1 5 771 430 301 105 38 chr6 24390420 24390547 -125126490 - L1MB1 LINE L1 -562 5606 5480 5 771 220 204 23 0 chr6 24390756 24390800 -125126237 + CT-rich Low_complexity Low_complexity 3 47 0 5 771 272 327 38 19 chr6 24390800 24390906 -125126131 - B1_Mur2 SINE Alu -14 135 28 5 771 1834 86 87 64 chr6 24391094 24391405 -125125632 - ORR1A3 LTR MaLR -8 318 1 5 771 21 36 0 0 chr6 24391426 24391454 -125125583 + AT_rich Low_complexity Low_complexity 1 28 0 5 771 2224 205 51 104 chr6 24391995 24392637 -125124400 - RMER19C LTR ERVK -3 608 1 5 771 272 94 19 0 chr6 24392687 24392740 -125124297 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 771 556 152 4 311 chr6 24392922 24393170 -125123867 + ORR1B1-int LTR MaLR 469 640 -1323 5 771 541 271 91 134 chr6 24393208 24393506 -125123531 + MT2B LTR ERVL 1 285 -316 5 771 3747 180 23 103 chr6 24393383 24394391 -125122646 + ORR1B1-int LTR MaLR 621 1481 -28 5 771 1965 162 46 31 chr6 24394403 24394791 -125122246 + ORR1B1 LTR MaLR 1 394 0 5 771 303 121 0 0 chr6 24396425 24396483 -125120554 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 771 234 0 0 0 chr6 24396623 24396649 -125120388 + (CATA)n Simple_repeat Simple_repeat 2 27 0 5 771 422 326 0 8 chr6 24397082 24397215 -125119822 + RMER1C Other Other 55 186 -1156 5 771 253 300 142 0 chr6 24399063 24399300 -125117737 - L1M3 LINE L1 -516 5775 5491 5 771 180 0 0 0 chr6 24400013 24400033 -125117004 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 771 770 198 91 21 chr6 24400377 24400563 -125116474 - B3 SINE B2 -17 199 1 5 771 243 268 0 0 chr6 24401310 24401381 -125115656 - L1MEc LINE L1 -4836 1564 1494 5 771 233 296 143 27 chr6 24401402 24402075 -125114962 - L1MEc LINE L1 -4979 1421 671 5 771 246 329 73 0 chr6 24402091 24402228 -125114809 - L1MEc LINE L1 -5705 695 549 5 771 302 330 158 14 chr6 24402463 24402684 -125114353 - L1MEc LINE L1 -6103 297 45 5 771 341 296 43 71 chr6 24402993 24403166 -125113871 + L1MC4 LINE L1 5825 5998 -181 5 771 431 361 84 22 chr6 24404511 24404879 -125112158 + L1ME3B LINE L1 5692 6082 -158 5 771 522 46 0 0 chr6 24405321 24405386 -125111651 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 771 698 12 62 45 chr6 24405643 24405819 -125111218 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 771 5339 68 11 4 chr6 24406461 24407211 -125109826 - L1Md_F LINE L1 -856 5027 4273 5 771 12646 76 74 54 chr6 24407186 24407915 -125109122 - L1Md_F LINE L1 -2463 3420 2775 5 771 1456 139 36 75 chr6 24407915 24408250 -125108787 + RLTRETN_Mm LTR ERVK 1 322 0 6 771 12646 76 74 54 chr6 24408250 24409366 -125107671 - L1Md_F LINE L1 -3109 2774 1525 5 771 5137 25 5 7 chr6 24409366 24409971 -125107066 - L1Md_F3 LINE L1 -2 6582 5979 6 771 12646 100 59 35 chr6 24409971 24410973 -125106064 - L1Md_F LINE L1 -4359 1524 510 5 771 397 319 17 111 chr6 24411239 24411419 -125105618 + RSINE1 SINE B4 3 165 0 6 771 6844 158 40 9 chr6 24412189 24414257 -125102780 + Lx2B LINE L1 4834 6964 -36 6 771 249 57 0 0 chr6 24414258 24414293 -125102744 + (TTTAA)n Simple_repeat Simple_repeat 3 37 0 6 771 254 305 0 0 chr6 24415035 24415094 -125101943 + MER2 DNA MER2_type 4 62 -283 6 771 7185 135 40 11 chr6 24415302 24416637 -125100400 + L1_Mur2 LINE L1 4107 5479 -398 6 771 1985 193 17 22 chr6 24416634 24417048 -125099989 - Lx5 LINE L1 -195 6855 6444 6 771 931 160 189 24 chr6 24417048 24417326 -125099711 + RMER4B LTR ERVK 262 585 0 6 771 578 250 39 15 chr6 24417334 24417464 -125099573 + ID_B1 SINE B4 84 216 -8 6 771 236 200 73 0 chr6 24417417 24417472 -125099565 + PB1D10 SINE Alu 59 117 0 6 771 242 250 0 56 chr6 24417512 24417584 -125099453 + MER2 DNA MER2_type 121 188 -157 6 771 386 287 9 9 chr6 24417606 24417715 -125099322 + BC1_Mm scRNA scRNA 2 110 -42 6 771 269 357 47 0 chr6 24417711 24417840 -125099197 + MER2 DNA MER2_type 211 345 0 6 771 680 209 5 86 chr6 24418073 24418293 -125098744 - Lx6 LINE L1 -40 7420 7219 6 771 640 246 88 23 chr6 24418303 24418474 -125098563 + Lx6 LINE L1 7036 7217 -243 6 771 204 290 30 61 chr6 24419973 24420039 -125096998 - L2b LINE L2 0 3375 3312 6 771 585 0 0 0 chr6 24420903 24420968 -125096069 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 771 2768 73 0 35 chr6 24421388 24421783 -125095254 + L1Md_F2 LINE L1 6190 6570 -12 6 771 960 90 0 0 chr6 24422482 24422627 -125094410 + (CA)n Simple_repeat Simple_repeat 2 146 0 6 771 1800 193 43 5 chr6 24423125 24423495 -125093542 - ORR1C2 LTR MaLR 0 384 1 6 771 556 216 0 18 chr6 24423726 24423839 -125093198 + B1_Mur1 SINE Alu 37 147 -2 6 771 1962 75 0 4 chr6 24423893 24424162 -125092875 - L1Md_F2 LINE L1 0 6582 6315 6 771 354 217 0 0 chr6 24424299 24424368 -125092669 - B1_Mur1 SINE Alu -2 147 79 6 771 2726 50 20 6 chr6 24424459 24424517 -125092520 - ORR1A1 LTR MaLR 0 346 289 6 771 198 0 0 0 chr6 24424517 24424539 -125092498 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6 771 2726 50 20 6 chr6 24424539 24424821 -125092216 - ORR1A1 LTR MaLR -58 288 2 6 771 13654 64 7 3 chr6 24424821 24426605 -125090432 - ORR1A1-int LTR MaLR 0 1792 1 6 771 2912 43 0 0 chr6 24426605 24426950 -125090087 - ORR1A1 LTR MaLR 0 346 2 6 771 351 44 0 0 chr6 24427276 24427321 -125089716 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 771 666 205 0 16 chr6 24427549 24427673 -125089364 - URR1B DNA MER1_type -103 122 1 6 771 2468 106 63 3 chr6 24427743 24428122 -125088915 + Lx2 LINE L1 6595 6996 -1 6 771 1014 54 0 0 chr6 24428444 24428573 -125088464 + (TGGA)n Simple_repeat Simple_repeat 1 129 0 6 771 530 290 53 46 chr6 24429381 24429533 -125087504 - B3A SINE B2 0 198 46 6 771 213 39 0 0 chr6 24429572 24429598 -125087439 + (A)n Simple_repeat Simple_repeat 1 26 0 6 771 270 338 108 25 chr6 24430313 24430471 -125086566 - L3 LINE CR1 -275 4214 4044 6 771 451 325 47 0 chr6 24430924 24431093 -125085944 - MIR SINE MIR -49 213 37 6 771 334 0 0 42 chr6 24431523 24431571 -125085466 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 6 771 3487 147 24 17 chr6 24432665 24433255 -125083782 + Lx2 LINE L1 6400 6993 -4 6 771 718 320 66 47 chr6 24433453 24433834 -125083203 - MLT1B LTR MaLR 0 390 3 6 771 198 0 0 0 chr6 24433896 24433918 -125083119 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 6 771 186 43 0 0 chr6 24434291 24434314 -125082723 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 771 248 181 13 65 chr6 24434314 24434383 -125082654 + L1MEc LINE L1 2309 2374 -4026 6 771 255 314 136 10 chr6 24434475 24434578 -125082459 + PB1D10 SINE Alu 1 116 -1 6 771 287 340 0 10 chr6 24434580 24434678 -125082359 + GA-rich Low_complexity Low_complexity 4 100 0 6 771 577 325 122 22 chr6 24434681 24435323 -125081714 + L1MEc LINE L1 2509 3215 -3104 6 771 1098 95 0 0 chr6 24435323 24435470 -125081567 + B1_Mus1 SINE Alu 1 147 -1 6 771 577 325 122 20 chr6 24435470 24435605 -125081432 + L1MEc LINE L1 3213 3357 -2962 6 771 234 0 0 0 chr6 24435605 24435631 -125081406 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 771 577 325 122 21 chr6 24435631 24436003 -125081034 + L1MEc LINE L1 3358 3764 -2555 6 771 262 268 0 0 chr6 24436116 24436187 -125080850 + MLT1A0 LTR MaLR 295 365 0 6 771 555 279 25 20 chr6 24436288 24436511 -125080526 + L1MD LINE L1 4985 5208 -938 6 771 234 0 0 0 chr6 24436645 24436671 -125080366 + (A)n Simple_repeat Simple_repeat 1 26 0 6 771 22 35 0 0 chr6 24437548 24437577 -125079460 + AT_rich Low_complexity Low_complexity 1 29 0 6 771 333 286 37 8 chr6 24437850 24437984 -125079053 + L1MEc LINE L1 5715 5852 -494 6 771 1397 81 0 0 chr6 24438012 24438198 -125078839 - L1_Mus2 LINE L1 -1 6565 6380 6 771 750 166 95 85 chr6 24438474 24438685 -125078352 + RMER1C Other Other 1130 1342 0 6 771 6845 107 22 9 chr6 24438895 24440464 -125076573 + Lx LINE L1 5066 6654 0 6 771 814 161 67 12 chr6 24441120 24441284 -125075753 + B2_Mm2 SINE B2 2 174 -21 6 771 200 231 13 0 chr6 24441287 24441365 -125075672 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 771 36111 36 1 0 chr6 24441746 24447383 -125069654 + L1Md_T LINE L1 1 5589 -297 6 771 9583 5 0 0 chr6 24447383 24448378 -125068659 + L1Md_T LINE L1 5590 6584 -1 6 771 29 0 0 0 chr6 24448378 24448407 -125068630 + AT_rich Low_complexity Low_complexity 1 29 0 6 771 228 300 76 22 chr6 24448664 24448756 -125068281 + RMER10A LTR ERVL 318 414 -28 6 771 1205 180 153 31 chr6 24448774 24448966 -125068071 + Lx9 LINE L1 7284 7501 -143 6 771 324 0 0 0 chr6 24448966 24449002 -125068035 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 771 1205 180 153 31 chr6 24449002 24449130 -125067907 + Lx9 LINE L1 7502 7642 -2 6 771 1082 269 71 59 chr6 24449158 24449565 -125067472 + LTR65 LTR ERV1 34 445 -224 6 771 549 0 0 0 chr6 24449727 24449788 -125067249 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 771 609 237 78 28 chr6 24451490 24451707 -125065330 - L1MA8 LINE L1 -1 6290 6063 6 771 616 133 28 37 chr6 24452008 24452117 -125064920 + RMER6C LTR ERVK 1 108 -582 6 771 654 279 38 0 chr6 24452815 24452973 -125064064 - RSINE1 SINE B4 0 165 2 6 771 285 37 0 69 chr6 24455104 24455162 -125061875 + (CAAA)n Simple_repeat Simple_repeat 4 57 0 6 771 384 59 0 0 chr6 24455325 24455376 -125061661 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 771 308 24 0 24 chr6 24455376 24455417 -125061620 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 771 735 255 41 5 chr6 24455957 24456154 -125060883 + B3 SINE B2 5 208 -8 6 771 4544 104 29 54 chr6 24456164 24456886 -125060151 - L1_Mus3 LINE L1 -3 6635 5932 6 771 617 50 40 10 chr6 24456911 24457011 -125060026 - L1Md_F2 LINE L1 0 6582 6480 6 771 13850 44 3 0 chr6 24457011 24458679 -125058358 + L1Md_F3 LINE L1 3913 5585 -298 6 771 8520 45 10 0 chr6 24458680 24459668 -125057369 + L1Md_F3 LINE L1 5587 6584 0 6 771 4112 41 2 2 chr6 24459668 24460133 -125056904 - L1Md_F2 LINE L1 -15 6567 6103 6 771 23 54 0 0 chr6 24460167 24460204 -125056833 + AT_rich Low_complexity Low_complexity 1 37 0 6 771 339 25 0 0 chr6 24460865 24460905 -125056132 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 771 1230 78 0 0 chr6 24461087 24461254 -125055783 + (GGGAA)n Simple_repeat Simple_repeat 5 171 0 6 771 5072 94 46 0 chr6 24461409 24462100 -125054937 - L1_Mus3 LINE L1 -7 6631 5909 6 771 267 253 30 40 chr6 24462157 24462256 -125054781 - MLT1A1 LTR MaLR -17 391 294 6 771 1460 90 16 5 chr6 24463429 24463619 -125053418 - B2_Mm2 SINE B2 -3 192 1 6 771 2161 137 71 25 chr6 24463871 24464238 -125052799 + ORR1C2 LTR MaLR 1 384 0 6 771 373 247 75 0 chr6 24464270 24464363 -125052674 - PB1D10 SINE Alu -8 109 10 6 771 208 269 290 0 chr6 24465383 24465476 -125051561 - L4 LINE RTE -214 1815 1696 6 771 207 0 0 0 chr6 24466149 24466172 -125050865 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 771 289 296 102 16 chr6 24466731 24466858 -125050179 - MER46C DNA MER2_type -133 205 68 6 771 261 0 0 0 chr6 24466971 24467000 -125050037 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 771 329 290 97 53 chr6 24467330 24467443 -125049594 + B4 SINE B4 5 122 -170 6 771 279 194 103 15 chr6 24467519 24467587 -125049450 + RSINE1 SINE B4 89 162 -3 6 771 252 0 0 0 chr6 24467632 24467660 -125049377 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 771 248 289 0 0 chr6 24467662 24467714 -125049323 + ID4_ SINE ID 29 80 -3 6 771 21 0 0 0 chr6 24469445 24469466 -125047571 + AT_rich Low_complexity Low_complexity 1 21 0 6 771 523 278 161 34 chr6 24469577 24470073 -125046964 + L1ME3A LINE L1 5602 6160 -13 6 771 333 329 19 93 chr6 24471375 24471536 -125045501 + B1F1 SINE Alu 1 149 0 6 771 217 261 138 0 chr6 24471539 24471604 -125045433 + ID4_ SINE ID 1 74 -9 6 771 342 0 0 0 chr6 24471608 24471646 -125045391 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 771 290 321 54 157 chr6 24471648 24471980 -125045057 - MLT1A LTR MaLR -68 306 9 6 771 249 261 116 0 chr6 24472063 24472132 -125044905 - ID4_ SINE ID -4 79 3 6 771 529 256 7 28 chr6 24472132 24472273 -125044764 - ID_B1 SINE B4 -3 221 84 6 771 1170 257 25 44 chr6 24473114 24473432 -125043605 + MTC-int LTR MaLR 734 1045 -213 6 771 489 370 80 22 chr6 24473507 24473731 -125043306 - B4A SINE B4 -1 291 55 6 771 1155 186 49 5 chr6 24473929 24474134 -125042903 + B3 SINE B2 3 216 0 6 771 255 307 174 22 chr6 24475850 24476120 -125040917 - L2 LINE L2 -552 2867 2557 6 771 456 298 60 0 chr6 24476505 24476656 -125040381 + RSINE1 SINE B4 3 162 -3 6 771 184 315 68 0 chr6 24476696 24476769 -125040268 + MER5A DNA MER1_type 13 90 -99 6 771 279 284 63 18 chr6 24476777 24476888 -125040149 - L2 LINE L2 -1498 1921 1806 6 771 212 172 34 17 chr6 24478774 24478833 -125038204 + A-rich Low_complexity Low_complexity 4 63 0 6 771 3163 113 9 7 chr6 24479208 24479637 -125037400 - RLTR23 LTR ERV1 0 430 1 6 771 396 0 0 0 chr6 24480418 24480462 -125036575 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 771 254 288 22 126 chr6 24481986 24482121 -125034916 - MER5A DNA MER1_type -68 121 1 7 771 1176 89 6 0 chr6 24483455 24483613 -125033424 + B2_Mm1a SINE B2 2 160 -33 7 771 432 0 0 0 chr6 24483613 24483661 -125033376 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 7 771 52 0 0 0 chr6 24483661 24483713 -125033324 + AT_rich Low_complexity Low_complexity 1 52 0 7 771 1914 196 22 8 chr6 24484047 24484408 -125032629 - ORR1D1 LTR MaLR 0 374 9 7 771 1192 71 0 0 chr6 24485031 24485172 -125031865 - B1_Mus1 SINE Alu -7 141 1 7 771 210 331 59 52 chr6 24485425 24485578 -125031459 + MIRc SINE MIR 50 203 -65 7 771 3890 104 81 6 chr6 24486298 24486841 -125030196 - MT2B2 LTR ERVL 0 584 1 7 771 945 260 58 71 chr6 24487129 24487423 -125029614 - B4A SINE B4 0 292 3 7 771 23 33 0 0 chr6 24488291 24488321 -125028716 + AT_rich Low_complexity Low_complexity 1 30 0 7 771 306 291 53 29 chr6 24489159 24489262 -125027775 + Lx8 LINE L1 7143 7237 -236 7 771 212 174 22 0 chr6 24489347 24489393 -125027644 + (TGG)n Simple_repeat Simple_repeat 3 49 0 7 771 515 74 12 0 chr6 24489394 24489475 -125027562 + (TG)n Simple_repeat Simple_repeat 1 82 0 7 771 441 0 0 0 chr6 24489475 24489523 -125027514 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 771 1226 276 161 33 chr6 24489682 24490322 -125026715 - L1MA9 LINE L1 -8 6304 5583 7 771 234 0 0 0 chr6 24490564 24490590 -125026447 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 771 269 271 43 0 chr6 24491447 24491517 -125025520 - PB1D9 SINE Alu -6 114 42 7 771 237 327 0 0 chr6 24491519 24491620 -125025417 + CT-rich Low_complexity Low_complexity 3 103 0 7 771 242 228 0 66 chr6 24491627 24491688 -125025349 - B1F2 SINE Alu -92 57 1 7 771 243 0 0 0 chr6 24491812 24491839 -125025198 + (TC)n Simple_repeat Simple_repeat 2 28 0 7 771 309 68 0 0 chr6 24491839 24491882 -125025155 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 771 247 250 80 150 chr6 24494818 24494931 -125022106 - B4A SINE B4 0 292 188 7 771 299 362 137 7 chr6 24495318 24495596 -125021441 + L3 LINE CR1 3318 3631 -858 7 771 3269 25 8 0 chr6 24495641 24496001 -125021036 + L1Md_F2 LINE L1 6217 6579 -3 7 771 323 333 98 47 chr6 24496143 24496417 -125020620 + L3 LINE CR1 3894 4181 -308 7 771 261 0 0 0 chr6 24497077 24497106 -125019931 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 771 232 286 16 0 chr6 24497228 24497291 -125019746 + C-rich Low_complexity Low_complexity 5 68 0 7 771 231 178 125 40 chr6 24497307 24497359 -125019678 + RMER17C LTR ERVK 85 138 -272 7 771 887 12 81 0 chr6 24497359 24497520 -125019517 + (TTC)n Simple_repeat Simple_repeat 3 176 0 7 771 231 178 125 40 chr6 24497520 24497643 -125019394 + RMER17C LTR ERVK 139 274 -136 7 771 654 277 80 25 chr6 24497649 24497849 -125019188 + B4A SINE B4 82 292 0 7 771 1156 279 96 11 chr6 24498199 24498721 -125018316 - L1MA9 LINE L1 -193 6119 5554 7 771 1377 232 81 46 chr6 24498816 24499120 -125017917 + ORR1D2 LTR MaLR 3 324 -46 7 771 2045 102 34 113 chr6 24499120 24499475 -125017562 + ORR1A2 LTR MaLR 1 327 0 7 771 1377 232 81 46 chr6 24499475 24499518 -125017519 + ORR1D2 LTR MaLR 325 362 -8 7 771 235 273 71 85 chr6 24499621 24499833 -125017204 - L1M5 LINE L1 -327 5846 5638 7 771 279 0 0 0 chr6 24500414 24500445 -125016592 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 771 429 36 0 0 chr6 24500445 24500499 -125016538 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 771 1070 79 50 0 chr6 24500781 24500912 -125016125 + B1_Mus1 SINE Alu 3 140 -8 3 771 189 74 0 0 chr6 24500912 24500939 -125016098 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 771 25 51 0 0 chr6 24501092 24501131 -125015906 + AT_rich Low_complexity Low_complexity 1 39 0 5 771 303 202 133 80 chr6 24501541 24501654 -125015383 - PB1D7 SINE Alu -1 119 1 6 771 264 59 0 0 chr6 24502823 24502857 -125014180 + (T)n Simple_repeat Simple_repeat 1 34 0 7 771 1085 274 11 11 chr6 24503033 24503313 -125013724 + B4A SINE B4 1 280 -12 8 771 898 73 0 58 chr6 24503317 24503507 -125013530 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 771 21 0 0 0 chr6 24503924 24503945 -125013092 + AT_rich Low_complexity Low_complexity 1 21 0 1 771 279 0 0 0 chr6 24503972 24504003 -125013034 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 771 417 147 26 39 chr6 24504003 24504081 -125012956 - PB1D9 SINE Alu -10 110 34 1 771 412 256 0 79 chr6 24505333 24505460 -125011577 - PB1D10 SINE Alu 0 117 1 1 771 222 37 0 0 chr6 24505859 24505886 -125011151 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 771 1261 68 0 0 chr6 24507025 24507172 -125009865 + B1_Mus2 SINE Alu 1 147 0 1 771 269 89 0 22 chr6 24507423 24507469 -125009568 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 771 357 208 339 8 chr6 24507581 24507702 -125009335 - B4A SINE B4 -112 180 20 1 771 836 144 49 21 chr6 24509848 24509990 -125007047 + B1_Mus1 SINE Alu 2 147 -1 1 772 849 52 233 0 chr6 24511272 24511388 -125005649 + B1_Mm SINE Alu 5 147 0 1 772 204 67 0 0 chr6 24511388 24511418 -125005619 + (A)n Simple_repeat Simple_repeat 1 30 0 2 772 1441 70 35 0 chr6 24513495 24513696 -125003341 - MTB_Mm LTR MaLR -199 208 1 2 772 209 258 32 16 chr6 24515473 24515536 -125001501 + MIR SINE MIR 88 151 -57 2 772 462 51 0 33 chr6 24516613 24516674 -125000363 + L1Md_F2 LINE L1 6137 6195 -387 2 772 393 81 0 0 chr6 24517317 24517379 -124999658 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 772 291 296 109 27 chr6 24517433 24517685 -124999352 + L1MC5 LINE L1 6702 7002 -1040 2 772 243 0 0 0 chr6 24517880 24517907 -124999130 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 772 212 167 28 0 chr6 24518509 24518545 -124998492 + B1F1 SINE Alu 14 50 -99 2 772 608 256 39 0 chr6 24519304 24519433 -124997604 - B1F SINE Alu -6 143 10 2 772 275 192 0 19 chr6 24519592 24519645 -124997392 - B4A SINE B4 -1 291 240 2 772 301 257 29 0 chr6 24519657 24519727 -124997310 - B4A SINE B4 -101 191 120 2 772 588 277 82 53 chr6 24519777 24520021 -124997016 - MIRb SINE MIR -14 254 4 3 772 24 32 0 0 chr6 24520782 24520813 -124996224 + AT_rich Low_complexity Low_complexity 1 31 0 3 772 360 0 0 0 chr6 24522196 24522236 -124994801 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3 772 295 317 12 0 chr6 24522634 24522716 -124994321 + L2b LINE L2 3251 3333 -42 3 772 351 0 0 0 chr6 24524170 24524209 -124992828 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 772 1690 224 77 23 chr6 24524210 24524599 -124992438 - MTD LTR MaLR -7 412 3 3 772 30389 66 1 1 chr6 24524620 24528517 -124988520 + L1Md_F2 LINE L1 1687 5586 -297 3 772 7823 82 2 2 chr6 24528518 24529503 -124987534 + L1Md_F2 LINE L1 5588 6572 -10 3 772 373 265 164 19 chr6 24529542 24529750 -124987287 + L1MA8 LINE L1 5873 6110 -181 3 772 206 165 22 56 chr6 24529761 24529851 -124987186 + (TA)n Simple_repeat Simple_repeat 2 88 0 3 772 793 315 46 113 chr6 24529856 24529995 -124987042 - MTEa LTR MaLR -15 364 238 3 772 506 114 0 0 chr6 24529995 24530074 -124986963 - L1Md_F2 LINE L1 -1 6581 6503 4 772 793 315 46 113 chr6 24530074 24530324 -124986713 - MTEa LTR MaLR -142 237 1 3 772 2002 138 16 82 chr6 24530343 24530722 -124986315 + ORR1B1 LTR MaLR 41 394 0 4 772 1262 303 105 50 chr6 24530850 24531141 -124985896 + ORR1B1-int LTR MaLR 1 306 -1274 4 772 1367 92 11 21 chr6 24531141 24531329 -124985708 - B2_Mm2 SINE B2 -8 187 2 4 772 1262 303 105 50 chr6 24531329 24531582 -124985455 + ORR1B1-int LTR MaLR 307 575 -1005 4 772 1711 295 142 25 chr6 24531577 24531783 -124985254 + ORR1B1-int LTR MaLR 782 1002 -578 4 772 1143 43 0 0 chr6 24531783 24531924 -124985113 + (TA)n Simple_repeat Simple_repeat 2 142 0 4 772 1711 295 142 25 chr6 24531924 24532408 -124984629 + ORR1B1-int LTR MaLR 1003 1552 -28 4 772 398 337 65 131 chr6 24532385 24532499 -124984538 + ORR1B1 LTR MaLR 6 92 -267 4 772 826 183 177 5 chr6 24532499 24532691 -124984346 + URR1B DNA MER1_type 1 225 0 4 772 398 337 65 131 chr6 24532691 24532897 -124984140 + ORR1B1 LTR MaLR 93 304 -55 4 772 692 172 30 79 chr6 24532922 24533086 -124983951 + L1MA8 LINE L1 6132 6287 -4 3 772 60 59 0 0 chr6 24534422 24534524 -124982513 + AT_rich Low_complexity Low_complexity 1 102 0 4 772 311 333 26 40 chr6 24535152 24535380 -124981657 + L1ME1 LINE L1 5955 6179 0 4 772 423 0 0 0 chr6 24535683 24535730 -124981307 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 772 21 0 0 0 chr6 24536470 24536491 -124980546 + AT_rich Low_complexity Low_complexity 1 21 0 4 772 193 200 18 18 chr6 24536872 24536928 -124980109 + MIRc SINE MIR 209 264 -4 4 772 316 333 43 22 chr6 24537477 24537615 -124979422 + B1F1 SINE Alu 1 141 -8 5 772 471 78 0 0 chr6 24537699 24537763 -124979274 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 5 772 254 274 14 14 chr6 24538000 24538074 -124978963 + ID4 SINE ID 2 75 -8 5 772 2534 75 0 0 chr6 24538074 24538396 -124978641 - L1_Mus3 LINE L1 -445 6193 5872 5 772 1413 89 10 19 chr6 24538396 24538603 -124978434 + L1_Mus3 LINE L1 6433 6637 -1 5 772 987 93 0 0 chr6 24538687 24538827 -124978210 + (GGA)n Simple_repeat Simple_repeat 3 142 0 5 772 491 36 0 0 chr6 24539015 24539070 -124977967 + L1Md_F2 LINE L1 5532 5586 -297 5 772 8223 59 7 16 chr6 24539071 24540074 -124976963 + L1Md_F2 LINE L1 5588 6581 -1 5 772 32 26 0 0 chr6 24540990 24541029 -124976008 + AT_rich Low_complexity Low_complexity 1 39 0 5 772 494 253 0 21 chr6 24541410 24541507 -124975530 + B3 SINE B2 1 95 -121 5 772 219 139 0 0 chr6 24542973 24543009 -124974028 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 772 198 0 0 0 chr6 24543009 24543031 -124974006 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 6 772 787 181 0 22 chr6 24543196 24543332 -124973705 + B3 SINE B2 1 133 -83 6 772 240 318 257 5 chr6 24543450 24543652 -124973385 + L2a LINE L2 3110 3362 -64 6 772 1255 43 0 0 chr6 24543720 24543858 -124973179 + B1_Mm SINE Alu 1 138 -9 6 772 1318 88 37 27 chr6 24544129 24544316 -124972721 + B2_Mm2 SINE B2 1 189 -6 6 772 1432 78 0 11 chr6 24544321 24544502 -124972535 + B2_Mm2 SINE B2 2 180 -15 6 772 1892 79 8 27 chr6 24544597 24544856 -124972181 - L1Md_F2 LINE L1 -3 6579 6326 6 772 359 296 157 63 chr6 24545598 24546061 -124970976 + L1M4 LINE L1 4698 5164 -982 6 772 1278 107 43 5 chr6 24546061 24546249 -124970788 - B2_Mm2 SINE B2 0 195 1 6 772 359 268 185 40 chr6 24546249 24546623 -124970414 + L1M4 LINE L1 5165 5636 -542 6 772 322 343 78 10 chr6 24546902 24547071 -124969966 + MIRb SINE MIR 39 220 -48 6 772 27 0 0 0 chr6 24548331 24548358 -124968679 + AT_rich Low_complexity Low_complexity 1 27 0 7 772 236 53 26 0 chr6 24548371 24548409 -124968628 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 772 252 0 0 0 chr6 24548758 24548786 -124968251 + (TCCA)n Simple_repeat Simple_repeat 4 31 0 7 772 338 331 38 49 chr6 24550354 24550538 -124966499 + MER5A DNA MER1_type 7 188 -1 7 772 208 333 0 75 chr6 24550546 24550640 -124966397 - MIR SINE MIR -85 123 37 7 772 301 290 107 29 chr6 24550994 24551097 -124965940 + MER81 DNA AcHobo 1 111 -3 7 772 342 100 0 0 chr6 24551721 24551781 -124965256 + (CAGA)n Simple_repeat Simple_repeat 3 62 0 7 772 189 0 0 0 chr6 24552012 24552033 -124965004 + (A)n Simple_repeat Simple_repeat 1 21 0 7 772 408 278 94 16 chr6 24552627 24552755 -124964282 - B1F1 SINE Alu -9 140 3 7 772 409 311 32 32 chr6 24552890 24553016 -124964021 - RSINE1 SINE B4 -34 131 6 7 772 251 292 0 0 chr6 24553384 24553456 -124963581 + GA-rich Low_complexity Low_complexity 2 73 0 8 772 280 143 14 14 chr6 24554308 24554379 -124962658 + CT-rich Low_complexity Low_complexity 1 71 0 8 772 26 0 0 0 chr6 24556076 24556102 -124960935 + AT_rich Low_complexity Low_complexity 1 26 0 8 772 330 26 0 0 chr6 24557914 24557953 -124959084 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 772 186 348 76 34 chr6 24558105 24558224 -124958813 - L2a LINE L2 -9 3417 3294 8 772 609 14 0 0 chr6 24558547 24558617 -124958420 + (CAAG)n Simple_repeat Simple_repeat 2 71 0 8 772 240 294 167 0 chr6 24558824 24558926 -124958111 + B4A SINE B4 79 197 -95 8 772 291 54 0 0 chr6 24560273 24560310 -124956727 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 8 772 22 35 0 0 chr6 24560650 24560679 -124956358 + AT_rich Low_complexity Low_complexity 1 29 0 8 772 588 227 70 0 chr6 24561181 24561309 -124955728 + B1_Mur2 SINE Alu 3 139 -10 8 772 1016 138 132 10 chr6 24561399 24561596 -124955441 + URR1A DNA MER1_type 5 225 -1 9 772 474 258 81 5 chr6 24561800 24562010 -124955027 + Lx7 LINE L1 6016 6241 -1455 9 772 826 197 67 0 chr6 24562762 24562955 -124954082 - B3 SINE B2 -10 206 1 9 772 198 103 0 0 chr6 24562962 24562991 -124954046 + (T)n Simple_repeat Simple_repeat 1 29 0 9 772 195 250 0 0 chr6 24564843 24564887 -124952150 - L3 LINE CR1 -794 3695 3652 9 772 26 0 0 0 chr6 24566256 24566282 -124950755 + AT_rich Low_complexity Low_complexity 1 26 0 9 772 198 160 0 0 chr6 24566297 24566347 -124950690 + (CAT)n Simple_repeat Simple_repeat 3 52 0 9 772 793 173 29 0 chr6 24567630 24567769 -124949268 - B1_Mus1 SINE Alu -5 143 1 9 772 252 232 0 0 chr6 24568436 24568492 -124948545 + B4A SINE B4 1 56 -236 9 772 21 57 0 0 chr6 24568679 24568714 -124948323 + AT_rich Low_complexity Low_complexity 1 35 0 9 772 262 321 0 0 chr6 24569365 24569499 -124947538 + (TGG)n Simple_repeat Simple_repeat 2 135 0 1 772 186 43 0 0 chr6 24569647 24569670 -124947367 + (AGGGGG)n Simple_repeat Simple_repeat 5 27 0 1 772 598 261 26 74 chr6 24569771 24569961 -124947076 + B3A SINE B2 4 184 -14 1 772 215 258 145 0 chr6 24569974 24570036 -124947001 + ID SINE ID 10 80 -144 1 772 21 71 0 0 chr6 24570058 24570100 -124946937 + AT_rich Low_complexity Low_complexity 1 42 0 1 772 297 128 0 0 chr6 24570951 24570998 -124946039 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 1 772 861 182 88 0 chr6 24571028 24571220 -124945817 - B3 SINE B2 -7 209 1 1 772 830 42 246 0 chr6 24571756 24571874 -124945163 - B1_Mm SINE Alu 0 147 1 1 772 2809 154 88 60 chr6 24572102 24572773 -124944264 + RMER6C LTR ERVK 1 690 0 1 772 610 158 40 86 chr6 24573003 24573155 -124943882 + B1_Mur2 SINE Alu 5 149 0 1 772 22 56 0 0 chr6 24573438 24573474 -124943563 + AT_rich Low_complexity Low_complexity 1 36 0 1 772 427 212 83 49 chr6 24573925 24574069 -124942968 - B1_Mur1 SINE Alu 0 149 1 1 772 21 0 0 0 chr6 24575276 24575297 -124941740 + AT_rich Low_complexity Low_complexity 1 21 0 1 772 1101 248 113 10 chr6 24575607 24575916 -124941121 + ORR1E LTR MaLR 9 349 -10 1 772 4186 65 0 6 chr6 24575929 24576458 -124940579 - L1_Mus1 LINE L1 0 6567 6042 1 772 392 214 109 30 chr6 24576539 24576640 -124940397 + PB1 SINE Alu 1 109 -18 1 772 24 0 0 0 chr6 24577221 24577245 -124939792 + AT_rich Low_complexity Low_complexity 1 24 0 1 772 646 181 108 39 chr6 24577552 24577786 -124939251 - B2_Mm1t SINE B2 0 216 2 1 772 563 205 31 47 chr6 24578184 24578312 -124938725 + B1_Mur4 SINE Alu 18 143 -7 1 772 225 182 45 0 chr6 24579378 24579422 -124937615 - Charlie24 DNA MER1_type -41 2409 2364 1 772 470 281 55 41 chr6 24580335 24580554 -124936483 + Lx6 LINE L1 5910 6131 -1329 1 772 456 19 0 0 chr6 24580554 24580607 -124936430 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 772 432 291 7 26 chr6 24580676 24580828 -124936209 - B1_Mur1 SINE Alu 0 149 1 1 772 275 293 32 109 chr6 24581879 24582141 -124934896 + B4 SINE B4 8 292 0 1 772 228 111 0 0 chr6 24582153 24582189 -124934848 + (AGGGGG)n Simple_repeat Simple_repeat 3 38 0 1 772 1331 159 63 30 chr6 24582215 24582514 -124934523 + RMER1B Other Other 755 1063 -3 1 772 29 47 0 0 chr6 24582555 24582598 -124934439 + AT_rich Low_complexity Low_complexity 1 43 0 1 772 3642 170 82 38 chr6 24582905 24583646 -124933391 + RLTR25B LTR ERVK 1 774 -254 1 772 620 167 28 42 chr6 24583639 24583783 -124933254 + RLTR25B LTR ERVK 962 1103 0 1 772 1160 185 151 24 chr6 24584193 24584525 -124932512 + ORR1D1 LTR MaLR 1 374 0 1 772 309 264 165 24 chr6 24586314 24586514 -124930523 - MER44A DNA MER2_type -2 337 104 1 772 381 199 200 30 chr6 24586591 24586726 -124930311 + Lx4A LINE L1 6900 7057 -1 1 772 606 93 0 0 chr6 24586728 24586814 -124930223 + (GGGA)n Simple_repeat Simple_repeat 3 88 0 1 772 855 170 0 0 chr6 24586849 24586990 -124930047 + B1_Mur4 SINE Alu 10 150 0 1 772 1156 43 7 7 chr6 24587046 24587188 -124929849 + B1_Mus2 SINE Alu 5 146 -1 1 772 259 101 12 48 chr6 24587188 24587271 -124929766 + A-rich Low_complexity Low_complexity 1 80 0 1 772 284 280 160 0 chr6 24587830 24587955 -124929082 + MLT1F1 LTR MaLR 396 540 -29 1 772 26 0 0 0 chr6 24588821 24588847 -124928190 + AT_rich Low_complexity Low_complexity 1 26 0 1 772 1032 115 178 0 chr6 24589132 24589323 -124927714 + URR1A DNA MER1_type 1 225 -1 1 772 293 0 0 26 chr6 24589383 24589421 -124927616 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 772 306 373 91 24 chr6 24591479 24591644 -124925393 + MLT1H2 LTR MaLR 17 192 -297 1 772 1617 215 136 9 chr6 24592199 24592647 -124924390 + RLTR11A2 LTR ERVK 1 505 -22 1 772 1337 144 250 4 chr6 24593643 24593915 -124923122 + ORR1B2 LTR MaLR 21 359 -8 1 772 995 188 20 20 chr6 24594210 24594406 -124922631 + ORR1D2 LTR MaLR 173 368 -2 1 772 651 232 144 84 chr6 24594458 24594770 -124922267 - MTD LTR MaLR -55 366 1 1 772 230 232 57 14 chr6 24598210 24598280 -124918757 - ID4 SINE ID -6 77 5 1 772 212 178 22 0 chr6 24599644 24599689 -124917348 + B4 SINE B4 2 47 -245 1 772 427 289 137 29 chr6 24599972 24600111 -124916926 - B4A SINE B4 -6 286 133 1 772 362 263 121 3 chr6 24600557 24600750 -124916287 - MER33 DNA MER1_type -187 137 17 1 772 464 248 172 14 chr6 24601344 24601565 -124915472 + L1MCa LINE L1 1494 1749 -4759 1 772 313 178 0 161 chr6 24601600 24601626 -124915411 - B2_Mm1t SINE B2 -118 75 57 1 772 577 207 28 7 chr6 24601626 24601767 -124915270 + RSINE1 SINE B4 3 146 -19 1 772 383 72 0 67 chr6 24601767 24601827 -124915210 - B2_Mm2 SINE B2 -137 58 3 1 772 277 328 92 8 chr6 24601827 24601916 -124915121 + MTEb LTR MaLR 279 377 -2 1 772 6744 65 40 9 chr6 24602197 24603146 -124913891 - L1_Mus1 LINE L1 -3 6564 5587 1 772 1370 184 141 41 chr6 24603189 24603529 -124913508 + ORR1D1 LTR MaLR 1 374 0 1 772 21 57 0 0 chr6 24603588 24603623 -124913414 + AT_rich Low_complexity Low_complexity 1 35 0 1 772 180 0 0 0 chr6 24603674 24603694 -124913343 + (A)n Simple_repeat Simple_repeat 1 20 0 1 772 374 163 0 216 chr6 24603795 24603897 -124913140 + B1_Mur3 SINE Alu 1 80 -69 1 772 228 245 114 47 chr6 24604023 24604216 -124912821 + L1MEc LINE L1 1309 1514 -4886 1 772 357 255 123 32 chr6 24604242 24604493 -124912544 + L1MEc LINE L1 2390 2663 -3656 1 772 438 293 48 108 chr6 24604597 24604647 -124912390 + L1MEc LINE L1 3161 3211 -3108 1 772 809 261 58 10 chr6 24604647 24604852 -124912185 - B3 SINE B2 -1 215 1 1 772 438 293 48 108 chr6 24604852 24605069 -124911968 + L1MEc LINE L1 3212 3412 -2907 1 772 26 30 0 0 chr6 24605741 24605774 -124911263 + AT_rich Low_complexity Low_complexity 1 33 0 1 772 790 287 175 22 chr6 24606958 24607332 -124909705 + MLT1C LTR MaLR 9 401 -66 1 772 1100 250 60 47 chr6 24607565 24607930 -124909107 + MTEa LTR MaLR 1 370 -9 1 772 389 297 16 25 chr6 24609102 24609223 -124907814 + ID_B1 SINE B4 99 218 -6 1 772 1158 48 7 0 chr6 24610205 24610350 -124906687 + B1_Mus2 SINE Alu 2 147 0 1 772 261 0 0 0 chr6 24610350 24610379 -124906658 + (A)n Simple_repeat Simple_repeat 1 29 0 1 772 180 0 0 0 chr6 24612047 24612067 -124904970 + (ACTG)n Simple_repeat Simple_repeat 2 21 0 1 772 220 307 149 0 chr6 24612069 24612183 -124904854 + L2c LINE L2 3256 3386 -1 1 772 211 28 0 53 chr6 24612345 24612383 -124904654 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 772 26 0 0 0 chr6 24612847 24612873 -124904164 + AT_rich Low_complexity Low_complexity 1 26 0 1 772 255 61 0 0 chr6 24614928 24614961 -124902076 + (CGG)n Simple_repeat Simple_repeat 2 34 0 1 772 200 62 62 0 chr6 24616534 24616566 -124900471 + MIRm SINE MIR 115 148 -128 1 772 454 31 0 30 chr6 24617038 24617104 -124899933 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 772 237 178 0 0 chr6 24617133 24617178 -124899859 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 772 228 200 70 14 chr6 24617255 24617326 -124899711 + Lx9 LINE L1 7562 7636 -8 1 772 2623 315 95 23 chr6 24619361 24620524 -124896513 - Lx8 LINE L1 0 7473 6227 1 772 2547 131 10 51 chr6 24620538 24620932 -124896105 + ORR1C1 LTR MaLR 1 378 0 1 772 4096 230 64 40 chr6 24620932 24621282 -124895755 + Lx8 LINE L1 4344 4687 -1193 1 772 1938 132 30 48 chr6 24621282 24621617 -124895420 - ORR1A4 LTR MaLR 0 329 1 1 772 4096 243 68 39 chr6 24621617 24622761 -124894276 + Lx8 LINE L1 4688 5916 -1557 1 772 36274 35 0 0 chr6 24623351 24628785 -124888252 + L1Md_T LINE L1 59 5589 -297 1 772 9443 8 3 0 chr6 24628785 24629778 -124887259 + L1Md_T LINE L1 5590 6585 0 1 772 240 35 0 0 chr6 24629785 24629814 -124887223 + (A)n Simple_repeat Simple_repeat 1 29 0 1 772 198 295 64 0 chr6 24630728 24630806 -124886231 + MER5A DNA MER1_type 53 135 -54 1 772 314 192 0 27 chr6 24631317 24631392 -124885645 + RMER21B LTR ERV1 87 159 -683 1 772 523 286 142 23 chr6 24631446 24631664 -124885373 + RMER21B LTR ERV1 324 567 -275 1 772 280 331 72 52 chr6 24631892 24632045 -124884992 - MLT1N2 LTR MaLR -368 194 39 1 772 2395 168 84 47 chr6 24632306 24632793 -124884244 + RLTR16 LTR ERVK 1 505 0 1 772 211 245 0 36 chr6 24632904 24632959 -124884078 - MIR3 SINE MIR -17 191 139 1 772 1424 129 71 5 chr6 24633629 24633839 -124883198 - URR1B DNA MER1_type -1 224 1 1 772 2378 80 26 37 chr6 24635394 24635743 -124881294 + L1_Mus4 LINE L1 6292 6636 0 1 772 842 251 0 24 chr6 24636016 24636183 -124880854 + RSINE1 SINE B4 3 165 0 1 772 1562 181 188 0 chr6 24636442 24636767 -124880270 + ORR1B1 LTR MaLR 1 386 -8 1 772 889 197 132 146 chr6 24637394 24637822 -124879215 + MT2B LTR ERVL 1 542 -59 1 772 210 191 0 0 chr6 24637861 24637903 -124879134 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 772 698 284 20 40 chr6 24639221 24639518 -124877519 + RLTR15 LTR ERVK 1 291 -68 1 772 949 82 22 0 chr6 24639621 24639756 -124877281 - B2_Mm2 SINE B2 -57 138 1 1 772 913 156 13 20 chr6 24640020 24640170 -124876867 - B1_Mur3 SINE Alu 0 149 1 1 772 1832 120 12 68 chr6 24640369 24640709 -124876328 + ORR1A4 LTR MaLR 1 321 -8 1 773 712 353 83 33 chr6 24641692 24642261 -124874776 + L4 LINE RTE 1249 1845 -184 1 773 1637 141 10 188 chr6 24642381 24642880 -124874157 + RMER17C LTR ERVK 1 410 0 1 773 597 229 61 11 chr6 24642898 24643079 -124873958 + MER53 DNA hAT 2 191 -2 1 773 250 284 176 33 chr6 24643583 24643674 -124873363 + MLT1K LTR MaLR 74 177 -418 1 773 428 369 133 13 chr6 24644226 24644625 -124872412 - LTR16A LTR ERVL -4 447 1 2 773 214 255 50 143 chr6 24645406 24645525 -124871512 - L2b LINE L2 0 3375 3268 2 773 629 295 0 7 chr6 24646279 24646429 -124870608 + ID_B1 SINE B4 76 224 0 2 773 808 29 57 40 chr6 24646680 24646857 -124870180 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 773 230 0 33 0 chr6 24646932 24646962 -124870075 + (CAA)n Simple_repeat Simple_repeat 3 33 0 2 773 1669 165 132 9 chr6 24647315 24647629 -124869408 + ORR1B1 LTR MaLR 1 358 -36 2 773 2808 73 0 0 chr6 24647629 24647956 -124869081 + ORR1A2 LTR MaLR 1 327 0 2 773 1669 165 132 9 chr6 24647956 24647990 -124869047 + ORR1B1 LTR MaLR 359 392 -2 2 773 2821 307 103 31 chr6 24648157 24649628 -124867409 - Lx8 LINE L1 -277 7196 5620 2 773 532 263 118 10 chr6 24650322 24650610 -124866427 + MER33 DNA MER1_type 6 324 0 2 773 32 0 0 0 chr6 24650647 24650679 -124866358 + AT_rich Low_complexity Low_complexity 1 32 0 2 773 22 0 0 0 chr6 24651107 24651129 -124865908 + AT_rich Low_complexity Low_complexity 1 22 0 2 773 211 298 180 56 chr6 24651152 24651241 -124865796 - PB1D10 SINE Alu -17 100 1 2 773 27 29 0 0 chr6 24652208 24652242 -124864795 + AT_rich Low_complexity Low_complexity 1 34 0 2 773 21 0 0 0 chr6 24652287 24652308 -124864729 + AT_rich Low_complexity Low_complexity 1 21 0 2 773 1296 34 0 0 chr6 24652314 24652460 -124864577 + B1_Mm SINE Alu 1 146 -1 2 773 307 224 26 26 chr6 24652581 24652659 -124864378 + ID2 SINE ID 2 79 -4 2 773 193 358 15 0 chr6 24653568 24653635 -124863402 + MIRc SINE MIR 83 150 -118 2 773 407 271 47 0 chr6 24653926 24654055 -124862982 + MER33 DNA MER1_type 59 193 -131 2 773 2068 142 62 6 chr6 24655210 24655550 -124861487 + ORR1B2 LTR MaLR 1 359 -8 2 773 429 20 0 0 chr6 24655597 24655647 -124861390 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 773 25 31 0 0 chr6 24655726 24655758 -124861279 + AT_rich Low_complexity Low_complexity 1 32 0 2 773 252 0 0 0 chr6 24657415 24657443 -124859594 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 773 288 274 84 0 chr6 24658602 24658697 -124858340 + MIRb SINE MIR 95 197 -71 2 773 663 260 50 50 chr6 24659136 24659355 -124857682 - Lx8 LINE L1 -3 7470 7252 2 773 6578 175 41 63 chr6 24660009 24661233 -124855804 - Lx2B LINE L1 -6 6994 5795 2 773 1268 63 73 28 chr6 24661233 24661412 -124855625 - B2_Mm2 SINE B2 -7 188 2 2 773 6578 175 41 63 chr6 24661412 24661604 -124855433 - Lx2B LINE L1 -1206 5794 5609 2 773 1870 121 32 0 chr6 24661602 24661882 -124855155 + Lx2B LINE L1 5300 5588 -298 2 773 304 191 47 82 chr6 24662909 24663080 -124853957 + (CACAA)n Simple_repeat Simple_repeat 5 169 0 2 773 304 151 80 57 chr6 24663011 24663187 -124853850 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 773 180 306 137 89 chr6 24664041 24664231 -124852806 - L2c LINE L2 -81 3306 3108 2 773 23 0 0 0 chr6 24664441 24664464 -124852573 + AT_rich Low_complexity Low_complexity 1 23 0 2 773 1339 136 116 54 chr6 24664464 24664900 -124852137 - RLTR1B LTR ERV1 -76 436 1 2 773 20821 52 38 13 chr6 24664900 24666950 -124850087 - RLTR1B-int LTR ERV1 0 3299 1145 2 773 312 27 0 0 chr6 24666950 24666987 -124850050 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 773 20821 56 45 16 chr6 24666987 24667483 -124849554 - RLTR1B-int LTR ERV1 -2155 1144 632 2 773 198 0 0 0 chr6 24667483 24667505 -124849532 + (TGG)n Simple_repeat Simple_repeat 3 24 0 2 773 14586 60 49 73 chr6 24667505 24668212 -124848825 - RLTR1B-int LTR ERV1 -2668 631 4 2 773 1038 121 24 0 chr6 24668212 24668378 -124848659 - RLTR1B LTR ERV1 0 512 343 2 773 412 107 0 0 chr6 24668382 24668438 -124848599 - RLTR1B LTR ERV1 -102 410 355 2 773 247 125 78 59 chr6 24668566 24668617 -124848420 - MLT2B4 LTR ERVL 0 556 505 2 773 184 321 49 12 chr6 24669252 24669334 -124847703 + MIRc SINE MIR 77 161 -107 2 773 918 294 30 73 chr6 24669916 24670357 -124846680 - RMER15 LTR ERVL -17 558 4 2 773 239 259 42 135 chr6 24671008 24671200 -124845837 + L1MB5 LINE L1 5798 5971 -203 2 773 213 94 0 0 chr6 24671403 24671435 -124845602 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 2 773 240 337 30 30 chr6 24672411 24672512 -124844525 + MLT1I LTR MaLR 72 172 -239 2 773 243 288 68 0 chr6 24673212 24673285 -124843752 + ID4_ SINE ID 2 79 -4 2 773 233 260 0 0 chr6 24673330 24673380 -124843657 + ID_B1 SINE B4 113 162 -62 2 773 346 325 26 17 chr6 24673599 24673715 -124843322 - PB1D10 SINE Alu 0 117 1 2 773 398 301 0 0 chr6 24673625 24673718 -124843319 - ID_B1 SINE B4 -53 171 79 2 773 239 374 153 16 chr6 24673898 24674330 -124842707 + L2a LINE L2 2388 2878 -541 2 773 256 326 142 47 chr6 24674520 24674710 -124842327 + L2a LINE L2 2961 3168 -258 2 773 23 33 0 0 chr6 24674834 24674864 -124842173 + AT_rich Low_complexity Low_complexity 1 30 0 2 773 817 159 6 76 chr6 24675626 24675783 -124841254 + B1_Mus2 SINE Alu 2 147 0 2 773 344 229 33 33 chr6 24675832 24675954 -124841083 + Lx9 LINE L1 7503 7624 -20 2 773 21 36 0 0 chr6 24675958 24675986 -124841051 + AT_rich Low_complexity Low_complexity 1 28 0 2 773 375 23 0 0 chr6 24676007 24676051 -124840986 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 773 599 146 10 0 chr6 24676520 24676616 -124840421 + B1_Mur4 SINE Alu 54 150 0 2 773 350 115 16 0 chr6 24676618 24676679 -124840358 + (GGA)n Simple_repeat Simple_repeat 3 64 0 2 773 225 108 0 0 chr6 24676837 24676874 -124840163 + (T)n Simple_repeat Simple_repeat 1 37 0 2 773 369 294 237 77 chr6 24677494 24677811 -124839226 - MTEa LTR MaLR -6 373 6 2 773 675 90 229 0 chr6 24678336 24678458 -124838579 + ORR1A3 LTR MaLR 17 166 -160 2 773 4316 188 36 26 chr6 24678500 24679356 -124837681 - Lx5 LINE L1 -57 6993 6129 2 773 22 80 0 0 chr6 24680100 24680150 -124836887 + AT_rich Low_complexity Low_complexity 1 50 0 2 773 540 45 0 0 chr6 24680173 24680240 -124836797 + (CAAAG)n Simple_repeat Simple_repeat 3 69 0 2 773 243 0 0 0 chr6 24681224 24681251 -124835786 + (T)n Simple_repeat Simple_repeat 1 27 0 2 773 735 44 0 0 chr6 24682374 24682465 -124834572 + (TTTTC)n Simple_repeat Simple_repeat 5 95 0 2 773 426 213 0 0 chr6 24682466 24682560 -124834477 + CT-rich Low_complexity Low_complexity 1 94 0 2 773 926 266 65 111 chr6 24682720 24683117 -124833920 - MTE2a LTR MaLR 0 379 1 2 773 351 278 28 9 chr6 24685472 24685581 -124831456 - Lx8 LINE L1 -656 6817 6707 2 773 21 57 0 0 chr6 24685581 24685616 -124831421 + AT_rich Low_complexity Low_complexity 1 35 0 2 773 1353 224 75 8 chr6 24685625 24685985 -124831052 - Lx9 LINE L1 -16 7628 7245 2 773 432 213 45 38 chr6 24685985 24686117 -124830920 - Lx9 LINE L1 -528 7116 6984 2 773 2073 245 38 81 chr6 24686111 24687028 -124830009 - Lx9 LINE L1 -390 7254 6263 2 773 669 58 0 0 chr6 24687028 24687114 -124829923 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2 773 1566 288 64 123 chr6 24687114 24687143 -124829894 - Lx9 LINE L1 -1211 6262 6234 2 773 483 18 0 0 chr6 24687324 24687380 -124829657 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 2 773 7762 91 14 2 chr6 24687383 24688542 -124828495 - Lx LINE L1 -1 6653 5478 2 773 1978 216 175 20 chr6 24688513 24688997 -124828040 - L1_Mur1 LINE L1 -3662 2224 1596 2 773 1177 90 6 6 chr6 24688997 24689175 -124827862 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2 773 441 0 0 0 chr6 24689177 24689226 -124827811 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 2 773 1150 55 7 0 chr6 24689227 24689372 -124827665 - B1_Mus2 SINE Alu 0 147 2 2 773 3314 93 1 20 chr6 24689372 24689865 -124827172 - L1VL4 LINE L1 -2319 1240 759 2 773 2696 73 8 0 chr6 24689865 24690223 -124826814 - L1_Mus1 LINE L1 -2 6565 6205 2 773 3314 134 5 50 chr6 24690223 24690590 -124826447 - L1VL4 LINE L1 -5544 758 412 2 773 822 165 236 0 chr6 24690900 24691082 -124825955 - URR1B DNA MER1_type 0 225 1 2 773 311 331 8 0 chr6 24691572 24691705 -124825332 - L1MB1 LINE L1 -28 6161 6028 2 773 1183 289 34 38 chr6 24691716 24692269 -124824768 - L1MB1 LINE L1 -242 5947 5397 2 773 258 106 0 0 chr6 24692307 24692354 -124824683 + (T)n Simple_repeat Simple_repeat 1 47 0 2 773 552 259 42 35 chr6 24692357 24692501 -124824536 - B1_Mur1 SINE Alu 0 149 5 2 773 265 267 0 0 chr6 24692527 24692587 -124824450 - tRNA-Ala-GCG tRNA tRNA -14 61 2 2 773 303 331 42 56 chr6 24692608 24692752 -124824285 - B1F1 SINE Alu -7 142 1 2 773 567 294 82 80 chr6 24692788 24693291 -124823746 - L1MB1 LINE L1 -840 5303 4797 2 773 392 274 90 41 chr6 24694103 24694225 -124822812 + B1F2 SINE Alu 22 149 0 2 773 231 196 35 18 chr6 24694338 24694395 -124822642 + (CAA)n Simple_repeat Simple_repeat 2 59 0 2 773 545 307 24 5 chr6 24695474 24695680 -124821357 - B3 SINE B2 -6 210 1 2 773 289 211 78 0 chr6 24696060 24696150 -124820887 - Lx5 LINE L1 -3 7047 6951 2 773 249 140 80 0 chr6 24696767 24696817 -124820220 - PB1D10 SINE Alu -15 102 49 2 773 749 113 43 43 chr6 24696834 24696973 -124820064 + ORR1A4 LTR MaLR 5 143 -186 2 773 1553 137 38 30 chr6 24696934 24697197 -124819840 - MT2B LTR ERVL -336 265 1 2 773 23 0 0 0 chr6 24698609 24698632 -124818405 + AT_rich Low_complexity Low_complexity 1 23 0 2 773 828 141 48 27 chr6 24699507 24699653 -124817384 - B1_Mur4 SINE Alu 0 150 2 2 773 670 288 55 80 chr6 24700516 24700841 -124816196 - RMER15 LTR ERVL 0 575 259 2 773 22 0 0 0 chr6 24701205 24701227 -124815810 + AT_rich Low_complexity Low_complexity 1 22 0 2 773 511 15 29 0 chr6 24701246 24701314 -124815723 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 2 773 180 111 0 0 chr6 24701839 24701866 -124815171 + (A)n Simple_repeat Simple_repeat 1 27 0 2 773 245 346 0 60 chr6 24702037 24702120 -124814917 + ID4_ SINE ID 6 83 0 2 773 323 293 94 72 chr6 24702333 24702513 -124814524 - MER90a LTR ERV1 -11 603 420 2 773 950 83 8 8 chr6 24703143 24703264 -124813773 + B1_Mus1 SINE Alu 16 137 -11 2 773 351 0 0 0 chr6 24703264 24703303 -124813734 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 773 950 83 8 8 chr6 24703303 24703314 -124813723 + B1_Mus1 SINE Alu 138 148 0 2 773 1350 77 11 0 chr6 24703839 24704021 -124813016 + B2_Mm1t SINE B2 2 185 -8 2 773 976 297 21 39 chr6 24704260 24704540 -124812497 + B4A SINE B4 6 280 -12 2 773 28 71 0 0 chr6 24707846 24707902 -124809135 + AT_rich Low_complexity Low_complexity 1 56 0 3 773 1148 82 0 0 chr6 24708190 24708337 -124808700 - B1_Mus2 SINE Alu 0 147 1 3 773 741 57 16 16 chr6 24708593 24708718 -124808319 + (CAAAA)n Simple_repeat Simple_repeat 3 127 0 3 773 240 287 141 44 chr6 24709214 24709349 -124807688 - Lx8 LINE L1 -22 7451 7304 3 773 897 244 129 65 chr6 24709349 24709790 -124807247 - RMER2 LTR ERV1 0 567 1 3 773 2884 278 54 32 chr6 24709790 24710667 -124806370 - Lx8 LINE L1 -166 7307 6412 3 773 7399 65 19 1 chr6 24711008 24711956 -124805081 + L1_Mus1 LINE L1 5599 6563 -4 3 773 576 243 0 42 chr6 24713362 24713504 -124803533 + B1_Mur2 SINE Alu 1 136 -13 3 773 897 42 0 0 chr6 24713506 24713624 -124803413 + (CA)n Simple_repeat Simple_repeat 2 119 0 3 773 216 163 0 0 chr6 24714494 24714537 -124802500 + (CATA)n Simple_repeat Simple_repeat 4 46 0 3 773 1292 196 152 115 chr6 24714542 24714951 -124802086 - MT2A LTR ERVL -109 424 1 3 773 396 0 0 0 chr6 24715390 24715434 -124801603 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 773 21 0 0 0 chr6 24717360 24717381 -124799656 + AT_rich Low_complexity Low_complexity 1 21 0 3 773 252 143 0 0 chr6 24717785 24717827 -124799210 + (CTA)n Simple_repeat Simple_repeat 3 44 0 3 773 741 168 0 21 chr6 24717828 24717968 -124799069 - B1_Mus1 SINE Alu -2 146 10 3 773 299 312 74 37 chr6 24717981 24718144 -124798893 + RMER5 LTR ERV1 40 208 -326 3 773 210 71 0 0 chr6 24718365 24718393 -124798644 + (TTA)n Simple_repeat Simple_repeat 1 28 0 3 773 520 313 6 47 chr6 24718448 24718619 -124798418 + RSINE1 SINE B4 2 165 0 3 773 25 65 0 0 chr6 24718645 24718691 -124798346 + AT_rich Low_complexity Low_complexity 1 46 0 3 773 675 306 113 35 chr6 24718741 24719228 -124797809 - L1MA7 LINE L1 -106 6185 5661 3 773 585 0 0 0 chr6 24719304 24719369 -124797668 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 3 773 1598 73 13 4 chr6 24719373 24719606 -124797431 - Lx3_Mus LINE L1 -11 6998 6764 3 773 25 75 0 0 chr6 24720013 24720066 -124796971 + AT_rich Low_complexity Low_complexity 1 53 0 3 773 403 289 75 20 chr6 24720114 24720315 -124796722 - L1MA7 LINE L1 -656 5635 5424 3 773 699 173 107 0 chr6 24720425 24720471 -124796566 + Lx9 LINE L1 7453 7516 -128 3 773 267 114 0 0 chr6 24720471 24720515 -124796522 + (TATG)n Simple_repeat Simple_repeat 3 46 0 3 773 699 173 107 0 chr6 24720515 24720636 -124796401 + Lx9 LINE L1 7517 7637 -7 3 773 334 303 0 9 chr6 24720643 24720753 -124796284 - L1MA7 LINE L1 -917 5226 5118 3 773 743 193 35 21 chr6 24720895 24721038 -124795999 - B3 SINE B2 -71 145 1 3 773 598 207 0 41 chr6 24721042 24721070 -124795967 - MTEa-int LTR MaLR -188 1392 1366 3 773 324 0 0 0 chr6 24721070 24721106 -124795931 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 773 598 215 12 39 chr6 24721106 24721238 -124795799 - MTEa-int LTR MaLR -215 1365 1253 3 773 1570 333 47 29 chr6 24721247 24721869 -124795168 - MTEa-int LTR MaLR -947 633 1 3 773 386 260 83 0 chr6 24721874 24721970 -124795067 - MTEa LTR MaLR -7 372 269 3 773 784 152 13 0 chr6 24722044 24722195 -124794842 + CT-rich Low_complexity Low_complexity 2 154 0 3 773 815 171 0 28 chr6 24722196 24722340 -124794697 - B1_Mus1 SINE Alu -6 142 3 3 773 476 286 63 51 chr6 24722344 24722757 -124794280 - L1MA7 LINE L1 -3427 2716 2299 3 773 953 299 84 31 chr6 24722783 24723235 -124793802 - Lx8 LINE L1 -7 7466 6991 3 773 225 167 0 0 chr6 24723819 24723861 -124793176 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 773 1502 157 112 82 chr6 24724328 24724757 -124792280 - RMER10A LTR ERVL 0 442 1 3 773 536 329 0 14 chr6 24724771 24724919 -124792118 - ID_B1 SINE B4 -1 223 78 3 773 390 202 65 33 chr6 24724965 24725057 -124791980 - B1F SINE Alu -40 109 15 3 773 255 318 18 27 chr6 24726227 24726337 -124790700 - ORR1E LTR MaLR -12 367 259 3 773 1129 68 0 7 chr6 24726683 24726831 -124790206 - B1_Mm SINE Alu 0 147 1 3 773 406 235 24 0 chr6 24726837 24726922 -124790115 - ORR1E LTR MaLR -262 97 11 3 773 3912 88 30 0 chr6 24727285 24727854 -124789183 - L1_Mus1 LINE L1 -207 6359 5774 3 773 1439 86 24 5 chr6 24727854 24728065 -124788972 + L1_Mus1 LINE L1 6353 6567 0 3 773 180 0 0 0 chr6 24728351 24728371 -124788666 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 773 363 274 56 111 chr6 24729278 24729422 -124787615 - B1F2 SINE Alu -1 148 13 3 773 694 32 21 0 chr6 24729845 24729938 -124787099 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 3 773 851 152 221 6 chr6 24729946 24730118 -124786919 - B3 SINE B2 -6 210 2 3 773 312 27 0 0 chr6 24730827 24730864 -124786173 + (CCTG)n Simple_repeat Simple_repeat 2 38 0 3 773 688 306 162 11 chr6 24730870 24731183 -124785854 - MTE2b LTR MaLR -23 336 1 3 773 432 97 0 0 chr6 24731220 24731282 -124785755 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 3 773 412 165 23 12 chr6 24731284 24731370 -124785667 - Lx3A LINE L1 -11 6970 6884 3 773 1067 296 93 23 chr6 24731372 24731770 -124785267 - MTE-int LTR MaLR -1049 531 106 3 773 884 311 70 20 chr6 24731815 24732160 -124784877 - MTEa LTR MaLR 0 379 18 3 773 34221 51 6 4 chr6 24732674 24737223 -124779814 - L1Md_F3 LINE L1 -14 6570 2016 3 773 2791 22 0 0 chr6 24737223 24737545 -124779492 - RLTRETN_Mm LTR ERVK 0 322 1 3 773 34221 102 11 5 chr6 24737545 24739165 -124777872 - L1Md_F3 LINE L1 -3868 2015 422 3 773 38 68 0 0 chr6 24739176 24739249 -124777788 + AT_rich Low_complexity Low_complexity 1 73 0 3 773 180 0 0 0 chr6 24739415 24739435 -124777602 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 3 773 2657 211 36 9 chr6 24739453 24740030 -124777007 - Lx7 LINE L1 -299 7397 6805 3 773 534 189 0 3 chr6 24740027 24740132 -124776905 - L1_Mur3 LINE L1 -662 5218 5085 3 773 257 231 118 21 chr6 24740270 24740363 -124776674 - MER34A1 LTR ERV1 0 587 486 3 773 458 298 79 58 chr6 24741193 24741535 -124775502 - MER34-int LTR ERV1 -1948 6259 5911 3 773 299 274 41 31 chr6 24741585 24741683 -124775354 - MER34-int LTR ERV1 -3279 4928 4830 3 773 314 336 49 0 chr6 24741767 24741889 -124775148 - MER34-int LTR ERV1 -8063 144 17 3 773 738 171 0 0 chr6 24742058 24742187 -124774850 - URR1B DNA MER1_type -2 223 95 3 773 332 274 26 64 chr6 24742187 24742214 -124774823 + CYRA11_Mm Unknown Y-chromosome 173 322 -295 3 773 316 189 48 20 chr6 24742749 24742957 -124774080 + (TA)n Simple_repeat Simple_repeat 1 213 0 3 773 825 109 185 6 chr6 24742957 24743114 -124773923 - B2_Mm2 SINE B2 -10 185 1 3 773 316 230 41 29 chr6 24743114 24743142 -124773895 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 773 857 154 0 27 chr6 24743143 24743290 -124773747 - B1_Mus1 SINE Alu -1 147 5 3 773 382 396 45 7 chr6 24744020 24744175 -124772862 + MER21B LTR ERV1 273 433 -430 3 773 622 320 123 25 chr6 24744244 24744520 -124772517 + MER21B LTR ERV1 529 831 -32 3 773 216 86 0 0 chr6 24744647 24744682 -124772355 + (TATG)n Simple_repeat Simple_repeat 3 37 0 3 773 300 301 29 19 chr6 24745218 24745323 -124771714 + PB1D10 SINE Alu 6 111 -6 3 773 256 309 59 0 chr6 24745354 24745422 -124771615 + ID4_ SINE ID 5 76 -7 3 773 2145 121 44 6 chr6 24747304 24747527 -124769510 + Lx4A LINE L1 6704 6928 -130 3 773 255 61 0 0 chr6 24747527 24747560 -124769477 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 773 2145 121 44 6 chr6 24747560 24747678 -124769359 + Lx4A LINE L1 6929 7058 0 3 773 462 292 71 49 chr6 24748087 24748353 -124768684 + MER63D DNA AcHobo 3 274 -787 3 773 21 71 0 0 chr6 24748671 24748713 -124768324 + AT_rich Low_complexity Low_complexity 1 42 0 3 773 580 170 149 0 chr6 24748731 24748925 -124768112 - Lx9 LINE L1 -7 7637 7415 3 773 249 83 0 0 chr6 24749026 24749062 -124767975 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 773 267 157 0 0 chr6 24749065 24749135 -124767902 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 3 773 271 362 17 0 chr6 24749592 24749708 -124767329 - MIR SINE MIR -71 191 74 3 773 895 131 20 94 chr6 24749729 24749931 -124767106 + Lx3_Mus LINE L1 6817 7003 -6 3 773 229 286 101 43 chr6 24751987 24752126 -124764911 + L2a LINE L2 3279 3425 -1 3 773 17507 74 25 7 chr6 24752236 24755512 -124761525 - MusHAL1 LINE L1 -4 3349 16 3 773 1120 83 0 0 chr6 24755534 24755679 -124761358 - B1_Mus2 SINE Alu 0 147 3 3 773 1716 189 22 52 chr6 24755876 24755996 -124761041 - RLTR15 LTR ERVK -1 358 236 3 773 1101 88 0 7 chr6 24755996 24756145 -124760892 - B1_Mus1 SINE Alu 0 148 1 3 773 1716 189 22 52 chr6 24756145 24756393 -124760644 - RLTR15 LTR ERVK -124 235 1 3 773 4057 259 93 26 chr6 24756471 24757798 -124759239 - Lx6 LINE L1 -8 7452 6038 3 773 1593 208 46 5 chr6 24757809 24758182 -124758855 - L1_Mur2 LINE L1 -49 5828 5441 3 773 28109 112 19 13 chr6 24758177 24764093 -124752944 - L1_Mus3 LINE L1 0 6638 675 3 773 247 260 0 14 chr6 24764069 24764143 -124752894 - L1_Mus3 LINE L1 -6352 264 192 3 773 2713 160 24 69 chr6 24764161 24764809 -124752228 - L1_Mur2 LINE L1 -428 5449 4831 3 773 261 0 0 0 chr6 24764809 24764838 -124752199 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 773 2713 160 24 69 chr6 24764838 24764860 -124752177 - L1_Mur2 LINE L1 -1047 4830 4809 3 773 1948 178 31 8 chr6 24765006 24765364 -124751673 - RLTR17 LTR ERVK -326 366 1 3 773 6757 194 39 44 chr6 24765364 24766916 -124750121 - RMER3D-int LTR ERVK 0 2842 1292 3 773 1197 61 0 0 chr6 24766916 24767063 -124749974 - B1_Mm SINE Alu 0 147 1 3 773 6757 214 40 62 chr6 24767063 24767903 -124749134 - RMER3D-int LTR ERVK -1551 1291 1 3 773 2148 181 114 50 chr6 24767903 24768239 -124748798 - RLTR17 LTR ERVK 0 692 320 3 773 2606 57 45 3 chr6 24768239 24768592 -124748445 - L1Md_F2 LINE L1 0 6582 6215 3 773 2148 181 114 50 chr6 24768592 24768737 -124748300 - RLTR17 LTR ERVK -373 319 180 3 773 2466 86 36 0 chr6 24768920 24769257 -124747780 + MT2B2 LTR ERVL 2 350 -234 3 773 10664 34 19 1 chr6 24769267 24771243 -124745794 - L1Md_F2 LINE L1 -15 6567 4548 3 773 1621 119 8 0 chr6 24771243 24771486 -124745551 + MT2B2 LTR ERVL 337 581 -3 3 773 526 339 114 25 chr6 24772011 24772335 -124744702 - ORR1E LTR MaLR -6 353 1 3 773 387 0 0 0 chr6 24772507 24772550 -124744487 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 774 1010 126 5 37 chr6 24772684 24772874 -124744163 - Lx LINE L1 0 6654 6471 3 774 306 228 20 10 chr6 24773153 24773255 -124743782 + L1VL1 LINE L1 1 103 -6319 3 774 5272 70 3 3 chr6 24773243 24773975 -124743062 + L1Md_F2 LINE L1 505 1236 -5380 3 774 10428 62 6 1 chr6 24776665 24778015 -124739022 + L1Md_F2 LINE L1 4231 5586 -297 3 774 8045 46 0 1 chr6 24778016 24778998 -124738039 + L1Md_F2 LINE L1 5588 6568 -14 3 774 315 130 0 0 chr6 24779007 24779061 -124737976 + (A)n Simple_repeat Simple_repeat 1 54 0 3 774 317 272 104 9 chr6 24779180 24779295 -124737742 + MT2A LTR ERVL 408 533 0 3 774 303 330 0 0 chr6 24779603 24779691 -124737346 + B1F SINE Alu 3 90 -59 3 774 434 317 82 60 chr6 24779820 24780102 -124736935 - B4A SINE B4 0 292 5 3 774 398 171 26 0 chr6 24780368 24780444 -124736593 + URR1B DNA MER1_type 148 225 0 3 774 225 268 0 0 chr6 24780669 24780725 -124736312 - MTEa LTR MaLR -321 58 3 3 774 288 311 36 36 chr6 24781496 24781636 -124735401 - MER34-int LTR ERV1 -1241 6966 6827 3 774 629 338 36 46 chr6 24781994 24782382 -124734655 - MER34-int LTR ERV1 -1843 6364 5981 3 774 726 320 40 9 chr6 24782671 24782999 -124734038 - MER34-int LTR ERV1 -2573 5634 5297 3 774 240 278 198 60 chr6 24783332 24783615 -124733422 - MER34A LTR ERV1 -1 570 249 3 774 541 328 54 29 chr6 24783873 24784077 -124732960 - B3A SINE B2 -5 211 3 4 774 270 81 0 0 chr6 24784110 24784147 -124732890 + (CAAG)n Simple_repeat Simple_repeat 2 38 0 4 774 870 10 0 0 chr6 24784430 24784529 -124732508 + (TATATG)n Simple_repeat Simple_repeat 4 102 0 4 774 431 333 105 21 chr6 24784863 24785053 -124731984 + MER21B LTR ERV1 277 482 -381 4 774 343 317 47 27 chr6 24785134 24785283 -124731754 + MER21B LTR ERV1 648 799 -64 4 774 186 43 0 0 chr6 24785495 24785518 -124731519 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 774 463 307 54 0 chr6 24785936 24786102 -124730935 - Tigger7 DNA MER2_type -46 2445 2271 4 774 235 226 32 0 chr6 24786608 24786670 -124730367 - Lx9 LINE L1 -176 7468 7405 4 774 1470 244 103 55 chr6 24789288 24790225 -124726812 - L1_Rod LINE L1 -4099 1748 748 4 774 615 276 67 12 chr6 24790836 24791001 -124726036 - B3 SINE B2 -40 176 3 4 774 462 229 21 10 chr6 24791482 24791579 -124725458 + B3A SINE B2 6 103 -95 4 774 381 301 44 0 chr6 24792714 24792850 -124724187 - MIR SINE MIR -24 238 97 4 774 477 0 0 0 chr6 24792951 24793004 -124724033 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 774 1026 257 158 33 chr6 24793451 24793969 -124723068 - L1MA9 LINE L1 -66 6246 5664 4 774 741 320 68 16 chr6 24794106 24794427 -124722610 - MLT1A0 LTR MaLR -4 361 24 4 774 1341 225 30 13 chr6 24794537 24794839 -124722198 + ORR1D1 LTR MaLR 61 367 -7 4 774 1912 55 0 4 chr6 24794862 24795092 -124721945 + Lx9 LINE L1 5357 5586 -297 4 774 7960 48 5 1 chr6 24795092 24796085 -124720952 + L1Md_F3 LINE L1 5587 6583 -1 4 774 1912 150 0 41735 chr6 24796085 24796134 -124720903 + Lx9 LINE L1 5587 5592 -291 4 774 529 324 26 33 chr6 24796328 24796481 -124720556 + ID_B1 SINE B4 70 221 -3 4 774 403 320 0 0 chr6 24797953 24798053 -124718984 - B3A SINE B2 -98 100 1 4 774 1326 41 0 0 chr6 24798271 24798440 -124718597 + L1Md_F2 LINE L1 6402 6570 -12 4 774 310 363 9 0 chr6 24799052 24799184 -124717853 + B1F SINE Alu 14 148 -1 4 774 371 311 48 0 chr6 24800854 24800957 -124716080 - B1F2 SINE Alu -29 120 13 4 774 241 246 28 28 chr6 24801181 24801252 -124715785 + GA-rich Low_complexity Low_complexity 4 74 0 4 774 804 183 8 0 chr6 24801392 24801523 -124715514 - B1_Mus1 SINE Alu -7 141 10 4 774 677 131 19 25 chr6 24801686 24801718 -124715319 + polypyrimidine Low_complexity Low_complexity 127 158 0 4 774 1417 22 6 16 chr6 24801718 24801900 -124715137 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 4 774 677 131 19 25 chr6 24801900 24802024 -124715013 + CT-rich Low_complexity Low_complexity 3 126 0 4 774 693 295 104 33 chr6 24802068 24802338 -124714699 - B4A SINE B4 -1 291 3 4 774 238 194 27 27 chr6 24804652 24804726 -124712311 - Lx7 LINE L1 -17 7679 7606 4 774 272 300 0 0 chr6 24804843 24804903 -124712134 - Lx7 LINE L1 -420 7276 7217 4 774 2389 89 46 0 chr6 24805044 24805392 -124711645 - L1_Mus3 LINE L1 -6 6632 6269 4 774 4416 94 6 21 chr6 24805392 24806045 -124710992 + L1_Mus3 LINE L1 5646 6290 -348 4 774 246 284 0 97 chr6 24806386 24806443 -124710594 - MER34A LTR ERV1 -469 102 53 4 774 3121 128 129 8 chr6 24806443 24806979 -124710058 + MT2B LTR ERVL 1 601 0 4 774 246 284 0 97 chr6 24806979 24807034 -124710003 - MER34A LTR ERV1 -519 52 1 4 774 759 316 60 24 chr6 24807034 24807417 -124709620 - MER34-int LTR ERV1 0 8207 7811 4 774 443 335 66 29 chr6 24807420 24807767 -124709270 - MER34-int LTR ERV1 -1309 6898 6539 4 774 1257 261 50 18 chr6 24807779 24808180 -124708857 - MER34-int LTR ERV1 -1726 6481 6068 4 774 1341 338 77 30 chr6 24808362 24808486 -124708551 - MER34-int LTR ERV1 -2365 5842 5719 4 774 2671 162 82 6 chr6 24808486 24808977 -124708060 - RLTR11A LTR ERVK 0 528 1 4 774 1341 338 77 30 chr6 24808977 24809889 -124707148 - MER34-int LTR ERV1 -2489 5718 4757 4 774 278 382 57 0 chr6 24809904 24810027 -124707010 - MER34-int LTR ERV1 -8065 142 13 4 774 325 309 87 42 chr6 24810042 24810408 -124706629 - MER34A LTR ERV1 -29 542 128 4 774 23 54 0 0 chr6 24811055 24811092 -124705945 + AT_rich Low_complexity Low_complexity 1 37 0 4 774 614 357 126 40 chr6 24811399 24811749 -124705288 + MER21B LTR ERV1 260 639 -224 4 774 272 78 39 0 chr6 24811795 24811846 -124705191 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 4 774 686 169 247 6 chr6 24811952 24812130 -124704907 + URR1A DNA MER1_type 4 224 -2 4 774 366 322 28 55 chr6 24812578 24812613 -124704424 + MLT1A0 LTR MaLR 12 41 -324 4 774 333 0 0 0 chr6 24812613 24812650 -124704387 + (TATG)n Simple_repeat Simple_repeat 3 39 0 4 774 366 322 28 55 chr6 24812650 24812795 -124704242 + MLT1A0 LTR MaLR 42 187 -178 4 774 266 402 31 25 chr6 24812877 24813040 -124703997 - B3A SINE B2 -33 165 2 4 774 396 0 0 0 chr6 24813290 24813334 -124703703 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 774 673 252 29 0 chr6 24814495 24814634 -124702403 - B3A SINE B2 -16 182 40 4 774 21 0 0 0 chr6 24814648 24814669 -124702368 + AT_rich Low_complexity Low_complexity 1 21 0 4 774 27 29 0 0 chr6 24815230 24815264 -124701773 + AT_rich Low_complexity Low_complexity 1 34 0 4 774 21 36 0 0 chr6 24815435 24815463 -124701574 + AT_rich Low_complexity Low_complexity 1 28 0 4 774 186 43 0 0 chr6 24815463 24815486 -124701551 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 774 25 0 0 0 chr6 24815519 24815544 -124701493 + AT_rich Low_complexity Low_complexity 1 25 0 4 774 2695 303 52 35 chr6 24815570 24816657 -124700380 - Lx9 LINE L1 -129 7515 6411 4 774 2004 256 48 78 chr6 24816957 24817757 -124699280 + L1_Rod LINE L1 4912 5687 -160 4 774 3378 28 5 0 chr6 24818184 24818578 -124698459 - MTA_Mm LTR MaLR 0 396 1 4 774 8910 22 3 1 chr6 24818578 24819668 -124697369 - MTA_Mm-int LTR MaLR 0 1098 7 4 774 3351 33 5 0 chr6 24819670 24820064 -124696973 - MTA_Mm LTR MaLR 0 396 1 4 774 280 339 18 9 chr6 24820473 24820586 -124696451 + PB1D10 SINE Alu 1 114 -3 4 774 286 311 0 16 chr6 24820597 24820659 -124696378 + ID4_ SINE ID 14 74 -9 4 774 22860 84 21 5 chr6 24820787 24822085 -124694952 - L1_Mus2 LINE L1 0 6566 5236 4 774 486 0 0 0 chr6 24822085 24822139 -124694898 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 774 22860 111 15 15 chr6 24822139 24824230 -124692807 - L1_Mus2 LINE L1 -648 5235 3173 4 774 522 0 0 0 chr6 24824230 24824288 -124692749 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 4 774 22860 111 15 15 chr6 24824288 24825089 -124691948 - L1_Mus2 LINE L1 -2711 3172 2357 4 774 2527 197 66 20 chr6 24825082 24825673 -124691364 - L1_Mus2 LINE L1 -5428 1188 571 4 774 603 323 8 68 chr6 24827337 24827573 -124689464 - B4 SINE B4 -69 223 2 4 774 625 137 15 0 chr6 24829285 24829416 -124687621 + (TG)n Simple_repeat Simple_repeat 1 133 0 4 774 641 261 0 0 chr6 24829575 24829713 -124687324 + B1_Mus1 SINE Alu 2 139 -9 4 774 25467 80 3 1 chr6 24830125 24835365 -124681672 + L1Md_F2 LINE L1 331 5586 -297 4 774 8042 72 4 6 chr6 24835365 24836363 -124680674 + L1Md_F2 LINE L1 5587 6582 0 4 774 318 234 60 60 chr6 24836600 24836700 -124680337 + MER63D DNA AcHobo 1 100 -961 4 774 2590 143 5 0 chr6 24836761 24837153 -124679884 - Lx LINE L1 -8 6646 6253 4 774 33 25 0 0 chr6 24837176 24837216 -124679821 + AT_rich Low_complexity Low_complexity 1 40 0 4 774 340 271 62 0 chr6 24837342 24837438 -124679599 + MER63D DNA AcHobo 252 353 -708 4 774 1552 261 64 17 chr6 24837644 24838065 -124678972 + Lx6 LINE L1 7003 7443 -17 4 774 1119 96 0 0 chr6 24838065 24838200 -124678837 + B1_Mus1 SINE Alu 1 135 -13 4 774 254 16 77 31 chr6 24838200 24838265 -124678772 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 4 774 21 0 0 0 chr6 24838286 24838307 -124678730 + AT_rich Low_complexity Low_complexity 1 21 0 4 774 252 198 43 32 chr6 24838532 24838626 -124678411 + A-rich Low_complexity Low_complexity 2 96 0 4 774 537 16 0 0 chr6 24838638 24838700 -124678337 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 774 216 0 0 0 chr6 24838757 24838781 -124678256 + (T)n Simple_repeat Simple_repeat 1 24 0 4 774 1206 69 7 0 chr6 24838781 24838926 -124678111 - B1_Mm SINE Alu 0 147 2 4 774 955 25 0 16 chr6 24839227 24839351 -124677686 + (TTC)n Simple_repeat Simple_repeat 3 124 0 4 774 390 21 0 0 chr6 24839547 24839594 -124677443 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 774 3354 226 69 28 chr6 24839594 24840406 -124676631 - Lx7 LINE L1 -280 7416 6571 4 774 4057 171 62 1 chr6 24842370 24843101 -124673936 - MERVL_2A-int LTR ERVL -2616 3145 2371 4 774 2150 217 93 199 chr6 24843103 24844081 -124672956 - RMER1B Other Other -4 1062 150 4 774 280 160 40 0 chr6 24844081 24844131 -124672906 + RLTR10E LTR ERVK 1 52 -259 4 774 2150 217 93 199 chr6 24844131 24844242 -124672795 - RMER1B Other Other -4 149 45 4 774 3196 175 74 19 chr6 24844779 24845915 -124671122 - MERVL_2A-int LTR ERVL -3361 2400 1203 4 774 210 37 0 0 chr6 24845915 24845942 -124671095 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 774 189 0 0 0 chr6 24845946 24845967 -124671070 + (CAA)n Simple_repeat Simple_repeat 2 22 0 4 774 822 94 0 38 chr6 24846014 24846146 -124670891 - L1_Mm LINE L1 -491 5392 5266 4 774 3170 65 0 3 chr6 24846146 24846529 -124670508 + L1_Mus2 LINE L1 6184 6565 -1 4 774 5835 184 51 11 chr6 24846599 24847727 -124669310 - MERVL_2A-int LTR ERVL -4588 1173 1 4 774 736 48 0 46 chr6 24847779 24847888 -124669149 - Lx LINE L1 -7 6647 6544 4 774 399 154 0 30 chr6 24847888 24847955 -124669082 + MERVL_2A-int LTR ERVL 5281 5345 -416 4 774 228 207 0 49 chr6 24848056 24848117 -124668920 + ORR1A3-int LTR MaLR 567 624 -1339 4 774 516 160 104 74 chr6 24848117 24848252 -124668785 + MERVL_2A-int LTR ERVL 5621 5759 -2 4 774 658 224 67 253 chr6 24848254 24848351 -124668686 + MT2A LTR ERVL 1 87 -446 4 774 208 0 62 0 chr6 24848351 24848383 -124668654 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 774 658 211 45 150 chr6 24848383 24848682 -124668355 + MT2A LTR ERVL 88 455 -146 4 774 429 20 0 0 chr6 24849269 24849319 -124667718 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 774 492 286 53 26 chr6 24849322 24849473 -124667564 - B3A SINE B2 -38 160 6 4 774 934 159 6 0 chr6 24849892 24850051 -124666986 - L1_Mur2 LINE L1 -516 5668 5466 4 774 420 20 0 0 chr6 24850070 24850119 -124666918 + (TAA)n Simple_repeat Simple_repeat 1 49 0 4 774 2040 195 32 27 chr6 24850638 24851043 -124665994 + MTC LTR MaLR 7 413 -8 4 774 211 271 0 0 chr6 24851090 24851149 -124665888 + MIR SINE MIR 92 150 -112 4 774 336 77 0 0 chr6 24851929 24851981 -124665056 + (T)n Simple_repeat Simple_repeat 1 52 0 4 774 192 135 0 0 chr6 24852929 24852966 -124664071 + (A)n Simple_repeat Simple_repeat 1 37 0 4 774 862 306 147 19 chr6 24853545 24854014 -124663023 + Lx8 LINE L1 6822 7350 -123 4 774 1605 171 161 6 chr6 24854035 24854346 -124662691 - ORR1B2 LTR MaLR -8 359 1 4 774 272 267 53 13 chr6 24854365 24854441 -124662596 + Lx8 LINE L1 7387 7465 -8 4 774 759 22 0 0 chr6 24854923 24855012 -124662025 + (TCC)n Simple_repeat Simple_repeat 3 91 0 4 774 232 333 0 14 chr6 24855013 24855086 -124661951 - ID2 SINE ID -3 80 9 4 774 3527 167 254 6 chr6 24855127 24855951 -124661086 - RLTR25B LTR ERVK 0 1028 1 4 774 254 379 44 6 chr6 24856056 24856239 -124660798 + L2 LINE L2 2589 2778 -641 4 774 34 65 0 0 chr6 24856263 24856325 -124660712 + AT_rich Low_complexity Low_complexity 1 62 0 4 774 848 268 134 34 chr6 24856325 24856742 -124660295 - L1MA9 LINE L1 -40 6272 5814 5 774 338 358 51 22 chr6 24856963 24857100 -124659937 - MLT1B LTR MaLR -15 375 235 5 774 327 270 0 13 chr6 24857123 24857198 -124659839 - MLT1B LTR MaLR -210 155 82 5 774 410 289 66 15 chr6 24857227 24857364 -124659673 - MLT1A0 LTR MaLR -210 155 12 5 774 348 231 4 73 chr6 24857540 24857648 -124659389 - L1MA9 LINE L1 -130 6059 5956 5 774 433 281 61 3 chr6 24858423 24858553 -124658484 + B1F1 SINE Alu 16 148 -1 5 774 268 333 16 87 chr6 24859323 24859507 -124657530 + B4 SINE B4 2 172 -120 5 774 239 312 26 0 chr6 24859544 24859621 -124657416 + RSINE1 SINE B4 74 152 -13 5 774 491 31 15 0 chr6 24859640 24859705 -124657332 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 774 307 274 131 22 chr6 24859753 24859936 -124657101 - L1ME3A LINE L1 -191 5982 5780 5 774 690 13 0 0 chr6 24861226 24861305 -124655732 + (TCCC)n Simple_repeat Simple_repeat 3 81 0 5 774 633 14 0 0 chr6 24861305 24861379 -124655658 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 5 774 1256 83 50 6 chr6 24861461 24861642 -124655395 + B2_Mm1t SINE B2 3 191 -2 5 774 4804 89 27 6 chr6 24862281 24862911 -124654126 - L1_Mus3 LINE L1 -3 6635 5993 5 774 187 305 81 40 chr6 24863285 24863384 -124653653 + L3 LINE CR1 3357 3459 -1030 5 774 1626 281 55 8 chr6 24863685 24864162 -124652875 + Lx8 LINE L1 6966 7464 -9 5 774 307 349 73 41 chr6 24864409 24864726 -124652311 - L2a LINE L2 0 3426 3100 5 774 522 98 9 81 chr6 24864911 24865022 -124652015 + Lx LINE L1 6552 6654 0 5 774 2640 99 32 18 chr6 24865022 24865120 -124651917 - Lx LINE L1 -662 5992 5895 5 774 3401 53 8 0 chr6 24865120 24865513 -124651524 + MTA_Mm LTR MaLR 1 396 0 5 774 2640 99 32 18 chr6 24865513 24865541 -124651496 - Lx LINE L1 -760 5894 5873 5 774 342 0 0 0 chr6 24865541 24865579 -124651458 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 5 774 7961 135 12 6 chr6 24865579 24866449 -124650588 - Lx LINE L1 -782 5872 4988 5 774 234 0 0 0 chr6 24866449 24866475 -124650562 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 774 7961 151 3 1 chr6 24866475 24866904 -124650133 - Lx LINE L1 -896 4987 4558 5 774 4284 153 15 13 chr6 24866904 24867580 -124649457 + Lx LINE L1 5978 6654 0 5 774 426 335 86 20 chr6 24867700 24867898 -124649139 - RMER15 LTR ERVL -1 574 364 5 774 437 341 6 11 chr6 24867899 24868077 -124648960 - Lx8 LINE L1 -251 7222 7046 5 774 804 263 103 71 chr6 24869114 24869454 -124647583 + RMER13A LTR ERVK 26 376 -484 5 774 274 276 0 13 chr6 24869633 24869710 -124647327 - MIR SINE MIR -96 166 91 5 774 208 200 22 0 chr6 24869768 24869858 -124647179 + GA-rich Low_complexity Low_complexity 1 92 0 5 774 258 250 13 0 chr6 24869884 24869960 -124647077 + GA-rich Low_complexity Low_complexity 2 78 0 5 774 671 227 45 8 chr6 24869961 24870094 -124646943 - RSINE1 SINE B4 -20 145 8 5 774 22 0 0 0 chr6 24870368 24870390 -124646647 + AT_rich Low_complexity Low_complexity 1 22 0 5 774 327 71 92 0 chr6 24870629 24870727 -124646310 + (TA)n Simple_repeat Simple_repeat 2 108 0 5 774 180 0 0 0 chr6 24871320 24871340 -124645697 + (T)n Simple_repeat Simple_repeat 1 20 0 5 774 384 340 65 30 chr6 24871493 24871693 -124645344 + MLT1C LTR MaLR 227 433 -34 5 774 443 273 105 6 chr6 24871741 24871903 -124645134 - MER3 DNA MER1_type -25 184 7 5 774 1139 260 99 16 chr6 24871954 24872318 -124644719 + RMER10A LTR ERVL 1 394 -48 5 774 387 241 27 18 chr6 24872318 24872428 -124644609 - MTEb LTR MaLR 0 379 269 5 774 229 367 89 64 chr6 24872831 24872988 -124644049 + RSINE1 SINE B4 1 161 -4 5 774 180 245 0 0 chr6 24872998 24873051 -124643986 + (CAGA)n Simple_repeat Simple_repeat 1 53 0 5 774 24 32 0 0 chr6 24873082 24873113 -124643924 + AT_rich Low_complexity Low_complexity 1 31 0 5 774 234 0 0 0 chr6 24873576 24873602 -124643435 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 774 323 326 123 28 chr6 24873907 24874195 -124642842 + MLT1A LTR MaLR 46 389 -1 5 774 4927 157 53 49 chr6 24875196 24876150 -124640887 - RMER17B LTR ERVK 0 958 1 5 774 2149 127 9 0 chr6 24876326 24876642 -124640395 - ORR1A2 LTR MaLR -8 319 1 5 774 3828 140 3 5 chr6 24876642 24877238 -124639799 - ORR1A2-int LTR MaLR 0 1963 1369 5 774 3028 24 0 43 chr6 24877238 24877590 -124639447 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 774 21489 41 25 14 chr6 24877600 24880212 -124636825 + IAPEz-int LTR ERVK 35 2674 -3807 5 774 9585 24 2 5 chr6 24880187 24881272 -124635765 + IAPEz-int LTR ERVK 5400 6481 0 5 774 3028 24 0 43 chr6 24881272 24881624 -124635413 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 774 1713 115 27 0 chr6 24881624 24881884 -124635153 - ORR1A2-int LTR MaLR -589 1374 1108 5 774 7381 126 74 3 chr6 24881889 24883401 -124633636 + L1_Mus1 LINE L1 4889 6567 0 5 774 4973 146 11 60 chr6 24883428 24883577 -124633460 - ORR1A2-int LTR MaLR -887 905 764 5 774 7916 49 29 1 chr6 24883577 24884513 -124632524 + L1Md_F2 LINE L1 5618 6579 -3 5 774 4973 146 11 60 chr6 24884513 24884928 -124632109 - ORR1A2-int LTR MaLR -1029 763 362 5 774 4019 124 60 22 chr6 24884928 24885549 -124631488 - Lx2A LINE L1 -6 7002 6359 5 774 4973 146 11 60 chr6 24885549 24885935 -124631102 - ORR1A2-int LTR MaLR -1431 361 1 5 774 2218 102 22 0 chr6 24885935 24886250 -124630787 - ORR1A2 LTR MaLR 0 327 6 5 774 6499 201 31 18 chr6 24886693 24887931 -124629106 - Lx5 LINE L1 -3 7047 5794 5 774 6887 106 55 9 chr6 24887971 24889107 -124627930 + L1_Mus3 LINE L1 5369 6636 -2 5 774 867 147 6 25 chr6 24889100 24889261 -124627776 + L1_Mur2 LINE L1 5537 5694 -183 5 774 1392 252 71 64 chr6 24890037 24890579 -124626458 - L1M2 LINE L1 -1039 5104 4560 5 774 993 116 0 0 chr6 24890579 24890717 -124626320 - B1_Mus1 SINE Alu -10 138 1 5 774 1392 252 71 64 chr6 24890717 24890819 -124626218 - L1M2 LINE L1 -1584 4559 4455 5 774 433 349 108 0 chr6 24890860 24891072 -124625965 + MLT2B4 LTR ERVL 1 235 -321 5 774 207 163 47 0 chr6 24891091 24891134 -124625903 + (TCTCTG)n Simple_repeat Simple_repeat 3 47 0 5 774 38067 24 1 6 chr6 24891737 24897929 -124619108 - L1Md_T LINE L1 0 6582 425 5 774 698 317 79 23 chr6 24899207 24899472 -124617565 - B4A SINE B4 -11 281 2 5 774 1227 41 0 0 chr6 24899781 24899927 -124617110 - B1_Mus1 SINE Alu -1 147 2 5 774 237 222 0 0 chr6 24899941 24900004 -124617033 + GA-rich Low_complexity Low_complexity 2 64 0 5 774 27 0 0 0 chr6 24900681 24900708 -124616329 + AT_rich Low_complexity Low_complexity 1 27 0 5 774 327 349 106 0 chr6 24901390 24901522 -124615515 - PB1D10 SINE Alu -3 146 1 5 774 251 333 95 47 chr6 24901937 24902085 -124614952 + MIRb SINE MIR 3 157 -111 5 774 213 65 0 0 chr6 24903045 24903076 -124613961 + (CAA)n Simple_repeat Simple_repeat 1 31 0 5 774 189 171 0 0 chr6 24903645 24903680 -124613357 + GA-rich Low_complexity Low_complexity 1 35 0 5 775 29 47 0 0 chr6 24905278 24905321 -124611716 + GC_rich Low_complexity Low_complexity 1 43 0 5 775 22 56 0 0 chr6 24906184 24906220 -124610817 + GC_rich Low_complexity Low_complexity 1 36 0 5 775 1367 26 19 19 chr6 24906824 24907143 -124609894 + (TG)n Simple_repeat Simple_repeat 1 319 0 5 775 702 167 0 0 chr6 24907799 24907979 -124609058 + CT-rich Low_complexity Low_complexity 1 180 0 5 775 560 209 0 28 chr6 24907981 24908089 -124608948 - B1_Mur3 SINE Alu 0 149 45 5 775 221 179 216 95 chr6 24908227 24908301 -124608736 + PB1D9 SINE Alu 32 114 -6 5 775 221 286 77 13 chr6 24908705 24908783 -124608254 - B1F2 SINE Alu -61 88 6 5 775 227 266 0 30 chr6 24909302 24909368 -124607669 - MLT1A1 LTR MaLR -25 383 320 5 775 21 0 0 0 chr6 24909830 24909851 -124607186 + AT_rich Low_complexity Low_complexity 1 21 0 5 775 378 0 0 0 chr6 24909898 24909940 -124607097 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 775 2922 229 83 12 chr6 24910117 24910873 -124606164 + Lx6 LINE L1 6636 7445 -15 5 775 298 272 119 67 chr6 24911292 24911426 -124605611 + MER57C2 LTR ERV1 9 149 -285 5 775 251 157 0 19 chr6 24911469 24911521 -124605516 + CT-rich Low_complexity Low_complexity 2 52 0 5 775 260 215 62 0 chr6 24911525 24911590 -124605447 - ID4 SINE ID -10 73 5 5 775 24 0 0 0 chr6 24911797 24911821 -124605216 + AT_rich Low_complexity Low_complexity 1 24 0 5 775 28 29 0 0 chr6 24912387 24912422 -124604615 + AT_rich Low_complexity Low_complexity 1 35 0 5 775 28 29 0 0 chr6 24913129 24913164 -124603873 + AT_rich Low_complexity Low_complexity 1 35 0 5 775 340 333 40 7 chr6 24914093 24914241 -124602796 + RCHARR1 DNA MER1_type 54 206 -768 5 775 628 221 60 77 chr6 24914300 24914535 -124602502 + MER57A-int LTR ERV1 5425 5655 -532 5 775 730 263 82 14 chr6 24914643 24914925 -124602112 + MER57A-int LTR ERV1 5645 5945 -242 5 775 669 117 0 0 chr6 24914965 24915093 -124601944 + (CTG)n Simple_repeat Simple_repeat 2 129 0 5 775 264 152 0 0 chr6 24915093 24915159 -124601878 + CT-rich Low_complexity Low_complexity 3 68 0 5 775 687 192 8 0 chr6 24915580 24915705 -124601332 - RLTR14 LTR ERV1 -20 362 237 5 775 309 26 0 0 chr6 24915705 24915743 -124601294 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 5 775 1090 175 5 15 chr6 24915759 24915956 -124601081 - RLTR14 LTR ERV1 -137 245 51 5 775 1791 176 21 83 chr6 24915961 24916343 -124600694 - ORR1B1 LTR MaLR -8 386 1 5 775 241 100 0 111 chr6 24916343 24916388 -124600649 - RLTR14 LTR ERV1 -328 54 15 5 775 331 324 32 32 chr6 24916424 24916609 -124600428 + MER57C2 LTR ERV1 250 434 0 5 775 291 175 0 0 chr6 24916794 24916851 -124600186 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 775 515 358 47 36 chr6 24916868 24916928 -124600109 - B4A SINE B4 -10 282 217 5 775 2231 29 22 0 chr6 24916928 24917201 -124599836 - L1Md_F3 LINE L1 -3 6581 6303 5 775 515 358 47 36 chr6 24917201 24917418 -124599619 - B4A SINE B4 -76 216 2 5 775 291 28 0 0 chr6 24917484 24917520 -124599517 + (TTG)n Simple_repeat Simple_repeat 2 37 0 5 775 448 299 31 0 chr6 24917805 24917932 -124599105 - RSINE1 SINE B4 -33 132 2 5 775 404 319 67 44 chr6 24919038 24919503 -124597534 - LTR48B LTR ERV1 -13 774 101 5 775 231 366 69 10 chr6 24919636 24919738 -124597299 - L2b LINE L2 -14 3361 3254 5 775 414 0 0 0 chr6 24920291 24920337 -124596700 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 775 417 356 33 7 chr6 24920374 24920524 -124596513 - MLT1A LTR MaLR 0 365 212 5 775 450 0 0 0 chr6 24920563 24920613 -124596424 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 775 421 268 94 8 chr6 24920751 24920879 -124596158 - MLT1A LTR MaLR -217 157 19 5 775 341 188 22 45 chr6 24921169 24921258 -124595779 + HAL1-3A_ME LINE L1 1942 2028 -830 5 775 591 139 0 0 chr6 24921268 24921369 -124595668 + (TA)n Simple_repeat Simple_repeat 1 101 0 5 775 1073 287 32 94 chr6 24923837 24924185 -124592852 + MTEa LTR MaLR 1 331 -48 5 775 2289 119 0 6 chr6 24924185 24924514 -124592523 - ORR1A4 LTR MaLR 0 329 3 6 775 1073 287 32 94 chr6 24924514 24924569 -124592468 + MTEa LTR MaLR 332 379 0 5 775 257 313 141 28 chr6 24925018 24925452 -124591585 - L1MC LINE L1 -2023 5859 5377 6 775 285 146 0 0 chr6 24925848 24925896 -124591141 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 6 775 320 0 0 24 chr6 24926144 24926185 -124590852 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 775 255 218 20 10 chr6 24926597 24926699 -124590338 + (TA)n Simple_repeat Simple_repeat 2 104 0 6 775 981 16 16 8 chr6 24926802 24926930 -124590107 + (TTC)n Simple_repeat Simple_repeat 3 131 0 6 775 629 66 11 0 chr6 24927635 24927726 -124589311 + (GA)n Simple_repeat Simple_repeat 2 93 0 6 775 21 36 0 0 chr6 24927813 24927841 -124589196 + AT_rich Low_complexity Low_complexity 1 28 0 6 775 210 233 0 0 chr6 24928138 24928181 -124588856 + MIRb SINE MIR 198 240 -28 6 775 1188 147 29 0 chr6 24928316 24928520 -124588517 - Lx2B LINE L1 -5 7003 6794 6 775 2600 154 15 4 chr6 24928520 24929001 -124588036 - Lx2B LINE L1 -369 6631 6146 6 775 3407 126 11 2 chr6 24929002 24929774 -124587263 + Lx2 LINE L1 5357 6133 -864 6 775 1146 251 0 0 chr6 24930110 24930333 -124586704 + RMER6D LTR ERVK 483 705 -15 6 775 331 306 149 0 chr6 24930372 24930493 -124586544 - RSINE1 SINE B4 -10 155 17 6 775 279 173 0 0 chr6 24930571 24930623 -124586414 + A-rich Low_complexity Low_complexity 2 53 0 6 775 2990 93 7 35 chr6 24931061 24931519 -124585518 + L1Md_F2 LINE L1 6138 6582 0 6 775 23 0 0 0 chr6 24931685 24931708 -124585329 + AT_rich Low_complexity Low_complexity 1 23 0 6 775 1283 141 140 4 chr6 24931852 24932102 -124584935 - Lx LINE L1 -5 6649 6366 6 775 458 17 17 0 chr6 24932168 24932227 -124584810 + (TTTTG)n Simple_repeat Simple_repeat 4 63 0 6 775 1160 84 6 0 chr6 24932389 24932555 -124584482 + (TTCTCC)n Simple_repeat Simple_repeat 1 167 0 6 775 633 90 0 0 chr6 24932555 24932644 -124584393 + (TCCCC)n Simple_repeat Simple_repeat 4 92 0 6 775 976 261 5 14 chr6 24932743 24932961 -124584076 - B3 SINE B2 0 216 1 6 775 445 359 0 27 chr6 24933007 24933153 -124583884 + B4A SINE B4 149 290 -2 6 775 374 305 158 16 chr6 24933427 24933617 -124583420 + ID_B1 SINE B4 2 218 -6 6 775 202 368 19 19 chr6 24933690 24933798 -124583239 - MIR SINE MIR -140 122 15 6 775 288 0 0 0 chr6 24934426 24934458 -124582579 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 775 691 138 0 31 chr6 24935407 24935534 -124581503 - L1_Mus2 LINE L1 -34 6532 6410 6 775 1174 146 229 0 chr6 24935535 24935788 -124581249 - Lx3B LINE L1 -11 6962 6652 6 775 717 53 0 0 chr6 24936030 24936124 -124580913 + (TTCC)n Simple_repeat Simple_repeat 2 95 0 6 775 183 80 0 0 chr6 24936124 24936149 -124580888 + (TTCTCC)n Simple_repeat Simple_repeat 3 27 0 6 775 265 322 55 44 chr6 24936151 24936192 -124580845 + LTR78 LTR ERV1 853 892 -412 6 775 1523 138 47 33 chr6 24936192 24936491 -124580546 - Lx3_Mus LINE L1 -1 7008 6706 6 775 265 322 55 44 chr6 24936491 24936540 -124580497 + LTR78 LTR ERV1 893 944 -360 6 775 3771 104 31 20 chr6 24936540 24937178 -124579859 + Lx3_Mus LINE L1 6051 6695 -314 6 775 202 287 108 56 chr6 24937820 24937993 -124579044 - MIR3 SINE MIR -10 198 13 6 775 354 325 170 18 chr6 24938602 24938878 -124578159 - MLT1D LTR MaLR -9 496 179 6 775 644 282 44 19 chr6 24939893 24940099 -124576938 + B3 SINE B2 1 211 -5 6 775 257 316 0 0 chr6 24940146 24940225 -124576812 - Lx8 LINE L1 -434 7039 6961 6 775 933 316 87 12 chr6 24940265 24940598 -124576439 + MTD LTR MaLR 48 405 -14 6 775 727 52 0 0 chr6 24940761 24940858 -124576179 + Lx2 LINE L1 6547 6643 -354 6 775 1513 121 0 0 chr6 24940858 24941081 -124575956 + Lx2 LINE L1 6775 6997 0 6 775 201 268 0 0 chr6 24941154 24941210 -124575827 + T-rich Low_complexity Low_complexity 1 56 0 6 775 3045 109 36 0 chr6 24941843 24942291 -124574746 - L1_Mus3 LINE L1 -2 6636 6173 6 775 986 327 19 4 chr6 24942484 24942751 -124574286 + B4A SINE B4 8 278 -14 6 775 369 0 0 0 chr6 24942792 24942833 -124574204 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 775 22 35 0 0 chr6 24943080 24943109 -124573928 + AT_rich Low_complexity Low_complexity 1 29 0 6 775 385 351 97 59 chr6 24943378 24943897 -124573140 - MLT2F LTR ERVL -153 510 1 6 775 381 301 37 0 chr6 24945497 24945633 -124571404 + B1F SINE Alu 1 141 -8 6 775 316 289 79 0 chr6 24945707 24945821 -124571216 + L1MB2 LINE L1 6032 6154 -17 6 775 448 256 72 44 chr6 24945857 24946037 -124571000 + Lx8 LINE L1 7287 7471 -2 6 775 22 0 0 0 chr6 24946607 24946629 -124570408 + AT_rich Low_complexity Low_complexity 1 22 0 6 775 10104 120 38 13 chr6 24946903 24949910 -124567127 + L1VL2 LINE L1 395 4488 -1389 6 775 7267 94 17 9 chr6 24949916 24951007 -124566030 + L1_Mus3 LINE L1 5537 6635 -3 6 775 254 325 79 24 chr6 24951442 24951568 -124565469 - MER94 DNA AcHobo 0 134 2 6 775 204 40 0 0 chr6 24952678 24952703 -124564334 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 775 1731 293 53 13 chr6 24953996 24954560 -124562477 - Lx6 LINE L1 0 7460 6496 6 775 1059 286 55 33 chr6 24954579 24955019 -124562018 - Lx6 LINE L1 -676 6374 5897 6 775 24 53 0 0 chr6 24955449 24955487 -124561550 + AT_rich Low_complexity Low_complexity 1 38 0 6 775 25 0 0 0 chr6 24955589 24955614 -124561423 + AT_rich Low_complexity Low_complexity 1 25 0 6 775 330 26 0 0 chr6 24956628 24956667 -124560370 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 775 687 62 0 0 chr6 24956667 24956763 -124560274 + (GA)n Simple_repeat Simple_repeat 2 98 0 6 775 718 365 131 12 chr6 24956765 24957253 -124559784 + Zaphod DNA Tip100 93 638 -3393 6 775 27 62 0 0 chr6 24957308 24957356 -124559681 + AT_rich Low_complexity Low_complexity 1 48 0 6 775 736 212 20 7 chr6 24957500 24957647 -124559390 - B1_Mur4 SINE Alu -1 149 1 6 775 484 353 7 24 chr6 24957706 24957996 -124559041 + Lx9 LINE L1 7141 7425 -219 6 775 502 255 148 29 chr6 24958072 24958282 -124558755 + Lx8 LINE L1 7134 7368 -105 6 775 21 0 0 0 chr6 24958346 24958367 -124558670 + AT_rich Low_complexity Low_complexity 1 21 0 6 775 8608 136 12 22 chr6 24958586 24960800 -124556237 + Lx LINE L1 4462 6649 -5 6 775 1484 167 134 62 chr6 24961468 24961826 -124555211 + ORR1C2 LTR MaLR 1 384 0 6 775 201 314 94 24 chr6 24963031 24963158 -124553879 + MIRb SINE MIR 104 239 -29 6 775 212 304 0 18 chr6 24963181 24963238 -124553799 + polypyrimidine Low_complexity Low_complexity 4 59 0 6 775 358 320 92 51 chr6 24964000 24964273 -124552764 + Charlie26a DNA MER1_type 21 304 -21 6 775 493 14 14 0 chr6 24964281 24964350 -124552687 - L1Md_F2 LINE L1 0 6582 6513 6 775 5154 46 15 3 chr6 24964351 24965006 -124552031 + L1_Mm LINE L1 5018 5680 -203 6 775 291 268 0 40 chr6 24965641 24965715 -124551322 - PB1 SINE Alu -31 96 26 6 775 239 73 0 47 chr6 24965872 24965915 -124551122 + (TTG)n Simple_repeat Simple_repeat 2 42 0 6 775 615 250 0 7 chr6 24965915 24966052 -124550985 - B1_Mur4 SINE Alu -10 140 5 6 775 306 0 0 0 chr6 24966060 24966094 -124550943 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 775 450 0 0 0 chr6 24966094 24966143 -124550894 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 775 369 161 25 82 chr6 24966784 24966906 -124550131 - Lx9 LINE L1 -1410 6234 6120 6 775 2222 232 77 2 chr6 24966918 24967492 -124549545 + Lx9 LINE L1 7028 7644 0 6 775 615 333 85 32 chr6 24968298 24968735 -124548302 - RMER5 LTR ERV1 -28 506 47 6 775 567 285 138 90 chr6 24969092 24969381 -124547656 + MLT1A1 LTR MaLR 2 347 -61 6 775 711 329 42 4 chr6 24969359 24969647 -124547390 - ORR1E LTR MaLR -48 331 10 6 775 3204 39 15 0 chr6 24971421 24971811 -124545226 - MTA_Mm LTR MaLR 0 396 1 6 775 341 275 130 103 chr6 24971972 24972118 -124544919 + RSINE1 SINE B4 16 165 0 6 775 24 0 0 0 chr6 24972481 24972505 -124544532 + AT_rich Low_complexity Low_complexity 1 24 0 6 775 821 183 109 5 chr6 24972657 24972877 -124544160 - Lx9 LINE L1 -2 7642 7400 6 775 1084 257 82 7 chr6 24973019 24973325 -124543712 + Lx8 LINE L1 6374 6702 -771 6 775 3722 95 150 77 chr6 24973318 24973867 -124543170 + L1_Mus3 LINE L1 5872 6479 -159 6 775 2107 132 68 50 chr6 24973867 24974265 -124542772 - RLTR44A LTR ERVK 0 405 1 6 775 3722 95 150 77 chr6 24974265 24974430 -124542607 + L1_Mus3 LINE L1 6480 6638 0 6 775 455 285 15 37 chr6 24974426 24974561 -124542476 - Lx8 LINE L1 -234 7239 7108 6 775 211 316 53 0 chr6 24974691 24974748 -124542289 + ID2 SINE ID 18 77 -6 6 775 785 280 29 10 chr6 24975495 24975704 -124541333 - ID_B1 SINE B4 -3 221 9 6 775 27 29 0 0 chr6 24977277 24977311 -124539726 + AT_rich Low_complexity Low_complexity 1 34 0 6 775 230 307 163 102 chr6 24977707 24978001 -124539036 + MLT1A0 LTR MaLR 35 346 -19 6 775 512 282 33 24 chr6 24978087 24978298 -124538739 + L1M2 LINE L1 5409 5621 -679 6 775 351 0 0 0 chr6 24978326 24978365 -124538672 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 775 959 294 114 74 chr6 24978441 24979659 -124537378 + L1M2 LINE L1 3656 4922 -1221 6 775 8570 114 47 15 chr6 24979680 24981296 -124535741 - Lx3A LINE L1 0 6981 5336 6 775 973 195 70 0 chr6 24982536 24982721 -124534316 + URR1A DNA MER1_type 1 198 -28 6 775 297 128 0 0 chr6 24985084 24985131 -124531906 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 775 256 295 42 35 chr6 24985134 24985278 -124531759 - L1M5 LINE L1 -1979 4167 4023 6 775 619 258 87 46 chr6 24985339 24985558 -124531479 + MTE2a LTR MaLR 133 360 -19 6 775 1529 280 23 25 chr6 24985558 24986086 -124530951 + Lx8 LINE L1 6384 6910 -563 7 775 701 102 0 0 chr6 24986148 24986246 -124530791 - B2_Mm2 SINE B2 -94 101 4 7 775 1451 275 75 35 chr6 24986343 24986886 -124530151 - Lx9 LINE L1 -44 7600 7036 7 775 291 0 0 68 chr6 24987316 24987360 -124529677 + B1_Mm SINE Alu 106 146 -1 7 775 328 140 21 31 chr6 24987424 24987520 -124529517 + (TA)n Simple_repeat Simple_repeat 1 95 0 7 775 2024 84 6 54 chr6 24988223 24988539 -124528498 - L1_Mus2 LINE L1 0 6566 6266 7 775 921 302 130 31 chr6 24989089 24989698 -124527339 - L1MC1 LINE L1 -11 6322 5654 7 775 283 287 40 73 chr6 24989724 24989785 -124527252 - L1MC1 LINE L1 -752 5581 5525 7 775 189 0 0 0 chr6 24989793 24989814 -124527223 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 7 775 668 127 0 18 chr6 24989814 24989917 -124527120 + Lx LINE L1 6536 6638 -16 7 775 741 93 0 0 chr6 24989919 24990026 -124527011 + (GAAAA)n Simple_repeat Simple_repeat 5 111 0 7 775 283 287 40 73 chr6 24990026 24990085 -124526952 - L1MC1 LINE L1 -809 5524 5462 7 775 449 278 118 91 chr6 24990233 24990471 -124526566 - L1MC1 LINE L1 -896 5250 4993 7 775 1124 75 7 0 chr6 24990471 24990617 -124526420 - B1_Mus1 SINE Alu -1 147 1 7 775 449 278 118 91 chr6 24990617 24990750 -124526287 - L1MC1 LINE L1 -1154 4992 4869 7 775 5215 68 6 7 chr6 24991744 24992437 -124524600 - L1Md_F2 LINE L1 -12 6570 5879 7 775 572 184 0 17 chr6 24992985 24993101 -124523936 + Lx4A LINE L1 6894 7007 -51 7 775 740 276 81 4 chr6 24993104 24993351 -124523686 + Lx7 LINE L1 7038 7303 -393 7 775 289 405 0 0 chr6 24994639 24994723 -124522314 - PB1D10 SINE Alu -32 85 2 7 775 950 196 4 144 chr6 24995913 24996054 -124520983 + B3 SINE B2 1 113 -103 7 775 1050 109 0 7 chr6 24996054 24996202 -124520835 - B1_Mm SINE Alu 0 147 1 7 775 950 196 4 144 chr6 24996202 24996310 -124520727 + B3 SINE B2 114 215 -1 7 775 23 33 0 0 chr6 24997321 24997351 -124519686 + AT_rich Low_complexity Low_complexity 1 30 0 7 775 1205 275 16 53 chr6 24997530 24997852 -124519185 + MTE2b LTR MaLR 3 312 -67 7 775 429 357 67 15 chr6 24997850 24998120 -124518917 + MLT1B LTR MaLR 96 379 -11 7 775 564 263 45 32 chr6 24998625 24998782 -124518255 - MLT1B LTR MaLR -17 373 215 7 775 215 161 18 0 chr6 24998819 24998875 -124518162 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 7 775 787 264 65 20 chr6 24999079 24999280 -124517757 - B3 SINE B2 -5 211 2 7 775 352 237 121 17 chr6 24999375 24999491 -124517546 - MLT1B LTR MaLR -251 139 12 7 775 287 352 32 8 chr6 25000197 25000323 -124516714 + MIR SINE MIR 21 149 -113 1 775 1795 57 0 0 chr6 25000397 25000624 -124516413 + L1Md_T LINE L1 6356 6582 0 2 775 259 192 38 13 chr6 25001444 25001523 -124515514 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 775 462 143 0 0 chr6 25002013 25002090 -124514947 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 775 959 301 94 27 chr6 25002159 25002559 -124514478 - MLT2B2 LTR ERVL -35 532 43 5 775 6797 118 23 47 chr6 25006806 25007949 -124509088 + Lx3A LINE L1 5865 6979 -2 6 775 225 94 0 0 chr6 25007949 25007981 -124509056 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7 775 22 56 0 0 chr6 25008204 25008240 -124508797 + AT_rich Low_complexity Low_complexity 1 36 0 8 775 294 374 71 60 chr6 25008322 25008604 -124508433 - MER21B LTR ERV1 -149 714 430 9 775 1392 195 186 12 chr6 25008625 25008771 -124508266 - ORR1C2 LTR MaLR 0 384 231 1 775 369 0 0 0 chr6 25008771 25008812 -124508225 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 775 447 19 0 0 chr6 25008812 25008863 -124508174 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 775 1392 195 186 12 chr6 25008863 25009042 -124507995 - ORR1C2 LTR MaLR -154 230 2 1 775 1372 209 17 17 chr6 25009046 25009348 -124507689 - ORR1C2-int LTR MaLR -4 1505 1204 1 775 2167 278 61 35 chr6 25011866 25012633 -124504404 + Lx8 LINE L1 6196 6982 -491 1 775 1083 301 106 61 chr6 25012643 25013356 -124503681 + RMER13A LTR ERVK 2 770 -138 1 775 524 331 15 23 chr6 25013460 25013720 -124503317 + Lx9 LINE L1 7209 7466 -178 1 775 700 321 106 19 chr6 25014176 25014503 -124502534 - MLT1A0 LTR MaLR -16 358 3 1 775 523 270 47 1 chr6 25014923 25015087 -124501950 + MLT1A LTR MaLR 221 391 -17 1 775 495 227 0 0 chr6 25015365 25015453 -124501584 + Lx9 LINE L1 7144 7231 -413 1 775 483 149 11 0 chr6 25015465 25015552 -124501485 - Lx9 LINE L1 -183 7461 7374 1 775 335 242 31 21 chr6 25015718 25015815 -124501222 - Lx9 LINE L1 -494 7150 7053 1 775 1957 142 55 35 chr6 25015815 25016216 -124500821 - RLTR9E LTR ERVK 0 409 1 2 775 816 156 95 12 chr6 25016222 25016391 -124500646 + Lx9 LINE L1 6749 6931 -713 2 775 373 234 176 6 chr6 25016651 25016827 -124500210 + Arthur1 DNA Tip100 3431 3636 -311 2 775 558 23 11 44 chr6 25016851 25016941 -124500096 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 2 775 596 286 14 0 chr6 25017252 25017392 -124499645 + B4A SINE B4 133 274 -18 2 775 294 288 124 25 chr6 25017333 25017454 -124499583 + RMER12 LTR ERVK 698 830 -492 2 775 549 211 0 0 chr6 25018027 25018150 -124498887 + (CATA)n Simple_repeat Simple_repeat 2 124 0 2 775 231 114 0 0 chr6 25018454 25018489 -124498548 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2 775 39045 11 0 6 chr6 25020501 25026917 -124490120 - L1Md_A LINE L1 0 6582 208 2 775 1882 242 130 128 chr6 25027117 25028401 -124488636 - RMER1B Other Other -4 1062 45 2 775 969 162 0 0 chr6 25029156 25029329 -124487708 + CT-rich Low_complexity Low_complexity 4 176 0 3 775 207 100 0 0 chr6 25029658 25029688 -124487349 + (A)n Simple_repeat Simple_repeat 1 30 0 3 775 2508 191 78 90 chr6 25030292 25031106 -124485931 - RMER19B LTR ERVK -6 605 1 3 775 257 227 33 22 chr6 25032930 25033013 -124484024 + (CATATA)n Simple_repeat Simple_repeat 5 88 0 3 775 426 85 0 0 chr6 25033013 25033072 -124483965 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 775 257 227 33 22 chr6 25033072 25033078 -124483959 + (CATATA)n Simple_repeat Simple_repeat 5 10 0 3 775 645 176 33 127 chr6 25033081 25033231 -124483806 - ORR1B2 LTR MaLR -226 148 13 3 775 360 0 0 0 chr6 25033234 25033274 -124483763 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 3 775 1092 67 0 0 chr6 25033274 25033409 -124483628 - B1_Mm SINE Alu -12 135 1 3 775 4077 245 69 29 chr6 25033440 25034495 -124482542 - ORR1B2-int LTR MaLR -1 1369 273 3 775 189 0 0 0 chr6 25034495 25034516 -124482521 + (A)n Simple_repeat Simple_repeat 1 21 0 3 775 1729 170 79 18 chr6 25034519 25034587 -124482450 - ORR1B2 LTR MaLR -3 364 296 3 96 2365 105 41 6 chr6 25034587 25034796 -124482241 - L1Md_F2 LINE L1 -12 6570 6349 4 776 228 35 0 0 chr6 25034796 25034825 -124482212 + (G)n Simple_repeat Simple_repeat 1 29 0 4 776 2365 105 41 6 chr6 25034825 25034979 -124482058 - L1Md_F2 LINE L1 -234 6348 6195 4 776 1729 170 79 18 chr6 25034979 25035251 -124481786 - ORR1B2 LTR MaLR -72 295 3 3 776 904 169 121 22 chr6 25035251 25035432 -124481605 - ORR1B2-int LTR MaLR -1096 274 76 3 776 2281 158 18 50 chr6 25035437 25035876 -124481161 + RLTR1D LTR ERV1 175 599 -6 4 776 282 276 0 0 chr6 25035877 25035935 -124481102 - ORR1B2-int LTR MaLR -1305 65 8 3 776 2574 113 77 3 chr6 25035935 25036326 -124480711 + RLTR9B2 LTR ERVK 1 420 0 4 776 1141 206 127 45 chr6 25036339 25036694 -124480343 - ORR1B2 LTR MaLR 0 384 1 3 776 198 0 0 0 chr6 25037600 25037622 -124479415 + (A)n Simple_repeat Simple_repeat 1 22 0 4 776 5085 134 9 8 chr6 25038796 25039658 -124477379 + Lx2 LINE L1 5786 6648 -349 4 776 1185 151 0 0 chr6 25039653 25039852 -124477185 + Lx2 LINE L1 6775 6973 -24 4 776 198 0 0 0 chr6 25039852 25039874 -124477163 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 776 286 261 114 0 chr6 25039902 25039990 -124477047 + LTR40b LTR ERVL 59 156 -363 4 776 1897 30 13 4 chr6 25040005 25040241 -124476796 + L1Md_F3 LINE L1 6344 6581 -3 4 776 319 247 123 26 chr6 25040324 25040478 -124476559 + LTR40b LTR ERVL 290 458 -4 4 776 1378 280 33 18 chr6 25041303 25041692 -124475345 - Lx5 LINE L1 -9 7041 6647 4 776 1293 101 26 0 chr6 25042226 25042415 -124474622 + B2_Mm2 SINE B2 1 194 -1 5 776 2020 110 9 51 chr6 25042940 25043276 -124473761 + RLTRETN_Mm LTR ERVK 1 322 0 5 776 22943 57 4 19 chr6 25043277 25046465 -124470572 + MMETn-int LTR ERVK 2 3141 -1703 5 776 8122 99 24 31 chr6 25046499 25047614 -124469423 + MMETn-int LTR ERVK 3486 4579 -265 5 776 5669 33 0 0 chr6 25047614 25048282 -124468755 + L1Md_A LINE L1 5914 6581 -1 5 776 8122 99 24 31 chr6 25048282 25048512 -124468525 + MMETn-int LTR ERVK 4580 4811 -33 5 776 252 0 0 0 chr6 25048512 25048540 -124468497 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 776 8122 99 24 31 chr6 25048540 25048562 -124468475 + MMETn-int LTR ERVK 4812 4843 -1 5 776 2027 103 9 51 chr6 25048562 25048898 -124468139 + RLTRETN_Mm LTR ERVK 1 322 0 5 776 490 128 21 0 chr6 25049340 25049434 -124467603 + (TA)n Simple_repeat Simple_repeat 2 97 0 5 776 1138 82 0 0 chr6 25051119 25051266 -124465771 + B1_Mus1 SINE Alu 2 148 0 5 776 918 109 0 0 chr6 25051267 25051404 -124465633 + (GA)n Simple_repeat Simple_repeat 2 138 0 5 776 452 222 31 0 chr6 25051542 25051704 -124465333 + Lx9 LINE L1 7450 7616 -28 5 776 833 236 55 23 chr6 25051876 25052164 -124464873 + ORR1E LTR MaLR 1 353 -6 5 776 7259 66 4 1 chr6 25052776 25054140 -124462897 + L1_Mus2 LINE L1 5197 6565 -1 5 776 862 285 88 17 chr6 25054525 25054878 -124462159 - MTE2b LTR MaLR 0 379 2 6 776 36221 31 0 0 chr6 25055126 25061797 -124455240 - L1Md_T LINE L1 0 6585 1 6 776 2308 278 101 32 chr6 25062647 25063690 -124453347 - Lx9 LINE L1 0 7644 6530 6 776 795 248 4 16 chr6 25063703 25063953 -124453084 + L1_Rod LINE L1 3660 3906 -1941 6 776 2269 148 32 0 chr6 25064406 25064784 -124452253 - Lx2 LINE L1 -2 6995 6606 6 776 260 351 27 0 chr6 25064809 25064883 -124452154 + ID4 SINE ID 8 83 0 6 776 2167 60 0 19 chr6 25064920 25065228 -124451809 - L1_Mm LINE L1 -3151 2732 2431 6 776 732 35 0 162 chr6 25065228 25065364 -124451673 + L1Md_F3 LINE L1 6456 6569 -15 6 776 21 71 0 0 chr6 25065742 25065784 -124451253 + AT_rich Low_complexity Low_complexity 1 42 0 6 776 838 184 67 0 chr6 25065865 25066044 -124450993 - B2_Mm2 SINE B2 -3 192 2 6 776 361 223 80 60 chr6 25066149 25066249 -124450788 + PB1 SINE Alu 18 119 -8 7 776 243 317 161 8 chr6 25066249 25066273 -124450764 + B4A SINE B4 103 245 -47 7 776 408 88 0 0 chr6 25066284 25066341 -124450696 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 7 776 2450 270 92 17 chr6 25067668 25068747 -124448290 + Lx6 LINE L1 6065 7460 0 7 776 520 204 28 0 chr6 25069474 25069582 -124447455 - RMER1A Other Other -18 1012 902 7 776 567 144 0 0 chr6 25069585 25069682 -124447355 + (CA)n Simple_repeat Simple_repeat 1 97 0 7 776 623 250 31 18 chr6 25069951 25070114 -124446923 + MTD LTR MaLR 3 167 -252 7 776 361 275 12 0 chr6 25070107 25070187 -124446850 + B4A SINE B4 193 273 -19 7 776 459 0 0 0 chr6 25070197 25070248 -124446789 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 776 351 0 0 0 chr6 25070248 25070286 -124446751 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 776 195 129 0 0 chr6 25070286 25070317 -124446720 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 8 776 41 66 0 0 chr6 25071354 25071430 -124445607 + AT_rich Low_complexity Low_complexity 1 76 0 8 776 678 302 65 39 chr6 25072639 25073021 -124444016 + Lx8 LINE L1 7079 7470 -3 8 776 519 235 98 0 chr6 25073378 25073531 -124443506 - Lx6 LINE L1 -16 7444 7277 8 776 801 233 38 38 chr6 25073565 25073775 -124443262 + B3 SINE B2 2 211 -5 8 776 590 322 61 27 chr6 25074233 25074362 -124442675 + RMER5 LTR ERV1 1 130 -404 8 776 2944 55 39 18 chr6 25074362 25074750 -124442287 - MTA_Mm LTR MaLR 0 396 1 8 776 590 322 61 27 chr6 25074750 25074882 -124442155 + RMER5 LTR ERV1 131 271 -263 8 776 22 0 0 0 chr6 25075391 25075413 -124441624 + AT_rich Low_complexity Low_complexity 1 22 0 8 776 189 341 193 22 chr6 25076211 25076439 -124440598 - L4 LINE RTE -1624 405 139 8 776 1109 92 0 0 chr6 25076651 25076793 -124440244 + B1_Mus1 SINE Alu 1 142 -6 8 776 297 51 0 0 chr6 25076794 25076833 -124440204 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 9 776 211 161 18 18 chr6 25077052 25077109 -124439928 + (TAA)n Simple_repeat Simple_repeat 1 57 0 9 776 249 321 37 0 chr6 25077600 25077681 -124439356 + MLT1G LTR MaLR 320 403 -188 9 776 8118 28 0 0 chr6 25077948 25079521 -124437516 - L1Md_T LINE L1 0 6582 5010 9 776 282 300 90 0 chr6 25079697 25079797 -124437240 + PB1D10 SINE Alu 2 110 -7 9 776 1130 76 0 6 chr6 25080006 25080165 -124436872 - L1Md_F2 LINE L1 -12 6570 6413 9 776 582 54 0 0 chr6 25080610 25080684 -124436353 + (CA)n Simple_repeat Simple_repeat 2 75 0 9 776 218 367 50 20 chr6 25081359 25081459 -124435578 - B1F2 SINE Alu -24 125 23 9 776 747 281 26 15 chr6 25081372 25081567 -124435470 - B4A SINE B4 -94 198 2 9 776 256 223 19 0 chr6 25083053 25083156 -124433881 + CT-rich Low_complexity Low_complexity 1 105 0 9 776 22 0 0 0 chr6 25083163 25083185 -124433852 + AT_rich Low_complexity Low_complexity 1 22 0 1 776 227 103 0 25 chr6 25084564 25084604 -124432433 + (TTC)n Simple_repeat Simple_repeat 3 41 0 1 776 370 312 11 0 chr6 25084656 25084749 -124432288 - PB1D7 SINE Alu -25 95 2 1 776 273 258 21 82 chr6 25084662 25084759 -124432278 - ID_B1 SINE B4 -58 166 76 1 776 222 354 121 35 chr6 25086616 25086815 -124430222 + MIR SINE MIR 27 242 -20 1 776 658 311 58 25 chr6 25087300 25087781 -124429256 + L1MA5 LINE L1 5776 6265 -35 1 776 307 345 172 44 chr6 25088175 25088448 -124428589 + MLT1A0 LTR MaLR 31 338 -27 1 776 432 0 0 0 chr6 25088581 25088629 -124428408 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 776 519 17 0 0 chr6 25089291 25089351 -124427686 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 776 230 136 60 15 chr6 25090583 25090650 -124426387 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 776 417 39 0 0 chr6 25092216 25092267 -124424770 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 776 41 21 0 0 chr6 25092409 25092457 -124424580 + AT_rich Low_complexity Low_complexity 1 48 0 1 776 7675 75 11 2 chr6 25092617 25093760 -124423277 - MusHAL1 LINE L1 -296 2416 1263 1 776 363 68 237 0 chr6 25093800 25093859 -124423178 + RLTR27 LTR ERVK 1 73 -236 1 776 30461 53 2 17 chr6 25093859 25098726 -124418311 - L1Md_F LINE L1 -758 5125 336 1 776 4254 135 7 120 chr6 25098732 25098777 -124418260 - L1VL4 LINE L1 -5468 834 804 1 776 351 0 0 0 chr6 25098777 25098816 -124418221 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 776 4254 135 7 120 chr6 25098816 25099685 -124417352 - L1VL4 LINE L1 -5499 803 24 1 776 27 0 0 0 chr6 25099693 25099720 -124417317 + AT_rich Low_complexity Low_complexity 1 27 0 1 776 249 247 29 95 chr6 25099721 25099931 -124417106 - Lx9 LINE L1 -3 7641 7446 1 776 408 20 0 0 chr6 25100254 25100303 -124416734 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 776 456 135 0 0 chr6 25100369 25100443 -124416594 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 776 204 286 0 0 chr6 25100863 25100905 -124416132 + L2c LINE L2 3278 3319 -68 1 776 356 71 18 0 chr6 25101271 25101327 -124415710 + (TTA)n Simple_repeat Simple_repeat 2 58 0 1 776 4412 202 51 41 chr6 25102101 25103140 -124413897 - Lx5 LINE L1 -122 6928 5880 1 776 4604 9 0 0 chr6 25103132 25103676 -124413361 + L1Md_A LINE L1 5043 5586 -297 1 776 8913 11 0 0 chr6 25103676 25104672 -124412365 + L1Md_A LINE L1 5587 6582 0 1 776 1869 155 73 3 chr6 25104698 25105053 -124411984 - L1_Mur2 LINE L1 -4 5873 5494 1 776 302 180 0 0 chr6 25105056 25105117 -124411920 - L1_Mur2 LINE L1 -825 5052 4992 1 776 225 0 0 0 chr6 25105118 25105143 -124411894 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 776 8487 148 53 26 chr6 25105154 25106900 -124410137 - L1_Mur2 LINE L1 -986 4891 3098 1 776 11444 56 1 0 chr6 25106901 25109115 -124407922 - L1Md_F2 LINE L1 0 6582 4367 1 776 1599 5 0 0 chr6 25109169 25109370 -124407667 + (TTC)n Simple_repeat Simple_repeat 1 201 0 1 776 391 113 28 0 chr6 25109370 25109441 -124407596 + (TCC)n Simple_repeat Simple_repeat 3 75 0 1 776 6089 179 50 13 chr6 25109441 25110895 -124406142 - L1_Mur2 LINE L1 -2793 3084 1578 1 776 203 0 0 36 chr6 25110900 25110928 -124406109 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 776 305 176 15 0 chr6 25110933 25111001 -124406036 - L1_Mur2 LINE L1 -4421 1456 1388 1 776 1446 205 12 70 chr6 25111188 25111529 -124405508 + ORR1A4 LTR MaLR 1 321 -8 1 776 417 320 66 26 chr6 25111949 25112177 -124404860 + L1MC3 LINE L1 7287 7523 -262 1 776 233 329 39 127 chr6 25112462 25112793 -124404244 + ORR1E LTR MaLR 58 359 0 1 776 329 272 162 54 chr6 25113134 25113449 -124403588 - HAL1b LINE L1 -677 1332 984 1 776 216 0 0 0 chr6 25113557 25113581 -124403456 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 1 776 387 0 0 0 chr6 25113709 25113752 -124403285 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 776 252 0 0 0 chr6 25114494 25114522 -124402515 + (ATAGG)n Simple_repeat Simple_repeat 4 31 0 1 776 282 274 112 17 chr6 25114725 25114903 -124402134 + L1M4b LINE L1 1917 2111 -5223 1 776 307 275 107 39 chr6 25115273 25115610 -124401427 + L1M4b LINE L1 2994 3353 -3981 1 776 799 285 59 22 chr6 25115688 25115961 -124401076 + ORR1E LTR MaLR 6 288 -71 1 776 1248 116 11 114 chr6 25115952 25115995 -124401042 - RLTR31A_Mm LTR ERVK -349 235 196 1 776 810 0 0 0 chr6 25115995 25116085 -124400952 + (TTTC)n Simple_repeat Simple_repeat 2 91 0 1 776 1248 116 11 114 chr6 25116085 25116303 -124400734 - RLTR31A_Mm LTR ERVK -389 195 1 1 776 282 133 0 0 chr6 25116334 25116379 -124400658 + B3A SINE B2 7 51 -147 1 776 279 0 0 0 chr6 25116437 25116468 -124400569 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 776 585 0 0 0 chr6 25116468 25116532 -124400505 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 776 27 62 0 0 chr6 25116546 25116594 -124400443 + AT_rich Low_complexity Low_complexity 1 48 0 1 776 267 140 20 0 chr6 25117203 25117253 -124399784 + Lx2A LINE L1 6915 6965 -43 1 776 380 186 0 11 chr6 25117255 25117342 -124399695 + Lx2A LINE L1 6923 7008 0 1 776 288 355 66 8 chr6 25117578 25117700 -124399337 + RSINE1 SINE B4 11 139 -26 1 776 421 309 0 0 chr6 25117747 25117857 -124399180 + PB1D7 SINE Alu 2 111 -9 1 776 843 122 0 0 chr6 25117858 25117989 -124399048 + (GAAA)n Simple_repeat Simple_repeat 1 131 0 1 776 477 0 0 0 chr6 25118028 25118081 -124398956 + (TAA)n Simple_repeat Simple_repeat 2 54 0 1 776 428 398 12 31 chr6 25118136 25118297 -124398740 + B3A SINE B2 17 174 -24 1 776 486 0 0 0 chr6 25118602 25118656 -124398381 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 776 370 266 21 0 chr6 25118686 25118780 -124398257 + ID_B1 SINE B4 129 224 0 1 776 1131 294 41 39 chr6 25119540 25119929 -124397108 + Lx6 LINE L1 7045 7434 -26 1 776 1199 142 9 16 chr6 25119967 25120176 -124396861 + B2_Mm2 SINE B2 1 205 -11 1 776 182 254 63 63 chr6 25120607 25120670 -124396367 + L2 LINE L2 1842 1904 -1515 1 776 389 271 126 23 chr6 25120728 25120902 -124396135 - B3 SINE B2 0 216 25 1 776 756 274 30 20 chr6 25120906 25121107 -124395930 - B3 SINE B2 -13 203 1 1 776 6587 154 18 9 chr6 25121197 25122591 -124394446 - Lx2 LINE L1 -862 6135 4723 1 776 5008 153 11 1 chr6 25123191 25124049 -124392988 - Lx2 LINE L1 -1153 4724 3859 1 776 21974 100 19 9 chr6 25124160 25128215 -124388822 + L1Md_F2 LINE L1 244 4334 -1549 1 776 2543 80 0 3 chr6 25128206 25128545 -124388492 + L1Md_F2 LINE L1 5249 5586 -297 1 776 7150 85 11 4 chr6 25128545 25129534 -124387503 + L1Md_F2 LINE L1 5587 6582 0 1 776 22 35 0 0 chr6 25129937 25129966 -124387071 + AT_rich Low_complexity Low_complexity 1 29 0 1 776 419 294 92 24 chr6 25130921 25131127 -124385910 + Lx8 LINE L1 7239 7458 -15 1 776 25 0 0 0 chr6 25131129 25131154 -124385883 + AT_rich Low_complexity Low_complexity 1 25 0 1 776 210 37 0 0 chr6 25131496 25131523 -124385514 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 776 423 0 0 0 chr6 25131865 25131912 -124385125 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 776 755 187 35 65 chr6 25132004 25132233 -124384804 - Lx9 LINE L1 -5 7639 7418 1 776 1687 150 137 11 chr6 25134491 25135034 -124382003 - RLTR17 LTR ERVK 0 692 49 1 776 698 269 145 3 chr6 25135616 25135933 -124381104 + L1MB3 LINE L1 5813 6174 -9 1 776 22 0 0 0 chr6 25137109 25137131 -124379906 + AT_rich Low_complexity Low_complexity 1 22 0 1 776 30 27 0 0 chr6 25137727 25137764 -124379273 + AT_rich Low_complexity Low_complexity 1 37 0 1 776 2272 69 3 59 chr6 25138675 25139013 -124378024 - ORR1A2 LTR MaLR -8 319 1 1 776 22 35 0 0 chr6 25139215 25139244 -124377793 + AT_rich Low_complexity Low_complexity 1 29 0 1 776 565 298 19 48 chr6 25139787 25139995 -124377042 - B3 SINE B2 0 216 15 1 776 387 314 75 12 chr6 25140279 25140440 -124376597 - MER58B DNA MER1_type -153 188 18 1 776 420 20 0 0 chr6 25140621 25140670 -124376367 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 776 24 0 0 0 chr6 25141148 25141172 -124375865 + AT_rich Low_complexity Low_complexity 1 24 0 1 776 378 0 0 0 chr6 25141363 25141405 -124375632 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 776 407 277 161 27 chr6 25141457 25141931 -124375106 - L1MA5A LINE L1 -416 5881 5313 1 776 310 253 67 33 chr6 25142113 25142203 -124374834 - PB1D9 SINE Alu -15 105 13 1 776 216 184 0 0 chr6 25142440 25142489 -124374548 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1 776 482 302 70 0 chr6 25143119 25143248 -124373789 - B4A SINE B4 -12 280 143 1 776 218 289 24 24 chr6 25143348 25143433 -124373604 - B4 SINE B4 -206 86 2 1 776 326 372 69 58 chr6 25143440 25143714 -124373323 - MLT2F LTR ERVL -102 561 285 1 776 270 271 34 34 chr6 25143826 25143914 -124373123 - LTR33C LTR ERVL -495 134 47 1 776 3921 103 129 38 chr6 25144319 25144696 -124372341 - RMER17A LTR ERVK 0 751 341 1 776 480 35 0 0 chr6 25144696 25144754 -124372283 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 776 3921 103 129 38 chr6 25144754 25145064 -124371973 - RMER17A LTR ERVK -411 340 2 1 776 216 0 0 0 chr6 25145675 25145699 -124371338 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1 776 596 50 12 0 chr6 25147384 25147464 -124369573 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 1 776 416 335 67 46 chr6 25147588 25147873 -124369164 - MLT2B2 LTR ERVL -217 298 8 1 776 273 356 162 18 chr6 25147928 25148211 -124368826 - L4 LINE RTE -280 1749 1426 1 776 1990 265 67 16 chr6 25148317 25149041 -124367996 - RMER1B Other Other -5 1061 144 1 776 1078 266 102 42 chr6 25149092 25149476 -124367561 - RMER1B Other Other -616 450 44 1 776 429 20 0 0 chr6 25149863 25149913 -124367124 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 776 180 0 0 0 chr6 25149913 25149933 -124367104 + (T)n Simple_repeat Simple_repeat 1 20 0 1 776 2648 78 38 20 chr6 25151992 25152202 -124364835 - MTB LTR MaLR 0 400 180 1 776 3915 45 0 22 chr6 25152202 25152704 -124364333 - L1Md_F2 LINE L1 0 6582 6092 1 776 2648 78 38 20 chr6 25152704 25152886 -124364151 - MTB LTR MaLR -221 179 1 1 776 877 305 44 8 chr6 25152892 25153252 -124363785 + L1_Mur3 LINE L1 109 481 -7247 1 776 3548 257 41 11 chr6 25153254 25154327 -124362710 + L1_Mur3 LINE L1 301 1419 -4461 1 776 207 0 0 0 chr6 25154327 25154350 -124362687 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 776 3116 187 78 41 chr6 25154350 25154961 -124362076 + L1_Mur3 LINE L1 1420 2057 -3823 1 776 456 104 0 0 chr6 25154961 25155028 -124362009 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 776 3116 187 78 41 chr6 25155028 25155127 -124361910 + L1_Mur3 LINE L1 2058 2143 -3737 1 776 2582 281 31 32 chr6 25155108 25155662 -124361375 + RMER1C Other Other 414 961 -381 2 776 1955 138 24 65 chr6 25155662 25156002 -124361035 + ORR1A3 LTR MaLR 1 326 0 2 776 2582 281 31 32 chr6 25156002 25156218 -124360819 + RMER1C Other Other 962 1183 -159 2 776 465 181 0 0 chr6 25156218 25156312 -124360725 + (CA)n Simple_repeat Simple_repeat 1 94 0 2 776 3974 179 58 23 chr6 25156313 25157214 -124359823 + L1_Mur3 LINE L1 2152 3069 -2811 1 776 991 143 0 0 chr6 25157214 25157361 -124359676 + B1_Mus1 SINE Alu 2 148 0 2 776 3974 179 58 23 chr6 25157361 25157428 -124359609 + L1_Mur3 LINE L1 3070 3154 -2726 1 776 32832 86 9 8 chr6 25157535 25162509 -124354528 + L1Md_F2 LINE L1 652 5625 -258 2 776 6083 75 35 6 chr6 25162509 25163345 -124353692 + L1Md_F2 LINE L1 5711 6570 -12 2 776 247 175 18 0 chr6 25163374 25163431 -124353606 + L1_Mur3 LINE L1 3125 3182 -2698 2 776 2112 246 62 132 chr6 25163431 25164274 -124352763 + Lx6 LINE L1 6271 7054 -406 2 776 247 0 0 0 chr6 25164271 25164298 -124352739 - L1Md_F2 LINE L1 -139 6443 6417 2 776 955 63 9 12 chr6 25164286 25164437 -124352600 + L1Md_F2 LINE L1 6440 6577 -5 2 776 1357 309 41 5 chr6 25164430 25164824 -124352213 + Lx6 LINE L1 7041 7448 -12 2 1 1096 289 57 33 chr6 25165723 25166056 -124350981 + MTE2a LTR MaLR 18 358 -21 2 777 934 69 15 0 chr6 25166060 25166191 -124350846 + B1_Mm SINE Alu 15 147 0 2 777 205 211 0 0 chr6 25166191 25166229 -124350808 + A-rich Low_complexity Low_complexity 1 38 0 2 777 1121 303 20 54 chr6 25166481 25166790 -124350247 - Lx5 LINE L1 -8 7042 6746 2 777 3130 47 29 3 chr6 25166790 25167176 -124349861 + MTA_Mm LTR MaLR 1 396 0 2 777 1121 303 20 54 chr6 25167176 25167257 -124349780 - Lx5 LINE L1 -305 6745 6665 2 777 446 340 19 31 chr6 25167341 25167502 -124349535 + RSINE1 SINE B4 5 163 -2 2 777 207 270 27 0 chr6 25168213 25168287 -124348750 + (CATATA)n Simple_repeat Simple_repeat 6 81 0 2 777 235 330 188 0 chr6 25168995 25169079 -124347958 + B1_Mm SINE Alu 2 106 -41 2 777 2305 48 24 0 chr6 25169079 25169374 -124347663 + L1Md_F2 LINE L1 6281 6582 0 2 777 235 330 188 0 chr6 25169374 25169401 -124347636 + B1_Mm SINE Alu 107 133 -14 2 777 22 43 0 21 chr6 25169523 25169549 -124347488 + AT_rich Low_complexity Low_complexity 1 26 0 2 777 333 0 0 0 chr6 25169549 25169586 -124347451 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 777 22 43 0 21 chr6 25169586 25169606 -124347431 + AT_rich Low_complexity Low_complexity 1 20 0 2 777 606 288 22 61 chr6 25169610 25169839 -124347198 + Lx9 LINE L1 7216 7435 -209 2 777 3356 190 35 28 chr6 25169860 25170575 -124346462 - RMER6D LTR ERVK 0 720 1 2 777 243 189 0 0 chr6 25170613 25170666 -124346371 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2 777 551 320 65 0 chr6 25170674 25170827 -124346210 - B3A SINE B2 -35 163 1 2 777 35902 39 1 8 chr6 25170929 25176118 -124340919 + L1Md_T LINE L1 440 5586 -297 2 777 8218 36 6 3 chr6 25176119 25177110 -124339927 + L1Md_T LINE L1 5588 6581 -1 2 777 3042 40 53 3 chr6 25177213 25177590 -124339447 + MTA_Mm LTR MaLR 1 396 0 2 777 341 291 26 52 chr6 25177827 25177943 -124339094 + PB1D7 SINE Alu 7 119 -1 2 777 266 0 29 0 chr6 25178895 25178929 -124338108 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 777 222 62 0 0 chr6 25178929 25178961 -124338076 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 777 247 293 117 23 chr6 25179261 25179399 -124337638 + B1F SINE Alu 1 149 0 2 777 279 93 104 0 chr6 25179645 25179693 -124337344 - ORR1B1 LTR MaLR -8 386 324 2 777 21 36 0 0 chr6 25180108 25180136 -124336901 + AT_rich Low_complexity Low_complexity 1 28 0 2 777 30 27 0 0 chr6 25180228 25180265 -124336772 + AT_rich Low_complexity Low_complexity 1 37 0 2 777 1781 182 14 14 chr6 25180269 25180614 -124336423 - ORR1B1 LTR MaLR -47 347 3 2 777 21 0 0 0 chr6 25181451 25181472 -124335565 + AT_rich Low_complexity Low_complexity 1 21 0 2 777 375 98 0 0 chr6 25181922 25181983 -124335054 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 777 229 307 99 7 chr6 25182204 25182345 -124334692 + Charlie23a DNA MER1_type 167 320 -19 2 777 322 292 59 50 chr6 25182546 25182665 -124334372 + Charlie1a DNA MER1_type 1 120 -1335 2 777 444 37 0 0 chr6 25182781 25182835 -124334202 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 777 29 28 0 0 chr6 25183322 25183358 -124333679 + AT_rich Low_complexity Low_complexity 1 36 0 2 777 3233 135 6 0 chr6 25183473 25183968 -124333069 + Lx3A LINE L1 6384 6881 -100 2 777 1567 100 3 94 chr6 25184177 25184265 -124332772 - L1_Mm LINE L1 -865 5018 4939 2 777 2117 93 9 28 chr6 25184265 25184586 -124332451 + L1_Mus3 LINE L1 6317 6631 -7 2 777 1567 100 3 94 chr6 25184586 25184783 -124332254 - L1_Mm LINE L1 -945 4938 4759 2 777 7238 77 24 6 chr6 25184785 25186062 -124330975 + L1_Mus2 LINE L1 5266 6566 0 2 777 551 265 47 36 chr6 25187760 25188034 -124329003 - L1MA8 LINE L1 -19 6272 5996 2 777 462 262 73 48 chr6 25188058 25188330 -124328707 - L1MA6 LINE L1 -1 6299 6021 2 777 40 67 0 0 chr6 25188372 25188447 -124328590 + AT_rich Low_complexity Low_complexity 1 75 0 2 777 2628 321 33 11 chr6 25188548 25189484 -124327553 - Lx8 LINE L1 -123 7350 6394 2 777 564 294 24 52 chr6 25189697 25189988 -124327049 - L1_Mur3 LINE L1 -446 5434 5152 2 777 213 232 40 10 chr6 25190170 25190270 -124326767 + (TA)n Simple_repeat Simple_repeat 2 104 0 2 777 1592 304 91 11 chr6 25190273 25190888 -124326149 - Lx8 LINE L1 -149 7324 6661 2 777 323 307 36 29 chr6 25190929 25191102 -124325935 - L1M2 LINE L1 -1043 5100 4867 2 777 634 297 50 14 chr6 25191088 25191310 -124325727 + Lx7 LINE L1 7186 7415 -281 2 777 3436 132 22 5 chr6 25191472 25192026 -124325011 + Lx LINE L1 6092 6654 0 2 777 499 101 68 76 chr6 25192096 25192214 -124324823 - L1_Mus4 LINE L1 -7 6629 6513 2 777 18131 144 9 23 chr6 25192222 25195392 -124321645 - L1_Mm LINE L1 -73 5810 2686 2 777 415 296 133 23 chr6 25195382 25195638 -124321399 - L1_Mur3 LINE L1 -1559 4321 4038 2 777 690 249 105 12 chr6 25195657 25195905 -124321132 + L1_Mur3 LINE L1 3648 3918 -1962 2 777 21 36 0 0 chr6 25196655 25196683 -124320354 + AT_rich Low_complexity Low_complexity 1 28 0 2 777 324 70 0 0 chr6 25196704 25196747 -124320290 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 777 607 187 63 21 chr6 25196982 25197124 -124319913 - ORR1C2 LTR MaLR -63 321 174 2 777 1022 150 20 77 chr6 25197146 25197422 -124319615 - ORR1C2 LTR MaLR -118 260 1 2 777 378 286 34 0 chr6 25197809 25197956 -124319081 + Lx9 LINE L1 7430 7581 -63 2 777 2364 247 37 39 chr6 25197964 25198810 -124318227 - L1_Rod LINE L1 -1380 4500 3644 2 777 477 0 0 0 chr6 25198810 25198863 -124318174 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 777 1585 291 50 50 chr6 25198863 25199927 -124317110 - L1_Rod LINE L1 -2237 3643 2700 2 777 22 0 0 0 chr6 25199931 25199953 -124317084 + AT_rich Low_complexity Low_complexity 1 22 0 2 777 4486 98 2 2 chr6 25200022 25200644 -124316393 - L1_Mus1 LINE L1 0 5883 5262 2 777 5493 65 0 0 chr6 25200645 25201333 -124315704 + L1_Mus1 LINE L1 5880 6567 0 2 777 17216 36 1 2 chr6 25201471 25204247 -124312790 - L1Md_F2 LINE L1 -13 6569 3795 2 777 9480 41 2 1 chr6 25204246 25205435 -124311602 + L1Md_F2 LINE L1 2574 3764 -2119 2 777 248 329 0 27 chr6 25206402 25206477 -124310560 - PB1D10 SINE Alu 0 117 45 2 777 1344 174 79 8 chr6 25206827 25207093 -124309944 + L1_Mur1 LINE L1 5449 5733 -153 2 777 828 284 80 4 chr6 25207076 25207352 -124309685 + Lx3C LINE L1 6651 6947 -29 2 777 261 57 0 0 chr6 25207367 25207402 -124309635 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 2 777 229 317 125 0 chr6 25208244 25208348 -124308689 + PB1D7 SINE Alu 2 118 -2 2 777 514 270 9 9 chr6 25208357 25208469 -124308568 + B3A SINE B2 5 116 -82 2 777 252 351 0 0 chr6 25208523 25208600 -124308437 + ID4 SINE ID 3 79 -4 2 777 2026 132 71 3 chr6 25209005 25209355 -124307682 - Lx2 LINE L1 -1 6996 6623 2 777 339 304 163 70 chr6 25209611 25210336 -124306701 - L1M5 LINE L1 -3029 3117 2326 2 777 288 154 0 0 chr6 25210338 25210390 -124306647 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 777 277 349 150 43 chr6 25210491 25210698 -124306339 + L2a LINE L2 2749 2977 -442 2 777 272 306 56 0 chr6 25210958 25211066 -124305971 + L2a LINE L2 3313 3426 0 2 777 207 308 89 49 chr6 25211445 25211568 -124305469 - MIR SINE MIR -10 252 125 2 777 195 42 0 0 chr6 25212246 25212270 -124304767 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 777 679 290 153 12 chr6 25212384 25212639 -124304398 - B4A SINE B4 0 292 2 2 777 536 0 16 0 chr6 25212641 25212705 -124304332 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 2 777 647 325 69 61 chr6 25213191 25213552 -124303485 - MLT1A LTR MaLR -10 364 1 2 777 31 76 0 0 chr6 25213765 25213831 -124303206 + AT_rich Low_complexity Low_complexity 1 66 0 2 777 444 344 96 43 chr6 25213954 25214000 -124303037 - MLT1A0 LTR MaLR -20 345 306 2 777 1136 203 84 43 chr6 25214000 25214345 -124302692 + RLTR10D LTR ERVK 1 359 0 2 777 444 344 96 43 chr6 25214345 25214599 -124302438 - MLT1A0 LTR MaLR -60 305 29 2 777 229 314 136 32 chr6 25214611 25214736 -124302301 - B1F2 SINE Alu -1 148 11 2 777 769 252 63 24 chr6 25214922 25215129 -124301908 + B3 SINE B2 1 215 -1 2 777 1043 104 36 6 chr6 25215225 25215390 -124301647 - RLTR9F LTR ERVK -4 411 242 2 777 2131 124 41 0 chr6 25215390 25215728 -124301309 + L1_Mus4 LINE L1 6280 6631 -5 2 777 591 208 21 73 chr6 25215728 25215760 -124301277 - RLTR9F LTR ERVK -156 281 253 2 777 493 324 71 26 chr6 25216618 25216957 -124300080 + L1MC4 LINE L1 6665 7018 -1024 2 777 414 57 0 0 chr6 25218002 25218055 -124298982 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 777 619 153 45 71 chr6 25218205 25218360 -124298677 + URR1B DNA MER1_type 75 225 0 2 777 459 0 0 0 chr6 25218634 25218685 -124298352 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 777 496 121 0 11 chr6 25219547 25219639 -124297398 - Lx9 LINE L1 -8 7636 7546 2 777 1091 244 25 15 chr6 25219639 25219913 -124297124 + Lx9 LINE L1 6879 7155 -489 2 777 5949 82 21 0 chr6 25220291 25221106 -124295931 - L1_Mus3 LINE L1 -1 6637 5806 2 777 6891 122 8 3 chr6 25221106 25222152 -124294885 + L1_Mus3 LINE L1 4745 5797 -86 2 777 1198 28 14 0 chr6 25222152 25222297 -124294740 + B1_Mm SINE Alu 1 147 0 2 777 365 0 22 0 chr6 25222297 25222342 -124294695 + (CAAAAA)n Simple_repeat Simple_repeat 6 51 0 2 777 477 0 0 0 chr6 25222451 25222504 -124294533 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 777 210 118 0 0 chr6 25222504 25222538 -124294499 + (GGA)n Simple_repeat Simple_repeat 2 35 0 3 777 219 328 114 8 chr6 25223259 25223391 -124293646 + L2 LINE L2 2333 2478 -941 3 777 235 232 18 0 chr6 25223955 25224011 -124293026 + Lx3C LINE L1 6744 6800 -176 3 777 233 188 375 0 chr6 25224379 25224443 -124292594 + 4.5SRNA scRNA scRNA 5 92 -2 3 777 637 290 158 12 chr6 25224443 25224771 -124292266 + Lx2B LINE L1 6625 7000 0 3 777 325 312 181 12 chr6 25225926 25226185 -124290852 - MER20B DNA MER1_type -232 551 249 3 777 1193 283 20 20 chr6 25227733 25228173 -124288864 + Lx8 LINE L1 5483 5925 -1548 3 777 566 290 71 39 chr6 25229037 25229269 -124287768 - B3 SINE B2 0 216 1 3 777 23 0 0 0 chr6 25229310 25229333 -124287704 + AT_rich Low_complexity Low_complexity 1 23 0 3 777 356 298 19 6 chr6 25230089 25230251 -124286786 + L1MA6 LINE L1 6119 6282 -18 3 777 186 171 0 0 chr6 25230714 25230755 -124286282 + (CATCT)n Simple_repeat Simple_repeat 3 43 0 3 777 3069 237 36 7 chr6 25232376 25233061 -124283976 + Lx9 LINE L1 6683 7387 -257 3 777 887 219 32 0 chr6 25233422 25233641 -124283396 + Lx9 LINE L1 7389 7614 -30 3 777 651 168 9 0 chr6 25233643 25233756 -124283281 + B1_Mur4 SINE Alu 37 150 0 3 777 261 225 171 24 chr6 25233756 25233838 -124283199 - Lx2B LINE L1 -371 6629 6536 3 777 492 189 26 47 chr6 25233837 25234003 -124283034 + Lx2 LINE L1 6833 6996 -1 3 777 606 258 8 0 chr6 25234096 25234224 -124282813 + B1_Mur1 SINE Alu 21 149 0 3 777 243 0 0 0 chr6 25235227 25235254 -124281783 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 777 21 36 0 0 chr6 25235755 25235783 -124281254 + AT_rich Low_complexity Low_complexity 1 28 0 3 777 315 0 0 0 chr6 25236170 25236205 -124280832 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 777 438 311 6 18 chr6 25236436 25236603 -124280434 - L1MD LINE L1 -668 5691 5527 3 777 216 0 0 0 chr6 25236762 25236786 -124280251 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 777 681 142 0 0 chr6 25237475 25237581 -124279456 - L1_Mus4 LINE L1 -456 6180 6075 3 777 447 273 47 40 chr6 25237642 25237791 -124279246 + RLTR23 LTR ERV1 8 157 -273 3 777 498 355 84 32 chr6 25237838 25238149 -124278888 + RLTR23 LTR ERV1 104 430 0 3 777 181 157 38 38 chr6 25240047 25240100 -124276937 + (TATG)n Simple_repeat Simple_repeat 2 54 0 3 777 356 336 121 95 chr6 25240157 25240430 -124276607 - B4A SINE B4 -12 280 1 3 777 216 0 0 0 chr6 25240819 25240843 -124276194 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 777 5774 159 19 63 chr6 25241118 25243260 -124273777 + L1_Mus1 LINE L1 220 2118 -3765 3 777 7716 62 5 7 chr6 25243253 25244526 -124272511 - L1Md_F2 LINE L1 0 6582 5342 3 777 23351 115 33 10 chr6 25244526 25245841 -124271196 + L1_Mus1 LINE L1 2120 3476 -2407 3 777 189 0 0 0 chr6 25245841 25245862 -124271175 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 777 23351 101 24 7 chr6 25245862 25248909 -124268128 + L1_Mus1 LINE L1 3477 6567 0 3 777 269 352 74 53 chr6 25252191 25252380 -124264657 + ORR1E LTR MaLR 6 198 -161 3 777 437 120 0 0 chr6 25253788 25253853 -124263184 - Lx2A1 LINE L1 -170 6806 6733 3 777 692 175 8 16 chr6 25253853 25253981 -124263056 + B1_Mus2 SINE Alu 20 146 -1 3 777 182 239 0 14 chr6 25255549 25255621 -124261416 + CT-rich Low_complexity Low_complexity 1 71 0 3 777 28 71 0 0 chr6 25256473 25256529 -124260508 + AT_rich Low_complexity Low_complexity 1 56 0 3 777 3024 89 0 2 chr6 25256802 25257217 -124259820 + L1_Mus2 LINE L1 6152 6565 -1 3 777 668 54 0 21 chr6 25257248 25257342 -124259695 + (GAAAA)n Simple_repeat Simple_repeat 3 94 0 3 777 812 295 39 64 chr6 25257600 25258060 -124258977 + RLTR11B LTR ERVK 1 462 -65 3 777 519 290 63 32 chr6 25258361 25258582 -124258455 + ORR1E LTR MaLR 3 230 -129 3 777 22 0 0 0 chr6 25258742 25258764 -124258273 + AT_rich Low_complexity Low_complexity 1 22 0 3 777 372 317 152 5 chr6 25259067 25259251 -124257786 - MLT1J2 LTR MaLR -12 436 226 3 777 285 75 0 0 chr6 25260028 25260068 -124256969 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 777 1589 278 39 2 chr6 25260575 25260986 -124256051 - MT2A LTR ERVL -107 426 1 3 777 989 82 0 19 chr6 25261280 25261441 -124255596 + L1Md_F2 LINE L1 6425 6582 0 3 777 1797 166 10 25 chr6 25261808 25262193 -124254844 - ORR1A3 LTR MaLR 0 394 1 3 777 2351 171 12 37 chr6 25263529 25263892 -124253145 + MTC LTR MaLR 1 366 -55 3 777 2940 35 0 0 chr6 25263892 25264238 -124252799 + ORR1A0 LTR MaLR 1 346 0 3 777 2351 171 12 37 chr6 25264238 25264306 -124252731 + MTC LTR MaLR 367 421 0 3 777 21 0 0 0 chr6 25264358 25264379 -124252658 + AT_rich Low_complexity Low_complexity 1 21 0 3 777 760 309 62 34 chr6 25264930 25265252 -124251785 + MLT1A0 LTR MaLR 32 362 -3 3 777 282 233 0 0 chr6 25266150 25266236 -124250801 + (TG)n Simple_repeat Simple_repeat 2 87 0 3 777 192 359 13 13 chr6 25266286 25266365 -124250672 + MIR SINE MIR 17 95 -167 3 777 270 174 83 42 chr6 25266516 25266532 -124250505 - MT2B2 LTR ERVL -351 233 185 3 777 361 100 0 0 chr6 25266532 25266582 -124250455 - B1_Mus2 SINE Alu -97 50 1 3 777 181 75 50 0 chr6 25266605 25266645 -124250392 + (CAA)n Simple_repeat Simple_repeat 2 43 0 3 777 330 269 92 18 chr6 25268293 25268456 -124248581 - L1MC3 LINE L1 -396 7389 7215 3 777 277 284 51 29 chr6 25268554 25268692 -124248345 - L1MC3 LINE L1 -741 7044 6904 3 777 728 272 57 33 chr6 25268681 25269015 -124248022 + L1MC3 LINE L1 7432 7773 -12 3 777 204 330 98 57 chr6 25269355 25269548 -124247489 - L3 LINE CR1 -426 4063 3863 3 777 402 320 103 16 chr6 25270853 25271037 -124246000 + B4A SINE B4 2 201 -91 3 777 350 173 80 0 chr6 25271365 25271440 -124245597 + Lx9 LINE L1 7367 7447 -197 3 777 2783 174 127 20 chr6 25271444 25271996 -124245041 + RMER19C LTR ERVK 1 611 0 3 777 1113 240 19 4 chr6 25271998 25272257 -124244780 + MYSERV-int LTR ERVK 6039 6301 -249 3 777 587 198 0 0 chr6 25272607 25272733 -124244304 + L1_Mur3 LINE L1 4152 4277 -1603 3 777 3073 56 13 8 chr6 25273223 25273617 -124243420 + MTA_Mm LTR MaLR 1 396 0 3 777 489 222 0 0 chr6 25274112 25274202 -124242835 + MTEa LTR MaLR 8 97 -282 3 777 253 226 128 82 chr6 25274269 25274421 -124242616 + MTEa LTR MaLR 221 379 0 3 777 1033 221 30 65 chr6 25275922 25276261 -124240776 - L1_Mur3 LINE L1 -2640 3240 2914 3 777 1187 188 114 0 chr6 25276268 25276576 -124240461 + L1_Mur3 LINE L1 3225 3567 -2313 3 777 232 284 0 0 chr6 25276576 25276650 -124240387 + (AACTG)n Simple_repeat Simple_repeat 4 77 0 3 777 2089 138 64 17 chr6 25276650 25277055 -124239982 - RMER6C LTR ERVK -266 424 1 3 777 1275 199 4 4 chr6 25277056 25277308 -124239729 + L1_Mur3 LINE L1 3723 3974 -1906 3 777 817 201 24 6 chr6 25277290 25277455 -124239582 + L1_Mur3 LINE L1 4104 4271 -1609 3 777 3009 193 68 96 chr6 25277458 25277756 -124239281 + RMER19B LTR ERVK 2 244 -658 3 777 196 53 53 0 chr6 25277756 25277794 -124239243 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 777 3009 193 68 96 chr6 25277794 25278279 -124238758 + RMER19B LTR ERVK 245 762 -140 3 777 340 123 0 34 chr6 25278279 25278338 -124238699 + L1_Mur3 LINE L1 4428 4484 -1396 3 777 3295 198 30 20 chr6 25278334 25279039 -124237998 - Lx4B LINE L1 -361 6697 5986 3 777 2209 317 96 10 chr6 25279207 25280175 -124236862 + Lx8 LINE L1 6423 7473 0 3 777 457 110 41 0 chr6 25280731 25280804 -124236233 - PB1D9 SINE Alu -44 76 1 3 777 6301 49 1 4 chr6 25281897 25282677 -124234360 + L1Md_F2 LINE L1 5791 6568 -14 3 777 14167 43 1 1 chr6 25285078 25287483 -124229554 + L1Md_F2 LINE L1 4131 6534 -48 3 777 534 268 46 23 chr6 25287868 25287998 -124229039 - ETnERV2-int LTR ERVK -204 7202 7070 3 777 311 38 75 0 chr6 25287999 25288052 -124228985 + L1Md_F3 LINE L1 6525 6581 -3 3 777 689 311 135 18 chr6 25288061 25288447 -124228590 - RMER5 LTR ERV1 -40 494 64 3 777 25882 6 0 0 chr6 25288480 25292118 -124224919 - L1Md_A LINE L1 0 6582 2945 3 777 3343 63 25 2 chr6 25292480 25292925 -124224112 - L1_Mus4 LINE L1 -14 6622 6168 3 777 3975 36 2 0 chr6 25292953 25293425 -124223612 - L1Md_T LINE L1 0 6582 6110 3 777 5211 16 1 0 chr6 25293425 25294216 -124222821 + L1Md_T LINE L1 5289 6080 -502 3 777 369 227 0 0 chr6 25294738 25294813 -124222224 + Lx9 LINE L1 7403 7477 -167 3 777 315 0 0 0 chr6 25294815 25294850 -124222187 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 777 573 15 0 0 chr6 25296220 25296286 -124220751 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 777 257 293 53 0 chr6 25296776 25296851 -124220186 + B1_Mm SINE Alu 65 143 -4 3 778 892 106 15 8 chr6 25297281 25297414 -124219623 + B1_Mus1 SINE Alu 3 136 -12 3 778 615 75 0 0 chr6 25297415 25297509 -124219528 + (CTAAA)n Simple_repeat Simple_repeat 3 96 0 3 778 2969 43 27 0 chr6 25298294 25298663 -124218374 + L1Md_F3 LINE L1 6192 6570 -14 3 778 450 94 0 0 chr6 25299131 25299195 -124217842 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 778 432 266 0 11 chr6 25299218 25299313 -124217724 - RSINE1 SINE B4 -67 98 5 3 778 432 0 0 0 chr6 25299418 25299466 -124217571 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 778 198 0 0 0 chr6 25299466 25299487 -124217550 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 778 736 256 258 6 chr6 25299797 25300111 -124216926 - MLT1A1 LTR MaLR -12 396 4 3 778 498 17 0 0 chr6 25301111 25301170 -124215867 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 778 498 333 40 20 chr6 25301921 25302218 -124214819 - L1M5 LINE L1 -378 5801 5499 3 778 308 279 115 19 chr6 25302361 25302518 -124214519 - L1M5 LINE L1 -736 5443 5272 3 778 1283 224 143 19 chr6 25303544 25303899 -124213138 - MTB_Mm LTR MaLR -31 376 1 3 778 629 344 127 18 chr6 25304311 25304643 -124212394 - MTE2b LTR MaLR -11 368 1 3 778 956 303 47 17 chr6 25304837 25305196 -124211841 + ORR1D2 LTR MaLR 1 370 0 3 778 210 143 0 0 chr6 25305636 25305671 -124211366 + (A)n Simple_repeat Simple_repeat 1 35 0 3 778 1555 220 76 37 chr6 25306397 25306803 -124210234 + Lx7 LINE L1 299 720 -7008 3 778 1772 199 23 14 chr6 25306805 25307238 -124209799 + Lx7 LINE L1 1354 1790 -4090 3 778 337 162 235 29 chr6 25307238 25307340 -124209697 - RMER6B LTR ERVK -336 125 3 3 778 8021 184 36 25 chr6 25307343 25307602 -124209435 + Lx7 LINE L1 4017 4174 -1706 3 778 1108 62 7 0 chr6 25307602 25307746 -124209291 + B1_Mus2 SINE Alu 2 146 -1 4 778 8021 192 57 28 chr6 25307746 25309627 -124207410 + Lx7 LINE L1 4175 6118 -1578 3 778 974 243 81 16 chr6 25309641 25309883 -124207154 + RMER1B Other Other 44 283 -783 4 778 2338 193 50 81 chr6 25309895 25310437 -124206600 + RMER1B Other Other 541 1065 -1 4 778 2169 248 6 6 chr6 25310455 25310937 -124206100 + Lx7 LINE L1 6144 6625 -1071 3 778 1991 182 66 6 chr6 25310941 25311305 -124205732 - ORR1B1 LTR MaLR -8 386 1 4 778 2271 269 67 96 chr6 25311305 25312181 -124204856 + Lx6 LINE L1 6610 7460 0 4 778 920 169 0 6 chr6 25312965 25313144 -124203893 + CT-rich Low_complexity Low_complexity 3 180 0 4 778 294 29 0 0 chr6 25313178 25313213 -124203824 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 4 778 357 336 55 41 chr6 25313220 25313366 -124203671 - B1F SINE Alu 0 149 2 4 778 1283 103 27 0 chr6 25313821 25314006 -124203031 - B2_Mm2 SINE B2 -3 192 3 4 778 180 77 0 0 chr6 25314102 25314128 -124202909 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 778 514 297 102 63 chr6 25315614 25316024 -124201013 - RLTR11B LTR ERVK -27 426 1 4 778 278 304 56 49 chr6 25316819 25316961 -124200076 - MER5A1 DNA MER1_type 0 166 24 4 778 26 0 0 0 chr6 25317605 25317631 -124199406 + AT_rich Low_complexity Low_complexity 1 26 0 4 778 30 0 0 0 chr6 25317796 25317826 -124199211 + AT_rich Low_complexity Low_complexity 1 30 0 4 778 684 220 64 23 chr6 25318404 25318576 -124198461 + Lx9 LINE L1 7021 7199 -445 4 778 513 323 77 30 chr6 25318685 25318918 -124198119 + RMER15 LTR ERVL 27 270 -305 4 778 301 277 0 0 chr6 25318943 25319008 -124198029 + RMER15 LTR ERVL 246 310 -265 4 778 383 267 23 0 chr6 25319006 25319092 -124197945 + RMER15 LTR ERVL 465 552 -23 4 778 3643 101 0 10 chr6 25319134 25319653 -124197384 - L1_Mus4 LINE L1 -5 6631 6118 4 778 1013 93 7 7 chr6 25319653 25319799 -124197238 + B2_Mm2 SINE B2 7 153 -42 4 778 752 0 11 0 chr6 25319799 25319887 -124197150 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 4 778 227 347 123 9 chr6 25320141 25320458 -124196579 - L1M5 LINE L1 -417 5762 5410 4 778 295 320 92 43 chr6 25320580 25320995 -124196042 - L1MEc LINE L1 -5148 1252 818 4 778 352 343 75 70 chr6 25321179 25321593 -124195444 - L1MEc LINE L1 -5817 583 168 4 778 311 275 48 8 chr6 25321947 25322082 -124194955 - Lx7 LINE L1 0 7696 7585 4 778 2224 267 36 23 chr6 25323813 25323923 -124193114 - Lx9 LINE L1 -61 7583 7468 4 778 297 0 0 0 chr6 25323923 25323956 -124193081 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 4 778 2224 267 36 23 chr6 25323956 25324508 -124192529 - Lx9 LINE L1 -177 7467 6912 4 778 270 0 0 0 chr6 25324512 25324542 -124192495 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 778 739 302 122 72 chr6 25324970 25325807 -124191230 - Charlie2a DNA MER1_type -759 2102 1224 4 778 287 239 196 0 chr6 25326890 25326982 -124190055 - B3 SINE B2 -10 206 97 4 778 26 0 0 0 chr6 25326993 25327019 -124190018 + AT_rich Low_complexity Low_complexity 1 26 0 4 778 279 287 113 53 chr6 25327050 25327201 -124189836 - RSINE1 SINE B4 -1 164 5 4 778 518 114 0 11 chr6 25327412 25327501 -124189536 + (TA)n Simple_repeat Simple_repeat 1 88 0 4 778 406 346 144 26 chr6 25327503 25327919 -124189118 - L1M2 LINE L1 -884 5259 4795 4 778 342 0 0 0 chr6 25328365 25328403 -124188634 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 4 778 1017 65 43 0 chr6 25328436 25328575 -124188462 - B1_Mm SINE Alu -2 145 1 4 778 23 0 0 0 chr6 25328600 25328623 -124188414 + AT_rich Low_complexity Low_complexity 1 23 0 4 778 824 281 39 4 chr6 25328630 25328887 -124188150 - Lx6 LINE L1 -26 7434 7169 4 778 333 0 0 0 chr6 25329189 25329226 -124187811 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 778 387 0 0 0 chr6 25329226 25329268 -124187769 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 778 236 344 0 0 chr6 25330274 25330367 -124186670 - L1MA5 LINE L1 -12 6288 6196 4 778 798 109 0 0 chr6 25330509 25330628 -124186409 + (GGGAGA)n Simple_repeat Simple_repeat 2 120 0 4 778 330 320 166 13 chr6 25330628 25330941 -124186096 + L1MC4a LINE L1 7512 7872 -10 4 778 777 299 58 8 chr6 25331438 25331698 -124185339 + B4A SINE B4 4 276 -16 4 778 221 0 35 0 chr6 25331853 25331882 -124185155 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 778 294 29 0 0 chr6 25332022 25332057 -124184980 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 778 339 25 0 0 chr6 25333737 25333777 -124183260 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4 778 21 95 0 0 chr6 25334954 25335017 -124182020 + AT_rich Low_complexity Low_complexity 1 63 0 4 778 480 48 0 0 chr6 25335769 25335832 -124181205 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 778 34 72 0 0 chr6 25335917 25335986 -124181051 + AT_rich Low_complexity Low_complexity 1 69 0 4 778 423 0 0 0 chr6 25336385 25336432 -124180605 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 778 337 377 39 32 chr6 25336448 25336733 -124180304 + B4A SINE B4 2 288 -4 4 778 370 260 124 63 chr6 25336943 25337354 -124179683 - Arthur1 DNA Tip100 -13 3934 3499 4 778 289 360 116 85 chr6 25337590 25337848 -124179189 - Arthur1 DNA Tip100 -3607 340 75 4 778 3390 25 2 5 chr6 25337922 25338319 -124178718 - MTA_Mm LTR MaLR 0 396 1 4 778 502 361 110 44 chr6 25338349 25338533 -124178504 + MLT2B3 LTR ERVL 6 203 -351 4 778 702 0 0 0 chr6 25338533 25338611 -124178426 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 778 502 361 110 44 chr6 25338611 25338791 -124178246 + MLT2B3 LTR ERVL 204 389 -165 4 778 321 182 0 25 chr6 25338791 25338870 -124178167 - Lx2A LINE L1 0 7008 6932 4 778 502 361 110 44 chr6 25338870 25338939 -124178098 + MLT2B3 LTR ERVL 390 468 -86 4 778 265 311 13 13 chr6 25339278 25339353 -124177684 - ID4_ SINE ID 0 83 9 4 778 254 293 59 29 chr6 25339361 25339463 -124177574 - B1F SINE Alu -2 147 43 4 778 383 308 175 0 chr6 25340350 25340470 -124176567 + RSINE1 SINE B4 2 142 -23 4 778 656 270 11 58 chr6 25340571 25340760 -124176277 - Lx9 LINE L1 -499 7145 6966 4 778 234 91 0 0 chr6 25341274 25341307 -124175730 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 4 778 2389 223 6 8 chr6 25341439 25341932 -124175105 - RMER5 LTR ERV1 -26 508 17 4 778 21 0 0 0 chr6 25342131 25342152 -124174885 + AT_rich Low_complexity Low_complexity 1 21 0 4 778 329 267 119 17 chr6 25342792 25342910 -124174127 - MER5B DNA MER1_type -41 137 8 4 778 3767 18 0 0 chr6 25342973 25343409 -124173628 + L1Md_T LINE L1 5151 5586 -297 4 778 8763 11 0 0 chr6 25343409 25344393 -124172644 + L1Md_T LINE L1 5587 6570 -12 4 778 645 259 15 0 chr6 25345188 25345319 -124171718 + B1F2 SINE Alu 1 133 -16 4 778 435 68 0 0 chr6 25345323 25345382 -124171655 + (GGGA)n Simple_repeat Simple_repeat 2 60 0 4 778 194 98 0 47 chr6 25345385 25345428 -124171609 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 778 1195 258 86 30 chr6 25345797 25346020 -124171017 + Lx8 LINE L1 6758 7000 -473 4 778 630 0 0 0 chr6 25346020 25346090 -124170947 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 778 1195 258 86 30 chr6 25346090 25346273 -124170764 + Lx8 LINE L1 7001 7187 -286 4 778 5710 211 45 15 chr6 25346476 25347700 -124169337 - Lx5 LINE L1 0 7050 5790 4 778 390 21 0 0 chr6 25347703 25347750 -124169287 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 778 5660 163 48 18 chr6 25347753 25348813 -124168224 - Lx4A LINE L1 -9 7049 5958 4 778 506 362 95 75 chr6 25348923 25349586 -124167451 - MLT1E1A LTR MaLR -4 676 1 4 778 627 301 5 94 chr6 25349705 25349929 -124167108 - B3 SINE B2 -3 213 10 4 778 205 186 0 0 chr6 25350859 25350902 -124166135 + T-rich Low_complexity Low_complexity 1 43 0 4 778 1737 151 93 93 chr6 25351739 25352214 -124164823 - IAPLTR2_Mm LTR ERVK 0 475 1 4 778 193 216 100 75 chr6 25352233 25352313 -124164724 + L3 LINE CR1 2037 2118 -2371 4 778 288 0 0 0 chr6 25352353 25352385 -124164652 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 778 531 0 0 0 chr6 25352385 25352443 -124164594 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 778 245 27 54 0 chr6 25352802 25352839 -124164198 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 4 778 521 203 85 0 chr6 25354107 25354225 -124162812 - B1_Mur2 SINE Alu -21 128 1 4 778 230 262 0 121 chr6 25354147 25354238 -124162799 - MT2B LTR ERVL -368 233 154 4 778 254 250 59 59 chr6 25354693 25354778 -124162259 + B3A SINE B2 112 196 -2 4 778 567 309 73 17 chr6 25354857 25355035 -124162002 + B4A SINE B4 68 255 -37 4 778 438 101 0 0 chr6 25355046 25355115 -124161922 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 778 238 289 36 84 chr6 25356127 25356210 -124160827 - MER67D LTR ERV1 -275 239 161 4 778 220 334 179 34 chr6 25356800 25357125 -124159912 - L2a LINE L2 -1 3425 3054 4 778 239 294 138 14 chr6 25358043 25358181 -124158856 - L2a LINE L2 -787 2632 2478 4 778 384 260 145 30 chr6 25358215 25358512 -124158525 - L1MA6 LINE L1 -10 6290 5960 4 778 23 0 0 0 chr6 25358749 25358772 -124158265 + AT_rich Low_complexity Low_complexity 1 23 0 4 778 266 50 0 24 chr6 25359149 25359190 -124157847 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4 778 215 329 0 13 chr6 25359265 25359342 -124157695 - ID4_ SINE ID -2 81 6 4 778 7788 101 45 2 chr6 25359537 25361466 -124155571 - L1Md_F2 LINE L1 0 6582 4421 4 778 13240 70 3 0 chr6 25361464 25363272 -124153765 - L1Md_F2 LINE L1 -2635 3248 1436 4 778 2486 333 91 38 chr6 25363265 25363969 -124153068 - Lx8 LINE L1 -151 7322 6584 4 778 1057 103 0 0 chr6 25363969 25364114 -124152923 - B1_Mm SINE Alu -2 145 1 4 778 2486 306 101 26 chr6 25364114 25365344 -124151693 - Lx8 LINE L1 -890 6583 5246 4 778 468 0 0 0 chr6 25365344 25365396 -124151641 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 778 2011 273 113 10 chr6 25365396 25365625 -124151412 - Lx8 LINE L1 -635 5245 5002 4 778 297 0 0 0 chr6 25366725 25366758 -124150279 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 778 1138 52 0 0 chr6 25366758 25366894 -124150143 - B1_Mus2 SINE Alu -10 137 2 4 778 621 290 6 25 chr6 25367586 25367745 -124149292 + RSINE1 SINE B4 6 161 -4 4 778 279 212 44 0 chr6 25367758 25367871 -124149166 + (TATATG)n Simple_repeat Simple_repeat 5 122 0 4 778 8814 144 11 102 chr6 25369904 25371512 -124145525 - Lx3_Mus LINE L1 -157 6852 5407 4 778 286 329 0 0 chr6 25371512 25371597 -124145440 - B4 SINE B4 -127 165 81 4 778 8814 144 11 102 chr6 25371597 25372418 -124144619 - Lx3_Mus LINE L1 -157 5406 4667 4 778 243 0 0 0 chr6 25372418 25372445 -124144592 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 778 8814 98 7 87 chr6 25372445 25373234 -124143803 - Lx3_Mus LINE L1 -1220 4666 4002 4 778 386 146 195 0 chr6 25373231 25373313 -124143724 - Lx6 LINE L1 -666 6794 6697 5 778 2507 253 202 25 chr6 25373312 25373640 -124143397 + Lx6 LINE L1 5830 6207 -1253 5 778 3075 34 37 3 chr6 25373640 25374023 -124143014 + MTA_Mm LTR MaLR 1 396 0 5 778 2507 272 43 29 chr6 25374023 25374497 -124142540 + Lx6 LINE L1 6208 6697 -763 5 778 596 330 46 33 chr6 25374507 25374914 -124142123 - Lx9 LINE L1 -153 7491 7072 5 778 657 273 82 104 chr6 25374916 25375423 -124141614 + Lx9 LINE L1 5658 6199 -1274 5 778 429 20 0 0 chr6 25375423 25375473 -124141564 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 778 330 98 0 0 chr6 25375473 25375523 -124141514 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 778 434 347 107 53 chr6 25375523 25375619 -124141418 + Lx9 LINE L1 6200 6294 -1179 5 778 436 200 0 11 chr6 25375623 25375714 -124141323 - L1M2 LINE L1 -529 5762 5673 5 778 330 277 72 26 chr6 25376800 25376908 -124140129 - B1_Mur4 SINE Alu -9 108 1 5 778 288 254 82 0 chr6 25377318 25377428 -124139609 - L1MA4A LINE L1 -375 5928 5810 5 778 1063 75 90 23 chr6 25378016 25378193 -124138844 - L1Md_F2 LINE L1 0 6582 6394 5 778 571 318 13 0 chr6 25378268 25378419 -124138618 - RSINE1 SINE B4 -4 161 9 5 778 356 291 93 25 chr6 25379556 25379718 -124137319 + Tigger14a DNA MER2_type 32 204 -120 5 778 1852 284 14 10 chr6 25379985 25380497 -124136540 - Lx8 LINE L1 -341 7132 6619 5 778 1277 242 83 42 chr6 25380497 25380881 -124136156 + MTD LTR MaLR 6 405 -14 5 778 305 257 0 41 chr6 25380889 25380962 -124136075 - Lx8 LINE L1 -852 6621 6552 5 778 231 36 0 0 chr6 25381007 25381035 -124136002 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 778 228 67 0 0 chr6 25381702 25381732 -124135305 + (CAA)n Simple_repeat Simple_repeat 3 32 0 5 778 387 281 22 38 chr6 25382144 25382329 -124134708 + L1MA9 LINE L1 5757 5938 -374 5 778 226 278 0 0 chr6 25382392 25382446 -124134591 - Lx8 LINE L1 -953 6520 6467 5 778 477 291 0 0 chr6 25382438 25382555 -124134482 + Lx8 LINE L1 6554 6670 -803 5 778 1571 134 0 0 chr6 25382873 25383120 -124133917 - Lx2 LINE L1 0 6997 6751 5 778 4070 132 30 11 chr6 25383127 25383792 -124133245 + Lx2B LINE L1 6036 6713 -287 5 778 503 282 62 21 chr6 25383929 25384121 -124132916 + Lx8 LINE L1 6781 6980 -493 5 778 6448 149 35 29 chr6 25384136 25385962 -124131075 + Lx2 LINE L1 5050 6651 -346 5 778 860 270 117 42 chr6 25385993 25386422 -124130615 + Lx8 LINE L1 7011 7471 -2 5 778 283 231 11 42 chr6 25386478 25386573 -124130464 + L1MA8 LINE L1 5947 6038 -253 5 778 564 160 0 0 chr6 25386794 25386894 -124130143 + GA-rich Low_complexity Low_complexity 5 104 0 5 778 1245 96 0 0 chr6 25386894 25387072 -124129965 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 778 304 298 32 16 chr6 25388467 25388593 -124128444 - MIRb SINE MIR -20 248 121 5 778 283 234 42 0 chr6 25388653 25388733 -124128304 - B1F2 SINE Alu -51 96 10 5 778 726 203 198 0 chr6 25388781 25388958 -124128079 - B3 SINE B2 -2 214 3 5 778 486 0 0 0 chr6 25389963 25390017 -124127020 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 5 778 252 0 0 0 chr6 25390038 25390066 -124126971 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 778 281 267 128 71 chr6 25390171 25390312 -124126725 - B1F SINE Alu 0 149 1 5 778 190 367 100 9 chr6 25390340 25390450 -124126587 - MIRc SINE MIR -142 126 7 5 778 5479 112 8 12 chr6 25390654 25391482 -124125555 + Lx LINE L1 5826 6650 -4 5 778 243 0 0 0 chr6 25391822 25391849 -124125188 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 778 191 125 25 0 chr6 25391859 25391899 -124125138 + (TTG)n Simple_repeat Simple_repeat 1 41 0 5 778 1661 107 12 4 chr6 25392573 25392827 -124124210 + L1_Mus3 LINE L1 6380 6635 -3 5 778 314 32 97 0 chr6 25392859 25392921 -124124116 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 5 778 466 37 22 2 chr6 25393136 25393201 -124123836 - RLTR13A LTR ERVK -825 68 1 5 778 710 299 83 33 chr6 25393210 25393452 -124123585 + B4A SINE B4 37 290 -2 5 778 434 18 18 0 chr6 25394597 25394652 -124122385 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 778 284 0 28 0 chr6 25395288 25395324 -124121713 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 5 778 231 259 11 56 chr6 25395959 25396049 -124120988 + GA-rich Low_complexity Low_complexity 5 90 0 5 778 6486 45 12 2 chr6 25396207 25397027 -124120010 - L1Md_F2 LINE L1 0 6582 5755 5 778 368 221 70 0 chr6 25397501 25397587 -124119450 - ID_B1 SINE B4 -3 221 130 5 778 270 315 67 11 chr6 25397525 25397615 -124119422 - B1F1 SINE Alu -36 113 19 5 778 1728 83 7 73 chr6 25397743 25398017 -124119020 + L1_Mus2 LINE L1 6311 6566 0 5 778 923 194 14 62 chr6 25398069 25398344 -124118693 - RMER17C LTR ERVK -64 346 85 5 778 237 33 0 0 chr6 25398345 25398375 -124118662 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 778 3169 291 48 32 chr6 25398377 25399293 -124117744 - Lx7 LINE L1 -393 7303 6378 5 778 2217 176 2 32 chr6 25399293 25399699 -124117338 - ORR1B1 LTR MaLR 0 394 1 5 778 3169 291 48 32 chr6 25399699 25400018 -124117019 - Lx7 LINE L1 -1319 6377 6048 5 778 397 323 15 0 chr6 25401198 25401328 -124115709 + MTEa LTR MaLR 52 183 -196 5 778 292 307 38 38 chr6 25401343 25401448 -124115589 + PB1D7 SINE Alu 14 118 -2 5 778 302 284 14 0 chr6 25402024 25402098 -124114939 - PB1D10 SINE Alu -26 91 17 5 778 582 296 71 83 chr6 25402372 25402722 -124114315 + RMER15 LTR ERVL 186 531 -44 5 778 565 327 75 45 chr6 25403074 25403340 -124113697 + B4A SINE B4 5 278 -14 5 778 363 18 17 35 chr6 25403375 25403433 -124113604 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 778 30343 65 63 2 chr6 25403485 25409139 -124107898 - L1Md_F2 LINE L1 -1 6581 555 5 778 3661 200 50 137 chr6 25409388 25409499 -124107538 - RMER1A Other Other -10 1020 900 5 778 405 0 0 0 chr6 25409499 25409544 -124107493 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 778 3661 205 57 133 chr6 25409544 25410582 -124106455 - RMER1A Other Other -131 899 34 5 778 1530 309 48 21 chr6 25410732 25411248 -124105789 + RMER1B Other Other 7 536 -530 5 778 714 328 100 25 chr6 25411301 25411901 -124105136 - L1MA5 LINE L1 -29 6271 5627 5 778 582 338 0 0 chr6 25412014 25412159 -124104878 - ID_B1 SINE B4 0 224 80 5 778 230 176 0 19 chr6 25412159 25412211 -124104826 + CT-rich Low_complexity Low_complexity 2 52 0 5 778 184 372 12 0 chr6 25412329 25412415 -124104622 + L2c LINE L2 3258 3344 -43 5 778 31 68 0 0 chr6 25414065 25414124 -124102913 + AT_rich Low_complexity Low_complexity 1 59 0 5 778 322 289 102 43 chr6 25414325 25414560 -124102477 - L1MA8 LINE L1 -306 6006 5758 5 778 6544 95 54 1 chr6 25414578 25415538 -124101499 - Lx3C LINE L1 -278 6698 5702 5 778 1858 259 75 55 chr6 25415620 25416299 -124100738 - Lx9 LINE L1 -5 7639 6947 5 778 663 250 53 0 chr6 25416313 25416465 -124100572 + Lx9 LINE L1 6742 6901 -743 5 778 245 252 0 0 chr6 25416530 25416595 -124100442 - L1MA8 LINE L1 -501 5667 5603 5 778 290 115 0 19 chr6 25416616 25416669 -124100368 + (ATTG)n Simple_repeat Simple_repeat 3 54 0 5 778 278 362 8 8 chr6 25416671 25416788 -124100249 - PB1 SINE Alu -10 117 1 5 778 966 256 106 27 chr6 25416913 25417214 -124099823 - MTE2a LTR MaLR -1 378 54 5 778 568 264 24 32 chr6 25417372 25417619 -124099418 - L1MA8 LINE L1 -1014 5126 4882 5 778 375 60 0 0 chr6 25417911 25417961 -124099076 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 778 413 309 42 92 chr6 25417967 25418273 -124098764 - B4 SINE B4 0 292 2 5 778 266 316 12 12 chr6 25418294 25418374 -124098663 - ID4 SINE ID -3 80 1 5 778 252 324 78 70 chr6 25418386 25418441 -124098596 - L1ME3A LINE L1 -15 6158 6106 5 778 2757 58 12 0 chr6 25418441 25418783 -124098254 + ORR1A1 LTR MaLR 1 346 0 5 778 252 324 78 70 chr6 25418783 25419112 -124097925 - L1ME3A LINE L1 -68 6105 5771 5 778 592 282 43 61 chr6 25419149 25419379 -124097658 - Lx8 LINE L1 -48 7425 7200 5 778 3953 31 4 2 chr6 25420145 25420633 -124096404 + MTA_Mm-int LTR MaLR 610 1098 0 5 778 2463 51 33 9 chr6 25420633 25420968 -124096069 + MTA_Mm LTR MaLR 1 343 -53 5 778 281 336 84 62 chr6 25421039 25421347 -124095690 - BLACKJACK DNA AcHobo -136 2808 2494 5 778 201 250 0 0 chr6 25421349 25421409 -124095628 + A-rich Low_complexity Low_complexity 1 60 0 5 778 219 69 0 0 chr6 25422478 25422507 -124094530 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 778 374 349 0 0 chr6 25423242 25423348 -124093689 + MLT1E LTR MaLR 132 237 -416 5 778 1323 185 0 0 chr6 25423762 25423994 -124093043 - Lx2B LINE L1 -280 6720 6489 5 778 585 260 144 0 chr6 25424011 25424192 -124092845 + Lx3C LINE L1 6741 6947 -29 5 778 566 290 119 24 chr6 25424235 25424656 -124092381 + L1M2 LINE L1 4820 5280 -863 5 778 2366 110 0 17 chr6 25425482 25425548 -124091489 + Lx2 LINE L1 6651 6716 -281 5 778 3539 20 0 0 chr6 25425548 25425944 -124091093 - MTA_Mm LTR MaLR 0 396 1 5 778 2366 110 0 17 chr6 25425944 25426229 -124090808 + Lx2 LINE L1 6717 6996 -1 5 778 226 64 62 21 chr6 25426484 25426532 -124090505 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 5 779 648 0 0 0 chr6 25428976 25429048 -124087989 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 779 390 173 11 100 chr6 25429148 25429238 -124087799 + RMER19B LTR ERVK 308 389 -513 5 779 300 330 172 5 chr6 25429408 25429594 -124087443 - Lx8 LINE L1 -100 7373 7157 5 779 939 340 12 18 chr6 25429665 25430000 -124087037 - Lx8 LINE L1 -898 6575 6243 5 779 1111 89 0 0 chr6 25430473 25430619 -124086418 - B1_Mus2 SINE Alu 0 147 2 5 779 647 84 48 27 chr6 25430788 25430934 -124086103 + RMER17B LTR ERVK 312 460 -498 5 779 442 376 87 19 chr6 25430922 25431128 -124085909 + B4 SINE B4 66 285 -7 5 779 3940 132 8 28 chr6 25431939 25432585 -124084452 + Lx2 LINE L1 6355 6987 -10 5 779 23 33 0 0 chr6 25432928 25432958 -124084079 + AT_rich Low_complexity Low_complexity 1 30 0 5 779 1025 285 88 13 chr6 25433693 25433999 -124083038 + Lx8 LINE L1 7142 7470 -3 5 779 227 31 31 0 chr6 25434323 25434355 -124082682 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 5 779 1746 291 13 55 chr6 25434388 25435067 -124081970 + Lx6 LINE L1 6455 7460 0 5 779 23 33 0 0 chr6 25435697 25435727 -124081310 + AT_rich Low_complexity Low_complexity 1 30 0 5 779 407 52 17 0 chr6 25435961 25436019 -124081018 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 779 329 303 26 11 chr6 25436030 25436191 -124080846 - L1MA5 LINE L1 -368 5932 5726 6 779 462 271 20 11 chr6 25436191 25436375 -124080662 + Lx7 LINE L1 5526 5730 -1966 6 779 920 335 37 76 chr6 25436696 25437233 -124079804 - MLT2B1 LTR ERVL -2 518 3 6 779 214 333 10 10 chr6 25437641 25437744 -124079293 + (CATA)n Simple_repeat Simple_repeat 3 105 0 6 779 2736 182 18 16 chr6 25438189 25438748 -124078289 - RLTR20B2 LTR ERVK 0 560 1 6 779 704 242 72 8 chr6 25439533 25439770 -124077267 + Lx9 LINE L1 7350 7601 -43 6 779 911 184 21 135 chr6 25439842 25440131 -124076906 - Lx9 LINE L1 -17 7627 7372 6 779 27775 81 9 2 chr6 25440127 25445468 -124071569 - L1Md_F2 LINE L1 0 6582 1213 6 779 5060 134 33 1 chr6 25445470 25446291 -124070746 - L1Md_F LINE L1 -5411 1108 283 6 779 724 273 145 0 chr6 25446313 25446555 -124070482 - Lx9 LINE L1 -303 7341 7065 6 779 610 165 0 16 chr6 25446571 25446700 -124070337 - Lx LINE L1 -1 6653 6527 6 779 2827 270 47 24 chr6 25446703 25447553 -124069484 - Lx9 LINE L1 -602 7042 6027 6 779 220 236 43 11 chr6 25449061 25449155 -124067882 + (TA)n Simple_repeat Simple_repeat 2 98 0 6 779 335 340 36 71 chr6 25449184 25449352 -124067685 - RSINE1 SINE B4 0 165 4 6 779 3196 211 54 24 chr6 25449405 25450166 -124066871 - Lx2B LINE L1 0 7000 6217 6 779 2645 167 28 0 chr6 25450164 25450700 -124066337 + Lx2B LINE L1 5522 6078 -922 6 779 906 60 0 0 chr6 25450768 25450885 -124066152 + (TC)n Simple_repeat Simple_repeat 2 118 0 6 779 3804 163 14 12 chr6 25450932 25451597 -124065440 - Lx3C LINE L1 -7 6969 6304 6 779 410 189 16 37 chr6 25451597 25451719 -124065318 - Lx3C LINE L1 -764 6212 6096 6 779 250 264 98 16 chr6 25451755 25451878 -124065159 - L1MC4 LINE L1 -1092 6950 6818 6 779 32 26 0 0 chr6 25452202 25452241 -124064796 + AT_rich Low_complexity Low_complexity 1 39 0 6 779 2606 154 24 65 chr6 25452281 25452831 -124064206 - RLTR11A2 LTR ERVK 0 527 1 6 779 1712 285 102 25 chr6 25453260 25454181 -124062856 - L1MA9 LINE L1 -66 6246 5255 6 779 1311 153 15 18 chr6 25455071 25455344 -124061693 - Lx2 LINE L1 -1 6996 6725 6 779 397 68 89 22 chr6 25456493 25456603 -124060434 + T-rich Low_complexity Low_complexity 29 145 0 6 779 784 162 14 14 chr6 25456603 25456747 -124060290 - B1_Mus1 SINE Alu 0 148 5 6 779 397 68 89 22 chr6 25456747 25456771 -124060266 + T-rich Low_complexity Low_complexity 3 28 0 6 779 253 300 93 0 chr6 25457068 25457208 -124059829 + Charlie1b DNA MER1_type 51 203 -320 6 779 673 350 26 13 chr6 25457312 25457700 -124059337 + L1M2 LINE L1 2500 2892 -3251 6 779 30 45 0 0 chr6 25457771 25457815 -124059222 + AT_rich Low_complexity Low_complexity 1 44 0 6 779 3614 99 0 6 chr6 25457860 25458366 -124058671 - L1_Mus1 LINE L1 0 6567 6065 6 779 2887 69 0 63 chr6 25458366 25458797 -124058240 + L1Md_F2 LINE L1 5705 6108 -474 6 779 384 223 50 0 chr6 25458793 25458914 -124058123 + L1M2 LINE L1 2975 3101 -3042 6 779 397 68 89 22 chr6 25459674 25459784 -124057253 + T-rich Low_complexity Low_complexity 29 145 0 6 779 784 162 14 14 chr6 25459784 25459928 -124057109 - B1_Mus1 SINE Alu 0 148 5 6 779 397 68 89 22 chr6 25459928 25459952 -124057085 + T-rich Low_complexity Low_complexity 3 28 0 6 779 253 300 93 0 chr6 25460249 25460389 -124056648 + Charlie1b DNA MER1_type 51 203 -320 6 779 673 350 26 13 chr6 25460493 25460881 -124056156 + L1M2 LINE L1 2500 2892 -3251 6 779 31 44 0 0 chr6 25460952 25460997 -124056040 + AT_rich Low_complexity Low_complexity 1 45 0 6 779 3614 99 0 6 chr6 25461041 25461547 -124055490 - L1_Mus1 LINE L1 0 6567 6065 6 779 2887 69 0 63 chr6 25461547 25461978 -124055059 + L1Md_F2 LINE L1 5705 6108 -474 6 779 384 223 50 0 chr6 25461974 25462095 -124054942 + L1M2 LINE L1 2975 3101 -3042 6 779 397 68 89 22 chr6 25462855 25462965 -124054072 + T-rich Low_complexity Low_complexity 29 145 0 6 779 784 162 14 14 chr6 25462965 25463109 -124053928 - B1_Mus1 SINE Alu 0 148 5 6 779 397 68 89 22 chr6 25463109 25463133 -124053904 + T-rich Low_complexity Low_complexity 3 28 0 6 779 253 300 93 0 chr6 25463430 25463570 -124053467 + Charlie1b DNA MER1_type 51 203 -320 6 779 686 347 26 13 chr6 25463674 25464062 -124052975 + L1M2 LINE L1 2500 2892 -3251 6 779 30 45 0 0 chr6 25464133 25464177 -124052860 + AT_rich Low_complexity Low_complexity 1 44 0 6 779 3614 99 0 6 chr6 25464222 25464728 -124052309 - L1_Mus1 LINE L1 0 6567 6065 6 779 2860 72 0 63 chr6 25464728 25465159 -124051878 + L1Md_F2 LINE L1 5705 6108 -474 6 779 384 223 50 0 chr6 25465155 25465276 -124051761 + L1M2 LINE L1 2975 3101 -3042 6 779 307 74 96 24 chr6 25466036 25466136 -124050901 + T-rich Low_complexity Low_complexity 29 135 0 6 779 784 162 14 14 chr6 25466136 25466280 -124050757 - B1_Mus1 SINE Alu 0 148 5 6 779 307 74 96 24 chr6 25466280 25466304 -124050733 + T-rich Low_complexity Low_complexity 3 28 0 6 779 253 300 93 0 chr6 25466601 25466741 -124050296 + Charlie1b DNA MER1_type 51 203 -320 6 779 686 347 26 13 chr6 25466845 25467233 -124049804 + L1M2 LINE L1 2500 2892 -3251 6 779 30 45 0 0 chr6 25467304 25467348 -124049689 + AT_rich Low_complexity Low_complexity 1 44 0 6 779 3614 99 0 6 chr6 25467393 25467899 -124049138 - L1_Mus1 LINE L1 0 6567 6065 6 779 2860 72 0 63 chr6 25467899 25468330 -124048707 + L1Md_F2 LINE L1 5705 6108 -474 6 779 389 211 53 0 chr6 25468334 25468448 -124048589 + L1M2 LINE L1 2982 3101 -3042 6 779 262 77 100 25 chr6 25469208 25469303 -124047734 + T-rich Low_complexity Low_complexity 29 130 0 6 779 784 162 14 14 chr6 25469303 25469447 -124047590 - B1_Mus1 SINE Alu 0 148 5 6 779 262 77 100 25 chr6 25469447 25469471 -124047566 + T-rich Low_complexity Low_complexity 3 28 0 6 779 253 300 93 0 chr6 25469768 25469908 -124047129 + Charlie1b DNA MER1_type 51 203 -320 6 779 673 350 26 13 chr6 25470012 25470400 -124046637 + L1M2 LINE L1 2500 2892 -3251 6 779 31 44 0 0 chr6 25470471 25470516 -124046521 + AT_rich Low_complexity Low_complexity 1 45 0 6 779 3614 99 0 6 chr6 25470560 25471066 -124045971 - L1_Mus1 LINE L1 0 6567 6065 6 779 2887 69 0 63 chr6 25471066 25471497 -124045540 + L1Md_F2 LINE L1 5705 6108 -474 6 779 849 300 60 86 chr6 25471493 25472536 -124044501 + L1M2 LINE L1 2975 3990 -2153 6 779 597 307 78 0 chr6 25472789 25473046 -124043991 + L1MB1 LINE L1 5886 6162 -6 6 779 267 93 0 0 chr6 25473671 25473714 -124043323 + (T)n Simple_repeat Simple_repeat 1 43 0 6 779 206 32 0 31 chr6 25473967 25473999 -124043038 + (TAAAAA)n Simple_repeat Simple_repeat 6 36 0 6 779 206 359 67 25 chr6 25475699 25475819 -124041218 - MIR SINE MIR -119 143 19 6 779 1203 93 0 6 chr6 25476650 25476823 -124040214 + B2_Mm2 SINE B2 1 172 -23 6 779 12164 9 0 0 chr6 25476824 25478209 -124038828 - L1Md_A LINE L1 -599 5284 3900 6 779 2599 14 0 0 chr6 25478202 25478495 -124038542 + L1Md_A LINE L1 5294 5586 -297 6 779 8810 15 0 0 chr6 25478495 25479521 -124037516 + L1Md_A LINE L1 5587 6582 0 6 779 257 347 61 0 chr6 25481120 25481218 -124035819 - MTEb LTR MaLR -229 150 47 6 779 235 322 81 24 chr6 25481538 25481662 -124035375 + MLT1F2 LTR MaLR 424 554 -6 6 779 206 302 159 23 chr6 25481691 25481823 -124035214 - L2a LINE L2 -287 3139 2990 6 779 431 60 15 0 chr6 25482271 25482338 -124034699 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 779 1124 72 0 0 chr6 25482483 25482621 -124034416 - B1_Mm SINE Alu -9 138 1 6 779 2707 203 72 2 chr6 25484241 25484809 -124032228 + Lx LINE L1 6047 6654 0 6 779 773 293 14 0 chr6 25484976 25485184 -124031853 - B3 SINE B2 -3 213 3 6 779 185 0 40 0 chr6 25485872 25485897 -124031140 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 779 1740 289 42 21 chr6 25485966 25486686 -124030351 - Lx5 LINE L1 -21 7029 6383 6 779 723 194 0 30 chr6 25486686 25486819 -124030218 + Lx5 LINE L1 6232 6360 -690 6 779 523 289 92 20 chr6 25486896 25487368 -124029669 - L1MA7 LINE L1 -63 6228 5663 6 779 4298 209 54 31 chr6 25487407 25488308 -124028729 - Lx5 LINE L1 -8 7042 6121 6 779 292 282 115 0 chr6 25488388 25488528 -124028509 - L1MA7 LINE L1 -783 5508 5351 6 779 924 264 191 12 chr6 25488540 25488902 -124028135 - MTD LTR MaLR -2 417 1 6 779 557 119 0 27 chr6 25489227 25489339 -124027698 - L1_Mus3 LINE L1 -1 6637 6529 6 779 1876 27 5 0 chr6 25489380 25489603 -124027434 + L1Md_F2 LINE L1 6356 6579 -3 6 779 315 0 0 0 chr6 25489669 25489704 -124027333 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 779 315 0 0 0 chr6 25489704 25489738 -124027299 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 779 2785 26 6 178 chr6 25490355 25490821 -124026216 + RLTR10 LTR ERVK 1 386 -4 6 779 523 110 43 32 chr6 25490855 25490949 -124026088 + RLTR10A LTR ERVK 317 411 0 6 779 4728 48 1 2 chr6 25490949 25491720 -124025317 + RLTR10-int LTR ERVK 302 998 -989 6 779 318 256 62 39 chr6 25491784 25491914 -124025123 + RLTR10-int LTR ERVK 1462 1594 -5987 6 779 8684 26 0 1 chr6 25491996 25492992 -124024045 + RLTR10-int LTR ERVK 990 1984 -3 6 779 2671 39 6 178 chr6 25492994 25493460 -124023577 + RLTR10 LTR ERVK 1 386 -4 6 779 3162 139 37 73 chr6 25494924 25495514 -124021523 + Lx3C LINE L1 6400 6968 -8 6 779 1352 279 85 71 chr6 25495537 25496182 -124020855 + L1MD1 LINE L1 5417 6070 -172 6 779 285 317 134 15 chr6 25497355 25497557 -124019480 + MER33 DNA MER1_type 19 244 -80 6 779 424 233 43 0 chr6 25498042 25498158 -124018879 - Lx9 LINE L1 -444 7200 7080 6 779 664 216 20 13 chr6 25498155 25498305 -124018732 + Lx9 LINE L1 7188 7338 -306 6 779 276 120 0 0 chr6 25498623 25498673 -124018364 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 779 1253 255 27 15 chr6 25498894 25499224 -124017813 + Lx7 LINE L1 6932 7265 -431 6 779 4518 36 4 9 chr6 25499218 25499980 -124017057 - L1Md_F2 LINE L1 -444 6138 5379 6 779 1873 34 25 4 chr6 25500000 25500235 -124016802 + L1Md_F2 LINE L1 6339 6578 -4 1 779 1346 222 40 49 chr6 25500268 25500698 -124016339 + Lx7 LINE L1 7271 7696 0 2 779 28 0 0 0 chr6 25500914 25500942 -124016095 + AT_rich Low_complexity Low_complexity 1 28 0 3 779 37802 32 1 1 chr6 25500942 25507814 -124009223 - L1Md_T LINE L1 0 6585 1 4 779 11922 66 1 3 chr6 25508982 25510571 -124006466 + L1_Mm LINE L1 2851 4436 -1447 5 779 36481 32 1 0 chr6 25510572 25515556 -124001481 + L1Md_T LINE L1 643 5586 -297 6 779 8298 40 0 0 chr6 25515556 25516552 -124000485 + L1Md_T LINE L1 5587 6582 0 6 779 9076 66 2 2 chr6 25516556 25517714 -123999323 + L1_Mm LINE L1 4427 5586 -297 5 779 7904 45 16 0 chr6 25517714 25518733 -123998304 + L1Md_F2 LINE L1 5587 6582 0 7 779 9076 66 2 2 chr6 25518733 25518752 -123998285 + L1_Mm LINE L1 5587 5606 -277 5 779 1294 59 0 6 chr6 25519277 25519447 -123997590 - L1_Mus1 LINE L1 0 6567 6399 8 779 207 270 85 59 chr6 25519533 25519680 -123997357 - MIRb SINE MIR -14 248 96 9 779 1139 83 0 0 chr6 25519898 25520043 -123996994 + B1_Mus1 SINE Alu 2 146 -2 1 779 1901 178 11 3 chr6 25522621 25522971 -123994066 - RLTR15 LTR ERVK -6 353 1 1 779 344 243 0 0 chr6 25522976 25523050 -123993987 - Lx8 LINE L1 -317 7156 7083 1 779 265 300 130 21 chr6 25523634 25523872 -123993165 + L1_Mur3 LINE L1 4386 4649 -1491 1 779 187 185 0 58 chr6 25523880 25523949 -123993088 + (CATA)n Simple_repeat Simple_repeat 4 68 0 1 779 898 307 99 24 chr6 25524134 25525026 -123992011 + L1_Mur3 LINE L1 4895 5860 -20 1 779 422 370 0 7 chr6 25525227 25525366 -123991671 + ID_B1 SINE B4 81 218 -6 1 779 21 0 0 0 chr6 25527056 25527077 -123989960 + AT_rich Low_complexity Low_complexity 1 21 0 1 779 2138 222 31 120 chr6 25527456 25528125 -123988912 - RMER19C LTR ERVK -1 610 1 1 779 1084 253 133 144 chr6 25529636 25530329 -123986708 + RMER6D LTR ERVK 36 720 0 1 779 216 0 0 0 chr6 25530715 25530739 -123986298 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 779 25 75 0 0 chr6 25530889 25530942 -123986095 + AT_rich Low_complexity Low_complexity 1 53 0 2 779 262 245 0 0 chr6 25531091 25531140 -123985897 + B1_Mur2 SINE Alu 61 109 -40 2 779 277 264 150 48 chr6 25531268 25531415 -123985622 + MER82 DNA MER2_type 1 162 -491 2 779 1080 318 22 52 chr6 25531832 25532279 -123984758 + MER82 DNA MER2_type 197 630 -23 2 779 728 193 29 0 chr6 25533241 25533381 -123983656 + B1_Mus1 SINE Alu 3 146 -2 2 779 192 77 0 0 chr6 25533387 25533413 -123983624 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 779 660 168 9 0 chr6 25533442 25533549 -123983488 + B3 SINE B2 23 130 -86 2 779 237 281 15 30 chr6 25533896 25533962 -123983075 + MamRep605 Unknown Unknown 39 103 -773 2 779 282 263 13 26 chr6 25534424 25534502 -123982535 + Lx8 LINE L1 6303 6379 -1094 2 779 612 285 38 6 chr6 25534608 25534767 -123982270 + B3 SINE B2 47 210 -6 2 779 261 0 0 0 chr6 25534841 25534870 -123982167 + (CAGT)n Simple_repeat Simple_repeat 4 32 0 2 779 1045 266 125 42 chr6 25535147 25535484 -123981553 + ORR1D2 LTR MaLR 6 370 0 3 779 216 86 0 0 chr6 25536592 25536627 -123980410 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 779 7333 198 27 3 chr6 25536748 25538263 -123978774 + Lx5 LINE L1 5486 7047 -3 3 779 1439 48 0 36 chr6 25538968 25539161 -123977876 - L1_Mus1 LINE L1 -2 6565 6380 3 779 24 32 0 0 chr6 25539689 25539720 -123977317 + AT_rich Low_complexity Low_complexity 1 31 0 3 779 308 314 71 28 chr6 25541119 25541260 -123975777 - B1F1 SINE Alu 0 149 3 3 779 613 254 46 34 chr6 25542086 25542261 -123974776 - B3A SINE B2 -18 180 4 3 779 1241 261 109 0 chr6 25542940 25543269 -123973768 + MTD LTR MaLR 53 417 -2 3 779 236 321 14 7 chr6 25543381 25543478 -123973559 + MLT1A0 LTR MaLR 244 385 -23 3 779 4075 143 56 6 chr6 25543479 25544156 -123972881 - RMER19A LTR ERVK -26 711 1 3 779 201 146 0 0 chr6 25544477 25544525 -123972512 + (TTG)n Simple_repeat Simple_repeat 1 48 0 4 779 457 252 40 53 chr6 25544570 25544721 -123972316 - B1F SINE Alu 0 149 1 4 779 1349 279 48 9 chr6 25544745 25545164 -123971873 + Lx2B LINE L1 6566 7000 0 4 779 225 0 0 0 chr6 25545762 25545787 -123971250 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 779 501 330 49 42 chr6 25546338 25546740 -123970297 - L1ME2 LINE L1 -45 6119 5714 4 779 3489 58 13 9 chr6 25546740 25547196 -123969841 + L1Md_F3 LINE L1 6127 6584 0 4 779 501 330 49 42 chr6 25547196 25547243 -123969794 - L1ME2 LINE L1 -451 5713 5667 4 779 420 20 0 0 chr6 25548364 25548413 -123968624 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 779 186 43 0 0 chr6 25548906 25548929 -123968108 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 779 8495 25 0 1 chr6 25550157 25551511 -123965526 - L1Md_T LINE L1 0 6582 5231 4 779 1461 29 0 0 chr6 25551510 25551684 -123965353 + L1Md_T LINE L1 5077 5250 -633 4 779 1117 95 0 0 chr6 25552393 25552540 -123964497 + B1_Mus2 SINE Alu 1 147 0 4 779 207 0 0 0 chr6 25552540 25552563 -123964474 + (A)n Simple_repeat Simple_repeat 1 23 0 5 779 4026 56 40 2 chr6 25552690 25553208 -123963829 - L1Md_F2 LINE L1 0 6582 6045 5 779 1521 262 86 79 chr6 25553551 25554182 -123962855 - RLTR26 LTR ERVK -7 635 1 5 779 369 62 0 0 chr6 25554339 25554387 -123962650 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 779 3795 147 105 28 chr6 25554551 25555301 -123961736 + RLTR22_Mur LTR ERVK 1 808 -1040 5 779 1155 176 83 12 chr6 25555461 25555703 -123961334 + RLTR22_Mur LTR ERVK 1590 1848 0 5 779 1001 214 106 75 chr6 25555755 25556103 -123960934 + Lx9 LINE L1 7279 7637 -7 5 779 4783 105 7 4 chr6 25556180 25556889 -123960148 + L1_Mus4 LINE L1 5910 6620 -16 5 779 351 0 0 0 chr6 25556889 25556928 -123960109 + (TAA)n Simple_repeat Simple_repeat 1 39 0 5 779 266 194 0 16 chr6 25557341 25557404 -123959633 + (TATG)n Simple_repeat Simple_repeat 1 62 0 5 779 1198 271 110 40 chr6 25557404 25557931 -123959106 - Lx9 LINE L1 -124 7520 6957 5 779 315 333 19 19 chr6 25558444 25558548 -123958489 - B1F SINE Alu 0 149 46 6 97 532 316 19 14 chr6 25558915 25559107 -123957930 + Lx8 LINE L1 6825 7022 -674 6 780 280 301 24 8 chr6 25559759 25559883 -123957154 + L1MA10 LINE L1 5571 5696 -604 6 780 459 125 0 0 chr6 25561224 25561296 -123955741 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 780 731 320 92 20 chr6 25561296 25561755 -123955282 + L1MA10 LINE L1 5796 6287 -47 6 780 883 277 75 53 chr6 25562397 25562981 -123954056 + L1MB8 LINE L1 5401 5997 -181 6 780 1556 191 127 100 chr6 25563011 25563482 -123953555 + L1_Mur2 LINE L1 579 1062 -6024 6 780 569 179 43 0 chr6 25563503 25563643 -123953394 - Lx3A LINE L1 -5 6976 6831 6 780 2816 66 53 0 chr6 25563643 25564021 -123953016 + Lx3A LINE L1 6412 6809 -172 6 780 18583 142 27 16 chr6 25564012 25567514 -123949523 + L1_Mur2 LINE L1 1120 4657 -1220 6 780 1814 106 31 22 chr6 25567514 25567833 -123949204 - RLTRETN_Mm LTR ERVK 0 322 1 6 780 18639 147 26 19 chr6 25567833 25574661 -123942376 - ETnERV2-int LTR ERVK -172 7234 8 6 780 1874 100 35 22 chr6 25574668 25574986 -123942051 - RLTRETN_Mm LTR ERVK 0 322 1 6 780 6469 133 62 14 chr6 25574986 25576312 -123940725 + Lx4B LINE L1 4650 6021 -1037 7 780 4435 163 50 12 chr6 25576312 25577144 -123939893 + Lx4B LINE L1 6192 7055 -3 7 780 207 380 50 59 chr6 25577424 25577645 -123939392 - L2 LINE L2 -575 2844 2626 7 780 308 274 99 40 chr6 25577653 25577805 -123939232 - L2 LINE L2 -1393 2026 1866 7 780 2076 139 3 9 chr6 25577988 25578308 -123938729 - ORR1A3 LTR MaLR -8 318 1 7 780 220 242 15 15 chr6 25578517 25578584 -123938453 + GA-rich Low_complexity Low_complexity 4 70 0 7 780 354 342 62 57 chr6 25578734 25578926 -123938111 + B3A SINE B2 6 198 0 7 780 271 362 70 7 chr6 25581007 25581045 -123935992 + MLT1I LTR MaLR 16 54 -357 7 780 459 0 0 0 chr6 25581045 25581096 -123935941 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 780 271 362 70 7 chr6 25581096 25581199 -123935838 + MLT1I LTR MaLR 55 165 -246 7 780 33306 66 5 6 chr6 25581623 25586596 -123930441 + L1Md_F3 LINE L1 622 5586 -297 7 780 8102 46 0 0 chr6 25586596 25587580 -123929457 + L1Md_F3 LINE L1 5587 6570 -14 7 780 22 56 0 0 chr6 25588441 25588477 -123928560 + AT_rich Low_complexity Low_complexity 1 36 0 7 780 1604 198 26 50 chr6 25589317 25589475 -123927562 + ORR1D1 LTR MaLR 1 157 -217 7 780 1146 48 7 0 chr6 25589475 25589620 -123927417 + B1_Mus2 SINE Alu 2 147 0 8 780 1604 198 26 50 chr6 25589620 25589844 -123927193 + ORR1D1 LTR MaLR 158 373 -1 7 780 1315 295 94 39 chr6 25590816 25591327 -123925710 - Lx6 LINE L1 -33 7017 6479 8 780 2135 250 112 18 chr6 25591318 25592012 -123925025 - Lx6 LINE L1 -676 6374 5587 8 780 2891 185 14 166 chr6 25592006 25592821 -123924216 + Lx6 LINE L1 4879 5569 -308 8 780 291 311 16 16 chr6 25593445 25593566 -123923471 + GA-rich Low_complexity Low_complexity 1 121 0 8 780 385 48 540 0 chr6 25593925 25594012 -123923025 - BGLII_Mus LTR ERVK 0 422 289 8 780 1407 61 0 15 chr6 25594021 25594221 -123922816 - L1_Mus2 LINE L1 0 6566 6370 8 780 1078 58 0 7 chr6 25594221 25594361 -123922676 + L1_Mus2 LINE L1 6212 6350 -216 8 780 1462 158 20 30 chr6 25594366 25594738 -123922299 - BGLII_Mus LTR ERVK -119 303 1 8 780 3085 171 30 5 chr6 25594839 25595408 -123921629 + RMER4B LTR ERVK 1 583 -2 8 780 269 323 76 45 chr6 25595538 25595787 -123921250 + MER102b DNA MER1_type 40 278 -63 8 780 225 347 40 18 chr6 25596786 25596923 -123920114 + MIRc SINE MIR 86 224 -38 8 780 21 0 0 0 chr6 25596949 25596970 -123920067 + AT_rich Low_complexity Low_complexity 1 21 0 8 780 377 158 0 0 chr6 25598389 25598446 -123918591 - RMER5 LTR ERV1 -13 521 465 8 780 4694 77 36 3 chr6 25598470 25599111 -123917926 - L1Md_F2 LINE L1 -14 6568 5907 9 780 2595 183 12 16 chr6 25599111 25599589 -123917448 - RMER5 LTR ERV1 -57 477 2 8 780 1249 262 52 46 chr6 25599944 25600292 -123916745 + ORR1E LTR MaLR 8 357 -2 9 780 258 265 132 0 chr6 25600297 25600380 -123916657 + MLT1G3 LTR MaLR 141 234 -361 9 780 537 316 65 31 chr6 25601462 25601785 -123915252 + L1MA4 LINE L1 5966 6299 -1 9 780 366 302 96 48 chr6 25601825 25601971 -123915066 + RSINE1 SINE B4 13 165 0 9 780 849 80 0 0 chr6 25602050 25602163 -123914874 - B2_Mm2 SINE B2 -81 114 2 9 780 278 409 49 64 chr6 25602216 25602480 -123914557 + B4 SINE B4 25 284 -8 9 780 287 96 19 0 chr6 25602533 25602585 -123914452 + (CATA)n Simple_repeat Simple_repeat 2 54 0 9 780 1233 96 0 0 chr6 25602735 25602913 -123914124 + (TTC)n Simple_repeat Simple_repeat 3 180 0 9 780 457 230 7 7 chr6 25602914 25603067 -123913970 + CT-rich Low_complexity Low_complexity 2 154 0 9 780 508 310 79 82 chr6 25603241 25603571 -123913466 - MLT1A0 LTR MaLR 0 365 37 1 780 482 366 72 48 chr6 25603566 25604025 -123913012 + MLT1D LTR MaLR 36 505 0 1 780 1119 305 52 43 chr6 25604435 25604918 -123912119 - Lx7 LINE L1 -288 7408 6922 1 780 1369 272 145 8 chr6 25604920 25605482 -123911555 + Lx7 LINE L1 6120 6800 -660 1 780 1858 133 12 81 chr6 25606684 25607028 -123910009 + ORR1A4 LTR MaLR 1 320 -9 1 780 372 94 0 0 chr6 25607404 25607457 -123909580 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 780 206 245 0 0 chr6 25607457 25607510 -123909527 + A-rich Low_complexity Low_complexity 56 108 0 1 780 210 118 0 0 chr6 25607982 25608016 -123909021 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 780 25 83 0 0 chr6 25608042 25608102 -123908935 + AT_rich Low_complexity Low_complexity 1 60 0 1 780 281 191 16 33 chr6 25608182 25608288 -123908749 + A-rich Low_complexity Low_complexity 1 104 0 1 780 278 338 60 7 chr6 25608311 25608460 -123908577 - Lx7 LINE L1 -363 7333 7177 1 780 207 100 0 0 chr6 25608491 25608521 -123908516 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1 780 4128 205 23 12 chr6 25608528 25609344 -123907693 - Lx6 LINE L1 -170 7290 6466 1 780 354 213 52 31 chr6 25609333 25609430 -123907607 + Lx7 LINE L1 6350 6448 -1248 1 780 267 31 0 0 chr6 25610837 25610869 -123906168 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 780 314 169 12 105 chr6 25611207 25611293 -123905744 - HAL1-3A_ME LINE L1 -806 2052 1975 1 780 367 255 64 20 chr6 25612935 25613139 -123903898 - L1MD LINE L1 -2889 3257 3045 1 780 370 311 6 0 chr6 25613276 25613453 -123903584 + L1ME2 LINE L1 3339 3516 -2630 1 780 499 155 21 0 chr6 25613473 25613570 -123903467 + Lx4A LINE L1 6958 7056 -2 1 780 358 306 69 43 chr6 25613997 25614274 -123902763 + L1ME2 LINE L1 5410 5693 -486 1 780 378 303 189 0 chr6 25614542 25614806 -123902231 + L1ME2 LINE L1 5762 6075 -89 1 780 280 402 94 33 chr6 25614970 25615397 -123901640 + L2b LINE L2 2920 3372 -3 1 780 1190 87 0 6 chr6 25616367 25616541 -123900496 + (GGAAA)n Simple_repeat Simple_repeat 4 176 0 1 780 405 0 0 0 chr6 25616689 25616734 -123900303 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 780 23 0 0 0 chr6 25618069 25618092 -123898945 + AT_rich Low_complexity Low_complexity 1 23 0 1 780 236 340 0 19 chr6 25619932 25620040 -123896997 + GA-rich Low_complexity Low_complexity 5 110 0 1 780 333 0 0 0 chr6 25620047 25620084 -123896953 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 780 311 193 0 0 chr6 25620198 25620255 -123896782 + HAL1-3A_ME LINE L1 1976 2032 -826 1 780 375 303 96 29 chr6 25620747 25620883 -123896154 + RSINE1 SINE B4 2 146 -19 1 780 288 0 0 0 chr6 25620922 25620954 -123896083 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 780 237 274 20 0 chr6 25621960 25622011 -123895026 - ID4 SINE ID -28 55 4 1 780 363 189 40 0 chr6 25622214 25622288 -123894749 - B4A SINE B4 0 292 216 1 780 3458 129 41 28 chr6 25622311 25622893 -123894144 - Lx LINE L1 -6 6648 6059 1 780 256 305 62 85 chr6 25623072 25623201 -123893836 + ORR1E LTR MaLR 64 189 -170 1 780 194 298 125 50 chr6 25623474 25623594 -123893443 - L2a LINE L2 -18 3408 3230 1 780 22 0 0 0 chr6 25623856 25623878 -123893159 + AT_rich Low_complexity Low_complexity 1 22 0 1 780 222 261 0 28 chr6 25626878 25626949 -123890088 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 1 780 308 310 84 25 chr6 25627332 25627451 -123889586 + Tigger12 DNA MER2_type 177 302 -1657 1 780 350 335 55 25 chr6 25628484 25628686 -123888351 + L1MA4 LINE L1 5090 5297 -846 1 780 358 277 208 45 chr6 25628716 25629226 -123887811 + L1MA4 LINE L1 5335 5927 -373 1 780 205 255 0 19 chr6 25629250 25629302 -123887735 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 780 622 345 39 17 chr6 25629562 25629742 -123887295 + B3 SINE B2 2 185 -31 1 780 1174 175 32 0 chr6 25632735 25632952 -123884085 + URR1B DNA MER1_type 1 224 -1 1 780 24 32 0 0 chr6 25632995 25633026 -123884011 + AT_rich Low_complexity Low_complexity 1 31 0 1 780 327 384 56 95 chr6 25635294 25635705 -123881332 + LTR16A LTR ERVL 31 425 -26 1 780 372 248 48 50 chr6 25636163 25636274 -123880763 + B1F1 SINE Alu 1 110 -39 1 780 537 270 0 0 chr6 25636189 25636304 -123880733 + ID_B1 SINE B4 104 218 -6 1 780 732 54 0 0 chr6 25637841 25637934 -123879103 + (CA)n Simple_repeat Simple_repeat 1 93 0 1 780 479 288 64 12 chr6 25640888 25641060 -123875977 + MLT1D LTR MaLR 23 203 -302 1 780 225 182 45 0 chr6 25641784 25641850 -123875187 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 780 23 54 0 0 chr6 25641850 25641887 -123875150 + AT_rich Low_complexity Low_complexity 1 37 0 1 780 1364 40 57 0 chr6 25642975 25643151 -123873886 - L1_Mus1 LINE L1 0 6567 6382 1 780 219 152 12 25 chr6 25643604 25643685 -123873352 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 780 379 309 8 60 chr6 25646415 25646549 -123870488 - ID_B1 SINE B4 -16 208 82 1 780 422 336 41 7 chr6 25646776 25646923 -123870114 + B3A SINE B2 1 152 -46 1 780 361 221 79 61 chr6 25647257 25647421 -123869616 + Lx5 LINE L1 6886 7052 -6 1 780 23 92 0 0 chr6 25647496 25647561 -123869476 + AT_rich Low_complexity Low_complexity 1 65 0 1 780 21 0 0 0 chr6 25647665 25647686 -123869351 + AT_rich Low_complexity Low_complexity 1 21 0 1 780 213 108 0 0 chr6 25647700 25647737 -123869300 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 780 603 340 0 0 chr6 25647745 25647901 -123869136 - B3A SINE B2 -42 156 1 1 780 241 290 99 10 chr6 25648502 25648603 -123868434 + Tigger13a DNA MER2_type 196 305 -466 1 780 796 296 104 22 chr6 25648792 25649062 -123867975 + B4A SINE B4 1 292 0 1 780 578 250 38 13 chr6 25651154 25651312 -123865725 + LTR86B1 LTR ERVL 26 187 -306 1 780 189 0 0 0 chr6 25651317 25651338 -123865699 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 780 332 307 69 21 chr6 25651970 25652145 -123864892 + MLT2B4 LTR ERVL 74 313 -404 1 780 934 186 177 0 chr6 25652395 25652610 -123864427 - Lx5 LINE L1 -8 7042 6790 1 780 199 268 106 35 chr6 25653303 25653388 -123863649 + L4 LINE RTE 1734 1824 -205 1 780 22 35 0 0 chr6 25653451 25653480 -123863557 + AT_rich Low_complexity Low_complexity 1 29 0 1 780 295 81 0 0 chr6 25653705 25653742 -123863295 - Lx3_Mus LINE L1 -608 6401 6365 1 780 3909 125 34 2 chr6 25653742 25654325 -123862712 + Lx3A LINE L1 6367 6968 -13 1 780 351 224 138 0 chr6 25654327 25654443 -123862594 - Lx7 LINE L1 -4 7692 7561 1 780 344 22 22 0 chr6 25654444 25654489 -123862548 + (TAAAA)n Simple_repeat Simple_repeat 3 48 0 1 780 7792 50 6 11 chr6 25654541 25655716 -123861321 + L1Md_F2 LINE L1 5394 6561 -21 1 780 369 75 0 0 chr6 25655716 25655769 -123861268 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 780 7792 49 7 13 chr6 25655769 25655782 -123861255 + L1Md_F2 LINE L1 6562 6575 -7 1 780 1615 258 31 57 chr6 25655778 25656268 -123860769 - Lx7 LINE L1 -233 7463 6987 1 780 963 277 72 69 chr6 25656608 25656632 -123860405 - L1MB2 LINE L1 -3 6168 6146 1 780 237 65 0 0 chr6 25656632 25656663 -123860374 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 780 963 277 72 69 chr6 25656663 25657301 -123859736 - L1MB2 LINE L1 -26 6145 5505 1 780 1040 111 123 0 chr6 25657729 25657900 -123859137 - B2_Mm2 SINE B2 -1 194 3 1 780 22 35 0 0 chr6 25658177 25658206 -123858831 + AT_rich Low_complexity Low_complexity 1 29 0 1 780 226 257 141 14 chr6 25659164 25659235 -123857802 - B2_Mm2 SINE B2 -112 83 4 1 780 1408 167 77 15 chr6 25660979 25661242 -123855795 - RLTR11A LTR ERVK 0 528 262 1 780 1179 59 0 0 chr6 25661242 25661394 -123855643 + (TTCTCC)n Simple_repeat Simple_repeat 3 154 0 1 780 1408 167 77 15 chr6 25661394 25661470 -123855567 - RLTR11A LTR ERVK -267 261 169 1 780 407 145 0 12 chr6 25661472 25661518 -123855519 + polypyrimidine Low_complexity Low_complexity 40 85 0 1 780 1033 118 6 6 chr6 25661518 25661697 -123855340 + (TCC)n Simple_repeat Simple_repeat 1 179 0 1 780 407 145 0 12 chr6 25661697 25661734 -123855303 + polypyrimidine Low_complexity Low_complexity 3 39 0 1 780 1043 214 53 50 chr6 25661736 25662027 -123855010 - RLTR11A LTR ERVK -296 281 1 1 780 253 282 64 0 chr6 25662034 25662112 -123854925 + PB1D9 SINE Alu 38 120 0 1 780 231 294 12 12 chr6 25662266 25662352 -123854685 + A-rich Low_complexity Low_complexity 5 90 0 1 780 207 0 0 0 chr6 25662748 25662771 -123854266 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 1 780 3658 23 0 0 chr6 25663181 25663610 -123853427 + L1Md_T LINE L1 5158 5586 -297 1 780 8382 36 0 0 chr6 25663610 25664606 -123852431 + L1Md_T LINE L1 5587 6582 0 1 780 198 0 0 0 chr6 25664961 25664983 -123852054 + (A)n Simple_repeat Simple_repeat 1 22 0 1 780 234 118 0 0 chr6 25666267 25666301 -123850736 - L1MA5 LINE L1 -70 6230 6197 1 780 1437 243 61 12 chr6 25666619 25666964 -123850073 + MTD LTR MaLR 49 410 -9 1 780 408 88 0 0 chr6 25667036 25667093 -123849944 + (ATG)n Simple_repeat Simple_repeat 2 58 0 1 780 306 354 0 38 chr6 25667698 25667883 -123849154 + Lx9 LINE L1 7256 7433 -211 1 780 420 20 0 0 chr6 25667939 25667988 -123849049 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 780 343 265 74 114 chr6 25668436 25668516 -123848521 + RSINE1 SINE B4 2 74 -91 1 780 1006 267 75 9 chr6 25668516 25668863 -123848174 + ORR1D2 LTR MaLR 1 370 0 1 780 343 265 74 114 chr6 25668863 25668931 -123848106 + RSINE1 SINE B4 75 144 -21 1 780 543 209 52 11 chr6 25669257 25669431 -123847606 + Lx7 LINE L1 7516 7696 0 1 780 357 268 0 35 chr6 25671755 25671840 -123845197 - PB1D10 SINE Alu 0 117 36 1 780 284 306 90 0 chr6 25671884 25671995 -123845042 - RMER15 LTR ERVL -36 539 419 1 780 422 331 124 22 chr6 25672068 25672253 -123844784 + B4A SINE B4 88 291 -1 1 780 283 296 58 70 chr6 25672312 25672657 -123844380 - L1MEf LINE L1 -4532 1668 1328 1 780 402 173 0 0 chr6 25672731 25672806 -123844231 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 1 780 1452 285 13 18 chr6 25672893 25673290 -123843747 - Lx5 LINE L1 -3 7047 6653 1 780 6172 31 0 0 chr6 25673300 25674017 -123843020 - L1Md_A LINE L1 -1 6581 5865 2 780 181 154 58 0 chr6 25674282 25674334 -123842703 + CT-rich Low_complexity Low_complexity 5 59 0 2 780 269 299 13 0 chr6 25674338 25674415 -123842622 - ID4 SINE ID -4 79 2 2 780 270 265 44 13 chr6 25674484 25674663 -123842374 - L1MEf LINE L1 -5201 893 711 1 780 1840 149 80 58 chr6 25674697 25675111 -123841926 - Lx2B LINE L1 -292 6708 6286 2 780 743 184 13 20 chr6 25675727 25675877 -123841160 + B1_Mur3 SINE Alu 1 149 0 2 780 560 220 56 14 chr6 25676414 25676557 -123840480 + B1F SINE Alu 1 149 0 2 780 253 293 80 144 chr6 25676843 25677142 -123839895 - MTEa LTR MaLR -2 377 80 2 780 21 36 0 0 chr6 25677539 25677567 -123839470 + AT_rich Low_complexity Low_complexity 1 28 0 2 780 990 54 0 0 chr6 25677833 25677962 -123839075 - L1_Mus2 LINE L1 0 6566 6438 2 780 197 236 104 82 chr6 25678733 25678867 -123838170 - L2 LINE L2 -361 3058 2922 2 780 246 270 79 84 chr6 25678928 25679106 -123837931 - L2 LINE L2 -695 2724 2548 2 780 227 254 119 0 chr6 25680143 25680210 -123836827 + RLTR19C LTR ERVK 34 108 -398 2 780 225 328 29 88 chr6 25680312 25680449 -123836588 - Kanga1 DNA Tc2 -448 1297 1169 2 780 442 67 13 13 chr6 25680899 25680975 -123836062 + (CAAAA)n Simple_repeat Simple_repeat 2 77 0 2 780 15781 79 3 18 chr6 25682455 25684795 -123832242 + L1_Mur1 LINE L1 3371 5674 -212 2 780 316 118 29 0 chr6 25684796 25684864 -123832173 + Lx3_Mus LINE L1 6931 7000 -9 2 780 23 0 0 0 chr6 25684878 25684901 -123832136 + AT_rich Low_complexity Low_complexity 1 23 0 2 780 1994 182 56 16 chr6 25685349 25685723 -123831314 + ORR1B1 LTR MaLR 1 389 -5 2 780 1588 294 67 11 chr6 25685730 25686339 -123830698 - Lx9 LINE L1 -696 6948 6306 2 780 882 264 124 55 chr6 25686393 25686885 -123830152 + Lx9 LINE L1 6945 7470 -174 2 780 1528 189 57 72 chr6 25686915 25687302 -123829735 + RLTR14 LTR ERV1 2 382 0 2 780 342 0 0 0 chr6 25688459 25688497 -123828540 + (T)n Simple_repeat Simple_repeat 1 38 0 2 780 404 289 82 103 chr6 25688501 25688783 -123828254 - ORR1E LTR MaLR -4 355 80 2 780 331 188 12 12 chr6 25688956 25689037 -123828000 + L1_Mur3 LINE L1 1084 1164 -6564 2 780 1153 51 0 48 chr6 25689037 25689203 -123827834 + L1_Mus1 LINE L1 6410 6567 0 2 780 279 71 0 0 chr6 25689343 25689385 -123827652 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 2 780 3296 208 40 18 chr6 25689409 25689854 -123827183 + L1_Mur3 LINE L1 1333 1778 -4102 2 780 1572 77 4 13 chr6 25689854 25690079 -123826958 - L1Md_F2 LINE L1 -12 6570 6348 2 97 3296 208 40 18 chr6 25690079 25690558 -123826479 + L1_Mur3 LINE L1 1779 2277 -3603 2 781 202 206 0 31 chr6 25690806 25690871 -123826166 + GA-rich Low_complexity Low_complexity 3 65 0 2 781 557 280 14 20 chr6 25690879 25691025 -123826012 - MT2A LTR ERVL -77 456 312 2 781 1536 179 30 32 chr6 25691025 25691394 -123825643 + L1_Mur3 LINE L1 4913 5280 -600 2 781 1847 219 35 30 chr6 25691490 25691817 -123825220 + Lx7 LINE L1 6474 6804 -892 2 781 831 254 145 109 chr6 25691817 25692395 -123824642 - MT2B LTR ERVL -2 599 1 2 781 1847 219 35 30 chr6 25692395 25692529 -123824508 + Lx7 LINE L1 6805 6937 -759 2 781 714 246 134 5 chr6 25692542 25692758 -123824279 - Lx6 LINE L1 -392 7068 6825 2 781 387 241 44 15 chr6 25692755 25692890 -123824147 + Lx6 LINE L1 7322 7460 0 2 781 607 285 59 10 chr6 25692932 25693134 -123823903 - Lx6 LINE L1 -653 6807 6596 2 781 1485 268 73 32 chr6 25693142 25693608 -123823429 + Lx7 LINE L1 6922 7406 -290 2 781 183 42 0 0 chr6 25694242 25694266 -123822771 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 781 1161 74 0 0 chr6 25695649 25695853 -123821184 + (GA)n Simple_repeat Simple_repeat 1 204 0 2 781 1011 228 5 5 chr6 25696047 25696259 -123820778 + B3 SINE B2 1 212 -4 2 781 25 0 0 0 chr6 25696666 25696691 -123820346 + AT_rich Low_complexity Low_complexity 1 25 0 2 781 1170 43 31 6 chr6 25696701 25696864 -123820173 - L1Md_F3 LINE L1 0 6584 6418 2 781 3660 44 0 0 chr6 25696864 25697323 -123819714 + L1Md_F3 LINE L1 6014 6472 -110 2 781 186 302 156 16 chr6 25697323 25697387 -123819650 + L2b LINE L2 3303 3375 0 2 781 253 363 161 10 chr6 25697532 25697724 -123819313 + MER77 LTR ERVL 136 356 -251 2 781 22 35 0 0 chr6 25698034 25698063 -123818974 + AT_rich Low_complexity Low_complexity 1 29 0 2 781 32 26 0 0 chr6 25698219 25698258 -123818779 + AT_rich Low_complexity Low_complexity 1 39 0 2 781 22 56 0 0 chr6 25700162 25700198 -123816839 + AT_rich Low_complexity Low_complexity 1 36 0 2 781 23 0 0 0 chr6 25700236 25700259 -123816778 + AT_rich Low_complexity Low_complexity 1 23 0 2 781 1747 186 25 30 chr6 25700337 25700703 -123816334 + ORR1D1 LTR MaLR 1 364 -10 2 781 356 380 73 0 chr6 25702047 25702226 -123814811 - Tigger5 DNA MER2_type -2168 238 47 2 781 180 0 0 0 chr6 25702500 25702520 -123814517 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2 781 267 103 0 0 chr6 25702650 25702689 -123814348 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2 781 361 302 74 80 chr6 25703442 25703618 -123813419 + B3A SINE B2 17 191 -7 2 781 1162 58 14 136 chr6 25703638 25703859 -123813178 + Lx3_Mus LINE L1 6816 7009 0 2 781 5137 108 39 15 chr6 25704355 25705161 -123811876 + Lx3A LINE L1 6142 6966 -15 2 781 621 0 0 0 chr6 25705161 25705230 -123811807 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 2 781 453 81 0 0 chr6 25705233 25705295 -123811742 + (GGAGA)n Simple_repeat Simple_repeat 1 62 0 2 781 204 250 0 0 chr6 25706042 25706106 -123810931 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 2 781 266 0 29 0 chr6 25706775 25706809 -123810228 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 2 781 216 0 0 0 chr6 25707099 25707123 -123809914 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 781 28 48 0 0 chr6 25708221 25708263 -123808774 + AT_rich Low_complexity Low_complexity 1 42 0 2 781 476 259 67 63 chr6 25709607 25710089 -123806948 + L1_Mur3 LINE L1 907 1399 -4481 2 781 1125 164 125 103 chr6 25710095 25710415 -123806622 + ORR1B1 LTR MaLR 1 327 -2 2 781 9263 149 30 151 chr6 25710417 25712952 -123804085 + ORR1B1-int LTR MaLR 1 1963 0 2 781 675 210 83 24 chr6 25712952 25713205 -123803832 + L1_Mur3 LINE L1 2869 3129 -2748 2 781 1295 295 20 11 chr6 25713309 25713768 -123803269 + Lx7 LINE L1 6812 7274 -422 2 781 223 227 10 49 chr6 25713794 25713896 -123803141 + T-rich Low_complexity Low_complexity 2 99 0 2 781 342 91 0 0 chr6 25713898 25713953 -123803084 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 781 21 0 0 0 chr6 25715259 25715280 -123801757 + AT_rich Low_complexity Low_complexity 1 21 0 2 781 203 302 16 0 chr6 25715519 25715582 -123801455 + GA-rich Low_complexity Low_complexity 5 68 0 2 781 308 155 32 65 chr6 25719028 25719090 -123797947 + ORR1B2-int LTR MaLR 230 289 -1220 2 781 622 295 5 0 chr6 25719090 25719283 -123797754 + Lx9 LINE L1 7206 7399 -245 2 781 1906 183 16 11 chr6 25719283 25719648 -123797389 + ORR1B2 LTR MaLR 1 367 0 2 781 1659 197 35 6 chr6 25719648 25719965 -123797072 + ORR1B2-int LTR MaLR 1 326 -1183 2 781 3229 216 104 4 chr6 25719962 25720771 -123796266 + ORR1B2-int LTR MaLR 620 1509 0 2 781 1677 154 86 9 chr6 25720778 25721105 -123795932 + ORR1B2 LTR MaLR 8 359 -8 2 781 245 212 37 12 chr6 25721109 25721190 -123795847 + Lx9 LINE L1 7395 7477 -167 2 781 243 0 0 0 chr6 25721192 25721219 -123795818 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 781 249 198 33 55 chr6 25721225 25721316 -123795721 + Lx9 LINE L1 7535 7623 -21 2 781 441 347 21 0 chr6 25722215 25722408 -123794629 + B3A SINE B2 2 198 0 2 781 636 279 33 155 chr6 25722408 25722800 -123794237 + MTD LTR MaLR 75 405 -14 2 781 684 326 45 39 chr6 25723418 25723753 -123793284 + Lx8 LINE L1 7136 7472 -1 2 781 1178 50 0 0 chr6 25724073 25724213 -123792824 - B1_Mus2 SINE Alu -7 140 1 2 781 1142 62 119 0 chr6 25724703 25724863 -123792174 + L1_Mus1 LINE L1 6388 6566 -1 2 781 708 105 9 19 chr6 25724975 25725082 -123791955 - B1_Mus2 SINE Alu -1 146 41 2 781 258 153 82 14 chr6 25725083 25725156 -123791881 + (CCTG)n Simple_repeat Simple_repeat 2 79 0 2 781 343 130 0 0 chr6 25725158 25725212 -123791825 - B1_Mus1 SINE Alu -93 55 2 2 781 22 0 0 0 chr6 25727434 25727456 -123789581 + AT_rich Low_complexity Low_complexity 1 22 0 2 781 23 0 0 0 chr6 25728485 25728508 -123788529 + AT_rich Low_complexity Low_complexity 1 23 0 2 781 25 31 0 0 chr6 25729284 25729316 -123787721 + AT_rich Low_complexity Low_complexity 1 32 0 2 781 234 340 0 0 chr6 25729340 25729387 -123787650 + ID4 SINE ID 26 72 -11 2 781 732 23 0 0 chr6 25729393 25729479 -123787558 + (GGGA)n Simple_repeat Simple_repeat 3 88 0 2 781 411 63 0 0 chr6 25729902 25729965 -123787072 + Lx2 LINE L1 6934 6996 -1 2 781 2993 270 89 91 chr6 25730089 25731236 -123785801 + Lx5 LINE L1 5748 6865 -185 2 781 2764 47 35 0 chr6 25731236 25731578 -123785459 + IAPEY2_LTR LTR ERVK 1 354 -3 2 781 2993 270 89 91 chr6 25731578 25731717 -123785320 + Lx5 LINE L1 6866 7032 -18 2 781 1173 91 209 0 chr6 25731753 25731940 -123785097 + URR1A DNA MER1_type 1 226 0 2 781 1229 34 0 0 chr6 25732301 25732448 -123784589 + B1_Mm SINE Alu 1 147 0 2 781 374 281 29 19 chr6 25732605 25732710 -123784327 + ORR1B2 LTR MaLR 141 246 -121 2 781 3831 172 153 2 chr6 25732712 25733223 -123783814 - L1_Mur3 LINE L1 -3521 2359 1715 2 781 261 0 0 0 chr6 25733223 25733252 -123783785 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 781 3831 216 108 33 chr6 25733252 25734323 -123782714 - L1_Mur3 LINE L1 -4166 1714 619 2 781 231 114 0 0 chr6 25734597 25734632 -123782405 + (A)n Simple_repeat Simple_repeat 1 35 0 2 781 208 384 23 99 chr6 25735619 25735882 -123781155 - MIR SINE MIR -2 260 18 2 781 1188 167 5 0 chr6 25736142 25736334 -123780703 + MTC LTR MaLR 203 395 -26 2 781 3301 108 124 6 chr6 25736624 25737146 -123779891 - MT2B2 LTR ERVL 0 584 1 2 781 704 233 67 106 chr6 25738466 25738749 -123778288 + B4 SINE B4 2 273 -19 2 781 1254 98 10 45 chr6 25740122 25740324 -123776713 - B2_Mm2 SINE B2 0 195 1 2 781 230 279 0 14 chr6 25740330 25740399 -123776638 - L1M4c LINE L1 -585 5963 5896 2 781 14570 93 9 2 chr6 25740400 25741982 -123775055 + L1_Mus2 LINE L1 3799 5392 -491 2 781 216 0 0 0 chr6 25741982 25742006 -123775031 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 781 14570 70 27 2 chr6 25742006 25743149 -123773888 + L1_Mus2 LINE L1 5393 6566 0 2 781 572 292 122 47 chr6 25743157 25743732 -123773305 - L1M4c LINE L1 -1524 4852 4235 2 781 311 306 64 27 chr6 25743778 25743966 -123773071 - L1M4c LINE L1 -4124 2260 2066 2 781 1068 66 0 0 chr6 25744203 25744339 -123772698 + B1_Mm SINE Alu 5 140 -7 2 781 292 22 22 22 chr6 25744340 25744386 -123772651 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 2 781 512 81 23 0 chr6 25744387 25744473 -123772564 + L1_Mus4 LINE L1 6544 6631 -5 2 781 7576 70 8 4 chr6 25745364 25746981 -123770056 - L1Md_F2 LINE L1 -14 6568 4942 3 781 583 327 21 13 chr6 25747210 25747398 -123769639 + B3A SINE B2 8 196 -2 3 781 431 300 43 7 chr6 25748123 25748264 -123768773 + B3A SINE B2 25 170 -28 3 781 369 0 0 0 chr6 25748273 25748314 -123768723 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 781 231 235 250 9 chr6 25748575 25748691 -123768346 + LTR48 LTR ERV1 601 744 -43 3 781 396 0 0 0 chr6 25749063 25749107 -123767930 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 781 292 288 92 76 chr6 25749735 25749919 -123767118 + B3 SINE B2 2 188 -28 3 781 393 310 104 63 chr6 25750254 25750523 -123766514 + MT2A LTR ERVL 167 446 -87 3 781 2320 48 70 0 chr6 25750600 25750916 -123766121 + ORR1A0 LTR MaLR 1 338 -8 3 781 434 236 75 9 chr6 25750977 25751084 -123765953 + RSINE1 SINE B4 16 129 -36 3 781 441 273 88 61 chr6 25751093 25751167 -123765870 - L1M4 LINE L1 -2112 4034 3955 3 781 2408 103 49 42 chr6 25751167 25751573 -123765464 - RLTR9E LTR ERVK 0 409 1 3 781 441 273 88 61 chr6 25751573 25751794 -123765243 - L1M4 LINE L1 -2192 3954 3731 3 781 30 27 0 0 chr6 25752133 25752170 -123764867 + AT_rich Low_complexity Low_complexity 1 37 0 3 781 604 228 169 48 chr6 25752595 25752784 -123764253 + B3 SINE B2 2 213 -3 3 781 180 111 0 0 chr6 25752788 25752815 -123764222 + (TAA)n Simple_repeat Simple_repeat 3 29 0 3 781 22 0 0 0 chr6 25752868 25752890 -123764147 + AT_rich Low_complexity Low_complexity 1 22 0 3 781 314 298 217 36 chr6 25753018 25753546 -123763491 + L1M4 LINE L1 3132 3754 -2386 3 781 190 229 48 32 chr6 25753791 25753854 -123763183 - MIRc SINE MIR -22 246 183 3 781 260 276 69 0 chr6 25753922 25754009 -123763028 - L1MC LINE L1 -2033 4113 4021 3 781 278 317 107 8 chr6 25755016 25755137 -123761900 + L2a LINE L2 3256 3388 -38 3 781 1110 95 0 0 chr6 25755586 25755765 -123761272 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 781 297 0 0 0 chr6 25756135 25756168 -123760869 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 781 180 0 0 0 chr6 25756576 25756596 -123760441 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 781 209 87 0 61 chr6 25757560 25757609 -123759428 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 3 781 448 368 26 2 chr6 25757832 25758045 -123758992 + MIR SINE MIR 32 257 -11 3 781 25 31 0 0 chr6 25760819 25760851 -123756186 + AT_rich Low_complexity Low_complexity 1 32 0 3 781 411 73 0 0 chr6 25760964 25761019 -123756018 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 781 811 310 25 15 chr6 25761131 25761447 -123755590 - Lx9 LINE L1 -302 7342 6892 3 781 31 58 0 0 chr6 25761782 25761834 -123755203 + AT_rich Low_complexity Low_complexity 1 52 0 3 781 222 37 0 0 chr6 25763066 25763093 -123753944 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 781 912 308 25 48 chr6 25764462 25764858 -123752179 - Lx9 LINE L1 -346 7298 6912 3 781 21 0 0 0 chr6 25764946 25764967 -123752070 + AT_rich Low_complexity Low_complexity 1 21 0 3 781 382 255 10 50 chr6 25765054 25765153 -123751884 - PB1 SINE Alu -18 109 15 3 781 352 315 153 30 chr6 25767815 25768143 -123748894 + MLT1A0 LTR MaLR 1 467 0 3 781 192 261 155 50 chr6 25768255 25768416 -123748621 + L2c LINE L2 2661 2838 -581 3 781 204 276 152 10 chr6 25768885 25768984 -123748053 + L2c LINE L2 3275 3387 0 3 781 1420 268 45 41 chr6 25769302 25769855 -123747182 - L1M2 LINE L1 -2029 4114 3536 3 781 351 228 0 0 chr6 25770687 25770779 -123746258 + GA-rich Low_complexity Low_complexity 2 93 0 3 781 1346 56 0 11 chr6 25772251 25772432 -123744605 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 3 781 402 21 0 0 chr6 25772432 25772479 -123744558 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 3 781 1988 119 80 3 chr6 25772668 25772870 -123744167 - BGLII_Mus LTR ERVK 0 422 217 3 781 468 0 0 0 chr6 25772870 25772922 -123744115 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 781 1988 119 80 3 chr6 25772922 25773056 -123743981 - BGLII_Mus LTR ERVK -206 216 60 3 781 828 201 7 0 chr6 25773071 25773210 -123743827 - B1_Mus1 SINE Alu -3 145 6 3 781 315 0 0 0 chr6 25773223 25773258 -123743779 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 781 1594 181 101 9 chr6 25773390 25773736 -123743301 - ORR1C1 LTR MaLR 0 378 1 3 781 351 333 63 21 chr6 25773761 25773951 -123743086 - MIR SINE MIR -34 228 31 3 781 336 274 34 15 chr6 25775746 25775907 -123741130 + GA-rich Low_complexity Low_complexity 1 164 0 3 781 380 267 13 32 chr6 25776012 25776107 -123740930 - MLT2C2 LTR ERVL -256 208 121 3 781 884 62 148 0 chr6 25776107 25776235 -123740802 + B1_Mus1 SINE Alu 2 148 0 3 781 378 306 34 166 chr6 25776235 25776378 -123740659 - MLT2C2 LTR ERVL -434 122 4 3 781 333 296 142 7 chr6 25776732 25776962 -123740075 - Lx7 LINE L1 -340 7356 7109 3 781 522 0 0 0 chr6 25777071 25777129 -123739908 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 3 781 562 180 129 16 chr6 25777147 25777271 -123739766 - B1_Mur3 SINE Alu -11 138 1 3 781 456 19 0 0 chr6 25777857 25777910 -123739127 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 781 366 143 0 0 chr6 25778769 25778846 -123738191 + (T)n Simple_repeat Simple_repeat 1 77 0 3 781 1229 41 0 0 chr6 25778850 25778997 -123738040 - B1_Mm SINE Alu 0 147 1 3 781 213 329 14 0 chr6 25779516 25779586 -123737451 - L2c LINE L2 -59 3328 3258 3 781 229 326 65 45 chr6 25779709 25779908 -123737129 - L2a LINE L2 -2 3424 3222 3 781 360 233 21 62 chr6 25780448 25780544 -123736493 + RLTR19-int LTR ERVK 1689 1780 -3742 3 781 258 262 16 0 chr6 25780634 25780695 -123736342 + RLTR19-int LTR ERVK 1797 1858 -3664 3 781 23 33 0 0 chr6 25780822 25780852 -123736185 + AT_rich Low_complexity Low_complexity 1 30 0 3 781 1026 194 42 46 chr6 25781003 25781263 -123735774 + RLTR19-int LTR ERVK 1870 2128 -3394 3 781 1309 282 104 115 chr6 25781248 25782953 -123734084 + RLTR19-int LTR ERVK 2330 4016 -2121 3 781 396 237 0 0 chr6 25783204 25783280 -123733757 + RLTR19-int LTR ERVK 4244 4319 -1818 3 781 267 263 29 111 chr6 25783359 25783530 -123733507 + RMER10A LTR ERVL 124 280 -162 3 781 1060 157 35 0 chr6 25783741 25783939 -123733098 - Lx LINE L1 -6 6648 6444 3 781 617 115 0 0 chr6 25783959 25784046 -123732991 + Lx LINE L1 6247 6333 -321 3 781 3757 121 108 44 chr6 25784160 25784870 -123732167 + RMER6A LTR ERVK 1 756 0 3 781 3155 51 5 13 chr6 25784873 25785270 -123731767 + MTA_Mm LTR MaLR 1 394 -2 3 781 205 269 19 0 chr6 25786766 25786818 -123730219 + CT-rich Low_complexity Low_complexity 109 161 0 3 781 1104 124 0 0 chr6 25787087 25787265 -123729772 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 3 781 196 114 0 64 chr6 25787265 25787312 -123729725 + G-rich Low_complexity Low_complexity 2 45 0 3 781 381 325 0 17 chr6 25787391 25787510 -123729527 + MLT1C LTR MaLR 290 406 -61 3 781 728 325 110 13 chr6 25789195 25789494 -123727543 + MER54B LTR ERVL 464 791 -2 3 781 1104 88 0 0 chr6 25789504 25789651 -123727386 + B1_Mus2 SINE Alu 1 147 0 3 781 384 22 0 0 chr6 25789788 25789833 -123727204 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 781 638 36 24 0 chr6 25790771 25790855 -123726182 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 3 781 1577 201 29 78 chr6 25791399 25791783 -123725254 - ORR1B2 LTR MaLR 0 367 3 3 781 1065 102 78 0 chr6 25793213 25793379 -123723658 - B2_Mm1t SINE B2 -14 179 1 3 781 21 0 0 0 chr6 25794293 25794314 -123722723 + AT_rich Low_complexity Low_complexity 1 21 0 3 781 226 310 100 50 chr6 25794788 25795029 -123722008 + MER63D DNA AcHobo 2 254 -807 3 781 619 297 0 13 chr6 25795345 25795495 -123721542 - ID_B1 SINE B4 0 224 77 3 781 1055 288 73 8 chr6 25795574 25795931 -123721106 + Lx7 LINE L1 6834 7213 -483 3 781 9468 102 7 13 chr6 25796164 25797703 -123719334 - Lx3A LINE L1 -3 6978 5451 3 781 235 75 75 0 chr6 25799583 25799636 -123717401 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 3 781 400 205 0 13 chr6 25800514 25800593 -123716444 - B2_Mm2 SINE B2 -98 97 20 3 781 1536 240 75 57 chr6 25800595 25801019 -123716018 + Lx5 LINE L1 6612 7043 -7 3 781 2795 20 23 0 chr6 25802104 25802446 -123714591 - L1Md_T LINE L1 -360 5523 5174 3 781 877 20 0 0 chr6 25802418 25802517 -123714520 + L1Md_T LINE L1 5488 5586 -297 3 781 8351 36 0 0 chr6 25802517 25803512 -123713525 + L1Md_T LINE L1 5587 6581 -1 3 781 315 0 0 0 chr6 25803988 25804023 -123713014 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 781 470 301 115 0 chr6 25804042 25804155 -123712882 - RSINE1 SINE B4 -35 130 5 3 781 2274 84 11 43 chr6 25804171 25804521 -123712516 - L1Md_F2 LINE L1 -14 6568 6230 3 781 203 61 30 0 chr6 25806212 25806245 -123710792 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 781 282 29 0 0 chr6 25807591 25807626 -123709411 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 781 243 0 0 0 chr6 25807859 25807886 -123709151 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 781 4251 203 21 32 chr6 25808889 25809739 -123707298 - Lx5 LINE L1 -1 7049 6209 3 781 6254 114 30 76 chr6 25811092 25811511 -123705526 + Lx2 LINE L1 5912 6258 -739 3 781 408 40 0 0 chr6 25811511 25811561 -123705476 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 781 6254 114 30 76 chr6 25811561 25812280 -123704757 + Lx2 LINE L1 6259 6997 0 3 781 356 318 70 48 chr6 25812606 25812834 -123704203 - L1MC LINE L1 -2121 5761 5529 3 781 1633 327 104 25 chr6 25813149 25814025 -123703012 - Lx8 LINE L1 -20 7453 6509 3 781 350 330 21 68 chr6 25814304 25814538 -123702499 + L1MEg LINE L1 314 536 -5548 3 781 24 0 0 0 chr6 25815542 25815566 -123701471 + AT_rich Low_complexity Low_complexity 1 24 0 3 781 2145 107 19 19 chr6 25816275 25816599 -123700438 + Lx2 LINE L1 6667 6990 -7 3 781 621 0 0 0 chr6 25816601 25816670 -123700367 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 781 279 79 0 0 chr6 25817319 25817357 -123699680 + (TAA)n Simple_repeat Simple_repeat 1 38 0 3 781 232 319 66 92 chr6 25818419 25818571 -123698466 - B3A SINE B2 -1 215 68 3 781 445 185 51 16 chr6 25818563 25818671 -123698366 + B2_Mm2 SINE B2 51 175 -18 3 781 281 26 26 0 chr6 25818671 25818709 -123698328 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 781 389 232 151 59 chr6 25818709 25818725 -123698312 + B2_Mm1t SINE B2 176 188 -5 3 781 772 187 132 12 chr6 25819004 25819193 -123697844 + MTD LTR MaLR 208 405 -14 4 781 288 0 0 0 chr6 25819804 25819836 -123697201 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 781 1522 171 0 4 chr6 25819899 25820169 -123696868 - L1_Mus4 LINE L1 -6 6630 6362 4 781 4121 36 0 10 chr6 25820166 25820668 -123696369 - L1Md_F3 LINE L1 0 6584 6088 4 781 307 57 94 0 chr6 25820675 25820728 -123696309 - Lx2 LINE L1 0 6997 6940 4 781 606 263 187 16 chr6 25820728 25821085 -123695952 - L1VL4 LINE L1 -5636 786 335 4 782 265 212 15 137 chr6 25821963 25822094 -123694943 - L1MEg LINE L1 -4663 1421 1307 4 782 447 359 80 57 chr6 25822113 25822765 -123694272 - L1MEg LINE L1 -4798 1286 620 4 782 1062 90 14 7 chr6 25822954 25823099 -123693938 - B1_Mus2 SINE Alu 0 147 2 4 782 25 31 0 0 chr6 25823822 25823854 -123693183 + AT_rich Low_complexity Low_complexity 1 32 0 4 782 250 246 15 15 chr6 25824039 25824105 -123692932 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 782 188 35 35 0 chr6 25824157 25824186 -123692851 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 782 412 73 0 0 chr6 25824190 25824245 -123692792 - B1_Mm SINE Alu 0 147 93 4 782 918 207 10 5 chr6 25824229 25824423 -123692614 + RMER19B LTR ERVK 702 896 -6 4 782 180 254 114 43 chr6 25825329 25825399 -123691638 + L2 LINE L2 1607 1681 -1738 4 782 420 361 32 0 chr6 25826250 25826408 -123690629 + RSINE1 SINE B4 3 165 0 4 782 24 67 0 0 chr6 25826980 25827025 -123690012 + AT_rich Low_complexity Low_complexity 1 45 0 4 782 22 0 0 0 chr6 25827606 25827628 -123689409 + AT_rich Low_complexity Low_complexity 1 22 0 4 782 258 291 24 64 chr6 25828244 25828369 -123688668 + MER104 DNA Tc2 36 155 -26 4 782 1327 131 18 9 chr6 25828697 25828920 -123688117 - L1Md_F2 LINE L1 -3 6579 6355 4 782 4772 40 0 0 chr6 25828984 25829599 -123687438 + L1Md_T LINE L1 6012 6582 0 4 782 431 223 31 31 chr6 25829750 25829912 -123687125 + Lx9 LINE L1 7480 7641 -3 4 782 230 214 0 0 chr6 25830325 25830367 -123686670 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 782 3085 82 9 14 chr6 25830838 25831281 -123685756 - L1_Mus3 LINE L1 -4 6634 6194 4 782 192 40 0 0 chr6 25831606 25831631 -123685406 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 782 249 109 0 0 chr6 25832372 25832418 -123684619 + (A)n Simple_repeat Simple_repeat 1 46 0 4 782 201 74 0 0 chr6 25832524 25832551 -123684486 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 4 782 4351 100 11 0 chr6 25832638 25833256 -123683781 - Lx LINE L1 -6 6648 6024 4 782 294 187 213 0 chr6 25833268 25833343 -123683694 + Lx2 LINE L1 6258 6348 -649 4 782 14341 29 26 26 chr6 25833338 25834985 -123682052 - L1Md_T LINE L1 -1 6581 4891 4 782 225 183 46 77 chr6 25834985 25835050 -123681987 + RMER20A LTR ERVK 186 248 -268 4 782 14341 29 26 26 chr6 25835050 25835852 -123681185 - L1Md_T LINE L1 -1 4890 4066 4 782 20148 34 0 3 chr6 25835841 25838369 -123678668 + Lx2B LINE L1 1637 6423 -577 4 782 675 253 14 0 chr6 25838679 25838825 -123678212 - B1_Mus1 SINE Alu 0 148 1 4 782 328 221 44 0 chr6 25839843 25839911 -123677126 + HAL1-3A_ME LINE L1 1979 2049 -809 4 782 233 109 22 0 chr6 25840697 25840743 -123676294 + (TTTTTG)n Simple_repeat Simple_repeat 3 49 0 4 782 1755 210 27 3 chr6 25840759 25841127 -123675910 - ORR1C1 LTR MaLR 0 378 2 4 782 359 250 42 56 chr6 25842055 25842199 -123674838 - RLTR9B LTR ERVK 0 437 296 4 782 367 132 11 11 chr6 25842224 25842316 -123674721 + (CAAA)n Simple_repeat Simple_repeat 2 93 0 4 782 209 204 0 69 chr6 25844077 25844135 -123672902 + T-rich Low_complexity Low_complexity 6 59 0 4 782 542 294 86 0 chr6 25844557 25844744 -123672293 - B3 SINE B2 -12 204 2 4 782 709 239 0 0 chr6 25844772 25844906 -123672131 - B1_Mur2 SINE Alu -15 134 1 4 782 243 323 10 40 chr6 25844939 25845039 -123671998 - MLT1A1 LTR MaLR -12 396 300 4 782 627 175 0 0 chr6 25845368 25845488 -123671549 + CT-rich Low_complexity Low_complexity 1 120 0 4 782 1334 125 13 13 chr6 25845488 25845715 -123671322 - L1_Mus3 LINE L1 -1 6637 6411 4 782 21 0 0 0 chr6 25846474 25846495 -123670542 + AT_rich Low_complexity Low_complexity 1 21 0 4 782 976 152 6 6 chr6 25846707 25846873 -123670164 - B2_Mm2 SINE B2 -1 194 29 4 782 1322 97 16 5 chr6 25846874 25847060 -123669977 - B2_Mm2 SINE B2 -7 188 1 4 782 1634 333 43 96 chr6 25847252 25848491 -123668546 + Lx8 LINE L1 6273 7445 -28 4 782 331 283 46 19 chr6 25848538 25848646 -123668391 + MTD LTR MaLR 1 111 -308 4 782 2405 116 139 23 chr6 25848695 25849127 -123667910 + RLTR45 LTR ERVK 1 482 0 4 782 459 318 185 32 chr6 25849164 25849602 -123667435 + Lx8 LINE L1 6963 7467 -6 4 782 332 262 21 21 chr6 25849704 25849848 -123667189 + (TA)n Simple_repeat Simple_repeat 2 145 0 4 782 21 0 0 0 chr6 25850056 25850077 -123666960 + AT_rich Low_complexity Low_complexity 1 21 0 4 782 285 29 0 0 chr6 25852674 25852708 -123664329 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 782 474 175 0 0 chr6 25852712 25852792 -123664245 - B1_Mus2 SINE Alu -21 126 47 4 782 612 91 0 0 chr6 25852999 25853087 -123663950 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 782 254 333 0 57 chr6 25853193 25853298 -123663739 - MLT1H LTR MaLR -185 364 266 4 782 375 336 9 0 chr6 25853870 25853977 -123663060 - PB1D10 SINE Alu -8 109 2 4 782 428 315 68 46 chr6 25854184 25854464 -123662573 - B4A SINE B4 -4 288 3 4 782 660 361 99 60 chr6 25854580 25855063 -123661974 - MLT2B3 LTR ERVL -39 515 14 4 782 410 257 0 34 chr6 25856312 25856429 -123660608 + Lx4B LINE L1 6942 7054 -4 4 782 414 0 0 0 chr6 25856540 25856586 -123660451 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 782 2099 235 72 13 chr6 25857800 25858355 -123658682 - Lx7 LINE L1 0 7696 7109 4 782 1740 242 92 10 chr6 25858351 25858764 -123658273 - Lx7 LINE L1 -985 6711 6265 4 782 1086 68 0 39 chr6 25858917 25859070 -123657967 + B1_Mus1 SINE Alu 1 147 -1 4 782 25 75 0 0 chr6 25859117 25859170 -123657867 + AT_rich Low_complexity Low_complexity 1 53 0 4 782 186 43 0 0 chr6 25859455 25859478 -123657559 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 782 2767 78 12 0 chr6 25860580 25860990 -123656047 - L1_Mus3 LINE L1 -675 5963 5549 4 782 4607 90 8 49 chr6 25860990 25861704 -123655333 + L1_Mus3 LINE L1 5948 6632 -6 4 782 2708 190 8 0 chr6 25861719 25862213 -123654824 - Lx4A LINE L1 -2 7056 6559 4 782 336 312 56 0 chr6 25863283 25863408 -123653629 + L2a LINE L2 3294 3425 -1 4 782 231 382 58 5 chr6 25863793 25863998 -123653039 - L2a LINE L2 -161 3265 3050 4 782 22 0 0 0 chr6 25865407 25865429 -123651608 + AT_rich Low_complexity Low_complexity 1 22 0 4 782 2054 53 7 15 chr6 25865457 25865726 -123651311 + L1_Mus2 LINE L1 6227 6493 -73 4 782 1632 134 124 0 chr6 25865865 25866156 -123650881 - IAPEY3_LTR LTR ERVK -5 327 1 4 782 192 77 0 0 chr6 25866408 25866434 -123650603 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 782 641 302 6 12 chr6 25866910 25867074 -123649963 + RSINE1 SINE B4 3 165 0 4 782 287 265 36 0 chr6 25868812 25868895 -123648142 - B3 SINE B2 -2 214 129 4 782 387 0 0 0 chr6 25868908 25868951 -123648086 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 4 782 640 47 0 0 chr6 25868951 25869037 -123648000 - B1_Mus2 SINE Alu -61 86 1 4 782 473 264 19 19 chr6 25869037 25869145 -123647892 - B3 SINE B2 -105 111 4 4 782 270 136 0 0 chr6 25869172 25869216 -123647821 + (CTG)n Simple_repeat Simple_repeat 2 45 0 4 782 390 186 0 0 chr6 25869403 25869489 -123647548 + (CA)n Simple_repeat Simple_repeat 2 87 0 4 782 27 49 0 0 chr6 25869585 25869626 -123647411 + AT_rich Low_complexity Low_complexity 1 41 0 4 782 23 0 0 0 chr6 25869933 25869956 -123647081 + AT_rich Low_complexity Low_complexity 1 23 0 4 782 437 169 36 0 chr6 25869964 25870047 -123646990 - Lx3B LINE L1 -3 6970 6885 4 782 1076 267 146 15 chr6 25870130 25870472 -123646565 - MTD LTR MaLR 0 419 33 4 782 5490 181 16 21 chr6 25870901 25871966 -123645071 - Lx4A LINE L1 -9 7049 5990 4 782 4819 144 10 0 chr6 25872142 25872938 -123644099 - L1_Mur2 LINE L1 -1383 4494 3691 4 782 455 202 0 21 chr6 25872932 25873028 -123644009 - L1_Mur2 LINE L1 -6519 567 474 4 782 570 146 0 0 chr6 25873087 25873183 -123643854 + (TTC)n Simple_repeat Simple_repeat 3 98 0 4 782 369 364 85 16 chr6 25873828 25874194 -123642843 - L1M5 LINE L1 -826 5320 4930 4 782 418 275 18 24 chr6 25874518 25874682 -123642355 + (TATATG)n Simple_repeat Simple_repeat 2 164 0 4 782 216 0 0 0 chr6 25874810 25874834 -123642203 + (TC)n Simple_repeat Simple_repeat 1 24 0 4 782 790 272 58 45 chr6 25874975 25875402 -123641635 - L1M5 LINE L1 -1132 5014 4582 4 782 257 348 37 19 chr6 25875928 25876089 -123640948 + RMER15 LTR ERVL 410 573 -2 4 782 979 217 28 14 chr6 25876521 25876736 -123640301 - ORR1C2 LTR MaLR 0 384 167 4 782 481 41 13 39 chr6 25876736 25876813 -123640224 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 782 721 192 113 6 chr6 25876814 25876982 -123640055 - ORR1C2 LTR MaLR -191 187 2 4 782 1687 304 28 54 chr6 25877421 25878145 -123638892 + Lx9 LINE L1 6668 7372 -272 4 782 226 194 63 89 chr6 25878148 25878227 -123638810 - MTB_Mm LTR MaLR -80 327 251 4 782 22 0 0 0 chr6 25878248 25878270 -123638767 + AT_rich Low_complexity Low_complexity 1 22 0 4 782 635 170 94 117 chr6 25879826 25880006 -123637031 - MTD LTR MaLR -14 405 230 4 782 494 345 89 29 chr6 25880071 25880220 -123636817 - Lx8 LINE L1 -96 7377 7212 4 782 552 68 0 0 chr6 25880220 25880293 -123636744 + (TC)n Simple_repeat Simple_repeat 1 73 0 4 782 494 345 89 29 chr6 25880293 25880525 -123636512 - Lx8 LINE L1 -262 7211 6973 4 782 412 264 0 0 chr6 25880525 25880612 -123636425 - MTC LTR MaLR -222 199 113 5 782 1484 134 4 31 chr6 25880612 25880873 -123636164 + Lx LINE L1 6400 6653 -1 5 782 610 75 0 21 chr6 25880874 25880969 -123636068 + (GAAA)n Simple_repeat Simple_repeat 4 96 0 5 782 654 88 0 0 chr6 25881048 25881139 -123635898 + B1_Mus1 SINE Alu 37 127 -21 5 782 2399 132 106 2 chr6 25881139 25881543 -123635494 + RLTR44B LTR ERVK 1 446 -3 5 782 624 161 62 0 chr6 25881546 25881658 -123635379 + RLTR44-int LTR ERVK 1 119 -2693 5 782 4278 71 0 0 chr6 25881681 25882219 -123634818 + RLTR44-int LTR ERVK 874 1411 -1401 5 782 292 338 0 0 chr6 25882825 25882902 -123634135 + B4 SINE B4 4 80 -212 5 782 469 300 40 9 chr6 25882971 25883109 -123633928 + B4A SINE B4 80 221 -71 5 782 522 146 0 0 chr6 25883755 25883851 -123633186 + (CA)n Simple_repeat Simple_repeat 1 96 0 5 782 632 303 23 0 chr6 25883939 25884114 -123632923 + Lx8 LINE L1 6248 6426 -1047 5 782 239 235 0 0 chr6 25884104 25884155 -123632882 + Lx8 LINE L1 6617 6667 -806 5 782 238 80 20 20 chr6 25884758 25884809 -123632228 + (CAAA)n Simple_repeat Simple_repeat 3 53 0 5 782 2838 174 4 13 chr6 25884813 25885355 -123631682 + Lx2 LINE L1 3343 3879 -1998 5 782 1775 130 0 0 chr6 25885351 25885612 -123631425 + L1Md_F2 LINE L1 5325 5585 -298 5 782 7662 61 3 6 chr6 25885613 25886602 -123630435 + L1Md_F2 LINE L1 5587 6572 -10 5 782 2331 151 5 0 chr6 25886605 25887016 -123630021 + L1_Mur1 LINE L1 3476 3888 -1998 5 782 8327 154 15 7 chr6 25887012 25888660 -123628377 + Lx2 LINE L1 5325 6995 -2 5 782 21 0 0 0 chr6 25889900 25889921 -123627116 + AT_rich Low_complexity Low_complexity 1 21 0 5 782 315 0 0 0 chr6 25889938 25889973 -123627064 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 782 2434 91 20 0 chr6 25890234 25890587 -123626450 - L1_Mus3 LINE L1 -12 6626 6267 5 782 1179 92 0 0 chr6 25890604 25890922 -123626115 + (TTC)n Simple_repeat Simple_repeat 1 318 0 5 782 413 338 26 19 chr6 25890923 25891077 -123625960 - MLT1A LTR MaLR -219 155 1 5 782 225 260 35 94 chr6 25891887 25891972 -123625065 + RLTR20A2 LTR ERVK 233 312 -266 5 782 234 58 57 19 chr6 25891992 25892045 -123624992 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 5 782 226 313 125 33 chr6 25892699 25892851 -123624186 + L2c LINE L2 3071 3236 -151 5 782 22 0 0 0 chr6 25895041 25895063 -123621974 + AT_rich Low_complexity Low_complexity 1 22 0 5 782 1413 140 127 78 chr6 25895079 25895426 -123621611 - ORR1A4 LTR MaLR 0 367 1 5 782 2790 237 58 44 chr6 25896671 25897470 -123619567 - Lx7 LINE L1 -83 7613 6804 5 782 600 179 36 0 chr6 25897648 25897760 -123619277 + ORR1B1 LTR MaLR 1 116 -278 5 782 353 253 0 24 chr6 25897760 25897845 -123619192 + RMER12 LTR ERVK 1 83 -1239 5 782 7724 55 8 1 chr6 25897850 25898817 -123618220 - L1Md_F2 LINE L1 0 6582 5609 5 782 281 268 0 0 chr6 25898834 25898890 -123618147 + RMER12 LTR ERVK 97 152 -1170 5 782 1238 247 136 52 chr6 25898935 25899259 -123617778 + RLTR22_Mur LTR ERVK 972 1318 -530 5 782 780 50 0 0 chr6 25899259 25899360 -123617677 + (TC)n Simple_repeat Simple_repeat 2 102 0 5 782 1238 221 153 55 chr6 25899360 25899672 -123617365 + RLTR22_Mur LTR ERVK 1287 1682 -166 5 782 1564 182 28 5 chr6 25899723 25900027 -123617010 + ORR1B1 LTR MaLR 25 386 -8 5 782 200 35 35 0 chr6 25900440 25900469 -123616568 + (GAA)n Simple_repeat Simple_repeat 2 31 0 5 782 652 87 11 0 chr6 25900550 25900642 -123616395 + BC1_Mm scRNA scRNA 1 93 -59 5 782 21 36 0 0 chr6 25901529 25901557 -123615480 + AT_rich Low_complexity Low_complexity 1 28 0 5 782 6106 198 70 8 chr6 25902253 25903884 -123613153 + Lx5 LINE L1 5231 7050 0 5 782 206 62 0 30 chr6 25903915 25903948 -123613089 + (TAA)n Simple_repeat Simple_repeat 2 33 0 5 782 4736 236 86 40 chr6 25903950 25905329 -123611708 - Lx7 LINE L1 -191 7505 6063 5 782 195 42 0 0 chr6 25905494 25905518 -123611519 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 782 21 36 0 0 chr6 25905773 25905801 -123611236 + AT_rich Low_complexity Low_complexity 1 28 0 5 782 216 300 33 16 chr6 25905893 25905954 -123611083 - B2_Mm2 SINE B2 -133 62 1 5 782 798 202 17 29 chr6 25906125 25906298 -123610739 - Lx9 LINE L1 -354 7290 7120 5 782 1111 208 102 0 chr6 25906320 25906633 -123610404 + Lx9 LINE L1 7299 7643 -1 5 782 23 0 0 0 chr6 25906769 25906792 -123610245 + AT_rich Low_complexity Low_complexity 1 23 0 5 782 375 105 0 0 chr6 25907568 25907625 -123609412 + (TTTTA)n Simple_repeat Simple_repeat 4 60 0 5 782 361 295 56 19 chr6 25907633 25907740 -123609297 - PB1D7 SINE Alu 0 120 10 5 782 4073 169 58 13 chr6 25908202 25908983 -123608054 + Lx LINE L1 5826 6641 -13 5 782 660 318 36 0 chr6 25909296 25909491 -123607546 + B3 SINE B2 9 210 -6 5 782 624 27 0 0 chr6 25909732 25909806 -123607231 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 5 782 197 221 15 0 chr6 25911061 25911129 -123605908 + (CATG)n Simple_repeat Simple_repeat 3 71 0 5 782 214 299 15 0 chr6 25911130 25911197 -123605840 + (TCCA)n Simple_repeat Simple_repeat 4 71 0 5 782 543 267 87 5 chr6 25912059 25912255 -123604782 - B3 SINE B2 -1 215 4 5 782 22 0 0 0 chr6 25912586 25912608 -123604429 + AT_rich Low_complexity Low_complexity 1 22 0 5 782 672 281 25 5 chr6 25913390 25913587 -123603450 + B3 SINE B2 1 201 -15 5 782 249 281 87 47 chr6 25914106 25914233 -123602804 + MLT1A1 LTR MaLR 242 373 -35 5 782 893 367 127 60 chr6 25914288 25915209 -123601828 + MLT1A0-int LTR MaLR 29 1011 -724 5 782 1098 328 48 15 chr6 25915382 25915837 -123601200 + MLT1A0-int LTR MaLR 1266 1735 0 5 782 344 306 52 52 chr6 25915837 25915983 -123601054 + MLT1A0 LTR MaLR 15 160 -205 5 782 622 37 0 24 chr6 25915996 25916080 -123600957 - B1_Mm SINE Alu 0 147 66 5 782 1615 187 47 3 chr6 25916347 25916664 -123600373 - Lx4B LINE L1 -356 6702 6372 5 782 300 212 30 0 chr6 25916669 25916735 -123600302 - ORR1E LTR MaLR -291 68 1 5 782 189 0 0 0 chr6 25917455 25917476 -123599561 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 782 1120 88 0 9 chr6 25917710 25917941 -123599096 + (TTTC)n Simple_repeat Simple_repeat 1 228 0 5 782 7418 97 5 12 chr6 25917970 25919380 -123597657 - L1_Mus3 LINE L1 0 6638 5238 5 782 1407 152 0 0 chr6 25919378 25919609 -123597428 + L1_Mur2 LINE L1 3460 3690 -2187 5 782 498 70 0 0 chr6 25920825 25920896 -123596141 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 782 950 301 104 3 chr6 25921030 25921367 -123595670 + MTD LTR MaLR 1 371 -48 5 782 1249 179 38 97 chr6 25921894 25922184 -123594853 - ORR1A4 LTR MaLR -54 275 3 5 782 846 170 26 21 chr6 25922192 25922384 -123594653 - ORR1A4-int LTR MaLR -7 1956 1764 5 782 28 0 0 0 chr6 25922573 25922601 -123594436 + AT_rich Low_complexity Low_complexity 1 28 0 5 782 401 161 0 11 chr6 25923008 25923096 -123593941 + GA-rich Low_complexity Low_complexity 1 87 0 5 782 952 300 41 6 chr6 25923445 25923787 -123593250 - Ricksha DNA MuDR -1038 2208 1855 5 782 247 350 42 8 chr6 25924501 25924619 -123592418 + RMER12 LTR ERVK 727 848 -474 5 782 26 50 0 0 chr6 25924707 25924747 -123592290 + AT_rich Low_complexity Low_complexity 1 40 0 5 782 273 289 0 32 chr6 25924866 25924959 -123592078 + CT-rich Low_complexity Low_complexity 2 91 0 5 782 26 0 0 0 chr6 25925652 25925678 -123591359 + AT_rich Low_complexity Low_complexity 1 26 0 5 782 467 75 0 0 chr6 25926150 25926217 -123590820 + MusHAL1 LINE L1 630 696 -2658 5 782 1117 268 25 14 chr6 25928238 25928514 -123588523 - MTD LTR MaLR -1 418 140 5 782 21 0 0 0 chr6 25929219 25929240 -123587797 + AT_rich Low_complexity Low_complexity 1 21 0 5 782 1639 163 11 3 chr6 25929240 25929523 -123587514 - Lx LINE L1 -7 6647 6363 5 782 24 0 0 0 chr6 25929581 25929605 -123587432 + AT_rich Low_complexity Low_complexity 1 24 0 5 782 3673 28 5 0 chr6 25929703 25930133 -123586904 - L1Md_F2 LINE L1 -2 6580 6149 5 782 983 288 70 46 chr6 25930627 25930955 -123586082 - MTE2a LTR MaLR -8 371 36 5 782 2997 40 136 0 chr6 25931401 25931805 -123585232 + L1Md_F3 LINE L1 6126 6584 0 5 782 23 0 0 0 chr6 25932041 25932064 -123584973 + AT_rich Low_complexity Low_complexity 1 23 0 5 782 34789 41 43 3 chr6 25932797 25938863 -123578174 - L1Md_T LINE L1 0 6585 179 5 782 422 320 12 61 chr6 25940194 25940357 -123576680 - RSINE1 SINE B4 -8 157 3 5 782 22 0 0 0 chr6 25940838 25940860 -123576177 + AT_rich Low_complexity Low_complexity 1 22 0 5 782 23 0 0 0 chr6 25941492 25941515 -123575522 + AT_rich Low_complexity Low_complexity 1 23 0 5 782 3460 15 5 0 chr6 25941868 25942262 -123574775 - MTA_Mm LTR MaLR 0 396 1 5 782 227 351 70 56 chr6 25942542 25942756 -123574281 - MIR SINE MIR -26 236 20 5 782 5928 62 1 8 chr6 25942760 25943529 -123573508 - L1Md_F2 LINE L1 0 6582 5819 5 782 845 63 0 0 chr6 25944492 25944603 -123572434 + B1_Mus1 SINE Alu 38 148 0 5 782 270 297 0 0 chr6 25944906 25944980 -123572057 + Lx5 LINE L1 6542 6615 -435 5 782 5456 111 47 0 chr6 25944960 25946098 -123570939 - L1_Mus3 LINE L1 -624 6426 4896 5 782 3394 118 2 46 chr6 25946100 25946662 -123570375 + L1_Mus4 LINE L1 6099 6635 -1 5 782 468 62 0 0 chr6 25946667 25946731 -123570306 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 782 1203 267 61 3 chr6 25946737 25947030 -123570007 + Lx5 LINE L1 6608 6917 -133 5 782 25 31 0 0 chr6 25947908 25947940 -123569097 + AT_rich Low_complexity Low_complexity 1 32 0 5 782 617 212 223 0 chr6 25948160 25948344 -123568693 - URR1B DNA MER1_type 0 225 1 5 782 308 298 61 24 chr6 25948356 25948521 -123568516 - L1MA7 LINE L1 -364 5927 5757 5 782 254 258 51 10 chr6 25948608 25948706 -123568331 - L1M3 LINE L1 -565 5603 5502 5 782 4675 111 105 1 chr6 25948719 25949443 -123567594 - L1_Mus3 LINE L1 -6 6632 5834 5 782 2310 129 6 0 chr6 25949448 25949813 -123567224 - L1_Mm LINE L1 -1090 4793 4427 5 782 4499 97 15 1 chr6 25950172 25951081 -123565956 + L1_Mus2 LINE L1 5190 6112 -454 5 782 2092 92 28 0 chr6 25951086 25951403 -123565634 - IAPEY2_LTR LTR ERVK 0 357 32 5 782 2067 107 6 48 chr6 25951407 25951740 -123565297 + L1_Mus2 LINE L1 6095 6413 -153 5 97 13722 182 14 88 chr6 25951734 25953724 -123563313 - L1VL2 LINE L1 -1440 4437 2467 6 783 2172 77 30 20 chr6 25953724 25954028 -123563009 + IAPLTR2b LTR ERVK 1 307 -20 6 783 13722 182 14 88 chr6 25954028 25956118 -123560919 - L1VL2 LINE L1 -1440 2466 395 6 783 261 0 0 0 chr6 25956397 25956426 -123560611 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 783 317 319 86 30 chr6 25956470 25956703 -123560334 + L1MB8 LINE L1 5677 5922 -256 6 783 2335 305 24 47 chr6 25959267 25960185 -123556852 + Lx8 LINE L1 6577 7473 0 6 783 860 174 14 0 chr6 25960251 25960389 -123556648 - B1_Mus1 SINE Alu 0 148 9 6 783 201 300 36 36 chr6 25962382 25962465 -123554572 + C-rich Low_complexity Low_complexity 5 87 0 6 783 238 319 298 0 chr6 25962722 25962816 -123554221 + RSINE1 SINE B4 6 127 -38 6 783 450 0 0 0 chr6 25962836 25962886 -123554151 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 783 228 35 0 0 chr6 25962886 25962914 -123554123 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 783 25 0 0 0 chr6 25963045 25963070 -123553967 + AT_rich Low_complexity Low_complexity 1 25 0 6 783 189 0 0 0 chr6 25963592 25963613 -123553424 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 6 783 519 184 0 0 chr6 25963614 25963750 -123553287 + CT-rich Low_complexity Low_complexity 1 136 0 6 783 24 0 0 0 chr6 25963798 25963822 -123553215 + AT_rich Low_complexity Low_complexity 1 24 0 6 783 387 231 94 29 chr6 25963824 25963962 -123553075 + L1_Mur3 LINE L1 2521 2667 -3213 6 783 671 138 90 17 chr6 25964078 25964227 -123552810 - L1_Mur3 LINE L1 -3064 2813 2658 6 783 1954 113 112 36 chr6 25964227 25964658 -123552379 - RLTR10 LTR ERVK 0 411 1 6 783 1857 204 92 44 chr6 25964659 25965202 -123551835 - L1_Mur3 LINE L1 -3208 2672 2104 6 783 4804 179 27 138 chr6 25965232 25966807 -123550230 + L1Md_F LINE L1 273 1535 -4348 6 783 2708 42 0 12 chr6 25966807 25967147 -123549890 + L1Md_F3 LINE L1 6235 6570 -14 6 783 4804 100 5 100 chr6 25967147 25967760 -123549277 + L1Md_F LINE L1 1536 2058 -3825 6 783 1308 79 11 0 chr6 25967760 25967938 -123549099 + L1_Mus1 LINE L1 6388 6567 0 6 783 423 168 159 8 chr6 25967949 25968081 -123548956 - L1_Mur3 LINE L1 -3761 2119 1968 6 783 674 181 35 0 chr6 25968079 25968223 -123548814 - L1_Mur3 LINE L1 -4132 1748 1600 6 783 7474 74 1 20 chr6 25968263 25969336 -123547701 - L1_Mus2 LINE L1 -3 6563 5512 6 783 3334 229 109 24 chr6 25969330 25970419 -123546618 - L1_Mur3 LINE L1 -4389 1491 315 6 783 1561 320 81 72 chr6 25970469 25970825 -123546212 - Lx5 LINE L1 -17 7033 6633 6 783 572 0 15 0 chr6 25970825 25970893 -123546144 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 783 1561 320 81 72 chr6 25970893 25971815 -123545222 - Lx5 LINE L1 -418 6632 5743 6 783 351 256 12 0 chr6 25971827 25971909 -123545128 + RLTR15 LTR ERVK 13 95 -264 6 783 317 175 16 0 chr6 25972018 25972081 -123544956 - Lx5 LINE L1 -1302 5748 5685 6 783 4261 203 58 29 chr6 25972086 25972535 -123544502 - Lx5 LINE L1 -589 5288 4828 6 783 717 12 0 0 chr6 25972535 25972617 -123544420 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 783 4261 203 58 29 chr6 25972617 25973228 -123543809 - Lx5 LINE L1 -1050 4827 4199 6 783 716 98 0 0 chr6 25973230 25973332 -123543705 - L1_Mm LINE L1 -1074 4809 4708 6 783 290 115 0 0 chr6 25973333 25973385 -123543652 + Lx2 LINE L1 6946 6997 0 6 783 1268 62 6 0 chr6 25973439 25973618 -123543419 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 783 195 42 0 0 chr6 25973649 25973673 -123543364 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6 783 9380 96 30 11 chr6 25973673 25974714 -123542323 - Lx3_Mus LINE L1 -20 6989 5921 6 783 237 33 0 0 chr6 25974714 25974744 -123542293 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 6 783 1157 64 0 0 chr6 25974746 25974887 -123542150 - B1_Mus1 SINE Alu -6 142 2 6 783 9380 100 28 9 chr6 25974887 25975275 -123541762 - Lx3_Mus LINE L1 -1089 5920 5533 6 783 441 202 0 66 chr6 25975273 25975395 -123541642 - Lx LINE L1 -43 6611 6498 6 783 29 28 0 0 chr6 25976625 25976661 -123540376 + AT_rich Low_complexity Low_complexity 1 36 0 6 783 22 35 0 0 chr6 25976701 25976730 -123540307 + AT_rich Low_complexity Low_complexity 1 29 0 6 783 389 36 18 0 chr6 25977719 25977774 -123539263 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 783 855 46 0 0 chr6 25978975 25979083 -123537954 + (GA)n Simple_repeat Simple_repeat 1 108 0 6 783 660 314 146 12 chr6 25979127 25979469 -123537568 + MTD LTR MaLR 18 405 -14 6 783 21 36 0 0 chr6 25979879 25979907 -123537130 + AT_rich Low_complexity Low_complexity 1 28 0 6 783 403 319 79 26 chr6 25979956 25980223 -123536814 - L1ME3B LINE L1 -201 6039 5759 6 783 400 287 126 23 chr6 25980544 25980719 -123536318 + B3A SINE B2 5 197 -1 6 783 251 307 107 55 chr6 25981086 25981593 -123535444 + L1MB7 LINE L1 4149 4681 -1465 6 783 227 320 124 0 chr6 25981607 25981785 -123535252 + L1MB7 LINE L1 5097 5296 -850 6 783 623 321 60 14 chr6 25981800 25982106 -123534931 + L1MB7 LINE L1 5358 5675 -503 6 783 294 283 104 0 chr6 25982323 25982429 -123534608 + L1MB7 LINE L1 5996 6112 -72 6 783 22 35 0 0 chr6 25982758 25982787 -123534250 + AT_rich Low_complexity Low_complexity 1 29 0 6 783 369 281 42 34 chr6 25982790 25982908 -123534129 - RSINE1 SINE B4 -38 127 9 6 783 180 179 0 0 chr6 25982948 25982987 -123534050 + T-rich Low_complexity Low_complexity 1 39 0 6 783 279 328 31 62 chr6 25983285 25983415 -123533622 - L2c LINE L2 -8 3379 3254 6 783 266 135 39 0 chr6 25983813 25983865 -123533172 + CT-rich Low_complexity Low_complexity 1 54 0 6 783 480 18 0 0 chr6 25983908 25983965 -123533072 + (CATAA)n Simple_repeat Simple_repeat 1 57 0 6 783 352 175 21 0 chr6 25984602 25984699 -123532338 + GA-rich Low_complexity Low_complexity 1 99 0 6 783 3502 40 28 5 chr6 25985914 25986340 -123530697 - RLTR10C LTR ERVK 0 436 1 6 783 22 0 0 0 chr6 25986990 25987012 -123530025 + AT_rich Low_complexity Low_complexity 1 22 0 6 783 5897 133 29 6 chr6 25987432 25988401 -123528636 - Lx2 LINE L1 -1 6996 6006 6 783 22 80 0 0 chr6 25988619 25988669 -123528368 + AT_rich Low_complexity Low_complexity 1 50 0 6 783 1023 56 0 0 chr6 25989184 25989327 -123527710 + (CAAAC)n Simple_repeat Simple_repeat 2 144 0 6 783 3402 138 13 47 chr6 25990056 25990673 -123526364 - Lx3B LINE L1 -8 6968 6373 6 783 5049 77 20 10 chr6 25990669 25991362 -123525675 - L1Md_F2 LINE L1 -12 6570 5871 6 783 425 39 0 0 chr6 25991362 25991414 -123525623 + L1Md_F2 LINE L1 5818 5869 -713 6 783 4151 154 48 17 chr6 25991413 25992181 -123524856 - Lx3B LINE L1 -587 6386 5595 6 783 3734 126 28 31 chr6 25992179 25992819 -123524218 + Lx3B LINE L1 4941 5578 -308 6 783 4309 120 40 6 chr6 25995951 25996624 -123520413 + Lx2 LINE L1 6302 6997 0 6 783 272 312 56 0 chr6 25996849 25996993 -123520044 + L1M4 LINE L1 4722 4873 -1273 6 783 538 330 16 16 chr6 25997092 25997116 -123519921 - B3A SINE B2 -2 196 174 6 783 324 83 0 0 chr6 25997116 25997164 -123519873 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 783 538 330 16 16 chr6 25997164 25997330 -123519707 - B3A SINE B2 -25 173 6 6 783 11437 58 2 0 chr6 25997833 26000000 -123517037 - L1Md_F2 LINE L1 0 6582 4412 6 783 22818 81 3 2 chr6 26000000 26003997 -123513040 - L1Md_F LINE L1 -1472 4411 410 1 783 552 111 0 0 chr6 26004448 26004547 -123512490 + (TC)n Simple_repeat Simple_repeat 2 100 0 2 783 2191 326 62 28 chr6 26004596 26005743 -123511294 - Lx8 LINE L1 -203 7270 6085 3 783 460 231 60 47 chr6 26005993 26006143 -123510894 + L1_Rod LINE L1 5696 5847 0 4 783 2904 223 30 26 chr6 26007310 26008341 -123508696 + Lx5 LINE L1 912 1943 -3937 5 783 6305 134 23 13 chr6 26008405 26009459 -123507578 - Lx2 LINE L1 -5 6992 5929 6 783 4867 251 59 21 chr6 26009461 26011319 -123505718 + Lx5 LINE L1 4609 6573 -477 5 783 1049 115 0 0 chr6 26011319 26011467 -123505570 - B1_Mus1 SINE Alu 0 148 1 7 783 2752 300 89 44 chr6 26011467 26011946 -123505091 + Lx5 LINE L1 6574 7031 -19 5 783 294 29 0 0 chr6 26012021 26012056 -123504981 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 8 783 1083 67 0 0 chr6 26012056 26012191 -123504846 - B1_Mus2 SINE Alu -12 135 1 9 783 1045 81 0 106 chr6 26012213 26012392 -123504645 - L1_Mus2 LINE L1 0 6566 6407 1 783 297 0 0 0 chr6 26012539 26012572 -123504465 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 1 783 1242 100 0 0 chr6 26012574 26012754 -123504283 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 783 483 63 0 0 chr6 26012755 26012818 -123504219 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 1 783 408 370 91 56 chr6 26012994 26013335 -123503702 + ORR1E LTR MaLR 2 354 -5 1 783 2600 39 6 223 chr6 26014308 26014806 -123502231 + RLTR10 LTR ERVK 1 390 0 1 783 7828 46 1 9 chr6 26014816 26015782 -123501255 + RLTR10-int LTR ERVK 41 998 -989 1 783 338 266 39 8 chr6 26015846 26015975 -123501062 + RLTR10-int LTR ERVK 1462 1594 -5987 1 783 8563 25 7 0 chr6 26016057 26017045 -123499992 + RLTR10-int LTR ERVK 990 1984 -3 1 783 2600 39 6 223 chr6 26017047 26017545 -123499492 + RLTR10 LTR ERVK 1 390 0 1 783 2156 107 24 9 chr6 26017551 26017881 -123499156 - IAPLTR1a_Mm LTR ERVK -2 335 1 1 783 5544 71 33 12 chr6 26017883 26018638 -123498399 - IAPEz-int LTR ERVK -2 6479 5709 1 783 3119 17 0 0 chr6 26018629 26018986 -123498051 - IAPEz-int LTR ERVK -2124 4357 4001 1 783 6151 32 0 0 chr6 26018984 26019695 -123497342 - IAPEz-int LTR ERVK -3707 2774 2064 1 783 9538 127 41 32 chr6 26019728 26021487 -123495550 - IAPEz-int LTR ERVK -4614 1867 168 1 783 240 321 0 0 chr6 26021487 26021543 -123495494 - RLTR27 LTR ERVK -34 275 220 1 783 409 65 0 301 chr6 26021543 26021696 -123495341 - IAPEz-int LTR ERVK -6369 112 6 1 783 2156 107 24 9 chr6 26021696 26022026 -123495011 - IAPLTR1a_Mm LTR ERVK -2 335 1 1 783 714 194 82 42 chr6 26022966 26023290 -123493747 - Lx7 LINE L1 -6 7690 7107 1 783 21 0 0 0 chr6 26023290 26023311 -123493726 + AT_rich Low_complexity Low_complexity 1 21 0 2 783 606 254 53 6 chr6 26023319 26023489 -123493548 + Lx7 LINE L1 6905 7082 -614 2 783 24 0 0 0 chr6 26023650 26023674 -123493363 + AT_rich Low_complexity Low_complexity 1 24 0 2 783 455 332 100 47 chr6 26023697 26024328 -123492709 + L1ME2 LINE L1 5263 5928 -416 2 783 391 280 63 35 chr6 26024351 26024538 -123492499 - MTD LTR MaLR 0 419 196 2 783 210 213 0 21 chr6 26024584 26024632 -123492405 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 783 529 297 64 52 chr6 26024675 26024889 -123492148 - MTD LTR MaLR -220 199 1 2 783 346 217 157 14 chr6 26024895 26025035 -123492002 - MTD-int LTR MaLR -16 1242 1083 2 783 744 250 0 0 chr6 26025036 26025212 -123491825 - Lx3B LINE L1 -723 6274 6099 2 783 6614 140 14 19 chr6 26025204 26026299 -123490738 - Lx3B LINE L1 -1039 5934 4848 2 783 477 0 0 0 chr6 26026299 26026352 -123490685 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 783 6614 140 12 20 chr6 26026352 26026429 -123490608 - Lx3B LINE L1 -1039 4847 4771 2 783 226 91 0 0 chr6 26026437 26026470 -123490567 - Lx3B LINE L1 -1083 4803 4771 2 783 3164 151 58 0 chr6 26026472 26027023 -123490014 + Lx3B LINE L1 6389 6971 -2 2 783 444 111 0 0 chr6 26027104 26027176 -123489861 + (CAAAA)n Simple_repeat Simple_repeat 3 74 0 2 783 1053 288 114 63 chr6 26027295 26028157 -123488880 - MTD-int LTR MaLR -179 919 1 2 783 252 0 0 0 chr6 26028199 26028227 -123488810 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 783 360 318 27 9 chr6 26028249 26028360 -123488677 - MTD LTR MaLR -50 371 259 2 783 509 193 9 17 chr6 26028374 26028490 -123488547 + Lx5 LINE L1 6933 7047 -3 3 783 354 355 59 45 chr6 26028770 26029304 -123487733 + L1M2 LINE L1 3202 3729 -2417 3 783 728 315 38 18 chr6 26029408 26029921 -123487116 + L1M2 LINE L1 3924 4445 -1701 3 783 542 136 0 0 chr6 26030495 26030576 -123486461 + MTC LTR MaLR 1 81 -340 3 783 1063 90 0 0 chr6 26030580 26030724 -123486313 + B1_Mus1 SINE Alu 1 144 -4 3 783 553 93 56 0 chr6 26030724 26030831 -123486206 + (CAAGA)n Simple_repeat Simple_repeat 1 113 0 3 783 213 65 0 0 chr6 26031035 26031066 -123485971 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 783 341 316 58 0 chr6 26031158 26031315 -123485722 - L1MA8 LINE L1 -355 5936 5704 3 783 761 201 224 0 chr6 26031884 26032063 -123484974 - URR1B DNA MER1_type -1 224 6 3 783 1056 134 0 0 chr6 26032269 26032440 -123484597 + (GGGA)n Simple_repeat Simple_repeat 2 172 0 3 783 324 325 71 48 chr6 26032452 26032578 -123484459 + MTEa LTR MaLR 163 291 -88 4 783 22 0 0 0 chr6 26032597 26032619 -123484418 + AT_rich Low_complexity Low_complexity 1 22 0 4 783 247 197 169 84 chr6 26033035 26033118 -123483919 + MTEa LTR MaLR 282 371 -8 4 783 878 160 18 0 chr6 26033213 26033382 -123483655 - Lx2 LINE L1 -2 6995 6824 4 783 701 311 32 20 chr6 26033706 26034047 -123482990 - L1M5 LINE L1 -3261 2885 2541 4 783 436 356 158 30 chr6 26034089 26034944 -123482093 - L2 LINE L2 -548 2871 1908 4 783 1296 203 120 11 chr6 26035534 26035892 -123481145 - Lx9 LINE L1 -7 7637 7241 4 783 237 287 46 0 chr6 26035892 26035979 -123481058 + Zaphod DNA Tip100 2066 2156 -1875 4 783 22 0 0 0 chr6 26036925 26036947 -123480090 + AT_rich Low_complexity Low_complexity 1 22 0 4 783 2925 63 0 0 chr6 26037961 26038341 -123478696 + L1Md_F2 LINE L1 6202 6581 -1 4 783 288 0 0 0 chr6 26038652 26038684 -123478353 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 783 998 157 0 8 chr6 26038768 26039094 -123477943 + CT-rich Low_complexity Low_complexity 1 323 0 5 783 501 79 33 22 chr6 26040616 26040707 -123476330 + L1Md_F2 LINE L1 6491 6582 0 5 783 749 336 112 58 chr6 26040765 26041453 -123475584 - L1M2 LINE L1 -1150 4993 4269 5 783 21 57 0 0 chr6 26041944 26041979 -123475058 + AT_rich Low_complexity Low_complexity 1 35 0 5 783 4148 123 45 0 chr6 26042024 26042676 -123474361 - L1_Mus4 LINE L1 -18 6618 5938 5 783 6381 122 18 18 chr6 26042676 26043699 -123473338 - RLTR13D5 LTR ERVK 0 1023 1 5 783 878 105 8 8 chr6 26043699 26043837 -123473200 - L1_Mus4 LINE L1 -693 5943 5809 5 783 526 268 115 42 chr6 26043850 26044041 -123472996 + Lx9 LINE L1 6490 6694 -950 5 783 1058 220 0 61 chr6 26044040 26044287 -123472750 + Lx9 LINE L1 6797 7028 -616 5 783 467 124 158 9 chr6 26044292 26044406 -123472631 + Lx3A LINE L1 6837 6967 -14 5 783 198 0 0 0 chr6 26044406 26044428 -123472609 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 5 783 2099 217 105 8 chr6 26044428 26044963 -123472074 + Lx9 LINE L1 7023 7609 -35 5 783 6760 71 20 1 chr6 26044967 26045714 -123471323 - L1_Mus2 LINE L1 -566 6000 5248 5 783 540 0 0 0 chr6 26045714 26045774 -123471263 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 783 6760 71 35 2 chr6 26045774 26046056 -123470981 - L1_Mus2 LINE L1 -636 5247 4939 5 783 4153 87 2 0 chr6 26046061 26046622 -123470415 + L1_Mus1 LINE L1 6005 6566 -1 6 783 843 320 122 36 chr6 26046783 26047511 -123469526 + BLACKJACK DNA AcHobo 1462 2252 -692 6 783 515 256 112 68 chr6 26047517 26047722 -123469315 - B3 SINE B2 -1 215 2 6 783 259 330 35 0 chr6 26047861 26047976 -123469061 + MTC LTR MaLR 1 119 -300 6 783 2565 212 62 6 chr6 26048015 26048551 -123468486 - Lx5 LINE L1 -65 6985 6420 6 783 1350 270 56 19 chr6 26048561 26048988 -123468049 + Lx5 LINE L1 5912 6354 -696 6 783 379 318 32 39 chr6 26048989 26049143 -123467894 + MTC LTR MaLR 106 258 -163 6 783 21 36 0 0 chr6 26049371 26049399 -123467638 + AT_rich Low_complexity Low_complexity 1 28 0 6 783 1146 145 15 10 chr6 26050221 26050423 -123466614 - Lx2 LINE L1 -1 6996 6794 6 783 4157 91 4 0 chr6 26050504 26051141 -123465896 - L1Md_F LINE L1 -4063 1820 1182 6 783 218 32 32 0 chr6 26051142 26051173 -123465864 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 783 3588 108 4 2 chr6 26051176 26051195 -123465842 - L1Md_F LINE L1 -5483 1133 1115 6 783 3760 97 5 16 chr6 26051195 26051748 -123465289 - L1Md_F2 LINE L1 -2 6580 6034 7 783 3588 108 4 2 chr6 26051748 26052240 -123464797 - L1Md_F LINE L1 -5502 1114 622 6 783 7059 76 27 4 chr6 26052240 26053194 -123463843 + L1Md_F2 LINE L1 5595 6570 -12 7 783 212 77 0 25 chr6 26053266 26053306 -123463731 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 783 834 337 51 14 chr6 26053615 26053970 -123463067 - Lx8 LINE L1 -367 7106 6739 7 783 21 0 0 0 chr6 26054723 26054744 -123462293 + AT_rich Low_complexity Low_complexity 1 21 0 7 783 490 302 33 13 chr6 26055056 26055207 -123461830 + B3 SINE B2 53 206 -10 7 783 424 314 78 21 chr6 26055392 26055584 -123461453 - MLT1B LTR MaLR -179 211 9 7 783 396 276 108 48 chr6 26056349 26056761 -123460276 - L1ME2 LINE L1 -199 5965 5533 7 783 390 304 71 34 chr6 26056764 26057025 -123460012 - L1M4 LINE L1 -752 5394 5118 7 783 902 118 0 0 chr6 26057286 26057422 -123459615 + L1_Mur1 LINE L1 4378 4513 -1373 8 783 3191 104 57 2 chr6 26057418 26057890 -123459147 + Lx3A LINE L1 6250 6747 -234 8 783 268 258 89 13 chr6 26057889 26058046 -123458991 - L1M4 LINE L1 -1653 4493 4325 7 783 879 241 13 46 chr6 26058145 26058384 -123458653 - Lx7 LINE L1 -332 7364 7134 8 783 2580 136 17 7 chr6 26058956 26059377 -123457660 - Lx2 LINE L1 0 6997 6573 8 783 611 94 10 0 chr6 26059381 26059477 -123457560 + (GA)n Simple_repeat Simple_repeat 2 98 0 8 783 876 340 33 4 chr6 26059734 26060006 -123457031 - B4A SINE B4 -12 280 1 8 783 299 294 49 77 chr6 26060107 26060371 -123456666 - L1ME3 LINE L1 -251 5911 5655 8 783 558 0 0 0 chr6 26061997 26062059 -123454978 + (TA)n Simple_repeat Simple_repeat 2 63 0 8 783 33142 89 24 6 chr6 26063248 26064806 -123452231 - L1Md_F2 LINE L1 0 6582 4997 8 783 5566 58 1 4 chr6 26064806 26065519 -123451518 - L1Md_F2 LINE L1 0 6582 5872 8 783 33142 92 11 10 chr6 26065519 26070082 -123446955 - L1Md_F2 LINE L1 -887 4996 415 8 783 28 61 0 0 chr6 26070528 26070577 -123446460 + AT_rich Low_complexity Low_complexity 1 49 0 9 783 1030 108 0 25 chr6 26070588 26070750 -123446287 - L1_Mus1 LINE L1 -1 6566 6409 9 783 1935 106 0 0 chr6 26070750 26071014 -123446023 + L1_Mm LINE L1 5374 5637 -246 9 783 225 0 0 0 chr6 26071016 26071041 -123445996 + (T)n Simple_repeat Simple_repeat 1 25 0 9 783 8158 47 1 4 chr6 26071074 26072121 -123444916 - L1Md_F3 LINE L1 0 6584 5541 9 783 6363 76 0 0 chr6 26072118 26072934 -123444103 + L1_Mus1 LINE L1 5593 6408 -159 9 783 233 336 57 8 chr6 26072971 26073043 -123443994 + Tigger5 DNA MER2_type 156 233 -2173 9 783 629 259 109 43 chr6 26073043 26073273 -123443764 - MER2 DNA MER2_type -3 342 98 9 783 291 358 87 72 chr6 26074612 26074877 -123442160 - B4 SINE B4 -22 270 2 9 783 247 308 119 45 chr6 26076290 26076467 -123440570 + MamSINE1 SINE tRNA 12 201 -89 9 783 416 308 48 70 chr6 26076473 26076535 -123440502 + MTEb LTR MaLR 158 212 -167 1 783 1015 130 6 11 chr6 26076535 26076714 -123440323 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 783 416 308 48 70 chr6 26076714 26076878 -123440159 + MTEb LTR MaLR 213 378 -1 1 783 1194 248 48 13 chr6 26076962 26077273 -123439764 + Lx2B LINE L1 6674 6995 -5 1 783 293 309 32 0 chr6 26078120 26078214 -123438823 + Charlie4 DNA MER1_type 1816 1912 -49 1 783 252 86 0 0 chr6 26079754 26079789 -123437248 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 783 3511 127 6 7 chr6 26079793 26080339 -123436698 - Lx3A LINE L1 -17 6964 6420 1 783 4403 107 35 1 chr6 26080339 26080994 -123436043 + L1_Mur1 LINE L1 5206 5882 -4 1 783 313 305 59 30 chr6 26081015 26081150 -123435887 + L2a LINE L2 3287 3425 -1 1 783 274 367 0 39 chr6 26081300 26081402 -123435635 - B4A SINE B4 -23 269 172 1 783 526 272 88 0 chr6 26081677 26081813 -123435224 + ORR1D-int LTR MaLR 63 210 -1160 1 783 502 147 31 31 chr6 26081813 26081911 -123435126 + MTA_Mm LTR MaLR 1 98 -298 1 784 211 146 0 24 chr6 26083761 26083803 -123433234 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1 784 57 28 0 0 chr6 26083931 26084002 -123433035 + AT_rich Low_complexity Low_complexity 1 71 0 1 784 1701 257 28 46 chr6 26084107 26084608 -123432429 - RLTR11A2 LTR ERVK -17 510 19 1 784 2360 289 58 3 chr6 26084745 26085402 -123431635 - Lx6 LINE L1 -5 7455 6763 1 784 891 307 53 31 chr6 26085735 26086091 -123430946 + ORR1D2 LTR MaLR 5 368 -2 1 784 479 246 25 8 chr6 26086107 26086226 -123430811 + MLT1C LTR MaLR 343 463 -4 1 784 1146 288 59 11 chr6 26086901 26087259 -123429778 - MTE2a LTR MaLR -4 375 1 1 784 33 56 0 0 chr6 26087374 26087428 -123429609 + AT_rich Low_complexity Low_complexity 1 54 0 1 784 539 135 2 0 chr6 26087433 26087521 -123429516 + Lx2 LINE L1 6692 6780 -220 1 784 263 331 60 30 chr6 26088771 26088905 -123428132 - MIR SINE MIR -24 238 101 1 784 558 318 71 14 chr6 26089380 26089661 -123427376 - L1MC LINE L1 -1317 4829 4533 1 784 4650 69 2 27 chr6 26089849 26090486 -123426551 + L1_Mus1 LINE L1 5945 6565 -2 1 784 24 85 0 0 chr6 26091300 26091359 -123425678 + AT_rich Low_complexity Low_complexity 1 59 0 1 784 237 368 108 10 chr6 26093057 26093252 -123423785 + ID_B1 SINE B4 1 214 -10 1 784 597 306 47 4 chr6 26093842 26094075 -123422962 - Lx LINE L1 -746 6898 6656 1 784 441 272 77 40 chr6 26094427 26094679 -123422358 + MLT2B4 LTR ERVL 46 304 -110 1 784 288 292 56 35 chr6 26094742 26094884 -123422153 + B1F SINE Alu 5 149 0 1 784 1487 212 13 3 chr6 26094943 26095255 -123421782 - Lx LINE L1 -1 6653 6339 1 784 249 294 125 16 chr6 26096396 26096524 -123420513 + B1F SINE Alu 1 142 -7 1 784 494 286 24 78 chr6 26096536 26096741 -123420296 + B3A SINE B2 5 198 0 1 784 440 349 88 42 chr6 26097429 26097692 -123419345 + MLT1I LTR MaLR 68 342 -69 1 784 362 346 84 93 chr6 26098210 26098632 -123418405 - MLT1D LTR MaLR 0 505 84 1 784 6561 116 13 9 chr6 26098632 26099632 -123417405 - Lx3_Mus LINE L1 -8 7001 5998 1 784 362 346 84 93 chr6 26099632 26099706 -123417331 - MLT1D LTR MaLR -422 83 13 1 784 189 0 0 0 chr6 26099813 26099834 -123417203 + (A)n Simple_repeat Simple_repeat 1 21 0 1 784 1005 77 0 31 chr6 26099995 26100155 -123416882 + L1Md_F2 LINE L1 6427 6581 -1 1 784 1036 170 10 50 chr6 26100291 26100489 -123416548 - B2_Mm1t SINE B2 -3 190 1 1 784 21 0 0 0 chr6 26100907 26100928 -123416109 + AT_rich Low_complexity Low_complexity 1 21 0 1 784 380 297 58 5 chr6 26100945 26101059 -123415978 - B1F1 SINE Alu -20 129 10 1 784 291 286 104 9 chr6 26101087 26101193 -123415844 - MLT1D LTR MaLR -1 504 389 1 784 3504 27 76 13 chr6 26101197 26101644 -123415393 + IAPLTR2_Mm LTR ERVK 1 475 0 1 784 1011 115 25 85 chr6 26101645 26101844 -123415193 + IAPEz-int LTR ERVK 9 195 -6286 1 784 244 302 0 0 chr6 26101844 26101897 -123415140 + RLTR27 LTR ERVK 223 275 -34 1 784 3823 61 2 18 chr6 26101897 26102400 -123414637 + IAPEz-int LTR ERVK 168 662 -5819 1 784 2227 61 0 0 chr6 26102400 26102678 -123414359 + IAPEz-int LTR ERVK 1359 1636 -4845 1 784 5827 60 14 0 chr6 26102677 26103411 -123413626 + IAPEz-int LTR ERVK 5736 6479 -2 1 784 3551 27 74 9 chr6 26103413 26103859 -123413178 + IAPLTR2_Mm LTR ERVK 1 475 0 1 784 1062 103 23 0 chr6 26103958 26104133 -123412904 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 1 784 405 86 0 0 chr6 26104133 26104191 -123412846 + (TCC)n Simple_repeat Simple_repeat 3 60 0 1 784 180 0 0 0 chr6 26104315 26104335 -123412702 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 784 819 84 126 0 chr6 26104335 26104454 -123412583 - B1_Mus2 SINE Alu -13 134 1 1 784 21 0 0 0 chr6 26104455 26104476 -123412561 + AT_rich Low_complexity Low_complexity 1 21 0 1 784 1878 143 98 0 chr6 26104476 26104804 -123412233 - Lx3_Mus LINE L1 0 7009 6650 1 784 6599 156 10 5 chr6 26104817 26105953 -123411084 - Lx2A1 LINE L1 -6 7002 5862 1 784 637 132 2 9 chr6 26106237 26106355 -123410682 - L1_Mur2 LINE L1 -723 5157 5044 1 784 36824 48 5 19 chr6 26106345 26111474 -123405563 + L1Md_A LINE L1 522 5586 -297 1 784 8311 34 1 4 chr6 26111474 26112472 -123404565 + L1Md_A LINE L1 5587 6581 -1 1 784 8472 122 5 11 chr6 26112472 26113544 -123403493 + Lx2 LINE L1 5587 6643 -354 1 784 1336 126 33 0 chr6 26113545 26113760 -123403277 + Lx2 LINE L1 6776 6997 0 1 784 230 325 33 25 chr6 26114019 26114139 -123402898 + Tigger12 DNA MER2_type 1712 1832 -127 1 784 2811 153 92 49 chr6 26114837 26115488 -123401549 - RMER6C LTR ERVK -11 679 1 1 784 2872 59 46 0 chr6 26115534 26115905 -123401132 - RLTR10 LTR ERVK -2 388 1 1 784 8147 43 6 4 chr6 26115905 26116900 -123400137 - RLTR10-int LTR ERVK -1 1986 990 1 784 525 292 29 29 chr6 26117050 26117290 -123399747 - RLTR10-int LTR ERVK -5481 1061 822 1 784 4188 48 9 7 chr6 26117434 26118306 -123398731 - RLTR10-int LTR ERVK -995 992 41 1 784 2927 49 49 0 chr6 26118318 26118688 -123398349 - RLTR10 LTR ERVK -2 388 1 1 784 798 280 130 25 chr6 26119013 26119653 -123397384 - L1_Mur3 LINE L1 -19 5861 5169 1 784 228 86 0 0 chr6 26119770 26119805 -123397232 + (A)n Simple_repeat Simple_repeat 1 35 0 1 784 186 236 102 68 chr6 26120736 26120795 -123396242 + MIR SINE MIR 2 62 -200 1 784 551 315 290 23 chr6 26121393 26121723 -123395314 + MLT1D LTR MaLR 33 450 -17 1 784 1126 95 0 0 chr6 26121792 26121939 -123395098 + B1_Mus2 SINE Alu 1 147 0 1 784 1349 61 0 6 chr6 26121959 26122140 -123394897 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 784 342 67 0 0 chr6 26122140 26122185 -123394852 + (GGA)n Simple_repeat Simple_repeat 1 45 0 1 784 22 35 0 0 chr6 26123737 26123766 -123393271 + AT_rich Low_complexity Low_complexity 1 29 0 1 784 22 0 0 0 chr6 26123972 26123994 -123393043 + AT_rich Low_complexity Low_complexity 1 22 0 1 784 235 85 0 41 chr6 26124328 26124377 -123392660 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 784 194 62 31 0 chr6 26124381 26124413 -123392624 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 784 1024 46 0 0 chr6 26125654 26125785 -123391252 - B1_Mus2 SINE Alu 0 147 17 1 784 407 358 36 14 chr6 26127127 26127341 -123389696 - B3A SINE B2 -3 213 2 1 784 24 32 0 0 chr6 26128409 26128440 -123388597 + AT_rich Low_complexity Low_complexity 1 31 0 1 784 304 250 20 20 chr6 26128863 26129010 -123388027 - Lx9 LINE L1 -8 7636 7490 1 784 757 30 10 10 chr6 26129024 26129125 -123387912 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 1 784 278 312 135 21 chr6 26129131 26129272 -123387765 - Lx9 LINE L1 -228 7416 7260 1 784 437 303 75 47 chr6 26129543 26129641 -123387396 - Lx9 LINE L1 -50 7594 7502 1 784 234 105 0 0 chr6 26129641 26129679 -123387358 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1 784 437 303 75 47 chr6 26129679 26129940 -123387097 - Lx9 LINE L1 -143 7501 7225 1 784 323 304 0 94 chr6 26129988 26130148 -123386889 - Lx9 LINE L1 -518 7126 6982 1 784 1502 196 49 38 chr6 26130156 26130580 -123386457 + Lx LINE L1 6139 6654 0 1 784 488 340 133 29 chr6 26130573 26131109 -123385928 - Lx9 LINE L1 -695 6949 6358 1 784 344 44 22 0 chr6 26131110 26131155 -123385882 - HAL1-3A_ME LINE L1 -837 2021 1976 1 784 222 222 0 0 chr6 26131155 26131209 -123385828 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 784 534 242 144 32 chr6 26131214 26131661 -123385376 - Lx9 LINE L1 -1284 6189 5706 1 784 23 0 0 0 chr6 26131904 26131927 -123385110 + AT_rich Low_complexity Low_complexity 1 23 0 1 784 709 341 44 41 chr6 26132178 26132297 -123384740 - MTE-int LTR MaLR -725 855 741 1 784 450 0 0 0 chr6 26132297 26132347 -123384690 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 784 709 341 44 41 chr6 26132347 26132569 -123384468 - MTE-int LTR MaLR -840 740 514 1 784 508 265 40 34 chr6 26132579 26132755 -123384282 + Lx6 LINE L1 7257 7433 -27 1 784 1186 351 61 28 chr6 26132769 26133311 -123383726 - MTE-int LTR MaLR -1020 560 1 1 784 316 287 226 34 chr6 26133341 26133528 -123383509 - MTEb LTR MaLR -47 332 110 1 784 250 305 119 22 chr6 26134191 26134325 -123382712 + MLT1C LTR MaLR 318 464 -3 1 784 1081 74 0 0 chr6 26135336 26135471 -123381566 + B1_Mus2 SINE Alu 1 135 -12 1 784 387 0 0 0 chr6 26135471 26135514 -123381523 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1 784 457 303 14 14 chr6 26135730 26135877 -123381160 - B1_Mur1 SINE Alu -1 148 2 1 784 38 39 0 0 chr6 26135900 26135952 -123381085 + AT_rich Low_complexity Low_complexity 1 52 0 1 784 25 31 0 0 chr6 26136152 26136184 -123380853 + AT_rich Low_complexity Low_complexity 1 32 0 1 784 247 241 0 46 chr6 26137239 26137326 -123379711 + (CATA)n Simple_repeat Simple_repeat 3 85 0 1 784 264 346 64 0 chr6 26137828 26137906 -123379131 - RSINE1 SINE B4 -4 161 79 1 784 22 35 0 0 chr6 26138033 26138062 -123378975 + AT_rich Low_complexity Low_complexity 1 29 0 1 784 666 130 0 0 chr6 26139403 26139511 -123377526 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 784 553 344 32 33 chr6 26139609 26139905 -123377132 + ORR1E LTR MaLR 1 349 -10 1 784 630 281 100 68 chr6 26139918 26140197 -123376840 + ORR1E-int LTR MaLR 1 288 -1292 1 784 2029 340 85 50 chr6 26140346 26141380 -123375657 + ORR1E-int LTR MaLR 294 1363 -217 1 784 13703 6 0 0 chr6 26141919 26143461 -123373576 + L1Md_A LINE L1 4045 5586 -297 1 784 8993 4 0 0 chr6 26143461 26144494 -123372543 + L1Md_A LINE L1 5587 6582 0 1 784 306 0 0 0 chr6 26144581 26144615 -123372422 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 784 428 282 128 15 chr6 26144633 26144766 -123372271 + RSINE1 SINE B4 18 165 0 1 784 201 147 0 0 chr6 26144771 26144805 -123372232 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1 784 301 311 139 40 chr6 26144895 26145196 -123371841 - L1ME1 LINE L1 -82 6097 5767 1 784 339 272 73 18 chr6 26145697 26145862 -123371175 - Lx6 LINE L1 -26 7434 7261 1 784 22 35 0 0 chr6 26146230 26146259 -123370778 + AT_rich Low_complexity Low_complexity 1 29 0 1 784 301 167 0 0 chr6 26146398 26146446 -123370591 + Lx LINE L1 6113 6160 -494 1 784 3215 96 8 4 chr6 26146526 26147005 -123370032 + Lx LINE L1 6167 6647 -7 1 784 236 220 85 0 chr6 26147198 26147257 -123369780 + Lx6 LINE L1 7261 7324 -136 2 784 8332 39 0 4 chr6 26147280 26148430 -123368607 - L1Md_F2 LINE L1 -2 6580 5437 2 784 260 293 31 31 chr6 26148429 26148556 -123368481 + Lx6 LINE L1 7318 7444 -16 2 784 21 0 0 0 chr6 26148833 26148854 -123368183 + AT_rich Low_complexity Low_complexity 1 21 0 2 784 36 0 0 0 chr6 26149051 26149087 -123367950 + AT_rich Low_complexity Low_complexity 1 36 0 2 784 586 295 125 48 chr6 26150352 26150704 -123366333 + MTEb LTR MaLR 1 379 0 2 784 5129 124 12 1 chr6 26151139 26151890 -123365147 + Lx3A LINE L1 6212 6970 -11 2 784 479 264 76 6 chr6 26152177 26152426 -123364611 + L1M3 LINE L1 5204 5478 -690 2 784 1524 162 0 52 chr6 26152587 26152873 -123364164 + ORR1A4 LTR MaLR 6 276 -53 2 784 504 122 0 0 chr6 26153764 26153846 -123363191 + (GA)n Simple_repeat Simple_repeat 2 83 0 2 784 2980 133 25 0 chr6 26155131 26155603 -123361434 - Lx2 LINE L1 0 6997 6514 2 784 246 62 0 0 chr6 26155868 26155900 -123361137 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 784 216 158 0 0 chr6 26157101 26157139 -123359898 + CT-rich Low_complexity Low_complexity 1 38 0 2 784 524 254 90 20 chr6 26157161 26157362 -123359675 - B3 SINE B2 0 216 2 2 784 5228 146 36 3 chr6 26157416 26158314 -123358723 + Lx2 LINE L1 6070 6996 -1 2 784 406 364 59 25 chr6 26158813 26159050 -123357987 + L1MC2 LINE L1 5998 6242 -102 2 784 537 30 0 0 chr6 26159053 26159120 -123357917 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 784 24 0 0 0 chr6 26159589 26159613 -123357424 + AT_rich Low_complexity Low_complexity 1 24 0 2 784 512 235 39 19 chr6 26159759 26159915 -123357122 + L1MC2 LINE L1 6051 6209 -135 2 784 186 103 0 0 chr6 26160545 26160574 -123356463 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 784 395 296 21 14 chr6 26160839 26160983 -123356054 - Lx9 LINE L1 -827 6817 6673 2 784 2379 201 70 26 chr6 26162003 26162533 -123354504 - RLTR20B3 LTR ERVK -24 553 1 2 784 600 340 34 0 chr6 26162775 26162984 -123354053 + B3 SINE B2 1 216 0 2 784 325 283 92 46 chr6 26163476 26163650 -123353387 + L1MCa LINE L1 834 1015 -5493 2 784 348 329 97 27 chr6 26163796 26164055 -123352982 + L1MCa LINE L1 2480 2756 -3565 2 784 1056 125 0 0 chr6 26164057 26164209 -123352828 + L1_Mur2 LINE L1 5440 5591 -286 2 784 2663 194 19 4 chr6 26164215 26164742 -123352295 + Lx4B LINE L1 6160 6694 -364 2 784 21 0 0 0 chr6 26164746 26164767 -123352270 + AT_rich Low_complexity Low_complexity 1 21 0 2 784 258 172 0 17 chr6 26164773 26164832 -123352205 - Lx6 LINE L1 -27 7433 7376 2 784 183 100 0 0 chr6 26166311 26166341 -123350696 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 2 784 27 73 0 0 chr6 26166852 26166907 -123350130 + AT_rich Low_complexity Low_complexity 1 55 0 2 784 434 221 0 8 chr6 26167109 26167241 -123349796 + (TA)n Simple_repeat Simple_repeat 2 132 0 2 784 360 152 0 0 chr6 26167278 26167344 -123349693 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2 784 977 252 152 58 chr6 26167894 26168160 -123348877 - Lx6 LINE L1 -26 7434 7155 2 784 360 0 0 0 chr6 26168160 26168200 -123348837 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 784 977 252 152 58 chr6 26168200 26168379 -123348658 - Lx6 LINE L1 -306 7154 6947 2 784 272 188 0 0 chr6 26168355 26168403 -123348634 - Lx4B LINE L1 -443 6615 6568 2 784 7104 84 58 3 chr6 26169635 26170604 -123346433 - RLTR13D5 LTR ERVK 0 1023 2 2 784 25 0 0 0 chr6 26170956 26170981 -123346056 + AT_rich Low_complexity Low_complexity 1 25 0 2 784 843 276 102 22 chr6 26172173 26172662 -123344375 - L1_Mur3 LINE L1 -1354 4526 3999 2 784 343 278 65 40 chr6 26172659 26172858 -123344179 - L1_Mur3 LINE L1 -1998 3882 3679 2 784 7868 124 54 12 chr6 26172844 26174107 -123342930 + Lx3A LINE L1 5659 6974 -7 2 784 597 64 0 0 chr6 26174109 26174187 -123342850 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 2 784 269 230 7 19 chr6 26174229 26174384 -123342653 + CT-rich Low_complexity Low_complexity 2 154 0 2 784 1382 236 25 29 chr6 26176674 26177067 -123339970 + L1_Mur2 LINE L1 871 1258 -5828 2 784 252 77 0 0 chr6 26177067 26177106 -123339931 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 784 1382 216 28 11 chr6 26177106 26177236 -123339801 + L1_Mur2 LINE L1 1259 1393 -4484 2 784 31840 92 8 2 chr6 26177253 26182430 -123334607 + L1Md_F2 LINE L1 380 5585 -298 2 784 7773 57 9 0 chr6 26182431 26183416 -123333621 + L1Md_F2 LINE L1 5587 6580 -2 2 784 911 199 28 14 chr6 26183416 26183630 -123333407 + L1_Mur2 LINE L1 4154 4370 -1507 2 784 3408 186 18 4 chr6 26183630 26184337 -123332700 + L1_Mur2 LINE L1 4576 5292 -585 2 784 2293 164 5 0 chr6 26184336 26184715 -123332322 - L1_Mm LINE L1 -261 5622 5242 2 784 21 0 0 0 chr6 26185094 26185115 -123331922 + AT_rich Low_complexity Low_complexity 1 21 0 2 784 284 257 26 26 chr6 26185320 26185476 -123331561 + (TA)n Simple_repeat Simple_repeat 1 156 0 2 784 197 65 32 0 chr6 26185478 26185509 -123331528 + (TATAA)n Simple_repeat Simple_repeat 5 36 0 2 784 434 279 52 52 chr6 26185509 26185664 -123331373 - B3A SINE B2 -19 176 22 2 784 189 132 0 0 chr6 26185722 26185760 -123331277 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 2 784 283 340 19 50 chr6 26185780 26185941 -123331096 - MTEb LTR MaLR -183 196 41 2 784 301 305 153 51 chr6 26187183 26187359 -123329678 - L1ME1 LINE L1 -259 5920 5727 2 784 3229 145 16 0 chr6 26187498 26188015 -123329022 + Lx3B LINE L1 6445 6969 -4 2 784 939 249 200 20 chr6 26188134 26188479 -123328558 + MTD LTR MaLR 1 407 -12 2 784 976 70 6 119 chr6 26189274 26189451 -123327586 + L1_Mus2 LINE L1 6410 6566 0 2 784 256 382 31 14 chr6 26189687 26189910 -123327127 + HERV16-int LTR ERVL 2383 2609 -2387 2 784 2580 299 52 100 chr6 26190822 26192077 -123324960 - RMER1C Other Other -4 1338 145 2 784 351 0 0 0 chr6 26192138 26192177 -123324860 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 784 231 262 30 15 chr6 26192193 26192259 -123324778 - RMER1B Other Other -397 669 603 2 784 441 116 58 11 chr6 26192626 26192713 -123324324 - L1_Mus3 LINE L1 -9 6629 6539 2 784 316 293 25 25 chr6 26193129 26193248 -123323789 + L1MA6 LINE L1 5162 5280 -863 2 784 1054 305 101 19 chr6 26193280 26193736 -123323301 + L1MA6 LINE L1 5299 5795 -361 2 784 840 34 34 0 chr6 26193736 26193855 -123323182 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 2 784 1054 306 98 60 chr6 26193855 26193940 -123323097 + L1MA6 LINE L1 5796 5852 -448 2 784 1398 34 6 0 chr6 26193940 26194117 -123322920 - L1Md_F3 LINE L1 -1 6583 6406 2 784 1054 306 98 60 chr6 26194117 26194465 -123322572 + L1MA6 LINE L1 5853 6231 -69 2 784 2413 186 228 3 chr6 26195635 26195892 -123321145 + RMER6D LTR ERVK 1 299 -421 2 784 378 0 0 0 chr6 26195892 26195934 -123321103 + (TGG)n Simple_repeat Simple_repeat 2 43 0 2 784 501 68 0 0 chr6 26195937 26196011 -123321026 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 784 2413 186 228 3 chr6 26196011 26196337 -123320700 + RMER6D LTR ERVK 300 717 -3 2 784 249 312 0 0 chr6 26196532 26196612 -123320425 + L1MA5 LINE L1 6199 6278 -22 2 784 4748 136 39 5 chr6 26196836 26197589 -123319448 + L1Md_F2 LINE L1 366 1143 -5473 2 784 37865 11 1 7 chr6 26197594 26202804 -123314233 + L1Md_A LINE L1 416 5586 -297 2 784 8827 13 0 0 chr6 26202804 26203800 -123313237 + L1Md_A LINE L1 5587 6582 0 2 784 31422 83 4 1 chr6 26203800 26208226 -123308811 + L1Md_F2 LINE L1 1156 5586 -297 2 784 6944 99 5 6 chr6 26208226 26209223 -123307814 + L1Md_F2 LINE L1 5587 6582 0 2 784 249 254 0 0 chr6 26209223 26209278 -123307759 + RCHARR1 DNA MER1_type 663 717 -257 2 784 301 271 96 62 chr6 26209497 26209769 -123307268 - L1MA7 LINE L1 -96 6195 5915 2 784 3009 170 11 17 chr6 26210232 26210765 -123306272 - Lx2B LINE L1 -1 6999 6470 2 784 1116 338 24 26 chr6 26211368 26211900 -123305137 - Lx8 LINE L1 -525 6948 6418 2 784 594 116 21 21 chr6 26212096 26212237 -123304800 + (TA)n Simple_repeat Simple_repeat 2 142 0 2 784 27 0 0 0 chr6 26212394 26212421 -123304616 + AT_rich Low_complexity Low_complexity 1 27 0 2 784 1191 148 9 5 chr6 26212927 26213138 -123303899 - Lx2 LINE L1 -11 6986 6775 2 784 516 133 0 0 chr6 26213138 26213213 -123303824 - Lx2 LINE L1 -354 6643 6569 2 784 1040 148 6 0 chr6 26213215 26213384 -123303653 + Lx2 LINE L1 6311 6480 -517 2 785 211 350 17 0 chr6 26214630 26214690 -123302347 - RSINE1 SINE B4 -87 78 18 2 785 26 30 0 0 chr6 26214800 26214833 -123302204 + AT_rich Low_complexity Low_complexity 1 33 0 2 785 22 0 0 0 chr6 26214856 26214878 -123302159 + AT_rich Low_complexity Low_complexity 1 22 0 2 785 3847 92 6 0 chr6 26215457 26215988 -123301049 + L1_Mus3 LINE L1 5692 6225 -413 2 785 441 0 0 0 chr6 26217184 26217233 -123299804 + (CATA)n Simple_repeat Simple_repeat 2 50 0 2 785 638 36 24 0 chr6 26218214 26218298 -123298739 + (TATG)n Simple_repeat Simple_repeat 3 88 0 2 785 2036 157 12 0 chr6 26218812 26219131 -123297906 + ORR1A2 LTR MaLR 1 323 -4 2 785 15199 19 0 0 chr6 26219875 26222335 -123294702 - L1Md_A LINE L1 0 6582 4123 2 785 10920 20 5 16 chr6 26222332 26224641 -123292396 - L1Md_A LINE L1 -3397 2486 208 2 785 30809 20 7 5 chr6 26224636 26228468 -123288569 - L1Md_A LINE L1 -1117 4766 976 2 785 8027 54 0 0 chr6 26228468 26229464 -123287573 + L1Md_T LINE L1 5587 6582 0 2 785 7192 37 17 4 chr6 26229464 26230376 -123286661 - L1Md_A LINE L1 -5604 1120 2 2 785 840 69 0 0 chr6 26230580 26230696 -123286341 + (TG)n Simple_repeat Simple_repeat 2 117 0 2 785 462 18 0 0 chr6 26231883 26231938 -123285099 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 785 389 20 20 0 chr6 26231938 26231988 -123285049 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 785 384 22 0 0 chr6 26232159 26232204 -123284833 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 785 243 263 0 0 chr6 26233040 26233097 -123283940 - L1M3 LINE L1 -555 5616 5560 2 785 664 239 150 42 chr6 26233108 26233348 -123283689 + Lx8 LINE L1 6847 7112 -361 2 785 1307 207 50 17 chr6 26233367 26233852 -123283185 + RMER6C LTR ERVK 1 614 -76 2 785 288 0 0 0 chr6 26233852 26233884 -123283153 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 785 1293 171 37 16 chr6 26233884 26233955 -123283082 + RMER6C LTR ERVK 615 684 -6 2 785 441 285 73 40 chr6 26233965 26234115 -123282922 + Lx8 LINE L1 7139 7293 -180 2 785 23 0 0 0 chr6 26234314 26234337 -123282700 + AT_rich Low_complexity Low_complexity 1 23 0 2 785 285 312 83 21 chr6 26234851 26235044 -123281993 - Lx8 LINE L1 -1137 6336 6132 2 785 25 0 0 0 chr6 26235998 26236023 -123281014 + AT_rich Low_complexity Low_complexity 1 25 0 2 785 462 364 69 20 chr6 26237337 26237640 -123279397 + MER2 DNA MER2_type 25 342 -3 2 785 589 326 131 8 chr6 26237749 26238146 -123278891 + Lx8 LINE L1 6660 7104 -592 2 785 23 54 0 0 chr6 26238183 26238220 -123278817 + AT_rich Low_complexity Low_complexity 1 37 0 2 785 369 0 0 0 chr6 26238739 26238780 -123278257 + (CATA)n Simple_repeat Simple_repeat 2 42 0 2 785 489 110 0 0 chr6 26238849 26238922 -123278115 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 785 1607 226 34 44 chr6 26240319 26240707 -123276330 - ORR1C2 LTR MaLR 0 384 1 3 785 23 54 0 0 chr6 26240959 26240996 -123276041 + AT_rich Low_complexity Low_complexity 1 37 0 3 785 1365 148 142 80 chr6 26241075 26241449 -123275588 - Lx2 LINE L1 -2 6995 6599 3 785 225 0 0 0 chr6 26241553 26241578 -123275459 + (T)n Simple_repeat Simple_repeat 1 25 0 3 785 1120 68 0 7 chr6 26241578 26241726 -123275311 - B1_Mus2 SINE Alu 0 147 1 3 785 733 73 9 9 chr6 26242410 26242520 -123274517 + (CA)n Simple_repeat Simple_repeat 1 110 0 3 785 838 0 20 0 chr6 26243250 26243352 -123273685 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 3 785 24 32 0 0 chr6 26244104 26244135 -123272902 + AT_rich Low_complexity Low_complexity 1 31 0 3 785 796 59 0 8 chr6 26244308 26244428 -123272609 + L1Md_A LINE L1 6463 6581 -1 3 785 1059 296 63 45 chr6 26245448 26245924 -123271113 - MTEb LTR MaLR -3 376 1 3 785 244 278 78 49 chr6 26246134 26246236 -123270801 - MLT2B2 LTR ERVL -410 105 1 3 785 234 0 0 0 chr6 26246716 26246742 -123270295 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 785 489 366 10 41 chr6 26247069 26247094 -123269943 - B3 SINE B2 -27 189 164 3 785 324 0 0 0 chr6 26247094 26247130 -123269907 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 785 540 366 10 41 chr6 26247130 26247298 -123269739 - B3A SINE B2 -53 163 2 3 785 2839 93 39 47 chr6 26247324 26247810 -123269227 + RLTR45 LTR ERVK 1 482 0 3 785 186 43 0 0 chr6 26248430 26248453 -123268584 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 3 785 359 281 64 90 chr6 26248642 26248830 -123268207 + B3A SINE B2 5 187 -11 3 785 420 277 18 6 chr6 26249715 26249882 -123267155 + (TA)n Simple_repeat Simple_repeat 2 170 0 3 785 218 95 0 23 chr6 26250360 26250403 -123266634 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 785 5501 114 24 50 chr6 26251294 26252220 -123264817 - RLTR13D6 LTR ERVK 0 902 1 3 785 2372 116 133 28 chr6 26252715 26253150 -123263887 - RLTR45 LTR ERVK 0 482 2 3 785 24 32 0 0 chr6 26253498 26253529 -123263508 + AT_rich Low_complexity Low_complexity 1 31 0 3 785 276 77 0 0 chr6 26253655 26253694 -123263343 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 785 1166 306 46 38 chr6 26253709 26254313 -123262724 - Lx9 LINE L1 -178 7466 6858 3 785 693 244 25 100 chr6 26254361 26254573 -123262464 + RMER19C LTR ERVK 8 295 -316 3 785 430 280 128 0 chr6 26254571 26254696 -123262341 + B1_Mur1 SINE Alu 8 148 -1 3 785 31 0 0 0 chr6 26254757 26254788 -123262249 + AT_rich Low_complexity Low_complexity 1 31 0 3 785 3259 40 2 8 chr6 26254983 26255381 -123261656 - MTA_Mm LTR MaLR 0 396 1 3 785 262 301 76 44 chr6 26255605 26255855 -123261182 - L1MC3 LINE L1 -1430 6355 6098 3 785 618 301 45 0 chr6 26255959 26256158 -123260879 - B3 SINE B2 -8 208 1 3 785 3432 142 31 45 chr6 26256552 26257105 -123259932 + L1_Mur2 LINE L1 3935 4478 -1399 3 785 4213 51 2 8 chr6 26257105 26257620 -123259417 - LTRIS3 LTR ERV1 0 512 1 3 785 3432 142 31 45 chr6 26257620 26257773 -123259264 + L1_Mur2 LINE L1 4479 4631 -1246 3 785 284 105 35 0 chr6 26257775 26257832 -123259205 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 3 785 616 165 37 0 chr6 26257832 26257941 -123259096 - Lx2B LINE L1 -340 6660 6548 3 785 1134 111 5 22 chr6 26257936 26258120 -123258917 + L1_Mur2 LINE L1 5136 5316 -561 3 785 2549 192 78 9 chr6 26258145 26258671 -123258366 - Lx2B LINE L1 -4 6996 6435 3 785 2295 246 109 13 chr6 26258648 26259167 -123257870 + Lx4B LINE L1 6288 6862 -196 3 785 201 39 0 0 chr6 26259167 26259193 -123257844 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 785 2295 246 109 13 chr6 26259193 26259372 -123257665 + Lx4B LINE L1 6863 7053 -5 3 785 245 297 67 52 chr6 26261215 26261350 -123255687 + MLT1D LTR MaLR 28 164 -463 3 785 297 322 106 11 chr6 26261435 26261614 -123255423 + MLT1D LTR MaLR 308 503 -2 3 785 644 127 9 0 chr6 26262390 26262500 -123254537 + (TTC)n Simple_repeat Simple_repeat 3 113 0 3 785 1225 106 37 0 chr6 26262593 26262781 -123254256 + B2_Mm2 SINE B2 1 195 0 3 785 198 128 0 0 chr6 26263093 26263132 -123253905 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 785 7046 96 137 4 chr6 26264742 26266355 -123250682 + Lx3_Mus LINE L1 4543 6370 -639 3 785 439 126 0 22 chr6 26266355 26266444 -123250593 + Lx3_Mus LINE L1 6892 6978 -3 3 785 2480 83 23 0 chr6 26266827 26267175 -123249862 - L1_Mus3 LINE L1 -567 6071 5716 3 785 22 0 0 0 chr6 26267330 26267352 -123249685 + AT_rich Low_complexity Low_complexity 1 22 0 3 785 21 0 0 0 chr6 26268151 26268172 -123248865 + AT_rich Low_complexity Low_complexity 1 21 0 3 785 3796 25 5 0 chr6 26268858 26269292 -123247745 - RLTR10C LTR ERVK 0 436 1 3 785 2318 93 39 17 chr6 26270867 26271229 -123245808 - L1_Mus3 LINE L1 -2 6636 6267 3 785 1830 231 38 8 chr6 26271248 26271641 -123245396 - MTC LTR MaLR 0 421 17 3 785 213 205 0 0 chr6 26271818 26271857 -123245180 + GA-rich Low_complexity Low_complexity 4 42 0 3 785 24 0 0 0 chr6 26272250 26272274 -123244763 + AT_rich Low_complexity Low_complexity 1 24 0 3 785 560 267 182 0 chr6 26272407 26272583 -123244454 - B3 SINE B2 0 216 9 3 785 22 35 0 0 chr6 26272766 26272795 -123244242 + AT_rich Low_complexity Low_complexity 1 29 0 3 785 1238 303 78 13 chr6 26273744 26274192 -123242845 + Lx7 LINE L1 6557 7033 -663 3 785 21 57 0 0 chr6 26275373 26275408 -123241629 + AT_rich Low_complexity Low_complexity 1 35 0 3 785 24 0 0 0 chr6 26275866 26275890 -123241147 + AT_rich Low_complexity Low_complexity 1 24 0 3 785 21 36 0 0 chr6 26276196 26276224 -123240813 + AT_rich Low_complexity Low_complexity 1 28 0 3 785 4699 122 13 11 chr6 26278443 26279197 -123237840 - Lx LINE L1 -9 6645 5890 3 785 650 118 25 0 chr6 26280116 26280235 -123236802 - Lx2 LINE L1 -7 6631 6510 3 785 4767 147 14 9 chr6 26280301 26281526 -123235511 - Lx2 LINE L1 -599 6398 5169 3 785 3377 132 81 2 chr6 26281526 26282081 -123234956 + Lx LINE L1 6056 6654 0 3 785 619 337 75 89 chr6 26282626 26283187 -123233850 + MER82 DNA MER2_type 99 651 -2 3 785 21 0 0 0 chr6 26283728 26283749 -123233288 + AT_rich Low_complexity Low_complexity 1 21 0 3 785 23 0 0 0 chr6 26284079 26284102 -123232935 + AT_rich Low_complexity Low_complexity 1 23 0 3 785 606 28 0 0 chr6 26284583 26284655 -123232382 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 785 282 57 19 19 chr6 26285370 26285424 -123231613 + L1Md_F2 LINE L1 6529 6582 0 3 785 241 194 0 46 chr6 26285662 26285727 -123231310 + T-rich Low_complexity Low_complexity 4 65 0 3 785 200 175 16 0 chr6 26286050 26286113 -123230924 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 785 448 333 224 6 chr6 26286117 26286461 -123230576 - Lx8 LINE L1 -147 7326 6908 3 785 24 32 0 0 chr6 26287316 26287347 -123229690 + AT_rich Low_complexity Low_complexity 1 31 0 3 785 295 284 108 52 chr6 26288099 26288311 -123228726 - CYRA11_Mm Unknown Y-chromosome -222 395 172 3 785 826 230 6 6 chr6 26288133 26288312 -123228725 + URR1B DNA MER1_type 47 225 0 3 785 207 0 0 0 chr6 26288522 26288545 -123228492 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 785 3487 224 73 3 chr6 26288652 26288754 -123228283 + Lx5 LINE L1 6074 6206 -844 3 785 333 0 0 0 chr6 26288754 26288791 -123228246 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 785 3487 224 73 3 chr6 26288791 26289463 -123227574 + Lx5 LINE L1 6207 6903 -147 3 785 23 0 0 0 chr6 26290074 26290097 -123226940 + AT_rich Low_complexity Low_complexity 1 23 0 3 785 22 35 0 0 chr6 26290415 26290444 -123226593 + AT_rich Low_complexity Low_complexity 1 29 0 3 785 238 362 18 37 chr6 26291841 26291950 -123225087 + RSINE1 SINE B4 32 138 -27 3 785 245 318 45 0 chr6 26292582 26292670 -123224367 - B1F SINE Alu 0 149 58 3 785 4009 108 19 2 chr6 26292933 26293517 -123223520 - L1_Mus4 LINE L1 -6 6630 6037 3 785 3229 106 0 0 chr6 26293523 26293976 -123223061 + L1_Mus4 LINE L1 5587 6039 -597 3 785 327 25 0 0 chr6 26294010 26294050 -123222987 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 3 785 282 251 64 29 chr6 26294478 26294650 -123222387 - L1M4b LINE L1 -5652 1682 1505 3 785 254 346 21 63 chr6 26294957 26295099 -123221938 - Lx8 LINE L1 -338 7135 7000 3 785 324 292 20 54 chr6 26295135 26295319 -123221718 - L1M4b LINE L1 -5401 1503 1314 3 785 480 86 0 0 chr6 26295908 26295978 -123221059 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 785 251 293 12 0 chr6 26297252 26297334 -123219703 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 785 5063 109 46 46 chr6 26297546 26298421 -123218616 + Lx3_Mus LINE L1 5713 6587 -422 3 785 4306 101 63 31 chr6 26298433 26299136 -123217901 + L1_Mus3 LINE L1 5919 6638 0 3 785 2397 134 26 24 chr6 26299136 26299555 -123217482 + Lx3_Mus LINE L1 6559 6978 -3 3 785 848 118 7 0 chr6 26299568 26299704 -123217333 + (GGAA)n Simple_repeat Simple_repeat 3 139 0 3 785 33 43 0 0 chr6 26299761 26299808 -123217229 + AT_rich Low_complexity Low_complexity 1 47 0 3 785 936 89 0 56 chr6 26300173 26300315 -123216722 + B1_Mus1 SINE Alu 5 138 -10 3 785 322 21 0 41 chr6 26300315 26300364 -123216673 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 3 785 1115 332 150 26 chr6 26300619 26301728 -123215309 - Lx8 LINE L1 -603 6870 5625 3 785 491 321 48 53 chr6 26301736 26302151 -123214886 + Lx8 LINE L1 5204 5616 -264 3 785 22 0 0 0 chr6 26303081 26303103 -123213934 + AT_rich Low_complexity Low_complexity 1 22 0 3 785 337 350 152 68 chr6 26304735 26304822 -123212215 + B4A SINE B4 29 117 -175 3 785 2757 73 8 3 chr6 26304822 26305194 -123211843 - L1_Mus2 LINE L1 0 6566 6193 3 785 337 350 152 68 chr6 26305194 26305342 -123211695 + B4A SINE B4 118 284 -8 3 785 21 36 0 0 chr6 26306100 26306128 -123210909 + AT_rich Low_complexity Low_complexity 1 28 0 3 785 1929 169 28 3 chr6 26306407 26306769 -123210268 + ORR1B1 LTR MaLR 1 386 -8 3 785 22 35 0 0 chr6 26306971 26307000 -123210037 + AT_rich Low_complexity Low_complexity 1 29 0 3 785 275 310 95 20 chr6 26307293 26307441 -123209596 + Lx8 LINE L1 6966 7124 -349 3 785 2400 230 42 102 chr6 26307767 26308545 -123208492 - RMER1B Other Other -10 1056 8 3 785 315 273 45 18 chr6 26308555 26308667 -123208370 - L1M2 LINE L1 -689 5611 5497 3 785 1724 252 12 12 chr6 26309935 26310361 -123206676 - Lx2B LINE L1 -2 6998 6573 4 785 24 67 0 0 chr6 26312153 26312198 -123204839 + AT_rich Low_complexity Low_complexity 1 45 0 4 785 3344 161 28 2 chr6 26312705 26313282 -123203755 - Lx2 LINE L1 -2 6995 6404 4 785 1692 112 60 0 chr6 26313282 26313550 -123203487 + Lx2 LINE L1 5648 5931 -1066 4 785 1112 75 0 13 chr6 26313550 26313699 -123203338 + B1_Mm SINE Alu 1 147 0 4 785 2139 193 32 32 chr6 26313699 26314261 -123202776 + Lx2 LINE L1 5910 6398 -660 4 785 297 0 0 0 chr6 26314605 26314638 -123202399 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 785 1944 302 24 22 chr6 26315031 26315655 -123201382 - Lx8 LINE L1 -492 6981 6357 4 785 242 242 15 0 chr6 26315744 26315810 -123201227 - L1_Rod LINE L1 -74 5773 5707 4 785 239 299 0 13 chr6 26315856 26315934 -123201103 + MLT1B LTR MaLR 65 141 -249 4 785 269 333 53 0 chr6 26316088 26316202 -123200835 - Lx8 LINE L1 -181 7292 7173 4 785 213 390 0 0 chr6 26316204 26316263 -123200774 - PB1D9 SINE Alu -61 59 1 4 785 225 242 0 101 chr6 26316402 26316471 -123200566 + MLT1B LTR MaLR 174 235 -155 4 785 24 32 0 0 chr6 26317017 26317048 -123199989 + AT_rich Low_complexity Low_complexity 1 31 0 4 785 1250 163 108 0 chr6 26317050 26317301 -123199736 - Lx LINE L1 -7 6647 6370 4 785 953 142 17 17 chr6 26317301 26317473 -123199564 + B2_Mm2 SINE B2 12 183 -12 4 785 599 351 10 15 chr6 26317550 26317755 -123199282 + ID_B1 SINE B4 7 210 -14 4 785 414 0 0 0 chr6 26317849 26317895 -123199142 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 785 441 0 0 0 chr6 26317895 26317943 -123199094 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 785 33 25 0 0 chr6 26318004 26318044 -123198993 + AT_rich Low_complexity Low_complexity 1 40 0 4 785 243 122 0 0 chr6 26319332 26319381 -123197656 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 785 351 0 0 0 chr6 26321056 26321095 -123195942 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 785 260 191 0 29 chr6 26321135 26321205 -123195832 + GA-rich Low_complexity Low_complexity 3 70 0 4 785 291 85 0 0 chr6 26321297 26321344 -123195693 + (TTAG)n Simple_repeat Simple_repeat 3 49 0 4 785 1050 86 0 0 chr6 26321344 26321483 -123195554 - B1_Mm SINE Alu -8 139 1 4 785 8216 80 0 4 chr6 26321530 26322641 -123194396 + L1Md_F2 LINE L1 4480 5586 -297 4 785 7586 64 15 2 chr6 26322644 26323624 -123193413 + L1Md_F2 LINE L1 5590 6582 0 4 785 21 0 0 0 chr6 26324148 26324169 -123192868 + AT_rich Low_complexity Low_complexity 1 21 0 4 785 428 341 31 0 chr6 26324723 26324852 -123192185 - ID_B1 SINE B4 -1 223 91 4 785 21 0 0 0 chr6 26325628 26325649 -123191388 + AT_rich Low_complexity Low_complexity 1 21 0 4 785 561 156 9 35 chr6 26325815 26325928 -123191109 - L1_Mus3 LINE L1 -267 5616 5507 4 785 6533 91 47 4 chr6 26325923 26326874 -123190163 + L1_Mus3 LINE L1 5647 6638 0 4 785 441 0 0 0 chr6 26327114 26327163 -123189874 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 785 865 114 20 7 chr6 26327284 26327434 -123189603 - L1_Mus3 LINE L1 -41 6597 6446 4 785 2046 280 94 1 chr6 26328082 26328732 -123188305 - Lx6 LINE L1 -725 6735 6026 4 785 2261 229 91 25 chr6 26329417 26330108 -123186929 - RMER19A LTR ERVK 0 737 1 4 785 920 95 0 7 chr6 26330338 26330476 -123186561 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 4 785 262 328 8 48 chr6 26330488 26330613 -123186424 - ID_B1 SINE B4 0 224 105 4 785 1075 64 0 0 chr6 26330844 26330985 -123186052 + B1_Mm SINE Alu 6 146 -1 4 785 438 303 108 108 chr6 26331042 26331264 -123185773 + MTEb LTR MaLR 1 222 -157 4 785 384 178 0 0 chr6 26331295 26331402 -123185635 + CT-rich Low_complexity Low_complexity 1 107 0 4 785 341 252 74 30 chr6 26331402 26331537 -123185500 + MTEb LTR MaLR 201 341 -38 4 785 22 70 0 0 chr6 26331600 26331643 -123185394 + AT_rich Low_complexity Low_complexity 1 43 0 4 785 21 89 0 0 chr6 26331949 26332005 -123185032 + AT_rich Low_complexity Low_complexity 1 56 0 4 785 329 149 15 0 chr6 26333035 26333102 -123183935 + GA-rich Low_complexity Low_complexity 3 70 0 4 785 1361 190 0 0 chr6 26333599 26333852 -123183185 - RLTR11A2 LTR ERVK 0 527 275 4 785 2566 134 46 7 chr6 26333858 26334271 -123182766 + MT2B2 LTR ERVL 16 444 -140 4 785 1247 231 41 7 chr6 26334288 26334558 -123182479 - RLTR11A2 LTR ERVK -248 279 1 4 785 3316 211 81 23 chr6 26334576 26335506 -123181531 - MYSERV-int LTR ERVK -15 6535 5552 4 785 822 11 0 0 chr6 26335733 26335828 -123181209 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 4 785 793 248 55 149 chr6 26336228 26336645 -123180392 + MTE2a LTR MaLR 2 379 0 4 785 1324 77 6 0 chr6 26337384 26337565 -123179472 - L1_Mus2 LINE L1 0 6566 6385 4 785 2885 42 11 0 chr6 26337785 26338146 -123178891 + MTA_Mm LTR MaLR 32 396 0 4 785 605 359 31 16 chr6 26338147 26338402 -123178635 - B4 SINE B4 -18 274 16 4 785 270 0 0 0 chr6 26338592 26338622 -123178415 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4 785 1831 72 0 12 chr6 26338622 26338862 -123178175 - L1_Mus2 LINE L1 -10 6556 6320 4 785 1454 277 99 94 chr6 26338912 26339120 -123177917 + L1Md_F LINE L1 219 400 -6236 4 785 7391 53 2 1 chr6 26339120 26340012 -123177025 + RLTR13B1 LTR ERVK 1 893 0 4 785 2980 204 59 25 chr6 26340012 26340824 -123176213 + L1Md_F LINE L1 401 1252 -5730 4 785 480 139 0 0 chr6 26341214 26341293 -123175744 + (TC)n Simple_repeat Simple_repeat 2 80 0 4 785 1169 179 49 0 chr6 26341313 26341537 -123175500 - Lx3C LINE L1 -7 6969 6735 4 785 2414 72 25 0 chr6 26342353 26342674 -123174363 + L1_Mus3 LINE L1 6307 6635 -3 4 785 336 45 0 0 chr6 26343145 26343174 -123173863 + (T)n Simple_repeat Simple_repeat 1 29 0 4 785 1213 47 0 0 chr6 26343174 26343322 -123173715 - B1_Mus1 SINE Alu 0 148 1 4 785 336 45 0 0 chr6 26343322 26343336 -123173701 + (T)n Simple_repeat Simple_repeat 1 14 0 4 785 2267 29 0 4 chr6 26343336 26343615 -123173422 - IAPLTR2b LTR ERVK -49 278 1 4 785 3796 80 17 10 chr6 26343617 26344136 -123172901 - IAPEz-int LTR ERVK -2 6479 5957 4 785 1008 95 5 1 chr6 26344140 26344283 -123172754 - IAPEz-int LTR ERVK -6275 206 26 4 785 784 81 9 9 chr6 26344284 26344396 -123172641 - IAPLTR2b LTR ERVK -3 324 213 4 785 387 0 0 0 chr6 26344466 26344509 -123172528 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 785 793 69 46 0 chr6 26344644 26344775 -123172262 - L1_Mus3 LINE L1 -8 6630 6494 4 785 238 348 35 9 chr6 26344781 26344894 -123172143 - Lx7 LINE L1 -1967 5729 5614 4 786 3585 194 138 16 chr6 26346164 26346930 -123170107 + RMER13A LTR ERVK 1 860 0 4 786 513 313 18 18 chr6 26347054 26347220 -123169817 + B3A SINE B2 33 198 0 4 786 402 265 0 0 chr6 26347223 26347340 -123169697 + (CATATA)n Simple_repeat Simple_repeat 4 120 0 4 786 24 0 0 0 chr6 26347465 26347489 -123169548 + AT_rich Low_complexity Low_complexity 1 24 0 4 786 956 134 32 38 chr6 26347490 26347676 -123169361 - B2_Mm2 SINE B2 -9 186 2 4 786 1025 174 18 0 chr6 26349473 26349692 -123167345 + L1_Mur3 LINE L1 1426 1648 -4232 4 786 38 61 0 0 chr6 26350576 26350642 -123166395 + AT_rich Low_complexity Low_complexity 1 66 0 4 786 864 124 14 21 chr6 26350642 26350782 -123166255 - RLTR9C LTR ERVK 0 393 255 4 786 7654 66 4 7 chr6 26350793 26351786 -123165251 - L1Md_F2 LINE L1 -6 6576 5587 4 786 4699 73 10 2 chr6 26351791 26352412 -123164625 + L1Md_F2 LINE L1 4905 5530 -353 4 786 736 177 253 27 chr6 26352412 26352633 -123164404 - RLTR9C LTR ERVK -138 271 1 4 786 866 29 9 0 chr6 26352656 26352761 -123164276 - L1Md_F2 LINE L1 -699 5883 5778 4 786 5399 53 10 1 chr6 26352761 26353440 -123163597 + L1Md_F2 LINE L1 5888 6572 -10 4 786 25 31 0 0 chr6 26353621 26353653 -123163384 + AT_rich Low_complexity Low_complexity 1 32 0 4 786 227 368 11 44 chr6 26353743 26353834 -123163203 - MLT1E LTR MaLR -138 515 428 4 786 775 297 84 0 chr6 26353848 26354181 -123162856 + ERVL-int LTR ERVL 5112 5472 -285 4 786 543 348 0 0 chr6 26354420 26354601 -123162436 + MLT2B2 LTR ERVL 1 181 -334 4 786 1917 63 16 8 chr6 26354658 26354913 -123162124 - L1Md_F2 LINE L1 -132 6450 6194 4 786 325 309 73 6 chr6 26354925 26355104 -123161933 - L1M2 LINE L1 -771 5372 5182 4 786 299 326 33 0 chr6 26355434 26355526 -123161511 - Lx8 LINE L1 -155 7318 7224 4 786 403 314 124 26 chr6 26355530 26355756 -123161281 - Lx8 LINE L1 -543 6930 6683 4 786 423 0 0 0 chr6 26355878 26355925 -123161112 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 4 786 37 0 0 0 chr6 26356473 26356510 -123160527 + AT_rich Low_complexity Low_complexity 1 37 0 4 786 258 386 84 49 chr6 26356950 26357236 -123159801 + MLT1A0 LTR MaLR 2 297 -68 4 786 28 61 0 0 chr6 26358821 26358870 -123158167 + AT_rich Low_complexity Low_complexity 1 49 0 4 786 865 245 88 24 chr6 26358870 26359121 -123157916 - Lx6 LINE L1 -26 7434 7168 4 786 371 277 106 0 chr6 26359440 26359534 -123157503 + PB1D7 SINE Alu 11 114 -6 4 786 414 0 0 0 chr6 26359619 26359665 -123157372 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 786 392 318 143 29 chr6 26360878 26361228 -123155809 - L1MC4 LINE L1 -387 7655 7266 4 786 25 0 0 0 chr6 26361373 26361398 -123155639 + AT_rich Low_complexity Low_complexity 1 25 0 4 786 393 86 0 0 chr6 26361469 26361527 -123155510 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 786 336 83 0 0 chr6 26361527 26361574 -123155463 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 786 541 365 26 15 chr6 26362016 26362283 -123154754 - Lx8 LINE L1 -227 7246 6977 4 786 1485 186 50 17 chr6 26362276 26362576 -123154461 - Lx4B LINE L1 -244 6814 6505 4 786 343 181 0 0 chr6 26363820 26363892 -123153145 - Lx6 LINE L1 -2 7458 7387 4 786 21 0 0 0 chr6 26364738 26364759 -123152278 + AT_rich Low_complexity Low_complexity 1 21 0 4 786 197 33 33 0 chr6 26364828 26364858 -123152179 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 786 240 35 0 0 chr6 26365764 26365793 -123151244 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 786 225 0 0 0 chr6 26365793 26365817 -123151220 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 786 1568 212 54 66 chr6 26365833 26366409 -123150628 + L1_Mur3 LINE L1 1484 2052 -3828 4 786 438 20 0 0 chr6 26366411 26366462 -123150575 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 786 516 32 0 0 chr6 26366462 26366523 -123150514 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 786 695 85 0 0 chr6 26366540 26366646 -123150391 + L1_Mus1 LINE L1 6458 6563 -4 5 786 565 249 25 1 chr6 26366779 26366973 -123150064 + L1_Mur3 LINE L1 2045 2244 -3603 4 786 4787 92 16 1 chr6 26366969 26367656 -123149381 - L1Md_F2 LINE L1 -1668 4215 3519 5 786 10376 66 2 2 chr6 26367634 26368992 -123148045 + L1Md_F2 LINE L1 4227 5584 -299 5 786 7395 68 10 6 chr6 26368994 26369984 -123147053 + L1Md_F2 LINE L1 5587 6580 -2 5 786 227 286 18 0 chr6 26370002 26370058 -123146979 - Lx9 LINE L1 -359 7285 7229 5 786 396 40 0 0 chr6 26370177 26370227 -123146810 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 786 22 56 0 0 chr6 26370272 26370308 -123146729 + AT_rich Low_complexity Low_complexity 1 36 0 5 786 21 36 0 0 chr6 26370649 26370677 -123146360 + AT_rich Low_complexity Low_complexity 1 28 0 5 786 282 308 9 27 chr6 26372061 26372171 -123144866 - MLT1D LTR MaLR -9 496 389 5 786 21 0 0 0 chr6 26372291 26372312 -123144725 + AT_rich Low_complexity Low_complexity 1 21 0 5 786 622 114 0 24 chr6 26372312 26372438 -123144599 - L1Md_F2 LINE L1 0 6582 6460 5 786 11452 55 1 0 chr6 26372438 26374120 -123142917 - L1Md_F2 LINE L1 -452 6130 4448 5 786 603 117 0 0 chr6 26374392 26374486 -123142551 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 786 188 103 51 0 chr6 26375321 26375360 -123141677 + T-rich Low_complexity Low_complexity 5 45 0 5 786 805 311 51 34 chr6 26375514 26375864 -123141173 + Lx9 LINE L1 6821 7176 -468 5 786 526 85 0 0 chr6 26375916 26375998 -123141039 + L1Md_F2 LINE L1 6482 6563 -19 5 786 360 0 0 0 chr6 26376000 26376040 -123140997 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5 786 300 292 28 19 chr6 26376203 26376311 -123140726 + Lx9 LINE L1 7341 7449 -195 5 786 765 114 0 0 chr6 26376318 26376441 -123140596 + (TG)n Simple_repeat Simple_repeat 1 123 0 5 786 801 362 106 22 chr6 26377226 26377946 -123139091 - Lx8 LINE L1 -234 7239 6460 5 786 254 269 0 0 chr6 26378053 26378120 -123138917 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 5 786 633 119 0 0 chr6 26378314 26378415 -123138622 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 5 786 3863 234 186 9 chr6 26378449 26379731 -123137306 - L1_Mur3 LINE L1 -4388 1492 20 5 786 414 0 0 0 chr6 26379731 26379777 -123137260 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 786 1399 247 231 20 chr6 26379777 26379927 -123137110 - L1_Mur3 LINE L1 -7524 204 51 5 786 293 302 0 20 chr6 26379971 26380069 -123136968 + Lx6 LINE L1 7103 7198 -262 5 786 279 54 0 0 chr6 26380074 26380111 -123136926 + (TTATA)n Simple_repeat Simple_repeat 4 40 0 5 786 488 274 66 20 chr6 26380880 26381220 -123135817 + L1M3 LINE L1 3406 3762 -2381 5 786 724 63 18 0 chr6 26381370 26381481 -123135556 + (TC)n Simple_repeat Simple_repeat 2 114 0 5 786 247 213 40 13 chr6 26381738 26381814 -123135223 + CT-rich Low_complexity Low_complexity 5 82 0 5 786 6040 187 30 15 chr6 26382853 26384074 -123132963 + Lx2 LINE L1 5757 6996 -1 5 786 222 150 0 0 chr6 26384111 26384151 -123132886 + (GAA)n Simple_repeat Simple_repeat 1 40 0 5 786 4059 202 25 51 chr6 26384197 26384526 -123132511 + Lx5 LINE L1 4329 4632 -1245 5 786 834 39 0 0 chr6 26384526 26384628 -123132409 + (GAA)n Simple_repeat Simple_repeat 3 104 0 5 786 4059 202 25 51 chr6 26384628 26385263 -123131774 + Lx5 LINE L1 4633 5264 -613 5 786 382 149 73 21 chr6 26385263 26385359 -123131678 + Lx LINE L1 6547 6647 -7 5 786 4059 202 25 51 chr6 26385359 26385418 -123131619 + Lx5 LINE L1 5265 5327 -550 5 786 3327 180 127 69 chr6 26385428 26386269 -123130768 - RMER19B LTR ERVK -12 890 1 5 786 6040 209 48 25 chr6 26386269 26387949 -123129088 + Lx5 LINE L1 5321 7047 -3 5 786 238 204 0 0 chr6 26388670 26388714 -123128323 - U2 snRNA snRNA -144 44 1 5 786 300 102 0 0 chr6 26389089 26389138 -123127899 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 5 786 234 62 0 0 chr6 26392548 26392580 -123124457 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 786 236 308 75 21 chr6 26392640 26392733 -123124304 - B3 SINE B2 -58 140 43 5 786 24 0 0 0 chr6 26393085 26393109 -123123928 + AT_rich Low_complexity Low_complexity 1 24 0 5 786 253 204 0 0 chr6 26394972 26395026 -123122011 - ID4 SINE ID -27 56 3 5 786 252 338 44 15 chr6 26395112 26395247 -123121790 + L2a LINE L2 3103 3241 -185 5 786 760 191 14 7 chr6 26396236 26396384 -123120653 + B1_Mur4 SINE Alu 1 149 -1 5 786 234 0 0 0 chr6 26396542 26396568 -123120469 + (A)n Simple_repeat Simple_repeat 1 26 0 5 786 415 272 45 36 chr6 26396884 26397105 -123119932 - L1_Mur3 LINE L1 -460 5420 5198 5 786 352 289 35 24 chr6 26397119 26397289 -123119748 - L1_Mur3 LINE L1 -1090 4790 4619 5 786 682 111 0 100 chr6 26398072 26398272 -123118765 + CT-rich Low_complexity Low_complexity 1 180 0 5 786 207 0 0 0 chr6 26398272 26398295 -123118742 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 786 273 326 28 77 chr6 26398426 26398569 -123118468 - B4 SINE B4 -148 144 9 5 786 322 336 29 36 chr6 26398616 26398755 -123118282 + B1F SINE Alu 7 144 -5 5 786 203 273 0 0 chr6 26398787 26398831 -123118206 + (TATG)n Simple_repeat Simple_repeat 2 45 0 5 786 252 391 16 11 chr6 26399214 26399400 -123117637 - L2 LINE L2 -510 2909 2723 5 786 194 231 15 0 chr6 26399856 26399921 -123117116 + GA-rich Low_complexity Low_complexity 1 66 0 5 786 4007 53 6 2 chr6 26402896 26403403 -123113634 - L1Md_F2 LINE L1 -1 6581 6073 5 786 302 45 0 22 chr6 26403498 26403543 -123113494 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 5 786 235 256 26 105 chr6 26403579 26403732 -123113305 - Lx8 LINE L1 -51 7422 7282 5 786 896 82 15 0 chr6 26404148 26404283 -123112754 - L1_Mus2 LINE L1 0 6566 6430 5 786 4075 73 2 0 chr6 26404283 26404817 -123112220 + L1_Mus2 LINE L1 5737 6271 -295 5 786 708 45 0 0 chr6 26404928 26405016 -123112021 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 786 23 86 0 0 chr6 26405138 26405196 -123111841 + AT_rich Low_complexity Low_complexity 1 58 0 5 786 486 0 0 0 chr6 26405581 26405635 -123111402 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 786 278 161 0 22 chr6 26408064 26408153 -123108884 + (CAGAGA)n Simple_repeat Simple_repeat 2 88 0 5 786 232 340 81 34 chr6 26408156 26408305 -123108732 - RSINE1 SINE B4 -8 157 2 5 786 189 121 0 0 chr6 26408361 26408394 -123108643 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 5 786 6427 261 49 44 chr6 26408406 26410289 -123106748 - Lx7 LINE L1 0 7696 5788 5 786 439 277 135 0 chr6 26410289 26410430 -123106607 - U1 snRNA snRNA -1 164 5 5 786 6427 262 54 93 chr6 26410430 26410996 -123106041 - Lx7 LINE L1 -1909 5787 5237 5 786 180 77 0 0 chr6 26410996 26411022 -123106015 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 786 3329 264 56 122 chr6 26411022 26412728 -123104309 - Lx7 LINE L1 -644 5236 3664 5 786 2292 226 65 16 chr6 26412728 26413404 -123103633 - Lx7 LINE L1 -2903 2977 2269 5 786 2146 232 66 8 chr6 26413391 26413812 -123103225 - Lx7 LINE L1 -4012 1868 1413 5 786 624 22 0 32 chr6 26413812 26413905 -123103132 + (TA)n Simple_repeat Simple_repeat 1 90 0 5 786 2146 264 78 7 chr6 26413905 26414814 -123102223 - Lx7 LINE L1 -4468 1412 442 5 786 268 349 35 0 chr6 26414829 26414915 -123102122 - B1F SINE Alu -7 142 54 5 786 3231 51 2 5 chr6 26415016 26415413 -123101624 + MTA_Mm LTR MaLR 1 396 0 5 786 186 43 0 0 chr6 26416955 26416978 -123100059 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 786 211 136 0 22 chr6 26417788 26417833 -123099204 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 5 786 225 0 0 0 chr6 26417991 26418016 -123099021 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 786 516 32 0 0 chr6 26418054 26418116 -123098921 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 786 1053 283 90 45 chr6 26418224 26419075 -123097962 - RMER17B LTR ERVK -100 808 1 5 786 182 135 39 39 chr6 26419606 26419639 -123097398 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 5 786 1142 68 7 0 chr6 26419639 26419785 -123097252 + B1_Mus1 SINE Alu 2 148 0 5 786 182 135 39 39 chr6 26419785 26419828 -123097209 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 5 786 227 235 160 0 chr6 26420346 26420465 -123096572 + Lx9 LINE L1 7505 7642 -2 5 786 369 0 0 0 chr6 26420498 26420539 -123096498 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 786 3659 195 63 9 chr6 26420947 26421753 -123095284 + Lx3A LINE L1 19 868 -6116 5 786 24712 98 17 13 chr6 26421747 26423339 -123093698 + Lx3A LINE L1 2072 3657 -2229 5 786 186 0 57 29 chr6 26423339 26423374 -123093663 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 5 786 24712 103 19 13 chr6 26423374 26426143 -123090894 + Lx3A LINE L1 3658 6452 -529 5 786 2972 60 10 3 chr6 26426143 26426530 -123090507 + RLTR10 LTR ERVK 1 390 0 5 786 8570 126 24 12 chr6 26426530 26427043 -123089994 + Lx3A LINE L1 6453 6973 -8 5 786 180 77 0 0 chr6 26427050 26427076 -123089961 + (A)n Simple_repeat Simple_repeat 1 26 0 5 786 25 51 0 0 chr6 26427295 26427334 -123089703 + AT_rich Low_complexity Low_complexity 1 39 0 5 786 29 47 0 0 chr6 26427379 26427422 -123089615 + AT_rich Low_complexity Low_complexity 1 43 0 5 786 21 0 0 0 chr6 26427446 26427467 -123089570 + AT_rich Low_complexity Low_complexity 1 21 0 5 786 189 250 127 38 chr6 26427675 26427754 -123089283 + MIRb SINE MIR 37 122 -146 5 786 1010 279 72 47 chr6 26427782 26428379 -123088658 + L1MA6 LINE L1 5393 6004 -296 5 786 238 26 25 25 chr6 26428586 26428626 -123088411 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 5 786 825 186 20 143 chr6 26428711 26428956 -123088081 + RLTR25B LTR ERVK 1 215 -813 5 786 1127 96 0 6 chr6 26428957 26429125 -123087912 + (GGAGAA)n Simple_repeat Simple_repeat 6 172 0 5 786 663 278 30 25 chr6 26429135 26429338 -123087699 + Lx5 LINE L1 6488 6691 -359 5 786 5507 111 29 6 chr6 26429464 26430292 -123086745 - L1_Mus4 LINE L1 -6 6630 5784 5 786 633 218 0 0 chr6 26430295 26430419 -123086618 - L1_Mm LINE L1 -241 5642 5519 5 786 477 226 24 16 chr6 26430552 26430678 -123086359 - ORR1B2 LTR MaLR 0 367 241 5 786 429 20 0 0 chr6 26430734 26430784 -123086253 + (T)n Simple_repeat Simple_repeat 1 50 0 5 786 7722 83 0 3 chr6 26430797 26432476 -123084561 - L1_Mus1 LINE L1 0 6567 4893 5 786 309 149 0 0 chr6 26432880 26432947 -123084090 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 786 212 122 0 24 chr6 26433035 26433077 -123083960 + (GAA)n Simple_repeat Simple_repeat 2 42 0 5 786 24 32 0 0 chr6 26435691 26435722 -123081315 + AT_rich Low_complexity Low_complexity 1 31 0 5 786 327 49 0 0 chr6 26435734 26435775 -123081262 + (TTA)n Simple_repeat Simple_repeat 1 41 0 5 786 282 73 0 0 chr6 26435776 26435817 -123081220 + (TAG)n Simple_repeat Simple_repeat 1 41 0 5 786 327 198 42 0 chr6 26435834 26435930 -123081107 - Lx3B LINE L1 -7 6966 6867 5 786 342 0 0 0 chr6 26435933 26435971 -123081066 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 786 546 16 0 0 chr6 26435971 26436033 -123081004 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 786 6447 146 9 9 chr6 26436043 26437454 -123079583 - Lx3B LINE L1 -223 6750 5535 5 786 670 320 39 65 chr6 26437542 26437976 -123079061 + L1_Mur3 LINE L1 4699 5121 -759 6 786 782 289 94 11 chr6 26438110 26438386 -123078651 - MTD LTR MaLR -4 415 117 6 786 213 222 0 18 chr6 26438585 26438640 -123078397 + GA-rich Low_complexity Low_complexity 2 55 0 6 786 329 245 135 32 chr6 26438763 26438919 -123078118 + L1M LINE L1 5255 5426 -816 6 786 1339 235 54 11 chr6 26439067 26439416 -123077621 + ORR1D1 LTR MaLR 3 366 -8 6 786 27 62 0 0 chr6 26440038 26440086 -123076951 + AT_rich Low_complexity Low_complexity 1 48 0 6 786 207 350 130 0 chr6 26440994 26441094 -123075943 + MIRb SINE MIR 46 158 -110 6 786 523 241 15 72 chr6 26442198 26442454 -123074583 + Lx5 LINE L1 871 1099 -6629 6 786 438 36 0 0 chr6 26442455 26442511 -123074526 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 786 8596 217 65 53 chr6 26442516 26444496 -123072541 + Lx5 LINE L1 2061 4230 -2820 6 786 647 296 107 25 chr6 26444496 26444815 -123072222 - RLTR15 LTR ERVK -14 345 1 6 786 8596 217 65 53 chr6 26444815 26446583 -123070454 + Lx5 LINE L1 4231 6169 -881 6 786 1888 112 85 3 chr6 26446583 26446889 -123070148 + IAPEY3_LTR LTR ERVK 1 331 -1 6 786 4986 248 68 18 chr6 26446889 26447743 -123069294 + Lx5 LINE L1 6170 7050 0 6 786 25 51 0 0 chr6 26447778 26447817 -123069220 + AT_rich Low_complexity Low_complexity 1 39 0 6 786 465 110 0 0 chr6 26448385 26448458 -123068579 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 786 1157 194 35 12 chr6 26449208 26449463 -123067574 - Lx3B LINE L1 0 6973 6713 6 786 269 311 203 23 chr6 26449496 26449762 -123067275 + Lx8 LINE L1 7126 7439 -34 6 786 180 0 0 0 chr6 26449996 26450016 -123067021 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 786 22 0 0 0 chr6 26450546 26450568 -123066469 + AT_rich Low_complexity Low_complexity 1 22 0 6 786 3217 46 5 2 chr6 26451435 26451830 -123065207 + MTA_Mm LTR MaLR 1 396 0 6 786 21 0 0 0 chr6 26451923 26451944 -123065093 + AT_rich Low_complexity Low_complexity 1 21 0 6 786 525 274 37 116 chr6 26451945 26452403 -123064634 - Lx9 LINE L1 -20 7624 7203 6 786 7815 109 15 14 chr6 26452399 26453658 -123063379 + MusHAL1 LINE L1 634 1893 -819 6 786 9045 112 6 8 chr6 26453668 26455241 -123061796 - L1VL1 LINE L1 -3243 2643 996 6 786 37639 45 0 3 chr6 26455242 26461439 -123055598 - L1Md_T LINE L1 0 6585 309 6 786 1628 230 45 33 chr6 26461423 26461622 -123055415 - L1Md_T LINE L1 -5477 1142 950 6 786 2602 82 0 14 chr6 26461622 26461992 -123055045 + L1Md_F2 LINE L1 6213 6577 -5 6 786 660 59 0 0 chr6 26461993 26462078 -123054959 + (TA)n Simple_repeat Simple_repeat 2 86 0 6 786 1628 256 123 58 chr6 26462078 26462688 -123054349 - L1Md_T LINE L1 -5672 969 276 6 786 7037 130 43 4 chr6 26462691 26464288 -123052749 + L1_Mus3 LINE L1 4922 6614 -24 6 786 2229 57 0 0 chr6 26464288 26464569 -123052468 + L1Md_F2 LINE L1 6290 6570 -12 6 786 7037 108 6 6 chr6 26464569 26464590 -123052447 + L1_Mus3 LINE L1 6615 6634 -4 6 786 315 0 0 0 chr6 26465318 26465353 -123051684 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 786 679 297 78 52 chr6 26465399 26465750 -123051287 - MLT2B2 LTR ERVL -177 379 3 6 786 525 296 45 26 chr6 26466058 26466214 -123050823 + B3 SINE B2 1 159 -57 6 786 291 265 0 113 chr6 26466261 26466376 -123050661 - MLT1D LTR MaLR -352 153 52 6 786 3025 97 0 2 chr6 26466521 26466943 -123050094 + L1_Mus1 LINE L1 6145 6565 -2 6 786 414 276 40 24 chr6 26467149 26467275 -123049762 + RMER5 LTR ERV1 3 130 -404 6 786 258 169 12 35 chr6 26467295 26467381 -123049656 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 6 786 8470 102 47 43 chr6 26467399 26467914 -123049123 - Lx3_Mus LINE L1 0 7009 6454 6 786 3137 58 2 5 chr6 26467914 26468311 -123048726 - MTA_Mm LTR MaLR 0 396 1 6 786 8470 98 28 17 chr6 26468311 26469930 -123047107 - Lx3_Mus LINE L1 -556 6453 4859 6 786 3400 103 32 13 chr6 26469929 26470459 -123046578 + Lx3_Mus LINE L1 4323 4862 -1024 6 786 211 53 105 0 chr6 26470904 26470942 -123046095 + (TATAA)n Simple_repeat Simple_repeat 2 43 0 6 786 6369 60 26 25 chr6 26471775 26472645 -123044392 - L1Md_F2 LINE L1 -1 6581 5711 6 786 857 233 46 10 chr6 26473086 26473281 -123043756 - B3 SINE B2 -14 202 1 6 786 22 80 0 0 chr6 26473486 26473536 -123043501 + AT_rich Low_complexity Low_complexity 1 50 0 6 786 245 190 0 17 chr6 26475055 26475114 -123041923 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 6 787 397 238 49 0 chr6 26476671 26476793 -123040244 + L1_Mur3 LINE L1 4663 4790 -1090 6 787 541 282 34 53 chr6 26476794 26477000 -123040037 + RLTR15 LTR ERVK 2 203 -156 6 787 2609 229 149 6 chr6 26477518 26478135 -123038902 + Lx2 LINE L1 6176 6866 -131 6 787 687 129 0 0 chr6 26478135 26478267 -123038770 + (TG)n Simple_repeat Simple_repeat 1 132 0 6 787 2609 229 149 6 chr6 26478267 26478368 -123038669 + Lx2 LINE L1 6867 6996 -1 6 787 323 319 93 7 chr6 26478368 26478507 -123038530 + HAL1-3A_ME LINE L1 2287 2437 -421 6 787 21 57 0 0 chr6 26478600 26478635 -123038402 + AT_rich Low_complexity Low_complexity 1 35 0 6 787 338 291 75 42 chr6 26478679 26478919 -123038118 + L1M4c LINE L1 2194 2441 -3943 6 787 310 172 0 0 chr6 26479169 26479233 -123037804 + Lx2 LINE L1 6934 6997 0 6 787 35311 76 8 5 chr6 26479314 26485479 -123031558 - L1Md_F3 LINE L1 -14 6570 396 6 787 1059 153 47 28 chr6 26485509 26485724 -123031313 - Lx3A LINE L1 0 6981 6763 6 787 311 367 10 0 chr6 26485736 26485834 -123031203 - PB1D10 SINE Alu -5 112 14 6 787 318 256 148 16 chr6 26486577 26486760 -123030277 + L1ME1 LINE L1 5931 6137 -42 6 787 555 56 0 0 chr6 26487188 26487259 -123029778 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 6 787 382 360 94 28 chr6 26487617 26487937 -123029100 - MTD LTR MaLR -78 341 1 6 787 1236 277 19 27 chr6 26488311 26488686 -123028351 + Lx9 LINE L1 6516 6887 -757 6 787 405 0 0 0 chr6 26488741 26488786 -123028251 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 787 195 42 0 0 chr6 26489384 26489408 -123027629 + (A)n Simple_repeat Simple_repeat 1 24 0 6 787 351 44 0 0 chr6 26490072 26490117 -123026920 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 787 384 22 0 0 chr6 26490283 26490328 -123026709 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 787 195 129 0 0 chr6 26490344 26490375 -123026662 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 6 787 312 27 0 0 chr6 26490379 26490416 -123026621 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 787 566 285 19 34 chr6 26492704 26492911 -123024126 - Lx6 LINE L1 -26 7434 7231 6 787 3208 190 146 100 chr6 26492963 26493815 -123023222 - RMER19B LTR ERVK -11 891 1 6 787 5957 215 28 15 chr6 26494308 26495652 -123021385 - Lx2B LINE L1 -1 6999 5638 6 787 501 17 0 0 chr6 26497072 26497130 -123019907 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 787 1159 181 86 21 chr6 26498279 26498555 -123018482 - RMER1B Other Other -2 1064 813 6 787 255 31 0 0 chr6 26498610 26498642 -123018395 + (TC)n Simple_repeat Simple_repeat 2 33 0 6 787 246 308 0 0 chr6 26498946 26499024 -123018013 + (TA)n Simple_repeat Simple_repeat 1 78 0 6 787 529 340 70 74 chr6 26499035 26499080 -123017957 - B4 SINE B4 -22 270 237 6 787 3205 37 37 0 chr6 26499080 26499462 -123017575 + MTA_Mm LTR MaLR 1 396 0 6 787 529 340 70 74 chr6 26499462 26499686 -123017351 - B4 SINE B4 -56 236 2 6 787 244 242 0 31 chr6 26501909 26501973 -123015064 + GA-rich Low_complexity Low_complexity 4 65 0 1 787 24 53 0 0 chr6 26502462 26502500 -123014537 + AT_rich Low_complexity Low_complexity 1 38 0 2 787 3684 158 21 8 chr6 26502500 26503151 -123013886 - Lx3C LINE L1 0 6976 6317 3 787 321 137 0 0 chr6 26503153 26503204 -123013833 + L1_Mur1 LINE L1 707 757 -6225 4 787 438 223 178 26 chr6 26503317 26503469 -123013568 + L1_Mur1 LINE L1 672 846 -6136 5 787 29 101 0 0 chr6 26503615 26503714 -123013323 + AT_rich Low_complexity Low_complexity 1 99 0 6 787 321 284 91 29 chr6 26503790 26504000 -123013037 - L1MA6 LINE L1 -6 6294 6072 7 787 818 285 38 31 chr6 26504640 26504930 -123012107 + Lx7 LINE L1 7089 7380 -316 8 787 654 95 8 25 chr6 26504930 26505049 -123011988 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 9 787 654 206 131 23 chr6 26505051 26505265 -123011772 + Lx7 LINE L1 7456 7692 -4 8 787 22 35 0 0 chr6 26505708 26505737 -123011300 + AT_rich Low_complexity Low_complexity 1 29 0 1 787 318 377 0 64 chr6 26507103 26507259 -123009778 - B1F1 SINE Alu -1 148 3 1 787 3225 125 27 47 chr6 26507783 26508337 -123008700 + Lx LINE L1 6098 6640 -14 1 787 207 0 0 0 chr6 26508337 26508360 -123008677 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 787 567 132 0 0 chr6 26508360 26508451 -123008586 + (GGGA)n Simple_repeat Simple_repeat 3 93 0 1 787 27 0 0 0 chr6 26508749 26508776 -123008261 + AT_rich Low_complexity Low_complexity 1 27 0 1 787 206 234 21 0 chr6 26509317 26509364 -123007673 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 787 5340 131 4 0 chr6 26509396 26510198 -123006839 + Lx LINE L1 5836 6640 -14 1 787 183 100 0 0 chr6 26510199 26510229 -123006808 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1 787 788 245 34 57 chr6 26510254 26510354 -123006683 - L1_Rod LINE L1 -171 5676 5574 1 787 1873 216 23 193 chr6 26510354 26511089 -123005948 - RMER19C LTR ERVK 0 611 2 2 787 788 245 34 57 chr6 26511089 26511252 -123005785 - L1_Rod LINE L1 -274 5573 5419 1 787 1211 295 77 23 chr6 26511265 26512522 -123004515 - Lx5 LINE L1 -27 7433 5798 2 787 3909 192 22 34 chr6 26512564 26513364 -123003673 + L1_Mur2 LINE L1 4450 5243 -634 2 787 222 37 0 0 chr6 26513364 26513391 -123003646 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 787 3909 192 22 34 chr6 26513391 26513524 -123003513 + L1_Mur2 LINE L1 5244 5372 -505 2 787 1943 190 22 49 chr6 26513524 26513929 -123003108 - ORR1B1 LTR MaLR 0 394 1 2 787 1338 184 68 84 chr6 26513929 26514047 -123002990 - ORR1B1-int LTR MaLR 0 1509 1393 2 787 830 107 98 0 chr6 26514047 26514169 -123002868 + B1_Mus1 SINE Alu 1 134 -14 2 787 990 3 0 82 chr6 26514173 26514489 -123002548 + (CAAAA)n Simple_repeat Simple_repeat 1 289 0 2 787 1338 184 68 84 chr6 26514489 26514732 -123002305 - ORR1B1-int LTR MaLR -117 1392 1152 2 787 4941 59 31 3 chr6 26514734 26515385 -123001652 - L1_Mus2 LINE L1 0 6566 5898 2 787 1271 251 50 10 chr6 26515398 26515696 -123001341 - ORR1B1 LTR MaLR -84 310 1 2 787 1623 214 42 11 chr6 26515696 26516092 -123000945 + L1_Mur2 LINE L1 5368 5804 -385 2 787 258 173 40 0 chr6 26516137 26516212 -123000825 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 787 183 306 18 101 chr6 26516328 26516437 -123000600 - L3 LINE CR1 -2281 2208 2109 3 787 25 0 0 0 chr6 26517212 26517237 -122999800 + AT_rich Low_complexity Low_complexity 1 25 0 3 787 229 329 54 34 chr6 26517662 26517810 -122999227 - MLT1L LTR MaLR -16 594 444 3 787 234 0 0 0 chr6 26517812 26517838 -122999199 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 787 336 24 0 0 chr6 26517928 26517969 -122999068 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 787 219 130 14 68 chr6 26518142 26518216 -122998821 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 3 787 328 82 33 0 chr6 26518516 26518577 -122998460 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 787 7582 113 53 24 chr6 26519500 26520776 -122996261 + Lx3_Mus LINE L1 5673 6986 -23 3 787 195 42 0 0 chr6 26520776 26520800 -122996237 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 787 669 237 186 51 chr6 26521718 26521916 -122995121 + Lx9 LINE L1 7261 7459 -185 3 787 189 0 0 0 chr6 26521916 26521937 -122995100 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 787 341 43 0 21 chr6 26521937 26521984 -122995053 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 787 669 237 186 51 chr6 26521984 26522117 -122994920 + Lx9 LINE L1 7460 7637 -7 3 787 236 316 27 57 chr6 26523730 26523872 -122993165 + MIRb SINE MIR 121 260 -2 4 787 1209 55 0 0 chr6 26524170 26524316 -122992721 + B1_Mm SINE Alu 1 146 -1 4 787 194 0 39 0 chr6 26524316 26524342 -122992695 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 787 1671 102 31 0 chr6 26524501 26524810 -122992227 - L1_Mus3 LINE L1 0 6638 6376 4 787 230 171 0 79 chr6 26524810 26524830 -122992207 + polypyrimidine Low_complexity Low_complexity 4 22 0 4 787 192 97 0 0 chr6 26524838 26524869 -122992168 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 4 787 623 223 13 57 chr6 26524881 26525038 -122991999 - B1_Mur4 SINE Alu 0 150 1 4 787 2419 257 95 1 chr6 26525076 26525726 -122991311 - Lx5 LINE L1 -3 7047 6349 4 787 325 215 160 58 chr6 26525734 26525839 -122991198 - Lx9 LINE L1 -37 7607 7501 5 787 315 0 0 0 chr6 26525839 26525874 -122991163 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 787 325 215 160 58 chr6 26525874 26525956 -122991081 - Lx9 LINE L1 -144 7500 7401 5 787 492 18 0 0 chr6 26527782 26527839 -122989198 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 787 8554 130 16 11 chr6 26528477 26529969 -122987068 + Lx3B LINE L1 5475 6971 -2 5 787 200 61 61 0 chr6 26530107 26530140 -122986897 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 787 1121 95 0 0 chr6 26530144 26530291 -122986746 - B1_Mus1 SINE Alu 0 148 2 5 787 23 78 0 0 chr6 26531833 26531884 -122985153 + AT_rich Low_complexity Low_complexity 1 51 0 5 787 23 33 0 0 chr6 26532143 26532173 -122984864 + AT_rich Low_complexity Low_complexity 1 30 0 5 787 2526 147 5 10 chr6 26533756 26534169 -122982868 + Lx2B LINE L1 6475 6885 -115 5 787 29 47 0 0 chr6 26536502 26536545 -122980492 + AT_rich Low_complexity Low_complexity 1 43 0 5 787 420 20 0 0 chr6 26536661 26536710 -122980327 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 787 437 333 36 82 chr6 26536818 26537148 -122979889 - Lx9 LINE L1 -356 7288 6974 6 787 318 169 15 0 chr6 26538306 26538483 -122978554 - L1_Mus3 LINE L1 0 6638 6558 6 787 6989 181 7 191 chr6 26538485 26539277 -122977760 - L1_Mur2 LINE L1 -90 5787 5258 6 787 612 109 16 16 chr6 26539277 26539398 -122977639 - L1_Mus3 LINE L1 0 6638 6518 6 787 6989 181 7 191 chr6 26539398 26540903 -122976134 - L1_Mur2 LINE L1 -620 5257 3912 6 787 2890 184 141 5 chr6 26540900 26540976 -122976061 + Lx2B LINE L1 5159 5243 -634 6 787 378 0 0 0 chr6 26540976 26541018 -122976019 + (TAAAA)n Simple_repeat Simple_repeat 5 46 0 6 787 6479 186 47 14 chr6 26541018 26542702 -122974335 + Lx2B LINE L1 5244 6995 -5 6 787 26 30 0 0 chr6 26543254 26543287 -122973750 + AT_rich Low_complexity Low_complexity 1 33 0 6 787 23 33 0 0 chr6 26543423 26543453 -122973584 + AT_rich Low_complexity Low_complexity 1 30 0 6 787 183 162 0 0 chr6 26543563 26543600 -122973437 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 787 245 389 9 27 chr6 26543606 26543717 -122973320 - RSINE1 SINE B4 -3 162 54 7 787 312 292 14 0 chr6 26543923 26543995 -122973042 - RSINE1 SINE B4 -89 76 4 7 787 21 0 0 0 chr6 26544208 26544229 -122972808 + AT_rich Low_complexity Low_complexity 1 21 0 7 787 228 370 128 51 chr6 26544560 26544988 -122972049 + MLT1C LTR MaLR 3 463 -4 7 787 3422 33 2 0 chr6 26545377 26545772 -122971265 + MTA_Mm LTR MaLR 1 396 0 7 787 8944 49 0 2 chr6 26545772 26546872 -122970165 + MTA_Mm-int LTR MaLR 1 1098 0 7 787 3245 48 2 2 chr6 26546872 26547268 -122969769 + MTA_Mm LTR MaLR 1 396 0 7 787 255 31 0 0 chr6 26547599 26547631 -122969406 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 787 810 287 128 7 chr6 26547631 26547919 -122969118 + Lx8 LINE L1 6265 6587 -886 7 787 32 81 0 0 chr6 26548226 26548300 -122968737 + AT_rich Low_complexity Low_complexity 1 74 0 7 787 26 30 0 0 chr6 26549033 26549066 -122967971 + AT_rich Low_complexity Low_complexity 1 33 0 7 787 287 104 0 20 chr6 26549251 26549300 -122967737 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 787 24 32 0 0 chr6 26549392 26549423 -122967614 + AT_rich Low_complexity Low_complexity 1 31 0 7 787 21 0 0 0 chr6 26550317 26550338 -122966699 + AT_rich Low_complexity Low_complexity 1 21 0 8 787 27 29 0 0 chr6 26550344 26550378 -122966659 + AT_rich Low_complexity Low_complexity 1 34 0 8 787 291 54 0 0 chr6 26550382 26550419 -122966618 + (TA)n Simple_repeat Simple_repeat 1 37 0 8 787 425 318 17 3 chr6 26550644 26550814 -122966223 + Lx8 LINE L1 6758 6940 -533 8 787 1550 223 75 49 chr6 26550836 26551413 -122965624 + RMER6C LTR ERVK 2 585 -135 8 787 496 318 81 12 chr6 26551470 26551728 -122965309 + Lx8 LINE L1 7193 7468 -5 8 787 1031 283 136 0 chr6 26551740 26552079 -122964958 + Lx6 LINE L1 6086 6470 -990 8 787 2101 32 0 0 chr6 26552097 26552344 -122964693 + L1Md_T LINE L1 5340 5586 -297 8 787 8464 31 1 0 chr6 26552344 26553339 -122963698 + L1Md_T LINE L1 5587 6582 0 8 787 292 347 114 26 chr6 26553342 26553570 -122963467 - Lx8 LINE L1 -235 7238 6991 8 787 641 359 81 22 chr6 26553614 26554169 -122962868 + L1MC LINE L1 3353 3940 -2206 8 787 1358 176 7 73 chr6 26554261 26554536 -122962501 - ORR1A4 LTR MaLR -72 257 1 8 787 21 0 0 0 chr6 26554815 26554836 -122962201 + AT_rich Low_complexity Low_complexity 1 21 0 9 787 35337 35 0 0 chr6 26554920 26560326 -122956711 + L1Md_T LINE L1 87 5589 -297 9 787 8894 10 0 0 chr6 26560326 26561322 -122955715 + L1Md_T LINE L1 5590 6585 0 9 787 189 0 0 0 chr6 26562060 26562081 -122954956 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 787 23 33 0 0 chr6 26562213 26562243 -122954794 + AT_rich Low_complexity Low_complexity 1 30 0 9 787 1070 237 78 44 chr6 26562279 26562752 -122954285 - Lx7 LINE L1 0 7696 7208 9 787 230 292 56 0 chr6 26562756 26562828 -122954209 - MTE2b LTR MaLR -237 142 67 9 787 247 247 118 0 chr6 26562884 26562969 -122954068 - L1_Rod LINE L1 -3486 2361 2267 9 787 1199 73 0 0 chr6 26562984 26563149 -122953888 - L1_Mus2 LINE L1 0 6566 6402 9 787 4777 103 7 11 chr6 26563932 26564454 -122952583 - L1_Mus3 LINE L1 0 6638 6119 9 787 1484 175 38 96 chr6 26564454 26564871 -122952166 + RLTR9C LTR ERVK 1 393 0 9 787 4777 103 7 11 chr6 26564871 26565053 -122951984 - L1_Mus3 LINE L1 -520 6118 5937 9 787 391 328 35 12 chr6 26565703 26565959 -122951078 - L1MEc LINE L1 -1319 5000 4739 1 787 443 286 37 16 chr6 26566377 26566565 -122950472 - L1MEc LINE L1 -5671 729 538 1 787 243 271 42 14 chr6 26566882 26566953 -122950084 + MER21B LTR ERV1 185 257 -606 1 787 470 346 146 47 chr6 26566967 26567352 -122949685 + MER21B LTR ERV1 304 726 -137 1 787 442 339 38 54 chr6 26567356 26567596 -122949441 + MTD LTR MaLR 1 236 -183 1 787 2529 218 74 10 chr6 26567601 26568184 -122948853 + Lx4B LINE L1 6432 7051 -7 1 787 6910 111 12 16 chr6 26568263 26569487 -122947550 + L1_Mus3 LINE L1 5413 6636 -2 1 787 2595 113 42 16 chr6 26570001 26570433 -122946604 + Lx3_Mus LINE L1 5735 6177 -832 1 787 2171 251 82 21 chr6 26570430 26571089 -122945948 - L1_Mur3 LINE L1 -6539 1173 475 1 787 294 302 248 0 chr6 26571079 26571208 -122945829 - L1_Mur3 LINE L1 -7045 667 507 1 787 870 318 78 71 chr6 26571414 26572031 -122945006 - Lx8 LINE L1 -66 7407 6787 1 787 24 53 0 0 chr6 26572192 26572230 -122944807 + AT_rich Low_complexity Low_complexity 1 38 0 1 787 276 182 76 0 chr6 26573022 26573088 -122943949 - Lx9 LINE L1 -7 7637 7567 1 787 23 54 0 0 chr6 26574124 26574161 -122942876 + AT_rich Low_complexity Low_complexity 1 37 0 1 787 458 33 0 16 chr6 26574257 26574318 -122942719 + (TAA)n Simple_repeat Simple_repeat 2 61 0 1 787 348 293 94 34 chr6 26574570 26574835 -122942202 - MER33 DNA MER1_type -38 286 6 1 787 4250 94 11 5 chr6 26574967 26575578 -122941459 + L1_Mus3 LINE L1 6019 6633 -5 1 787 975 146 15 5 chr6 26575625 26575825 -122941212 + MYSERV16_I-int LTR ERVK 1098 1299 -1027 1 787 255 125 0 0 chr6 26575840 26575880 -122941157 + (GAGAA)n Simple_repeat Simple_repeat 4 43 0 1 787 952 145 0 0 chr6 26575894 26576039 -122940998 + Lx3B LINE L1 6492 6636 -337 1 787 1371 121 24 28 chr6 26576039 26576286 -122940751 + Lx3B LINE L1 6725 6970 -3 1 787 486 193 85 24 chr6 26576325 26576490 -122940547 + MYSERV16_I-int LTR ERVK 2150 2324 -2 1 787 1287 147 0 0 chr6 26576490 26576714 -122940323 + Lx2A1 LINE L1 6785 7008 0 1 787 2482 217 21 23 chr6 26576762 26577323 -122939714 + RLTR20B2 LTR ERVK 1 560 0 1 787 21 36 0 0 chr6 26577363 26577391 -122939646 + AT_rich Low_complexity Low_complexity 1 28 0 1 787 2411 237 46 30 chr6 26577456 26578526 -122938511 + Lx5 LINE L1 5299 6377 -673 1 787 437 321 168 37 chr6 26578508 26578870 -122938167 + Lx5 LINE L1 6478 6908 -150 1 787 764 272 14 35 chr6 26578938 26579260 -122937777 - Lx5 LINE L1 -574 6886 6455 1 787 1210 183 132 0 chr6 26579268 26579557 -122937480 + L1_Mur3 LINE L1 4866 5192 -688 1 787 917 158 12 0 chr6 26579723 26579894 -122937143 + GA-rich Low_complexity Low_complexity 3 175 0 1 787 299 29 0 0 chr6 26579894 26579929 -122937108 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 787 21 36 0 0 chr6 26581028 26581056 -122935981 + AT_rich Low_complexity Low_complexity 1 28 0 1 787 1654 227 11 20 chr6 26582199 26582659 -122934378 + Lx4B LINE L1 6438 6899 -101 1 787 556 111 20 0 chr6 26582792 26582891 -122934146 + (TA)n Simple_repeat Simple_repeat 1 101 0 1 787 761 256 19 29 chr6 26583763 26583972 -122933065 - URR1A DNA MER1_type -12 214 8 1 787 41 58 0 0 chr6 26584549 26584618 -122932419 + AT_rich Low_complexity Low_complexity 1 69 0 1 787 1170 203 115 6 chr6 26584626 26584939 -122932098 - Lx9 LINE L1 -8 7636 7290 1 787 4064 192 122 70 chr6 26584943 26585988 -122931049 - RLTR25A LTR ERVK -2 1101 3 1 787 1102 247 117 12 chr6 26585988 26586312 -122930725 - Lx9 LINE L1 -349 7295 6938 1 787 404 197 0 0 chr6 26586323 26586394 -122930643 + Lx9 LINE L1 6613 6683 -961 1 787 1526 242 42 11 chr6 26586414 26586773 -122930264 + ORR1D1 LTR MaLR 3 372 -2 1 787 296 195 61 17 chr6 26587745 26587860 -122929177 + (TA)n Simple_repeat Simple_repeat 1 120 0 1 787 901 50 0 16 chr6 26587892 26587903 -122929134 - B1_Mus2 SINE Alu 0 147 138 1 787 275 49 24 0 chr6 26587903 26587944 -122929093 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 787 901 50 0 16 chr6 26587944 26588055 -122928982 - B1_Mus2 SINE Alu -10 137 27 1 787 428 219 0 110 chr6 26588198 26588316 -122928721 + MT2B LTR ERVL 163 267 -334 1 787 1010 75 0 7 chr6 26588213 26588348 -122928689 + B1_Mus2 SINE Alu 13 146 -1 1 787 339 33 32 32 chr6 26588349 26588411 -122928626 + (CAAAAA)n Simple_repeat Simple_repeat 4 65 0 1 787 747 112 0 0 chr6 26588461 26588577 -122928460 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 1 787 725 289 73 12 chr6 26588753 26589012 -122928025 - Lx6 LINE L1 -577 6883 6609 1 787 397 310 25 0 chr6 26589114 26589319 -122927718 - L1MB3 LINE L1 -34 6149 5941 1 787 260 238 0 16 chr6 26590545 26590609 -122926428 - RMER4B LTR ERVK -325 260 198 1 787 1097 133 10 5 chr6 26590639 26590835 -122926202 + Lx LINE L1 6457 6653 -1 1 787 283 216 189 0 chr6 26590836 26590910 -122926127 - RMER4B LTR ERVK -374 211 124 1 787 779 130 23 0 chr6 26590910 26591041 -122925996 - L1_Mur1 LINE L1 -1547 4339 4206 1 787 425 189 41 21 chr6 26591045 26591142 -122925895 - RMER4B LTR ERVK -471 114 16 1 787 3322 252 52 31 chr6 26591162 26592577 -122924460 - Lx7 LINE L1 -936 6760 5317 1 787 30 0 0 0 chr6 26593674 26593704 -122923333 + AT_rich Low_complexity Low_complexity 1 30 0 1 787 371 215 53 47 chr6 26593723 26593894 -122923143 + Lx9 LINE L1 7464 7635 -9 1 787 29 47 0 0 chr6 26594489 26594532 -122922505 + AT_rich Low_complexity Low_complexity 1 43 0 1 787 1230 279 28 3 chr6 26595179 26595499 -122921538 - Lx7 LINE L1 -921 6775 6448 1 787 1463 278 44 58 chr6 26595510 26595892 -122921145 + Lx7 LINE L1 6754 7122 -574 1 787 192 97 0 0 chr6 26595892 26595923 -122921114 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1 787 1032 116 0 0 chr6 26595923 26596070 -122920967 - B1_Mus1 SINE Alu 0 148 2 1 787 1463 278 44 58 chr6 26596070 26596126 -122920911 + Lx7 LINE L1 7123 7178 -518 1 787 690 47 0 0 chr6 26596126 26596212 -122920825 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 787 1463 278 44 58 chr6 26596212 26596389 -122920648 + Lx7 LINE L1 7179 7360 -336 1 787 423 56 0 0 chr6 26596451 26596505 -122920532 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1 787 694 259 78 47 chr6 26596512 26596832 -122920205 + Lx7 LINE L1 7367 7696 0 1 787 21 36 0 0 chr6 26597462 26597490 -122919547 + AT_rich Low_complexity Low_complexity 1 28 0 1 787 23 33 0 0 chr6 26597968 26597998 -122919039 + AT_rich Low_complexity Low_complexity 1 30 0 1 787 333 0 0 0 chr6 26598101 26598138 -122918899 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 787 581 199 6 0 chr6 26598232 26598388 -122918649 + GA-rich Low_complexity Low_complexity 1 157 0 1 787 261 57 0 0 chr6 26598415 26598450 -122918587 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 787 299 177 16 31 chr6 26598455 26598519 -122918518 + B4A SINE B4 186 248 -44 1 787 438 94 0 0 chr6 26598551 26598615 -122918422 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 787 390 321 97 24 chr6 26598998 26599378 -122917659 - L1MA4A LINE L1 -355 5948 5541 1 787 423 0 0 0 chr6 26599397 26599444 -122917593 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 1 787 270 337 70 99 chr6 26599573 26599886 -122917151 + ORR1D1 LTR MaLR 71 374 0 1 787 345 311 0 10 chr6 26600640 26600744 -122916293 + MER5B DNA MER1_type 58 160 -18 1 787 4286 52 17 2 chr6 26600943 26601484 -122915553 + L1_Mus1 LINE L1 6019 6567 0 1 787 207 0 0 0 chr6 26601535 26601558 -122915479 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 98 34684 71 6 3 chr6 26602182 26608263 -122908774 - L1Md_F2 LINE L1 0 6582 485 1 788 230 81 27 0 chr6 26608400 26608437 -122908600 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 788 519 17 0 0 chr6 26608437 26608496 -122908541 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 788 772 120 95 0 chr6 26608603 26608761 -122908276 + Lx LINE L1 6480 6652 -2 1 788 2320 98 14 17 chr6 26608780 26609133 -122907904 + L1_Mus3 LINE L1 6283 6634 -4 1 788 1228 166 5 0 chr6 26610030 26610229 -122906808 - Lx2 LINE L1 -19 6978 6779 1 788 6440 133 26 16 chr6 26610231 26610766 -122906271 - Lx2 LINE L1 -352 6645 6109 1 788 2911 89 2 5 chr6 26610766 26611163 -122905874 + MTA_Mm LTR MaLR 1 396 0 1 788 6440 163 21 9 chr6 26611163 26612338 -122904699 - Lx2 LINE L1 -889 6108 4925 1 788 605 136 0 0 chr6 26612566 26612654 -122904383 + ORR1A3 LTR MaLR 219 306 -20 1 788 255 79 0 0 chr6 26612810 26612848 -122904189 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 788 233 351 23 38 chr6 26612992 26613125 -122903912 + L2 LINE L2 1907 2037 -1382 1 788 713 120 25 8 chr6 26613451 26613569 -122903468 + PB1D9 SINE Alu 1 120 0 1 788 208 292 0 24 chr6 26613570 26613693 -122903344 + A-rich Low_complexity Low_complexity 3 122 0 1 788 585 329 18 50 chr6 26614043 26614264 -122902773 + MTE2b LTR MaLR 1 214 -165 1 788 253 228 18 90 chr6 26614195 26614306 -122902731 - Charlie9 DNA MER1_type -2079 678 576 1 788 955 304 78 39 chr6 26614732 26615092 -122901945 + MTE2b LTR MaLR 1 374 -5 1 788 334 355 81 89 chr6 26615415 26615650 -122901387 - MLT1F1 LTR MaLR -74 495 263 1 788 196 28 83 0 chr6 26615938 26615974 -122901063 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 788 984 155 39 10 chr6 26615977 26616185 -122900852 - Lx2A1 LINE L1 0 7008 6795 1 788 276 381 76 43 chr6 26616230 26616414 -122900623 + ORR1E LTR MaLR 1 190 -169 1 788 575 27 14 0 chr6 26618149 26618222 -122898815 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 1 788 1510 43 14 24 chr6 26618290 26618503 -122898534 + L1Md_F2 LINE L1 6370 6580 -2 1 788 181 0 69 0 chr6 26618506 26618535 -122898502 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 788 239 54 0 26 chr6 26618722 26618760 -122898277 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 788 231 36 0 0 chr6 26619404 26619432 -122897605 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 788 25 65 0 0 chr6 26619773 26619819 -122897218 + AT_rich Low_complexity Low_complexity 1 46 0 1 788 195 42 0 0 chr6 26620077 26620101 -122896936 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 788 419 222 12 0 chr6 26620243 26620324 -122896713 - Lx5 LINE L1 -549 6501 6420 1 788 233 36 0 0 chr6 26620506 26620534 -122896503 + Lx9 LINE L1 7431 7458 -186 1 788 258 276 16 8 chr6 26620551 26620679 -122896358 + Lx9 LINE L1 7516 7644 0 1 788 473 328 6 33 chr6 26621134 26621156 -122895881 - B3 SINE B2 0 216 195 1 788 513 0 0 0 chr6 26621156 26621213 -122895824 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 788 473 277 22 101 chr6 26621213 26621411 -122895626 - B3 SINE B2 -22 194 1 1 788 874 184 0 0 chr6 26621444 26621607 -122895430 + Lx6 LINE L1 2397 2559 -3321 1 788 5698 223 74 28 chr6 26621611 26623516 -122893521 + Lx6 LINE L1 4155 6138 -1322 1 788 226 224 119 17 chr6 26623690 26623749 -122893288 + Lx6 LINE L1 6643 6707 -766 1 788 252 67 64 39 chr6 26623749 26623827 -122893210 + (CAAA)n Simple_repeat Simple_repeat 1 80 0 2 788 295 311 275 45 chr6 26623851 26624213 -122892824 + Lx6 LINE L1 6736 7180 -293 1 788 322 115 33 0 chr6 26624268 26624329 -122892708 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2 788 27 29 0 0 chr6 26624781 26624815 -122892222 + AT_rich Low_complexity Low_complexity 1 34 0 2 788 1127 65 0 0 chr6 26625130 26625268 -122891769 - B1_Mus2 SINE Alu -7 140 3 2 788 3333 40 2 0 chr6 26625268 26625663 -122891374 + MTA_Mm LTR MaLR 1 396 0 2 788 190 254 17 0 chr6 26625922 26625981 -122891056 + L2a LINE L2 3081 3140 -286 2 788 4950 112 10 4 chr6 26626348 26627072 -122889965 + Lx3A LINE L1 6232 6959 -22 2 788 1013 0 8 0 chr6 26627082 26627199 -122889838 + (GA)n Simple_repeat Simple_repeat 2 119 0 2 788 261 325 8 73 chr6 26628179 26628212 -122888825 + MT2B2 LTR ERVL 130 154 -430 2 788 385 318 25 1 chr6 26628212 26628354 -122888683 + B1F SINE Alu 1 144 -5 2 788 561 55 0 0 chr6 26628668 26628741 -122888296 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 788 315 0 0 0 chr6 26628846 26628881 -122888156 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 788 765 329 37 37 chr6 26628965 26629394 -122887643 - L1_Mus1 LINE L1 -267 7377 6949 2 788 238 290 16 0 chr6 26629631 26629693 -122887344 + MTE2b LTR MaLR 207 269 -110 2 788 240 212 0 0 chr6 26629827 26629893 -122887144 + T-rich Low_complexity Low_complexity 1 66 0 2 788 1165 75 0 0 chr6 26629893 26630040 -122886997 - B1_Mus2 SINE Alu 0 147 1 2 788 203 309 96 58 chr6 26630221 26630379 -122886658 - MIRb SINE MIR -84 184 18 2 788 1031 90 28 0 chr6 26630577 26630722 -122886315 - RLTR13B4 LTR ERVK 0 803 655 2 788 34241 75 4 4 chr6 26630729 26636966 -122880071 - L1Md_F2 LINE L1 -13 6569 334 2 788 4118 96 74 115 chr6 26636966 26637759 -122879278 - RLTR13B1 LTR ERVK -132 761 1 2 788 7417 82 9 2 chr6 26638071 26639073 -122877964 - L1_Mus1 LINE L1 0 6654 5605 2 788 243 206 0 0 chr6 26639690 26639753 -122877284 - Lx9 LINE L1 -1 7643 7581 2 788 233 241 38 12 chr6 26639764 26639844 -122877193 - Lx9 LINE L1 -193 7451 7370 2 788 884 35 9 0 chr6 26639848 26639964 -122877073 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 2 788 528 350 0 0 chr6 26639980 26640177 -122876860 - B3 SINE B2 -18 198 2 2 788 28865 55 103 21 chr6 26641758 26645830 -122871207 + L1Md_A LINE L1 512 4992 -891 2 788 4357 22 0 0 chr6 26645830 26646323 -122870714 + MT2_Mm LTR ERVL 1 493 0 2 788 28865 41 126 1 chr6 26646323 26646922 -122870115 + L1Md_A LINE L1 4993 5586 -297 2 788 8353 33 1 0 chr6 26646922 26647915 -122869122 + L1Md_A LINE L1 5587 6580 -2 2 788 243 146 0 0 chr6 26647933 26647988 -122869049 + (A)n Simple_repeat Simple_repeat 1 55 0 2 788 23 0 0 0 chr6 26649559 26649582 -122867455 + AT_rich Low_complexity Low_complexity 1 23 0 2 788 207 277 0 0 chr6 26649658 26649723 -122867314 + T-rich Low_complexity Low_complexity 1 65 0 2 788 302 47 0 44 chr6 26650000 26650045 -122866992 - B1_Mm SINE Alu 0 147 105 2 788 234 134 29 15 chr6 26651906 26651974 -122865063 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 788 22 0 0 0 chr6 26651975 26651997 -122865040 + AT_rich Low_complexity Low_complexity 1 22 0 2 788 612 70 0 0 chr6 26653075 26653161 -122863876 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 788 662 65 11 0 chr6 26654697 26654789 -122862248 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 788 24 32 0 0 chr6 26655878 26655909 -122861128 + AT_rich Low_complexity Low_complexity 1 31 0 2 788 414 0 0 0 chr6 26656492 26656538 -122860499 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 788 231 146 0 0 chr6 26657380 26657421 -122859616 + (ATGGTG)n Simple_repeat Simple_repeat 5 45 0 2 788 25 75 0 0 chr6 26657950 26658003 -122859034 + AT_rich Low_complexity Low_complexity 1 53 0 2 788 378 0 0 0 chr6 26659723 26659765 -122857272 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 788 310 310 7 0 chr6 26660103 26660198 -122856839 - B3A SINE B2 -93 102 5 2 788 1854 240 7 14 chr6 26660341 26660759 -122856278 - MTC LTR MaLR 0 421 7 2 788 21 0 0 0 chr6 26661476 26661497 -122855540 + AT_rich Low_complexity Low_complexity 1 21 0 2 788 1302 256 66 75 chr6 26661574 26662042 -122854995 - Lx6 LINE L1 -26 7434 6971 2 788 1402 170 72 0 chr6 26662042 26662307 -122854730 + RLTR15 LTR ERVK 1 284 -75 2 788 207 162 0 0 chr6 26662309 26662346 -122854691 + CT-rich Low_complexity Low_complexity 4 40 0 2 788 972 90 0 0 chr6 26662346 26662480 -122854557 - B1_Mm SINE Alu 0 147 14 2 788 517 103 26 0 chr6 26662481 26662559 -122854478 + RLTR15 LTR ERVK 271 350 -9 2 788 1354 223 62 16 chr6 26662563 26663149 -122853888 - RLTR12A LTR ERVK -5 563 18 2 788 262 75 18 36 chr6 26663278 26663333 -122853704 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 2 788 21 0 0 0 chr6 26664004 26664025 -122853012 + AT_rich Low_complexity Low_complexity 1 21 0 2 788 701 190 43 48 chr6 26664083 26664271 -122852766 + MYSERV6-int LTR ERVK 6529 6715 -2244 2 788 1182 62 0 0 chr6 26664300 26664445 -122852592 + B1_Mm SINE Alu 2 146 -1 2 788 468 222 16 49 chr6 26664473 26664596 -122852441 + RLTR18-int LTR ERVK 4736 4854 -507 2 788 180 0 0 0 chr6 26664779 26664799 -122852238 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 788 576 205 51 0 chr6 26664801 26664918 -122852119 + B1_Mus1 SINE Alu 19 141 -7 2 788 4667 267 85 56 chr6 26665045 26666186 -122850851 + MYSERV16_I-int LTR ERVK 2 1064 -1262 2 788 954 119 0 0 chr6 26666186 26666329 -122850708 + B1_Mus2 SINE Alu 2 144 -3 2 788 4667 248 52 28 chr6 26666329 26667487 -122849550 + MYSERV16_I-int LTR ERVK 1065 2262 -64 2 788 9324 128 13 28 chr6 26667510 26669086 -122847951 + L1_Mur1 LINE L1 4334 5886 0 2 788 1279 186 8 12 chr6 26669088 26669338 -122847699 + Lx3C LINE L1 6720 6968 -8 2 788 885 243 15 0 chr6 26669587 26669789 -122847248 + RLTR15 LTR ERVK 1 205 -154 2 788 477 318 111 32 chr6 26670737 26671341 -122845696 - L1MA6 LINE L1 -262 6029 5385 2 788 354 97 32 0 chr6 26671419 26671481 -122845556 - L1MA6 LINE L1 -871 5269 5206 2 788 270 246 17 50 chr6 26671499 26671619 -122845418 - Lx9 LINE L1 -6 7638 7523 2 788 390 21 0 0 chr6 26671619 26671666 -122845371 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 788 817 253 52 0 chr6 26671666 26671895 -122845142 - Lx9 LINE L1 -188 7456 7216 2 788 1289 139 10 26 chr6 26672079 26672355 -122844682 + L1_Mus3 LINE L1 6394 6649 -5 2 788 227 222 22 0 chr6 26672970 26673060 -122843977 + (CATATA)n Simple_repeat Simple_repeat 2 93 0 2 788 372 315 8 0 chr6 26673137 26673267 -122843770 + (CA)n Simple_repeat Simple_repeat 2 132 0 2 788 273 331 7 26 chr6 26673212 26673367 -122843670 + (CATA)n Simple_repeat Simple_repeat 4 155 0 2 788 2719 89 15 18 chr6 26673707 26674016 -122843021 - MTB LTR MaLR 0 400 92 2 788 2933 78 19 2 chr6 26674016 26674430 -122842607 + BGLII LTR ERVK 1 421 0 2 788 2719 89 15 18 chr6 26674430 26674521 -122842516 - MTB LTR MaLR -309 91 1 2 788 416 97 20 70 chr6 26674740 26674840 -122842197 - L1Md_T LINE L1 0 6582 6488 2 788 533 338 67 19 chr6 26674840 26675148 -122841889 - L1M3e LINE L1 -6698 332 10 2 788 1802 194 100 8 chr6 26675777 26676156 -122840881 - MTC LTR MaLR -7 414 1 2 788 252 167 0 0 chr6 26676606 26676654 -122840383 + GA-rich Low_complexity Low_complexity 2 49 0 2 788 226 278 19 0 chr6 26676734 26676788 -122840249 + ID SINE ID 25 79 -145 2 788 26 0 0 0 chr6 26677706 26677732 -122839305 + AT_rich Low_complexity Low_complexity 1 26 0 2 788 21 36 0 0 chr6 26678342 26678370 -122838667 + AT_rich Low_complexity Low_complexity 1 28 0 2 788 6288 264 103 33 chr6 26678394 26680345 -122836692 - Lx6 LINE L1 -1 7459 5350 2 788 937 204 26 31 chr6 26680345 26680572 -122836465 + URR1A DNA MER1_type 1 226 0 2 788 6288 201 43 35 chr6 26680572 26681275 -122835762 - Lx6 LINE L1 -531 5349 4628 2 788 3321 43 2 0 chr6 26681275 26681670 -122835367 - MTA_Mm LTR MaLR 0 396 1 2 788 6288 201 43 35 chr6 26681670 26682017 -122835020 - Lx6 LINE L1 -1253 4627 4280 2 788 236 191 0 0 chr6 26682042 26682089 -122834948 - Lx6 LINE L1 -1593 4287 4241 2 788 323 252 0 15 chr6 26682369 26682502 -122834535 + CT-rich Low_complexity Low_complexity 3 133 0 2 788 23 33 0 0 chr6 26682898 26682928 -122834109 + AT_rich Low_complexity Low_complexity 1 30 0 2 788 1285 79 39 6 chr6 26683490 26683668 -122833369 + B2_Mm2 SINE B2 2 185 -10 2 788 4492 55 2 16 chr6 26684293 26684865 -122832172 - LTRIS2 LTR ERV1 0 564 1 2 788 3013 75 22 0 chr6 26684963 26685375 -122831662 - BGLII LTR ERVK 0 421 1 2 788 2543 67 0 0 chr6 26685841 26686171 -122830866 + L1Md_T LINE L1 6252 6581 -1 2 788 201 286 14 14 chr6 26687551 26687622 -122829415 + (CATA)n Simple_repeat Simple_repeat 3 73 0 2 788 224 224 0 20 chr6 26687565 26687615 -122829422 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 788 2303 124 38 5 chr6 26688544 26688917 -122828120 + Lx LINE L1 6266 6650 -4 2 788 23 0 0 0 chr6 26689283 26689306 -122827731 + AT_rich Low_complexity Low_complexity 1 23 0 2 788 409 296 51 0 chr6 26689321 26689497 -122827540 - L1MA6 LINE L1 -21 6279 6095 2 788 1171 292 24 53 chr6 26689548 26689924 -122827113 - MTE2a LTR MaLR 0 379 15 2 788 238 291 19 37 chr6 26689959 26690066 -122826971 - L1MA6 LINE L1 -275 6016 5912 2 788 5012 158 29 16 chr6 26690162 26691048 -122825989 + Lx3C LINE L1 6072 6969 -7 2 788 369 0 0 0 chr6 26691050 26691091 -122825946 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 788 21 36 0 0 chr6 26691372 26691400 -122825637 + AT_rich Low_complexity Low_complexity 1 28 0 2 788 34 24 0 0 chr6 26691583 26691624 -122825413 + AT_rich Low_complexity Low_complexity 1 41 0 2 788 375 349 8 60 chr6 26691814 26691948 -122825089 + RSINE1 SINE B4 1 127 -38 2 788 311 267 106 7 chr6 26692283 26692434 -122824603 + L1ME3 LINE L1 5810 5975 -187 2 788 1541 148 25 35 chr6 26692468 26692782 -122824255 - Lx3C LINE L1 -625 6351 6041 2 788 749 184 121 0 chr6 26692780 26692954 -122824083 + Lx3C LINE L1 6780 6974 -2 2 788 1568 88 0 0 chr6 26692969 26693185 -122823852 - L1_Mus2 LINE L1 0 6566 6351 2 788 339 68 0 22 chr6 26693185 26693230 -122823807 + L1_Mus2 LINE L1 6322 6365 -201 2 788 25 0 0 0 chr6 26693230 26693255 -122823782 + AT_rich Low_complexity Low_complexity 1 25 0 2 788 669 311 25 15 chr6 26694891 26695087 -122821950 - ID_B1 SINE B4 -21 203 6 2 788 37 39 0 0 chr6 26695582 26695633 -122821404 + AT_rich Low_complexity Low_complexity 1 51 0 3 788 21 0 0 0 chr6 26696686 26696707 -122820330 + AT_rich Low_complexity Low_complexity 1 21 0 3 788 552 166 0 0 chr6 26697511 26697650 -122819387 + (TG)n Simple_repeat Simple_repeat 1 139 0 3 788 674 320 94 41 chr6 26697650 26698044 -122818993 - Lx9 LINE L1 -213 7431 7017 3 788 342 0 0 0 chr6 26698152 26698190 -122818847 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 788 308 200 147 9 chr6 26698554 26698670 -122818367 - Lx9 LINE L1 0 7644 7513 3 788 422 79 0 16 chr6 26698671 26698735 -122818302 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 788 2797 137 33 2 chr6 26698738 26699191 -122817846 - MT2C_Mm LTR ERVL -8 467 1 3 788 420 95 155 0 chr6 26699191 26699275 -122817762 - Lx9 LINE L1 -160 7484 7388 3 788 1824 231 95 17 chr6 26699300 26699783 -122817254 - Lx9 LINE L1 -311 7333 6813 3 788 3513 129 136 0 chr6 26699805 26700400 -122816637 - Lx3A LINE L1 -2 6979 6304 3 788 2717 117 43 28 chr6 26700395 26700860 -122816177 + Lx3A LINE L1 5374 5845 -41 3 788 6396 91 12 0 chr6 26700858 26701833 -122815204 + L1_Mus3 LINE L1 5480 6466 -172 3 788 2204 68 29 6 chr6 26701833 26702144 -122814893 + RLTR10 LTR ERVK 1 318 -72 3 788 979 61 0 15 chr6 26702235 26702369 -122814668 + RLTR10 LTR ERVK 259 390 0 3 788 14505 31 36 104 chr6 26702371 26704500 -122812537 + RLTR10-int LTR ERVK 3 1986 -1 3 788 2306 44 13 285 chr6 26704500 26705036 -122812001 + RLTR10 LTR ERVK 1 390 0 3 788 1055 65 19 6 chr6 26705036 26705192 -122811845 + L1_Mus3 LINE L1 6462 6619 -19 3 788 288 0 0 0 chr6 26705192 26705224 -122811813 + (TAA)n Simple_repeat Simple_repeat 3 34 0 3 788 2727 122 13 23 chr6 26705230 26705706 -122811331 + Lx3A LINE L1 5837 6307 -674 3 788 1833 261 43 0 chr6 26705728 26706169 -122810868 - Lx9 LINE L1 -843 6801 6342 3 788 243 0 0 0 chr6 26706172 26706199 -122810838 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 788 207 0 0 0 chr6 26706199 26706221 -122810816 + (GA)n Simple_repeat Simple_repeat 1 23 0 3 788 219 265 29 0 chr6 26706224 26706292 -122810745 + (CATA)n Simple_repeat Simple_repeat 4 73 0 3 788 26 74 0 0 chr6 26706319 26706373 -122810664 + AT_rich Low_complexity Low_complexity 1 54 0 3 788 210 216 98 0 chr6 26706971 26707022 -122810015 + MIRc SINE MIR 160 215 -53 3 788 225 301 10 51 chr6 26707110 26707208 -122809829 - Charlie8 DNA MER1_type -1894 534 441 3 788 724 167 0 22 chr6 26707548 26707732 -122809305 + GA-rich Low_complexity Low_complexity 1 180 0 3 788 204 315 119 18 chr6 26707894 26708062 -122808975 - L2 LINE L2 -808 2611 2427 3 788 726 260 20 54 chr6 26709175 26709378 -122807659 - MTEa LTR MaLR -21 358 163 3 788 466 64 141 14 chr6 26709380 26709522 -122807515 + CT-rich Low_complexity Low_complexity 3 162 0 3 788 579 122 0 0 chr6 26709503 26709593 -122807444 + (TC)n Simple_repeat Simple_repeat 2 91 0 3 788 390 376 14 71 chr6 26709668 26709880 -122807157 - B4A SINE B4 -5 287 88 3 788 417 86 0 0 chr6 26710185 26710243 -122806794 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 788 501 62 0 0 chr6 26711226 26711291 -122805746 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 788 308 277 111 52 chr6 26712261 26712347 -122804690 - L1MA9 LINE L1 -81 6231 6133 3 788 1178 68 0 0 chr6 26712347 26712495 -122804542 + B1_Mus1 SINE Alu 1 148 0 3 788 308 277 111 52 chr6 26712495 26712697 -122804340 - L1MA9 LINE L1 -180 6132 5926 3 788 318 152 0 0 chr6 26713139 26713198 -122803839 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 788 275 278 101 70 chr6 26713527 26713997 -122803040 - L1M2c LINE L1 -4598 2509 2015 3 788 492 48 0 0 chr6 26714745 26714808 -122802229 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 788 510 17 0 0 chr6 26715113 26715172 -122801865 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 788 513 0 0 0 chr6 26715172 26715228 -122801809 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 788 255 268 27 61 chr6 26715649 26715796 -122801241 + L1MA6 LINE L1 6153 6294 -6 3 788 21 36 0 0 chr6 26715840 26715868 -122801169 + AT_rich Low_complexity Low_complexity 1 28 0 3 788 621 40 0 0 chr6 26716125 26716201 -122800836 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 788 1495 195 7 4 chr6 26717320 26717593 -122799444 + Lx7 LINE L1 6695 6968 -728 3 788 960 126 0 0 chr6 26717640 26717791 -122799246 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 3 788 1579 275 71 22 chr6 26717797 26718306 -122798731 - RMER5 LTR ERV1 0 534 1 3 788 1060 189 262 3 chr6 26718354 26718667 -122798370 + ORR1B1 LTR MaLR 1 394 0 3 788 243 0 0 0 chr6 26718674 26718701 -122798336 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 788 519 17 0 0 chr6 26718701 26718760 -122798277 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 788 497 222 111 45 chr6 26718760 26719048 -122797989 + Lx7 LINE L1 7390 7696 0 3 788 399 73 0 0 chr6 26719555 26719610 -122797427 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 788 23 0 0 0 chr6 26719988 26720011 -122797026 + AT_rich Low_complexity Low_complexity 1 23 0 3 788 492 327 15 5 chr6 26720078 26720281 -122796756 - ERVL-E-int LTR ERVL -3199 2468 2264 3 788 386 338 23 0 chr6 26720548 26720681 -122796356 - B1F1 SINE Alu -5 144 9 3 788 215 246 48 32 chr6 26724052 26724115 -122792922 + B4 SINE B4 3 66 -226 3 788 3249 171 66 66 chr6 26726356 26727433 -122789604 - RLTR13D1 LTR ERVK -58 965 1 3 788 314 332 28 71 chr6 26728090 26728301 -122788736 + L1MC1 LINE L1 115 316 -6192 3 788 226 179 44 15 chr6 26728402 26728470 -122788567 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 788 541 305 235 11 chr6 26728485 26728865 -122788172 + L1MC1 LINE L1 5605 6069 -439 3 788 2360 112 83 66 chr6 26729607 26730017 -122787020 + RLTR9B2 LTR ERVK 1 417 -3 3 788 320 235 101 22 chr6 26730465 26730604 -122786433 + Lx7 LINE L1 5662 5811 -1885 3 788 210 143 0 0 chr6 26731110 26731145 -122785892 + (A)n Simple_repeat Simple_repeat 1 35 0 3 788 1020 98 0 0 chr6 26731148 26731291 -122785746 + B1_Mm SINE Alu 2 144 -3 3 788 887 0 10 0 chr6 26731293 26731396 -122785641 + (GAA)n Simple_repeat Simple_repeat 2 105 0 3 788 31 76 0 0 chr6 26731915 26731981 -122785056 + AT_rich Low_complexity Low_complexity 1 66 0 3 788 207 125 0 0 chr6 26732345 26732385 -122784652 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 3 788 4424 276 53 15 chr6 26732974 26733033 -122784004 - Lx7 LINE L1 -274 7422 7360 3 788 297 0 0 0 chr6 26733033 26733066 -122783971 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 788 4424 276 53 15 chr6 26733066 26734379 -122782658 - Lx7 LINE L1 -337 7359 5997 3 788 1609 242 81 98 chr6 26734395 26734652 -122782385 - RMER19B LTR ERVK 0 902 621 3 788 7678 62 8 2 chr6 26734652 26735641 -122781396 + L1Md_F2 LINE L1 5588 6582 0 3 788 1609 242 81 98 chr6 26735641 26735988 -122781049 - RMER19B LTR ERVK -282 620 309 3 788 4748 227 82 40 chr6 26736011 26737575 -122779462 - Lx7 LINE L1 -1710 5986 4353 3 98 14945 148 37 32 chr6 26737581 26742352 -122774685 - L1_Mus3 LINE L1 -19 6619 494 3 789 6577 215 226 23 chr6 26742373 26742564 -122774473 - Lx7 LINE L1 -1512 4368 4175 3 789 366 23 0 0 chr6 26742564 26742607 -122774430 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 789 6577 215 226 23 chr6 26742607 26743400 -122773637 - Lx7 LINE L1 -1706 4174 3005 3 789 328 55 18 18 chr6 26743400 26743456 -122773581 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 789 444 19 0 0 chr6 26743457 26743510 -122773527 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 789 6577 215 226 23 chr6 26743510 26743768 -122773269 - Lx7 LINE L1 -2876 3004 2736 3 789 392 0 21 0 chr6 26743768 26743816 -122773221 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 3 789 6577 215 226 23 chr6 26743816 26744976 -122772061 - Lx7 LINE L1 -3145 2735 1478 3 789 281 82 20 0 chr6 26745346 26745395 -122771642 + (GAAA)n Simple_repeat Simple_repeat 4 53 0 3 789 594 240 39 0 chr6 26745437 26745566 -122771471 + MT2A LTR ERVL 2 135 -398 3 789 21 0 0 0 chr6 26746342 26746363 -122770674 + AT_rich Low_complexity Low_complexity 1 21 0 3 789 23 0 0 0 chr6 26746594 26746617 -122770420 + AT_rich Low_complexity Low_complexity 1 23 0 3 789 5311 97 7 4 chr6 26747002 26747760 -122769277 - L1_Mus3 LINE L1 -4 6634 5875 3 789 532 179 43 36 chr6 26747836 26747975 -122769062 - RMER1A Other Other -15 1015 876 3 789 2244 305 71 40 chr6 26748088 26749020 -122768017 - Lx8 LINE L1 -322 7151 6191 3 789 212 73 0 68 chr6 26750111 26750155 -122766882 + (T)n Simple_repeat Simple_repeat 1 41 0 3 789 1965 48 4 0 chr6 26750160 26750410 -122766627 - L1Md_F2 LINE L1 0 6582 6332 3 789 631 277 54 15 chr6 26750503 26750708 -122766329 - B3 SINE B2 -1 215 3 3 789 572 341 12 0 chr6 26750764 26750931 -122766106 + B3 SINE B2 36 204 -12 3 789 433 217 17 86 chr6 26751029 26751047 -122765990 - B1_Mur2 SINE Alu 0 149 139 3 789 213 39 0 0 chr6 26751047 26751073 -122765964 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 3 789 486 192 2 11 chr6 26751073 26751170 -122765867 - B1_Mur3 SINE Alu -11 138 42 3 789 224 0 0 157 chr6 26751173 26751281 -122765756 + (CTCTG)n Simple_repeat Simple_repeat 5 95 0 3 789 286 161 0 35 chr6 26751282 26751340 -122765697 - B1_Mur4 SINE Alu -90 60 5 3 789 23 68 0 0 chr6 26751436 26751480 -122765557 + AT_rich Low_complexity Low_complexity 1 44 0 3 789 625 304 90 121 chr6 26752063 26752452 -122764585 - MTE2a LTR MaLR -2 377 1 3 789 459 0 0 0 chr6 26752472 26752523 -122764514 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 789 322 177 0 16 chr6 26752656 26752719 -122764318 + L1_Mur2 LINE L1 5042 5103 -774 3 789 4560 198 57 27 chr6 26752720 26753777 -122763260 + Lx4B LINE L1 5947 7034 -24 3 789 285 29 0 0 chr6 26753781 26753815 -122763222 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 789 1053 23 0 0 chr6 26754031 26754163 -122762874 - L1Md_F2 LINE L1 -14 6568 6437 3 789 245 152 22 0 chr6 26755695 26755741 -122761296 + B1_Mur3 SINE Alu 92 138 -11 3 789 473 218 85 57 chr6 26756110 26756251 -122760786 + B1_Mus2 SINE Alu 1 145 -2 3 789 247 348 78 51 chr6 26756434 26756728 -122760309 + L1M2 LINE L1 5612 5913 -378 3 789 258 95 0 0 chr6 26757623 26757665 -122759372 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 789 2081 236 104 2 chr6 26757741 26758271 -122758766 + Lx7 LINE L1 6545 7128 -568 3 789 1267 196 47 14 chr6 26758271 26758550 -122758487 + ORR1A4 LTR MaLR 1 288 -41 3 789 1419 111 0 0 chr6 26758561 26758769 -122758268 + L1_Mus2 LINE L1 6359 6566 0 3 789 278 185 0 0 chr6 26758799 26758853 -122758184 + ORR1A4 LTR MaLR 312 365 -2 3 789 749 260 29 24 chr6 26758858 26759067 -122757970 + Lx7 LINE L1 7127 7336 -360 3 789 247 291 147 9 chr6 26759067 26759292 -122757745 + RMER12 LTR ERVK 733 988 -334 3 789 670 219 113 13 chr6 26759309 26759540 -122757497 + Lx7 LINE L1 7350 7603 -93 3 789 226 224 24 0 chr6 26759577 26759662 -122757375 + GA-rich Low_complexity Low_complexity 3 89 0 3 789 1228 69 17 0 chr6 26759663 26759838 -122757199 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 4 789 242 296 95 36 chr6 26761367 26761451 -122755586 + RSINE1 SINE B4 1 89 -76 4 789 22 35 0 0 chr6 26762136 26762165 -122754872 + AT_rich Low_complexity Low_complexity 1 29 0 4 789 228 271 67 37 chr6 26762543 26762677 -122754360 + L1M5 LINE L1 5759 5896 -283 4 789 883 316 87 34 chr6 26762875 26763255 -122753782 - MTD LTR MaLR 0 419 20 4 789 396 336 94 57 chr6 26763330 26763788 -122753249 - L1ME1 LINE L1 -33 6146 5670 4 789 2617 46 12 0 chr6 26763931 26764258 -122752779 - L1Md_T LINE L1 -1 6581 6251 4 789 947 244 12 149 chr6 26764550 26764626 -122752411 + RMER19C LTR ERVK 1 78 -533 4 789 2398 94 6 14 chr6 26764626 26764970 -122752067 - L1Md_F2 LINE L1 -13 6569 6229 4 789 1185 274 46 120 chr6 26764970 26765629 -122751408 + RMER19C LTR ERVK 42 611 0 4 789 239 357 0 0 chr6 26765678 26765762 -122751275 - B3 SINE B2 -13 203 120 4 789 4443 68 10 0 chr6 26765762 26766354 -122750683 + L1_Mus3 LINE L1 6040 6637 -1 4 789 268 256 0 60 chr6 26766363 26766446 -122750591 - B2_Mm2 SINE B2 -117 78 1 4 789 1037 89 7 20 chr6 26767093 26767242 -122749795 + B1_Mus2 SINE Alu 1 147 0 4 789 198 0 0 0 chr6 26767242 26767264 -122749773 + (A)n Simple_repeat Simple_repeat 1 22 0 4 789 291 53 17 50 chr6 26767938 26767998 -122749039 + (TTTTTG)n Simple_repeat Simple_repeat 3 60 0 4 789 1122 82 0 0 chr6 26768002 26768148 -122748889 - B1_Mus2 SINE Alu -1 146 1 4 789 315 0 0 0 chr6 26768199 26768234 -122748803 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 789 30 27 0 0 chr6 26769691 26769728 -122747309 + AT_rich Low_complexity Low_complexity 1 37 0 4 789 35 41 0 0 chr6 26770122 26770171 -122746866 + AT_rich Low_complexity Low_complexity 1 49 0 4 789 16750 177 125 19 chr6 26770658 26776515 -122740522 - Lx LINE L1 -6 6648 308 4 789 342 289 63 36 chr6 26776511 26776771 -122740266 - L1M4b LINE L1 -3733 3273 3019 4 789 4376 106 37 108 chr6 26776822 26777693 -122739344 - RMER17D2 LTR ERVK 0 809 1 4 789 189 0 0 0 chr6 26777922 26777943 -122739094 + (T)n Simple_repeat Simple_repeat 1 21 0 4 789 22 35 0 0 chr6 26778318 26778347 -122738690 + AT_rich Low_complexity Low_complexity 1 29 0 4 789 219 88 0 0 chr6 26778828 26778862 -122738175 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 789 24 32 0 0 chr6 26779278 26779309 -122737728 + AT_rich Low_complexity Low_complexity 1 31 0 4 789 359 272 149 35 chr6 26779309 26779489 -122737548 - Lx9 LINE L1 -4 7640 7425 4 789 512 73 12 0 chr6 26779489 26779571 -122737466 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 789 359 272 149 35 chr6 26779571 26779645 -122737392 - Lx9 LINE L1 -220 7424 7357 4 789 218 56 0 27 chr6 26779814 26779851 -122737186 + (TTTTTG)n Simple_repeat Simple_repeat 4 39 0 4 789 1064 83 7 0 chr6 26779860 26780005 -122737032 - B1_Mm SINE Alu 0 147 2 4 789 1153 54 0 26 chr6 26780681 26780832 -122736205 + B1_Mus1 SINE Alu 1 147 -1 4 789 202 54 33 67 chr6 26780833 26780846 -122736191 + (CAAA)n Simple_repeat Simple_repeat 2 14 0 4 789 239 93 23 0 chr6 26780846 26780889 -122736148 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 789 202 54 33 67 chr6 26780889 26780935 -122736102 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 4 789 35 88 0 0 chr6 26781245 26781336 -122735701 + AT_rich Low_complexity Low_complexity 1 91 0 4 789 2669 171 15 39 chr6 26781555 26782096 -122734941 + RLTR11A LTR ERVK 1 528 0 4 789 392 210 19 29 chr6 26782146 26782249 -122734788 + Lx6 LINE L1 7347 7448 -12 4 789 278 292 42 14 chr6 26782267 26782525 -122734512 - L1MA4 LINE L1 -382 5918 5660 4 789 897 295 14 11 chr6 26783112 26783390 -122733647 + Lx7 LINE L1 7059 7337 -359 4 789 255 31 0 0 chr6 26783432 26783464 -122733573 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 789 539 348 56 10 chr6 26783978 26784283 -122732754 - Lx7 LINE L1 -1239 6457 6139 4 789 332 97 16 0 chr6 26784293 26784355 -122732682 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 789 37972 13 1 7 chr6 26784532 26789945 -122727092 + L1Md_A LINE L1 209 5586 -297 4 789 8777 14 0 0 chr6 26789945 26790941 -122726096 + L1Md_A LINE L1 5587 6582 0 4 789 2338 270 47 22 chr6 26790941 26791127 -122725910 - Lx6 LINE L1 -247 7213 7022 4 789 3216 48 5 0 chr6 26791127 26791521 -122725516 - MTA_Mm LTR MaLR 0 396 1 4 789 2338 270 47 22 chr6 26791521 26791975 -122725062 - Lx6 LINE L1 -439 7021 6557 4 789 647 272 17 21 chr6 26791992 26792232 -122724805 - Lx7 LINE L1 -404 5476 5238 4 789 3204 86 5 2 chr6 26792324 26792768 -122724269 - L1_Mus1 LINE L1 0 6567 6123 4 789 4118 67 14 0 chr6 26792768 26793433 -122723604 + L1Md_F2 LINE L1 5447 6120 -462 4 789 494 372 126 16 chr6 26793884 26794258 -122722779 + MER77 LTR ERVL 176 590 -17 4 789 1008 133 0 0 chr6 26794561 26794741 -122722296 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 789 356 280 9 74 chr6 26794742 26794850 -122722187 - B1F SINE Alu -25 124 24 4 789 534 91 0 0 chr6 26795661 26795738 -122721299 + (TC)n Simple_repeat Simple_repeat 1 77 0 4 789 1879 149 29 0 chr6 26795769 26796085 -122720952 + ORR1A2 LTR MaLR 3 327 0 4 789 244 358 35 42 chr6 26796097 26796240 -122720797 - B1_Mus2 SINE Alu -5 142 1 4 789 372 59 0 0 chr6 26797046 26797097 -122719940 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 789 2724 51 3 3 chr6 26797635 26797988 -122719049 - L1_Mus1 LINE L1 0 6567 6215 4 789 25 0 0 0 chr6 26797990 26798015 -122719022 + AT_rich Low_complexity Low_complexity 1 25 0 4 789 1060 218 51 4 chr6 26798015 26798250 -122718787 - Lx2B LINE L1 -11 6965 6720 4 789 22 0 0 0 chr6 26798250 26798272 -122718765 + AT_rich Low_complexity Low_complexity 1 22 0 4 789 317 221 74 115 chr6 26798750 26798898 -122718139 - MLT2C2 LTR ERVL -308 156 15 4 789 23 0 0 0 chr6 26799163 26799186 -122717851 + AT_rich Low_complexity Low_complexity 1 23 0 4 789 24 32 0 0 chr6 26799494 26799525 -122717512 + AT_rich Low_complexity Low_complexity 1 31 0 4 789 260 299 61 30 chr6 26799742 26799873 -122717164 - Lx5 LINE L1 -3 7047 6913 4 789 534 264 28 7 chr6 26799899 26800040 -122716997 - Lx5 LINE L1 -420 6630 6487 4 789 941 285 7 36 chr6 26800039 26800319 -122716718 + Lx5 LINE L1 6617 6888 -162 4 789 3105 228 87 37 chr6 26800332 26801080 -122715957 + L1_Mur3 LINE L1 1333 2074 -3806 4 789 261 0 0 0 chr6 26801080 26801109 -122715928 + (CCA)n Simple_repeat Simple_repeat 3 31 0 4 789 3105 228 87 37 chr6 26801109 26801407 -122715630 + L1_Mur3 LINE L1 2075 2431 -3449 4 789 3619 176 16 9 chr6 26801406 26802266 -122714771 - Lx2B LINE L1 -922 6078 5220 4 789 4510 158 29 6 chr6 26802264 26803087 -122713950 + Lx2B LINE L1 4375 5216 -661 4 789 1595 323 16 7 chr6 26803162 26803708 -122713329 + Lx6 LINE L1 5982 6532 -928 4 789 1585 222 73 103 chr6 26803708 26804175 -122712862 - RMER19C LTR ERVK -17 594 142 4 789 21 57 0 0 chr6 26804587 26804622 -122712415 + AT_rich Low_complexity Low_complexity 1 35 0 4 789 381 131 0 0 chr6 26804772 26804833 -122712204 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 789 246 282 25 76 chr6 26805355 26805474 -122711563 + L1MCb LINE L1 674 786 -5259 4 789 367 230 63 14 chr6 26805492 26805656 -122711381 - L1MC LINE L1 -3196 2950 2779 4 789 1116 76 7 0 chr6 26806037 26806182 -122710855 + B1_Mus1 SINE Alu 3 148 0 4 789 207 0 0 0 chr6 26806191 26806214 -122710823 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 4 789 429 241 0 0 chr6 26806323 26806410 -122710627 + B1_Mus2 SINE Alu 40 126 -21 4 789 509 44 0 14 chr6 26806420 26806489 -122710548 + (GGA)n Simple_repeat Simple_repeat 3 70 0 4 789 276 324 35 18 chr6 26806972 26807085 -122709952 - MLT1A1 LTR MaLR -259 149 35 4 789 469 366 79 37 chr6 26807251 26807657 -122709380 + Lx8 LINE L1 7051 7473 0 4 789 636 14 0 0 chr6 26807809 26807882 -122709155 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 789 4848 68 37 3 chr6 26807988 26808052 -122708985 - L1Md_F2 LINE L1 -14 6568 6505 4 789 204 40 0 0 chr6 26808052 26808077 -122708960 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 4 789 4848 68 37 3 chr6 26808077 26808662 -122708375 - L1Md_F2 LINE L1 -78 6504 5898 4 789 844 304 85 117 chr6 26809270 26809474 -122707563 - Lx8 LINE L1 -209 7264 7075 4 789 1436 63 5 24 chr6 26809474 26809684 -122707353 - L1Md_F2 LINE L1 -2 6580 6375 4 789 844 304 85 117 chr6 26809684 26809874 -122707163 - Lx8 LINE L1 -399 7074 6903 4 789 3125 29 76 0 chr6 26809874 26810256 -122706781 - IAPLTR2a LTR ERVK 0 411 1 4 789 844 304 85 117 chr6 26810256 26810564 -122706473 - Lx8 LINE L1 -571 6902 6583 4 789 27 49 0 0 chr6 26810962 26811003 -122706034 + AT_rich Low_complexity Low_complexity 1 41 0 4 789 351 202 0 0 chr6 26811207 26811286 -122705751 + (TATG)n Simple_repeat Simple_repeat 2 80 0 4 789 22 56 0 0 chr6 26811338 26811374 -122705663 + AT_rich Low_complexity Low_complexity 1 36 0 4 789 5381 58 4 0 chr6 26811583 26812261 -122704776 - L1Md_F2 LINE L1 0 6582 5902 4 789 10015 50 0 0 chr6 26812261 26813594 -122703443 + L1Md_F2 LINE L1 4633 5965 -617 4 789 403 60 15 15 chr6 26814738 26814806 -122702231 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 789 260 27 27 0 chr6 26815825 26815862 -122701175 + (TAA)n Simple_repeat Simple_repeat 2 39 0 4 789 1533 80 22 4 chr6 26816337 26816563 -122700474 - L1_Mus2 LINE L1 -1 6565 6336 4 789 1243 210 58 117 chr6 26816579 26816973 -122700064 - Lx7 LINE L1 -508 7188 6818 4 789 8030 47 1 34 chr6 26817004 26818455 -122698582 - L1Md_F2 LINE L1 -1 6581 5182 4 789 3261 42 0 2 chr6 26818454 26818858 -122698179 + L1Md_F2 LINE L1 4785 5187 -696 4 789 7153 23 0 0 chr6 26818996 26819824 -122697213 + L1Md_A LINE L1 4759 5586 -297 4 789 8178 45 0 0 chr6 26819824 26820820 -122696217 + L1Md_A LINE L1 5587 6582 0 4 789 7653 37 2 1 chr6 26820834 26821752 -122695285 + L1Md_F2 LINE L1 5652 6570 -12 4 789 25 75 0 0 chr6 26822004 26822057 -122694980 + AT_rich Low_complexity Low_complexity 1 53 0 4 789 838 269 101 5 chr6 26823262 26823640 -122693397 - Lx9 LINE L1 0 7644 7231 4 789 277 368 34 17 chr6 26824079 26824198 -122692839 + B3 SINE B2 38 158 -58 4 789 37869 30 0 1 chr6 26824938 26831447 -122685590 - L1Md_T LINE L1 0 6585 9 4 789 333 388 48 61 chr6 26832630 26832943 -122684094 - MLT1I LTR MaLR -7 404 96 4 789 302 324 43 22 chr6 26832945 26833084 -122683953 - L2 LINE L2 -776 2643 2502 4 789 22 56 0 0 chr6 26833259 26833295 -122683742 + AT_rich Low_complexity Low_complexity 1 36 0 4 789 206 174 22 0 chr6 26833880 26833926 -122683111 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 789 2468 158 16 27 chr6 26833945 26834432 -122682605 - MusHAL1 LINE L1 -437 2275 1794 5 789 690 13 0 0 chr6 26834435 26834514 -122682523 + (TAG)n Simple_repeat Simple_repeat 3 81 0 5 789 5930 114 31 14 chr6 26834514 26835411 -122681626 - L1_Mus4 LINE L1 -31 6605 5694 5 789 631 129 0 10 chr6 26835397 26835499 -122681538 - MusHAL1 LINE L1 -903 1809 1709 5 789 7758 57 3 8 chr6 26835504 26836627 -122680410 - L1Md_F2 LINE L1 0 6582 5467 5 789 3697 160 40 10 chr6 26836627 26837347 -122679690 - MusHAL1 LINE L1 -1009 1703 962 5 789 1502 138 81 0 chr6 26837360 26837620 -122679417 - IAPEY3_LTR LTR ERVK -5 327 47 5 789 4577 116 10 13 chr6 26837626 26838308 -122678729 - IAPEY3-int LTR ERVK -7000 680 1 5 789 1545 151 124 0 chr6 26838311 26838602 -122678435 - IAPEY3_LTR LTR ERVK -5 327 1 5 789 2673 199 217 10 chr6 26838607 26838876 -122678161 - L1VL4 LINE L1 -3727 2159 1897 5 789 4103 117 5 0 chr6 26838876 26839457 -122677580 - MT2B2 LTR ERVL 0 584 1 5 789 2728 185 102 7 chr6 26839457 26840366 -122676671 - L1VL4 LINE L1 -3990 1896 817 5 789 28 71 0 0 chr6 26841926 26841982 -122675055 + AT_rich Low_complexity Low_complexity 1 56 0 5 789 59 0 0 0 chr6 26842001 26842060 -122674977 + AT_rich Low_complexity Low_complexity 1 59 0 5 789 269 208 30 41 chr6 26842064 26842168 -122674869 - L1MA4 LINE L1 -35 6265 6163 5 789 986 304 89 15 chr6 26843684 26844021 -122673016 + MTEa LTR MaLR 18 379 0 5 789 292 258 10 30 chr6 26844165 26844265 -122672772 + GA-rich Low_complexity Low_complexity 6 103 0 5 789 261 368 7 74 chr6 26844669 26844804 -122672233 + RSINE1 SINE B4 40 165 0 5 789 209 191 0 0 chr6 26844805 26844852 -122672185 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 5 789 219 379 64 7 chr6 26845581 26845722 -122671315 + B1F2 SINE Alu 1 149 0 5 789 539 200 9 0 chr6 26846055 26846158 -122670879 - B1_Mur2 SINE Alu 0 120 10 5 789 26 0 0 0 chr6 26847141 26847167 -122669870 + AT_rich Low_complexity Low_complexity 1 26 0 5 789 22 0 0 0 chr6 26847434 26847456 -122669581 + AT_rich Low_complexity Low_complexity 1 22 0 5 789 306 0 0 0 chr6 26847544 26847578 -122669459 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 789 267 31 0 0 chr6 26847694 26847726 -122669311 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 789 458 218 50 0 chr6 26848192 26848293 -122668744 + URR1B DNA MER1_type 47 152 -73 5 789 231 146 0 20 chr6 26848297 26848346 -122668691 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 5 789 498 83 0 0 chr6 26848347 26848419 -122668618 - B1_Mur4 SINE Alu -1 149 78 5 789 338 200 13 39 chr6 26848444 26848522 -122668515 + URR1B DNA MER1_type 138 213 -12 5 789 620 293 71 47 chr6 26848533 26848855 -122668182 + RLTR10D LTR ERVK 30 359 0 5 789 779 0 11 0 chr6 26849368 26849459 -122667578 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 5 789 22 0 0 0 chr6 26849680 26849702 -122667335 + AT_rich Low_complexity Low_complexity 1 22 0 5 789 1543 169 0 10 chr6 26849707 26849999 -122667038 - Lx5 LINE L1 -1035 6015 5727 5 789 957 268 53 67 chr6 26850170 26850529 -122666508 + ORR1E LTR MaLR 1 354 -5 5 789 2003 207 29 10 chr6 26850995 26851794 -122665243 - Lx5 LINE L1 -8 7042 6528 5 789 1422 174 4 0 chr6 26851792 26852050 -122664987 + L1_Mur2 LINE L1 3426 3684 -2193 5 789 951 127 11 6 chr6 26852361 26852535 -122664502 + (TTC)n Simple_repeat Simple_repeat 3 177 0 5 789 215 348 57 43 chr6 26852958 26853099 -122663938 + MER5B DNA MER1_type 17 159 -19 5 789 24 32 0 0 chr6 26853223 26853254 -122663783 + AT_rich Low_complexity Low_complexity 1 31 0 5 789 23 0 0 0 chr6 26855495 26855518 -122661519 + AT_rich Low_complexity Low_complexity 1 23 0 5 789 235 109 17 52 chr6 26855925 26855983 -122661054 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 5 789 27 0 0 0 chr6 26857113 26857140 -122659897 + AT_rich Low_complexity Low_complexity 1 27 0 5 789 3011 71 13 0 chr6 26857578 26857973 -122659064 + MTB LTR MaLR 1 400 0 5 789 1564 352 57 29 chr6 26857982 26859021 -122658016 + Lx8 LINE L1 6063 7130 -343 5 789 1246 224 113 42 chr6 26859042 26859085 -122657952 - ORR1C2 LTR MaLR -2 382 348 5 789 1178 266 25 172 chr6 26859085 26859799 -122657238 + RMER19C LTR ERVK 3 611 0 5 789 1246 224 113 42 chr6 26859799 26860110 -122656927 - ORR1C2 LTR MaLR -37 347 3 5 789 290 327 88 0 chr6 26861261 26861420 -122655617 + Lx8 LINE L1 7004 7176 -297 5 789 24 0 0 0 chr6 26861992 26862016 -122655021 + AT_rich Low_complexity Low_complexity 1 24 0 5 789 203 320 10 10 chr6 26863524 26863628 -122653409 + (TA)n Simple_repeat Simple_repeat 1 104 0 5 789 1023 32 0 0 chr6 26863628 26863751 -122653286 + (TG)n Simple_repeat Simple_repeat 2 124 0 5 789 1425 186 144 58 chr6 26863789 26864137 -122652900 + ORR1C1 LTR MaLR 1 378 0 5 789 394 236 22 0 chr6 26864175 26864264 -122652773 + PB1D9 SINE Alu 17 107 -13 5 789 418 302 92 8 chr6 26865590 26865710 -122651327 + ID_B1 SINE B4 88 217 -7 5 789 253 341 23 0 chr6 26865925 26866013 -122651024 - MLT1D LTR MaLR -167 338 249 5 789 22 0 0 0 chr6 26867146 26867168 -122649869 + AT_rich Low_complexity Low_complexity 1 22 0 5 789 23 33 0 0 chr6 26867297 26867327 -122649710 + AT_rich Low_complexity Low_complexity 1 30 0 5 789 420 20 0 0 chr6 26867651 26867700 -122649337 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 789 218 164 12 71 chr6 26867738 26867823 -122649214 + (TTTA)n Simple_repeat Simple_repeat 1 80 0 5 789 5290 182 50 7 chr6 26867826 26868856 -122648181 - Lx4A LINE L1 -121 6937 5822 5 789 2820 145 2 0 chr6 26868854 26869295 -122647742 + Lx4A LINE L1 5391 5832 -45 5 789 429 227 150 10 chr6 26869283 26869483 -122647554 - Lx9 LINE L1 -11 7633 7406 5 790 24 32 0 0 chr6 26871282 26871313 -122645724 + AT_rich Low_complexity Low_complexity 1 31 0 5 790 247 349 0 46 chr6 26871900 26871987 -122645050 + ID4 SINE ID 1 83 0 5 790 28 71 0 0 chr6 26874559 26874615 -122642422 + AT_rich Low_complexity Low_complexity 1 56 0 5 790 768 318 61 39 chr6 26876524 26876884 -122640153 + ORR1D2 LTR MaLR 1 368 -2 5 790 272 190 0 12 chr6 26876967 26877047 -122639990 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 5 790 397 132 0 42 chr6 26877190 26877261 -122639776 + ORR1C2 LTR MaLR 1 68 -316 5 790 306 50 0 0 chr6 26877262 26877302 -122639735 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 790 1023 213 5 46 chr6 26877302 26877519 -122639518 + ORR1C2 LTR MaLR 177 384 0 5 790 365 303 55 0 chr6 26877815 26877924 -122639113 - B3 SINE B2 -100 116 2 5 790 1086 88 0 7 chr6 26878503 26878651 -122638386 + B1_Mus1 SINE Alu 1 147 -1 5 790 2827 304 97 10 chr6 26878664 26878828 -122638209 + Lx8 LINE L1 6240 6405 -1068 5 790 369 0 0 0 chr6 26878828 26878869 -122638168 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 790 2827 304 97 10 chr6 26878869 26879793 -122637244 + Lx8 LINE L1 6406 7422 -51 5 790 958 282 111 47 chr6 26879851 26880231 -122636806 + MTD LTR MaLR 1 404 -15 5 790 364 367 28 42 chr6 26880253 26880469 -122636568 + MTD-int LTR MaLR 10 222 -1358 5 790 21 0 0 0 chr6 26880525 26880546 -122636491 + AT_rich Low_complexity Low_complexity 1 21 0 5 790 370 397 33 11 chr6 26881796 26881977 -122635060 + B3A SINE B2 1 185 -13 5 790 1042 122 17 11 chr6 26882300 26882445 -122634592 + B2_Mm2 SINE B2 1 144 -51 5 790 405 0 0 0 chr6 26882445 26882490 -122634547 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 790 1042 122 17 11 chr6 26882490 26882518 -122634519 + B2_Mm2 SINE B2 145 175 -20 5 790 2903 70 2 32 chr6 26882638 26883038 -122633999 + RLTR10 LTR ERVK 1 388 -2 5 790 519 57 14 0 chr6 26883040 26883110 -122633927 + MMERVK10C-int LTR ERVK 1 71 -7510 5 790 856 85 16 0 chr6 26883137 26883266 -122633771 + RLTR10 LTR ERVK 260 390 0 5 790 387 41 0 0 chr6 26883612 26883661 -122633376 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 790 396 0 0 0 chr6 26883661 26883704 -122633333 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 790 270 56 0 0 chr6 26884335 26884371 -122632666 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 790 1672 47 14 0 chr6 26884475 26884689 -122632348 - L1Md_F3 LINE L1 -12 6572 6356 5 790 195 42 0 0 chr6 26884726 26884750 -122632287 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 790 1141 243 166 28 chr6 26885551 26885907 -122631130 + MTC LTR MaLR 17 421 0 5 790 27520 75 3 5 chr6 26886060 26890509 -122626528 + L1Md_A LINE L1 631 5057 -826 5 790 2318 85 47 0 chr6 26890509 26890826 -122626211 + IAPEY3_LTR LTR ERVK 1 332 0 5 790 27520 70 4 3 chr6 26890826 26891361 -122625676 + L1Md_A LINE L1 5058 5586 -297 5 790 7760 60 2 1 chr6 26891361 26892344 -122624693 + L1Md_F2 LINE L1 5587 6570 -12 5 790 27520 70 4 3 chr6 26892344 26892358 -122624679 + L1Md_A LINE L1 5587 5600 -283 5 790 202 208 14 27 chr6 26892415 26892489 -122624548 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 5 790 1142 358 54 70 chr6 26892517 26892868 -122624169 + Lx8 LINE L1 6386 6745 -728 5 790 258 105 0 0 chr6 26892868 26892906 -122624131 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 790 1142 358 54 70 chr6 26892906 26893484 -122623553 + Lx8 LINE L1 6746 7300 -173 5 790 182 37 37 0 chr6 26893498 26893525 -122623512 + (TTG)n Simple_repeat Simple_repeat 2 29 0 5 790 705 334 65 12 chr6 26893715 26894036 -122623001 - MER89 LTR ERV1 -65 494 157 5 790 710 147 26 77 chr6 26894126 26894187 -122622850 + URR1A DNA MER1_type 80 143 -83 5 790 1986 62 0 11 chr6 26894187 26894447 -122622590 + L1_Mus1 LINE L1 6309 6565 -2 5 790 710 147 26 77 chr6 26894447 26894540 -122622497 + URR1A DNA MER1_type 144 226 0 5 790 238 338 0 0 chr6 26896093 26896164 -122620873 - ID4_ SINE ID -12 71 1 5 790 1093 88 0 0 chr6 26896624 26896771 -122620266 + B1_Mus1 SINE Alu 2 148 0 5 790 339 25 0 0 chr6 26896771 26896811 -122620226 + (A)n Simple_repeat Simple_repeat 1 40 0 5 790 4182 46 8 4 chr6 26896811 26897337 -122619700 + L1Md_F3 LINE L1 6057 6584 0 5 790 271 391 14 53 chr6 26897875 26898083 -122618954 + Lx8 LINE L1 7142 7341 -132 5 790 349 254 40 81 chr6 26899268 26899392 -122617645 + B4 SINE B4 2 120 -172 5 790 573 157 0 0 chr6 26899559 26899693 -122617344 + (CA)n Simple_repeat Simple_repeat 2 135 0 5 790 23 0 0 0 chr6 26900434 26900457 -122616580 + AT_rich Low_complexity Low_complexity 1 23 0 5 790 2443 59 0 0 chr6 26900457 26900760 -122616277 - L1Md_F2 LINE L1 -141 6441 6139 5 790 1103 60 0 0 chr6 26900760 26900910 -122616127 + L1Md_A LINE L1 6433 6582 0 5 790 410 56 0 0 chr6 26900912 26900966 -122616071 - ETnERV2-int LTR ERVK -5466 1940 1887 5 790 21 0 0 0 chr6 26900966 26900987 -122616050 + AT_rich Low_complexity Low_complexity 1 21 0 6 790 1618 115 73 0 chr6 26901546 26901807 -122615230 - L1_Mur2 LINE L1 -734 5143 4864 6 790 240 204 19 0 chr6 26901807 26901818 -122615219 - RLTR25B LTR ERVK -532 496 442 6 790 317 70 0 0 chr6 26901818 26901861 -122615176 - B1_Mus2 SINE Alu -64 83 41 6 790 1301 192 46 8 chr6 26901886 26902149 -122614888 + Lx4A LINE L1 6773 7045 -13 6 790 912 73 0 0 chr6 26902150 26902273 -122614764 - MTA_Mm-int LTR MaLR -975 123 1 6 790 2897 62 31 8 chr6 26902273 26902660 -122614377 - MTA_Mm LTR MaLR 0 396 1 6 790 222 91 0 0 chr6 26902788 26902821 -122614216 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 6 790 1343 73 5 20 chr6 26903350 26903547 -122613490 - B2_Mm2 SINE B2 -1 194 1 6 790 3774 7 121 0 chr6 26903656 26904096 -122612941 - MT2_Mm LTR ERVL 0 493 1 6 790 396 0 0 0 chr6 26904349 26904393 -122612644 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 790 235 231 37 37 chr6 26905602 26905683 -122611354 + Looper DNA PiggyBac 439 519 -1039 6 790 207 215 62 0 chr6 26906035 26906100 -122610937 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 6 790 659 99 10 0 chr6 26906839 26906940 -122610097 + (TA)n Simple_repeat Simple_repeat 2 103 0 6 790 903 311 42 53 chr6 26907153 26907227 -122609810 - MTEb LTR MaLR -10 369 307 6 790 4822 60 0 0 chr6 26907227 26907831 -122609206 - L1_Mus2 LINE L1 -1 6565 5962 6 790 903 311 42 53 chr6 26907831 26908116 -122608921 - MTEb LTR MaLR -73 306 14 6 790 6570 129 8 24 chr6 26909120 26910430 -122606607 + Lx LINE L1 5336 6639 -15 6 790 38389 8 0 1 chr6 26910433 26916226 -122600811 + L1Md_A LINE L1 1 5586 -297 6 790 8985 2 1 0 chr6 26916226 26917221 -122599816 + L1Md_A LINE L1 5587 6582 0 6 790 37 0 0 0 chr6 26917255 26917292 -122599745 + AT_rich Low_complexity Low_complexity 1 37 0 6 790 326 202 35 96 chr6 26917292 26917407 -122599630 + L1_Mur3 LINE L1 1355 1462 -4418 6 790 1618 27 0 0 chr6 26918335 26918522 -122598515 + B2_Mm1a SINE B2 1 187 -6 6 790 895 261 9 14 chr6 26919152 26919362 -122597675 + B3 SINE B2 8 216 0 6 790 37 62 0 0 chr6 26920605 26920670 -122596367 + AT_rich Low_complexity Low_complexity 1 65 0 6 790 225 355 8 32 chr6 26920806 26920931 -122596106 + L2 LINE L2 2379 2500 -919 6 790 1263 82 0 0 chr6 26920946 26921166 -122595871 + (CA)n Simple_repeat Simple_repeat 1 220 0 6 790 615 14 0 0 chr6 26921633 26921705 -122595332 + (CTG)n Simple_repeat Simple_repeat 2 73 0 6 790 213 235 20 0 chr6 26922171 26922222 -122594815 - B1F2 SINE Alu -93 56 5 6 790 236 281 76 33 chr6 26922206 26922298 -122594739 + B1F2 SINE Alu 22 117 -32 6 790 239 239 58 58 chr6 26922336 26922456 -122594581 - Charlie1b DNA MER1_type -45 478 359 6 790 348 277 46 39 chr6 26922467 26922726 -122594311 - Charlie1b DNA MER1_type -94 429 175 6 790 1032 139 0 0 chr6 26924357 26924529 -122592508 + (GAA)n Simple_repeat Simple_repeat 2 173 0 6 790 259 232 29 0 chr6 26924533 26924602 -122592435 + GA-rich Low_complexity Low_complexity 5 75 0 6 790 777 272 16 11 chr6 26924602 26924784 -122592253 - ORR1D1 LTR MaLR -191 183 1 6 790 1235 190 104 4 chr6 26925132 26925391 -122591646 - Lx2B LINE L1 -1 6999 6715 6 790 1208 119 0 0 chr6 26925389 26925557 -122591480 - Lx2B LINE L1 -475 6525 6358 6 790 1131 35 7 40 chr6 26925605 26925756 -122591281 - B1_Mus2 SINE Alu 0 147 2 6 790 368 261 137 40 chr6 26925892 26926140 -122590897 - L1MA8 LINE L1 -139 6152 5881 6 790 34 42 0 0 chr6 26926435 26926483 -122590554 + AT_rich Low_complexity Low_complexity 1 48 0 6 790 305 89 0 0 chr6 26927657 26927702 -122589335 - RMER19C LTR ERVK 0 611 567 6 790 5477 164 42 17 chr6 26927743 26928900 -122588137 - Lx2 LINE L1 -18 6990 5698 6 790 1405 162 4 4 chr6 26928901 26929155 -122587882 - Lx2 LINE L1 -560 5317 5064 6 790 14392 166 43 83 chr6 26929170 26931997 -122585040 - Lx2 LINE L1 -1225 4661 1830 6 790 1190 48 7 0 chr6 26931997 26932144 -122584893 - B1_Mus1 SINE Alu 0 148 1 6 790 14392 166 43 83 chr6 26932144 26932749 -122584288 - Lx2 LINE L1 -4057 1829 1367 6 790 2907 254 54 19 chr6 26932745 26933545 -122583492 - Lx6 LINE L1 -505 6955 6128 6 790 689 90 0 0 chr6 26933535 26933624 -122583413 - L1_Mus3 LINE L1 -206 6432 6344 6 790 3498 196 46 84 chr6 26933624 26933758 -122583279 - L1_Mur3 LINE L1 -644 5236 5088 6 790 216 0 0 0 chr6 26933758 26933782 -122583255 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 790 3498 196 46 84 chr6 26933782 26934587 -122582450 - L1_Mur3 LINE L1 -793 5087 4334 6 790 22 35 0 0 chr6 26935480 26935509 -122581528 + AT_rich Low_complexity Low_complexity 1 29 0 6 790 202 148 66 0 chr6 26935575 26935636 -122581401 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 790 6554 189 26 62 chr6 26935649 26938175 -122578862 - Lx5 LINE L1 -3 7047 4633 6 790 185 35 69 0 chr6 26938175 26938204 -122578833 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 790 6554 174 25 64 chr6 26938204 26938419 -122578618 - Lx5 LINE L1 -1245 4632 4421 6 790 27652 27 1 1 chr6 26938421 26942396 -122574641 - L1Md_A LINE L1 0 6582 2607 6 790 2549 126 6 122 chr6 26942389 26942924 -122574113 - L1Md_F LINE L1 -5666 853 381 6 790 10275 183 31 14 chr6 26942916 26945168 -122571869 - Lx5 LINE L1 -1448 4429 2140 6 790 16664 66 3 1 chr6 26945204 26948114 -122568923 - L1Md_F2 LINE L1 -2 6580 3662 6 790 1955 206 21 31 chr6 26948109 26948217 -122568820 - Lx5 LINE L1 -3716 2161 2050 6 790 450 101 0 0 chr6 26948217 26948286 -122568751 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 790 1955 206 21 31 chr6 26948286 26948662 -122568375 - Lx5 LINE L1 -3828 2049 1682 6 790 183 42 0 0 chr6 26948662 26948686 -122568351 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 790 294 174 32 32 chr6 26948758 26948883 -122568154 + (TA)n Simple_repeat Simple_repeat 2 126 0 6 790 222 286 0 0 chr6 26948919 26949017 -122568020 + (CA)n Simple_repeat Simple_repeat 1 98 0 6 790 563 338 51 25 chr6 26949473 26949858 -122567179 + L1MB2 LINE L1 5738 6154 -14 6 790 324 120 0 0 chr6 26949858 26949908 -122567129 + (CTTG)n Simple_repeat Simple_repeat 2 51 0 6 790 563 332 36 26 chr6 26949908 26949925 -122567112 + L1MB2 LINE L1 6155 6171 0 6 790 303 49 0 0 chr6 26951267 26951308 -122565729 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 6 790 3181 201 160 97 chr6 26951862 26951992 -122565045 - RLTR25A LTR ERVK -3 1025 895 6 790 620 36 12 0 chr6 26951992 26952075 -122564962 + (TC)n Simple_repeat Simple_repeat 1 84 0 6 790 3482 140 90 25 chr6 26952075 26952647 -122564390 - RLTR25A LTR ERVK -176 927 331 6 790 180 0 0 0 chr6 26952647 26952667 -122564370 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 790 3482 140 90 25 chr6 26952667 26952682 -122564355 - RLTR25A LTR ERVK -773 330 304 6 790 192 40 0 0 chr6 26952682 26952707 -122564330 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 790 3482 176 132 68 chr6 26952707 26952920 -122564117 - RLTR25A LTR ERVK -800 303 34 6 790 2446 110 143 23 chr6 26952920 26953395 -122563642 - RLTR47_MM LTR ERV1 0 532 1 6 790 3181 201 160 97 chr6 26953395 26953425 -122563612 - RLTR25A LTR ERVK -995 33 5 6 790 2259 243 62 40 chr6 26953426 26954203 -122562834 + Lx7 LINE L1 5067 5860 -20 6 790 744 187 32 0 chr6 26954255 26954378 -122562659 + ETnERV2-int LTR ERVK 7070 7196 -210 6 790 1229 302 59 46 chr6 26954779 26955324 -122561713 + Lx7 LINE L1 5895 6446 -1250 6 790 676 273 139 25 chr6 26955324 26955568 -122561469 - RLTR25A LTR ERVK 0 1028 757 6 790 5609 210 26 78 chr6 26955625 26957029 -122560008 + Lx4B LINE L1 5713 7043 -15 6 790 860 157 36 42 chr6 26957451 26957469 -122559568 - RLTR25A LTR ERVK -256 772 756 6 790 3181 149 65 95 chr6 26957469 26958204 -122558833 - RLTR19B LTR ERVK -1 714 2 6 790 860 157 36 42 chr6 26958204 26958351 -122558686 - RLTR25A LTR ERVK -273 755 608 6 790 22865 132 42 22 chr6 26958351 26964188 -122552849 - L1Md_F2 LINE L1 -13 6569 256 6 790 2576 198 66 2 chr6 26964192 26964725 -122552312 - RLTR25A LTR ERVK -412 616 1 6 790 762 315 68 53 chr6 26964726 26965048 -122551989 + Lx7 LINE L1 6442 6768 -928 6 790 332 136 22 43 chr6 26965056 26965194 -122551843 + (CAAA)n Simple_repeat Simple_repeat 2 136 0 6 790 960 321 51 16 chr6 26965195 26965408 -122551629 + Lx7 LINE L1 6771 6986 -710 6 790 6147 110 24 13 chr6 26965408 26966360 -122550677 + Lx3_Mus LINE L1 6028 6990 -19 6 790 267 31 0 0 chr6 26966360 26966392 -122550645 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 6 790 960 321 51 16 chr6 26966392 26966607 -122550430 + Lx7 LINE L1 6987 7213 -483 6 790 35 54 0 0 chr6 26966661 26966717 -122550320 + AT_rich Low_complexity Low_complexity 1 56 0 6 790 207 69 0 0 chr6 26967388 26967417 -122549620 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 790 282 282 106 31 chr6 26967745 26967906 -122549131 + L1MD LINE L1 4018 4190 -1956 6 790 289 367 44 11 chr6 26968050 26968141 -122548896 + B3A SINE B2 89 182 -16 6 790 25 0 0 0 chr6 26968152 26968177 -122548860 + AT_rich Low_complexity Low_complexity 1 25 0 6 790 812 324 24 20 chr6 26968293 26968542 -122548495 + B4 SINE B4 43 292 0 6 790 22 0 0 0 chr6 26970323 26970345 -122546692 + AT_rich Low_complexity Low_complexity 1 22 0 6 790 1023 299 67 37 chr6 26971598 26972004 -122545033 - MER110 LTR ERV1 -11 480 63 6 790 294 29 0 0 chr6 26972053 26972088 -122544949 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 790 591 27 0 0 chr6 26972090 26972163 -122544874 + (GA)n Simple_repeat Simple_repeat 1 73 0 6 790 325 286 286 24 chr6 26972186 26972476 -122544561 - ORR1D2 LTR MaLR -2 368 3 6 790 235 230 16 47 chr6 26972820 26972884 -122544153 - B1F SINE Alu -1 148 87 6 790 978 113 0 47 chr6 26973126 26973275 -122543762 + B1_Mus1 SINE Alu 1 142 -6 6 790 189 0 0 0 chr6 26973295 26973316 -122543721 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 6 790 22 0 0 0 chr6 26974135 26974157 -122542880 + AT_rich Low_complexity Low_complexity 1 22 0 6 790 958 235 124 48 chr6 26974249 26974582 -122542455 + ORR1E LTR MaLR 1 379 0 6 790 947 79 7 14 chr6 26974886 26975028 -122542009 - L1Md_F2 LINE L1 -12 6570 6430 6 790 1328 80 0 22 chr6 26975028 26975207 -122541830 + L1_Mus1 LINE L1 6123 6297 -270 6 790 348 267 0 11 chr6 26975207 26975298 -122541739 + ORR1D2 LTR MaLR 281 370 0 6 790 660 156 4 7 chr6 26975617 26975731 -122541306 - ORR1D2 LTR MaLR 0 379 269 6 790 23 0 0 0 chr6 26975744 26975767 -122541270 + AT_rich Low_complexity Low_complexity 1 23 0 6 790 1106 240 18 9 chr6 26975772 26975995 -122541042 + ORR1C1 LTR MaLR 93 317 -61 6 790 970 126 97 21 chr6 26975995 26976181 -122540856 + L1_Mus4 LINE L1 6410 6609 -27 6 790 2172 126 15 0 chr6 26976191 26976525 -122540512 + L1_Mus3 LINE L1 6216 6554 -84 6 790 341 127 0 18 chr6 26976549 26976605 -122540432 + ORR1C1 LTR MaLR 340 394 0 6 790 778 295 141 19 chr6 26976605 26976868 -122540169 - ORR1D2 LTR MaLR -75 295 1 6 790 1278 204 11 91 chr6 26977150 26977523 -122539514 - Lx7 LINE L1 0 7696 7354 6 790 243 88 0 0 chr6 26978357 26978391 -122538646 + (T)n Simple_repeat Simple_repeat 1 34 0 6 790 266 222 28 0 chr6 26979374 26979446 -122537591 + Lx6 LINE L1 6696 6769 -691 6 790 1200 256 85 7 chr6 26979497 26979780 -122537257 - RMER1B Other Other -687 379 75 6 790 1808 176 19 77 chr6 26979865 26980241 -122536796 + ORR1B1 LTR MaLR 41 394 0 7 790 225 0 0 0 chr6 26980729 26980754 -122536283 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 790 305 358 0 0 chr6 26981121 26981202 -122535835 - ID4_ SINE ID -1 82 2 7 790 272 297 20 0 chr6 26981373 26981474 -122535563 + L1MA5 LINE L1 6195 6297 -3 7 790 756 261 98 42 chr6 26981654 26982010 -122535027 + MTE2a LTR MaLR 1 376 -3 7 790 36 40 0 0 chr6 26982411 26982461 -122534576 + AT_rich Low_complexity Low_complexity 1 50 0 7 790 7973 53 4 3 chr6 26982762 26983775 -122533262 - L1Md_F2 LINE L1 -9 6573 5587 7 790 376 371 52 14 chr6 26984123 26984336 -122532701 + L2a LINE L2 3039 3259 -167 7 790 333 0 0 0 chr6 26984843 26984880 -122532157 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 790 21 57 0 0 chr6 26985654 26985689 -122531348 + AT_rich Low_complexity Low_complexity 1 35 0 7 790 213 326 59 52 chr6 26987613 26987749 -122529288 - MIR SINE MIR -47 215 79 7 790 686 163 11 17 chr6 26988039 26988220 -122528817 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 7 790 434 331 45 0 chr6 26988322 26988455 -122528582 + B4 SINE B4 14 152 -140 7 790 222 318 0 0 chr6 26988509 26988575 -122528462 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 790 17902 127 25 14 chr6 26988701 26991819 -122525218 - L1_Mus3 LINE L1 -8 6630 3478 7 790 189 0 0 0 chr6 26991819 26991840 -122525197 + (TTG)n Simple_repeat Simple_repeat 1 21 0 7 790 17902 142 29 12 chr6 26991840 26992592 -122524445 - L1_Mus3 LINE L1 -2406 3477 2724 7 790 1296 231 174 6 chr6 26992592 26992954 -122524083 - RMER17B LTR ERVK 0 958 536 7 790 801 308 75 55 chr6 26993334 26993771 -122523266 + Lx8 LINE L1 6729 7174 -299 7 790 243 303 65 33 chr6 26993839 26993931 -122523106 + RMER15 LTR ERVL 371 465 -110 7 790 3397 28 2 0 chr6 26994539 26994934 -122522103 - MTA_Mm LTR MaLR 0 396 1 7 790 9048 34 5 1 chr6 26994934 26996028 -122521009 - MTA_Mm-int LTR MaLR 0 1098 1 7 790 3434 23 2 0 chr6 26996028 26996423 -122520614 - MTA_Mm LTR MaLR 0 396 1 7 790 480 277 79 46 chr6 26996644 26996973 -122520064 + L1M3a LINE L1 798 1137 -4818 7 790 434 333 32 13 chr6 26997230 26997385 -122519652 - MLT1A LTR MaLR -216 158 1 7 790 237 178 0 0 chr6 26997424 26997469 -122519568 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 790 21 71 0 0 chr6 26997580 26997622 -122519415 + AT_rich Low_complexity Low_complexity 1 42 0 7 790 200 143 0 28 chr6 26999396 26999432 -122517605 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 790 1566 216 56 16 chr6 26999446 26999823 -122517214 - Lx5 LINE L1 -860 6190 5799 7 790 489 123 12 12 chr6 26999821 26999903 -122517134 + Lx4B LINE L1 5604 5685 -1373 7 790 480 206 20 0 chr6 26999897 26999999 -122517038 - L1_Mur2 LINE L1 -804 5073 4970 7 790 1376 188 0 11 chr6 27000001 27000270 -122516767 - L1_Mur2 LINE L1 -910 4967 4702 1 790 803 297 105 40 chr6 27000373 27000724 -122516313 - MTD LTR MaLR 0 419 46 2 791 4338 114 138 16 chr6 27001248 27001703 -122515334 - RMER17D LTR ERVK -2 887 349 3 791 1016 39 0 8 chr6 27001703 27001833 -122515204 + (GGAGA)n Simple_repeat Simple_repeat 3 131 0 4 791 4338 114 138 16 chr6 27001833 27002168 -122514869 - RMER17D LTR ERVK -541 348 1 3 791 21 36 0 0 chr6 27002426 27002454 -122514583 + AT_rich Low_complexity Low_complexity 1 28 0 5 791 21 71 0 0 chr6 27003255 27003297 -122513740 + AT_rich Low_complexity Low_complexity 1 42 0 6 791 351 0 0 0 chr6 27003390 27003429 -122513608 + (TA)n Simple_repeat Simple_repeat 2 40 0 7 791 23 0 0 0 chr6 27003462 27003485 -122513552 + AT_rich Low_complexity Low_complexity 1 23 0 8 791 486 336 57 16 chr6 27003644 27003828 -122513209 + L1VL4 LINE L1 262 451 -5851 9 791 216 0 0 0 chr6 27003828 27003852 -122513185 + (CACCC)n Simple_repeat Simple_repeat 2 25 0 1 791 486 310 92 76 chr6 27003852 27004103 -122512934 + L1VL4 LINE L1 244 515 -5787 9 791 777 119 6 38 chr6 27004291 27004448 -122512589 - RMER17B LTR ERVK -495 463 312 1 791 219 69 0 0 chr6 27005058 27005087 -122511950 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 791 215 143 59 39 chr6 27007241 27007292 -122509745 + A-rich Low_complexity Low_complexity 3 54 0 1 791 266 362 73 73 chr6 27007571 27007860 -122509177 - B4A SINE B4 0 292 4 1 791 802 118 8 16 chr6 27007860 27007989 -122509048 - L1_Mm LINE L1 -376 5507 5380 1 791 247 177 16 16 chr6 27008008 27008071 -122508966 + GA-rich Low_complexity Low_complexity 2 64 0 1 791 313 290 106 28 chr6 27008079 27008170 -122508867 + HAL1-3A_ME LINE L1 2284 2384 -474 1 791 1122 125 0 0 chr6 27008170 27008346 -122508691 + (GGAGA)n Simple_repeat Simple_repeat 1 176 0 1 791 313 290 106 28 chr6 27008346 27008396 -122508641 + HAL1-3A_ME LINE L1 2385 2436 -422 1 791 671 229 6 0 chr6 27008418 27008588 -122508449 + GA-rich Low_complexity Low_complexity 5 175 0 1 791 658 285 57 0 chr6 27008891 27009134 -122507903 + Lx8 LINE L1 6943 7209 -264 2 791 1091 126 0 0 chr6 27009137 27009296 -122507741 + B2_Mm2 SINE B2 2 160 -35 2 791 339 304 89 71 chr6 27009297 27009566 -122507471 + Lx8 LINE L1 7196 7469 -4 2 791 633 14 0 0 chr6 27009642 27009716 -122507321 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 791 342 45 0 0 chr6 27010201 27010245 -122506792 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 791 623 255 44 6 chr6 27010976 27011134 -122505903 + MIR SINE MIR 89 252 -10 2 791 363 375 13 7 chr6 27011588 27011741 -122505296 - RSINE1 SINE B4 0 165 12 2 791 710 326 69 20 chr6 27012901 27013292 -122503745 - L1MB1 LINE L1 -192 5976 5567 2 791 22 0 0 0 chr6 27013448 27013470 -122503567 + AT_rich Low_complexity Low_complexity 1 22 0 2 791 183 339 91 38 chr6 27014039 27014171 -122502866 + L2c LINE L2 3083 3221 -166 2 791 28 61 0 0 chr6 27016074 27016123 -122500914 + AT_rich Low_complexity Low_complexity 1 49 0 2 791 1342 248 95 9 chr6 27016607 27016945 -122500092 + ORR1D1 LTR MaLR 1 367 -7 3 791 401 387 77 42 chr6 27018080 27018339 -122498698 + B4A SINE B4 2 269 -23 3 791 1830 88 48 4 chr6 27018638 27018910 -122498127 - Lx3_Mus LINE L1 -5 7004 6721 3 791 607 171 9 0 chr6 27018910 27019015 -122498022 + RMER6C LTR ERVK 585 690 0 3 791 4365 240 79 9 chr6 27019015 27020508 -122496529 - Lx7 LINE L1 -749 6947 5356 3 791 342 0 0 0 chr6 27020508 27020546 -122496491 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 791 2766 197 70 6 chr6 27020546 27020660 -122496377 - Lx7 LINE L1 -525 5355 5209 3 791 234 128 0 0 chr6 27020661 27020700 -122496337 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 791 574 165 47 0 chr6 27020693 27020863 -122496174 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 791 3371 178 32 18 chr6 27020915 27021600 -122495437 - Lx7 LINE L1 -671 5209 4515 3 791 944 194 54 17 chr6 27021591 27021832 -122495205 - Lx7 LINE L1 -1618 4262 4013 3 791 1333 196 26 19 chr6 27021936 27022243 -122494794 + Lx7 LINE L1 7356 7664 -32 3 791 26 0 0 0 chr6 27022243 27022269 -122494768 + AT_rich Low_complexity Low_complexity 1 26 0 3 791 21 57 0 0 chr6 27022315 27022350 -122494687 + AT_rich Low_complexity Low_complexity 1 35 0 4 791 23 33 0 0 chr6 27022684 27022714 -122494323 + AT_rich Low_complexity Low_complexity 1 30 0 4 791 511 347 37 0 chr6 27023129 27023319 -122493718 - MamRep605 Unknown Unknown -84 792 596 4 791 468 291 0 20 chr6 27023750 27023901 -122493136 + B1F SINE Alu 1 148 -1 4 791 37 62 0 0 chr6 27024011 27024076 -122492961 + AT_rich Low_complexity Low_complexity 1 65 0 4 791 265 307 9 73 chr6 27024477 27024586 -122492451 + ID2 SINE ID 2 103 -49 4 791 293 298 133 34 chr6 27024863 27025127 -122491910 + Lx9 LINE L1 7350 7639 -5 4 791 449 328 39 5 chr6 27025411 27025616 -122491421 + B3 SINE B2 4 215 -1 4 791 1598 205 38 69 chr6 27025670 27025894 -122491143 - MTB_Mm LTR MaLR 0 407 182 4 791 405 81 0 0 chr6 27025894 27025956 -122491081 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 791 468 0 0 0 chr6 27025958 27026010 -122491027 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 791 1014 73 0 0 chr6 27026011 27026147 -122490890 + (GA)n Simple_repeat Simple_repeat 1 136 0 5 791 1598 205 38 69 chr6 27026147 27026337 -122490700 - MTB_Mm LTR MaLR -226 181 1 4 791 260 378 70 44 chr6 27026424 27026582 -122490455 + RSINE1 SINE B4 3 164 -1 5 791 498 33 0 0 chr6 27026590 27026650 -122490387 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 791 324 0 0 0 chr6 27026650 27026685 -122490352 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 791 2798 98 0 5 chr6 27026881 27027271 -122489766 - L1_Mus2 LINE L1 -1 6565 6178 5 791 32714 79 0 16 chr6 27028320 27033481 -122483556 + L1Md_F2 LINE L1 511 5585 -298 5 791 7857 53 1 16 chr6 27033482 27034481 -122482556 + L1Md_F2 LINE L1 5587 6570 -12 5 791 1005 336 43 18 chr6 27034718 27035115 -122481922 + Lx8 LINE L1 6262 6668 -805 5 791 459 0 0 0 chr6 27037870 27037921 -122479116 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 791 590 244 44 33 chr6 27037973 27038155 -122478882 - Lx9 LINE L1 -292 7352 7169 5 791 6778 191 35 15 chr6 27038497 27040003 -122477034 - Lx5 LINE L1 -65 6985 5444 6 791 4965 173 71 2 chr6 27040004 27040901 -122476136 - Lx4A LINE L1 -2 7056 6098 6 791 4802 153 29 43 chr6 27040906 27041862 -122475175 + RMER17B LTR ERVK 16 958 0 6 791 2267 204 62 44 chr6 27041928 27042525 -122474512 - RLTR25A LTR ERVK 0 1028 1 6 791 12408 166 51 120 chr6 27042525 27043821 -122473216 - Lx4A LINE L1 -1013 6045 4636 6 791 315 0 0 0 chr6 27043821 27043856 -122473181 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6 791 12408 167 42 179 chr6 27043856 27044483 -122472554 - Lx4A LINE L1 -1242 4635 4055 6 791 804 281 251 49 chr6 27044483 27044954 -122472083 + RMER2 LTR ERV1 2 567 0 6 791 12408 167 42 179 chr6 27044954 27046606 -122470431 - Lx4A LINE L1 -1242 4054 2523 6 791 653 130 92 0 chr6 27046618 27046749 -122470288 + L1_Mur2 LINE L1 3054 3196 -2681 6 791 551 121 50 0 chr6 27046747 27046846 -122470191 - L1_Mur2 LINE L1 -3375 2502 2399 6 791 678 235 8 1 chr6 27046860 27047025 -122470012 - L1_Mur2 LINE L1 -6577 1151 943 6 791 542 217 10 10 chr6 27047417 27047552 -122469485 - B1_Mur3 SINE Alu -5 144 9 6 791 446 289 52 74 chr6 27048727 27048778 -122468259 + CYRA11_Mm Unknown Y-chromosome 118 162 -455 6 791 1019 218 22 18 chr6 27048778 27049002 -122468035 - URR1B DNA MER1_type 0 225 1 7 791 212 222 15 31 chr6 27049700 27049830 -122467207 + (CATA)n Simple_repeat Simple_repeat 3 130 0 7 791 317 215 45 27 chr6 27049854 27049964 -122467073 + (CATATA)n Simple_repeat Simple_repeat 3 114 0 7 791 399 213 22 22 chr6 27049969 27050147 -122466890 + (CATA)n Simple_repeat Simple_repeat 2 179 0 7 791 280 362 21 0 chr6 27052197 27052291 -122464746 - MER2 DNA MER2_type -1 344 249 7 791 821 262 9 9 chr6 27052296 27052508 -122464529 + B3 SINE B2 5 216 0 7 791 753 278 66 12 chr6 27052532 27052776 -122464261 - MER2 DNA MER2_type -82 263 7 7 791 286 275 49 84 chr6 27053300 27053443 -122463594 + MamRep605 Unknown Unknown 21 158 -718 7 791 267 328 0 0 chr6 27053764 27053831 -122463206 + MLT1A1 LTR MaLR 61 127 -281 7 791 229 292 81 32 chr6 27053989 27054113 -122462924 + MLT1A1 LTR MaLR 269 398 -10 7 791 460 184 103 0 chr6 27054694 27054781 -122462256 + RLTR20B1 LTR ERVK 1 96 -467 7 791 4502 135 11 10 chr6 27054783 27055503 -122461534 + Lx LINE L1 5931 6651 -3 7 791 515 259 0 10 chr6 27055645 27055774 -122461263 + MTE2b LTR MaLR 266 405 -14 8 791 2987 321 115 20 chr6 27055794 27057132 -122459905 + MTE2a-int LTR MaLR 78 1571 -9 8 791 226 306 83 0 chr6 27057144 27057216 -122459821 + MTE2a LTR MaLR 4 81 -298 8 791 319 287 68 17 chr6 27057225 27057342 -122459695 + MTE2a LTR MaLR 248 370 -9 8 791 373 109 0 0 chr6 27058063 27058118 -122458919 - ORR1B1 LTR MaLR 0 394 340 8 791 33488 72 2 15 chr6 27058118 27064353 -122452684 - L1Md_F2 LINE L1 0 6582 469 8 791 4570 70 0 0 chr6 27064365 27064949 -122452088 - L1Md_F2 LINE L1 -12 6570 5987 8 791 1641 189 16 3 chr6 27064949 27065257 -122451780 - ORR1B1 LTR MaLR -80 314 3 8 791 554 303 83 34 chr6 27065643 27065848 -122451189 + Tigger5 DNA MER2_type 31 245 -2161 8 791 226 343 20 10 chr6 27065846 27065946 -122451091 + Tigger5 DNA MER2_type 2293 2393 -13 8 791 549 0 0 0 chr6 27065948 27066009 -122451028 + (GA)n Simple_repeat Simple_repeat 2 62 0 8 791 341 320 89 72 chr6 27066014 27066298 -122450739 - MLT2D LTR ERVL -88 309 3 8 791 3112 71 2 8 chr6 27066423 27066821 -122450216 + MTA_Mm LTR MaLR 1 396 0 8 791 700 247 0 6 chr6 27066972 27067147 -122449890 - L1VL4 LINE L1 -5619 683 510 8 791 2965 18 3 0 chr6 27067182 27067518 -122449519 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 791 52855 21 18 6 chr6 27067518 27073916 -122443121 + IAPEz-int LTR ERVK 8 6481 0 9 791 2965 18 3 0 chr6 27073916 27074252 -122442785 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 791 2373 215 34 58 chr6 27074679 27075425 -122441612 + Lx3A LINE L1 3 730 -6254 9 791 2509 119 44 48 chr6 27075425 27075902 -122441135 - IAPLTR2_Mm LTR ERVK 0 475 1 9 791 19868 18 6 0 chr6 27075902 27078254 -122438783 - IAPEz-int LTR ERVK 0 6481 4117 9 791 446 66 0 0 chr6 27078246 27078307 -122438730 - IAPEz-int LTR ERVK -2896 3585 3525 9 791 831 89 24 0 chr6 27078307 27078430 -122438607 - IAPEy-int LTR ERVK -2587 4926 4801 9 791 1716 119 4 4 chr6 27078427 27078689 -122438348 - IAPEz-int LTR ERVK -5183 2497 2236 9 791 424 38 0 0 chr6 27078688 27078741 -122438296 - IAPEz-int LTR ERVK -5070 1411 1359 9 791 4916 49 9 13 chr6 27078741 27079411 -122437626 - IAPEz-int LTR ERVK -5819 662 3 9 791 2503 121 44 48 chr6 27079413 27079890 -122437147 - IAPLTR2_Mm LTR ERVK 0 475 1 9 791 28021 93 42 7 chr6 27079890 27084901 -122432136 + Lx3A LINE L1 725 5909 -1072 9 791 183 80 0 0 chr6 27084901 27084926 -122432111 + (TAAG)n Simple_repeat Simple_repeat 2 26 0 9 791 8355 117 15 17 chr6 27084926 27085989 -122431048 + Lx3A LINE L1 5910 6965 -16 9 791 327 49 0 0 chr6 27085989 27086030 -122431007 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 9 791 1168 235 56 21 chr6 27086976 27087203 -122429834 + Lx6 LINE L1 1834 2065 -3815 9 791 287 85 21 0 chr6 27087203 27087250 -122429787 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 791 1168 235 56 21 chr6 27087250 27087400 -122429637 + Lx6 LINE L1 2066 2224 -3656 9 791 1229 230 74 10 chr6 27087893 27088374 -122428663 + Lx6 LINE L1 2209 2739 -3141 9 791 6322 207 35 3 chr6 27088363 27089900 -122427137 + Lx6 LINE L1 3871 5457 -423 9 791 3647 32 2 104 chr6 27089913 27090442 -122426595 - IAPLTR2_Mm LTR ERVK 0 475 1 9 791 6223 54 13 1 chr6 27090444 27091263 -122425774 - IAPEz-int LTR ERVK -2 6479 5651 9 791 2580 58 0 3 chr6 27091256 27091599 -122425438 - IAPEz-int LTR ERVK -4781 1700 1359 9 791 3324 70 1 14 chr6 27091599 27092252 -122424785 - IAPEz-int LTR ERVK -5819 662 168 9 791 244 244 0 0 chr6 27092252 27092297 -122424740 - RLTR27 LTR ERVK -34 275 231 9 791 574 106 16 124 chr6 27092297 27092426 -122424611 - IAPEz-int LTR ERVK -6358 123 9 9 791 3624 36 2 104 chr6 27092427 27092956 -122424081 - IAPLTR2_Mm LTR ERVK 0 475 1 9 791 5683 244 42 30 chr6 27093006 27094718 -122422319 + Lx6 LINE L1 5546 7291 -169 9 791 2144 119 9 9 chr6 27094720 27095041 -122421996 + Lx3_Mus LINE L1 6678 6998 -11 1 791 636 14 0 0 chr6 27095090 27095163 -122421874 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 1 791 275 281 37 37 chr6 27095224 27095331 -122421706 + Lx7 LINE L1 7206 7312 -384 1 791 27 49 0 0 chr6 27095543 27095584 -122421453 + AT_rich Low_complexity Low_complexity 1 41 0 1 791 588 188 25 17 chr6 27095604 27095723 -122421314 - MTC LTR MaLR -301 120 1 1 791 500 251 171 11 chr6 27095785 27095966 -122421071 - MER34 LTR ERV1 -322 220 11 1 791 31 58 0 0 chr6 27096287 27096339 -122420698 + AT_rich Low_complexity Low_complexity 1 52 0 1 791 206 250 0 14 chr6 27096839 27096912 -122420125 + CT-rich Low_complexity Low_complexity 1 72 0 1 791 560 280 13 45 chr6 27097427 27097584 -122419453 + RSINE1 SINE B4 14 165 0 1 791 351 0 0 0 chr6 27097584 27097623 -122419414 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 791 426 39 0 0 chr6 27097623 27097675 -122419362 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 791 333 0 0 0 chr6 27097675 27097712 -122419325 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 791 1444 269 114 34 chr6 27098324 27098789 -122418248 - RLTR20B3 LTR ERVK -56 521 20 1 791 3044 53 2 46 chr6 27098826 27099238 -122417799 - L1_Mus2 LINE L1 -2 6564 6171 1 791 284 323 85 39 chr6 27099346 27099613 -122417424 + MLT1D LTR MaLR 39 370 -135 1 791 298 234 25 25 chr6 27099647 27099726 -122417311 + MLT1D LTR MaLR 424 502 -3 1 791 261 119 0 0 chr6 27099745 27099787 -122417250 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 791 389 226 42 43 chr6 27099968 27100072 -122416965 + MLT1A0 LTR MaLR 226 339 -51 1 791 387 0 0 0 chr6 27100727 27100770 -122416267 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 791 270 81 0 0 chr6 27101805 27101842 -122415195 + (A)n Simple_repeat Simple_repeat 1 37 0 1 791 23 68 0 0 chr6 27102509 27102553 -122414484 + AT_rich Low_complexity Low_complexity 1 44 0 1 791 338 241 184 31 chr6 27102609 27102772 -122414265 - Lx8 LINE L1 -25 7448 7261 1 791 477 62 0 0 chr6 27102844 27102909 -122414128 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 791 1024 306 38 30 chr6 27102909 27103306 -122413731 - Lx8 LINE L1 -806 6667 6268 1 791 255 250 39 29 chr6 27103672 27103775 -122413262 - L1M6 LINE L1 -4704 1792 1689 1 791 230 200 55 0 chr6 27104663 27104718 -122412319 - ORR1B2 LTR MaLR -1 366 309 1 791 4068 178 62 14 chr6 27104720 27105507 -122411530 - Lx2B LINE L1 -14 6986 6157 1 791 4009 116 39 42 chr6 27105507 27106261 -122410776 - RMER17A LTR ERVK 0 751 1 1 791 4068 178 62 14 chr6 27106261 27106311 -122410726 - Lx2B LINE L1 -844 6156 6109 1 791 1613 200 12 64 chr6 27106312 27106654 -122410383 - ORR1B2 LTR MaLR -43 324 1 1 791 240 276 17 0 chr6 27107439 27107497 -122409540 + ID SINE ID 17 75 -149 1 791 675 295 119 43 chr6 27107648 27108017 -122409020 - MER31A LTR ERV1 -87 398 2 1 791 1484 185 68 70 chr6 27108156 27108511 -122408526 - ORR1B1 LTR MaLR 0 394 41 1 791 885 202 52 59 chr6 27108547 27109035 -122408002 - RLTR20A LTR ERVK 0 551 3 1 791 3435 47 4 2 chr6 27109035 27109486 -122407551 - L1_Mus2 LINE L1 -523 6043 5592 1 791 307 291 43 0 chr6 27109491 27109608 -122407429 - Lx8 LINE L1 -609 6864 6743 1 791 1215 167 44 0 chr6 27110136 27110364 -122406673 + Lx9 LINE L1 6831 7068 -576 1 791 2040 120 0 0 chr6 27110899 27111207 -122405830 - L1_Mm LINE L1 -27 5856 5549 1 791 2765 112 0 19 chr6 27111207 27111701 -122405336 + L1_Mus4 LINE L1 6215 6636 0 1 791 224 366 49 14 chr6 27113007 27113151 -122403886 - L2a LINE L2 -265 3161 3013 1 791 510 300 85 28 chr6 27113375 27113622 -122403415 + Charlie5 DNA MER1_type 2235 2495 -129 1 791 26 64 0 0 chr6 27114796 27114843 -122402194 + AT_rich Low_complexity Low_complexity 1 47 0 1 791 306 0 0 0 chr6 27114863 27114897 -122402140 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 791 619 304 17 65 chr6 27114979 27115211 -122401826 - B4A SINE B4 -66 226 6 1 791 486 0 0 0 chr6 27117361 27117415 -122399622 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 1 791 990 90 7 22 chr6 27117415 27117552 -122399485 - B1_Mm SINE Alu -12 135 1 1 791 240 309 64 0 chr6 27117655 27117765 -122399272 + BC1_Mm scRNA scRNA 2 118 -34 1 791 260 241 37 15 chr6 27118344 27118479 -122398558 + (TA)n Simple_repeat Simple_repeat 2 139 0 1 791 309 174 10 98 chr6 27118785 27118887 -122398150 - Lx2B LINE L1 -781 6219 6127 1 791 183 146 0 0 chr6 27118911 27118952 -122398085 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1 791 4888 151 66 63 chr6 27118960 27120220 -122396817 - L1_Mus3 LINE L1 -6 6632 5384 1 791 4398 167 33 15 chr6 27120221 27121010 -122396027 + Lx2B LINE L1 6196 6998 -2 1 791 691 288 203 18 chr6 27122456 27122943 -122394094 - Lx6 LINE L1 -1 7459 6506 1 791 847 317 44 14 chr6 27122992 27123350 -122393687 - Lx6 LINE L1 -704 6346 5955 1 791 2626 181 64 69 chr6 27123349 27123495 -122393542 + Lx5 LINE L1 5249 5401 -479 1 791 698 146 120 23 chr6 27123495 27123628 -122393409 + B1_Mus2 SINE Alu 1 146 -1 1 791 2626 164 66 34 chr6 27123628 27124161 -122392876 + Lx5 LINE L1 5402 5933 -1117 1 791 576 0 0 0 chr6 27124858 27124922 -122392115 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 791 243 0 0 0 chr6 27124924 27124951 -122392086 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 791 274 346 103 0 chr6 27124961 27125068 -122391969 - RSINE1 SINE B4 -45 120 3 1 791 300 208 184 68 chr6 27125248 27125351 -122391686 + HAL1-3A_ME LINE L1 1976 2090 -768 1 791 27 0 0 0 chr6 27125644 27125671 -122391366 + AT_rich Low_complexity Low_complexity 1 27 0 1 791 1495 216 62 11 chr6 27127144 27127500 -122389537 - ORR1D1 LTR MaLR 0 374 1 1 791 2835 174 64 97 chr6 27128001 27128890 -122388147 + RMER6C LTR ERVK 1 720 -36 1 791 22 0 0 0 chr6 27129050 27129072 -122387965 + AT_rich Low_complexity Low_complexity 1 22 0 1 791 317 293 84 25 chr6 27129118 27129237 -122387800 - L1M5 LINE L1 -3623 2523 2398 1 791 1246 173 149 3 chr6 27129380 27129437 -122387600 - Lx LINE L1 0 7644 7583 1 791 651 57 0 0 chr6 27129437 27129525 -122387512 + (TA)n Simple_repeat Simple_repeat 2 89 0 1 791 1246 173 149 3 chr6 27129525 27129775 -122387262 - Lx LINE L1 -62 7582 7293 1 791 224 163 23 0 chr6 27130205 27130248 -122386789 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 1 791 4657 129 16 72 chr6 27130568 27131213 -122385824 - Lx LINE L1 0 6654 6041 1 791 633 27 0 0 chr6 27131213 27131288 -122385749 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 791 4657 129 16 72 chr6 27131288 27131304 -122385733 - Lx LINE L1 -614 6040 6040 1 791 1051 92 21 0 chr6 27131304 27131446 -122385591 - B1_Mus2 SINE Alu -1 146 2 1 791 4657 129 16 72 chr6 27131446 27131615 -122385422 - Lx LINE L1 -614 6040 5870 1 792 252 333 9 9 chr6 27132023 27132132 -122384905 + CT-rich Low_complexity Low_complexity 1 109 0 1 792 27808 80 71 38 chr6 27133797 27137894 -122379143 - L1Md_F2 LINE L1 -126 6456 1978 1 792 237 33 0 0 chr6 27137894 27137924 -122379113 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 792 27808 107 57 32 chr6 27137924 27139472 -122377565 - L1Md_F2 LINE L1 -3906 1977 625 1 792 413 318 150 56 chr6 27139534 27140020 -122377017 + L1MC LINE L1 4339 4870 -1276 1 792 319 219 0 0 chr6 27140858 27140922 -122376115 + BGLII_B LTR ERVK 1 64 -377 1 792 684 262 0 0 chr6 27140922 27141105 -122375932 + MYSERV16_I-int LTR ERVK 2144 2326 0 1 792 2002 187 16 27 chr6 27141109 27141549 -122375488 + BGLII_B LTR ERVK 5 439 -2 1 792 1209 254 138 26 chr6 27141669 27141803 -122375234 - Lx9 LINE L1 -7 7637 7472 1 792 402 21 0 0 chr6 27141803 27141850 -122375187 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 792 1209 254 138 26 chr6 27141850 27142252 -122374785 - Lx9 LINE L1 -173 7471 7042 1 792 484 87 0 0 chr6 27143134 27143203 -122373834 - B1_Mm SINE Alu -1 146 78 1 792 290 297 93 41 chr6 27143203 27143308 -122373729 - Charlie7 DNA MER1_type -614 1998 1885 1 792 2723 79 45 8 chr6 27143308 27143690 -122373347 - MTA_Mm LTR MaLR 0 396 1 1 792 290 297 93 41 chr6 27143690 27143830 -122373207 - Charlie7 DNA MER1_type -728 1884 1740 1 792 25 31 0 0 chr6 27144030 27144062 -122372975 + AT_rich Low_complexity Low_complexity 1 32 0 1 792 411 316 60 58 chr6 27144189 27144550 -122372487 - MTEa LTR MaLR 0 379 6 1 792 245 265 14 29 chr6 27144528 27144598 -122372439 - ORR1E-int LTR MaLR -28 1552 1484 1 792 297 179 0 0 chr6 27144677 27144761 -122372276 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 792 306 67 0 0 chr6 27144748 27144793 -122372244 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 792 45 0 0 0 chr6 27144907 27144952 -122372085 + AT_rich Low_complexity Low_complexity 1 45 0 1 792 465 319 58 5 chr6 27144952 27145141 -122371896 - ORR1E-int LTR MaLR -122 1458 1260 1 792 1832 355 49 48 chr6 27145167 27146352 -122370685 - ORR1E-int LTR MaLR -327 1182 2 1 792 415 332 80 62 chr6 27146342 27146618 -122370419 - ORR1E LTR MaLR 0 359 79 1 792 314 335 135 30 chr6 27146816 27147053 -122369984 + L1M4 LINE L1 490 751 -5791 1 792 262 111 0 0 chr6 27147170 27147206 -122369831 + U2 snRNA snRNA 1 36 -152 1 792 301 284 0 47 chr6 27147649 27147778 -122369259 + Lx6 LINE L1 7313 7435 -25 1 792 216 0 0 0 chr6 27147794 27147818 -122369219 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 792 363 311 19 5 chr6 27147975 27148188 -122368849 + L1M4 LINE L1 5326 5541 -1103 1 792 37816 42 3 3 chr6 27148894 27155119 -122361918 - L1Md_T LINE L1 0 6585 265 1 792 277 333 37 9 chr6 27155360 27155469 -122361568 - B1F SINE Alu -24 125 14 1 792 233 254 13 53 chr6 27155951 27156026 -122361011 + Charlie10 DNA MER1_type 1029 1100 -1722 1 792 443 335 50 27 chr6 27156338 27156559 -122360478 + MLT2B3 LTR ERVL 1 226 -328 1 792 215 157 19 38 chr6 27156574 27156627 -122360410 + (TTG)n Simple_repeat Simple_repeat 3 54 0 1 792 1500 168 106 17 chr6 27156630 27156866 -122360171 - ORR1A4 LTR MaLR 0 329 78 1 792 414 0 0 0 chr6 27156866 27156912 -122360125 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 792 1500 168 106 17 chr6 27156912 27156977 -122360060 - ORR1A4 LTR MaLR -252 77 1 1 792 396 40 0 0 chr6 27156992 27157042 -122359995 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 1 792 227 318 76 0 chr6 27157042 27157108 -122359929 - ID4_ SINE ID -8 75 5 1 792 280 311 68 0 chr6 27157293 27157425 -122359612 + Ricksha_c DNA MuDR 766 906 -1142 1 792 489 332 85 18 chr6 27157893 27158221 -122358816 + L2 LINE L2 1929 2278 -1141 1 792 957 183 24 134 chr6 27159133 27159386 -122357651 + URR1B DNA MER1_type 1 225 0 1 792 610 285 0 27 chr6 27159765 27159913 -122357124 + B1_Mur3 SINE Alu 5 148 -1 1 792 1275 263 175 64 chr6 27159975 27160591 -122356446 - MTD-int LTR MaLR -392 706 54 2 792 180 0 0 0 chr6 27160591 27160611 -122356426 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 792 490 322 62 37 chr6 27160611 27160664 -122356373 - MTD-int LTR MaLR -1526 54 4 2 792 1391 273 60 21 chr6 27160665 27161047 -122355990 - MTD LTR MaLR 0 419 23 2 792 1501 88 28 0 chr6 27163820 27164036 -122353001 + L1_Mus1 LINE L1 6346 6567 0 2 792 267 333 109 29 chr6 27164127 27164337 -122352700 + MLT1H LTR MaLR 77 303 -246 2 792 188 98 15 62 chr6 27164502 27164567 -122352470 + A-rich Low_complexity Low_complexity 2 63 0 2 792 402 21 0 0 chr6 27164870 27164917 -122352120 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 792 231 264 0 0 chr6 27165094 27165147 -122351890 - MTEa LTR MaLR -13 366 314 2 792 476 299 43 29 chr6 27165155 27165293 -122351744 + B3A SINE B2 2 141 -57 2 792 648 48 0 0 chr6 27165297 27165381 -122351656 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 792 1661 146 92 102 chr6 27165419 27165899 -122351138 - IAPLTR2_Mm LTR ERVK 0 475 1 2 792 551 179 143 0 chr6 27165908 27166076 -122350961 + Lx9 LINE L1 7426 7617 -27 2 792 489 356 76 46 chr6 27166101 27166404 -122350633 - MTEa LTR MaLR -65 314 3 2 792 697 307 6 12 chr6 27166470 27166635 -122350402 + RSINE1 SINE B4 2 165 0 2 792 268 134 38 38 chr6 27167018 27167150 -122349887 + (TTTG)n Simple_repeat Simple_repeat 2 133 0 2 792 2105 167 13 15 chr6 27168612 27169001 -122348036 + Lx3A LINE L1 6587 6974 -7 2 792 270 0 0 0 chr6 27169314 27169344 -122347693 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 792 315 217 189 46 chr6 27169862 27170079 -122346958 - Lx7 LINE L1 -2 7694 7447 2 792 199 286 115 13 chr6 27170141 27170219 -122346818 + MIR3 SINE MIR 94 179 -29 2 792 297 0 0 0 chr6 27170510 27170543 -122346494 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 792 2201 310 86 57 chr6 27170607 27170857 -122346180 + Lx8 LINE L1 6231 6482 -991 2 792 1024 79 36 0 chr6 27170857 27170997 -122346040 - B1_Mm SINE Alu 0 147 3 2 792 2201 310 86 57 chr6 27170997 27171950 -122345087 + Lx8 LINE L1 6483 7470 -3 2 792 40162 14 1 1 chr6 27172478 27178643 -122338394 - L1Md_A LINE L1 0 6582 422 2 792 252 0 0 0 chr6 27180761 27180789 -122336248 + (A)n Simple_repeat Simple_repeat 1 28 0 2 792 578 406 18 25 chr6 27181260 27181545 -122335492 - B4A SINE B4 -8 284 2 2 792 234 0 0 0 chr6 27182057 27182083 -122334954 + (A)n Simple_repeat Simple_repeat 1 26 0 2 792 716 316 38 8 chr6 27182318 27182583 -122334454 - Lx9 LINE L1 -1014 6630 6358 2 792 1992 299 47 33 chr6 27182590 27183383 -122333654 + Lx9 LINE L1 6635 7438 -206 2 792 372 125 0 0 chr6 27183405 27183469 -122333568 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 792 434 61 15 0 chr6 27183508 27183574 -122333463 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 792 189 0 0 0 chr6 27183649 27183670 -122333367 + (GGAAA)n Simple_repeat Simple_repeat 4 24 0 2 792 27 49 0 0 chr6 27184916 27184957 -122332080 + AT_rich Low_complexity Low_complexity 1 41 0 2 792 235 350 0 72 chr6 27185061 27185172 -122331865 + MER3 DNA MER1_type 14 116 -93 2 792 22 0 0 0 chr6 27185264 27185286 -122331751 + AT_rich Low_complexity Low_complexity 1 22 0 2 792 1611 238 67 5 chr6 27185903 27186279 -122330758 - MTD LTR MaLR 0 419 21 2 792 312 349 59 6 chr6 27186525 27186695 -122330342 + B3A SINE B2 1 179 -19 2 792 315 0 0 0 chr6 27186703 27186738 -122330299 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 792 31 68 0 0 chr6 27186864 27186923 -122330114 + AT_rich Low_complexity Low_complexity 1 59 0 2 792 652 337 101 37 chr6 27187332 27188168 -122328869 - L1MD2 LINE L1 -18 6341 5459 2 792 1119 255 84 17 chr6 27188168 27188515 -122328522 - ORR1D2 LTR MaLR 0 370 1 2 792 652 337 101 37 chr6 27188515 27188605 -122328432 - L1MD2 LINE L1 -901 5458 5355 2 792 249 341 117 22 chr6 27188666 27188846 -122328191 + Lx8 LINE L1 6781 6977 -496 2 792 289 244 86 17 chr6 27189060 27189177 -122327860 - L1MD2 LINE L1 -876 5270 5146 2 792 290 275 56 56 chr6 27189185 27189293 -122327744 - MTEa LTR MaLR -9 370 263 2 792 226 330 11 0 chr6 27189618 27189712 -122327325 - L1M2 LINE L1 -438 5865 5771 2 792 263 279 0 0 chr6 27189737 27189805 -122327232 - L1M2 LINE L1 -564 5727 5660 2 792 512 327 76 59 chr6 27191578 27191919 -122325118 - MTC-int LTR MaLR -340 918 572 2 792 1240 33 0 0 chr6 27191798 27191950 -122325087 + B2_Mm2 SINE B2 7 158 -37 2 792 459 0 0 0 chr6 27191952 27192003 -122325034 + (TAA)n Simple_repeat Simple_repeat 1 51 0 2 792 2180 244 70 47 chr6 27192015 27192190 -122324847 - MTD-int LTR MaLR -558 700 533 2 792 585 0 0 0 chr6 27192190 27192255 -122324782 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 2 792 2180 244 70 47 chr6 27192255 27192709 -122324328 - MTD-int LTR MaLR -726 532 52 2 792 542 0 44 0 chr6 27192709 27192777 -122324260 + (TAAAA)n Simple_repeat Simple_repeat 2 72 0 2 792 2180 244 70 47 chr6 27192777 27192830 -122324207 - MTD-int LTR MaLR -1207 51 2 2 792 715 300 121 67 chr6 27192830 27193176 -122323861 - MTD LTR MaLR 0 419 55 2 792 228 250 0 0 chr6 27193334 27193398 -122323639 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 792 22 0 0 0 chr6 27195396 27195418 -122321619 + AT_rich Low_complexity Low_complexity 1 22 0 2 792 365 279 19 19 chr6 27195785 27195891 -122321146 + MLT1A LTR MaLR 269 374 0 2 792 257 68 23 0 chr6 27196246 27196290 -122320747 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 2 792 1033 77 0 20 chr6 27196404 27196543 -122320494 + B1_Mus2 SINE Alu 1 138 -9 2 792 231 61 0 0 chr6 27196543 27196576 -122320461 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 792 3701 119 52 11 chr6 27196741 27197359 -122319678 - Lx LINE L1 0 6654 6012 2 792 752 323 52 31 chr6 27197882 27198208 -122318829 - Lx8 LINE L1 -94 7379 7047 2 792 350 186 29 0 chr6 27199388 27199458 -122317579 + Lx9 LINE L1 7396 7467 -177 2 792 2502 208 176 24 chr6 27199458 27200212 -122316825 + RMER13B LTR ERVK 1 869 -39 2 792 254 179 18 0 chr6 27200265 27200321 -122316716 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 792 525 234 12 6 chr6 27200326 27200489 -122316548 + Lx9 LINE L1 7478 7641 -3 2 792 262 258 82 52 chr6 27201124 27201259 -122315778 + MER3 DNA MER1_type 46 184 -25 2 792 501 17 0 0 chr6 27201929 27201987 -122315050 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 792 270 264 0 40 chr6 27201996 27202071 -122314966 + G-rich Low_complexity Low_complexity 3 74 0 2 792 23 0 0 0 chr6 27202111 27202134 -122314903 + AT_rich Low_complexity Low_complexity 1 23 0 2 792 6425 163 54 16 chr6 27202134 27203343 -122313694 - Lx2 LINE L1 0 6997 5743 2 792 272 273 192 0 chr6 27203402 27203501 -122313536 - MER5A DNA MER1_type -41 148 31 2 792 807 48 0 0 chr6 27203597 27203701 -122313336 + (TG)n Simple_repeat Simple_repeat 2 105 0 2 792 357 331 32 32 chr6 27204111 27204236 -122312801 + RSINE1 SINE B4 6 130 -35 2 792 288 0 0 0 chr6 27204249 27204281 -122312756 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 2 792 319 331 70 16 chr6 27204756 27204885 -122312152 + AmnSINE1 SINE SINE 264 399 -176 2 792 262 281 77 89 chr6 27204926 27205094 -122311943 - MIR SINE MIR -2 260 95 2 792 1025 134 0 6 chr6 27205461 27205634 -122311403 + (GAA)n Simple_repeat Simple_repeat 2 173 0 2 792 387 0 0 0 chr6 27205696 27205739 -122311298 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 792 241 216 98 0 chr6 27205811 27205862 -122311175 - ID4 SINE ID -26 57 2 2 792 536 162 0 83 chr6 27206224 27206332 -122310705 + B1_Mus2 SINE Alu 26 124 -23 2 792 21 0 0 0 chr6 27206374 27206395 -122310642 + AT_rich Low_complexity Low_complexity 1 21 0 2 792 238 181 10 21 chr6 27207005 27207101 -122309936 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 2 792 195 42 0 0 chr6 27207619 27207643 -122309394 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2 792 519 183 0 0 chr6 27207645 27207727 -122309310 - B1_Mus2 SINE Alu -6 141 60 2 792 288 0 0 0 chr6 27208289 27208321 -122308716 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 792 2572 69 9 3 chr6 27208780 27209127 -122307910 + L1_Mus3 LINE L1 6289 6637 -1 2 792 654 250 21 0 chr6 27209172 27209312 -122307725 - B1_Mur2 SINE Alu -1 148 6 2 792 25 51 0 0 chr6 27209548 27209587 -122307450 + AT_rich Low_complexity Low_complexity 1 39 0 2 792 1616 311 83 19 chr6 27209728 27209851 -122307186 - Lx8 LINE L1 -2 7471 7330 2 792 1008 144 0 0 chr6 27209851 27210024 -122307013 + (TC)n Simple_repeat Simple_repeat 2 174 0 2 792 1616 311 83 19 chr6 27210024 27210651 -122306386 - Lx8 LINE L1 -144 7329 6674 2 792 495 0 0 0 chr6 27211616 27211671 -122305366 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 792 5474 110 89 30 chr6 27211806 27212328 -122304709 + Lx LINE L1 5697 6270 -384 2 792 5749 108 26 33 chr6 27212328 27213236 -122303801 - RLTR13D6 LTR ERVK 0 902 1 2 792 5474 107 90 30 chr6 27213236 27213628 -122303409 + Lx LINE L1 6271 6652 -2 2 792 233 67 66 16 chr6 27213664 27213725 -122303312 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 2 792 192 158 0 0 chr6 27214607 27214645 -122302392 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2 792 2034 202 49 22 chr6 27214802 27215248 -122301789 - RMER20A LTR ERVK -48 468 11 2 792 195 42 0 0 chr6 27215587 27215611 -122301426 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2 792 523 367 89 19 chr6 27216080 27216497 -122300540 + L2 LINE L2 2470 2915 -504 2 792 938 75 22 0 chr6 27216610 27216744 -122300293 + L1_Mur1 LINE L1 2474 2610 -3276 2 792 4242 141 18 18 chr6 27217444 27218180 -122298857 - Lx4B LINE L1 -559 5318 4583 2 792 6660 187 35 11 chr6 27218181 27219880 -122297157 + Lx4B LINE L1 5312 7056 -2 2 792 2833 103 10 2 chr6 27220004 27220421 -122296616 - L1_Mus3 LINE L1 0 6638 6219 2 792 243 114 0 0 chr6 27220694 27220738 -122296299 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 2 792 263 231 29 95 chr6 27221089 27221194 -122295843 + LTR37B LTR ERV1 318 415 -53 2 792 495 211 68 34 chr6 27221335 27221512 -122295525 + Lx9 LINE L1 7455 7637 -7 2 792 2721 135 24 5 chr6 27221558 27221983 -122295054 + RLTR10C LTR ERVK 1 433 -3 2 792 21 57 0 0 chr6 27225139 27225174 -122291863 + AT_rich Low_complexity Low_complexity 1 35 0 2 792 29 0 0 0 chr6 27225821 27225850 -122291187 + AT_rich Low_complexity Low_complexity 1 29 0 2 792 3708 74 2 6 chr6 27225899 27226399 -122290638 - L1Md_F2 LINE L1 -8 6574 6077 2 792 24 91 0 0 chr6 27226501 27226567 -122290470 + AT_rich Low_complexity Low_complexity 1 66 0 3 792 268 209 5 20 chr6 27227192 27227275 -122289762 - MT2A LTR ERVL -2 565 484 3 792 22 35 0 0 chr6 27227532 27227561 -122289476 + AT_rich Low_complexity Low_complexity 1 29 0 3 792 193 238 62 31 chr6 27227774 27227839 -122289198 + L4 LINE RTE 529 595 -1434 3 792 405 0 0 0 chr6 27227859 27227904 -122289133 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 792 438 103 0 0 chr6 27227985 27228063 -122288974 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 792 523 262 38 27 chr6 27228370 27228554 -122288483 + Lx9 LINE L1 7246 7431 -213 3 792 1148 61 0 7 chr6 27228554 27228703 -122288334 + B1_Mus1 SINE Alu 1 148 0 3 792 2125 228 48 8 chr6 27228752 27229252 -122287785 - Lx7 LINE L1 -469 7227 6708 3 792 203 254 0 0 chr6 27229252 27229315 -122287722 + (TTTA)n Simple_repeat Simple_repeat 4 66 0 3 792 616 309 51 99 chr6 27229329 27229377 -122287660 + Lx6 LINE L1 7101 7158 -302 3 792 4474 114 46 13 chr6 27229377 27230088 -122286949 - Lx LINE L1 -1 6653 5919 3 792 616 309 51 99 chr6 27230088 27230391 -122286646 + Lx6 LINE L1 7159 7434 -26 3 792 609 295 0 31 chr6 27230912 27231108 -122285929 + B3A SINE B2 1 190 -8 3 792 24 0 0 0 chr6 27231131 27231155 -122285882 + AT_rich Low_complexity Low_complexity 1 24 0 3 792 3170 151 35 7 chr6 27231374 27231943 -122285094 - L1_Mur3 LINE L1 -51 5829 5245 3 792 5071 90 7 5 chr6 27231926 27231946 -122285091 - MusHAL1 LINE L1 -458 2254 2236 3 792 1816 187 14 20 chr6 27231946 27232300 -122284737 - Lx LINE L1 0 6654 6303 3 792 5071 90 7 5 chr6 27232300 27233030 -122284007 - MusHAL1 LINE L1 -477 2235 1503 3 792 180 0 0 0 chr6 27233305 27233325 -122283712 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 792 25 31 0 0 chr6 27233834 27233866 -122283171 + AT_rich Low_complexity Low_complexity 1 32 0 3 792 414 0 0 0 chr6 27233880 27233926 -122283111 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 792 1758 187 69 9 chr6 27234262 27234608 -122282429 + ORR1B2 LTR MaLR 1 367 0 3 792 266 354 42 0 chr6 27234688 27234784 -122282253 - PB1D10 SINE Alu 0 117 18 3 792 1874 116 10 7 chr6 27236465 27236768 -122280269 - L1_Mus3 LINE L1 -6 6632 6329 3 792 710 305 36 10 chr6 27236963 27237155 -122279882 + B3 SINE B2 20 216 0 3 792 243 255 96 19 chr6 27237324 27237428 -122279609 + Lx8 LINE L1 7358 7469 -4 3 792 394 201 24 36 chr6 27237701 27237815 -122279222 + MTE2a LTR MaLR 1 111 -308 3 792 459 0 0 0 chr6 27237860 27237911 -122279126 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 792 351 44 0 0 chr6 27237911 27237955 -122279082 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 792 528 16 0 0 chr6 27239127 27239188 -122277849 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 792 28 48 0 0 chr6 27239195 27239237 -122277800 + AT_rich Low_complexity Low_complexity 1 42 0 3 792 279 304 11 32 chr6 27239954 27240049 -122276988 + PB1D10 SINE Alu 1 93 -24 3 792 3269 160 31 52 chr6 27240350 27241115 -122275922 + Lx7 LINE L1 2385 3133 -2747 3 792 287 49 0 24 chr6 27241119 27241161 -122275876 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 3 792 6117 183 166 36 chr6 27241161 27242533 -122274504 + Lx7 LINE L1 4039 5623 -257 3 792 1970 174 60 17 chr6 27242533 27242936 -122274101 - MTC LTR MaLR -1 420 1 3 792 6117 204 129 39 chr6 27242936 27243348 -122273689 + Lx7 LINE L1 5624 6053 -1643 3 792 5980 225 72 62 chr6 27243794 27245432 -122271605 + Lx7 LINE L1 6043 7696 0 3 792 380 288 38 82 chr6 27245813 27245972 -122271065 + RMER10B LTR ERVL 247 398 0 3 792 1443 258 132 16 chr6 27247910 27248280 -122268757 - Lx5 LINE L1 -4 7046 6634 3 792 233 111 0 36 chr6 27248354 27248410 -122268627 + (GTTTG)n Simple_repeat Simple_repeat 1 54 0 3 792 288 0 0 0 chr6 27248410 27248442 -122268595 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 792 1995 262 41 22 chr6 27248442 27248950 -122268087 - Lx5 LINE L1 -416 6634 6117 3 792 390 42 0 0 chr6 27249463 27249511 -122267526 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 792 300 342 33 20 chr6 27252054 27252206 -122264831 + MIRc SINE MIR 64 217 -51 3 792 253 338 62 6 chr6 27252856 27253017 -122264020 + L1MA6 LINE L1 5770 5939 -361 3 792 345 279 31 47 chr6 27253020 27253148 -122263889 + RSINE1 SINE B4 4 129 -36 3 792 201 408 24 6 chr6 27253813 27253983 -122263054 + L2 LINE L2 1637 1809 -1610 3 792 245 343 73 18 chr6 27254121 27254231 -122262806 + RMER12 LTR ERVK 735 850 -472 3 792 219 154 58 0 chr6 27254232 27254284 -122262753 + (CATA)n Simple_repeat Simple_repeat 2 56 0 3 792 655 267 125 5 chr6 27254473 27254741 -122262296 + L1M3 LINE L1 3752 4062 -2084 3 792 686 175 0 7 chr6 27254923 27255067 -122261970 + CT-rich Low_complexity Low_complexity 4 146 0 3 792 183 100 0 0 chr6 27255867 27255897 -122261140 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 792 207 0 0 0 chr6 27256171 27256194 -122260843 + (T)n Simple_repeat Simple_repeat 1 23 0 3 792 23 33 0 0 chr6 27256261 27256291 -122260746 + AT_rich Low_complexity Low_complexity 1 30 0 3 792 575 263 115 31 chr6 27256348 27256540 -122260497 - B3 SINE B2 -8 208 1 3 792 664 233 73 11 chr6 27256976 27257154 -122259883 - Lx6 LINE L1 -26 7434 7246 3 792 1581 133 60 17 chr6 27257198 27257496 -122259541 + Lx3B LINE L1 6663 6973 0 3 792 2056 278 58 44 chr6 27257709 27258553 -122258484 - Charlie1a DNA MER1_type -135 1320 465 3 792 1478 135 51 29 chr6 27258632 27258907 -122258130 - Lx LINE L1 -28 6626 6346 3 792 376 309 0 0 chr6 27259044 27259128 -122257909 + B1F SINE Alu 2 85 -64 3 792 687 268 167 11 chr6 27259763 27260038 -122256999 + MLT2B2 LTR ERVL 15 332 -183 3 792 183 237 48 63 chr6 27260055 27260118 -122256919 + L2c LINE L2 3324 3385 -2 3 792 186 103 0 0 chr6 27260486 27260515 -122256522 + (A)n Simple_repeat Simple_repeat 1 29 0 3 792 279 0 0 0 chr6 27260708 27260739 -122256298 + (T)n Simple_repeat Simple_repeat 1 31 0 3 792 274 333 33 66 chr6 27261994 27262145 -122254892 - MIRb SINE MIR 0 268 123 3 792 395 289 77 0 chr6 27262523 27262627 -122254410 - RSINE1 SINE B4 -33 132 21 3 793 183 287 111 33 chr6 27263166 27263256 -122253781 + MIRc SINE MIR 70 166 -102 3 793 227 402 10 55 chr6 27263270 27263470 -122253567 + LTR79 LTR ERVL 53 243 -284 3 793 712 224 7 39 chr6 27263918 27264071 -122252966 + B1_Mur2 SINE Alu 1 148 -1 3 793 35 41 0 0 chr6 27264259 27264308 -122252729 + AT_rich Low_complexity Low_complexity 1 49 0 3 793 21 0 0 0 chr6 27264695 27264716 -122252321 + AT_rich Low_complexity Low_complexity 1 21 0 3 793 1250 242 90 27 chr6 27265432 27265797 -122251240 - MTD LTR MaLR -14 405 18 3 793 346 36 36 18 chr6 27265797 27265853 -122251184 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 3 793 298 313 93 6 chr6 27265904 27266112 -122250925 - MER106B DNA MER1_type -1 1058 904 3 793 1042 89 0 0 chr6 27266571 27266706 -122250331 + B1_Mus1 SINE Alu 2 136 -12 3 793 399 21 0 0 chr6 27266761 27266809 -122250228 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 793 471 101 0 0 chr6 27266810 27266889 -122250148 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 793 548 14 14 0 chr6 27266889 27266957 -122250080 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 793 206 200 0 0 chr6 27268357 27268392 -122248645 + C-rich Low_complexity Low_complexity 3 37 0 3 793 384 217 0 0 chr6 27269474 27269566 -122247471 + GA-rich Low_complexity Low_complexity 6 97 0 3 793 297 75 0 0 chr6 27269831 27269871 -122247166 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 793 24 32 0 0 chr6 27270824 27270855 -122246182 + AT_rich Low_complexity Low_complexity 1 31 0 3 793 225 254 14 43 chr6 27271284 27271354 -122245683 + ID4 SINE ID 14 81 -2 3 793 229 353 90 26 chr6 27272804 27272993 -122244044 + Tigger10 DNA Tigger 345 545 -1298 3 793 333 47 0 0 chr6 27273815 27273858 -122243179 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 793 2118 66 3 3 chr6 27274227 27274515 -122242522 - L1_Mus4 LINE L1 -3 6633 6346 3 793 315 0 0 0 chr6 27275143 27275178 -122241859 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 793 23 68 0 0 chr6 27275239 27275283 -122241754 + AT_rich Low_complexity Low_complexity 1 44 0 3 793 24 0 0 0 chr6 27276185 27276209 -122240828 + AT_rich Low_complexity Low_complexity 1 24 0 3 793 248 245 189 0 chr6 27276318 27276424 -122240613 - L1MA9 LINE L1 -187 6125 6000 3 793 458 250 66 61 chr6 27276424 27276620 -122240417 + CYRA11_Mm Unknown Y-chromosome 149 345 -272 3 793 1224 154 34 0 chr6 27276455 27276663 -122240374 - URR1A DNA MER1_type -5 221 7 3 793 301 301 113 14 chr6 27276670 27276882 -122240155 - L1MA9 LINE L1 -323 5968 5736 3 793 317 270 60 0 chr6 27277082 27277182 -122239855 - PB1D9 SINE Alu -1 119 14 3 793 195 69 0 0 chr6 27277622 27277651 -122239386 + (TTTTTG)n Simple_repeat Simple_repeat 5 33 0 3 793 268 352 120 11 chr6 27278234 27278418 -122238619 - MLT1A1 LTR MaLR -202 206 3 3 793 180 143 0 0 chr6 27279068 27279110 -122237927 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 3 793 268 320 118 14 chr6 27280590 27280696 -122236341 - B4 SINE B4 -127 165 60 3 793 504 263 15 31 chr6 27280781 27281021 -122236016 + L1VL1 LINE L1 91 398 -6024 3 793 418 257 55 14 chr6 27281072 27281218 -122235819 + L1_Mus1 LINE L1 664 815 -5801 3 793 1011 194 15 0 chr6 27281215 27281421 -122235616 + L1_Mus1 LINE L1 725 933 -5683 3 793 25708 107 14 11 chr6 27281427 27286107 -122230930 + L1_Mus1 LINE L1 1877 6566 -1 3 793 1717 222 57 8 chr6 27286871 27287303 -122229734 + Lx2B LINE L1 6474 7025 -33 3 793 320 0 25 0 chr6 27287314 27287354 -122229683 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 3 793 1442 165 4 4 chr6 27287592 27287835 -122229202 - Lx5 LINE L1 -473 6577 6335 3 793 1404 154 39 105 chr6 27287832 27288165 -122228872 + L1_Mur2 LINE L1 4629 4939 -938 3 793 3106 174 79 50 chr6 27288165 27288865 -122228172 + RMER6D LTR ERVK 1 720 0 3 793 1551 221 50 85 chr6 27289130 27289590 -122227447 + RLTR20B3 LTR ERVK 3 446 -131 4 793 1215 38 0 0 chr6 27289590 27289747 -122227290 + (TG)n Simple_repeat Simple_repeat 2 158 0 4 793 1496 231 101 94 chr6 27289747 27289840 -122227197 + RLTR20B3 LTR ERVK 430 559 -1 4 793 311 161 16 0 chr6 27291114 27291176 -122225861 - MER53 DNA hAT -130 63 1 4 793 2430 93 11 8 chr6 27291260 27291617 -122225420 + L1_Mus2 LINE L1 6209 6566 0 4 793 2040 44 0 8 chr6 27292221 27292475 -122224562 + L1Md_F2 LINE L1 6316 6567 -15 4 793 245 224 8 93 chr6 27292498 27292616 -122224421 + Lx9 LINE L1 7530 7637 -7 4 793 4586 97 42 51 chr6 27292662 27293401 -122223636 + Lx LINE L1 5917 6648 -6 4 793 1749 156 18 78 chr6 27293915 27294387 -122222650 + RMER17C LTR ERVK 16 439 -519 4 793 180 307 44 22 chr6 27294468 27294558 -122222479 - MIR SINE MIR -64 198 107 4 793 272 70 0 23 chr6 27294819 27294863 -122222174 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 793 255 125 0 0 chr6 27295604 27295644 -122221393 + (A)n Simple_repeat Simple_repeat 1 40 0 4 793 181 325 25 25 chr6 27295963 27296042 -122220995 - MIRm SINE MIR -118 158 80 4 793 1053 97 7 0 chr6 27296692 27296836 -122220201 - B1_Mm SINE Alu -2 145 1 4 793 970 251 119 25 chr6 27297245 27297572 -122219465 + ORR1D1 LTR MaLR 17 374 0 4 793 1051 81 94 0 chr6 27298012 27298172 -122218865 + L1_Mus2 LINE L1 6392 6566 0 4 793 219 174 22 0 chr6 27298178 27298224 -122218813 + A-rich Low_complexity Low_complexity 2 48 0 4 793 420 252 196 11 chr6 27299196 27299291 -122217746 + Lx9 LINE L1 7307 7410 -234 4 793 2338 111 6 0 chr6 27299291 27299616 -122217421 - ORR1A2 LTR MaLR 0 327 1 4 793 420 252 196 11 chr6 27299616 27299805 -122217232 + Lx9 LINE L1 7411 7643 -1 4 793 21 0 0 0 chr6 27300014 27300035 -122217002 + AT_rich Low_complexity Low_complexity 1 21 0 4 793 328 293 82 16 chr6 27300197 27300381 -122216656 - Lx6 LINE L1 -10 7450 7255 4 793 1044 265 56 17 chr6 27300367 27300397 -122216640 - Lx7 LINE L1 -230 7466 7431 4 793 516 16 0 0 chr6 27300397 27300458 -122216579 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 793 1044 265 56 17 chr6 27300458 27300784 -122216253 - Lx7 LINE L1 -266 7430 7096 4 793 559 271 34 8 chr6 27300817 27300936 -122216101 + RSINE1 SINE B4 10 131 -34 4 793 271 289 53 0 chr6 27301193 27301269 -122215768 + ID4 SINE ID 2 81 -2 4 793 587 254 34 27 chr6 27302616 27302762 -122214275 - B1_Mur1 SINE Alu 0 149 3 4 793 21 0 0 0 chr6 27302827 27302848 -122214189 + AT_rich Low_complexity Low_complexity 1 21 0 4 793 2032 153 0 0 chr6 27303439 27303765 -122213272 + ORR1A3 LTR MaLR 1 326 0 4 793 318 115 0 0 chr6 27305329 27305390 -122211647 + (A)n Simple_repeat Simple_repeat 1 61 0 4 793 471 113 0 0 chr6 27306632 27306703 -122210334 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 4 793 1086 88 0 26 chr6 27306704 27306856 -122210181 - B1_Mus1 SINE Alu 0 148 1 4 793 521 250 101 104 chr6 27306922 27307190 -122209847 - RLTR21 LTR ERVK 0 1572 1306 4 793 2520 239 71 49 chr6 27307254 27307931 -122209106 - RMER12B LTR ERVK -712 692 1 4 793 2419 175 2 35 chr6 27308423 27308850 -122208187 + MTC LTR MaLR 2 414 -7 4 793 2814 88 36 10 chr6 27308850 27309264 -122207773 - L1_Mus4 LINE L1 -172 6464 6040 4 793 640 294 47 66 chr6 27310835 27311155 -122205882 - Lx8 LINE L1 -3 7470 7157 4 793 426 69 0 0 chr6 27312906 27312964 -122204073 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 793 23 0 0 0 chr6 27313023 27313046 -122203991 + AT_rich Low_complexity Low_complexity 1 23 0 4 793 456 346 67 31 chr6 27315107 27315301 -122201736 + MLT1F1 LTR MaLR 316 516 -53 4 793 235 305 146 10 chr6 27316533 27316629 -122200408 + B1F SINE Alu 2 110 -39 4 793 198 0 0 0 chr6 27316645 27316667 -122200370 + (A)n Simple_repeat Simple_repeat 1 22 0 4 793 665 360 7 4 chr6 27316671 27316950 -122200087 + Lx8 LINE L1 6565 6844 -629 4 793 1099 283 110 18 chr6 27316935 27317446 -122199591 + L1_Rod LINE L1 3885 4442 -1405 4 793 595 264 159 0 chr6 27317529 27317711 -122199326 + B3 SINE B2 6 216 0 4 793 704 253 128 12 chr6 27317728 27318064 -122198973 + L1M4 LINE L1 4350 4724 -1422 4 793 24 0 0 0 chr6 27318064 27318088 -122198949 + AT_rich Low_complexity Low_complexity 1 24 0 4 793 760 316 5 0 chr6 27318092 27318279 -122198758 - B3 SINE B2 -27 189 2 4 793 238 301 90 0 chr6 27318282 27318415 -122198622 + L1M4 LINE L1 4729 4873 -1267 4 793 24 67 0 0 chr6 27319934 27319979 -122197058 + AT_rich Low_complexity Low_complexity 1 45 0 4 793 1795 113 125 6 chr6 27320074 27320385 -122196652 + Lx LINE L1 6302 6649 -5 4 793 204 148 16 47 chr6 27320409 27320473 -122196564 + A-rich Low_complexity Low_complexity 4 65 0 4 793 438 20 0 0 chr6 27320490 27320541 -122196496 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 793 792 269 65 5 chr6 27320544 27320761 -122196276 - Lx6 LINE L1 -183 7277 7048 4 793 189 107 0 0 chr6 27320992 27321020 -122196017 + (A)n Simple_repeat Simple_repeat 1 28 0 4 793 362 283 117 62 chr6 27322119 27322281 -122194756 + B3A SINE B2 12 182 -16 4 793 420 143 0 0 chr6 27322282 27322352 -122194685 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 793 510 17 0 0 chr6 27322352 27322411 -122194626 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 793 196 200 44 0 chr6 27322553 27322598 -122194439 - L2a LINE L2 -19 3407 3361 4 793 4806 118 1 7 chr6 27323508 27324233 -122192804 - L1_Mus4 LINE L1 -6 6630 5910 4 793 363 183 0 0 chr6 27324708 27324790 -122192247 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 793 27 0 0 0 chr6 27326270 27326297 -122190740 + AT_rich Low_complexity Low_complexity 1 27 0 4 793 21 0 0 0 chr6 27326590 27326611 -122190426 + AT_rich Low_complexity Low_complexity 1 21 0 4 793 971 267 56 61 chr6 27327440 27327978 -122189059 - L1_Rod LINE L1 -2297 3550 3016 4 793 1983 107 7 0 chr6 27327984 27328273 -122188764 - L1_Mus3 LINE L1 -5 6633 6343 4 793 2859 167 53 7 chr6 27328309 27328870 -122188167 + ORR1A3-int LTR MaLR 1 587 -1376 4 793 552 225 21 110 chr6 27328840 27328985 -122188052 + MT2B LTR ERVL 156 287 -314 4 793 884 166 112 6 chr6 27328990 27329160 -122187877 - ORR1A2 LTR MaLR -139 188 1 4 793 817 292 56 6 chr6 27329175 27329519 -122187518 + Lx9 LINE L1 5537 5927 -1717 4 793 409 36 0 0 chr6 27329724 27329780 -122187257 + L1_Mus1 LINE L1 6512 6567 0 4 793 324 303 74 112 chr6 27329828 27330046 -122186991 + Lx9 LINE L1 7225 7469 -175 4 793 564 15 0 0 chr6 27330046 27330111 -122186926 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 793 324 303 74 112 chr6 27330111 27330312 -122186725 + Lx9 LINE L1 7470 7628 -16 4 793 23 54 0 0 chr6 27330312 27330349 -122186688 + AT_rich Low_complexity Low_complexity 1 37 0 4 793 320 273 59 29 chr6 27330875 27330977 -122186060 + PB1D7 SINE Alu 14 118 -2 4 793 257 317 57 9 chr6 27332281 27332386 -122184651 - PB1D7 SINE Alu -9 111 2 4 793 37 76 0 0 chr6 27332552 27332631 -122184406 + AT_rich Low_complexity Low_complexity 1 79 0 4 793 3719 67 0 16 chr6 27332794 27333279 -122183758 - L1_Mus1 LINE L1 -1 6566 6090 4 793 21 36 0 0 chr6 27333783 27333811 -122183226 + AT_rich Low_complexity Low_complexity 1 28 0 4 793 23 54 0 0 chr6 27336040 27336077 -122180960 + AT_rich Low_complexity Low_complexity 1 37 0 4 793 27 73 0 0 chr6 27336480 27336535 -122180502 + AT_rich Low_complexity Low_complexity 1 55 0 4 793 460 329 13 26 chr6 27336617 27336773 -122180264 - RSINE1 SINE B4 0 165 12 4 793 940 313 31 96 chr6 27337105 27337490 -122179547 + MTE2b LTR MaLR 1 360 -19 4 793 295 252 26 139 chr6 27337513 27337628 -122179409 + MTE2b-int LTR MaLR 2 106 -1474 4 793 504 0 0 0 chr6 27338582 27338638 -122178399 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 4 793 333 118 0 0 chr6 27339371 27339422 -122177615 + (GAAAA)n Simple_repeat Simple_repeat 4 54 0 4 793 368 178 9 0 chr6 27339516 27339623 -122177414 + (TG)n Simple_repeat Simple_repeat 2 109 0 4 793 239 106 43 0 chr6 27339993 27340040 -122176997 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 4 793 868 308 94 58 chr6 27340598 27342264 -122174773 + L1MA4 LINE L1 4151 5906 -394 4 793 587 108 21 0 chr6 27342308 27342401 -122174636 - L1_Mm LINE L1 -504 5379 5285 4 793 4003 95 18 0 chr6 27342386 27342957 -122174080 - L1_Mm LINE L1 -767 5116 4536 4 793 25 31 0 0 chr6 27342957 27342989 -122174048 + AT_rich Low_complexity Low_complexity 1 32 0 4 793 26 0 0 0 chr6 27343034 27343060 -122173977 + AT_rich Low_complexity Low_complexity 1 26 0 4 793 382 85 43 65 chr6 27343252 27343317 -122173720 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 4 793 1083 41 20 33 chr6 27343317 27343467 -122173570 - B1_Mus1 SINE Alu 0 148 1 4 793 382 85 43 65 chr6 27343467 27343540 -122173497 + (TTTG)n Simple_repeat Simple_repeat 1 66 0 4 793 513 0 0 0 chr6 27343541 27343598 -122173439 + (GTTTG)n Simple_repeat Simple_repeat 2 58 0 4 793 1017 97 32 0 chr6 27343598 27343753 -122173284 - L1_Mus2 LINE L1 -7 6559 6400 4 793 28 0 0 0 chr6 27344086 27344114 -122172923 + AT_rich Low_complexity Low_complexity 1 28 0 4 793 1701 190 81 16 chr6 27345390 27345760 -122171277 + ORR1B1 LTR MaLR 1 394 0 4 793 31 26 0 0 chr6 27345810 27345848 -122171189 + AT_rich Low_complexity Low_complexity 1 38 0 4 793 908 294 46 44 chr6 27347042 27347396 -122169641 + Lx8 LINE L1 6348 6699 -945 4 793 2660 189 36 78 chr6 27347439 27348132 -122168905 + RMER6C LTR ERVK 1 664 -26 4 793 680 283 152 41 chr6 27348160 27348554 -122168483 + Lx8 LINE L1 6768 7205 -268 4 793 23 33 0 0 chr6 27348935 27348965 -122168072 + AT_rich Low_complexity Low_complexity 1 30 0 4 793 3612 60 0 0 chr6 27349057 27349510 -122167527 + L1Md_F2 LINE L1 6130 6582 0 4 793 583 299 96 18 chr6 27349717 27349778 -122167259 + ID SINE ID 5 78 -146 4 793 332 364 44 29 chr6 27349778 27349914 -122167123 + B1F2 SINE Alu 1 138 -11 4 793 1324 213 38 47 chr6 27350271 27350611 -122166426 - Lx7 LINE L1 -1 7695 7359 5 793 211 191 0 31 chr6 27350622 27350687 -122166350 + GA-rich Low_complexity Low_complexity 4 66 0 5 793 1164 86 0 0 chr6 27350692 27350854 -122166183 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 5 793 2310 254 33 12 chr6 27350938 27351539 -122165498 - Lx7 LINE L1 -329 7367 6754 5 793 1389 155 61 4 chr6 27351561 27351840 -122165197 - Lx7 LINE L1 -1 6996 6702 5 793 3956 229 55 13 chr6 27351840 27353429 -122163608 - Lx7 LINE L1 -895 6801 5180 5 793 13075 132 50 12 chr6 27353423 27355792 -122161245 + L1_Mur2 LINE L1 2517 4976 -901 5 793 321 26 0 0 chr6 27357079 27357117 -122159920 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 793 369 360 103 43 chr6 27357185 27357438 -122159599 - B4 SINE B4 -19 273 6 5 793 789 19 28 0 chr6 27358238 27358345 -122158692 + (TG)n Simple_repeat Simple_repeat 1 110 0 5 793 603 92 0 0 chr6 27358789 27358876 -122158161 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 793 11089 14 0 0 chr6 27359050 27361067 -122155970 - L1Md_T LINE L1 0 6582 4596 5 793 25 0 0 0 chr6 27361773 27361798 -122155239 + AT_rich Low_complexity Low_complexity 1 25 0 5 793 464 222 0 9 chr6 27361853 27361962 -122155075 + L1_Mur1 LINE L1 3795 3902 -1984 5 793 242 347 58 0 chr6 27362029 27362142 -122154895 - B1F SINE Alu -23 126 5 5 793 6836 30 1 0 chr6 27363487 27364289 -122152748 + L1Md_F2 LINE L1 5780 6582 0 5 793 244 393 80 0 chr6 27365934 27366084 -122150953 + RMER15 LTR ERVL 400 561 -14 5 793 12400 174 133 20 chr6 27366803 27372104 -122144933 + L1_Mus2 LINE L1 613 6654 0 5 793 9192 104 14 44 chr6 27372105 27373021 -122144016 + Lx3_Mus LINE L1 4735 5613 -273 5 793 4310 61 41 17 chr6 27373021 27373603 -122143434 - L1_Mus1 LINE L1 -1 6566 5971 5 793 9192 93 48 10 chr6 27373603 27374941 -122142096 + Lx3_Mus LINE L1 5611 7001 -8 5 793 185 318 0 0 chr6 27376633 27376677 -122140360 + L2a LINE L2 3288 3331 -95 5 793 269 324 28 28 chr6 27376861 27377004 -122140033 + L1MA7 LINE L1 6111 6253 -38 5 793 195 42 0 0 chr6 27377166 27377190 -122139847 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 793 202 347 42 10 chr6 27377504 27377600 -122139437 - MIR SINE MIR -57 205 107 5 793 21 36 0 0 chr6 27380637 27380665 -122136372 + AT_rich Low_complexity Low_complexity 1 28 0 5 793 267 31 0 0 chr6 27381003 27381035 -122136002 + (TTA)n Simple_repeat Simple_repeat 2 33 0 5 793 2322 182 14 2 chr6 27381135 27381575 -122135462 - Lx2A1 LINE L1 0 7008 6564 5 793 268 364 0 0 chr6 27381666 27381765 -122135272 + MIR SINE MIR 132 230 -32 5 793 313 335 93 33 chr6 27382299 27382481 -122134556 + MIR SINE MIR 14 206 -56 5 793 520 302 39 34 chr6 27382953 27383159 -122133878 + RLTR15 LTR ERVK 56 262 -97 5 793 27 0 0 0 chr6 27383915 27383942 -122133095 + AT_rich Low_complexity Low_complexity 1 27 0 5 793 291 359 96 14 chr6 27384247 27384456 -122132581 + MIRc SINE MIR 10 235 -33 5 793 4834 37 0 0 chr6 27384993 27385565 -122131472 - L1Md_T LINE L1 0 6582 6011 5 793 341 341 22 7 chr6 27386202 27386341 -122130696 + L2 LINE L2 2775 2915 -504 5 793 3308 57 2 12 chr6 27388456 27388884 -122128153 - L1Md_F2 LINE L1 -3 6579 6156 5 793 1311 228 60 68 chr6 27388962 27389290 -122127747 - ORR1C2 LTR MaLR -2 382 56 5 793 643 234 216 0 chr6 27389290 27389457 -122127580 + B3 SINE B2 4 206 -10 5 793 1311 228 60 68 chr6 27389457 27389513 -122127524 - ORR1C2 LTR MaLR -329 55 1 5 793 6719 76 44 6 chr6 27390096 27391041 -122125996 - L1Md_F2 LINE L1 0 6582 5618 5 793 222 116 22 44 chr6 27391058 27391103 -122125934 + T-rich Low_complexity Low_complexity 2 45 0 5 793 1114 95 0 0 chr6 27391159 27391306 -122125731 + B1_Mus1 SINE Alu 2 148 0 5 793 350 353 65 0 chr6 27391967 27392120 -122124917 - RSINE1 SINE B4 0 165 3 5 793 257 309 0 48 chr6 27392856 27392967 -122124070 + ID4 SINE ID 2 101 -51 5 793 835 189 0 0 chr6 27392991 27393139 -122123898 + B1_Mus1 SINE Alu 1 148 0 5 793 435 19 0 0 chr6 27393225 27393277 -122123760 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 793 282 238 0 0 chr6 27393428 27393491 -122123546 + Lx3C LINE L1 6912 6974 -2 5 793 35 71 0 0 chr6 27393857 27393927 -122123110 + AT_rich Low_complexity Low_complexity 1 70 0 5 794 1308 77 33 11 chr6 27394081 27394264 -122122773 + B2_Mm2 SINE B2 1 187 -8 5 794 29372 165 33 89 chr6 27394373 27395127 -122121910 + L1_Mus2 LINE L1 556 1262 -5395 5 794 528 16 0 0 chr6 27395127 27395188 -122121849 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 794 29372 112 11 8 chr6 27395188 27400468 -122116569 + L1_Mus2 LINE L1 1263 6565 -1 5 794 561 297 15 70 chr6 27400492 27400691 -122116346 + B3A SINE B2 11 198 0 5 794 7311 102 5 15 chr6 27401375 27402750 -122114287 - L1_Mus4 LINE L1 -7 6629 5268 5 794 720 267 17 0 chr6 27406016 27406033 -122111004 - Lx5 LINE L1 -262 6788 6772 5 794 808 213 16 5 chr6 27406033 27406222 -122110815 - Lx5 LINE L1 -4 7046 6856 5 794 720 267 17 0 chr6 27406222 27406384 -122110653 - Lx5 LINE L1 -279 6771 6607 5 794 1634 176 32 3 chr6 27406375 27406689 -122110348 + Lx5 LINE L1 5651 5973 -1077 5 794 706 194 8 8 chr6 27406689 27406819 -122110218 + Lx5 LINE L1 6469 6598 -452 5 794 415 270 2 4 chr6 27406846 27406936 -122110101 + RSINE1 SINE B4 5 93 -199 5 794 517 40 13 13 chr6 27406973 27407050 -122109987 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 5 794 1033 244 158 25 chr6 27407388 27407754 -122109283 + MTD LTR MaLR 5 419 0 5 794 183 80 0 0 chr6 27407998 27408023 -122109014 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 794 338 270 0 51 chr6 27408325 27408442 -122108595 + Lx9 LINE L1 7365 7475 -169 5 794 198 91 0 0 chr6 27408446 27408479 -122108558 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 5 794 250 214 109 64 chr6 27409277 27409387 -122107650 + L1MB3 LINE L1 6067 6181 -2 5 794 407 362 53 0 chr6 27409564 27409771 -122107266 + AmnSINE1 SINE SINE 287 504 -71 5 794 230 275 22 11 chr6 27409980 27410072 -122106965 + (TATATG)n Simple_repeat Simple_repeat 6 98 0 5 794 208 151 18 36 chr6 27410168 27410223 -122106814 + (TTA)n Simple_repeat Simple_repeat 2 55 0 5 794 555 16 0 0 chr6 27412088 27412152 -122104885 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 794 1064 309 19 19 chr6 27412242 27412611 -122104426 + Lx7 LINE L1 6930 7298 -398 5 794 2328 86 3 61 chr6 27412904 27413250 -122103787 - ORR1A2 LTR MaLR 0 327 2 5 794 342 81 113 0 chr6 27413543 27413605 -122103432 + RMER19C LTR ERVK 1 69 -542 5 794 7058 120 18 5 chr6 27413607 27414945 -122102092 - Lx LINE L1 -8 6646 5289 5 794 1193 256 35 38 chr6 27414962 27415318 -122101719 + RMER19C LTR ERVK 308 902 0 5 794 22 0 0 0 chr6 27415802 27415824 -122101213 + AT_rich Low_complexity Low_complexity 1 22 0 5 794 1200 198 84 4 chr6 27416501 27416739 -122100298 - MTC LTR MaLR 0 421 165 5 794 181 0 33 33 chr6 27416928 27416958 -122100079 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 5 794 2410 57 0 40 chr6 27416960 27417288 -122099749 - L1_Mus2 LINE L1 0 6566 6252 5 794 353 264 11 0 chr6 27417304 27417395 -122099642 - MTC LTR MaLR -320 101 10 5 794 245 313 147 37 chr6 27417749 27417885 -122099152 + MIR SINE MIR 111 261 -1 5 794 928 293 64 17 chr6 27418081 27418425 -122098612 + Kanga11a DNA Tc2 347 706 -264 5 794 24 32 0 0 chr6 27419442 27419473 -122097564 + AT_rich Low_complexity Low_complexity 1 31 0 5 794 285 280 14 31 chr6 27420259 27420367 -122096670 + MIRb SINE MIR 119 227 -35 5 794 31 26 0 0 chr6 27420707 27420745 -122096292 + AT_rich Low_complexity Low_complexity 1 38 0 5 794 412 86 0 28 chr6 27421080 27421152 -122095885 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 794 2592 241 108 42 chr6 27422140 27423279 -122093758 + RMER1B Other Other 2 1065 -1 5 794 585 278 5 58 chr6 27423562 27423768 -122093269 - B3A SINE B2 -3 195 1 5 794 1040 25 44 0 chr6 27428114 27428274 -122088763 + (TG)n Simple_repeat Simple_repeat 2 168 0 5 794 980 146 65 35 chr6 27429204 27429403 -122087634 - Lx3A LINE L1 0 6981 6777 5 794 2285 109 0 9 chr6 27429403 27429746 -122087291 + Lx7 LINE L1 5307 5641 -2055 5 794 256 356 28 34 chr6 27429770 27429929 -122087108 + MIRb SINE MIR 102 265 -3 5 794 21 0 0 0 chr6 27430761 27430782 -122086255 + AT_rich Low_complexity Low_complexity 1 21 0 5 794 180 319 157 16 chr6 27431569 27431690 -122085347 + L3 LINE CR1 3530 3667 -822 5 794 275 281 46 69 chr6 27432374 27432504 -122084533 - MIR SINE MIR -26 236 110 5 794 367 112 25 0 chr6 27432687 27432767 -122084270 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 794 1073 83 14 7 chr6 27433319 27433465 -122083572 + B1_Mm SINE Alu 1 147 0 5 794 240 242 0 0 chr6 27433467 27433562 -122083475 + A-rich Low_complexity Low_complexity 1 95 0 5 794 22 0 0 0 chr6 27434764 27434786 -122082251 + AT_rich Low_complexity Low_complexity 1 22 0 5 794 660 97 35 0 chr6 27434970 27435084 -122081953 + (GAAA)n Simple_repeat Simple_repeat 3 120 0 5 794 2925 267 104 30 chr6 27436024 27437489 -122079548 + L1_Mur3 LINE L1 3110 4683 -1197 5 794 921 118 0 0 chr6 27437526 27437704 -122079333 + (GA)n Simple_repeat Simple_repeat 1 178 0 5 794 183 42 0 0 chr6 27437723 27437747 -122079290 + (CAGAGA)n Simple_repeat Simple_repeat 5 28 0 5 794 279 343 94 31 chr6 27437749 27437972 -122079065 + Lx8 LINE L1 7230 7466 -7 5 794 522 279 138 70 chr6 27437988 27438532 -122078505 + L1_Rod LINE L1 4654 5234 -613 5 794 478 291 82 11 chr6 27438581 27438597 -122078440 - B3A SINE B2 -1 197 179 5 794 468 0 0 0 chr6 27438597 27438649 -122078388 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 794 478 291 82 11 chr6 27438649 27438816 -122078221 - B3A SINE B2 -20 178 1 5 794 1462 318 66 39 chr6 27438882 27439521 -122077516 + MTE-int LTR MaLR 787 1442 -138 5 794 737 252 94 154 chr6 27439777 27440180 -122076857 + MTE2a LTR MaLR 1 379 0 6 794 312 27 0 0 chr6 27440400 27440437 -122076600 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 794 384 22 0 0 chr6 27440437 27440481 -122076556 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 794 531 261 23 8 chr6 27440485 27440616 -122076421 + Lx8 LINE L1 6217 6349 -1124 6 794 1333 324 50 42 chr6 27440615 27441236 -122075801 + Lx8 LINE L1 6492 7117 -356 6 794 253 191 21 114 chr6 27441660 27441742 -122075295 + ID_B1 SINE B4 87 161 -63 6 794 207 274 58 78 chr6 27441806 27441909 -122075128 - L2c LINE L2 -4 3383 3283 6 794 24 0 0 0 chr6 27442302 27442326 -122074711 + AT_rich Low_complexity Low_complexity 1 24 0 6 794 1877 55 0 4 chr6 27442521 27442760 -122074277 - L1Md_T LINE L1 0 6582 6345 6 794 3206 24 0 0 chr6 27442760 27443132 -122073905 + L1Md_T LINE L1 5965 6336 -246 6 794 29 28 0 0 chr6 27443296 27443332 -122073705 + AT_rich Low_complexity Low_complexity 1 36 0 6 794 1129 101 14 7 chr6 27443844 27444135 -122072902 + (CATA)n Simple_repeat Simple_repeat 1 293 0 6 794 201 147 29 0 chr6 27444135 27444169 -122072868 + GA-rich Low_complexity Low_complexity 3 37 0 6 794 954 26 0 0 chr6 27444621 27444734 -122072303 + (TTTCC)n Simple_repeat Simple_repeat 3 115 0 6 794 2613 79 55 10 chr6 27444746 27445131 -122071906 - L1_Mus3 LINE L1 0 6638 6237 6 794 805 287 173 53 chr6 27445735 27446067 -122070970 - ORR1D2 LTR MaLR 0 374 3 6 794 358 368 17 0 chr6 27446272 27446389 -122070648 + B4 SINE B4 2 120 -172 6 794 297 0 0 0 chr6 27446459 27446492 -122070545 + (TATG)n Simple_repeat Simple_repeat 2 34 0 6 794 184 262 24 59 chr6 27446597 27446682 -122070355 + L3 LINE CR1 3557 3638 -851 6 794 453 271 80 28 chr6 27447506 27447719 -122069318 + Lx8 LINE L1 6583 6806 -667 6 794 25 31 0 0 chr6 27447719 27447751 -122069286 + AT_rich Low_complexity Low_complexity 1 32 0 6 794 3305 98 47 10 chr6 27448006 27448493 -122068544 - L1_Mus3 LINE L1 -6 6632 6128 6 794 2635 117 5 0 chr6 27448493 27448902 -122068135 + L1_Mus3 LINE L1 5238 5648 -235 6 794 2089 89 27 51 chr6 27448902 27449233 -122067804 - IAPLTR2b LTR ERVK -4 323 1 6 794 3184 88 23 1 chr6 27449233 27449705 -122067332 + L1_Mus3 LINE L1 5653 6481 -577 6 794 247 227 15 15 chr6 27449832 27449899 -122067138 + Lx8 LINE L1 6796 6862 -611 6 794 1697 286 41 40 chr6 27450325 27450646 -122066391 - Lx6 LINE L1 -7 7453 7126 6 794 441 36 0 0 chr6 27450646 27450701 -122066336 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 794 1697 286 41 40 chr6 27450701 27450962 -122066075 - Lx6 LINE L1 -335 7125 6870 6 794 849 218 336 59 chr6 27451027 27451471 -122065566 + RMER2 LTR ERV1 1 567 0 6 794 329 22 44 0 chr6 27451472 27451517 -122065520 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6 794 375 105 0 0 chr6 27451665 27451722 -122065315 + (T)n Simple_repeat Simple_repeat 1 57 0 6 794 1004 88 17 6 chr6 27451755 27451927 -122065110 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 6 794 1176 167 23 23 chr6 27451945 27452165 -122064872 - Lx4A LINE L1 -2 7056 6837 6 794 617 276 34 45 chr6 27452165 27452412 -122064625 - Lx6 LINE L1 -770 6280 5985 6 794 653 338 70 50 chr6 27452407 27453130 -122063907 + Lx7 LINE L1 6726 7471 -2 6 794 360 0 0 0 chr6 27453348 27453388 -122063649 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 794 243 88 0 0 chr6 27453653 27453687 -122063350 + (TTCTG)n Simple_repeat Simple_repeat 4 37 0 6 794 381 244 0 131 chr6 27454646 27454671 -122062366 + MT2B LTR ERVL 146 152 -449 6 794 888 100 0 0 chr6 27454671 27454791 -122062246 + B1_Mus1 SINE Alu 2 121 -27 6 794 1323 292 55 22 chr6 27456642 27457058 -122059979 - Lx5 LINE L1 0 7050 6621 6 794 2168 118 182 12 chr6 27457065 27457477 -122059560 + RLTR44D LTR ERVK 3 484 -2 6 794 1402 100 8 51 chr6 27457488 27457741 -122059296 + RLTR44-int LTR ERVK 1 242 -2570 6 794 3216 85 3 58 chr6 27457761 27458374 -122058663 + RLTR44-int LTR ERVK 816 1332 -1480 6 794 498 257 29 48 chr6 27458439 27458722 -122058315 + IAPEz-int LTR ERVK 3168 3672 -2809 6 794 4478 55 0 0 chr6 27458730 27459299 -122057738 + RLTR44-int LTR ERVK 2244 2812 0 6 794 2383 113 165 5 chr6 27459299 27459718 -122057319 + RLTR44D LTR ERVK 1 486 0 6 794 1258 270 36 24 chr6 27459732 27460413 -122056624 - Lx5 LINE L1 -574 6886 6007 6 794 1173 82 0 0 chr6 27460655 27460802 -122056235 + B1_Mus2 SINE Alu 1 147 0 6 794 186 71 0 0 chr6 27460802 27460830 -122056207 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 794 2302 302 62 59 chr6 27461826 27462845 -122054192 + Lx5 LINE L1 5953 6974 -76 6 794 423 0 0 0 chr6 27462956 27463003 -122054034 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 6 794 562 284 10 56 chr6 27463017 27463200 -122053837 + B3 SINE B2 1 176 -22 6 794 465 325 28 73 chr6 27463234 27463413 -122053624 + B4A SINE B4 2 172 -120 6 794 211 193 0 50 chr6 27463452 27463479 -122053558 + A-rich Low_complexity Low_complexity 3 29 0 6 794 186 43 0 0 chr6 27463479 27463502 -122053535 + (CCA)n Simple_repeat Simple_repeat 3 25 0 6 794 211 193 0 50 chr6 27463502 27463534 -122053503 + A-rich Low_complexity Low_complexity 30 59 0 6 794 318 321 58 0 chr6 27463535 27463672 -122053365 + Lx7 LINE L1 6334 6478 -1218 6 794 1010 245 177 3 chr6 27464668 27464967 -122052070 + MTD LTR MaLR 1 351 -68 6 794 735 106 0 0 chr6 27464969 27465009 -122052028 + (GAA)n Simple_repeat Simple_repeat 1 40 0 6 794 1371 62 0 0 chr6 27465009 27465187 -122051850 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 6 794 735 106 0 0 chr6 27465187 27465259 -122051778 + (GAA)n Simple_repeat Simple_repeat 2 73 0 6 794 349 260 13 3 chr6 27465259 27465354 -122051683 + MTD LTR MaLR 312 419 0 6 794 217 217 0 0 chr6 27465874 27465912 -122051125 + polypurine Low_complexity Low_complexity 2 39 0 6 794 1001 89 7 0 chr6 27465912 27466058 -122050979 + (GGAA)n Simple_repeat Simple_repeat 1 147 0 6 794 281 175 32 0 chr6 27466065 27466128 -122050909 + GA-rich Low_complexity Low_complexity 4 68 0 6 794 337 341 65 33 chr6 27466221 27466436 -122050601 + L1MB7 LINE L1 5788 6009 -175 6 794 704 311 108 0 chr6 27466570 27466830 -122050207 + B4A SINE B4 1 288 -4 6 794 210 191 0 0 chr6 27466873 27466920 -122050117 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 794 627 121 0 0 chr6 27467032 27467131 -122049906 + (GGAA)n Simple_repeat Simple_repeat 4 102 0 6 794 241 238 32 0 chr6 27467135 27467198 -122049839 + GA-rich Low_complexity Low_complexity 1 65 0 6 794 2901 56 50 11 chr6 27469181 27469562 -122047475 + MTA_Mm LTR MaLR 1 396 0 6 794 2608 88 35 0 chr6 27469562 27469939 -122047098 + MTA_Mm-int LTR MaLR 1 390 -708 6 794 35130 30 17 7 chr6 27469940 27474994 -122042043 + L1Md_T LINE L1 471 5586 -297 6 794 8509 32 0 0 chr6 27474994 27475990 -122041047 + L1Md_T LINE L1 5587 6582 0 6 794 4584 72 23 102 chr6 27475995 27476779 -122040258 + MTA_Mm-int LTR MaLR 377 1098 0 6 794 2452 62 103 27 chr6 27476779 27477147 -122039890 + MTA_Mm LTR MaLR 1 396 0 6 794 23 0 0 0 chr6 27477202 27477225 -122039812 + AT_rich Low_complexity Low_complexity 1 23 0 6 794 306 0 0 0 chr6 27478502 27478536 -122038501 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 794 1886 93 19 0 chr6 27478539 27478807 -122038230 - L1_Mus1 LINE L1 -6 6561 6289 6 794 2125 67 3 0 chr6 27478807 27479090 -122037947 + L1Md_F2 LINE L1 6007 6290 -292 6 794 1238 66 0 14 chr6 27479937 27480152 -122036885 + (TG)n Simple_repeat Simple_repeat 1 212 0 6 794 434 299 82 0 chr6 27480191 27480338 -122036699 - B4 SINE B4 -4 288 130 6 794 256 333 0 0 chr6 27480357 27480435 -122036602 - B4 SINE B4 -208 84 7 6 794 1111 349 55 27 chr6 27481736 27482451 -122034586 - Lx8 LINE L1 -481 6992 6258 6 794 4992 57 5 0 chr6 27482452 27483072 -122033965 + L1_Mus1 LINE L1 5945 6567 0 6 794 21 57 0 0 chr6 27483156 27483191 -122033846 + AT_rich Low_complexity Low_complexity 1 35 0 6 794 268 292 116 17 chr6 27483455 27483636 -122033401 - L1MA6 LINE L1 -366 5934 5736 6 794 312 361 36 72 chr6 27483642 27483949 -122033088 + Lx8 LINE L1 6962 7257 -216 6 794 445 371 30 30 chr6 27485105 27485269 -122031768 + RSINE1 SINE B4 2 165 0 6 794 200 138 29 58 chr6 27487476 27487504 -122029533 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 6 794 222 37 0 0 chr6 27487504 27487531 -122029506 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 6 794 200 138 29 58 chr6 27487531 27487571 -122029466 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 794 587 251 117 5 chr6 27487916 27488104 -122028933 + B3 SINE B2 1 209 -7 6 794 6372 59 4 2 chr6 27488109 27488940 -122028097 + L1_Mus1 LINE L1 5736 6567 0 6 794 28 0 0 0 chr6 27488940 27488968 -122028069 + AT_rich Low_complexity Low_complexity 1 28 0 6 794 554 302 71 6 chr6 27489100 27489283 -122027754 - B3 SINE B2 -3 213 19 6 794 303 280 0 39 chr6 27489754 27489832 -122027205 + MLT1E2 LTR MaLR 1 75 -552 6 794 294 375 87 14 chr6 27489850 27490139 -122026898 + MLT1E2 LTR MaLR 130 439 -66 6 794 1388 42 0 46 chr6 27490923 27491120 -122025917 - L1Md_A LINE L1 0 6582 6395 6 794 245 282 51 90 chr6 27492384 27492540 -122024497 - RMER12 LTR ERVK -447 875 726 6 794 354 373 66 33 chr6 27492545 27492728 -122024309 + MLT1J2 LTR MaLR 76 264 -184 6 794 525 288 32 13 chr6 27493007 27493162 -122023875 + B3 SINE B2 46 203 -13 6 794 330 243 0 0 chr6 27494165 27494268 -122022769 + (TG)n Simple_repeat Simple_repeat 1 103 0 6 794 243 146 0 0 chr6 27495860 27495901 -122021136 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 6 794 282 185 24 12 chr6 27496365 27496447 -122020590 + GA-rich Low_complexity Low_complexity 2 84 0 6 794 538 328 35 15 chr6 27497178 27497379 -122019658 + ORR1E LTR MaLR 6 210 -149 6 794 3726 208 73 77 chr6 27497388 27498269 -122018768 + RMER19B LTR ERVK 1 877 -25 6 794 1141 69 7 0 chr6 27498279 27498423 -122018614 + B1_Mm SINE Alu 3 147 0 6 794 312 298 60 26 chr6 27498499 27498616 -122018421 + ORR1E LTR MaLR 259 379 0 6 794 931 131 176 40 chr6 27498651 27498850 -122018187 - URR1A DNA MER1_type 0 226 1 6 794 1120 80 0 0 chr6 27498906 27499044 -122017993 + B1_Mus1 SINE Alu 1 138 -10 6 794 486 0 0 0 chr6 27499044 27499098 -122017939 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 794 251 195 4 101 chr6 27499871 27500000 -122017037 + L1Md_F LINE L1 532 595 -5924 6 794 3968 143 50 11 chr6 27500002 27500923 -122016114 + L1Md_F LINE L1 491 1453 -4430 1 794 347 261 161 7 chr6 27501735 27501878 -122015159 + MIRm SINE MIR 99 263 -13 2 794 182 347 26 13 chr6 27501971 27502047 -122014990 - L4 LINE RTE -15 2014 1938 3 794 546 29 0 0 chr6 27502052 27502120 -122014917 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 4 794 9408 103 2 1 chr6 27502120 27503521 -122013516 + L1_Mm LINE L1 1457 2858 -3025 5 794 5025 102 11 1 chr6 27503514 27504244 -122012793 + L1_Mm LINE L1 4628 5364 -519 5 794 35997 38 2 39 chr6 27504233 27509907 -122007130 + L1_Mus1 LINE L1 1 5589 -297 6 794 8388 33 0 1 chr6 27509907 27510904 -122006133 + L1Md_T LINE L1 5587 6582 0 7 794 35997 51 26 28 chr6 27510904 27512101 -122004936 + L1_Mus1 LINE L1 5590 6570 0 6 794 246 202 312 21 chr6 27512424 27512440 -122004597 - URR1A DNA MER1_type -101 125 110 8 794 1962 73 11 21 chr6 27512440 27512719 -122004318 + L1Md_F2 LINE L1 6307 6582 0 9 794 246 202 312 21 chr6 27512719 27512798 -122004239 - URR1A DNA MER1_type -117 109 2 8 794 1970 289 63 32 chr6 27513824 27514507 -122002530 + Lx8 LINE L1 6209 6912 -561 1 794 773 220 6 34 chr6 27514522 27514701 -122002336 + Lx8 LINE L1 7028 7201 -272 1 794 468 153 0 0 chr6 27514703 27514788 -122002249 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 794 213 312 90 13 chr6 27515024 27515102 -122001935 + BC1_Mm scRNA scRNA 14 97 -55 1 794 22 0 0 0 chr6 27515448 27515470 -122001567 + AT_rich Low_complexity Low_complexity 1 22 0 1 794 836 310 20 27 chr6 27515834 27516126 -122000911 - B4A SINE B4 -2 290 1 1 794 21 0 0 0 chr6 27516444 27516465 -122000572 + AT_rich Low_complexity Low_complexity 1 21 0 1 794 405 301 159 10 chr6 27516990 27517191 -121999846 + B4A SINE B4 34 264 -28 1 794 405 102 0 0 chr6 27517414 27517473 -121999564 + (GGA)n Simple_repeat Simple_repeat 2 60 0 1 794 571 282 28 17 chr6 27517547 27517727 -121999310 + B3A SINE B2 1 182 -16 1 794 21 0 0 0 chr6 27517754 27517775 -121999262 + AT_rich Low_complexity Low_complexity 1 21 0 1 794 2457 267 104 38 chr6 27517931 27518312 -121998725 + L1_Mur3 LINE L1 2881 3330 -2550 2 794 515 337 15 5 chr6 27518312 27518518 -121998519 + B3 SINE B2 2 209 -7 2 794 2457 267 104 38 chr6 27518518 27519395 -121997642 + L1_Mur3 LINE L1 3331 4222 -1658 2 794 2012 183 140 102 chr6 27519647 27520045 -121996992 + RMER6C LTR ERVK 1 452 -238 2 794 940 93 0 0 chr6 27520045 27520184 -121996853 + L1_Mus2 LINE L1 6427 6565 -1 2 794 2012 213 104 104 chr6 27520184 27520631 -121996406 + RMER6C LTR ERVK 387 720 0 2 794 539 196 7 0 chr6 27521520 27521658 -121995379 + (TG)n Simple_repeat Simple_repeat 2 140 0 2 794 555 351 65 22 chr6 27522651 27522881 -121994156 + LTR86A2 LTR ERVL 10 249 -259 2 794 487 334 50 53 chr6 27523728 27524069 -121992968 - L2c LINE L2 -1 3386 3047 2 794 196 330 145 21 chr6 27524448 27524634 -121992403 - L2c LINE L2 -839 2580 2372 2 794 1057 312 54 15 chr6 27524675 27525066 -121991971 + MTD LTR MaLR 14 419 0 2 795 1876 99 39 66 chr6 27525997 27526332 -121990705 + Lx LINE L1 6328 6653 -1 2 795 44 20 0 0 chr6 27526652 27526703 -121990334 + AT_rich Low_complexity Low_complexity 1 51 0 2 795 468 0 0 0 chr6 27527488 27527540 -121989497 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 795 212 376 35 12 chr6 27527823 27527909 -121989128 + ID_B1 SINE B4 88 175 -49 3 795 405 301 97 30 chr6 27527975 27528242 -121988795 - Tigger12c DNA MER2_type -126 608 324 3 795 204 125 0 0 chr6 27528263 27528295 -121988742 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 795 2187 126 29 6 chr6 27529352 27529703 -121987334 + RLTR15 LTR ERVK 1 359 0 3 795 474 300 77 0 chr6 27529927 27530057 -121986980 - RSINE1 SINE B4 -17 148 9 3 795 413 318 0 0 chr6 27530094 27530204 -121986833 - PB1D10 SINE Alu -7 110 1 3 795 204 372 39 70 chr6 27531049 27531205 -121985832 + MIRb SINE MIR 8 158 -110 3 795 779 233 78 21 chr6 27532930 27533123 -121983914 - B3 SINE B2 -1 215 12 3 795 21 57 0 0 chr6 27533957 27533992 -121983045 + AT_rich Low_complexity Low_complexity 1 35 0 3 795 529 345 20 0 chr6 27534009 27534157 -121982880 - RSINE1 SINE B4 -10 155 5 4 795 270 0 0 0 chr6 27534927 27534957 -121982080 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 795 870 71 0 0 chr6 27534963 27535090 -121981947 + (TC)n Simple_repeat Simple_repeat 2 128 0 4 795 216 97 0 0 chr6 27535090 27535120 -121981917 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 795 283 365 13 0 chr6 27535234 27535390 -121981647 + L1M5 LINE L1 4097 4254 -1892 4 795 21 36 0 0 chr6 27535510 27535538 -121981499 + AT_rich Low_complexity Low_complexity 1 28 0 4 795 310 327 74 49 chr6 27535986 27536336 -121980701 + L1M5 LINE L1 4944 5302 -844 4 795 488 229 18 0 chr6 27536342 27536451 -121980586 - PB1D9 SINE Alu -6 114 4 4 795 705 275 14 77 chr6 27536475 27536493 -121980544 - B3A SINE B2 0 198 187 4 795 249 33 0 0 chr6 27536493 27536523 -121980514 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 795 258 32 0 0 chr6 27536523 27536553 -121980484 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 795 836 275 14 77 chr6 27536553 27536742 -121980295 - B3 SINE B2 -27 189 3 4 795 565 314 65 27 chr6 27536758 27537128 -121979909 + L1M5 LINE L1 5321 5704 -475 4 795 239 213 0 0 chr6 27537190 27537237 -121979800 + L1Md_F LINE L1 286 332 -6187 5 795 15820 65 5 15 chr6 27537236 27539367 -121977670 + L1Md_F2 LINE L1 3478 5586 -297 5 795 7941 54 0 9 chr6 27539367 27540372 -121976665 + L1Md_F2 LINE L1 5587 6582 0 5 795 239 304 109 15 chr6 27540374 27540511 -121976526 + L1M5 LINE L1 5748 5897 -282 4 795 423 0 0 0 chr6 27540735 27540782 -121976255 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 795 1771 56 35 0 chr6 27540841 27541073 -121975964 + L1_Mus1 LINE L1 6328 6567 0 5 795 297 228 12 60 chr6 27541529 27541613 -121975424 - Lx5 LINE L1 -435 6615 6536 5 795 1425 210 58 6 chr6 27541598 27541909 -121975128 + Lx5 LINE L1 6717 7043 -7 5 795 261 98 0 0 chr6 27541942 27541983 -121975054 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 5 795 197 33 0 32 chr6 27542031 27542062 -121974975 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 5 795 277 269 1 1 chr6 27542062 27542147 -121974890 + MIR SINE MIR 179 267 -1 5 795 474 18 0 0 chr6 27542602 27542657 -121974380 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 795 319 227 0 9 chr6 27543231 27543342 -121973695 + Lx9 LINE L1 7533 7642 -2 5 795 1528 209 53 8 chr6 27544232 27544593 -121972444 - Lx2B LINE L1 -18 6982 6606 6 795 25 0 0 0 chr6 27545484 27545509 -121971528 + AT_rich Low_complexity Low_complexity 1 25 0 6 795 558 0 0 0 chr6 27546373 27546435 -121970602 + (CTG)n Simple_repeat Simple_repeat 1 62 0 6 795 332 0 0 0 chr6 27546435 27546472 -121970565 - HAL1-3A_ME LINE L1 -846 2012 1976 6 795 840 300 63 7 chr6 27546472 27546774 -121970263 - Lx8 LINE L1 -172 7301 6983 6 795 1453 341 32 8 chr6 27546779 27547379 -121969658 + Lx8 LINE L1 6370 6983 -490 6 795 680 274 109 89 chr6 27548131 27548329 -121968708 + L1MC1 LINE L1 5636 5825 -508 6 795 6500 102 38 70 chr6 27548329 27549464 -121967573 + MTB-int LTR MaLR 1 1098 0 6 795 2815 108 2 0 chr6 27549464 27549863 -121967174 + MTB LTR MaLR 1 400 0 6 795 680 274 109 89 chr6 27549863 27550103 -121966934 + L1MC1 LINE L1 5826 6083 -250 6 795 493 241 166 18 chr6 27550835 27550963 -121966074 + B1_Mur1 SINE Alu 3 149 0 6 795 495 344 41 54 chr6 27551304 27551599 -121965438 + B4A SINE B4 2 292 0 6 795 250 310 120 0 chr6 27552362 27552462 -121964575 - MIRb SINE MIR -109 159 48 6 795 1181 93 0 5 chr6 27552729 27552935 -121964102 + (GAAA)n Simple_repeat Simple_repeat 1 205 0 7 795 331 243 0 0 chr6 27553943 27554017 -121963020 + RSINE1 SINE B4 3 76 -89 7 795 252 86 0 0 chr6 27554062 27554097 -121962940 + (CAAT)n Simple_repeat Simple_repeat 1 35 0 7 795 35 24 0 0 chr6 27554097 27554139 -121962898 + AT_rich Low_complexity Low_complexity 1 42 0 7 795 379 379 57 49 chr6 27554544 27554829 -121962208 + B4A SINE B4 2 292 0 7 795 251 222 17 17 chr6 27554835 27554954 -121962083 + (CA)n Simple_repeat Simple_repeat 1 119 0 7 795 21 36 0 0 chr6 27555285 27555313 -121961724 + AT_rich Low_complexity Low_complexity 1 28 0 7 795 787 151 207 0 chr6 27555496 27555675 -121961362 - URR1B DNA MER1_type -9 216 1 7 795 180 111 0 0 chr6 27555743 27555770 -121961267 - L3 LINE CR1 -2341 2148 2122 7 795 5006 145 75 17 chr6 27557025 27557944 -121959093 + Lx2B LINE L1 6024 6995 -5 7 795 793 80 0 107 chr6 27558114 27558254 -121958783 + B1_Mus1 SINE Alu 24 148 0 8 795 8807 98 11 3 chr6 27558277 27560534 -121956503 + Lx3_Mus LINE L1 4717 6991 -18 8 795 207 0 0 0 chr6 27560534 27560557 -121956480 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 8 795 326 61 0 20 chr6 27560734 27560784 -121956253 + (TA)n Simple_repeat Simple_repeat 1 49 0 8 795 250 254 8 38 chr6 27560784 27560915 -121956122 + Lx9 LINE L1 7518 7644 0 8 795 35 24 0 0 chr6 27561093 27561135 -121955902 + AT_rich Low_complexity Low_complexity 1 42 0 8 795 321 26 0 0 chr6 27562056 27562094 -121954943 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 795 297 0 0 0 chr6 27562094 27562126 -121954911 + (GA)n Simple_repeat Simple_repeat 1 33 0 8 795 474 83 0 0 chr6 27562234 27562306 -121954731 + (GA)n Simple_repeat Simple_repeat 2 73 0 8 795 911 254 72 69 chr6 27563211 27563317 -121953720 - Lx6 LINE L1 -27 7433 7319 8 795 207 0 0 0 chr6 27563317 27563340 -121953697 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 795 911 254 72 69 chr6 27563340 27563567 -121953470 - Lx6 LINE L1 -142 7318 7099 8 795 258 331 96 85 chr6 27563720 27563908 -121953129 + L4 LINE RTE 759 948 -1081 9 795 378 0 0 0 chr6 27564339 27564381 -121952656 + (TTA)n Simple_repeat Simple_repeat 1 42 0 9 795 3729 107 5 18 chr6 27564381 27564945 -121952092 - L1_Mus4 LINE L1 -16 6620 6064 9 795 276 38 56 19 chr6 27566643 27566697 -121950340 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 9 795 260 293 139 52 chr6 27569346 27569519 -121947518 - MIR3 SINE MIR -5 203 16 9 795 417 20 0 0 chr6 27569754 27569804 -121947233 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 9 795 194 33 67 0 chr6 27569804 27569834 -121947203 + (CAGAGA)n Simple_repeat Simple_repeat 5 36 0 9 795 201 347 23 62 chr6 27571021 27571150 -121945887 + MER5A DNA MER1_type 61 184 -5 9 795 350 365 65 28 chr6 27571326 27571574 -121945463 - MER2 DNA MER2_type 0 345 89 9 795 271 364 0 0 chr6 27572283 27572360 -121944677 + PB1D10 SINE Alu 15 91 -26 1 795 360 231 13 0 chr6 27572378 27572456 -121944581 + B4A SINE B4 1 79 -213 1 795 413 252 37 37 chr6 27572878 27572985 -121944052 - PB1D10 SINE Alu -9 108 2 1 795 29 47 0 0 chr6 27573651 27573694 -121943343 + AT_rich Low_complexity Low_complexity 1 43 0 1 795 249 200 0 18 chr6 27573865 27573921 -121943116 + Lx7 LINE L1 7187 7241 -455 1 795 6193 21 0 0 chr6 27574232 27574984 -121942053 + L1Md_T LINE L1 4835 5586 -297 1 795 8435 37 0 0 chr6 27574984 27575980 -121941057 + L1Md_T LINE L1 5587 6582 0 1 795 21 36 0 0 chr6 27576094 27576122 -121940915 + AT_rich Low_complexity Low_complexity 1 28 0 1 795 476 32 16 0 chr6 27578317 27578379 -121938658 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 795 231 326 12 0 chr6 27579418 27579504 -121937533 + MIRb SINE MIR 118 204 -64 1 795 313 319 12 0 chr6 27579702 27579810 -121937227 + MIR SINE MIR 51 161 -47 1 795 366 151 0 0 chr6 27579929 27580002 -121937035 + CT-rich Low_complexity Low_complexity 2 74 0 1 795 270 0 0 0 chr6 27580071 27580101 -121936936 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 795 739 168 8 0 chr6 27580483 27580608 -121936429 - Lx6 LINE L1 -1109 6351 6226 1 795 2101 236 78 2 chr6 27580609 27581421 -121935616 + Lx7 LINE L1 6412 7281 -179 1 795 372 311 19 9 chr6 27582304 27582411 -121934626 + B4A SINE B4 7 114 -178 1 795 228 67 0 0 chr6 27582450 27582480 -121934557 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 795 217 303 77 26 chr6 27583420 27583498 -121933539 + L3b LINE CR1 377 458 -24 1 795 356 206 14 14 chr6 27585188 27585257 -121931780 + ID4_ SINE ID 5 73 -10 1 795 222 304 72 0 chr6 27585321 27585390 -121931647 - PB1D7 SINE Alu -36 84 11 1 795 705 24 0 0 chr6 27585454 27585537 -121931500 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 795 1802 229 51 26 chr6 27585934 27586454 -121930583 + RMER1A Other Other 82 718 -312 1 795 2023 180 125 12 chr6 27586426 27586456 -121930581 + L1_Mur1 LINE L1 5051 5083 -803 1 795 2224 149 8 23 chr6 27586456 27586848 -121930189 - Lx2A1 LINE L1 -4 7004 6619 1 795 2023 180 125 12 chr6 27586848 27587296 -121929741 + L1_Mur1 LINE L1 5084 5583 -303 1 795 1537 164 6 39 chr6 27587294 27587624 -121929413 + RMER1A Other Other 709 1027 -3 1 795 36887 7 0 0 chr6 27587644 27592970 -121924067 + L1Md_A LINE L1 260 5586 -297 1 795 9041 3 0 0 chr6 27592970 27593966 -121923071 + L1Md_A LINE L1 5587 6582 0 1 795 205 182 0 0 chr6 27594132 27594176 -121922861 + A-rich Low_complexity Low_complexity 1 44 0 1 795 342 0 0 0 chr6 27594740 27594778 -121922259 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 795 352 241 163 15 chr6 27595371 27595506 -121921531 - B4A SINE B4 -56 236 82 1 795 25 31 0 0 chr6 27598098 27598130 -121918907 + AT_rich Low_complexity Low_complexity 1 32 0 1 795 399 143 44 0 chr6 27598166 27598257 -121918780 + (CACTA)n Simple_repeat Simple_repeat 5 99 0 1 795 286 212 59 0 chr6 27600024 27600109 -121916928 - MER53 DNA hAT -99 94 5 1 795 343 284 71 5 chr6 27600325 27600523 -121916514 - L1MA5 LINE L1 -5 6295 6085 1 795 547 51 12 12 chr6 27600894 27600974 -121916063 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 795 28 0 0 0 chr6 27601008 27601036 -121916001 + AT_rich Low_complexity Low_complexity 1 28 0 1 795 244 241 17 0 chr6 27601470 27601528 -121915509 + MER53 DNA hAT 6 64 -129 1 795 25 31 0 0 chr6 27601927 27601959 -121915078 + AT_rich Low_complexity Low_complexity 1 32 0 1 795 4636 135 26 4 chr6 27603676 27604397 -121912640 + RMER19A LTR ERVK 1 737 0 1 795 458 299 22 7 chr6 27604466 27604604 -121912433 - ID_B1 SINE B4 -4 220 81 1 795 492 289 132 3 chr6 27606634 27606974 -121910063 - L1MA8 LINE L1 -37 6254 5871 1 795 207 0 0 0 chr6 27607280 27607303 -121909734 + (A)n Simple_repeat Simple_repeat 1 23 0 1 795 211 318 186 23 chr6 27608165 27608294 -121908743 + MIRc SINE MIR 16 165 -103 1 795 662 315 46 67 chr6 27609571 27609942 -121907095 + MER89 LTR ERV1 174 536 -23 1 795 794 285 95 44 chr6 27611589 27611978 -121905059 + MER89-int LTR ERV1 1746 2154 -4647 1 795 459 333 96 102 chr6 27612207 27612507 -121904530 - MLT1D LTR MaLR -8 497 172 1 795 1119 64 0 0 chr6 27612507 27612648 -121904389 + B1_Mus2 SINE Alu 1 141 -6 1 795 459 333 96 102 chr6 27612648 27612835 -121904202 - MLT1D LTR MaLR -334 171 13 1 795 255 384 43 64 chr6 27613916 27614146 -121902891 + MER89-int LTR ERV1 3161 3379 -3422 1 795 459 0 0 0 chr6 27614146 27614197 -121902840 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1 795 255 384 43 64 chr6 27614197 27614403 -121902634 + MER89-int LTR ERV1 3380 3587 -3214 1 795 1555 221 90 14 chr6 27614445 27614816 -121902221 + MTD LTR MaLR 10 405 -14 1 795 405 0 0 0 chr6 27615674 27615719 -121901318 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 795 385 329 64 85 chr6 27615796 27616185 -121900852 + RLTR26 LTR ERVK 95 475 -167 1 795 312 27 0 0 chr6 27616348 27616385 -121900652 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 795 306 0 0 0 chr6 27616385 27616418 -121900619 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 795 1396 261 48 48 chr6 27616470 27616992 -121900045 + MER89-int LTR ERV1 6274 6795 -6 1 795 477 322 105 47 chr6 27617099 27617376 -121899661 + MER89 LTR ERV1 267 559 0 1 795 303 347 56 17 chr6 27617462 27617641 -121899396 + MIRb SINE MIR 68 253 -15 1 795 246 95 0 0 chr6 27617645 27617687 -121899350 + (CTG)n Simple_repeat Simple_repeat 1 42 0 1 795 951 159 0 8 chr6 27617687 27617927 -121899110 + (TGG)n Simple_repeat Simple_repeat 1 238 0 1 795 1354 271 71 68 chr6 27618312 27618992 -121898045 + RMER1B Other Other 46 918 -148 1 795 821 258 95 5 chr6 27619012 27619234 -121897803 + Lx8 LINE L1 6380 6621 -852 1 795 712 364 57 19 chr6 27619252 27619728 -121897309 + Lx8 LINE L1 6972 7465 -8 1 795 27 29 0 0 chr6 27620293 27620327 -121896710 + AT_rich Low_complexity Low_complexity 1 34 0 1 795 26 0 0 0 chr6 27620512 27620538 -121896499 + AT_rich Low_complexity Low_complexity 1 26 0 1 795 30 0 0 0 chr6 27621333 27621363 -121895674 + AT_rich Low_complexity Low_complexity 1 30 0 1 795 240 35 0 0 chr6 27622065 27622094 -121894943 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 795 22 56 0 0 chr6 27622204 27622240 -121894797 + AT_rich Low_complexity Low_complexity 1 36 0 1 795 490 298 10 55 chr6 27622521 27622720 -121894317 + MER3 DNA MER1_type 1 190 -19 1 795 634 330 26 0 chr6 27623548 27623742 -121893295 + B3 SINE B2 1 199 -17 1 795 215 217 17 0 chr6 27623745 27623805 -121893232 + (CATA)n Simple_repeat Simple_repeat 4 64 0 1 795 737 308 109 20 chr6 27624197 27624648 -121892389 - L1MC4a LINE L1 -15 7867 7377 1 795 379 333 7 7 chr6 27624651 27624805 -121892232 + L2 LINE L2 1876 2029 -1390 1 795 199 391 64 29 chr6 27625180 27625351 -121891686 - L3 LINE CR1 -479 4010 3834 1 795 255 180 6 11 chr6 27625407 27625473 -121891564 - B1_Mur1 SINE Alu -23 126 60 1 795 267 79 0 0 chr6 27625493 27625531 -121891506 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 795 479 255 9 43 chr6 27625561 27625676 -121891361 - RSINE1 SINE B4 -51 114 4 1 795 201 74 0 0 chr6 27625677 27625704 -121891333 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 795 363 256 143 44 chr6 27626002 27626296 -121890741 - MER33 DNA MER1_type 0 324 2 1 795 725 58 10 0 chr6 27627027 27627130 -121889907 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 795 297 0 0 0 chr6 27627130 27627162 -121889875 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 795 522 0 0 0 chr6 27628345 27628403 -121888634 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 1 795 246 287 158 11 chr6 27628403 27628498 -121888539 - B1_Mur1 SINE Alu -12 137 29 1 795 275 264 78 86 chr6 27629789 27629905 -121887132 - MLT1A1 LTR MaLR -256 152 38 1 795 650 255 7 21 chr6 27630296 27630440 -121886597 - B1_Mur1 SINE Alu -5 144 3 1 795 4110 115 34 0 chr6 27632205 27632815 -121884222 + Lx3B LINE L1 6250 6880 -93 1 795 244 406 36 3 chr6 27633095 27633213 -121883824 + B1F1 SINE Alu 1 117 0 1 795 250 179 44 15 chr6 27635480 27635548 -121881489 + MER5A1 DNA MER1_type 41 110 -56 1 795 2077 145 0 97 chr6 27636024 27636458 -121880579 + RMER10B LTR ERVL 5 396 -2 1 795 21 57 0 0 chr6 27636727 27636762 -121880275 + AT_rich Low_complexity Low_complexity 1 35 0 1 795 234 263 158 0 chr6 27636807 27636883 -121880154 - PB1D10 SINE Alu -7 110 23 1 795 694 82 29 36 chr6 27637066 27637206 -121879831 - L1_Mus3 LINE L1 0 6638 6500 1 795 365 418 58 12 chr6 27637626 27637868 -121879169 - MLT1H1 LTR MaLR 0 555 303 1 795 335 299 77 0 chr6 27637916 27638033 -121879004 - MLT1H1 LTR MaLR -327 228 103 1 795 576 77 0 0 chr6 27638455 27638533 -121878504 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 795 183 80 0 0 chr6 27638542 27638567 -121878470 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 1 795 341 207 0 12 chr6 27638841 27638924 -121878113 + C-rich Low_complexity Low_complexity 1 82 0 1 795 541 256 93 12 chr6 27638925 27639087 -121877950 + MLT1D LTR MaLR 331 505 0 1 795 311 351 108 70 chr6 27640650 27640993 -121876044 - MLT1B LTR MaLR -29 361 6 1 795 1998 271 29 6 chr6 27641161 27641640 -121875397 + Lx5 LINE L1 6556 7045 -5 1 795 21 57 0 0 chr6 27641641 27641676 -121875361 + AT_rich Low_complexity Low_complexity 1 35 0 1 795 1108 340 103 21 chr6 27641829 27642450 -121874587 + Lx8 LINE L1 6670 7341 -132 1 795 6892 162 5 11 chr6 27642441 27643159 -121873878 + Lx2 LINE L1 4661 5374 -503 1 795 2809 157 112 26 chr6 27643159 27643697 -121873340 + RLTR31A_Mm LTR ERVK 1 584 0 1 795 6892 159 45 4 chr6 27643697 27644866 -121872171 + Lx2 LINE L1 5375 6646 -412 1 795 1337 152 9 18 chr6 27644855 27645082 -121871955 + Lx2 LINE L1 6765 6989 -8 1 795 548 313 17 58 chr6 27646462 27646757 -121870280 - B4A SINE B4 -8 284 2 1 795 1362 74 32 5 chr6 27647357 27647547 -121869490 + B2_Mm2 SINE B2 1 195 0 1 795 238 155 17 17 chr6 27648252 27648311 -121868726 + A-rich Low_complexity Low_complexity 5 63 0 1 795 983 283 83 6 chr6 27648875 27649202 -121867835 - Lx7 LINE L1 -420 7276 6925 1 795 7856 70 12 0 chr6 27649213 27650967 -121866070 - L1_Mus1 LINE L1 -1 6566 4789 1 795 587 244 0 8 chr6 27650961 27651081 -121865956 - Lx7 LINE L1 -748 6948 6830 1 795 187 54 54 0 chr6 27651089 27651126 -121865911 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 1 795 266 172 0 17 chr6 27651148 27651207 -121865830 - L1_Mur3 LINE L1 -3611 2269 2212 2 795 273 383 0 108 chr6 27651377 27651535 -121865502 + B1F SINE Alu 1 141 -8 2 795 204 97 0 0 chr6 27651893 27651924 -121865113 + (G)n Simple_repeat Simple_repeat 1 31 0 2 795 343 358 123 44 chr6 27652304 27652932 -121864105 - L2a LINE L2 -67 3359 2667 2 795 1281 304 93 18 chr6 27653251 27653808 -121863229 + MER90a LTR ERV1 9 607 -7 2 795 1004 310 157 27 chr6 27653865 27654631 -121862406 - L2a LINE L2 -1215 2204 1340 2 795 465 225 108 39 chr6 27654898 27655129 -121861908 - Charlie5 DNA MER1_type -5 2619 2373 2 795 921 156 167 0 chr6 27655196 27655376 -121861661 - URR1A DNA MER1_type -16 210 1 2 795 321 215 46 9 chr6 27655584 27655692 -121861345 + Lx9 LINE L1 7533 7644 0 2 796 989 352 100 13 chr6 27656578 27657176 -121859861 + Lx7 LINE L1 6464 7113 -583 2 796 612 110 0 0 chr6 27657185 27657276 -121859761 + L1_Mur3 LINE L1 4025 4115 -1765 2 796 1302 272 90 13 chr6 27657273 27657739 -121859298 + Lx6 LINE L1 5709 6210 -1250 2 796 3765 72 16 2 chr6 27658776 27659280 -121857757 - L1_Mus3 LINE L1 0 6638 6128 2 796 7013 106 9 18 chr6 27659280 27660686 -121856351 + L1_Mus3 LINE L1 5238 6631 -7 2 796 1143 189 14 5 chr6 27660719 27660942 -121856095 - URR1B DNA MER1_type 0 225 1 2 796 24 77 0 0 chr6 27661146 27661198 -121855839 + AT_rich Low_complexity Low_complexity 1 52 0 2 796 690 47 0 0 chr6 27661453 27661539 -121855498 + (TATATG)n Simple_repeat Simple_repeat 4 89 0 2 796 190 289 0 0 chr6 27661667 27661712 -121855325 + L4 LINE RTE 915 959 -1070 2 796 22 0 0 0 chr6 27663131 27663153 -121853884 + AT_rich Low_complexity Low_complexity 1 22 0 2 796 340 89 0 0 chr6 27663290 27663346 -121853691 + Lx LINE L1 6593 6648 -6 2 796 591 53 0 0 chr6 27663429 27663504 -121853533 + (TA)n Simple_repeat Simple_repeat 2 76 0 2 796 270 0 0 0 chr6 27663611 27663641 -121853396 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 796 353 268 145 13 chr6 27663641 27663800 -121853237 - Lx8 LINE L1 -35 7438 7259 2 796 1075 294 294 21 chr6 27663984 27665004 -121852033 - Lx8 LINE L1 0 7473 6176 2 796 310 364 40 6 chr6 27665212 27665386 -121851651 - L1MEe LINE L1 -3110 3036 2857 2 796 25 31 0 0 chr6 27666120 27666152 -121850885 + AT_rich Low_complexity Low_complexity 1 32 0 2 796 223 28 56 0 chr6 27666331 27666367 -121850670 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 796 602 60 12 0 chr6 27667277 27667360 -121849677 + (TC)n Simple_repeat Simple_repeat 2 85 0 2 796 237 98 65 16 chr6 27667365 27667427 -121849610 + A-rich Low_complexity Low_complexity 3 67 0 2 796 966 111 84 39 chr6 27667438 27667616 -121849421 + B2_Mm2 SINE B2 3 188 -7 2 796 383 0 21 0 chr6 27667647 27667694 -121849343 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 796 1792 268 74 6 chr6 27667699 27667985 -121849052 - Lx7 LINE L1 -389 7307 6989 2 796 513 0 0 0 chr6 27667985 27668042 -121848995 + (TTA)n Simple_repeat Simple_repeat 2 58 0 2 796 1792 268 74 6 chr6 27668042 27668296 -121848741 - Lx7 LINE L1 -708 6988 6730 2 796 343 307 116 13 chr6 27668354 27668594 -121848443 - L1MEe LINE L1 -4514 1652 1379 2 796 1362 283 26 20 chr6 27668621 27668977 -121848060 - MTE2b LTR MaLR -2 368 20 2 796 393 295 38 8 chr6 27668859 27668992 -121848045 - MT2A LTR ERVL -396 137 1 2 796 231 398 28 9 chr6 27668992 27669100 -121847937 - PB1 SINE Alu -15 112 3 2 796 29 28 0 0 chr6 27669469 27669505 -121847532 + AT_rich Low_complexity Low_complexity 1 36 0 2 796 265 306 28 0 chr6 27669544 27669616 -121847421 - ID4 SINE ID -4 79 6 2 796 440 300 49 24 chr6 27670489 27670694 -121846343 - L1MB8 LINE L1 -179 5999 5790 2 796 696 290 118 18 chr6 27670738 27671138 -121845899 - L1MB8 LINE L1 -484 5694 5255 2 796 315 264 55 0 chr6 27671179 27671289 -121845748 - L1MB8 LINE L1 -1065 5081 4966 2 796 5116 90 41 1 chr6 27672385 27673133 -121843904 + Lx3A LINE L1 6179 6956 -25 2 796 189 0 0 0 chr6 27673666 27673687 -121843350 + (T)n Simple_repeat Simple_repeat 1 21 0 2 796 434 163 61 71 chr6 27674740 27674839 -121842198 + PB1D10 SINE Alu 13 110 -7 2 796 324 330 56 17 chr6 27675258 27675489 -121841548 - MIRb SINE MIR -18 250 11 2 796 29 0 0 0 chr6 27675973 27676002 -121841035 + AT_rich Low_complexity Low_complexity 1 29 0 2 796 1850 258 12 30 chr6 27676919 27677483 -121839554 - L1_Rod LINE L1 -53 5794 5241 2 796 361 265 14 19 chr6 27677527 27677656 -121839381 + Lx9 LINE L1 7054 7148 -496 2 796 242 229 25 25 chr6 27677649 27677770 -121839267 + Lx9 LINE L1 7430 7550 -94 2 796 24 77 0 0 chr6 27677846 27677898 -121839139 + AT_rich Low_complexity Low_complexity 1 52 0 2 796 180 0 0 0 chr6 27678935 27678955 -121838082 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 2 796 1987 309 90 31 chr6 27680546 27681504 -121835533 + RMER15-int LTR ERVL 1051 2064 -2935 2 796 305 286 78 23 chr6 27682918 27683047 -121833990 + RMER15-int LTR ERVL 2088 2223 -2776 2 796 1787 257 98 67 chr6 27683191 27683971 -121833066 + RMER15-int LTR ERVL 4149 4954 -45 2 796 260 53 0 26 chr6 27683971 27684010 -121833027 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 796 1787 257 98 67 chr6 27684010 27684051 -121832986 + RMER15-int LTR ERVL 4955 4995 -4 2 796 469 343 70 8 chr6 27684167 27684408 -121832629 + RMER15 LTR ERVL 276 531 -44 2 796 292 300 0 0 chr6 27684662 27684732 -121832305 - MIRb SINE MIR -182 86 17 2 796 21 36 0 0 chr6 27685629 27685657 -121831380 + AT_rich Low_complexity Low_complexity 1 28 0 2 796 238 326 93 0 chr6 27685967 27686053 -121830984 - LTR33A LTR ERVL -281 239 146 2 796 393 141 0 0 chr6 27686240 27686311 -121830726 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 796 2233 281 121 30 chr6 27686461 27687453 -121829584 + Lx8 LINE L1 6211 7292 -181 2 796 398 16 32 0 chr6 27688434 27688497 -121828540 + L1Md_F3 LINE L1 6520 6584 0 2 796 498 260 105 0 chr6 27689747 27689876 -121827161 - B1_Mur1 SINE Alu 0 149 8 2 796 259 299 72 54 chr6 27691126 27691292 -121825745 - L2c LINE L2 -5 3382 3214 2 796 336 77 0 0 chr6 27692210 27692262 -121824775 + (TAA)n Simple_repeat Simple_repeat 3 54 0 2 796 188 263 111 40 chr6 27692477 27692576 -121824461 + L2c LINE L2 3264 3369 -18 2 796 290 190 17 0 chr6 27693619 27693677 -121823360 + MTC LTR MaLR 1 59 -362 2 796 1868 299 25 19 chr6 27693682 27694254 -121822783 + Lx5 LINE L1 6458 7032 -18 2 796 2019 168 20 26 chr6 27694296 27694509 -121822528 + MTC LTR MaLR 68 287 -134 2 796 3042 85 2 0 chr6 27694509 27694908 -121822129 + MTB LTR MaLR 1 400 0 2 796 2019 168 20 26 chr6 27694908 27695042 -121821995 + MTC LTR MaLR 288 413 -8 2 796 395 121 0 15 chr6 27695504 27695571 -121821466 - Lx9 LINE L1 -387 7257 7192 2 796 243 204 56 0 chr6 27697279 27697333 -121819704 - MIRc SINE MIR -130 138 82 2 796 255 312 13 25 chr6 27698740 27698819 -121818218 + L2a LINE L2 3309 3386 -40 2 796 231 36 0 0 chr6 27698990 27699018 -121818019 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 2 796 396 0 0 0 chr6 27699399 27699443 -121817594 + (TGG)n Simple_repeat Simple_repeat 1 44 0 2 796 5543 16 0 0 chr6 27700945 27701615 -121815422 - L1Md_T LINE L1 -528 5355 4686 2 796 1725 19 0 0 chr6 27701613 27701818 -121815219 + L1Md_T LINE L1 5382 5586 -297 2 796 8464 33 0 0 chr6 27701818 27702813 -121814224 + L1Md_T LINE L1 5587 6581 -1 2 796 749 73 0 9 chr6 27702937 27703047 -121813990 + (TC)n Simple_repeat Simple_repeat 2 110 0 2 796 641 330 21 104 chr6 27703099 27703305 -121813732 + ORR1E LTR MaLR 14 199 -160 2 796 435 68 0 0 chr6 27703305 27703364 -121813673 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 796 641 330 21 104 chr6 27703364 27703532 -121813505 + ORR1E LTR MaLR 200 357 -2 2 796 278 326 126 0 chr6 27703647 27703782 -121813255 + MIR3 SINE MIR 42 193 -15 2 796 512 290 16 0 chr6 27705789 27705913 -121811124 - RSINE1 SINE B4 -28 137 12 2 796 228 206 15 45 chr6 27706439 27706505 -121810532 + MER45R DNA Tip100 1278 1341 -240 2 796 189 0 0 0 chr6 27706532 27706553 -121810484 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 796 512 299 70 107 chr6 27706700 27707055 -121809982 + ORR1E LTR MaLR 1 344 -30 2 796 1623 229 42 54 chr6 27707793 27708217 -121808820 + MTD LTR MaLR 1 419 0 2 796 240 186 17 0 chr6 27709443 27709502 -121807535 - L1M4 LINE L1 -1909 4237 4178 2 796 180 0 0 0 chr6 27709884 27709904 -121807133 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 796 1112 104 25 30 chr6 27709904 27710096 -121806941 - L1_Mus2 LINE L1 -6 6560 6370 2 796 789 54 0 0 chr6 27711743 27711854 -121805183 + L1Md_F2 LINE L1 6460 6570 -12 2 796 486 0 0 0 chr6 27712729 27712783 -121804254 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 796 324 279 35 18 chr6 27713350 27713463 -121803574 - MamRep1161 DNA TcMar -791 166 52 2 796 364 333 28 0 chr6 27713850 27713958 -121803079 + MLT1A0 LTR MaLR 30 140 -225 2 796 545 129 8 25 chr6 27714023 27714142 -121802895 + GA-rich Low_complexity Low_complexity 3 119 0 2 796 322 288 49 33 chr6 27714181 27714303 -121802734 + MLT1A0 LTR MaLR 158 281 -93 2 796 232 351 95 26 chr6 27714714 27714967 -121802070 - L2a LINE L2 -5 3421 3104 2 796 10791 113 48 8 chr6 27715155 27716599 -121800438 + L1_Mur2 LINE L1 580 2052 -3825 2 796 189 0 0 0 chr6 27716599 27716620 -121800417 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 796 10791 102 45 4 chr6 27716620 27717594 -121799443 + L1_Mur2 LINE L1 2053 3090 -2787 2 796 1359 88 6 6 chr6 27717630 27717808 -121799229 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 -184 2 796 1359 88 6 6 chr6 27717815 27717994 -121799043 + (GGAGAA)n Simple_repeat Simple_repeat 181 364 0 2 796 327 101 49 25 chr6 27717994 27718067 -121798970 + L1_Mur2 LINE L1 3053 3128 -2749 2 796 6369 139 45 12 chr6 27718067 27719139 -121797898 + Lx4A LINE L1 5945 7051 -7 2 796 288 77 0 0 chr6 27719142 27719181 -121797856 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 796 27 81 0 0 chr6 27720680 27720742 -121796295 + AT_rich Low_complexity Low_complexity 1 62 0 2 796 252 0 0 0 chr6 27721013 27721041 -121795996 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 796 575 331 0 0 chr6 27722687 27722820 -121794217 + RSINE1 SINE B4 2 134 -31 2 796 423 0 0 0 chr6 27722827 27722874 -121794163 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 796 29 28 0 0 chr6 27722878 27722914 -121794123 + AT_rich Low_complexity Low_complexity 1 36 0 2 796 2020 153 109 16 chr6 27723601 27723986 -121793051 - MTC LTR MaLR 0 421 1 2 796 319 317 84 0 chr6 27724494 27724636 -121792401 + Lx9 LINE L1 7315 7468 -176 2 796 198 0 0 0 chr6 27724913 27724935 -121792102 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 2 796 539 304 92 39 chr6 27725664 27726076 -121790961 + MLT2B1 LTR ERVL 7 567 0 2 796 257 395 32 43 chr6 27726076 27726259 -121790778 - LTR16A LTR ERVL -259 192 12 3 796 554 312 0 0 chr6 27726791 27726919 -121790118 - ID_B1 SINE B4 -6 218 91 3 796 486 0 0 0 chr6 27728775 27728829 -121788208 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 796 22 35 0 0 chr6 27730322 27730351 -121786686 + AT_rich Low_complexity Low_complexity 1 29 0 3 796 190 0 32 32 chr6 27730776 27730807 -121786230 + (TTATA)n Simple_repeat Simple_repeat 2 32 0 3 796 611 270 29 87 chr6 27731839 27732046 -121784991 + B3A SINE B2 4 198 0 3 796 544 262 95 15 chr6 27732056 27732229 -121784808 + B3A SINE B2 2 190 -5 3 796 444 352 50 36 chr6 27732327 27732548 -121784489 + MLT1A LTR MaLR 7 230 -144 3 796 345 310 8 25 chr6 27732539 27732658 -121784379 + MLT1A LTR MaLR 339 455 -12 3 796 273 313 78 29 chr6 27732684 27732888 -121784149 + HAL1 LINE L1 1534 1747 -760 3 796 447 0 0 0 chr6 27732886 27732938 -121784099 - L1Md_F2 LINE L1 -580 6002 5951 3 796 4779 47 2 3 chr6 27732938 27733517 -121783520 + L1Md_F2 LINE L1 5992 6569 -13 3 796 2532 40 5 2 chr6 27733604 27733932 -121783105 + L1Md_F2 LINE L1 5273 5586 -297 3 796 8092 48 1 1 chr6 27733932 27734928 -121782109 + L1Md_F2 LINE L1 5587 6582 0 3 796 397 329 60 26 chr6 27734948 27735182 -121781855 + HAL1 LINE L1 1980 2221 -286 3 796 180 97 0 0 chr6 27735223 27735254 -121781783 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 3 796 4072 34 0 0 chr6 27736908 27737384 -121779653 - L1Md_T LINE L1 0 6582 6107 3 796 6532 17 0 0 chr6 27737384 27738226 -121778811 + L1Md_A LINE L1 5102 5943 -639 3 796 273 229 0 54 chr6 27738350 27738424 -121778613 + CT-rich Low_complexity Low_complexity 3 72 0 3 796 920 220 68 16 chr6 27738490 27738800 -121778237 + Lx9 LINE L1 7302 7627 -17 3 796 696 266 25 40 chr6 27740113 27740313 -121776724 + B3A SINE B2 1 197 -1 3 796 4159 177 75 67 chr6 27741268 27742138 -121774899 + RMER19B LTR ERVK 1 877 -25 3 796 559 274 47 26 chr6 27742253 27742444 -121774593 + B3A SINE B2 4 198 0 3 796 240 219 9 37 chr6 27742656 27742765 -121774272 + GA-rich Low_complexity Low_complexity 2 107 0 3 796 22 0 0 0 chr6 27742980 27743002 -121774035 + AT_rich Low_complexity Low_complexity 1 22 0 3 796 416 302 66 30 chr6 27743151 27743318 -121773719 + MER3 DNA MER1_type 3 175 -34 3 796 276 321 103 9 chr6 27743324 27743431 -121773606 + B1F1 SINE Alu 24 140 -9 3 796 2395 218 120 44 chr6 27743543 27744402 -121772635 + Lx9 LINE L1 4913 5836 -11 3 796 502 280 35 35 chr6 27744457 27744683 -121772354 + Lx9 LINE L1 7207 7432 -212 3 796 396 0 0 0 chr6 27744717 27744761 -121772276 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 796 243 0 0 0 chr6 27744761 27744787 -121772250 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 796 33 25 0 0 chr6 27744903 27744943 -121772094 + AT_rich Low_complexity Low_complexity 1 40 0 3 796 215 399 32 13 chr6 27745151 27745306 -121771731 + MIR SINE MIR 8 165 -97 3 796 2989 82 28 0 chr6 27745339 27745764 -121771273 - L1_Mus4 LINE L1 -544 6092 5656 3 796 1603 283 48 52 chr6 27745834 27745950 -121771087 + Lx9 LINE L1 6172 6292 -1352 3 796 3263 41 13 0 chr6 27745950 27746341 -121770696 - MTA_Mm LTR MaLR 0 396 1 3 796 1603 283 48 52 chr6 27746341 27746939 -121770098 + Lx9 LINE L1 6293 6883 -761 3 796 249 220 0 33 chr6 27747413 27747474 -121769563 + CT-rich Low_complexity Low_complexity 2 60 0 3 796 2043 119 3 71 chr6 27747625 27747978 -121769059 + ORR1A4 LTR MaLR 1 329 0 3 796 10540 123 27 126 chr6 27747978 27749059 -121767978 + ORR1A4-int LTR MaLR 1 979 -984 3 796 1181 61 0 0 chr6 27749059 27749206 -121767831 + B1_Mm SINE Alu 1 147 0 3 796 10540 123 27 126 chr6 27749206 27750298 -121766739 + ORR1A4-int LTR MaLR 980 1960 -3 3 796 2063 115 0 53 chr6 27750303 27750642 -121766395 + ORR1A4 LTR MaLR 1 321 -8 3 796 26 0 0 0 chr6 27750664 27750690 -121766347 + AT_rich Low_complexity Low_complexity 1 26 0 3 796 462 73 0 24 chr6 27752461 27752545 -121764492 - L1Md_F2 LINE L1 -2 6580 6499 3 796 388 223 0 104 chr6 27754056 27754171 -121762866 + MT2B LTR ERVL 160 262 -339 3 796 951 96 0 0 chr6 27754074 27754209 -121762828 + B1_Mus1 SINE Alu 12 146 -2 3 796 339 78 0 0 chr6 27755661 27755712 -121761325 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 796 747 42 0 0 chr6 27755712 27755806 -121761231 + (GA)n Simple_repeat Simple_repeat 2 96 0 3 796 226 264 115 103 chr6 27756225 27756381 -121760656 + MLT1J LTR MaLR 308 465 -47 3 796 322 318 179 60 chr6 27756788 27757039 -121759998 + MLT1J-int LTR MaLR 684 964 -423 3 796 357 399 6 6 chr6 27757213 27757387 -121759650 + MLT1J-int LTR MaLR 1214 1387 0 3 796 247 379 15 0 chr6 27758258 27758381 -121758656 + MIR SINE MIR 2 129 -147 3 796 417 227 7 83 chr6 27758796 27758940 -121758097 + RLTR12B LTR ERVK 1 133 -395 3 796 527 276 39 63 chr6 27758951 27759206 -121757831 + RLTR15 LTR ERVK 42 290 -69 3 796 194 224 179 0 chr6 27760388 27760455 -121756582 + L2 LINE L2 187 265 -3154 3 796 246 32 0 0 chr6 27760588 27760619 -121756418 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 796 1978 152 10 20 chr6 27761276 27761671 -121755366 + Lx2 LINE L1 5900 6290 -707 3 796 3372 136 7 22 chr6 27761763 27762365 -121754672 + Lx4B LINE L1 5926 6518 -540 3 796 221 306 141 0 chr6 27762924 27763009 -121754028 + MamSINE1 SINE tRNA 15 111 -179 3 796 308 380 53 0 chr6 27763646 27763759 -121753278 - B4A SINE B4 -171 121 3 3 796 306 148 0 0 chr6 27763849 27763903 -121753134 + (A)n Simple_repeat Simple_repeat 1 54 0 3 796 30 0 0 0 chr6 27764567 27764597 -121752440 + AT_rich Low_complexity Low_complexity 1 30 0 3 796 456 304 96 66 chr6 27765504 27765839 -121751198 + L1MC LINE L1 5256 5600 -2282 3 796 520 282 128 69 chr6 27765874 27766209 -121750828 + ORR1E LTR MaLR 4 358 -1 3 796 306 306 88 0 chr6 27766214 27766361 -121750676 + Lx8 LINE L1 6749 6908 -565 3 796 559 352 21 56 chr6 27766361 27766737 -121750300 + Lx8 LINE L1 6859 7221 -252 3 796 719 262 141 33 chr6 27767078 27767291 -121749746 + MTD LTR MaLR 170 405 -14 3 796 379 262 28 18 chr6 27767962 27768071 -121748966 - PB1D10 SINE Alu -2 115 6 3 796 243 348 108 17 chr6 27768094 27768214 -121748823 + MIR3 SINE MIR 75 205 -3 3 796 200 379 8 33 chr6 27768562 27768682 -121748355 - L2c LINE L2 -1 3386 3270 3 796 1212 106 0 0 chr6 27769467 27769646 -121747391 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 3 796 1102 280 85 25 chr6 27769739 27769761 -121747276 + Lx8 LINE L1 6931 6952 -521 3 796 972 25 0 0 chr6 27769761 27769880 -121747157 + (CA)n Simple_repeat Simple_repeat 1 119 0 3 796 1102 280 85 25 chr6 27769880 27770340 -121746697 + Lx8 LINE L1 6953 7442 -31 3 796 182 354 123 23 chr6 27770413 27770543 -121746494 + MIRb SINE MIR 109 251 -17 3 796 3417 20 5 8 chr6 27772315 27772712 -121744325 - MTA_Mm LTR MaLR 0 396 1 3 796 276 309 87 28 chr6 27773193 27773446 -121743591 + L1MC4a LINE L1 6262 6529 -1353 3 796 437 272 158 25 chr6 27773731 27774036 -121743001 + ORR1E LTR MaLR 1 354 -5 3 796 1074 297 56 34 chr6 27774149 27774797 -121742240 + L1MC4a LINE L1 7209 7870 -12 3 796 184 290 0 92 chr6 27775801 27775877 -121741160 - L2 LINE L2 -623 2796 2728 3 796 326 214 99 22 chr6 27776095 27776186 -121740851 + MER53 DNA hAT 89 186 -7 3 796 209 135 19 0 chr6 27777137 27777189 -121739848 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 3 796 718 296 112 0 chr6 27777677 27777927 -121739110 + B4A SINE B4 1 278 -14 3 796 701 201 0 16 chr6 27777965 27778147 -121738890 + (CATA)n Simple_repeat Simple_repeat 1 179 0 3 796 939 22 43 0 chr6 27779181 27779319 -121737718 + (GA)n Simple_repeat Simple_repeat 2 145 0 3 796 696 294 27 40 chr6 27779910 27780133 -121736904 + B4A SINE B4 46 265 -27 3 796 557 120 0 11 chr6 27780136 27780229 -121736808 + (TTTC)n Simple_repeat Simple_repeat 2 93 0 3 796 5542 66 1 12 chr6 27780252 27780975 -121736062 - L1_Mus2 LINE L1 -1 6565 5851 3 796 204 40 0 0 chr6 27781146 27781171 -121735866 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 796 180 152 0 0 chr6 27781449 27781482 -121735555 + A-rich Low_complexity Low_complexity 1 33 0 3 796 260 308 0 37 chr6 27781658 27781739 -121735298 + B4 SINE B4 3 80 -212 3 796 1263 193 5 0 chr6 27783485 27783708 -121733329 - URR1B DNA MER1_type 0 225 2 3 796 629 164 22 15 chr6 27783755 27783891 -121733146 - Lx2B LINE L1 -1 6999 6863 3 796 5412 50 5 1 chr6 27783997 27784671 -121732366 - L1Md_F2 LINE L1 -14 6568 5893 3 796 264 300 44 11 chr6 27784841 27784932 -121732105 - MIRb SINE MIR -147 121 28 3 796 5381 44 5 5 chr6 27786445 27787110 -121729927 - L1Md_F2 LINE L1 0 6582 5918 3 796 350 0 0 0 chr6 27787110 27787150 -121729887 + L1Md_F2 LINE L1 5809 5848 -734 3 99 367 309 92 109 chr6 27787165 27787448 -121729589 - MTEa LTR MaLR -94 285 8 3 797 295 200 200 0 chr6 27787513 27787593 -121729444 - Lx9 LINE L1 -526 7118 7023 3 797 21 0 0 0 chr6 27787722 27787743 -121729294 + AT_rich Low_complexity Low_complexity 1 21 0 3 797 260 111 22 0 chr6 27787850 27787895 -121729142 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 797 202 312 61 30 chr6 27788185 27788284 -121728753 - MIRm SINE MIR -18 258 157 3 797 258 290 0 0 chr6 27788294 27788356 -121728681 - Lx9 LINE L1 -471 7173 7112 3 797 563 216 50 0 chr6 27788357 27788496 -121728541 + Lx9 LINE L1 6862 7007 -637 3 797 3571 144 59 11 chr6 27788503 27789161 -121727876 - RMER6C LTR ERVK 0 690 1 3 797 212 86 29 0 chr6 27789447 27789482 -121727555 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 797 21 0 0 0 chr6 27789589 27789610 -121727427 + AT_rich Low_complexity Low_complexity 1 21 0 3 797 210 143 0 0 chr6 27789772 27789807 -121727230 + (TTGTG)n Simple_repeat Simple_repeat 3 37 0 3 797 200 163 47 0 chr6 27790044 27790087 -121726950 + (CATA)n Simple_repeat Simple_repeat 2 46 0 3 797 262 333 10 20 chr6 27791894 27791911 -121725126 + ID_B1 SINE B4 71 167 -57 3 797 343 230 57 4 chr6 27791911 27791992 -121725045 + B1F SINE Alu 8 90 -60 3 797 307 265 101 81 chr6 27793420 27793568 -121723469 - MER5A DNA MER1_type -9 180 30 3 797 1198 312 14 6 chr6 27793659 27794020 -121723017 - MTEa LTR MaLR -15 364 1 3 797 366 42 0 0 chr6 27794135 27794183 -121722854 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 4 797 223 186 0 0 chr6 27794234 27794277 -121722760 + T-rich Low_complexity Low_complexity 1 43 0 4 797 5593 58 3 1 chr6 27794306 27795009 -121722028 - L1_Mus2 LINE L1 -177 6389 5686 4 797 974 231 0 48 chr6 27796504 27796731 -121720306 + Lx6 LINE L1 7241 7456 -4 4 797 193 340 124 28 chr6 27797095 27797313 -121719724 + L3 LINE CR1 3452 3690 -799 4 797 518 343 36 36 chr6 27797417 27797780 -121719257 + L1MB5 LINE L1 5705 6086 -98 4 797 700 158 0 0 chr6 27797826 27797946 -121719091 - Lx2 LINE L1 -786 6211 6092 4 797 5336 109 1 49 chr6 27797946 27798817 -121718220 + Lx2 LINE L1 6168 6996 -1 4 797 227 196 0 21 chr6 27799020 27799067 -121717970 + GA-rich Low_complexity Low_complexity 3 48 0 4 797 200 344 11 53 chr6 27799516 27799611 -121717426 + L3 LINE CR1 4382 4472 -17 4 797 362 285 24 31 chr6 27800716 27800843 -121716194 - MER3 DNA MER1_type -5 204 79 4 797 260 91 40 111 chr6 27801393 27801492 -121715545 + (TTATA)n Simple_repeat Simple_repeat 4 95 0 4 797 201 94 0 0 chr6 27802665 27802697 -121714340 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 4 797 33 73 0 0 chr6 27803142 27803210 -121713827 + AT_rich Low_complexity Low_complexity 1 68 0 4 797 21 0 0 0 chr6 27803235 27803256 -121713781 + AT_rich Low_complexity Low_complexity 1 21 0 4 797 24 0 0 0 chr6 27803439 27803463 -121713574 + AT_rich Low_complexity Low_complexity 1 24 0 4 797 647 324 28 28 chr6 27803656 27803907 -121713130 - MIR SINE MIR -5 257 7 4 797 1213 303 48 17 chr6 27804071 27804616 -121712421 + Lx8 LINE L1 5430 5996 -1477 4 797 1481 184 52 20 chr6 27804714 27805019 -121712018 + RMER12 LTR ERVK 1 315 -1007 4 797 7649 69 2 8 chr6 27805019 27806059 -121710978 + L1_Mus1 LINE L1 5534 6567 0 4 797 3073 216 75 110 chr6 27806077 27807139 -121709898 + RMER12 LTR ERVK 298 1322 0 4 797 288 70 0 0 chr6 27807559 27807602 -121709435 + (TTAA)n Simple_repeat Simple_repeat 4 46 0 4 797 182 232 33 82 chr6 27807917 27807978 -121709059 - L2b LINE L2 -5 3370 3313 4 797 215 222 0 0 chr6 27809001 27809046 -121707991 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 4 797 303 28 0 0 chr6 27809899 27809935 -121707102 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 797 21 36 0 0 chr6 27810339 27810367 -121706670 + AT_rich Low_complexity Low_complexity 1 28 0 4 797 635 264 32 13 chr6 27810768 27810925 -121706112 + RSINE1 SINE B4 6 165 0 4 797 438 306 132 75 chr6 27811200 27811532 -121705505 + ORR1E LTR MaLR 4 354 -5 4 797 385 296 27 23 chr6 27811626 27811781 -121705256 + MLT1B LTR MaLR 237 378 -12 4 797 504 250 147 18 chr6 27811910 27812010 -121705027 + L1MB4 LINE L1 5652 5767 -413 4 797 5190 60 5 1 chr6 27812010 27812673 -121704364 + L1Md_F2 LINE L1 5918 6582 0 4 797 504 250 147 18 chr6 27812673 27812796 -121704241 + L1MB4 LINE L1 5768 5903 -277 4 797 255 232 19 75 chr6 27812796 27812903 -121704134 + L1MB4 LINE L1 6047 6147 -33 4 797 429 319 84 27 chr6 27812981 27813348 -121703689 + L1ME2z LINE L1 4664 5051 -1095 4 797 886 271 127 39 chr6 27813415 27814246 -121702791 + L1ME2z LINE L1 5244 6176 -3 4 797 432 0 0 0 chr6 27814633 27814681 -121702356 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 4 797 4791 212 112 13 chr6 27814752 27815963 -121701074 + Lx9 LINE L1 6306 7636 -8 4 797 941 101 149 12 chr6 27816476 27816637 -121700400 - B2_Mm2 SINE B2 -11 184 2 4 797 845 37 0 0 chr6 27817271 27817378 -121699659 - B1_Mm SINE Alu 0 147 41 4 797 369 0 0 0 chr6 27817466 27817507 -121699530 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 797 594 0 0 0 chr6 27817507 27817572 -121699465 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 797 225 333 114 74 chr6 27817576 27817589 -121699448 - FAM SINE Alu -20 291 142 4 797 535 259 46 0 chr6 27817589 27817720 -121699317 - ID_B1 SINE B4 0 224 88 4 797 587 301 55 51 chr6 27818013 27818286 -121698751 + B4A SINE B4 1 274 -18 4 797 224 218 0 35 chr6 27818298 27818355 -121698682 + (CATA)n Simple_repeat Simple_repeat 3 57 0 4 797 378 308 33 65 chr6 27818576 27818729 -121698308 - RSINE1 SINE B4 -15 150 3 4 797 414 0 0 0 chr6 27819482 27819528 -121697509 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 797 1043 265 96 121 chr6 27819582 27819969 -121697068 - MTE2b LTR MaLR 0 379 3 4 797 1905 221 11 199 chr6 27820098 27820851 -121696186 + RMER19C LTR ERVK 1 611 0 4 797 1091 324 98 70 chr6 27822120 27823136 -121693901 + L2a LINE L2 1376 2420 -999 4 797 25509 156 10 10 chr6 27823136 27829049 -121687988 + Lx LINE L1 394 6306 -348 4 797 3042 64 8 8 chr6 27829049 27829445 -121687592 - MTA_Mm LTR MaLR 0 396 1 4 797 6815 118 25 13 chr6 27829445 27829788 -121687249 + Lx LINE L1 6307 6650 -4 4 797 525 328 60 87 chr6 27829955 27830322 -121686715 + ORR1E LTR MaLR 1 357 -2 4 797 207 390 109 14 chr6 27830611 27830749 -121686288 + L2a LINE L2 2911 3061 -314 4 797 213 335 107 58 chr6 27830852 27831058 -121685979 + L2a LINE L2 3211 3426 0 4 797 347 319 87 87 chr6 27831650 27831997 -121685040 + MLT2B4 LTR ERVL 63 403 -11 4 797 321 336 0 9 chr6 27832165 27832279 -121684758 - Tigger5 DNA MER2_type -2 2404 2292 4 797 23 0 0 0 chr6 27832537 27832560 -121684477 + AT_rich Low_complexity Low_complexity 1 23 0 4 797 21 0 0 0 chr6 27834493 27834514 -121682523 + AT_rich Low_complexity Low_complexity 1 21 0 4 797 255 152 0 0 chr6 27834572 27834618 -121682419 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 797 300 169 53 66 chr6 27834623 27834699 -121682338 - B4A SINE B4 -1 291 217 4 797 667 261 100 14 chr6 27834785 27834995 -121682042 - B4 SINE B4 -64 228 1 4 797 467 319 81 44 chr6 27835901 27836222 -121680815 + MER113 DNA MER1_type 160 492 -29 4 797 511 227 95 25 chr6 27836248 27836406 -121680631 + ORR1D2 LTR MaLR 3 171 -199 4 797 351 305 0 19 chr6 27836419 27836526 -121680511 + CT-rich Low_complexity Low_complexity 1 105 0 4 797 345 189 0 0 chr6 27836558 27836653 -121680384 + CT-rich Low_complexity Low_complexity 2 96 0 4 797 933 211 43 9 chr6 27836653 27836863 -121680174 + ORR1D2 LTR MaLR 150 366 -4 4 797 1138 138 0 22 chr6 27836970 27836989 -121680048 - B2_Mm2 SINE B2 -20 175 160 4 797 351 0 0 0 chr6 27836989 27837028 -121680009 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4 797 1138 138 0 22 chr6 27837028 27837186 -121679851 - B2_Mm2 SINE B2 -36 159 2 4 797 730 266 37 33 chr6 27837279 27837493 -121679544 - B4A SINE B4 0 292 78 4 797 313 283 0 11 chr6 27837674 27837767 -121679270 - L1MD2 LINE L1 -443 5916 5825 4 797 1633 344 46 27 chr6 27837798 27838646 -121678391 - Lx8 LINE L1 -2 7471 6608 4 797 933 307 19 23 chr6 27838648 27838958 -121678079 - RMER15-int LTR ERVL -515 4484 4176 4 797 241 208 26 47 chr6 27839034 27839163 -121677874 + A-rich Low_complexity Low_complexity 1 126 0 4 797 226 279 0 0 chr6 27839168 27839211 -121677826 + Lx9 LINE L1 5848 5890 -1754 4 797 293 152 30 0 chr6 27839407 27839473 -121677564 + GA-rich Low_complexity Low_complexity 4 71 0 4 797 238 392 10 0 chr6 27839489 27839586 -121677451 - B4 SINE B4 -194 98 1 4 797 230 252 48 24 chr6 27839896 27839914 -121677123 + ORR1B1-int LTR MaLR 626 646 -863 4 797 1116 74 0 0 chr6 27839914 27840062 -121676975 + B1_Mus1 SINE Alu 1 148 0 4 797 198 0 0 0 chr6 27840062 27840084 -121676953 + (A)n Simple_repeat Simple_repeat 1 22 0 4 797 424 144 35 18 chr6 27844065 27844178 -121672859 + G-rich Low_complexity Low_complexity 2 116 0 4 797 396 0 0 0 chr6 27844707 27844751 -121672286 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 797 527 141 66 8 chr6 27844848 27844970 -121672067 - Lx9 LINE L1 0 7644 7516 4 797 396 0 0 0 chr6 27844970 27845014 -121672023 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 797 1443 211 36 0 chr6 27845015 27845323 -121671714 - Lx9 LINE L1 -179 7465 7147 4 797 736 255 92 29 chr6 27845323 27845529 -121671508 - B4 SINE B4 -70 222 4 4 797 691 79 29 19 chr6 27845973 27846076 -121670961 - B1_Mm SINE Alu -41 106 3 4 797 377 210 54 99 chr6 27845977 27846088 -121670949 - MT2B LTR ERVL -344 257 152 4 797 471 48 0 0 chr6 27846386 27846448 -121670589 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 4 797 181 356 141 18 chr6 27847590 27847810 -121669227 - L2 LINE L2 -830 2589 2343 4 797 374 284 34 25 chr6 27848044 27848163 -121668874 - ORR1E LTR MaLR -69 290 171 4 797 445 194 244 12 chr6 27848235 27848407 -121668630 + Lx6 LINE L1 7249 7460 0 4 797 258 349 66 66 chr6 27848728 27848955 -121668082 + MLT1J LTR MaLR 275 501 -11 4 797 225 345 56 22 chr6 27849656 27849745 -121667292 + MIRb SINE MIR 36 127 -141 4 797 188 286 0 20 chr6 27850311 27850361 -121666676 + L4 LINE RTE 623 671 -1358 4 797 315 0 0 0 chr6 27851138 27851173 -121665864 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 797 333 352 9 0 chr6 27851255 27851363 -121665674 + PB1D10 SINE Alu 1 109 -8 4 797 30 27 0 0 chr6 27851906 27851943 -121665094 + AT_rich Low_complexity Low_complexity 1 37 0 4 797 2016 73 99 0 chr6 27851957 27852229 -121664808 - L1_Mus1 LINE L1 0 6567 6269 4 797 451 268 81 119 chr6 27852992 27853198 -121663839 + ID_B1 SINE B4 39 230 -62 4 797 24 53 0 0 chr6 27853459 27853497 -121663540 + AT_rich Low_complexity Low_complexity 1 38 0 4 797 221 228 48 60 chr6 27854368 27854452 -121662585 + MIRb SINE MIR 176 258 -10 4 797 309 327 92 22 chr6 27854626 27854854 -121662183 + L2 LINE L2 2734 2977 -442 4 797 228 122 0 0 chr6 27855529 27855570 -121661467 + (T)n Simple_repeat Simple_repeat 1 41 0 4 797 425 191 26 71 chr6 27856034 27856147 -121660890 - L1MC1 LINE L1 -6 6327 6220 4 797 2649 89 0 52 chr6 27856319 27856721 -121660316 - L1_Mus2 LINE L1 0 6566 6186 4 797 2132 212 79 61 chr6 27857095 27857227 -121659810 - Lx7 LINE L1 0 7696 7541 4 797 351 0 0 0 chr6 27857227 27857266 -121659771 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 797 2132 212 79 61 chr6 27857266 27857802 -121659235 - Lx7 LINE L1 -156 7540 7017 4 797 1251 163 18 0 chr6 27858531 27858752 -121658285 + URR1B DNA MER1_type 1 225 0 4 797 34 0 0 0 chr6 27859018 27859052 -121657985 + AT_rich Low_complexity Low_complexity 1 34 0 4 797 2402 106 36 21 chr6 27859471 27859856 -121657181 - Lx LINE L1 -2 6652 6262 4 797 405 58 0 0 chr6 27865606 27865658 -121651379 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 797 369 0 0 0 chr6 27866303 27866344 -121650693 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 797 732 334 45 10 chr6 27866350 27866664 -121650373 - Lx9 LINE L1 -196 7448 7124 5 797 47 44 0 0 chr6 27867429 27867497 -121649540 + AT_rich Low_complexity Low_complexity 1 68 0 5 797 288 283 60 74 chr6 27867499 27867648 -121649389 + MLT1B LTR MaLR 1 147 -243 5 797 305 355 50 15 chr6 27867684 27867979 -121649058 + MLT1B LTR MaLR 152 461 -6 5 797 302 378 125 46 chr6 27867984 27868353 -121648684 - LTR16B2 LTR ERVL -62 400 3 5 797 1622 118 49 18 chr6 27868706 27869039 -121647998 + ORR1A1 LTR MaLR 2 345 -1 5 797 1570 116 58 7 chr6 27869044 27869322 -121647715 - MTA_Mm LTR MaLR 0 396 105 5 797 1284 162 36 28 chr6 27869232 27869480 -121647557 + MTD LTR MaLR 168 417 -2 5 797 180 0 0 0 chr6 27869645 27869665 -121647372 + (ATG)n Simple_repeat Simple_repeat 1 20 0 5 797 240 208 37 19 chr6 27869737 27869791 -121647246 - PB1 SINE Alu 0 127 73 5 797 230 372 95 37 chr6 27870438 27870734 -121646303 - L2c LINE L2 -18 3369 3057 5 797 203 171 26 26 chr6 27871002 27871080 -121645957 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 797 438 217 18 0 chr6 27871129 27871295 -121645742 + (TG)n Simple_repeat Simple_repeat 2 170 0 5 797 562 298 19 6 chr6 27871443 27871605 -121645432 - B4A SINE B4 -128 164 1 5 797 2522 36 0 13 chr6 27872466 27872874 -121644163 + L1Md_F3 LINE L1 6255 6584 0 5 797 350 147 81 19 chr6 27873096 27873256 -121643781 + (TA)n Simple_repeat Simple_repeat 1 170 0 5 797 374 188 16 81 chr6 27873174 27873359 -121643678 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 5 797 328 267 28 73 chr6 27873374 27873483 -121643554 + PB1D7 SINE Alu 10 113 -7 5 797 251 277 35 26 chr6 27873601 27873716 -121643321 - L1MA5 LINE L1 -12 6288 6173 5 797 224 203 40 26 chr6 27874070 27874146 -121642891 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 797 1189 11 22 22 chr6 27874146 27874325 -121642712 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 797 204 63 111 0 chr6 27874797 27874860 -121642177 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 5 797 21 36 0 0 chr6 27874953 27874981 -121642056 + AT_rich Low_complexity Low_complexity 1 28 0 5 797 323 308 64 96 chr6 27875190 27875441 -121641596 - L1M5 LINE L1 -1438 4708 4466 5 797 202 279 14 68 chr6 27875689 27875762 -121641275 + MIR SINE MIR 151 219 -43 5 797 347 323 109 23 chr6 27875832 27876136 -121640901 - L1M5 LINE L1 -1862 4284 3955 5 797 439 291 31 12 chr6 27876307 27876467 -121640570 + MER58A DNA MER1_type 61 223 -1 5 797 272 311 7 29 chr6 27876565 27876701 -121640336 + CT-rich Low_complexity Low_complexity 4 136 0 5 797 546 16 0 0 chr6 27876930 27876993 -121640044 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 5 797 480 348 21 14 chr6 27876996 27877139 -121639898 + RSINE1 SINE B4 2 145 -20 5 797 206 192 19 0 chr6 27879126 27879178 -121637859 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 797 761 168 6 16 chr6 27879189 27879371 -121637666 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 797 311 318 45 9 chr6 27879407 27879518 -121637519 + MER5A DNA MER1_type 8 122 -67 5 797 1938 101 54 25 chr6 27879810 27880124 -121636913 - Lx LINE L1 -6 6648 6326 5 797 192 276 138 0 chr6 27880690 27880748 -121636289 + MIR3 SINE MIR 110 175 -33 5 797 269 210 24 36 chr6 27881639 27881723 -121635314 + Lx9 LINE L1 7556 7638 -6 5 797 2909 61 0 8 chr6 27882970 27883350 -121633687 + L1Md_F2 LINE L1 6190 6566 -16 5 797 281 333 69 19 chr6 27883420 27883579 -121633458 + L3 LINE CR1 3574 3740 -749 5 797 274 305 68 41 chr6 27884361 27884508 -121632529 + MamRep434 DNA TcMar 5 155 -271 5 797 231 365 37 9 chr6 27885009 27885117 -121631920 + MER45R DNA Tip100 16 126 -1455 5 797 25 75 0 0 chr6 27888372 27888425 -121628612 + AT_rich Low_complexity Low_complexity 1 53 0 5 797 441 36 0 0 chr6 27888506 27888561 -121628476 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 797 2285 291 53 23 chr6 27889362 27889467 -121627570 - Lx8 LINE L1 -17 7456 7355 5 797 1292 43 0 0 chr6 27889467 27889631 -121627406 + L1Md_A LINE L1 6419 6582 0 5 797 2285 291 53 23 chr6 27889631 27890481 -121626556 - Lx8 LINE L1 -119 7354 6473 5 797 549 0 0 0 chr6 27890650 27890711 -121626326 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 797 455 235 0 20 chr6 27890758 27890858 -121626179 - PB1D10 SINE Alu -2 115 18 5 797 313 344 11 0 chr6 27890780 27890873 -121626164 - ID_B1 SINE B4 -48 176 83 5 797 204 267 0 0 chr6 27891926 27891971 -121625066 + GA-rich Low_complexity Low_complexity 3 47 0 5 797 421 292 117 20 chr6 27892721 27892917 -121624120 - MIRc SINE MIR -17 251 37 5 797 215 125 25 0 chr6 27893431 27893471 -121623566 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 5 797 245 146 21 0 chr6 27893468 27893516 -121623521 + CT-rich Low_complexity Low_complexity 2 50 0 5 797 246 371 22 0 chr6 27894270 27894359 -121622678 - MER81 DNA AcHobo 0 114 24 5 797 543 43 0 0 chr6 27894868 27894938 -121622099 + (TTGG)n Simple_repeat Simple_repeat 2 71 0 5 797 194 0 0 37 chr6 27894938 27894965 -121622072 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 5 797 180 97 0 0 chr6 27894981 27895012 -121622025 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 5 797 647 102 203 0 chr6 27895012 27895037 -121622000 - B1_Mus1 SINE Alu -6 142 107 5 797 7039 61 16 0 chr6 27895046 27895925 -121621112 + RLTR13B1 LTR ERVK 1 893 0 5 797 647 102 203 0 chr6 27895925 27896008 -121621029 - B1_Mus1 SINE Alu -42 106 3 5 797 431 246 22 50 chr6 27896008 27896098 -121620939 - ID_B1 SINE B4 -125 167 1 5 797 348 165 144 32 chr6 27897091 27897216 -121619821 + Lx9 LINE L1 7505 7643 -1 5 797 21 0 0 0 chr6 27897220 27897241 -121619796 + AT_rich Low_complexity Low_complexity 1 21 0 5 797 227 344 94 47 chr6 27897434 27897562 -121619475 - MIR SINE MIR -22 246 113 5 797 855 28 0 0 chr6 27897738 27897844 -121619193 + (TG)n Simple_repeat Simple_repeat 2 107 0 5 797 466 194 128 9 chr6 27897846 27897955 -121619082 - B4A SINE B4 -41 251 130 5 797 536 286 29 111 chr6 27899163 27899407 -121617630 + B4 SINE B4 1 224 -68 5 797 447 19 0 0 chr6 27899434 27899486 -121617551 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 797 429 20 0 0 chr6 27899486 27899535 -121617502 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 797 216 177 16 31 chr6 27902780 27902844 -121614193 + T-rich Low_complexity Low_complexity 4 66 0 5 797 3305 262 105 33 chr6 27904499 27904973 -121612064 - Lx8 LINE L1 -10 7463 6958 5 797 468 0 0 0 chr6 27904973 27905025 -121612012 + (CATA)n Simple_repeat Simple_repeat 2 53 0 5 797 3305 262 105 33 chr6 27905025 27905717 -121611320 - Lx8 LINE L1 -516 6957 6215 5 797 482 308 48 58 chr6 27906115 27906322 -121610715 + MER20 DNA MER1_type 8 212 -7 5 797 29 0 0 0 chr6 27907177 27907206 -121609831 + AT_rich Low_complexity Low_complexity 1 29 0 5 797 22 80 0 0 chr6 27907217 27907267 -121609770 + AT_rich Low_complexity Low_complexity 1 50 0 5 797 255 293 118 15 chr6 27907421 27907556 -121609481 + MLT1L LTR MaLR 24 172 -438 5 797 470 317 18 6 chr6 27907579 27907747 -121609290 - MER2 DNA MER2_type -49 296 127 5 797 301 326 101 40 chr6 27908044 27908117 -121608920 + MLT1D LTR MaLR 9 81 -424 5 797 414 0 0 0 chr6 27908117 27908163 -121608874 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 5 797 301 326 101 40 chr6 27908163 27908287 -121608750 + MLT1D LTR MaLR 82 217 -288 5 797 460 286 80 40 chr6 27908317 27908492 -121608545 + MLT1D LTR MaLR 308 489 -16 5 797 317 310 53 0 chr6 27908566 27908679 -121608358 + MLT1L LTR MaLR 147 265 -345 5 797 449 110 14 0 chr6 27908749 27908822 -121608215 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 797 248 368 83 54 chr6 27908837 27909041 -121607996 + MLT1L LTR MaLR 309 518 -92 5 797 247 260 40 40 chr6 27909770 27909870 -121607167 - L2 LINE L2 -1037 2382 2283 5 797 525 303 25 31 chr6 27910412 27910572 -121606465 - RSINE1 SINE B4 -4 161 3 5 797 458 299 90 19 chr6 27910766 27910977 -121606060 - MLT2B4 LTR ERVL -327 229 4 5 797 362 356 71 30 chr6 27911061 27911400 -121605637 + L2b LINE L2 2514 2866 -553 5 797 198 340 124 49 chr6 27912981 27913092 -121603945 + L2b LINE L2 3131 3373 -2 5 797 210 377 43 9 chr6 27913092 27913207 -121603830 + MIRm SINE MIR 158 276 0 5 797 339 292 53 9 chr6 27913615 27913729 -121603308 + LTR78 LTR ERV1 1005 1123 -181 5 797 782 228 12 19 chr6 27913962 27914154 -121602883 + B3 SINE B2 1 190 -3 5 797 382 278 53 6 chr6 27914157 27914327 -121602710 + L1MB1 LINE L1 5964 6141 -27 5 797 696 111 0 0 chr6 27914342 27914450 -121602587 + (CA)n Simple_repeat Simple_repeat 1 108 0 5 797 250 219 0 30 chr6 27914461 27914527 -121602510 + A-rich Low_complexity Low_complexity 4 67 0 5 797 254 313 109 34 chr6 27915314 27915433 -121601604 - L2c LINE L2 -5 3382 3255 5 797 271 352 83 44 chr6 27915455 27915684 -121601353 + MLT1K LTR MaLR 8 245 -350 5 797 270 0 0 0 chr6 27915756 27915786 -121601251 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 797 366 23 0 0 chr6 27915786 27915828 -121601209 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 797 1604 182 34 6 chr6 27915900 27916221 -121600816 + Lx5 LINE L1 6643 6972 -78 5 797 607 317 105 16 chr6 27916404 27916720 -121600317 + MLT1C LTR MaLR 124 463 -4 5 798 468 392 61 15 chr6 27919561 27919887 -121597150 + MER92A LTR ERV1 69 409 -3 5 798 843 345 23 76 chr6 27919908 27920212 -121596825 + B4 SINE B4 5 292 0 5 798 217 150 0 24 chr6 27920213 27920254 -121596783 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 798 234 314 75 47 chr6 27920765 27920872 -121596165 + MIRm SINE MIR 158 267 -9 5 798 456 284 97 95 chr6 27922035 27922417 -121594620 + MLT1C LTR MaLR 1 390 0 5 798 216 135 0 0 chr6 27923452 27923489 -121593548 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 5 798 264 315 133 11 chr6 27923888 27923978 -121593059 + B1F1 SINE Alu 2 102 -47 5 798 180 351 234 0 chr6 27924065 27924176 -121592861 - MIR SINE MIR -113 149 13 5 798 187 395 0 12 chr6 27924403 27924485 -121592552 - L2b LINE L2 -6 3369 3289 5 798 432 37 0 0 chr6 27924637 27924691 -121592346 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 6 798 390 42 0 0 chr6 27925853 27925901 -121591136 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 798 911 284 96 20 chr6 27927186 27927582 -121589455 + MLT1C LTR MaLR 34 459 -8 6 798 28 0 0 0 chr6 27930378 27930406 -121586631 + AT_rich Low_complexity Low_complexity 1 28 0 6 798 183 146 0 0 chr6 27931797 27931838 -121585199 + (TTGG)n Simple_repeat Simple_repeat 1 41 0 6 798 381 157 14 54 chr6 27931884 27931958 -121585079 - B1_Mur1 SINE Alu 0 149 79 6 798 207 250 0 0 chr6 27932687 27932747 -121584290 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 798 250 329 99 14 chr6 27934469 27934611 -121582426 + LTR33 LTR ERVL 361 514 -1 6 798 189 0 0 0 chr6 27935560 27935581 -121581456 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 798 873 96 0 0 chr6 27935581 27935705 -121581332 + (TG)n Simple_repeat Simple_repeat 2 126 0 6 798 311 342 135 45 chr6 27935945 27936190 -121580847 + L2 LINE L2 2683 2949 -470 6 798 450 352 56 38 chr6 27936576 27936916 -121580121 - Charlie19a DNA Charlie -25 361 16 6 798 445 257 0 79 chr6 27939557 27939709 -121577328 - RMER1C Other Other -1 1341 1202 6 798 523 233 31 51 chr6 27939910 27940159 -121576878 - L1MA6 LINE L1 0 6300 6060 6 798 21 0 0 0 chr6 27940288 27940309 -121576728 + AT_rich Low_complexity Low_complexity 1 21 0 6 798 231 36 0 0 chr6 27940798 27940826 -121576211 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 798 369 0 0 0 chr6 27942270 27942311 -121574726 + (T)n Simple_repeat Simple_repeat 1 41 0 6 798 560 224 42 57 chr6 27942390 27942604 -121574433 + ORR1E LTR MaLR 172 374 0 6 798 25 75 0 0 chr6 27943491 27943544 -121573493 + AT_rich Low_complexity Low_complexity 1 53 0 6 798 584 222 0 56 chr6 27943673 27943816 -121573221 + MER5A1 DNA MER1_type 30 164 -2 6 798 22 35 0 0 chr6 27943824 27943853 -121573184 + AT_rich Low_complexity Low_complexity 1 29 0 6 798 210 191 0 0 chr6 27944041 27944083 -121572954 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 798 216 86 0 0 chr6 27944083 27944118 -121572919 + (TAGG)n Simple_repeat Simple_repeat 1 35 0 6 798 7366 102 40 6 chr6 27944118 27945197 -121571840 - Lx3A LINE L1 -16 6965 5850 6 798 251 190 17 0 chr6 27946476 27946534 -121570503 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 6 798 402 327 126 28 chr6 27946602 27946816 -121570221 + B4 SINE B4 2 236 -56 6 798 348 256 0 12 chr6 27947084 27947167 -121569870 + ID4 SINE ID 2 83 0 6 798 363 212 0 0 chr6 27947357 27947503 -121569534 + C-rich Low_complexity Low_complexity 4 149 0 6 798 321 96 19 0 chr6 27948085 27948137 -121568900 + B1_Mur4 SINE Alu 98 150 0 6 798 331 163 11 23 chr6 27948149 27948190 -121568847 + polypurine Low_complexity Low_complexity 2 42 0 6 798 1055 139 0 6 chr6 27948190 27948371 -121568666 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 798 2862 40 0 28 chr6 27948373 27948729 -121568308 + ORR1A1 LTR MaLR 1 346 0 6 798 331 163 11 23 chr6 27948729 27948772 -121568265 + polypurine Low_complexity Low_complexity 43 85 0 6 798 328 332 126 53 chr6 27948811 27949387 -121567650 + L2 LINE L2 1827 2444 -975 6 798 331 366 28 34 chr6 27949644 27949822 -121567215 + L1ME2 LINE L1 3968 4144 -2002 6 798 219 311 22 0 chr6 27949838 27949928 -121567109 + (TAGA)n Simple_repeat Simple_repeat 4 95 0 6 798 934 183 75 32 chr6 27950142 27950328 -121566709 + ORR1C2 LTR MaLR 1 194 -190 6 798 239 133 22 0 chr6 27950328 27950373 -121566664 + CT-rich Low_complexity Low_complexity 2 47 0 6 798 1167 171 1 16 chr6 27950376 27950612 -121566425 + ORR1C2 LTR MaLR 133 380 -4 6 798 396 310 19 45 chr6 27950645 27950959 -121566078 + L1ME2 LINE L1 4479 4784 -1362 6 798 446 321 81 4 chr6 27951094 27951470 -121565567 - L1_Mur3 LINE L1 -1383 4760 4358 6 798 1791 316 43 29 chr6 27951478 27952647 -121564390 + L1Md_T LINE L1 4690 5914 -1094 6 798 546 108 0 0 chr6 27952647 27952730 -121564307 + (TA)n Simple_repeat Simple_repeat 1 83 0 6 798 445 325 47 36 chr6 27952730 27952775 -121564262 + L1Md_T LINE L1 5915 5959 -1049 6 798 297 0 0 0 chr6 27952838 27952871 -121564166 + (TTA)n Simple_repeat Simple_repeat 2 34 0 6 798 1167 162 15 0 chr6 27952871 27953069 -121563968 - Lx4A LINE L1 -5 7053 6853 6 798 1522 165 59 7 chr6 27953064 27953351 -121563686 + Lx LINE L1 6346 6647 -7 6 798 2024 110 55 12 chr6 27953364 27953694 -121563343 - Lx4A LINE L1 -214 6844 6501 6 798 473 125 0 0 chr6 27953691 27953771 -121563266 - L1_Mur2 LINE L1 -6446 266 187 6 798 356 336 158 7 chr6 27953786 27954059 -121562978 + L1ME2 LINE L1 4880 5193 -953 6 798 997 284 110 14 chr6 27954125 27954233 -121562804 - Lx8 LINE L1 -1 7472 7337 6 798 315 0 0 0 chr6 27954233 27954268 -121562769 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6 798 997 284 110 14 chr6 27954268 27954651 -121562386 - Lx8 LINE L1 -137 7336 6935 6 798 559 256 83 27 chr6 27954661 27954962 -121562075 + L1ME2 LINE L1 5271 5588 -576 6 798 312 312 98 55 chr6 27955125 27955308 -121561729 + L1ME2 LINE L1 5707 5897 -267 6 798 410 110 27 0 chr6 27955407 27955480 -121561557 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 6 798 340 354 113 67 chr6 27956001 27956452 -121560585 + L2c LINE L2 2916 3387 0 6 798 2153 132 42 5 chr6 27957770 27958173 -121558864 - Lx4B LINE L1 -816 6242 5825 6 798 2669 211 36 24 chr6 27958172 27958843 -121558194 + Lx2B LINE L1 6268 7041 -17 6 798 417 123 0 0 chr6 27958845 27958910 -121558127 + (TTAG)n Simple_repeat Simple_repeat 3 67 0 6 798 685 320 126 39 chr6 27959021 27959060 -121557977 - LTR33A_ LTR ERVL -26 505 469 6 798 286 314 19 19 chr6 27959060 27959167 -121557870 + PB1D10 SINE Alu 2 108 -9 6 798 685 320 126 39 chr6 27959167 27959589 -121557448 - LTR33A_ LTR ERVL -63 468 4 6 798 409 268 170 0 chr6 27959661 27959814 -121557223 + ID_B1 SINE B4 3 181 -43 6 798 549 292 59 72 chr6 27959827 27960063 -121556974 + B4 SINE B4 2 234 -58 6 798 296 24 24 0 chr6 27960267 27960308 -121556729 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 798 1525 98 60 12 chr6 27960345 27960429 -121556608 - L1_Mus3 LINE L1 -5 6633 6536 6 798 186 43 0 0 chr6 27960429 27960452 -121556585 + (CCCCCT)n Simple_repeat Simple_repeat 1 23 0 6 798 1525 98 60 12 chr6 27960452 27960615 -121556422 - L1_Mus3 LINE L1 -103 6535 6374 6 798 447 188 27 0 chr6 27960615 27960727 -121556310 + CT-rich Low_complexity Low_complexity 2 116 0 6 798 246 62 0 0 chr6 27960729 27960761 -121556276 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 798 2939 40 5 29 chr6 27960775 27960974 -121556063 - L1Md_F3 LINE L1 0 6584 6393 6 798 346 50 50 0 chr6 27960974 27961034 -121556003 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 6 798 1220 14 0 0 chr6 27961034 27961172 -121555865 - B1_Mm SINE Alu -9 138 1 6 798 2939 40 5 29 chr6 27961172 27961354 -121555683 - L1Md_F3 LINE L1 -192 6392 6212 6 798 629 244 60 69 chr6 27961354 27961570 -121555467 - B4A SINE B4 -78 214 1 6 798 248 239 0 0 chr6 27961725 27961792 -121555245 + T-rich Low_complexity Low_complexity 1 67 0 6 798 265 324 28 0 chr6 27962270 27962378 -121554659 + L2 LINE L2 2344 2454 -965 6 798 2223 244 67 21 chr6 27962400 27962607 -121554430 - Lx8 LINE L1 -409 7064 6857 6 798 270 0 0 0 chr6 27962607 27962637 -121554400 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 798 2223 244 67 21 chr6 27962637 27963082 -121553955 - Lx8 LINE L1 -617 6856 6382 6 798 378 348 163 11 chr6 27963100 27963382 -121553655 + L1MC5 LINE L1 6713 7037 -1005 6 798 385 256 54 0 chr6 27963393 27963522 -121553515 + L1MC5 LINE L1 7297 7432 -529 6 798 201 74 0 0 chr6 27963742 27963769 -121553268 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 798 753 170 29 15 chr6 27963918 27964055 -121552982 - B1_Mur4 SINE Alu -7 143 5 6 798 248 341 151 59 chr6 27966939 27967244 -121549793 - L2b LINE L2 -1 3374 3042 6 798 25 31 0 0 chr6 27968668 27968700 -121548337 + AT_rich Low_complexity Low_complexity 1 32 0 6 798 684 237 7 3 chr6 27968810 27968954 -121548083 - B1_Mur1 SINE Alu 0 149 2 6 798 199 178 43 22 chr6 27969346 27969392 -121547645 + L2 LINE L2 2796 2842 -577 6 798 260 53 0 26 chr6 27970921 27970960 -121546077 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 798 29 0 0 0 chr6 27970963 27970992 -121546045 + AT_rich Low_complexity Low_complexity 1 29 0 6 798 276 77 0 0 chr6 27971317 27971356 -121545681 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 798 3381 23 18 0 chr6 27973081 27973470 -121543567 + MTA_Mm LTR MaLR 1 396 0 6 798 1689 172 60 4 chr6 27973575 27973892 -121543145 - MTC LTR MaLR -21 400 84 6 798 4880 43 0 2 chr6 27973908 27974493 -121542544 - L1_Mus1 LINE L1 0 6567 5984 6 798 1952 29 0 0 chr6 27974493 27974734 -121542303 + L1_Mus1 LINE L1 5713 5953 -614 6 798 570 167 0 0 chr6 27974735 27974831 -121542206 - MTC LTR MaLR -325 96 1 6 798 245 360 106 19 chr6 27976852 27977059 -121539978 - RMER15 LTR ERVL -15 560 336 6 798 258 377 118 45 chr6 27978003 27978292 -121538745 - MER76 LTR ERVL -315 376 67 6 798 420 296 16 23 chr6 27978374 27978502 -121538535 - MIRb SINE MIR -77 191 65 6 798 438 274 146 0 chr6 27978814 27978978 -121538059 + MIR SINE MIR 20 207 -55 6 798 319 195 51 25 chr6 27980650 27980729 -121536308 + MER53 DNA hAT 112 192 -1 6 798 406 263 195 60 chr6 27980915 27981105 -121535932 + B3 SINE B2 1 195 0 6 798 1228 37 75 0 chr6 27982350 27982511 -121534526 - L1_Mus4 LINE L1 -856 5780 5608 6 798 5218 57 5 0 chr6 27982511 27983159 -121533878 + L1_Mus1 LINE L1 5917 6567 0 6 798 397 219 0 22 chr6 27984524 27984706 -121532331 + (ATGGTG)n Simple_repeat Simple_repeat 1 178 0 6 798 597 179 18 18 chr6 27984717 27984888 -121532149 + (ATGGTG)n Simple_repeat Simple_repeat 4 174 0 6 798 24 67 0 0 chr6 27987881 27987926 -121529111 + AT_rich Low_complexity Low_complexity 1 45 0 6 798 520 314 114 10 chr6 27987935 27988128 -121528909 + ID_B1 SINE B4 2 214 -10 6 798 474 239 9 0 chr6 27989374 27989483 -121527554 - Charlie4a DNA MER1_type -7 501 392 6 798 782 268 6 22 chr6 27989493 27989676 -121527361 + B3A SINE B2 3 182 -16 6 798 234 191 24 0 chr6 27989788 27989830 -121527207 + PB1D10 SINE Alu 68 110 -7 6 798 410 260 69 23 chr6 27989815 27989988 -121527049 - Charlie4a DNA MER1_type -60 448 268 6 798 253 324 94 31 chr6 27990114 27990337 -121526700 + L1ME5 LINE L1 5909 6145 -49 6 798 702 326 9 13 chr6 27990812 27991036 -121526001 - MLT1A0 LTR MaLR -108 257 35 6 798 3794 128 72 5 chr6 27991177 27991827 -121525210 - Lx2A1 LINE L1 -327 6681 5988 6 798 2001 133 18 6 chr6 27991828 27992160 -121524877 + Lx2A1 LINE L1 6673 7008 0 6 798 21 0 0 0 chr6 27993231 27993252 -121523785 + AT_rich Low_complexity Low_complexity 1 21 0 7 798 1267 47 105 0 chr6 27993425 27993597 -121523440 + B2_Mm1t SINE B2 4 193 0 7 798 273 169 0 0 chr6 27993637 27993696 -121523341 + CT-rich Low_complexity Low_complexity 1 59 0 7 798 198 0 0 0 chr6 27994027 27994049 -121522988 + (T)n Simple_repeat Simple_repeat 1 22 0 7 798 30 0 0 0 chr6 27994487 27994517 -121522520 + AT_rich Low_complexity Low_complexity 1 30 0 7 798 524 113 31 0 chr6 27994639 27994736 -121522301 + (GGGGA)n Simple_repeat Simple_repeat 5 104 0 7 798 444 19 0 0 chr6 27994970 27995023 -121522014 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 798 930 261 69 36 chr6 27995291 27995680 -121521357 - L1MA5 LINE L1 0 6300 5899 7 798 384 22 0 0 chr6 27996151 27996196 -121520841 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 798 183 42 0 0 chr6 27996493 27996517 -121520520 + (C)n Simple_repeat Simple_repeat 1 24 0 7 798 348 83 0 0 chr6 27997245 27997293 -121519744 + (GGGA)n Simple_repeat Simple_repeat 4 51 0 7 798 1203 107 0 0 chr6 27997305 27997483 -121519554 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 7 798 304 358 89 44 chr6 27997542 27997767 -121519270 + LTR33 LTR ERVL 26 260 -255 7 798 1218 277 88 14 chr6 27997866 27998218 -121518819 + MTEb LTR MaLR 1 378 -1 7 798 300 327 9 0 chr6 27998261 27998374 -121518663 + L1MC5 LINE L1 7633 7746 -215 7 798 439 335 39 39 chr6 27998726 27999009 -121518028 - B4A SINE B4 -8 284 2 7 798 470 257 25 92 chr6 27999146 27999429 -121517608 + L1MA4 LINE L1 6034 6297 -3 7 798 270 132 0 0 chr6 28000168 28000221 -121516816 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 798 231 36 0 0 chr6 28001228 28001256 -121515781 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 2 798 352 315 9 0 chr6 28001277 28001385 -121515652 - PB1D7 SINE Alu -11 109 1 3 798 475 277 6 6 chr6 28002176 28002336 -121514701 + L1MA6 LINE L1 6123 6282 -18 4 798 260 248 82 68 chr6 28002501 28002745 -121514292 + MER97c DNA MER1_type? 80 368 -722 5 798 495 48 0 0 chr6 28002834 28002896 -121514141 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 798 1098 204 66 112 chr6 28003227 28003547 -121513490 - MTEa LTR MaLR -12 367 63 7 798 231 307 122 67 chr6 28003427 28003591 -121513446 - MLT2B5 LTR ERVL -389 328 156 8 798 2671 113 14 57 chr6 28003787 28004227 -121512810 + BGLII LTR ERVK 1 421 0 9 798 23 54 0 0 chr6 28004477 28004514 -121512523 + AT_rich Low_complexity Low_complexity 1 37 0 1 798 312 120 0 0 chr6 28004567 28004617 -121512420 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 798 527 268 113 57 chr6 28004894 28005195 -121511842 - L2a LINE L2 -4 3422 3105 1 798 639 223 89 18 chr6 28005209 28005378 -121511659 + B3A SINE B2 7 187 -11 1 798 256 127 18 18 chr6 28005383 28005439 -121511598 + GA-rich Low_complexity Low_complexity 3 58 0 1 798 879 65 0 0 chr6 28005444 28005567 -121511470 + (GAA)n Simple_repeat Simple_repeat 1 123 0 1 798 543 302 76 23 chr6 28005593 28005857 -121511180 - L2a LINE L2 -343 3076 2799 1 798 306 0 0 0 chr6 28006283 28006317 -121510720 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 798 480 18 0 0 chr6 28006735 28006792 -121510245 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 798 23 33 0 0 chr6 28007371 28007401 -121509636 + AT_rich Low_complexity Low_complexity 1 30 0 1 798 35222 30 3 7 chr6 28007444 28012801 -121504236 + L1Md_T LINE L1 254 5586 -297 1 798 8483 32 0 0 chr6 28012801 28013796 -121503241 + L1Md_T LINE L1 5587 6581 -1 1 798 25 0 0 0 chr6 28013837 28013862 -121503175 + AT_rich Low_complexity Low_complexity 1 25 0 2 798 232 344 47 0 chr6 28013913 28013977 -121503060 + B4A SINE B4 85 151 -141 2 798 336 331 14 3 chr6 28013920 28014028 -121503009 + PB1D10 SINE Alu 10 123 -24 2 798 631 265 19 37 chr6 28014082 28014243 -121502794 + B3A SINE B2 2 159 -39 2 798 324 127 0 0 chr6 28014254 28014309 -121502728 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 798 261 0 0 0 chr6 28014411 28014440 -121502597 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2 798 3047 118 16 45 chr6 28014812 28015326 -121501711 + Lx LINE L1 6151 6649 -5 2 798 953 256 58 82 chr6 28015513 28015725 -121501312 + B4A SINE B4 7 230 -62 2 798 1107 35 7 0 chr6 28015725 28015870 -121501167 + L1Md_F2 LINE L1 6425 6570 -12 2 798 953 256 58 82 chr6 28015870 28015950 -121501087 + B4A SINE B4 231 292 0 2 798 404 365 97 52 chr6 28016017 28016286 -121500751 + B4 SINE B4 1 281 -11 2 798 461 266 9 33 chr6 28016510 28016720 -121500317 + L1MC LINE L1 2248 2452 -3694 3 798 1235 271 68 34 chr6 28016710 28017416 -121499621 + L1MC LINE L1 2679 3408 -2738 3 798 295 305 42 0 chr6 28017483 28017601 -121499436 + L1MC LINE L1 3800 3922 -2224 3 798 376 310 191 29 chr6 28017603 28017854 -121499183 + B4A SINE B4 1 292 0 3 798 805 310 138 20 chr6 28017925 28019004 -121498033 + L1MC LINE L1 3950 5155 -991 3 798 249 305 59 110 chr6 28019765 28019883 -121497154 + LTR33 LTR ERVL 127 238 -293 3 798 267 220 74 42 chr6 28019945 28020040 -121496997 + LTR33 LTR ERVL 384 481 -34 3 798 310 211 9 9 chr6 28020677 28020782 -121496255 + (CA)n Simple_repeat Simple_repeat 2 106 0 3 798 1163 259 147 17 chr6 28021530 28021891 -121495146 - MTD LTR MaLR -2 417 10 3 798 1371 77 22 0 chr6 28022127 28022310 -121494727 + B2_Mm2 SINE B2 1 187 -8 3 798 667 360 57 72 chr6 28023901 28024302 -121492735 - MLT1H LTR MaLR -132 417 23 3 798 377 39 20 0 chr6 28024436 28024487 -121492550 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 3 798 1558 183 14 21 chr6 28024507 28024792 -121492245 - Lx5 LINE L1 -1 7049 6767 3 798 316 170 297 21 chr6 28024881 28025019 -121492018 - B2_Mm2 SINE B2 -5 190 15 3 798 1020 94 107 0 chr6 28025036 28025195 -121491842 - B2_Mm1t SINE B2 -14 179 4 4 798 31 26 0 0 chr6 28025880 28025918 -121491119 + AT_rich Low_complexity Low_complexity 1 38 0 4 798 183 80 0 0 chr6 28025927 28025952 -121491085 + (TTG)n Simple_repeat Simple_repeat 1 25 0 4 798 303 93 0 0 chr6 28027830 28027873 -121489164 + (T)n Simple_repeat Simple_repeat 1 43 0 4 798 450 36 0 0 chr6 28028304 28028360 -121488677 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 798 203 0 37 0 chr6 28029659 28029686 -121487351 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 4 798 183 42 0 0 chr6 28029692 28029716 -121487321 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 798 1113 44 0 7 chr6 28029716 28029854 -121487183 - B1_Mm SINE Alu -10 137 1 4 798 534 250 37 185 chr6 28029977 28030193 -121486844 - RMER30 DNA MER1_type -9 193 10 4 798 189 0 0 0 chr6 28030525 28030546 -121486491 + (A)n Simple_repeat Simple_repeat 1 21 0 4 798 22 0 0 0 chr6 28031086 28031108 -121485929 + AT_rich Low_complexity Low_complexity 1 22 0 5 798 397 240 13 0 chr6 28031234 28031309 -121485728 + B3A SINE B2 1 76 -122 5 798 316 325 82 98 chr6 28031561 28031929 -121485108 - ORR1D2 LTR MaLR -8 362 1 5 798 487 276 23 30 chr6 28032048 28032179 -121484858 - MLT1D LTR MaLR -86 419 290 5 798 354 292 61 20 chr6 28032202 28032349 -121484688 - MLT1D LTR MaLR -397 230 78 5 798 1020 236 148 6 chr6 28032376 28032700 -121484337 - ORR1D2 LTR MaLR 0 370 1 5 798 185 0 40 0 chr6 28032758 28032783 -121484254 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 5 798 792 288 40 70 chr6 28032892 28033357 -121483680 + RMER15 LTR ERVL 1 575 0 5 798 1410 79 0 4 chr6 28033420 28033697 -121483340 + (GAAA)n Simple_repeat Simple_repeat 1 276 0 5 798 1512 201 170 3 chr6 28035789 28036148 -121480889 + MTC LTR MaLR 1 419 -2 5 798 324 0 0 0 chr6 28036215 28036251 -121480786 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 798 21 36 0 0 chr6 28036520 28036548 -121480489 + AT_rich Low_complexity Low_complexity 1 28 0 6 798 773 252 16 98 chr6 28036625 28036673 -121480364 - Tigger5 DNA MER2_type -39 2367 2329 6 798 1101 224 5 0 chr6 28036673 28036887 -121480150 + B3 SINE B2 2 216 0 6 798 773 252 16 98 chr6 28036887 28037093 -121479944 - Tigger5 DNA MER2_type -78 2328 2134 6 798 226 324 27 13 chr6 28037154 28037229 -121479808 - MLT1C LTR MaLR -14 453 378 6 798 415 365 42 9 chr6 28037260 28037473 -121479564 - MLT1C LTR MaLR -50 417 198 6 798 821 256 44 81 chr6 28037510 28037807 -121479230 + B4A SINE B4 1 286 -6 6 798 481 244 279 6 chr6 28037863 28038028 -121479009 - RMER15 LTR ERVL -135 440 231 6 798 256 282 89 13 chr6 28038065 28038144 -121478893 - RMER15 LTR ERVL -446 129 45 6 798 282 283 122 30 chr6 28038235 28038366 -121478671 - MLT1C LTR MaLR -324 143 1 6 798 253 290 75 61 chr6 28038654 28038801 -121478236 - MIR SINE MIR -14 248 100 6 798 295 269 125 0 chr6 28040172 28040276 -121476761 - L2a LINE L2 -17 3409 3293 6 798 192 40 0 0 chr6 28040550 28040575 -121476462 + (CAGGG)n Simple_repeat Simple_repeat 3 27 0 6 798 225 0 0 0 chr6 28040975 28041000 -121476037 + (TAA)n Simple_repeat Simple_repeat 3 27 0 6 798 452 292 42 30 chr6 28041040 28041206 -121475831 + MIR3 SINE MIR 33 200 -8 7 798 201 318 79 11 chr6 28042734 28042823 -121474214 - L2a LINE L2 -678 2741 2647 6 798 193 77 0 0 chr6 28043253 28043279 -121473758 - L2b LINE L2 -5 3370 3345 7 798 630 0 0 0 chr6 28044006 28044076 -121472961 + (TC)n Simple_repeat Simple_repeat 2 71 0 7 798 908 248 24 0 chr6 28045220 28045426 -121471611 - B3 SINE B2 -5 211 1 7 798 548 271 25 50 chr6 28046009 28046211 -121470826 + B3A SINE B2 2 198 0 7 798 585 227 2 23 chr6 28046317 28046468 -121470569 + MLT1A1 LTR MaLR 291 448 -19 7 798 286 370 66 12 chr6 28047061 28047228 -121469809 + AmnSINE1 SINE SINE 273 448 -127 7 798 480 287 8 8 chr6 28047437 28047560 -121469477 + MER33 DNA MER1_type 3 125 -199 7 798 548 242 163 0 chr6 28047612 28047802 -121469235 + Lx8 LINE L1 6988 7208 -265 7 798 302 213 28 192 chr6 28047930 28048180 -121468857 + Lx9 LINE L1 7397 7605 -39 7 798 1607 158 81 0 chr6 28048182 28048466 -121468571 + ORR1B2 LTR MaLR 1 307 -60 8 798 202 247 35 149 chr6 28048514 28048628 -121468409 - MER5A DNA MER1_type -2 187 87 8 99 209 365 118 5 chr6 28049197 28049409 -121467628 - L2a LINE L2 -230 3196 2961 8 799 228 242 126 78 chr6 28049494 28049597 -121467440 - RMER20B LTR ERVK -331 296 189 8 799 253 215 91 15 chr6 28049925 28049991 -121467046 - MER117 DNA MER1_type -89 108 38 8 799 30 0 0 0 chr6 28050482 28050512 -121466525 + AT_rich Low_complexity Low_complexity 1 30 0 8 799 401 96 9 22 chr6 28050607 28050698 -121466339 + B1_Mur4 SINE Alu 39 148 -2 8 799 245 321 95 53 chr6 28050725 28051103 -121465934 + L1MEd LINE L1 489 882 -5237 8 799 306 318 40 17 chr6 28051346 28051519 -121465518 - L1ME3A LINE L1 -102 6071 5895 8 799 584 225 68 55 chr6 28051935 28052081 -121464956 + B1_Mur1 SINE Alu 1 148 -1 8 799 1465 53 32 0 chr6 28052240 28052427 -121464610 + B2_Mm2 SINE B2 1 193 -2 9 799 414 332 36 41 chr6 28052476 28052696 -121464341 + MIRb SINE MIR 27 245 -23 9 799 226 371 11 0 chr6 28052789 28052878 -121464159 + MamSINE1 SINE tRNA 201 290 0 9 799 871 135 152 12 chr6 28054966 28055131 -121461906 - B2_Mm2 SINE B2 -6 189 2 9 799 192 220 40 0 chr6 28055208 28055258 -121461779 - MIRc SINE MIR -152 116 65 9 799 338 274 349 52 chr6 28055356 28055660 -121461377 + LTR16A1 LTR ERVL 58 452 -4 9 799 218 368 45 67 chr6 28056300 28056434 -121460603 - MIRc SINE MIR -133 135 5 9 799 270 264 53 42 chr6 28056662 28056757 -121460280 + L1MDa LINE L1 125 220 -6413 9 799 183 80 0 0 chr6 28056767 28056792 -121460245 + (TTG)n Simple_repeat Simple_repeat 2 26 0 9 799 813 231 290 63 chr6 28056799 28057134 -121459903 + MTD LTR MaLR 1 411 -8 9 799 518 302 191 43 chr6 28057161 28057346 -121459691 + L1MDa LINE L1 236 415 -6218 9 799 423 0 0 0 chr6 28057346 28057393 -121459644 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 799 518 302 191 43 chr6 28057393 28057605 -121459432 + L1MDa LINE L1 416 691 -5942 9 799 1890 259 164 29 chr6 28057702 28058400 -121458637 + L1MDa LINE L1 1263 2050 -4583 9 799 603 0 0 0 chr6 28058400 28058467 -121458570 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 1 799 1890 259 164 29 chr6 28058467 28058813 -121458224 + L1MDa LINE L1 2051 2448 -4185 9 799 417 288 51 0 chr6 28059609 28059727 -121457310 + RSINE1 SINE B4 1 124 -41 1 799 387 0 0 0 chr6 28059727 28059770 -121457267 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 799 180 0 0 0 chr6 28060094 28060114 -121456923 + (CAAAAA)n Simple_repeat Simple_repeat 1 20 0 1 799 221 296 68 0 chr6 28062043 28062131 -121454906 + MIRb SINE MIR 159 252 -16 1 799 225 174 0 0 chr6 28062322 28062368 -121454669 + (TTGTG)n Simple_repeat Simple_repeat 3 48 0 1 799 325 308 74 37 chr6 28062372 28062480 -121454557 - PB1D9 SINE Alu -5 115 4 1 799 1306 186 38 10 chr6 28063045 28063333 -121453704 + Lx4A LINE L1 6761 7056 -2 1 799 274 222 0 22 chr6 28063352 28063444 -121453593 + GA-rich Low_complexity Low_complexity 2 91 0 1 799 1205 273 80 26 chr6 28064473 28064925 -121452112 + RCHARR1 DNA MER1_type 1 476 -498 1 799 425 266 11 0 chr6 28064969 28065063 -121451974 + B4A SINE B4 1 95 -197 1 799 301 269 0 0 chr6 28065064 28065142 -121451895 + Lx7 LINE L1 7130 7207 -489 1 799 247 271 0 50 chr6 28065162 28065263 -121451774 + Lx7 LINE L1 7254 7349 -347 1 799 984 240 60 35 chr6 28065278 28065645 -121451392 + RCHARR1 DNA MER1_type 511 886 -88 1 799 287 253 12 24 chr6 28065783 28065868 -121451169 - RCHARR1 DNA MER1_type -2 972 889 1 799 1534 172 27 70 chr6 28066618 28066983 -121450054 + ORR1B1 LTR MaLR 1 381 -13 1 799 3055 69 5 2 chr6 28066984 28067379 -121449658 + L1_Mus4 LINE L1 6229 6624 -12 1 799 215 377 55 0 chr6 28067677 28067823 -121449214 - MIR SINE MIR -89 173 20 1 799 1131 97 0 0 chr6 28068360 28068525 -121448512 - B2_Mm2 SINE B2 -30 165 1 1 799 904 211 22 0 chr6 28069308 28069493 -121447544 + MER5A DNA MER1_type 1 189 0 1 799 29 0 0 0 chr6 28069554 28069583 -121447454 + AT_rich Low_complexity Low_complexity 1 29 0 1 799 193 331 72 36 chr6 28070956 28071094 -121445943 - L2c LINE L2 0 3387 3245 1 799 1308 71 16 0 chr6 28071163 28071347 -121445690 - B2_Mm2 SINE B2 -3 192 6 1 799 225 228 35 0 chr6 28076925 28076982 -121440055 + GA-rich Low_complexity Low_complexity 5 63 0 1 799 593 187 0 7 chr6 28079220 28079355 -121437682 + CT-rich Low_complexity Low_complexity 3 136 0 1 799 825 130 0 3 chr6 28079366 28079500 -121437537 - B1_Mur4 SINE Alu -7 143 13 1 799 203 323 20 40 chr6 28079850 28079950 -121437087 + MIR SINE MIR 46 143 -119 1 799 212 309 12 0 chr6 28080740 28080821 -121436216 + MIRc SINE MIR 184 265 -3 1 799 209 264 0 14 chr6 28081696 28081769 -121435268 + GA-rich Low_complexity Low_complexity 1 72 0 1 799 832 137 7 7 chr6 28086357 28086511 -121430526 + CT-rich Low_complexity Low_complexity 1 154 0 1 799 1407 191 56 47 chr6 28088414 28088588 -121428449 - ORR1D1 LTR MaLR -30 344 182 1 799 471 18 0 0 chr6 28088588 28088644 -121428393 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 799 1407 191 56 47 chr6 28088644 28088810 -121428227 - ORR1D1 LTR MaLR -193 181 2 1 799 382 351 72 91 chr6 28088877 28089306 -121427731 - LTR16C LTR ERVL -2 487 67 1 799 581 303 115 5 chr6 28089671 28089880 -121427157 - Lx6 LINE L1 -278 7182 6951 1 799 233 239 60 0 chr6 28089882 28089949 -121427088 + Lx9 LINE L1 5903 5973 -1671 1 799 784 305 91 3 chr6 28090053 28090349 -121426688 + Lx8 LINE L1 6096 6417 -1056 1 799 986 360 52 53 chr6 28090351 28090953 -121426084 + Lx8 LINE L1 6629 7229 -244 1 799 306 254 80 26 chr6 28091619 28091732 -121425305 - MLT1F2 LTR MaLR -7 553 435 1 799 969 288 27 24 chr6 28091702 28091994 -121425043 - MLT1F2 LTR MaLR -246 314 22 1 799 219 69 0 0 chr6 28092311 28092340 -121424697 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 799 192 40 0 0 chr6 28093087 28093112 -121423925 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 1 799 1862 220 20 4 chr6 28093340 28093798 -121423239 - Lx2B LINE L1 0 6997 6510 1 799 241 325 16 16 chr6 28094584 28094712 -121422325 - MIR3 SINE MIR -42 166 39 1 799 423 70 0 40 chr6 28095132 28095207 -121421830 + (TCTCCC)n Simple_repeat Simple_repeat 3 74 0 1 799 1274 0 0 7 chr6 28096056 28096203 -121420834 + (CTTTG)n Simple_repeat Simple_repeat 3 148 0 1 799 6328 30 0 1 chr6 28097559 28098285 -121418752 - L1Md_T LINE L1 0 6582 5858 1 799 21 0 0 0 chr6 28099225 28099246 -121417791 + AT_rich Low_complexity Low_complexity 1 21 0 1 799 4319 17 0 14 chr6 28099487 28099976 -121417061 + LTRIS_Mm LTR ERV1 1 482 0 1 799 382 304 154 6 chr6 28100989 28101158 -121415879 - MLT1A0 LTR MaLR 0 365 172 1 799 744 318 45 7 chr6 28101373 28101496 -121415541 - Lx8 LINE L1 -391 7082 6961 1 799 3337 41 5 0 chr6 28101496 28101890 -121415147 - MTA_Mm LTR MaLR 0 396 1 1 799 744 318 45 7 chr6 28101890 28102057 -121414980 - Lx8 LINE L1 -513 6960 6782 1 799 1594 299 20 11 chr6 28102072 28102518 -121414519 - Lx8 LINE L1 -816 6657 6208 1 799 247 281 73 0 chr6 28102871 28102967 -121414070 + MIRb SINE MIR 23 125 -143 1 799 615 158 18 0 chr6 28102969 28103083 -121413954 + RMER4B LTR ERVK 1 116 -469 1 799 7706 145 53 22 chr6 28103084 28104522 -121412515 - L1_Mur3 LINE L1 -1369 4511 3024 1 799 4111 37 2 2 chr6 28104522 28105006 -121412031 + L1Md_F3 LINE L1 6099 6582 -2 1 799 7706 145 53 22 chr6 28105006 28105053 -121411984 - L1_Mur3 LINE L1 -2857 3023 2980 1 799 8224 154 47 8 chr6 28105053 28106448 -121410589 - Lx5 LINE L1 -11 7039 5590 1 799 4845 159 34 28 chr6 28106466 28107384 -121409653 - L1_Mur3 LINE L1 -2873 3007 2078 1 799 261 98 0 0 chr6 28107384 28107425 -121409612 + (TGG)n Simple_repeat Simple_repeat 3 43 0 1 799 4845 159 34 28 chr6 28107425 28107453 -121409584 - L1_Mur3 LINE L1 -3803 2077 2055 1 799 791 258 99 2 chr6 28107930 28108254 -121408783 + RMER20B LTR ERVK 163 516 0 1 799 1194 20 0 62 chr6 28108605 28108767 -121408270 - L1_Mus1 LINE L1 0 6567 6416 1 799 816 263 132 38 chr6 28110015 28110578 -121406459 + Lx9 LINE L1 5390 6024 -1620 1 799 8595 33 1 3 chr6 28111206 28112671 -121404366 - L1Md_F2 LINE L1 -1 6581 5121 1 799 1168 265 84 27 chr6 28112710 28113044 -121403993 - ORR1E LTR MaLR -6 353 1 1 799 27 0 0 0 chr6 28113535 28113562 -121403475 + AT_rich Low_complexity Low_complexity 1 27 0 1 799 687 286 120 51 chr6 28114069 28114460 -121402577 + Lx9 LINE L1 7200 7617 -27 1 799 190 205 0 0 chr6 28114518 28114557 -121402480 - MIR SINE MIR -150 112 74 1 799 712 225 148 25 chr6 28115025 28115262 -121401775 - Lx8 LINE L1 -5 7468 7203 1 799 585 52 0 0 chr6 28115269 28115346 -121401691 + (TTTTG)n Simple_repeat Simple_repeat 2 78 0 1 799 1689 269 128 14 chr6 28115504 28116472 -121400565 - Lx8 LINE L1 -285 7188 6110 1 799 253 175 0 0 chr6 28116465 28116505 -121400532 + L1_Mur3 LINE L1 5502 5541 -339 1 799 379 243 41 14 chr6 28116660 28116806 -121400231 + ORSL-2b DNA Tip100 214 363 -145 1 799 629 167 74 0 chr6 28116909 28117017 -121400020 + Lx8 LINE L1 6841 6956 -517 1 799 377 222 0 10 chr6 28117018 28117118 -121399919 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 799 269 267 9 0 chr6 28117166 28117271 -121399766 + (CA)n Simple_repeat Simple_repeat 1 106 0 1 799 959 250 45 69 chr6 28117287 28117426 -121399611 + Lx8 LINE L1 6972 7121 -352 1 799 8263 54 0 0 chr6 28117426 28118384 -121398653 + L1Md_T LINE L1 5625 6582 0 1 799 959 250 45 69 chr6 28118384 28118532 -121398505 + Lx8 LINE L1 7122 7252 -221 1 799 1855 159 3 7 chr6 28118533 28118843 -121398194 + ORR1A4 LTR MaLR 13 321 -8 1 799 309 281 61 77 chr6 28118847 28119028 -121398009 + Lx8 LINE L1 7259 7436 -37 1 799 661 53 21 0 chr6 28119029 28119123 -121397914 + (TC)n Simple_repeat Simple_repeat 1 96 0 1 799 534 16 0 0 chr6 28119124 28119187 -121397850 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 799 235 287 34 22 chr6 28119673 28119762 -121397275 + MIRc SINE MIR 177 266 -2 1 799 633 345 25 51 chr6 28120052 28120140 -121396897 + Tigger7 DNA MER2_type 1 88 -2403 1 799 1504 158 33 72 chr6 28120140 28120475 -121396562 - RLTRETN_Mm LTR ERVK 0 322 1 1 799 633 345 25 51 chr6 28120475 28120701 -121396336 + Tigger7 DNA MER2_type 89 306 -2185 1 799 959 301 55 9 chr6 28120711 28121040 -121395997 + Tigger7 DNA MER2_type 2148 2491 0 1 799 600 91 0 0 chr6 28121305 28121393 -121395644 + (GGA)n Simple_repeat Simple_repeat 3 90 0 1 799 2001 165 39 11 chr6 28121470 28121825 -121395212 + ORR1C1 LTR MaLR 5 369 -9 1 799 4494 126 1 19 chr6 28121830 28122526 -121394511 - Lx2B LINE L1 -1681 4196 3513 1 799 9651 135 29 47 chr6 28122506 28124770 -121392267 + Lx2B LINE L1 4169 6383 -617 1 799 405 0 0 0 chr6 28124770 28124815 -121392222 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 799 9651 112 23 3 chr6 28124815 28125416 -121391621 + Lx2B LINE L1 6384 6998 -2 1 799 2580 92 11 26 chr6 28125506 28125885 -121391152 + L1_Mus4 LINE L1 6258 6630 -6 1 799 573 55 0 0 chr6 28125941 28126014 -121391023 + (GGGA)n Simple_repeat Simple_repeat 3 75 0 1 799 21 0 0 0 chr6 28126275 28126296 -121390741 + AT_rich Low_complexity Low_complexity 1 21 0 1 799 779 267 0 41 chr6 28126296 28126468 -121390569 - RSINE1 SINE B4 0 165 1 1 799 591 15 0 0 chr6 28127055 28127123 -121389914 + (TCC)n Simple_repeat Simple_repeat 3 70 0 1 799 252 0 0 0 chr6 28127808 28127836 -121389201 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 1 799 39464 5 0 0 chr6 28128153 28133508 -121383529 + L1Md_A LINE L1 232 5585 -298 1 799 9658 1 0 0 chr6 28133509 28134505 -121382532 + L1Md_A LINE L1 5587 6582 0 1 799 380 277 12 0 chr6 28136440 28136523 -121380514 + B3 SINE B2 2 85 -131 1 799 366 304 39 130 chr6 28136508 28136716 -121380321 - MLT1A LTR MaLR -173 201 13 1 799 561 202 209 0 chr6 28136733 28136862 -121380175 + B3 SINE B2 51 206 -10 1 799 2302 216 133 36 chr6 28136873 28137060 -121379977 - Lx7 LINE L1 0 7696 7522 1 799 1194 41 0 70 chr6 28137060 28137218 -121379819 + B1_Mm SINE Alu 1 147 0 1 799 2302 216 133 36 chr6 28137218 28137714 -121379323 - Lx7 LINE L1 -175 7521 6947 1 799 193 358 0 0 chr6 28138773 28138840 -121378197 - MIRc SINE MIR -142 126 60 1 799 315 287 245 44 chr6 28138908 28139177 -121377860 + MTE2a LTR MaLR 57 379 0 1 799 270 286 65 0 chr6 28139514 28139591 -121377446 - B1_Mur1 SINE Alu -1 148 67 1 799 23 33 0 0 chr6 28139599 28139629 -121377408 + AT_rich Low_complexity Low_complexity 1 30 0 1 799 252 368 23 0 chr6 28139780 28139951 -121377086 + (TTATA)n Simple_repeat Simple_repeat 3 177 0 1 799 287 315 62 0 chr6 28139901 28140063 -121376974 + (TTATG)n Simple_repeat Simple_repeat 3 174 0 1 799 296 345 35 0 chr6 28140084 28140255 -121376782 + (TTATG)n Simple_repeat Simple_repeat 3 179 0 1 799 21 0 0 0 chr6 28140453 28140474 -121376563 + AT_rich Low_complexity Low_complexity 1 21 0 1 799 300 279 6 0 chr6 28140978 28141069 -121375968 + L1MC4 LINE L1 6911 7027 -1015 1 799 679 286 129 51 chr6 28141126 28141570 -121375467 + L1MC4 LINE L1 7127 7620 -422 1 799 495 0 0 0 chr6 28142204 28142259 -121374778 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 799 267 58 231 0 chr6 28142262 28142314 -121374723 - L1_Mus2 LINE L1 0 6566 6503 1 799 382 307 8 8 chr6 28143932 28144060 -121372977 + L1MDa LINE L1 17 144 -6489 2 799 189 0 0 0 chr6 28144479 28144500 -121372537 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 799 333 0 0 0 chr6 28144500 28144536 -121372501 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 799 739 252 0 13 chr6 28145796 28145945 -121371092 + B1_Mur1 SINE Alu 1 147 -2 2 799 2108 78 3 3 chr6 28146075 28146359 -121370678 + ORR1A2 LTR MaLR 1 284 -43 2 799 6387 48 20 12 chr6 28146359 28147110 -121369927 + L1_Mus2 LINE L1 5810 6566 0 2 799 1728 123 55 124 chr6 28147110 28147187 -121369850 + ORR1A2 LTR MaLR 289 337 -9 2 799 281 282 0 0 chr6 28147557 28147628 -121369409 + PB1D10 SINE Alu 34 104 -13 2 799 407 347 55 7 chr6 28148991 28149136 -121367901 - Tigger5 DNA MER2_type -2164 242 91 2 799 5637 26 3 2 chr6 28149663 28150282 -121366755 - L1Md_T LINE L1 0 6582 5963 2 799 250 164 33 98 chr6 28150453 28150514 -121366523 - RMER15 LTR ERVL -6 569 513 2 799 450 224 43 148 chr6 28150514 28150673 -121366364 - L1ME2z LINE L1 -240 6204 6049 2 799 1433 79 6 0 chr6 28150673 28150851 -121366186 + B2_Mm1t SINE B2 1 179 -14 2 799 450 224 43 148 chr6 28150851 28150901 -121366136 - L1ME2z LINE L1 -396 6048 6017 2 799 909 81 7 42 chr6 28150962 28151104 -121365933 + URR1B DNA MER1_type 89 225 0 2 799 850 283 48 35 chr6 28151117 28151494 -121365543 - L1ME2z LINE L1 -445 5999 5618 2 799 43 16 0 31 chr6 28151504 28151531 -121365506 + AT_rich Low_complexity Low_complexity 1 27 0 2 799 3124 43 0 0 chr6 28151531 28151877 -121365160 - ORR1A1 LTR MaLR 0 346 1 2 799 43 16 0 31 chr6 28151877 28151914 -121365123 + AT_rich Low_complexity Low_complexity 1 36 0 2 799 849 127 0 0 chr6 28152641 28152775 -121364262 + (CGTG)n Simple_repeat Simple_repeat 2 135 0 2 799 455 276 37 28 chr6 28152777 28152885 -121364152 - B3A SINE B2 -43 155 47 2 799 1048 218 23 7 chr6 28152876 28153148 -121363889 + MTC LTR MaLR 11 256 -123 2 799 216 0 0 0 chr6 28153399 28153423 -121363614 + (T)n Simple_repeat Simple_repeat 1 24 0 2 799 653 282 85 55 chr6 28153603 28154001 -121363036 - MLT1D LTR MaLR -3 502 93 2 799 1072 138 58 11 chr6 28154001 28154191 -121362846 + Lx6 LINE L1 6785 6983 -477 2 799 847 159 41 6 chr6 28154193 28154364 -121362673 + Lx7 LINE L1 7372 7548 -148 2 799 320 282 11 96 chr6 28154391 28154485 -121362552 - MLT1D LTR MaLR -533 94 9 2 799 429 277 93 26 chr6 28154768 28154994 -121362043 + MER5C DNA MER1_type 34 274 -39 2 799 276 348 67 0 chr6 28155098 28155233 -121361804 + LTR78 LTR ERV1 773 916 -388 2 799 383 317 48 149 chr6 28155252 28155541 -121361496 + LTR78 LTR ERV1 1023 1282 -22 2 799 2319 293 43 24 chr6 28156208 28156954 -121360083 - Lx9 LINE L1 -136 7508 6749 2 799 548 274 84 62 chr6 28156947 28157146 -121359891 - Lx9 LINE L1 -1124 6520 6317 2 799 182 37 0 36 chr6 28157146 28157174 -121359863 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 799 548 274 84 62 chr6 28157174 28157200 -121359837 - Lx9 LINE L1 -1328 6316 6290 2 799 1441 89 5 40 chr6 28157352 28157551 -121359486 - B2_Mm2 SINE B2 -3 192 1 2 799 180 0 0 0 chr6 28158087 28158107 -121358930 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 799 269 234 0 15 chr6 28158109 28158174 -121358863 + B4A SINE B4 227 290 -2 2 799 685 162 34 0 chr6 28158263 28158380 -121358657 + B1_Mur4 SINE Alu 29 149 -1 2 799 410 329 38 38 chr6 28158370 28158528 -121358509 - MER115 DNA Tip100 -107 586 429 2 799 198 0 0 0 chr6 28158611 28158633 -121358404 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 799 326 80 20 0 chr6 28158640 28158690 -121358347 + (TATG)n Simple_repeat Simple_repeat 3 53 0 2 799 466 263 211 0 chr6 28158691 28158847 -121358190 - B3 SINE B2 -27 189 1 2 799 740 222 34 73 chr6 28159234 28159438 -121357599 + B3A SINE B2 3 198 0 2 799 260 265 0 0 chr6 28160071 28160139 -121356898 + L1ME4a LINE L1 5980 6047 -77 2 799 27 0 0 0 chr6 28160145 28160172 -121356865 + AT_rich Low_complexity Low_complexity 1 27 0 2 799 22 35 0 0 chr6 28160758 28160787 -121356250 + AT_rich Low_complexity Low_complexity 1 29 0 2 799 24 32 0 0 chr6 28161011 28161042 -121355995 + AT_rich Low_complexity Low_complexity 1 31 0 2 799 21 0 0 0 chr6 28161087 28161108 -121355929 + AT_rich Low_complexity Low_complexity 1 21 0 2 799 180 0 0 0 chr6 28161202 28161222 -121355815 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 799 593 205 35 5 chr6 28161427 28161566 -121355471 + B2_Mm2 SINE B2 59 210 -6 2 799 563 336 142 40 chr6 28162198 28162917 -121354120 + L1M5 LINE L1 4537 5328 -818 2 799 258 337 78 92 chr6 28162926 28163320 -121353717 - L2a LINE L2 0 3426 2984 2 799 545 276 27 33 chr6 28163575 28163725 -121353312 + B1F1 SINE Alu 1 149 0 2 799 185 0 0 39 chr6 28163725 28163751 -121353286 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 2 799 248 358 6 62 chr6 28164260 28164421 -121352616 - L2 LINE L2 -2170 1249 1098 2 799 185 135 0 26 chr6 28164462 28164500 -121352537 - L2 LINE L2 -2426 993 957 2 799 616 296 159 22 chr6 28164500 28164815 -121352222 - LTR16B LTR ERVL 0 463 106 2 799 22 35 0 0 chr6 28165456 28165485 -121351552 + GC_rich Low_complexity Low_complexity 1 29 0 2 799 189 0 0 0 chr6 28167082 28167103 -121349934 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 799 354 114 25 92 chr6 28167242 28167351 -121349686 + B2_Mm2 SINE B2 1 177 -18 2 799 615 240 23 0 chr6 28167521 28167650 -121349387 - RSINE1 SINE B4 -33 132 1 2 799 321 304 327 62 chr6 28168384 28168819 -121348218 - Charlie24 DNA MER1_type -1071 1379 830 2 799 237 132 0 0 chr6 28168906 28168944 -121348093 + (GAA)n Simple_repeat Simple_repeat 2 39 0 2 799 504 0 0 0 chr6 28169049 28169105 -121347932 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 799 2289 107 28 3 chr6 28169154 28169511 -121347526 - L1_Mus4 LINE L1 0 6636 6271 2 799 200 125 25 0 chr6 28170430 28170470 -121346567 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 799 4606 198 59 62 chr6 28170666 28171822 -121345215 + Lx7 LINE L1 6545 7696 0 2 799 365 304 34 147 chr6 28171941 28172261 -121344776 + B4A SINE B4 5 288 -4 2 799 320 258 0 0 chr6 28172460 28172526 -121344511 - ID4 SINE ID -15 68 3 2 799 525 288 44 17 chr6 28174235 28174415 -121342622 + B3A SINE B2 14 198 0 2 799 303 338 77 32 chr6 28176071 28176227 -121340810 - B4A SINE B4 -113 179 17 2 799 1042 147 15 78 chr6 28176397 28176603 -121340434 + B2_Mm2 SINE B2 1 193 -2 2 799 210 338 127 43 chr6 28176878 28177200 -121339837 + L2 LINE L2 2277 2625 -794 2 799 243 0 0 0 chr6 28177319 28177346 -121339691 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 799 300 53 0 0 chr6 28177346 28177383 -121339654 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 799 405 0 0 0 chr6 28177723 28177768 -121339269 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 799 408 286 44 0 chr6 28177924 28178015 -121339022 + B1F1 SINE Alu 14 108 -41 2 799 1099 167 28 32 chr6 28179239 28179456 -121337581 + URR1B DNA MER1_type 10 225 0 2 799 294 287 126 19 chr6 28179793 28179896 -121337141 - L2b LINE L2 -19 3356 3243 2 800 1071 220 9 0 chr6 28180593 28180807 -121336230 + B3 SINE B2 1 216 0 2 800 209 290 233 44 chr6 28181510 28181759 -121335278 - L2c LINE L2 -4 3383 3088 2 800 189 306 65 0 chr6 28182414 28182476 -121334561 - L2a LINE L2 -5 3421 3356 2 800 215 268 24 8 chr6 28182519 28182596 -121334441 + GA-rich Low_complexity Low_complexity 1 78 0 2 800 281 329 52 92 chr6 28182987 28183161 -121333876 - MIR SINE MIR -49 213 47 2 800 796 275 36 69 chr6 28184428 28184705 -121332332 + B4A SINE B4 25 292 0 2 800 500 258 62 15 chr6 28185810 28185940 -121331097 + B1F2 SINE Alu 14 149 0 2 800 1215 99 10 10 chr6 28186535 28186729 -121330308 + L1_Mus3 LINE L1 6441 6634 -4 2 800 195 100 0 0 chr6 28186769 28186799 -121330238 + (A)n Simple_repeat Simple_repeat 1 30 0 2 800 303 350 96 39 chr6 28187028 28187236 -121329801 - MIR SINE MIR -10 252 33 2 800 386 318 37 55 chr6 28187395 28187558 -121329479 + MIRb SINE MIR 98 257 -11 2 800 435 266 11 1 chr6 28187646 28187778 -121329259 + PB1D10 SINE Alu 5 137 -10 2 800 387 0 0 0 chr6 28188594 28188637 -121328400 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 800 356 298 60 0 chr6 28189212 28189296 -121327741 - PB1D10 SINE Alu -28 89 1 2 800 806 30 10 0 chr6 28192088 28192189 -121324848 + (TC)n Simple_repeat Simple_repeat 1 102 0 2 800 189 0 0 0 chr6 28192189 28192209 -121324828 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 800 21 0 0 0 chr6 28194720 28194741 -121322296 + AT_rich Low_complexity Low_complexity 1 21 0 2 800 244 304 38 12 chr6 28195463 28195543 -121321494 - B4A SINE B4 0 292 211 2 800 21 36 0 0 chr6 28196774 28196802 -121320235 + AT_rich Low_complexity Low_complexity 1 28 0 2 800 1596 271 67 13 chr6 28198401 28198864 -121318173 + Lx6 LINE L1 6947 7434 -26 2 800 1978 142 96 83 chr6 28199020 28199480 -121317557 - RMER4A LTR ERVK 0 466 1 2 800 698 155 147 0 chr6 28199544 28199673 -121317364 - B1_Mus1 SINE Alu 0 148 1 2 800 276 235 70 12 chr6 28200011 28200097 -121316940 + 4.5SRNA scRNA scRNA 1 91 -3 2 800 936 244 5 19 chr6 28200097 28200302 -121316735 + B3 SINE B2 14 215 -1 2 800 628 263 29 87 chr6 28200377 28200585 -121316452 + B3A SINE B2 1 196 -2 2 800 24 67 0 0 chr6 28200676 28200721 -121316316 + AT_rich Low_complexity Low_complexity 1 45 0 2 800 213 213 0 0 chr6 28200900 28200947 -121316090 + (CACG)n Simple_repeat Simple_repeat 1 47 0 2 800 268 261 97 22 chr6 28201017 28201175 -121315862 + L2c LINE L2 3049 3220 -167 2 800 1657 193 162 3 chr6 28203598 28203956 -121313081 + MTD LTR MaLR 5 419 0 2 800 1039 183 54 220 chr6 28204110 28204538 -121312499 + ORR1B2 LTR MaLR 1 357 -10 3 800 663 273 22 17 chr6 28205168 28205380 -121311657 - B3A SINE B2 -13 203 1 3 800 927 230 33 5 chr6 28205756 28205966 -121311071 + B3 SINE B2 1 216 0 3 800 23 0 0 0 chr6 28206244 28206267 -121310770 + AT_rich Low_complexity Low_complexity 1 23 0 3 800 237 320 33 98 chr6 28209369 28209584 -121307453 + L2b LINE L2 3226 3426 0 3 800 189 0 0 0 chr6 28210286 28210307 -121306730 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 3 800 204 158 0 0 chr6 28211112 28211150 -121305887 + (CGGG)n Simple_repeat Simple_repeat 2 39 0 3 800 28 29 0 0 chr6 28211307 28211342 -121305695 + GC_rich Low_complexity Low_complexity 1 35 0 3 800 189 154 0 0 chr6 28211489 28211528 -121305509 + (CGG)n Simple_repeat Simple_repeat 2 40 0 3 800 484 217 40 59 chr6 28212890 28213042 -121303995 - B1F SINE Alu 0 149 1 3 800 902 289 62 16 chr6 28213341 28213598 -121303439 + B4A SINE B4 1 269 -23 3 800 824 226 35 10 chr6 28214113 28214314 -121302723 + B3 SINE B2 1 206 -10 3 800 513 190 9 79 chr6 28214934 28215048 -121301989 + ID_B1 SINE B4 119 224 0 3 800 505 304 59 66 chr6 28215215 28215570 -121301467 + ORR1E LTR MaLR 1 341 -33 3 800 663 251 125 46 chr6 28216098 28216662 -121300375 - L1MA4 LINE L1 -792 5511 4900 3 800 781 255 105 32 chr6 28216670 28217044 -121299993 + L1MA4 LINE L1 5572 5974 -204 3 800 477 0 0 0 chr6 28217044 28217097 -121299940 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 3 800 343 310 105 39 chr6 28217097 28217132 -121299905 + L1MA4 LINE L1 5975 6008 -170 3 800 280 220 0 0 chr6 28217938 28217997 -121299040 + L1M4b LINE L1 1475 1533 -5801 3 800 2549 275 114 50 chr6 28218031 28219570 -121297467 + L1_Mur3 LINE L1 1241 2878 -3002 3 800 218 200 20 0 chr6 28219708 28219758 -121297279 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 800 4011 211 91 17 chr6 28219767 28220691 -121296346 - Lx7 LINE L1 -293 7403 6412 3 800 748 220 109 153 chr6 28220712 28221308 -121295729 + L1_Mur3 LINE L1 2892 3461 -2419 3 800 693 268 60 0 chr6 28221314 28221482 -121295555 + Lx6 LINE L1 7214 7391 -69 3 800 2750 248 114 27 chr6 28221539 28222657 -121294380 + L1_Mur3 LINE L1 3477 4692 -1188 3 800 2018 95 14 0 chr6 28222659 28222983 -121294054 - L1_Mus3 LINE L1 0 6638 6338 3 800 2524 71 3 0 chr6 28222983 28223333 -121293704 + L1_Mm LINE L1 5175 5525 -358 3 800 1502 258 102 48 chr6 28223312 28224016 -121293021 + L1_Mur3 LINE L1 4671 5412 -468 3 800 570 151 41 32 chr6 28224010 28224133 -121292904 + L1_Mur3 LINE L1 55 178 -7550 3 800 3608 145 97 26 chr6 28224138 28224980 -121292057 + L1_Mur3 LINE L1 2778 3679 -2201 3 800 5864 142 82 6 chr6 28224992 28226130 -121290907 + L1_Mur3 LINE L1 3970 5193 -687 3 800 3873 39 0 15 chr6 28226133 28226608 -121290429 + L1Md_F2 LINE L1 6101 6568 -14 3 800 3078 136 150 8 chr6 28226616 28227217 -121289820 - RMER6C LTR ERVK -4 686 1 3 800 4732 218 60 83 chr6 28227221 28227790 -121289247 + Lx7 LINE L1 6234 6831 -865 3 800 497 118 0 0 chr6 28227790 28227866 -121289171 + RMER6C LTR ERVK 615 690 0 3 800 4732 218 60 83 chr6 28227866 28228398 -121288639 + Lx7 LINE L1 6832 7393 -303 3 800 369 0 0 0 chr6 28228398 28228439 -121288598 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 800 4732 218 60 83 chr6 28228439 28228586 -121288451 + Lx7 LINE L1 7394 7529 -167 3 800 186 43 0 0 chr6 28228586 28228609 -121288428 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3 800 1256 41 0 0 chr6 28228609 28228754 -121288283 - B1_Mm SINE Alu -2 145 1 3 800 4732 218 60 83 chr6 28228754 28228924 -121288113 + Lx7 LINE L1 7530 7692 -4 3 800 751 248 26 10 chr6 28228985 28229202 -121287835 + L1_Mur3 LINE L1 5458 5673 -207 3 800 743 219 113 61 chr6 28229202 28229528 -121287509 + RLTR15 LTR ERVK 1 343 -16 3 800 2760 255 43 48 chr6 28230737 28231771 -121285266 + MYSERV-int LTR ERVK 3775 4802 -1748 3 800 509 353 78 90 chr6 28231839 28232441 -121284596 - RMER13A LTR ERVK -216 692 21 3 800 2520 178 51 24 chr6 28232487 28232651 -121284386 + MYSERV-int LTR ERVK 5291 5451 -1099 3 800 273 57 0 0 chr6 28232651 28232686 -121284351 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 800 2520 178 51 24 chr6 28232686 28233114 -121283923 + MYSERV-int LTR ERVK 5452 5898 -652 3 800 2836 162 26 39 chr6 28233104 28233670 -121283367 + MYSERV6-int LTR ERVK 8384 8942 -17 3 800 256 280 71 90 chr6 28233779 28233991 -121283046 + RLTR15 LTR ERVK 71 278 -81 3 800 3832 181 12 12 chr6 28234061 28234814 -121282223 + Lx6 LINE L1 6287 7039 -421 3 800 398 302 89 39 chr6 28234826 28235029 -121282008 + Lx8 LINE L1 7252 7464 -9 3 800 221 268 146 0 chr6 28235127 28235209 -121281828 - MIRb SINE MIR -39 229 136 3 800 339 349 76 22 chr6 28235265 28235488 -121281549 + L2 LINE L2 2322 2556 -863 3 800 417 282 18 0 chr6 28235768 28235878 -121281159 - PB1D10 SINE Alu 0 117 6 3 800 8534 192 46 35 chr6 28236387 28238948 -121278089 + Lx7 LINE L1 5095 7689 -7 3 800 1238 75 0 0 chr6 28238948 28239107 -121277930 + B2_Mm2 SINE B2 2 160 -35 3 800 372 76 490 9 chr6 28239128 28239226 -121277811 + B2_Mm2 SINE B2 47 191 -4 3 800 180 0 0 0 chr6 28240149 28240169 -121276868 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 800 1130 155 5 0 chr6 28240371 28240558 -121276479 - URR1A DNA MER1_type 0 226 39 3 800 405 0 0 0 chr6 28241005 28241050 -121275987 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 800 1075 60 0 0 chr6 28241781 28241914 -121275123 + B1_Mm SINE Alu 1 133 -14 3 800 581 291 145 68 chr6 28242244 28242569 -121274468 + ORR1E LTR MaLR 10 359 0 3 800 423 0 0 0 chr6 28244191 28244238 -121272799 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 800 231 276 34 17 chr6 28244390 28244449 -121272588 - L2c LINE L2 0 3387 3328 3 800 1664 189 83 24 chr6 28244601 28245012 -121272025 - RMER10A LTR ERVL -7 435 1 3 800 329 229 14 0 chr6 28245516 28245586 -121271451 + ID4_ SINE ID 2 72 -11 3 800 243 0 0 0 chr6 28245657 28245684 -121271353 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 800 279 284 100 100 chr6 28245847 28246168 -121270869 - L2c LINE L2 -7 3380 3060 3 800 915 224 127 91 chr6 28246301 28246719 -121270318 - RMER10A LTR ERVL -9 433 1 3 800 567 40 0 0 chr6 28246770 28246844 -121270193 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 3 800 512 192 107 19 chr6 28247022 28247181 -121269856 - L1MB7 LINE L1 -139 6045 5873 3 800 621 72 0 0 chr6 28247183 28247266 -121269771 + (TC)n Simple_repeat Simple_repeat 2 84 0 3 800 1811 69 12 0 chr6 28247600 28247845 -121269192 - L1_Mus1 LINE L1 0 6567 6320 3 800 7303 69 1 1 chr6 28247851 28249045 -121267992 - L1_Mus2 LINE L1 0 6566 5372 3 800 6227 94 1 0 chr6 28249037 28249948 -121267089 + L1_Mus2 LINE L1 4454 5365 -518 3 800 704 239 71 12 chr6 28250078 28250332 -121266705 - L1MB7 LINE L1 -288 5896 5628 3 800 236 186 56 28 chr6 28251051 28251123 -121265914 - L1MB7 LINE L1 -9 6175 6102 3 800 753 170 80 15 chr6 28251226 28251363 -121265674 + B1_Mur2 SINE Alu 3 148 -1 3 800 2025 116 77 3 chr6 28251436 28251773 -121265264 - ORR1B2 LTR MaLR -4 363 2 3 800 636 292 0 8 chr6 28251807 28251938 -121265099 - RSINE1 SINE B4 -11 154 25 3 800 219 350 12 0 chr6 28251876 28251956 -121265081 - B2_Mm2 SINE B2 -110 85 5 3 800 1468 110 2 278 chr6 28252008 28252462 -121264575 + ORR1A4 LTR MaLR 1 329 0 3 800 8908 143 45 95 chr6 28252467 28254598 -121262439 - ORR1A4-int LTR MaLR 0 1792 1 3 800 1923 105 5 129 chr6 28254598 28254971 -121262066 - ORR1A4 LTR MaLR 0 329 3 3 800 1335 268 143 21 chr6 28255041 28255713 -121261324 - L1MB8 LINE L1 -71 6107 5354 3 800 561 349 31 27 chr6 28255774 28256033 -121261004 - B4A SINE B4 -6 286 27 3 800 314 327 84 48 chr6 28256175 28256342 -121260695 + MER20B DNA MER1_type 306 478 -305 3 800 780 299 25 18 chr6 28257050 28257326 -121259711 + MER20B DNA MER1_type 506 783 0 3 800 396 246 70 111 chr6 28257609 28257866 -121259171 - MT2B LTR ERVL 0 533 242 3 800 791 249 97 40 chr6 28257880 28258127 -121258910 - MLT1C LTR MaLR -203 264 4 3 800 205 167 0 0 chr6 28258340 28258376 -121258661 + (CCAA)n Simple_repeat Simple_repeat 2 37 0 3 800 240 283 60 74 chr6 28258450 28258599 -121258438 + L1MA6 LINE L1 6119 6265 -35 3 800 447 292 217 7 chr6 28258665 28258803 -121258234 - B3 SINE B2 -39 177 11 3 800 348 83 0 0 chr6 28258805 28258853 -121258184 + (T)n Simple_repeat Simple_repeat 1 48 0 3 800 1082 89 0 0 chr6 28258853 28258999 -121258038 - B1_Mm SINE Alu 0 147 2 3 800 410 387 78 58 chr6 28259151 28259551 -121257486 - MER45C DNA Tip100 -488 465 58 3 800 374 331 29 0 chr6 28259844 28259983 -121257054 + MLT1J1 LTR MaLR 55 197 -247 3 800 550 314 47 88 chr6 28260049 28260493 -121256544 + Charlie4a DNA MER1_type 19 444 -64 3 800 893 101 14 7 chr6 28261076 28261089 -121255948 - B1_Mur4 SINE Alu 0 150 138 3 800 468 0 0 0 chr6 28261089 28261141 -121255896 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 3 800 943 64 0 0 chr6 28261141 28261266 -121255771 - B1_Mus1 SINE Alu -13 135 11 3 800 345 234 31 139 chr6 28261173 28261302 -121255735 - MT2B LTR ERVL -344 257 143 3 800 258 346 15 8 chr6 28261316 28261447 -121255590 + (CCA)n Simple_repeat Simple_repeat 1 132 0 3 800 227 230 0 11 chr6 28261518 28261606 -121255431 + (CCA)n Simple_repeat Simple_repeat 1 87 0 3 800 216 0 0 0 chr6 28262516 28262540 -121254497 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 800 362 250 47 65 chr6 28262689 28262796 -121254241 + MLT1B LTR MaLR 18 122 -268 3 800 598 221 24 12 chr6 28262798 28262967 -121254070 - Lx9 LINE L1 -211 7433 7263 3 800 681 128 159 58 chr6 28262968 28263175 -121253862 + Lx9 LINE L1 7410 7637 -7 3 800 522 67 0 0 chr6 28263337 28263412 -121253625 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 800 342 299 175 0 chr6 28263416 28263570 -121253467 + MLT1B LTR MaLR 208 388 -2 3 800 317 305 0 0 chr6 28264788 28264883 -121252154 - L1MA5 LINE L1 -10 6290 6196 3 800 370 284 62 119 chr6 28265051 28265227 -121251810 + B4 SINE B4 58 223 -69 3 800 884 124 16 0 chr6 28265100 28265229 -121251808 + B1_Mur4 SINE Alu 20 150 0 3 800 495 0 0 0 chr6 28265624 28265679 -121251358 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 3 800 1417 60 33 0 chr6 28265679 28265861 -121251176 - B2_Mm2 SINE B2 -7 188 1 3 800 25 0 0 0 chr6 28265868 28265893 -121251144 + AT_rich Low_complexity Low_complexity 1 25 0 3 800 189 111 18 53 chr6 28266209 28266266 -121250771 + T-rich Low_complexity Low_complexity 2 56 0 3 800 555 203 100 8 chr6 28266311 28266435 -121250602 - B1_Mus1 SINE Alu 0 127 2 3 800 1314 217 96 3 chr6 28266442 28266743 -121250294 - MTD LTR MaLR -10 409 81 4 800 1815 207 88 42 chr6 28266846 28267370 -121249667 + RMER19A LTR ERVK 187 734 -3 4 800 288 0 0 0 chr6 28267462 28267494 -121249543 + (TAA)n Simple_repeat Simple_repeat 3 34 0 4 800 1949 173 79 58 chr6 28267498 28268002 -121249035 - Lx7 LINE L1 -193 7503 6989 4 800 2519 91 16 3 chr6 28268034 28268399 -121248638 + Lx2 LINE L1 6628 6997 0 4 800 448 273 104 7 chr6 28269608 28269752 -121247285 + MIRc SINE MIR 6 163 -105 4 800 439 254 39 78 chr6 28270116 28270244 -121246793 + RSINE1 SINE B4 2 124 -41 4 800 450 53 0 0 chr6 28270271 28270328 -121246709 + (CATA)n Simple_repeat Simple_repeat 4 60 0 4 800 27 29 0 0 chr6 28270336 28270370 -121246667 + AT_rich Low_complexity Low_complexity 1 34 0 4 800 554 239 121 11 chr6 28270772 28270962 -121246075 + B3 SINE B2 1 211 -5 4 800 786 270 38 0 chr6 28271344 28271529 -121245508 + MTE2b LTR MaLR 6 197 -182 4 800 806 94 0 7 chr6 28271536 28271676 -121245361 + (TC)n Simple_repeat Simple_repeat 2 140 0 4 800 225 0 0 0 chr6 28271912 28271937 -121245100 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 800 566 227 0 6 chr6 28271972 28272136 -121244901 + (TG)n Simple_repeat Simple_repeat 2 164 0 4 800 225 254 0 63 chr6 28272214 28272277 -121244760 + U4 snRNA snRNA 1 59 -86 4 800 371 140 0 0 chr6 28272559 28272616 -121244421 + RLTR25B LTR ERVK 6 62 -966 4 800 4489 139 108 91 chr6 28272616 28273590 -121243447 + RLTR25B LTR ERVK 8 997 -31 4 800 586 234 132 71 chr6 28273684 28273896 -121243141 + RLTR41 LTR ERV1 1 225 -221 4 800 198 0 0 0 chr6 28274154 28274176 -121242861 + (TTAA)n Simple_repeat Simple_repeat 4 25 0 4 800 562 272 88 0 chr6 28274239 28274386 -121242651 - RSINE1 SINE B4 -4 161 2 4 800 906 218 18 6 chr6 28275361 28275532 -121241505 + B3 SINE B2 38 210 -6 4 800 524 268 18 0 chr6 28275810 28275922 -121241115 + RSINE1 SINE B4 4 117 -48 4 800 267 31 0 0 chr6 28275924 28275956 -121241081 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 800 673 102 0 28 chr6 28275958 28276019 -121241018 + (GAA)n Simple_repeat Simple_repeat 2 62 0 4 800 1088 91 0 22 chr6 28276019 28276199 -121240838 + (GGA)n Simple_repeat Simple_repeat 3 178 0 4 800 966 108 0 9 chr6 28276199 28276450 -121240587 + (GAA)n Simple_repeat Simple_repeat 1 248 0 4 800 459 0 0 0 chr6 28277210 28277261 -121239776 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 4 800 1177 43 0 0 chr6 28277261 28277400 -121239637 - B1_Mm SINE Alu -8 139 1 4 800 593 279 0 26 chr6 28277443 28277594 -121239443 + RSINE1 SINE B4 3 149 -16 4 800 21 36 0 0 chr6 28277613 28277641 -121239396 + AT_rich Low_complexity Low_complexity 1 28 0 4 800 987 210 48 48 chr6 28277806 28278016 -121239021 + B3 SINE B2 1 210 -6 4 800 321 47 0 0 chr6 28278855 28278898 -121238139 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 4 800 201 270 63 0 chr6 28279506 28279569 -121237468 + (CATG)n Simple_repeat Simple_repeat 3 69 0 4 800 2571 94 80 11 chr6 28280839 28281215 -121235822 - L1_Mur1 LINE L1 -81 5805 5404 4 800 1145 83 0 6 chr6 28281262 28281443 -121235594 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 800 270 0 0 0 chr6 28281634 28281664 -121235373 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 800 439 260 63 31 chr6 28281999 28282126 -121234911 + ID_B1 SINE B4 92 222 -2 4 800 268 276 138 0 chr6 28282205 28282321 -121234716 + L2a LINE L2 3293 3424 -2 4 800 742 241 33 49 chr6 28282634 28282943 -121234094 + L1MD LINE L1 4743 5028 -1118 4 800 3913 166 78 139 chr6 28282965 28284043 -121232994 - RMER1B Other Other -11 1055 44 4 800 369 289 90 54 chr6 28284328 28284551 -121232486 + L1MD LINE L1 5121 5351 -795 4 800 563 292 27 23 chr6 28284635 28284909 -121232128 + L1ME1 LINE L1 5479 5753 -425 4 800 390 57 0 0 chr6 28285217 28285270 -121231767 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 800 344 305 0 19 chr6 28285270 28285377 -121231660 + L1ME1 LINE L1 6065 6169 -10 4 800 26 50 0 0 chr6 28286570 28286610 -121230427 + AT_rich Low_complexity Low_complexity 1 40 0 4 800 354 329 89 13 chr6 28287197 28287354 -121229683 - MLT1H1 LTR MaLR -90 465 297 4 800 46 0 0 0 chr6 28287437 28287483 -121229554 + AT_rich Low_complexity Low_complexity 1 46 0 4 800 354 100 0 0 chr6 28287553 28287613 -121229424 + (A)n Simple_repeat Simple_repeat 1 60 0 4 800 289 325 43 0 chr6 28287693 28287810 -121229227 - Lx7 LINE L1 -382 7314 7193 4 800 1649 238 28 8 chr6 28287874 28288226 -121228811 - Lx6 LINE L1 -182 7278 6920 4 800 312 128 21 0 chr6 28288218 28288265 -121228772 - L1_Mur3 LINE L1 -166 5714 5667 4 800 890 167 8 0 chr6 28288266 28288398 -121228639 + B1_Mur3 SINE Alu 1 133 -16 4 800 2606 138 87 0 chr6 28288452 28288901 -121228136 - L1_Mur3 LINE L1 -206 5674 5187 4 800 2515 164 118 13 chr6 28288880 28288906 -121228131 + L1_Mur3 LINE L1 4636 4662 -1218 4 800 220 83 0 40 chr6 28288906 28288956 -121228081 + (TAA)n Simple_repeat Simple_repeat 2 49 0 4 800 2515 164 118 13 chr6 28288956 28289461 -121227576 + L1_Mur3 LINE L1 4663 5222 -658 4 800 735 230 138 5 chr6 28289513 28289701 -121227336 - B3 SINE B2 0 216 4 4 800 247 347 50 10 chr6 28289707 28289806 -121227231 - MLT1H1 LTR MaLR -341 208 106 4 800 926 167 0 0 chr6 28289830 28289968 -121227069 + B1_Mur2 SINE Alu 1 138 -11 4 800 513 0 0 0 chr6 28289968 28290025 -121227012 + (TAAAA)n Simple_repeat Simple_repeat 2 58 0 4 800 203 103 0 49 chr6 28290089 28290130 -121226907 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 800 232 374 0 10 chr6 28290360 28290460 -121226577 + MLT1A0 LTR MaLR 39 137 -228 4 800 312 172 0 0 chr6 28290506 28290564 -121226473 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 800 346 286 222 0 chr6 28290588 28290714 -121226323 + MLT1A0 LTR MaLR 208 361 -4 4 800 858 229 121 51 chr6 28290936 28291193 -121225844 + B4A SINE B4 1 275 -17 4 800 369 246 66 179 chr6 28291280 28291537 -121225500 - RMER10A LTR ERVL -66 376 149 4 800 227 305 12 0 chr6 28291789 28291871 -121225166 + L1M5 LINE L1 5787 5869 -304 4 800 932 255 170 54 chr6 28292075 28292411 -121224626 - MTEa LTR MaLR 0 379 5 4 800 329 295 77 0 chr6 28293052 28293130 -121223907 + RSINE1 SINE B4 82 165 0 4 800 326 377 52 9 chr6 28293710 28293825 -121223212 - PB1 SINE Alu -7 120 1 4 800 299 312 71 16 chr6 28294100 28294227 -121222810 - MIRb SINE MIR -78 190 57 4 800 505 294 124 38 chr6 28294284 28294549 -121222488 + B4A SINE B4 1 288 -4 4 800 189 224 0 0 chr6 28294641 28294699 -121222338 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 800 218 279 66 0 chr6 28294847 28294908 -121222129 + B1F1 SINE Alu 3 67 -82 4 800 280 339 59 25 chr6 28295612 28295730 -121221307 + MTEa LTR MaLR 258 379 0 4 800 1157 260 135 17 chr6 28295737 28296086 -121220951 + MTD LTR MaLR 19 383 -36 4 800 418 354 85 0 chr6 28297196 28297360 -121219677 + MLT1H2 LTR MaLR 9 186 -303 4 800 1403 230 125 3 chr6 28297383 28297736 -121219301 - MTD LTR MaLR -3 416 21 4 800 232 309 117 81 chr6 28297845 28298042 -121218995 + MLT1H2 LTR MaLR 285 488 -1 4 800 1057 230 5 5 chr6 28298375 28298585 -121218452 + B3 SINE B2 1 210 -6 4 800 23 33 0 0 chr6 28299056 28299086 -121217951 + AT_rich Low_complexity Low_complexity 1 30 0 4 800 5343 184 14 2 chr6 28299231 28300181 -121216856 + Lx9 LINE L1 6447 7407 -237 4 800 360 0 0 0 chr6 28300217 28300257 -121216780 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 800 470 136 146 0 chr6 28300257 28300367 -121216670 + Lx9 LINE L1 7519 7644 0 4 800 22 0 0 0 chr6 28300367 28300389 -121216648 + AT_rich Low_complexity Low_complexity 1 22 0 4 800 1016 278 20 28 chr6 28300466 28300718 -121216319 + B4 SINE B4 43 292 0 4 800 696 108 0 23 chr6 28300731 28300864 -121216173 + (TCTA)n Simple_repeat Simple_repeat 2 131 0 4 800 317 284 100 31 chr6 28301151 28301311 -121215726 + MIRc SINE MIR 85 255 -13 4 800 716 268 14 159 chr6 28301898 28302079 -121214958 - MER2 DNA MER2_type -3 342 193 4 800 270 320 0 0 chr6 28302079 28302157 -121214880 - ID4 SINE ID -4 79 2 4 800 716 268 14 159 chr6 28302157 28302264 -121214773 - MER2 DNA MER2_type -153 192 96 4 800 1807 284 193 19 chr6 28302724 28303559 -121213478 + Lx8 LINE L1 6357 7337 -136 4 800 357 24 0 0 chr6 28303559 28303601 -121213436 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 800 1807 284 193 19 chr6 28303601 28303713 -121213324 + Lx8 LINE L1 7338 7469 -4 4 800 385 231 43 21 chr6 28303855 28303948 -121213089 + B1F SINE Alu 53 147 -2 4 800 22 70 0 0 chr6 28304250 28304293 -121212744 + AT_rich Low_complexity Low_complexity 1 43 0 4 800 352 330 107 36 chr6 28304472 28304752 -121212285 + L1M4 LINE L1 4744 5043 -1103 4 800 226 331 53 15 chr6 28304860 28304992 -121212045 + Lx9 LINE L1 5852 5988 -1656 4 800 1234 241 125 9 chr6 28305188 28305723 -121211314 + Lx8 LINE L1 6237 6833 -640 4 800 1946 159 87 12 chr6 28305899 28306300 -121210737 + RLTR16 LTR ERVK 3 433 -72 4 800 189 0 0 0 chr6 28307029 28307050 -121209987 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 4 800 315 398 47 28 chr6 28307397 28307609 -121209428 + B4A SINE B4 54 269 -23 4 800 195 42 0 0 chr6 28307647 28307671 -121209366 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 800 21 57 0 0 chr6 28307680 28307715 -121209322 + AT_rich Low_complexity Low_complexity 1 35 0 4 800 229 214 71 0 chr6 28308617 28308673 -121208364 + B1_Mm SINE Alu 37 96 -51 4 800 25 0 0 0 chr6 28309063 28309088 -121207949 + AT_rich Low_complexity Low_complexity 1 25 0 4 800 295 297 73 27 chr6 28309275 28309467 -121207570 + L1M5 LINE L1 5542 5735 -427 4 800 1815 191 58 21 chr6 28309733 28310113 -121206924 + ORR1B1 LTR MaLR 1 394 0 4 800 1094 179 182 4 chr6 28310120 28310356 -121206681 - ORR1D1 LTR MaLR -96 278 1 4 800 909 157 7 21 chr6 28310399 28310542 -121206495 + B1_Mur4 SINE Alu 2 142 -8 4 800 213 39 0 0 chr6 28310653 28310679 -121206358 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 5 800 354 311 123 14 chr6 28310780 28311020 -121206017 - MTEb LTR MaLR -7 372 70 5 800 968 223 24 148 chr6 28311070 28311300 -121205737 + B4A SINE B4 2 221 -71 5 800 797 231 112 0 chr6 28311300 28311469 -121205568 + B3A SINE B2 1 188 -10 5 12 968 223 24 148 chr6 28311469 28311570 -121205467 + B4A SINE B4 222 292 0 5 801 207 269 0 19 chr6 28311572 28311625 -121205412 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 801 360 0 0 0 chr6 28311665 28311705 -121205332 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 5 801 328 298 0 23 chr6 28313950 28314036 -121203001 + PB1D7 SINE Alu 32 115 -5 5 801 635 67 0 11 chr6 28314439 28314529 -121202508 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 5 801 339 25 0 0 chr6 28314529 28314569 -121202468 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 801 250 301 0 0 chr6 28314661 28314734 -121202303 - L1MA5A LINE L1 -5 6295 6223 5 801 454 312 58 22 chr6 28314765 28314991 -121202046 - L1MA5A LINE L1 -302 5995 5762 5 801 289 291 218 38 chr6 28315344 28315813 -121201224 - L1M5 LINE L1 -1407 4739 4187 5 801 297 0 0 0 chr6 28315859 28315892 -121201145 + (TTG)n Simple_repeat Simple_repeat 1 33 0 5 801 731 279 13 30 chr6 28315919 28316155 -121200882 - L1MA5A LINE L1 -1280 4863 4632 5 801 252 0 0 0 chr6 28316170 28316198 -121200839 + (CATA)n Simple_repeat Simple_repeat 1 28 0 5 801 283 246 18 0 chr6 28316212 28316269 -121200768 + tRNA-Ala-GCY_ tRNA tRNA 18 75 0 5 801 807 279 53 0 chr6 28316429 28316637 -121200400 - ID_B1 SINE B4 -3 221 3 5 801 257 280 166 6 chr6 28317149 28317318 -121199719 - L1MEe LINE L1 -4306 548 353 5 801 2671 272 66 12 chr6 28317326 28318102 -121198935 + Charlie1a DNA MER1_type 1 818 -637 5 801 473 217 26 70 chr6 28318111 28318225 -121198812 + PB1D10 SINE Alu 1 109 -8 5 801 279 0 0 0 chr6 28318231 28318262 -121198775 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 801 315 0 0 0 chr6 28318797 28318832 -121198205 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 5 801 2229 138 82 3 chr6 28322494 28322850 -121194187 - ORR1C2 LTR MaLR 0 384 1 5 801 435 285 67 102 chr6 28323619 28323818 -121193219 + L1MD LINE L1 4981 5153 -993 5 801 498 250 42 14 chr6 28323818 28323960 -121193077 - B1F SINE Alu -1 148 3 5 801 435 285 67 102 chr6 28323960 28324151 -121192886 + L1MD LINE L1 5154 5357 -789 5 801 270 119 0 0 chr6 28324287 28324329 -121192708 - MTC LTR MaLR -204 217 176 5 801 2229 128 40 2 chr6 28324464 28324863 -121192174 - L1_Mur3 LINE L1 -2443 3437 3024 5 801 5912 145 36 10 chr6 28324861 28326546 -121190491 - L1_Mur3 LINE L1 -3608 2272 537 5 801 369 259 98 28 chr6 28326547 28326690 -121190347 + L1MA8 LINE L1 6129 6281 -10 5 801 2401 149 45 8 chr6 28326897 28327275 -121189762 - ORR1B1 LTR MaLR -2 392 1 5 801 716 188 0 0 chr6 28327301 28327418 -121189619 - B1_Mus1 SINE Alu -5 143 27 5 801 299 262 0 101 chr6 28327342 28327431 -121189606 - MT2B LTR ERVL -345 256 177 5 801 185 320 135 8 chr6 28327652 28327778 -121189259 + MIR SINE MIR 110 251 -11 5 801 321 26 0 0 chr6 28328196 28328234 -121188803 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 801 3406 156 25 7 chr6 28328558 28329107 -121187930 - Lx5 LINE L1 -301 6749 6191 5 801 714 214 49 119 chr6 28329103 28329143 -121187894 + Lx4B LINE L1 6793 6841 -217 5 801 279 79 0 0 chr6 28329143 28329181 -121187856 + (CCTG)n Simple_repeat Simple_repeat 1 38 0 5 801 714 214 49 119 chr6 28329181 28329426 -121187611 + Lx4B LINE L1 6842 7057 -1 5 801 620 164 80 28 chr6 28329444 28329620 -121187417 + Lx9 LINE L1 7458 7642 -2 5 801 320 281 93 37 chr6 28329912 28330019 -121187018 + B1F2 SINE Alu 37 149 0 5 801 1224 257 83 61 chr6 28330808 28331363 -121185674 + Lx9 LINE L1 7025 7591 -53 5 801 24 0 0 0 chr6 28331401 28331425 -121185612 + AT_rich Low_complexity Low_complexity 1 24 0 5 801 2091 161 16 25 chr6 28332444 28332808 -121184229 - Lx5 LINE L1 -145 6905 6545 5 801 232 62 0 0 chr6 28332806 28332838 -121184199 + Lx5 LINE L1 6518 6549 -501 5 801 199 274 65 47 chr6 28333397 28333504 -121183533 + L2 LINE L2 2317 2425 -994 5 801 534 282 23 40 chr6 28333529 28333693 -121183344 + ID_B1 SINE B4 68 224 0 5 801 345 348 117 12 chr6 28334133 28334296 -121182741 + MLT1J2 LTR MaLR 244 423 -25 5 801 270 236 121 22 chr6 28334314 28334386 -121182651 + B3 SINE B2 117 199 -17 5 801 414 0 0 0 chr6 28334386 28334432 -121182605 + (TAAAA)n Simple_repeat Simple_repeat 4 49 0 5 801 270 236 121 22 chr6 28334432 28334450 -121182587 + B3 SINE B2 200 216 0 5 801 282 237 0 33 chr6 28334441 28334502 -121182535 + B4 SINE B4 216 274 -18 5 801 309 305 116 102 chr6 28334996 28335072 -121181965 - B4A SINE B4 0 292 214 5 801 761 249 59 25 chr6 28335072 28335090 -121181947 - B3 SINE B2 0 216 200 5 801 459 0 0 0 chr6 28335090 28335141 -121181896 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 5 801 761 249 59 25 chr6 28335141 28335324 -121181713 - B3 SINE B2 -17 199 8 5 801 275 265 26 111 chr6 28336733 28336802 -121180235 + L1MB7 LINE L1 5359 5428 -756 5 801 1235 35 0 0 chr6 28336802 28336943 -121180094 + B1_Mm SINE Alu 1 141 -6 5 801 486 0 0 0 chr6 28336945 28336999 -121180038 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 5 801 275 265 26 111 chr6 28336999 28337079 -121179958 + L1MB7 LINE L1 5429 5498 -686 5 801 668 320 45 52 chr6 28337113 28337538 -121179499 + L1MB7 LINE L1 5705 6126 -58 5 801 322 275 12 0 chr6 28337540 28337620 -121179417 - ID4_ SINE ID 0 83 3 5 801 28 0 0 0 chr6 28337985 28338013 -121179024 + AT_rich Low_complexity Low_complexity 1 28 0 5 801 251 125 42 0 chr6 28338026 28338074 -121178963 + (CATA)n Simple_repeat Simple_repeat 2 51 0 5 801 192 77 0 0 chr6 28338852 28338878 -121178159 + (T)n Simple_repeat Simple_repeat 1 26 0 5 801 376 369 95 6 chr6 28339782 28339951 -121177086 + MIR SINE MIR 63 246 -16 5 801 544 288 48 134 chr6 28340711 28341165 -121175872 - L1MD LINE L1 -472 5770 5356 5 801 274 270 77 87 chr6 28341168 28341431 -121175606 + RMER12 LTR ERVK 730 996 -326 5 801 891 280 42 21 chr6 28341431 28341716 -121175321 - B4A SINE B4 0 292 2 5 801 274 270 77 87 chr6 28341716 28341752 -121175285 + RMER12 LTR ERVK 997 1026 -296 5 801 424 228 65 14 chr6 28341765 28341903 -121175134 - L1MD LINE L1 -913 5233 5089 5 801 3273 176 31 2 chr6 28342429 28342890 -121174147 + RLTR20D LTR ERVK 1 469 -99 5 801 270 0 0 0 chr6 28342890 28342920 -121174117 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 801 3273 176 31 2 chr6 28342920 28343010 -121174027 + RLTR20D LTR ERVK 470 566 -2 5 801 215 275 12 24 chr6 28343186 28343268 -121173769 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 5 801 697 228 73 188 chr6 28343291 28343398 -121173639 + B4A SINE B4 1 89 -203 5 801 1400 90 16 0 chr6 28343398 28343587 -121173450 + B2_Mm2 SINE B2 2 193 -2 5 801 697 228 73 188 chr6 28343587 28343809 -121173228 + B4A SINE B4 90 292 0 5 801 387 89 0 0 chr6 28343819 28343875 -121173162 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 801 3870 165 101 10 chr6 28343976 28344811 -121172226 + RMER1B Other Other 41 1066 0 5 801 400 310 0 9 chr6 28345077 28345191 -121171846 + MER5A1 DNA MER1_type 50 162 -4 5 801 1190 27 82 0 chr6 28345191 28345338 -121171699 + B2_Mm1a SINE B2 2 160 -33 5 801 236 0 0 81 chr6 28345338 28345375 -121171662 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 5 801 188 234 68 80 chr6 28346341 28346429 -121170608 - MER5B DNA MER1_type -69 109 23 5 801 1157 139 114 0 chr6 28348293 28348494 -121168543 + URR1B DNA MER1_type 1 224 -1 5 801 509 254 53 15 chr6 28348598 28348730 -121168307 + B1F2 SINE Alu 13 149 0 5 801 779 197 109 21 chr6 28348788 28348980 -121168057 + B3 SINE B2 1 209 -7 5 801 559 185 92 0 chr6 28349108 28349227 -121167810 + B1_Mur1 SINE Alu 7 136 -13 5 801 850 234 43 38 chr6 28349867 28350076 -121166961 + B3 SINE B2 2 211 -5 5 801 762 290 54 23 chr6 28350090 28350348 -121166689 - Lx8 LINE L1 -10 7463 7198 5 801 253 243 27 41 chr6 28350370 28350443 -121166594 + RMER17A LTR ERVK 110 181 -570 5 801 640 261 127 5 chr6 28350443 28350655 -121166382 - Lx8 LINE L1 -409 7064 6827 5 801 669 315 107 30 chr6 28350896 28351194 -121165843 - MLT1A0 LTR MaLR -18 347 27 5 801 364 232 14 0 chr6 28352576 28352645 -121164392 - RLTR17 LTR ERVK -422 270 201 5 801 2553 176 7 116 chr6 28352696 28353084 -121163953 - RLTR17 LTR ERVK 0 692 323 5 801 944 103 0 93 chr6 28353084 28353234 -121163803 + B1_Mus1 SINE Alu 3 138 -10 5 801 333 0 0 0 chr6 28353234 28353271 -121163766 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 5 801 2553 176 7 116 chr6 28353271 28353316 -121163721 - RLTR17 LTR ERVK -370 322 303 5 801 3300 69 7 0 chr6 28353316 28353737 -121163300 + L1Md_F3 LINE L1 6149 6572 -12 5 801 2553 176 7 116 chr6 28353737 28353854 -121163183 - RLTR17 LTR ERVK -390 302 201 5 801 409 308 16 41 chr6 28354259 28354381 -121162656 + PB1D9 SINE Alu 2 120 0 5 801 1232 42 0 0 chr6 28355480 28355622 -121161415 + B1_Mus1 SINE Alu 1 142 -6 5 801 180 0 0 0 chr6 28355624 28355644 -121161393 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 801 1735 306 81 5 chr6 28355727 28356319 -121160718 + Lx8 LINE L1 6691 7327 -146 5 801 441 0 0 0 chr6 28356319 28356368 -121160669 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 801 521 232 61 30 chr6 28357037 28357278 -121159759 + L1MC4 LINE L1 7622 7898 -144 5 801 830 229 65 5 chr6 28357346 28357530 -121159507 + B3A SINE B2 1 195 -3 5 801 378 0 0 0 chr6 28357535 28357577 -121159460 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 801 881 176 0 0 chr6 28357586 28357722 -121159315 - B1_Mus2 SINE Alu -3 144 9 5 801 1237 108 11 6 chr6 28358477 28358654 -121158383 + B2_Mm1t SINE B2 2 179 -14 5 801 352 113 5 25 chr6 28358701 28358817 -121158220 + B2_Mm2 SINE B2 47 195 0 5 801 204 40 0 0 chr6 28359526 28359551 -121157486 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 5 801 1247 201 37 160 chr6 28359891 28360323 -121156714 + MTE2a LTR MaLR 1 379 0 5 801 1502 83 0 0 chr6 28360355 28360548 -121156489 + B2_Mm1t SINE B2 1 193 0 5 801 246 318 43 0 chr6 28360554 28360651 -121156386 + B1F1 SINE Alu 1 98 -19 5 801 446 254 138 18 chr6 28360666 28360910 -121156127 + L1_Rod LINE L1 5289 5536 -761 5 801 5054 159 25 43 chr6 28360944 28361890 -121155147 + Lx5 LINE L1 6119 7047 -3 5 801 455 277 86 43 chr6 28362235 28362397 -121154640 + B4 SINE B4 1 169 -123 6 801 180 0 0 0 chr6 28362449 28362469 -121154568 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 801 843 82 3 10 chr6 28362469 28362590 -121154447 - B1_Mm SINE Alu -9 140 19 6 801 1124 75 7 0 chr6 28362596 28362743 -121154294 + B1_Mus1 SINE Alu 1 148 0 6 801 270 219 82 127 chr6 28362785 28362808 -121154229 + B3 SINE B2 19 37 -179 6 801 1413 84 21 0 chr6 28362808 28362998 -121154039 + B2_Mm2 SINE B2 1 194 -1 6 801 270 219 82 127 chr6 28362998 28363084 -121153953 + B3 SINE B2 38 123 -93 6 801 189 0 0 0 chr6 28363110 28363131 -121153906 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 801 772 236 7 0 chr6 28363155 28363303 -121153734 + B1_Mur3 SINE Alu 1 149 0 6 801 596 275 55 6 chr6 28363853 28364019 -121153018 + ID_B1 SINE B4 82 253 -39 6 801 511 281 36 0 chr6 28364012 28364151 -121152886 + B3 SINE B2 72 215 -1 6 801 433 158 98 0 chr6 28364158 28364240 -121152797 - B1_Mus2 SINE Alu 0 147 58 6 801 791 78 191 0 chr6 28364268 28364383 -121152654 + B1_Mus1 SINE Alu 2 138 -10 6 801 792 107 0 0 chr6 28364455 28364576 -121152461 + (TAGA)n Simple_repeat Simple_repeat 2 122 0 6 801 731 227 0 28 chr6 28364579 28364724 -121152313 + B1_Mur1 SINE Alu 2 142 -7 6 801 416 184 261 18 chr6 28365009 28365120 -121151917 + B1_Mus1 SINE Alu 3 140 -8 6 801 2751 271 32 25 chr6 28365150 28365864 -121151173 + Lx8 LINE L1 6200 6918 -555 6 801 906 235 10 19 chr6 28365868 28366076 -121150961 + B3 SINE B2 1 206 -10 6 801 25 0 0 0 chr6 28366096 28366121 -121150916 + AT_rich Low_complexity Low_complexity 1 25 0 6 801 519 221 0 0 chr6 28370044 28370139 -121146898 + PB1D9 SINE Alu 20 114 -6 6 801 309 82 0 0 chr6 28370139 28370188 -121146849 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 801 201 254 159 0 chr6 28372188 28372251 -121144786 - MIRb SINE MIR -149 119 47 6 801 579 199 7 97 chr6 28372721 28372866 -121144171 + RSINE1 SINE B4 2 133 -32 6 801 1214 54 0 0 chr6 28372890 28373037 -121144000 + B1_Mm SINE Alu 1 147 0 6 801 567 164 35 43 chr6 28373184 28373299 -121143738 + B1_Mur1 SINE Alu 36 149 0 6 801 24 53 0 0 chr6 28373497 28373535 -121143502 + GC_rich Low_complexity Low_complexity 1 38 0 6 801 216 67 0 0 chr6 28373561 28373591 -121143446 + (CGG)n Simple_repeat Simple_repeat 3 32 0 6 801 184 111 0 43 chr6 28373641 28373688 -121143349 + C-rich Low_complexity Low_complexity 5 49 0 6 801 24 77 0 0 chr6 28373769 28373821 -121143216 + GC_rich Low_complexity Low_complexity 1 52 0 6 801 201 39 0 0 chr6 28375007 28375033 -121142004 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 6 801 243 133 0 0 chr6 28376453 28376498 -121140539 + (T)n Simple_repeat Simple_repeat 1 45 0 6 801 318 106 0 0 chr6 28378206 28378253 -121138784 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 801 279 0 0 0 chr6 28378845 28378876 -121138161 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 801 297 0 0 0 chr6 28378876 28378908 -121138129 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 801 265 102 78 39 chr6 28378922 28378973 -121138064 - RSINE1 SINE B4 -40 125 73 6 801 311 293 18 108 chr6 28378983 28379094 -121137943 - B4A SINE B4 -111 181 81 6 801 616 219 145 7 chr6 28379142 28379280 -121137757 - RSINE1 SINE B4 -3 162 6 6 801 1080 90 14 7 chr6 28379400 28379546 -121137491 + B1_Mm SINE Alu 1 147 0 6 801 841 171 14 14 chr6 28379645 28379793 -121137244 - B1_Mur1 SINE Alu 0 149 2 6 801 1406 239 29 19 chr6 28380767 28380849 -121136188 - MTD LTR MaLR -13 406 302 6 801 792 32 0 0 chr6 28380849 28380944 -121136093 + (CTG)n Simple_repeat Simple_repeat 1 95 0 6 801 1406 255 78 34 chr6 28380944 28381252 -121135785 - MTD LTR MaLR -86 333 8 6 801 250 278 14 0 chr6 28381897 28381969 -121135068 - L1ME2 LINE L1 -43 6136 6064 6 801 3679 91 8 22 chr6 28382003 28382509 -121134528 + L1Md_F2 LINE L1 5914 6412 -170 6 801 909 293 43 53 chr6 28382535 28382631 -121134406 - L1ME2 LINE L1 -184 5980 5893 6 801 1270 83 33 16 chr6 28382631 28382815 -121134222 - B2_Mm2 SINE B2 -7 188 2 6 801 909 293 43 53 chr6 28382815 28383132 -121133905 - L1ME2 LINE L1 -272 5892 5571 6 801 294 276 0 125 chr6 28383132 28383244 -121133793 + B1F2 SINE Alu 1 98 -51 6 801 465 309 61 12 chr6 28383326 28383699 -121133338 - L1ME2 LINE L1 -588 5591 5200 6 801 387 0 0 0 chr6 28383703 28383746 -121133291 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6 801 633 137 98 41 chr6 28383747 28383869 -121133168 - B1_Mur2 SINE Alu 0 149 21 6 801 329 167 58 43 chr6 28383816 28383885 -121133152 - MT2B LTR ERVL -361 240 171 6 801 218 32 32 0 chr6 28384243 28384274 -121132763 + (AGGGGG)n Simple_repeat Simple_repeat 3 34 0 6 801 366 288 17 67 chr6 28384658 28384777 -121132260 - RSINE1 SINE B4 -35 130 18 6 801 229 347 156 0 chr6 28384801 28384968 -121132069 + MIRc SINE MIR 26 218 -50 6 801 231 257 93 13 chr6 28384997 28385072 -121131965 + MIRm SINE MIR 178 258 -18 6 801 774 282 16 59 chr6 28385095 28385400 -121131637 + B4A SINE B4 1 292 0 6 801 290 207 133 55 chr6 28386214 28386342 -121130695 + Lx3_Mus LINE L1 6864 7001 -8 6 801 1123 29 0 56 chr6 28386344 28386488 -121130549 + B1_Mus1 SINE Alu 1 136 -12 6 801 186 0 0 81 chr6 28386489 28386526 -121130511 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 6 801 216 0 0 0 chr6 28386534 28386558 -121130479 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 801 396 256 76 49 chr6 28387475 28387619 -121129418 - B1F SINE Alu -1 148 1 6 801 733 285 17 0 chr6 28387619 28387681 -121129356 - ID SINE ID -140 84 20 6 801 254 314 117 10 chr6 28387686 28387789 -121129248 + MIR3 SINE MIR 84 197 -65 6 801 184 291 11 92 chr6 28387884 28387971 -121129066 + MIR3 SINE MIR 115 194 -14 6 801 188 200 38 57 chr6 28388061 28388114 -121128923 + MIRc SINE MIR 184 235 -33 6 801 202 73 24 24 chr6 28388185 28388227 -121128810 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 6 801 282 325 0 0 chr6 28388966 28389049 -121127988 + (CATATA)n Simple_repeat Simple_repeat 1 83 0 6 801 241 220 88 30 chr6 28389077 28389167 -121127870 + B1F SINE Alu 17 142 -7 6 801 216 0 0 0 chr6 28389192 28389216 -121127821 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 801 573 179 54 0 chr6 28389451 28389563 -121127474 - Lx9 LINE L1 -268 7376 7259 6 801 367 132 139 38 chr6 28389557 28389636 -121127401 + Lx9 LINE L1 7384 7470 -174 6 801 277 218 23 93 chr6 28389654 28389740 -121127297 + Lx9 LINE L1 6806 6885 -759 6 801 198 0 0 0 chr6 28389876 28389898 -121127139 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 6 801 1114 179 268 34 chr6 28389936 28390294 -121126743 - RMER10A LTR ERVL 0 442 1 6 801 1714 194 22 27 chr6 28390364 28390729 -121126308 + Lx9 LINE L1 7098 7460 -184 6 801 360 0 0 0 chr6 28390731 28390771 -121126266 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 801 263 211 110 46 chr6 28390774 28390883 -121126154 + Lx9 LINE L1 7524 7639 -5 6 801 2011 118 54 12 chr6 28391052 28391388 -121125649 + ORR1B2 LTR MaLR 1 350 -17 6 801 263 268 179 0 chr6 28391617 28391785 -121125252 - MER113 DNA MER1_type -23 498 301 6 801 946 94 0 0 chr6 28391811 28391949 -121125088 + B1_Mus2 SINE Alu 9 146 -1 6 801 33 43 0 0 chr6 28392031 28392078 -121124959 + AT_rich Low_complexity Low_complexity 1 47 0 6 801 315 0 0 0 chr6 28392127 28392162 -121124875 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 801 204 40 0 0 chr6 28392258 28392283 -121124754 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 6 801 682 261 0 7 chr6 28392860 28393003 -121124034 - RSINE1 SINE B4 -23 142 1 6 801 1445 44 67 0 chr6 28393158 28393319 -121123718 + B2_Mm1t SINE B2 2 174 -19 6 801 189 0 0 0 chr6 28393319 28393340 -121123697 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 6 801 1445 44 67 0 chr6 28393340 28393358 -121123679 + B2_Mm1t SINE B2 175 192 -1 6 801 589 127 9 18 chr6 28394212 28394324 -121122713 + (TGGA)n Simple_repeat Simple_repeat 4 114 0 6 801 648 0 0 0 chr6 28394614 28394686 -121122351 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 801 241 314 78 10 chr6 28395516 28395619 -121121418 + MIR3 SINE MIR 13 122 -86 6 801 198 0 0 0 chr6 28398553 28398575 -121118462 + (A)n Simple_repeat Simple_repeat 1 22 0 6 801 441 0 0 0 chr6 28399372 28399421 -121117616 + (GGA)n Simple_repeat Simple_repeat 2 50 0 6 801 395 272 191 19 chr6 28402434 28402696 -121114341 - L1MC3 LINE L1 -64 7721 7415 6 801 663 163 101 40 chr6 28402750 28402948 -121114089 - L1MA6 LINE L1 -29 6271 6062 6 801 403 135 22 15 chr6 28403034 28403169 -121113868 + T-rich Low_complexity Low_complexity 3 138 0 6 801 477 252 16 32 chr6 28403171 28403294 -121113743 - ID_B1 SINE B4 -2 222 102 6 801 1804 289 106 95 chr6 28403309 28403722 -121113315 - L1MC3 LINE L1 -394 7391 6993 6 801 1153 63 0 0 chr6 28403722 28403859 -121113178 + B1_Mus2 SINE Alu 2 138 -9 6 801 279 0 0 0 chr6 28403859 28403890 -121113147 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 801 1804 289 106 95 chr6 28403890 28404089 -121112948 - L1MC3 LINE L1 -793 6992 6846 6 801 2288 78 3 7 chr6 28404089 28404399 -121112638 - L1_Mus1 LINE L1 0 6567 6259 6 801 1804 289 106 95 chr6 28404399 28405681 -121111356 - L1MC3 LINE L1 -940 6845 5479 6 801 687 201 0 28 chr6 28405686 28405829 -121111208 - B1_Mur4 SINE Alu -1 149 11 6 801 465 150 108 20 chr6 28405881 28405983 -121111054 - PB1D9 SINE Alu -1 119 9 6 801 304 256 22 34 chr6 28405903 28405992 -121111045 - B4A SINE B4 -119 173 86 6 801 400 254 42 28 chr6 28405994 28406136 -121110901 - B1_Mus1 SINE Alu 0 148 5 6 801 892 250 42 104 chr6 28406140 28406320 -121110717 - L1MC3 LINE L1 -1107 5039 4863 6 801 1190 197 14 0 chr6 28406320 28406528 -121110509 + B3 SINE B2 1 211 -5 6 801 892 250 42 104 chr6 28406528 28406749 -121110288 - L1MC3 LINE L1 -1284 4862 4663 6 801 290 26 26 0 chr6 28406768 28406807 -121110230 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 801 464 250 69 0 chr6 28406828 28406944 -121110093 - RSINE1 SINE B4 -34 131 8 6 801 830 288 32 74 chr6 28406953 28407362 -121109675 - L1MC3 LINE L1 -1493 4653 4262 6 801 238 274 0 16 chr6 28407811 28407874 -121109163 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 801 408 324 35 0 chr6 28407894 28408039 -121108998 - L1MC1 LINE L1 -13 6320 6171 6 801 1153 62 7 0 chr6 28408069 28408214 -121108823 - B1_Mus2 SINE Alu 0 147 2 7 801 697 264 104 78 chr6 28408214 28408600 -121108437 - L1MC3 LINE L1 -2137 4009 3613 6 801 691 206 73 0 chr6 28408932 28409068 -121107969 + B1_Mur1 SINE Alu 1 146 -3 7 801 222 37 0 0 chr6 28409437 28409464 -121107573 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 801 539 260 64 61 chr6 28409491 28409742 -121107295 - B4 SINE B4 -8 284 43 7 801 557 316 61 8 chr6 28411253 28411499 -121105538 - L1MB4 LINE L1 -23 6157 5899 7 801 250 176 39 19 chr6 28412072 28412124 -121104913 - Lx9 LINE L1 -383 7261 7209 7 801 364 169 0 0 chr6 28412233 28412292 -121104745 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 7 801 212 250 0 0 chr6 28412294 28412346 -121104691 + RSINE1 SINE B4 86 137 -28 7 801 26 0 0 0 chr6 28412409 28412435 -121104602 + AT_rich Low_complexity Low_complexity 1 26 0 7 801 735 231 143 0 chr6 28413219 28413401 -121103636 - B3 SINE B2 -5 211 4 7 801 189 0 0 0 chr6 28413524 28413545 -121103492 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 801 1192 56 0 14 chr6 28413545 28413691 -121103346 - B1_Mus1 SINE Alu -2 146 3 7 801 855 281 22 22 chr6 28414327 28414603 -121102434 - B4A SINE B4 -13 279 4 7 801 243 88 0 0 chr6 28415501 28415535 -121101502 + (A)n Simple_repeat Simple_repeat 1 34 0 7 801 5036 62 12 9 chr6 28415620 28416272 -121100765 + L1Md_F2 LINE L1 5917 6570 -12 7 801 1608 37 16 0 chr6 28416463 28416652 -121100385 + B2_Mm1a SINE B2 2 193 0 7 801 1505 38 43 0 chr6 28416690 28416874 -121100163 + B2_Mm1a SINE B2 2 193 0 7 801 182 37 0 36 chr6 28417080 28417108 -121099929 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 7 801 444 241 9 18 chr6 28417597 28417711 -121099326 - PB1D10 SINE Alu -2 115 3 7 801 289 211 47 6 chr6 28418124 28418203 -121098834 - MIRc SINE MIR -46 162 83 7 801 21 26 0 26 chr6 28418486 28418500 -121098537 + AT_rich Low_complexity Low_complexity 1 14 0 7 801 1275 34 0 0 chr6 28418500 28418647 -121098390 + B1_Mus1 SINE Alu 2 148 0 7 801 21 26 0 26 chr6 28418647 28418671 -121098366 + AT_rich Low_complexity Low_complexity 1 24 0 7 801 409 312 165 25 chr6 28418745 28418982 -121098055 - B4A SINE B4 -22 270 1 7 801 742 58 0 9 chr6 28419098 28419203 -121097834 - B1_Mus2 SINE Alu 0 147 44 7 801 221 332 74 49 chr6 28419277 28419480 -121097557 + L4 LINE RTE 1602 1809 -220 7 801 963 159 154 0 chr6 28419518 28419713 -121097324 - URR1A DNA MER1_type 0 226 2 7 801 224 333 0 0 chr6 28420663 28420732 -121096305 + ID4 SINE ID 3 71 -12 7 801 693 203 35 0 chr6 28420806 28420949 -121096088 + B3A SINE B2 1 148 -50 7 801 822 110 0 0 chr6 28420949 28421095 -121095942 + (CA)n Simple_repeat Simple_repeat 1 146 0 7 801 525 256 202 36 chr6 28421305 28421552 -121095485 - B4 SINE B4 0 292 5 7 801 961 102 0 35 chr6 28421596 28421738 -121095299 - B1_Mur4 SINE Alu -12 138 2 7 801 395 338 70 42 chr6 28421752 28422083 -121094954 + ERVL-B4-int LTR ERVL 57 396 -5318 7 801 1052 347 51 21 chr6 28422071 28422604 -121094433 + ERVL-B4-int LTR ERVL 3033 3581 -2133 7 801 23 0 0 0 chr6 28423144 28423167 -121093870 + AT_rich Low_complexity Low_complexity 1 23 0 7 801 2129 134 31 24 chr6 28423167 28423550 -121093487 - ORR1B1 LTR MaLR -8 386 1 7 801 1008 219 49 0 chr6 28423736 28423941 -121093096 + B3 SINE B2 2 216 0 7 801 690 292 37 16 chr6 28424095 28424283 -121092754 - ID_B1 SINE B4 -32 192 1 7 801 657 216 60 0 chr6 28424291 28424425 -121092612 - B1F SINE Alu -2 147 6 7 801 456 240 111 44 chr6 28425721 28425856 -121091181 - B1F2 SINE Alu -1 148 5 7 801 255 98 0 0 chr6 28425860 28425894 -121091143 + (TCC)n Simple_repeat Simple_repeat 1 34 0 7 801 1182 82 0 0 chr6 28425894 28426041 -121090996 - B1_Mus1 SINE Alu 0 148 2 7 801 255 98 0 0 chr6 28426041 28426047 -121090990 + (TCC)n Simple_repeat Simple_repeat 1 6 0 7 801 451 235 49 0 chr6 28426096 28426198 -121090839 - B1F SINE Alu -1 148 42 7 801 351 0 0 0 chr6 28426312 28426351 -121090686 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 801 1180 75 0 0 chr6 28426593 28426740 -121090297 + B1_Mus2 SINE Alu 1 147 0 7 801 261 75 0 0 chr6 28426784 28426824 -121090213 + (A)n Simple_repeat Simple_repeat 1 40 0 7 801 851 296 64 35 chr6 28426841 28426987 -121090050 + RMER1A Other Other 115 265 -765 7 801 932 99 42 7 chr6 28426987 28427130 -121089907 + B1_Mus1 SINE Alu 1 148 0 7 801 851 296 64 35 chr6 28427130 28427295 -121089742 + RMER1A Other Other 266 435 -595 7 801 4077 159 66 4 chr6 28427262 28427977 -121089060 + RMER1A Other Other 272 1030 0 7 801 583 261 103 0 chr6 28428030 28428214 -121088823 - MER3 DNA MER1_type -6 203 1 7 801 579 270 13 26 chr6 28428706 28428862 -121088175 - RSINE1 SINE B4 0 165 12 7 801 201 245 0 20 chr6 28429445 28429495 -121087542 - L2 LINE L2 -2908 511 463 7 801 21 0 0 0 chr6 28431171 28431192 -121085845 + AT_rich Low_complexity Low_complexity 1 21 0 7 801 222 364 48 27 chr6 28431194 28431341 -121085696 - MIR3 SINE MIR -27 181 32 7 801 491 252 59 75 chr6 28431687 28431940 -121085097 + B4A SINE B4 1 249 -43 7 801 1032 113 24 0 chr6 28432048 28432216 -121084821 - B2_Mm2 SINE B2 -23 172 1 7 801 21 0 0 0 chr6 28432503 28432524 -121084513 + AT_rich Low_complexity Low_complexity 1 21 0 7 801 216 298 40 88 chr6 28432701 28432826 -121084211 - MIRb SINE MIR -110 158 40 7 801 204 135 0 0 chr6 28433535 28433572 -121083465 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 801 340 285 114 8 chr6 28434628 28434759 -121082278 - ID_B1 SINE B4 0 224 80 7 801 389 217 58 80 chr6 28435102 28435230 -121081807 - PB1D7 SINE Alu 0 149 1 7 801 202 286 143 45 chr6 28435403 28435557 -121081480 - L2a LINE L2 -226 3200 3032 7 801 213 65 0 0 chr6 28436146 28436177 -121080860 + (TGG)n Simple_repeat Simple_repeat 2 32 0 7 801 281 306 46 0 chr6 28436450 28436552 -121080485 - PB1D10 SINE Alu 0 117 14 7 801 360 0 0 0 chr6 28436924 28436964 -121080073 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 801 260 328 155 5 chr6 28438263 28438450 -121078587 - CR1_Mam LINE CR1 -467 1737 1523 7 801 189 147 0 0 chr6 28438509 28438543 -121078494 + (T)n Simple_repeat Simple_repeat 1 34 0 7 801 305 284 23 0 chr6 28438625 28438713 -121078324 - ID_B1 SINE B4 -130 94 5 7 801 552 30 0 0 chr6 28438713 28438779 -121078258 + (TCCC)n Simple_repeat Simple_repeat 4 69 0 7 801 1664 31 0 0 chr6 28438800 28438991 -121078046 - B2_Mm1a SINE B2 0 193 3 7 801 653 211 37 8 chr6 28438991 28439125 -121077912 - B1_Mur3 SINE Alu -11 138 1 7 801 439 242 11 0 chr6 28439505 28439600 -121077437 + RSINE1 SINE B4 35 130 -35 7 801 189 0 0 0 chr6 28439609 28439630 -121077407 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 801 265 325 60 0 chr6 28439633 28439716 -121077321 + RSINE1 SINE B4 75 162 -3 7 801 934 270 67 15 chr6 28439721 28440138 -121076899 - L1MA4 LINE L1 -374 5926 5471 7 801 592 166 184 30 chr6 28440141 28440309 -121076728 - B3A SINE B2 0 198 5 7 801 355 140 0 0 chr6 28440323 28440380 -121076657 - ID_B1 SINE B4 -8 216 160 7 801 941 54 8 0 chr6 28442035 28442165 -121074872 - B1_Mm SINE Alu 0 147 17 7 802 362 304 92 21 chr6 28442718 28442859 -121074178 + MER21B LTR ERV1 342 492 -371 7 802 899 236 9 33 chr6 28442993 28443203 -121073834 - B3 SINE B2 -6 210 6 7 802 355 237 13 0 chr6 28443200 28443276 -121073761 - B4A SINE B4 -195 97 21 7 802 853 118 15 0 chr6 28443291 28443426 -121073611 - B1_Mus1 SINE Alu 0 148 12 7 802 19315 90 8 2 chr6 28443459 28446888 -121070149 + L1_Mus1 LINE L1 3116 6567 0 7 802 22 0 0 0 chr6 28446888 28446910 -121070127 + AT_rich Low_complexity Low_complexity 1 22 0 7 802 759 185 142 5 chr6 28447184 28447374 -121069663 + B3 SINE B2 1 216 0 7 802 22 35 0 0 chr6 28448376 28448405 -121068632 + AT_rich Low_complexity Low_complexity 1 29 0 7 802 212 296 69 14 chr6 28448425 28448497 -121068540 - L2b LINE L2 -47 3328 3253 7 802 494 189 72 0 chr6 28448642 28448765 -121068272 - MER5A1 DNA MER1_type -8 181 25 7 802 650 268 0 0 chr6 28448976 28449118 -121067919 - B3 SINE B2 -7 209 68 7 802 1155 215 126 66 chr6 28449355 28449704 -121067333 - ORR1D2 LTR MaLR 0 370 1 7 802 972 107 85 63 chr6 28449895 28450084 -121066953 - B2_Mm1a SINE B2 0 193 1 7 802 973 30 0 22 chr6 28450387 28450523 -121066514 + B2_Mm1a SINE B2 61 193 0 7 802 183 42 0 0 chr6 28450972 28450996 -121066041 + (A)n Simple_repeat Simple_repeat 1 24 0 7 802 722 223 303 62 chr6 28451033 28451373 -121065664 - Lx8 LINE L1 -877 6596 6175 7 802 438 175 132 28 chr6 28451456 28451562 -121065475 - ID_B1 SINE B4 -7 217 101 7 802 736 144 129 0 chr6 28451637 28451769 -121065268 - B1_Mur2 SINE Alu 0 149 1 7 802 375 339 16 67 chr6 28451917 28452096 -121064941 + MER82 DNA MER2_type 12 179 -474 7 802 629 221 139 44 chr6 28452096 28452276 -121064761 - B3A SINE B2 0 198 2 7 802 375 339 16 67 chr6 28452276 28452349 -121064688 + MER82 DNA MER2_type 180 251 -402 7 802 25 65 0 0 chr6 28452349 28452395 -121064642 + AT_rich Low_complexity Low_complexity 1 46 0 7 802 1015 289 56 37 chr6 28452439 28452871 -121064166 + MER82 DNA MER2_type 189 628 -25 7 802 328 242 0 0 chr6 28452896 28452958 -121064079 - ID4_ SINE ID -1 82 21 7 802 408 278 204 70 chr6 28452963 28453419 -121063618 - L1MC4 LINE L1 -197 7845 7329 8 802 382 252 167 35 chr6 28453606 28453750 -121063287 - RSINE1 SINE B4 0 165 3 8 802 694 176 0 16 chr6 28454065 28454192 -121062845 - B3 SINE B2 -86 130 6 8 802 216 97 0 0 chr6 28454303 28454334 -121062703 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 8 802 1037 65 29 14 chr6 28454337 28454477 -121062560 - B1_Mus1 SINE Alu -5 143 2 8 802 271 316 17 9 chr6 28454505 28454620 -121062417 - L1MC4 LINE L1 -1142 6900 6785 8 802 1198 41 0 0 chr6 28454973 28455118 -121061919 - B1_Mus2 SINE Alu -1 146 2 8 802 270 0 0 0 chr6 28455182 28455212 -121061825 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 8 802 2461 129 55 26 chr6 28455960 28456413 -121060624 + RMER4A LTR ERVK 1 466 0 8 802 429 120 165 120 chr6 28456415 28456548 -121060489 + RMER4A LTR ERVK 308 446 -20 8 802 1467 215 219 2 chr6 28456573 28457057 -121059980 - Lx9 LINE L1 -2 7642 7054 8 802 413 280 86 26 chr6 28458411 28458679 -121058358 - L1M4 LINE L1 -1031 5115 4832 8 802 331 299 39 23 chr6 28459569 28459699 -121057338 + L2a LINE L2 3279 3410 -16 8 802 201 74 0 0 chr6 28459710 28459737 -121057300 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 8 802 838 219 136 37 chr6 28460341 28460583 -121056454 + B4A SINE B4 11 276 -16 8 802 354 276 83 32 chr6 28460585 28460776 -121056261 + B3A SINE B2 12 216 0 8 802 762 146 7 27 chr6 28460958 28461106 -121055931 + B1_Mur4 SINE Alu 6 150 0 8 802 236 250 130 24 chr6 28461154 28461277 -121055760 + L1M5 LINE L1 5757 5892 -348 8 802 1652 120 131 12 chr6 28461442 28461762 -121055275 - ORR1B2 LTR MaLR -8 359 2 8 802 186 278 56 0 chr6 28462672 28462744 -121054293 - L2a LINE L2 0 3426 3351 8 802 875 309 35 10 chr6 28463177 28463465 -121053572 - MTE2a LTR MaLR -46 333 39 8 802 299 242 0 60 chr6 28463753 28463841 -121053196 - ID4_ SINE ID -56 96 16 8 802 727 247 47 26 chr6 28463881 28464072 -121052965 - ID_B1 SINE B4 -5 219 25 8 802 256 303 15 0 chr6 28464015 28464081 -121052956 - ID4_ SINE ID -2 81 15 8 802 424 245 137 20 chr6 28464172 28464318 -121052719 - RSINE1 SINE B4 0 165 3 8 802 212 307 68 19 chr6 28464941 28465044 -121051993 + MIRb SINE MIR 159 266 -2 8 802 433 209 191 0 chr6 28465606 28465716 -121051321 - B1_Mur1 SINE Alu -14 135 5 8 802 337 241 0 24 chr6 28466020 28466105 -121050932 - Lx9 LINE L1 -178 7466 7384 8 802 225 0 0 0 chr6 28466556 28466581 -121050456 + (T)n Simple_repeat Simple_repeat 1 25 0 8 802 474 281 103 38 chr6 28468654 28468839 -121048198 + RMER30 DNA MER1_type 5 201 -1 8 802 453 36 0 0 chr6 28469099 28469154 -121047883 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 802 870 11 29 0 chr6 28469171 28469297 -121047740 + B1_Mus1 SINE Alu 2 142 -6 8 802 197 33 33 0 chr6 28469299 28469329 -121047708 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 8 802 184 303 152 27 chr6 28470667 28470779 -121046258 + MIRb SINE MIR 20 145 -123 8 802 858 41 189 8 chr6 28470793 28470915 -121046122 - B1_Mus1 SINE Alu -2 146 3 8 802 1337 50 37 37 chr6 28470960 28471147 -121045890 + B2_Mm2 SINE B2 1 187 -8 8 802 423 170 123 0 chr6 28471649 28471749 -121045288 - B1F2 SINE Alu 0 117 10 8 802 213 265 0 0 chr6 28471706 28471755 -121045282 - B4A SINE B4 -155 137 89 8 802 1076 292 20 48 chr6 28472017 28472369 -121044668 - MTEa LTR MaLR -36 343 2 8 802 315 71 0 0 chr6 28474036 28474078 -121042959 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 8 802 236 266 202 0 chr6 28474148 28474257 -121042780 - L2a LINE L2 -14 3412 3282 8 802 23 0 0 0 chr6 28474970 28474993 -121042044 + AT_rich Low_complexity Low_complexity 1 23 0 8 802 23 0 0 0 chr6 28478152 28478175 -121038862 + AT_rich Low_complexity Low_complexity 1 23 0 8 802 495 231 107 20 chr6 28479212 28479362 -121037675 - RSINE1 SINE B4 0 165 3 8 802 189 171 0 0 chr6 28480689 28480724 -121036313 + CT-rich Low_complexity Low_complexity 2 36 0 8 802 612 187 8 5 chr6 28481109 28481233 -121035804 - PB1D9 SINE Alu -21 126 9 8 802 350 252 165 15 chr6 28481118 28481251 -121035786 - B4 SINE B4 -63 229 77 8 802 1359 67 0 0 chr6 28481616 28481795 -121035242 + (TG)n Simple_repeat Simple_repeat 1 179 0 8 802 1464 44 0 0 chr6 28481808 28482060 -121034977 + (TG)n Simple_repeat Simple_repeat 1 252 0 8 802 25 0 0 0 chr6 28482669 28482694 -121034343 + GC_rich Low_complexity Low_complexity 1 25 0 8 802 219 69 0 0 chr6 28483203 28483232 -121033805 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 8 802 188 135 27 0 chr6 28483298 28483335 -121033702 + C-rich Low_complexity Low_complexity 2 39 0 8 802 180 0 0 0 chr6 28483524 28483544 -121033493 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 8 802 1174 93 52 0 chr6 28483669 28483841 -121033196 - B2_Mm2 SINE B2 -14 181 1 8 802 249 307 79 0 chr6 28484117 28484231 -121032806 + MER58B DNA MER1_type 113 235 -106 8 802 553 268 36 7 chr6 28484240 28484379 -121032658 - B1_Mur1 SINE Alu 0 149 7 8 802 225 267 70 79 chr6 28484283 28484397 -121032640 - MT2B LTR ERVL -341 260 148 8 802 287 281 96 9 chr6 28484487 28484602 -121032435 - ORR1E LTR MaLR -2 377 253 8 802 309 349 44 83 chr6 28484651 28484879 -121032158 - ORR1E LTR MaLR -144 226 8 8 802 213 274 0 0 chr6 28485062 28485113 -121031924 - B1F2 SINE Alu -95 54 4 8 802 472 356 127 34 chr6 28485142 28485735 -121031302 - HAL1 LINE L1 -161 2346 1699 8 802 434 238 0 19 chr6 28486200 28486303 -121030734 - PB1D10 SINE Alu 0 117 17 8 802 299 292 33 46 chr6 28486439 28486590 -121030447 - HAL1 LINE L1 -1571 936 788 8 802 246 271 0 0 chr6 28487019 28487078 -121029959 - L1M3 LINE L1 -305 5819 5761 8 802 226 274 87 19 chr6 28487247 28487351 -121029686 - MER58B DNA MER1_type -1 340 230 8 802 315 257 0 0 chr6 28487375 28487445 -121029592 + ID4_ SINE ID 1 70 -13 8 802 227 205 47 93 chr6 28488586 28488672 -121028365 - L1M3 LINE L1 -800 5383 5302 8 802 911 298 135 17 chr6 28488687 28489333 -121027704 - L1M3 LINE L1 -806 5334 4613 8 802 233 235 175 10 chr6 28489512 28489615 -121027422 - MTE2b-int LTR MaLR -1458 122 3 8 802 415 270 141 61 chr6 28489618 28489831 -121027206 - MTE2b LTR MaLR -2 377 148 8 802 474 253 7 40 chr6 28489877 28489893 -121027144 - MTE2b LTR MaLR -250 169 1 8 802 361 234 76 61 chr6 28489893 28490025 -121027012 - MT2A LTR ERVL -399 134 1 8 802 551 289 11 57 chr6 28490320 28490496 -121026541 - B4A SINE B4 -124 168 1 8 802 258 176 233 31 chr6 28490507 28490636 -121026401 - L1M3 LINE L1 -1678 4462 4308 8 802 503 244 206 31 chr6 28491042 28491367 -121025670 - L1MC3 LINE L1 -20 7765 7384 8 802 3505 25 2 0 chr6 28494486 28494881 -121022156 - MTA_Mm LTR MaLR 0 396 1 8 802 330 321 0 44 chr6 28495064 28495201 -121021836 - B1_Mus2 SINE Alu -16 131 1 8 802 953 284 49 46 chr6 28495612 28495962 -121021075 - ORR1D2 LTR MaLR 0 370 20 8 802 384 119 0 0 chr6 28497736 28497795 -121019242 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 802 360 176 0 0 chr6 28498010 28498078 -121018959 + (TA)n Simple_repeat Simple_repeat 2 69 0 8 802 595 210 0 61 chr6 28499179 28499311 -121017726 + B1_Mur2 SINE Alu 4 127 -22 8 802 261 0 0 0 chr6 28499330 28499359 -121017678 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 802 427 356 61 39 chr6 28499415 28499596 -121017441 - MER91A DNA Tip100 -10 186 2 8 802 237 108 0 0 chr6 28503699 28503736 -121013301 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 802 198 0 0 0 chr6 28506306 28506328 -121010709 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2 802 351 0 0 0 chr6 28506332 28506371 -121010666 + (T)n Simple_repeat Simple_repeat 1 39 0 3 802 469 241 70 26 chr6 28506371 28506486 -121010551 - PB1D9 SINE Alu 0 120 1 4 802 225 0 0 0 chr6 28507235 28507260 -121009777 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 802 180 0 0 0 chr6 28507260 28507279 -121009758 + (GA)n Simple_repeat Simple_repeat 1 20 0 6 802 242 350 81 0 chr6 28508604 28508727 -121008310 - MamRep605 Unknown Unknown -213 663 531 7 802 1340 88 60 5 chr6 28508733 28508917 -121008120 - B2_Mm2 SINE B2 0 195 2 8 802 313 218 0 52 chr6 28509430 28509488 -121007549 - ID4 SINE ID 0 83 29 9 802 267 202 126 42 chr6 28509756 28509875 -121007162 - L1ME4a LINE L1 -2 6122 5994 1 802 478 213 8 23 chr6 28509934 28510064 -121006973 - L1ME4a LINE L1 -279 5845 5718 1 802 1993 92 43 7 chr6 28511137 28511442 -121005595 - ORR1A3 LTR MaLR 0 326 11 1 802 1483 71 6 0 chr6 28513576 28513759 -121003278 - L1_Mus1 LINE L1 -2 6565 6382 1 802 325 177 45 43 chr6 28514195 28514294 -121002743 + ID4 SINE ID 9 103 -49 1 802 538 225 99 8 chr6 28515323 28515444 -121001593 - B1_Mur2 SINE Alu -14 135 4 1 802 318 167 0 0 chr6 28519553 28519613 -120997424 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 802 643 124 205 47 chr6 28519651 28519778 -120997259 - B1_Mus2 SINE Alu 0 147 1 1 802 22 0 0 0 chr6 28520155 28520177 -120996860 + AT_rich Low_complexity Low_complexity 1 22 0 1 802 581 264 77 35 chr6 28520820 28520989 -120996048 + B3A SINE B2 1 176 -22 1 802 448 265 188 32 chr6 28521711 28521955 -120995082 + B4A SINE B4 1 282 -10 1 802 27 0 0 0 chr6 28525210 28525237 -120991800 + AT_rich Low_complexity Low_complexity 1 27 0 2 802 2096 38 0 0 chr6 28525433 28525668 -120991369 - L1Md_T LINE L1 0 6582 6348 2 802 365 78 0 45 chr6 28525668 28525735 -120991302 + (A)n Simple_repeat Simple_repeat 1 64 0 2 802 966 122 118 34 chr6 28528088 28528266 -120988771 - B2_Mm2 SINE B2 0 195 3 2 802 607 316 93 21 chr6 28529068 28529401 -120987636 - L1ME3 LINE L1 -76 6086 5730 2 802 1223 69 0 0 chr6 28529526 28529670 -120987367 - B1_Mus2 SINE Alu -3 144 1 2 802 284 229 100 125 chr6 28530003 28530123 -120986914 - B1_Mur1 SINE Alu -3 146 1 2 802 267 152 0 0 chr6 28531102 28531148 -120985889 + CT-rich Low_complexity Low_complexity 3 48 0 2 802 645 293 117 40 chr6 28531201 28531553 -120985484 - L1MC4 LINE L1 -971 7071 6693 2 802 270 0 0 0 chr6 28531556 28531586 -120985451 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 802 363 60 0 0 chr6 28531797 28531847 -120985190 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 802 255 253 155 12 chr6 28531848 28531932 -120985105 + RMER30 DNA MER1_type 103 198 -4 3 802 423 98 0 0 chr6 28532024 28532085 -120984952 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 802 405 0 0 0 chr6 28532389 28532434 -120984603 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 802 908 222 48 0 chr6 28532501 28532690 -120984347 - ID_B1 SINE B4 -22 202 5 3 802 36 0 0 0 chr6 28533907 28533943 -120983094 + AT_rich Low_complexity Low_complexity 1 36 0 3 802 445 297 50 25 chr6 28534069 28534228 -120982809 - MLT1B LTR MaLR -225 165 3 3 802 288 298 113 80 chr6 28534299 28534536 -120982501 + B4 SINE B4 48 292 0 3 802 416 276 122 80 chr6 28535105 28535507 -120981530 - Charlie1a DNA MER1_type -1 1454 1036 3 802 249 33 0 0 chr6 28537395 28537425 -120979612 + (T)n Simple_repeat Simple_repeat 1 30 0 3 802 818 239 208 42 chr6 28538070 28538406 -120978631 + MLT1A1 LTR MaLR 1 392 -16 4 802 194 0 39 0 chr6 28540201 28540227 -120976810 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 802 1187 65 0 0 chr6 28540227 28540365 -120976672 - B1_Mus2 SINE Alu -9 138 1 4 802 408 20 0 0 chr6 28540391 28540440 -120976597 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 802 332 324 41 7 chr6 28540458 28540604 -120976433 - B3A SINE B2 -38 160 10 4 802 261 183 0 244 chr6 28540791 28540914 -120976123 + RSINE1 SINE B4 73 165 0 4 802 264 30 0 0 chr6 28544225 28544258 -120972779 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 802 418 218 304 35 chr6 28544630 28544801 -120972236 + ID_B1 SINE B4 6 222 -2 4 802 402 266 165 86 chr6 28544893 28545148 -120971889 + MLT1C LTR MaLR 154 428 -39 4 802 310 367 67 52 chr6 28545843 28546053 -120970984 - B4 SINE B4 -78 214 2 4 802 344 243 191 52 chr6 28546209 28546461 -120970576 - L1ME1 LINE L1 -158 6021 5735 5 802 507 200 43 9 chr6 28546527 28546643 -120970394 - Lx9 LINE L1 -9 7635 7516 5 802 3272 51 54 0 chr6 28546645 28547035 -120970002 - RLTR10A LTR ERVK 0 411 1 5 802 447 106 0 0 chr6 28547038 28547104 -120969933 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 802 2602 185 22 4 chr6 28547114 28547612 -120969425 - Lx9 LINE L1 -180 7464 6958 5 802 210 317 47 47 chr6 28551327 28551433 -120965604 + L2a LINE L2 3281 3386 -40 5 802 24 0 0 0 chr6 28551714 28551738 -120965299 + AT_rich Low_complexity Low_complexity 1 24 0 5 802 230 312 188 17 chr6 28552444 28552620 -120964417 + L3 LINE CR1 4283 4488 -1 5 802 207 0 0 0 chr6 28552870 28552893 -120964144 + (ATTG)n Simple_repeat Simple_repeat 3 25 0 5 802 185 0 40 0 chr6 28553183 28553208 -120963829 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 802 246 365 14 0 chr6 28553753 28553827 -120963210 - ID4 SINE ID -8 75 1 5 802 236 253 61 37 chr6 28555145 28555227 -120961810 - B1_Mur4 SINE Alu -57 93 10 6 802 898 200 63 24 chr6 28555235 28555440 -120961597 - B3 SINE B2 0 216 4 6 802 243 0 0 0 chr6 28555465 28555492 -120961545 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 802 1193 56 14 0 chr6 28555492 28555634 -120961403 - B1_Mm SINE Alu -3 144 1 6 802 297 297 43 32 chr6 28555745 28555839 -120961198 + RMER30 DNA MER1_type 8 102 -100 6 802 337 292 108 64 chr6 28558804 28558961 -120958076 - RSINE1 SINE B4 0 165 2 6 802 21 0 0 0 chr6 28559313 28559334 -120957703 + AT_rich Low_complexity Low_complexity 1 21 0 6 802 336 205 80 57 chr6 28560154 28560242 -120956795 - MIR3 SINE MIR -21 187 98 6 802 320 261 43 21 chr6 28560240 28560334 -120956703 - L2a LINE L2 -5 3421 3326 6 802 193 161 0 0 chr6 28560858 28560889 -120956148 + L2c LINE L2 3105 3135 -252 6 802 386 247 31 31 chr6 28562725 28562821 -120954216 - PB1D9 SINE Alu -1 119 24 7 802 299 214 174 33 chr6 28563207 28563328 -120953709 - L1MB2 LINE L1 -55 6116 5979 7 802 234 0 0 0 chr6 28564820 28564846 -120952191 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 802 453 90 0 0 chr6 28564846 28564913 -120952124 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 802 28 0 0 0 chr6 28565368 28565396 -120951641 + AT_rich Low_complexity Low_complexity 1 28 0 7 802 377 208 39 0 chr6 28565924 28566001 -120951036 - ID4_ SINE ID -1 82 3 7 802 213 139 0 27 chr6 28566601 28566638 -120950399 + T-rich Low_complexity Low_complexity 3 38 0 7 802 380 296 0 44 chr6 28566863 28566976 -120950061 + PB1D10 SINE Alu 5 112 -5 7 802 1153 41 6 93 chr6 28567299 28567460 -120949577 - B1_Mus2 SINE Alu 0 147 1 7 802 459 0 0 0 chr6 28568121 28568172 -120948865 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 802 324 0 0 0 chr6 28570418 28570454 -120946583 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 802 468 0 0 0 chr6 28570454 28570505 -120946532 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 100 304 237 0 50 chr6 28573664 28573744 -120943293 + ID4 SINE ID 8 83 0 8 803 388 277 74 47 chr6 28573865 28574013 -120943024 - RMER15 LTR ERVL -91 484 333 8 803 342 0 0 0 chr6 28574453 28574491 -120942546 + (T)n Simple_repeat Simple_repeat 1 38 0 8 803 294 179 0 0 chr6 28575712 28575768 -120941269 + (TATG)n Simple_repeat Simple_repeat 3 58 0 8 803 282 353 98 0 chr6 28577196 28577298 -120939739 - ID_B1 SINE B4 -26 198 87 8 803 22 0 0 0 chr6 28577326 28577348 -120939689 + AT_rich Low_complexity Low_complexity 1 22 0 8 803 589 282 8 0 chr6 28577361 28577492 -120939545 + ID_B1 SINE B4 88 219 -5 8 803 387 0 0 0 chr6 28577582 28577625 -120939412 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 803 237 108 0 0 chr6 28579707 28579744 -120937293 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 9 803 198 0 0 0 chr6 28579745 28579767 -120937270 + (CCTG)n Simple_repeat Simple_repeat 1 22 0 9 803 245 242 0 43 chr6 28580635 28580704 -120936333 + MER2 DNA MER2_type 197 262 -83 9 803 1225 48 0 0 chr6 28581461 28581607 -120935430 - B1_Mus2 SINE Alu 0 147 2 9 803 648 221 7 7 chr6 28582187 28582324 -120934713 - B1_Mur1 SINE Alu -2 147 11 9 803 387 183 107 30 chr6 28582409 28582578 -120934459 - RMER17C LTR ERVK -136 274 93 9 803 198 0 0 0 chr6 28584804 28584826 -120932211 + (TTG)n Simple_repeat Simple_repeat 3 24 0 9 803 899 277 109 4 chr6 28585250 28585507 -120931530 - B4A SINE B4 0 292 9 9 803 411 325 57 42 chr6 28585653 28585916 -120931121 + MLT1C LTR MaLR 201 467 0 9 803 405 261 0 0 chr6 28589322 28589475 -120927562 + (CA)n Simple_repeat Simple_repeat 2 154 0 9 803 231 258 44 29 chr6 28589826 28589894 -120927143 - ID4 SINE ID -13 70 2 1 803 221 296 0 36 chr6 28590490 28590574 -120926463 + CT-rich Low_complexity Low_complexity 3 83 0 1 803 23 54 0 0 chr6 28591377 28591414 -120925623 + AT_rich Low_complexity Low_complexity 1 37 0 1 803 334 302 41 10 chr6 28592638 28592735 -120924302 + MIRb SINE MIR 160 259 -9 1 803 415 256 22 74 chr6 28594289 28594424 -120922613 - B4A SINE B4 -16 276 149 1 803 24 32 0 0 chr6 28594443 28594474 -120922563 + AT_rich Low_complexity Low_complexity 1 31 0 1 803 751 217 14 0 chr6 28594474 28594617 -120922420 - B1_Mur4 SINE Alu 0 150 6 1 803 1130 90 0 7 chr6 28594836 28594982 -120922055 + B1_Mus1 SINE Alu 4 148 0 1 803 211 238 24 24 chr6 28595445 28595527 -120921510 + T-rich Low_complexity Low_complexity 3 84 0 1 803 42092 5 0 0 chr6 28595577 28602135 -120914902 - L1Md_A LINE L1 0 6582 25 1 803 652 211 18 0 chr6 28603940 28604054 -120912983 + B3A SINE B2 5 120 -78 1 803 475 299 75 0 chr6 28604242 28604389 -120912648 + RSINE1 SINE B4 3 160 -5 1 803 826 219 106 11 chr6 28604412 28604601 -120912436 - B3 SINE B2 -6 210 4 1 803 346 125 0 24 chr6 28604701 28604783 -120912254 + (CAAT)n Simple_repeat Simple_repeat 1 80 0 1 803 471 302 19 47 chr6 28605535 28605750 -120911287 + L1MB7 LINE L1 5935 6143 -41 1 803 946 272 106 32 chr6 28608126 28608590 -120908447 - L1MB2 LINE L1 -102 6069 5572 1 803 295 233 0 48 chr6 28608706 28608769 -120908268 + ID4 SINE ID 11 70 -13 1 803 865 161 191 43 chr6 28609836 28610024 -120907013 + B3 SINE B2 1 216 0 1 803 31 0 0 0 chr6 28610115 28610146 -120906891 + AT_rich Low_complexity Low_complexity 1 31 0 1 803 488 264 153 13 chr6 28611653 28611810 -120905227 + B3A SINE B2 8 186 -12 1 803 324 250 58 0 chr6 28611873 28611977 -120905060 + MER33 DNA MER1_type 21 130 -194 1 803 212 191 0 0 chr6 28612845 28612887 -120904150 - MIR SINE MIR -11 251 210 1 803 1535 279 118 17 chr6 28615154 28615755 -120901282 - Lx8 LINE L1 0 7473 6812 1 803 973 234 58 18 chr6 28616297 28616575 -120900462 - B4A SINE B4 -2 290 2 1 803 461 266 0 9 chr6 28617420 28617534 -120899503 - PB1D9 SINE Alu -7 113 1 1 803 228 301 48 12 chr6 28617550 28617634 -120899403 - L1MC3 LINE L1 -7 6326 6240 1 803 576 286 87 32 chr6 28617722 28618118 -120898919 - L1MC3 LINE L1 -1920 5865 5447 1 803 316 277 168 12 chr6 28618275 28618436 -120898601 - L1MC3 LINE L1 -764 5382 5197 1 803 322 254 100 0 chr6 28619840 28619950 -120897087 + L4 LINE RTE 702 822 -1207 1 803 688 257 85 20 chr6 28620251 28620545 -120896492 - L1M2 LINE L1 -723 5574 5262 1 803 1203 43 0 0 chr6 28620608 28620749 -120896288 + B1_Mus1 SINE Alu 2 142 -6 1 803 255 31 0 0 chr6 28620751 28620783 -120896254 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 803 198 0 0 0 chr6 28621011 28621033 -120896004 + (TTGG)n Simple_repeat Simple_repeat 3 24 0 1 803 417 231 73 16 chr6 28621044 28621167 -120895870 - RSINE1 SINE B4 -32 133 4 1 803 505 240 53 33 chr6 28621534 28621685 -120895352 - RSINE1 SINE B4 0 165 12 1 803 1068 73 15 0 chr6 28621781 28621917 -120895120 + B1_Mus2 SINE Alu 1 138 -9 1 803 180 0 0 0 chr6 28621917 28621937 -120895100 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 803 1655 36 0 0 chr6 28623583 28623775 -120893262 - B2_Mm1a SINE B2 0 193 2 1 803 229 0 83 0 chr6 28624573 28624609 -120892428 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 803 810 17 42 25 chr6 28624609 28624727 -120892310 - B1_Mm SINE Alu -10 137 18 1 803 876 219 42 42 chr6 28624905 28625120 -120891917 - B3 SINE B2 -1 215 1 1 803 388 319 109 14 chr6 28625124 28625323 -120891714 - B3A SINE B2 -1 215 5 1 803 242 330 33 92 chr6 28625384 28625439 -120891598 - ID_B1 SINE B4 -20 204 152 1 803 2639 56 0 0 chr6 28625439 28625783 -120891254 - L1_Mus1 LINE L1 0 6567 6244 1 803 242 330 33 92 chr6 28625783 28625846 -120891191 - ID_B1 SINE B4 -73 151 93 1 803 342 254 44 35 chr6 28626926 28627040 -120889997 - PB1D10 SINE Alu 0 117 3 1 803 348 300 30 53 chr6 28628266 28628435 -120888602 + Tigger9a DNA Tigger 329 493 -239 1 803 673 48 0 0 chr6 28629299 28629383 -120887654 - L1Md_F2 LINE L1 -579 6003 5920 1 803 4549 49 4 2 chr6 28629384 28629939 -120887098 + L1Md_F2 LINE L1 6024 6579 -3 1 803 623 196 7 0 chr6 28633289 28633427 -120883610 + CT-rich Low_complexity Low_complexity 2 140 0 1 803 267 235 103 0 chr6 28633600 28633668 -120883369 - PB1D9 SINE Alu -36 84 10 1 803 210 308 99 0 chr6 28633668 28633691 -120883346 - B4 SINE B4 -123 169 70 1 803 693 280 64 0 chr6 28634501 28634737 -120882300 - MER2 DNA MER2_type -94 251 1 1 803 748 108 131 0 chr6 28634904 28635034 -120882003 + B1_Mus1 SINE Alu 2 148 0 1 803 576 106 0 0 chr6 28635055 28635140 -120881897 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 803 301 242 0 0 chr6 28636929 28636991 -120880046 - Cheshire DNA MER1_type -1 2419 2358 1 803 351 0 0 0 chr6 28638432 28638471 -120878566 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 803 275 309 127 45 chr6 28641337 28641581 -120875456 - L2a LINE L2 -21 3405 3142 1 803 488 224 48 82 chr6 28641617 28641763 -120875274 + B4 SINE B4 79 219 -73 1 803 1040 43 0 14 chr6 28641632 28641772 -120875265 + B1_Mus2 SINE Alu 10 147 0 1 803 219 88 0 0 chr6 28642510 28642544 -120874493 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 803 888 136 0 0 chr6 28644472 28644619 -120872418 - URR1B DNA MER1_type 0 225 79 1 803 216 344 10 79 chr6 28644704 28644805 -120872232 - PB1D10 SINE Alu -22 95 2 1 803 211 200 32 48 chr6 28646189 28646252 -120870785 - L2a LINE L2 -11 3415 3354 1 803 236 328 16 0 chr6 28646493 28646557 -120870480 + MIRc SINE MIR 17 81 -187 1 803 555 253 84 6 chr6 28647569 28647736 -120869301 + B3A SINE B2 1 180 -18 1 803 204 67 0 0 chr6 28647809 28647839 -120869198 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 803 1219 49 0 0 chr6 28647840 28647984 -120869053 - B1_Mm SINE Alu -2 145 2 1 803 333 211 73 46 chr6 28649383 28649492 -120867545 - PB1D9 SINE Alu -7 113 2 1 803 1088 50 65 0 chr6 28649931 28650070 -120866967 - B1_Mus1 SINE Alu 0 148 1 1 803 1078 246 121 9 chr6 28650713 28651045 -120865992 + MTEb LTR MaLR 9 377 -2 1 803 555 78 0 0 chr6 28651519 28651596 -120865441 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 803 3996 59 5 3 chr6 28652614 28653346 -120863691 - L1VL4 LINE L1 -2374 1185 452 1 803 265 303 49 0 chr6 28653420 28653542 -120863495 + L1MC4 LINE L1 7764 7891 -151 1 803 28 48 0 0 chr6 28654590 28654632 -120862405 + AT_rich Low_complexity Low_complexity 1 42 0 1 803 180 0 0 0 chr6 28656875 28656895 -120860142 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 803 429 203 82 33 chr6 28658274 28658396 -120858641 + B1F SINE Alu 16 143 -6 1 803 330 266 32 0 chr6 28661351 28661445 -120855592 + PB1D10 SINE Alu 19 115 -2 1 803 562 310 0 0 chr6 28661482 28661611 -120855426 - B1_Mur1 SINE Alu -20 129 1 1 803 578 171 9 0 chr6 28662660 28662765 -120854272 - MTD LTR MaLR -33 386 281 1 803 201 39 0 0 chr6 28662835 28662861 -120854176 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 803 1007 109 0 7 chr6 28662862 28663009 -120854028 - B1_Mus2 SINE Alu 0 147 2 1 803 244 320 20 20 chr6 28663011 28663113 -120853924 + B4A SINE B4 17 118 -174 1 803 226 50 0 48 chr6 28663273 28663315 -120853722 + (CACCC)n Simple_repeat Simple_repeat 4 43 0 1 803 2241 133 31 60 chr6 28663553 28663970 -120853067 - MTB_Mm LTR MaLR -2 405 1 1 803 387 0 0 0 chr6 28664098 28664141 -120852896 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 803 489 244 0 25 chr6 28666363 28666481 -120850556 + RSINE1 SINE B4 3 117 -48 1 803 403 251 142 56 chr6 28666856 28667088 -120849949 + L1ME4a LINE L1 5699 5950 -174 1 803 296 170 0 0 chr6 28668642 28668695 -120848342 - B3A SINE B2 -136 62 10 1 803 309 26 0 0 chr6 28668820 28668858 -120848179 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 803 225 0 0 0 chr6 28668858 28668883 -120848154 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 803 1162 215 65 24 chr6 28668891 28669261 -120847776 - RMER17C LTR ERVK -33 377 4 1 803 342 0 0 0 chr6 28671279 28671317 -120845720 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 803 299 266 84 11 chr6 28673573 28673668 -120843369 - RMER15 LTR ERVL -43 532 431 1 803 228 266 16 0 chr6 28675606 28675670 -120841367 - L2a LINE L2 -15 3411 3347 1 803 3245 26 45 0 chr6 28678090 28678469 -120838568 - MTA_Mm LTR MaLR 0 396 1 1 803 321 153 9 29 chr6 28678756 28678833 -120838204 + PB1D9 SINE Alu 44 125 -2 1 803 250 245 114 67 chr6 28679868 28679973 -120837064 - PB1D10 SINE Alu 0 117 8 1 803 208 194 0 82 chr6 28679978 28680051 -120836986 + T-rich Low_complexity Low_complexity 3 69 0 1 803 384 176 0 0 chr6 28680995 28681063 -120835974 - MTC LTR MaLR -353 68 1 1 803 257 378 66 25 chr6 28682411 28682609 -120834428 + MIR SINE MIR 23 228 -34 1 803 470 192 120 40 chr6 28683601 28683726 -120833311 - B1_Mur1 SINE Alu -5 144 10 1 803 28 0 0 0 chr6 28683726 28683754 -120833283 + AT_rich Low_complexity Low_complexity 1 28 0 1 803 239 337 72 21 chr6 28683773 28683870 -120833167 - RSINE1 SINE B4 0 165 64 1 803 311 193 198 33 chr6 28685281 28685372 -120831665 - RSINE1 SINE B4 -55 110 5 2 803 249 308 27 27 chr6 28685374 28685524 -120831513 - L1P5 LINE L1 -667 5489 5340 2 803 305 188 56 111 chr6 28686739 28686753 -120830284 + MT2B LTR ERVL 156 163 -438 2 803 499 217 58 0 chr6 28686753 28686873 -120830164 + B1_Mur1 SINE Alu 4 130 -19 2 803 22 0 0 0 chr6 28687427 28687449 -120829588 + AT_rich Low_complexity Low_complexity 1 22 0 2 803 450 191 100 0 chr6 28687677 28687787 -120829250 - ID_B1 SINE B4 0 224 104 2 803 25 31 0 0 chr6 28688152 28688184 -120828853 + AT_rich Low_complexity Low_complexity 1 32 0 2 803 259 180 0 0 chr6 28688244 28688294 -120828743 - ID_B1 SINE B4 -1 223 174 2 803 214 146 83 0 chr6 28688251 28688299 -120828738 - PB1D9 SINE Alu -8 112 61 2 803 327 333 0 0 chr6 28688316 28688406 -120828631 - ID_B1 SINE B4 -130 94 5 2 803 1889 164 74 25 chr6 28688411 28688804 -120828233 + MTC LTR MaLR 2 413 -8 2 803 354 240 95 58 chr6 28690797 28690934 -120826103 - B1F SINE Alu -3 146 5 2 803 658 148 0 0 chr6 28691035 28691143 -120825894 + B2_Mm1t SINE B2 1 108 -85 2 803 427 205 56 112 chr6 28691839 28691982 -120825055 + MT2B LTR ERVL 130 264 -337 2 803 931 65 0 0 chr6 28691874 28691997 -120825040 + B1_Mus1 SINE Alu 6 128 -20 2 803 220 0 27 54 chr6 28691999 28692036 -120825001 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 803 631 51 42 42 chr6 28692194 28692338 -120824699 + (TTTG)n Simple_repeat Simple_repeat 4 147 0 2 803 1084 89 0 0 chr6 28692338 28692484 -120824553 - B1_Mm SINE Alu 0 147 2 2 803 198 91 0 0 chr6 28693455 28693488 -120823549 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 2 803 270 0 0 0 chr6 28694467 28694497 -120822540 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 803 25 51 0 0 chr6 28694764 28694803 -120822234 + AT_rich Low_complexity Low_complexity 1 39 0 2 803 418 225 142 18 chr6 28697826 28697939 -120819098 + ID_B1 SINE B4 91 217 -7 2 803 326 234 13 0 chr6 28701330 28701407 -120815630 + PB1D7 SINE Alu 15 92 -28 2 803 803 220 88 0 chr6 28702773 28702955 -120814082 + B3 SINE B2 2 199 -17 2 804 558 0 0 0 chr6 28705034 28705096 -120811941 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 804 345 224 59 39 chr6 28705872 28705974 -120811063 + ID_B1 SINE B4 111 214 -10 2 804 354 45 0 0 chr6 28707611 28707655 -120809382 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 2 804 320 313 0 0 chr6 28707976 28708075 -120808962 - MIR SINE MIR -73 189 91 2 804 384 298 65 26 chr6 28709510 28709665 -120807372 + RSINE1 SINE B4 5 165 0 2 804 380 336 16 8 chr6 28710025 28710151 -120806886 - RSINE1 SINE B4 -30 135 9 2 804 232 229 0 67 chr6 28711160 28711235 -120805802 + MT2B LTR ERVL 172 241 -360 2 804 331 197 0 0 chr6 28711177 28711238 -120805799 + PB1D9 SINE Alu 29 89 -31 2 804 258 56 0 0 chr6 28711241 28711277 -120805760 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 804 286 116 0 0 chr6 28711431 28711474 -120805563 - B1_Mur4 SINE Alu -11 139 97 2 804 231 232 0 18 chr6 28711478 28711535 -120805502 + CT-rich Low_complexity Low_complexity 2 57 0 2 804 370 199 127 3 chr6 28711550 28711659 -120805378 - B1_Mus1 SINE Alu -25 124 1 2 804 577 242 8 42 chr6 28713334 28713495 -120803542 + L1MB1 LINE L1 5454 5612 -721 2 804 482 234 28 35 chr6 28713592 28713734 -120803303 + L1MB1 LINE L1 5584 5724 -588 2 804 1679 159 127 14 chr6 28713746 28714171 -120802866 + RMER4B LTR ERVK 84 585 0 2 804 525 290 43 66 chr6 28714172 28714548 -120802489 + L1MB1 LINE L1 5763 6134 -178 2 804 354 305 38 0 chr6 28714553 28714658 -120802379 + PB1D10 SINE Alu 1 109 -8 2 804 429 254 33 17 chr6 28715496 28715616 -120801421 - B1_Mur2 SINE Alu -5 144 23 2 804 884 122 165 6 chr6 28719881 28719916 -120797121 - ORR1D1 LTR MaLR -163 211 168 2 804 333 0 0 0 chr6 28719916 28719953 -120797084 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 804 884 122 165 6 chr6 28719953 28720099 -120796938 - ORR1D1 LTR MaLR -207 167 2 2 804 442 307 60 115 chr6 28722133 28722402 -120794635 - Tigger7 DNA MER2_type 0 2491 2238 2 804 394 220 88 44 chr6 28722378 28722492 -120794545 - Tigger7 DNA MER2_type -2057 434 316 2 804 28 48 0 0 chr6 28722492 28722534 -120794503 + AT_rich Low_complexity Low_complexity 1 42 0 2 804 1026 73 53 35 chr6 28722543 28722616 -120794421 - L1_Mus1 LINE L1 0 6567 6546 2 804 995 52 80 7 chr6 28722616 28722753 -120794284 - B1_Mus2 SINE Alu 0 147 1 2 804 1026 73 53 35 chr6 28722753 28722903 -120794134 - L1_Mus1 LINE L1 -22 6545 6394 2 804 298 246 14 14 chr6 28722904 28722974 -120794063 - Tigger7 DNA MER2_type -2181 310 241 2 804 198 0 0 0 chr6 28723273 28723295 -120793742 + (T)n Simple_repeat Simple_repeat 1 22 0 2 804 1408 178 59 24 chr6 28724296 28724584 -120792453 - Lx5 LINE L1 -3 7047 6750 2 804 1416 198 16 0 chr6 28724580 28724827 -120792210 + Lx5 LINE L1 6491 6741 -309 2 804 285 51 0 0 chr6 28724854 28724893 -120792144 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 804 991 139 166 0 chr6 28725181 28725368 -120791669 - URR1B DNA MER1_type -6 219 2 2 804 198 0 0 0 chr6 28726602 28726624 -120790413 + (TAAG)n Simple_repeat Simple_repeat 3 24 0 2 804 210 71 0 0 chr6 28726869 28726897 -120790140 + (T)n Simple_repeat Simple_repeat 1 28 0 2 804 1049 52 89 0 chr6 28726908 28727043 -120789994 - B1_Mus2 SINE Alu 0 147 1 2 804 490 224 303 0 chr6 28727327 28727492 -120789545 - B3 SINE B2 0 216 2 2 804 252 0 0 0 chr6 28727712 28727740 -120789297 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2 804 208 356 0 0 chr6 28728974 28729033 -120788004 + L3 LINE CR1 4430 4488 -1 2 804 325 289 158 54 chr6 28729419 28729679 -120787358 - B4A SINE B4 -1 291 5 2 804 288 288 147 37 chr6 28730184 28730375 -120786662 - L1ME3A LINE L1 -50 6123 5912 2 804 486 0 0 0 chr6 28733022 28733076 -120783961 + (CTTG)n Simple_repeat Simple_repeat 4 57 0 2 804 317 261 152 43 chr6 28734527 28734691 -120782346 + L3 LINE CR1 4044 4225 -264 2 804 196 300 193 76 chr6 28734698 28735160 -120781877 - L2 LINE L2 -498 2921 2406 2 804 866 249 128 19 chr6 28735470 28735728 -120781309 - MER58B DNA MER1_type -5 336 51 2 804 224 296 0 0 chr6 28735728 28735782 -120781255 + B1_Mur1 SINE Alu 83 136 -13 2 804 288 0 0 0 chr6 28736032 28736064 -120780973 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 804 1334 63 15 69 chr6 28736152 28736355 -120780682 - B2_Mm1a SINE B2 0 193 2 2 804 216 0 0 0 chr6 28738093 28738117 -120778920 + (T)n Simple_repeat Simple_repeat 1 24 0 2 804 1260 41 0 0 chr6 28738117 28738263 -120778774 - B1_Mus2 SINE Alu 0 147 2 2 804 307 0 47 0 chr6 28738875 28738918 -120778119 + (CCTG)n Simple_repeat Simple_repeat 2 46 0 2 804 408 125 0 0 chr6 28742630 28742694 -120774343 + (TCCC)n Simple_repeat Simple_repeat 2 65 0 2 804 229 148 0 47 chr6 28742679 28742743 -120774294 + CT-rich Low_complexity Low_complexity 3 63 0 2 804 378 238 267 0 chr6 28743256 28743357 -120773680 + RSINE1 SINE B4 2 129 -36 2 804 437 313 44 37 chr6 28743403 28743539 -120773498 - RSINE1 SINE B4 -18 147 11 2 804 210 71 0 0 chr6 28744924 28744952 -120772085 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 804 197 372 62 0 chr6 28745321 28745434 -120771603 - MIR SINE MIR -111 151 32 2 804 201 147 0 0 chr6 28747412 28747446 -120769591 + (T)n Simple_repeat Simple_repeat 1 34 0 2 804 967 106 42 7 chr6 28747461 28747604 -120769433 - B1_Mur2 SINE Alu 0 149 2 2 804 1236 114 119 0 chr6 28747732 28747933 -120769104 - URR1B DNA MER1_type 0 225 1 2 804 476 297 30 48 chr6 28749647 28749813 -120767224 + MER58A DNA MER1_type 10 172 -52 2 804 261 238 32 0 chr6 28750491 28750554 -120766483 - PB1D10 SINE Alu -4 113 49 2 804 489 34 0 0 chr6 28751408 28751467 -120765570 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 2 804 340 296 28 0 chr6 28753051 28753159 -120763878 + PB1D7 SINE Alu 1 111 -9 2 804 551 241 88 0 chr6 28755832 28755969 -120761068 + B1_Mur2 SINE Alu 1 149 0 2 804 197 280 0 20 chr6 28757545 28757596 -120759441 + MIRc SINE MIR 121 170 -98 2 804 234 0 0 0 chr6 28757815 28757841 -120759196 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2 804 450 0 0 0 chr6 28759007 28759057 -120757980 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 804 259 258 32 0 chr6 28762172 28762234 -120754803 + MER3 DNA MER1_type 40 103 -106 2 804 216 0 0 0 chr6 28763445 28763469 -120753568 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2 804 372 259 21 36 chr6 28763808 28763948 -120753089 + L1MC4 LINE L1 7764 7901 -141 2 804 23 33 0 0 chr6 28764059 28764089 -120752948 + AT_rich Low_complexity Low_complexity 1 30 0 2 804 378 0 0 0 chr6 28764607 28764649 -120752388 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 804 1810 242 12 5 chr6 28765533 28765948 -120751089 + MTD LTR MaLR 1 418 -1 2 804 420 71 0 0 chr6 28767631 28767687 -120749350 + (TCC)n Simple_repeat Simple_repeat 2 57 0 2 804 181 244 0 0 chr6 28770852 28770893 -120746144 + L2 LINE L2 2123 2163 -1256 2 804 1241 54 0 0 chr6 28773694 28773841 -120743196 - B1_Mm SINE Alu 0 147 1 2 804 21 0 0 0 chr6 28774206 28774227 -120742810 + AT_rich Low_complexity Low_complexity 1 21 0 2 804 440 290 106 86 chr6 28774822 28775067 -120741970 - MIR SINE MIR -3 259 10 2 804 512 274 32 8 chr6 28775766 28775891 -120741146 + RSINE1 SINE B4 12 139 -26 2 804 297 368 24 98 chr6 28776399 28776604 -120740433 + MIR3 SINE MIR 14 203 -5 2 804 24 53 0 0 chr6 28779499 28779537 -120737500 + AT_rich Low_complexity Low_complexity 1 38 0 2 804 192 97 0 0 chr6 28779860 28779891 -120737146 + (CTG)n Simple_repeat Simple_repeat 1 31 0 2 804 212 0 0 35 chr6 28782016 28782045 -120734992 + (GGGGA)n Simple_repeat Simple_repeat 4 31 0 3 804 40 91 0 0 chr6 28782682 28782792 -120734245 + GC_rich Low_complexity Low_complexity 1 110 0 3 804 491 56 14 0 chr6 28783253 28783324 -120733713 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 3 804 205 239 0 0 chr6 28783326 28783372 -120733665 + C-rich Low_complexity Low_complexity 1 46 0 3 804 188 88 0 56 chr6 28783390 28783426 -120733611 + (CGAG)n Simple_repeat Simple_repeat 1 34 0 3 804 210 273 18 0 chr6 28784639 28784694 -120732343 - MIRb SINE MIR -156 112 57 3 804 465 253 6 36 chr6 28785194 28785308 -120731729 - PB1D10 SINE Alu -9 108 14 3 804 359 313 50 43 chr6 28786374 28786514 -120730523 - MIR3 SINE MIR -2 206 66 3 804 1363 56 78 0 chr6 28787349 28787528 -120729509 + B2_Mm2 SINE B2 3 195 0 3 804 242 302 124 62 chr6 28787762 28787801 -120729236 + PB1D7 SINE Alu 1 120 0 3 804 407 176 68 0 chr6 28787801 28787875 -120729162 + ID_B1 SINE B4 146 224 0 3 804 342 0 0 0 chr6 28788345 28788383 -120728654 + (T)n Simple_repeat Simple_repeat 1 38 0 3 804 1188 68 0 0 chr6 28788383 28788529 -120728508 - B1_Mus2 SINE Alu 0 147 2 3 804 299 299 67 77 chr6 28788548 28788814 -120728223 - MLT1D LTR MaLR -16 374 120 3 804 549 152 228 41 chr6 28789175 28789188 -120727849 - B1_Mur4 SINE Alu -1 149 141 3 804 252 0 0 0 chr6 28789188 28789216 -120727821 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 3 804 549 152 228 41 chr6 28789216 28789325 -120727712 - B1_Mur4 SINE Alu -10 140 4 3 804 479 252 8 8 chr6 28789513 28789624 -120727413 - B1_Mur2 SINE Alu -8 141 2 3 804 213 368 121 31 chr6 28789727 28790016 -120727021 + L2 LINE L2 2767 3081 -338 3 804 465 19 0 0 chr6 28790160 28790214 -120726823 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 3 804 665 321 73 26 chr6 28793695 28793967 -120723070 + B4A SINE B4 4 288 -4 3 804 302 242 0 18 chr6 28794849 28794949 -120722088 + L1MA6 LINE L1 6031 6125 -175 3 804 225 0 0 0 chr6 28794966 28794991 -120722046 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 804 609 207 26 40 chr6 28795013 28795164 -120721873 - RSINE1 SINE B4 -6 159 11 3 804 421 202 174 9 chr6 28795192 28795307 -120721730 + L1MA6 LINE L1 6165 6298 -2 3 804 320 323 83 83 chr6 28796272 28796525 -120720512 - MLT1L LTR MaLR -210 400 148 3 804 489 268 42 14 chr6 28796538 28796682 -120720355 + Charlie4a DNA MER1_type 43 190 -318 3 804 1145 164 107 5 chr6 28796692 28796888 -120720149 + B3 SINE B2 1 216 0 3 804 594 224 162 61 chr6 28797043 28797401 -120719636 - MER113 DNA MER1_type -54 467 40 3 804 238 268 14 27 chr6 28798280 28798353 -120718684 + LTR50 LTR ERVL 155 226 -569 3 804 192 184 0 0 chr6 28798592 28798641 -120718396 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 804 193 191 228 87 chr6 28799750 28799842 -120717195 + MIRc SINE MIR 48 152 -116 3 804 484 304 28 81 chr6 28801202 28801449 -120715588 + L3 LINE CR1 3650 3883 -606 3 804 268 122 40 20 chr6 28801732 28801782 -120715255 - B3A SINE B2 -147 51 1 3 804 387 0 0 0 chr6 28803064 28803107 -120713930 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 804 214 247 205 13 chr6 28803538 28803616 -120713421 + AmnSINE1 SINE SINE 61 153 -422 3 804 226 344 96 11 chr6 28805883 28805977 -120711060 + MIRb SINE MIR 20 121 -147 3 804 695 122 122 0 chr6 28806129 28806244 -120710793 - B1_Mus2 SINE Alu -18 129 1 3 804 284 311 0 2 chr6 28806375 28806460 -120710577 - ID4 SINE ID -53 99 16 3 804 223 299 70 30 chr6 28806486 28806586 -120710451 + MIR SINE MIR 90 193 -69 3 804 182 231 29 71 chr6 28806960 28807030 -120710007 - L2b LINE L2 -5 3370 3304 3 804 242 321 25 13 chr6 28808063 28808142 -120708895 - MIR SINE MIR -3 259 180 3 804 201 382 0 0 chr6 28808218 28808286 -120708751 - MIR SINE MIR -180 82 15 3 804 195 42 0 0 chr6 28812814 28812838 -120704199 + (AGATG)n Simple_repeat Simple_repeat 4 27 0 3 804 389 347 50 17 chr6 28813087 28813266 -120703771 - MIR SINE MIR -76 186 2 3 804 190 262 81 16 chr6 28813435 28813497 -120703540 - L2b LINE L2 -182 3193 3128 3 804 264 345 148 16 chr6 28813581 28813899 -120703138 - L2b LINE L2 -1154 2265 1906 3 804 807 95 34 8 chr6 28814072 28814189 -120702848 + PB1D9 SINE Alu 1 120 0 3 804 241 223 8 51 chr6 28815722 28815840 -120701197 + (TTTG)n Simple_repeat Simple_repeat 1 113 0 3 804 498 103 0 0 chr6 28816046 28816124 -120700913 + (TTGG)n Simple_repeat Simple_repeat 2 79 0 3 804 235 253 129 24 chr6 28816156 28816241 -120700796 - B1F SINE Alu -51 98 5 3 804 387 0 0 0 chr6 28817467 28817510 -120699527 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 804 244 197 65 16 chr6 28818946 28819008 -120698029 - MIR SINE MIR -56 206 142 3 804 219 69 0 0 chr6 28819041 28819070 -120697967 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 804 321 294 107 10 chr6 28819070 28819173 -120697864 - MIRb SINE MIR -139 129 17 3 804 216 0 0 0 chr6 28819779 28819803 -120697234 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 804 372 285 152 7 chr6 28819968 28820106 -120696931 - MER82 DNA MER2_type -1 652 495 3 804 391 209 98 62 chr6 28820171 28820283 -120696754 - B1_Mur1 SINE Alu -1 148 33 3 804 1071 282 100 21 chr6 28820312 28820692 -120696345 - MER82 DNA MER2_type -183 470 61 3 804 195 170 0 0 chr6 28820692 28820739 -120696298 + T-rich Low_complexity Low_complexity 1 47 0 3 804 837 174 25 89 chr6 28820742 28820944 -120696093 - B2_Mm2 SINE B2 0 195 7 3 804 732 139 44 44 chr6 28820913 28821048 -120695989 - B1_Mur3 SINE Alu -13 136 2 3 804 244 256 174 0 chr6 28821048 28821111 -120695926 - MER82 DNA MER2_type -575 78 1 3 804 790 232 12 147 chr6 28821115 28821367 -120695670 + ID_B1 SINE B4 3 220 -4 3 804 324 253 29 87 chr6 28821427 28821531 -120695506 - PB1 SINE Alu -29 98 1 3 804 225 0 0 0 chr6 28826523 28826548 -120690489 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 804 261 0 0 0 chr6 28827507 28827536 -120689501 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 3 804 226 171 0 0 chr6 28828386 28828427 -120688610 - LTR40b LTR ERVL -69 393 353 3 804 462 306 22 0 chr6 28829215 28829349 -120687688 + MIR SINE MIR 102 238 -24 3 804 404 77 0 15 chr6 28829584 28829650 -120687387 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 3 804 265 262 123 12 chr6 28829928 28830009 -120687028 - MER5A1 DNA MER1_type -29 137 48 3 804 241 358 42 0 chr6 28832109 28832204 -120684833 - MIRm SINE MIR -19 257 159 3 804 247 230 91 30 chr6 28832167 28832248 -120684789 - L2c LINE L2 -66 3321 3209 3 804 283 293 13 0 chr6 28832905 28832980 -120684057 + ID4_ SINE ID 8 83 0 3 804 648 26 0 0 chr6 28835571 28835649 -120681388 + (GGAGA)n Simple_repeat Simple_repeat 1 78 0 3 805 22 35 0 0 chr6 28836792 28836821 -120680216 + AT_rich Low_complexity Low_complexity 1 29 0 3 805 357 308 83 15 chr6 28839128 28839260 -120677777 + B1F SINE Alu 1 141 -8 3 805 720 0 0 0 chr6 28839310 28839390 -120677647 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 3 805 591 224 110 12 chr6 28839908 28840071 -120676966 + B3A SINE B2 2 180 -18 3 805 746 141 42 14 chr6 28840099 28840243 -120676794 + B1_Mur4 SINE Alu 1 148 -2 3 805 182 311 16 16 chr6 28842891 28842953 -120674084 + MER5A DNA MER1_type 8 69 -120 3 805 205 176 0 0 chr6 28842920 28842954 -120674083 - MER5A DNA MER1_type -25 164 131 3 805 288 349 64 12 chr6 28842976 28843147 -120673890 + HAL1 LINE L1 2219 2398 -109 3 805 209 347 13 0 chr6 28843282 28843357 -120673680 + MER5A DNA MER1_type 111 186 -3 3 805 455 239 126 7 chr6 28843357 28843489 -120673548 - MIR3 SINE MIR -42 166 19 3 805 279 0 0 0 chr6 28843769 28843800 -120673237 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 805 213 314 43 0 chr6 28845443 28845513 -120671524 + MIR SINE MIR 68 140 -122 3 805 500 246 0 34 chr6 28845536 28845654 -120671383 + RSINE1 SINE B4 2 115 -50 3 805 180 0 0 0 chr6 28845662 28845682 -120671355 + (CG)n Simple_repeat Simple_repeat 2 21 0 3 805 351 0 0 0 chr6 28845682 28845720 -120671317 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 805 311 284 136 39 chr6 28847023 28847177 -120669860 + MER117 DNA MER1_type 29 197 0 3 805 409 273 127 15 chr6 28847237 28847371 -120669666 + RSINE1 SINE B4 11 159 -6 3 805 619 218 32 0 chr6 28847969 28848093 -120668944 - B1_Mur1 SINE Alu -5 144 17 3 805 483 18 0 0 chr6 28849494 28849550 -120667487 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 805 186 150 150 0 chr6 28849812 28849852 -120667185 + MER5A DNA MER1_type 2 47 -142 3 805 512 173 13 25 chr6 28851784 28851908 -120665129 + B1_Mus2 SINE Alu 27 147 -2 3 805 626 0 14 0 chr6 28852405 28852479 -120664558 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 805 435 204 4 27 chr6 28852674 28852941 -120664096 + GA-rich Low_complexity Low_complexity 1 260 0 3 805 460 270 62 84 chr6 28853328 28853506 -120663531 + MTEa LTR MaLR 206 379 0 3 805 719 151 59 0 chr6 28853938 28854080 -120662957 + B1F SINE Alu 1 149 0 3 805 937 118 5 84 chr6 28854501 28854704 -120662333 + B2_Mm2 SINE B2 3 189 -6 3 805 294 298 0 50 chr6 28855699 28855798 -120661239 - MLT1A0 LTR MaLR 0 374 281 3 805 420 239 179 60 chr6 28855821 28855972 -120661065 - MLT1A0 LTR MaLR -164 201 33 3 805 516 304 0 7 chr6 28857120 28857256 -120659781 + ID_B1 SINE B4 90 224 0 3 805 1048 121 42 0 chr6 28857417 28857583 -120659454 + B2_Mm2 SINE B2 5 177 -18 3 805 2398 177 67 4 chr6 28857596 28858077 -120658960 - RMER20A LTR ERVK -4 512 2 3 805 183 80 0 0 chr6 28858077 28858102 -120658935 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3 805 823 157 98 16 chr6 28858122 28858316 -120658721 + B3 SINE B2 1 210 -6 3 805 786 243 25 104 chr6 28858575 28858892 -120658145 - B4A SINE B4 0 292 1 3 805 291 375 25 0 chr6 28860084 28860204 -120656833 + PB1 SINE Alu 1 123 -4 4 805 1074 30 0 0 chr6 28860907 28861042 -120655995 + B2_Mm2 SINE B2 2 136 -59 4 805 1136 194 168 16 chr6 28861231 28861535 -120655502 + ORR1D1 LTR MaLR 25 374 0 4 805 6532 39 1 1 chr6 28861781 28862594 -120654443 - L1Md_F2 LINE L1 0 6582 5770 4 805 7212 44 8 0 chr6 28862594 28863503 -120653534 + L1Md_F2 LINE L1 4839 5754 -129 4 805 273 325 46 98 chr6 28864475 28864649 -120652388 - MLT1G LTR MaLR -265 326 162 4 805 829 238 37 0 chr6 28865048 28865237 -120651800 + B3A SINE B2 1 196 -2 4 805 415 294 65 60 chr6 28865271 28865470 -120651567 + RMER15 LTR ERVL 371 570 -5 4 805 2473 248 97 14 chr6 28865483 28866027 -120651010 + Lx8 LINE L1 6473 7071 -402 4 805 2595 98 51 28 chr6 28866027 28866458 -120650579 - BGLII_B LTR ERVK 0 441 1 4 805 2473 248 97 14 chr6 28866458 28866544 -120650493 + Lx8 LINE L1 7072 7155 -318 4 805 509 372 76 6 chr6 28866954 28867284 -120649753 + Lx8 LINE L1 7121 7473 0 4 805 590 228 29 29 chr6 28867997 28868008 -120649029 - B1_Mur2 SINE Alu -3 146 137 4 805 333 0 0 0 chr6 28868008 28868045 -120648992 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 805 590 228 29 29 chr6 28868045 28868173 -120648864 - B1_Mur2 SINE Alu -13 136 7 4 805 1206 201 92 0 chr6 28868182 28868431 -120648606 + MT2A LTR ERVL 1 272 -261 4 805 321 232 81 40 chr6 28868575 28868674 -120648363 - L1MCa LINE L1 -4504 2004 1902 4 805 339 165 45 9 chr6 28868675 28868785 -120648252 + (TA)n Simple_repeat Simple_repeat 1 114 0 4 805 352 60 0 0 chr6 28868785 28868852 -120648185 + MT2A LTR ERVL 467 533 0 4 805 248 281 0 0 chr6 28869011 28869068 -120647969 - B1F1 SINE Alu -88 61 5 4 805 192 317 81 8 chr6 28869713 28869837 -120647200 - L2a LINE L2 0 3426 3294 4 805 479 319 116 8 chr6 28869849 28870108 -120646929 + MLT1A0 LTR MaLR 21 307 -58 4 805 232 174 0 0 chr6 28870516 28870562 -120646475 - L2a LINE L2 -247 3179 3134 4 805 941 276 132 26 chr6 28870563 28870609 -120646428 - MT2A LTR ERVL 0 533 489 4 805 554 0 15 0 chr6 28870609 28870675 -120646362 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 4 805 941 276 132 26 chr6 28870675 28871008 -120646029 - MT2A LTR ERVL -45 488 114 4 805 958 231 9 43 chr6 28871020 28871251 -120645786 + MTEa LTR MaLR 115 337 -42 4 805 546 218 48 18 chr6 28871261 28871393 -120645644 - MTE2a LTR MaLR -8 371 212 4 805 950 244 9 5 chr6 28871515 28871729 -120645308 - B3 SINE B2 0 216 2 4 805 428 275 27 9 chr6 28871742 28871852 -120645185 - MTE2a LTR MaLR -211 168 57 4 805 1995 112 41 6 chr6 28871869 28872185 -120644852 - ORR1A2 LTR MaLR 0 327 1 4 805 188 86 0 28 chr6 28873103 28873139 -120643898 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 4 805 345 289 83 32 chr6 28873691 28873848 -120643189 - Charlie16a DNA MER1_type -115 227 63 4 805 226 335 44 25 chr6 28874014 28874173 -120642864 + L1MB3 LINE L1 5848 6009 -174 4 805 2135 89 53 20 chr6 28874174 28874529 -120642508 - IAPLTR1_Mm LTR ERVK 0 367 1 4 805 27613 21 9 0 chr6 28874533 28877775 -120639262 - IAPEz-int LTR ERVK -3 6478 3210 4 805 8088 87 76 9 chr6 28877774 28878998 -120638039 - IAPEz-int LTR ERVK -5168 1313 8 4 805 2135 89 53 20 chr6 28878998 28879353 -120637684 - IAPLTR1_Mm LTR ERVK 0 367 1 4 805 1902 79 115 64 chr6 28879430 28879821 -120637216 - RLTR10A LTR ERVK 0 411 1 4 805 4681 59 11 2 chr6 28879857 28880512 -120636525 - L1_Mus3 LINE L1 0 6638 5994 4 805 344 115 60 60 chr6 28880577 28880660 -120636377 + Lx9 LINE L1 7560 7642 -2 4 805 479 237 132 21 chr6 28880711 28880901 -120636136 + B3 SINE B2 5 215 -1 4 805 260 313 141 0 chr6 28880911 28881010 -120636027 + RSINE1 SINE B4 43 155 -10 4 805 22 35 0 0 chr6 28881012 28881041 -120635996 + AT_rich Low_complexity Low_complexity 1 29 0 4 805 243 0 0 0 chr6 28881068 28881095 -120635942 + (A)n Simple_repeat Simple_repeat 1 27 0 4 805 186 71 0 0 chr6 28882299 28882327 -120634710 + (C)n Simple_repeat Simple_repeat 1 28 0 4 805 229 314 23 11 chr6 28883090 28883177 -120633860 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 805 365 191 0 0 chr6 28883360 28883428 -120633609 + MER44D DNA MER2_type 39 106 -599 4 805 262 389 8 31 chr6 28883583 28883713 -120633324 + MER44D DNA MER2_type 96 222 -483 4 805 636 294 34 38 chr6 28883822 28884087 -120632950 + MER44D DNA MER2_type 443 701 -4 4 805 543 296 0 7 chr6 28884131 28884284 -120632753 + RSINE1 SINE B4 14 165 0 4 805 728 246 9 84 chr6 28884322 28884396 -120632641 + B3A SINE B2 2 75 -123 4 805 2246 93 12 0 chr6 28884396 28884719 -120632318 - ORR1A2 LTR MaLR 0 327 1 4 805 728 246 9 84 chr6 28884719 28884857 -120632180 + B3A SINE B2 76 198 0 4 805 293 219 55 0 chr6 28885013 28885086 -120631951 + B3 SINE B2 41 117 -99 4 805 2938 51 43 2 chr6 28885208 28885603 -120631434 + RLTR10A LTR ERVK 1 411 0 4 805 243 0 0 0 chr6 28885727 28885754 -120631283 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 805 1085 71 0 0 chr6 28885759 28885900 -120631137 - B1_Mus2 SINE Alu -5 142 2 4 805 262 268 23 23 chr6 28886142 28886230 -120630807 - L1M5 LINE L1 -763 5431 5344 4 805 202 146 0 24 chr6 28886248 28886290 -120630747 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 4 805 665 179 0 0 chr6 28886394 28886506 -120630531 + B1_Mus1 SINE Alu 2 113 -35 4 805 387 0 0 0 chr6 28886518 28886561 -120630476 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 805 543 278 38 27 chr6 28886643 28886828 -120630209 - B3A SINE B2 -11 187 1 4 805 294 95 0 0 chr6 28886875 28886917 -120630120 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 805 826 252 38 0 chr6 28886933 28887143 -120629894 - B4 SINE B4 -72 220 3 4 805 319 200 41 41 chr6 28887143 28887216 -120629821 - B1F1 SINE Alu -2 147 75 4 805 243 0 0 0 chr6 28887259 28887286 -120629751 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 4 805 817 272 117 29 chr6 28887415 28887722 -120629315 - MTE2a LTR MaLR -18 361 28 4 805 913 244 139 55 chr6 28887729 28888096 -120628941 + MTD LTR MaLR 2 406 -15 4 805 550 105 0 17 chr6 28888147 28888263 -120628774 + (GA)n Simple_repeat Simple_repeat 2 115 0 4 805 1219 286 129 24 chr6 28888263 28888607 -120628430 + L1MC4 LINE L1 6685 7111 -931 4 805 680 241 139 35 chr6 28888607 28888809 -120628228 - ID_B1 SINE B4 0 224 2 4 805 1219 246 109 28 chr6 28888809 28889205 -120627832 + L1MC4 LINE L1 7112 7534 -508 4 805 336 48 0 0 chr6 28889468 28889510 -120627527 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 805 311 267 11 22 chr6 28889522 28889614 -120627423 - B4A SINE B4 -14 278 188 4 805 1220 55 7 0 chr6 28889636 28889782 -120627255 - B1_Mus1 SINE Alu -1 147 1 4 805 353 295 81 28 chr6 28889787 28889957 -120627080 - B4A SINE B4 -94 198 19 4 805 203 184 0 26 chr6 28889957 28889996 -120627041 + CT-rich Low_complexity Low_complexity 1 38 0 4 805 403 204 100 20 chr6 28889996 28890096 -120626941 - PB1D7 SINE Alu -1 119 12 4 805 412 117 0 25 chr6 28890110 28890189 -120626848 + (CCCCCT)n Simple_repeat Simple_repeat 6 82 0 4 805 1074 79 43 0 chr6 28890191 28890330 -120626707 + B1_Mm SINE Alu 3 147 0 4 805 216 325 24 48 chr6 28890423 28890435 -120626602 - B2_Mm2 SINE B2 -107 88 7 4 805 232 319 0 42 chr6 28890435 28890507 -120626530 - RSINE1 SINE B4 -89 76 8 4 805 1339 96 16 11 chr6 28890537 28890726 -120626311 - B2_Mm2 SINE B2 -5 190 1 4 805 261 0 0 0 chr6 28890831 28890860 -120626177 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 805 1128 84 0 7 chr6 28890860 28891004 -120626033 - B1_Mus2 SINE Alu -3 144 2 4 805 933 136 117 12 chr6 28891010 28891181 -120625856 - B2_Mm2 SINE B2 -5 190 2 4 805 494 279 63 14 chr6 28891465 28891607 -120625430 + B1F1 SINE Alu 1 149 0 4 805 1441 265 154 40 chr6 28892308 28893746 -120623291 - Lx6 LINE L1 -790 6670 6398 4 805 588 265 31 89 chr6 28893763 28893987 -120623050 - B3 SINE B2 -5 211 1 4 805 316 246 29 14 chr6 28894038 28894108 -120622929 - ID4_ SINE ID -12 71 1 4 805 464 239 42 8 chr6 28894124 28894242 -120622795 - B1F SINE Alu -1 148 27 4 805 2081 211 46 71 chr6 28894410 28894921 -120622116 + MT2A LTR ERVL 1 498 -35 4 805 348 127 0 0 chr6 28894921 28894976 -120622061 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 805 2081 211 46 71 chr6 28894976 28895011 -120622026 + MT2A LTR ERVL 499 533 0 4 805 204 179 0 0 chr6 28895056 28895095 -120621942 + (TTA)n Simple_repeat Simple_repeat 1 39 0 4 805 364 279 22 96 chr6 28895095 28895230 -120621807 - RSINE1 SINE B4 -1 164 40 4 805 1723 126 130 16 chr6 28895242 28895549 -120621488 - RLTR14 LTR ERV1 -40 342 1 4 805 390 245 79 59 chr6 28896214 28896366 -120620671 + RSINE1 SINE B4 3 157 -8 4 805 3146 32 55 3 chr6 28896382 28896762 -120620275 - MTB LTR MaLR 0 400 1 4 805 23 33 0 0 chr6 28896782 28896812 -120620225 + AT_rich Low_complexity Low_complexity 1 30 0 4 805 208 143 0 0 chr6 28896953 28896988 -120620049 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 805 533 209 17 25 chr6 28897675 28897793 -120619244 - PB1D10 SINE Alu 0 117 1 4 805 417 313 50 17 chr6 28897925 28898104 -120618933 + LTR79 LTR ERVL 339 523 -4 4 805 304 186 371 0 chr6 28898199 28898296 -120618741 + B1_Mm SINE Alu 6 138 -9 4 805 260 266 0 0 chr6 28898324 28898388 -120618649 + GA-rich Low_complexity Low_complexity 4 67 0 4 805 197 250 44 77 chr6 28899277 28899368 -120617669 - L2 LINE L2 -3228 191 104 4 805 239 269 135 50 chr6 28899992 28900133 -120616904 + MIR SINE MIR 40 192 -70 4 805 351 96 0 55 chr6 28900536 28900591 -120616446 - B3A SINE B2 -146 52 1 4 805 2452 62 3 77 chr6 28900628 28900979 -120616058 + ORR1A2 LTR MaLR 3 327 0 4 805 905 259 10 21 chr6 28901610 28901803 -120615234 + B3 SINE B2 2 192 -24 4 805 541 297 109 19 chr6 28902264 28902586 -120614451 + L1MEe LINE L1 1376 1726 -4440 4 805 2271 102 13 0 chr6 28902691 28903006 -120614031 + ORR1A4 LTR MaLR 1 319 -10 4 805 395 301 29 0 chr6 28903118 28903221 -120613816 + B4A SINE B4 1 106 -186 4 805 313 345 182 19 chr6 28903469 28903788 -120613249 + L1MEe LINE L1 2221 2591 -3555 4 805 770 317 94 104 chr6 28903979 28904469 -120612568 + MER21B LTR ERV1 274 758 -105 4 805 438 318 66 25 chr6 28904691 28904965 -120612072 + HAL1 LINE L1 96 380 -2127 5 805 751 213 7 0 chr6 28905158 28905294 -120611743 + ID_B1 SINE B4 87 223 -1 5 805 276 281 16 47 chr6 28905400 28905527 -120611510 + HAL1 LINE L1 776 898 -1609 5 805 266 159 0 0 chr6 28905671 28905715 -120611322 - ID4 SINE ID -28 55 12 5 805 573 275 94 0 chr6 28906114 28906263 -120610774 - RSINE1 SINE B4 -2 163 1 5 805 275 324 0 0 chr6 28906702 28906770 -120610267 + ID4 SINE ID 14 81 -2 5 805 719 179 22 7 chr6 28906979 28907114 -120609923 - B1_Mur2 SINE Alu -1 148 12 5 805 276 294 8 107 chr6 28907014 28907136 -120609901 - MT2B LTR ERVL -336 265 156 5 805 234 0 0 0 chr6 28907347 28907373 -120609664 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 805 759 276 22 11 chr6 28907375 28907558 -120609479 - B3A SINE B2 -13 185 1 5 805 325 341 123 43 chr6 28907937 28908652 -120608385 + L1ME3B LINE L1 4397 5168 -978 5 805 679 237 19 13 chr6 28908798 28908956 -120608081 - RSINE1 SINE B4 -4 161 3 5 805 291 295 0 10 chr6 28909138 28909234 -120607803 + L1ME3B LINE L1 5357 5451 -789 5 805 404 341 143 52 chr6 28909268 28909707 -120607330 + L1ME3B LINE L1 5533 6011 -229 5 805 243 0 0 0 chr6 28910544 28910571 -120606466 + (TTA)n Simple_repeat Simple_repeat 1 27 0 5 805 499 257 30 0 chr6 28910572 28910673 -120606364 - PB1D10 SINE Alu -13 104 1 5 805 479 279 123 64 chr6 28910726 28911052 -120605985 - Lx8 LINE L1 -9 7464 7120 5 805 447 19 0 0 chr6 28911435 28911487 -120605550 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 805 775 240 44 22 chr6 28911683 28911866 -120605171 - B3 SINE B2 -29 187 1 5 805 677 183 0 24 chr6 28912102 28912225 -120604812 - B1_Mur1 SINE Alu -20 129 10 5 805 366 172 110 44 chr6 28913580 28913671 -120603366 + MER103 DNA DNA 26 122 -44 5 805 567 0 0 0 chr6 28913782 28913845 -120603192 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 805 813 261 44 84 chr6 28913886 28914183 -120602854 - B4A SINE B4 -1 291 7 5 805 437 222 12 0 chr6 28914220 28914301 -120602736 - ID4 SINE ID 0 83 2 5 805 2353 95 32 0 chr6 28914418 28914734 -120602303 + ORR1A4 LTR MaLR 1 326 -3 5 805 219 139 0 0 chr6 28914751 28914787 -120602250 + (CCCCCT)n Simple_repeat Simple_repeat 3 38 0 5 805 456 35 0 0 chr6 28914789 28914847 -120602190 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 805 488 274 0 0 chr6 28914852 28914947 -120602090 - RSINE1 SINE B4 -69 96 2 5 805 346 244 129 8 chr6 28914965 28915089 -120601948 - L1MD1 LINE L1 -6 6236 6098 5 805 318 251 27 135 chr6 28915102 28915305 -120601732 + MTE2a LTR MaLR 195 379 0 5 805 437 237 104 13 chr6 28916183 28916337 -120600700 + MER58B DNA MER1_type 71 238 -103 5 805 258 32 0 0 chr6 28917062 28917093 -120599944 + (C)n Simple_repeat Simple_repeat 1 31 0 5 805 276 370 34 0 chr6 28917580 28917699 -120599338 + MER3 DNA MER1_type 22 144 -65 5 805 751 220 5 16 chr6 28917724 28918340 -120598697 + (TATG)n Simple_repeat Simple_repeat 1 608 0 5 805 294 293 13 0 chr6 28918341 28918416 -120598621 - ID4 SINE ID -6 77 2 5 805 239 292 0 0 chr6 28918424 28918489 -120598548 + MER3 DNA MER1_type 145 209 0 5 805 273 240 40 13 chr6 28918837 28918913 -120598124 - ID4 SINE ID -3 80 3 5 805 771 265 23 60 chr6 28919175 28919258 -120597779 + B4 SINE B4 10 84 -208 5 805 344 333 13 52 chr6 28919258 28919413 -120597624 + B1_Mur1 SINE Alu 1 149 0 5 805 477 0 0 0 chr6 28919442 28919495 -120597542 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 805 477 0 0 0 chr6 28919495 28919547 -120597490 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 805 330 293 91 46 chr6 28919602 28919777 -120597260 - MER20 DNA MER1_type 0 219 37 5 805 495 195 168 50 chr6 28920439 28920629 -120596408 - B3A SINE B2 -5 211 10 5 805 1927 204 101 57 chr6 28920797 28921323 -120595714 + RLTR20B3 LTR ERVK 11 559 -18 5 805 204 338 29 0 chr6 28921406 28921474 -120595563 + L2 LINE L2 2824 2893 -526 5 805 248 339 93 25 chr6 28921794 28921912 -120595125 - LTR16E1 LTR ERVL -412 126 1 5 805 267 252 60 112 chr6 28921974 28922090 -120594947 + L2a LINE L2 3316 3425 -1 5 805 183 219 0 0 chr6 28922540 28922572 -120594465 - MIRb SINE MIR -21 247 216 5 805 268 290 107 29 chr6 28923061 28923164 -120593873 - MLT1E LTR MaLR -539 114 4 5 805 248 333 72 67 chr6 28923379 28923559 -120593478 + MLT1J LTR MaLR 71 251 -261 5 805 243 242 140 112 chr6 28923573 28923614 -120593423 - PB1D10 SINE Alu 0 117 8 5 805 342 167 212 0 chr6 28923614 28923680 -120593357 - ID_B1 SINE B4 -56 168 89 5 805 859 101 0 72 chr6 28923935 28924074 -120592963 - B1_Mur4 SINE Alu -1 149 21 5 805 512 300 53 75 chr6 28924074 28924162 -120592875 - ID_B1 SINE B4 0 224 3 5 805 232 302 0 16 chr6 28924587 28924651 -120592386 + MER5B DNA MER1_type 5 67 -111 5 805 237 298 118 43 chr6 28924674 28924860 -120592177 - MIRc SINE MIR -60 208 9 5 805 200 248 41 150 chr6 28924926 28925073 -120591964 - MER5B DNA MER1_type -46 132 2 5 805 195 269 84 60 chr6 28925675 28925758 -120591279 - L2c LINE L2 -258 3129 3045 5 805 1428 172 21 0 chr6 28925867 28926100 -120590937 - ORR1D1 LTR MaLR -8 366 129 5 805 691 183 20 66 chr6 28926112 28926264 -120590773 + B1_Mur4 SINE Alu 6 150 0 5 805 857 127 7 60 chr6 28926259 28926410 -120590627 - ORR1D1 LTR MaLR -231 143 1 5 805 434 243 0 46 chr6 28926711 28926819 -120590218 + B1_Mur1 SINE Alu 47 149 0 5 805 242 217 48 32 chr6 28926954 28927016 -120590021 + MLT1M LTR MaLR 235 297 -375 5 805 2210 144 32 19 chr6 28927825 28928199 -120588838 + RLTR14 LTR ERV1 3 381 -1 5 805 1452 44 0 0 chr6 28928350 28928530 -120588507 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 805 1011 258 131 29 chr6 28929501 28929845 -120587192 + MTEb LTR MaLR 1 379 0 5 805 219 254 0 56 chr6 28929856 28929927 -120587110 - MIRc SINE MIR -119 149 83 5 805 247 25 0 48 chr6 28930006 28930048 -120586989 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 5 805 24 0 0 0 chr6 28930448 28930472 -120586565 + GC_rich Low_complexity Low_complexity 1 24 0 5 805 237 33 0 0 chr6 28931144 28931174 -120585863 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 805 299 25 25 0 chr6 28934932 28934972 -120582065 + (CTAA)n Simple_repeat Simple_repeat 1 41 0 5 805 1406 138 4 35 chr6 28935231 28935463 -120581574 + URR1B DNA MER1_type 1 225 0 5 805 334 332 137 10 chr6 28935670 28935874 -120581163 - LTR53 LTR ERVL -94 425 196 5 805 2478 80 12 3 chr6 28935891 28936215 -120580822 - ORR1A2 LTR MaLR 0 327 1 5 805 277 333 72 31 chr6 28936608 28936803 -120580234 + MIR3 SINE MIR 3 205 -3 5 805 318 244 203 32 chr6 28938142 28938265 -120578772 - MER5B DNA MER1_type -23 155 12 5 805 255 61 0 0 chr6 28938352 28938385 -120578652 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 5 805 884 245 41 41 chr6 28938389 28938610 -120578427 - ID_B1 SINE B4 0 224 4 5 805 199 298 53 0 chr6 28938626 28938683 -120578354 + MER5B DNA MER1_type 114 173 -5 5 805 401 302 24 8 chr6 28938720 28938847 -120578190 + MER5A1 DNA MER1_type 29 157 -9 5 805 570 224 46 4 chr6 28938870 28938991 -120578046 + B1_Mur1 SINE Alu 13 133 -16 5 805 381 58 0 0 chr6 28939000 28939052 -120577985 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 5 805 234 0 0 0 chr6 28939957 28939983 -120577054 + (A)n Simple_repeat Simple_repeat 1 26 0 5 805 224 71 0 0 chr6 28940000 28940028 -120577009 + (GGGAGA)n Simple_repeat Simple_repeat 6 33 0 5 805 697 203 6 6 chr6 28940029 28940207 -120576830 + GA-rich Low_complexity Low_complexity 1 178 0 5 805 254 255 0 0 chr6 28940992 28941043 -120575994 - L3 LINE CR1 -3 4486 4436 5 805 243 0 0 0 chr6 28941138 28941165 -120575872 + (GGA)n Simple_repeat Simple_repeat 3 29 0 5 805 188 379 105 21 chr6 28941518 28941661 -120575376 - L3 LINE CR1 -44 4445 4291 5 805 23 0 0 0 chr6 28941962 28941985 -120575052 + AT_rich Low_complexity Low_complexity 1 23 0 5 805 972 50 0 0 chr6 28941985 28942105 -120574932 - B2_Mm2 SINE B2 -69 126 7 5 805 832 154 84 0 chr6 28942178 28942321 -120574716 - B3 SINE B2 -61 155 1 5 805 903 224 15 20 chr6 28942869 28943065 -120573972 - B3 SINE B2 -15 201 7 5 805 391 313 122 41 chr6 28943384 28943891 -120573146 + HAL1 LINE L1 1093 1640 -867 5 805 471 250 73 7 chr6 28943951 28944088 -120572949 + B1F SINE Alu 4 149 0 5 805 214 135 27 0 chr6 28944113 28944150 -120572887 + ID4 SINE ID 14 51 -32 5 805 871 209 0 0 chr6 28944618 28944766 -120572271 + B3 SINE B2 1 148 -68 5 805 33 25 0 0 chr6 28944937 28944977 -120572060 + AT_rich Low_complexity Low_complexity 1 40 0 5 805 537 58 0 0 chr6 28944998 28945067 -120571970 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 805 820 199 7 0 chr6 28945168 28945314 -120571723 - B1_Mur2 SINE Alu -2 147 1 5 805 495 365 145 32 chr6 28946117 28947001 -120570036 + L1M5 LINE L1 4126 5109 -1037 5 805 387 173 0 0 chr6 28947014 28947095 -120569942 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 805 363 257 105 38 chr6 28947101 28947206 -120569831 - PB1D10 SINE Alu 0 117 6 5 805 257 247 0 12 chr6 28947236 28947318 -120569719 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 805 503 269 90 14 chr6 28947470 28947692 -120569345 - L1MA4 LINE L1 -370 5930 5692 5 805 232 171 0 0 chr6 28947693 28947728 -120569309 + L1M2 LINE L1 4940 4974 -1169 5 805 859 202 119 0 chr6 28947778 28947971 -120569066 + B3 SINE B2 1 216 0 5 805 668 200 3 6 chr6 28948293 28948646 -120568391 + (TG)n Simple_repeat Simple_repeat 1 351 0 6 805 279 280 0 4 chr6 28948668 28948914 -120568123 + (TG)n Simple_repeat Simple_repeat 1 244 0 6 805 258 307 13 0 chr6 28949006 28949081 -120567956 + ID4 SINE ID 2 77 -6 6 805 474 227 97 21 chr6 28949187 28949331 -120567706 - L1MC5 LINE L1 -76 7885 7731 6 805 1192 81 6 6 chr6 28950009 28950184 -120566853 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 6 805 1184 50 0 0 chr6 28950185 28950326 -120566711 - B1_Mus2 SINE Alu -6 141 1 6 805 301 259 129 76 chr6 28950338 28950509 -120566528 - L1M5 LINE L1 -1786 4360 4181 6 805 291 114 0 0 chr6 28950704 28950748 -120566289 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 805 826 226 120 5 chr6 28951475 28951675 -120565362 - ID_B1 SINE B4 0 224 2 6 805 517 252 94 0 chr6 28951825 28951952 -120565085 - B1F2 SINE Alu 0 149 11 6 805 576 283 134 38 chr6 28952084 28952323 -120564714 - MamRep564 Unknown Unknown -4 353 92 6 805 333 264 25 53 chr6 28952724 28952885 -120564152 + CT-rich Low_complexity Low_complexity 1 156 0 6 805 771 62 205 0 chr6 28952987 28953099 -120563938 - B1_Mus1 SINE Alu -13 135 1 6 805 352 288 7 108 chr6 28953153 28953301 -120563736 - B4A SINE B4 -151 141 9 6 805 532 191 28 71 chr6 28953317 28953458 -120563579 - L1MA6 LINE L1 -2 6298 6164 6 805 237 200 0 0 chr6 28953458 28953503 -120563534 + L1MA6 LINE L1 6123 6167 -136 6 805 266 314 38 9 chr6 28953574 28953680 -120563357 - L1ME1 LINE L1 -19 6105 5997 6 805 372 271 105 11 chr6 28954042 28954232 -120562805 + L1M5 LINE L1 4905 5112 -1034 6 805 571 221 21 42 chr6 28954256 28954398 -120562639 + B1_Mur1 SINE Alu 2 140 -9 6 805 253 252 134 73 chr6 28954799 28955062 -120561975 - L2a LINE L2 -192 3234 2940 6 805 883 242 192 79 chr6 28955439 28955816 -120561221 - MTD LTR MaLR -17 402 1 6 805 359 327 31 12 chr6 28955854 28956015 -120561022 - L1ME1 LINE L1 -187 5992 5829 6 805 258 240 0 0 chr6 28956292 28956342 -120560695 - B3A SINE B2 -148 50 1 6 805 726 262 65 80 chr6 28956384 28956720 -120560317 - L1MEf LINE L1 -4483 1717 1387 6 805 225 0 0 0 chr6 28956815 28956840 -120560197 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 6 805 387 127 0 0 chr6 28956840 28956903 -120560134 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 6 805 763 200 7 27 chr6 28956903 28957052 -120559985 - B1_Mus2 SINE Alu 0 147 2 6 805 447 269 111 18 chr6 28957389 28957566 -120559471 - MIR SINE MIR -66 202 16 6 805 13298 79 32 16 chr6 28958134 28960745 -120556292 - L1VL2 LINE L1 -632 2983 330 6 805 321 327 6 84 chr6 28960765 28960932 -120556105 - L1MEf LINE L1 -5420 780 627 6 805 598 134 223 0 chr6 28961232 28961344 -120555693 + B1_Mus2 SINE Alu 1 137 -10 6 805 189 0 0 0 chr6 28961344 28961365 -120555672 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 805 387 315 31 16 chr6 28961570 28961699 -120555338 - MLT1B LTR MaLR -241 149 19 6 805 1183 82 0 0 chr6 28962206 28962353 -120554684 + B1_Mus2 SINE Alu 1 147 0 6 805 863 45 1 0 chr6 28962441 28962550 -120554487 - L1_Mm LINE L1 -1528 4618 4480 6 805 4249 44 0 0 chr6 28962550 28963048 -120553989 + L1Md_T LINE L1 6085 6582 0 6 805 605 282 125 7 chr6 28963489 28963786 -120553251 + MTEa LTR MaLR 1 332 -47 6 805 547 226 19 9 chr6 28963785 28963892 -120553145 - RSINE1 SINE B4 -25 140 33 6 805 2876 35 9 0 chr6 28964073 28964420 -120552617 - MTA_Mm LTR MaLR -46 350 1 6 805 318 248 95 47 chr6 28965276 28965424 -120551613 - MLT1A1 LTR MaLR -2 406 252 6 100 543 331 71 38 chr6 28966779 28967200 -120549837 - L2a LINE L2 -47 3379 2945 6 806 259 239 0 18 chr6 28969670 28969781 -120547256 + RMER17C LTR ERVK 151 259 -151 6 806 572 280 107 19 chr6 28969728 28969938 -120547099 - MLT2B4 LTR ERVL -191 223 1 6 806 260 298 126 42 chr6 28970056 28970270 -120546767 - L2 LINE L2 -341 3078 2847 6 806 692 286 25 10 chr6 28970336 28970537 -120546500 - ID_B1 SINE B4 -2 222 19 6 806 994 144 79 92 chr6 28970651 28970880 -120546157 - URR1A DNA MER1_type 0 226 1 6 806 181 267 0 32 chr6 28972114 28972176 -120544861 + L2 LINE L2 2315 2374 -1045 6 806 973 147 163 0 chr6 28972830 28973020 -120544017 - URR1A DNA MER1_type -5 221 1 6 806 367 298 120 7 chr6 28974738 28974880 -120542157 + MIRb SINE MIR 22 179 -89 6 806 347 0 23 0 chr6 28974953 28974996 -120542041 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 806 234 62 0 0 chr6 28976574 28976606 -120540431 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 806 1470 159 194 12 chr6 28977157 28977384 -120539653 - ORR1C2 LTR MaLR 0 384 120 6 806 422 114 0 14 chr6 28977384 28977455 -120539582 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 806 1470 166 183 12 chr6 28977455 28977553 -120539484 - ORR1C2 LTR MaLR -265 119 1 6 806 322 264 115 62 chr6 28977699 28977812 -120539225 + RSINE1 SINE B4 45 163 -2 6 806 639 39 0 0 chr6 28978060 28978138 -120538899 + (GA)n Simple_repeat Simple_repeat 1 78 0 6 806 355 299 20 62 chr6 28978727 28978873 -120538164 + MLT1A1 LTR MaLR 267 406 -2 6 806 247 274 27 14 chr6 28979034 28979108 -120537929 + MTEb LTR MaLR 7 81 -298 6 806 356 267 0 167 chr6 28979103 28979229 -120537808 + MTE-int LTR MaLR 887 991 -589 6 806 446 269 24 118 chr6 28979241 28979410 -120537627 + MTEb LTR MaLR 125 277 -102 6 806 1971 275 49 26 chr6 28979389 28979553 -120537484 + MTE-int LTR MaLR 29 196 -1384 6 806 2346 157 19 19 chr6 28979553 28979974 -120537063 - MTC LTR MaLR 0 421 1 6 806 1971 275 49 26 chr6 28979974 28980381 -120536656 + MTE-int LTR MaLR 197 613 -967 6 806 1380 63 0 0 chr6 28980635 28981018 -120536019 + (TG)n Simple_repeat Simple_repeat 1 383 0 6 806 374 294 32 105 chr6 28983395 28983585 -120533452 + MLT1I LTR MaLR 236 411 0 6 806 726 96 0 0 chr6 28984572 28984676 -120532361 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 806 1492 78 0 5 chr6 28984702 28984894 -120532143 + B2_Mm2 SINE B2 1 191 -4 6 806 380 71 18 0 chr6 28985099 28985155 -120531882 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 6 806 380 19 39 0 chr6 28985736 28985788 -120531249 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 806 895 134 15 0 chr6 28985788 28985922 -120531115 - B1_Mur3 SINE Alu -9 140 5 6 806 288 311 94 94 chr6 28986301 28986396 -120530641 + MLT1B LTR MaLR 87 167 -223 6 806 1400 80 16 11 chr6 28986396 28986586 -120530451 + B2_Mm2 SINE B2 3 193 -2 6 806 288 311 94 94 chr6 28986586 28986777 -120530260 + MLT1B LTR MaLR 168 373 -17 6 806 286 302 49 82 chr6 28986993 28987203 -120529834 + MIRc SINE MIR 43 237 -31 6 806 235 258 45 0 chr6 28987566 28987632 -120529405 + MIRb SINE MIR 189 257 -11 6 806 1336 63 51 0 chr6 28987759 28987934 -120529103 + B2_Mm2 SINE B2 1 184 -11 6 806 801 182 11 98 chr6 28988531 28988714 -120528323 - ORR1C1 LTR MaLR 0 384 218 6 806 482 156 44 7 chr6 28988732 28988868 -120528169 + GA-rich Low_complexity Low_complexity 1 141 0 6 806 1047 161 0 16 chr6 28988868 28989051 -120527986 - ORR1C1 LTR MaLR -198 180 1 6 806 522 0 0 0 chr6 28989900 28989958 -120527079 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 806 230 237 67 16 chr6 28990182 28990375 -120526662 + RMER17D LTR ERVK 231 433 -456 6 806 297 212 170 10 chr6 28990566 28990666 -120526371 + MIR3 SINE MIR 88 203 -5 6 806 351 0 0 0 chr6 28990669 28990708 -120526329 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 6 806 512 278 15 31 chr6 28990761 28990891 -120526146 - B1F1 SINE Alu 0 149 22 6 806 549 319 141 50 chr6 28991047 28991387 -120525650 + MLT2D LTR ERVL 1 371 -43 6 806 552 170 38 0 chr6 28991617 28991776 -120525261 + (CA)n Simple_repeat Simple_repeat 2 166 0 6 806 378 0 0 0 chr6 28991799 28991841 -120525196 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 806 359 317 134 12 chr6 28992309 28992555 -120524482 - L2c LINE L2 -80 3307 3032 6 806 1633 164 156 12 chr6 28992838 28993165 -120523872 - ORR1D1 LTR MaLR 0 374 1 6 806 477 318 43 31 chr6 28993210 28993372 -120523665 + RSINE1 SINE B4 2 165 0 6 806 435 38 0 0 chr6 28993404 28993457 -120523580 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 806 315 307 0 11 chr6 28994341 28994430 -120522607 + PB1D10 SINE Alu 10 97 -20 6 806 978 295 57 11 chr6 28994513 28994777 -120522260 + B4A SINE B4 11 286 -6 6 806 345 123 0 0 chr6 28994791 28994856 -120522181 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 806 477 286 89 35 chr6 28995150 28995407 -120521630 + MER67C LTR ERV1 425 695 -16 6 806 195 69 0 0 chr6 28995816 28995845 -120521192 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 6 806 468 0 0 0 chr6 28996352 28996404 -120520633 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 6 806 1113 97 0 0 chr6 28996404 28996549 -120520488 - B1_Mus1 SINE Alu -3 145 1 6 806 731 182 53 0 chr6 28997111 28997243 -120519794 + ID_B1 SINE B4 85 223 -1 6 806 1121 42 7 0 chr6 28997940 28998083 -120518954 + (TTC)n Simple_repeat Simple_repeat 1 144 0 6 806 351 0 0 0 chr6 28998091 28998130 -120518907 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6 806 1244 80 0 0 chr6 28998132 28998295 -120518742 - B2_Mm2 SINE B2 -31 164 2 6 806 2184 149 85 5 chr6 28998823 28999213 -120517824 - MTC LTR MaLR 0 421 1 6 806 480 322 79 19 chr6 28999324 28999590 -120517447 + L1ME4a LINE L1 5572 5853 -271 6 806 28 29 0 0 chr6 28999695 28999730 -120517307 + AT_rich Low_complexity Low_complexity 1 35 0 6 806 390 300 93 12 chr6 29000259 29000431 -120516606 - MIR SINE MIR -55 207 22 1 806 198 0 0 0 chr6 29001133 29001155 -120515882 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 2 806 180 0 0 0 chr6 29001422 29001442 -120515595 + (CCCCG)n Simple_repeat Simple_repeat 5 24 0 3 806 180 0 0 0 chr6 29002001 29002021 -120515016 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 806 339 294 177 23 chr6 29003835 29004135 -120512902 + L1MC4a LINE L1 5544 5889 -1993 5 806 4093 123 68 6 chr6 29004310 29004941 -120512096 - Lx4B LINE L1 -1 7057 6388 6 806 409 257 61 9 chr6 29005101 29005215 -120511822 + PB1D7 SINE Alu 1 120 0 7 806 616 201 89 7 chr6 29005218 29005353 -120511684 + B1_Mus1 SINE Alu 2 147 -1 8 806 201 197 0 0 chr6 29005358 29005419 -120511618 + A-rich Low_complexity Low_complexity 4 64 0 9 806 291 329 12 0 chr6 29005446 29005528 -120511509 + ID SINE ID 1 83 -141 1 806 186 43 0 0 chr6 29005539 29005562 -120511475 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 806 318 255 104 0 chr6 29005629 29005735 -120511302 - PB1D10 SINE Alu 0 117 1 1 806 232 281 31 15 chr6 29006003 29006068 -120510969 + BC1_Mm scRNA scRNA 2 67 -85 1 806 369 275 35 97 chr6 29006384 29006529 -120510508 - B1_Mur2 SINE Alu -3 146 11 1 806 335 262 183 12 chr6 29006966 29007217 -120509820 + L1MC5 LINE L1 7633 7926 -35 1 806 1781 300 42 24 chr6 29007227 29007818 -120509219 + Lx8 LINE L1 6238 6839 -634 1 806 1641 95 12 0 chr6 29007804 29008045 -120508992 + L1Md_F LINE L1 613 856 -5663 1 806 920 241 142 39 chr6 29008056 29008337 -120508700 + Lx8 LINE L1 6842 7151 -322 1 806 183 96 19 37 chr6 29008526 29008580 -120508457 + A-rich Low_complexity Low_complexity 2 54 0 1 806 327 233 125 10 chr6 29009074 29009178 -120507859 - Cheshire DNA MER1_type -35 2385 2270 1 806 371 229 80 111 chr6 29009174 29009336 -120507701 - Cheshire DNA MER1_type -2235 185 29 1 806 180 0 0 0 chr6 29009574 29009594 -120507443 + (A)n Simple_repeat Simple_repeat 1 20 0 2 806 183 42 0 0 chr6 29010760 29010784 -120506253 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 806 288 263 40 31 chr6 29012475 29012578 -120504459 + B1F2 SINE Alu 10 116 -1 2 806 292 254 16 0 chr6 29012650 29012713 -120504324 - L2b LINE L2 0 3375 3312 2 806 409 331 14 14 chr6 29012721 29012862 -120504175 - MER117 DNA MER1_type -55 142 2 2 806 387 0 0 0 chr6 29013104 29013147 -120503890 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 806 676 271 7 0 chr6 29013155 29013295 -120503742 - RSINE1 SINE B4 -23 142 2 2 806 277 247 192 0 chr6 29013361 29013434 -120503603 - RSINE1 SINE B4 -23 142 56 2 806 27 87 0 0 chr6 29013667 29013736 -120503301 + AT_rich Low_complexity Low_complexity 1 69 0 2 806 239 188 65 104 chr6 29013779 29013933 -120503104 + RLTR40 LTR ERVK 566 713 -104 2 806 591 265 44 25 chr6 29013888 29014047 -120502990 - B3A SINE B2 -35 163 2 3 806 2028 177 68 11 chr6 29014181 29014622 -120502415 - L1MA4 LINE L1 -425 5875 5410 3 806 499 259 14 56 chr6 29015874 29016012 -120501025 - PB1D7 SINE Alu 0 149 10 3 806 293 396 54 21 chr6 29016024 29016210 -120500827 - MLT1J LTR MaLR -316 196 5 3 806 314 290 21 11 chr6 29017050 29017144 -120499893 - Tigger7 DNA MER2_type -1 2490 2396 3 806 964 276 127 10 chr6 29017212 29017519 -120499518 - Tigger7 DNA MER2_type -2137 354 12 3 806 320 228 18 73 chr6 29017555 29017664 -120499373 + MIR SINE MIR 58 160 -102 3 806 212 323 93 39 chr6 29018166 29018295 -120498742 + L2c LINE L2 3183 3318 -69 3 806 1240 55 0 0 chr6 29019377 29019523 -120497514 + B1_Mm SINE Alu 2 147 0 3 806 297 296 117 73 chr6 29022950 29023267 -120493770 - MER46C DNA MER2_type 0 338 8 3 806 718 292 83 39 chr6 29024495 29024842 -120492195 - MLT1A0 LTR MaLR -1 466 5 3 806 227 212 157 36 chr6 29024892 29024975 -120492062 - LTR86A1 LTR ERVL -119 394 302 4 806 311 344 122 48 chr6 29025076 29025305 -120491732 - MLT1K LTR MaLR -160 435 190 4 806 432 0 0 0 chr6 29025431 29025479 -120491558 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 806 1097 266 99 26 chr6 29026125 29026469 -120490568 + ORR1D2 LTR MaLR 1 369 -1 4 806 423 56 0 0 chr6 29026695 29026749 -120490288 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 4 806 623 222 96 0 chr6 29026749 29026884 -120490153 - B1_Mur3 SINE Alu -1 148 1 4 806 240 253 0 0 chr6 29027589 29027680 -120489357 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 806 452 244 0 6 chr6 29027699 29027880 -120489157 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 806 273 109 0 0 chr6 29027926 29027972 -120489065 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 4 806 367 192 9 83 chr6 29028568 29028676 -120488361 - Lx6 LINE L1 -15 7445 7346 4 806 1328 168 67 176 chr6 29028781 29029201 -120487836 + ORR1D1 LTR MaLR 1 374 0 4 806 406 160 40 23 chr6 29030154 29030327 -120486710 + (CA)n Simple_repeat Simple_repeat 1 176 0 5 806 355 140 60 38 chr6 29030423 29030749 -120486288 + (CA)n Simple_repeat Simple_repeat 1 333 0 5 806 315 173 0 19 chr6 29030756 29030809 -120486228 + HAL1-3A_ME LINE L1 1975 2026 -832 5 806 335 237 237 0 chr6 29031490 29031621 -120485416 - RSINE1 SINE B4 -3 162 1 5 806 395 303 27 40 chr6 29031681 29031829 -120485208 + L2a LINE L2 3278 3423 -3 5 806 826 315 5 5 chr6 29032421 29032635 -120484402 - ID_B1 SINE B4 -8 216 3 5 806 195 129 0 0 chr6 29032635 29032666 -120484371 + (TTC)n Simple_repeat Simple_repeat 3 33 0 5 806 604 241 0 0 chr6 29032856 29032972 -120484065 - PB1D10 SINE Alu -1 116 1 5 806 464 315 75 63 chr6 29033210 29033464 -120483573 + MLT1H2 LTR MaLR 4 260 -229 5 806 596 252 29 158 chr6 29033522 29033603 -120483434 + MER74A LTR ERVL 117 189 -369 5 806 373 247 0 0 chr6 29033603 29033676 -120483361 - ID4_ SINE ID -9 74 2 6 806 596 252 29 158 chr6 29033676 29033692 -120483345 + MER74A LTR ERVL 190 190 -368 5 806 325 311 44 29 chr6 29033692 29033828 -120483209 - B1F SINE Alu -8 141 4 6 806 596 252 29 158 chr6 29033828 29033969 -120483068 + MER74A LTR ERVL 190 325 -233 5 806 1355 221 74 7 chr6 29034038 29034321 -120482716 + MTE2b LTR MaLR 76 377 -2 6 806 340 242 53 32 chr6 29034501 29034595 -120482442 - MLT1K LTR MaLR -338 257 162 6 806 277 225 212 0 chr6 29034778 29034858 -120482179 + PB1D7 SINE Alu 18 114 -6 6 806 239 229 98 0 chr6 29034967 29035028 -120482009 - RSINE1 SINE B4 -2 163 97 6 806 243 122 0 0 chr6 29035034 29035083 -120481954 + (T)n Simple_repeat Simple_repeat 1 49 0 6 806 502 178 0 43 chr6 29035083 29035177 -120481860 - RSINE1 SINE B4 -69 96 7 6 806 419 328 27 22 chr6 29035397 29035581 -120481456 - MIRc SINE MIR -1 267 83 6 806 239 191 29 87 chr6 29035601 29035670 -120481367 + Charlie24 DNA MER1_type 1434 1498 -952 6 806 423 0 0 0 chr6 29036847 29036894 -120480143 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 806 423 0 0 0 chr6 29036950 29036997 -120480040 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 806 1143 59 0 0 chr6 29037308 29037443 -120479594 + B1_Mus1 SINE Alu 2 136 -12 7 806 243 188 0 0 chr6 29037452 29037500 -120479537 + G-rich Low_complexity Low_complexity 3 50 0 7 806 233 179 0 0 chr6 29037524 29037563 -120479474 + MIR SINE MIR 37 75 -187 7 806 184 328 0 33 chr6 29037667 29037727 -120479310 - MIRb SINE MIR 0 268 211 7 806 258 341 12 12 chr6 29037735 29037818 -120479219 + PB1 SINE Alu 32 114 -13 7 806 426 276 70 38 chr6 29037847 29038005 -120479032 + RSINE1 SINE B4 3 165 0 7 806 408 71 0 0 chr6 29038739 29038795 -120478242 + (CAA)n Simple_repeat Simple_repeat 2 57 0 7 806 29 0 0 0 chr6 29038982 29039011 -120478026 + AT_rich Low_complexity Low_complexity 1 29 0 7 806 387 92 0 0 chr6 29039043 29039108 -120477929 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 806 726 12 0 0 chr6 29039139 29039222 -120477815 + (GAGAA)n Simple_repeat Simple_repeat 5 87 0 7 806 773 253 0 91 chr6 29039480 29039522 -120477515 + B3A SINE B2 6 42 -156 8 806 4498 91 3 0 chr6 29039522 29040104 -120476933 - MT2B2 LTR ERVL 0 584 1 8 806 773 245 13 107 chr6 29040104 29040294 -120476743 + B3A SINE B2 38 216 0 8 806 921 269 7 41 chr6 29041022 29041293 -120475744 + L1_Rod LINE L1 5412 5673 -174 8 806 960 131 0 21 chr6 29041371 29041512 -120475525 + B1_Mus2 SINE Alu 1 138 -9 8 806 201 39 0 0 chr6 29041512 29041538 -120475499 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 806 891 94 0 0 chr6 29041556 29041683 -120475354 + (GGA)n Simple_repeat Simple_repeat 1 127 0 8 806 297 364 33 8 chr6 29041867 29041989 -120475048 + MIR3 SINE MIR 81 205 -3 8 806 427 300 56 21 chr6 29043209 29043352 -120473685 + B3A SINE B2 45 192 -6 8 806 373 306 9 54 chr6 29044169 29044309 -120472728 - PB1D10 SINE Alu 0 149 6 8 806 234 108 0 119 chr6 29044551 29044635 -120472402 + A-rich Low_complexity Low_complexity 3 76 0 8 806 317 293 224 26 chr6 29044748 29045001 -120472036 + L1MB5 LINE L1 5869 6155 -29 9 806 1827 235 14 38 chr6 29045053 29045478 -120471559 - MTD LTR MaLR -1 418 4 9 806 915 285 8 31 chr6 29045478 29045730 -120471307 + B4A SINE B4 47 292 0 9 806 2841 32 0 0 chr6 29046741 29047079 -120469958 + ORR1A1 LTR MaLR 1 338 -8 9 806 14254 55 5 1 chr6 29047083 29048866 -120468171 + ORR1A1-int LTR MaLR 1 1789 -3 9 806 2298 30 15 105 chr6 29048867 29049128 -120467909 + ORR1A1 LTR MaLR 36 301 -45 9 806 1312 27 0 0 chr6 29049128 29049274 -120467763 + B1_Mus2 SINE Alu 2 147 0 9 806 2298 30 15 105 chr6 29049274 29049345 -120467692 + ORR1A1 LTR MaLR 302 338 -8 9 806 483 18 0 0 chr6 29049454 29049510 -120467527 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 806 301 262 50 0 chr6 29049637 29049717 -120467320 + MER63B DNA AcHobo 26 109 -327 9 806 559 208 121 19 chr6 29050145 29050168 -120466869 + CYRA11_Mm Unknown Y-chromosome 144 182 -435 9 806 929 89 82 0 chr6 29050168 29050303 -120466734 - URR1A DNA MER1_type 0 226 81 9 806 262 182 216 12 chr6 29051147 29051338 -120465699 + L1M4 LINE L1 5212 5453 -850 9 806 498 264 0 23 chr6 29051339 29051467 -120465570 - B1F SINE Alu -24 125 1 1 806 301 148 115 0 chr6 29051467 29051528 -120465509 + L1MD2 LINE L1 6289 6356 -3 1 806 390 319 237 15 chr6 29051545 29051870 -120465167 + L1MD2 LINE L1 5905 6301 -58 1 806 998 232 14 14 chr6 29051880 29052094 -120464943 - B3 SINE B2 0 216 3 1 806 479 267 86 0 chr6 29052222 29052338 -120464699 + MER63B DNA AcHobo 306 431 -5 9 806 433 286 24 56 chr6 29053095 29053221 -120463816 - B1F2 SINE Alu -9 140 19 1 806 518 301 0 0 chr6 29053118 29053231 -120463806 - ID_B1 SINE B4 -22 202 90 1 806 1659 21 16 0 chr6 29054228 29054417 -120462620 + B2_Mm1a SINE B2 2 193 0 1 806 207 100 0 0 chr6 29054580 29054610 -120462427 + (T)n Simple_repeat Simple_repeat 1 30 0 1 806 391 224 0 56 chr6 29056747 29056837 -120460200 + PB1D10 SINE Alu 33 117 0 1 806 358 325 115 56 chr6 29057051 29057264 -120459773 - MLT1G LTR MaLR -299 292 67 1 806 756 202 0 0 chr6 29057264 29057383 -120459654 + B1_Mur2 SINE Alu 2 120 -29 1 806 247 203 0 28 chr6 29057401 29057472 -120459565 + GA-rich Low_complexity Low_complexity 2 70 0 1 806 286 333 64 88 chr6 29057672 29057797 -120459240 + LTR16A LTR ERVL 207 328 -123 1 806 246 305 20 54 chr6 29058099 29058248 -120458789 - L1M5 LINE L1 -383 5741 5598 1 806 247 273 115 8 chr6 29058404 29058526 -120458511 + L1M5 LINE L1 4233 4367 -1779 1 806 747 175 34 20 chr6 29058859 29059005 -120458032 + B1_Mur1 SINE Alu 1 148 -1 1 806 265 272 11 80 chr6 29059185 29059273 -120457764 + MLT1C LTR MaLR 53 134 -333 1 806 256 254 16 16 chr6 29059309 29059373 -120457664 + ID SINE ID 3 66 -158 1 806 693 273 53 5 chr6 29059512 29059700 -120457337 - B3A SINE B2 -1 197 1 1 806 533 349 108 98 chr6 29059707 29060104 -120456933 - MER74B LTR ERVL -67 555 155 1 806 530 131 12 0 chr6 29060131 29060215 -120456822 + URR1A DNA MER1_type 73 157 -69 1 806 593 15 0 0 chr6 29060215 29060281 -120456756 - L1Md_F2 LINE L1 -567 6015 5950 1 806 4662 41 16 2 chr6 29060281 29060849 -120456188 + L1Md_F2 LINE L1 6003 6578 -4 1 806 488 101 12 48 chr6 29060850 29060933 -120456104 + URR1A DNA MER1_type 145 224 -2 1 806 269 274 48 10 chr6 29060934 29061037 -120456000 - MER74B LTR ERVL -461 161 55 1 806 1282 262 42 47 chr6 29061092 29061473 -120455564 + MTE2a LTR MaLR 1 379 0 1 806 391 287 81 60 chr6 29061545 29061730 -120455307 + RMER5 LTR ERV1 323 511 -23 1 806 713 250 15 30 chr6 29062038 29062236 -120454801 - B3A SINE B2 -2 196 2 1 806 680 179 97 0 chr6 29062891 29063025 -120454012 - B1_Mur2 SINE Alu -1 148 2 1 806 207 0 0 0 chr6 29063144 29063167 -120453870 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 806 508 241 72 78 chr6 29063197 29063350 -120453687 + RSINE1 SINE B4 12 163 -2 1 806 37 0 0 0 chr6 29063360 29063397 -120453640 + AT_rich Low_complexity Low_complexity 1 37 0 1 806 941 185 0 12 chr6 29063442 29063606 -120453431 - U1 snRNA snRNA -3 162 1 1 806 532 250 23 46 chr6 29063779 29063909 -120453128 + B1_Mur1 SINE Alu 22 148 -1 1 806 927 49 14 7 chr6 29063936 29064079 -120452958 + (TAGA)n Simple_repeat Simple_repeat 3 146 0 1 806 575 62 0 12 chr6 29064091 29064172 -120452865 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 1 806 598 211 229 16 chr6 29064233 29064416 -120452621 + ID_B1 SINE B4 3 224 0 1 806 740 147 84 1 chr6 29064293 29064426 -120452611 + B1_Mur1 SINE Alu 16 149 0 1 806 253 278 31 102 chr6 29064870 29064962 -120452075 + RSINE1 SINE B4 3 91 -74 1 806 1236 102 5 31 chr6 29064962 29065154 -120451883 + B2_Mm2 SINE B2 1 187 -8 1 806 253 278 31 102 chr6 29065154 29065187 -120451850 + RSINE1 SINE B4 92 119 -46 1 806 434 211 0 0 chr6 29065187 29065263 -120451774 + B3A SINE B2 1 76 -122 1 806 497 299 18 43 chr6 29065362 29065526 -120451511 - RSINE1 SINE B4 -3 162 3 1 806 22 0 0 0 chr6 29065634 29065656 -120451381 + AT_rich Low_complexity Low_complexity 1 22 0 1 806 338 88 53 0 chr6 29065728 29065785 -120451252 + (TAAAA)n Simple_repeat Simple_repeat 2 61 0 1 806 225 0 0 0 chr6 29066229 29066254 -120450783 + (CAGG)n Simple_repeat Simple_repeat 3 27 0 1 806 369 0 0 0 chr6 29068006 29068047 -120448990 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 806 21 36 0 0 chr6 29068152 29068180 -120448857 + AT_rich Low_complexity Low_complexity 1 28 0 1 806 694 249 94 5 chr6 29068242 29068444 -120448593 + ID_B1 SINE B4 1 220 -4 1 806 392 252 30 10 chr6 29069327 29069427 -120447610 + B1F1 SINE Alu 7 108 -41 1 806 404 238 82 56 chr6 29069438 29069634 -120447403 - MER63D DNA AcHobo -17 1044 844 1 806 239 214 18 18 chr6 29070592 29070649 -120446388 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 1 806 1165 55 7 0 chr6 29071219 29071364 -120445673 + B1_Mm SINE Alu 2 147 0 1 806 1064 114 0 26 chr6 29072246 29072399 -120444638 + B1_Mur4 SINE Alu 1 149 -1 1 806 3450 33 2 2 chr6 29073520 29073920 -120443117 - MTB LTR MaLR 0 400 1 1 806 621 124 0 0 chr6 29075548 29075645 -120441392 + (GCTG)n Simple_repeat Simple_repeat 3 99 0 1 806 247 231 0 30 chr6 29075650 29075717 -120441320 + CT-rich Low_complexity Low_complexity 1 65 0 1 806 1125 218 0 5 chr6 29076073 29076290 -120440747 + B3 SINE B2 1 216 0 1 806 239 340 196 0 chr6 29076321 29076474 -120440563 + L1MC5 LINE L1 6792 6974 -1068 1 806 230 250 0 0 chr6 29076769 29076825 -120440212 + L1MC5 LINE L1 7158 7213 -748 1 806 236 238 206 0 chr6 29076853 29076916 -120440121 + ID4 SINE ID 4 79 -4 1 806 189 0 0 0 chr6 29076919 29076940 -120440097 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 806 257 292 92 71 chr6 29077086 29077454 -120439583 + L1MC5 LINE L1 7306 7681 -280 1 806 453 36 0 0 chr6 29077454 29077509 -120439528 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 806 304 283 79 20 chr6 29078936 29079037 -120438000 + PB1D10 SINE Alu 2 108 -9 1 806 562 285 86 33 chr6 29079200 29079381 -120437656 + L1MCa LINE L1 2059 2208 -4827 1 806 1027 97 114 6 chr6 29079381 29079547 -120437490 + B2_Mm2 SINE B2 2 185 -10 1 806 405 0 0 0 chr6 29079548 29079593 -120437444 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 1 806 562 283 83 23 chr6 29079593 29079717 -120437320 + L1MCa LINE L1 2209 2336 -4699 1 806 923 250 30 8 chr6 29079805 29080039 -120436998 + ORR1D2 LTR MaLR 132 370 0 1 806 190 236 271 9 chr6 29080524 29080631 -120436406 - MIRc SINE MIR -90 178 44 1 806 272 250 0 0 chr6 29080673 29080737 -120436300 + PB1D10 SINE Alu 45 108 -9 1 806 248 255 140 47 chr6 29080954 29080989 -120436048 + B4 SINE B4 49 93 -199 1 806 347 208 143 0 chr6 29080989 29081066 -120435971 + PB1D9 SINE Alu 2 89 -31 1 806 589 212 75 62 chr6 29081073 29081234 -120435803 + RSINE1 SINE B4 3 165 0 1 806 2604 89 15 128 chr6 29081864 29082339 -120434698 - BGLII LTR ERVK 0 421 1 1 806 365 201 116 75 chr6 29082343 29082525 -120434512 - B3 SINE B2 -2 214 2 1 806 1139 249 172 21 chr6 29083091 29083574 -120433463 - RMER15 LTR ERVL -18 557 2 1 806 2205 53 74 0 chr6 29084130 29084429 -120432608 + ORR1A2 LTR MaLR 1 321 -6 1 806 340 222 71 47 chr6 29084432 29084517 -120432520 + B4 SINE B4 35 121 -171 1 806 212 202 35 23 chr6 29084663 29084749 -120432288 + CT-rich Low_complexity Low_complexity 3 89 0 1 806 195 242 0 3 chr6 29084871 29084916 -120432121 + L2b LINE L2 3334 3383 -4 1 806 1162 82 0 0 chr6 29084975 29085121 -120431916 + B1_Mus1 SINE Alu 2 147 -1 1 806 981 107 0 0 chr6 29085165 29085314 -120431723 + (GAAA)n Simple_repeat Simple_repeat 2 150 0 1 806 1180 68 0 7 chr6 29085893 29086042 -120430995 + B1_Mus1 SINE Alu 1 148 0 1 806 1016 115 0 33 chr6 29086112 29086265 -120430772 - B1_Mus1 SINE Alu 0 148 1 1 806 21 0 0 0 chr6 29086486 29086507 -120430530 + AT_rich Low_complexity Low_complexity 1 21 0 1 806 577 237 44 25 chr6 29086658 29086818 -120430219 - RSINE1 SINE B4 0 165 3 1 806 794 276 64 0 chr6 29086853 29087056 -120429981 + ID_B1 SINE B4 9 224 0 1 806 1249 48 0 0 chr6 29089195 29089342 -120427695 + B1_Mus2 SINE Alu 1 147 0 1 806 184 222 0 0 chr6 29089406 29089442 -120427595 + MIRb SINE MIR 213 248 -20 1 806 29 47 0 0 chr6 29090072 29090115 -120426922 + AT_rich Low_complexity Low_complexity 1 43 0 1 806 309 127 127 0 chr6 29090149 29090212 -120426825 - B3 SINE B2 -86 130 60 1 806 378 0 0 0 chr6 29090213 29090255 -120426782 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 806 1065 214 41 37 chr6 29090276 29090547 -120426490 - RLTR40 LTR ERVK -545 272 1 1 806 205 327 48 38 chr6 29090801 29090906 -120426131 - L2c LINE L2 -165 3222 3117 1 806 1082 114 8 6 chr6 29091011 29091199 -120425838 - B2_Mm2 SINE B2 -2 191 2 1 806 628 236 83 1 chr6 29091318 29091509 -120425528 + RLTR40 LTR ERVK 475 758 -59 1 806 660 236 68 0 chr6 29091510 29091658 -120425379 + MER2B DNA MER2_type 179 336 0 1 806 653 202 0 0 chr6 29091738 29091857 -120425180 + PB1D9 SINE Alu 2 120 0 1 806 594 63 0 0 chr6 29091865 29091944 -120425093 + (GGGAGA)n Simple_repeat Simple_repeat 1 79 0 1 806 615 312 102 48 chr6 29092655 29092968 -120424069 + MTEb LTR MaLR 1 330 -49 1 806 203 265 0 39 chr6 29094480 29094531 -120422506 + G-rich Low_complexity Low_complexity 3 51 0 1 806 670 296 26 7 chr6 29094595 29094748 -120422289 - RSINE1 SINE B4 -1 164 9 1 806 222 108 0 75 chr6 29094884 29094924 -120422113 + ID SINE ID 1 37 -187 1 806 438 147 36 38 chr6 29094927 29095036 -120422001 - MTD LTR MaLR 0 419 299 1 806 797 246 104 113 chr6 29096474 29097112 -120419925 + RLTR19-int LTR ERVK 2506 3067 -3070 1 806 1087 59 7 0 chr6 29097219 29097354 -120419683 + B1_Mus1 SINE Alu 2 137 -11 2 807 269 270 0 0 chr6 29098258 29098321 -120418716 + MER50-int LTR ERV1 3498 3560 -3645 2 807 11432 121 53 15 chr6 29098390 29100281 -120416756 + ORR1A2-int LTR MaLR 1 1963 0 2 807 1780 121 40 129 chr6 29100281 29100550 -120416487 + ORR1A2 LTR MaLR 1 270 -57 2 807 1269 34 0 0 chr6 29100550 29100698 -120416339 + B1_Mus1 SINE Alu 1 148 0 2 807 1780 121 40 129 chr6 29100698 29100778 -120416259 + ORR1A2 LTR MaLR 271 319 -8 2 807 315 320 31 0 chr6 29101948 29101966 -120415071 - RSINE1 SINE B4 -65 100 3 2 807 558 117 0 0 chr6 29101966 29102043 -120414994 - B3 SINE B2 -138 78 2 2 807 245 329 0 24 chr6 29102145 29102229 -120414808 + G-rich Low_complexity Low_complexity 1 82 0 2 807 212 0 36 0 chr6 29102374 29102402 -120414635 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 807 299 286 0 0 chr6 29102538 29102601 -120414436 + ID4_ SINE ID 1 63 -20 2 807 383 296 27 27 chr6 29102941 29103052 -120413985 + PB1D10 SINE Alu 6 116 -1 2 807 398 384 57 40 chr6 29103511 29103864 -120413173 + MLT1A LTR MaLR 2 360 -14 2 807 183 42 0 0 chr6 29103960 29103984 -120413053 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 807 512 265 33 65 chr6 29104174 29104388 -120412649 + ID_B1 SINE B4 12 218 -6 2 807 379 206 92 10 chr6 29104463 29104561 -120412476 + ID_B1 SINE B4 116 221 -3 2 807 208 240 0 0 chr6 29105068 29105118 -120411919 + (CAT)n Simple_repeat Simple_repeat 3 52 0 2 807 610 289 90 0 chr6 29105315 29105526 -120411511 + MER2 DNA MER2_type 1 230 -115 2 807 1833 116 112 12 chr6 29105523 29105846 -120411191 + ORR1B2 LTR MaLR 5 359 -8 2 807 876 233 49 15 chr6 29106241 29106446 -120410591 - B3 SINE B2 -3 213 2 2 807 808 189 0 0 chr6 29106768 29106900 -120410137 + B1_Mur3 SINE Alu 5 136 -13 2 807 181 0 33 33 chr6 29106900 29106930 -120410107 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2 807 291 243 0 41 chr6 29107334 29107407 -120409630 + PB1D10 SINE Alu 48 117 0 2 807 961 112 123 6 chr6 29107518 29107680 -120409357 + B2_Mm2 SINE B2 1 181 -14 2 807 451 223 43 0 chr6 29107946 29108040 -120408997 + ID_B1 SINE B4 105 202 -22 2 807 703 169 86 29 chr6 29108642 29108782 -120408255 + B1_Mus1 SINE Alu 1 148 0 2 807 287 212 134 116 chr6 29109121 29109233 -120407804 + PB1D7 SINE Alu 1 114 -6 2 807 249 33 0 0 chr6 29109337 29109367 -120407670 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 2 807 457 265 34 17 chr6 29109393 29109512 -120407525 - RSINE1 SINE B4 -29 136 16 2 807 985 165 57 52 chr6 29110863 29111074 -120405963 + B3 SINE B2 1 212 -4 2 807 1170 99 20 113 chr6 29111082 29111245 -120405792 - B2_Mm2 SINE B2 -9 186 41 2 807 1572 46 0 5 chr6 29111245 29111440 -120405597 - B2_Mm2 SINE B2 0 195 2 2 807 1170 99 20 113 chr6 29111440 29111480 -120405557 - B2_Mm2 SINE B2 -155 40 2 2 807 267 31 0 0 chr6 29111549 29111581 -120405456 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 807 1514 213 30 120 chr6 29111749 29112289 -120404748 + RLTR16 LTR ERVK 1 491 -14 2 807 492 58 0 0 chr6 29112797 29112866 -120404171 - B1_Mus2 SINE Alu -77 70 2 2 807 434 274 26 0 chr6 29112900 29113013 -120404024 - PB1D10 SINE Alu 0 117 2 2 807 614 153 137 22 chr6 29113121 29113345 -120403692 - RMER6A LTR ERVK -459 297 1 2 807 289 271 188 65 chr6 29113470 29113731 -120403306 + L2a LINE L2 3134 3426 0 2 807 240 354 47 52 chr6 29113770 29113961 -120403076 + MIRb SINE MIR 77 266 -2 2 807 585 186 14 31 chr6 29113976 29114118 -120402919 - B1F SINE Alu -3 146 1 2 807 407 239 0 52 chr6 29114298 29114413 -120402624 + PB1D9 SINE Alu 11 119 -1 2 807 202 311 16 28 chr6 29115192 29115319 -120401718 - L2b LINE L2 -2 3385 3234 2 807 330 26 0 0 chr6 29115673 29115712 -120401325 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 2 807 1053 72 0 0 chr6 29115998 29116136 -120400901 + B1_Mus1 SINE Alu 5 142 -6 2 807 225 0 0 0 chr6 29116258 29116283 -120400754 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 2 807 1276 80 32 11 chr6 29117119 29117308 -120399729 - B2_Mm2 SINE B2 -1 194 2 2 807 192 97 0 0 chr6 29117313 29117344 -120399693 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 2 807 225 108 0 0 chr6 29118299 29118336 -120398701 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 807 468 0 0 0 chr6 29118336 29118387 -120398650 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 807 203 0 37 0 chr6 29121607 29121634 -120395403 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 2 807 187 392 32 0 chr6 29121885 29122010 -120395027 + L2a LINE L2 3297 3425 -1 2 807 270 206 159 22 chr6 29122009 29122120 -120394917 - MIRc SINE MIR -57 151 19 2 807 650 253 37 21 chr6 29123411 29123601 -120393436 - B3A SINE B2 -5 193 1 2 807 233 325 13 0 chr6 29124687 29124764 -120392273 + MamRep38 DNA hAT 1 78 -217 2 807 622 266 32 21 chr6 29124901 29125089 -120391948 + ID_B1 SINE B4 35 230 -62 2 807 366 23 0 0 chr6 29125114 29125157 -120391880 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 807 336 24 0 0 chr6 29125844 29125885 -120391152 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 807 206 250 39 0 chr6 29125897 29125949 -120391088 - MIRc SINE MIR -110 158 105 2 807 217 294 118 0 chr6 29128215 29128283 -120388754 - L2a LINE L2 -14 3412 3337 2 807 180 0 0 0 chr6 29128668 29128688 -120388349 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 807 525 16 0 0 chr6 29128789 29128851 -120388186 + (TC)n Simple_repeat Simple_repeat 2 63 0 2 807 25 51 0 0 chr6 29129322 29129361 -120387676 + GC_rich Low_complexity Low_complexity 1 39 0 2 807 220 296 0 0 chr6 29129676 29129730 -120387307 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 807 815 37 0 0 chr6 29130281 29130388 -120386649 + B1_Mm SINE Alu 41 147 0 2 807 233 191 0 0 chr6 29130481 29130523 -120386514 + (CG)n Simple_repeat Simple_repeat 1 42 0 2 807 225 0 0 0 chr6 29130523 29130548 -120386489 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 807 222 37 0 0 chr6 29130548 29130575 -120386462 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 2 807 341 271 52 0 chr6 29130576 29130672 -120386365 + PB1D9 SINE Alu 19 119 -1 2 807 290 286 9 87 chr6 29130758 29130873 -120386164 + ID_B1 SINE B4 108 213 -11 2 807 564 344 111 21 chr6 29131438 29131815 -120385222 + HAL1 LINE L1 1 411 -2096 2 807 2158 83 19 0 chr6 29131923 29132236 -120384801 - ORR1A2 LTR MaLR -8 319 1 2 807 433 285 133 53 chr6 29132236 29132462 -120384575 + HAL1 LINE L1 520 763 -1744 2 807 807 182 14 0 chr6 29132492 29132635 -120384402 - B1_Mur3 SINE Alu -2 147 3 2 807 11691 148 58 17 chr6 29132688 29134377 -120382660 + Lx6 LINE L1 298 2068 -3812 2 807 201 74 0 0 chr6 29134377 29134404 -120382633 + (CCA)n Simple_repeat Simple_repeat 3 29 0 2 807 11691 139 52 30 chr6 29134404 29135445 -120381592 + Lx6 LINE L1 2069 3126 -2754 2 807 195 42 0 0 chr6 29135445 29135469 -120381568 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 807 11691 139 52 30 chr6 29135469 29135662 -120381375 + Lx6 LINE L1 3127 3330 -2550 2 807 1166 48 0 0 chr6 29135662 29135807 -120381230 + B1_Mm SINE Alu 3 147 0 2 807 11691 139 52 30 chr6 29135807 29136130 -120380907 + Lx6 LINE L1 3331 3659 -2221 2 807 7859 144 51 37 chr6 29136128 29136612 -120380425 + Lx6 LINE L1 4238 4738 -1142 2 807 1205 27 0 7 chr6 29136612 29136759 -120380278 + B1_Mus2 SINE Alu 1 146 -1 2 807 7859 144 51 37 chr6 29136759 29137296 -120379741 + Lx6 LINE L1 4739 5287 -593 2 807 261 0 0 0 chr6 29137296 29137325 -120379712 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 807 7859 144 51 37 chr6 29137325 29137826 -120379211 + Lx6 LINE L1 5288 5788 -92 2 807 513 47 0 0 chr6 29137826 29137890 -120379147 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 807 7859 144 51 37 chr6 29137890 29137947 -120379090 + Lx6 LINE L1 5789 5840 -40 2 807 737 232 0 13 chr6 29138347 29138500 -120378537 + Lx6 LINE L1 5846 5996 -1464 2 807 649 164 102 22 chr6 29138582 29138719 -120378318 - B1_Mur1 SINE Alu -1 148 1 2 807 488 273 57 52 chr6 29138723 29138916 -120378121 - B3A SINE B2 -4 194 1 2 807 381 313 30 0 chr6 29139550 29139649 -120377388 - PB1D10 SINE Alu -3 114 13 2 807 360 330 101 54 chr6 29139708 29140096 -120376941 + L1ME4a LINE L1 5680 6085 -39 2 807 614 245 102 5 chr6 29140132 29140329 -120376708 - B3 SINE B2 0 216 1 2 807 252 59 0 0 chr6 29140427 29140461 -120376576 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 807 1605 133 97 40 chr6 29140483 29140804 -120376233 - MTC LTR MaLR 0 421 83 2 807 3145 171 92 40 chr6 29140813 29141556 -120375481 - RMER1B Other Other -11 1055 106 2 807 463 179 32 0 chr6 29141561 29141656 -120375381 - MTC LTR MaLR -323 98 1 2 807 573 42 0 0 chr6 29142418 29142490 -120374547 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 807 525 104 0 0 chr6 29143407 29143484 -120373553 + (TCC)n Simple_repeat Simple_repeat 2 78 0 2 807 330 261 0 0 chr6 29143484 29143553 -120373484 - ID4 SINE ID -13 70 2 2 807 272 299 102 9 chr6 29143562 29143670 -120373367 - PB1 SINE Alu -7 120 3 2 807 651 235 164 22 chr6 29144848 29145031 -120372006 - ID_B1 SINE B4 0 224 16 2 807 666 323 189 12 chr6 29145490 29145919 -120371118 + MLT1D LTR MaLR 1 505 0 2 807 414 0 0 0 chr6 29146265 29146311 -120370726 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 807 401 297 63 25 chr6 29146341 29146500 -120370537 + MIRb SINE MIR 20 184 -84 2 807 423 0 0 0 chr6 29146798 29146845 -120370192 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 807 234 0 0 0 chr6 29146847 29146873 -120370164 + (CAGT)n Simple_repeat Simple_repeat 1 26 0 2 807 454 343 147 5 chr6 29147102 29147483 -120369554 - L2 LINE L2 -412 3007 2573 2 807 500 100 23 70 chr6 29150315 29150401 -120366636 + B1_Mus2 SINE Alu 2 83 -37 2 807 243 0 0 0 chr6 29152107 29152134 -120364903 + (CCTG)n Simple_repeat Simple_repeat 1 27 0 2 807 193 308 64 0 chr6 29154149 29154227 -120362810 - L2b LINE L2 -84 3291 3209 2 807 198 0 0 0 chr6 29154244 29154266 -120362771 + (TCC)n Simple_repeat Simple_repeat 3 24 0 3 807 1178 34 0 0 chr6 29156555 29156702 -120360335 + B1_Mus2 SINE Alu 1 147 0 3 807 428 200 116 0 chr6 29157400 29157495 -120359542 + ID_B1 SINE B4 99 204 -20 3 807 285 271 47 12 chr6 29159614 29159700 -120357337 - ID_B1 SINE B4 -7 217 129 3 807 328 273 91 0 chr6 29159738 29159837 -120357200 - PB1D10 SINE Alu -9 108 1 3 807 717 212 0 27 chr6 29159854 29160004 -120357033 + B1_Mur1 SINE Alu 4 149 0 3 807 235 206 62 16 chr6 29160063 29160127 -120356910 + B4A SINE B4 89 155 -137 3 807 419 216 102 10 chr6 29160072 29160170 -120356867 + PB1D7 SINE Alu 14 120 0 3 807 341 309 0 0 chr6 29160192 29160273 -120356764 + ID4 SINE ID 3 83 0 3 807 1190 48 0 0 chr6 29160857 29161004 -120356033 + B1_Mus2 SINE Alu 1 147 0 3 807 189 0 0 0 chr6 29161004 29161025 -120356012 + (A)n Simple_repeat Simple_repeat 1 21 0 3 807 21 57 0 0 chr6 29161999 29162034 -120355003 + GC_rich Low_complexity Low_complexity 1 35 0 3 807 215 152 22 0 chr6 29162208 29162254 -120354783 + (CCG)n Simple_repeat Simple_repeat 3 49 0 3 807 22 80 0 0 chr6 29162284 29162334 -120354703 + GC_rich Low_complexity Low_complexity 1 50 0 3 807 261 83 0 0 chr6 29162827 29162863 -120354174 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 807 258 32 0 0 chr6 29163010 29163041 -120353996 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 807 1010 193 68 19 chr6 29167097 29167303 -120349734 + B3 SINE B2 1 216 0 3 807 1699 150 57 198 chr6 29167358 29167670 -120349367 + MTC LTR MaLR 1 291 -130 3 807 1258 20 0 20 chr6 29167670 29167819 -120349218 + B1_Mm SINE Alu 2 147 0 3 807 1699 150 57 198 chr6 29167819 29167996 -120349041 + MTC LTR MaLR 292 421 0 3 807 611 212 8 0 chr6 29167996 29168114 -120348923 + B1_Mur1 SINE Alu 21 139 -10 3 807 390 21 0 0 chr6 29168114 29168161 -120348876 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 807 993 79 0 0 chr6 29168168 29168308 -120348729 + (GAAA)n Simple_repeat Simple_repeat 2 141 0 3 807 218 259 0 69 chr6 29168335 29168393 -120348644 + PB1 SINE Alu 11 64 -63 3 807 1610 170 7 68 chr6 29168399 29168695 -120348342 + ORR1A4 LTR MaLR 1 278 -51 3 807 3789 25 0 0 chr6 29168695 29169130 -120347907 + L1Md_F2 LINE L1 5151 5585 -298 3 807 8270 43 1 11 chr6 29169131 29170137 -120346900 + L1Md_F2 LINE L1 5587 6582 0 3 807 450 55 0 0 chr6 29170137 29170192 -120346845 + ORR1A4 LTR MaLR 275 329 0 3 807 10144 114 34 104 chr6 29170192 29171323 -120345714 + ORR1A4-int LTR MaLR 1 1040 -923 3 807 1206 48 7 0 chr6 29171323 29171470 -120345567 + B1_Mus1 SINE Alu 1 148 0 3 807 10144 111 58 67 chr6 29171470 29172314 -120344723 + ORR1A4-int LTR MaLR 1002 1769 -194 3 807 940 79 35 7 chr6 29172611 29172752 -120344285 - B2_Mm2 SINE B2 -5 190 46 3 807 232 236 76 89 chr6 29173174 29173253 -120343784 + LTR28 LTR ERV1 580 657 -363 3 807 252 239 0 112 chr6 29173253 29173333 -120343704 + RNERVK23-int LTR ERVK 7466 7536 -681 3 807 1671 167 232 17 chr6 29173484 29173590 -120343447 + RLTR23 LTR ERV1 1 167 -263 3 807 396 0 0 0 chr6 29173590 29173634 -120343403 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 807 1671 167 232 17 chr6 29173634 29173881 -120343156 + RLTR23 LTR ERV1 168 429 -1 3 807 347 68 0 0 chr6 29173881 29173925 -120343112 + ORR1A4 LTR MaLR 286 329 0 3 807 225 301 0 0 chr6 29173938 29173956 -120343081 + A-rich Low_complexity Low_complexity 1 18 0 3 807 725 128 118 15 chr6 29173956 29174091 -120342946 + B1_Mur3 SINE Alu 1 149 0 3 807 225 301 0 0 chr6 29174091 29174155 -120342882 + A-rich Low_complexity Low_complexity 19 82 0 3 807 311 164 26 35 chr6 29174231 29174307 -120342730 - B1F SINE Alu -73 76 1 3 807 262 264 13 37 chr6 29174307 29174328 -120342709 - ID_B1 SINE B4 -62 138 62 3 807 241 186 16 48 chr6 29174425 29174487 -120342550 - L1MA5 LINE L1 -369 5931 5872 3 807 423 0 0 0 chr6 29174502 29174549 -120342488 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 807 969 237 43 14 chr6 29174552 29174762 -120342275 - ID_B1 SINE B4 -7 217 2 3 807 569 106 21 0 chr6 29174764 29174858 -120342179 + (TTTC)n Simple_repeat Simple_repeat 3 98 0 3 807 680 194 58 6 chr6 29174858 29175024 -120342013 - B2_Mm2 SINE B2 -27 189 7 3 807 489 76 0 0 chr6 29175088 29175154 -120341883 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 807 643 266 86 0 chr6 29175166 29175305 -120341732 - RSINE1 SINE B4 -12 153 3 3 807 432 0 0 0 chr6 29175331 29175379 -120341658 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 807 1728 182 32 105 chr6 29175390 29175790 -120341247 - ORR1C2 LTR MaLR -4 380 10 3 807 553 311 0 0 chr6 29175795 29175917 -120341120 + B1F SINE Alu 13 134 -15 3 807 255 31 0 0 chr6 29175926 29175958 -120341079 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 807 787 167 14 21 chr6 29176012 29176153 -120340884 + B1_Mur3 SINE Alu 2 141 -8 3 807 1326 82 27 21 chr6 29176163 29176349 -120340688 + B2_Mm2 SINE B2 1 187 -8 3 807 973 234 25 0 chr6 29176388 29176589 -120340448 + B3 SINE B2 11 216 0 3 807 198 250 125 0 chr6 29176997 29177077 -120339960 + MIR SINE MIR 118 207 -55 3 807 2817 57 81 3 chr6 29177138 29177509 -120339528 + MTB LTR MaLR 1 400 0 3 807 189 0 0 0 chr6 29177820 29177841 -120339196 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 3 807 868 252 14 55 chr6 29178087 29178305 -120338732 - ID_B1 SINE B4 -6 218 10 3 807 269 350 89 24 chr6 29178307 29178430 -120338607 + MER20 DNA MER1_type 51 181 -38 3 807 641 240 0 8 chr6 29178466 29178596 -120338441 + ID_B1 SINE B4 81 209 -15 3 807 332 141 0 30 chr6 29178629 29178695 -120338342 + GA-rich Low_complexity Low_complexity 2 65 0 3 807 617 206 0 17 chr6 29179595 29179773 -120337264 + (CACTA)n Simple_repeat Simple_repeat 2 176 0 3 807 337 169 24 0 chr6 29179810 29179893 -120337144 + (CACTA)n Simple_repeat Simple_repeat 5 89 0 3 807 480 238 35 14 chr6 29179975 29180120 -120336917 + B1F SINE Alu 2 149 0 3 807 192 77 0 0 chr6 29180376 29180402 -120336635 + (CACTA)n Simple_repeat Simple_repeat 2 27 0 3 807 401 77 634 21 chr6 29180696 29180789 -120336248 + B1_Mur4 SINE Alu 1 150 0 3 807 216 0 0 0 chr6 29180827 29180851 -120336186 + (GGAGA)n Simple_repeat Simple_repeat 3 26 0 3 807 1172 106 6 0 chr6 29180853 29181032 -120336005 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 3 807 471 295 21 21 chr6 29181336 29181478 -120335559 + B1F SINE Alu 6 147 -2 3 807 331 191 204 45 chr6 29182104 29182192 -120334845 + B1F SINE Alu 13 143 -6 3 807 250 297 16 0 chr6 29183285 29183349 -120333688 - B1F SINE Alu -82 67 3 3 807 586 152 18 62 chr6 29183376 29183488 -120333549 - B1_Mur2 SINE Alu -1 148 42 3 807 1118 157 0 7 chr6 29183491 29183768 -120333269 + (TCTCTG)n Simple_repeat Simple_repeat 1 275 0 3 807 291 169 0 33 chr6 29183770 29183831 -120333206 - B1_Mus2 SINE Alu -88 59 1 3 807 236 242 0 46 chr6 29183774 29183839 -120333198 - B4A SINE B4 -150 142 81 3 807 225 0 0 0 chr6 29183854 29183879 -120333158 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 807 262 241 0 0 chr6 29183909 29183963 -120333074 - B3A SINE B2 -79 119 66 3 807 366 23 0 0 chr6 29183963 29184006 -120333031 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 807 455 325 57 44 chr6 29184040 29184288 -120332749 - L1M5 LINE L1 -364 5815 5565 3 807 2825 194 93 26 chr6 29184984 29185871 -120331166 + RMER1B Other Other 45 1048 -18 3 807 535 189 53 26 chr6 29185885 29185999 -120331038 + PB1D7 SINE Alu 1 117 -3 3 807 1267 34 0 0 chr6 29186168 29186315 -120330722 - B1_Mm SINE Alu 0 147 1 3 807 2426 62 3 27 chr6 29186342 29186674 -120330363 - L1Md_F2 LINE L1 -3 6579 6256 3 807 2183 76 79 0 chr6 29186674 29186964 -120330073 + L1Md_F2 LINE L1 5943 6255 -327 3 807 386 211 139 24 chr6 29187187 29187320 -120329717 - B1F1 SINE Alu -1 148 3 3 807 946 141 6 40 chr6 29187413 29187590 -120329447 + ORR1C2 LTR MaLR 1 171 -213 3 807 812 186 32 68 chr6 29187581 29187734 -120329303 + B2_Mm2 SINE B2 13 161 -34 3 807 480 18 0 0 chr6 29187734 29187791 -120329246 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 3 807 812 186 32 68 chr6 29187791 29187827 -120329210 + B2_Mm2 SINE B2 162 195 0 3 807 1278 163 30 30 chr6 29187825 29188059 -120328978 + ORR1C2 LTR MaLR 151 384 0 3 807 182 227 43 43 chr6 29188322 29188391 -120328646 + MIRc SINE MIR 30 98 -170 3 807 1022 144 66 11 chr6 29188447 29188630 -120328407 - B2_Mm2 SINE B2 0 195 3 3 807 512 263 15 29 chr6 29188693 29188830 -120328207 + RSINE1 SINE B4 12 146 -19 3 807 258 353 0 0 chr6 29188906 29188991 -120328046 + ID_B1 SINE B4 72 156 -68 3 807 676 203 30 30 chr6 29188994 29189126 -120327911 + RSINE1 SINE B4 5 136 -29 3 807 21 0 0 0 chr6 29189150 29189171 -120327866 + AT_rich Low_complexity Low_complexity 1 21 0 3 807 186 67 21 43 chr6 29189881 29189928 -120327109 + (TTTTTG)n Simple_repeat Simple_repeat 4 49 0 3 807 663 282 0 0 chr6 29190126 29190289 -120326748 + RSINE1 SINE B4 3 165 0 3 807 22 0 0 0 chr6 29190290 29190312 -120326725 + AT_rich Low_complexity Low_complexity 1 22 0 3 807 1355 83 39 0 chr6 29190326 29190506 -120326531 + B2_Mm2 SINE B2 1 187 -8 3 807 780 240 86 0 chr6 29190519 29190694 -120326343 + B3 SINE B2 27 216 0 3 807 380 200 0 11 chr6 29190780 29190871 -120326166 + GA-rich Low_complexity Low_complexity 2 91 0 3 807 896 93 8 15 chr6 29191225 29191356 -120325681 + B2_Mm2 SINE B2 1 130 -65 3 807 1169 233 86 4 chr6 29191438 29191705 -120325332 + Lx8 LINE L1 6189 6477 -996 3 807 330 115 0 0 chr6 29191719 29191771 -120325266 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 3 807 508 302 145 43 chr6 29191859 29192094 -120324943 + MER119 DNA MER1_type 124 382 -201 3 807 440 244 0 98 chr6 29192095 29192227 -120324810 + PB1D9 SINE Alu 2 120 0 3 807 22 0 0 0 chr6 29192238 29192260 -120324777 + AT_rich Low_complexity Low_complexity 1 22 0 4 807 322 235 14 42 chr6 29192262 29192333 -120324704 + RSINE1 SINE B4 2 70 -95 4 807 40 31 0 15 chr6 29192346 29192364 -120324673 + AT_rich Low_complexity Low_complexity 1 18 0 4 807 1305 91 23 0 chr6 29192364 29192540 -120324497 + B2_Mm2 SINE B2 2 181 -14 4 807 40 31 0 15 chr6 29192540 29192586 -120324451 + AT_rich Low_complexity Low_complexity 1 46 0 4 807 353 288 0 0 chr6 29192926 29193006 -120324031 + PB1D10 SINE Alu 35 114 -3 4 807 312 227 43 43 chr6 29193068 29193160 -120323877 + MT2B LTR ERVL 166 257 -344 4 807 581 126 40 40 chr6 29193090 29193189 -120323848 + B1_Mus1 SINE Alu 38 136 -12 4 807 276 246 14 14 chr6 29193479 29193549 -120323488 + RMER17C LTR ERVK 174 243 -715 4 807 992 144 70 60 chr6 29193540 29193755 -120323282 + RMER17C LTR ERVK 194 410 0 4 807 283 149 78 39 chr6 29193797 29193874 -120323163 - B4 SINE B4 -203 89 10 4 807 253 304 0 0 chr6 29193931 29194000 -120323037 - ID4 SINE ID -13 70 2 4 807 339 282 188 10 chr6 29194091 29194295 -120322742 - L2c LINE L2 -3 3384 3125 4 807 476 263 9 9 chr6 29194328 29194443 -120322594 + PB1D7 SINE Alu 5 119 -1 4 807 479 289 62 0 chr6 29194454 29194582 -120322455 + RSINE1 SINE B4 4 139 -26 4 807 360 0 0 0 chr6 29194583 29194623 -120322414 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 807 843 166 54 24 chr6 29194698 29194865 -120322172 + B2_Mm2 SINE B2 23 194 -1 4 807 315 177 0 0 chr6 29195113 29195175 -120321862 + T-rich Low_complexity Low_complexity 1 62 0 4 807 286 257 14 41 chr6 29195184 29195257 -120321780 - PB1D10 SINE Alu -44 73 3 4 807 239 279 76 76 chr6 29195958 29196129 -120320908 + ORR1D2 LTR MaLR 143 313 -57 4 807 403 316 68 0 chr6 29196166 29196299 -120320738 + B1F2 SINE Alu 1 142 -7 4 807 308 229 0 35 chr6 29196307 29196393 -120320644 + PB1D9 SINE Alu 37 119 -1 4 807 322 333 32 32 chr6 29196405 29196563 -120320474 + RSINE1 SINE B4 8 165 0 4 807 799 232 0 18 chr6 29197784 29197951 -120319086 - B3 SINE B2 0 216 53 4 807 557 277 73 0 chr6 29197974 29198111 -120318926 - RSINE1 SINE B4 -11 154 8 4 807 477 90 0 0 chr6 29198161 29198228 -120318809 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 807 316 247 153 0 chr6 29198255 29198340 -120318697 - RSINE1 SINE B4 -64 101 4 4 807 564 222 8 8 chr6 29198349 29198467 -120318570 - PB1D7 SINE Alu -2 118 1 4 807 447 317 0 0 chr6 29198747 29198867 -120318170 - PB1D7 SINE Alu 0 120 1 4 807 387 303 6 90 chr6 29198919 29199075 -120317962 - B1F SINE Alu -6 143 1 4 807 212 356 0 0 chr6 29199025 29199084 -120317953 - B4 SINE B4 -157 135 77 4 807 999 71 25 13 chr6 29199215 29199372 -120317665 + (TTTC)n Simple_repeat Simple_repeat 4 162 0 4 807 261 132 0 0 chr6 29199372 29199410 -120317627 + (TCCC)n Simple_repeat Simple_repeat 2 39 0 4 807 662 136 8 0 chr6 29199410 29199528 -120317509 + (TTTC)n Simple_repeat Simple_repeat 3 121 0 4 807 742 228 161 0 chr6 29199544 29199706 -120317331 - B3 SINE B2 -8 208 21 4 807 23 54 0 0 chr6 29199782 29199819 -120317218 + AT_rich Low_complexity Low_complexity 1 37 0 4 807 386 73 23 47 chr6 29200082 29200168 -120316869 + (TCCC)n Simple_repeat Simple_repeat 3 86 0 4 807 532 266 0 0 chr6 29200204 29200313 -120316724 - RSINE1 SINE B4 -17 148 40 4 807 1305 91 0 0 chr6 29200566 29200877 -120316160 + (CA)n Simple_repeat Simple_repeat 1 311 0 4 807 251 257 60 108 chr6 29200909 29200992 -120316045 + ID4_ SINE ID 3 81 -2 4 807 1258 41 7 0 chr6 29201104 29201251 -120315786 - B1_Mus1 SINE Alu 0 148 1 4 807 405 259 17 47 chr6 29201750 29201900 -120315137 + B3 SINE B2 4 216 0 4 807 263 349 58 0 chr6 29202686 29202772 -120314265 + B1F2 SINE Alu 46 136 -13 4 807 432 240 185 45 chr6 29202784 29202941 -120314096 + B3A SINE B2 1 179 -19 4 807 655 215 13 46 chr6 29203001 29203152 -120313885 + B1_Mur2 SINE Alu 3 148 -1 4 807 1083 161 104 0 chr6 29203172 29203364 -120313673 + B3 SINE B2 2 213 -3 4 807 313 309 0 0 chr6 29203391 29203475 -120313562 + L1M4 LINE L1 5558 5641 -543 4 807 895 266 14 0 chr6 29203615 29203822 -120313215 + B3 SINE B2 1 210 -6 4 807 2047 84 25 9 chr6 29203845 29204137 -120312900 - ORR1A2 LTR MaLR -14 356 52 4 807 255 200 197 15 chr6 29204138 29204204 -120312833 + B1F SINE Alu 27 104 -45 4 807 1236 202 8 145 chr6 29204280 29204645 -120312392 - MTD LTR MaLR -99 320 6 4 807 500 282 59 5 chr6 29204744 29204932 -120312105 + B3 SINE B2 9 216 0 4 807 313 261 76 0 chr6 29205246 29205338 -120311699 - L1M4 LINE L1 -558 5626 5528 4 807 384 287 51 81 chr6 29205471 29205505 -120311532 - B2_Mm1a SINE B2 0 193 158 4 807 1315 77 22 16 chr6 29205505 29205689 -120311348 + B2_Mm2 SINE B2 2 186 -9 4 807 384 287 51 81 chr6 29205689 29205707 -120311330 - B2_Mm1a SINE B2 -36 157 141 4 807 261 0 0 0 chr6 29205707 29205736 -120311301 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 807 252 0 0 0 chr6 29205736 29205763 -120311274 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 807 641 242 65 3 chr6 29205763 29205905 -120311132 - B3A SINE B2 -50 148 3 4 807 550 296 0 27 chr6 29206015 29206164 -120310873 + ID_B1 SINE B4 80 224 0 4 807 230 175 0 0 chr6 29206338 29206378 -120310659 + ID4_ SINE ID 1 40 -43 4 807 270 0 0 0 chr6 29206405 29206435 -120310602 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 807 325 309 65 0 chr6 29206768 29206891 -120310146 - ID_B1 SINE B4 -16 208 78 4 807 872 240 33 9 chr6 29206931 29207141 -120309896 + B3 SINE B2 2 216 0 4 807 508 256 68 0 chr6 29207293 29207426 -120309611 + B1F2 SINE Alu 1 142 -7 4 807 215 325 38 0 chr6 29207493 29207573 -120309464 - MIRc SINE MIR -137 131 49 4 807 1030 229 23 19 chr6 29207894 29208086 -120308951 + B3 SINE B2 1 194 -22 4 807 474 101 0 0 chr6 29208086 29208155 -120308882 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 807 1030 229 23 19 chr6 29208155 29208176 -120308861 + B3 SINE B2 195 215 -1 4 807 282 329 0 0 chr6 29208617 29208693 -120308344 - ID_B1 SINE B4 -55 169 94 4 807 313 294 0 0 chr6 29208625 29208693 -120308344 - PB1D10 SINE Alu -37 80 13 4 807 250 275 22 121 chr6 29208693 29208716 -120308321 - MT2B LTR ERVL -363 238 157 4 807 597 241 76 0 chr6 29208822 29208967 -120308070 + ID_B1 SINE B4 49 204 -20 4 807 252 327 83 45 chr6 29210247 29210404 -120306633 - RLTR25B LTR ERVK 0 1028 866 4 807 213 39 0 0 chr6 29210404 29210430 -120306607 + (TCC)n Simple_repeat Simple_repeat 3 28 0 4 807 510 17 0 0 chr6 29210430 29210489 -120306548 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 807 203 0 0 36 chr6 29210615 29210643 -120306394 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 807 435 68 0 0 chr6 29210720 29210779 -120306258 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 807 240 309 59 0 chr6 29212313 29212381 -120304656 - ID4_ SINE ID -10 73 2 4 807 372 139 41 194 chr6 29212696 29212794 -120304243 - B1F SINE Alu 0 149 67 4 807 420 264 76 7 chr6 29212927 29213072 -120303965 + L1MB7 LINE L1 5963 6117 -67 4 807 724 185 13 64 chr6 29213072 29213228 -120303809 + B1_Mus1 SINE Alu 1 148 0 4 807 217 45 0 143 chr6 29213230 29213307 -120303730 + A-rich Low_complexity Low_complexity 1 66 0 4 807 1373 108 0 10 chr6 29213335 29213532 -120303505 - B2_Mm2 SINE B2 0 195 1 4 807 317 125 18 0 chr6 29213567 29213623 -120303414 + (TCC)n Simple_repeat Simple_repeat 1 57 0 4 807 313 139 49 111 chr6 29214008 29214089 -120302948 - BC1_Mm scRNA scRNA -75 77 2 4 807 422 228 128 20 chr6 29214111 29214259 -120302778 - RSINE1 SINE B4 0 165 2 4 807 324 0 0 0 chr6 29214469 29214505 -120302532 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 807 705 293 89 105 chr6 29215035 29215359 -120301678 + MER2 DNA MER2_type 25 343 -2 4 807 368 246 172 16 chr6 29215444 29215572 -120301465 + B1F SINE Alu 1 148 -1 4 807 552 285 35 0 chr6 29215572 29215706 -120301331 + ID_B1 SINE B4 75 213 -11 4 807 273 292 94 0 chr6 29215789 29215885 -120301152 - PB1D7 SINE Alu -15 105 1 4 807 639 250 21 33 chr6 29215972 29216128 -120300909 + ID_B1 SINE B4 85 225 -67 4 807 659 214 191 0 chr6 29216128 29216301 -120300736 + B3 SINE B2 5 210 -6 4 807 361 258 46 160 chr6 29216301 29216338 -120300699 + B4A SINE B4 226 256 -36 4 807 671 210 65 0 chr6 29216340 29216478 -120300559 + B1_Mur1 SINE Alu 2 148 -1 4 807 266 288 26 52 chr6 29216597 29216674 -120300363 - PB1D7 SINE Alu -26 94 20 4 807 601 269 35 0 chr6 29216717 29216858 -120300179 - RSINE1 SINE B4 -2 163 18 4 807 324 167 14 101 chr6 29217309 29217392 -120299645 + ID4_ SINE ID 18 98 -54 4 807 553 234 86 14 chr6 29217523 29217662 -120299375 + B1F SINE Alu 1 149 0 4 807 289 320 164 71 chr6 29217675 29217944 -120299093 - L2a LINE L2 0 3426 3133 4 807 420 215 226 24 chr6 29218434 29218558 -120298479 - B1_Mur2 SINE Alu 0 149 1 4 807 814 232 263 23 chr6 29218743 29219043 -120297994 - MTEb LTR MaLR 0 379 8 4 807 356 315 64 9 chr6 29219081 29219190 -120297847 - ID_B1 SINE B4 -29 195 81 4 807 311 329 133 75 chr6 29219222 29219462 -120297575 - L1MEe LINE L1 -4341 513 260 4 807 582 260 103 7 chr6 29219709 29219864 -120297173 - ID_B1 SINE B4 -53 171 2 5 807 477 159 53 61 chr6 29219864 29219978 -120297059 - L1MB7 LINE L1 -43 6141 6029 5 807 263 253 137 69 chr6 29219984 29220086 -120296951 + PB1D9 SINE Alu 5 113 -7 5 807 393 173 253 0 chr6 29220282 29220357 -120296680 - B3 SINE B2 -121 95 2 5 807 280 196 0 27 chr6 29220357 29220434 -120296603 - L1MB7 LINE L1 -290 5888 5816 5 807 564 172 10 10 chr6 29220435 29220535 -120296502 - B1_Mus2 SINE Alu 0 147 48 5 807 506 235 17 34 chr6 29220538 29220657 -120296380 - ID_B1 SINE B4 -8 216 100 5 807 733 73 18 0 chr6 29221700 29221809 -120295228 + (GA)n Simple_repeat Simple_repeat 2 112 0 5 807 1375 39 6 6 chr6 29221829 29222008 -120295029 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 5 807 1011 17 0 0 chr6 29222009 29222126 -120294911 + (GAGAA)n Simple_repeat Simple_repeat 1 117 0 5 807 1703 16 5 0 chr6 29222127 29222318 -120294719 + B2_Mm1t SINE B2 2 193 0 5 807 262 313 0 88 chr6 29223175 29223266 -120293771 - ID4_ SINE ID 0 83 1 5 807 453 269 36 22 chr6 29223266 29223403 -120293634 - B1F SINE Alu 0 149 11 5 807 689 151 33 8 chr6 29223497 29223617 -120293420 + B1_Mur3 SINE Alu 15 137 -12 5 807 1160 74 0 0 chr6 29223776 29223924 -120293113 - B1_Mus1 SINE Alu 0 148 1 5 807 287 224 30 0 chr6 29223929 29223996 -120293041 - B1F SINE Alu 0 149 81 5 807 715 205 113 34 chr6 29224076 29224253 -120292784 - B3 SINE B2 -24 192 2 5 807 316 240 180 12 chr6 29224361 29224484 -120292553 + B1F SINE Alu 1 139 -8 5 807 965 149 0 69 chr6 29225505 29225532 -120291505 - B2_Mm2 SINE B2 -34 161 139 5 807 701 180 55 41 chr6 29225532 29225677 -120291360 - B1_Mur2 SINE Alu -1 148 2 5 807 965 149 0 69 chr6 29225677 29225694 -120291343 - B2_Mm2 SINE B2 -57 138 126 5 807 189 0 0 0 chr6 29225694 29225715 -120291322 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 5 807 965 149 0 69 chr6 29225715 29225842 -120291195 - B2_Mm2 SINE B2 -70 125 1 5 807 309 250 65 54 chr6 29225843 29225936 -120291101 - PB1D10 SINE Alu -3 114 21 5 807 222 373 30 0 chr6 29226212 29226279 -120290758 - ID SINE ID -152 72 4 5 807 520 223 92 37 chr6 29226334 29226497 -120290540 + MER2 DNA MER2_type 109 280 -65 5 807 232 328 15 15 chr6 29226727 29226792 -120290245 - PB1D10 SINE Alu -30 87 23 5 807 343 246 160 42 chr6 29226867 29226986 -120290051 - B1_Mur2 SINE Alu -8 141 9 5 807 258 232 54 0 chr6 29227300 29227356 -120289681 - PB1D10 SINE Alu -2 115 57 5 807 525 288 26 46 chr6 29227486 29227639 -120289398 + RSINE1 SINE B4 16 165 0 5 807 622 284 8 0 chr6 29227694 29227828 -120289209 + RSINE1 SINE B4 3 137 -28 5 807 342 305 19 0 chr6 29227926 29228031 -120289006 - PB1D10 SINE Alu -10 107 1 5 807 254 373 83 48 chr6 29228254 29228482 -120288555 + MLT1J-int LTR MaLR 1121 1356 -31 5 807 413 216 56 11 chr6 29228562 29228651 -120288386 - PB1D7 SINE Alu -1 119 27 5 807 280 271 114 0 chr6 29228978 29229048 -120287989 - PB1D10 SINE Alu -25 92 15 5 808 597 94 0 0 chr6 29229276 29229361 -120287676 + (GGGA)n Simple_repeat Simple_repeat 4 88 0 5 808 342 277 146 42 chr6 29229482 29229742 -120287295 + B4 SINE B4 1 287 -5 5 808 951 112 118 7 chr6 29229767 29229921 -120287116 + B2_Mm2 SINE B2 11 180 -15 5 808 279 0 0 0 chr6 29229921 29229952 -120287085 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 808 505 225 145 135 chr6 29229952 29229997 -120287040 + B3 SINE B2 173 212 -4 5 808 343 301 104 8 chr6 29230092 29230226 -120286811 + RSINE1 SINE B4 2 148 -17 5 808 789 131 30 23 chr6 29230221 29230354 -120286683 + B1_Mur4 SINE Alu 17 150 0 5 808 332 266 27 18 chr6 29230472 29230583 -120286454 + PB1D9 SINE Alu 9 120 0 5 808 520 281 57 32 chr6 29230636 29230794 -120286243 - RSINE1 SINE B4 -2 163 2 5 808 839 179 27 14 chr6 29231555 29231702 -120285335 - B1_Mur1 SINE Alu 0 149 1 5 808 523 297 32 49 chr6 29231725 29231916 -120285121 - B3A SINE B2 0 198 27 5 808 4496 36 0 20 chr6 29231916 29232460 -120284577 + L1Md_F2 LINE L1 6049 6581 -1 5 808 240 59 0 0 chr6 29233570 29233604 -120283433 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 5 808 192 77 0 0 chr6 29233629 29233655 -120283382 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 808 324 0 0 0 chr6 29233682 29233718 -120283319 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 808 192 77 0 0 chr6 29233723 29233749 -120283288 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 808 360 0 0 0 chr6 29233776 29233816 -120283221 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 808 192 77 0 0 chr6 29233821 29233847 -120283190 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 808 429 20 0 0 chr6 29233874 29233924 -120283113 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 808 192 77 0 0 chr6 29233929 29233955 -120283082 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 808 360 0 0 0 chr6 29233982 29234022 -120283015 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 808 192 77 0 0 chr6 29234025 29234051 -120282986 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 808 256 292 191 0 chr6 29234051 29234140 -120282897 - B1_Mur4 SINE Alu -11 139 34 5 808 211 280 26 26 chr6 29234203 29234280 -120282757 - B4 SINE B4 -214 78 2 5 808 256 263 18 0 chr6 29234416 29234473 -120282564 + B3A SINE B2 50 107 -91 5 808 546 267 37 0 chr6 29234553 29234688 -120282349 + ID_B1 SINE B4 3 142 -82 5 808 596 37 37 0 chr6 29234688 29234769 -120282268 + (GAAAA)n Simple_repeat Simple_repeat 3 86 0 5 808 315 274 84 0 chr6 29234923 29235018 -120282019 - PB1D10 SINE Alu -1 119 17 5 808 984 46 0 0 chr6 29235037 29235167 -120281870 + (TG)n Simple_repeat Simple_repeat 2 131 0 5 808 572 286 41 161 chr6 29235167 29235474 -120281563 - B4A SINE B4 -16 276 7 5 808 260 316 34 34 chr6 29235479 29235597 -120281440 + MIRc SINE MIR 102 219 -49 5 808 410 159 180 11 chr6 29235636 29235725 -120281312 - PB1D10 SINE Alu 0 117 14 5 808 311 284 233 26 chr6 29236240 29236390 -120280647 + MER2 DNA MER2_type 7 187 -158 5 808 245 274 118 0 chr6 29236378 29236438 -120280599 + MER2 DNA MER2_type 229 293 -52 5 808 2426 68 55 0 chr6 29236438 29236748 -120280289 - ORR1A2 LTR MaLR 0 327 1 5 808 245 274 118 0 chr6 29236748 29236789 -120280248 + MER2 DNA MER2_type 294 341 -4 5 808 355 208 0 83 chr6 29236972 29237056 -120279981 - PB1D10 SINE Alu 0 117 41 5 808 529 276 15 0 chr6 29237222 29237356 -120279681 - B1F SINE Alu -2 147 12 5 808 381 337 28 40 chr6 29237356 29237398 -120279639 - ID_B1 SINE B4 -2 222 49 5 808 614 147 0 42 chr6 29238461 29238603 -120278434 + CT-rich Low_complexity Low_complexity 2 137 0 5 808 216 0 0 0 chr6 29238617 29238641 -120278396 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 5 808 287 260 51 13 chr6 29238655 29238733 -120278304 - PB1D10 SINE Alu -29 88 8 5 808 313 260 114 9 chr6 29238664 29238769 -120278268 - ID_B1 SINE B4 -64 160 45 5 808 265 247 39 13 chr6 29238820 29238898 -120278139 - PB1D7 SINE Alu 0 120 41 5 808 789 245 67 43 chr6 29238916 29239096 -120277941 + B3 SINE B2 1 194 -22 5 808 2044 119 31 0 chr6 29239096 29239415 -120277622 - ORR1A4 LTR MaLR 0 329 1 5 808 789 245 67 43 chr6 29239415 29239443 -120277594 + B3 SINE B2 195 214 -2 5 808 295 236 192 61 chr6 29239562 29239585 -120277452 - PB1D10 SINE Alu 0 117 6 5 808 384 227 13 13 chr6 29239585 29239661 -120277376 - ID_B1 SINE B4 -62 162 87 5 808 497 176 45 73 chr6 29239714 29239824 -120277213 - B1_Mur1 SINE Alu -1 148 42 5 808 252 200 0 68 chr6 29239912 29239971 -120277066 - PB1D9 SINE Alu -61 59 5 5 808 213 289 0 0 chr6 29239971 29240016 -120277021 - B1_Mur3 SINE Alu -11 138 94 5 808 767 267 72 0 chr6 29240074 29240254 -120276783 - B3 SINE B2 -22 194 2 5 808 257 123 45 15 chr6 29240812 29240878 -120276159 + GA-rich Low_complexity Low_complexity 3 70 0 5 808 2275 57 0 0 chr6 29240892 29241175 -120275862 + L1Md_F2 LINE L1 5694 5976 -606 5 808 234 225 247 0 chr6 29241643 29241732 -120275305 - LTR16A1 LTR ERVL -186 270 160 5 808 1126 182 156 43 chr6 29241883 29242224 -120274813 + MTD LTR MaLR 1 386 -14 5 808 455 243 18 26 chr6 29242429 29242543 -120274494 - PB1D7 SINE Alu -7 113 1 5 808 448 193 156 54 chr6 29242669 29242853 -120274184 - MIRb SINE MIR -29 233 31 5 808 349 275 41 62 chr6 29242871 29242968 -120274069 - B1_Mur4 SINE Alu -1 149 55 5 808 236 106 29 57 chr6 29244246 29244316 -120272721 + T-rich Low_complexity Low_complexity 4 71 0 5 808 523 238 96 37 chr6 29244324 29244459 -120272578 - B1_Mur1 SINE Alu -5 144 2 5 808 381 261 0 32 chr6 29244471 29244566 -120272471 - PB1D7 SINE Alu 0 120 29 5 808 271 274 16 0 chr6 29244972 29245034 -120272003 - B4A SINE B4 -13 279 217 5 808 530 276 13 38 chr6 29245072 29245230 -120271807 - RSINE1 SINE B4 -9 156 3 5 808 612 280 33 123 chr6 29245279 29245523 -120271514 - B4A SINE B4 -68 224 3 5 808 387 318 105 39 chr6 29245523 29245799 -120271238 + ORR1E LTR MaLR 65 359 0 5 808 637 259 101 25 chr6 29245982 29246180 -120270857 - ID_B1 SINE B4 -8 216 4 5 808 2133 155 73 3 chr6 29246282 29246650 -120270387 + ORR1B1 LTR MaLR 1 394 0 5 808 754 179 156 0 chr6 29246656 29246835 -120270202 + B3 SINE B2 5 211 -5 5 808 1132 213 0 13 chr6 29247091 29247319 -120269718 - URR1B DNA MER1_type 0 225 1 5 808 458 101 0 33 chr6 29247383 29247423 -120269614 + (T)n Simple_repeat Simple_repeat 1 40 0 5 808 1248 48 0 0 chr6 29247423 29247570 -120269467 - B1_Mm SINE Alu 0 147 1 5 808 458 101 0 33 chr6 29247570 29247621 -120269416 + (T)n Simple_repeat Simple_repeat 1 49 0 6 808 272 214 71 0 chr6 29247627 29247683 -120269354 - PB1D10 SINE Alu -4 113 54 6 808 234 0 0 0 chr6 29248270 29248296 -120268741 + (A)n Simple_repeat Simple_repeat 1 26 0 6 808 207 200 0 0 chr6 29248426 29248471 -120268566 + T-rich Low_complexity Low_complexity 1 45 0 6 808 189 0 0 0 chr6 29248512 29248533 -120268504 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 6 808 3872 148 65 12 chr6 29248960 29249306 -120267731 + RMER6D LTR ERVK 3 349 -371 6 808 413 66 0 16 chr6 29249306 29249368 -120267669 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 808 3872 148 65 12 chr6 29249368 29249702 -120267335 + RMER6D LTR ERVK 350 718 -2 6 808 377 253 0 0 chr6 29249754 29249837 -120267200 + ID4 SINE ID 1 83 0 6 808 1279 28 0 0 chr6 29250063 29250208 -120266829 - B1_Mus2 SINE Alu -2 145 1 6 808 766 184 63 7 chr6 29251830 29251972 -120265065 + RSINE1 SINE B4 3 152 -13 6 808 645 223 16 0 chr6 29252534 29252655 -120264382 - B1_Mur1 SINE Alu -18 131 9 6 808 432 67 0 0 chr6 29252658 29252718 -120264319 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 808 482 293 17 0 chr6 29252729 29252823 -120264214 - RSINE1 SINE B4 -24 141 46 6 808 3099 50 8 2 chr6 29252823 29253220 -120263817 - MTB LTR MaLR 0 400 2 6 808 2552 134 63 2 chr6 29253970 29254367 -120262670 + MTC LTR MaLR 1 421 0 6 808 711 240 86 25 chr6 29254453 29254650 -120262387 - ID_B1 SINE B4 -15 209 1 6 808 825 226 55 5 chr6 29255586 29255786 -120261251 - B3 SINE B2 -5 211 2 6 808 305 216 18 126 chr6 29256063 29256174 -120260863 - B1_Mus2 SINE Alu -43 104 6 6 808 371 203 27 24 chr6 29256097 29256195 -120260842 - B4A SINE B4 -61 163 77 6 808 393 274 39 0 chr6 29256220 29256322 -120260715 - MTEa LTR MaLR 0 379 274 6 808 339 293 10 20 chr6 29256330 29256431 -120260606 + L1M5 LINE L1 2585 2684 -3462 6 808 312 27 0 0 chr6 29256486 29256523 -120260514 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 808 525 307 7 7 chr6 29256541 29256682 -120260355 - RSINE1 SINE B4 -21 144 4 6 808 1495 221 23 31 chr6 29256804 29257154 -120259883 + ORR1E LTR MaLR 7 353 -6 6 808 471 326 83 0 chr6 29257161 29257293 -120259744 + RSINE1 SINE B4 21 163 -2 6 808 668 217 190 0 chr6 29257420 29257646 -120259391 + L1MC4a LINE L1 6247 6515 -1367 6 808 357 248 134 8 chr6 29257702 29257836 -120259201 - L1MD2 LINE L1 -515 5844 5694 6 808 1978 145 30 0 chr6 29257869 29258173 -120258864 - RMER19B LTR ERVK -14 888 576 6 808 3169 159 30 70 chr6 29258180 29259298 -120257739 + RLTR13C1 LTR ERVK 1 1033 0 6 808 2361 146 138 102 chr6 29259299 29259848 -120257189 - RMER19B LTR ERVK -333 569 1 6 808 472 299 135 102 chr6 29259982 29260446 -120256591 - L1MC4 LINE L1 -530 7512 7013 6 808 1361 67 5 27 chr6 29260446 29260631 -120256406 - B2_Mm2 SINE B2 -14 181 1 6 808 472 248 13 69 chr6 29260631 29260748 -120256289 - L1MC4 LINE L1 -1030 7012 6890 6 808 361 263 0 40 chr6 29260759 29260858 -120256179 - B1F2 SINE Alu 0 149 55 6 808 261 273 41 0 chr6 29260868 29260978 -120256059 - L1MC4 LINE L1 -1142 6900 6717 6 808 409 318 5 116 chr6 29261021 29261189 -120255848 + ID_B1 SINE B4 20 168 -56 6 808 1188 266 87 20 chr6 29261189 29261535 -120255502 - ORR1D2 LTR MaLR -1 369 1 6 808 409 318 5 116 chr6 29261535 29261590 -120255447 + ID_B1 SINE B4 169 218 -6 6 808 800 156 8 0 chr6 29261832 29261960 -120255077 + B3 SINE B2 2 130 -86 6 808 327 25 0 0 chr6 29261974 29262014 -120255023 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 6 808 495 250 70 37 chr6 29262280 29262447 -120254590 + B3A SINE B2 40 209 -7 6 808 449 244 43 17 chr6 29262471 29262588 -120254449 + PB1D9 SINE Alu 1 120 0 6 808 446 275 36 90 chr6 29262669 29262854 -120254183 + MLT1J1 LTR MaLR 38 236 -276 6 808 189 0 0 0 chr6 29262854 29262875 -120254162 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 808 370 339 103 58 chr6 29262875 29262980 -120254057 + MLT1J1 LTR MaLR 237 341 -171 6 808 26 30 0 0 chr6 29263104 29263137 -120253900 + AT_rich Low_complexity Low_complexity 1 33 0 6 808 848 117 80 0 chr6 29263142 29263279 -120253758 - B1_Mus1 SINE Alu 0 148 1 6 808 455 300 67 57 chr6 29263382 29263665 -120253372 - L1M6 LINE L1 -4741 1755 1470 6 808 288 57 0 0 chr6 29263912 29263947 -120253090 + tRNA-Lys-AAG tRNA tRNA 1 35 -41 6 808 1007 174 231 7 chr6 29263941 29264248 -120252789 + RMER17B LTR ERVK 583 958 0 6 808 22 35 0 0 chr6 29264418 29264447 -120252590 + AT_rich Low_complexity Low_complexity 1 29 0 6 808 396 234 67 67 chr6 29264833 29264952 -120252085 + ID_B1 SINE B4 103 221 -3 6 808 227 326 28 62 chr6 29264952 29264972 -120252065 - YREP_Mm Unknown Unknown -1505 302 169 6 808 346 250 56 0 chr6 29265078 29265150 -120251887 + ID4 SINE ID 2 77 -6 6 808 240 268 0 0 chr6 29265150 29265232 -120251805 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 808 604 207 44 15 chr6 29265407 29265544 -120251493 + B1F SINE Alu 1 141 -8 6 808 371 266 79 0 chr6 29265708 29265847 -120251190 - L1MB3 LINE L1 -40 6143 5994 6 808 892 171 0 20 chr6 29265872 29266021 -120251016 + B1_Mur2 SINE Alu 2 147 -2 6 808 273 75 0 0 chr6 29266038 29266078 -120250959 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 6 808 266 240 222 37 chr6 29266501 29266609 -120250428 + RSINE1 SINE B4 3 130 -35 6 808 216 291 167 25 chr6 29266609 29266663 -120250374 + B2_Mm2 SINE B2 2 186 -9 6 808 472 304 91 38 chr6 29266742 29266951 -120250086 - MLT1J LTR MaLR -264 248 29 6 808 846 162 0 47 chr6 29267006 29267155 -120249882 - B1_Mur4 SINE Alu -7 143 2 6 808 433 252 236 32 chr6 29268316 29268439 -120248598 + RSINE1 SINE B4 8 155 -10 6 808 306 0 0 0 chr6 29268444 29268478 -120248559 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 808 289 257 68 0 chr6 29268584 29268658 -120248379 + ID4_ SINE ID 3 81 -2 6 808 438 19 0 0 chr6 29268658 29268666 -120248371 + (CA)n Simple_repeat Simple_repeat 1 8 0 6 808 482 46 15 0 chr6 29268666 29268731 -120248306 + (CCA)n Simple_repeat Simple_repeat 3 68 0 6 808 438 19 0 0 chr6 29268731 29268775 -120248262 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 808 699 12 0 0 chr6 29268775 29268855 -120248182 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 808 439 222 0 0 chr6 29270087 29270168 -120246869 + PB1D7 SINE Alu 27 107 -13 6 808 209 108 27 0 chr6 29270177 29270214 -120246823 + (TAA)n Simple_repeat Simple_repeat 3 40 0 6 808 512 248 67 15 chr6 29270291 29270425 -120246612 + MER20 DNA MER1_type 33 173 -46 6 808 439 184 116 27 chr6 29270425 29270543 -120246494 + B1_Mur1 SINE Alu 1 129 -21 6 808 534 300 0 21 chr6 29270954 29271097 -120245940 - ID_B1 SINE B4 -3 221 82 6 808 632 254 74 42 chr6 29271135 29271217 -120245820 + B4 SINE B4 1 88 -204 6 808 288 342 25 25 chr6 29271217 29271337 -120245700 + B1_Mus2 SINE Alu 1 120 -27 6 808 513 288 46 64 chr6 29271366 29271585 -120245452 + B4A SINE B4 4 218 -74 6 808 27 0 0 0 chr6 29271661 29271688 -120245349 + AT_rich Low_complexity Low_complexity 1 27 0 6 808 702 243 112 0 chr6 29271695 29271864 -120245173 - B3 SINE B2 -2 214 27 6 808 494 284 201 0 chr6 29271904 29272073 -120244964 + B3 SINE B2 1 203 -13 6 808 819 175 29 0 chr6 29272106 29272243 -120244794 + B1_Mur2 SINE Alu 1 141 -8 6 808 1484 231 24 82 chr6 29272754 29273131 -120243906 - ORR1E LTR MaLR -2 357 3 6 808 252 352 48 8 chr6 29273484 29273610 -120243427 + MER5A DNA MER1_type 58 188 -1 6 808 612 277 0 28 chr6 29274224 29274365 -120242672 - ID_B1 SINE B4 -1 223 87 6 808 316 226 57 127 chr6 29274227 29274384 -120242653 + YREP_Mm Unknown Unknown 180 325 -1487 6 808 324 0 0 0 chr6 29274388 29274424 -120242613 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 808 767 277 18 46 chr6 29274450 29274730 -120242307 - B4A SINE B4 -18 274 3 6 808 241 274 174 31 chr6 29274821 29274919 -120242118 - PB1D10 SINE Alu -2 115 4 6 808 810 161 0 0 chr6 29274919 29275147 -120241890 + (TG)n Simple_repeat Simple_repeat 1 228 0 6 808 305 324 59 65 chr6 29275153 29275400 -120241637 - B4 SINE B4 -18 274 66 6 808 326 304 45 0 chr6 29275479 29275591 -120241446 - PB1D10 SINE Alu 0 117 1 6 808 500 252 70 89 chr6 29276026 29276183 -120240854 + B4A SINE B4 139 292 0 6 808 232 259 81 115 chr6 29277266 29277293 -120239744 + MT2B LTR ERVL 137 158 -443 6 808 538 294 16 0 chr6 29277293 29277419 -120239618 + B1F SINE Alu 1 128 -21 6 808 693 217 14 28 chr6 29277490 29277632 -120239405 - ID_B1 SINE B4 -3 221 82 6 808 217 367 0 98 chr6 29278174 29278307 -120238730 - PB1D7 SINE Alu 0 120 1 6 808 322 275 159 21 chr6 29278307 29278349 -120238688 - ID_B1 SINE B4 -129 95 34 6 808 287 229 29 0 chr6 29278313 29278383 -120238654 - PB1D10 SINE Alu 0 117 46 6 808 1132 277 67 42 chr6 29278425 29278786 -120238251 - ORR1D2 LTR MaLR 0 370 1 6 808 421 209 39 0 chr6 29278901 29279006 -120238031 + B1F1 SINE Alu 1 117 -3 6 808 1285 98 38 0 chr6 29279888 29280071 -120236966 - B2_Mm2 SINE B2 -5 190 1 6 808 1658 31 0 0 chr6 29280115 29280307 -120236730 + B2_Mm1a SINE B2 2 193 0 6 808 755 197 84 11 chr6 29280357 29280547 -120236490 + ID_B1 SINE B4 15 218 -6 6 808 1053 208 25 0 chr6 29281790 29281992 -120235045 + B3 SINE B2 2 208 -8 6 808 1098 58 29 0 chr6 29282185 29282323 -120234714 - B1_Mus2 SINE Alu -5 142 1 7 808 420 302 0 16 chr6 29282575 29282696 -120234341 + B1F SINE Alu 14 132 -17 7 808 260 339 0 66 chr6 29282696 29282711 -120234326 + ID_B1 SINE B4 95 221 -3 7 808 531 232 27 74 chr6 29282902 29282974 -120234063 + B4 SINE B4 3 78 -214 7 808 502 247 84 73 chr6 29282974 29283153 -120233884 + B3A SINE B2 2 182 -16 7 808 531 269 19 47 chr6 29283153 29283282 -120233755 + B4 SINE B4 79 193 -31 7 808 414 0 0 0 chr6 29283315 29283361 -120233676 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 808 416 313 0 7 chr6 29283719 29283854 -120233183 + MIR SINE MIR 14 147 -115 7 808 21 89 0 0 chr6 29284731 29284787 -120232250 + AT_rich Low_complexity Low_complexity 1 56 0 7 808 404 294 155 4 chr6 29285168 29285400 -120231637 + MER44A DNA MER2_type 18 284 -55 7 808 565 250 19 0 chr6 29286158 29286300 -120230737 - ID_B1 SINE B4 -143 149 1 7 808 303 274 53 68 chr6 29286567 29286700 -120230337 + L2a LINE L2 3286 3416 -10 7 808 353 227 0 0 chr6 29287058 29287124 -120229913 - ID4_ SINE ID -6 77 12 7 808 296 143 18 0 chr6 29287203 29287259 -120229778 + CT-rich Low_complexity Low_complexity 1 57 0 7 808 472 278 114 34 chr6 29287270 29287419 -120229618 - RSINE1 SINE B4 -2 163 3 7 808 675 268 101 5 chr6 29287499 29287698 -120229339 - ID_B1 SINE B4 0 224 7 7 808 546 167 43 9 chr6 29287868 29287983 -120229054 - RMER15 LTR ERVL -43 532 414 7 808 2273 103 25 0 chr6 29288063 29288382 -120228655 - ORR1A2 LTR MaLR 0 327 1 7 808 556 232 85 151 chr6 29288989 29289294 -120227743 + RMER5 LTR ERV1 14 298 -236 7 808 1083 224 165 14 chr6 29289841 29290199 -120226838 - MTD LTR MaLR 0 419 8 7 808 8899 14 0 2 chr6 29290241 29291221 -120225816 + RLTR13A3 LTR ERVK 1 978 0 7 808 4092 54 8 4 chr6 29291320 29291821 -120225216 - RLTR1C LTR ERV1 0 503 1 7 808 21 36 0 0 chr6 29292038 29292066 -120224971 + AT_rich Low_complexity Low_complexity 1 28 0 7 808 1287 97 11 0 chr6 29292349 29292524 -120224513 + B2_Mm1t SINE B2 3 179 -14 7 808 399 138 4 50 chr6 29292524 29292611 -120224426 + B2_Mm2 SINE B2 15 102 -91 7 808 33 73 0 0 chr6 29292631 29292699 -120224338 + AT_rich Low_complexity Low_complexity 1 68 0 7 808 527 258 132 15 chr6 29292810 29293015 -120224022 + Lx9 LINE L1 7214 7442 -202 7 808 834 328 33 28 chr6 29293091 29293253 -120223784 + Lx8 LINE L1 6789 6943 -530 7 808 243 0 0 0 chr6 29293253 29293280 -120223757 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 808 834 313 293 25 chr6 29293280 29293664 -120223373 + Lx8 LINE L1 6944 7438 -35 7 808 3328 46 2 2 chr6 29293760 29294156 -120222881 - MTA_Mm LTR MaLR 0 396 1 7 808 267 155 49 49 chr6 29294717 29294778 -120222259 + B3A SINE B2 2 62 -136 7 808 25 51 0 0 chr6 29295010 29295049 -120221988 + AT_rich Low_complexity Low_complexity 1 39 0 7 808 378 0 0 0 chr6 29295715 29295757 -120221280 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 808 1134 243 106 85 chr6 29296093 29296575 -120220462 + RMER5 LTR ERV1 40 531 -3 7 808 1642 37 5 0 chr6 29296736 29296926 -120220111 + B2_Mm1a SINE B2 3 193 0 7 808 183 42 0 0 chr6 29297075 29297099 -120219938 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 808 658 57 0 0 chr6 29299646 29299734 -120217303 + B1_Mus2 SINE Alu 60 147 0 7 808 189 0 0 0 chr6 29299734 29299755 -120217282 + (A)n Simple_repeat Simple_repeat 1 21 0 7 808 1157 62 0 7 chr6 29299783 29299929 -120217108 + B1_Mus2 SINE Alu 3 147 0 7 808 688 194 20 46 chr6 29299992 29300143 -120216894 - B1_Mur1 SINE Alu -2 147 1 7 808 533 279 14 41 chr6 29300236 29300382 -120216655 - RSINE1 SINE B4 -22 143 2 7 808 1459 65 16 16 chr6 29300551 29300740 -120216297 - B2_Mm2 SINE B2 -5 190 2 7 808 375 306 32 0 chr6 29300797 29300921 -120216116 + B1F SINE Alu 5 132 -17 7 808 391 307 103 35 chr6 29300961 29301106 -120215931 + RSINE1 SINE B4 11 165 0 7 808 1061 88 0 57 chr6 29301171 29301328 -120215709 + B1_Mus1 SINE Alu 1 148 0 7 808 207 162 0 0 chr6 29301337 29301374 -120215663 + GA-rich Low_complexity Low_complexity 4 40 0 7 808 1021 213 24 0 chr6 29301727 29301938 -120215099 - B3 SINE B2 0 216 1 7 808 262 310 12 12 chr6 29302588 29302673 -120214364 - MER33 DNA MER1_type -234 90 6 7 808 457 290 7 30 chr6 29303166 29303301 -120213736 - B3 SINE B2 -61 155 24 7 808 180 0 0 0 chr6 29303326 29303346 -120213691 + (TTGG)n Simple_repeat Simple_repeat 3 22 0 7 808 219 213 13 26 chr6 29303367 29303427 -120213610 + T-rich Low_complexity Low_complexity 19 77 0 7 808 707 184 81 0 chr6 29303427 29303563 -120213474 - B1_Mur2 SINE Alu -1 148 2 7 808 219 213 13 26 chr6 29303563 29303579 -120213458 + T-rich Low_complexity Low_complexity 3 18 0 7 808 1433 86 16 0 chr6 29304002 29304189 -120212848 + B2_Mm2 SINE B2 2 191 -4 7 808 359 264 61 76 chr6 29304312 29304443 -120212594 - RSINE1 SINE B4 -14 151 23 7 808 1171 116 11 0 chr6 29304443 29304624 -120212413 + B2_Mm1t SINE B2 11 193 0 7 808 827 257 132 9 chr6 29304679 29305005 -120212032 - MLT1C LTR MaLR -56 411 46 7 808 766 191 222 0 chr6 29305126 29305288 -120211749 + B3 SINE B2 2 199 -17 7 808 907 137 13 46 chr6 29305451 29305604 -120211433 - B1_Mur3 SINE Alu 0 149 2 7 808 435 273 74 17 chr6 29306962 29307137 -120209900 + B3 SINE B2 31 215 -1 7 808 365 209 26 87 chr6 29307651 29307766 -120209271 + B3 SINE B2 94 201 -15 7 808 226 277 76 15 chr6 29308702 29308768 -120208269 + PB1D10 SINE Alu 31 100 -17 7 808 482 181 86 0 chr6 29309209 29309314 -120207723 - PB1D9 SINE Alu 0 120 7 7 808 275 309 33 132 chr6 29309314 29309451 -120207586 - ID_B1 SINE B4 0 224 7 7 808 918 195 100 0 chr6 29309457 29309647 -120207390 - B3 SINE B2 -6 210 2 7 808 313 282 0 0 chr6 29310447 29310518 -120206519 - ID4 SINE ID -4 79 9 7 808 288 0 0 0 chr6 29310730 29310762 -120206275 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 808 26 50 0 0 chr6 29311888 29311928 -120205109 + AT_rich Low_complexity Low_complexity 1 40 0 7 808 243 0 0 0 chr6 29311982 29312009 -120205028 + (TA)n Simple_repeat Simple_repeat 1 27 0 7 808 198 0 0 0 chr6 29313757 29313779 -120203258 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 808 775 162 7 53 chr6 29313820 29313970 -120203067 - B1_Mur1 SINE Alu 0 149 7 7 808 198 0 0 0 chr6 29313970 29313992 -120203045 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 7 808 1008 182 10 40 chr6 29314311 29314511 -120202526 - B3A SINE B2 0 198 5 7 808 384 77 0 0 chr6 29314906 29314958 -120202079 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 7 808 763 118 47 0 chr6 29314958 29315085 -120201952 - B1_Mus1 SINE Alu -8 140 8 7 808 1236 41 0 0 chr6 29315144 29315290 -120201747 - B1_Mm SINE Alu -1 146 1 7 808 273 242 108 21 chr6 29315302 29315395 -120201642 - MIRb SINE MIR -71 197 97 7 808 741 203 88 83 chr6 29315397 29315601 -120201436 + B3 SINE B2 5 209 -7 7 808 209 229 164 0 chr6 29315622 29315683 -120201354 - MIR SINE MIR -163 99 29 7 808 205 176 0 0 chr6 29316663 29316697 -120200340 + CT-rich Low_complexity Low_complexity 3 36 0 7 808 220 210 15 46 chr6 29316778 29316843 -120200194 - B4A SINE B4 -146 146 84 7 808 234 0 0 0 chr6 29317067 29317093 -120199944 + (T)n Simple_repeat Simple_repeat 1 26 0 7 808 1096 77 7 0 chr6 29317094 29317237 -120199800 - B1_Mus2 SINE Alu -3 144 1 7 808 498 249 20 123 chr6 29317331 29317494 -120199543 + B3A SINE B2 43 188 -28 7 808 506 236 56 0 chr6 29318003 29318147 -120198890 - L1M2 LINE L1 -855 5288 5137 7 808 320 272 200 0 chr6 29318221 29318346 -120198691 - L1_Mur3 LINE L1 -954 4926 4777 7 808 1403 74 6 0 chr6 29319385 29319561 -120197476 + B2_Mm2 SINE B2 1 177 -18 7 808 275 212 61 0 chr6 29319575 29319641 -120197396 + B1F SINE Alu 5 74 -75 7 808 533 175 172 16 chr6 29320020 29320142 -120196895 - B1_Mur2 SINE Alu -8 141 1 7 808 1234 113 49 0 chr6 29320372 29320557 -120196480 - B2_Mm2 SINE B2 -1 194 1 7 808 21 0 0 0 chr6 29320732 29320753 -120196284 + AT_rich Low_complexity Low_complexity 1 21 0 7 808 254 258 106 0 chr6 29320930 29320996 -120196041 + PB1D7 SINE Alu 40 112 -8 7 808 587 262 42 47 chr6 29321115 29321307 -120195730 + B3A SINE B2 8 198 0 7 808 268 296 59 7 chr6 29321372 29321508 -120195529 - Charlie2b DNA MER1_type -834 1948 1806 7 808 429 204 114 19 chr6 29321924 29322029 -120195008 - PB1D10 SINE Alu -2 115 1 7 808 1327 83 5 35 chr6 29322136 29322335 -120194702 - B2_Mm1a SINE B2 0 193 1 7 808 1208 41 7 0 chr6 29323045 29323192 -120193845 - B1_Mus1 SINE Alu 0 148 1 7 808 279 0 0 0 chr6 29323265 29323296 -120193741 + (ACTG)n Simple_repeat Simple_repeat 4 34 0 7 808 437 228 92 61 chr6 29323296 29323418 -120193619 - B1_Mur2 SINE Alu -21 128 2 7 808 591 15 0 0 chr6 29323993 29324061 -120192976 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 7 808 243 270 120 13 chr6 29324061 29324136 -120192901 - PB1D7 SINE Alu -12 108 26 7 808 304 228 63 0 chr6 29324115 29324194 -120192843 - B4 SINE B4 -207 85 2 7 808 339 25 0 0 chr6 29324215 29324255 -120192782 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 808 301 157 0 0 chr6 29326712 29326763 -120190274 + B1_Mur1 SINE Alu 99 149 0 8 808 861 179 214 0 chr6 29326764 29326937 -120190100 + B3 SINE B2 1 210 -6 8 808 401 267 20 46 chr6 29328167 29328185 -120188852 + ID_B1 SINE B4 76 224 0 8 808 552 209 52 7 chr6 29328185 29328320 -120188717 + B1_Mur2 SINE Alu 9 149 0 8 808 222 343 0 14 chr6 29328385 29328456 -120188581 + ID4_ SINE ID 11 80 -3 8 808 313 220 0 0 chr6 29329124 29329183 -120187854 - ID2 SINE ID -10 73 15 8 808 682 259 49 15 chr6 29331146 29331350 -120185687 - ORR1E LTR MaLR -148 211 1 8 808 897 254 10 5 chr6 29331366 29331568 -120185469 + B3 SINE B2 2 204 -12 8 808 2581 252 63 22 chr6 29331620 29332334 -120184703 + Lx8 LINE L1 6211 6953 -520 8 808 540 166 0 0 chr6 29332336 29332475 -120184562 + CT-rich Low_complexity Low_complexity 2 140 0 8 808 306 0 0 0 chr6 29332477 29332511 -120184526 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 808 708 185 146 0 chr6 29332534 29332685 -120184352 + Lx8 LINE L1 6968 7140 -333 8 808 218 289 0 62 chr6 29332801 29332882 -120184155 - B4A SINE B4 -214 78 3 8 808 348 111 0 0 chr6 29332978 29333041 -120183996 + (TC)n Simple_repeat Simple_repeat 1 63 0 8 808 477 0 0 0 chr6 29333041 29333094 -120183943 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 808 321 190 99 16 chr6 29333110 29333292 -120183745 + RMER17D2 LTR ERVK 251 447 -362 8 808 213 152 21 21 chr6 29333292 29333339 -120183698 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 808 377 20 20 0 chr6 29333361 29333411 -120183626 + (TAAAA)n Simple_repeat Simple_repeat 1 51 0 8 808 559 282 30 30 chr6 29333990 29334158 -120182879 - B3A SINE B2 -16 182 15 8 808 181 333 14 28 chr6 29334627 29334698 -120182339 - L4 LINE RTE -336 1693 1624 8 808 419 181 0 0 chr6 29334958 29335030 -120182007 - RSINE1 SINE B4 -22 143 72 8 808 1097 108 66 0 chr6 29335147 29335314 -120181723 + B2_Mm1t SINE B2 2 179 -14 8 808 361 102 298 107 chr6 29335337 29335458 -120181579 + B2_Mm2 SINE B2 47 190 -5 8 808 2353 87 74 57 chr6 29335528 29335932 -120181105 + RLTR10A LTR ERVK 1 411 0 8 808 230 324 73 59 chr6 29336357 29336577 -120180460 - L4 LINE RTE -1118 911 689 8 808 1575 255 51 13 chr6 29337241 29337713 -120179324 + RMER5 LTR ERV1 23 512 -22 8 808 223 295 0 124 chr6 29337698 29337787 -120179250 - B1F SINE Alu -5 144 67 8 808 269 212 24 36 chr6 29338200 29338283 -120178754 + C-rich Low_complexity Low_complexity 3 84 0 8 808 622 0 0 0 chr6 29338823 29338895 -120178142 + tRNA-Pro-CCY tRNA tRNA 1 72 -3 8 808 213 150 25 0 chr6 29339245 29339285 -120177752 + GA-rich Low_complexity Low_complexity 2 42 0 8 808 887 63 23 8 chr6 29339287 29339415 -120177622 + B1_Mus2 SINE Alu 17 146 -1 8 808 202 244 0 0 chr6 29339416 29339461 -120177576 + A-rich Low_complexity Low_complexity 1 45 0 8 808 610 254 0 0 chr6 29339712 29339846 -120177191 + Lx8 LINE L1 7208 7341 -132 8 808 793 134 22 22 chr6 29340202 29340339 -120176698 + B1_Mur4 SINE Alu 1 137 -13 8 808 447 19 0 0 chr6 29340341 29340393 -120176644 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 8 808 1259 56 38 38 chr6 29340686 29340871 -120176166 + B2_Mm1a SINE B2 2 186 -7 8 808 522 202 313 18 chr6 29340882 29341048 -120175989 + B3 SINE B2 1 215 -1 8 808 418 254 267 0 chr6 29341057 29341222 -120175815 + ID_B1 SINE B4 2 210 -14 8 808 1199 107 32 5 chr6 29341451 29341617 -120175420 + B2_Mm1a SINE B2 1 167 -26 8 808 231 61 0 0 chr6 29341617 29341650 -120175387 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 8 808 1199 107 32 5 chr6 29341650 29341671 -120175366 + B2_Mm1a SINE B2 168 193 0 8 808 842 139 6 18 chr6 29341757 29341925 -120175112 + GA-rich Low_complexity Low_complexity 3 168 0 8 808 503 232 70 126 chr6 29342141 29342284 -120174753 + B1_Mur1 SINE Alu 9 143 -6 8 808 301 331 86 16 chr6 29342460 29342665 -120174372 + L1M5 LINE L1 5563 5778 -2104 8 808 22 0 0 0 chr6 29343285 29343307 -120173730 + AT_rich Low_complexity Low_complexity 1 22 0 8 808 1052 198 15 5 chr6 29343650 29343853 -120173184 + B3 SINE B2 5 209 -7 8 808 432 294 42 51 chr6 29343886 29344101 -120172936 + Lx8 LINE L1 7205 7417 -56 8 808 301 296 0 0 chr6 29344177 29344258 -120172779 + ID4 SINE ID 3 83 0 8 808 972 115 7 0 chr6 29345186 29345334 -120171703 - B1_Mur4 SINE Alu 0 150 2 8 808 236 203 15 15 chr6 29346656 29346721 -120170316 + (CGG)n Simple_repeat Simple_repeat 2 66 0 8 808 556 274 194 0 chr6 29348359 29348534 -120168503 + B3 SINE B2 2 210 -6 8 808 249 108 0 0 chr6 29349226 29349263 -120167774 + (GGA)n Simple_repeat Simple_repeat 2 38 0 8 808 266 284 13 13 chr6 29349674 29349749 -120167288 + CT-rich Low_complexity Low_complexity 3 77 0 8 808 320 328 43 14 chr6 29350379 29350518 -120166519 + MIRb SINE MIR 9 151 -117 8 808 597 264 7 7 chr6 29350600 29350741 -120166296 + ID_B1 SINE B4 84 224 0 8 808 2126 146 5 36 chr6 29350830 29351215 -120165822 - RMER10B LTR ERVL -1 397 25 8 808 195 42 0 0 chr6 29351755 29351779 -120165258 + (T)n Simple_repeat Simple_repeat 1 24 0 8 808 1139 68 0 0 chr6 29351779 29351925 -120165112 - B1_Mus2 SINE Alu 0 147 2 8 808 226 379 26 0 chr6 29352117 29352233 -120164804 - L2 LINE L2 -986 2433 2315 8 808 203 317 40 32 chr6 29352287 29352411 -120164626 - L2 LINE L2 -1227 2192 2068 8 808 423 253 11 0 chr6 29353671 29353758 -120163279 - PB1 SINE Alu -35 92 5 8 808 420 220 200 0 chr6 29354339 29354439 -120162598 + PB1D7 SINE Alu 1 120 0 8 808 390 132 40 0 chr6 29354439 29354515 -120162522 + PB1D9 SINE Alu 42 120 0 8 808 914 264 30 75 chr6 29354715 29355010 -120162027 - B4A SINE B4 -4 288 7 8 808 1585 31 0 0 chr6 29355285 29355477 -120161560 - B2_Mm1a SINE B2 0 193 2 8 808 252 0 0 0 chr6 29355837 29355865 -120161172 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 808 305 341 56 26 chr6 29357092 29357324 -120159713 + L1MC3 LINE L1 7540 7778 -7 8 808 233 0 62 0 chr6 29357446 29357478 -120159559 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 8 808 743 154 31 0 chr6 29357478 29357608 -120159429 - B1_Mur2 SINE Alu -13 136 3 8 808 986 289 15 15 chr6 29357833 29358107 -120158930 - B4A SINE B4 -18 274 1 8 808 508 279 71 15 chr6 29358114 29358323 -120158714 - B3A SINE B2 -1 215 2 8 808 226 277 15 44 chr6 29358472 29358540 -120158497 + ID4_ SINE ID 9 74 -9 8 808 246 246 0 0 chr6 29358724 29358781 -120158256 + ID SINE ID 1 57 -167 8 808 564 29 0 0 chr6 29358858 29358928 -120158109 + (GA)n Simple_repeat Simple_repeat 1 70 0 8 808 198 0 0 0 chr6 29358928 29358950 -120158087 + (CAGG)n Simple_repeat Simple_repeat 1 22 0 8 808 848 98 30 0 chr6 29359637 29359769 -120157268 - URR1A DNA MER1_type -10 216 81 8 809 767 144 68 0 chr6 29360719 29360851 -120156186 + B1_Mus1 SINE Alu 6 146 -2 8 809 324 0 0 0 chr6 29361171 29361207 -120155830 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 809 457 301 22 138 chr6 29361952 29362176 -120154861 + ID_B1 SINE B4 2 199 -25 8 809 198 0 0 0 chr6 29363568 29363590 -120153447 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8 809 391 280 28 0 chr6 29363603 29363710 -120153327 - PB1D7 SINE Alu -10 110 1 8 809 394 229 0 0 chr6 29364291 29364361 -120152676 + ID4 SINE ID 3 72 -11 8 809 214 253 37 37 chr6 29368386 29368468 -120148569 + L2a LINE L2 3249 3330 -96 8 809 22 35 0 0 chr6 29368859 29368888 -120148149 + AT_rich Low_complexity Low_complexity 1 29 0 8 809 195 139 0 0 chr6 29370069 29370105 -120146932 + (GAAA)n Simple_repeat Simple_repeat 3 38 0 8 809 587 242 8 16 chr6 29373085 29373211 -120143826 - RSINE1 SINE B4 -33 132 8 8 809 349 282 0 0 chr6 29373699 29373777 -120143260 + RSINE1 SINE B4 57 134 -31 8 809 29 70 0 0 chr6 29373788 29373845 -120143192 + AT_rich Low_complexity Low_complexity 1 57 0 8 809 188 330 76 25 chr6 29373877 29373995 -120143042 - MIR SINE MIR -27 235 112 8 809 250 266 112 41 chr6 29374133 29374231 -120142806 + PB1D10 SINE Alu 13 117 0 8 809 551 273 103 0 chr6 29374317 29374511 -120142526 - ID_B1 SINE B4 -7 217 4 8 809 245 233 0 77 chr6 29375281 29375346 -120141691 - ID_B1 SINE B4 0 224 165 8 809 225 181 238 12 chr6 29375285 29375369 -120141668 - PB1D7 SINE Alu 0 120 18 8 809 242 29 29 0 chr6 29375782 29375817 -120141220 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 8 809 813 19 0 0 chr6 29375817 29375920 -120141117 - B1_Mus1 SINE Alu -13 135 33 8 809 2043 73 9 79 chr6 29377406 29377747 -120139290 + ORR1A4 LTR MaLR 5 321 -8 8 809 879 281 119 26 chr6 29377788 29378091 -120138946 - MTD LTR MaLR -88 331 1 8 809 391 284 78 0 chr6 29378095 29378197 -120138840 + RSINE1 SINE B4 41 150 -15 8 809 289 360 42 28 chr6 29378314 29378457 -120138580 - LTR33 LTR ERVL -357 158 14 8 809 1433 204 96 47 chr6 29378602 29379009 -120138028 - RMER15 LTR ERVL 0 575 149 8 809 492 191 114 0 chr6 29379276 29379381 -120137656 + B3A SINE B2 1 117 -81 8 809 357 24 0 0 chr6 29379398 29379440 -120137597 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 809 297 0 0 0 chr6 29379440 29379472 -120137565 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 809 318 50 0 0 chr6 29379568 29379608 -120137429 + (A)n Simple_repeat Simple_repeat 1 40 0 9 809 1165 81 6 28 chr6 29379610 29379768 -120137269 + B2_Mm1a SINE B2 2 160 -33 9 809 243 0 0 0 chr6 29379768 29379795 -120137242 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 809 1165 81 6 28 chr6 29379795 29379813 -120137224 + B2_Mm1a SINE B2 161 174 -19 9 809 345 280 76 7 chr6 29380187 29380202 -120136835 - MIRb SINE MIR -59 209 194 9 809 423 0 0 0 chr6 29380202 29380249 -120136788 + (GTTTG)n Simple_repeat Simple_repeat 1 47 0 9 809 361 279 80 9 chr6 29380249 29380416 -120136621 - MIR SINE MIR -75 193 13 9 809 339 25 0 0 chr6 29381404 29381444 -120135593 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 809 468 0 0 0 chr6 29382717 29382769 -120134268 + (TC)n Simple_repeat Simple_repeat 1 52 0 9 809 216 0 0 0 chr6 29382769 29382792 -120134245 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 809 25 83 0 0 chr6 29383092 29383152 -120133885 + GC_rich Low_complexity Low_complexity 1 60 0 9 809 21 0 0 0 chr6 29383434 29383455 -120133582 + GC_rich Low_complexity Low_complexity 1 21 0 9 809 360 0 0 0 chr6 29384993 29385033 -120132004 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 809 243 0 0 0 chr6 29385977 29386004 -120131033 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 809 222 195 0 0 chr6 29386454 29386495 -120130542 + (CACCC)n Simple_repeat Simple_repeat 2 42 0 9 809 931 222 93 30 chr6 29387380 29387649 -120129388 + B4A SINE B4 7 292 0 9 809 195 139 0 0 chr6 29387649 29387685 -120129352 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 809 600 286 170 0 chr6 29387971 29388153 -120128884 + ID_B1 SINE B4 9 221 -3 9 809 188 339 34 0 chr6 29388931 29388990 -120128047 - MIR SINE MIR -64 144 84 9 809 261 0 0 0 chr6 29391334 29391363 -120125674 + (TGGGGG)n Simple_repeat Simple_repeat 5 33 0 9 809 266 289 26 0 chr6 29393139 29393215 -120123822 + MIRc SINE MIR 112 189 -79 9 809 2212 191 75 61 chr6 29399544 29400119 -120116918 - RLTR31A_Mm LTR ERVK 0 584 2 9 809 207 0 0 0 chr6 29400411 29400434 -120116603 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 809 227 91 0 0 chr6 29403339 29403372 -120113665 + U2 snRNA snRNA 3 35 -153 9 809 285 318 67 35 chr6 29403382 29403509 -120113528 - MIR SINE MIR -146 130 3 9 809 320 167 0 6 chr6 29404603 29404675 -120112362 + PB1D9 SINE Alu 49 120 0 9 809 481 106 23 12 chr6 29404676 29404762 -120112275 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 9 809 324 0 0 0 chr6 29404864 29404900 -120112137 + (GA)n Simple_repeat Simple_repeat 2 37 0 9 809 1064 110 120 11 chr6 29408096 29408131 -120108906 - B2_Mm2 SINE B2 -1 194 162 9 809 222 37 0 0 chr6 29408131 29408158 -120108879 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 809 1064 110 120 11 chr6 29408158 29408297 -120108740 - B2_Mm2 SINE B2 -34 161 2 9 809 1174 82 0 0 chr6 29409763 29409909 -120107128 + B1_Mus1 SINE Alu 2 147 -1 9 809 1644 17 0 0 chr6 29409925 29410106 -120106931 + B2_Mm1a SINE B2 1 181 -12 9 809 351 0 0 0 chr6 29410106 29410145 -120106892 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 9 809 770 157 0 15 chr6 29410160 29410296 -120106741 + B1_Mus1 SINE Alu 15 148 0 9 809 456 172 0 0 chr6 29410306 29410393 -120106644 - ID4 SINE ID -60 92 6 9 809 462 36 0 0 chr6 29411898 29411954 -120105083 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 809 306 67 0 0 chr6 29411954 29411999 -120105038 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 809 213 81 54 0 chr6 29412019 29412056 -120104981 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 9 809 297 0 0 0 chr6 29412062 29412095 -120104942 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 809 359 241 0 57 chr6 29412372 29412460 -120104577 + B1_Mur2 SINE Alu 58 140 -9 9 809 576 0 0 0 chr6 29412460 29412524 -120104513 + (CA)n Simple_repeat Simple_repeat 2 65 0 9 809 976 110 73 0 chr6 29413853 29413989 -120103048 + B1_Mus1 SINE Alu 2 147 -1 9 809 228 342 26 26 chr6 29414183 29414297 -120102740 + L2c LINE L2 3269 3382 -5 9 809 458 233 26 23 chr6 29414710 29414865 -120102172 - MTEa LTR MaLR -25 354 202 9 809 816 143 0 22 chr6 29415256 29415392 -120101645 - B1_Mur3 SINE Alu 0 149 17 9 809 325 364 35 65 chr6 29415262 29415462 -120101575 - B4 SINE B4 -69 223 30 9 809 222 62 0 0 chr6 29415691 29415723 -120101314 + (TGG)n Simple_repeat Simple_repeat 1 32 0 9 809 633 152 9 0 chr6 29415737 29415842 -120101195 - B1_Mus2 SINE Alu -8 139 34 9 809 453 336 7 20 chr6 29415928 29416077 -120100960 - RSINE1 SINE B4 -6 159 13 9 809 1721 164 24 21 chr6 29416105 29416435 -120100602 + ORR1B1 LTR MaLR 41 371 -23 9 809 306 238 0 16 chr6 29416466 29416530 -120100507 - B1F SINE Alu -60 89 27 9 809 557 224 36 29 chr6 29416806 29416944 -120100093 + B1F1 SINE Alu 10 148 -1 9 809 865 87 253 7 chr6 29417006 29417156 -120099881 - B2_Mm2 SINE B2 -7 188 2 9 809 443 274 105 0 chr6 29417358 29417482 -120099555 + ID_B1 SINE B4 88 224 0 9 809 324 0 0 0 chr6 29418384 29418420 -120098617 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 809 463 240 84 15 chr6 29418573 29418704 -120098333 - RSINE1 SINE B4 -1 164 25 9 809 206 234 21 0 chr6 29419214 29419261 -120097776 + L2b LINE L2 3328 3375 0 9 809 422 115 61 49 chr6 29419561 29419643 -120097394 - B1_Mus2 SINE Alu 0 147 65 9 809 480 84 24 12 chr6 29419656 29419740 -120097297 + (TTCTC)n Simple_repeat Simple_repeat 3 87 0 9 809 386 296 66 48 chr6 29420743 29420806 -120096231 - CYRA11_Mm Unknown Y-chromosome -219 398 172 9 809 831 144 75 0 chr6 29420806 29420966 -120096071 + URR1B DNA MER1_type 54 225 0 9 809 1888 149 35 6 chr6 29421088 29421406 -120095631 - ORR1A4 LTR MaLR -2 327 1 9 809 423 0 0 0 chr6 29423523 29423570 -120093467 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 809 1084 112 0 0 chr6 29425535 29425678 -120091359 + B1_Mur4 SINE Alu 1 143 -7 9 809 584 245 34 27 chr6 29426415 29426562 -120090475 + B1F SINE Alu 2 149 0 9 809 236 304 38 0 chr6 29427173 29427252 -120089785 + MLT1A1 LTR MaLR 1 82 -478 9 809 687 294 6 0 chr6 29428736 29428913 -120088124 + B3 SINE B2 10 187 -29 9 809 333 0 0 0 chr6 29428913 29428950 -120088087 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 809 641 319 83 92 chr6 29428959 29429297 -120087740 - MTE2a LTR MaLR -44 335 1 9 809 872 157 57 0 chr6 29430205 29430345 -120086692 + B1_Mur4 SINE Alu 3 150 0 9 809 702 105 0 0 chr6 29430363 29430468 -120086569 + (GA)n Simple_repeat Simple_repeat 2 106 0 9 809 302 308 44 29 chr6 29430576 29430713 -120086324 + MLT1A1 LTR MaLR 270 408 0 9 809 276 314 83 35 chr6 29430713 29430833 -120086204 + LTR83 LTR ERVL 201 327 -453 9 809 950 87 62 48 chr6 29431026 29431171 -120085866 - B1_Mus1 SINE Alu 0 148 2 9 809 1361 69 0 33 chr6 29431339 29431358 -120085679 - B2_Mm2 SINE B2 -19 176 162 9 809 297 0 0 0 chr6 29431358 29431391 -120085646 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 9 809 1361 69 0 33 chr6 29431391 29431552 -120085485 - B2_Mm2 SINE B2 -34 161 2 9 809 25 90 0 0 chr6 29433070 29433137 -120083900 + AT_rich Low_complexity Low_complexity 1 67 0 9 809 381 321 27 0 chr6 29433151 29433263 -120083774 + PB1D10 SINE Alu 2 116 -1 9 809 757 234 71 33 chr6 29433305 29433517 -120083520 + ID_B1 SINE B4 2 221 -3 9 809 307 349 9 3 chr6 29433545 29433647 -120083390 + PB1D10 SINE Alu 24 129 -20 9 809 340 258 56 0 chr6 29433668 29433757 -120083280 - MIR SINE MIR -105 157 64 9 809 1959 133 82 15 chr6 29436071 29436414 -120080623 + ORR1B2 LTR MaLR 1 366 -1 9 809 332 217 14 0 chr6 29437720 29437789 -120079248 - U6 snRNA snRNA -3 104 35 9 809 666 111 20 10 chr6 29438472 29438572 -120078465 - PB1D9 SINE Alu -15 105 5 9 809 228 343 0 0 chr6 29438751 29438850 -120078187 + C-rich Low_complexity Low_complexity 1 99 0 9 809 1036 66 73 0 chr6 29439400 29439536 -120077501 - B1_Mm SINE Alu 0 147 2 9 809 998 242 14 18 chr6 29439544 29439767 -120077270 - ID_B1 SINE B4 -1 223 2 9 809 218 294 44 0 chr6 29440883 29440951 -120076086 + MIRc SINE MIR 111 181 -87 9 809 288 336 35 42 chr6 29441003 29441146 -120075891 + MIR SINE MIR 8 149 -113 9 809 551 292 7 0 chr6 29441147 29441291 -120075746 + RSINE1 SINE B4 2 146 -19 9 809 378 0 0 0 chr6 29441376 29441418 -120075619 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 809 210 213 0 96 chr6 29441418 29441470 -120075567 + L2b LINE L2 3313 3359 -16 9 809 489 34 0 0 chr6 29442536 29442595 -120074442 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 809 432 0 0 0 chr6 29443461 29443509 -120073528 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 809 378 0 0 0 chr6 29443509 29443550 -120073487 + (GA)n Simple_repeat Simple_repeat 2 43 0 9 809 1017 221 0 19 chr6 29443854 29444066 -120072971 + B3 SINE B2 9 216 0 9 809 424 282 6 1 chr6 29444102 29444205 -120072832 + ID_B1 SINE B4 73 174 -50 9 809 514 309 84 23 chr6 29444219 29444434 -120072603 + B4A SINE B4 10 237 -55 9 809 769 165 254 17 chr6 29444544 29444717 -120072320 - B3 SINE B2 -2 214 1 9 809 290 330 38 0 chr6 29444724 29444830 -120072207 - PB1D10 SINE Alu -5 112 3 9 809 619 157 48 24 chr6 29444923 29445047 -120071990 + RSINE1 SINE B4 2 128 -37 9 809 501 228 43 14 chr6 29445129 29445267 -120071770 + ID_B1 SINE B4 81 222 -2 9 809 245 210 0 16 chr6 29445414 29445477 -120071560 + (TTG)n Simple_repeat Simple_repeat 1 62 0 9 809 808 128 21 21 chr6 29445477 29445621 -120071416 - B1_Mus1 SINE Alu 0 148 5 1 809 651 218 70 38 chr6 29449310 29449496 -120067541 + MLT1C LTR MaLR 3 194 -273 1 809 982 95 146 0 chr6 29449604 29449762 -120067275 + B2_Mm2 SINE B2 1 181 -14 1 809 572 246 0 0 chr6 29449829 29449947 -120067090 + PB1D9 SINE Alu 2 119 -1 1 809 429 216 171 6 chr6 29450001 29450166 -120066871 + MLT1C LTR MaLR 267 505 0 1 809 261 254 24 23 chr6 29450179 29450281 -120066756 + MIR SINE MIR 95 199 -69 1 809 279 255 48 10 chr6 29450488 29450591 -120066446 - Charlie5 DNA MER1_type -108 2516 2410 1 809 204 114 0 64 chr6 29450592 29450639 -120066398 + T-rich Low_complexity Low_complexity 2 45 0 1 809 217 258 48 16 chr6 29450651 29450714 -120066323 - PB1D7 SINE Alu -10 110 46 1 809 356 304 0 34 chr6 29450749 29450868 -120066169 - PB1D10 SINE Alu 0 117 3 1 809 231 314 176 8 chr6 29451867 29451992 -120065045 - MIR SINE MIR -87 175 30 1 809 349 211 99 0 chr6 29452108 29452179 -120064858 + B3 SINE B2 1 78 -138 1 809 237 261 130 0 chr6 29452179 29452200 -120064837 + B4A SINE B4 1 104 -188 1 809 264 206 159 0 chr6 29453042 29453105 -120063932 + B1F1 SINE Alu 77 149 0 1 809 1053 44 73 0 chr6 29453108 29453245 -120063792 + B1_Mus2 SINE Alu 1 147 0 1 809 344 308 47 0 chr6 29453272 29453379 -120063658 + PB1D10 SINE Alu 1 112 -5 1 809 540 185 9 9 chr6 29453482 29453591 -120063446 + B1F2 SINE Alu 36 144 -5 1 809 416 270 9 9 chr6 29454794 29454906 -120062131 - B1F SINE Alu -37 112 1 1 809 226 307 0 111 chr6 29454826 29454925 -120062112 - MT2B2 LTR ERVL -349 235 148 1 809 289 247 12 36 chr6 29455086 29455170 -120061867 + ID4_ SINE ID 2 83 0 1 809 712 232 132 0 chr6 29455190 29455380 -120061657 + B3 SINE B2 2 216 0 1 809 553 224 16 23 chr6 29455403 29455531 -120061506 + B1_Mur2 SINE Alu 2 128 -21 1 809 270 56 0 0 chr6 29458084 29458120 -120058917 + (CACCC)n Simple_repeat Simple_repeat 1 36 0 1 809 921 211 6 11 chr6 29458324 29458501 -120058536 + B3 SINE B2 1 176 -40 1 809 302 123 0 17 chr6 29458512 29458570 -120058467 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 1 809 373 292 17 17 chr6 29458798 29458913 -120058124 + ID_B1 SINE B4 87 201 -23 1 809 255 31 0 0 chr6 29458930 29458962 -120058075 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 809 307 94 15 30 chr6 29459630 29459696 -120057341 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 1 809 213 39 0 0 chr6 29459699 29459725 -120057312 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 1 809 638 245 88 0 chr6 29459732 29459924 -120057113 - ID_B1 SINE B4 -12 212 4 1 809 890 148 0 0 chr6 29460353 29460488 -120056549 + B1_Mur4 SINE Alu 1 135 -15 1 809 504 72 0 0 chr6 29460488 29460557 -120056480 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 809 2809 68 31 3 chr6 29460557 29460942 -120056095 - MTB LTR MaLR 0 400 5 1 809 282 95 0 0 chr6 29460943 29460985 -120056052 + (CATA)n Simple_repeat Simple_repeat 4 45 0 1 809 213 242 82 17 chr6 29461227 29461313 -120055724 + MIR SINE MIR 74 159 -117 1 809 527 244 32 0 chr6 29461329 29461452 -120055585 + B1_Mur1 SINE Alu 10 136 -13 1 809 1469 53 16 0 chr6 29461463 29461652 -120055385 - B2_Mm2 SINE B2 -2 193 2 1 809 450 276 51 0 chr6 29461704 29461860 -120055177 - LTR16E2 LTR ERVL 0 568 405 1 809 224 114 45 0 chr6 29463256 29463300 -120053737 + G-rich Low_complexity Low_complexity 2 47 0 1 809 278 118 39 0 chr6 29463885 29463936 -120053101 + C-rich Low_complexity Low_complexity 6 58 0 1 809 1353 56 6 16 chr6 29463945 29464127 -120052910 - B2_Mm2 SINE B2 -14 181 2 1 809 443 265 49 0 chr6 29464173 29464275 -120052762 - RSINE1 SINE B4 -17 148 42 1 809 1178 48 0 0 chr6 29464650 29464795 -120052242 - B1_Mm SINE Alu -2 145 1 1 809 1008 104 35 90 chr6 29464822 29465022 -120052015 + B2_Mm2 SINE B2 1 189 -6 1 809 396 360 65 1 chr6 29465779 29465992 -120051045 - L1MC LINE L1 -1874 4272 4045 1 809 277 193 82 24 chr6 29466003 29466088 -120050949 - B1_Mm SINE Alu -51 96 7 1 809 1238 250 41 10 chr6 29467549 29467840 -120049197 + MTEb LTR MaLR 1 300 -79 1 809 206 205 0 0 chr6 29468611 29468650 -120048387 + CT-rich Low_complexity Low_complexity 1 39 0 1 809 255 336 93 0 chr6 29468650 29468757 -120048280 - PB1D10 SINE Alu 0 117 1 1 809 336 303 131 0 chr6 29468796 29468895 -120048142 + ID_B1 SINE B4 13 124 -100 1 809 879 134 0 0 chr6 29468993 29469172 -120047865 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 809 630 109 0 0 chr6 29469188 29469298 -120047739 + (TG)n Simple_repeat Simple_repeat 2 111 0 1 809 1133 22 14 0 chr6 29469535 29469674 -120047363 + (TCTCCC)n Simple_repeat Simple_repeat 4 144 0 1 809 258 296 34 45 chr6 29469676 29469853 -120047184 - RLTR21 LTR ERVK -321 1251 1077 1 809 2021 155 28 25 chr6 29469982 29470346 -120046691 + ORR1B2 LTR MaLR 3 367 0 1 809 676 329 26 45 chr6 29470787 29470958 -120046079 + MLT1C LTR MaLR 3 173 -294 1 809 427 177 12 12 chr6 29470958 29471038 -120045999 + ID4 SINE ID 3 82 -1 1 809 676 329 26 45 chr6 29471038 29471175 -120045862 + MLT1C LTR MaLR 174 304 -163 1 809 263 226 0 16 chr6 29471248 29471311 -120045726 + B4A SINE B4 18 79 -213 1 809 498 222 0 0 chr6 29471434 29471596 -120045441 + (CA)n Simple_repeat Simple_repeat 2 163 0 1 809 778 169 0 7 chr6 29471679 29471816 -120045221 + B1_Mur4 SINE Alu 15 150 0 1 809 453 256 116 0 chr6 29471822 29471943 -120045094 + B1_Mur1 SINE Alu 3 137 -12 1 809 438 20 0 0 chr6 29472012 29472063 -120044974 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 809 389 279 69 8 chr6 29475114 29475244 -120041793 + RSINE1 SINE B4 24 161 -4 1 809 884 234 28 14 chr6 29475311 29475523 -120041514 + B3 SINE B2 2 216 0 1 809 314 260 0 13 chr6 29475604 29475682 -120041355 + PB1 SINE Alu 27 103 -24 1 809 258 282 0 40 chr6 29475745 29475819 -120041218 + ID4_ SINE ID 2 72 -11 1 809 250 228 19 29 chr6 29476571 29476702 -120040335 + (CGGGG)n Simple_repeat Simple_repeat 1 129 0 1 809 288 0 0 0 chr6 29478990 29479022 -120038015 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 809 423 0 0 0 chr6 29479022 29479068 -120037969 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 809 1973 161 143 13 chr6 29479822 29480276 -120036761 - RLTR11A2 LTR ERVK 0 527 15 1 809 551 233 52 15 chr6 29481648 29481783 -120035254 - B1F1 SINE Alu -8 141 2 1 809 558 257 0 21 chr6 29481888 29482031 -120035006 - B1F2 SINE Alu -9 140 1 1 809 411 291 22 29 chr6 29482141 29482279 -120034758 - ID_B1 SINE B4 0 224 88 1 809 515 327 0 0 chr6 29482338 29482488 -120034549 - RSINE1 SINE B4 -13 152 3 1 809 1414 68 5 10 chr6 29482860 29483053 -120033984 + B2_Mm2 SINE B2 2 193 -2 1 809 225 270 26 26 chr6 29483132 29483208 -120033829 + ID2 SINE ID 6 81 -2 1 809 501 278 27 14 chr6 29483239 29483385 -120033652 + B1F SINE Alu 1 148 -1 1 809 622 228 6 51 chr6 29483260 29483415 -120033622 + ID_B1 SINE B4 103 246 -46 1 809 306 125 0 0 chr6 29483443 29483491 -120033546 + (GGA)n Simple_repeat Simple_repeat 2 49 0 1 809 189 107 0 0 chr6 29484566 29484594 -120032443 + (GGA)n Simple_repeat Simple_repeat 2 29 0 1 809 362 200 134 62 chr6 29487663 29487775 -120029262 - ID_B1 SINE B4 0 224 105 1 809 498 255 0 121 chr6 29487782 29487867 -120029170 + ID SINE ID 17 81 -143 1 809 434 239 16 89 chr6 29487867 29487991 -120029046 + PB1D10 SINE Alu 1 115 -2 1 809 566 225 31 0 chr6 29488159 29488288 -120028749 - B1_Mur2 SINE Alu -14 135 3 1 809 403 75 45 0 chr6 29488678 29488745 -120028292 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 1 809 347 261 74 4 chr6 29489142 29489241 -120027796 + RSINE1 SINE B4 2 105 -187 1 809 241 302 147 0 chr6 29489350 29489466 -120027571 - L1MC LINE L1 -2377 5505 5373 1 809 446 162 258 25 chr6 29489940 29490060 -120026977 - B1_Mus1 SINE Alu 0 148 1 1 809 402 262 99 51 chr6 29490409 29490703 -120026334 - RLTR15 LTR ERVK -51 308 1 1 809 273 109 0 0 chr6 29490842 29490888 -120026149 + (T)n Simple_repeat Simple_repeat 1 46 0 1 810 246 333 216 5 chr6 29492278 29492486 -120024551 + MIR SINE MIR 7 258 -4 1 810 258 278 191 18 chr6 29493541 29493651 -120023386 + MIR SINE MIR 8 136 -126 1 810 602 209 104 7 chr6 29494870 29495005 -120022032 + B1_Mur1 SINE Alu 2 149 0 1 810 1233 170 37 56 chr6 29495095 29495361 -120021676 + ORR1C2 LTR MaLR 1 261 -123 1 810 1252 165 121 8 chr6 29495361 29495635 -120021402 + ORR1C2 LTR MaLR 1 323 -51 1 810 249 33 0 0 chr6 29495635 29495665 -120021372 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1 810 1136 201 167 10 chr6 29495665 29495701 -120021336 + ORR1C2 LTR MaLR 324 359 -15 1 810 4859 177 183 43 chr6 29495696 29497006 -120020031 + ORR1C2-int LTR MaLR 6 1499 -10 1 810 401 142 65 25 chr6 29497003 29497104 -120019933 + ORR1C2 LTR MaLR 264 358 -16 1 810 531 0 0 0 chr6 29497908 29497967 -120019070 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 810 420 260 9 19 chr6 29498875 29498981 -120018056 - B1F SINE Alu -5 144 40 1 810 563 307 58 8 chr6 29499095 29499405 -120017632 + L1M3 LINE L1 4532 4859 -1287 1 810 762 154 81 0 chr6 29499405 29499541 -120017496 + B1_Mur4 SINE Alu 2 148 -2 1 810 241 336 43 38 chr6 29499541 29499555 -120017482 + L1M3 LINE L1 4860 4873 -1273 1 810 192 77 0 0 chr6 29499579 29499605 -120017432 + (GGAA)n Simple_repeat Simple_repeat 2 27 0 1 810 198 91 0 0 chr6 29499647 29499680 -120017357 + (T)n Simple_repeat Simple_repeat 1 33 0 1 810 380 277 25 51 chr6 29500010 29500128 -120016909 + PB1D7 SINE Alu 1 115 -5 1 810 749 184 27 41 chr6 29500319 29500466 -120016571 + B1_Mus1 SINE Alu 2 146 -2 2 810 195 129 0 0 chr6 29500480 29500511 -120016526 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3 810 549 239 168 0 chr6 29500702 29500934 -120016103 + MTE2b LTR MaLR 5 275 -104 4 810 291 192 29 48 chr6 29501359 29501463 -120015574 + (CA)n Simple_repeat Simple_repeat 1 102 0 5 810 1091 196 40 10 chr6 29502460 29502661 -120014376 - B3 SINE B2 -6 210 4 6 810 466 296 20 7 chr6 29502684 29502830 -120014207 + B1F SINE Alu 1 148 -1 7 810 499 291 7 76 chr6 29502911 29503056 -120013981 - B1F2 SINE Alu -7 142 8 8 810 1078 115 0 0 chr6 29503085 29503233 -120013804 - B1_Mus1 SINE Alu 0 148 1 9 810 549 194 28 0 chr6 29503234 29503342 -120013695 - PB1D9 SINE Alu 0 120 10 1 810 183 42 0 0 chr6 29503607 29503631 -120013406 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 810 28 48 0 0 chr6 29503905 29503947 -120013090 + AT_rich Low_complexity Low_complexity 1 42 0 1 810 575 253 158 0 chr6 29504003 29504149 -120012888 + B3 SINE B2 48 216 0 1 810 447 285 140 0 chr6 29505363 29505584 -120011453 + L1MC1 LINE L1 5953 6204 -129 1 810 252 0 0 0 chr6 29505588 29505616 -120011421 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 810 1758 196 40 0 chr6 29505710 29506036 -120011001 + MTE2b LTR MaLR 5 343 -36 1 810 441 188 244 17 chr6 29506062 29506181 -120010856 + B1_Mur4 SINE Alu 1 146 -4 1 810 1946 174 119 3 chr6 29506315 29506685 -120010352 + MTC LTR MaLR 1 413 -8 1 810 186 156 0 0 chr6 29507254 29507299 -120009738 + A-rich Low_complexity Low_complexity 28 72 0 1 810 249 286 0 67 chr6 29507313 29507388 -120009649 + B4A SINE B4 1 70 -222 2 810 351 302 9 0 chr6 29507400 29507506 -120009531 + B4A SINE B4 125 231 -61 2 810 225 275 37 12 chr6 29507541 29507622 -120009415 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 810 383 252 91 38 chr6 29507718 29507850 -120009187 - B1F SINE Alu -1 148 10 2 810 222 358 75 9 chr6 29507758 29507865 -120009172 - B4 SINE B4 -99 193 80 2 810 311 317 97 97 chr6 29507882 29508151 -120008886 - B4 SINE B4 0 292 24 2 810 276 245 0 0 chr6 29508132 29508181 -120008856 - PB1D10 SINE Alu -9 108 60 2 810 294 289 88 11 chr6 29508200 29508211 -120008826 - B4A SINE B4 -193 99 2 2 810 501 175 0 0 chr6 29508211 29508291 -120008746 - B3A SINE B2 -117 81 2 2 810 570 242 33 0 chr6 29508329 29508449 -120008588 + RSINE1 SINE B4 35 158 -7 2 810 565 239 90 0 chr6 29508475 29508609 -120008428 + B1F2 SINE Alu 1 146 -3 2 810 637 264 114 15 chr6 29509413 29509675 -120007362 + B4A SINE B4 3 290 -2 2 810 517 244 45 8 chr6 29510355 29510487 -120006550 - B1F SINE Alu -12 137 1 3 810 420 374 15 0 chr6 29510867 29510998 -120006039 + RSINE1 SINE B4 4 136 -29 3 810 909 201 0 0 chr6 29511778 29511927 -120005110 + B1_Mur1 SINE Alu 1 149 0 3 810 829 115 0 16 chr6 29512213 29512337 -120004700 + B1_Mur3 SINE Alu 28 149 0 3 810 21 36 0 0 chr6 29513168 29513196 -120003841 + AT_rich Low_complexity Low_complexity 1 28 0 3 810 684 43 86 0 chr6 29513203 29513296 -120003741 + B2_Mm2 SINE B2 2 102 -93 3 810 261 0 0 0 chr6 29513319 29513348 -120003689 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 810 367 233 0 120 chr6 29513357 29513474 -120003563 + MT2B LTR ERVL 155 257 -344 3 810 854 168 7 0 chr6 29513375 29513518 -120003519 + B1_Mur4 SINE Alu 7 150 0 3 810 26 64 0 0 chr6 29513564 29513611 -120003426 + AT_rich Low_complexity Low_complexity 1 47 0 3 810 388 267 10 0 chr6 29513615 29513756 -120003281 - B3 SINE B2 -23 193 1 4 810 363 305 102 28 chr6 29513907 29514015 -120003022 - B1F1 SINE Alu -1 116 1 4 810 504 226 0 34 chr6 29514234 29514353 -120002684 - PB1D10 SINE Alu -2 115 1 4 810 326 215 37 37 chr6 29514657 29514739 -120002298 - B1F1 SINE Alu 0 149 68 4 810 441 0 0 0 chr6 29515881 29515930 -120001107 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 810 26 30 0 0 chr6 29516015 29516048 -120000989 + AT_rich Low_complexity Low_complexity 1 33 0 4 810 680 234 14 28 chr6 29516050 29516195 -120000842 + B1_Mur1 SINE Alu 3 145 -4 4 810 736 195 210 11 chr6 29516200 29516376 -120000661 + B3 SINE B2 1 211 -5 4 810 477 295 38 69 chr6 29516549 29516709 -120000328 + B3A SINE B2 37 191 -7 4 810 404 308 202 0 chr6 29516791 29517028 -120000009 - B4A SINE B4 -6 286 2 4 810 732 211 21 0 chr6 29517203 29517345 -119999692 + B1_Mur4 SINE Alu 2 146 -4 5 810 277 299 13 13 chr6 29517482 29517560 -119999477 + ID4 SINE ID 3 80 -3 5 810 414 325 114 9 chr6 29517947 29518174 -119998863 + B4A SINE B4 3 253 -39 5 810 306 0 0 0 chr6 29518200 29518234 -119998803 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 810 212 238 0 0 chr6 29519165 29519207 -119997830 - ID4 SINE ID -41 42 1 5 810 406 205 0 74 chr6 29519374 29519469 -119997568 + L2a LINE L2 3338 3425 -1 5 810 1120 83 0 0 chr6 29519569 29519714 -119997323 - B1_Mus1 SINE Alu 0 148 4 5 810 1157 68 0 0 chr6 29521233 29521379 -119995658 - B1_Mus1 SINE Alu -2 146 1 5 810 231 360 13 0 chr6 29521745 29521820 -119995217 - MIR SINE MIR -169 93 18 5 810 218 139 0 53 chr6 29522401 29522439 -119994598 - MIRm SINE MIR -24 252 217 5 810 215 264 96 14 chr6 29522410 29522483 -119994554 - MIRb SINE MIR -29 239 161 6 810 1136 63 0 14 chr6 29523108 29523253 -119993784 + B1_Mus2 SINE Alu 5 147 0 6 810 192 321 54 0 chr6 29523461 29523517 -119993520 - MIR3 SINE MIR -46 162 104 6 810 1531 63 0 0 chr6 29524036 29524226 -119992811 - B2_Mm1t SINE B2 -3 190 1 6 810 244 311 122 0 chr6 29524281 29524371 -119992666 + ID_B1 SINE B4 77 177 -47 6 810 390 208 147 59 chr6 29524291 29524393 -119992644 + PB1D10 SINE Alu 6 116 -1 6 810 727 212 15 0 chr6 29524400 29524537 -119992500 + B1_Mur1 SINE Alu 1 139 -10 6 810 604 258 44 10 chr6 29525564 29525723 -119991314 - ID_B1 SINE B4 -9 215 65 6 810 830 148 52 0 chr6 29526004 29526139 -119990898 - B1_Mus1 SINE Alu -6 142 1 6 810 542 69 0 0 chr6 29526174 29526246 -119990791 + BC1_Mm scRNA scRNA 1 72 -80 6 810 698 245 24 24 chr6 29526337 29526504 -119990533 - B3A SINE B2 -31 167 1 7 810 1336 71 33 0 chr6 29526521 29526703 -119990334 - B2_Mm1t SINE B2 -5 188 1 7 810 622 237 180 6 chr6 29526795 29526973 -119990064 - B3 SINE B2 -7 209 1 7 810 295 297 40 26 chr6 29526997 29527073 -119989964 + B4A SINE B4 92 168 -124 7 810 258 297 113 47 chr6 29527073 29527103 -119989934 + PB1D9 SINE Alu 7 119 -1 7 810 400 224 13 0 chr6 29527113 29527189 -119989848 + ID2 SINE ID 3 79 -4 7 810 298 179 18 0 chr6 29527231 29527287 -119989750 - B1F SINE Alu -26 123 67 7 810 1423 55 50 0 chr6 29527333 29527514 -119989523 - B2_Mm1t SINE B2 -2 191 2 7 810 237 247 37 110 chr6 29527515 29527597 -119989440 - PB1D10 SINE Alu -41 76 1 7 810 1132 52 0 0 chr6 29527634 29527769 -119989268 - B1_Mus2 SINE Alu -12 135 1 7 810 243 88 0 0 chr6 29527769 29527803 -119989234 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 8 810 508 207 11 1 chr6 29527815 29527917 -119989120 - B1F2 SINE Alu -5 115 14 8 810 342 89 0 0 chr6 29527935 29527980 -119989057 - B1_Mus2 SINE Alu -7 140 96 8 810 405 0 0 0 chr6 29527982 29528027 -119989010 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 810 242 285 143 23 chr6 29528162 29528295 -119988742 + RSINE1 SINE B4 2 150 -15 8 810 776 220 66 28 chr6 29528837 29529019 -119988018 + B3A SINE B2 5 193 -5 8 810 627 314 53 12 chr6 29529106 29529277 -119987760 - B3A SINE B2 -20 178 1 8 810 417 276 76 17 chr6 29529788 29529906 -119987131 - ID_B1 SINE B4 -6 218 94 8 810 21 36 0 0 chr6 29530022 29530050 -119986987 + AT_rich Low_complexity Low_complexity 1 28 0 8 810 573 225 18 59 chr6 29530055 29530239 -119986798 - B1_Mur1 SINE Alu -4 145 2 8 810 876 179 0 0 chr6 29530454 29530588 -119986449 + B1_Mur4 SINE Alu 1 134 -16 9 810 243 79 0 0 chr6 29530588 29530626 -119986411 + (CAAT)n Simple_repeat Simple_repeat 4 41 0 9 810 320 386 17 9 chr6 29530795 29530910 -119986127 + B1F SINE Alu 2 117 -32 9 810 259 220 20 0 chr6 29531093 29531143 -119985894 + ID_B1 SINE B4 107 157 -67 9 810 219 320 174 10 chr6 29531143 29531186 -119985851 + B1_Mur4 SINE Alu 27 135 -15 9 810 423 271 62 8 chr6 29531348 29531478 -119985559 + B1F2 SINE Alu 8 144 -5 9 810 489 243 60 111 chr6 29531637 29531684 -119985353 - B2_Mm2 SINE B2 -1 194 146 9 810 657 0 0 0 chr6 29531684 29531757 -119985280 + (TG)n Simple_repeat Simple_repeat 1 73 0 9 810 760 197 151 6 chr6 29531757 29531908 -119985129 - B3 SINE B2 -34 182 7 9 810 507 54 67 13 chr6 29531974 29532049 -119984988 + B2_Mm2 SINE B2 1 79 -116 9 810 203 156 0 43 chr6 29532834 29532881 -119984156 + CT-rich Low_complexity Low_complexity 1 45 0 9 810 260 173 131 107 chr6 29532881 29532965 -119984072 - PB1D9 SINE Alu -1 119 34 1 810 232 236 133 40 chr6 29532994 29533069 -119983968 - ID4_ SINE ID 0 83 2 1 810 359 294 64 0 chr6 29533197 29533306 -119983731 - PB1D10 SINE Alu 0 117 2 1 810 404 301 157 20 chr6 29533470 29533667 -119983370 - MIR SINE MIR -14 248 25 1 810 826 119 8 0 chr6 29533673 29533791 -119983246 + B3 SINE B2 4 122 -94 1 810 26 0 0 0 chr6 29534032 29534058 -119982979 + AT_rich Low_complexity Low_complexity 1 26 0 1 810 577 241 40 40 chr6 29534278 29534429 -119982608 + B3A SINE B2 1 151 -47 1 810 318 196 16 240 chr6 29534503 29534624 -119982413 + ID_B1 SINE B4 124 217 -7 1 810 260 258 45 61 chr6 29534631 29534697 -119982340 + RSINE1 SINE B4 56 120 -45 1 810 495 218 0 67 chr6 29534731 29534835 -119982202 + B1_Mus2 SINE Alu 9 136 -13 1 810 225 0 0 0 chr6 29534835 29534860 -119982177 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 810 299 239 56 0 chr6 29534869 29534940 -119982097 + ID4 SINE ID 9 83 0 1 810 497 264 42 21 chr6 29535193 29535336 -119981701 - MER58B DNA MER1_type -25 316 171 1 810 676 156 21 111 chr6 29535703 29535847 -119981190 + B1_Mur2 SINE Alu 11 141 -8 1 810 255 125 0 0 chr6 29535862 29535902 -119981135 + (A)n Simple_repeat Simple_repeat 1 40 0 1 810 880 144 14 14 chr6 29536346 29536494 -119980543 - B1_Mur4 SINE Alu 0 150 3 1 810 269 277 15 0 chr6 29536500 29536565 -119980472 - ID_B1 SINE B4 -1 223 158 1 810 222 259 0 18 chr6 29536570 29536625 -119980412 + GA-rich Low_complexity Low_complexity 4 57 0 1 810 317 248 36 90 chr6 29536652 29536666 -119980371 - B3A SINE B2 -5 193 182 1 810 342 0 0 0 chr6 29536666 29536704 -119980333 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 810 317 248 36 90 chr6 29536704 29536800 -119980237 - B3A SINE B2 -17 181 89 1 810 1238 96 0 6 chr6 29537001 29537169 -119979868 + B2_Mm2 SINE B2 2 168 -27 1 810 602 260 0 8 chr6 29537350 29537474 -119979563 - B1_Mur1 SINE Alu -25 124 2 1 810 264 214 11 106 chr6 29537390 29537484 -119979553 - MT2B2 LTR ERVL -345 239 155 1 810 344 310 109 14 chr6 29537519 29537666 -119979371 + RSINE1 SINE B4 2 162 -3 1 810 671 242 59 24 chr6 29537713 29537882 -119979155 + B3A SINE B2 6 180 -18 1 810 600 274 15 0 chr6 29538341 29538476 -119978561 - ID_B1 SINE B4 -7 217 81 1 810 26 0 0 0 chr6 29539263 29539289 -119977748 + AT_rich Low_complexity Low_complexity 1 26 0 1 810 824 192 14 0 chr6 29539837 29539983 -119977054 + B1_Mur3 SINE Alu 2 149 0 1 810 189 250 0 0 chr6 29539983 29540043 -119976994 + A-rich Low_complexity Low_complexity 1 60 0 1 810 909 242 81 0 chr6 29540296 29540494 -119976543 - ID_B1 SINE B4 -3 221 8 1 810 262 160 0 0 chr6 29540562 29540612 -119976425 + B3 SINE B2 167 216 0 1 810 585 245 67 26 chr6 29540620 29540813 -119976224 + RCHARR1 DNA MER1_type 478 678 -296 1 810 1635 190 70 19 chr6 29540815 29541186 -119975851 + Lx2B LINE L1 6611 7000 0 1 810 329 194 32 0 chr6 29541190 29541252 -119975785 + RCHARR1 DNA MER1_type 679 742 -232 1 810 210 26 24 49 chr6 29541600 29541641 -119975396 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1 810 264 279 90 85 chr6 29541900 29542088 -119974949 + B4 SINE B4 86 274 -18 1 810 522 0 0 0 chr6 29542113 29542171 -119974866 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 810 306 0 0 0 chr6 29542171 29542204 -119974833 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 810 398 356 55 40 chr6 29542584 29542779 -119974258 + MLT1H1 LTR MaLR 49 286 -309 1 810 30 0 0 0 chr6 29543086 29543116 -119973921 + AT_rich Low_complexity Low_complexity 1 30 0 1 810 207 0 0 0 chr6 29543120 29543143 -119973894 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 810 1497 59 16 0 chr6 29543330 29543517 -119973520 + B2_Mm2 SINE B2 2 191 -4 1 810 230 0 33 0 chr6 29543599 29543629 -119973408 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 810 469 266 12 64 chr6 29544548 29544670 -119972367 - PB1D7 SINE Alu 0 127 9 1 810 699 184 207 0 chr6 29544724 29544903 -119972134 + B3 SINE B2 1 216 0 1 810 297 0 0 0 chr6 29544935 29544968 -119972069 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 810 273 311 9 54 chr6 29545085 29545197 -119971840 + PB1D10 SINE Alu 3 109 -8 1 810 192 77 0 0 chr6 29545204 29545230 -119971807 + (A)n Simple_repeat Simple_repeat 1 26 0 1 810 268 282 23 154 chr6 29545237 29545367 -119971670 + RSINE1 SINE B4 53 165 0 1 810 24 0 0 0 chr6 29545371 29545395 -119971642 + AT_rich Low_complexity Low_complexity 1 24 0 1 810 257 331 60 27 chr6 29545745 29545894 -119971143 + RSINE1 SINE B4 12 165 0 1 810 444 237 38 48 chr6 29546019 29546155 -119970882 + RSINE1 SINE B4 1 136 -29 1 810 252 0 0 0 chr6 29546175 29546203 -119970834 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 810 504 229 64 0 chr6 29546247 29546356 -119970681 + B3 SINE B2 101 216 0 1 810 218 282 106 0 chr6 29546427 29546512 -119970525 + B1F SINE Alu 5 98 -51 1 810 235 281 35 0 chr6 29546627 29546684 -119970353 + PB1D7 SINE Alu 14 72 -48 1 810 541 267 95 48 chr6 29546836 29547025 -119970012 + ID_B1 SINE B4 10 207 -17 1 810 1227 288 43 23 chr6 29547026 29547371 -119969666 + MTE2b LTR MaLR 28 379 0 1 810 421 246 146 14 chr6 29547557 29547701 -119969336 + RSINE1 SINE B4 3 165 0 1 810 286 257 67 24 chr6 29547935 29548035 -119969002 + MTEa LTR MaLR 252 361 -18 1 810 1387 81 11 0 chr6 29548054 29548239 -119968798 - B2_Mm1t SINE B2 -6 187 1 1 810 393 239 48 76 chr6 29548394 29548539 -119968498 - B1F SINE Alu -8 141 1 1 810 496 261 83 23 chr6 29548676 29548809 -119968228 + ID_B1 SINE B4 84 224 0 1 810 1177 49 0 0 chr6 29548845 29548989 -119968048 + B1_Mus2 SINE Alu 3 146 -1 1 810 272 231 0 44 chr6 29549000 29549068 -119967969 + ID_B1 SINE B4 151 215 -9 1 810 394 225 0 0 chr6 29549086 29549157 -119967880 + ID4 SINE ID 5 75 -8 1 810 272 300 14 0 chr6 29549171 29549241 -119967796 + ID4 SINE ID 4 74 -9 1 810 805 206 7 7 chr6 29550231 29550378 -119966659 + B1_Mur1 SINE Alu 3 149 0 1 810 650 253 41 50 chr6 29550384 29550584 -119966453 + B3A SINE B2 1 198 0 1 810 668 252 30 0 chr6 29550597 29550732 -119966305 - B1_Mur2 SINE Alu -9 140 2 1 810 418 323 32 49 chr6 29550758 29550992 -119966045 + RSINE1 SINE B4 3 220 -72 1 810 347 95 159 0 chr6 29550935 29550998 -119966039 + B1_Mur4 SINE Alu 78 150 0 1 810 215 230 0 39 chr6 29551553 29551578 -119965459 + A-rich Low_complexity Low_complexity 2 26 0 1 810 1116 88 0 0 chr6 29551578 29551725 -119965312 + B1_Mus2 SINE Alu 1 147 0 1 810 215 230 0 39 chr6 29551725 29551776 -119965261 + A-rich Low_complexity Low_complexity 27 75 0 1 810 21 0 0 0 chr6 29552310 29552331 -119964706 + AT_rich Low_complexity Low_complexity 1 21 0 1 810 827 199 144 5 chr6 29552384 29552571 -119964466 - ID_B1 SINE B4 -7 217 5 1 810 1310 101 16 11 chr6 29552949 29553140 -119963897 + B2_Mm2 SINE B2 2 193 -2 1 810 338 246 27 72 chr6 29553155 29553271 -119963766 + PB1D7 SINE Alu 1 112 -8 1 810 828 57 0 0 chr6 29553281 29553387 -119963650 + B1_Mus2 SINE Alu 31 136 -11 1 810 232 48 23 23 chr6 29553390 29553433 -119963604 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 810 231 114 0 0 chr6 29553523 29553558 -119963479 + (CTG)n Simple_repeat Simple_repeat 1 35 0 1 810 583 143 214 8 chr6 29553558 29553681 -119963356 - B1_Mus1 SINE Alu -1 147 3 1 810 381 321 82 38 chr6 29553808 29554099 -119962938 + HAL1 LINE L1 352 655 -1852 1 810 269 296 48 36 chr6 29554186 29554270 -119962767 + ID_B1 SINE B4 130 214 -10 1 810 1279 89 16 21 chr6 29554333 29554527 -119962510 + B2_Mm1a SINE B2 1 193 0 1 810 329 271 124 10 chr6 29554539 29554636 -119962401 + B1F1 SINE Alu 1 108 -41 1 810 263 264 14 27 chr6 29554659 29554733 -119962304 + B4 SINE B4 20 92 -200 1 810 310 267 42 25 chr6 29554885 29555004 -119962033 + HAL1 LINE L1 1710 1830 -677 1 810 873 122 0 73 chr6 29555090 29555240 -119961797 + B1_Mus1 SINE Alu 3 141 -7 1 810 508 237 266 5 chr6 29555261 29555460 -119961577 + RMER5 LTR ERV1 33 283 -251 1 810 607 165 16 57 chr6 29555465 29555587 -119961450 + PB1D9 SINE Alu 1 117 -3 1 810 324 48 0 0 chr6 29555734 29555776 -119961261 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 810 553 239 54 0 chr6 29555779 29555909 -119961128 - B3A SINE B2 -61 137 1 1 810 187 167 0 0 chr6 29556393 29556423 -119960614 - L2 LINE L2 -2491 928 899 1 810 450 239 111 0 chr6 29556519 29556636 -119960401 + RSINE1 SINE B4 30 159 -6 1 810 512 223 0 0 chr6 29556766 29556860 -119960177 - B1_Mus1 SINE Alu -16 132 39 1 810 21 57 0 0 chr6 29557295 29557330 -119959707 + AT_rich Low_complexity Low_complexity 1 35 0 1 810 251 333 0 0 chr6 29557330 29557402 -119959635 + ID4 SINE ID 3 74 -9 1 810 231 161 0 0 chr6 29557409 29557465 -119959572 + A-rich Low_complexity Low_complexity 1 56 0 1 810 1387 88 5 10 chr6 29557812 29558006 -119959031 + B2_Mm1t SINE B2 1 193 0 1 810 491 205 56 71 chr6 29558105 29558231 -119958806 - B1_Mus2 SINE Alu -22 125 2 1 810 1198 28 28 0 chr6 29560152 29560295 -119956742 + B1_Mus2 SINE Alu 1 147 0 1 810 300 111 0 0 chr6 29560297 29560342 -119956695 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 2 810 233 250 40 71 chr6 29560344 29560443 -119956594 + PB1D10 SINE Alu 21 116 -1 2 810 180 0 0 0 chr6 29560445 29560465 -119956572 + (A)n Simple_repeat Simple_repeat 1 20 0 2 810 782 176 14 0 chr6 29560466 29560608 -119956429 + B1_Mur4 SINE Alu 1 144 -6 2 810 282 56 0 0 chr6 29560809 29560845 -119956192 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 810 1144 35 0 27 chr6 29560845 29560985 -119956052 - B1_Mus2 SINE Alu -10 137 2 2 810 298 199 445 14 chr6 29561011 29561156 -119955881 - B3 SINE B2 -10 206 1 2 810 419 260 0 0 chr6 29561186 29561299 -119955738 + B1F SINE Alu 1 113 -36 2 810 299 333 32 0 chr6 29561299 29561310 -119955727 + B4 SINE B4 86 213 -79 2 810 279 216 0 0 chr6 29561302 29561353 -119955684 - B1_Mur4 SINE Alu -99 51 1 2 810 1114 88 0 13 chr6 29561383 29561532 -119955505 - B1_Mus1 SINE Alu 0 148 2 2 810 709 182 0 28 chr6 29561598 29561739 -119955298 + B1_Mur4 SINE Alu 12 148 -2 2 810 529 207 79 0 chr6 29561768 29561908 -119955129 + L1M4 LINE L1 5016 5166 -980 2 810 755 241 40 92 chr6 29561910 29562026 -119955011 + B3 SINE B2 1 102 -114 2 810 1190 35 14 0 chr6 29562026 29562169 -119954868 - B1_Mus2 SINE Alu -1 146 2 2 810 3711 127 74 14 chr6 29562169 29562817 -119954220 - RMER6C LTR ERVK -3 687 1 2 810 755 241 40 92 chr6 29562817 29562927 -119954110 + B3 SINE B2 103 215 -1 2 810 819 250 47 14 chr6 29562945 29563156 -119953881 + ID_B1 SINE B4 2 219 -5 2 810 374 128 103 11 chr6 29564158 29564245 -119952792 + Lx LINE L1 6557 6651 -3 2 810 1081 91 0 0 chr6 29564254 29564408 -119952629 + B2_Mm2 SINE B2 2 155 -40 2 810 1692 82 86 0 chr6 29564408 29564664 -119952373 + MTB LTR MaLR 1 278 -122 2 810 3515 66 6 4 chr6 29564664 29565153 -119951884 + RLTR1C LTR ERV1 1 490 -13 2 810 973 32 8 0 chr6 29565167 29565293 -119951744 + MTB LTR MaLR 274 400 0 2 810 704 174 114 0 chr6 29565351 29565483 -119951554 + B1_Mur4 SINE Alu 1 147 -3 2 810 626 231 7 33 chr6 29565514 29565666 -119951371 + B1_Mur3 SINE Alu 2 149 0 2 810 810 246 62 5 chr6 29565720 29565928 -119951109 + ID_B1 SINE B4 3 222 -2 2 810 228 312 0 0 chr6 29566709 29566773 -119950264 - B3 SINE B2 -152 64 1 2 810 580 275 21 37 chr6 29566773 29566961 -119950076 - B4 SINE B4 -65 227 43 2 810 1057 183 29 5 chr6 29566966 29567175 -119949862 + ORR1C1 LTR MaLR 1 214 -164 2 810 782 225 160 70 chr6 29567223 29567625 -119949412 + RMER4B LTR ERVK 46 549 -36 2 810 948 144 35 12 chr6 29567670 29567839 -119949198 + ORR1C1 LTR MaLR 204 376 -2 2 810 4917 230 81 35 chr6 29568078 29568095 -119948942 - Lx9 LINE L1 -153 7491 7475 2 810 366 23 0 0 chr6 29568095 29568138 -119948899 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 810 4917 230 81 35 chr6 29568138 29568709 -119948328 - Lx9 LINE L1 -170 7474 6900 2 810 1440 212 147 3 chr6 29568709 29569035 -119948002 + ORR1D1 LTR MaLR 1 373 -1 2 810 4917 224 85 35 chr6 29569035 29569940 -119947097 - Lx9 LINE L1 -745 6899 5753 2 810 502 264 108 0 chr6 29569940 29570088 -119946949 + B3 SINE B2 1 164 -52 2 810 259 154 0 30 chr6 29570210 29570277 -119946760 + GA-rich Low_complexity Low_complexity 3 67 0 2 810 268 265 0 42 chr6 29570871 29570942 -119946095 - ID4_ SINE ID -2 81 14 2 810 207 162 0 0 chr6 29571082 29571119 -119945918 + A-rich Low_complexity Low_complexity 1 37 0 2 810 279 79 0 0 chr6 29572000 29572038 -119944999 + (T)n Simple_repeat Simple_repeat 1 38 0 2 810 405 0 0 0 chr6 29572079 29572124 -119944913 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 810 1621 107 0 97 chr6 29572195 29572485 -119944552 - RLTR22_Mus LTR ERVK -4 1804 1543 2 810 5751 74 0 11 chr6 29572675 29573495 -119943542 - RLTR22_Mus LTR ERVK -997 811 1 2 810 250 279 63 0 chr6 29573497 29573576 -119943461 - MER81 DNA AcHobo -29 85 2 2 810 370 244 0 0 chr6 29573855 29573941 -119943096 + ID_B1 SINE B4 124 209 -15 2 810 424 227 58 8 chr6 29574170 29574290 -119942747 - B1F SINE Alu -10 139 14 2 810 282 56 0 0 chr6 29574297 29574333 -119942704 + (T)n Simple_repeat Simple_repeat 1 36 0 2 810 21 0 0 0 chr6 29574345 29574366 -119942671 + AT_rich Low_complexity Low_complexity 1 21 0 2 810 6943 61 0 26 chr6 29574374 29575279 -119941758 - L1Md_F2 LINE L1 0 6582 5702 2 810 243 0 0 0 chr6 29575279 29575306 -119941731 + (T)n Simple_repeat Simple_repeat 1 27 0 2 810 1266 41 0 0 chr6 29575306 29575453 -119941584 - B1_Mm SINE Alu 0 147 1 2 810 26 0 0 0 chr6 29575463 29575489 -119941548 + AT_rich Low_complexity Low_complexity 1 26 0 2 810 306 0 0 0 chr6 29575495 29575529 -119941508 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 810 386 207 11 11 chr6 29575623 29575711 -119941326 - L1M4 LINE L1 -958 5188 5101 2 810 318 267 0 13 chr6 29575935 29575994 -119941043 + RSINE1 SINE B4 90 147 -18 2 810 369 0 0 0 chr6 29575994 29576035 -119941002 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 810 318 267 0 13 chr6 29576035 29576051 -119940986 + RSINE1 SINE B4 148 163 -2 2 810 309 234 16 0 chr6 29576058 29576122 -119940915 + PB1D10 SINE Alu 39 103 -14 2 810 803 162 12 0 chr6 29576129 29576289 -119940748 + GA-rich Low_complexity Low_complexity 3 164 0 2 810 1770 151 54 3 chr6 29576316 29576514 -119940523 + MTC LTR MaLR 1 210 -211 2 810 1447 71 0 5 chr6 29576514 29576698 -119940339 + B2_Mm2 SINE B2 1 183 -12 2 810 288 0 0 0 chr6 29576698 29576730 -119940307 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 2 810 1770 151 54 3 chr6 29576730 29576862 -119940175 + MTC LTR MaLR 211 347 -74 2 810 514 188 67 25 chr6 29576863 29576983 -119940054 - RMER12 LTR ERVK -29 1293 1169 2 810 310 152 0 2 chr6 29576959 29577021 -119940016 + MTC LTR MaLR 358 421 0 2 810 227 289 55 13 chr6 29577021 29577132 -119939905 + RSINE1 SINE B4 9 151 -14 2 810 342 0 0 0 chr6 29577133 29577171 -119939866 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 810 312 70 0 0 chr6 29577171 29577213 -119939824 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 810 1270 27 0 0 chr6 29577241 29577388 -119939649 - B1_Mus2 SINE Alu 0 147 1 2 810 440 194 19 0 chr6 29577453 29577561 -119939476 + (CATA)n Simple_repeat Simple_repeat 4 113 0 2 810 417 212 0 12 chr6 29577682 29577763 -119939274 - ID4_ SINE ID -2 81 2 2 810 1284 184 122 27 chr6 29577840 29578136 -119938901 - MTD LTR MaLR -75 344 21 2 810 2186 132 51 19 chr6 29578148 29578527 -119938510 - L1_Mur2 LINE L1 -1533 4344 3949 2 810 4436 43 0 2 chr6 29578527 29579040 -119937997 - RLTR1B LTR ERV1 0 512 1 2 810 2186 132 51 19 chr6 29579040 29579071 -119937966 - L1_Mur2 LINE L1 -1929 3948 3921 2 810 505 179 95 0 chr6 29579065 29579160 -119937877 - L1_Mur2 LINE L1 -3031 2846 2743 2 810 715 188 14 20 chr6 29579161 29579308 -119937729 - L1_Mur2 LINE L1 -6516 570 425 2 810 186 150 0 0 chr6 29579385 29579425 -119937612 + (A)n Simple_repeat Simple_repeat 1 40 0 2 810 886 71 0 16 chr6 29579429 29579543 -119937494 + B1_Mus1 SINE Alu 23 136 -12 2 810 1092 106 0 0 chr6 29579543 29579704 -119937333 + (GGAGA)n Simple_repeat Simple_repeat 3 163 0 2 810 886 71 0 16 chr6 29579704 29579717 -119937320 + B1_Mus1 SINE Alu 137 148 0 2 810 307 255 64 0 chr6 29579811 29579905 -119937132 - BC1_Mm scRNA scRNA -49 103 4 2 810 821 185 0 0 chr6 29579963 29580109 -119936928 - B1_Mus1 SINE Alu -2 146 1 2 810 2401 149 60 127 chr6 29580265 29580832 -119936205 - RLTR24 LTR ERV1 0 529 1 2 810 189 0 0 0 chr6 29580972 29580993 -119936044 + (TTTC)n Simple_repeat Simple_repeat 1 21 0 2 810 477 0 0 0 chr6 29581004 29581057 -119935980 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 810 1039 90 0 0 chr6 29581057 29581202 -119935835 - B2_Mm2 SINE B2 -50 145 1 2 810 265 309 11 11 chr6 29581412 29581507 -119935530 - RMER5 LTR ERV1 -199 335 241 2 810 419 176 11 0 chr6 29581647 29581738 -119935299 + GA-rich Low_complexity Low_complexity 1 92 0 2 810 881 184 5 51 chr6 29581743 29581938 -119935099 - ORR1D1 LTR MaLR -188 186 1 2 810 1253 21 0 0 chr6 29583293 29583437 -119933600 + B1_Mm SINE Alu 2 145 -2 2 810 983 46 131 0 chr6 29583729 29583859 -119933178 + B1_Mm SINE Alu 1 147 0 2 810 737 147 38 95 chr6 29583995 29584153 -119932884 - B1_Mur4 SINE Alu -1 149 1 2 810 390 186 0 0 chr6 29584591 29584677 -119932360 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 810 653 296 91 0 chr6 29585094 29585181 -119931856 + B4A SINE B4 28 116 -176 2 810 195 42 0 0 chr6 29585181 29585205 -119931832 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 2 810 653 296 91 0 chr6 29585205 29585316 -119931721 + B4A SINE B4 117 242 -50 2 810 376 244 0 0 chr6 29585385 29585497 -119931540 + B1F SINE Alu 16 127 -22 2 810 341 82 20 0 chr6 29585491 29585540 -119931497 - ORR1B1 LTR MaLR -6 361 312 2 810 243 0 0 0 chr6 29585553 29585580 -119931457 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 810 892 26 0 33 chr6 29585580 29585694 -119931343 - B1_Mus1 SINE Alu -6 142 32 2 810 483 45 0 15 chr6 29585693 29585760 -119931277 - ORR1B1 LTR MaLR -46 348 283 2 810 295 181 25 100 chr6 29585990 29586070 -119930967 + ID SINE ID 1 74 -150 2 810 252 0 0 0 chr6 29586073 29586101 -119930936 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 810 468 0 0 0 chr6 29586101 29586152 -119930885 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 810 2197 129 66 40 chr6 29586627 29587007 -119930030 - ORR1B1 LTR MaLR -4 390 1 2 810 264 291 155 0 chr6 29587343 29587446 -119929591 + MLT1J LTR MaLR 74 192 -320 2 810 880 186 24 6 chr6 29587489 29587657 -119929380 - B3 SINE B2 0 216 46 2 810 347 201 34 8 chr6 29587645 29587763 -119929274 - B3 SINE B2 -74 124 1 2 810 444 289 35 21 chr6 29587767 29587912 -119929125 - B1F SINE Alu -1 148 2 2 810 401 193 169 9 chr6 29587947 29588093 -119928944 + B3 SINE B2 27 198 0 2 810 1213 104 16 37 chr6 29588149 29588338 -119928699 + B2_Mm2 SINE B2 1 185 -10 2 810 682 144 17 0 chr6 29588421 29588539 -119928498 + B1_Mur4 SINE Alu 1 120 -30 2 810 1356 109 5 0 chr6 29588711 29588903 -119928134 - B2_Mm1a SINE B2 0 193 1 2 810 892 111 31 77 chr6 29588903 29589098 -119927939 - Lx LINE L1 -14 6640 6455 3 810 3967 147 81 50 chr6 29589098 29590025 -119927012 - RMER17B LTR ERVK -1 957 2 3 810 3605 107 37 6 chr6 29590031 29590568 -119926469 - Lx LINE L1 -190 6464 5908 3 810 1018 75 75 0 chr6 29590579 29590713 -119926324 - B1_Mus1 SINE Alu 0 148 5 3 810 399 220 41 25 chr6 29590797 29590918 -119926119 + B3 SINE B2 91 213 -3 3 810 946 169 0 7 chr6 29590942 29591091 -119925946 + B1_Mur4 SINE Alu 3 150 0 3 810 5139 185 74 12 chr6 29591093 29592132 -119924905 + Lx5 LINE L1 5720 6822 -228 3 810 752 150 8 8 chr6 29592238 29592366 -119924671 - B1_Mur4 SINE Alu -22 128 1 3 810 1256 221 141 14 chr6 29592477 29592839 -119924198 + MTD LTR MaLR 12 419 0 3 810 189 0 0 0 chr6 29592845 29592866 -119924171 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 810 528 167 0 0 chr6 29592866 29592962 -119924075 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 810 723 81 0 0 chr6 29592983 29593082 -119923955 - B2_Mm2 SINE B2 -96 99 1 3 810 1106 235 8 0 chr6 29593091 29593325 -119923712 - Lx8 LINE L1 -223 7250 7015 3 810 297 266 106 0 chr6 29593402 29593515 -119923522 + MLT1J LTR MaLR 386 510 -2 3 810 333 0 0 0 chr6 29593973 29594010 -119923027 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 810 360 0 0 0 chr6 29594136 29594176 -119922861 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 810 262 279 35 0 chr6 29594465 29594551 -119922486 + RMER15 LTR ERVL 397 485 -90 3 810 331 290 0 11 chr6 29594697 29594791 -119922246 - MIR SINE MIR -66 196 104 3 810 259 303 282 9 chr6 29594906 29595016 -119922021 + RSINE1 SINE B4 14 153 -12 3 810 27 0 0 0 chr6 29595020 29595047 -119921990 + AT_rich Low_complexity Low_complexity 1 27 0 3 810 3816 72 0 0 chr6 29595048 29595531 -119921506 - L1_Mm LINE L1 -896 4987 4505 3 810 3475 68 0 13 chr6 29595531 29595991 -119921046 + L1Md_F2 LINE L1 6127 6580 -2 3 810 445 323 36 41 chr6 29596008 29596202 -119920835 + B4A SINE B4 24 216 -76 3 810 938 201 108 0 chr6 29596202 29596396 -119920641 + B3 SINE B2 2 216 0 3 810 216 0 0 0 chr6 29596515 29596539 -119920498 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 810 1137 265 7 7 chr6 29596539 29596828 -119920209 - L1M2 LINE L1 -528 5772 5484 3 810 321 279 45 9 chr6 29596830 29596942 -119920095 - B1F2 SINE Alu -1 116 1 3 810 879 154 15 0 chr6 29596977 29597113 -119919924 + B1_Mur4 SINE Alu 2 139 -11 3 810 373 298 73 20 chr6 29597129 29597226 -119919811 - L1MD LINE L1 -985 5161 5053 3 810 1574 42 16 10 chr6 29597226 29597419 -119919618 - B2_Mm2 SINE B2 -1 194 1 3 810 373 298 73 20 chr6 29597419 29597568 -119919469 - L1MD LINE L1 -1094 5052 4902 3 810 785 254 53 19 chr6 29597591 29597800 -119919237 + B3 SINE B2 1 216 0 3 810 878 232 43 10 chr6 29597885 29598094 -119918943 - B3 SINE B2 0 216 1 3 810 461 60 0 15 chr6 29598158 29598221 -119918816 + B1_Mus2 SINE Alu 76 138 -9 3 810 207 0 0 0 chr6 29598221 29598244 -119918793 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 3 810 23 0 0 0 chr6 29598267 29598290 -119918747 + AT_rich Low_complexity Low_complexity 1 23 0 3 810 1274 78 14 72 chr6 29598395 29598602 -119918435 + B2_Mm2 SINE B2 1 195 0 3 810 853 134 7 7 chr6 29598632 29598775 -119918262 + B1_Mus1 SINE Alu 6 148 0 3 810 248 164 65 16 chr6 29598987 29599049 -119917988 - MER5A1 DNA MER1_type -67 99 35 3 810 330 228 43 11 chr6 29599317 29599410 -119917627 - PB1D10 SINE Alu -1 116 21 3 810 867 126 21 14 chr6 29599434 29599579 -119917458 - B1_Mus2 SINE Alu 0 147 2 3 810 235 200 99 14 chr6 29599610 29599681 -119917356 + ID_B1 SINE B4 135 211 -13 3 810 237 186 57 0 chr6 29600134 29600204 -119916833 + (TTAA)n Simple_repeat Simple_repeat 3 76 0 3 810 250 207 108 12 chr6 29600209 29600292 -119916745 - ID_B1 SINE B4 -41 183 93 3 810 605 276 66 11 chr6 29600527 29600710 -119916327 + MTD LTR MaLR 10 202 -217 3 810 832 181 13 7 chr6 29600718 29600868 -119916169 + B3A SINE B2 1 151 -47 3 810 3943 147 76 22 chr6 29600865 29601642 -119915395 + MTB_Mm-int LTR MaLR 440 1258 0 3 810 1227 107 0 25 chr6 29601642 29601843 -119915194 + MTB_Mm LTR MaLR 1 196 -211 3 810 1014 222 15 55 chr6 29601843 29602115 -119914922 + Lx5 LINE L1 6786 7046 -4 3 810 977 125 82 17 chr6 29602131 29602321 -119914716 + MTC LTR MaLR 220 407 -14 3 810 435 112 0 0 chr6 29602341 29602421 -119914616 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 810 237 132 0 0 chr6 29602440 29602478 -119914559 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 810 604 179 27 88 chr6 29602546 29602693 -119914344 - B1_Mur2 SINE Alu -11 138 1 3 810 275 219 10 0 chr6 29603163 29603259 -119913778 + GA-rich Low_complexity Low_complexity 1 97 0 3 810 592 272 0 52 chr6 29603272 29603427 -119913610 - B1F SINE Alu -2 147 1 3 810 2775 155 65 37 chr6 29603900 29604410 -119912627 + RLTR28 LTR ERVL 1 524 0 3 810 428 123 0 14 chr6 29604705 29604779 -119912258 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 3 810 689 204 14 40 chr6 29604779 29604927 -119912110 - B1_Mur3 SINE Alu -5 144 1 3 810 1143 111 5 72 chr6 29604951 29605146 -119911891 - B2_Mm1a SINE B2 -10 183 2 3 810 618 259 96 49 chr6 29605366 29605646 -119911391 - L1M5 LINE L1 -2183 5602 5327 3 810 219 205 38 13 chr6 29606114 29606193 -119910844 + CT-rich Low_complexity Low_complexity 3 83 0 3 810 203 0 0 36 chr6 29606242 29606270 -119910767 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 810 1097 51 0 7 chr6 29606270 29606408 -119910629 - B1_Mm SINE Alu -9 138 2 3 810 474 282 84 7 chr6 29606418 29606561 -119910476 - ID_B1 SINE B4 -7 217 64 3 810 223 102 0 63 chr6 29606622 29606685 -119910352 + T-rich Low_complexity Low_complexity 2 60 0 3 810 1162 55 14 0 chr6 29606713 29606859 -119910178 - B1_Mus1 SINE Alu 0 148 1 3 810 337 222 258 25 chr6 29606877 29606997 -119910040 - B1F SINE Alu -1 148 1 3 810 2668 132 45 0 chr6 29607035 29607436 -119909601 - MTC LTR MaLR -2 419 1 3 810 277 213 0 0 chr6 29607446 29607507 -119909530 - MLT1D LTR MaLR -7 498 438 3 810 335 226 75 38 chr6 29607507 29607613 -119909424 + PB1D7 SINE Alu 1 110 -10 3 810 248 306 180 8 chr6 29607669 29607791 -119909246 + RSINE1 SINE B4 3 145 -20 3 810 809 46 0 0 chr6 29607874 29607982 -119909055 - B1_Mm SINE Alu 0 147 40 3 810 530 326 43 39 chr6 29607995 29608276 -119908761 - MLT1D LTR MaLR -112 393 112 3 810 204 40 0 0 chr6 29608377 29608402 -119908635 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 3 810 1428 44 50 0 chr6 29608458 29608613 -119908424 + B2_Mm1a SINE B2 2 156 -37 3 810 207 0 0 0 chr6 29608613 29608636 -119908401 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 810 1428 44 50 0 chr6 29608636 29608662 -119908375 + B2_Mm1a SINE B2 157 191 -2 3 810 1712 143 276 8 chr6 29609904 29610218 -119906819 - RLTR41 LTR ERV1 0 446 50 3 810 450 36 0 0 chr6 29610218 29610274 -119906763 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 810 1712 143 276 8 chr6 29610274 29610311 -119906726 - RLTR41 LTR ERV1 -397 49 2 3 810 799 134 39 0 chr6 29610318 29610445 -119906592 + B1_Mur2 SINE Alu 6 137 -12 3 810 698 62 0 10 chr6 29610445 29610542 -119906495 + (GAAA)n Simple_repeat Simple_repeat 2 97 0 3 810 223 50 0 70 chr6 29611043 29611086 -119905951 + (TCCCC)n Simple_repeat Simple_repeat 5 44 0 3 810 254 50 25 0 chr6 29611185 29611225 -119905812 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 3 810 915 98 0 95 chr6 29611226 29611354 -119905683 - B2_Mm2 SINE B2 -41 154 42 3 810 1709 31 0 0 chr6 29611354 29611547 -119905490 - B2_Mm1a SINE B2 0 193 1 3 810 915 98 0 95 chr6 29611547 29611587 -119905450 - B2_Mm2 SINE B2 -154 41 2 3 810 233 278 19 0 chr6 29611998 29612013 -119905024 - ID4 SINE ID 0 83 29 3 810 242 179 0 0 chr6 29612013 29612052 -119904985 - ID SINE ID -156 68 30 3 810 502 207 0 35 chr6 29612106 29612221 -119904816 - ID_B1 SINE B4 -1 223 113 3 810 327 261 102 88 chr6 29612221 29612243 -119904794 - B1F SINE Alu 0 108 1 3 810 307 269 52 55 chr6 29612612 29612807 -119904230 + MTEb LTR MaLR 167 364 -15 3 810 243 0 0 0 chr6 29612823 29612850 -119904187 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 810 858 164 8 0 chr6 29612853 29612987 -119904050 - B1_Mur3 SINE Alu -13 136 2 3 810 982 54 131 0 chr6 29613010 29613140 -119903897 - B1_Mus2 SINE Alu 0 147 1 3 810 491 281 196 41 chr6 29613174 29613445 -119903592 - MLT1C LTR MaLR -149 318 6 3 810 1238 41 7 0 chr6 29613547 29613692 -119903345 + B1_Mus2 SINE Alu 2 147 0 3 810 532 219 17 34 chr6 29614016 29614134 -119902903 + RMER2 LTR ERV1 1 116 -451 3 810 1127 225 21 42 chr6 29614125 29614366 -119902671 + RMER2 LTR ERV1 228 463 -104 3 810 1110 151 44 10 chr6 29614370 29614583 -119902454 + RLTR16 LTR ERVK 1 239 -329 3 810 284 217 145 0 chr6 29614583 29614666 -119902371 + Lx4B LINE L1 6955 7049 -9 3 810 1286 149 0 37 chr6 29614682 29614898 -119902139 - B3 SINE B2 -8 208 1 3 810 782 65 0 18 chr6 29614931 29615041 -119901996 - BC1_Mm scRNA scRNA -44 108 1 3 810 679 181 13 0 chr6 29615106 29615261 -119901776 + CT-rich Low_complexity Low_complexity 2 158 0 3 810 301 294 47 38 chr6 29615264 29615370 -119901667 - PB1D10 SINE Alu -10 107 1 3 810 261 0 0 0 chr6 29615516 29615545 -119901492 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 810 1165 76 0 0 chr6 29616684 29616829 -119900208 - B1_Mus1 SINE Alu -1 147 3 3 810 194 0 39 0 chr6 29616836 29616862 -119900175 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 810 1443 81 5 0 chr6 29618424 29618610 -119898427 + B2_Mm2 SINE B2 1 187 -8 4 810 739 324 70 55 chr6 29618614 29619055 -119897982 - MT2A LTR ERVL -7 547 64 4 810 1186 61 0 0 chr6 29619185 29619332 -119897705 - B1_Mus2 SINE Alu 0 147 1 4 810 251 239 192 0 chr6 29619332 29619430 -119897607 - RSINE1 SINE B4 -45 120 3 4 810 336 188 47 0 chr6 29619430 29619490 -119897547 - MTEa LTR MaLR -316 63 1 4 810 864 275 62 23 chr6 29619460 29619769 -119897268 - RMER5 LTR ERV1 -2 532 212 4 810 2288 66 26 19 chr6 29619822 29620199 -119896838 - RLTR10A LTR ERVK -2 388 1 4 810 384 225 22 0 chr6 29620400 29620489 -119896548 + B4A SINE B4 1 91 -201 4 810 588 287 58 32 chr6 29620498 29620653 -119896384 + RSINE1 SINE B4 7 165 0 4 810 723 187 0 0 chr6 29620654 29620825 -119896212 + (CA)n Simple_repeat Simple_repeat 2 172 0 4 810 333 276 92 30 chr6 29621040 29621196 -119895841 - ORR1D1 LTR MaLR -241 167 9 4 810 1289 160 19 40 chr6 29621393 29621718 -119895319 - RMER17C LTR ERVK -8 402 85 4 810 810 219 19 17 chr6 29621720 29622007 -119895030 - RMER17C LTR ERVK -327 482 1 4 811 276 102 0 0 chr6 29622373 29622422 -119894615 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 811 612 59 0 0 chr6 29622423 29622508 -119894529 + (GA)n Simple_repeat Simple_repeat 2 86 0 4 811 342 0 0 0 chr6 29622610 29622648 -119894389 + (CTG)n Simple_repeat Simple_repeat 3 40 0 4 811 239 346 53 118 chr6 29623469 29623715 -119893322 - MLT1K LTR MaLR -7 588 359 4 811 361 102 0 74 chr6 29623774 29623869 -119893168 + GA-rich Low_complexity Low_complexity 1 88 0 4 811 553 183 15 15 chr6 29624403 29624536 -119892501 + (CATA)n Simple_repeat Simple_repeat 4 136 0 4 811 516 294 55 64 chr6 29624821 29625198 -119891839 + MTEa LTR MaLR 3 377 -2 4 811 420 244 104 22 chr6 29625201 29625335 -119891702 - MLT1A0 LTR MaLR 0 365 221 4 811 880 268 0 25 chr6 29625452 29625651 -119891386 + ID_B1 SINE B4 15 208 -16 4 811 1560 52 0 15 chr6 29625765 29625962 -119891075 - B2_Mm2 SINE B2 -1 194 1 4 811 776 236 48 33 chr6 29626110 29626320 -119890717 + B3 SINE B2 1 213 -3 4 811 261 338 0 0 chr6 29626463 29626537 -119890500 - Ricksha_c DNA MuDR -1609 439 366 4 811 246 236 153 0 chr6 29626615 29626687 -119890350 - MLT1A0 LTR MaLR -325 83 1 4 811 704 301 26 42 chr6 29627283 29627658 -119889379 + L1MA4 LINE L1 5663 5989 -1655 4 811 374 193 213 18 chr6 29627821 29627976 -119889061 - RMER1C Other Other -2 1340 1156 4 811 211 290 63 16 chr6 29627976 29627999 -119889038 - RSINE1 SINE B4 -98 67 2 4 811 221 225 0 0 chr6 29627999 29628039 -119888998 - B3A SINE B2 -158 40 1 4 811 1163 81 0 0 chr6 29628216 29628364 -119888673 + B1_Mus1 SINE Alu 1 148 0 4 811 225 211 0 0 chr6 29628593 29628645 -119888392 + CT-rich Low_complexity Low_complexity 1 52 0 4 811 204 67 0 0 chr6 29628645 29628675 -119888362 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 4 811 367 282 24 0 chr6 29628881 29628966 -119888071 - RSINE1 SINE B4 -13 152 66 4 811 583 262 14 7 chr6 29629007 29629149 -119887888 - B1F SINE Alu 0 149 7 4 811 212 289 113 107 chr6 29629009 29629168 -119887869 - B4 SINE B4 -63 229 70 4 811 337 302 47 16 chr6 29629753 29629881 -119887156 + ERVL-E-int LTR ERVL 672 803 -4864 4 811 3238 33 30 2 chr6 29629922 29630319 -119886718 - RLTR10C LTR ERVK -28 408 1 4 811 847 214 58 24 chr6 29630443 29630649 -119886388 - B3 SINE B2 0 216 4 4 811 389 316 158 0 chr6 29630683 29630854 -119886183 + ERVL-E-int LTR ERVL 976 1173 -4541 4 811 443 307 54 16 chr6 29631020 29631149 -119885888 - MER20 DNA MER1_type -84 135 2 4 811 322 288 146 46 chr6 29631151 29631199 -119885838 + ERVL-E-int LTR ERVL 1214 1261 -4453 4 811 984 114 0 0 chr6 29631199 29631348 -119885689 + (TA)n Simple_repeat Simple_repeat 2 150 0 4 811 499 266 86 20 chr6 29631348 29631637 -119885400 + ERVL-E-int LTR ERVL 1262 1584 -4083 4 811 318 250 28 0 chr6 29631665 29631737 -119885300 - B2_Mm2 SINE B2 -120 75 2 4 811 207 232 91 68 chr6 29631913 29632001 -119885036 + L3 LINE CR1 2148 2237 -2252 4 811 607 291 66 103 chr6 29632112 29632414 -119884623 + ERVL-E-int LTR ERVL 2066 2356 -3311 4 811 405 0 0 0 chr6 29632470 29632515 -119884522 + (CAGAA)n Simple_repeat Simple_repeat 2 46 0 4 811 306 73 0 0 chr6 29632570 29632611 -119884426 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 811 1006 137 0 20 chr6 29632978 29633127 -119883910 + B1_Mur4 SINE Alu 1 146 -4 4 811 1055 149 22 11 chr6 29633127 29633302 -119883735 - B2_Mm2 SINE B2 -16 179 3 4 811 238 281 59 59 chr6 29634567 29634669 -119882368 + L3 LINE CR1 869 970 -3519 4 811 774 239 0 0 chr6 29634852 29634990 -119882047 + B3A SINE B2 5 142 -56 4 811 26 30 0 0 chr6 29634995 29635028 -119882009 + AT_rich Low_complexity Low_complexity 1 33 0 4 811 281 259 0 0 chr6 29635054 29635112 -119881925 - ID_B1 SINE B4 -20 204 147 4 811 1340 86 11 0 chr6 29635112 29635298 -119881739 - B2_Mm1a SINE B2 -4 189 2 4 811 2920 221 80 130 chr6 29635329 29636439 -119880598 + RMER1B Other Other 1 1055 -11 4 811 770 161 13 0 chr6 29636443 29636592 -119880445 + (TATATG)n Simple_repeat Simple_repeat 4 154 0 4 811 469 281 26 9 chr6 29636601 29636716 -119880321 + RSINE1 SINE B4 13 129 -36 4 811 231 114 0 0 chr6 29636743 29636778 -119880259 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 811 392 0 21 0 chr6 29636826 29636874 -119880163 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 811 776 175 13 47 chr6 29637459 29637609 -119879428 - B1_Mur1 SINE Alu -1 148 4 4 811 450 149 103 0 chr6 29637789 29637896 -119879141 - Lx6 LINE L1 0 7460 7343 4 811 1577 211 108 45 chr6 29637896 29638277 -119878760 + MTD LTR MaLR 13 417 -2 4 811 854 223 61 52 chr6 29638277 29638490 -119878547 + B3 SINE B2 2 216 0 4 811 469 281 18 0 chr6 29638494 29638608 -119878429 + RSINE1 SINE B4 2 117 -48 4 811 259 156 0 22 chr6 29638699 29638745 -119878292 + ID_B1 SINE B4 113 157 -67 4 811 1424 75 37 0 chr6 29638745 29638932 -119878105 + B2_Mm2 SINE B2 2 195 0 4 811 321 289 7 99 chr6 29639082 29639224 -119877813 + L1MC5 LINE L1 7779 7907 -54 4 811 308 300 20 10 chr6 29639234 29639335 -119877702 + PB1 SINE Alu 1 102 -25 4 811 933 237 20 0 chr6 29639974 29640172 -119876865 - B3 SINE B2 -12 204 3 4 811 2114 157 83 0 chr6 29640185 29640535 -119876502 + RLTR14 LTR ERV1 4 382 0 4 811 324 0 0 0 chr6 29640630 29640666 -119876371 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 811 2315 135 321 7 chr6 29640667 29641085 -119875952 + RLTR12A LTR ERVK 15 564 -4 4 811 418 260 47 127 chr6 29641078 29641228 -119875809 - B3A SINE B2 0 198 61 4 811 779 145 68 55 chr6 29641360 29641506 -119875531 - B1_Mus1 SINE Alu 0 148 1 4 811 442 243 19 28 chr6 29641560 29641666 -119875371 + PB1 SINE Alu 21 125 -2 4 811 597 263 23 0 chr6 29641701 29641834 -119875203 + B1_Mur2 SINE Alu 13 148 -1 4 811 1510 48 27 0 chr6 29641840 29642027 -119875010 + B2_Mm1a SINE B2 2 193 0 4 811 1276 266 92 35 chr6 29642039 29642440 -119874597 - Lx8 LINE L1 -305 7168 6745 4 811 630 0 0 0 chr6 29642457 29642527 -119874510 + (TTCTCC)n Simple_repeat Simple_repeat 3 72 0 4 811 333 257 25 74 chr6 29642527 29642641 -119874396 - ID_B1 SINE B4 -9 215 107 4 811 599 225 9 0 chr6 29642532 29642643 -119874394 - B1_Mur1 SINE Alu -14 135 24 4 811 900 219 6 0 chr6 29643061 29643221 -119873816 + B3A SINE B2 2 162 -36 4 811 390 21 0 0 chr6 29643226 29643273 -119873764 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 811 23 97 0 0 chr6 29644306 29644378 -119872659 + GC_rich Low_complexity Low_complexity 1 72 0 4 811 243 0 0 0 chr6 29645197 29645224 -119871813 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 811 27 0 0 0 chr6 29646457 29646484 -119870553 + AT_rich Low_complexity Low_complexity 1 27 0 4 811 368 128 21 161 chr6 29646509 29646602 -119870435 + RLTR42 LTR ERVK 93 172 -67 4 811 195 318 118 27 chr6 29646742 29646852 -119870185 + MIR SINE MIR 33 152 -56 4 811 309 51 0 0 chr6 29647588 29647627 -119869410 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 4 811 191 367 30 10 chr6 29647798 29647897 -119869140 + L2c LINE L2 3281 3381 -6 4 811 466 256 39 23 chr6 29648719 29648847 -119868190 - ID_B1 SINE B4 -2 222 93 4 811 791 72 0 9 chr6 29648856 29648968 -119868069 + (TCTCC)n Simple_repeat Simple_repeat 2 112 0 4 811 437 228 0 190 chr6 29648970 29649055 -119867982 - B1_Mur3 SINE Alu 0 149 91 4 811 641 215 136 53 chr6 29649055 29649320 -119867717 - B4 SINE B4 -4 288 2 4 811 437 228 0 190 chr6 29649320 29649418 -119867619 - B1_Mur3 SINE Alu -59 90 1 4 811 418 209 6 178 chr6 29649460 29649617 -119867420 + B1F SINE Alu 19 148 -1 4 811 4826 54 0 7 chr6 29649735 29650332 -119866705 - L1Md_F2 LINE L1 0 6582 5990 4 811 490 260 0 10 chr6 29650436 29650537 -119866500 - B1F SINE Alu -47 102 3 4 811 252 287 123 4 chr6 29651336 29651481 -119865556 + MIRc SINE MIR 6 158 -118 4 811 479 262 126 40 chr6 29651526 29651677 -119865360 + RSINE1 SINE B4 2 165 0 4 811 3001 75 31 3 chr6 29652366 29652751 -119864286 - MTA_Mm LTR MaLR 0 396 1 4 811 336 191 0 16 chr6 29652833 29652897 -119864140 + ID_B1 SINE B4 125 187 -37 4 811 718 204 186 37 chr6 29652932 29653120 -119863917 + B3 SINE B2 1 216 0 4 811 1968 247 104 10 chr6 29653210 29653793 -119863244 + Lx7 LINE L1 6804 7575 -121 4 811 300 127 0 0 chr6 29653793 29653848 -119863189 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 811 334 271 65 56 chr6 29653848 29653963 -119863074 + Lx7 LINE L1 7576 7695 -1 4 811 21 71 0 0 chr6 29654014 29654056 -119862981 + AT_rich Low_complexity Low_complexity 1 42 0 5 811 575 258 19 19 chr6 29654077 29654231 -119862806 - RSINE1 SINE B4 -9 156 3 5 811 1034 224 209 18 chr6 29654330 29654766 -119862271 - L1MC3 LINE L1 -185 7600 7082 5 811 766 245 49 9 chr6 29654851 29655050 -119861987 - B3A SINE B2 0 216 13 5 811 566 231 123 32 chr6 29655163 29655414 -119861623 - B4A SINE B4 -18 274 1 5 811 258 200 56 20 chr6 29655418 29655518 -119861519 - L1MC3 LINE L1 -1120 6922 6736 5 811 390 280 31 101 chr6 29656218 29656377 -119860660 - MER5B DNA MER1_type -16 162 15 5 811 1199 294 91 67 chr6 29656492 29656955 -119860082 - MLT1D LTR MaLR -31 474 1 5 811 297 302 185 0 chr6 29657061 29657180 -119859857 - B1F SINE Alu -5 144 4 5 811 371 282 1 1 chr6 29657340 29657429 -119859608 - RSINE1 SINE B4 -202 90 2 5 811 243 88 0 0 chr6 29657749 29657783 -119859254 - U2 snRNA snRNA -154 34 1 5 811 206 264 75 0 chr6 29658526 29658579 -119858458 - MIRb SINE MIR -35 233 177 5 811 489 279 32 25 chr6 29658590 29658748 -119858289 + RSINE1 SINE B4 3 161 -4 5 811 621 219 207 6 chr6 29658770 29658949 -119858088 - B3 SINE B2 -1 215 1 5 811 640 137 248 0 chr6 29658984 29659101 -119857936 + B1_Mus1 SINE Alu 1 146 -2 5 811 604 246 30 70 chr6 29659172 29659373 -119857664 + B3A SINE B2 3 195 -3 5 811 381 262 29 10 chr6 29659376 29659480 -119857557 - PB1D10 SINE Alu -8 109 4 5 811 399 98 0 0 chr6 29659585 29659646 -119857391 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 811 223 322 52 62 chr6 29659748 29659844 -119857193 + MIRb SINE MIR 109 203 -65 5 811 438 287 0 25 chr6 29661554 29661672 -119855365 + B1_Mur2 SINE Alu 22 136 -13 5 811 682 234 28 0 chr6 29661697 29661842 -119855195 + B1_Mur1 SINE Alu 1 149 0 5 811 643 148 197 0 chr6 29661963 29662085 -119854952 + B1_Mm SINE Alu 1 146 -1 5 811 1393 239 76 3 chr6 29663014 29663358 -119853679 - ORR1D2 LTR MaLR -1 369 1 5 811 352 152 40 10 chr6 29663715 29663815 -119853222 + (TA)n Simple_repeat Simple_repeat 1 103 0 5 811 740 167 79 14 chr6 29663977 29664117 -119852920 + B1_Mur4 SINE Alu 2 150 0 5 811 243 360 39 20 chr6 29664133 29664235 -119852802 - BC1_Mm scRNA scRNA -47 105 2 5 811 313 291 135 9 chr6 29664276 29664387 -119852650 + B1F1 SINE Alu 5 129 -20 5 811 339 194 30 0 chr6 29664387 29664454 -119852583 + ID4_ SINE ID 4 72 -11 5 811 1225 81 81 0 chr6 29664470 29664642 -119852395 + B2_Mm2 SINE B2 2 187 -8 5 811 1446 33 49 11 chr6 29664652 29664836 -119852201 + B2_Mm1a SINE B2 3 193 0 5 811 419 331 38 8 chr6 29664904 29665035 -119852002 + ID_B1 SINE B4 88 222 -2 5 811 1233 82 0 0 chr6 29665098 29665256 -119851781 - B2_Mm2 SINE B2 -35 160 3 5 811 416 275 22 0 chr6 29665289 29665380 -119851657 + RSINE1 SINE B4 55 147 -18 5 811 519 45 0 0 chr6 29665381 29665447 -119851590 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 811 653 238 168 19 chr6 29665448 29665757 -119851280 - L1MB3 LINE L1 -130 6053 5699 5 811 1225 48 7 0 chr6 29665923 29666069 -119850968 - B1_Mus2 SINE Alu 0 147 1 5 811 450 0 0 0 chr6 29666293 29666343 -119850694 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 811 420 71 0 0 chr6 29666343 29666398 -119850639 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 811 644 24 12 0 chr6 29666465 29666549 -119850488 - L1Md_A LINE L1 0 6582 6498 5 811 241 266 58 96 chr6 29669275 29669379 -119847658 + BC1_Mm scRNA scRNA 22 121 -31 5 811 200 111 28 0 chr6 29670054 29670090 -119846947 + (TCC)n Simple_repeat Simple_repeat 3 39 0 5 811 261 0 0 0 chr6 29670130 29670159 -119846878 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 811 357 351 0 0 chr6 29670167 29670298 -119846739 - MLT1C LTR MaLR -10 495 365 5 811 300 195 207 0 chr6 29670471 29670558 -119846479 + RSINE1 SINE B4 2 106 -59 5 811 1219 68 0 0 chr6 29670646 29670793 -119846244 + B1_Mus1 SINE Alu 2 148 0 5 811 207 0 0 0 chr6 29670793 29670816 -119846221 + (A)n Simple_repeat Simple_repeat 1 23 0 5 811 273 246 108 0 chr6 29670816 29670881 -119846156 - MLT1D LTR MaLR -387 118 47 5 811 329 301 96 0 chr6 29671115 29671198 -119845839 + PB1 SINE Alu 21 111 -16 5 811 430 350 112 21 chr6 29671557 29671799 -119845238 + L1M5 LINE L1 4805 5068 -1078 5 811 568 271 190 21 chr6 29672085 29672322 -119844715 - MLT1C LTR MaLR -186 281 5 5 811 828 169 0 0 chr6 29672679 29672803 -119844234 + B3 SINE B2 7 130 -86 5 811 714 330 103 58 chr6 29672884 29673367 -119843670 - MLT1D LTR MaLR 0 505 1 5 811 1363 233 54 95 chr6 29673664 29674053 -119842984 + MTE2a LTR MaLR 1 373 -6 5 811 1283 79 90 0 chr6 29674123 29674301 -119842736 + B2_Mm2 SINE B2 2 195 0 5 811 595 233 53 23 chr6 29674317 29674441 -119842596 + ID_B1 SINE B4 84 211 -13 5 811 606 63 0 0 chr6 29674441 29674520 -119842517 + (GGAAA)n Simple_repeat Simple_repeat 3 81 0 5 811 505 254 24 32 chr6 29674870 29674990 -119842047 + B1F1 SINE Alu 19 139 -10 5 811 198 0 0 0 chr6 29674990 29675012 -119842025 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 811 730 281 26 61 chr6 29675013 29675244 -119841793 + MT2A LTR ERVL 157 379 -154 5 811 334 287 21 0 chr6 29675305 29675399 -119841638 - L1MD2 LINE L1 -200 6159 6064 5 811 752 256 6 16 chr6 29675448 29675631 -119841406 + B3A SINE B2 2 182 -16 5 811 657 348 0 0 chr6 29675672 29675850 -119841187 + B3A SINE B2 3 180 -18 5 811 292 73 36 18 chr6 29675875 29675931 -119841106 + (TTTTTG)n Simple_repeat Simple_repeat 4 60 0 5 811 748 168 56 49 chr6 29675947 29676091 -119840946 - B1_Mur3 SINE Alu 0 149 5 5 811 22 35 0 0 chr6 29676104 29676133 -119840904 + AT_rich Low_complexity Low_complexity 1 29 0 5 811 526 235 10 10 chr6 29676137 29676240 -119840797 - B3A SINE B2 -26 172 70 5 811 348 253 52 21 chr6 29676300 29676397 -119840640 + BC1_Mm scRNA scRNA 1 100 -52 5 811 1469 262 45 55 chr6 29676432 29676872 -119840165 - L1MD2 LINE L1 -317 6042 5607 5 811 252 0 0 0 chr6 29676872 29676900 -119840137 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 811 1469 262 45 55 chr6 29676900 29677020 -119840017 - L1MD2 LINE L1 -753 5606 5488 5 811 207 0 0 0 chr6 29677045 29677068 -119839969 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 811 411 21 0 0 chr6 29677070 29677118 -119839919 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 811 246 200 67 0 chr6 29677129 29677174 -119839863 - tRNA-Ala-GCA tRNA tRNA -9 66 19 5 811 351 204 87 0 chr6 29677176 29677279 -119839758 - L1MD2 LINE L1 -893 5466 5355 5 811 233 127 17 52 chr6 29677279 29677337 -119839700 + CT-rich Low_complexity Low_complexity 1 56 0 5 811 288 284 86 0 chr6 29677347 29677428 -119839609 - PB1 SINE Alu -16 111 24 5 811 583 226 57 28 chr6 29677576 29677717 -119839320 - B1_Mur3 SINE Alu -2 147 3 5 811 2096 167 67 89 chr6 29677724 29678308 -119838729 + Lx7 LINE L1 7118 7688 -8 5 811 626 237 65 0 chr6 29678314 29678453 -119838584 - B1_Mur4 SINE Alu 0 150 3 5 811 465 185 25 0 chr6 29678477 29678596 -119838441 + GA-rich Low_complexity Low_complexity 3 124 0 5 811 766 231 36 50 chr6 29678660 29678879 -119838158 + B3 SINE B2 1 216 0 5 811 307 326 33 17 chr6 29678884 29679065 -119837972 - L1MD2 LINE L1 -1107 5039 4856 5 811 700 143 0 0 chr6 29679093 29679198 -119837839 + B3 SINE B2 2 106 -110 5 811 684 235 107 0 chr6 29679252 29679401 -119837636 - B3 SINE B2 -35 181 17 5 811 326 248 57 16 chr6 29679410 29679533 -119837504 - L1M3 LINE L1 -1680 4460 4333 5 811 1520 58 11 0 chr6 29680378 29680568 -119836469 + B2_Mm1t SINE B2 2 193 0 5 811 25 0 0 0 chr6 29680742 29680767 -119836270 + AT_rich Low_complexity Low_complexity 1 25 0 5 811 999 219 35 0 chr6 29680774 29680975 -119836062 - B3 SINE B2 -8 208 1 5 811 414 282 0 0 chr6 29681009 29681112 -119835925 + PB1D7 SINE Alu 18 120 0 5 811 555 56 0 0 chr6 29681169 29681240 -119835797 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 5 811 1174 89 0 22 chr6 29681242 29681426 -119835611 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 811 924 152 7 0 chr6 29681449 29681594 -119835443 - B1_Mur4 SINE Alu 0 150 5 5 811 1079 104 6 0 chr6 29681602 29681766 -119835271 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 5 811 545 248 55 0 chr6 29681773 29681882 -119835155 - ID_B1 SINE B4 -18 206 92 5 811 234 265 55 101 chr6 29681943 29682052 -119834985 - B3A SINE B2 -25 173 70 5 811 562 202 42 10 chr6 29682124 29682261 -119834776 + B1_Mur1 SINE Alu 2 149 0 5 811 336 77 0 0 chr6 29682263 29682315 -119834722 + (CCAA)n Simple_repeat Simple_repeat 4 55 0 5 811 2353 134 10 44 chr6 29682684 29683096 -119833941 + RMER10B LTR ERVL 1 398 0 5 811 321 240 79 79 chr6 29683236 29683376 -119833661 - L1MEd LINE L1 -4997 1122 983 5 811 423 0 0 0 chr6 29683425 29683472 -119833565 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 811 216 0 0 0 chr6 29683780 29683804 -119833233 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5 811 992 60 104 8 chr6 29683808 29683942 -119833095 - B1_Mus2 SINE Alu 0 147 1 5 811 1340 212 50 121 chr6 29683950 29684347 -119832690 + MTE2a LTR MaLR 11 379 0 5 811 672 119 0 0 chr6 29684634 29684743 -119832294 + (GAAA)n Simple_repeat Simple_repeat 3 111 0 5 811 180 0 0 0 chr6 29685276 29685296 -119831741 + (C)n Simple_repeat Simple_repeat 1 20 0 5 811 26 0 0 0 chr6 29685623 29685649 -119831388 + GC_rich Low_complexity Low_complexity 1 26 0 6 811 201 129 0 0 chr6 29686057 29686088 -119830949 + (CTG)n Simple_repeat Simple_repeat 1 31 0 6 811 24 0 0 0 chr6 29686088 29686112 -119830925 + GC_rich Low_complexity Low_complexity 1 24 0 6 811 1074 146 88 29 chr6 29687565 29687770 -119829267 + URR1B DNA MER1_type 5 221 -4 6 811 333 354 55 7 chr6 29688032 29688177 -119828860 + RSINE1 SINE B4 13 164 -1 6 811 1023 136 14 0 chr6 29688215 29688362 -119828675 + B1_Mur2 SINE Alu 1 149 0 6 811 189 147 0 0 chr6 29688534 29688568 -119828469 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 811 202 370 23 68 chr6 29689316 29689493 -119827544 - L2c LINE L2 -201 3186 3018 6 811 266 255 8 141 chr6 29689653 29689781 -119827256 + MT2B2 LTR ERVL 153 263 -321 6 811 519 255 9 9 chr6 29689682 29689793 -119827244 + B1F1 SINE Alu 10 120 -29 6 811 861 260 6 0 chr6 29689810 29689987 -119827050 + B3A SINE B2 2 179 -19 6 811 366 23 0 0 chr6 29690942 29690985 -119826052 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 811 762 162 0 0 chr6 29691060 29691196 -119825841 + (TA)n Simple_repeat Simple_repeat 1 136 0 6 811 189 0 0 0 chr6 29691224 29691245 -119825792 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 811 1443 64 5 26 chr6 29691288 29691480 -119825557 - B2_Mm1a SINE B2 -5 188 1 6 811 570 119 95 60 chr6 29691500 29691616 -119825421 - B1_Mus1 SINE Alu -3 145 26 6 811 441 316 69 27 chr6 29691673 29692104 -119824933 - L1M5 LINE L1 -745 5428 4980 6 811 237 321 37 0 chr6 29692255 29692336 -119824701 - Charlie4a DNA MER1_type -37 471 388 6 811 861 270 110 50 chr6 29692351 29692663 -119824374 + L1M2 LINE L1 5259 5550 -750 6 811 315 0 0 0 chr6 29692663 29692698 -119824339 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 811 861 269 133 35 chr6 29692698 29692880 -119824157 + L1M2 LINE L1 5551 5775 -525 6 811 646 158 35 0 chr6 29692883 29692997 -119824040 + PB1D9 SINE Alu 2 119 -1 6 811 259 271 36 6 chr6 29693012 29693111 -119823926 + L1M2 LINE L1 5787 5885 -406 6 811 406 192 22 200 chr6 29693302 29693441 -119823596 - B1F1 SINE Alu -9 140 33 6 811 1301 27 0 0 chr6 29693441 29693587 -119823450 - B1_Mm SINE Alu 0 147 2 6 811 323 225 0 219 chr6 29693587 29693632 -119823405 - PB1D7 SINE Alu -84 36 1 6 811 31 58 0 0 chr6 29693661 29693713 -119823324 + AT_rich Low_complexity Low_complexity 1 52 0 6 811 457 248 9 27 chr6 29693736 29693848 -119823189 + RSINE1 SINE B4 42 151 -14 6 811 424 258 35 81 chr6 29693895 29693928 -119823109 + ID_B1 SINE B4 60 223 0 6 811 626 207 58 29 chr6 29693928 29694067 -119822970 + B1_Mur1 SINE Alu 7 149 0 6 811 360 238 119 0 chr6 29694192 29694276 -119822761 + PB1D10 SINE Alu 6 99 -18 6 811 200 34 0 33 chr6 29694289 29694319 -119822718 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 6 811 560 217 43 0 chr6 29694322 29694437 -119822600 + RSINE1 SINE B4 4 123 -42 6 811 297 0 0 0 chr6 29694448 29694481 -119822556 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 811 398 286 38 0 chr6 29694647 29694752 -119822285 + PB1D10 SINE Alu 1 109 -8 6 811 757 148 15 30 chr6 29694779 29694911 -119822126 - B1_Mur1 SINE Alu -13 136 7 6 811 1408 188 32 172 chr6 29695212 29695643 -119821394 - ORR1D1 LTR MaLR -3 371 1 6 811 413 148 198 0 chr6 29695688 29695769 -119821268 - B3 SINE B2 -118 98 2 6 811 327 191 0 0 chr6 29695791 29695859 -119821178 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 811 370 208 14 0 chr6 29695886 29695958 -119821079 - ID4 SINE ID -10 73 1 6 811 373 312 127 9 chr6 29696141 29696434 -119820603 - L1M5 LINE L1 -602 5522 5200 6 811 287 24 0 23 chr6 29696435 29696478 -119820559 + B1_Mus2 SINE Alu 106 147 0 6 811 810 204 45 0 chr6 29696488 29696664 -119820373 - B3A SINE B2 -2 196 13 6 811 225 0 0 0 chr6 29696734 29696759 -119820278 + (T)n Simple_repeat Simple_repeat 1 25 0 6 811 1260 18 9 26 chr6 29696796 29697027 -119820010 + (TG)n Simple_repeat Simple_repeat 1 226 0 6 811 501 284 42 21 chr6 29697079 29697223 -119819814 + B1F1 SINE Alu 1 147 -2 6 811 1931 169 50 17 chr6 29697237 29697599 -119819438 - ORR1D1 LTR MaLR 0 374 1 6 811 1207 2 62 0 chr6 29697650 29698058 -119818979 + (CTGTG)n Simple_repeat Simple_repeat 1 433 0 6 811 1198 13 57 0 chr6 29698071 29699145 -119817892 + (CTGTG)n Simple_repeat Simple_repeat 1 1135 0 6 811 447 73 0 0 chr6 29699146 29699214 -119817823 + (GGCTG)n Simple_repeat Simple_repeat 2 69 0 6 811 689 267 16 55 chr6 29699214 29699396 -119817641 + B4A SINE B4 35 209 -83 6 811 883 164 14 7 chr6 29699482 29699629 -119817408 + B1_Mur1 SINE Alu 2 149 0 6 811 842 106 38 0 chr6 29699672 29699804 -119817233 - B1_Mur3 SINE Alu 0 149 13 6 811 236 280 34 0 chr6 29699712 29699830 -119817207 - ORR1D1-int LTR MaLR -756 753 632 6 811 360 105 174 38 chr6 29699946 29700056 -119816981 - B2_Mm2 SINE B2 -5 190 47 6 811 1395 68 11 0 chr6 29700092 29700268 -119816769 - B2_Mm1t SINE B2 -14 179 2 6 811 477 278 106 25 chr6 29700330 29700529 -119816508 - ID_B1 SINE B4 -9 215 1 6 811 420 134 0 35 chr6 29700616 29700701 -119816336 + Lx3B LINE L1 6892 6973 0 6 811 276 111 0 0 chr6 29701281 29701326 -119815711 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 811 389 265 103 29 chr6 29701328 29701464 -119815573 - RSINE1 SINE B4 -18 147 2 6 811 648 321 79 36 chr6 29701479 29701757 -119815280 + MER47B DNA MER2_type 1 290 -128 6 811 438 309 128 10 chr6 29702079 29702283 -119814754 - MIR SINE MIR -36 232 1 6 811 1100 149 82 0 chr6 29702959 29703154 -119813883 + B3 SINE B2 1 211 -5 6 811 419 269 25 31 chr6 29703237 29703372 -119813665 + MER20B DNA MER1_type 52 191 -28 6 811 333 305 171 18 chr6 29704048 29704218 -119812819 - MIR SINE MIR 0 262 67 6 811 573 211 186 53 chr6 29706232 29706517 -119810520 + MER33 DNA MER1_type 1 323 -1 6 811 680 264 19 0 chr6 29707796 29707951 -119809086 + B3A SINE B2 3 160 -38 6 811 388 0 39 0 chr6 29707956 29708008 -119809029 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 811 245 276 0 17 chr6 29708097 29708156 -119808881 - MER5B DNA MER1_type -97 81 24 6 811 231 217 233 0 chr6 29708165 29708225 -119808812 + ID4_ SINE ID 1 74 -9 6 811 196 329 57 34 chr6 29710438 29710526 -119806511 + L2 LINE L2 1284 1373 -2046 6 811 2220 141 11 0 chr6 29710526 29710874 -119806163 - RLTR19-int LTR ERVK -750 5387 5036 6 811 516 106 0 0 chr6 29710933 29711018 -119806019 + (CA)n Simple_repeat Simple_repeat 1 85 0 6 811 228 332 143 15 chr6 29712104 29712300 -119804737 - MIR SINE MIR -34 228 8 6 811 634 186 102 0 chr6 29713070 29713188 -119803849 - B3 SINE B2 -86 130 1 6 811 304 208 19 0 chr6 29713308 29713361 -119803676 + B4 SINE B4 2 55 -237 6 811 265 264 194 0 chr6 29713377 29713449 -119803588 + RSINE1 SINE B4 1 86 -79 6 811 240 234 141 0 chr6 29713498 29713562 -119803475 - RSINE1 SINE B4 -2 163 91 6 811 633 135 171 23 chr6 29713639 29713768 -119803269 - B1_Mus1 SINE Alu 0 148 1 6 811 283 298 73 16 chr6 29713770 29713893 -119803144 - B1F SINE Alu -19 130 1 6 811 452 280 0 39 chr6 29713936 29714040 -119802997 - RSINE1 SINE B4 -65 100 1 6 811 506 119 0 12 chr6 29714047 29714132 -119802905 + (TCCA)n Simple_repeat Simple_repeat 4 87 0 6 811 255 356 30 0 chr6 29714205 29714306 -119802731 - HAL1 LINE L1 -1067 1440 1337 6 811 258 378 0 35 chr6 29714535 29714620 -119802417 - ID4 SINE ID 0 83 2 6 811 535 225 15 52 chr6 29714806 29714942 -119802095 + B1F1 SINE Alu 15 145 -4 6 811 399 295 56 24 chr6 29715104 29715229 -119801808 - B1F1 SINE Alu -11 138 10 6 811 275 167 0 20 chr6 29715266 29715315 -119801722 - ID4_ SINE ID 0 83 36 6 811 263 179 54 0 chr6 29715327 29715383 -119801654 - HAL1 LINE L1 -1618 889 831 6 811 226 227 45 15 chr6 29715427 29715494 -119801543 - HAL1 LINE L1 -1760 747 679 6 811 21 0 0 0 chr6 29716255 29716276 -119800761 + AT_rich Low_complexity Low_complexity 1 21 0 6 811 1602 32 5 0 chr6 29716282 29716467 -119800570 - B2_Mm1a SINE B2 -7 186 1 6 811 545 245 175 0 chr6 29716730 29716873 -119800164 - B3A SINE B2 -30 168 1 6 811 819 149 19 39 chr6 29716933 29717087 -119799950 - B2_Mm2 SINE B2 -34 161 11 6 811 739 89 179 0 chr6 29717120 29717232 -119799805 - B1_Mus1 SINE Alu -16 132 1 6 811 26 30 0 0 chr6 29717468 29717501 -119799536 + AT_rich Low_complexity Low_complexity 1 33 0 6 811 229 284 15 0 chr6 29717507 29717574 -119799463 + B3 SINE B2 4 71 -145 6 811 310 306 17 35 chr6 29717624 29717739 -119799298 - PB1D10 SINE Alu 0 117 5 6 811 338 319 18 12 chr6 29718367 29718535 -119798502 + G-rich Low_complexity Low_complexity 3 171 0 6 811 32 57 0 0 chr6 29718705 29718758 -119798279 + GC_rich Low_complexity Low_complexity 1 53 0 6 811 183 80 0 0 chr6 29720618 29720643 -119796394 + (A)n Simple_repeat Simple_repeat 1 25 0 6 811 523 188 120 0 chr6 29720979 29721096 -119795941 - B1F1 SINE Alu -17 132 2 6 811 953 214 38 6 chr6 29721137 29721320 -119795717 + ID_B1 SINE B4 1 189 -35 6 811 364 256 39 0 chr6 29721323 29721401 -119795636 - PB1D10 SINE Alu -36 81 1 6 811 230 283 50 80 chr6 29721401 29721423 -119795614 - MT2B2 LTR ERVL -345 239 143 6 811 583 225 140 36 chr6 29722460 29722681 -119794356 - MIRb SINE MIR 0 268 25 6 811 325 304 102 15 chr6 29722994 29723131 -119793906 - B1F1 SINE Alu 0 149 1 6 811 1255 142 10 10 chr6 29723287 29723493 -119793544 - B3 SINE B2 -10 206 1 6 811 327 347 104 39 chr6 29723494 29723725 -119793312 - MIRb SINE MIR -17 251 6 7 811 26 0 0 0 chr6 29723855 29723881 -119793156 + AT_rich Low_complexity Low_complexity 1 26 0 7 811 894 68 0 0 chr6 29723881 29723999 -119793038 - B1_Mus2 SINE Alu -2 145 28 7 811 245 290 111 61 chr6 29724055 29724154 -119792883 - RSINE1 SINE B4 -37 128 25 7 811 624 220 111 37 chr6 29724200 29724389 -119792648 - B3 SINE B2 -12 204 2 7 811 393 262 67 19 chr6 29724408 29724513 -119792524 - PB1D10 SINE Alu -7 110 1 7 811 497 285 97 0 chr6 29724776 29724920 -119792117 - RSINE1 SINE B4 -6 159 2 7 811 523 239 67 25 chr6 29725254 29725374 -119791663 + RSINE1 SINE B4 3 127 -38 7 811 510 17 0 0 chr6 29725406 29725465 -119791572 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 811 357 281 171 7 chr6 29725576 29725716 -119791321 - MIRb SINE MIR -10 258 96 7 811 373 343 120 71 chr6 29726348 29726740 -119790297 + L2 LINE L2 1244 1654 -1765 7 811 1302 90 11 0 chr6 29726917 29727094 -119789943 - B2_Mm1t SINE B2 -14 179 1 7 811 492 239 69 50 chr6 29727217 29727380 -119789657 - ID_B1 SINE B4 -48 244 77 7 811 225 0 0 0 chr6 29727388 29727413 -119789624 + (TTGG)n Simple_repeat Simple_repeat 2 26 0 7 811 292 358 18 18 chr6 29727472 29727637 -119789400 + L2 LINE L2 2240 2404 -1015 7 811 228 241 103 0 chr6 29727731 29727789 -119789248 - B3 SINE B2 -104 112 49 7 811 3451 82 14 19 chr6 29727805 29728292 -119788745 - L1Md_F2 LINE L1 0 6582 6098 7 811 3338 44 9 0 chr6 29728293 29728723 -119788314 + L1Md_F2 LINE L1 5589 6022 -560 7 811 218 248 142 106 chr6 29728723 29728791 -119788246 - B3 SINE B2 -99 117 44 7 811 948 77 20 65 chr6 29728791 29728944 -119788093 - B1_Mur4 SINE Alu 0 150 5 7 811 223 199 55 7 chr6 29728944 29728988 -119788049 - B2_Mm2 SINE B2 -173 43 1 7 811 292 253 155 3 chr6 29729060 29729152 -119787885 - ID4_ SINE ID -50 102 1 7 811 1236 34 0 0 chr6 29729305 29729452 -119787585 - B1_Mus2 SINE Alu 0 147 1 7 811 22 0 0 0 chr6 29729652 29729674 -119787363 + AT_rich Low_complexity Low_complexity 1 22 0 7 811 894 232 43 0 chr6 29729786 29729993 -119787044 - B3 SINE B2 0 216 1 7 811 731 237 77 67 chr6 29730075 29730283 -119786754 - B3 SINE B2 -6 210 1 7 811 262 352 99 0 chr6 29730419 29730510 -119786527 - B1F2 SINE Alu -49 100 1 7 811 1005 90 154 0 chr6 29730598 29730754 -119786283 - B2_Mm2 SINE B2 -14 181 2 7 811 233 233 143 55 chr6 29730957 29731048 -119785989 - L2a LINE L2 -6 3420 3322 7 811 1219 41 7 0 chr6 29731502 29731648 -119785389 - B1_Mus2 SINE Alu 0 147 1 7 811 231 253 69 46 chr6 29731680 29731767 -119785270 - PB1D9 SINE Alu -1 119 31 7 811 1171 201 10 0 chr6 29731999 29732208 -119784829 - B3 SINE B2 -5 211 1 7 811 607 263 0 0 chr6 29732707 29732821 -119784216 + B1F SINE Alu 5 118 -31 7 811 499 274 56 16 chr6 29734392 29734518 -119782519 + ID_B1 SINE B4 81 211 -13 7 811 306 279 58 0 chr6 29734613 29734699 -119782338 + PB1D10 SINE Alu 1 91 -26 7 811 654 152 63 70 chr6 29734987 29735129 -119781908 + B1_Mus1 SINE Alu 1 141 -7 7 811 477 257 19 0 chr6 29735176 29735281 -119781756 - ID_B1 SINE B4 0 224 118 7 811 280 83 0 40 chr6 29735357 29735407 -119781630 + B1_Mus2 SINE Alu 100 147 0 7 811 263 321 0 0 chr6 29735416 29735472 -119781565 - ID4_ SINE ID 0 83 28 7 811 1228 28 14 0 chr6 29735517 29735662 -119781375 - B1_Mm SINE Alu 0 147 1 7 811 1309 216 96 68 chr6 29735898 29736446 -119780591 + L1M2 LINE L1 4098 4702 -1441 7 811 222 337 86 11 chr6 29736446 29736539 -119780498 - PB1D9 SINE Alu -17 103 4 7 811 642 280 13 20 chr6 29736539 29736622 -119780415 - ID SINE ID -140 84 3 7 811 565 252 46 26 chr6 29736972 29737123 -119779914 + B3 SINE B2 63 216 0 7 811 236 315 86 103 chr6 29737156 29737393 -119779644 + B4 SINE B4 78 275 -17 7 811 340 329 0 0 chr6 29737530 29737612 -119779425 + ID2 SINE ID 1 82 -1 7 811 600 241 20 34 chr6 29737834 29737980 -119779057 - B1_Mur1 SINE Alu -1 148 5 7 811 437 277 71 71 chr6 29738000 29738198 -119778839 - B3A SINE B2 0 198 1 7 811 1474 38 43 0 chr6 29738300 29738485 -119778552 + B2_Mm1a SINE B2 1 193 0 7 811 240 119 67 17 chr6 29738539 29738599 -119778438 + (TTAAA)n Simple_repeat Simple_repeat 1 63 0 7 811 2594 152 82 14 chr6 29739382 29739472 -119777565 - RLTR24 LTR ERV1 0 529 438 7 811 243 0 0 0 chr6 29739472 29739499 -119777538 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7 811 2594 152 82 14 chr6 29739499 29739895 -119777142 - RLTR24 LTR ERV1 -92 437 11 7 811 200 59 0 29 chr6 29739908 29739943 -119777094 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 811 1069 61 134 41 chr6 29740236 29740407 -119776630 + B2_Mm2 SINE B2 2 188 -7 7 811 986 215 0 6 chr6 29740761 29740939 -119776098 - B3A SINE B2 -21 177 1 7 811 402 21 0 0 chr6 29740963 29741010 -119776027 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 811 23 0 0 0 chr6 29741090 29741113 -119775924 + AT_rich Low_complexity Low_complexity 1 23 0 7 811 1293 92 32 0 chr6 29741135 29741320 -119775717 - B2_Mm2 SINE B2 -3 192 2 7 811 1960 62 0 0 chr6 29741320 29741608 -119775429 - MusHAL1 LINE L1 -642 2070 1783 7 811 843 272 5 10 chr6 29741832 29742036 -119775001 - B3 SINE B2 -12 204 2 7 811 252 0 0 0 chr6 29742637 29742665 -119774372 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 811 249 263 184 0 chr6 29742689 29742765 -119774272 - B1F1 SINE Alu -47 102 13 7 811 200 238 0 0 chr6 29742922 29742964 -119774073 + T-rich Low_complexity Low_complexity 1 42 0 7 811 511 218 69 0 chr6 29742979 29743080 -119773957 - PB1D9 SINE Alu -12 108 1 7 811 256 218 73 0 chr6 29743348 29743403 -119773634 + B1F2 SINE Alu 2 60 -89 7 811 218 232 13 80 chr6 29743403 29743421 -119773616 + ID_B1 SINE B4 88 155 -69 7 811 258 324 71 35 chr6 29743610 29743751 -119773286 - MLT1I LTR MaLR -145 266 121 7 811 1199 61 0 0 chr6 29743883 29744030 -119773007 - B1_Mus2 SINE Alu 0 147 1 7 811 347 76 76 0 chr6 29744032 29744098 -119772939 - B2_Mm1t SINE B2 0 193 123 7 811 221 350 48 10 chr6 29744217 29744321 -119772716 - L2 LINE L2 -945 2474 2367 7 811 314 226 0 0 chr6 29744383 29744436 -119772601 - PB1D9 SINE Alu -67 53 1 7 811 380 319 42 7 chr6 29744641 29744783 -119772254 - RSINE1 SINE B4 -17 148 2 7 811 235 341 0 79 chr6 29745465 29745554 -119771483 + ID4 SINE ID 2 83 0 7 811 2675 112 48 11 chr6 29745572 29746013 -119771024 + Lx3C LINE L1 6518 6974 -2 7 811 470 203 169 0 chr6 29746154 29746272 -119770765 + B1_Mur2 SINE Alu 4 141 -8 7 811 1199 28 14 0 chr6 29746565 29746710 -119770327 - B1_Mus1 SINE Alu 0 148 2 7 811 354 331 158 55 chr6 29746744 29747016 -119770021 + L1ME3A LINE L1 5756 6055 -118 7 811 898 343 70 70 chr6 29747249 29747785 -119769252 + MLT1G3 LTR MaLR 58 595 0 7 811 322 340 31 87 chr6 29747843 29748004 -119769033 + MLT1G3-int LTR MaLR 148 299 -1190 7 811 243 149 20 60 chr6 29748213 29748263 -119768774 + RSINE1 SINE B4 80 127 -38 7 811 216 236 34 0 chr6 29748263 29748352 -119768685 + CT-rich Low_complexity Low_complexity 1 92 0 7 811 23 33 0 0 chr6 29748352 29748382 -119768655 + AT_rich Low_complexity Low_complexity 1 30 0 7 811 304 271 35 12 chr6 29748382 29748468 -119768569 + MLT1G3-int LTR MaLR 266 353 -1056 7 811 515 198 36 9 chr6 29748502 29748614 -119768423 - PB1D10 SINE Alu -2 115 1 7 811 443 239 9 0 chr6 29748622 29748721 -119768316 - B1F SINE Alu -6 114 10 7 811 342 278 95 80 chr6 29748636 29748773 -119768264 - ID_B1 SINE B4 -52 172 34 7 811 316 353 45 91 chr6 29748748 29748969 -119768068 + MLT1G3-int LTR MaLR 398 608 -801 7 811 189 0 0 0 chr6 29749039 29749060 -119767977 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 811 537 121 0 0 chr6 29749060 29749143 -119767894 + (CATA)n Simple_repeat Simple_repeat 2 84 0 7 811 1314 273 65 30 chr6 29749202 29749632 -119767405 + MLT1G3-int LTR MaLR 1043 1487 -2 7 811 317 364 77 28 chr6 29749654 29749835 -119767202 + MLT1G3 LTR MaLR 13 202 -353 7 811 698 208 200 38 chr6 29749838 29750023 -119767014 - B3 SINE B2 0 216 2 7 811 22 0 0 0 chr6 29750025 29750047 -119766990 + AT_rich Low_complexity Low_complexity 1 22 0 7 811 901 182 7 0 chr6 29750047 29750195 -119766842 - B1_Mur2 SINE Alu 0 149 1 7 811 219 36 0 0 chr6 29750200 29750228 -119766809 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 7 811 360 278 111 43 chr6 29750242 29750449 -119766588 + L1MEe LINE L1 2184 2404 -3762 7 811 1278 84 0 55 chr6 29750451 29750653 -119766384 + B2_Mm2 SINE B2 2 192 -3 7 811 22 35 0 0 chr6 29750653 29750682 -119766355 + AT_rich Low_complexity Low_complexity 1 29 0 7 811 236 239 28 148 chr6 29750737 29750751 -119766286 + MT2B2 LTR ERVL 161 251 -329 7 811 322 235 33 56 chr6 29750751 29750841 -119766196 + AluF_3 SINE Alu 146 209 -102 7 811 234 0 0 0 chr6 29750845 29750871 -119766166 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 7 811 329 264 164 8 chr6 29751380 29751502 -119765535 + L1MEe LINE L1 2874 3014 -3132 7 811 362 260 226 13 chr6 29751512 29751738 -119765299 - L1MEc LINE L1 -5349 1051 778 7 811 311 264 166 49 chr6 29751906 29752163 -119764874 - L1MEc LINE L1 -5926 474 146 7 811 342 312 65 17 chr6 29752179 29752298 -119764739 - B1F SINE Alu -4 116 1 7 811 543 198 215 0 chr6 29752448 29752569 -119764468 + B1_Mur1 SINE Alu 1 147 -2 7 811 21 36 0 0 chr6 29752863 29752891 -119764146 + AT_rich Low_complexity Low_complexity 1 28 0 7 101 271 264 315 8 chr6 29753337 29753471 -119763566 + B3 SINE B2 2 176 -40 7 812 711 183 76 0 chr6 29754596 29754727 -119762310 - B1_Mur3 SINE Alu 0 149 9 7 812 605 237 22 30 chr6 29755162 29755297 -119761740 - RSINE1 SINE B4 -29 136 3 7 812 490 262 6 116 chr6 29755710 29755891 -119761146 - RSINE1 SINE B4 -2 163 3 8 812 539 209 45 0 chr6 29755913 29756023 -119761014 - RSINE1 SINE B4 -2 163 49 8 812 494 262 63 7 chr6 29756145 29756267 -119760770 + B3A SINE B2 38 166 -32 8 812 285 75 0 0 chr6 29756267 29756307 -119760730 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 812 494 262 63 7 chr6 29756307 29756326 -119760711 + B3A SINE B2 167 186 -12 8 812 703 134 41 32 chr6 29756634 29756757 -119760280 - B3 SINE B2 -86 130 7 8 812 1107 251 124 66 chr6 29756792 29756870 -119760167 - Lx9 LINE L1 -38 7606 7518 8 812 180 0 0 0 chr6 29756870 29756890 -119760147 + (CATA)n Simple_repeat Simple_repeat 3 22 0 8 812 1107 251 124 66 chr6 29756890 29756911 -119760126 - Lx9 LINE L1 -127 7517 7496 8 812 393 58 0 0 chr6 29756911 29756963 -119760074 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 812 1107 251 124 66 chr6 29756963 29757112 -119759925 - Lx9 LINE L1 -149 7495 7352 8 812 1137 56 21 0 chr6 29757112 29757256 -119759781 - B1_Mus2 SINE Alu 0 147 1 8 812 1107 251 124 66 chr6 29757256 29757535 -119759502 - Lx9 LINE L1 -293 7351 7046 8 812 768 313 36 8 chr6 29757651 29757899 -119759138 + Lx9 LINE L1 6314 6568 -1076 8 812 838 223 38 34 chr6 29757919 29758128 -119758909 - B3 SINE B2 -5 211 2 8 812 1091 196 14 42 chr6 29758151 29758364 -119758673 - B3 SINE B2 0 216 10 8 812 636 87 0 80 chr6 29758908 29759008 -119758029 - B2_Mm2 SINE B2 -102 93 2 8 812 338 258 224 45 chr6 29759010 29759278 -119757759 - L1MC5 LINE L1 -475 7486 7171 8 812 305 209 120 11 chr6 29759313 29759405 -119757632 - L1MC5 LINE L1 -903 7058 6957 8 812 22 35 0 0 chr6 29759726 29759755 -119757282 + AT_rich Low_complexity Low_complexity 1 29 0 8 812 273 298 46 35 chr6 29759772 29759859 -119757178 + PB1 SINE Alu 7 94 -33 8 812 226 224 0 0 chr6 29760081 29760130 -119756907 - ID4 SINE ID -31 52 4 8 812 358 148 0 0 chr6 29760197 29760258 -119756779 - B1_Mur4 SINE Alu 0 150 90 8 812 759 161 0 0 chr6 29760280 29760398 -119756639 - B1_Mur4 SINE Alu -1 149 32 8 812 262 225 68 40 chr6 29760335 29760409 -119756628 - 4.5SRNA scRNA scRNA -6 88 13 8 812 392 229 19 108 chr6 29760431 29760588 -119756449 - MIR SINE MIR -30 232 90 8 812 251 286 50 38 chr6 29760669 29760749 -119756288 - ID4 SINE ID 0 83 3 8 812 258 219 96 0 chr6 29760908 29760981 -119756056 - ID4_ SINE ID -2 81 2 8 812 279 286 61 87 chr6 29760997 29761112 -119755925 - PB1D7 SINE Alu -2 118 7 8 812 695 241 21 0 chr6 29761232 29761377 -119755660 - B1_Mur1 SINE Alu 0 149 2 8 812 1013 202 14 36 chr6 29761395 29761616 -119755421 - B3 SINE B2 0 216 1 8 812 36 53 0 0 chr6 29761643 29761700 -119755337 + AT_rich Low_complexity Low_complexity 1 57 0 8 812 189 107 0 0 chr6 29761904 29761932 -119755105 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 8 812 951 143 0 13 chr6 29761932 29762081 -119754956 - B1_Mus1 SINE Alu -1 147 1 8 812 291 253 107 0 chr6 29762114 29762189 -119754848 - B1F1 SINE Alu -55 94 12 8 812 258 312 170 0 chr6 29762190 29762209 -119754828 + B4 SINE B4 67 197 -95 8 812 370 226 108 0 chr6 29762209 29762302 -119754735 + B1F2 SINE Alu 6 108 -41 8 812 195 42 0 0 chr6 29762660 29762684 -119754353 + (T)n Simple_repeat Simple_repeat 1 24 0 8 812 200 200 58 39 chr6 29763019 29763071 -119753966 - MIR SINE MIR -53 209 157 8 812 347 112 125 0 chr6 29763157 29763237 -119753800 - L1Md_F2 LINE L1 0 6582 6493 8 812 6464 71 5 2 chr6 29763238 29764088 -119752949 - L1_Mus4 LINE L1 -5 6631 5780 8 812 654 152 0 0 chr6 29764089 29764194 -119752843 + L1_Mm LINE L1 5552 5656 -227 8 812 245 262 94 12 chr6 29764196 29764281 -119752756 - MIRc SINE MIR -175 93 2 8 812 189 0 0 0 chr6 29764966 29764987 -119752050 + (CAGAA)n Simple_repeat Simple_repeat 2 22 0 8 812 371 331 14 7 chr6 29765193 29765339 -119751698 + B1F2 SINE Alu 2 148 -1 8 812 576 282 0 7 chr6 29765420 29765563 -119751474 + B1_Mur1 SINE Alu 3 144 -5 8 812 397 244 8 48 chr6 29765752 29765877 -119751160 + PB1D9 SINE Alu 1 120 0 8 812 681 268 85 131 chr6 29765879 29766184 -119750853 + B4A SINE B4 2 292 0 8 812 1486 22 15 66 chr6 29766212 29766410 -119750627 + B2_Mm1a SINE B2 2 189 -4 8 812 2323 69 122 11 chr6 29766573 29766924 -119750113 - RLTR10 LTR ERVK 0 390 1 8 812 407 35 18 0 chr6 29766943 29767000 -119750037 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 8 812 1837 154 55 63 chr6 29767108 29767490 -119749547 - Lx5 LINE L1 -11 7039 6661 8 812 234 0 0 0 chr6 29767645 29767671 -119749366 + (A)n Simple_repeat Simple_repeat 1 26 0 8 812 1196 48 0 0 chr6 29767771 29767916 -119749121 + B1_Mm SINE Alu 1 145 -2 8 812 760 207 0 0 chr6 29768646 29768781 -119748256 + B1_Mur3 SINE Alu 1 135 -14 8 812 278 284 0 15 chr6 29768898 29768966 -119748071 + polypyrimidine Low_complexity Low_complexity 4 70 0 8 812 498 296 80 0 chr6 29769893 29770018 -119747019 + ID_B1 SINE B4 82 216 -8 8 812 466 298 71 28 chr6 29770050 29770261 -119746776 - MER58B DNA MER1_type -35 306 87 8 812 26 30 0 0 chr6 29770356 29770389 -119746648 + AT_rich Low_complexity Low_complexity 1 33 0 8 812 920 186 50 15 chr6 29770392 29770594 -119746443 + B3 SINE B2 1 209 -7 8 812 346 295 167 18 chr6 29770614 29770728 -119746309 + RSINE1 SINE B4 2 132 -33 8 812 627 277 7 20 chr6 29771283 29771434 -119745603 + RSINE1 SINE B4 4 152 -13 8 812 214 296 26 61 chr6 29771833 29771948 -119745089 + L3 LINE CR1 3842 3952 -537 8 812 713 211 0 13 chr6 29772159 29772308 -119744729 - B1_Mur1 SINE Alu -2 147 1 8 812 24 0 0 0 chr6 29772541 29772565 -119744472 + AT_rich Low_complexity Low_complexity 1 24 0 8 812 1396 75 18 1 chr6 29772646 29772865 -119744172 - Lx3C LINE L1 -519 6462 6215 8 812 694 196 41 22 chr6 29772865 29773014 -119744023 + B3 SINE B2 66 216 0 8 812 1408 75 11 0 chr6 29773110 29773298 -119743739 - B2_Mm1t SINE B2 -3 190 1 8 812 213 39 0 0 chr6 29773314 29773340 -119743697 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 8 812 1219 21 0 0 chr6 29773607 29773747 -119743290 + B1_Mus2 SINE Alu 1 140 -7 8 812 408 55 0 0 chr6 29773748 29773803 -119743234 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 8 812 249 351 80 80 chr6 29773805 29774056 -119742981 - LTR16B1 LTR ERVL -80 400 150 8 812 373 296 74 56 chr6 29773961 29774006 -119743031 + CYRA11_Mm Unknown Y-chromosome 127 175 -442 8 812 925 167 45 17 chr6 29774006 29774183 -119742854 - URR1B DNA MER1_type 0 225 44 8 812 1310 167 18 0 chr6 29774243 29774464 -119742573 + URR1B DNA MER1_type 1 225 0 8 812 330 26 0 0 chr6 29774541 29774580 -119742457 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 812 297 51 0 0 chr6 29774580 29774618 -119742419 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 812 401 274 20 0 chr6 29774618 29774720 -119742317 - Tigger7 DNA MER2_type -1887 604 501 8 812 649 175 262 35 chr6 29774900 29774944 -119742093 - B3 SINE B2 -5 211 174 8 812 300 53 0 0 chr6 29774944 29774982 -119742055 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 812 649 175 262 35 chr6 29774982 29775109 -119741928 - B3 SINE B2 -43 173 2 8 812 372 306 152 6 chr6 29775119 29775290 -119741747 + L1M5 LINE L1 5470 5665 -459 8 812 273 211 50 59 chr6 29775344 29775445 -119741592 - MTEa LTR MaLR -8 371 272 8 812 344 279 144 0 chr6 29775648 29775752 -119741285 + RSINE1 SINE B4 14 132 -33 8 812 656 250 134 23 chr6 29775987 29776159 -119740878 + ID_B1 SINE B4 1 191 -33 8 812 811 192 147 18 chr6 29776167 29776337 -119740700 + ID_B1 SINE B4 29 220 -4 8 812 356 264 64 32 chr6 29776364 29776489 -119740548 + B1F SINE Alu 3 131 -18 8 812 213 232 196 0 chr6 29776506 29776562 -119740475 + ID SINE ID 1 67 -157 8 812 247 167 0 20 chr6 29776679 29776728 -119740309 - B3 SINE B2 -4 212 165 8 812 640 233 0 0 chr6 29776725 29776841 -119740196 + B1_Mur1 SINE Alu 34 149 0 8 812 330 222 40 27 chr6 29776906 29776980 -119740057 - HAL1-3A_ME LINE L1 -809 2049 1975 8 812 390 244 0 0 chr6 29777012 29777168 -119739869 + (TG)n Simple_repeat Simple_repeat 1 156 0 8 812 342 0 0 0 chr6 29777798 29777836 -119739201 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 812 21 0 0 0 chr6 29778856 29778877 -119738160 + AT_rich Low_complexity Low_complexity 1 21 0 8 812 1248 295 79 43 chr6 29779141 29779701 -119737336 - MER34A1 LTR ERV1 0 587 8 8 812 310 222 0 0 chr6 29779723 29779769 -119737268 + B1F SINE Alu 1 46 -103 8 812 317 285 0 145 chr6 29779769 29779805 -119737232 + MT2A LTR ERVL 1 30 -503 8 812 1428 166 13 5 chr6 29779805 29780029 -119737008 - URR1A DNA MER1_type 0 226 1 8 812 317 285 0 145 chr6 29780029 29780144 -119736893 + MT2A LTR ERVL 31 130 -403 8 812 445 236 164 44 chr6 29780056 29780266 -119736771 + MTE2b LTR MaLR 35 289 -90 8 812 519 239 17 17 chr6 29780867 29780982 -119736055 + MTE2b LTR MaLR 259 373 -6 8 812 383 272 0 11 chr6 29780989 29781082 -119735955 + B1F SINE Alu 43 134 -15 8 812 373 243 14 0 chr6 29781656 29781730 -119735307 + ID4 SINE ID 2 76 -7 8 812 195 39 0 0 chr6 29781775 29781784 -119735253 + (T)n Simple_repeat Simple_repeat 1 9 0 8 812 1199 49 28 0 chr6 29781784 29781928 -119735109 - B1_Mus1 SINE Alu 0 148 1 8 812 195 39 0 0 chr6 29781928 29781944 -119735093 + (T)n Simple_repeat Simple_repeat 1 16 0 8 812 28 0 0 0 chr6 29782684 29782712 -119734325 + AT_rich Low_complexity Low_complexity 1 28 0 8 812 314 249 69 51 chr6 29783034 29783179 -119733858 - B1F1 SINE Alu 0 149 2 8 812 604 267 153 0 chr6 29783260 29783436 -119733601 - ID_B1 SINE B4 -20 204 2 8 812 302 364 9 26 chr6 29783481 29783594 -119733443 - RSINE1 SINE B4 -14 151 41 9 812 311 302 159 50 chr6 29784075 29784333 -119732704 + L1M5 LINE L1 4809 5094 -1052 9 812 304 306 0 12 chr6 29784557 29784643 -119732394 - PB1D10 SINE Alu -7 110 26 9 812 563 220 75 41 chr6 29784888 29785035 -119732002 + RSINE1 SINE B4 14 165 0 9 812 799 175 0 8 chr6 29785133 29785260 -119731777 - B1_Mur2 SINE Alu -20 129 4 9 812 234 174 65 0 chr6 29785228 29785274 -119731763 - MT2B LTR ERVL -309 292 244 9 812 259 238 46 65 chr6 29785281 29785435 -119731602 + L1M5 LINE L1 5693 5843 -2039 9 812 478 221 161 43 chr6 29785651 29785812 -119731225 + B3A SINE B2 2 181 -17 9 812 256 232 83 0 chr6 29786014 29786097 -119730940 + MIR3 SINE MIR 101 185 -23 9 812 3098 55 44 16 chr6 29786739 29787124 -119729913 + MTA_Mm LTR MaLR 1 396 0 9 812 2798 44 11 5 chr6 29787124 29787492 -119729545 + MTA_Mm-int LTR MaLR 1 370 -728 9 812 309 305 43 58 chr6 29787445 29787584 -119729453 + B4A SINE B4 144 280 -12 9 812 279 281 24 24 chr6 29787582 29787666 -119729371 + B4A SINE B4 191 274 -18 9 812 407 261 339 53 chr6 29787896 29787996 -119729041 - Charlie1 DNA MER1_type -2033 748 643 9 812 968 141 35 0 chr6 29787996 29788138 -119728899 - B1_Mus1 SINE Alu 0 148 2 9 812 415 261 254 48 chr6 29788138 29788580 -119728457 - Charlie1 DNA MER1_type -2139 642 51 9 812 283 340 146 53 chr6 29788751 29788779 -119728258 + Charlie1a DNA MER1_type 8 34 -1421 9 812 207 100 0 0 chr6 29788779 29788809 -119728228 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 812 283 340 146 53 chr6 29788809 29788951 -119728086 + Charlie1a DNA MER1_type 35 194 -1261 9 812 341 167 30 0 chr6 29788984 29789050 -119727987 + B3A SINE B2 1 68 -130 9 812 473 178 45 82 chr6 29789299 29789409 -119727628 - PB1D7 SINE Alu -2 118 13 9 812 349 223 96 10 chr6 29789454 29789558 -119727479 + Charlie1a DNA MER1_type 472 584 -871 9 812 411 234 110 24 chr6 29789776 29789903 -119727134 + B1F SINE Alu 4 141 -8 9 812 379 368 147 8 chr6 29789934 29790309 -119726728 + L2 LINE L2 2430 2856 -563 9 812 338 138 11 111 chr6 29790337 29790427 -119726610 - ID_B1 SINE B4 -23 201 121 9 812 441 259 7 49 chr6 29790429 29790571 -119726466 - ID_B1 SINE B4 -77 147 12 9 812 399 287 52 44 chr6 29790608 29790743 -119726294 - B3A SINE B2 0 198 63 9 812 1565 38 0 57 chr6 29790891 29791085 -119725952 + B2_Mm1t SINE B2 1 183 -10 9 812 358 344 72 13 chr6 29791211 29791364 -119725673 - RSINE1 SINE B4 -3 162 1 9 812 207 0 0 0 chr6 29791376 29791399 -119725638 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 812 239 307 122 67 chr6 29791494 29791658 -119725379 + MT2B LTR ERVL 88 260 -341 9 812 472 286 75 0 chr6 29791561 29791694 -119725343 + ID_B1 SINE B4 80 222 -2 9 812 1767 202 56 14 chr6 29793017 29793374 -119723663 - ORR1D1 LTR MaLR 0 374 3 9 812 743 227 296 3 chr6 29793375 29793690 -119723347 - MTD LTR MaLR -12 407 1 9 812 1532 234 154 70 chr6 29793690 29793793 -119723244 - MTD-int LTR MaLR 0 1258 1145 9 812 1114 88 7 7 chr6 29793793 29793941 -119723096 + B1_Mus1 SINE Alu 1 148 0 9 812 1532 234 154 70 chr6 29793941 29794448 -119722589 - MTD-int LTR MaLR -114 1144 598 9 812 690 219 191 0 chr6 29794489 29794631 -119722406 + B3 SINE B2 1 170 -46 9 812 450 0 0 0 chr6 29794631 29794681 -119722356 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 812 690 219 191 0 chr6 29794681 29794716 -119722321 + B3 SINE B2 171 211 -5 9 812 234 217 28 28 chr6 29794758 29794829 -119722208 - MER82 DNA MER2_type -408 245 175 9 812 292 239 239 0 chr6 29794928 29795037 -119722000 - MER82 DNA MER2_type -473 180 46 9 812 790 157 52 7 chr6 29795081 29795216 -119721821 - B1_Mus1 SINE Alu -1 147 7 9 812 452 255 39 70 chr6 29795216 29795237 -119721800 - ID_B1 SINE B4 -2 222 72 9 812 402 210 12 36 chr6 29795394 29795478 -119721559 - ID4 SINE ID 0 83 2 9 812 722 143 85 23 chr6 29795520 29795649 -119721388 + B1_Mur4 SINE Alu 12 148 -2 9 812 24 53 0 0 chr6 29796406 29796444 -119720593 + AT_rich Low_complexity Low_complexity 1 38 0 9 812 658 245 200 0 chr6 29796616 29796861 -119720176 + MER2 DNA MER2_type 30 323 -22 9 812 252 295 68 51 chr6 29796963 29797081 -119719956 + PB1D9 SINE Alu 1 120 0 9 812 779 133 14 43 chr6 29797361 29797502 -119719535 - B1_Mur4 SINE Alu 0 150 14 9 812 469 245 25 70 chr6 29797502 29797519 -119719518 - ID_B1 SINE B4 0 224 74 9 812 333 296 0 69 chr6 29798271 29798358 -119718679 - RSINE1 SINE B4 -1 164 84 9 812 272 235 192 10 chr6 29798673 29798772 -119718265 - PB1D10 SINE Alu 0 117 1 9 812 465 292 6 75 chr6 29798804 29798820 -119718217 - RSINE1 SINE B4 -2 163 148 9 812 276 53 0 0 chr6 29798820 29798858 -119718179 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 812 465 292 6 75 chr6 29798858 29799015 -119718022 - RSINE1 SINE B4 -18 147 2 9 812 268 206 154 16 chr6 29799059 29799182 -119717855 - MIR SINE MIR -118 150 28 9 812 932 235 46 0 chr6 29799242 29799438 -119717599 + B3 SINE B2 2 206 -10 9 812 210 322 61 40 chr6 29799451 29799579 -119717458 - MIRc SINE MIR -90 178 46 9 812 225 262 85 24 chr6 29799703 29799785 -119717252 - MTE2a LTR MaLR -15 364 278 9 812 823 182 13 40 chr6 29802136 29802285 -119714752 - B1_Mur1 SINE Alu -3 146 2 9 812 279 356 8 73 chr6 29802422 29802438 -119714599 - PB1D10 SINE Alu 0 117 6 9 812 440 270 10 39 chr6 29802438 29802542 -119714495 - ID_B1 SINE B4 -37 187 87 9 812 192 200 0 0 chr6 29802556 29802596 -119714441 + CT-rich Low_complexity Low_complexity 2 41 0 9 812 1357 92 38 0 chr6 29802602 29802786 -119714251 - B2_Mm1t SINE B2 -1 192 2 9 812 389 230 0 0 chr6 29802794 29802868 -119714169 - PB1D9 SINE Alu -6 114 41 9 812 360 59 0 0 chr6 29802943 29802994 -119714043 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 9 812 618 257 6 57 chr6 29804684 29804841 -119712196 + ID_B1 SINE B4 75 223 -1 9 812 358 200 31 0 chr6 29804899 29804964 -119712073 - RSINE1 SINE B4 -13 152 86 9 812 841 242 0 78 chr6 29805354 29805547 -119711490 - B3A SINE B2 -18 180 3 9 812 236 65 87 0 chr6 29807374 29807420 -119709617 - L1_Mus4 LINE L1 -4 6632 6583 9 812 1120 219 52 15 chr6 29807445 29807714 -119709323 - B4 SINE B4 0 292 14 9 812 432 260 54 23 chr6 29807820 29807950 -119709087 + RSINE1 SINE B4 3 136 -29 9 812 263 177 16 0 chr6 29808144 29808206 -119708831 + CT-rich Low_complexity Low_complexity 3 65 0 9 812 600 295 45 66 chr6 29808523 29808810 -119708227 - B4A SINE B4 -9 283 3 9 812 234 196 0 21 chr6 29808974 29809021 -119708016 + B1F SINE Alu 101 146 -3 9 812 333 0 0 0 chr6 29811191 29811228 -119705809 + (TTG)n Simple_repeat Simple_repeat 1 37 0 9 812 216 0 0 0 chr6 29812277 29812301 -119704736 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 9 812 345 318 9 26 chr6 29812303 29812416 -119704621 - PB1D7 SINE Alu -7 113 3 9 812 590 257 173 0 chr6 29812477 29812656 -119704381 - ID_B1 SINE B4 -14 210 1 9 812 1774 134 255 3 chr6 29812785 29813091 -119703946 + ORR1C2 LTR MaLR 2 384 0 9 812 1000 140 14 0 chr6 29814150 29814293 -119702744 - B1_Mur4 SINE Alu -2 148 4 9 812 2067 161 88 13 chr6 29814941 29815325 -119701712 + MTC LTR MaLR 1 413 -8 9 812 193 282 125 14 chr6 29815446 29815518 -119701519 + L2a LINE L2 3336 3415 -11 9 812 213 206 15 45 chr6 29816652 29816718 -119700319 + (CATG)n Simple_repeat Simple_repeat 3 66 0 9 812 254 191 0 0 chr6 29817023 29817065 -119699972 - tRNA-Gly-GGA tRNA tRNA -33 42 1 9 812 325 304 29 0 chr6 29817134 29817234 -119699803 + B1F SINE Alu 38 148 -1 9 812 327 306 41 68 chr6 29817475 29817490 -119699547 + ID_B1 SINE B4 78 219 -4 9 812 630 225 61 15 chr6 29817490 29817621 -119699416 + B1_Mur2 SINE Alu 8 144 -5 9 812 1710 37 0 0 chr6 29817625 29817815 -119699222 + B2_Mm1a SINE B2 2 191 -2 9 812 268 280 31 123 chr6 29817892 29818055 -119698982 + B4A SINE B4 73 220 -72 9 812 735 178 0 15 chr6 29817932 29818063 -119698974 + B1_Mur2 SINE Alu 20 148 -1 9 812 571 172 122 8 chr6 29819145 29819268 -119697769 + URR1B DNA MER1_type 1 137 -88 9 812 3598 63 40 0 chr6 29819268 29819745 -119697292 - LTRIS2 LTR ERV1 0 564 69 9 812 585 120 11 0 chr6 29819758 29819850 -119697187 + URR1B DNA MER1_type 133 225 0 9 812 217 229 0 0 chr6 29820186 29820234 -119696803 + G-rich Low_complexity Low_complexity 5 52 0 9 812 466 294 9 0 chr6 29820825 29820934 -119696103 - PB1D7 SINE Alu -6 114 5 9 812 282 265 0 136 chr6 29820828 29820946 -119696091 - MT2B2 LTR ERVL -326 258 157 9 812 397 304 113 5 chr6 29821310 29821495 -119695542 - MIRb SINE MIR 0 268 64 9 812 239 311 92 26 chr6 29821841 29821993 -119695044 - MLT1L LTR MaLR -327 283 122 9 812 420 255 72 15 chr6 29821992 29822187 -119694850 - MER20B DNA MER1_type -29 754 549 9 812 569 247 259 0 chr6 29822229 29822395 -119694642 - B3 SINE B2 -7 209 1 9 812 1279 48 7 0 chr6 29822431 29822577 -119694460 - B1_Mus2 SINE Alu 0 147 1 9 812 519 286 50 7 chr6 29822583 29822724 -119694313 - ID_B1 SINE B4 -1 223 77 9 812 363 319 109 49 chr6 29822751 29823035 -119694002 - MER20B DNA MER1_type -370 413 113 9 812 615 258 8 0 chr6 29823228 29823352 -119693685 - ID_B1 SINE B4 0 224 100 9 812 515 260 49 84 chr6 29823233 29823376 -119693661 - B1F1 SINE Alu -5 144 7 9 812 372 22 0 0 chr6 29823434 29823479 -119693558 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 812 877 259 53 76 chr6 29823480 29823539 -119693498 - B4A SINE B4 -22 270 205 9 812 1106 93 0 0 chr6 29823539 29823672 -119693365 + B1_Mus1 SINE Alu 3 135 -13 9 812 211 28 27 27 chr6 29823672 29823709 -119693328 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 9 812 877 259 53 76 chr6 29823715 29823918 -119693119 - B4A SINE B4 -88 204 14 9 812 524 262 21 134 chr6 29823935 29824129 -119692908 - ID_B1 SINE B4 -49 175 4 9 812 855 244 21 69 chr6 29824640 29824873 -119692164 + ID_B1 SINE B4 2 223 -1 1 812 731 230 14 14 chr6 29824992 29825133 -119691904 + B3A SINE B2 1 141 -57 1 812 220 296 40 40 chr6 29825101 29825175 -119691862 - RSINE1 SINE B4 -90 75 2 1 812 390 269 86 43 chr6 29825179 29825319 -119691718 - B1F SINE Alu 0 149 4 1 812 225 269 68 25 chr6 29825408 29825526 -119691511 - L1MC4 LINE L1 -985 7057 6935 1 812 1040 217 57 96 chr6 29825605 29825906 -119691131 - B4A SINE B4 -2 290 2 1 812 613 239 181 65 chr6 29825930 29826190 -119690847 - B4 SINE B4 0 292 3 1 812 298 281 40 90 chr6 29826380 29826603 -119690434 - L1MCc LINE L1 -5023 2014 1803 1 812 261 0 0 0 chr6 29826677 29826706 -119690331 + (T)n Simple_repeat Simple_repeat 1 29 0 1 812 669 290 60 30 chr6 29826829 29827028 -119690009 - ID_B1 SINE B4 0 224 20 1 812 304 294 162 73 chr6 29827111 29827426 -119689611 - L1MCc LINE L1 -5277 1146 804 1 812 467 286 63 58 chr6 29827687 29827910 -119689127 - L1MCc LINE L1 -5992 431 208 1 812 712 233 139 0 chr6 29827920 29828100 -119688937 - ID_B1 SINE B4 -16 208 4 1 812 22 94 0 0 chr6 29829236 29829300 -119687737 + AT_rich Low_complexity Low_complexity 1 64 0 1 812 326 291 126 9 chr6 29829483 29829594 -119687443 + PB1 SINE Alu 2 125 -2 1 812 374 278 31 0 chr6 29829820 29829917 -119687120 + PB1D7 SINE Alu 13 112 -8 1 812 302 67 22 0 chr6 29829925 29829970 -119687067 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 1 812 299 295 25 37 chr6 29829975 29830056 -119686981 + ID4 SINE ID 2 81 -2 1 812 330 299 26 0 chr6 29830834 29830911 -119686126 + PB1D10 SINE Alu 1 79 -38 1 812 341 250 13 0 chr6 29831246 29831322 -119685715 + BC1_Mm scRNA scRNA 15 91 -61 1 812 558 236 39 47 chr6 29832117 29832246 -119684791 + ID_B1 SINE B4 7 134 -90 1 812 753 278 54 8 chr6 29832253 29832522 -119684515 + B4A SINE B4 3 272 -20 1 812 295 254 46 0 chr6 29833972 29834072 -119682965 - L2a LINE L2 -3 3423 3266 1 812 1122 50 0 0 chr6 29834168 29834302 -119682735 + B1_Mus1 SINE Alu 3 136 -12 1 812 180 0 0 0 chr6 29834302 29834322 -119682715 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 812 926 163 190 6 chr6 29834420 29834599 -119682438 + B3 SINE B2 1 212 -4 1 812 385 320 49 49 chr6 29834665 29834829 -119682208 - RSINE1 SINE B4 0 165 2 1 812 414 0 0 0 chr6 29835038 29835084 -119681953 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 812 318 291 90 41 chr6 29835087 29835209 -119681828 - B3A SINE B2 -70 128 1 1 812 23 54 0 0 chr6 29835220 29835257 -119681780 + AT_rich Low_complexity Low_complexity 1 37 0 1 812 763 241 45 10 chr6 29835260 29835461 -119681576 + B3 SINE B2 3 210 -6 1 812 538 165 113 0 chr6 29835495 29835592 -119681445 + PB1D9 SINE Alu 5 112 -8 1 812 1582 45 0 10 chr6 29835672 29835874 -119681163 + L1Md_A LINE L1 6383 6582 0 1 812 908 178 97 20 chr6 29836418 29836613 -119680424 + B3 SINE B2 1 210 -6 1 812 1582 68 40 0 chr6 29836635 29836857 -119680180 + L1_Mus3 LINE L1 6408 6638 0 1 812 245 280 111 45 chr6 29837746 29837910 -119679127 + MIRc SINE MIR 6 180 -88 1 812 275 316 114 0 chr6 29838020 29838134 -119678903 - B1F1 SINE Alu -21 128 2 1 812 615 271 33 14 chr6 29838747 29838963 -119678074 + ID_B1 SINE B4 1 224 -68 1 812 754 268 201 31 chr6 29839070 29839394 -119677643 - MTEb LTR MaLR 0 379 1 1 812 245 265 14 14 chr6 29841641 29841710 -119675327 + RSINE1 SINE B4 97 165 0 1 812 219 88 0 0 chr6 29841725 29841759 -119675278 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 812 320 272 80 14 chr6 29841787 29841906 -119675131 + PB1D7 SINE Alu 14 136 -14 1 812 242 259 103 0 chr6 29841919 29841977 -119675060 + tRNA-Ala-GCY_ tRNA tRNA 3 66 -9 1 812 344 247 13 0 chr6 29842029 29842106 -119674931 + L1MC4 LINE L1 7450 7527 -515 1 812 709 192 15 0 chr6 29842231 29842361 -119674676 + B1_Mur1 SINE Alu 10 141 -8 1 812 206 0 0 65 chr6 29843097 29843128 -119673909 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 812 1054 30 0 0 chr6 29843315 29843450 -119673587 + B1_Mm SINE Alu 13 147 0 1 812 268 306 104 61 chr6 29843642 29843757 -119673280 + PB1D7 SINE Alu 1 120 0 1 812 230 205 0 0 chr6 29844239 29844278 -119672759 + ID4_ SINE ID 44 82 -1 1 812 481 238 38 0 chr6 29844575 29844680 -119672357 + PB1D10 SINE Alu 2 110 -7 1 812 326 273 63 195 chr6 29844999 29845090 -119671947 + B4A SINE B4 1 80 -212 1 812 971 217 50 0 chr6 29845090 29845288 -119671749 + B3 SINE B2 3 210 -6 1 812 326 273 63 195 chr6 29845288 29845302 -119671735 + B4A SINE B4 81 85 -207 1 812 245 305 0 0 chr6 29845302 29845361 -119671676 + B1_Mus2 SINE Alu 1 59 -88 1 812 828 269 69 45 chr6 29845425 29846008 -119671029 - L1M4 LINE L1 -586 5598 4994 1 812 221 94 36 36 chr6 29846193 29846248 -119670789 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 1 812 305 222 42 0 chr6 29847296 29847368 -119669669 + ID4_ SINE ID 3 77 -6 1 812 1020 129 0 20 chr6 29847810 29847960 -119669077 + B1_Mus2 SINE Alu 1 147 0 1 812 324 304 223 14 chr6 29848066 29848602 -119668435 - L2a LINE L2 -5 3421 2770 1 812 267 231 30 15 chr6 29848799 29848865 -119668172 + PB1D9 SINE Alu 53 119 -1 1 812 564 253 31 43 chr6 29849346 29849507 -119667530 + RSINE1 SINE B4 3 161 -4 1 812 202 352 206 9 chr6 29849583 29849913 -119667124 - L2 LINE L2 -454 2965 2571 1 812 309 184 87 58 chr6 29850156 29850260 -119666777 + B1F SINE Alu 27 133 -16 1 812 264 338 0 0 chr6 29851510 29851578 -119665459 - ID4 SINE ID -4 79 12 1 812 201 196 0 0 chr6 29851629 29851675 -119665362 + CT-rich Low_complexity Low_complexity 2 47 0 1 812 257 217 0 0 chr6 29851791 29851837 -119665200 - ID_B1 SINE B4 -98 126 81 1 812 184 262 65 97 chr6 29852150 29852243 -119664794 - L2c LINE L2 -15 3372 3283 1 812 294 250 16 132 chr6 29852852 29852981 -119664056 + L2c LINE L2 3268 3381 -6 1 812 354 207 0 109 chr6 29853817 29853909 -119663128 - ID4_ SINE ID -1 82 1 1 812 499 152 179 0 chr6 29853956 29854068 -119662969 - RSINE1 SINE B4 -31 134 3 1 812 636 238 338 12 chr6 29854979 29855399 -119661638 + L1MA6 LINE L1 5340 5896 -404 1 812 368 300 17 2 chr6 29855447 29855590 -119661447 + PB1D10 SINE Alu 2 148 0 1 812 383 235 0 24 chr6 29855746 29855829 -119661208 + PB1D10 SINE Alu 26 106 -11 1 812 279 0 0 0 chr6 29855830 29855861 -119661176 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 812 393 260 200 39 chr6 29855861 29856141 -119660896 + L1MA6 LINE L1 5973 6297 -3 1 812 759 173 0 16 chr6 29856175 29856304 -119660733 + B1_Mur3 SINE Alu 10 136 -13 1 812 753 85 0 0 chr6 29856305 29856411 -119660626 + (GGGA)n Simple_repeat Simple_repeat 4 109 0 1 812 263 236 200 11 chr6 29857031 29857121 -119659916 - PB1D10 SINE Alu -9 108 2 1 812 687 209 65 0 chr6 29857459 29857598 -119659439 + B1_Mur3 SINE Alu 2 149 0 1 812 1148 75 0 0 chr6 29857636 29857783 -119659254 + B1_Mus2 SINE Alu 1 147 0 1 812 236 21 39 59 chr6 29857783 29857834 -119659203 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 1 812 396 267 81 7 chr6 29858745 29858881 -119658156 - RSINE1 SINE B4 -17 148 3 1 812 362 175 16 0 chr6 29860102 29860165 -119656872 + ID4 SINE ID 2 65 -18 1 812 449 188 73 12 chr6 29860994 29861127 -119655910 - PB1D7 SINE Alu 0 149 2 1 812 263 261 0 42 chr6 29861457 29861529 -119655508 + ID4 SINE ID 9 77 -6 1 812 303 267 18 73 chr6 29862760 29862869 -119654168 + B3 SINE B2 35 137 -79 1 812 26 0 0 0 chr6 29862883 29862909 -119654128 + AT_rich Low_complexity Low_complexity 1 26 0 1 812 595 215 34 56 chr6 29863275 29863485 -119653552 - B3A SINE B2 0 216 1 1 812 587 297 71 5 chr6 29864308 29864504 -119652533 + MER20 DNA MER1_type 11 219 0 1 812 624 211 58 3 chr6 29864530 29864677 -119652360 + ID_B1 SINE B4 69 222 -2 1 812 616 70 0 0 chr6 29864704 29864790 -119652247 + BC1_Mm scRNA scRNA 1 86 -66 1 812 666 200 206 0 chr6 29864979 29865149 -119651888 + B3 SINE B2 1 205 -11 1 812 439 202 184 0 chr6 29865193 29865302 -119651735 + B1F SINE Alu 16 144 -5 1 812 750 216 0 30 chr6 29865474 29865641 -119651396 + MTD LTR MaLR 1 162 -257 1 812 468 184 110 0 chr6 29865679 29865788 -119651249 + MTD LTR MaLR 291 411 -8 1 812 190 257 92 73 chr6 29865877 29865986 -119651051 + MIRb SINE MIR 117 227 -41 1 812 397 189 10 87 chr6 29866235 29866339 -119650698 - RSINE1 SINE B4 -28 137 42 1 812 407 261 81 11 chr6 29868044 29868158 -119648879 - ID_B1 SINE B4 -30 194 81 1 812 351 219 41 0 chr6 29868186 29868259 -119648778 + ID4 SINE ID 7 82 -1 1 812 211 219 0 0 chr6 29868402 29868443 -119648594 + MIR SINE MIR 70 110 -152 1 812 269 281 42 42 chr6 29868991 29869114 -119647923 - L2a LINE L2 -56 3370 3197 1 812 531 0 0 0 chr6 29869527 29869586 -119647451 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 1 812 279 283 32 11 chr6 29869593 29869686 -119647351 - MIR SINE MIR -49 213 119 1 812 487 311 147 44 chr6 29869707 29870047 -119646990 - MER21B LTR ERV1 -124 739 365 1 812 922 160 0 7 chr6 29870072 29870217 -119646820 - B1_Mm SINE Alu 0 147 4 1 812 257 250 139 0 chr6 29870321 29870393 -119646644 - B4 SINE B4 -4 288 207 1 812 929 164 215 0 chr6 29871606 29871783 -119645254 - B3 SINE B2 0 216 2 1 812 569 292 6 36 chr6 29871862 29872029 -119645008 + RSINE1 SINE B4 4 165 0 1 812 522 315 99 9 chr6 29872139 29872482 -119644555 + L1ME3B LINE L1 5568 5941 -299 1 812 337 215 28 15 chr6 29872517 29872648 -119644389 - B3 SINE B2 0 216 47 1 812 186 191 0 0 chr6 29872951 29872993 -119644044 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 812 405 0 0 0 chr6 29873433 29873478 -119643559 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 812 348 229 27 0 chr6 29874767 29874858 -119642179 + ID4_ SINE ID 2 94 -58 1 812 357 214 66 33 chr6 29875998 29876119 -119640918 + LTR16C LTR ERVL 349 473 -16 1 812 501 199 237 0 chr6 29876167 29876319 -119640718 + B3 SINE B2 29 216 0 1 812 213 65 0 0 chr6 29877789 29877820 -119639217 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 812 315 0 0 0 chr6 29878063 29878098 -119638939 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 812 241 309 0 0 chr6 29878518 29878586 -119638451 - L1MEg2 LINE L1 -5550 902 835 1 812 349 271 84 0 chr6 29879155 29879262 -119637775 + PB1D10 SINE Alu 2 117 0 1 812 360 221 223 19 chr6 29879573 29879730 -119637307 - Lx9 LINE L1 -8 7636 7448 1 812 189 0 0 0 chr6 29880526 29880547 -119636490 + (T)n Simple_repeat Simple_repeat 1 21 0 1 812 582 211 43 37 chr6 29880554 29880716 -119636321 - L1ME4a LINE L1 -1 6123 5961 1 812 1180 48 0 26 chr6 29881534 29881685 -119635352 - B1_Mus1 SINE Alu 0 148 2 1 812 993 112 33 0 chr6 29883223 29883375 -119633662 + B2_Mm2 SINE B2 2 158 -37 1 812 180 0 0 0 chr6 29883376 29883396 -119633641 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1 812 988 25 107 0 chr6 29883405 29883527 -119633510 + B1_Mus1 SINE Alu 1 135 -13 1 101 664 307 116 37 chr6 29884281 29884817 -119632220 - L2 LINE L2 -966 2453 1869 1 813 1353 87 16 0 chr6 29884817 29885000 -119632037 + B2_Mm2 SINE B2 1 186 -9 1 813 664 307 116 37 chr6 29885000 29885059 -119631978 - L2 LINE L2 -1551 1868 1811 1 813 346 281 62 0 chr6 29885073 29885201 -119631836 + B1_Mus1 SINE Alu 8 143 -5 1 813 509 230 18 0 chr6 29885090 29885203 -119631834 + ID_B1 SINE B4 107 221 -3 1 813 575 139 10 0 chr6 29885205 29885306 -119631731 + (GA)n Simple_repeat Simple_repeat 1 102 0 1 813 357 43 0 0 chr6 29885308 29885355 -119631682 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 1 813 326 244 12 0 chr6 29885443 29885525 -119631512 + B2_Mm2 SINE B2 3 85 -110 1 813 2936 131 30 8 chr6 29885538 29886037 -119631000 - RLTR28 LTR ERVL -14 510 1 1 813 310 89 398 10 chr6 29886107 29886210 -119630827 - B2_Mm2 SINE B2 -6 189 47 1 813 1226 119 11 0 chr6 29886251 29886428 -119630609 - B2_Mm1t SINE B2 -13 180 2 1 813 21 0 0 0 chr6 29886467 29886488 -119630549 + AT_rich Low_complexity Low_complexity 1 21 0 1 813 351 0 0 0 chr6 29887191 29887230 -119629807 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 813 241 326 108 23 chr6 29887336 29887512 -119629525 - MIR3 SINE MIR -11 197 7 1 813 1276 97 43 0 chr6 29888168 29888353 -119628684 + B2_Mm2 SINE B2 2 194 -1 1 813 468 0 0 0 chr6 29888904 29888956 -119628081 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 813 194 322 77 89 chr6 29889639 29889874 -119627163 - L2c LINE L2 -245 3142 2911 1 813 630 122 55 18 chr6 29890042 29890151 -119626886 - B1_Mur2 SINE Alu 0 149 37 1 813 1197 55 0 0 chr6 29891570 29891716 -119625321 - B1_Mus2 SINE Alu 0 147 2 1 813 1487 93 0 0 chr6 29892038 29892232 -119624805 - B2_Mm2 SINE B2 0 195 2 1 813 520 273 79 0 chr6 29892291 29892430 -119624607 - RSINE1 SINE B4 -13 152 3 1 813 3116 78 16 7 chr6 29892684 29893124 -119623913 - L1_Mus3 LINE L1 0 6638 6195 1 813 844 285 19 5 chr6 29893272 29893480 -119623557 + B4A SINE B4 11 221 -71 1 813 795 153 22 0 chr6 29893481 29893618 -119623419 - ORR1B1 LTR MaLR -9 385 246 1 813 351 0 0 0 chr6 29894811 29894850 -119622187 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 813 829 182 0 7 chr6 29895568 29895717 -119621320 - B1_Mur2 SINE Alu 0 149 2 1 813 401 291 32 108 chr6 29895575 29895733 -119621304 - B4 SINE B4 -72 220 75 1 813 702 216 133 16 chr6 29895776 29895964 -119621073 + B3 SINE B2 1 210 -6 1 813 1093 72 0 0 chr6 29896067 29896206 -119620831 + B1_Mus2 SINE Alu 2 140 -7 1 813 444 19 0 0 chr6 29896316 29896369 -119620668 + (TATG)n Simple_repeat Simple_repeat 4 56 0 1 813 787 207 0 0 chr6 29896378 29896523 -119620514 - RSINE1 SINE B4 -19 146 2 1 813 395 257 72 22 chr6 29897592 29897731 -119619306 - B1F2 SINE Alu -2 147 2 1 813 1165 205 133 0 chr6 29897880 29898158 -119618879 - MTE2b LTR MaLR -64 315 1 1 813 572 178 25 33 chr6 29898709 29898831 -119618206 + RSINE1 SINE B4 2 122 -43 1 813 201 162 0 0 chr6 29898834 29898871 -119618166 + CT-rich Low_complexity Low_complexity 1 37 0 1 813 214 115 0 37 chr6 29898907 29898961 -119618076 + T-rich Low_complexity Low_complexity 3 54 0 1 813 579 297 0 0 chr6 29898965 29899110 -119617927 + B1F1 SINE Alu 5 149 0 1 813 618 227 85 6 chr6 29900016 29900180 -119616857 + B3 SINE B2 2 178 -38 1 813 1116 88 0 0 chr6 29900193 29900340 -119616697 + B1_Mus1 SINE Alu 2 148 0 1 813 372 94 0 0 chr6 29900343 29900396 -119616641 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 813 188 35 35 0 chr6 29900966 29900995 -119616042 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 813 216 260 110 0 chr6 29901129 29901202 -119615835 - ID4 SINE ID -1 82 2 1 813 396 0 0 0 chr6 29901225 29901269 -119615768 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 813 313 284 268 0 chr6 29901269 29901396 -119615641 - RSINE1 SINE B4 -3 162 2 1 813 429 165 243 0 chr6 29901401 29901504 -119615533 - B1F2 SINE Alu -5 144 17 1 813 268 230 29 29 chr6 29901504 29901607 -119615430 + (TA)n Simple_repeat Simple_repeat 2 104 0 1 813 522 0 0 0 chr6 29901704 29901762 -119615275 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 1 813 887 134 15 0 chr6 29901762 29901896 -119615141 - B1_Mur4 SINE Alu -12 138 3 1 813 661 238 23 121 chr6 29901919 29902134 -119614903 + B3A SINE B2 2 195 0 1 813 329 250 9 103 chr6 29902156 29902263 -119614774 + RSINE1 SINE B4 36 132 -33 1 813 23 0 0 0 chr6 29902263 29902286 -119614751 + AT_rich Low_complexity Low_complexity 1 23 0 1 813 942 209 156 12 chr6 29902342 29902599 -119614438 - MTE2b LTR MaLR -8 371 78 1 813 878 147 22 0 chr6 29902893 29903029 -119614008 + B1_Mur4 SINE Alu 2 140 -10 1 813 488 316 46 14 chr6 29903690 29903908 -119613129 + L1MC4a LINE L1 5655 5879 -2003 1 813 433 158 0 12 chr6 29903912 29903995 -119613042 + B1_Mur3 SINE Alu 21 102 -47 1 813 749 272 5 25 chr6 29904006 29904202 -119612835 + B3A SINE B2 1 192 -6 1 813 24 0 0 0 chr6 29904241 29904265 -119612772 + AT_rich Low_complexity Low_complexity 1 24 0 1 813 310 268 213 0 chr6 29904296 29904423 -119612614 + RSINE1 SINE B4 3 156 -9 1 813 592 164 213 0 chr6 29904499 29904621 -119612416 + B1_Mur4 SINE Alu 3 150 0 1 813 35 0 0 0 chr6 29904686 29904721 -119612316 + AT_rich Low_complexity Low_complexity 1 35 0 1 813 1021 209 36 0 chr6 29904730 29904926 -119612111 - B3 SINE B2 -9 207 5 1 813 255 310 125 11 chr6 29904961 29905049 -119611988 - PB1D10 SINE Alu -19 98 1 1 813 441 0 0 0 chr6 29905052 29905101 -119611936 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 813 613 295 18 0 chr6 29905657 29905823 -119611214 - B4A SINE B4 -79 213 45 1 813 945 162 7 7 chr6 29905908 29906057 -119610980 - B1_Mur2 SINE Alu 0 149 1 1 813 1174 57 6 0 chr6 29906167 29906326 -119610711 + B2_Mm1a SINE B2 1 160 -33 1 813 327 78 0 0 chr6 29906326 29906377 -119610660 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 1 813 1110 120 0 28 chr6 29906377 29906397 -119610640 + B2_Mm2 SINE B2 159 175 -20 1 813 401 264 53 23 chr6 29908366 29908498 -119608539 - B1F2 SINE Alu -12 137 2 1 813 258 239 165 52 chr6 29910071 29910186 -119606851 - MLT1J-int LTR MaLR -3 1384 1257 1 813 243 0 0 0 chr6 29910209 29910236 -119606801 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 813 342 0 0 0 chr6 29910236 29910273 -119606764 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 813 602 117 19 19 chr6 29910419 29910524 -119606513 - PB1D9 SINE Alu -7 113 9 1 813 240 167 62 0 chr6 29910608 29910656 -119606381 - PB1D7 SINE Alu -2 118 68 1 813 376 224 13 0 chr6 29910613 29910689 -119606348 - ID_B1 SINE B4 -7 217 141 1 813 341 206 0 14 chr6 29910834 29910908 -119606129 + PB1D10 SINE Alu 42 114 -3 1 813 312 48 0 0 chr6 29912965 29913007 -119604030 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1 813 673 200 7 20 chr6 29913116 29913264 -119603773 + B1F1 SINE Alu 4 149 0 1 813 482 243 6 17 chr6 29913285 29913465 -119603572 + GA-rich Low_complexity Low_complexity 1 178 0 1 813 817 104 0 0 chr6 29913555 29913661 -119603376 + U6 snRNA snRNA 2 107 0 1 813 1199 49 0 0 chr6 29913998 29914140 -119602897 + B1_Mus1 SINE Alu 1 142 -6 1 813 1106 62 38 0 chr6 29914153 29914313 -119602724 + B2_Mm2 SINE B2 27 192 -3 1 813 566 147 0 10 chr6 29914393 29914496 -119602541 + PB1D9 SINE Alu 18 119 -1 1 813 509 143 33 0 chr6 29916081 29916172 -119600865 - PB1D9 SINE Alu 0 120 27 1 813 313 189 116 54 chr6 29916745 29916874 -119600163 + MLT1A0 LTR MaLR 1 137 -228 1 813 4964 83 12 23 chr6 29916877 29917279 -119599758 + MusHAL1 LINE L1 1370 1775 -937 1 813 1144 72 132 0 chr6 29917279 29917445 -119599592 + B2_Mm2 SINE B2 2 189 -6 1 813 4964 83 12 23 chr6 29917445 29917767 -119599270 + MusHAL1 LINE L1 1776 2086 -626 1 813 540 252 115 68 chr6 29918376 29918610 -119598427 - MLT1D LTR MaLR -258 247 3 1 813 818 229 98 26 chr6 29918629 29918894 -119598143 + B4A SINE B4 5 288 -4 1 813 282 180 0 0 chr6 29919219 29919269 -119597768 - ORR1A1 LTR MaLR -8 338 289 1 813 2207 102 3 0 chr6 29919307 29919631 -119597406 - ORR1A2 LTR MaLR 0 327 3 1 813 359 221 45 34 chr6 29919786 29919875 -119597162 - B1F SINE Alu -58 91 2 1 813 1668 194 100 8 chr6 29919903 29920272 -119596765 + MTD LTR MaLR 1 403 -16 1 813 300 120 0 0 chr6 29920371 29920421 -119596616 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 813 3226 74 43 5 chr6 29920823 29921269 -119595768 + L1_Mus4 LINE L1 6162 6624 -12 1 813 223 122 41 0 chr6 29921282 29921331 -119595706 + GA-rich Low_complexity Low_complexity 3 53 0 1 813 233 335 83 61 chr6 29921547 29921811 -119595226 + ORR1E LTR MaLR 79 348 -11 1 813 371 325 66 25 chr6 29922165 29922257 -119594780 - ID_B1 SINE B4 0 292 113 1 813 279 275 86 21 chr6 29922257 29922350 -119594687 - PB1D10 SINE Alu -7 110 12 1 813 371 325 66 25 chr6 29922350 29922368 -119594669 - ID_B1 SINE B4 0 112 74 1 813 774 61 25 34 chr6 29922367 29922486 -119594551 - B2_Mm1t SINE B2 -75 118 1 1 813 258 32 0 0 chr6 29922534 29922565 -119594472 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 813 1205 92 26 36 chr6 29922576 29922768 -119594269 - B2_Mm1t SINE B2 -3 190 1 1 813 1532 43 21 0 chr6 29922775 29922962 -119594075 - B2_Mm2 SINE B2 -3 192 2 1 813 273 146 0 0 chr6 29923702 29923750 -119593287 + (TCCCC)n Simple_repeat Simple_repeat 4 51 0 1 813 264 135 21 43 chr6 29923748 29923841 -119593196 + (TCTG)n Simple_repeat Simple_repeat 2 92 0 1 813 317 144 33 40 chr6 29923862 29924014 -119593023 + (TCTCTG)n Simple_repeat Simple_repeat 2 152 0 1 813 298 357 0 0 chr6 29924015 29924127 -119592910 - PB1D10 SINE Alu -5 112 1 1 813 271 170 19 0 chr6 29924157 29924210 -119592827 - ID4_ SINE ID -29 54 1 1 813 3224 29 42 0 chr6 29924396 29924776 -119592261 + MTA_Mm LTR MaLR 1 396 0 1 813 802 102 11 151 chr6 29925039 29925172 -119591865 + RLTR12A LTR ERVK 1 132 -436 1 813 1216 48 0 0 chr6 29925172 29925317 -119591720 + B1_Mm SINE Alu 3 147 0 1 813 802 102 11 151 chr6 29925317 29925367 -119591670 + RLTR12A LTR ERVK 133 158 -410 1 813 2113 50 3 104 chr6 29925367 29925721 -119591316 + RLTR10 LTR ERVK 1 318 -72 1 813 278 159 0 0 chr6 29925757 29925820 -119591217 + RLTR10 LTR ERVK 259 321 -69 1 813 677 110 39 16 chr6 29925838 29925967 -119591070 + RLTR10 LTR ERVK 259 390 0 1 813 14946 23 1 4 chr6 29925967 29927655 -119589382 + RLTR10-int LTR ERVK 302 1984 -3 1 813 2113 50 3 104 chr6 29927657 29928011 -119589026 + RLTR10 LTR ERVK 1 318 -72 1 813 278 159 0 0 chr6 29928047 29928110 -119588927 + RLTR10 LTR ERVK 259 321 -69 1 813 898 54 15 15 chr6 29928111 29928243 -119588794 + RLTR10 LTR ERVK 259 390 0 1 813 1977 142 94 14 chr6 29928243 29928614 -119588423 + RLTR12A LTR ERVK 152 552 -16 1 813 565 207 0 0 chr6 29928637 29928753 -119588284 - B3 SINE B2 -100 116 1 1 813 208 367 33 0 chr6 29928862 29928952 -119588085 - MIRc SINE MIR -156 112 20 1 813 523 254 101 10 chr6 29928990 29929189 -119587848 + MTD LTR MaLR 2 218 -201 1 813 2271 176 54 16 chr6 29929197 29929699 -119587338 + RLTR11A2 LTR ERVK 4 524 -3 1 813 853 139 15 0 chr6 29929699 29929836 -119587201 + B1_Mur3 SINE Alu 5 143 -6 1 813 563 174 130 65 chr6 29929848 29930032 -119587005 + MTD LTR MaLR 224 419 0 1 813 269 26 26 0 chr6 29930042 29930080 -119586957 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 1 813 1038 52 0 0 chr6 29930080 29930216 -119586821 - B1_Mus1 SINE Alu -7 141 6 1 813 285 179 0 0 chr6 29930951 29931007 -119586030 + B1F1 SINE Alu 6 61 -88 1 813 268 268 163 10 chr6 29931155 29931253 -119585784 + B1_Mur2 SINE Alu 30 142 -7 1 813 1235 118 0 53 chr6 29931269 29931475 -119585562 + B2_Mm2 SINE B2 1 195 0 1 813 469 235 154 0 chr6 29931489 29931625 -119585412 + RSINE1 SINE B4 2 158 -7 1 813 245 29 29 0 chr6 29931629 29931663 -119585374 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 813 242 317 0 0 chr6 29931787 29931847 -119585190 + B1F2 SINE Alu 1 60 -89 1 813 1256 109 38 0 chr6 29931882 29932065 -119584972 + B2_Mm2 SINE B2 1 190 -5 1 813 1429 55 60 16 chr6 29932618 29932803 -119584234 + B2_Mm2 SINE B2 2 194 -1 1 813 1362 100 16 0 chr6 29932803 29932993 -119584044 + B2_Mm2 SINE B2 1 193 -2 1 813 187 245 36 36 chr6 29933010 29933065 -119583972 - L2 LINE L2 -562 2857 2803 1 813 369 92 108 0 chr6 29933390 29933455 -119583582 - ORR1D1 LTR MaLR 0 384 313 1 813 1473 177 25 59 chr6 29933535 29933859 -119583178 - ORR1D1 LTR MaLR -61 313 1 1 813 204 40 0 0 chr6 29934012 29934037 -119583000 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1 813 908 156 58 29 chr6 29934399 29934604 -119582433 - B3 SINE B2 0 216 6 1 813 28 0 0 0 chr6 29934799 29934827 -119582210 + AT_rich Low_complexity Low_complexity 1 28 0 1 813 349 307 218 11 chr6 29936847 29937127 -119579910 - ORR1E LTR MaLR -16 343 6 1 813 543 219 92 52 chr6 29937292 29937465 -119579572 + ORR1D2 LTR MaLR 6 185 -185 1 813 298 196 47 32 chr6 29937458 29937574 -119579463 + ORR1D2 LTR MaLR 293 405 -14 1 813 2957 32 0 0 chr6 29937659 29938028 -119579009 - MTA_Mm LTR MaLR 0 396 28 1 813 268 289 109 16 chr6 29938088 29938320 -119578717 - L1MD LINE L1 -707 5455 5199 1 813 3556 28 0 0 chr6 29938320 29938716 -119578321 + MTA_Mm LTR MaLR 1 396 0 1 813 268 306 98 25 chr6 29938716 29938764 -119578273 - L1MD LINE L1 -948 5198 5150 1 813 534 203 18 184 chr6 29938869 29939092 -119577945 - ORR1E LTR MaLR -163 196 11 1 813 201 108 0 0 chr6 29939212 29939249 -119577788 + (TTGG)n Simple_repeat Simple_repeat 3 39 0 1 813 1028 155 157 25 chr6 29939327 29939525 -119577512 - URR1B DNA MER1_type -1 224 1 1 813 665 132 219 50 chr6 29939608 29939768 -119577269 - B2_Mm2 SINE B2 -8 187 1 1 813 403 272 158 0 chr6 29939768 29939926 -119577111 - L1MC LINE L1 -1324 4822 4640 1 813 514 235 10 0 chr6 29940042 29940161 -119576876 + B1_Mur2 SINE Alu 1 120 0 1 813 1450 75 11 5 chr6 29940188 29940377 -119576660 + B2_Mm2 SINE B2 2 191 -4 1 813 1122 65 0 0 chr6 29940530 29940668 -119576369 + B1_Mus1 SINE Alu 2 139 -9 1 813 212 0 36 0 chr6 29940668 29940696 -119576341 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 813 509 246 59 81 chr6 29940862 29941048 -119575989 - B3A SINE B2 -16 182 1 1 813 263 239 116 0 chr6 29941068 29941223 -119575814 + (CCCCAG)n Simple_repeat Simple_repeat 1 173 0 1 813 223 278 0 59 chr6 29941218 29941371 -119575666 + (CACCC)n Simple_repeat Simple_repeat 3 146 0 1 813 417 39 0 0 chr6 29942788 29942839 -119574198 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 813 674 125 9 0 chr6 29942843 29942955 -119574082 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 1 813 23 0 0 0 chr6 29943467 29943490 -119573547 + AT_rich Low_complexity Low_complexity 1 23 0 1 813 228 224 194 0 chr6 29943653 29943720 -119573317 - ID4 SINE ID 0 83 4 1 813 786 278 96 31 chr6 29943895 29944155 -119572882 + B4A SINE B4 1 277 -15 1 813 324 0 0 0 chr6 29944161 29944197 -119572840 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 813 468 207 11 0 chr6 29944467 29944554 -119572483 - B1_Mus1 SINE Alu -26 122 35 1 813 638 284 94 9 chr6 29944768 29944981 -119572056 - MTE-int LTR MaLR -28 1552 1322 1 813 2788 62 87 13 chr6 29946006 29946385 -119570652 - MTB_Mm LTR MaLR 0 407 1 1 813 186 71 0 0 chr6 29946645 29946673 -119570364 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 1 813 849 138 80 0 chr6 29946677 29946815 -119570222 - B1_Mur4 SINE Alu 0 150 2 1 813 1082 142 124 20 chr6 29947113 29947314 -119569723 - URR1A DNA MER1_type 0 226 5 1 813 541 229 76 22 chr6 29947319 29947493 -119569544 + B3 SINE B2 13 198 0 1 813 468 301 61 66 chr6 29947555 29947585 -119569452 + B4A SINE B4 60 144 -148 1 813 898 136 14 7 chr6 29947585 29947726 -119569311 + B1_Mus1 SINE Alu 6 147 -1 1 813 468 301 61 66 chr6 29947726 29947768 -119569269 + B4A SINE B4 145 271 -21 1 813 499 235 106 0 chr6 29947776 29947908 -119569129 + MLT1A1 LTR MaLR 260 405 -3 1 813 1516 207 123 14 chr6 29948941 29949298 -119567739 + MTD LTR MaLR 23 418 -1 1 813 254 239 29 107 chr6 29949298 29949379 -119567658 + ID_B1 SINE B4 151 223 -1 1 813 1596 32 32 0 chr6 29949379 29949566 -119567471 + B2_Mm1a SINE B2 1 193 0 1 813 672 239 7 7 chr6 29949675 29949814 -119567223 - B1_Mur2 SINE Alu -8 141 3 1 813 601 257 56 46 chr6 29950048 29950244 -119566793 - B3A SINE B2 0 198 1 1 813 333 0 0 0 chr6 29950289 29950326 -119566711 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 813 416 295 23 25 chr6 29950540 29950687 -119566350 - PB1D10 SINE Alu -6 143 6 1 813 243 198 258 21 chr6 29951042 29951135 -119565902 + MIRb SINE MIR 85 199 -69 1 813 242 295 143 31 chr6 29951663 29951761 -119565276 + ID_B1 SINE B4 90 198 -26 1 813 305 254 49 22 chr6 29951785 29951904 -119565133 + PB1D7 SINE Alu 21 149 0 1 813 1601 37 11 0 chr6 29951906 29952095 -119564942 + B2_Mm1a SINE B2 1 191 -2 1 813 1473 73 16 0 chr6 29952106 29952297 -119564740 + B2_Mm2 SINE B2 2 195 0 1 813 26 0 0 0 chr6 29952385 29952411 -119564626 + AT_rich Low_complexity Low_complexity 1 26 0 1 813 597 244 268 0 chr6 29952420 29952584 -119564453 - ID_B1 SINE B4 -16 208 1 1 813 312 247 10 61 chr6 29953020 29953119 -119563918 + B4A SINE B4 1 94 -198 1 813 812 108 8 0 chr6 29953089 29953209 -119563828 + B1_Mus1 SINE Alu 28 148 0 1 813 341 212 176 0 chr6 29953273 29953358 -119563679 - B3 SINE B2 -87 129 30 1 813 436 221 64 103 chr6 29953373 29953529 -119563508 - L1M4 LINE L1 -1190 4956 4807 1 813 221 242 0 15 chr6 29953562 29953576 -119563461 + T-rich Low_complexity Low_complexity 54 67 0 1 813 587 51 13 0 chr6 29953576 29953655 -119563382 + (TCCC)n Simple_repeat Simple_repeat 4 83 0 1 813 221 242 0 15 chr6 29953655 29953692 -119563345 + T-rich Low_complexity Low_complexity 17 53 0 1 813 1020 131 0 14 chr6 29953692 29953839 -119563198 - B1_Mur4 SINE Alu -5 145 1 1 813 221 242 0 15 chr6 29953839 29953853 -119563184 + T-rich Low_complexity Low_complexity 3 16 0 1 813 230 238 0 113 chr6 29953880 29953951 -119563086 - MLT1B LTR MaLR -313 77 15 1 813 319 234 219 43 chr6 29954557 29954767 -119562270 - L1ME4a LINE L1 -9 6115 5869 1 813 191 32 65 0 chr6 29954823 29954854 -119562183 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 813 753 79 0 0 chr6 29955068 29955169 -119561868 - B1_Mus2 SINE Alu 0 147 47 1 813 309 276 33 33 chr6 29955113 29955203 -119561834 - MT2B LTR ERVL -344 257 168 1 813 367 245 20 50 chr6 29955216 29955315 -119561722 - ID_B1 SINE B4 -11 213 118 1 813 261 0 0 0 chr6 29955462 29955491 -119561546 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1 813 432 236 40 60 chr6 29955574 29955723 -119561314 + B3 SINE B2 66 211 -5 1 813 930 167 0 7 chr6 29955749 29955900 -119561137 + B1_Mur4 SINE Alu 1 150 0 1 813 528 167 0 0 chr6 29955912 29956008 -119561029 + GA-rich Low_complexity Low_complexity 2 97 0 1 813 352 237 93 137 chr6 29956015 29956176 -119560861 + RSINE1 SINE B4 11 164 -1 1 813 1117 78 0 27 chr6 29956177 29956362 -119560675 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 813 426 172 0 0 chr6 29956391 29956490 -119560547 + (CA)n Simple_repeat Simple_repeat 1 99 0 1 813 484 212 24 8 chr6 29956580 29956700 -119560337 + MTD LTR MaLR 252 417 -2 1 813 895 234 19 19 chr6 29956700 29956905 -119560132 + B3 SINE B2 2 206 -10 1 813 342 0 0 0 chr6 29957056 29957094 -119559943 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 813 396 266 0 41 chr6 29957094 29957192 -119559845 + PB1D10 SINE Alu 21 114 -3 1 813 496 239 67 7 chr6 29957221 29957239 -119559798 + B1F SINE Alu 1 143 -6 1 813 619 233 0 8 chr6 29957239 29957356 -119559681 + ID_B1 SINE B4 103 218 -6 1 813 352 236 67 11 chr6 29957397 29957487 -119559550 - HAL1-3A_ME LINE L1 -788 2070 1976 1 813 674 286 20 44 chr6 29957490 29957698 -119559339 - B3A SINE B2 -13 203 2 1 813 1102 93 93 0 chr6 29957736 29957897 -119559140 + B2_Mm1t SINE B2 2 177 -16 1 813 216 0 0 0 chr6 29958011 29958035 -119559002 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 813 515 202 190 16 chr6 29958066 29958187 -119558850 + B1_Mur1 SINE Alu 8 149 0 1 813 555 194 0 46 chr6 29958229 29958337 -119558700 - B1_Mur1 SINE Alu -1 148 46 1 813 368 217 233 9 chr6 29958369 29958485 -119558552 - ID_B1 SINE B4 0 224 83 1 813 411 209 87 0 chr6 29960133 29960242 -119556795 - Charlie5 DNA MER1_type -89 2535 2417 1 813 279 179 0 0 chr6 29960242 29960318 -119556719 - MT2A LTR ERVL 0 567 467 1 813 467 45 15 0 chr6 29960831 29960897 -119556140 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 813 341 272 241 35 chr6 29960898 29961039 -119555998 - B3A SINE B2 -28 170 1 1 813 1321 162 64 26 chr6 29961195 29961424 -119555613 + Lx9 LINE L1 7198 7442 -202 1 813 2138 82 112 0 chr6 29961424 29961718 -119555319 + ORR1A2 LTR MaLR 1 327 0 1 813 1321 162 64 26 chr6 29961718 29961754 -119555283 + Lx9 LINE L1 7443 7473 -171 1 813 351 0 0 0 chr6 29961757 29961796 -119555241 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 813 228 145 15 61 chr6 29961821 29961887 -119555150 + T-rich Low_complexity Low_complexity 5 67 0 1 813 536 143 66 0 chr6 29961892 29961983 -119555054 - B1_Mur3 SINE Alu 0 149 53 1 813 180 0 0 0 chr6 29962011 29962031 -119555006 + (T)n Simple_repeat Simple_repeat 1 20 0 1 813 993 79 64 14 chr6 29962033 29962174 -119554863 - B1_Mus1 SINE Alu 0 148 1 1 813 1316 84 5 40 chr6 29962186 29962385 -119554652 - B2_Mm1a SINE B2 0 193 2 1 813 416 178 48 29 chr6 29962385 29962489 -119554548 + Lx9 LINE L1 7538 7643 -1 1 813 1422 91 16 0 chr6 29962683 29962870 -119554167 + B2_Mm2 SINE B2 1 190 -5 1 813 664 191 29 7 chr6 29962898 29963035 -119554002 + B1_Mm SINE Alu 1 140 -7 1 813 204 125 0 0 chr6 29963044 29963076 -119553961 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 813 418 212 204 0 chr6 29963129 29963242 -119553795 + B1F2 SINE Alu 1 136 -13 1 813 375 78 0 0 chr6 29963242 29963293 -119553744 + (CAA)n Simple_repeat Simple_repeat 1 51 0 1 813 1170 95 0 0 chr6 29963293 29963441 -119553596 + B1_Mus1 SINE Alu 1 148 0 1 813 180 0 0 0 chr6 29963452 29963472 -119553565 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1 813 658 152 17 51 chr6 29964044 29964162 -119552875 - B1_Mur1 SINE Alu 0 149 36 1 813 234 176 58 183 chr6 29964225 29964329 -119552708 - L1MB8 LINE L1 -9 6169 6079 1 813 444 299 22 7 chr6 29964354 29964489 -119552548 + MIRb SINE MIR 132 268 0 1 813 3161 92 40 15 chr6 29964825 29965301 -119551736 + Lx LINE L1 6165 6652 -2 1 813 1144 95 0 0 chr6 29965309 29965456 -119551581 + B1_Mus2 SINE Alu 1 147 0 1 813 21 36 0 0 chr6 29965484 29965512 -119551525 + AT_rich Low_complexity Low_complexity 1 28 0 1 813 671 172 35 0 chr6 29965602 29965718 -119551319 - PB1D9 SINE Alu 0 120 1 1 813 566 203 0 75 chr6 29965731 29965743 -119551294 - B1_Mur1 SINE Alu -6 143 133 1 813 279 0 0 0 chr6 29965743 29965774 -119551263 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1 813 566 203 0 75 chr6 29965774 29965894 -119551143 - B1_Mur1 SINE Alu -17 132 21 1 813 701 264 36 76 chr6 29965958 29966183 -119550854 + B3 SINE B2 1 216 0 1 813 493 286 71 0 chr6 29966205 29966331 -119550706 + B1F SINE Alu 7 141 -8 1 813 409 282 95 34 chr6 29966478 29966625 -119550412 - ID_B1 SINE B4 -6 218 63 1 813 221 241 0 18 chr6 29966710 29966765 -119550272 - AluG_3 SINE Alu -92 219 166 1 813 318 230 93 13 chr6 29966760 29966835 -119550202 - B1F1 SINE Alu -68 81 1 1 813 266 347 39 39 chr6 29966835 29966855 -119550182 - ID_B1 SINE B4 -60 142 63 1 813 218 241 11 0 chr6 29966887 29966974 -119550063 + (TA)n Simple_repeat Simple_repeat 2 89 0 1 813 349 225 42 0 chr6 29966995 29967066 -119549971 - PB1D9 SINE Alu -1 119 46 1 813 243 0 0 0 chr6 29967095 29967122 -119549915 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 813 1011 29 0 1 chr6 29967122 29967251 -119549786 - B1_Mus2 SINE Alu -2 145 17 1 813 401 248 28 57 chr6 29967155 29967296 -119549741 - MT2B LTR ERVL -337 264 128 1 813 349 270 117 29 chr6 29967562 29967792 -119549245 - MTEb LTR MaLR 0 379 77 1 813 455 235 104 22 chr6 29967871 29968006 -119549031 - B1F2 SINE Alu -3 146 1 1 813 729 311 66 26 chr6 29968014 29968187 -119548850 - L1MA4A LINE L1 -216 5963 5787 1 813 1937 159 53 53 chr6 29968187 29968565 -119548472 - ORR1C1 LTR MaLR 0 378 1 1 813 729 302 60 21 chr6 29968565 29968739 -119548298 - L1MA4A LINE L1 -391 5788 5603 1 813 752 237 19 87 chr6 29968769 29968977 -119548060 - B3A SINE B2 -4 194 1 1 813 600 53 0 0 chr6 29969064 29969140 -119547897 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 813 375 219 62 62 chr6 29969748 29969860 -119547177 + MIRb SINE MIR 46 157 -111 1 813 502 276 69 0 chr6 29969928 29970073 -119546964 + ID_B1 SINE B4 2 156 -68 1 813 229 271 99 14 chr6 29970010 29970081 -119546956 + PB1D10 SINE Alu 10 86 -31 1 813 1173 81 0 0 chr6 29970238 29970386 -119546651 + B1_Mus1 SINE Alu 1 148 0 1 813 585 174 124 0 chr6 29970414 29970535 -119546502 - Lx7 LINE L1 -364 7332 7197 1 813 660 71 0 0 chr6 29970537 29970622 -119546415 + MT2C_Mm LTR ERVL 3 87 -388 1 813 418 69 0 0 chr6 29970635 29970693 -119546344 - B1_Mur4 SINE Alu 0 150 93 1 813 313 200 33 0 chr6 29970699 29970759 -119546278 - Lx7 LINE L1 -515 7181 7120 1 813 472 247 110 87 chr6 29970759 29970932 -119546105 + B3 SINE B2 26 202 -14 1 813 1873 139 73 12 chr6 29970932 29971260 -119545777 - ORR1B1 LTR MaLR 0 394 47 1 813 211 114 68 0 chr6 29971332 29971376 -119545661 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 1 813 781 95 0 0 chr6 29971376 29971481 -119545556 - B2_Mm2 SINE B2 -88 107 3 1 813 746 179 8 0 chr6 29971535 29971658 -119545379 - B1_Mur1 SINE Alu -13 136 13 1 813 1770 158 61 33 chr6 29972348 29972708 -119544329 - ORR1D1 LTR MaLR 0 374 5 1 813 554 269 124 8 chr6 29972933 29973191 -119543846 + L1M5 LINE L1 3285 3572 -2574 1 813 1199 113 26 21 chr6 29973195 29973384 -119543653 + B2_Mm1t SINE B2 1 190 -3 1 813 289 266 45 150 chr6 29973413 29973544 -119543493 + B4A SINE B4 40 174 -118 1 813 241 306 0 183 chr6 29973452 29973556 -119543481 + B1F2 SINE Alu 13 97 -52 1 813 323 0 0 0 chr6 29973566 29973604 -119543433 - RMER19A LTR ERVK 0 737 700 1 813 1632 116 112 4 chr6 29973603 29973863 -119543174 - RMER19A LTR ERVK -449 288 1 1 813 274 260 22 135 chr6 29973877 29973966 -119543071 + RSINE1 SINE B4 87 165 0 1 813 716 228 8 10 chr6 29974031 29974166 -119542871 + B3A SINE B2 2 133 -60 1 813 189 0 0 0 chr6 29974166 29974187 -119542850 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 813 198 0 0 0 chr6 29974187 29974208 -119542829 + (GA)n Simple_repeat Simple_repeat 2 23 0 1 813 514 260 67 30 chr6 29974211 29974346 -119542691 + B3A SINE B2 28 167 -31 1 813 21 57 0 0 chr6 29974366 29974401 -119542636 + AT_rich Low_complexity Low_complexity 1 35 0 1 813 463 111 115 62 chr6 29974435 29974531 -119542506 - B1_Mur4 SINE Alu -7 143 43 1 813 778 148 0 45 chr6 29974533 29975454 -119541583 + CT-rich Low_complexity Low_complexity 1 879 0 1 813 180 143 0 0 chr6 29975454 29975496 -119541541 + (TCTCCC)n Simple_repeat Simple_repeat 2 43 0 1 813 1505 68 16 0 chr6 29975538 29975730 -119541307 - B2_Mm2 SINE B2 0 195 1 1 813 188 0 74 0 chr6 29975730 29975757 -119541280 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 1 813 1217 28 21 0 chr6 29975758 29975902 -119541135 - B1_Mm SINE Alu 0 147 1 1 813 264 122 0 0 chr6 29975902 29975943 -119541094 + (T)n Simple_repeat Simple_repeat 1 41 0 1 813 759 263 6 6 chr6 29975965 29976145 -119540892 - B3A SINE B2 -18 180 1 1 813 710 238 109 36 chr6 29976145 29976184 -119540853 - B3 SINE B2 -5 211 165 1 813 375 23 0 0 chr6 29976184 29976228 -119540809 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 813 537 16 0 0 chr6 29976228 29976289 -119540748 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 813 710 238 109 36 chr6 29976289 29976440 -119540597 - B3 SINE B2 -52 164 7 1 813 345 47 0 0 chr6 29976451 29976494 -119540543 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 813 621 182 141 0 chr6 29976515 29976636 -119540401 - B1_Mur2 SINE Alu -7 142 5 1 813 387 272 75 139 chr6 29976648 29976900 -119540137 + MLT1F-int LTR MaLR 857 1092 -397 1 813 394 296 65 29 chr6 29977000 29977139 -119539898 - ID_B1 SINE B4 -29 195 52 1 813 394 229 0 19 chr6 29977154 29977244 -119539793 - B1F SINE Alu -58 91 3 1 813 277 284 174 0 chr6 29977299 29977408 -119539629 + ID_B1 SINE B4 95 222 -2 1 813 1190 22 22 0 chr6 29977413 29977550 -119539487 + B1_Mm SINE Alu 2 141 -6 1 813 456 135 0 0 chr6 29977550 29977624 -119539413 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 813 1382 86 38 0 chr6 29978093 29978279 -119538758 - B2_Mm2 SINE B2 -2 193 1 1 813 252 306 23 113 chr6 29978392 29978569 -119538468 + RMER15 LTR ERVL 1 161 -414 1 813 498 230 64 43 chr6 29978597 29978738 -119538299 + RMER15 LTR ERVL 342 485 -90 1 813 518 218 23 39 chr6 29978986 29979115 -119537922 - MER2 DNA MER2_type -30 315 189 1 813 692 232 58 163 chr6 29979124 29979319 -119537718 + ORR1D1 LTR MaLR 103 279 -95 1 813 713 241 120 0 chr6 29979319 29979510 -119537527 - B3 SINE B2 -1 215 2 1 813 692 232 58 163 chr6 29979510 29979608 -119537429 + ORR1D1 LTR MaLR 280 365 -9 1 813 613 240 66 22 chr6 29979602 29979785 -119537252 - MER2 DNA MER2_type -146 199 9 1 813 236 238 0 12 chr6 29980032 29980101 -119536936 + T-rich Low_complexity Low_complexity 22 89 0 1 813 474 143 140 119 chr6 29980101 29980244 -119536793 - B1_Mur3 SINE Alu 0 149 4 1 813 236 238 0 12 chr6 29980244 29980259 -119536778 + T-rich Low_complexity Low_complexity 7 21 0 1 813 463 262 110 8 chr6 29980291 29980418 -119536619 - RSINE1 SINE B4 -23 142 3 1 813 1120 52 0 0 chr6 29980664 29980799 -119536238 + B1_Mm SINE Alu 1 135 -12 1 813 204 40 0 0 chr6 29980800 29980825 -119536212 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 813 2292 80 19 0 chr6 29981011 29981322 -119535715 - ORR1A2 LTR MaLR -8 319 3 1 813 1422 23 80 6 chr6 29981342 29981356 -119535681 - B2_Mm1a SINE B2 -4 189 176 1 813 279 0 0 0 chr6 29981356 29981387 -119535650 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 813 1422 23 80 6 chr6 29981387 29981547 -119535490 - B2_Mm1a SINE B2 -18 175 3 1 813 372 195 33 24 chr6 29981548 29981653 -119535384 - B3 SINE B2 -17 199 1 1 813 596 14 14 0 chr6 29981666 29981739 -119535298 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 813 911 247 18 0 chr6 29981749 29981919 -119535118 - B3 SINE B2 -42 174 2 1 813 207 0 0 0 chr6 29981929 29981952 -119535085 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 813 612 111 17 8 chr6 29981964 29982082 -119534955 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 1 813 552 156 72 10 chr6 29982082 29982179 -119534858 - B1_Mur1 SINE Alu -12 137 35 1 813 1293 195 130 179 chr6 29982193 29982289 -119534748 - MT2B LTR ERVL -2 599 548 1 813 261 0 0 0 chr6 29982289 29982318 -119534719 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 813 1293 195 130 179 chr6 29982318 29982851 -119534186 - MT2B LTR ERVL -54 547 1 1 813 22 35 0 0 chr6 29982862 29982891 -119534146 + AT_rich Low_complexity Low_complexity 1 29 0 1 813 243 146 0 0 chr6 29982894 29982935 -119534102 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 813 443 314 27 69 chr6 29982935 29983123 -119533914 - B3A SINE B2 -16 182 3 1 813 271 259 44 56 chr6 29983199 29983289 -119533748 - YREP_Mm Unknown Unknown -1496 316 228 1 813 390 260 102 8 chr6 29983209 29983298 -119533739 + B1F1 SINE Alu 10 108 -41 1 813 1205 34 0 27 chr6 29983298 29983448 -119533589 + B1_Mm SINE Alu 1 146 -1 1 813 390 260 102 8 chr6 29983448 29983486 -119533551 + B1F1 SINE Alu 109 148 -1 1 813 312 312 26 35 chr6 29983708 29983824 -119533213 - PB1 SINE Alu -4 123 9 1 813 360 262 221 0 chr6 29983852 29983974 -119533063 - B1F SINE Alu 0 149 1 1 813 408 272 6 169 chr6 29983972 29984072 -119532965 - B1F SINE Alu 0 149 69 1 813 887 134 240 0 chr6 29984072 29984243 -119532794 - B3 SINE B2 0 216 5 1 813 408 272 6 169 chr6 29984243 29984319 -119532718 - B1F SINE Alu -81 68 2 1 813 595 228 66 7 chr6 29984339 29984476 -119532561 - B1F2 SINE Alu -2 147 3 1 813 264 195 0 0 chr6 29984483 29984525 -119532512 + T-rich Low_complexity Low_complexity 36 77 0 1 813 612 173 113 0 chr6 29984525 29984658 -119532379 - B1_Mur2 SINE Alu -1 148 1 1 813 264 195 0 0 chr6 29984658 29984692 -119532345 + T-rich Low_complexity Low_complexity 2 35 0 1 813 189 0 0 0 chr6 29984697 29984718 -119532319 + (TTC)n Simple_repeat Simple_repeat 2 22 0 1 813 1164 62 0 0 chr6 29984718 29984864 -119532173 - B1_Mus2 SINE Alu 0 147 2 1 813 350 167 14 43 chr6 29984921 29984990 -119532047 + B1_Mus2 SINE Alu 81 147 0 1 813 421 233 0 0 chr6 29985128 29985218 -119531819 - L1MC3 LINE L1 -798 6987 6898 1 813 878 229 76 5 chr6 29985273 29985471 -119531566 + ID_B1 SINE B4 7 218 -6 1 813 357 309 69 37 chr6 29985459 29985647 -119531390 + MLT1B LTR MaLR 155 348 -42 1 813 264 59 0 0 chr6 29985733 29985767 -119531270 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 813 221 255 39 0 chr6 29985779 29985830 -119531207 - RSINE1 SINE B4 -13 152 100 1 813 690 203 14 42 chr6 29985829 29985973 -119531064 - B1_Mur1 SINE Alu 0 149 10 1 813 1336 67 16 27 chr6 29986176 29986359 -119530678 + B2_Mm2 SINE B2 1 181 -14 1 813 1230 55 0 0 chr6 29986368 29986514 -119530523 - B1_Mm SINE Alu 0 147 2 1 813 406 224 28 88 chr6 29986535 29986652 -119530385 + B1_Mur2 SINE Alu 43 149 0 1 813 185 0 0 111 chr6 29986652 29986697 -119530340 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 1 813 283 179 164 0 chr6 29986739 29986806 -119530231 + ID4_ SINE ID 3 80 -3 1 813 1209 83 0 0 chr6 29987850 29988007 -119529030 + B2_Mm2 SINE B2 1 157 -38 1 813 279 0 0 0 chr6 29988009 29988040 -119528997 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 813 720 104 0 45 chr6 29988285 29988396 -119528641 + B2_Mm2 SINE B2 2 107 -88 1 813 511 65 53 53 chr6 29988491 29988604 -119528433 + CT-rich Low_complexity Low_complexity 3 115 0 1 813 495 183 43 0 chr6 29988605 29988698 -119528339 - B1F2 SINE Alu 0 149 53 1 813 1652 47 0 0 chr6 29988746 29988939 -119528098 + B2_Mm1t SINE B2 1 193 0 1 813 313 256 98 0 chr6 29988954 29989036 -119528001 - ID_B1 SINE B4 -28 196 107 1 813 329 276 40 30 chr6 29989066 29989167 -119527870 - PB1D10 SINE Alu -11 106 5 1 813 1013 146 0 0 chr6 29989328 29989472 -119527565 + B1_Mur4 SINE Alu 1 144 -6 1 813 1130 88 0 0 chr6 29989607 29989754 -119527283 - B1_Mus1 SINE Alu 0 148 2 1 813 246 32 0 0 chr6 29989903 29989934 -119527103 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 813 243 0 0 0 chr6 29989934 29989960 -119527077 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 813 705 241 7 7 chr6 29990179 29990317 -119526720 + B1_Mur2 SINE Alu 4 141 -8 1 813 246 62 0 0 chr6 29990338 29990370 -119526667 + (CTG)n Simple_repeat Simple_repeat 2 33 0 1 813 279 0 0 0 chr6 29990696 29990727 -119526310 + (T)n Simple_repeat Simple_repeat 1 31 0 1 813 1128 88 0 0 chr6 29990727 29990874 -119526163 - B1_Mus2 SINE Alu 0 147 1 1 813 850 221 85 27 chr6 29991388 29991611 -119525426 - MTEa LTR MaLR -143 236 1 1 813 233 182 18 0 chr6 29991768 29991823 -119525214 + GA-rich Low_complexity Low_complexity 3 58 0 1 813 1584 42 5 0 chr6 29992085 29992277 -119524760 + B2_Mm1a SINE B2 1 193 0 1 813 1653 36 0 0 chr6 29993230 29993423 -119523614 - B2_Mm1t SINE B2 0 193 1 1 813 776 152 206 23 chr6 29993477 29993652 -119523385 - B3 SINE B2 -9 207 1 1 813 1205 62 0 0 chr6 29994221 29994367 -119522670 + B1_Mus1 SINE Alu 1 146 -2 1 813 567 53 0 0 chr6 29994369 29994444 -119522593 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1 813 451 314 28 35 chr6 29994455 29994597 -119522440 - RSINE1 SINE B4 -15 150 10 1 813 1470 70 5 5 chr6 29995008 29995195 -119521842 + B2_Mm2 SINE B2 1 187 -8 1 813 271 300 69 10 chr6 29995445 29995546 -119521491 + MIR SINE MIR 86 192 -70 1 813 518 202 216 18 chr6 29995558 29995729 -119521308 + ID_B1 SINE B4 1 205 -19 1 813 1247 54 0 0 chr6 29996113 29996260 -119520777 - B1_Mus2 SINE Alu 0 147 1 1 813 186 328 76 25 chr6 29996289 29996408 -119520629 - L2 LINE L2 -613 2806 2682 1 813 668 193 19 58 chr6 29996447 29996601 -119520436 + B1F2 SINE Alu 2 149 0 1 813 937 85 41 34 chr6 29996706 29996852 -119520185 + B1_Mus1 SINE Alu 2 148 0 1 813 225 65 0 0 chr6 29996871 29996902 -119520135 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 1 813 985 116 7 26 chr6 29996939 29997090 -119519947 + B1_Mus1 SINE Alu 1 148 0 1 813 213 94 0 0 chr6 29997989 29998021 -119519016 + (CGG)n Simple_repeat Simple_repeat 1 32 0 1 813 57 57 0 24 chr6 29998168 29998293 -119518744 + GC_rich Low_complexity Low_complexity 1 122 0 1 813 644 191 61 0 chr6 30000445 30000560 -119516477 - B1_Mur3 SINE Alu -27 122 1 1 813 280 273 0 61 chr6 30000490 30000572 -119516465 - B4A SINE B4 -138 154 78 2 813 249 279 0 0 chr6 30001029 30001097 -119515940 + ID4_ SINE ID 5 72 -11 3 813 629 250 72 0 chr6 30001178 30001330 -119515707 - B3 SINE B2 -10 206 44 4 813 436 275 13 53 chr6 30001321 30001471 -119515566 - B3 SINE B2 -70 146 3 5 813 632 146 19 12 chr6 30001538 30001658 -119515379 - B3 SINE B2 -77 118 1 6 813 780 179 0 36 chr6 30001678 30001846 -119515191 - B2_Mm2 SINE B2 -31 164 3 7 813 457 262 40 24 chr6 30001860 30001985 -119515052 - ID_B1 SINE B4 -2 222 96 8 813 1206 61 0 0 chr6 30002230 30002377 -119514660 - B1_Mus1 SINE Alu 0 148 2 9 813 234 319 0 0 chr6 30003934 30004006 -119513031 - ID2 SINE ID -7 76 5 1 813 1251 105 16 27 chr6 30004346 30004532 -119512505 - B2_Mm1a SINE B2 -9 184 1 1 813 201 154 0 0 chr6 30004536 30004575 -119512462 + A-rich Low_complexity Low_complexity 1 39 0 1 813 1499 68 0 40 chr6 30004595 30004795 -119512242 + B2_Mm1t SINE B2 1 192 -1 1 813 505 267 117 0 chr6 30004945 30005065 -119511972 + RSINE1 SINE B4 3 136 -29 1 813 236 281 56 99 chr6 30005226 30005368 -119511669 + Charlie4z DNA MER1_type 6 141 -26 1 813 1207 55 0 0 chr6 30005709 30005854 -119511183 - B1_Mus2 SINE Alu 0 147 3 1 813 1551 33 44 0 chr6 30005866 30006049 -119510988 - B2_Mm1t SINE B2 -1 192 2 1 813 608 130 52 9 chr6 30006145 30006261 -119510776 - B1_Mus1 SINE Alu 0 148 28 1 813 1181 61 7 0 chr6 30006261 30006408 -119510629 + B1_Mus1 SINE Alu 1 148 0 1 813 407 163 196 0 chr6 30006607 30006699 -119510338 + B1_Mur1 SINE Alu 34 143 -6 2 813 300 256 95 71 chr6 30006699 30006733 -119510304 + B4A SINE B4 119 247 -45 2 813 306 73 0 0 chr6 30006879 30006920 -119510117 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 2 813 238 297 13 26 chr6 30006920 30006996 -119510041 - ID2 SINE ID -7 76 2 2 813 459 206 317 6 chr6 30007163 30007522 -119509515 - L1MA4 LINE L1 -2 6298 5836 2 813 192 125 0 0 chr6 30007618 30007650 -119509387 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 2 813 1243 48 0 0 chr6 30008018 30008165 -119508872 - B1_Mus1 SINE Alu 0 148 2 2 813 344 55 342 9 chr6 30008176 30008284 -119508753 - B2_Mm2 SINE B2 -5 190 47 2 813 1198 68 0 6 chr6 30008331 30008495 -119508542 - B2_Mm2 SINE B2 -30 165 3 2 813 1361 87 22 0 chr6 30008506 30008690 -119508347 - B2_Mm2 SINE B2 -7 188 1 2 813 647 224 14 20 chr6 30008973 30009119 -119507918 - B1_Mus2 SINE Alu -2 145 1 3 813 215 262 33 0 chr6 30009236 30009297 -119507740 + (TTCA)n Simple_repeat Simple_repeat 3 65 0 3 813 306 190 0 0 chr6 30009297 30009355 -119507682 - B1F1 SINE Alu -14 135 78 3 813 566 280 0 0 chr6 30009790 30009922 -119507115 + B1F2 SINE Alu 1 132 -17 3 813 432 290 43 14 chr6 30010027 30010167 -119506870 + ID_B1 SINE B4 75 218 -6 3 813 463 163 47 0 chr6 30010194 30010280 -119506757 - URR1B DNA MER1_type 0 225 136 3 813 223 254 0 0 chr6 30010280 30010347 -119506690 + T-rich Low_complexity Low_complexity 1 67 0 3 813 272 238 175 19 chr6 30010810 30010913 -119506124 + PB1D7 SINE Alu 2 120 0 3 813 568 143 29 0 chr6 30010955 30011060 -119505977 + B1_Mur1 SINE Alu 42 149 0 3 813 403 181 134 62 chr6 30012011 30012123 -119504914 - PB1D9 SINE Alu 0 120 1 3 813 378 0 0 0 chr6 30012251 30012293 -119504744 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 813 1385 74 28 0 chr6 30012293 30012469 -119504568 - B2_Mm2 SINE B2 -12 183 3 4 813 295 225 103 51 chr6 30012541 30012658 -119504379 + RSINE1 SINE B4 43 165 0 4 813 246 195 93 155 chr6 30012706 30012803 -119504234 + B1F SINE Alu 1 91 -58 4 813 287 258 135 0 chr6 30012727 30012816 -119504221 + ID_B1 SINE B4 111 211 -13 4 813 338 250 113 19 chr6 30012892 30012998 -119504039 - B1F1 SINE Alu -33 116 1 4 813 312 27 0 0 chr6 30013119 30013156 -119503881 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 813 943 110 48 0 chr6 30013362 30013508 -119503529 + B2_Mm2 SINE B2 2 154 -41 4 813 351 0 0 0 chr6 30013513 30013552 -119503485 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 813 470 253 43 98 chr6 30013597 30013781 -119503256 + B4 SINE B4 1 174 -118 4 813 240 242 198 20 chr6 30014019 30014120 -119502917 - PB1D9 SINE Alu -1 119 1 5 814 683 157 82 7 chr6 30015508 30015643 -119501394 - B1_Mur1 SINE Alu 0 149 5 5 814 521 226 0 31 chr6 30015987 30016115 -119500922 + B1F2 SINE Alu 10 133 -16 5 814 258 32 0 0 chr6 30016189 30016220 -119500817 + (GTGTG)n Simple_repeat Simple_repeat 2 32 0 5 814 1243 61 0 0 chr6 30016438 30016585 -119500452 + B1_Mus1 SINE Alu 2 148 0 5 814 583 220 171 27 chr6 30016734 30016921 -119500116 - ID_B1 SINE B4 -8 216 3 5 814 1214 48 0 0 chr6 30017186 30017331 -119499706 + B1_Mus1 SINE Alu 4 148 0 5 814 432 299 154 45 chr6 30017835 30018062 -119498975 + L2 LINE L2 2567 2825 -594 5 814 1873 155 160 16 chr6 30018062 30018430 -119498607 + MTC LTR MaLR 1 421 0 5 814 432 299 154 45 chr6 30018430 30018559 -119498478 + L2 LINE L2 2826 2962 -457 5 814 262 294 86 59 chr6 30018609 30018761 -119498276 + B4 SINE B4 49 204 -88 5 814 398 171 41 132 chr6 30018648 30018769 -119498268 + B1_Mur4 SINE Alu 15 124 -26 6 814 474 18 0 0 chr6 30018769 30018824 -119498213 + (GGAAA)n Simple_repeat Simple_repeat 5 59 0 6 814 1307 103 22 5 chr6 30018962 30019147 -119497890 + B2_Mm1a SINE B2 1 188 -5 6 814 1306 95 0 16 chr6 30019318 30019487 -119497550 + B2_Mm2 SINE B2 2 169 -26 6 814 1211 61 0 0 chr6 30019487 30019634 -119497403 + B1_Mus1 SINE Alu 2 148 0 6 814 1306 95 0 16 chr6 30019634 30019646 -119497391 + B2_Mm2 SINE B2 170 180 -15 6 814 1217 65 118 0 chr6 30019956 30020125 -119496912 - B2_Mm2 SINE B2 -5 190 2 6 814 683 243 14 0 chr6 30020168 30020308 -119496729 - B1_Mur1 SINE Alu -7 142 1 6 814 182 37 37 0 chr6 30020330 30020357 -119496680 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 6 814 362 192 67 48 chr6 30020358 30020462 -119496575 - PB1D7 SINE Alu -1 119 14 6 814 624 208 34 27 chr6 30020802 30020950 -119496087 - B1_Mur3 SINE Alu 0 149 1 6 814 525 328 45 20 chr6 30021264 30021476 -119495561 - B3A SINE B2 -8 208 1 7 814 310 247 78 20 chr6 30022037 30022148 -119494889 + B3 SINE B2 20 143 -55 7 814 216 67 0 0 chr6 30022269 30022299 -119494738 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 814 1063 58 0 0 chr6 30022306 30022444 -119494593 - B2_Mm2 SINE B2 -31 164 27 7 814 699 215 21 7 chr6 30022437 30022582 -119494455 - B1_Mur4 SINE Alu -3 147 1 7 814 644 216 126 47 chr6 30022608 30022798 -119494239 - B3 SINE B2 -1 215 11 7 814 543 271 30 0 chr6 30022807 30022940 -119494097 - B1F2 SINE Alu 0 149 13 7 814 274 346 40 81 chr6 30022809 30022957 -119494080 - B4 SINE B4 -69 223 82 7 814 21 71 0 0 chr6 30023636 30023678 -119493359 + AT_rich Low_complexity Low_complexity 1 42 0 7 814 460 303 98 7 chr6 30023694 30023837 -119493200 - RSINE1 SINE B4 -6 159 4 7 814 455 214 0 0 chr6 30024274 30024363 -119492674 - PB1 SINE Alu -7 120 32 8 814 243 0 0 0 chr6 30024603 30024630 -119492407 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 814 624 189 143 12 chr6 30024706 30024867 -119492170 + MTC LTR MaLR 1 182 -239 8 814 343 141 58 103 chr6 30024866 30024953 -119492084 + MTC LTR MaLR 303 385 -34 8 814 4493 148 135 33 chr6 30024923 30025784 -119491253 + MTC-int LTR MaLR 40 936 -322 8 814 813 11 0 0 chr6 30025784 30025878 -119491159 + (CTTTG)n Simple_repeat Simple_repeat 3 96 0 8 814 4493 148 135 33 chr6 30025878 30026123 -119490914 + MTC-int LTR MaLR 937 1257 -1 8 814 1483 151 131 18 chr6 30026123 30026466 -119490571 + MTC LTR MaLR 1 382 -39 8 814 772 146 27 34 chr6 30026506 30026655 -119490382 - B1_Mus1 SINE Alu 0 148 1 8 814 869 212 90 15 chr6 30026711 30026912 -119490125 - B3 SINE B2 0 216 1 8 814 255 256 54 65 chr6 30026978 30027070 -119489967 - B1F1 SINE Alu -56 93 3 8 814 288 243 104 28 chr6 30027162 30027268 -119489769 + B3 SINE B2 47 160 -56 8 814 858 222 5 66 chr6 30027350 30027562 -119489475 + B3 SINE B2 3 201 -15 8 814 225 0 0 0 chr6 30027811 30027836 -119489201 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 9 814 586 246 81 116 chr6 30028025 30028310 -119488727 - B4A SINE B4 -12 280 6 9 814 189 0 0 0 chr6 30028363 30028384 -119488653 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 9 814 1457 43 49 0 chr6 30028421 30028605 -119488432 - B2_Mm1a SINE B2 0 193 1 9 814 867 121 0 41 chr6 30028759 30028905 -119488132 + B1_Mur2 SINE Alu 9 148 -1 9 814 267 31 0 0 chr6 30028956 30028988 -119488049 + (GA)n Simple_repeat Simple_repeat 1 32 0 9 814 564 106 0 0 chr6 30029457 30029542 -119487495 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 9 814 338 194 0 56 chr6 30029551 30029622 -119487415 - B1_Mur1 SINE Alu -6 143 77 9 814 572 184 10 0 chr6 30029746 30029849 -119487188 - PB1D9 SINE Alu -5 115 12 9 814 440 273 94 88 chr6 30030346 30030527 -119486510 + B3A SINE B2 1 182 -16 9 814 382 195 202 9 chr6 30030615 30030729 -119486308 - Lx3C LINE L1 -106 6870 6735 1 814 1667 16 5 16 chr6 30030766 30030960 -119486077 + B2_Mm1a SINE B2 2 193 0 1 814 310 291 96 32 chr6 30030994 30031182 -119485855 - MER3 DNA MER1_type 0 209 10 1 814 521 191 325 6 chr6 30031280 30031443 -119485594 - B3 SINE B2 0 216 2 1 814 245 265 269 13 chr6 30031929 30032078 -119484959 - MIR SINE MIR -68 194 8 1 814 344 330 103 40 chr6 30032301 30032525 -119484512 + Tigger7 DNA MER2_type 11 248 -2243 1 814 793 160 40 27 chr6 30032828 30032976 -119484061 - B1_Mur4 SINE Alu 0 150 1 1 814 28 0 0 0 chr6 30032989 30033017 -119484020 + AT_rich Low_complexity Low_complexity 1 28 0 1 814 301 188 360 9 chr6 30033017 30033124 -119483913 - RSINE1 SINE B4 -10 155 12 1 814 459 0 0 0 chr6 30033124 30033175 -119483862 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1 814 207 69 0 0 chr6 30033668 30033697 -119483340 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 1 814 238 238 111 103 chr6 30033698 30033729 -119483308 - B1F SINE Alu -7 142 122 1 814 914 154 159 0 chr6 30033729 30033924 -119483113 - URR1A DNA MER1_type 0 226 1 1 814 238 246 110 100 chr6 30033924 30034028 -119483009 - B1F SINE Alu -28 121 5 1 814 475 245 139 36 chr6 30034050 30034215 -119482822 - B3A SINE B2 -16 182 1 1 814 952 211 32 32 chr6 30034926 30035142 -119481895 + B3 SINE B2 1 216 0 1 814 611 189 54 0 chr6 30035152 30035263 -119481774 - PB1D9 SINE Alu -2 118 2 1 814 1362 90 21 0 chr6 30036200 30036388 -119480649 - B2_Mm2 SINE B2 -2 193 2 1 814 24 0 0 0 chr6 30036791 30036815 -119480222 + AT_rich Low_complexity Low_complexity 1 24 0 1 814 291 283 269 6 chr6 30036911 30037078 -119479959 - L1MB3 LINE L1 -8 6163 5953 1 814 281 64 0 41 chr6 30037092 30037141 -119479896 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 814 1176 62 0 7 chr6 30037146 30037293 -119479744 - B1_Mus1 SINE Alu 0 148 3 1 814 827 161 256 0 chr6 30037325 30037493 -119479544 - B3 SINE B2 -4 212 2 1 814 309 154 84 0 chr6 30037695 30037766 -119479271 - L1MB3 LINE L1 -2073 5922 5838 1 814 323 326 32 0 chr6 30037768 30037863 -119479174 - L1MC1 LINE L1 -22 6311 6214 1 814 341 239 70 8 chr6 30037857 30037997 -119479040 + L1MA8 LINE L1 6136 6286 -5 1 814 526 268 161 16 chr6 30038154 30038397 -119478640 - L1MC LINE L1 -1690 4456 4179 1 814 217 337 10 21 chr6 30038402 30038499 -119478538 + CT-rich Low_complexity Low_complexity 4 99 0 1 814 522 69 431 10 chr6 30038502 30038604 -119478433 - B1_Mm SINE Alu 0 147 3 1 814 787 183 81 30 chr6 30038616 30038813 -119478224 - L1MC LINE L1 -1978 4168 3962 1 814 1026 206 26 18 chr6 30038815 30039042 -119477995 - L1MB2 LINE L1 -344 5827 5599 1 814 684 152 62 23 chr6 30039047 30039175 -119477862 - B1_Mur3 SINE Alu -16 133 1 1 814 1042 43 54 60 chr6 30039293 30039442 -119477595 + B1_Mus1 SINE Alu 1 148 0 1 814 1378 77 16 11 chr6 30039546 30039730 -119477307 - B2_Mm2 SINE B2 -9 186 2 1 814 590 122 0 0 chr6 30040257 30040339 -119476698 - ID4 SINE ID 0 83 2 1 814 22 0 0 0 chr6 30040905 30040927 -119476110 + AT_rich Low_complexity Low_complexity 1 22 0 1 814 260 156 0 0 chr6 30041266 30041311 -119475726 + ID2 SINE ID 1 45 -38 1 814 330 288 0 0 chr6 30041488 30041568 -119475469 + ID4 SINE ID 4 83 0 1 814 456 296 35 0 chr6 30041580 30041695 -119475342 + PB1 SINE Alu 2 120 -7 1 814 621 225 56 12 chr6 30042370 30042532 -119474505 + B4 SINE B4 2 170 -122 1 814 455 244 86 24 chr6 30042777 30042952 -119474085 - B3A SINE B2 -20 175 2 1 814 387 224 11 34 chr6 30042954 30043042 -119473995 - PB1D10 SINE Alu -12 105 20 1 814 204 179 0 0 chr6 30043591 30043630 -119473407 + T-rich Low_complexity Low_complexity 1 39 0 1 814 1181 55 7 0 chr6 30043630 30043776 -119473261 - B1_Mus1 SINE Alu 0 148 2 1 814 404 232 190 0 chr6 30043777 30043919 -119473118 + L1MB1 LINE L1 5848 6016 -152 1 814 342 306 105 0 chr6 30044076 30044200 -119472837 + ID_B1 SINE B4 81 217 -7 1 814 342 202 115 0 chr6 30044218 30044322 -119472715 + L1MB1 LINE L1 6032 6147 -42 1 814 326 235 37 0 chr6 30044405 30044486 -119472551 + PB1D7 SINE Alu 21 104 -16 1 814 231 307 0 56 chr6 30045638 30045745 -119471292 + ID_B1 SINE B4 76 176 -48 1 814 435 257 0 0 chr6 30045653 30045762 -119471275 + PB1D9 SINE Alu 7 115 -5 1 814 1418 171 157 40 chr6 30045922 30046318 -119470719 + RMER10A LTR ERVL 1 442 0 1 814 226 345 88 0 chr6 30046399 30046512 -119470525 - L2a LINE L2 -248 3178 3056 1 814 243 88 0 0 chr6 30046536 30046570 -119470467 + (CTTA)n Simple_repeat Simple_repeat 2 35 0 1 814 732 200 37 0 chr6 30046574 30046709 -119470328 - B1_Mur2 SINE Alu -7 142 3 1 814 299 231 0 30 chr6 30046795 30046862 -119470175 + B1F SINE Alu 13 77 -72 1 814 348 298 0 12 chr6 30046859 30046944 -119470093 + PB1D10 SINE Alu 6 89 -28 1 814 748 171 32 198 chr6 30047216 30047464 -119469573 - B3 SINE B2 -7 209 3 1 814 489 206 52 132 chr6 30047464 30047676 -119469361 + Tigger7 DNA MER2_type 2297 2491 0 1 814 274 130 115 30 chr6 30047718 30047789 -119469248 - MTD LTR MaLR -13 406 309 1 814 456 220 34 8 chr6 30047901 30048010 -119469027 - B1_Mur2 SINE Alu 0 120 13 1 814 546 278 68 21 chr6 30048034 30048225 -119468812 - MTD LTR MaLR -209 210 11 1 814 673 263 96 5 chr6 30048957 30049156 -119467881 + ID_B1 SINE B4 2 218 -6 1 814 1145 28 21 0 chr6 30049315 30049458 -119467579 + B1_Mus2 SINE Alu 1 146 -1 1 814 189 0 0 0 chr6 30049461 30049482 -119467555 + (A)n Simple_repeat Simple_repeat 1 21 0 1 814 222 212 162 29 chr6 30049924 30049992 -119467045 + B4A SINE B4 1 77 -215 1 814 413 141 196 0 chr6 30050342 30050434 -119466603 + B1_Mus1 SINE Alu 39 148 0 1 814 201 133 0 0 chr6 30050434 30050464 -119466573 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1 814 754 191 29 0 chr6 30052658 30052794 -119464243 - B1_Mus2 SINE Alu -7 140 1 1 814 232 143 0 0 chr6 30052859 30052894 -119464143 - U2 snRNA snRNA -153 35 1 1 814 259 330 10 30 chr6 30053094 30053194 -119463843 + ID_B1 SINE B4 79 176 -48 1 814 259 234 24 83 chr6 30053120 30053204 -119463833 + PB1D10 SINE Alu 23 101 -16 1 814 23 0 0 0 chr6 30053205 30053228 -119463809 + AT_rich Low_complexity Low_complexity 1 23 0 1 814 557 273 0 0 chr6 30053819 30053940 -119463097 + RSINE1 SINE B4 23 143 -22 1 814 929 150 14 105 chr6 30055602 30055811 -119461226 - B2_Mm2 SINE B2 -4 191 2 1 814 697 224 0 0 chr6 30055960 30056094 -119460943 - B1_Mur1 SINE Alu -13 136 3 1 814 265 259 0 0 chr6 30056196 30056250 -119460787 - B3A SINE B2 -144 54 1 1 814 507 278 7 76 chr6 30056431 30056575 -119460462 + ID_B1 SINE B4 84 217 -7 1 814 279 0 0 0 chr6 30056586 30056617 -119460420 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 814 306 0 0 0 chr6 30056617 30056650 -119460387 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 814 594 210 63 28 chr6 30056804 30056946 -119460091 - B1_Mur2 SINE Alu 0 149 3 1 814 333 372 0 0 chr6 30056949 30057027 -119460010 - AluG_3 SINE Alu -91 220 143 1 814 414 232 48 48 chr6 30057267 30057371 -119459666 + B1_Mur1 SINE Alu 21 124 -25 1 814 448 259 134 5 chr6 30057864 30058058 -119458979 + L1MB4 LINE L1 5937 6155 -25 1 814 300 358 67 0 chr6 30058116 30058236 -119458801 + MER5B DNA MER1_type 17 144 -34 1 814 540 0 0 0 chr6 30058252 30058312 -119458725 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 814 366 308 34 52 chr6 30058315 30058471 -119458566 - ID_B1 SINE B4 0 224 80 1 814 307 284 0 47 chr6 30058541 30058626 -119458411 + ID4_ SINE ID 1 81 -2 1 814 366 243 0 0 chr6 30058666 30058736 -119458301 + B4A SINE B4 3 72 -220 1 814 228 35 0 0 chr6 30058760 30058789 -119458248 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 814 223 324 0 27 chr6 30058866 30058939 -119458098 + RSINE1 SINE B4 31 101 -64 1 814 646 146 192 16 chr6 30058991 30059116 -119457921 + B1_Mus2 SINE Alu 1 147 0 1 814 851 86 26 0 chr6 30059198 30059315 -119457722 + PB1D9 SINE Alu 1 120 0 1 814 343 326 165 6 chr6 30059316 30059575 -119457462 + L1M2 LINE L1 5115 5418 -756 1 814 210 216 0 0 chr6 30059626 30059663 -119457374 + G-rich Low_complexity Low_complexity 1 37 0 1 814 818 249 46 20 chr6 30059678 30059875 -119457162 + B3 SINE B2 3 204 -12 1 814 238 271 17 0 chr6 30060008 30060067 -119456970 + B1_Mus2 SINE Alu 15 74 -73 1 814 1204 75 0 0 chr6 30060625 30060771 -119456266 - B1_Mus1 SINE Alu 0 148 3 1 814 575 285 34 28 chr6 30061100 30061178 -119455859 + B4A SINE B4 3 81 -211 1 814 282 292 79 70 chr6 30061178 30061292 -119455745 + PB1D7 SINE Alu 1 115 -5 1 814 953 264 61 44 chr6 30061492 30061711 -119455326 - MER2 DNA MER2_type -35 310 86 1 814 1400 82 11 5 chr6 30061711 30061896 -119455141 - B2_Mm2 SINE B2 -8 187 2 1 814 953 264 61 44 chr6 30061896 30061973 -119455064 - MER2 DNA MER2_type -260 85 9 1 814 440 195 61 0 chr6 30062395 30062477 -119454560 - ID_B1 SINE B4 -57 167 81 1 814 715 223 38 127 chr6 30062474 30062710 -119454327 - B3 SINE B2 0 216 2 1 814 320 341 0 0 chr6 30063128 30063210 -119453827 + PB1D10 SINE Alu 2 83 -34 1 814 186 43 0 0 chr6 30063248 30063271 -119453766 + (T)n Simple_repeat Simple_repeat 1 23 0 1 814 270 0 0 0 chr6 30063735 30063765 -119453272 + (T)n Simple_repeat Simple_repeat 1 30 0 2 814 1114 43 42 21 chr6 30063779 30063922 -119453115 - B1_Mus2 SINE Alu 0 147 2 2 814 21 36 0 0 chr6 30063931 30063959 -119453078 + AT_rich Low_complexity Low_complexity 1 28 0 2 814 458 228 74 17 chr6 30065468 30065607 -119451430 + B1F1 SINE Alu 2 150 0 2 814 793 229 16 42 chr6 30065614 30065805 -119451232 + B3A SINE B2 5 190 -8 2 814 231 333 14 14 chr6 30066620 30066693 -119450344 + ID4_ SINE ID 2 74 -9 2 814 669 153 9 0 chr6 30067584 30067695 -119449342 + PB1D9 SINE Alu 9 120 0 2 814 232 250 210 12 chr6 30068639 30068720 -119448317 - PB1D10 SINE Alu -14 103 7 2 814 348 375 28 0 chr6 30069465 30069641 -119447396 + MIR SINE MIR 60 240 -22 2 814 258 56 0 0 chr6 30069939 30069975 -119447062 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2 814 215 312 80 35 chr6 30070050 30070163 -119446874 + MIRb SINE MIR 41 158 -110 2 814 200 244 26 0 chr6 30070254 30070332 -119446705 + CT-rich Low_complexity Low_complexity 2 81 0 2 814 457 211 28 140 chr6 30070365 30070443 -119446594 - B1F SINE Alu -18 131 52 2 814 1098 75 0 27 chr6 30070443 30070593 -119446444 - B1_Mus2 SINE Alu 0 147 2 2 814 457 211 28 140 chr6 30070593 30070657 -119446380 - B1F SINE Alu -98 51 5 2 814 191 157 0 19 chr6 30072763 30072815 -119444222 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 814 30 0 0 0 chr6 30072834 30072864 -119444173 + AT_rich Low_complexity Low_complexity 1 30 0 2 814 1239 48 0 0 chr6 30072866 30073013 -119444024 - B1_Mus1 SINE Alu 0 148 2 2 814 24 0 0 0 chr6 30073032 30073056 -119443981 + AT_rich Low_complexity Low_complexity 1 24 0 2 814 285 255 36 89 chr6 30073269 30073381 -119443656 + MT2B LTR ERVL 173 278 -323 2 814 808 122 0 16 chr6 30073284 30073409 -119443628 + B1_Mus2 SINE Alu 25 147 0 2 814 578 203 111 15 chr6 30073491 30073626 -119443411 + B4 SINE B4 53 200 -92 2 814 637 251 130 34 chr6 30073764 30073941 -119443096 - B3 SINE B2 -3 195 2 2 814 287 314 0 54 chr6 30073962 30074036 -119443001 - ID4_ SINE ID -9 74 5 2 814 1600 32 5 0 chr6 30074038 30074225 -119442812 - B2_Mm1t SINE B2 -4 189 2 2 814 305 276 8 125 chr6 30074242 30074362 -119442675 - PB1 SINE Alu -1 126 21 2 814 252 288 0 15 chr6 30074412 30074479 -119442558 - B1F SINE Alu -72 77 12 2 814 261 0 0 0 chr6 30074784 30074813 -119442224 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 814 1184 82 0 0 chr6 30075237 30075384 -119441653 + B1_Mus2 SINE Alu 1 147 0 2 814 29 0 0 0 chr6 30075399 30075428 -119441609 + AT_rich Low_complexity Low_complexity 1 29 0 2 814 1284 34 0 0 chr6 30076705 30076852 -119440185 + B1_Mus2 SINE Alu 1 147 0 2 814 22 0 0 0 chr6 30077071 30077093 -119439944 + GC_rich Low_complexity Low_complexity 1 22 0 2 814 470 118 204 0 chr6 30077229 30077322 -119439715 + PB1D9 SINE Alu 1 112 -8 2 814 335 292 61 9 chr6 30078170 30078284 -119438753 + PB1 SINE Alu 1 120 -7 2 814 189 0 0 0 chr6 30079598 30079619 -119437418 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2 814 356 315 128 11 chr6 30079660 30079840 -119437197 - L1ME4a LINE L1 -186 5938 5738 2 814 266 154 13 0 chr6 30079846 30079924 -119437113 + T-rich Low_complexity Low_complexity 1 79 0 2 814 1020 101 0 7 chr6 30079934 30080073 -119436964 - B1_Mus2 SINE Alu -8 139 2 2 814 269 281 11 79 chr6 30080332 30080421 -119436616 - ID_B1 SINE B4 0 224 142 2 814 396 262 80 27 chr6 30080603 30080753 -119436284 - PB1D7 SINE Alu 0 149 4 2 814 237 262 270 32 chr6 30080647 30080773 -119436264 - ID_B1 SINE B4 -2 222 67 2 814 193 57 0 54 chr6 30080776 30080813 -119436224 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 2 814 779 180 7 7 chr6 30080858 30080998 -119436039 - B1_Mus1 SINE Alu 0 148 9 2 814 336 269 50 143 chr6 30080892 30081074 -119435963 - MT2B LTR ERVL -337 264 100 2 814 829 180 29 0 chr6 30081088 30081227 -119435810 - B1_Mus1 SINE Alu 0 148 6 2 814 274 136 0 0 chr6 30081283 30081327 -119435710 - ID_B1 SINE B4 0 224 181 2 814 23 0 0 0 chr6 30081339 30081362 -119435675 + AT_rich Low_complexity Low_complexity 1 23 0 2 814 489 165 72 22 chr6 30081887 30082005 -119435032 - B1_Mur4 SINE Alu -2 148 5 2 814 564 62 0 0 chr6 30082362 30082443 -119434594 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 814 217 355 87 57 chr6 30082610 30082840 -119434197 + MIRb SINE MIR 27 263 -5 2 814 345 272 122 22 chr6 30083110 30083249 -119433788 + RSINE1 SINE B4 2 154 -11 2 814 686 210 29 14 chr6 30083273 30083413 -119433624 + B1F2 SINE Alu 1 142 -7 2 814 2120 59 3 56 chr6 30083859 30084164 -119432873 - L1_Mus2 LINE L1 -9 6557 6269 2 814 1409 89 16 0 chr6 30084447 30084637 -119432400 + B2_Mm2 SINE B2 1 193 -2 2 814 689 152 27 0 chr6 30084646 30084758 -119432279 + PB1D9 SINE Alu 1 115 -5 2 814 387 283 57 32 chr6 30086072 30086196 -119430841 + B1F SINE Alu 6 132 -17 2 814 273 256 0 47 chr6 30086216 30086302 -119430735 + GA-rich Low_complexity Low_complexity 4 85 0 2 814 1182 97 40 84 chr6 30088126 30088154 -119428883 - B2_Mm2 SINE B2 0 195 169 2 814 1395 65 16 36 chr6 30088154 30088346 -119428691 + B2_Mm2 SINE B2 2 189 -6 2 814 1182 97 40 84 chr6 30088346 30088359 -119428678 - B2_Mm2 SINE B2 -27 168 165 2 814 687 101 240 16 chr6 30088359 30088480 -119428557 + B1_Mus1 SINE Alu 1 148 0 2 814 1182 97 40 84 chr6 30088480 30088639 -119428398 - B2_Mm2 SINE B2 -31 164 4 2 814 491 224 198 8 chr6 30088896 30089022 -119428015 - B1_Mur4 SINE Alu 0 150 1 2 814 785 207 14 0 chr6 30089140 30089285 -119427752 - B1_Mur1 SINE Alu 0 149 3 2 814 252 0 0 0 chr6 30090860 30090888 -119426149 + (A)n Simple_repeat Simple_repeat 1 28 0 2 814 232 276 56 33 chr6 30090991 30091081 -119425956 + RLTR25B LTR ERVK 406 497 -531 2 814 713 174 16 0 chr6 30091008 30091129 -119425908 + B1_Mus2 SINE Alu 25 147 0 2 814 897 200 68 10 chr6 30092224 30092416 -119424621 - B3 SINE B2 -9 207 5 2 814 599 191 68 8 chr6 30092564 30092696 -119424341 + B1F SINE Alu 1 140 -9 2 814 391 212 25 0 chr6 30093051 30093131 -119423906 - ID4_ SINE ID -1 82 1 2 814 223 249 49 33 chr6 30093476 30093573 -119423464 - MIRb SINE MIR -27 241 106 2 814 1802 71 0 8 chr6 30093886 30094127 -119422910 - 7SK RNA RNA -92 239 1 2 814 315 289 21 32 chr6 30095073 30095166 -119421871 + B3A SINE B2 73 164 -34 2 814 310 279 106 8 chr6 30095200 30095323 -119421714 - L2 LINE L2 -785 2634 2500 2 814 239 175 35 17 chr6 30095689 30095747 -119421290 - PB1 SINE Alu 0 127 69 2 814 279 261 145 132 chr6 30095761 30095852 -119421185 - ID_B1 SINE B4 -2 222 124 2 814 1426 73 5 20 chr6 30095852 30096048 -119420989 - B2_Mm1a SINE B2 0 193 1 2 814 338 0 24 0 chr6 30096050 30096092 -119420945 + (TTA)n Simple_repeat Simple_repeat 3 45 0 2 814 1793 77 45 0 chr6 30096092 30096339 -119420698 - L1_Mus2 LINE L1 -18 6548 6291 2 814 336 191 203 167 chr6 30096339 30096380 -119420657 - B1F2 SINE Alu -117 32 4 2 814 279 261 145 132 chr6 30096380 30096402 -119420635 - ID_B1 SINE B4 -101 123 63 2 814 255 61 0 0 chr6 30096419 30096452 -119420585 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 814 562 214 0 37 chr6 30096495 30096602 -119420435 - RSINE1 SINE B4 -60 105 3 2 814 407 272 8 50 chr6 30096741 30096861 -119420176 + PB1D7 SINE Alu 5 119 -1 2 814 282 205 24 60 chr6 30097757 30097840 -119419197 - PB1D7 SINE Alu -1 119 40 2 814 347 274 93 9 chr6 30098155 30098262 -119418775 + PB1D10 SINE Alu 2 117 0 2 814 240 35 0 0 chr6 30098765 30098794 -119418243 + (CACG)n Simple_repeat Simple_repeat 1 29 0 2 814 471 323 8 0 chr6 30098796 30098926 -119418111 - RSINE1 SINE B4 -24 141 11 2 814 484 198 9 54 chr6 30098938 30099050 -119417987 - B1_Mur1 SINE Alu -5 144 38 2 814 324 300 128 54 chr6 30099263 30099559 -119417478 - HAL1 LINE L1 -905 1602 1285 2 814 405 284 29 10 chr6 30099750 30099853 -119417184 - PB1D9 SINE Alu -3 117 13 2 814 346 296 0 0 chr6 30099910 30099991 -119417046 - ID4 SINE ID -1 82 2 2 814 254 295 148 59 chr6 30099993 30100094 -119416943 - PB1 SINE Alu 0 127 18 2 814 227 318 0 0 chr6 30100820 30100886 -119416151 + Charlie18a DNA MER1_type 277 342 0 2 814 386 237 82 5 chr6 30101245 30101366 -119415671 + PB1D10 SINE Alu 2 125 -2 2 814 248 231 0 13 chr6 30101969 30102048 -119414989 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 814 258 32 0 0 chr6 30102601 30102632 -119414405 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 814 243 294 67 84 chr6 30104501 30104620 -119412417 - MER102c DNA MER1_type -196 135 19 2 814 432 319 129 20 chr6 30104674 30104821 -119412216 + RSINE1 SINE B4 3 165 0 2 814 260 228 0 0 chr6 30105269 30105326 -119411711 + URR1B DNA MER1_type 169 225 0 2 814 205 0 114 0 chr6 30105457 30105492 -119411545 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 814 268 324 29 0 chr6 30105691 30105796 -119411241 - MIR SINE MIR -131 131 24 2 814 381 271 13 153 chr6 30105926 30106029 -119411008 + ID SINE ID 1 81 -143 2 814 331 295 67 15 chr6 30106029 30106163 -119410874 + B1F1 SINE Alu 1 141 -8 2 814 904 142 57 0 chr6 30106238 30106379 -119410658 + B1_Mur3 SINE Alu 1 149 0 3 814 1256 34 7 0 chr6 30106452 30106598 -119410439 + B1_Mm SINE Alu 1 147 0 3 814 699 214 88 35 chr6 30106655 30106858 -119410179 + B3 SINE B2 1 185 -10 3 814 362 205 274 9 chr6 30106873 30106986 -119410051 + B1_Mur4 SINE Alu 3 145 -5 3 814 374 173 23 58 chr6 30107217 30107303 -119409734 - B1_Mur1 SINE Alu -1 148 66 3 814 377 207 12 12 chr6 30107230 30107313 -119409724 - ID_B1 SINE B4 -9 215 133 3 814 207 0 0 0 chr6 30107568 30107591 -119409446 + (A)n Simple_repeat Simple_repeat 1 23 0 3 814 469 147 242 0 chr6 30107795 30107890 -119409147 + B3A SINE B2 1 118 -80 3 814 351 0 0 0 chr6 30107893 30107932 -119409105 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 814 1248 54 0 0 chr6 30109185 30109332 -119407705 + B1_Mus1 SINE Alu 2 148 0 3 814 201 94 0 0 chr6 30109332 30109364 -119407673 + (A)n Simple_repeat Simple_repeat 1 32 0 3 814 288 219 67 27 chr6 30110626 30110701 -119406336 - ID4_ SINE ID 0 83 6 3 814 379 287 89 84 chr6 30111036 30111082 -119405955 - MER20 DNA MER1_type -5 214 172 3 814 347 250 70 0 chr6 30111082 30111182 -119405855 - PB1D7 SINE Alu -13 107 1 3 814 379 287 89 84 chr6 30111182 30111348 -119405689 - MER20 DNA MER1_type -48 171 1 3 814 840 65 181 24 chr6 30111929 30112056 -119404981 + B1_Mm SINE Alu 1 147 0 3 814 266 224 241 9 chr6 30112179 30112287 -119404750 + ID_B1 SINE B4 25 157 -67 3 814 574 221 90 56 chr6 30112368 30112626 -119404411 + RSINE1 SINE B4 3 269 -23 3 814 795 108 121 15 chr6 30113187 30113319 -119403718 - B1_Mus2 SINE Alu 0 147 2 3 814 1188 75 0 0 chr6 30113773 30113920 -119403117 - B1_Mus1 SINE Alu 0 148 2 3 814 382 241 90 27 chr6 30113921 30114032 -119403005 - B1F SINE Alu -3 146 29 3 814 779 196 7 14 chr6 30114181 30114326 -119402711 + B1_Mur1 SINE Alu 5 148 -1 3 814 357 249 51 25 chr6 30114365 30114499 -119402538 + PB1D7 SINE Alu 11 146 -3 3 814 1472 74 5 0 chr6 30114863 30115053 -119401984 + B2_Mm1a SINE B2 2 192 -1 3 814 31 0 0 0 chr6 30115053 30115084 -119401953 + AT_rich Low_complexity Low_complexity 1 31 0 3 814 30 27 0 0 chr6 30124152 30124189 -119392848 + GC_rich Low_complexity Low_complexity 1 37 0 3 814 215 185 31 0 chr6 30126847 30126912 -119390125 + T-rich Low_complexity Low_complexity 1 67 0 3 814 1151 55 0 20 chr6 30127047 30127196 -119389841 + B1_Mus1 SINE Alu 2 147 -1 3 814 391 212 30 10 chr6 30127614 30127714 -119389323 + PB1D10 SINE Alu 1 102 -15 3 814 300 27 0 0 chr6 30128498 30128535 -119388502 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 814 207 88 0 0 chr6 30128827 30128861 -119388176 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 3 814 796 109 8 8 chr6 30128862 30128991 -119388046 - B1_Mur3 SINE Alu 0 149 21 3 814 240 272 41 112 chr6 30128912 30129082 -119387955 - RLTR25A LTR ERVK -531 572 415 3 814 380 226 46 0 chr6 30129142 30129249 -119387788 + PB1D7 SINE Alu 6 77 -43 3 814 189 326 144 11 chr6 30129308 30129398 -119387639 + MIRc SINE MIR 123 224 -44 3 814 189 0 0 0 chr6 30129398 30129419 -119387618 + (T)n Simple_repeat Simple_repeat 1 21 0 3 814 232 173 0 55 chr6 30131075 30131130 -119385907 - MIRc SINE MIR -115 153 102 3 814 1301 20 0 0 chr6 30132462 30132608 -119384429 - B1_Mus2 SINE Alu 0 147 2 3 814 428 240 106 0 chr6 30132728 30132832 -119384205 + B1_Mur1 SINE Alu 35 149 0 3 814 486 238 38 0 chr6 30132963 30133068 -119383969 - B1F SINE Alu -40 109 1 3 814 330 279 38 9 chr6 30133308 30133413 -119383624 - MIRc SINE MIR -125 143 36 3 814 581 264 198 36 chr6 30133502 30133805 -119383232 - ORR1E LTR MaLR 0 359 8 3 814 227 231 19 0 chr6 30134013 30134065 -119382972 + B1_Mur4 SINE Alu 3 55 -95 3 814 435 198 54 0 chr6 30134065 30134176 -119382861 + (CAGG)n Simple_repeat Simple_repeat 2 118 0 3 814 448 210 10 10 chr6 30134176 30134277 -119382760 + B1_Mur4 SINE Alu 43 143 -7 3 814 776 179 0 27 chr6 30134284 30134433 -119382604 + B1_Mus1 SINE Alu 3 147 -1 3 814 1080 52 0 36 chr6 30135034 30135174 -119381863 + B1_Mus2 SINE Alu 1 135 -12 3 814 183 42 0 0 chr6 30136250 30136274 -119380763 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 814 639 260 89 11 chr6 30136370 30136549 -119380488 - B4A SINE B4 -63 229 37 3 814 243 0 0 0 chr6 30136579 30136606 -119380431 + (T)n Simple_repeat Simple_repeat 1 27 0 3 814 449 259 34 67 chr6 30136703 30136852 -119380185 - ID_B1 SINE B4 0 224 81 3 814 298 331 117 0 chr6 30137585 30137730 -119379307 - MER53 DNA hAT -7 186 25 3 814 251 196 0 0 chr6 30137781 30137827 -119379210 - PB1D10 SINE Alu -49 68 23 3 814 31 26 0 0 chr6 30137846 30137884 -119379153 + AT_rich Low_complexity Low_complexity 1 38 0 3 814 1354 78 10 63 chr6 30137884 30138090 -119378947 - B2_Mm2 SINE B2 0 195 1 3 814 917 149 7 26 chr6 30138091 30138243 -119378794 - B1_Mur3 SINE Alu 0 149 1 3 814 1538 62 5 0 chr6 30138258 30138450 -119378587 - B2_Mm1a SINE B2 0 193 1 3 814 1073 85 170 6 chr6 30138459 30138624 -119378413 - B2_Mm1t SINE B2 0 193 2 3 814 225 0 0 0 chr6 30138792 30138817 -119378220 + (CCA)n Simple_repeat Simple_repeat 3 27 0 3 814 386 214 24 12 chr6 30139837 30139922 -119377115 - PB1D9 SINE Alu 0 120 35 3 814 1265 48 0 0 chr6 30140489 30140636 -119376401 - B1_Mus2 SINE Alu 0 147 1 3 814 903 302 105 0 chr6 30141574 30141888 -119375149 + MER21B LTR ERV1 373 719 -144 3 814 484 348 172 20 chr6 30142008 30142306 -119374731 + LTR73 LTR ERV1 23 368 -204 3 814 906 223 26 49 chr6 30142306 30142532 -119374505 - ID_B1 SINE B4 -2 222 2 3 814 484 348 172 20 chr6 30142532 30142693 -119374344 + LTR73 LTR ERV1 369 552 -20 3 814 529 189 9 0 chr6 30142732 30142838 -119374199 + B1F1 SINE Alu 43 149 0 3 814 528 16 0 0 chr6 30143064 30143125 -119373912 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 814 21 36 0 0 chr6 30143147 30143175 -119373862 + AT_rich Low_complexity Low_complexity 1 28 0 3 814 1319 20 0 0 chr6 30143180 30143326 -119373711 - B1_Mm SINE Alu -1 146 1 3 814 446 186 69 0 chr6 30143496 30143598 -119373439 - MLT1A1 LTR MaLR 0 408 300 3 814 702 254 0 0 chr6 30143863 30144001 -119373036 - RSINE1 SINE B4 -25 140 3 3 814 963 32 0 0 chr6 30144028 30144151 -119372886 + B1_Mus1 SINE Alu 25 147 -1 3 814 368 273 43 79 chr6 30144030 30144169 -119372868 + B4A SINE B4 111 244 -48 3 814 395 305 77 22 chr6 30144183 30144479 -119372558 - L1MC4a LINE L1 -341 7541 7214 3 814 333 332 36 1 chr6 30144582 30144746 -119372291 - L1MC4a LINE L1 -895 6890 6694 3 814 1227 35 7 0 chr6 30144746 30144891 -119372146 + B1_Mus2 SINE Alu 1 146 -1 3 814 241 275 7 7 chr6 30144896 30145035 -119372002 + ORR1B1-int LTR MaLR 616 754 -755 3 814 986 44 0 15 chr6 30144938 30145075 -119371962 + B1_Mus1 SINE Alu 13 147 -1 3 814 350 91 0 18 chr6 30145096 30145152 -119371885 + (GAA)n Simple_repeat Simple_repeat 3 57 0 3 814 625 214 0 15 chr6 30145247 30145514 -119371523 + (TG)n Simple_repeat Simple_repeat 1 262 0 3 815 362 66 33 0 chr6 30146810 30146871 -119370166 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 3 815 372 242 0 0 chr6 30148335 30148430 -119368607 + CT-rich Low_complexity Low_complexity 80 174 0 3 815 283 222 26 77 chr6 30148545 30148623 -119368414 - PB1D10 SINE Alu -23 94 21 3 815 504 343 96 34 chr6 30148636 30149052 -119367985 - L1MB4 LINE L1 -43 6137 5696 3 815 351 276 191 0 chr6 30149156 30149261 -119367776 - RSINE1 SINE B4 -33 132 8 3 815 426 309 18 0 chr6 30149270 30149380 -119367657 - PB1D10 SINE Alu -1 116 5 3 815 585 137 19 19 chr6 30149422 30149526 -119367511 + B1_Mur1 SINE Alu 45 148 -1 3 815 923 151 57 81 chr6 30149549 30149758 -119367279 + B3 SINE B2 3 206 -10 3 815 411 117 0 0 chr6 30149840 30149900 -119367137 - PB1D9 SINE Alu -8 112 53 3 815 788 208 47 5 chr6 30150040 30150073 -119366964 - B3 SINE B2 -15 201 164 3 815 246 62 0 0 chr6 30150073 30150105 -119366932 + (TTA)n Simple_repeat Simple_repeat 2 33 0 3 815 788 208 47 5 chr6 30150105 30150264 -119366773 - B3 SINE B2 -53 163 2 3 815 198 167 0 0 chr6 30150372 30150408 -119366629 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 3 815 1159 75 0 0 chr6 30150711 30150858 -119366179 + B1_Mus1 SINE Alu 2 148 0 3 815 491 77 39 0 chr6 30150865 30150943 -119366094 + L1Md_F2 LINE L1 6500 6580 -2 3 815 371 320 64 64 chr6 30150993 30151040 -119365997 + ORR1D1 LTR MaLR 107 152 -222 3 815 1010 163 0 0 chr6 30151040 30151187 -119365850 + B1_Mur3 SINE Alu 1 147 -2 3 815 1057 142 199 0 chr6 30151194 30151370 -119365667 + B3 SINE B2 2 212 -4 3 815 371 320 64 64 chr6 30151370 30151581 -119365456 + ORR1D1 LTR MaLR 160 373 -1 3 815 784 216 70 45 chr6 30151584 30151826 -119365211 - B4A SINE B4 -44 248 1 3 815 239 284 144 12 chr6 30151843 30151993 -119365044 - L1MB4 LINE L1 -2313 3833 3661 3 815 358 148 37 0 chr6 30151993 30152074 -119364963 + L1Md_A LINE L1 6497 6580 -2 3 815 230 333 164 48 chr6 30152074 30152217 -119364820 - L1MB4 LINE L1 -2486 3660 3491 3 815 824 219 14 77 chr6 30152217 30152439 -119364598 + B3 SINE B2 1 208 -8 3 815 230 333 164 48 chr6 30152439 30152601 -119364436 - L1MB4 LINE L1 -2656 3490 3324 3 815 1196 68 0 0 chr6 30152623 30152770 -119364267 - B1_Mus2 SINE Alu 0 147 1 3 815 952 185 48 0 chr6 30152773 30152962 -119364075 - B3A SINE B2 0 198 1 3 815 1550 103 60 138 chr6 30153025 30153373 -119363664 - ORR1A4 LTR MaLR -8 321 1 3 815 404 218 13 0 chr6 30153570 30153648 -119363389 - ID2 SINE ID -1 82 4 3 815 1371 101 37 0 chr6 30153677 30153865 -119363172 + B2_Mm2 SINE B2 1 195 0 4 815 1170 88 0 0 chr6 30153877 30154024 -119363013 + B1_Mus1 SINE Alu 1 147 -1 4 815 237 65 0 0 chr6 30154026 30154057 -119362980 + (GGAGAA)n Simple_repeat Simple_repeat 3 33 0 4 815 512 172 120 3 chr6 30154079 30154199 -119362838 + B1_Mur4 SINE Alu 7 136 -11 4 815 390 235 104 38 chr6 30154202 30154308 -119362729 - PB1D10 SINE Alu -2 115 3 4 815 180 0 0 0 chr6 30154369 30154389 -119362648 + (TAA)n Simple_repeat Simple_repeat 3 22 0 4 815 23 0 0 0 chr6 30154392 30154415 -119362622 + AT_rich Low_complexity Low_complexity 1 23 0 4 815 509 278 0 16 chr6 30154476 30154604 -119362433 - RSINE1 SINE B4 -13 152 27 4 815 207 0 0 0 chr6 30155371 30155394 -119361643 + (T)n Simple_repeat Simple_repeat 1 23 0 4 815 1203 48 14 0 chr6 30155394 30155540 -119361497 - B1_Mus1 SINE Alu 0 148 1 4 815 272 48 0 23 chr6 30155555 30155598 -119361439 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 815 296 258 59 49 chr6 30156259 30156361 -119360676 + MT2B LTR ERVL 153 255 -346 4 815 621 150 0 13 chr6 30156283 30156408 -119360629 + B1_Mur3 SINE Alu 28 148 -1 4 815 959 170 85 25 chr6 30156421 30156620 -119360417 - B3 SINE B2 -5 211 1 4 815 285 51 0 0 chr6 30156807 30156846 -119360191 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 4 815 1241 35 0 0 chr6 30156848 30156989 -119360048 - B1_Mm SINE Alu -6 141 1 4 815 1028 95 0 45 chr6 30156999 30157153 -119359884 - B1_Mus1 SINE Alu 0 148 2 4 815 26 30 0 0 chr6 30157204 30157237 -119359800 + AT_rich Low_complexity Low_complexity 1 33 0 4 815 3894 111 72 14 chr6 30157238 30157743 -119359294 + Lx2B LINE L1 6343 6865 -135 4 815 207 0 0 0 chr6 30157743 30157766 -119359271 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 4 815 3894 111 72 14 chr6 30157766 30157881 -119359156 + Lx2B LINE L1 6866 6998 -2 4 815 249 231 121 15 chr6 30158015 30158081 -119358956 - ID4_ SINE ID 0 83 11 4 815 2080 162 40 141 chr6 30158265 30158390 -119358647 + RLTR41 LTR ERV1 1 128 -318 4 815 315 0 0 0 chr6 30158390 30158425 -119358612 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 815 2080 162 40 141 chr6 30158425 30158536 -119358501 + RLTR41 LTR ERV1 129 194 -252 4 815 1277 35 114 17 chr6 30158536 30158712 -119358325 - B2_Mm2 SINE B2 0 195 3 4 815 2080 162 40 141 chr6 30158712 30158970 -119358067 + RLTR41 LTR ERV1 195 446 0 4 815 1122 131 96 0 chr6 30159186 30159384 -119357653 - URR1B DNA MER1_type 0 225 9 4 815 443 228 158 45 chr6 30159474 30159607 -119357430 - B1_Mur2 SINE Alu 0 149 2 4 815 210 71 0 0 chr6 30159616 30159644 -119357393 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 815 2651 46 68 0 chr6 30160009 30160333 -119356704 + ORR1A0 LTR MaLR 1 346 0 4 815 180 0 0 0 chr6 30164377 30164397 -119352640 + (A)n Simple_repeat Simple_repeat 1 20 0 4 815 361 94 0 0 chr6 30165243 30165296 -119351741 - B2_Mm2 SINE B2 -142 53 1 4 815 1090 97 0 0 chr6 30165878 30166033 -119351004 + B2_Mm2 SINE B2 1 155 -40 4 815 321 260 154 54 chr6 30166162 30166292 -119350745 - ID_B1 SINE B4 0 224 82 4 815 1314 86 23 0 chr6 30166308 30166483 -119350554 + B2_Mm2 SINE B2 3 181 -14 4 815 400 77 29 2 chr6 30166511 30166614 -119350423 + B2_Mm2 SINE B2 47 188 -7 4 815 316 215 71 158 chr6 30166669 30166731 -119350306 - B3A SINE B2 -82 116 54 4 815 767 68 246 0 chr6 30166731 30166849 -119350188 - B1_Mm SINE Alu 0 147 1 4 815 316 215 71 158 chr6 30166849 30166913 -119350124 - B3A SINE B2 -145 53 1 4 815 3977 52 6 4 chr6 30166941 30167426 -119349611 - L1Md_F2 LINE L1 -1 6581 6096 4 815 24 0 0 0 chr6 30167430 30167454 -119349583 + AT_rich Low_complexity Low_complexity 1 24 0 4 815 411 288 90 36 chr6 30167707 30167873 -119349164 - ID_B1 SINE B4 -21 203 29 4 815 622 161 27 0 chr6 30167882 30167994 -119349043 + B1_Mur3 SINE Alu 29 143 -6 4 815 620 188 114 0 chr6 30168094 30168243 -119348794 + URR1A DNA MER1_type 55 220 -6 4 815 241 255 0 0 chr6 30168503 30168554 -119348483 - B4 SINE B4 -241 51 1 4 815 1645 123 250 73 chr6 30168597 30168993 -119348044 + RMER4A LTR ERVK 1 466 0 4 815 351 149 13 13 chr6 30168993 30169068 -119347969 - PB1D9 SINE Alu -15 105 31 4 815 1415 89 16 0 chr6 30169172 30169362 -119347675 - B2_Mm2 SINE B2 -1 194 2 4 815 468 176 139 0 chr6 30169545 30169653 -119347384 + ORR1D1 LTR MaLR 1 123 -251 4 815 773 128 17 0 chr6 30170011 30170128 -119346909 + PB1D9 SINE Alu 2 120 0 4 815 516 183 33 42 chr6 30171503 30171623 -119345414 + PB1D9 SINE Alu 1 119 -1 4 815 210 247 39 52 chr6 30171958 30172035 -119345002 - B3A SINE B2 -122 76 1 4 815 468 51 0 0 chr6 30172232 30172291 -119344746 + (TCCC)n Simple_repeat Simple_repeat 2 60 0 4 815 270 0 0 0 chr6 30172515 30172545 -119344492 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 815 314 146 145 12 chr6 30172608 30172691 -119344346 + RLTR11A2 LTR ERVK 1 94 -433 4 815 729 141 16 0 chr6 30172695 30172816 -119344221 + RLTR11A2 LTR ERVK 384 506 -21 4 815 669 201 155 16 chr6 30172849 30173036 -119344001 - B3 SINE B2 -3 213 1 4 815 339 256 0 1 chr6 30173205 30173281 -119343756 + B1F SINE Alu 62 136 -13 4 815 1370 62 23 6 chr6 30173421 30173598 -119343439 + B2_Mm2 SINE B2 2 181 -14 4 815 1152 75 0 0 chr6 30173611 30173758 -119343279 - B1_Mm SINE Alu 0 147 1 4 815 21 57 0 0 chr6 30173758 30173793 -119343244 + AT_rich Low_complexity Low_complexity 1 35 0 4 815 279 233 104 104 chr6 30174083 30174198 -119342839 + MER20 DNA MER1_type 30 144 -75 4 815 686 186 8 8 chr6 30174198 30174328 -119342709 + B3 SINE B2 1 130 -86 4 815 321 240 13 0 chr6 30174632 30174707 -119342330 + ID2 SINE ID 8 83 0 4 815 250 354 71 0 chr6 30174767 30174880 -119342157 + MER3 DNA MER1_type 3 123 -86 4 815 429 227 63 63 chr6 30175286 30175413 -119341624 + ID_B1 SINE B4 1 127 -97 4 815 210 304 48 29 chr6 30175438 30175543 -119341494 + PB1D7 SINE Alu 2 108 -12 4 815 204 97 0 0 chr6 30175548 30175579 -119341458 + (CAA)n Simple_repeat Simple_repeat 1 31 0 4 815 594 212 72 7 chr6 30175691 30175829 -119341208 + B1_Mur3 SINE Alu 3 149 0 4 815 532 205 136 57 chr6 30175899 30176075 -119340962 + B3A SINE B2 7 196 -2 4 815 317 138 13 34 chr6 30176275 30176342 -119340695 - B2_Mm2 SINE B2 -82 116 46 4 815 981 121 7 0 chr6 30176394 30176543 -119340494 - B2_Mm1t SINE B2 -41 152 3 4 815 298 244 0 99 chr6 30176543 30176628 -119340409 - PB1D10 SINE Alu -41 76 1 4 815 618 139 0 38 chr6 30176721 30176826 -119340211 + B2_Mm2 SINE B2 2 102 -93 4 815 579 93 31 0 chr6 30176916 30177013 -119340024 + B2_Mm2 SINE B2 96 195 0 4 815 923 247 43 43 chr6 30177713 30177971 -119339066 + B4 SINE B4 14 271 -21 4 815 442 200 252 9 chr6 30178104 30178215 -119338822 + B1F2 SINE Alu 1 138 -11 4 815 406 204 43 0 chr6 30178592 30178685 -119338352 + ORR1C2 LTR MaLR 251 347 -37 4 815 245 57 31 172 chr6 30178734 30178798 -119338239 - B1_Mus2 SINE Alu 0 147 93 4 815 207 0 0 0 chr6 30179598 30179621 -119337416 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 4 815 545 125 222 48 chr6 30179627 30179753 -119337284 + B1_Mus1 SINE Alu 1 148 0 4 815 845 89 0 8 chr6 30179807 30179932 -119337105 + (TTTCC)n Simple_repeat Simple_repeat 2 125 0 4 815 210 71 0 0 chr6 30179932 30179960 -119337077 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 815 746 234 33 38 chr6 30180289 30180536 -119336501 - ORR1E LTR MaLR -144 230 1 4 815 255 329 0 27 chr6 30181021 30181096 -119335941 - ID4 SINE ID -6 77 5 4 815 741 234 0 14 chr6 30181126 30181273 -119335764 + B1_Mur1 SINE Alu 5 149 0 4 815 1049 237 10 5 chr6 30181275 30181483 -119335554 + B3 SINE B2 2 210 -6 4 815 1179 128 31 21 chr6 30181516 30181708 -119335329 + B2_Mm2 SINE B2 2 195 0 4 815 606 157 8 50 chr6 30182064 30182185 -119334852 + B1_Mm SINE Alu 23 138 -9 4 815 244 267 34 103 chr6 30182088 30182205 -119334832 + MT2B LTR ERVL 198 306 -295 4 815 547 193 69 62 chr6 30182252 30182396 -119334641 + B1_Mur4 SINE Alu 6 150 0 4 815 1298 108 11 0 chr6 30182459 30182645 -119334392 + B2_Mm1t SINE B2 1 188 -5 4 815 623 148 104 0 chr6 30183315 30183430 -119333607 - B3 SINE B2 -86 130 4 4 815 198 0 0 0 chr6 30183438 30183460 -119333577 + (T)n Simple_repeat Simple_repeat 1 22 0 4 815 1628 42 0 0 chr6 30183474 30183666 -119333371 - B2_Mm1a SINE B2 0 193 2 4 815 269 367 18 18 chr6 30183672 30183783 -119333254 - PB1D10 SINE Alu -6 111 1 4 815 542 195 102 0 chr6 30183931 30184049 -119332988 + B1_Mus2 SINE Alu 11 140 -7 4 815 288 176 167 13 chr6 30184068 30184164 -119332873 - MTC LTR MaLR -300 107 3 4 815 402 213 71 36 chr6 30184182 30184294 -119332743 - B3A SINE B2 -81 117 2 4 815 252 59 0 0 chr6 30184316 30184350 -119332687 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 815 752 55 264 0 chr6 30184350 30184460 -119332577 - B1_Mus1 SINE Alu -9 139 1 4 815 728 111 0 0 chr6 30184605 30184722 -119332315 - BC1_Mm scRNA scRNA -35 117 1 4 815 313 229 24 24 chr6 30184835 30184920 -119332117 + RLTR25A LTR ERVK 488 572 -531 4 815 410 197 24 49 chr6 30184845 30184857 -119332180 + ID_B1 SINE B4 104 222 -1 4 815 764 46 18 9 chr6 30184857 30184967 -119332070 + B1_Mus2 SINE Alu 37 147 0 4 815 413 221 101 13 chr6 30185394 30185532 -119331505 - B3 SINE B2 -6 187 35 5 815 189 0 0 0 chr6 30185585 30185606 -119331431 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 5 815 550 233 22 29 chr6 30185606 30185743 -119331294 - B1_Mur3 SINE Alu -12 137 2 5 815 1673 21 0 11 chr6 30185905 30186095 -119330942 - B2_Mm1a SINE B2 -5 188 1 5 815 1013 194 45 5 chr6 30186366 30186568 -119330469 + B3 SINE B2 1 210 -6 5 815 1250 34 0 0 chr6 30187306 30187452 -119329585 - B1_Mus1 SINE Alu 0 148 3 5 815 748 21 0 0 chr6 30187483 30187579 -119329458 + L1Md_T LINE L1 6487 6582 0 5 815 274 316 92 0 chr6 30187700 30187798 -119329239 - PB1D10 SINE Alu -7 110 4 5 815 393 22 0 0 chr6 30187983 30188029 -119329008 + (A)n Simple_repeat Simple_repeat 1 46 0 5 815 725 295 171 16 chr6 30188054 30188433 -119328604 + RCHARR1 DNA MER1_type 4 441 -533 5 815 1336 211 70 0 chr6 30188424 30188780 -119328257 + RCHARR1 DNA MER1_type 551 931 -43 5 815 316 263 86 17 chr6 30188788 30188904 -119328133 + B3A SINE B2 2 125 -73 5 815 873 48 8 46 chr6 30188969 30189099 -119327938 + B1_Mus1 SINE Alu 24 148 0 5 815 814 151 0 14 chr6 30189139 30189280 -119327757 + B1_Mur2 SINE Alu 10 148 -1 5 815 245 172 94 0 chr6 30189797 30189861 -119327176 - PB1D9 SINE Alu -8 112 43 5 815 473 236 133 24 chr6 30190723 30190888 -119326149 - B3A SINE B2 -14 184 2 5 815 362 278 133 28 chr6 30191005 30191216 -119325821 - B4A SINE B4 -59 233 1 5 815 798 191 7 7 chr6 30192842 30192990 -119324047 - B1_Mur4 SINE Alu 0 150 3 5 815 1014 135 48 21 chr6 30194126 30194315 -119322722 - B2_Mm2 SINE B2 0 195 2 5 815 531 226 0 31 chr6 30194425 30194553 -119322484 + B1_Mur1 SINE Alu 6 129 -20 5 815 533 244 281 26 chr6 30194688 30194991 -119322046 + Lx8 LINE L1 6682 7061 -412 5 815 243 0 0 0 chr6 30195413 30195440 -119321597 + (A)n Simple_repeat Simple_repeat 1 27 0 5 815 632 214 107 23 chr6 30195488 30195665 -119321372 + B3A SINE B2 3 194 -4 5 815 725 245 55 60 chr6 30195699 30195916 -119321121 + B3 SINE B2 1 216 0 5 815 922 114 18 29 chr6 30196497 30196668 -119320369 + B2_Mm2 SINE B2 3 171 -24 5 815 291 222 16 0 chr6 30196750 30196813 -119320224 - ID4_ SINE ID -17 66 3 5 815 189 0 0 0 chr6 30197384 30197405 -119319632 + (A)n Simple_repeat Simple_repeat 1 21 0 5 815 1244 48 0 0 chr6 30197569 30197715 -119319322 + B1_Mus1 SINE Alu 2 147 -1 5 815 264 248 58 94 chr6 30198012 30198150 -119318887 + MIR3 SINE MIR 53 185 -23 5 815 273 271 99 50 chr6 30198613 30198714 -119318323 - PB1D9 SINE Alu -3 117 12 5 815 22 35 0 0 chr6 30199562 30199591 -119317446 + AT_rich Low_complexity Low_complexity 1 29 0 5 815 333 228 48 48 chr6 30199593 30199676 -119317361 + ID4_ SINE ID 1 83 0 5 815 513 0 0 0 chr6 30199731 30199788 -119317249 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 815 511 192 0 55 chr6 30199789 30199899 -119317138 - B1_Mus1 SINE Alu -7 141 38 5 815 518 206 13 78 chr6 30200497 30200650 -119316387 - B1_Mur1 SINE Alu -6 143 1 5 815 1206 54 0 0 chr6 30200782 30200929 -119316108 + B1_Mus2 SINE Alu 1 147 0 5 815 408 306 9 0 chr6 30201161 30201272 -119315765 - PB1D10 SINE Alu -1 116 5 5 815 415 326 79 17 chr6 30201349 30201527 -119315510 - B3A SINE B2 -9 189 1 5 815 824 204 0 7 chr6 30201883 30202031 -119315006 - B1_Mur3 SINE Alu -1 148 2 5 815 342 339 8 42 chr6 30202076 30202196 -119314841 + B3 SINE B2 1 116 -100 5 815 1858 241 209 36 chr6 30202206 30202933 -119314104 + Lx8 LINE L1 6239 7091 -382 5 815 1170 126 22 16 chr6 30203050 30203235 -119313802 + B2_Mm2 SINE B2 4 189 -6 5 815 261 128 0 0 chr6 30203324 30203371 -119313666 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 815 365 102 0 17 chr6 30204053 30204113 -119312924 + (TCCC)n Simple_repeat Simple_repeat 1 59 0 5 815 1476 60 38 0 chr6 30204563 30204748 -119312289 - B2_Mm2 SINE B2 -3 192 1 5 815 632 192 131 0 chr6 30204966 30205096 -119311941 - B1_Mus1 SINE Alu 0 148 2 5 815 1450 84 5 0 chr6 30205137 30205328 -119311709 - B2_Mm1a SINE B2 0 193 2 5 815 993 48 48 0 chr6 30205522 30205648 -119311389 + B1_Mus2 SINE Alu 5 136 -11 5 815 26 0 0 0 chr6 30205648 30205674 -119311363 + GC_rich Low_complexity Low_complexity 1 26 0 5 815 435 224 130 9 chr6 30205708 30205816 -119311221 + B1_Mur2 SINE Alu 10 130 -19 5 815 462 194 45 27 chr6 30205989 30206100 -119310937 - ID_B1 SINE B4 -7 217 105 5 815 254 336 125 0 chr6 30207191 30207295 -119309742 - PB1 SINE Alu -10 117 1 5 815 381 260 15 46 chr6 30207202 30207318 -119309719 - ID_B1 SINE B4 -49 175 68 5 815 627 174 0 0 chr6 30207326 30207424 -119309613 - B3 SINE B2 -108 108 11 5 815 348 24 0 0 chr6 30207424 30207465 -119309572 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 815 31 26 0 0 chr6 30207468 30207506 -119309531 + AT_rich Low_complexity Low_complexity 1 38 0 5 815 329 237 41 51 chr6 30208156 30208254 -119308783 - PB1D10 SINE Alu -17 100 4 5 815 450 241 18 18 chr6 30208276 30208390 -119308647 - PB1 SINE Alu -10 117 4 5 815 219 265 202 64 chr6 30208397 30208506 -119308531 - PB1 SINE Alu -2 125 2 5 815 545 248 135 2 chr6 30208734 30208906 -119308131 + B4 SINE B4 100 292 0 5 815 289 247 0 27 chr6 30209126 30209201 -119307836 - ID4_ SINE ID -10 73 1 5 815 1050 57 64 0 chr6 30210347 30210487 -119306550 + B1_Mur4 SINE Alu 1 149 -1 5 815 441 258 1 62 chr6 30211129 30211276 -119305761 + B1F1 SINE Alu 1 140 -9 5 815 844 244 30 5 chr6 30211454 30211656 -119305381 + B3 SINE B2 1 207 -9 5 815 221 257 40 0 chr6 30211704 30211778 -119305259 + ID4 SINE ID 7 83 0 5 815 554 270 75 70 chr6 30212649 30212876 -119304161 + B4A SINE B4 2 229 -63 5 815 211 175 238 48 chr6 30212876 30212960 -119304077 + PB1D9 SINE Alu 2 101 -19 5 815 341 221 0 0 chr6 30212957 30213025 -119304012 + B3 SINE B2 95 162 -54 5 815 933 16 40 0 chr6 30214602 30214726 -119302311 - B1_Mus2 SINE Alu 0 147 19 5 815 541 273 7 21 chr6 30214925 30215067 -119301970 + B1F SINE Alu 3 142 -7 5 815 298 300 22 11 chr6 30215332 30215423 -119301614 + ID_B1 SINE B4 85 176 -48 5 815 225 304 33 74 chr6 30215423 30215450 -119301587 + PB1D10 SINE Alu 4 116 -1 5 815 649 176 88 0 chr6 30215796 30215921 -119301116 - B1_Mur1 SINE Alu -12 137 2 5 815 316 230 27 0 chr6 30215958 30216032 -119301005 - ID_B1 SINE B4 -4 220 145 5 815 392 228 123 0 chr6 30216155 30216269 -119300768 - B1F SINE Alu -17 132 5 5 815 240 237 140 30 chr6 30216305 30216405 -119300632 - PB1D7 SINE Alu -1 119 9 5 815 797 55 121 86 chr6 30216889 30217029 -119300008 + B1_Mus1 SINE Alu 3 147 -1 5 815 1211 54 0 13 chr6 30217222 30217372 -119299665 - B1_Mus1 SINE Alu 0 148 1 5 815 242 296 68 17 chr6 30218131 30218248 -119298789 + PB1 SINE Alu 1 123 -4 5 815 234 286 90 20 chr6 30218249 30218349 -119298688 + RSINE1 SINE B4 49 155 -10 5 815 388 321 64 45 chr6 30218486 30218688 -119298349 + ID_B1 SINE B4 3 208 -16 5 815 469 232 47 99 chr6 30218687 30218859 -119298178 + B3A SINE B2 29 191 -7 5 815 375 292 15 51 chr6 30218883 30219020 -119298017 + RSINE1 SINE B4 3 134 -31 5 815 197 310 74 45 chr6 30219956 30220132 -119296905 + L2b LINE L2 2980 3160 -215 5 815 231 61 0 0 chr6 30220254 30220287 -119296750 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 5 815 468 209 11 0 chr6 30221254 30221345 -119295692 + RSINE1 SINE B4 53 144 -21 5 815 958 221 0 14 chr6 30221706 30221917 -119295120 + B3 SINE B2 1 208 -8 5 815 421 229 129 16 chr6 30221980 30222104 -119294933 + B1_Mur1 SINE Alu 11 148 -1 5 815 715 189 58 7 chr6 30222245 30222384 -119294653 + B1_Mus2 SINE Alu 2 147 0 5 815 434 194 211 9 chr6 30223172 30223281 -119293756 + ID_B1 SINE B4 87 217 -7 5 815 232 264 16 131 chr6 30223458 30223474 -119293563 + MT2B LTR ERVL 152 153 -448 5 815 411 296 42 14 chr6 30223474 30223618 -119293419 + B1F2 SINE Alu 1 148 -1 5 815 353 212 0 34 chr6 30223618 30223735 -119293302 + GA-rich Low_complexity Low_complexity 1 113 0 5 815 198 71 0 0 chr6 30223823 30223851 -119293186 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 5 815 734 228 0 0 chr6 30224229 30224365 -119292672 + B1_Mm SINE Alu 2 137 -10 5 815 25 31 0 0 chr6 30224452 30224484 -119292553 + AT_rich Low_complexity Low_complexity 1 32 0 5 815 1016 111 28 0 chr6 30225131 30225275 -119291762 + B1_Mus1 SINE Alu 1 148 0 5 815 249 33 0 0 chr6 30225279 30225309 -119291728 + (A)n Simple_repeat Simple_repeat 1 30 0 5 815 188 268 160 59 chr6 30225453 30225572 -119291465 + MIR SINE MIR 100 230 -32 5 815 232 352 0 11 chr6 30226149 30226241 -119290796 - MurSatRep1 Unknown Unknown -1856 281 191 5 815 244 342 43 0 chr6 30226505 30226622 -119290415 - RSINE1 SINE B4 -40 125 4 5 815 228 211 0 0 chr6 30226676 30226752 -119290285 + A-rich Low_complexity Low_complexity 1 76 0 6 815 381 198 93 19 chr6 30227526 30227634 -119289403 + PB1D10 SINE Alu 1 116 -1 6 815 951 218 45 10 chr6 30227659 30227858 -119289179 + B3 SINE B2 4 209 -7 6 815 266 288 29 17 chr6 30228202 30228318 -119288719 + PB1D7 SINE Alu 1 115 -5 6 815 230 292 112 20 chr6 30228344 30228442 -119288595 - PB1D10 SINE Alu -9 108 2 6 815 699 168 23 80 chr6 30228790 30228965 -119288072 + B2_Mm2 SINE B2 3 167 -28 6 815 606 187 59 7 chr6 30229120 30229255 -119287782 + B1_Mur4 SINE Alu 9 150 0 6 815 369 150 112 0 chr6 30229522 30229602 -119287435 + B3 SINE B2 5 93 -123 6 815 230 274 0 0 chr6 30230183 30230234 -119286803 + ID4_ SINE ID 19 69 -14 6 815 493 223 97 30 chr6 30230543 30230677 -119286360 + B1F SINE Alu 6 148 -1 6 815 508 243 62 28 chr6 30230743 30230887 -119286150 + B1_Mur1 SINE Alu 1 149 0 6 815 594 276 86 9 chr6 30230962 30231141 -119285896 - B3A SINE B2 -4 191 6 6 815 266 205 25 37 chr6 30231324 30231405 -119285632 - PB1D10 SINE Alu 0 117 38 6 815 415 330 83 21 chr6 30231467 30231659 -119285378 + ORR1E LTR MaLR 29 232 -127 6 815 337 237 41 0 chr6 30231783 30231880 -119285157 + PB1D10 SINE Alu 14 114 -3 6 815 417 235 41 0 chr6 30231882 30231980 -119285057 + PB1D9 SINE Alu 13 114 -6 6 815 266 316 57 57 chr6 30232193 30232334 -119284703 - B1F SINE Alu -8 141 1 6 815 444 217 72 7 chr6 30232536 30232675 -119284362 - MER104 DNA Tc2 -32 149 2 6 815 410 273 10 10 chr6 30233014 30233114 -119283923 - B3 SINE B2 -111 105 6 6 815 509 293 83 51 chr6 30233123 30233339 -119283698 + B4A SINE B4 2 224 -68 6 815 607 247 51 13 chr6 30233355 30233511 -119283526 + RSINE1 SINE B4 4 165 0 6 815 223 282 85 28 chr6 30233596 30233702 -119283335 + PB1D10 SINE Alu 1 112 -5 6 815 275 308 26 0 chr6 30234001 30234079 -119282958 - Charlie1a DNA MER1_type -1277 178 99 6 815 281 222 0 31 chr6 30234154 30234219 -119282818 + ID_B1 SINE B4 105 167 -57 6 815 611 214 30 0 chr6 30234568 30234699 -119282338 + B1_Mus2 SINE Alu 12 146 -1 6 815 1242 28 0 0 chr6 30234722 30234865 -119282172 + B1_Mus2 SINE Alu 2 144 -3 6 815 302 0 0 26 chr6 30234950 30234989 -119282048 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 6 815 411 59 59 0 chr6 30234997 30235065 -119281972 - B1_Mur3 SINE Alu 0 149 78 6 815 618 236 28 7 chr6 30235294 30235439 -119281598 + B1_Mur1 SINE Alu 2 149 0 6 815 438 216 79 67 chr6 30235575 30235739 -119281298 + B3 SINE B2 51 216 0 6 815 602 160 124 31 chr6 30235790 30235919 -119281118 + B1_Mus2 SINE Alu 1 141 -6 6 815 252 260 123 0 chr6 30236043 30236116 -119280921 + PB1D10 SINE Alu 3 84 -33 6 815 399 289 54 8 chr6 30236106 30236235 -119280802 + ID_B1 SINE B4 85 219 -5 6 815 535 275 35 0 chr6 30236303 30236445 -119280592 + B1_Mur3 SINE Alu 1 147 -2 6 815 255 278 74 148 chr6 30236498 30236633 -119280404 + B1_Mus2 SINE Alu 2 126 -21 6 815 192 77 0 0 chr6 30236633 30236659 -119280378 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 6 815 545 256 15 23 chr6 30237223 30237355 -119279682 + B1_Mur2 SINE Alu 5 135 -14 6 815 468 0 0 0 chr6 30237355 30237407 -119279630 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 6 815 313 243 28 21 chr6 30237454 30237490 -119279547 + ORR1B1-int LTR MaLR 611 647 -862 6 815 979 16 0 0 chr6 30237490 30237616 -119279421 + B1_Mm SINE Alu 1 126 -21 6 815 210 160 0 0 chr6 30237616 30237666 -119279371 + A-rich Low_complexity Low_complexity 1 50 0 6 815 1891 233 119 44 chr6 30238037 30238575 -119278462 + RMER1B Other Other 363 951 -115 6 815 312 27 0 0 chr6 30238575 30238612 -119278425 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 6 815 1891 233 119 44 chr6 30238612 30238728 -119278309 + RMER1B Other Other 952 1065 -1 6 815 1276 99 44 6 chr6 30238790 30238972 -119278065 + B2_Mm2 SINE B2 1 189 -6 6 815 183 156 0 0 chr6 30238993 30239025 -119278012 + (CACG)n Simple_repeat Simple_repeat 4 35 0 6 815 1019 110 18 12 chr6 30239060 30239225 -119277812 + B2_Mm2 SINE B2 1 166 -29 6 815 213 184 82 0 chr6 30239785 30239834 -119277203 + ID4 SINE ID 21 73 -10 6 815 224 382 26 0 chr6 30239881 30239957 -119277080 - ID2 SINE ID -4 79 2 6 815 350 303 48 24 chr6 30240085 30240210 -119276827 + B1F SINE Alu 22 149 0 6 815 1504 58 26 0 chr6 30240228 30240417 -119276620 + B2_Mm2 SINE B2 2 195 0 6 815 318 323 43 0 chr6 30240442 30240535 -119276502 + B1F SINE Alu 13 109 -40 6 815 1074 64 0 28 chr6 30240674 30240819 -119276218 + B1_Mus2 SINE Alu 1 141 -6 6 815 195 42 0 0 chr6 30240821 30240845 -119276192 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 815 649 221 0 0 chr6 30240878 30241005 -119276032 + B1_Mus1 SINE Alu 2 128 -20 6 815 723 184 41 35 chr6 30241421 30241590 -119275447 + B3 SINE B2 40 209 -7 6 815 708 165 45 0 chr6 30241848 30241981 -119275056 - B1_Mur3 SINE Alu -10 139 1 6 815 443 241 37 0 chr6 30242008 30242116 -119274921 - PB1D9 SINE Alu -8 112 1 6 815 499 286 7 22 chr6 30242278 30242414 -119274623 + RSINE1 SINE B4 3 136 -29 6 815 235 103 51 0 chr6 30242934 30242973 -119274064 + B1_Mur1 SINE Alu 102 142 -7 6 815 644 157 26 97 chr6 30243183 30243338 -119273699 + B1_Mur3 SINE Alu 6 149 0 6 815 1209 54 0 0 chr6 30243542 30243689 -119273348 - B1_Mus1 SINE Alu 0 148 2 6 815 397 257 27 27 chr6 30243743 30243855 -119273182 - PB1D10 SINE Alu 0 117 6 6 815 22 70 0 0 chr6 30243855 30243898 -119273139 + AT_rich Low_complexity Low_complexity 1 43 0 6 815 1430 35 18 0 chr6 30244003 30244172 -119272865 + B2_Mm1a SINE B2 3 174 -19 6 815 435 173 0 0 chr6 30244172 30244253 -119272784 + GA-rich Low_complexity Low_complexity 1 81 0 6 815 333 0 0 0 chr6 30244440 30244477 -119272560 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 815 264 238 36 0 chr6 30244859 30244943 -119272094 + PB1D10 SINE Alu 26 112 -5 6 815 392 296 34 27 chr6 30245060 30245206 -119271831 + B1F1 SINE Alu 3 149 0 6 815 441 259 44 18 chr6 30245212 30245326 -119271711 + RSINE1 SINE B4 4 120 -45 6 815 1119 82 7 0 chr6 30245408 30245554 -119271483 + B1_Mus1 SINE Alu 2 148 0 6 815 1398 92 32 5 chr6 30245789 30246008 -119271029 + RLTR19 LTR ERVK 11 235 -264 6 815 1136 272 26 44 chr6 30245999 30246383 -119270654 + RLTR19 LTR ERVK 123 499 0 6 815 503 74 12 0 chr6 30246449 30246530 -119270507 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 6 815 325 333 0 73 chr6 30246533 30246643 -119270394 + PB1D10 SINE Alu 6 107 -10 6 815 1173 81 0 0 chr6 30246779 30246927 -119270110 + B1_Mus1 SINE Alu 1 148 0 6 815 1138 64 0 0 chr6 30247119 30247259 -119269778 - B1_Mm SINE Alu -6 141 2 6 815 645 186 65 0 chr6 30247289 30247413 -119269624 + B1_Mus2 SINE Alu 1 132 -15 6 815 221 232 171 0 chr6 30247417 30247449 -119269588 + PB1D9 SINE Alu 5 37 -83 6 815 183 80 0 0 chr6 30247449 30247474 -119269563 + (TTAGGG)n Simple_repeat Simple_repeat 6 30 0 6 815 221 232 171 0 chr6 30247474 30247523 -119269514 + PB1D9 SINE Alu 38 99 -21 6 815 491 112 0 12 chr6 30247644 30247725 -119269312 + (TG)n Simple_repeat Simple_repeat 1 80 0 6 815 503 274 8 0 chr6 30247791 30247908 -119269129 - B3 SINE B2 -96 120 3 6 815 797 112 126 0 chr6 30248127 30248270 -119268767 - B2_Mm2 SINE B2 -33 162 2 6 815 1019 64 41 41 chr6 30248289 30248436 -119268601 - B1_Mus1 SINE Alu -1 147 1 6 815 364 266 44 0 chr6 30248589 30248702 -119268335 + MER5A DNA MER1_type 71 188 -1 6 815 27 29 0 0 chr6 30249461 30249495 -119267542 + AT_rich Low_complexity Low_complexity 1 34 0 6 815 397 204 155 0 chr6 30249570 30249673 -119267364 - PB1D9 SINE Alu 0 120 2 6 815 1071 49 7 40 chr6 30249799 30249949 -119267088 + B1_Mus1 SINE Alu 3 147 -1 6 815 225 132 0 0 chr6 30252618 30252656 -119264381 + (A)n Simple_repeat Simple_repeat 1 38 0 6 815 237 65 0 0 chr6 30253613 30253644 -119263393 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 815 230 159 23 0 chr6 30254107 30254151 -119262886 + (CCG)n Simple_repeat Simple_repeat 2 46 0 6 815 240 261 0 0 chr6 30254403 30254468 -119262569 + (CTCG)n Simple_repeat Simple_repeat 2 66 0 6 815 182 246 43 71 chr6 30255033 30255103 -119261934 - MIR3 SINE MIR -25 183 116 6 815 320 298 82 30 chr6 30255255 30255390 -119261647 + MER5A1 DNA MER1_type 25 166 0 6 815 666 246 61 5 chr6 30255591 30255803 -119261234 - L1MB4 LINE L1 0 6180 5957 6 815 342 274 57 51 chr6 30256044 30256221 -119260816 + MER5B DNA MER1_type 1 178 0 6 815 186 43 0 0 chr6 30256669 30256692 -119260345 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 6 815 1129 37 0 0 chr6 30256692 30256826 -119260211 - B1_Mm SINE Alu -9 138 5 6 815 710 268 27 46 chr6 30256852 30257071 -119259966 - B3 SINE B2 0 216 2 6 815 249 272 59 42 chr6 30257138 30257257 -119259780 + MIRc SINE MIR 99 219 -49 6 815 219 36 0 0 chr6 30259132 30259160 -119257877 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 815 1154 61 0 20 chr6 30259170 30259320 -119257717 - B1_Mus2 SINE Alu 0 147 1 7 815 386 280 0 92 chr6 30259417 30259430 -119257607 - PB1D7 SINE Alu -2 118 110 7 815 279 0 0 0 chr6 30259430 30259461 -119257576 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7 815 386 280 0 92 chr6 30259461 30259577 -119257460 - PB1D7 SINE Alu -11 109 1 7 815 230 349 27 9 chr6 30259590 30259700 -119257337 - L2a LINE L2 -36 3390 3279 7 815 626 289 129 24 chr6 30259815 30260063 -119256974 + B4 SINE B4 1 274 -18 7 815 459 0 0 0 chr6 30260102 30260153 -119256884 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 815 274 288 73 41 chr6 30260215 30260338 -119256699 + RSINE1 SINE B4 3 129 -36 7 815 1261 41 0 0 chr6 30260383 30260530 -119256507 + B1_Mus2 SINE Alu 1 147 0 7 815 1135 81 0 7 chr6 30260991 30261140 -119255897 + B1_Mus1 SINE Alu 1 148 0 7 815 180 0 0 0 chr6 30261140 30261160 -119255877 + (A)n Simple_repeat Simple_repeat 1 20 0 7 815 250 243 14 0 chr6 30261259 30261333 -119255704 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 7 815 1114 207 14 0 chr6 30261388 30261596 -119255441 - B3 SINE B2 -5 211 1 7 815 195 100 0 0 chr6 30261686 30261716 -119255321 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 815 844 177 0 26 chr6 30261724 30261875 -119255162 + B1_Mus1 SINE Alu 2 148 0 7 815 394 351 8 0 chr6 30261898 30262029 -119255008 + RSINE1 SINE B4 11 142 -23 7 815 220 289 57 40 chr6 30262204 30262309 -119254728 - MIR SINE MIR -142 126 17 7 815 591 243 132 0 chr6 30262419 30262563 -119254474 + B3A SINE B2 1 163 -35 7 815 1049 95 0 33 chr6 30262732 30262884 -119254153 - B1_Mus1 SINE Alu 0 148 2 7 815 3576 128 80 109 chr6 30262977 30263560 -119253477 + RMER6A LTR ERVK 1 589 -167 7 815 1152 71 0 0 chr6 30263560 30263701 -119253336 + B1_Mus2 SINE Alu 1 141 -6 7 815 3576 128 80 109 chr6 30263701 30263896 -119253141 + RMER6A LTR ERVK 590 756 0 7 815 322 280 62 19 chr6 30264201 30264361 -119252676 - MER2 DNA MER2_type -117 228 62 7 815 220 111 22 22 chr6 30264364 30264410 -119252627 + CT-rich Low_complexity Low_complexity 2 47 0 7 815 363 271 21 10 chr6 30264414 30264511 -119252526 - RSINE1 SINE B4 -22 143 46 7 815 618 182 80 7 chr6 30264572 30264710 -119252327 + B1_Mur2 SINE Alu 1 148 -1 7 815 252 338 101 7 chr6 30264750 30264899 -119252138 - RSINE1 SINE B4 0 165 3 7 815 336 64 0 0 chr6 30264913 30264960 -119252077 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 7 815 217 338 13 13 chr6 30264984 30265059 -119251978 + B4 SINE B4 44 118 -174 7 815 216 292 41 92 chr6 30265208 30265306 -119251731 + PB1D9 SINE Alu 28 120 0 7 815 860 155 250 0 chr6 30265327 30265495 -119251542 + B3 SINE B2 2 211 -5 7 815 1191 62 0 0 chr6 30265498 30265644 -119251393 + B1_Mm SINE Alu 1 146 -1 7 815 37 0 0 0 chr6 30265644 30265681 -119251356 + AT_rich Low_complexity Low_complexity 1 37 0 7 815 348 278 107 34 chr6 30265785 30265934 -119251103 - B4A SINE B4 -59 233 74 7 815 903 216 73 26 chr6 30266501 30266782 -119250255 + L1MB8 LINE L1 5674 5939 -239 7 815 816 131 93 14 chr6 30266872 30267011 -119250026 - B1_Mur4 SINE Alu 0 150 1 7 815 794 209 12 42 chr6 30267040 30267205 -119249832 - RSINE1 SINE B4 -4 161 2 7 815 298 242 30 0 chr6 30267312 30267378 -119249659 + RSINE1 SINE B4 52 119 -46 7 815 1097 96 0 7 chr6 30267418 30267565 -119249472 + B1_Mus2 SINE Alu 1 146 -1 7 815 321 89 0 0 chr6 30267566 30267611 -119249426 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 7 815 563 264 29 0 chr6 30267611 30267751 -119249286 + B3A SINE B2 30 173 -25 7 815 414 0 0 0 chr6 30267755 30267801 -119249236 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 815 504 304 8 0 chr6 30267807 30267932 -119249105 - PB1 SINE Alu -1 126 1 7 815 321 276 78 48 chr6 30268036 30268139 -119248898 + PB1D9 SINE Alu 1 106 -14 7 815 382 241 45 58 chr6 30268179 30268192 -119248845 + B4 SINE B4 77 214 -78 7 815 788 104 73 7 chr6 30268192 30268319 -119248718 + B1_Mur4 SINE Alu 3 138 -12 7 815 746 22 11 0 chr6 30268319 30268411 -119248626 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 7 815 335 267 149 8 chr6 30268419 30268540 -119248497 + B1F SINE Alu 11 148 -1 7 815 2481 129 66 2 chr6 30268578 30268974 -119248063 + MTC LTR MaLR 1 421 0 7 815 1254 48 0 0 chr6 30269570 30269717 -119247320 + B1_Mus1 SINE Alu 1 147 -1 7 815 225 0 0 0 chr6 30269718 30269743 -119247294 + (GA)n Simple_repeat Simple_repeat 2 26 0 7 815 410 132 0 13 chr6 30269743 30269820 -119247217 + (GAAAA)n Simple_repeat Simple_repeat 2 77 0 7 815 274 319 25 102 chr6 30269820 30269977 -119247060 + ID_B1 SINE B4 80 224 0 7 815 245 247 10 92 chr6 30270022 30270120 -119246917 + ID_B1 SINE B4 133 222 -2 7 815 638 237 74 20 chr6 30270129 30270331 -119246706 + ID_B1 SINE B4 2 214 -10 7 815 205 206 45 45 chr6 30270340 30270406 -119246631 + (CAAA)n Simple_repeat Simple_repeat 2 67 0 7 815 570 219 87 7 chr6 30271485 30271623 -119245414 + B1F SINE Alu 1 149 0 7 815 230 116 0 23 chr6 30271632 30271676 -119245361 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 7 815 189 0 0 0 chr6 30271738 30271759 -119245278 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 7 815 866 131 65 7 chr6 30271759 30271897 -119245140 - B1_Mur3 SINE Alu -3 146 1 7 815 784 244 86 5 chr6 30272247 30272445 -119244592 + ID_B1 SINE B4 2 215 -9 7 815 407 136 0 28 chr6 30273076 30273182 -119243855 + T-rich Low_complexity Low_complexity 1 103 0 7 815 1020 51 64 14 chr6 30273182 30273322 -119243715 - B1_Mus2 SINE Alu 0 147 1 7 815 678 281 87 0 chr6 30273325 30273510 -119243527 - ID_B1 SINE B4 -2 222 22 7 815 1635 47 0 0 chr6 30273644 30273836 -119243201 + B2_Mm1t SINE B2 2 193 0 7 815 1196 34 7 14 chr6 30273863 30274011 -119243026 + B1_Mus2 SINE Alu 1 147 0 7 815 202 139 0 0 chr6 30274213 30274249 -119242788 - L2b LINE L2 0 3375 3340 7 815 1151 112 79 0 chr6 30274458 30274636 -119242401 + B2_Mm1t SINE B2 1 192 -1 7 815 901 141 42 0 chr6 30274655 30274797 -119242240 + B1_Mus1 SINE Alu 1 148 0 7 815 752 197 0 28 chr6 30274818 30274959 -119242078 + B1_Mus1 SINE Alu 2 138 -10 7 815 433 262 0 84 chr6 30275167 30275321 -119241716 + ID_B1 SINE B4 81 221 -3 7 815 312 209 0 56 chr6 30275330 30275401 -119241636 + ID4_ SINE ID 2 68 -15 7 815 740 264 16 37 chr6 30275419 30275608 -119241429 + B3 SINE B2 1 185 -31 7 815 466 0 68 0 chr6 30275614 30275688 -119241349 + (TA)n Simple_repeat Simple_repeat 2 80 0 7 815 270 301 68 0 chr6 30275711 30275814 -119241223 + MLT1C LTR MaLR 65 174 -293 7 815 505 187 168 0 chr6 30275829 30275936 -119241101 + B1_Mur1 SINE Alu 3 127 -22 7 815 334 308 256 0 chr6 30275945 30276172 -119240865 + B4A SINE B4 3 287 -5 7 815 255 61 0 0 chr6 30276173 30276206 -119240831 + (A)n Simple_repeat Simple_repeat 1 33 0 7 815 1052 227 9 18 chr6 30276415 30276644 -119240393 - MTE2b LTR MaLR -12 367 141 7 815 368 88 0 17 chr6 30276947 30277005 -119240032 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 7 815 487 286 177 9 chr6 30277158 30277373 -119239664 - MLT1G LTR MaLR -63 528 278 7 101 924 223 25 0 chr6 30277455 30277657 -119239380 - B3 SINE B2 -6 210 4 7 816 554 229 28 28 chr6 30277695 30277803 -119239234 - B1F SINE Alu -19 130 23 7 816 222 211 0 0 chr6 30277898 30277936 -119239101 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 816 564 215 83 23 chr6 30277987 30278120 -119238917 - ID_B1 SINE B4 -5 219 79 7 816 425 255 43 0 chr6 30278239 30278333 -119238704 - PB1D7 SINE Alu -14 106 9 7 816 408 241 0 107 chr6 30278335 30278355 -119238682 + MT2B LTR ERVL 152 158 -443 7 816 690 213 37 0 chr6 30278355 30278491 -119238546 + B1_Mur3 SINE Alu 4 144 -5 7 816 234 0 0 0 chr6 30278491 30278517 -119238520 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 7 816 474 18 0 0 chr6 30278529 30278584 -119238453 + (GAGAA)n Simple_repeat Simple_repeat 3 57 0 7 816 246 306 150 16 chr6 30279486 30279732 -119237305 + B4A SINE B4 2 280 -12 7 816 304 103 35 0 chr6 30279742 30279800 -119237237 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 816 920 193 81 27 chr6 30280260 30280446 -119236591 + B3 SINE B2 16 211 -5 7 816 1207 55 7 0 chr6 30280592 30280737 -119236300 + B1_Mm SINE Alu 2 147 0 7 816 601 233 94 20 chr6 30281269 30281418 -119235619 + MTD LTR MaLR 1 160 -259 7 816 1280 97 11 0 chr6 30281446 30281621 -119235416 + B2_Mm1t SINE B2 3 179 -14 7 816 565 158 48 48 chr6 30281673 30281819 -119235218 + B2_Mm2 SINE B2 47 192 -3 7 816 1238 41 0 7 chr6 30281820 30281969 -119235068 + B1_Mus1 SINE Alu 1 148 0 7 816 235 271 33 40 chr6 30281969 30282114 -119234923 + ORR1B1-int LTR MaLR 606 750 -759 7 816 915 143 7 7 chr6 30282014 30282155 -119234882 + B1_Mur4 SINE Alu 10 150 0 7 816 182 86 86 0 chr6 30282168 30282203 -119234834 + GA-rich Low_complexity Low_complexity 4 41 0 7 816 506 213 213 27 chr6 30282205 30282393 -119234644 + MTD LTR MaLR 197 419 0 7 816 339 260 103 24 chr6 30282394 30282520 -119234517 + MLT1M LTR MaLR 236 371 -301 7 816 413 318 14 70 chr6 30282576 30282691 -119234346 + ID_B1 SINE B4 91 202 -22 8 816 3309 136 62 20 chr6 30282691 30283252 -119233785 - RMER4B LTR ERVK 0 585 1 8 816 413 318 14 70 chr6 30283252 30283278 -119233759 + ID_B1 SINE B4 203 224 0 8 816 279 0 0 0 chr6 30283278 30283309 -119233728 + (TAAAAA)n Simple_repeat Simple_repeat 6 36 0 8 816 214 271 180 40 chr6 30283324 30283424 -119233613 + PB1D10 SINE Alu 3 116 -1 8 816 382 244 0 35 chr6 30283448 30283533 -119233504 + ID_B1 SINE B4 123 204 -20 8 816 685 251 69 44 chr6 30283586 30283790 -119233247 + B3 SINE B2 2 210 -6 8 816 1386 74 21 16 chr6 30283797 30283990 -119233047 + B2_Mm2 SINE B2 1 194 -1 8 816 320 171 243 0 chr6 30284051 30284121 -119232916 + B1_Mus2 SINE Alu 40 126 -21 8 816 340 252 409 17 chr6 30284294 30284474 -119232563 + MLT1A1 LTR MaLR 157 408 0 8 816 431 151 55 14 chr6 30284520 30284608 -119232429 - B1_Mur1 SINE Alu -1 119 34 8 816 270 282 92 23 chr6 30284537 30284624 -119232413 - MT2B LTR ERVL -340 261 169 8 816 207 158 0 50 chr6 30284694 30284734 -119232303 + polypyrimidine Low_complexity Low_complexity 4 41 0 8 816 307 287 111 0 chr6 30284738 30284846 -119232191 - PB1D7 SINE Alu 0 120 1 8 816 786 50 0 0 chr6 30284861 30284960 -119232077 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 8 816 1078 70 146 0 chr6 30284982 30285140 -119231897 - B2_Mm2 SINE B2 -14 181 1 8 816 340 206 14 14 chr6 30285191 30285265 -119231772 - ID4 SINE ID -6 77 4 8 816 305 245 140 20 chr6 30285299 30285399 -119231638 - B1F1 SINE Alu -10 139 28 8 816 256 241 19 0 chr6 30285451 30285505 -119231532 - PB1D9 SINE Alu -65 55 1 8 816 252 0 0 0 chr6 30285935 30285963 -119231074 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 8 816 1186 61 7 0 chr6 30286015 30286162 -119230875 - B1_Mus1 SINE Alu 0 148 1 8 816 1072 180 241 39 chr6 30286174 30286481 -119230556 - RMER10A LTR ERVL -73 369 1 8 816 194 232 12 0 chr6 30286701 30286762 -119230275 - MIRb SINE MIR -96 172 105 8 816 220 297 215 19 chr6 30286821 30286979 -119230058 + L2a LINE L2 3018 3206 -169 8 816 294 238 25 0 chr6 30287024 30287104 -119229933 + MLT1L LTR MaLR 3 84 -526 8 816 780 116 0 0 chr6 30287194 30287306 -119229731 - B1_Mus2 SINE Alu -7 140 29 8 816 201 108 0 0 chr6 30287306 30287343 -119229694 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 8 816 23 0 0 0 chr6 30287466 30287489 -119229548 + AT_rich Low_complexity Low_complexity 1 23 0 8 816 1259 34 0 0 chr6 30287489 30287635 -119229402 - B1_Mus2 SINE Alu 0 147 2 8 816 417 247 57 80 chr6 30287743 30287919 -119229118 - B4A SINE B4 -118 174 3 8 816 218 241 17 33 chr6 30287921 30288041 -119228996 + C-rich Low_complexity Low_complexity 1 118 0 8 816 683 288 22 38 chr6 30288047 30288231 -119228806 - ID_B1 SINE B4 -19 205 25 8 816 319 279 35 0 chr6 30288224 30288310 -119228727 - MLT1B LTR MaLR -299 91 3 8 816 1132 76 0 34 chr6 30288397 30288546 -119228491 + B1_Mus1 SINE Alu 2 145 -3 8 816 384 22 0 0 chr6 30288546 30288591 -119228446 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 816 267 275 122 24 chr6 30288592 30288715 -119228322 + L2a LINE L2 3233 3377 -49 8 816 432 0 0 0 chr6 30288876 30288924 -119228113 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 816 266 276 183 33 chr6 30289065 30289185 -119227852 - MER5A DNA MER1_type -8 181 44 8 816 444 92 6 126 chr6 30289368 30289542 -119227495 + (TG)n Simple_repeat Simple_repeat 2 154 0 8 816 183 93 22 44 chr6 30289626 30289671 -119227366 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 816 917 246 39 35 chr6 30289749 30289936 -119227101 - B4A SINE B4 -19 273 85 8 816 914 201 122 0 chr6 30289936 30290125 -119226912 - B3 SINE B2 -4 212 1 8 816 917 246 39 35 chr6 30290125 30290194 -119226843 - B4A SINE B4 -208 84 16 8 816 189 171 0 0 chr6 30290846 30290881 -119226156 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 816 1214 68 0 0 chr6 30290901 30291048 -119225989 - B1_Mus1 SINE Alu 0 148 2 8 816 423 239 10 71 chr6 30291082 30291181 -119225856 - PB1D10 SINE Alu -24 93 1 8 816 713 135 42 63 chr6 30291377 30291519 -119225518 - B1_Mus2 SINE Alu -4 143 5 8 816 537 258 50 0 chr6 30291612 30291732 -119225305 + B4 SINE B4 85 210 -82 8 816 819 0 0 0 chr6 30291732 30291823 -119225214 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 8 816 761 141 16 8 chr6 30291834 30291956 -119225081 + B1_Mur2 SINE Alu 26 148 -1 8 816 355 303 30 72 chr6 30291985 30292065 -119224972 + RSINE1 SINE B4 3 81 -84 8 816 369 0 0 0 chr6 30292065 30292106 -119224931 + (TAA)n Simple_repeat Simple_repeat 3 43 0 8 816 355 303 30 72 chr6 30292106 30292192 -119224845 + RSINE1 SINE B4 82 162 -3 8 816 211 176 0 29 chr6 30292596 30292631 -119224406 + RSINE1 SINE B4 19 52 -113 8 816 405 0 0 0 chr6 30292662 30292707 -119224330 + (TAA)n Simple_repeat Simple_repeat 2 46 0 8 816 1762 178 95 97 chr6 30292718 30292747 -119224290 - RLTR11A LTR ERVK -43 485 449 8 816 339 25 0 0 chr6 30292747 30292787 -119224250 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 816 1762 178 95 97 chr6 30292787 30293243 -119223794 - RLTR11A LTR ERVK -80 448 2 8 816 342 333 58 53 chr6 30293243 30293444 -119223593 + MARNA DNA Mariner 257 458 -128 8 816 473 248 9 0 chr6 30293511 30293616 -119223421 + PB1D10 SINE Alu 1 106 -11 8 816 216 0 0 0 chr6 30293616 30293640 -119223397 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 816 272 231 23 114 chr6 30293685 30293773 -119223264 + BC1_Mm scRNA scRNA 1 80 -72 8 816 1413 65 43 0 chr6 30293878 30294063 -119222974 - B2_Mm2 SINE B2 -2 193 1 8 816 270 0 0 0 chr6 30294569 30294599 -119222438 + (CAG)n Simple_repeat Simple_repeat 1 30 0 8 816 439 208 0 16 chr6 30294680 30294807 -119222230 + CT-rich Low_complexity Low_complexity 2 126 0 8 816 596 175 0 19 chr6 30294881 30294986 -119222051 + PB1D9 SINE Alu 18 120 0 8 816 419 298 43 9 chr6 30295064 30295179 -119221858 - ID_B1 SINE B4 -21 203 85 8 816 425 216 34 11 chr6 30295181 30295270 -119221767 - PB1D7 SINE Alu -3 117 27 8 816 238 255 0 0 chr6 30295270 30295317 -119221720 - L1M3 LINE L1 -519 5661 5615 8 816 414 326 89 6 chr6 30295319 30295498 -119221539 - MIR SINE MIR -49 213 20 8 816 29 0 0 0 chr6 30295498 30295527 -119221510 + AT_rich Low_complexity Low_complexity 1 29 0 8 816 3410 30 0 0 chr6 30295585 30295980 -119221057 - L1Md_T LINE L1 0 6582 6188 8 816 582 192 124 8 chr6 30295998 30296119 -119220918 - B1F1 SINE Alu -1 148 14 8 816 1037 85 43 0 chr6 30296346 30296487 -119220550 + B1_Mus2 SINE Alu 1 147 0 8 816 359 205 33 43 chr6 30296572 30296664 -119220373 + PB1D10 SINE Alu 27 117 0 8 816 249 108 0 0 chr6 30296664 30296701 -119220336 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 8 816 180 162 108 0 chr6 30297081 30297118 -119219919 - L2 LINE L2 -592 2827 2787 8 816 315 282 126 0 chr6 30297197 30297371 -119219666 + L1MC4 LINE L1 7181 7376 -666 8 816 392 289 0 0 chr6 30297375 30297465 -119219572 - 5S rRNA rRNA -30 91 2 8 816 395 244 0 63 chr6 30297566 30297693 -119219344 + PB1D9 SINE Alu 1 119 -1 8 816 497 308 30 8 chr6 30297704 30297835 -119219202 + RSINE1 SINE B4 3 136 -29 8 816 21 0 0 0 chr6 30297841 30297862 -119219175 + AT_rich Low_complexity Low_complexity 1 21 0 8 816 336 252 189 31 chr6 30297881 30297899 -119219138 + B1F1 SINE Alu 1 147 -2 8 816 406 250 119 9 chr6 30297899 30298008 -119219029 + ID_B1 SINE B4 102 222 -2 8 816 509 164 22 0 chr6 30298014 30298122 -119218915 + B1_Mur4 SINE Alu 20 135 -15 8 816 811 267 6 0 chr6 30298126 30298302 -119218735 + B3A SINE B2 2 178 -20 8 816 425 165 22 0 chr6 30298302 30298393 -119218644 + (TATATG)n Simple_repeat Simple_repeat 6 98 0 8 816 684 207 214 8 chr6 30298504 30298687 -119218350 + B3 SINE B2 2 216 0 8 816 1222 55 0 7 chr6 30298687 30298834 -119218203 + B1_Mus2 SINE Alu 2 147 0 8 816 331 288 45 85 chr6 30298834 30298851 -119218186 + B2_Mm2 SINE B2 179 193 -2 8 816 246 319 76 42 chr6 30298971 30299089 -119217948 + L1MC4 LINE L1 7634 7755 -287 8 816 646 241 104 44 chr6 30299094 30299276 -119217761 + B3 SINE B2 1 193 -2 8 816 1399 76 16 0 chr6 30299279 30299464 -119217573 + B2_Mm2 SINE B2 2 189 -6 8 816 1099 58 58 0 chr6 30299471 30299610 -119217427 + B1_Mus1 SINE Alu 2 148 0 8 816 490 211 60 96 chr6 30299636 30299676 -119217361 + B2_Mm2 SINE B2 2 35 -160 8 816 1151 58 0 0 chr6 30299676 30299814 -119217223 + B1_Mus1 SINE Alu 2 139 -9 8 816 227 31 31 0 chr6 30299814 30299846 -119217191 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 816 490 211 60 96 chr6 30299846 30299969 -119217068 + B2_Mm2 SINE B2 36 160 -35 8 816 783 21 0 0 chr6 30299969 30300062 -119216975 + (CA)n Simple_repeat Simple_repeat 2 94 0 8 816 490 211 60 96 chr6 30300062 30300095 -119216942 + B2_Mm2 SINE B2 161 192 -3 8 816 1188 56 0 0 chr6 30300120 30300262 -119216775 + B1_Mm SINE Alu 1 142 -5 8 816 404 254 1 57 chr6 30300496 30300608 -119216429 - PB1D10 SINE Alu -11 106 3 8 816 880 216 0 0 chr6 30300654 30300802 -119216235 - B1_Mur4 SINE Alu 0 150 3 8 816 324 83 0 0 chr6 30300842 30300890 -119216147 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 816 670 242 20 69 chr6 30301651 30301747 -119215290 + RMER30 DNA MER1_type 7 96 -106 8 816 891 152 251 0 chr6 30301747 30301918 -119215119 + B3 SINE B2 2 215 -1 8 816 670 242 20 69 chr6 30301918 30302025 -119215012 + RMER30 DNA MER1_type 97 200 -2 8 816 215 232 16 82 chr6 30302333 30302394 -119214643 + PB1D7 SINE Alu 1 57 -63 8 816 1374 224 106 16 chr6 30302811 30303178 -119213859 + MTD LTR MaLR 1 402 -17 8 816 216 0 0 0 chr6 30303178 30303202 -119213835 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 816 734 126 35 40 chr6 30303465 30303612 -119213425 + B1_Mus2 SINE Alu 1 149 0 8 816 363 231 80 36 chr6 30304142 30304254 -119212783 + PB1D10 SINE Alu 1 117 0 9 816 391 228 19 76 chr6 30304255 30304412 -119212625 + B1_Mur1 SINE Alu 2 149 0 9 816 638 105 2 19 chr6 30304434 30304541 -119212496 + B1_Mus2 SINE Alu 17 146 -1 9 816 234 0 0 0 chr6 30304570 30304596 -119212441 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 9 816 312 261 21 32 chr6 30304636 30304731 -119212306 + RSINE1 SINE B4 72 165 0 9 816 29 0 0 0 chr6 30304733 30304762 -119212275 + AT_rich Low_complexity Low_complexity 1 29 0 9 816 423 315 53 15 chr6 30304762 30304894 -119212143 + B3 SINE B2 1 137 -79 9 816 186 43 0 0 chr6 30304905 30304928 -119212109 + (TCTCCC)n Simple_repeat Simple_repeat 3 25 0 9 816 629 200 8 0 chr6 30305011 30305131 -119211906 - ID_B1 SINE B4 0 224 104 9 816 229 342 72 47 chr6 30306177 30306370 -119210667 - MIRb SINE MIR -32 236 39 9 816 1017 55 0 0 chr6 30307130 30307257 -119209780 + B1_Mus2 SINE Alu 21 147 0 9 816 207 0 0 0 chr6 30307257 30307280 -119209757 + (A)n Simple_repeat Simple_repeat 1 23 0 9 816 552 245 13 45 chr6 30307457 30307551 -119209486 + B1_Mur1 SINE Alu 1 94 -55 9 816 823 162 129 53 chr6 30307551 30307760 -119209277 + URR1B DNA MER1_type 1 225 0 9 816 552 245 13 45 chr6 30307760 30307819 -119209218 + B1_Mur1 SINE Alu 95 149 0 9 816 1177 96 78 11 chr6 30308285 30308464 -119208573 + B2_Mm1t SINE B2 2 192 -1 9 816 534 221 87 0 chr6 30308506 30308633 -119208404 - B1_Mur2 SINE Alu 0 149 12 9 816 574 306 80 0 chr6 30308653 30308852 -119208185 - B3 SINE B2 0 216 2 9 816 224 308 178 0 chr6 30309004 30309111 -119207926 + MIRb SINE MIR 35 160 -108 9 816 483 18 0 0 chr6 30309392 30309448 -119207589 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 816 302 239 22 11 chr6 30310651 30310724 -119206313 - MLT1A1 LTR MaLR 0 408 335 9 816 629 192 137 20 chr6 30310724 30310864 -119206173 + B1_Mur4 SINE Alu 2 137 -13 9 816 1094 93 0 0 chr6 30310864 30311004 -119206033 - B1_Mus2 SINE Alu -6 141 2 9 816 331 300 6 125 chr6 30311004 30311031 -119206006 + B1F SINE Alu 123 149 0 9 816 1289 76 47 0 chr6 30311038 30311210 -119205827 + B2_Mm2 SINE B2 2 181 -14 9 816 286 115 56 37 chr6 30311257 30311311 -119205726 + B2_Mm2 SINE B2 47 101 -94 9 816 234 105 0 0 chr6 30311329 30311367 -119205670 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 9 816 1263 107 27 0 chr6 30311369 30311556 -119205481 + B2_Mm2 SINE B2 2 193 -2 9 816 828 117 83 0 chr6 30311664 30311784 -119205253 - B1_Mus1 SINE Alu -17 131 2 9 816 354 274 73 10 chr6 30311902 30311998 -119205039 - RSINE1 SINE B4 -61 104 3 9 816 810 237 84 25 chr6 30312009 30312212 -119204825 - ID_B1 SINE B4 -7 217 3 9 816 365 196 124 76 chr6 30312449 30312554 -119204483 + PB1D10 SINE Alu 1 110 -7 9 816 489 313 64 48 chr6 30312565 30312649 -119204388 + B4 SINE B4 5 91 -201 9 816 213 362 86 0 chr6 30312649 30312765 -119204272 + PB1 SINE Alu 2 127 0 9 816 272 237 0 0 chr6 30312810 30312869 -119204168 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 816 373 302 9 0 chr6 30312887 30313003 -119204034 + ID_B1 SINE B4 82 198 -26 9 816 618 187 129 8 chr6 30313060 30313184 -119203853 + B3 SINE B2 63 201 -15 9 816 701 12 0 11 chr6 30313208 30313295 -119203742 + (CAAG)n Simple_repeat Simple_repeat 2 87 0 9 816 317 285 128 23 chr6 30313306 30313439 -119203598 + RSINE1 SINE B4 1 147 -18 9 816 223 316 66 0 chr6 30313538 30313614 -119203423 + B4A SINE B4 83 163 -129 9 816 188 111 28 0 chr6 30313695 30313731 -119203306 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 816 247 294 189 36 chr6 30313746 30313914 -119203123 - B4 SINE B4 -63 229 38 9 816 180 0 0 0 chr6 30313914 30313934 -119203103 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 816 244 289 11 67 chr6 30313934 30313964 -119203073 - B4A SINE B4 -255 37 8 9 816 264 229 21 0 chr6 30314306 30314354 -119202683 - ID4_ SINE ID -30 53 5 9 816 405 0 0 0 chr6 30314488 30314533 -119202504 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 9 816 657 182 19 143 chr6 30314533 30314633 -119202404 - B1_Mur4 SINE Alu -15 135 49 9 816 1247 41 0 0 chr6 30314633 30314780 -119202257 - B1_Mm SINE Alu 0 147 1 9 816 657 182 19 143 chr6 30314780 30314833 -119202204 - B1_Mur4 SINE Alu -102 48 1 9 816 755 187 45 0 chr6 30315352 30315486 -119201551 - B1_Mus1 SINE Alu -7 141 2 9 816 308 274 27 0 chr6 30315521 30315594 -119201443 - PB1D7 SINE Alu -34 86 12 9 816 1235 108 0 17 chr6 30315685 30315864 -119201173 + B2_Mm2 SINE B2 1 176 -19 9 816 1002 115 26 0 chr6 30315867 30316023 -119201014 + B2_Mm2 SINE B2 34 193 -2 9 816 1084 37 82 0 chr6 30316783 30316917 -119200120 + B1_Mus1 SINE Alu 3 147 -1 9 816 3436 45 0 0 chr6 30317278 30317674 -119199363 + MTA_Mm LTR MaLR 1 396 0 9 816 216 0 0 0 chr6 30317942 30317966 -119199071 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 9 816 222 105 0 0 chr6 30317969 30318007 -119199030 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 9 816 194 91 30 0 chr6 30318022 30318055 -119198982 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 9 816 786 191 8 0 chr6 30318055 30318181 -119198856 - B1_Mur4 SINE Alu -13 137 11 9 816 565 265 7 29 chr6 30318206 30318342 -119198695 - RSINE1 SINE B4 -8 157 25 9 816 689 234 13 56 chr6 30318402 30318630 -119198407 + B3A SINE B2 1 210 -6 9 816 283 238 148 12 chr6 30318659 30318740 -119198297 + B3A SINE B2 2 93 -105 9 816 488 221 96 0 chr6 30318751 30318855 -119198182 - B1_Mur2 SINE Alu -34 115 2 9 816 313 257 48 38 chr6 30319016 30319121 -119197916 - PB1D10 SINE Alu 0 117 12 9 816 444 268 98 26 chr6 30319183 30319336 -119197701 - RSINE1 SINE B4 0 165 2 9 816 204 40 0 0 chr6 30319373 30319398 -119197639 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 9 816 474 101 0 0 chr6 30320176 30320245 -119196792 + (CA)n Simple_repeat Simple_repeat 1 69 0 9 816 321 141 167 14 chr6 30320602 30320674 -119196363 - PB1D10 SINE Alu 0 117 35 9 816 329 214 66 22 chr6 30320739 30320830 -119196207 - PB1D10 SINE Alu -16 101 7 9 816 407 229 109 95 chr6 30320949 30321066 -119195971 + L1_Mur3 LINE L1 5144 5250 -597 9 816 1106 57 50 0 chr6 30321066 30321206 -119195831 + B1_Mus2 SINE Alu 1 147 0 9 816 463 195 161 12 chr6 30321206 30321257 -119195780 + L1_Mur3 LINE L1 5302 5375 -922 9 816 3187 34 163 5 chr6 30321257 30321667 -119195370 + MT2C_Mm LTR ERVL 1 475 0 9 816 558 175 62 21 chr6 30321667 30321781 -119195256 + L1_Mur3 LINE L1 5323 5485 -812 9 816 356 200 0 0 chr6 30321781 30321841 -119195196 + B1_Mur4 SINE Alu 1 60 -90 9 816 293 277 27 82 chr6 30321954 30321976 -119195061 + B4A SINE B4 70 85 -207 9 816 546 178 5 11 chr6 30321976 30322084 -119194953 + B1_Mm SINE Alu 1 111 -9 9 816 423 298 90 8 chr6 30322114 30322236 -119194801 + B1F SINE Alu 3 134 -15 9 816 228 67 0 0 chr6 30322239 30322269 -119194768 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 9 816 454 234 81 0 chr6 30322479 30322590 -119194447 - ID_B1 SINE B4 -2 222 103 9 816 426 222 172 0 chr6 30323780 30323879 -119193158 - PB1D7 SINE Alu 0 120 5 9 816 417 265 119 40 chr6 30323940 30324117 -119192920 + B3A SINE B2 2 192 -6 9 816 452 239 49 28 chr6 30324149 30324291 -119192746 + RSINE1 SINE B4 4 148 -17 9 816 625 265 0 15 chr6 30325603 30325737 -119191300 + B1_Mus2 SINE Alu 9 140 -7 9 816 284 254 228 8 chr6 30326177 30326300 -119190737 + Lx7 LINE L1 7063 7212 -484 9 816 4682 179 99 32 chr6 30326693 30327746 -119189291 + Lx9 LINE L1 6515 7637 -7 9 816 396 287 11 0 chr6 30327765 30327859 -119189178 + B4A SINE B4 3 97 -195 9 816 791 268 12 6 chr6 30327867 30328036 -119189001 + B3 SINE B2 43 212 -4 9 816 273 321 62 0 chr6 30328069 30328181 -119188856 + PB1D7 SINE Alu 2 120 0 9 816 277 266 57 46 chr6 30328444 30328543 -119188494 - PB1D7 SINE Alu -27 123 24 9 816 23 68 0 0 chr6 30328751 30328795 -119188242 + AT_rich Low_complexity Low_complexity 1 44 0 9 816 390 250 104 0 chr6 30328814 30328910 -119188127 + ID_B1 SINE B4 89 194 -30 9 816 848 96 43 0 chr6 30329101 30329216 -119187821 + 5S rRNA rRNA 2 121 0 9 816 436 256 73 22 chr6 30329246 30329382 -119187655 + B1F SINE Alu 1 143 -6 9 816 644 183 7 71 chr6 30329428 30329569 -119187468 + B1F2 SINE Alu 12 143 -6 9 816 288 0 0 0 chr6 30329573 30329605 -119187432 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 9 816 676 256 36 6 chr6 30329636 30329801 -119187236 + B3 SINE B2 39 208 -8 9 816 235 122 0 39 chr6 30329840 30329891 -119187146 + GA-rich Low_complexity Low_complexity 4 52 0 9 816 1377 93 16 0 chr6 30329938 30330121 -119186916 + B2_Mm2 SINE B2 1 186 -9 9 816 1160 202 5 5 chr6 30330139 30330348 -119186689 - B3 SINE B2 -6 210 2 9 816 606 214 44 44 chr6 30330353 30330490 -119186547 + B1_Mur1 SINE Alu 13 149 0 9 816 626 258 120 6 chr6 30330494 30330677 -119186360 + B3 SINE B2 2 205 -11 9 816 324 0 0 0 chr6 30331521 30331557 -119185480 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 816 327 25 0 0 chr6 30331574 30331614 -119185423 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 9 816 1366 77 33 0 chr6 30331928 30332109 -119184928 + B2_Mm2 SINE B2 2 188 -7 9 816 279 175 0 0 chr6 30332187 30332227 -119184810 + B1_Mus2 SINE Alu 2 41 -106 9 816 210 271 17 0 chr6 30332428 30332487 -119184550 - ID4 SINE ID -23 60 1 1 816 357 288 63 8 chr6 30332876 30332977 -119184060 - B4A SINE B4 -16 276 169 1 816 692 212 116 46 chr6 30332977 30333150 -119183887 + B3 SINE B2 1 185 -31 1 816 403 255 97 13 chr6 30333144 30333299 -119183738 - B4A SINE B4 -122 170 3 1 816 259 250 15 15 chr6 30333305 30333370 -119183667 - PB1D7 SINE Alu -3 117 53 1 816 698 298 21 0 chr6 30333450 30333638 -119183399 - B3 SINE B2 -24 192 1 1 816 519 246 17 0 chr6 30333864 30333982 -119183055 + B1_Mus2 SINE Alu 1 120 -27 1 816 258 244 67 34 chr6 30333989 30334078 -119182959 - B3A SINE B2 -27 171 80 1 816 811 163 14 0 chr6 30334103 30334244 -119182793 - B1_Mus1 SINE Alu -5 143 1 1 816 201 171 0 0 chr6 30334245 30334280 -119182757 + T-rich Low_complexity Low_complexity 1 35 0 1 816 1422 70 21 0 chr6 30334348 30334534 -119182503 + B2_Mm2 SINE B2 4 193 -2 1 816 192 77 0 0 chr6 30334741 30334767 -119182270 + (T)n Simple_repeat Simple_repeat 1 26 0 1 816 1223 41 0 0 chr6 30334767 30334914 -119182123 - B1_Mus1 SINE Alu 0 148 2 1 816 380 289 105 7 chr6 30334958 30335111 -119181926 + MLT1F2 LTR MaLR 1 168 -392 1 816 607 192 24 55 chr6 30335118 30335245 -119181792 + RSINE1 SINE B4 3 125 -40 1 816 1133 66 0 0 chr6 30335302 30335453 -119181584 + B2_Mm2 SINE B2 2 152 -43 1 816 209 33 0 32 chr6 30335453 30335484 -119181553 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1 816 1051 106 33 16 chr6 30335484 30335515 -119181522 + B2_Mm1t SINE B2 154 187 -6 1 816 707 149 0 32 chr6 30335513 30335638 -119181399 + B1_Mus1 SINE Alu 28 148 0 1 816 384 289 40 0 chr6 30335644 30335742 -119181295 + MLT1F2 LTR MaLR 174 288 -281 1 816 474 268 26 9 chr6 30335751 30335864 -119181173 + B1F SINE Alu 22 136 -13 1 816 378 0 0 0 chr6 30335866 30335908 -119181129 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 816 405 236 90 51 chr6 30335913 30336069 -119180968 + B3A SINE B2 37 198 0 1 816 776 156 0 29 chr6 30336229 30336368 -119180669 + B1_Mus1 SINE Alu 1 135 -13 1 816 285 226 131 0 chr6 30336436 30336520 -119180517 + MIRc SINE MIR 62 156 -112 1 816 393 230 0 0 chr6 30336520 30336594 -119180443 + ID4_ SINE ID 3 76 -7 1 816 261 0 0 0 chr6 30336601 30336630 -119180407 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 1 816 352 254 42 42 chr6 30336770 30336889 -119180148 + PB1D7 SINE Alu 1 119 -1 1 816 944 146 7 14 chr6 30336893 30337039 -119179998 + B1_Mur4 SINE Alu 2 146 -4 1 816 243 0 0 0 chr6 30337039 30337066 -119179971 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 816 765 225 105 0 chr6 30337121 30337312 -119179725 + B3 SINE B2 2 212 -4 1 816 461 177 0 0 chr6 30337884 30337963 -119179074 - PB1D7 SINE Alu 0 120 42 1 816 322 197 0 16 chr6 30337972 30338034 -119179003 - RSINE1 SINE B4 -102 63 3 1 816 1297 58 0 0 chr6 30338131 30338303 -119178734 + B2_Mm2 SINE B2 3 174 -21 1 816 312 158 0 0 chr6 30338310 30338367 -119178670 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 816 464 45 0 15 chr6 30338519 30338587 -119178450 + MT2C_Mm LTR ERVL 409 475 0 1 816 849 127 21 0 chr6 30338618 30338760 -119178277 - B1_Mur4 SINE Alu 0 150 6 1 816 307 317 49 14 chr6 30338798 30338942 -119178095 - B1F SINE Alu 0 149 1 1 816 735 158 0 88 chr6 30339174 30339324 -119177713 + B1_Mur3 SINE Alu 2 138 -11 1 816 315 0 0 0 chr6 30339324 30339359 -119177678 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 816 192 97 0 0 chr6 30339368 30339399 -119177638 + (CAGAA)n Simple_repeat Simple_repeat 2 32 0 1 816 1224 48 0 0 chr6 30339414 30339561 -119177476 + B1_Mus2 SINE Alu 1 147 0 1 816 237 65 0 0 chr6 30339561 30339592 -119177445 + (A)n Simple_repeat Simple_repeat 1 31 0 1 816 1230 95 72 6 chr6 30339594 30339774 -119177263 + B2_Mm2 SINE B2 4 195 0 1 816 322 227 83 21 chr6 30339782 30339926 -119177111 + Charlie4 DNA MER1_type 156 308 -1653 1 816 1162 62 0 0 chr6 30340014 30340159 -119176878 + B1_Mus1 SINE Alu 2 146 -2 1 816 207 0 0 0 chr6 30340160 30340183 -119176854 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 816 1407 79 26 5 chr6 30340449 30340639 -119176398 + B2_Mm2 SINE B2 2 195 0 1 816 470 170 110 0 chr6 30341208 30341308 -119175729 - PB1D9 SINE Alu -1 119 9 1 816 252 0 0 0 chr6 30341308 30341336 -119175701 + (A)n Simple_repeat Simple_repeat 1 28 0 1 816 337 169 0 27 chr6 30341612 30341685 -119175352 - ID4 SINE ID -11 72 2 1 816 843 246 64 5 chr6 30341881 30342085 -119174952 + B3 SINE B2 1 216 0 1 816 579 319 34 10 chr6 30342118 30342324 -119174713 + B3A SINE B2 1 211 -5 1 816 1423 62 40 0 chr6 30342348 30342525 -119174512 + B2_Mm2 SINE B2 2 185 -10 1 816 324 0 0 0 chr6 30342525 30342561 -119174476 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 816 267 79 0 0 chr6 30342624 30342662 -119174375 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 1 816 702 122 0 9 chr6 30342665 30342796 -119174241 - B1_Mur3 SINE Alu -7 142 14 1 816 717 156 141 0 chr6 30343314 30343442 -119173595 + B1_Mus1 SINE Alu 1 146 -2 1 816 556 218 138 23 chr6 30343510 30343684 -119173353 - B2_Mm2 SINE B2 -1 194 1 1 816 597 122 0 0 chr6 30343704 30343819 -119173218 + (TC)n Simple_repeat Simple_repeat 1 115 0 1 816 455 257 9 0 chr6 30343827 30343940 -119173097 - PB1D9 SINE Alu -6 114 1 1 816 430 316 32 6 chr6 30343990 30344146 -119172891 - RSINE1 SINE B4 -3 162 3 1 816 243 0 0 0 chr6 30344297 30344324 -119172713 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 816 285 247 26 0 chr6 30344351 30344428 -119172609 - B3 SINE B2 -137 79 1 1 816 783 59 0 0 chr6 30344437 30344538 -119172499 + (TTTC)n Simple_repeat Simple_repeat 4 104 0 1 816 1233 35 0 0 chr6 30344540 30344681 -119172356 - B1_Mus1 SINE Alu -6 142 2 1 816 2425 160 26 102 chr6 30344782 30345284 -119171753 + RMER4A LTR ERVK 1 464 -2 1 816 342 263 74 0 chr6 30345305 30345400 -119171637 - B4A SINE B4 -17 275 174 1 816 892 78 0 15 chr6 30345410 30345532 -119171505 + B1_Mus1 SINE Alu 19 139 -9 1 816 196 28 54 27 chr6 30345532 30345569 -119171468 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 1 816 324 0 0 0 chr6 30345583 30345619 -119171418 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 816 323 237 77 26 chr6 30345622 30345700 -119171337 + RSINE1 SINE B4 2 83 -82 1 816 739 259 5 45 chr6 30345765 30345812 -119171225 - B4 SINE B4 -14 278 234 1 816 234 0 0 0 chr6 30345812 30345838 -119171199 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 816 1182 63 0 0 chr6 30345846 30345988 -119171049 - B1_Mm SINE Alu -5 142 1 1 816 739 259 5 45 chr6 30345988 30346133 -119170904 - B4 SINE B4 -66 226 85 1 816 347 200 0 13 chr6 30346337 30346413 -119170624 + ID_B1 SINE B4 119 193 -31 1 816 375 60 0 0 chr6 30346415 30346465 -119170572 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 816 396 0 0 0 chr6 30346465 30346509 -119170528 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 816 3154 89 133 8 chr6 30346547 30346654 -119170383 + MT2B LTR ERVL 3 173 -428 1 816 3541 45 28 9 chr6 30346654 30347082 -119169955 - RLTR10C LTR ERVK 0 436 1 1 816 3154 89 133 8 chr6 30347082 30347506 -119169531 + MT2B LTR ERVL 174 600 -1 1 816 604 269 37 21 chr6 30347602 30347792 -119169245 - L1MC1 LINE L1 -13 6320 6128 1 816 553 205 18 3 chr6 30347868 30347979 -119169058 - B1_Mur3 SINE Alu 0 117 1 1 816 262 227 91 26 chr6 30348003 30348080 -119168957 - L1MC5 LINE L1 -72 7889 7808 1 816 675 122 87 31 chr6 30348229 30348356 -119168681 + B1_Mus1 SINE Alu 1 134 -14 1 816 897 234 15 15 chr6 30348397 30348597 -119168440 - B3 SINE B2 -13 203 4 1 816 454 222 107 38 chr6 30348621 30348752 -119168285 - B1_Mur2 SINE Alu -8 141 2 1 816 411 232 81 0 chr6 30348812 30348911 -119168126 - B3A SINE B2 -85 113 7 1 816 916 247 151 24 chr6 30348925 30349223 -119167814 - Lx8 LINE L1 -141 7332 6997 1 816 299 186 126 11 chr6 30349344 30349431 -119167606 - L1MC5 LINE L1 -759 7202 7106 1 816 1221 113 28 11 chr6 30349437 30349616 -119167421 + B2_Mm2 SINE B2 5 186 -9 1 816 1094 221 5 0 chr6 30349675 30349874 -119167163 - B3 SINE B2 -13 203 4 1 816 340 310 45 45 chr6 30349968 30350100 -119166937 - ID_B1 SINE B4 -12 212 81 1 816 862 203 10 26 chr6 30350127 30350319 -119166718 - B3 SINE B2 0 216 28 1 816 216 0 0 0 chr6 30350351 30350375 -119166662 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 816 543 275 53 62 chr6 30350375 30350600 -119166437 - ID_B1 SINE B4 -1 223 1 1 816 213 325 40 16 chr6 30350876 30351001 -119166036 + L4 LINE RTE 1711 1838 -191 1 816 29 45 0 43 chr6 30352022 30352091 -119164946 + GC_rich Low_complexity Low_complexity 1 66 0 1 816 243 88 0 0 chr6 30352593 30352627 -119164410 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 816 201 108 0 0 chr6 30354095 30354132 -119162905 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 1 816 340 259 0 18 chr6 30354349 30354451 -119162586 - B1_Mur2 SINE Alu -13 107 14 1 816 338 321 36 0 chr6 30354721 30354833 -119162204 - PB1D10 SINE Alu 0 117 2 1 816 251 157 20 0 chr6 30355188 30355239 -119161798 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 816 742 262 53 19 chr6 30355292 30355498 -119161539 + B3 SINE B2 1 213 -3 1 816 839 181 0 0 chr6 30355513 30355651 -119161386 + B1_Mur4 SINE Alu 5 142 -8 1 816 21 57 0 0 chr6 30355651 30355686 -119161351 + AT_rich Low_complexity Low_complexity 1 35 0 1 816 24 77 0 0 chr6 30355875 30355927 -119161110 + AT_rich Low_complexity Low_complexity 1 52 0 1 816 630 241 6 95 chr6 30355928 30356107 -119160930 - RSINE1 SINE B4 0 165 3 1 816 281 207 100 75 chr6 30356509 30356629 -119160408 + ID_B1 SINE B4 102 224 0 1 816 314 256 52 2 chr6 30356835 30356941 -119160096 - L1M5 LINE L1 -2226 5656 5549 1 816 231 329 12 12 chr6 30357016 30357096 -119159941 - ID4_ SINE ID -2 81 2 1 816 766 142 30 0 chr6 30357106 30357240 -119159797 - B1_Mur1 SINE Alu -1 148 11 1 816 345 255 64 36 chr6 30357259 30357369 -119159668 - B1F SINE Alu -7 113 1 1 816 918 184 0 78 chr6 30357374 30357580 -119159457 - B3 SINE B2 0 216 27 1 816 768 125 0 0 chr6 30357596 30357716 -119159321 - B1_Mus1 SINE Alu -1 147 28 1 816 297 0 0 0 chr6 30357727 30357760 -119159277 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1 816 1222 35 0 0 chr6 30357760 30357901 -119159136 - B1_Mus1 SINE Alu -7 141 1 1 816 518 167 111 0 chr6 30357931 30358039 -119158998 + B3A SINE B2 2 121 -77 1 816 771 179 58 37 chr6 30358090 30358281 -119158756 + B2_Mm2 SINE B2 1 195 0 1 816 216 67 0 0 chr6 30358327 30358357 -119158680 + (TCCCC)n Simple_repeat Simple_repeat 5 34 0 1 816 384 127 32 0 chr6 30358362 30358425 -119158612 - B1_Mur3 SINE Alu -36 113 49 1 816 524 316 38 0 chr6 30358490 30358648 -119158389 - RSINE1 SINE B4 0 165 2 1 816 1093 50 43 7 chr6 30358732 30358873 -119158164 - B1_Mm SINE Alu 0 147 2 1 816 698 211 58 0 chr6 30358883 30359054 -119157983 - B2_Mm2 SINE B2 -7 188 8 1 816 826 196 7 0 chr6 30359107 30359255 -119157782 - B1_Mur4 SINE Alu -1 149 1 1 816 1136 50 199 0 chr6 30359422 30359583 -119157454 - B2_Mm2 SINE B2 0 195 3 1 816 228 345 58 100 chr6 30359630 30359820 -119157217 - B4 SINE B4 0 292 111 1 816 302 220 134 27 chr6 30359797 30359909 -119157128 - B3A SINE B2 -74 124 1 1 816 578 233 60 27 chr6 30359955 30360105 -119156932 - RSINE1 SINE B4 -1 164 10 1 816 590 256 106 94 chr6 30360136 30360476 -119156561 - L1M4 LINE L1 -397 5781 5438 1 816 324 197 13 26 chr6 30360583 30360661 -119156376 - L1M4 LINE L1 -738 5440 5364 1 816 2845 40 5 3 chr6 30360686 30361060 -119155977 - MTA_Mm LTR MaLR 0 396 22 1 816 512 217 119 46 chr6 30361076 30361337 -119155700 - L1M4 LINE L1 -825 5321 5042 1 816 805 282 60 17 chr6 30361414 30361713 -119155324 - L1M4 LINE L1 -1233 4913 4602 1 816 531 177 28 97 chr6 30361831 30361975 -119155062 - B1_Mur2 SINE Alu -2 147 14 1 816 229 274 73 88 chr6 30361870 30362006 -119155031 - B4 SINE B4 -89 203 70 1 816 338 275 190 28 chr6 30362003 30362145 -119154892 - ID_B1 SINE B4 0 224 60 1 816 222 302 35 35 chr6 30362205 30362363 -119154674 - MIRb SINE MIR -90 178 21 1 816 369 0 0 0 chr6 30362437 30362478 -119154559 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 816 1202 48 0 27 chr6 30362881 30363031 -119154006 - B1_Mus1 SINE Alu 0 148 3 1 816 1465 65 21 0 chr6 30363176 30363362 -119153675 - B2_Mm2 SINE B2 -4 191 2 1 816 618 213 30 30 chr6 30363415 30363546 -119153491 + B1_Mur1 SINE Alu 13 143 -6 1 816 402 275 3 10 chr6 30363653 30363763 -119153274 - PB1D10 SINE Alu -1 116 6 1 816 306 0 0 0 chr6 30363866 30363900 -119153137 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 816 948 64 42 21 chr6 30363900 30364038 -119152999 - B1_Mus1 SINE Alu -6 142 1 1 816 345 191 0 31 chr6 30364117 30364182 -119152855 - ID4 SINE ID -16 67 5 1 816 267 103 0 0 chr6 30364191 30364230 -119152807 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 816 243 0 0 0 chr6 30364230 30364256 -119152781 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 816 313 216 0 0 chr6 30364305 30364356 -119152681 - B1F SINE Alu -98 51 1 1 816 248 289 0 0 chr6 30364310 30364362 -119152675 - B4 SINE B4 -161 131 80 1 816 34 0 0 0 chr6 30364362 30364396 -119152641 + AT_rich Low_complexity Low_complexity 1 34 0 1 816 523 215 191 8 chr6 30364396 30364527 -119152510 - RSINE1 SINE B4 0 165 11 1 816 551 196 12 154 chr6 30364539 30364708 -119152329 - B1_Mur1 SINE Alu 0 149 5 1 816 598 216 244 6 chr6 30364731 30364899 -119152138 - B3 SINE B2 -7 209 2 1 816 1394 63 31 21 chr6 30365275 30365468 -119151569 + B2_Mm2 SINE B2 1 195 0 1 816 532 241 142 21 chr6 30365572 30365762 -119151275 + B4A SINE B4 63 274 -18 1 816 720 193 103 67 chr6 30366217 30366411 -119150626 - B3 SINE B2 0 216 16 1 816 2512 164 76 20 chr6 30366544 30367031 -119150006 - RLTR17 LTR ERVK -81 611 98 1 816 562 196 199 0 chr6 30367206 30367367 -119149670 - B3 SINE B2 -19 197 5 1 816 1256 108 0 6 chr6 30368095 30368272 -119148765 - B2_Mm2 SINE B2 -19 176 1 1 816 248 174 43 0 chr6 30368306 30368352 -119148685 - ORR1B2 LTR MaLR -8 359 312 1 816 299 94 109 0 chr6 30368351 30368415 -119148622 - B2_Mm1a SINE B2 -4 189 119 1 816 559 298 152 19 chr6 30368446 30368716 -119148321 - ORR1C2-int LTR MaLR -1261 319 14 1 816 1150 175 215 19 chr6 30368888 30368959 -119148078 - ORR1C2 LTR MaLR 0 384 298 1 816 3252 143 171 96 chr6 30368959 30369338 -119147699 - RMER17A2 LTR ERVK 0 906 571 1 816 378 0 0 0 chr6 30369338 30369380 -119147657 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 816 3252 143 171 96 chr6 30369380 30369843 -119147194 - RMER17A2 LTR ERVK -336 570 2 1 816 1150 175 215 19 chr6 30369843 30370092 -119146945 - ORR1C2 LTR MaLR -87 297 2 1 816 717 247 179 14 chr6 30370268 30370547 -119146490 - L1MD2 LINE L1 -478 5881 5557 1 816 718 222 8 15 chr6 30370550 30370797 -119146240 + CT-rich Low_complexity Low_complexity 1 245 0 1 816 629 139 30 0 chr6 30370809 30370910 -119146127 - B1_Mur2 SINE Alu -9 140 37 1 816 851 222 48 29 chr6 30371026 30371059 -119145978 - B3 SINE B2 -3 213 185 1 816 1271 174 177 114 chr6 30371059 30371322 -119145715 - MTC LTR MaLR 0 421 121 1 816 296 64 0 21 chr6 30371322 30371370 -119145667 + (CTCG)n Simple_repeat Simple_repeat 2 48 0 1 816 1271 174 177 114 chr6 30371370 30371502 -119145535 - MTC LTR MaLR -301 120 1 1 816 851 222 48 29 chr6 30371502 30371677 -119145360 - B3 SINE B2 -32 184 1 1 816 360 0 0 0 chr6 30371740 30371780 -119145257 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 816 594 160 129 58 chr6 30371793 30371932 -119145105 - B1_Mur1 SINE Alu 0 149 1 1 816 1127 63 21 0 chr6 30371942 30372085 -119144952 - B1_Mus2 SINE Alu -1 146 1 1 816 244 298 64 46 chr6 30372368 30372477 -119144560 + PB1D9 SINE Alu 2 112 -8 1 816 213 39 0 0 chr6 30372644 30372670 -119144367 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1 816 524 215 0 55 chr6 30372675 30372803 -119144234 - B1F2 SINE Alu -20 129 9 1 816 541 233 80 50 chr6 30372834 30373033 -119144004 - L1M4 LINE L1 -1351 4795 4591 1 816 536 208 58 0 chr6 30373717 30373837 -119143200 - B1_Mus1 SINE Alu -14 134 8 1 816 1182 62 7 0 chr6 30373958 30374103 -119142934 + B1_Mus2 SINE Alu 2 147 0 1 816 252 77 0 0 chr6 30374106 30374145 -119142892 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 816 240 311 0 0 chr6 30374410 30374471 -119142566 + C-rich Low_complexity Low_complexity 2 62 0 1 816 249 264 14 14 chr6 30374645 30374718 -119142319 - ID4 SINE ID -9 74 2 1 816 649 239 42 7 chr6 30374803 30374946 -119142091 + B1_Mur2 SINE Alu 2 149 0 1 816 256 45 0 62 chr6 30375035 30375083 -119141954 - L1ME4a LINE L1 -112 6012 5968 1 816 971 268 103 28 chr6 30375134 30375629 -119141408 - L1ME4a LINE L1 -17 6107 5576 1 816 253 40 20 20 chr6 30376927 30376978 -119140059 - B2_Mm2 SINE B2 -8 187 137 1 816 290 122 62 4 chr6 30376968 30377033 -119140004 - B2_Mm2 SINE B2 -102 114 47 1 816 1192 119 23 0 chr6 30377080 30377256 -119139781 - B2_Mm2 SINE B2 -14 181 2 1 816 722 205 50 19 chr6 30378287 30378446 -119138591 + RSINE1 SINE B4 2 165 0 1 816 27 0 0 0 chr6 30378453 30378480 -119138557 + AT_rich Low_complexity Low_complexity 1 27 0 1 816 315 182 148 0 chr6 30378938 30379026 -119138011 + B1_Mur3 SINE Alu 49 149 0 1 816 1282 34 0 0 chr6 30379292 30379439 -119137598 + B1_Mm SINE Alu 1 147 0 1 816 500 218 63 24 chr6 30379665 30379792 -119137245 + B1F SINE Alu 2 133 -16 1 816 281 302 0 94 chr6 30379822 30379928 -119137109 + ID_B1 SINE B4 2 97 -127 1 816 451 248 47 31 chr6 30380030 30380144 -119136893 + ID_B1 SINE B4 94 209 -15 1 816 207 0 0 0 chr6 30380144 30380167 -119136870 + (CCA)n Simple_repeat Simple_repeat 1 23 0 1 816 451 248 47 31 chr6 30380167 30380181 -119136856 + ID_B1 SINE B4 210 223 -1 1 816 729 208 53 44 chr6 30380227 30380433 -119136604 + B3 SINE B2 6 213 -3 1 816 193 281 35 0 chr6 30382001 30382058 -119134979 + L2c LINE L2 3256 3314 -73 1 816 363 241 0 11 chr6 30382160 30382248 -119134789 - B1_Mur1 SINE Alu -1 148 62 1 816 370 297 118 65 chr6 30382524 30382787 -119134250 + B4A SINE B4 16 292 0 1 816 259 267 94 22 chr6 30382861 30382999 -119134038 + L1ME3A LINE L1 5254 5401 -772 1 816 620 246 7 7 chr6 30383003 30383142 -119133895 + B1_Mur3 SINE Alu 5 143 -6 1 816 411 354 112 26 chr6 30383209 30383694 -119133343 + L1ME3A LINE L1 5386 5912 -532 1 816 776 122 71 7 chr6 30383701 30383841 -119133196 - B1_Mur3 SINE Alu 0 149 1 1 816 461 279 1 3 chr6 30383957 30384067 -119132970 + B3 SINE B2 2 109 -84 1 816 21 0 0 0 chr6 30384258 30384279 -119132758 + AT_rich Low_complexity Low_complexity 1 21 0 1 816 677 238 111 21 chr6 30384477 30384666 -119132371 + B3 SINE B2 4 209 -7 1 816 521 298 30 0 chr6 30384739 30384870 -119132167 + B1_Mur1 SINE Alu 3 137 -12 1 816 432 261 159 0 chr6 30384952 30385090 -119131947 + ID_B1 SINE B4 12 171 -53 1 816 356 278 45 27 chr6 30385006 30385117 -119131920 + PB1D10 SINE Alu 5 117 0 1 816 470 17 17 0 chr6 30385561 30385620 -119131417 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 816 1223 61 0 0 chr6 30385887 30386034 -119131003 + B1_Mus2 SINE Alu 1 147 0 1 816 1088 104 0 0 chr6 30386426 30386570 -119130467 - B1_Mus1 SINE Alu 0 148 5 1 816 327 224 0 29 chr6 30388567 30388636 -119128401 - ID4_ SINE ID -11 72 6 1 816 354 286 35 18 chr6 30388640 30388754 -119128283 - B1F1 SINE Alu -33 116 1 1 816 267 355 40 0 chr6 30388771 30388847 -119128190 + ID4 SINE ID 5 83 0 1 816 285 217 16 16 chr6 30390311 30390372 -119126665 + MIR SINE MIR 8 68 -194 1 816 349 273 6 96 chr6 30390391 30390557 -119126480 - YREP_Mm Unknown Unknown -1480 332 182 1 816 847 202 17 5 chr6 30390415 30390570 -119126467 + B1F SINE Alu 13 311 0 1 816 1143 62 7 14 chr6 30390862 30391010 -119126027 - B1_Mus2 SINE Alu 0 147 1 1 816 1217 54 0 0 chr6 30391185 30391332 -119125705 + B1_Mus1 SINE Alu 2 148 0 1 816 741 250 25 111 chr6 30392130 30392445 -119124592 - B4 SINE B4 0 292 5 1 816 260 91 23 0 chr6 30393301 30393345 -119123692 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 816 412 305 53 8 chr6 30393356 30393488 -119123549 - RSINE1 SINE B4 -25 140 3 1 816 232 184 53 0 chr6 30393510 30393586 -119123451 + T-rich Low_complexity Low_complexity 1 80 0 1 816 542 273 21 14 chr6 30393586 30393731 -119123306 - B1F SINE Alu 0 149 4 1 816 868 221 49 5 chr6 30393758 30393963 -119123074 - B3 SINE B2 0 216 3 1 816 376 303 28 0 chr6 30394009 30394118 -119122919 - B3A SINE B2 -84 114 3 1 816 369 238 116 75 chr6 30394118 30394274 -119122763 + MT2B LTR ERVL 116 278 -323 1 816 929 145 7 0 chr6 30394162 30394300 -119122737 + B1_Mus1 SINE Alu 10 148 0 1 816 549 53 263 0 chr6 30395130 30395225 -119121812 + B1_Mur4 SINE Alu 22 141 -9 1 816 628 201 225 0 chr6 30395304 30395473 -119121564 + B3 SINE B2 2 208 -8 1 816 370 291 150 72 chr6 30395511 30395542 -119121495 - MT2A LTR ERVL 0 493 463 1 816 837 47 0 0 chr6 30395542 30395648 -119121389 + (CA)n Simple_repeat Simple_repeat 2 107 0 1 816 768 195 103 114 chr6 30395648 30395997 -119121040 - MT2A LTR ERVL -72 529 9 1 816 279 327 9 0 chr6 30396422 30396532 -119120505 - L1M5 LINE L1 -305 5819 5709 1 816 428 221 128 29 chr6 30397719 30397891 -119119146 + B3A SINE B2 1 189 -9 1 816 249 235 186 0 chr6 30399156 30399258 -119117779 + Charlie8 DNA MER1_type 125 245 -2183 1 816 940 92 0 0 chr6 30399938 30400068 -119116969 + B1_Mur4 SINE Alu 20 149 -1 1 816 314 309 41 10 chr6 30400142 30400240 -119116797 + PB1 SINE Alu 25 125 -2 1 816 1351 101 26 0 chr6 30405900 30406089 -119110948 + B2_Mm2 SINE B2 2 195 0 1 816 284 117 177 32 chr6 30406268 30406330 -119110707 + B1F1 SINE Alu 77 147 -2 1 816 3492 52 28 0 chr6 30406595 30407019 -119110018 - RLTR10C LTR ERVK 0 436 1 1 816 576 241 40 20 chr6 30407142 30407290 -119109747 + MER3 DNA MER1_type 33 183 -26 1 816 24 0 0 0 chr6 30407936 30407960 -119109077 + AT_rich Low_complexity Low_complexity 1 24 0 1 816 1164 62 0 7 chr6 30407970 30408117 -119108920 - B1_Mus2 SINE Alu 0 147 2 1 816 387 0 0 0 chr6 30408548 30408591 -119108446 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 12 210 284 0 98 chr6 30408639 30408721 -119108316 + ID4_ SINE ID 1 74 -9 1 817 549 155 54 62 chr6 30409552 30409700 -119107337 + B1_Mur1 SINE Alu 1 147 0 1 817 305 319 150 40 chr6 30412136 30412489 -119104548 + L2c LINE L2 2964 3372 -15 1 817 803 246 144 27 chr6 30413156 30413490 -119103547 - L5 LINE RTE -5 2260 1888 1 817 544 203 154 0 chr6 30413529 30413652 -119103385 + B1F SINE Alu 6 147 -2 1 817 328 258 48 40 chr6 30413741 30413866 -119103171 - L5 LINE RTE -605 1660 1535 1 817 923 65 40 8 chr6 30414004 30414129 -119102908 - B1_Mm SINE Alu -18 129 1 1 817 256 242 45 0 chr6 30415075 30415141 -119101896 + CT-rich Low_complexity Low_complexity 3 71 0 1 817 240 300 179 0 chr6 30415142 30415243 -119101794 - PB1D10 SINE Alu -7 120 3 1 817 257 338 12 0 chr6 30415525 30415605 -119101432 - ID4_ SINE ID -2 81 1 1 817 627 24 0 12 chr6 30416006 30416091 -119100946 - L1Md_T LINE L1 0 6582 6499 1 817 402 143 0 0 chr6 30417739 30417830 -119099207 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 817 411 179 26 13 chr6 30417897 30418050 -119098987 + (CAGA)n Simple_repeat Simple_repeat 2 156 0 1 817 393 70 0 0 chr6 30418037 30418094 -119098943 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 817 294 183 211 0 chr6 30418284 30418355 -119098682 + B4 SINE B4 2 87 -205 1 817 1028 99 35 0 chr6 30418363 30418504 -119098533 + B1_Mus1 SINE Alu 1 146 -2 1 817 186 71 0 0 chr6 30418504 30418532 -119098505 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 817 299 96 0 19 chr6 30418537 30418590 -119098447 + (GAAAA)n Simple_repeat Simple_repeat 3 54 0 1 817 701 202 23 0 chr6 30418600 30418729 -119098308 + B4 SINE B4 82 213 -79 1 817 385 309 109 26 chr6 30420316 30420472 -119096565 + MER45A DNA Tip100 1 169 -9 1 817 396 257 13 16 chr6 30420802 30420916 -119096121 + MLT1J LTR MaLR 68 183 -329 1 817 668 213 29 22 chr6 30420955 30421094 -119095943 - B3 SINE B2 0 216 77 1 817 1195 55 7 0 chr6 30421149 30421294 -119095743 - B1_Mus2 SINE Alu 0 147 2 1 817 989 66 59 0 chr6 30421326 30421462 -119095575 + B2_Mm2 SINE B2 2 145 -50 1 817 365 127 9 179 chr6 30421496 30421563 -119095474 + RMER4A LTR ERVK 8 57 -409 1 817 1103 88 0 0 chr6 30421563 30421700 -119095337 + B1_Mus2 SINE Alu 1 137 -10 1 817 183 42 0 0 chr6 30421700 30421724 -119095313 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 817 365 127 9 179 chr6 30421724 30421761 -119095276 + RMER4A LTR ERVK 58 94 -372 1 817 307 68 0 0 chr6 30421756 30421800 -119095237 + B1_Mus2 SINE Alu 104 147 0 1 817 586 128 64 0 chr6 30421785 30421879 -119095158 + RMER4A LTR ERVK 30 129 -456 1 817 1704 95 56 0 chr6 30421879 30422131 -119094906 + RMER4A LTR ERVK 80 345 -121 1 817 477 50 0 0 chr6 30422132 30422192 -119094845 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 817 319 93 19 0 chr6 30422212 30422266 -119094771 + RMER4A LTR ERVK 412 466 0 1 817 1004 83 90 0 chr6 30422543 30422687 -119094350 + B2_Mm2 SINE B2 2 158 -37 1 817 327 25 0 0 chr6 30422688 30422728 -119094309 + (CAAT)n Simple_repeat Simple_repeat 2 41 0 1 817 261 0 0 0 chr6 30422771 30422800 -119094237 + (ATATG)n Simple_repeat Simple_repeat 4 32 0 1 817 7661 58 12 16 chr6 30423017 30423861 -119093176 - L1_Mus3 LINE L1 -1 6637 5798 1 817 1633 21 21 0 chr6 30423861 30424049 -119092988 - B2_Mm1a SINE B2 0 193 2 1 817 7661 58 12 16 chr6 30424049 30424195 -119092842 - L1_Mus3 LINE L1 -841 5797 5651 1 817 510 217 0 0 chr6 30424230 30424322 -119092715 + B3A SINE B2 91 182 -16 1 817 914 150 20 7 chr6 30424710 30424858 -119092179 + B1_Mur4 SINE Alu 1 150 0 1 817 22 35 0 0 chr6 30424869 30424898 -119092139 + AT_rich Low_complexity Low_complexity 1 29 0 1 817 1249 48 0 0 chr6 30424910 30425056 -119091981 + B1_Mus2 SINE Alu 2 147 0 1 817 925 94 0 30 chr6 30425075 30425207 -119091830 + B2_Mm2 SINE B2 2 129 -66 1 817 450 0 0 0 chr6 30425215 30425265 -119091772 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 1 817 1205 94 39 6 chr6 30425279 30425460 -119091577 + B2_Mm2 SINE B2 1 187 -8 1 817 296 273 26 13 chr6 30425870 30425948 -119091089 + PB1D10 SINE Alu 10 88 -29 1 817 285 222 42 0 chr6 30425981 30426053 -119090984 + ID4 SINE ID 7 81 -2 1 817 410 316 91 85 chr6 30426181 30426586 -119090451 + MLT1G1 LTR MaLR 1 405 -190 1 817 333 0 0 0 chr6 30426905 30426942 -119090095 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 817 434 127 0 78 chr6 30427046 30427123 -119089914 + B1_Mur3 SINE Alu 45 115 -34 1 817 721 225 86 0 chr6 30427766 30427917 -119089120 - RSINE1 SINE B4 0 165 2 1 817 395 295 2 25 chr6 30428817 30428929 -119088108 + PB1D10 SINE Alu 1 109 -11 1 817 257 410 43 36 chr6 30428929 30428955 -119088082 + B4A SINE B4 86 224 -68 1 817 483 214 128 0 chr6 30429070 30429187 -119087850 - B1_Mur4 SINE Alu -6 144 13 1 817 194 343 137 57 chr6 30430155 30430733 -119086304 - L2 LINE L2 -571 2848 2225 1 817 246 253 151 2 chr6 30431082 30431168 -119085869 + ID4_ SINE ID 1 97 -55 1 817 342 312 18 18 chr6 30431255 30431369 -119085668 - PB1D10 SINE Alu 0 117 4 1 817 1064 112 0 0 chr6 30431936 30432079 -119084958 + B1_Mur4 SINE Alu 1 143 -7 1 817 826 176 7 7 chr6 30433293 30433430 -119083607 - B1_Mur3 SINE Alu 0 149 13 1 817 242 178 0 0 chr6 30433569 30433614 -119083423 - ORR1D1 LTR MaLR 0 374 330 1 817 735 163 100 8 chr6 30433619 30433749 -119083288 + B1_Mur3 SINE Alu 6 147 -2 1 817 264 211 241 38 chr6 30433752 30433831 -119083206 - ORR1D1 LTR MaLR -25 349 255 1 817 592 177 97 0 chr6 30433836 30433949 -119083088 - ORR1D1 LTR MaLR -234 140 17 1 817 1077 88 0 20 chr6 30433976 30434126 -119082911 - B1_Mus2 SINE Alu 0 147 1 1 817 366 258 182 16 chr6 30434404 30434530 -119082507 - B1F2 SINE Alu -1 148 2 1 817 774 215 17 39 chr6 30434563 30434742 -119082295 - B3A SINE B2 -6 192 18 1 817 236 267 22 55 chr6 30435120 30435211 -119081826 + MT2B LTR ERVL 200 287 -314 1 817 496 157 86 29 chr6 30435189 30435294 -119081743 + PB1D9 SINE Alu 9 119 -1 1 817 846 232 40 0 chr6 30435370 30435568 -119081469 - B3 SINE B2 -10 206 1 1 817 752 170 14 49 chr6 30436033 30436175 -119080862 + B1_Mus2 SINE Alu 2 138 -9 1 817 243 0 0 0 chr6 30436175 30436202 -119080835 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 817 674 128 175 39 chr6 30436208 30436362 -119080675 + B2_Mm2 SINE B2 2 176 -19 1 817 180 0 0 0 chr6 30436374 30436394 -119080643 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 817 185 333 89 9 chr6 30437739 30437851 -119079186 - L2b LINE L2 -188 3187 3067 1 817 802 43 248 8 chr6 30437897 30438014 -119079023 - B1_Mus1 SINE Alu 0 148 4 1 817 21 0 0 0 chr6 30438330 30438351 -119078686 + AT_rich Low_complexity Low_complexity 1 21 0 1 817 330 261 163 0 chr6 30438484 30438576 -119078461 + PB1D10 SINE Alu 7 113 -14 1 817 311 348 101 54 chr6 30438782 30439040 -119077997 + L1ME4a LINE L1 5614 5883 -241 1 817 245 365 12 12 chr6 30439042 30439075 -119077962 + B4 SINE B4 53 85 -207 1 817 282 306 0 0 chr6 30439075 30439149 -119077888 + B1_Mus2 SINE Alu 1 74 -75 1 817 324 272 12 0 chr6 30439204 30439285 -119077752 + ID4 SINE ID 2 83 0 1 817 917 150 0 20 chr6 30439829 30439979 -119077058 + B1_Mus1 SINE Alu 1 147 -1 1 817 1321 98 0 30 chr6 30439986 30440185 -119076852 + B2_Mm2 SINE B2 3 195 0 1 817 263 274 0 0 chr6 30440281 30440332 -119076705 - ID4 SINE ID -17 66 16 1 817 362 265 87 19 chr6 30440346 30440450 -119076587 - PB1 SINE Alu -2 125 15 1 817 212 262 114 45 chr6 30440379 30440467 -119076570 - B4A SINE B4 -119 173 80 1 817 239 258 135 0 chr6 30441345 30441434 -119075603 + L1MC5 LINE L1 7476 7576 -385 1 817 215 186 181 28 chr6 30441778 30441850 -119075187 - BC1_Mm scRNA scRNA -55 97 15 1 817 438 299 37 15 chr6 30442929 30443065 -119073972 + L2a LINE L2 3287 3425 -1 1 817 929 221 4 145 chr6 30443113 30443362 -119073675 - B3 SINE B2 -2 214 1 1 817 1161 43 0 0 chr6 30443423 30443562 -119073475 - B1_Mus2 SINE Alu -8 139 1 1 817 511 272 112 6 chr6 30443584 30443754 -119073283 - B3A SINE B2 -8 190 3 1 817 222 37 0 0 chr6 30443842 30443869 -119073168 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 817 468 257 181 58 chr6 30444208 30444568 -119072469 + L1MB7 LINE L1 5696 6099 -85 1 817 525 291 7 14 chr6 30445122 30445265 -119071772 + B1F SINE Alu 5 146 -3 1 817 213 65 0 0 chr6 30445731 30445762 -119071275 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 817 1138 59 0 0 chr6 30445762 30445897 -119071140 - B1_Mus2 SINE Alu -9 138 4 1 817 301 289 59 52 chr6 30445898 30446033 -119071004 - B3A SINE B2 -1 197 62 1 817 245 293 72 12 chr6 30446315 30446398 -119070639 - PB1D10 SINE Alu -29 88 1 1 817 1109 204 29 5 chr6 30446949 30447156 -119069881 - B3 SINE B2 -2 214 3 1 817 261 253 24 48 chr6 30447546 30447629 -119069408 - ID4 SINE ID 0 83 3 1 817 23 0 0 0 chr6 30448028 30448051 -119068986 + AT_rich Low_complexity Low_complexity 1 23 0 1 817 22 35 0 0 chr6 30448983 30449012 -119068025 + AT_rich Low_complexity Low_complexity 1 29 0 1 817 252 0 0 0 chr6 30449434 30449462 -119067575 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 817 287 280 56 0 chr6 30449774 30449881 -119067156 + L1MC4 LINE L1 6701 6813 -1229 1 817 679 218 21 7 chr6 30450108 30450251 -119066786 - B1_Mur2 SINE Alu 0 149 5 1 817 449 292 21 21 chr6 30450259 30450399 -119066638 + B4 SINE B4 118 257 -35 1 817 477 302 40 0 chr6 30450510 30450636 -119066401 + B1F SINE Alu 18 148 -1 1 817 507 95 0 0 chr6 30452170 30452244 -119064793 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 1 817 1100 94 0 18 chr6 30452244 30452407 -119064630 - B2_Mm2 SINE B2 -34 161 2 1 817 328 284 26 35 chr6 30452435 30452548 -119064489 + ID_B1 SINE B4 104 215 -9 1 817 306 70 0 0 chr6 30452558 30452574 -119064463 + (A)n Simple_repeat Simple_repeat 1 16 0 1 817 1214 54 0 0 chr6 30452574 30452721 -119064316 + B1_Mm SINE Alu 1 147 0 1 817 306 70 0 0 chr6 30452721 30452747 -119064290 + (A)n Simple_repeat Simple_repeat 1 26 0 1 817 292 215 101 112 chr6 30452754 30452843 -119064194 + RSINE1 SINE B4 2 89 -76 1 817 1684 21 5 0 chr6 30452884 30453076 -119063961 + B2_Mm1t SINE B2 1 193 0 1 817 335 226 90 75 chr6 30453092 30453226 -119063811 + ID_B1 SINE B4 89 224 0 1 817 861 159 193 28 chr6 30453245 30453426 -119063611 + B3 SINE B2 1 211 -5 1 817 252 278 52 0 chr6 30453556 30453653 -119063384 - L1M5 LINE L1 -344 5780 5679 1 817 380 277 22 44 chr6 30453721 30453857 -119063180 - RSINE1 SINE B4 -6 159 27 1 817 248 301 84 0 chr6 30454233 30454316 -119062721 - B4 SINE B4 -169 123 34 1 817 937 184 53 29 chr6 30454336 30454543 -119062494 + B3 SINE B2 2 213 -3 1 817 899 116 29 0 chr6 30455097 30455235 -119061802 - B1_Mur4 SINE Alu -7 143 2 1 817 664 126 67 0 chr6 30456019 30456138 -119060899 - B1_Mus1 SINE Alu 0 148 22 1 817 323 284 0 0 chr6 30456168 30456242 -119060795 - PB1D10 SINE Alu -8 109 36 1 817 506 201 101 29 chr6 30456272 30456410 -119060627 + B1_Mur2 SINE Alu 2 149 0 1 817 25 31 0 0 chr6 30456436 30456468 -119060569 + AT_rich Low_complexity Low_complexity 1 32 0 1 817 479 282 57 0 chr6 30456970 30457094 -119059943 - RSINE1 SINE B4 -33 132 2 1 817 29 0 0 45 chr6 30457094 30457119 -119059918 + AT_rich Low_complexity Low_complexity 1 25 0 1 817 1441 62 6 0 chr6 30457119 30457295 -119059742 - B2_Mm1a SINE B2 -16 177 1 1 817 29 0 0 45 chr6 30457295 30457313 -119059724 + AT_rich Low_complexity Low_complexity 1 17 0 1 817 435 228 96 9 chr6 30457679 30457794 -119059243 - B3 SINE B2 -90 126 2 1 817 520 219 0 0 chr6 30457830 30457926 -119059111 - B1_Mus1 SINE Alu -52 96 1 1 817 383 225 49 98 chr6 30457926 30457950 -119059087 - MT2B LTR ERVL -350 248 135 1 817 366 230 45 22 chr6 30458198 30458287 -119058750 - PB1D7 SINE Alu -2 118 28 1 817 343 202 128 29 chr6 30460516 30460618 -119056419 + PB1D9 SINE Alu 1 112 -8 1 817 1170 142 11 0 chr6 30460886 30461062 -119055975 - B2_Mm1t SINE B2 -14 179 2 1 817 446 174 0 9 chr6 30461073 30461168 -119055869 + CT-rich Low_complexity Low_complexity 16 110 0 1 817 1124 55 7 14 chr6 30461168 30461316 -119055721 - B1_Mm SINE Alu 0 147 1 1 817 446 174 0 9 chr6 30461316 30461330 -119055707 + polypyrimidine Low_complexity Low_complexity 2 15 0 1 817 382 286 64 45 chr6 30461501 30461721 -119055316 - MLT1B LTR MaLR -52 338 115 1 817 372 303 55 0 chr6 30461768 30461913 -119055124 - RSINE1 SINE B4 -2 163 11 1 817 769 135 8 0 chr6 30462666 30462799 -119054238 + B1_Mur4 SINE Alu 11 144 -6 1 817 270 0 0 0 chr6 30463070 30463100 -119053937 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 817 1133 84 0 0 chr6 30463100 30463254 -119053783 - B2_Mm2 SINE B2 -40 155 2 1 817 302 277 0 57 chr6 30464207 30464295 -119052742 - MIR SINE MIR -85 123 41 1 817 634 190 14 34 chr6 30465473 30465620 -119051417 + ID_B1 SINE B4 79 222 -2 1 817 1174 61 0 7 chr6 30465964 30466112 -119050925 - B1_Mus2 SINE Alu 0 147 1 1 817 186 71 0 0 chr6 30466172 30466200 -119050837 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 817 338 316 17 17 chr6 30466268 30466384 -119050653 + PB1D10 SINE Alu 2 117 0 1 817 301 173 0 0 chr6 30466737 30466789 -119050248 - PB1D10 SINE Alu -29 88 37 1 817 204 260 0 0 chr6 30466805 30466843 -119050194 + T-rich Low_complexity Low_complexity 36 73 0 1 817 868 144 20 20 chr6 30466843 30466992 -119050045 - B1_Mur3 SINE Alu 0 149 1 1 817 204 260 0 0 chr6 30466992 30467026 -119050011 + T-rich Low_complexity Low_complexity 2 35 0 1 817 489 211 126 60 chr6 30467044 30467195 -119049842 - RSINE1 SINE B4 -3 162 2 1 817 1587 310 120 8 chr6 30467842 30468602 -119048435 - MER63C DNA AcHobo -79 851 7 1 817 370 107 0 0 chr6 30469027 30469083 -119047954 + B1_Mus2 SINE Alu 4 59 -88 1 817 258 105 0 0 chr6 30469104 30469142 -119047895 + (A)n Simple_repeat Simple_repeat 1 38 0 1 817 689 235 0 45 chr6 30469175 30469331 -119047706 - B1_Mur4 SINE Alu -1 149 1 1 817 733 234 0 0 chr6 30470708 30470853 -119046184 - B1_Mur1 SINE Alu -3 146 2 1 817 455 256 36 50 chr6 30470886 30471026 -119046011 - MER31B LTR ERV1 -328 138 1 1 817 579 239 7 0 chr6 30471431 30471489 -119045548 + ID SINE ID 23 81 -143 1 817 430 202 39 0 chr6 30471489 30471593 -119045444 + PB1D10 SINE Alu 1 108 -9 1 817 969 137 14 0 chr6 30471965 30472111 -119044926 - B1_Mus1 SINE Alu 0 148 1 1 817 1134 124 0 3 chr6 30472468 30472807 -119044230 + (TG)n Simple_repeat Simple_repeat 1 338 0 1 817 310 297 132 12 chr6 30473290 30473457 -119043580 - MIRb SINE MIR -9 259 73 1 817 712 231 25 0 chr6 30473524 30473684 -119043353 - RSINE1 SINE B4 0 165 2 1 817 642 279 38 11 chr6 30473713 30473898 -119043139 - B3A SINE B2 -7 191 2 1 817 549 223 18 0 chr6 30473914 30474026 -119043011 - PB1D9 SINE Alu -6 114 1 1 817 756 181 13 65 chr6 30474616 30474770 -119042267 - B1_Mus1 SINE Alu 0 148 3 1 817 213 65 0 0 chr6 30474778 30474809 -119042228 + (T)n Simple_repeat Simple_repeat 1 31 0 1 817 1173 62 7 0 chr6 30474810 30474956 -119042081 - B1_Mus2 SINE Alu 0 147 1 1 817 406 271 43 38 chr6 30475590 30475774 -119041263 - MamRep434 DNA TcMar -28 398 214 1 817 543 242 45 59 chr6 30475811 30476013 -119041024 - MamRep434 DNA TcMar -210 216 18 1 817 192 77 0 0 chr6 30476504 30476530 -119040507 + (T)n Simple_repeat Simple_repeat 1 26 0 1 817 291 296 101 36 chr6 30477025 30477193 -119039844 + MLT1L LTR MaLR 141 319 -291 1 817 351 0 0 0 chr6 30477303 30477342 -119039695 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 817 238 218 0 114 chr6 30477344 30477432 -119039605 - B1F1 SINE Alu -60 89 12 1 817 588 200 80 0 chr6 30477482 30477607 -119039430 - B1_Mur1 SINE Alu -5 144 10 1 817 22 0 0 0 chr6 30477609 30477631 -119039406 + AT_rich Low_complexity Low_complexity 1 22 0 1 817 573 239 27 27 chr6 30477637 30477783 -119039254 + B1_Mur1 SINE Alu 3 148 -1 1 817 386 312 117 66 chr6 30477838 30478051 -119038986 - ID_B1 SINE B4 0 224 1 1 817 353 224 67 42 chr6 30479528 30479632 -119037405 - B1F2 SINE Alu -41 108 11 1 817 250 369 54 0 chr6 30479538 30479649 -119037388 - ID_B1 SINE B4 -38 186 70 1 817 270 0 0 0 chr6 30479765 30479795 -119037242 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 1 817 201 250 0 0 chr6 30479795 30479835 -119037202 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 817 1117 215 15 0 chr6 30480542 30480747 -119036290 + B3 SINE B2 4 211 -5 1 817 29 0 0 0 chr6 30480764 30480793 -119036244 + AT_rich Low_complexity Low_complexity 1 29 0 1 817 949 160 187 32 chr6 30480793 30480980 -119036057 - B3 SINE B2 0 216 1 1 817 210 171 0 0 chr6 30481087 30481122 -119035915 + T-rich Low_complexity Low_complexity 1 35 0 1 817 793 133 22 15 chr6 30481122 30481259 -119035778 - B1_Mus2 SINE Alu 0 147 10 1 817 350 259 45 16 chr6 30481338 30481500 -119035537 + L1M LINE L1 5262 5421 -703 1 817 189 0 0 0 chr6 30482028 30482049 -119034988 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 1 817 821 168 7 13 chr6 30482381 30482532 -119034505 - B1_Mur4 SINE Alu 0 150 1 1 817 514 235 8 8 chr6 30482533 30482653 -119034384 - PB1D9 SINE Alu 0 120 1 1 817 24 0 0 0 chr6 30483119 30483143 -119033894 + AT_rich Low_complexity Low_complexity 1 24 0 1 817 413 236 46 54 chr6 30483474 30483604 -119033433 - MER57A-int LTR ERV1 -237 5950 5822 1 817 385 178 291 0 chr6 30483766 30483923 -119033114 + B3 SINE B2 8 215 -1 1 817 21 36 0 0 chr6 30483954 30483982 -119033055 + AT_rich Low_complexity Low_complexity 1 28 0 1 817 351 60 0 0 chr6 30483998 30484048 -119032989 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 817 259 254 56 0 chr6 30484048 30484119 -119032918 - RSINE1 SINE B4 -17 148 74 1 817 211 211 113 0 chr6 30484201 30484272 -119032765 - RSINE1 SINE B4 -84 81 3 1 817 488 236 0 0 chr6 30484360 30484449 -119032588 - B1F1 SINE Alu -56 93 5 1 817 617 223 0 29 chr6 30484703 30484847 -119032190 - B3A SINE B2 -39 156 29 1 817 295 163 0 0 chr6 30484848 30484897 -119032140 + B1F1 SINE Alu 70 118 -31 1 817 687 250 7 0 chr6 30484931 30485079 -119031958 + B1F SINE Alu 1 149 0 1 817 237 132 0 0 chr6 30485368 30485406 -119031631 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 817 790 119 0 15 chr6 30485768 30485774 -119031263 + (TTC)n Simple_repeat Simple_repeat 1 6 0 1 817 1431 50 0 0 chr6 30485774 30485954 -119031083 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 817 790 119 0 15 chr6 30485954 30486083 -119030954 + (TTC)n Simple_repeat Simple_repeat 2 129 0 1 817 582 179 7 60 chr6 30486089 30486238 -119030799 - B1_Mur3 SINE Alu 0 149 9 1 817 291 259 112 62 chr6 30486368 30486557 -119030480 - B3A SINE B2 -6 189 3 1 817 189 0 0 0 chr6 30486681 30486702 -119030335 + (T)n Simple_repeat Simple_repeat 1 21 0 1 817 1300 14 0 0 chr6 30486702 30486849 -119030188 - B1_Mus2 SINE Alu 0 147 1 1 817 201 259 23 12 chr6 30487212 30487298 -119029739 + (CAA)n Simple_repeat Simple_repeat 2 88 0 1 817 418 272 23 39 chr6 30487322 30487391 -119029646 + ID_B1 SINE B4 79 142 -82 1 817 1116 163 16 0 chr6 30487391 30487581 -119029456 + B2_Mm1t SINE B2 1 193 0 1 817 418 272 23 39 chr6 30487581 30487641 -119029396 + ID_B1 SINE B4 143 205 -19 1 817 215 93 23 0 chr6 30487647 30487690 -119029347 + (CAA)n Simple_repeat Simple_repeat 1 44 0 1 817 308 280 188 43 chr6 30487772 30487910 -119029127 - RSINE1 SINE B4 0 165 8 1 817 218 309 49 12 chr6 30488119 30488201 -119028836 - B1F2 SINE Alu -63 86 2 1 817 318 285 7 91 chr6 30488211 30488354 -119028683 - L1MD3 LINE L1 -1 7994 7864 1 817 362 223 75 28 chr6 30489111 30489217 -119027820 + L1MA10 LINE L1 6192 6302 -32 1 817 267 316 21 10 chr6 30489359 30489455 -119027582 + CT-rich Low_complexity Low_complexity 1 97 0 1 817 355 263 74 0 chr6 30489458 30489553 -119027484 - PB1D10 SINE Alu -15 102 1 1 817 837 137 0 21 chr6 30489561 30489703 -119027334 - B1_Mur4 SINE Alu -1 149 11 1 817 290 269 54 63 chr6 30489606 30489717 -119027320 - B4A SINE B4 -98 194 85 1 817 495 187 0 0 chr6 30489827 30489918 -119027119 - B3 SINE B2 -124 92 2 1 817 731 253 7 0 chr6 30489945 30490010 -119027027 + ID SINE ID 16 81 -143 1 817 467 235 17 25 chr6 30490010 30490128 -119026909 + PB1D10 SINE Alu 1 117 0 1 817 213 133 0 62 chr6 30490128 30490176 -119026861 + A-rich Low_complexity Low_complexity 1 45 0 1 817 189 132 0 0 chr6 30490220 30490258 -119026779 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 1 817 372 354 0 0 chr6 30490650 30490763 -119026274 + ID_B1 SINE B4 81 193 -31 1 817 641 167 8 0 chr6 30490764 30490890 -119026147 + GA-rich Low_complexity Low_complexity 1 127 0 1 817 302 304 14 56 chr6 30492676 30492819 -119024218 - B1F SINE Alu -2 147 11 1 817 261 57 0 0 chr6 30493641 30493676 -119023361 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1 817 198 0 0 0 chr6 30496336 30496358 -119020679 + (GGGTG)n Simple_repeat Simple_repeat 1 22 0 1 817 27 0 0 0 chr6 30496432 30496459 -119020578 + AT_rich Low_complexity Low_complexity 1 27 0 1 817 211 234 0 21 chr6 30497308 30497356 -119019681 + CT-rich Low_complexity Low_complexity 59 105 0 1 817 207 231 0 0 chr6 30497402 30497441 -119019596 + T-rich Low_complexity Low_complexity 1 39 0 1 817 209 179 0 0 chr6 30497537 30497576 -119019461 + G-rich Low_complexity Low_complexity 1 39 0 1 817 182 118 29 0 chr6 30497659 30497693 -119019344 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 817 183 42 0 0 chr6 30497969 30497993 -119019044 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 817 197 65 0 31 chr6 30498325 30498357 -119018680 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 817 369 0 0 0 chr6 30499031 30499072 -119017965 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 1 817 360 338 12 48 chr6 30500001 30500169 -119016868 - AmnSINE1 SINE SINE -96 479 318 1 817 200 59 0 29 chr6 30502356 30502391 -119014646 + (TTGGGG)n Simple_repeat Simple_repeat 1 34 0 2 817 880 282 76 57 chr6 30502720 30503089 -119013948 - MTEa LTR MaLR -3 376 1 3 817 190 338 0 75 chr6 30503105 30503185 -119013852 + L2b LINE L2 3302 3375 0 4 817 541 187 0 11 chr6 30503991 30504083 -119012954 - B1_Mus2 SINE Alu -29 118 28 5 817 366 268 34 43 chr6 30504006 30504123 -119012914 - MT2B LTR ERVL -343 258 143 6 817 222 118 0 0 chr6 30504551 30504585 -119012452 + (T)n Simple_repeat Simple_repeat 1 34 0 7 817 430 207 0 134 chr6 30504586 30504720 -119012317 - PB1D10 SINE Alu 0 117 2 8 817 24 53 0 0 chr6 30505340 30505378 -119011659 + AT_rich Low_complexity Low_complexity 1 38 0 9 817 1201 54 0 13 chr6 30505424 30505573 -119011464 + B1_Mm SINE Alu 1 147 0 1 817 307 266 0 0 chr6 30506043 30506122 -119010915 + C-rich Low_complexity Low_complexity 1 79 0 1 817 631 336 38 4 chr6 30506155 30506391 -119010646 - L3 LINE CR1 -524 3965 3722 1 817 256 48 0 45 chr6 30506630 30506674 -119010363 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 1 817 826 153 34 14 chr6 30506675 30506821 -119010216 - B1_Mur4 SINE Alu 0 150 2 1 817 384 22 0 0 chr6 30506838 30506883 -119010154 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1 817 305 114 0 0 chr6 30506883 30506927 -119010110 - B3 SINE B2 -12 204 161 1 817 446 175 9 142 chr6 30506908 30507021 -119010016 - B2_Mm2 SINE B2 -95 100 3 1 817 1297 121 10 10 chr6 30507047 30507239 -119009798 - B2_Mm2 SINE B2 -2 193 2 1 817 448 288 76 0 chr6 30507268 30507386 -119009651 - RSINE1 SINE B4 -35 130 4 1 817 861 99 22 22 chr6 30507989 30508123 -119008914 + B1_Mur3 SINE Alu 16 149 0 2 817 358 177 16 16 chr6 30508277 30508340 -119008697 + ID4_ SINE ID 1 63 -20 2 817 495 123 0 0 chr6 30508795 30508876 -119008161 + (TG)n Simple_repeat Simple_repeat 1 81 0 2 817 566 229 8 24 chr6 30508876 30509001 -119008036 - RSINE1 SINE B4 -40 125 3 2 817 402 21 0 0 chr6 30509696 30509743 -119007294 + (TTTTA)n Simple_repeat Simple_repeat 3 49 0 2 817 835 142 14 29 chr6 30509745 30509883 -119007154 - B1_Mur3 SINE Alu -13 136 1 2 817 442 246 91 0 chr6 30510497 30510607 -119006430 - PB1D9 SINE Alu 0 120 1 2 817 313 262 37 46 chr6 30510511 30510619 -119006418 - B4 SINE B4 -115 177 71 2 817 198 0 0 0 chr6 30510762 30510784 -119006253 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2 817 918 286 24 0 chr6 30511275 30511488 -119005549 - ID_B1 SINE B4 0 224 7 2 817 192 77 0 0 chr6 30511689 30511715 -119005322 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 3 817 483 130 0 0 chr6 30511783 30511860 -119005177 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 817 1021 189 68 10 chr6 30511860 30512052 -119004985 - B3 SINE B2 -13 203 1 3 817 244 331 61 9 chr6 30512500 30512619 -119004418 + MIRb SINE MIR 20 138 -124 3 817 244 269 77 0 chr6 30512700 30512752 -119004285 - ID4_ SINE ID 0 83 28 3 817 269 256 21 32 chr6 30513476 30513569 -119003468 + MER46C DNA MER2_type 236 327 -11 3 817 980 193 13 78 chr6 30514851 30515081 -119001956 + B3 SINE B2 2 216 0 3 817 379 276 45 17 chr6 30515173 30515193 -119001844 - B4A SINE B4 -111 181 125 3 817 534 167 0 0 chr6 30515193 30515271 -119001766 - B1_Mur3 SINE Alu -70 79 2 3 817 379 276 45 17 chr6 30515271 30515290 -119001747 - B4A SINE B4 -111 124 63 3 817 345 82 0 0 chr6 30515290 30515339 -119001698 + (TCC)n Simple_repeat Simple_repeat 1 49 0 3 817 886 146 7 14 chr6 30515339 30515478 -119001559 - B1_Mus1 SINE Alu -9 139 2 4 817 704 267 99 55 chr6 30515483 30515776 -119001261 - L1MB4 LINE L1 -43 6137 5832 4 817 210 71 0 0 chr6 30515784 30515812 -119001225 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 817 272 143 0 18 chr6 30516108 30516165 -119000872 + (ATTG)n Simple_repeat Simple_repeat 1 56 0 4 817 1074 69 0 0 chr6 30516449 30516593 -119000444 + (TCTA)n Simple_repeat Simple_repeat 4 147 0 4 817 691 287 137 4 chr6 30516672 30516934 -119000103 + MER31B LTR ERV1 153 449 -17 4 817 640 162 111 0 chr6 30517033 30517150 -118999887 + B1_Mur2 SINE Alu 10 139 -10 4 817 510 17 0 0 chr6 30517151 30517210 -118999827 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 4 817 1037 123 0 6 chr6 30517210 30517381 -118999656 + (GAAA)n Simple_repeat Simple_repeat 1 170 0 4 817 436 253 0 31 chr6 30517389 30517487 -118999550 + PB1D10 SINE Alu 22 116 -1 4 817 603 261 39 78 chr6 30517505 30517685 -118999352 + B3 SINE B2 33 205 -11 5 817 377 20 20 0 chr6 30518077 30518127 -118998910 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 817 422 323 116 66 chr6 30519056 30519298 -118997739 - MIRc SINE MIR -6 262 9 5 817 714 262 31 20 chr6 30521325 30521520 -118995517 - B3A SINE B2 0 198 2 5 817 407 261 44 22 chr6 30521520 30521610 -118995427 + B3A SINE B2 91 182 -16 5 817 971 267 218 0 chr6 30521885 30522188 -118994849 - MTE2a LTR MaLR -10 369 1 5 817 356 322 185 43 chr6 30523464 30523740 -118993297 - L1ME4a LINE L1 -4 6120 5806 5 817 314 313 97 32 chr6 30524681 30524866 -118992171 + MIR SINE MIR 39 235 -27 5 817 21 0 0 0 chr6 30525559 30525580 -118991457 + AT_rich Low_complexity Low_complexity 1 21 0 5 817 183 162 0 0 chr6 30526008 30526045 -118990992 + T-rich Low_complexity Low_complexity 1 37 0 5 817 697 312 56 24 chr6 30526940 30527153 -118989884 - MamSINE1 SINE tRNA -69 221 2 6 817 569 14 14 0 chr6 30527518 30527588 -118989449 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 6 817 488 275 133 35 chr6 30527588 30527731 -118989306 - RSINE1 SINE B4 -5 160 4 6 817 577 160 17 8 chr6 30527746 30527866 -118989171 + CT-rich Low_complexity Low_complexity 1 121 0 6 817 384 221 266 0 chr6 30527871 30527984 -118989053 - B1_Mur2 SINE Alu -2 147 5 6 817 211 271 0 78 chr6 30527932 30527996 -118989041 - ID_B1 SINE B4 -87 137 79 6 817 803 257 18 18 chr6 30528105 30528323 -118988714 - ID_B1 SINE B4 -4 220 3 6 817 772 281 71 59 chr6 30528357 30528595 -118988442 - B4A SINE B4 -48 244 4 6 817 22 70 0 0 chr6 30528620 30528663 -118988374 + AT_rich Low_complexity Low_complexity 1 43 0 6 817 231 180 0 0 chr6 30528663 30528698 -118988339 + T-rich Low_complexity Low_complexity 16 50 0 6 817 782 203 28 0 chr6 30528698 30528841 -118988196 - B1_Mm SINE Alu 0 147 1 7 817 231 180 0 0 chr6 30528841 30528855 -118988182 + T-rich Low_complexity Low_complexity 2 15 0 7 817 838 118 0 0 chr6 30529038 30529165 -118987872 + B1_Mur4 SINE Alu 6 132 -18 7 817 358 304 9 9 chr6 30529422 30529535 -118987502 + PB1D10 SINE Alu 5 117 0 7 817 357 324 79 58 chr6 30531929 30532446 -118984591 - L1MC5 LINE L1 -71 7890 7363 7 817 287 232 0 12 chr6 30532648 30532731 -118984306 + T-rich Low_complexity Low_complexity 4 85 0 7 817 823 159 12 0 chr6 30532718 30532872 -118984165 + CT-rich Low_complexity Low_complexity 10 165 0 7 817 1241 47 0 0 chr6 30532872 30533020 -118984017 - B1_Mus1 SINE Alu 0 148 1 7 817 693 197 43 14 chr6 30533028 30533167 -118983870 - B1_Mur1 SINE Alu -6 143 1 7 817 1541 37 37 5 chr6 30533182 30533370 -118983667 + B2_Mm2 SINE B2 2 195 0 7 817 23 0 0 0 chr6 30534052 30534075 -118982962 + AT_rich Low_complexity Low_complexity 1 23 0 8 817 402 21 0 0 chr6 30534440 30534487 -118982550 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 817 220 287 95 75 chr6 30535332 30535479 -118981558 + MIRm SINE MIR 115 264 -12 8 817 306 171 0 0 chr6 30536304 30536374 -118980663 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 817 620 307 34 104 chr6 30536379 30536611 -118980426 - B4A SINE B4 -1 291 78 8 817 396 0 0 0 chr6 30536611 30536655 -118980382 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 817 620 307 34 104 chr6 30536655 30536691 -118980346 - B4A SINE B4 -215 77 42 8 817 234 296 227 50 chr6 30537716 30537954 -118979083 - Tigger15a DNA TcMar -77 638 359 8 817 317 384 19 33 chr6 30538249 30538462 -118978575 + L1MC4a LINE L1 5689 5898 -1984 8 817 909 145 0 16 chr6 30538469 30538651 -118978386 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 817 632 289 141 34 chr6 30538672 30538934 -118978103 + B4A SINE B4 3 292 0 8 817 241 195 0 0 chr6 30539167 30539208 -118977829 + T-rich Low_complexity Low_complexity 1 41 0 9 817 336 368 59 11 chr6 30539461 30539648 -118977389 + MIRb SINE MIR 56 251 -17 9 818 838 305 76 57 chr6 30539809 30540178 -118976859 - MLT1F LTR MaLR 0 548 173 9 818 629 297 25 25 chr6 30540328 30540528 -118976509 - B4A SINE B4 -90 202 3 9 818 322 204 28 38 chr6 30541391 30541503 -118975534 - PB1 SINE Alu -2 147 28 9 818 186 103 0 0 chr6 30541579 30541608 -118975429 + (TCC)n Simple_repeat Simple_repeat 2 30 0 9 818 741 203 30 8 chr6 30541623 30541757 -118975280 - B1_Mur2 SINE Alu -12 137 1 9 818 1176 314 69 46 chr6 30542552 30543119 -118973918 - MamRep605 Unknown Unknown -81 795 216 9 818 336 330 125 76 chr6 30543123 30543412 -118973625 + L1M5 LINE L1 5082 5384 -762 9 818 236 283 0 16 chr6 30543942 30544003 -118973034 + LTR16A1 LTR ERVL 50 109 -347 9 818 338 188 25 0 chr6 30544053 30544133 -118972904 + C-rich Low_complexity Low_complexity 5 86 0 1 818 584 142 189 0 chr6 30544138 30544244 -118972793 - RSINE1 SINE B4 -38 127 2 1 818 201 379 58 0 chr6 30544787 30544874 -118972163 - L2a LINE L2 -19 3407 3316 1 818 180 135 0 0 chr6 30545444 30545481 -118971556 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 818 309 135 0 19 chr6 30545481 30545534 -118971503 - HAL1-3A_ME LINE L1 -831 2027 1976 1 818 210 367 80 0 chr6 30545541 30545691 -118971346 - RSINE1 SINE B4 0 165 4 1 818 613 286 87 27 chr6 30545691 30545904 -118971133 - B4 SINE B4 -66 226 1 1 818 306 0 0 0 chr6 30545921 30545955 -118971082 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 818 219 232 69 18 chr6 30546193 30546302 -118970735 + MIRc SINE MIR 65 175 -33 1 818 253 349 19 9 chr6 30547151 30547258 -118969779 - MIRc SINE MIR -32 236 129 1 818 375 107 36 0 chr6 30547912 30547996 -118969041 + (CAAA)n Simple_repeat Simple_repeat 2 88 0 1 818 408 245 104 0 chr6 30548150 30548256 -118968781 - RSINE1 SINE B4 -37 128 12 1 818 225 151 0 0 chr6 30549066 30549119 -118967918 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 818 250 306 115 27 chr6 30549192 30549340 -118967697 - RSINE1 SINE B4 0 165 5 1 818 257 250 92 46 chr6 30549555 30549685 -118967352 + MER5A1 DNA MER1_type 31 166 0 1 818 832 279 139 14 chr6 30549941 30550180 -118966857 + LTR40a LTR ERVL 5 250 -269 1 818 836 314 57 37 chr6 30550197 30550482 -118966555 + L1MCa LINE L1 406 697 -5725 1 818 423 0 0 0 chr6 30550482 30550529 -118966508 + (TTTTG)n Simple_repeat Simple_repeat 5 51 0 1 818 836 314 57 37 chr6 30550529 30550680 -118966357 + L1MCa LINE L1 698 851 -5571 1 818 1157 150 78 20 chr6 30550709 30550913 -118966124 + B3 SINE B2 1 216 0 1 818 235 234 169 0 chr6 30550947 30551024 -118966013 + L1MA5 LINE L1 6171 6260 -40 1 818 328 289 137 27 chr6 30551104 30551250 -118965787 + L1MCa LINE L1 904 1065 -5357 1 818 780 237 41 19 chr6 30551314 30551534 -118965503 + L1MCa LINE L1 1222 1452 -4971 1 818 729 254 16 14 chr6 30551537 30551721 -118965316 + B3A SINE B2 1 186 -9 1 818 523 234 110 107 chr6 30551737 30551816 -118965221 + L1MCa LINE L1 1560 1633 -5495 1 818 301 254 15 0 chr6 30551816 30551883 -118965154 + ID4 SINE ID 5 72 -11 1 818 1306 262 98 34 chr6 30551883 30552630 -118964407 + L1MCa LINE L1 1634 2560 -4477 1 818 550 294 117 48 chr6 30552800 30553090 -118963947 + L1MCa LINE L1 3272 3581 -3360 1 818 314 318 18 36 chr6 30553211 30553322 -118963715 + LTR40a LTR ERVL 407 515 -4 1 818 989 253 50 35 chr6 30553409 30553692 -118963345 - B4A SINE B4 -5 287 1 1 818 409 272 166 28 chr6 30553750 30553946 -118963091 - B4 SINE B4 -51 241 18 1 818 921 170 0 0 chr6 30553946 30554087 -118962950 + B1_Mus1 SINE Alu 1 141 -7 1 818 409 271 39 47 chr6 30554087 30554099 -118962938 - B4 SINE B4 -275 17 6 1 818 33 0 0 0 chr6 30554099 30554132 -118962905 + AT_rich Low_complexity Low_complexity 1 33 0 1 818 235 301 50 43 chr6 30554941 30555080 -118961957 - Charlie7 DNA MER1_type -28 2584 2445 1 818 230 167 27 120 chr6 30556288 30556363 -118960674 - Tigger14a DNA MER2_type -154 170 103 1 818 291 54 0 0 chr6 30556486 30556523 -118960514 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 818 579 218 9 0 chr6 30556936 30557046 -118959991 - PB1D9 SINE Alu -8 112 2 1 818 467 304 24 107 chr6 30557070 30557199 -118959838 - L1M5 LINE L1 -559 5681 5567 1 818 239 300 0 14 chr6 30557199 30557270 -118959767 - ID4 SINE ID -11 72 3 1 818 467 304 24 107 chr6 30557270 30557438 -118959599 - L1M5 LINE L1 -674 5566 5410 1 818 272 256 0 25 chr6 30557514 30557594 -118959443 - L1M5 LINE L1 -854 5292 5215 1 818 1016 75 14 0 chr6 30557633 30557779 -118959258 + (TTTC)n Simple_repeat Simple_repeat 1 148 0 1 818 524 279 0 62 chr6 30557779 30557914 -118959123 - ID_B1 SINE B4 -17 207 82 1 818 311 330 8 17 chr6 30557951 30558068 -118958969 - PB1D10 SINE Alu 0 117 2 1 818 1093 67 15 0 chr6 30558192 30558326 -118958711 + B1_Mm SINE Alu 2 137 -10 1 818 183 42 0 0 chr6 30558326 30558350 -118958687 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 818 445 296 40 70 chr6 30558356 30558727 -118958310 - L1M5 LINE L1 -980 5166 4807 1 818 201 74 0 0 chr6 30559133 30559160 -118957877 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1 818 308 297 92 55 chr6 30559282 30559446 -118957591 - MER104 DNA Tc2 -3 178 9 1 818 371 366 70 38 chr6 30559456 30559792 -118957245 + L1MEd LINE L1 939 1323 -4902 1 818 259 323 66 31 chr6 30559810 30560069 -118956968 + L1MEd LINE L1 1334 1601 -4548 1 818 293 275 53 32 chr6 30560586 30560680 -118956357 + L2b LINE L2 3277 3372 -3 1 818 261 300 25 12 chr6 30560894 30560975 -118956062 - MER3 DNA MER1_type -127 82 1 1 818 261 235 0 14 chr6 30561006 30561075 -118955962 + CT-rich Low_complexity Low_complexity 2 69 0 1 818 202 204 0 0 chr6 30561469 30561513 -118955524 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 818 186 306 164 46 chr6 30561951 30562170 -118954867 - MIRc SINE MIR -3 265 21 1 818 342 111 0 69 chr6 30562767 30562825 -118954212 - HAL1-3A_ME LINE L1 -829 2029 1976 1 818 381 240 0 0 chr6 30562838 30563013 -118954024 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 818 471 35 0 0 chr6 30564992 30565049 -118951988 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 1 818 493 258 200 67 chr6 30565372 30565567 -118951470 + ID_B1 SINE B4 2 222 -2 1 818 552 277 43 0 chr6 30566227 30566368 -118950669 + B4A SINE B4 127 273 -19 1 818 297 0 0 0 chr6 30567775 30567808 -118949229 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 818 414 187 37 18 chr6 30568485 30568594 -118948443 - L1ME4a LINE L1 -2 6122 6012 1 818 362 288 171 29 chr6 30568614 30568854 -118948183 + L2a LINE L2 1725 1998 -1421 1 818 324 276 11 22 chr6 30569436 30569525 -118947512 + L2a LINE L2 2727 2814 -605 1 818 294 322 114 55 chr6 30569669 30569993 -118947044 + L2a LINE L2 2875 3217 -209 1 818 198 0 0 0 chr6 30571757 30571779 -118945258 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 1 818 219 302 32 0 chr6 30572046 30572109 -118944928 + MIRm SINE MIR 28 92 -184 1 818 191 267 89 57 chr6 30574011 30574134 -118942903 - L2c LINE L2 -58 3329 3203 1 818 469 239 64 0 chr6 30574194 30574303 -118942734 - PB1D10 SINE Alu -1 116 1 1 818 381 285 36 48 chr6 30575385 30575551 -118941486 + MER5A1 DNA MER1_type 1 164 -2 1 818 1198 66 10 0 chr6 30579038 30579342 -118937695 + (CA)n Simple_repeat Simple_repeat 1 307 0 1 818 216 67 0 0 chr6 30579921 30579951 -118937086 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1 818 676 241 35 21 chr6 30579951 30580095 -118936942 - B1_Mur1 SINE Alu -2 147 2 1 818 410 277 7 65 chr6 30579976 30580115 -118936922 - MT2B LTR ERVL -323 278 148 1 818 327 233 37 37 chr6 30580106 30580213 -118936824 - MLT1J1 LTR MaLR -271 173 67 1 818 351 0 0 0 chr6 30582149 30582188 -118934849 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 818 342 67 0 0 chr6 30582476 30582521 -118934516 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 818 563 78 39 0 chr6 30582521 30582624 -118934413 + (GA)n Simple_repeat Simple_repeat 1 107 0 1 818 359 298 26 78 chr6 30582814 30582967 -118934070 + MamGypLTR2c LTR Gypsy 889 1033 -35 1 818 616 208 0 9 chr6 30583072 30583179 -118933858 - B1F SINE Alu -5 144 39 1 818 293 309 47 23 chr6 30583473 30583602 -118933435 - MIRb SINE MIR -23 245 114 1 818 226 136 0 120 chr6 30583775 30583825 -118933212 - PB1D9 SINE Alu -37 83 40 1 818 450 0 0 0 chr6 30583873 30583923 -118933114 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 1 818 297 228 0 0 chr6 30584657 30584714 -118932323 + ID4 SINE ID 1 57 -26 1 818 723 217 321 45 chr6 30584839 30585129 -118931908 - ORR1D2 LTR MaLR 0 370 1 1 818 300 323 60 60 chr6 30585551 30585719 -118931318 - MLT1J LTR MaLR -344 168 1 1 818 187 31 30 30 chr6 30588226 30588259 -118928778 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1 818 239 315 0 27 chr6 30588260 30588335 -118928702 + B4 SINE B4 215 287 -5 1 818 482 322 22 87 chr6 30591967 30592198 -118924839 - MER20 DNA MER1_type -2 217 2 1 818 240 312 85 47 chr6 30594113 30594348 -118922689 - L2a LINE L2 -179 3247 3004 1 818 239 281 167 11 chr6 30596421 30596511 -118920526 + PB1D10 SINE Alu 1 104 -13 1 818 378 0 0 0 chr6 30596511 30596553 -118920484 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 1 818 218 105 26 0 chr6 30596886 30596924 -118920113 + (GGA)n Simple_repeat Simple_repeat 1 39 0 1 818 600 227 8 15 chr6 30596930 30597060 -118919977 - B1_Mur1 SINE Alu -13 136 8 1 818 441 0 0 0 chr6 30597178 30597227 -118919810 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 818 324 0 0 0 chr6 30597227 30597262 -118919775 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 818 574 227 290 23 chr6 30597267 30597443 -118919594 + ID_B1 SINE B4 2 224 0 1 818 180 0 0 0 chr6 30597459 30597479 -118919558 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 1 818 915 115 13 6 chr6 30597480 30597638 -118919399 + (GAGAA)n Simple_repeat Simple_repeat 5 163 0 1 818 187 320 40 0 chr6 30597650 30597700 -118919337 + MIRm SINE MIR 162 213 -63 1 818 376 310 170 44 chr6 30597986 30598303 -118918734 + L1MC LINE L1 5305 5661 -2221 1 818 293 271 57 15 chr6 30598451 30598583 -118918454 + L1MB8 LINE L1 6045 6184 0 1 818 194 259 0 8 chr6 30598694 30598811 -118918226 + (CA)n Simple_repeat Simple_repeat 2 117 0 1 818 582 233 8 0 chr6 30598861 30599120 -118917917 + (CA)n Simple_repeat Simple_repeat 1 260 0 1 818 727 201 146 132 chr6 30601693 30601889 -118915148 - B4A SINE B4 -1 291 94 1 818 1245 41 0 0 chr6 30601889 30602035 -118915002 - B1_Mus2 SINE Alu 0 147 2 1 818 727 201 146 132 chr6 30602035 30602125 -118914912 - B4A SINE B4 -199 93 1 1 818 251 274 0 14 chr6 30602942 30603016 -118914021 + CT-rich Low_complexity Low_complexity 4 76 0 1 818 556 196 10 10 chr6 30606946 30607049 -118909988 + PB1D10 SINE Alu 15 117 0 1 818 686 221 0 6 chr6 30610118 30610286 -118906751 + GA-rich Low_complexity Low_complexity 3 169 0 1 818 772 272 0 0 chr6 30611041 30611203 -118905834 + RSINE1 SINE B4 3 164 -1 1 818 265 261 29 14 chr6 30611432 30611502 -118905535 - BC1_Mm scRNA scRNA -80 72 2 1 818 906 314 89 65 chr6 30611516 30611729 -118905308 + Charlie1 DNA MER1_type 1441 1656 -1125 1 818 647 262 0 7 chr6 30611729 30611875 -118905162 + B1F SINE Alu 5 149 0 1 818 704 324 90 52 chr6 30611875 30612218 -118904819 + Charlie1 DNA MER1_type 1657 2018 -763 1 818 195 277 0 0 chr6 30612466 30612531 -118904506 + GA-rich Low_complexity Low_complexity 3 67 0 2 818 963 239 51 131 chr6 30612569 30612910 -118904127 + Charlie1 DNA MER1_type 2292 2612 -169 1 818 369 0 0 0 chr6 30612910 30612951 -118904086 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 818 963 239 51 131 chr6 30612951 30613135 -118903902 + Charlie1 DNA MER1_type 2613 2775 -6 1 818 216 0 0 0 chr6 30616617 30616641 -118900396 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 2 818 251 250 31 0 chr6 30617685 30617749 -118899288 + L4 LINE RTE 1957 2022 -7 2 818 232 259 70 12 chr6 30617732 30617818 -118899219 - MIRc SINE MIR -101 167 77 2 818 377 202 44 44 chr6 30617932 30618046 -118898991 + L1MB2 LINE L1 6055 6168 -3 2 818 534 195 35 9 chr6 30618163 30618277 -118898760 + PB1D10 SINE Alu 1 117 0 2 818 22 35 0 0 chr6 30620412 30620441 -118896596 + AT_rich Low_complexity Low_complexity 1 29 0 2 818 23 0 0 0 chr6 30620551 30620574 -118896463 + AT_rich Low_complexity Low_complexity 1 23 0 2 818 396 0 0 0 chr6 30621507 30621551 -118895486 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 818 223 319 14 0 chr6 30623259 30623331 -118893706 - ID4_ SINE ID -9 74 2 2 818 317 315 0 0 chr6 30623542 30623615 -118893422 - ID4 SINE ID -3 80 8 2 818 293 200 92 13 chr6 30626347 30626423 -118890614 + L1MDa LINE L1 14 95 -6538 2 818 1101 263 77 6 chr6 30626418 30627005 -118890032 + L1MDa LINE L1 5591 6265 -304 2 818 1463 284 136 14 chr6 30627057 30627750 -118889287 + L1MD LINE L1 4537 5313 -833 2 818 281 83 0 0 chr6 30627947 30627983 -118889054 + L1MD1 LINE L1 5561 5596 -646 2 818 424 255 0 0 chr6 30627985 30628087 -118888950 + ID_B1 SINE B4 122 223 -1 2 818 370 267 71 155 chr6 30628119 30628429 -118888608 + L1MD1 LINE L1 5609 5892 -350 2 818 231 279 29 0 chr6 30628430 30628498 -118888539 + ID4 SINE ID 3 72 -11 2 818 458 216 21 0 chr6 30628757 30628854 -118888183 + L1MD1 LINE L1 6144 6242 0 2 818 21 0 0 0 chr6 30628931 30628952 -118888085 + AT_rich Low_complexity Low_complexity 1 21 0 2 818 25 31 0 0 chr6 30629094 30629126 -118887911 + AT_rich Low_complexity Low_complexity 1 32 0 2 818 535 254 56 28 chr6 30631450 30631592 -118885445 + RSINE1 SINE B4 20 165 0 2 818 243 228 51 61 chr6 30631602 30631700 -118885337 - Charlie18a DNA MER1_type -35 307 211 2 818 277 228 0 0 chr6 30631775 30631832 -118885205 - BC1_Mm scRNA scRNA -60 92 36 2 818 249 169 0 0 chr6 30631876 30631935 -118885102 + A-rich Low_complexity Low_complexity 1 59 0 2 818 453 19 0 0 chr6 30632302 30632356 -118884681 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 818 297 0 0 0 chr6 30632356 30632388 -118884649 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 818 395 261 18 9 chr6 30633507 30633619 -118883418 + MER20 DNA MER1_type 32 144 -75 2 818 182 326 42 77 chr6 30633675 30633786 -118883251 - L2 LINE L2 -555 2864 2754 2 818 3127 44 3 5 chr6 30633786 30634173 -118882864 + L1Md_F2 LINE L1 6197 6582 0 2 818 182 326 42 77 chr6 30634173 30634204 -118882833 - L2 LINE L2 -666 2753 2727 2 818 219 175 0 0 chr6 30634257 30634297 -118882740 + ID4_ SINE ID 1 40 -43 2 818 238 316 165 12 chr6 30634432 30634602 -118882435 - L2 LINE L2 -966 2453 2258 2 818 339 266 21 21 chr6 30635410 30635506 -118881531 + PB1D10 SINE Alu 1 96 -21 2 818 335 279 65 24 chr6 30636757 30636883 -118880154 + MLT1G3 LTR MaLR 205 335 -244 2 818 201 268 0 0 chr6 30637648 30637689 -118879348 + (ATGGTG)n Simple_repeat Simple_repeat 2 42 0 2 818 564 301 81 112 chr6 30638308 30638566 -118878471 + B4A SINE B4 19 268 -24 2 818 893 143 29 0 chr6 30638644 30638784 -118878253 - B1_Mur2 SINE Alu -5 144 1 2 818 340 264 40 32 chr6 30638819 30638944 -118878093 + MLT1A LTR MaLR 151 276 -98 2 818 308 190 30 114 chr6 30639384 30639515 -118877522 + PB1D7 SINE Alu 1 120 0 2 818 389 252 10 0 chr6 30639526 30639625 -118877412 + L1MD1 LINE L1 5341 5440 -919 2 818 382 232 252 0 chr6 30639625 30639724 -118877313 + RSINE1 SINE B4 3 126 -39 2 818 1204 289 59 78 chr6 30639784 30640374 -118876663 + L1MD1 LINE L1 5484 6062 -180 2 818 236 258 53 21 chr6 30640449 30640544 -118876493 + L1MD1 LINE L1 7891 7965 -30 2 818 684 258 113 84 chr6 30640607 30640891 -118876146 + B4 SINE B4 1 292 0 2 818 464 297 6 6 chr6 30640902 30641058 -118875979 + (CA)n Simple_repeat Simple_repeat 1 156 0 2 818 258 78 294 0 chr6 30641125 30641176 -118875861 - B1_Mus2 SINE Alu -6 141 76 2 818 588 282 174 39 chr6 30641223 30641739 -118875298 + HAL1 LINE L1 1146 1731 -776 2 818 633 261 68 53 chr6 30642213 30642519 -118874518 - L1MA7 LINE L1 -63 6228 5902 2 818 780 167 14 14 chr6 30642543 30642683 -118874354 + B1_Mur2 SINE Alu 9 148 -1 2 818 243 208 87 30 chr6 30643272 30643406 -118873631 + L2c LINE L2 3186 3375 -51 2 818 193 247 29 136 chr6 30644293 30644396 -118872641 - L2c LINE L2 -2 3385 3294 2 818 3515 174 65 95 chr6 30645052 30645969 -118871068 - RMER19B LTR ERVK -12 890 1 2 818 492 285 33 40 chr6 30646013 30646163 -118870874 + RSINE1 SINE B4 9 157 -8 2 818 329 360 130 20 chr6 30646979 30647524 -118869513 + L1ME4a LINE L1 5515 6119 -5 2 818 389 321 48 58 chr6 30648581 30648925 -118868112 - MLT1A1 LTR MaLR 0 408 7 2 818 1058 236 95 40 chr6 30649718 30650045 -118866992 + MLT2D LTR ERVL 1 345 -69 2 818 254 303 116 34 chr6 30650175 30650322 -118866715 + L1MCc LINE L1 351 509 -5914 2 818 237 176 0 0 chr6 30651164 30651238 -118865799 + A-rich Low_complexity Low_complexity 1 74 0 2 818 553 294 21 14 chr6 30651343 30651488 -118865549 + RSINE1 SINE B4 9 154 -11 2 818 23 0 0 0 chr6 30651760 30651783 -118865254 + AT_rich Low_complexity Low_complexity 1 23 0 2 818 357 24 0 0 chr6 30652143 30652185 -118864852 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 2 818 2558 63 0 6 chr6 30652281 30652616 -118864421 + Lx LINE L1 6317 6649 -5 2 818 22 35 0 0 chr6 30652616 30652645 -118864392 + AT_rich Low_complexity Low_complexity 1 29 0 2 818 28 0 0 0 chr6 30652717 30652745 -118864292 + AT_rich Low_complexity Low_complexity 1 28 0 2 818 414 270 91 57 chr6 30652935 30653260 -118863777 - MLT1A LTR MaLR -11 397 4 2 818 202 319 29 0 chr6 30653458 30653527 -118863510 + L2c LINE L2 3089 3159 -228 2 818 185 262 118 12 chr6 30653660 30653745 -118863292 + MIRm SINE MIR 183 276 0 2 818 837 219 26 0 chr6 30654222 30654414 -118862623 + MamRep605 Unknown Unknown 441 637 -239 2 818 1258 173 0 39 chr6 30654952 30655186 -118861851 + URR1B DNA MER1_type 1 225 0 2 818 374 228 28 73 chr6 30655446 30655555 -118861482 - B1F SINE Alu -19 130 27 2 818 632 288 27 19 chr6 30655800 30656022 -118861015 + B3A SINE B2 1 216 0 2 818 911 129 0 0 chr6 30656035 30656175 -118860862 + B1_Mur2 SINE Alu 9 148 -1 2 818 335 328 8 0 chr6 30656754 30656897 -118860140 - Lx7 LINE L1 -425 7271 7140 2 818 230 0 33 0 chr6 30656900 30656930 -118860107 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 818 553 226 72 57 chr6 30656957 30657220 -118859817 - L1M4 LINE L1 -986 5658 5392 2 818 2677 215 33 40 chr6 30657222 30657882 -118859155 - RMER1C Other Other 0 1342 619 2 818 640 189 53 0 chr6 30657905 30658037 -118859000 + B1_Mur3 SINE Alu 11 149 0 2 818 469 229 118 30 chr6 30658093 30658228 -118858809 + B1_Mus2 SINE Alu 1 147 0 2 818 772 226 60 0 chr6 30658406 30658605 -118858432 + B3 SINE B2 2 212 -4 2 818 789 163 0 0 chr6 30658608 30658786 -118858251 + (TA)n Simple_repeat Simple_repeat 1 178 0 2 818 404 125 28 0 chr6 30658906 30658978 -118858059 + (CATA)n Simple_repeat Simple_repeat 4 77 0 2 818 198 0 0 0 chr6 30658980 30659002 -118858035 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 818 1306 281 83 65 chr6 30659349 30659904 -118857133 - L1M4 LINE L1 -5975 567 3 2 818 543 250 0 124 chr6 30660184 30660353 -118856684 - RSINE1 SINE B4 -15 150 3 2 818 355 305 46 15 chr6 30660547 30660677 -118856360 + MER94 DNA AcHobo 1 134 0 2 818 1096 269 74 8 chr6 30661731 30662095 -118854942 - L1MEc LINE L1 -2264 4055 3668 2 818 402 233 91 8 chr6 30662360 30662481 -118854556 - L1MA6 LINE L1 -2 6298 6168 2 818 410 314 116 11 chr6 30662538 30662805 -118854232 - L1MC LINE L1 -552 5792 5498 2 818 313 317 135 40 chr6 30663132 30663480 -118853557 - L1MC LINE L1 -2723 3423 3043 2 818 629 249 89 42 chr6 30663550 30663764 -118853273 - ID_B1 SINE B4 0 224 1 2 818 337 244 35 0 chr6 30663769 30663855 -118853182 - L1MEc LINE L1 -3193 3126 3038 2 818 263 270 101 19 chr6 30664272 30664509 -118852528 - L1MEc LINE L1 -3321 2998 2738 2 818 852 292 109 76 chr6 30664733 30665192 -118851845 + MLT1E3 LTR MaLR 142 615 -9 2 818 250 244 85 0 chr6 30665204 30665286 -118851751 - L1MEc LINE L1 -3757 2562 2474 2 818 339 335 81 48 chr6 30665327 30665662 -118851375 - L1MEc LINE L1 -3984 2416 2071 2 818 255 336 105 0 chr6 30665728 30665871 -118851166 - RSINE1 SINE B4 -3 162 5 2 818 360 291 26 26 chr6 30666065 30666217 -118850820 - MTEa LTR MaLR -26 353 202 2 818 612 253 13 0 chr6 30666225 30666375 -118850662 + B3 SINE B2 2 153 -63 2 818 474 18 0 0 chr6 30666376 30666431 -118850606 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 818 356 302 43 7 chr6 30666434 30666574 -118850463 - MTEa LTR MaLR -214 145 1 2 818 227 276 83 33 chr6 30666624 30666744 -118850293 - L1MEc LINE L1 -4579 1821 1696 2 818 256 316 74 15 chr6 30666759 30666894 -118850143 - L1MC4a LINE L1 -14 7981 7839 2 818 235 333 33 0 chr6 30667288 30667408 -118849629 - L1MC4a LINE L1 -483 7512 7389 2 818 512 168 10 0 chr6 30667514 30667615 -118849422 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 2 818 291 310 127 28 chr6 30667615 30667867 -118849170 - L1MC4a LINE L1 -931 7064 6788 2 818 273 212 88 29 chr6 30667888 30667956 -118849081 - BC1_Mm scRNA scRNA -67 85 14 2 818 256 241 0 0 chr6 30668046 30668100 -118848937 - L1MC4a LINE L1 -1305 6690 6637 2 818 300 322 41 0 chr6 30668191 30668312 -118848725 - L1MC4a LINE L1 -1288 6594 6469 2 818 1325 93 13 40 chr6 30668585 30668809 -118848228 - L1_Mus3 LINE L1 -3 6635 6418 2 818 772 269 105 68 chr6 30668941 30669380 -118847657 + L1M5 LINE L1 3196 3650 -2496 2 818 599 293 6 18 chr6 30669497 30669664 -118847373 + RSINE1 SINE B4 1 165 0 2 819 532 180 35 26 chr6 30671899 30672013 -118845024 - B3A SINE B2 -80 118 4 2 819 459 0 0 0 chr6 30672677 30672728 -118844309 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 819 249 57 0 0 chr6 30673008 30673043 -118843994 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 819 21 0 0 0 chr6 30673102 30673123 -118843914 + AT_rich Low_complexity Low_complexity 1 21 0 2 819 349 346 123 48 chr6 30673800 30674052 -118842985 - Charlie16a DNA MER1_type -10 332 62 2 819 239 218 243 19 chr6 30674461 30674564 -118842473 + MLT1K LTR MaLR 195 320 -275 2 819 244 264 160 0 chr6 30674832 30674938 -118842099 - L1M5 LINE L1 -1043 5103 4981 3 819 318 349 89 40 chr6 30674946 30675170 -118841867 - L1MC LINE L1 -1141 5005 4771 3 819 24 0 0 0 chr6 30675236 30675260 -118841777 + AT_rich Low_complexity Low_complexity 1 24 0 3 819 237 272 58 94 chr6 30675301 30675358 -118841679 + YREP_Mm Unknown Unknown 124 277 -1535 3 819 631 203 56 16 chr6 30675358 30675483 -118841554 - B1F SINE Alu -1 148 19 3 819 1105 283 161 47 chr6 30675492 30676950 -118840087 - L1M5 LINE L1 -1475 4671 3042 3 819 276 307 92 9 chr6 30677599 30677826 -118839211 - L1M5 LINE L1 -3248 2898 2653 3 819 255 79 0 0 chr6 30677898 30677936 -118839101 + (T)n Simple_repeat Simple_repeat 1 38 0 3 819 1087 95 14 0 chr6 30677971 30678119 -118838918 + B1_Mur4 SINE Alu 1 150 0 3 819 277 179 179 0 chr6 30678198 30678265 -118838772 + PB1D9 SINE Alu 1 79 -41 3 819 2810 152 104 21 chr6 30678510 30679041 -118837996 - RMER15 LTR ERVL 0 575 1 3 819 357 43 0 0 chr6 30679265 30679312 -118837725 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3 819 237 345 106 65 chr6 30681616 30682031 -118835006 - L2c LINE L2 -40 3347 2916 3 819 256 222 134 12 chr6 30683597 30683679 -118833358 + MIRc SINE MIR 172 263 -5 3 819 216 97 0 0 chr6 30684027 30684058 -118832979 + (GGGAGA)n Simple_repeat Simple_repeat 5 35 0 3 819 201 39 0 0 chr6 30684264 30684290 -118832747 + (A)n Simple_repeat Simple_repeat 1 26 0 3 819 404 225 94 130 chr6 30684459 30684597 -118832440 - L3 LINE CR1 -257 4232 4100 3 819 456 19 0 0 chr6 30684758 30684811 -118832226 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 819 200 316 125 12 chr6 30686486 30686566 -118830471 + L2c LINE L2 3032 3120 -267 3 819 389 182 25 0 chr6 30690461 30690582 -118826455 + (GGGTG)n Simple_repeat Simple_repeat 2 125 0 3 819 344 278 25 12 chr6 30691186 30691286 -118825751 - MIRb SINE MIR -51 217 116 3 819 487 322 47 0 chr6 30693293 30693442 -118823595 + RSINE1 SINE B4 8 163 -2 3 819 862 143 48 35 chr6 30693481 30693626 -118823411 + B1_Mus2 SINE Alu 1 147 0 3 819 387 0 0 0 chr6 30693766 30693809 -118823228 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 819 184 308 290 0 chr6 30695540 30695647 -118821390 - MIRm SINE MIR -133 143 6 3 819 269 229 48 16 chr6 30695998 30696060 -118820977 + MER53 DNA hAT 1 64 -129 3 819 457 151 0 0 chr6 30697758 30697831 -118819206 + ID4_ SINE ID 1 73 -10 3 819 215 180 33 0 chr6 30701512 30701573 -118815464 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 3 819 198 0 0 0 chr6 30702448 30702470 -118814567 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 3 819 743 171 35 14 chr6 30753817 30753959 -118763078 + B1_Mur4 SINE Alu 6 150 0 3 819 319 221 0 0 chr6 30756559 30756627 -118760410 + PB1D10 SINE Alu 50 117 0 3 819 498 183 0 0 chr6 30756627 30756742 -118760295 + A-rich Low_complexity Low_complexity 1 115 0 3 819 218 366 48 19 chr6 30757138 30757241 -118759796 - MIRb SINE MIR -140 128 23 3 819 25 31 0 0 chr6 30761112 30761144 -118755893 + AT_rich Low_complexity Low_complexity 1 32 0 3 819 735 176 34 40 chr6 30761289 30761437 -118755600 + B1_Mur2 SINE Alu 2 148 -1 3 819 1043 174 105 0 chr6 30761816 30762006 -118755031 + URR1B DNA MER1_type 2 211 -14 3 819 427 65 32 0 chr6 30762241 30762303 -118754734 - B1_Mus2 SINE Alu 0 147 84 3 819 269 192 40 40 chr6 30762303 30762315 -118754722 - ID_B1 SINE B4 0 222 149 3 819 1189 61 0 0 chr6 30762516 30762663 -118754374 + B1_Mus2 SINE Alu 1 147 0 3 819 259 261 0 44 chr6 30763861 30763929 -118753108 + B1_Mm SINE Alu 32 96 -51 3 819 655 44 22 0 chr6 30764123 30764214 -118752823 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 3 819 284 222 76 114 chr6 30764318 30764450 -118752587 - L2c LINE L2 -1 3386 3260 3 819 742 246 13 173 chr6 30764790 30765016 -118752021 - B3A SINE B2 -1 215 2 3 819 233 29 29 0 chr6 30767321 30767355 -118749682 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 819 344 260 44 30 chr6 30767438 30767573 -118749464 + L1MC4a LINE L1 5258 5394 -2488 3 819 243 259 241 52 chr6 30767573 30767805 -118749232 + B4 SINE B4 3 278 -14 3 819 375 296 72 11 chr6 30767853 30768034 -118749003 + L1MC4a LINE L1 5347 5538 -2344 3 819 262 279 82 31 chr6 30768215 30768411 -118748626 + L1MC4a LINE L1 5793 5998 -1884 3 819 289 243 242 13 chr6 30768750 30768874 -118748163 - MIR SINE MIR -67 201 45 3 819 226 218 241 29 chr6 30768951 30769088 -118747949 - L1M5 LINE L1 -509 5664 5499 3 819 520 214 9 9 chr6 30769091 30769204 -118747833 + Lx8 LINE L1 6310 6422 -1051 3 819 383 179 0 60 chr6 30769663 30769746 -118747291 + Lx8 LINE L1 6576 6653 -820 3 819 1555 52 0 0 chr6 30769827 30770018 -118747019 - B2_Mm1a SINE B2 -2 191 1 3 819 883 335 67 14 chr6 30770019 30770440 -118746597 + Lx8 LINE L1 6841 7283 -190 3 819 5267 12 0 0 chr6 30771055 30771644 -118745393 + L1Md_A LINE L1 5994 6582 0 3 819 791 204 0 0 chr6 30772354 30772501 -118744536 + B1_Mus2 SINE Alu 1 147 0 3 819 33 0 0 0 chr6 30772501 30772534 -118744503 + AT_rich Low_complexity Low_complexity 1 33 0 3 819 289 258 80 70 chr6 30773483 30773583 -118743454 - PB1D10 SINE Alu -6 111 11 3 819 276 280 115 50 chr6 30773611 30773750 -118743287 + MER58C DNA MER1_type 66 213 -2 3 819 246 286 83 8 chr6 30774207 30774327 -118742710 + L1M5 LINE L1 5062 5190 -956 3 819 345 319 101 6 chr6 30775254 30775412 -118741625 + MER3 DNA MER1_type 32 204 -5 3 819 440 267 100 45 chr6 30776381 30776601 -118740436 + L1M4 LINE L1 233 464 -6282 3 819 660 208 0 35 chr6 30776719 30776893 -118740144 + L1M4 LINE L1 1265 1432 -5314 3 819 336 260 77 23 chr6 30777018 30777148 -118739889 + L1M4 LINE L1 1628 1764 -4982 3 819 600 213 24 24 chr6 30777821 30777989 -118739048 - Lx5 LINE L1 -3 7047 6880 3 819 406 245 222 39 chr6 30778038 30778191 -118738846 - B3A SINE B2 -17 181 1 3 819 447 271 85 16 chr6 30778431 30778667 -118738370 + B4A SINE B4 1 286 -6 3 819 254 333 83 22 chr6 30778951 30779552 -118737485 + L1M4 LINE L1 2047 2684 -4165 3 819 647 277 87 23 chr6 30779666 30780010 -118737027 + L1M4 LINE L1 2883 3248 -3594 3 819 635 123 121 17 chr6 30780029 30780145 -118736892 + B1_Mur2 SINE Alu 1 128 -21 3 819 415 252 125 7 chr6 30780189 30780333 -118736704 + L1M4 LINE L1 3299 3459 -3386 3 819 327 370 0 53 chr6 30780419 30780533 -118736504 + B3 SINE B2 85 192 -24 3 819 440 104 0 0 chr6 30780554 30780621 -118736416 - L1_Mur2 LINE L1 -2462 3415 3349 3 819 1309 115 9 0 chr6 30780617 30780835 -118736202 + Lx4B LINE L1 5238 5457 -420 3 819 364 193 44 22 chr6 30781278 30781368 -118735669 + RLTR23 LTR ERV1 339 430 0 3 819 4686 117 52 13 chr6 30781368 30782281 -118734756 + Lx4B LINE L1 5454 6403 -655 3 819 3690 164 48 0 chr6 30782281 30782926 -118734111 + RLTR25A LTR ERVK 3 678 -425 3 819 1118 128 65 25 chr6 30782926 30783126 -118733911 + Lx4B LINE L1 6832 7039 -19 3 819 387 0 0 0 chr6 30783188 30783231 -118733806 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 819 381 311 69 80 chr6 30783236 30783467 -118733570 + L1M4 LINE L1 3608 3832 -3013 3 819 1196 40 0 20 chr6 30783467 30783605 -118733432 + B1_Mus1 SINE Alu 1 137 -11 3 819 225 0 0 0 chr6 30783605 30783630 -118733407 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 819 1196 40 0 20 chr6 30783630 30783642 -118733395 + B1_Mus1 SINE Alu 138 148 0 3 819 381 311 69 80 chr6 30783642 30783672 -118733365 + L1M4 LINE L1 3833 3866 -2979 3 819 392 51 17 0 chr6 30783745 30783804 -118733233 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 3 819 981 71 0 0 chr6 30783806 30783932 -118733105 - B1_Mus2 SINE Alu -6 141 16 3 819 189 0 0 0 chr6 30783932 30783953 -118733084 + (CCA)n Simple_repeat Simple_repeat 1 21 0 3 819 480 235 41 41 chr6 30783961 30784156 -118732881 + L1M4 LINE L1 3902 4096 -2749 3 819 831 298 65 14 chr6 30784150 30784582 -118732455 + L1M4 LINE L1 5549 6002 -843 3 819 3088 93 26 13 chr6 30784770 30785229 -118731808 - L1_Mus4 LINE L1 0 6636 6172 3 819 270 335 42 42 chr6 30785278 30785443 -118731594 + L1MB7 LINE L1 4081 4245 -1901 3 819 379 284 60 52 chr6 30785654 30785788 -118731249 + RSINE1 SINE B4 2 136 -29 3 819 365 264 82 74 chr6 30785789 30786059 -118730978 + L1MB7 LINE L1 4404 4675 -1471 3 819 251 321 69 30 chr6 30786135 30786366 -118730671 + L1MB7 LINE L1 4844 5083 -1063 3 819 431 250 81 24 chr6 30786957 30787166 -118729871 + L1MB7 LINE L1 5544 5764 -414 3 819 365 316 122 19 chr6 30787235 30787448 -118729589 + L1MB7 LINE L1 5941 6175 -9 3 819 262 339 33 67 chr6 30787448 30787465 -118729572 + ID_B1 SINE B4 70 185 -39 3 819 371 311 39 0 chr6 30787465 30787568 -118729469 + B1F SINE Alu 1 107 -42 3 819 34 0 0 0 chr6 30787620 30787654 -118729383 + AT_rich Low_complexity Low_complexity 1 34 0 3 819 1084 125 0 18 chr6 30787758 30787921 -118729116 + B2_Mm2 SINE B2 2 161 -34 3 819 495 0 0 0 chr6 30787921 30787976 -118729061 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 3 819 1184 61 0 0 chr6 30787983 30788130 -118728907 + B1_Mus1 SINE Alu 2 148 0 3 819 421 288 66 81 chr6 30788209 30788345 -118728692 - RSINE1 SINE B4 -29 136 3 3 819 373 284 27 9 chr6 30788597 30788707 -118728330 - PB1D7 SINE Alu -8 112 1 3 819 468 79 92 0 chr6 30788852 30788928 -118728109 - MTD LTR MaLR -18 401 319 3 819 290 299 98 45 chr6 30788922 30789034 -118728003 + B4 SINE B4 167 284 -8 3 819 305 82 0 20 chr6 30789068 30789118 -118727919 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 819 24958 116 32 12 chr6 30790096 30791351 -118725686 + Lx LINE L1 419 1694 -4189 3 819 4521 45 5 2 chr6 30791351 30791902 -118725135 + L1_Mus1 LINE L1 6015 6567 0 3 819 24958 134 11 26 chr6 30791902 30796947 -118720090 + Lx LINE L1 1695 6654 0 3 819 668 329 87 68 chr6 30796955 30797473 -118719564 + L1M5 LINE L1 4758 5285 -861 3 819 457 316 40 59 chr6 30797643 30797845 -118719192 + MLT1A LTR MaLR 1 198 -176 3 819 272 244 54 115 chr6 30797967 30798012 -118719025 - Tigger5 DNA MER2_type -13 2393 2354 3 819 2428 87 17 14 chr6 30798012 30798373 -118718664 - Lx3_Mus LINE L1 0 7009 6648 3 819 272 244 54 115 chr6 30798373 30798457 -118718580 - Tigger5 DNA MER2_type -53 2353 2272 3 819 264 358 0 0 chr6 30798552 30798633 -118718404 - Tigger5 DNA MER2_type -2325 81 1 3 819 3072 56 8 8 chr6 30799256 30799652 -118717385 - MTA_Mm LTR MaLR 0 396 1 3 819 799 341 84 41 chr6 30799726 30800212 -118716825 + MLT1F LTR MaLR 42 548 0 3 819 228 138 52 0 chr6 30800352 30800410 -118716627 + T-rich Low_complexity Low_complexity 4 64 0 3 819 1213 47 0 7 chr6 30800410 30800559 -118716478 - B1_Mus1 SINE Alu 0 148 1 3 819 672 317 63 15 chr6 30801133 30801402 -118715635 + B4A SINE B4 1 282 -10 3 819 345 402 10 77 chr6 30801488 30801682 -118715355 + B4A SINE B4 8 188 -104 3 102 523 298 223 21 chr6 30801845 30802078 -118714959 + MLT1F LTR MaLR 138 417 -131 3 820 319 338 93 20 chr6 30802068 30802219 -118714818 + ID_B1 SINE B4 63 224 0 3 820 22 56 0 0 chr6 30802307 30802343 -118714694 + AT_rich Low_complexity Low_complexity 1 36 0 3 820 316 346 13 0 chr6 30802458 30802536 -118714501 - ID4_ SINE ID 0 83 5 4 820 458 273 0 52 chr6 30802594 30802710 -118714327 + PB1D7 SINE Alu 1 110 -10 4 820 248 258 0 0 chr6 30803547 30803609 -118713428 + T-rich Low_complexity Low_complexity 1 62 0 4 820 997 134 0 0 chr6 30803609 30803758 -118713279 - B1_Mur4 SINE Alu 0 150 2 4 820 225 164 30 76 chr6 30803758 30803785 -118713252 + T-rich Low_complexity Low_complexity 3 26 0 4 820 645 255 0 7 chr6 30803821 30803959 -118713078 - B1F SINE Alu -8 141 5 4 820 493 325 83 30 chr6 30804029 30804376 -118712661 - MT2A LTR ERVL 0 601 163 4 820 1028 249 118 47 chr6 30804358 30804721 -118712316 - MTEa-int LTR MaLR -1126 454 66 4 820 579 227 61 0 chr6 30804724 30804856 -118712181 + B1_Mm SINE Alu 6 145 -2 4 820 256 268 35 35 chr6 30804842 30804927 -118712110 - MTEa-int LTR MaLR -1495 85 1 4 820 937 240 164 61 chr6 30804929 30805271 -118711766 - MTEa LTR MaLR -2 377 1 4 820 303 222 114 43 chr6 30805438 30805622 -118711415 - L1MEg LINE L1 -5012 1072 876 4 820 1186 224 150 10 chr6 30805669 30806042 -118710995 + RMER15-int LTR ERVL 4474 4903 -96 4 820 1872 148 122 8 chr6 30806042 30806396 -118710641 + ORR1B1 LTR MaLR 1 394 0 4 820 663 209 44 32 chr6 30806396 30806468 -118710569 + RMER15-int LTR ERVL 4904 4972 -27 4 820 2752 169 47 54 chr6 30806469 30807021 -118710016 + RMER15 LTR ERVL 1 548 -27 4 820 190 279 68 0 chr6 30807239 30807312 -118709725 - MIRm SINE MIR -76 192 109 4 820 318 177 304 0 chr6 30807959 30808038 -118708999 + PB1D10 SINE Alu 2 104 -13 4 820 967 131 21 0 chr6 30808455 30808600 -118708437 - B1_Mur3 SINE Alu -1 148 1 4 820 218 288 102 0 chr6 30809187 30809246 -118707791 - B1F2 SINE Alu -75 74 10 4 820 234 0 0 0 chr6 30810421 30810447 -118706590 + (TGG)n Simple_repeat Simple_repeat 1 26 0 4 820 913 221 73 10 chr6 30810499 30810705 -118706332 - B4 SINE B4 -63 229 11 4 820 1203 89 77 16 chr6 30810768 30810951 -118706086 + B2_Mm2 SINE B2 1 194 -1 4 820 387 41 0 0 chr6 30811622 30811671 -118705366 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 820 1352 107 0 0 chr6 30811749 30811945 -118705092 + ETnERV3-int LTR ERVK 5585 5780 -28 4 820 8223 25 0 1 chr6 30811959 30812889 -118704148 + RLTR13B3 LTR ERVK 1 929 0 4 820 608 222 0 49 chr6 30813304 30813427 -118703610 + PB1D10 SINE Alu 1 117 0 4 820 198 167 0 0 chr6 30813896 30813932 -118703105 + (ATGGTG)n Simple_repeat Simple_repeat 1 36 0 4 820 4432 10 2 0 chr6 30813960 30814452 -118702585 + MT2_Mm LTR ERVL 1 493 0 4 820 402 306 56 0 chr6 30815468 30815576 -118701461 + RSINE1 SINE B4 50 163 -2 4 820 23 0 0 0 chr6 30815619 30815642 -118701395 + AT_rich Low_complexity Low_complexity 1 23 0 4 820 486 214 122 38 chr6 30815834 30815965 -118701072 + B1_Mm SINE Alu 5 146 -1 4 820 394 291 155 65 chr6 30815983 30816091 -118700946 - L1M5 LINE L1 -2657 3489 3370 4 820 830 97 0 7 chr6 30816091 30816226 -118700811 - Lx4A LINE L1 -1 7057 6924 4 820 394 291 155 65 chr6 30816226 30816517 -118700520 - L1M5 LINE L1 -2777 3369 3054 4 820 1600 32 5 0 chr6 30817441 30817631 -118699406 - B2_Mm1a SINE B2 -2 191 1 4 820 455 221 48 9 chr6 30817740 30817845 -118699192 - PB1D10 SINE Alu -8 109 1 4 820 277 289 94 72 chr6 30817957 30818095 -118698942 + MER3 DNA MER1_type 1 141 -68 4 820 314 309 77 31 chr6 30818368 30818692 -118698345 - HAL1b LINE L1 -574 1435 1097 4 820 328 304 76 51 chr6 30818800 30818918 -118698119 - B1F SINE Alu -23 126 6 4 820 237 379 32 0 chr6 30819198 30819293 -118697744 - L2a LINE L2 -25 3401 3304 4 820 244 346 30 23 chr6 30819295 30819428 -118697609 - MER58A DNA MER1_type -25 199 66 4 820 350 307 72 89 chr6 30819477 30819638 -118697399 + MLT-int LTR MaLR 1443 1598 -137 4 820 1323 103 0 35 chr6 30819638 30819839 -118697198 - B2_Mm2 SINE B2 0 195 2 4 820 350 307 72 89 chr6 30819839 30819970 -118697067 + MLT-int LTR MaLR 1599 1730 -5 4 820 254 250 73 0 chr6 30819998 30820066 -118696971 + MLT1D LTR MaLR 26 98 -407 4 820 2894 61 3 3 chr6 30820126 30820502 -118696535 - L1_Mus1 LINE L1 0 6567 6192 4 820 357 158 12 35 chr6 30820553 30820638 -118696399 + L1Md_A LINE L1 6500 6582 0 4 820 2702 28 65 0 chr6 30820779 30821104 -118695933 + ORR1A1 LTR MaLR 1 346 0 4 820 371 307 56 21 chr6 30821119 30821262 -118695775 + MLT1D LTR MaLR 262 409 -96 4 820 448 300 126 25 chr6 30821337 30821587 -118695450 - B4 SINE B4 -15 277 28 4 820 239 250 0 0 chr6 30821644 30821696 -118695341 + MLT1D LTR MaLR 445 496 -9 4 820 454 333 61 10 chr6 30821711 30821908 -118695129 - MER58A DNA MER1_type -17 207 1 4 820 253 273 60 193 chr6 30822074 30822292 -118694745 + ORR1E LTR MaLR 4 192 -167 4 820 624 332 78 30 chr6 30823477 30823772 -118693265 - MLT1A0 LTR MaLR -1 364 56 4 820 1077 127 99 33 chr6 30823819 30824031 -118693006 - URR1A DNA MER1_type 0 226 1 4 820 324 274 159 33 chr6 30824273 30824424 -118692613 - L1MEc LINE L1 -4534 1866 1697 4 820 908 233 62 5 chr6 30824535 30824746 -118692291 + RCHARR1 DNA MER1_type 147 369 -605 4 820 663 293 159 16 chr6 30824771 30825344 -118691693 - L1M3 LINE L1 -817 5323 4669 4 820 2023 150 67 0 chr6 30825344 30825685 -118691352 - ORR1C2 LTR MaLR 0 384 21 4 820 297 301 34 0 chr6 30826048 30826194 -118690843 - L1MEc LINE L1 -6033 382 232 4 820 1041 314 46 62 chr6 30827361 30827734 -118689303 - MTEa LTR MaLR -11 368 2 4 820 765 318 88 54 chr6 30827940 30828144 -118688893 - L1ME2 LINE L1 -47 6117 5896 4 820 225 0 0 0 chr6 30828144 30828169 -118688868 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 820 765 310 113 46 chr6 30828169 30828717 -118688320 - L1ME2 LINE L1 -269 5895 5324 4 820 338 256 57 35 chr6 30828761 30828930 -118688107 - MLT1D LTR MaLR -2 678 380 4 820 520 266 75 166 chr6 30828914 30829234 -118687803 - MLT1D-int LTR MaLR -28 1343 1053 4 820 827 262 81 180 chr6 30829234 30829606 -118687431 + MTE2a LTR MaLR 1 335 -44 4 820 610 177 123 0 chr6 30829575 30829705 -118687332 + MTE2a LTR MaLR 232 377 -2 4 820 991 335 68 96 chr6 30829743 30830487 -118686550 - MLT1D-int LTR MaLR -405 1084 380 4 820 5137 22 0 2 chr6 30830487 30831072 -118685965 - L1Md_F2 LINE L1 -11 6571 5988 4 820 991 265 94 36 chr6 30831072 30831421 -118685616 - MLT1D-int LTR MaLR -875 496 127 4 820 1159 131 136 0 chr6 30831421 30831619 -118685418 - URR1B DNA MER1_type 0 225 1 4 820 991 265 94 36 chr6 30831619 30831648 -118685389 - MLT1D-int LTR MaLR -1245 126 97 4 820 368 300 41 70 chr6 30831709 30831881 -118685156 - MLT1D LTR MaLR 0 505 339 4 820 979 270 19 43 chr6 30832234 30832612 -118684425 + ORR1E LTR MaLR 3 370 0 4 820 360 0 0 0 chr6 30832885 30832925 -118684112 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 820 816 206 0 27 chr6 30832932 30833082 -118683955 - B3 SINE B2 -69 147 2 4 820 360 247 12 0 chr6 30833159 30833244 -118683793 - MLT1D LTR MaLR -419 86 1 4 820 24 67 0 0 chr6 30833980 30834025 -118683012 + AT_rich Low_complexity Low_complexity 1 45 0 4 820 22 0 0 0 chr6 30834708 30834730 -118682307 + AT_rich Low_complexity Low_complexity 1 22 0 4 820 830 207 0 27 chr6 30834753 30834902 -118682135 + B1_Mur3 SINE Alu 2 146 -3 4 820 787 257 5 54 chr6 30834918 30835140 -118681897 - B3 SINE B2 -5 211 1 4 820 756 48 10 0 chr6 30835163 30835267 -118681770 - B1_Mus2 SINE Alu 0 147 43 4 820 252 179 116 29 chr6 30835205 30835274 -118681763 - RLTR25B LTR ERVK -519 509 435 4 820 1075 175 380 4 chr6 30836541 30836807 -118680230 + ORR1B2 LTR MaLR 1 366 -1 4 820 432 55 0 0 chr6 30837290 30837345 -118679692 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 820 736 281 30 15 chr6 30838166 30838368 -118678669 - ID_B1 SINE B4 -18 206 2 4 820 271 213 133 66 chr6 30838391 30838587 -118678450 + L1M5 LINE L1 3158 3366 -2780 4 820 597 28 0 0 chr6 30838598 30838669 -118678368 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 820 348 273 143 8 chr6 30838689 30838822 -118678215 + L2 LINE L2 394 544 -2875 4 820 296 152 14 43 chr6 30839179 30839248 -118677789 + MLT2E LTR ERVL 485 551 -12 4 820 545 281 25 6 chr6 30839485 30839646 -118677391 + RSINE1 SINE B4 2 165 0 4 820 414 255 66 0 chr6 30839855 30839961 -118677076 + ERVL-E-int LTR ERVL 532 644 -5023 4 820 538 305 102 23 chr6 30840109 30840374 -118676663 + MLT2E LTR ERVL 42 327 -301 4 820 2635 126 20 0 chr6 30841620 30842025 -118675012 + Lx4A LINE L1 6195 6607 -451 4 820 183 156 0 0 chr6 30842087 30842119 -118674918 + T-rich Low_complexity Low_complexity 1 32 0 4 820 882 102 139 6 chr6 30842119 30842277 -118674760 - Lx LINE L1 0 6654 6476 4 820 3124 109 4 27 chr6 30842302 30842781 -118674256 + Lx4A LINE L1 6591 7058 0 4 820 28 0 0 0 chr6 30842781 30842809 -118674228 + AT_rich Low_complexity Low_complexity 1 28 0 4 820 367 250 19 68 chr6 30843535 30843638 -118673399 + RSINE1 SINE B4 11 108 -57 4 820 243 206 0 29 chr6 30843734 30843804 -118673233 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 4 820 210 294 88 0 chr6 30843932 30844000 -118673037 + L2a LINE L2 3333 3406 -20 4 820 189 298 112 14 chr6 30844039 30844182 -118672855 - MIRb SINE MIR -34 234 78 4 820 910 176 50 30 chr6 30844335 30844534 -118672503 + B3 SINE B2 14 216 0 4 820 33 43 0 0 chr6 30846436 30846483 -118670554 + GC_rich Low_complexity Low_complexity 1 47 0 4 820 21 57 0 0 chr6 30846510 30846545 -118670492 + GC_rich Low_complexity Low_complexity 1 35 0 4 820 192 77 0 0 chr6 30847525 30847551 -118669486 + (T)n Simple_repeat Simple_repeat 1 26 0 4 820 537 16 0 0 chr6 30847750 30847812 -118669225 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 820 306 0 0 0 chr6 30847812 30847845 -118669192 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 820 756 138 129 15 chr6 30848132 30848264 -118668773 + B1_Mm SINE Alu 1 147 0 4 820 1097 187 39 15 chr6 30848375 30848581 -118668456 + B3 SINE B2 1 211 -5 4 820 530 200 11 0 chr6 30849476 30849571 -118667466 - B1_Mur2 SINE Alu -53 96 1 4 820 695 256 81 74 chr6 30850368 30850651 -118666386 - B4A SINE B4 -4 288 4 4 820 847 136 71 28 chr6 30850753 30850935 -118666102 + B2_Mm2 SINE B2 2 191 -4 4 820 615 179 86 0 chr6 30851124 30851241 -118665796 + B1_Mus1 SINE Alu 1 127 -21 4 820 248 296 0 17 chr6 30851385 30851453 -118665584 + A-rich Low_complexity Low_complexity 1 68 0 4 820 931 150 7 7 chr6 30851453 30851601 -118665436 + B1_Mur3 SINE Alu 1 148 -1 4 820 248 296 0 17 chr6 30851601 30851649 -118665388 + A-rich Low_complexity Low_complexity 69 115 0 4 820 237 132 0 0 chr6 30851652 30851690 -118665347 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 5 820 1172 237 35 25 chr6 30851695 30851805 -118665232 - Lx7 LINE L1 -365 7331 7216 5 820 210 37 0 0 chr6 30851805 30851832 -118665205 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 820 1172 237 35 25 chr6 30851832 30852007 -118665030 - Lx7 LINE L1 -481 7215 7044 5 820 204 125 0 0 chr6 30853018 30853050 -118663987 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 5 820 536 53 27 0 chr6 30853402 30853477 -118663560 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 5 820 232 250 0 16 chr6 30853678 30853739 -118663298 + RSINE1 SINE B4 4 63 -102 5 820 283 346 119 39 chr6 30854166 30854476 -118662561 + L2a LINE L2 3090 3424 -2 5 820 342 0 0 0 chr6 30854736 30854774 -118662263 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 5 820 548 168 37 74 chr6 30854780 30854915 -118662122 + RSINE1 SINE B4 3 132 -33 5 820 399 41 0 0 chr6 30854915 30854964 -118662073 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 820 268 329 54 48 chr6 30854993 30855140 -118661897 - BGLII_B LTR ERVK -27 414 267 5 820 241 242 16 16 chr6 30855450 30855513 -118661524 + CT-rich Low_complexity Low_complexity 3 65 0 5 820 229 189 0 54 chr6 30857189 30857245 -118659792 - PB1 SINE Alu 0 127 75 5 820 272 190 34 13 chr6 30857852 30858002 -118659035 + GA-rich Low_complexity Low_complexity 1 153 0 5 820 324 0 0 0 chr6 30858580 30858616 -118658421 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 820 225 0 0 0 chr6 30858616 30858641 -118658396 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 820 773 227 44 44 chr6 30858641 30858668 -118658369 - B4A SINE B4 0 292 267 5 820 561 55 0 0 chr6 30858668 30858741 -118658296 + (TGG)n Simple_repeat Simple_repeat 3 75 0 5 820 773 227 44 44 chr6 30858741 30858916 -118658121 - B4A SINE B4 -26 266 90 5 820 634 212 6 110 chr6 30858953 30859117 -118657920 - ID_B1 SINE B4 -75 149 3 5 820 255 120 20 20 chr6 30859122 30859173 -118657864 - B4A SINE B4 -220 72 22 5 820 606 311 94 11 chr6 30859297 30859564 -118657473 + B4 SINE B4 1 289 -3 5 820 376 207 0 22 chr6 30859617 30859800 -118657237 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 820 305 145 13 0 chr6 30859852 30859928 -118657109 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 820 1373 221 114 26 chr6 30860492 30860877 -118656160 - MTD LTR MaLR 0 419 1 5 820 2345 156 5 29 chr6 30861194 30861611 -118655426 + MTB_Mm LTR MaLR 1 407 0 5 820 761 193 20 14 chr6 30861752 30861899 -118655138 + B1_Mur4 SINE Alu 3 150 0 5 820 23 33 0 0 chr6 30861899 30861929 -118655108 + AT_rich Low_complexity Low_complexity 1 30 0 5 820 343 209 29 15 chr6 30862964 30863032 -118654005 - ID2 SINE ID -13 70 2 5 820 441 0 0 0 chr6 30863203 30863252 -118653785 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 820 213 39 0 0 chr6 30863416 30863442 -118653595 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 5 820 1171 68 0 13 chr6 30863896 30864045 -118652992 + B1_Mm SINE Alu 1 147 0 5 820 501 17 0 0 chr6 30864051 30864109 -118652928 + (GGA)n Simple_repeat Simple_repeat 3 60 0 5 820 465 19 0 0 chr6 30864245 30864299 -118652738 + (AAATG)n Simple_repeat Simple_repeat 2 55 0 5 820 510 114 0 0 chr6 30864410 30864489 -118652548 + (TG)n Simple_repeat Simple_repeat 1 79 0 5 820 750 253 41 35 chr6 30864510 30864707 -118652330 - B3A SINE B2 0 198 1 5 820 410 257 9 0 chr6 30865295 30865404 -118651633 + PB1 SINE Alu 3 112 -15 5 820 238 276 53 0 chr6 30865406 30865482 -118651555 + GA-rich Low_complexity Low_complexity 4 83 0 5 820 252 292 19 19 chr6 30866274 30866382 -118650655 + MLT1N2 LTR MaLR 435 542 -20 5 820 340 215 0 30 chr6 30866711 30866778 -118650259 + tRNA-Ala-GCA tRNA tRNA 4 68 -7 5 820 23 33 0 0 chr6 30866778 30866808 -118650229 + AT_rich Low_complexity Low_complexity 1 30 0 5 820 805 298 49 4 chr6 30866933 30867159 -118649878 + MLT1A0 LTR MaLR 130 365 0 5 820 450 333 0 7 chr6 30867482 30867618 -118649419 + ID_B1 SINE B4 84 218 -6 5 820 745 167 0 0 chr6 30867660 30867786 -118649251 + B1_Mus1 SINE Alu 15 140 -8 5 820 297 0 0 0 chr6 30867790 30867823 -118649214 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 820 872 164 7 0 chr6 30868169 30868315 -118648722 + B1_Mur2 SINE Alu 3 149 0 5 820 181 71 0 87 chr6 30868319 30868365 -118648672 + (TCTCTG)n Simple_repeat Simple_repeat 6 47 0 5 820 249 329 20 60 chr6 30868370 30868426 -118648611 - B3 SINE B2 -15 201 151 5 820 459 0 0 0 chr6 30868426 30868477 -118648560 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 820 364 268 33 1 chr6 30868477 30868569 -118648468 - B3A SINE B2 -47 151 59 5 820 399 171 0 0 chr6 30868907 30868983 -118648054 + GA-rich Low_complexity Low_complexity 3 78 0 5 820 237 98 49 0 chr6 30868994 30869035 -118648002 + (GGAGA)n Simple_repeat Simple_repeat 1 43 0 5 820 246 290 0 0 chr6 30869037 30869106 -118647931 + L1M6 LINE L1 683 751 -5745 5 820 818 292 50 14 chr6 30869993 30870271 -118646766 - B4 SINE B4 -4 288 1 5 820 310 342 70 38 chr6 30870721 30870879 -118646158 + LTR33A LTR ERVL 1 163 -357 5 820 337 292 38 23 chr6 30871058 30871191 -118645846 - L2b LINE L2 -3 3372 3238 5 820 338 356 37 50 chr6 30871200 30871442 -118645595 + L2 LINE L2 2416 2654 -765 5 820 189 0 0 0 chr6 30871706 30871727 -118645310 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 820 486 0 0 0 chr6 30871819 30871873 -118645164 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 820 513 0 0 0 chr6 30871873 30871930 -118645107 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 820 308 279 6 75 chr6 30871938 30872097 -118644940 - RSINE1 SINE B4 -16 149 2 5 820 928 193 91 5 chr6 30872209 30872407 -118644630 - B3 SINE B2 0 216 2 5 820 329 244 49 0 chr6 30872751 30872833 -118644204 - B4 SINE B4 -205 87 2 5 820 537 299 0 15 chr6 30874178 30874314 -118642723 + RSINE1 SINE B4 6 139 -26 5 820 319 302 158 8 chr6 30874762 30874882 -118642155 + ORR1E LTR MaLR 3 140 -219 5 820 2914 57 7 31 chr6 30875108 30875523 -118641514 - RLTR10C LTR ERVK -31 405 1 5 820 2253 144 70 23 chr6 30875573 30875972 -118641065 - MTC LTR MaLR -2 419 2 5 820 307 321 101 0 chr6 30875973 30876132 -118640905 + LTR33A LTR ERVL 336 510 -10 5 820 438 20 0 0 chr6 30876505 30876556 -118640481 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 820 207 266 12 12 chr6 30876885 30876965 -118640072 + (TTG)n Simple_repeat Simple_repeat 2 81 0 5 820 412 170 110 36 chr6 30876967 30877083 -118639954 - B1_Mur4 SINE Alu 0 120 2 5 820 590 217 103 51 chr6 30877212 30877387 -118639650 + B2_Mm2 SINE B2 6 189 -6 5 820 815 117 47 0 chr6 30878145 30878273 -118638764 - RMER6A LTR ERVK -8 748 615 5 820 790 52 0 8 chr6 30878262 30878379 -118638658 - ORR1A1 LTR MaLR -230 116 1 5 820 2487 133 15 9 chr6 30878379 30878834 -118638203 - RMER6A LTR ERVK -137 619 162 5 820 3602 49 9 0 chr6 30878834 30879266 -118637771 + RLTR10C LTR ERVK 1 436 0 5 820 2868 50 0 0 chr6 30879266 30879609 -118637428 + MMERVK10C-int LTR ERVK 1 343 -7238 5 820 933 148 4 177 chr6 30879607 30879878 -118637159 + MMERVK10C-int LTR ERVK 729 952 -6629 5 820 692 242 154 70 chr6 30879966 30880354 -118636683 + MMERVK10C-int LTR ERVK 2075 2425 -4819 5 820 313 175 0 0 chr6 30880341 30880398 -118636639 + MMERVK10C-int LTR ERVK 1089 1145 -4261 5 820 362 111 0 0 chr6 30880403 30880466 -118636571 + MMERVK10C-int LTR ERVK 1885 1947 -5634 5 820 46389 9 0 0 chr6 30880472 30885500 -118631537 + MMERVK10C-int LTR ERVK 2552 7581 0 5 820 3615 46 9 0 chr6 30885500 30885932 -118631105 + RLTR10C LTR ERVK 1 436 0 5 820 1027 127 0 6 chr6 30885933 30886100 -118630937 - RMER6A LTR ERVK -590 166 1 5 820 329 242 84 0 chr6 30886154 30886249 -118630788 + ERVL-E-int LTR ERVL 3762 3864 -1803 5 820 252 282 98 18 chr6 30886262 30886374 -118630663 + L2 LINE L2 1810 1930 -1489 5 820 308 210 32 0 chr6 30886442 30886504 -118630533 - ID_B1 SINE B4 -65 159 96 5 820 262 250 17 0 chr6 30886457 30886517 -118630520 - B1F2 SINE Alu -88 61 1 5 820 397 188 0 14 chr6 30886628 30886698 -118630339 - ID4 SINE ID -13 70 2 5 820 411 211 46 37 chr6 30886990 30887098 -118629939 - PB1D10 SINE Alu 0 117 9 5 820 316 247 0 25 chr6 30887122 30887201 -118629836 + ERVL-E-int LTR ERVL 4854 4930 -784 5 820 1156 62 7 0 chr6 30887202 30887347 -118629690 + B1_Mus1 SINE Alu 2 147 -1 5 820 1151 258 18 7 chr6 30887829 30888106 -118628931 - B4 SINE B4 0 292 13 5 820 810 249 129 91 chr6 30888551 30888914 -118628123 + MTE2a LTR MaLR 1 377 -2 5 820 877 163 14 21 chr6 30889903 30890047 -118626990 + B1_Mur2 SINE Alu 1 143 -6 5 820 302 45 23 0 chr6 30890054 30890098 -118626939 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 5 820 228 232 83 67 chr6 30890374 30890494 -118626543 + L1ME4a LINE L1 5941 6062 -62 5 820 1990 59 57 20 chr6 30891034 30891330 -118625707 - IAPLTR2b LTR ERVK -20 307 1 5 820 207 100 0 0 chr6 30891395 30891425 -118625612 + (CCCCAG)n Simple_repeat Simple_repeat 1 30 0 5 820 238 298 116 11 chr6 30891425 30891520 -118625517 + LTR33 LTR ERVL 409 513 -2 5 820 427 317 17 0 chr6 30891581 30891701 -118625336 - Lx9 LINE L1 -981 6663 6542 5 820 522 241 22 35 chr6 30891743 30892053 -118624984 - Lx9 LINE L1 -1591 6053 5734 5 820 258 81 0 0 chr6 30893505 30893542 -118623495 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 820 387 299 105 54 chr6 30893558 30893834 -118623203 - B4A SINE B4 0 292 3 5 820 240 35 0 0 chr6 30893856 30893885 -118623152 + (CAGA)n Simple_repeat Simple_repeat 1 29 0 5 820 270 357 91 0 chr6 30893960 30894114 -118622923 + ID_B1 SINE B4 3 170 -54 5 820 1205 362 133 32 chr6 30894615 30894841 -118622196 + L2a LINE L2 1074 1311 -2108 5 820 871 18 78 6 chr6 30894841 30895008 -118622029 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 820 1112 119 0 6 chr6 30895008 30895186 -118621851 + (GGGA)n Simple_repeat Simple_repeat 2 178 0 5 820 1205 362 133 32 chr6 30895186 30896652 -118620385 + L2a LINE L2 1312 2937 -482 5 820 327 293 223 20 chr6 30896697 30896997 -118620040 + L2a LINE L2 3048 3408 -18 5 820 207 0 0 0 chr6 30897432 30897455 -118619582 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 820 263 257 44 106 chr6 30899236 30899349 -118617688 - PB1D7 SINE Alu -1 119 14 5 820 656 205 3 7 chr6 30899522 30899812 -118617225 + (TG)n Simple_repeat Simple_repeat 1 288 0 5 820 372 309 134 34 chr6 30900697 30900725 -118616312 - L1M5 LINE L1 -2256 3890 3866 5 820 1402 80 21 0 chr6 30900725 30900913 -118616124 - B2_Mm2 SINE B2 -2 193 2 5 820 372 309 134 34 chr6 30900913 30901152 -118615885 - L1M5 LINE L1 -2281 3865 3597 5 820 378 0 0 0 chr6 30901175 30901217 -118615820 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 820 599 157 37 0 chr6 30901218 30901326 -118615711 - B3 SINE B2 -70 146 35 6 820 31 0 0 0 chr6 30901497 30901528 -118615509 + AT_rich Low_complexity Low_complexity 1 31 0 6 820 338 0 0 23 chr6 30902349 30902392 -118614645 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 6 820 742 138 24 0 chr6 30902394 30902517 -118614520 - B1_Mus2 SINE Alu -12 135 10 6 820 27 0 0 0 chr6 30903936 30903963 -118613074 + AT_rich Low_complexity Low_complexity 1 27 0 6 820 189 0 0 0 chr6 30904131 30904152 -118612885 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 820 533 115 0 11 chr6 30904633 30904721 -118612316 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 6 820 227 234 15 30 chr6 30904832 30904898 -118612139 + PB1D9 SINE Alu 7 71 -49 6 820 202 133 67 0 chr6 30905538 30905583 -118611454 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 6 820 192 179 0 0 chr6 30906391 30906430 -118610607 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 820 180 0 0 0 chr6 30906995 30907015 -118610022 + (A)n Simple_repeat Simple_repeat 1 20 0 6 820 24 0 0 0 chr6 30909836 30909860 -118607177 + AT_rich Low_complexity Low_complexity 1 24 0 6 820 855 281 117 49 chr6 30910822 30911429 -118605608 - L1ME3B LINE L1 -299 5941 5294 6 820 338 348 42 69 chr6 30911768 30912147 -118604890 - L1ME3B LINE L1 -1234 4912 4544 6 820 268 316 97 50 chr6 30912562 30913038 -118603999 - L1ME3B LINE L1 -2118 4028 3548 6 820 275 222 0 12 chr6 30913211 30913293 -118603744 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 820 300 317 112 75 chr6 30914417 30915072 -118601965 + L2 LINE L2 2100 2778 -641 6 820 327 345 119 5 chr6 30915486 30915696 -118601341 - L2a LINE L2 -7 3419 3186 6 820 459 228 79 0 chr6 30915773 30915874 -118601163 + B1_Mur2 SINE Alu 28 136 -13 6 820 273 29 0 0 chr6 30915874 30915908 -118601129 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 820 664 156 0 16 chr6 30915909 30916091 -118600946 + GA-rich Low_complexity Low_complexity 2 180 0 6 820 312 283 0 48 chr6 30916148 30916252 -118600785 - MLT1D LTR MaLR -18 487 389 6 820 301 222 0 27 chr6 30916360 30916434 -118600603 + RSINE1 SINE B4 41 112 -53 6 820 335 306 120 35 chr6 30916467 30916667 -118600370 - MLT1D LTR MaLR -283 222 6 6 820 237 360 55 18 chr6 30916795 30917013 -118600024 - L2a LINE L2 -569 2850 2625 6 820 255 306 81 10 chr6 30917591 30917690 -118599347 + L1MA6 LINE L1 6023 6128 -172 6 820 288 322 0 42 chr6 30919060 30919180 -118597857 + HAL1 LINE L1 1530 1644 -863 6 820 426 39 0 0 chr6 30919588 30919640 -118597397 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 6 820 194 0 39 0 chr6 30920578 30920604 -118596433 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 820 248 265 0 0 chr6 30920664 30920713 -118596324 + ID_B1 SINE B4 153 201 -23 6 820 297 0 0 0 chr6 30920723 30920756 -118596281 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 6 820 21 0 0 0 chr6 30921661 30921682 -118595355 + AT_rich Low_complexity Low_complexity 1 21 0 6 820 183 80 0 0 chr6 30922326 30922351 -118594686 + (CAAAG)n Simple_repeat Simple_repeat 1 25 0 6 820 290 282 44 94 chr6 30922362 30922592 -118594445 + L1MD LINE L1 4180 4396 -1750 6 820 265 206 0 27 chr6 30922884 30922957 -118594080 + PB1D10 SINE Alu 58 140 -9 6 820 288 250 56 99 chr6 30922990 30923132 -118593905 + L1MC3 LINE L1 4958 5093 -1053 6 820 273 57 0 0 chr6 30923134 30923169 -118593868 + (T)n Simple_repeat Simple_repeat 1 35 0 6 820 1088 43 36 0 chr6 30923172 30923310 -118593727 - B1_Mus2 SINE Alu 0 147 5 6 820 438 261 101 15 chr6 30923392 30923766 -118593271 + L1MC3 LINE L1 5153 5571 -608 6 820 803 164 34 0 chr6 30924007 30924153 -118592884 + B3A SINE B2 1 151 -47 6 820 465 76 0 0 chr6 30924155 30924221 -118592816 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 820 402 57 0 0 chr6 30924233 30924286 -118592751 + (TAA)n Simple_repeat Simple_repeat 3 55 0 6 820 226 324 121 17 chr6 30924286 30924459 -118592578 + L1MC3 LINE L1 5964 6154 -1631 6 820 764 212 206 6 chr6 30924505 30924685 -118592352 - B3 SINE B2 0 216 1 6 820 247 310 0 0 chr6 30925137 30925195 -118591842 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 820 483 295 43 31 chr6 30925215 30925376 -118591661 - RSINE1 SINE B4 0 165 3 6 820 237 254 145 26 chr6 30925385 30925502 -118591535 + L1M5 LINE L1 5569 5699 -463 6 820 388 214 44 125 chr6 30925877 30926037 -118591000 - B1F SINE Alu -2 147 1 6 820 540 100 0 29 chr6 30926408 30926474 -118590563 + (GAA)n Simple_repeat Simple_repeat 2 66 0 6 820 1065 78 0 32 chr6 30926474 30926659 -118590378 + (GGA)n Simple_repeat Simple_repeat 2 180 0 6 820 540 100 0 29 chr6 30926659 30926695 -118590342 + (GAA)n Simple_repeat Simple_repeat 1 34 0 6 820 204 97 0 0 chr6 30927077 30927108 -118589929 + (CAGA)n Simple_repeat Simple_repeat 3 33 0 6 820 257 345 71 0 chr6 30928254 30928367 -118588670 - MER5A DNA MER1_type -68 121 1 6 820 540 214 158 7 chr6 30928411 30928557 -118588480 + ID_B1 SINE B4 57 224 0 6 820 258 311 14 0 chr6 30928589 30928663 -118588374 - LTR85a LTR Gypsy? -44 658 584 6 820 436 274 9 0 chr6 30929561 30929674 -118587363 + PB1D10 SINE Alu 3 116 -1 6 820 333 323 7 36 chr6 30930579 30930717 -118586320 + L2b LINE L2 3238 3371 -4 6 820 245 267 45 54 chr6 30930737 30930848 -118586189 + Lx8 LINE L1 7004 7113 -360 6 820 220 333 61 45 chr6 30931662 30931753 -118585284 - MIR SINE MIR -18 244 149 6 820 1004 51 65 7 chr6 30931753 30931880 -118585157 + B1_Mus2 SINE Alu 1 136 -11 6 820 180 77 0 0 chr6 30931880 30931906 -118585131 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 6 820 1004 51 65 7 chr6 30931906 30931917 -118585120 + B1_Mus2 SINE Alu 137 147 0 6 820 220 333 61 45 chr6 30931917 30932023 -118585014 - MIR SINE MIR -114 148 44 6 820 225 0 0 0 chr6 30932887 30932912 -118584125 + (T)n Simple_repeat Simple_repeat 1 25 0 6 102 3820 154 36 16 chr6 30932957 30933628 -118583409 - Lx5 LINE L1 -3 7047 6364 6 821 21 0 0 0 chr6 30934295 30934316 -118582721 + AT_rich Low_complexity Low_complexity 1 21 0 6 821 418 175 31 23 chr6 30934541 30934670 -118582367 + G-rich Low_complexity Low_complexity 6 135 0 6 821 787 282 70 14 chr6 30934680 30934964 -118582073 - Lx7 LINE L1 -1805 5891 5592 6 821 2167 161 13 5 chr6 30935009 30935390 -118581647 + ORR1B1 LTR MaLR 3 386 -8 6 821 318 292 128 41 chr6 30935393 30935518 -118581519 - L1M4c LINE L1 -741 6410 6269 6 821 4206 142 61 10 chr6 30935518 30936237 -118580800 - RMER6A LTR ERVK 0 756 1 6 821 318 299 153 35 chr6 30936237 30936486 -118580551 - L1M4c LINE L1 -883 6268 5928 6 821 311 311 115 0 chr6 30936558 30936706 -118580331 - L1M4c LINE L1 -1175 5828 5664 6 821 477 269 55 19 chr6 30936721 30937016 -118580021 - L1M4c LINE L1 -3853 3147 2882 6 821 287 219 123 9 chr6 30937014 30937120 -118579917 - Lx7 LINE L1 -16 7680 7563 6 821 329 244 48 55 chr6 30937108 30937273 -118579764 - Lx7 LINE L1 -235 7461 7298 6 821 3986 193 33 24 chr6 30937270 30937918 -118579119 - Lx2B LINE L1 -18 6982 6325 6 821 3131 48 12 25 chr6 30937918 30938322 -118578715 - MTB LTR MaLR 0 400 2 6 821 3986 193 33 24 chr6 30938322 30938495 -118578542 - Lx2B LINE L1 -676 6324 6154 6 821 3539 240 50 13 chr6 30938500 30939344 -118577693 - Lx7 LINE L1 -385 7311 6437 6 821 335 17 0 78 chr6 30939347 30939411 -118577626 + (TCTCCC)n Simple_repeat Simple_repeat 2 60 0 6 821 631 204 179 0 chr6 30939432 30939594 -118577443 + ORR1C2 LTR MaLR 174 364 -20 6 821 295 196 0 0 chr6 30939636 30939692 -118577345 - L1MDa LINE L1 -2245 4292 4237 6 821 1851 195 23 3 chr6 30939863 30940213 -118576824 - Lx9 LINE L1 -418 7226 6870 6 821 285 242 80 127 chr6 30940258 30940471 -118576566 - L1MDa LINE L1 -5220 1413 1211 6 821 1196 55 7 0 chr6 30940536 30940681 -118576356 + B1_Mus2 SINE Alu 2 147 0 6 821 195 69 0 0 chr6 30940681 30940710 -118576327 + (A)n Simple_repeat Simple_repeat 1 29 0 6 821 702 224 0 7 chr6 30940710 30940845 -118576192 - B1_Mus2 SINE Alu -13 134 1 6 821 361 310 80 6 chr6 30941151 30941343 -118575694 - L1MD2 LINE L1 -21 6338 6150 6 821 290 313 59 20 chr6 30941527 30941680 -118575357 - L1ME1 LINE L1 -296 5883 5725 6 821 367 306 35 98 chr6 30941680 30941854 -118575183 + RSINE1 SINE B4 3 165 0 6 821 289 318 132 23 chr6 30942106 30942443 -118574594 - L2a LINE L2 -233 3193 2814 6 821 357 24 0 0 chr6 30942452 30942494 -118574543 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 6 821 2686 187 58 137 chr6 30942496 30943221 -118573816 + RMER1C Other Other 675 1342 0 6 821 230 236 186 67 chr6 30943403 30943680 -118573357 - L1ME3 LINE L1 -195 5967 5648 6 821 318 67 0 0 chr6 30943764 30943809 -118573228 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 821 240 232 137 0 chr6 30943842 30943937 -118573100 + L1M2 LINE L1 2399 2506 -3637 6 821 234 0 0 0 chr6 30943954 30943980 -118573057 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 821 722 309 23 9 chr6 30943998 30944214 -118572823 - B4A SINE B4 -18 274 56 6 821 359 263 143 37 chr6 30944262 30944562 -118572475 - L1M2 LINE L1 -3611 2532 2201 6 821 355 311 9 19 chr6 30945039 30945147 -118571890 - PB1D10 SINE Alu -1 116 10 6 821 578 125 36 71 chr6 30945152 30945264 -118571773 - RMER1A Other Other -2 1028 921 6 821 1625 141 109 6 chr6 30945266 30945587 -118571450 - ORR1B1 LTR MaLR 0 394 41 6 821 5743 148 6 85 chr6 30945601 30945958 -118571079 - ORR1B1-int LTR MaLR 0 1792 1539 6 821 1290 20 0 0 chr6 30945958 30946105 -118570932 + B1_Mm SINE Alu 1 147 0 6 821 5743 114 2 27 chr6 30946105 30946946 -118570091 - ORR1B1-int LTR MaLR -253 1710 877 6 821 29651 17 1 0 chr6 30947009 30950269 -118566768 - IAPEz-int LTR ERVK -8 6473 3210 6 821 1398 93 0 0 chr6 30950268 30950451 -118566586 - IAPEz-int LTR ERVK -5168 1313 1131 6 821 327 67 0 0 chr6 30950451 30950496 -118566541 - IAPLTR1a_Mm LTR ERVK -292 45 1 6 821 6373 154 60 50 chr6 30950496 30951869 -118565168 - ORR1B1-int LTR MaLR -576 1387 1 6 821 1893 147 41 18 chr6 30951869 30952082 -118564955 - ORR1B1 LTR MaLR 0 394 185 6 821 2977 6 5 101 chr6 30952082 30952488 -118564549 - IAPLTR1_Mm LTR ERVK 0 367 1 6 821 1893 147 41 18 chr6 30952488 30952614 -118564423 - ORR1B1 LTR MaLR -210 184 47 6 821 3677 170 94 18 chr6 30952634 30953347 -118563690 - RMER1A Other Other -126 904 138 6 821 619 231 23 96 chr6 30953397 30953574 -118563463 - RSINE1 SINE B4 0 165 2 6 821 534 315 0 7 chr6 30953730 30953874 -118563163 + B4 SINE B4 22 164 -128 6 821 1685 130 159 37 chr6 30953881 30954232 -118562805 - ORR1B1 LTR MaLR 0 394 1 6 821 5736 184 174 3 chr6 30954232 30955521 -118561516 - ORR1B1-int LTR MaLR 0 1509 1 6 821 1164 159 120 27 chr6 30955525 30955851 -118561186 - ORR1B1 LTR MaLR -8 321 1 6 821 363 174 18 13 chr6 30955853 30955943 -118561094 + B4 SINE B4 168 260 -32 6 821 323 273 59 94 chr6 30955971 30956141 -118560896 + RLTR42-int LTR ERVK 1165 1328 -4194 6 821 210 71 0 0 chr6 30957392 30957420 -118559617 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 821 390 159 0 0 chr6 30957689 30957758 -118559279 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 821 326 221 38 22 chr6 30958891 30958991 -118558046 + PB1D10 SINE Alu 17 117 0 7 821 1888 155 62 30 chr6 30959227 30959281 -118557756 + ORR1C2 LTR MaLR 1 54 -330 7 821 3065 23 0 3 chr6 30959281 30959628 -118557409 + ORR1A0 LTR MaLR 1 346 0 7 821 1888 155 62 30 chr6 30959628 30959945 -118557092 + ORR1C2 LTR MaLR 55 384 0 7 821 2722 218 80 83 chr6 30960347 30961163 -118555874 + RMER1C Other Other 523 1335 -7 7 821 441 0 0 0 chr6 30961201 30961250 -118555787 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 821 501 17 0 0 chr6 30961666 30961724 -118555313 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 821 442 259 54 0 chr6 30962398 30962508 -118554529 + ID_B1 SINE B4 11 126 -98 7 821 6114 90 15 15 chr6 30962508 30963445 -118553592 + RLTR13D5 LTR ERVK 1 937 -86 7 821 254 188 96 96 chr6 30963460 30963554 -118553483 + PB1 SINE Alu 27 120 -7 7 821 379 174 151 0 chr6 30963473 30963559 -118553478 + ID_B1 SINE B4 123 221 -3 7 821 612 101 0 0 chr6 30964159 30964248 -118552789 + (CA)n Simple_repeat Simple_repeat 2 90 0 7 821 2089 150 101 16 chr6 30964674 30965059 -118551978 - MTC LTR MaLR -3 418 1 7 821 512 284 108 65 chr6 30965556 30965835 -118551202 - B4 SINE B4 0 292 2 7 821 202 283 0 0 chr6 30966902 30966962 -118550075 + CT-rich Low_complexity Low_complexity 1 60 0 7 821 1116 293 15 7 chr6 30968137 30968479 -118548558 + RMER1B Other Other 76 742 -600 7 821 4118 144 24 5 chr6 30968481 30969152 -118547885 - IAPEY3-int LTR ERVK -2 7678 6995 7 821 1538 89 112 0 chr6 30969156 30969380 -118547657 - IAP-d-int LTR ERVK -1287 5255 5007 7 821 359 175 0 0 chr6 30969380 30969437 -118547600 - IAP-d-int LTR ERVK -6039 503 447 7 821 476 323 60 34 chr6 30969454 30969839 -118547198 - RLTR10-int LTR ERVK -6015 1566 1172 7 821 2971 30 6 0 chr6 30969864 30970203 -118546834 - RLTR10-int LTR ERVK -995 992 652 7 821 300 119 0 0 chr6 30970206 30970248 -118546789 - RLTR10-int LTR ERVK -6405 137 96 7 821 709 0 44 0 chr6 30970248 30970339 -118546698 + (TTTCC)n Simple_repeat Simple_repeat 4 98 0 7 821 406 43 0 0 chr6 30970446 30970492 -118546545 - RLTR10-int LTR ERVK -7314 267 222 7 821 233 269 0 0 chr6 30970492 30970544 -118546493 - RLTR27 LTR ERVK -37 272 221 7 821 1327 54 48 0 chr6 30970544 30970712 -118546325 - RLTR10-int LTR ERVK -1787 200 25 7 821 1731 140 43 7 chr6 30970721 30971022 -118546015 - RLTR10E LTR ERVK -2 388 1 7 821 2531 256 49 87 chr6 30971022 30971482 -118545555 + RMER1B Other Other 167 808 -534 7 821 1852 115 31 116 chr6 30971482 30971836 -118545201 + ORR1A2 LTR MaLR 1 324 -3 7 821 2531 237 52 100 chr6 30971836 30972386 -118544651 + RMER1B Other Other 529 1052 -14 7 821 1050 258 96 39 chr6 30972746 30973133 -118543904 - L1MA4A LINE L1 -376 5927 5519 7 821 643 96 0 0 chr6 30973136 30973230 -118543807 - ORR1A4 LTR MaLR -8 321 228 7 821 912 275 35 81 chr6 30973231 30973833 -118543204 + L1M3 LINE L1 3344 3944 -2196 7 821 5736 232 119 16 chr6 30974053 30974512 -118542525 + L1_Rod LINE L1 899 1396 -4451 7 821 1794 186 100 104 chr6 30974512 30975022 -118542015 + RLTR18B LTR ERVK 1 508 -4 7 821 5736 253 95 30 chr6 30975022 30975876 -118541161 + L1_Rod LINE L1 1397 2307 -3540 7 821 2305 80 51 0 chr6 30975876 30976189 -118540848 + ORR1A4 LTR MaLR 1 329 0 7 821 5736 253 95 30 chr6 30976189 30977207 -118539830 + L1_Rod LINE L1 2308 3404 -2443 7 821 2084 145 35 5 chr6 30977207 30977582 -118539455 + ORR1B1 LTR MaLR 1 386 -8 7 821 2354 188 18 74 chr6 30977586 30977957 -118539080 + ORR1B1-int LTR MaLR 1 357 -1606 7 821 2416 87 6 3 chr6 30977957 30978281 -118538756 + ORR1A2 LTR MaLR 1 325 -2 7 821 2354 188 18 74 chr6 30978281 30978479 -118538558 + ORR1B1-int LTR MaLR 358 538 -1425 7 821 1551 125 11 39 chr6 30978477 30978760 -118538277 - RMER4B LTR ERVK -309 276 2 7 821 340 178 189 14 chr6 30978783 30978857 -118538180 + Lx9 LINE L1 5875 5961 -1683 7 821 539 233 243 14 chr6 30978878 30979100 -118537937 + MTC LTR MaLR 148 420 -1 7 821 3180 44 39 0 chr6 30979194 30979579 -118537458 + MTB LTR MaLR 1 400 0 7 821 1155 88 0 0 chr6 30979617 30979764 -118537273 - B1_Mus2 SINE Alu 0 147 1 7 821 1214 268 146 4 chr6 30979789 30980309 -118536728 + Tigger1 DNA MER2_type 1655 2248 -170 7 821 315 232 257 14 chr6 30980311 30980455 -118536582 + B3A SINE B2 4 182 -16 7 821 303 28 0 0 chr6 30980777 30980813 -118536224 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 821 492 299 125 60 chr6 30980931 30981362 -118535675 + Arthur1B DNA Tip100 24 482 -743 7 821 236 301 183 10 chr6 30981460 30981564 -118535473 + Arthur1B DNA Tip100 614 735 -490 7 821 304 294 117 47 chr6 30981596 30981656 -118535381 + Arthur1B DNA Tip100 797 855 -370 7 821 500 237 101 29 chr6 30981656 30981795 -118535242 + B1F2 SINE Alu 1 149 0 7 821 304 288 246 14 chr6 30981795 30982099 -118534938 + Arthur1B DNA Tip100 856 1225 0 7 821 381 43 0 0 chr6 30982263 30982310 -118534727 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 821 252 345 33 71 chr6 30982369 30982553 -118534484 - B4A SINE B4 -114 178 2 7 821 258 32 0 0 chr6 30982596 30982627 -118534410 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 821 642 284 50 18 chr6 30982637 30982856 -118534181 - L1ME2 LINE L1 -59 6105 5880 7 821 580 320 98 46 chr6 30982877 30983287 -118533750 + MLT2B2 LTR ERVL 10 440 -75 7 821 456 104 0 0 chr6 30983489 30983556 -118533481 + (TC)n Simple_repeat Simple_repeat 2 68 0 7 821 203 171 0 0 chr6 30983636 30983677 -118533360 + A-rich Low_complexity Low_complexity 1 41 0 7 821 453 274 216 13 chr6 30983768 30984178 -118532859 - L1ME2 LINE L1 -375 5787 5297 7 821 1061 102 0 13 chr6 30984306 30984455 -118532582 - B1_Mm SINE Alu 0 147 1 7 821 1155 266 121 15 chr6 30984637 30985176 -118531861 - L1MA9 LINE L1 -94 6218 5623 7 821 293 226 0 0 chr6 30985774 30985851 -118531186 - ID4 SINE ID -67 85 9 7 821 2282 72 3 3 chr6 30985964 30986283 -118530754 + ORR1A2 LTR MaLR 1 319 -8 7 821 338 331 27 34 chr6 30986289 30986436 -118530601 - MLT1A LTR MaLR -227 147 2 7 821 722 168 104 0 chr6 30986819 30986944 -118530093 + B1_Mur4 SINE Alu 5 142 -8 7 821 288 0 0 0 chr6 30987159 30987191 -118529846 + (TTA)n Simple_repeat Simple_repeat 2 33 0 7 821 2287 160 93 10 chr6 30987191 30987608 -118529429 - RMER1B Other Other -22 1044 593 7 821 253 306 94 6 chr6 30987806 30987977 -118529060 - MLT1C LTR MaLR -234 233 48 7 821 261 0 0 0 chr6 30988305 30988334 -118528703 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 821 596 26 13 0 chr6 30988464 30988542 -118528495 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 7 821 585 0 0 0 chr6 30988691 30988756 -118528281 + (TTTC)n Simple_repeat Simple_repeat 3 67 0 7 821 2876 50 0 14 chr6 30988803 30989171 -118527866 - L1Md_F2 LINE L1 -6 6576 6214 7 821 334 312 15 15 chr6 30989206 30989336 -118527701 + L1ME3A LINE L1 6031 6160 -13 7 821 548 198 164 8 chr6 30989454 30989576 -118527461 - B1_Mur1 SINE Alu -8 141 1 7 821 310 143 88 38 chr6 30989821 30989901 -118527136 + RLTR25B LTR ERVK 426 509 -519 7 821 760 65 0 0 chr6 30989836 30989935 -118527102 + B1_Mus2 SINE Alu 40 138 -9 7 821 306 0 0 0 chr6 30989935 30989969 -118527068 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 821 1474 79 26 0 chr6 30989981 30990171 -118526866 + B2_Mm2 SINE B2 1 195 0 7 821 958 166 28 11 chr6 30990328 30990505 -118526532 - B3A SINE B2 -18 180 1 7 821 523 227 23 0 chr6 30990556 30990684 -118526353 - B3A SINE B2 -67 131 1 7 821 423 0 0 0 chr6 30990696 30990743 -118526294 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 821 221 303 26 52 chr6 30991775 30991890 -118525147 + L2 LINE L2 2245 2356 -1063 7 821 22 35 0 0 chr6 30992067 30992096 -118524941 + AT_rich Low_complexity Low_complexity 1 29 0 7 821 405 0 0 0 chr6 30992129 30992174 -118524863 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 821 194 325 80 31 chr6 30992577 30992739 -118524298 + L2 LINE L2 2696 2865 -554 7 821 289 328 82 7 chr6 30992945 30993080 -118523957 - MLT1I LTR MaLR -55 356 212 7 821 627 260 74 65 chr6 30993873 30994142 -118522895 - B4A SINE B4 -12 280 1 7 821 2476 97 12 3 chr6 30994520 30994863 -118522174 - ORR1A1 LTR MaLR 0 346 1 7 821 282 277 24 0 chr6 30994952 30995035 -118522002 + MER94 DNA AcHobo 41 125 -9 7 821 370 31 0 86 chr6 30996366 30996436 -118520601 + (T)n Simple_repeat Simple_repeat 1 64 0 7 821 1610 176 99 37 chr6 30997064 30997447 -118519590 - MTD LTR MaLR -12 407 1 7 821 282 250 123 15 chr6 30997478 30997608 -118519429 + B1F1 SINE Alu 3 146 -3 7 821 288 0 0 0 chr6 30997613 30997645 -118519392 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 821 288 198 0 24 chr6 30997664 30997747 -118519290 + A-rich Low_complexity Low_complexity 3 83 0 7 821 235 270 0 0 chr6 30997896 30997959 -118519078 - MER3 DNA MER1_type -1 208 146 7 821 440 242 31 8 chr6 30998043 30998172 -118518865 - ORR1E LTR MaLR -222 137 6 7 821 238 260 54 14 chr6 30998229 30998303 -118518734 + PB1 SINE Alu 49 125 -2 7 821 307 262 5 80 chr6 30998412 30998599 -118518438 + G-rich Low_complexity Low_complexity 1 173 0 7 821 305 216 108 0 chr6 30998749 30998823 -118518214 + ID4_ SINE ID 2 83 0 7 821 1095 194 35 0 chr6 30999579 30999780 -118517257 + B3 SINE B2 2 209 -7 7 821 229 311 0 0 chr6 31000094 31000155 -118516882 + CT-rich Low_complexity Low_complexity 3 63 0 1 821 499 264 78 33 chr6 31000303 31000483 -118516554 - MLT2D LTR ERVL -114 300 113 2 821 333 0 0 0 chr6 31000592 31000629 -118516408 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 821 403 301 21 7 chr6 31000633 31000777 -118516260 - L1MA10 LINE L1 -11 6323 6178 4 821 262 203 43 0 chr6 31000880 31000949 -118516088 - L1MB1 LINE L1 -125 6064 5993 5 821 315 279 76 0 chr6 31002385 31002464 -118514573 + PB1D10 SINE Alu 26 110 -7 6 821 252 0 0 0 chr6 31002522 31002550 -118514487 + (A)n Simple_repeat Simple_repeat 1 28 0 7 821 762 239 153 71 chr6 31003573 31003938 -118513099 + RMER13A LTR ERVK 95 489 -371 8 821 432 0 0 0 chr6 31004438 31004486 -118512551 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 821 468 0 0 0 chr6 31004486 31004537 -118512500 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 821 935 284 90 8 chr6 31004537 31004782 -118512255 - B4 SINE B4 -23 269 5 1 821 302 239 12 112 chr6 31005196 31005276 -118511761 - ID4_ SINE ID -8 75 4 1 821 225 0 0 0 chr6 31007159 31007184 -118509853 + (T)n Simple_repeat Simple_repeat 1 25 0 1 821 317 260 211 15 chr6 31007328 31007482 -118509555 - MTEb LTR MaLR -5 374 213 1 821 422 278 17 9 chr6 31007736 31007852 -118509185 + PB1D10 SINE Alu 1 117 0 1 821 839 209 25 25 chr6 31007905 31008067 -118508970 + B3A SINE B2 1 162 -36 1 821 387 217 123 0 chr6 31008110 31008216 -118508821 + PB1D9 SINE Alu 1 119 -1 1 821 285 98 0 0 chr6 31008216 31008257 -118508780 + (GGA)n Simple_repeat Simple_repeat 2 42 0 1 821 313 328 66 44 chr6 31008257 31008439 -118508598 + HAL1 LINE L1 459 644 -1863 1 821 346 289 0 11 chr6 31008473 31008564 -118508473 + LTR33C LTR ERVL 31 120 -509 2 821 348 295 68 31 chr6 31008977 31009138 -118507899 - MLT1D LTR MaLR -93 412 246 2 821 243 301 108 0 chr6 31009217 31009300 -118507737 - MLT1D LTR MaLR -381 124 33 2 821 401 239 137 46 chr6 31009300 31009475 -118507562 - B2_Mm2 SINE B2 -4 191 1 2 821 567 316 106 14 chr6 31011088 31011447 -118505590 + L1MB8 LINE L1 5736 6127 -51 2 821 642 225 95 63 chr6 31012001 31012191 -118504846 - RMER30 DNA MER1_type 0 202 7 2 821 205 273 0 0 chr6 31013549 31013593 -118503444 + (CTA)n Simple_repeat Simple_repeat 3 46 0 2 821 495 134 36 12 chr6 31013595 31013678 -118503359 - PB1D9 SINE Alu -9 111 27 2 821 256 206 73 0 chr6 31013951 31014019 -118503018 - Lx9 LINE L1 -67 7577 7505 2 821 22 0 0 0 chr6 31014288 31014310 -118502727 + AT_rich Low_complexity Low_complexity 1 22 0 2 821 252 0 0 0 chr6 31014623 31014651 -118502386 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 2 821 543 160 238 21 chr6 31014727 31014901 -118502136 + B3A SINE B2 1 199 -17 3 821 243 238 36 48 chr6 31016574 31016658 -118500379 + Tigger1 DNA MER2_type 874 956 -1462 3 821 656 206 8 15 chr6 31017412 31017545 -118499492 - B1_Mur3 SINE Alu -13 136 5 3 821 272 270 18 53 chr6 31017551 31017692 -118499345 - L1MA4 LINE L1 -361 5951 5815 3 821 222 37 0 0 chr6 31017879 31017906 -118499131 + (GGA)n Simple_repeat Simple_repeat 1 27 0 3 821 299 258 32 0 chr6 31018654 31018716 -118498321 + B1F1 SINE Alu 1 64 -85 3 821 243 0 0 0 chr6 31019879 31019906 -118497131 + (A)n Simple_repeat Simple_repeat 1 27 0 3 821 249 217 47 62 chr6 31020013 31020077 -118496960 + B3 SINE B2 15 77 -139 3 821 348 263 0 13 chr6 31022922 31022999 -118494038 + B4A SINE B4 2 77 -215 3 821 344 278 22 22 chr6 31023029 31023121 -118493916 + B4A SINE B4 150 241 -51 3 821 516 223 7 110 chr6 31023802 31023948 -118493089 + ID_B1 SINE B4 94 224 0 3 821 187 194 0 0 chr6 31024401 31024432 -118492605 - MIRb SINE MIR -29 239 209 4 821 186 43 0 0 chr6 31026137 31026160 -118490877 + (CAG)n Simple_repeat Simple_repeat 2 24 0 4 821 1075 188 31 31 chr6 31028754 31028979 -118488058 + URR1A DNA MER1_type 1 225 -1 4 821 594 0 0 0 chr6 31030002 31030068 -118486969 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 821 232 218 54 18 chr6 31030576 31030632 -118486405 - LTR33A LTR ERVL -315 205 148 4 821 217 374 8 25 chr6 31031124 31031242 -118485795 + MIRb SINE MIR 27 142 -126 4 821 536 260 7 27 chr6 31031742 31031892 -118485145 - B1F1 SINE Alu -2 147 1 4 821 269 269 56 0 chr6 31033733 31033841 -118483196 + L1ME2z LINE L1 6317 6430 -14 4 821 538 221 72 14 chr6 31034636 31034774 -118482263 + B1F1 SINE Alu 3 148 -1 4 821 441 0 0 0 chr6 31034774 31034823 -118482214 + (CCA)n Simple_repeat Simple_repeat 2 50 0 4 821 331 256 13 13 chr6 31039957 31040036 -118477001 - ID4 SINE ID -3 80 2 5 821 267 283 132 9 chr6 31040920 31041034 -118476003 - MIRc SINE MIR -84 184 57 5 821 1177 68 0 7 chr6 31042200 31042348 -118474689 + B1_Mus1 SINE Alu 2 148 0 5 821 283 186 0 19 chr6 31043096 31043200 -118473837 + (CA)n Simple_repeat Simple_repeat 2 103 0 5 821 25 31 0 0 chr6 31043765 31043797 -118473240 + AT_rich Low_complexity Low_complexity 1 32 0 5 821 481 213 53 0 chr6 31044017 31044111 -118472926 + RSINE1 SINE B4 8 106 -59 5 821 405 322 53 39 chr6 31044310 31044594 -118472443 + B4A SINE B4 1 288 -4 5 821 195 42 0 0 chr6 31045854 31045878 -118471159 + (CG)n Simple_repeat Simple_repeat 2 25 0 5 821 468 0 0 0 chr6 31045878 31045929 -118471108 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 821 558 0 0 0 chr6 31045993 31046055 -118470982 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 821 202 298 0 0 chr6 31049461 31049508 -118467529 + polypurine Low_complexity Low_complexity 4 50 0 6 821 285 29 0 0 chr6 31049516 31049550 -118467487 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 6 821 513 0 0 0 chr6 31052455 31052512 -118464525 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 821 306 0 0 0 chr6 31054289 31054323 -118462714 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 821 201 302 109 34 chr6 31054873 31055000 -118462037 + MIR SINE MIR 10 160 -116 6 821 370 381 26 11 chr6 31055418 31055609 -118461428 + MIR SINE MIR 7 200 -62 6 821 270 0 0 0 chr6 31055949 31055979 -118461058 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 821 378 0 0 0 chr6 31055979 31056020 -118461017 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 821 599 290 95 27 chr6 31056089 31056351 -118460686 - MLT2D LTR ERVL -107 307 28 6 821 475 132 0 0 chr6 31058734 31058802 -118458235 - PB1D9 SINE Alu -2 118 51 6 821 551 218 9 18 chr6 31058880 31058992 -118458045 - PB1D9 SINE Alu 0 120 10 7 821 473 302 45 106 chr6 31059609 31059920 -118457117 + B4A SINE B4 1 292 0 7 821 202 140 0 23 chr6 31062985 31063029 -118454008 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 822 234 0 0 0 chr6 31064944 31064970 -118452067 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 7 822 223 159 45 0 chr6 31065338 31065382 -118451655 + A-rich Low_complexity Low_complexity 2 47 0 7 822 279 271 107 58 chr6 31066395 31066572 -118450465 - MIRm SINE MIR -82 186 1 7 822 292 327 194 28 chr6 31067386 31067597 -118449440 + MER47B DNA MER2_type 3 248 -170 7 822 309 109 0 0 chr6 31067661 31067707 -118449330 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 822 305 216 108 0 chr6 31067869 31067943 -118449094 - B4A SINE B4 -209 83 2 7 822 254 312 34 61 chr6 31067946 31067959 -118449078 - ID_B1 SINE B4 -1 223 145 7 822 330 309 48 24 chr6 31067959 31068085 -118448952 - B1F SINE Alu -11 138 10 8 822 454 284 166 8 chr6 31068292 31068565 -118448472 + L1MB2 LINE L1 5657 5968 -215 8 822 180 0 0 0 chr6 31068748 31068768 -118448269 + (CA)n Simple_repeat Simple_repeat 2 21 0 8 822 715 297 25 121 chr6 31068771 31069085 -118447952 - B4A SINE B4 -8 284 1 8 822 659 175 33 0 chr6 31070675 31070795 -118446242 - B1_Mur2 SINE Alu -23 126 3 8 822 1570 253 63 15 chr6 31070962 31071440 -118445597 - L1MA4 LINE L1 -434 5866 5366 8 822 306 309 10 0 chr6 31071463 31071560 -118445477 + L1M4 LINE L1 4825 4922 -1224 8 822 241 198 184 73 chr6 31071868 31072004 -118445033 + L1M4 LINE L1 5297 5447 -717 8 822 244 338 58 43 chr6 31072992 31073131 -118443906 + ORR1E LTR MaLR 51 191 -168 8 822 306 0 0 0 chr6 31073459 31073493 -118443544 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 822 305 306 116 52 chr6 31073941 31074096 -118442941 + HAL1 LINE L1 876 1040 -1467 8 822 414 0 0 0 chr6 31074471 31074517 -118442520 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 822 234 287 71 66 chr6 31074713 31074896 -118442141 - MER20B DNA MER1_type -30 753 570 9 822 330 263 72 36 chr6 31074938 31075076 -118441961 + RSINE1 SINE B4 4 146 -19 9 822 226 317 109 14 chr6 31075184 31075331 -118441706 - MER20B DNA MER1_type -471 312 152 9 822 1162 103 23 6 chr6 31077420 31077595 -118439442 - URR1B DNA MER1_type 0 225 48 9 822 513 264 91 30 chr6 31077595 31077614 -118439423 + CYRA11_Mm Unknown Y-chromosome 172 377 -240 9 822 21 36 0 0 chr6 31077930 31077958 -118439079 + AT_rich Low_complexity Low_complexity 1 28 0 9 822 233 233 67 0 chr6 31078032 31078092 -118438945 - B3 SINE B2 -152 64 1 9 822 222 37 0 0 chr6 31078775 31078802 -118438235 + (T)n Simple_repeat Simple_repeat 1 27 0 9 822 599 308 13 0 chr6 31079867 31080023 -118437014 - Tigger7 DNA MER2_type -4 2487 2330 9 822 1043 162 50 20 chr6 31081048 31081250 -118435787 + URR1B DNA MER1_type 17 224 -1 9 822 25 0 0 0 chr6 31081298 31081323 -118435714 + AT_rich Low_complexity Low_complexity 1 25 0 1 822 24 0 0 0 chr6 31082211 31082235 -118434802 + AT_rich Low_complexity Low_complexity 1 24 0 1 822 702 255 97 10 chr6 31082872 31083078 -118433959 + ID_B1 SINE B4 1 224 0 1 822 481 241 34 14 chr6 31083473 31083620 -118433417 + L1M3 LINE L1 4627 4776 -1364 1 822 318 326 136 20 chr6 31083757 31083904 -118433133 + RSINE1 SINE B4 2 165 0 1 822 449 267 139 39 chr6 31083930 31084311 -118432726 + L1M3 LINE L1 5000 5441 -742 1 822 303 231 58 0 chr6 31084311 31084415 -118432622 + PB1D9 SINE Alu 2 111 -9 1 822 416 231 94 140 chr6 31084415 31084563 -118432474 + L1M3 LINE L1 5442 5582 -586 1 822 300 27 0 0 chr6 31084587 31084624 -118432413 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 822 491 269 20 46 chr6 31085247 31085399 -118431638 - B4A SINE B4 -142 150 3 1 822 332 60 0 39 chr6 31085429 31085481 -118431556 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 1 822 746 195 144 67 chr6 31086470 31086682 -118430355 - B3 SINE B2 -9 207 7 1 822 771 262 46 71 chr6 31087382 31087662 -118429375 - B4A SINE B4 -17 275 3 1 822 617 274 11 56 chr6 31087826 31088004 -118429033 + B3 SINE B2 47 216 0 1 822 649 176 91 8 chr6 31088188 31088320 -118428717 + B1_Mur2 SINE Alu 2 144 -5 1 822 332 316 26 0 chr6 31089026 31089140 -118427897 + RSINE1 SINE B4 12 128 -37 1 822 472 276 0 0 chr6 31089193 31089291 -118427746 + ID_B1 SINE B4 80 177 -47 1 822 702 229 0 0 chr6 31090140 31090284 -118426753 - RSINE1 SINE B4 -19 146 3 1 822 266 302 73 0 chr6 31090681 31090777 -118426260 - MamRep605 Unknown Unknown -213 663 561 1 822 260 356 75 0 chr6 31093071 31093217 -118423820 - L2a LINE L2 -208 3218 3062 1 822 190 258 30 15 chr6 31093274 31093341 -118423696 - L2a LINE L2 -625 2794 2727 1 822 432 304 8 57 chr6 31094467 31094589 -118422448 + RSINE1 SINE B4 2 117 -48 1 822 1537 52 0 25 chr6 31094632 31094831 -118422206 - B2_Mm2 SINE B2 -1 194 1 1 822 811 186 301 0 chr6 31094893 31095119 -118421918 + Lx7 LINE L1 7074 7367 -329 1 822 560 209 61 88 chr6 31095179 31095326 -118421711 - B1_Mur1 SINE Alu 0 149 7 1 822 366 316 30 90 chr6 31095326 31095346 -118421691 - B4 SINE B4 -69 223 67 1 822 233 137 0 38 chr6 31095395 31095448 -118421589 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 1 822 288 77 0 0 chr6 31097408 31097447 -118419590 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 822 649 196 280 0 chr6 31099909 31100077 -118416960 + B3 SINE B2 1 215 -1 1 822 813 179 14 0 chr6 31100278 31100418 -118416619 - B1_Mur3 SINE Alu -6 143 2 1 822 359 324 6 76 chr6 31100634 31100791 -118416246 - B1F SINE Alu -2 147 2 1 822 2424 148 24 0 chr6 31102956 31103335 -118413702 + ORR1B1 LTR MaLR 7 394 0 1 822 755 178 97 34 chr6 31103522 31103697 -118413340 + B2_Mm2 SINE B2 2 187 -8 1 822 471 113 0 0 chr6 31103981 31104052 -118412985 + (TCCC)n Simple_repeat Simple_repeat 3 73 0 1 822 352 241 0 129 chr6 31104053 31104177 -118412860 - PB1D10 SINE Alu -8 109 2 1 822 194 250 207 35 chr6 31104917 31105004 -118412033 - MIRb SINE MIR -108 160 59 1 822 369 0 0 0 chr6 31105097 31105138 -118411899 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 822 618 221 8 8 chr6 31105214 31105342 -118411695 - ID_B1 SINE B4 -3 221 94 1 822 737 138 0 9 chr6 31106395 31106505 -118410532 + B1_Mur1 SINE Alu 41 149 0 1 822 331 281 60 24 chr6 31106511 31106595 -118410442 + B1F SINE Alu 1 87 -62 1 822 251 262 50 22 chr6 31106620 31106722 -118410315 + PB1D10 SINE Alu 21 127 0 1 822 180 0 0 0 chr6 31106777 31106797 -118410240 + (A)n Simple_repeat Simple_repeat 1 20 0 1 822 220 264 0 19 chr6 31107620 31107674 -118409363 + MIR3 SINE MIR 126 178 -30 1 822 398 272 15 53 chr6 31108403 31108535 -118408502 + RSINE1 SINE B4 2 128 -37 1 822 318 26 0 0 chr6 31108544 31108583 -118408454 + (CATG)n Simple_repeat Simple_repeat 4 42 0 1 822 306 0 0 0 chr6 31108592 31108626 -118408411 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 822 225 231 222 37 chr6 31110642 31110750 -118406287 + Charlie14a DNA MER1_type 1 128 -1036 1 822 739 265 9 23 chr6 31111172 31111392 -118405645 + ID_B1 SINE B4 2 218 -6 1 822 356 285 133 46 chr6 31111646 31111819 -118405218 + MER3 DNA MER1_type 7 194 -15 1 822 380 279 94 14 chr6 31112211 31112349 -118404688 + MER3 DNA MER1_type 5 153 -56 1 822 226 303 39 13 chr6 31112352 31112429 -118404608 - RSINE1 SINE B4 0 165 87 1 822 359 245 103 85 chr6 31112461 31112626 -118404411 - B4A SINE B4 -123 169 2 1 822 267 31 0 0 chr6 31113352 31113384 -118403653 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1 822 264 273 39 0 chr6 31113860 31113937 -118403100 + ID4_ SINE ID 2 81 -2 1 822 237 281 0 0 chr6 31114018 31114082 -118402955 + PB1D10 SINE Alu 42 105 -12 1 822 695 206 76 31 chr6 31114665 31114854 -118402183 + B3A SINE B2 1 187 -8 1 822 252 143 0 0 chr6 31116108 31116150 -118400887 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 822 208 283 19 0 chr6 31116245 31116298 -118400739 + (CGTG)n Simple_repeat Simple_repeat 1 54 0 1 822 344 286 48 11 chr6 31116769 31116924 -118400113 + B3 SINE B2 3 209 -7 1 822 279 0 0 0 chr6 31118113 31118144 -118398893 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1 822 779 184 7 0 chr6 31118144 31118280 -118398757 - B1_Mur2 SINE Alu -12 137 1 1 822 352 288 103 73 chr6 31118379 31118544 -118398493 - B3A SINE B2 -1 197 28 1 822 902 201 60 5 chr6 31118949 31119149 -118397888 + B3 SINE B2 2 212 -4 1 822 244 200 56 97 chr6 31120597 31120669 -118396368 + MER68 LTR ERVL 1 69 -494 1 822 1081 214 107 65 chr6 31120893 31121202 -118395835 + ORR1D1 LTR MaLR 15 336 -38 1 822 1092 225 9 0 chr6 31121243 31121456 -118395581 + ID_B1 SINE B4 9 223 -1 1 822 227 197 68 27 chr6 31121515 31121588 -118395449 + L1MC3 LINE L1 7507 7582 -203 1 822 240 59 0 0 chr6 31122749 31122783 -118394254 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 822 225 242 178 20 chr6 31123210 31123311 -118393726 + L1M5 LINE L1 4553 4669 -1477 1 822 2432 49 3 10 chr6 31123816 31124124 -118392913 - L1_Mus1 LINE L1 -6 6561 6256 1 822 701 265 47 0 chr6 31124169 31124339 -118392698 + B3A SINE B2 3 180 -18 1 822 198 0 0 0 chr6 31124381 31124403 -118392634 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 822 234 0 0 0 chr6 31124416 31124442 -118392595 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 1 822 287 285 56 24 chr6 31124456 31124582 -118392455 + L1M5 LINE L1 5394 5523 -2359 1 822 547 239 191 43 chr6 31124816 31124887 -118392150 + B4A SINE B4 51 141 -151 1 822 276 30 0 0 chr6 31124887 31124920 -118392117 + (GGGGA)n Simple_repeat Simple_repeat 2 34 0 1 822 547 239 191 43 chr6 31124920 31125058 -118391979 + B4A SINE B4 142 291 -1 1 822 301 344 61 6 chr6 31125386 31125550 -118391487 + LTR16A LTR ERVL 259 431 -20 1 822 672 168 79 21 chr6 31126340 31126480 -118390557 + B1_Mur1 SINE Alu 1 148 -1 1 822 404 271 27 27 chr6 31129498 31129608 -118387429 + PB1D10 SINE Alu 7 116 -1 1 822 302 277 137 10 chr6 31129686 31129788 -118387249 + PB1D10 SINE Alu 3 117 0 1 822 245 190 143 25 chr6 31129817 31129936 -118387101 - MER33 DNA MER1_type -53 271 139 1 822 743 158 0 52 chr6 31129950 31130084 -118386953 - B1_Mus2 SINE Alu -20 127 1 1 822 418 274 73 59 chr6 31129970 31130106 -118386931 - B4 SINE B4 -94 198 61 1 822 343 306 41 8 chr6 31130093 31130215 -118386822 - MER33 DNA MER1_type -196 128 3 1 822 250 262 144 85 chr6 31131358 31131546 -118385491 + RLTR20A2 LTR ERVK 20 218 -360 1 822 438 323 0 16 chr6 31131488 31131614 -118385423 + B1F SINE Alu 19 142 -7 1 822 341 339 89 5 chr6 31131939 31132129 -118384908 - BLACKJACK DNA AcHobo -447 2497 2292 1 822 627 221 26 99 chr6 31132858 31133009 -118384028 + B1_Mur2 SINE Alu 9 148 -1 1 822 254 301 34 50 chr6 31133294 31133413 -118383624 + PB1D10 SINE Alu 1 117 0 1 822 522 0 0 0 chr6 31133615 31133673 -118383364 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 822 1900 173 68 8 chr6 31133873 31134228 -118382809 - ORR1C2 LTR MaLR -8 376 1 1 822 493 327 73 19 chr6 31134714 31134920 -118382117 + L4 LINE RTE 1613 1829 -200 1 822 207 355 100 0 chr6 31135347 31135457 -118381580 - L4 LINE RTE -146 1883 1763 1 822 24 0 0 0 chr6 31135875 31135899 -118381138 + AT_rich Low_complexity Low_complexity 1 24 0 1 822 608 259 7 14 chr6 31135910 31136051 -118380986 + B1_Mur1 SINE Alu 5 144 -5 1 822 207 0 0 0 chr6 31136336 31136359 -118380678 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 822 534 332 151 40 chr6 31136441 31136890 -118380147 + LTR87 LTR ERVL? 125 623 -1 1 822 379 283 217 64 chr6 31137085 31137334 -118379703 + B4A SINE B4 1 287 -5 1 822 485 255 204 0 chr6 31137998 31138155 -118378882 - B4 SINE B4 -102 190 2 1 822 1221 29 0 0 chr6 31138798 31138937 -118378100 + B1_Mus1 SINE Alu 5 143 -5 1 822 216 0 0 0 chr6 31140676 31140700 -118376337 + (A)n Simple_repeat Simple_repeat 1 24 0 1 822 189 0 0 0 chr6 31140877 31140898 -118376139 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 822 391 270 21 53 chr6 31141102 31141196 -118375841 + LTR33C LTR ERVL 4 94 -535 1 822 871 319 7 82 chr6 31141952 31142159 -118374878 - B4 SINE B4 -3 289 103 1 822 348 43 0 0 chr6 31142159 31142205 -118374832 + (CCA)n Simple_repeat Simple_repeat 2 47 0 1 822 871 319 7 82 chr6 31142205 31142291 -118374746 - B4 SINE B4 -190 102 18 1 822 220 318 61 0 chr6 31142237 31142303 -118374734 - BC1_Mm scRNA scRNA -82 70 1 1 822 321 26 0 0 chr6 31144524 31144562 -118372475 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 2 822 844 173 0 28 chr6 31144579 31144722 -118372315 + B1_Mus1 SINE Alu 10 148 0 2 822 564 263 88 18 chr6 31144992 31145162 -118371875 - B3A SINE B2 -16 182 1 2 822 298 222 64 43 chr6 31145260 31145354 -118371683 + PB1D7 SINE Alu 18 113 -7 2 822 449 215 54 0 chr6 31145365 31145458 -118371579 + L1MB3 LINE L1 5826 5923 -260 2 822 424 259 159 41 chr6 31147557 31147702 -118369335 + RSINE1 SINE B4 2 163 -2 2 822 847 289 70 30 chr6 31148639 31148939 -118368098 + MLT1F1 LTR MaLR 1 312 -257 2 822 607 256 0 8 chr6 31149298 31149416 -118367621 - B1_Mur1 SINE Alu -10 139 23 2 822 235 239 145 29 chr6 31149565 31149634 -118367403 - ID4_ SINE ID -4 79 3 2 822 1211 108 23 6 chr6 31149730 31149907 -118367130 + B2_Mm2 SINE B2 2 181 -14 2 822 467 339 65 25 chr6 31150217 31150462 -118366575 + L1MC LINE L1 4427 4681 -1465 2 822 248 333 0 0 chr6 31150648 31150729 -118366308 + L1M5 LINE L1 4905 4985 -1161 2 822 681 226 29 26 chr6 31150862 31151034 -118366003 + B1F1 SINE Alu 7 310 -1 2 822 331 212 36 39 chr6 31151280 31151408 -118365629 + L1MC4 LINE L1 7450 7575 -307 2 822 1794 285 44 37 chr6 31151483 31152073 -118364964 + Lx8 LINE L1 6197 6790 -683 2 822 256 288 229 45 chr6 31152103 31152347 -118364690 + Lx8 LINE L1 7185 7473 0 2 822 628 250 13 0 chr6 31152406 31152558 -118364479 + Lx8 LINE L1 7009 7162 -311 2 822 972 65 8 0 chr6 31152764 31152887 -118364150 + B2_Mm2 SINE B2 2 125 -70 2 822 543 286 56 22 chr6 31152995 31153174 -118363863 - MER2 DNA MER2_type -7 338 154 2 822 399 216 76 29 chr6 31153387 31153492 -118363545 + PB1D10 SINE Alu 8 117 0 2 822 387 283 54 84 chr6 31153962 31154128 -118362909 + MLT1A0 LTR MaLR 3 163 -211 2 822 556 311 65 35 chr6 31154197 31154397 -118362640 + MLT1A0 LTR MaLR 146 351 -14 2 822 189 266 45 45 chr6 31155344 31155411 -118361626 + L3b LINE CR1 343 409 -73 2 822 339 235 0 42 chr6 31155831 31155902 -118361135 - ID SINE ID -154 70 3 2 822 216 0 0 0 chr6 31155950 31155974 -118361063 + (A)n Simple_repeat Simple_repeat 1 24 0 2 822 309 109 0 0 chr6 31157151 31157197 -118359840 + (A)n Simple_repeat Simple_repeat 1 46 0 2 822 1199 34 7 20 chr6 31158186 31158335 -118358702 + B1_Mus2 SINE Alu 1 147 0 2 822 791 194 77 62 chr6 31158557 31158665 -118358372 - URR1B DNA MER1_type -7 218 115 2 822 1343 105 11 0 chr6 31158665 31158855 -118358182 - B2_Mm2 SINE B2 -2 193 2 2 822 791 194 77 62 chr6 31158855 31158955 -118358082 - URR1B DNA MER1_type -111 114 7 2 822 249 282 102 131 chr6 31158955 31158982 -118358055 + CYRA11_Mm Unknown Y-chromosome 283 404 -213 2 822 485 270 7 55 chr6 31159132 31159277 -118357760 + B1F SINE Alu 12 149 0 2 822 852 213 51 60 chr6 31160395 31160610 -118356427 + B3 SINE B2 4 216 0 2 822 675 155 105 30 chr6 31160692 31160825 -118356212 - B1_Mur2 SINE Alu -6 143 1 2 822 294 50 0 0 chr6 31161003 31161043 -118355994 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 822 284 307 56 42 chr6 31161084 31161227 -118355810 + MER5A DNA MER1_type 15 159 -30 2 822 239 175 175 0 chr6 31161294 31161357 -118355680 - PB1D10 SINE Alu 0 117 44 2 822 396 192 279 0 chr6 31161807 31161911 -118355126 + B1_Mur2 SINE Alu 2 134 -15 2 822 21 57 0 0 chr6 31162587 31162622 -118354415 + AT_rich Low_complexity Low_complexity 1 35 0 2 822 311 326 51 0 chr6 31162926 31163024 -118354013 - L2b LINE L2 -6 3369 3267 2 822 213 39 0 0 chr6 31163795 31163821 -118353216 + (A)n Simple_repeat Simple_repeat 1 26 0 2 822 867 169 31 66 chr6 31164187 31164383 -118352654 + B2_Mm2 SINE B2 1 189 -6 2 822 1114 174 65 0 chr6 31164459 31164660 -118352377 + URR1B DNA MER1_type 4 217 -8 2 822 196 302 0 31 chr6 31166029 31166094 -118350943 - MER5B DNA MER1_type -112 66 4 2 822 21 36 0 0 chr6 31166496 31166524 -118350513 + GC_rich Low_complexity Low_complexity 1 28 0 2 822 253 250 0 0 chr6 31167549 31167605 -118349432 + C-rich Low_complexity Low_complexity 1 56 0 2 822 233 229 0 0 chr6 31168526 31168574 -118348463 + (CAG)n Simple_repeat Simple_repeat 3 50 0 2 822 375 23 0 0 chr6 31171376 31171420 -118345617 + (TTA)n Simple_repeat Simple_repeat 3 46 0 2 822 942 194 85 25 chr6 31172625 31172826 -118344211 - B3 SINE B2 -3 213 1 2 822 192 300 0 62 chr6 31173588 31173652 -118343385 + L2a LINE L2 3367 3426 0 2 822 565 276 6 44 chr6 31173750 31173909 -118343128 - B3 SINE B2 -11 205 53 2 822 256 272 109 14 chr6 31174582 31174720 -118342317 - L2 LINE L2 -1367 2052 1902 2 822 443 132 46 19 chr6 31174851 31174959 -118342078 + GA-rich Low_complexity Low_complexity 3 113 0 2 822 219 369 69 25 chr6 31174995 31175198 -118341839 + L2 LINE L2 2498 2709 -710 2 822 315 0 0 0 chr6 31175223 31175258 -118341779 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2 822 366 274 31 21 chr6 31175270 31175367 -118341670 - PB1D10 SINE Alu -51 98 1 2 822 1337 167 4 13 chr6 31175373 31175598 -118341439 - URR1B DNA MER1_type 0 225 3 2 822 537 267 0 8 chr6 31176171 31176288 -118340749 + PB1D10 SINE Alu 1 116 -1 2 822 330 337 0 0 chr6 31176613 31176699 -118340338 + RSINE1 SINE B4 2 87 -78 2 822 239 334 44 24 chr6 31177068 31177286 -118339751 + L1M5 LINE L1 5549 5776 -348 2 822 4748 146 133 31 chr6 31177346 31178163 -118338874 - RLTR25B LTR ERVK 0 1028 117 2 822 363 23 0 0 chr6 31178163 31178207 -118338830 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 822 4748 146 133 31 chr6 31178207 31178322 -118338715 - RLTR25B LTR ERVK -912 116 1 2 822 184 295 24 82 chr6 31178773 31178858 -118338179 - L2 LINE L2 -974 2445 2366 2 822 197 65 0 31 chr6 31178905 31178937 -118338100 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 2 822 186 133 0 0 chr6 31179326 31179356 -118337681 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 822 257 325 144 96 chr6 31179823 31180010 -118337027 + ID_B1 SINE B4 8 203 -21 2 822 502 269 99 46 chr6 31180072 31180224 -118336813 + B3A SINE B2 1 160 -38 2 822 396 0 0 0 chr6 31180228 31180272 -118336765 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 822 675 75 0 0 chr6 31180272 31180365 -118336672 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 2 822 476 284 73 15 chr6 31180470 31180594 -118336443 - MER58B DNA MER1_type 0 341 210 2 822 339 242 9 95 chr6 31180594 31180699 -118336338 + PB1D10 SINE Alu 1 96 -21 2 822 616 324 24 10 chr6 31180741 31180947 -118336090 - MER58B DNA MER1_type -132 209 1 2 822 1695 214 50 30 chr6 31181865 31182227 -118334810 - ORR1D1 LTR MaLR -5 369 1 2 822 275 260 0 0 chr6 31182227 31182304 -118334733 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 822 351 0 0 0 chr6 31182423 31182462 -118334575 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 822 447 329 12 65 chr6 31182488 31182657 -118334380 - B4A SINE B4 -125 167 8 2 822 797 204 7 13 chr6 31182730 31182879 -118334158 - B1_Mur1 SINE Alu 0 149 2 2 822 484 298 57 6 chr6 31183130 31183289 -118333748 + MIRb SINE MIR 71 237 -31 2 822 562 292 128 28 chr6 31184134 31184423 -118332614 + L3 LINE CR1 2014 2331 -2158 2 822 729 118 0 0 chr6 31184646 31184765 -118332272 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 2 822 1175 62 7 0 chr6 31184768 31184913 -118332124 - B1_Mus1 SINE Alu -1 147 2 2 822 783 223 156 30 chr6 31185007 31185206 -118331831 + ID_B1 SINE B4 1 224 0 2 822 539 196 35 35 chr6 31185259 31185375 -118331662 - Tigger7 DNA MER2_type -39 2452 2337 2 822 336 274 24 0 chr6 31185398 31185482 -118331555 - Tigger7 DNA MER2_type -2373 118 33 2 822 195 69 0 0 chr6 31185625 31185654 -118331383 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2 822 240 222 15 45 chr6 31185935 31186001 -118331036 - ID_B1 SINE B4 -62 162 99 2 822 553 192 0 48 chr6 31186048 31186152 -118330885 - PB1D7 SINE Alu 0 120 22 2 822 384 22 0 0 chr6 31186233 31186278 -118330759 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 822 726 277 83 15 chr6 31186302 31186507 -118330530 - B4 SINE B4 -6 286 68 2 822 347 189 12 134 chr6 31186502 31186673 -118330364 + RMER17C LTR ERVK 126 275 -135 2 822 374 169 99 0 chr6 31186686 31186757 -118330280 - B4 SINE B4 -213 79 2 2 822 396 0 0 0 chr6 31187232 31187276 -118329761 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 822 234 0 0 0 chr6 31187361 31187387 -118329650 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 822 378 0 0 0 chr6 31187387 31187428 -118329609 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 822 270 316 136 48 chr6 31188215 31188421 -118328616 + MLT1K LTR MaLR 170 393 -202 2 822 532 250 0 51 chr6 31188736 31188854 -118328183 + PB1D10 SINE Alu 1 112 -5 2 822 238 270 97 18 chr6 31188925 31189038 -118327999 + L1M5 LINE L1 5633 5754 -370 2 822 336 64 0 0 chr6 31189154 31189201 -118327836 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 2 822 633 162 30 0 chr6 31189203 31189302 -118327735 - B1_Mur2 SINE Alu -16 133 32 2 822 234 267 182 45 chr6 31189222 31189332 -118327705 - B4 SINE B4 -89 203 79 2 822 1235 83 0 16 chr6 31189747 31189930 -118327107 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 822 278 315 35 18 chr6 31189979 31190092 -118326945 - PB1D10 SINE Alu -1 116 2 2 822 189 109 43 21 chr6 31190380 31190427 -118326610 + CT-rich Low_complexity Low_complexity 1 48 0 2 822 371 298 113 28 chr6 31190648 31190847 -118326190 - MIRb SINE MIR -24 244 26 2 822 348 88 0 0 chr6 31191152 31191209 -118325828 + (A)n Simple_repeat Simple_repeat 1 57 0 3 822 855 128 251 17 chr6 31192772 31192947 -118324090 - B3 SINE B2 0 216 1 3 822 549 245 49 28 chr6 31193676 31193819 -118323218 + B1F SINE Alu 3 148 -1 3 822 201 74 0 0 chr6 31193840 31193867 -118323170 + (GAA)n Simple_repeat Simple_repeat 3 29 0 3 822 238 200 0 20 chr6 31193915 31193966 -118323071 + GA-rich Low_complexity Low_complexity 3 52 0 3 822 300 172 0 0 chr6 31194003 31194061 -118322976 + GA-rich Low_complexity Low_complexity 3 60 0 3 822 197 294 63 184 chr6 31194132 31194448 -118322589 - L2 LINE L2 -1211 2208 1931 3 823 366 305 26 0 chr6 31195580 31195734 -118321303 + (TGAG)n Simple_repeat Simple_repeat 1 158 0 3 823 271 284 0 100 chr6 31196718 31196808 -118320229 + RSINE1 SINE B4 16 96 -69 3 823 207 69 0 0 chr6 31196916 31196945 -118320092 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 823 291 121 0 0 chr6 31196964 31197022 -118320015 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 823 279 0 0 0 chr6 31197023 31197054 -118319983 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 3 823 1121 76 0 0 chr6 31197393 31197538 -118319499 + B1_Mus1 SINE Alu 4 148 0 3 823 1386 267 79 20 chr6 31198246 31198640 -118318397 - MTD LTR MaLR 0 419 3 3 823 270 73 0 0 chr6 31199262 31199303 -118317734 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 3 823 652 277 163 4 chr6 31199321 31199560 -118317477 + B4A SINE B4 2 278 -14 3 823 180 77 0 0 chr6 31199617 31199643 -118317394 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 823 181 74 0 36 chr6 31200282 31200310 -118316727 - L2 LINE L2 -2632 787 761 3 823 1354 212 94 21 chr6 31200392 31200720 -118316317 - MTEb LTR MaLR -20 359 8 3 823 358 281 103 17 chr6 31200731 31200847 -118316190 + L2a LINE L2 3299 3424 -2 3 823 904 321 115 37 chr6 31200927 31201502 -118315535 + L3 LINE CR1 3523 4121 -368 3 823 324 0 0 0 chr6 31201502 31201538 -118315499 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 823 904 321 115 37 chr6 31201538 31201605 -118315432 + L3 LINE CR1 4122 4214 -275 3 823 284 286 47 12 chr6 31202173 31202258 -118314779 - MIR SINE MIR -120 142 55 3 823 432 0 0 0 chr6 31202323 31202371 -118314666 + (CCA)n Simple_repeat Simple_repeat 1 48 0 3 823 1201 180 9 13 chr6 31202580 31202805 -118314232 - URR1A DNA MER1_type -2 224 1 3 823 198 0 0 0 chr6 31203380 31203402 -118313635 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 3 823 361 263 13 0 chr6 31204629 31204705 -118312332 - ID4_ SINE ID -5 78 2 3 823 811 235 5 37 chr6 31204738 31204928 -118312109 - B3A SINE B2 0 198 15 3 823 21 36 0 0 chr6 31206085 31206113 -118310924 + AT_rich Low_complexity Low_complexity 1 28 0 3 823 245 346 12 12 chr6 31206137 31206219 -118310818 + ID4_ SINE ID 2 83 0 3 823 261 0 0 0 chr6 31206361 31206390 -118310647 + (A)n Simple_repeat Simple_repeat 1 29 0 3 823 534 214 0 0 chr6 31206393 31206491 -118310546 - PB1D7 SINE Alu -22 98 1 3 823 200 236 27 27 chr6 31206515 31206589 -118310448 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 823 376 263 115 0 chr6 31206788 31206944 -118310093 - L1MC5 LINE L1 -176 7785 7612 3 823 983 66 22 13 chr6 31207105 31207336 -118309701 + (CA)n Simple_repeat Simple_repeat 1 232 0 3 823 244 290 39 29 chr6 31207393 31207496 -118309541 + L1MC LINE L1 5779 5882 -2000 3 823 349 294 58 16 chr6 31207505 31207626 -118309411 + PB1 SINE Alu 2 127 0 3 823 1473 184 233 86 chr6 31207849 31208262 -118308775 + MT2A LTR ERVL 1 464 -69 3 823 599 26 13 0 chr6 31208262 31208339 -118308698 + (TCCC)n Simple_repeat Simple_repeat 1 78 0 3 823 468 0 0 0 chr6 31208339 31208391 -118308646 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 823 1473 184 233 86 chr6 31208391 31208440 -118308597 + MT2A LTR ERVL 465 531 -2 3 823 1060 116 0 0 chr6 31208678 31208825 -118308212 + B1_Mus1 SINE Alu 2 148 0 3 823 435 307 48 105 chr6 31208967 31209020 -118308017 - B4A SINE B4 0 292 241 3 823 710 239 57 42 chr6 31209020 31209212 -118307825 - B3A SINE B2 -1 197 3 3 823 435 307 48 105 chr6 31209212 31209239 -118307798 - B4A SINE B4 -52 240 128 3 823 755 210 29 0 chr6 31209239 31209377 -118307660 - B1_Mur4 SINE Alu -7 143 2 3 823 1055 262 4 0 chr6 31209377 31209604 -118307433 - B4A SINE B4 -60 232 5 3 823 685 225 0 53 chr6 31209620 31209770 -118307267 - B1_Mur2 SINE Alu -7 142 1 3 823 971 244 40 0 chr6 31209837 31210038 -118306999 - ID_B1 SINE B4 -14 210 2 3 823 241 318 0 0 chr6 31210765 31210831 -118306206 - MIR SINE MIR -117 145 80 3 823 609 297 50 86 chr6 31211302 31211604 -118305433 + B4 SINE B4 2 292 0 3 823 297 0 0 0 chr6 31211609 31211642 -118305395 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 823 345 267 73 24 chr6 31211708 31211831 -118305206 + MIRb SINE MIR 132 260 -8 3 823 227 279 25 12 chr6 31212419 31212499 -118304538 + ID4 SINE ID 3 83 0 3 823 864 149 0 0 chr6 31213152 31213286 -118303751 - B1_Mus1 SINE Alu -13 135 2 3 823 360 0 0 0 chr6 31213293 31213333 -118303704 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 823 699 153 18 0 chr6 31213333 31213444 -118303593 - B1_Mus1 SINE Alu -10 138 26 3 823 575 271 235 0 chr6 31213971 31214321 -118302716 - L1MB5 LINE L1 -33 6141 5708 3 823 515 200 62 39 chr6 31214452 31214463 -118302574 - B1F SINE Alu -2 147 140 3 823 216 0 0 0 chr6 31214463 31214487 -118302550 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 823 614 228 9 0 chr6 31214487 31214601 -118302436 - ID_B1 SINE B4 -10 214 100 3 823 494 206 11 59 chr6 31214772 31214954 -118302083 + MTD LTR MaLR 102 268 -153 3 823 799 258 13 0 chr6 31215127 31215286 -118301751 + ID_B1 SINE B4 2 162 -62 3 823 476 241 39 78 chr6 31215300 31215453 -118301584 + MER33 DNA MER1_type 174 320 -4 3 823 400 264 98 54 chr6 31215465 31215649 -118301388 - MIR SINE MIR -71 197 6 3 823 4428 61 19 37 chr6 31215866 31216460 -118300577 - L1_Mus2 LINE L1 0 6566 5984 3 823 346 64 0 0 chr6 31216460 31216507 -118300530 + MusHAL1 LINE L1 1084 1130 -1582 3 823 381 93 0 0 chr6 31216766 31216820 -118300217 + (CACGC)n Simple_repeat Simple_repeat 3 56 0 3 823 1935 211 36 13 chr6 31218464 31218475 -118298562 + MTD LTR MaLR 7 17 -402 3 823 216 0 0 0 chr6 31218475 31218499 -118298538 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 3 823 1935 211 36 13 chr6 31218499 31218876 -118298161 + MTD LTR MaLR 18 404 -15 3 823 1121 118 0 6 chr6 31219488 31219667 -118297370 + (TTC)n Simple_repeat Simple_repeat 3 180 0 3 823 994 140 6 6 chr6 31219667 31219846 -118297191 + CT-rich Low_complexity Low_complexity 1 180 0 3 823 288 260 13 13 chr6 31219861 31219939 -118297098 - ID4_ SINE ID -3 80 3 3 823 459 0 0 0 chr6 31219947 31219998 -118297039 + (TTTC)n Simple_repeat Simple_repeat 1 51 0 3 823 459 265 0 49 chr6 31219999 31220122 -118296915 - PB1D10 SINE Alu 0 117 1 3 823 604 127 9 9 chr6 31220264 31220375 -118296662 + (TA)n Simple_repeat Simple_repeat 1 111 0 3 823 229 312 72 26 chr6 31220453 31220647 -118296390 + L1M5 LINE L1 5576 5778 -346 3 823 1035 256 13 75 chr6 31220902 31221210 -118295827 + B4 SINE B4 4 292 0 3 823 1315 183 158 18 chr6 31221223 31221551 -118295486 + ORR1D1 LTR MaLR 1 374 0 3 823 1007 234 18 14 chr6 31222033 31222254 -118294783 - ID_B1 SINE B4 -1 223 2 3 823 304 282 7 157 chr6 31222964 31223111 -118293926 - B4 SINE B4 -118 174 50 3 823 747 269 94 30 chr6 31223808 31224073 -118292964 + B4 SINE B4 3 284 -8 3 823 314 123 18 0 chr6 31225127 31225184 -118291853 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 3 823 565 178 20 10 chr6 31225320 31225422 -118291615 - B1_Mur1 SINE Alu -7 142 40 3 823 258 306 0 0 chr6 31225424 31225509 -118291528 + CT-rich Low_complexity Low_complexity 2 86 0 3 823 417 233 46 55 chr6 31225902 31226011 -118291026 + PB1D10 SINE Alu 10 117 0 3 823 414 0 0 0 chr6 31226324 31226370 -118290667 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 823 180 163 0 0 chr6 31226538 31226581 -118290456 + T-rich Low_complexity Low_complexity 1 43 0 3 823 421 222 0 108 chr6 31226662 31226773 -118290264 - PB1D7 SINE Alu -5 115 17 3 823 28 0 0 0 chr6 31227170 31227198 -118289839 + AT_rich Low_complexity Low_complexity 1 28 0 3 823 375 292 61 17 chr6 31227400 31227515 -118289522 - PB1 SINE Alu -7 120 1 3 823 265 266 38 0 chr6 31228979 31229058 -118287979 + ID2 SINE ID 2 83 0 3 823 396 202 31 31 chr6 31229858 31229955 -118287082 + PB1D10 SINE Alu 21 117 0 3 823 389 249 112 38 chr6 31230090 31230319 -118286718 - MTEb LTR MaLR 0 379 120 3 823 609 40 0 0 chr6 31230349 31230425 -118286612 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 823 288 0 0 0 chr6 31230425 31230456 -118286581 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 823 618 187 56 0 chr6 31230469 31230576 -118286461 - B1_Mur1 SINE Alu -36 113 1 3 823 501 32 0 0 chr6 31230604 31230667 -118286370 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 823 469 309 0 35 chr6 31230701 31230842 -118286195 - RSINE1 SINE B4 -29 136 1 3 823 341 328 47 61 chr6 31231860 31231948 -118285089 + ID_B1 SINE B4 4 214 -10 3 823 459 262 40 0 chr6 31231948 31232074 -118284963 + B1_Mur1 SINE Alu 9 139 -10 3 823 292 223 204 0 chr6 31233265 31233368 -118283669 - MIRc SINE MIR -40 228 105 3 823 233 167 0 20 chr6 31233943 31233992 -118283045 + RMER30 DNA MER1_type 7 54 -148 3 823 235 306 54 27 chr6 31234688 31234799 -118282238 + MIRb SINE MIR 68 181 -87 4 823 398 308 31 25 chr6 31235237 31235400 -118281637 - L2c LINE L2 -231 3156 2993 4 823 225 273 0 0 chr6 31235617 31235683 -118281354 + T-rich Low_complexity Low_complexity 1 66 0 4 823 954 234 9 35 chr6 31235683 31235913 -118281124 - ID_B1 SINE B4 0 224 1 4 823 620 304 70 25 chr6 31236084 31236398 -118280639 - MLT1H LTR MaLR -210 339 12 4 823 345 75 0 0 chr6 31236933 31236986 -118280051 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 823 338 0 24 0 chr6 31236995 31237037 -118280000 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 823 289 238 0 16 chr6 31237055 31237119 -118279918 - B4A SINE B4 -3 289 227 4 823 283 42 41 20 chr6 31237123 31237172 -118279865 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 823 913 261 23 0 chr6 31237177 31237395 -118279642 - B4A SINE B4 -68 224 2 4 823 475 228 0 0 chr6 31238095 31238187 -118278850 + ID_B1 SINE B4 79 170 -54 4 823 387 0 0 0 chr6 31238190 31238233 -118278804 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 823 495 0 0 0 chr6 31238233 31238287 -118278750 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 823 216 0 0 0 chr6 31238521 31238545 -118278492 + (TCTCC)n Simple_repeat Simple_repeat 4 27 0 4 823 284 246 24 88 chr6 31239194 31239319 -118277718 - MER5A1 DNA MER1_type -48 118 2 4 823 205 167 55 18 chr6 31239758 31239813 -118277224 + GA-rich Low_complexity Low_complexity 3 59 0 4 823 216 97 0 0 chr6 31240319 31240350 -118276687 + (TTA)n Simple_repeat Simple_repeat 1 31 0 4 823 827 284 34 19 chr6 31240380 31240649 -118276388 - L1MB5 LINE L1 -9 6165 5893 4 823 22 0 0 0 chr6 31241558 31241580 -118275457 + AT_rich Low_complexity Low_complexity 1 22 0 4 823 1425 274 71 62 chr6 31242503 31243037 -118274000 - Tigger7 DNA MER2_type -1884 607 69 4 823 429 188 0 0 chr6 31243568 31243653 -118273384 + GA-rich Low_complexity Low_complexity 1 85 0 4 823 1877 192 37 5 chr6 31244349 31244752 -118272285 + RMER5 LTR ERV1 89 504 -30 4 823 264 30 0 0 chr6 31244865 31244898 -118272139 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 823 340 326 42 7 chr6 31244903 31245045 -118271992 - RSINE1 SINE B4 -16 149 3 4 823 216 0 0 0 chr6 31245051 31245075 -118271962 + (ACTG)n Simple_repeat Simple_repeat 3 26 0 4 823 303 189 12 129 chr6 31245075 31245160 -118271877 - PB1D10 SINE Alu -15 102 28 4 823 333 0 0 0 chr6 31245659 31245696 -118271341 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 823 473 209 226 6 chr6 31245696 31245855 -118271182 - B4A SINE B4 -58 234 41 4 823 478 292 72 102 chr6 31246706 31246738 -118270299 + ORR1E LTR MaLR 1 30 -329 4 823 447 19 0 0 chr6 31246738 31246790 -118270247 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 823 478 292 72 102 chr6 31246790 31247062 -118269975 + ORR1E LTR MaLR 31 296 -63 4 823 518 248 35 0 chr6 31247071 31247212 -118269825 + B1F SINE Alu 4 149 0 4 823 932 163 14 0 chr6 31247215 31247362 -118269675 + B1_Mur3 SINE Alu 1 149 0 4 823 636 244 180 0 chr6 31247423 31247595 -118269442 + B3 SINE B2 1 203 -13 4 823 251 298 24 12 chr6 31247634 31247719 -118269318 + GA-rich Low_complexity Low_complexity 2 87 0 4 823 3297 181 28 27 chr6 31247925 31248635 -118268402 - RMER1B Other Other -4 1062 167 4 823 540 254 79 6 chr6 31249227 31249405 -118267632 - MER20 DNA MER1_type 0 219 29 4 823 201 311 13 13 chr6 31249450 31249525 -118267512 + L2c LINE L2 3262 3336 -51 4 823 433 253 216 16 chr6 31249813 31249998 -118267039 - B4 SINE B4 -70 222 1 4 823 437 298 42 60 chr6 31251834 31252237 -118264800 - MLT1E2 LTR MaLR -4 623 157 4 823 250 289 79 0 chr6 31252714 31252790 -118264247 - ID4_ SINE ID -1 82 1 4 823 1154 121 10 40 chr6 31253238 31253436 -118263601 + B2_Mm2 SINE B2 2 193 -2 4 823 207 100 0 0 chr6 31254015 31254045 -118262992 + (CTCA)n Simple_repeat Simple_repeat 1 30 0 4 823 231 36 0 0 chr6 31254140 31254168 -118262869 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 823 289 226 164 19 chr6 31254280 31254384 -118262653 - MTE2a LTR MaLR -55 324 206 4 823 592 179 0 0 chr6 31254423 31254529 -118262508 + B3A SINE B2 32 137 -61 4 823 615 244 89 53 chr6 31254971 31255161 -118261876 - ID_B1 SINE B4 -20 204 8 4 823 189 351 14 0 chr6 31255236 31255310 -118261727 - L2 LINE L2 -933 2486 2412 4 823 462 294 28 17 chr6 31255499 31255679 -118261358 + B3A SINE B2 1 182 -16 4 823 315 0 0 0 chr6 31256303 31256338 -118260699 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 823 228 135 0 0 chr6 31256670 31256707 -118260330 + (T)n Simple_repeat Simple_repeat 1 37 0 4 823 405 0 0 0 chr6 31257402 31257447 -118259590 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 823 24 0 0 0 chr6 31257739 31257763 -118259274 + AT_rich Low_complexity Low_complexity 1 24 0 4 823 377 312 120 6 chr6 31258108 31258266 -118258771 - MER20 DNA MER1_type -42 177 2 4 823 997 110 177 0 chr6 31259228 31259392 -118257645 + B2_Mm2 SINE B2 2 194 -1 4 823 459 0 0 0 chr6 31259712 31259763 -118257274 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 823 390 317 41 0 chr6 31259763 31259886 -118257151 - RSINE1 SINE B4 -37 128 1 4 823 420 286 9 0 chr6 31260093 31260198 -118256839 - PB1D10 SINE Alu -11 106 1 4 823 257 295 12 60 chr6 31260125 31260208 -118256829 - B4A SINE B4 -138 154 76 4 823 270 0 0 0 chr6 31260788 31260818 -118256219 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 823 869 219 72 123 chr6 31261164 31261554 -118255483 + ORR1D2 LTR MaLR 1 370 0 4 823 1201 210 0 0 chr6 31262258 31262472 -118254565 + B3 SINE B2 2 215 -1 4 823 538 257 102 38 chr6 31262544 31262730 -118254307 + B3A SINE B2 1 198 0 4 823 268 227 89 40 chr6 31262984 31263085 -118253952 + MLT1A1 LTR MaLR 303 408 0 4 823 1179 68 0 0 chr6 31263152 31263299 -118253738 + B1_Mus1 SINE Alu 2 148 0 4 823 582 114 0 0 chr6 31263299 31263387 -118253650 + (A)n Simple_repeat Simple_repeat 1 88 0 4 823 264 262 66 0 chr6 31263398 31263459 -118253578 + PB1D10 SINE Alu 45 109 -40 4 823 552 116 0 0 chr6 31263480 31263566 -118253471 + (GGA)n Simple_repeat Simple_repeat 1 86 0 4 823 679 224 74 32 chr6 31263617 31263834 -118253203 + L1MB2 LINE L1 5801 6026 -145 4 823 213 321 0 0 chr6 31263884 31263937 -118253100 + MIRm SINE MIR 211 263 -13 4 823 1346 206 24 131 chr6 31264887 31265306 -118251731 - MTE2a LTR MaLR -5 374 1 4 823 193 259 30 164 chr6 31265316 31265450 -118251587 - MIR SINE MIR -29 233 118 4 823 682 275 86 28 chr6 31266477 31266794 -118250243 - MLT1A0 LTR MaLR -1 389 23 4 823 581 213 37 0 chr6 31266862 31266970 -118250067 - B1_Mur1 SINE Alu -21 128 17 4 823 321 236 0 122 chr6 31267322 31267480 -118249557 + MLT1A0 LTR MaLR 96 233 -141 4 823 286 42 20 20 chr6 31268265 31268314 -118248723 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 823 298 254 56 0 chr6 31269005 31269076 -118247961 - ID4_ SINE ID -1 82 8 4 823 695 211 7 33 chr6 31270099 31270251 -118246786 - B1_Mur1 SINE Alu -1 148 1 4 823 669 47 28 0 chr6 31270975 31271081 -118245956 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 823 764 228 23 23 chr6 31272433 31272608 -118244429 - B3 SINE B2 -4 212 38 4 823 186 43 0 0 chr6 31272621 31272644 -118244393 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 823 266 240 116 65 chr6 31272651 31272789 -118244248 + B3A SINE B2 3 147 -51 4 823 635 315 52 58 chr6 31273381 31273725 -118243312 + MER2 DNA MER2_type 4 345 0 4 823 327 49 0 0 chr6 31274380 31274421 -118242616 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 823 185 244 191 24 chr6 31275743 31275827 -118241210 - MIR3 SINE MIR -12 196 99 4 823 277 315 88 44 chr6 31276066 31276338 -118240699 + L3 LINE CR1 4017 4300 -189 4 823 268 284 94 94 chr6 31276461 31276632 -118240405 - L2b LINE L2 -20 3355 3185 4 823 267 339 76 41 chr6 31276795 31276992 -118240045 - MLT1J1 LTR MaLR -168 276 73 4 823 234 0 0 0 chr6 31277238 31277264 -118239773 + (T)n Simple_repeat Simple_repeat 1 26 0 4 823 557 177 35 9 chr6 31277332 31277446 -118239591 - L1MA8 LINE L1 -29 6262 6146 4 823 421 0 0 0 chr6 31277593 31277638 -118239399 - L1_Mus4 LINE L1 -464 6172 6128 4 823 2360 70 60 9 chr6 31277638 31277972 -118239065 + L1_Mus4 LINE L1 6286 6636 0 4 823 252 237 26 26 chr6 31278570 31278648 -118238389 - MTEb LTR MaLR 0 379 302 4 823 1843 131 109 9 chr6 31278862 31278975 -118238062 - RMER1B Other Other -1 1065 950 4 823 333 82 0 0 chr6 31278975 31279024 -118238013 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 4 823 1843 131 109 9 chr6 31279024 31279248 -118237789 - RMER1B Other Other -117 949 696 4 823 201 315 44 11 chr6 31279476 31279566 -118237471 - MIRc SINE MIR -43 225 133 4 823 24 0 0 0 chr6 31279683 31279707 -118237330 + AT_rich Low_complexity Low_complexity 1 24 0 4 823 651 97 0 0 chr6 31279771 31279864 -118237173 - B1_Mus2 SINE Alu -8 139 47 4 823 280 190 0 79 chr6 31279812 31279875 -118237162 - RLTR25A LTR ERVK -531 572 515 4 823 672 301 103 33 chr6 31279956 31280227 -118236810 + B4 SINE B4 1 290 -2 4 823 899 161 5 0 chr6 31281963 31282187 -118234850 + GA-rich Low_complexity Low_complexity 1 225 0 4 823 542 16 0 0 chr6 31282187 31282250 -118234787 + (GAA)n Simple_repeat Simple_repeat 2 64 0 4 823 738 230 7 0 chr6 31282734 31282882 -118234155 - B1_Mur1 SINE Alu 0 149 1 5 823 22 35 0 0 chr6 31284042 31284071 -118232966 + AT_rich Low_complexity Low_complexity 1 29 0 5 823 21 36 0 0 chr6 31284118 31284146 -118232891 + AT_rich Low_complexity Low_complexity 1 28 0 5 823 351 0 0 0 chr6 31284213 31284252 -118232785 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 823 258 204 0 0 chr6 31284320 31284369 -118232668 + PB1D7 SINE Alu 65 113 -7 5 823 758 312 70 4 chr6 31284983 31285253 -118231784 - B4A SINE B4 -2 290 3 5 823 413 261 52 7 chr6 31285265 31285400 -118231637 - B1F SINE Alu -8 141 1 5 823 270 0 0 0 chr6 31285594 31285624 -118231413 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 823 279 109 0 21 chr6 31285825 31285872 -118231165 - MIRb SINE MIR -36 232 187 5 823 1045 240 67 102 chr6 31287070 31287396 -118229641 + ORR1D2 LTR MaLR 12 326 -44 5 823 937 173 191 22 chr6 31287396 31287579 -118229458 - B3 SINE B2 -2 214 1 5 823 1045 240 67 102 chr6 31287579 31287624 -118229413 + ORR1D2 LTR MaLR 327 370 0 5 823 763 260 31 108 chr6 31287624 31287982 -118229055 + MTE2a LTR MaLR 64 405 -14 5 823 270 0 0 0 chr6 31288260 31288290 -118228747 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 823 22 0 0 0 chr6 31288440 31288462 -118228575 + AT_rich Low_complexity Low_complexity 1 22 0 5 823 528 286 4 125 chr6 31288771 31289019 -118228018 - L1MA5 LINE L1 -6 6294 6077 5 823 306 0 0 0 chr6 31290268 31290302 -118226735 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 823 629 211 0 30 chr6 31290304 31290436 -118226601 - B1_Mus1 SINE Alu -13 135 8 5 823 1118 215 165 6 chr6 31291032 31291359 -118225678 + MTEb LTR MaLR 1 379 0 5 823 622 229 60 12 chr6 31291727 31291895 -118225142 - Lx8 LINE L1 -2 7471 7296 5 823 552 267 73 9 chr6 31292121 31292340 -118224697 - Lx9 LINE L1 -28 7616 7384 5 823 730 233 82 10 chr6 31292417 31292612 -118224425 - MTE2b LTR MaLR -170 209 1 5 823 2180 316 140 48 chr6 31293113 31294674 -118222363 + L1M4b LINE L1 11 1714 -5620 5 823 676 183 38 15 chr6 31294690 31294823 -118222214 - B1_Mur2 SINE Alu -2 147 12 5 823 433 255 38 63 chr6 31294697 31294856 -118222181 - ID_B1 SINE B4 -9 215 61 5 823 232 200 0 0 chr6 31295139 31295179 -118221858 + RMER30 DNA MER1_type 12 51 -151 5 823 198 0 0 0 chr6 31295795 31295817 -118221220 + (TC)n Simple_repeat Simple_repeat 1 22 0 5 823 266 270 134 9 chr6 31296240 31296352 -118220685 - L1MB3 LINE L1 -1 6182 6057 5 823 351 303 74 0 chr6 31296554 31296676 -118220361 - L1MC5 LINE L1 -519 7442 7312 5 823 282 342 0 0 chr6 31296954 31297027 -118220010 + ID_B1 SINE B4 81 153 -71 5 823 252 366 0 24 chr6 31296955 31297039 -118219998 + PB1D10 SINE Alu 1 82 -35 5 823 225 0 0 0 chr6 31297059 31297084 -118219953 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 823 237 291 0 0 chr6 31297110 31297165 -118219872 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 823 207 0 0 0 chr6 31298097 31298120 -118218917 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 823 328 340 38 0 chr6 31298857 31298963 -118218074 + PB1D10 SINE Alu 3 112 -5 5 823 980 219 27 44 chr6 31298974 31299199 -118217838 + ID_B1 SINE B4 2 222 -2 5 823 282 156 0 0 chr6 31299209 31299273 -118217764 + (CCA)n Simple_repeat Simple_repeat 1 64 0 5 823 284 345 8 42 chr6 31299618 31299722 -118217315 + PB1D10 SINE Alu 3 107 -10 5 823 549 0 0 0 chr6 31299722 31299783 -118217254 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 5 823 284 345 8 42 chr6 31299783 31299796 -118217241 + PB1D10 SINE Alu 108 116 -1 5 823 790 165 12 6 chr6 31299811 31299958 -118217079 + GA-rich Low_complexity Low_complexity 4 152 0 5 823 1179 107 0 0 chr6 31299958 31300136 -118216901 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 823 790 194 3 1 chr6 31300136 31300207 -118216830 + polypurine Low_complexity Low_complexity 1 71 0 5 823 303 225 0 16 chr6 31300583 31300675 -118216362 - B1F SINE Alu -22 98 14 5 823 1010 200 40 10 chr6 31301815 31302017 -118215020 - B3 SINE B2 -6 210 3 5 823 273 189 0 0 chr6 31302230 31302283 -118214754 - MLT1J2 LTR MaLR -138 310 258 5 823 1354 105 16 0 chr6 31303028 31303218 -118213819 + B2_Mm2 SINE B2 1 193 -2 5 823 306 289 0 24 chr6 31303430 31303515 -118213522 + PB1D7 SINE Alu 38 120 0 5 823 283 296 73 18 chr6 31303915 31304025 -118213012 - L2a LINE L2 0 3426 3311 5 823 1256 263 67 6 chr6 31304394 31304723 -118212314 - MTEa LTR MaLR -23 356 8 5 823 2559 274 87 16 chr6 31304731 31305499 -118211538 - MTEa-int LTR MaLR -2 1578 756 5 823 1381 232 26 24 chr6 31305479 31305819 -118211218 - MTEa-int LTR MaLR -1239 341 1 5 823 1104 241 126 29 chr6 31305821 31306163 -118210874 - MTEa LTR MaLR -2 377 3 5 823 534 231 41 0 chr6 31306165 31306286 -118210751 + B1F SINE Alu 18 143 -6 5 823 351 113 0 0 chr6 31306297 31306350 -118210687 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 5 823 526 242 73 0 chr6 31308135 31308259 -118208778 + B1F SINE Alu 8 140 -9 5 823 268 326 0 11 chr6 31308553 31308643 -118208394 + MIRm SINE MIR 76 164 -112 5 823 25 51 0 0 chr6 31309235 31309274 -118207763 + AT_rich Low_complexity Low_complexity 1 39 0 5 823 774 166 272 0 chr6 31309274 31309443 -118207594 - B3 SINE B2 0 216 2 5 823 641 308 43 79 chr6 31309515 31309818 -118207219 - MLT1A0 LTR MaLR -11 354 63 5 823 1148 226 123 22 chr6 31309823 31310140 -118206897 + ORR1E LTR MaLR 6 354 -5 5 823 406 289 135 39 chr6 31310999 31311280 -118205757 - L1ME4a LINE L1 -5 6119 5812 5 823 905 259 121 32 chr6 31311643 31311824 -118205213 - MLT1B LTR MaLR -14 376 169 5 823 286 247 12 12 chr6 31311824 31311906 -118205131 - ID4 SINE ID 0 83 2 5 823 905 259 121 32 chr6 31311906 31312063 -118204974 - MLT1B LTR MaLR -222 168 9 5 823 334 297 162 37 chr6 31312633 31312874 -118204163 + MLT1I LTR MaLR 115 385 -26 5 823 210 343 15 0 chr6 31313337 31313404 -118203633 + ID4_ SINE ID 3 70 -13 5 823 257 297 79 26 chr6 31313900 31314014 -118203023 - L2a LINE L2 -96 3330 3211 5 823 1069 204 141 21 chr6 31314028 31314318 -118202719 - ORR1D1 LTR MaLR -6 368 44 5 823 1462 231 30 35 chr6 31314403 31314775 -118202262 + ORR1D2 LTR MaLR 1 370 0 5 823 1162 305 143 17 chr6 31314901 31315772 -118201265 - L1MB7 LINE L1 -17 6167 5186 5 823 252 167 0 0 chr6 31315775 31315823 -118201214 + CT-rich Low_complexity Low_complexity 2 49 0 5 823 566 225 0 47 chr6 31315956 31316105 -118200932 - Lx5 LINE L1 -4 7046 6905 5 823 266 150 0 0 chr6 31316099 31316139 -118200898 - L1MB7 LINE L1 -942 5204 5165 5 823 522 0 0 0 chr6 31316140 31316198 -118200839 + (TTA)n Simple_repeat Simple_repeat 1 58 0 5 823 387 314 29 0 chr6 31316199 31316304 -118200733 - RSINE1 SINE B4 -5 160 53 5 823 1485 75 0 5 chr6 31316367 31316555 -118200482 + B2_Mm2 SINE B2 3 189 -6 5 823 304 244 51 0 chr6 31316636 31316714 -118200323 - ID4_ SINE ID 0 83 2 5 823 636 250 21 0 chr6 31316742 31316882 -118200155 + B1F2 SINE Alu 2 144 -5 5 823 338 253 36 12 chr6 31317045 31317129 -118199908 - L1MB7 LINE L1 -1170 4976 4891 5 823 457 245 35 28 chr6 31317129 31317272 -118199765 + B1F1 SINE Alu 1 144 -5 5 823 297 227 106 0 chr6 31317285 31317351 -118199686 + ID4_ SINE ID 2 74 -9 5 823 547 226 137 12 chr6 31317477 31317638 -118199399 - L1MB7 LINE L1 -1385 4761 4581 5 823 207 357 12 0 chr6 31318074 31318158 -118198879 - MER5A DNA MER1_type -3 186 102 5 823 323 219 16 0 chr6 31318598 31318662 -118198375 - B1_Mus1 SINE Alu -82 66 2 5 823 986 151 38 22 chr6 31318670 31318853 -118198184 - B2_Mm2 SINE B2 -8 187 2 5 823 353 311 47 67 chr6 31319250 31319443 -118197594 - L1M5 LINE L1 -542 5698 5510 5 823 514 281 45 7 chr6 31319480 31319634 -118197403 + RSINE1 SINE B4 4 163 -2 5 823 773 279 51 36 chr6 31319794 31320125 -118196912 - ORR1E LTR MaLR 0 359 24 5 823 186 0 28 56 chr6 31320225 31320261 -118196776 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 5 823 242 282 84 0 chr6 31320266 31320337 -118196700 - PB1D10 SINE Alu -36 81 5 5 823 326 121 15 0 chr6 31321576 31321642 -118195395 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 823 303 164 115 0 chr6 31321658 31321719 -118195318 + B4A SINE B4 225 292 0 5 823 591 288 72 53 chr6 31322588 31323023 -118194014 - MLT1C LTR MaLR -2 465 20 5 823 282 304 47 68 chr6 31323031 31323179 -118193858 + LTR33 LTR ERVL 39 183 -332 5 823 23 0 0 0 chr6 31323580 31323603 -118193434 + AT_rich Low_complexity Low_complexity 1 23 0 5 823 360 0 0 0 chr6 31323679 31323719 -118193318 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 5 823 1058 59 37 0 chr6 31323721 31323857 -118193180 - B1_Mus1 SINE Alu -6 142 2 5 823 193 352 111 53 chr6 31323980 31324046 -118192991 - L2 LINE L2 -555 2864 2794 5 823 1215 35 0 0 chr6 31324046 31324188 -118192849 + B1_Mus2 SINE Alu 1 142 -5 5 823 193 352 111 53 chr6 31324188 31324292 -118192745 - L2 LINE L2 -626 2793 2684 5 823 349 256 16 49 chr6 31324618 31324741 -118192296 - LTR16D LTR ERVL -4 647 529 5 823 241 280 126 19 chr6 31325357 31325529 -118191508 + MIRb SINE MIR 9 191 -71 5 823 843 146 0 0 chr6 31325921 31326051 -118190986 + B3 SINE B2 1 130 -86 5 823 234 0 0 0 chr6 31326079 31326105 -118190932 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 102 43 0 0 0 chr6 31326187 31326230 -118190807 + AT_rich Low_complexity Low_complexity 1 43 0 5 824 590 228 117 6 chr6 31326293 31326456 -118190581 - B3A SINE B2 -16 182 2 5 824 720 180 15 30 chr6 31326546 31326678 -118190359 - B1_Mur1 SINE Alu -13 136 7 5 824 620 251 47 68 chr6 31326962 31327154 -118189883 + B3A SINE B2 10 197 -1 5 824 999 112 234 12 chr6 31328314 31328485 -118188552 + B3 SINE B2 1 209 -7 5 824 265 230 108 0 chr6 31328514 31328588 -118188449 + ID4_ SINE ID 2 83 0 6 824 653 242 204 125 chr6 31328739 31328916 -118188121 + B4A SINE B4 2 230 -62 6 824 839 263 25 5 chr6 31328916 31329115 -118187922 + B3 SINE B2 2 204 -12 6 824 653 242 204 125 chr6 31329115 31329201 -118187836 + B4A SINE B4 231 286 -6 6 824 294 143 0 0 chr6 31329211 31329260 -118187777 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 824 736 272 133 29 chr6 31329424 31329769 -118187268 + MLT1C LTR MaLR 87 467 0 6 824 22 0 0 0 chr6 31330004 31330026 -118187011 + AT_rich Low_complexity Low_complexity 1 22 0 6 824 730 263 0 0 chr6 31330072 31330224 -118186813 - RSINE1 SINE B4 -12 153 2 6 824 826 266 81 84 chr6 31330379 31330724 -118186313 + ORR1E LTR MaLR 11 354 -5 6 824 229 286 40 30 chr6 31330758 31330859 -118186178 + MLT1H2 LTR MaLR 382 483 -6 6 824 242 293 59 29 chr6 31331329 31331431 -118185606 + MLT1A1 LTR MaLR 300 404 -4 6 824 245 180 191 32 chr6 31331435 31331498 -118185539 - MER20 DNA MER1_type -115 104 32 6 824 470 254 98 69 chr6 31331548 31331658 -118185379 + ID_B1 SINE B4 1 98 -126 6 824 213 39 0 0 chr6 31331658 31331684 -118185353 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 6 824 470 254 98 69 chr6 31331684 31331776 -118185261 + ID_B1 SINE B4 99 209 -15 6 824 201 39 0 0 chr6 31331779 31331805 -118185232 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 6 824 188 163 23 0 chr6 31331807 31331850 -118185187 + GA-rich Low_complexity Low_complexity 2 45 0 6 824 344 317 104 15 chr6 31331930 31332199 -118184838 + L1MC4 LINE L1 7749 8041 -1 6 824 279 0 0 0 chr6 31332965 31332996 -118184041 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 824 468 35 0 0 chr6 31332996 31333054 -118183983 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 824 801 240 94 17 chr6 31333079 31333312 -118183725 - B4A SINE B4 -41 251 1 6 824 345 350 0 29 chr6 31333323 31333426 -118183611 - PB1D10 SINE Alu -15 102 3 6 824 466 261 18 18 chr6 31333668 31333781 -118183256 + PB1D9 SINE Alu 2 114 -6 6 824 273 200 16 32 chr6 31334023 31334085 -118182952 - ID4 SINE ID -6 77 17 6 824 334 281 189 53 chr6 31334145 31334389 -118182648 + L1MC4a LINE L1 5637 5913 -1969 6 824 1474 55 43 16 chr6 31334410 31334594 -118182443 + B2_Mm2 SINE B2 2 190 -5 6 824 335 286 71 0 chr6 31337065 31337163 -118179874 + PB1D7 SINE Alu 2 106 -14 6 824 1191 49 7 7 chr6 31337180 31337323 -118179714 + B1_Mm SINE Alu 1 143 -4 6 824 210 37 0 0 chr6 31337334 31337361 -118179676 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 824 1271 195 203 22 chr6 31337507 31337827 -118179210 + MTE2a LTR MaLR 2 379 0 6 824 444 266 18 0 chr6 31337827 31337940 -118179097 + B1_Mur1 SINE Alu 6 120 -29 6 824 515 56 14 0 chr6 31337940 31338011 -118179026 + (TAA)n Simple_repeat Simple_repeat 2 73 0 6 824 290 229 0 0 chr6 31338213 31338261 -118178776 + RSINE1 SINE B4 2 49 -116 6 824 261 0 0 0 chr6 31338261 31338290 -118178747 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 824 1144 73 0 0 chr6 31338341 31338477 -118178560 + B1_Mus2 SINE Alu 1 136 -11 6 824 288 0 0 0 chr6 31338477 31338509 -118178528 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 6 824 275 178 0 0 chr6 31338521 31338566 -118178471 + RSINE1 SINE B4 3 47 -118 6 824 503 224 84 0 chr6 31338649 31338756 -118178281 + RSINE1 SINE B4 2 117 -48 6 824 589 119 9 18 chr6 31338875 31338986 -118178051 + (TCTCCC)n Simple_repeat Simple_repeat 1 110 0 6 824 342 0 0 0 chr6 31338995 31339033 -118178004 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 824 254 233 33 0 chr6 31339192 31339252 -118177785 + (TATG)n Simple_repeat Simple_repeat 2 63 0 6 824 846 223 132 43 chr6 31340140 31340398 -118176639 + B4 SINE B4 2 282 -10 6 824 850 259 69 132 chr6 31341490 31341779 -118175258 - MTE2b LTR MaLR 0 379 109 6 824 595 264 31 0 chr6 31341783 31341912 -118175125 + B3A SINE B2 4 136 -62 6 824 313 314 12 0 chr6 31341901 31341978 -118175059 - MTE-int LTR MaLR -57 1523 1446 6 824 1238 154 10 0 chr6 31341978 31342179 -118174858 - URR1A DNA MER1_type 0 226 24 6 824 2823 256 142 45 chr6 31342194 31343327 -118173710 - MTE-int LTR MaLR -193 1387 2 6 824 1023 254 110 65 chr6 31343338 31343692 -118173345 - MTE2b LTR MaLR -9 370 1 6 824 1342 27 0 0 chr6 31344048 31344195 -118172842 + B1_Mus2 SINE Alu 1 147 0 6 824 186 133 0 0 chr6 31344195 31344225 -118172812 + (A)n Simple_repeat Simple_repeat 1 30 0 6 824 1142 253 102 56 chr6 31344439 31344513 -118172524 + MLT1A1 LTR MaLR 2 72 -336 6 824 1479 50 39 0 chr6 31344513 31344692 -118172345 + B2_Mm2 SINE B2 2 187 -8 6 824 1142 253 102 56 chr6 31344692 31344990 -118172047 + MLT1A1 LTR MaLR 73 391 -17 6 824 363 299 102 9 chr6 31346740 31346848 -118170189 + PB1D9 SINE Alu 1 118 -2 6 824 892 208 99 48 chr6 31346951 31347244 -118169793 + Lx9 LINE L1 7330 7637 -7 6 824 267 31 0 0 chr6 31347318 31347350 -118169687 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 824 210 299 10 10 chr6 31349121 31349219 -118167818 + (CGGGG)n Simple_repeat Simple_repeat 5 102 0 6 824 204 216 13 26 chr6 31349972 31350048 -118166989 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 6 824 223 174 0 0 chr6 31349976 31350022 -118167015 + T-rich Low_complexity Low_complexity 1 46 0 6 824 450 235 28 83 chr6 31350981 31351125 -118165912 + ID_B1 SINE B4 70 205 -19 6 824 323 221 113 83 chr6 31351148 31351281 -118165756 - MIR SINE MIR -117 151 15 6 824 523 270 165 35 chr6 31351364 31351594 -118165443 + B4A SINE B4 27 286 -6 6 824 195 288 75 15 chr6 31352084 31352151 -118164886 - MIR SINE MIR -57 151 81 6 824 245 298 130 29 chr6 31352196 31352445 -118164592 - MIRc SINE MIR -3 259 1 6 824 1858 184 79 12 chr6 31352463 31352882 -118164155 - MT-int LTR MaLR -325 773 327 6 824 237 255 0 0 chr6 31352876 31352923 -118164114 - ID4 SINE ID -32 51 5 6 824 201 74 0 0 chr6 31352944 31352971 -118164066 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 824 394 296 71 43 chr6 31353001 31353185 -118163852 - L1M5 LINE L1 -3610 2536 2348 6 824 215 233 0 0 chr6 31353401 31353444 -118163593 + GA-rich Low_complexity Low_complexity 2 44 0 6 824 525 256 58 0 chr6 31353445 31353566 -118163471 - RSINE1 SINE B4 -35 130 3 6 824 1169 49 20 14 chr6 31353972 31354118 -118162919 + B1_Mus1 SINE Alu 2 148 0 6 824 1068 196 22 212 chr6 31354191 31354639 -118162398 + ORR1D2 LTR MaLR 1 363 -7 6 824 519 273 213 13 chr6 31355634 31356007 -118161030 - L1MB7 LINE L1 -161 6017 5572 6 824 264 240 0 0 chr6 31356192 31356313 -118160724 + (TG)n Simple_repeat Simple_repeat 1 121 0 6 824 671 205 55 8 chr6 31356422 31356550 -118160487 + B1_Mur1 SINE Alu 12 145 -4 6 824 328 302 118 75 chr6 31357786 31357972 -118159065 - B3A SINE B2 -2 196 3 6 824 742 287 110 116 chr6 31358182 31358718 -118158319 - LTR48B LTR ERV1 -2 642 110 6 824 597 221 49 42 chr6 31358949 31359091 -118157946 + RSINE1 SINE B4 2 144 -21 6 824 406 300 114 48 chr6 31360617 31360953 -118156084 - MLT1E1A LTR MaLR -4 676 20 6 824 21 0 0 0 chr6 31361013 31361034 -118156003 + AT_rich Low_complexity Low_complexity 1 21 0 6 824 728 212 61 6 chr6 31361039 31361219 -118155818 - B3 SINE B2 -26 190 1 6 824 459 312 12 1 chr6 31361357 31361542 -118155495 - L1MCa LINE L1 -655 6207 6011 6 824 644 174 35 9 chr6 31361575 31361691 -118155346 - PB1D9 SINE Alu 0 120 2 6 824 266 192 58 0 chr6 31361747 31361799 -118155238 - L1M3 LINE L1 -622 5567 5513 6 824 387 0 0 0 chr6 31361800 31361843 -118155194 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 824 338 210 48 0 chr6 31361843 31361905 -118155132 - RSINE1 SINE B4 -53 112 48 6 824 568 223 137 31 chr6 31361947 31362327 -118154710 - L1MCa LINE L1 -859 5918 5495 6 824 727 245 134 37 chr6 31362319 31362373 -118154664 + L1MA5 LINE L1 5499 5552 -739 6 824 315 0 0 0 chr6 31362373 31362408 -118154629 + (CAGT)n Simple_repeat Simple_repeat 2 36 0 6 824 727 245 134 37 chr6 31362408 31362599 -118154438 + L1MA5 LINE L1 5553 5768 -523 6 824 662 254 113 0 chr6 31362619 31362796 -118154241 + B3 SINE B2 9 205 -11 6 824 191 88 29 0 chr6 31362812 31362846 -118154191 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 824 533 267 136 20 chr6 31362884 31363083 -118153954 + L1MA5 LINE L1 5797 6018 -282 6 824 405 261 65 49 chr6 31363144 31363329 -118153708 + L1MA5 LINE L1 6110 6297 -3 6 824 449 207 326 43 chr6 31363339 31363457 -118153580 + B3A SINE B2 1 164 -34 6 824 198 0 0 0 chr6 31363457 31363479 -118153558 + (CAGG)n Simple_repeat Simple_repeat 1 22 0 6 824 480 99 0 0 chr6 31363481 31363552 -118153485 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 824 420 20 0 0 chr6 31363552 31363600 -118153437 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 824 449 207 326 43 chr6 31363600 31363618 -118153419 + B3A SINE B2 165 180 -18 6 824 1352 265 121 42 chr6 31363930 31364861 -118152176 - L1MCa LINE L1 -2869 3695 2679 6 824 207 0 0 0 chr6 31364861 31364884 -118152153 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 824 472 125 11 43 chr6 31364886 31364978 -118152059 - L1Md_F2 LINE L1 -1 6581 6493 6 824 1352 237 92 27 chr6 31364978 31365186 -118151851 - L1MCa LINE L1 -3886 2678 2467 6 824 1071 245 79 14 chr6 31365273 31365563 -118151474 - ORR1D2 LTR MaLR -61 309 1 6 824 303 272 12 0 chr6 31365564 31365645 -118151392 - L1MCa LINE L1 -4390 2361 2280 6 824 229 336 27 27 chr6 31365667 31365777 -118151260 - MLT1A0 LTR MaLR 0 365 256 6 824 2800 278 84 30 chr6 31366153 31367059 -118149978 - Lx8 LINE L1 -329 7144 6190 6 824 396 231 99 66 chr6 31367233 31367414 -118149623 - L1MCa LINE L1 -4926 1825 1639 6 824 864 227 277 14 chr6 31367423 31367705 -118149332 + MTD LTR MaLR 64 419 0 6 824 242 247 64 64 chr6 31367705 31367742 -118149295 - L1MCa LINE L1 -5097 1654 1621 6 824 183 80 0 0 chr6 31367742 31367767 -118149270 + (TTG)n Simple_repeat Simple_repeat 3 27 0 6 824 242 247 64 64 chr6 31367767 31367885 -118149152 - L1MCa LINE L1 -5131 1620 1500 6 824 382 249 105 41 chr6 31367971 31368143 -118148894 - L1MCa LINE L1 -5496 1255 987 6 824 495 167 33 11 chr6 31368398 31368489 -118148548 - B3 SINE B2 -122 94 2 6 824 242 194 118 18 chr6 31368611 31368721 -118148316 - L1MD3 LINE L1 -961 7034 6914 6 824 28 0 0 0 chr6 31369204 31369232 -118147805 + AT_rich Low_complexity Low_complexity 1 28 0 6 824 228 158 0 0 chr6 31369830 31369887 -118147150 + T-rich Low_complexity Low_complexity 4 60 0 7 824 2036 299 85 22 chr6 31371381 31372196 -118144841 + Lx8 LINE L1 6578 7443 -30 7 824 256 284 137 137 chr6 31372014 31372218 -118144819 + RMER1C Other Other 1121 1324 -18 7 824 941 281 87 58 chr6 31372283 31372927 -118144110 + L1_Mur3 LINE L1 2395 3059 -2818 7 824 872 196 0 0 chr6 31372927 31373065 -118143972 + B1_Mus1 SINE Alu 1 138 -10 7 824 189 0 0 0 chr6 31373065 31373086 -118143951 + (CAA)n Simple_repeat Simple_repeat 2 22 0 7 824 594 304 106 30 chr6 31373086 31373104 -118143933 + L1_Mur3 LINE L1 3060 3076 -2801 7 824 386 292 168 76 chr6 31373146 31373300 -118143737 + B4A SINE B4 1 180 -112 7 824 198 0 0 0 chr6 31373300 31373322 -118143715 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 824 386 292 168 76 chr6 31373322 31373352 -118143685 + B4A SINE B4 181 202 -90 7 824 1977 187 145 34 chr6 31373351 31373855 -118143182 - RLTR20B3 LTR ERVK -13 564 5 7 824 651 312 99 32 chr6 31373958 31374140 -118142897 + L1_Rod LINE L1 3115 3307 -2540 7 824 805 182 7 28 chr6 31374140 31374281 -118142756 + B1_Mur1 SINE Alu 3 140 -9 7 824 651 312 99 32 chr6 31374281 31374635 -118142402 + L1_Rod LINE L1 3308 3686 -2161 7 824 1120 118 5 118 chr6 31374638 31374849 -118142188 + B2_Mm2 SINE B2 1 187 -8 7 824 604 261 53 5 chr6 31374850 31375039 -118141998 + L1_Mur3 LINE L1 3700 3897 -1983 7 824 759 286 54 5 chr6 31375050 31375236 -118141801 + B3 SINE B2 1 195 -21 7 824 1561 276 133 58 chr6 31375239 31376147 -118140890 + L1M2 LINE L1 3962 4937 -1206 7 824 412 260 57 8 chr6 31378342 31378466 -118138571 + MER58B DNA MER1_type 207 336 -5 7 824 1079 221 24 14 chr6 31379162 31379369 -118137668 - B3 SINE B2 -7 209 1 7 824 2057 113 13 35 chr6 31379409 31379721 -118137316 + Lx4A LINE L1 6753 7057 -1 7 824 268 329 105 12 chr6 31380366 31380452 -118136585 - PB1D10 SINE Alu -11 106 13 7 824 3066 65 30 15 chr6 31380480 31380874 -118136163 + MTB LTR MaLR 1 400 0 7 824 1276 48 0 0 chr6 31380874 31381021 -118136016 + B1_Mus2 SINE Alu 1 147 0 7 824 183 80 0 0 chr6 31381021 31381046 -118135991 + (A)n Simple_repeat Simple_repeat 1 25 0 7 824 29 28 0 0 chr6 31381556 31381592 -118135445 + AT_rich Low_complexity Low_complexity 1 36 0 7 824 977 155 7 0 chr6 31382236 31382384 -118134653 - B1_Mur4 SINE Alu 0 150 2 7 824 450 0 0 0 chr6 31382391 31382441 -118134596 + (CTG)n Simple_repeat Simple_repeat 1 50 0 7 824 483 18 0 0 chr6 31382441 31382497 -118134540 + (TCC)n Simple_repeat Simple_repeat 3 58 0 7 824 182 320 0 0 chr6 31382546 31382616 -118134421 + MIR SINE MIR 85 160 -116 7 824 1076 70 0 0 chr6 31382648 31382776 -118134261 + B1_Mus2 SINE Alu 1 128 -19 7 824 441 0 0 0 chr6 31382783 31382832 -118134205 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 7 824 454 202 159 35 chr6 31383897 31384010 -118133027 + ID_B1 SINE B4 69 195 -29 7 824 1441 56 21 37 chr6 31384949 31385136 -118131901 - B2_Mm2 SINE B2 -10 185 2 7 824 655 280 131 24 chr6 31385443 31385856 -118131181 - L1ME1 LINE L1 -207 5972 5516 7 824 330 251 201 26 chr6 31386006 31386235 -118130802 - L1ME1 LINE L1 -657 5522 5254 7 824 253 294 158 4 chr6 31386524 31386777 -118130260 - L1ME1 LINE L1 -901 5245 4954 7 824 517 251 48 51 chr6 31386804 31387113 -118129924 - L1ME1 LINE L1 -1362 4784 4474 7 824 417 306 162 50 chr6 31387123 31388079 -118128958 - L1ME1 LINE L1 -1832 4314 3252 7 824 339 363 24 16 chr6 31388104 31388230 -118128807 - B1F1 SINE Alu -18 131 5 7 824 3457 192 27 28 chr6 31388579 31389293 -118127744 - RMER1C Other Other -8 1334 622 7 824 314 188 0 15 chr6 31389675 31389740 -118127297 - RMER1B Other Other -396 670 607 7 824 329 253 33 33 chr6 31389788 31389878 -118127159 - MLT-int LTR MaLR -90 1645 1556 7 824 300 204 92 51 chr6 31389878 31389976 -118127061 + B3 SINE B2 87 188 -28 7 824 1150 154 48 5 chr6 31389982 31390191 -118126846 - RLTR17 LTR ERVK -264 428 211 7 824 551 322 143 43 chr6 31390230 31391013 -118126024 - L1MEe LINE L1 -2172 3974 3114 7 824 662 204 6 114 chr6 31391044 31391210 -118125827 - B1F2 SINE Alu 0 149 2 7 824 279 279 106 8 chr6 31391478 31391601 -118125436 - L1MEe LINE L1 -3396 2750 2616 7 824 24 24 0 24 chr6 31391722 31391741 -118125296 + AT_rich Low_complexity Low_complexity 1 19 0 7 824 1163 68 0 0 chr6 31391741 31391889 -118125148 - B1_Mus1 SINE Alu 0 148 1 7 824 24 24 0 24 chr6 31391889 31391911 -118125126 + AT_rich Low_complexity Low_complexity 1 22 0 7 824 685 278 10 46 chr6 31391973 31392169 -118124868 - ID_B1 SINE B4 -7 217 29 7 824 288 254 60 0 chr6 31392114 31392181 -118124856 - ID4_ SINE ID -1 82 12 7 824 602 66 349 0 chr6 31392263 31392369 -118124668 - B1_Mus1 SINE Alu -5 143 1 7 824 382 280 112 12 chr6 31392381 31392551 -118124486 - B4A SINE B4 0 292 106 7 824 407 289 108 33 chr6 31392886 31393193 -118123844 - L1MEe LINE L1 -4439 1727 1398 7 824 281 190 40 20 chr6 31393696 31393807 -118123230 + B1F2 SINE Alu 2 114 -35 7 824 183 167 0 0 chr6 31394211 31394253 -118122784 + (CAT)n Simple_repeat Simple_repeat 1 42 0 7 824 308 322 164 24 chr6 31394301 31394514 -118122523 - MIR SINE MIR -18 244 2 7 824 262 308 51 70 chr6 31394651 31394808 -118122229 - ORR1C2 LTR MaLR -137 247 94 7 824 264 190 50 33 chr6 31394827 31394887 -118122150 - MTD LTR MaLR 0 419 359 7 824 192 77 0 0 chr6 31394982 31395008 -118122029 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 824 186 103 0 0 chr6 31395008 31395037 -118122000 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 824 841 299 82 76 chr6 31395156 31395645 -118121392 - MT2A LTR ERVL -40 493 2 7 824 1695 208 61 3 chr6 31395646 31395989 -118121048 - MTD LTR MaLR -56 363 1 7 824 363 96 0 0 chr6 31396113 31396165 -118120872 + (CATA)n Simple_repeat Simple_repeat 3 54 0 7 824 209 57 0 28 chr6 31396272 31396308 -118120729 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 7 824 446 258 191 0 chr6 31396700 31396878 -118120159 + ID_B1 SINE B4 5 216 -8 7 824 514 245 48 27 chr6 31396933 31397080 -118119957 + ID_B1 SINE B4 73 222 -2 7 824 673 168 62 23 chr6 31396957 31397085 -118119952 + B1_Mur1 SINE Alu 17 149 0 7 824 509 279 7 22 chr6 31397583 31397722 -118119315 - B1F SINE Alu -12 137 1 7 824 232 340 117 74 chr6 31398094 31398351 -118118686 - MLT1L LTR MaLR -150 460 193 7 824 252 323 100 57 chr6 31398480 31398690 -118118347 + MIR SINE MIR 22 240 -22 7 824 377 198 12 0 chr6 31399368 31399454 -118117583 + (TA)n Simple_repeat Simple_repeat 1 87 0 7 824 433 331 143 48 chr6 31399930 31400266 -118116771 - Tigger9a DNA Tigger -18 714 347 7 824 300 226 132 0 chr6 31400331 31400437 -118116600 - Tigger9a DNA Tigger -486 246 127 7 824 22 0 0 0 chr6 31400580 31400602 -118116435 + AT_rich Low_complexity Low_complexity 1 22 0 7 824 239 347 14 0 chr6 31401239 31401311 -118115726 + ID SINE ID 2 74 -150 7 824 198 0 0 0 chr6 31403347 31403369 -118113668 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 7 824 321 254 390 0 chr6 31403725 31403843 -118113194 - RSINE1 SINE B4 0 165 2 7 824 242 222 236 49 chr6 31404618 31404741 -118112296 - MIRb SINE MIR -118 150 5 7 824 360 292 0 50 chr6 31406237 31406348 -118110689 - MTEb LTR MaLR -13 366 262 7 824 690 47 0 0 chr6 31406348 31406434 -118110603 + (GGAA)n Simple_repeat Simple_repeat 2 87 0 7 824 260 184 183 65 chr6 31406434 31406462 -118110575 - MTEb LTR MaLR -129 249 217 7 824 1272 283 184 42 chr6 31406560 31407348 -118109689 - MTEb-int LTR MaLR -74 1435 548 7 824 458 310 59 12 chr6 31407415 31407585 -118109452 - MTEb-int LTR MaLR -1402 178 1 7 824 257 265 187 19 chr6 31407637 31407843 -118109194 - ORR1D1 LTR MaLR -115 244 6 7 824 242 406 27 34 chr6 31408626 31408774 -118108263 + MER5A DNA MER1_type 21 167 -22 7 824 198 0 0 0 chr6 31409296 31409318 -118107719 + (TTG)n Simple_repeat Simple_repeat 2 23 0 7 824 1105 176 28 14 chr6 31409561 31409774 -118107263 - B3 SINE B2 0 216 1 7 824 219 139 0 0 chr6 31410064 31410100 -118106937 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 7 824 219 139 0 0 chr6 31410244 31410280 -118106757 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 7 824 195 69 0 0 chr6 31410585 31410614 -118106423 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 824 213 273 12 49 chr6 31410850 31410931 -118106106 + CT-rich Low_complexity Low_complexity 5 82 0 7 824 216 296 169 0 chr6 31410944 31411015 -118106022 - PB1D10 SINE Alu -33 84 2 7 824 308 250 8 111 chr6 31411015 31411125 -118105912 + B1F SINE Alu 52 149 0 7 824 286 393 8 16 chr6 31411280 31411404 -118105633 - MLT1H LTR MaLR -205 344 222 7 824 253 346 69 30 chr6 31411415 31411546 -118105491 - MLT1H LTR MaLR -350 139 4 7 824 254 292 8 66 chr6 31412023 31412144 -118104893 - PB1D10 SINE Alu -3 114 1 7 824 2041 160 40 21 chr6 31412305 31412682 -118104355 + ORR1C2 LTR MaLR 1 384 0 7 824 246 85 0 48 chr6 31413225 31413287 -118103750 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 7 824 969 88 0 22 chr6 31413291 31413430 -118103607 - B1_Mus2 SINE Alu 0 147 12 7 824 537 231 13 40 chr6 31413296 31413445 -118103592 - ID_B1 SINE B4 -2 222 78 7 824 1520 278 159 70 chr6 31413639 31413752 -118103285 - Charlie1a DNA MER1_type -6 1449 1338 7 824 1276 20 0 0 chr6 31413752 31413899 -118103138 + B1_Mm SINE Alu 1 147 0 7 824 1520 278 159 70 chr6 31413899 31414634 -118102403 - Charlie1a DNA MER1_type -118 1337 525 7 824 834 177 0 20 chr6 31414634 31414784 -118102253 - B1_Mur2 SINE Alu -2 147 1 7 824 1520 278 159 70 chr6 31414784 31414893 -118102144 - Charlie1a DNA MER1_type -931 524 405 7 824 394 286 171 38 chr6 31414898 31415109 -118101928 - Charlie1b DNA MER1_type -246 277 39 7 824 396 312 142 11 chr6 31415259 31415396 -118101641 - L1MD LINE L1 -2032 4114 3958 7 824 180 0 0 0 chr6 31415396 31415416 -118101621 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 824 396 286 140 5 chr6 31415416 31415588 -118101449 - L1MD LINE L1 -2189 3957 3761 7 824 737 258 91 5 chr6 31415597 31415784 -118101253 + B3 SINE B2 9 211 -5 7 824 334 289 50 78 chr6 31416003 31416221 -118100816 - L1MD LINE L1 -2552 3594 3383 7 824 1140 76 0 0 chr6 31416282 31416427 -118100610 - B1_Mus2 SINE Alu 0 147 3 7 824 691 114 0 34 chr6 31417455 31417573 -118099464 - BC1_Mm scRNA scRNA -37 115 2 7 824 260 135 19 19 chr6 31417601 31417654 -118099383 + MTC LTR MaLR 1 53 -368 7 824 22 0 0 0 chr6 31418461 31418483 -118098554 + AT_rich Low_complexity Low_complexity 1 22 0 7 824 500 283 123 0 chr6 31420335 31420473 -118096564 + RSINE1 SINE B4 5 159 -6 7 824 1083 142 66 0 chr6 31420721 31420904 -118096133 + B2_Mm2 SINE B2 1 195 0 7 824 445 216 101 29 chr6 31421096 31421234 -118095803 + RSINE1 SINE B4 3 150 -15 8 824 631 231 33 8 chr6 31422469 31422591 -118094446 - B1_Mur1 SINE Alu -20 129 5 8 824 335 329 53 0 chr6 31422688 31422858 -118094179 + B3A SINE B2 2 180 -18 8 824 21 0 0 0 chr6 31423468 31423489 -118093548 + AT_rich Low_complexity Low_complexity 1 21 0 8 824 742 157 35 21 chr6 31423574 31423717 -118093320 - B1_Mus1 SINE Alu 0 148 4 8 824 279 0 0 0 chr6 31425109 31425140 -118091897 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 8 824 1083 58 0 0 chr6 31425140 31425278 -118091759 - B1_Mus1 SINE Alu -7 141 4 8 824 388 274 90 52 chr6 31425357 31425533 -118091504 + MER2 DNA MER2_type 6 191 -154 8 824 1410 70 0 21 chr6 31425533 31425724 -118091313 + B2_Mm2 SINE B2 2 188 -7 8 824 388 274 90 52 chr6 31425724 31425759 -118091278 + MER2 DNA MER2_type 192 225 -120 8 824 432 0 0 0 chr6 31425759 31425807 -118091230 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 8 824 325 232 69 29 chr6 31426458 31426560 -118090477 - L1MC5 LINE L1 -735 7226 7121 8 824 297 295 106 23 chr6 31426641 31426773 -118090264 + B1F1 SINE Alu 2 144 -5 8 824 527 240 85 8 chr6 31426784 31426914 -118090123 + B1_Mur1 SINE Alu 2 141 -8 8 824 725 273 97 15 chr6 31428722 31428990 -118088047 + B4A SINE B4 1 290 -2 8 824 252 86 0 0 chr6 31428998 31429033 -118088004 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 824 468 310 31 31 chr6 31429213 31429376 -118087661 + RSINE1 SINE B4 3 165 0 8 824 228 299 58 73 chr6 31429376 31429404 -118087633 + B2_Mm1a SINE B2 2 189 -4 8 824 186 103 0 0 chr6 31429713 31429742 -118087295 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 8 824 237 294 58 71 chr6 31429773 31429927 -118087110 + HAL1 LINE L1 1386 1537 -970 8 824 23 33 0 0 chr6 31430840 31430870 -118086167 + AT_rich Low_complexity Low_complexity 1 30 0 8 824 253 235 127 42 chr6 31430974 31431116 -118085921 - L1ME4a LINE L1 0 6124 5971 8 824 237 372 127 6 chr6 31431198 31431363 -118085674 + L4 LINE RTE 685 869 -1160 8 824 951 47 133 0 chr6 31431380 31431508 -118085529 + B1_Mus2 SINE Alu 2 146 -1 8 824 441 0 0 0 chr6 31432231 31432280 -118084757 + (CTTTG)n Simple_repeat Simple_repeat 1 49 0 8 824 198 0 0 0 chr6 31432290 31432312 -118084725 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 8 824 258 341 0 12 chr6 31432335 31432418 -118084619 + CT-rich Low_complexity Low_complexity 1 82 0 8 824 980 155 5 42 chr6 31433305 31433520 -118083517 - L1Md_F2 LINE L1 0 6582 6376 8 824 201 308 15 0 chr6 31434790 31434855 -118082182 + MIR3 SINE MIR 130 195 -13 8 824 300 154 169 0 chr6 31435136 31435201 -118081836 - ID_B1 SINE B4 -7 217 142 8 824 262 266 59 25 chr6 31435201 31435232 -118081805 - B1_Mur1 SINE Alu -7 142 6 8 824 236 265 76 67 chr6 31435340 31435445 -118081592 + MLT1L LTR MaLR 3 108 -502 8 824 320 43 22 0 chr6 31436442 31436488 -118080549 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 8 824 1110 60 0 0 chr6 31436488 31436622 -118080415 - B1_Mm SINE Alu -13 134 1 8 824 1824 112 108 3 chr6 31437196 31437492 -118079545 + ORR1A4 LTR MaLR 1 327 -2 8 824 852 57 40 0 chr6 31437523 31437647 -118079390 + B1_Mus2 SINE Alu 9 137 -10 8 824 368 20 20 0 chr6 31437647 31437696 -118079341 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 8 824 1591 192 87 6 chr6 31437826 31438172 -118078865 - ORR1D1 LTR MaLR 0 374 1 8 824 227 302 0 87 chr6 31438512 31438528 -118078509 - ID_B1 SINE B4 -75 149 87 8 824 265 216 0 38 chr6 31438528 31438581 -118078456 - PB1D7 SINE Alu -64 56 6 8 824 264 59 0 0 chr6 31438626 31438660 -118078377 + (T)n Simple_repeat Simple_repeat 1 34 0 8 824 819 73 186 0 chr6 31438660 31438784 -118078253 - B1_Mus2 SINE Alu 0 147 1 8 824 245 244 25 13 chr6 31438786 31438865 -118078172 - L1M LINE L1 -751 5427 5348 8 824 254 242 80 90 chr6 31439070 31439170 -118077867 - L2a LINE L2 -36 3390 3292 8 824 383 232 135 10 chr6 31439606 31439702 -118077335 - PB1D10 SINE Alu -8 109 2 8 824 277 234 0 0 chr6 31440738 31440785 -118076252 - ID4_ SINE ID -14 69 23 8 824 233 318 0 0 chr6 31440785 31440801 -118076236 - B4 SINE B4 -222 70 8 8 824 357 181 76 105 chr6 31440812 31440917 -118076120 - PB1 SINE Alu -2 125 24 8 824 345 277 99 8 chr6 31440917 31440942 -118076095 - ID_B1 SINE B4 -2 221 80 8 824 524 267 0 0 chr6 31441032 31441133 -118075904 - PB1D10 SINE Alu -9 108 8 8 824 340 320 0 40 chr6 31441045 31441146 -118075891 - ID_B1 SINE B4 -48 176 80 8 824 2182 103 19 12 chr6 31441223 31441548 -118075489 - ORR1A2 LTR MaLR 0 327 1 8 824 190 0 67 0 chr6 31442608 31442638 -118074399 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 8 824 716 155 101 0 chr6 31442805 31442934 -118074103 + B1_Mur2 SINE Alu 3 144 -5 8 824 185 310 43 65 chr6 31443353 31443446 -118073591 - MIR SINE MIR -106 156 66 8 824 350 284 0 0 chr6 31443612 31443693 -118073344 + B1_Mur3 SINE Alu 1 81 -68 8 824 23 0 0 0 chr6 31443699 31443722 -118073315 + AT_rich Low_complexity Low_complexity 1 23 0 8 824 396 0 0 0 chr6 31443722 31443766 -118073271 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 8 824 1125 98 0 0 chr6 31443767 31443920 -118073117 - B2_Mm2 SINE B2 -41 154 2 8 824 614 202 152 6 chr6 31444149 31444313 -118072724 - B4A SINE B4 -102 190 3 8 824 22 0 0 0 chr6 31444579 31444601 -118072436 + AT_rich Low_complexity Low_complexity 1 22 0 8 824 233 279 159 14 chr6 31444759 31444828 -118072209 + ID2 SINE ID 2 80 -3 8 824 782 178 0 0 chr6 31444860 31444995 -118072042 - B1_Mur4 SINE Alu -11 139 5 8 824 278 145 43 0 chr6 31445078 31445147 -118071890 - Lx5 LINE L1 -1 7049 6978 8 824 240 300 39 20 chr6 31445237 31445258 -118071779 - B4A SINE B4 -187 105 2 8 824 530 148 0 0 chr6 31445258 31445339 -118071698 - B2_Mm2 SINE B2 -113 82 2 8 824 252 86 0 0 chr6 31445737 31445772 -118071265 + (CCCCCT)n Simple_repeat Simple_repeat 6 40 0 8 824 296 250 236 24 chr6 31446286 31446413 -118070624 - RSINE1 SINE B4 -8 157 4 8 824 218 321 13 13 chr6 31446877 31446956 -118070081 + B1F1 SINE Alu 4 82 -67 8 824 1577 27 5 16 chr6 31447066 31447252 -118069785 + B2_Mm1t SINE B2 2 185 -8 8 824 216 351 43 0 chr6 31448349 31448443 -118068594 - L2 LINE L2 -963 2456 2359 8 824 407 278 138 33 chr6 31448563 31448983 -118068054 + L1M5 LINE L1 3108 3571 -2575 8 824 1183 54 0 0 chr6 31448988 31449135 -118067902 + B1_Mus2 SINE Alu 1 147 0 8 824 21 36 0 0 chr6 31449135 31449163 -118067874 + AT_rich Low_complexity Low_complexity 1 28 0 8 824 570 253 112 31 chr6 31449261 31449457 -118067580 + B3 SINE B2 1 212 -4 8 824 207 0 0 0 chr6 31449858 31449881 -118067156 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 8 824 1558 284 84 32 chr6 31450551 31450685 -118066352 + L1MA4 LINE L1 5094 5249 -598 8 824 195 100 0 0 chr6 31450685 31450715 -118066322 + (TTAA)n Simple_repeat Simple_repeat 2 31 0 8 824 1558 286 84 32 chr6 31450715 31451391 -118065646 + L1MA4 LINE L1 5250 6017 -283 8 824 3404 137 145 25 chr6 31452911 31453243 -118063794 - RMER6D LTR ERVK 0 720 369 8 824 276 30 0 0 chr6 31453243 31453276 -118063761 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 824 3404 137 145 25 chr6 31453276 31453586 -118063451 - RMER6D LTR ERVK -352 368 1 8 824 509 310 62 8 chr6 31453812 31454069 -118062968 + MER82 DNA MER2_type 137 407 -246 8 824 328 171 42 28 chr6 31454590 31454662 -118062375 + L1MC4 LINE L1 6776 6848 -1194 8 824 867 161 256 0 chr6 31454682 31454850 -118062187 + B3 SINE B2 2 212 -4 8 824 507 320 78 29 chr6 31455240 31455546 -118061491 + L1MC4 LINE L1 7358 7678 -364 8 824 24 0 0 0 chr6 31456127 31456151 -118060886 + AT_rich Low_complexity Low_complexity 1 24 0 8 824 883 172 207 0 chr6 31456412 31456581 -118060456 + B3 SINE B2 3 206 -10 8 12 1525 138 0 0 chr6 31457256 31457481 -118059556 + URR1B DNA MER1_type 1 225 0 8 825 1201 55 7 0 chr6 31462124 31462270 -118054767 + B1_Mus2 SINE Alu 1 147 0 8 825 249 33 0 0 chr6 31462270 31462300 -118054737 + (A)n Simple_repeat Simple_repeat 1 30 0 8 825 532 167 0 20 chr6 31462351 31462449 -118054588 + PB1D9 SINE Alu 12 107 -13 8 825 330 299 54 23 chr6 31462596 31462726 -118054311 + RSINE1 SINE B4 3 136 -29 8 825 1328 82 43 0 chr6 31463045 31463229 -118053808 + B2_Mm2 SINE B2 2 193 -2 8 825 669 187 60 0 chr6 31465658 31465792 -118051245 - B1_Mur2 SINE Alu -7 142 1 8 825 509 288 85 11 chr6 31466857 31467040 -118049997 + ID_B1 SINE B4 1 201 -23 8 825 189 0 0 0 chr6 31468727 31468748 -118048289 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 825 274 250 118 0 chr6 31472641 31472717 -118044320 + MIR SINE MIR 66 150 -58 8 825 533 192 0 0 chr6 31473823 31473922 -118043115 - PB1D10 SINE Alu -10 107 9 8 825 293 263 71 57 chr6 31475942 31476083 -118040954 - B1F SINE Alu -3 146 4 8 825 189 200 222 0 chr6 31477054 31477099 -118039938 - MIRc SINE MIR -126 142 88 8 825 539 193 0 34 chr6 31477301 31477419 -118039618 + B1_Mur4 SINE Alu 1 114 -36 8 825 333 226 0 0 chr6 31477428 31477512 -118039525 + GA-rich Low_complexity Low_complexity 4 87 0 8 825 331 317 0 70 chr6 31477527 31477656 -118039381 - RSINE1 SINE B4 -15 150 31 8 825 252 0 0 0 chr6 31477666 31477694 -118039343 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 9 825 189 0 0 0 chr6 31477975 31477996 -118039041 + (C)n Simple_repeat Simple_repeat 1 21 0 9 825 180 0 0 0 chr6 31477996 31478015 -118039022 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 825 676 202 80 75 chr6 31478015 31478202 -118038835 - B3 SINE B2 -27 189 2 9 825 871 144 0 46 chr6 31478230 31478383 -118038654 + B1_Mus2 SINE Alu 2 147 0 9 825 204 216 0 0 chr6 31478388 31478439 -118038598 + A-rich Low_complexity Low_complexity 1 51 0 9 825 495 255 160 35 chr6 31479688 31480038 -118036999 - MTD LTR MaLR -17 362 3 9 825 227 164 69 52 chr6 31480361 31480419 -118036618 + 4.5SRNA scRNA scRNA 30 88 -6 9 825 518 164 39 0 chr6 31480367 31480471 -118036566 + B1_Mur2 SINE Alu 42 149 0 9 825 505 90 22 0 chr6 31480472 31480561 -118036476 + (TA)n Simple_repeat Simple_repeat 2 92 0 9 825 180 0 0 0 chr6 31480574 31480594 -118036443 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 825 234 0 0 0 chr6 31480594 31480619 -118036418 + (GA)n Simple_repeat Simple_repeat 1 26 0 9 825 447 19 0 0 chr6 31480642 31480694 -118036343 + (TA)n Simple_repeat Simple_repeat 2 53 0 9 825 298 235 225 8 chr6 31481691 31481811 -118035226 - B4 SINE B4 -18 274 129 9 825 999 155 10 70 chr6 31482010 31482267 -118034770 + ORR1C2 LTR MaLR 1 248 -111 9 825 243 0 0 0 chr6 31482271 31482298 -118034739 + (TC)n Simple_repeat Simple_repeat 1 27 0 9 825 663 182 22 262 chr6 31482298 31482497 -118034540 + ORR1C2 LTR MaLR 166 345 -39 9 825 632 191 30 8 chr6 31482497 31482629 -118034408 + B1_Mur4 SINE Alu 1 135 -15 9 825 519 182 22 262 chr6 31482629 31482704 -118034333 + ORR1C2 LTR MaLR 325 374 0 9 825 591 277 29 49 chr6 31482735 31482949 -118034088 - MER20 DNA MER1_type -4 215 5 9 825 207 0 0 0 chr6 31483543 31483566 -118033471 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 825 1523 47 16 10 chr6 31483851 31484043 -118032994 - B2_Mm2 SINE B2 -1 194 2 9 825 435 302 0 25 chr6 31484063 31484185 -118032852 - PB1D7 SINE Alu -1 119 1 9 825 1119 73 119 24 chr6 31484468 31484636 -118032401 - B2_Mm2 SINE B2 -10 185 2 9 825 1147 114 202 142 chr6 31485044 31485291 -118031746 + RMER6A LTR ERVK 1 321 -435 9 825 1384 69 26 21 chr6 31485291 31485483 -118031554 + B2_Mm1a SINE B2 1 193 0 9 825 1147 114 202 142 chr6 31485483 31485622 -118031415 + RMER6A LTR ERVK 322 410 -346 9 825 816 169 116 0 chr6 31485599 31485771 -118031266 + RMER6A LTR ERVK 558 749 -7 9 825 530 260 76 81 chr6 31485916 31486113 -118030924 + MTE2a LTR MaLR 1 196 -183 9 825 252 0 0 0 chr6 31486504 31486532 -118030505 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 825 317 220 30 99 chr6 31487185 31487286 -118029751 - PB1D10 SINE Alu 0 117 24 9 825 850 207 0 0 chr6 31487518 31487682 -118029355 + B3 SINE B2 1 164 -52 9 825 234 304 78 0 chr6 31487773 31487875 -118029162 + L1MCc LINE L1 1135 1244 -5179 9 825 511 300 99 28 chr6 31488068 31488373 -118028664 - L1M4 LINE L1 -699 5745 5421 9 825 235 208 168 8 chr6 31488370 31488501 -118028536 + L1M4 LINE L1 3754 3905 -2241 9 825 499 147 29 29 chr6 31488506 31488520 -118028517 - B2_Mm2 SINE B2 -5 190 177 9 825 763 146 105 68 chr6 31488520 31488711 -118028326 - B3A SINE B2 0 198 1 9 825 499 147 29 29 chr6 31488711 31488801 -118028236 - B2_Mm2 SINE B2 -19 176 86 9 825 1187 28 14 7 chr6 31488803 31488945 -118028092 + B1_Mm SINE Alu 5 147 0 9 825 330 81 53 13 chr6 31488946 31489021 -118028016 + (CAAAAA)n Simple_repeat Simple_repeat 3 80 0 9 825 711 99 0 0 chr6 31489025 31489126 -118027911 - B2_Mm2 SINE B2 -94 101 1 9 825 416 265 10 0 chr6 31489385 31489487 -118027550 + PB1D7 SINE Alu 18 120 0 9 825 333 237 68 9 chr6 31489501 31489616 -118027421 + L1M4 LINE L1 5357 5480 -699 9 825 372 261 0 0 chr6 31489684 31489777 -118027260 - ID4_ SINE ID -58 94 2 9 825 606 264 45 0 chr6 31489820 31489975 -118027062 - RSINE1 SINE B4 -1 164 3 9 825 329 240 38 57 chr6 31489999 31490105 -118026932 - PB1D10 SINE Alu -5 112 9 9 825 335 154 0 15 chr6 31490699 31490765 -118026272 + (TTCA)n Simple_repeat Simple_repeat 3 67 0 9 825 448 210 40 40 chr6 31490774 31490898 -118026139 - RSINE1 SINE B4 -39 126 3 9 825 377 285 75 45 chr6 31490936 31491204 -118025833 + L1MC4a LINE L1 6663 6938 -944 9 825 773 140 73 7 chr6 31493050 31493187 -118023850 + B1_Mur4 SINE Alu 3 148 -2 9 825 217 279 158 18 chr6 31493251 31493415 -118023622 - MER5A DNA MER1_type -1 188 2 9 825 193 378 56 7 chr6 31493417 31493561 -118023476 - L2 LINE L2 -2029 1390 1240 9 825 323 301 9 19 chr6 31493702 31493807 -118023230 + B3 SINE B2 12 115 -101 9 825 288 333 83 0 chr6 31493930 31494062 -118022975 + MER2 DNA MER2_type 202 344 -1 9 825 3141 42 42 0 chr6 31495152 31495532 -118021505 - MTB LTR MaLR 0 400 5 9 825 406 284 11 43 chr6 31496277 31496441 -118020596 - MER58A DNA MER1_type -2100 320 42 9 825 1333 229 13 29 chr6 31497103 31497413 -118019624 - Lx6 LINE L1 -209 7251 6947 9 825 397 252 15 44 chr6 31497428 31497565 -118019472 + Lx6 LINE L1 7309 7441 -19 9 825 368 88 18 0 chr6 31498162 31498219 -118018818 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 825 231 204 0 0 chr6 31498412 31498466 -118018571 + (CCA)n Simple_repeat Simple_repeat 2 55 0 9 825 312 120 0 0 chr6 31498464 31498514 -118018523 + (TCC)n Simple_repeat Simple_repeat 1 50 0 9 825 404 99 0 14 chr6 31500204 31500276 -118016761 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 825 558 0 0 0 chr6 31500464 31500526 -118016511 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 825 824 136 91 0 chr6 31500583 31500715 -118016322 + B1_Mus1 SINE Alu 5 148 0 3 825 1371 47 0 0 chr6 31502231 31502402 -118014635 + (TG)n Simple_repeat Simple_repeat 1 171 0 4 825 806 231 44 80 chr6 31503837 31504063 -118012974 - ID_B1 SINE B4 -6 218 1 5 825 494 168 246 9 chr6 31504534 31504648 -118012389 + B1_Mur4 SINE Alu 7 147 -3 6 825 230 0 33 0 chr6 31504696 31504726 -118012311 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 7 825 189 260 171 47 chr6 31505780 31505909 -118011128 - MIRb SINE MIR -119 149 5 8 825 324 64 0 0 chr6 31506297 31506344 -118010693 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 825 429 236 132 0 chr6 31507288 31507394 -118009643 - L2a LINE L2 -4 3422 3303 1 825 1002 104 35 0 chr6 31507410 31507554 -118009483 - URR1A DNA MER1_type -29 197 49 1 825 532 257 154 20 chr6 31507689 31507884 -118009153 + ID_B1 SINE B4 2 222 -2 1 825 439 228 69 0 chr6 31509203 31509304 -118007733 - PB1D7 SINE Alu -9 111 4 1 825 410 273 166 60 chr6 31509304 31509394 -118007643 - ID_B1 SINE B4 -1 207 4 1 825 244 119 71 0 chr6 31509424 31509466 -118007571 - PB1D10 SINE Alu -2 115 71 1 825 692 278 25 0 chr6 31509430 31509592 -118007445 - ID_B1 SINE B4 -8 216 51 1 825 185 59 59 0 chr6 31509646 31509680 -118007357 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1 825 455 200 143 0 chr6 31509680 31509785 -118007252 - PB1D9 SINE Alu 0 120 1 1 825 252 0 0 0 chr6 31511485 31511513 -118005524 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 1 825 1159 75 0 7 chr6 31511924 31512071 -118004966 + B1_Mm SINE Alu 2 147 0 2 825 285 146 0 0 chr6 31512071 31512119 -118004918 + (A)n Simple_repeat Simple_repeat 1 48 0 2 825 26 50 0 0 chr6 31513958 31513998 -118003039 + GC_rich Low_complexity Low_complexity 1 40 0 2 825 498 46 0 0 chr6 31514080 31514145 -118002892 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 825 324 0 0 0 chr6 31514470 31514506 -118002531 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 2 825 403 329 84 12 chr6 31514556 31514722 -118002315 - MIR SINE MIR -18 244 67 2 825 186 304 49 25 chr6 31514816 31514897 -118002140 + MIRb SINE MIR 18 100 -168 2 825 243 0 0 0 chr6 31515593 31515620 -118001417 + (T)n Simple_repeat Simple_repeat 1 27 0 2 825 369 0 0 0 chr6 31516146 31516187 -118000850 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 825 491 0 17 0 chr6 31516187 31516245 -118000792 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 825 300 224 17 0 chr6 31516249 31516307 -118000730 - ID4_ SINE ID -23 60 2 3 825 1345 25 31 0 chr6 31516326 31516488 -118000549 - B2_Mm2 SINE B2 -27 168 2 3 825 1000 86 7 13 chr6 31516560 31516714 -118000323 + (TATATG)n Simple_repeat Simple_repeat 4 156 0 3 825 188 0 74 0 chr6 31517593 31517620 -117999417 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 3 825 383 326 93 90 chr6 31518740 31518820 -117998217 + B4 SINE B4 2 83 -209 3 825 192 40 0 0 chr6 31518820 31518845 -117998192 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 825 383 326 93 90 chr6 31518845 31519054 -117997983 + B4 SINE B4 84 292 0 3 825 181 282 84 0 chr6 31519160 31519231 -117997806 + MIRc SINE MIR 69 145 -123 3 825 222 253 9 133 chr6 31520013 31520118 -117996919 - MIRb SINE MIR -56 212 121 3 825 196 309 55 77 chr6 31520688 31520779 -117996258 + L2b LINE L2 3265 3353 -22 3 825 789 290 123 80 chr6 31520798 31521188 -117995849 - MLT1A1 LTR MaLR -1 407 1 3 825 181 0 0 65 chr6 31521204 31521235 -117995802 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 4 825 502 297 175 28 chr6 31521243 31521534 -117995503 - ORR1E LTR MaLR -20 339 6 4 825 471 310 44 44 chr6 31521540 31521746 -117995291 - MIR SINE MIR -13 249 44 4 825 568 208 28 0 chr6 31522132 31522238 -117994799 + RSINE1 SINE B4 12 120 -45 4 825 918 155 7 13 chr6 31522244 31522394 -117994643 - B1_Mur3 SINE Alu 0 149 1 4 825 376 182 29 7 chr6 31523041 31523179 -117993858 + (CA)n Simple_repeat Simple_repeat 2 142 0 4 825 632 180 33 21 chr6 31523234 31523915 -117993122 + (CA)n Simple_repeat Simple_repeat 1 689 0 4 825 311 50 0 24 chr6 31523932 31523973 -117993064 + HAL1-3A_ME LINE L1 1976 2015 -843 4 825 390 260 71 55 chr6 31524325 31524396 -117992641 - CYRA11_Mm Unknown Y-chromosome -266 351 185 4 825 666 113 19 0 chr6 31524396 31524502 -117992535 + URR1B DNA MER1_type 118 225 0 4 825 214 269 35 3 chr6 31524844 31524913 -117992124 + BC1_Mm scRNA scRNA 6 77 -75 4 825 339 288 12 0 chr6 31524936 31525016 -117992021 - ID4_ SINE ID 0 83 3 5 825 231 36 0 0 chr6 31525055 31525083 -117991954 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 825 621 238 16 0 chr6 31525320 31525442 -117991595 - ID_B1 SINE B4 -8 216 93 5 825 1100 234 36 4 chr6 31525571 31525824 -117991213 - Lx9 LINE L1 -936 6708 6448 5 825 21 0 0 0 chr6 31525826 31525847 -117991190 + AT_rich Low_complexity Low_complexity 1 21 0 5 825 725 200 0 35 chr6 31525849 31525994 -117991043 + B1_Mur1 SINE Alu 10 149 0 5 825 246 208 0 0 chr6 31525997 31526050 -117990987 + GA-rich Low_complexity Low_complexity 3 55 0 5 825 1073 99 0 6 chr6 31526059 31526221 -117990816 + (GAA)n Simple_repeat Simple_repeat 2 162 0 5 825 21 36 0 0 chr6 31526462 31526490 -117990547 + AT_rich Low_complexity Low_complexity 1 28 0 5 825 257 70 47 0 chr6 31526802 31526845 -117990192 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 5 825 1308 75 25 50 chr6 31526845 31527043 -117989994 - B2_Mm2 SINE B2 0 195 3 6 825 946 139 14 0 chr6 31527045 31527189 -117989848 - B1_Mus2 SINE Alu -1 146 1 6 825 234 0 0 0 chr6 31527256 31527282 -117989755 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 825 553 143 33 0 chr6 31527306 31527397 -117989640 + RSINE1 SINE B4 2 95 -70 6 825 450 0 0 0 chr6 31527417 31527467 -117989570 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 825 264 288 38 0 chr6 31527541 31527621 -117989416 + ID4 SINE ID 1 83 0 6 825 288 0 0 0 chr6 31527626 31527658 -117989379 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 825 470 354 52 74 chr6 31527882 31527941 -117989096 - ORR1E LTR MaLR -1 358 301 6 825 1436 254 69 17 chr6 31527941 31528301 -117988736 + MTE2b LTR MaLR 1 379 0 6 825 470 354 52 74 chr6 31528301 31528376 -117988661 - ORR1E LTR MaLR -59 300 193 6 825 705 119 0 0 chr6 31528376 31528477 -117988560 + B1_Mur3 SINE Alu 19 119 -30 6 825 470 354 52 74 chr6 31528477 31528607 -117988430 - ORR1E LTR MaLR -59 192 1 6 825 265 231 35 96 chr6 31528698 31528785 -117988252 + MLT1C LTR MaLR 8 87 -380 7 825 822 180 8 0 chr6 31528785 31528913 -117988124 + B3 SINE B2 3 131 -85 7 825 588 95 0 0 chr6 31528913 31528997 -117988040 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 825 646 228 69 40 chr6 31528997 31529042 -117987995 + B2_Mm2 SINE B2 143 181 -14 7 825 3209 231 57 64 chr6 31529040 31529980 -117987057 + RMER17B LTR ERVK 25 958 0 7 825 463 179 45 36 chr6 31530204 31530314 -117986723 - ORR1D1 LTR MaLR -256 118 8 7 825 2239 204 45 9 chr6 31530311 31530695 -117986342 - MT2A LTR ERVL -39 562 94 7 825 278 0 54 0 chr6 31530695 31530732 -117986305 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 7 825 2239 195 45 7 chr6 31530732 31530814 -117986223 - MT2A LTR ERVL -440 93 1 7 825 806 150 38 0 chr6 31530959 31531092 -117985945 - B1_Mur4 SINE Alu 0 150 13 7 825 486 261 34 74 chr6 31530961 31531110 -117985927 - B4 SINE B4 -69 223 81 7 825 713 70 10 0 chr6 31531188 31531288 -117985749 + (TTCC)n Simple_repeat Simple_repeat 3 103 0 8 825 877 28 0 0 chr6 31531305 31531411 -117985626 - B1_Mus2 SINE Alu 0 147 42 8 825 298 158 112 56 chr6 31531348 31531455 -117985582 - RLTR25B LTR ERVK -519 509 397 8 825 304 0 0 160 chr6 31531456 31531612 -117985425 + (CTCTG)n Simple_repeat Simple_repeat 5 135 0 8 825 349 119 0 63 chr6 31531613 31531676 -117985361 - B1_Mus2 SINE Alu -88 59 1 8 825 758 237 0 0 chr6 31531701 31531836 -117985201 - B1_Mur1 SINE Alu 0 149 15 8 825 517 148 50 12 chr6 31531912 31532181 -117984856 + (TG)n Simple_repeat Simple_repeat 1 279 0 8 825 257 250 38 50 chr6 31532181 31532261 -117984776 - ID4 SINE ID -4 79 1 8 825 353 245 244 8 chr6 31532656 31532794 -117984243 + MTEb LTR MaLR 3 169 -210 8 825 265 216 20 0 chr6 31532874 31532925 -117984112 - ID2 SINE ID -3 80 29 8 825 695 196 7 29 chr6 31533048 31533185 -117983852 + RSINE1 SINE B4 3 136 -29 8 825 483 153 0 0 chr6 31533189 31533287 -117983750 + (CAAT)n Simple_repeat Simple_repeat 2 99 0 9 825 451 178 24 7 chr6 31533323 31533430 -117983607 - PB1D9 SINE Alu -11 116 5 9 825 571 273 59 25 chr6 31533531 31533701 -117983336 + B3 SINE B2 7 183 -33 9 825 264 111 0 0 chr6 31533701 31533746 -117983291 + (CATA)n Simple_repeat Simple_repeat 4 48 0 9 825 571 273 59 25 chr6 31533746 31533778 -117983259 + B3 SINE B2 184 216 0 9 825 272 91 0 22 chr6 31533786 31533831 -117983206 + (GAAA)n Simple_repeat Simple_repeat 3 46 0 9 825 1011 120 53 12 chr6 31533833 31534002 -117983035 + B2_Mm2 SINE B2 4 179 -16 9 825 1151 107 6 0 chr6 31534003 31534181 -117982856 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 9 825 1232 209 0 5 chr6 31534187 31534399 -117982638 + B3 SINE B2 1 211 -5 9 825 261 75 0 0 chr6 31535725 31535765 -117981272 + (TC)n Simple_repeat Simple_repeat 1 40 0 9 825 261 0 0 0 chr6 31535765 31535794 -117981243 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 825 324 262 0 0 chr6 31535796 31535876 -117981161 - RMER30 DNA MER1_type -121 81 2 1 825 297 284 0 12 chr6 31536218 31536300 -117980737 + Charlie18a DNA MER1_type 118 198 -144 1 825 354 231 26 0 chr6 31536959 31537037 -117980000 + RMER15 LTR ERVL 405 484 -91 1 825 414 0 0 0 chr6 31538184 31538230 -117978807 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 825 1967 113 81 19 chr6 31538488 31538795 -117978242 - ORR1A3 LTR MaLR 0 326 1 1 825 231 243 14 14 chr6 31538800 31538871 -117978166 + (TATG)n Simple_repeat Simple_repeat 3 73 0 1 825 223 351 6 18 chr6 31538999 31539170 -117977867 + (TG)n Simple_repeat Simple_repeat 1 169 0 1 825 235 242 45 0 chr6 31539844 31539910 -117977127 + CT-rich Low_complexity Low_complexity 4 72 0 1 825 214 265 17 0 chr6 31539945 31540062 -117976975 + (TG)n Simple_repeat Simple_repeat 2 120 0 1 825 1372 251 103 25 chr6 31540071 31540136 -117976901 - RLTR18B LTR ERVK -6 506 435 1 825 2289 129 131 5 chr6 31540136 31540510 -117976527 - MTC LTR MaLR 0 421 1 1 825 1372 262 87 63 chr6 31540510 31541079 -117975958 - RLTR18B LTR ERVK -75 541 1 1 825 233 311 114 51 chr6 31541644 31541820 -117975217 - MIR SINE MIR -38 224 38 1 825 441 279 134 16 chr6 31544177 31544363 -117972674 - MLT1C LTR MaLR -152 315 108 1 825 244 213 16 16 chr6 31544375 31544437 -117972600 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 825 279 157 0 0 chr6 31544453 31544504 -117972533 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 825 709 214 87 119 chr6 31544657 31544774 -117972263 + B3 SINE B2 2 127 -89 1 825 2745 132 122 11 chr6 31544774 31545249 -117971788 - RLTR11A LTR ERVK 0 528 1 1 825 709 214 87 119 chr6 31545249 31545349 -117971688 + B3 SINE B2 128 212 -4 1 825 541 227 73 0 chr6 31545363 31545473 -117971564 + B3 SINE B2 1 118 -98 1 825 661 116 143 0 chr6 31545450 31545562 -117971475 + B1_Mur4 SINE Alu 23 150 0 1 825 336 186 27 126 chr6 31545668 31545779 -117971258 + RSINE1 SINE B4 5 104 -61 1 825 255 152 0 0 chr6 31545784 31545830 -117971207 + T-rich Low_complexity Low_complexity 1 46 0 1 825 1282 36 0 31 chr6 31545902 31546163 -117970874 + (GAAA)n Simple_repeat Simple_repeat 1 253 0 1 825 291 185 0 18 chr6 31546187 31546242 -117970795 - B1F1 SINE Alu -4 145 92 1 825 392 145 0 0 chr6 31546245 31546314 -117970723 - ORR1A1 LTR MaLR -1 345 277 1 825 389 269 66 19 chr6 31546323 31546429 -117970608 - PB1D7 SINE Alu 0 120 10 1 825 232 200 0 28 chr6 31547498 31547570 -117969467 + GA-rich Low_complexity Low_complexity 2 71 0 1 825 666 275 119 10 chr6 31547709 31547911 -117969126 - ID_B1 SINE B4 0 224 1 1 825 441 228 19 29 chr6 31547911 31548004 -117969033 - B1F SINE Alu -14 135 44 1 825 189 121 0 0 chr6 31548270 31548303 -117968734 + (CAGA)n Simple_repeat Simple_repeat 1 33 0 1 825 24 53 0 0 chr6 31548658 31548696 -117968341 + AT_rich Low_complexity Low_complexity 1 38 0 1 825 180 125 0 0 chr6 31549015 31549047 -117967990 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 825 495 180 71 9 chr6 31549064 31549176 -117967861 - PB1D9 SINE Alu -1 119 1 1 825 501 17 0 0 chr6 31549274 31549332 -117967705 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 825 663 217 80 0 chr6 31549416 31549554 -117967483 - B1_Mur2 SINE Alu 0 149 1 1 825 703 201 28 7 chr6 31549560 31549705 -117967332 - B1_Mur1 SINE Alu -1 148 1 1 825 210 228 94 42 chr6 31550112 31550208 -117966829 - MIR3 SINE MIR -14 194 94 1 825 233 309 0 56 chr6 31550832 31550904 -117966133 - tRNA-Ala-GCA tRNA tRNA -7 68 1 1 825 205 184 0 0 chr6 31551646 31551684 -117965353 + L3b LINE CR1 217 254 -228 1 825 289 317 85 0 chr6 31551739 31551821 -117965216 + ID_B1 SINE B4 42 130 -94 1 825 505 200 32 0 chr6 31552078 31552173 -117964864 + ID_B1 SINE B4 126 223 -1 1 825 225 0 0 0 chr6 31552317 31552342 -117964695 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 1 825 270 81 0 0 chr6 31553790 31553827 -117963210 + (T)n Simple_repeat Simple_repeat 1 37 0 1 825 688 251 112 55 chr6 31553966 31554004 -117963033 - Lx7 LINE L1 -358 7338 7301 1 825 501 17 0 0 chr6 31554004 31554062 -117962975 + (TTTTA)n Simple_repeat Simple_repeat 3 60 0 1 825 688 251 112 55 chr6 31554062 31554335 -117962702 - Lx7 LINE L1 -396 7300 7009 1 825 262 254 62 16 chr6 31554374 31554438 -117962599 + MER5A DNA MER1_type 119 185 -4 1 825 1104 124 0 0 chr6 31554551 31554729 -117962308 + (CAAG)n Simple_repeat Simple_repeat 1 178 0 1 825 722 228 150 0 chr6 31556179 31556359 -117960678 + ID_B1 SINE B4 3 209 -15 1 825 913 158 7 14 chr6 31557678 31557826 -117959211 + B1_Mur1 SINE Alu 3 149 0 1 825 583 262 45 28 chr6 31558023 31558200 -117958837 - RMER15 LTR ERVL -370 205 26 1 825 413 345 0 0 chr6 31558350 31558460 -117958577 - PB1D10 SINE Alu -6 111 2 1 825 728 330 73 18 chr6 31558460 31558798 -117958239 - Charlie1a DNA MER1_type -475 980 622 1 825 225 65 0 0 chr6 31558798 31558829 -117958208 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 825 409 240 36 0 chr6 31558833 31558934 -117958103 - B1_Mur4 SINE Alu -5 115 9 1 825 726 199 39 33 chr6 31558940 31559123 -117957914 - Charlie1a DNA MER1_type -825 630 449 1 825 3180 33 0 0 chr6 31559123 31559491 -117957546 + L1Md_T LINE L1 6215 6582 0 1 825 695 271 42 157 chr6 31559491 31559642 -117957395 - Charlie1a DNA MER1_type -1007 448 341 1 825 757 151 26 52 chr6 31559642 31559796 -117957241 + B1_Mur4 SINE Alu 1 150 0 1 825 695 271 42 157 chr6 31559796 31559862 -117957175 - Charlie1a DNA MER1_type -1115 340 275 1 825 321 271 146 0 chr6 31559866 31559962 -117957075 + PB1D10 SINE Alu 2 111 -6 1 825 588 332 35 5 chr6 31559989 31560171 -117956866 + ID_B1 SINE B4 22 209 -15 1 825 395 136 55 33 chr6 31560171 31560262 -117956775 + Lx9 LINE L1 7544 7636 -8 1 825 588 332 35 5 chr6 31560262 31560276 -117956761 + ID_B1 SINE B4 210 223 -1 1 825 251 93 0 23 chr6 31560361 31560405 -117956632 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 825 1193 130 145 0 chr6 31560424 31560631 -117956406 - Lx5 LINE L1 -138 6912 6676 1 825 267 341 60 27 chr6 31560883 31561067 -117955970 + LTR33 LTR ERVL 320 509 -6 1 825 234 0 0 0 chr6 31561303 31561329 -117955708 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 825 324 0 0 0 chr6 31561329 31561364 -117955673 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 825 618 39 0 0 chr6 31561364 31561440 -117955597 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 825 1283 204 104 56 chr6 31561470 31561807 -117955230 + RMER15 LTR ERVL 221 573 -2 1 825 489 288 105 45 chr6 31561864 31561963 -117955074 + Charlie1 DNA MER1_type 2296 2400 -381 1 825 804 218 7 13 chr6 31561963 31562112 -117954925 - B1F SINE Alu -1 148 1 1 825 489 288 105 45 chr6 31562112 31562309 -117954728 + Charlie1 DNA MER1_type 2401 2614 -167 1 825 1238 34 7 0 chr6 31562309 31562455 -117954582 - B1_Mm SINE Alu 0 147 1 1 825 489 288 105 45 chr6 31562455 31562491 -117954546 + Charlie1 DNA MER1_type 2615 2648 -133 1 825 250 283 0 0 chr6 31562512 31562572 -117954465 + B3A SINE B2 1 60 -138 1 825 22 0 0 0 chr6 31562612 31562634 -117954403 + AT_rich Low_complexity Low_complexity 1 22 0 1 825 584 262 85 20 chr6 31562703 31562902 -117954135 - B3 SINE B2 -3 213 2 1 825 381 118 13 0 chr6 31565103 31565179 -117951858 - Lx4A LINE L1 0 7058 6982 1 825 654 121 32 0 chr6 31565203 31565327 -117951710 + (CCTA)n Simple_repeat Simple_repeat 3 130 0 1 825 622 239 193 0 chr6 31565327 31565503 -117951534 - ID_B1 SINE B4 -11 213 4 1 825 447 187 223 45 chr6 31566001 31566113 -117950924 - RSINE1 SINE B4 -20 145 14 1 825 485 146 12 0 chr6 31566186 31566268 -117950769 - B1_Mus2 SINE Alu 0 147 65 1 825 204 388 0 0 chr6 31566692 31566759 -117950278 + MER5B DNA MER1_type 50 116 -62 1 825 499 222 0 49 chr6 31566908 31567031 -117950006 + PB1D10 SINE Alu 1 117 0 1 825 235 300 0 0 chr6 31567051 31567101 -117949936 + ID4_ SINE ID 34 83 0 1 825 204 47 0 179 chr6 31568056 31568134 -117948903 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 1 825 480 220 73 9 chr6 31569563 31569673 -117947364 - ID_B1 SINE B4 -1 223 107 1 825 328 243 26 26 chr6 31569944 31570020 -117947017 - L2a LINE L2 -5 3421 3346 1 825 214 308 13 13 chr6 31570117 31570196 -117946841 + BC1_Mm scRNA scRNA 2 80 -72 1 825 225 315 0 27 chr6 31570369 31570444 -117946593 + ID4_ SINE ID 1 73 -10 1 825 1117 78 53 23 chr6 31570452 31570623 -117946414 + B2_Mm2 SINE B2 11 186 -9 1 825 374 247 166 0 chr6 31570617 31570726 -117946311 + B4 SINE B4 81 214 -78 1 825 1266 219 37 30 chr6 31571666 31571934 -117945103 + B4 SINE B4 19 288 -4 1 825 1038 206 26 11 chr6 31572112 31572303 -117944734 + B3 SINE B2 1 194 -22 1 825 1192 69 0 7 chr6 31572331 31572477 -117944560 - B1_Mus2 SINE Alu -1 146 2 1 825 21 57 0 0 chr6 31572490 31572525 -117944512 + AT_rich Low_complexity Low_complexity 1 35 0 1 825 198 0 0 0 chr6 31572527 31572549 -117944488 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 1 825 536 296 75 51 chr6 31572643 31572978 -117944059 + MTEb LTR MaLR 7 379 0 1 825 977 174 53 12 chr6 31573107 31573276 -117943761 - B3 SINE B2 -28 188 13 1 825 507 326 0 14 chr6 31574939 31575082 -117941955 + RSINE1 SINE B4 3 143 -22 1 825 556 256 0 24 chr6 31575143 31575267 -117941770 + B1F2 SINE Alu 9 129 -20 1 825 618 97 0 26 chr6 31575481 31575597 -117941440 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 1 825 924 168 0 14 chr6 31575598 31575743 -117941294 - B1_Mur4 SINE Alu -6 144 2 1 825 475 312 78 0 chr6 31575938 31576066 -117940971 - ID_B1 SINE B4 0 224 87 1 825 1148 233 5 0 chr6 31576186 31576401 -117940636 - B3 SINE B2 0 216 1 1 825 1059 246 9 9 chr6 31576549 31576770 -117940267 + ID_B1 SINE B4 2 222 -2 1 825 236 324 106 18 chr6 31576787 31576900 -117940137 - MIR SINE MIR -121 141 19 2 825 249 211 18 0 chr6 31576908 31576965 -117940072 + CT-rich Low_complexity Low_complexity 2 59 0 2 825 1298 67 0 16 chr6 31576975 31577158 -117939879 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 2 825 306 239 85 13 chr6 31577168 31577265 -117939772 - PB1D10 SINE Alu -1 119 15 2 825 288 265 40 89 chr6 31578672 31578695 -117938342 + MT2B LTR ERVL 140 156 -445 2 825 500 266 24 8 chr6 31578695 31578820 -117938217 + B1F1 SINE Alu 2 128 -21 2 825 262 242 46 29 chr6 31578834 31578923 -117938114 + ID4 SINE ID 7 100 -52 2 825 237 259 180 27 chr6 31579141 31579252 -117937785 - MIR3 SINE MIR 0 208 81 2 825 1560 31 0 59 chr6 31580756 31580960 -117936077 + B2_Mm1a SINE B2 2 193 0 2 825 673 235 188 0 chr6 31581302 31581472 -117935565 - ID_B1 SINE B4 -7 217 16 2 825 577 179 94 31 chr6 31581637 31581764 -117935273 + B1_Mur3 SINE Alu 2 136 -13 2 825 1159 95 6 11 chr6 31581771 31581952 -117935085 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 825 180 213 20 41 chr6 31583007 31583056 -117933981 + L2b LINE L2 2826 2873 -546 2 825 1140 59 0 0 chr6 31583113 31583249 -117933788 + B1_Mus1 SINE Alu 1 136 -12 2 825 228 365 78 53 chr6 31583383 31583626 -117933411 + L2b LINE L2 3105 3353 -22 2 825 1047 135 0 0 chr6 31583818 31583988 -117933049 + (TCTCCC)n Simple_repeat Simple_repeat 5 174 0 2 825 1220 35 7 0 chr6 31583991 31584134 -117932903 - B1_Mus1 SINE Alu 0 148 5 2 825 180 0 0 0 chr6 31584134 31584154 -117932883 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 825 407 218 0 106 chr6 31584208 31584321 -117932716 + MT2B LTR ERVL 157 257 -344 2 825 938 163 0 14 chr6 31584225 31584368 -117932669 + B1_Mur4 SINE Alu 10 150 0 2 825 26 0 0 0 chr6 31584368 31584394 -117932643 + AT_rich Low_complexity Low_complexity 1 26 0 2 825 364 275 200 19 chr6 31584426 31584641 -117932396 - L1MB3 LINE L1 -7 6176 5923 2 825 762 174 56 0 chr6 31584780 31584924 -117932113 - Lx9 LINE L1 -174 7470 7319 2 825 345 208 20 40 chr6 31584922 31585022 -117932015 - Lx9 LINE L1 -658 6986 6889 2 825 472 229 136 8 chr6 31585023 31585155 -117931882 - PB1 SINE Alu 0 149 1 2 825 277 219 96 0 chr6 31585162 31585235 -117931802 - L1MB3 LINE L1 -288 5895 5816 2 825 1284 231 69 24 chr6 31585243 31585575 -117931462 - ORR1E LTR MaLR 0 359 13 2 825 274 167 64 0 chr6 31585786 31585864 -117931173 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 825 255 271 12 0 chr6 31585864 31585949 -117931088 + L1MB3 LINE L1 5868 5953 -230 2 825 214 143 95 0 chr6 31586003 31586045 -117930992 - PB1D10 SINE Alu -7 110 65 2 825 432 0 0 0 chr6 31586052 31586100 -117930937 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 2 825 399 165 0 0 chr6 31586103 31586188 -117930849 + (TG)n Simple_repeat Simple_repeat 1 85 0 2 825 688 289 40 76 chr6 31586188 31586491 -117930546 - B4A SINE B4 0 292 1 2 825 268 347 40 62 chr6 31587627 31587854 -117929183 - L1MB3 LINE L1 -205 5978 5757 2 825 243 0 0 0 chr6 31588114 31588141 -117928896 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 826 360 0 0 0 chr6 31589721 31589761 -117927276 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 826 1049 231 19 9 chr6 31590267 31590481 -117926556 - B3 SINE B2 0 216 1 2 826 296 224 93 12 chr6 31591177 31591263 -117925774 - PB1D10 SINE Alu -1 116 24 2 826 536 209 29 0 chr6 31591298 31591403 -117925634 - B1_Mur1 SINE Alu 0 149 42 2 826 1252 175 10 20 chr6 31591469 31591673 -117925364 - B3 SINE B2 -14 202 1 2 826 312 331 111 15 chr6 31591703 31591838 -117925199 + MER106B DNA MER1_type 896 1043 -16 2 826 303 28 0 0 chr6 31591889 31591925 -117925112 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 2 826 301 243 30 122 chr6 31592077 31592092 -117924945 + CYRA11_Mm Unknown Y-chromosome 161 163 -454 2 826 684 144 286 51 chr6 31592092 31592267 -117924770 - URR1B DNA MER1_type 0 225 10 2 826 643 195 48 8 chr6 31592959 31593083 -117923954 + RSINE1 SINE B4 2 130 -35 2 826 187 278 74 0 chr6 31593250 31593304 -117923733 + MER5B DNA MER1_type 55 112 -66 2 826 664 186 39 39 chr6 31593312 31593441 -117923596 - RSINE1 SINE B4 -35 130 2 2 826 813 233 21 114 chr6 31593461 31593587 -117923450 - B3 SINE B2 -1 215 88 2 826 888 154 68 47 chr6 31593587 31593778 -117923259 + B2_Mm2 SINE B2 1 195 0 2 826 813 233 21 114 chr6 31593778 31593866 -117923171 - B3 SINE B2 -129 87 20 2 826 3194 26 63 0 chr6 31593866 31594249 -117922788 + IAPLTR2a LTR ERVK 5 411 0 2 826 813 233 21 114 chr6 31594249 31594270 -117922767 - B3 SINE B2 -197 19 1 2 826 216 0 0 0 chr6 31594298 31594322 -117922715 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 826 716 207 28 14 chr6 31594326 31594468 -117922569 - B3A SINE B2 -54 144 1 2 826 616 291 81 5 chr6 31595090 31595287 -117921750 - ID_B1 SINE B4 -6 218 7 2 826 432 0 0 0 chr6 31596111 31596159 -117920878 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 826 303 28 0 0 chr6 31596159 31596194 -117920843 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 826 609 285 0 42 chr6 31596194 31596337 -117920700 - B3 SINE B2 -63 153 17 2 826 477 92 0 0 chr6 31596337 31596413 -117920624 + (CCCCAG)n Simple_repeat Simple_repeat 3 78 0 2 826 221 353 150 0 chr6 31596899 31597052 -117919985 + MIRc SINE MIR 73 248 -20 2 826 326 25 34 91 chr6 31597412 31597500 -117919537 + (TCTA)n Simple_repeat Simple_repeat 1 83 0 2 826 741 322 56 22 chr6 31597540 31597861 -117919176 - MLT2D LTR ERVL -56 358 27 2 826 225 288 51 0 chr6 31597846 31597905 -117919132 + ZP3AR Satellite Satellite 11 72 -140 2 826 288 204 0 0 chr6 31597882 31597931 -117919106 + tRNA-Ala-GCY_ tRNA tRNA 2 50 -25 2 826 255 304 0 0 chr6 31597931 31597949 -117919088 + ID4 SINE ID 17 74 -9 2 826 3131 57 2 35 chr6 31598468 31598871 -117918166 - RLTR10 LTR ERVK 0 390 1 2 826 242 325 63 71 chr6 31598940 31599066 -117917971 + LTR78 LTR ERV1 835 959 -345 2 826 850 297 104 18 chr6 31599950 31600456 -117916581 - Charlie2b DNA MER1_type -17 2765 2194 2 826 502 320 42 55 chr6 31600468 31600779 -117916258 - Charlie2b DNA MER1_type -662 2120 1814 2 826 307 282 0 29 chr6 31600815 31600907 -117916130 + ID4 SINE ID 13 101 -51 2 826 180 250 19 19 chr6 31601157 31601210 -117915827 - L2b LINE L2 -220 3155 3103 2 826 329 341 63 11 chr6 31601261 31601436 -117915601 - MIR SINE MIR -29 233 50 2 826 218 265 8 0 chr6 31601655 31601772 -117915265 + (ATG)n Simple_repeat Simple_repeat 1 118 0 2 826 201 213 0 0 chr6 31601876 31601923 -117915114 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 826 216 256 0 0 chr6 31601962 31602005 -117915032 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 826 1448 68 11 0 chr6 31602075 31602265 -117914772 - B2_Mm1t SINE B2 0 193 2 2 826 369 310 0 110 chr6 31602285 31602448 -117914589 - B3 SINE B2 -5 211 67 2 826 996 312 40 70 chr6 31602457 31602884 -117914153 + MTD LTR MaLR 6 419 0 2 826 556 301 96 6 chr6 31602970 31603147 -117913890 - B4 SINE B4 -89 203 11 2 826 281 340 33 80 chr6 31603316 31603466 -117913571 - L3 LINE CR1 -422 4067 3925 2 826 331 344 31 25 chr6 31603514 31603675 -117913362 - L3 LINE CR1 -675 3814 3653 2 826 207 0 0 0 chr6 31603824 31603847 -117913190 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 826 192 40 0 0 chr6 31603886 31603911 -117913126 + (ATATG)n Simple_repeat Simple_repeat 4 28 0 2 826 254 286 119 56 chr6 31603912 31604038 -117912999 - LTR82B Low_complexity ERVL -141 689 556 2 826 1017 267 44 27 chr6 31604068 31604453 -117912584 + RLTR11A LTR ERVK 175 569 -8 2 826 1221 66 0 0 chr6 31604577 31604728 -117912309 + B2_Mm2 SINE B2 1 151 -44 2 826 431 300 80 61 chr6 31604827 31605090 -117911947 - LTR82B Low_complexity ERVL -537 293 26 2 826 288 221 10 148 chr6 31605844 31605945 -117911092 + MT2B LTR ERVL 164 250 -351 2 826 650 129 8 8 chr6 31605855 31605956 -117911081 + B1_Mur4 SINE Alu 9 115 -12 2 826 342 0 0 0 chr6 31605956 31605994 -117911043 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 2 826 447 187 78 78 chr6 31605994 31606009 -117911028 + PB1 SINE Alu 116 124 -3 2 826 831 243 11 22 chr6 31606202 31606383 -117910654 + B3A SINE B2 2 180 -18 2 826 847 177 7 7 chr6 31606528 31606676 -117910361 + B1_Mur1 SINE Alu 1 148 -1 2 826 507 319 17 63 chr6 31607267 31607441 -117909596 + B4 SINE B4 3 168 -124 2 826 274 274 9 120 chr6 31607501 31607523 -117909514 - MT2B LTR ERVL -350 251 195 2 826 496 164 0 0 chr6 31607523 31607596 -117909441 - PB1D9 SINE Alu -43 77 5 2 826 274 274 9 120 chr6 31607596 31607609 -117909428 - MT2B LTR ERVL -350 194 156 2 826 2189 185 10 25 chr6 31607605 31608010 -117909027 + MTD LTR MaLR 13 411 -8 2 826 207 0 0 0 chr6 31608018 31608041 -117908996 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 826 312 342 0 0 chr6 31608056 31608129 -117908908 + B4 SINE B4 217 289 -3 2 826 220 232 18 18 chr6 31608495 31608552 -117908485 + L2a LINE L2 3359 3415 -11 2 826 432 0 0 0 chr6 31609217 31609265 -117907772 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 826 450 0 0 0 chr6 31609265 31609314 -117907723 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 826 961 244 33 9 chr6 31609454 31609665 -117907372 - B3 SINE B2 0 216 1 2 826 855 250 84 14 chr6 31609665 31609880 -117907157 - B4A SINE B4 -62 230 1 2 826 195 42 0 0 chr6 31610196 31610220 -117906817 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 2 826 3474 200 37 30 chr6 31611702 31611832 -117905205 - RMER1C Other Other 0 1342 1209 2 826 1068 133 0 0 chr6 31611832 31612012 -117905025 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 826 3474 200 37 30 chr6 31612012 31612607 -117904430 - RMER1C Other Other -134 1208 612 2 826 3286 183 103 52 chr6 31612703 31613522 -117903515 + RMER13A LTR ERVK 1 860 0 2 826 378 0 0 0 chr6 31615474 31615516 -117901521 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 826 207 0 0 0 chr6 31616506 31616529 -117900508 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 826 390 91 0 0 chr6 31616529 31616584 -117900453 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 826 181 139 0 44 chr6 31617146 31617191 -117899846 + CT-rich Low_complexity Low_complexity 4 46 0 3 826 415 244 0 12 chr6 31617227 31617310 -117899727 - ID4_ SINE ID -1 82 1 3 826 251 157 0 19 chr6 31617317 31617369 -117899668 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 826 922 251 63 0 chr6 31617392 31617647 -117899390 - B4A SINE B4 -18 274 4 3 826 361 348 18 48 chr6 31617946 31618112 -117898925 - MIRb SINE MIR -34 234 74 3 826 1294 169 14 0 chr6 31618194 31618407 -117898630 - B3 SINE B2 0 216 1 3 826 352 277 88 41 chr6 31618475 31618622 -117898415 + RSINE1 SINE B4 4 157 -8 3 826 241 267 0 48 chr6 31618658 31618721 -117898316 + B4A SINE B4 86 145 -147 3 826 364 318 23 50 chr6 31618665 31618810 -117898227 + PB1D10 SINE Alu 8 144 -3 3 826 231 376 11 21 chr6 31618808 31618903 -117898134 - Charlie16a DNA MER1_type -183 159 66 3 826 217 289 21 43 chr6 31619540 31619634 -117897403 - L2a LINE L2 -24 3402 3311 3 826 249 300 9 107 chr6 31619643 31619755 -117897282 + RMER12 LTR ERVK 750 850 -472 3 826 313 338 31 12 chr6 31619867 31620029 -117897008 + L1MEg LINE L1 1208 1372 -4712 3 826 217 250 33 0 chr6 31620081 31620141 -117896896 + ID SINE ID 23 84 -140 3 826 300 154 0 0 chr6 31620696 31620748 -117896289 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 3 826 541 273 31 31 chr6 31622075 31622268 -117894769 - L1MEg LINE L1 -1521 4625 4433 3 826 286 264 41 13 chr6 31622287 31622373 -117894664 + B1F2 SINE Alu 2 91 -56 3 826 212 250 31 15 chr6 31622378 31622443 -117894594 + ID4 SINE ID 1 66 -17 3 826 443 335 52 52 chr6 31622451 31622692 -117894345 - L1MEg LINE L1 -1752 4394 4154 3 826 279 167 76 0 chr6 31622779 31622845 -117894192 + L1MD LINE L1 4970 5040 -1106 3 826 343 270 25 32 chr6 31623394 31623551 -117893486 + L1MD LINE L1 5084 5239 -907 3 826 189 0 0 0 chr6 31623551 31623572 -117893465 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 826 180 111 0 0 chr6 31623574 31623601 -117893436 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 826 1175 102 6 0 chr6 31623702 31623879 -117893158 + (TA)n Simple_repeat Simple_repeat 1 178 0 3 826 233 182 0 18 chr6 31623880 31623936 -117893101 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 3 826 538 281 140 40 chr6 31623937 31624289 -117892748 + L1MD LINE L1 5237 5628 -552 3 826 477 0 0 0 chr6 31624313 31624366 -117892671 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 826 2507 141 88 127 chr6 31624702 31625294 -117891743 - RMER4B LTR ERVK 0 585 17 3 826 325 279 68 96 chr6 31625694 31625971 -117891066 - L1MEg LINE L1 -3799 2367 2090 3 826 773 180 57 7 chr6 31625982 31626122 -117890915 - B1_Mur2 SINE Alu -2 147 1 3 826 211 28 0 53 chr6 31626129 31626167 -117890870 + (TTG)n Simple_repeat Simple_repeat 2 37 0 3 826 626 281 0 0 chr6 31626167 31626306 -117890731 - B1F SINE Alu -10 139 1 3 826 423 266 18 0 chr6 31626317 31626426 -117890611 - PB1D10 SINE Alu -6 111 1 3 826 288 0 0 0 chr6 31626477 31626509 -117890528 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 826 554 299 130 27 chr6 31626528 31626789 -117890248 - B4A SINE B4 0 292 5 3 826 480 298 126 53 chr6 31627001 31627606 -117889431 - L1MC5 LINE L1 -202 7759 7111 3 826 497 58 14 0 chr6 31627823 31627892 -117889145 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 826 1032 133 0 0 chr6 31627892 31628072 -117888965 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 3 826 689 243 0 28 chr6 31628230 31628374 -117888663 - RSINE1 SINE B4 -22 143 4 3 826 396 0 0 0 chr6 31628653 31628697 -117888340 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 826 658 285 129 52 chr6 31628822 31629148 -117887889 - ORR1E LTR MaLR -6 353 3 3 826 1826 182 44 47 chr6 31629155 31629540 -117887497 + ORR1C2 LTR MaLR 1 384 0 3 826 1313 221 51 91 chr6 31629806 31629871 -117887166 + MTE2a LTR MaLR 2 73 -306 3 826 351 0 0 0 chr6 31629871 31629910 -117887127 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 826 1313 221 51 91 chr6 31629910 31630238 -117886799 + MTE2a LTR MaLR 74 378 -1 3 826 1253 280 44 9 chr6 31630295 31630727 -117886310 - L1MC5 LINE L1 -2059 5823 5377 3 826 635 99 10 0 chr6 31630772 31630873 -117886164 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 826 809 253 0 16 chr6 31630874 31631059 -117885978 - B3A SINE B2 -16 182 1 3 826 439 186 0 19 chr6 31631077 31631181 -117885856 + CT-rich Low_complexity Low_complexity 2 103 0 3 826 712 301 94 20 chr6 31631217 31631655 -117885382 - L1M4 LINE L1 -842 5304 4835 3 826 279 261 85 14 chr6 31631693 31631858 -117885179 - L1M4 LINE L1 -1799 4347 4166 3 826 237 194 18 64 chr6 31631882 31631954 -117885083 - BC1_Mm scRNA scRNA -80 72 2 3 826 318 293 40 84 chr6 31631957 31632212 -117884825 - L1M4 LINE L1 -1961 4185 3952 3 826 212 122 24 0 chr6 31632229 31632270 -117884767 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 3 826 679 243 43 7 chr6 31632282 31632423 -117884614 - RSINE1 SINE B4 -7 158 13 3 826 349 348 136 24 chr6 31632438 31632688 -117884349 - L1MC5 LINE L1 -2204 3942 3665 3 826 7587 49 25 2 chr6 31633665 31634903 -117882134 + L1Md_F2 LINE L1 5281 6547 -35 3 826 22 0 0 0 chr6 31634903 31634925 -117882112 + AT_rich Low_complexity Low_complexity 1 22 0 3 826 213 39 0 0 chr6 31635519 31635545 -117881492 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 826 1735 175 128 0 chr6 31635626 31635992 -117881045 - MTC LTR MaLR -8 413 1 3 826 562 261 14 21 chr6 31636025 31636170 -117880867 - RSINE1 SINE B4 -19 146 3 3 826 260 288 96 0 chr6 31636532 31636605 -117880432 - ID4_ SINE ID -1 82 3 3 826 285 257 87 43 chr6 31636690 31636886 -117880151 - L1M4 LINE L1 -3156 2990 2780 3 826 1032 120 67 28 chr6 31637419 31637599 -117879438 + B2_Mm2 SINE B2 1 187 -8 3 826 324 48 0 0 chr6 31637627 31637669 -117879368 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 826 723 237 7 0 chr6 31637673 31637812 -117879225 - RSINE1 SINE B4 -14 151 12 3 826 1079 97 0 0 chr6 31637987 31638131 -117878906 + B1_Mm SINE Alu 2 145 -2 3 826 2544 292 52 56 chr6 31638596 31639602 -117877435 + RMER1C Other Other 172 1037 -305 3 826 566 358 64 24 chr6 31639953 31640282 -117876755 - L2 LINE L2 -596 2823 2482 3 826 1376 264 52 33 chr6 31640290 31640655 -117876382 + MTEb LTR MaLR 1 372 -7 3 826 207 239 0 0 chr6 31640658 31640704 -117876333 - L2 LINE L2 -939 2480 2435 3 826 243 0 0 0 chr6 31640866 31640893 -117876144 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 826 1176 223 54 111 chr6 31640897 31641265 -117875772 - ORR1E LTR MaLR -10 349 3 3 826 638 227 23 23 chr6 31642500 31642631 -117874406 + RSINE1 SINE B4 5 135 -30 3 826 663 268 0 0 chr6 31642717 31642859 -117874178 + B1F SINE Alu 1 142 -7 3 826 282 56 0 0 chr6 31643509 31643545 -117873492 + (GGA)n Simple_repeat Simple_repeat 3 38 0 3 826 504 32 0 0 chr6 31643545 31643607 -117873430 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 826 957 246 65 0 chr6 31646239 31646438 -117870599 - B3 SINE B2 0 216 5 3 826 246 174 0 0 chr6 31646829 31646875 -117870162 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 826 367 305 94 31 chr6 31646978 31647262 -117869775 - L2c LINE L2 -154 3221 2921 3 826 2343 153 67 0 chr6 31648334 31648725 -117868312 - MTC LTR MaLR 0 421 5 3 826 2237 84 6 50 chr6 31648922 31649259 -117867778 + RLTRETN_Mm LTR ERVK 1 322 0 3 826 227 227 73 110 chr6 31649595 31649704 -117867333 - Charlie18a DNA MER1_type -104 238 134 3 826 800 245 123 90 chr6 31650173 31650483 -117866554 - MTEa LTR MaLR -9 370 51 3 826 571 237 208 33 chr6 31650523 31650558 -117866479 - B3 SINE B2 -1 215 186 3 826 387 0 0 0 chr6 31650558 31650601 -117866436 + (TATG)n Simple_repeat Simple_repeat 4 46 0 3 826 571 237 208 33 chr6 31650601 31650748 -117866289 - B3 SINE B2 -31 185 1 3 826 260 255 153 45 chr6 31651450 31651561 -117865476 + MIRb SINE MIR 34 156 -112 3 826 712 278 4 44 chr6 31652001 31652227 -117864810 - ID_B1 SINE B4 -7 217 1 3 826 638 273 159 81 chr6 31652475 31652746 -117864291 + B4A SINE B4 1 292 0 3 826 354 45 0 0 chr6 31652768 31652812 -117864225 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 826 558 47 35 0 chr6 31652812 31652898 -117864139 + (GA)n Simple_repeat Simple_repeat 1 89 0 3 826 196 100 50 0 chr6 31653777 31653817 -117863220 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 3 826 611 288 104 35 chr6 31653862 31653922 -117863115 - B3A SINE B2 0 216 153 3 826 816 79 0 0 chr6 31653922 31654048 -117862989 + (TC)n Simple_repeat Simple_repeat 2 127 0 3 826 270 0 0 0 chr6 31654048 31654077 -117862960 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 826 611 270 111 17 chr6 31654077 31654223 -117862814 - B3A SINE B2 -33 165 2 3 826 647 233 7 43 chr6 31654231 31654370 -117862667 - ID_B1 SINE B4 -7 217 84 3 826 362 294 28 56 chr6 31655136 31655244 -117861793 + ID_B1 SINE B4 90 194 -30 3 826 689 250 168 5 chr6 31655301 31655486 -117861551 - B3 SINE B2 0 216 2 3 826 1101 90 0 0 chr6 31655622 31655777 -117861260 + (TTC)n Simple_repeat Simple_repeat 3 157 0 3 826 1156 136 16 16 chr6 31655777 31655955 -117861082 - B2_Mm1t SINE B2 -12 181 2 3 826 1123 64 0 13 chr6 31655964 31656123 -117860914 + (TTCTC)n Simple_repeat Simple_repeat 4 160 0 3 826 1040 98 0 0 chr6 31656129 31656262 -117860775 - B1_Mus1 SINE Alu -14 134 2 3 826 244 236 41 172 chr6 31656338 31656507 -117860530 - MT2B2 LTR ERVL -288 296 150 3 826 356 247 44 22 chr6 31658072 31658163 -117858874 - MTEa LTR MaLR 0 379 287 3 826 2069 155 51 43 chr6 31658163 31658554 -117858483 + ORR1B1 LTR MaLR 1 394 0 3 826 2986 176 76 10 chr6 31658554 31659134 -117857903 + ORR1B1-int LTR MaLR 1 618 -891 3 826 289 219 24 0 chr6 31659177 31659259 -117857778 - L1MC LINE L1 -2420 3726 3643 3 826 1127 50 50 0 chr6 31659260 31659400 -117857637 + B1_Mus2 SINE Alu 1 147 0 3 826 229 130 22 0 chr6 31659404 31659450 -117857587 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 826 1988 138 18 42 chr6 31659483 31659817 -117857220 + ORR1B1 LTR MaLR 1 326 0 3 826 710 306 0 0 chr6 31659841 31660096 -117856941 - L1M2 LINE L1 -2295 4287 4033 3 826 1064 170 11 27 chr6 31660099 31660286 -117856751 + MTB_Mm LTR MaLR 9 192 -215 4 826 700 100 0 0 chr6 31660288 31660388 -117856649 - Lx LINE L1 -1250 4633 4534 4 826 7619 119 20 2 chr6 31660390 31662341 -117854696 + Lx LINE L1 4659 6648 -6 4 826 1128 204 40 5 chr6 31662344 31662566 -117854471 + MTB_Mm LTR MaLR 178 407 0 4 826 601 253 29 21 chr6 31662587 31662880 -117854157 - L1M2 LINE L1 -2805 4040 3756 3 826 399 41 0 0 chr6 31662884 31662933 -117854104 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 826 383 217 49 24 chr6 31662939 31663059 -117853978 - B3A SINE B2 -34 164 2 4 826 3102 300 47 47 chr6 31663059 31664117 -117852920 - L1M2 LINE L1 -2820 3729 2693 3 826 1058 172 113 0 chr6 31664117 31664320 -117852717 - URR1A DNA MER1_type 0 226 1 4 826 3102 303 56 46 chr6 31664320 31665247 -117851790 - L1M2 LINE L1 -3857 2692 1634 3 826 507 33 0 0 chr6 31665770 31665831 -117851206 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 826 181 373 34 34 chr6 31666409 31666556 -117850481 - L2a LINE L2 -95 3331 3185 4 826 1186 267 17 17 chr6 31666631 31666921 -117850116 + B4A SINE B4 1 290 -2 4 826 660 200 0 0 chr6 31666963 31667143 -117849894 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 826 209 284 149 0 chr6 31667172 31667246 -117849791 - L2a LINE L2 -356 3063 2979 4 826 230 185 19 0 chr6 31669061 31669115 -117847922 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 4 826 253 276 78 13 chr6 31670552 31670629 -117846408 - L1MEg2 LINE L1 -5685 767 686 4 826 239 247 38 25 chr6 31670853 31670932 -117846105 + MLT1K LTR MaLR 204 283 -312 4 826 297 305 68 38 chr6 31671663 31671796 -117845241 + MLT1I LTR MaLR 2 138 -273 4 826 601 272 82 8 chr6 31671964 31672220 -117844817 - L1MC LINE L1 -1619 4527 4253 4 826 620 289 26 0 chr6 31672259 31672411 -117844626 - RSINE1 SINE B4 -8 157 2 4 826 460 289 84 16 chr6 31672669 31672919 -117844118 - L1MC LINE L1 -2039 4107 3841 4 826 703 173 364 27 chr6 31672976 31673267 -117843770 - RMER6B LTR ERVK -2 459 70 4 826 2984 163 8 2 chr6 31673267 31673735 -117843302 + Lx5 LINE L1 6319 6789 -261 4 826 604 146 45 0 chr6 31673736 31673846 -117843191 - RMER6B LTR ERVK -344 117 3 4 826 480 248 67 0 chr6 31673848 31673953 -117843084 - B1_Mus2 SINE Alu -33 114 3 4 826 759 273 85 32 chr6 31673962 31674501 -117842536 - L1MC LINE L1 -2320 3826 3230 4 826 451 192 323 0 chr6 31674501 31674662 -117842375 - B3 SINE B2 0 216 4 4 826 759 269 85 55 chr6 31674662 31674874 -117842163 - L1MC LINE L1 -2917 3229 3028 4 826 427 196 32 0 chr6 31674881 31675039 -117841998 + (TG)n Simple_repeat Simple_repeat 1 163 0 4 826 320 206 28 0 chr6 31675061 31675202 -117841835 + (TG)n Simple_repeat Simple_repeat 2 146 0 4 826 444 198 9 28 chr6 31675213 31675429 -117841608 + (TG)n Simple_repeat Simple_repeat 1 211 0 4 826 377 322 0 8 chr6 31675429 31675551 -117841486 - ID_B1 SINE B4 -8 216 96 4 826 21 0 0 0 chr6 31676139 31676160 -117840877 + AT_rich Low_complexity Low_complexity 1 21 0 4 826 894 125 0 0 chr6 31676384 31676560 -117840477 + (TTC)n Simple_repeat Simple_repeat 3 178 0 4 826 1025 113 0 6 chr6 31676561 31676730 -117840307 + (TCC)n Simple_repeat Simple_repeat 2 169 0 4 826 786 125 59 53 chr6 31676737 31676906 -117840131 - B2_Mm2 SINE B2 -24 171 2 4 826 358 329 42 42 chr6 31677158 31677326 -117839711 - MLT1N2 LTR MaLR -7 555 388 4 826 204 231 0 0 chr6 31677438 31677490 -117839547 + A-rich Low_complexity Low_complexity 1 52 0 4 826 182 330 42 21 chr6 31677994 31678090 -117838947 + L2a LINE L2 3327 3424 -2 4 826 189 335 51 51 chr6 31678584 31678760 -117838277 + L2a LINE L2 3022 3197 -229 4 826 263 104 21 0 chr6 31678865 31678913 -117838124 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 826 688 303 17 59 chr6 31678925 31679213 -117837824 - B4A SINE B4 -16 276 1 4 826 229 210 63 16 chr6 31679245 31679308 -117837729 - MIR SINE MIR -85 123 58 4 826 396 0 0 0 chr6 31679515 31679559 -117837478 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 826 212 255 0 19 chr6 31682261 31682313 -117834724 + CT-rich Low_complexity Low_complexity 1 51 0 4 826 454 184 11 0 chr6 31682321 31682408 -117834629 - PB1D7 SINE Alu -6 114 27 4 826 392 316 64 116 chr6 31683381 31683725 -117833312 - MLT1A0 LTR MaLR -38 327 2 4 826 228 67 0 0 chr6 31684407 31684437 -117832600 + (TCG)n Simple_repeat Simple_repeat 2 31 0 4 826 558 310 67 54 chr6 31684621 31684918 -117832119 + MER33 DNA MER1_type 1 301 -23 4 826 2694 129 181 2 chr6 31686807 31687303 -117829734 + RMER4B LTR ERVK 1 585 0 4 826 768 247 157 50 chr6 31688248 31688585 -117828452 - MTEb LTR MaLR -4 375 3 4 826 6282 38 0 0 chr6 31689172 31689907 -117827130 - L1Md_T LINE L1 0 6582 5848 4 826 237 132 0 0 chr6 31690086 31690124 -117826913 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 4 826 579 238 84 19 chr6 31690142 31690296 -117826741 - RSINE1 SINE B4 0 165 2 4 826 3047 287 92 30 chr6 31690298 31692031 -117825006 - L1MEf LINE L1 -3823 2714 862 4 826 2451 93 9 0 chr6 31692096 31692420 -117824617 + ORR1A2 LTR MaLR 1 327 0 4 826 1423 239 63 0 chr6 31692919 31693270 -117823767 + MTEb LTR MaLR 1 373 -6 4 826 271 297 60 64 chr6 31693463 31693755 -117823282 + L1_Mur2 LINE L1 4538 4831 -1315 4 826 358 263 118 71 chr6 31694880 31695007 -117822030 - ID_B1 SINE B4 -5 219 87 4 826 258 318 23 0 chr6 31695244 31695332 -117821705 - MER5A1 DNA MER1_type -29 137 48 4 826 250 203 5 47 chr6 31696307 31696451 -117820586 + GA-rich Low_complexity Low_complexity 1 137 0 4 826 463 273 96 39 chr6 31697153 31697382 -117819655 - L1M5 LINE L1 -912 5234 4993 4 826 731 239 0 0 chr6 31697385 31697523 -117819514 + B1_Mur1 SINE Alu 2 139 -10 4 826 311 65 0 21 chr6 31697524 31697571 -117819466 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 4 826 226 224 214 8 chr6 31697610 31697736 -117819301 - L1MC LINE L1 -1388 4758 4607 4 826 226 276 21 84 chr6 31697973 31698068 -117818969 - L1M5 LINE L1 -1498 4648 4560 4 826 378 0 0 0 chr6 31698125 31698167 -117818870 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 826 347 269 0 11 chr6 31698239 31698333 -117818704 - L1M5 LINE L1 -1773 4373 4281 4 826 22 35 0 0 chr6 31700321 31700350 -117816687 + AT_rich Low_complexity Low_complexity 1 29 0 4 826 568 191 58 5 chr6 31700362 31700487 -117816550 + B3A SINE B2 1 128 -67 4 826 455 206 0 0 chr6 31700471 31700568 -117816469 - RLTR14 LTR ERV1 -283 99 3 4 826 305 253 126 0 chr6 31700580 31700675 -117816362 - RCHARR1 DNA MER1_type -603 371 265 4 826 246 305 7 58 chr6 31700919 31701058 -117815979 + L1M5 LINE L1 5745 5876 -248 4 826 268 295 114 15 chr6 31701091 31701222 -117815815 + RSINE1 SINE B4 3 146 -19 4 826 1283 311 65 35 chr6 31701351 31702028 -117815009 - L1ME1 LINE L1 -12 6167 5471 4 826 366 175 0 0 chr6 31702029 31702109 -117814928 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 826 463 290 40 40 chr6 31702145 31702321 -117814716 - B4A SINE B4 -35 257 82 4 826 3422 254 50 150 chr6 31702344 31702656 -117814381 - Lx5 LINE L1 -18 7032 6730 4 826 276 30 0 0 chr6 31702656 31702689 -117814348 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 826 477 0 0 0 chr6 31702689 31702741 -117814296 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 826 3422 254 50 150 chr6 31702741 31703482 -117813555 - Lx5 LINE L1 -321 6729 6095 4 826 611 142 5 260 chr6 31703482 31703682 -117813355 - B1_Mur3 SINE Alu 0 149 1 4 826 21220 227 57 108 chr6 31703682 31704041 -117812996 - Lx5 LINE L1 -956 6094 5776 4 826 186 43 0 0 chr6 31704041 31704064 -117812973 + (TTA)n Simple_repeat Simple_repeat 2 24 0 4 826 21220 169 72 21 chr6 31704064 31704863 -117812174 - Lx5 LINE L1 -102 5775 4935 4 826 292 43 0 42 chr6 31704863 31704911 -117812126 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 826 21220 173 68 21 chr6 31704911 31708753 -117808284 - Lx5 LINE L1 -943 4934 892 4 826 306 322 0 11 chr6 31709061 31709149 -117807888 - B4A SINE B4 -203 89 3 4 826 26 0 0 0 chr6 31709166 31709192 -117807845 + AT_rich Low_complexity Low_complexity 1 26 0 4 826 461 226 45 68 chr6 31709255 31709431 -117807606 - L1MB8 LINE L1 -1 6177 6006 4 826 355 257 70 23 chr6 31709438 31709568 -117807469 + ORR1E LTR MaLR 1 136 -234 4 826 238 316 35 17 chr6 31709651 31709767 -117807270 + ORR1E LTR MaLR 255 372 -7 4 826 250 278 22 0 chr6 31709841 31709931 -117807106 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 826 10885 139 17 9 chr6 31710009 31712602 -117804435 - Lx LINE L1 -3 6651 4039 4 826 35704 75 15 3 chr6 31712683 31718642 -117798395 - L1Md_F2 LINE L1 0 6582 560 4 103 16662 91 20 14 chr6 31718642 31721113 -117795924 - Lx LINE L1 -1823 4063 1581 4 827 279 0 0 0 chr6 31721113 31721144 -117795893 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 827 16662 112 25 11 chr6 31721144 31722143 -117794894 - Lx LINE L1 -2324 1590 565 4 827 746 282 164 10 chr6 31722661 31722973 -117794064 + ORR1E LTR MaLR 1 377 -2 4 827 289 22 43 22 chr6 31723923 31723969 -117793068 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 4 827 629 237 7 28 chr6 31724051 31724194 -117792843 + B1F SINE Alu 3 142 -7 4 827 420 208 0 0 chr6 31724343 31724449 -117792588 + CT-rich Low_complexity Low_complexity 2 107 0 4 827 531 320 57 112 chr6 31724499 31724830 -117792207 + MLT1F2 LTR MaLR 238 550 -10 4 827 1276 184 77 48 chr6 31725015 31725093 -117791944 - RMER10A LTR ERVL 0 442 360 4 827 3249 139 97 40 chr6 31725093 31725746 -117791291 - RMER6C LTR ERVK 0 690 1 4 827 1276 184 77 48 chr6 31725746 31726003 -117791034 - RMER10A LTR ERVL -83 359 97 4 827 327 104 0 0 chr6 31727400 31727448 -117789589 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 827 230 189 23 30 chr6 31727450 31727581 -117789456 + (TCTG)n Simple_repeat Simple_repeat 2 131 0 4 827 240 285 29 0 chr6 31727584 31727636 -117789401 + (TCTCTG)n Simple_repeat Simple_repeat 1 53 0 4 827 354 61 0 0 chr6 31727636 31727685 -117789352 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 4 827 240 285 29 0 chr6 31727685 31727769 -117789268 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 4 827 256 197 0 15 chr6 31727690 31727757 -117789280 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 827 473 151 0 8 chr6 31727770 31727890 -117789147 + (TG)n Simple_repeat Simple_repeat 2 120 0 4 827 546 29 0 0 chr6 31727890 31727958 -117789079 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 827 447 258 56 8 chr6 31727962 31728087 -117788950 - B1F SINE Alu -16 133 3 4 827 21 0 0 0 chr6 31729454 31729475 -117787562 + GC_rich Low_complexity Low_complexity 1 21 0 4 827 258 254 0 0 chr6 31730208 31730263 -117786774 + B4A SINE B4 46 100 -192 4 827 1024 90 0 0 chr6 31730268 31730413 -117786624 + B2_Mm2 SINE B2 1 145 -50 4 827 882 76 0 0 chr6 31730413 31730532 -117786505 + (TA)n Simple_repeat Simple_repeat 1 119 0 4 827 639 280 105 11 chr6 31730545 31730736 -117786301 + B4A SINE B4 84 292 0 4 827 315 333 24 24 chr6 31731975 31732141 -117784896 + MIRb SINE MIR 55 220 -48 4 827 1775 178 68 35 chr6 31732972 31733170 -117783867 - ORR1C1 LTR MaLR 0 378 182 4 827 690 13 0 0 chr6 31733170 31733249 -117783788 + (GA)n Simple_repeat Simple_repeat 1 79 0 4 827 1775 178 68 35 chr6 31733249 31733416 -117783621 - ORR1C1 LTR MaLR -197 181 2 4 827 297 75 0 0 chr6 31733954 31733994 -117783043 + (CAT)n Simple_repeat Simple_repeat 2 41 0 4 827 219 139 0 0 chr6 31733994 31734030 -117783007 + (CAA)n Simple_repeat Simple_repeat 3 38 0 5 827 437 284 126 5 chr6 31734036 31734234 -117782803 + ID_B1 SINE B4 2 223 -1 5 827 1298 90 17 11 chr6 31734416 31734596 -117782441 - B2_Mm2 SINE B2 -14 181 1 5 827 2239 15 114 0 chr6 31734719 31734981 -117782056 + RLTR10B LTR ERVK 1 292 0 5 827 655 209 64 14 chr6 31735106 31735247 -117781790 + RSINE1 SINE B4 4 151 -14 5 827 10026 133 5 6 chr6 31737417 31739011 -117778026 - L1_Mur2 LINE L1 -648 5229 3638 5 827 7651 98 10 2 chr6 31739003 31740414 -117776623 + L1_Mus4 LINE L1 5193 6615 -21 5 827 351 0 0 0 chr6 31740414 31740453 -117776584 + (TAA)n Simple_repeat Simple_repeat 2 40 0 5 827 324 0 0 0 chr6 31740550 31740586 -117776451 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 827 300 27 0 0 chr6 31740586 31740622 -117776415 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 827 238 256 42 95 chr6 31741231 31741326 -117775711 - L1MA9 LINE L1 -5 6307 6218 5 827 383 234 0 8 chr6 31741361 31741377 -117775660 + (TG)n Simple_repeat Simple_repeat 1 16 0 5 827 219 36 0 0 chr6 31741377 31741405 -117775632 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 5 827 383 234 0 8 chr6 31741405 31741513 -117775524 + (TG)n Simple_repeat Simple_repeat 1 108 0 5 827 2365 219 50 35 chr6 31741525 31742150 -117774887 - L1MA9 LINE L1 -153 6159 5526 5 827 450 167 0 0 chr6 31742235 31742343 -117774694 + CT-rich Low_complexity Low_complexity 1 108 0 5 827 422 132 0 13 chr6 31742342 31742419 -117774618 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 827 1185 220 89 6 chr6 31742835 31743183 -117773854 - L1MB3 LINE L1 -10 6173 5797 5 827 1657 191 137 24 chr6 31744347 31744728 -117772309 - Lx5 LINE L1 -3 7047 6624 5 827 1891 131 102 6 chr6 31744851 31745203 -117771834 - ORR1B1 LTR MaLR -8 386 1 5 827 333 253 11 22 chr6 31745261 31745350 -117771687 + B4 SINE B4 1 88 -204 5 827 1773 109 135 44 chr6 31745422 31745785 -117771252 + RMER1C Other Other 943 1338 -4 5 827 250 257 20 54 chr6 31745778 31745926 -117771111 + Lx8 LINE L1 7331 7473 0 5 827 330 339 33 8 chr6 31745942 31746064 -117770973 + B4A SINE B4 88 212 -80 5 827 493 237 35 90 chr6 31746069 31746213 -117770824 + B4 SINE B4 106 241 -51 5 827 358 204 56 37 chr6 31746695 31746802 -117770235 + RMER15 LTR ERVL 45 153 -422 5 827 611 222 176 5 chr6 31746836 31747035 -117770002 + RMER15 LTR ERVL 343 575 0 5 827 409 319 152 34 chr6 31747211 31747539 -117769498 - L3 LINE CR1 -674 3815 3449 5 827 575 319 71 60 chr6 31747578 31748393 -117768644 + L1M5 LINE L1 4532 5355 -791 5 827 255 324 29 0 chr6 31748458 31748560 -117768477 + L1M5 LINE L1 5417 5521 -719 5 827 566 274 108 10 chr6 31749093 31749296 -117767741 + MER58A DNA MER1_type 2 224 0 5 827 297 75 0 0 chr6 31749329 31749369 -117767668 + (AGGGGG)n Simple_repeat Simple_repeat 1 40 0 5 827 2344 92 22 19 chr6 31749369 31749735 -117767302 - IAPLTR1_Mm LTR ERVK 0 367 1 5 827 29507 20 1 0 chr6 31749739 31753005 -117764032 - IAPEz-int LTR ERVK -3 6478 3210 5 827 7390 87 101 70 chr6 31753004 31754271 -117762766 - IAPEz-int LTR ERVK -5168 1313 8 5 827 2344 92 22 19 chr6 31754271 31754637 -117762400 - IAPLTR1_Mm LTR ERVK 0 367 1 5 827 511 229 79 69 chr6 31754637 31754839 -117762198 + BGLII_B LTR ERVK 205 408 -33 5 827 612 40 0 0 chr6 31755276 31755351 -117761686 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 827 198 0 0 0 chr6 31755586 31755608 -117761429 + (T)n Simple_repeat Simple_repeat 1 22 0 5 827 23 0 0 0 chr6 31755669 31755692 -117761345 + AT_rich Low_complexity Low_complexity 1 23 0 5 827 556 226 85 30 chr6 31755698 31755862 -117761175 - B3A SINE B2 0 216 44 5 827 546 305 109 50 chr6 31755969 31756428 -117760609 + L1ME5 LINE L1 5557 6042 -152 5 827 701 270 48 16 chr6 31757024 31757212 -117759825 - ID_B1 SINE B4 -29 195 2 5 827 1085 95 4 16 chr6 31758598 31758845 -117758192 + (TG)n Simple_repeat Simple_repeat 1 244 0 5 827 318 373 0 0 chr6 31758873 31758983 -117758054 - PB1D10 SINE Alu -5 112 3 5 827 366 23 0 0 chr6 31759194 31759237 -117757800 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 827 381 228 129 68 chr6 31759244 31759376 -117757661 - B3A SINE B2 -58 140 1 5 827 485 288 78 31 chr6 31760112 31760406 -117756631 - MER67D LTR ERV1 -206 308 1 5 827 360 322 83 17 chr6 31761694 31761874 -117755163 + MIRb SINE MIR 1 192 -76 5 827 209 250 54 107 chr6 31762079 31762191 -117754846 - MIRc SINE MIR -152 116 11 5 827 301 247 84 21 chr6 31762350 31762445 -117754592 + RMER10A LTR ERVL 318 418 -24 5 827 1101 185 14 28 chr6 31762722 31762939 -117754098 + B3 SINE B2 2 215 -1 5 827 732 54 0 0 chr6 31763040 31763133 -117753904 + (GA)n Simple_repeat Simple_repeat 1 93 0 5 827 1208 124 5 26 chr6 31763158 31763348 -117753689 + B2_Mm2 SINE B2 2 187 -8 5 827 1246 83 11 22 chr6 31763348 31763533 -117753504 + B2_Mm1a SINE B2 3 185 -8 5 827 605 241 80 7 chr6 31764063 31764201 -117752836 - B1_Mur1 SINE Alu 0 149 2 5 827 322 280 276 6 chr6 31764333 31764499 -117752538 + MER58A DNA MER1_type 11 221 -3 5 827 1344 226 56 15 chr6 31764548 31764907 -117752130 - MTEb LTR MaLR -12 367 1 5 827 614 203 16 0 chr6 31766134 31766262 -117750775 - ORR1D1 LTR MaLR -244 130 1 5 827 1368 284 111 13 chr6 31766292 31766759 -117750278 - Lx8 LINE L1 -929 6544 6032 5 827 847 209 14 57 chr6 31766768 31767045 -117749992 + Lx8 LINE L1 5702 5996 -1477 5 827 189 175 0 0 chr6 31767923 31767963 -117749074 + (TTAGGG)n Simple_repeat Simple_repeat 4 43 0 5 827 317 314 71 124 chr6 31769305 31769683 -117747354 - ORR1E LTR MaLR 0 359 2 5 827 378 42 0 0 chr6 31770401 31770449 -117746588 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 827 219 36 0 0 chr6 31770760 31770788 -117746249 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 827 859 257 9 61 chr6 31770789 31770922 -117746115 - B4 SINE B4 -76 216 84 5 827 879 103 4 18 chr6 31770922 31771153 -117745884 + (TCTA)n Simple_repeat Simple_repeat 1 227 0 5 827 859 257 9 61 chr6 31771153 31771243 -117745794 - B4 SINE B4 -209 83 1 5 827 570 15 0 0 chr6 31772815 31772882 -117744155 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 827 503 270 47 52 chr6 31774149 31774360 -117742677 + ID_B1 SINE B4 1 210 -14 5 827 941 83 25 6 chr6 31774361 31774519 -117742518 + (CATA)n Simple_repeat Simple_repeat 2 162 0 5 827 256 310 23 0 chr6 31775275 31775362 -117741675 - MIRb SINE MIR -86 182 94 5 827 281 304 133 13 chr6 31776854 31777004 -117740033 - B4 SINE B4 0 292 125 5 827 1626 166 43 128 chr6 31777060 31777475 -117739562 + RMER20A LTR ERVK 11 390 -126 5 827 284 301 48 46 chr6 31777605 31777758 -117739279 - MIRc SINE MIR -50 218 63 5 827 308 319 63 49 chr6 31779163 31779305 -117737732 + MIRb SINE MIR 92 235 -33 5 827 227 216 42 17 chr6 31779726 31779844 -117737193 + GA-rich Low_complexity Low_complexity 2 122 0 5 827 192 40 0 0 chr6 31781072 31781097 -117735940 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 827 197 312 159 8 chr6 31781206 31781332 -117735705 - L2a LINE L2 -2 3424 3280 5 827 27 29 0 0 chr6 31781701 31781735 -117735302 + AT_rich Low_complexity Low_complexity 1 34 0 5 827 566 129 108 0 chr6 31781735 31781828 -117735209 - PB1D9 SINE Alu -5 115 13 5 827 414 263 311 27 chr6 31782461 31782651 -117734386 + B4A SINE B4 8 251 -41 5 827 468 0 0 0 chr6 31782683 31782735 -117734302 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 827 357 225 22 11 chr6 31783119 31783209 -117733828 - MTEa LTR MaLR 0 379 289 5 827 431 192 8 34 chr6 31783344 31783581 -117733456 + (CAGAGA)n Simple_repeat Simple_repeat 1 231 0 5 827 667 295 69 24 chr6 31783697 31783944 -117733093 + B4A SINE B4 2 259 -33 5 827 360 0 0 0 chr6 31783945 31783985 -117733052 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 827 301 296 40 34 chr6 31784013 31784128 -117732909 - B3A SINE B2 -71 124 1 5 827 479 251 230 27 chr6 31784128 31784309 -117732728 - B4A SINE B4 -71 221 2 5 827 690 13 0 0 chr6 31784443 31784522 -117732515 + (TCCC)n Simple_repeat Simple_repeat 3 81 0 5 827 462 294 42 94 chr6 31786730 31787154 -117729883 + RMER10A LTR ERVL 18 419 -23 5 827 789 317 84 48 chr6 31788248 31788665 -117728372 - MLT1C LTR MaLR -2 465 34 5 827 942 219 28 5 chr6 31788700 31788911 -117728126 - B3 SINE B2 0 216 1 5 827 646 109 11 64 chr6 31789331 31789518 -117727519 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 5 827 786 98 34 34 chr6 31789551 31789730 -117727307 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 5 827 348 24 0 0 chr6 31789911 31789952 -117727085 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 827 234 0 0 0 chr6 31789952 31789977 -117727060 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 827 405 0 0 0 chr6 31789977 31790021 -117727016 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 827 313 286 52 26 chr6 31790444 31790559 -117726478 + MER53 DNA hAT 1 118 -75 5 827 183 235 0 0 chr6 31790564 31790615 -117726422 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 827 729 283 33 5 chr6 31791060 31791273 -117725764 + L1ME4a LINE L1 5625 5843 -281 5 827 602 267 144 97 chr6 31791677 31791694 -117725343 - B4 SINE B4 0 292 278 5 827 618 14 0 0 chr6 31791694 31791765 -117725272 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 827 687 267 144 97 chr6 31791765 31792025 -117725012 - B4A SINE B4 -15 277 2 5 827 569 297 72 13 chr6 31792188 31792423 -117724614 - L1MC2 LINE L1 -73 6271 6023 5 827 715 279 0 0 chr6 31792495 31792635 -117724402 - RSINE1 SINE B4 -15 150 11 5 827 580 250 7 28 chr6 31792722 31792866 -117724171 + B1F SINE Alu 3 143 -6 5 827 279 0 0 0 chr6 31792868 31792899 -117724138 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 827 1677 158 92 27 chr6 31793392 31793729 -117723308 + ORR1B2 LTR MaLR 1 359 -8 5 827 701 225 0 21 chr6 31793757 31793898 -117723139 + B1_Mur2 SINE Alu 1 138 -11 5 827 192 77 0 0 chr6 31793910 31793936 -117723101 + (GGGTG)n Simple_repeat Simple_repeat 1 26 0 6 827 526 311 20 13 chr6 31794028 31794181 -117722856 - L2a LINE L2 -9 3417 3264 6 827 312 217 115 135 chr6 31794208 31794304 -117722733 - L2a LINE L2 0 3426 3294 6 827 189 276 103 0 chr6 31795310 31795368 -117721669 - MIRc SINE MIR -58 210 147 6 827 405 0 0 0 chr6 31795995 31796040 -117720997 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 827 519 254 9 0 chr6 31796206 31796316 -117720721 + PB1D7 SINE Alu 5 115 -5 6 827 329 290 69 0 chr6 31797452 31797583 -117719454 + B1F1 SINE Alu 3 142 -7 6 827 414 257 0 0 chr6 31797600 31797893 -117719144 + (CA)n Simple_repeat Simple_repeat 1 293 0 6 827 356 289 0 13 chr6 31798116 31798193 -117718844 - ID4_ SINE ID 0 83 8 6 827 642 113 0 0 chr6 31799018 31799115 -117717922 + (TCCC)n Simple_repeat Simple_repeat 1 97 0 6 827 918 166 14 0 chr6 31799141 31799286 -117717751 - B1_Mur4 SINE Alu -2 148 2 6 827 220 137 0 38 chr6 31799290 31799343 -117717694 + (TTA)n Simple_repeat Simple_repeat 3 53 0 6 827 476 244 8 25 chr6 31799344 31799462 -117717575 - PB1D10 SINE Alu -1 116 1 6 827 3009 27 0 0 chr6 31800048 31800385 -117716652 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 827 9474 30 2 5 chr6 31800385 31801470 -117715567 - IAPEz-int LTR ERVK 0 6481 5400 6 827 19728 33 81 44 chr6 31801445 31801742 -117715295 - IAPEz-int LTR ERVK -3807 2674 2357 6 827 183 265 105 35 chr6 31801742 31801828 -117715209 - L3 LINE CR1 -3669 820 729 6 827 19728 33 81 44 chr6 31801828 31804016 -117713021 - IAPEz-int LTR ERVK -3807 2356 8 6 827 3009 27 0 0 chr6 31804016 31804353 -117712684 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 827 2371 186 19 2 chr6 31804622 31805036 -117712001 - MTC LTR MaLR 0 421 1 6 827 394 333 23 23 chr6 31805102 31805274 -117711763 + MER5A DNA MER1_type 16 187 -2 6 827 582 63 0 0 chr6 31805979 31806058 -117710979 + (TG)n Simple_repeat Simple_repeat 1 79 0 6 827 272 286 33 0 chr6 31806386 31806477 -117710560 + CT-rich Low_complexity Low_complexity 2 95 0 6 827 573 294 8 0 chr6 31806478 31806604 -117710433 - ID_B1 SINE B4 -9 215 89 6 827 1808 159 76 32 chr6 31807702 31808046 -117708991 + RLTR15 LTR ERVK 1 359 0 6 827 756 305 145 42 chr6 31808062 31808448 -117708589 + L2a LINE L2 3001 3426 0 6 827 215 241 0 18 chr6 31808623 31808678 -117708359 + MIR SINE MIR 89 142 -66 6 827 234 257 152 73 chr6 31808777 31808928 -117708109 + L2a LINE L2 3009 3171 -255 6 827 221 283 98 29 chr6 31809044 31809146 -117707891 + MIRm SINE MIR 167 275 -1 6 827 518 0 16 0 chr6 31809346 31809408 -117707629 + (GGGA)n Simple_repeat Simple_repeat 2 64 0 6 827 488 302 169 44 chr6 31810653 31810853 -117706184 - MER44B DNA MER2_type -1 549 318 6 827 4084 107 46 5 chr6 31810853 31811456 -117705581 - RLTR5_Mm LTR ERV1 0 628 1 6 827 488 302 169 44 chr6 31811456 31811574 -117705463 - MER44B DNA MER2_type -233 317 191 6 827 543 227 42 0 chr6 31811583 31811696 -117705341 - MTEa LTR MaLR 0 379 262 6 827 453 284 44 15 chr6 31811696 31811832 -117705205 + ORR1B1 LTR MaLR 3 142 -252 6 827 290 309 9 9 chr6 31811955 31812066 -117704971 + CT-rich Low_complexity Low_complexity 4 114 0 6 827 277 94 18 36 chr6 31812550 31812605 -117704432 + (TTTTC)n Simple_repeat Simple_repeat 3 56 0 6 827 312 252 22 22 chr6 31813513 31813640 -117703397 - Lx9 LINE L1 -7 7637 7511 6 827 387 0 0 0 chr6 31813640 31813683 -117703354 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 827 3555 223 133 35 chr6 31813683 31814615 -117702422 - Lx9 LINE L1 -134 7510 6488 6 827 7713 228 57 71 chr6 31814613 31815775 -117701262 - L1_Rod LINE L1 -1990 3857 2679 6 827 264 59 0 0 chr6 31815775 31815809 -117701228 + (TATG)n Simple_repeat Simple_repeat 2 35 0 6 827 7713 228 57 71 chr6 31815809 31816568 -117700469 - L1_Rod LINE L1 -3169 2678 1939 6 827 1303 27 0 0 chr6 31816568 31816715 -117700322 - B1_Mm SINE Alu 0 147 1 6 827 7713 243 115 50 chr6 31816715 31818061 -117698976 - L1_Rod LINE L1 -3909 1938 529 6 827 377 331 90 0 chr6 31818263 31818396 -117698641 - MIRb SINE MIR -122 146 2 6 827 345 342 53 0 chr6 31818486 31818638 -117698399 + MIR SINE MIR 39 198 -64 6 827 186 43 0 0 chr6 31818886 31818909 -117698128 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 827 478 290 1 1 chr6 31819366 31819482 -117697555 - MTEb LTR MaLR -9 370 255 6 827 840 277 84 32 chr6 31819514 31819844 -117697193 + MTD LTR MaLR 46 379 0 6 827 228 373 71 28 chr6 31820086 31820268 -117696769 + MER20 DNA MER1_type 4 193 -26 6 827 1228 273 47 5 chr6 31820414 31820760 -117696277 + ORR1E LTR MaLR 1 379 0 6 827 212 360 37 49 chr6 31821234 31821413 -117695624 + MIRc SINE MIR 26 204 -64 6 827 247 298 48 0 chr6 31821543 31821627 -117695410 + B1F SINE Alu 42 129 -20 6 827 246 326 44 11 chr6 31821873 31821963 -117695074 + L3b LINE CR1 316 408 -74 6 827 438 69 0 0 chr6 31822229 31822287 -117694750 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 827 1970 134 27 53 chr6 31822330 31822589 -117694448 - ORR1A4 LTR MaLR 0 329 77 6 827 231 36 0 0 chr6 31822589 31822617 -117694420 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 827 1970 134 27 53 chr6 31822617 31822695 -117694342 - ORR1A4 LTR MaLR -253 76 1 6 827 374 308 54 97 chr6 31824381 31824640 -117692397 - L1ME4a LINE L1 -5 6119 5872 6 827 447 252 45 0 chr6 31824762 31824873 -117692164 + MER5A1 DNA MER1_type 8 123 -43 6 827 216 0 0 0 chr6 31825317 31825341 -117691696 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 827 437 321 146 29 chr6 31825652 31825960 -117691077 + MLT1A LTR MaLR 31 374 0 6 827 367 319 67 0 chr6 31826228 31826363 -117690674 - RMER15 LTR ERVL -2 573 430 6 827 231 342 48 48 chr6 31826533 31826763 -117690274 - L1MC4 LINE L1 -92 7950 7721 6 827 591 236 18 58 chr6 31826823 31826994 -117690043 - RSINE1 SINE B4 0 165 2 6 827 523 296 137 70 chr6 31826995 31827087 -117689950 - L1MC4 LINE L1 -312 7730 7627 6 827 828 20 0 0 chr6 31827087 31827185 -117689852 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 6 827 523 296 137 70 chr6 31827185 31827560 -117689477 - L1MC4 LINE L1 -416 7626 7232 6 827 602 276 12 6 chr6 31829693 31829861 -117687176 - MER3 DNA MER1_type -40 169 1 6 827 437 290 25 37 chr6 31829899 31830060 -117686977 - RSINE1 SINE B4 -4 161 3 6 827 589 294 13 19 chr6 31831510 31831666 -117685371 + RSINE1 SINE B4 1 155 -10 6 827 910 139 23 0 chr6 31831668 31831840 -117685197 + GA-rich Low_complexity Low_complexity 3 178 0 6 827 597 159 4 66 chr6 31831866 31832107 -117684930 + GA-rich Low_complexity Low_complexity 1 226 0 6 827 210 37 0 0 chr6 31832538 31832565 -117684472 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 827 1066 122 0 0 chr6 31832808 31832956 -117684081 - B1_Mus1 SINE Alu 0 148 1 6 827 743 215 0 6 chr6 31833008 31833186 -117683851 + (TATG)n Simple_repeat Simple_repeat 2 178 0 6 827 543 31 0 0 chr6 31834046 31834111 -117682926 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 6 827 411 21 0 0 chr6 31834111 31834159 -117682878 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 827 1198 41 7 0 chr6 31834159 31834304 -117682733 - B1_Mm SINE Alu 0 147 2 6 827 243 280 270 0 chr6 31834598 31834698 -117682339 - MER45A DNA Tip100 -49 129 3 6 827 189 94 0 0 chr6 31835455 31835487 -117681550 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 827 855 139 0 0 chr6 31835488 31835668 -117681369 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 827 570 51 0 0 chr6 31835668 31835746 -117681291 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 827 537 253 36 42 chr6 31835755 31835920 -117681117 + RSINE1 SINE B4 2 165 0 6 827 185 309 43 14 chr6 31836035 31836104 -117680933 + MIRc SINE MIR 40 110 -158 6 827 348 103 0 0 chr6 31836381 31836439 -117680598 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 827 204 283 19 0 chr6 31837458 31837511 -117679526 + GA-rich Low_complexity Low_complexity 3 56 0 6 827 519 329 99 28 chr6 31838275 31838488 -117678549 + MLT1F LTR MaLR 7 234 -314 6 827 958 277 65 75 chr6 31838488 31838874 -117678163 + MLT1B LTR MaLR 1 382 -8 6 827 363 298 89 48 chr6 31838904 31839157 -117677880 + MLT1F LTR MaLR 297 595 0 6 827 418 226 3 26 chr6 31839205 31839223 -117677814 - ID4 SINE ID -35 117 8 6 827 366 247 10 41 chr6 31839223 31839320 -117677717 - ID_B1 SINE B4 -123 101 8 6 827 21 36 0 0 chr6 31839757 31839785 -117677252 + AT_rich Low_complexity Low_complexity 1 28 0 6 827 388 293 169 43 chr6 31840028 31840235 -117676802 - ORR1E LTR MaLR -122 237 5 6 827 189 333 99 35 chr6 31840359 31840530 -117676507 + MIR SINE MIR 79 260 -2 6 827 239 122 98 0 chr6 31841572 31841613 -117675424 - RMER30 DNA MER1_type -151 51 7 6 827 872 269 116 0 chr6 31841717 31841985 -117675052 - RMER15 LTR ERVL -1 574 276 6 827 231 257 91 45 chr6 31841998 31842108 -117674929 - RMER15 LTR ERVL -460 115 1 6 827 356 332 154 35 chr6 31842254 31842572 -117674465 + L1ME3B LINE L1 5713 6068 -172 6 827 804 312 114 25 chr6 31842858 31843174 -117673863 + MER2 DNA MER2_type 1 344 -1 6 827 285 300 12 0 chr6 31843395 31843475 -117673562 - ID4 SINE ID -1 82 2 6 827 377 319 123 36 chr6 31843475 31843670 -117673367 - L1M5 LINE L1 -756 5484 5273 6 827 264 59 0 0 chr6 31843670 31843704 -117673333 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 827 408 272 96 75 chr6 31843778 31843965 -117673072 + L1ME2 LINE L1 5707 5897 -267 6 827 280 219 91 10 chr6 31844059 31844143 -117672894 + ID4 SINE ID 2 89 -63 6 827 180 0 0 0 chr6 31844477 31844497 -117672540 + (A)n Simple_repeat Simple_repeat 1 20 0 6 827 617 297 0 0 chr6 31847955 31848093 -117668944 + B4 SINE B4 146 283 -9 6 827 393 75 0 0 chr6 31848238 31848291 -117668746 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 827 1026 90 11 22 chr6 31849468 31849650 -117667387 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 827 452 86 0 14 chr6 31849665 31849736 -117667301 + (TCC)n Simple_repeat Simple_repeat 1 70 0 6 827 249 287 92 0 chr6 31849965 31850052 -117666985 - MIR3 SINE MIR -7 201 107 6 103 883 340 80 14 chr6 31850141 31850929 -117666108 + L1ME1 LINE L1 2257 3096 -3050 6 828 672 229 141 25 chr6 31850987 31851229 -117665808 + Lx8 LINE L1 6814 7083 -390 7 828 340 340 141 41 chr6 31851380 31851791 -117665246 + L1ME1 LINE L1 3071 3522 -2624 6 828 459 160 0 0 chr6 31851880 31851955 -117665082 + RMER17B LTR ERVK 183 257 -701 7 828 227 175 0 0 chr6 31851953 31851993 -117665044 - RMER17B LTR ERVK -737 221 182 7 828 473 303 52 5 chr6 31852715 31852886 -117664151 + B3 SINE B2 2 186 -9 7 828 263 282 0 0 chr6 31852913 31852991 -117664046 + L1ME1 LINE L1 4457 4534 -1612 6 828 275 260 70 39 chr6 31852996 31853124 -117663913 + L1ME1 LINE L1 5297 5428 -755 6 828 709 156 43 22 chr6 31853125 31853263 -117663774 + Lx7 LINE L1 7552 7692 -4 7 828 656 327 111 18 chr6 31853612 31854107 -117662930 + L1ME1 LINE L1 5494 6034 -145 6 828 262 330 60 0 chr6 31854792 31854892 -117662145 + MLT1C LTR MaLR 35 140 -327 7 828 845 284 59 22 chr6 31854917 31855187 -117661850 + B4 SINE B4 1 280 -12 7 828 378 0 0 0 chr6 31855215 31855257 -117661780 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 828 495 0 0 0 chr6 31855257 31855311 -117661726 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 828 183 269 51 77 chr6 31855378 31855495 -117661542 + L3 LINE CR1 730 843 -3646 7 828 180 0 0 0 chr6 31856077 31856097 -117660940 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 7 828 8237 42 5 9 chr6 31856103 31857398 -117659639 - L1Md_F2 LINE L1 -15 6567 5275 7 828 2238 125 39 8 chr6 31857398 31857754 -117659283 + IAPLTR1_Mm LTR ERVK 1 367 0 7 828 365 89 56 69 chr6 31857756 31857828 -117659209 + IAPEz-int LTR ERVK 3 73 -1914 7 828 260 139 0 0 chr6 31857833 31857876 -117659161 + IAPEz-int LTR ERVK 15 57 -1930 7 828 24567 48 23 22 chr6 31857857 31860913 -117656124 + IAPEz-int LTR ERVK 17 3076 -3405 7 828 6916 52 12 6 chr6 31860899 31861744 -117655293 + IAPEz-int LTR ERVK 5630 6479 -2 7 828 2238 125 39 8 chr6 31861746 31862102 -117654935 + IAPLTR1_Mm LTR ERVK 1 367 0 7 828 30869 68 4 1 chr6 31862102 31866402 -117650635 - L1Md_F2 LINE L1 -603 5280 969 7 828 343 294 133 0 chr6 31866434 31866614 -117650423 - Lx8 LINE L1 -5 7468 7265 7 828 22 0 0 0 chr6 31866680 31866702 -117650335 + AT_rich Low_complexity Low_complexity 1 22 0 7 828 720 242 4 0 chr6 31866722 31866953 -117650084 + (TGGA)n Simple_repeat Simple_repeat 1 232 0 7 828 405 0 0 0 chr6 31866953 31866998 -117650039 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 828 310 271 16 0 chr6 31867026 31867155 -117649882 + (TGGA)n Simple_repeat Simple_repeat 1 131 0 7 828 516 32 0 0 chr6 31868580 31868642 -117648395 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 7 828 1062 251 54 22 chr6 31868779 31869056 -117647981 + B4A SINE B4 3 288 -4 7 828 580 309 26 0 chr6 31869185 31869379 -117647658 - L1MB1 LINE L1 -2 6166 5968 7 828 879 319 96 0 chr6 31869468 31869866 -117647171 - L1MB1 LINE L1 -327 5841 5406 7 828 234 277 0 24 chr6 31870400 31870485 -117646552 + L1M3 LINE L1 4569 4651 -1489 7 828 325 262 65 176 chr6 31870486 31870619 -117646418 + PB1D10 SINE Alu 3 118 -31 7 828 321 336 28 18 chr6 31870619 31870728 -117646309 + RSINE1 SINE B4 1 110 -55 7 828 294 29 0 0 chr6 31870802 31870837 -117646200 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 828 1069 298 43 22 chr6 31870894 31871357 -117645680 + L1M3 LINE L1 4677 5149 -991 7 828 1185 245 104 0 chr6 31871689 31871987 -117645050 - Lx8 LINE L1 -278 7195 6867 7 828 309 342 56 37 chr6 31871997 31872158 -117644879 - MamRep434 DNA TcMar -251 175 12 7 828 232 331 88 38 chr6 31872205 31872466 -117644571 - MARNA DNA Mariner -269 317 44 7 828 940 266 32 16 chr6 31872487 31872735 -117644302 + MER47B DNA MER2_type 1 252 -166 7 828 775 280 159 7 chr6 31873018 31873288 -117643749 - ORR1E LTR MaLR 0 359 49 7 828 354 330 64 9 chr6 31873764 31873874 -117643163 + Tigger5 DNA MER2_type 6 121 -2285 7 828 547 283 68 43 chr6 31873995 31874202 -117642835 - L2c LINE L2 0 3387 3176 7 828 488 303 142 35 chr6 31877650 31877944 -117639093 - L1MC4a LINE L1 -1117 6925 6609 7 828 483 18 0 0 chr6 31877944 31878000 -117639037 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 7 828 482 312 121 47 chr6 31878000 31878092 -117638945 - L1MC4a LINE L1 -1433 6609 6511 7 828 279 79 0 0 chr6 31878131 31878169 -117638868 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 828 240 246 22 156 chr6 31878851 31879082 -117637955 - RLTR28 LTR ERVL -69 455 256 7 828 330 335 83 56 chr6 31879616 31879796 -117637241 + MER5A DNA MER1_type 3 187 -2 7 828 439 123 0 24 chr6 31879989 31880072 -117636965 + (AGGGGG)n Simple_repeat Simple_repeat 6 86 0 7 828 465 19 0 0 chr6 31880774 31880828 -117636209 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 828 211 311 11 53 chr6 31881095 31881190 -117635847 - L2c LINE L2 -8 3379 3289 7 828 4934 47 2 22 chr6 31881431 31882061 -117634976 - L1Md_F3 LINE L1 -14 6570 5954 7 828 465 323 159 0 chr6 31882180 31882369 -117634668 - ID_B1 SINE B4 -2 222 4 7 828 575 286 153 52 chr6 31882372 31882796 -117634241 - MLT1C LTR MaLR 0 467 1 7 828 300 27 0 0 chr6 31883182 31883219 -117633818 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 828 1167 299 52 51 chr6 31884914 31885566 -117631471 + L1MB4 LINE L1 5470 6122 -58 7 828 586 267 59 7 chr6 31885632 31885768 -117631269 + RSINE1 SINE B4 2 144 -21 7 828 221 288 175 36 chr6 31885768 31885798 -117631239 + B3 SINE B2 1 189 -27 7 828 768 222 88 0 chr6 31886008 31886202 -117630835 + Lx6 LINE L1 6877 7087 -609 7 828 203 0 37 0 chr6 31886250 31886277 -117630760 + (TGG)n Simple_repeat Simple_repeat 2 29 0 7 828 237 239 200 32 chr6 31887771 31887866 -117629171 - MIR SINE MIR -118 144 34 7 828 585 0 0 0 chr6 31888155 31888220 -117628817 + (TTG)n Simple_repeat Simple_repeat 1 65 0 7 828 387 0 0 0 chr6 31888220 31888263 -117628774 + (TGG)n Simple_repeat Simple_repeat 3 45 0 7 828 216 323 48 48 chr6 31888735 31888839 -117628198 + MIR3 SINE MIR 78 181 -27 7 828 234 341 72 22 chr6 31889179 31889317 -117627720 + MIR3 SINE MIR 43 187 -21 7 828 3267 45 10 0 chr6 31889462 31889858 -117627179 - MTB LTR MaLR 0 400 1 7 828 315 0 0 0 chr6 31890243 31890278 -117626759 + (A)n Simple_repeat Simple_repeat 1 35 0 7 828 981 206 7 128 chr6 31891854 31892127 -117624910 + B4A SINE B4 1 240 -52 7 828 239 240 26 39 chr6 31893412 31893490 -117623547 - MIRc SINE MIR -132 136 60 7 828 637 271 31 18 chr6 31893559 31893884 -117623153 - L1MA4 LINE L1 -909 6067 5715 7 828 437 307 172 57 chr6 31894418 31894732 -117622305 + MLT1G3 LTR MaLR 181 530 -65 7 828 898 270 87 39 chr6 31894862 31895174 -117621863 - ORR1E LTR MaLR -26 333 7 7 828 837 56 0 0 chr6 31895176 31895283 -117621754 + (CA)n Simple_repeat Simple_repeat 1 107 0 7 828 663 273 153 62 chr6 31896351 31896703 -117620334 + MLT2C1 LTR ERVL 2 385 -12 7 828 229 246 58 0 chr6 31898546 31898615 -117618422 + MER5A DNA MER1_type 95 167 -22 7 828 1137 246 88 18 chr6 31898642 31898985 -117618052 + ORR1D2 LTR MaLR 1 367 -3 7 828 323 230 0 63 chr6 31899350 31899429 -117617608 + MTE2a LTR MaLR 64 137 -242 7 828 694 305 108 77 chr6 31899374 31899697 -117617340 + MT2A LTR ERVL 85 417 -116 7 828 21 0 0 0 chr6 31899699 31899720 -117617317 + AT_rich Low_complexity Low_complexity 1 21 0 7 828 441 0 0 0 chr6 31899828 31899877 -117617160 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 828 567 0 0 0 chr6 31899877 31899939 -117617098 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 828 540 56 0 0 chr6 31900278 31900350 -117616687 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 828 899 204 171 79 chr6 31902823 31903148 -117613889 + MT2A LTR ERVL 16 483 -118 7 828 719 83 16 16 chr6 31903173 31903296 -117613741 + (TA)n Simple_repeat Simple_repeat 2 124 0 7 828 207 0 0 0 chr6 31903298 31903321 -117613716 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 828 337 299 90 7 chr6 31903751 31903896 -117613141 + MIR SINE MIR 33 189 -73 7 828 562 287 92 78 chr6 31904008 31904451 -117612586 + MLT2B4 LTR ERVL 2 493 -63 7 828 1117 43 13 26 chr6 31904937 31905245 -117611792 + (CA)n Simple_repeat Simple_repeat 1 303 0 7 828 1199 241 51 72 chr6 31905508 31905839 -117611198 + MTEa LTR MaLR 1 324 -55 7 828 209 180 0 20 chr6 31905840 31905891 -117611146 + CT-rich Low_complexity Low_complexity 1 50 0 7 828 351 296 60 27 chr6 31905891 31906040 -117610997 - HAL1-3A_ME LINE L1 -421 2437 2284 7 828 353 169 28 10 chr6 31906048 31906119 -117610918 + MTEa LTR MaLR 314 379 0 7 828 336 393 88 76 chr6 31906992 31907388 -117609649 + L1MEg LINE L1 153 553 -5531 7 828 3026 32 0 6 chr6 31907653 31908001 -117609036 - ORR1A0 LTR MaLR 0 346 1 7 828 8067 42 3 1 chr6 31908001 31908988 -117608049 - ORR1A0-int LTR MaLR 0 1792 804 7 828 354 45 0 0 chr6 31909151 31909195 -117607842 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 828 200 31 62 0 chr6 31909198 31909230 -117607807 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 7 828 1213 61 0 13 chr6 31909235 31909385 -117607652 - B1_Mus1 SINE Alu 0 148 1 7 828 291 54 0 0 chr6 31909622 31909659 -117607378 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 828 225 333 44 0 chr6 31910323 31910413 -117606624 + LTR79 LTR ERVL 382 475 -52 7 828 920 165 11 0 chr6 31910887 31911063 -117605974 + CT-rich Low_complexity Low_complexity 3 180 0 7 828 320 176 15 0 chr6 31911080 31911148 -117605889 + CT-rich Low_complexity Low_complexity 1 69 0 7 828 854 88 8 0 chr6 31911150 31911275 -117605762 + (TTTC)n Simple_repeat Simple_repeat 4 129 0 7 828 236 263 131 44 chr6 31911410 31911593 -117605444 - LTR33A LTR ERVL -2 518 320 7 828 225 352 14 0 chr6 31911687 31911758 -117605279 - ID4_ SINE ID -7 76 5 7 828 366 317 140 28 chr6 31911786 31912072 -117604965 - L1MD2 LINE L1 -31 6328 6011 7 828 494 326 61 0 chr6 31912151 31912332 -117604705 + MLT1B LTR MaLR 3 194 -196 7 828 630 198 0 0 chr6 31912334 31912506 -117604531 + (CA)n Simple_repeat Simple_repeat 2 173 0 7 828 409 218 54 39 chr6 31912506 31912635 -117604402 + MLT1B LTR MaLR 188 318 -149 7 828 283 313 25 57 chr6 31912627 31912749 -117604288 + MLT1A LTR MaLR 248 365 -9 7 828 253 253 20 99 chr6 31912858 31912959 -117604078 - LTR50 LTR ERVL -477 318 226 7 828 743 284 57 44 chr6 31914006 31914304 -117602733 + ORR1E LTR MaLR 56 357 -2 7 828 31 0 0 0 chr6 31914996 31915027 -117602010 + AT_rich Low_complexity Low_complexity 1 31 0 7 828 264 360 23 31 chr6 31915103 31915232 -117601805 + MIR SINE MIR 47 174 -88 7 828 420 297 126 73 chr6 31915436 31915734 -117601303 + MTEa LTR MaLR 1 372 -7 7 828 469 177 9 9 chr6 31916590 31916704 -117600333 + CT-rich Low_complexity Low_complexity 4 117 0 8 828 816 11 0 0 chr6 31916707 31916800 -117600237 + (TTTC)n Simple_repeat Simple_repeat 3 95 0 8 828 417 95 0 0 chr6 31916819 31916882 -117600155 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 828 639 248 145 46 chr6 31916882 31917144 -117599893 - B4A SINE B4 0 292 5 8 828 1890 227 16 11 chr6 31917264 31917633 -117599404 - MTEa LTR MaLR -7 372 2 8 828 323 310 0 74 chr6 31917964 31918086 -117598951 - LTR41B LTR ERVL -644 114 2 8 828 523 283 98 35 chr6 31918361 31918647 -117598390 + Ricksha_c DNA MuDR 590 893 -1155 8 828 209 300 40 139 chr6 31918712 31918863 -117598174 + L2a LINE L2 3286 3421 -5 8 828 239 175 18 0 chr6 31919047 31919104 -117597933 + (CACCAT)n Simple_repeat Simple_repeat 4 61 0 8 828 272 286 0 31 chr6 31919128 31919193 -117597844 - B4 SINE B4 -105 187 125 8 828 1391 227 88 9 chr6 31919193 31919522 -117597515 - ORR1D2 LTR MaLR -15 355 1 8 828 479 303 38 8 chr6 31919522 31919655 -117597382 - B4 SINE B4 -151 141 5 8 828 453 244 58 13 chr6 31919939 31920093 -117596944 - Lx8 LINE L1 -1553 5920 5760 8 828 314 236 213 11 chr6 31920095 31920189 -117596848 - PB1D10 SINE Alu -4 113 1 8 828 544 345 29 10 chr6 31920569 31920774 -117596263 - MER3 DNA MER1_type 0 209 1 8 828 368 253 0 82 chr6 31921091 31921208 -117595829 + C-rich Low_complexity Low_complexity 71 180 0 8 828 180 0 0 0 chr6 31921208 31921228 -117595809 + (CACCC)n Simple_repeat Simple_repeat 4 23 0 8 828 277 189 88 70 chr6 31921228 31921347 -117595690 + (CATCC)n Simple_repeat Simple_repeat 1 120 0 8 828 935 243 0 0 chr6 31921421 31921594 -117595443 - B3 SINE B2 -43 173 1 8 828 932 219 77 19 chr6 31921984 31922245 -117594792 + B4A SINE B4 1 276 -16 8 828 276 30 0 0 chr6 31922248 31922281 -117594756 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 828 632 243 16 42 chr6 31922625 31922818 -117594219 + B3A SINE B2 4 191 -7 8 828 2948 153 29 17 chr6 31923845 31924365 -117592672 - RMER6D LTR ERVK -5 715 190 8 828 933 186 107 0 chr6 31924355 31924532 -117592505 + ORR1B2 LTR MaLR 170 365 -2 8 828 23 54 0 0 chr6 31924605 31924642 -117592395 + AT_rich Low_complexity Low_complexity 1 37 0 8 828 239 135 0 0 chr6 31924652 31924689 -117592348 + L1_Mur3 LINE L1 5358 5394 -486 8 828 219 279 16 0 chr6 31924694 31924755 -117592282 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 8 828 763 316 48 9 chr6 31924757 31925073 -117591964 - L1M3 LINE L1 -404 5779 5452 8 828 508 165 11 11 chr6 31926043 31926135 -117590902 + B1_Mur3 SINE Alu 38 129 -20 8 828 576 0 0 0 chr6 31926141 31926205 -117590832 + (CAAAA)n Simple_repeat Simple_repeat 1 64 0 8 828 683 298 235 35 chr6 31926249 31926850 -117590187 + L1MB3 LINE L1 5422 6142 -41 8 828 591 301 39 0 chr6 31926887 31927040 -117589997 + RSINE1 SINE B4 1 159 -6 8 828 24 32 0 0 chr6 31927040 31927071 -117589966 + AT_rich Low_complexity Low_complexity 1 31 0 8 828 2247 98 65 7 chr6 31927155 31927464 -117589573 - ORR1A2 LTR MaLR 0 327 1 8 828 601 264 22 70 chr6 31928234 31928390 -117588647 - RMER13A LTR ERVK 0 860 707 8 828 429 129 0 0 chr6 31928390 31928460 -117588577 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 828 2316 199 109 17 chr6 31928460 31929018 -117588019 - RMER13A LTR ERVK -154 706 1 8 828 304 276 26 130 chr6 31929018 31929128 -117587909 + RMER15 LTR ERVL 367 460 -115 8 828 1209 215 168 16 chr6 31929528 31929883 -117587154 + MTD LTR MaLR 2 419 0 8 828 369 0 0 0 chr6 31930040 31930081 -117586956 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 828 613 237 85 57 chr6 31930982 31931181 -117585856 - B3A SINE B2 -1 197 16 8 828 211 313 212 40 chr6 31931190 31931643 -117585394 + L2 LINE L2 2206 2736 -683 8 828 301 250 88 59 chr6 31931913 31932049 -117584988 - Cheshire DNA MER1_type -2142 278 139 8 828 284 275 12 12 chr6 31932102 31932183 -117584854 - MTEb LTR MaLR 0 379 299 8 828 856 246 35 20 chr6 31934918 31935117 -117581920 - B3 SINE B2 -5 211 10 8 828 411 56 0 0 chr6 31935446 31935500 -117581537 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 828 187 340 101 50 chr6 31935555 31936050 -117580987 - L2 LINE L2 -444 2975 2456 8 828 296 304 45 34 chr6 31936251 31936400 -117580637 - L2a LINE L2 -253 3173 3026 8 828 198 191 0 0 chr6 31936813 31936855 -117580182 + T-rich Low_complexity Low_complexity 1 42 0 8 828 318 241 139 0 chr6 31937304 31937383 -117579654 + PB1D10 SINE Alu 1 90 -27 8 828 340 212 15 0 chr6 31938005 31938071 -117578966 - ID4 SINE ID -2 81 15 8 828 420 20 0 0 chr6 31938735 31938784 -117578253 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 828 638 281 0 8 chr6 31939972 31940101 -117576936 + B1_Mur1 SINE Alu 1 128 -21 8 828 321 145 0 0 chr6 31940103 31940165 -117576872 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 8 828 658 304 89 69 chr6 31940670 31941348 -117575689 - L1ME2 LINE L1 -13 6151 5455 8 828 804 317 76 57 chr6 31941530 31942480 -117574557 - L1ME2 LINE L1 -921 5225 4258 8 828 248 279 116 37 chr6 31942561 31942725 -117574312 - L1MEc LINE L1 -1992 4327 4151 8 828 5960 122 132 7 chr6 31942719 31944931 -117572106 + L1VL2 LINE L1 582 3288 -626 8 828 1268 90 17 6 chr6 31945007 31945185 -117571852 - B2_Mm2 SINE B2 -14 181 2 8 828 234 209 75 0 chr6 31945195 31945262 -117571775 - RMER1C Other Other -3 1339 1268 8 828 4102 183 97 8 chr6 31945774 31946566 -117570471 - RMER1B Other Other -161 905 43 8 828 21 0 0 0 chr6 31946803 31946824 -117570213 + AT_rich Low_complexity Low_complexity 1 21 0 8 828 560 251 107 27 chr6 31946882 31947193 -117569844 - L1MEc LINE L1 -2205 4114 3774 8 828 2687 252 70 7 chr6 31947392 31948088 -117568949 - Lx8 LINE L1 -132 7341 6602 8 828 470 200 27 54 chr6 31948085 31948196 -117568841 - Lx8 LINE L1 -1151 6322 6215 8 828 619 266 118 68 chr6 31948368 31948926 -117568111 - L1MEc LINE L1 -2532 3787 3201 8 828 871 200 10 10 chr6 31948934 31949126 -117567911 - B3 SINE B2 0 216 25 8 828 448 291 47 42 chr6 31949135 31949350 -117567687 - L1MEc LINE L1 -3103 3216 3001 8 828 301 364 15 15 chr6 31949496 31949630 -117567407 - MLT1A1 LTR MaLR -269 139 6 8 828 371 316 155 28 chr6 31949644 31950116 -117566921 - L1MEc LINE L1 -3324 2995 2464 8 828 538 283 53 21 chr6 31950146 31950483 -117566554 - Lx9 LINE L1 -149 7495 7094 8 828 317 317 35 40 chr6 31950511 31950756 -117566281 - L1MEc LINE L1 -3940 2460 2216 8 828 529 205 12 56 chr6 31951162 31951322 -117565715 - L1MA8 LINE L1 -23 6268 6116 8 828 505 230 0 9 chr6 31951337 31951451 -117565586 + MTD LTR MaLR 299 411 -8 8 828 333 0 0 0 chr6 31951537 31951574 -117565463 + (TATG)n Simple_repeat Simple_repeat 2 38 0 8 828 1129 272 132 57 chr6 31952257 31952818 -117564219 + Lx8 LINE L1 6871 7473 0 8 828 944 264 4 44 chr6 31953297 31953547 -117563490 - Lx6 LINE L1 -27 7433 7194 8 828 1122 220 28 16 chr6 31953543 31953792 -117563245 + Lx5 LINE L1 6509 6760 -290 8 828 381 211 9 46 chr6 31955195 31955304 -117561733 + MLT1A1 LTR MaLR 302 406 -2 8 828 203 234 15 15 chr6 31955447 31955512 -117561525 + A-rich Low_complexity Low_complexity 1 65 0 8 828 621 281 11 26 chr6 31956505 31956695 -117560342 + B3A SINE B2 2 188 -10 8 828 252 177 95 16 chr6 31957364 31957427 -117559610 + L5 LINE RTE 2081 2148 -117 8 828 261 0 0 0 chr6 31957986 31958015 -117559022 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 828 701 284 58 93 chr6 31958116 31958426 -117558611 - ORR1E LTR MaLR 0 370 64 8 828 3077 26 46 26 chr6 31958426 31958814 -117558223 + MTA_Mm LTR MaLR 1 396 0 8 828 701 276 58 94 chr6 31958814 31958881 -117558156 - ORR1E LTR MaLR -292 67 1 8 828 563 311 6 42 chr6 31959320 31959488 -117557549 + RSINE1 SINE B4 2 163 -2 8 828 252 290 14 0 chr6 31959504 31959573 -117557464 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 828 233 268 87 66 chr6 31959719 31959915 -117557122 + L1M5 LINE L1 5265 5464 -660 8 828 299 157 45 0 chr6 31960423 31960512 -117556525 + (TCCA)n Simple_repeat Simple_repeat 1 93 0 8 828 504 271 14 14 chr6 31960747 31960889 -117556148 - RSINE1 SINE B4 -22 143 2 8 828 207 0 0 0 chr6 31960903 31960926 -117556111 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 828 726 304 5 0 chr6 31960973 31961009 -117556028 - B3A SINE B2 -6 192 157 8 828 195 69 0 0 chr6 31961009 31961038 -117555999 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 828 726 304 5 0 chr6 31961038 31961192 -117555845 - B3A SINE B2 -42 156 2 8 828 633 253 19 25 chr6 31961791 31961953 -117555084 + RSINE1 SINE B4 3 163 -2 8 828 26 0 0 0 chr6 31961955 31961981 -117555056 + AT_rich Low_complexity Low_complexity 1 26 0 8 828 227 244 66 55 chr6 31962177 31962268 -117554769 + PB1 SINE Alu 26 117 -10 8 828 1329 224 103 18 chr6 31963493 31963647 -117553390 + ORR1D2 LTR MaLR 1 173 -197 8 828 2082 148 5 62 chr6 31963647 31964036 -117553001 - ORR1B2 LTR MaLR 0 367 1 8 828 1329 224 103 18 chr6 31964036 31964222 -117552815 + ORR1D2 LTR MaLR 174 370 0 8 828 475 312 22 39 chr6 31965254 31965515 -117551522 + ORR1E LTR MaLR 1 250 -120 8 828 414 57 0 0 chr6 31966364 31966417 -117550620 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 828 198 0 0 0 chr6 31968559 31968581 -117548456 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 8 828 245 196 0 0 chr6 31969281 31969337 -117547700 - L1MA5 LINE L1 0 6300 6245 8 828 724 295 75 12 chr6 31969373 31969613 -117547424 - B4A SINE B4 -6 286 32 8 828 528 342 30 8 chr6 31969619 31969887 -117547150 - L1MA5 LINE L1 -61 6239 5966 8 828 32 26 0 0 chr6 31969887 31969926 -117547111 + AT_rich Low_complexity Low_complexity 1 39 0 8 828 1057 208 19 9 chr6 31969926 31970140 -117546897 - B3 SINE B2 0 216 1 8 828 1432 286 28 12 chr6 31970142 31970573 -117546464 - L1MA5 LINE L1 -322 5978 5541 8 828 2019 187 98 159 chr6 31970683 31971394 -117545643 - RMER1B Other Other -14 1052 385 8 828 228 67 0 0 chr6 31971402 31971432 -117545605 + (T)n Simple_repeat Simple_repeat 1 30 0 8 828 880 62 3 18 chr6 31971433 31971585 -117545452 - B1_Mm SINE Alu 0 150 9 8 828 318 196 40 183 chr6 31971439 31971614 -117545423 - B4A SINE B4 -71 221 72 8 828 1099 207 27 14 chr6 31973874 31974094 -117542943 - URR1B DNA MER1_type -1 224 2 9 828 21 36 0 0 chr6 31974473 31974501 -117542536 + AT_rich Low_complexity Low_complexity 1 28 0 9 828 758 237 40 0 chr6 31974961 31975134 -117541903 - B3A SINE B2 -18 180 1 9 828 22 0 0 0 chr6 31975190 31975212 -117541825 + AT_rich Low_complexity Low_complexity 1 22 0 9 828 494 66 145 0 chr6 31975283 31975359 -117541678 + BC1_Mm scRNA scRNA 1 87 -65 9 828 256 331 45 44 chr6 31975711 31976089 -117540948 + L1ME3B LINE L1 5640 6024 -100 9 828 627 71 0 0 chr6 31976233 31976318 -117540719 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 9 828 25 0 0 0 chr6 31976425 31976450 -117540587 + AT_rich Low_complexity Low_complexity 1 25 0 9 828 246 62 0 0 chr6 31976681 31976713 -117540324 + (GA)n Simple_repeat Simple_repeat 1 32 0 9 828 375 228 95 5 chr6 31977057 31977166 -117539871 - MLT1A1 LTR MaLR -38 370 268 9 828 484 344 20 25 chr6 31977513 31977713 -117539324 + B4A SINE B4 85 283 -9 9 828 228 306 0 75 chr6 31977930 31978036 -117539001 - RMER1C Other Other -3 1339 1242 9 828 2823 296 77 18 chr6 31977958 31978986 -117538051 - Lx8 LINE L1 -9 7464 6376 9 828 1981 179 25 17 chr6 31979339 31979743 -117537294 + MTC LTR MaLR 8 414 -7 9 828 678 113 0 0 chr6 31980087 31980202 -117536835 + (TC)n Simple_repeat Simple_repeat 2 116 0 9 828 666 288 66 28 chr6 31980213 31980424 -117536613 - MTEb LTR MaLR -13 366 148 9 828 835 216 383 13 chr6 31980442 31980729 -117536308 - MTD LTR MaLR -14 405 13 9 829 934 131 95 0 chr6 31982092 31982260 -117534777 - URR1B DNA MER1_type 0 225 42 9 829 237 310 104 75 chr6 31982572 31982851 -117534186 - L1ME3A LINE L1 -30 6143 5857 9 829 228 280 40 0 chr6 31983124 31983199 -117533838 + MLT1A1 LTR MaLR 53 130 -278 9 829 450 243 0 10 chr6 31983388 31983492 -117533545 + MLT1A1 LTR MaLR 306 408 0 9 829 1013 271 90 18 chr6 31984194 31984528 -117532509 + ORR1E LTR MaLR 1 358 -1 9 829 3555 13 5 0 chr6 31985054 31985448 -117531589 + MTA_Mm LTR MaLR 1 396 0 9 829 9347 34 2 1 chr6 31985448 31986545 -117530492 + MTA_Mm-int LTR MaLR 1 1098 0 9 829 3584 13 2 0 chr6 31986545 31986940 -117530097 + MTA_Mm LTR MaLR 1 396 0 9 829 243 291 68 68 chr6 31987141 31987565 -117529472 + L1M5 LINE L1 5256 5677 -491 9 829 402 21 0 0 chr6 31987578 31987625 -117529412 + (TA)n Simple_repeat Simple_repeat 2 48 0 9 829 519 330 43 33 chr6 31988099 31988375 -117528662 + LTR40b LTR ERVL 166 444 -18 9 829 319 315 60 20 chr6 31988548 31988697 -117528340 + MLT1A1 LTR MaLR 1 155 -253 9 829 442 274 0 13 chr6 31988741 31988872 -117528165 + MLT1A1 LTR MaLR 246 404 -4 9 829 1023 227 58 18 chr6 31989269 31989597 -117527440 - RLTR15 LTR ERVK -18 341 1 9 829 952 246 46 62 chr6 31990614 31990918 -117526119 + ORR1E LTR MaLR 4 302 -57 9 829 302 0 0 26 chr6 31991171 31991210 -117525827 + (TTA)n Simple_repeat Simple_repeat 2 39 0 9 829 321 118 0 0 chr6 31991320 31991371 -117525666 + (TCC)n Simple_repeat Simple_repeat 3 53 0 9 829 438 315 122 78 chr6 31991373 31991777 -117525260 - Lx7 LINE L1 -51 7422 7014 9 829 718 241 107 0 chr6 31991777 31991964 -117525073 - B3 SINE B2 -5 211 5 9 829 438 335 88 72 chr6 31991964 31992140 -117524897 - Lx7 LINE L1 -683 7013 6807 9 829 184 296 0 53 chr6 31992229 31992286 -117524751 + L2b LINE L2 3313 3366 -9 9 829 198 0 0 0 chr6 31993211 31993233 -117523804 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 829 288 333 79 8 chr6 31993599 31993726 -117523311 - ORR1E LTR MaLR -221 138 3 9 829 717 282 49 111 chr6 31994255 31994562 -117522475 - B4A SINE B4 -4 288 1 9 829 288 0 0 0 chr6 31994991 31995023 -117522014 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 829 378 0 0 0 chr6 31996765 31996807 -117520230 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 829 856 314 65 57 chr6 31997593 31998052 -117518985 - LTR40c LTR ERVL 0 465 3 9 829 597 28 0 0 chr6 31998246 31998317 -117518720 + (TG)n Simple_repeat Simple_repeat 2 72 0 9 829 225 65 0 0 chr6 31999252 31999283 -117517754 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 829 250 311 47 39 chr6 32001941 32002068 -117514969 + MIRb SINE MIR 117 244 -24 1 829 818 282 63 54 chr6 32003128 32003477 -117513560 + ORR1E LTR MaLR 3 354 -5 2 829 223 178 0 0 chr6 32004277 32004322 -117512715 + T-rich Low_complexity Low_complexity 1 45 0 3 829 7457 54 1 3 chr6 32004332 32005237 -117511800 - L1_Mus1 LINE L1 -2 6565 5663 4 829 614 62 0 0 chr6 32005237 32005318 -117511719 + B2_Mm2 SINE B2 9 89 -106 5 829 1149 200 163 31 chr6 32005687 32005981 -117511056 - ORR1D1 LTR MaLR 0 374 42 6 829 244 307 26 13 chr6 32009108 32009184 -117507853 + ID4_ SINE ID 7 83 0 7 829 252 270 127 0 chr6 32010623 32010749 -117506288 - MIR SINE MIR -36 226 85 8 829 367 246 14 47 chr6 32010980 32011147 -117505890 + GA-rich Low_complexity Low_complexity 1 161 0 9 829 486 0 0 0 chr6 32013277 32013331 -117503706 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 829 180 0 0 0 chr6 32013331 32013350 -117503687 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 829 221 312 31 31 chr6 32014623 32014719 -117502318 + L3 LINE CR1 4148 4243 -246 1 829 338 311 72 7 chr6 32014868 32015020 -117502017 - B3A SINE B2 -30 168 7 1 829 243 0 0 0 chr6 32015738 32015765 -117501272 + (TGG)n Simple_repeat Simple_repeat 1 27 0 1 829 324 0 0 0 chr6 32015843 32015879 -117501158 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 829 21 57 0 0 chr6 32016490 32016525 -117500512 + AT_rich Low_complexity Low_complexity 1 35 0 1 829 280 296 41 87 chr6 32016765 32017019 -117500018 - MTEb LTR MaLR -18 361 97 1 829 319 330 0 0 chr6 32017355 32017449 -117499588 + MER58B DNA MER1_type 172 265 -76 1 829 292 343 10 0 chr6 32017454 32017553 -117499484 + MLT2B3 LTR ERVL 1 100 -454 1 829 1109 308 156 11 chr6 32017876 32018404 -117498633 + MTEa-int LTR MaLR 40 632 -948 2 829 818 262 72 23 chr6 32018447 32018478 -117498559 + MTEa-int LTR MaLR 1250 1280 -300 2 829 1231 246 17 102 chr6 32018478 32018890 -117498147 - MTE2a LTR MaLR -2 377 1 2 829 818 262 72 23 chr6 32018890 32019163 -117497874 + MTEa-int LTR MaLR 1281 1569 -11 2 829 523 180 229 0 chr6 32019252 32019374 -117497663 + MTEa LTR MaLR 3 152 -227 2 829 614 214 95 14 chr6 32019398 32019545 -117497492 + MTEa LTR MaLR 209 367 -12 2 829 413 301 120 54 chr6 32019658 32019900 -117497137 + ORR1B1 LTR MaLR 97 354 -5 2 829 2258 237 88 43 chr6 32020465 32021304 -117495733 + RMER19B LTR ERVK 15 891 -11 2 829 1865 156 6 38 chr6 32021517 32021857 -117495180 - ORR1A4 LTR MaLR 0 329 1 2 829 405 127 0 0 chr6 32023771 32023834 -117493203 + MT2B LTR ERVL 1 63 -538 2 829 367 266 0 5 chr6 32023841 32023857 -117493180 + ORR1B1-int LTR MaLR 621 674 -835 2 829 469 164 16 91 chr6 32023857 32023870 -117493167 + MT2B LTR ERVL 154 157 -444 2 829 605 211 16 8 chr6 32023870 32023994 -117493043 + B1_Mur3 SINE Alu 3 127 -22 2 829 367 266 0 5 chr6 32023994 32024030 -117493007 + ORR1B1-int LTR MaLR 675 808 -701 2 829 1064 111 29 0 chr6 32024022 32024193 -117492844 + ORR1B1 LTR MaLR 211 386 -8 2 829 1189 231 193 54 chr6 32024891 32025389 -117491648 - RMER2 LTR ERV1 0 567 1 2 829 1788 166 125 31 chr6 32026499 32026859 -117490178 + ORR1B1 LTR MaLR 1 394 0 2 829 393 22 0 0 chr6 32026862 32026908 -117490129 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 829 928 280 42 35 chr6 32026911 32027200 -117489837 - B4 SINE B4 0 292 2 3 829 1176 216 5 3 chr6 32027354 32027618 -117489419 + L1_Mur2 LINE L1 891 1160 -5822 3 829 3957 84 4 7 chr6 32027617 32028238 -117488799 + L1Md_F3 LINE L1 439 1234 -5382 3 829 24813 59 178 4 chr6 32028237 32032597 -117484440 + L1Md_F3 LINE L1 1338 6518 -66 3 829 18744 159 29 34 chr6 32032596 32036219 -117480818 + Lx5 LINE L1 1955 5559 -318 3 829 1176 200 157 16 chr6 32036219 32036524 -117480513 - ORR1B1 LTR MaLR 0 394 47 3 829 6843 201 48 25 chr6 32036549 32037963 -117479074 + Lx5 LINE L1 5601 7047 -3 3 829 588 116 0 0 chr6 32038472 32038567 -117478470 + (TG)n Simple_repeat Simple_repeat 1 95 0 3 829 9191 55 13 8 chr6 32038571 32039789 -117477248 + MusHAL1 LINE L1 1464 2687 -25 3 829 762 83 0 0 chr6 32039892 32040012 -117477025 + (GA)n Simple_repeat Simple_repeat 1 120 0 3 829 303 285 14 133 chr6 32040070 32040283 -117476754 - RMER13B LTR ERVK -84 824 659 3 829 560 341 24 0 chr6 32040283 32040491 -117476546 - Lx9 LINE L1 -796 6848 6636 4 829 216 0 0 0 chr6 32040650 32040674 -117476363 + (A)n Simple_repeat Simple_repeat 1 24 0 4 829 372 22 0 0 chr6 32041195 32041240 -117475797 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 829 1049 239 14 25 chr6 32041412 32041687 -117475350 - L1MA4A LINE L1 -367 5936 5665 4 829 282 263 46 57 chr6 32043311 32043459 -117473578 - MIRm SINE MIR -71 197 43 4 829 36028 36 1 0 chr6 32043592 32049655 -117467382 + L1Md_T LINE L1 1 5589 -297 4 829 9146 7 0 0 chr6 32049655 32050651 -117466386 + L1Md_T LINE L1 5590 6585 0 4 829 495 0 0 0 chr6 32051043 32051098 -117465939 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 829 277 318 23 23 chr6 32051119 32051206 -117465831 - RSINE1 SINE B4 -30 135 49 4 829 516 59 0 0 chr6 32051930 32051998 -117465039 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 829 409 236 35 29 chr6 32052018 32052188 -117464849 + (TG)n Simple_repeat Simple_repeat 1 171 0 4 829 198 103 0 0 chr6 32052593 32052622 -117464415 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 4 829 2032 100 55 3 chr6 32052923 32053233 -117463804 - ORR1A3 LTR MaLR 0 326 1 5 829 1271 200 184 3 chr6 32053387 32053708 -117463329 - MTEa LTR MaLR 0 379 1 5 829 719 282 45 55 chr6 32053749 32054178 -117462859 + RLTR11A2 LTR ERVK 7 425 -16 5 829 252 337 219 0 chr6 32055102 32055289 -117461748 + Tigger5 DNA MER2_type 10 237 -2169 5 829 208 0 0 59 chr6 32055347 32055381 -117461656 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 829 282 304 109 23 chr6 32056540 32056715 -117460322 + L1ME2z LINE L1 5908 6097 -347 5 829 384 267 93 36 chr6 32056730 32056955 -117460082 + L1ME2z LINE L1 6057 6294 -150 5 829 300 53 0 0 chr6 32056983 32057021 -117460016 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 829 576 93 0 0 chr6 32057021 32057118 -117459919 + (GA)n Simple_repeat Simple_repeat 2 98 0 5 829 459 286 14 50 chr6 32057288 32057428 -117459609 + B4 SINE B4 118 252 -40 5 829 366 312 110 31 chr6 32057432 32057750 -117459287 - RMER17C LTR ERVK -45 365 23 6 829 243 0 0 0 chr6 32059220 32059247 -117457790 + (A)n Simple_repeat Simple_repeat 1 27 0 6 829 248 224 20 0 chr6 32059976 32060025 -117457012 + ID4 SINE ID 2 51 -32 6 829 549 80 0 0 chr6 32060044 32060119 -117456918 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 6 829 1326 97 0 0 chr6 32060119 32060479 -117456558 + (TAGG)n Simple_repeat Simple_repeat 1 360 0 6 829 945 83 0 0 chr6 32060479 32060611 -117456426 + (TAGA)n Simple_repeat Simple_repeat 1 132 0 6 829 321 232 0 42 chr6 32061772 32061844 -117455193 + C-rich Low_complexity Low_complexity 6 74 0 6 829 657 130 35 29 chr6 32061844 32062018 -117455019 + CT-rich Low_complexity Low_complexity 3 177 0 6 829 463 272 65 13 chr6 32062287 32062440 -117454597 - MTD LTR MaLR -15 406 246 6 829 2957 207 72 7 chr6 32062440 32063236 -117453801 + Lx4B LINE L1 6150 7000 0 6 829 1060 247 73 16 chr6 32063239 32063486 -117453551 - MTD LTR MaLR -148 271 11 6 829 288 0 0 0 chr6 32064426 32064458 -117452579 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 829 360 111 0 0 chr6 32064640 32064694 -117452343 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 829 335 312 0 0 chr6 32065594 32065687 -117451350 + BC1_Mm scRNA scRNA 3 95 -57 7 829 583 176 210 0 chr6 32065884 32066003 -117451034 + B1_Mur4 SINE Alu 2 145 -5 7 829 1764 189 144 8 chr6 32066289 32066518 -117450519 + RMER4B LTR ERVK 1 274 -311 7 829 309 54 54 0 chr6 32066518 32066574 -117450463 + (TTGG)n Simple_repeat Simple_repeat 4 62 0 7 829 1764 204 117 56 chr6 32066574 32066822 -117450215 + RMER4B LTR ERVK 252 449 -17 7 829 688 261 63 137 chr6 32067052 32067454 -117449583 + MLT2B4 LTR ERVL 1 479 -77 7 829 288 0 0 0 chr6 32068160 32068192 -117448845 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 829 1226 54 0 0 chr6 32068210 32068357 -117448680 - B1_Mus2 SINE Alu 0 147 1 7 829 241 275 20 108 chr6 32068519 32068621 -117448416 - MLT1N2 LTR MaLR -321 241 149 7 829 716 403 40 20 chr6 32068629 32069130 -117447907 + LTR33 LTR ERVL 1 511 -4 8 829 290 264 87 32 chr6 32069312 32069531 -117447506 + L1M5 LINE L1 4144 4374 -1772 8 829 353 194 62 44 chr6 32069533 32069646 -117447391 + L1MB2 LINE L1 5535 5649 -522 8 829 180 253 22 11 chr6 32069649 32069741 -117447296 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 8 829 649 285 75 144 chr6 32069752 32069852 -117447185 - Lx8 LINE L1 -902 6571 6474 8 829 558 0 0 0 chr6 32069852 32069914 -117447123 + (TC)n Simple_repeat Simple_repeat 2 63 0 8 829 219 69 0 0 chr6 32069914 32069942 -117447095 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 829 649 285 75 144 chr6 32069942 32070397 -117446640 - Lx8 LINE L1 -1000 6473 6054 8 829 1680 328 84 30 chr6 32070493 32071381 -117445656 + Lx8 LINE L1 6536 7471 -2 8 829 411 106 0 0 chr6 32071512 32071578 -117445459 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 829 586 276 48 33 chr6 32071653 32071923 -117445114 + L1MB2 LINE L1 5781 6054 -117 8 829 1048 234 0 0 chr6 32071941 32072129 -117444908 + B3 SINE B2 24 211 -5 8 829 257 272 33 0 chr6 32072201 32072293 -117444744 + L1M5 LINE L1 4399 4493 -1653 8 829 270 372 52 10 chr6 32072304 32072497 -117444540 + L1M5 LINE L1 4740 4940 -1206 8 829 884 259 15 0 chr6 32072753 32072958 -117444079 + B3 SINE B2 1 208 -8 9 829 3284 160 11 2 chr6 32072958 32073502 -117443535 + Lx LINE L1 6106 6654 0 9 829 850 175 172 16 chr6 32073620 32073806 -117443231 - B3 SINE B2 -1 215 1 9 829 398 368 102 19 chr6 32073823 32074218 -117442819 + L1M5 LINE L1 5324 5741 -437 8 829 609 319 81 25 chr6 32074487 32074770 -117442267 - MER2 DNA MER2_type -25 320 22 9 829 246 237 33 33 chr6 32074775 32074836 -117442201 + L1ME2 LINE L1 6005 6065 -99 9 829 548 0 0 29 chr6 32074851 32074920 -117442117 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 9 829 458 303 118 11 chr6 32075400 32075680 -117441357 + MER5C DNA MER1_type 1 310 -3 9 829 2076 55 0 0 chr6 32077350 32077606 -117439431 + L1Md_F2 LINE L1 6327 6582 0 9 829 1481 42 11 5 chr6 32077888 32078077 -117438960 + MTB LTR MaLR 211 400 0 9 829 744 188 34 141 chr6 32078153 32078345 -117438692 + Lx7 LINE L1 5091 5257 -623 9 829 261 0 0 0 chr6 32078345 32078374 -117438663 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 829 744 188 34 141 chr6 32078374 32078472 -117438565 + Lx7 LINE L1 5258 5350 -530 9 829 251 133 18 0 chr6 32078456 32078529 -117438508 + L1_Mus2 LINE L1 6508 6581 -1 1 829 385 292 19 31 chr6 32078550 32078709 -117438328 + Lx7 LINE L1 7509 7665 -31 1 829 1139 204 0 0 chr6 32078736 32078947 -117438090 + Lx7 LINE L1 5352 5562 -318 9 829 3554 138 18 38 chr6 32078948 32079319 -117437718 + L1_Mm LINE L1 5217 5586 -297 1 829 8283 44 1 1 chr6 32079319 32080302 -117436735 + L1Md_F2 LINE L1 5588 6570 -12 1 829 270 0 0 0 chr6 32080306 32080336 -117436701 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 829 3554 138 18 38 chr6 32080336 32080585 -117436452 + L1_Mm LINE L1 5587 5829 -54 1 829 2384 183 57 48 chr6 32080592 32081137 -117435900 + RLTR20B3 LTR ERVK 1 550 -27 1 829 1615 277 150 25 chr6 32081250 32082274 -117434763 + Lx7 LINE L1 5960 7111 -585 9 829 274 316 0 40 chr6 32082307 32082406 -117434631 + Lx7 LINE L1 7188 7282 -414 9 829 569 168 105 9 chr6 32082483 32082597 -117434440 - B1_Mur2 SINE Alu -3 146 22 1 829 282 291 35 11 chr6 32082676 32082763 -117434274 + RMER15 LTR ERVL 300 388 -187 1 829 558 0 0 0 chr6 32082777 32082839 -117434198 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 1 829 21704 62 5 4 chr6 32082840 32086350 -117430687 - L1Md_F2 LINE L1 -16 6566 3050 1 829 322 289 152 13 chr6 32086350 32086508 -117430529 + RMER15 LTR ERVL 337 516 -59 1 829 245 29 0 29 chr6 32086511 32086546 -117430491 + (CCCCCT)n Simple_repeat Simple_repeat 1 34 0 1 829 4127 322 65 34 chr6 32086721 32088501 -117428536 + RMER15-int LTR ERVL 315 2150 -2849 1 829 463 311 16 25 chr6 32088506 32088628 -117428409 - B1F SINE Alu 0 149 29 1 829 476 111 12 0 chr6 32088628 32088709 -117428328 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 829 2946 235 153 34 chr6 32088991 32089905 -117427132 + Lx8 LINE L1 6370 7383 -90 1 829 342 0 0 0 chr6 32089905 32089943 -117427094 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 829 2946 235 153 34 chr6 32089943 32090009 -117427028 + Lx8 LINE L1 7384 7466 -7 1 829 665 296 124 13 chr6 32090103 32090401 -117426636 + Lx8 LINE L1 7105 7435 -38 1 829 1734 169 80 18 chr6 32090402 32090604 -117426433 - RMER19B LTR ERVK 0 902 705 1 829 243 0 0 0 chr6 32090604 32090631 -117426406 + (CAG)n Simple_repeat Simple_repeat 2 28 0 1 829 1734 169 80 18 chr6 32090631 32090766 -117426271 - RMER19B LTR ERVK -198 704 546 1 829 364 259 0 24 chr6 32091956 32092039 -117424998 + PB1D10 SINE Alu 22 102 -15 1 829 203 128 106 0 chr6 32092039 32092086 -117424951 + GA-rich Low_complexity Low_complexity 1 52 0 1 829 338 204 18 18 chr6 32092101 32092211 -117424826 + GA-rich Low_complexity Low_complexity 2 111 0 1 829 287 359 93 12 chr6 32092288 32092460 -117424577 - MLT1I LTR MaLR -8 403 218 1 829 27 73 0 0 chr6 32094277 32094332 -117422705 + AT_rich Low_complexity Low_complexity 1 55 0 1 829 249 33 0 0 chr6 32094534 32094564 -117422473 + (T)n Simple_repeat Simple_repeat 1 30 0 1 829 247 250 19 0 chr6 32095653 32095705 -117421332 + G-rich Low_complexity Low_complexity 1 53 0 1 829 279 0 0 0 chr6 32098123 32098154 -117418883 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 829 314 311 81 72 chr6 32102103 32102325 -117414712 - HAL1-3A_ME LINE L1 -424 2434 2211 1 829 300 299 70 63 chr6 32102371 32102514 -117414523 + B1F SINE Alu 1 144 -5 1 829 227 255 0 0 chr6 32102516 32102567 -117414470 + ID4_ SINE ID 20 70 -13 1 829 462 18 0 0 chr6 32105237 32105292 -117411745 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 829 279 0 0 0 chr6 32107346 32107377 -117409660 + (CATG)n Simple_repeat Simple_repeat 1 31 0 1 829 1045 275 14 52 chr6 32108848 32109136 -117407901 - B4 SINE B4 -8 284 8 1 829 403 225 285 8 chr6 32109154 32109284 -117407753 - ID_B1 SINE B4 -8 216 51 1 829 204 222 14 113 chr6 32109812 32109883 -117407154 - MIRm SINE MIR -1 275 212 1 830 900 281 42 25 chr6 32113034 32113319 -117403718 - B4A SINE B4 0 292 3 1 830 181 83 27 27 chr6 32114516 32114553 -117402484 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 1 830 441 0 0 0 chr6 32114553 32114602 -117402435 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 830 1153 258 19 4 chr6 32114604 32114861 -117402176 - B4 SINE B4 -30 262 2 1 830 441 0 0 0 chr6 32116418 32116467 -117400570 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 830 238 288 61 0 chr6 32117851 32117917 -117399120 - MER91C DNA Tip100 -70 70 1 1 830 201 108 0 0 chr6 32118377 32118414 -117398623 + (A)n Simple_repeat Simple_repeat 1 37 0 1 830 293 133 0 32 chr6 32119614 32119676 -117397361 + (TTCA)n Simple_repeat Simple_repeat 4 63 0 1 830 759 245 6 25 chr6 32120238 32120401 -117396636 + RSINE1 SINE B4 3 162 -3 1 830 26 64 0 0 chr6 32120410 32120457 -117396580 + AT_rich Low_complexity Low_complexity 1 47 0 1 830 2306 186 42 34 chr6 32121476 32121999 -117395038 + RLTR11A2 LTR ERVK 1 527 0 1 830 455 291 7 34 chr6 32122635 32122781 -117394256 + ID_B1 SINE B4 80 221 -3 1 830 234 318 45 0 chr6 32122791 32122857 -117394180 + ID4_ SINE ID 2 70 -13 1 830 440 284 0 54 chr6 32123200 32123330 -117393707 - ID_B1 SINE B4 -8 216 94 1 830 232 220 75 142 chr6 32123267 32123373 -117393664 - MT2B2 LTR ERVL -352 232 134 1 830 183 156 0 0 chr6 32123613 32123645 -117393392 + GA-rich Low_complexity Low_complexity 2 33 0 1 830 1009 250 113 35 chr6 32124412 32124731 -117392306 + MLT2D LTR ERVL 1 344 -70 1 830 459 308 54 29 chr6 32124784 32124988 -117392049 - Tigger5 DNA MER2_type -102 2304 2096 1 830 609 115 0 0 chr6 32125631 32125727 -117391310 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 1 830 669 25 0 0 chr6 32125727 32125806 -117391231 + (GGGA)n Simple_repeat Simple_repeat 2 80 0 1 830 231 301 27 27 chr6 32126347 32126362 -117390675 + MamGypLTR2 LTR Gypsy 1045 1119 -70 1 830 237 250 33 0 chr6 32126362 32126422 -117390615 + LTR81B LTR ERV1? 1262 1323 -70 1 830 386 335 45 34 chr6 32127498 32127674 -117389363 - MIRb SINE MIR -38 230 53 1 830 852 129 4 0 chr6 32128958 32129198 -117387839 + (TC)n Simple_repeat Simple_repeat 1 241 0 1 830 459 0 0 0 chr6 32129354 32129405 -117387632 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 830 207 277 0 0 chr6 32132134 32132181 -117384856 + CT-rich Low_complexity Low_complexity 1 47 0 1 830 620 281 77 15 chr6 32132991 32133186 -117383851 + MER3 DNA MER1_type 3 209 0 1 830 278 239 84 0 chr6 32133547 32133618 -117383419 - MER3 DNA MER1_type -94 115 39 1 830 557 296 15 22 chr6 32134467 32134602 -117382435 + ORR1E LTR MaLR 1 134 -225 1 830 401 279 0 18 chr6 32134609 32134722 -117382315 + ORR1E LTR MaLR 255 365 -14 1 830 3393 36 5 5 chr6 32135718 32136114 -117380923 + MTA_Mm LTR MaLR 1 396 0 1 830 258 39 58 19 chr6 32137097 32137149 -117379888 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 830 216 239 133 53 chr6 32137327 32137402 -117379635 + MIRb SINE MIR 11 91 -177 1 830 254 337 20 10 chr6 32137442 32137544 -117379493 - MIR SINE MIR -10 252 150 1 830 310 328 39 23 chr6 32138986 32139114 -117377923 + MIRb SINE MIR 113 242 -26 1 830 270 56 0 0 chr6 32140099 32140135 -117376902 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 1 830 216 67 0 0 chr6 32140661 32140691 -117376346 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 830 328 331 88 6 chr6 32140997 32141167 -117375870 + MIR SINE MIR 34 217 -45 1 830 1827 206 22 3 chr6 32141603 32141958 -117375079 + ORR1D1 LTR MaLR 1 362 -12 1 830 765 280 88 68 chr6 32142418 32142493 -117374544 + B4 SINE B4 1 69 -223 1 830 468 0 0 0 chr6 32142493 32142545 -117374492 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 830 765 280 88 68 chr6 32142545 32142718 -117374319 + B4 SINE B4 70 254 -38 1 830 462 322 101 101 chr6 32143919 32144285 -117372752 + MTEb LTR MaLR 3 368 -11 1 830 396 0 0 0 chr6 32145875 32145919 -117371118 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 830 239 291 59 59 chr6 32145963 32146098 -117370939 - RLTR22_Mur LTR ERVK -390 1458 1324 1 830 991 38 15 0 chr6 32146643 32146775 -117370262 + (TC)n Simple_repeat Simple_repeat 1 134 0 1 830 226 318 22 22 chr6 32147475 32147565 -117369472 + MLT1A1 LTR MaLR 307 396 -12 1 830 960 248 20 10 chr6 32149793 32149997 -117367040 - MER58A DNA MER1_type 0 224 19 1 830 226 269 0 19 chr6 32150675 32150728 -117366309 - B1F1 SINE Alu -97 52 1 1 830 328 341 55 35 chr6 32151118 32151490 -117365547 + MER31B LTR ERV1 27 461 -5 1 830 324 321 105 19 chr6 32152445 32152634 -117364403 - MIR SINE MIR -37 239 33 1 830 874 83 0 25 chr6 32153960 32154121 -117362916 + (TCTCTG)n Simple_repeat Simple_repeat 6 162 0 1 830 389 336 25 0 chr6 32155731 32155850 -117361187 - MIR SINE MIR -76 186 65 1 830 334 361 122 55 chr6 32156367 32156857 -117360180 - L1ME4a LINE L1 -155 5969 5447 1 830 396 0 0 0 chr6 32157243 32157287 -117359750 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1 830 349 232 14 0 chr6 32157287 32157356 -117359681 - ID4 SINE ID -10 73 4 1 830 399 41 0 0 chr6 32157407 32157456 -117359581 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 830 26 0 0 0 chr6 32157462 32157488 -117359549 + AT_rich Low_complexity Low_complexity 1 26 0 1 830 462 298 16 0 chr6 32157740 32157864 -117359173 + Tigger5 DNA MER2_type 88 213 -2193 1 830 287 294 11 34 chr6 32157860 32157948 -117359089 + Tigger5 DNA MER2_type 2299 2384 -22 1 830 304 250 16 0 chr6 32157950 32158014 -117359023 + ID4 SINE ID 2 66 -17 1 830 1424 112 50 18 chr6 32158210 32158428 -117358609 + URR1B DNA MER1_type 1 225 0 1 830 499 238 40 24 chr6 32158546 32158671 -117358366 - B1F1 SINE Alu -8 141 15 1 830 213 194 0 0 chr6 32158729 32158765 -117358272 + polypurine Low_complexity Low_complexity 3 38 0 1 830 502 266 167 0 chr6 32159083 32159275 -117357762 - ID_B1 SINE B4 0 224 1 1 830 364 342 115 4 chr6 32159658 32159902 -117357135 - L1ME4a LINE L1 -1136 5010 4740 1 830 662 249 153 113 chr6 32163167 32163241 -117353796 + MLT1B LTR MaLR 1 52 -338 1 830 900 243 90 87 chr6 32163241 32163597 -117353440 - ORR1E LTR MaLR -2 357 1 1 830 662 251 154 107 chr6 32163597 32163893 -117353144 + MLT1B LTR MaLR 53 367 -23 1 830 277 170 132 0 chr6 32164105 32164158 -117352879 - L2a LINE L2 -22 3404 3345 1 830 23 0 0 0 chr6 32164189 32164212 -117352825 + AT_rich Low_complexity Low_complexity 1 23 0 1 830 189 121 0 0 chr6 32164544 32164577 -117352460 + (CTCTG)n Simple_repeat Simple_repeat 5 37 0 2 830 1775 238 53 73 chr6 32166061 32166663 -117350374 + Lx8 LINE L1 6875 7464 -9 2 830 771 64 0 0 chr6 32167564 32167674 -117349363 + (TG)n Simple_repeat Simple_repeat 2 111 0 2 830 331 140 205 45 chr6 32168008 32168120 -117348917 - Tigger7 DNA MER2_type -94 2397 2268 2 830 675 171 84 15 chr6 32168189 32168320 -117348717 + B1_Mur1 SINE Alu 10 149 0 2 830 277 337 79 0 chr6 32168413 32168514 -117348523 - Tigger7 DNA MER2_type -2381 110 2 2 830 3048 148 28 8 chr6 32168514 32169004 -117348033 + RMER15 LTR ERVL 76 575 0 2 830 609 14 0 0 chr6 32169758 32169828 -117347209 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 830 181 146 143 24 chr6 32170059 32170101 -117346936 - MIRb SINE MIR 0 268 222 2 830 320 305 63 58 chr6 32172780 32172954 -117344083 + Arthur1A DNA Tip100 1 175 -2 2 830 224 308 13 0 chr6 32172970 32173038 -117343999 + CT-rich Low_complexity Low_complexity 13 81 0 2 830 348 307 44 0 chr6 32173038 32173152 -117343885 - PB1D7 SINE Alu -1 119 1 2 830 199 242 15 61 chr6 32173833 32173899 -117343138 + MER5A DNA MER1_type 103 165 -24 2 830 968 285 42 57 chr6 32175309 32175424 -117341613 + L1MB3 LINE L1 5649 5765 -418 2 830 1356 23 6 11 chr6 32175424 32175602 -117341435 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 2 830 968 274 99 53 chr6 32175602 32175982 -117341055 + L1MB3 LINE L1 5766 6167 -4 2 830 198 91 0 0 chr6 32177128 32177161 -117339876 + (A)n Simple_repeat Simple_repeat 1 33 0 2 830 378 0 0 0 chr6 32177735 32177777 -117339260 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 2 830 3222 182 38 22 chr6 32177793 32178394 -117338643 - Lx5 LINE L1 -52 6998 6388 2 830 358 266 0 12 chr6 32178814 32178894 -117338143 + MER21B LTR ERV1 6 84 -779 2 830 229 238 0 0 chr6 32179033 32179075 -117337962 + MER21B LTR ERV1 222 263 -600 2 830 245 289 0 26 chr6 32179206 32179261 -117337776 + MER21B LTR ERV1 266 318 -545 2 830 772 256 60 5 chr6 32179261 32179446 -117337591 + B3A SINE B2 4 198 0 2 830 950 306 57 57 chr6 32179524 32179895 -117337142 + MER21B LTR ERV1 379 749 -114 2 830 288 0 0 0 chr6 32180103 32180135 -117336902 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 830 369 62 0 0 chr6 32183068 32183116 -117333921 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 830 1057 237 118 15 chr6 32183126 32183396 -117333641 - Lx9 LINE L1 -220 7424 7127 2 830 681 13 0 0 chr6 32183834 32183912 -117333125 + (GAA)n Simple_repeat Simple_repeat 3 80 0 2 830 587 14 14 0 chr6 32186637 32186709 -117330328 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 830 239 196 0 19 chr6 32187877 32187929 -117329108 + GA-rich Low_complexity Low_complexity 1 51 0 2 830 727 282 149 54 chr6 32188442 32188913 -117328124 - L1MA5 LINE L1 -128 6028 5548 2 830 1393 83 5 10 chr6 32188913 32189107 -117327930 - B2_Mm2 SINE B2 -2 193 1 2 830 727 275 152 50 chr6 32189107 32189211 -117327826 - L1MA5 LINE L1 -609 5547 5415 2 830 543 31 0 0 chr6 32190202 32190267 -117326770 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 830 258 282 25 13 chr6 32192157 32192236 -117324801 + MIRc SINE MIR 76 155 -113 2 830 229 255 0 0 chr6 32193340 32193391 -117323646 + GA-rich Low_complexity Low_complexity 6 56 0 2 830 830 135 0 7 chr6 32193707 32193849 -117323188 + (GAA)n Simple_repeat Simple_repeat 3 143 0 2 830 273 386 23 8 chr6 32193894 32194022 -117323015 + ORR1E LTR MaLR 20 149 -210 2 830 818 113 7 0 chr6 32194450 32194601 -117322436 + (TC)n Simple_repeat Simple_repeat 2 153 0 2 830 324 0 0 0 chr6 32194670 32194706 -117322331 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 830 315 0 0 0 chr6 32194829 32194864 -117322173 + (TATG)n Simple_repeat Simple_repeat 1 35 0 2 830 1119 270 4 16 chr6 32194919 32195171 -117321866 - B4A SINE B4 -43 249 1 2 830 564 29 0 0 chr6 32195246 32195316 -117321721 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 830 462 18 0 0 chr6 32196726 32196781 -117320256 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 830 456 156 0 0 chr6 32197110 32197200 -117319837 + (TG)n Simple_repeat Simple_repeat 2 91 0 2 830 1293 322 69 89 chr6 32197969 32198633 -117318404 - MER82 DNA MER2_type -2 651 1 2 830 928 224 60 0 chr6 32200358 32200559 -117316478 + B3 SINE B2 1 213 -3 2 830 243 214 27 54 chr6 32201408 32201482 -117315555 - ORR1A1-int LTR MaLR -1516 276 205 2 830 30 27 0 0 chr6 32202122 32202159 -117314878 + AT_rich Low_complexity Low_complexity 1 37 0 2 830 591 247 11 74 chr6 32202638 32202813 -117314224 - RSINE1 SINE B4 0 165 2 2 830 423 252 30 10 chr6 32203014 32203114 -117313923 + Charlie19a DNA Charlie 2 103 -283 2 830 596 124 57 24 chr6 32203163 32203287 -117313750 + Charlie19a DNA Charlie 256 383 -3 2 830 314 306 99 46 chr6 32204427 32204578 -117312459 + MIR3 SINE MIR 44 202 -6 2 830 610 275 110 10 chr6 32205780 32205989 -117311048 + L1MB2 LINE L1 5599 5828 -343 2 830 442 210 70 0 chr6 32205991 32206091 -117310946 + PB1D10 SINE Alu 11 117 0 2 830 371 268 147 35 chr6 32206186 32206418 -117310619 + L1MB2 LINE L1 5923 6180 -3 2 830 216 211 0 0 chr6 32206959 32206997 -117310040 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 2 830 419 275 261 5 chr6 32207005 32207229 -117309808 - B4 SINE B4 -4 288 8 2 830 230 299 0 0 chr6 32207241 32207308 -117309729 + (CAT)n Simple_repeat Simple_repeat 2 68 0 2 830 207 195 24 0 chr6 32207859 32207900 -117309137 + GA-rich Low_complexity Low_complexity 4 45 0 2 830 240 345 60 26 chr6 32209847 32209963 -117307074 - MIR3 SINE MIR -29 179 60 2 830 240 255 108 38 chr6 32210299 32210431 -117306606 + MIRc SINE MIR 5 137 -139 2 830 225 83 0 0 chr6 32210607 32210643 -117306394 + (CATG)n Simple_repeat Simple_repeat 3 38 0 2 830 353 217 120 8 chr6 32213084 32213215 -117303822 - L1_Rod LINE L1 -27 5820 5690 2 830 250 228 0 50 chr6 32213216 32213276 -117303761 - B1F1 SINE Alu -90 59 3 2 830 406 229 29 116 chr6 32213391 32213529 -117303508 + MT2B LTR ERVL 153 278 -323 2 830 865 135 7 15 chr6 32213416 32213551 -117303486 + B1_Mus2 SINE Alu 9 142 -5 2 830 460 188 30 0 chr6 32213655 32213756 -117303281 + URR1B DNA MER1_type 56 159 -66 2 830 251 180 0 20 chr6 32214571 32214622 -117302415 + MIRc SINE MIR 116 165 -103 2 830 932 298 76 4 chr6 32215760 32216023 -117301014 - B4A SINE B4 -6 286 5 2 830 302 253 114 11 chr6 32216851 32216939 -117300098 + RSINE1 SINE B4 28 124 -41 2 830 453 66 0 0 chr6 32216939 32217000 -117300037 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 830 1320 73 0 0 chr6 32217017 32217194 -117299843 + (GA)n Simple_repeat Simple_repeat 2 178 0 2 830 436 330 48 63 chr6 32217461 32217668 -117299369 - MIRc SINE MIR -31 237 34 2 830 667 184 0 0 chr6 32218931 32219040 -117297997 + ORR1C2 LTR MaLR 5 113 -271 2 830 229 179 0 0 chr6 32219035 32219074 -117297963 + ORR1C2 LTR MaLR 344 382 -2 2 830 480 286 136 0 chr6 32219360 32219500 -117297537 + RSINE1 SINE B4 3 161 -4 2 830 22 0 0 0 chr6 32219514 32219536 -117297501 + AT_rich Low_complexity Low_complexity 1 22 0 2 830 918 302 181 9 chr6 32219924 32220475 -117296562 + L1MC1 LINE L1 5686 6331 -2 2 830 508 279 185 12 chr6 32221309 32221552 -117295485 + RMER15 LTR ERVL 275 559 -16 2 830 226 309 10 58 chr6 32221638 32221741 -117295296 + MIR SINE MIR 51 148 -60 2 830 21 36 0 0 chr6 32221858 32221886 -117295151 + AT_rich Low_complexity Low_complexity 1 28 0 2 830 261 250 88 0 chr6 32223109 32223189 -117293848 + MIRb SINE MIR 99 185 -83 2 830 199 269 24 49 chr6 32223391 32223473 -117293564 + MIRc SINE MIR 48 127 -141 2 830 814 295 12 5 chr6 32224056 32224308 -117292729 + MTE2b LTR MaLR 1 256 -123 2 830 186 103 0 0 chr6 32224829 32224858 -117292179 + (CAA)n Simple_repeat Simple_repeat 1 29 0 2 830 1028 281 7 39 chr6 32225742 32226027 -117291010 + B4 SINE B4 3 278 -14 2 830 570 296 17 0 chr6 32226594 32226770 -117290267 + MER2 DNA MER2_type 166 344 -1 2 830 1117 192 5 9 chr6 32227647 32227868 -117289169 - URR1B DNA MER1_type -5 220 1 2 830 386 288 35 81 chr6 32227868 32227908 -117289129 + CYRA11_Mm Unknown Y-chromosome 176 424 -193 2 830 298 222 47 100 chr6 32228558 32228728 -117288309 + Lx7 LINE L1 7362 7522 -174 2 830 369 262 207 28 chr6 32228916 32229061 -117287976 - B4 SINE B4 -40 252 82 2 830 690 231 69 89 chr6 32229062 32229184 -117287853 - Lx7 LINE L1 -1 7695 7578 2 830 500 45 15 0 chr6 32229184 32229251 -117287786 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 830 690 231 69 89 chr6 32229251 32229475 -117287562 - Lx7 LINE L1 -119 7577 7356 2 830 220 192 13 27 chr6 32229480 32229555 -117287482 + GA-rich Low_complexity Low_complexity 2 75 0 2 830 229 307 39 39 chr6 32229600 32229678 -117287359 - B4 SINE B4 -206 86 9 2 830 415 264 18 28 chr6 32232068 32232177 -117284860 + PB1D10 SINE Alu 3 110 -7 2 830 233 339 105 0 chr6 32232508 32232632 -117284405 + MIR SINE MIR 57 193 -69 2 830 373 269 82 9 chr6 32234569 32234789 -117282248 + L1ME1 LINE L1 5209 5440 -739 2 830 610 246 29 7 chr6 32234858 32234997 -117282040 - ID_B1 SINE B4 0 224 83 2 830 554 319 162 20 chr6 32235009 32235409 -117281628 + L1ME1 LINE L1 5474 5930 -249 2 830 405 0 0 0 chr6 32238377 32238422 -117278615 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 830 181 262 16 32 chr6 32239051 32239114 -117277923 + L2c LINE L2 3279 3340 -47 2 830 225 388 32 54 chr6 32239176 32239397 -117277640 - Charlie17a DNA MER1_type -3 216 1 2 830 323 267 196 11 chr6 32239687 32239876 -117277161 - MER112 DNA MER1_type -6 255 32 2 830 485 264 136 40 chr6 32240319 32240629 -117276408 + RMER20B LTR ERVK 140 470 -46 2 830 642 309 101 30 chr6 32241700 32241914 -117275123 + B4A SINE B4 1 235 -57 2 830 2195 130 104 18 chr6 32241914 32242298 -117274739 - MTC LTR MaLR 0 421 5 2 830 642 309 101 30 chr6 32242298 32242350 -117274687 + B4A SINE B4 236 286 -6 2 830 247 326 20 10 chr6 32242391 32242490 -117274547 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 830 1297 308 84 30 chr6 32242655 32243461 -117273576 - Charlie7 DNA MER1_type -168 2444 1595 2 830 31 0 0 0 chr6 32243483 32243514 -117273523 + AT_rich Low_complexity Low_complexity 1 31 0 2 831 353 98 413 0 chr6 32243831 32243923 -117273114 + Lx9 LINE L1 7515 7644 0 3 831 565 97 18 9 chr6 32244036 32244175 -117272862 + L1_Mus4 LINE L1 6507 6636 0 3 831 808 216 57 0 chr6 32244175 32244351 -117272686 + B3 SINE B2 29 214 -2 3 831 23 0 0 0 chr6 32245741 32245764 -117271273 + AT_rich Low_complexity Low_complexity 1 23 0 3 831 317 300 0 43 chr6 32246589 32246704 -117270333 + MLT1A1 LTR MaLR 1 110 -298 3 831 873 29 0 0 chr6 32246788 32246892 -117270145 + (TTC)n Simple_repeat Simple_repeat 3 106 0 3 831 630 184 0 9 chr6 32246944 32247059 -117269978 - B2_Mm2 SINE B2 -80 115 2 3 831 297 228 90 21 chr6 32247199 32247293 -117269744 + MTEa LTR MaLR 278 378 -1 3 831 711 341 57 42 chr6 32247584 32248062 -117268975 + MT2A LTR ERVL 3 487 -46 3 831 457 299 75 86 chr6 32248258 32248620 -117268417 + ORR1E LTR MaLR 2 359 0 3 831 396 0 0 0 chr6 32250333 32250377 -117266660 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 3 831 315 0 0 0 chr6 32250597 32250632 -117266405 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 3 831 218 111 0 53 chr6 32250632 32250689 -117266348 + A-rich Low_complexity Low_complexity 1 54 0 3 831 911 240 14 14 chr6 32250691 32250902 -117266135 - B3 SINE B2 -5 211 1 3 831 865 241 7 82 chr6 32252776 32253079 -117263958 + RLTR11B LTR ERVK 7 286 -167 3 831 622 203 0 99 chr6 32253103 32253294 -117263743 + RLTR11B LTR ERVK 267 438 -15 3 831 396 0 0 0 chr6 32254702 32254746 -117262291 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 831 210 313 32 80 chr6 32255014 32255139 -117261898 - L2a LINE L2 -2 3424 3306 3 831 908 275 17 130 chr6 32255725 32256147 -117260890 + MTE2a LTR MaLR 1 374 -5 3 831 374 346 138 11 chr6 32256294 32256648 -117260389 - L2a LINE L2 -588 2831 2433 3 831 310 392 22 0 chr6 32257028 32257209 -117259828 + MER58A DNA MER1_type 38 222 -2 3 831 1303 240 67 35 chr6 32257403 32257745 -117259292 + MTD LTR MaLR 8 366 -53 3 831 1641 21 16 0 chr6 32257745 32257933 -117259104 - B2_Mm1a SINE B2 -1 192 2 3 831 1303 245 72 52 chr6 32257933 32257987 -117259050 + MTD LTR MaLR 328 395 -24 3 831 705 284 68 60 chr6 32258205 32258570 -117258467 + ORR1E LTR MaLR 3 379 0 3 831 1399 265 42 6 chr6 32260626 32260983 -117256054 - ORR1D2 LTR MaLR 0 370 1 3 831 576 0 0 0 chr6 32262228 32262292 -117254745 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 3 831 221 318 74 9 chr6 32263223 32263331 -117253706 - MIR SINE MIR -140 122 8 3 831 200 375 52 26 chr6 32263517 32263750 -117253287 - MIRc SINE MIR -3 265 27 3 831 533 259 152 19 chr6 32263762 32264018 -117253019 + CR1_Mam LINE CR1 1253 1542 -662 3 831 189 0 0 0 chr6 32264024 32264045 -117252992 + (A)n Simple_repeat Simple_repeat 1 21 0 3 831 414 0 0 0 chr6 32264930 32264976 -117252061 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 831 294 274 14 0 chr6 32265940 32266013 -117251024 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 831 321 89 0 0 chr6 32266649 32266694 -117250343 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 3 831 263 307 15 9 chr6 32267757 32267881 -117249156 + MIRb SINE MIR 63 190 -86 3 831 800 277 142 27 chr6 32267957 32268217 -117248820 + B4 SINE B4 1 290 -2 3 831 2232 174 80 0 chr6 32268869 32269259 -117247778 + MTC LTR MaLR 1 421 0 3 831 378 0 0 0 chr6 32270544 32270586 -117246451 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 831 189 227 0 0 chr6 32271762 32271806 -117245231 - MIRb SINE MIR -102 166 123 3 831 957 251 95 39 chr6 32271962 32272298 -117244739 - MT2B LTR ERVL 0 601 247 3 831 8046 48 0 6 chr6 32272298 32273255 -117243782 + L1_Mus2 LINE L1 5615 6565 -1 3 831 511 218 47 24 chr6 32273308 32273435 -117243602 - MT2B LTR ERVL -403 130 1 3 831 202 374 9 9 chr6 32273511 32273619 -117243418 + MIR SINE MIR 76 183 -79 3 831 22 56 0 0 chr6 32274279 32274315 -117242722 + AT_rich Low_complexity Low_complexity 1 36 0 3 831 351 0 0 0 chr6 32274392 32274431 -117242606 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 831 507 60 0 0 chr6 32274619 32274686 -117242351 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 831 226 330 86 46 chr6 32275931 32276128 -117240909 - Tigger5 DNA MER2_type -2162 244 40 3 831 213 306 14 0 chr6 32276861 32276933 -117240104 + (GACTG)n Simple_repeat Simple_repeat 2 74 0 3 831 192 267 0 0 chr6 32276935 32276995 -117240042 + (GGTTG)n Simple_repeat Simple_repeat 5 64 0 3 831 194 230 38 75 chr6 32278704 32278784 -117238253 - MER5A DNA MER1_type -106 83 7 3 831 26 0 0 0 chr6 32278887 32278913 -117238124 + GC_rich Low_complexity Low_complexity 1 26 0 3 831 276 301 51 42 chr6 32279543 32279661 -117237376 - MLT1C LTR MaLR -345 122 4 3 831 648 267 72 6 chr6 32281513 32281679 -117235358 + B3A SINE B2 1 177 -21 3 831 312 102 0 0 chr6 32281690 32281739 -117235298 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 3 831 1951 170 98 8 chr6 32283065 32283388 -117233649 - MTC LTR MaLR 0 421 73 3 831 207 0 0 0 chr6 32283388 32283411 -117233626 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 831 1951 170 98 8 chr6 32283411 32283473 -117233564 - MTC LTR MaLR -349 72 3 3 831 222 316 31 0 chr6 32284080 32284178 -117232859 + GA-rich Low_complexity Low_complexity 5 105 0 3 831 543 274 11 128 chr6 32285192 32285372 -117231665 + RSINE1 SINE B4 6 164 -1 3 831 593 294 45 68 chr6 32285541 32285963 -117231074 + MLT1C LTR MaLR 11 624 -3 3 831 752 301 89 2 chr6 32286148 32286514 -117230523 + MLT2B4 LTR ERVL 163 655 -63 3 831 501 227 28 51 chr6 32286617 32286769 -117230268 - MLT1C LTR MaLR -240 150 3 3 831 387 89 0 0 chr6 32286806 32286862 -117230175 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 831 287 312 56 61 chr6 32286862 32287060 -117229977 - RMER10A LTR ERVL -45 397 201 3 831 1734 168 119 0 chr6 32287204 32287531 -117229506 + ORR1B2 LTR MaLR 2 367 0 3 831 255 284 15 0 chr6 32287801 32287868 -117229169 + GA-rich Low_complexity Low_complexity 1 68 0 3 831 21 36 0 0 chr6 32288143 32288171 -117228866 + AT_rich Low_complexity Low_complexity 1 28 0 3 831 243 0 0 0 chr6 32289102 32289129 -117227908 + (A)n Simple_repeat Simple_repeat 1 27 0 3 831 295 405 48 0 chr6 32290000 32290126 -117226911 + MER5A DNA MER1_type 1 132 -57 3 831 252 0 0 0 chr6 32290950 32290978 -117226059 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 3 831 504 0 0 0 chr6 32290989 32291045 -117225992 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 831 408 259 158 183 chr6 32291075 32291359 -117225678 - B4 SINE B4 -13 279 3 3 831 432 0 0 0 chr6 32291539 32291587 -117225450 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 831 343 340 47 13 chr6 32291639 32291788 -117225249 - L2c LINE L2 -258 3129 2976 3 831 235 240 0 0 chr6 32293835 32293885 -117223152 - MER112 DNA MER1_type -185 76 27 3 831 306 0 0 0 chr6 32294194 32294228 -117222809 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 831 234 0 0 0 chr6 32294254 32294280 -117222757 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 831 730 308 45 55 chr6 32295616 32295905 -117221132 + B4A SINE B4 7 292 0 3 831 303 140 0 0 chr6 32295924 32295974 -117221063 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 831 389 299 82 130 chr6 32297113 32297444 -117219593 + MLT1A1 LTR MaLR 1 315 -44 3 831 258 367 94 12 chr6 32297800 32297971 -117219066 - ORR1E LTR MaLR -174 185 1 3 831 184 245 40 20 chr6 32299529 32299579 -117217458 + MIR SINE MIR 20 70 -138 3 831 202 286 0 157 chr6 32300038 32300146 -117216891 - L2c LINE L2 -3 3384 3294 3 831 849 268 132 18 chr6 32300476 32300843 -117216194 + RMER20B LTR ERVK 123 516 0 3 831 503 214 25 135 chr6 32301265 32301465 -117215572 - MER104 DNA Tc2 0 181 4 3 831 23 0 0 0 chr6 32301824 32301847 -117215190 + AT_rich Low_complexity Low_complexity 1 23 0 3 831 495 0 0 0 chr6 32301878 32301933 -117215104 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 831 435 233 105 92 chr6 32302062 32302257 -117214780 - MTEa LTR MaLR -5 374 153 3 831 490 323 85 26 chr6 32303154 32303494 -117213543 + L1MA4A LINE L1 5571 5930 -373 3 831 396 252 26 43 chr6 32303769 32303885 -117213152 - PB1D10 SINE Alu -3 114 1 3 831 206 265 0 24 chr6 32306165 32306238 -117210799 + MIRm SINE MIR 62 129 -139 3 831 307 176 167 56 chr6 32306674 32306764 -117210273 + HAL1-3A_ME LINE L1 1928 2027 -831 3 831 567 224 0 0 chr6 32306806 32306985 -117210052 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 831 262 286 177 14 chr6 32306998 32307218 -117209819 - RMER12 LTR ERVK -328 994 739 3 831 562 326 88 42 chr6 32308587 32308894 -117208143 + ORR1E LTR MaLR 32 352 -7 3 831 367 344 80 12 chr6 32309070 32309232 -117207805 + Charlie17a DNA MER1_type 1 173 -46 3 831 26 0 0 0 chr6 32309717 32309743 -117207294 + AT_rich Low_complexity Low_complexity 1 26 0 3 831 270 0 0 0 chr6 32310016 32310046 -117206991 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 831 433 338 20 0 chr6 32310169 32310367 -117206670 - L3b LINE CR1 -168 314 113 3 831 333 0 0 0 chr6 32310374 32310411 -117206626 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 831 719 300 62 0 chr6 32310789 32311029 -117206008 + L1MB8 LINE L1 5409 5663 -515 3 831 688 243 94 11 chr6 32311043 32311234 -117205803 + ID_B1 SINE B4 12 218 -6 3 831 282 287 84 60 chr6 32311126 32311293 -117205744 - YREP_Mm Unknown Unknown -1518 294 124 3 831 1151 264 41 46 chr6 32311300 32311690 -117205347 + L1MB8 LINE L1 5791 6178 0 3 831 419 255 9 52 chr6 32313046 32313162 -117203875 - ID_B1 SINE B4 -65 159 49 3 831 209 347 70 20 chr6 32313298 32313398 -117203639 + MIRc SINE MIR 119 223 -45 3 831 184 263 48 81 chr6 32315185 32315247 -117201790 + L3 LINE CR1 4109 4168 -321 4 831 198 0 0 0 chr6 32316403 32316425 -117200612 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 4 831 288 236 236 0 chr6 32316532 32316621 -117200416 - MLT1A1 LTR MaLR -278 130 21 4 831 754 181 22 0 chr6 32317670 32317808 -117199229 + URR1A DNA MER1_type 84 224 -2 4 831 288 77 0 0 chr6 32318627 32318666 -117198371 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 831 414 0 0 0 chr6 32319034 32319080 -117197957 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 831 791 274 26 79 chr6 32319124 32319389 -117197648 - B4 SINE B4 -16 276 26 4 831 1035 269 4 13 chr6 32322294 32322499 -117194538 + ID_B1 SINE B4 1 205 -19 4 831 2104 131 13 53 chr6 32322499 32322878 -117194159 + ORR1B2 LTR MaLR 3 366 -1 4 831 1035 269 4 13 chr6 32322878 32322898 -117194139 + ID_B1 SINE B4 206 224 0 4 831 1162 214 48 17 chr6 32323337 32323632 -117193405 - L1MB3 LINE L1 -228 5955 5652 4 831 21 0 0 0 chr6 32324434 32324455 -117192582 + AT_rich Low_complexity Low_complexity 1 21 0 4 831 1090 107 27 38 chr6 32325451 32325635 -117191402 + URR1A DNA MER1_type 45 226 0 4 831 1650 192 113 8 chr6 32326025 32326036 -117191001 + MTD LTR MaLR 5 17 -402 4 831 207 0 0 0 chr6 32326036 32326059 -117190978 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 831 1650 192 113 8 chr6 32326059 32326410 -117190627 + MTD LTR MaLR 18 405 -14 4 831 208 331 66 60 chr6 32326513 32326664 -117190373 - MIRm SINE MIR -61 215 64 4 831 1283 186 82 187 chr6 32329699 32330116 -117186921 + ORR1D1 LTR MaLR 2 374 0 4 831 796 310 22 51 chr6 32333103 32333378 -117183659 + Tigger5 DNA MER2_type 2137 2403 -3 4 831 1232 136 54 45 chr6 32333542 32333765 -117183272 - URR1A DNA MER1_type -1 225 1 4 831 492 269 55 7 chr6 32334048 32334194 -117182843 + RSINE1 SINE B4 3 155 -10 4 831 434 18 18 0 chr6 32335372 32335427 -117181610 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 831 345 230 0 13 chr6 32335790 32335865 -117181172 + ID4_ SINE ID 4 77 -6 4 831 254 250 0 16 chr6 32335889 32335950 -117181087 + ID_B1 SINE B4 164 223 -1 4 831 24 0 0 0 chr6 32335952 32335976 -117181061 + AT_rich Low_complexity Low_complexity 1 24 0 4 831 396 59 0 0 chr6 32336440 32336491 -117180546 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 4 831 595 218 36 0 chr6 32337292 32337402 -117179635 + PB1D7 SINE Alu 1 114 -6 4 831 601 244 37 0 chr6 32339083 32339218 -117177819 - B1F SINE Alu -9 140 1 4 831 237 282 155 19 chr6 32340024 32340237 -117176800 + RMER12 LTR ERVK 785 1026 -296 4 831 4797 231 67 14 chr6 32340237 32341231 -117175806 + Lx9 LINE L1 6375 7412 -232 4 831 854 44 0 17 chr6 32341231 32341347 -117175690 + (CATATA)n Simple_repeat Simple_repeat 5 118 0 4 831 4797 231 67 14 chr6 32341347 32341555 -117175482 + Lx9 LINE L1 7413 7641 -3 4 831 23 54 0 0 chr6 32341572 32341609 -117175428 + AT_rich Low_complexity Low_complexity 1 37 0 4 831 761 303 32 20 chr6 32343119 32343365 -117173672 - B4A SINE B4 -3 289 41 4 831 236 327 51 19 chr6 32343728 32343884 -117173153 - L1ME4a LINE L1 -4 6120 5960 4 831 371 264 184 20 chr6 32343898 32344045 -117172992 - L1ME4a LINE L1 -226 5898 5728 4 831 448 202 106 0 chr6 32344062 32344156 -117172881 - B1F1 SINE Alu -44 105 2 4 831 315 308 138 14 chr6 32344769 32344805 -117172232 - RSINE1 SINE B4 0 165 128 4 831 189 0 0 0 chr6 32344805 32344826 -117172211 + (CACG)n Simple_repeat Simple_repeat 4 24 0 4 831 315 308 138 14 chr6 32344826 32344934 -117172103 - RSINE1 SINE B4 -38 127 3 4 831 414 0 0 0 chr6 32345131 32345177 -117171860 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 831 507 237 26 0 chr6 32346753 32346867 -117170170 + PB1D10 SINE Alu 1 117 0 4 831 666 58 0 0 chr6 32346910 32346997 -117170040 + (ACTG)n Simple_repeat Simple_repeat 2 88 0 4 831 352 214 121 44 chr6 32347767 32347894 -117169143 - MER5C DNA MER1_type -4 309 175 4 831 316 245 111 10 chr6 32348026 32348125 -117168912 + MER5A1 DNA MER1_type 8 116 -50 4 831 877 263 28 125 chr6 32348293 32348614 -117168423 + B4 SINE B4 1 290 -2 4 831 218 119 0 45 chr6 32348642 32348686 -117168351 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 4 831 24 0 0 0 chr6 32352920 32352944 -117164093 + AT_rich Low_complexity Low_complexity 1 24 0 4 831 358 322 0 97 chr6 32353227 32353361 -117163676 + MIR SINE MIR 16 136 -72 4 831 192 284 85 64 chr6 32353380 32353474 -117163563 + MIRc SINE MIR 20 115 -153 4 831 186 43 0 0 chr6 32353956 32353979 -117163058 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 831 1407 257 37 108 chr6 32354432 32354838 -117162199 + MTE2a LTR MaLR 3 379 0 4 831 237 312 0 61 chr6 32354952 32355051 -117161986 + MamGypLTR2 LTR Gypsy 662 754 -435 4 831 1086 176 97 5 chr6 32355456 32355662 -117161375 + URR1B DNA MER1_type 1 225 0 4 831 619 232 158 11 chr6 32355932 32356115 -117160922 - ID_B1 SINE B4 -13 211 2 4 831 246 257 43 0 chr6 32357311 32357381 -117159656 + MIR SINE MIR 64 136 -126 4 831 663 48 0 0 chr6 32357514 32357597 -117159440 + (GGGA)n Simple_repeat Simple_repeat 3 85 0 4 831 221 286 78 16 chr6 32358656 32358720 -117158317 - L2c LINE L2 -192 3195 3128 4 831 276 231 0 15 chr6 32360108 32360174 -117156863 + L1MD1 LINE L1 6125 6189 -53 4 831 688 293 26 49 chr6 32360975 32361201 -117155836 + Tigger15a DNA TcMar 131 351 -364 4 831 264 30 0 0 chr6 32362568 32362601 -117154436 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 831 733 208 23 0 chr6 32363575 32363705 -117153332 - B1_Mur2 SINE Alu -14 135 3 4 831 724 89 10 0 chr6 32363829 32363930 -117153107 - B2_Mm2 SINE B2 -92 103 2 4 831 626 304 88 119 chr6 32363931 32364293 -117152744 - ORR1E LTR MaLR -1 358 8 4 831 305 53 0 0 chr6 32364308 32364346 -117152691 - HAL1-3A_ME LINE L1 -846 2012 1975 4 831 475 249 0 22 chr6 32364361 32364542 -117152495 + (TATG)n Simple_repeat Simple_repeat 3 179 0 4 831 1119 196 4 18 chr6 32365118 32365346 -117151691 - URR1A DNA MER1_type 0 226 2 4 831 270 271 105 43 chr6 32365443 32365605 -117151432 - MER112 DNA MER1_type -86 175 4 4 831 21 0 0 0 chr6 32365715 32365736 -117151301 + AT_rich Low_complexity Low_complexity 1 21 0 4 831 348 148 0 0 chr6 32366954 32367015 -117150022 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 831 648 317 43 60 chr6 32367411 32367780 -117149257 + L1ME4a LINE L1 5497 5859 -265 4 831 803 291 50 14 chr6 32367881 32368163 -117148874 + B4A SINE B4 1 292 0 4 831 208 49 0 68 chr6 32368316 32368360 -117148677 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 4 831 507 126 0 0 chr6 32368969 32369064 -117147973 + (TG)n Simple_repeat Simple_repeat 1 95 0 4 831 584 119 0 9 chr6 32369064 32369174 -117147863 + (GA)n Simple_repeat Simple_repeat 2 110 0 4 831 323 342 108 41 chr6 32369423 32369618 -117147419 - MamRep38 DNA hAT -42 253 46 4 831 423 0 0 0 chr6 32371096 32371143 -117145894 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 831 200 250 110 14 chr6 32371864 32371937 -117145100 - MIRm SINE MIR -29 247 168 4 831 281 242 97 0 chr6 32372735 32372797 -117144240 + MLT1A1 LTR MaLR 54 121 -287 4 831 417 115 0 0 chr6 32374374 32374452 -117142585 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 103 322 370 10 43 chr6 32374757 32374966 -117142071 - MIRb SINE MIR -39 229 28 4 832 455 305 60 0 chr6 32375023 32375174 -117141863 - MER3 DNA MER1_type -1 208 49 4 832 200 205 0 0 chr6 32375301 32375340 -117141697 + GA-rich Low_complexity Low_complexity 1 39 0 4 832 204 158 0 0 chr6 32375840 32375878 -117141159 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 4 832 871 249 57 5 chr6 32376109 32376261 -117140776 + B3 SINE B2 12 163 -53 4 832 384 22 0 0 chr6 32376261 32376306 -117140731 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 832 871 249 57 5 chr6 32376306 32376347 -117140690 + B3 SINE B2 164 215 -1 4 832 849 97 0 0 chr6 32376994 32377128 -117139909 + (TG)n Simple_repeat Simple_repeat 1 134 0 4 832 225 0 0 0 chr6 32377128 32377152 -117139885 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 832 288 336 52 0 chr6 32378931 32379047 -117137990 - MER58B DNA MER1_type 0 341 220 4 832 284 305 127 0 chr6 32379081 32379199 -117137838 - MER58B DNA MER1_type -196 145 13 4 832 583 325 36 72 chr6 32379557 32379931 -117137106 - ORR1E LTR MaLR 0 379 3 4 832 569 218 34 9 chr6 32380080 32380200 -117136837 + ORR1E LTR MaLR 9 119 -255 4 832 592 268 86 17 chr6 32380236 32380468 -117136569 - L1MB3 LINE L1 -23 6160 5913 4 832 915 142 19 0 chr6 32380820 32380975 -117136062 + URR1A DNA MER1_type 65 222 -4 4 832 399 89 0 0 chr6 32381241 32381297 -117135740 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 832 310 339 26 9 chr6 32381789 32381902 -117135135 - MIR SINE MIR -135 127 13 4 832 477 176 0 0 chr6 32384560 32384702 -117132335 + (CTG)n Simple_repeat Simple_repeat 1 142 0 4 832 891 129 0 0 chr6 32384702 32384880 -117132157 + (TCC)n Simple_repeat Simple_repeat 1 178 0 4 832 1809 70 31 0 chr6 32385669 32385926 -117131111 + L1_Mus3 LINE L1 6374 6638 0 4 832 270 160 0 0 chr6 32387609 32387659 -117129378 + A-rich Low_complexity Low_complexity 1 50 0 4 832 772 226 101 45 chr6 32388169 32388368 -117128669 + ID_B1 SINE B4 10 219 -5 4 832 270 180 115 0 chr6 32388337 32388398 -117128639 - MER58B DNA MER1_type -127 214 147 4 832 225 0 0 0 chr6 32388410 32388435 -117128602 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 4 832 706 335 19 69 chr6 32390561 32390923 -117126114 - ORR1E LTR MaLR -6 353 10 4 832 449 129 0 289 chr6 32391695 32391892 -117125145 - L1Md_F2 LINE L1 0 6582 6443 4 832 373 235 24 12 chr6 32392330 32392412 -117124625 - ID4 SINE ID 0 83 1 4 832 324 0 0 0 chr6 32396380 32396416 -117120621 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 832 419 303 0 2 chr6 32397920 32398029 -117119008 - PB1D7 SINE Alu -12 108 1 5 832 607 176 40 52 chr6 32398041 32398215 -117118822 + L1MA6 LINE L1 6128 6299 -1 5 832 1163 62 0 7 chr6 32398274 32398421 -117118616 - B1_Mus2 SINE Alu 0 147 2 5 832 402 21 0 0 chr6 32399508 32399555 -117117482 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 832 599 133 9 0 chr6 32402149 32402254 -117114783 + (TCC)n Simple_repeat Simple_repeat 3 108 0 5 832 1458 136 0 9 chr6 32402585 32402808 -117114229 - URR1B DNA MER1_type 0 225 5 5 832 492 319 57 101 chr6 32403114 32403480 -117113557 - ORR1D1 LTR MaLR -4 370 21 5 832 322 289 0 13 chr6 32404646 32404723 -117112314 + ID2 SINE ID 2 77 -6 5 832 183 322 81 0 chr6 32408896 32408983 -117108054 - MIR SINE MIR -70 138 45 5 832 414 0 0 0 chr6 32409988 32410034 -117107003 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 832 323 229 123 9 chr6 32411993 32412099 -117104938 + MER5A1 DNA MER1_type 18 135 -31 5 832 1216 271 76 14 chr6 32413014 32413369 -117103668 + MLT1B LTR MaLR 12 388 -2 5 832 384 296 5 43 chr6 32413836 32413939 -117103098 + (CATATA)n Simple_repeat Simple_repeat 1 101 0 5 832 405 0 0 0 chr6 32413939 32413984 -117103053 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 832 384 296 5 43 chr6 32413984 32414067 -117102970 + (CATATA)n Simple_repeat Simple_repeat 6 83 0 5 832 291 212 0 91 chr6 32414978 32415066 -117101971 - MTEb LTR MaLR -2 377 298 5 832 879 239 31 22 chr6 32415045 32415268 -117101769 + MTEa-int LTR MaLR 1352 1576 -4 5 832 1132 272 82 46 chr6 32415272 32415438 -117101599 + MTEa LTR MaLR 1 171 -208 5 832 207 0 0 0 chr6 32415438 32415461 -117101576 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 832 1132 272 82 46 chr6 32415461 32415660 -117101377 + MTEa LTR MaLR 172 379 0 5 832 267 173 0 37 chr6 32415878 32415932 -117101105 + B4A SINE B4 179 230 -62 5 832 351 0 0 0 chr6 32415992 32416031 -117101006 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 832 463 287 35 14 chr6 32416253 32416398 -117100639 - ORR1E LTR MaLR -4 375 228 5 832 664 294 32 73 chr6 32416384 32416671 -117100366 - ORR1E LTR MaLR -98 272 6 5 832 417 39 0 0 chr6 32418886 32418937 -117098100 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 832 453 245 104 0 chr6 32419546 32419652 -117097385 + B1F SINE Alu 5 121 -28 5 832 249 33 0 0 chr6 32419652 32419682 -117097355 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 832 424 291 168 31 chr6 32419865 32420156 -117096881 + HAL1b LINE L1 1000 1330 -679 5 832 21 36 0 0 chr6 32420828 32420856 -117096181 + AT_rich Low_complexity Low_complexity 1 28 0 5 832 225 0 0 0 chr6 32421093 32421118 -117095919 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 5 832 285 245 142 38 chr6 32421465 32421571 -117095466 - MIRb SINE MIR -118 150 34 5 832 286 266 25 25 chr6 32421706 32421787 -117095250 + ID4_ SINE ID 1 81 -2 5 832 195 129 0 0 chr6 32422048 32422079 -117094958 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 5 832 426 332 58 34 chr6 32424043 32424249 -117092788 + MIR SINE MIR 47 257 -5 5 832 1032 306 79 25 chr6 32427616 32428095 -117088942 + MLT1D LTR MaLR 1 505 0 5 832 198 0 0 0 chr6 32430991 32431013 -117086024 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 832 451 302 163 27 chr6 32431269 32431490 -117085547 + B4 SINE B4 1 251 -41 5 832 408 111 0 0 chr6 32431503 32431566 -117085471 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 832 288 320 40 0 chr6 32431924 32432024 -117085013 - PB1D10 SINE Alu -13 104 1 5 832 424 281 23 15 chr6 32432024 32432066 -117084971 - ID SINE ID -142 82 40 5 832 441 0 0 0 chr6 32432091 32432140 -117084897 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 5 832 348 77 0 0 chr6 32432248 32432300 -117084737 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 832 489 292 22 14 chr6 32434150 32434289 -117082748 + MLT1I LTR MaLR 272 411 0 5 832 21 0 0 0 chr6 32434500 32434521 -117082516 + AT_rich Low_complexity Low_complexity 1 21 0 5 832 385 244 0 13 chr6 32435069 32435148 -117081889 + ID4_ SINE ID 2 79 -4 5 832 263 226 30 0 chr6 32435594 32435727 -117081310 + (CA)n Simple_repeat Simple_repeat 2 138 0 5 832 964 258 61 5 chr6 32436509 32436743 -117080294 + ID_B1 SINE B4 6 248 -44 5 832 747 322 173 68 chr6 32438640 32438800 -117078237 + MLT1F2 LTR MaLR 1 179 -381 5 832 689 0 12 0 chr6 32438800 32438881 -117078156 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 832 747 322 173 68 chr6 32438881 32439216 -117077821 + MLT1F2 LTR MaLR 180 548 -12 5 832 3022 39 0 0 chr6 32439298 32439653 -117077384 + L1_Mus1 LINE L1 6209 6563 -4 5 832 183 129 0 0 chr6 32441387 32441418 -117075619 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 832 631 267 6 12 chr6 32441421 32441584 -117075453 - RSINE1 SINE B4 -2 163 2 5 832 438 20 0 0 chr6 32441696 32441747 -117075290 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 832 267 157 0 0 chr6 32441747 32441798 -117075239 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 832 881 268 87 73 chr6 32442249 32442607 -117074430 + MTEa LTR MaLR 5 367 -12 5 832 516 16 0 0 chr6 32443111 32443172 -117073865 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 832 255 323 0 31 chr6 32444715 32444811 -117072226 - MTEb LTR MaLR -15 364 272 5 832 185 182 0 57 chr6 32446442 32446477 -117070560 - L4 LINE RTE -1904 125 93 5 832 188 133 67 0 chr6 32448094 32448124 -117068913 - L2c LINE L2 -56 3331 3300 5 832 13090 78 4 11 chr6 32449805 32452333 -117064704 + L1_Mus1 LINE L1 4061 6567 0 5 832 474 101 0 0 chr6 32452850 32452919 -117064118 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 832 408 235 114 65 chr6 32452957 32453080 -117063957 - B4A SINE B4 -15 277 149 5 832 210 208 0 0 chr6 32453383 32453431 -117063606 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 5 832 29 70 0 0 chr6 32453830 32453887 -117063150 + AT_rich Low_complexity Low_complexity 1 57 0 5 832 249 336 107 25 chr6 32454127 32454249 -117062788 + MIR SINE MIR 79 210 -52 5 832 1458 134 4 22 chr6 32455283 32455511 -117061526 + URR1B DNA MER1_type 2 225 0 5 832 482 240 7 98 chr6 32455781 32455924 -117061113 + MamSINE1 SINE tRNA 15 144 -146 5 832 330 138 0 0 chr6 32456616 32456674 -117060363 + (TTG)n Simple_repeat Simple_repeat 3 60 0 5 832 495 0 0 0 chr6 32457250 32457305 -117059732 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 832 270 0 0 0 chr6 32457305 32457334 -117059703 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 832 288 0 0 0 chr6 32457777 32457809 -117059228 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 832 260 27 0 26 chr6 32461999 32462037 -117055000 + (GGTTG)n Simple_repeat Simple_repeat 2 38 0 5 832 216 241 0 53 chr6 32462672 32462729 -117054308 + L3 LINE CR1 4216 4269 -220 5 832 1475 199 179 0 chr6 32463526 32463873 -117053164 + MTD LTR MaLR 11 419 0 5 832 459 323 79 30 chr6 32464867 32465132 -117051905 + B4A SINE B4 2 279 -13 5 832 756 203 7 13 chr6 32465246 32465396 -117051641 - B1_Mur3 SINE Alu 0 149 1 5 832 243 0 0 0 chr6 32465679 32465706 -117051331 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 832 468 0 0 0 chr6 32465706 32465757 -117051280 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 832 690 143 137 29 chr6 32465824 32466002 -117051035 + MTD LTR MaLR 224 417 -2 5 832 195 139 0 0 chr6 32467954 32467990 -117049047 + (ATGGTG)n Simple_repeat Simple_repeat 1 36 0 5 832 216 97 0 0 chr6 32468989 32469020 -117048017 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 832 351 0 0 0 chr6 32470025 32470064 -117046973 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 5 832 705 67 0 0 chr6 32470664 32470768 -117046269 + (TC)n Simple_repeat Simple_repeat 1 104 0 5 832 191 279 0 105 chr6 32471560 32471636 -117045401 - MIRc SINE MIR -31 237 170 5 832 1727 217 71 18 chr6 32471901 32472282 -117044755 - MTD LTR MaLR -14 405 5 5 832 213 340 120 51 chr6 32472549 32472707 -117044330 + L2b LINE L2 3146 3314 -73 5 832 309 339 53 38 chr6 32472711 32472843 -117044194 + RSINE1 SINE B4 25 158 -7 5 832 236 341 11 23 chr6 32472887 32472974 -117044063 + L2b LINE L2 3289 3374 -1 5 832 562 302 110 86 chr6 32473926 32474278 -117042759 + MLT1A LTR MaLR 3 374 0 5 832 183 139 0 0 chr6 32474644 32474680 -117042357 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 5 832 376 227 0 16 chr6 32475486 32475607 -117041430 + CT-rich Low_complexity Low_complexity 3 121 0 5 832 243 61 0 0 chr6 32477177 32477210 -117039827 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 5 832 264 30 0 0 chr6 32477379 32477412 -117039625 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 832 26 0 0 0 chr6 32478050 32478076 -117038961 + AT_rich Low_complexity Low_complexity 1 26 0 5 832 1630 179 205 3 chr6 32479570 32479917 -117037120 - MTD LTR MaLR 0 419 3 5 832 418 250 0 0 chr6 32480345 32480417 -117036620 + ID4_ SINE ID 6 77 -6 5 832 415 245 53 11 chr6 32480417 32480440 -117036597 + ID_B1 SINE B4 6 104 -120 5 832 32 26 0 0 chr6 32480685 32480724 -117036313 + AT_rich Low_complexity Low_complexity 1 39 0 5 832 225 296 39 84 chr6 32481039 32481194 -117035843 - L2 LINE L2 -821 2598 2451 5 832 28 29 0 0 chr6 32481646 32481681 -117035356 + AT_rich Low_complexity Low_complexity 1 35 0 5 832 483 292 158 7 chr6 32481869 32482148 -117034889 - L1MB3 LINE L1 -15 6168 5848 5 832 324 296 0 0 chr6 32483632 32483713 -117033324 - MIRb SINE MIR -100 168 88 5 832 246 221 43 96 chr6 32484119 32484234 -117032803 + MamRep605 Unknown Unknown 62 170 -706 5 832 357 138 0 0 chr6 32484416 32484496 -117032541 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 832 1165 274 65 0 chr6 32485492 32485784 -117031253 - MER2 DNA MER2_type -19 326 16 6 832 291 336 31 39 chr6 32485933 32486063 -117030974 - MER5B DNA MER1_type -40 138 10 6 832 578 278 21 1 chr6 32486421 32486652 -117030385 + L1M4 LINE L1 5200 5433 -747 6 832 233 243 28 28 chr6 32486703 32486775 -117030262 - MER5A DNA MER1_type -117 72 1 6 832 576 354 87 49 chr6 32489676 32490226 -117026811 + Charlie7 DNA MER1_type 83 653 -1959 6 832 250 254 194 42 chr6 32490975 32491119 -117025918 + MIR SINE MIR 71 236 -26 6 832 360 265 114 49 chr6 32491887 32492010 -117025027 + B4 SINE B4 113 243 -49 6 832 405 239 0 0 chr6 32492044 32492115 -117024922 - ID SINE ID -144 80 10 6 832 306 279 0 14 chr6 32492054 32492123 -117024914 - BC1_Mm scRNA scRNA -83 69 2 6 832 306 0 0 0 chr6 32492565 32492599 -117024438 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 832 566 243 201 34 chr6 32492698 32492932 -117024105 - B4 SINE B4 -18 274 2 6 832 279 0 0 0 chr6 32493826 32493857 -117023180 + (A)n Simple_repeat Simple_repeat 1 31 0 6 832 205 347 83 25 chr6 32493909 32494030 -117023007 + MIRm SINE MIR 20 147 -129 6 832 228 308 76 8 chr6 32494472 32494603 -117022434 + Lx9 LINE L1 7486 7625 -19 6 832 932 221 175 7 chr6 32494652 32494935 -117022102 - MTD LTR MaLR -44 375 1 6 832 340 318 112 0 chr6 32495342 32495512 -117021525 + MER5A DNA MER1_type 1 189 0 6 832 2220 136 67 8 chr6 32495556 32495928 -117021109 + ORR1B1 LTR MaLR 1 394 0 6 832 2029 183 60 9 chr6 32496194 32496614 -117020423 + BGLII_B LTR ERVK 1 441 0 6 832 520 254 0 56 chr6 32496648 32496773 -117020264 - PB1D7 SINE Alu 0 120 3 6 832 743 231 50 23 chr6 32498390 32498611 -117018426 - RCHARR1 DNA MER1_type 0 974 748 6 832 1205 264 70 3 chr6 32498608 32498924 -117018113 - RCHARR1 DNA MER1_type -505 469 133 6 832 1265 199 212 4 chr6 32498930 32499208 -117017829 + ORR1B2 LTR MaLR 32 367 0 6 832 303 244 0 82 chr6 32499209 32499294 -117017743 - RCHARR1 DNA MER1_type -838 136 59 6 832 2307 175 0 8 chr6 32499412 32499787 -117017250 + MTC LTR MaLR 50 421 0 6 832 313 280 80 60 chr6 32499787 32499988 -117017049 - L1MEg LINE L1 -4944 1140 936 6 832 1654 243 58 20 chr6 32500541 32501045 -117015992 + Ricksha_c DNA MuDR 1396 1918 -130 1 832 1077 254 14 0 chr6 32501046 32501325 -117015712 + Lx9 LINE L1 7223 7505 -139 2 832 379 272 25 0 chr6 32501348 32501429 -117015608 + B3 SINE B2 134 216 0 3 832 1156 196 64 0 chr6 32501463 32501682 -117015355 + Lx6 LINE L1 6508 6740 -720 4 832 188 320 77 39 chr6 32503034 32503112 -117013925 + L2a LINE L2 3304 3384 -42 5 832 948 264 33 41 chr6 32505010 32505387 -117011650 - RLTR12B LTR ERVK -183 344 7 6 832 184 329 79 0 chr6 32505540 32505616 -117011421 - L4 LINE RTE -1473 556 475 7 833 299 208 10 77 chr6 32506483 32506587 -117010450 - Lx9 LINE L1 -4 7640 7544 8 833 198 0 0 0 chr6 32506590 32506612 -117010425 + (TTG)n Simple_repeat Simple_repeat 2 23 0 9 833 225 0 0 0 chr6 32506633 32506658 -117010379 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 833 190 262 31 47 chr6 32506699 32506763 -117010274 - MER5A DNA MER1_type -79 110 48 1 833 1386 252 57 27 chr6 32507358 32507765 -117009272 - MTD LTR MaLR 0 419 1 1 833 252 143 0 0 chr6 32508637 32508679 -117008358 + (CTTA)n Simple_repeat Simple_repeat 2 43 0 1 833 571 301 39 0 chr6 32509491 32509647 -117007390 + RSINE1 SINE B4 2 163 -2 1 833 330 26 0 0 chr6 32510471 32510510 -117006527 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 833 2357 122 77 37 chr6 32510820 32511221 -117005816 + MTC LTR MaLR 5 421 0 1 833 229 250 0 0 chr6 32511565 32511613 -117005424 + Tigger7 DNA MER2_type 237 284 -2207 1 833 895 72 0 86 chr6 32511613 32511810 -117005227 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 833 180 0 0 0 chr6 32511810 32511829 -117005208 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 833 252 254 0 33 chr6 32511840 32511901 -117005136 + Tigger7 DNA MER2_type 2433 2491 0 1 833 476 270 26 0 chr6 32511903 32512018 -117005019 + MLT1J2 LTR MaLR 210 327 -121 2 833 1625 294 42 4 chr6 32514195 32514646 -117002391 + RCHARR1 DNA MER1_type 3 470 -504 2 833 352 184 23 0 chr6 32514655 32514742 -117002295 + Lx9 LINE L1 7556 7644 0 2 833 773 231 71 31 chr6 32514792 32514992 -117002045 + B3 SINE B2 14 216 0 2 833 2077 237 23 41 chr6 32514990 32515505 -117001532 + RCHARR1 DNA MER1_type 469 974 0 2 833 360 183 0 40 chr6 32515804 32515878 -117001159 + PB1D7 SINE Alu 48 118 -2 2 833 375 23 0 0 chr6 32516317 32516361 -117000676 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 833 522 0 0 0 chr6 32516362 32516420 -117000617 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 833 1120 284 36 31 chr6 32517661 32518017 -116999020 - Tigger7 DNA MER2_type 0 2491 2134 2 833 553 329 100 8 chr6 32518027 32518266 -116998771 - Tigger7 DNA MER2_type -2192 299 39 2 833 375 23 0 0 chr6 32518338 32518382 -116998655 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 833 365 264 212 6 chr6 32518398 32518558 -116998479 + LTR82B Low_complexity ERVL 157 349 -481 2 833 1366 163 0 26 chr6 32518671 32518898 -116998139 + URR1B DNA MER1_type 5 225 0 3 833 378 0 0 0 chr6 32519080 32519122 -116997915 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 833 531 288 10 66 chr6 32519437 32519634 -116997403 + L3 LINE CR1 3461 3646 -843 3 833 22 0 0 0 chr6 32519739 32519761 -116997276 + AT_rich Low_complexity Low_complexity 1 22 0 3 833 241 174 0 28 chr6 32519783 32519854 -116997183 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 833 636 50 0 0 chr6 32520324 32520404 -116996633 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 833 360 59 0 0 chr6 32520410 32520461 -116996576 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 833 184 306 68 27 chr6 32520476 32520550 -116996487 - L4 LINE RTE -208 1821 1745 3 833 232 266 37 37 chr6 32520795 32520877 -116996160 + B4A SINE B4 86 167 -125 3 833 490 206 0 47 chr6 32520809 32520916 -116996121 + PB1D10 SINE Alu 16 117 0 3 833 519 17 0 0 chr6 32520996 32521056 -116995981 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 833 23 0 0 0 chr6 32521246 32521269 -116995768 + AT_rich Low_complexity Low_complexity 1 23 0 4 833 1351 173 59 45 chr6 32523325 32523615 -116993422 - MTC LTR MaLR -50 371 78 4 833 351 0 0 0 chr6 32523618 32523657 -116993380 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 833 277 220 0 0 chr6 32525351 32525401 -116991636 + L2a LINE L2 3374 3423 -3 4 833 222 37 0 0 chr6 32526433 32526460 -116990577 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 833 1231 302 74 13 chr6 32526933 32527393 -116989644 - RMER5 LTR ERV1 0 534 47 4 833 282 132 0 0 chr6 32528172 32528225 -116988812 + (CAT)n Simple_repeat Simple_repeat 3 55 0 4 833 1263 249 56 44 chr6 32528806 32529146 -116987891 - MER2 DNA MER2_type -1 344 1 4 833 30 0 0 0 chr6 32529465 32529495 -116987542 + AT_rich Low_complexity Low_complexity 1 30 0 4 833 25 0 0 0 chr6 32530388 32530413 -116986624 + AT_rich Low_complexity Low_complexity 1 25 0 5 833 1148 243 20 57 chr6 32530796 32531097 -116985940 + B4A SINE B4 3 292 0 5 833 235 325 12 0 chr6 32531098 32531181 -116985856 + (CATA)n Simple_repeat Simple_repeat 4 87 0 5 833 348 164 0 0 chr6 32532368 32532435 -116984602 + CT-rich Low_complexity Low_complexity 3 69 0 5 833 470 358 12 0 chr6 32533173 32533346 -116983691 + MIR SINE MIR 38 212 -50 5 833 270 0 0 0 chr6 32536041 32536071 -116980966 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 833 523 133 9 9 chr6 32537099 32537205 -116979832 + (TG)n Simple_repeat Simple_repeat 2 107 0 5 833 301 136 0 29 chr6 32538257 32538325 -116978712 + CT-rich Low_complexity Low_complexity 1 66 0 5 833 312 27 0 0 chr6 32538338 32538375 -116978662 + (CCG)n Simple_repeat Simple_repeat 3 39 0 5 833 23 0 0 0 chr6 32539074 32539097 -116977940 + AT_rich Low_complexity Low_complexity 1 23 0 5 833 375 23 0 0 chr6 32540218 32540262 -116976775 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 833 366 305 83 38 chr6 32543519 32543652 -116973385 + B1F1 SINE Alu 1 139 -10 6 833 388 293 35 0 chr6 32544051 32544167 -116972870 + MER63C DNA AcHobo 274 393 -537 6 833 311 269 90 27 chr6 32544268 32544379 -116972658 - MLT1A LTR MaLR 0 408 291 6 833 1737 206 45 20 chr6 32544943 32545295 -116971742 - ORR1D2 LTR MaLR -9 361 1 6 833 476 32 16 0 chr6 32546127 32546189 -116970848 + (TAA)n Simple_repeat Simple_repeat 2 64 0 6 833 504 326 56 111 chr6 32546427 32546666 -116970371 - MLT1A LTR MaLR -35 339 116 6 833 588 29 0 0 chr6 32546666 32546736 -116970301 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 833 504 326 56 111 chr6 32546736 32546855 -116970182 - MLT1A LTR MaLR -259 115 1 6 833 1012 231 14 0 chr6 32546938 32547150 -116969887 + B3 SINE B2 2 216 0 6 833 231 351 187 4 chr6 32547261 32547507 -116969530 + L3 LINE CR1 3318 3608 -881 6 833 2126 130 9 24 chr6 32547816 32547940 -116969097 - ORR1A3 LTR MaLR 0 326 210 6 833 2846 22 0 3 chr6 32547940 32548263 -116968774 - RLTRETN_Mm LTR ERVK 0 322 1 7 833 2126 130 9 24 chr6 32548263 32548469 -116968568 - ORR1A3 LTR MaLR -117 209 1 6 833 566 338 194 33 chr6 32548720 32549378 -116967659 + L3 LINE CR1 3715 4478 -11 6 833 877 291 68 35 chr6 32549751 32550118 -116966919 + MTE2a LTR MaLR 1 379 0 7 833 252 289 24 12 chr6 32550803 32550887 -116966150 + GA-rich Low_complexity Low_complexity 2 86 0 7 833 180 320 120 30 chr6 32551553 32551653 -116965384 - L2b LINE L2 -27 3399 3291 7 833 186 278 155 58 chr6 32551761 32551864 -116965173 - L2b LINE L2 -239 3136 3024 7 833 1232 293 20 112 chr6 32552121 32552524 -116964513 - MTEa LTR MaLR -13 366 1 7 833 4297 288 51 38 chr6 32552526 32553958 -116963079 - MTEa-int LTR MaLR -2 1578 1 7 833 789 263 211 28 chr6 32553958 32554275 -116962762 - MTEa LTR MaLR 0 379 5 7 833 431 311 85 92 chr6 32554351 32554820 -116962217 - MLT1J LTR MaLR 0 512 10 7 833 596 252 102 34 chr6 32555099 32555304 -116961733 + Charlie7a DNA MER1_type 10 228 -44 7 833 499 286 104 43 chr6 32557952 32558299 -116958738 + MLT1B LTR MaLR 20 387 -3 7 833 7923 78 2 6 chr6 32558520 32560095 -116956942 + L1_Mus1 LINE L1 4999 6567 0 7 833 29 47 0 0 chr6 32561038 32561081 -116955956 + AT_rich Low_complexity Low_complexity 1 43 0 7 833 573 15 0 0 chr6 32561279 32561345 -116955692 + (TGGA)n Simple_repeat Simple_repeat 3 68 0 8 833 554 75 0 12 chr6 32561353 32561434 -116955603 + (GGGA)n Simple_repeat Simple_repeat 1 80 0 8 833 500 222 119 0 chr6 32562353 32562479 -116954558 - B1F SINE Alu 0 149 9 8 833 200 143 24 0 chr6 32563960 32564087 -116952950 + (TCTA)n Simple_repeat Simple_repeat 1 130 0 8 833 352 328 63 57 chr6 32564088 32564437 -116952600 - L1ME5 LINE L1 -120 6074 5724 8 833 234 196 68 51 chr6 32564478 32564537 -116952500 - L1M5 LINE L1 -598 5596 5537 8 833 338 318 8 8 chr6 32565122 32565249 -116951788 - L1M5 LINE L1 -810 5384 5258 8 833 21 57 0 0 chr6 32565650 32565685 -116951352 + AT_rich Low_complexity Low_complexity 1 35 0 8 833 674 280 92 24 chr6 32566158 32566538 -116950499 - L1M5 LINE L1 -1955 4191 3786 8 833 7751 52 1 1 chr6 32566623 32567554 -116949483 + L1_Mus1 LINE L1 5637 6567 0 8 833 25 51 0 0 chr6 32567558 32567597 -116949440 + AT_rich Low_complexity Low_complexity 1 39 0 8 833 260 264 79 30 chr6 32567838 32568002 -116949035 - L1MD LINE L1 -2868 3278 3107 8 833 2177 203 64 19 chr6 32568337 32568820 -116948217 - RLTR16 LTR ERVK 0 505 1 9 833 3234 48 5 5 chr6 32569949 32570345 -116946692 - MTA_Mm LTR MaLR 0 396 1 9 833 225 0 0 0 chr6 32570647 32570672 -116946365 + (CAA)n Simple_repeat Simple_repeat 2 26 0 9 833 403 211 0 13 chr6 32570767 32570844 -116946193 + ID4 SINE ID 4 79 -4 9 833 22 0 0 0 chr6 32570850 32570872 -116946165 + AT_rich Low_complexity Low_complexity 1 22 0 9 833 605 277 18 48 chr6 32570877 32571044 -116945993 + RSINE1 SINE B4 4 165 0 9 833 468 77 0 0 chr6 32571062 32571127 -116945910 + (CA)n Simple_repeat Simple_repeat 1 65 0 9 833 240 122 0 0 chr6 32571188 32571229 -116945808 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 9 833 859 272 74 4 chr6 32572248 32572517 -116944520 - B4A SINE B4 -4 288 1 9 833 261 333 104 61 chr6 32572640 32572966 -116944071 + ORR1E LTR MaLR 3 342 -17 9 833 477 342 27 22 chr6 32573970 32574194 -116942843 - MIR SINE MIR -31 231 7 1 833 791 219 52 26 chr6 32574265 32574457 -116942580 + B3A SINE B2 2 198 0 1 833 229 167 18 36 chr6 32574813 32574869 -116942168 + MTE2a LTR MaLR 281 335 -44 1 833 32921 76 3 4 chr6 32574915 32580196 -116936841 + L1Md_F2 LINE L1 312 5586 -297 1 833 8479 34 3 3 chr6 32580196 32581191 -116935846 + L1Md_F2 LINE L1 5587 6581 -1 1 833 887 298 76 22 chr6 32581275 32581684 -116935353 + MLT1C LTR MaLR 37 467 0 1 833 185 295 148 26 chr6 32582076 32582191 -116934846 + L2a LINE L2 3273 3401 -25 1 833 304 326 44 22 chr6 32582594 32582729 -116934308 - Tigger9b DNA MER2_type 0 624 487 1 833 639 268 0 0 chr6 32582809 32582947 -116934090 - ID_B1 SINE B4 -7 217 80 1 833 346 281 0 68 chr6 32582993 32583096 -116933941 + RSINE1 SINE B4 53 148 -17 1 833 255 312 56 42 chr6 32583102 32583246 -116933791 - Tigger9b DNA MER2_type -156 468 323 1 833 862 333 24 0 chr6 32583570 32583861 -116933176 - Tigger9b DNA MER2_type -317 307 10 1 833 374 292 128 50 chr6 32584099 32584279 -116932758 + B3A SINE B2 5 198 0 1 833 300 53 0 0 chr6 32585158 32585196 -116931841 + (CAT)n Simple_repeat Simple_repeat 1 38 0 1 833 181 260 156 0 chr6 32585393 32585470 -116931567 - L2c LINE L2 -44 3343 3255 1 833 2795 164 53 22 chr6 32585795 32586345 -116930692 - RLTR12A LTR ERVK 0 568 2 1 833 521 305 87 51 chr6 32586362 32586697 -116930340 - ORR1E LTR MaLR -4 355 9 1 833 218 309 47 30 chr6 32587449 32587607 -116929430 - MIR SINE MIR -103 165 4 1 833 374 228 113 8 chr6 32589515 32589639 -116927398 + B1F SINE Alu 3 139 -10 1 833 1156 34 7 7 chr6 32589639 32589789 -116927248 + (TAGA)n Simple_repeat Simple_repeat 4 153 0 1 833 238 269 116 21 chr6 32589902 32589997 -116927040 - MLT1J LTR MaLR -81 431 328 1 833 234 329 107 0 chr6 32590117 32590266 -116926771 - MLT1J LTR MaLR -339 173 9 1 833 225 200 167 0 chr6 32590763 32590823 -116926214 - PB1D7 SINE Alu -9 111 42 1 833 342 238 62 46 chr6 32591406 32591600 -116925437 - Charlie7a DNA MER1_type 0 272 76 1 833 464 322 43 15 chr6 32592718 32592951 -116924086 - MLT1J LTR MaLR -231 281 1 1 833 656 222 129 5 chr6 32593219 32593436 -116923601 + Tigger7 DNA MER2_type 2240 2483 -8 1 833 447 19 0 0 chr6 32594542 32594594 -116922443 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 833 371 365 29 0 chr6 32594765 32594902 -116922135 + ID_B1 SINE B4 70 210 -14 1 833 243 238 48 0 chr6 32594902 32594965 -116922072 + GA-rich Low_complexity Low_complexity 3 68 0 1 833 318 361 70 9 chr6 32596821 32597036 -116920001 - MIRc SINE MIR -30 238 11 1 833 2685 174 72 16 chr6 32598251 32598818 -116918219 + L1_Mur3 LINE L1 1317 1915 -3965 1 833 348 314 139 46 chr6 32598920 32599022 -116918015 - MLT1B LTR MaLR -8 382 278 1 833 874 255 141 12 chr6 32599022 32599348 -116917689 + ORR1D2 LTR MaLR 1 368 -2 1 833 348 314 139 46 chr6 32599348 32599482 -116917555 - MLT1B LTR MaLR -113 277 124 1 833 1062 239 143 3 chr6 32599478 32599806 -116917231 - MTEb LTR MaLR -5 374 1 1 833 235 325 65 8 chr6 32599806 32599929 -116917108 - MLT1B LTR MaLR -244 130 1 1 833 286 345 35 10 chr6 32600282 32600484 -116916553 - Charlie16a DNA MER1_type -7 335 129 1 833 3357 43 5 0 chr6 32600856 32601250 -116915787 + MTA_Mm LTR MaLR 1 396 0 1 833 1140 240 111 21 chr6 32601338 32601670 -116915367 - ORR1D2 LTR MaLR -4 366 5 1 833 275 82 0 39 chr6 32601845 32601885 -116915152 - MT2A LTR ERVL 0 533 495 1 833 201 39 0 0 chr6 32601885 32601911 -116915126 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 833 275 146 61 59 chr6 32601911 32601944 -116915093 - MT2A LTR ERVL -39 516 485 1 833 285 209 0 0 chr6 32601950 32602017 -116915020 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 833 1159 204 61 80 chr6 32602017 32602447 -116914590 - MT2B LTR ERVL -40 561 4 1 833 480 287 50 116 chr6 32602713 32602901 -116914136 + MER2 DNA MER2_type 4 204 -141 1 833 801 239 31 31 chr6 32602901 32603095 -116913942 + B3A SINE B2 5 198 0 1 833 480 287 50 116 chr6 32603095 32603209 -116913828 + MER2 DNA MER2_type 205 286 -59 1 833 197 257 68 41 chr6 32603447 32603520 -116913517 - MIRb SINE MIR -73 195 121 1 833 661 246 86 50 chr6 32603620 32603898 -116913139 - Charlie18a DNA MER1_type -4 338 51 1 833 555 165 0 0 chr6 32604173 32604282 -116912755 + GA-rich Low_complexity Low_complexity 1 109 0 1 833 23 0 0 0 chr6 32605072 32605095 -116911942 + AT_rich Low_complexity Low_complexity 1 23 0 1 833 3084 42 0 0 chr6 32605258 32605612 -116911425 + IAPEY2_LTR LTR ERVK 1 354 -3 1 833 23 0 0 0 chr6 32605798 32605821 -116911216 + AT_rich Low_complexity Low_complexity 1 23 0 1 833 1215 142 62 0 chr6 32606598 32606809 -116910228 - URR1B DNA MER1_type 0 225 2 1 833 183 85 0 60 chr6 32606867 32606917 -116910120 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 1 833 600 342 0 15 chr6 32606952 32607154 -116909883 + ID_B1 SINE B4 3 201 -23 1 833 360 196 0 197 chr6 32607824 32607951 -116909086 - B1F1 SINE Alu 0 149 19 1 833 1554 183 70 0 chr6 32608088 32608388 -116908649 + ORR1A4 LTR MaLR 1 321 -8 1 833 517 339 87 53 chr6 32609032 32609390 -116907647 + MLT1A LTR MaLR 4 373 -1 1 833 255 285 222 6 chr6 32609603 32609783 -116907254 - Kanga1 DNA Tc2 -208 1537 1319 1 833 735 308 83 61 chr6 32609824 32609909 -116907128 - Kanga1 DNA Tc2 -1243 502 423 1 833 714 282 84 73 chr6 32609909 32610292 -116906745 - MLT1B LTR MaLR -2 388 2 1 833 735 308 83 61 chr6 32610292 32610697 -116906340 - Kanga1 DNA Tc2 -1323 422 1 1 833 22 35 0 0 chr6 32610733 32610762 -116906275 + AT_rich Low_complexity Low_complexity 1 29 0 1 833 309 340 36 55 chr6 32611311 32611465 -116905572 + L1MC4a LINE L1 5647 5802 -2080 1 833 1423 150 0 22 chr6 32611465 32611696 -116905341 - URR1A DNA MER1_type 0 226 1 1 833 309 340 36 55 chr6 32611696 32611815 -116905222 + L1MC4a LINE L1 5803 5915 -1967 1 833 919 322 22 6 chr6 32611824 32612143 -116904894 + Lx9 LINE L1 7094 7417 -227 1 833 363 23 0 0 chr6 32612144 32612188 -116904849 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 833 204 158 0 0 chr6 32612590 32612628 -116904409 + GA-rich Low_complexity Low_complexity 2 39 0 1 833 666 117 0 0 chr6 32612972 32613092 -116903945 + (TG)n Simple_repeat Simple_repeat 2 121 0 1 833 225 308 107 8 chr6 32613189 32613310 -116903727 + MER112 DNA MER1_type 25 157 -104 1 833 779 172 44 13 chr6 32613331 32613490 -116903547 + URR1A DNA MER1_type 1 164 -62 1 833 1407 246 64 3 chr6 32614843 32615189 -116901848 + MTEa LTR MaLR 13 379 0 1 833 252 86 0 0 chr6 32615923 32615958 -116901079 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 833 201 340 0 11 chr6 32615974 32616069 -116900968 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 833 646 256 174 28 chr6 32616549 32616911 -116900126 + L1MD3 LINE L1 7580 7994 -1 1 833 204 67 0 0 chr6 32617298 32617328 -116899709 + (T)n Simple_repeat Simple_repeat 1 30 0 1 833 470 310 32 128 chr6 32618238 32618612 -116898425 + ORR1E LTR MaLR 21 358 -1 1 833 3118 235 75 26 chr6 32620058 32620875 -116896162 + RMER13A LTR ERVK 1 857 -3 1 833 239 304 0 0 chr6 32621036 32621092 -116895945 - B4 SINE B4 -19 273 218 1 833 683 112 39 16 chr6 32621328 32621455 -116895582 - Lx9 LINE L1 -3 7641 7512 1 833 1019 173 69 26 chr6 32621455 32621686 -116895351 + Lx9 LINE L1 7244 7484 -160 1 833 231 125 0 0 chr6 32621713 32621753 -116895284 + (CTTG)n Simple_repeat Simple_repeat 4 43 0 1 833 732 179 14 28 chr6 32621753 32621897 -116895140 - B1_Mur2 SINE Alu -2 147 6 1 833 435 68 0 0 chr6 32622340 32622399 -116894638 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 833 617 0 14 0 chr6 32622400 32622473 -116894564 + (GGAA)n Simple_repeat Simple_repeat 2 75 0 1 833 1107 305 25 6 chr6 32622485 32622851 -116894186 - Lx7 LINE L1 -384 7312 6940 1 833 670 283 21 11 chr6 32622872 32622888 -116894149 - B3A SINE B2 -6 192 174 1 833 288 0 0 0 chr6 32622888 32622920 -116894117 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 833 670 283 21 11 chr6 32622920 32623092 -116893945 - B3A SINE B2 -25 173 3 1 833 274 404 87 26 chr6 32623216 32623709 -116893328 - LTR78 LTR ERV1 -10 1294 772 1 833 378 0 0 0 chr6 32623712 32623754 -116893283 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 833 270 0 0 0 chr6 32624077 32624107 -116892930 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 833 1117 45 0 0 chr6 32624107 32624240 -116892797 - B1_Mm SINE Alu -10 137 5 1 833 347 324 104 11 chr6 32624361 32624648 -116892389 + L1ME3B LINE L1 5640 5953 -287 1 833 1095 290 36 16 chr6 32625928 32626293 -116890744 + MTE2b LTR MaLR 3 374 -5 1 833 432 0 0 0 chr6 32628570 32628618 -116888419 + (TGG)n Simple_repeat Simple_repeat 3 50 0 1 833 243 0 0 0 chr6 32628803 32628830 -116888207 + (A)n Simple_repeat Simple_repeat 1 27 0 1 833 217 242 29 29 chr6 32629063 32629131 -116887906 + CT-rich Low_complexity Low_complexity 2 69 0 1 833 226 256 118 110 chr6 32629491 32629627 -116887410 + MTEa LTR MaLR 1 137 -222 1 833 238 234 77 96 chr6 32629738 32629842 -116887195 + MTEa LTR MaLR 278 379 0 1 833 444 275 49 27 chr6 32630848 32631031 -116886006 - ORR1E LTR MaLR -167 192 6 1 833 1809 197 68 33 chr6 32631091 32631628 -116885409 + BGLII_B LTR ERVK 1 433 -8 1 833 712 279 157 31 chr6 32631905 32632160 -116884877 - B4 SINE B4 -4 288 2 1 833 254 265 97 10 chr6 32632319 32632422 -116884615 + Charlie19a DNA Charlie 178 289 -97 1 833 465 310 89 69 chr6 32632984 32633334 -116883703 + ORR1E LTR MaLR 1 357 -2 1 833 554 286 125 0 chr6 32633824 32634034 -116883003 + LTR40b LTR ERVL 14 307 -212 1 833 1174 240 69 60 chr6 32634034 32634366 -116882671 + ORR1D2 LTR MaLR 4 338 -32 1 833 614 214 56 0 chr6 32634718 32634844 -116882193 - B1_Mur1 SINE Alu -5 144 12 1 833 1550 234 57 8 chr6 32635678 32636049 -116880988 - MTD LTR MaLR -14 405 17 1 104 3011 87 57 20 chr6 32636582 32637040 -116879997 - IAPLTR2_Mm LTR ERVK 0 475 1 1 834 14645 51 10 0 chr6 32637042 32638797 -116878240 - IAPEz-int LTR ERVK -2 6479 4708 1 834 1899 86 4 0 chr6 32638822 32639067 -116877970 - IAPEz-int LTR ERVK -5183 2497 2252 1 834 952 67 0 0 chr6 32639068 32639187 -116877850 - IAPEz-int LTR ERVK -5004 1477 1359 1 834 3612 61 7 16 chr6 32639187 32639762 -116877275 - IAPEz-int LTR ERVK -5819 662 168 1 834 226 327 0 0 chr6 32639762 32639817 -116877220 - RLTR27 LTR ERVK -34 275 221 1 834 1254 66 10 98 chr6 32639817 32640020 -116877017 - IAPEz-int LTR ERVK -6288 193 9 1 834 3033 86 24 70 chr6 32640021 32640519 -116876518 - IAPLTR2_Mm LTR ERVK 0 475 1 1 834 216 382 29 29 chr6 32640578 32640718 -116876319 + MIR SINE MIR 25 164 -98 1 834 189 0 0 0 chr6 32640773 32640794 -116876243 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2 834 767 127 97 0 chr6 32641860 32641994 -116875043 + Lx2 LINE L1 6848 6994 -3 2 834 27 0 0 0 chr6 32641994 32642021 -116875016 + AT_rich Low_complexity Low_complexity 1 27 0 2 834 351 192 0 0 chr6 32642736 32642814 -116874223 + GA-rich Low_complexity Low_complexity 2 79 0 2 834 255 0 64 43 chr6 32643129 32643176 -116873861 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 2 834 590 275 22 142 chr6 32644162 32644387 -116872650 - RMER30 DNA MER1_type -4 198 1 2 834 250 344 32 19 chr6 32644703 32644857 -116872180 - L2c LINE L2 -56 3331 3176 2 834 633 254 105 57 chr6 32644931 32645140 -116871897 + ID_B1 SINE B4 6 224 0 2 834 222 116 0 0 chr6 32645163 32645206 -116871831 + (A)n Simple_repeat Simple_repeat 1 43 0 2 834 2389 90 12 9 chr6 32645478 32645804 -116871233 + ORR1A2 LTR MaLR 1 327 0 2 834 204 200 0 0 chr6 32646367 32646412 -116870625 + (CCCCAG)n Simple_repeat Simple_repeat 5 49 0 2 834 879 228 49 12 chr6 32647001 32647252 -116869785 - L1MB3 LINE L1 -150 6033 5774 2 834 191 350 82 10 chr6 32648581 32648679 -116868358 - L2b LINE L2 -193 3182 3078 2 834 259 298 83 32 chr6 32648916 32649072 -116867965 + MIR SINE MIR 20 183 -79 2 834 227 333 39 0 chr6 32649312 32649414 -116867623 + L2a LINE L2 3305 3410 -16 2 834 1000 294 72 58 chr6 32649431 32650004 -116867033 - L3 LINE CR1 -561 3928 3348 2 834 421 342 116 15 chr6 32650631 32650958 -116866079 - MLT2D LTR ERVL -48 366 7 2 834 2675 131 7 15 chr6 32651769 32652179 -116864858 + MTB_Mm LTR MaLR 1 407 0 2 834 672 294 52 28 chr6 32652909 32653196 -116863841 + MLT1D LTR MaLR 212 505 0 2 834 486 0 0 0 chr6 32653907 32653961 -116863076 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 834 281 288 41 0 chr6 32654155 32654228 -116862809 - MER63C DNA AcHobo -577 353 278 2 834 211 136 0 22 chr6 32654531 32654576 -116862461 - MIRb SINE MIR -100 168 125 2 834 448 56 0 27 chr6 32654854 32654928 -116862109 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 834 243 0 0 0 chr6 32655379 32655406 -116861631 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 834 198 179 0 0 chr6 32656806 32656845 -116860192 + MIRc SINE MIR 195 233 -35 2 834 299 272 98 49 chr6 32657559 32657702 -116859335 + B4A SINE B4 27 176 -116 2 834 464 0 18 0 chr6 32657709 32657765 -116859272 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 834 914 244 74 5 chr6 32659766 32659968 -116857069 + ID_B1 SINE B4 2 217 -7 2 834 216 0 0 0 chr6 32661259 32661283 -116855754 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 834 183 42 0 0 chr6 32661283 32661306 -116855731 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 834 1029 95 0 0 chr6 32661306 32661452 -116855585 + (GA)n Simple_repeat Simple_repeat 2 148 0 2 834 403 272 0 81 chr6 32661720 32661844 -116855193 + PB1D10 SINE Alu 3 116 -1 2 834 264 215 14 62 chr6 32663554 32663638 -116853399 + Lx7 LINE L1 5666 5781 -343 2 834 393 218 11 11 chr6 32664619 32664673 -116852364 - PB1D10 SINE Alu -29 88 35 2 834 1254 251 78 17 chr6 32664673 32665030 -116852007 + MTE2b LTR MaLR 1 379 0 2 834 393 218 11 11 chr6 32665030 32665063 -116851974 - PB1D10 SINE Alu -83 34 1 2 834 632 252 21 7 chr6 32665722 32665866 -116851171 - B1F2 SINE Alu -2 147 2 2 834 262 237 26 13 chr6 32665907 32665984 -116851053 - MIRb SINE MIR -138 130 53 2 834 653 303 9 27 chr6 32666478 32666702 -116850335 - MLT1A1 LTR MaLR -45 363 144 2 834 273 259 76 90 chr6 32666717 32666861 -116850176 - MTEb LTR MaLR -34 345 204 2 834 249 270 27 13 chr6 32666905 32666980 -116850057 - MTEb LTR MaLR -276 83 8 2 834 446 255 0 0 chr6 32667374 32667468 -116849569 + RSINE1 SINE B4 3 96 -69 2 834 888 10 0 0 chr6 32667589 32667690 -116849347 + (TTC)n Simple_repeat Simple_repeat 1 101 0 2 834 1487 247 172 35 chr6 32668907 32669536 -116847501 - L1MB3 LINE L1 -18 6165 5451 2 834 640 164 11 0 chr6 32669583 32669760 -116847277 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 834 465 99 0 0 chr6 32670102 32670183 -116846854 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 834 309 158 0 0 chr6 32670649 32670731 -116846306 + A-rich Low_complexity Low_complexity 1 82 0 2 834 839 267 40 0 chr6 32671385 32671610 -116845427 - MTE2b LTR MaLR -120 259 26 2 834 369 0 0 0 chr6 32672076 32672117 -116844920 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2 834 731 316 62 36 chr6 32672560 32672836 -116844201 - B4 SINE B4 -4 288 6 2 834 220 304 94 94 chr6 32672846 32672973 -116844064 - L2b LINE L2 -5 3382 3256 2 834 265 210 58 10 chr6 32675295 32675394 -116841643 - HAL1 LINE L1 -173 2334 2249 2 834 216 103 0 25 chr6 32675922 32675962 -116841075 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 2 834 487 264 108 72 chr6 32676067 32676304 -116840733 + B4A SINE B4 1 273 -19 2 834 204 179 0 0 chr6 32676304 32676343 -116840694 + CT-rich Low_complexity Low_complexity 1 39 0 2 834 272 227 112 11 chr6 32676467 32676556 -116840481 - HAL1 LINE L1 -742 1765 1668 2 834 1441 172 130 45 chr6 32676692 32677046 -116839991 + ORR1C2 LTR MaLR 1 384 0 2 834 539 284 41 26 chr6 32677154 32677349 -116839688 - B3A SINE B2 0 198 1 2 834 506 292 15 65 chr6 32677852 32678053 -116838984 - B4A SINE B4 -18 274 84 2 834 1035 267 54 33 chr6 32679316 32679649 -116837388 - MTE2b LTR MaLR -39 340 1 2 834 374 261 8 63 chr6 32679793 32679920 -116837117 - MER58A DNA MER1_type -76 148 29 2 834 1099 263 146 14 chr6 32680060 32680430 -116836607 - MTD LTR MaLR 0 419 1 2 834 2070 269 117 45 chr6 32680440 32681182 -116835855 - MTD-int LTR MaLR -9 1249 466 2 834 279 0 0 0 chr6 32681182 32681213 -116835824 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 834 2070 263 221 39 chr6 32681213 32681597 -116835440 - MTD-int LTR MaLR -793 465 1 2 834 1025 271 61 89 chr6 32681599 32682028 -116835009 - MTD LTR MaLR -2 417 1 2 834 483 323 0 19 chr6 32682643 32682801 -116834236 + RSINE1 SINE B4 4 158 -7 2 834 260 146 0 35 chr6 32682813 32682870 -116834167 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2 834 361 308 34 8 chr6 32682884 32683002 -116834035 + L1M3 LINE L1 5596 5716 -452 2 834 426 246 117 6 chr6 32683249 32683429 -116833608 + MER2 DNA MER2_type 26 225 -120 2 834 643 300 73 46 chr6 32683430 32683689 -116833348 + B4A SINE B4 2 267 -25 2 834 354 279 36 7 chr6 32683737 32683874 -116833163 - RLTR21 LTR ERVK -314 1258 1118 2 834 1152 52 7 0 chr6 32684259 32684414 -116832623 - L1Md_F2 LINE L1 0 6582 6427 2 834 251 274 143 87 chr6 32685667 32685863 -116831174 + MLT1A1 LTR MaLR 20 226 -182 2 834 270 177 48 48 chr6 32685922 32686005 -116831032 + MLT1A1 LTR MaLR 325 407 -1 2 834 320 236 43 11 chr6 32686274 32686368 -116830669 - Lx9 LINE L1 -14 7630 7534 2 834 537 258 49 6 chr6 32686821 32687004 -116830033 - MER3 DNA MER1_type -7 202 12 2 834 3393 179 16 21 chr6 32687663 32688329 -116828708 + L1_Mur2 LINE L1 4624 5286 -591 2 834 870 47 0 0 chr6 32688302 32688408 -116828629 + Lx5 LINE L1 6392 6497 -553 2 834 2118 148 81 0 chr6 32688409 32688766 -116828271 + Lx5 LINE L1 6665 7050 0 2 834 732 194 0 0 chr6 32689913 32690042 -116826995 + MTEb LTR MaLR 2 130 -249 2 834 37688 18 1 27 chr6 32690569 32695879 -116821158 + L1Md_A LINE L1 416 5586 -297 2 834 8695 29 0 0 chr6 32695879 32696875 -116820162 + L1Md_A LINE L1 5587 6582 0 2 834 720 208 35 7 chr6 32696951 32697096 -116819941 + B1_Mur4 SINE Alu 2 150 0 2 834 1410 60 0 0 chr6 32697150 32697418 -116819619 + (CA)n Simple_repeat Simple_repeat 1 268 0 2 834 831 221 36 21 chr6 32698018 32698212 -116818825 - B3A SINE B2 0 198 2 2 834 342 333 105 40 chr6 32698248 32698495 -116818542 - MER57C2 LTR ERV1 -77 357 95 2 834 535 285 28 46 chr6 32699889 32700106 -116816931 + B3 SINE B2 1 213 -3 2 834 243 234 60 60 chr6 32700389 32700489 -116816548 - L1MA9 LINE L1 -94 6218 6119 2 834 413 205 171 16 chr6 32700879 32701008 -116816029 + B1_Mur3 SINE Alu 1 149 0 2 834 574 291 46 7 chr6 32701036 32701188 -116815849 + RSINE1 SINE B4 8 165 0 2 834 207 0 0 0 chr6 32701191 32701214 -116815823 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 834 1219 248 56 9 chr6 32701962 32702300 -116814737 + ORR1E LTR MaLR 2 355 -4 2 834 498 91 0 0 chr6 32702334 32702411 -116814626 + (ATG)n Simple_repeat Simple_repeat 3 79 0 2 834 382 245 35 35 chr6 32702642 32702786 -116814251 - B1F SINE Alu -1 148 5 2 834 1100 163 23 54 chr6 32703174 32703395 -116813642 + B3 SINE B2 3 216 0 2 834 201 237 17 0 chr6 32704093 32704151 -116812886 - L2c LINE L2 -5 3421 3330 2 834 184 351 121 8 chr6 32704427 32704559 -116812478 - MIR3 SINE MIR -29 179 33 2 834 234 227 0 0 chr6 32704904 32704948 -116812089 + (CG)n Simple_repeat Simple_repeat 1 44 0 2 834 189 0 0 0 chr6 32704949 32704970 -116812067 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 834 1119 211 148 11 chr6 32705371 32705654 -116811383 + Lx8 LINE L1 6823 7144 -329 2 834 452 218 140 73 chr6 32705719 32705897 -116811140 + Lx8 LINE L1 7277 7466 -7 2 834 197 333 15 15 chr6 32706219 32706286 -116810751 - MIRc SINE MIR -179 89 23 2 834 1208 71 27 0 chr6 32706396 32706579 -116810458 + B2_Mm1t SINE B2 6 193 0 2 834 279 0 0 0 chr6 32707098 32707129 -116809908 + (T)n Simple_repeat Simple_repeat 1 31 0 2 834 234 0 0 0 chr6 32707481 32707507 -116809530 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 834 207 0 0 0 chr6 32707631 32707654 -116809383 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 2 834 332 342 9 0 chr6 32707880 32707994 -116809043 + MLT1F1 LTR MaLR 11 125 -423 2 834 223 371 0 0 chr6 32708043 32708105 -116808932 + ID4 SINE ID 12 73 -10 3 834 183 152 0 0 chr6 32708139 32708185 -116808852 + T-rich Low_complexity Low_complexity 1 46 0 3 834 338 287 78 26 chr6 32708248 32708402 -116808635 + MLT1F1 LTR MaLR 389 550 -19 2 834 728 277 161 44 chr6 32708725 32709198 -116807839 + MT2A LTR ERVL 1 528 -5 3 834 291 280 0 47 chr6 32709865 32709951 -116807086 + MLT1H2 LTR MaLR 44 125 -364 3 834 233 247 32 63 chr6 32712014 32712109 -116804928 + CT-rich Low_complexity Low_complexity 6 97 0 3 834 650 209 0 0 chr6 32712973 32713088 -116803949 + B3 SINE B2 1 115 -101 3 834 312 48 0 0 chr6 32713388 32713430 -116803607 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 834 556 229 36 1 chr6 32714228 32714381 -116802656 + MLT2D LTR ERVL 89 245 -152 3 834 669 267 56 17 chr6 32714722 32714901 -116802136 - Lx8 LINE L1 -947 6526 6341 3 834 1157 140 35 0 chr6 32714905 32715105 -116801932 - URR1B DNA MER1_type -2 223 17 3 834 269 204 0 18 chr6 32715108 32715163 -116801874 - Lx9 LINE L1 -1163 6481 6428 3 834 383 218 102 64 chr6 32715402 32715533 -116801504 + ID_B1 SINE B4 80 222 -2 3 834 633 61 0 0 chr6 32715552 32715634 -116801403 + (GA)n Simple_repeat Simple_repeat 2 83 0 3 834 272 278 65 65 chr6 32715820 32715974 -116801063 - MER77 LTR ERVL -87 520 367 3 834 2864 303 62 49 chr6 32716076 32716448 -116800589 + Lx8 LINE L1 6011 6369 -1104 3 834 1286 167 37 5 chr6 32716448 32716665 -116800372 + URR1B DNA MER1_type 1 224 -1 3 834 2864 303 62 49 chr6 32716665 32717559 -116799478 + Lx8 LINE L1 6370 7293 -180 3 834 452 208 17 0 chr6 32718033 32718153 -116798884 + (TATG)n Simple_repeat Simple_repeat 4 125 0 3 834 831 149 0 0 chr6 32718179 32718333 -116798704 + (TG)n Simple_repeat Simple_repeat 1 154 0 3 834 464 269 17 9 chr6 32718333 32718449 -116798588 - PB1 SINE Alu -5 122 6 3 834 210 158 0 0 chr6 32719007 32719045 -116797992 + A-rich Low_complexity Low_complexity 2 39 0 3 834 3244 49 13 3 chr6 32719155 32719547 -116797490 + MTA_Mm LTR MaLR 1 396 0 3 834 283 252 48 57 chr6 32720904 32721009 -116796028 + PB1D10 SINE Alu 2 105 -12 3 834 227 273 79 11 chr6 32721546 32721635 -116795402 + MLT1A1 LTR MaLR 76 170 -238 3 834 272 273 27 58 chr6 32721748 32721889 -116795148 + MTEb LTR MaLR 226 364 -15 3 834 372 43 0 0 chr6 32723818 32723864 -116793173 + (CAG)n Simple_repeat Simple_repeat 1 46 0 3 834 1356 271 135 38 chr6 32724579 32725246 -116791791 + L1MB8 LINE L1 4934 5654 -524 3 834 896 246 66 10 chr6 32725246 32725443 -116791594 + B3 SINE B2 3 210 -6 3 834 1356 266 118 61 chr6 32725443 32725807 -116791230 + L1MB8 LINE L1 5655 6046 -132 3 834 560 231 0 117 chr6 32726857 32727063 -116789974 + B3A SINE B2 1 182 -16 3 834 29 47 0 0 chr6 32727072 32727115 -116789922 + AT_rich Low_complexity Low_complexity 1 43 0 3 834 393 46 151 38 chr6 32727311 32727470 -116789567 + (GCTG)n Simple_repeat Simple_repeat 4 180 0 3 834 444 230 363 0 chr6 32727638 32727864 -116789173 - L1MB5 LINE L1 -137 6037 5730 3 834 238 276 16 5 chr6 32727935 32728041 -116788996 - L1MB5 LINE L1 -460 5724 5617 3 834 321 291 112 0 chr6 32728170 32728304 -116788733 - B4A SINE B4 -1 291 143 3 834 225 94 0 0 chr6 32728436 32728468 -116788569 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 834 262 270 16 16 chr6 32728604 32728668 -116788369 - B4A SINE B4 -194 98 35 3 834 353 260 20 20 chr6 32728684 32728786 -116788251 - L1MB5 LINE L1 -737 5437 5336 3 834 1436 231 52 24 chr6 32728920 32729289 -116787748 - MTEb LTR MaLR 0 379 1 3 834 590 318 91 53 chr6 32729540 32729938 -116787099 - MLT1L LTR MaLR -197 413 1 3 834 348 152 0 0 chr6 32730405 32730471 -116786566 + CT-rich Low_complexity Low_complexity 4 69 0 3 834 326 227 40 0 chr6 32731244 32731319 -116785718 + MIRc SINE MIR 78 155 -113 3 834 243 308 16 123 chr6 32731524 32731646 -116785391 + AluG_3 SINE Alu 1 220 -91 3 834 698 266 92 19 chr6 32731841 32732048 -116784989 - ID_B1 SINE B4 -2 222 1 3 834 548 254 15 0 chr6 32732423 32732557 -116784480 + ID_B1 SINE B4 82 217 -7 3 834 538 229 107 13 chr6 32732617 32732776 -116784261 - L1M5 LINE L1 -811 5335 5162 3 834 479 230 7 36 chr6 32733512 32733652 -116783385 + MLT1A1 LTR MaLR 268 403 -5 3 834 242 231 25 13 chr6 32733696 32733775 -116783262 - L1MC4 LINE L1 -850 7192 7113 3 834 975 253 113 19 chr6 32733876 32734246 -116782791 - L1MC4 LINE L1 -1169 6873 6469 3 834 469 333 118 46 chr6 32734920 32735761 -116781276 + L2a LINE L2 2355 3256 -170 3 834 23 33 0 0 chr6 32735962 32735992 -116781045 + AT_rich Low_complexity Low_complexity 1 30 0 3 834 310 294 35 0 chr6 32736467 32736552 -116780485 - B4 SINE B4 -96 196 109 3 834 227 29 57 0 chr6 32736618 32736653 -116780384 + (TGGGGG)n Simple_repeat Simple_repeat 4 40 0 3 834 425 259 163 54 chr6 32738524 32738610 -116778427 + ID_B1 SINE B4 15 93 -131 3 834 3346 43 2 5 chr6 32738610 32739007 -116778030 + MTA_Mm LTR MaLR 1 396 0 3 834 425 259 163 54 chr6 32739007 32739096 -116777941 + ID_B1 SINE B4 94 210 -14 3 834 207 100 0 0 chr6 32739096 32739126 -116777911 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 3 834 180 0 0 0 chr6 32739427 32739447 -116777590 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 834 426 333 40 0 chr6 32741519 32741693 -116775344 - B3A SINE B2 -16 182 2 3 834 2035 110 6 12 chr6 32743695 32743962 -116773075 + ORR1A2 LTR MaLR 1 268 -59 3 834 858 98 0 0 chr6 32743962 32744085 -116772952 + L1_Mus2 LINE L1 6444 6566 0 3 834 2035 110 6 12 chr6 32744085 32744139 -116772898 + ORR1A2 LTR MaLR 269 320 -7 3 834 378 0 0 0 chr6 32745456 32745498 -116771539 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 834 591 15 0 0 chr6 32745498 32745565 -116771472 + (GA)n Simple_repeat Simple_repeat 1 68 0 3 834 323 282 0 96 chr6 32749601 32749695 -116767342 + PB1D9 SINE Alu 2 86 -34 3 834 891 87 0 0 chr6 32749722 32749848 -116767189 + (GAA)n Simple_repeat Simple_repeat 3 128 0 3 834 2835 49 3 3 chr6 32749925 32750273 -116766764 - L1_Mus1 LINE L1 0 6567 6220 3 834 3581 15 2 0 chr6 32752897 32753292 -116763745 + MTA_Mm LTR MaLR 1 396 0 3 834 351 140 0 37 chr6 32753523 32753595 -116763442 - ID4_ SINE ID -78 74 9 3 834 367 272 79 8 chr6 32753609 32753735 -116763302 - B1F SINE Alu -9 140 6 3 834 25 75 0 0 chr6 32755089 32755142 -116761895 + AT_rich Low_complexity Low_complexity 1 53 0 3 834 249 346 12 0 chr6 32755926 32755947 -116761090 + (CACG)n Simple_repeat Simple_repeat 1 22 0 3 834 360 0 0 0 chr6 32755947 32755987 -116761050 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 834 272 338 0 0 chr6 32755987 32756058 -116760979 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 834 450 210 182 16 chr6 32757055 32757181 -116759856 - B1_Mur2 SINE Alu -1 148 2 3 834 821 118 0 22 chr6 32759108 32759247 -116757790 - URR1A DNA MER1_type 0 226 91 3 834 356 194 141 10 chr6 32759498 32759597 -116757440 + PB1D7 SINE Alu 9 120 0 3 834 334 313 82 27 chr6 32759627 32759811 -116757226 + MER2 DNA MER2_type 149 342 -3 3 834 184 358 0 15 chr6 32761901 32761969 -116755068 - L4 LINE RTE -909 1120 1054 3 834 614 285 153 24 chr6 32762639 32762894 -116754143 - B4A SINE B4 0 292 5 3 834 215 243 186 0 chr6 32765210 32765280 -116751757 + PB1D10 SINE Alu 34 116 -1 3 834 21 0 0 0 chr6 32767841 32767862 -116749175 + AT_rich Low_complexity Low_complexity 1 21 0 3 104 3609 87 26 94 chr6 32767873 32768007 -116749030 + L1_Mus3 LINE L1 6094 6224 -414 3 835 987 86 8 0 chr6 32768007 32768135 -116748902 + B1_Mus1 SINE Alu 2 130 -18 3 835 3609 87 26 94 chr6 32768135 32768584 -116748453 + L1_Mus3 LINE L1 6225 6637 -1 3 835 479 283 92 0 chr6 32769677 32769850 -116747187 + MER3 DNA MER1_type 1 189 -20 3 835 190 357 12 12 chr6 32771249 32771334 -116745703 + MIR SINE MIR 52 136 -126 3 835 993 248 56 79 chr6 32772176 32772531 -116744506 + ORR1E LTR MaLR 7 353 -6 3 835 6443 80 2 5 chr6 32779804 32780657 -116736380 - L1Md_F2 LINE L1 -4 6578 5728 3 835 21905 82 16 11 chr6 32780652 32784429 -116732608 - L1Md_F LINE L1 -1713 4170 374 3 835 214 133 44 0 chr6 32784626 32784671 -116732366 + A-rich Low_complexity Low_complexity 2 48 0 3 835 426 287 74 0 chr6 32784957 32785065 -116731972 - B3A SINE B2 -80 118 3 3 835 573 215 36 36 chr6 32785114 32785254 -116731783 - RSINE1 SINE B4 -21 144 5 3 835 1769 284 78 134 chr6 32788471 32788989 -116728048 + Lx8 LINE L1 4146 4635 -1212 3 835 234 0 0 0 chr6 32788989 32789015 -116728022 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 835 1769 284 78 134 chr6 32789015 32789866 -116727171 + Lx8 LINE L1 4636 5425 -422 3 835 576 185 425 13 chr6 32789866 32790019 -116727018 + B3 SINE B2 1 216 0 3 835 3720 276 123 73 chr6 32790019 32790539 -116726498 + Lx8 LINE L1 5426 5966 -1507 3 835 1982 165 82 34 chr6 32790539 32790927 -116726110 + MTB_Mm LTR MaLR 1 407 0 3 835 3720 273 141 50 chr6 32790927 32792156 -116724881 + Lx8 LINE L1 5967 7331 -142 3 835 330 26 0 0 chr6 32792156 32792195 -116724842 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 3 835 3720 273 141 50 chr6 32792195 32792285 -116724752 + Lx8 LINE L1 7332 7438 -35 3 835 318 217 125 42 chr6 32792599 32792719 -116724318 - L1ME2 LINE L1 -127 6037 5908 3 835 526 282 159 38 chr6 32792834 32793206 -116723831 - L1ME2 LINE L1 -709 5735 5319 3 835 397 299 102 10 chr6 32795201 32795397 -116721640 - B3 SINE B2 -2 214 1 3 835 374 231 12 25 chr6 32797697 32797777 -116719260 - ID4_ SINE ID -2 81 3 3 835 432 262 19 9 chr6 32797926 32798034 -116719003 - RSINE1 SINE B4 -53 112 4 3 835 259 140 32 81 chr6 32799989 32800051 -116716986 + B1_Mur4 SINE Alu 5 63 -87 3 835 409 281 153 30 chr6 32800097 32800299 -116716738 + MLT1B LTR MaLR 90 316 -74 3 835 270 302 118 25 chr6 32801079 32801198 -116715839 + ID_B1 SINE B4 93 222 -2 3 835 232 61 19 58 chr6 32801255 32801307 -116715730 + (TTTTTG)n Simple_repeat Simple_repeat 6 55 0 3 835 455 219 102 1 chr6 32802691 32802799 -116714238 + B1_Mur1 SINE Alu 1 117 -32 3 835 240 324 56 67 chr6 32803979 32804174 -116712863 + MIRc SINE MIR 25 217 -51 3 835 22 0 0 0 chr6 32804611 32804633 -116712404 + AT_rich Low_complexity Low_complexity 1 22 0 3 835 300 27 0 0 chr6 32805506 32805543 -116711494 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 835 282 215 154 0 chr6 32805634 32805699 -116711338 - B4A SINE B4 -199 93 19 4 835 611 294 146 8 chr6 32805722 32806079 -116710958 - L1MC4a LINE L1 -195 7687 7282 4 835 1162 222 102 72 chr6 32806790 32807153 -116709884 - ORR1D1 LTR MaLR 0 374 1 4 835 261 132 38 0 chr6 32807763 32807816 -116709221 + U6 snRNA snRNA 21 75 -32 4 835 180 0 0 0 chr6 32808218 32808238 -116708799 + (T)n Simple_repeat Simple_repeat 1 20 0 4 835 212 316 204 11 chr6 32808607 32808783 -116708254 + MIR SINE MIR 2 211 -51 4 835 25 0 0 0 chr6 32808965 32808990 -116708047 + GC_rich Low_complexity Low_complexity 1 25 0 4 835 463 163 29 67 chr6 32809002 32809107 -116707930 + PB1D7 SINE Alu 12 112 -8 4 835 387 56 0 0 chr6 32809108 32809162 -116707875 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 835 1122 228 9 5 chr6 32809566 32809778 -116707259 - B3 SINE B2 -2 214 2 4 835 666 267 25 64 chr6 32809830 32810034 -116707003 - B3A SINE B2 -2 196 1 4 835 1899 208 107 26 chr6 32810804 32811399 -116705638 + RMER19A LTR ERVK 1 611 0 4 835 332 335 66 87 chr6 32811775 32812063 -116704974 - MLT1J LTR MaLR -7 505 224 4 835 459 248 131 26 chr6 32813245 32813398 -116703639 - ORR1E LTR MaLR -168 191 23 4 835 198 233 166 6 chr6 32815305 32815390 -116701647 + MIR SINE MIR 41 136 -72 4 835 2032 162 60 20 chr6 32815429 32815597 -116701440 + MTC LTR MaLR 1 184 -237 4 835 3124 58 5 115 chr6 32815597 32815851 -116701186 - MTA_Mm LTR MaLR 0 396 192 4 835 1268 48 7 0 chr6 32815851 32815997 -116701040 - B1_Mm SINE Alu 0 147 1 4 835 3124 58 5 115 chr6 32815997 32816187 -116700850 - MTA_Mm LTR MaLR -205 191 1 4 835 2032 162 60 20 chr6 32816187 32816415 -116700622 + MTC LTR MaLR 185 413 -8 4 835 252 56 0 0 chr6 32816450 32816477 -116700560 + (T)n Simple_repeat Simple_repeat 1 27 0 4 835 207 0 0 0 chr6 32816477 32816500 -116700537 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 835 252 56 0 0 chr6 32816500 32816508 -116700529 + (T)n Simple_repeat Simple_repeat 1 8 0 4 835 420 20 0 0 chr6 32817210 32817259 -116699778 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 835 1406 151 40 0 chr6 32817389 32817614 -116699423 - ORR1A2 LTR MaLR -51 276 43 4 835 9117 11 0 0 chr6 32817627 32819059 -116697978 - L1Md_T LINE L1 0 6582 5151 4 835 373 172 0 0 chr6 32819059 32819123 -116697914 - ORR1A2 LTR MaLR -263 64 1 4 835 2528 150 5 5 chr6 32819123 32819551 -116697486 - ORR1A2-int LTR MaLR 0 1792 1365 4 835 483 239 73 60 chr6 32819700 32819851 -116697186 + RSINE1 SINE B4 3 155 -10 4 835 748 98 54 0 chr6 32820555 32820667 -116696370 - B3 SINE B2 -98 118 1 4 835 344 194 30 0 chr6 32820700 32820767 -116696270 - RMER30 DNA MER1_type -31 171 103 4 835 900 251 20 25 chr6 32822062 32822266 -116694771 + B3 SINE B2 11 213 -3 4 835 270 116 0 0 chr6 32825480 32825523 -116691514 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 835 189 324 117 27 chr6 32825562 32825673 -116691364 - L3 LINE CR1 -4 4485 4365 4 835 300 292 43 34 chr6 32825769 32825886 -116691151 - L1MA8 LINE L1 -49 6242 6125 4 835 250 295 0 0 chr6 32826893 32826954 -116690083 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 4 835 240 273 0 70 chr6 32827016 32827087 -116689950 - ID_B1 SINE B4 -91 133 68 4 835 27 0 0 0 chr6 32827176 32827203 -116689834 + AT_rich Low_complexity Low_complexity 1 27 0 4 835 196 200 200 0 chr6 32828288 32828338 -116688699 + MIRm SINE MIR 27 86 -190 4 835 236 294 74 99 chr6 32828308 32828470 -116688567 + MIRb SINE MIR 57 214 -54 4 835 219 309 137 63 chr6 32829005 32829195 -116687842 + L2a LINE L2 3222 3425 -1 4 835 207 69 0 0 chr6 32829239 32829268 -116687769 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 835 812 242 112 5 chr6 32830297 32830484 -116686553 - B3 SINE B2 -9 207 1 4 835 217 0 29 29 chr6 32831090 32831124 -116685913 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 835 255 114 0 0 chr6 32831447 32831491 -116685546 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 835 285 29 0 0 chr6 32831591 32831625 -116685412 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 4 835 477 0 0 0 chr6 32831644 32831697 -116685340 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 835 220 277 80 22 chr6 32833697 32833782 -116683255 + B4 SINE B4 71 155 -137 4 835 668 78 34 8 chr6 32835363 32835480 -116681557 + (GGAA)n Simple_repeat Simple_repeat 2 121 0 4 835 23 0 0 0 chr6 32836795 32836818 -116680219 + AT_rich Low_complexity Low_complexity 1 23 0 4 835 213 65 0 0 chr6 32838613 32838644 -116678393 + (TTAG)n Simple_repeat Simple_repeat 3 33 0 4 835 24 0 0 0 chr6 32842959 32842983 -116674054 + AT_rich Low_complexity Low_complexity 1 24 0 4 835 321 320 149 14 chr6 32843850 32844072 -116672965 + L1M5 LINE L1 5363 5614 -510 4 835 973 239 78 44 chr6 32844263 32844620 -116672417 + MTD LTR MaLR 51 404 -15 4 835 1092 95 0 0 chr6 32844707 32844854 -116672183 - B1_Mus2 SINE Alu 0 147 1 4 835 469 220 97 35 chr6 32845419 32845532 -116671505 - PB1D9 SINE Alu 0 120 1 4 835 231 167 0 0 chr6 32845633 32845669 -116671368 - PB1D9 SINE Alu -83 37 2 4 835 767 96 17 0 chr6 32845678 32845793 -116671244 - BC1_Mm scRNA scRNA -35 117 1 4 835 189 0 0 0 chr6 32848015 32848036 -116669001 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 4 835 1071 57 28 0 chr6 32848037 32848178 -116668859 - B1_Mus2 SINE Alu -1 146 2 4 835 614 243 110 28 chr6 32848771 32848953 -116668084 - B3A SINE B2 0 198 2 4 835 348 301 139 18 chr6 32849139 32849305 -116667732 - MER20 DNA MER1_type 0 219 34 4 835 358 316 71 7 chr6 32849386 32849526 -116667511 + LTR82B Low_complexity ERVL 567 715 -115 4 835 1026 88 0 0 chr6 32850071 32850208 -116666829 + B1_Mus2 SINE Alu 2 138 -9 4 835 957 133 14 7 chr6 32850240 32850384 -116666653 + B1_Mus1 SINE Alu 3 147 -1 4 835 447 19 0 0 chr6 32851256 32851308 -116665729 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 835 222 363 102 7 chr6 32852039 32852186 -116664851 + MIR3 SINE MIR 18 178 -30 4 835 234 0 0 0 chr6 32852850 32852876 -116664161 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 4 835 531 0 0 0 chr6 32852876 32852934 -116664103 + (GAAAA)n Simple_repeat Simple_repeat 4 62 0 4 835 547 217 87 0 chr6 32853070 32853185 -116663852 + B3A SINE B2 2 126 -72 4 835 612 167 21 12 chr6 32853299 32853411 -116663626 + B3A SINE B2 1 112 -81 4 835 22 0 0 0 chr6 32853434 32853456 -116663581 + AT_rich Low_complexity Low_complexity 1 22 0 4 835 267 122 0 0 chr6 32854480 32854529 -116662508 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 835 203 319 43 0 chr6 32855613 32855682 -116661355 - L2c LINE L2 0 3387 3316 4 835 208 239 0 43 chr6 32856309 32856379 -116660658 + GA-rich Low_complexity Low_complexity 1 67 0 4 835 643 296 9 0 chr6 32856636 32856859 -116660178 - L1M2 LINE L1 -2229 3914 3690 4 835 396 0 0 0 chr6 32856995 32857039 -116659998 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 835 887 136 84 11 chr6 32857233 32857411 -116659626 - B2_Mm2 SINE B2 -4 191 1 4 835 28 29 0 0 chr6 32858072 32858107 -116658930 + AT_rich Low_complexity Low_complexity 1 35 0 4 835 318 252 122 0 chr6 32859571 32859686 -116657351 - B3A SINE B2 -11 187 59 4 835 186 43 0 0 chr6 32860278 32860301 -116656736 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 835 218 366 48 19 chr6 32860645 32860748 -116656289 + MIRb SINE MIR 48 153 -115 4 835 499 264 61 0 chr6 32861617 32861765 -116655272 - MER2 DNA MER2_type -64 281 125 4 835 915 292 145 2 chr6 32862394 32862717 -116654320 + ORR1D2 LTR MaLR 1 405 -14 4 835 14429 76 4 8 chr6 32862894 32865669 -116651368 - L1Md_F2 LINE L1 -12 6570 3812 4 835 7830 118 9 12 chr6 32865670 32867762 -116649275 - L1Md_F2 LINE L1 -3575 2308 238 4 835 21 36 0 0 chr6 32868497 32868525 -116648512 + AT_rich Low_complexity Low_complexity 1 28 0 4 835 2693 78 6 0 chr6 32868533 32868893 -116648144 - L1_Mus1 LINE L1 -3 6564 6203 4 835 285 247 21 0 chr6 32870144 32870214 -116646823 - PB1D10 SINE Alu -43 84 11 4 835 1122 282 52 73 chr6 32871482 32871865 -116645172 + MTE2a LTR MaLR 5 379 0 4 835 1087 292 122 6 chr6 32871865 32872216 -116644821 + MTE2a-int LTR MaLR 1 392 -1188 4 835 435 297 207 22 chr6 32872240 32872419 -116644618 + MTE2a-int LTR MaLR 555 766 -814 4 835 1942 283 98 2 chr6 32872422 32872932 -116644105 + MTE2a-int LTR MaLR 900 1458 -122 4 835 393 297 188 68 chr6 32872982 32873124 -116643913 + MTE2b LTR MaLR 4 263 -116 4 835 736 179 10 2 chr6 32873124 32873257 -116643780 - B1_Mur4 SINE Alu -9 141 6 4 835 393 297 188 68 chr6 32873257 32873318 -116643719 + MTE2b LTR MaLR 264 379 0 4 835 352 250 29 59 chr6 32873434 32873536 -116643501 + B1F SINE Alu 10 108 -41 4 835 198 0 0 0 chr6 32874826 32874848 -116642189 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 4 835 324 0 0 0 chr6 32875336 32875372 -116641665 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 835 434 321 0 0 chr6 32876223 32876335 -116640702 - B3A SINE B2 -16 182 71 4 835 3582 13 0 0 chr6 32876526 32876922 -116640115 + MTA_Mm LTR MaLR 1 396 0 4 835 261 75 0 0 chr6 32877020 32877060 -116639977 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 835 2451 97 0 20 chr6 32877539 32877897 -116639140 - L1Md_F2 LINE L1 -12 6570 6220 4 835 3183 39 26 3 chr6 32879770 32880157 -116636880 + MTA_Mm LTR MaLR 1 396 0 4 835 210 366 7 63 chr6 32882457 32882600 -116634437 - MER5B DNA MER1_type -4 174 40 4 835 252 0 0 0 chr6 32882732 32882760 -116634277 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 4 835 817 182 11 6 chr6 32882762 32882939 -116634098 + GA-rich Low_complexity Low_complexity 3 180 0 4 835 744 223 0 0 chr6 32882937 32883112 -116633925 + A-rich Low_complexity Low_complexity 1 175 0 4 835 233 348 33 17 chr6 32883950 32884070 -116632967 - MER5A1 DNA MER1_type -3 163 42 5 835 276 322 32 80 chr6 32884280 32884405 -116632632 + L2c LINE L2 3254 3372 -15 5 835 238 310 98 49 chr6 32885727 32885910 -116631127 - Tigger5 DNA MER2_type -2160 246 55 5 835 231 319 83 16 chr6 32887904 32888025 -116629012 - MIRc SINE MIR -118 150 22 5 835 1282 101 27 0 chr6 32888050 32888238 -116628799 + B2_Mm2 SINE B2 2 194 -1 5 835 634 288 13 0 chr6 32888299 32888452 -116628585 + ID_B1 SINE B4 3 157 -67 5 835 212 294 151 11 chr6 32888388 32888481 -116628556 + PB1D10 SINE Alu 12 117 0 5 835 433 239 7 7 chr6 32889530 32889669 -116627368 + (TA)n Simple_repeat Simple_repeat 1 139 0 5 835 236 292 28 0 chr6 32890795 32890867 -116626170 + tRNA-Ala-GCA tRNA tRNA 2 75 0 5 835 25 0 0 0 chr6 32891142 32891167 -116625870 + AT_rich Low_complexity Low_complexity 1 25 0 5 835 727 252 47 24 chr6 32892375 32892586 -116624451 + B3 SINE B2 1 216 0 5 835 784 155 7 27 chr6 32892766 32892912 -116624125 + B1_Mur3 SINE Alu 5 147 -2 5 835 270 185 15 44 chr6 32893466 32893534 -116623503 + (CATA)n Simple_repeat Simple_repeat 2 67 0 5 835 239 154 15 0 chr6 32894124 32894189 -116622848 + CT-rich Low_complexity Low_complexity 2 67 0 5 835 183 114 0 0 chr6 32894189 32894224 -116622813 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 835 1483 167 128 43 chr6 32895760 32895926 -116621111 + RMER17C LTR ERVK 3 167 -243 5 835 468 0 0 0 chr6 32895926 32895978 -116621059 + (CCA)n Simple_repeat Simple_repeat 1 52 0 5 835 1483 167 128 43 chr6 32895978 32896187 -116620850 + RMER17C LTR ERVK 168 410 0 5 835 180 111 0 0 chr6 32896879 32896906 -116620131 + (TATATG)n Simple_repeat Simple_repeat 1 27 0 5 835 526 316 90 21 chr6 32897332 32897565 -116619472 + MARNA DNA Mariner 164 412 -174 5 104 375 181 0 0 chr6 32899057 32899129 -116617908 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 836 25 0 0 0 chr6 32899166 32899191 -116617846 + AT_rich Low_complexity Low_complexity 1 25 0 5 836 200 118 29 0 chr6 32899331 32899365 -116617672 + (TTTTC)n Simple_repeat Simple_repeat 1 35 0 5 836 393 22 0 0 chr6 32899400 32899446 -116617591 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 836 459 0 0 0 chr6 32900256 32900307 -116616730 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 836 313 243 165 0 chr6 32903559 32903662 -116613375 + B1_Mur4 SINE Alu 6 125 -25 5 836 703 330 102 48 chr6 32904029 32904382 -116612655 + MTE2b LTR MaLR 1 372 -7 5 836 212 353 59 0 chr6 32904585 32904670 -116612367 + B3 SINE B2 90 179 -37 5 836 423 252 50 0 chr6 32906063 32906202 -116610835 - L1MA9 LINE L1 0 6312 6167 5 836 409 263 150 17 chr6 32906215 32906455 -116610582 - L1MA9 LINE L1 -199 6113 5842 5 836 180 125 0 0 chr6 32907925 32907957 -116609080 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 836 235 292 0 30 chr6 32907982 32908049 -116608988 - B4 SINE B4 -53 239 175 5 836 182 43 13 127 chr6 32911280 32911359 -116605678 + T-rich Low_complexity Low_complexity 2 71 0 5 836 225 0 0 0 chr6 32912065 32912090 -116604947 + (A)n Simple_repeat Simple_repeat 1 25 0 5 836 270 106 0 0 chr6 32913003 32913050 -116603987 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 836 351 0 0 0 chr6 32914419 32914458 -116602579 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 836 319 246 68 14 chr6 32914949 32915023 -116602014 - B1F SINE Alu -23 126 49 5 836 1193 241 14 43 chr6 32915446 32915724 -116601313 + B4 SINE B4 9 278 -14 5 836 221 333 10 0 chr6 32915737 32915833 -116601204 + (CATATA)n Simple_repeat Simple_repeat 4 100 0 5 836 218 217 31 62 chr6 32916959 32917023 -116600014 + polypurine Low_complexity Low_complexity 4 65 0 5 836 26 88 0 0 chr6 32917706 32917774 -116599263 + AT_rich Low_complexity Low_complexity 1 68 0 5 836 619 296 82 23 chr6 32918673 32918929 -116598108 + B4 SINE B4 4 274 -18 5 836 324 70 0 0 chr6 32918930 32918973 -116598064 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 836 359 287 52 32 chr6 32919268 32919423 -116597614 - L3 LINE CR1 -509 3980 3823 5 836 332 321 87 29 chr6 32920031 32920204 -116596833 + MER5A DNA MER1_type 5 187 -2 5 836 632 13 0 13 chr6 32920959 32921037 -116596000 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 5 836 2492 254 131 12 chr6 32921148 32921960 -116595077 - Lx6 LINE L1 -27 7433 6526 5 836 277 315 58 75 chr6 32921997 32922117 -116594920 + L2b LINE L2 3258 3375 0 5 836 198 322 92 0 chr6 32922785 32922872 -116594165 - L2c LINE L2 -4 3383 3289 5 836 189 74 0 0 chr6 32923081 32923108 -116593929 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 836 1101 117 0 0 chr6 32923108 32923253 -116593784 - B1_Mus1 SINE Alu -2 146 2 5 836 221 196 0 21 chr6 32923566 32923613 -116593424 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 836 882 0 0 0 chr6 32923781 32923879 -116593158 + (CAAGG)n Simple_repeat Simple_repeat 4 101 0 5 836 295 254 68 83 chr6 32924721 32924854 -116592183 + ID_B1 SINE B4 86 216 -8 5 836 300 238 0 0 chr6 32925906 32925986 -116591051 + GA-rich Low_complexity Low_complexity 2 81 0 5 836 21 36 0 0 chr6 32926497 32926525 -116590512 + AT_rich Low_complexity Low_complexity 1 28 0 5 836 938 152 129 53 chr6 32926978 32927187 -116589850 + URR1A DNA MER1_type 1 225 -1 5 836 255 279 181 13 chr6 32928868 32929017 -116588020 + LTR50 LTR ERVL 3 176 -619 5 836 340 289 43 17 chr6 32929317 32929433 -116587604 + MER33 DNA MER1_type 62 180 -144 5 836 245 332 48 72 chr6 32929798 32930048 -116586989 - L1M6 LINE L1 -4889 1607 1364 5 836 267 274 8 89 chr6 32930743 32930867 -116586170 + PB1D10 SINE Alu 4 117 0 5 836 297 302 15 8 chr6 32931844 32931974 -116585063 - L1MA10 LINE L1 -18 6316 6186 5 836 766 221 61 61 chr6 32931998 32932196 -116584841 - B3A SINE B2 0 198 1 5 836 249 258 79 0 chr6 32932221 32932310 -116584727 - L1MB1 LINE L1 -22 6167 6072 5 836 317 325 136 28 chr6 32932710 32932925 -116584112 - MIRc SINE MIR -1 261 36 5 836 1477 53 11 0 chr6 32933244 32933433 -116583604 + B2_Mm1t SINE B2 2 192 -1 5 836 22 0 0 0 chr6 32935493 32935515 -116581522 + GC_rich Low_complexity Low_complexity 1 22 0 5 836 632 331 23 89 chr6 32936900 32937202 -116579835 - B4A SINE B4 -10 282 1 5 836 483 248 102 12 chr6 32937416 32937661 -116579376 - MER33 DNA MER1_type -9 315 49 5 836 398 261 30 80 chr6 32937829 32938029 -116579008 + Lx9 LINE L1 5783 5972 -1672 5 836 377 167 13 0 chr6 32938238 32938316 -116578721 + GA-rich Low_complexity Low_complexity 3 81 0 5 836 1095 238 41 0 chr6 32938355 32938624 -116578413 + Lx9 LINE L1 6383 6662 -982 5 836 1198 264 62 79 chr6 32938631 32939162 -116577875 + Lx9 LINE L1 6845 7366 -278 5 836 522 99 0 0 chr6 32939182 32939273 -116577764 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 836 510 226 9 36 chr6 32939518 32939628 -116577409 - ID_B1 SINE B4 -13 211 105 5 836 31 26 0 0 chr6 32941325 32941363 -116575674 + AT_rich Low_complexity Low_complexity 1 38 0 5 836 509 122 41 57 chr6 32941393 32941515 -116575522 - Lx9 LINE L1 -1 7643 7524 5 836 949 154 138 0 chr6 32941515 32941710 -116575327 + Lx9 LINE L1 7185 7406 -238 5 836 566 182 53 0 chr6 32942368 32942500 -116574537 + Lx9 LINE L1 7499 7637 -7 5 836 211 185 60 30 chr6 32942622 32942689 -116574348 + B3A SINE B2 2 70 -128 5 836 229 316 119 34 chr6 32943042 32943160 -116573877 - MIRm SINE MIR -120 156 29 5 836 342 0 0 0 chr6 32943176 32943214 -116573823 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 836 820 65 0 0 chr6 32943475 32943583 -116573454 - B1_Mm SINE Alu -38 109 2 5 836 243 0 0 0 chr6 32943648 32943675 -116573362 + (A)n Simple_repeat Simple_repeat 1 27 0 5 836 669 337 74 15 chr6 32943870 32944141 -116572896 - B4A SINE B4 -4 288 2 5 836 752 176 88 0 chr6 32945966 32946102 -116570935 + B1_Mur4 SINE Alu 2 149 -1 5 836 247 265 29 0 chr6 32947980 32948048 -116568989 + GA-rich Low_complexity Low_complexity 5 74 0 5 836 230 299 131 93 chr6 32949088 32949195 -116567842 - B1F2 SINE Alu -35 114 4 5 836 234 0 0 0 chr6 32950192 32950218 -116566819 + (T)n Simple_repeat Simple_repeat 1 26 0 5 836 324 123 83 36 chr6 32951202 32951370 -116565667 + (CCTCG)n Simple_repeat Simple_repeat 3 178 0 5 836 29 60 0 0 chr6 32952664 32952714 -116564323 + AT_rich Low_complexity Low_complexity 1 50 0 5 836 1178 76 7 0 chr6 32952820 32952964 -116564073 + B1_Mm SINE Alu 2 146 -1 5 836 250 108 0 84 chr6 32952964 32953035 -116564002 + (CAAT)n Simple_repeat Simple_repeat 4 68 0 5 836 21 57 0 0 chr6 32953802 32953837 -116563200 + AT_rich Low_complexity Low_complexity 1 35 0 5 836 635 266 120 0 chr6 32954837 32955029 -116562008 + Kanga1d DNA Tc2 96 310 -299 5 836 638 252 71 85 chr6 32955095 32955307 -116561730 - MER20 DNA MER1_type -8 211 3 5 836 249 213 271 0 chr6 32955349 32955471 -116561566 + Kanga1d DNA Tc2 443 597 -12 5 836 25 65 0 0 chr6 32956830 32956876 -116560161 + AT_rich Low_complexity Low_complexity 1 46 0 5 836 753 220 123 11 chr6 32958235 32958414 -116558623 + B3 SINE B2 18 216 0 5 836 1154 265 119 53 chr6 32959634 32960336 -116556701 + L1MB7 LINE L1 5170 5907 -277 5 836 307 188 36 36 chr6 32960660 32960743 -116556294 + L1MB7 LINE L1 6047 6129 -55 5 836 244 281 177 40 chr6 32961713 32961939 -116555098 - L1MA7 LINE L1 -163 6128 5872 5 836 3973 18 0 0 chr6 32963344 32963794 -116553243 + L1Md_T LINE L1 5137 5586 -297 5 836 8561 56 0 0 chr6 32963794 32964790 -116552247 + L1Md_T LINE L1 5587 6582 0 5 836 462 263 37 63 chr6 32965111 32965302 -116551735 - RLTR23 LTR ERV1 -1 429 244 5 836 3375 44 18 5 chr6 32965789 32966180 -116550857 - MTA_Mm LTR MaLR 0 396 1 5 836 903 173 0 61 chr6 32966250 32966398 -116550639 - B1_Mur4 SINE Alu -11 139 1 5 836 180 0 0 0 chr6 32966401 32966421 -116550616 + (T)n Simple_repeat Simple_repeat 1 20 0 5 836 26 0 0 0 chr6 32967655 32967681 -116549356 + AT_rich Low_complexity Low_complexity 1 26 0 5 836 287 224 81 12 chr6 32968089 32968175 -116548862 - Charlie1a DNA MER1_type -834 621 530 6 836 192 191 43 0 chr6 32968766 32968813 -116548224 - L2a LINE L2 -267 3159 3111 6 836 199 148 167 0 chr6 32969016 32969070 -116547967 + MER5A DNA MER1_type 2 64 -125 6 836 274 359 29 0 chr6 32969639 32969742 -116547295 + MER117 DNA MER1_type 3 108 -89 6 836 760 273 70 19 chr6 32971377 32971590 -116545447 + ID_B1 SINE B4 1 224 0 6 836 192 40 0 0 chr6 32971658 32971683 -116545354 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 836 180 200 0 0 chr6 32971860 32971905 -116545132 + A-rich Low_complexity Low_complexity 1 45 0 6 836 385 150 49 12 chr6 32971908 32971989 -116545048 + L1Md_A LINE L1 6495 6578 -4 6 836 477 0 0 0 chr6 32971994 32972047 -116544990 + (GAAA)n Simple_repeat Simple_repeat 3 55 0 6 836 389 319 132 5 chr6 32972166 32972355 -116544682 - MER20B DNA MER1_type -433 350 138 6 836 601 263 80 50 chr6 32972535 32972735 -116544302 + B3 SINE B2 6 211 -5 6 836 718 253 104 22 chr6 32975134 32975316 -116541721 + B3 SINE B2 6 202 -14 6 836 180 0 0 0 chr6 32975316 32975336 -116541701 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 6 836 256 267 25 62 chr6 32975385 32975465 -116541572 + PB1 SINE Alu 44 120 -7 6 836 27 81 0 0 chr6 32975481 32975543 -116541494 + AT_rich Low_complexity Low_complexity 1 62 0 6 836 251 140 20 0 chr6 32975716 32975766 -116541271 + (GTTTG)n Simple_repeat Simple_repeat 2 52 0 6 836 573 244 83 15 chr6 32976312 32976445 -116540592 + B1_Mur2 SINE Alu 3 144 -5 6 836 1445 213 139 3 chr6 32978006 32978336 -116538701 - MTE2b LTR MaLR -2 377 3 6 836 305 316 35 49 chr6 32979321 32979464 -116537573 - MLT1A1 LTR MaLR 0 408 268 6 836 236 316 92 0 chr6 32979603 32979701 -116537336 - ORR1E LTR MaLR -249 110 4 6 836 666 272 103 18 chr6 32980465 32980738 -116536299 + Charlie21a DNA MER1_type 179 474 -739 6 836 428 256 52 8 chr6 32980908 32981042 -116535995 + Charlie21a DNA MER1_type 720 859 -354 6 836 308 280 101 69 chr6 32981045 32981233 -116535804 + MER2 DNA MER2_type 55 248 -97 6 836 663 219 20 46 chr6 32981407 32981560 -116535477 - B1_Mur2 SINE Alu 0 149 1 6 836 508 188 26 0 chr6 32983209 32983329 -116533708 - B1_Mus2 SINE Alu -6 143 17 6 836 30 27 0 0 chr6 32983471 32983508 -116533529 + AT_rich Low_complexity Low_complexity 1 37 0 6 836 277 305 0 0 chr6 32985841 32985900 -116531137 + ID4_ SINE ID 25 83 0 6 836 1720 179 137 13 chr6 32986143 32986516 -116530521 + MTD LTR MaLR 1 419 0 6 836 561 123 0 0 chr6 32986602 32986708 -116530329 + (TC)n Simple_repeat Simple_repeat 2 107 0 6 836 211 184 0 0 chr6 32986708 32986746 -116530291 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 836 392 233 120 72 chr6 32987444 32987569 -116529468 - MIRb SINE MIR -66 202 72 6 836 21 82 0 0 chr6 32988097 32988146 -116528891 + AT_rich Low_complexity Low_complexity 1 49 0 6 836 459 0 0 0 chr6 32988379 32988430 -116528607 + (CTG)n Simple_repeat Simple_repeat 2 52 0 6 836 501 296 49 14 chr6 32988569 32988713 -116528324 + B1F1 SINE Alu 1 149 0 6 836 198 0 0 0 chr6 32989059 32989081 -116527956 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 6 836 215 250 0 0 chr6 32989093 32989145 -116527892 + T-rich Low_complexity Low_complexity 1 52 0 6 836 279 0 0 0 chr6 32989152 32989183 -116527854 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 836 1037 124 46 0 chr6 32989184 32989337 -116527700 - B2_Mm2 SINE B2 -34 161 2 6 836 2288 163 68 3 chr6 32989697 32990067 -116526970 + ORR1B1 LTR MaLR 1 394 0 6 836 211 326 70 42 chr6 32990511 32990664 -116526373 - L2b LINE L2 -3 3372 3238 6 836 195 100 0 0 chr6 32991182 32991212 -116525825 + (GGGTG)n Simple_repeat Simple_repeat 4 33 0 6 836 342 0 0 0 chr6 32991842 32991880 -116525157 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 836 1767 188 39 19 chr6 32993505 32993868 -116523169 - ORR1D1 LTR MaLR 0 374 5 6 836 280 286 104 12 chr6 32993995 32994158 -116522879 - Charlie26a DNA MER1_type -26 299 122 6 836 698 157 8 17 chr6 32995562 32995679 -116521358 - RMER1C Other Other -1046 296 181 6 836 605 69 11 0 chr6 32995681 32995768 -116521269 + (GAGAA)n Simple_repeat Simple_repeat 4 91 0 6 836 213 196 0 0 chr6 32995820 32995871 -116521166 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 836 22 0 0 0 chr6 32995995 32996017 -116521020 + AT_rich Low_complexity Low_complexity 1 22 0 6 836 424 215 88 100 chr6 32996494 32996635 -116520402 + RSINE1 SINE B4 8 147 -18 6 836 930 122 0 0 chr6 32996635 32996815 -116520222 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 836 424 215 88 100 chr6 32996815 32996833 -116520204 + RSINE1 SINE B4 148 165 0 6 836 370 267 90 28 chr6 32997073 32997250 -116519787 + MIR SINE MIR 30 217 -45 6 836 2852 10 0 0 chr6 32997286 32997587 -116519450 - L1Md_A LINE L1 0 6582 6282 6 836 1195 61 0 20 chr6 32999059 32999209 -116517828 + B1_Mus1 SINE Alu 2 148 0 6 836 311 23 47 0 chr6 32999718 32999761 -116517276 + (TATG)n Simple_repeat Simple_repeat 4 48 0 6 836 425 138 0 12 chr6 32999789 32999870 -116517167 + (TC)n Simple_repeat Simple_repeat 1 80 0 6 836 378 57 0 0 chr6 33000478 33000531 -116516506 + (TGAG)n Simple_repeat Simple_repeat 3 55 0 1 836 381 282 40 0 chr6 33000633 33000757 -116516280 - L2 LINE L2 -565 2854 2726 2 836 730 263 38 79 chr6 33000779 33001036 -116516001 + L1MB7 LINE L1 5663 5918 -266 3 836 394 245 112 0 chr6 33001036 33001134 -116515903 - PB1D10 SINE Alu -8 109 1 4 836 730 273 45 78 chr6 33001134 33001273 -116515764 + L1MB7 LINE L1 5919 6051 -113 3 836 326 220 54 11 chr6 33001419 33001511 -116515526 + PB1D10 SINE Alu 2 97 -20 5 836 484 243 18 0 chr6 33003400 33003511 -116513526 - ID_B1 SINE B4 -35 189 77 6 836 364 253 0 12 chr6 33003864 33003948 -116513089 + BC1_Mm scRNA scRNA 4 86 -66 7 836 1117 126 179 0 chr6 33004523 33004713 -116512324 - URR1B DNA MER1_type 0 225 2 8 836 425 34 0 17 chr6 33007563 33007623 -116509414 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 836 190 200 150 0 chr6 33007709 33007749 -116509288 - MIRb SINE MIR -199 69 24 1 836 372 222 0 0 chr6 33007834 33007906 -116509131 + ID4_ SINE ID 11 82 -1 1 836 180 278 186 25 chr6 33007938 33008056 -116508981 - MIRb SINE MIR -58 210 74 1 836 216 0 0 0 chr6 33008176 33008200 -116508837 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 1 836 251 267 0 43 chr6 33008753 33008847 -116508190 + T-rich Low_complexity Low_complexity 1 90 0 1 836 242 73 0 24 chr6 33011102 33011144 -116505893 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1 836 241 318 0 0 chr6 33011287 33011350 -116505687 + G-rich Low_complexity Low_complexity 3 65 0 1 836 1239 34 0 0 chr6 33012043 33012189 -116504848 + B1_Mus2 SINE Alu 2 147 0 1 836 713 216 51 25 chr6 33012586 33012823 -116504214 + L1M4 LINE L1 4160 4402 -1744 1 836 524 262 6 0 chr6 33012820 33012958 -116504079 + L1MB7 LINE L1 5734 5879 -304 1 836 582 256 97 6 chr6 33012978 33013131 -116503906 + B3 SINE B2 1 169 -47 2 836 297 0 0 0 chr6 33013131 33013164 -116503873 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 2 836 582 247 87 120 chr6 33013164 33013194 -116503843 + B3 SINE B2 149 180 -36 2 836 627 267 38 76 chr6 33013206 33013496 -116503541 + L1MB7 LINE L1 5878 6165 -9 1 836 237 311 95 0 chr6 33013562 33013636 -116503401 + ID4 SINE ID 1 81 -2 2 836 486 270 177 18 chr6 33013645 33013871 -116503166 + B4A SINE B4 25 286 -6 2 836 234 0 0 0 chr6 33013909 33013935 -116503102 + (CTG)n Simple_repeat Simple_repeat 1 26 0 2 836 905 260 101 42 chr6 33013981 33014318 -116502719 + Lx8 LINE L1 7113 7469 -4 2 836 1222 41 0 7 chr6 33014450 33014597 -116502440 + B1_Mm SINE Alu 2 147 0 2 836 1055 114 6 0 chr6 33014597 33014763 -116502274 + (GGA)n Simple_repeat Simple_repeat 2 168 0 2 836 612 324 104 44 chr6 33015021 33015454 -116501583 + MT2A LTR ERVL 1 459 -74 2 836 1175 166 98 0 chr6 33015497 33015702 -116501335 + URR1A DNA MER1_type 2 226 0 2 836 362 274 6 16 chr6 33015828 33016010 -116501027 + GA-rich Low_complexity Low_complexity 1 180 0 3 836 6559 96 19 39 chr6 33018307 33018998 -116498039 + Lx3_Mus LINE L1 6013 6686 -323 3 836 3165 24 50 3 chr6 33018998 33019376 -116497661 + MTA_Mm LTR MaLR 1 396 0 3 836 6559 96 19 39 chr6 33019376 33019702 -116497335 + Lx3_Mus LINE L1 6687 7009 0 3 836 540 322 41 7 chr6 33019773 33019920 -116497117 - B3A SINE B2 -29 169 18 3 836 209 318 15 0 chr6 33019939 33020005 -116497032 - MIRm SINE MIR -114 162 96 3 836 1724 221 49 43 chr6 33020206 33020674 -116496363 + RMER19C LTR ERVK 138 608 -3 3 836 393 22 0 0 chr6 33020829 33020875 -116496162 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 836 970 176 44 48 chr6 33020913 33021140 -116495897 - URR1A DNA MER1_type 0 226 1 3 836 569 264 18 36 chr6 33021499 33021664 -116495373 + RSINE1 SINE B4 4 165 0 3 836 4071 155 80 15 chr6 33022686 33023584 -116493453 + RLTR25B LTR ERVK 1 1103 0 3 836 567 0 0 0 chr6 33023599 33023662 -116493375 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 836 639 218 34 13 chr6 33025046 33025195 -116491842 - RSINE1 SINE B4 -9 156 5 4 836 252 306 63 16 chr6 33025197 33025323 -116491714 - L1M5 LINE L1 -418 5706 5575 4 836 298 284 93 20 chr6 33025367 33025518 -116491519 - L1M5 LINE L1 -698 5496 5335 4 836 265 213 49 0 chr6 33026258 33026319 -116490718 + L2c LINE L2 3276 3339 -48 4 836 509 252 68 8 chr6 33026366 33026498 -116490539 + ID_B1 SINE B4 84 223 -1 4 836 253 241 0 0 chr6 33027112 33027166 -116489871 - MLT2C1 LTR ERVL -57 506 453 4 836 335 250 0 0 chr6 33027214 33027282 -116489755 - ID4 SINE ID -13 70 3 4 836 291 271 113 10 chr6 33027300 33027397 -116489640 - PB1 SINE Alu -8 119 13 4 836 337 340 66 30 chr6 33027410 33027607 -116489430 - MLT2C1 LTR ERVL -160 237 34 4 836 230 29 59 0 chr6 33027871 33027905 -116489132 + (CCCCCT)n Simple_repeat Simple_repeat 4 39 0 4 836 292 225 73 73 chr6 33029120 33029136 -116487901 + B4A SINE B4 77 92 -200 5 836 525 239 0 8 chr6 33029136 33029254 -116487783 + PB1D10 SINE Alu 1 117 0 5 836 228 260 27 71 chr6 33029333 33029445 -116487592 + MLT1G3 LTR MaLR 111 217 -362 5 836 252 243 143 0 chr6 33029446 33029516 -116487521 + ID4_ SINE ID 2 81 -2 5 836 289 224 0 30 chr6 33029516 33029617 -116487420 + GA-rich Low_complexity Low_complexity 1 98 0 5 836 242 345 122 0 chr6 33029628 33029776 -116487261 + MLT1G3 LTR MaLR 241 406 -189 5 837 283 270 10 82 chr6 33030353 33030450 -116486587 - MLT1G1 LTR MaLR -288 291 202 5 837 351 0 0 0 chr6 33030456 33030495 -116486542 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 837 261 309 0 0 chr6 33030512 33030580 -116486457 - ID2 SINE ID -13 70 3 5 837 461 232 5 5 chr6 33030582 33030801 -116486236 + CT-rich Low_complexity Low_complexity 1 219 0 5 837 441 276 73 0 chr6 33030801 33030924 -116486113 - B1F SINE Alu -17 132 1 5 837 2992 101 33 37 chr6 33031068 33031552 -116485485 - RLTR45 LTR ERVK 0 482 1 6 837 746 266 55 5 chr6 33031677 33031877 -116485160 + B3 SINE B2 1 210 -6 6 837 1081 115 7 0 chr6 33031906 33032054 -116484983 - B1_Mur4 SINE Alu 0 150 2 6 837 1108 103 6 6 chr6 33032054 33032229 -116484808 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 6 837 264 167 0 0 chr6 33032236 33032284 -116484753 + GA-rich Low_complexity Low_complexity 1 48 0 6 837 969 228 190 34 chr6 33033025 33033352 -116483685 - MTEa LTR MaLR -1 378 1 6 837 193 274 42 40 chr6 33033838 33033972 -116483065 - MER5B DNA MER1_type -19 170 25 6 837 226 162 184 26 chr6 33034868 33035020 -116482017 + (CCCCAG)n Simple_repeat Simple_repeat 3 178 0 6 837 372 329 72 7 chr6 33036254 33036407 -116480630 + LTR16A1 LTR ERVL 229 391 -65 6 837 1076 213 14 9 chr6 33036805 33037018 -116480019 + B3 SINE B2 1 214 -2 6 837 356 318 70 22 chr6 33037988 33038216 -116478821 - HAL1 LINE L1 -703 1804 1566 7 837 23 0 0 0 chr6 33038403 33038426 -116478611 + AT_rich Low_complexity Low_complexity 1 23 0 7 837 293 281 11 33 chr6 33038495 33038587 -116478450 - B3A SINE B2 -107 91 2 7 837 453 248 30 0 chr6 33038646 33038747 -116478290 - U6 snRNA snRNA -1 106 3 7 837 333 0 0 0 chr6 33038964 33039001 -116478036 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 837 526 209 10 64 chr6 33039246 33039378 -116477659 + ID_B1 SINE B4 2 128 -164 7 837 320 94 19 0 chr6 33039378 33039431 -116477606 + (CATA)n Simple_repeat Simple_repeat 1 54 0 7 837 322 287 52 71 chr6 33039431 33039452 -116477585 + B4A SINE B4 129 152 -140 7 837 1231 277 67 7 chr6 33039485 33039903 -116477134 + L1MB5 LINE L1 5720 6162 -12 7 837 1991 121 11 72 chr6 33040449 33040797 -116476240 + ORR1A2 LTR MaLR 1 327 0 7 837 442 233 82 8 chr6 33040832 33040966 -116476071 - MLT1B LTR MaLR -13 377 234 7 837 1366 61 5 27 chr6 33040967 33041152 -116475885 - L1_Mus2 LINE L1 -204 6362 6182 8 837 798 52 0 42 chr6 33041152 33041272 -116475765 + L1_Mus2 LINE L1 6452 6566 0 8 837 1133 189 60 23 chr6 33041272 33041355 -116475682 - L1_Mus2 LINE L1 -455 6181 6081 8 837 2006 158 34 82 chr6 33041542 33041956 -116475081 - ORR1B1 LTR MaLR 0 394 1 8 837 240 291 164 32 chr6 33041957 33042052 -116474985 + L2 LINE L2 2832 2943 -476 8 837 204 40 0 0 chr6 33042052 33042077 -116474960 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 8 837 240 291 164 32 chr6 33042077 33042201 -116474836 + L2 LINE L2 2944 3080 -339 8 837 1673 172 96 21 chr6 33042207 33042593 -116474444 - MTD LTR MaLR -3 416 2 8 837 1208 240 106 45 chr6 33042626 33043109 -116473928 - RMER4B LTR ERVK -12 599 15 8 837 753 286 23 0 chr6 33043283 33043503 -116473534 - B4 SINE B4 -67 225 1 8 837 204 97 0 0 chr6 33043503 33043534 -116473503 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 8 837 744 153 119 22 chr6 33043547 33043681 -116473356 + B1_Mur2 SINE Alu 1 147 -2 8 837 570 266 82 67 chr6 33043796 33044066 -116472971 - B4A SINE B4 -18 274 1 8 837 487 321 0 14 chr6 33045189 33045328 -116471709 - ID_B1 SINE B4 -7 217 81 9 837 468 282 0 64 chr6 33045710 33045741 -116471296 + ORR1B1 LTR MaLR 12 42 -337 9 837 1497 133 4 9 chr6 33045741 33045968 -116471069 + URR1A DNA MER1_type 1 226 0 9 837 468 282 0 64 chr6 33045968 33046061 -116470976 + ORR1B1 LTR MaLR 43 128 -251 9 837 674 98 15 96 chr6 33046091 33046227 -116470810 + ORR1B1 LTR MaLR 262 386 -8 9 837 402 326 26 58 chr6 33046473 33046629 -116470408 + RSINE1 SINE B4 3 153 -12 9 837 462 49 0 0 chr6 33046631 33046692 -116470345 + (CA)n Simple_repeat Simple_repeat 1 61 0 9 837 360 306 32 40 chr6 33047135 33047261 -116469776 + B1F SINE Alu 24 148 -1 9 837 710 206 76 0 chr6 33047267 33047398 -116469639 + B1_Mur4 SINE Alu 3 143 -7 9 837 869 98 0 15 chr6 33047436 33047571 -116469466 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 9 837 1752 132 196 27 chr6 33047592 33047928 -116469109 - ORR1B1 LTR MaLR -1 393 1 9 837 428 81 14 0 chr6 33048701 33048775 -116468262 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 9 837 377 198 10 0 chr6 33049701 33049797 -116467240 + C-rich Low_complexity Low_complexity 1 97 0 1 837 263 337 0 11 chr6 33049825 33049918 -116467119 + MLT1F2 LTR MaLR 193 284 -276 1 837 216 200 0 0 chr6 33049936 33049981 -116467056 + GA-rich Low_complexity Low_complexity 2 46 0 1 837 342 0 0 0 chr6 33050061 33050099 -116466938 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 837 263 346 19 19 chr6 33050277 33050383 -116466654 + MLT1F2 LTR MaLR 292 397 -163 1 837 806 242 6 6 chr6 33051343 33051505 -116465532 + RSINE1 SINE B4 4 165 0 1 837 531 306 76 0 chr6 33051598 33051755 -116465282 + B3A SINE B2 3 171 -27 1 837 21 36 0 0 chr6 33051796 33051824 -116465213 + AT_rich Low_complexity Low_complexity 1 28 0 1 837 228 354 144 11 chr6 33051895 33052075 -116464962 - MIRb SINE MIR -28 240 37 1 837 7569 66 6 2 chr6 33052736 33053693 -116463344 + L1Md_F2 LINE L1 5609 6569 -13 1 837 223 328 15 0 chr6 33054536 33054603 -116462434 + B1F SINE Alu 3 70 -79 1 837 393 325 17 0 chr6 33055790 33055907 -116461130 - PB1D7 SINE Alu -1 119 1 1 837 376 277 29 21 chr6 33056171 33056311 -116460726 - L1M5 LINE L1 -2341 3805 3665 1 837 434 248 69 0 chr6 33056452 33056553 -116460484 + PB1D10 SINE Alu 5 112 -5 1 837 831 306 137 26 chr6 33056776 33057530 -116459507 + L1MEc LINE L1 151 987 -5413 1 837 310 61 76 0 chr6 33057550 33057616 -116459421 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 837 638 236 45 55 chr6 33057620 33057658 -116459379 - B3A SINE B2 -16 200 167 1 837 1260 3 22 28 chr6 33057658 33057975 -116459062 + (TG)n Simple_repeat Simple_repeat 1 315 0 1 837 638 275 34 28 chr6 33057975 33058137 -116458900 - B3A SINE B2 -32 166 2 1 837 600 216 118 36 chr6 33058144 33058423 -116458614 + L1MEc LINE L1 977 1278 -5122 1 837 1537 229 37 6 chr6 33058760 33059112 -116457925 + L1MB7 LINE L1 5803 6165 -19 1 837 1065 247 74 71 chr6 33059487 33059573 -116457464 + RMER1B Other Other 73 158 -908 1 837 1887 210 8 196 chr6 33059573 33060326 -116456711 - RMER19C LTR ERVK 0 611 1 1 837 1065 254 73 64 chr6 33060326 33060662 -116456375 + RMER1B Other Other 104 426 -640 1 837 2106 156 22 22 chr6 33060655 33061016 -116456021 + RMER1B Other Other 701 1061 -5 1 837 440 276 32 76 chr6 33061090 33061247 -116455790 - B4 SINE B4 0 292 143 1 837 242 350 15 54 chr6 33061338 33061543 -116455494 + RMER4A LTR ERVK 8 204 -262 1 837 444 216 10 0 chr6 33061783 33061880 -116455157 - BC1_Mm scRNA scRNA -54 98 1 1 837 774 327 40 45 chr6 33062640 33063168 -116453869 + ERVL-B4-int LTR ERVL 2120 2644 -3070 1 837 611 274 77 83 chr6 33063275 33063286 -116453751 + MTD LTR MaLR 6 15 -364 1 837 222 37 0 0 chr6 33063286 33063313 -116453724 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 837 1472 195 41 33 chr6 33063313 33063664 -116453373 + MTD LTR MaLR 16 406 -13 1 837 465 277 73 47 chr6 33063765 33063996 -116453041 - L1MC5 LINE L1 -9 7952 7721 1 837 1592 207 72 33 chr6 33063996 33064356 -116452681 - ORR1D1 LTR MaLR 0 374 1 1 837 465 277 73 47 chr6 33064356 33064465 -116452572 - L1MC5 LINE L1 -241 7720 7603 1 837 1218 56 0 12 chr6 33064534 33064723 -116452314 - L1Md_F2 LINE L1 0 6582 6404 1 837 596 310 0 65 chr6 33064751 33064906 -116452131 + RSINE1 SINE B4 10 154 -11 1 837 243 204 0 0 chr6 33064928 33064982 -116452055 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 837 899 124 83 0 chr6 33065853 33065998 -116451039 + B2_Mm2 SINE B2 1 157 -38 1 837 2310 26 0 0 chr6 33065998 33066263 -116450774 + L1Md_F3 LINE L1 5849 6113 -471 1 837 608 204 229 17 chr6 33066264 33066439 -116450598 - URR1A DNA MER1_type -12 214 3 1 837 526 281 66 25 chr6 33067552 33067749 -116449288 + MER3 DNA MER1_type 5 209 0 1 837 234 174 0 0 chr6 33067884 33067930 -116449107 + A-rich Low_complexity Low_complexity 2 47 0 1 837 195 336 46 46 chr6 33068243 33068374 -116448663 + MIRb SINE MIR 22 152 -116 1 837 858 70 0 0 chr6 33069219 33069333 -116447704 + (TC)n Simple_repeat Simple_repeat 2 115 0 1 837 706 301 5 5 chr6 33069411 33069595 -116447442 + ORR1E LTR MaLR 8 191 -168 1 837 21 36 0 0 chr6 33070183 33070211 -116446826 + AT_rich Low_complexity Low_complexity 1 28 0 1 837 1456 270 20 3 chr6 33070625 33070971 -116446066 - MTEa LTR MaLR 0 379 28 1 837 449 297 188 6 chr6 33072987 33073163 -116443874 + LTR16A LTR ERVL 3 210 -241 1 837 555 298 150 59 chr6 33073507 33073814 -116443223 - MTEa LTR MaLR -18 361 27 1 837 3382 43 2 5 chr6 33075149 33075546 -116441491 - MTA_Mm LTR MaLR 0 396 1 1 837 337 286 26 32 chr6 33075858 33076090 -116440947 + CT-rich Low_complexity Low_complexity 1 230 0 1 837 189 0 0 0 chr6 33077064 33077085 -116439952 + (CCA)n Simple_repeat Simple_repeat 1 21 0 1 837 276 296 152 11 chr6 33077422 33077613 -116439424 - MER58B DNA MER1_type -6 335 118 1 837 351 0 0 0 chr6 33078176 33078215 -116438822 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 837 22 0 0 0 chr6 33080149 33080171 -116436866 + AT_rich Low_complexity Low_complexity 1 22 0 1 837 995 248 202 6 chr6 33080682 33080999 -116436038 - MTEb LTR MaLR 0 379 1 1 837 289 384 32 0 chr6 33081031 33081221 -116435816 - LTR33 LTR ERVL -23 492 297 1 837 432 267 0 0 chr6 33081233 33081413 -116435624 + GA-rich Low_complexity Low_complexity 1 180 0 1 837 2105 179 106 20 chr6 33081850 33082386 -116434651 + RMER12 LTR ERVK 1 582 -740 1 837 8212 59 5 2 chr6 33082386 33083797 -116433240 + L1_Mus1 LINE L1 5150 6566 -1 1 837 831 149 5 42 chr6 33083854 33084043 -116432994 + RMER12 LTR ERVK 567 748 -574 1 837 474 149 0 0 chr6 33084076 33084163 -116432874 + (TCCA)n Simple_repeat Simple_repeat 1 87 0 1 837 982 231 133 51 chr6 33084163 33084605 -116432432 + RMER12 LTR ERVK 758 1187 -135 1 837 219 220 0 0 chr6 33085049 33085099 -116431938 + (CTGGGG)n Simple_repeat Simple_repeat 5 54 0 1 837 455 197 38 160 chr6 33085226 33085426 -116431611 - MTEa LTR MaLR -2 377 176 1 837 993 278 8 28 chr6 33085443 33085739 -116431298 - MTEa LTR MaLR -89 290 1 1 837 1591 195 41 3 chr6 33085761 33086100 -116430937 - L1MC2 LINE L1 -482 5862 5511 1 837 441 0 0 0 chr6 33086130 33086179 -116430858 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 837 703 224 105 6 chr6 33088080 33088242 -116428795 - URR1B DNA MER1_type -47 178 1 1 837 256 329 67 0 chr6 33088546 33088710 -116428327 + Charlie16a DNA MER1_type 64 238 -104 1 837 584 318 45 38 chr6 33088896 33089184 -116427853 + B4A SINE B4 1 290 -2 1 837 270 0 0 0 chr6 33089189 33089219 -116427818 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 837 252 184 0 0 chr6 33089224 33089273 -116427764 + MER3 DNA MER1_type 146 194 -15 1 837 609 40 0 0 chr6 33089430 33089506 -116427531 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 837 684 284 83 32 chr6 33089536 33089813 -116427224 - B4 SINE B4 0 292 2 1 837 317 294 9 29 chr6 33089840 33089945 -116427092 - PB1D10 SINE Alu -8 109 7 1 837 2291 152 65 5 chr6 33090033 33090430 -116426607 + MTC LTR MaLR 1 421 0 1 837 266 194 16 0 chr6 33090603 33090665 -116426372 + GA-rich Low_complexity Low_complexity 2 64 0 1 837 433 286 10 10 chr6 33091523 33091642 -116425395 - PB1D10 SINE Alu -1 116 1 1 837 2249 195 70 17 chr6 33092208 33092656 -116424381 + RLTR20B2 LTR ERVK 1 452 -108 1 837 414 0 0 0 chr6 33092656 33092702 -116424335 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 837 243 0 0 0 chr6 33092702 33092728 -116424309 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 837 2249 195 70 17 chr6 33092728 33092810 -116424227 + RLTR20B2 LTR ERVK 453 558 -2 1 837 1817 190 42 8 chr6 33093618 33093973 -116423064 - ORR1B2 LTR MaLR 0 367 1 1 837 878 277 9 18 chr6 33094027 33094251 -116422786 + B4A SINE B4 2 223 -69 1 837 216 0 0 0 chr6 33094325 33094349 -116422688 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 837 524 15 15 0 chr6 33094349 33094413 -116422624 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 837 2063 124 12 64 chr6 33094472 33094816 -116422221 + ORR1A3 LTR MaLR 1 326 0 1 837 212 163 0 0 chr6 33095223 33095266 -116421771 + A-rich Low_complexity Low_complexity 1 43 0 1 837 282 344 38 38 chr6 33095266 33095279 -116421758 + B1F SINE Alu 15 143 -2 1 837 283 381 9 26 chr6 33095279 33095395 -116421642 + ID_B1 SINE B4 105 218 -6 1 837 339 257 0 0 chr6 33095399 33095469 -116421568 + ID4_ SINE ID 2 71 -12 1 837 355 242 40 20 chr6 33095567 33095668 -116421369 - RSINE1 SINE B4 -62 103 1 1 837 204 259 198 12 chr6 33096380 33096466 -116420571 + MIRc SINE MIR 35 136 -132 1 837 459 252 89 0 chr6 33096509 33096632 -116420405 - B1F SINE Alu 0 149 16 1 837 191 36 36 0 chr6 33097041 33097069 -116419968 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 837 3162 48 0 0 chr6 33097264 33097640 -116419397 + L1Md_F2 LINE L1 6135 6510 -72 1 837 26059 77 11 11 chr6 33097653 33101919 -116415118 - L1Md_F LINE L1 -1216 4667 400 1 837 22 0 0 0 chr6 33101928 33101950 -116415087 + AT_rich Low_complexity Low_complexity 1 22 0 1 837 203 0 37 0 chr6 33102006 33102033 -116415004 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 837 517 208 146 0 chr6 33102059 33102189 -116414848 - B1_Mur4 SINE Alu 0 150 2 1 837 4501 4 0 0 chr6 33102636 33103124 -116413913 - L1Md_A LINE L1 0 6582 6095 1 837 340 285 8 75 chr6 33103878 33104011 -116413026 + B1_Mur1 SINE Alu 2 125 -24 1 837 181 286 32 0 chr6 33104662 33104725 -116412312 + MIRc SINE MIR 93 157 -111 1 837 235 307 204 10 chr6 33104719 33104920 -116412117 - MIR SINE MIR 0 262 23 1 837 772 264 53 53 chr6 33105282 33105586 -116411451 + MTEb LTR MaLR 76 379 0 1 837 389 235 0 0 chr6 33105770 33105863 -116411174 + ID4 SINE ID 6 98 -54 1 837 331 260 31 0 chr6 33106092 33106188 -116410849 - RSINE1 SINE B4 -55 110 12 1 837 612 291 51 81 chr6 33106195 33106491 -116410546 + ORR1E LTR MaLR 63 349 -10 2 837 1269 260 92 28 chr6 33106553 33106967 -116410070 + L1MB4 LINE L1 5650 6090 -90 2 837 2154 144 22 100 chr6 33106967 33107377 -116409660 - ORR1C1 LTR MaLR 0 378 1 2 837 1269 260 92 28 chr6 33107377 33107461 -116409576 + L1MB4 LINE L1 6091 6179 -1 2 837 192 97 0 0 chr6 33107849 33107880 -116409157 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 837 796 250 92 0 chr6 33107929 33108125 -116408912 - B3 SINE B2 -2 214 1 2 837 2223 136 45 21 chr6 33108500 33108875 -116408162 - ORR1C2 LTR MaLR 0 384 1 2 837 5419 194 66 58 chr6 33110531 33110583 -116406454 - Lx7 LINE L1 0 7696 7651 2 837 2611 173 149 13 chr6 33110583 33111121 -116405916 - RMER19C LTR ERVK 0 611 1 2 837 5419 194 66 58 chr6 33111121 33112338 -116404699 - Lx7 LINE L1 -46 7650 6417 2 837 625 242 27 33 chr6 33112882 33113066 -116403971 + B2_Mm2 SINE B2 4 186 -9 2 837 818 140 7 20 chr6 33114023 33114176 -116402861 + Lx9 LINE L1 7486 7636 -8 2 837 396 0 0 0 chr6 33114454 33114498 -116402539 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 837 208 322 57 16 chr6 33117067 33117190 -116399847 - MIRb SINE MIR -9 259 132 2 837 700 282 170 21 chr6 33117330 33117660 -116399377 + MTEa LTR MaLR 1 379 0 2 837 1024 275 107 87 chr6 33117740 33117952 -116399085 + L1MB4 LINE L1 5512 5729 -451 2 837 962 234 78 0 chr6 33117952 33118144 -116398893 + B3 SINE B2 3 209 -7 2 837 1024 275 107 87 chr6 33118144 33118587 -116398450 + L1MB4 LINE L1 5730 6180 0 2 837 270 125 0 0 chr6 33118595 33118643 -116398394 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 837 1148 181 15 5 chr6 33118926 33119131 -116397906 + RLTR20B3 LTR ERVK 371 577 0 2 837 1456 240 51 38 chr6 33119412 33119784 -116397253 + MTE2b LTR MaLR 3 379 0 2 837 237 98 0 0 chr6 33120239 33120280 -116396757 + (A)n Simple_repeat Simple_repeat 1 41 0 2 837 309 26 0 0 chr6 33121422 33121460 -116395577 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 837 258 156 0 0 chr6 33121641 33121686 -116395351 + GA-rich Low_complexity Low_complexity 1 45 0 2 837 524 200 6 0 chr6 33121694 33121859 -116395178 + (TG)n Simple_repeat Simple_repeat 1 166 0 2 837 301 137 20 0 chr6 33121859 33121910 -116395127 - HAL1-3A_ME LINE L1 -831 2027 1976 2 837 745 295 24 51 chr6 33123013 33123306 -116393731 + ORR1E LTR MaLR 3 287 -72 2 837 441 0 0 0 chr6 33124343 33124392 -116392645 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 2 837 344 168 15 54 chr6 33124628 33124710 -116392327 + L1M3 LINE L1 2693 2775 -3368 2 837 759 243 94 17 chr6 33124710 33124847 -116392190 + B3A SINE B2 1 154 -44 2 837 513 0 0 0 chr6 33124847 33124904 -116392133 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 837 333 0 0 0 chr6 33124904 33124940 -116392097 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 837 759 243 94 17 chr6 33124940 33124981 -116392056 + B3A SINE B2 155 193 -5 2 837 252 273 49 106 chr6 33124981 33125144 -116391893 + L1M3 LINE L1 2776 2924 -3219 2 837 973 199 184 37 chr6 33125741 33126048 -116390989 + ORR1D1 LTR MaLR 1 366 -8 2 837 370 264 102 19 chr6 33126626 33126734 -116390303 + RSINE1 SINE B4 3 119 -46 2 837 26364 89 15 6 chr6 33127052 33131425 -116385612 - L1_Mus1 LINE L1 -1 6566 2151 2 837 4843 71 2 13 chr6 33131425 33132035 -116385002 - L1Md_F2 LINE L1 0 6582 5980 2 837 18454 189 35 142 chr6 33132035 33134726 -116382311 - L1_Mus1 LINE L1 -3658 2222 280 2 837 382 219 127 61 chr6 33134802 33134948 -116382089 + Charlie5 DNA MER1_type 2420 2583 -41 2 837 378 0 0 0 chr6 33134948 33134990 -116382047 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 837 382 219 127 61 chr6 33134990 33135008 -116382029 + Charlie5 DNA MER1_type 2584 2595 -29 2 837 258 0 23 45 chr6 33135660 33135704 -116381333 + (TATG)n Simple_repeat Simple_repeat 1 43 0 2 837 318 67 0 0 chr6 33135768 33135813 -116381224 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 2 837 777 267 12 6 chr6 33135823 33135985 -116381052 - RSINE1 SINE B4 0 165 3 2 837 225 65 0 0 chr6 33136083 33136114 -116380923 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 837 331 341 77 12 chr6 33136594 33136763 -116380274 + L4 LINE RTE 612 791 -1238 2 837 216 0 0 0 chr6 33136815 33136839 -116380198 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 2 837 576 312 18 24 chr6 33136839 33137003 -116380034 - RSINE1 SINE B4 0 165 3 2 837 628 162 65 22 chr6 33137008 33137147 -116379890 - RMER1C Other Other 0 1342 1198 2 837 189 94 0 0 chr6 33137147 33137179 -116379858 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 2 837 1411 169 46 18 chr6 33137180 33137464 -116379573 - RMER1C Other Other -119 1223 932 2 837 548 188 54 0 chr6 33138557 33138669 -116378368 - RSINE1 SINE B4 -23 142 25 2 837 471 141 0 0 chr6 33138676 33138754 -116378283 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 837 783 342 24 31 chr6 33138781 33139068 -116377969 - B4 SINE B4 0 292 8 2 837 971 268 5 40 chr6 33139114 33139336 -116377701 - B3 SINE B2 0 216 3 2 837 248 323 9 86 chr6 33140045 33140150 -116376887 + Charlie4z DNA MER1_type 42 138 -29 2 837 701 326 106 8 chr6 33141547 33141782 -116375255 + B4 SINE B4 35 292 0 2 837 207 343 73 9 chr6 33142088 33142197 -116374840 + L2 LINE L2 1894 2009 -1410 2 837 277 281 12 17 chr6 33142219 33142324 -116374713 - L1MEg LINE L1 -5180 1045 949 2 837 27 49 0 0 chr6 33142688 33142729 -116374308 + AT_rich Low_complexity Low_complexity 1 41 0 2 837 429 103 0 0 chr6 33142729 33142797 -116374240 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 837 645 241 51 0 chr6 33142800 33142937 -116374100 - B3A SINE B2 -53 145 2 2 837 287 315 63 0 chr6 33142985 33143112 -116373925 - L1ME1 LINE L1 -297 5882 5748 2 837 4003 217 96 34 chr6 33143089 33144323 -116372714 - RMER1A Other Other 0 1030 36 2 837 522 31 0 0 chr6 33144504 33144568 -116372469 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 837 309 26 0 0 chr6 33144775 33144813 -116372224 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 837 306 73 0 0 chr6 33144863 33144904 -116372133 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 837 597 264 146 60 chr6 33145017 33145387 -116371650 - L1ME1 LINE L1 -515 5664 5263 2 837 345 47 0 0 chr6 33145396 33145439 -116371598 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 837 620 251 34 20 chr6 33145443 33145593 -116371444 - RSINE1 SINE B4 -11 154 2 2 837 736 294 96 8 chr6 33145773 33146126 -116370911 - L1MC LINE L1 -1040 5106 4723 2 837 1296 181 0 18 chr6 33146169 33146388 -116370649 - B3 SINE B2 -1 215 1 2 837 465 148 0 0 chr6 33146510 33146591 -116370446 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 2 837 488 165 58 0 chr6 33147316 33147419 -116369618 + Lx9 LINE L1 7535 7643 -1 2 837 23 0 0 0 chr6 33147420 33147443 -116369594 + AT_rich Low_complexity Low_complexity 1 23 0 2 837 255 354 41 10 chr6 33147534 33147631 -116369406 - MER5A DNA MER1_type -11 178 79 2 837 750 269 31 27 chr6 33148216 33148438 -116368599 + ID_B1 SINE B4 1 223 -1 2 837 230 140 0 34 chr6 33148445 33148504 -116368533 + A-rich Low_complexity Low_complexity 4 60 0 2 837 34952 64 0 16 chr6 33150454 33155618 -116361419 + L1Md_F2 LINE L1 508 5586 -297 2 837 8385 45 1 67 chr6 33155618 33156684 -116360353 + L1Md_F2 LINE L1 5587 6582 0 2 837 828 229 33 39 chr6 33157866 33158048 -116358989 + B3A SINE B2 2 182 -16 2 837 7804 87 29 2 chr6 33158104 33159620 -116357417 + L1VL2 LINE L1 515 2082 -1832 2 837 270 0 0 0 chr6 33159620 33159650 -116357387 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 2 837 7804 139 22 11 chr6 33159650 33159986 -116357051 + L1VL2 LINE L1 2083 2452 -3688 2 837 2151 264 27 68 chr6 33160726 33160853 -116356184 - L1_Rod LINE L1 -1222 4625 4499 2 837 2738 52 95 0 chr6 33160853 33161199 -116355838 - L1Md_F2 LINE L1 -4 6578 6200 2 104 2151 264 27 68 chr6 33161199 33161932 -116355105 - L1_Rod LINE L1 -1349 4498 3801 2 838 23 68 0 0 chr6 33161960 33162004 -116355033 + AT_rich Low_complexity Low_complexity 1 44 0 2 838 249 270 22 17 chr6 33162100 33162176 -116354861 + B4 SINE B4 236 288 -4 2 838 31 44 0 0 chr6 33162215 33162260 -116354777 + AT_rich Low_complexity Low_complexity 1 45 0 2 838 245 246 15 0 chr6 33162429 33162494 -116354543 + L1M5 LINE L1 2995 3060 -3086 2 838 1100 231 34 0 chr6 33162494 33162702 -116354335 + B3 SINE B2 1 215 -1 2 838 771 314 5 5 chr6 33162941 33163152 -116353885 + ID_B1 SINE B4 1 211 -13 2 838 383 308 40 36 chr6 33163266 33163542 -116353495 + L1M5 LINE L1 3359 3635 -2511 2 838 23 0 0 0 chr6 33164006 33164029 -116353008 + AT_rich Low_complexity Low_complexity 1 23 0 2 838 1179 255 174 31 chr6 33164203 33164588 -116352449 - Lx8 LINE L1 -326 7147 6708 2 838 225 303 15 29 chr6 33164866 33164934 -116352103 - RLTR31A_Mm LTR ERVK -172 412 346 2 838 234 91 0 0 chr6 33165262 33165295 -116351742 + (A)n Simple_repeat Simple_repeat 1 33 0 2 838 231 296 30 30 chr6 33165811 33165912 -116351125 + MLT1A1 LTR MaLR 308 408 0 2 838 567 327 52 38 chr6 33166071 33166338 -116350699 + L2 LINE L2 2326 2596 -823 2 838 853 163 96 6 chr6 33166886 33167053 -116349984 + B2_Mm2 SINE B2 3 184 -11 2 838 552 30 0 0 chr6 33167053 33167119 -116349918 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 838 441 231 65 38 chr6 33167451 33167624 -116349413 + B4 SINE B4 86 292 0 2 838 637 153 6 6 chr6 33167640 33167798 -116349239 + CT-rich Low_complexity Low_complexity 1 158 0 2 838 312 292 56 0 chr6 33167808 33167897 -116349140 - MER63D DNA AcHobo -693 368 275 2 838 215 164 0 35 chr6 33168185 33168242 -116348795 + G-rich Low_complexity Low_complexity 2 56 0 2 838 642 294 159 15 chr6 33168689 33169080 -116347957 - Charlie7 DNA MER1_type -2063 549 103 2 838 501 238 35 208 chr6 33169527 33169782 -116347255 - B3 SINE B2 0 216 6 2 838 1071 242 94 33 chr6 33170033 33170362 -116346675 - ORR1E LTR MaLR -5 354 6 2 838 25 51 0 0 chr6 33170604 33170643 -116346394 + AT_rich Low_complexity Low_complexity 1 39 0 2 838 559 146 28 7 chr6 33172038 33172183 -116344854 + (CA)n Simple_repeat Simple_repeat 2 149 0 2 838 1120 90 0 0 chr6 33172494 33172639 -116344398 - B1_Mus1 SINE Alu 0 148 4 2 838 543 228 196 40 chr6 33173559 33173783 -116343254 - L1MB5 LINE L1 -149 6025 5767 3 838 342 67 0 0 chr6 33173837 33173882 -116343155 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 838 802 216 97 5 chr6 33173894 33174089 -116342948 - ID_B1 SINE B4 -4 220 8 3 838 1788 189 77 3 chr6 33175048 33175425 -116341612 - MTD LTR MaLR -14 405 1 3 838 667 293 98 38 chr6 33175644 33175910 -116341127 + B4A SINE B4 11 292 0 3 838 357 289 12 6 chr6 33175919 33176079 -116340958 + (CA)n Simple_repeat Simple_repeat 1 161 0 3 838 372 335 6 51 chr6 33176081 33176257 -116340780 - MIR SINE MIR -69 193 26 3 838 333 0 0 0 chr6 33176601 33176638 -116340399 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 838 688 265 82 151 chr6 33178148 33178290 -116338747 - MTEa LTR MaLR -37 342 185 3 838 586 169 197 24 chr6 33178290 33178417 -116338620 - B1F2 SINE Alu 0 149 1 3 838 688 265 82 151 chr6 33178417 33178448 -116338589 - MTEa LTR MaLR -195 184 177 3 838 1134 196 0 14 chr6 33178448 33178660 -116338377 - B3 SINE B2 -5 211 3 3 838 688 265 82 151 chr6 33178660 33178850 -116338187 - MTEa LTR MaLR -203 176 3 3 838 228 35 0 0 chr6 33178967 33178996 -116338041 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 3 838 228 289 116 0 chr6 33179160 33179281 -116337756 - L1ME2z LINE L1 -2 6442 6308 3 838 297 252 172 0 chr6 33179455 33179554 -116337483 + PB1D10 SINE Alu 2 117 0 3 838 22 0 0 0 chr6 33179806 33179828 -116337209 + AT_rich Low_complexity Low_complexity 1 22 0 3 838 225 0 0 0 chr6 33180095 33180120 -116336917 + (A)n Simple_repeat Simple_repeat 1 25 0 3 838 2606 162 95 2 chr6 33180145 33180628 -116336409 + RLTR11A LTR ERVK 1 528 0 3 838 1574 109 7 63 chr6 33180629 33180914 -116336123 - L1_Mur2 LINE L1 -471 5406 5138 3 838 2087 169 5 36 chr6 33180914 33181301 -116335736 + Lx5 LINE L1 6676 7050 0 3 838 315 0 0 0 chr6 33181443 33181478 -116335559 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 838 235 340 55 9 chr6 33181706 33181816 -116335221 - MamRep38 DNA hAT -2 293 179 3 838 565 305 39 0 chr6 33182184 33182338 -116334699 + RSINE1 SINE B4 2 161 -4 3 838 25 65 0 0 chr6 33182345 33182391 -116334646 + AT_rich Low_complexity Low_complexity 1 46 0 3 838 243 279 192 28 chr6 33182504 33182821 -116334216 + Helitron1Nb_Mam RC Helitron 106 474 -642 3 838 620 265 8 3 chr6 33182855 33183029 -116334008 - B3A SINE B2 -4 212 32 3 838 392 279 7 5 chr6 33183545 33183656 -116333381 - PB1D10 SINE Alu -23 126 15 3 838 1525 190 81 51 chr6 33184242 33184635 -116332402 + MTD LTR MaLR 1 405 -14 3 838 1940 121 19 0 chr6 33185700 33186015 -116331022 - ORR1A4 LTR MaLR -8 321 1 3 838 3493 20 5 0 chr6 33186020 33186414 -116330623 - MTA_Mm LTR MaLR 0 396 1 3 838 440 269 9 9 chr6 33186502 33186607 -116330430 + PB1D10 SINE Alu 5 109 -8 3 838 250 206 97 56 chr6 33186750 33186822 -116330215 - L1MB5 LINE L1 -67 6107 6033 3 838 624 279 99 114 chr6 33186838 33187008 -116330029 + RMER10A LTR ERVL 12 178 -264 3 838 2511 132 0 31 chr6 33187008 33187398 -116329639 - RLTR14 LTR ERV1 -2 380 3 3 838 624 279 99 114 chr6 33187398 33187515 -116329522 + RMER10A LTR ERVL 179 270 -172 3 838 437 0 19 0 chr6 33187515 33187568 -116329469 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 838 624 279 99 114 chr6 33187568 33187691 -116329346 + RMER10A LTR ERVL 271 416 -26 3 838 1636 290 50 7 chr6 33187698 33188257 -116328780 - L1MB5 LINE L1 -153 6021 5439 3 838 298 237 0 0 chr6 33188455 33188514 -116328523 + RSINE1 SINE B4 83 141 -24 3 838 225 0 0 0 chr6 33188522 33188547 -116328490 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 838 273 29 0 0 chr6 33188557 33188591 -116328446 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 838 329 153 14 0 chr6 33188586 33188658 -116328379 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 838 234 0 0 0 chr6 33188669 33188695 -116328342 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 838 894 112 19 0 chr6 33188695 33188854 -116328183 + (CA)n Simple_repeat Simple_repeat 1 163 0 3 838 341 299 11 0 chr6 33188987 33189125 -116327912 - L1MB5 LINE L1 -830 5316 5169 3 838 209 278 19 0 chr6 33189398 33189452 -116327585 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 838 313 358 23 62 chr6 33189558 33189734 -116327303 - B4 SINE B4 -118 174 6 3 838 279 71 0 0 chr6 33190204 33190246 -116326791 + (T)n Simple_repeat Simple_repeat 1 42 0 3 838 680 287 0 80 chr6 33190900 33190983 -116326054 - B3A SINE B2 -4 212 146 3 838 2391 149 32 12 chr6 33190983 33191391 -116325646 + MTC LTR MaLR 3 418 -3 3 838 680 282 0 67 chr6 33191391 33191540 -116325497 - B3A SINE B2 -51 147 2 3 838 237 33 0 0 chr6 33191654 33191684 -116325353 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 838 852 282 111 44 chr6 33192449 33192946 -116324091 - L1MB5 LINE L1 -15 6159 5630 3 838 424 195 1 2 chr6 33193041 33193136 -116323901 + PB1D9 SINE Alu 3 96 -51 3 838 236 268 0 0 chr6 33193123 33193179 -116323858 + RSINE1 SINE B4 82 137 -28 3 838 24 77 0 0 chr6 33193275 33193327 -116323710 + AT_rich Low_complexity Low_complexity 1 52 0 3 838 1267 96 39 0 chr6 33193331 33193509 -116323528 - B2_Mm2 SINE B2 -9 186 2 3 838 624 244 89 43 chr6 33193509 33193766 -116323271 - L1MB5 LINE L1 -994 5152 4884 3 838 647 249 92 10 chr6 33193852 33194047 -116322990 + B3 SINE B2 3 213 -3 3 838 1068 75 14 0 chr6 33194058 33194205 -116322832 - B2_Mm2 SINE B2 -46 149 1 3 838 198 103 0 0 chr6 33194222 33194251 -116322786 + (A)n Simple_repeat Simple_repeat 1 29 0 3 838 416 235 9 38 chr6 33194436 33194542 -116322495 - B4 SINE B4 0 292 190 3 838 1215 48 7 0 chr6 33194988 33195134 -116321903 - B1_Mm SINE Alu 0 147 1 3 838 207 162 0 0 chr6 33195700 33195737 -116321300 + T-rich Low_complexity Low_complexity 4 40 0 3 838 640 248 0 0 chr6 33195759 33195892 -116321145 - B1_Mur3 SINE Alu -16 133 1 3 838 536 295 103 16 chr6 33195895 33196094 -116320943 - L1MB5 LINE L1 -1776 4370 4156 3 838 384 22 0 0 chr6 33196094 33196139 -116320898 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 838 536 299 106 15 chr6 33196139 33196301 -116320736 - L1MB5 LINE L1 -1991 4155 3967 3 838 210 37 0 0 chr6 33196902 33196929 -116320108 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 838 894 140 67 0 chr6 33198370 33198534 -116318503 + URR1A DNA MER1_type 15 189 -37 3 838 352 135 27 0 chr6 33199758 33199832 -116317205 + CT-rich Low_complexity Low_complexity 3 78 0 3 838 189 281 0 0 chr6 33200600 33200657 -116316380 + L2a LINE L2 3370 3426 0 3 838 655 98 18 0 chr6 33201057 33201169 -116315868 - URR1A DNA MER1_type -31 195 82 3 838 431 288 73 36 chr6 33201203 33201340 -116315697 - ID_B1 SINE B4 -10 214 73 3 838 462 36 0 0 chr6 33202308 33202364 -116314673 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 3 838 561 246 17 0 chr6 33202375 33202493 -116314544 - B1_Mur1 SINE Alu -29 120 1 3 838 423 281 21 36 chr6 33202657 33202797 -116314240 - ID_B1 SINE B4 -7 217 80 3 838 306 0 0 0 chr6 33203148 33203182 -116313855 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 838 466 221 101 1 chr6 33203945 33204072 -116312965 + ID_B1 SINE B4 2 142 -150 3 838 206 287 60 87 chr6 33204450 33204599 -116312438 + MIRb SINE MIR 103 247 -21 3 838 447 184 13 0 chr6 33204729 33204805 -116312232 - BC1_Mm scRNA scRNA -75 77 1 3 838 201 74 0 0 chr6 33205224 33205251 -116311786 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 838 2302 161 91 8 chr6 33205251 33205726 -116311311 - RMER5 LTR ERV1 -20 514 1 3 838 236 292 52 17 chr6 33205750 33205865 -116311172 + MER5A1 DNA MER1_type 40 158 -8 3 838 346 170 337 10 chr6 33206007 33206108 -116310929 + B3A SINE B2 6 139 -59 3 838 288 0 0 0 chr6 33206121 33206153 -116310884 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 838 1332 142 37 0 chr6 33206494 33206712 -116310325 + URR1A DNA MER1_type 1 226 0 3 838 641 311 54 70 chr6 33208718 33209105 -116307932 - MLT1B LTR MaLR -8 382 2 3 838 223 346 88 66 chr6 33209326 33209462 -116307575 + L4 LINE RTE 1362 1500 -529 3 838 271 306 40 16 chr6 33209635 33209761 -116307276 + L4 LINE RTE 1790 1918 -111 3 838 1201 62 0 0 chr6 33209819 33209965 -116307072 + B1_Mus2 SINE Alu 1 146 -1 3 838 215 31 31 0 chr6 33209967 33209999 -116307038 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 3 838 371 289 17 17 chr6 33211039 33211155 -116305882 - PB1D10 SINE Alu -1 116 1 3 838 496 228 26 9 chr6 33211215 33211330 -116305707 - ID_B1 SINE B4 -2 222 106 3 838 247 327 1 73 chr6 33211370 33211497 -116305540 - B1_Mur3 SINE Alu 0 120 1 3 838 275 207 0 49 chr6 33211559 33211620 -116305417 - ID4 SINE ID -6 77 20 3 838 390 57 0 0 chr6 33212538 33212591 -116304446 + (CAA)n Simple_repeat Simple_repeat 2 54 0 3 838 521 257 57 0 chr6 33213070 33213210 -116303827 + B1F SINE Alu 2 149 0 3 838 24 32 0 0 chr6 33215031 33215062 -116301975 + AT_rich Low_complexity Low_complexity 1 31 0 3 838 399 41 0 0 chr6 33216359 33216408 -116300629 + (A)n Simple_repeat Simple_repeat 1 49 0 3 838 245 293 13 0 chr6 33216470 33216545 -116300492 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 838 792 296 42 8 chr6 33216550 33216815 -116300222 - B4A SINE B4 -10 282 9 3 838 201 39 0 0 chr6 33217999 33218025 -116299012 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 838 333 117 0 0 chr6 33218720 33218780 -116298257 + (A)n Simple_repeat Simple_repeat 1 60 0 3 838 890 164 14 0 chr6 33218804 33218950 -116298087 - B1_Mur4 SINE Alu 0 150 3 3 838 204 320 6 56 chr6 33220879 33221058 -116295979 + (CGTTG)n Simple_repeat Simple_repeat 3 172 0 3 838 1524 224 138 31 chr6 33221701 33222282 -116294755 - L1MA8 LINE L1 -4 6287 5645 3 838 436 319 0 8 chr6 33222282 33222399 -116294638 - Tigger5 DNA MER2_type 0 2406 2291 3 838 549 347 45 10 chr6 33222406 33222607 -116294430 - Tigger5 DNA MER2_type -2179 227 20 3 838 638 191 88 7 chr6 33222735 33222872 -116294165 - B1_Mur2 SINE Alu -1 148 1 3 838 368 319 24 48 chr6 33223020 33223145 -116293892 - B1F SINE Alu -26 123 2 3 838 234 348 32 89 chr6 33223041 33223164 -116293873 - MT2B LTR ERVL -339 262 147 4 838 2848 55 0 0 chr6 33223838 33224184 -116292853 - ORR1A1 LTR MaLR 0 346 1 4 838 2168 135 11 20 chr6 33224398 33224770 -116292267 - ORR1A2 LTR MaLR 0 370 1 4 838 278 223 251 16 chr6 33225043 33225230 -116291807 - HAL1 LINE L1 -845 1662 1432 4 838 237 65 0 0 chr6 33225337 33225368 -116291669 + (T)n Simple_repeat Simple_repeat 1 31 0 4 838 252 296 55 16 chr6 33226328 33226363 -116290674 + B4 SINE B4 56 91 -201 4 838 226 286 109 11 chr6 33226363 33226455 -116290582 + PB1D9 SINE Alu 3 103 -17 4 838 240 59 0 0 chr6 33228106 33228140 -116288897 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 838 235 288 0 96 chr6 33228391 33228464 -116288573 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 4 838 297 366 7 22 chr6 33228485 33228622 -116288415 - ID_B1 SINE B4 -9 215 81 4 838 437 302 135 43 chr6 33229033 33229358 -116287679 - ORR1E LTR MaLR -3 356 2 4 838 1514 250 57 22 chr6 33229486 33229891 -116287146 + MTD LTR MaLR 1 419 0 4 838 361 311 228 7 chr6 33230165 33230557 -116286480 - L1MD LINE L1 -867 5279 4783 4 838 23 78 0 0 chr6 33230898 33230949 -116286088 + AT_rich Low_complexity Low_complexity 1 51 0 4 838 1566 188 113 62 chr6 33230987 33231475 -116285562 - Lx9 LINE L1 -129 7515 7003 4 838 365 388 16 8 chr6 33231477 33231599 -116285438 - RSINE1 SINE B4 -38 127 5 4 838 6170 53 1 4 chr6 33231797 33232568 -116284469 - L1Md_F2 LINE L1 -2 6580 5812 4 838 24 32 0 0 chr6 33232759 33232790 -116284247 + AT_rich Low_complexity Low_complexity 1 31 0 4 838 249 326 104 26 chr6 33232804 33232970 -116284067 - MIR SINE MIR -3 265 87 4 838 287 313 27 88 chr6 33234353 33234500 -116282537 - AmnSINE1 SINE SINE -1 574 437 4 838 239 333 96 11 chr6 33234575 33234669 -116282368 + MIRb SINE MIR 22 123 -145 4 838 1072 203 5 10 chr6 33234763 33234972 -116282065 - B3 SINE B2 -8 208 1 4 838 303 320 0 20 chr6 33235598 33235700 -116281337 + MER5B DNA MER1_type 38 137 -41 4 838 220 179 36 0 chr6 33237633 33237689 -116279348 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 838 285 29 0 0 chr6 33239123 33239157 -116277880 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 838 258 56 0 0 chr6 33239626 33239662 -116277375 + (T)n Simple_repeat Simple_repeat 1 36 0 4 838 3662 32 0 7 chr6 33239683 33240121 -116276916 - L1Md_F3 LINE L1 -1 6583 6149 4 838 7965 30 0 0 chr6 33240938 33242126 -116274911 - L1Md_T LINE L1 0 6582 5395 4 838 4695 18 2 0 chr6 33242125 33242696 -116274341 + L1Md_T LINE L1 4819 5390 -493 4 838 588 173 27 95 chr6 33242740 33242887 -116274150 + B2_Mm2 SINE B2 57 193 -2 4 838 4344 212 123 13 chr6 33242883 33243951 -116273086 - ORR1C1-int LTR MaLR -167 1203 19 4 838 729 238 21 16 chr6 33243975 33244163 -116272874 - ORR1C1 LTR MaLR -189 189 1 4 838 909 156 0 0 chr6 33245187 33245328 -116271709 - B1_Mur4 SINE Alu -9 141 1 4 838 388 273 11 0 chr6 33246209 33246297 -116270740 + PB1D10 SINE Alu 29 117 0 4 838 310 69 35 0 chr6 33246297 33246355 -116270682 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 4 838 22 35 0 0 chr6 33247925 33247954 -116269083 + AT_rich Low_complexity Low_complexity 1 29 0 4 838 207 0 0 0 chr6 33248167 33248190 -116268847 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 838 1017 330 21 14 chr6 33248203 33248486 -116268551 + B4A SINE B4 4 288 -4 4 838 228 67 0 0 chr6 33248579 33248609 -116268428 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 4 838 316 149 40 0 chr6 33250030 33250104 -116266933 + CT-rich Low_complexity Low_complexity 3 79 0 4 838 354 107 18 18 chr6 33250485 33250542 -116266495 + HAL1-3A_ME LINE L1 1956 2012 -846 4 838 825 221 0 0 chr6 33250553 33250865 -116266172 + (TA)n Simple_repeat Simple_repeat 1 312 0 4 838 264 59 0 0 chr6 33250893 33250927 -116266110 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 838 503 283 87 13 chr6 33251668 33251724 -116265313 + B4 SINE B4 25 221 -70 4 838 619 248 16 0 chr6 33251724 33251849 -116265188 + B1_Mm SINE Alu 1 127 -20 4 838 195 100 0 0 chr6 33251952 33251982 -116265055 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 838 22 35 0 0 chr6 33252579 33252608 -116264429 + AT_rich Low_complexity Low_complexity 1 29 0 4 838 273 288 162 0 chr6 33252807 33252887 -116264150 + B1F1 SINE Alu 6 98 -51 4 838 198 0 0 0 chr6 33252905 33252927 -116264110 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 4 838 920 225 92 120 chr6 33252931 33253157 -116263880 - RMER4A LTR ERVK -14 452 263 4 838 369 0 0 0 chr6 33253157 33253198 -116263839 + (CAG)n Simple_repeat Simple_repeat 3 43 0 4 838 920 225 92 120 chr6 33253198 33253436 -116263601 - RMER4A LTR ERVK -204 262 1 4 838 374 129 0 45 chr6 33254003 33254092 -116262945 + GA-rich Low_complexity Low_complexity 6 90 0 4 838 1189 182 39 0 chr6 33254188 33254391 -116262646 + URR1A DNA MER1_type 16 226 0 4 838 243 308 101 18 chr6 33256033 33256142 -116260895 - PB1 SINE Alu -7 120 3 4 838 21 57 0 0 chr6 33256662 33256697 -116260340 + AT_rich Low_complexity Low_complexity 1 35 0 4 838 230 208 75 0 chr6 33257074 33257127 -116259910 - MIR SINE MIR -10 252 196 4 838 204 125 0 0 chr6 33257166 33257198 -116259839 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 838 234 341 62 31 chr6 33257219 33257349 -116259688 - MIR SINE MIR -123 139 6 4 838 25 0 0 0 chr6 33257411 33257436 -116259601 + AT_rich Low_complexity Low_complexity 1 25 0 4 838 706 292 44 29 chr6 33257463 33257738 -116259299 + B4A SINE B4 2 280 -12 4 838 439 268 60 45 chr6 33257739 33257872 -116259165 + ID_B1 SINE B4 88 222 -2 4 838 467 291 57 44 chr6 33257877 33258035 -116259002 - MLT1D LTR MaLR -97 408 249 4 838 4025 151 148 62 chr6 33258055 33258500 -116258537 - RLTR25B LTR ERVK 0 1028 558 4 838 186 43 0 0 chr6 33258500 33258523 -116258514 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 838 4025 151 148 62 chr6 33258523 33259020 -116258017 - RLTR25B LTR ERVK -471 557 5 4 838 528 281 87 72 chr6 33259035 33259242 -116257795 - MLT1D LTR MaLR -291 214 5 4 838 180 0 0 0 chr6 33260874 33260894 -116256143 + (T)n Simple_repeat Simple_repeat 1 20 0 4 838 390 42 0 0 chr6 33261262 33261310 -116255727 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 838 387 127 0 0 chr6 33261491 33261554 -116255483 + (TCC)n Simple_repeat Simple_repeat 2 64 0 4 838 21 71 0 0 chr6 33261908 33261950 -116255087 + AT_rich Low_complexity Low_complexity 1 42 0 4 838 231 329 30 30 chr6 33262232 33262398 -116254639 - L1MA8 LINE L1 -352 5939 5774 4 838 1865 282 128 32 chr6 33262434 33263688 -116253349 - L1MA8 LINE L1 -1269 4874 3492 4 838 1162 75 0 0 chr6 33263688 33263835 -116253202 - B1_Mus2 SINE Alu 0 147 1 4 838 1865 282 128 32 chr6 33263835 33264563 -116252474 - L1MA8 LINE L1 -2652 3491 2703 4 838 399 300 78 4 chr6 33264675 33264906 -116252131 - L1MA8 LINE L1 -3470 2673 2426 4 838 215 191 16 0 chr6 33264912 33264975 -116252062 + (TATG)n Simple_repeat Simple_repeat 4 67 0 4 838 1941 147 15 12 chr6 33265410 33265734 -116251303 + ORR1A3 LTR MaLR 2 326 0 4 838 255 219 0 47 chr6 33266045 33266131 -116250906 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 4 838 25 0 0 0 chr6 33266213 33266238 -116250799 + AT_rich Low_complexity Low_complexity 1 25 0 4 838 560 299 7 33 chr6 33266366 33266518 -116250519 + RSINE1 SINE B4 2 149 -16 4 838 416 35 17 0 chr6 33266521 33266579 -116250458 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 838 31 0 0 0 chr6 33266581 33266612 -116250425 + AT_rich Low_complexity Low_complexity 1 31 0 4 838 352 307 79 14 chr6 33267029 33267168 -116249869 - B1F2 SINE Alu -1 148 1 4 838 3287 36 5 8 chr6 33267668 33268065 -116248972 + MTA_Mm LTR MaLR 1 396 0 4 838 399 348 78 54 chr6 33268243 33268653 -116248384 - L1M5 LINE L1 -1323 4823 4404 4 838 1126 228 57 3 chr6 33268685 33269035 -116248002 + RMER1B Other Other 256 684 -382 4 838 668 180 144 35 chr6 33269047 33269220 -116247817 + RMER1A Other Other 837 1028 -2 4 838 345 331 23 38 chr6 33269524 33269656 -116247381 - B4A SINE B4 0 292 163 4 838 355 309 55 116 chr6 33269673 33269948 -116247089 - ORR1E LTR MaLR -76 283 26 4 838 2065 113 0 61 chr6 33270070 33270400 -116246637 - ORR1A4 LTR MaLR -1 328 19 4 838 309 89 0 0 chr6 33270400 33270445 -116246592 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 4 838 300 313 84 84 chr6 33270445 33270623 -116246414 - B4A SINE B4 -114 178 1 4 838 252 86 0 0 chr6 33270887 33270922 -116246115 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 4 838 418 274 28 15 chr6 33271007 33271250 -116245787 - L1MC4a LINE L1 -1166 6829 6571 4 838 21 57 0 0 chr6 33271392 33271427 -116245610 + AT_rich Low_complexity Low_complexity 1 35 0 4 838 33 0 0 0 chr6 33271474 33271507 -116245530 + AT_rich Low_complexity Low_complexity 1 33 0 4 838 3474 51 21 0 chr6 33271510 33271939 -116245098 - L1_Mus1 LINE L1 0 6567 6130 4 838 198 0 0 0 chr6 33272013 33272035 -116245002 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4 838 291 121 0 57 chr6 33272280 33272350 -116244687 + GA-rich Low_complexity Low_complexity 2 67 0 4 838 1030 230 204 12 chr6 33272374 33272801 -116244236 - Lx7 LINE L1 -423 7273 6765 4 838 753 237 163 48 chr6 33272821 33273153 -116243884 - ORR1D2 LTR MaLR 0 370 1 4 838 245 294 84 0 chr6 33273345 33273488 -116243549 - L1MC4a LINE L1 -1880 6002 5848 4 838 1749 263 80 17 chr6 33273708 33274728 -116242309 - L1MB3 LINE L1 -131 6052 4965 4 838 315 0 0 0 chr6 33274814 33274849 -116242188 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 838 617 295 92 64 chr6 33275028 33275572 -116241465 - L1MC4 LINE L1 -4763 1452 850 4 838 267 31 0 0 chr6 33275645 33275677 -116241360 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 838 258 235 88 39 chr6 33275681 33275783 -116241254 - L1MC4 LINE L1 -5497 718 612 4 838 24 0 0 0 chr6 33275989 33276013 -116241024 + AT_rich Low_complexity Low_complexity 1 24 0 4 838 304 317 41 51 chr6 33276015 33276211 -116240826 - MIRb SINE MIR -49 219 24 4 838 782 190 22 27 chr6 33276463 33276643 -116240394 + B3 SINE B2 10 186 -9 4 838 1047 251 51 7 chr6 33276834 33277107 -116239930 + LTR82B Low_complexity ERVL 52 336 -494 4 838 235 170 168 11 chr6 33277642 33277737 -116239300 - Lx9 LINE L1 -4 7640 7531 5 838 840 83 128 0 chr6 33277742 33277875 -116239162 - B1_Mur4 SINE Alu 0 150 1 5 838 2846 15 3 0 chr6 33277895 33278222 -116238815 - L1Md_A LINE L1 0 6582 6255 5 838 207 0 0 0 chr6 33278948 33278971 -116238066 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 838 1131 52 0 0 chr6 33278972 33279108 -116237929 - B1_Mus1 SINE Alu -12 136 1 5 838 1191 265 51 7 chr6 33280586 33281034 -116236003 - L1MB3 LINE L1 -15 6168 5701 5 838 259 307 27 0 chr6 33281164 33281239 -116235798 - B4A SINE B4 -175 117 41 5 838 298 273 173 11 chr6 33281530 33281655 -116235382 - B1F SINE Alu 0 149 9 5 838 404 343 50 15 chr6 33282764 33282965 -116234072 - MIRb SINE MIR -58 210 3 5 838 391 291 9 0 chr6 33283345 33283455 -116233582 + PB1D10 SINE Alu 1 111 -6 5 838 185 159 0 22 chr6 33284502 33284547 -116232490 + CT-rich Low_complexity Low_complexity 4 47 0 5 838 223 254 0 0 chr6 33284552 33284619 -116232418 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 5 838 22 35 0 0 chr6 33285485 33285514 -116231523 + AT_rich Low_complexity Low_complexity 1 29 0 5 838 298 303 73 21 chr6 33286624 33286816 -116230221 - L1MC LINE L1 -2285 5597 5396 5 838 433 311 51 15 chr6 33287090 33287227 -116229810 - Tigger7 DNA MER2_type -2348 143 2 5 838 2796 32 6 0 chr6 33287529 33287869 -116229168 - MTA_Mm LTR MaLR -54 342 1 5 838 2693 65 54 15 chr6 33287869 33288261 -116228776 - MTA_Mm-int LTR MaLR 0 1098 692 5 838 2369 85 0 24 chr6 33288368 33288705 -116228332 - L1_Mus1 LINE L1 -1 6566 6238 5 838 207 0 0 0 chr6 33289708 33289731 -116227306 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 5 838 441 90 0 0 chr6 33292109 33292176 -116224861 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 838 306 0 0 0 chr6 33292176 33292209 -116224828 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 839 674 113 9 0 chr6 33292634 33292749 -116224288 + (TCCC)n Simple_repeat Simple_repeat 4 119 0 5 839 355 19 39 0 chr6 33293297 33293349 -116223688 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 839 259 204 0 0 chr6 33293629 33293683 -116223354 - L1M2 LINE L1 -501 5799 5746 5 839 429 300 104 20 chr6 33294746 33295093 -116221944 - L1M4 LINE L1 -456 5728 5353 5 839 216 0 0 0 chr6 33295178 33295202 -116221835 + (T)n Simple_repeat Simple_repeat 1 24 0 5 839 180 244 143 71 chr6 33297131 33297215 -116219822 + MIRc SINE MIR 120 209 -59 5 839 183 80 0 0 chr6 33297748 33297773 -116219264 + (TTCTG)n Simple_repeat Simple_repeat 4 28 0 5 839 263 340 18 45 chr6 33298286 33298397 -116218640 + ID_B1 SINE B4 117 224 0 5 839 638 283 144 51 chr6 33299999 33301117 -116215920 + L1MEf LINE L1 1176 2363 -4037 5 839 581 165 0 8 chr6 33301884 33302006 -116215031 + GA-rich Low_complexity Low_complexity 1 121 0 5 839 19457 101 66 14 chr6 33304035 33305496 -116211541 - L1_Mus3 LINE L1 -59 6938 5104 5 839 1015 113 0 0 chr6 33305496 33305638 -116211399 - B1_Mm SINE Alu -5 142 1 5 839 19457 102 87 38 chr6 33305638 33306376 -116210661 - L1_Mus3 LINE L1 -780 5103 4435 5 839 1037 103 7 0 chr6 33306376 33306522 -116210515 - B1_Mus2 SINE Alu 0 147 1 5 839 19457 102 87 38 chr6 33306522 33308405 -116208632 - L1_Mus3 LINE L1 -1449 4434 2291 5 839 2593 187 7 44 chr6 33308401 33308966 -116208071 - L1VL1 LINE L1 -5878 544 1 5 839 326 281 147 23 chr6 33308971 33309529 -116207508 - L1MC5 LINE L1 -30 7931 7305 5 839 4231 127 27 20 chr6 33309927 33310621 -116206416 - L1_Mus4 LINE L1 -2 6634 5936 5 839 1236 187 10 11 chr6 33313633 33313939 -116203098 + MTC LTR MaLR 1 399 -8 5 839 1766 162 42 31 chr6 33313942 33314324 -116202713 + MTC-int LTR MaLR 2 387 -871 5 839 318 339 94 29 chr6 33314468 33314638 -116202399 + MLT1A0 LTR MaLR 14 194 -171 5 839 545 198 0 9 chr6 33314655 33314762 -116202275 + MLT1A0 LTR MaLR 249 354 -11 5 839 557 285 65 101 chr6 33315837 33316173 -116200864 - ORR1E LTR MaLR -10 349 26 5 839 1200 102 396 0 chr6 33316295 33316530 -116200507 - ORR1A4 LTR MaLR -1 328 1 5 839 351 0 0 0 chr6 33316932 33316971 -116200066 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 839 243 354 61 0 chr6 33317131 33317213 -116199824 + PB1D7 SINE Alu 24 110 -10 5 839 28 0 0 0 chr6 33318124 33318152 -116198885 + AT_rich Low_complexity Low_complexity 1 28 0 5 839 190 89 67 0 chr6 33318731 33318776 -116198261 + T-rich Low_complexity Low_complexity 2 49 0 5 839 4810 139 56 26 chr6 33318781 33319653 -116197384 - Lx3B LINE L1 -4 6969 6072 5 839 5029 203 77 8 chr6 33319903 33321155 -116195882 - Lx9 LINE L1 0 7644 6307 5 839 355 134 90 0 chr6 33321765 33321832 -116195205 - URR1B DNA MER1_type 0 225 153 5 839 641 199 23 15 chr6 33321921 33322054 -116194983 - URR1B DNA MER1_type -74 151 18 5 839 301 239 205 47 chr6 33322320 33322491 -116194546 - B3A SINE B2 0 198 1 5 839 482 120 0 12 chr6 33323064 33323148 -116193889 - L1_Mus3 LINE L1 -12 6626 6544 5 839 23 33 0 0 chr6 33323467 33323497 -116193540 + AT_rich Low_complexity Low_complexity 1 30 0 5 839 204 167 0 0 chr6 33324013 33324061 -116192976 + T-rich Low_complexity Low_complexity 1 48 0 5 839 738 209 7 7 chr6 33324071 33324220 -116192817 - B1_Mur2 SINE Alu 0 149 1 5 839 326 298 79 40 chr6 33324340 33324466 -116192571 - MER5A1 DNA MER1_type -2 164 34 5 839 2216 65 13 7 chr6 33324736 33325044 -116191993 - L1_Mus3 LINE L1 0 6638 6329 5 839 305 261 90 11 chr6 33325334 33325423 -116191614 - HAL1 LINE L1 -1532 975 880 5 839 790 132 6 39 chr6 33325438 33325619 -116191418 + CT-rich Low_complexity Low_complexity 3 177 0 5 839 885 75 6 55 chr6 33325584 33325766 -116191271 + (TCTCC)n Simple_repeat Simple_repeat 4 176 0 5 839 342 0 0 0 chr6 33325766 33325804 -116191233 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 5 839 592 218 0 0 chr6 33325804 33325914 -116191123 - B1_Mur4 SINE Alu -16 134 25 5 839 760 107 0 37 chr6 33327998 33328134 -116188903 + (TCCC)n Simple_repeat Simple_repeat 3 133 0 5 839 241 246 0 90 chr6 33328399 33328466 -116188571 - RMER20B LTR ERVK -38 589 529 5 839 783 240 111 35 chr6 33328503 33328819 -116188218 - RMER20B LTR ERVK -214 413 96 5 839 1018 255 137 46 chr6 33328966 33329295 -116187742 - MTEa LTR MaLR -20 359 1 5 839 23 78 0 0 chr6 33329900 33329951 -116187086 + AT_rich Low_complexity Low_complexity 1 51 0 5 839 363 304 185 22 chr6 33330829 33331061 -116185976 + MER31B LTR ERV1 193 462 -4 5 839 201 389 0 0 chr6 33331206 33331278 -116185759 - MIRb SINE MIR -181 87 16 5 839 201 74 0 0 chr6 33331809 33331836 -116185201 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 5 839 1356 142 32 51 chr6 33331841 33332094 -116184943 - ORR1B1 LTR MaLR -51 343 96 5 839 462 177 54 59 chr6 33333040 33333226 -116183811 + RMER17C LTR ERVK 91 275 -135 5 839 21 0 0 0 chr6 33333772 33333793 -116183244 + AT_rich Low_complexity Low_complexity 1 21 0 5 839 618 308 30 5 chr6 33333890 33334101 -116182936 + B3A SINE B2 1 215 -1 5 839 598 276 66 0 chr6 33335566 33335747 -116181290 - RMER15 LTR ERVL 0 575 383 5 839 379 329 90 7 chr6 33335790 33335934 -116181103 - Lx8 LINE L1 -286 7187 7032 5 839 23 68 0 0 chr6 33336026 33336070 -116180967 + AT_rich Low_complexity Low_complexity 1 44 0 5 839 1017 293 58 9 chr6 33336076 33336581 -116180456 + L1_Mur2 LINE L1 5196 5715 -479 5 839 273 229 59 24 chr6 33336758 33336843 -116180194 - L1MB8 LINE L1 -9 6169 6082 5 839 353 276 0 0 chr6 33336868 33336944 -116180093 - ID4_ SINE ID -2 81 6 5 839 295 267 98 39 chr6 33336947 33337150 -116179887 - L1MB8 LINE L1 -232 5946 5732 5 839 192 365 87 46 chr6 33338387 33338628 -116178409 + L3 LINE CR1 4130 4380 -109 5 839 1138 75 0 0 chr6 33339094 33339240 -116177797 - B1_Mus2 SINE Alu 0 147 2 5 839 21 0 0 0 chr6 33339248 33339269 -116177768 + AT_rich Low_complexity Low_complexity 1 21 0 5 839 2103 73 55 46 chr6 33339362 33339691 -116177346 - L1Md_F2 LINE L1 -2 6580 6249 5 839 994 205 16 16 chr6 33340012 33340205 -116176832 - ORR1D1 LTR MaLR -8 366 174 5 839 1804 203 30 35 chr6 33340178 33340223 -116176814 - MTB_Mm LTR MaLR -32 375 329 5 839 587 26 13 0 chr6 33340223 33340300 -116176737 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 5 839 1804 203 30 35 chr6 33340300 33340626 -116176411 - MTB_Mm LTR MaLR -79 328 6 5 839 704 164 110 0 chr6 33340653 33340799 -116176238 - ORR1D1 LTR MaLR -210 164 3 5 839 820 118 176 0 chr6 33342107 33342243 -116174794 + B2_Mm2 SINE B2 2 161 -34 5 839 189 0 0 0 chr6 33342243 33342264 -116174773 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5 839 1106 49 21 0 chr6 33342646 33342790 -116174247 + B1_Mus1 SINE Alu 2 148 0 5 839 432 309 66 0 chr6 33342925 33343061 -116173976 - ID_B1 SINE B4 0 224 80 5 839 255 322 52 143 chr6 33343267 33343553 -116173484 + MLT1M LTR MaLR 391 650 -22 5 839 824 207 0 57 chr6 33344028 33344187 -116172850 + B1_Mur4 SINE Alu 1 150 0 5 839 207 108 0 26 chr6 33344187 33344225 -116172812 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 839 895 243 66 28 chr6 33344407 33344749 -116172288 - RMER17C LTR ERVK -33 377 1 5 839 180 0 0 0 chr6 33345707 33345727 -116171310 + (ATG)n Simple_repeat Simple_repeat 3 22 0 5 839 651 142 0 34 chr6 33346244 33346361 -116170676 - L1Md_F2 LINE L1 -448 6134 6022 5 839 3837 58 2 2 chr6 33346361 33346846 -116170191 + L1Md_F2 LINE L1 6098 6582 0 5 839 1727 173 19 128 chr6 33349222 33349417 -116167620 - ORR1C2 LTR MaLR 0 384 197 5 839 396 0 0 0 chr6 33349417 33349461 -116167576 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 839 420 37 0 0 chr6 33349461 33349514 -116167523 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 839 1727 173 19 128 chr6 33349514 33349748 -116167289 - ORR1C2 LTR MaLR -188 196 2 5 839 24 32 0 0 chr6 33350410 33350441 -116166596 + AT_rich Low_complexity Low_complexity 1 31 0 5 839 248 358 45 11 chr6 33350592 33350770 -116166267 - L1MB7 LINE L1 -162 6022 5839 5 839 23 0 0 0 chr6 33350804 33350827 -116166210 + AT_rich Low_complexity Low_complexity 1 23 0 5 839 1439 350 61 24 chr6 33350945 33352034 -116165003 - Lx7 LINE L1 -158 7315 6171 6 839 435 308 53 40 chr6 33352066 33352218 -116164819 - RSINE1 SINE B4 -1 164 11 6 839 208 296 68 0 chr6 33352455 33352543 -116164494 + L2a LINE L2 3333 3426 0 6 839 205 182 0 0 chr6 33352987 33353031 -116164006 + A-rich Low_complexity Low_complexity 1 44 0 6 839 321 125 0 0 chr6 33353970 33354026 -116163011 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 839 289 123 15 15 chr6 33355938 33356004 -116161033 + A-rich Low_complexity Low_complexity 5 70 0 6 839 200 191 0 0 chr6 33356155 33356197 -116160840 + (TCTCTG)n Simple_repeat Simple_repeat 4 45 0 6 839 212 171 0 0 chr6 33356440 33356481 -116160556 + T-rich Low_complexity Low_complexity 3 43 0 6 839 623 194 42 35 chr6 33356505 33356649 -116160388 - B1_Mus1 SINE Alu -1 147 3 6 839 1183 274 57 43 chr6 33357579 33357832 -116159205 - MTE2b LTR MaLR -4 375 117 6 839 495 0 0 0 chr6 33357832 33357887 -116159150 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 839 1129 50 0 0 chr6 33357888 33358029 -116159008 - B1_Mus2 SINE Alu -6 141 1 6 839 1183 274 57 43 chr6 33358029 33358124 -116158913 - MTE2b LTR MaLR -263 116 20 6 839 232 145 42 28 chr6 33359217 33359288 -116157749 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 839 212 329 57 34 chr6 33360447 33360535 -116156502 - MER5A DNA MER1_type -9 180 91 6 839 212 77 0 25 chr6 33360624 33360664 -116156373 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 6 839 347 220 11 0 chr6 33360920 33361011 -116156026 + C-rich Low_complexity Low_complexity 3 94 0 6 839 669 331 14 14 chr6 33361469 33361757 -116155280 - B4A SINE B4 -3 289 2 6 839 3605 174 120 28 chr6 33363121 33363838 -116153199 + Lx5 LINE L1 6250 7032 -18 6 839 282 29 0 0 chr6 33363838 33363873 -116153164 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 6 839 233 338 97 39 chr6 33364186 33364392 -116152645 - MLT1C LTR MaLR -2 465 248 6 839 1370 136 169 43 chr6 33365617 33365714 -116151323 - Lx3B LINE L1 -756 6217 6126 6 839 1752 110 36 61 chr6 33365714 33366044 -116150993 - RLTRETN_Mm LTR ERVK 0 322 1 6 839 1370 136 169 43 chr6 33366044 33366247 -116150790 - Lx3B LINE L1 -848 6125 5879 6 839 1113 249 37 29 chr6 33366247 33366383 -116150654 + MTD LTR MaLR 58 196 -223 6 839 4288 33 0 10 chr6 33366383 33366920 -116150117 + L1Md_F2 LINE L1 6060 6582 0 6 839 1113 249 37 29 chr6 33366920 33367047 -116149990 + MTD LTR MaLR 197 326 -93 6 839 243 125 0 0 chr6 33367047 33367087 -116149950 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 839 269 357 0 0 chr6 33367313 33367397 -116149640 + PB1D10 SINE Alu 7 90 -27 6 839 312 94 0 0 chr6 33367403 33367456 -116149581 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 839 616 158 24 0 chr6 33367933 33368060 -116148977 + (TATATG)n Simple_repeat Simple_repeat 2 131 0 6 839 221 256 0 0 chr6 33368141 33368184 -116148853 + (CATA)n Simple_repeat Simple_repeat 1 43 0 6 839 317 196 152 20 chr6 33368359 33368458 -116148579 - L1MA4 LINE L1 -373 5927 5816 6 839 183 320 0 0 chr6 33368668 33368718 -116148319 + MER5B DNA MER1_type 126 175 -3 6 839 344 377 51 39 chr6 33369231 33369640 -116147397 - Lx8 LINE L1 -4 7469 7056 6 839 496 306 79 48 chr6 33369632 33369821 -116147216 - Lx8 LINE L1 -1084 6389 6195 6 839 1794 74 8 23 chr6 33369849 33370112 -116146925 - Lx3_Mus LINE L1 0 7009 6751 6 839 1198 247 157 8 chr6 33370506 33370875 -116146162 + MTD LTR MaLR 3 405 -14 6 839 439 239 14 7 chr6 33371368 33371507 -116145530 - Lx5 LINE L1 -810 6240 6101 6 839 186 43 0 0 chr6 33371780 33371803 -116145234 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 6 839 315 264 84 42 chr6 33372490 33372656 -116144381 - L1M6 LINE L1 -6313 183 11 6 839 702 289 26 0 chr6 33372960 33373154 -116143883 - B3 SINE B2 -13 203 5 6 839 486 0 0 0 chr6 33373262 33373316 -116143721 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 839 26 0 0 0 chr6 33374136 33374162 -116142875 + AT_rich Low_complexity Low_complexity 1 26 0 6 839 509 44 15 0 chr6 33374162 33374230 -116142807 + (TATG)n Simple_repeat Simple_repeat 2 70 0 6 839 256 238 0 45 chr6 33374230 33374296 -116142741 - B3 SINE B2 -29 187 125 6 839 307 328 79 8 chr6 33375106 33375232 -116141805 - B1F SINE Alu -14 135 1 6 839 229 273 22 33 chr6 33377966 33378057 -116138980 - RMER12 LTR ERVK -483 839 750 6 839 194 0 0 37 chr6 33378635 33378662 -116138375 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 6 839 1621 118 7 25 chr6 33383254 33383533 -116133504 - Lx LINE L1 0 6654 6381 6 839 1057 181 56 45 chr6 33384466 33384732 -116132305 - Lx9 LINE L1 -546 7098 6830 6 839 243 217 0 0 chr6 33384744 33384804 -116132233 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 6 839 237 185 60 24 chr6 33384876 33384959 -116132078 + Lx9 LINE L1 7554 7639 -5 6 839 2635 38 6 3 chr6 33384978 33385312 -116131725 + L1Md_F2 LINE L1 5281 5612 -2270 6 839 8204 37 1 2 chr6 33385312 33386296 -116130741 + L1Md_F2 LINE L1 5587 6569 -13 6 839 206 133 0 0 chr6 33387814 33387844 -116129193 + (T)n Simple_repeat Simple_repeat 1 30 0 6 839 210 300 17 0 chr6 33388048 33388074 -116128963 + MIRb SINE MIR 198 256 -10 6 839 213 156 0 0 chr6 33388074 33388106 -116128931 + L2b LINE L2 3328 3359 -16 6 839 234 301 29 96 chr6 33388761 33388897 -116128140 - LTR90B LTR LTR -45 751 625 6 839 381 43 0 0 chr6 33389706 33389753 -116127284 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 839 779 254 160 23 chr6 33389870 33390223 -116126814 - MTD LTR MaLR -20 399 1 6 839 34 24 0 0 chr6 33390371 33390412 -116126625 + AT_rich Low_complexity Low_complexity 1 41 0 6 839 236 366 58 22 chr6 33390482 33390619 -116126418 + MIR3 SINE MIR 66 207 -1 6 839 28 0 0 0 chr6 33392524 33392552 -116124485 + AT_rich Low_complexity Low_complexity 1 28 0 6 839 974 217 5 15 chr6 33392603 33392809 -116124228 - ORR1B2 LTR MaLR -8 359 156 6 839 831 184 30 129 chr6 33392792 33393082 -116123955 - ORR1B2 LTR MaLR -86 284 1 6 839 407 293 88 19 chr6 33393272 33393432 -116123605 + MER2 DNA MER2_type 85 255 -90 6 839 1084 80 0 0 chr6 33394639 33394777 -116122260 + B1_Mm SINE Alu 1 138 -9 6 839 315 0 0 0 chr6 33394777 33394812 -116122225 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 839 198 340 41 41 chr6 33394913 33395011 -116122026 + MIR SINE MIR 32 129 -133 6 839 180 200 0 0 chr6 33395149 33395199 -116121838 + CT-rich Low_complexity Low_complexity 1 50 0 6 839 339 25 0 0 chr6 33395226 33395266 -116121771 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 839 273 57 0 0 chr6 33395266 33395301 -116121736 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 839 21 0 0 0 chr6 33399039 33399060 -116117977 + AT_rich Low_complexity Low_complexity 1 21 0 6 839 294 141 14 72 chr6 33399241 33399310 -116117727 + RMER4B LTR ERVK 17 81 -385 6 839 2887 197 127 27 chr6 33399313 33400211 -116116826 - Lx4B LINE L1 -75 6925 5960 6 839 1162 62 14 0 chr6 33400211 33400355 -116116682 - B1_Mm SINE Alu 0 147 2 6 839 2887 181 124 28 chr6 33400355 33400413 -116116624 - Lx4B LINE L1 -1086 5972 5914 6 839 2327 199 58 18 chr6 33400414 33400797 -116116240 + RMER4B LTR ERVK 62 449 -136 6 839 225 0 0 0 chr6 33400797 33400822 -116116215 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 6 839 2327 199 58 18 chr6 33400822 33400935 -116116102 + RMER4B LTR ERVK 450 577 -8 6 839 23 54 0 0 chr6 33401125 33401162 -116115875 + AT_rich Low_complexity Low_complexity 1 37 0 6 839 338 312 72 43 chr6 33402263 33402471 -116114566 + L1ME3B LINE L1 4813 5026 -1120 6 839 366 279 24 78 chr6 33402480 33402647 -116114390 + L1ME3B LINE L1 5691 5848 -392 6 839 2987 97 144 41 chr6 33403412 33403926 -116113111 + RMER2 LTR ERV1 1 567 0 6 839 235 367 108 46 chr6 33404134 33404485 -116112552 + MLT1J LTR MaLR 125 497 -15 6 839 318 50 0 0 chr6 33406509 33406549 -116110488 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 6 839 225 269 26 0 chr6 33406557 33406635 -116110402 + (TATG)n Simple_repeat Simple_repeat 4 83 0 6 839 339 322 23 0 chr6 33406641 33406728 -116110309 - RSINE1 SINE B4 -3 162 74 6 839 23 0 0 0 chr6 33407030 33407053 -116109984 + AT_rich Low_complexity Low_complexity 1 23 0 6 839 810 31 0 0 chr6 33407588 33407685 -116109352 + (GA)n Simple_repeat Simple_repeat 2 98 0 6 839 827 282 75 122 chr6 33407689 33408166 -116108871 - MLT2B1 LTR ERVL -47 473 19 6 839 236 111 0 22 chr6 33408585 33408631 -116108406 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 6 839 244 281 0 0 chr6 33409644 33409708 -116107329 - B1_Mur1 SINE Alu -3 146 83 6 839 283 306 70 35 chr6 33409879 33409994 -116107043 + MLT1E1A LTR MaLR 57 175 -479 6 839 21 0 0 0 chr6 33410079 33410100 -116106937 + AT_rich Low_complexity Low_complexity 1 21 0 6 839 418 348 72 29 chr6 33410738 33411016 -116106021 + MLT1E1A LTR MaLR 335 680 0 6 839 2262 170 13 0 chr6 33411361 33411749 -116105288 - ORR1B1 LTR MaLR -1 393 1 6 839 727 122 8 8 chr6 33412776 33412908 -116104129 + (TCTCC)n Simple_repeat Simple_repeat 5 136 0 6 839 705 342 62 21 chr6 33412944 33413427 -116103610 - Lx8 LINE L1 -151 7322 6820 6 839 424 289 25 70 chr6 33413458 33413659 -116103378 - B3A SINE B2 -2 196 5 6 839 636 181 18 0 chr6 33413983 33414149 -116102888 + CT-rich Low_complexity Low_complexity 2 170 0 6 839 557 277 130 33 chr6 33414209 33414571 -116102466 - L1MB7 LINE L1 -358 5826 5430 6 839 23 0 0 0 chr6 33416059 33416082 -116100955 + AT_rich Low_complexity Low_complexity 1 23 0 6 839 429 20 0 0 chr6 33417354 33417404 -116099633 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 839 25 0 0 0 chr6 33417669 33417694 -116099343 + AT_rich Low_complexity Low_complexity 1 25 0 6 839 585 190 50 0 chr6 33419498 33419619 -116097418 - B1_Mur4 SINE Alu -1 149 23 6 839 1791 143 55 13 chr6 33419675 33419987 -116097050 + ORR1A2 LTR MaLR 1 325 -2 6 839 258 290 0 0 chr6 33420267 33420329 -116096708 + ID_B1 SINE B4 151 212 -12 6 839 212 294 0 0 chr6 33420331 33420382 -116096655 + CT-rich Low_complexity Low_complexity 3 53 0 6 839 3592 159 63 32 chr6 33420843 33421198 -116095839 + RMER6D LTR ERVK 1 370 -350 6 839 299 61 0 39 chr6 33421198 33421249 -116095788 + (TCTCTG)n Simple_repeat Simple_repeat 2 50 0 7 839 306 0 0 0 chr6 33421252 33421286 -116095751 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 839 3592 159 63 32 chr6 33421286 33421621 -116095416 + RMER6D LTR ERVK 371 717 -3 6 839 600 203 167 0 chr6 33421621 33421759 -116095278 + RMER6D LTR ERVK 560 720 0 7 839 611 60 12 0 chr6 33422544 33422628 -116094409 + (TTTC)n Simple_repeat Simple_repeat 3 87 0 7 104 688 239 378 38 chr6 33422967 33423414 -116093623 - MT2A LTR ERVL -2 599 1 7 840 1070 50 0 41 chr6 33423696 33423841 -116093196 + B1_Mus1 SINE Alu 2 140 -8 7 840 269 82 0 20 chr6 33424246 33424296 -116092741 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 7 840 27 0 0 0 chr6 33424463 33424490 -116092547 + AT_rich Low_complexity Low_complexity 1 27 0 7 840 3844 256 101 18 chr6 33425346 33426657 -116090380 - Lx7 LINE L1 0 7696 6277 7 840 23 54 0 0 chr6 33426689 33426726 -116090311 + AT_rich Low_complexity Low_complexity 1 37 0 7 840 192 135 0 0 chr6 33426742 33426779 -116090258 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 840 21 57 0 0 chr6 33426998 33427033 -116090004 + AT_rich Low_complexity Low_complexity 1 35 0 7 840 216 295 25 13 chr6 33427187 33427266 -116089771 + CT-rich Low_complexity Low_complexity 5 84 0 7 840 205 138 0 0 chr6 33428816 33428845 -116088192 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 7 840 530 165 0 10 chr6 33428850 33428954 -116088083 + C-rich Low_complexity Low_complexity 5 107 0 7 840 351 44 0 0 chr6 33429849 33429894 -116087143 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 7 840 1064 100 0 6 chr6 33429898 33430059 -116086978 + (TTTC)n Simple_repeat Simple_repeat 3 162 0 7 840 507 191 45 0 chr6 33430059 33430148 -116086889 - B1_Mur4 SINE Alu -50 100 8 7 840 60 37 0 0 chr6 33430230 33430311 -116086726 + AT_rich Low_complexity Low_complexity 1 81 0 7 840 1089 98 0 0 chr6 33430311 33430474 -116086563 + L1_Mus1 LINE L1 6405 6567 0 7 840 23 0 0 0 chr6 33431281 33431304 -116085733 + AT_rich Low_complexity Low_complexity 1 23 0 7 840 305 269 67 9 chr6 33432541 33432646 -116084391 - HAL1-3A_ME LINE L1 -846 2012 1902 7 840 1201 115 5 11 chr6 33432659 33432843 -116084194 + B2_Mm1a SINE B2 3 185 -8 7 840 299 186 0 33 chr6 33433098 33433159 -116083878 - RMER15 LTR ERVL -113 462 404 7 840 1622 237 59 27 chr6 33433247 33433685 -116083352 + RMER20A LTR ERVK 11 462 -54 7 840 250 324 92 6 chr6 33433761 33433935 -116083102 - Lx8 LINE L1 -358 7115 6927 7 840 797 144 30 8 chr6 33435651 33435784 -116081253 - B2_Mm1t SINE B2 0 193 58 7 840 234 0 0 0 chr6 33435784 33435810 -116081227 + (T)n Simple_repeat Simple_repeat 1 26 0 7 840 2234 50 0 0 chr6 33435935 33436213 -116080824 - L1Md_A LINE L1 0 6582 6305 7 840 226 0 0 0 chr6 33436222 33436251 -116080786 - B3 SINE B2 -185 31 3 7 840 339 198 35 47 chr6 33436308 33436329 -116080708 + ID_B1 SINE B4 64 118 -106 7 840 426 36 0 0 chr6 33436329 33436384 -116080653 + B1_Mus1 SINE Alu 1 55 -93 7 840 379 29 108 0 chr6 33436393 33436495 -116080542 + (CAGG)n Simple_repeat Simple_repeat 4 116 0 7 840 818 37 0 27 chr6 33436495 33436607 -116080430 + B1_Mm SINE Alu 39 147 0 7 840 241 171 0 54 chr6 33437072 33437118 -116079919 + T-rich Low_complexity Low_complexity 29 71 0 7 840 1148 61 0 7 chr6 33437118 33437266 -116079771 - B1_Mm SINE Alu 0 147 1 7 840 241 171 0 54 chr6 33437266 33437293 -116079744 + T-rich Low_complexity Low_complexity 3 28 0 7 840 371 318 51 38 chr6 33437307 33437464 -116079573 - RSINE1 SINE B4 -2 163 5 7 840 242 29 0 28 chr6 33437472 33437508 -116079529 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 840 431 363 45 62 chr6 33437581 33437760 -116079277 + B3A SINE B2 18 193 -5 7 840 420 306 75 0 chr6 33439307 33439441 -116077596 - RSINE1 SINE B4 -6 159 16 7 840 358 273 153 53 chr6 33439490 33439660 -116077377 - B3 SINE B2 -15 201 15 7 840 1465 221 51 25 chr6 33440069 33440420 -116076617 - MTC LTR MaLR -2 419 31 7 840 26326 13 0 0 chr6 33440420 33443590 -116073447 + L1Md_A LINE L1 2417 5586 -297 7 840 9020 5 0 0 chr6 33443590 33444586 -116072451 + L1Md_A LINE L1 5587 6582 0 7 840 4659 73 11 3 chr6 33444591 33445208 -116071829 + L1Md_F2 LINE L1 5884 6505 -77 7 840 1137 214 122 20 chr6 33445402 33445754 -116071283 - Lx9 LINE L1 0 7644 7257 7 840 225 83 0 0 chr6 33445806 33445842 -116071195 + (T)n Simple_repeat Simple_repeat 1 36 0 7 840 453 50 0 0 chr6 33448054 33448114 -116068923 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 840 24 53 0 0 chr6 33449122 33449160 -116067877 + AT_rich Low_complexity Low_complexity 1 38 0 7 840 1037 321 63 20 chr6 33449340 33449549 -116067488 - MT2A LTR ERVL -72 461 242 7 840 1203 76 0 0 chr6 33449549 33449864 -116067173 + (CAG)n Simple_repeat Simple_repeat 1 315 0 7 840 1037 321 63 20 chr6 33449864 33450095 -116066942 - MT2A LTR ERVL -292 241 2 7 840 24 0 0 0 chr6 33450483 33450507 -116066530 + AT_rich Low_complexity Low_complexity 1 24 0 7 840 4606 63 0 21 chr6 33450545 33451161 -116065876 - L1Md_F2 LINE L1 -2 6580 5978 7 840 530 276 143 23 chr6 33451296 33451792 -116065245 - L1_Rod LINE L1 -36 5811 5317 7 840 267 224 36 36 chr6 33451881 33451992 -116065045 + A-rich Low_complexity Low_complexity 3 113 0 7 840 261 0 0 0 chr6 33453256 33453285 -116063752 + (T)n Simple_repeat Simple_repeat 1 29 0 7 840 540 259 21 39 chr6 33454092 33454261 -116062776 - ID_B1 SINE B4 -60 232 65 7 840 504 322 73 67 chr6 33456561 33456874 -116060163 + MLT2C1 LTR ERVL 18 332 -65 7 840 238 206 0 14 chr6 33458148 33458217 -116058820 + CT-rich Low_complexity Low_complexity 1 68 0 7 840 405 102 0 0 chr6 33458217 33458276 -116058761 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 840 348 64 0 0 chr6 33458276 33458322 -116058715 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 840 583 283 0 21 chr6 33458328 33458469 -116058568 - RSINE1 SINE B4 -25 140 3 7 840 354 271 87 26 chr6 33458649 33458880 -116058157 + L1MA6 LINE L1 5987 6231 -69 7 840 324 102 0 0 chr6 33458880 33458929 -116058108 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 840 243 289 108 19 chr6 33458929 33458957 -116058080 + L1MA5 LINE L1 6236 6267 -33 7 840 687 25 0 0 chr6 33459660 33459741 -116057296 + (TTTTC)n Simple_repeat Simple_repeat 2 82 0 7 840 744 131 31 50 chr6 33459743 33459904 -116057133 - Lx2 LINE L1 -6 6991 6834 7 840 38 61 0 0 chr6 33460677 33460743 -116056294 + AT_rich Low_complexity Low_complexity 1 66 0 7 840 459 290 131 96 chr6 33461054 33461420 -116055617 - MTEa LTR MaLR 0 379 1 7 840 300 325 86 12 chr6 33462395 33462557 -116054480 + MIR SINE MIR 19 192 -70 7 840 995 153 36 36 chr6 33463788 33464012 -116053025 + Lx3C LINE L1 6748 6971 -5 7 840 23 0 0 0 chr6 33464109 33464132 -116052905 + AT_rich Low_complexity Low_complexity 1 23 0 7 840 21 36 0 0 chr6 33464341 33464369 -116052668 + AT_rich Low_complexity Low_complexity 1 28 0 7 840 507 82 0 0 chr6 33464412 33464485 -116052552 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 840 22 56 0 0 chr6 33465872 33465908 -116051129 + AT_rich Low_complexity Low_complexity 1 36 0 7 840 378 0 0 0 chr6 33468555 33468597 -116048440 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 840 694 264 157 31 chr6 33469662 33469955 -116047082 - ORR1E LTR MaLR -5 354 25 7 840 326 341 195 9 chr6 33470057 33470267 -116046770 - L1MC LINE L1 -2049 5833 5585 7 840 396 371 40 0 chr6 33470300 33470451 -116046586 - B3A SINE B2 -15 183 27 7 840 1158 55 7 7 chr6 33470759 33470907 -116046130 + B1_Mus1 SINE Alu 1 148 0 7 840 204 40 0 0 chr6 33471358 33471383 -116045654 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 7 840 260 337 128 64 chr6 33471579 33471798 -116045239 - Tigger8 DNA MER2_type -295 371 139 7 840 941 284 97 19 chr6 33473036 33473345 -116043692 + MTEa LTR MaLR 4 336 -43 7 840 26 30 0 0 chr6 33473999 33474032 -116043005 + AT_rich Low_complexity Low_complexity 1 33 0 7 840 412 48 32 0 chr6 33474044 33474107 -116042930 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 840 21 0 0 0 chr6 33474315 33474336 -116042701 + AT_rich Low_complexity Low_complexity 1 21 0 7 840 22 0 0 0 chr6 33474895 33474917 -116042120 + AT_rich Low_complexity Low_complexity 1 22 0 7 840 234 0 0 0 chr6 33475959 33475985 -116041052 + (A)n Simple_repeat Simple_repeat 1 26 0 7 840 189 0 0 0 chr6 33476062 33476083 -116040954 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 7 840 336 176 165 0 chr6 33476757 33476842 -116040195 - B1_Mur2 SINE Alu 0 149 51 7 840 238 91 21 83 chr6 33477584 33477632 -116039405 - RLTR25B LTR ERVK 0 1028 984 7 840 4146 181 79 76 chr6 33477710 33478256 -116038781 - RLTR25B LTR ERVK -1 1027 453 7 840 189 74 0 0 chr6 33478256 33478283 -116038754 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 840 4146 181 79 76 chr6 33478283 33478758 -116038279 - RLTR25B LTR ERVK -576 452 3 7 840 324 0 0 0 chr6 33479254 33479290 -116037747 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 840 4539 63 2 3 chr6 33479355 33479943 -116037094 - L1Md_F2 LINE L1 0 6582 5996 7 840 294 328 76 8 chr6 33481438 33481675 -116035362 - L1MB2 LINE L1 -52 6131 5879 7 840 35 54 0 0 chr6 33482525 33482581 -116034456 + AT_rich Low_complexity Low_complexity 1 56 0 7 840 415 280 102 48 chr6 33482908 33483280 -116033757 - L1MB2 LINE L1 -291 5880 5489 7 840 286 260 0 76 chr6 33484377 33484456 -116032581 - ID_B1 SINE B4 -67 157 85 7 840 469 227 10 10 chr6 33484454 33484552 -116032485 - B4A SINE B4 -12 280 183 7 840 27099 18 0 1 chr6 33484561 33487759 -116029278 + L1_Mm LINE L1 1673 4868 -1015 7 840 21 0 0 0 chr6 33488259 33488280 -116028757 + AT_rich Low_complexity Low_complexity 1 21 0 8 840 306 271 58 25 chr6 33488483 33488604 -116028433 - RSINE1 SINE B4 -29 136 12 8 840 236 279 9 96 chr6 33488827 33488942 -116028095 - 7SLRNA srpRNA srpRNA -180 134 30 8 840 492 18 0 0 chr6 33492675 33492732 -116024305 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 8 840 231 300 70 35 chr6 33492742 33492856 -116024181 - L2a LINE L2 -2 3424 3307 8 840 7461 174 36 24 chr6 33493466 33494315 -116022722 - L1_Mur2 LINE L1 -2196 3681 2822 8 840 1571 151 212 0 chr6 33494315 33494640 -116022397 + ORR1B1 LTR MaLR 1 394 0 8 840 6768 177 156 69 chr6 33494640 33496445 -116020592 + ORR1B1-int LTR MaLR 1 1963 0 8 840 1346 173 270 0 chr6 33496445 33496752 -116020285 + ORR1B1 LTR MaLR 1 390 -4 8 840 7461 174 36 24 chr6 33496752 33497507 -116019530 - L1_Mur2 LINE L1 -3056 2821 2058 8 840 426 157 0 0 chr6 33497516 33497618 -116019419 + (TG)n Simple_repeat Simple_repeat 2 103 0 8 840 249 368 26 0 chr6 33498564 33498681 -116018356 + MER3 DNA MER1_type 36 155 -54 8 840 815 251 146 12 chr6 33498678 33499020 -116018017 + Charlie5 DNA MER1_type 2236 2623 -1 8 840 348 24 0 0 chr6 33499105 33499146 -116017891 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 8 840 2787 194 7 29 chr6 33499161 33499707 -116017330 - Lx5 LINE L1 -43 7007 6474 8 840 1670 154 23 20 chr6 33499701 33500000 -116017037 - Lx4A LINE L1 -219 6839 6540 8 840 742 188 39 0 chr6 33501379 33501507 -116015530 + B1_Mur4 SINE Alu 11 143 -7 1 840 251 260 0 0 chr6 33501529 33501579 -116015458 + (ATGGTG)n Simple_repeat Simple_repeat 3 52 0 2 840 234 105 0 0 chr6 33503133 33503171 -116013866 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 840 237 336 97 1 chr6 33503842 33503946 -116013091 - L2a LINE L2 -19 3407 3291 4 840 816 276 29 29 chr6 33503966 33504276 -116012761 - L1MB7 LINE L1 -58 6126 5817 5 840 905 302 63 31 chr6 33504358 33504741 -116012296 - L2a LINE L2 -989 2430 2036 4 840 250 347 148 13 chr6 33504773 33504922 -116012115 + L2 LINE L2 98 266 -3153 6 840 443 155 10 0 chr6 33506483 33506586 -116010451 + CT-rich Low_complexity Low_complexity 2 105 0 7 840 405 0 0 0 chr6 33506587 33506632 -116010405 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 840 516 317 34 7 chr6 33506632 33506778 -116010259 - B3A SINE B2 -48 150 1 9 840 244 180 59 20 chr6 33507879 33507930 -116009107 - B1_Mur4 SINE Alu -78 72 20 1 840 268 371 0 0 chr6 33507940 33508056 -116008981 + (TG)n Simple_repeat Simple_repeat 2 117 0 1 840 6748 13 0 0 chr6 33508697 33509455 -116007582 + L1Md_T LINE L1 5825 6582 0 1 840 318 67 0 0 chr6 33509563 33509608 -116007429 + (A)n Simple_repeat Simple_repeat 1 45 0 1 840 25 31 0 0 chr6 33509831 33509863 -116007174 + AT_rich Low_complexity Low_complexity 1 32 0 1 840 266 193 67 11 chr6 33509870 33509959 -116007078 - L1MA5 LINE L1 -49 6251 6158 1 840 998 164 62 0 chr6 33510464 33510672 -116006365 - RMER1A Other Other -14 1016 796 1 840 237 65 0 0 chr6 33510921 33510952 -116006085 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 840 1936 193 106 17 chr6 33511046 33511520 -116005517 - RLTR20B3 LTR ERVK 0 577 62 1 840 387 0 0 0 chr6 33512016 33512059 -116004978 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 840 258 206 78 16 chr6 33513136 33513200 -116003837 + L2a LINE L2 3359 3426 0 2 840 319 364 62 24 chr6 33513537 33513871 -116003166 - L2a LINE L2 -265 3161 2823 2 840 26 64 0 0 chr6 33515138 33515185 -116001852 + AT_rich Low_complexity Low_complexity 1 47 0 2 840 2036 184 3 18 chr6 33515786 33516169 -116000868 - ORR1C1 LTR MaLR 0 378 2 2 840 477 50 0 0 chr6 33518706 33518766 -115998271 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 840 425 292 25 30 chr6 33519129 33519327 -115997710 + L1MB8 LINE L1 5652 5848 -330 2 840 455 205 0 0 chr6 33519796 33519874 -115997163 + B1_Mur4 SINE Alu 1 78 -72 2 840 6089 121 30 2 chr6 33522063 33523049 -115993988 - Lx2 LINE L1 -407 6590 5584 2 840 3016 41 2 65 chr6 33523049 33523463 -115993574 + RLTR10 LTR ERVK 1 388 -2 2 840 1862 142 3 30 chr6 33523463 33523507 -115993530 - Lx2 LINE L1 -300 5583 5541 2 840 1427 87 75 38 chr6 33523505 33523744 -115993293 + Lx LINE L1 6306 6553 -101 2 840 271 338 20 44 chr6 33524583 33524711 -115992326 - MIRb SINE MIR -24 244 113 3 840 423 56 0 0 chr6 33526209 33526263 -115990774 + (TTC)n Simple_repeat Simple_repeat 2 55 0 3 840 1178 61 0 0 chr6 33526264 33526411 -115990626 - B1_Mm SINE Alu 0 147 1 3 840 292 242 16 0 chr6 33527369 33527431 -115989606 - ID4_ SINE ID -19 64 2 3 840 315 0 0 0 chr6 33527856 33527891 -115989146 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 840 449 105 26 0 chr6 33528103 33528179 -115988858 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 3 840 215 366 0 0 chr6 33528220 33528291 -115988746 - ID4_ SINE ID -10 73 3 3 840 254 87 22 0 chr6 33528498 33528544 -115988493 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 840 624 306 68 23 chr6 33528709 33529056 -115987981 + Kanga1 DNA Tc2 1175 1374 -371 3 840 555 260 127 23 chr6 33529027 33529200 -115987837 - B3 SINE B2 0 216 26 3 840 414 0 0 0 chr6 33529324 33529370 -115987667 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 840 895 50 50 0 chr6 33529396 33529515 -115987522 - B2_Mm2 SINE B2 -70 125 1 4 840 487 213 220 9 chr6 33531233 33531471 -115985566 - L1MA6 LINE L1 -441 5859 5552 4 840 21 0 0 0 chr6 33531541 33531562 -115985475 + AT_rich Low_complexity Low_complexity 1 21 0 4 840 24 0 0 0 chr6 33532512 33532536 -115984501 + AT_rich Low_complexity Low_complexity 1 24 0 4 840 246 105 0 0 chr6 33533709 33533747 -115983290 + (T)n Simple_repeat Simple_repeat 1 38 0 4 840 967 41 0 0 chr6 33533747 33533869 -115983168 - B1_Mus1 SINE Alu 0 148 27 4 840 21 0 0 0 chr6 33534187 33534208 -115982829 + AT_rich Low_complexity Low_complexity 1 21 0 4 840 418 216 29 49 chr6 33534558 33534660 -115982377 + PB1D9 SINE Alu 5 104 -16 4 840 396 0 0 0 chr6 33534660 33534704 -115982333 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 840 21 36 0 0 chr6 33535445 33535473 -115981564 + AT_rich Low_complexity Low_complexity 1 28 0 5 840 231 296 14 14 chr6 33537148 33537220 -115979817 + CT-rich Low_complexity Low_complexity 1 72 0 5 840 217 371 11 11 chr6 33538336 33538426 -115978611 - B1_Mm SINE Alu -55 92 3 5 840 497 299 169 102 chr6 33539980 33540293 -115976744 - MTEa LTR MaLR -4 375 42 5 840 632 215 52 11 chr6 33543746 33543920 -115973117 + B3A SINE B2 2 182 -16 5 840 30 27 0 0 chr6 33543971 33544008 -115973029 + AT_rich Low_complexity Low_complexity 1 37 0 5 840 1292 96 11 6 chr6 33544010 33544189 -115972848 + B2_Mm2 SINE B2 2 181 -14 5 840 23 0 0 0 chr6 33544217 33544240 -115972797 + AT_rich Low_complexity Low_complexity 1 23 0 5 840 695 222 20 45 chr6 33545473 33545671 -115971366 - RMER1C Other Other -18 1324 1132 5 840 451 308 52 33 chr6 33545736 33546062 -115970975 - RMER1B Other Other -671 395 147 5 840 483 264 47 0 chr6 33547125 33547254 -115969783 + ID_B1 SINE B4 77 211 -13 5 840 231 61 0 0 chr6 33547805 33547838 -115969199 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 840 249 33 0 0 chr6 33547838 33547867 -115969170 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 840 578 365 61 0 chr6 33548686 33548883 -115968154 + B4A SINE B4 83 291 -1 6 840 264 348 167 31 chr6 33550073 33550301 -115966736 - L2b LINE L2 -11 3364 3106 6 840 737 138 0 7 chr6 33550611 33550750 -115966287 - Lx LINE L1 0 6654 6517 6 840 331 180 4 0 chr6 33550750 33550816 -115966221 + L1_Mus4 LINE L1 6205 6272 -382 6 840 225 0 0 0 chr6 33552275 33552300 -115964737 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 840 387 0 0 0 chr6 33552300 33552342 -115964695 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 840 511 300 32 55 chr6 33552752 33552997 -115964040 - ORR1E LTR MaLR -138 232 12 6 840 397 263 2 2 chr6 33553356 33553450 -115963587 + ID4_ SINE ID 7 100 -52 6 841 419 372 126 36 chr6 33554647 33555057 -115961980 + L2a LINE L2 2048 2495 -924 7 841 3039 130 124 54 chr6 33555057 33555628 -115961409 - RMER19C LTR ERVK 0 611 1 7 841 419 372 126 36 chr6 33555628 33555820 -115961217 + L2a LINE L2 2496 2708 -711 7 841 1179 62 0 0 chr6 33555820 33555966 -115961071 - B1_Mus2 SINE Alu 0 147 2 7 841 419 372 126 36 chr6 33555966 33556028 -115961009 + L2a LINE L2 2709 2772 -647 7 841 240 316 140 20 chr6 33556377 33556477 -115960560 + L2a LINE L2 3314 3425 -1 7 841 460 364 7 7 chr6 33557294 33557438 -115959599 - RSINE1 SINE B4 -19 146 3 7 841 332 325 180 33 chr6 33557494 33557551 -115959486 - B4A SINE B4 -11 281 226 7 841 459 0 0 0 chr6 33557551 33557602 -115959435 + (TATG)n Simple_repeat Simple_repeat 4 54 0 7 841 332 325 180 33 chr6 33557602 33557789 -115959248 - B4A SINE B4 -67 225 1 7 841 23 33 0 0 chr6 33558880 33558910 -115958127 + AT_rich Low_complexity Low_complexity 1 30 0 7 841 191 262 0 0 chr6 33559848 33559890 -115957147 - MIR SINE MIR -121 141 100 7 841 26 0 0 0 chr6 33561168 33561194 -115955843 + AT_rich Low_complexity Low_complexity 1 26 0 7 841 1214 54 0 0 chr6 33561390 33561537 -115955500 + B1_Mm SINE Alu 1 147 0 7 841 358 140 0 0 chr6 33561597 33561654 -115955383 + MamRep1161 DNA TcMar 44 100 -857 8 841 238 208 0 0 chr6 33562341 33562394 -115954643 + T-rich Low_complexity Low_complexity 1 53 0 8 841 4475 82 5 16 chr6 33562400 33563021 -115954016 - L1_Mus2 LINE L1 0 6566 5953 8 841 1804 113 59 13 chr6 33563345 33563650 -115953387 - L1_Mus3 LINE L1 -1 6637 6319 8 841 266 354 129 100 chr6 33564810 33565670 -115951367 - L2 LINE L2 -383 3036 2152 8 841 22 56 0 0 chr6 33566203 33566239 -115950798 + AT_rich Low_complexity Low_complexity 1 36 0 8 841 489 265 0 29 chr6 33568673 33568848 -115948189 + (TGG)n Simple_repeat Simple_repeat 2 171 0 8 841 27 0 0 0 chr6 33569614 33569641 -115947396 + AT_rich Low_complexity Low_complexity 1 27 0 8 841 22 35 0 0 chr6 33570005 33570034 -115947003 + AT_rich Low_complexity Low_complexity 1 29 0 8 841 449 129 0 11 chr6 33570071 33570165 -115946872 + (TC)n Simple_repeat Simple_repeat 2 94 0 8 841 325 117 26 43 chr6 33570666 33570782 -115946255 + (TTTG)n Simple_repeat Simple_repeat 2 115 0 9 841 195 69 0 0 chr6 33572374 33572403 -115944634 + (A)n Simple_repeat Simple_repeat 1 29 0 9 841 304 300 11 32 chr6 33573521 33573614 -115943423 + PB1 SINE Alu 1 91 -36 9 841 4489 92 9 27 chr6 33573881 33574552 -115942485 - L1_Mus3 LINE L1 -2 6636 5978 9 841 329 264 35 35 chr6 33574554 33574723 -115942314 + L1MD3 LINE L1 7715 7883 -112 9 841 1550 32 5 11 chr6 33575405 33575596 -115941441 + B2_Mm1t SINE B2 2 191 -2 9 841 6786 119 11 1 chr6 33576674 33578135 -115938902 - L1_Mus4 LINE L1 -2 6634 5157 9 841 4140 245 70 24 chr6 33578261 33579465 -115937572 - Lx6 LINE L1 -615 6845 5587 9 841 4817 184 27 37 chr6 33579470 33580946 -115936091 - L1_Mur3 LINE L1 -3559 2321 860 9 841 4228 177 53 17 chr6 33581252 33582113 -115934924 - Lx4A LINE L1 -41 7017 6126 9 841 1016 111 94 0 chr6 33582110 33582281 -115934756 - L1_Mur2 LINE L1 -150 5727 5541 1 841 2928 128 12 25 chr6 33582438 33582919 -115934118 - RLTR31B_Mm LTR ERVK -81 476 2 1 841 292 344 32 0 chr6 33583110 33583203 -115933834 + PB1D7 SINE Alu 20 115 -5 1 841 321 332 176 29 chr6 33583846 33584119 -115932918 - MER31A LTR ERV1 -22 463 151 1 841 210 286 129 0 chr6 33584203 33584273 -115932764 + PB1D10 SINE Alu 34 112 -5 1 841 464 253 34 82 chr6 33584298 33584459 -115932578 - MER34A LTR ERV1 -388 154 1 1 841 251 283 0 19 chr6 33584564 33584618 -115932419 + tRNA-Ala-GCY_ tRNA tRNA 16 68 -7 1 841 2541 195 57 40 chr6 33584844 33585693 -115931344 + RMER19B LTR ERVK 1 902 0 1 841 280 241 21 65 chr6 33585789 33585882 -115931155 - RMER19B LTR ERVK -160 742 654 1 841 224 273 14 70 chr6 33586253 33586324 -115930713 - MIRb SINE MIR -34 234 168 1 841 228 152 87 0 chr6 33586823 33586869 -115930168 - Lx2B LINE L1 -563 6437 6388 1 841 414 169 66 33 chr6 33586871 33586993 -115930044 + Lx2A1 LINE L1 6876 7001 -7 1 841 333 186 0 17 chr6 33587838 33587898 -115929139 - HAL1-3A_ME LINE L1 -823 2035 1977 1 841 958 316 21 24 chr6 33587922 33588295 -115928742 - Lx8 LINE L1 -175 7298 6927 1 841 273 136 45 0 chr6 33588348 33588414 -115928623 + CT-rich Low_complexity Low_complexity 2 70 0 1 841 21 0 0 0 chr6 33588475 33588496 -115928541 + AT_rich Low_complexity Low_complexity 1 21 0 1 841 401 309 48 7 chr6 33589961 33590117 -115926920 + B3A SINE B2 20 189 -27 1 841 361 341 108 57 chr6 33591119 33591470 -115925567 - MLT1A LTR MaLR 0 374 6 1 841 556 283 29 14 chr6 33591746 33591886 -115925151 - RSINE1 SINE B4 -21 144 3 1 841 223 280 51 39 chr6 33591942 33592020 -115925017 - BC1_Mm scRNA scRNA -72 80 2 1 841 253 365 10 0 chr6 33592033 33592129 -115924908 - U6 snRNA snRNA -10 97 1 1 841 198 102 16 48 chr6 33593108 33593170 -115923867 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 1 841 268 349 9 9 chr6 33593838 33593945 -115923092 + MIR SINE MIR 73 179 -83 1 841 264 250 20 20 chr6 33593950 33593991 -115923046 + polypurine Low_complexity Low_complexity 1 40 0 1 841 513 32 0 0 chr6 33593991 33594054 -115922983 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 841 264 250 20 20 chr6 33594054 33594114 -115922923 + polypurine Low_complexity Low_complexity 41 102 0 1 841 21 0 0 0 chr6 33595667 33595688 -115921349 + AT_rich Low_complexity Low_complexity 1 21 0 1 841 898 287 100 20 chr6 33596121 33596579 -115920458 + L1MB5 LINE L1 5569 6063 -111 1 841 227 375 35 35 chr6 33596862 33597003 -115920034 - L2b LINE L2 -19 3356 3216 1 841 327 246 304 0 chr6 33597264 33597435 -115919602 - URR1B DNA MER1_type -2 223 1 1 841 705 284 91 15 chr6 33597551 33597748 -115919289 - ID_B1 SINE B4 -6 218 7 1 841 381 43 0 0 chr6 33597975 33598022 -115919015 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 841 237 132 0 0 chr6 33598022 33598060 -115918977 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 1 841 2542 35 3 6 chr6 33598060 33598373 -115918664 - L1_Mus1 LINE L1 0 6567 6256 1 841 610 222 56 0 chr6 33598564 33598690 -115918347 - B1F SINE Alu 0 149 17 1 841 21 0 0 0 chr6 33598863 33598884 -115918153 + AT_rich Low_complexity Low_complexity 1 21 0 1 841 231 301 108 0 chr6 33598899 33598982 -115918055 + PB1D7 SINE Alu 14 105 -15 1 841 354 325 58 16 chr6 33599153 33599344 -115917693 + L1M4 LINE L1 5626 5824 -350 1 841 183 49 73 0 chr6 33600204 33600245 -115916792 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 841 8305 17 0 0 chr6 33600423 33601993 -115915044 - L1Md_A LINE L1 -1 6581 5012 1 841 183 379 74 0 chr6 33602883 33602978 -115914059 + MIR SINE MIR 14 115 -147 1 841 5594 52 4 0 chr6 33603468 33604156 -115912881 - L1_Mus1 LINE L1 -1 6566 5876 1 841 21 0 0 0 chr6 33604276 33604297 -115912740 + AT_rich Low_complexity Low_complexity 1 21 0 1 841 354 133 33 0 chr6 33604525 33604615 -115912422 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 1 841 413 133 12 62 chr6 33606310 33606390 -115910647 + LTR40b LTR ERVL 377 452 -10 1 841 217 333 62 62 chr6 33608251 33608395 -115908642 - L2a LINE L2 0 3426 3283 1 841 285 366 49 0 chr6 33608738 33608861 -115908176 + MER3 DNA MER1_type 1 129 -80 1 841 28166 24 0 0 chr6 33609001 33615431 -115901606 - L1Md_T LINE L1 0 6585 59 1 841 351 333 224 5 chr6 33615694 33616123 -115900914 - L2a LINE L2 -783 2636 2114 1 841 269 262 30 45 chr6 33620128 33620260 -115896777 - L1MB3 LINE L1 -1 6182 6053 1 841 210 71 0 0 chr6 33620654 33620682 -115896355 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 841 560 40 0 13 chr6 33621863 33621939 -115895098 + (TTGG)n Simple_repeat Simple_repeat 3 77 0 1 841 449 254 30 43 chr6 33621969 33622153 -115894884 - ORR1D2 LTR MaLR -68 306 121 1 841 209 298 81 23 chr6 33622813 33622899 -115894138 - MER5B DNA MER1_type -9 169 79 1 841 189 0 0 0 chr6 33624028 33624049 -115892988 + (TTG)n Simple_repeat Simple_repeat 3 23 0 1 841 186 43 0 0 chr6 33624151 33624174 -115892863 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 841 439 346 162 27 chr6 33625338 33625671 -115891366 - MLT2F LTR ERVL -44 619 242 1 841 4007 119 19 2 chr6 33625860 33626451 -115890586 - MT2B LTR ERVL 0 601 1 1 841 381 43 0 0 chr6 33626543 33626590 -115890447 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 841 231 312 126 18 chr6 33626720 33626831 -115890206 - Tigger10 DNA Tigger -694 1149 1027 1 841 356 359 95 23 chr6 33626939 33627244 -115889793 - Tigger10 DNA Tigger -986 857 531 1 841 327 49 0 0 chr6 33627474 33627515 -115889522 + (TTAG)n Simple_repeat Simple_repeat 2 42 0 1 841 201 107 33 82 chr6 33627585 33627646 -115889391 + (CCTG)n Simple_repeat Simple_repeat 3 60 0 1 841 180 0 0 0 chr6 33627724 33627744 -115889293 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 841 297 333 223 4 chr6 33627842 33628071 -115888966 + MLT1L LTR MaLR 235 513 -97 1 841 276 287 87 0 chr6 33628439 33628554 -115888483 + LTR33B LTR ERVL 353 477 -26 1 841 1481 285 71 49 chr6 33628935 33629628 -115887409 - Lx9 LINE L1 -208 7436 6729 1 841 963 261 100 58 chr6 33629683 33630151 -115886886 + Lx9 LINE L1 6051 6694 -950 1 841 1441 63 21 0 chr6 33630424 33630614 -115886423 + B2_Mm2 SINE B2 2 195 0 1 841 241 247 170 11 chr6 33633821 33633915 -115883122 - PB1D10 SINE Alu -8 109 1 1 841 241 329 141 83 chr6 33634043 33634199 -115882838 - B4A SINE B4 -127 165 1 1 841 279 0 0 0 chr6 33635112 33635143 -115881894 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 841 181 234 62 15 chr6 33635585 33635650 -115881387 - MIR SINE MIR -63 145 78 1 841 408 242 0 21 chr6 33637074 33637171 -115879866 - MT2A LTR ERVL -438 95 1 1 841 309 325 141 26 chr6 33637433 33637667 -115879370 - MER68 LTR ERVL -280 283 23 1 841 1637 165 51 28 chr6 33638982 33639375 -115877662 - RMER17C LTR ERVK -8 402 1 1 841 1191 48 0 0 chr6 33639930 33640077 -115876960 + B1_Mus2 SINE Alu 1 147 0 1 841 207 0 0 0 chr6 33640077 33640100 -115876937 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 841 334 218 33 0 chr6 33642733 33642837 -115874200 + ORR1B2 LTR MaLR 39 122 -256 1 841 773 228 56 71 chr6 33643254 33643523 -115873514 - RLTR14 LTR ERV1 -34 348 84 1 841 558 237 8 0 chr6 33643518 33643636 -115873401 - RLTR14 LTR ERV1 -263 119 1 1 841 597 294 48 26 chr6 33643845 33644072 -115872965 - RLTR14-int LTR ERV1 -167 5150 4919 1 841 280 326 11 0 chr6 33644777 33644872 -115872165 - PB1D9 SINE Alu -23 97 2 1 841 24 0 0 0 chr6 33645054 33645078 -115871959 + AT_rich Low_complexity Low_complexity 1 24 0 1 841 850 63 125 16 chr6 33645084 33645212 -115871825 + B1_Mus1 SINE Alu 6 147 -1 1 841 216 301 22 78 chr6 33645564 33645654 -115871383 + MIR3 SINE MIR 101 185 -23 1 841 989 119 0 20 chr6 33646222 33646368 -115870669 + B1_Mus1 SINE Alu 6 148 0 1 841 186 43 0 0 chr6 33646384 33646407 -115870630 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 841 369 0 0 0 chr6 33646583 33646624 -115870413 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 1 841 735 29 10 19 chr6 33646647 33646751 -115870286 + (GAGAA)n Simple_repeat Simple_repeat 4 106 0 1 841 450 0 0 0 chr6 33646751 33646800 -115870237 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 1 841 269 298 47 23 chr6 33647080 33647166 -115869871 - MIR SINE MIR -172 96 9 1 841 342 0 0 0 chr6 33647320 33647358 -115869679 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 841 1029 286 88 6 chr6 33647726 33648057 -115868980 + MTEb LTR MaLR 20 377 -2 1 841 2033 95 17 0 chr6 33648096 33648391 -115868646 - L1_Mus3 LINE L1 -80 5803 5504 1 841 6245 73 11 2 chr6 33648391 33649211 -115867826 + L1_Mus3 LINE L1 5800 6626 -12 1 841 2800 102 12 2 chr6 33651246 33651649 -115865388 + MTB_Mm LTR MaLR 1 407 0 1 841 323 298 60 30 chr6 33651709 33651941 -115865096 + L1ME4a LINE L1 5620 5858 -266 1 841 998 169 71 10 chr6 33653424 33653621 -115863416 + ORR1D1 LTR MaLR 1 209 -165 1 841 205 246 0 0 chr6 33653622 33653667 -115863370 + T-rich Low_complexity Low_complexity 17 61 0 1 841 622 91 20 0 chr6 33653667 33653766 -115863271 - Lx3C LINE L1 -2 6974 6874 1 841 205 246 0 0 chr6 33653766 33653781 -115863256 + T-rich Low_complexity Low_complexity 2 16 0 1 841 4733 47 5 0 chr6 33653784 33654361 -115862676 - L1Md_F3 LINE L1 -14 6570 5991 1 841 487 189 222 7 chr6 33654387 33654531 -115862506 + ORR1D1 LTR MaLR 200 374 0 1 841 323 345 26 9 chr6 33655116 33655230 -115861807 - PB1D10 SINE Alu -1 116 1 1 841 401 0 20 0 chr6 33655610 33655659 -115861378 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 841 246 128 0 0 chr6 33656498 33656537 -115860500 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 2 841 334 267 119 0 chr6 33656538 33656639 -115860398 - PB1D10 SINE Alu -7 113 1 2 841 213 320 61 43 chr6 33658207 33658370 -115858667 - L2c LINE L2 -54 3333 3168 2 841 200 229 0 0 chr6 33659506 33659541 -115857496 - MIRb SINE MIR -208 60 26 2 841 285 283 0 0 chr6 33659827 33659887 -115857150 + ID4 SINE ID 24 83 0 2 841 241 349 73 27 chr6 33659899 33660049 -115856988 + MER46C DNA MER2_type 11 167 -171 2 841 270 0 0 0 chr6 33660697 33660727 -115856310 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 841 357 43 0 0 chr6 33660727 33660773 -115856264 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 841 958 68 14 0 chr6 33660793 33660941 -115856096 + (GAAA)n Simple_repeat Simple_repeat 4 153 0 2 841 180 146 0 127 chr6 33661052 33661107 -115855930 - L2c LINE L2 -138 3249 3202 2 841 186 43 0 0 chr6 33663138 33663161 -115853876 + (T)n Simple_repeat Simple_repeat 1 23 0 2 841 264 319 111 8 chr6 33663315 33663432 -115853605 - MIR3 SINE MIR -6 202 74 2 841 5833 162 20 48 chr6 33663753 33664948 -115852089 - Lx2B LINE L1 -14 6986 5826 2 841 1134 254 65 62 chr6 33664999 33665339 -115851698 + MTD LTR MaLR 19 375 -4 2 841 305 287 94 33 chr6 33665499 33665679 -115851358 - ORR1D1 LTR MaLR -177 197 7 2 841 685 125 70 18 chr6 33667538 33667652 -115849385 + PB1D9 SINE Alu 1 120 0 2 841 340 309 74 59 chr6 33667775 33667978 -115849059 + MIR SINE MIR 27 232 -30 2 841 294 323 147 18 chr6 33669911 33670081 -115846956 - LTR16B1 LTR ERVL -262 218 27 2 841 425 299 32 83 chr6 33670413 33670570 -115846467 + B4A SINE B4 13 161 -131 2 841 1804 128 176 3 chr6 33670575 33670888 -115846149 + MTC LTR MaLR 1 367 -54 2 841 194 288 193 35 chr6 33672355 33672470 -115844567 + MIRb SINE MIR 21 157 -111 2 841 314 290 0 0 chr6 33672476 33672538 -115844499 + PB1D10 SINE Alu 5 66 -51 2 841 894 184 0 0 chr6 33672727 33672906 -115844131 + (TA)n Simple_repeat Simple_repeat 1 179 0 2 841 305 243 200 0 chr6 33672957 33673027 -115844010 - B3 SINE B2 -69 147 64 2 841 243 233 0 0 chr6 33673130 33673173 -115843864 - B2_Mm2 SINE B2 -147 48 6 2 841 247 282 28 0 chr6 33675328 33675399 -115841638 + ID4_ SINE ID 1 73 -10 2 841 450 101 0 0 chr6 33676029 33676098 -115840939 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 841 298 256 24 8 chr6 33676100 33676226 -115840811 + Lx9 LINE L1 7517 7644 0 2 841 249 294 58 12 chr6 33676555 33676641 -115840396 - MIR SINE MIR 0 262 173 2 841 311 327 125 0 chr6 33676679 33676847 -115840190 - MLT1B LTR MaLR 0 390 202 2 841 254 179 69 69 chr6 33678182 33678254 -115838783 + LFSINE_Vert SINE SINE 388 459 0 2 841 21 0 0 0 chr6 33678917 33678938 -115838099 + AT_rich Low_complexity Low_complexity 1 21 0 2 841 465 314 53 72 chr6 33679243 33679452 -115837585 - B4A SINE B4 -6 286 82 2 841 547 303 26 13 chr6 33679436 33679590 -115837447 - B4A SINE B4 -56 236 81 2 841 828 174 69 101 chr6 33679614 33679902 -115837135 - Lx7 LINE L1 0 7696 7418 2 841 823 213 37 0 chr6 33679895 33680059 -115836978 - Lx7 LINE L1 -1020 6676 6507 2 841 379 184 118 0 chr6 33680086 33680162 -115836875 - B4A SINE B4 -207 85 1 2 841 234 0 0 0 chr6 33681437 33681463 -115835574 + (CTG)n Simple_repeat Simple_repeat 1 26 0 2 841 693 0 0 0 chr6 33681463 33681540 -115835497 + (TTC)n Simple_repeat Simple_repeat 3 79 0 2 841 1999 70 0 20 chr6 33683152 33683401 -115833636 - L1_Mus2 LINE L1 -1 6565 6322 2 841 355 285 159 16 chr6 33684747 33684936 -115832101 - L2a LINE L2 -9 3417 3202 2 842 34 0 0 0 chr6 33685626 33685660 -115831377 + AT_rich Low_complexity Low_complexity 1 34 0 2 842 628 294 65 42 chr6 33685936 33686199 -115830838 + MamRep137 DNA TcMar? 135 403 -41 2 842 4484 77 20 23 chr6 33687022 33687631 -115829406 - Lx3_Mus LINE L1 -8 7001 6395 2 842 967 105 7 0 chr6 33687631 33687784 -115829253 - Lx3_Mus LINE L1 -783 6226 6073 2 842 3967 185 27 27 chr6 33690683 33691460 -115825577 + Lx2B LINE L1 6216 6992 -8 2 842 1072 231 88 58 chr6 33691904 33692300 -115824737 - Lx8 LINE L1 -5 7468 7061 2 842 217 289 0 50 chr6 33692738 33692818 -115824219 - L2c LINE L2 -54 3333 3258 2 842 2070 105 3 74 chr6 33693650 33694001 -115823036 + IAPLTR1a_Mm LTR ERVK 1 326 -11 2 842 33216 12 4 24 chr6 33694002 33697795 -115819242 + IAPEz-int LTR ERVK 1 3717 -2764 2 842 9146 24 4 0 chr6 33697794 33698826 -115818211 + IAPEz-int LTR ERVK 5446 6481 0 2 842 2067 98 3 74 chr6 33698826 33699177 -115817860 + IAPLTR1a_Mm LTR ERVK 1 326 -11 2 842 348 287 10 31 chr6 33699283 33699380 -115817657 + MIR SINE MIR 6 100 -162 2 842 1255 62 0 0 chr6 33701081 33701225 -115815812 + B1_Mus1 SINE Alu 1 144 -4 2 842 22 0 0 0 chr6 33701233 33701255 -115815782 + AT_rich Low_complexity Low_complexity 1 22 0 2 842 23 0 0 0 chr6 33701504 33701527 -115815510 + AT_rich Low_complexity Low_complexity 1 23 0 2 842 195 0 27 54 chr6 33702108 33702145 -115814892 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 842 216 67 0 0 chr6 33702249 33702279 -115814758 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 842 552 238 89 62 chr6 33703056 33703347 -115813690 - L1MA8 LINE L1 -26 6265 5967 2 842 7614 98 20 3 chr6 33704571 33705781 -115811256 - Lx LINE L1 -1 6653 5426 2 842 205 204 0 22 chr6 33706314 33706359 -115810678 + T-rich Low_complexity Low_complexity 5 48 0 2 842 1535 299 152 39 chr6 33706371 33707306 -115809731 - Tigger6a DNA MER2_type 0 1083 43 2 842 27 0 0 0 chr6 33707336 33707363 -115809674 + AT_rich Low_complexity Low_complexity 1 27 0 2 842 26 50 0 0 chr6 33707460 33707500 -115809537 + AT_rich Low_complexity Low_complexity 1 40 0 2 842 795 226 63 42 chr6 33708221 33708410 -115808627 - B3 SINE B2 -23 193 1 2 842 228 299 18 61 chr6 33708446 33708560 -115808477 + L3b LINE CR1 161 269 -213 2 842 743 174 82 22 chr6 33709100 33709235 -115807802 + B1_Mur1 SINE Alu 5 147 -2 2 842 249 342 112 19 chr6 33709847 33710008 -115807029 + LTR33 LTR ERVL 289 464 -51 2 842 240 360 102 24 chr6 33711218 33711423 -115805614 - MIR SINE MIR -21 241 21 2 842 452 279 153 31 chr6 33711434 33711579 -115805458 + MER5C DNA MER1_type 11 174 -139 2 842 405 0 0 0 chr6 33711579 33711624 -115805413 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 842 452 279 153 31 chr6 33711624 33711700 -115805337 + MER5C DNA MER1_type 175 258 -55 2 842 25 0 0 0 chr6 33711898 33711923 -115805114 + AT_rich Low_complexity Low_complexity 1 25 0 2 842 461 314 25 0 chr6 33711929 33712047 -115804990 - RSINE1 SINE B4 0 165 45 2 842 183 265 61 0 chr6 33712813 33712862 -115804175 + MER5A DNA MER1_type 39 90 -99 2 842 302 393 52 0 chr6 33713720 33713893 -115803144 + MIRb SINE MIR 31 212 -56 2 842 486 307 49 85 chr6 33714303 33714467 -115802570 + RSINE1 SINE B4 2 159 -6 2 842 295 293 97 26 chr6 33714643 33714797 -115802240 - MLT1C LTR MaLR -244 223 59 2 842 198 0 0 0 chr6 33715364 33715386 -115801651 + (A)n Simple_repeat Simple_repeat 1 22 0 2 842 3964 71 6 0 chr6 33715821 33716298 -115800739 - Lx3_Mus LINE L1 0 7009 6530 2 842 498 320 109 47 chr6 33716685 33717023 -115800014 - ORR1E LTR MaLR 0 359 1 2 842 1226 61 0 20 chr6 33717278 33717428 -115799609 + B1_Mm SINE Alu 1 147 0 2 842 26 0 0 0 chr6 33717428 33717454 -115799583 + AT_rich Low_complexity Low_complexity 1 26 0 2 842 321 26 0 0 chr6 33717774 33717812 -115799225 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2 842 24 0 0 0 chr6 33718062 33718086 -115798951 + AT_rich Low_complexity Low_complexity 1 24 0 2 842 22 0 0 0 chr6 33720610 33720632 -115796405 + AT_rich Low_complexity Low_complexity 1 22 0 2 842 28 71 0 0 chr6 33720713 33720769 -115796268 + AT_rich Low_complexity Low_complexity 1 56 0 2 842 737 266 44 16 chr6 33720914 33721209 -115795828 - L1MA5A LINE L1 -376 5921 5594 2 842 24 53 0 0 chr6 33721857 33721895 -115795142 + AT_rich Low_complexity Low_complexity 1 38 0 2 842 22 0 0 0 chr6 33722287 33722309 -115794728 + AT_rich Low_complexity Low_complexity 1 22 0 2 842 387 0 0 0 chr6 33722620 33722663 -115794374 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 842 203 303 0 28 chr6 33723370 33723457 -115793580 - L2b LINE L2 -7 3380 3299 2 842 440 352 75 15 chr6 33724918 33725117 -115791920 - MER58A DNA MER1_type -13 211 1 2 842 501 17 0 0 chr6 33725344 33725402 -115791635 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 842 30947 84 10 7 chr6 33726058 33731429 -115785608 + L1Md_F2 LINE L1 208 5586 -297 2 842 7784 59 1 8 chr6 33731430 33732424 -115784613 + L1Md_F2 LINE L1 5588 6574 -8 2 842 1029 97 0 0 chr6 33732424 33732569 -115784468 - B2_Mm2 SINE B2 -49 146 2 2 842 227 139 0 0 chr6 33732602 33732645 -115784392 - Lx8 LINE L1 -5 7468 7426 2 842 341 277 61 87 chr6 33733157 33733260 -115783777 - PB1D10 SINE Alu -49 101 1 2 842 4658 36 7 4 chr6 33733363 33733924 -115783113 + L1Md_T LINE L1 6019 6581 -1 2 842 402 21 0 0 chr6 33734552 33734599 -115782438 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 842 1266 249 45 59 chr6 33734840 33735195 -115781842 + ORR1E LTR MaLR 6 355 -4 2 842 1973 319 137 11 chr6 33735675 33736740 -115780297 - Lx8 LINE L1 -179 7294 6096 2 842 396 0 0 0 chr6 33736768 33736812 -115780225 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 842 186 292 84 63 chr6 33737797 33737892 -115779145 + MIRc SINE MIR 15 111 -157 2 842 341 330 178 16 chr6 33738115 33738306 -115778731 + Tigger5 DNA MER2_type 21 242 -2164 2 842 239 314 45 75 chr6 33738411 33738545 -115778492 - MER58A DNA MER1_type -89 135 6 2 842 1022 324 52 40 chr6 33739516 33739941 -115777096 - MER63B DNA AcHobo -6 430 1 3 842 228 350 18 55 chr6 33739952 33740061 -115776976 + L2a LINE L2 3273 3377 -49 3 842 213 302 226 12 chr6 33741886 33742050 -115774987 - L3 LINE CR1 -732 3757 3559 3 842 314 342 66 51 chr6 33745000 33745197 -115771840 + MIRb SINE MIR 15 214 -54 3 842 224 258 15 0 chr6 33745197 33745263 -115771774 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 842 468 95 0 0 chr6 33746066 33746140 -115770897 + L1Md_F2 LINE L1 6507 6580 -2 3 842 198 0 0 0 chr6 33747725 33747747 -115769290 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 3 842 416 370 0 28 chr6 33747804 33747946 -115769091 - ID_B1 SINE B4 -1 223 86 3 842 332 300 0 0 chr6 33748793 33748873 -115768164 - ID4 SINE ID -2 81 2 3 842 415 319 9 0 chr6 33749984 33750097 -115766940 + PB1D10 SINE Alu 4 117 0 3 842 212 250 71 0 chr6 33750126 33750182 -115766855 + ID4 SINE ID 8 67 -16 3 842 832 318 5 18 chr6 33750215 33750433 -115766604 + B4A SINE B4 6 220 -72 3 842 607 303 77 78 chr6 33751653 33752045 -115764992 + MTEa LTR MaLR 2 379 0 3 842 545 329 127 6 chr6 33752079 33752438 -115764599 + MER63B DNA AcHobo 35 434 -2 3 842 347 337 99 28 chr6 33752718 33752929 -115764108 + MIR SINE MIR 13 238 -24 3 842 285 312 115 0 chr6 33752967 33753063 -115763974 + PB1D10 SINE Alu 1 107 -10 3 842 27 0 0 0 chr6 33753205 33753232 -115763805 + AT_rich Low_complexity Low_complexity 1 27 0 3 842 249 292 77 0 chr6 33753398 33753463 -115763574 - ID4_ SINE ID -13 70 1 3 842 665 10 227 0 chr6 33754393 33754490 -115762547 - L1Md_A LINE L1 0 6582 6464 3 842 549 0 0 0 chr6 33754527 33754588 -115762449 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 842 26 0 0 0 chr6 33755402 33755428 -115761609 + AT_rich Low_complexity Low_complexity 1 26 0 3 842 213 287 101 22 chr6 33756182 33756271 -115760766 + MIRc SINE MIR 110 205 -63 3 842 343 318 52 90 chr6 33756829 33757040 -115759997 + MIRb SINE MIR 16 218 -50 3 842 3715 74 32 8 chr6 33758429 33758921 -115758116 + L1_Mus1 LINE L1 6064 6567 0 3 842 216 0 0 0 chr6 33760024 33760048 -115756989 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 842 188 219 0 0 chr6 33760459 33760491 -115756546 - L2c LINE L2 -21 3354 3323 3 842 185 374 62 28 chr6 33760692 33760871 -115756166 - L2 LINE L2 -349 3070 2886 3 842 202 205 0 0 chr6 33761279 33761318 -115755719 - L2c LINE L2 -99 3288 3250 3 842 236 330 52 9 chr6 33761763 33761879 -115755158 - MER103 DNA DNA -44 122 2 3 842 21 36 0 0 chr6 33761887 33761915 -115755122 + AT_rich Low_complexity Low_complexity 1 28 0 3 842 211 28 56 0 chr6 33762121 33762157 -115754880 + (CCCCAG)n Simple_repeat Simple_repeat 6 43 0 3 842 534 325 36 51 chr6 33765146 33765174 -115751863 + ID_B1 SINE B4 65 176 -116 3 842 251 356 90 36 chr6 33765174 33765340 -115751697 + 7SLRNA srpRNA srpRNA 8 182 -132 3 842 534 325 36 51 chr6 33765340 33765363 -115751674 + ID_B1 SINE B4 177 278 -14 3 842 403 280 141 41 chr6 33766881 33767272 -115749765 + Charlie2b DNA MER1_type 2146 2575 -207 3 842 259 165 204 10 chr6 33767325 33767423 -115749614 - L1MA7 LINE L1 -45 6246 6130 3 842 622 183 12 118 chr6 33767465 33767626 -115749411 - B1_Mus2 SINE Alu -1 146 3 3 842 468 0 0 0 chr6 33767695 33767747 -115749290 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 842 357 254 138 36 chr6 33767823 33768019 -115749018 + Charlie2b DNA MER1_type 2567 2782 0 3 842 21 89 0 0 chr6 33769436 33769492 -115747545 + AT_rich Low_complexity Low_complexity 1 56 0 3 842 483 18 0 0 chr6 33769795 33769851 -115747186 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 842 237 65 0 0 chr6 33769851 33769881 -115747156 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 842 245 369 45 0 chr6 33770665 33770776 -115746261 - L3 LINE CR1 -727 3762 3647 3 842 182 91 0 29 chr6 33771275 33771309 -115745728 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 3 842 261 248 218 24 chr6 33771312 33771436 -115745601 - B1F1 SINE Alu 0 149 2 3 842 205 258 47 131 chr6 33771607 33771714 -115745323 - L2 LINE L2 -974 2445 2348 3 842 1069 116 0 0 chr6 33771744 33771891 -115745146 + B1_Mus2 SINE Alu 1 147 0 3 842 198 0 0 0 chr6 33771891 33771913 -115745124 + (A)n Simple_repeat Simple_repeat 1 22 0 3 842 405 0 0 0 chr6 33771913 33771958 -115745079 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 3 842 258 327 140 96 chr6 33771958 33772686 -115744351 - L2 LINE L2 -1051 2368 1609 3 842 343 348 11 0 chr6 33772788 33772877 -115744160 - RSINE1 SINE B4 -5 160 71 3 842 2158 159 64 8 chr6 33772882 33773274 -115743763 + MTC LTR MaLR 6 419 -2 3 842 216 86 0 0 chr6 33773421 33773456 -115743581 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 842 219 128 51 0 chr6 33773470 33773509 -115743528 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 3 842 300 27 0 0 chr6 33774578 33774615 -115742422 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 3 842 468 0 0 0 chr6 33774633 33774685 -115742352 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 842 247 197 40 108 chr6 33774885 33774959 -115742078 + ID4 SINE ID 4 72 -11 3 842 587 304 189 18 chr6 33775548 33775572 -115741465 - ORR1D1 LTR MaLR -5 354 331 3 842 1088 73 7 0 chr6 33775572 33775709 -115741328 + B1_Mus1 SINE Alu 1 138 -10 3 842 406 0 0 36 chr6 33775709 33775765 -115741272 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 842 842 254 98 9 chr6 33775765 33776024 -115741013 - ORR1D1 LTR MaLR -29 330 21 3 842 248 0 31 0 chr6 33776053 33776085 -115740952 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 842 187 371 16 0 chr6 33776614 33776676 -115740361 - L2 LINE L2 -677 2742 2680 3 842 586 289 30 20 chr6 33776687 33776885 -115740152 - MIRb SINE MIR -35 233 34 3 842 680 307 89 44 chr6 33777111 33777336 -115739701 + B4A SINE B4 3 237 -55 3 842 422 164 16 48 chr6 33777418 33777604 -115739433 + (CATA)n Simple_repeat Simple_repeat 1 180 0 3 842 339 204 28 34 chr6 33777616 33777794 -115739243 + (CATA)n Simple_repeat Simple_repeat 2 178 0 3 842 1663 269 123 35 chr6 33778032 33778912 -115738125 + L1MA7 LINE L1 3650 4606 -1537 3 842 591 273 20 7 chr6 33779020 33779171 -115737866 - B4A SINE B4 -44 248 96 3 842 1117 258 78 54 chr6 33779266 33779856 -115737181 + L1MA7 LINE L1 4638 5241 -902 3 842 1245 260 85 15 chr6 33780061 33780592 -115736445 + L1MA7 LINE L1 5335 5902 -389 3 842 302 287 173 44 chr6 33780608 33780903 -115736134 + L1MA7 LINE L1 5956 6288 -3 3 842 235 267 16 48 chr6 33781574 33781637 -115735400 - MER5B DNA MER1_type -111 67 7 3 842 1749 156 194 8 chr6 33782011 33782366 -115734671 + MTC LTR MaLR 1 421 0 3 842 195 42 0 0 chr6 33782422 33782446 -115734591 + (TTA)n Simple_repeat Simple_repeat 3 26 0 3 842 235 304 77 39 chr6 33782645 33782775 -115734262 - Lx8 LINE L1 -146 7327 7193 3 842 309 151 0 0 chr6 33783928 33783981 -115733056 + T-rich Low_complexity Low_complexity 1 53 0 3 842 385 303 81 31 chr6 33784057 33784217 -115732820 - MER58B DNA MER1_type -171 170 3 3 842 234 0 0 0 chr6 33784786 33784812 -115732225 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 3 842 599 225 10 14 chr6 33784814 33785106 -115731931 + GA-rich Low_complexity Low_complexity 1 291 0 3 842 309 302 27 131 chr6 33785149 33785332 -115731705 - MER5B DNA MER1_type -13 165 2 3 842 1740 176 62 57 chr6 33785474 33785913 -115731124 - RMER10A LTR ERVL -1 441 1 3 842 235 358 44 22 chr6 33786175 33786312 -115730725 - L2 LINE L2 -668 2751 2612 3 842 1187 62 7 0 chr6 33786845 33786991 -115730046 + B1_Mus2 SINE Alu 1 147 0 3 842 237 65 0 0 chr6 33789390 33789421 -115727616 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 3 842 230 289 11 57 chr6 33789571 33789659 -115727378 + Helitron2Na_Mam RC Helitron? 7 90 -234 3 842 307 326 74 0 chr6 33789836 33789971 -115727066 + ID_B1 SINE B4 80 224 0 3 842 704 22 0 22 chr6 33789990 33790068 -115726969 + (GAAA)n Simple_repeat Simple_repeat 1 78 0 3 842 860 74 8 0 chr6 33790068 33790189 -115726848 + (GAGAA)n Simple_repeat Simple_repeat 4 125 0 3 842 704 22 0 22 chr6 33790189 33790201 -115726836 + (GAAA)n Simple_repeat Simple_repeat 3 13 0 3 842 664 185 382 36 chr6 33790313 33790588 -115726449 + ORR1D2 LTR MaLR 1 370 0 3 842 554 224 122 64 chr6 33790837 33791009 -115726028 + B3A SINE B2 1 182 -16 3 842 408 256 212 24 chr6 33791181 33791245 -115725792 - L1M5 LINE L1 -748 5398 5318 3 842 351 0 0 0 chr6 33791245 33791284 -115725753 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 842 408 256 212 24 chr6 33791284 33791511 -115725526 - L1M5 LINE L1 -829 5317 5052 3 842 28 0 0 0 chr6 33791543 33791571 -115725466 + AT_rich Low_complexity Low_complexity 1 28 0 3 842 195 146 0 0 chr6 33792526 33792567 -115724470 + (T)n Simple_repeat Simple_repeat 1 41 0 3 842 463 45 30 0 chr6 33792575 33792641 -115724396 - B1_Mus2 SINE Alu 0 147 80 3 842 342 0 0 0 chr6 33793108 33793146 -115723891 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 842 227 243 182 36 chr6 33793529 33793680 -115723357 - MIR SINE MIR -87 175 10 3 842 21 0 0 0 chr6 33795237 33795258 -115721779 + AT_rich Low_complexity Low_complexity 1 21 0 3 842 323 313 25 50 chr6 33797222 33797343 -115719694 + PB1D7 SINE Alu 1 118 -2 3 842 576 224 67 7 chr6 33798115 33798250 -115718787 + B1F2 SINE Alu 6 148 -1 3 842 1157 233 142 18 chr6 33799392 33799756 -115717281 - MTD LTR MaLR -32 387 12 3 842 1118 202 9 9 chr6 33799866 33800091 -115716946 - URR1B DNA MER1_type 0 225 1 3 842 327 323 53 35 chr6 33800349 33800519 -115716518 - L1MC4 LINE L1 -674 7368 7196 3 842 520 208 164 60 chr6 33800678 33800734 -115716303 - L1ME2 LINE L1 -20 6144 6083 3 842 324 0 0 0 chr6 33800734 33800770 -115716267 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 842 249 33 0 0 chr6 33800770 33800799 -115716238 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 842 520 208 164 60 chr6 33800799 33801022 -115716015 - L1ME2 LINE L1 -82 6082 5836 3 842 284 365 28 83 chr6 33801094 33801312 -115715725 + RMER4B LTR ERVK 7 212 -373 3 842 347 308 11 35 chr6 33801476 33801724 -115715313 - L1ME2 LINE L1 -348 5816 5582 3 842 511 274 67 64 chr6 33801763 33802122 -115714915 - L1MC LINE L1 -2533 3613 3254 4 842 527 320 22 17 chr6 33802153 33802331 -115714706 - MER58A DNA MER1_type -14 210 32 4 842 672 77 0 0 chr6 33802563 33802654 -115714383 + (TCC)n Simple_repeat Simple_repeat 3 93 0 4 842 667 297 16 13 chr6 33802656 33802973 -115714064 - L1MEc LINE L1 -3112 3207 2890 4 842 450 0 0 0 chr6 33803091 33803141 -115713896 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 842 306 320 100 15 chr6 33803157 33803357 -115713680 - L1MEc LINE L1 -6148 252 36 4 842 349 280 293 14 chr6 33803675 33803955 -115713082 + L1MB8 LINE L1 5337 5694 -490 4 842 352 279 39 103 chr6 33803966 33804122 -115712915 + PB1 SINE Alu 1 146 -3 4 842 377 313 39 52 chr6 33804101 33804256 -115712781 + ID_B1 SINE B4 28 180 -44 4 842 469 255 20 0 chr6 33804168 33804270 -115712767 + PB1D10 SINE Alu 14 117 0 4 842 252 241 0 18 chr6 33804270 33804325 -115712712 + GA-rich Low_complexity Low_complexity 2 55 0 4 842 437 242 123 43 chr6 33804328 33804604 -115712433 + L1MB8 LINE L1 5686 5983 -195 4 842 22 35 0 0 chr6 33804813 33804842 -115712195 + AT_rich Low_complexity Low_complexity 1 29 0 4 842 297 0 0 0 chr6 33805037 33805070 -115711967 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 4 842 244 294 0 0 chr6 33805083 33805134 -115711903 - B4A SINE B4 -12 280 230 4 842 1633 26 5 0 chr6 33805375 33805567 -115711470 - B2_Mm1a SINE B2 0 193 1 4 842 252 351 54 12 chr6 33806791 33806958 -115710079 - ERVL-E-int LTR ERVL -693 4974 4801 4 842 498 17 0 0 chr6 33808076 33808135 -115708902 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 842 702 35 0 0 chr6 33808141 33808226 -115708811 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 842 215 275 24 36 chr6 33809391 33809474 -115707563 + L3b LINE CR1 43 124 -358 4 842 388 335 113 67 chr6 33809608 33809998 -115707039 - MLT1J LTR MaLR -1 511 104 4 842 3426 74 4 9 chr6 33810307 33810769 -115706268 + L1_Mus4 LINE L1 6171 6630 -6 4 842 239 121 35 0 chr6 33811432 33811490 -115705547 + Lx LINE L1 6595 6654 0 4 842 235 156 0 43 chr6 33811719 33811766 -115705271 + CT-rich Low_complexity Low_complexity 6 50 0 4 842 213 65 0 0 chr6 33812705 33812736 -115704301 + (A)n Simple_repeat Simple_repeat 1 31 0 4 842 904 247 21 7 chr6 33812912 33813108 -115703929 - B3 SINE B2 -6 210 14 4 842 227 157 20 0 chr6 33814016 33814067 -115702970 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 842 424 236 118 66 chr6 33815397 33815533 -115701504 + B3A SINE B2 4 146 -52 4 842 483 48 0 0 chr6 33815534 33815596 -115701441 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 842 802 283 14 11 chr6 33815752 33816031 -115701006 - L1M2 LINE L1 -590 5701 5422 4 842 627 264 384 2 chr6 33816050 33816447 -115700590 - L1M2 LINE L1 -782 5361 4813 4 843 250 306 435 8 chr6 33816755 33816789 -115700248 + ID SINE ID 2 81 -143 4 843 231 416 0 9 chr6 33816789 33816903 -115700134 + PB1D10 SINE Alu 2 114 -3 4 843 472 269 149 16 chr6 33817974 33818223 -115698814 - L1MC3 LINE L1 -48 7737 7456 4 843 368 299 56 15 chr6 33818373 33818570 -115698467 - L1MD3 LINE L1 -312 7683 7479 4 843 333 100 0 0 chr6 33821887 33821937 -115695100 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 843 198 103 0 0 chr6 33823256 33823285 -115693752 + (A)n Simple_repeat Simple_repeat 1 29 0 4 843 578 277 47 55 chr6 33825481 33825756 -115691281 - L1MB3 LINE L1 -37 6146 5874 4 843 189 171 0 0 chr6 33826200 33826235 -115690802 + (TTGG)n Simple_repeat Simple_repeat 4 38 0 4 843 1580 223 103 12 chr6 33826236 33826721 -115690316 - Lx9 LINE L1 -11 7633 7105 4 843 445 314 76 48 chr6 33826743 33827097 -115689940 + Charlie7 DNA MER1_type 354 717 -1895 4 843 600 207 0 72 chr6 33827304 33827429 -115689608 - B1_Mm SINE Alu -30 117 2 4 843 962 236 40 5 chr6 33829942 33830142 -115686895 + B4A SINE B4 12 218 -74 4 843 804 286 8 43 chr6 33830182 33830438 -115686599 + MT2A LTR ERVL 215 461 -72 4 843 341 336 230 7 chr6 33830938 33831073 -115685964 - RSINE1 SINE B4 0 165 1 4 843 533 343 82 41 chr6 33831160 33831528 -115685509 + HAL1 LINE L1 804 1186 -1321 4 843 794 131 0 6 chr6 33831562 33831731 -115685306 + (GGGA)n Simple_repeat Simple_repeat 3 170 0 4 843 318 326 201 17 chr6 33832300 33832534 -115684503 + MLT1D LTR MaLR 5 281 -224 4 843 342 301 80 37 chr6 33832666 33832828 -115684209 - MIRc SINE MIR -94 174 6 4 843 270 81 0 0 chr6 33835134 33835171 -115681866 + (T)n Simple_repeat Simple_repeat 1 37 0 4 843 391 262 49 14 chr6 33835675 33835818 -115681219 - B1F2 SINE Alu -1 148 1 4 843 507 33 0 0 chr6 33835877 33835938 -115681099 + (TGG)n Simple_repeat Simple_repeat 1 61 0 4 843 577 153 101 8 chr6 33835942 33836061 -115680976 - B1_Mus1 SINE Alu -16 132 3 4 843 477 0 0 0 chr6 33836101 33836154 -115680883 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 4 843 248 331 0 0 chr6 33837634 33837713 -115679324 - L2c LINE L2 -227 3160 3079 4 843 398 182 0 0 chr6 33838078 33838155 -115678882 + RMER1B Other Other 986 1062 -4 4 843 590 250 0 0 chr6 33838160 33838300 -115678737 + MER2 DNA MER2_type 92 231 -114 4 843 3254 137 25 20 chr6 33838666 33839224 -115677813 + RLTR31_Mm LTR ERVK 1 561 0 4 843 605 246 168 0 chr6 33840774 33840965 -115676072 - L1MA5 LINE L1 -275 6025 5803 4 843 507 250 39 39 chr6 33841021 33841200 -115675837 + L1M1 LINE L1 5577 5755 -545 4 843 698 305 22 11 chr6 33841654 33841833 -115675204 - ID_B1 SINE B4 -21 203 23 4 843 526 300 141 41 chr6 33841934 33842302 -115674735 - LTR33B LTR ERVL -8 495 91 4 843 974 261 50 21 chr6 33842450 33842732 -115674305 + B4A SINE B4 1 290 -2 4 843 3302 38 5 8 chr6 33842782 33843179 -115673858 - MTA_Mm LTR MaLR 0 396 1 4 843 1380 76 5 21 chr6 33844049 33844237 -115672800 - B2_Mm2 SINE B2 -9 186 2 4 843 617 213 7 22 chr6 33844435 33844574 -115672463 + B1_Mur2 SINE Alu 7 143 -6 4 843 264 308 0 0 chr6 33844574 33844639 -115672398 + GA-rich Low_complexity Low_complexity 1 65 0 4 843 858 192 7 0 chr6 33844730 33844876 -115672161 + B1_Mus1 SINE Alu 2 148 0 4 843 915 228 43 14 chr6 33844910 33845119 -115671918 - B3 SINE B2 -1 215 1 4 843 186 219 92 15 chr6 33845815 33845880 -115671157 - MIRb SINE MIR -70 198 129 4 843 3658 169 72 17 chr6 33846353 33846670 -115670367 + Lx7 LINE L1 6551 6906 -790 4 843 228 35 0 0 chr6 33846670 33846699 -115670338 + (CAGA)n Simple_repeat Simple_repeat 1 29 0 4 843 3658 169 72 17 chr6 33846699 33847101 -115669936 + Lx7 LINE L1 6907 7310 -386 4 843 284 169 28 0 chr6 33847200 33847271 -115669766 + CT-rich Low_complexity Low_complexity 1 73 0 4 843 933 197 50 137 chr6 33847281 33847640 -115669397 + Lx7 LINE L1 7369 7696 0 4 843 1223 192 87 20 chr6 33847642 33847940 -115669097 + MTD LTR MaLR 47 364 -55 4 843 4226 32 36 0 chr6 33848093 33848595 -115668442 - L1Md_F2 LINE L1 0 6582 6063 4 843 195 139 0 0 chr6 33848754 33848790 -115668247 + (T)n Simple_repeat Simple_repeat 1 36 0 4 843 222 37 0 0 chr6 33849410 33849437 -115667600 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 4 843 1000 248 135 26 chr6 33849764 33850104 -115666933 + MTE2a LTR MaLR 1 377 -2 4 843 295 116 0 0 chr6 33850129 33850172 -115666865 + B1_Mus2 SINE Alu 1 43 -104 4 843 329 311 112 24 chr6 33850502 33850627 -115666410 + ID_B1 SINE B4 82 217 -7 4 843 418 267 45 8 chr6 33850728 33850860 -115666177 + B1F2 SINE Alu 12 148 -1 4 843 752 253 143 17 chr6 33850992 33851229 -115665808 + B4 SINE B4 20 286 -6 4 843 21 0 0 0 chr6 33854267 33854288 -115662749 + AT_rich Low_complexity Low_complexity 1 21 0 4 843 1635 283 43 19 chr6 33854374 33854527 -115662510 - Lx7 LINE L1 -776 6920 6760 4 843 432 97 0 0 chr6 33854527 33854589 -115662448 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 4 843 1635 283 43 19 chr6 33854589 33854918 -115662119 - Lx7 LINE L1 -937 6759 6427 4 843 1065 227 149 12 chr6 33855406 33855749 -115661288 - RMER10A LTR ERVL -52 390 1 4 843 1459 269 56 52 chr6 33858586 33859103 -115657934 - Lx8 LINE L1 -21 7452 6934 4 843 1761 289 76 19 chr6 33859256 33859824 -115657213 - Lx8 LINE L1 -533 6940 6341 4 843 373 286 20 174 chr6 33860007 33860097 -115656940 + RSINE1 SINE B4 1 88 -77 4 843 452 140 0 79 chr6 33860097 33860198 -115656839 + Lx3_Mus LINE L1 6917 7009 0 4 843 373 286 20 174 chr6 33860198 33860302 -115656735 + RSINE1 SINE B4 89 165 0 4 843 192 232 143 0 chr6 33860937 33860993 -115656044 + MIRb SINE MIR 123 186 -82 4 843 198 345 18 35 chr6 33861239 33861353 -115655684 - L2a LINE L2 -1 3425 3314 4 843 486 276 47 20 chr6 33861424 33861572 -115655465 + RSINE1 SINE B4 2 153 -12 4 843 522 139 0 0 chr6 33861867 33861953 -115655084 + (TA)n Simple_repeat Simple_repeat 2 87 0 4 843 216 362 21 28 chr6 33862417 33862562 -115654475 - L2a LINE L2 -546 2873 2730 4 843 21 0 0 0 chr6 33863958 33863979 -115653058 + AT_rich Low_complexity Low_complexity 1 21 0 4 843 1303 246 62 18 chr6 33864461 33864797 -115652240 - ORR1E LTR MaLR -8 351 1 4 843 1639 42 0 0 chr6 33865061 33865251 -115651786 - B2_Mm1a SINE B2 -3 190 1 4 843 328 183 132 12 chr6 33866014 33866097 -115650940 + B3A SINE B2 2 94 -104 4 843 25 0 0 0 chr6 33866151 33866176 -115650861 + AT_rich Low_complexity Low_complexity 1 25 0 4 843 412 285 64 38 chr6 33866421 33866687 -115650350 + LTR82A LTR ERVL 20 292 -580 4 843 494 309 50 55 chr6 33866776 33866975 -115650062 + B4A SINE B4 1 198 -94 4 843 374 302 81 61 chr6 33866977 33867273 -115649764 + L1M5 LINE L1 5381 5682 -497 4 843 1096 232 58 61 chr6 33867275 33867601 -115649436 - MTEb LTR MaLR -42 337 13 4 843 374 201 59 3 chr6 33867599 33867690 -115649347 - B3 SINE B2 -85 113 6 4 843 435 238 53 12 chr6 33867927 33868056 -115648981 - MIR SINE MIR -87 181 45 5 843 25 0 0 0 chr6 33869962 33869987 -115647050 + AT_rich Low_complexity Low_complexity 1 25 0 5 843 2325 194 78 15 chr6 33870170 33870255 -115646782 - RLTR20B1 LTR ERVK -2 561 472 5 843 387 0 0 0 chr6 33870255 33870298 -115646739 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 843 2325 194 78 15 chr6 33870298 33870740 -115646297 - RLTR20B1 LTR ERVK -92 471 2 5 843 486 0 0 0 chr6 33871598 33871652 -115645385 + (CAAAA)n Simple_repeat Simple_repeat 5 58 0 5 843 393 22 0 0 chr6 33872066 33872112 -115644925 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 5 843 288 238 80 45 chr6 33872151 33872239 -115644798 - RSINE1 SINE B4 -9 156 66 5 843 258 56 0 0 chr6 33873350 33873386 -115643651 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 843 496 198 0 47 chr6 33875313 33875419 -115641618 - B1_Mur1 SINE Alu 0 149 49 5 843 209 358 77 43 chr6 33875855 33876179 -115640858 - L2a LINE L2 -132 3294 2960 5 843 194 348 53 88 chr6 33876546 33876921 -115640116 - L2a LINE L2 -935 2484 2123 5 843 1182 256 120 44 chr6 33877182 33877656 -115639381 + L1MC3 LINE L1 7258 7767 -18 5 843 1390 254 209 20 chr6 33877675 33877814 -115639223 + L1MB8 LINE L1 5341 5482 -696 5 843 1084 209 24 0 chr6 33877814 33878024 -115639013 + B3 SINE B2 1 215 -1 5 843 1390 254 209 20 chr6 33878024 33878578 -115638459 + L1MB8 LINE L1 5483 6164 -14 5 843 215 261 73 53 chr6 33878912 33879062 -115637975 + L2a LINE L2 3214 3366 -60 5 843 238 319 43 11 chr6 33880255 33880347 -115636690 - L4 LINE RTE -201 1828 1734 5 843 702 265 134 4 chr6 33881212 33881451 -115635586 + B4 SINE B4 10 279 -13 5 843 284 303 50 59 chr6 33881429 33881650 -115635387 - RLTR15 LTR ERVK -15 344 126 5 843 285 29 0 0 chr6 33881650 33881684 -115635353 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 843 2053 124 0 6 chr6 33882697 33883022 -115634015 - ORR1A3 LTR MaLR 0 326 4 5 843 1729 259 49 38 chr6 33883024 33883558 -115633479 - Lx9 LINE L1 -195 7449 6910 5 843 838 138 0 28 chr6 33884102 33884281 -115632756 + CT-rich Low_complexity Low_complexity 4 177 0 5 843 578 315 29 25 chr6 33884432 33884670 -115632367 + Tigger5 DNA MER2_type 2154 2392 -14 5 843 1148 123 71 5 chr6 33884729 33884941 -115632096 + Lx LINE L1 6425 6650 -4 5 843 243 0 0 0 chr6 33885195 33885222 -115631815 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 5 843 329 337 56 20 chr6 33887298 33887495 -115629542 - MIRb SINE MIR -19 249 46 5 843 917 282 84 10 chr6 33887675 33887983 -115629054 + MTEa LTR MaLR 49 379 0 5 843 433 345 29 32 chr6 33889491 33889737 -115627300 - MLT1K LTR MaLR 0 595 351 5 843 21 0 0 0 chr6 33891001 33891022 -115626015 + AT_rich Low_complexity Low_complexity 1 21 0 5 843 849 246 26 31 chr6 33891046 33891239 -115625798 - B3 SINE B2 -24 192 1 5 843 297 0 0 0 chr6 33891267 33891300 -115625737 + (T)n Simple_repeat Simple_repeat 1 33 0 5 843 2859 236 54 24 chr6 33891399 33891795 -115625242 + L1_Mur3 LINE L1 4623 5023 -857 5 843 3168 61 5 2 chr6 33891795 33892190 -115624847 - MTA_Mm LTR MaLR 0 396 1 5 843 2859 236 54 24 chr6 33892190 33892554 -115624483 + L1_Mur3 LINE L1 5024 5406 -474 5 843 2780 78 3 0 chr6 33892550 33892907 -115624130 - L1_Mus3 LINE L1 -192 6444 6087 5 843 916 108 13 6 chr6 33892907 33893065 -115623972 + L1_Mus3 LINE L1 6480 6638 0 5 843 387 271 19 0 chr6 33893065 33893172 -115623865 + L1_Mur3 LINE L1 5398 5506 -374 5 843 865 155 13 47 chr6 33893693 33893842 -115623195 + B1_Mur4 SINE Alu 1 144 -6 5 843 246 208 0 0 chr6 33893842 33893895 -115623142 + GA-rich Low_complexity Low_complexity 2 54 0 5 843 398 234 0 41 chr6 33894213 33894311 -115622726 - MTEa LTR MaLR -285 94 1 5 843 738 276 116 35 chr6 33895657 33896168 -115620869 + L1MB8 LINE L1 5622 6173 -5 5 843 444 117 0 0 chr6 33898182 33898259 -115618778 + (A)n Simple_repeat Simple_repeat 1 77 0 5 843 487 284 84 0 chr6 33898902 33899057 -115617980 - B3 SINE B2 0 216 49 5 843 333 357 91 28 chr6 33899252 33899572 -115617465 - MLT1L LTR MaLR -80 530 191 5 843 1005 185 30 5 chr6 33900189 33900390 -115616647 + B3 SINE B2 2 207 -9 5 843 537 288 27 20 chr6 33902306 33902455 -115614582 + B4 SINE B4 1 150 -142 5 843 270 0 0 0 chr6 33905665 33905695 -115611342 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 843 210 284 54 43 chr6 33905872 33905964 -115611073 + MIRb SINE MIR 11 103 -165 5 843 721 237 41 12 chr6 33907356 33907527 -115609510 + B3A SINE B2 5 180 -18 5 843 1548 186 55 3 chr6 33908567 33908875 -115608162 - L1MB7 LINE L1 -9 6175 5852 5 843 474 211 111 26 chr6 33909179 33909296 -115607741 - ID_B1 SINE B4 -10 214 88 5 843 270 254 0 0 chr6 33909354 33909421 -115607616 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 5 843 261 342 25 19 chr6 33909431 33909592 -115607445 - L1ME3A LINE L1 -12 6161 6000 5 843 22 0 0 0 chr6 33910131 33910153 -115606884 + AT_rich Low_complexity Low_complexity 1 22 0 5 843 1914 129 230 3 chr6 33910608 33910951 -115606086 - MTC LTR MaLR 0 421 1 5 843 1131 233 80 33 chr6 33911012 33911349 -115605688 - ORR1E LTR MaLR -2 357 5 5 843 369 0 0 0 chr6 33913531 33913572 -115603465 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 843 198 103 0 0 chr6 33913576 33913605 -115603432 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 843 307 209 29 15 chr6 33913628 33913696 -115603341 - ID_B1 SINE B4 -74 150 82 5 843 207 0 0 0 chr6 33914439 33914462 -115602575 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 843 226 270 40 13 chr6 33915840 33915915 -115601122 - ID4 SINE ID -4 79 3 5 843 216 97 0 0 chr6 33915941 33915972 -115601065 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 5 843 329 250 44 22 chr6 33917435 33917525 -115599512 - RSINE1 SINE B4 -63 102 11 5 843 830 273 43 47 chr6 33917558 33917835 -115599202 - L1MA6 LINE L1 -468 5832 5557 5 843 189 0 0 0 chr6 33917888 33917909 -115599128 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 5 843 304 230 252 92 chr6 33918489 33918593 -115598444 + MER2 DNA MER2_type 100 224 -121 5 843 870 163 57 0 chr6 33918593 33918734 -115598303 + B1_Mur3 SINE Alu 1 149 0 5 843 304 230 252 92 chr6 33918734 33918835 -115598202 + MER2 DNA MER2_type 225 338 -7 5 843 281 292 22 0 chr6 33919300 33919389 -115597648 + MTD LTR MaLR 329 419 0 5 843 3073 192 0 37 chr6 33920689 33921233 -115595804 + Lx5 LINE L1 6462 6985 -65 5 843 267 103 0 0 chr6 33921233 33921272 -115595765 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 5 843 3073 192 0 37 chr6 33921272 33921295 -115595742 + Lx5 LINE L1 6986 7008 -42 5 843 245 247 63 25 chr6 33921650 33921729 -115595308 - MIR SINE MIR -38 224 143 5 843 819 188 76 16 chr6 33922753 33922937 -115594100 + B3 SINE B2 22 216 0 5 843 781 198 102 14 chr6 33923066 33923281 -115593756 - MTEb LTR MaLR 0 379 146 5 843 449 127 322 43 chr6 33923606 33923721 -115593316 - B1_Mus2 SINE Alu 0 147 1 5 843 184 239 22 0 chr6 33924005 33924051 -115592986 - L2c LINE L2 -5 3382 3336 5 843 431 200 46 28 chr6 33924895 33925003 -115592034 + L1MA5A LINE L1 5487 5596 -701 5 843 1141 276 69 35 chr6 33925071 33925562 -115591475 + Lx9 LINE L1 6962 7469 -175 5 843 464 304 74 12 chr6 33925689 33925945 -115591092 + L1MA5A LINE L1 5591 5862 -435 5 843 251 295 13 13 chr6 33925973 33926052 -115590985 - Lx8 LINE L1 -326 7147 7069 5 843 766 92 15 8 chr6 33926053 33926185 -115590852 - L1_Mus3 LINE L1 0 6638 6506 5 843 263 301 54 0 chr6 33928811 33928904 -115588133 - MIRb SINE MIR -48 220 123 5 843 266 297 56 31 chr6 33929818 33929978 -115587059 + RMER15 LTR ERVL 336 499 -76 5 843 528 16 0 0 chr6 33930075 33930136 -115586901 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 843 844 251 69 36 chr6 33931289 33931689 -115585348 - RLTR40 LTR ERVK -52 765 294 5 843 326 107 17 32 chr6 33931710 33931786 -115585251 + RMER1B Other Other 937 1053 -13 5 843 22 0 0 0 chr6 33931789 33931811 -115585226 + AT_rich Low_complexity Low_complexity 1 22 0 5 843 477 314 0 0 chr6 33931940 33932058 -115584979 + B1F SINE Alu 1 118 -31 5 843 189 0 0 0 chr6 33932074 33932095 -115584942 + (T)n Simple_repeat Simple_repeat 1 21 0 5 843 266 73 0 24 chr6 33933340 33933382 -115583655 + (TCTCC)n Simple_repeat Simple_repeat 2 42 0 5 843 284 272 96 28 chr6 33933424 33933602 -115583435 - LTR82B Low_complexity ERVL -174 656 467 5 843 1169 103 26 51 chr6 33935360 33935555 -115581482 + B2_Mm2 SINE B2 1 190 -5 5 843 257 94 57 0 chr6 33935636 33935689 -115581348 + B2_Mm2 SINE B2 137 192 -3 5 843 944 218 141 75 chr6 33936180 33936499 -115580538 - ORR1D2 LTR MaLR 0 370 27 5 843 3201 95 52 2 chr6 33936499 33936964 -115580073 + Lx LINE L1 6151 6638 -16 5 843 282 56 0 0 chr6 33936964 33937000 -115580037 + (TAA)n Simple_repeat Simple_repeat 1 36 0 5 843 944 218 141 75 chr6 33937000 33937026 -115580011 - ORR1D2 LTR MaLR -344 26 2 5 843 197 268 14 40 chr6 33937242 33937316 -115579721 - L2a LINE L2 -1 3425 3354 5 843 372 363 102 62 chr6 33937841 33938016 -115579021 - MLT1H1 LTR MaLR -69 486 295 5 843 504 0 0 0 chr6 33938016 33938072 -115578965 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 843 186 43 0 0 chr6 33938074 33938097 -115578940 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 843 372 363 102 62 chr6 33938097 33938291 -115578746 - MLT1H1 LTR MaLR -261 294 102 5 843 651 297 207 11 chr6 33938474 33939025 -115578012 + L1M4 LINE L1 311 969 -5573 5 843 442 333 38 13 chr6 33939184 33939342 -115577695 + RSINE1 SINE B4 4 165 0 5 843 1179 101 39 17 chr6 33939471 33939652 -115577385 + B2_Mm2 SINE B2 2 186 -9 5 843 365 221 31 94 chr6 33939910 33940070 -115576967 + MLT1F1 LTR MaLR 420 569 0 5 843 261 255 143 0 chr6 33940440 33940538 -115576499 + PB1D9 SINE Alu 1 112 -8 5 843 1032 107 70 12 chr6 33940550 33940721 -115576316 + B2_Mm2 SINE B2 1 181 -14 5 843 420 71 0 0 chr6 33940732 33940788 -115576249 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 6 843 1136 75 0 0 chr6 33940789 33940949 -115576088 - B2_Mm2 SINE B2 -35 160 1 6 843 254 283 58 89 chr6 33941724 33942015 -115575022 + RMER17C LTR ERVK 70 351 -59 6 843 1018 274 62 51 chr6 33943797 33944151 -115572886 + MTEa LTR MaLR 21 378 -1 6 843 417 109 0 0 chr6 33944505 33944569 -115572468 + (CATA)n Simple_repeat Simple_repeat 4 67 0 6 843 417 39 0 0 chr6 33944694 33944745 -115572292 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 843 644 311 32 16 chr6 33944749 33945001 -115572036 - Lx8 LINE L1 -509 6964 6709 6 843 797 260 107 37 chr6 33946255 33946527 -115570510 + RMER5 LTR ERV1 229 519 -15 6 843 2362 83 41 0 chr6 33946946 33947260 -115569777 + ORR1A2 LTR MaLR 1 327 0 6 843 1396 172 116 0 chr6 33947260 33947528 -115569509 + RMER5 LTR ERV1 146 444 -90 6 844 238 278 75 95 chr6 33948301 33948448 -115568589 + LTR77 LTR ERV1 445 588 -34 6 844 474 242 0 24 chr6 33948456 33948579 -115568458 + Lx5 LINE L1 6244 6363 -687 6 844 1013 312 78 20 chr6 33948593 33948988 -115568049 + Lx5 LINE L1 6501 6897 -153 6 844 278 287 15 69 chr6 33949139 33949270 -115567767 + CT-rich Low_complexity Low_complexity 5 128 0 6 844 429 274 176 0 chr6 33950159 33950317 -115566720 - Charlie5 DNA MER1_type -9 2615 2445 6 844 183 42 0 0 chr6 33950317 33950341 -115566696 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 6 844 429 274 176 0 chr6 33950341 33950386 -115566651 - Charlie5 DNA MER1_type -180 2444 2377 6 844 212 240 0 0 chr6 33950707 33950765 -115566272 + T-rich Low_complexity Low_complexity 1 58 0 6 844 186 43 0 0 chr6 33952045 33952068 -115564969 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 844 1770 173 43 32 chr6 33952149 33952519 -115564518 + ORR1D1 LTR MaLR 1 374 0 6 844 378 0 0 0 chr6 33953514 33953556 -115563481 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 844 1179 75 0 0 chr6 33953780 33953926 -115563111 - B1_Mus2 SINE Alu 0 147 2 6 844 749 260 77 24 chr6 33953928 33954176 -115562861 + B4A SINE B4 24 284 -8 6 844 5171 99 44 11 chr6 33954725 33955481 -115561556 - Lx LINE L1 0 6654 5874 6 844 350 269 73 67 chr6 33955600 33955779 -115561258 + MIRc SINE MIR 21 200 -68 6 844 349 218 47 134 chr6 33956204 33956331 -115560706 - ORR1E LTR MaLR -14 365 250 6 844 25 51 0 0 chr6 33956376 33956415 -115560622 + AT_rich Low_complexity Low_complexity 1 39 0 6 844 204 122 102 0 chr6 33956440 33956489 -115560548 + T-rich Low_complexity Low_complexity 5 58 0 6 844 617 221 0 39 chr6 33956490 33956617 -115560420 - B1_Mur1 SINE Alu -2 147 26 6 844 1059 249 5 0 chr6 33956652 33956861 -115560176 - B3 SINE B2 -6 210 1 6 844 396 307 49 28 chr6 33956895 33957039 -115559998 - ORR1E LTR MaLR -204 155 9 6 844 263 342 89 58 chr6 33957867 33958159 -115558878 - LTR90A LTR LTR -616 360 60 6 844 620 248 7 34 chr6 33958288 33958434 -115558603 + RSINE1 SINE B4 4 145 -20 6 844 325 255 0 138 chr6 33958430 33958450 -115558587 + MT2B LTR ERVL 151 153 -448 6 844 587 267 0 0 chr6 33958450 33958566 -115558471 + B1_Mur1 SINE Alu 1 116 -33 6 844 217 178 43 22 chr6 33958553 33958599 -115558438 + B4 SINE B4 40 86 -206 6 844 2828 144 56 0 chr6 33958601 33959045 -115557992 + MERVL_2A-int LTR ERVL 1553 2021 -3740 6 844 1210 123 6 0 chr6 33959172 33959343 -115557694 + MERVL_2A-int LTR ERVL 1991 2162 -3599 6 844 10252 126 57 16 chr6 33959313 33960924 -115556113 + MERVL_2A-int LTR ERVL 3947 5623 -138 6 844 292 187 13 39 chr6 33960929 33961007 -115556030 + ORR1A3-int LTR MaLR 567 642 -1321 6 844 255 83 0 0 chr6 33961007 33961043 -115555994 + MERVL-int LTR ERVL 5450 5485 0 6 844 4443 91 6 39 chr6 33961043 33961664 -115555373 + MT2B LTR ERVL 1 601 0 6 844 384 273 157 27 chr6 33961676 33961823 -115555214 + B4A SINE B4 109 274 -18 6 844 1112 241 224 6 chr6 33962577 33962907 -115554130 + MTD LTR MaLR 18 419 0 6 844 233 240 26 39 chr6 33963172 33963250 -115553787 - PB1D10 SINE Alu -1 116 40 6 844 460 120 27 36 chr6 33963969 33964081 -115552956 - Lx4A LINE L1 0 7058 6948 6 844 1065 209 15 0 chr6 33964322 33964523 -115552514 + B3 SINE B2 2 205 -11 6 844 356 269 0 0 chr6 33964571 33964649 -115552388 + MTE2b LTR MaLR 50 127 -252 6 844 462 282 15 8 chr6 33964662 33964794 -115552243 + MTE2b LTR MaLR 247 379 0 6 844 1996 171 224 14 chr6 33965229 33965649 -115551388 + RLTR18B LTR ERVK 5 512 0 6 844 387 0 0 0 chr6 33966102 33966145 -115550892 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 844 306 0 0 0 chr6 33966145 33966178 -115550859 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 844 615 261 65 0 chr6 33966198 33966351 -115550686 + RSINE1 SINE B4 3 165 0 6 844 333 258 0 0 chr6 33966351 33966471 -115550566 + (CA)n Simple_repeat Simple_repeat 1 120 0 6 844 881 277 106 3 chr6 33966797 33966922 -115550115 + L1MA9 LINE L1 4893 5017 -1123 6 844 207 0 0 0 chr6 33966922 33966945 -115550092 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 844 881 277 106 3 chr6 33966945 33967141 -115549896 + L1MA9 LINE L1 5018 5246 -894 6 844 903 274 67 57 chr6 33967144 33967458 -115549579 - ORR1D2 LTR MaLR -2 368 52 6 844 271 300 10 10 chr6 33967491 33967592 -115549445 + L1MA9 LINE L1 5483 5583 -729 6 844 489 310 139 29 chr6 33967633 33967978 -115549059 + L1MA9 LINE L1 5763 6145 -146 6 844 354 23 0 0 chr6 33967978 33968021 -115549016 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 844 489 311 74 57 chr6 33968021 33968060 -115548977 + L1MA9 LINE L1 6146 6176 -136 6 844 1088 103 0 6 chr6 33968060 33968226 -115548811 + (GAA)n Simple_repeat Simple_repeat 1 165 0 6 844 489 311 74 57 chr6 33968226 33968285 -115548752 + L1MA9 LINE L1 6177 6231 -81 6 844 934 272 52 93 chr6 33968335 33968844 -115548193 + L1MB3 LINE L1 5006 5517 -666 6 844 1016 234 45 0 chr6 33968844 33969045 -115547992 + B3 SINE B2 1 210 -6 6 844 934 260 44 129 chr6 33969045 33969283 -115547754 + L1MB3 LINE L1 5518 5715 -468 6 844 929 268 17 9 chr6 33969322 33969552 -115547485 + ORR1D2 LTR MaLR 3 234 -136 6 844 871 232 70 18 chr6 33969538 33969766 -115547271 - MTE2b LTR MaLR -137 242 3 6 844 271 254 36 93 chr6 33969816 33969955 -115547082 + L1MB3 LINE L1 6017 6147 -36 6 844 225 0 0 0 chr6 33970126 33970151 -115546886 + (A)n Simple_repeat Simple_repeat 1 25 0 6 844 605 294 11 22 chr6 33970584 33970765 -115546272 - B3A SINE B2 0 198 20 6 844 2396 93 6 9 chr6 33970784 33971110 -115545927 + ORR1A2 LTR MaLR 1 325 -2 6 844 302 288 61 46 chr6 33971162 33971293 -115545744 + ORR1E LTR MaLR 21 153 -206 6 844 312 94 0 0 chr6 33971293 33971346 -115545691 + (T)n Simple_repeat Simple_repeat 1 53 0 6 844 236 310 29 52 chr6 33971440 33971505 -115545532 + ORR1E LTR MaLR 227 290 -69 6 844 5236 145 52 19 chr6 33971505 33972384 -115544653 - RMER13B LTR ERVK 0 908 1 6 844 236 310 29 52 chr6 33972384 33972454 -115544583 + ORR1E LTR MaLR 291 359 0 6 844 595 309 133 22 chr6 33972706 33973007 -115544030 + MLT2B4 LTR ERVL 27 346 -174 6 844 244 353 10 19 chr6 33973301 33973405 -115543632 + ORR1E LTR MaLR 3 105 -254 6 844 254 203 84 70 chr6 33973453 33973538 -115543499 - RMER21A LTR ERV1 -255 692 639 6 844 213 271 0 0 chr6 33973552 33973674 -115543363 + GA-rich Low_complexity Low_complexity 1 122 0 6 844 360 348 85 65 chr6 33973895 33974295 -115542742 - MLT1H2 LTR MaLR 0 489 82 6 844 1064 253 33 4 chr6 33974283 33974557 -115542480 - ORR1D1 LTR MaLR -91 283 2 6 844 227 191 125 62 chr6 33974677 33974789 -115542248 + Lx9 LINE L1 7507 7625 -19 6 844 34 42 0 0 chr6 33974795 33974843 -115542194 + AT_rich Low_complexity Low_complexity 1 48 0 6 844 1925 176 79 16 chr6 33975525 33975906 -115541131 - MTD LTR MaLR -8 411 7 6 844 1327 96 27 0 chr6 33976187 33976374 -115540663 - B2_Mm2 SINE B2 -3 192 1 6 844 502 107 45 0 chr6 33976421 33976498 -115540539 + CT-rich Low_complexity Low_complexity 37 118 0 6 844 972 110 11 17 chr6 33976498 33976674 -115540363 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 6 844 502 107 45 0 chr6 33976674 33976708 -115540329 + polypyrimidine Low_complexity Low_complexity 3 36 0 6 844 519 332 78 62 chr6 33977460 33977948 -115539089 - RLTR11A2 LTR ERVK -31 496 1 6 844 238 231 25 37 chr6 33977948 33978028 -115539009 + LTR37B LTR ERV1 390 468 0 6 844 185 154 26 0 chr6 33978819 33978858 -115538179 + CT-rich Low_complexity Low_complexity 1 40 0 6 844 475 254 8 92 chr6 33980893 33981016 -115536021 + B1F2 SINE Alu 30 141 -8 6 844 333 125 0 0 chr6 33981016 33981072 -115535965 + (ATG)n Simple_repeat Simple_repeat 2 57 0 6 844 795 235 6 12 chr6 33981789 33981953 -115535084 + RSINE1 SINE B4 3 165 0 6 844 180 241 93 0 chr6 33983081 33983135 -115533902 - L2 LINE L2 -1335 2084 2026 6 844 303 247 64 13 chr6 33983440 33983518 -115533519 - MIRb SINE MIR -4 264 183 6 844 907 234 0 14 chr6 33983721 33983938 -115533099 - Lx9 LINE L1 -603 7041 6828 6 844 1035 197 5 33 chr6 33983950 33984165 -115532872 + B3 SINE B2 3 211 -5 6 844 796 223 67 5 chr6 33984202 33984396 -115532641 + B3 SINE B2 5 210 -6 6 844 281 331 89 0 chr6 33984437 33984561 -115532476 - RSINE1 SINE B4 -27 138 4 6 844 453 299 4 99 chr6 33984726 33984978 -115532059 - MER34A LTR ERV1 -347 224 1 6 844 249 259 135 27 chr6 33984997 33985108 -115531929 - MIRb SINE MIR -122 146 24 6 844 342 305 176 0 chr6 33985600 33985787 -115531250 + MIRb SINE MIR 8 227 -41 6 844 306 0 0 0 chr6 33985948 33985982 -115531055 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 844 327 293 441 36 chr6 33987256 33987444 -115529593 + B4A SINE B4 1 264 -28 6 844 459 35 0 0 chr6 33987444 33987501 -115529536 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 844 327 328 7 56 chr6 33987501 33987528 -115529509 + B4A SINE B4 265 290 -2 6 844 225 0 0 0 chr6 33988096 33988121 -115528916 + (CAA)n Simple_repeat Simple_repeat 3 27 0 6 844 194 371 14 57 chr6 33988125 33988265 -115528772 + L2c LINE L2 3231 3364 -23 6 844 506 198 115 0 chr6 33988812 33988908 -115528129 - PB1D9 SINE Alu -5 115 9 6 844 228 35 0 0 chr6 33989019 33989048 -115527989 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 6 844 1165 44 0 0 chr6 33989048 33989184 -115527853 - B1_Mus1 SINE Alu -12 136 1 6 844 204 111 0 0 chr6 33989533 33989569 -115527468 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 6 844 24 0 0 0 chr6 33989573 33989597 -115527440 + GC_rich Low_complexity Low_complexity 1 24 0 6 844 222 37 0 0 chr6 33989680 33989707 -115527330 + (TCCCC)n Simple_repeat Simple_repeat 4 30 0 6 844 192 97 0 0 chr6 33989803 33989834 -115527203 + (C)n Simple_repeat Simple_repeat 1 31 0 6 844 518 286 40 56 chr6 33990858 33991043 -115525994 - MER5A DNA MER1_type -10 179 1 7 844 1335 232 54 11 chr6 33991606 33991959 -115525078 - ORR1D2 LTR MaLR -2 368 1 7 844 1531 58 0 5 chr6 33992910 33993101 -115523936 + B2_Mm2 SINE B2 2 191 -4 7 844 840 158 15 0 chr6 33993189 33993322 -115523715 + B1_Mur2 SINE Alu 2 136 -13 7 844 192 77 0 0 chr6 33993744 33993770 -115523267 + (TCCCG)n Simple_repeat Simple_repeat 1 26 0 7 844 519 148 0 0 chr6 33993770 33993858 -115523179 + (TCTCC)n Simple_repeat Simple_repeat 3 90 0 7 844 995 111 0 20 chr6 33993858 33994005 -115523032 - B1_Mus1 SINE Alu 0 148 5 7 844 415 261 0 25 chr6 33994053 33994171 -115522866 - PB1D10 SINE Alu -1 116 2 7 844 242 282 50 91 chr6 33995928 33996049 -115520988 - MER5B DNA MER1_type -62 116 1 7 844 537 194 0 0 chr6 33996317 33996492 -115520545 + (CA)n Simple_repeat Simple_repeat 2 176 0 7 844 446 0 19 0 chr6 33996543 33996597 -115520440 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 844 202 336 107 25 chr6 33996989 33997111 -115519926 - MIRb SINE MIR -40 228 97 7 844 406 211 18 55 chr6 33998418 33998447 -115518590 + MT2B LTR ERVL 135 159 -442 7 844 583 122 27 27 chr6 33998447 33998557 -115518480 + B1_Mus2 SINE Alu 1 110 -37 7 844 303 71 0 0 chr6 33999280 33999322 -115517715 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 7 844 234 0 0 0 chr6 33999974 34000000 -115517037 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 844 189 0 0 0 chr6 34000000 34000021 -115517016 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 844 211 247 60 36 chr6 34000122 34000206 -115516831 + MER5A DNA MER1_type 18 103 -86 2 844 23 0 0 0 chr6 34000445 34000468 -115516569 + AT_rich Low_complexity Low_complexity 1 23 0 3 844 198 71 0 0 chr6 34000715 34000743 -115516294 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 4 844 31 58 0 0 chr6 34000771 34000823 -115516214 + AT_rich Low_complexity Low_complexity 1 52 0 5 844 598 263 30 0 chr6 34000920 34001053 -115515984 - RSINE1 SINE B4 -2 163 27 6 844 678 223 74 0 chr6 34001574 34001749 -115515288 - B3 SINE B2 -1 215 28 7 844 1337 94 16 5 chr6 34001858 34002051 -115514986 - B2_Mm2 SINE B2 0 195 1 8 844 200 184 20 0 chr6 34002099 34002148 -115514889 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 844 615 205 128 69 chr6 34002290 34002494 -115514543 - B3 SINE B2 0 216 1 1 844 213 337 0 71 chr6 34002804 34002903 -115514134 - MIR3 SINE MIR -8 200 109 1 844 333 304 417 16 chr6 34003811 34004045 -115512992 - MER2 DNA MER2_type -15 330 3 1 844 342 0 0 0 chr6 34005817 34005855 -115511182 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 844 422 288 111 8 chr6 34005858 34005984 -115511053 - RSINE1 SINE B4 -24 141 3 1 844 210 37 0 0 chr6 34005988 34006015 -115511022 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 844 24 0 0 0 chr6 34007070 34007094 -115509943 + AT_rich Low_complexity Low_complexity 1 24 0 1 844 1110 188 49 10 chr6 34007094 34007298 -115509739 - B3 SINE B2 -4 212 1 1 844 202 116 47 0 chr6 34007670 34007713 -115509324 + CT-rich Low_complexity Low_complexity 2 46 0 1 844 395 242 0 10 chr6 34007738 34007834 -115509203 - B1F2 SINE Alu -46 103 9 1 844 210 143 0 0 chr6 34008525 34008560 -115508477 + (T)n Simple_repeat Simple_repeat 1 35 0 2 844 226 270 27 13 chr6 34009062 34009137 -115507900 - L1MC5 LINE L1 -54 7907 7832 2 844 627 140 9 0 chr6 34009375 34009482 -115507555 - B1_Mur2 SINE Alu 0 149 42 2 844 231 161 0 125 chr6 34009430 34009494 -115507543 - 4.5SRNA scRNA scRNA -6 88 33 2 844 750 224 139 44 chr6 34010309 34010603 -115506434 - MTE2b LTR MaLR 0 379 58 2 844 8800 19 0 0 chr6 34010628 34011840 -115505197 - L1Md_T LINE L1 0 6582 5371 2 844 434 169 87 16 chr6 34011861 34011987 -115505050 + Lx9 LINE L1 7508 7642 -2 2 844 1261 82 43 21 chr6 34012612 34012798 -115504239 - B2_Mm2 SINE B2 -3 192 3 2 844 576 274 0 8 chr6 34013282 34013407 -115503630 - ID_B1 SINE B4 -10 214 91 2 844 286 270 60 0 chr6 34013429 34013584 -115503453 + L1MA8 LINE L1 6113 6287 -4 2 844 231 220 20 0 chr6 34013759 34013809 -115503228 + CT-rich Low_complexity Low_complexity 4 54 0 3 844 429 141 0 0 chr6 34013891 34013962 -115503075 + (TCCC)n Simple_repeat Simple_repeat 3 73 0 3 844 2169 94 3 3 chr6 34014628 34014947 -115502090 - ORR1A2 LTR MaLR -8 319 1 3 844 737 136 136 0 chr6 34015730 34015855 -115501182 - B1_Mus1 SINE Alu -6 142 1 3 844 558 0 0 0 chr6 34016210 34016272 -115500765 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 844 1216 202 5 0 chr6 34017061 34017284 -115499753 + URR1B DNA MER1_type 2 225 0 3 844 270 188 36 48 chr6 34018253 34018337 -115498700 + MLT1D LTR MaLR 306 388 -117 3 844 258 32 0 0 chr6 34018613 34018644 -115498393 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 844 362 285 137 63 chr6 34018696 34019126 -115497911 - L1ME4a LINE L1 -289 5835 5374 3 844 21 0 0 56 chr6 34019128 34019143 -115497894 + AT_rich Low_complexity Low_complexity 1 14 0 3 844 1207 68 0 0 chr6 34019143 34019290 -115497747 + B1_Mus2 SINE Alu 1 147 0 4 844 21 0 0 56 chr6 34019290 34019310 -115497727 + AT_rich Low_complexity Low_complexity 1 20 0 4 844 410 239 215 0 chr6 34019653 34019783 -115497254 - B3 SINE B2 -36 180 23 4 844 500 252 13 52 chr6 34019821 34019976 -115497061 - B1_Mur3 SINE Alu 0 149 1 4 844 225 0 0 0 chr6 34020481 34020506 -115496531 + (T)n Simple_repeat Simple_repeat 1 25 0 4 844 408 186 216 0 chr6 34020533 34020635 -115496402 + B1_Mur1 SINE Alu 3 126 -23 4 844 195 42 0 0 chr6 34020639 34020663 -115496374 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 844 33 0 0 0 chr6 34021017 34021050 -115495987 + AT_rich Low_complexity Low_complexity 1 33 0 4 844 930 222 10 21 chr6 34023963 34024156 -115492881 + B3 SINE B2 2 192 -24 4 844 1362 64 47 0 chr6 34024179 34024351 -115492686 - B2_Mm2 SINE B2 -14 181 2 4 844 1343 73 22 0 chr6 34024353 34024531 -115492506 - B2_Mm2 SINE B2 -10 185 4 5 844 3356 76 2 7 chr6 34024804 34025252 -115491785 - L1_Mus4 LINE L1 -10 6626 6181 5 844 336 303 0 90 chr6 34025372 34025517 -115491520 - MTEa LTR MaLR -247 132 1 5 844 535 301 135 24 chr6 34026969 34027340 -115489697 - L1MD2 LINE L1 -270 6089 5678 5 844 1248 48 0 0 chr6 34027554 34027701 -115489336 + B1_Mus2 SINE Alu 1 147 0 5 844 610 239 7 27 chr6 34027705 34027851 -115489186 - B1_Mur1 SINE Alu 0 149 7 5 844 776 243 18 41 chr6 34028308 34028527 -115488510 - B3 SINE B2 -1 215 2 5 844 680 211 209 10 chr6 34029444 34029650 -115487387 - RMER15 LTR ERVL 0 575 329 5 844 235 222 15 45 chr6 34029859 34029925 -115487112 - RMER15 LTR ERVL -508 67 4 5 844 229 409 35 0 chr6 34031047 34031189 -115485848 + L2b LINE L2 3227 3373 -2 5 844 219 167 0 0 chr6 34031294 34031336 -115485701 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 5 844 3697 48 0 0 chr6 34032927 34033366 -115483671 + L1_Mus2 LINE L1 6128 6566 0 6 844 378 0 0 0 chr6 34034304 34034346 -115482691 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 844 209 333 0 0 chr6 34035145 34035217 -115481820 + MIR SINE MIR 35 106 -102 6 844 233 217 0 0 chr6 34035296 34035342 -115481695 - L2c LINE L2 -22 3365 3320 6 844 180 135 0 0 chr6 34035423 34035460 -115481577 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 6 844 987 107 0 0 chr6 34035461 34035639 -115481398 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 844 441 0 0 0 chr6 34038475 34038524 -115478513 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 844 362 289 76 22 chr6 34038567 34038858 -115478179 - MLT2D LTR ERVL -40 515 72 6 844 200 94 31 0 chr6 34040305 34040337 -115476700 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 844 270 0 0 0 chr6 34041205 34041235 -115475802 + (TTA)n Simple_repeat Simple_repeat 2 31 0 6 844 256 0 50 25 chr6 34041377 34041417 -115475620 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 7 844 180 111 0 0 chr6 34042486 34042513 -115474524 + (T)n Simple_repeat Simple_repeat 1 27 0 7 844 4031 91 89 0 chr6 34043005 34043557 -115473480 - MT2B LTR ERVL 0 601 1 7 844 511 211 40 7 chr6 34043969 34044117 -115472920 + L1MA6 LINE L1 6145 6297 -3 7 844 463 230 0 65 chr6 34044284 34044391 -115472646 + RSINE1 SINE B4 3 102 -63 7 844 631 134 0 0 chr6 34044418 34044515 -115472522 - B1_Mus2 SINE Alu -7 140 44 7 844 420 211 19 37 chr6 34044517 34044625 -115472412 + B1_Mur1 SINE Alu 42 147 -2 7 844 278 182 121 0 chr6 34044698 34044764 -115472273 + MADE2 DNA Mariner 1 74 -6 7 844 599 296 114 68 chr6 34044883 34045417 -115471620 - MLT1E1A LTR MaLR -126 554 1 7 844 1087 279 90 37 chr6 34046069 34046556 -115470481 + L1MB2 LINE L1 5505 6017 -154 7 844 435 307 56 45 chr6 34046962 34047160 -115469877 + MamRep605 Unknown Unknown 456 655 -221 8 844 473 274 189 81 chr6 34047940 34048263 -115468774 - MTE2a LTR MaLR -14 405 57 8 844 2315 69 69 0 chr6 34048263 34048569 -115468468 - ORR1A2 LTR MaLR 0 327 1 8 844 443 304 153 64 chr6 34048569 34048614 -115468423 - MTE2a LTR MaLR -363 56 15 8 844 297 0 0 0 chr6 34048784 34048817 -115468220 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 844 242 117 0 77 chr6 34048829 34048894 -115468143 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 8 844 956 182 74 0 chr6 34049716 34049919 -115467118 - URR1B DNA MER1_type -7 218 1 8 844 404 300 15 30 chr6 34050340 34050474 -115466563 - RSINE1 SINE B4 -31 134 3 8 844 603 255 92 10 chr6 34050477 34050683 -115466354 - L1MB4 LINE L1 -34 6146 5924 8 844 228 205 0 0 chr6 34056090 34056129 -115460908 + polypyrimidine Low_complexity Low_complexity 4 42 0 8 844 691 178 16 0 chr6 34056129 34056258 -115460779 - B1_Mur1 SINE Alu -5 144 14 8 844 216 307 0 62 chr6 34057454 34057534 -115459503 + L3 LINE CR1 4263 4337 -152 9 844 194 300 4 33 chr6 34059010 34059079 -115457958 + MIR SINE MIR 196 268 0 9 844 274 281 73 0 chr6 34059335 34059417 -115457620 + PB1 SINE Alu 2 89 -38 9 844 2942 283 95 14 chr6 34061800 34062924 -115454113 - Lx8 LINE L1 0 7473 6259 9 844 935 127 0 6 chr6 34063145 34063472 -115453565 + (TG)n Simple_repeat Simple_repeat 1 325 0 9 844 403 292 106 43 chr6 34063494 34063655 -115453382 - B4A SINE B4 -121 171 1 9 844 362 126 157 22 chr6 34063675 34063764 -115453273 - Lx7 LINE L1 0 7696 7596 9 844 568 132 29 22 chr6 34063776 34063915 -115453122 + CT-rich Low_complexity Low_complexity 2 141 0 9 844 361 236 90 36 chr6 34063915 34064082 -115452955 - Lx7 LINE L1 -105 7591 7416 9 844 997 80 27 49 chr6 34064158 34064342 -115452695 - Lx LINE L1 -3 6651 6472 9 844 504 331 21 21 chr6 34065038 34065232 -115451805 - ID_B1 SINE B4 -5 219 26 1 844 1112 70 0 14 chr6 34065788 34065934 -115451103 - B1_Mus1 SINE Alu 0 148 5 1 844 25 31 0 0 chr6 34066110 34066142 -115450895 + AT_rich Low_complexity Low_complexity 1 32 0 1 844 649 125 0 0 chr6 34066576 34066672 -115450365 + PB1D9 SINE Alu 18 113 -7 1 844 2266 131 0 3 chr6 34067199 34067556 -115449481 + ORR1B1 LTR MaLR 1 356 -38 1 844 688 149 0 0 chr6 34067556 34067663 -115449374 + B3 SINE B2 2 108 -108 1 844 553 158 26 0 chr6 34067685 34067799 -115449238 + GA-rich Low_complexity Low_complexity 4 120 0 1 844 378 272 168 0 chr6 34067810 34067935 -115449102 + RSINE1 SINE B4 15 160 -5 1 844 431 194 122 0 chr6 34068097 34068195 -115448842 + B3A SINE B2 1 110 -88 1 844 234 0 0 0 chr6 34068202 34068228 -115448809 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 844 797 127 8 0 chr6 34068636 34068762 -115448275 + B1_Mus2 SINE Alu 6 132 -15 1 844 577 260 106 42 chr6 34068763 34068952 -115448085 - B3 SINE B2 -15 201 1 1 844 309 270 219 5 chr6 34068995 34069196 -115447841 + L1M5 LINE L1 4419 4662 -1484 1 844 359 274 45 13 chr6 34069379 34069534 -115447503 + L1M5 LINE L1 5009 5168 -978 1 844 520 254 0 0 chr6 34069567 34069677 -115447360 + RSINE1 SINE B4 49 158 -7 1 844 370 264 120 6 chr6 34069680 34069855 -115447182 + L1M5 LINE L1 5119 5313 -833 1 844 348 24 0 0 chr6 34069865 34069906 -115447131 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 844 250 338 79 0 chr6 34070113 34070252 -115446785 + L1M5 LINE L1 5599 5748 -416 1 844 3530 18 5 0 chr6 34070440 34070834 -115446203 + MTA_Mm LTR MaLR 1 396 0 1 844 1204 189 105 73 chr6 34070880 34071223 -115445814 + ORR1E LTR MaLR 1 354 -5 1 844 269 300 57 24 chr6 34071236 34071359 -115445678 - L1MC5 LINE L1 -1203 6758 6632 1 844 285 250 15 0 chr6 34071362 34071430 -115445607 - ID4 SINE ID -13 70 2 1 844 398 255 196 38 chr6 34071744 34072009 -115445028 - Lx8 LINE L1 -1 7472 7166 1 844 333 0 0 0 chr6 34072336 34072373 -115444664 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 844 25 31 0 0 chr6 34072467 34072499 -115444538 + AT_rich Low_complexity Low_complexity 1 32 0 1 844 266 219 31 0 chr6 34072757 34072821 -115444216 + ORR1D2 LTR MaLR 1 66 -304 1 844 2600 39 53 0 chr6 34072853 34073211 -115443826 - RLTR10 LTR ERVK -2 388 12 1 844 822 94 0 0 chr6 34073213 34073330 -115443707 + (TC)n Simple_repeat Simple_repeat 1 117 0 1 844 268 234 169 0 chr6 34073350 34073427 -115443610 + ORR1D2 LTR MaLR 279 368 -2 1 844 229 177 79 16 chr6 34073913 34073976 -115443061 + ID4 SINE ID 14 80 -3 1 844 336 261 21 52 chr6 34074174 34074271 -115442766 + RSINE1 SINE B4 2 95 -70 1 844 1671 256 88 14 chr6 34074287 34074778 -115442259 + Lx7 LINE L1 6804 7330 -366 1 844 236 255 116 30 chr6 34074764 34074962 -115442075 + Lx7 LINE L1 7482 7696 0 1 844 333 244 261 0 chr6 34076520 34076635 -115440402 + B1F2 SINE Alu 2 146 -3 1 844 540 241 78 48 chr6 34076710 34076876 -115440161 + ID_B1 SINE B4 54 224 0 1 844 216 0 0 0 chr6 34077041 34077065 -115439972 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 1 844 222 62 0 0 chr6 34078173 34078205 -115438832 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 844 227 296 116 14 chr6 34078281 34078428 -115438609 + Helitron3Na_Mam RC Helitron 5 166 -320 1 845 219 36 0 0 chr6 34079631 34079659 -115437378 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 845 180 0 0 0 chr6 34079662 34079682 -115437355 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 845 1109 89 0 0 chr6 34079682 34079840 -115437197 - B2_Mm2 SINE B2 -37 158 1 1 845 926 229 57 148 chr6 34080109 34080427 -115436610 + B4A SINE B4 2 290 -2 1 845 287 315 19 63 chr6 34080504 34080663 -115436374 + RSINE1 SINE B4 3 154 -11 1 845 1766 160 129 5 chr6 34081082 34081453 -115435584 - MTD LTR MaLR -2 417 1 1 845 204 125 0 0 chr6 34081642 34081674 -115435363 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 845 278 295 108 0 chr6 34084443 34084609 -115432428 - MTEa LTR MaLR 0 379 196 1 845 230 276 30 30 chr6 34085300 34085401 -115431636 - MLT1A0 LTR MaLR -228 137 37 1 845 375 321 47 24 chr6 34085964 34086133 -115430904 + MER5B DNA MER1_type 3 175 -3 1 845 979 201 41 0 chr6 34086335 34086529 -115430508 - B3 SINE B2 -14 202 1 1 845 225 0 0 0 chr6 34087081 34087106 -115429931 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 845 603 27 0 0 chr6 34087106 34087181 -115429856 - B1_Mm SINE Alu -9 138 64 1 845 405 304 66 7 chr6 34088026 34088162 -115428875 + B1F1 SINE Alu 6 149 0 1 845 282 214 18 0 chr6 34088162 34088218 -115428819 + ID4_ SINE ID 4 60 -23 1 845 849 255 80 116 chr6 34088219 34088658 -115428379 - RLTR23 LTR ERV1 0 430 8 1 845 224 59 29 0 chr6 34088913 34088947 -115428090 + (TGG)n Simple_repeat Simple_repeat 1 35 0 1 845 440 239 78 83 chr6 34088955 34089036 -115428001 - B4A SINE B4 0 292 220 1 845 384 119 0 0 chr6 34089036 34089095 -115427942 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 1 845 552 157 59 0 chr6 34089103 34089205 -115427832 - B1_Mm SINE Alu -23 124 17 1 845 615 217 217 0 chr6 34089211 34089400 -115427637 - B4A SINE B4 -62 230 1 1 845 205 182 0 22 chr6 34089813 34089858 -115427179 + C-rich Low_complexity Low_complexity 5 48 0 1 845 523 222 55 41 chr6 34090329 34090505 -115426532 + MER104 DNA Tc2 4 181 0 1 845 284 261 305 17 chr6 34090989 34091173 -115425864 - B4A SINE B4 -14 278 42 1 845 3355 33 5 3 chr6 34091230 34091621 -115425416 + MTA_Mm LTR MaLR 1 392 -4 1 845 1481 58 11 0 chr6 34091621 34091811 -115425226 + B2_Mm1t SINE B2 2 193 0 1 845 25 31 0 0 chr6 34092254 34092286 -115424751 + AT_rich Low_complexity Low_complexity 1 32 0 1 845 1003 53 43 50 chr6 34092402 34092542 -115424495 + B1_Mus2 SINE Alu 1 139 -8 1 845 198 0 0 0 chr6 34092559 34092581 -115424456 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 1 845 565 215 247 6 chr6 34093725 34093903 -115423134 + ID_B1 SINE B4 3 223 -1 1 845 728 269 21 5 chr6 34093916 34094103 -115422934 + B3 SINE B2 1 190 -26 1 845 264 120 0 0 chr6 34094739 34094789 -115422248 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 845 641 268 7 0 chr6 34094807 34094960 -115422077 + B3A SINE B2 1 154 -44 1 845 288 120 0 0 chr6 34094961 34095011 -115422026 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 845 227 277 16 40 chr6 34095409 34095533 -115421504 - RLTR15 LTR ERVK -217 142 22 1 845 2272 98 135 3 chr6 34096782 34097130 -115419907 - ORR1B1 LTR MaLR 0 394 1 1 845 1597 105 20 20 chr6 34097885 34098137 -115418900 - Lx4A LINE L1 -2 7056 6805 1 845 376 297 90 6 chr6 34099749 34099905 -115417132 + ERVL-E-int LTR ERVL 4996 5164 -503 1 845 2431 136 20 17 chr6 34100100 34100505 -115416532 - MTB_Mm LTR MaLR 0 407 2 1 845 2694 136 241 14 chr6 34101199 34101751 -115415286 - RLTR33 LTR ERVK 0 678 1 1 845 243 0 0 0 chr6 34105847 34105874 -115411163 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 845 240 260 0 0 chr6 34112284 34112334 -115404703 - L1M5 LINE L1 -455 5669 5620 1 845 306 73 0 0 chr6 34112527 34112568 -115404469 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 845 334 305 17 0 chr6 34114491 34114665 -115402372 + (TA)n Simple_repeat Simple_repeat 2 178 0 1 845 308 275 14 0 chr6 34114683 34114752 -115402285 + ID4_ SINE ID 5 74 -9 1 845 204 136 68 0 chr6 34114753 34114797 -115402240 + GA-rich Low_complexity Low_complexity 2 48 0 1 845 369 0 0 0 chr6 34114941 34114982 -115402055 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 845 201 39 0 0 chr6 34114993 34115019 -115402018 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 845 535 256 77 52 chr6 34115164 34115220 -115401817 + ID_B1 SINE B4 22 217 -4 1 845 800 172 22 7 chr6 34115220 34115355 -115401682 + B1_Mur1 SINE Alu 6 142 -7 1 845 220 265 43 14 chr6 34115787 34115856 -115401181 + ID4 SINE ID 12 82 -1 1 845 374 357 39 39 chr6 34115922 34116100 -115400937 + MER3 DNA MER1_type 32 209 0 1 845 1049 110 22 28 chr6 34116618 34116796 -115400241 + B2_Mm2 SINE B2 1 177 -18 1 845 503 200 0 0 chr6 34117275 34117375 -115399662 + PB1D10 SINE Alu 2 101 -16 1 845 24 32 0 0 chr6 34117468 34117499 -115399538 + AT_rich Low_complexity Low_complexity 1 31 0 1 845 234 0 0 0 chr6 34118200 34118226 -115398811 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1 845 591 187 84 61 chr6 34118230 34118361 -115398676 - B1_Mus1 SINE Alu -13 135 2 1 845 296 288 0 24 chr6 34118427 34118509 -115398528 + ID SINE ID 1 80 -144 1 845 21 36 0 0 chr6 34118777 34118805 -115398232 + AT_rich Low_complexity Low_complexity 1 28 0 1 845 758 197 0 0 chr6 34119367 34119494 -115397543 + B1_Mur1 SINE Alu 2 128 -21 1 845 409 284 26 0 chr6 34120013 34120129 -115396908 - L1MB5 LINE L1 0 6174 6056 1 845 287 271 173 43 chr6 34120762 34120947 -115396090 + MER106A DNA MER1_type 28 236 0 1 845 232 233 0 104 chr6 34121416 34121446 -115395591 - ID4 SINE ID -19 64 41 1 845 2597 160 7 19 chr6 34121446 34121872 -115395165 - MTC LTR MaLR 0 421 1 1 845 232 233 0 104 chr6 34121872 34121908 -115395129 - ID4 SINE ID -43 40 5 1 845 242 250 41 14 chr6 34122408 34122481 -115394556 - MER5B DNA MER1_type -65 113 39 1 845 279 297 132 20 chr6 34122614 34122765 -115394272 + MIR SINE MIR 65 232 -30 1 845 278 169 0 15 chr6 34122868 34122934 -115394103 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 845 221 143 13 253 chr6 34123050 34123125 -115393912 - B1_Mur4 SINE Alu -77 73 17 2 845 458 212 186 21 chr6 34123063 34123203 -115393834 - B4 SINE B4 -128 164 2 2 845 393 102 0 0 chr6 34123589 34123648 -115393389 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 845 249 270 143 34 chr6 34123945 34124064 -115392973 - L1MB8 LINE L1 -94 6084 5953 2 845 330 26 0 0 chr6 34124547 34124586 -115392451 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 845 182 273 16 98 chr6 34124913 34124974 -115392063 - L3b LINE CR1 -1 481 426 2 845 22 0 0 0 chr6 34125537 34125559 -115391478 + AT_rich Low_complexity Low_complexity 1 22 0 2 845 369 0 0 0 chr6 34126384 34126425 -115390612 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 845 699 269 35 0 chr6 34128191 34128362 -115388675 - B3 SINE B2 -38 178 2 2 845 204 333 97 0 chr6 34128380 34128452 -115388585 - MER5B DNA MER1_type -99 79 1 1 845 206 277 30 30 chr6 34128513 34128580 -115388457 + MER5B DNA MER1_type 72 138 -40 2 845 186 330 54 11 chr6 34128612 34128704 -115388333 + MER5B DNA MER1_type 6 101 -77 2 845 330 314 62 49 chr6 34129032 34129176 -115387861 - MER5A1 DNA MER1_type -15 151 6 2 845 514 103 0 22 chr6 34129300 34129389 -115387648 + (CCAA)n Simple_repeat Simple_repeat 4 90 0 2 845 1933 194 15 48 chr6 34129606 34130018 -115387019 - RMER10B LTR ERVL 0 398 1 2 845 1758 241 70 14 chr6 34130035 34130515 -115386522 - Lx8 LINE L1 -121 7352 6864 2 845 3688 159 90 6 chr6 34130678 34131009 -115386028 - RMER6D LTR ERVK 0 720 370 2 845 288 0 0 0 chr6 34131009 34131041 -115385996 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 845 3688 159 90 6 chr6 34131041 34131373 -115385664 - RMER6D LTR ERVK -351 369 2 2 845 246 357 43 62 chr6 34132097 34132306 -115384731 - MLT1H1 LTR MaLR -167 388 184 2 845 965 161 27 1 chr6 34132367 34132550 -115384487 + Lx5 LINE L1 6120 6318 -740 2 845 1015 265 19 23 chr6 34132598 34132864 -115384173 + MTE-int LTR MaLR 1055 1319 -261 2 845 6554 184 61 17 chr6 34133131 34134394 -115382643 - Lx9 LINE L1 -14 7630 6312 2 845 189 64 62 21 chr6 34134410 34134458 -115382579 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 2 845 1228 61 0 0 chr6 34134460 34134607 -115382430 - B1_Mus2 SINE Alu 0 147 1 2 845 204 40 0 0 chr6 34134946 34134971 -115382066 + (A)n Simple_repeat Simple_repeat 1 25 0 2 845 723 234 14 0 chr6 34135434 34135575 -115381462 + B1_Mur1 SINE Alu 2 144 -5 2 845 769 261 12 17 chr6 34135612 34135827 -115381210 - L1MB3 LINE L1 -303 5988 5783 2 845 1277 126 10 10 chr6 34135827 34136020 -115381017 - B2_Mm2 SINE B2 -2 193 1 2 845 509 290 33 101 chr6 34136020 34136080 -115380957 - L1MB3 LINE L1 -509 5782 5732 2 845 401 0 0 20 chr6 34136313 34136363 -115380674 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 845 383 267 0 41 chr6 34136363 34136484 -115380553 + MLT1A1 LTR MaLR 293 408 0 2 845 769 264 34 36 chr6 34136485 34136765 -115380272 - L1M3 LINE L1 -424 5759 5482 2 845 854 200 155 0 chr6 34136774 34136974 -115380063 - MTD LTR MaLR 0 419 189 2 845 290 224 0 0 chr6 34137404 34137453 -115379584 - MTD LTR MaLR -244 175 127 2 845 877 223 283 7 chr6 34137454 34137747 -115379290 - ORR1D1 LTR MaLR 0 374 1 2 845 4097 172 8 39 chr6 34137747 34138522 -115378515 - ORR1D1-int LTR MaLR 0 1370 620 2 845 1142 79 0 0 chr6 34138522 34138662 -115378375 + B1_Mus2 SINE Alu 1 140 -7 2 845 3804 270 98 50 chr6 34138662 34139319 -115377718 - ORR1D1-int LTR MaLR -778 731 8 2 845 1098 205 176 4 chr6 34139322 34139624 -115377413 - ORR1D1 LTR MaLR 0 370 21 2 845 225 182 179 18 chr6 34139837 34139893 -115377144 + RLTR41 LTR ERV1 59 123 -323 2 845 468 254 101 66 chr6 34139907 34140135 -115376902 + RLTR41 LTR ERV1 211 446 0 2 845 652 224 7 15 chr6 34140182 34140318 -115376719 - MTD LTR MaLR -283 136 2 2 845 399 231 209 9 chr6 34140347 34140452 -115376585 + URR1A DNA MER1_type 1 126 -100 2 845 2195 75 39 3 chr6 34140847 34141155 -115375882 - ORR1A2 LTR MaLR -8 319 1 2 845 410 264 39 97 chr6 34141376 34141531 -115375506 - B1F2 SINE Alu -1 148 3 2 845 3341 42 3 0 chr6 34142041 34142425 -115374612 + IAPEY_LTR LTR ERVK 1 385 0 2 845 218 136 0 22 chr6 34142802 34142847 -115374190 + CT-rich Low_complexity Low_complexity 3 46 0 2 845 260 204 19 0 chr6 34142853 34142907 -115374130 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 845 496 271 102 31 chr6 34142929 34143184 -115373853 - B4 SINE B4 -18 274 2 2 845 577 217 0 0 chr6 34143241 34143361 -115373676 + PB1D9 SINE Alu 1 120 0 2 845 344 177 11 132 chr6 34143372 34143463 -115373574 + B3A SINE B2 1 80 -118 2 845 246 282 36 95 chr6 34143463 34143509 -115373528 + BC1_Mm scRNA scRNA 1 129 -23 2 845 206 264 133 33 chr6 34143983 34144073 -115372964 + L2a LINE L2 3315 3413 -13 2 845 230 307 96 59 chr6 34144631 34144766 -115372271 - MIRb SINE MIR -89 179 40 2 845 667 277 69 10 chr6 34145102 34145306 -115371731 - B3 SINE B2 0 216 1 2 845 242 163 50 44 chr6 34145574 34145734 -115371303 + (TA)n Simple_repeat Simple_repeat 1 161 0 2 845 847 249 76 64 chr6 34146452 34146783 -115370254 + L1MA6 LINE L1 5957 6300 0 2 845 381 234 103 0 chr6 34146815 34146922 -115370115 + L1MA7 LINE L1 6174 6291 0 2 845 207 0 0 0 chr6 34147750 34147773 -115369264 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2 845 789 226 25 120 chr6 34147833 34148074 -115368963 - URR1B DNA MER1_type 0 225 8 2 845 604 361 92 31 chr6 34148653 34149042 -115367995 + LTR33 LTR ERVL 24 436 -79 2 845 252 0 0 0 chr6 34149429 34149457 -115367580 + (CAG)n Simple_repeat Simple_repeat 2 29 0 2 845 385 223 181 19 chr6 34150420 34150525 -115366512 - ID_B1 SINE B4 0 224 103 2 845 1452 50 0 0 chr6 34150526 34150823 -115366214 + (TG)n Simple_repeat Simple_repeat 1 297 0 2 845 419 294 140 11 chr6 34150874 34151053 -115365984 - B4 SINE B4 -87 205 4 2 845 187 292 41 14 chr6 34152017 34152090 -115364947 - MIR SINE MIR -128 134 60 2 845 1614 198 119 3 chr6 34152191 34152526 -115364511 + ORR1D1 LTR MaLR 1 374 0 2 845 212 93 0 44 chr6 34152708 34152753 -115364284 + (GGGAGA)n Simple_repeat Simple_repeat 4 46 0 2 845 246 184 20 0 chr6 34152820 34152869 -115364168 + PB1 SINE Alu 75 124 -3 2 845 320 263 58 124 chr6 34152962 34153026 -115364011 - B3 SINE B2 0 216 10 2 845 722 233 32 51 chr6 34153026 34153184 -115363853 - RSINE1 SINE B4 0 165 11 2 845 215 393 49 15 chr6 34153671 34153875 -115363162 + L3 LINE CR1 3968 4178 -311 2 845 897 157 7 10 chr6 34154274 34154583 -115362454 + GA-rich Low_complexity Low_complexity 1 308 0 2 845 375 315 74 3 chr6 34154666 34154854 -115362183 - MLT1A0 LTR MaLR -7 367 158 2 845 3724 181 63 64 chr6 34154877 34155886 -115361151 - RMER1B Other Other -9 1057 165 2 845 1170 260 35 0 chr6 34155902 34156190 -115360847 - RMER1B Other Other -704 362 65 2 845 256 241 37 0 chr6 34156193 34156247 -115360790 - RMER1B Other Other -976 90 35 2 845 23 33 0 0 chr6 34156295 34156325 -115360712 + AT_rich Low_complexity Low_complexity 1 30 0 2 845 207 0 0 0 chr6 34156329 34156352 -115360685 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 845 307 405 95 0 chr6 34156352 34156478 -115360559 - B3A SINE B2 -25 173 36 2 845 1164 249 50 123 chr6 34156489 34156520 -115360517 + MTD LTR MaLR 13 41 -378 2 845 992 154 214 0 chr6 34156520 34156702 -115360335 + URR1B DNA MER1_type 5 225 0 2 845 1164 249 50 123 chr6 34156702 34157109 -115359928 + MTD LTR MaLR 42 419 0 2 845 266 345 6 109 chr6 34157143 34157214 -115359823 - MLT1A0 LTR MaLR -218 147 83 2 845 779 229 5 90 chr6 34157214 34157425 -115359612 - B3A SINE B2 -4 194 2 2 845 266 345 6 109 chr6 34157425 34157509 -115359528 - MLT1A0 LTR MaLR -283 82 8 2 845 678 58 0 0 chr6 34157515 34157602 -115359435 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 845 230 275 127 30 chr6 34157712 34157877 -115359160 - L2a LINE L2 -62 3364 3184 2 845 216 333 0 74 chr6 34158251 34158332 -115358705 - ID4 SINE ID -2 81 7 2 845 416 51 17 0 chr6 34158436 34158495 -115358542 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 845 339 273 302 52 chr6 34158501 34158673 -115358364 - B4 SINE B4 -20 272 58 2 845 712 288 65 18 chr6 34159675 34159951 -115357086 + B4A SINE B4 3 291 -1 2 845 409 229 8 8 chr6 34159985 34160117 -115356920 + (CA)n Simple_repeat Simple_repeat 2 133 0 2 845 1518 240 69 8 chr6 34160879 34161270 -115355767 + MTD LTR MaLR 5 419 0 2 845 1149 75 0 0 chr6 34161303 34161450 -115355587 - B1_Mus2 SINE Alu 0 147 1 2 845 401 250 0 0 chr6 34162190 34162270 -115354767 - MER57A-int LTR ERV1 -302 5885 5806 2 845 797 219 120 26 chr6 34162779 34162971 -115354066 - B3 SINE B2 0 216 7 2 845 182 347 55 14 chr6 34163235 34163308 -115353729 + MIRb SINE MIR 23 98 -170 2 845 1835 169 69 24 chr6 34163937 34164271 -115352766 + MTC LTR MaLR 65 413 -8 2 845 434 298 88 16 chr6 34164607 34164801 -115352236 - Tigger7 DNA MER2_type -4 2487 2280 2 845 1379 279 29 37 chr6 34165010 34165420 -115351617 - Tigger7 DNA MER2_type -2080 411 5 2 845 477 76 0 0 chr6 34168118 34168184 -115348853 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 845 517 266 101 0 chr6 34168204 34168343 -115348694 - B3A SINE B2 -42 156 4 2 845 419 380 75 52 chr6 34168343 34169148 -115347889 + L2c LINE L2 2295 3144 -243 2 845 486 0 0 0 chr6 34169274 34169328 -115347709 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 845 424 267 50 0 chr6 34169377 34169478 -115347559 - PB1D9 SINE Alu -3 117 12 2 845 1260 97 34 0 chr6 34171268 34171443 -115345594 - B2_Mm2 SINE B2 -14 181 1 2 845 24 0 0 0 chr6 34171447 34171471 -115345566 + AT_rich Low_complexity Low_complexity 1 24 0 2 845 212 347 0 0 chr6 34171617 34171689 -115345348 + MIRc SINE MIR 166 237 -31 2 845 282 269 63 21 chr6 34172145 34172240 -115344797 - MER34 LTR ERV1 -69 473 375 2 845 1909 223 51 0 chr6 34173159 34173549 -115343488 - MTD LTR MaLR -9 410 1 2 845 188 254 61 106 chr6 34173579 34173645 -115343392 - L2c LINE L2 -39 3348 3286 2 845 236 240 102 29 chr6 34174248 34174337 -115342700 - B1F2 SINE Alu -1 116 16 2 845 275 318 60 20 chr6 34174731 34174882 -115342155 - LTR16A LTR ERVL -249 202 46 3 845 777 217 124 11 chr6 34175099 34175285 -115341752 + B3 SINE B2 2 208 -8 3 845 23 0 0 0 chr6 34175668 34175691 -115341346 + AT_rich Low_complexity Low_complexity 1 23 0 3 845 298 309 74 57 chr6 34177002 34177177 -115339860 + MER77 LTR ERVL 419 596 -11 3 845 264 274 68 10 chr6 34177339 34177442 -115339595 - MLT1B LTR MaLR -92 298 190 3 845 335 255 86 124 chr6 34177450 34177660 -115339377 - Charlie18a DNA MER1_type 0 342 141 3 845 1630 47 14 9 chr6 34177992 34178205 -115338832 - L1Md_F2 LINE L1 0 6582 6369 3 845 362 368 54 54 chr6 34178722 34178962 -115338075 + RMER5 LTR ERV1 33 265 -269 3 845 473 204 35 26 chr6 34178962 34179078 -115337959 + PB1D10 SINE Alu 1 117 0 3 845 362 368 54 54 chr6 34179078 34179188 -115337849 + RMER5 LTR ERV1 266 383 -151 3 845 1134 271 53 14 chr6 34179394 34179754 -115337283 + MTE2b LTR MaLR 2 375 -4 3 845 267 291 62 96 chr6 34181010 34181260 -115335777 + MIRb SINE MIR 1 258 -18 3 845 598 321 49 63 chr6 34181432 34181718 -115335319 + B4 SINE B4 11 292 0 3 845 308 129 0 46 chr6 34181758 34181823 -115335214 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 845 623 279 47 38 chr6 34181849 34182084 -115334953 - L1M3 LINE L1 -445 5738 5502 3 845 459 0 0 0 chr6 34182085 34182136 -115334901 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 845 421 292 35 26 chr6 34182224 34182340 -115334697 - MER20 DNA MER1_type -102 117 1 3 845 1122 154 61 10 chr6 34183786 34183983 -115333054 + MTC LTR MaLR 215 421 0 3 845 476 267 43 8 chr6 34184780 34184897 -115332140 - ORR1E LTR MaLR -2 377 257 3 845 524 287 64 23 chr6 34185024 34185195 -115331842 - ORR1E LTR MaLR -167 192 15 3 845 500 0 17 0 chr6 34185645 34185705 -115331332 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 845 357 125 0 0 chr6 34186155 34186211 -115330826 + (TAA)n Simple_repeat Simple_repeat 2 57 0 3 845 198 348 14 0 chr6 34186744 34186813 -115330224 + MIRc SINE MIR 132 201 -67 3 845 584 272 50 6 chr6 34188478 34188637 -115328400 + MamRep564 Unknown Unknown 68 233 -124 3 845 192 271 42 28 chr6 34190569 34190641 -115326396 - L3b LINE CR1 -228 254 182 3 845 480 298 14 28 chr6 34190963 34190977 -115326060 + ID_B1 SINE B4 79 216 -3 3 845 528 248 48 8 chr6 34190977 34191103 -115325934 + B1F SINE Alu 11 141 -8 3 845 399 293 15 29 chr6 34191304 34191441 -115325596 + MLT1A1 LTR MaLR 274 408 0 3 845 414 0 0 0 chr6 34191811 34191857 -115325180 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 845 387 0 0 0 chr6 34191866 34191909 -115325128 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 845 237 217 172 11 chr6 34192781 34192874 -115324163 - MIRc SINE MIR -71 197 90 3 845 1207 229 20 8 chr6 34192876 34193131 -115323906 - MTEa LTR MaLR -116 263 6 3 845 529 360 43 27 chr6 34193724 34194138 -115322899 + L1MC4a LINE L1 5522 5942 -1940 3 845 1342 222 171 12 chr6 34194445 34194778 -115322259 - MTD LTR MaLR -10 409 24 3 845 928 268 88 27 chr6 34195025 34195320 -115321717 - Tigger7 DNA MER2_type -35 2456 2144 3 845 295 296 0 58 chr6 34195625 34195711 -115321326 - ID4_ SINE ID 0 83 3 3 845 387 206 0 0 chr6 34196200 34196263 -115320774 + B3 SINE B2 2 64 -152 3 845 396 294 0 63 chr6 34196356 34196483 -115320554 + B3 SINE B2 77 195 -21 3 845 1041 135 169 15 chr6 34196798 34196993 -115320044 + URR1B DNA MER1_type 1 225 0 3 845 940 290 44 38 chr6 34197221 34197562 -115319475 + MT2A LTR ERVL 178 520 -13 3 845 1410 226 32 70 chr6 34198025 34198396 -115318641 - ORR1E LTR MaLR -2 357 1 3 845 249 111 15 45 chr6 34198528 34198594 -115318443 + CT-rich Low_complexity Low_complexity 3 66 0 3 845 215 378 46 52 chr6 34198684 34198857 -115318180 - MamSINE1 SINE tRNA -98 192 21 3 845 2278 139 50 25 chr6 34200095 34200492 -115316545 - MTB_Mm LTR MaLR 0 407 1 3 845 661 208 103 7 chr6 34200780 34200925 -115316112 + RSINE1 SINE B4 7 165 0 3 845 1104 122 0 0 chr6 34200928 34201223 -115315814 + (CA)n Simple_repeat Simple_repeat 1 295 0 3 845 473 266 137 36 chr6 34201479 34201617 -115315420 - L1MC4 LINE L1 0 8042 7897 3 845 414 0 0 0 chr6 34201617 34201663 -115315374 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 845 473 266 137 36 chr6 34201663 34201801 -115315236 - L1MC4 LINE L1 -146 7896 7738 3 845 1125 99 0 0 chr6 34204419 34204908 -115312129 + (GGA)n Simple_repeat Simple_repeat 1 489 0 3 845 2233 115 69 3 chr6 34204909 34205259 -115311778 + ORR1C1 LTR MaLR 6 378 0 3 845 1004 226 19 0 chr6 34205548 34205760 -115311277 + B3 SINE B2 1 216 0 3 845 257 345 212 0 chr6 34207177 34207342 -115309695 - LTR88c LTR Genie? -442 420 221 3 845 189 0 0 0 chr6 34207438 34207459 -115309578 + (T)n Simple_repeat Simple_repeat 1 21 0 3 845 371 240 55 46 chr6 34207699 34207808 -115309229 - PB1D10 SINE Alu -7 110 1 3 845 621 239 14 27 chr6 34208259 34208405 -115308632 + RSINE1 SINE B4 3 146 -19 3 846 262 311 0 0 chr6 34209940 34210014 -115307023 - ID4_ SINE ID -8 75 2 3 846 428 328 24 0 chr6 34210025 34210150 -115306887 - B1F SINE Alu -5 144 17 3 846 777 270 21 55 chr6 34210155 34210390 -115306647 - MLT2C2 LTR ERVL -232 232 6 3 846 301 261 15 0 chr6 34210530 34210595 -115306442 - MIRc SINE MIR -167 101 36 3 846 362 325 57 0 chr6 34211048 34211171 -115305866 + MIR SINE MIR 13 142 -120 3 846 180 308 46 0 chr6 34211360 34211425 -115305612 + MIRm SINE MIR 105 172 -104 3 846 905 211 40 0 chr6 34211425 34211600 -115305437 + B3A SINE B2 1 182 -16 3 846 23 33 0 0 chr6 34211635 34211665 -115305372 + AT_rich Low_complexity Low_complexity 1 30 0 3 846 3716 124 41 12 chr6 34211668 34212254 -115304783 + Lx LINE L1 6040 6642 -12 3 846 241 246 20 27 chr6 34213405 34213551 -115303486 + CT-rich Low_complexity Low_complexity 4 148 0 3 846 268 211 48 7 chr6 34213584 34213665 -115303372 - PB1D7 SINE Alu -66 83 2 3 846 342 339 8 78 chr6 34213896 34214024 -115303013 + B4 SINE B4 41 159 -133 3 846 733 284 63 42 chr6 34214235 34214549 -115302488 - ORR1E LTR MaLR -37 342 1 3 846 205 246 40 80 chr6 34214643 34214718 -115302319 - L2c LINE L2 -53 3334 3263 3 846 251 273 172 0 chr6 34214931 34215030 -115302007 - CR1_Mam LINE CR1 -872 1332 1217 3 846 2682 30 74 12 chr6 34215583 34215922 -115301115 - L1Md_F2 LINE L1 -12 6570 6211 3 846 362 320 95 51 chr6 34216098 34216455 -115300582 - MLT1A1 LTR MaLR 0 365 1 3 846 403 248 19 56 chr6 34217397 34217504 -115299533 - PB1 SINE Alu -10 117 15 3 846 249 315 8 75 chr6 34217487 34217607 -115299430 + RMER12 LTR ERVK 748 859 -463 3 846 1163 51 0 0 chr6 34217643 34217781 -115299256 + B1_Mus1 SINE Alu 2 139 -9 3 846 189 74 0 0 chr6 34217792 34217819 -115299218 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 3 846 1476 78 16 0 chr6 34217868 34218060 -115298977 - B2_Mm2 SINE B2 0 195 1 3 846 580 171 19 49 chr6 34218081 34218221 -115298816 - ORR1B1 LTR MaLR 0 421 293 3 846 1260 257 105 61 chr6 34218959 34219320 -115297717 + MTEa LTR MaLR 1 377 -2 3 846 425 326 15 15 chr6 34219759 34219896 -115297141 - MIRc SINE MIR -4 264 128 3 846 334 224 65 13 chr6 34219980 34220057 -115296980 + B3A SINE B2 1 81 -117 3 846 737 268 21 38 chr6 34220195 34220381 -115296656 + B3A SINE B2 2 184 -14 3 846 2450 126 37 3 chr6 34221980 34222361 -115294676 - ORR1B1 LTR MaLR 0 394 1 3 846 404 302 7 65 chr6 34222430 34222568 -115294469 - RMER10B LTR ERVL 0 398 269 3 846 453 122 0 0 chr6 34223626 34223700 -115293337 + (TCCA)n Simple_repeat Simple_repeat 4 77 0 3 846 406 334 109 71 chr6 34223743 34224707 -115292330 - L2b LINE L2 0 3375 2392 3 846 290 246 27 14 chr6 34224928 34225002 -115292035 - Lx8 LINE L1 -557 6916 6842 3 846 566 244 76 0 chr6 34225374 34225505 -115291532 - ID_B1 SINE B4 0 224 84 3 846 489 247 0 0 chr6 34226273 34226439 -115290598 + (CA)n Simple_repeat Simple_repeat 1 166 0 3 846 598 279 63 44 chr6 34227281 34227487 -115289550 + B3 SINE B2 2 211 -5 3 846 24 32 0 0 chr6 34227502 34227533 -115289504 + AT_rich Low_complexity Low_complexity 1 31 0 3 846 203 302 206 39 chr6 34228179 34228334 -115288703 + MER5A DNA MER1_type 4 184 -5 3 846 621 274 206 16 chr6 34228963 34229275 -115287762 - MER63D DNA AcHobo -687 374 4 3 846 253 333 103 55 chr6 34229587 34229752 -115287285 + MIR3 SINE MIR 16 188 -20 3 846 567 29 0 0 chr6 34231720 34231789 -115285248 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 846 343 289 36 66 chr6 34233807 34233944 -115283093 - MIRm SINE MIR -98 178 46 3 846 370 261 197 16 chr6 34234226 34234409 -115282628 + RMER21A LTR ERV1 466 681 -266 3 846 863 258 11 11 chr6 34234619 34234796 -115282241 + B3A SINE B2 11 185 -13 3 846 576 0 0 0 chr6 34234796 34234860 -115282177 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 846 450 293 84 25 chr6 34235601 34235839 -115281198 + LTR81B LTR ERV1? 8 259 -1134 3 846 1386 246 121 55 chr6 34235927 34236313 -115280724 - RMER5 LTR ERV1 0 534 122 3 846 2381 107 47 72 chr6 34236313 34236717 -115280320 - ORR1B1 LTR MaLR 0 394 1 3 846 1386 246 121 55 chr6 34236717 34236800 -115280237 - RMER5 LTR ERV1 -413 121 34 3 846 1105 200 14 14 chr6 34237193 34237406 -115279631 - B3 SINE B2 -3 213 1 3 846 550 327 188 24 chr6 34238045 34238540 -115278497 + MLT1G1 LTR MaLR 1 576 -3 4 846 268 301 105 32 chr6 34238577 34238824 -115278213 - L1M5 LINE L1 -255 5869 5605 4 846 661 217 0 0 chr6 34239149 34239269 -115277768 + PB1D9 SINE Alu 1 120 0 4 846 263 193 12 0 chr6 34239489 34239572 -115277465 + CT-rich Low_complexity Low_complexity 2 85 0 4 846 378 0 0 0 chr6 34239585 34239627 -115277410 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 846 399 255 10 20 chr6 34239680 34239780 -115277257 + B3A SINE B2 1 99 -99 4 846 268 354 10 20 chr6 34240818 34240919 -115276118 + MER94 DNA AcHobo 35 134 0 4 846 472 309 106 13 chr6 34241054 34241290 -115275747 - Charlie4a DNA MER1_type -51 457 200 4 846 549 80 0 0 chr6 34241301 34241376 -115275661 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 4 846 1453 233 48 3 chr6 34241444 34241758 -115275279 - ORR1D2 LTR MaLR 0 370 43 4 846 896 218 0 37 chr6 34243990 34244152 -115272885 + RSINE1 SINE B4 8 163 -2 4 846 352 297 121 30 chr6 34244152 34244182 -115272855 + B3 SINE B2 31 216 0 4 846 881 61 7 13 chr6 34244196 34244345 -115272692 + RMER17B LTR ERVK 312 459 -499 4 846 276 30 0 0 chr6 34244348 34244381 -115272656 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 846 700 173 63 0 chr6 34244390 34244517 -115272520 + B1_Mur1 SINE Alu 1 135 -14 4 846 261 0 0 0 chr6 34244520 34244549 -115272488 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 846 1217 194 92 46 chr6 34244834 34245117 -115271920 - MTE2a LTR MaLR 0 419 85 4 846 405 0 0 0 chr6 34245117 34245162 -115271875 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 846 267 31 0 0 chr6 34245162 34245193 -115271844 + (CG)n Simple_repeat Simple_repeat 1 32 0 4 846 537 301 158 98 chr6 34245193 34245225 -115271812 - MTE2a LTR MaLR -302 117 85 4 846 255 314 73 24 chr6 34245960 34246084 -115270953 + MIRb SINE MIR 69 198 -70 4 846 1940 218 24 129 chr6 34246108 34246410 -115270627 + Lx9 LINE L1 5259 5510 -337 4 846 1281 177 33 0 chr6 34246410 34246625 -115270412 - URR1B DNA MER1_type -3 222 1 4 846 1940 225 28 114 chr6 34246625 34247067 -115269970 + Lx9 LINE L1 5511 5971 -1673 4 846 482 246 79 0 chr6 34247160 34247274 -115269763 + URR1B DNA MER1_type 15 137 -88 4 846 225 316 0 40 chr6 34247188 34247287 -115269750 - CYRA11_Mm Unknown Y-chromosome -272 345 251 4 846 450 0 0 0 chr6 34247407 34247457 -115269580 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 4 846 393 22 0 0 chr6 34247457 34247502 -115269535 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 4 846 594 231 44 37 chr6 34247510 34247645 -115269392 + Lx9 LINE L1 6381 6516 -1128 4 846 261 0 0 0 chr6 34247655 34247684 -115269353 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 846 769 273 82 64 chr6 34247721 34248003 -115269034 + B4A SINE B4 6 292 0 4 846 396 285 89 0 chr6 34248169 34248292 -115268745 - L1ME3B LINE L1 -226 6014 5881 4 846 271 271 0 14 chr6 34248380 34248451 -115268586 - L1MC LINE L1 -2134 4012 3943 4 846 317 273 149 104 chr6 34248456 34248481 -115268556 - L1M5 LINE L1 -2254 3892 3874 4 846 258 32 0 0 chr6 34248481 34248512 -115268525 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 846 317 273 149 104 chr6 34248512 34248707 -115268330 - L1M5 LINE L1 -2273 3873 3662 4 846 1021 207 68 153 chr6 34248713 34249124 -115267913 + MTE2a LTR MaLR 1 376 -3 4 846 26 0 0 0 chr6 34249187 34249213 -115267824 + AT_rich Low_complexity Low_complexity 1 26 0 4 846 190 322 68 0 chr6 34249365 34249424 -115267613 + MIR SINE MIR 31 93 -169 4 846 311 343 62 97 chr6 34249550 34249808 -115267229 - L1M5 LINE L1 -3225 2921 2673 4 846 567 268 221 24 chr6 34249978 34250315 -115266722 - L1MC3 LINE L1 -32 7753 7332 4 846 2365 149 65 12 chr6 34250315 34250715 -115266322 + MTC LTR MaLR 1 421 0 4 846 567 268 221 24 chr6 34250715 34250839 -115266198 - L1MC3 LINE L1 -454 7331 7202 4 846 854 244 20 45 chr6 34250845 34251047 -115265990 - B3A SINE B2 -1 197 1 4 846 204 308 115 0 chr6 34251100 34251178 -115265859 + MIR SINE MIR 38 124 -84 4 846 1930 144 9 67 chr6 34251481 34251824 -115265213 + ORR1A2 LTR MaLR 5 327 0 4 846 266 327 141 39 chr6 34252001 34252157 -115264880 + Charlie15a DNA MER1_type 47 218 -6 4 846 624 169 76 103 chr6 34252529 34252541 -115264496 - RSINE1 SINE B4 -10 155 144 4 846 408 20 0 0 chr6 34252541 34252590 -115264447 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 846 624 178 78 103 chr6 34252590 34252741 -115264296 - RSINE1 SINE B4 -22 143 3 4 846 432 0 0 0 chr6 34254413 34254461 -115262576 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 846 502 279 38 23 chr6 34254472 34254604 -115262433 - RSINE1 SINE B4 -29 136 3 4 846 604 259 20 2 chr6 34254873 34255021 -115262016 - ID_B1 SINE B4 -3 221 77 4 846 270 0 0 0 chr6 34255347 34255377 -115261660 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 846 522 157 101 34 chr6 34257151 34257258 -115259779 + RLTR14 LTR ERV1 1 115 -267 4 846 1288 199 66 63 chr6 34257258 34257607 -115259430 + RMER10A LTR ERVL 1 350 -92 4 846 1685 138 11 18 chr6 34257620 34257894 -115259143 + RLTR14 LTR ERV1 111 382 0 4 846 967 134 7 0 chr6 34258172 34258314 -115258723 - B1_Mus1 SINE Alu -5 143 1 4 846 277 281 49 0 chr6 34261749 34261831 -115255206 - MER5A1 DNA MER1_type -80 86 1 4 846 402 231 44 0 chr6 34263088 34263179 -115253858 + PB1D9 SINE Alu 26 120 0 4 846 235 223 78 142 chr6 34265189 34265330 -115251707 + MER106B DNA MER1_type 922 1053 -6 4 846 1193 103 12 6 chr6 34269264 34269430 -115247607 + B2_Mm2 SINE B2 3 169 -26 4 846 642 26 0 0 chr6 34269432 34269508 -115247529 + (GAA)n Simple_repeat Simple_repeat 2 77 0 4 846 622 142 85 42 chr6 34269508 34269566 -115247471 + B1_Mur4 SINE Alu 27 84 -66 4 846 441 0 0 0 chr6 34269566 34269615 -115247422 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 846 622 142 85 42 chr6 34269615 34269674 -115247363 + B1_Mur4 SINE Alu 85 147 -3 4 846 1327 86 11 21 chr6 34269853 34269885 -115247152 - B2_Mm2 SINE B2 -6 189 160 4 846 432 0 0 0 chr6 34269885 34269933 -115247104 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 4 846 1327 86 11 21 chr6 34269933 34270090 -115246947 - B2_Mm2 SINE B2 -36 159 2 4 846 996 181 57 0 chr6 34270134 34270311 -115246726 + B3 SINE B2 23 209 -7 4 846 514 241 57 98 chr6 34270361 34270522 -115246515 + B3 SINE B2 2 182 -34 4 846 333 68 0 0 chr6 34270522 34270566 -115246471 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 846 375 241 57 98 chr6 34270566 34270597 -115246440 + B2_Mm2 SINE B2 159 186 -9 4 846 396 204 0 31 chr6 34270687 34270783 -115246254 + L1MB7 LINE L1 6084 6176 -8 4 846 278 305 106 60 chr6 34270912 34271014 -115246023 - MLT1J2 LTR MaLR -240 208 100 4 846 1404 180 174 14 chr6 34271014 34271375 -115245662 - MTD LTR MaLR 0 419 1 4 846 278 305 106 60 chr6 34271375 34271471 -115245566 - MLT1J2 LTR MaLR -349 99 1 4 846 1295 251 31 44 chr6 34271698 34272081 -115244956 + MTE2a LTR MaLR 2 379 0 4 846 600 194 136 126 chr6 34272195 34272401 -115244636 + B3 SINE B2 2 209 -7 4 846 228 351 74 49 chr6 34272432 34272594 -115244443 - Charlie9 DNA MER1_type -2591 166 1 4 846 1161 240 106 97 chr6 34272619 34272979 -115244058 + MTD LTR MaLR 57 419 0 4 846 377 190 92 33 chr6 34273046 34273166 -115243871 + MTEa LTR MaLR 249 375 -4 4 846 236 239 0 0 chr6 34273198 34273244 -115243793 + CT-rich Low_complexity Low_complexity 1 46 0 4 846 1335 219 164 76 chr6 34273822 34274256 -115242781 + RMER19C LTR ERVK 138 609 -2 4 846 235 189 130 39 chr6 34274258 34274335 -115242702 + MER96B DNA hAT 257 340 -77 4 846 342 0 0 0 chr6 34274349 34274387 -115242650 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 4 846 467 206 10 40 chr6 34274395 34274496 -115242541 - PB1D10 SINE Alu -19 98 1 4 846 421 311 0 19 chr6 34274826 34274934 -115242103 - RSINE1 SINE B4 -57 108 3 4 846 26 0 0 0 chr6 34274942 34274968 -115242069 + AT_rich Low_complexity Low_complexity 1 26 0 4 846 570 296 23 0 chr6 34275011 34275143 -115241894 - RSINE1 SINE B4 -28 137 3 4 846 1179 121 0 0 chr6 34275476 34275814 -115241223 + (TG)n Simple_repeat Simple_repeat 1 338 0 4 846 752 303 57 4 chr6 34275837 34276099 -115240938 - B4 SINE B4 -15 277 2 4 846 342 330 80 0 chr6 34276170 34276282 -115240755 - B4A SINE B4 -169 123 3 4 846 336 333 39 39 chr6 34276288 34276491 -115240546 - L2 LINE L2 -536 2883 2681 4 846 427 398 50 37 chr6 34276492 34276813 -115240224 - LTR16A LTR ERVL 0 451 127 4 846 589 299 112 33 chr6 34277795 34278037 -115239000 + Charlie24 DNA MER1_type 1186 1446 -1004 4 846 470 254 26 26 chr6 34278215 34278332 -115238705 - RSINE1 SINE B4 -45 120 4 4 846 5096 190 66 10 chr6 34279147 34280160 -115236877 + Lx5 LINE L1 5978 7047 -3 4 846 354 195 75 0 chr6 34280269 34280428 -115236609 + (TATG)n Simple_repeat Simple_repeat 4 174 0 4 846 618 261 6 42 chr6 34280455 34280623 -115236414 - RSINE1 SINE B4 0 165 4 4 846 774 187 0 35 chr6 34280657 34280801 -115236236 - B3 SINE B2 -14 202 64 4 846 362 186 0 41 chr6 34280882 34280955 -115236082 - B1_Mur2 SINE Alu -1 148 79 4 846 738 272 149 47 chr6 34281124 34281487 -115235550 + MTD LTR MaLR 19 418 -1 4 846 498 327 94 6 chr6 34281604 34281867 -115235170 + MER31A LTR ERV1 1 303 -163 4 846 1783 124 26 42 chr6 34281867 34282179 -115234858 + IAPLTR2b LTR ERVK 1 307 -20 4 846 370 285 20 46 chr6 34282191 34282356 -115234681 + MER31A LTR ERV1 298 462 -4 4 846 534 133 0 0 chr6 34282782 34282872 -115234165 + (TTCA)n Simple_repeat Simple_repeat 2 91 0 4 846 483 305 63 48 chr6 34283126 34283333 -115233704 + B3 SINE B2 2 211 -5 4 846 516 325 60 72 chr6 34283305 34283623 -115233414 + MER110A LTR ERV1 101 414 -54 4 846 497 231 61 116 chr6 34284485 34284533 -115232504 + B4 SINE B4 55 224 -67 4 846 949 114 15 0 chr6 34284533 34284665 -115232372 + B1_Mur4 SINE Alu 16 149 -1 4 846 23 0 0 0 chr6 34284705 34284728 -115232309 + AT_rich Low_complexity Low_complexity 1 23 0 4 846 693 242 11 33 chr6 34284739 34284923 -115232114 - B3A SINE B2 -16 182 3 4 846 1035 16 8 0 chr6 34285301 34285425 -115231612 + B1_Mus2 SINE Alu 23 147 0 5 846 26 0 0 0 chr6 34285772 34285798 -115231239 + AT_rich Low_complexity Low_complexity 1 26 0 5 846 639 159 46 92 chr6 34285884 34286036 -115231001 + B1_Mus2 SINE Alu 1 145 -2 5 846 507 289 0 0 chr6 34286308 34286481 -115230556 + C-rich Low_complexity Low_complexity 1 173 0 5 846 1219 48 7 0 chr6 34286517 34286663 -115230374 - B1_Mus2 SINE Alu 0 147 1 5 846 7178 196 49 9 chr6 34286671 34288226 -115228811 - Lx5 LINE L1 -1 7049 5435 5 846 627 152 34 55 chr6 34288207 34288353 -115228684 - Lx5 LINE L1 -678 5199 5057 5 846 1349 271 130 2 chr6 34288356 34288755 -115228282 + RMER20A LTR ERVK 67 516 0 5 846 2441 185 49 42 chr6 34288755 34289716 -115227321 - L1_Mur3 LINE L1 -4154 1723 816 5 846 211 330 35 35 chr6 34290091 34290207 -115226830 - L3 LINE CR1 -400 4089 3974 5 846 433 256 48 0 chr6 34290271 34290373 -115226664 + PB1D7 SINE Alu 2 110 -39 5 846 1176 37 0 0 chr6 34290465 34290600 -115226437 - B1_Mus1 SINE Alu -12 136 2 5 846 230 217 102 61 chr6 34290808 34290906 -115226131 - L3 LINE CR1 -896 3593 3492 5 846 1958 135 57 39 chr6 34291309 34291590 -115225447 + ORR1B1 LTR MaLR 56 351 -43 5 846 1636 26 16 0 chr6 34291590 34291780 -115225257 + B2_Mm2 SINE B2 1 193 -2 5 846 1958 135 57 39 chr6 34291780 34291830 -115225207 + ORR1B1 LTR MaLR 352 393 -1 5 846 373 268 16 97 chr6 34291984 34292108 -115224929 - PB1D7 SINE Alu -6 114 1 5 846 257 336 15 85 chr6 34292139 34292150 -115224887 + ID_B1 SINE B4 73 140 -84 5 846 365 324 18 44 chr6 34292150 34292263 -115224774 + B1F1 SINE Alu 1 110 -39 5 846 288 289 45 100 chr6 34294275 34294475 -115222562 + Lx3C LINE L1 6781 6969 -7 5 846 180 0 0 0 chr6 34294481 34294501 -115222536 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5 846 267 321 0 12 chr6 34294501 34294586 -115222451 + GA-rich Low_complexity Low_complexity 3 86 0 5 846 946 131 7 27 chr6 34294674 34294823 -115222214 + B1_Mur4 SINE Alu 2 147 -3 5 846 1043 279 77 40 chr6 34294840 34295292 -115221745 - MER31A LTR ERV1 0 485 17 5 846 486 0 0 0 chr6 34296014 34296068 -115220969 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 846 279 0 0 0 chr6 34296068 34296098 -115220939 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 846 279 316 74 0 chr6 34296366 34296461 -115220576 - MER5A1 DNA MER1_type -4 162 61 5 846 1388 84 16 5 chr6 34296868 34297060 -115219977 - B2_Mm2 SINE B2 0 195 2 5 846 183 42 0 0 chr6 34297179 34297203 -115219834 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 846 441 331 49 0 chr6 34297203 34297345 -115219692 - RSINE1 SINE B4 -16 149 1 5 846 306 298 55 97 chr6 34297401 34297442 -115219595 + MT2B LTR ERVL 120 154 -447 5 846 541 249 1 19 chr6 34297442 34297562 -115219475 + B1_Mus2 SINE Alu 2 119 -30 5 846 552 15 0 0 chr6 34297562 34297627 -115219410 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 846 430 299 21 35 chr6 34297627 34297648 -115219389 + B1F SINE Alu 120 141 -8 5 846 246 318 136 0 chr6 34297811 34297921 -115219116 + PB1 SINE Alu 1 125 -2 5 846 1990 96 183 6 chr6 34297984 34298318 -115218719 - ORR1B1 LTR MaLR -1 393 1 5 846 232 352 39 118 chr6 34298432 34298635 -115218402 - MLT1E2 LTR MaLR -440 187 1 5 846 216 97 0 0 chr6 34298702 34298733 -115218304 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 5 846 812 188 35 0 chr6 34298796 34298940 -115218097 + B1_Mur4 SINE Alu 2 150 0 5 846 210 91 0 0 chr6 34298946 34298979 -115218058 + (CCAA)n Simple_repeat Simple_repeat 3 35 0 5 846 335 214 0 71 chr6 34299439 34299538 -115217499 - B1F SINE Alu -9 140 53 5 846 686 179 204 11 chr6 34299841 34300022 -115217015 + B3 SINE B2 1 216 0 5 846 459 0 0 0 chr6 34300058 34300109 -115216928 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 846 333 0 0 0 chr6 34300109 34300145 -115216892 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 846 300 356 42 18 chr6 34300461 34300627 -115216410 + L1MC2 LINE L1 5732 5901 -443 5 846 297 262 172 60 chr6 34300634 34300768 -115216269 - B3A SINE B2 0 198 50 5 846 321 217 33 78 chr6 34300826 34300898 -115216139 + ID_B1 SINE B4 99 167 -57 5 846 975 190 192 49 chr6 34300898 34301246 -115215791 - RMER10B LTR ERVL 0 398 1 5 846 321 217 33 78 chr6 34301246 34301263 -115215774 + ID_B1 SINE B4 168 184 -40 5 846 206 296 0 0 chr6 34301263 34301307 -115215730 + polypurine Low_complexity Low_complexity 6 49 0 5 846 4233 42 32 0 chr6 34301333 34301836 -115215201 + MURVY-LTR LTR ERV1 1 519 0 5 846 230 291 137 30 chr6 34301944 34302075 -115214962 - RMER5 LTR ERV1 -308 226 82 5 846 289 307 105 29 chr6 34303015 34303186 -115213851 + L1M5 LINE L1 5620 5803 -321 5 846 254 125 21 0 chr6 34303508 34303556 -115213481 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 846 200 143 24 0 chr6 34303677 34303719 -115213318 + C-rich Low_complexity Low_complexity 4 46 0 5 846 790 86 0 57 chr6 34304566 34304689 -115212348 + B1_Mus1 SINE Alu 1 116 -32 5 846 506 267 53 0 chr6 34305060 34305191 -115211846 - B1F SINE Alu -1 148 11 5 846 342 263 137 0 chr6 34305723 34305818 -115211219 - PB1D10 SINE Alu -7 110 3 5 846 841 238 32 5 chr6 34306706 34306896 -115210141 + B3A SINE B2 1 195 -3 5 846 405 54 0 0 chr6 34308363 34308419 -115208618 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 5 846 520 200 0 0 chr6 34308419 34308509 -115208528 - PB1D9 SINE Alu -12 108 19 5 846 234 91 0 0 chr6 34308667 34308700 -115208337 + (TAA)n Simple_repeat Simple_repeat 3 35 0 5 846 292 153 36 132 chr6 34308709 34308792 -115208245 - B1_Mur4 SINE Alu -1 149 75 5 846 304 254 72 0 chr6 34308921 34309023 -115208014 + B4 SINE B4 82 277 -15 5 846 432 0 0 0 chr6 34309026 34309074 -115207963 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 846 276 30 0 0 chr6 34309398 34309431 -115207606 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 5 846 392 311 53 43 chr6 34310665 34310853 -115206184 + RMER15 LTR ERVL 373 562 -13 5 846 785 72 35 26 chr6 34311542 34311656 -115205381 - B1_Mur4 SINE Alu -2 148 34 5 846 283 288 104 74 chr6 34311550 34311685 -115205352 - B4A SINE B4 -72 220 82 5 846 1577 57 5 0 chr6 34312434 34312626 -115204411 - B2_Mm1t SINE B2 0 193 1 5 846 403 282 41 21 chr6 34312758 34312903 -115204134 + B1F1 SINE Alu 1 148 -1 5 846 320 209 12 0 chr6 34312958 34313044 -115203993 + CT-rich Low_complexity Low_complexity 2 88 0 5 846 1239 80 0 0 chr6 34314361 34314524 -115202513 - B2_Mm2 SINE B2 -31 164 2 5 846 1647 205 20 69 chr6 34314765 34315158 -115201879 - ORR1D1 LTR MaLR 0 374 1 5 846 304 357 97 36 chr6 34316354 34316633 -115200404 - L2a LINE L2 -168 3258 2963 5 846 192 320 59 10 chr6 34316672 34316773 -115200264 - L2a LINE L2 -529 2890 2785 5 846 873 93 271 0 chr6 34316944 34317095 -115199942 + B2_Mm1t SINE B2 1 192 -1 5 846 270 365 35 42 chr6 34317171 34317314 -115199723 + MIRc SINE MIR 17 158 -110 5 846 359 287 0 0 chr6 34317667 34317754 -115199283 + ID SINE ID 3 89 -135 5 846 338 104 130 0 chr6 34317754 34317831 -115199206 - Lx9 LINE L1 -87 7557 7471 5 846 378 138 138 0 chr6 34317829 34317909 -115199128 + Lx9 LINE L1 7553 7643 -1 5 846 620 256 36 0 chr6 34317934 34318071 -115198966 + ID_B1 SINE B4 78 219 -5 5 846 197 298 18 0 chr6 34318493 34318550 -115198487 - MIR SINE MIR -110 152 95 5 846 550 231 86 8 chr6 34319168 34319344 -115197693 - ORR1D2 LTR MaLR -3 367 163 5 846 546 109 0 29 chr6 34319344 34319448 -115197589 + (GA)n Simple_repeat Simple_repeat 1 101 0 5 846 270 257 275 42 chr6 34319448 34319590 -115197447 - ORR1D2 LTR MaLR -187 183 9 5 846 396 297 45 9 chr6 34320141 34320253 -115196784 + B1F1 SINE Alu 27 142 -7 5 846 524 276 35 0 chr6 34320270 34320415 -115196622 + RSINE1 SINE B4 4 153 -12 5 846 239 224 0 0 chr6 34321418 34321467 -115195570 - PB1 SINE Alu -29 98 50 5 846 840 55 0 9 chr6 34321534 34321643 -115195394 - B1_Mm SINE Alu 0 147 40 5 846 297 213 10 96 chr6 34321557 34321661 -115195376 - RLTR25B LTR ERVK -507 521 427 5 846 357 241 0 0 chr6 34321661 34321744 -115195293 + (CCTG)n Simple_repeat Simple_repeat 2 84 0 5 846 391 56 0 0 chr6 34321754 34321808 -115195229 - B1_Mus2 SINE Alu -93 54 1 5 846 219 114 0 0 chr6 34322307 34322342 -115194695 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 5 846 183 307 40 13 chr6 34322461 34322537 -115194500 - L4 LINE RTE 0 2029 1952 5 846 186 171 0 0 chr6 34322611 34322652 -115194385 + C-rich Low_complexity Low_complexity 2 42 0 5 846 8363 7 0 0 chr6 34322724 34323687 -115193350 - L1Md_T LINE L1 0 6582 5671 5 846 327 272 30 60 chr6 34324733 34324901 -115192136 + SUBTEL_sa Satellite Satellite 9 171 -3 5 846 586 284 0 0 chr6 34324805 34324981 -115192056 + (TCTCTG)n Simple_repeat Simple_repeat 4 179 0 5 846 208 284 26 26 chr6 34324925 34325001 -115192036 + SUBTEL_sa Satellite Satellite 9 84 -90 5 846 309 275 0 0 chr6 34325016 34325183 -115191854 + (TCTCTG)n Simple_repeat Simple_repeat 4 170 0 5 846 284 262 12 0 chr6 34325227 34325399 -115191638 + (TCTCTG)n Simple_repeat Simple_repeat 4 177 0 5 846 255 282 0 0 chr6 34325451 34325628 -115191409 + (TCTCTG)n Simple_repeat Simple_repeat 1 177 0 5 846 252 0 316 0 chr6 34325643 34325776 -115191261 + (CCTG)n Simple_repeat Simple_repeat 1 175 0 5 846 257 192 25 25 chr6 34325871 34325951 -115191086 + T-rich Low_complexity Low_complexity 4 83 0 5 846 1301 86 63 0 chr6 34326119 34326294 -115190743 + B2_Mm2 SINE B2 2 187 -8 5 846 24 53 0 0 chr6 34326404 34326442 -115190595 + AT_rich Low_complexity Low_complexity 1 38 0 5 846 294 50 0 0 chr6 34326904 34326944 -115190093 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 846 464 323 24 8 chr6 34326969 34327094 -115189943 - B4A SINE B4 -85 207 81 5 846 1211 27 0 26 chr6 34327811 34327962 -115189075 - B1_Mm SINE Alu 0 147 1 5 846 3435 63 7 16 chr6 34327983 34328431 -115188606 - L1Md_F2 LINE L1 -1 6581 6138 5 846 1312 86 40 0 chr6 34329064 34329238 -115187799 + B2_Mm2 SINE B2 1 181 -14 6 846 294 81 94 11 chr6 34329251 34329338 -115187699 + B2_Mm2 SINE B2 47 190 -5 6 846 236 40 80 0 chr6 34330038 34330088 -115186949 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 846 1213 34 0 14 chr6 34330095 34330243 -115186794 - B1_Mm SINE Alu -1 146 1 6 846 1344 139 29 5 chr6 34330441 34330651 -115186386 - RLTR17 LTR ERVK -267 425 211 6 846 3085 54 54 3 chr6 34330795 34331182 -115185855 - MTB_Mm LTR MaLR 0 407 1 6 846 3287 124 33 10 chr6 34331512 34332000 -115185037 + RLTR19 LTR ERVK 1 499 0 6 846 1083 88 126 0 chr6 34332537 34332696 -115184341 + B2_Mm1t SINE B2 1 179 -14 6 846 443 116 313 26 chr6 34332748 34332863 -115184174 + B2_Mm2 SINE B2 48 195 0 6 846 314 186 15 44 chr6 34332868 34333003 -115184034 + GA-rich Low_complexity Low_complexity 3 133 0 6 846 2933 157 57 0 chr6 34333264 34333787 -115183250 + Lx3C LINE L1 6424 6976 0 6 846 8075 91 16 2 chr6 34335323 34336841 -115180196 - Lx LINE L1 -12 6642 5107 6 846 279 0 0 0 chr6 34336876 34336907 -115180130 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 6 846 230 312 78 35 chr6 34337022 34337138 -115179899 - B4 SINE B4 -106 186 66 6 846 429 214 129 58 chr6 34337138 34337277 -115179760 - B1_Mur1 SINE Alu 0 149 1 6 846 363 265 78 10 chr6 34337354 34337457 -115179580 - RSINE1 SINE B4 -22 143 34 6 846 878 221 58 14 chr6 34339360 34339567 -115177470 + B3 SINE B2 1 216 0 6 846 225 0 0 0 chr6 34340838 34340863 -115176174 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 847 988 204 283 28 chr6 34340919 34341328 -115175709 - RMER4B LTR ERVK -73 512 1 6 847 248 321 48 0 chr6 34341328 34341410 -115175627 + B1F SINE Alu 54 139 -10 6 847 1001 168 113 0 chr6 34341785 34341988 -115175049 + URR1A DNA MER1_type 1 226 0 6 847 2627 140 21 66 chr6 34343056 34343347 -115173690 - RMER6B LTR ERVK 0 461 176 6 847 1367 86 27 5 chr6 34343347 34343535 -115173502 - B2_Mm1t SINE B2 0 193 2 6 847 2627 140 21 66 chr6 34343535 34343726 -115173311 - RMER6B LTR ERVK -286 175 1 6 847 436 317 126 33 chr6 34345176 34345447 -115171590 - L2a LINE L2 -168 3258 2963 6 847 1042 125 11 0 chr6 34345705 34345881 -115171156 + (TTTCC)n Simple_repeat Simple_repeat 2 179 0 6 847 215 292 35 97 chr6 34346180 34346324 -115170713 - MIRb SINE MIR -8 260 126 6 847 286 290 48 26 chr6 34346987 34347100 -115169937 - MIR SINE MIR -101 175 53 6 847 559 105 7 83 chr6 34347135 34347280 -115169757 + CT-rich Low_complexity Low_complexity 2 135 0 6 847 1097 92 0 0 chr6 34347526 34347679 -115169358 + B2_Mm2 SINE B2 2 154 -41 6 847 194 0 0 37 chr6 34347681 34347708 -115169329 + (TAA)n Simple_repeat Simple_repeat 2 27 0 6 847 21 0 0 0 chr6 34347737 34347758 -115169279 + AT_rich Low_complexity Low_complexity 1 21 0 6 847 981 137 0 27 chr6 34347758 34347908 -115169129 - B1_Mus2 SINE Alu 0 147 2 6 847 248 0 0 30 chr6 34347925 34347958 -115169079 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 847 1213 41 7 7 chr6 34347975 34348122 -115168915 - B1_Mm SINE Alu 0 147 1 6 847 481 336 79 30 chr6 34348334 34348662 -115168375 + LTR33A_ LTR ERVL 99 442 -89 6 847 317 169 17 0 chr6 34348953 34349012 -115168025 + B1_Mur4 SINE Alu 3 62 -88 6 847 180 179 0 0 chr6 34349099 34349138 -115167899 + CT-rich Low_complexity Low_complexity 1 39 0 6 847 276 100 0 0 chr6 34349168 34349208 -115167829 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 847 402 21 0 0 chr6 34349475 34349522 -115167515 + (TTCCC)n Simple_repeat Simple_repeat 4 50 0 6 847 233 227 11 74 chr6 34349943 34350038 -115166999 - Lx7 LINE L1 -49 7647 7559 6 847 22 0 0 0 chr6 34351516 34351538 -115165499 + AT_rich Low_complexity Low_complexity 1 22 0 6 847 571 236 124 113 chr6 34351644 34351821 -115165216 + B3A SINE B2 8 186 -9 6 847 190 89 67 0 chr6 34351930 34351975 -115165062 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 6 847 1154 68 0 7 chr6 34351975 34352123 -115164914 - B1_Mus2 SINE Alu 0 147 1 6 847 511 202 16 48 chr6 34352232 34352357 -115164680 + ID_B1 SINE B4 99 219 -5 6 847 23 33 0 0 chr6 34352728 34352758 -115164279 + AT_rich Low_complexity Low_complexity 1 30 0 6 847 295 253 50 50 chr6 34352829 34352929 -115164108 + RLTR25B LTR ERVK 1 100 -928 6 847 39 60 0 0 chr6 34354108 34354175 -115162862 + AT_rich Low_complexity Low_complexity 1 67 0 6 847 820 181 21 0 chr6 34354309 34354453 -115162584 + B1_Mur2 SINE Alu 2 148 -1 6 847 347 177 93 0 chr6 34354633 34354711 -115162326 + B1_Mur2 SINE Alu 57 143 -6 6 847 245 310 68 29 chr6 34354956 34355059 -115161978 + Charlie1b DNA MER1_type 50 156 -367 6 847 257 295 42 0 chr6 34355051 34355146 -115161891 + B1F2 SINE Alu 43 141 -8 6 847 608 214 87 60 chr6 34355253 34355437 -115161600 + Lx9 LINE L1 6961 7149 -495 6 847 262 205 87 26 chr6 34355503 34355515 -115161522 + Lx9 LINE L1 7504 7515 -129 6 847 222 37 0 0 chr6 34355515 34355542 -115161495 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 847 262 205 87 26 chr6 34355542 34355644 -115161393 + Lx9 LINE L1 7516 7625 -19 6 847 397 282 129 45 chr6 34355729 34355907 -115161130 + B3A SINE B2 4 196 -2 6 847 2575 158 79 67 chr6 34356230 34356798 -115160239 - RMER15 LTR ERVL 0 575 1 6 847 428 280 23 8 chr6 34356935 34357068 -115159969 - ID_B1 SINE B4 -1 223 89 6 847 2062 179 44 14 chr6 34358060 34358427 -115158610 - ORR1C1 LTR MaLR 0 378 1 6 847 1597 52 0 0 chr6 34358844 34359036 -115158001 - B2_Mm1t SINE B2 -1 192 1 6 847 766 272 11 0 chr6 34359766 34359950 -115157087 + ID_B1 SINE B4 39 224 0 6 847 703 262 49 0 chr6 34359957 34360140 -115156897 + B3A SINE B2 7 198 0 6 847 227 267 88 11 chr6 34361028 34361119 -115155918 + L1M5 LINE L1 5731 5828 -296 6 847 651 220 112 6 chr6 34361148 34361326 -115155711 + B3A SINE B2 2 198 0 6 847 285 231 39 0 chr6 34361670 34361748 -115155289 + GA-rich Low_complexity Low_complexity 1 81 0 6 847 499 258 0 48 chr6 34363167 34363293 -115153744 - PB1D7 SINE Alu 0 120 1 6 847 2722 43 61 0 chr6 34363316 34363642 -115153395 - ORR1A1 LTR MaLR 0 346 1 6 847 397 266 99 23 chr6 34364107 34364238 -115152799 - B1F1 SINE Alu -6 143 3 6 847 218 284 22 43 chr6 34364271 34364363 -115152674 - B1F1 SINE Alu -58 91 2 6 847 609 97 0 0 chr6 34364485 34364588 -115152449 + (TCTCTG)n Simple_repeat Simple_repeat 4 106 0 6 847 229 208 0 0 chr6 34364626 34364674 -115152363 + RMER10A LTR ERVL 1 48 -394 6 847 1154 214 5 0 chr6 34366340 34366555 -115150482 - B3 SINE B2 0 216 1 6 847 495 299 8 0 chr6 34367534 34367661 -115149376 - RSINE1 SINE B4 -36 129 2 6 847 408 118 0 0 chr6 34367774 34367842 -115149195 - RMER10A LTR ERVL 0 442 375 6 847 306 0 0 0 chr6 34368112 34368146 -115148891 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 847 381 172 11 21 chr6 34368147 34368242 -115148795 + (TA)n Simple_repeat Simple_repeat 1 94 0 6 847 265 291 117 9 chr6 34368446 34368557 -115148480 + B1F1 SINE Alu 19 141 -8 6 847 309 100 0 0 chr6 34369353 34369403 -115147634 + (T)n Simple_repeat Simple_repeat 1 50 0 6 847 222 359 120 25 chr6 34371575 34371775 -115145262 - L2a LINE L2 -173 3253 3035 6 847 207 261 362 33 chr6 34371869 34372052 -115144985 - L2a LINE L2 -518 2901 2659 6 847 223 307 29 61 chr6 34372272 34372427 -115144610 + MIR SINE MIR 31 183 -85 6 847 1472 180 41 127 chr6 34373157 34373385 -115143652 - MTC LTR MaLR -17 404 211 6 847 1221 48 0 13 chr6 34373385 34373534 -115143503 - B1_Mm SINE Alu 0 147 1 6 847 1472 180 41 127 chr6 34373534 34373745 -115143292 - MTC LTR MaLR -211 210 3 6 847 763 126 22 0 chr6 34374204 34374339 -115142698 + (GGAA)n Simple_repeat Simple_repeat 3 140 0 6 847 5907 74 3 6 chr6 34375124 34375904 -115141133 - L1Md_F2 LINE L1 -6 6576 5800 6 847 39696 44 7 1 chr6 34375911 34382417 -115134620 - L1Md_T LINE L1 0 6582 98 6 847 17243 62 16 1 chr6 34382424 34384613 -115132424 - L1_Mm LINE L1 -74 5809 3589 6 847 294 0 0 61 chr6 34385816 34385865 -115131172 + (TTG)n Simple_repeat Simple_repeat 3 48 0 6 847 494 269 17 0 chr6 34386532 34386651 -115130386 + ID_B1 SINE B4 78 198 -26 6 847 2766 116 8 17 chr6 34386854 34387336 -115129701 - RLTR28 LTR ERVL 0 524 47 6 847 1350 168 9 0 chr6 34387642 34387862 -115129175 - URR1B DNA MER1_type -3 222 1 6 847 953 51 0 12 chr6 34387880 34388010 -115129027 + B1_Mus1 SINE Alu 8 136 -12 6 847 579 96 0 0 chr6 34388010 34388093 -115128944 + (CAA)n Simple_repeat Simple_repeat 2 84 0 6 847 358 195 7 175 chr6 34388093 34388105 -115128932 + PB1 SINE Alu 118 126 -1 6 847 1699 246 43 62 chr6 34388269 34388829 -115128208 + RMER15 LTR ERVL 27 575 0 6 847 6134 165 54 30 chr6 34388863 34390247 -115126790 - ORR1C1-int LTR MaLR 0 1509 93 6 847 537 153 20 0 chr6 34390799 34390897 -115126140 - ORR1C1-int LTR MaLR -1409 100 1 6 847 1845 171 99 3 chr6 34390897 34391242 -115125795 - ORR1C1 LTR MaLR 0 378 1 6 847 317 289 25 0 chr6 34391622 34391723 -115125314 - B1F SINE Alu -9 111 1 6 847 360 357 43 7 chr6 34392234 34392375 -115124662 - ID_B1 SINE B4 0 224 79 6 847 22 0 0 0 chr6 34392384 34392406 -115124631 + AT_rich Low_complexity Low_complexity 1 22 0 6 847 213 94 0 0 chr6 34392571 34392603 -115124434 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 6 847 403 293 35 0 chr6 34394131 34394254 -115122783 + B1_Mur2 SINE Alu 3 127 -20 6 847 350 100 17 0 chr6 34394337 34394397 -115122640 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 847 4528 65 19 10 chr6 34394511 34395099 -115121938 + L1_Mus1 LINE L1 5972 6564 -3 6 847 2455 115 19 6 chr6 34395356 34395715 -115121322 - ORR1B2 LTR MaLR -1 366 3 7 847 225 0 0 0 chr6 34395721 34395746 -115121291 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 847 2564 136 8 10 chr6 34396004 34396399 -115120638 - ORR1B1 LTR MaLR 0 394 1 7 847 1205 28 14 0 chr6 34396847 34396992 -115120045 - B1_Mus2 SINE Alu 0 147 1 7 847 225 0 0 0 chr6 34397594 34397619 -115119418 + (A)n Simple_repeat Simple_repeat 1 25 0 7 847 320 311 37 9 chr6 34397929 34398036 -115119001 - PB1 SINE Alu -1 126 17 7 847 255 299 15 0 chr6 34399442 34399509 -115117528 - MTE-int LTR MaLR -1131 449 382 7 847 492 297 16 8 chr6 34401095 34401224 -115115813 + ID_B1 SINE B4 40 169 -55 7 847 305 279 13 0 chr6 34401787 34401866 -115115171 - ID4_ SINE ID -2 81 2 7 847 295 327 84 12 chr6 34402480 34402647 -115114390 - L2 LINE L2 -1957 1462 1284 7 847 419 261 79 116 chr6 34402824 34403182 -115113855 + MLT1C LTR MaLR 67 390 0 7 847 22 0 0 0 chr6 34403961 34403983 -115113054 + AT_rich Low_complexity Low_complexity 1 22 0 7 847 481 224 34 82 chr6 34406565 34406711 -115110326 + B1F SINE Alu 11 149 0 7 847 434 340 53 36 chr6 34406861 34407108 -115109929 - LTR16C LTR ERVL -10 479 229 7 847 306 217 29 14 chr6 34407795 34407865 -115109172 - RSINE1 SINE B4 -72 93 23 7 847 669 266 65 0 chr6 34407926 34408110 -115108927 + B3A SINE B2 2 197 -1 7 847 955 290 91 28 chr6 34408729 34409249 -115107788 + L1ME2 LINE L1 5442 5997 -1788 7 847 241 206 178 0 chr6 34409289 34409362 -115107675 + L1ME2 LINE L1 6078 6163 -281 7 847 435 19 0 0 chr6 34409500 34409552 -115107485 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 847 189 0 0 0 chr6 34409552 34409572 -115107465 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 847 288 0 0 0 chr6 34410132 34410164 -115106873 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 847 220 267 10 113 chr6 34410823 34410920 -115106117 - RSINE1 SINE B4 -71 94 8 7 847 1801 212 69 50 chr6 34410924 34411917 -115105120 - Lx9 LINE L1 -447 7197 6807 7 847 2512 60 25 0 chr6 34412219 34412538 -115104499 + ORR1A2 LTR MaLR 1 327 0 7 847 620 203 189 6 chr6 34413070 34413229 -115103808 + ID_B1 SINE B4 2 189 -35 7 847 351 0 0 0 chr6 34413265 34413304 -115103733 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 847 672 229 7 0 chr6 34413306 34413450 -115103587 - B3A SINE B2 -53 145 1 7 847 208 298 0 0 chr6 34413679 34413736 -115103301 + CT-rich Low_complexity Low_complexity 1 57 0 7 847 21 0 0 0 chr6 34414008 34414029 -115103008 + AT_rich Low_complexity Low_complexity 1 21 0 7 847 263 310 51 42 chr6 34414160 34414278 -115102759 - L1M5 LINE L1 -531 5709 5591 7 847 7894 25 0 0 chr6 34414330 34415225 -115101812 - L1Md_T LINE L1 0 6582 5688 7 847 326 266 200 8 chr6 34415222 34415457 -115101580 + L1MC4a LINE L1 6749 7028 -854 7 847 404 291 171 33 chr6 34415656 34415912 -115101125 + L1MC4a LINE L1 7276 7572 -310 7 847 288 0 0 0 chr6 34415912 34415944 -115101093 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 847 404 291 171 33 chr6 34415944 34416173 -115100864 + L1MC4a LINE L1 7573 7827 -55 7 847 333 159 0 0 chr6 34416359 34416422 -115100615 + CT-rich Low_complexity Low_complexity 2 64 0 7 847 182 208 0 20 chr6 34416441 34416490 -115100547 + T-rich Low_complexity Low_complexity 3 50 0 7 847 729 118 9 0 chr6 34416517 34416627 -115100410 - B1_Mur3 SINE Alu -1 148 38 7 847 324 143 0 0 chr6 34417802 34417858 -115099179 + (CACCAT)n Simple_repeat Simple_repeat 6 61 0 7 847 602 338 19 0 chr6 34417858 34418065 -115098972 - B4A SINE B4 -80 212 2 7 847 747 269 52 65 chr6 34418651 34418941 -115098096 + B4A SINE B4 3 288 -4 7 847 423 0 0 0 chr6 34418955 34419002 -115098035 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 847 225 0 0 0 chr6 34419002 34419026 -115098011 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 847 207 292 155 27 chr6 34419321 34419469 -115097568 - MIRb SINE MIR -67 201 35 7 847 627 13 0 0 chr6 34419701 34419778 -115097259 + B1_Mm SINE Alu 66 142 -5 7 847 23 54 0 0 chr6 34421079 34421116 -115095921 + AT_rich Low_complexity Low_complexity 1 37 0 7 847 528 183 125 0 chr6 34421116 34421220 -115095817 - B3 SINE B2 0 216 100 7 847 399 299 28 0 chr6 34421322 34421429 -115095608 - B3 SINE B2 -106 110 1 7 847 670 189 106 70 chr6 34421819 34422018 -115095019 - B3 SINE B2 -10 206 1 7 847 193 288 138 39 chr6 34422088 34422218 -115094819 - MIR SINE MIR -87 175 33 7 847 252 0 0 0 chr6 34422500 34422528 -115094509 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 847 380 264 161 36 chr6 34422528 34422807 -115094230 + L1MA4 LINE L1 5913 6226 -74 7 847 198 103 0 0 chr6 34422808 34422837 -115094200 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 847 400 277 36 0 chr6 34422912 34423024 -115094013 + PB1D10 SINE Alu 1 116 -1 7 847 843 182 7 0 chr6 34424010 34424158 -115092879 - B1_Mur2 SINE Alu 0 149 1 7 847 715 276 15 15 chr6 34424161 34424356 -115092681 - B3A SINE B2 -1 197 3 7 847 1322 97 16 0 chr6 34427237 34427422 -115089615 - B2_Mm2 SINE B2 -6 189 2 7 847 907 201 67 0 chr6 34427445 34427639 -115089398 - B3 SINE B2 -8 208 2 7 847 21 0 0 0 chr6 34427868 34427889 -115089148 + AT_rich Low_complexity Low_complexity 1 21 0 7 847 469 275 14 27 chr6 34428202 34428348 -115088689 + B1F1 SINE Alu 3 146 -3 7 847 360 0 0 0 chr6 34429029 34429069 -115087968 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 847 243 0 0 0 chr6 34430489 34430516 -115086521 + (TA)n Simple_repeat Simple_repeat 1 27 0 7 847 345 305 96 56 chr6 34430586 34430784 -115086253 + MER58B DNA MER1_type 135 340 -1 7 847 319 258 63 48 chr6 34431083 34431209 -115085828 - MER94 DNA AcHobo -1 133 6 7 847 289 294 120 42 chr6 34431718 34431885 -115085152 + MIR SINE MIR 2 181 -81 7 847 811 282 92 16 chr6 34432168 34432228 -115084809 + B4A SINE B4 2 75 -217 7 847 396 88 0 0 chr6 34432228 34432285 -115084752 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 7 847 811 282 92 16 chr6 34432285 34432473 -115084564 + B4A SINE B4 76 268 -24 7 847 342 67 0 0 chr6 34432479 34432524 -115084513 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 847 4077 115 37 49 chr6 34432545 34433303 -115083734 + RMER6A LTR ERVK 1 749 -7 7 847 1147 160 5 37 chr6 34433478 34433692 -115083345 + B3 SINE B2 4 210 -6 7 847 369 62 0 0 chr6 34434071 34434119 -115082918 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 847 1155 268 34 65 chr6 34434828 34435211 -115081826 - MTE2a LTR MaLR 0 379 9 7 847 760 215 136 0 chr6 34435448 34435625 -115081412 + B3 SINE B2 1 201 -15 7 847 180 0 0 0 chr6 34436461 34436481 -115080556 + (GGA)n Simple_repeat Simple_repeat 1 20 0 7 847 700 103 178 23 chr6 34439594 34439723 -115077314 + B1_Mur4 SINE Alu 2 150 0 7 847 25 31 0 0 chr6 34439761 34439793 -115077244 + AT_rich Low_complexity Low_complexity 1 32 0 7 847 483 259 187 59 chr6 34439940 34440277 -115076760 - MLT1C LTR MaLR -49 418 39 7 847 201 147 0 0 chr6 34440296 34440330 -115076707 + (CCCCCG)n Simple_repeat Simple_repeat 2 35 0 7 847 1203 254 71 43 chr6 34440355 34440618 -115076419 + L1MB8 LINE L1 5646 5923 -255 7 847 719 218 119 0 chr6 34440618 34440811 -115076226 + B3 SINE B2 1 216 0 7 847 1203 254 71 43 chr6 34440811 34441053 -115075984 + L1MB8 LINE L1 5924 6165 -13 7 847 419 265 130 91 chr6 34441907 34442115 -115074922 + RCHARR1 DNA MER1_type 1 216 -758 7 847 343 244 13 0 chr6 34444445 34444523 -115072514 - ID4 SINE ID -2 81 3 7 847 303 28 0 0 chr6 34444665 34444701 -115072336 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 847 28 48 0 0 chr6 34445705 34445747 -115071290 + AT_rich Low_complexity Low_complexity 1 42 0 7 847 305 100 20 0 chr6 34447022 34447072 -115069965 + (TTC)n Simple_repeat Simple_repeat 1 51 0 7 847 1176 50 0 0 chr6 34447074 34447214 -115069823 - B1_Mm SINE Alu -6 141 2 7 847 289 299 11 33 chr6 34447421 34447511 -115069526 + PB1D10 SINE Alu 14 101 -16 7 847 615 247 11 122 chr6 34447656 34447845 -115069192 + ID_B1 SINE B4 38 205 -19 7 847 207 69 0 0 chr6 34447853 34447882 -115069155 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 7 847 330 351 23 38 chr6 34448834 34448967 -115068070 - MER2B DNA MER2_type -13 323 193 7 847 292 298 31 50 chr6 34449174 34449333 -115067704 + L1MA6 LINE L1 6021 6176 -124 7 847 503 238 10 14 chr6 34449428 34449564 -115067473 - L1MB8 LINE L1 -190 5994 5863 7 847 569 321 154 11 chr6 34449654 34450126 -115066911 - L1MB8 LINE L1 -327 5851 5312 7 847 302 266 25 0 chr6 34450188 34450267 -115066770 - ID4_ SINE ID -1 82 2 7 847 554 211 97 0 chr6 34450291 34450405 -115066632 - B3A SINE B2 -69 129 5 7 847 338 233 127 82 chr6 34450411 34450631 -115066406 - L1MB8 LINE L1 -847 5299 5070 7 847 262 331 66 8 chr6 34450937 34451059 -115065978 - L1MB8 LINE L1 -1468 4678 4550 7 847 333 0 0 0 chr6 34451059 34451096 -115065941 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 847 913 278 45 4 chr6 34451098 34451344 -115065693 - B4A SINE B4 -23 269 14 7 847 322 268 89 0 chr6 34451596 34451708 -115065329 - L1MB8 LINE L1 -1922 4224 4103 7 847 1248 112 141 5 chr6 34452043 34452241 -115064796 - URR1A DNA MER1_type 0 226 2 7 847 193 301 90 75 chr6 34453495 34453628 -115063409 + MIR SINE MIR 88 222 -40 7 847 231 212 43 139 chr6 34453852 34453967 -115063070 + RLTR13A2 LTR ERVK 164 267 -691 7 847 1174 75 0 0 chr6 34455667 34455813 -115061224 - B1_Mm SINE Alu -1 146 1 7 847 460 241 37 101 chr6 34457092 34457341 -115059696 + MLT1A LTR MaLR 3 228 -180 7 847 349 257 177 0 chr6 34457519 34457632 -115059405 - B4 SINE B4 -74 218 86 7 847 199 114 0 43 chr6 34457639 34457685 -115059352 + CT-rich Low_complexity Low_complexity 3 46 0 7 847 311 312 157 48 chr6 34458534 34458827 -115058210 + L1MC4 LINE L1 6692 7016 -866 8 847 398 186 196 63 chr6 34459079 34459222 -115057815 + RSINE1 SINE B4 4 165 0 8 847 1582 306 23 17 chr6 34459820 34460351 -115056686 + Lx8 LINE L1 6399 6932 -541 8 847 323 301 113 134 chr6 34460375 34460517 -115056520 - RSINE1 SINE B4 -14 151 13 8 847 23 0 0 0 chr6 34460628 34460651 -115056386 + AT_rich Low_complexity Low_complexity 1 23 0 8 847 547 256 126 14 chr6 34460652 34460874 -115056163 - Lx9 LINE L1 -153 7491 7245 8 847 261 0 0 0 chr6 34462493 34462522 -115054515 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 847 432 0 0 0 chr6 34462522 34462569 -115054468 + (GA)n Simple_repeat Simple_repeat 2 49 0 8 847 192 91 0 0 chr6 34462591 34462611 -115054426 + (A)n Simple_repeat Simple_repeat 1 20 0 8 847 1085 44 73 0 chr6 34462611 34462748 -115054289 + B1_Mus2 SINE Alu 1 147 0 8 847 192 91 0 0 chr6 34462748 34462760 -115054277 + (A)n Simple_repeat Simple_repeat 1 12 0 8 847 660 84 97 61 chr6 34463291 34463405 -115053632 + B1_Mur3 SINE Alu 32 149 0 8 847 249 337 0 12 chr6 34463620 34463704 -115053333 + B4 SINE B4 5 87 -205 8 847 22 35 0 0 chr6 34463798 34463827 -115053210 + AT_rich Low_complexity Low_complexity 1 29 0 8 847 781 199 14 14 chr6 34463861 34464004 -115053033 + B1_Mur2 SINE Alu 2 144 -5 8 847 423 0 0 0 chr6 34464511 34464558 -115052479 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 847 477 287 66 0 chr6 34464559 34464695 -115052342 - RSINE1 SINE B4 -18 147 3 8 847 318 306 103 46 chr6 34465164 34465359 -115051678 - MLT1N2 LTR MaLR -73 489 284 8 847 260 325 55 96 chr6 34466229 34466447 -115050590 + LTR90B LTR LTR 3 211 -585 8 847 378 224 40 0 chr6 34467084 34467183 -115049854 + B1F SINE Alu 1 110 -10 8 847 571 106 9 26 chr6 34467415 34467531 -115049506 + (TATG)n Simple_repeat Simple_repeat 2 115 0 8 847 709 247 25 0 chr6 34467532 34467690 -115049347 - B3 SINE B2 -48 168 7 8 847 288 0 0 0 chr6 34468249 34468281 -115048756 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 847 449 34 17 0 chr6 34468283 34468342 -115048695 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 847 197 234 16 0 chr6 34469500 34469564 -115047473 + (TATG)n Simple_repeat Simple_repeat 2 66 0 8 847 602 254 29 7 chr6 34469566 34469705 -115047332 - B1_Mm SINE Alu -5 142 1 8 847 441 116 0 0 chr6 34470509 34470578 -115046459 + (GGGA)n Simple_repeat Simple_repeat 2 70 0 8 847 1205 0 14 0 chr6 34470872 34471012 -115046025 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 8 105 781 286 118 30 chr6 34471755 34472051 -115044986 + MER2 DNA MER2_type 8 329 -16 8 848 214 210 92 46 chr6 34472271 34472336 -115044701 - PB1D10 SINE Alu -1 116 49 8 848 782 246 90 10 chr6 34472358 34472559 -115044478 - ID_B1 SINE B4 -7 217 1 8 848 630 99 0 0 chr6 34472607 34472698 -115044339 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 8 848 848 206 37 74 chr6 34472814 34473029 -115044008 + B3 SINE B2 6 212 -4 8 848 282 289 14 43 chr6 34473100 34473241 -115043796 - L1MC4a LINE L1 0 7882 7746 8 848 258 349 80 35 chr6 34473308 34473507 -115043530 + MIRb SINE MIR 27 234 -34 8 848 263 407 13 47 chr6 34474027 34474259 -115042778 - Charlie19a DNA Charlie -109 277 54 8 848 186 150 0 0 chr6 34474649 34474689 -115042348 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 848 198 136 0 0 chr6 34474957 34475001 -115042036 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 848 326 225 87 119 chr6 34475054 34475180 -115041857 - B4 SINE B4 -168 124 3 8 848 253 283 83 56 chr6 34476498 34476669 -115040368 + MIR3 SINE MIR 1 179 -97 8 848 476 318 70 6 chr6 34478406 34478577 -115038460 + B4A SINE B4 2 183 -109 8 848 234 0 0 0 chr6 34478629 34478655 -115038382 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 848 260 312 65 0 chr6 34478677 34478754 -115038283 + ORR1E LTR MaLR 23 104 -255 8 848 369 0 0 0 chr6 34478816 34478857 -115038180 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 848 365 103 15 0 chr6 34479435 34479503 -115037534 + (CA)n Simple_repeat Simple_repeat 2 70 0 8 848 396 117 0 0 chr6 34480603 34480680 -115036357 + (CTTG)n Simple_repeat Simple_repeat 1 77 0 8 848 701 126 0 16 chr6 34480680 34480801 -115036236 + (TTTC)n Simple_repeat Simple_repeat 3 121 0 8 848 184 256 174 33 chr6 34480806 34480927 -115036110 + MIR SINE MIR 74 211 -51 8 848 422 178 262 49 chr6 34481634 34481817 -115035220 - L1ME4a LINE L1 -5 6119 5898 8 848 750 309 39 25 chr6 34481889 34482168 -115034869 - B4A SINE B4 -7 285 3 8 848 207 311 45 45 chr6 34482560 34482671 -115034366 + MIRb SINE MIR 7 117 -151 8 848 1094 262 63 36 chr6 34482978 34483310 -115033727 + MLT2D LTR ERVL 33 373 -41 8 848 330 182 0 0 chr6 34483312 34483378 -115033659 + (CAGA)n Simple_repeat Simple_repeat 1 66 0 8 848 453 36 0 0 chr6 34484349 34484404 -115032633 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 848 822 113 0 0 chr6 34484482 34484606 -115032431 + (TTCTC)n Simple_repeat Simple_repeat 4 127 0 8 848 1131 69 14 0 chr6 34484606 34484751 -115032286 - B1_Mus1 SINE Alu 0 148 2 8 848 202 143 41 0 chr6 34484951 34485000 -115032037 + (TA)n Simple_repeat Simple_repeat 2 52 0 8 848 195 42 0 0 chr6 34485101 34485125 -115031912 + (CAAAAA)n Simple_repeat Simple_repeat 5 28 0 8 848 808 184 0 7 chr6 34485459 34485596 -115031441 + B1_Mus2 SINE Alu 5 140 -7 8 848 180 0 0 0 chr6 34485611 34485631 -115031406 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 8 848 4351 157 34 23 chr6 34487578 34488354 -115028683 + Lx5 LINE L1 5893 6676 -374 8 848 387 195 83 24 chr6 34488438 34488522 -115028515 + MTC LTR MaLR 12 100 -321 8 848 8524 79 2 6 chr6 34488533 34490038 -115026999 - L1_Mus3 LINE L1 0 6638 5144 8 848 1955 180 0 3 chr6 34490038 34490355 -115026682 + MTC LTR MaLR 106 421 0 8 848 1026 194 23 45 chr6 34490638 34490859 -115026178 + B3 SINE B2 1 216 0 8 848 255 224 0 0 chr6 34490938 34490996 -115026041 - L1MC2 LINE L1 -15 6329 6272 8 848 319 258 19 76 chr6 34491494 34491599 -115025438 - MIR SINE MIR -38 224 126 8 848 435 322 32 26 chr6 34491900 34492056 -115024981 + LTR40a LTR ERVL 363 519 0 8 848 536 280 7 29 chr6 34492170 34492306 -115024731 + ID_B1 SINE B4 87 219 -5 8 848 366 289 15 20 chr6 34492322 34492438 -115024599 + ID4_ SINE ID 10 124 -28 8 848 606 63 0 0 chr6 34492444 34492523 -115024514 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 8 848 291 225 252 7 chr6 34492560 34492699 -115024338 - MIRb SINE MIR -82 186 14 8 848 219 300 0 0 chr6 34492797 34492857 -115024180 + GA-rich Low_complexity Low_complexity 2 61 0 8 848 480 77 0 0 chr6 34494195 34494260 -115022777 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 848 834 127 0 0 chr6 34494814 34494972 -115022065 + (GA)n Simple_repeat Simple_repeat 1 158 0 8 848 239 213 0 32 chr6 34495744 34495807 -115021230 + CT-rich Low_complexity Low_complexity 2 62 0 8 848 262 204 0 0 chr6 34495962 34496011 -115021026 + CT-rich Low_complexity Low_complexity 1 49 0 8 848 392 101 43 0 chr6 34496011 34496080 -115020957 + (TTTTC)n Simple_repeat Simple_repeat 2 73 0 8 848 1377 229 53 61 chr6 34496264 34496640 -115020397 + ORR1D1 LTR MaLR 1 373 -1 8 848 324 0 0 0 chr6 34496915 34496951 -115020086 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 848 333 0 0 0 chr6 34496995 34497032 -115020005 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 848 235 295 90 0 chr6 34497055 34497133 -115019904 - MTEa LTR MaLR -20 359 275 8 848 315 0 0 0 chr6 34497173 34497208 -115019829 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 848 1220 145 41 9 chr6 34497628 34497902 -115019135 - ORR1B1 LTR MaLR 0 394 3 8 848 483 18 0 0 chr6 34497908 34497964 -115019073 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 848 332 309 8 61 chr6 34498065 34498196 -115018841 + MER20 DNA MER1_type 26 149 -70 8 848 187 283 0 0 chr6 34499080 34499126 -115017911 + MIR SINE MIR 103 148 -114 8 848 229 338 93 50 chr6 34500007 34500147 -115016890 + MLT1D LTR MaLR 98 243 -262 1 848 295 203 81 0 chr6 34500372 34500495 -115016542 + (TGGG)n Simple_repeat Simple_repeat 3 135 0 2 848 465 313 45 53 chr6 34500502 34500745 -115016292 - MER44B DNA MER2_type -300 250 10 3 848 255 326 0 0 chr6 34501096 34501182 -115015855 - ORR1E LTR MaLR -230 129 44 4 848 257 224 0 0 chr6 34501496 34501545 -115015492 + MLT1A1 LTR MaLR 106 154 -254 5 848 859 158 0 0 chr6 34501601 34501747 -115015290 + ORR1B1 LTR MaLR 249 394 0 6 848 639 353 107 56 chr6 34504045 34504925 -115012112 - L1MEd LINE L1 -4960 1159 235 7 848 277 281 24 0 chr6 34505615 34505697 -115011340 - PB1D10 SINE Alu -33 84 1 8 848 852 128 28 14 chr6 34506090 34506233 -115010804 + B1_Mur3 SINE Alu 5 149 0 9 848 317 205 108 0 chr6 34506309 34506392 -115010645 + ID_B1 SINE B4 125 216 -8 1 848 24 0 0 0 chr6 34506471 34506495 -115010542 + AT_rich Low_complexity Low_complexity 1 24 0 1 848 1013 305 44 26 chr6 34506706 34507090 -115009947 + L3 LINE CR1 3533 3923 -566 1 848 2437 163 9 14 chr6 34507568 34508004 -115009033 - L1_Mur1 LINE L1 -412 5474 5041 1 848 558 29 0 0 chr6 34508345 34508413 -115008624 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 848 639 289 13 0 chr6 34508922 34509074 -115007963 + RSINE1 SINE B4 3 156 -9 1 848 1193 7 19 7 chr6 34509074 34509229 -115007808 + (CA)n Simple_repeat Simple_repeat 1 157 0 1 848 801 249 80 0 chr6 34509646 34509847 -115007190 - ID_B1 SINE B4 -3 221 5 1 848 180 0 0 0 chr6 34510651 34510671 -115006366 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1 848 612 286 0 19 chr6 34510908 34511065 -115005972 - RSINE1 SINE B4 -4 161 8 1 848 470 239 30 7 chr6 34511189 34511319 -115005718 + PB1D7 SINE Alu 1 130 -17 2 848 288 0 0 0 chr6 34511798 34511830 -115005207 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 2 848 7919 89 10 8 chr6 34511868 34513199 -115003838 - L1_Mus4 LINE L1 -6 6630 5300 2 848 1244 7 7 0 chr6 34513199 34513346 -115003691 - L1Md_A LINE L1 -2 6580 6433 2 848 5847 138 0 11 chr6 34513346 34513670 -115003367 - L1_Mus4 LINE L1 -584 5299 4979 2 848 482 314 156 43 chr6 34514040 34514366 -115002671 + MLT1A0 LTR MaLR 1 363 -2 2 848 1073 288 112 63 chr6 34514368 34514989 -115002048 + MLT1A0-int LTR MaLR 1 652 -1083 2 848 764 299 47 92 chr6 34514989 34515412 -115001625 + MTD LTR MaLR 1 404 -15 2 848 286 281 56 95 chr6 34515616 34515742 -115001295 + MLT1A0-int LTR MaLR 972 1092 -643 2 848 279 316 105 19 chr6 34516435 34516613 -115000424 + MIRc SINE MIR 1 188 -74 2 848 207 306 59 0 chr6 34518080 34518140 -114998897 - MER5B DNA MER1_type -29 149 87 2 848 279 0 0 0 chr6 34518140 34518171 -114998866 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 848 207 306 59 0 chr6 34518171 34518195 -114998842 - MER5B DNA MER1_type -92 86 61 2 848 301 270 14 0 chr6 34518402 34518476 -114998561 - B4 SINE B4 -2 290 216 2 848 6063 60 0 0 chr6 34518476 34519215 -114997822 - L1_Mus1 LINE L1 0 6567 5829 3 848 13056 117 23 3 chr6 34519216 34521840 -114995197 - L1Md_F LINE L1 -2816 3067 388 3 848 929 248 31 35 chr6 34521840 34522066 -114994971 - B4 SINE B4 -63 229 5 2 848 2570 78 19 21 chr6 34522536 34522914 -114994123 + L1_Mur2 LINE L1 4645 5021 -856 3 848 2861 169 132 22 chr6 34522897 34523496 -114993541 + Lx4B LINE L1 6392 7056 -2 3 848 615 27 0 0 chr6 34523582 34523655 -114993382 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 848 638 178 57 36 chr6 34523667 34523807 -114993230 - RSINE1 SINE B4 -19 146 4 3 848 290 348 94 89 chr6 34524605 34524657 -114992380 + LTR33A LTR ERVL 27 81 -439 3 848 2182 88 52 3 chr6 34524657 34524965 -114992072 - ORR1A2 LTR MaLR -4 323 1 3 848 290 348 94 89 chr6 34524965 34525114 -114991923 + LTR33A LTR ERVL 82 229 -291 3 848 938 289 36 0 chr6 34525172 34525425 -114991612 + MTE2b LTR MaLR 3 264 -115 3 848 546 43 0 0 chr6 34526685 34526754 -114990283 + (TATG)n Simple_repeat Simple_repeat 4 72 0 3 848 229 306 20 30 chr6 34528463 34528564 -114988473 - L2a LINE L2 -290 3136 3037 4 848 303 53 34 34 chr6 34529027 34529086 -114987951 + (TTTTG)n Simple_repeat Simple_repeat 1 59 0 4 848 2416 80 3 60 chr6 34532056 34532403 -114984634 - ORR1A2 LTR MaLR 0 327 1 4 848 194 245 0 0 chr6 34532724 34532773 -114984264 - MIR SINE MIR -58 204 156 4 848 206 265 0 0 chr6 34532846 34532895 -114984142 + A-rich Low_complexity Low_complexity 1 49 0 4 848 230 0 0 32 chr6 34534537 34534568 -114982469 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 848 422 140 0 10 chr6 34534702 34534803 -114982234 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 848 752 303 22 7 chr6 34534832 34535101 -114981936 - B4A SINE B4 -18 274 2 4 848 3533 15 5 0 chr6 34535500 34535894 -114981143 + MTA_Mm LTR MaLR 1 396 0 4 848 9278 34 4 1 chr6 34535894 34536989 -114980048 + MTA_Mm-int LTR MaLR 1 1098 0 4 848 3533 15 5 0 chr6 34536989 34537383 -114979654 + MTA_Mm LTR MaLR 1 396 0 4 848 346 289 0 43 chr6 34537571 34537584 -114979453 + polypyrimidine Low_complexity Low_complexity 123 135 0 4 848 529 14 14 14 chr6 34537584 34537655 -114979382 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 848 346 289 0 43 chr6 34537655 34537782 -114979255 + CT-rich Low_complexity Low_complexity 1 122 0 5 848 536 172 207 0 chr6 34537844 34537960 -114979077 - B1_Mur3 SINE Alu -8 141 2 5 848 635 285 5 46 chr6 34538309 34538526 -114978511 - MLT1C LTR MaLR 0 467 260 5 848 235 309 39 67 chr6 34538591 34538695 -114978342 + PB1D10 SINE Alu 12 112 -5 5 848 237 279 12 12 chr6 34538851 34538931 -114978106 - L1M2 LINE L1 -411 5892 5813 5 848 647 287 40 22 chr6 34539065 34539317 -114977720 - L1M2 LINE L1 -697 5600 5338 5 848 278 233 35 11 chr6 34539354 34539441 -114977596 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 848 278 330 20 10 chr6 34539596 34539697 -114977340 + L2b LINE L2 2837 2938 -481 5 848 872 249 72 36 chr6 34539857 34540136 -114976901 - B4A SINE B4 0 292 4 5 848 567 0 0 0 chr6 34540210 34540273 -114976764 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 848 223 362 0 0 chr6 34540343 34540412 -114976625 + L2b LINE L2 3307 3375 0 5 848 300 27 0 0 chr6 34540718 34540755 -114976282 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 848 1562 191 6 13 chr6 34540756 34541069 -114975968 + MTD LTR MaLR 21 331 -88 6 848 997 137 213 0 chr6 34541506 34541689 -114975348 + URR1A DNA MER1_type 5 226 0 6 848 240 296 0 0 chr6 34541776 34541847 -114975190 - MLT1C LTR MaLR -214 160 90 5 848 609 110 0 0 chr6 34542041 34542132 -114974905 + (TC)n Simple_repeat Simple_repeat 2 92 0 6 848 23 0 0 0 chr6 34542146 34542169 -114974868 + AT_rich Low_complexity Low_complexity 1 23 0 6 848 461 314 109 103 chr6 34542169 34542343 -114974694 - B3 SINE B2 -16 200 7 6 848 228 35 0 0 chr6 34542612 34542641 -114974396 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 848 313 315 47 0 chr6 34542655 34542782 -114974255 - L1MA6 LINE L1 -94 6206 6074 6 848 260 212 58 70 chr6 34542812 34542898 -114974139 - RCHARR1 DNA MER1_type -618 356 272 6 848 254 227 18 126 chr6 34543119 34543230 -114973807 - HAL1 LINE L1 -1837 670 572 6 848 602 193 67 0 chr6 34544295 34544414 -114972623 - B1_Mur1 SINE Alu 0 149 23 7 848 1113 231 152 14 chr6 34544635 34544990 -114972047 + MTD LTR MaLR 1 404 -15 7 848 458 0 35 0 chr6 34545056 34545113 -114971924 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 7 848 24 67 0 0 chr6 34545303 34545348 -114971689 + AT_rich Low_complexity Low_complexity 1 45 0 7 848 290 299 9 9 chr6 34546784 34546892 -114970145 - Tigger16a DNA Tigger -3 930 823 7 848 21 36 0 0 chr6 34547985 34548013 -114969024 + AT_rich Low_complexity Low_complexity 1 28 0 7 848 231 36 0 0 chr6 34548556 34548584 -114968453 + (CCTG)n Simple_repeat Simple_repeat 4 31 0 7 848 441 0 0 0 chr6 34550726 34550775 -114966262 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 848 1076 95 0 7 chr6 34551335 34551483 -114965554 + B1_Mus1 SINE Alu 2 148 0 7 848 675 154 0 0 chr6 34551483 34551600 -114965437 + A-rich Low_complexity Low_complexity 1 117 0 7 848 924 61 0 0 chr6 34552595 34552727 -114964310 + (GA)n Simple_repeat Simple_repeat 1 132 0 8 848 333 257 18 71 chr6 34552731 34552844 -114964193 - PB1D10 SINE Alu -10 107 1 8 848 232 213 145 16 chr6 34554409 34554471 -114962566 + B4A SINE B4 5 74 -218 8 848 340 299 55 51 chr6 34555262 34555484 -114961553 + Charlie23a DNA MER1_type 5 228 -111 8 848 212 0 36 0 chr6 34555484 34555512 -114961525 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 8 848 340 299 55 51 chr6 34555512 34555525 -114961512 + Charlie23a DNA MER1_type 229 241 -98 8 848 289 232 14 14 chr6 34555618 34555688 -114961349 + ID4 SINE ID 2 71 -12 8 848 199 250 0 0 chr6 34555873 34555921 -114961116 + L2b LINE L2 3327 3374 -1 8 848 262 216 0 86 chr6 34556111 34556192 -114960845 - MER5A DNA MER1_type -69 120 47 8 848 207 0 0 0 chr6 34556423 34556446 -114960591 + (T)n Simple_repeat Simple_repeat 1 23 0 8 848 293 155 17 0 chr6 34556717 34556775 -114960262 + CT-rich Low_complexity Low_complexity 2 60 0 8 848 533 243 43 0 chr6 34557143 34557283 -114959754 + RSINE1 SINE B4 3 148 -17 9 848 21 57 0 0 chr6 34557306 34557341 -114959696 + AT_rich Low_complexity Low_complexity 1 35 0 9 848 396 0 0 0 chr6 34557425 34557469 -114959568 + (GGGTG)n Simple_repeat Simple_repeat 4 47 0 9 848 410 328 55 21 chr6 34557572 34557809 -114959228 + MER63D DNA AcHobo 20 264 -797 9 848 360 0 0 0 chr6 34558393 34558433 -114958604 + (GA)n Simple_repeat Simple_repeat 2 41 0 9 848 205 300 49 12 chr6 34558548 34558629 -114958408 - MIRc SINE MIR -149 119 36 9 848 564 54 0 0 chr6 34559046 34559120 -114957917 + B1_Mm SINE Alu 63 136 -11 9 848 370 303 119 92 chr6 34559490 34559784 -114957253 - MLT1B LTR MaLR -1 389 88 9 848 405 0 0 0 chr6 34560206 34560251 -114956786 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 848 255 310 121 0 chr6 34560659 34560775 -114956262 - MER94 DNA AcHobo -3 131 2 9 848 288 0 0 0 chr6 34561425 34561457 -114955580 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 848 897 301 35 8 chr6 34561457 34561718 -114955319 - B4A SINE B4 -23 269 2 1 848 22 0 0 0 chr6 34562979 34563001 -114954036 + GC_rich Low_complexity Low_complexity 1 22 0 1 848 409 304 49 44 chr6 34563289 34563492 -114953545 + B4A SINE B4 2 205 -87 1 848 530 249 101 0 chr6 34564019 34564228 -114952809 - L1MC3 LINE L1 -7 7778 7549 1 848 261 0 0 0 chr6 34564256 34564285 -114952752 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 848 279 0 0 0 chr6 34566197 34566228 -114950809 + (GGA)n Simple_repeat Simple_repeat 1 31 0 1 848 687 88 10 0 chr6 34566545 34566647 -114950390 - B1_Mus2 SINE Alu 0 147 45 1 848 427 271 19 77 chr6 34566847 34567003 -114950034 - B1F1 SINE Alu -1 148 2 1 848 204 135 0 0 chr6 34567149 34567186 -114949851 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 1 848 408 187 0 0 chr6 34567307 34567382 -114949655 - BC1_Mm scRNA scRNA -77 75 1 1 848 401 315 0 20 chr6 34567938 34568090 -114948947 + L1M5 LINE L1 5518 5666 -498 1 848 252 0 0 0 chr6 34568091 34568119 -114948918 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 848 382 311 148 31 chr6 34568175 34568445 -114948592 - L1ME2 LINE L1 -184 5980 5674 1 848 198 103 0 0 chr6 34568445 34568474 -114948563 + (TATG)n Simple_repeat Simple_repeat 1 29 0 1 848 382 311 148 31 chr6 34568474 34568723 -114948314 - L1ME2 LINE L1 -491 5673 5400 1 848 528 233 97 8 chr6 34568900 34569034 -114948003 - B1F SINE Alu -3 146 1 1 848 317 348 98 35 chr6 34569053 34569562 -114947475 - L1ME2 LINE L1 -859 5287 4747 1 848 221 98 0 24 chr6 34569845 34569887 -114947150 + (TTA)n Simple_repeat Simple_repeat 1 41 0 1 848 394 304 110 99 chr6 34569892 34570184 -114946853 - HAL1 LINE L1 -562 1945 1651 1 848 435 285 84 61 chr6 34570892 34571154 -114945883 - HAL1 LINE L1 -854 1653 1386 1 848 275 248 111 58 chr6 34571316 34571487 -114945550 + RMER10A LTR ERVL 263 442 0 1 848 219 232 0 0 chr6 34571736 34571792 -114945245 + GA-rich Low_complexity Low_complexity 3 58 0 1 848 1080 317 116 25 chr6 34571818 34572455 -114944582 - LTR82B Low_complexity ERVL 0 830 136 1 848 355 254 17 26 chr6 34572408 34572525 -114944512 - LTR82B Low_complexity ERVL -697 133 18 1 848 211 321 59 12 chr6 34572624 34572709 -114944328 + B1_Mur4 SINE Alu 15 103 -47 1 848 2785 249 111 11 chr6 34575272 34576157 -114940880 + RCHARR1 DNA MER1_type 1 973 -1 1 848 848 19 19 0 chr6 34576410 34576515 -114940522 + (TCCC)n Simple_repeat Simple_repeat 3 109 0 1 848 735 12 0 0 chr6 34576515 34576599 -114940438 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 1 848 191 329 38 0 chr6 34577435 34577514 -114939523 - L2 LINE L2 -1050 2369 2288 1 848 280 364 125 19 chr6 34577545 34577862 -114939175 - L2 LINE L2 -1320 2099 1753 1 848 558 0 0 0 chr6 34577862 34577924 -114939113 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 848 280 364 125 19 chr6 34577924 34578029 -114939008 - L2 LINE L2 -1667 1752 1632 1 848 190 314 29 29 chr6 34578088 34578193 -114938844 - L2 LINE L2 -1892 1527 1423 1 848 871 183 145 15 chr6 34578867 34579067 -114937970 + URR1A DNA MER1_type 1 226 0 1 848 570 208 0 20 chr6 34579531 34579683 -114937354 + CT-rich Low_complexity Low_complexity 1 149 0 1 848 498 343 12 6 chr6 34579686 34579859 -114937178 - ID_B1 SINE B4 -4 220 47 1 848 197 178 0 22 chr6 34581411 34581457 -114935580 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 1 848 193 117 48 32 chr6 34581465 34581527 -114935510 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 848 1402 165 5 0 chr6 34581732 34581956 -114935081 - URR1B DNA MER1_type 0 225 1 1 848 829 202 119 5 chr6 34582146 34582340 -114934697 - B3 SINE B2 0 216 1 1 848 197 59 0 56 chr6 34582891 34582927 -114934110 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 848 249 196 0 0 chr6 34583207 34583263 -114933774 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 848 235 329 133 57 chr6 34584397 34584661 -114932376 + L2c LINE L2 3091 3374 -13 1 848 623 304 14 29 chr6 34585314 34585521 -114931516 + B4A SINE B4 82 285 -7 1 848 22 0 0 0 chr6 34588680 34588702 -114928335 + AT_rich Low_complexity Low_complexity 1 22 0 1 848 206 361 82 0 chr6 34589237 34589334 -114927703 + MIRm SINE MIR 48 152 -124 1 848 271 280 90 33 chr6 34590867 34590989 -114926048 - MIR3 SINE MIR -77 131 3 1 848 197 252 29 26 chr6 34591643 34591712 -114925325 - MIRb SINE MIR -178 90 24 1 848 234 286 0 35 chr6 34592800 34592887 -114924150 + MIRb SINE MIR 123 206 -62 1 848 265 250 255 7 chr6 34593347 34593500 -114923537 + ORR1E LTR MaLR 3 193 -166 1 848 477 0 0 0 chr6 34594019 34594072 -114922965 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 848 246 397 20 31 chr6 34594110 34594365 -114922672 - L2 LINE L2 -676 2743 2492 1 848 9407 48 31 3 chr6 34594486 34596357 -114920680 - L1Md_F2 LINE L1 -3 6579 4676 1 848 355 282 50 2 chr6 34596565 34596774 -114920263 + L1MA5 LINE L1 6073 6298 -5 1 848 753 262 15 45 chr6 34597618 34597818 -114919219 + ID_B1 SINE B4 3 196 -28 1 848 677 26 34 34 chr6 34597824 34597943 -114919094 + (CCCCCT)n Simple_repeat Simple_repeat 6 124 0 1 848 498 250 23 91 chr6 34598772 34598948 -114918089 + RSINE1 SINE B4 2 165 0 1 848 228 35 0 0 chr6 34598952 34598981 -114918056 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 848 228 86 103 0 chr6 34598981 34599039 -114917998 + (CAGAGA)n Simple_repeat Simple_repeat 3 66 0 1 848 656 312 5 11 chr6 34599047 34599238 -114917799 - B3A SINE B2 -5 193 4 1 848 955 173 0 13 chr6 34599272 34599424 -114917613 - B1_Mur4 SINE Alu 0 150 1 1 848 589 325 116 12 chr6 34600463 34600721 -114916316 + B4A SINE B4 1 285 -7 1 848 264 298 36 54 chr6 34600740 34600930 -114916107 + MIRc SINE MIR 6 196 -72 1 848 1886 194 52 15 chr6 34600942 34601346 -114915691 + MTD LTR MaLR 1 419 0 1 848 227 258 0 0 chr6 34601784 34601846 -114915191 + MTD LTR MaLR 246 307 -112 1 848 823 246 96 5 chr6 34602285 34602447 -114914590 + B3 SINE B2 2 165 -51 1 848 432 0 0 0 chr6 34602447 34602495 -114914542 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 848 823 246 96 5 chr6 34602495 34602520 -114914517 + B3 SINE B2 166 206 -10 1 848 297 128 0 0 chr6 34602525 34602572 -114914465 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 848 527 245 122 0 chr6 34602579 34602718 -114914319 - B3A SINE B2 -41 157 2 1 848 674 220 85 40 chr6 34602765 34602964 -114914073 + Lx7 LINE L1 7118 7325 -371 1 13 274 239 107 53 chr6 34602977 34603127 -114913910 + Lx7 LINE L1 7539 7696 0 1 849 249 207 219 41 chr6 34603246 34603392 -114913645 + Lx8 LINE L1 7302 7473 0 1 849 1538 104 31 16 chr6 34604533 34604787 -114912250 + Lx4A LINE L1 6798 7055 -3 1 849 33 25 0 0 chr6 34604787 34604827 -114912210 + AT_rich Low_complexity Low_complexity 1 40 0 1 849 212 150 24 24 chr6 34604828 34604910 -114912127 + (TTATA)n Simple_repeat Simple_repeat 5 86 0 1 849 482 222 141 22 chr6 34605355 34605539 -114911498 + B3 SINE B2 1 206 -10 1 849 549 115 124 9 chr6 34606600 34606705 -114910332 + URR1B DNA MER1_type 109 225 0 1 849 1151 268 63 23 chr6 34606719 34607130 -114909907 - Lx8 LINE L1 -249 7224 6769 1 849 575 250 15 50 chr6 34607127 34607325 -114909712 + L1_Mur3 LINE L1 4699 4889 -991 1 849 522 262 4 8 chr6 34607326 34607593 -114909444 + CT-rich Low_complexity Low_complexity 1 265 0 1 849 323 261 8 83 chr6 34607853 34607974 -114909063 - PB1D10 SINE Alu 0 117 6 1 849 258 276 184 66 chr6 34607858 34607994 -114909043 - ID_B1 SINE B4 -3 221 70 1 849 330 307 43 14 chr6 34608069 34608208 -114908829 - L1MEg LINE L1 -5921 163 21 1 849 26 0 0 0 chr6 34608958 34608984 -114908053 + AT_rich Low_complexity Low_complexity 1 26 0 1 849 298 239 16 142 chr6 34609497 34609564 -114907473 - MLT1A LTR MaLR -1 407 340 1 849 687 175 31 8 chr6 34609564 34609691 -114907346 + B1_Mur1 SINE Alu 1 130 -19 1 849 522 0 0 0 chr6 34609699 34609757 -114907280 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 849 298 239 16 142 chr6 34609757 34609807 -114907230 - MLT1A LTR MaLR -71 337 297 1 849 424 240 26 53 chr6 34609848 34610019 -114907018 - MLT1A LTR MaLR -205 169 6 1 849 190 280 92 13 chr6 34610112 34610188 -114906849 + L2c LINE L2 3287 3368 -19 1 849 224 349 61 44 chr6 34610235 34610415 -114906622 + MIRb SINE MIR 58 240 -28 1 849 450 0 0 0 chr6 34611473 34611523 -114905514 + (CATA)n Simple_repeat Simple_repeat 2 51 0 1 849 472 275 28 45 chr6 34611613 34611792 -114905245 - B4A SINE B4 -111 181 6 1 849 475 241 86 14 chr6 34611891 34612030 -114905007 + RSINE1 SINE B4 3 151 -14 1 849 21 0 0 0 chr6 34612033 34612054 -114904983 + AT_rich Low_complexity Low_complexity 1 21 0 1 849 427 287 14 22 chr6 34612457 34612472 -114904565 - ID_B1 SINE B4 -68 224 154 1 849 654 165 9 0 chr6 34612472 34612581 -114904456 - B1_Mur1 SINE Alu -32 117 8 1 849 427 287 14 22 chr6 34612581 34612595 -114904442 - ID_B1 SINE B4 -68 153 75 1 849 797 246 180 35 chr6 34612754 34613070 -114903967 - ORR1D2 LTR MaLR -8 362 1 1 849 513 88 0 0 chr6 34613363 34613443 -114903594 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 849 771 257 69 0 chr6 34615349 34615567 -114901470 + Tigger5 DNA MER2_type 1 233 -2173 1 849 1435 64 43 5 chr6 34616880 34617068 -114899969 + B2_Mm2 SINE B2 1 195 0 1 849 276 356 30 15 chr6 34617264 34617398 -114899639 + MIR SINE MIR 15 150 -112 1 849 480 240 0 0 chr6 34618246 34618346 -114898691 + B1F SINE Alu 2 101 -48 1 849 555 173 12 0 chr6 34618404 34618511 -114898526 + B3 SINE B2 2 109 -107 1 849 501 17 0 0 chr6 34618614 34618672 -114898365 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 849 794 62 9 0 chr6 34619100 34619213 -114897824 + (TCC)n Simple_repeat Simple_repeat 3 116 0 1 849 1589 229 48 5 chr6 34620057 34620452 -114896585 - MTD LTR MaLR -14 405 1 1 849 756 211 27 37 chr6 34620834 34620854 -114896183 - B3A SINE B2 -13 185 170 1 849 402 21 0 0 chr6 34620854 34620901 -114896136 + (TATG)n Simple_repeat Simple_repeat 4 50 0 2 849 843 200 12 6 chr6 34620901 34621067 -114895970 - B3 SINE B2 -49 167 1 1 849 2154 162 65 5 chr6 34623380 34623795 -114893242 - RMER10A LTR ERVL -2 440 1 2 849 348 276 25 33 chr6 34624450 34624570 -114892467 - B4 SINE B4 -22 270 152 2 849 537 262 23 15 chr6 34624571 34624703 -114892334 - B1_Mur2 SINE Alu -16 133 1 2 849 350 266 0 18 chr6 34624722 34624833 -114892204 + Charlie5 DNA MER1_type 18 126 -2498 2 849 1187 251 57 12 chr6 34624910 34625245 -114891792 - ORR1E LTR MaLR -8 351 2 2 849 332 85 0 0 chr6 34626242 34626289 -114890748 + U6 snRNA snRNA 1 47 -60 2 849 495 0 0 0 chr6 34626698 34626753 -114890284 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 849 500 45 0 15 chr6 34627460 34627528 -114889509 + (TTTTG)n Simple_repeat Simple_repeat 2 68 0 2 849 630 262 15 18 chr6 34628409 34628614 -114888423 + B3A SINE B2 9 216 0 2 849 418 222 85 0 chr6 34629245 34629367 -114887670 + PB1D10 SINE Alu 1 147 -2 2 849 619 232 66 78 chr6 34629369 34629626 -114887411 + L1MC2 LINE L1 5843 6096 -248 2 849 264 306 0 0 chr6 34629934 34629989 -114887048 + A-rich Low_complexity Low_complexity 1 55 0 2 849 546 16 0 0 chr6 34629989 34630052 -114886985 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 2 849 264 306 0 0 chr6 34630052 34630120 -114886917 + A-rich Low_complexity Low_complexity 56 123 0 2 849 459 0 0 0 chr6 34630124 34630175 -114886862 + (GGGAA)n Simple_repeat Simple_repeat 4 54 0 2 849 325 217 101 0 chr6 34630186 34630280 -114886757 - MLT1C LTR MaLR -243 147 37 2 849 1036 164 5 46 chr6 34630416 34630634 -114886403 - L1Md_F2 LINE L1 0 6582 6374 2 849 192 77 0 0 chr6 34630663 34630689 -114886348 + (A)n Simple_repeat Simple_repeat 1 26 0 2 849 246 62 0 0 chr6 34630975 34631007 -114886030 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 849 601 265 98 5 chr6 34631185 34631390 -114885647 + B4A SINE B4 21 244 -48 2 849 365 54 18 0 chr6 34631508 34631564 -114885473 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 2 849 527 200 0 60 chr6 34631564 34631676 -114885361 - PB1D9 SINE Alu -9 111 6 2 849 189 107 0 0 chr6 34631942 34631970 -114885067 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 849 222 185 0 0 chr6 34632111 34632155 -114884882 + B1F2 SINE Alu 43 86 -34 2 849 1152 126 4 0 chr6 34632998 34633257 -114883780 + (CA)n Simple_repeat Simple_repeat 1 260 0 2 849 423 0 0 0 chr6 34633257 34633304 -114883733 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 849 433 211 13 0 chr6 34633304 34633380 -114883657 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 849 533 110 11 0 chr6 34634109 34634200 -114882837 + (CA)n Simple_repeat Simple_repeat 2 93 0 2 849 21 0 0 0 chr6 34634337 34634358 -114882679 + AT_rich Low_complexity Low_complexity 1 21 0 2 849 198 118 0 0 chr6 34634416 34634450 -114882587 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 849 250 198 121 11 chr6 34634450 34634533 -114882504 - B1F SINE Alu 0 120 18 2 849 186 43 0 0 chr6 34635452 34635475 -114881562 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 849 26 30 0 0 chr6 34637136 34637169 -114879868 + AT_rich Low_complexity Low_complexity 1 33 0 2 849 610 274 125 58 chr6 34637174 34637534 -114879503 + L1MC1 LINE L1 5943 6326 -7 2 849 273 295 13 0 chr6 34639589 34639667 -114877370 + ID4_ SINE ID 2 80 -3 2 849 955 152 11 0 chr6 34640078 34640256 -114876781 + CT-rich Low_complexity Low_complexity 1 180 0 2 849 891 106 0 62 chr6 34640276 34640468 -114876569 + CT-rich Low_complexity Low_complexity 1 180 0 2 849 1330 134 81 0 chr6 34640784 34640993 -114876044 + URR1A DNA MER1_type 1 226 0 2 849 220 353 64 20 chr6 34641042 34641252 -114875785 + MIRb SINE MIR 8 232 -36 2 849 510 212 66 36 chr6 34642326 34642463 -114874574 - B3A SINE B2 -57 141 1 2 849 529 286 77 103 chr6 34642574 34642913 -114874124 + ORR1E LTR MaLR 24 353 -6 2 849 3750 32 0 0 chr6 34643092 34643526 -114873511 + L1Md_T LINE L1 6148 6581 -1 2 849 968 142 0 7 chr6 34643592 34643741 -114873296 - B1_Mur4 SINE Alu -2 148 1 2 849 22 0 0 0 chr6 34644643 34644665 -114872372 + AT_rich Low_complexity Low_complexity 1 22 0 2 849 1457 156 0 0 chr6 34645147 34645371 -114871666 + URR1B DNA MER1_type 1 224 -1 2 849 314 265 9 113 chr6 34647782 34647897 -114869140 + B3 SINE B2 101 203 -13 2 849 673 261 128 17 chr6 34648030 34648316 -114868721 + L1Md_F3 LINE L1 5507 5859 -725 2 849 599 242 92 127 chr6 34649305 34649763 -114867274 + RMER10A LTR ERVL 1 442 0 2 849 569 281 12 0 chr6 34651218 34651378 -114865659 + B3A SINE B2 7 168 -30 2 849 499 206 65 9 chr6 34652865 34652973 -114864064 - RSINE1 SINE B4 -40 125 12 2 849 693 331 60 52 chr6 34653066 34653688 -114863349 - RLTR6-int LTR ERV1 -3943 3613 2987 2 849 348 288 104 61 chr6 34653733 34653896 -114863141 - RLTR6-int LTR ERV1 -5999 1779 1538 2 849 2939 110 2 65 chr6 34654657 34655116 -114861921 - RLTR23 LTR ERV1 0 430 1 2 849 266 224 143 43 chr6 34656006 34656076 -114860961 + ID4_ SINE ID 4 80 -3 2 849 369 0 0 0 chr6 34656215 34656256 -114860781 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 849 23 33 0 0 chr6 34656408 34656438 -114860599 + AT_rich Low_complexity Low_complexity 1 30 0 2 849 311 74 0 36 chr6 34657277 34657333 -114859704 + (CAGAGA)n Simple_repeat Simple_repeat 2 55 0 2 849 474 335 74 70 chr6 34657516 34658013 -114859024 - MLT1D LTR MaLR -6 499 1 2 849 216 274 0 0 chr6 34659709 34659760 -114857277 + CT-rich Low_complexity Low_complexity 3 53 0 2 849 255 61 0 0 chr6 34661081 34661114 -114855923 + (TCCCC)n Simple_repeat Simple_repeat 1 33 0 2 849 965 208 23 33 chr6 34662383 34662597 -114854440 + B3 SINE B2 5 216 0 2 849 202 220 0 20 chr6 34663027 34663059 -114853978 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 849 537 16 0 0 chr6 34663059 34663121 -114853916 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 849 202 220 0 20 chr6 34663121 34663139 -114853898 + (TG)n Simple_repeat Simple_repeat 2 18 0 2 849 470 85 10 31 chr6 34663157 34663254 -114853783 + (TG)n Simple_repeat Simple_repeat 1 95 0 2 849 373 311 110 77 chr6 34663261 34663533 -114853504 - B4 SINE B4 -11 281 1 2 849 231 311 112 37 chr6 34664254 34664361 -114852676 - L2b LINE L2 0 3375 3261 2 849 432 0 0 0 chr6 34664429 34664477 -114852560 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 849 503 261 50 92 chr6 34665949 34666211 -114850826 + ORR1E LTR MaLR 19 269 -90 2 849 490 273 182 56 chr6 34667104 34667515 -114849522 - MLT1C LTR MaLR 0 467 5 2 849 243 232 0 0 chr6 34668211 34668267 -114848770 - MLT1C LTR MaLR 0 505 450 2 849 500 265 58 79 chr6 34668281 34668550 -114848487 + L1MC1 LINE L1 5747 6004 -340 2 849 252 261 80 18 chr6 34668869 34668982 -114848055 + L1MC1 LINE L1 6188 6307 -26 2 849 335 280 197 18 chr6 34669042 34669260 -114847777 - MLT1C LTR MaLR -172 295 39 2 849 579 227 11 3 chr6 34669944 34670087 -114846950 + B4A SINE B4 2 145 -147 2 849 312 27 0 0 chr6 34670144 34670181 -114846856 + (CATATA)n Simple_repeat Simple_repeat 1 37 0 2 849 23 0 0 0 chr6 34670204 34670227 -114846810 + AT_rich Low_complexity Low_complexity 1 23 0 2 849 284 143 18 0 chr6 34670305 34670361 -114846676 + (ATG)n Simple_repeat Simple_repeat 3 59 0 2 849 323 296 84 0 chr6 34670370 34670512 -114846525 - MIR SINE MIR 0 262 109 2 849 200 333 40 57 chr6 34671684 34671808 -114845229 + MIRb SINE MIR 103 224 -44 2 849 241 158 0 0 chr6 34672146 34672184 -114844853 + GA-rich Low_complexity Low_complexity 1 38 0 2 849 575 133 0 72 chr6 34672186 34672380 -114844657 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 2 849 187 299 172 7 chr6 34673522 34673667 -114843370 + MER5B DNA MER1_type 1 169 -9 2 849 359 316 117 12 chr6 34674487 34674734 -114842303 + ORR1D2 LTR MaLR 1 273 -97 2 849 819 242 36 10 chr6 34674798 34674994 -114842043 - B3 SINE B2 -14 202 2 2 849 239 261 33 33 chr6 34675004 34675095 -114841942 + ORR1D2 LTR MaLR 289 379 0 2 849 247 306 93 0 chr6 34675145 34675253 -114841784 + Tigger7 DNA MER2_type 1 118 -2373 2 849 395 314 134 0 chr6 34675246 34675440 -114841597 + Tigger7 DNA MER2_type 2271 2490 -1 2 849 192 40 0 0 chr6 34676360 34676385 -114840652 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 849 300 338 29 29 chr6 34677749 34677889 -114839148 - L1MB8 LINE L1 -11 6167 6028 2 849 894 236 24 14 chr6 34678214 34678425 -114838612 + B3 SINE B2 1 213 -3 2 849 603 0 0 0 chr6 34678739 34678806 -114838231 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 2 849 648 193 104 0 chr6 34678806 34678931 -114838106 - B1_Mur1 SINE Alu -9 140 2 2 849 273 354 88 12 chr6 34679034 34679194 -114837843 - MER58A DNA MER1_type -52 172 1 2 849 303 28 0 0 chr6 34679490 34679526 -114837511 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 849 353 302 132 35 chr6 34679920 34680177 -114836860 + L2c LINE L2 2916 3197 -190 2 849 274 326 58 53 chr6 34682766 34682793 -114834244 - B2_Mm1t SINE B2 -3 190 161 2 849 309 26 0 0 chr6 34682793 34682831 -114834206 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 849 635 241 62 6 chr6 34682831 34682991 -114834046 - B3A SINE B2 -33 160 2 2 849 545 108 116 9 chr6 34683254 34683366 -114833671 + Lx3_Mus LINE L1 6881 7004 -5 2 849 564 15 0 0 chr6 34684699 34684764 -114832273 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 849 223 28 0 53 chr6 34685294 34685332 -114831705 + (TAA)n Simple_repeat Simple_repeat 3 38 0 2 849 185 140 0 23 chr6 34685948 34685992 -114831045 + A-rich Low_complexity Low_complexity 2 44 0 2 849 201 74 0 0 chr6 34686027 34686054 -114830983 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 849 286 228 0 60 chr6 34686054 34686131 -114830906 - Lx7 LINE L1 -379 7317 7244 2 849 188 173 39 0 chr6 34686158 34686210 -114830827 + CT-rich Low_complexity Low_complexity 2 55 0 2 849 641 176 7 0 chr6 34686209 34686351 -114830686 + (TGG)n Simple_repeat Simple_repeat 1 143 0 2 849 329 254 0 15 chr6 34686355 34686423 -114830614 - ID4_ SINE ID -14 69 3 3 849 213 264 0 19 chr6 34686488 34686542 -114830495 - B4 SINE B4 -152 140 88 3 849 235 304 99 21 chr6 34687253 34687394 -114829643 - Tigger14a DNA MER2_type -53 271 120 3 849 778 138 131 0 chr6 34688254 34688384 -114828653 + B1_Mus2 SINE Alu 1 147 0 3 849 236 53 0 26 chr6 34688391 34688430 -114828607 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3 849 366 134 0 0 chr6 34688584 34688651 -114828386 + (TATG)n Simple_repeat Simple_repeat 4 70 0 3 849 341 248 39 8 chr6 34688654 34688784 -114828253 + (TG)n Simple_repeat Simple_repeat 2 135 0 3 849 587 277 63 36 chr6 34688835 34689056 -114827981 - B4A SINE B4 -51 241 15 3 849 221 246 53 0 chr6 34689842 34689899 -114827138 + L2 LINE L2 2433 2492 -927 3 849 355 292 161 21 chr6 34690572 34690827 -114826210 + B4 SINE B4 2 292 0 3 849 360 64 0 0 chr6 34690865 34690912 -114826125 + (CACAG)n Simple_repeat Simple_repeat 1 47 0 3 849 396 0 0 0 chr6 34691021 34691065 -114825972 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 849 224 313 0 0 chr6 34691139 34691206 -114825831 - B4A SINE B4 -224 68 2 3 849 21 0 0 0 chr6 34691609 34691630 -114825407 + AT_rich Low_complexity Low_complexity 1 21 0 3 849 213 258 81 0 chr6 34692054 34692116 -114824921 - B1F SINE Alu -4 145 79 3 849 202 0 0 83 chr6 34692197 34692233 -114824804 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 3 849 1290 102 11 0 chr6 34692500 34692676 -114824361 + B2_Mm1t SINE B2 2 179 -14 3 849 347 126 14 0 chr6 34692726 34692791 -114824246 + B2_Mm2 SINE B2 46 116 -82 3 849 785 107 8 0 chr6 34692813 34692935 -114824102 + (GGAA)n Simple_repeat Simple_repeat 1 123 0 3 849 522 268 42 7 chr6 34693420 34693563 -114823474 + B1F1 SINE Alu 2 149 0 3 849 21 57 0 0 chr6 34694461 34694496 -114822541 + AT_rich Low_complexity Low_complexity 1 35 0 3 849 700 191 14 47 chr6 34694496 34694644 -114822393 - B1_Mur2 SINE Alu -6 143 1 3 849 435 233 21 7 chr6 34694646 34694760 -114822277 - B4A SINE B4 -63 229 117 3 849 346 344 0 18 chr6 34696309 34696472 -114820565 + GA-rich Low_complexity Low_complexity 2 161 0 3 849 186 43 0 0 chr6 34697198 34697221 -114819816 + (A)n Simple_repeat Simple_repeat 1 23 0 3 849 1090 231 27 50 chr6 34698124 34698421 -114818616 + B4A SINE B4 3 292 0 3 849 326 175 0 12 chr6 34698421 34698502 -114818535 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 849 453 217 7 21 chr6 34700098 34700239 -114816798 + CT-rich Low_complexity Low_complexity 2 140 0 3 849 393 22 0 0 chr6 34700559 34700605 -114816432 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 849 324 94 0 0 chr6 34701522 34701575 -114815462 + (T)n Simple_repeat Simple_repeat 1 53 0 3 849 211 182 0 0 chr6 34704133 34704166 -114812871 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 849 276 30 0 0 chr6 34704166 34704199 -114812838 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 849 209 235 20 0 chr6 34704978 34705029 -114812008 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 3 849 701 247 65 25 chr6 34706050 34706249 -114810788 + ID_B1 SINE B4 13 219 -5 3 849 216 158 0 0 chr6 34706250 34706288 -114810749 + (TAA)n Simple_repeat Simple_repeat 3 40 0 3 849 254 193 0 50 chr6 34706344 34706404 -114810633 - MIR SINE MIR -114 148 92 3 849 451 216 76 69 chr6 34706507 34706651 -114810386 + B1F SINE Alu 5 149 0 3 849 406 288 62 50 chr6 34706740 34706901 -114810136 - RSINE1 SINE B4 0 165 3 3 849 224 301 104 55 chr6 34707654 34707837 -114809200 - MIRb SINE MIR -36 232 41 3 849 725 275 174 19 chr6 34708245 34708556 -114808481 - MLT1A0 LTR MaLR 0 365 7 3 849 387 196 100 30 chr6 34708924 34709024 -114808013 + B3 SINE B2 106 212 -4 3 849 623 243 57 0 chr6 34709053 34709193 -114807844 + B1F SINE Alu 2 149 0 3 849 477 339 63 66 chr6 34710939 34710995 -114806042 - MLT1A0 LTR MaLR -2 363 315 3 849 506 266 0 0 chr6 34710995 34711104 -114805933 + PB1D10 SINE Alu 2 110 -7 3 849 233 29 29 0 chr6 34711105 34711139 -114805898 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 3 849 477 339 63 66 chr6 34711139 34711412 -114805625 - MLT1A0 LTR MaLR -51 314 33 3 849 205 98 0 47 chr6 34711494 34711537 -114805500 + (TCTCCC)n Simple_repeat Simple_repeat 4 44 0 3 849 1111 83 7 0 chr6 34711544 34711688 -114805349 - B1_Mus2 SINE Alu 0 147 3 3 849 180 0 0 0 chr6 34711688 34711708 -114805329 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 849 369 0 0 0 chr6 34713875 34713916 -114803121 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 849 629 250 20 0 chr6 34713947 34714099 -114802938 + B4A SINE B4 126 280 -12 3 849 430 127 18 18 chr6 34714103 34714215 -114802822 + (TCTCTG)n Simple_repeat Simple_repeat 2 113 0 3 849 236 254 18 0 chr6 34714237 34714292 -114802745 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 849 754 264 66 37 chr6 34714330 34714542 -114802495 + B4 SINE B4 42 262 -30 3 849 306 0 0 0 chr6 34714542 34714576 -114802461 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 849 754 264 66 37 chr6 34714576 34714607 -114802430 + B4 SINE B4 263 292 0 3 849 1158 173 5 10 chr6 34715400 34715604 -114801433 - B3 SINE B2 0 216 14 3 849 320 280 161 50 chr6 34715740 34715939 -114801098 - MT2A LTR ERVL -151 382 162 3 849 30 45 0 0 chr6 34716772 34716816 -114800221 + AT_rich Low_complexity Low_complexity 1 44 0 3 849 462 146 44 22 chr6 34717153 34717244 -114799793 - B1_Mm SINE Alu 0 147 55 3 849 24 32 0 0 chr6 34717732 34717763 -114799274 + AT_rich Low_complexity Low_complexity 1 31 0 3 849 284 330 0 0 chr6 34721595 34721698 -114795339 - MIR SINE MIR -97 165 63 3 849 1091 204 24 0 chr6 34721714 34721925 -114795112 + B3 SINE B2 1 216 0 3 849 183 132 0 0 chr6 34722647 34722654 -114794383 + (TAAAAA)n Simple_repeat Simple_repeat 1 7 0 3 849 1194 60 0 26 chr6 34722654 34722808 -114794229 + B1_Mur4 SINE Alu 1 150 0 3 849 183 132 0 0 chr6 34722808 34722838 -114794199 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 3 849 208 0 62 0 chr6 34725590 34725622 -114791415 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 849 735 167 0 0 chr6 34725625 34725739 -114791298 - ID_B1 SINE B4 -10 214 101 3 849 243 265 96 0 chr6 34726129 34726212 -114790825 - MER5A DNA MER1_type -94 95 5 3 849 200 327 0 0 chr6 34726215 34726267 -114790770 + polypyrimidine Low_complexity Low_complexity 1 52 0 3 849 400 268 124 30 chr6 34726456 34726625 -114790412 - MER5A DNA MER1_type 0 189 5 3 849 495 344 28 19 chr6 34726710 34726926 -114790111 - MIR SINE MIR -37 225 8 3 849 186 43 0 0 chr6 34726971 34726994 -114790043 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 849 219 204 0 0 chr6 34727148 34727197 -114789840 + GA-rich Low_complexity Low_complexity 1 49 0 3 849 1353 52 0 0 chr6 34727774 34727948 -114789089 - L1Md_A LINE L1 0 6582 6409 3 849 889 129 30 0 chr6 34728074 34728206 -114788831 + B2_Mm2 SINE B2 4 139 -56 3 849 217 228 257 76 chr6 34728518 34728689 -114788348 + L2a LINE L2 3119 3320 -106 3 849 306 0 0 0 chr6 34728879 34728913 -114788124 + (CATA)n Simple_repeat Simple_repeat 2 35 0 3 849 239 0 32 0 chr6 34729017 34729048 -114787989 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 849 295 309 44 35 chr6 34729234 34729348 -114787689 - MLT1A LTR MaLR -182 192 78 3 849 31 0 0 0 chr6 34731706 34731737 -114785300 + AT_rich Low_complexity Low_complexity 1 31 0 3 849 312 226 0 23 chr6 34731810 34731896 -114785141 - Lx9 LINE L1 -171 7473 7390 3 849 237 209 110 0 chr6 34732425 34732516 -114784521 + Lx9 LINE L1 7537 7637 -7 3 849 483 63 0 0 chr6 34732779 34732842 -114784195 + (GGA)n Simple_repeat Simple_repeat 3 65 0 3 849 2127 70 52 16 chr6 34733078 34733385 -114783652 - ORR1A3 LTR MaLR -8 318 1 3 850 2709 66 6 8 chr6 34734082 34734447 -114782590 + L1_Mus3 LINE L1 6274 6637 -1 3 850 617 254 8 0 chr6 34734579 34734709 -114782328 - MTD LTR MaLR 0 419 289 3 850 1574 52 0 15 chr6 34734770 34734965 -114782072 + B2_Mm1a SINE B2 2 193 0 3 850 321 208 116 8 chr6 34735468 34735589 -114781448 - MER33 DNA MER1_type -14 310 177 3 850 539 226 17 17 chr6 34735703 34735820 -114781217 + PB1D10 SINE Alu 1 117 0 3 850 675 118 43 14 chr6 34736521 34736659 -114780378 + Lx LINE L1 6513 6654 0 3 850 25 31 0 0 chr6 34737486 34737518 -114779519 + AT_rich Low_complexity Low_complexity 1 32 0 3 850 282 29 0 0 chr6 34737546 34737581 -114779456 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 850 245 29 29 0 chr6 34738823 34738857 -114778180 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 850 195 152 0 0 chr6 34739462 34739508 -114777529 + T-rich Low_complexity Low_complexity 1 46 0 3 850 7412 97 117 7 chr6 34739747 34740987 -114776050 - Lx3B LINE L1 -11 6962 5587 3 850 229 133 0 0 chr6 34741003 34741048 -114775989 + L1M4 LINE L1 4352 4396 -1744 3 850 756 240 152 92 chr6 34741050 34741399 -114775638 + MTD LTR MaLR 50 419 0 3 850 381 295 64 45 chr6 34741400 34741556 -114775481 + L1M4 LINE L1 4585 4743 -1403 3 850 347 241 6 147 chr6 34741580 34741750 -114775287 + MT2B2 LTR ERVL 119 264 -320 3 850 805 137 21 21 chr6 34741644 34741786 -114775251 + B1_Mur3 SINE Alu 7 148 -1 3 850 418 194 208 30 chr6 34741823 34742025 -114775012 + L1M4 LINE L1 4872 5109 -1037 3 850 1167 75 0 0 chr6 34742052 34742199 -114774838 + B1_Mm SINE Alu 1 147 0 3 850 273 375 10 0 chr6 34742547 34742651 -114774386 + ID_B1 SINE B4 72 176 -48 3 850 358 247 61 20 chr6 34742566 34742665 -114774372 + PB1D7 SINE Alu 10 112 -8 3 850 624 274 132 26 chr6 34743108 34743381 -114773656 + MTEa LTR MaLR 76 377 -2 4 850 767 233 0 7 chr6 34744889 34745036 -114772001 - B1_Mur1 SINE Alu -2 147 2 4 850 454 279 158 25 chr6 34745037 34745353 -114771684 - L1MCc LINE L1 -3939 3083 2726 4 850 453 235 29 10 chr6 34745374 34745477 -114771560 + PB1D10 SINE Alu 6 110 -7 4 850 833 222 53 24 chr6 34745484 34745692 -114771345 + B3 SINE B2 3 216 0 4 850 1159 58 0 0 chr6 34745720 34745857 -114771180 + B1_Mm SINE Alu 2 138 -9 4 850 24 0 0 0 chr6 34745870 34745894 -114771143 + AT_rich Low_complexity Low_complexity 1 24 0 4 850 524 216 78 49 chr6 34745936 34746140 -114770897 - Lx4B LINE L1 -939 6119 5910 4 850 472 339 153 57 chr6 34746146 34747121 -114769916 - L1MCc LINE L1 -5154 1974 828 4 850 474 264 96 48 chr6 34747516 34747703 -114769334 - B3A SINE B2 -1 197 2 4 850 323 288 47 7 chr6 34747960 34748137 -114768900 - L1M5 LINE L1 -3094 3052 2870 4 850 304 351 88 29 chr6 34750486 34750656 -114766381 + MIRb SINE MIR 31 210 -58 4 850 345 306 42 66 chr6 34751156 34751272 -114765765 + L1MD3 LINE L1 7729 7833 -162 4 850 2406 81 6 20 chr6 34751272 34751623 -114765414 + L1_Mus3 LINE L1 6293 6638 0 4 850 345 306 42 66 chr6 34751623 34751765 -114765272 + L1MD3 LINE L1 7834 7981 -14 4 850 1648 219 67 36 chr6 34754752 34755258 -114761779 - RLTR20A LTR ERVK -4 537 1 4 850 646 196 156 21 chr6 34755267 34755647 -114761390 + L1ME1 LINE L1 2694 3136 -3010 4 850 1495 95 74 19 chr6 34755657 34755914 -114761123 + Lx3_Mus LINE L1 6734 7004 -5 4 850 522 319 7 22 chr6 34756384 34756522 -114760515 + RSINE1 SINE B4 13 148 -17 4 850 1261 323 48 36 chr6 34756527 34756800 -114760237 + Lx7 LINE L1 6695 6981 -715 4 850 1484 48 21 0 chr6 34756800 34756988 -114760049 + B2_Mm2 SINE B2 2 193 -2 4 850 1261 323 48 36 chr6 34756988 34757325 -114759712 + Lx7 LINE L1 6982 7312 -384 4 850 248 194 32 0 chr6 34757325 34757387 -114759650 + (TTG)n Simple_repeat Simple_repeat 2 65 0 4 850 21 57 0 0 chr6 34757505 34757540 -114759497 + AT_rich Low_complexity Low_complexity 1 35 0 4 850 24 67 0 0 chr6 34757650 34757695 -114759342 + AT_rich Low_complexity Low_complexity 1 45 0 4 850 6984 51 17 11 chr6 34757748 34758989 -114758048 - L1Md_F2 LINE L1 -13 6569 5318 4 850 379 281 165 26 chr6 34759252 34759739 -114757298 + L1ME1 LINE L1 4213 4770 -1376 4 850 1416 268 36 3 chr6 34759947 34760303 -114756734 + MTE2b LTR MaLR 1 368 -11 4 850 309 176 0 117 chr6 34760535 34760612 -114756425 - ORR1B2 LTR MaLR -8 359 292 4 850 1291 191 131 3 chr6 34760822 34761105 -114755932 - ORR1B2 LTR MaLR -48 319 1 4 850 882 287 71 48 chr6 34761105 34761712 -114755325 + L1ME1 LINE L1 5343 5963 -216 4 850 382 245 157 0 chr6 34762107 34762209 -114754828 + PB1D7 SINE Alu 3 120 0 4 850 236 200 135 101 chr6 34762382 34762402 -114754635 + B1F SINE Alu 29 144 0 4 850 254 266 0 0 chr6 34762402 34762466 -114754571 + ID_B1 SINE B4 160 223 -1 4 850 1216 54 0 0 chr6 34763564 34763711 -114753326 + B1_Mus2 SINE Alu 1 147 0 4 850 263 299 12 61 chr6 34763736 34763818 -114753219 + PB1D10 SINE Alu 40 117 0 4 850 620 211 13 72 chr6 34763865 34764018 -114753019 - B1_Mm SINE Alu -1 146 3 4 850 1673 263 59 28 chr6 34765065 34765739 -114751298 - L1MC1 LINE L1 -13 6320 5626 4 850 255 274 199 5 chr6 34765990 34766206 -114750831 - L1MB1 LINE L1 -30 6159 5902 4 850 422 261 30 28 chr6 34766397 34766539 -114750498 - L1M3 LINE L1 -924 4953 4841 4 850 25 51 0 0 chr6 34766977 34767016 -114750021 + AT_rich Low_complexity Low_complexity 1 39 0 4 850 377 318 9 0 chr6 34767724 34767834 -114749203 + PB1D10 SINE Alu 1 111 -6 4 850 449 213 57 29 chr6 34768208 34768348 -114748689 + L1MC2 LINE L1 5403 5546 -798 4 850 543 270 152 10 chr6 34768360 34768558 -114748479 - RMER15 LTR ERVL -14 561 336 4 850 245 294 144 19 chr6 34768689 34768793 -114748244 - RMER15 LTR ERVL -458 117 1 4 850 312 226 148 77 chr6 34768872 34769054 -114747983 - RMER15-int LTR ERVL -124 4875 4681 4 850 547 298 42 5 chr6 34769169 34769385 -114747652 - RMER15-int LTR ERVL -4371 628 405 4 850 548 123 457 13 chr6 34769806 34769843 -114747194 + URR1A DNA MER1_type 8 224 -1 4 850 282 245 97 26 chr6 34769843 34769956 -114747081 - CYRA11_Mm Unknown Y-chromosome -325 292 172 4 850 198 50 24 48 chr6 34770010 34770052 -114746985 + (GAAAA)n Simple_repeat Simple_repeat 1 41 0 4 850 549 243 143 11 chr6 34770985 34771160 -114745877 - RMER15-int LTR ERVL -4587 412 215 4 850 465 202 144 31 chr6 34771316 34771526 -114745511 + L1MC2 LINE L1 5636 5869 -475 4 850 520 261 213 13 chr6 34772068 34772453 -114744584 + L1MC2 LINE L1 5874 6335 -9 4 850 234 337 30 30 chr6 34773237 34773338 -114743699 - MIR3 SINE MIR -49 159 59 4 850 228 276 53 127 chr6 34773369 34773570 -114743467 - L2a LINE L2 0 3426 3189 4 850 300 296 24 55 chr6 34773952 34774078 -114742959 - MLT1H LTR MaLR -388 161 58 4 850 253 265 162 10 chr6 34774315 34774414 -114742623 - MLT1H-int LTR MaLR -233 1176 1063 4 850 226 239 0 0 chr6 34774429 34774475 -114742562 - ID SINE ID -150 74 29 4 850 232 307 150 24 chr6 34775277 34775444 -114741593 + L1M4b LINE L1 227 414 -6920 4 850 611 350 25 16 chr6 34775621 34776056 -114740981 + L1M4b LINE L1 633 1071 -6263 4 850 2807 120 205 31 chr6 34776160 34776746 -114740291 - RMER6C LTR ERVK 0 690 3 4 850 252 86 0 0 chr6 34777295 34777330 -114739707 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 850 4289 34 110 0 chr6 34777332 34777861 -114739176 - LTRIS_Mus LTR ERV1 0 587 1 4 850 480 285 24 37 chr6 34778365 34778529 -114738508 + RSINE1 SINE B4 3 164 -1 4 850 1169 76 0 0 chr6 34778570 34778715 -114738322 - B1_Mus2 SINE Alu -2 145 1 4 850 23 33 0 0 chr6 34778717 34778747 -114738290 + AT_rich Low_complexity Low_complexity 1 30 0 4 850 12410 140 16 18 chr6 34778790 34781780 -114735257 - Lx4B LINE L1 0 6976 3945 4 850 42 20 0 0 chr6 34781993 34782042 -114734995 + AT_rich Low_complexity Low_complexity 1 49 0 4 850 198 0 0 0 chr6 34782732 34782754 -114734283 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 850 317 167 0 18 chr6 34782967 34783022 -114734015 - HAL1-3A_ME LINE L1 -846 2012 1959 4 850 6446 79 48 8 chr6 34783033 34783929 -114733108 - Lx3_Mus LINE L1 0 7009 6078 4 850 2316 41 66 0 chr6 34783933 34784250 -114732787 - ORR1A1 LTR MaLR -8 338 1 4 850 192 40 0 0 chr6 34785080 34785105 -114731932 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 850 24 91 0 0 chr6 34786013 34786079 -114730958 + AT_rich Low_complexity Low_complexity 1 66 0 4 850 22 0 0 0 chr6 34786085 34786107 -114730930 + AT_rich Low_complexity Low_complexity 1 22 0 4 850 333 0 0 0 chr6 34786440 34786477 -114730560 + (CTG)n Simple_repeat Simple_repeat 2 38 0 4 850 263 267 0 0 chr6 34786503 34786563 -114730474 - ID4_ SINE ID -21 62 3 4 850 390 89 18 0 chr6 34787047 34787103 -114729934 - Lx3_Mus LINE L1 -779 6230 6174 4 850 8257 66 6 5 chr6 34787162 34788381 -114728656 - L1Md_F2 LINE L1 -12 6570 5371 4 850 287 237 52 13 chr6 34788900 34788977 -114728060 + B3A SINE B2 1 80 -118 4 850 219 313 101 0 chr6 34789122 34789221 -114727816 + MIRc SINE MIR 84 192 -76 4 850 244 294 138 32 chr6 34790063 34790281 -114726756 + L1ME1 LINE L1 5845 6085 -94 4 850 550 333 77 32 chr6 34790343 34790786 -114726251 - L2 LINE L2 -922 2497 2035 4 850 22 0 0 0 chr6 34791817 34791839 -114725198 + AT_rich Low_complexity Low_complexity 1 22 0 4 850 8503 138 11 55 chr6 34792476 34793992 -114723045 - Lx2B LINE L1 -5 6995 5551 4 850 574 81 11 65 chr6 34793976 34794068 -114722969 + Lx2B LINE L1 5493 5579 -307 4 850 620 102 10 0 chr6 34794288 34794386 -114722651 + (TC)n Simple_repeat Simple_repeat 2 100 0 4 850 568 177 5 0 chr6 34794783 34794893 -114722144 + L1_Mur2 LINE L1 5116 5229 -654 4 850 593 210 74 0 chr6 34795333 34795509 -114721528 - RCHARR1 DNA MER1_type 0 974 786 4 850 802 271 58 0 chr6 34795516 34795723 -114721314 + B4 SINE B4 7 225 -67 4 850 204 217 0 0 chr6 34795726 34795772 -114721265 + GA-rich Low_complexity Low_complexity 4 49 0 4 850 893 232 110 4 chr6 34795895 34796159 -114720878 - RCHARR1 DNA MER1_type -506 468 177 4 850 293 293 146 40 chr6 34796278 34796580 -114720457 + L2 LINE L2 2519 2852 -567 4 850 378 219 41 0 chr6 34797014 34797087 -114719950 - ID4 SINE ID -6 77 2 4 850 1179 61 0 20 chr6 34797454 34797604 -114719433 - B1_Mus1 SINE Alu 0 148 2 4 850 1227 48 0 0 chr6 34797664 34797811 -114719226 + B1_Mus2 SINE Alu 1 147 0 4 850 217 0 61 0 chr6 34797817 34797850 -114719187 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 850 1468 72 5 5 chr6 34797945 34798140 -114718897 - B2_Mm2 SINE B2 0 195 1 4 850 291 291 81 7 chr6 34798427 34798576 -114718461 + L1M5 LINE L1 5280 5439 -685 4 850 256 262 109 41 chr6 34798984 34799131 -114717906 + L1M5 LINE L1 5619 5775 -349 4 850 295 274 26 26 chr6 34799466 34799582 -114717455 + A-rich Low_complexity Low_complexity 4 119 0 4 850 699 260 259 27 chr6 34799761 34800472 -114716565 + L1MD1 LINE L1 1495 2370 -4263 4 850 312 305 19 0 chr6 34800473 34800578 -114716459 + ID_B1 SINE B4 70 176 -48 4 850 420 236 38 0 chr6 34800491 34800597 -114716440 + PB1D10 SINE Alu 7 116 -1 4 850 215 329 14 0 chr6 34800628 34800701 -114716336 + RSINE1 SINE B4 45 118 -47 4 850 300 27 0 0 chr6 34800710 34800747 -114716290 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 850 339 232 190 17 chr6 34800774 34801011 -114716026 + L1MD1 LINE L1 3467 3744 -2793 4 850 541 263 65 96 chr6 34801038 34801299 -114715738 + B4 SINE B4 40 292 0 4 850 658 268 144 32 chr6 34801598 34801685 -114715352 + L1MD1 LINE L1 3870 3957 -2580 4 850 1049 134 188 0 chr6 34801685 34801871 -114715166 - URR1A DNA MER1_type -1 225 5 4 850 658 268 144 32 chr6 34801871 34802254 -114714783 + L1MD1 LINE L1 3958 4393 -2144 4 850 771 282 148 9 chr6 34802676 34803209 -114713828 + L1MD1 LINE L1 4614 5220 -1317 4 850 575 230 169 9 chr6 34803224 34803443 -114713594 + L1MD1 LINE L1 5332 5585 -952 4 850 562 286 14 0 chr6 34803443 34803590 -114713447 + B1F SINE Alu 1 149 0 4 850 37 53 0 13 chr6 34803602 34803644 -114713393 + AT_rich Low_complexity Low_complexity 1 42 0 4 850 1105 172 30 0 chr6 34803644 34803842 -114713195 + B3 SINE B2 1 204 -12 4 850 37 53 0 13 chr6 34803842 34803875 -114713162 + AT_rich Low_complexity Low_complexity 1 33 0 4 850 488 233 179 7 chr6 34803923 34803986 -114713051 + B4 SINE B4 3 91 -201 4 850 707 79 9 11 chr6 34803986 34804106 -114712931 + B1_Mus1 SINE Alu 2 125 -24 4 850 237 372 13 0 chr6 34804086 34804164 -114712873 + B4A SINE B4 102 180 -112 4 850 1498 128 0 50 chr6 34804219 34804457 -114712580 - URR1A DNA MER1_type 0 226 1 4 850 296 327 0 93 chr6 34804488 34804606 -114712431 + B4A SINE B4 182 288 -4 4 850 2100 95 3 59 chr6 34804626 34804963 -114712074 + ORR1A3 LTR MaLR 1 318 -8 4 850 1364 260 86 71 chr6 34805018 34805060 -114711977 + L1MD1 LINE L1 5663 5704 -929 4 850 839 225 16 33 chr6 34805060 34805244 -114711793 + B3A SINE B2 2 182 -16 5 850 1364 260 86 71 chr6 34805244 34805534 -114711503 + L1MD1 LINE L1 5705 5990 -643 4 850 337 264 52 52 chr6 34805534 34805650 -114711387 + PB1D10 SINE Alu 2 117 0 5 850 1364 260 86 71 chr6 34805650 34805856 -114711181 + L1MD1 LINE L1 5991 6196 -437 4 850 969 110 0 0 chr6 34805856 34806001 -114711036 + (GA)n Simple_repeat Simple_repeat 1 145 0 5 850 453 36 0 0 chr6 34806001 34806055 -114710982 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 5 850 1364 260 86 71 chr6 34806055 34806249 -114710788 + L1MD1 LINE L1 6197 6407 -226 4 850 2113 113 12 95 chr6 34806966 34807378 -114709659 + RLTR1B LTR ERV1 135 512 0 5 850 253 306 38 90 chr6 34808773 34808906 -114708131 + B1F SINE Alu 23 148 -1 5 850 2972 221 38 36 chr6 34809343 34810056 -114706981 - RMER1C Other Other -3 1339 626 5 850 664 222 22 0 chr6 34810138 34810273 -114706764 - RSINE1 SINE B4 -16 149 12 5 850 417 187 0 0 chr6 34810610 34810685 -114706352 - L1_Rod LINE L1 -1969 3878 3804 5 850 761 246 52 52 chr6 34810684 34810989 -114706048 - L1_Rod LINE L1 -2695 3152 2848 5 850 359 283 70 26 chr6 34811331 34811487 -114705550 + RSINE1 SINE B4 1 163 -2 5 850 447 331 92 63 chr6 34811545 34811971 -114705066 + L1M4b LINE L1 344 781 -6553 5 850 329 325 27 66 chr6 34812211 34812468 -114704569 + HAL1 LINE L1 1563 1809 -698 5 850 463 78 13 13 chr6 34813815 34813893 -114703144 + (TTTTC)n Simple_repeat Simple_repeat 5 82 0 5 850 234 0 0 0 chr6 34815066 34815092 -114701945 + (T)n Simple_repeat Simple_repeat 1 26 0 5 850 226 336 16 32 chr6 34815612 34815738 -114701299 + Charlie22a DNA MER1_type 135 258 -233 5 850 198 0 0 0 chr6 34816599 34816621 -114700416 + (CATA)n Simple_repeat Simple_repeat 1 22 0 5 850 230 206 15 0 chr6 34816632 34816700 -114700337 + GA-rich Low_complexity Low_complexity 4 72 0 5 850 941 253 46 34 chr6 34816714 34816976 -114700061 + B4 SINE B4 6 270 -22 5 850 198 128 0 0 chr6 34818157 34818196 -114698841 + (G)n Simple_repeat Simple_repeat 1 39 0 5 850 260 225 60 36 chr6 34819123 34819206 -114697831 + RSINE1 SINE B4 71 155 -10 5 850 396 237 24 81 chr6 34820350 34820474 -114696563 + PB1D10 SINE Alu 1 117 0 5 850 828 153 20 14 chr6 34825852 34825998 -114691039 + B1F2 SINE Alu 2 148 -1 5 850 801 246 76 49 chr6 34827135 34827503 -114689534 + RMER17C LTR ERVK 1 378 -32 5 850 409 254 0 50 chr6 34829713 34829833 -114687204 + RSINE1 SINE B4 11 124 -41 5 850 273 119 0 0 chr6 34831469 34831511 -114685526 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 850 2043 98 125 232 chr6 34832782 34833129 -114683908 + MT2C_Mm LTR ERVL 1 209 -375 5 850 369 0 0 0 chr6 34833129 34833170 -114683867 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 5 850 2265 76 14 5 chr6 34833170 34833476 -114683561 + MT2C_Mm LTR ERVL 169 584 0 5 850 262 273 0 0 chr6 34833476 34833529 -114683508 + RSINE1 SINE B4 22 74 -91 5 850 585 303 5 64 chr6 34833522 34833709 -114683328 + B3A SINE B2 17 192 -6 5 850 377 348 8 0 chr6 34835113 34835231 -114681806 + PB1 SINE Alu 5 123 -4 5 850 418 271 31 10 chr6 34835260 34835357 -114681680 + PB1D7 SINE Alu 1 99 -21 5 850 453 36 0 0 chr6 34835363 34835418 -114681619 + (CAGG)n Simple_repeat Simple_repeat 1 55 0 5 850 492 111 0 0 chr6 34835418 34835499 -114681538 + (CATA)n Simple_repeat Simple_repeat 2 82 0 5 850 244 289 36 12 chr6 34835924 34836008 -114681029 - MIR SINE MIR -69 193 108 5 850 191 220 47 78 chr6 34837896 34837960 -114679077 - L3 LINE CR1 -3618 871 810 5 850 297 254 0 14 chr6 34838356 34838428 -114678609 - ID_B1 SINE B4 -63 161 91 5 850 738 137 48 0 chr6 34839509 34839633 -114677404 + B3 SINE B2 6 135 -81 5 850 242 127 32 0 chr6 34839683 34839741 -114677296 + T-rich Low_complexity Low_complexity 7 66 0 5 850 1199 48 0 14 chr6 34839741 34839888 -114677149 - B1_Mus2 SINE Alu -2 145 1 5 850 848 118 52 7 chr6 34839898 34840034 -114677003 - B1_Mur4 SINE Alu -8 142 1 5 850 261 214 162 43 chr6 34840331 34840448 -114676589 + MLT1A1 LTR MaLR 236 392 -16 5 850 376 282 42 102 chr6 34841697 34841863 -114675174 + RSINE1 SINE B4 2 157 -8 5 850 2043 187 69 32 chr6 34842782 34843076 -114673961 - MTC LTR MaLR 0 421 105 5 850 953 163 189 0 chr6 34843076 34843266 -114673771 + URR1A DNA MER1_type 1 226 0 5 850 2043 187 69 32 chr6 34843266 34843375 -114673662 - MTC LTR MaLR -317 104 3 5 850 5777 158 69 72 chr6 34843377 34843624 -114673413 - MTC-int LTR MaLR 0 1258 1045 5 850 1227 55 0 0 chr6 34843624 34843770 -114673267 + B1_Mus2 SINE Alu 2 147 0 5 850 5777 158 69 72 chr6 34843770 34844776 -114672261 - MTC-int LTR MaLR -214 1044 8 5 850 1964 118 19 5 chr6 34844783 34845111 -114671926 - MTC LTR MaLR -8 413 1 5 850 506 113 229 28 chr6 34846882 34846991 -114670046 + B1_Mus2 SINE Alu 1 131 -16 5 850 311 306 0 0 chr6 34847360 34847432 -114669605 + RSINE1 SINE B4 84 155 -10 5 850 302 324 7 48 chr6 34847511 34847657 -114669380 + L1MC LINE L1 5423 5562 -2320 5 850 271 296 0 0 chr6 34848255 34848326 -114668711 + BC1_Mm scRNA scRNA 27 97 -55 5 850 287 264 115 0 chr6 34848379 34848466 -114668571 + L3 LINE CR1 2131 2227 -2262 5 850 1501 32 27 11 chr6 34848768 34848927 -114668110 + B2_Mm1a SINE B2 2 160 -33 5 850 186 43 0 0 chr6 34848927 34848950 -114668087 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 850 1501 32 27 11 chr6 34848950 34848978 -114668059 + B2_Mm1a SINE B2 161 192 -1 5 850 239 329 52 13 chr6 34849034 34849111 -114667926 + B4 SINE B4 62 141 -151 5 850 2270 119 22 0 chr6 34849586 34849906 -114667131 + ORR1A2 LTR MaLR 1 327 0 5 850 579 291 11 97 chr6 34849994 34850169 -114666868 + RSINE1 SINE B4 6 165 0 5 850 240 254 27 159 chr6 34850169 34850214 -114666823 + B2_Mm2 SINE B2 5 195 0 5 850 920 212 59 0 chr6 34850633 34850836 -114666201 + B3 SINE B2 2 216 0 5 850 182 247 56 90 chr6 34850838 34850927 -114666110 - L3 LINE CR1 -80 4409 4324 5 850 481 186 17 48 chr6 34851509 34851624 -114665413 + B1F SINE Alu 1 111 -37 5 850 321 294 50 106 chr6 34852384 34852544 -114664493 + RSINE1 SINE B4 8 158 -7 5 850 183 42 0 0 chr6 34853366 34853390 -114663647 + (A)n Simple_repeat Simple_repeat 1 24 0 5 850 756 181 28 28 chr6 34853390 34853532 -114663505 - RLTR16 LTR ERVK -360 145 4 5 850 478 302 103 34 chr6 34854914 34855205 -114661832 + MER33 DNA MER1_type 1 311 -13 5 850 670 212 198 12 chr6 34856227 34856394 -114660643 + B3A SINE B2 1 198 0 5 850 239 244 67 44 chr6 34857009 34857099 -114659938 - MLT1H2 LTR MaLR -137 352 261 5 850 213 222 0 0 chr6 34858470 34858533 -114658504 + T-rich Low_complexity Low_complexity 1 63 0 5 850 1211 68 0 0 chr6 34858535 34858682 -114658355 - B1_Mus1 SINE Alu 0 148 2 5 850 917 236 27 18 chr6 34858719 34858939 -114658098 + ID_B1 SINE B4 1 222 -2 5 850 836 161 0 53 chr6 34859030 34859181 -114657856 - B1_Mus1 SINE Alu 0 148 6 5 850 310 287 37 128 chr6 34859037 34859201 -114657836 - B4A SINE B4 -68 224 76 5 850 22 0 0 0 chr6 34859201 34859223 -114657814 + AT_rich Low_complexity Low_complexity 1 22 0 5 850 297 278 72 39 chr6 34860433 34860613 -114656424 + MIR3 SINE MIR 4 189 -19 5 850 201 217 0 48 chr6 34860943 34861006 -114656031 + (CCCCG)n Simple_repeat Simple_repeat 4 63 0 5 850 1059 71 0 0 chr6 34861286 34861427 -114655610 + (TTTTC)n Simple_repeat Simple_repeat 2 142 0 5 850 268 156 0 0 chr6 34861430 34861475 -114655562 - ID4_ SINE ID -26 57 13 5 850 265 329 12 0 chr6 34861843 34861925 -114655112 + MIRb SINE MIR 124 206 -62 5 850 257 239 116 29 chr6 34861925 34861994 -114655043 + MT2B LTR ERVL 163 237 -364 5 850 319 146 0 0 chr6 34861947 34861995 -114655042 + PB1D9 SINE Alu 36 83 -37 5 850 240 32 0 0 chr6 34862004 34862020 -114655017 + (A)n Simple_repeat Simple_repeat 1 16 0 5 850 1241 54 0 0 chr6 34862020 34862167 -114654870 + B1_Mus2 SINE Alu 1 147 0 5 850 240 32 0 0 chr6 34862167 34862181 -114654856 + (A)n Simple_repeat Simple_repeat 1 14 0 5 850 324 70 0 0 chr6 34862213 34862256 -114654781 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 850 781 274 52 38 chr6 34862256 34862544 -114654493 - B4A SINE B4 0 292 1 5 850 261 157 68 4 chr6 34862554 34862812 -114654225 + (TA)n Simple_repeat Simple_repeat 1 274 0 5 850 323 271 91 27 chr6 34862926 34863036 -114654001 - MLT1A0 LTR MaLR 0 365 249 5 850 219 203 0 0 chr6 34863074 34863138 -114653899 + C-rich Low_complexity Low_complexity 1 64 0 5 850 21 0 0 0 chr6 34863172 34863193 -114653844 + AT_rich Low_complexity Low_complexity 1 21 0 5 850 1096 52 0 29 chr6 34863647 34863787 -114653250 + B1_Mus1 SINE Alu 1 136 -12 5 850 211 182 91 0 chr6 34863878 34863922 -114653115 + L2a LINE L2 3133 3180 -246 5 850 1138 75 7 7 chr6 34863928 34864075 -114652962 + B1_Mus2 SINE Alu 1 147 0 5 850 380 369 0 44 chr6 34864102 34864238 -114652799 + L2a LINE L2 3286 3415 -11 5 850 310 275 99 8 chr6 34864407 34864528 -114652509 + L2 LINE L2 2315 2446 -973 5 850 343 301 31 113 chr6 34864569 34864669 -114652368 + L1MD1 LINE L1 5590 5692 -550 5 850 1096 211 29 5 chr6 34864669 34864879 -114652158 + B3 SINE B2 2 216 0 5 850 343 301 31 113 chr6 34864879 34864973 -114652064 + L1MD1 LINE L1 5693 5768 -474 5 851 238 343 35 14 chr6 34865208 34865353 -114651684 + L1MD1 LINE L1 6087 6234 -8 5 851 996 211 46 17 chr6 34865402 34865640 -114651397 - B4A SINE B4 -14 278 1 5 851 1209 74 0 0 chr6 34865691 34865839 -114651198 - B1_Mus1 SINE Alu 0 148 1 5 851 1377 76 16 52 chr6 34866020 34866173 -114650864 - B2_Mm2 SINE B2 -7 188 41 5 851 1455 67 17 0 chr6 34866173 34866351 -114650686 + B2_Mm2 SINE B2 1 181 -14 5 851 186 43 0 0 chr6 34866351 34866374 -114650663 + (GAAAA)n Simple_repeat Simple_repeat 4 26 0 5 851 1377 76 16 52 chr6 34866374 34866413 -114650624 - B2_Mm2 SINE B2 -155 40 3 5 851 714 252 0 0 chr6 34866475 34866618 -114650419 - B1F2 SINE Alu -6 143 1 5 851 492 18 0 0 chr6 34867485 34867542 -114649495 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 851 363 198 74 0 chr6 34867554 34867635 -114649402 + B1F1 SINE Alu 2 88 -61 6 851 465 19 0 0 chr6 34867635 34867689 -114649348 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 851 224 280 206 0 chr6 34867689 34867704 -114649333 + B4 SINE B4 190 204 -88 6 851 249 189 0 36 chr6 34867707 34867762 -114649275 + GA-rich Low_complexity Low_complexity 3 55 0 6 851 191 136 0 43 chr6 34867978 34868024 -114649013 + CT-rich Low_complexity Low_complexity 1 44 0 6 851 936 285 0 115 chr6 34868039 34868344 -114648693 + MLT2B3 LTR ERVL 246 515 -39 6 851 752 174 242 0 chr6 34868435 34868596 -114648441 + B3 SINE B2 8 207 -9 6 851 461 205 177 16 chr6 34868844 34868968 -114648069 - B3A SINE B2 -53 145 2 6 851 522 0 0 0 chr6 34869202 34869260 -114647777 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 851 312 27 0 0 chr6 34871149 34871186 -114645851 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 851 410 0 20 0 chr6 34872945 34872995 -114644042 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 851 384 22 0 0 chr6 34872995 34873039 -114643998 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 851 856 169 7 0 chr6 34873491 34873633 -114643404 + B1_Mur4 SINE Alu 2 144 -6 6 851 233 318 0 120 chr6 34873817 34873917 -114643120 + MT2B2 LTR ERVL 154 241 -343 6 851 469 262 19 9 chr6 34873838 34873946 -114643091 + B1F1 SINE Alu 6 114 -35 6 851 295 265 0 0 chr6 34874315 34874413 -114642624 + T-rich Low_complexity Low_complexity 1 98 0 6 851 205 153 14 14 chr6 34874427 34874500 -114642537 + T-rich Low_complexity Low_complexity 1 73 0 6 851 365 280 14 77 chr6 34874501 34874532 -114642505 - B1F SINE Alu -2 147 118 6 851 481 259 146 50 chr6 34874532 34874731 -114642306 - ID_B1 SINE B4 -5 219 2 6 851 487 262 1 8 chr6 34874731 34874842 -114642195 - PB1D7 SINE Alu -32 117 14 6 851 316 340 73 9 chr6 34874871 34874981 -114642056 + PB1D10 SINE Alu 1 117 0 6 851 291 54 0 0 chr6 34874998 34875035 -114642002 + (CAA)n Simple_repeat Simple_repeat 3 39 0 6 851 322 227 71 7 chr6 34875789 34875893 -114641144 + PB1D10 SINE Alu 14 118 -31 6 851 810 209 31 12 chr6 34876189 34876349 -114640688 - B3A SINE B2 -35 163 1 6 851 180 0 0 0 chr6 34876356 34876376 -114640661 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 851 380 317 0 0 chr6 34876406 34876510 -114640527 + PB1D10 SINE Alu 14 117 0 6 851 377 291 36 36 chr6 34876720 34876859 -114640178 + RSINE1 SINE B4 17 155 -10 6 851 344 276 115 0 chr6 34876903 34876990 -114640047 + B1_Mur2 SINE Alu 13 109 -40 6 851 450 0 0 0 chr6 34878154 34878204 -114638833 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 851 422 194 96 10 chr6 34878336 34878440 -114638597 - B1F2 SINE Alu -9 140 28 6 851 425 257 185 49 chr6 34878442 34878626 -114638411 - RLTR24 LTR ERV1 0 529 321 6 851 241 280 93 62 chr6 34879665 34879721 -114637316 + YREP_Mm Unknown Unknown 113 282 -1530 6 851 537 203 54 54 chr6 34879721 34879851 -114637186 - ID_B1 SINE B4 0 224 95 6 851 255 87 94 19 chr6 34881314 34881420 -114635617 + (TA)n Simple_repeat Simple_repeat 1 114 0 6 851 529 301 84 92 chr6 34881508 34881866 -114635171 - ORR1E LTR MaLR -2 357 3 6 851 874 191 135 16 chr6 34882325 34882517 -114634520 - B3 SINE B2 0 216 2 6 851 55 48 0 0 chr6 34882563 34882646 -114634391 + AT_rich Low_complexity Low_complexity 1 83 0 6 851 257 277 82 37 chr6 34882772 34882907 -114634130 - L1MD LINE L1 -2237 3909 3769 6 851 726 188 0 0 chr6 34883070 34883230 -114633807 + GA-rich Low_complexity Low_complexity 1 160 0 6 851 699 24 0 0 chr6 34884842 34884927 -114632110 + (CATA)n Simple_repeat Simple_repeat 2 86 0 6 851 737 293 19 0 chr6 34884929 34885086 -114631951 - B3A SINE B2 -38 160 1 6 851 240 340 7 7 chr6 34885678 34885823 -114631214 + (TG)n Simple_repeat Simple_repeat 1 145 0 6 851 456 324 0 0 chr6 34885871 34886210 -114630827 + (CA)n Simple_repeat Simple_repeat 1 339 0 6 851 363 248 118 9 chr6 34886384 34886494 -114630543 - MLT1A0 LTR MaLR -47 318 197 6 851 818 158 94 50 chr6 34886801 34886981 -114630056 - B2_Mm2 SINE B2 -7 188 1 6 851 403 162 38 0 chr6 34889820 34889900 -114627137 + MLT2D LTR ERVL 11 93 -321 6 851 1397 77 17 0 chr6 34889963 34890144 -114626893 - B2_Mm2 SINE B2 -11 184 1 6 851 372 211 167 37 chr6 34890153 34890261 -114626776 + MLT2D LTR ERVL 108 229 -185 6 851 1286 278 16 85 chr6 34890916 34891311 -114625726 + RCHARR1 DNA MER1_type 112 485 -489 6 851 811 153 27 20 chr6 34891311 34891458 -114625579 + B1_Mur2 SINE Alu 2 149 0 6 851 1286 278 16 85 chr6 34891458 34891510 -114625527 + RCHARR1 DNA MER1_type 486 528 -446 6 851 1408 165 77 1 chr6 34891508 34891768 -114625269 - RLTR12A LTR ERVK -272 256 2 6 851 634 23 23 11 chr6 34892874 34892962 -114624075 + (GGGA)n Simple_repeat Simple_repeat 3 91 0 6 851 212 77 26 0 chr6 34893056 34893095 -114623942 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 851 307 204 47 123 chr6 34893109 34893215 -114623822 + RMER30 DNA MER1_type 97 194 -8 6 851 216 158 0 0 chr6 34893352 34893390 -114623647 + (TATG)n Simple_repeat Simple_repeat 1 38 0 6 851 304 265 56 37 chr6 34893397 34893558 -114623479 - RSINE1 SINE B4 0 165 2 6 851 698 191 84 0 chr6 34893676 34893807 -114623230 - B1_Mur1 SINE Alu -7 142 1 6 851 252 325 13 0 chr6 34895199 34895276 -114621761 - ID2 SINE ID 0 83 6 6 851 219 36 0 0 chr6 34895276 34895304 -114621733 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 851 1222 172 44 0 chr6 34895313 34895517 -114621520 - B3 SINE B2 0 216 4 6 851 249 200 57 70 chr6 34895538 34895634 -114621403 - PB1 SINE Alu 0 149 46 6 851 312 287 10 96 chr6 34896850 34896954 -114620083 + L2c LINE L2 3261 3355 -32 6 851 846 98 0 0 chr6 34896975 34897097 -114619940 + (TGGA)n Simple_repeat Simple_repeat 1 122 0 6 851 2452 92 6 3 chr6 34897147 34897473 -114619564 + ORR1A2 LTR MaLR 1 327 0 6 851 294 283 146 23 chr6 34897532 34897662 -114619375 + MLT1B LTR MaLR 8 153 -237 6 851 502 285 6 14 chr6 34897666 34897809 -114619228 - ID_B1 SINE B4 -2 222 85 6 851 283 322 116 33 chr6 34897856 34898071 -114618966 + MLT1B LTR MaLR 154 386 -4 6 851 256 198 24 36 chr6 34898655 34898739 -114618298 + CT-rich Low_complexity Low_complexity 4 86 0 6 851 210 340 19 37 chr6 34899106 34899213 -114617824 - MIR3 SINE MIR -17 191 87 6 851 401 208 253 64 chr6 34899699 34899875 -114617162 + ORR1E LTR MaLR 1 189 -170 6 851 224 136 0 33 chr6 34899876 34899937 -114617100 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 6 851 441 260 95 56 chr6 34899952 34900172 -114616865 + ORR1E LTR MaLR 158 403 -16 6 851 343 308 40 27 chr6 34900172 34900322 -114616715 + L1MB5 LINE L1 5856 6007 -167 6 851 320 357 97 18 chr6 34900409 34900523 -114616514 + PB1D10 SINE Alu 1 123 -4 6 851 821 132 0 0 chr6 34900934 34901055 -114615982 - B1_Mus1 SINE Alu -10 138 18 6 851 202 286 0 0 chr6 34901203 34901252 -114615785 + CT-rich Low_complexity Low_complexity 1 49 0 6 851 310 256 12 0 chr6 34901786 34901950 -114615087 + (CA)n Simple_repeat Simple_repeat 1 166 0 6 851 623 211 0 6 chr6 34901966 34902138 -114614899 + (CA)n Simple_repeat Simple_repeat 1 171 0 6 851 612 192 32 48 chr6 34903176 34903302 -114613735 - URR1A DNA MER1_type -55 171 48 6 851 267 305 124 44 chr6 34903581 34903718 -114613319 + MLT1D LTR MaLR 355 502 -3 6 851 487 291 20 34 chr6 34904551 34904697 -114612340 + B1F SINE Alu 6 149 0 6 851 340 291 45 51 chr6 34907175 34907331 -114609706 - MER58B DNA MER1_type -158 183 29 6 851 372 305 162 32 chr6 34907565 34907902 -114609135 - L1MEd LINE L1 -4872 1353 945 6 851 456 19 0 0 chr6 34908412 34908465 -114608572 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 851 1584 56 0 5 chr6 34908555 34908751 -114608286 + B2_Mm2 SINE B2 1 195 0 6 851 285 296 16 136 chr6 34908821 34908896 -114608141 - Cheshire DNA MER1_type -2310 110 45 6 851 1085 220 9 9 chr6 34908896 34909112 -114607925 + B3 SINE B2 1 216 0 6 851 285 296 16 136 chr6 34909112 34909161 -114607876 - Cheshire DNA MER1_type -2376 44 1 6 851 256 271 34 0 chr6 34910470 34910529 -114606508 - B4 SINE B4 -149 143 83 6 851 192 77 0 0 chr6 34910558 34910584 -114606453 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 851 790 302 65 13 chr6 34911065 34911374 -114605663 + MER44A DNA MER2_type 12 336 -3 6 851 622 253 59 13 chr6 34911827 34911979 -114605058 - RSINE1 SINE B4 -4 161 3 6 851 346 200 45 45 chr6 34912020 34912109 -114604928 + B3A SINE B2 30 118 -80 6 851 262 235 250 40 chr6 34912629 34912753 -114604284 + RLTR21 LTR ERVK 1080 1229 -343 6 851 286 159 123 55 chr6 34912715 34912779 -114604258 + B3 SINE B2 137 209 -7 6 851 1217 43 0 0 chr6 34912779 34912918 -114604119 + B1_Mus1 SINE Alu 1 139 -9 6 851 411 21 0 0 chr6 34912918 34912966 -114604071 + (CTAAA)n Simple_repeat Simple_repeat 3 50 0 6 851 332 308 9 18 chr6 34913334 34913443 -114603594 - ID_B1 SINE B4 -22 202 95 6 851 301 212 0 15 chr6 34913446 34913513 -114603524 - ID4_ SINE ID -17 66 1 6 851 387 314 98 37 chr6 34913718 34913933 -114603104 + RMER5 LTR ERV1 279 506 -28 6 851 229 254 36 0 chr6 34913949 34914004 -114603033 + MLT1B LTR MaLR 334 390 0 6 851 3045 126 31 27 chr6 34914058 34914580 -114602457 + RLTR28 LTR ERVL 1 524 0 6 851 3489 23 2 5 chr6 34914993 34915390 -114601647 + MTA_Mm LTR MaLR 1 396 0 6 851 225 319 67 76 chr6 34915704 34915809 -114601228 - MER5A DNA MER1_type -72 117 14 6 851 514 263 9 0 chr6 34915983 34916097 -114600940 + RSINE1 SINE B4 2 116 -49 6 851 406 342 67 25 chr6 34916568 34916808 -114600229 + L1MC LINE L1 4457 4706 -1440 6 851 615 319 42 26 chr6 34916939 34917203 -114599834 + B4A SINE B4 3 270 -22 6 851 398 143 11 0 chr6 34917229 34917320 -114599717 + (CA)n Simple_repeat Simple_repeat 2 93 0 7 851 225 241 103 0 chr6 34917320 34917378 -114599659 + RMER15 LTR ERVL 3 66 -509 7 851 2310 176 100 25 chr6 34917420 34917899 -114599138 + RMER15 LTR ERVL 37 551 -24 7 851 349 299 16 33 chr6 34917982 34918103 -114598934 + RSINE1 SINE B4 25 143 -22 7 851 396 0 0 0 chr6 34918231 34918275 -114598762 + (CAA)n Simple_repeat Simple_repeat 2 45 0 7 851 1379 75 27 0 chr6 34918439 34918625 -114598412 + B2_Mm1a SINE B2 2 192 -1 7 851 1226 56 0 0 chr6 34918748 34918890 -114598147 - B1_Mm SINE Alu -5 142 1 7 851 238 218 91 11 chr6 34918895 34918983 -114598054 + L1M4c LINE L1 280 374 -2369 7 851 276 329 45 48 chr6 34919159 34919450 -114597587 + L1M4c LINE L1 670 959 -1784 7 851 253 342 81 0 chr6 34919531 34919642 -114597395 + L1M4c LINE L1 985 1104 -1639 7 851 987 115 122 0 chr6 34919651 34919807 -114597230 + B2_Mm1t SINE B2 2 176 -17 7 851 364 124 0 22 chr6 34919818 34919884 -114597153 + B2_Mm2 SINE B2 47 109 -107 7 851 180 0 0 0 chr6 34919902 34919922 -114597115 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 851 30 27 0 0 chr6 34919954 34919991 -114597046 + AT_rich Low_complexity Low_complexity 1 37 0 7 851 1352 46 11 0 chr6 34920051 34920226 -114596811 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 7 851 1203 107 0 0 chr6 34920242 34920420 -114596617 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 7 851 683 295 82 38 chr6 34920425 34920767 -114596270 + L1M4c LINE L1 1177 1487 -1256 7 851 749 171 57 0 chr6 34920868 34921008 -114596029 + B1_Mus1 SINE Alu 1 148 0 7 851 872 75 2 11 chr6 34921557 34921689 -114595348 + MTB LTR MaLR 284 419 -2 7 851 181 339 87 26 chr6 34922138 34922253 -114594784 - MIRc SINE MIR -114 154 33 7 851 1195 262 84 16 chr6 34922279 34922706 -114594331 + Lx8 LINE L1 6777 7232 -241 7 851 315 292 40 30 chr6 34922707 34922806 -114594231 + RMER15 LTR ERVL 371 470 -105 7 851 264 323 29 82 chr6 34923112 34923355 -114593682 + Lx8 LINE L1 7242 7471 -2 7 851 915 345 65 56 chr6 34923369 34923927 -114593110 + Arthur1 DNA Tip100 88 650 -3297 7 851 675 254 22 0 chr6 34923987 34924125 -114592912 - B1F1 SINE Alu -8 141 1 7 851 287 293 38 81 chr6 34924367 34924527 -114592510 + Arthur1 DNA Tip100 3656 3808 -139 7 851 532 267 31 99 chr6 34924832 34924994 -114592043 + B4 SINE B4 73 223 -69 7 851 984 124 0 40 chr6 34924849 34925000 -114592037 + B1_Mur3 SINE Alu 5 149 0 7 851 26 0 0 0 chr6 34925000 34925026 -114592011 + AT_rich Low_complexity Low_complexity 1 26 0 7 851 340 240 59 44 chr6 34925027 34925162 -114591875 + Arthur1 DNA Tip100 3794 3930 -17 7 851 240 35 0 0 chr6 34925162 34925191 -114591846 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 851 539 370 66 29 chr6 34925415 34925763 -114591274 - Lx8 LINE L1 -147 7326 6966 7 851 773 320 79 29 chr6 34925786 34926066 -114590971 + MLT2B1 LTR ERVL 9 302 -218 7 851 1179 55 0 33 chr6 34926217 34926368 -114590669 - B1_Mus1 SINE Alu -1 147 2 7 851 237 244 0 0 chr6 34926379 34926420 -114590617 + MER115 DNA Tip100 653 693 0 7 851 950 266 71 42 chr6 34926436 34926719 -114590318 + B4 SINE B4 1 291 -1 7 851 392 279 7 99 chr6 34929355 34929506 -114587531 + Lx9 LINE L1 6503 6639 -1005 7 851 1107 244 134 6 chr6 34929506 34929856 -114587181 + Lx9 LINE L1 6755 7149 -495 7 851 214 271 17 17 chr6 34930135 34930195 -114586842 + MIRb SINE MIR 201 260 -8 7 851 235 274 0 0 chr6 34930741 34930792 -114586245 - MER44D DNA MER2_type -618 87 37 7 851 552 218 98 35 chr6 34931037 34931265 -114585772 + RMER20B LTR ERVK 119 356 -271 7 851 229 259 35 0 chr6 34931382 34931440 -114585597 - ORSL DNA Tip100 -203 72 13 7 851 381 217 0 35 chr6 34931622 34931708 -114585329 + Tigger7 DNA MER2_type 37 119 -2372 7 851 351 0 0 0 chr6 34931729 34931768 -114585269 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 851 465 286 87 8 chr6 34931768 34931895 -114585142 - B3A SINE B2 -57 141 5 7 851 473 312 74 5 chr6 34931890 34932093 -114584944 + Tigger7 DNA MER2_type 87 303 -2188 7 851 301 193 0 0 chr6 34932129 34932186 -114584851 + MER20 DNA MER1_type 163 219 0 7 851 266 276 89 59 chr6 34932194 34932329 -114584708 - Tigger7 DNA MER2_type 0 2491 2353 7 851 223 203 0 26 chr6 34932342 34932418 -114584619 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 851 304 238 81 35 chr6 34932437 34932524 -114584513 - Tigger7 DNA MER2_type -1439 1052 962 7 851 221 256 30 46 chr6 34933255 34933386 -114583651 + (TATATG)n Simple_repeat Simple_repeat 1 129 0 7 851 1041 127 0 0 chr6 34934346 34934512 -114582525 + (TGGA)n Simple_repeat Simple_repeat 3 168 0 7 851 462 346 10 10 chr6 34934817 34935021 -114582016 + RMER15-int LTR ERVL 2015 2218 -2781 7 851 958 57 8 0 chr6 34935242 34935366 -114581671 + B1_Mus2 SINE Alu 2 126 -21 7 851 2209 144 91 71 chr6 34935436 34935929 -114581108 + RLTR28 LTR ERVL 8 510 -14 7 851 649 259 24 6 chr6 34935945 34936112 -114580925 + RMER15-int LTR ERVL 4217 4386 -613 7 851 225 0 0 0 chr6 34936193 34936218 -114580819 + (A)n Simple_repeat Simple_repeat 1 25 0 7 851 722 279 129 41 chr6 34936230 34936548 -114580489 + RMER15-int LTR ERVL 4375 4720 -279 7 851 258 105 0 0 chr6 34936734 34936772 -114580265 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 851 480 255 82 115 chr6 34936861 34937105 -114579932 + RMER15-int LTR ERVL 4741 4976 -23 7 851 503 272 170 16 chr6 34937347 34937541 -114579496 + RMER15 LTR ERVL 339 562 -13 7 851 844 155 67 7 chr6 34938876 34939025 -114578012 + URR1B DNA MER1_type 1 158 -67 7 851 324 0 0 0 chr6 34939077 34939113 -114577924 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 851 765 324 10 14 chr6 34939599 34939890 -114577147 - B4A SINE B4 -1 291 2 7 851 640 167 0 22 chr6 34939967 34940151 -114576886 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 851 218 217 28 28 chr6 34940152 34940223 -114576814 + (CAGA)n Simple_repeat Simple_repeat 4 74 0 7 851 306 132 18 36 chr6 34940223 34940278 -114576759 + HAL1-3A_ME LINE L1 1975 2028 -830 7 851 784 204 0 0 chr6 34941186 34941328 -114575709 + B1_Mur1 SINE Alu 1 142 -7 7 851 225 147 0 0 chr6 34941342 34941376 -114575661 + B4A SINE B4 83 116 -176 7 851 180 0 0 0 chr6 34941556 34941576 -114575461 + (T)n Simple_repeat Simple_repeat 1 20 0 7 851 1257 249 104 113 chr6 34942347 34942886 -114574151 + RMER5 LTR ERV1 1 534 0 7 851 3566 73 6 2 chr6 34942993 34943462 -114573575 - L1_Mus3 LINE L1 0 6638 6168 7 851 825 265 52 0 chr6 34943474 34943685 -114573352 - ID_B1 SINE B4 -2 222 1 7 851 180 111 0 0 chr6 34944072 34944099 -114572938 + (GGA)n Simple_repeat Simple_repeat 2 28 0 7 851 414 0 0 0 chr6 34944212 34944258 -114572779 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 851 533 322 87 33 chr6 34945902 34946178 -114570859 + B4A SINE B4 2 292 0 7 851 310 304 8 42 chr6 34946324 34946444 -114570593 - L2a LINE L2 -32 3394 3279 7 851 2489 209 114 52 chr6 34946630 34946907 -114570130 + RCHARR1 DNA MER1_type 187 497 -477 7 851 556 247 11 85 chr6 34946907 34947084 -114569953 + RSINE1 SINE B4 2 165 0 7 851 2489 209 114 52 chr6 34947084 34947544 -114569493 + RCHARR1 DNA MER1_type 498 970 -4 7 851 367 265 20 0 chr6 34948286 34948388 -114568649 + B3A SINE B2 4 107 -91 7 851 1218 48 0 0 chr6 34948433 34948580 -114568457 - B1_Mus1 SINE Alu -1 147 1 7 851 25 0 0 0 chr6 34948581 34948606 -114568431 + AT_rich Low_complexity Low_complexity 1 25 0 7 851 309 310 0 0 chr6 34948649 34948720 -114568317 + ID_B1 SINE B4 34 104 -120 7 851 497 261 9 9 chr6 34948985 34949101 -114567936 + PB1D10 SINE Alu 2 117 0 7 851 442 221 115 100 chr6 34949346 34949607 -114567430 + RMER21B LTR ERV1 303 567 -275 7 851 430 50 157 16 chr6 34949981 34950102 -114566935 + (GTATG)n Simple_repeat Simple_repeat 1 138 0 7 851 452 347 64 64 chr6 34950425 34950782 -114566255 - MER115 DNA Tip100 -6 687 331 7 851 251 145 51 26 chr6 34951336 34951414 -114565623 + CT-rich Low_complexity Low_complexity 2 81 0 7 851 374 234 84 0 chr6 34951433 34951540 -114565497 - PB1D10 SINE Alu -1 116 1 7 851 268 127 206 0 chr6 34951691 34951754 -114565283 - MTD LTR MaLR -119 300 225 7 851 441 259 18 9 chr6 34951744 34951857 -114565180 + MTD LTR MaLR 86 199 -220 7 851 453 250 74 37 chr6 34951865 34952027 -114565010 + B3A SINE B2 3 170 -28 7 851 225 0 0 0 chr6 34952027 34952052 -114564985 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 851 1049 164 92 0 chr6 34952800 34952995 -114564042 - RMER1B Other Other -112 954 742 7 851 3012 134 55 20 chr6 34953198 34953707 -114563330 - RLTR11A2 LTR ERVK 0 527 1 7 851 1227 210 130 44 chr6 34953798 34954182 -114562855 + MTD LTR MaLR 1 417 -2 7 851 340 258 0 0 chr6 34954235 34954332 -114562705 + Charlie1a DNA MER1_type 1098 1194 -261 7 851 239 206 73 0 chr6 34954672 34954740 -114562297 - MTE2a LTR MaLR -18 361 289 7 851 803 211 16 27 chr6 34954809 34954994 -114562043 + ORR1D1 LTR MaLR 4 186 -188 7 851 342 192 16 70 chr6 34954994 34955179 -114561858 + CT-rich Low_complexity Low_complexity 1 175 0 7 851 458 162 191 0 chr6 34955193 34955298 -114561739 + ORR1D1 LTR MaLR 248 372 -2 7 851 275 232 75 66 chr6 34955301 34955407 -114561630 - MTE2a LTR MaLR -272 107 1 7 851 1093 109 0 0 chr6 34955610 34955757 -114561280 - B1_Mm SINE Alu 0 147 1 7 851 357 300 36 0 chr6 34955787 34955927 -114561110 - L1MA7 LINE L1 0 6291 6147 7 851 1508 224 109 81 chr6 34955969 34956426 -114560611 + Lx8 LINE L1 6700 7179 -294 7 851 3575 15 2 0 chr6 34956426 34956821 -114560216 + MTA_Mm LTR MaLR 1 396 0 7 851 9125 44 2 1 chr6 34956821 34957918 -114559119 + MTA_Mm-int LTR MaLR 1 1098 0 7 851 3535 20 2 0 chr6 34957918 34958313 -114558724 + MTA_Mm LTR MaLR 1 396 0 7 851 1508 224 109 81 chr6 34958313 34958412 -114558625 + Lx8 LINE L1 7180 7272 -201 7 851 647 188 6 0 chr6 34958449 34958625 -114558412 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 851 219 191 0 0 chr6 34958648 34958711 -114558326 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 851 1350 85 37 16 chr6 34959271 34959462 -114557575 - B2_Mm2 SINE B2 0 195 1 7 851 711 206 20 0 chr6 34959583 34959729 -114557308 - B1_Mur2 SINE Alu 0 149 1 7 851 351 0 0 0 chr6 34959952 34959991 -114557046 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 851 223 163 0 0 chr6 34960491 34960534 -114556503 + G-rich Low_complexity Low_complexity 1 43 0 7 851 281 260 53 12 chr6 34960534 34960681 -114556356 + B3A SINE B2 26 212 -4 7 851 318 26 0 0 chr6 34960705 34960744 -114556293 + (CCA)n Simple_repeat Simple_repeat 2 40 0 7 851 1011 208 29 0 chr6 34960776 34960983 -114556054 + B3 SINE B2 4 216 0 7 851 587 302 76 24 chr6 34961014 34961424 -114555613 + L1_Rod LINE L1 1573 2003 -3844 7 851 279 226 250 42 chr6 34961561 34961681 -114555356 + Lx8 LINE L1 7127 7271 -202 7 851 246 262 0 48 chr6 34961696 34961780 -114555257 + GA-rich Low_complexity Low_complexity 3 82 0 7 851 261 0 0 0 chr6 34961826 34961855 -114555182 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 8 851 282 29 0 0 chr6 34962127 34962162 -114554875 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 851 980 79 0 7 chr6 34963379 34963519 -114553518 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 8 851 27 0 0 0 chr6 34964858 34964885 -114552152 + AT_rich Low_complexity Low_complexity 1 27 0 8 851 585 239 86 47 chr6 34965723 34965956 -114551081 - MER2 DNA MER2_type -13 332 91 8 851 1193 68 0 0 chr6 34967593 34967740 -114549297 - B1_Mus2 SINE Alu 0 147 1 8 851 273 146 0 0 chr6 34968273 34968321 -114548716 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 851 360 320 122 19 chr6 34969395 34969666 -114547371 + HAL1 LINE L1 605 903 -1604 8 851 305 234 108 36 chr6 34970000 34970111 -114546926 + HAL1 LINE L1 1451 1569 -938 8 851 397 184 138 0 chr6 34971335 34971422 -114545615 - PB1D7 SINE Alu -3 117 19 8 851 226 0 0 56 chr6 34974081 34974117 -114542920 + (CGGGG)n Simple_repeat Simple_repeat 1 34 0 8 851 427 209 11 11 chr6 34975514 34975606 -114541431 - MIRc SINE MIR -15 253 162 8 851 21 36 0 0 chr6 34975781 34975809 -114541228 + AT_rich Low_complexity Low_complexity 1 28 0 8 851 256 328 0 43 chr6 34976051 34976121 -114540916 - ID4 SINE ID -5 78 12 8 851 439 234 329 0 chr6 34976161 34976319 -114540718 - ID_B1 SINE B4 -10 214 5 8 851 22 0 0 0 chr6 34978794 34978816 -114538221 + AT_rich Low_complexity Low_complexity 1 22 0 8 851 198 167 0 0 chr6 34979010 34979046 -114537991 + GA-rich Low_complexity Low_complexity 1 36 0 8 851 759 200 43 0 chr6 34979596 34979736 -114537301 - B1_Mur1 SINE Alu -2 147 2 8 851 364 264 124 0 chr6 34980363 34980492 -114536545 + B1F2 SINE Alu 5 149 0 8 851 210 254 0 0 chr6 34981644 34981703 -114535334 + A-rich Low_complexity Low_complexity 1 59 0 8 851 279 0 0 0 chr6 34983878 34983909 -114533128 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 851 716 239 243 16 chr6 34984603 34984981 -114532056 + L1MC1 LINE L1 5841 6304 -29 8 851 405 0 0 0 chr6 34985187 34985232 -114531805 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 851 192 125 0 0 chr6 34985499 34985531 -114531506 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 8 851 703 244 94 0 chr6 34986079 34986239 -114530798 + ID_B1 SINE B4 1 175 -49 8 851 24 0 0 0 chr6 34986422 34986446 -114530591 + AT_rich Low_complexity Low_complexity 1 24 0 8 851 551 184 9 18 chr6 34986451 34986562 -114530475 + B1_Mur3 SINE Alu 38 147 -2 8 851 27 0 0 0 chr6 34988248 34988275 -114528762 + AT_rich Low_complexity Low_complexity 1 27 0 8 851 198 0 0 0 chr6 34988966 34988988 -114528049 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 851 180 0 0 0 chr6 34989648 34989668 -114527369 + (A)n Simple_repeat Simple_repeat 1 20 0 8 851 275 250 75 11 chr6 34989901 34989994 -114527043 + MTE2a LTR MaLR 1 99 -320 8 851 645 312 29 39 chr6 34990012 34990322 -114526715 + MTE2a LTR MaLR 73 379 0 8 851 400 169 0 0 chr6 34991464 34991529 -114525508 - B1_Mur2 SINE Alu -25 124 60 8 851 653 271 101 50 chr6 34991539 34991606 -114525431 + ID SINE ID 1 76 -148 8 851 349 319 40 56 chr6 34991606 34991732 -114525305 + B1F1 SINE Alu 3 126 -23 8 851 231 186 0 0 chr6 34991733 34991776 -114525261 + (CAA)n Simple_repeat Simple_repeat 2 44 0 8 851 1208 94 66 11 chr6 34992089 34992272 -114524765 + B2_Mm2 SINE B2 3 195 0 8 851 351 0 0 0 chr6 34992450 34992489 -114524548 + (TTA)n Simple_repeat Simple_repeat 1 39 0 8 851 378 83 0 40 chr6 34992720 34992795 -114524242 + (TTA)n Simple_repeat Simple_repeat 2 73 0 8 851 263 265 137 0 chr6 34995144 34995261 -114521776 - CR1_Mam LINE CR1 -2058 146 14 8 852 29 28 0 0 chr6 34996563 34996599 -114520438 + AT_rich Low_complexity Low_complexity 1 36 0 8 852 249 197 0 0 chr6 34996604 34996670 -114520367 + A-rich Low_complexity Low_complexity 1 66 0 8 852 22 0 0 0 chr6 35002268 35002290 -114514747 + AT_rich Low_complexity Low_complexity 1 22 0 1 852 466 183 226 0 chr6 35002473 35002588 -114514449 - B1_Mm SINE Alu -5 142 2 2 852 21 36 0 0 chr6 35003092 35003120 -114513917 + AT_rich Low_complexity Low_complexity 1 28 0 3 852 254 267 91 41 chr6 35003451 35003572 -114513465 + Charlie2b DNA MER1_type 1785 1911 -871 4 852 229 264 0 54 chr6 35003987 35004043 -114512994 + ID4_ SINE ID 30 82 -1 5 852 274 301 106 11 chr6 35004198 35004292 -114512745 - B4A SINE B4 -23 269 167 6 852 234 244 59 109 chr6 35004238 35004339 -114512698 - PB1D10 SINE Alu -7 110 15 7 852 238 236 150 26 chr6 35004418 35004531 -114512506 + Charlie2b DNA MER1_type 2413 2539 -243 4 852 457 254 32 32 chr6 35004642 35004768 -114512269 + ID_B1 SINE B4 80 205 -19 8 852 495 33 0 0 chr6 35004771 35004832 -114512205 + (GAAA)n Simple_repeat Simple_repeat 2 62 0 9 852 989 234 19 0 chr6 35004900 35005105 -114511932 - B3 SINE B2 -7 209 1 1 852 552 248 164 43 chr6 35005309 35005516 -114511521 + B4A SINE B4 11 242 -50 1 852 241 311 108 0 chr6 35005521 35005595 -114511442 + B3 SINE B2 1 82 -134 1 852 1313 101 26 0 chr6 35005794 35005983 -114511054 + B2_Mm2 SINE B2 1 194 -1 1 852 305 299 0 0 chr6 35006563 35006640 -114510397 + ID4 SINE ID 3 79 -4 1 852 252 59 0 0 chr6 35007570 35007604 -114509433 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 852 287 250 0 0 chr6 35007607 35007663 -114509374 - RSINE1 SINE B4 -33 132 77 1 852 1018 258 32 5 chr6 35007965 35008076 -114508961 + MTD LTR MaLR 4 117 -302 1 852 216 0 0 0 chr6 35008076 35008100 -114508937 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 852 1018 277 58 17 chr6 35008100 35008259 -114508778 + MTD LTR MaLR 88 257 -122 1 852 22 0 0 0 chr6 35008805 35008827 -114508210 + AT_rich Low_complexity Low_complexity 1 22 0 1 852 694 67 82 7 chr6 35009307 35009372 -114507665 + polypyrimidine Low_complexity Low_complexity 79 145 0 2 852 1180 54 0 0 chr6 35009372 35009519 -114507518 - B1_Mus2 SINE Alu 0 147 1 2 852 694 67 82 7 chr6 35009519 35009588 -114507449 + polypyrimidine Low_complexity Low_complexity 2 78 0 2 852 513 213 172 8 chr6 35009588 35009716 -114507321 - B1_Mur3 SINE Alu 0 149 1 2 852 1133 68 0 0 chr6 35009750 35009896 -114507141 - B1_Mus1 SINE Alu -1 147 2 2 852 3171 135 237 20 chr6 35010502 35011106 -114505931 + RMER19A LTR ERVK 3 737 0 2 852 616 102 33 101 chr6 35011412 35011558 -114505479 + B1_Mur4 SINE Alu 2 150 0 2 852 236 130 22 0 chr6 35011583 35011629 -114505408 + GA-rich Low_complexity Low_complexity 2 48 0 2 852 242 329 40 0 chr6 35012172 35012248 -114504789 - Charlie4z DNA MER1_type -65 102 24 2 852 353 254 0 0 chr6 35012449 35012516 -114504521 + ID4 SINE ID 15 81 -2 2 852 255 338 105 12 chr6 35012847 35013009 -114504028 + MIRb SINE MIR 20 196 -72 3 852 203 276 23 0 chr6 35013634 35013721 -114503316 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 852 270 277 110 60 chr6 35014343 35014443 -114502594 - B1F SINE Alu -42 107 3 3 852 765 183 14 27 chr6 35014576 35014722 -114502315 + B1_Mur1 SINE Alu 1 144 -5 3 852 684 255 12 44 chr6 35015296 35015456 -114501581 + RSINE1 SINE B4 11 165 0 3 852 487 252 168 40 chr6 35015516 35015865 -114501172 + MTD LTR MaLR 5 404 -15 3 852 301 328 49 32 chr6 35016069 35016192 -114500845 + MER58A DNA MER1_type 36 160 -64 3 852 267 225 39 21 chr6 35017102 35017195 -114499842 + B4A SINE B4 1 95 -197 3 852 183 80 0 0 chr6 35018019 35018044 -114498993 + (CAG)n Simple_repeat Simple_repeat 2 26 0 3 852 280 324 59 92 chr6 35018045 35018063 -114498974 + B4A SINE B4 70 217 -75 3 852 727 200 30 0 chr6 35018063 35018198 -114498839 + B1_Mur3 SINE Alu 1 139 -10 4 852 189 0 0 0 chr6 35018198 35018219 -114498818 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 852 545 298 203 4 chr6 35021700 35021976 -114495061 + MER20B DNA MER1_type 181 511 -272 4 852 254 352 44 66 chr6 35022026 35022163 -114494874 - MER5A1 DNA MER1_type -17 149 16 4 852 1498 63 0 5 chr6 35022632 35022823 -114494214 + B2_Mm2 SINE B2 1 190 -5 4 852 182 337 96 21 chr6 35023085 35023179 -114493858 - MER5B DNA MER1_type 0 178 78 4 852 1173 59 0 7 chr6 35023427 35023580 -114493457 - B2_Mm2 SINE B2 -5 190 39 4 852 236 293 101 25 chr6 35023935 35024054 -114492983 + L2a LINE L2 3294 3421 -5 4 852 214 250 227 10 chr6 35024099 35024196 -114492841 + PB1D7 SINE Alu 3 120 0 4 852 1052 180 33 37 chr6 35024664 35024878 -114492159 - B3 SINE B2 -3 213 1 4 852 540 81 0 0 chr6 35025469 35025543 -114491494 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 852 534 246 29 44 chr6 35025773 35025909 -114491128 - B1F SINE Alu 0 149 16 5 852 420 329 7 26 chr6 35026025 35026178 -114490859 - RSINE1 SINE B4 -13 152 3 5 852 260 338 84 64 chr6 35026350 35026600 -114490437 + ORR1E LTR MaLR 2 256 -103 5 852 479 283 8 8 chr6 35027191 35027312 -114489725 + RSINE1 SINE B4 2 122 -43 5 852 423 0 0 0 chr6 35027312 35027359 -114489678 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 852 237 296 99 0 chr6 35027564 35027645 -114489392 - MIR3 SINE MIR -49 159 71 5 852 1038 103 14 0 chr6 35027652 35027798 -114489239 - B1_Mur4 SINE Alu -2 148 1 5 852 33 25 0 0 chr6 35027809 35027849 -114489188 + AT_rich Low_complexity Low_complexity 1 40 0 5 852 661 296 83 10 chr6 35028613 35028818 -114488219 - B4A SINE B4 -71 221 2 5 852 279 289 209 0 chr6 35029136 35029299 -114487738 + MIR SINE MIR 5 202 -60 6 852 722 221 50 19 chr6 35029428 35029589 -114487448 + MTEb LTR MaLR 54 219 -160 6 852 225 331 14 78 chr6 35029467 35029608 -114487429 + MLT2B5 LTR ERVL 123 254 -347 6 852 367 331 57 7 chr6 35030500 35030640 -114486397 + RSINE1 SINE B4 2 148 -17 6 852 1056 37 7 0 chr6 35031305 35031440 -114485597 + B1_Mm SINE Alu 12 147 0 6 852 249 33 0 0 chr6 35031440 35031470 -114485567 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 6 852 522 153 176 8 chr6 35031672 35031797 -114485240 + B1_Mus1 SINE Alu 3 148 0 6 852 587 241 9 0 chr6 35031977 35032085 -114484952 + B3 SINE B2 53 161 -55 6 852 288 53 0 0 chr6 35032099 35032137 -114484900 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 6 852 321 26 0 0 chr6 35032844 35032882 -114484155 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 6 852 216 324 0 14 chr6 35033351 35033420 -114483617 + FLAM_A SINE Alu 12 79 -216 7 852 231 277 69 78 chr6 35033469 35033571 -114483466 + PB1D10 SINE Alu 6 106 -11 7 852 1874 74 29 4 chr6 35033725 35033997 -114483040 - L1_Mus4 LINE L1 0 6636 6358 7 852 26 0 0 0 chr6 35034287 35034313 -114482724 + AT_rich Low_complexity Low_complexity 1 26 0 7 852 783 142 0 0 chr6 35034442 35034555 -114482482 + B3 SINE B2 2 114 -102 7 852 3156 193 108 102 chr6 35034659 35035664 -114481373 + RMER1B Other Other 42 1052 -14 7 852 231 328 15 0 chr6 35035991 35036058 -114480979 + ID4 SINE ID 5 72 -11 7 852 225 0 0 0 chr6 35036135 35036160 -114480877 + (A)n Simple_repeat Simple_repeat 1 25 0 7 852 369 291 59 17 chr6 35036334 35036453 -114480584 + B3A SINE B2 69 192 -6 7 852 601 172 17 33 chr6 35036598 35036718 -114480319 + B1_Mur4 SINE Alu 12 129 -21 7 852 2113 138 19 0 chr6 35037071 35037390 -114479647 - ORR1A3 LTR MaLR 0 326 2 8 852 391 286 56 43 chr6 35037583 35037744 -114479293 + ID_B1 SINE B4 21 183 -41 8 852 28 48 0 0 chr6 35038071 35038113 -114478924 + AT_rich Low_complexity Low_complexity 1 42 0 8 852 872 168 7 7 chr6 35038283 35038433 -114478604 + B1_Mur4 SINE Alu 1 150 0 8 852 26 30 0 0 chr6 35038485 35038518 -114478519 + AT_rich Low_complexity Low_complexity 1 33 0 8 852 647 266 30 89 chr6 35038662 35038864 -114478173 + B3A SINE B2 9 198 0 8 852 322 383 40 11 chr6 35039366 35039543 -114477494 + B4 SINE B4 103 284 -8 8 852 699 200 89 0 chr6 35039864 35039999 -114477038 + B1_Mus1 SINE Alu 1 147 -1 8 852 214 237 0 0 chr6 35039999 35040037 -114477000 + polypurine Low_complexity Low_complexity 3 40 0 8 852 485 291 132 6 chr6 35040106 35040265 -114476772 + B3A SINE B2 2 180 -18 8 852 26 0 0 0 chr6 35040270 35040296 -114476741 + AT_rich Low_complexity Low_complexity 1 26 0 9 852 223 255 17 52 chr6 35040359 35040415 -114476622 + PB1D9 SINE Alu 1 54 -66 9 852 234 203 0 119 chr6 35040415 35040482 -114476555 + B1_Mur4 SINE Alu 2 60 -90 9 852 210 255 0 0 chr6 35040486 35040580 -114476457 + GA-rich Low_complexity Low_complexity 2 95 0 9 852 238 85 0 130 chr6 35040583 35040637 -114476400 + 4.5SRNA scRNA scRNA 38 84 -10 9 852 568 198 0 0 chr6 35040591 35040697 -114476340 + B1_Mus2 SINE Alu 42 147 0 9 852 257 214 86 0 chr6 35040726 35040796 -114476241 + PB1D10 SINE Alu 41 116 -1 9 852 423 0 0 0 chr6 35041054 35041101 -114475936 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 852 354 206 207 0 chr6 35041159 35041274 -114475763 - B3A SINE B2 -52 141 1 9 852 4209 44 59 5 chr6 35041356 35041930 -114475107 - MusHAL1 LINE L1 -1612 1100 496 9 852 1630 195 82 26 chr6 35041927 35042306 -114474731 + L1_Mus4 LINE L1 6235 6634 -2 1 852 734 274 52 9 chr6 35042501 35042711 -114474326 + ID_B1 SINE B4 6 224 0 1 852 24 53 0 0 chr6 35042862 35042900 -114474137 + AT_rich Low_complexity Low_complexity 1 38 0 1 852 921 19 0 0 chr6 35043014 35043121 -114473916 + (TTTCC)n Simple_repeat Simple_repeat 4 110 0 1 852 3403 55 0 9 chr6 35043121 35043561 -114473476 - L1_Mus1 LINE L1 -9 6558 6123 1 852 776 241 11 60 chr6 35043974 35044159 -114472878 + B3A SINE B2 20 195 -3 1 852 384 59 0 0 chr6 35044174 35044225 -114472812 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 1 852 1131 203 118 104 chr6 35044243 35044429 -114472608 + ORR1D1 LTR MaLR 22 243 -131 1 852 198 0 0 0 chr6 35044429 35044451 -114472586 + (CCTG)n Simple_repeat Simple_repeat 4 25 0 1 852 1131 203 118 104 chr6 35044451 35044610 -114472427 + ORR1D1 LTR MaLR 244 372 -2 1 852 295 310 0 0 chr6 35044832 35044903 -114472134 + ID4_ SINE ID 3 73 -10 1 852 620 289 160 21 chr6 35045508 35045745 -114471292 - B4A SINE B4 -22 270 1 1 852 860 145 217 0 chr6 35045843 35046009 -114471028 - B3 SINE B2 -14 202 1 1 852 28 0 0 0 chr6 35046058 35046086 -114470951 + AT_rich Low_complexity Low_complexity 1 28 0 1 852 283 254 245 29 chr6 35046221 35046501 -114470536 + L1ME3 LINE L1 5829 6160 -2 1 852 413 296 7 78 chr6 35046740 35046894 -114470143 + RSINE1 SINE B4 10 152 -13 1 852 423 83 0 0 chr6 35047191 35047251 -114469786 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 852 315 154 19 0 chr6 35047259 35047311 -114469726 - tRNA-Ala-GCY_ tRNA tRNA -9 66 14 1 852 268 219 109 0 chr6 35047311 35047323 -114469714 - ID4_ SINE ID -11 72 2 1 852 583 271 14 0 chr6 35047746 35047886 -114469151 - B1_Mur1 SINE Alu -6 143 2 1 852 212 244 0 0 chr6 35048150 35048195 -114468842 + B4 SINE B4 34 78 -214 1 852 317 327 8 50 chr6 35048221 35048340 -114468697 + RSINE1 SINE B4 48 161 -4 1 852 529 243 79 104 chr6 35048368 35048570 -114468467 + B3A SINE B2 2 198 0 1 852 564 15 0 0 chr6 35049505 35049570 -114467467 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 1 852 395 289 96 7 chr6 35050036 35050172 -114466865 + B1F2 SINE Alu 1 148 -1 1 852 833 286 83 66 chr6 35050203 35050599 -114466438 + Lx8 LINE L1 6843 7245 -228 1 852 330 26 0 0 chr6 35050813 35050852 -114466185 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 852 634 134 151 0 chr6 35050961 35051080 -114465957 + B1_Mur3 SINE Alu 13 149 0 1 852 365 251 135 84 chr6 35051119 35051152 -114465885 + B3A SINE B2 4 33 -165 1 852 1259 86 11 11 chr6 35051152 35051328 -114465709 + B2_Mm2 SINE B2 1 176 -19 1 852 365 251 135 84 chr6 35051328 35051472 -114465565 + B3A SINE B2 34 190 -8 1 852 717 246 82 0 chr6 35051505 35051688 -114465349 + B3 SINE B2 4 201 -15 1 852 881 107 71 0 chr6 35052734 35052874 -114464163 - B2_Mm2 SINE B2 -7 188 39 1 852 426 85 0 0 chr6 35052875 35052934 -114464103 - RMER1A Other Other -464 566 508 1 852 313 307 87 9 chr6 35053282 35053397 -114463640 - ID_B1 SINE B4 -2 222 99 1 852 948 166 100 14 chr6 35053432 35053652 -114463385 - RMER1A Other Other 0 1030 792 1 852 387 0 0 0 chr6 35053652 35053695 -114463342 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 852 17020 129 18 4 chr6 35053695 35057459 -114459578 - Lx LINE L1 -13 6641 2805 1 852 2246 144 3 0 chr6 35057458 35057791 -114459246 - RMER1A Other Other -230 800 467 1 852 736 217 70 30 chr6 35057880 35058079 -114458958 - RMER1A Other Other -575 455 275 1 852 340 222 0 0 chr6 35058054 35058117 -114458920 - RMER1B Other Other -603 463 401 1 852 281 302 149 11 chr6 35058230 35058317 -114458720 - RSINE1 SINE B4 -64 101 3 1 852 747 254 63 11 chr6 35058347 35058522 -114458515 - B3A SINE B2 -14 184 1 1 852 186 43 0 0 chr6 35058555 35058578 -114458459 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 1 852 907 256 82 5 chr6 35058591 35058787 -114458250 + B3 SINE B2 1 211 -5 1 852 507 325 0 69 chr6 35058812 35058987 -114458050 - RSINE1 SINE B4 -1 164 2 1 852 301 239 202 11 chr6 35058991 35059080 -114457957 - PB1D10 SINE Alu -3 114 9 1 852 600 221 329 23 chr6 35059270 35059431 -114457606 - B3 SINE B2 0 216 7 1 852 242 202 113 3 chr6 35059670 35059733 -114457304 - B4A SINE B4 -227 65 3 1 852 826 229 104 0 chr6 35059970 35060153 -114456884 - B3 SINE B2 -14 202 1 1 852 597 248 82 7 chr6 35060193 35060339 -114456698 - RSINE1 SINE B4 -6 159 3 1 852 885 213 65 20 chr6 35061426 35061627 -114455410 + B3 SINE B2 1 210 -6 1 852 1086 109 0 7 chr6 35061960 35062107 -114454930 - B1_Mus1 SINE Alu -2 146 1 1 852 753 227 0 0 chr6 35062217 35062349 -114454688 + B1_Mur1 SINE Alu 8 139 -10 1 852 183 80 0 0 chr6 35062349 35062374 -114454663 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 852 270 0 0 0 chr6 35062498 35062528 -114454509 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 852 756 33 0 0 chr6 35062528 35062618 -114454419 + (GA)n Simple_repeat Simple_repeat 2 92 0 1 852 384 292 0 0 chr6 35062649 35062769 -114454268 + L1MD2 LINE L1 3410 3529 -2617 1 852 398 275 0 0 chr6 35062792 35062872 -114454165 + ID4 SINE ID 4 83 0 1 852 486 256 0 102 chr6 35062898 35063085 -114453952 + L1MC LINE L1 3670 3837 -2309 1 852 904 256 15 0 chr6 35063101 35063296 -114453741 - B3 SINE B2 -9 207 10 1 852 582 277 47 26 chr6 35063337 35063530 -114453507 + B3A SINE B2 1 197 -1 1 852 450 256 147 68 chr6 35063648 35063988 -114453049 + L1M4 LINE L1 3958 4324 -1822 1 852 255 31 0 0 chr6 35063999 35064031 -114453006 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 1 852 1336 48 0 12 chr6 35064031 35064192 -114452845 - B2_Mm1a SINE B2 -33 160 1 1 852 1231 261 52 29 chr6 35064268 35064615 -114452422 + MTEa LTR MaLR 1 355 -24 1 852 532 278 109 48 chr6 35064779 35065218 -114451819 + L1MD2 LINE L1 4459 4924 -1222 1 852 276 326 35 110 chr6 35065222 35065367 -114451670 + ID_B1 SINE B4 24 157 -67 1 852 379 260 52 0 chr6 35065304 35065400 -114451637 + PB1D10 SINE Alu 9 109 -8 1 852 1256 73 83 11 chr6 35065725 35065906 -114451131 + B2_Mm2 SINE B2 1 194 -1 1 852 702 198 0 0 chr6 35065910 35066026 -114451011 + B1_Mus2 SINE Alu 2 117 -30 1 852 206 200 0 0 chr6 35066057 35066092 -114450945 + polypurine Low_complexity Low_complexity 3 37 0 1 852 304 274 47 129 chr6 35066095 35066163 -114450874 + L1MD2 LINE L1 5167 5238 -908 1 852 524 243 17 191 chr6 35066163 35066336 -114450701 - B1F SINE Alu -6 143 1 1 852 304 274 47 129 chr6 35066336 35066389 -114450648 + L1MD2 LINE L1 5239 5279 -867 1 852 1115 50 43 0 chr6 35066389 35066529 -114450508 + B1_Mm SINE Alu 2 147 0 1 852 304 274 47 129 chr6 35066529 35066599 -114450438 + L1MD2 LINE L1 5280 5343 -803 1 852 310 233 140 32 chr6 35066644 35066737 -114450300 + B1F2 SINE Alu 14 116 -1 1 852 1131 222 140 19 chr6 35066835 35067143 -114449894 - MTE2a LTR MaLR 0 379 35 1 852 913 249 10 29 chr6 35067225 35067432 -114449605 + ID_B1 SINE B4 8 210 -14 1 852 827 261 28 32 chr6 35067446 35067695 -114449342 + L1MD2 LINE L1 5588 5835 -524 1 852 276 188 122 68 chr6 35067965 35068039 -114448998 + B3A SINE B2 82 159 -39 1 852 1243 61 0 13 chr6 35068078 35068227 -114448810 + B1_Mus1 SINE Alu 2 148 0 1 852 249 165 35 65 chr6 35068236 35068305 -114448732 + B1_Mus1 SINE Alu 1 44 -104 1 852 306 0 0 0 chr6 35068298 35068333 -114448704 + U2 snRNA snRNA 1 35 -153 1 852 393 238 12 0 chr6 35068336 35068416 -114448621 - B3A SINE B2 -115 83 3 1 852 231 184 39 39 chr6 35068526 35068577 -114448460 + MT2B LTR ERVL 197 247 -354 1 852 328 220 85 32 chr6 35068533 35068600 -114448437 + B1_Mus2 SINE Alu 49 115 -32 1 852 459 0 0 0 chr6 35068600 35068651 -114448386 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 852 328 220 85 32 chr6 35068651 35068677 -114448360 + B1_Mus2 SINE Alu 116 146 -1 1 852 211 219 0 0 chr6 35068679 35068720 -114448317 + A-rich Low_complexity Low_complexity 3 43 0 1 852 26 0 0 0 chr6 35068864 35068890 -114448147 + AT_rich Low_complexity Low_complexity 1 26 0 1 852 772 252 52 47 chr6 35068949 35069161 -114447876 - B3 SINE B2 -2 214 2 1 852 668 320 0 0 chr6 35069208 35069358 -114447679 - RSINE1 SINE B4 -13 152 3 1 852 265 323 0 31 chr6 35069358 35069454 -114447583 - MIRm SINE MIR -122 154 62 1 852 399 232 0 0 chr6 35070017 35070086 -114446951 + ID4_ SINE ID 2 70 -13 1 852 223 0 0 98 chr6 35070381 35070422 -114446615 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 1 852 342 254 155 82 chr6 35070491 35070697 -114446340 - MIRb SINE MIR -8 260 40 1 852 697 276 70 5 chr6 35070814 35071000 -114446037 + B3 SINE B2 2 199 -17 1 852 621 238 6 106 chr6 35071010 35071170 -114445867 + B1_Mur1 SINE Alu 3 146 -3 1 852 192 77 0 0 chr6 35071269 35071295 -114445742 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 852 817 26 37 68 chr6 35071295 35071458 -114445579 + (GA)n Simple_repeat Simple_repeat 2 159 0 1 852 225 65 0 0 chr6 35071545 35071576 -114445461 + (GA)n Simple_repeat Simple_repeat 1 31 0 1 852 530 213 31 29 chr6 35071606 35071744 -114445293 - B3A SINE B2 -60 135 1 1 852 519 183 117 0 chr6 35071774 35071894 -114445143 - B1F SINE Alu -1 148 15 1 852 887 36 9 0 chr6 35071900 35072011 -114445026 + B1_Mm SINE Alu 36 147 0 1 852 542 244 37 69 chr6 35072343 35072532 -114444505 + B3A SINE B2 1 183 -15 1 852 490 231 83 0 chr6 35072706 35072814 -114444223 + PB1D10 SINE Alu 1 117 0 1 852 1148 214 14 5 chr6 35073579 35073790 -114443247 + B3 SINE B2 2 214 -2 1 852 425 163 9 186 chr6 35073803 35073916 -114443121 + ID_B1 SINE B4 77 169 -55 1 852 880 244 0 24 chr6 35073944 35074108 -114442929 + RSINE1 SINE B4 4 163 -2 2 852 244 196 20 0 chr6 35074204 35074255 -114442782 + ID4 SINE ID 1 52 -31 2 852 833 260 77 94 chr6 35074489 35074786 -114442251 - B4A SINE B4 0 292 1 2 852 275 284 0 56 chr6 35075102 35075173 -114441864 + ID_B1 SINE B4 85 151 -73 2 852 1403 75 23 0 chr6 35075300 35075473 -114441564 + B2_Mm1t SINE B2 3 179 -14 2 852 354 116 27 30 chr6 35075486 35075596 -114441441 + B2_Mm2 SINE B2 47 192 -3 2 852 669 276 13 6 chr6 35075857 35076014 -114441023 + B3A SINE B2 35 192 -6 2 852 22 0 0 0 chr6 35076096 35076118 -114440919 + AT_rich Low_complexity Low_complexity 1 22 0 2 852 217 280 0 20 chr6 35077200 35077251 -114439786 - PB1D7 SINE Alu -1 119 70 2 852 345 82 0 0 chr6 35077335 35077384 -114439653 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 2 852 264 292 56 0 chr6 35077391 35077463 -114439574 - PB1 SINE Alu -49 78 3 2 852 1546 69 16 11 chr6 35077762 35077953 -114439084 + B2_Mm2 SINE B2 1 192 -3 2 852 252 77 0 0 chr6 35078454 35078493 -114438544 + (GTTTG)n Simple_repeat Simple_repeat 1 39 0 2 852 832 201 14 14 chr6 35078493 35078630 -114438407 - B1_Mur2 SINE Alu -9 140 3 2 852 816 242 156 12 chr6 35079206 35079449 -114437588 + B4 SINE B4 3 280 -12 2 852 578 266 21 7 chr6 35080415 35080555 -114436482 + B1F SINE Alu 8 149 0 2 852 451 228 89 0 chr6 35081365 35081466 -114435571 + B1_Mur1 SINE Alu 39 148 -1 2 852 246 148 0 0 chr6 35081467 35081521 -114435516 + (GAAA)n Simple_repeat Simple_repeat 1 54 0 2 852 237 132 0 0 chr6 35081526 35081564 -114435473 + (GGA)n Simple_repeat Simple_repeat 2 39 0 2 852 26 0 0 0 chr6 35081796 35081822 -114435215 + AT_rich Low_complexity Low_complexity 1 26 0 2 852 239 140 0 20 chr6 35083315 35083366 -114433671 + GA-rich Low_complexity Low_complexity 1 50 0 2 852 204 333 81 49 chr6 35084617 35084740 -114432297 - L2b LINE L2 -1 3374 3248 2 852 238 245 0 0 chr6 35084795 35084848 -114432189 + ID4 SINE ID 1 53 -30 2 852 449 204 101 10 chr6 35084932 35085031 -114432006 + B1_Mur3 SINE Alu 2 109 -40 2 852 597 185 0 0 chr6 35085168 35085287 -114431750 + (TA)n Simple_repeat Simple_repeat 2 120 0 2 852 712 117 61 30 chr6 35085363 35085495 -114431542 + B2_Mm2 SINE B2 57 192 -3 2 852 294 303 74 58 chr6 35085538 35085727 -114431310 - MER20B DNA MER1_type -133 650 459 2 852 782 114 91 8 chr6 35086085 35086217 -114430820 - B1_Mus1 SINE Alu 0 148 6 2 852 1421 109 0 10 chr6 35086415 35086609 -114430428 - B2_Mm2 SINE B2 -1 194 3 2 852 532 170 70 0 chr6 35086613 35086713 -114430324 - B1_Mm SINE Alu -1 146 40 2 852 541 296 39 22 chr6 35086786 35086966 -114430071 - B3A SINE B2 -15 183 1 2 852 369 364 90 10 chr6 35087138 35087338 -114429699 - L2b LINE L2 -612 2807 2592 2 852 283 273 51 25 chr6 35087688 35087767 -114429270 + BC1_Mm scRNA scRNA 4 84 -68 2 852 1127 44 81 0 chr6 35088048 35088184 -114428853 + B1_Mus2 SINE Alu 1 147 0 2 852 318 50 0 0 chr6 35088449 35088489 -114428548 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 852 530 270 70 26 chr6 35088653 35088809 -114428228 - RSINE1 SINE B4 0 165 3 2 852 23 0 0 0 chr6 35088809 35088832 -114428205 + AT_rich Low_complexity Low_complexity 1 23 0 2 852 926 234 46 31 chr6 35088832 35089026 -114428011 + B3 SINE B2 2 198 -18 2 852 549 165 0 20 chr6 35089066 35089165 -114427872 + B1_Mur1 SINE Alu 48 144 -5 2 852 719 252 7 0 chr6 35089178 35089317 -114427720 - B3A SINE B2 -24 174 35 2 852 553 311 92 0 chr6 35089310 35089474 -114427563 + ID_B1 SINE B4 45 223 -1 2 852 280 305 55 69 chr6 35089688 35089906 -114427131 + L1ME3B LINE L1 5624 5838 -402 2 852 391 328 114 23 chr6 35089923 35090054 -114426983 + ID_B1 SINE B4 82 224 0 2 852 774 221 0 0 chr6 35090072 35090208 -114426829 + B1_Mur2 SINE Alu 1 136 -13 2 852 234 0 0 0 chr6 35090213 35090239 -114426798 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 852 723 188 95 69 chr6 35090242 35090431 -114426606 + B2_Mm2 SINE B2 1 194 -1 2 852 1360 94 22 0 chr6 35090435 35090615 -114426422 + B2_Mm2 SINE B2 1 184 -11 2 852 333 172 0 0 chr6 35090633 35090697 -114426340 + GA-rich Low_complexity Low_complexity 2 65 0 2 852 711 267 0 52 chr6 35090750 35090924 -114426113 + RSINE1 SINE B4 1 165 0 2 852 320 317 159 30 chr6 35090938 35091234 -114425803 + L1ME3B LINE L1 5857 6190 -50 2 852 543 323 45 62 chr6 35091278 35091456 -114425581 + B4A SINE B4 118 292 0 2 852 720 200 8 0 chr6 35091644 35091764 -114425273 + B1F1 SINE Alu 12 132 -17 2 852 222 37 0 0 chr6 35091768 35091795 -114425242 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 852 366 235 6 0 chr6 35092350 35092470 -114424567 - B3 SINE B2 0 216 1 2 852 210 164 55 0 chr6 35092846 35092901 -114424136 + T-rich Low_complexity Low_complexity 2 59 0 2 852 467 180 9 74 chr6 35092905 35093013 -114424024 - B1_Mur2 SINE Alu 0 149 49 2 852 239 241 0 138 chr6 35093013 35093031 -114424006 - ID_B1 SINE B4 0 220 113 2 852 836 138 338 0 chr6 35093097 35093257 -114423780 - B3 SINE B2 -1 215 2 2 852 232 356 102 0 chr6 35093408 35093526 -114423511 - MLT1H2 LTR MaLR -273 216 87 2 852 930 95 56 0 chr6 35094210 35094336 -114422701 - B1_Mus1 SINE Alu -11 137 5 2 852 292 126 28 37 chr6 35094349 35094456 -114422581 + T-rich Low_complexity Low_complexity 1 106 0 2 852 947 154 14 0 chr6 35094457 35094600 -114422437 - B1_Mus2 SINE Alu 0 147 3 2 852 1873 162 97 0 chr6 35094602 35094941 -114422096 - ORR1D1 LTR MaLR -2 372 1 2 852 462 266 0 58 chr6 35095208 35095328 -114421709 - PB1D9 SINE Alu -6 114 2 2 852 606 302 80 0 chr6 35095389 35095551 -114421486 + B3A SINE B2 3 177 -21 2 852 240 299 0 49 chr6 35095550 35095631 -114421406 + B3A SINE B2 122 198 0 2 852 676 264 21 16 chr6 35095699 35095888 -114421149 - B3 SINE B2 0 216 27 2 852 793 271 147 11 chr6 35096143 35096408 -114420629 - MER21B LTR ERV1 -90 773 473 2 852 593 125 161 0 chr6 35096411 35096523 -114420514 + URR1B DNA MER1_type 1 130 -95 2 852 1387 90 11 0 chr6 35096523 35096700 -114420337 + B2_Mm1t SINE B2 1 179 -14 2 852 317 140 13 34 chr6 35096755 35096822 -114420215 + B2_Mm2 SINE B2 46 116 -82 2 852 528 128 138 0 chr6 35096854 35096948 -114420089 + URR1B DNA MER1_type 119 225 0 2 852 1176 323 78 22 chr6 35096979 35097387 -114419650 - MER21B LTR ERV1 -430 433 3 2 852 246 204 20 0 chr6 35097414 35097463 -114419574 + MT2A LTR ERVL 3 52 -481 2 852 238 295 16 0 chr6 35097463 35097475 -114419562 + MTE2b LTR MaLR 3 64 -315 2 852 1705 41 0 5 chr6 35097475 35097669 -114419368 + B2_Mm1t SINE B2 1 193 0 2 852 287 114 0 0 chr6 35097738 35097782 -114419255 + ORR1C2 LTR MaLR 1 44 -340 2 852 768 140 0 123 chr6 35097802 35097946 -114419091 - B1_Mm SINE Alu 0 147 23 2 852 1062 151 43 38 chr6 35097946 35098132 -114418905 + B2_Mm2 SINE B2 2 188 -7 2 852 768 140 0 123 chr6 35098132 35098150 -114418887 - B1_Mm SINE Alu -125 22 5 2 852 1759 165 85 21 chr6 35098138 35098478 -114418559 + ORR1C2 LTR MaLR 23 384 0 2 852 1052 298 11 43 chr6 35098564 35098606 -114418431 + MT2A LTR ERVL 194 234 -299 2 852 618 14 0 0 chr6 35098606 35098677 -114418360 + (CTG)n Simple_repeat Simple_repeat 3 73 0 2 852 1052 298 11 43 chr6 35098677 35098985 -114418052 + MT2A LTR ERVL 235 533 0 2 852 292 266 75 40 chr6 35099005 35099228 -114417809 - L1MEg LINE L1 -4504 1896 1660 2 852 1630 158 41 115 chr6 35099535 35099978 -114417059 - RMER17C LTR ERVK 0 410 1 2 852 392 256 37 52 chr6 35100699 35100835 -114416202 - B1F2 SINE Alu -14 135 2 2 852 3520 243 80 39 chr6 35100980 35102218 -114414819 - Lx6 LINE L1 -136 7324 5728 2 852 1003 147 10 40 chr6 35102201 35102329 -114414708 - L1_Mur2 LINE L1 -1224 4653 4525 2 852 3599 35 5 0 chr6 35102329 35102723 -114414314 - MTA_Mm LTR MaLR 0 396 1 2 852 1003 147 10 40 chr6 35102723 35102793 -114414244 - L1_Mur2 LINE L1 -1353 4524 4461 2 852 562 245 117 41 chr6 35102814 35103104 -114413933 + RMER20B LTR ERVK 234 545 -82 2 852 417 152 95 32 chr6 35103104 35103199 -114413838 - L1_Mur2 LINE L1 -3714 2166 2066 2 852 404 335 81 98 chr6 35103233 35103753 -114413284 - RLTR11A2 LTR ERVK -16 511 1 2 852 615 78 0 0 chr6 35103754 35103844 -114413193 + (TG)n Simple_repeat Simple_repeat 2 91 0 2 852 4154 181 34 36 chr6 35103856 35105047 -114411990 - L1_Mur3 LINE L1 -3834 2043 863 2 852 650 238 176 38 chr6 35105596 35105694 -114411343 - Lx8 LINE L1 -36 7437 7340 2 852 2503 105 9 3 chr6 35105694 35106019 -114411018 - ORR1A2 LTR MaLR 0 327 1 2 852 579 40 0 0 chr6 35106020 35106094 -114410943 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2 852 650 238 176 38 chr6 35106094 35106255 -114410782 - Lx8 LINE L1 -134 7339 7140 2 852 626 216 7 48 chr6 35106276 35106422 -114410615 - B1_Mur1 SINE Alu -1 148 9 2 852 368 300 43 91 chr6 35106282 35106491 -114410546 - ID_B1 SINE B4 -7 217 19 2 852 1764 246 163 13 chr6 35106491 35107030 -114410007 - Lx8 LINE L1 -383 7090 6471 2 852 4671 89 55 0 chr6 35107093 35107768 -114409269 + RLTR19B LTR ERVK 4 715 0 2 852 1027 272 56 13 chr6 35107768 35108070 -114408967 - Lx8 LINE L1 -1051 6422 6108 2 852 213 39 0 0 chr6 35108237 35108263 -114408774 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 2 852 1130 30 82 0 chr6 35108264 35108399 -114408638 - B1_Mus1 SINE Alu 0 148 3 2 852 528 292 33 0 chr6 35108628 35108716 -114408321 - PB1 SINE Alu -3 124 37 2 852 1986 160 4 116 chr6 35108716 35109175 -114407862 + RMER17C LTR ERVK 1 408 -2 2 852 528 292 33 0 chr6 35109175 35109206 -114407831 - PB1 SINE Alu -91 36 2 2 852 3411 51 5 2 chr6 35109304 35109699 -114407338 - MTA_Mm LTR MaLR 0 396 1 2 852 8817 63 9 26 chr6 35109699 35110701 -114406336 - MTA_Mm-int LTR MaLR 0 1098 120 2 852 1238 69 7 0 chr6 35110701 35110846 -114406191 - B1_Mus2 SINE Alu 0 147 2 2 852 8817 63 9 26 chr6 35110846 35110960 -114406077 - MTA_Mm-int LTR MaLR -979 119 1 2 852 3147 60 34 3 chr6 35110960 35111344 -114405693 - MTA_Mm LTR MaLR 0 396 1 2 852 374 294 36 164 chr6 35111344 35111381 -114405656 - MTE2b LTR MaLR -5 354 320 2 852 902 134 6 45 chr6 35111381 35111537 -114405500 + B1_Mur4 SINE Alu 1 150 0 2 852 1145 272 36 43 chr6 35111537 35111894 -114405143 - MTE2b LTR MaLR -42 337 1 2 852 621 40 0 0 chr6 35111972 35112048 -114404989 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 852 238 306 45 36 chr6 35112464 35112576 -114404461 + L1MC LINE L1 5704 5816 -2066 3 852 3412 57 28 5 chr6 35112848 35113274 -114403763 - RLTR10C LTR ERVK 0 436 1 3 852 1074 144 36 31 chr6 35113577 35113765 -114403272 + B2_Mm2 SINE B2 1 190 -5 3 852 1127 88 0 0 chr6 35113765 35113913 -114403124 + B1_Mus1 SINE Alu 1 148 0 3 852 494 291 67 7 chr6 35114165 35114300 -114402737 - RSINE1 SINE B4 -20 145 3 3 852 672 220 126 40 chr6 35114368 35114567 -114402470 + ID_B1 SINE B4 5 220 -4 3 852 307 189 67 13 chr6 35114749 35114824 -114402213 - ID4 SINE ID 0 83 5 3 852 630 0 0 0 chr6 35114929 35114999 -114402038 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 852 1090 65 7 14 chr6 35115000 35115141 -114401896 - B1_Mus1 SINE Alu -7 141 2 3 852 940 149 76 16 chr6 35115305 35115489 -114401548 - B2_Mm2 SINE B2 0 195 1 3 852 279 0 0 0 chr6 35115502 35115533 -114401504 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 852 1090 74 0 0 chr6 35115534 35115669 -114401368 - B1_Mus2 SINE Alu -12 135 1 3 852 470 61 15 0 chr6 35115927 35115993 -114401044 + (TTCA)n Simple_repeat Simple_repeat 1 67 0 3 852 351 297 81 37 chr6 35115993 35116154 -114400883 + MIR SINE MIR 9 176 -86 3 852 183 300 69 62 chr6 35116267 35116427 -114400610 - L2c LINE L2 -38 3349 3189 3 852 806 188 14 0 chr6 35116683 35116821 -114400216 + B1_Mur4 SINE Alu 2 141 -9 3 852 435 68 0 0 chr6 35116821 35116880 -114400157 + (CCAA)n Simple_repeat Simple_repeat 2 60 0 3 852 287 224 30 0 chr6 35117141 35117208 -114399829 - ID4_ SINE ID -11 72 4 3 852 187 328 84 0 chr6 35117408 35117527 -114399510 + MIRc SINE MIR 15 143 -125 3 852 456 132 0 0 chr6 35117974 35118057 -114398980 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 852 836 227 42 24 chr6 35118822 35119034 -114398003 - B3 SINE B2 0 216 1 3 852 249 175 0 0 chr6 35119911 35119951 -114397086 + ID4_ SINE ID 28 67 -16 3 852 2707 198 41 4 chr6 35120280 35120793 -114396244 + MT2A LTR ERVL 1 532 -1 3 852 246 222 81 58 chr6 35121575 35121661 -114395376 - MTEa LTR MaLR -14 365 278 3 852 405 280 25 8 chr6 35121836 35121955 -114395082 - MLT1A1 LTR MaLR -280 128 8 3 852 590 217 50 21 chr6 35121962 35122103 -114394934 + B1_Mur3 SINE Alu 5 149 0 3 852 916 88 23 4 chr6 35122110 35122283 -114394754 + B2_Mm2 SINE B2 1 172 -21 3 852 1190 68 0 0 chr6 35122343 35122491 -114394546 - B1_Mus1 SINE Alu 0 148 1 3 852 1138 99 94 0 chr6 35122496 35122667 -114394370 - B2_Mm2 SINE B2 -8 187 1 3 852 1120 74 0 39 chr6 35123544 35123698 -114393339 + B1_Mus1 SINE Alu 1 148 0 3 852 555 162 0 0 chr6 35123698 35123797 -114393240 + GA-rich Low_complexity Low_complexity 1 99 0 3 852 1433 54 37 16 chr6 35124050 35124238 -114392799 - B2_Mm2 SINE B2 -3 192 1 3 852 1217 234 118 26 chr6 35124592 35124939 -114392098 - MTE2b LTR MaLR 0 379 1 3 852 560 125 19 37 chr6 35125482 35125590 -114391447 + B1_Mur4 SINE Alu 13 118 -32 3 852 199 109 21 21 chr6 35125605 35125632 -114391405 + T-rich Low_complexity Low_complexity 21 48 0 3 852 860 124 78 0 chr6 35125632 35125761 -114391276 - B1_Mur4 SINE Alu -7 143 5 3 852 199 109 21 21 chr6 35125761 35125780 -114391257 + T-rich Low_complexity Low_complexity 3 20 0 3 852 1184 55 0 7 chr6 35126463 35126611 -114390426 - B1_Mus2 SINE Alu 0 147 1 3 852 1369 109 16 0 chr6 35126790 35126982 -114390055 - B2_Mm2 SINE B2 0 195 1 3 106 1146 62 0 20 chr6 35127154 35127303 -114389734 - B1_Mm SINE Alu 0 147 2 3 853 25 75 0 0 chr6 35127663 35127716 -114389321 + GC_rich Low_complexity Low_complexity 1 53 0 3 853 1014 84 0 0 chr6 35128769 35128900 -114388137 - B1_Mus1 SINE Alu -16 132 2 3 853 350 229 138 112 chr6 35129237 35129287 -114387750 + L1MB2 LINE L1 5760 5811 -360 3 853 1350 100 11 0 chr6 35129287 35129477 -114387560 - B2_Mm1t SINE B2 0 193 2 3 853 350 229 138 112 chr6 35129477 35129686 -114387351 + L1MB2 LINE L1 5812 6026 -145 3 853 237 65 0 0 chr6 35129752 35129783 -114387254 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 853 451 314 19 13 chr6 35130597 35130755 -114386282 - B3A SINE B2 -39 159 1 3 853 450 36 0 0 chr6 35130795 35130851 -114386186 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 853 322 247 71 0 chr6 35130876 35130961 -114386076 - PB1D7 SINE Alu -12 108 18 3 853 1127 95 0 0 chr6 35131011 35131158 -114385879 - B1_Mus1 SINE Alu -1 147 1 3 853 321 267 40 72 chr6 35131940 35132065 -114384972 - PB1 SINE Alu -6 121 1 3 853 242 204 0 0 chr6 35132337 35132381 -114384656 - tRNA-Ala-GCA tRNA tRNA -15 60 17 3 853 250 263 145 0 chr6 35132990 35133066 -114383971 + PB1D10 SINE Alu 2 88 -29 3 853 198 0 0 0 chr6 35133080 35133102 -114383935 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 3 853 448 241 211 29 chr6 35133206 35133377 -114383660 - B3 SINE B2 -13 203 2 3 853 594 236 28 0 chr6 35133395 35133539 -114383498 - B1_Mur1 SINE Alu 0 149 2 3 853 238 305 124 0 chr6 35134108 35134213 -114382824 - RSINE1 SINE B4 -19 146 29 3 853 325 165 156 102 chr6 35134682 35134810 -114382227 - B1F SINE Alu 0 149 15 3 853 274 324 87 14 chr6 35134852 35134990 -114382047 - RSINE1 SINE B4 -10 155 8 3 853 232 208 38 0 chr6 35135123 35135176 -114381861 - PB1D10 SINE Alu -7 110 56 3 853 261 0 0 0 chr6 35135211 35135240 -114381797 + (T)n Simple_repeat Simple_repeat 1 29 0 3 853 275 339 62 8 chr6 35135261 35135389 -114381648 + MIR3 SINE MIR 30 164 -44 3 853 3079 66 13 2 chr6 35135429 35135825 -114381212 + MTB LTR MaLR 1 400 0 3 853 238 351 0 0 chr6 35135879 35135956 -114381081 + ID4 SINE ID 1 77 -6 3 853 1076 116 105 0 chr6 35136678 35136850 -114380187 - B2_Mm2 SINE B2 -5 190 1 3 853 632 247 196 6 chr6 35136893 35137072 -114379965 - B3 SINE B2 -3 213 1 3 853 26 30 0 0 chr6 35137348 35137381 -114379656 + AT_rich Low_complexity Low_complexity 1 33 0 3 853 414 202 34 0 chr6 35137916 35138005 -114379032 - BC1_Mm scRNA scRNA -59 93 2 3 853 261 57 0 0 chr6 35138258 35138293 -114378744 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 3 853 782 101 15 44 chr6 35138293 35138423 -114378614 - B1_Mus2 SINE Alu -8 139 14 3 853 462 197 41 62 chr6 35138423 35138439 -114378598 - ID_B1 SINE B4 -13 211 69 3 853 229 216 0 0 chr6 35139374 35139425 -114377612 + T-rich Low_complexity Low_complexity 1 51 0 3 853 517 211 130 23 chr6 35139426 35139557 -114377480 - B1_Mur1 SINE Alu -1 148 4 3 853 1008 160 193 0 chr6 35140121 35140302 -114376735 - B3 SINE B2 0 216 1 3 853 189 0 0 0 chr6 35140306 35140327 -114376710 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 853 413 206 0 10 chr6 35140327 35140430 -114376607 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 853 878 131 51 45 chr6 35140430 35140606 -114376431 - B2_Mm2 SINE B2 -18 177 1 3 853 422 328 29 21 chr6 35140628 35140693 -114376344 - ID_B1 SINE B4 0 224 158 3 853 516 239 159 0 chr6 35140693 35140831 -114376206 - RSINE1 SINE B4 -2 163 4 3 853 422 328 29 21 chr6 35140831 35140905 -114376132 - ID_B1 SINE B4 -67 157 84 3 853 459 0 0 0 chr6 35141173 35141224 -114375813 + (TTTTG)n Simple_repeat Simple_repeat 5 55 0 3 853 697 191 14 0 chr6 35141224 35141364 -114375673 - B1_Mur4 SINE Alu -7 143 2 3 853 709 247 93 16 chr6 35142124 35142317 -114374720 - B3 SINE B2 -7 209 2 3 853 541 147 103 8 chr6 35142417 35142534 -114374503 + B1_Mur2 SINE Alu 20 147 -2 3 853 226 309 0 80 chr6 35142704 35142792 -114374245 - ID2 SINE ID -1 82 2 3 853 646 206 30 8 chr6 35142789 35142921 -114374116 - ID_B1 SINE B4 0 224 90 3 853 1792 125 51 71 chr6 35143029 35143365 -114373672 + ORR1A4 LTR MaLR 1 329 0 3 853 703 245 66 50 chr6 35143525 35143766 -114373271 - MTEb LTR MaLR -51 328 84 3 853 664 176 8 8 chr6 35143774 35143894 -114373143 + B1F2 SINE Alu 29 148 -1 3 853 718 170 102 15 chr6 35144064 35144201 -114372836 - B1_Mur1 SINE Alu 0 149 1 3 853 1177 126 11 6 chr6 35144628 35144811 -114372226 - B2_Mm2 SINE B2 -11 184 1 3 853 472 188 71 0 chr6 35145133 35145245 -114371792 - RSINE1 SINE B4 -37 128 9 3 853 632 286 133 20 chr6 35145402 35145808 -114371229 - L1MD LINE L1 -3192 2954 2503 3 853 213 171 0 47 chr6 35146074 35146117 -114370920 + CT-rich Low_complexity Low_complexity 4 44 0 3 853 216 158 0 0 chr6 35147460 35147498 -114369539 + T-rich Low_complexity Low_complexity 1 38 0 3 853 250 172 59 59 chr6 35147500 35147568 -114369469 - MurSatRep1 Unknown Unknown -1850 287 220 3 853 1345 68 40 0 chr6 35147572 35147749 -114369288 - B2_Mm2 SINE B2 -10 185 2 3 853 1211 35 7 0 chr6 35148053 35148198 -114368839 - B1_Mus2 SINE Alu -1 146 1 3 853 241 186 0 0 chr6 35148199 35148242 -114368795 - B3A SINE B2 -155 43 1 3 853 1118 56 21 0 chr6 35148281 35148425 -114368612 + B1_Mus1 SINE Alu 2 148 0 3 853 579 221 108 25 chr6 35148428 35148586 -114368451 + B3A SINE B2 27 197 -1 3 853 275 312 125 0 chr6 35149284 35149412 -114367625 - B1F SINE Alu -5 144 1 3 853 3340 59 127 30 chr6 35150225 35150698 -114366339 - MURVY-LTR LTR ERV1 0 519 1 4 853 1522 53 11 0 chr6 35150726 35150915 -114366122 + B2_Mm1t SINE B2 2 192 -1 4 853 1361 94 21 0 chr6 35151342 35151533 -114365504 - B2_Mm2 SINE B2 0 195 1 4 853 281 197 0 53 chr6 35151852 35151927 -114365110 + PB1 SINE Alu 57 127 0 4 853 1000 132 236 0 chr6 35152827 35153009 -114364028 - URR1A DNA MER1_type 0 226 2 4 853 4013 28 4 15 chr6 35153096 35153569 -114363468 - L1Md_F2 LINE L1 0 6582 6115 4 853 505 278 45 8 chr6 35154231 35154365 -114362672 - RSINE1 SINE B4 -13 152 14 4 853 412 322 0 0 chr6 35154513 35154631 -114362406 - PB1D7 SINE Alu 0 120 3 4 853 463 308 28 0 chr6 35154701 35154844 -114362193 - RSINE1 SINE B4 -17 148 2 4 853 801 163 93 10 chr6 35154857 35155062 -114361975 - Lx9 LINE L1 -1 7643 7422 4 853 461 203 203 0 chr6 35156086 35156219 -114360818 - MIR SINE MIR -97 165 6 4 853 402 198 271 17 chr6 35156534 35156652 -114360385 + B1_Mur4 SINE Alu 2 149 -1 4 853 29 60 0 0 chr6 35157276 35157326 -114359711 + AT_rich Low_complexity Low_complexity 1 50 0 4 853 324 188 0 0 chr6 35158228 35158297 -114358740 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 853 306 252 72 112 chr6 35158551 35158676 -114358361 + RSINE1 SINE B4 2 121 -44 4 853 432 0 0 0 chr6 35158676 35158724 -114358313 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 853 1669 21 0 20 chr6 35159051 35159247 -114357790 - B2_Mm1a SINE B2 0 193 2 4 853 268 309 0 0 chr6 35159584 35159652 -114357385 - MIR SINE MIR -194 68 1 4 853 847 222 97 0 chr6 35159848 35160033 -114357004 - B3 SINE B2 -10 206 4 4 853 297 210 37 0 chr6 35160079 35160160 -114356877 - MER20 DNA MER1_type -3 216 133 4 853 1408 80 32 0 chr6 35160188 35160376 -114356661 - B2_Mm2 SINE B2 0 195 2 4 853 1147 85 6 0 chr6 35160464 35160628 -114356409 + URR1A DNA MER1_type 62 226 0 4 853 809 145 27 20 chr6 35161133 35161281 -114355756 - B1_Mur3 SINE Alu 0 149 1 4 853 183 42 0 0 chr6 35161479 35161503 -114355534 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 853 1202 41 14 0 chr6 35161646 35161791 -114355246 - B1_Mus1 SINE Alu 0 148 2 4 853 1728 197 78 8 chr6 35161833 35162207 -114354830 - MTD LTR MaLR -19 400 1 4 853 615 262 38 14 chr6 35162444 35162653 -114354384 - B3 SINE B2 0 216 3 4 853 342 318 9 27 chr6 35163839 35163949 -114353088 - PB1D10 SINE Alu -9 108 1 4 853 511 244 86 29 chr6 35164030 35164169 -114352868 - B1F2 SINE Alu 0 149 3 4 853 347 214 190 44 chr6 35166291 35166428 -114350609 + RSINE1 SINE B4 3 159 -6 4 853 720 313 52 28 chr6 35166544 35166869 -114350168 + MER82 DNA MER2_type 29 361 -292 4 853 30 27 0 0 chr6 35166875 35166912 -114350125 + AT_rich Low_complexity Low_complexity 1 37 0 4 853 1131 83 0 0 chr6 35166916 35167061 -114349976 - B1_Mus1 SINE Alu -2 146 2 4 853 22 0 0 0 chr6 35167063 35167085 -114349952 + AT_rich Low_complexity Low_complexity 1 22 0 4 853 1698 238 49 23 chr6 35167101 35167574 -114349463 - RLTR20C LTR ERVK -2 532 48 4 853 561 259 35 7 chr6 35167601 35167745 -114349292 - RSINE1 SINE B4 -15 150 3 4 853 309 267 25 17 chr6 35167760 35167878 -114349159 + MER82 DNA MER2_type 367 485 -168 4 853 1767 134 71 58 chr6 35168231 35168556 -114348481 - ORR1A4 LTR MaLR 0 329 1 4 853 318 132 0 0 chr6 35168583 35168636 -114348401 + (TTCA)n Simple_repeat Simple_repeat 3 55 0 4 853 324 107 0 0 chr6 35168664 35168720 -114348317 - B1_Mur4 SINE Alu 0 150 95 4 853 26 0 0 0 chr6 35168726 35168752 -114348285 + AT_rich Low_complexity Low_complexity 1 26 0 4 853 428 221 0 10 chr6 35169133 35169229 -114347808 - PB1D10 SINE Alu -2 115 21 4 853 735 163 28 29 chr6 35169329 35169490 -114347547 + B2_Mm2 SINE B2 1 170 -46 4 853 273 128 0 0 chr6 35169491 35169538 -114347499 + (CATA)n Simple_repeat Simple_repeat 2 48 0 4 853 182 118 29 0 chr6 35170430 35170464 -114346573 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 853 30 27 0 0 chr6 35170778 35170815 -114346222 + AT_rich Low_complexity Low_complexity 1 37 0 4 853 637 212 66 0 chr6 35170887 35171024 -114346013 - B1_Mus2 SINE Alu 0 147 2 4 853 309 357 39 0 chr6 35171137 35171266 -114345771 - RSINE1 SINE B4 -21 144 11 4 853 270 140 20 0 chr6 35171674 35171724 -114345313 - MTD LTR MaLR 0 419 369 4 853 1147 86 12 0 chr6 35171739 35171901 -114345136 + B2_Mm2 SINE B2 1 164 -31 4 853 1261 221 62 62 chr6 35171898 35172143 -114344894 - MTD LTR MaLR -45 374 134 4 853 1453 59 37 0 chr6 35172143 35172330 -114344707 - B2_Mm2 SINE B2 0 195 2 4 853 1261 221 62 62 chr6 35172330 35172441 -114344596 - MTD LTR MaLR -286 133 18 4 853 255 288 76 9 chr6 35172549 35172654 -114344383 + PB1D10 SINE Alu 1 112 -5 4 853 426 85 0 0 chr6 35172703 35172762 -114344275 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 853 266 283 165 8 chr6 35172782 35172903 -114344134 - B2_Mm2 SINE B2 -55 140 1 4 853 703 161 53 8 chr6 35173151 35173282 -114343755 - B1_Mur1 SINE Alu -1 148 12 4 853 589 294 14 27 chr6 35175378 35175525 -114341512 + RSINE1 SINE B4 21 165 0 4 853 363 78 0 0 chr6 35175541 35175592 -114341445 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 853 23 68 0 0 chr6 35175644 35175688 -114341349 + AT_rich Low_complexity Low_complexity 1 44 0 4 853 946 40 0 0 chr6 35176151 35176275 -114340762 + B1_Mus1 SINE Alu 25 148 0 4 853 198 0 0 0 chr6 35176275 35176297 -114340740 + (A)n Simple_repeat Simple_repeat 1 22 0 4 853 1387 156 45 98 chr6 35176360 35176695 -114340342 - ORR1A4 LTR MaLR -8 321 5 4 853 706 242 7 20 chr6 35176876 35177028 -114340009 - B1_Mur4 SINE Alu 0 150 1 4 853 735 163 0 29 chr6 35177061 35177200 -114339837 - B1_Mus1 SINE Alu -9 139 5 4 853 21 57 0 0 chr6 35178227 35178262 -114338775 + AT_rich Low_complexity Low_complexity 1 35 0 4 853 532 239 107 35 chr6 35178386 35178555 -114338482 + B3A SINE B2 3 183 -15 4 853 1191 48 14 0 chr6 35178829 35178975 -114338062 + B1_Mur4 SINE Alu 3 150 0 4 853 206 118 0 0 chr6 35178975 35179009 -114338028 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 4 853 837 235 35 20 chr6 35179228 35179428 -114337609 - B3 SINE B2 -13 203 1 4 853 746 186 0 46 chr6 35179754 35179906 -114337131 + B1_Mm SINE Alu 2 146 -1 4 853 227 196 0 0 chr6 35179909 35179960 -114337077 + A-rich Low_complexity Low_complexity 1 51 0 4 853 22 0 0 0 chr6 35180071 35180093 -114336944 + AT_rich Low_complexity Low_complexity 1 22 0 4 853 21 36 0 0 chr6 35180106 35180134 -114336903 + AT_rich Low_complexity Low_complexity 1 28 0 4 853 1334 80 23 0 chr6 35180873 35181048 -114335989 + B2_Mm2 SINE B2 3 181 -14 4 853 351 85 209 68 chr6 35181076 35181190 -114335847 + B2_Mm2 SINE B2 47 188 -5 4 853 516 211 38 23 chr6 35181668 35181799 -114335238 + B2_Mm2 SINE B2 1 133 -62 4 853 228 340 10 50 chr6 35181794 35181893 -114335144 + B3A SINE B2 97 191 -7 4 853 1352 68 28 0 chr6 35181979 35182155 -114334882 + B2_Mm1a SINE B2 1 181 -12 4 853 200 59 29 0 chr6 35182155 35182189 -114334848 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 853 412 244 11 32 chr6 35183769 35183862 -114333175 + PB1D10 SINE Alu 4 94 -23 4 853 22 0 0 0 chr6 35184054 35184076 -114332961 + AT_rich Low_complexity Low_complexity 1 22 0 4 853 1373 124 230 16 chr6 35185120 35185424 -114331613 - ORR1D1 LTR MaLR 0 374 6 4 853 227 316 25 42 chr6 35185454 35185573 -114331464 + PB1D10 SINE Alu 1 117 0 4 853 353 309 16 16 chr6 35185577 35185702 -114331335 + ID_B1 SINE B4 100 224 0 4 853 270 95 0 0 chr6 35188307 35188349 -114328688 + (TCC)n Simple_repeat Simple_repeat 2 43 0 4 853 1166 205 5 0 chr6 35188487 35188697 -114328340 - B3 SINE B2 -5 211 1 4 853 322 292 80 0 chr6 35189298 35189435 -114327602 - B1F2 SINE Alu -1 148 1 4 853 215 277 24 12 chr6 35189506 35189590 -114327447 - PB1D10 SINE Alu 0 117 33 4 853 731 52 0 0 chr6 35189792 35189889 -114327148 + B1_Mus1 SINE Alu 40 136 -12 4 853 21 71 0 0 chr6 35190339 35190381 -114326656 + AT_rich Low_complexity Low_complexity 1 42 0 4 853 353 261 174 42 chr6 35190381 35190525 -114326512 - RSINE1 SINE B4 0 165 3 4 853 180 0 0 0 chr6 35191542 35191562 -114325475 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 4 853 1236 50 0 0 chr6 35191566 35191727 -114325310 - B2_Mm2 SINE B2 -31 164 4 4 853 216 241 17 0 chr6 35192357 35192415 -114324622 - B1F SINE Alu 0 149 91 4 853 406 212 352 6 chr6 35192668 35192824 -114324213 + B3 SINE B2 1 210 -6 4 853 2092 160 83 0 chr6 35193039 35193389 -114323648 - Lx5 LINE L1 0 7050 6672 4 853 438 205 34 30 chr6 35193400 35193521 -114323516 - B3 SINE B2 0 198 80 4 853 737 141 47 8 chr6 35193623 35193752 -114323285 + U1 snRNA snRNA 30 163 -2 4 853 354 255 105 29 chr6 35195466 35195571 -114321466 - PB1 SINE Alu -3 124 12 4 853 41 0 0 0 chr6 35196176 35196217 -114320820 + AT_rich Low_complexity Low_complexity 1 41 0 4 853 706 256 28 6 chr6 35196273 35196450 -114320587 - B3A SINE B2 -15 183 3 4 853 910 212 52 11 chr6 35196490 35196681 -114320356 - B3 SINE B2 -9 207 9 4 853 261 235 0 0 chr6 35196912 35196963 -114320074 - ID2 SINE ID -7 76 26 5 853 528 209 20 33 chr6 35196998 35197151 -114319886 + Lx5 LINE L1 6893 7043 -7 5 853 6289 107 81 40 chr6 35197879 35198070 -114318967 + Lx3C LINE L1 5828 6021 -955 5 853 207 0 0 0 chr6 35198070 35198093 -114318944 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 5 853 6289 107 81 40 chr6 35198093 35199005 -114318032 + Lx3C LINE L1 6022 6976 0 5 853 464 247 87 27 chr6 35199504 35199654 -114317383 + RSINE1 SINE B4 3 161 -4 5 853 453 204 114 9 chr6 35199736 35199850 -114317187 - RSINE1 SINE B4 -33 132 7 5 853 670 286 22 39 chr6 35200467 35200649 -114316388 - B4 SINE B4 -2 290 112 5 853 812 37 0 0 chr6 35200658 35200767 -114316270 - B1_Mm SINE Alu -30 117 9 5 853 553 217 0 32 chr6 35200774 35200898 -114316139 - MTA_Mm LTR MaLR -276 120 1 5 853 1376 188 64 73 chr6 35201156 35201305 -114315732 - RMER10A LTR ERVL 0 442 286 5 853 576 0 0 0 chr6 35201305 35201369 -114315668 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 853 1376 188 64 73 chr6 35201369 35201447 -114315590 - RMER10A LTR ERVL -157 285 218 5 853 2168 122 22 0 chr6 35201447 35201768 -114315269 - ORR1A4 LTR MaLR -1 328 1 5 853 1376 188 64 73 chr6 35201768 35201976 -114315061 - RMER10A LTR ERVL -225 217 10 5 853 204 40 0 0 chr6 35202634 35202659 -114314378 + (CGGGG)n Simple_repeat Simple_repeat 4 28 0 5 853 360 273 18 55 chr6 35205169 35205332 -114311705 - RSINE1 SINE B4 -8 157 1 5 853 182 260 56 74 chr6 35205332 35205440 -114311597 + MIR SINE MIR 81 186 -76 5 853 312 283 78 82 chr6 35205560 35205791 -114311246 + MER2 DNA MER2_type 1 230 -115 5 853 856 235 19 24 chr6 35206298 35206507 -114310530 + B3 SINE B2 3 210 -6 5 853 22 35 0 0 chr6 35206657 35206686 -114310351 + AT_rich Low_complexity Low_complexity 1 29 0 5 853 472 250 97 0 chr6 35206686 35206830 -114310207 - B3A SINE B2 -39 159 2 5 853 265 47 0 44 chr6 35207317 35207362 -114309675 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 5 853 393 292 92 19 chr6 35207450 35207656 -114309381 - L1MB8 LINE L1 -140 6038 5818 5 853 521 287 164 31 chr6 35207689 35208218 -114308819 - L1MB8 LINE L1 -438 5740 5151 5 853 183 80 0 0 chr6 35209079 35209104 -114307933 + (TGG)n Simple_repeat Simple_repeat 1 25 0 5 853 567 200 124 68 chr6 35209109 35209270 -114307767 - B3A SINE B2 -46 170 1 5 853 318 237 81 94 chr6 35209907 35210056 -114306981 - B1F2 SINE Alu -2 147 1 5 853 259 65 21 21 chr6 35212069 35212116 -114304921 + (CCCCCA)n Simple_repeat Simple_repeat 2 48 0 5 853 579 200 33 0 chr6 35212170 35212290 -114304747 - PB1 SINE Alu -2 125 2 5 853 30 0 0 0 chr6 35212303 35212333 -114304704 + AT_rich Low_complexity Low_complexity 1 30 0 5 853 426 39 0 0 chr6 35212487 35212539 -114304498 + (CATA)n Simple_repeat Simple_repeat 3 54 0 5 853 380 227 0 53 chr6 35212635 35212730 -114304307 - ID_B1 SINE B4 -58 166 81 5 853 794 140 80 7 chr6 35212757 35212894 -114304143 - B1_Mur3 SINE Alu -2 147 1 5 853 303 271 75 0 chr6 35213641 35213748 -114303289 + MARNA DNA Mariner 280 394 -192 5 853 782 214 29 59 chr6 35213875 35214079 -114302958 - B3A SINE B2 0 198 1 5 853 553 149 168 42 chr6 35214735 35214854 -114302183 - B1_Mus1 SINE Alu -13 135 2 5 853 739 172 8 0 chr6 35214983 35215111 -114301926 - B3 SINE B2 -86 130 2 5 853 201 263 0 0 chr6 35215272 35215329 -114301708 + T-rich Low_complexity Low_complexity 1 57 0 5 853 1093 69 14 14 chr6 35215330 35215477 -114301560 - B1_Mus1 SINE Alu -1 147 1 5 853 426 289 26 0 chr6 35216270 35216384 -114300653 - MER2 DNA MER2_type -8 337 221 5 853 1362 238 73 27 chr6 35216474 35216845 -114300192 - MTD LTR MaLR -14 405 18 5 853 666 203 0 83 chr6 35220888 35221044 -114295993 + B1_Mus2 SINE Alu 5 147 0 5 853 207 0 0 0 chr6 35221044 35221067 -114295970 + (A)n Simple_repeat Simple_repeat 1 23 0 5 853 21 36 0 0 chr6 35222802 35222830 -114294207 + AT_rich Low_complexity Low_complexity 1 28 0 5 853 1367 56 82 16 chr6 35222976 35223136 -114293901 + B2_Mm2 SINE B2 1 160 -35 5 853 315 0 0 0 chr6 35223136 35223171 -114293866 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 853 1367 56 82 16 chr6 35223171 35223192 -114293845 + B2_Mm2 SINE B2 161 193 -2 5 853 228 67 0 0 chr6 35223240 35223270 -114293767 + (A)n Simple_repeat Simple_repeat 1 30 0 5 853 207 333 107 78 chr6 35223279 35223653 -114293384 + L3 LINE CR1 3694 4078 -411 5 853 847 226 91 0 chr6 35223962 35224148 -114292889 + B3 SINE B2 1 203 -13 5 853 1643 37 0 0 chr6 35224657 35224848 -114292189 - B2_Mm1t SINE B2 0 193 3 5 853 1090 189 15 19 chr6 35225086 35225291 -114291746 - URR1A DNA MER1_type -1 225 22 5 853 283 285 77 42 chr6 35226200 35226343 -114290694 - MIRb SINE MIR -119 149 2 5 853 305 294 106 11 chr6 35226994 35227173 -114289864 + L1ME4a LINE L1 5771 5966 -158 5 853 237 211 0 0 chr6 35227174 35227226 -114289811 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 5 853 324 286 0 13 chr6 35227243 35227321 -114289716 - ID4 SINE ID -6 77 1 5 853 262 250 43 29 chr6 35227343 35227413 -114289624 - PB1D10 SINE Alu -26 91 21 5 853 431 78 16 0 chr6 35227432 35227496 -114289541 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 853 259 243 0 0 chr6 35227648 35227718 -114289319 + T-rich Low_complexity Low_complexity 1 70 0 5 853 25 0 0 0 chr6 35228494 35228519 -114288518 + GC_rich Low_complexity Low_complexity 1 25 0 5 853 347 305 199 32 chr6 35228915 35229196 -114287841 + MamRep434 DNA TcMar 90 417 -9 5 853 219 167 0 0 chr6 35229711 35229753 -114287284 + CT-rich Low_complexity Low_complexity 2 43 0 5 853 937 215 30 10 chr6 35230786 35230983 -114286054 + B3 SINE B2 14 214 -2 5 853 448 265 90 15 chr6 35231028 35231162 -114285875 - ID_B1 SINE B4 0 224 81 5 853 762 256 63 10 chr6 35231287 35231492 -114285545 - B3 SINE B2 0 216 1 5 853 359 259 0 0 chr6 35231559 35231640 -114285397 + ID4 SINE ID 2 82 -1 5 853 468 277 41 16 chr6 35231955 35232076 -114284961 - ID_B1 SINE B4 -20 204 81 5 853 185 374 79 24 chr6 35232452 35232578 -114284459 + MIRb SINE MIR 134 266 -2 5 853 789 173 8 0 chr6 35232769 35232896 -114284141 + RSINE1 SINE B4 2 129 -36 5 853 360 0 0 0 chr6 35232926 35232966 -114284071 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 853 317 258 56 93 chr6 35233635 35233742 -114283295 + B3A SINE B2 101 203 -13 5 853 783 207 0 0 chr6 35233746 35234106 -114282931 + (CA)n Simple_repeat Simple_repeat 1 360 0 5 853 348 181 79 79 chr6 35234124 35234238 -114282799 + HAL1-3A_ME LINE L1 1975 2088 -770 5 853 191 288 25 76 chr6 35235302 35235381 -114281656 + L2b LINE L2 3204 3278 -97 5 853 1297 87 0 6 chr6 35236563 35236737 -114280300 + B2_Mm2 SINE B2 1 173 -22 5 853 440 86 29 2 chr6 35236765 35236869 -114280168 + B2_Mm2 SINE B2 47 189 -6 5 853 276 77 0 0 chr6 35236906 35236945 -114280092 + (TATG)n Simple_repeat Simple_repeat 3 41 0 5 853 195 42 0 0 chr6 35238386 35238410 -114278627 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 853 274 235 22 0 chr6 35240056 35240132 -114276905 - ID4 SINE ID -63 89 12 5 853 848 173 0 0 chr6 35240161 35240300 -114276737 + B1_Mus1 SINE Alu 2 140 -8 5 853 553 295 60 64 chr6 35241117 35241399 -114275638 + B4A SINE B4 1 281 -11 5 853 1086 128 0 0 chr6 35241669 35241841 -114275196 + (GAA)n Simple_repeat Simple_repeat 1 172 0 5 853 228 210 198 0 chr6 35242638 35242719 -114274318 - MIR SINE MIR -121 141 45 5 853 2139 142 86 16 chr6 35243494 35243880 -114273157 + RMER4B LTR ERVK 1 413 -172 5 853 804 299 101 7 chr6 35244734 35245010 -114272027 + Tigger7 DNA MER2_type 9 310 -2181 5 853 265 329 25 0 chr6 35245110 35245189 -114271848 + Tigger7 DNA MER2_type 2398 2478 -13 5 853 21 36 0 0 chr6 35245230 35245258 -114271779 + AT_rich Low_complexity Low_complexity 1 28 0 5 853 349 380 50 72 chr6 35245521 35245742 -114271295 - B4A SINE B4 -62 230 15 5 853 371 274 0 0 chr6 35245751 35245824 -114271213 + RMER30 DNA MER1_type 129 201 -1 5 853 331 273 125 0 chr6 35246214 35246302 -114270735 + PB1D10 SINE Alu 1 99 -18 5 853 882 207 15 74 chr6 35246409 35246612 -114270425 + B3A SINE B2 4 194 -4 5 853 294 220 82 35 chr6 35247583 35247668 -114269369 + PB1D10 SINE Alu 22 110 -7 5 853 195 278 175 42 chr6 35247671 35247791 -114269246 - L3 LINE CR1 -5 4484 4349 5 853 655 314 52 22 chr6 35248064 35248295 -114268742 + MIRb SINE MIR 5 242 -26 5 853 380 317 45 100 chr6 35248310 35248601 -114268436 + MLT2B1 LTR ERVL 246 520 0 5 853 342 0 0 0 chr6 35249739 35249777 -114267260 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 853 1069 208 112 26 chr6 35250005 35250295 -114266742 + Lx5 LINE L1 6712 7030 -20 5 853 414 0 0 0 chr6 35250295 35250341 -114266696 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 5 853 1069 208 112 26 chr6 35250341 35250361 -114266676 + Lx5 LINE L1 7031 7049 -1 5 853 278 84 41 27 chr6 35250881 35250954 -114266083 + (TTTG)n Simple_repeat Simple_repeat 4 77 0 5 853 841 211 0 0 chr6 35251321 35251463 -114265574 + B1_Mur1 SINE Alu 8 149 0 5 853 230 205 192 0 chr6 35251509 35251587 -114265450 - L2c LINE L2 -228 3159 3067 5 853 188 34 0 33 chr6 35252669 35252699 -114264338 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 853 531 222 34 17 chr6 35252701 35252820 -114264217 - PB1 SINE Alu -6 121 1 5 853 744 49 63 0 chr6 35254484 35254627 -114262410 + (TG)n Simple_repeat Simple_repeat 1 152 0 5 853 324 232 27 34 chr6 35254729 35254842 -114262195 + PB1D10 SINE Alu 43 147 -2 5 853 293 268 0 68 chr6 35255092 35255180 -114261857 - ID4 SINE ID 0 83 2 6 853 2946 68 5 3 chr6 35255625 35256010 -114261027 + L1_Mus4 LINE L1 6234 6619 -17 6 853 320 0 25 0 chr6 35256010 35256050 -114260987 + (TAA)n Simple_repeat Simple_repeat 3 43 0 6 853 186 103 0 0 chr6 35256351 35256380 -114260657 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 6 853 1393 114 22 13 chr6 35256656 35256887 -114260150 - Lx LINE L1 -1 6653 6421 6 853 306 0 0 0 chr6 35257838 35257872 -114259165 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 854 417 39 0 0 chr6 35258861 35258912 -114258125 + (TTTC)n Simple_repeat Simple_repeat 3 53 0 6 854 1180 82 0 0 chr6 35258919 35259065 -114257972 - B1_Mm SINE Alu 0 147 2 6 854 418 254 70 23 chr6 35259874 35260003 -114257034 - ID_B1 SINE B4 -4 220 86 6 854 592 237 0 0 chr6 35259889 35260007 -114257030 - B1F SINE Alu -31 118 1 6 854 309 289 0 0 chr6 35260145 35260221 -114256816 + ID4 SINE ID 2 77 -6 6 854 324 0 0 0 chr6 35260251 35260287 -114256750 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 854 333 118 0 0 chr6 35261056 35261107 -114255930 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 854 922 244 99 12 chr6 35261603 35261856 -114255181 + B4A SINE B4 6 280 -12 6 854 189 0 0 0 chr6 35263891 35263912 -114253125 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 854 265 359 23 18 chr6 35264044 35264156 -114252881 + MIRb SINE MIR 107 227 -41 6 854 1034 209 59 76 chr6 35266607 35266897 -114250140 - B4A SINE B4 0 292 8 6 854 235 236 104 69 chr6 35267077 35267250 -114249787 - Lx9 LINE L1 -47 7597 7419 6 854 993 289 50 35 chr6 35267260 35267683 -114249354 - Lx9 LINE L1 -127 7517 6957 6 854 272 91 23 0 chr6 35267683 35267727 -114249310 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 854 1187 270 61 15 chr6 35267727 35268125 -114248912 - Lx9 LINE L1 -517 6956 6424 6 854 306 50 0 0 chr6 35268726 35268766 -114248271 + (CTTG)n Simple_repeat Simple_repeat 2 41 0 6 854 608 145 81 9 chr6 35269437 35269548 -114247489 - RSINE1 SINE B4 -36 129 11 6 854 203 304 120 0 chr6 35269781 35269873 -114247164 + L2c LINE L2 1657 1759 -1660 6 854 414 0 0 0 chr6 35270186 35270232 -114246805 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 854 306 392 122 20 chr6 35270287 35270560 -114246477 + L2c LINE L2 2576 2878 -541 6 854 306 0 0 0 chr6 35270560 35270594 -114246443 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 6 854 363 331 86 52 chr6 35270594 35271078 -114245959 + L2c LINE L2 2879 3387 0 6 854 287 258 44 29 chr6 35272147 35272215 -114244822 + RSINE1 SINE B4 97 165 0 6 854 7181 1 0 0 chr6 35272339 35273114 -114243923 + L1Md_A LINE L1 5808 6582 0 6 854 818 240 45 133 chr6 35273606 35273639 -114243398 - B4 SINE B4 -1 291 265 6 854 306 0 0 0 chr6 35273639 35273673 -114243364 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 854 818 240 45 133 chr6 35273673 35273947 -114243090 - B4 SINE B4 -28 264 11 6 854 405 86 0 0 chr6 35274684 35274742 -114242295 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 854 694 254 184 26 chr6 35277149 35277383 -114239654 + B4A SINE B4 8 278 -14 6 854 269 238 213 8 chr6 35277775 35277902 -114239135 - MER33 DNA MER1_type -32 292 140 6 854 423 0 0 0 chr6 35277904 35277951 -114239086 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 854 342 351 63 11 chr6 35278740 35278930 -114238107 + MIR SINE MIR 31 230 -32 6 854 359 264 114 72 chr6 35279142 35279309 -114237728 - MER63A DNA AcHobo -36 174 1 6 854 232 195 18 223 chr6 35279500 35279612 -114237425 - MER101B LTR ERV1 -197 373 285 6 854 279 213 154 39 chr6 35280599 35280677 -114236360 + MLT1J2 LTR MaLR 360 446 -2 6 854 243 133 0 0 chr6 35280684 35280729 -114236308 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 6 854 1337 260 77 55 chr6 35281961 35282149 -114234888 - MTEa LTR MaLR 0 379 175 6 854 827 207 67 48 chr6 35282149 35282357 -114234680 - B3 SINE B2 0 216 5 6 854 1337 260 77 55 chr6 35282357 35282534 -114234503 - MTEa LTR MaLR -205 174 6 6 854 304 229 0 14 chr6 35282945 35283016 -114234021 - MLT1A1 LTR MaLR -3 405 336 6 854 265 292 18 138 chr6 35283012 35283179 -114233858 + MT2B2 LTR ERVL 119 265 -319 6 854 810 151 24 0 chr6 35283073 35283199 -114233838 + B1_Mur4 SINE Alu 9 137 -13 6 854 415 0 0 35 chr6 35283201 35283258 -114233779 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 6 854 261 0 0 0 chr6 35283573 35283602 -114233435 + (T)n Simple_repeat Simple_repeat 1 29 0 6 854 245 279 13 0 chr6 35284029 35284108 -114232929 + L1M5 LINE L1 5715 5794 -368 6 854 255 188 62 0 chr6 35284350 35284398 -114232639 + L1ME3 LINE L1 6073 6123 -39 6 854 346 310 55 39 chr6 35284439 35284594 -114232443 + B3A SINE B2 59 216 0 6 854 213 288 119 8 chr6 35285712 35285838 -114231199 - MIR3 SINE MIR -9 199 60 6 854 588 287 86 10 chr6 35285920 35286117 -114230920 - MER20 DNA MER1_type 0 219 8 6 854 212 180 0 57 chr6 35286262 35286315 -114230722 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 6 854 25 0 0 0 chr6 35286859 35286884 -114230153 + AT_rich Low_complexity Low_complexity 1 25 0 6 854 21 82 0 0 chr6 35287044 35287093 -114229944 + AT_rich Low_complexity Low_complexity 1 49 0 6 854 22 0 0 0 chr6 35287114 35287136 -114229901 + AT_rich Low_complexity Low_complexity 1 22 0 6 854 2776 131 12 17 chr6 35287289 35287710 -114229327 + MTC LTR MaLR 3 421 0 6 854 406 331 83 28 chr6 35288341 35288521 -114228516 + MER53 DNA hAT 3 192 -1 6 854 39744 60 1 23 chr6 35289468 35296397 -114220640 - L1Md_T LINE L1 0 6582 99 6 854 2416 215 8 20 chr6 35296411 35297418 -114219619 - L1Md_F LINE L1 -5923 596 2 6 854 979 269 9 0 chr6 35297427 35297650 -114219387 + MER2 DNA MER2_type 116 340 -5 6 854 562 302 149 12 chr6 35298061 35298316 -114218721 - MLT2B4 LTR ERVL -189 367 78 6 854 214 132 0 70 chr6 35298363 35298405 -114218632 + T-rich Low_complexity Low_complexity 15 53 0 6 854 1227 48 0 0 chr6 35298405 35298551 -114218486 - B1_Mus2 SINE Alu 0 147 2 6 854 214 132 0 70 chr6 35298551 35298565 -114218472 + T-rich Low_complexity Low_complexity 1 14 0 6 854 876 224 89 99 chr6 35299123 35299394 -114217643 + B4A SINE B4 4 276 -16 6 854 411 83 0 0 chr6 35299394 35299454 -114217583 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 854 876 224 89 99 chr6 35299454 35299474 -114217563 + B4A SINE B4 277 292 0 6 854 730 161 18 0 chr6 35299479 35299706 -114217331 + GA-rich Low_complexity Low_complexity 1 231 0 6 854 393 358 8 0 chr6 35301477 35301611 -114215426 - ID_B1 SINE B4 -7 217 83 6 854 567 0 0 0 chr6 35301648 35301711 -114215326 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 6 854 735 82 0 0 chr6 35301711 35301808 -114215229 - B1_Mus2 SINE Alu -10 137 41 6 854 562 329 112 13 chr6 35302030 35302307 -114214730 + MLT1H1 LTR MaLR 39 359 -232 6 854 673 233 14 14 chr6 35302311 35302459 -114214578 + B1_Mur3 SINE Alu 2 149 0 6 854 915 154 14 7 chr6 35302487 35302631 -114214406 + B1_Mur4 SINE Alu 6 150 0 6 854 578 247 51 90 chr6 35302491 35302669 -114214368 + B4 SINE B4 94 264 -28 6 854 499 256 68 84 chr6 35302629 35302840 -114214197 + MLT1H1 LTR MaLR 326 622 -5 6 854 304 343 42 35 chr6 35303429 35303571 -114213466 + MER45A DNA Tip100 36 178 0 6 854 210 71 0 0 chr6 35303650 35303678 -114213359 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 6 854 497 318 62 28 chr6 35304302 35304480 -114212557 + MER5A DNA MER1_type 3 186 -3 6 854 230 167 77 77 chr6 35305350 35305415 -114211622 - YREP_Mm Unknown Unknown -1497 315 251 6 854 371 209 154 0 chr6 35305360 35305451 -114211586 + PB1D10 SINE Alu 13 117 0 6 854 410 281 16 62 chr6 35305460 35305553 -114211484 + ID_B1 SINE B4 3 95 -129 6 854 1579 173 171 11 chr6 35305553 35305904 -114211133 - MTB_Mm LTR MaLR 0 407 1 6 854 410 281 16 62 chr6 35305904 35305939 -114211098 + ID_B1 SINE B4 96 125 -99 6 854 561 316 87 17 chr6 35305935 35306176 -114210861 - B4A SINE B4 -29 263 6 6 854 261 0 0 0 chr6 35306243 35306272 -114210765 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 6 854 2347 75 24 59 chr6 35306439 35306778 -114210259 + ORR1A2 LTR MaLR 1 327 0 6 854 610 305 60 138 chr6 35306925 35307424 -114209613 + LTR37B LTR ERV1 6 465 -3 6 854 1199 51 13 0 chr6 35307487 35307645 -114209392 + (TTCC)n Simple_repeat Simple_repeat 3 162 0 6 854 367 299 47 101 chr6 35307833 35307982 -114209055 - B1F SINE Alu -6 143 3 6 854 665 231 187 20 chr6 35308078 35308365 -114208672 - MTEa LTR MaLR -3 376 3 6 854 321 336 45 20 chr6 35308376 35308622 -114208415 - L1MEg LINE L1 -4840 1244 993 6 854 762 190 196 27 chr6 35308631 35308797 -114208240 + B3 SINE B2 2 203 -13 6 854 210 37 0 0 chr6 35308797 35308824 -114208213 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 854 762 190 196 27 chr6 35308824 35308841 -114208196 + B3 SINE B2 204 216 0 6 854 2027 147 75 0 chr6 35309092 35309426 -114207611 + ORR1B2 LTR MaLR 1 359 -8 6 854 403 298 52 17 chr6 35309566 35309606 -114207431 + B3A SINE B2 1 40 -158 6 854 1183 112 202 0 chr6 35309606 35309794 -114207243 + URR1A DNA MER1_type 1 226 0 6 854 403 299 60 44 chr6 35309794 35309920 -114207117 + B3A SINE B2 41 165 -30 6 854 473 306 180 57 chr6 35309925 35310420 -114206617 - L1MD LINE L1 -1823 4323 3768 6 854 219 326 0 20 chr6 35310421 35310521 -114206516 + (TA)n Simple_repeat Simple_repeat 1 98 0 6 854 337 304 0 115 chr6 35310544 35310674 -114206363 - B1F SINE Alu -7 142 28 6 854 309 321 115 27 chr6 35310674 35311276 -114205761 - L1M5 LINE L1 -2389 3757 3103 6 854 241 212 29 29 chr6 35311318 35311386 -114205651 - B3A SINE B2 0 198 131 6 854 423 266 0 7 chr6 35311539 35311679 -114205358 + L1M5 LINE L1 4570 4708 -1438 6 854 874 179 20 7 chr6 35311729 35311875 -114205162 + B1_Mur3 SINE Alu 2 149 0 6 854 300 278 85 31 chr6 35312023 35312153 -114204884 + L1M5 LINE L1 4930 5066 -1080 6 854 428 91 0 15 chr6 35313486 35313553 -114203484 + (TTA)n Simple_repeat Simple_repeat 1 66 0 7 854 222 316 60 67 chr6 35314453 35314602 -114202435 - L2b LINE L2 -3 3372 3225 7 854 1897 245 7 7 chr6 35314764 35315184 -114201853 - MTC LTR MaLR -1 420 1 7 854 954 246 151 30 chr6 35315923 35316254 -114200783 + MTEa LTR MaLR 8 378 -1 7 854 285 397 0 8 chr6 35316517 35316644 -114200393 + (CACG)n Simple_repeat Simple_repeat 1 126 0 7 854 701 259 25 0 chr6 35316661 35316819 -114200218 + RSINE1 SINE B4 2 163 -2 7 854 546 275 14 21 chr6 35317027 35317168 -114199869 + B1F SINE Alu 1 140 -9 7 854 650 172 8 0 chr6 35317674 35317802 -114199235 + CT-rich Low_complexity Low_complexity 2 130 0 7 854 411 83 0 0 chr6 35317943 35318003 -114199034 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 854 514 296 56 0 chr6 35318003 35318117 -114198920 - RSINE1 SINE B4 -41 124 4 7 854 241 317 89 27 chr6 35318181 35318327 -114198710 - L1M5 LINE L1 -1232 4914 4760 7 854 366 108 141 51 chr6 35318342 35318420 -114198617 + L1_Mur2 LINE L1 179 263 -6449 7 854 3772 98 40 2 chr6 35318433 35318952 -114198085 + Lx4A LINE L1 6520 7058 0 7 854 411 21 0 0 chr6 35320231 35320279 -114196758 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 854 1305 79 85 0 chr6 35321116 35321132 -114195905 - B2_Mm1t SINE B2 -1 192 177 7 854 207 0 0 0 chr6 35321132 35321155 -114195882 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 854 1305 79 85 0 chr6 35321155 35321315 -114195722 - B2_Mm1t SINE B2 -17 176 2 7 854 22 0 0 0 chr6 35321446 35321468 -114195569 + AT_rich Low_complexity Low_complexity 1 22 0 7 854 242 264 85 32 chr6 35321904 35321998 -114195039 - L1M2 LINE L1 -488 5812 5714 7 854 225 194 0 0 chr6 35322289 35322325 -114194712 - 5S rRNA rRNA -79 42 7 7 854 813 220 129 0 chr6 35322849 35323035 -114194002 + B3 SINE B2 2 211 -5 7 854 26 0 0 0 chr6 35323171 35323197 -114193840 + AT_rich Low_complexity Low_complexity 1 26 0 7 854 333 47 0 0 chr6 35323441 35323484 -114193553 + (TCTG)n Simple_repeat Simple_repeat 1 43 0 7 854 1372 285 53 3 chr6 35323775 35324134 -114192903 - MTEb LTR MaLR -2 377 1 7 854 645 292 62 17 chr6 35324439 35324679 -114192358 - MER2 DNA MER2_type -2 343 93 7 854 279 0 0 0 chr6 35324698 35324729 -114192308 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 7 854 530 206 9 0 chr6 35324729 35324836 -114192201 - PB1D9 SINE Alu -10 110 3 7 854 647 296 45 32 chr6 35324856 35325076 -114191961 - B4A SINE B4 -67 225 3 7 854 528 257 50 22 chr6 35325342 35325481 -114191556 - MLT1B LTR MaLR 0 390 248 7 854 637 261 40 69 chr6 35325496 35325698 -114191339 - MLT1B LTR MaLR -192 198 3 7 854 432 0 0 0 chr6 35325765 35325813 -114191224 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 854 561 316 64 14 chr6 35325881 35326099 -114190938 - Lx8 LINE L1 -349 7124 6896 7 854 27 0 0 0 chr6 35326228 35326255 -114190782 + AT_rich Low_complexity Low_complexity 1 27 0 7 854 831 239 32 43 chr6 35327601 35327789 -114189248 + B3 SINE B2 6 191 -25 7 854 212 0 36 0 chr6 35327790 35327818 -114189219 + (CATA)n Simple_repeat Simple_repeat 3 31 0 7 854 28 0 0 0 chr6 35327819 35327847 -114189190 + AT_rich Low_complexity Low_complexity 1 28 0 7 854 312 145 0 42 chr6 35327957 35328029 -114189008 - L1Md_F3 LINE L1 0 6584 6516 7 854 259 224 89 38 chr6 35329731 35329810 -114187227 + ID4_ SINE ID 1 83 0 7 854 281 155 0 17 chr6 35330332 35330391 -114186646 + (TTA)n Simple_repeat Simple_repeat 2 59 0 7 854 231 36 0 0 chr6 35330391 35330419 -114186618 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 854 837 170 130 7 chr6 35330421 35330575 -114186462 - B3 SINE B2 -25 191 19 7 854 2277 170 49 24 chr6 35330627 35331079 -114185958 + Lx3C LINE L1 6512 6974 -2 7 854 276 342 0 26 chr6 35333118 35333232 -114183805 - PB1D10 SINE Alu -5 112 2 7 854 1003 144 207 5 chr6 35333856 35334044 -114182993 - URR1A DNA MER1_type 0 226 1 7 854 324 0 0 0 chr6 35334463 35334499 -114182538 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 854 1255 132 6 0 chr6 35334564 35334746 -114182291 + B2_Mm1t SINE B2 2 184 -9 7 854 414 93 324 27 chr6 35334807 35334918 -114182119 + B2_Mm2 SINE B2 47 190 -5 7 854 552 283 101 37 chr6 35335140 35335465 -114181572 - MLT1A0 LTR MaLR -2 465 23 7 854 302 174 29 0 chr6 35335465 35335534 -114181503 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 7 854 23 33 0 0 chr6 35335967 35335997 -114181040 + AT_rich Low_complexity Low_complexity 1 30 0 7 854 1025 234 20 0 chr6 35336015 35336216 -114180821 - B3 SINE B2 -9 207 3 7 854 356 297 9 38 chr6 35336549 35336654 -114180383 + PB1D10 SINE Alu 3 104 -13 7 854 1420 27 0 23 chr6 35337604 35337825 -114179212 + (CA)n Simple_repeat Simple_repeat 1 216 0 7 854 462 314 15 87 chr6 35337881 35338087 -114178950 + MTEa LTR MaLR 1 191 -188 7 854 416 359 76 82 chr6 35338087 35338396 -114178641 + MLT2B3 LTR ERVL 1 512 -42 7 854 645 14 0 0 chr6 35338540 35338614 -114178423 + (CA)n Simple_repeat Simple_repeat 2 75 0 7 854 38781 29 0 0 chr6 35339373 35345812 -114171225 - L1Md_T LINE L1 0 6585 50 7 854 268 336 16 39 chr6 35346627 35346754 -114170283 + B4 SINE B4 71 194 -98 7 854 992 237 116 6 chr6 35346755 35347074 -114169963 - MTE2a LTR MaLR 0 379 26 7 854 267 329 51 0 chr6 35347072 35347151 -114169886 + B4 SINE B4 192 274 -18 7 854 396 0 0 0 chr6 35347181 35347225 -114169812 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 854 241 313 105 38 chr6 35348155 35348288 -114168749 - MLT2B1 LTR ERVL -6 556 415 7 854 379 228 19 19 chr6 35348423 35348526 -114168511 - PB1 SINE Alu 0 127 25 7 854 365 292 98 12 chr6 35348551 35348714 -114168323 - MLT2B1 LTR ERVL -338 182 6 7 854 975 294 113 36 chr6 35349269 35349826 -114167211 + MLT1E2 LTR MaLR 19 618 -9 7 854 1166 211 105 10 chr6 35350383 35350689 -114166348 - MTE2b LTR MaLR 0 379 45 7 854 256 254 14 0 chr6 35351105 35351176 -114165861 + (CACCAT)n Simple_repeat Simple_repeat 6 77 0 7 854 468 51 0 0 chr6 35351746 35351805 -114165232 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 854 195 317 97 8 chr6 35353582 35353706 -114163331 - MER5A DNA MER1_type -54 135 1 7 854 369 0 0 0 chr6 35354127 35354168 -114162869 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 854 35 41 0 0 chr6 35355544 35355593 -114161444 + AT_rich Low_complexity Low_complexity 1 49 0 7 854 1042 248 152 39 chr6 35355736 35356097 -114160940 + MTD LTR MaLR 1 402 -17 7 854 246 239 36 36 chr6 35356351 35356516 -114160521 + (TTATA)n Simple_repeat Simple_repeat 2 166 0 7 854 202 118 77 19 chr6 35356584 35356636 -114160401 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 7 854 1395 259 152 20 chr6 35356675 35357346 -114159691 - L1M2 LINE L1 -600 5280 4524 7 854 4453 148 62 4 chr6 35358197 35359017 -114158020 - MTC-int LTR MaLR -388 870 3 7 854 2455 132 9 95 chr6 35359017 35359478 -114157559 - MTC LTR MaLR 0 421 1 7 854 192 125 0 0 chr6 35359659 35359691 -114157346 + (CAA)n Simple_repeat Simple_repeat 2 33 0 7 854 401 287 123 36 chr6 35360755 35360950 -114156087 - MER2 DNA MER2_type -8 337 126 7 854 620 279 111 80 chr6 35361259 35361684 -114155353 - L1MA9 LINE L1 -81 6231 5794 7 854 410 0 0 20 chr6 35362703 35362754 -114154283 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 7 854 697 216 6 43 chr6 35362908 35363072 -114153965 + B3A SINE B2 2 159 -39 7 854 352 0 42 0 chr6 35363083 35363131 -114153906 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 854 306 0 0 0 chr6 35363131 35363164 -114153873 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 854 40 37 0 0 chr6 35363208 35363262 -114153775 + AT_rich Low_complexity Low_complexity 1 54 0 7 854 2728 273 114 35 chr6 35363375 35363407 -114153630 - Lx9 LINE L1 -174 7470 7420 7 854 405 0 0 0 chr6 35363407 35363452 -114153585 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 854 2728 274 114 36 chr6 35363452 35364448 -114152589 - Lx9 LINE L1 -225 7419 6211 7 854 342 0 0 0 chr6 35364448 35364486 -114152551 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 854 1439 346 124 50 chr6 35364486 35364969 -114152068 - Lx9 LINE L1 -1263 6210 5704 7 854 263 132 38 0 chr6 35364969 35365022 -114152015 + L1_Rod LINE L1 4710 4764 -1083 7 854 3165 211 50 33 chr6 35365034 35365856 -114151181 - Lx9 LINE L1 -425 5422 4587 7 854 418 242 0 29 chr6 35365942 35366044 -114150993 + ID_B1 SINE B4 125 223 -1 7 854 877 216 53 24 chr6 35367072 35367281 -114149756 + ID_B1 SINE B4 7 221 -3 7 854 280 330 57 33 chr6 35367303 35367425 -114149612 + MER5A DNA MER1_type 42 166 0 7 854 236 243 28 14 chr6 35367458 35367529 -114149508 - MTE2a LTR MaLR -20 359 288 7 854 229 341 0 65 chr6 35367585 35367723 -114149314 - MTE2a LTR MaLR -165 194 66 7 854 405 0 0 0 chr6 35368521 35368566 -114148471 + (TTA)n Simple_repeat Simple_repeat 2 46 0 7 854 296 303 9 35 chr6 35368572 35368685 -114148352 + MLT1B LTR MaLR 1 110 -280 7 854 227 289 69 63 chr6 35368964 35369123 -114147914 + MER5B DNA MER1_type 5 164 -14 7 854 792 32 0 0 chr6 35369256 35369351 -114147686 + (TA)n Simple_repeat Simple_repeat 1 95 0 7 854 344 202 10 21 chr6 35369529 35369625 -114147412 - Lx6 LINE L1 -2 7458 7364 7 854 476 236 64 0 chr6 35369662 35369772 -114147265 + B1_Mur3 SINE Alu 1 117 -32 7 854 467 17 17 0 chr6 35369789 35369849 -114147188 + (CAA)n Simple_repeat Simple_repeat 1 61 0 7 854 599 147 45 106 chr6 35369870 35370068 -114146969 - Lx7 LINE L1 -155 7541 7356 7 854 369 259 49 35 chr6 35370099 35370243 -114146794 - Lx7 LINE L1 -282 7414 7269 7 854 864 236 9 19 chr6 35370272 35370484 -114146553 - B3 SINE B2 -5 211 2 7 854 579 271 38 11 chr6 35370487 35370670 -114146367 + B4A SINE B4 102 289 -3 7 854 208 293 0 0 chr6 35370673 35370731 -114146306 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 854 232 181 0 40 chr6 35370733 35370808 -114146229 + (CAAT)n Simple_repeat Simple_repeat 3 74 0 8 854 261 289 97 92 chr6 35371153 35371370 -114145667 + RMER2 LTR ERV1 334 551 -16 8 854 935 259 14 9 chr6 35372004 35372222 -114144815 - ID_B1 SINE B4 -2 222 4 8 854 21 0 0 0 chr6 35372919 35372940 -114144097 + AT_rich Low_complexity Low_complexity 1 21 0 8 854 871 158 0 0 chr6 35372940 35373104 -114143933 - L1_Mus4 LINE L1 0 6636 6473 8 854 301 306 64 50 chr6 35373728 35373869 -114143168 - MLT2B2 LTR ERVL -10 557 415 8 854 505 349 40 66 chr6 35373855 35374156 -114142881 - MLT2B2 LTR ERVL -215 300 8 8 854 195 69 0 0 chr6 35374156 35374185 -114142852 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 854 1143 43 0 7 chr6 35374185 35374324 -114142713 - B1_Mm SINE Alu -9 138 1 8 854 21 36 0 0 chr6 35375420 35375448 -114141589 + AT_rich Low_complexity Low_complexity 1 28 0 8 854 1086 116 0 0 chr6 35375448 35375595 -114141442 - B1_Mus1 SINE Alu -1 147 1 8 854 729 221 11 51 chr6 35375638 35375814 -114141223 - B3 SINE B2 -47 169 1 8 854 392 273 36 161 chr6 35376126 35376213 -114140824 + MER20 DNA MER1_type 1 56 -163 8 854 278 250 16 0 chr6 35376213 35376277 -114140760 - ID4 SINE ID -17 66 2 8 854 392 273 36 161 chr6 35376277 35376412 -114140625 + MER20 DNA MER1_type 57 195 -24 8 854 192 363 26 17 chr6 35376429 35376544 -114140493 - L2b LINE L2 -341 3034 2919 8 854 378 57 0 0 chr6 35376921 35376974 -114140063 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 854 299 230 99 140 chr6 35376975 35377002 -114140035 - PB1D9 SINE Alu -23 126 91 8 854 405 0 0 0 chr6 35377002 35377047 -114139990 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 854 299 253 30 59 chr6 35377047 35377140 -114139897 - PB1D9 SINE Alu -28 92 3 8 854 567 288 18 30 chr6 35377170 35377335 -114139702 + RSINE1 SINE B4 3 165 0 8 854 264 247 27 0 chr6 35377396 35377469 -114139568 + L1M5 LINE L1 5731 5805 -319 8 854 24 53 0 0 chr6 35377855 35377893 -114139144 + AT_rich Low_complexity Low_complexity 1 38 0 8 854 968 252 9 0 chr6 35378052 35378266 -114138771 - B3 SINE B2 0 216 1 8 854 605 128 10 0 chr6 35378390 35378492 -114138545 + (GGA)n Simple_repeat Simple_repeat 3 105 0 8 854 197 86 57 0 chr6 35378485 35378520 -114138517 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 8 854 231 368 0 0 chr6 35378578 35378646 -114138391 + ID4 SINE ID 2 69 -14 8 854 309 109 0 0 chr6 35379363 35379418 -114137619 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 854 1279 278 68 35 chr6 35379426 35379884 -114137153 - Lx9 LINE L1 -207 7437 6965 8 854 392 192 39 0 chr6 35380127 35380205 -114136832 - ID_B1 SINE B4 -1 223 143 8 854 387 41 0 0 chr6 35380231 35380280 -114136757 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 854 2712 85 74 7 chr6 35380343 35380748 -114136289 + L1_Mus4 LINE L1 6205 6636 0 8 854 465 328 94 62 chr6 35380754 35380998 -114136039 - B4 SINE B4 -28 264 13 8 854 420 241 153 0 chr6 35381004 35381141 -114135896 - ID_B1 SINE B4 -63 161 4 8 854 762 272 46 78 chr6 35381400 35381707 -114135330 + L1MA5 LINE L1 5998 6294 -6 8 854 198 0 0 0 chr6 35381935 35381957 -114135080 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 8 854 288 300 44 0 chr6 35381957 35382047 -114134990 - PB1D10 SINE Alu -12 105 12 8 854 396 0 0 0 chr6 35382051 35382095 -114134942 + (TC)n Simple_repeat Simple_repeat 2 45 0 8 854 216 111 0 0 chr6 35382095 35382130 -114134907 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 854 1542 192 92 31 chr6 35382241 35382590 -114134447 - ORR1D2 LTR MaLR 0 370 1 8 854 1378 233 144 0 chr6 35382590 35382951 -114134086 + Lx8 LINE L1 6890 7302 -171 8 854 10148 8 1 0 chr6 35383474 35384604 -114132433 + L1Md_A LINE L1 214 1344 -5380 8 854 13832 3 0 0 chr6 35387331 35388846 -114128191 + L1Md_A LINE L1 4072 5586 -297 8 106 9194 3 0 0 chr6 35388846 35389842 -114127195 + L1Md_A LINE L1 5587 6582 0 8 855 288 356 55 0 chr6 35390713 35390876 -114126161 - Lx8 LINE L1 -96 7377 7206 8 855 369 0 0 0 chr6 35390876 35390917 -114126120 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 855 344 22 22 0 chr6 35390917 35390961 -114126076 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 855 552 358 35 71 chr6 35390971 35391377 -114125660 + MT2A LTR ERVL 72 462 -71 8 855 466 255 41 34 chr6 35391787 35391933 -114125104 - B1F1 SINE Alu 0 149 3 8 855 1563 185 12 51 chr6 35392172 35392508 -114124529 + ORR1D1 LTR MaLR 51 373 -1 8 855 527 309 30 57 chr6 35393818 35393885 -114123152 - MLT2B1 LTR ERVL 0 567 505 8 855 216 67 0 0 chr6 35393885 35393915 -114123122 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 8 855 527 309 30 57 chr6 35393915 35394077 -114122960 - MLT2B1 LTR ERVL -63 504 344 8 855 243 303 45 0 chr6 35394150 35394239 -114122798 - MLT2B1 LTR ERVL -389 167 75 8 855 535 164 81 16 chr6 35394528 35394652 -114122385 - ERVL-B4-int LTR ERVL -342 5372 5241 8 855 1642 160 62 8 chr6 35394655 35394984 -114122053 + ORR1B1 LTR MaLR 1 308 -86 8 855 949 123 336 40 chr6 35394978 35395231 -114121806 + RLTR33 LTR ERVK 176 503 -175 8 855 425 274 50 88 chr6 35395512 35395772 -114121265 - RMER20B LTR ERVK -208 419 168 8 855 372 309 8 47 chr6 35395881 35396010 -114121027 + RLTR33 LTR ERVK 468 591 -87 8 855 307 167 30 15 chr6 35396194 35396261 -114120776 + ORR1B1 LTR MaLR 265 332 -35 8 855 36128 35 0 1 chr6 35396261 35401892 -114115145 + L1Md_T LINE L1 1 5589 -297 8 855 9178 5 0 0 chr6 35401892 35402917 -114114120 + L1Md_T LINE L1 5590 6585 0 8 855 308 146 0 0 chr6 35402917 35402972 -114114065 + ORR1B1 LTR MaLR 340 394 0 8 855 2701 211 73 55 chr6 35402972 35403997 -114113040 + ORR1B1-int LTR MaLR 1 1129 -380 8 855 5104 136 36 24 chr6 35403997 35404876 -114112161 + RMER19B LTR ERVK 1 890 -12 8 855 1468 152 52 67 chr6 35404882 35405227 -114111810 + ORR1B1-int LTR MaLR 1170 1509 0 8 855 1926 159 119 6 chr6 35405227 35405581 -114111456 + ORR1B1 LTR MaLR 1 394 0 8 855 450 204 111 0 chr6 35405581 35405689 -114111348 - ERVL-B4-int LTR ERVL -484 5230 5111 8 855 425 302 30 40 chr6 35405766 35405966 -114111071 - RLTR42-int LTR ERVK -4122 1400 1203 8 855 571 268 54 29 chr6 35406109 35406313 -114110724 + ERVL-int LTR ERVL 4768 4976 -781 8 855 1429 135 92 20 chr6 35406316 35406424 -114110613 - RMER1B Other Other -9 1057 949 8 855 192 40 0 0 chr6 35406424 35406449 -114110588 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 855 1429 135 92 20 chr6 35406449 35406590 -114110447 - RMER1B Other Other -118 948 790 8 855 1908 125 42 140 chr6 35406598 35407055 -114109982 - RLTR23 LTR ERV1 -8 422 11 8 855 2312 206 9 28 chr6 35407078 35407607 -114109430 - RMER1B Other Other -273 793 204 8 855 514 228 0 75 chr6 35407607 35407740 -114109297 + ERVL-int LTR ERVL 4964 5086 -671 8 855 295 264 29 81 chr6 35408881 35409017 -114108020 + RMER15 LTR ERVL 2 130 -445 8 855 336 333 113 0 chr6 35409043 35409184 -114107853 + B4A SINE B4 3 159 -133 8 855 639 263 158 15 chr6 35409320 35409579 -114107458 + RMER15 LTR ERVL 279 574 -1 8 855 566 300 57 43 chr6 35410819 35411101 -114105936 - MER96B DNA hAT -67 350 65 8 855 996 251 78 33 chr6 35411202 35411535 -114105502 + ORR1E LTR MaLR 6 353 -6 8 855 1887 84 84 39 chr6 35411543 35411876 -114105161 - RLTR10B2 LTR ERVK 0 365 18 8 855 239 86 0 0 chr6 35411897 35411932 -114105105 - RLTR10B2 LTR ERVK -249 43 9 8 855 323 0 0 0 chr6 35411940 35411982 -114105055 - RLTR10B LTR ERVK -250 42 1 8 855 1387 205 70 19 chr6 35414117 35414442 -114102595 + MTE2b LTR MaLR 3 344 -35 8 855 765 85 0 0 chr6 35414442 35414548 -114102489 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 8 855 1387 205 70 19 chr6 35414548 35414581 -114102456 + MTE2b LTR MaLR 345 378 -1 8 855 1736 203 84 18 chr6 35414860 35415242 -114101795 + MTD LTR MaLR 13 419 0 8 855 21 0 0 0 chr6 35415920 35415941 -114101096 + AT_rich Low_complexity Low_complexity 1 21 0 8 855 730 299 44 18 chr6 35415955 35416228 -114100809 - B4A SINE B4 -12 280 1 8 855 21 57 0 0 chr6 35416710 35416745 -114100292 + AT_rich Low_complexity Low_complexity 1 35 0 8 855 447 161 0 0 chr6 35416837 35416918 -114100119 + URR1B DNA MER1_type 145 225 0 8 855 364 252 8 108 chr6 35417222 35417342 -114099695 + MTEa LTR MaLR 3 110 -269 8 855 1447 35 0 12 chr6 35417504 35417697 -114099340 + L1Md_A LINE L1 5401 5586 -297 8 855 9239 1 0 0 chr6 35417697 35418693 -114098344 + L1Md_A LINE L1 5587 6582 0 8 855 203 400 17 46 chr6 35418746 35418919 -114098118 + L3 LINE CR1 3854 4021 -468 8 855 36033 69 4 15 chr6 35419274 35425482 -114091555 - L1Md_F2 LINE L1 0 6582 483 8 855 4288 78 39 7 chr6 35425502 35426068 -114090969 - MT2B2 LTR ERVL 0 584 1 8 855 3479 250 133 9 chr6 35426594 35427329 -114089708 + RMER1A Other Other 8 836 -506 8 855 3109 82 193 15 chr6 35427329 35427810 -114089227 - RMER2 LTR ERV1 0 567 1 8 855 3479 217 148 27 chr6 35427810 35427886 -114089151 + RMER1A Other Other 130 212 -818 8 855 2100 106 51 0 chr6 35427886 35428197 -114088840 + ORR1A4 LTR MaLR 1 327 -2 8 855 3479 217 148 27 chr6 35428197 35428699 -114088338 + RMER1A Other Other 213 758 -272 8 855 2197 140 62 5 chr6 35428699 35429072 -114087965 - ORR1B1 LTR MaLR 0 394 1 8 855 3479 217 148 27 chr6 35429072 35429284 -114087753 + RMER1A Other Other 759 1029 -1 8 855 236 257 43 0 chr6 35429677 35429747 -114087290 - MLT1B LTR MaLR -65 325 253 8 855 2745 64 8 8 chr6 35430321 35430684 -114086353 - L1Md_F2 LINE L1 -2 6580 6218 8 855 320 373 36 32 chr6 35430930 35431149 -114085888 - MER68 LTR ERVL -185 378 159 8 855 227 218 73 0 chr6 35431162 35431217 -114085820 - LSU-rRNA_Hsa rRNA rRNA -661 4374 4316 8 855 243 297 27 0 chr6 35432819 35432893 -114084144 + MER5A1 DNA MER1_type 2 77 -89 8 855 329 0 24 0 chr6 35433055 35433096 -114083941 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 855 215 289 0 0 chr6 35433108 35433160 -114083877 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 855 3636 157 46 14 chr6 35433758 35433874 -114083163 - RMER6D LTR ERVK 0 720 607 8 855 2154 111 193 0 chr6 35433874 35434253 -114082784 + RLTR44E LTR ERVK 1 452 0 8 855 3636 157 46 14 chr6 35434253 35434830 -114082207 - RMER6D LTR ERVK -114 606 5 8 855 40074 33 3 0 chr6 35435428 35441806 -114075231 - L1Md_T LINE L1 0 6582 183 8 855 327 268 0 0 chr6 35441975 35442046 -114074991 + ID4_ SINE ID 2 72 -11 8 855 361 252 44 26 chr6 35442381 35442495 -114074542 + B1F SINE Alu 34 149 0 8 855 307 226 0 0 chr6 35442666 35442728 -114074309 - MER63D DNA AcHobo -991 70 9 8 855 921 329 62 39 chr6 35443996 35444432 -114072605 + LTR31 LTR ERV1 144 589 -30 8 855 1032 317 116 29 chr6 35444669 35445082 -114071955 - MLT2B2 LTR ERVL -51 464 16 8 855 2325 203 88 16 chr6 35446626 35447182 -114069855 - RMER1B Other Other -23 1043 448 8 855 241 237 83 31 chr6 35447603 35447699 -114069338 + MER113 DNA MER1_type 54 154 -367 8 855 6878 192 95 22 chr6 35447904 35449596 -114067441 + Lx7 LINE L1 5882 7696 0 8 855 1008 248 122 10 chr6 35449927 35450330 -114066707 + L1MB4 LINE L1 5728 6175 -5 8 855 312 207 0 49 chr6 35451048 35451109 -114065928 + HAL1-3A_ME LINE L1 1955 2012 -846 9 855 526 162 27 0 chr6 35451109 35451220 -114065817 + (CATA)n Simple_repeat Simple_repeat 1 114 0 9 855 1359 271 113 6 chr6 35451536 35452003 -114065034 - Lx8 LINE L1 -360 7113 6597 9 855 518 340 45 0 chr6 35452523 35452679 -114064358 - RSINE1 SINE B4 0 165 3 9 855 549 286 24 72 chr6 35452750 35452916 -114064121 - RSINE1 SINE B4 0 165 8 9 855 210 316 26 26 chr6 35453742 35453820 -114063217 - MIRm SINE MIR -20 256 179 9 855 256 224 0 65 chr6 35454199 35454261 -114062776 - MLT1B LTR MaLR -294 96 39 9 855 509 345 27 9 chr6 35454291 35454513 -114062524 + RLTR11A2 LTR ERVK 34 259 -268 9 855 255 233 65 65 chr6 35454494 35454632 -114062405 + RLTR11A2 LTR ERVK 195 332 -121 9 855 343 306 35 26 chr6 35458098 35458212 -114058825 - MER5A DNA MER1_type -70 119 5 9 855 21 0 0 0 chr6 35459295 35459316 -114057721 + AT_rich Low_complexity Low_complexity 1 21 0 9 855 24 53 0 0 chr6 35459932 35459970 -114057067 + AT_rich Low_complexity Low_complexity 1 38 0 9 855 226 154 0 0 chr6 35460391 35460430 -114056607 + U2 snRNA snRNA 1 39 -149 9 855 396 0 0 0 chr6 35460590 35460634 -114056403 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 855 317 303 29 57 chr6 35462414 35462519 -114054518 + RSINE1 SINE B4 64 165 0 9 855 1568 185 91 18 chr6 35462585 35462916 -114054121 - ORR1D1 LTR MaLR 0 374 20 9 855 751 35 254 9 chr6 35463075 35463189 -114053848 - B1_Mus1 SINE Alu -6 142 1 9 855 1030 228 120 18 chr6 35464907 35465266 -114051771 + MTD LTR MaLR 3 419 0 9 855 4734 32 0 5 chr6 35465469 35466031 -114051006 - L1Md_F2 LINE L1 -14 6568 6010 9 855 21 36 0 0 chr6 35466558 35466586 -114050451 + AT_rich Low_complexity Low_complexity 1 28 0 9 855 513 0 0 0 chr6 35467221 35467278 -114049759 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 9 855 26 50 0 0 chr6 35467629 35467669 -114049368 + AT_rich Low_complexity Low_complexity 1 40 0 9 855 185 329 73 0 chr6 35467839 35467921 -114049116 - MIRb SINE MIR -78 190 103 9 855 2407 65 23 0 chr6 35467932 35468240 -114048797 + ORR1A2 LTR MaLR 5 319 -8 9 855 301 319 25 14 chr6 35468555 35468698 -114048339 + MER58B DNA MER1_type 150 291 -50 9 855 1773 9 5 5 chr6 35468694 35468905 -114048132 + MTA_Mm LTR MaLR 186 396 0 9 855 357 60 0 0 chr6 35468906 35468956 -114048081 - L1Md_F2 LINE L1 -438 6144 6095 9 855 209 356 14 14 chr6 35468970 35469044 -114047993 + MIR SINE MIR 158 231 -31 9 855 273 210 0 0 chr6 35469639 35469701 -114047336 + GA-rich Low_complexity Low_complexity 2 63 0 9 855 926 57 25 0 chr6 35470947 35471069 -114045968 + B1_Mm SINE Alu 23 147 0 9 855 275 207 6 89 chr6 35471583 35471714 -114045323 - Charlie10a DNA MER1_type -30 250 107 9 855 180 231 198 52 chr6 35472094 35472190 -114044847 + MIRc SINE MIR 37 146 -122 9 855 276 319 34 17 chr6 35474091 35474209 -114042828 + MIR SINE MIR 92 211 -51 9 855 288 273 0 0 chr6 35474542 35474630 -114042407 + (TA)n Simple_repeat Simple_repeat 1 88 0 9 855 579 269 295 0 chr6 35475007 35475156 -114041881 - ID_B1 SINE B4 -11 213 21 9 855 227 268 157 20 chr6 35475685 35475933 -114041104 + L1M5 LINE L1 3009 3290 -2856 9 855 244 302 34 17 chr6 35475955 35476073 -114040964 + L1MD LINE L1 3513 3632 -2514 9 855 534 16 0 0 chr6 35478637 35478700 -114038337 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 855 192 337 29 67 chr6 35479028 35479133 -114037904 + MIRb SINE MIR 23 123 -145 9 855 180 236 181 0 chr6 35479524 35479596 -114037441 + L2a LINE L2 3338 3422 -4 9 855 585 252 76 94 chr6 35480131 35480354 -114036683 + MER58A DNA MER1_type 5 223 -1 9 855 618 116 0 0 chr6 35480571 35480657 -114036380 - B2_Mm2 SINE B2 -108 87 2 9 855 1083 82 0 7 chr6 35481521 35481668 -114035369 + B1_Mm SINE Alu 2 147 0 9 855 652 31 0 20 chr6 35482666 35482766 -114034271 + L1_Mus3 LINE L1 6533 6630 -8 9 855 616 279 63 0 chr6 35483203 35483425 -114033612 - Lx7 LINE L1 -1805 5891 5656 9 855 1457 154 205 29 chr6 35483531 35483577 -114033460 + MTC LTR MaLR 61 118 -303 9 855 207 100 0 0 chr6 35483577 35483607 -114033430 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 9 855 1457 154 205 29 chr6 35483607 35483867 -114033170 + MTC LTR MaLR 119 420 -1 9 855 367 345 21 7 chr6 35484195 35484335 -114032702 + B1_Mur3 SINE Alu 6 147 -2 9 855 1576 32 21 0 chr6 35484592 35484779 -114032258 + B2_Mm1t SINE B2 2 192 -1 9 855 22 0 0 0 chr6 35484836 35484858 -114032179 + AT_rich Low_complexity Low_complexity 1 22 0 9 855 1635 42 0 0 chr6 35484966 35485158 -114031879 - B2_Mm1a SINE B2 0 193 2 9 855 557 298 202 24 chr6 35485414 35485662 -114031375 - B4A SINE B4 0 292 1 9 855 266 298 36 71 chr6 35486502 35486614 -114030423 + MIR SINE MIR 3 110 -152 9 855 234 0 0 0 chr6 35487090 35487116 -114029921 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 9 855 201 329 106 0 chr6 35487123 35487208 -114029829 + MIRb SINE MIR 36 129 -139 9 855 653 67 191 0 chr6 35487240 35487345 -114029692 - B1_Mus2 SINE Alu -21 126 2 9 855 206 167 21 0 chr6 35487592 35487640 -114029397 + T-rich Low_complexity Low_complexity 1 49 0 9 855 216 0 0 0 chr6 35487999 35488023 -114029014 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 9 855 288 0 0 0 chr6 35488691 35488723 -114028314 + (TAA)n Simple_repeat Simple_repeat 2 33 0 9 855 437 47 0 15 chr6 35490117 35490182 -114026855 + (TAA)n Simple_repeat Simple_repeat 1 64 0 9 855 757 233 19 33 chr6 35490413 35490626 -114026411 - B3 SINE B2 -3 213 4 9 855 419 283 106 21 chr6 35490997 35491138 -114025899 - RSINE1 SINE B4 -10 155 3 9 855 571 365 100 25 chr6 35492694 35493054 -114023983 + MLT1I LTR MaLR 19 405 -6 9 855 313 390 53 46 chr6 35493103 35493383 -114023654 + MLT1I-int LTR MaLR 57 338 -1049 9 855 575 225 119 7 chr6 35493383 35493526 -114023511 + B3A SINE B2 2 160 -38 9 855 399 41 0 0 chr6 35493531 35493580 -114023457 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 855 1108 64 7 0 chr6 35493637 35493777 -114023260 + B1_Mus2 SINE Alu 1 141 -6 9 855 189 0 0 0 chr6 35493778 35493799 -114023238 + (CAA)n Simple_repeat Simple_repeat 1 21 0 9 855 740 17 50 8 chr6 35493874 35493993 -114023044 + (GA)n Simple_repeat Simple_repeat 1 124 0 9 855 921 308 80 52 chr6 35494232 35494711 -114022326 + MLT1I-int LTR MaLR 776 1276 -111 9 855 374 274 0 14 chr6 35494745 35494819 -114022218 - ID4_ SINE ID -4 79 7 9 855 255 309 148 0 chr6 35494782 35494863 -114022174 - ZP3AR Satellite Satellite -74 138 46 9 855 302 270 71 9 chr6 35495345 35495457 -114021580 - MLT1A0 LTR MaLR -23 342 224 9 855 1949 163 47 16 chr6 35495457 35495631 -114021406 + ORR1B1 LTR MaLR 3 174 -220 9 855 285 98 0 0 chr6 35495631 35495672 -114021365 + (TA)n Simple_repeat Simple_repeat 2 42 0 9 855 1949 163 47 16 chr6 35495672 35495877 -114021160 + ORR1B1 LTR MaLR 175 393 -1 9 855 2081 173 48 13 chr6 35495877 35496252 -114020785 + ORR1B1-int LTR MaLR 1 388 -1575 9 855 215 125 0 24 chr6 35496382 35496423 -114020614 + (TA)n Simple_repeat Simple_repeat 1 40 0 9 855 1121 56 14 7 chr6 35496573 35496717 -114020320 - B1_Mus1 SINE Alu -2 146 2 9 855 1207 180 119 127 chr6 35496793 35496821 -114020216 + ORR1B1 LTR MaLR 1 25 -359 9 855 2122 205 22 10 chr6 35496821 35497235 -114019802 - MTC LTR MaLR -2 419 1 9 855 1207 180 119 127 chr6 35497235 35497593 -114019444 + ORR1B1 LTR MaLR 26 384 0 9 855 2915 219 9 2 chr6 35497710 35498255 -114018782 + Lx6 LINE L1 6912 7460 0 9 855 975 82 0 0 chr6 35498380 35498514 -114018523 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 9 855 7546 85 12 2 chr6 35498568 35500000 -114017037 - L1_Mus4 LINE L1 -7 6629 5177 9 855 338 24 0 0 chr6 35500001 35500042 -114016995 - L1_Mur2 LINE L1 -708 5169 5129 1 855 2325 160 45 9 chr6 35500038 35500486 -114016551 + L1_Mm LINE L1 4673 5136 -747 2 855 197 264 133 0 chr6 35500579 35500690 -114016347 - L2a LINE L2 -257 3169 3038 3 855 19265 55 1 0 chr6 35500697 35503250 -114013787 + L1Md_F2 LINE L1 3030 5585 -298 4 855 8143 37 12 3 chr6 35503251 35504238 -114012799 + L1Md_F2 LINE L1 5587 6582 0 4 855 1255 99 55 6 chr6 35504352 35504535 -114012502 - B2_Mm2 SINE B2 -3 192 1 5 855 1225 306 31 20 chr6 35504773 35505123 -114011914 + ORR1E LTR MaLR 6 359 0 6 855 378 0 0 0 chr6 35506004 35506046 -114010991 + (TC)n Simple_repeat Simple_repeat 2 43 0 7 855 391 301 123 59 chr6 35507249 35507436 -114009601 - MER20 DNA MER1_type -17 202 4 8 855 406 230 0 22 chr6 35507674 35507763 -114009274 + RMER30 DNA MER1_type 1 87 -115 9 855 292 244 14 150 chr6 35507710 35507850 -114009187 - Charlie12 DNA MER1_type -2699 174 54 1 855 370 172 69 20 chr6 35507888 35507989 -114009048 - MER2 DNA MER2_type -132 213 108 1 855 1084 106 0 0 chr6 35507990 35508132 -114008905 + B1_Mus2 SINE Alu 2 143 -4 1 855 216 0 0 0 chr6 35508177 35508201 -114008836 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 855 422 294 117 78 chr6 35508227 35508508 -114008529 - B4A SINE B4 0 292 1 1 855 516 274 6 40 chr6 35509034 35509209 -114007828 + L1MA6 LINE L1 6115 6283 -17 1 855 1082 320 66 80 chr6 35509918 35510478 -114006559 + MLT1F2 LTR MaLR 1 552 -8 1 855 360 309 60 13 chr6 35510657 35510808 -114006229 - MER3 DNA MER1_type -50 159 2 1 855 2178 213 12 12 chr6 35510831 35511245 -114005792 + MTD LTR MaLR 1 414 -5 1 855 218 200 14 0 chr6 35512125 35512167 -114004870 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 855 315 0 0 0 chr6 35512167 35512202 -114004835 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 855 218 200 14 0 chr6 35512202 35512229 -114004808 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 855 180 240 40 0 chr6 35512230 35512280 -114004757 - MIR SINE MIR -152 110 59 2 855 830 102 8 0 chr6 35512675 35512802 -114004235 + (TTTTC)n Simple_repeat Simple_repeat 2 129 0 2 855 1134 71 0 0 chr6 35512805 35512945 -114004092 - B1_Mus2 SINE Alu -6 141 2 2 855 1779 195 2 89 chr6 35513972 35514378 -114002659 - ORR1D1 LTR MaLR 0 374 4 2 855 210 37 0 0 chr6 35514506 35514533 -114002504 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 855 349 258 73 36 chr6 35514723 35514860 -114002177 + MIR SINE MIR 42 188 -80 2 855 227 146 18 0 chr6 35515671 35515726 -114001311 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 855 555 56 0 0 chr6 35515762 35515833 -114001204 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 855 363 299 102 80 chr6 35515834 35516123 -114000914 - B4 SINE B4 -11 281 2 2 855 446 252 41 41 chr6 35516274 35516419 -114000618 + B1F SINE Alu 4 148 -1 3 855 330 67 0 0 chr6 35516422 35516467 -114000570 + (CAAT)n Simple_repeat Simple_repeat 3 47 0 3 855 203 382 152 45 chr6 35516726 35516970 -114000067 + L3 LINE CR1 4217 4486 -3 3 855 483 296 43 47 chr6 35517140 35517374 -113999663 + Charlie26a DNA MER1_type 59 291 -34 3 855 228 277 177 21 chr6 35517802 35517898 -113999139 + L2a LINE L2 3316 3426 0 3 855 200 111 28 0 chr6 35518570 35518606 -113998431 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 3 855 297 306 47 0 chr6 35518626 35518724 -113998313 - PB1D7 SINE Alu -5 115 12 3 855 305 246 15 0 chr6 35519099 35519164 -113997873 + tRNA-Ala-GCA tRNA tRNA 3 68 -7 3 855 264 330 105 19 chr6 35519179 35519284 -113997753 - MER5B DNA MER1_type -64 114 1 3 855 378 361 137 24 chr6 35519504 35519958 -113997079 - L2 LINE L2 -578 2841 2337 3 106 6072 65 4 0 chr6 35520094 35520865 -113996172 + L1_Mus1 LINE L1 5794 6567 0 4 856 297 109 0 0 chr6 35521226 35521272 -113995765 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 856 244 322 33 25 chr6 35521526 35521647 -113995390 + MIR SINE MIR 84 205 -57 4 856 529 216 216 0 chr6 35521965 35522132 -113994905 + MTD LTR MaLR 203 405 -14 4 856 374 221 0 14 chr6 35522181 35522250 -113994787 - B4A SINE B4 -204 88 21 4 856 36281 30 0 0 chr6 35522272 35528519 -113988518 - L1Md_T LINE L1 0 6585 242 4 856 25 31 0 0 chr6 35528528 35528560 -113988477 + AT_rich Low_complexity Low_complexity 1 32 0 4 856 252 0 0 0 chr6 35528767 35528795 -113988242 + (A)n Simple_repeat Simple_repeat 1 28 0 4 856 436 279 65 50 chr6 35529015 35529215 -113987822 + RLTR23 LTR ERV1 228 430 0 4 856 923 159 6 0 chr6 35530108 35530278 -113986759 + CT-rich Low_complexity Low_complexity 2 172 0 4 856 617 309 40 108 chr6 35532186 35532564 -113984473 + ORR1E LTR MaLR 8 359 0 5 856 1168 180 39 0 chr6 35533477 35533683 -113983354 - B3 SINE B2 0 216 3 5 856 32260 93 23 9 chr6 35533714 35539963 -113977074 - L1Md_F2 LINE L1 -10 6572 237 5 856 2852 83 39 0 chr6 35540210 35540595 -113976442 - MTB LTR MaLR 0 400 1 5 856 522 301 24 16 chr6 35541281 35541406 -113975631 + B3 SINE B2 1 126 -90 5 856 528 93 0 0 chr6 35541415 35541490 -113975547 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 856 1163 284 32 3 chr6 35542626 35542968 -113974069 - MER34 LTR ERV1 0 542 191 5 856 2184 148 56 0 chr6 35543023 35543380 -113973657 + ORR1C1 LTR MaLR 2 378 0 5 856 180 0 0 0 chr6 35543632 35543652 -113973385 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 5 856 765 145 95 18 chr6 35543660 35543767 -113973270 + Lx LINE L1 6412 6518 -136 5 856 189 0 0 0 chr6 35543767 35543788 -113973249 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 6 856 765 145 95 18 chr6 35543788 35543849 -113973188 + Lx LINE L1 6519 6591 -63 5 856 989 254 0 5 chr6 35544016 35544226 -113972811 - B3 SINE B2 -6 210 2 6 856 340 308 168 54 chr6 35544301 35544634 -113972403 + Kanga11a DNA Tc2 2 372 -598 6 856 213 158 53 0 chr6 35544976 35545014 -113972023 - ID2 SINE ID -6 77 38 6 856 386 325 16 0 chr6 35545135 35545261 -113971776 - Tigger2b DNA MER2_type -5 721 594 6 856 280 289 103 7 chr6 35545697 35545833 -113971204 + L2 LINE L2 2535 2683 -736 6 856 244 342 0 0 chr6 35545931 35546010 -113971027 - ID4 SINE ID 0 83 5 6 856 185 108 0 26 chr6 35546311 35546349 -113970688 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 6 856 204 40 0 0 chr6 35546351 35546376 -113970661 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 856 273 118 0 0 chr6 35546414 35546465 -113970572 + (TTTTG)n Simple_repeat Simple_repeat 1 51 0 6 856 519 285 48 11 chr6 35546543 35546731 -113970306 + Lx8 LINE L1 7131 7325 -148 7 856 759 288 74 94 chr6 35547959 35548328 -113968709 + ORR1E LTR MaLR 3 376 -3 7 856 459 0 0 0 chr6 35549284 35549335 -113967702 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 856 1320 278 60 5 chr6 35549881 35550296 -113966741 + Lx5 LINE L1 6565 7002 -48 7 856 201 39 0 0 chr6 35551180 35551206 -113965831 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 856 526 292 160 28 chr6 35552534 35552816 -113964221 - Tigger7 DNA MER2_type -2014 477 159 7 856 1637 209 39 8 chr6 35552890 35553248 -113963789 - ORR1D1 LTR MaLR -3 371 3 7 856 306 273 5 0 chr6 35554214 35554295 -113962742 - B3A SINE B2 -110 83 1 7 856 5091 54 2 0 chr6 35554372 35554997 -113962040 + L1_Mus1 LINE L1 5941 6566 -1 7 856 183 188 0 0 chr6 35555000 35555048 -113961989 + A-rich Low_complexity Low_complexity 1 48 0 7 856 2990 246 32 61 chr6 35555755 35556556 -113960481 - Lx8 LINE L1 -326 7147 6370 8 856 22 0 0 0 chr6 35556623 35556645 -113960392 + AT_rich Low_complexity Low_complexity 1 22 0 8 856 392 0 0 20 chr6 35556795 35556844 -113960193 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 8 856 384 287 8 39 chr6 35556899 35557026 -113960011 - MLT2D LTR ERVL -57 503 381 8 856 608 313 20 7 chr6 35557029 35557180 -113959857 - RSINE1 SINE B4 -10 155 3 8 856 28 0 0 0 chr6 35557274 35557302 -113959735 + AT_rich Low_complexity Low_complexity 1 28 0 8 856 726 185 15 0 chr6 35557309 35557439 -113959598 - B3 SINE B2 0 216 85 8 856 782 281 39 50 chr6 35557503 35557863 -113959174 + ORR1E LTR MaLR 1 356 -3 8 856 413 339 78 86 chr6 35557870 35558019 -113959018 + MLT1K LTR MaLR 228 371 -224 8 856 3225 65 30 10 chr6 35558019 35558423 -113958614 + L1_Mus1 LINE L1 6156 6567 0 8 856 413 339 78 86 chr6 35558423 35558644 -113958393 + MLT1K LTR MaLR 372 595 0 8 856 461 336 88 11 chr6 35558671 35559035 -113958002 - HAL1 LINE L1 -110 2397 2006 9 856 23 0 0 0 chr6 35559096 35559119 -113957918 + AT_rich Low_complexity Low_complexity 1 23 0 9 856 552 15 0 0 chr6 35559458 35559523 -113957514 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 856 235 356 14 0 chr6 35559564 35559637 -113957400 + B4 SINE B4 1 74 -218 9 856 339 141 0 0 chr6 35559642 35559706 -113957331 + (CCAA)n Simple_repeat Simple_repeat 2 65 0 9 856 2226 128 20 11 chr6 35560356 35560712 -113956325 + ORR1B2 LTR MaLR 5 363 -4 9 856 2909 38 5 3 chr6 35560702 35561070 -113955967 - MT-int LTR MaLR -65 1033 665 9 856 901 166 197 44 chr6 35561613 35561796 -113955241 + B3 SINE B2 2 212 -4 9 856 232 364 0 0 chr6 35561892 35561958 -113955079 - ID_B1 SINE B4 -54 170 105 9 856 349 280 102 0 chr6 35562110 35562228 -113954809 + Tigger13a DNA MER2_type 571 700 -71 9 856 203 257 52 39 chr6 35562339 35562416 -113954621 + MIRm SINE MIR 199 276 0 1 856 218 307 28 3 chr6 35562416 35562508 -113954529 - MIRc SINE MIR -74 194 99 1 856 547 279 25 0 chr6 35562712 35562834 -113954203 + RSINE1 SINE B4 19 143 -22 1 856 243 174 96 55 chr6 35563177 35563250 -113953787 + Charlie24 DNA MER1_type 1006 1081 -1369 1 856 12489 117 38 2 chr6 35563387 35566450 -113950587 + L1VL4 LINE L1 536 3746 -168 1 856 208 0 30 30 chr6 35566450 35566483 -113950554 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1 856 391 35 3 3 chr6 35566485 35566544 -113950493 - B1_Mm SINE Alu 0 149 91 1 856 1216 57 6 6 chr6 35566544 35566720 -113950317 + L1VL4 LINE L1 3734 3909 -5 1 856 29 70 0 0 chr6 35568077 35568134 -113948903 + AT_rich Low_complexity Low_complexity 1 57 0 1 856 6575 114 27 0 chr6 35568140 35568241 -113948796 - Lx2 LINE L1 -15 6982 6868 1 856 207 0 0 0 chr6 35568241 35568264 -113948773 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 1 856 6575 114 27 0 chr6 35568264 35569089 -113947948 - Lx2 LINE L1 -130 6867 6032 1 856 1255 251 40 3 chr6 35569964 35570316 -113946721 - L1MA5 LINE L1 0 6300 5936 1 856 839 310 25 51 chr6 35570766 35571041 -113945996 + B4A SINE B4 2 269 -23 1 856 405 0 0 0 chr6 35571084 35571129 -113945908 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 856 225 337 0 46 chr6 35571133 35571220 -113945817 - ID4_ SINE ID 0 83 1 1 856 416 128 13 0 chr6 35571353 35571431 -113945606 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 856 271 287 70 89 chr6 35572129 35572286 -113944751 + MIRb SINE MIR 30 183 -85 1 856 714 300 79 23 chr6 35572353 35572619 -113944418 - MLT1D LTR MaLR -45 460 180 1 856 559 264 195 25 chr6 35572647 35572794 -113944243 - MLT1A1 LTR MaLR -59 349 189 1 856 3311 32 3 0 chr6 35572794 35573165 -113943872 + L1Md_T LINE L1 6211 6582 0 1 856 559 251 227 25 chr6 35573165 35573327 -113943710 - MLT1A1 LTR MaLR -220 188 7 1 856 584 209 66 20 chr6 35573334 35573485 -113943552 - MLT1D LTR MaLR -333 172 15 1 856 642 282 82 29 chr6 35573724 35573969 -113943068 - MER33 DNA MER1_type -45 279 22 1 856 480 309 81 38 chr6 35574447 35574656 -113942381 - MLT1D LTR MaLR -54 451 234 1 856 715 314 15 0 chr6 35577684 35577888 -113939149 - MLT1B LTR MaLR -1 389 183 1 856 312 296 10 39 chr6 35577972 35578074 -113938963 + PB1D9 SINE Alu 1 99 -21 1 856 425 292 133 0 chr6 35578840 35578960 -113938077 - B1F2 SINE Alu -12 137 2 1 856 23 0 0 0 chr6 35578997 35579020 -113938017 + AT_rich Low_complexity Low_complexity 1 23 0 1 856 210 71 0 0 chr6 35579126 35579154 -113937883 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1 856 252 0 0 0 chr6 35579365 35579393 -113937644 + (T)n Simple_repeat Simple_repeat 1 28 0 1 856 741 254 37 31 chr6 35579511 35579691 -113937346 + B3A SINE B2 1 183 -15 1 856 324 0 0 0 chr6 35579691 35579727 -113937310 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 856 318 115 0 0 chr6 35579727 35579778 -113937259 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 856 1283 190 152 19 chr6 35580955 35581277 -113935760 - ORR1D1 LTR MaLR -1 373 9 1 856 379 278 146 0 chr6 35581278 35581422 -113935615 - MIR SINE MIR -92 170 6 1 856 3238 287 19 45 chr6 35582466 35583429 -113933608 + Lx8 LINE L1 6299 7236 -237 1 856 705 62 27 0 chr6 35583590 35583702 -113933335 + (GA)n Simple_repeat Simple_repeat 1 115 0 1 856 192 327 0 91 chr6 35584963 35585084 -113931953 - L2a LINE L2 -215 3211 3102 1 856 1160 255 14 58 chr6 35585130 35585425 -113931612 + B4A SINE B4 1 282 -10 1 856 899 103 7 0 chr6 35586079 35586234 -113930803 + (GA)n Simple_repeat Simple_repeat 1 156 0 1 856 588 202 24 6 chr6 35586405 35586569 -113930468 + C-rich Low_complexity Low_complexity 3 169 0 1 856 206 32 32 0 chr6 35586687 35586718 -113930319 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 856 395 235 125 43 chr6 35586749 35586914 -113930123 - MTEb LTR MaLR -5 416 244 1 856 1203 262 75 36 chr6 35587008 35587593 -113929444 + L1MA4A LINE L1 5541 6112 -938 1 856 590 261 380 0 chr6 35587675 35587909 -113929128 + Lx8 LINE L1 7010 7332 -141 1 856 1548 70 16 0 chr6 35587923 35588109 -113928928 - B2_Mm2 SINE B2 -5 190 2 1 856 29 0 0 0 chr6 35588113 35588142 -113928895 + AT_rich Low_complexity Low_complexity 1 29 0 1 856 255 114 0 0 chr6 35588142 35588186 -113928851 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 856 790 303 18 0 chr6 35588189 35588354 -113928683 - B3A SINE B2 -30 168 1 1 856 387 214 92 38 chr6 35588358 35588489 -113928548 + Lx8 LINE L1 7329 7466 -7 1 856 56 39 0 0 chr6 35588495 35588572 -113928465 + AT_rich Low_complexity Low_complexity 1 77 0 1 856 981 150 185 14 chr6 35588572 35588788 -113928249 - RMER1B Other Other -9 1057 805 1 856 432 0 0 0 chr6 35591024 35591072 -113925965 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 856 576 0 0 0 chr6 35591072 35591135 -113925902 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 856 700 301 14 8 chr6 35591303 35591487 -113925550 - B3A SINE B2 -30 186 3 1 856 573 286 47 37 chr6 35592381 35592595 -113924442 - B3 SINE B2 0 216 1 1 856 309 318 30 72 chr6 35593102 35593268 -113923769 - MLT1J LTR MaLR -79 433 275 1 856 371 312 78 28 chr6 35593295 35593437 -113923600 - B1_Mur3 SINE Alu 0 149 1 1 856 469 312 27 14 chr6 35593437 35593467 -113923570 - ID SINE ID -139 85 54 1 856 591 235 54 36 chr6 35593621 35593803 -113923234 + B3A SINE B2 1 211 -5 1 856 819 161 0 7 chr6 35594296 35594440 -113922597 - URR1B DNA MER1_type 0 225 83 1 856 972 220 115 28 chr6 35594769 35595021 -113922016 - Lx8 LINE L1 -1011 6462 6189 1 856 237 250 0 36 chr6 35595077 35595160 -113921877 + CT-rich Low_complexity Low_complexity 3 82 0 1 856 1364 86 0 0 chr6 35596400 35596574 -113920463 - L1_Mus1 LINE L1 0 6567 6394 1 856 931 332 67 13 chr6 35596707 35597094 -113919943 + MLT1D LTR MaLR 34 441 -64 1 856 21 36 0 0 chr6 35597402 35597430 -113919607 + AT_rich Low_complexity Low_complexity 1 28 0 1 856 213 261 14 42 chr6 35597677 35597749 -113919288 + CT-rich Low_complexity Low_complexity 1 70 0 1 856 955 283 94 37 chr6 35598480 35598939 -113918098 - RLTR12B LTR ERVK -42 486 2 1 856 243 314 29 0 chr6 35599528 35599598 -113917439 - LTR16A LTR ERVL -116 335 264 1 856 480 227 75 57 chr6 35599684 35599751 -113917286 + MER53 DNA hAT 11 83 -110 1 856 218 56 28 0 chr6 35599751 35599787 -113917250 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 856 520 189 71 39 chr6 35599787 35599878 -113917159 - MER53 DNA hAT -73 120 32 1 856 436 298 49 18 chr6 35599880 35600044 -113916993 - LTR16A LTR ERVL -282 169 1 1 856 1012 291 24 21 chr6 35600814 35601102 -113915935 - B4A SINE B4 -3 289 1 1 856 271 277 50 113 chr6 35601103 35601262 -113915775 - L2a LINE L2 -12 3414 3266 1 856 254 132 19 0 chr6 35601733 35601786 -113915251 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 856 540 68 0 0 chr6 35601857 35601930 -113915107 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 856 336 77 0 0 chr6 35601933 35601985 -113915052 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 1 856 557 291 104 39 chr6 35602063 35602245 -113914792 - B4A SINE B4 -98 194 1 1 856 3025 215 133 74 chr6 35602404 35603216 -113913821 - RMER13A LTR ERVK 0 860 1 1 856 1217 221 0 0 chr6 35603364 35603572 -113913465 - B3 SINE B2 -7 209 2 1 856 860 164 50 7 chr6 35603729 35603870 -113913167 + B1_Mur1 SINE Alu 2 148 -1 1 856 194 192 0 19 chr6 35605663 35605716 -113911321 + T-rich Low_complexity Low_complexity 2 53 0 1 856 210 236 0 0 chr6 35605822 35605877 -113911160 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 856 860 257 61 21 chr6 35605877 35606146 -113910891 - B4A SINE B4 0 292 6 1 856 971 256 152 19 chr6 35606213 35606535 -113910502 - MLT2D LTR ERVL -49 365 1 1 856 252 0 0 0 chr6 35608014 35608042 -113908995 + (T)n Simple_repeat Simple_repeat 1 28 0 1 856 300 27 0 0 chr6 35608393 35608430 -113908607 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 856 1443 234 95 21 chr6 35608869 35609248 -113907789 + MTC LTR MaLR 1 407 -14 1 856 31568 79 32 2 chr6 35609895 35615973 -113901064 - L1Md_F2 LINE L1 0 6582 319 1 856 453 19 0 0 chr6 35616841 35616895 -113900142 + (CAAGG)n Simple_repeat Simple_repeat 4 57 0 1 856 1037 303 7 17 chr6 35620373 35620665 -113896372 + B4 SINE B4 1 289 -3 1 856 450 0 0 0 chr6 35620686 35620736 -113896301 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 856 852 200 187 65 chr6 35620929 35621266 -113895771 - MTEb LTR MaLR 0 379 2 1 856 29635 88 52 5 chr6 35621330 35627071 -113889966 - L1Md_F2 LINE L1 0 6582 556 1 856 256 93 47 0 chr6 35627070 35627113 -113889924 - L1Md_Gf LINE L1 -1465 4421 4377 1 856 6530 54 1 22 chr6 35627098 35628125 -113888912 - L1Md_Gf LINE L1 -4485 1401 293 1 856 5317 279 63 12 chr6 35628128 35629587 -113887450 - MTEa-int LTR MaLR -24 1556 23 1 856 1079 216 48 93 chr6 35629593 35629904 -113887133 - MTEa LTR MaLR 0 379 83 1 856 947 238 5 5 chr6 35630013 35630199 -113886838 - B3 SINE B2 -1 215 30 1 856 383 317 136 47 chr6 35630681 35630850 -113886187 - B4A SINE B4 -12 280 97 1 856 414 0 0 0 chr6 35631336 35631382 -113885655 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 856 436 248 132 25 chr6 35632281 35632431 -113884606 - MER5B DNA MER1_type -1 188 1 1 856 315 0 0 0 chr6 35632450 35632485 -113884552 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 856 419 335 32 77 chr6 35632578 35632824 -113884213 - B4A SINE B4 -33 259 25 1 856 286 247 61 61 chr6 35633767 35633866 -113883171 + MER57D LTR ERV1 8 106 -305 1 856 1339 235 77 12 chr6 35634248 35634584 -113882453 + ORR1D2 LTR MaLR 1 358 -12 2 856 21 0 0 0 chr6 35634959 35634980 -113882057 + AT_rich Low_complexity Low_complexity 1 21 0 2 856 668 241 95 35 chr6 35636493 35636831 -113880206 + MTEa LTR MaLR 3 379 0 2 856 1176 265 128 0 chr6 35637174 35637502 -113879535 + ORR1D2 LTR MaLR 1 370 0 2 856 670 261 5 53 chr6 35637687 35637877 -113879160 + B3A SINE B2 2 182 -16 2 856 288 321 38 6 chr6 35638125 35638282 -113878755 - Charlie18a DNA MER1_type -86 256 95 2 856 234 294 127 22 chr6 35638357 35638535 -113878502 + MIRb SINE MIR 62 259 -3 2 856 570 254 122 162 chr6 35638539 35638934 -113878103 - MTE2a LTR MaLR 0 379 1 2 856 225 369 69 0 chr6 35638963 35639096 -113877941 + MIR3 SINE MIR 22 159 -49 2 856 378 0 0 0 chr6 35639630 35639672 -113877365 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 856 669 101 0 0 chr6 35640632 35640731 -113876306 + (TCCCC)n Simple_repeat Simple_repeat 5 103 0 2 856 742 73 0 18 chr6 35640742 35640854 -113876183 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 2 856 536 265 90 81 chr6 35641616 35641964 -113875073 + BGLII_B LTR ERVK 27 395 -27 2 856 225 0 0 0 chr6 35642046 35642071 -113874966 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 2 856 269 338 40 80 chr6 35642280 35642431 -113874606 + MIR SINE MIR 48 192 -70 2 856 280 260 14 14 chr6 35642465 35642539 -113874498 + CT-rich Low_complexity Low_complexity 2 75 0 2 856 432 111 0 0 chr6 35645751 35645823 -113871214 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 856 532 300 121 44 chr6 35645838 35646086 -113870951 - B4 SINE B4 -23 269 3 2 856 2272 104 9 0 chr6 35648325 35648641 -113868396 - ORR1A2 LTR MaLR -8 319 1 2 856 666 135 34 0 chr6 35648741 35648889 -113868148 + GA-rich Low_complexity Low_complexity 4 156 0 2 856 548 236 0 9 chr6 35649386 35649493 -113867544 + PB1D7 SINE Alu 7 112 -8 2 856 315 0 0 0 chr6 35649752 35649787 -113867250 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 856 3421 30 2 0 chr6 35649788 35650183 -113866854 - MTA_Mm LTR MaLR 0 396 1 2 856 4853 43 10 0 chr6 35650183 35650785 -113866252 - MTA_Mm-int LTR MaLR 0 1098 491 2 856 2990 20 0 82 chr6 35650785 35651210 -113865827 - RLTR10 LTR ERVK 0 390 1 2 13 15995 18 16 1 chr6 35651212 35653128 -113863909 - RLTR10-int LTR ERVK -3 1984 41 2 857 2990 20 0 82 chr6 35653138 35653563 -113863474 - RLTR10 LTR ERVK 0 390 1 2 857 4041 34 6 0 chr6 35653563 35654061 -113862976 - MTA_Mm-int LTR MaLR -597 501 1 2 857 3458 28 2 0 chr6 35654061 35654456 -113862581 - MTA_Mm LTR MaLR 0 396 1 2 857 204 40 0 0 chr6 35655150 35655175 -113861862 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2 857 956 333 229 22 chr6 35656265 35657734 -113859303 + L2 LINE L2 1210 2981 -438 2 857 718 164 6 24 chr6 35657735 35657904 -113859133 + CT-rich Low_complexity Low_complexity 3 168 0 2 857 368 310 78 27 chr6 35658016 35658387 -113858650 - L1MA5 LINE L1 -20 6280 5891 2 857 432 67 0 0 chr6 35660083 35660143 -113856894 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 857 722 310 42 52 chr6 35660152 35660441 -113856596 - B4 SINE B4 -6 286 1 2 857 1155 269 108 26 chr6 35660759 35661102 -113855935 - MTEa LTR MaLR 0 379 9 2 857 289 306 23 12 chr6 35661701 35661787 -113855250 + MLT2B3 LTR ERVL 5 91 -463 2 857 1214 266 93 27 chr6 35661801 35662134 -113854903 + ORR1E LTR MaLR 5 359 0 2 857 1078 255 75 30 chr6 35662134 35662401 -113854636 + MTEa LTR MaLR 101 379 0 2 857 578 265 22 15 chr6 35662927 35663061 -113853976 + RSINE1 SINE B4 6 140 -25 2 857 498 33 0 0 chr6 35663064 35663124 -113853913 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 857 26 30 0 0 chr6 35663238 35663271 -113853766 + AT_rich Low_complexity Low_complexity 1 33 0 2 857 2688 10 0 0 chr6 35663868 35664205 -113852832 + L1Md_A LINE L1 6280 6582 0 2 857 24 53 0 0 chr6 35664250 35664288 -113852749 + AT_rich Low_complexity Low_complexity 1 38 0 2 857 605 276 113 44 chr6 35664291 35664681 -113852356 - Lx9 LINE L1 0 7644 7228 2 857 10385 107 86 4 chr6 35665055 35668500 -113848537 - L1Md_F2 LINE L1 0 6582 2619 2 857 2718 52 29 6 chr6 35668504 35668850 -113848187 - IAPEY2_LTR LTR ERVK -3 354 1 2 857 2469 128 41 32 chr6 35668850 35669481 -113847556 - IAPEY3-int LTR ERVK 0 7581 6984 2 857 180 377 44 0 chr6 35669481 35669595 -113847442 - L3b LINE CR1 -29 453 335 2 857 3325 74 9 0 chr6 35669610 35670058 -113846979 - IAPEY3-int LTR ERVK -4991 2689 2238 2 857 8698 128 11 37 chr6 35670035 35671533 -113845504 - IAPEY3-int LTR ERVK -5698 1982 524 2 857 698 154 49 49 chr6 35671532 35671696 -113845341 - IAPLTR4_I LTR ERVK -1290 180 17 2 857 2902 43 6 6 chr6 35671696 35672048 -113844989 - IAPEY2_LTR LTR ERVK -3 354 3 2 857 9963 125 15 33 chr6 35672050 35674507 -113842530 - L1Md_F LINE L1 -3261 2622 208 2 857 31817 71 1 15 chr6 35674545 35679701 -113837336 + L1Md_F2 LINE L1 509 5585 -298 2 857 8079 47 4 0 chr6 35679702 35680682 -113836355 + L1Md_F2 LINE L1 5587 6570 -12 2 857 205 216 20 0 chr6 35681145 35681196 -113835841 + CT-rich Low_complexity Low_complexity 3 54 0 2 857 589 240 6 64 chr6 35681202 35681358 -113835679 - B1F SINE Alu -2 147 1 2 857 385 185 62 0 chr6 35682428 35682509 -113834528 - ORR1B2 LTR MaLR -279 88 3 2 857 287 321 29 54 chr6 35682556 35682700 -113834337 - MIRb SINE MIR -119 157 27 2 857 323 311 107 24 chr6 35683214 35683382 -113833655 + MER20B DNA MER1_type 1 182 -601 2 857 437 325 139 44 chr6 35684627 35684878 -113832159 - B4 SINE B4 -16 276 2 2 857 279 267 59 35 chr6 35685962 35686164 -113830873 - L1M3 LINE L1 -1665 4475 4269 2 857 1146 257 105 19 chr6 35686164 35686700 -113830337 + L1_Mur3 LINE L1 3667 4273 -1867 2 857 536 281 86 15 chr6 35686791 35687131 -113829906 - L1MD LINE L1 -1612 4534 4173 2 857 276 252 41 25 chr6 35687211 35687333 -113829704 - L1MC5 LINE L1 -519 7442 7319 2 857 303 325 0 0 chr6 35687355 35687438 -113829599 - L1MC4 LINE L1 -634 7408 7326 2 857 317 286 75 40 chr6 35687831 35688031 -113829006 - L1MC4 LINE L1 -1030 7012 6806 2 857 369 0 0 0 chr6 35688538 35688579 -113828458 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 857 264 149 0 0 chr6 35688579 35688626 -113828411 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 857 228 182 0 0 chr6 35688752 35688796 -113828241 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 857 321 26 0 0 chr6 35688803 35688841 -113828196 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 857 243 0 0 0 chr6 35691068 35691095 -113825942 + (T)n Simple_repeat Simple_repeat 1 27 0 2 857 772 262 29 0 chr6 35691480 35691686 -113825351 - ID_B1 SINE B4 -10 214 3 2 857 479 17 17 0 chr6 35691952 35692012 -113825025 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 2 857 549 310 92 17 chr6 35692452 35692747 -113824290 + Charlie19a DNA Charlie 37 353 -33 2 857 22 35 0 0 chr6 35692979 35693008 -113824029 + AT_rich Low_complexity Low_complexity 1 29 0 2 857 462 216 79 74 chr6 35693166 35693356 -113823681 - Lx7 LINE L1 -59 7637 7447 2 857 320 155 0 17 chr6 35693493 35693552 -113823485 - Lx7 LINE L1 -1509 6187 6130 2 857 9559 174 40 22 chr6 35693544 35694968 -113822069 - Lx7 LINE L1 -35 5845 4414 2 857 1793 71 8 42 chr6 35694968 35695233 -113821804 + L1Md_F2 LINE L1 6327 6582 0 2 857 9559 174 40 22 chr6 35695233 35695868 -113821169 - Lx7 LINE L1 -1467 4413 3748 2 857 294 265 121 38 chr6 35696130 35696287 -113820750 + B2_Mm2 SINE B2 2 171 -24 2 857 442 352 37 32 chr6 35698071 35698288 -113818749 + B4A SINE B4 1 218 -74 2 857 238 241 37 0 chr6 35699231 35699285 -113817752 + MIRc SINE MIR 83 138 -130 2 857 1423 108 10 0 chr6 35699559 35699763 -113817274 + ORR1A2 LTR MaLR 122 327 0 2 857 1311 138 93 7 chr6 35699763 35700032 -113817005 + ORR1A2-int LTR MaLR 1 299 -1071 2 857 2552 105 79 2 chr6 35700032 35700451 -113816586 - L1_Mm LINE L1 -830 5053 4603 2 857 714 281 47 42 chr6 35700451 35700837 -113816200 - MLT2B2 LTR ERVL -170 384 1 2 857 7391 92 15 4 chr6 35701315 35702356 -113814681 - Lx3_Mus LINE L1 -8 7001 5949 2 857 6195 68 1 12 chr6 35702356 35703298 -113813739 + Lx3_Mus LINE L1 5044 5963 -1046 2 857 21 0 0 0 chr6 35703986 35704007 -113813030 + AT_rich Low_complexity Low_complexity 1 21 0 2 857 313 238 46 37 chr6 35704012 35704121 -113812916 - PB1D10 SINE Alu -7 110 1 2 857 346 317 172 31 chr6 35704671 35705026 -113812011 - LTR83 LTR ERVL -206 574 170 2 857 837 47 0 0 chr6 35705759 35705866 -113811171 - B1_Mm SINE Alu -40 107 1 2 857 186 43 0 0 chr6 35706164 35706187 -113810850 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 857 341 63 0 16 chr6 35706366 35706430 -113810607 - L1Md_F3 LINE L1 -1 6583 6521 2 857 230 322 95 34 chr6 35708075 35708223 -113808814 - ID_B1 SINE B4 -67 157 1 2 857 411 274 42 17 chr6 35708262 35708381 -113808656 - B1F SINE Alu -1 148 27 2 857 315 208 0 0 chr6 35708455 35708508 -113808529 + B3 SINE B2 53 105 -111 2 857 216 265 0 0 chr6 35709518 35709567 -113807470 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 857 570 157 0 73 chr6 35710179 35710371 -113806666 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 857 395 167 0 11 chr6 35710401 35710492 -113806545 + (TG)n Simple_repeat Simple_repeat 1 90 0 2 857 600 322 20 7 chr6 35710492 35710645 -113806392 - RSINE1 SINE B4 0 165 11 2 857 806 265 78 45 chr6 35711002 35711334 -113805703 + RLTR15 LTR ERVK 1 343 -16 2 857 529 215 157 6 chr6 35711355 35711533 -113805504 + MLT1D LTR MaLR 255 459 -46 2 857 508 307 0 20 chr6 35711631 35711784 -113805253 - RSINE1 SINE B4 0 165 16 2 857 180 268 65 93 chr6 35712113 35712220 -113804817 + L4 LINE RTE 569 672 -1357 2 857 349 326 95 7 chr6 35712681 35712987 -113804050 - L1MB2 LINE L1 -5 6166 5834 2 857 240 183 21 128 chr6 35713001 35713095 -113803942 + B3 SINE B2 133 216 0 2 857 350 254 52 60 chr6 35713115 35713367 -113803670 - L1MB2 LINE L1 -391 5780 5529 2 857 2426 165 114 30 chr6 35713399 35713968 -113803069 + RMER6C LTR ERVK 1 617 -73 2 857 334 224 25 0 chr6 35714026 35714127 -113802910 - L1MB2 LINE L1 -718 5450 5347 2 857 639 71 0 0 chr6 35714541 35714626 -113802411 + (TTCC)n Simple_repeat Simple_repeat 1 85 0 2 857 397 303 176 0 chr6 35715391 35715533 -113801504 + B4A SINE B4 112 278 -14 2 857 324 0 0 0 chr6 35715625 35715661 -113801376 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2 857 279 263 66 0 chr6 35715662 35715738 -113801299 + MER97b DNA MER1_type? 973 1053 0 2 857 229 272 15 46 chr6 35715910 35716041 -113800996 + GA-rich Low_complexity Low_complexity 1 127 0 2 857 615 51 0 0 chr6 35716626 35716705 -113800332 + (CATATA)n Simple_repeat Simple_repeat 3 81 0 3 857 465 305 28 22 chr6 35717902 35718080 -113798957 - B3A SINE B2 -16 182 4 3 857 660 141 0 0 chr6 35718230 35718351 -113798686 + (TA)n Simple_repeat Simple_repeat 2 122 0 3 857 672 90 3 0 chr6 35718359 35718455 -113798582 + L1Md_F2 LINE L1 5501 5615 -2170 3 857 7564 58 22 8 chr6 35718455 35719426 -113797611 + L1Md_F2 LINE L1 5587 6570 -12 3 857 307 304 120 36 chr6 35719699 35719924 -113797113 - MLT2D LTR ERVL -158 256 13 3 857 372 328 160 14 chr6 35720256 35720474 -113796563 + MLT1J1 LTR MaLR 2 243 -205 3 857 192 40 0 0 chr6 35720692 35720717 -113796320 + (GGGTG)n Simple_repeat Simple_repeat 4 28 0 3 857 2608 178 33 14 chr6 35721318 35721789 -113795248 - MT2A LTR ERVL -40 544 1 3 857 39114 12 1 7 chr6 35721831 35728446 -113788591 - L1Md_A LINE L1 0 6582 7 3 857 29 60 0 0 chr6 35728673 35728723 -113788314 + AT_rich Low_complexity Low_complexity 1 50 0 3 857 426 279 6 129 chr6 35728812 35729129 -113787908 - Lx9 LINE L1 -7 7637 7360 3 857 258 196 354 20 chr6 35729459 35729558 -113787479 - B1F1 SINE Alu -8 141 10 3 857 26 82 0 0 chr6 35729757 35729818 -113787219 + AT_rich Low_complexity Low_complexity 1 61 0 3 857 1002 217 15 15 chr6 35729828 35730034 -113787003 - B3 SINE B2 -3 213 8 3 857 296 292 57 25 chr6 35730053 35730211 -113786826 + L1MD LINE L1 4752 4914 -1232 3 857 1146 272 51 30 chr6 35730211 35730582 -113786455 - MTE2b LTR MaLR 0 379 1 3 857 370 280 45 31 chr6 35730847 35731072 -113785965 + L1MD LINE L1 5374 5603 -756 3 857 677 278 58 21 chr6 35731373 35731564 -113785473 + MLT1A1 LTR MaLR 211 408 0 3 857 245 309 70 27 chr6 35731566 35731752 -113785285 + L1ME1 LINE L1 5856 6049 -130 3 857 21 36 0 0 chr6 35732142 35732170 -113784867 + AT_rich Low_complexity Low_complexity 1 28 0 3 857 1317 167 14 0 chr6 35732371 35732592 -113784445 - URR1B DNA MER1_type -1 224 1 3 857 430 339 98 0 chr6 35732869 35733146 -113783891 + Lx7 LINE L1 6990 7293 -403 3 857 36 0 0 0 chr6 35733458 35733494 -113783543 + AT_rich Low_complexity Low_complexity 1 36 0 3 857 1624 171 57 47 chr6 35733515 35733862 -113783175 + MTD LTR MaLR 65 407 -12 3 857 579 274 16 48 chr6 35735046 35735234 -113781803 - B3A SINE B2 -15 183 2 3 857 5401 96 30 104 chr6 35736006 35736970 -113780067 + RLTR13B1 LTR ERVK 1 893 0 3 857 445 167 11 11 chr6 35736990 35737081 -113779956 - Lx2B LINE L1 -299 6701 6611 3 857 3105 71 50 0 chr6 35737126 35737546 -113779491 + L1_Mus4 LINE L1 6193 6633 -3 3 857 533 278 17 6 chr6 35737582 35737756 -113779281 + L1_Rod LINE L1 5657 5832 -15 3 857 324 103 0 0 chr6 35737756 35737814 -113779223 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 857 414 234 10 69 chr6 35738191 35738292 -113778745 - PB1D10 SINE Alu 0 117 23 3 857 312 320 52 81 chr6 35738212 35738348 -113778689 - ID_B1 SINE B4 -48 176 45 3 857 979 285 7 33 chr6 35738676 35738952 -113778085 - MTE2b LTR MaLR 0 379 111 3 857 422 271 0 27 chr6 35739587 35739697 -113777340 + ID_B1 SINE B4 118 224 0 3 857 245 152 0 61 chr6 35740754 35740803 -113776234 + Tigger5 DNA MER2_type 284 329 -2077 3 857 604 315 94 13 chr6 35741560 35741878 -113775159 + MLT1F LTR MaLR 200 543 -5 3 857 559 240 32 54 chr6 35742517 35742702 -113774335 - B3A SINE B2 -16 182 2 3 857 195 125 0 0 chr6 35742759 35742799 -113774238 + (T)n Simple_repeat Simple_repeat 1 40 0 3 857 275 89 0 22 chr6 35742841 35742887 -113774150 + RMER3D-int LTR ERVK 2064 2108 -734 3 857 195 42 0 0 chr6 35742887 35742911 -113774126 + (T)n Simple_repeat Simple_repeat 1 24 0 3 857 4409 42 0 0 chr6 35742944 35743471 -113773566 - L1Md_T LINE L1 0 6582 6056 3 857 2466 55 2 0 chr6 35743471 35743972 -113773065 + L1Md_Gf LINE L1 973 1571 -4315 3 857 758 106 203 0 chr6 35744495 35744618 -113772419 - B1_Mus1 SINE Alu 0 148 1 3 857 2158 169 10 51 chr6 35745979 35746373 -113770664 + ORR1C1 LTR MaLR 1 378 0 3 857 476 288 78 89 chr6 35746875 35747157 -113769880 - L2c LINE L2 -5 3382 3104 3 857 844 292 101 38 chr6 35747526 35747921 -113769116 + MLT1D LTR MaLR 65 484 -21 3 857 393 22 0 0 chr6 35748135 35748181 -113768856 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 857 22 0 0 0 chr6 35749571 35749593 -113767444 + AT_rich Low_complexity Low_complexity 1 22 0 3 857 464 335 6 49 chr6 35751237 35751400 -113765637 + MER5B DNA MER1_type 14 169 -9 3 857 365 372 0 0 chr6 35751723 35751836 -113765201 - ID_B1 SINE B4 -28 196 84 3 857 357 335 60 95 chr6 35752001 35752082 -113764955 + B4 SINE B4 1 80 -212 3 857 3939 108 22 0 chr6 35752082 35752663 -113764374 + Lx3B LINE L1 6374 6967 -6 3 857 357 335 60 95 chr6 35752663 35752865 -113764172 + B4 SINE B4 81 274 -18 3 857 287 304 129 39 chr6 35753249 35753438 -113763599 + MIRm SINE MIR 3 196 -12 3 857 274 299 181 0 chr6 35753465 35753592 -113763445 + RSINE1 SINE B4 3 152 -13 3 857 659 105 19 0 chr6 35753689 35753794 -113763243 + (TCTG)n Simple_repeat Simple_repeat 2 108 0 3 857 384 320 75 88 chr6 35755480 35755720 -113761317 + Arthur1 DNA Tip100 54 290 -3657 3 857 1222 279 47 9 chr6 35755758 35756080 -113760957 - ORR1E LTR MaLR -2 357 24 3 857 422 304 0 10 chr6 35756092 35756195 -113760842 - MTE-int LTR MaLR -42 1538 1437 3 857 21 0 0 0 chr6 35756195 35756216 -113760821 + AT_rich Low_complexity Low_complexity 1 21 0 3 857 325 68 0 106 chr6 35756217 35756283 -113760754 - L1_Mus1 LINE L1 -1 6566 6508 3 857 15873 100 8 98 chr6 35756283 35758637 -113758400 - L1_Mm LINE L1 -1892 3991 1693 3 857 534 252 45 59 chr6 35758637 35758849 -113758188 + ORR1D-int LTR MaLR 1144 1428 -81 3 857 15873 100 8 98 chr6 35758849 35759349 -113757688 - L1_Mm LINE L1 -1892 1692 1203 3 857 4363 161 103 8 chr6 35759317 35760251 -113756786 - L1Md_F LINE L1 -5382 1137 115 3 857 2663 263 114 38 chr6 35760271 35761096 -113755941 - MTE-int LTR MaLR -132 1448 561 3 857 360 161 0 0 chr6 35761096 35761177 -113755860 + T-rich Low_complexity Low_complexity 1 81 0 3 857 967 95 73 0 chr6 35761178 35761315 -113755722 - B1_Mm SINE Alu 0 147 1 3 857 770 268 19 55 chr6 35761322 35761579 -113755458 - MTE-int LTR MaLR -834 536 289 3 857 2432 208 47 87 chr6 35761660 35761811 -113755226 - Lx7 LINE L1 -202 7494 7369 3 857 180 0 0 0 chr6 35761811 35761831 -113755206 + (CCAA)n Simple_repeat Simple_repeat 1 20 0 3 857 2432 208 47 87 chr6 35761831 35762383 -113754654 - Lx7 LINE L1 -328 7368 6819 3 857 351 336 19 0 chr6 35762384 35762433 -113754604 - MTE-int LTR MaLR -1235 345 297 3 857 225 0 0 0 chr6 35762433 35762458 -113754579 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 857 339 65 0 0 chr6 35762459 35762505 -113754532 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 857 351 336 19 0 chr6 35762505 35762557 -113754480 - MTE-int LTR MaLR -1284 296 243 3 857 261 0 0 0 chr6 35762651 35762680 -113754357 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 3 857 289 351 0 0 chr6 35762680 35762757 -113754280 - ID SINE ID -142 82 6 3 857 531 0 0 0 chr6 35762776 35762835 -113754202 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 857 249 250 0 0 chr6 35762835 35762891 -113754146 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 857 297 75 0 0 chr6 35762978 35763018 -113754019 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 3 857 666 176 0 20 chr6 35763197 35763348 -113753689 + CT-rich Low_complexity Low_complexity 5 152 0 3 857 186 71 0 0 chr6 35763363 35763391 -113753646 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 3 857 903 251 18 14 chr6 35763391 35763609 -113753428 - B4A SINE B4 -71 221 3 3 857 754 286 48 129 chr6 35764115 35764305 -113752732 + MTE2a LTR MaLR 30 219 -200 3 857 414 0 0 0 chr6 35764305 35764351 -113752686 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 3 857 754 257 58 151 chr6 35764351 35764572 -113752465 + MTE2a LTR MaLR 192 419 0 3 857 263 217 200 0 chr6 35764721 35764781 -113752256 - ORR1E LTR MaLR -287 72 1 3 857 1527 207 86 13 chr6 35765267 35765328 -113751709 - MTD LTR MaLR -5 414 354 3 857 729 0 0 0 chr6 35765328 35765409 -113751628 + (TTTCC)n Simple_repeat Simple_repeat 1 81 0 3 857 1527 207 86 13 chr6 35765409 35765733 -113751304 - MTD LTR MaLR -66 353 2 3 857 348 235 78 10 chr6 35767560 35767663 -113749374 - PB1D10 SINE Alu -7 110 1 3 857 431 320 20 0 chr6 35768150 35768300 -113748737 - RSINE1 SINE B4 -12 153 1 3 857 232 256 157 36 chr6 35769086 35769252 -113747785 - Lx7 LINE L1 -4 7692 7507 3 857 930 283 78 44 chr6 35769296 35769836 -113747201 - Lx9 LINE L1 -27 7617 7060 3 857 845 302 60 3 chr6 35770041 35770343 -113746694 - Lx9 LINE L1 -610 7034 6716 3 857 27 0 0 0 chr6 35771120 35771147 -113745890 + AT_rich Low_complexity Low_complexity 1 27 0 3 857 401 287 67 42 chr6 35772138 35772150 -113744887 - B4 SINE B4 -162 130 121 3 857 501 17 0 0 chr6 35772150 35772208 -113744829 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 857 401 287 67 42 chr6 35772208 35772315 -113744722 - B4 SINE B4 -172 120 8 3 857 22 35 0 0 chr6 35772571 35772600 -113744437 + AT_rich Low_complexity Low_complexity 1 29 0 3 857 22 35 0 0 chr6 35772802 35772831 -113744206 + AT_rich Low_complexity Low_complexity 1 29 0 3 857 243 291 0 55 chr6 35773829 35773920 -113743117 - ORR1E LTR MaLR -19 360 275 3 857 490 311 22 7 chr6 35774033 35774169 -113742868 - ORR1E LTR MaLR -220 139 2 3 857 325 291 43 86 chr6 35775397 35775536 -113741501 - MLT1A1 LTR MaLR -8 400 268 3 857 21 0 0 0 chr6 35777212 35777233 -113739804 + AT_rich Low_complexity Low_complexity 1 21 0 3 857 253 276 143 45 chr6 35777233 35777671 -113739366 - Arthur1 DNA Tip100 -16 3931 3436 3 857 784 346 59 12 chr6 35777784 35778188 -113738849 - Lx8 LINE L1 -146 7327 6905 3 857 565 164 8 8 chr6 35778188 35778305 -113738732 + CT-rich Low_complexity Low_complexity 2 118 0 3 857 7463 221 53 38 chr6 35778312 35781226 -113735811 - Lx5 LINE L1 -18 7032 4072 3 857 323 265 1 11 chr6 35781247 35781353 -113735684 - Lx8 LINE L1 -555 6918 6813 3 857 342 61 0 0 chr6 35781495 35781544 -113735493 + (CAAAC)n Simple_repeat Simple_repeat 1 49 0 3 857 216 0 0 0 chr6 35781549 35781573 -113735464 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 3 857 1028 265 23 43 chr6 35781784 35782178 -113734859 - Lx9 LINE L1 -378 7266 6881 3 857 257 261 44 33 chr6 35782182 35782273 -113734764 + Lx9 LINE L1 7341 7432 -212 3 857 639 315 89 50 chr6 35782374 35782425 -113734612 - Arthur1 DNA Tip100 -2707 1240 1195 3 857 341 347 7 13 chr6 35782425 35782574 -113734463 - B1_Mur1 SINE Alu -1 148 1 4 107 639 315 89 50 chr6 35782574 35782926 -113734111 - Arthur1 DNA Tip100 -2753 1194 821 3 858 743 386 42 37 chr6 35783094 35783476 -113733561 - Arthur1 DNA Tip100 -3400 547 164 3 858 254 294 11 23 chr6 35783602 35783689 -113733348 + CT-rich Low_complexity Low_complexity 1 86 0 4 858 376 269 64 11 chr6 35784512 35784606 -113732431 - B1F SINE Alu -41 108 10 4 858 3071 273 67 91 chr6 35785278 35786598 -113730439 + Lx5 LINE L1 5740 7028 -22 4 858 201 180 0 0 chr6 35786679 35786729 -113730308 + A-rich Low_complexity Low_complexity 1 50 0 4 858 243 365 47 23 chr6 35788707 35788836 -113728201 - Kanga1c DNA Tc2 -526 203 72 4 858 3267 38 2 10 chr6 35789134 35789533 -113727504 - MTA_Mm LTR MaLR 0 396 1 4 858 355 285 63 46 chr6 35789716 35789955 -113727082 - L1M5 LINE L1 -301 5823 5581 4 858 955 71 21 0 chr6 35790642 35790782 -113726255 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 4 858 1185 56 0 0 chr6 35790785 35790928 -113726109 - B1_Mus1 SINE Alu -4 144 2 4 858 623 134 8 0 chr6 35792148 35792267 -113724770 + (TTAGGG)n Simple_repeat Simple_repeat 6 125 0 4 858 3571 202 65 8 chr6 35792368 35792996 -113724041 - Lx5 LINE L1 -8 7042 6369 4 858 2281 36 4 0 chr6 35792996 35793270 -113723767 - L1Md_F2 LINE L1 -1 6581 6307 4 858 3571 202 65 8 chr6 35793270 35793437 -113723600 - Lx5 LINE L1 -682 6368 6201 4 858 524 256 31 16 chr6 35795147 35795274 -113721763 - RSINE1 SINE B4 -34 131 3 4 858 333 312 0 11 chr6 35795760 35795854 -113721183 + CT-rich Low_complexity Low_complexity 3 95 0 4 858 1562 68 63 0 chr6 35796063 35796284 -113720753 - L1_Mus2 LINE L1 -392 6174 5940 4 858 3016 60 21 3 chr6 35796284 35796672 -113720365 + L1_Mus2 LINE L1 6172 6566 0 4 858 210 37 0 0 chr6 35796692 35796719 -113720318 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 858 252 0 0 0 chr6 35797073 35797101 -113719936 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 858 327 104 0 0 chr6 35797458 35797506 -113719531 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 858 219 69 0 0 chr6 35797529 35797558 -113719479 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4 858 1102 57 43 0 chr6 35797559 35797699 -113719338 - B1_Mm SINE Alu 0 147 2 4 858 788 271 0 16 chr6 35799264 35799448 -113717589 - B3A SINE B2 -16 182 2 4 858 534 31 0 0 chr6 35800628 35800692 -113716345 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 858 356 342 33 16 chr6 35800692 35800814 -113716223 - RSINE1 SINE B4 -41 124 1 4 858 627 236 151 16 chr6 35801451 35801604 -113715433 + B3 SINE B2 5 167 -49 4 858 315 0 0 0 chr6 35801604 35801639 -113715398 + (CATA)n Simple_repeat Simple_repeat 4 38 0 4 858 627 236 151 16 chr6 35801639 35801670 -113715367 + B3 SINE B2 168 213 -3 4 858 288 343 28 0 chr6 35801782 35801890 -113715147 - L2 LINE L2 -338 3081 2971 4 858 230 248 113 87 chr6 35802465 35802615 -113714422 + L1M5 LINE L1 5537 5690 -434 4 858 212 204 36 36 chr6 35804321 35804377 -113712660 + (CATG)n Simple_repeat Simple_repeat 4 59 0 4 858 265 324 0 14 chr6 35804449 35804518 -113712519 - RSINE1 SINE B4 -96 69 2 4 858 824 61 0 9 chr6 35804627 35804743 -113712294 + (GAA)n Simple_repeat Simple_repeat 1 115 0 4 858 379 348 72 78 chr6 35804870 35805063 -113711974 + B4 SINE B4 74 265 -27 4 858 969 134 87 27 chr6 35805104 35805288 -113711749 + B2_Mm2 SINE B2 1 195 0 4 858 219 83 61 20 chr6 35805567 35805616 -113711421 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 858 349 250 80 36 chr6 35806985 35807097 -113709940 - B3A SINE B2 0 198 82 4 858 239 269 97 0 chr6 35807283 35807376 -113709661 - LTR39 LTR ERV1 -275 508 407 4 858 1256 179 4 18 chr6 35809943 35810171 -113706866 - URR1B DNA MER1_type 0 225 1 4 858 1859 198 13 21 chr6 35810361 35810738 -113706299 - ORR1D1 LTR MaLR 0 374 1 4 858 433 344 50 20 chr6 35811173 35811372 -113705665 - MER58A DNA MER1_type -16 208 4 4 858 336 267 44 164 chr6 35811426 35811811 -113705226 + L1MA6 LINE L1 4800 5138 -1005 4 858 337 340 24 130 chr6 35811811 35811980 -113705057 - MTEa LTR MaLR -226 153 3 4 858 595 243 137 20 chr6 35812038 35812344 -113704693 + L1MA6 LINE L1 5959 6300 0 4 858 248 344 206 34 chr6 35812746 35813573 -113703464 + L2 LINE L2 2095 3063 -356 4 858 846 30 0 0 chr6 35813910 35814011 -113703026 + (CAG)n Simple_repeat Simple_repeat 2 102 0 4 858 27 29 0 0 chr6 35815138 35815172 -113701865 + AT_rich Low_complexity Low_complexity 1 34 0 4 858 385 298 141 69 chr6 35815427 35815845 -113701192 - MLT1H2 LTR MaLR -8 481 34 4 858 251 276 122 87 chr6 35815851 35815966 -113701071 - B1F SINE Alu -5 144 26 4 858 3192 60 0 7 chr6 35816024 35816447 -113700590 - L1_Mus1 LINE L1 -281 6286 5867 4 858 2202 47 7 4 chr6 35816447 35816723 -113700314 + L1_Mus1 LINE L1 6289 6565 -2 4 858 538 346 18 53 chr6 35816786 35817070 -113699967 + MLT1B LTR MaLR 29 302 -88 4 858 475 242 11 0 chr6 35817123 35817218 -113699819 - MLT1B LTR MaLR -2 388 293 4 858 232 231 22 124 chr6 35817886 35817975 -113699062 + RLTR33 LTR ERVK 450 529 -149 4 858 239 274 11 56 chr6 35818161 35818250 -113698787 + PB1D10 SINE Alu 29 113 -4 4 858 303 314 61 54 chr6 35819206 35819354 -113697683 + MLT1A0 LTR MaLR 14 162 -203 4 858 362 281 23 23 chr6 35819370 35819501 -113697536 + MLT1A0 LTR MaLR 210 340 -25 4 858 468 0 0 0 chr6 35820264 35820316 -113696721 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 858 401 302 18 36 chr6 35820322 35820432 -113696605 - RSINE1 SINE B4 -48 117 10 4 858 602 283 51 9 chr6 35820453 35820667 -113696370 - ID_B1 SINE B4 -1 223 1 4 858 379 309 134 50 chr6 35821378 35821433 -113695604 - Lx8 LINE L1 -310 7163 7109 4 858 2670 92 30 8 chr6 35821433 35821827 -113695210 + RLTR9D LTR ERVK 1 403 0 4 858 379 309 134 50 chr6 35821827 35822129 -113694908 - Lx8 LINE L1 -365 7108 6777 4 858 1158 228 101 90 chr6 35822137 35822503 -113694534 + ORR1D2 LTR MaLR 1 370 0 4 858 21 36 0 0 chr6 35823211 35823239 -113693798 + AT_rich Low_complexity Low_complexity 1 28 0 4 858 1128 226 5 0 chr6 35823241 35823445 -113693592 - B3 SINE B2 -11 205 1 4 858 231 392 0 0 chr6 35824871 35824968 -113692069 + MIR SINE MIR 43 139 -69 4 858 558 253 103 33 chr6 35825351 35825535 -113691502 - B3 SINE B2 -17 199 3 4 858 237 132 0 0 chr6 35826448 35826486 -113690551 + (T)n Simple_repeat Simple_repeat 1 38 0 4 858 378 317 28 0 chr6 35827055 35827200 -113689837 - L1MC4 LINE L1 -2891 3323 3175 4 858 745 290 72 84 chr6 35827356 35827691 -113689346 + MLT1A LTR MaLR 39 369 -5 4 858 895 302 13 92 chr6 35827870 35828047 -113688990 - B4A SINE B4 -2 290 127 4 858 1662 139 96 70 chr6 35828047 35828233 -113688804 - ORR1B2 LTR MaLR 0 367 171 4 858 954 26 0 0 chr6 35828233 35828346 -113688691 + (GA)n Simple_repeat Simple_repeat 1 113 0 4 858 1662 139 96 70 chr6 35828346 35828515 -113688522 - ORR1B2 LTR MaLR -197 170 3 4 858 895 302 13 92 chr6 35828515 35828651 -113688386 - B4A SINE B4 -166 126 2 4 858 346 310 130 40 chr6 35828822 35829145 -113687892 - L1MC4 LINE L1 -3729 2486 2135 4 858 6366 37 3 0 chr6 35830117 35830900 -113686137 - L1Md_F2 LINE L1 0 6582 5804 4 858 21 0 0 0 chr6 35831457 35831478 -113685559 + AT_rich Low_complexity Low_complexity 1 21 0 4 858 420 329 60 18 chr6 35831508 35831675 -113685362 - B4A SINE B4 -15 277 104 4 858 254 245 216 31 chr6 35831652 35831749 -113685288 - B3A SINE B2 -81 117 3 4 858 609 261 0 7 chr6 35831804 35831939 -113685098 - B3 SINE B2 -82 134 1 4 858 233 320 26 13 chr6 35832488 35832564 -113684473 + RLTR33 LTR ERVK 517 593 -85 4 858 405 343 84 58 chr6 35832775 35833119 -113683918 - L1MC4 LINE L1 -5561 654 302 4 858 198 0 0 0 chr6 35833259 35833281 -113683756 + (T)n Simple_repeat Simple_repeat 1 22 0 4 858 663 209 59 26 chr6 35833755 35833907 -113683130 + ORR1E LTR MaLR 1 157 -202 4 858 2444 188 83 18 chr6 35833908 35834423 -113682614 - RMER15 LTR ERVL 0 575 27 4 858 302 141 28 0 chr6 35834607 35834678 -113682359 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 4 858 635 147 161 32 chr6 35834700 35834855 -113682182 + ORR1E LTR MaLR 195 369 -1 4 858 230 269 15 15 chr6 35835404 35835472 -113681565 - MTEa LTR MaLR 0 379 312 4 858 453 36 0 0 chr6 35835472 35835527 -113681510 + (TTA)n Simple_repeat Simple_repeat 3 57 0 4 858 3445 80 2 0 chr6 35835527 35835966 -113681071 - L1_Mus1 LINE L1 -11 6556 6117 4 858 1109 291 76 0 chr6 35835978 35836280 -113680757 - MTEa LTR MaLR -54 325 1 4 858 495 0 0 0 chr6 35837162 35837217 -113679820 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 858 207 220 0 0 chr6 35838244 35838294 -113678743 + GA-rich Low_complexity Low_complexity 2 51 0 4 858 1929 181 96 16 chr6 35838624 35839112 -113677925 + RLTR11A2 LTR ERVK 1 527 0 4 858 27 62 0 0 chr6 35839655 35839703 -113677334 + AT_rich Low_complexity Low_complexity 1 48 0 4 858 235 24 0 87 chr6 35839907 35839953 -113677084 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 4 858 959 37 36 29 chr6 35840157 35840297 -113676740 - L1Md_F3 LINE L1 0 6584 6444 4 858 517 26 0 0 chr6 35840297 35840367 -113676670 + L1Md_F3 LINE L1 5811 5880 -687 4 858 617 274 32 0 chr6 35841295 35841419 -113675618 + RSINE1 SINE B4 18 145 -20 4 858 1232 116 16 11 chr6 35841419 35841610 -113675427 - B2_Mm2 SINE B2 -3 192 1 4 858 198 191 0 0 chr6 35841629 35841671 -113675366 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 4 858 213 39 0 0 chr6 35842657 35842683 -113674354 + (CAA)n Simple_repeat Simple_repeat 3 28 0 4 858 204 175 25 0 chr6 35842732 35842772 -113674265 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 858 4192 29 0 1 chr6 35842892 35843476 -113673561 - L1Md_F2 LINE L1 -656 5926 5345 4 858 3557 24 7 0 chr6 35843480 35843897 -113673140 + L1Md_F2 LINE L1 6162 6581 -1 4 858 488 208 52 52 chr6 35843999 35844050 -113672987 + Lx9 LINE L1 7416 7476 -168 4 858 534 31 0 0 chr6 35844050 35844114 -113672923 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 858 488 208 52 52 chr6 35844114 35844275 -113672762 + Lx9 LINE L1 7477 7628 -16 4 858 2561 3 3 0 chr6 35845428 35845717 -113671320 - L1Md_T LINE L1 0 6582 6293 4 858 467 268 124 5 chr6 35845905 35846115 -113670922 + Charlie1a DNA MER1_type 474 708 -747 4 858 1160 260 75 40 chr6 35846371 35846720 -113670317 + MTE2b LTR MaLR 19 379 0 4 858 251 209 0 0 chr6 35848872 35848915 -113668122 + MER5A DNA MER1_type 4 46 -143 5 858 288 344 102 39 chr6 35848955 35849209 -113667828 + L4 LINE RTE 1294 1563 -466 5 858 644 296 121 23 chr6 35849895 35850151 -113666886 + B4 SINE B4 2 282 -10 5 858 24 0 0 0 chr6 35850514 35850538 -113666499 + AT_rich Low_complexity Low_complexity 1 24 0 5 858 2171 169 56 0 chr6 35850631 35851004 -113666033 + ORR1B1 LTR MaLR 1 394 0 5 858 3072 114 45 9 chr6 35851051 35851518 -113665519 + Lx2 LINE L1 6513 6996 -1 5 858 206 121 0 0 chr6 35851524 35851557 -113665480 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 5 858 2666 237 55 28 chr6 35851863 35852665 -113664372 - Lx6 LINE L1 -21 7439 6257 5 858 249 33 0 0 chr6 35852735 35852765 -113664272 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 858 185 224 17 0 chr6 35852949 35853007 -113664030 + CT-rich Low_complexity Low_complexity 6 64 0 5 858 429 382 21 0 chr6 35853111 35853255 -113663782 - LTR78 LTR ERV1 -813 491 345 5 858 378 0 0 0 chr6 35854031 35854073 -113662964 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 858 23 0 0 0 chr6 35855393 35855416 -113661621 + AT_rich Low_complexity Low_complexity 1 23 0 5 858 941 280 65 54 chr6 35855778 35855850 -113661187 - B4 SINE B4 -4 288 214 5 858 1201 62 0 0 chr6 35855850 35855996 -113661041 + B1_Mm SINE Alu 2 147 0 5 858 941 280 65 54 chr6 35855996 35856202 -113660835 - B4 SINE B4 -79 213 7 5 858 183 304 50 71 chr6 35856251 35856350 -113660687 + L3 LINE CR1 2132 2228 -2261 5 858 23 33 0 0 chr6 35857027 35857057 -113659980 + AT_rich Low_complexity Low_complexity 1 30 0 5 858 647 313 66 85 chr6 35857517 35857880 -113659157 + ORR1E LTR MaLR 2 357 -2 5 858 987 156 6 6 chr6 35858232 35858400 -113658637 + URR1A DNA MER1_type 59 226 0 5 858 307 295 123 8 chr6 35858555 35858685 -113658352 + Kanga1b DNA Tc2 121 265 -514 5 858 402 323 65 79 chr6 35858778 35859118 -113657919 + Kanga1b DNA Tc2 445 779 0 5 858 459 0 0 0 chr6 35860306 35860357 -113656680 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 858 1051 92 0 0 chr6 35860673 35860815 -113656222 + B1_Mus1 SINE Alu 1 142 -6 5 858 3535 41 11 9 chr6 35860835 35861277 -113655760 - L1Md_F3 LINE L1 0 6584 6142 5 858 489 200 29 94 chr6 35862359 35862497 -113654540 + MTEb LTR MaLR 25 153 -226 5 858 22 0 0 0 chr6 35863186 35863208 -113653829 + AT_rich Low_complexity Low_complexity 1 22 0 5 858 837 274 10 15 chr6 35863663 35863867 -113653170 - B3 SINE B2 0 216 14 5 858 231 36 0 0 chr6 35864479 35864507 -113652530 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 5 858 304 353 39 0 chr6 35864532 35864634 -113652403 - RSINE1 SINE B4 -55 110 5 5 858 538 239 125 14 chr6 35865225 35865369 -113651668 - RSINE1 SINE B4 -2 163 4 5 858 892 103 7 14 chr6 35865372 35865520 -113651517 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 5 858 6568 38 1 0 chr6 35865743 35866527 -113650510 + L1Md_T LINE L1 5796 6580 -2 5 858 21409 64 4 5 chr6 35866786 35869011 -113648026 - L1Md_F2 LINE L1 -6 6576 4358 5 858 2667 38 3 0 chr6 35869011 35869331 -113647706 - L1Md_T LINE L1 -2 6580 6260 5 858 21409 75 6 7 chr6 35869331 35870878 -113646159 - L1Md_F2 LINE L1 -1526 4357 2810 5 858 829 87 165 0 chr6 35873430 35873557 -113643480 + B1_Mus1 SINE Alu 1 148 0 5 858 333 0 0 0 chr6 35873557 35873594 -113643443 + (A)n Simple_repeat Simple_repeat 1 37 0 5 858 5963 31 12 0 chr6 35875967 35876709 -113640328 - L1Md_F2 LINE L1 -245 6337 5587 5 858 15238 58 7 0 chr6 35877128 35879483 -113637554 - L1Md_F2 LINE L1 -403 6179 3807 5 858 1306 24 48 0 chr6 35879483 35879651 -113637386 + L1Md_F2 LINE L1 6407 6582 0 5 858 272 213 27 0 chr6 35880483 35880558 -113636479 + G-rich Low_complexity Low_complexity 5 81 0 5 858 334 275 103 55 chr6 35880609 35880755 -113636282 + HAL1-3A_ME LINE L1 2286 2438 -420 5 858 282 160 0 0 chr6 35880755 35880805 -113636232 + GA-rich Low_complexity Low_complexity 2 51 0 5 858 182 292 0 0 chr6 35881165 35881213 -113635824 + L2a LINE L2 3374 3421 -5 5 858 229 239 28 132 chr6 35881371 35881477 -113635560 - MLT1B LTR MaLR -24 366 272 5 858 411 145 0 0 chr6 35881531 35881614 -113635423 + (TG)n Simple_repeat Simple_repeat 1 83 0 5 858 15110 4 0 0 chr6 35883185 35884958 -113632079 + L1Md_A LINE L1 3814 5586 -297 5 858 8882 12 0 0 chr6 35884958 35885989 -113631048 + L1Md_A LINE L1 5587 6582 0 5 858 222 37 0 0 chr6 35886707 35886734 -113630303 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 858 1358 41 0 0 chr6 35888682 35888854 -113628183 - L1Md_F2 LINE L1 -616 5966 5795 5 858 417 288 48 45 chr6 35889079 35889112 -113627925 + L1_Mur3 LINE L1 5259 5287 -593 5 858 3541 81 6 0 chr6 35889112 35889579 -113627458 + L1_Mus3 LINE L1 6165 6634 -4 5 858 417 288 48 45 chr6 35889579 35889814 -113627223 + L1_Mur3 LINE L1 5288 5527 -353 5 858 1351 234 60 74 chr6 35890054 35890419 -113626618 + ORR1D1 LTR MaLR 4 363 -11 5 858 2257 22 11 4 chr6 35890449 35890759 -113626278 - L1Md_F3 LINE L1 0 6584 6280 5 858 453 339 31 71 chr6 35892729 35892983 -113624054 + Lx8 LINE L1 7041 7284 -189 5 858 324 102 0 0 chr6 35893073 35893122 -113623915 + (TAA)n Simple_repeat Simple_repeat 3 51 0 5 858 191 178 111 0 chr6 35893740 35893785 -113623252 + L3 LINE CR1 2781 2830 -1659 5 858 288 0 0 0 chr6 35894907 35894939 -113622098 + (TGG)n Simple_repeat Simple_repeat 1 32 0 5 858 522 0 0 0 chr6 35894950 35895008 -113622029 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 5 858 715 11 11 11 chr6 35896238 35896331 -113620706 + (TTC)n Simple_repeat Simple_repeat 2 94 0 5 858 570 137 0 0 chr6 35896364 35896459 -113620578 + (TC)n Simple_repeat Simple_repeat 2 96 0 5 858 522 285 38 38 chr6 35896509 35896695 -113620342 - Lx4B LINE L1 -58 7000 6815 5 858 13750 70 1 0 chr6 35896697 35898611 -113618426 - L1_Mm LINE L1 -1956 3927 2013 5 858 3242 32 0 10 chr6 35898611 35899020 -113618017 + L1Md_F2 LINE L1 5182 5586 -297 5 858 8060 53 0 2 chr6 35899020 35900016 -113617021 + L1Md_F2 LINE L1 5587 6580 -2 5 858 399 211 18 44 chr6 35900036 35900150 -113616887 - Lx4B LINE L1 -240 6818 6708 5 858 427 319 8 0 chr6 35900886 35901005 -113616032 + B4A SINE B4 165 284 -8 5 858 408 20 0 0 chr6 35901012 35901061 -113615976 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 858 351 0 0 0 chr6 35902783 35902822 -113614215 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 858 207 0 0 0 chr6 35902822 35902844 -113614193 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 858 495 48 0 0 chr6 35903056 35903118 -113613919 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 858 1379 95 0 5 chr6 35903231 35903421 -113613616 + B2_Mm2 SINE B2 2 190 -5 5 858 1100 103 0 0 chr6 35903428 35903574 -113613463 + B1_Mus2 SINE Alu 2 147 0 5 858 1562 222 111 3 chr6 35903593 35903945 -113613092 + MTC LTR MaLR 32 421 0 5 858 660 147 7 14 chr6 35905048 35905186 -113611851 + (TA)n Simple_repeat Simple_repeat 2 138 0 5 858 325 0 25 0 chr6 35905186 35905226 -113611811 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 858 232 333 16 16 chr6 35905226 35905290 -113611747 - ID4_ SINE ID -6 77 14 5 858 462 200 0 0 chr6 35905308 35905378 -113611659 - ID4_ SINE ID -3 80 11 5 858 351 335 61 42 chr6 35905874 35906115 -113610922 + MLT1J2 LTR MaLR 47 290 -154 5 858 383 346 133 27 chr6 35906373 35906865 -113610172 - L2a LINE L2 0 3426 2881 5 858 408 20 0 0 chr6 35907220 35907269 -113609768 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 858 479 246 58 35 chr6 35907269 35907431 -113609606 + MER58A DNA MER1_type 58 223 -1 5 858 259 343 37 57 chr6 35907625 35907818 -113609219 - MIR3 SINE MIR -18 190 6 5 107 39047 11 1 7 chr6 35908895 35915084 -113601953 - L1Md_A LINE L1 0 6582 438 5 859 318 198 10 29 chr6 35915179 35915283 -113601754 + (CATATA)n Simple_repeat Simple_repeat 4 105 0 5 859 3392 28 2 5 chr6 35915288 35915685 -113601352 - MTA_Mm LTR MaLR 0 396 1 5 859 21 36 0 0 chr6 35915795 35915823 -113601214 + AT_rich Low_complexity Low_complexity 1 28 0 5 859 301 271 15 0 chr6 35915983 35916116 -113600921 + CT-rich Low_complexity Low_complexity 4 138 0 5 859 257 292 45 0 chr6 35916134 35916223 -113600814 - MLT1A1 LTR MaLR -74 334 242 5 859 352 320 143 14 chr6 35917159 35917368 -113599669 - L2c LINE L2 -78 3309 3074 5 859 666 290 30 0 chr6 35917685 35917851 -113599186 + B4A SINE B4 61 231 -61 5 859 616 189 0 86 chr6 35917851 35917990 -113599047 + B1_Mur1 SINE Alu 1 127 -22 5 859 32 26 0 0 chr6 35918315 35918354 -113598683 + AT_rich Low_complexity Low_complexity 1 39 0 5 859 869 264 21 5 chr6 35919526 35919720 -113597317 - B3 SINE B2 0 216 20 5 859 1594 127 12 0 chr6 35920289 35920533 -113596504 - MT2B LTR ERVL 0 601 355 5 859 216 0 0 0 chr6 35920533 35920557 -113596480 + (CAG)n Simple_repeat Simple_repeat 1 24 0 5 859 603 147 0 0 chr6 35920555 35920657 -113596380 + (GGAGAA)n Simple_repeat Simple_repeat 6 107 0 5 859 2044 148 40 51 chr6 35920657 35921032 -113596005 - MT2B LTR ERVL -241 360 1 5 859 548 318 123 19 chr6 35921637 35921897 -113595140 + B4A SINE B4 1 287 -5 5 859 387 83 0 0 chr6 35922227 35922287 -113594750 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 859 360 0 0 0 chr6 35922287 35922327 -113594710 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 859 694 171 31 8 chr6 35923158 35923288 -113593749 - ORR1C2 LTR MaLR -8 376 244 5 859 596 292 60 112 chr6 35923936 35924302 -113592735 + MLT1A LTR MaLR 13 359 -15 5 859 1178 39 58 0 chr6 35924413 35924568 -113592469 - L1_Mus1 LINE L1 -682 5885 5722 5 859 4558 61 4 0 chr6 35924568 35925129 -113591908 + L1_Mus1 LINE L1 6005 6567 0 5 859 189 0 0 0 chr6 35925132 35925153 -113591884 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 859 901 199 61 11 chr6 35925153 35925200 -113591837 - Lx2 LINE L1 -1276 5721 5636 5 859 2430 248 67 101 chr6 35925674 35927323 -113589714 + RMER1A Other Other 1 1030 0 6 859 862 222 122 191 chr6 35928353 35928803 -113588234 - MTD LTR MaLR 0 419 1 6 859 189 384 103 26 chr6 35928938 35929093 -113587944 + MIR3 SINE MIR 3 169 -39 6 859 198 103 0 0 chr6 35929795 35929824 -113587213 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 859 36 40 0 0 chr6 35929973 35930023 -113587014 + AT_rich Low_complexity Low_complexity 1 50 0 6 859 1138 82 0 0 chr6 35930658 35930805 -113586232 + B1_Mm SINE Alu 1 147 0 6 859 1211 42 0 0 chr6 35930838 35930981 -113586056 + B1_Mm SINE Alu 2 144 -3 6 859 32034 45 13 42 chr6 35930983 35932846 -113584191 + L1Md_A LINE L1 643 2461 -3422 6 859 8920 4 0 0 chr6 35932846 35933827 -113583210 + L1Md_T LINE L1 5602 6582 0 6 859 32034 36 19 32 chr6 35933827 35936300 -113580737 + L1Md_A LINE L1 2462 4938 -945 6 859 225 183 46 77 chr6 35936300 35936365 -113580672 - RMER20A LTR ERVK -268 248 186 6 859 32034 36 19 32 chr6 35936365 35937010 -113580027 + L1Md_A LINE L1 4939 5586 -297 6 859 7910 53 1 7 chr6 35937010 35938011 -113579026 + L1Md_F2 LINE L1 5587 6581 -1 6 859 234 167 0 0 chr6 35938024 35938084 -113578953 + A-rich Low_complexity Low_complexity 1 60 0 6 859 726 296 87 7 chr6 35938262 35938687 -113578350 + L1MA4 LINE L1 5445 5903 -397 6 859 1359 290 107 8 chr6 35940279 35940894 -113576143 - Lx8 LINE L1 -5 7468 6776 6 859 292 368 70 31 chr6 35940905 35941132 -113575905 + Charlie8 DNA MER1_type 82 317 -2111 6 859 405 0 0 0 chr6 35941739 35941784 -113575253 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 859 218 57 0 54 chr6 35941787 35941824 -113575213 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 6 859 246 347 35 5 chr6 35942492 35942692 -113574345 + L1M4c LINE L1 1264 1469 -4915 6 859 1817 19 0 0 chr6 35943144 35943359 -113573678 + L1Md_A LINE L1 5372 5586 -297 6 859 8486 26 2 0 chr6 35943359 35944351 -113572686 + L1Md_A LINE L1 5587 6580 -2 6 859 450 0 0 0 chr6 35944655 35944705 -113572332 + (A)n Simple_repeat Simple_repeat 1 50 0 6 859 259 320 19 13 chr6 35944720 35944875 -113572162 + L1M4c LINE L1 2857 3012 -3370 6 859 569 326 21 32 chr6 35944875 35945096 -113571941 + B3A SINE B2 1 216 0 6 859 229 215 146 31 chr6 35945100 35945196 -113571841 + Lx8 LINE L1 7363 7469 -4 6 859 25 31 0 0 chr6 35945361 35945393 -113571644 + AT_rich Low_complexity Low_complexity 1 32 0 6 859 3040 72 12 5 chr6 35945775 35946193 -113570844 + BGLII LTR ERVK 1 421 0 6 859 559 304 87 18 chr6 35946340 35946735 -113570302 + L1M4c LINE L1 4063 4485 -1897 6 859 555 281 105 70 chr6 35946859 35947372 -113569665 - MT2A LTR ERVL -2 531 1 6 859 398 315 54 18 chr6 35947393 35947657 -113569380 + L1M4c LINE L1 4675 4951 -1431 6 859 731 82 27 0 chr6 35947682 35947792 -113569245 + (TATATG)n Simple_repeat Simple_repeat 2 114 0 6 859 53 57 0 0 chr6 35949005 35949093 -113567944 + AT_rich Low_complexity Low_complexity 1 88 0 6 859 222 354 62 10 chr6 35949574 35949671 -113567366 - MER5B DNA MER1_type -54 124 23 6 859 270 0 0 0 chr6 35951717 35951747 -113565290 + (TGG)n Simple_repeat Simple_repeat 2 31 0 6 859 2977 158 30 53 chr6 35951830 35952393 -113564644 - RMER15 LTR ERVL -25 550 1 6 859 220 303 63 31 chr6 35952903 35953094 -113563943 - L2c LINE L2 -51 3375 3183 6 859 644 190 35 0 chr6 35953279 35953395 -113563642 + RSINE1 SINE B4 1 120 -45 6 859 234 116 0 0 chr6 35953402 35953445 -113563592 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 859 867 94 0 0 chr6 35953471 35953598 -113563439 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 6 859 378 0 0 0 chr6 35954292 35954334 -113562703 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 859 271 277 110 62 chr6 35955303 35955449 -113561588 - MIR3 SINE MIR -12 196 44 6 859 1984 132 48 3 chr6 35959955 35960266 -113556771 - ORR1A2 LTR MaLR -2 325 1 6 859 10625 149 53 17 chr6 35960266 35962161 -113554876 - ORR1A2-int LTR MaLR 0 1963 1 6 859 2234 114 9 3 chr6 35962161 35962486 -113554551 - ORR1A2 LTR MaLR 0 327 1 6 859 1070 125 6 0 chr6 35962977 35963153 -113553884 + (GGAGAA)n Simple_repeat Simple_repeat 2 178 0 6 859 340 333 0 18 chr6 35963987 35964100 -113552937 - MER5A1 DNA MER1_type -3 163 53 6 859 301 310 130 17 chr6 35965228 35965405 -113551632 - L1M5 LINE L1 -317 5807 5611 6 859 25 31 0 0 chr6 35966827 35966859 -113550178 + AT_rich Low_complexity Low_complexity 1 32 0 6 859 7667 145 35 7 chr6 35966859 35968205 -113548832 - Lx4A LINE L1 0 7058 5675 6 859 221 328 0 0 chr6 35968513 35968571 -113548466 - L3 LINE CR1 -493 3996 3939 6 859 304 176 10 115 chr6 35968710 35968806 -113548231 - L1ME1 LINE L1 -197 5982 5897 6 859 347 314 56 28 chr6 35968870 35969050 -113547987 - L3 LINE CR1 -716 3773 3589 6 859 343 312 54 36 chr6 35969356 35969631 -113547406 - L1ME2 LINE L1 -281 6163 5877 6 859 363 23 0 0 chr6 35969633 35969677 -113547360 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 859 339 280 144 62 chr6 35969733 35969927 -113547110 - L1ME2 LINE L1 -269 5895 5686 6 859 1875 120 124 18 chr6 35970083 35970422 -113546615 - ORR1C1 LTR MaLR -3 375 1 6 859 999 265 68 30 chr6 35971246 35971867 -113545170 - L1MA4A LINE L1 -279 6021 5355 6 859 1381 52 36 5 chr6 35972526 35972720 -113544317 - L1Md_F3 LINE L1 -3 6581 6382 6 859 216 0 0 0 chr6 35974302 35974326 -113542711 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 859 646 304 13 0 chr6 35974329 35974487 -113542550 - B3A SINE B2 -38 160 1 6 859 252 306 51 29 chr6 35974501 35974639 -113542398 - Lx9 LINE L1 -1210 6434 6294 6 859 5050 249 115 51 chr6 35974827 35974995 -113542042 - Lx9 LINE L1 -1677 5967 5761 6 859 540 0 0 0 chr6 35974995 35975055 -113541982 + (TTTTA)n Simple_repeat Simple_repeat 2 61 0 6 859 5050 229 105 66 chr6 35975055 35975180 -113541857 - Lx9 LINE L1 -87 5760 5617 6 859 252 0 0 0 chr6 35975180 35975208 -113541829 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 6 859 5050 229 105 66 chr6 35975208 35976100 -113540937 - Lx9 LINE L1 -231 5616 4653 6 859 324 0 0 0 chr6 35976100 35976136 -113540901 + (TTA)n Simple_repeat Simple_repeat 1 36 0 6 859 5050 229 105 66 chr6 35976136 35976689 -113540348 - Lx9 LINE L1 -1195 4652 4073 6 859 1128 88 0 0 chr6 35976689 35976837 -113540200 + B1_Mus1 SINE Alu 1 148 0 6 859 5050 229 105 66 chr6 35976837 35977335 -113539702 - Lx9 LINE L1 -1775 4072 3612 6 859 204 40 0 0 chr6 35977344 35977369 -113539668 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 6 859 333 0 0 0 chr6 35977369 35977405 -113539632 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 859 3700 117 23 17 chr6 35977406 35977980 -113539057 - Lx2 LINE L1 -4 6993 6417 6 859 4920 239 82 38 chr6 35977985 35978989 -113538048 - Lx9 LINE L1 -2374 3473 2435 6 859 577 217 70 0 chr6 35978989 35979118 -113537919 - B1_Mur1 SINE Alu -7 142 5 6 859 4920 239 82 38 chr6 35979118 35980257 -113536780 - Lx9 LINE L1 -3413 2434 1231 6 859 4652 144 56 0 chr6 35980257 35981026 -113536011 - Lx2 LINE L1 -1 6996 6185 6 859 4920 182 39 21 chr6 35981026 35981329 -113535708 - Lx9 LINE L1 -6378 1230 918 6 859 660 188 17 0 chr6 35981405 35981522 -113535515 + ETnERV2-int LTR ERVK 7070 7188 -218 6 859 319 307 0 0 chr6 35981934 35982035 -113535002 - Lx9 LINE L1 -6760 848 748 6 859 243 250 120 0 chr6 35983376 35983484 -113533553 - L1MEd LINE L1 -4145 2004 1884 6 859 275 309 30 18 chr6 35984063 35984228 -113532809 - L1MEd LINE L1 -4896 1223 1057 6 859 481 275 7 7 chr6 35984260 35984399 -113532638 - L1M4 LINE L1 -2262 3884 3746 6 859 1711 63 9 0 chr6 35984404 35984627 -113532410 - L1_Mus1 LINE L1 0 6567 6343 6 859 6146 80 1 1 chr6 35984627 35985985 -113531052 + L1_Mus1 LINE L1 4977 6334 -233 6 859 2675 74 5 8 chr6 35986710 35987194 -113529843 - L1_Mus1 LINE L1 -621 5946 5459 6 859 4374 83 25 0 chr6 35987194 35987787 -113529250 + L1_Mus1 LINE L1 5959 6566 -1 6 859 22 56 0 0 chr6 35987829 35987865 -113529172 + AT_rich Low_complexity Low_complexity 1 36 0 6 859 270 0 0 0 chr6 35987881 35987911 -113529126 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 859 378 0 0 0 chr6 35987911 35987952 -113529085 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 859 474 304 15 53 chr6 35987980 35988071 -113528966 - RSINE1 SINE B4 -35 130 43 6 859 3143 48 5 10 chr6 35988071 35988469 -113528568 + MTA_Mm LTR MaLR 1 396 0 6 859 474 304 15 53 chr6 35988469 35988509 -113528528 - RSINE1 SINE B4 -123 42 4 6 859 710 226 164 0 chr6 35988568 35988745 -113528292 + B3 SINE B2 2 207 -9 6 859 300 315 68 76 chr6 35989352 35989371 -113527666 + L1MC5 LINE L1 7007 7025 -936 6 859 765 0 0 0 chr6 35989371 35989456 -113527581 + (GAA)n Simple_repeat Simple_repeat 2 86 0 6 859 300 315 68 76 chr6 35989456 35989831 -113527206 + L1MC5 LINE L1 7026 7397 -564 6 859 338 222 0 0 chr6 35989948 35990011 -113527026 + ID SINE ID 2 64 -160 6 859 274 278 41 10 chr6 35990011 35990046 -113526991 + BC1_Mm scRNA scRNA 2 102 -50 6 859 275 0 0 28 chr6 35990423 35990459 -113526578 + (TTA)n Simple_repeat Simple_repeat 2 36 0 6 859 707 273 104 10 chr6 35990513 35990923 -113526114 - L1MC2 LINE L1 -484 5860 5418 6 859 2880 109 0 20 chr6 35990939 35991390 -113525647 + Lx LINE L1 6164 6605 -49 6 859 8112 29 0 1 chr6 35991388 35992389 -113524648 + L1_Mm LINE L1 4884 5883 0 6 859 763 353 34 8 chr6 35992469 35992857 -113524180 - Lx8 LINE L1 -315 7158 6761 6 859 2223 135 55 21 chr6 35992899 35993376 -113523661 + L1_Mur3 LINE L1 1466 1958 -3922 6 859 326 188 141 28 chr6 35993372 35993514 -113523523 + L1_Mur3 LINE L1 3289 3446 -2434 6 859 30661 93 8 11 chr6 35993512 35998558 -113518479 + L1Md_F2 LINE L1 561 5585 -298 6 859 6992 78 35 4 chr6 35998559 35999518 -113517519 + L1Md_F2 LINE L1 5587 6575 -7 6 859 186 43 0 0 chr6 35999551 35999574 -113517463 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 6 859 1808 185 17 22 chr6 35999574 35999988 -113517049 + L1_Mur3 LINE L1 3509 3920 -1960 6 859 7867 163 31 13 chr6 36000001 36000054 -113516983 + Lx7 LINE L1 3928 3971 -1909 1 859 252 86 0 0 chr6 36000054 36000089 -113516948 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 859 7867 163 31 13 chr6 36000089 36001612 -113515425 + Lx7 LINE L1 3972 5533 -347 1 859 1819 182 39 18 chr6 36001613 36001949 -113515088 + MTC LTR MaLR 71 413 -8 3 859 5855 236 47 32 chr6 36001950 36002217 -113514820 + Lx7 LINE L1 5877 6168 -1528 1 859 306 0 0 0 chr6 36002217 36002251 -113514786 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 859 5855 236 47 32 chr6 36002251 36002878 -113514159 + Lx7 LINE L1 6169 6819 -877 1 859 1247 174 0 4 chr6 36002878 36003109 -113513928 - Lx2 LINE L1 0 6997 6768 5 859 5855 236 47 32 chr6 36003109 36003670 -113513367 + Lx7 LINE L1 6820 7362 -334 1 859 396 0 0 0 chr6 36003670 36003714 -113513323 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 6 859 5855 238 46 40 chr6 36003714 36003882 -113513155 + Lx7 LINE L1 7363 7505 -191 1 859 802 182 47 26 chr6 36004259 36004451 -113512586 + Lx7 LINE L1 7498 7693 -3 1 859 228 67 0 0 chr6 36004533 36004563 -113512474 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 859 387 0 0 0 chr6 36004563 36004606 -113512431 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 859 50 75 0 0 chr6 36006253 36006359 -113510678 + AT_rich Low_complexity Low_complexity 1 106 0 9 859 499 321 8 8 chr6 36006517 36006649 -113510388 + RSINE1 SINE B4 2 133 -32 1 859 504 0 0 0 chr6 36006654 36006710 -113510327 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 859 550 309 22 0 chr6 36007905 36008044 -113508993 + RSINE1 SINE B4 7 148 -17 1 859 989 302 39 24 chr6 36008274 36008606 -113508431 - MLT1E2 LTR MaLR -3 624 288 1 859 384 236 0 0 chr6 36009324 36009396 -113507641 - PB1D9 SINE Alu -48 72 1 1 859 686 118 17 0 chr6 36009664 36009783 -113507254 + (TAGA)n Simple_repeat Simple_repeat 1 121 0 1 859 1219 116 90 19 chr6 36010061 36010272 -113506765 - URR1A DNA MER1_type 0 226 1 1 859 697 311 67 87 chr6 36010357 36010758 -113506279 - MLT2C2 LTR ERVL -4 460 68 1 859 8434 11 2 0 chr6 36011207 36012413 -113504624 - L1Md_T LINE L1 -3 6579 5371 1 859 12800 20 0 1 chr6 36012411 36013984 -113503053 + L1Md_T LINE L1 3814 5384 -499 1 859 464 263 0 6 chr6 36015416 36015596 -113501441 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 859 680 365 47 29 chr6 36015965 36016309 -113500728 + MLT1A LTR MaLR 25 374 0 2 859 563 291 86 135 chr6 36017495 36017712 -113499325 - ORR1E LTR MaLR 0 370 169 2 859 396 104 0 0 chr6 36017712 36017779 -113499258 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 859 351 0 0 0 chr6 36017779 36017817 -113499220 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 859 594 267 54 6 chr6 36017817 36017983 -113499054 - ORR1E LTR MaLR -181 178 5 2 859 200 346 65 28 chr6 36019252 36019359 -113497678 - MER5A DNA MER1_type -75 114 4 2 859 294 29 0 0 chr6 36019631 36019666 -113497371 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 859 1081 199 13 22 chr6 36019895 36020121 -113496916 - URR1B DNA MER1_type 0 225 2 2 859 182 344 83 30 chr6 36020399 36020531 -113496506 + MIR SINE MIR 124 262 0 2 859 308 325 16 62 chr6 36021097 36021225 -113495812 - L1ME3A LINE L1 -34 6139 6018 2 859 374 332 96 46 chr6 36021400 36021676 -113495361 - MLT2B1 LTR ERVL -101 419 132 2 859 3121 190 25 8 chr6 36021966 36022565 -113494472 - Lx5 LINE L1 -215 6835 6227 3 859 4206 149 48 28 chr6 36022553 36022988 -113494049 - L1_Mur2 LINE L1 -3713 2164 1729 3 859 374 0 0 21 chr6 36022988 36023035 -113494002 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 3 859 4206 176 92 20 chr6 36023035 36023858 -113493179 - L1_Mur2 LINE L1 -4149 1728 816 3 859 262 234 39 0 chr6 36023886 36023999 -113493038 - L1_Mur2 LINE L1 -6529 557 480 3 859 2121 232 141 72 chr6 36024551 36025448 -113491589 - RMER17B LTR ERVK 0 958 1 3 859 219 69 0 0 chr6 36025455 36025484 -113491553 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 859 660 278 46 10 chr6 36025500 36025696 -113491341 - Lx8 LINE L1 -135 7338 7136 3 859 786 11 0 0 chr6 36025779 36025870 -113491167 + (CA)n Simple_repeat Simple_repeat 1 91 0 3 859 266 67 22 0 chr6 36025891 36025936 -113491101 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 3 859 1400 226 144 80 chr6 36025985 36026486 -113490551 + MT2A LTR ERVL 1 533 0 3 859 1259 103 16 5 chr6 36026517 36026702 -113490335 + B2_Mm2 SINE B2 2 188 -7 3 859 2787 122 7 19 chr6 36026985 36027620 -113489417 - Lx LINE L1 -616 6038 5410 4 859 3435 150 48 7 chr6 36027621 36028224 -113488813 + Lx LINE L1 6022 6649 -5 4 859 438 370 32 24 chr6 36028489 36028738 -113488299 - MLT1F2 LTR MaLR -4 556 306 4 859 354 45 0 0 chr6 36028815 36028859 -113488178 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 859 1083 38 0 0 chr6 36028860 36028992 -113488045 + (GA)n Simple_repeat Simple_repeat 1 132 0 4 859 265 47 47 0 chr6 36029381 36029424 -113487613 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 859 268 270 111 11 chr6 36030063 36030153 -113486884 - Charlie4z DNA MER1_type -31 136 38 4 859 338 281 107 24 chr6 36030317 36030485 -113486552 - MER5A DNA MER1_type 0 189 8 4 859 492 314 52 108 chr6 36031340 36031665 -113485372 + ORR1E LTR MaLR 2 308 -51 4 859 310 337 57 67 chr6 36032066 36032276 -113484761 - ORR1E LTR MaLR -146 213 6 4 859 225 149 85 0 chr6 36032328 36032375 -113484662 - MT2_Mm LTR ERVL 0 493 443 4 859 387 0 0 0 chr6 36032384 36032427 -113484610 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 859 36202 30 0 1 chr6 36032762 36039169 -113477868 - L1Md_T LINE L1 0 6585 86 5 859 360 0 0 0 chr6 36039364 36039404 -113477633 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 859 573 76 0 0 chr6 36039526 36039605 -113477432 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 5 859 735 285 10 25 chr6 36041006 36041027 -113476010 - B3A SINE B2 -1 197 179 5 859 279 79 0 0 chr6 36041027 36041065 -113475972 + (TATG)n Simple_repeat Simple_repeat 4 41 0 5 859 735 285 10 25 chr6 36041065 36041241 -113475796 - B3A SINE B2 -20 178 3 5 859 23 33 0 0 chr6 36041877 36041907 -113475130 + AT_rich Low_complexity Low_complexity 1 30 0 5 859 3441 106 2 4 chr6 36041909 36042074 -113474963 - Lx2A LINE L1 -178 6830 6665 5 859 216 0 0 0 chr6 36042074 36042098 -113474939 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 859 3441 106 2 4 chr6 36042098 36042446 -113474591 - Lx2A LINE L1 -344 6664 6318 5 859 532 296 81 38 chr6 36042513 36042699 -113474338 + ID_B1 SINE B4 9 202 -22 5 859 360 77 0 0 chr6 36042710 36042762 -113474275 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 6 859 2792 258 87 37 chr6 36044537 36044686 -113472351 - RCHARR1 DNA MER1_type 0 974 825 6 859 416 67 17 0 chr6 36044686 36044746 -113472291 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 859 2792 258 87 37 chr6 36044746 36044759 -113472278 - RCHARR1 DNA MER1_type -150 824 803 6 107 5670 50 1 3 chr6 36044759 36045464 -113471573 - L1_Mus1 LINE L1 0 6567 5864 6 860 2792 258 87 37 chr6 36045464 36046227 -113470810 - RCHARR1 DNA MER1_type -172 802 1 6 860 207 0 0 0 chr6 36046468 36046491 -113470546 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 860 189 196 0 0 chr6 36047141 36047187 -113469850 + (TATG)n Simple_repeat Simple_repeat 2 47 0 6 860 811 292 11 0 chr6 36047736 36047921 -113469116 + B3 SINE B2 18 204 -12 6 860 279 0 0 0 chr6 36047921 36047952 -113469085 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 860 566 322 54 37 chr6 36049289 36049663 -113467374 - L1MB2 LINE L1 -10 6161 5778 6 860 1872 179 38 11 chr6 36049663 36050035 -113467002 - ORR1C2 LTR MaLR 0 384 3 6 860 566 322 54 37 chr6 36050035 36050144 -113466893 - L1MB2 LINE L1 -394 5777 5670 6 860 512 292 118 0 chr6 36050153 36050297 -113466740 + RSINE1 SINE B4 3 163 -2 7 860 218 246 0 0 chr6 36050306 36050363 -113466674 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 860 620 278 65 18 chr6 36050409 36050794 -113466243 - L1MB2 LINE L1 -516 5667 5265 6 860 348 305 50 10 chr6 36050879 36051177 -113465860 - L1MB2 LINE L1 -1157 4983 4674 6 860 333 0 0 0 chr6 36051315 36051352 -113465685 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 860 444 62 0 0 chr6 36052598 36052662 -113464375 + (CAGAGA)n Simple_repeat Simple_repeat 1 64 0 7 860 28 0 0 0 chr6 36052753 36052781 -113464256 + AT_rich Low_complexity Low_complexity 1 28 0 7 860 186 43 0 0 chr6 36054413 36054436 -113462601 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 7 860 1378 45 45 0 chr6 36055687 36055864 -113461173 + L1_Mus1 LINE L1 6378 6562 -5 7 860 338 0 0 23 chr6 36056393 36056436 -113460601 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 7 860 275 330 77 0 chr6 36056862 36056953 -113460084 - B3A SINE B2 -100 98 1 7 860 401 272 29 0 chr6 36057062 36057165 -113459872 + B1F1 SINE Alu 43 148 -1 7 860 305 279 70 35 chr6 36057479 36057594 -113459443 + MTEb LTR MaLR 250 368 -11 8 860 452 250 130 24 chr6 36057893 36058016 -113459021 - B3 SINE B2 0 216 81 8 860 238 192 19 0 chr6 36058530 36058582 -113458455 + GA-rich Low_complexity Low_complexity 2 54 0 8 860 279 79 0 0 chr6 36058633 36058671 -113458366 + (CCA)n Simple_repeat Simple_repeat 1 38 0 8 860 395 241 31 42 chr6 36058689 36058850 -113458187 - L1MA4 LINE L1 -419 5881 5694 8 860 318 381 43 6 chr6 36058851 36059012 -113458025 - HAL1 LINE L1 -817 1690 1524 8 860 230 313 83 12 chr6 36060084 36060168 -113456869 - Charlie1b DNA MER1_type -433 90 1 8 860 623 233 198 6 chr6 36060297 36060474 -113456563 - B3 SINE B2 -4 212 2 8 860 966 128 0 0 chr6 36060952 36061093 -113455944 + B1_Mus1 SINE Alu 8 148 0 8 860 214 387 32 21 chr6 36061274 36061369 -113455668 - MER5B DNA MER1_type -50 128 33 8 860 303 141 0 0 chr6 36061604 36061668 -113455369 + (TA)n Simple_repeat Simple_repeat 1 64 0 9 860 24 53 0 0 chr6 36061917 36061955 -113455082 + AT_rich Low_complexity Low_complexity 1 38 0 9 860 7167 85 29 28 chr6 36062186 36063208 -113453829 - RLTR13D5 LTR ERVK 0 1023 1 9 860 420 149 58 18 chr6 36063302 36063473 -113453564 + (TA)n Simple_repeat Simple_repeat 2 179 0 9 860 207 0 0 0 chr6 36064691 36064714 -113452323 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 860 198 385 67 30 chr6 36065619 36065753 -113451284 - MIRb SINE MIR -108 160 22 9 860 423 310 113 38 chr6 36066414 36066679 -113450358 - L1MB7 LINE L1 -53 6131 5847 9 860 1061 310 83 48 chr6 36067883 36068536 -113448501 - Lx9 LINE L1 -40 7604 6929 9 860 1236 304 41 16 chr6 36068543 36068931 -113448106 - Lx9 LINE L1 -835 6809 6412 9 860 769 262 36 16 chr6 36069827 36070021 -113447016 - B3A SINE B2 0 198 1 9 860 887 277 10 14 chr6 36070027 36070236 -113446801 + MTEa LTR MaLR 8 215 -164 9 860 731 216 39 15 chr6 36070248 36070453 -113446584 - Lx4B LINE L1 -17 7041 6753 1 860 539 324 11 23 chr6 36070454 36070631 -113446406 + MTEa LTR MaLR 205 379 0 9 860 281 283 62 8 chr6 36070842 36070970 -113446067 - L1M2 LINE L1 -690 5610 5476 1 860 270 0 0 0 chr6 36070970 36071000 -113446037 + (T)n Simple_repeat Simple_repeat 1 30 0 1 860 192 125 0 0 chr6 36071057 36071089 -113445948 + (T)n Simple_repeat Simple_repeat 1 32 0 1 860 1062 79 0 0 chr6 36071161 36071300 -113445737 - B1_Mus2 SINE Alu -8 139 1 1 860 23 33 0 0 chr6 36071336 36071366 -113445671 + AT_rich Low_complexity Low_complexity 1 30 0 1 860 411 237 34 23 chr6 36071447 36071624 -113445413 - L1M2 LINE L1 -841 5302 5124 1 860 237 268 0 27 chr6 36071739 36071812 -113445225 + CT-rich Low_complexity Low_complexity 4 74 0 1 860 411 268 55 12 chr6 36071897 36072116 -113444921 - L1M2 LINE L1 -3112 3031 2785 1 860 498 118 0 0 chr6 36072172 36072248 -113444789 - Lx3C LINE L1 -120 6856 6781 1 860 567 0 0 0 chr6 36072296 36072359 -113444678 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 1 860 663 303 32 87 chr6 36074106 36074544 -113442493 - Lx9 LINE L1 -27 7617 7204 1 860 397 231 157 0 chr6 36074836 36074944 -113442093 + ID_B1 SINE B4 87 211 -13 1 860 233 120 40 0 chr6 36075764 36075814 -113441223 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1 860 1475 42 0 5 chr6 36075816 36076007 -113441030 - L1Md_F3 LINE L1 -14 6570 6381 1 860 6118 70 13 6 chr6 36076515 36077347 -113439690 - Lx3_Mus LINE L1 -3 7006 6169 1 860 1152 113 138 0 chr6 36077347 36077446 -113439591 + Lx3_Mus LINE L1 5935 6049 -960 1 860 627 14 0 0 chr6 36077446 36077518 -113439519 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 1 860 1152 113 138 0 chr6 36077518 36077621 -113439416 + Lx3_Mus LINE L1 6050 6164 -845 1 860 441 192 0 56 chr6 36077717 36077842 -113439195 - Lx3C LINE L1 -2 6971 6853 1 860 584 112 11 0 chr6 36077843 36077932 -113439105 - Lx3C LINE L1 -227 6749 6660 1 860 217 397 0 14 chr6 36079800 36079874 -113437163 + ID4_ SINE ID 3 75 -8 1 860 4588 127 35 18 chr6 36080324 36081092 -113435945 - Lx3B LINE L1 -4 6969 6189 1 860 2525 113 22 22 chr6 36081092 36081509 -113435528 + L1_Mur1 LINE L1 4984 5400 -486 1 860 301 309 68 11 chr6 36081542 36081732 -113435305 - L1M4 LINE L1 -366 5818 5618 1 860 207 0 0 0 chr6 36082055 36082078 -113434959 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 860 333 0 0 0 chr6 36082078 36082114 -113434923 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 860 810 311 14 19 chr6 36082313 36082529 -113434508 - B3 SINE B2 0 216 2 1 860 706 250 66 11 chr6 36082899 36083139 -113433898 - Lx3C LINE L1 -2 6998 6729 1 860 234 0 0 0 chr6 36084653 36084679 -113432358 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 860 184 149 21 21 chr6 36084799 36084847 -113432190 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 860 218 315 0 0 chr6 36085348 36085402 -113431635 + polypyrimidine Low_complexity Low_complexity 5 58 0 1 860 2808 124 2 7 chr6 36086818 36087248 -113429789 + Lx LINE L1 6220 6647 -7 1 860 241 331 33 40 chr6 36088220 36088371 -113428666 + Lx8 LINE L1 6968 7117 -356 1 860 258 370 79 20 chr6 36088375 36088629 -113428408 - RMER12 LTR ERVK -328 994 726 1 860 929 340 101 63 chr6 36089392 36090285 -113426752 + MTE-int LTR MaLR 70 996 -584 1 860 532 319 138 4 chr6 36090324 36090585 -113426452 - FordPrefect DNA Tip100 -384 1299 1004 1 860 663 13 0 0 chr6 36090586 36090662 -113426375 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 860 369 0 0 0 chr6 36090662 36090702 -113426335 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 860 311 343 49 49 chr6 36090774 36090918 -113426119 - FordPrefect DNA Tip100 -653 1030 887 1 860 186 319 169 19 chr6 36091220 36091380 -113425657 + L3 LINE CR1 3555 3738 -751 1 860 604 220 187 58 chr6 36091628 36091869 -113425168 - RLTR10A LTR ERVK 0 411 140 1 860 1901 205 13 27 chr6 36091910 36092399 -113424638 - IAP-d-int LTR ERVK -202 7042 6530 1 860 1910 330 50 42 chr6 36092504 36094397 -113422640 - IAP-d-int LTR ERVK -1462 5080 3208 1 860 686 246 111 68 chr6 36094398 36094812 -113422225 - IAP-d-int LTR ERVK -3870 2672 2241 1 860 323 183 59 119 chr6 36095008 36095074 -113421963 - RLTR10-int LTR ERVK -1559 428 365 1 860 5477 82 66 17 chr6 36095074 36095889 -113421148 + RLTR13A LTR ERVK 1 855 0 1 860 323 183 59 119 chr6 36095889 36095940 -113421097 - RLTR10-int LTR ERVK -1623 364 318 1 860 626 232 183 50 chr6 36095956 36096196 -113420841 - RLTR10A LTR ERVK 0 411 140 1 860 547 248 22 76 chr6 36097228 36097451 -113419586 - Lx6 LINE L1 -21 7439 7229 1 860 8495 196 51 30 chr6 36097454 36099793 -113417244 - Lx5 LINE L1 -611 6439 4003 1 860 33894 88 10 4 chr6 36099762 36105915 -113411122 - L1Md_F2 LINE L1 -10 6572 380 1 860 795 197 0 0 chr6 36105928 36106080 -113410957 - Lx5 LINE L1 -1834 4046 3895 1 860 7717 91 7 1 chr6 36106075 36107623 -113409414 + L1_Mus3 LINE L1 5080 6638 0 1 860 9893 188 26 36 chr6 36107624 36109891 -113407146 - Lx5 LINE L1 -1970 3910 1666 1 860 204 97 0 0 chr6 36109953 36109984 -113407053 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1 860 269 292 0 130 chr6 36110328 36110505 -113406532 - RLTR21 LTR ERVK -329 1243 1090 1 860 207 325 0 25 chr6 36110513 36110592 -113406445 + (CATATA)n Simple_repeat Simple_repeat 6 82 0 1 860 333 0 0 0 chr6 36110593 36110630 -113406407 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 860 695 191 6 0 chr6 36111552 36111714 -113405323 + CT-rich Low_complexity Low_complexity 2 164 0 1 860 223 287 0 121 chr6 36111724 36111823 -113405214 - BC1_Mm scRNA scRNA -51 101 15 1 860 237 363 20 0 chr6 36112996 36113098 -113403939 + LTR33 LTR ERVL 18 121 -394 1 860 257 337 91 17 chr6 36113373 36113548 -113403489 - L2 LINE L2 -1838 1581 1394 1 860 3467 174 62 4 chr6 36113618 36114299 -113402738 - RMER6D LTR ERVK 0 720 1 1 860 232 287 91 46 chr6 36115034 36115209 -113401828 - L1M2 LINE L1 -720 5580 5398 1 860 2196 255 37 8 chr6 36115334 36115816 -113401221 - Lx5 LINE L1 -10 7040 6545 1 860 651 294 34 6 chr6 36115817 36115995 -113401042 - B3 SINE B2 -33 183 1 1 860 986 304 61 16 chr6 36116007 36116501 -113400536 - L1M2 LINE L1 -849 5294 4779 1 860 1951 94 3 21 chr6 36116517 36116827 -113400210 - Lx LINE L1 -5 6633 6262 1 860 1446 141 31 4 chr6 36116822 36117079 -113399958 - Lx2A1 LINE L1 -20 6988 6725 1 860 238 130 245 61 chr6 36117051 36117149 -113399888 - L1_Rod LINE L1 -1171 4676 4561 1 860 24 32 0 0 chr6 36117583 36117614 -113399423 + AT_rich Low_complexity Low_complexity 1 31 0 1 860 340 381 31 84 chr6 36118558 36118879 -113398158 - L2 LINE L2 -564 2855 2552 1 860 551 296 283 36 chr6 36119046 36119350 -113397687 - MTEa LTR MaLR 0 379 1 1 860 228 262 23 45 chr6 36119916 36120004 -113397033 + MLT1A1 LTR MaLR 318 403 -5 1 860 225 261 0 0 chr6 36120943 36120989 -113396048 + (TTG)n Simple_repeat Simple_repeat 2 47 0 1 860 634 352 35 43 chr6 36121050 36121279 -113395758 + B4A SINE B4 7 235 -57 1 860 3103 79 9 18 chr6 36121279 36121718 -113395319 + L1Md_F2 LINE L1 6148 6582 0 1 860 634 352 35 43 chr6 36121718 36121770 -113395267 + B4A SINE B4 236 286 -6 1 860 674 326 6 139 chr6 36121901 36122029 -113395008 + B4A SINE B4 2 88 -204 1 860 447 73 0 0 chr6 36122029 36122097 -113394940 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 1 860 674 326 6 139 chr6 36122097 36122299 -113394738 + B4A SINE B4 89 288 -4 1 860 393 22 0 0 chr6 36122322 36122368 -113394669 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 860 8968 9 0 0 chr6 36122429 36123641 -113393396 - L1Md_T LINE L1 0 6582 5371 1 860 7201 23 0 0 chr6 36123639 36124497 -113392540 + L1_Mm LINE L1 3814 4671 -1212 1 860 26 64 0 0 chr6 36124843 36124890 -113392147 + AT_rich Low_complexity Low_complexity 1 47 0 1 860 1931 202 40 11 chr6 36127201 36127576 -113389461 - MTD LTR MaLR -33 386 1 1 860 195 42 0 0 chr6 36128221 36128245 -113388792 + (T)n Simple_repeat Simple_repeat 1 24 0 1 860 3659 47 7 0 chr6 36128248 36128696 -113388341 - L1_Mus1 LINE L1 0 6567 6117 1 860 1920 59 0 0 chr6 36128696 36128935 -113388102 + L1_Mus1 LINE L1 5867 6105 -462 1 860 768 319 45 47 chr6 36129099 36129458 -113387579 - ORR1E LTR MaLR 0 359 2 1 860 231 200 0 0 chr6 36130057 36130097 -113386940 - AmnSINE1 SINE SINE -8 567 528 1 860 22 35 0 0 chr6 36130614 36130643 -113386394 + AT_rich Low_complexity Low_complexity 1 29 0 1 860 387 237 31 10 chr6 36130980 36131078 -113385959 + MTEb LTR MaLR 279 378 -1 1 860 27 49 0 0 chr6 36131181 36131222 -113385815 + AT_rich Low_complexity Low_complexity 1 41 0 1 860 3312 114 6 2 chr6 36131517 36132018 -113385019 - Lx3A LINE L1 -3 6978 6476 1 860 21 0 0 0 chr6 36133246 36133267 -113383770 + AT_rich Low_complexity Low_complexity 1 21 0 1 860 32 26 0 0 chr6 36133280 36133319 -113383718 + AT_rich Low_complexity Low_complexity 1 39 0 1 860 582 54 0 0 chr6 36134189 36134263 -113382774 + (TCC)n Simple_repeat Simple_repeat 2 75 0 1 860 465 90 0 0 chr6 36135016 36135083 -113381954 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 860 312 83 0 0 chr6 36135084 36135132 -113381905 + (CAGAGA)n Simple_repeat Simple_repeat 2 49 0 1 860 25 51 0 0 chr6 36135155 36135194 -113381843 + AT_rich Low_complexity Low_complexity 1 39 0 1 860 270 386 42 24 chr6 36135483 36135650 -113381387 - LTR33 LTR ERVL -66 449 280 1 860 979 207 45 0 chr6 36135791 36135989 -113381048 - Lx9 LINE L1 -732 6912 6706 1 860 1601 186 115 0 chr6 36135983 36136349 -113380688 + Lx9 LINE L1 7236 7643 -1 1 860 346 325 96 69 chr6 36137684 36137902 -113379135 + ID_B1 SINE B4 1 224 0 1 860 353 305 126 5 chr6 36140122 36140320 -113376717 + L1M5 LINE L1 5013 5234 -912 1 860 446 328 90 66 chr6 36140371 36140737 -113376300 + Tigger6b DNA MER2_type 1069 1443 -154 1 860 516 184 0 0 chr6 36140868 36140971 -113376066 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 860 212 320 37 83 chr6 36141171 36141280 -113375757 - RSINE1 SINE B4 -61 104 1 1 860 279 316 0 0 chr6 36141941 36142020 -113375017 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 860 436 329 130 67 chr6 36142029 36142277 -113374760 - B4A SINE B4 -4 288 22 1 860 1149 58 0 0 chr6 36142277 36142416 -113374621 - B1_Mm SINE Alu -8 139 1 1 860 436 329 130 67 chr6 36142416 36142437 -113374600 - B4A SINE B4 -271 21 2 1 860 319 249 29 35 chr6 36142469 36142624 -113374413 - L1MB7 LINE L1 -22 6156 6002 1 860 315 359 90 53 chr6 36142679 36142923 -113374114 - L1M4b LINE L1 -6528 806 554 1 860 606 374 42 0 chr6 36142942 36143180 -113373857 + Tigger7 DNA MER2_type 91 338 -2153 1 860 255 341 11 32 chr6 36143192 36143286 -113373751 + Tigger7 DNA MER2_type 970 1061 -1430 1 860 4343 164 13 6 chr6 36143449 36144341 -113372696 - Lx5 LINE L1 -674 6376 5473 1 860 2122 202 7 26 chr6 36144352 36144768 -113372269 + Lx5 LINE L1 6375 6782 -268 1 860 213 65 0 0 chr6 36145365 36145396 -113371641 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 860 213 65 0 0 chr6 36145806 36145837 -113371200 + (CAT)n Simple_repeat Simple_repeat 1 31 0 2 860 903 63 0 0 chr6 36145839 36145966 -113371071 + (TG)n Simple_repeat Simple_repeat 2 128 0 2 860 482 284 27 7 chr6 36145972 36146121 -113370916 - RSINE1 SINE B4 -9 156 5 2 860 351 65 0 0 chr6 36146124 36146170 -113370867 + (ACTG)n Simple_repeat Simple_repeat 4 49 0 2 860 207 69 0 0 chr6 36146170 36146198 -113370839 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 2 860 2314 100 3 6 chr6 36146264 36146596 -113370441 + Lx LINE L1 6291 6621 -33 2 860 331 0 19 58 chr6 36146596 36146648 -113370389 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 2 860 236 268 18 0 chr6 36148414 36148470 -113368567 - MIRb SINE MIR -54 214 158 2 860 261 0 0 0 chr6 36148745 36148774 -113368263 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 860 379 300 6 96 chr6 36149039 36149216 -113367821 - MIR SINE MIR -76 186 26 2 860 627 51 0 0 chr6 36149232 36149311 -113367726 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 2 860 251 325 17 26 chr6 36151406 36151523 -113365514 - MIR SINE MIR -132 130 15 2 860 352 274 173 19 chr6 36153380 36153588 -113363449 + L1MD3 LINE L1 7482 7721 -274 2 860 1610 216 44 183 chr6 36153738 36154447 -113362590 + RMER19C LTR ERVK 2 611 0 2 860 332 357 47 43 chr6 36155710 36155944 -113361093 - MLT1A LTR MaLR -124 250 16 2 860 337 296 22 22 chr6 36156024 36156159 -113360878 - L1MDb LINE L1 -6238 171 37 2 860 186 103 0 0 chr6 36160195 36160224 -113356813 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 860 21 0 0 0 chr6 36160239 36160260 -113356777 + AT_rich Low_complexity Low_complexity 1 21 0 2 860 618 306 32 47 chr6 36160427 36160705 -113356332 - B4 SINE B4 -18 274 1 2 860 540 200 21 0 chr6 36160900 36161045 -113355992 + GA-rich Low_complexity Low_complexity 2 149 0 2 860 21 36 0 0 chr6 36161455 36161483 -113355554 + AT_rich Low_complexity Low_complexity 1 28 0 2 860 235 355 61 56 chr6 36161561 36161839 -113355198 + Kanga1a DNA Tc2 159 438 -316 2 860 286 248 136 26 chr6 36163001 36163177 -113353860 + L1MEg LINE L1 1245 1470 -4730 2 860 490 116 0 0 chr6 36163214 36163300 -113353737 + Lx2 LINE L1 6911 6996 -1 2 860 519 95 0 0 chr6 36163302 36163376 -113353661 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 2 860 1143 89 0 0 chr6 36163961 36164118 -113352919 - L1_Mus1 LINE L1 -1 6566 6410 2 860 405 293 61 0 chr6 36164163 36164262 -113352775 - ID_B1 SINE B4 -15 209 105 2 860 3761 154 36 26 chr6 36164268 36164963 -113352074 + RMER6A LTR ERVK 1 702 -54 2 860 634 296 0 0 chr6 36165685 36165827 -113351210 - ID_B1 SINE B4 -1 223 82 2 860 282 55 71 18 chr6 36166516 36166572 -113350465 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 2 860 1374 273 16 41 chr6 36166608 36167043 -113349994 - Lx9 LINE L1 -349 7295 6872 2 860 359 154 12 49 chr6 36167217 36167299 -113349738 - Lx5 LINE L1 -8 7042 6964 2 860 558 0 0 0 chr6 36168590 36168652 -113348385 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 860 712 284 27 47 chr6 36169134 36169430 -113347607 + B4A SINE B4 1 290 -2 2 860 225 0 0 0 chr6 36169645 36169670 -113347367 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 860 988 286 51 79 chr6 36172501 36172854 -113344183 - ORR1E LTR MaLR -11 348 6 2 860 717 286 5 0 chr6 36174084 36174280 -113342757 - Lx6 LINE L1 -6 7454 7258 2 107 36337 15 3 7 chr6 36174284 36179688 -113337349 + L1Md_A LINE L1 208 5586 -297 2 861 8725 17 1 0 chr6 36179688 36180683 -113336354 + L1Md_A LINE L1 5587 6582 0 2 861 661 264 20 30 chr6 36180683 36180882 -113336155 - Lx6 LINE L1 -193 7267 7071 2 861 273 135 0 0 chr6 36181733 36181785 -113335252 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 2 861 207 75 75 0 chr6 36181889 36181929 -113335108 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 861 352 250 168 34 chr6 36182141 36182290 -113334747 - MER2 DNA MER2_type -47 298 130 2 861 657 289 47 94 chr6 36182758 36182932 -113334105 + MTEa LTR MaLR 1 171 -208 2 861 396 0 0 0 chr6 36182932 36182976 -113334061 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 861 657 289 47 94 chr6 36182976 36183057 -113333980 + MTEa LTR MaLR 172 244 -135 2 861 297 264 97 35 chr6 36183283 36183397 -113333640 + MTEa LTR MaLR 224 344 -35 2 861 279 0 0 0 chr6 36184475 36184506 -113332531 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 861 309 301 37 55 chr6 36185590 36185699 -113331338 - PB1D10 SINE Alu 0 117 11 2 861 564 342 43 41 chr6 36186666 36186761 -113330276 - L1ME1 LINE L1 -17 6162 6072 2 861 1132 263 100 5 chr6 36186761 36187140 -113329897 + MTD LTR MaLR 5 419 0 2 861 564 342 43 41 chr6 36187140 36187459 -113329578 - L1ME1 LINE L1 -108 6071 5747 2 861 331 351 26 22 chr6 36188245 36188475 -113328562 - L1MEf LINE L1 -4542 1658 1428 2 861 183 80 0 0 chr6 36188716 36188741 -113328296 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 2 861 540 256 0 0 chr6 36188830 36188959 -113328078 + RMER1B Other Other 28 156 -910 2 861 903 296 53 28 chr6 36188948 36189268 -113327769 - RMER1A Other Other -575 455 128 2 861 1069 255 109 16 chr6 36189267 36189683 -113327354 + RMER1A Other Other 147 531 -499 2 861 991 178 169 0 chr6 36189684 36189795 -113327242 + RMER1A Other Other 766 911 -119 2 861 450 0 0 0 chr6 36189795 36189845 -113327192 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 861 991 178 169 0 chr6 36189845 36189958 -113327079 + RMER1A Other Other 912 1027 -3 2 861 246 350 25 25 chr6 36190161 36190281 -113326756 - RMER15 LTR ERVL -156 419 300 2 861 21 0 0 0 chr6 36190670 36190691 -113326346 + AT_rich Low_complexity Low_complexity 1 21 0 2 861 1488 154 197 3 chr6 36190800 36191174 -113325863 + RMER4A LTR ERVK 18 464 -2 2 861 232 295 28 14 chr6 36193049 36193190 -113323847 - L1MCc LINE L1 -1567 5374 5232 2 861 395 316 53 11 chr6 36193254 36193539 -113323498 - L1MC4a LINE L1 -16 7866 7570 2 861 537 128 0 0 chr6 36193700 36193778 -113323259 - B1_Mus1 SINE Alu -70 78 1 2 861 355 197 0 40 chr6 36193713 36193787 -113323250 - B4 SINE B4 -143 149 79 2 861 464 281 68 24 chr6 36193890 36194138 -113322899 - L1MC4a LINE L1 -606 7276 7018 2 861 227 304 68 147 chr6 36194350 36194601 -113322436 - ORR1E LTR MaLR -52 307 77 2 861 227 275 32 24 chr6 36195316 36195439 -113321598 - L1MCc LINE L1 -5183 1240 1117 2 861 408 283 93 12 chr6 36195667 36195828 -113321209 - Lx8 LINE L1 -1125 6348 6175 2 861 188 293 17 17 chr6 36196530 36196589 -113320448 - MIR3 SINE MIR -17 191 133 2 861 249 405 63 11 chr6 36197301 36197476 -113319561 + MIR3 SINE MIR 16 199 -9 2 861 213 65 0 0 chr6 36197813 36197844 -113319193 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 861 180 0 0 0 chr6 36198271 36198291 -113318746 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2 861 875 294 40 16 chr6 36198335 36198584 -113318453 - B4A SINE B4 -14 278 24 2 861 529 299 16 0 chr6 36199663 36199790 -113317247 + B3 SINE B2 4 132 -84 2 861 1122 207 45 21 chr6 36200613 36200855 -113316182 + ORR1B1 LTR MaLR 41 288 -106 2 861 864 138 7 0 chr6 36200855 36200993 -113316044 - BGLII LTR ERVK 0 421 283 2 861 306 0 0 0 chr6 36201236 36201270 -113315767 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 861 537 16 0 0 chr6 36201270 36201331 -113315706 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 861 497 271 25 0 chr6 36201342 36201460 -113315577 + ID_B1 SINE B4 99 219 -5 2 861 444 322 128 4 chr6 36201566 36201800 -113315237 - Charlie7 DNA MER1_type -674 1938 1676 2 861 301 297 84 56 chr6 36201804 36202018 -113315019 - Charlie7 DNA MER1_type -2077 535 316 2 861 247 338 93 34 chr6 36203215 36203420 -113313617 + MIRb SINE MIR 43 259 -9 2 861 1929 252 16 9 chr6 36204411 36204863 -113312174 + Lx6 LINE L1 6912 7366 -94 2 861 348 24 0 0 chr6 36204864 36204905 -113312132 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 861 377 20 20 0 chr6 36204905 36204954 -113312083 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 861 195 42 0 0 chr6 36204954 36204978 -113312059 + (TGGA)n Simple_repeat Simple_repeat 1 24 0 2 861 671 302 85 53 chr6 36205736 36206450 -113310587 + L1M2 LINE L1 2251 2987 -3153 2 861 6997 71 23 1 chr6 36206444 36207810 -113309227 + L1_Mus2 LINE L1 5170 6565 -1 2 861 464 295 150 3 chr6 36208027 36208353 -113308684 + L1M2 LINE L1 3388 3761 -2379 2 861 1487 300 98 25 chr6 36208411 36208566 -113308471 + L1M2 LINE L1 3857 4051 -2092 2 861 477 0 0 0 chr6 36208566 36208619 -113308418 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 861 1487 300 98 25 chr6 36208619 36209649 -113307388 + L1M2 LINE L1 4052 5127 -1016 2 861 23 0 0 0 chr6 36210318 36210341 -113306696 + AT_rich Low_complexity Low_complexity 1 23 0 2 861 897 37 0 0 chr6 36210577 36210686 -113306351 + (TTTTC)n Simple_repeat Simple_repeat 5 113 0 2 861 962 58 0 0 chr6 36210686 36210807 -113306230 - B1_Mm SINE Alu -26 121 1 2 861 541 242 55 0 chr6 36210694 36210822 -113306215 - B4 SINE B4 -88 204 70 2 861 5761 31 18 0 chr6 36211162 36211842 -113305195 - L1Md_F2 LINE L1 -15 6567 5876 2 861 7067 105 6 6 chr6 36211850 36213403 -113303634 - L1_Mus4 LINE L1 -7 6629 5076 2 861 352 281 47 50 chr6 36213406 36213541 -113303496 - B1F SINE Alu -2 147 13 2 861 249 242 42 70 chr6 36213670 36213812 -113303225 + L1M2 LINE L1 5149 5286 -857 2 861 333 315 83 14 chr6 36213963 36214237 -113302800 + L1M2 LINE L1 5317 5604 -699 2 861 861 76 0 0 chr6 36214549 36214667 -113302370 + (GGAA)n Simple_repeat Simple_repeat 2 119 0 2 861 29 60 0 0 chr6 36214806 36214856 -113302181 + AT_rich Low_complexity Low_complexity 1 50 0 2 861 1106 300 97 19 chr6 36215038 36216033 -113301004 - Lx8 LINE L1 -1559 5914 4883 2 861 1709 32 0 14 chr6 36216042 36216300 -113300737 - L1Md_F3 LINE L1 0 6584 6348 2 861 180 0 0 0 chr6 36216303 36216323 -113300714 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 861 492 32 0 0 chr6 36217986 36218048 -113298989 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 861 261 217 53 21 chr6 36218977 36219020 -113298017 + Lx8 LINE L1 5711 5758 -1715 2 861 369 0 0 0 chr6 36219020 36219061 -113297976 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 861 261 217 53 21 chr6 36219061 36219111 -113297926 + Lx8 LINE L1 5759 5807 -1666 2 861 823 218 67 34 chr6 36219432 36219641 -113297396 + B3 SINE B2 1 216 0 2 861 1898 179 16 62 chr6 36220668 36221055 -113295982 - ORR1C1 LTR MaLR -4 374 6 2 861 248 175 50 0 chr6 36221374 36221454 -113295583 + (TTATA)n Simple_repeat Simple_repeat 1 84 0 2 861 272 264 29 58 chr6 36223283 36223420 -113293617 + Lx6 LINE L1 7320 7452 -8 2 861 243 284 50 163 chr6 36223445 36223647 -113293390 - MTEb LTR MaLR 0 379 201 3 861 1550 305 82 76 chr6 36223847 36224239 -113292798 - Lx9 LINE L1 -5 7639 7234 3 861 227 100 0 0 chr6 36224239 36224269 -113292768 - U2 snRNA snRNA -158 30 1 3 861 1550 305 82 76 chr6 36224269 36224763 -113292274 - Lx9 LINE L1 -5 7233 6719 3 861 337 250 0 0 chr6 36224763 36224823 -113292214 - MTE-int LTR MaLR -56 1524 1465 3 861 2716 55 0 11 chr6 36224824 36225209 -113291828 - L1_Mus1 LINE L1 0 6567 6219 3 861 3669 43 0 2 chr6 36225209 36225665 -113291372 - L1_Mus1 LINE L1 -463 6104 5666 3 861 622 349 63 69 chr6 36225931 36226309 -113290728 - MTE-int LTR MaLR -212 1368 993 3 861 288 70 0 0 chr6 36226531 36226574 -113290463 + (T)n Simple_repeat Simple_repeat 1 43 0 3 861 320 312 40 34 chr6 36227329 36227478 -113289559 + L1ME1 LINE L1 5536 5685 -494 3 861 423 56 0 0 chr6 36227651 36227705 -113289332 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 861 978 264 61 20 chr6 36227751 36228047 -113288990 + MTD LTR MaLR 114 405 -14 3 861 239 271 79 61 chr6 36228078 36228192 -113288845 + L1ME1 LINE L1 5991 6106 -73 3 861 29 0 0 0 chr6 36228240 36228269 -113288768 + AT_rich Low_complexity Low_complexity 1 29 0 3 861 651 330 34 8 chr6 36228630 36228896 -113288141 + B4 SINE B4 1 273 -19 3 861 1325 294 77 5 chr6 36228900 36229340 -113287697 - Lx8 LINE L1 -450 7023 6552 3 861 255 370 46 23 chr6 36229472 36229602 -113287435 - MIR SINE MIR -90 172 40 3 861 1184 326 48 45 chr6 36231200 36231828 -113285209 + L1MA5 LINE L1 5536 6157 -143 3 861 2150 129 3 3 chr6 36231828 36232154 -113284883 - ORR1A3 LTR MaLR 0 326 1 3 861 1184 326 48 45 chr6 36232154 36232273 -113284764 + L1MA5 LINE L1 6158 6285 -15 3 861 23 33 0 0 chr6 36232849 36232879 -113284158 + AT_rich Low_complexity Low_complexity 1 30 0 3 861 229 333 95 17 chr6 36233000 36233116 -113283921 + HAL1 LINE L1 1754 1878 -629 3 861 207 0 0 0 chr6 36233345 36233368 -113283669 + (T)n Simple_repeat Simple_repeat 1 23 0 3 861 3293 31 15 0 chr6 36234460 36234850 -113282187 + MTA_Mm LTR MaLR 1 396 0 3 861 387 0 0 0 chr6 36235911 36235954 -113281083 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 861 439 306 63 13 chr6 36236020 36236179 -113280858 + B3 SINE B2 42 208 -8 3 861 5640 74 70 0 chr6 36237664 36238450 -113278587 + L1_Mus3 LINE L1 5797 6637 -1 3 861 1660 307 116 21 chr6 36238977 36240524 -113276513 - Lx9 LINE L1 -1741 5903 4166 3 861 305 335 18 24 chr6 36240530 36240698 -113276339 - Lx9 LINE L1 -1831 4049 3883 3 861 435 0 45 30 chr6 36241313 36241380 -113275657 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 3 861 652 363 32 61 chr6 36241770 36242181 -113274856 - Charlie25 DNA MER1_type -1295 1229 831 3 861 233 132 0 0 chr6 36243107 36243145 -113273892 + MLT1A1 LTR MaLR 302 339 -69 3 861 23 22 0 61 chr6 36243314 36243363 -113273674 + AT_rich Low_complexity Low_complexity 1 46 0 3 861 3829 244 93 75 chr6 36243589 36243718 -113273319 - RMER1C Other Other -1 1341 1200 3 861 287 0 53 0 chr6 36243718 36243756 -113273281 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 3 861 3829 244 93 75 chr6 36243756 36244728 -113272309 - RMER1C Other Other -143 1199 244 3 861 486 0 0 0 chr6 36244728 36244782 -113272255 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 861 3829 244 93 75 chr6 36244782 36244936 -113272101 - RMER1C Other Other -1099 243 63 3 861 393 314 151 74 chr6 36245598 36245856 -113271181 - B4 SINE B4 -9 283 6 3 861 245 214 57 0 chr6 36245876 36245946 -113271091 - L1MD3 LINE L1 -530 7352 7279 3 861 310 301 123 38 chr6 36246247 36246458 -113270579 - L1MD3 LINE L1 -1147 6848 6620 3 861 233 208 0 14 chr6 36246479 36246552 -113270485 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 861 480 208 85 0 chr6 36246723 36246829 -113270208 - ORR1D1 LTR MaLR 0 374 260 3 861 492 259 98 65 chr6 36247009 36247162 -113269875 - RSINE1 SINE B4 0 165 8 3 861 349 390 52 18 chr6 36247690 36247962 -113269075 - LTR16A LTR ERVL -12 439 159 3 861 233 113 0 86 chr6 36247976 36248034 -113269003 + T-rich Low_complexity Low_complexity 2 54 0 3 861 260 174 124 0 chr6 36248071 36248164 -113268873 - L1_Mur3 LINE L1 -821 5419 5286 3 861 459 0 0 0 chr6 36248243 36248294 -113268743 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 861 252 0 0 0 chr6 36248469 36248497 -113268540 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3 861 225 132 36 36 chr6 36248621 36248676 -113268361 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 861 369 305 104 61 chr6 36249248 36249527 -113267510 - B4A SINE B4 0 292 2 3 861 261 0 0 0 chr6 36250030 36250059 -113266978 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 861 34 0 0 0 chr6 36251115 36251149 -113265888 + AT_rich Low_complexity Low_complexity 1 34 0 3 861 28 61 0 0 chr6 36251342 36251391 -113265646 + AT_rich Low_complexity Low_complexity 1 49 0 3 861 314 210 25 8 chr6 36253138 36253258 -113263779 + (TA)n Simple_repeat Simple_repeat 1 122 0 3 861 373 156 19 39 chr6 36254076 36254230 -113262807 + (TCTCTG)n Simple_repeat Simple_repeat 4 154 0 3 861 341 198 12 0 chr6 36254246 36254327 -113262710 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 861 394 269 3 0 chr6 36254820 36255109 -113261928 + (CA)n Simple_repeat Simple_repeat 1 290 0 3 861 253 288 12 36 chr6 36255254 36255337 -113261700 - ID4_ SINE ID -1 82 2 3 861 2916 171 158 5 chr6 36256063 36256663 -113260374 - RLTR17 LTR ERVK 0 692 1 3 861 225 424 68 19 chr6 36256666 36256873 -113260164 - LTR16E1 LTR ERVL -235 303 87 3 861 21 36 0 0 chr6 36258452 36258480 -113258557 + AT_rich Low_complexity Low_complexity 1 28 0 3 861 1927 186 37 11 chr6 36258886 36259261 -113257776 - MTB_Mm LTR MaLR -7 400 16 3 861 278 83 0 0 chr6 36259650 36259686 -113257351 + U2 snRNA snRNA 1 36 -152 3 861 27 29 0 0 chr6 36260844 36260878 -113256159 + AT_rich Low_complexity Low_complexity 1 34 0 3 861 22 35 0 0 chr6 36261976 36262005 -113255032 + AT_rich Low_complexity Low_complexity 1 29 0 3 861 231 263 0 50 chr6 36262111 36262171 -113254866 - ID_B1 SINE B4 0 224 168 3 861 270 338 38 0 chr6 36262133 36262213 -113254824 - B1F2 SINE Alu -51 98 16 3 861 233 200 47 12 chr6 36262213 36262299 -113254738 + (TATG)n Simple_repeat Simple_repeat 2 90 0 3 861 391 346 19 19 chr6 36263165 36263327 -113253710 - RSINE1 SINE B4 -2 163 2 3 861 671 297 51 33 chr6 36263381 36263656 -113253381 + B4A SINE B4 1 280 -12 3 861 300 53 0 0 chr6 36263675 36263713 -113253324 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 861 276 392 18 37 chr6 36263935 36264152 -113252885 + MIR SINE MIR 49 261 -1 3 861 270 0 0 0 chr6 36264642 36264672 -113252365 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 861 229 196 59 0 chr6 36264673 36264724 -113252313 + L1M LINE L1 5368 5421 -891 3 861 210 281 0 0 chr6 36265987 36266051 -113250986 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 861 680 269 46 41 chr6 36266056 36266250 -113250787 - B3A SINE B2 -1 197 3 3 861 608 283 7 48 chr6 36266306 36266551 -113250486 - L1M3 LINE L1 -725 5443 5199 3 861 746 120 40 8 chr6 36266554 36266680 -113250357 - RMER17D LTR ERVK -3 886 757 3 861 2442 82 3 14 chr6 36267049 36267395 -113249642 - L1_Mus3 LINE L1 -527 6111 5770 3 861 3655 83 6 8 chr6 36267395 36267892 -113249145 + L1_Mus3 LINE L1 6142 6637 -1 3 861 1306 267 89 14 chr6 36267968 36268318 -113248719 + MTEa LTR MaLR 2 377 -2 3 861 293 296 92 59 chr6 36269025 36269395 -113247642 - L1MD2 LINE L1 -4888 1752 1399 3 861 625 303 34 30 chr6 36269580 36269890 -113247147 - L1MD2 LINE L1 -5526 1114 799 3 861 3800 91 55 11 chr6 36270254 36270821 -113246216 + Lx LINE L1 6060 6651 -3 3 861 1629 336 51 34 chr6 36270851 36271712 -113245325 - Lx8 LINE L1 -316 7157 6282 3 861 1107 77 0 14 chr6 36271712 36271848 -113245189 + B1_Mus1 SINE Alu 1 136 -12 3 861 324 0 0 0 chr6 36271848 36271884 -113245153 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 3 861 3187 47 23 3 chr6 36271918 36272306 -113244731 + MTA_Mm LTR MaLR 1 396 0 3 861 218 143 20 0 chr6 36272374 36272423 -113244614 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 861 226 140 35 17 chr6 36272479 36272537 -113244500 + (TTAAA)n Simple_repeat Simple_repeat 4 62 0 3 861 254 200 49 16 chr6 36272553 36272675 -113244362 + (TA)n Simple_repeat Simple_repeat 1 126 0 3 861 1964 297 74 23 chr6 36272682 36273779 -113243258 - Lx8 LINE L1 -1509 6187 5028 3 861 227 219 83 37 chr6 36273983 36274092 -113242945 + Lx8 LINE L1 7360 7473 0 3 861 287 329 23 67 chr6 36275139 36275281 -113241756 - MLT1G1 LTR MaLR -325 224 84 3 861 430 160 19 9 chr6 36276429 36276536 -113240501 + Lx9 LINE L1 7529 7636 -8 3 861 1154 276 3 36 chr6 36276691 36276999 -113240038 + Lx6 LINE L1 7154 7451 -9 3 861 2672 308 32 71 chr6 36277002 36278121 -113238916 + Lx4B LINE L1 5882 6953 -105 3 861 189 0 0 0 chr6 36278121 36278142 -113238895 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 861 2672 308 32 71 chr6 36278142 36278229 -113238808 + Lx4B LINE L1 6954 7040 -18 3 861 24 0 0 0 chr6 36278270 36278294 -113238743 + AT_rich Low_complexity Low_complexity 1 24 0 3 861 215 140 33 50 chr6 36278326 36278386 -113238651 + A-rich Low_complexity Low_complexity 5 63 0 3 861 621 213 57 35 chr6 36278915 36279109 -113237928 - MIR3 SINE MIR -9 199 2 3 861 450 0 0 0 chr6 36279174 36279224 -113237813 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 861 392 326 183 34 chr6 36281571 36281892 -113235145 - MLT1A LTR MaLR -5 369 1 3 861 494 70 0 14 chr6 36282252 36282324 -113234713 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 861 509 267 126 35 chr6 36282424 36282676 -113234361 - RMER20B LTR ERVK -119 397 132 3 861 1508 53 0 5 chr6 36283394 36283582 -113233455 - B2_Mm2 SINE B2 -8 187 1 3 861 509 0 16 0 chr6 36283906 36283967 -113233070 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 861 22 0 0 0 chr6 36284732 36284754 -113232283 + AT_rich Low_complexity Low_complexity 1 22 0 3 861 444 290 0 9 chr6 36286155 36286263 -113230774 + MTEa LTR MaLR 30 136 -243 3 861 756 291 15 10 chr6 36286601 36286806 -113230231 - B3 SINE B2 -6 210 5 3 861 661 281 103 60 chr6 36287050 36287399 -113229638 - MER47A DNA MER2_type 0 366 3 3 861 635 148 7 0 chr6 36287662 36287811 -113229226 + CT-rich Low_complexity Low_complexity 1 150 0 4 861 243 0 0 0 chr6 36287811 36287838 -113229199 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 861 463 340 14 14 chr6 36287850 36287993 -113229044 - B3A SINE B2 -46 152 10 4 861 240 35 0 0 chr6 36288128 36288157 -113228880 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4 861 412 331 118 19 chr6 36288430 36288692 -113228345 + B4A SINE B4 1 288 -4 4 861 269 82 20 0 chr6 36288802 36288851 -113228186 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 861 2289 176 9 19 chr6 36289200 36289623 -113227414 - MTC LTR MaLR -2 419 1 4 861 199 71 48 0 chr6 36290300 36290342 -113226695 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 861 182 161 0 0 chr6 36290474 36290505 -113226532 - MIR SINE MIR -56 152 122 4 861 340 250 97 15 chr6 36290933 36291067 -113225970 - MTEb LTR MaLR -25 354 210 4 861 800 250 36 23 chr6 36291741 36291962 -113225075 + MER2 DNA MER2_type 116 339 -6 4 861 306 67 0 0 chr6 36292495 36292540 -113224497 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 861 360 0 0 0 chr6 36292540 36292580 -113224457 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 861 488 334 105 45 chr6 36292657 36293190 -113223847 + Lx8 LINE L1 6900 7464 -9 4 861 243 152 0 0 chr6 36294316 36294362 -113222675 + GA-rich Low_complexity Low_complexity 1 46 0 4 861 7587 79 8 15 chr6 36294440 36296067 -113220970 + L1_Mus1 LINE L1 4962 6567 0 4 861 922 81 61 18 chr6 36296318 36296481 -113220556 + L1_Mus3 LINE L1 6467 6636 -2 4 861 2845 107 20 9 chr6 36296490 36296932 -113220105 + RMER12 LTR ERVK 321 767 -555 4 861 834 160 0 0 chr6 36296940 36297090 -113219947 + GA-rich Low_complexity Low_complexity 2 151 0 4 861 351 324 104 18 chr6 36297112 36297392 -113219645 + L1MEg LINE L1 1108 1411 -4673 4 861 295 123 14 14 chr6 36297400 36297474 -113219563 - Lx4A LINE L1 -11 7047 6974 4 861 2607 147 17 5 chr6 36297474 36297891 -113219146 + Lx4A LINE L1 6113 6534 -524 4 861 2909 53 48 3 chr6 36298863 36299242 -113217795 + MTA_Mm LTR MaLR 1 396 0 4 861 30 27 0 0 chr6 36300684 36300721 -113216316 + AT_rich Low_complexity Low_complexity 1 37 0 4 861 642 309 52 34 chr6 36302319 36302587 -113214450 - RMER15 LTR ERVL -36 539 267 4 861 185 329 0 81 chr6 36303884 36303970 -113213067 - L2b LINE L2 -6 3369 3291 4 861 232 335 66 42 chr6 36304363 36304650 -113212387 - L1MD3 LINE L1 -18 7977 7684 4 861 433 267 80 7 chr6 36304961 36305112 -113211925 + L1M5 LINE L1 2704 2865 -3281 4 861 455 323 66 3 chr6 36305260 36305595 -113211442 + L1MCc LINE L1 1166 1521 -4902 4 861 267 256 125 13 chr6 36305745 36305899 -113211138 + L1MCc LINE L1 1879 2046 -4991 4 861 280 286 47 23 chr6 36305980 36306109 -113210928 + L1MCc LINE L1 2244 2375 -4662 4 861 324 305 43 35 chr6 36306214 36306412 -113210625 + L1ME1 LINE L1 5960 6317 -17 4 861 226 235 0 42 chr6 36306540 36306611 -113210426 + MER106B DNA MER1_type 510 577 -482 4 107 38567 4 0 0 chr6 36306806 36312183 -113204854 + L1Md_A LINE L1 209 5586 -297 4 862 9023 2 0 0 chr6 36312183 36313179 -113203858 + L1Md_A LINE L1 5587 6582 0 4 862 42 0 0 0 chr6 36313179 36313221 -113203816 + AT_rich Low_complexity Low_complexity 1 42 0 4 862 809 340 14 39 chr6 36313531 36313944 -113203093 + Lx9 LINE L1 6894 7296 -348 4 862 1778 231 20 14 chr6 36313977 36314415 -113202622 + BGLII_B LTR ERVK 1 441 0 4 862 28 0 0 0 chr6 36314894 36314922 -113202115 + AT_rich Low_complexity Low_complexity 1 28 0 4 862 245 315 32 21 chr6 36315597 36315691 -113201346 - MIRb SINE MIR -6 262 168 4 862 513 84 0 0 chr6 36316268 36316339 -113200698 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 862 239 331 50 29 chr6 36317371 36317511 -113199526 + MIR3 SINE MIR 35 177 -31 4 862 425 250 107 30 chr6 36319640 36319809 -113197228 - RMER15 LTR ERVL -92 483 302 4 862 522 83 0 0 chr6 36320018 36320090 -113196947 + (TCC)n Simple_repeat Simple_repeat 1 72 0 4 862 272 442 66 23 chr6 36320210 36320467 -113196570 - LTR16B LTR ERVL -90 373 106 4 862 205 385 53 13 chr6 36321216 36321366 -113195671 + MIRc SINE MIR 47 202 -66 4 862 257 354 88 20 chr6 36321786 36321933 -113195104 - LTR16A LTR ERVL -75 376 220 4 862 622 332 10 10 chr6 36322613 36322811 -113194226 + ID_B1 SINE B4 19 216 -8 4 862 1134 158 197 59 chr6 36323659 36323948 -113193089 + ORR1A4 LTR MaLR 1 329 0 4 862 452 326 86 114 chr6 36323948 36324343 -113192694 + MLT1B LTR MaLR 3 386 -4 4 862 772 225 74 17 chr6 36325094 36325270 -113191767 - B3 SINE B2 -1 215 30 4 862 442 370 45 8 chr6 36325595 36325859 -113191178 + L2 LINE L2 2256 2529 -890 4 862 233 376 120 66 chr6 36326646 36326905 -113190132 + B4 SINE B4 7 279 -13 4 862 208 266 47 0 chr6 36326924 36326988 -113190049 + (CATATA)n Simple_repeat Simple_repeat 1 67 0 4 862 251 391 40 11 chr6 36328382 36328558 -113188479 - MLT1E2 LTR MaLR -53 452 272 4 862 269 314 102 42 chr6 36328626 36328792 -113188245 - MLT1E2 LTR MaLR -449 178 3 4 862 315 0 0 0 chr6 36329205 36329240 -113187797 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 862 533 73 0 24 chr6 36330362 36330446 -113186591 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 4 862 894 233 34 15 chr6 36330789 36330994 -113186043 + B3 SINE B2 2 210 -6 4 862 747 87 0 9 chr6 36334097 36334213 -113182824 + Lx LINE L1 6540 6654 0 4 862 358 268 68 92 chr6 36335495 36335820 -113181217 + CR1_Mam LINE CR1 1157 1473 -731 4 862 330 26 0 0 chr6 36335980 36336019 -113181018 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 862 239 343 111 0 chr6 36336075 36336174 -113180863 - MIRc SINE MIR -117 151 42 4 862 480 18 0 0 chr6 36336459 36336516 -113180521 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 862 216 195 0 0 chr6 36338118 36338159 -113178878 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 862 992 8 8 0 chr6 36340215 36340332 -113176705 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 4 862 217 338 0 12 chr6 36342073 36342154 -113174883 + GA-rich Low_complexity Low_complexity 3 82 0 4 862 468 0 0 0 chr6 36342669 36342721 -113174316 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 862 272 310 58 0 chr6 36342828 36342915 -113174122 + L2a LINE L2 3335 3426 0 4 862 466 309 42 16 chr6 36342910 36343101 -113173936 - MIRb SINE MIR -58 204 9 4 862 180 0 0 0 chr6 36346774 36346794 -113170243 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4 862 1442 138 23 27 chr6 36347696 36347956 -113169081 + Lx3B LINE L1 6710 6968 -5 4 862 3759 184 6 22 chr6 36348448 36349141 -113167896 - Lx5 LINE L1 -3 7047 6366 4 862 306 0 0 0 chr6 36350127 36350161 -113166876 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4 862 7726 41 4 0 chr6 36350730 36352317 -113164720 - L1Md_F2 LINE L1 -1 6581 4988 4 862 1218 85 51 0 chr6 36352320 36352497 -113164540 - B2_Mm2 SINE B2 -9 186 1 4 862 25 31 0 0 chr6 36352710 36352742 -113164295 + AT_rich Low_complexity Low_complexity 1 32 0 4 862 21 0 0 0 chr6 36353314 36353335 -113163702 + AT_rich Low_complexity Low_complexity 1 21 0 4 862 219 36 0 0 chr6 36354462 36354490 -113162547 + (A)n Simple_repeat Simple_repeat 1 28 0 4 862 643 184 56 0 chr6 36354570 36354695 -113162342 - B1_Mur4 SINE Alu -1 149 18 4 862 183 42 0 0 chr6 36355039 36355063 -113161974 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 862 199 93 23 23 chr6 36357626 36357670 -113159367 + (TTA)n Simple_repeat Simple_repeat 2 45 0 4 862 4832 72 6 2 chr6 36357864 36358500 -113158537 - L1_Mus3 LINE L1 -5 6633 5995 4 862 295 98 0 0 chr6 36358501 36358542 -113158495 - L1_Mus3 LINE L1 -717 5921 5881 4 862 597 273 18 138 chr6 36359148 36359365 -113157672 - MTE2a LTR MaLR -188 191 1 4 862 615 27 0 0 chr6 36359923 36359996 -113157041 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 862 431 341 68 27 chr6 36360687 36360982 -113156055 - L1MC3 LINE L1 -123 7662 7356 4 862 946 189 78 24 chr6 36361282 36361488 -113155549 - URR1B DNA MER1_type 0 225 9 4 862 525 252 129 31 chr6 36361585 36361872 -113155165 + Lx8 LINE L1 7131 7445 -28 4 862 188 35 35 0 chr6 36362212 36362241 -113154796 + (TTTAA)n Simple_repeat Simple_repeat 2 31 0 4 862 504 0 0 0 chr6 36362399 36362455 -113154582 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 4 862 297 316 73 22 chr6 36363175 36363311 -113153726 - B1F SINE Alu -6 143 1 4 862 800 299 76 10 chr6 36364282 36364583 -113152454 + Lx6 LINE L1 7114 7434 -26 4 862 578 299 56 40 chr6 36364882 36365133 -113151904 - MER2 DNA MER2_type -55 290 36 4 862 204 167 0 0 chr6 36366293 36366341 -113150696 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 862 687 25 0 0 chr6 36366341 36366422 -113150615 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 862 1286 234 50 81 chr6 36366505 36366692 -113150345 - ORR1D1 LTR MaLR -3 371 178 4 862 486 0 0 0 chr6 36366692 36366746 -113150291 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 862 1286 234 50 81 chr6 36366746 36366939 -113150098 - ORR1D1 LTR MaLR -197 177 3 4 862 396 0 0 0 chr6 36367618 36367662 -113149375 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 862 203 147 0 0 chr6 36369157 36369191 -113147846 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 4 862 218 350 88 20 chr6 36369495 36369597 -113147440 + PB1D9 SINE Alu 1 109 -11 4 862 882 76 0 0 chr6 36370427 36370546 -113146491 + (TC)n Simple_repeat Simple_repeat 2 120 0 4 862 225 0 0 0 chr6 36370546 36370570 -113146467 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 862 467 317 123 51 chr6 36372313 36372629 -113144408 - MER44A DNA MER2_type 0 339 1 4 862 229 167 0 0 chr6 36372875 36372923 -113144114 - L1MD LINE L1 -2367 3779 3732 4 862 657 303 36 21 chr6 36373151 36373431 -113143606 + B4A SINE B4 3 286 -6 5 862 24 32 0 0 chr6 36373524 36373555 -113143482 + AT_rich Low_complexity Low_complexity 1 31 0 5 862 184 248 127 45 chr6 36374016 36374126 -113142911 + MIRb SINE MIR 132 250 -18 5 862 22 0 0 0 chr6 36374245 36374267 -113142770 + AT_rich Low_complexity Low_complexity 1 22 0 5 862 261 0 0 0 chr6 36375089 36375118 -113141919 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 5 862 294 29 0 0 chr6 36376991 36377026 -113140011 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 862 628 32 21 21 chr6 36377026 36377121 -113139916 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 5 862 1414 259 90 29 chr6 36378697 36379242 -113137795 - Lx9 LINE L1 -1 7643 7066 5 862 21 36 0 0 chr6 36380095 36380123 -113136914 + AT_rich Low_complexity Low_complexity 1 28 0 5 862 330 67 0 0 chr6 36381231 36381276 -113135761 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 5 862 274 254 15 0 chr6 36382147 36382214 -113134823 + Lx7 LINE L1 6946 7013 -683 5 862 1285 245 60 29 chr6 36382192 36382575 -113134462 + Lx6 LINE L1 7066 7460 0 5 862 204 125 0 0 chr6 36382577 36382609 -113134428 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 5 862 5724 6 0 0 chr6 36383112 36383744 -113133293 + L1Md_T LINE L1 5951 6582 0 5 862 396 0 0 0 chr6 36384498 36384542 -113132495 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 862 225 132 0 0 chr6 36384615 36384653 -113132384 + (CCTG)n Simple_repeat Simple_repeat 1 38 0 5 862 426 209 123 9 chr6 36385101 36385207 -113131830 - ID_B1 SINE B4 -26 198 81 5 862 777 311 67 12 chr6 36385929 36386183 -113130854 - B4A SINE B4 -23 269 2 5 862 431 18 18 0 chr6 36388278 36388334 -113128703 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 862 423 0 0 0 chr6 36389781 36389828 -113127209 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 862 561 301 22 0 chr6 36390168 36390304 -113126733 + RSINE1 SINE B4 2 140 -25 5 862 555 16 0 0 chr6 36390304 36390368 -113126669 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 862 185 346 164 51 chr6 36390605 36390800 -113126237 - L3 LINE CR1 -455 4034 3818 5 862 798 199 7 0 chr6 36393031 36393177 -113123860 - B1_Mur3 SINE Alu -2 147 1 5 862 242 395 108 5 chr6 36393366 36393552 -113123485 + MIRb SINE MIR 54 258 -10 5 862 271 327 55 27 chr6 36393840 36393950 -113123087 + MIRb SINE MIR 7 119 -149 5 862 1243 80 0 0 chr6 36394905 36395067 -113121970 + B2_Mm1t SINE B2 1 162 -31 5 862 362 21 0 21 chr6 36395068 36395116 -113121921 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5 862 1893 55 0 0 chr6 36395629 36395865 -113121172 - L1_Mus1 LINE L1 0 6567 6332 5 862 27 0 0 0 chr6 36395964 36395991 -113121046 + AT_rich Low_complexity Low_complexity 1 27 0 5 862 241 323 120 10 chr6 36396792 36396892 -113120145 + MER5A1 DNA MER1_type 52 162 -4 5 862 22 0 0 0 chr6 36397131 36397153 -113119884 + AT_rich Low_complexity Low_complexity 1 22 0 5 862 402 300 61 70 chr6 36397579 36398038 -113118999 + L1_Mur3 LINE L1 1246 1700 -4180 5 862 1459 191 100 34 chr6 36398108 36398487 -113118550 + RMER1C Other Other 937 1340 -2 5 862 534 330 33 27 chr6 36398483 36398782 -113118255 + L1_Mur3 LINE L1 1688 1988 -3892 5 862 644 289 4 18 chr6 36398781 36399056 -113117981 + L1_Mur3 LINE L1 3539 3809 -2071 5 862 1647 174 32 91 chr6 36399066 36399440 -113117597 + ORR1B1 LTR MaLR 43 394 0 5 862 1129 225 51 16 chr6 36399442 36399817 -113117220 + L1_Mur3 LINE L1 3808 4195 -1685 5 862 617 228 18 6 chr6 36399901 36400064 -113116973 + L1_Mur3 LINE L1 4164 4328 -1552 5 862 655 230 89 10 chr6 36400068 36400270 -113116767 + L1_Mur3 LINE L1 4696 4913 -967 5 862 1900 249 18 7 chr6 36400299 36400908 -113116129 - Lx6 LINE L1 -26 7434 6455 5 862 323 263 51 26 chr6 36400943 36401099 -113115938 + L1_Mur3 LINE L1 4938 5097 -783 5 862 494 16 0 16 chr6 36401377 36401441 -113115596 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 5 862 958 138 7 0 chr6 36402723 36402868 -113114169 + B1_Mus1 SINE Alu 2 147 -1 5 862 906 186 23 47 chr6 36403934 36404148 -113112889 - ORR1D1 LTR MaLR -2 372 164 5 862 257 288 0 0 chr6 36404155 36404214 -113112823 + GA-rich Low_complexity Low_complexity 3 61 0 5 862 713 236 67 28 chr6 36404214 36404393 -113112644 - ORR1D1 LTR MaLR -188 186 1 5 862 279 0 0 0 chr6 36406406 36406437 -113110600 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 862 192 97 0 0 chr6 36406481 36406512 -113110525 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 862 29 0 0 0 chr6 36406513 36406542 -113110495 + AT_rich Low_complexity Low_complexity 1 29 0 5 862 864 283 100 24 chr6 36407112 36407481 -113109556 + Lx8 LINE L1 6877 7273 -200 5 862 258 136 0 0 chr6 36407773 36407817 -113109220 + (ATG)n Simple_repeat Simple_repeat 1 44 0 5 862 5740 82 36 0 chr6 36408366 36409148 -113107889 - L1_Mus4 LINE L1 0 6636 5827 5 862 204 282 55 27 chr6 36411317 36411390 -113105647 - L3 LINE CR1 -220 4269 4195 5 862 183 64 0 113 chr6 36412052 36412105 -113104932 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 862 187 364 61 15 chr6 36412852 36412983 -113104054 + MIRm SINE MIR 27 163 -113 5 862 5085 57 25 0 chr6 36413103 36413748 -113103289 + L1_Mus1 LINE L1 5904 6564 -3 5 862 450 0 0 0 chr6 36413753 36413803 -113103234 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 5 862 378 0 0 0 chr6 36414636 36414678 -113102359 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 862 22 0 0 0 chr6 36415120 36415142 -113101895 + AT_rich Low_complexity Low_complexity 1 22 0 5 862 414 57 0 0 chr6 36415778 36415831 -113101206 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 862 471 351 89 8 chr6 36415882 36416140 -113100897 - B4A SINE B4 -10 282 4 5 862 319 320 30 0 chr6 36416858 36416958 -113100079 - MIRb SINE MIR -67 201 99 5 862 295 363 48 54 chr6 36417461 36417627 -113099410 + B4 SINE B4 127 291 -1 5 862 262 295 0 0 chr6 36418032 36418127 -113098910 - L1M LINE L1 -817 5423 5329 5 862 195 42 0 0 chr6 36418258 36418282 -113098755 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 862 342 0 0 0 chr6 36421991 36422029 -113095008 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 862 238 317 37 46 chr6 36422419 36422528 -113094509 - MLT1A1 LTR MaLR -5 403 296 5 862 28 0 0 0 chr6 36424178 36424206 -113092831 + AT_rich Low_complexity Low_complexity 1 28 0 5 862 213 39 0 0 chr6 36426518 36426544 -113090493 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 5 862 315 244 16 32 chr6 36426882 36427005 -113090032 - Lx8 LINE L1 0 7473 7353 5 862 258 105 0 0 chr6 36427695 36427733 -113089304 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 5 862 469 228 61 9 chr6 36429474 36429589 -113087448 + B1_Mus1 SINE Alu 11 131 -17 5 862 27 0 0 0 chr6 36430677 36430704 -113086333 + AT_rich Low_complexity Low_complexity 1 27 0 5 862 249 33 0 0 chr6 36430731 36430761 -113086276 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 862 385 333 35 0 chr6 36430832 36430973 -113086064 - B1F1 SINE Alu -3 146 1 5 862 453 235 181 40 chr6 36432014 36432191 -113084846 + B3 SINE B2 2 203 -13 5 862 510 17 0 0 chr6 36432270 36432329 -113084708 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 862 3075 75 9 0 chr6 36432437 36432874 -113084163 + L1_Mus2 LINE L1 5769 6209 -357 5 862 183 213 92 62 chr6 36433073 36433138 -113083899 + L2a LINE L2 3359 3425 -1 5 862 290 26 26 0 chr6 36433559 36433598 -113083439 + (GGGA)n Simple_repeat Simple_repeat 3 42 0 5 862 1120 311 41 30 chr6 36434590 36434994 -113082043 + MTE2b LTR MaLR 6 405 -14 5 862 183 100 0 0 chr6 36435187 36435217 -113081820 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 862 344 293 8 17 chr6 36437536 36437654 -113079383 + CT-rich Low_complexity Low_complexity 1 117 0 5 863 389 308 41 7 chr6 36438647 36438794 -113078243 + RSINE1 SINE B4 2 153 -12 5 863 225 197 0 0 chr6 36439460 36439521 -113077516 + A-rich Low_complexity Low_complexity 1 61 0 5 863 489 17 0 0 chr6 36440401 36440459 -113076578 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 863 558 263 27 38 chr6 36440596 36440782 -113076255 - B3A SINE B2 -13 185 2 5 863 680 268 94 18 chr6 36440876 36441047 -113075990 - ID_B1 SINE B4 -17 207 24 5 863 914 268 71 37 chr6 36441068 36441420 -113075617 + MTE2a LTR MaLR 12 375 -4 5 863 530 298 37 67 chr6 36441561 36442116 -113074921 - L1MC2 LINE L1 -287 6057 5530 5 863 777 199 0 0 chr6 36442116 36442277 -113074760 + (TA)n Simple_repeat Simple_repeat 1 161 0 5 863 2761 223 14 9 chr6 36442445 36443006 -113074031 - Lx5 LINE L1 -12 7038 6475 5 863 526 309 129 25 chr6 36443007 36443534 -113073503 - L1MC2 LINE L1 -803 5343 4762 5 863 181 167 18 18 chr6 36443540 36443595 -113073442 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 863 530 248 8 8 chr6 36444693 36444827 -113072210 - MLT2C1 LTR ERVL -187 210 77 5 863 420 20 0 0 chr6 36445988 36446037 -113071000 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 863 343 356 40 81 chr6 36446083 36446257 -113070780 - B4A SINE B4 -117 175 9 5 863 30 45 0 0 chr6 36446638 36446682 -113070355 + AT_rich Low_complexity Low_complexity 1 44 0 5 863 33793 35 0 1 chr6 36446870 36452529 -113064508 + L1Md_T LINE L1 1 5589 -297 5 863 8977 8 0 0 chr6 36452529 36453525 -113063512 + L1Md_T LINE L1 5590 6585 0 5 863 324 159 70 9 chr6 36453593 36453707 -113063330 + (TA)n Simple_repeat Simple_repeat 1 121 0 5 863 3157 56 2 8 chr6 36453714 36454112 -113062925 - MTA_Mm LTR MaLR 0 396 1 5 863 7516 67 35 70 chr6 36454112 36455250 -113061787 - MTA_Mm-int LTR MaLR 0 1098 1 5 863 2980 73 5 10 chr6 36455250 36455652 -113061385 - MTA_Mm LTR MaLR 0 400 1 5 863 184 153 59 0 chr6 36455655 36455740 -113061297 + (TA)n Simple_repeat Simple_repeat 1 90 0 5 863 840 73 0 0 chr6 36456220 36456329 -113060708 - B1_Mm SINE Alu -1 146 38 5 863 1236 48 0 0 chr6 36456424 36456570 -113060467 + B1_Mus2 SINE Alu 2 147 0 5 863 23 0 0 0 chr6 36457788 36457811 -113059226 + AT_rich Low_complexity Low_complexity 1 23 0 5 863 626 205 0 5 chr6 36459078 36459308 -113057729 + (CA)n Simple_repeat Simple_repeat 1 228 0 5 863 462 275 0 15 chr6 36461615 36461748 -113055289 + Lx8 LINE L1 7211 7341 -132 5 863 1953 39 16 0 chr6 36461750 36462004 -113055033 - L1_Mm LINE L1 -1302 4581 4324 6 863 385 70 0 0 chr6 36462004 36462061 -113054976 + L1_Mus2 LINE L1 6510 6566 0 6 863 791 21 0 10 chr6 36462087 36462185 -113054852 + (GGAA)n Simple_repeat Simple_repeat 3 99 0 6 863 1055 53 0 32 chr6 36462505 36462661 -113054376 + L1Md_F3 LINE L1 6434 6584 0 6 863 243 0 0 0 chr6 36464393 36464420 -113052617 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 863 240 35 0 0 chr6 36464640 36464669 -113052368 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 6 863 597 282 0 0 chr6 36464669 36464793 -113052244 - B1_Mur1 SINE Alu -20 129 6 6 863 312 300 0 0 chr6 36465066 36465146 -113051891 + ID4 SINE ID 2 81 -2 6 863 820 184 7 33 chr6 36466941 36467093 -113049944 + B1_Mur3 SINE Alu 1 148 -1 6 863 24 32 0 0 chr6 36467696 36467727 -113049310 + AT_rich Low_complexity Low_complexity 1 31 0 6 863 1398 51 0 0 chr6 36467953 36468129 -113048908 - L1_Mus2 LINE L1 0 6566 6391 6 863 328 0 42 21 chr6 36468867 36468915 -113048122 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 863 657 119 0 0 chr6 36470207 36470308 -113046729 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 863 224 255 0 0 chr6 36470317 36470364 -113046673 - ID4_ SINE ID -19 64 18 6 863 417 178 29 30 chr6 36471125 36471238 -113045799 - L1_Mur3 LINE L1 -2429 5453 5322 6 863 354 45 0 0 chr6 36471274 36471318 -113045719 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 863 267 31 0 0 chr6 36472073 36472105 -113044932 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 863 275 350 181 11 chr6 36477126 36477308 -113039729 + MER20 DNA MER1_type 2 214 -5 6 863 36 40 0 0 chr6 36478333 36478383 -113038654 + AT_rich Low_complexity Low_complexity 1 50 0 6 863 327 177 0 0 chr6 36479195 36479257 -113037780 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 863 21 36 0 0 chr6 36479517 36479545 -113037492 + AT_rich Low_complexity Low_complexity 1 28 0 6 863 249 260 51 25 chr6 36479711 36479790 -113037247 - PB1D10 SINE Alu 0 117 37 6 863 288 53 0 0 chr6 36479879 36479917 -113037120 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 6 863 250 307 136 0 chr6 36480400 36480488 -113036549 - MER5A DNA MER1_type -89 100 1 6 863 618 86 3 14 chr6 36480614 36480730 -113036307 - ORR1B2 LTR MaLR -259 135 1 6 863 1503 239 114 0 chr6 36480738 36481114 -113035923 - MTD LTR MaLR 0 419 1 6 863 284 318 45 37 chr6 36481119 36481253 -113035784 - MTD-int LTR MaLR -6 1252 1118 6 863 1186 54 0 20 chr6 36481253 36481404 -113035633 + B1_Mus1 SINE Alu 1 148 0 6 863 315 71 0 0 chr6 36481404 36481446 -113035591 + (A)n Simple_repeat Simple_repeat 1 42 0 6 863 523 181 68 186 chr6 36481449 36481686 -113035351 - MTD-int LTR MaLR -124 1134 926 6 863 388 264 132 20 chr6 36481681 36481832 -113035205 - MTD-int LTR MaLR -1090 168 1 6 863 581 216 230 32 chr6 36481832 36482019 -113035018 - MTD LTR MaLR 0 419 196 6 863 614 138 0 9 chr6 36482019 36482129 -113034908 + (TTTC)n Simple_repeat Simple_repeat 2 110 0 6 863 1927 209 65 7 chr6 36482167 36482597 -113034440 - Lx5 LINE L1 -8 7042 6588 6 863 1540 121 19 26 chr6 36482655 36482919 -113034118 - Lx LINE L1 -3 6651 6390 6 863 938 334 63 30 chr6 36483044 36483473 -113033564 - RLTR17 LTR ERVK -126 566 124 6 863 1044 221 12 0 chr6 36483511 36483748 -113033289 - Lx5 LINE L1 -494 6556 6330 6 863 772 135 188 0 chr6 36483747 36483917 -113033120 + L1_Mur3 LINE L1 2445 2646 -3234 6 863 467 274 17 0 chr6 36483919 36484036 -113033001 - MTD LTR MaLR -279 140 22 6 863 976 114 0 0 chr6 36484047 36484187 -113032850 - B1_Mus1 SINE Alu -2 146 7 6 863 226 67 44 0 chr6 36484204 36484249 -113032788 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 6 863 16948 129 7 4 chr6 36484280 36487991 -113029046 + L1_Mus3 LINE L1 2916 6637 -1 6 863 243 88 0 0 chr6 36488082 36488116 -113028921 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 6 863 238 250 38 124 chr6 36489224 36489329 -113027708 - B1_Mm SINE Alu -50 97 2 6 863 23 54 0 0 chr6 36489395 36489432 -113027605 + AT_rich Low_complexity Low_complexity 1 37 0 6 863 5108 66 1 1 chr6 36489511 36490193 -113026844 - L1Md_F2 LINE L1 0 6582 5915 6 863 25 31 0 0 chr6 36491123 36491155 -113025882 + AT_rich Low_complexity Low_complexity 1 32 0 6 863 181 245 36 54 chr6 36493209 36493265 -113023772 + MIRc SINE MIR 62 116 -152 6 863 335 267 104 12 chr6 36493366 36493529 -113023508 + MER2 DNA MER2_type 93 270 -75 6 863 257 374 28 0 chr6 36494054 36494161 -113022876 - MIRc SINE MIR -123 145 36 6 863 369 0 0 0 chr6 36494238 36494279 -113022758 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 863 465 19 0 0 chr6 36494325 36494379 -113022658 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 863 268 317 87 19 chr6 36494533 36494636 -113022401 - B1F SINE Alu 0 120 11 6 863 588 286 23 0 chr6 36494714 36494889 -113022148 - B3A SINE B2 -18 180 2 6 863 182 288 60 15 chr6 36495027 36495094 -113021943 - MIRb SINE MIR -99 169 100 6 863 249 305 32 7 chr6 36496428 36496583 -113020454 + (TATG)n Simple_repeat Simple_repeat 4 162 0 6 863 1234 266 50 61 chr6 36498775 36499156 -113017881 - MTD LTR MaLR 0 419 33 6 863 845 175 155 0 chr6 36499156 36499350 -113017687 + URR1A DNA MER1_type 3 226 0 6 863 1234 266 50 61 chr6 36499350 36499392 -113017645 - MTD LTR MaLR -387 32 1 6 863 26 0 0 0 chr6 36499594 36499620 -113017417 + AT_rich Low_complexity Low_complexity 1 26 0 6 863 338 268 26 21 chr6 36499709 36499837 -113017200 + L1MD LINE L1 3943 4068 -2078 6 863 587 302 86 23 chr6 36500001 36500526 -113016511 + L1MD LINE L1 4507 5064 -1082 1 863 3871 56 3 98 chr6 36500556 36501129 -113015908 - MURVY-LTR LTR ERV1 0 519 1 2 863 26 30 0 0 chr6 36501161 36501194 -113015843 + AT_rich Low_complexity Low_complexity 1 33 0 3 863 3326 36 8 0 chr6 36501219 36501612 -113015425 + MTA_Mm LTR MaLR 1 396 0 4 863 8415 62 9 1 chr6 36501612 36502701 -113014336 + MTA_Mm-int LTR MaLR 1 1098 0 4 863 3367 35 5 0 chr6 36502701 36503095 -113013942 + MTA_Mm LTR MaLR 1 396 0 4 863 422 323 106 56 chr6 36503095 36503377 -113013660 + B4 SINE B4 12 292 0 5 863 477 122 0 0 chr6 36503398 36503472 -113013565 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 863 23 0 0 0 chr6 36503473 36503496 -113013541 + AT_rich Low_complexity Low_complexity 1 23 0 7 863 1014 180 71 0 chr6 36504152 36504363 -113012674 - URR1A DNA MER1_type 0 226 1 8 863 569 337 17 0 chr6 36504765 36504946 -113012091 + MT2A LTR ERVL 264 447 -86 9 863 306 0 0 0 chr6 36504954 36504988 -113012049 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 863 1399 116 32 0 chr6 36505523 36505739 -113011298 - Lx2 LINE L1 0 6997 6775 1 863 6058 127 42 16 chr6 36505739 36507272 -113009765 - Lx2 LINE L1 -354 6643 5070 1 863 4847 143 17 33 chr6 36507270 36508048 -113008989 + Lx2 LINE L1 4158 4928 -949 1 863 1098 63 28 0 chr6 36508048 36508190 -113008847 - B1_Mus1 SINE Alu -2 146 1 1 863 4847 143 17 33 chr6 36508190 36508352 -113008685 + L1_Mur2 LINE L1 4929 5083 -794 1 863 319 352 27 91 chr6 36509531 36509828 -113007209 - ORR1E LTR MaLR -18 341 64 1 863 9946 46 1 1 chr6 36510248 36512254 -113004783 - L1Md_F2 LINE L1 -13 6569 4563 1 863 871 305 67 36 chr6 36512451 36512781 -113004256 - MLT1A0 LTR MaLR 0 365 26 1 863 901 194 0 0 chr6 36513044 36513204 -113003833 - Lx5 LINE L1 -445 6605 6446 1 863 360 235 132 29 chr6 36513206 36513342 -113003695 + Lx5 LINE L1 6901 7050 0 1 863 203 162 0 26 chr6 36513401 36513439 -113003598 + CT-rich Low_complexity Low_complexity 3 39 0 1 863 377 275 137 39 chr6 36514459 36514845 -113002192 - L1MC4a LINE L1 0 7995 7572 1 863 526 351 144 22 chr6 36515280 36515592 -113001445 - MLT1A0 LTR MaLR -1 364 15 2 863 338 244 119 22 chr6 36515610 36515744 -113001293 - L1MC4a LINE L1 -420 7575 7429 1 863 255 320 0 19 chr6 36515761 36515866 -113001171 + RMER12 LTR ERVK 750 852 -470 2 863 768 282 46 65 chr6 36515951 36516368 -113000669 - L1MC4a LINE L1 -763 7119 6711 1 863 3723 90 8 13 chr6 36517597 36518128 -112998909 - L1_Mus3 LINE L1 -5 6633 6106 2 863 414 0 0 0 chr6 36518485 36518531 -112998506 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 863 263 96 0 19 chr6 36518574 36518627 -112998410 + (TTTTTG)n Simple_repeat Simple_repeat 1 52 0 2 863 213 220 20 0 chr6 36519814 36519864 -112997173 - B4 SINE B4 -241 51 1 2 863 289 289 88 15 chr6 36520295 36520432 -112996605 + B1F SINE Alu 1 147 -2 2 863 26849 75 2 6 chr6 36521199 36525768 -112991269 - L1Md_F2 LINE L1 0 6582 2034 2 863 12122 24 0 0 chr6 36525767 36527930 -112989107 - L1Md_T LINE L1 0 6582 4420 2 863 5437 80 2 12 chr6 36527930 36528434 -112988603 - L1Md_F2 LINE L1 -3832 2051 1551 2 863 2294 124 145 19 chr6 36528434 36528862 -112988175 + RLTR45 LTR ERVK 1 482 0 2 863 5437 112 23 4 chr6 36528862 36530011 -112987026 - L1Md_F2 LINE L1 -4333 1550 380 2 863 493 326 78 22 chr6 36530135 36530367 -112986670 - B4A SINE B4 0 292 48 3 863 267 103 0 0 chr6 36530894 36530933 -112986104 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 3 863 746 307 62 23 chr6 36531037 36531297 -112985740 - B4A SINE B4 -21 271 2 3 863 320 304 33 56 chr6 36531331 36531544 -112985493 + L1MD LINE L1 3944 4151 -1995 3 863 695 146 203 0 chr6 36531673 36531796 -112985241 + B1_Mur4 SINE Alu 2 149 -1 3 863 227 87 43 0 chr6 36531796 36531842 -112985195 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 3 863 343 290 75 79 chr6 36531883 36532149 -112984888 - L1MD LINE L1 -2257 3889 3625 3 863 201 39 0 0 chr6 36532603 36532629 -112984408 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 863 375 397 36 34 chr6 36532827 36533275 -112983762 + L1M5 LINE L1 3709 4157 -1989 3 863 1346 271 5 64 chr6 36534152 36534589 -112982448 - Lx6 LINE L1 -26 7434 7024 3 863 282 87 0 0 chr6 36534994 36535040 -112981997 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 863 311 343 46 27 chr6 36535349 36535568 -112981469 + L1MEb LINE L1 843 1065 -5071 4 863 456 292 79 57 chr6 36535684 36535913 -112981124 + B4A SINE B4 15 248 -44 4 863 240 77 38 19 chr6 36536089 36536142 -112980895 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 863 800 348 73 37 chr6 36536180 36536744 -112980293 + L1MEb LINE L1 2317 2905 -3241 4 863 2195 188 28 56 chr6 36536744 36537313 -112979724 + RLTR31_Mur LTR ERVK 1 553 0 4 863 800 358 55 46 chr6 36537313 36537557 -112979480 + L1MEb LINE L1 2906 3128 -3018 4 863 273 22 21 42 chr6 36538113 36538161 -112978876 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 4 863 555 274 167 0 chr6 36538369 36538537 -112978500 + B3 SINE B2 5 200 -16 4 863 297 75 0 0 chr6 36538701 36538741 -112978296 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 4 863 438 129 0 0 chr6 36539121 36539206 -112977831 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 863 810 218 24 58 chr6 36539206 36539435 -112977602 + ORR1D1 LTR MaLR 157 378 0 4 863 840 278 85 48 chr6 36539445 36539980 -112977057 + L1MA7 LINE L1 5050 5648 -652 5 863 360 0 0 0 chr6 36539980 36540020 -112977017 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 863 840 276 89 74 chr6 36540020 36540681 -112976356 + L1MA7 LINE L1 5644 6280 -11 5 863 5931 115 20 13 chr6 36542009 36542909 -112974128 + Lx LINE L1 5749 6654 0 5 863 470 321 29 0 chr6 36543156 36543296 -112973741 + B1_Mur1 SINE Alu 4 147 -2 5 863 23 54 0 0 chr6 36543365 36543402 -112973635 + AT_rich Low_complexity Low_complexity 1 37 0 5 863 369 0 0 0 chr6 36543614 36543655 -112973382 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 863 500 241 232 30 chr6 36543662 36543837 -112973200 - B3 SINE B2 0 216 11 5 863 889 164 7 0 chr6 36545093 36545239 -112971798 + B1_Mur2 SINE Alu 1 147 -2 5 863 191 88 29 0 chr6 36545239 36545273 -112971764 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 5 863 28 0 0 0 chr6 36545922 36545950 -112971087 + AT_rich Low_complexity Low_complexity 1 28 0 5 863 286 252 119 0 chr6 36545963 36546064 -112970973 + MLT1B LTR MaLR 1 108 -266 6 863 288 77 0 0 chr6 36546088 36546127 -112970910 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 863 289 293 62 95 chr6 36546301 36546512 -112970525 + MLT1B LTR MaLR 162 374 0 6 863 1562 207 24 35 chr6 36548216 36548592 -112968445 - ORR1D1 LTR MaLR 0 374 3 6 863 929 318 99 32 chr6 36549331 36549955 -112967082 + Lx8 LINE L1 6807 7472 -1 6 863 512 326 20 67 chr6 36550823 36550960 -112966077 + B4A SINE B4 6 139 -153 6 863 1922 135 97 20 chr6 36550960 36551301 -112965736 + ORR1B2 LTR MaLR 1 367 0 6 863 512 326 20 67 chr6 36551301 36551416 -112965621 + B4A SINE B4 140 246 -46 6 863 371 21 21 0 chr6 36551433 36551481 -112965556 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 863 35 24 0 0 chr6 36551487 36551529 -112965508 + AT_rich Low_complexity Low_complexity 1 42 0 6 863 1672 46 5 0 chr6 36551655 36551871 -112965166 - L1_Mus2 LINE L1 -43 6523 6307 6 863 243 25 25 0 chr6 36551867 36551907 -112965130 + L1_Mus2 LINE L1 6525 6565 -1 6 863 462 165 18 9 chr6 36551934 36552044 -112964993 + Lx7 LINE L1 7585 7695 -1 6 863 1172 62 7 0 chr6 36553133 36553279 -112963758 + B1_Mus1 SINE Alu 2 148 0 7 863 774 124 0 0 chr6 36553293 36553414 -112963623 + (GAAAA)n Simple_repeat Simple_repeat 3 123 0 7 863 549 330 73 83 chr6 36553460 36553787 -112963250 - ORR1E LTR MaLR -35 324 1 7 863 487 273 97 38 chr6 36553978 36554298 -112962739 + L1_Mur3 LINE L1 3441 3779 -2101 7 863 328 297 34 5 chr6 36554298 36554413 -112962624 - B1_Mus1 SINE Alu -12 137 18 7 863 274 309 49 0 chr6 36554997 36555078 -112961959 + L3 LINE CR1 4349 4433 -56 7 863 755 75 9 0 chr6 36555250 36555357 -112961680 + (GGAGA)n Simple_repeat Simple_repeat 5 112 0 7 863 24 32 0 0 chr6 36556453 36556484 -112960553 + AT_rich Low_complexity Low_complexity 1 31 0 7 863 181 0 0 65 chr6 36556912 36556943 -112960094 + (TAA)n Simple_repeat Simple_repeat 2 30 0 7 863 252 0 0 0 chr6 36557295 36557323 -112959714 + (T)n Simple_repeat Simple_repeat 1 28 0 7 863 429 36 0 0 chr6 36557929 36557984 -112959053 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 863 351 0 0 0 chr6 36557984 36558022 -112959015 + (GA)n Simple_repeat Simple_repeat 1 39 0 8 863 289 319 44 15 chr6 36558892 36559029 -112958008 - LTR90B LTR LTR 0 796 656 8 863 225 307 153 24 chr6 36559787 36559957 -112957080 - Charlie18a DNA MER1_type -81 261 70 8 863 180 0 0 0 chr6 36560547 36560567 -112956470 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 863 219 368 66 0 chr6 36561044 36561150 -112955887 + B1F SINE Alu 20 132 -17 8 863 6112 54 3 3 chr6 36561153 36561926 -112955111 - L1Md_F2 LINE L1 0 6582 5810 8 863 210 150 0 0 chr6 36563865 36563905 -112953132 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 8 863 369 62 0 0 chr6 36564024 36564072 -112952965 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 863 1417 203 95 13 chr6 36565484 36565863 -112951174 + Lx9 LINE L1 7232 7641 -3 8 863 1024 134 6 11 chr6 36566094 36566268 -112950769 - L1_Mus2 LINE L1 -1 6565 6393 9 863 316 277 99 78 chr6 36566424 36566706 -112950331 + B4A SINE B4 3 290 -2 9 863 279 0 0 0 chr6 36566726 36566757 -112950280 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 863 2630 173 23 74 chr6 36566757 36567313 -112949724 + RLTR12B LTR ERVK 1 528 0 9 863 287 250 0 14 chr6 36567440 36567509 -112949528 + (CA)n Simple_repeat Simple_repeat 1 68 0 9 863 3838 208 130 45 chr6 36567571 36568654 -112948383 - MTD-int LTR MaLR -83 1175 1 9 863 1243 226 144 11 chr6 36568654 36569021 -112948016 - MTD LTR MaLR 0 419 4 9 864 1026 102 18 0 chr6 36569169 36569336 -112947701 + (GAAA)n Simple_repeat Simple_repeat 2 171 0 9 864 8151 49 1 1 chr6 36569428 36571085 -112945952 - L1Md_F2 LINE L1 -1 6581 4924 9 864 409 250 143 44 chr6 36571136 36571408 -112945629 + L1MC5 LINE L1 7616 7914 -47 9 864 23 0 0 0 chr6 36571418 36571441 -112945596 + AT_rich Low_complexity Low_complexity 1 23 0 9 864 1577 103 17 0 chr6 36571493 36571725 -112945312 - Lx3_Mus LINE L1 0 7009 6774 1 864 994 238 20 5 chr6 36571777 36571980 -112945057 + B3 SINE B2 9 214 -2 1 864 732 294 20 57 chr6 36572046 36572291 -112944746 + B4A SINE B4 2 237 -55 1 864 2201 254 93 67 chr6 36572304 36572366 -112944671 + Lx7 LINE L1 6535 6597 -1099 1 864 1968 161 91 57 chr6 36572366 36572609 -112944428 - MTC LTR MaLR 0 421 196 1 864 874 169 7 13 chr6 36572609 36572759 -112944278 - B1_Mur4 SINE Alu 0 150 2 1 864 1968 161 91 57 chr6 36572759 36572922 -112944115 - MTC LTR MaLR -226 195 1 1 864 2201 254 93 67 chr6 36572922 36573678 -112943359 + Lx7 LINE L1 6598 7374 -322 1 864 18381 76 28 18 chr6 36573717 36577029 -112940008 - L1VL4 LINE L1 -26 3533 188 1 864 339 85 0 0 chr6 36577341 36577388 -112939649 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1 864 337 329 27 0 chr6 36578474 36578623 -112938414 - L1ME1 LINE L1 -12 6167 6015 1 864 207 0 0 0 chr6 36578697 36578720 -112938317 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 864 341 279 51 47 chr6 36578801 36579015 -112938022 - L1ME1 LINE L1 -356 5823 5609 1 864 24 77 0 0 chr6 36579047 36579099 -112937938 + AT_rich Low_complexity Low_complexity 1 52 0 1 864 719 324 77 10 chr6 36579099 36579749 -112937288 - L1ME1 LINE L1 -1070 5076 4363 1 864 28 0 0 0 chr6 36580100 36580128 -112936909 + AT_rich Low_complexity Low_complexity 1 28 0 1 864 547 319 7 0 chr6 36580267 36580411 -112936626 - ID_B1 SINE B4 0 224 80 1 864 276 30 0 0 chr6 36580541 36580574 -112936463 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1 864 1181 48 7 0 chr6 36580607 36580752 -112936285 + B1_Mm SINE Alu 2 147 0 1 864 741 222 0 0 chr6 36580752 36580923 -112936114 + A-rich Low_complexity Low_complexity 1 171 0 1 864 414 0 0 0 chr6 36581207 36581253 -112935784 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 864 424 332 108 5 chr6 36581277 36581683 -112935354 + L1M4 LINE L1 3498 3945 -2201 1 864 2489 33 3 3 chr6 36581701 36582009 -112935028 - L1_Mus1 LINE L1 -2 6565 6258 1 864 234 253 13 51 chr6 36582218 36582297 -112934740 - L1ME1 LINE L1 -1986 4160 4085 1 864 36 87 0 0 chr6 36582534 36582626 -112934411 + AT_rich Low_complexity Low_complexity 1 92 0 1 864 5450 185 60 23 chr6 36582649 36583789 -112933248 - Lx5 LINE L1 -6 7044 5863 1 864 3755 168 22 33 chr6 36583804 36583873 -112933164 - L1_Mur2 LINE L1 -302 5575 5510 1 864 2746 39 0 3 chr6 36583873 36584204 -112932833 + IAPEY3_LTR LTR ERVK 1 330 -2 1 864 3755 168 22 33 chr6 36584204 36584891 -112932146 - L1_Mur2 LINE L1 -368 5509 4827 1 864 3627 160 120 20 chr6 36584887 36585654 -112931383 - L1_Mur2 LINE L1 -1831 4046 3203 1 864 377 183 15 5 chr6 36585650 36585764 -112931273 - L1_Mur1 LINE L1 -3015 2871 2655 1 864 431 169 0 0 chr6 36585759 36585842 -112931195 + L1_Mur1 LINE L1 3002 3084 -2802 1 864 4676 177 99 15 chr6 36585853 36586120 -112930917 - L1_Mur2 LINE L1 -3513 2364 2092 1 864 297 0 0 0 chr6 36586120 36586153 -112930884 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 864 4676 181 138 11 chr6 36586153 36587211 -112929826 - L1_Mur2 LINE L1 -3786 2091 883 1 864 1896 48 0 0 chr6 36587924 36588155 -112928882 - L1_Mus1 LINE L1 -1 6566 6336 1 864 561 198 0 0 chr6 36588309 36588425 -112928612 + CT-rich Low_complexity Low_complexity 1 116 0 1 864 479 281 58 0 chr6 36588425 36588564 -112928473 - B1F2 SINE Alu -1 148 2 1 864 32 57 0 0 chr6 36589167 36589220 -112927817 + AT_rich Low_complexity Low_complexity 1 53 0 1 864 390 150 0 0 chr6 36589713 36589773 -112927264 + RSINE1 SINE B4 8 67 -98 1 864 25 31 0 0 chr6 36590312 36590344 -112926693 + AT_rich Low_complexity Low_complexity 1 32 0 1 864 846 278 40 9 chr6 36590364 36590687 -112926350 - Lx9 LINE L1 -28 7616 7284 1 864 528 290 29 59 chr6 36590690 36590928 -112926109 + Lx9 LINE L1 6963 7193 -451 1 864 1603 266 40 12 chr6 36590987 36591387 -112925650 - Lx6 LINE L1 -51 7409 6999 1 864 341 322 141 65 chr6 36591440 36591852 -112925185 - L1MEd LINE L1 -5035 1084 642 1 864 441 54 0 0 chr6 36592098 36592154 -112924883 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 864 378 0 0 0 chr6 36593195 36593237 -112923800 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 864 373 101 25 25 chr6 36593243 36593324 -112923713 + (CAGAGA)n Simple_repeat Simple_repeat 2 82 0 1 864 387 0 0 0 chr6 36595866 36595909 -112921128 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 864 24 53 0 0 chr6 36595948 36595986 -112921051 + AT_rich Low_complexity Low_complexity 1 38 0 1 864 808 311 75 32 chr6 36596095 36596374 -112920663 + B4A SINE B4 2 292 0 1 864 346 16 79 0 chr6 36596395 36596458 -112920579 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 864 22 35 0 0 chr6 36596958 36596987 -112920050 + AT_rich Low_complexity Low_complexity 1 29 0 1 864 202 375 27 0 chr6 36597232 36597344 -112919693 + MIRb SINE MIR 89 203 -65 1 864 1058 292 62 14 chr6 36597501 36597984 -112919053 + L1MA6 LINE L1 5689 6194 -106 1 864 572 253 32 16 chr6 36598021 36598206 -112918831 + L1_Rod LINE L1 1730 1917 -3930 1 864 1866 155 88 6 chr6 36598229 36598572 -112918465 + ORR1C2 LTR MaLR 5 375 -9 1 864 1806 148 31 36 chr6 36598623 36598981 -112918056 - RLTR15 LTR ERVK -3 356 1 1 864 180 0 0 0 chr6 36598982 36599002 -112918035 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 864 234 241 0 18 chr6 36599016 36599071 -112917966 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 864 487 340 5 5 chr6 36599081 36599294 -112917743 + L1_Mur3 LINE L1 2422 2634 -3246 1 864 4144 29 16 0 chr6 36599477 36599965 -112917072 + L1Md_F2 LINE L1 6086 6581 -1 1 864 295 340 7 53 chr6 36600048 36600200 -112916837 + Lx8 LINE L1 6972 7116 -357 1 864 691 224 94 45 chr6 36600434 36600635 -112916402 + B3 SINE B2 5 215 -1 1 864 24 0 0 0 chr6 36600670 36600694 -112916343 + AT_rich Low_complexity Low_complexity 1 24 0 1 864 461 284 56 43 chr6 36600848 36601150 -112915887 - L1MC5 LINE L1 -721 7240 6935 1 864 269 267 40 0 chr6 36601215 36601316 -112915721 - MER20B DNA MER1_type -166 617 513 1 864 27 29 0 0 chr6 36601361 36601395 -112915642 + AT_rich Low_complexity Low_complexity 1 34 0 1 864 4996 167 69 8 chr6 36601700 36602594 -112914443 - Lx4A LINE L1 -52 7006 6058 1 864 450 0 0 0 chr6 36602680 36602730 -112914307 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 864 844 264 14 9 chr6 36602996 36603210 -112913827 - B3 SINE B2 0 216 2 1 864 3734 109 30 21 chr6 36603233 36603807 -112913230 - Lx LINE L1 0 6654 6076 1 864 275 286 100 45 chr6 36604271 36604381 -112912656 - MLT1I LTR MaLR -198 213 98 1 864 779 89 7 0 chr6 36605162 36605297 -112911740 + (TC)n Simple_repeat Simple_repeat 1 136 0 1 864 234 0 0 0 chr6 36605297 36605322 -112911715 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 864 261 312 36 18 chr6 36605951 36606062 -112910975 + MamRep605 Unknown Unknown 386 498 -378 1 864 356 280 75 30 chr6 36606332 36606462 -112910575 - B1F SINE Alu -5 144 1 1 864 4040 92 2 22 chr6 36606578 36607158 -112909879 - L1_Mus3 LINE L1 -7 6631 6064 1 864 3754 68 2 4 chr6 36607158 36607673 -112909364 + L1_Mus3 LINE L1 5557 6067 -571 1 864 598 210 21 35 chr6 36607826 36607961 -112909076 + B1_Mus1 SINE Alu 1 136 -12 1 864 315 0 0 0 chr6 36607961 36607996 -112909041 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 864 259 240 90 0 chr6 36608377 36608477 -112908560 + Lx9 LINE L1 7479 7587 -57 1 864 1452 190 81 21 chr6 36608502 36608835 -112908202 - Lx9 LINE L1 -194 7450 7098 1 864 902 228 16 21 chr6 36608841 36609083 -112907954 + Lx9 LINE L1 6849 7089 -555 1 864 1034 192 108 0 chr6 36609496 36609699 -112907338 - URR1A DNA MER1_type 0 226 2 1 864 617 58 0 11 chr6 36610413 36610500 -112906537 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 864 360 294 79 123 chr6 36611347 36611688 -112905349 - LTR37B LTR ERV1 -140 328 3 1 864 180 125 0 0 chr6 36612421 36612453 -112904584 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 1 864 302 339 129 33 chr6 36612496 36612737 -112904300 + L1MEf LINE L1 1060 1323 -5764 1 864 5247 191 99 70 chr6 36612739 36613294 -112903743 - RMER12 LTR ERVK 0 1322 795 1 864 389 53 0 18 chr6 36613294 36613351 -112903686 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 864 5247 191 99 70 chr6 36613351 36613397 -112903640 - RMER12 LTR ERVK -528 794 759 1 864 273 57 0 0 chr6 36613397 36613432 -112903605 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 1 864 5247 191 99 70 chr6 36613432 36614114 -112902923 - RMER12 LTR ERVK -564 758 1 1 864 264 217 25 8 chr6 36614213 36614318 -112902719 + L1MEf LINE L1 2278 2444 -4643 1 864 324 269 39 45 chr6 36614642 36614798 -112902239 + L1MEf LINE L1 2834 2988 -4114 1 864 235 292 0 68 chr6 36614845 36614948 -112902089 + L1MEf LINE L1 3425 3520 -3486 1 864 252 0 0 0 chr6 36615179 36615207 -112901830 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 1 864 529 331 135 23 chr6 36615328 36615714 -112901323 + L1MEf LINE L1 3693 4121 -2885 1 864 340 331 30 8 chr6 36616088 36616219 -112900818 - MLT1B LTR MaLR -38 352 219 1 864 411 321 65 36 chr6 36616362 36616501 -112900536 + RSINE1 SINE B4 1 143 -22 1 864 360 0 0 0 chr6 36616507 36616547 -112900490 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 864 208 295 0 21 chr6 36616578 36616591 -112900446 + (CATA)n Simple_repeat Simple_repeat 2 14 0 1 864 661 284 77 18 chr6 36616591 36616864 -112900173 + B4A SINE B4 2 290 -2 1 864 208 295 0 21 chr6 36616864 36616947 -112900090 + (CATA)n Simple_repeat Simple_repeat 3 84 0 1 864 263 390 22 0 chr6 36617282 36617418 -112899619 + Lx8 LINE L1 6930 7068 -405 1 864 618 279 52 38 chr6 36617430 36617642 -112899395 + Lx8 LINE L1 7115 7329 -144 1 864 44 0 0 0 chr6 36617646 36617690 -112899347 + AT_rich Low_complexity Low_complexity 1 44 0 1 864 578 47 24 0 chr6 36617704 36617789 -112899248 + (TAGA)n Simple_repeat Simple_repeat 1 87 0 1 864 267 288 8 25 chr6 36617789 36617910 -112899127 + Lx8 LINE L1 7354 7472 -1 1 864 1728 136 99 0 chr6 36617931 36618263 -112898774 - L1_Mur2 LINE L1 -523 5354 4990 1 864 180 0 0 0 chr6 36618284 36618304 -112898733 + (A)n Simple_repeat Simple_repeat 1 20 0 1 864 2758 170 11 38 chr6 36618304 36619250 -112897787 + Lx2B LINE L1 5387 6241 -397 1 864 2160 134 98 93 chr6 36620800 36621219 -112895818 - MTC LTR MaLR 0 421 1 1 864 345 220 69 92 chr6 36621448 36621578 -112895459 - RSINE1 SINE B4 -3 162 36 1 864 3615 58 114 2 chr6 36621636 36622135 -112894902 + LTRIS2 LTR ERV1 10 564 0 1 864 271 373 77 12 chr6 36622948 36623116 -112893921 - MIRc SINE MIR -27 241 63 1 864 384 357 64 50 chr6 36623973 36624253 -112892784 - MLT1E1A LTR MaLR -189 465 182 1 864 1089 73 0 0 chr6 36625215 36625352 -112891685 + B1_Mus1 SINE Alu 1 137 -11 1 864 204 67 0 0 chr6 36625352 36625382 -112891655 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 864 369 0 0 0 chr6 36627033 36627074 -112889963 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 864 270 0 0 0 chr6 36627074 36627103 -112889934 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 864 366 23 0 0 chr6 36627766 36627809 -112889228 + (TTG)n Simple_repeat Simple_repeat 1 43 0 2 864 372 43 0 0 chr6 36628553 36628599 -112888438 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 864 258 312 25 67 chr6 36629031 36629151 -112887886 + MER94 DNA AcHobo 20 134 0 2 864 573 15 0 0 chr6 36629669 36629735 -112887302 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 2 864 28 61 0 0 chr6 36630111 36630160 -112886877 + AT_rich Low_complexity Low_complexity 1 49 0 2 864 24 53 0 0 chr6 36630508 36630546 -112886491 + AT_rich Low_complexity Low_complexity 1 38 0 2 864 2961 115 0 18 chr6 36630598 36631042 -112885995 - Lx2 LINE L1 -4 6993 6558 2 864 877 235 0 114 chr6 36631328 36631530 -112885507 - B3 SINE B2 -37 179 1 2 864 23 33 0 0 chr6 36632490 36632520 -112884517 + AT_rich Low_complexity Low_complexity 1 30 0 2 864 6081 100 36 8 chr6 36632520 36633441 -112883596 - Lx3A LINE L1 -6 6975 6029 2 864 1181 227 19 11 chr6 36633441 36633708 -112883329 - Lx6 LINE L1 -109 7351 7083 2 864 395 327 67 0 chr6 36633767 36633932 -112883105 + MIR SINE MIR 66 241 -21 2 864 195 129 0 0 chr6 36634031 36634062 -112882975 + (T)n Simple_repeat Simple_repeat 1 31 0 2 864 292 266 25 76 chr6 36635064 36635182 -112881855 - MLT1A1 LTR MaLR -14 394 283 2 864 1058 284 71 25 chr6 36635567 36636116 -112880921 - L1_Rod LINE L1 0 5847 5274 2 864 3321 187 57 27 chr6 36636220 36637073 -112879964 + MYSERV-int LTR ERVK 5670 6548 -2 2 864 1721 216 119 23 chr6 36637075 36637189 -112879848 + RLTR11A2 LTR ERVK 1 122 -405 2 864 197 33 33 0 chr6 36637189 36637219 -112879818 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 864 1043 72 43 7 chr6 36637223 36637363 -112879674 + B1_Mus2 SINE Alu 2 146 -1 2 864 1721 216 119 23 chr6 36637363 36637721 -112879316 + RLTR11A2 LTR ERVK 123 524 -3 2 864 331 162 0 0 chr6 36637767 36637847 -112879190 + Lx9 LINE L1 7564 7643 -1 2 864 226 310 69 10 chr6 36637869 36637970 -112879067 + PB1D10 SINE Alu 5 111 -6 2 864 31 26 0 0 chr6 36638061 36638099 -112878938 + AT_rich Low_complexity Low_complexity 1 38 0 2 864 635 199 113 41 chr6 36638213 36638407 -112878630 - Lx7 LINE L1 0 7696 7489 2 864 405 0 0 0 chr6 36638408 36638453 -112878584 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 864 2781 219 17 18 chr6 36638488 36639148 -112877889 - Lx7 LINE L1 -354 7342 6684 2 864 458 33 0 16 chr6 36639516 36639577 -112877460 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 864 21 57 0 0 chr6 36639676 36639711 -112877326 + AT_rich Low_complexity Low_complexity 1 35 0 2 864 444 104 0 0 chr6 36639736 36639803 -112877234 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 864 483 332 107 14 chr6 36640318 36640608 -112876429 - L3 LINE CR1 -646 3843 3527 2 864 615 75 0 0 chr6 36641874 36641968 -112875069 + (TC)n Simple_repeat Simple_repeat 1 94 0 2 864 7607 49 4 1 chr6 36642662 36643639 -112873398 - L1_Mus1 LINE L1 0 6567 5588 2 864 2092 89 13 0 chr6 36643659 36643963 -112873074 - L1_Mm LINE L1 -824 5059 4752 2 864 319 337 22 0 chr6 36644764 36644856 -112872181 - B3A SINE B2 -11 187 94 2 864 391 136 9 143 chr6 36644905 36645017 -112872020 - B1_Mur3 SINE Alu -51 98 2 2 864 288 292 125 0 chr6 36645031 36645127 -112871910 + L2a LINE L2 3286 3393 -33 2 864 303 301 9 0 chr6 36645484 36645597 -112871440 + ERVL-E-int LTR ERVL 1541 1654 -4013 2 864 434 279 0 0 chr6 36645772 36645876 -112871161 + MLT1A LTR MaLR 261 364 -10 2 864 242 357 63 14 chr6 36646889 36647031 -112870006 - MamRep605 Unknown Unknown -210 666 518 2 864 683 287 139 61 chr6 36647188 36647533 -112869504 - MTEb LTR MaLR -7 372 1 2 864 47 61 0 0 chr6 36647706 36647788 -112869249 + AT_rich Low_complexity Low_complexity 1 82 0 2 864 310 142 80 0 chr6 36647807 36647920 -112869117 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 2 864 497 259 35 6 chr6 36649389 36649560 -112867477 - MER53 DNA hAT -9 184 9 2 864 489 303 144 39 chr6 36650275 36650636 -112866401 + Charlie4a DNA MER1_type 103 501 -7 2 864 30 59 0 0 chr6 36651950 36652001 -112865036 + AT_rich Low_complexity Low_complexity 1 51 0 2 864 180 0 0 0 chr6 36652350 36652370 -112864667 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 864 510 17 0 0 chr6 36653189 36653248 -112863789 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 864 243 0 0 0 chr6 36653324 36653351 -112863686 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 864 206 424 10 0 chr6 36653813 36653912 -112863125 + L2a LINE L2 3294 3393 -33 2 864 846 0 0 0 chr6 36654846 36654940 -112862097 + (TTC)n Simple_repeat Simple_repeat 3 96 0 2 864 953 173 42 28 chr6 36654957 36655171 -112861866 - Lx4A LINE L1 -3 7055 6839 2 864 39093 11 1 6 chr6 36655175 36661560 -112855477 - L1Md_A LINE L1 0 6582 232 2 864 450 0 0 0 chr6 36661723 36661773 -112855264 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2 864 270 0 0 0 chr6 36662199 36662229 -112854808 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 864 218 179 18 0 chr6 36662605 36662661 -112854376 + GA-rich Low_complexity Low_complexity 2 58 0 2 864 405 0 0 0 chr6 36663906 36663951 -112853086 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 864 221 180 0 20 chr6 36665360 36665411 -112851626 + A-rich Low_complexity Low_complexity 2 51 0 2 864 261 0 0 0 chr6 36665515 36665544 -112851493 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 864 1010 221 25 0 chr6 36668195 36668399 -112848638 + B3 SINE B2 8 216 0 2 864 1872 193 32 53 chr6 36669019 36669396 -112847641 + ORR1C1 LTR MaLR 1 369 -9 2 864 937 123 14 0 chr6 36671138 36671276 -112845761 + B2_Mm2 SINE B2 2 141 -54 2 864 342 0 0 0 chr6 36671280 36671318 -112845719 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 864 1118 272 84 0 chr6 36671353 36671735 -112845302 + Lx6 LINE L1 7019 7432 -28 2 864 25 0 0 0 chr6 36671736 36671761 -112845276 + AT_rich Low_complexity Low_complexity 1 25 0 2 864 464 302 28 28 chr6 36671940 36672117 -112844920 + MLT1B LTR MaLR 210 386 -4 2 864 590 335 53 21 chr6 36672259 36672540 -112844497 + B4A SINE B4 1 290 -2 2 864 183 42 0 0 chr6 36673701 36673725 -112843312 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 864 272 327 71 0 chr6 36673868 36673981 -112843056 + MIRb SINE MIR 133 253 -15 2 864 438 269 41 25 chr6 36674986 36675108 -112841929 + B1F SINE Alu 1 124 -25 2 864 192 40 0 0 chr6 36675118 36675143 -112841894 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 864 22 0 0 0 chr6 36675763 36675785 -112841252 + AT_rich Low_complexity Low_complexity 1 22 0 2 864 1588 119 90 0 chr6 36676620 36676888 -112840149 - Lx2 LINE L1 0 6997 6706 2 864 258 333 53 53 chr6 36677206 36677320 -112839717 + LTR33B LTR ERVL 19 132 -371 2 864 25476 221 8 19 chr6 36677325 36678417 -112838620 + MMERGLN-int LTR ERV1 140 1198 -6358 2 864 3492 25 0 0 chr6 36678417 36678812 -112838225 + MTA_Mm LTR MaLR 2 396 0 2 864 25476 221 8 19 chr6 36678812 36683287 -112833750 + MMERGLN-int LTR ERV1 1199 5648 -1908 2 864 4646 259 9 9 chr6 36683887 36684697 -112832340 + MMERGLN-int LTR ERV1 6390 7195 -361 2 864 5076 37 2 0 chr6 36684697 36685297 -112831740 - L1Md_F2 LINE L1 0 6582 5982 2 864 4646 259 9 9 chr6 36685297 36685653 -112831384 + MMERGLN-int LTR ERV1 7196 7556 0 2 864 3057 124 21 64 chr6 36685653 36686188 -112830849 + RLTR1B LTR ERV1 1 512 0 2 864 406 265 79 33 chr6 36686440 36686592 -112830445 + MLT1N2 LTR MaLR 404 562 0 2 864 242 310 80 57 chr6 36687784 36687999 -112829038 + MIRc SINE MIR 2 206 -62 2 864 315 0 0 0 chr6 36688884 36688919 -112828118 + (A)n Simple_repeat Simple_repeat 1 35 0 2 864 234 0 0 0 chr6 36689430 36689456 -112827581 + (T)n Simple_repeat Simple_repeat 1 26 0 2 864 1349 259 45 14 chr6 36690311 36690667 -112826370 - MLT1B LTR MaLR -14 376 10 2 864 180 0 0 0 chr6 36690803 36690823 -112826214 + (TC)n Simple_repeat Simple_repeat 2 21 0 2 864 426 85 0 0 chr6 36690823 36690881 -112826156 + (TATG)n Simple_repeat Simple_repeat 2 60 0 2 864 348 205 35 35 chr6 36691541 36691627 -112825410 - L1MD2 LINE L1 -43 6316 6231 2 864 443 297 119 0 chr6 36691867 36692026 -112825011 - B3A SINE B2 -38 178 2 2 864 453 300 34 53 chr6 36692026 36692290 -112824747 - L1MD2 LINE L1 -465 5894 5636 2 864 1011 141 126 22 chr6 36692425 36692607 -112824430 - URR1B DNA MER1_type -24 201 1 2 864 198 0 0 0 chr6 36693049 36693071 -112823966 + (A)n Simple_repeat Simple_repeat 1 22 0 2 864 290 298 0 103 chr6 36693071 36693187 -112823850 + MER20 DNA MER1_type 112 215 -4 2 864 24 0 0 0 chr6 36693210 36693234 -112823803 + AT_rich Low_complexity Low_complexity 1 24 0 2 864 260 301 64 29 chr6 36693787 36693927 -112823110 + ORR1D2 LTR MaLR 183 327 -43 2 864 261 0 0 0 chr6 36695465 36695494 -112821543 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 864 2116 116 64 26 chr6 36695759 36695890 -112821147 - Lx2A LINE L1 -4 7004 6861 2 864 333 0 0 0 chr6 36695890 36695927 -112821110 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 864 2116 116 64 26 chr6 36695927 36696140 -112820897 - Lx2A LINE L1 -148 6860 6647 2 864 385 316 84 40 chr6 36697733 36698007 -112819030 + ORR1E LTR MaLR 74 379 0 2 864 25 0 0 0 chr6 36698666 36698691 -112818346 + AT_rich Low_complexity Low_complexity 1 25 0 2 864 1129 156 102 5 chr6 36699840 36700046 -112816991 - URR1A DNA MER1_type 0 226 1 2 13 1813 266 62 25 chr6 36700059 36700588 -112816449 + RMER15 LTR ERVL 27 575 0 2 865 333 155 0 0 chr6 36701283 36701341 -112815696 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 865 31 0 0 0 chr6 36701564 36701595 -112815442 + AT_rich Low_complexity Low_complexity 1 31 0 2 865 1067 346 72 21 chr6 36703428 36703817 -112813220 + MER70B LTR ERVL 13 421 -157 2 865 492 72 0 0 chr6 36704097 36704166 -112812871 + (TATG)n Simple_repeat Simple_repeat 4 72 0 2 865 241 316 0 112 chr6 36704173 36704280 -112812757 - RSINE1 SINE B4 0 165 71 2 865 23 0 0 0 chr6 36706135 36706158 -112810879 + AT_rich Low_complexity Low_complexity 1 23 0 3 865 196 286 48 0 chr6 36706525 36706588 -112810449 - L3 LINE CR1 -159 4330 4265 3 865 293 328 178 47 chr6 36710083 36710321 -112806716 + MLT1E3 LTR MaLR 58 334 -290 3 865 252 0 0 0 chr6 36710321 36710349 -112806688 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 865 297 0 0 0 chr6 36710349 36710381 -112806656 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 865 293 328 178 47 chr6 36710381 36710461 -112806576 + MLT1E3 LTR MaLR 335 418 -206 3 865 243 235 22 63 chr6 36710757 36710885 -112806152 + MTEb LTR MaLR 244 364 -15 3 865 412 322 8 0 chr6 36710935 36711056 -112805981 + MLT1E3 LTR MaLR 495 616 -8 3 865 450 0 0 0 chr6 36711459 36711509 -112805528 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 865 36 40 0 0 chr6 36711951 36712001 -112805036 + AT_rich Low_complexity Low_complexity 1 50 0 3 865 648 257 100 16 chr6 36712001 36712191 -112804846 - B3 SINE B2 -9 207 2 3 865 239 286 130 0 chr6 36713443 36713520 -112803517 - MLT1E3 LTR MaLR -534 90 4 3 865 202 229 0 0 chr6 36713697 36713745 -112803292 + A-rich Low_complexity Low_complexity 5 52 0 3 865 864 272 90 3 chr6 36715737 36716025 -112801012 - L1MC1 LINE L1 -17 6316 6004 3 865 1274 167 9 0 chr6 36716586 36716808 -112800229 + URR1B DNA MER1_type 1 224 -1 3 865 330 194 0 0 chr6 36717557 36717624 -112799413 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 865 287 329 12 0 chr6 36717696 36717778 -112799259 + MER33 DNA MER1_type 4 86 -238 3 865 23 78 0 0 chr6 36717972 36718023 -112799014 + AT_rich Low_complexity Low_complexity 1 51 0 3 865 621 0 0 0 chr6 36718415 36718484 -112798553 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 865 1150 61 70 35 chr6 36718795 36718966 -112798071 + B2_Mm2 SINE B2 1 177 -18 3 865 450 341 21 22 chr6 36719782 36719958 -112797079 - LTR33 LTR ERVL -352 179 10 3 865 628 159 126 22 chr6 36720211 36720346 -112796691 + B1_Mur4 SINE Alu 1 149 -1 3 865 627 190 25 12 chr6 36720385 36720545 -112796492 + GA-rich Low_complexity Low_complexity 4 165 0 3 865 233 163 20 0 chr6 36723560 36723609 -112793428 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 865 273 345 0 0 chr6 36723702 36723786 -112793251 - ID_B1 SINE B4 -7 217 134 3 865 226 342 23 109 chr6 36723786 36723823 -112793214 - PB1D10 SINE Alu 0 101 1 3 865 240 100 0 0 chr6 36724925 36724965 -112792072 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 865 32 0 0 0 chr6 36726440 36726472 -112790565 + AT_rich Low_complexity Low_complexity 1 32 0 3 865 222 250 0 0 chr6 36730146 36730194 -112786843 + A-rich Low_complexity Low_complexity 1 48 0 3 865 1151 275 16 41 chr6 36730728 36731043 -112785994 + Lx8 LINE L1 6508 6814 -659 3 865 878 281 125 21 chr6 36732122 36732402 -112784635 + MTE2b LTR MaLR 1 309 -70 3 865 194 128 26 0 chr6 36734447 36734486 -112782551 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 865 781 267 94 38 chr6 36734521 36734786 -112782251 - B4A SINE B4 -12 280 1 3 865 186 43 0 0 chr6 36736708 36736731 -112780306 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 865 414 0 0 0 chr6 36737424 36737470 -112779567 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 865 459 0 0 0 chr6 36737470 36737520 -112779517 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 865 511 248 14 7 chr6 36740371 36740509 -112776528 - Tigger6a DNA MER2_type -14 1069 931 3 865 1176 335 64 28 chr6 36740560 36741166 -112775871 - Tigger6a DNA MER2_type -269 814 187 3 865 1222 68 7 0 chr6 36741983 36742130 -112774907 + B1_Mus1 SINE Alu 1 148 0 3 865 659 124 9 0 chr6 36742139 36742252 -112774785 + (GAAA)n Simple_repeat Simple_repeat 2 115 0 3 865 186 43 0 0 chr6 36742260 36742283 -112774754 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 865 617 96 11 0 chr6 36742283 36742377 -112774660 + (TA)n Simple_repeat Simple_repeat 2 96 0 3 865 609 120 68 0 chr6 36742425 36742542 -112774495 + Lx9 LINE L1 7513 7637 -7 3 865 491 0 17 0 chr6 36742641 36742700 -112774337 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 3 865 809 203 0 63 chr6 36742745 36742903 -112774134 - B1_Mur2 SINE Alu -1 148 1 3 865 424 289 36 72 chr6 36742930 36743068 -112773969 + RSINE1 SINE B4 2 134 -31 3 865 468 62 0 0 chr6 36745265 36745329 -112771708 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 865 732 304 86 57 chr6 36745775 36746124 -112770913 - ORR1E LTR MaLR 0 359 1 3 865 275 295 71 14 chr6 36746596 36746737 -112770300 + L1MA6 LINE L1 6065 6213 -87 3 865 587 167 9 0 chr6 36746770 36746884 -112770153 + (CATA)n Simple_repeat Simple_repeat 2 116 0 3 865 216 360 63 21 chr6 36747943 36748085 -112768952 + MIRb SINE MIR 120 267 -1 3 865 420 37 0 0 chr6 36748109 36748163 -112768874 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 3 865 224 91 23 0 chr6 36749300 36749344 -112767693 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 3 865 814 126 14 7 chr6 36751772 36751916 -112765121 + (TTCC)n Simple_repeat Simple_repeat 3 147 0 3 865 21 36 0 0 chr6 36754934 36754962 -112762075 + AT_rich Low_complexity Low_complexity 1 28 0 3 865 294 206 0 0 chr6 36755417 36755485 -112761552 + GA-rich Low_complexity Low_complexity 2 69 0 3 865 332 289 50 20 chr6 36755515 36755614 -112761423 + PB1D7 SINE Alu 19 120 0 3 865 823 180 0 0 chr6 36757522 36757661 -112759376 + B1_Mur4 SINE Alu 6 144 -6 3 865 641 193 7 0 chr6 36757669 36757819 -112759218 + GA-rich Low_complexity Low_complexity 2 152 0 3 865 21 36 0 0 chr6 36757890 36757918 -112759119 + AT_rich Low_complexity Low_complexity 1 28 0 3 865 527 0 16 0 chr6 36758684 36758747 -112758290 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 865 378 61 0 0 chr6 36758986 36759035 -112758002 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 865 522 0 0 0 chr6 36760501 36760559 -112756478 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 865 523 254 56 63 chr6 36761798 36761941 -112755096 + MER20 DNA MER1_type 3 144 -75 3 865 672 307 11 53 chr6 36761952 36762141 -112754896 + B4A SINE B4 13 193 -99 3 865 232 309 168 22 chr6 36762796 36762981 -112754056 - L2 LINE L2 -481 2938 2727 3 865 447 52 0 0 chr6 36763744 36763802 -112753235 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 865 811 333 4 25 chr6 36763866 36764146 -112752891 - B4A SINE B4 -18 274 1 3 865 394 252 61 63 chr6 36764297 36764482 -112752555 - MTEa LTR MaLR -9 370 178 3 865 612 235 43 22 chr6 36764679 36764818 -112752219 + B3 SINE B2 75 216 0 3 865 1249 62 0 0 chr6 36764970 36765116 -112751921 + B1_Mus2 SINE Alu 2 147 0 3 865 367 184 11 11 chr6 36765116 36765204 -112751833 + GA-rich Low_complexity Low_complexity 2 89 0 3 865 707 270 179 48 chr6 36765204 36765944 -112751093 + L1ME1 LINE L1 5300 6165 -14 3 865 180 0 0 0 chr6 36765952 36765972 -112751065 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 865 699 236 145 23 chr6 36766444 36766776 -112750261 - MTD LTR MaLR -5 414 18 3 865 1101 191 51 14 chr6 36767761 36767978 -112749059 + URR1B DNA MER1_type 1 225 0 3 865 188 242 59 29 chr6 36768046 36768114 -112748923 - MIR SINE MIR -60 202 133 3 865 1462 228 33 44 chr6 36771187 36771577 -112745460 - MTD LTR MaLR 0 419 34 3 865 594 0 0 0 chr6 36771755 36771821 -112745216 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 3 865 32640 86 11 2 chr6 36771853 36774431 -112742606 - L1_Mus1 LINE L1 0 6567 3964 3 865 2378 117 168 31 chr6 36774431 36774855 -112742182 - RLTR45 LTR ERVK 0 482 1 3 865 32640 116 15 16 chr6 36774855 36778450 -112738587 - L1_Mus1 LINE L1 -1920 3963 379 3 865 1710 190 104 9 chr6 36778636 36778981 -112738056 + ORR1C1 LTR MaLR 1 378 0 3 865 183 42 0 0 chr6 36779090 36779114 -112737923 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 865 595 36 223 3 chr6 36779366 36779463 -112737574 - B1_Mm SINE Alu -39 108 1 3 865 470 280 55 77 chr6 36779463 36779645 -112737392 + B3 SINE B2 33 210 -6 3 865 338 22 43 0 chr6 36779892 36779938 -112737099 + (CAGA)n Simple_repeat Simple_repeat 4 51 0 3 865 245 189 19 0 chr6 36779968 36780021 -112737016 + GA-rich Low_complexity Low_complexity 6 59 0 3 865 235 296 91 0 chr6 36780721 36780809 -112736228 + ID_B1 SINE B4 80 175 -49 3 865 319 281 24 0 chr6 36780744 36780826 -112736211 + PB1D10 SINE Alu 28 111 -6 3 865 717 243 239 3 chr6 36781619 36781911 -112735126 + MTE2a LTR MaLR 19 379 0 3 865 350 284 64 0 chr6 36781941 36782050 -112734987 + RMER15 LTR ERVL 443 558 -17 3 865 3327 276 100 32 chr6 36783371 36783477 -112733560 - Lx8 LINE L1 -2 7471 7365 3 865 306 0 0 0 chr6 36783477 36783511 -112733526 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 865 3327 276 100 32 chr6 36783511 36784551 -112732486 - Lx8 LINE L1 -109 7364 6248 3 865 263 321 27 27 chr6 36784825 36784937 -112732100 - MIRb SINE MIR -109 159 48 3 865 21 0 0 0 chr6 36785200 36785221 -112731816 + AT_rich Low_complexity Low_complexity 1 21 0 3 865 381 22 0 0 chr6 36785807 36785853 -112731184 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 3 865 248 261 151 0 chr6 36786345 36786464 -112730573 + L1MEc LINE L1 787 923 -5477 3 865 492 295 128 21 chr6 36786600 36786787 -112730250 - B4A SINE B4 -85 207 1 3 865 385 308 176 10 chr6 36786928 36787223 -112729814 - L1MEc LINE L1 -6020 380 37 3 865 204 220 0 20 chr6 36787609 36787660 -112729377 + CT-rich Low_complexity Low_complexity 2 51 0 3 865 418 306 0 71 chr6 36788690 36788709 -112728328 + ID_B1 SINE B4 68 224 0 3 865 828 189 0 13 chr6 36788709 36788859 -112728178 + B1_Mur3 SINE Alu 2 149 0 3 865 182 241 0 100 chr6 36788911 36788971 -112728066 - MER5A DNA MER1_type -41 148 95 3 865 195 100 0 0 chr6 36789612 36789642 -112727395 + (CAGAGA)n Simple_repeat Simple_repeat 1 30 0 4 865 267 54 0 0 chr6 36789642 36789678 -112727359 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 865 360 0 0 0 chr6 36789678 36789717 -112727320 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 865 400 111 28 0 chr6 36790526 36790598 -112726439 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 865 189 349 33 14 chr6 36790951 36791047 -112725990 + MIR SINE MIR 79 185 -83 4 865 234 388 71 14 chr6 36791819 36792031 -112725006 - L3 LINE CR1 -72 4417 4194 4 865 216 0 0 0 chr6 36792249 36792273 -112724764 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 865 221 333 29 0 chr6 36793875 36793980 -112723057 + (TATG)n Simple_repeat Simple_repeat 1 108 0 4 865 324 0 0 0 chr6 36794962 36794998 -112722039 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 865 331 125 33 43 chr6 36799336 36799428 -112717609 + CT-rich Low_complexity Low_complexity 3 93 0 4 865 616 281 54 35 chr6 36800066 36800269 -112716768 + B3 SINE B2 1 207 -9 4 865 453 333 29 18 chr6 36802043 36802214 -112714823 - MER105 DNA DNA -30 174 2 4 865 562 279 44 75 chr6 36802801 36803075 -112713962 + B4 SINE B4 2 292 0 4 865 473 58 14 0 chr6 36803097 36803166 -112713871 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 865 234 0 0 0 chr6 36803318 36803344 -112713693 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 865 960 226 46 9 chr6 36805783 36806002 -112711035 + Lx4B LINE L1 6827 7053 -5 4 865 509 135 0 11 chr6 36806029 36806119 -112710918 + (TAGG)n Simple_repeat Simple_repeat 3 91 0 4 865 384 77 0 0 chr6 36806117 36806169 -112710868 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 865 1424 116 91 5 chr6 36806212 36806420 -112710617 + URR1A DNA MER1_type 1 226 0 4 865 278 180 10 0 chr6 36806788 36806888 -112710149 + (TA)n Simple_repeat Simple_repeat 2 102 0 4 865 243 0 0 0 chr6 36806891 36806918 -112710119 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 865 1515 246 42 6 chr6 36807021 36807376 -112709661 + ORR1D2 LTR MaLR 1 368 -2 4 865 180 77 0 0 chr6 36807421 36807447 -112709590 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 865 344 244 13 176 chr6 36807548 36807707 -112709330 - ORR1E LTR MaLR -226 133 1 4 865 270 0 0 0 chr6 36807710 36807740 -112709297 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 865 225 0 0 0 chr6 36808120 36808145 -112708892 + (A)n Simple_repeat Simple_repeat 1 25 0 4 865 411 213 113 45 chr6 36809176 36809309 -112707728 + RLTR14 LTR ERV1 228 369 -13 4 865 3458 14 0 0 chr6 36809450 36809821 -112707216 - L1Md_T LINE L1 0 6582 6212 4 865 605 274 37 0 chr6 36810036 36810171 -112706866 + B1_Mur1 SINE Alu 1 140 -9 4 865 194 330 107 29 chr6 36810633 36810736 -112706301 + MIRb SINE MIR 157 267 -1 4 865 315 0 0 0 chr6 36810937 36810972 -112706065 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 4 865 40 17 0 32 chr6 36811687 36811718 -112705319 + AT_rich Low_complexity Low_complexity 1 31 0 4 865 978 239 33 9 chr6 36811718 36811929 -112705108 + B3 SINE B2 1 216 0 4 865 40 17 0 32 chr6 36811929 36811959 -112705078 + AT_rich Low_complexity Low_complexity 1 29 0 4 865 702 256 0 0 chr6 36811981 36812118 -112704919 - B1_Mur1 SINE Alu -11 138 2 4 865 21 36 0 0 chr6 36812127 36812155 -112704882 + AT_rich Low_complexity Low_complexity 1 28 0 4 865 293 145 16 0 chr6 36813971 36814033 -112703004 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 4 865 239 255 30 50 chr6 36814617 36814716 -112702321 + GA-rich Low_complexity Low_complexity 1 97 0 4 865 273 29 0 0 chr6 36814755 36814789 -112702248 + (TACTG)n Simple_repeat Simple_repeat 5 38 0 4 865 303 383 44 26 chr6 36815025 36815253 -112701784 - MIR SINE MIR -6 256 25 4 865 294 338 66 7 chr6 36816027 36816164 -112700873 + MIRb SINE MIR 9 153 -115 4 865 581 338 45 9 chr6 36816805 36817029 -112700008 + B4 SINE B4 40 271 -21 4 865 297 0 0 0 chr6 36817033 36817066 -112699971 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 865 297 0 0 0 chr6 36817066 36817098 -112699939 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 865 21 36 0 0 chr6 36817521 36817549 -112699488 + AT_rich Low_complexity Low_complexity 1 28 0 4 865 303 122 0 0 chr6 36818010 36818059 -112698978 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 865 216 119 44 15 chr6 36818577 36818645 -112698392 + (CAAA)n Simple_repeat Simple_repeat 4 73 0 4 865 5501 72 0 13 chr6 36818721 36819412 -112697625 - L1Md_F2 LINE L1 0 6582 5901 4 865 361 43 0 0 chr6 36819413 36819459 -112697578 + L1Md_F2 LINE L1 5855 5900 -684 4 865 677 296 31 31 chr6 36820737 36820932 -112696105 - B3A SINE B2 0 198 4 4 865 278 271 89 35 chr6 36822316 36822472 -112694565 - MLT1G3 LTR MaLR -191 357 208 4 865 295 363 24 16 chr6 36822545 36822671 -112694366 - MLT1G3 LTR MaLR -466 129 3 4 865 245 331 56 7 chr6 36823107 36823250 -112693787 + MLT1F LTR MaLR 208 357 -191 4 865 198 0 0 0 chr6 36823294 36823316 -112693721 + (T)n Simple_repeat Simple_repeat 1 22 0 4 865 246 81 0 0 chr6 36823400 36823437 -112693600 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 865 1027 60 0 50 chr6 36824236 36824377 -112692660 - L1_Mus1 LINE L1 0 6567 6434 4 865 1351 156 57 0 chr6 36824454 36824666 -112692371 - URR1B DNA MER1_type 0 225 2 4 865 333 270 27 0 chr6 36825446 36825520 -112691517 + ID4_ SINE ID 1 76 -7 4 865 776 65 9 0 chr6 36825540 36825647 -112691390 + (GA)n Simple_repeat Simple_repeat 2 109 0 4 865 287 67 44 0 chr6 36826260 36826305 -112690732 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 4 865 21 0 0 0 chr6 36827073 36827094 -112689943 + AT_rich Low_complexity Low_complexity 1 21 0 4 865 59 46 0 0 chr6 36827261 36827348 -112689689 + AT_rich Low_complexity Low_complexity 1 87 0 4 865 203 61 30 0 chr6 36829790 36829823 -112687214 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 865 668 271 7 0 chr6 36829844 36829988 -112687049 + ID_B1 SINE B4 80 224 0 4 866 362 326 140 4 chr6 36832366 36832594 -112684443 + L1MD LINE L1 3629 3887 -2259 4 866 269 173 122 138 chr6 36833218 36833236 -112683801 - B2_Mm2 SINE B2 -12 183 167 4 866 539 53 13 0 chr6 36833236 36833311 -112683726 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 866 595 173 122 138 chr6 36833311 36833473 -112683564 - B3A SINE B2 -29 166 6 4 866 334 307 77 19 chr6 36833527 36833683 -112683354 + L1M5 LINE L1 4629 4793 -1353 4 866 759 282 5 14 chr6 36833689 36833898 -112683139 + B3 SINE B2 4 210 -6 4 866 1758 285 53 20 chr6 36833984 36834629 -112682408 + Lx9 LINE L1 6771 7436 -208 4 866 373 272 0 55 chr6 36834639 36834748 -112682289 - RMER12 LTR ERVK -453 869 767 4 866 237 273 0 0 chr6 36834748 36834803 -112682234 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 866 247 186 50 66 chr6 36834803 36834924 -112682113 + Lx9 LINE L1 7478 7596 -48 4 866 1738 240 18 22 chr6 36835079 36835526 -112681511 - Lx6 LINE L1 -26 7434 6990 4 866 359 257 171 10 chr6 36835833 36836026 -112681011 + Lx8 LINE L1 7249 7472 -1 4 866 319 253 140 29 chr6 36836091 36836262 -112680775 + L1M5 LINE L1 5036 5225 -921 4 866 235 292 53 15 chr6 36836371 36836503 -112680534 + L1M5 LINE L1 5344 5480 -760 4 866 1008 291 61 15 chr6 36836631 36837039 -112679998 + Lx8 LINE L1 7026 7452 -21 4 866 7647 72 18 4 chr6 36837366 36839180 -112677857 + L1_Mus1 LINE L1 4731 6567 0 4 866 234 322 92 42 chr6 36839206 36839326 -112677711 + B1F1 SINE Alu 4 129 -20 4 866 269 288 40 14 chr6 36839348 36839422 -112677615 + ID4_ SINE ID 8 83 0 4 866 555 296 6 18 chr6 36839441 36839606 -112677431 + RSINE1 SINE B4 3 165 0 4 866 322 75 0 0 chr6 36839606 36839646 -112677391 + HAL1-3A_ME LINE L1 1977 2016 -842 4 866 186 43 0 0 chr6 36839664 36839687 -112677350 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 866 252 0 0 0 chr6 36839883 36839911 -112677126 + (A)n Simple_repeat Simple_repeat 1 28 0 4 866 378 0 0 0 chr6 36839952 36839994 -112677043 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 866 364 225 51 44 chr6 36840076 36840234 -112676803 - L1_Rod LINE L1 -547 5300 5142 4 866 2662 99 13 3 chr6 36841063 36841446 -112675591 + Lx LINE L1 6262 6648 -6 4 866 198 118 0 0 chr6 36841659 36841693 -112675344 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 4 866 252 320 118 20 chr6 36841695 36841797 -112675240 - PB1 SINE Alu -3 124 13 4 866 232 322 0 65 chr6 36841732 36841825 -112675212 - ID_B1 SINE B4 -67 157 71 4 866 3090 63 20 0 chr6 36843518 36843917 -112673120 + L1_Mus1 LINE L1 6159 6565 -2 4 866 938 244 5 14 chr6 36844905 36845121 -112671916 + B3 SINE B2 2 215 -1 4 866 575 277 12 6 chr6 36849008 36849175 -112667862 - Lx6 LINE L1 -26 7434 7267 4 866 510 196 51 0 chr6 36849363 36849501 -112667536 + L1M2 LINE L1 4599 4743 -1400 4 866 601 259 173 36 chr6 36849501 36849749 -112667288 + Lx9 LINE L1 7215 7515 -129 4 866 429 20 0 0 chr6 36849749 36849799 -112667238 + (CATA)n Simple_repeat Simple_repeat 3 52 0 4 866 601 259 173 36 chr6 36849799 36849914 -112667123 + Lx9 LINE L1 7516 7628 -16 4 866 485 256 129 112 chr6 36849940 36850034 -112667003 + L1M2 LINE L1 4731 4825 -1318 4 866 1030 93 0 6 chr6 36850034 36850196 -112666841 + L1_Mus4 LINE L1 6470 6630 -6 4 866 485 256 129 112 chr6 36850196 36850753 -112666284 + L1M2 LINE L1 4826 5393 -750 4 866 254 298 19 19 chr6 36850997 36851103 -112665934 + Lx9 LINE L1 7094 7199 -445 4 866 360 123 245 11 chr6 36852615 36852712 -112664325 + B1_Mus2 SINE Alu 15 110 -39 4 866 214 254 36 0 chr6 36852735 36852790 -112664247 + CT-rich Low_complexity Low_complexity 6 62 0 4 866 27 0 0 0 chr6 36855358 36855385 -112661652 + AT_rich Low_complexity Low_complexity 1 27 0 4 866 916 220 35 5 chr6 36855388 36855589 -112661448 - B3 SINE B2 -3 213 7 4 866 216 0 0 0 chr6 36855610 36855634 -112661403 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 4 866 1133 65 0 0 chr6 36855640 36855778 -112661259 - B1_Mus1 SINE Alu -10 138 1 4 866 225 0 0 0 chr6 36855790 36855815 -112661222 + (T)n Simple_repeat Simple_repeat 1 25 0 5 866 225 250 0 35 chr6 36856406 36856464 -112660573 - PB1 SINE Alu -66 61 6 5 866 201 74 0 0 chr6 36856692 36856719 -112660318 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 5 866 214 304 43 0 chr6 36857954 36858023 -112659014 + L2c LINE L2 3272 3343 -44 5 866 3830 109 79 2 chr6 36858166 36858736 -112658301 - Lx LINE L1 -6 6648 6035 5 866 34 0 0 0 chr6 36859013 36859047 -112657990 + AT_rich Low_complexity Low_complexity 1 34 0 5 866 335 286 190 6 chr6 36859408 36859587 -112657450 - ID_B1 SINE B4 -10 214 3 5 866 369 246 147 90 chr6 36860189 36860205 -112656832 - Lx5 LINE L1 -2 7048 7033 5 866 198 0 0 0 chr6 36860205 36860227 -112656810 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 5 866 369 246 147 90 chr6 36860227 36860366 -112656671 - Lx5 LINE L1 -18 7032 6884 5 866 378 0 0 0 chr6 36860703 36860745 -112656292 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 866 611 236 136 66 chr6 36860765 36861003 -112656034 - MTD LTR MaLR -48 371 94 5 866 365 292 138 16 chr6 36861003 36861191 -112655846 + MER2 DNA MER2_type 1 211 -134 5 866 1154 253 5 132 chr6 36862391 36862769 -112654268 - MTE2a LTR MaLR -48 331 2 5 866 996 206 5 23 chr6 36863211 36863425 -112653612 - Lx9 LINE L1 -1052 6592 6383 5 866 543 151 17 0 chr6 36863483 36863602 -112653435 + Lx9 LINE L1 7515 7635 -9 5 866 650 280 45 6 chr6 36864871 36865047 -112651990 - B3A SINE B2 -15 183 1 5 866 378 0 0 0 chr6 36866044 36866086 -112650951 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 866 5200 78 36 14 chr6 36866606 36867326 -112649711 + L1Md_F2 LINE L1 5847 6582 0 5 866 374 283 43 56 chr6 36867687 36867848 -112649189 + RLTR14 LTR ERV1 224 382 0 5 866 212 0 36 0 chr6 36867967 36867995 -112649042 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 866 31 44 0 0 chr6 36868325 36868370 -112648667 + AT_rich Low_complexity Low_complexity 1 45 0 5 866 1891 268 54 38 chr6 36868501 36869126 -112647911 + Lx6 LINE L1 6826 7460 0 5 866 686 204 21 21 chr6 36871012 36871157 -112645880 - B1_Mus2 SINE Alu -2 145 1 5 866 2719 140 33 4 chr6 36871181 36871639 -112645398 - Lx3C LINE L1 -1 6975 6505 5 866 1330 123 0 5 chr6 36871639 36871851 -112645186 - Lx3C LINE L1 -1101 5875 5665 5 866 487 188 16 33 chr6 36872226 36872347 -112644690 - Lx9 LINE L1 -201 7443 7325 5 866 1241 14 18 13 chr6 36872354 36872581 -112644456 + (TG)n Simple_repeat Simple_repeat 1 227 0 5 866 193 254 73 0 chr6 36873183 36873238 -112643799 + MER5A DNA MER1_type 117 175 -14 5 866 185 35 69 0 chr6 36873638 36873667 -112643370 + (CATATA)n Simple_repeat Simple_repeat 1 31 0 5 866 243 0 0 0 chr6 36873900 36873927 -112643110 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 866 830 247 154 0 chr6 36874351 36874533 -112642504 - B3 SINE B2 -6 210 1 5 866 24 32 0 0 chr6 36874616 36874647 -112642390 + AT_rich Low_complexity Low_complexity 1 31 0 5 866 1455 28 0 0 chr6 36874665 36874847 -112642190 - L1Md_T LINE L1 -642 5940 5759 5 866 5539 34 0 0 chr6 36874848 36875498 -112641539 + L1Md_T LINE L1 5933 6582 0 5 866 207 357 57 13 chr6 36875552 36875721 -112641316 + MIR SINE MIR 1 182 -86 5 866 401 162 68 0 chr6 36875971 36876045 -112640992 - B1_Mus1 SINE Alu -66 82 4 5 866 400 243 17 39 chr6 36876992 36877172 -112639865 + (CATA)n Simple_repeat Simple_repeat 3 178 0 5 866 456 105 0 0 chr6 36877264 36877340 -112639697 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 866 585 0 0 0 chr6 36878744 36878809 -112638228 + (TTC)n Simple_repeat Simple_repeat 2 66 0 5 866 279 0 0 0 chr6 36878809 36878840 -112638197 + (TTA)n Simple_repeat Simple_repeat 1 31 0 5 866 381 75 0 0 chr6 36879360 36879413 -112637624 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 5 866 278 322 59 8 chr6 36881045 36881164 -112635873 - MER20 DNA MER1_type 0 219 95 5 866 351 0 0 0 chr6 36881834 36881873 -112635164 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 866 245 237 168 21 chr6 36882853 36882948 -112634089 - RMER12 LTR ERVK -484 838 730 5 866 2002 81 0 0 chr6 36883610 36883907 -112633130 + L1_Mm LINE L1 1915 2211 -3672 5 866 1212 83 0 6 chr6 36883902 36884083 -112632954 + MusHAL1 LINE L1 1681 1860 -852 5 866 303 122 0 0 chr6 36884419 36884468 -112632569 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 5 866 367 335 56 31 chr6 36884468 36884628 -112632409 + HAL1-3A_ME LINE L1 2284 2447 -411 5 866 21 0 0 0 chr6 36885514 36885535 -112631502 + AT_rich Low_complexity Low_complexity 1 21 0 5 866 782 260 35 7 chr6 36885574 36885780 -112631257 - B3A SINE B2 -6 210 6 5 866 27 29 0 0 chr6 36886053 36886087 -112630950 + AT_rich Low_complexity Low_complexity 1 34 0 5 866 1701 51 0 0 chr6 36886604 36886818 -112630219 + L1_Mus2 LINE L1 6353 6566 0 5 866 255 288 0 0 chr6 36887150 36887261 -112629776 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 866 257 295 83 21 chr6 36889166 36889276 -112627761 + B1F1 SINE Alu 5 120 -29 5 866 6264 57 3 3 chr6 36890624 36891367 -112625670 - L1Md_F2 LINE L1 -1 6581 5839 5 866 6420 118 32 22 chr6 36891367 36893209 -112623828 - L1Md_A LINE L1 -3807 2076 210 5 866 189 214 0 0 chr6 36893209 36893251 -112623786 + CT-rich Low_complexity Low_complexity 2 43 0 5 866 1247 61 0 0 chr6 36893254 36893401 -112623636 - B1_Mm SINE Alu 0 147 1 5 866 245 241 37 37 chr6 36894257 36894339 -112622698 + GA-rich Low_complexity Low_complexity 4 85 0 5 866 460 271 185 0 chr6 36895472 36895623 -112621414 - B3A SINE B2 -17 181 3 5 866 249 33 0 0 chr6 36896297 36896327 -112620710 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 866 4411 91 0 0 chr6 36896476 36897034 -112620003 + L1_Mus1 LINE L1 6010 6567 0 5 866 1117 316 59 116 chr6 36897157 36897719 -112619318 + MLT2B3 LTR ERVL 23 552 -2 5 866 432 0 0 0 chr6 36898458 36898506 -112618531 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 866 1267 62 0 0 chr6 36899063 36899224 -112617813 + B2_Mm2 SINE B2 1 161 -34 5 866 360 111 0 0 chr6 36899225 36899279 -112617758 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 866 264 88 0 0 chr6 36899279 36899313 -112617724 + (GGA)n Simple_repeat Simple_repeat 3 36 0 5 866 868 261 53 95 chr6 36901221 36901637 -112615400 + MTE2a LTR MaLR 5 398 -21 5 866 649 277 92 0 chr6 36901903 36902152 -112614885 + L1MC2 LINE L1 5035 5306 -840 5 866 497 270 30 35 chr6 36902223 36902426 -112614611 - Lx8 LINE L1 -1558 5915 5714 5 866 922 265 84 16 chr6 36902427 36902738 -112614299 + Lx8 LINE L1 6862 7193 -280 5 866 758 274 75 24 chr6 36902816 36903108 -112613929 + L1MC2 LINE L1 5652 5958 -386 5 866 474 326 101 53 chr6 36903124 36903351 -112613686 + Lx8 LINE L1 7023 7260 -213 5 866 2435 114 15 148 chr6 36904600 36905054 -112611983 + ORR1B1 LTR MaLR 1 394 0 5 866 2525 145 36 24 chr6 36905644 36906060 -112610977 - MTC LTR MaLR 0 421 1 5 866 341 309 19 9 chr6 36906101 36906209 -112610828 + B1F SINE Alu 40 148 -1 5 866 515 333 19 0 chr6 36906209 36906371 -112610666 + RSINE1 SINE B4 1 165 0 5 866 572 236 149 6 chr6 36906461 36906636 -112610401 + MER67D LTR ERV1 1 202 -509 5 866 451 243 9 9 chr6 36906803 36906915 -112610122 + MurSatRep1 Unknown Unknown 617 728 -1409 5 866 266 271 53 53 chr6 36907269 36907382 -112609655 + MMSAT4 Satellite Satellite 51 163 -5 5 866 232 317 32 32 chr6 36907594 36907718 -112609319 + MMSAT4 Satellite Satellite 40 163 -5 5 866 294 271 61 46 chr6 36907842 36908050 -112608987 + MMSAT4 Satellite Satellite 1 211 -5 5 866 233 226 105 23 chr6 36908071 36908157 -112608880 + MurSatRep1 Unknown Unknown 1708 1800 -337 5 866 328 273 38 38 chr6 36908094 36908311 -112608726 + MMSAT4 Satellite Satellite 1 217 -5 5 866 257 311 32 32 chr6 36908440 36908563 -112608474 + MMSAT4 Satellite Satellite 41 163 -5 5 866 273 303 32 24 chr6 36908842 36908967 -112608070 + MMSAT4 Satellite Satellite 37 162 -6 5 866 479 289 0 9 chr6 36909956 36910071 -112606966 + B1F SINE Alu 1 114 -35 5 866 859 231 180 16 chr6 36910098 36910415 -112606622 + Lx7 LINE L1 6953 7321 -375 5 866 26 0 0 0 chr6 36910417 36910443 -112606594 + AT_rich Low_complexity Low_complexity 1 26 0 5 866 1038 244 160 30 chr6 36911694 36911994 -112605043 + MTE2a LTR MaLR 28 366 -13 5 866 215 330 11 43 chr6 36912690 36912782 -112604255 + L3 LINE CR1 3490 3578 -911 5 866 557 307 57 0 chr6 36912990 36913130 -112603907 + RSINE1 SINE B4 3 150 -15 5 866 278 343 76 65 chr6 36913542 36913726 -112603311 + LTR16A LTR ERVL 264 449 -2 5 866 991 162 12 0 chr6 36914120 36914280 -112602757 + ORR1D1 LTR MaLR 1 162 -212 5 866 365 344 85 11 chr6 36914364 36914552 -112602485 + L2a LINE L2 2944 3145 -281 5 866 2701 260 75 24 chr6 36916432 36916499 -112600538 + Lx6 LINE L1 6674 6740 -720 5 866 286 0 0 83 chr6 36916499 36916547 -112600490 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 5 866 2701 260 75 24 chr6 36916547 36917227 -112599810 + Lx6 LINE L1 6741 7459 -1 5 866 240 261 193 0 chr6 36917757 36917845 -112599192 + L1M2 LINE L1 5536 5640 -672 5 866 378 0 0 0 chr6 36917884 36917926 -112599111 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 866 510 266 125 26 chr6 36917949 36918181 -112598856 + L1MD3 LINE L1 7518 7772 -223 5 866 306 267 92 118 chr6 36918311 36918464 -112598573 + Lx9 LINE L1 5839 5987 -1657 5 866 379 274 143 77 chr6 36919403 36919585 -112597452 - MIRb SINE MIR -34 234 38 5 866 483 18 0 0 chr6 36920803 36920859 -112596178 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 866 510 96 0 0 chr6 36921247 36921320 -112595717 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 5 866 765 192 88 8 chr6 36921335 36921532 -112595505 - Lx4B LINE L1 -3 7055 6865 6 866 208 303 118 9 chr6 36926454 36926564 -112590473 - MIRc SINE MIR -106 162 41 6 866 335 324 36 55 chr6 36927727 36927916 -112589121 + MIR SINE MIR 77 268 0 6 866 369 109 0 0 chr6 36928724 36928779 -112588258 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 866 1062 109 13 13 chr6 36929252 36929401 -112587636 - B1_Mur3 SINE Alu 0 149 1 6 866 1115 193 0 24 chr6 36930264 36930471 -112586566 + MTC LTR MaLR 1 202 -219 6 866 234 0 0 0 chr6 36931699 36931725 -112585312 + (A)n Simple_repeat Simple_repeat 1 26 0 6 866 243 247 0 110 chr6 36932664 36932746 -112584291 + MLT1A1 LTR MaLR 317 389 -19 6 866 719 289 90 93 chr6 36932945 36933323 -112583714 + MTEa LTR MaLR 1 377 -2 6 866 410 314 23 81 chr6 36933429 36933602 -112583435 - RSINE1 SINE B4 0 165 3 6 866 1179 117 0 0 chr6 36933952 36934132 -112582905 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 866 414 57 0 0 chr6 36934147 36934200 -112582837 + (CATA)n Simple_repeat Simple_repeat 4 56 0 6 866 201 306 0 0 chr6 36934707 36934769 -112582268 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 866 636 291 85 48 chr6 36934804 36935180 -112581857 + MLT1B LTR MaLR 1 390 0 6 866 396 0 0 0 chr6 36935240 36935284 -112581753 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 866 269 346 5 11 chr6 36935467 36935562 -112581475 - ID4_ SINE ID -47 105 9 6 866 479 269 24 56 chr6 36935603 36935729 -112581308 + RSINE1 SINE B4 3 124 -41 6 866 440 362 53 42 chr6 36938786 36939242 -112577795 + L1MD2 LINE L1 109 569 -5978 6 866 492 308 47 86 chr6 36939585 36940015 -112577022 + L1MD2 LINE L1 3467 3888 -2656 6 866 558 277 142 11 chr6 36940015 36940205 -112576832 - B3 SINE B2 -1 215 1 6 866 492 308 47 86 chr6 36940205 36940283 -112576754 + L1MD2 LINE L1 3889 3955 -2589 6 866 880 232 42 24 chr6 36940368 36940580 -112576457 + B3 SINE B2 1 216 0 6 866 300 291 116 26 chr6 36940597 36940752 -112576285 + L1MC LINE L1 4036 4204 -1942 6 866 413 354 82 53 chr6 36940937 36941488 -112575549 + L1ME1 LINE L1 5551 6117 -62 6 866 556 167 40 7 chr6 36942153 36942304 -112574733 + RMER17B LTR ERVK 305 460 -498 6 866 774 234 10 68 chr6 36942365 36942571 -112574466 + B3A SINE B2 5 198 0 6 866 217 325 36 12 chr6 36944052 36944136 -112572901 + MIR SINE MIR 22 107 -161 6 866 711 76 186 0 chr6 36947028 36947146 -112569891 + B1_Mus1 SINE Alu 9 148 0 6 866 204 273 0 0 chr6 36947606 36947683 -112569354 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 866 209 83 28 0 chr6 36947826 36947862 -112569175 + (GGAAA)n Simple_repeat Simple_repeat 4 40 0 6 866 516 32 0 0 chr6 36947980 36948042 -112568995 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 866 600 254 43 0 chr6 36950532 36950670 -112566367 - RSINE1 SINE B4 -19 146 3 6 866 477 0 0 0 chr6 36950698 36950751 -112566286 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 866 267 114 0 0 chr6 36951372 36951416 -112565621 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 866 378 294 23 16 chr6 36951623 36951751 -112565286 + ORR1E LTR MaLR 20 148 -211 6 866 5842 104 20 11 chr6 36952069 36952913 -112564124 + Lx2 LINE L1 6144 6995 -2 6 866 266 0 29 0 chr6 36952917 36952951 -112564086 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 866 247 302 72 77 chr6 36954690 36954898 -112562139 + MLT1D LTR MaLR 31 237 -268 6 866 341 232 18 18 chr6 36955969 36956083 -112560954 - Lx6 LINE L1 -26 7434 7321 6 866 1304 101 11 0 chr6 36956789 36956967 -112560070 + B2_Mm1t SINE B2 2 181 -12 6 866 289 87 171 32 chr6 36956991 36957099 -112559938 + B2_Mm2 SINE B2 48 189 -6 6 866 1196 21 28 0 chr6 36957103 36957245 -112559792 + B1_Mus1 SINE Alu 2 147 -1 6 866 532 316 144 16 chr6 36959746 36960003 -112557034 - B4A SINE B4 -2 290 1 6 866 295 311 49 62 chr6 36960421 36960565 -112556472 + ORR1E LTR MaLR 161 302 -57 6 866 632 246 248 29 chr6 36960949 36961246 -112555791 + MTE2a LTR MaLR 16 377 -2 6 866 1066 78 21 0 chr6 36961509 36961651 -112555386 - B1_Mus1 SINE Alu -2 146 2 6 866 907 113 118 6 chr6 36961724 36961893 -112555144 - B2_Mm2 SINE B2 -7 188 1 6 867 1774 196 91 50 chr6 36962331 36962814 -112554223 - Lx7 LINE L1 0 7696 7194 6 867 221 259 22 45 chr6 36963621 36963710 -112553327 + GA-rich Low_complexity Low_complexity 4 90 0 6 867 6041 56 0 1 chr6 36964112 36964860 -112552177 + L1Md_F2 LINE L1 4840 5586 -297 6 867 7835 65 8 0 chr6 36964860 36965844 -112551193 + L1Md_F2 LINE L1 5587 6578 -4 6 867 2177 8 0 0 chr6 36965844 36966084 -112550953 + L1Md_A LINE L1 6342 6581 -1 6 867 221 0 0 33 chr6 36967995 36968025 -112549012 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 6 867 1691 31 0 0 chr6 36968371 36968563 -112548474 - B2_Mm1t SINE B2 -1 192 1 6 867 220 333 0 0 chr6 36968908 36968965 -112548072 + polypyrimidine Low_complexity Low_complexity 4 60 0 6 867 271 303 0 73 chr6 36969335 36969431 -112547606 - PB1D10 SINE Alu 0 117 29 6 867 845 266 90 54 chr6 36970442 36970848 -112546189 + MTE2a LTR MaLR 1 419 0 6 867 200 100 25 0 chr6 36971037 36971077 -112545960 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 867 195 42 0 0 chr6 36971078 36971102 -112545935 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 867 256 309 11 0 chr6 36971853 36971947 -112545090 + GA-rich Low_complexity Low_complexity 1 95 0 6 867 324 0 0 0 chr6 36972703 36972739 -112544298 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 867 594 206 147 0 chr6 36972740 36972876 -112544161 - B3A SINE B2 -41 157 2 6 867 527 293 158 18 chr6 36974118 36974508 -112542529 - MLT1E2 LTR MaLR -48 576 132 6 867 22 0 0 0 chr6 36975163 36975185 -112541852 + AT_rich Low_complexity Low_complexity 1 22 0 6 867 574 304 79 65 chr6 36977173 36977451 -112539586 + Lx8 LINE L1 7155 7436 -37 6 867 24 0 0 0 chr6 36977502 36977526 -112539511 + AT_rich Low_complexity Low_complexity 1 24 0 6 867 207 100 0 0 chr6 36978673 36978703 -112538334 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 6 867 242 322 59 8 chr6 36978959 36979078 -112537959 - Lx8 LINE L1 -143 7330 7206 6 867 326 241 13 0 chr6 36979431 36979510 -112537527 + ID SINE ID 4 83 -141 6 867 705 275 43 14 chr6 36982632 36982842 -112534195 - B3 SINE B2 0 216 1 6 867 548 299 86 65 chr6 36983728 36984007 -112533030 - Lx8 LINE L1 -2 7471 7187 6 867 259 348 37 0 chr6 36985052 36985187 -112531850 + MIRb SINE MIR 82 221 -47 6 867 332 247 115 13 chr6 36986227 36986344 -112530693 + PB1 SINE Alu 2 127 0 6 867 214 292 13 53 chr6 36986357 36986433 -112530604 + ID4 SINE ID 8 80 -3 6 867 422 354 131 10 chr6 36988909 36989206 -112527831 + MER2 DNA MER2_type 7 339 -6 6 867 3281 41 8 0 chr6 36990157 36990550 -112526487 + MTA_Mm LTR MaLR 1 396 0 6 867 22 35 0 0 chr6 36990874 36990903 -112526134 + AT_rich Low_complexity Low_complexity 1 29 0 6 867 639 259 151 0 chr6 36991242 36991427 -112525610 + B3 SINE B2 1 213 -3 6 867 1177 75 0 0 chr6 36991695 36991842 -112525195 + B1_Mus1 SINE Alu 1 147 -1 6 867 283 0 23 45 chr6 36991851 36991895 -112525142 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 6 867 333 0 0 0 chr6 36992206 36992243 -112524794 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 6 867 24 0 0 0 chr6 36992732 36992756 -112524281 + AT_rich Low_complexity Low_complexity 1 24 0 6 867 1242 210 132 49 chr6 36993688 36994058 -112522979 - MTD LTR MaLR -16 403 3 6 867 577 266 15 164 chr6 36994556 36994885 -112522152 + B4A SINE B4 1 280 -12 6 867 24 0 0 0 chr6 36996763 36996787 -112520250 + AT_rich Low_complexity Low_complexity 1 24 0 6 867 189 147 0 0 chr6 36996794 36996828 -112520209 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 867 648 248 7 7 chr6 36996840 36996990 -112520047 - RSINE1 SINE B4 -5 160 11 6 867 698 122 9 0 chr6 36997033 36997148 -112519889 + B1_Mur3 SINE Alu 34 149 0 6 867 314 231 25 13 chr6 36997245 36997324 -112519713 + RSINE1 SINE B4 6 85 -80 6 867 227 217 0 0 chr6 36997430 36997476 -112519561 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 6 867 451 263 80 13 chr6 36997477 36997743 -112519294 + L1M2 LINE L1 5224 5503 -665 6 867 225 83 0 0 chr6 36999199 36999235 -112517802 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 867 1011 24 0 0 chr6 36999235 36999361 -112517676 - B1_Mus1 SINE Alu -13 135 10 6 867 247 217 0 46 chr6 36999657 36999744 -112517293 + CT-rich Low_complexity Low_complexity 1 83 0 6 867 330 306 43 36 chr6 37000360 37000499 -112516538 + B3A SINE B2 2 141 -57 1 867 216 0 0 0 chr6 37000507 37000531 -112516506 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 867 271 356 67 0 chr6 37000983 37001073 -112515964 + B1F SINE Alu 2 97 -52 3 867 782 256 45 23 chr6 37002843 37003063 -112513974 + B4A SINE B4 26 250 -42 4 867 504 0 0 0 chr6 37003073 37003129 -112513908 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 867 348 24 0 0 chr6 37003129 37003169 -112513868 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 867 492 238 195 0 chr6 37005755 37005919 -112511118 + ID_B1 SINE B4 2 197 -27 7 867 232 321 12 0 chr6 37009957 37010041 -112506996 + MIRb SINE MIR 128 212 -56 8 867 219 114 0 0 chr6 37014101 37014136 -112502901 + (CACG)n Simple_repeat Simple_repeat 1 35 0 9 867 232 375 15 30 chr6 37014880 37015012 -112502025 - MER94 DNA AcHobo -4 130 1 1 867 231 317 65 28 chr6 37016482 37016589 -112500448 - MER58A DNA MER1_type -108 116 6 1 867 189 0 0 0 chr6 37016809 37016830 -112500207 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 1 867 441 0 0 0 chr6 37017679 37017728 -112499309 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 867 849 108 353 0 chr6 37017980 37018147 -112498890 - URR1A DNA MER1_type 0 226 1 1 867 2627 286 38 25 chr6 37018259 37019119 -112497918 - Lx9 LINE L1 -438 7206 6338 1 867 261 57 0 0 chr6 37019119 37019154 -112497883 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 867 2627 332 41 30 chr6 37019154 37019299 -112497738 - Lx9 LINE L1 -1307 6337 6058 1 867 781 328 141 12 chr6 37019446 37019937 -112497100 + MER68 LTR ERVL 10 563 0 1 867 540 0 0 0 chr6 37020639 37020699 -112496338 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 867 986 295 3 7 chr6 37020768 37021051 -112495986 - B4A SINE B4 -10 282 1 1 867 183 42 0 0 chr6 37024636 37024660 -112492377 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 867 199 164 0 52 chr6 37024666 37024724 -112492313 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2 867 412 285 53 130 chr6 37024789 37025051 -112491986 - B4A SINE B4 -49 243 2 2 867 222 37 0 0 chr6 37025546 37025573 -112491464 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 867 654 146 0 0 chr6 37026921 37027031 -112490006 + (TTG)n Simple_repeat Simple_repeat 2 111 0 2 867 208 188 45 30 chr6 37027079 37027145 -112489892 + GA-rich Low_complexity Low_complexity 1 67 0 2 867 219 69 0 0 chr6 37027145 37027174 -112489863 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2 867 369 0 0 0 chr6 37027578 37027619 -112489418 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 867 283 338 143 34 chr6 37027777 37028071 -112488966 + ERVL-int LTR ERVL 2509 2834 -2162 2 867 379 338 73 43 chr6 37028045 37028339 -112488698 + ERVL-int LTR ERVL 2742 3168 -2589 2 867 185 0 40 0 chr6 37028951 37028976 -112488061 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 867 945 198 33 37 chr6 37030379 37030594 -112486443 - B3 SINE B2 -2 214 1 3 867 225 128 0 0 chr6 37031018 37031065 -112485972 + (T)n Simple_repeat Simple_repeat 1 47 0 3 867 728 201 40 34 chr6 37031219 37031394 -112485643 - MTEb LTR MaLR -7 372 197 3 867 431 35 18 0 chr6 37031394 37031451 -112485586 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 867 674 209 162 23 chr6 37031451 37031667 -112485370 - MTEb LTR MaLR -133 246 1 3 867 183 80 0 0 chr6 37031730 37031755 -112485282 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 867 374 250 0 0 chr6 37032805 37032881 -112484156 + ID4_ SINE ID 3 78 -5 3 867 225 65 0 0 chr6 37032881 37032912 -112484125 + (CAAG)n Simple_repeat Simple_repeat 2 32 0 3 867 639 0 0 0 chr6 37032928 37032999 -112484038 + (GGGA)n Simple_repeat Simple_repeat 1 71 0 3 867 462 269 103 0 chr6 37033020 37033165 -112483872 - L1MB1 LINE L1 -45 6144 5985 3 867 243 183 16 50 chr6 37033162 37033234 -112483803 + L1M3 LINE L1 5848 5922 -246 3 867 225 0 0 0 chr6 37033531 37033556 -112483481 + (T)n Simple_repeat Simple_repeat 1 25 0 4 867 33 25 0 0 chr6 37033598 37033638 -112483399 + AT_rich Low_complexity Low_complexity 1 40 0 4 867 804 230 69 10 chr6 37034105 37034307 -112482730 + B3 SINE B2 2 215 -1 4 867 26 0 0 0 chr6 37034340 37034366 -112482671 + AT_rich Low_complexity Low_complexity 1 26 0 4 867 293 187 13 0 chr6 37035387 37035462 -112481575 + CT-rich Low_complexity Low_complexity 1 76 0 4 867 384 119 0 0 chr6 37035499 37035558 -112481479 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 867 315 0 0 0 chr6 37036730 37036765 -112480272 + (TCTA)n Simple_repeat Simple_repeat 1 35 0 4 867 249 33 0 0 chr6 37037275 37037305 -112479732 + (TTG)n Simple_repeat Simple_repeat 1 30 0 4 867 180 0 0 0 chr6 37038238 37038258 -112478779 + (A)n Simple_repeat Simple_repeat 1 20 0 4 867 1154 62 0 32 chr6 37038788 37038973 -112478064 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 4 867 612 125 0 0 chr6 37038986 37039082 -112477955 + (GGGA)n Simple_repeat Simple_repeat 3 98 0 4 867 789 263 68 31 chr6 37042188 37042448 -112474589 + MLT1A0 LTR MaLR 25 296 -69 5 867 230 0 33 0 chr6 37042448 37042478 -112474559 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 867 789 263 68 31 chr6 37042478 37042539 -112474498 + MLT1A0 LTR MaLR 297 358 -7 5 867 247 296 101 9 chr6 37044228 37044337 -112472700 - PB1 SINE Alu -7 120 2 5 867 648 211 83 24 chr6 37044566 37044868 -112472169 - RMER6B LTR ERVK -2 459 92 5 867 1080 90 0 14 chr6 37044871 37045017 -112472020 + B1_Mus1 SINE Alu 5 148 0 5 867 231 167 0 0 chr6 37045045 37045087 -112471950 + G-rich Low_complexity Low_complexity 5 46 0 5 867 230 127 125 16 chr6 37045095 37045159 -112471878 - RMER6B LTR ERVK -359 102 32 5 867 547 111 213 0 chr6 37045130 37045238 -112471799 - RMER6B LTR ERVK -327 134 4 5 867 735 179 0 0 chr6 37045784 37045924 -112471113 + CT-rich Low_complexity Low_complexity 2 141 0 5 867 234 62 0 0 chr6 37046655 37046687 -112470350 + (T)n Simple_repeat Simple_repeat 1 32 0 5 867 222 279 161 49 chr6 37048244 37048387 -112468650 - MIRc SINE MIR -67 201 37 5 867 204 158 0 0 chr6 37048824 37048862 -112468175 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 5 867 31 0 0 0 chr6 37048881 37048912 -112468125 + AT_rich Low_complexity Low_complexity 1 31 0 6 867 226 186 0 44 chr6 37049452 37049497 -112467540 + polypurine Low_complexity Low_complexity 3 45 0 6 867 419 269 0 9 chr6 37051312 37051421 -112465616 + MTEa LTR MaLR 3 110 -269 6 867 396 0 0 0 chr6 37051708 37051752 -112465285 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 867 639 0 0 0 chr6 37052104 37052175 -112464862 + (GA)n Simple_repeat Simple_repeat 2 72 0 6 867 376 285 148 34 chr6 37052548 37052784 -112464253 + MTEa LTR MaLR 82 344 -15 6 867 1244 93 59 27 chr6 37053073 37053260 -112463777 + B2_Mm2 SINE B2 1 193 -2 6 867 507 17 0 0 chr6 37053785 37053845 -112463192 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 867 250 302 30 42 chr6 37054014 37054180 -112462857 + GA-rich Low_complexity Low_complexity 1 164 0 6 867 31209 102 24 12 chr6 37056191 37062104 -112454933 + L1_Mus2 LINE L1 592 6566 0 6 867 231 276 0 26 chr6 37062642 37062720 -112454317 - ORR1E LTR MaLR -23 356 281 6 867 269 309 104 27 chr6 37062785 37062968 -112454069 - ORR1E LTR MaLR -162 197 1 6 867 477 0 0 0 chr6 37064735 37064788 -112452249 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 7 867 565 191 6 1 chr6 37065216 37065323 -112451714 + B1_Mus1 SINE Alu 3 112 -8 7 867 639 39 0 0 chr6 37065323 37065401 -112451636 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 7 867 704 285 31 62 chr6 37066868 37067160 -112449877 + B4A SINE B4 10 292 0 7 867 240 253 10 40 chr6 37067296 37067395 -112449642 - Lx8 LINE L1 -20 7453 7358 7 867 396 138 0 0 chr6 37067427 37067492 -112449545 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 867 1237 269 40 111 chr6 37067492 37067995 -112449042 - Lx8 LINE L1 -145 7328 6862 7 867 612 291 80 0 chr6 37067998 37068197 -112448840 + Lx8 LINE L1 6673 6887 -586 7 867 198 143 0 0 chr6 37068456 37068491 -112448546 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 867 580 293 69 118 chr6 37069736 37070042 -112446995 - B4 SINE B4 0 292 2 7 867 370 275 99 40 chr6 37071161 37071362 -112445675 - MLT1C LTR MaLR -30 437 225 7 867 639 0 0 0 chr6 37071378 37071449 -112445588 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 867 979 260 41 44 chr6 37071864 37072182 -112444855 - ORR1E LTR MaLR -25 334 18 8 867 459 224 10 1 chr6 37072175 37072315 -112444722 - ORR1E-int LTR MaLR -10 1360 1262 8 867 4802 129 9 3 chr6 37072315 37073071 -112443966 + L1_Mur2 LINE L1 4134 4894 -983 8 867 2416 125 32 15 chr6 37073136 37073542 -112443495 + MTC LTR MaLR 4 416 -5 8 867 3226 275 55 70 chr6 37073542 37074696 -112442341 - ORR1E-int LTR MaLR -179 1191 55 8 867 222 37 0 0 chr6 37074696 37074723 -112442314 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 867 3226 275 55 70 chr6 37074723 37074776 -112442261 - ORR1E-int LTR MaLR -1316 54 2 8 867 948 279 110 12 chr6 37074778 37075105 -112441932 - ORR1E LTR MaLR 0 359 1 8 867 1824 230 68 155 chr6 37075378 37076279 -112440758 + RMER17B LTR ERVK 1 822 -136 8 867 316 236 26 78 chr6 37076663 37076778 -112440259 + RSINE1 SINE B4 36 144 -21 8 867 22 56 0 0 chr6 37076787 37076823 -112440214 + AT_rich Low_complexity Low_complexity 1 36 0 8 867 435 38 0 0 chr6 37077428 37077481 -112439556 + (TC)n Simple_repeat Simple_repeat 1 53 0 8 867 600 84 0 0 chr6 37077826 37077909 -112439128 + (GAAA)n Simple_repeat Simple_repeat 3 85 0 8 867 740 279 9 31 chr6 37078077 37078303 -112438734 - ID_B1 SINE B4 -2 222 2 8 867 458 173 100 0 chr6 37078642 37078752 -112438285 - RMER4A LTR ERVK 0 466 346 9 867 201 147 0 0 chr6 37078754 37078788 -112438249 + (GGGAGA)n Simple_repeat Simple_repeat 1 34 0 9 867 4764 65 5 5 chr6 37079521 37080128 -112436909 + L1_Mus1 LINE L1 5960 6566 -1 9 867 194 254 78 16 chr6 37081863 37081927 -112435110 - MIRb SINE MIR -166 102 35 9 867 397 281 0 0 chr6 37082458 37082540 -112434497 - ID4_ SINE ID 0 83 2 9 867 2532 206 48 76 chr6 37082595 37083326 -112433711 - RMER1B Other Other -10 1056 163 9 867 523 280 94 45 chr6 37083329 37083553 -112433484 + MTE2a LTR MaLR 132 366 -13 9 867 227 326 67 0 chr6 37083560 37083649 -112433388 - B1F1 SINE Alu -54 95 1 9 867 859 290 46 72 chr6 37085329 37085675 -112431362 + MLT1A0 LTR MaLR 21 357 -8 9 867 199 351 60 13 chr6 37086189 37086339 -112430698 - MER5B DNA MER1_type 0 178 22 9 867 621 337 131 17 chr6 37086967 37087493 -112429544 + L2 LINE L2 1856 2441 -978 1 867 683 12 0 12 chr6 37087537 37087622 -112429415 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 867 513 247 23 12 chr6 37088111 37088270 -112428767 - ID_B1 SINE B4 0 224 68 1 867 21 0 0 0 chr6 37089530 37089551 -112427486 + AT_rich Low_complexity Low_complexity 1 21 0 1 867 245 289 12 35 chr6 37089801 37089887 -112427150 + MER77 LTR ERVL 524 607 0 1 867 1413 109 0 0 chr6 37090207 37090399 -112426638 - B2_Mm2 SINE B2 -2 193 2 1 867 238 62 62 0 chr6 37090403 37090451 -112426586 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 1 867 332 353 92 35 chr6 37090542 37090944 -112426093 + MLT1J1 LTR MaLR 20 444 0 1 867 411 56 0 0 chr6 37091579 37091633 -112425404 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 1 867 536 151 123 0 chr6 37091782 37091888 -112425149 + B1F SINE Alu 24 142 -7 1 867 1291 237 47 15 chr6 37092505 37092843 -112424194 + MTEa LTR MaLR 30 378 -1 1 868 191 36 0 35 chr6 37094016 37094045 -112422992 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 1 868 522 0 0 0 chr6 37094369 37094427 -112422610 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 868 263 99 40 53 chr6 37094493 37094568 -112422469 + (CAGAGA)n Simple_repeat Simple_repeat 3 76 0 1 868 922 98 0 19 chr6 37095503 37095713 -112421324 + (TG)n Simple_repeat Simple_repeat 1 205 0 1 868 279 0 0 0 chr6 37095980 37096011 -112421026 + (A)n Simple_repeat Simple_repeat 1 31 0 1 868 861 103 0 0 chr6 37096282 37096408 -112420629 + (GGA)n Simple_repeat Simple_repeat 1 126 0 1 868 702 325 98 13 chr6 37096826 37097217 -112419820 + L1MA6 LINE L1 4833 5260 -883 1 868 396 0 0 0 chr6 37097217 37097261 -112419776 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 868 1170 256 75 51 chr6 37097261 37097733 -112419304 + L1MA6 LINE L1 5261 5753 -559 1 868 469 288 5 152 chr6 37097741 37097938 -112419099 + B4 SINE B4 113 280 -12 1 868 339 25 0 0 chr6 37098122 37098162 -112418875 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 868 510 305 122 51 chr6 37098761 37099251 -112417786 + L1MA6 LINE L1 5771 6295 -5 1 868 197 65 0 31 chr6 37099504 37099536 -112417501 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 868 369 0 0 0 chr6 37099668 37099709 -112417328 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 868 370 228 0 109 chr6 37100884 37101012 -112416025 + PB1D10 SINE Alu 3 116 -1 1 868 271 302 35 11 chr6 37101353 37101440 -112415597 + B1F SINE Alu 39 127 -22 1 868 475 202 0 16 chr6 37101524 37101650 -112415387 + GA-rich Low_complexity Low_complexity 2 125 0 1 868 342 0 0 0 chr6 37101674 37101712 -112415325 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 868 315 0 0 0 chr6 37103408 37103443 -112413594 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 868 234 339 45 0 chr6 37103472 37103584 -112413453 + PB1D7 SINE Alu 3 119 -1 1 868 194 220 0 17 chr6 37103605 37103665 -112413372 + GA-rich Low_complexity Low_complexity 4 62 0 1 868 458 198 120 53 chr6 37103795 37103928 -112413109 - B1F2 SINE Alu -6 143 2 1 868 22 0 0 0 chr6 37103936 37103958 -112413079 + AT_rich Low_complexity Low_complexity 1 22 0 1 868 416 238 0 0 chr6 37104336 37104416 -112412621 + ID4_ SINE ID 1 80 -3 1 868 339 85 0 0 chr6 37104433 37104480 -112412557 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 868 230 346 61 8 chr6 37104564 37104695 -112412342 + MER20B DNA MER1_type 129 266 -517 1 868 183 184 0 0 chr6 37104926 37104964 -112412073 + GA-rich Low_complexity Low_complexity 1 38 0 1 868 292 330 17 9 chr6 37105141 37105257 -112411780 - L2a LINE L2 -1 3425 3309 1 868 1717 268 47 27 chr6 37105638 37106005 -112411032 + Lx7 LINE L1 6791 7169 -527 1 868 189 0 0 0 chr6 37106005 37106026 -112411011 + (CCA)n Simple_repeat Simple_repeat 1 21 0 1 868 1717 268 47 27 chr6 37106026 37106207 -112410830 + Lx7 LINE L1 7170 7350 -346 1 868 204 40 0 0 chr6 37106447 37106472 -112410565 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 868 988 178 66 116 chr6 37106514 37106832 -112410205 + MT2B LTR ERVL 1 302 -299 1 868 7385 133 36 0 chr6 37106832 37107933 -112409104 + MERVL_2A-int LTR ERVL 4488 5628 -133 1 868 347 137 13 52 chr6 37107933 37108010 -112409027 + ORR1A3-int LTR MaLR 567 640 -1323 1 868 4549 85 7 25 chr6 37108048 37108660 -112408377 + MT2B LTR ERVL 1 601 0 1 868 670 277 85 38 chr6 37109426 37109745 -112407292 + MLT1C LTR MaLR 5 338 -129 1 868 295 259 213 0 chr6 37110324 37110432 -112406605 + B4A SINE B4 162 292 0 1 868 288 0 0 0 chr6 37110485 37110517 -112406520 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 868 645 317 57 55 chr6 37111420 37111824 -112405213 - MTD LTR MaLR -14 405 1 1 868 347 255 225 43 chr6 37112517 37112786 -112404251 + L1M4 LINE L1 1368 1757 -5147 1 868 1421 71 22 0 chr6 37112786 37112970 -112404067 + B2_Mm2 SINE B2 1 188 -7 1 868 347 313 111 48 chr6 37112970 37113258 -112403779 + L1M4 LINE L1 1758 2059 -4845 1 868 810 88 237 51 chr6 37113282 37113438 -112403599 + B2_Mm1t SINE B2 1 185 -8 1 868 273 262 40 24 chr6 37113475 37113600 -112403437 + L1M4 LINE L1 2064 2190 -5144 1 868 817 313 86 20 chr6 37113758 37114303 -112402734 + L1ME2 LINE L1 5404 5984 -180 1 868 359 310 99 0 chr6 37115070 37115212 -112401825 + Arthur1C DNA Tip100 4 159 -204 1 868 248 309 37 60 chr6 37115648 37115782 -112401255 + ORR1E LTR MaLR 249 379 0 1 868 649 274 29 19 chr6 37116015 37116223 -112400814 + Lx9 LINE L1 6749 6958 -686 1 868 286 301 34 34 chr6 37116886 37117003 -112400034 - MARNA DNA Mariner -201 385 269 1 868 2478 123 55 5 chr6 37118187 37118586 -112398451 + Lx4A LINE L1 6637 7055 -3 1 868 31 0 0 0 chr6 37118586 37118617 -112398420 + AT_rich Low_complexity Low_complexity 1 31 0 1 868 866 132 127 0 chr6 37118630 37118796 -112398241 + B2_Mm2 SINE B2 2 188 -7 1 868 222 195 24 0 chr6 37118802 37118843 -112398194 + GA-rich Low_complexity Low_complexity 2 43 0 1 868 492 189 0 40 chr6 37118872 37118971 -112398066 + ID_B1 SINE B4 130 224 0 1 868 974 232 42 42 chr6 37119289 37119595 -112397442 - ORR1E LTR MaLR -52 307 2 1 868 372 43 0 0 chr6 37120981 37121027 -112396010 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 868 1294 179 4 13 chr6 37122328 37122555 -112394482 - URR1B DNA MER1_type 0 225 1 1 868 1501 188 41 79 chr6 37122962 37123331 -112393706 - ORR1B1 LTR MaLR 0 394 40 1 868 3962 137 30 94 chr6 37123337 37124189 -112392848 - ORR1B1-int LTR MaLR 0 1963 1166 1 868 947 107 95 0 chr6 37124191 37124359 -112392678 - ORR1B1-int LTR MaLR -1779 184 1 1 868 334 178 0 0 chr6 37124359 37124427 -112392610 - ORR1B1 LTR MaLR 0 374 268 1 868 198 176 0 0 chr6 37124631 37124682 -112392355 + GA-rich Low_complexity Low_complexity 1 51 0 1 868 546 299 7 7 chr6 37124682 37124820 -112392217 - RSINE1 SINE B4 -13 152 15 1 868 25 65 0 0 chr6 37125367 37125413 -112391624 + AT_rich Low_complexity Low_complexity 1 46 0 1 868 624 107 0 0 chr6 37126647 37126759 -112390278 + (CCCTAG)n Simple_repeat Simple_repeat 2 113 0 1 868 241 375 26 13 chr6 37127341 37127495 -112389542 - L2a LINE L2 -235 3191 3036 1 868 325 314 138 9 chr6 37128777 37129008 -112388029 + Lx8 LINE L1 7158 7418 -55 1 868 677 110 9 0 chr6 37129010 37129119 -112387918 + (GA)n Simple_repeat Simple_repeat 1 110 0 1 868 372 43 0 0 chr6 37129119 37129165 -112387872 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 1 868 258 307 43 26 chr6 37129165 37129282 -112387755 + Lx8 LINE L1 7355 7473 0 1 868 288 256 10 91 chr6 37129291 37129390 -112387647 - MTEa LTR MaLR -288 91 1 1 868 471 309 41 0 chr6 37129508 37129631 -112387406 - ID_B1 SINE B4 -11 213 86 1 868 618 161 0 0 chr6 37129710 37129822 -112387215 + CT-rich Low_complexity Low_complexity 2 113 0 1 868 198 0 0 0 chr6 37130557 37130579 -112386458 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 1 868 608 277 42 16 chr6 37131581 37131772 -112385265 - ORR1E LTR MaLR 0 359 164 1 868 426 160 28 9 chr6 37131774 37131881 -112385156 + GA-rich Low_complexity Low_complexity 6 114 0 1 868 368 234 9 85 chr6 37131889 37132000 -112385037 - ORR1E LTR MaLR -271 103 3 1 868 278 244 65 8 chr6 37132769 37132893 -112384144 - Lx6 LINE L1 0 7460 7330 1 868 225 0 0 0 chr6 37132908 37132933 -112384104 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 868 246 268 71 78 chr6 37133420 37133574 -112383463 - L1ME2 LINE L1 -2 6162 6010 1 868 277 274 74 0 chr6 37134089 37134184 -112382853 + L2a LINE L2 3245 3346 -80 1 868 608 237 7 0 chr6 37134463 37134598 -112382439 - B3 SINE B2 0 216 81 1 868 582 133 34 17 chr6 37134703 37134879 -112382158 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 868 827 71 45 0 chr6 37134919 37135073 -112381964 + (CA)n Simple_repeat Simple_repeat 2 162 0 1 868 1073 226 98 98 chr6 37136218 37136586 -112380451 - MTE2b LTR MaLR -11 368 1 1 868 7556 80 20 14 chr6 37136592 37137820 -112379217 + L1_Mus3 LINE L1 5403 6637 -1 1 868 4867 203 81 23 chr6 37137873 37138972 -112378065 + Lx7 LINE L1 6534 7696 0 1 868 229 299 19 67 chr6 37139099 37139203 -112377834 + MLT1F1 LTR MaLR 2 100 -460 1 868 340 342 74 15 chr6 37139378 37139580 -112377457 + MLT1F1 LTR MaLR 346 559 -10 1 868 553 231 6 70 chr6 37140086 37140244 -112376793 - B1F SINE Alu -1 148 1 1 868 521 297 66 43 chr6 37140473 37140640 -112376397 - B3A SINE B2 0 216 51 1 868 1156 183 231 19 chr6 37140640 37140947 -112376090 - ORR1D1 LTR MaLR 0 374 3 1 868 521 301 54 18 chr6 37140947 37140990 -112376047 - B3A SINE B2 -148 50 1 1 868 1525 118 35 4 chr6 37141259 37141514 -112375523 - Lx4A LINE L1 -1 7057 6795 1 868 290 159 14 0 chr6 37141517 37141586 -112375451 + CT-rich Low_complexity Low_complexity 1 70 0 1 868 1183 93 0 6 chr6 37141589 37141761 -112375276 - B2_Mm2 SINE B2 -24 171 1 1 868 201 158 0 0 chr6 37141761 37141799 -112375238 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 868 363 242 97 39 chr6 37141812 37141915 -112375122 + RSINE1 SINE B4 53 161 -4 1 868 272 362 7 0 chr6 37142305 37142446 -112374591 + MIR SINE MIR 75 216 -46 1 868 300 301 6 89 chr6 37143115 37143294 -112373743 + RSINE1 SINE B4 2 165 0 1 868 1713 148 12 56 chr6 37143313 37143650 -112373387 + RLTRETN_Mm LTR ERVK 1 322 0 2 868 291 270 170 0 chr6 37143761 37143861 -112373176 + ID_B1 SINE B4 83 199 -25 2 868 281 282 26 0 chr6 37143807 37143885 -112373152 + B1F1 SINE Alu 68 147 -2 2 868 1099 69 14 14 chr6 37144012 37144159 -112372878 + B1_Mus1 SINE Alu 2 148 0 2 868 194 81 27 0 chr6 37144679 37144716 -112372321 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 2 868 269 387 54 25 chr6 37144716 37144957 -112372080 - MIRb SINE MIR -16 252 5 2 868 744 260 82 60 chr6 37145104 37145386 -112371651 + B4A SINE B4 5 292 0 2 868 21 36 0 0 chr6 37145460 37145488 -112371549 + AT_rich Low_complexity Low_complexity 1 28 0 2 868 198 0 0 0 chr6 37145534 37145556 -112371481 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2 868 257 279 40 61 chr6 37146170 37146269 -112370768 + MLT1A1 LTR MaLR 16 112 -296 2 868 236 306 102 22 chr6 37146377 37146514 -112370523 + MLT1A1 LTR MaLR 260 407 -1 2 868 180 77 0 0 chr6 37146582 37146608 -112370429 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 868 1290 54 0 0 chr6 37147368 37147723 -112369314 + (CA)n Simple_repeat Simple_repeat 1 355 0 2 868 242 302 16 0 chr6 37148532 37148595 -112368442 - MER2 DNA MER2_type -2 343 280 2 868 602 262 178 10 chr6 37148596 37148793 -112368244 + B4 SINE B4 58 287 -5 2 868 395 207 131 20 chr6 37148845 37148998 -112368039 - MER2 DNA MER2_type -61 284 115 2 868 415 167 0 38 chr6 37151843 37151949 -112365088 + CT-rich Low_complexity Low_complexity 1 102 0 2 868 417 257 7 12 chr6 37152244 37152369 -112364668 + B4A SINE B4 1 123 -169 2 868 225 257 129 0 chr6 37153555 37153625 -112363412 + L2a LINE L2 3348 3426 0 2 868 356 240 0 0 chr6 37153864 37153940 -112363097 + ID4 SINE ID 13 88 -64 2 868 529 176 17 34 chr6 37154691 37154867 -112362170 + CT-rich Low_complexity Low_complexity 2 174 0 2 868 189 195 0 0 chr6 37155144 37155185 -112361852 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 2 868 784 199 147 21 chr6 37155217 37155407 -112361630 + B3 SINE B2 1 214 -2 2 868 671 81 10 0 chr6 37155757 37155856 -112361181 + (TC)n Simple_repeat Simple_repeat 1 100 0 2 868 234 287 137 11 chr6 37156035 37156130 -112360907 - Cheshire DNA MER1_type -2147 273 167 2 868 397 153 0 34 chr6 37156648 37156706 -112360331 + polypurine Low_complexity Low_complexity 2 58 0 2 868 1368 67 0 0 chr6 37156706 37156886 -112360151 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 868 397 153 0 34 chr6 37156886 37156915 -112360122 + polypurine Low_complexity Low_complexity 59 86 0 2 868 1620 33 0 0 chr6 37156916 37157636 -112359401 + (GAA)n Simple_repeat Simple_repeat 1 720 0 2 868 249 307 0 13 chr6 37157966 37158042 -112358995 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 868 507 144 0 0 chr6 37158505 37158616 -112358421 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 2 868 445 229 23 23 chr6 37158901 37159163 -112357874 + GA-rich Low_complexity Low_complexity 1 262 0 2 868 294 371 16 41 chr6 37160764 37160958 -112356079 + MLT1J-int LTR MaLR 749 937 -450 2 868 569 27 27 0 chr6 37160969 37161043 -112355994 + (TCCCC)n Simple_repeat Simple_repeat 3 78 0 2 868 23 0 0 0 chr6 37162168 37162191 -112354846 + AT_rich Low_complexity Low_complexity 1 23 0 2 868 783 225 147 4 chr6 37162461 37162706 -112354331 + B4 SINE B4 1 280 -12 2 868 465 62 0 0 chr6 37162732 37162797 -112354240 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 868 708 12 0 0 chr6 37163279 37163360 -112353677 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 868 647 286 0 0 chr6 37163935 37164075 -112352962 + RSINE1 SINE B4 2 141 -24 2 868 746 152 15 0 chr6 37164755 37164887 -112352150 - B1_Mus2 SINE Alu 0 147 14 2 868 234 298 57 66 chr6 37164799 37164921 -112352116 - MT2B LTR ERVL -344 257 137 2 868 310 333 26 7 chr6 37167584 37167735 -112349302 + MIR SINE MIR 53 206 -56 2 868 313 317 112 83 chr6 37170709 37171094 -112345943 + MLT1A1 LTR MaLR 1 396 -12 2 868 333 350 85 36 chr6 37171383 37171824 -112345213 - L3 LINE CR1 -376 4113 3649 2 868 858 106 0 0 chr6 37171824 37171965 -112345072 + (CA)n Simple_repeat Simple_repeat 2 142 0 2 868 333 350 85 36 chr6 37171965 37172027 -112345010 - L3 LINE CR1 -841 3648 3585 2 868 665 299 134 0 chr6 37173468 37173722 -112343315 + B4A SINE B4 2 289 -3 2 868 1136 48 14 0 chr6 37173997 37174143 -112342894 + B1_Mus1 SINE Alu 1 148 0 2 868 924 98 0 0 chr6 37174368 37174501 -112342536 + (GAAA)n Simple_repeat Simple_repeat 3 135 0 2 868 427 206 41 10 chr6 37174572 37174670 -112342367 + PB1D10 SINE Alu 10 110 -7 2 868 281 340 8 107 chr6 37174679 37174801 -112342236 + PB1D7 SINE Alu 1 110 -10 2 868 203 194 0 0 chr6 37175957 37175993 -112341044 + A-rich Low_complexity Low_complexity 1 36 0 2 868 298 91 18 18 chr6 37176362 37176418 -112340619 + (TAA)n Simple_repeat Simple_repeat 2 57 0 2 868 252 271 0 0 chr6 37176421 37176480 -112340557 + BC1_Mm scRNA scRNA 2 60 -92 2 868 321 89 0 0 chr6 37176498 37176543 -112340494 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 868 683 226 65 0 chr6 37176898 37177047 -112339990 + B3 SINE B2 4 163 -53 2 868 330 87 0 0 chr6 37177047 37177093 -112339944 + (CATA)n Simple_repeat Simple_repeat 1 46 0 2 868 683 226 65 0 chr6 37177093 37177111 -112339926 + B3 SINE B2 164 181 -35 2 868 1368 73 0 0 chr6 37177113 37177331 -112339706 + (CATA)n Simple_repeat Simple_repeat 1 218 0 2 868 426 286 18 18 chr6 37177453 37177567 -112339470 - PB1D10 SINE Alu -3 114 1 2 868 599 286 0 0 chr6 37178140 37178280 -112338757 + B3A SINE B2 5 144 -54 2 868 522 31 0 0 chr6 37178285 37178349 -112338688 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 868 712 185 15 15 chr6 37179318 37179455 -112337582 + B1F SINE Alu 3 139 -10 2 868 216 0 0 0 chr6 37180278 37180302 -112336735 + (A)n Simple_repeat Simple_repeat 1 24 0 2 868 442 243 133 21 chr6 37180302 37180430 -112336607 + RSINE1 SINE B4 1 145 -20 2 868 255 31 0 0 chr6 37180430 37180462 -112336575 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 868 442 243 133 21 chr6 37180462 37180476 -112336561 + RSINE1 SINE B4 146 159 -6 2 868 618 14 0 0 chr6 37180943 37181014 -112336023 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 868 818 220 35 5 chr6 37182305 37182506 -112334531 + B3 SINE B2 1 207 -9 2 868 547 249 86 6 chr6 37182536 37182710 -112334327 - B3A SINE B2 -9 189 2 2 868 3323 206 55 31 chr6 37183485 37184217 -112332820 + RMER1B Other Other 318 1066 0 2 868 1371 149 14 5 chr6 37184233 37184456 -112332581 + URR1B DNA MER1_type 1 225 0 2 868 307 252 270 0 chr6 37184522 37184633 -112332404 + B1F SINE Alu 1 141 -8 2 868 301 203 34 0 chr6 37184877 37184936 -112332101 + ORR1D1 LTR MaLR 103 163 -211 2 868 4197 174 56 47 chr6 37184997 37185897 -112331140 + RMER13B LTR ERVK 1 908 0 2 868 361 286 100 42 chr6 37186261 37186451 -112330586 - B4A SINE B4 -6 286 86 2 868 828 142 23 85 chr6 37186601 37186778 -112330259 - RMER1B Other Other 0 1066 901 2 868 1414 201 105 65 chr6 37186788 37187195 -112329842 - RMER1B Other Other -305 761 14 2 868 354 235 0 0 chr6 37187505 37187607 -112329430 + (CA)n Simple_repeat Simple_repeat 1 102 0 2 868 389 317 148 81 chr6 37187855 37188126 -112328911 + B4A SINE B4 4 292 0 2 868 298 211 57 114 chr6 37188331 37188454 -112328583 + MLT1A1 LTR MaLR 291 406 -2 2 868 655 284 75 20 chr6 37190494 37190749 -112326288 + B4A SINE B4 3 271 -21 2 868 230 42 83 0 chr6 37190767 37190815 -112326222 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 868 1060 240 109 13 chr6 37190874 37191178 -112325859 - MTD LTR MaLR -44 375 43 2 868 588 310 47 0 chr6 37192882 37193095 -112323942 - MER58A DNA MER1_type 0 224 2 2 868 659 306 70 15 chr6 37193310 37193569 -112323468 + B4A SINE B4 4 276 -16 2 868 195 100 0 0 chr6 37193629 37193659 -112323378 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 868 191 219 92 58 chr6 37193904 37193991 -112323046 + MIR3 SINE MIR 10 99 -109 2 868 229 312 16 0 chr6 37195759 37195823 -112321214 - L2b LINE L2 0 3375 3311 2 868 343 243 17 70 chr6 37195893 37196008 -112321029 - MIR SINE MIR -7 255 147 2 868 700 210 28 7 chr6 37196148 37196292 -112320745 + RSINE1 SINE B4 2 148 -17 2 868 635 290 12 17 chr6 37196785 37196957 -112320080 - MTE2b LTR MaLR -63 316 146 2 868 578 294 42 23 chr6 37197154 37197370 -112319667 - RMER15 LTR ERVL -2 573 354 2 868 270 188 0 0 chr6 37197589 37197637 -112319400 + MTEa LTR MaLR 332 379 0 2 868 2613 289 58 5 chr6 37197917 37198769 -112318268 + Lx8 LINE L1 6377 7273 -200 2 868 26 0 0 0 chr6 37198908 37198934 -112318103 + AT_rich Low_complexity Low_complexity 1 26 0 2 868 829 235 68 5 chr6 37198962 37199184 -112317853 + B4A SINE B4 53 288 -4 2 868 220 200 0 0 chr6 37199219 37199264 -112317773 + GA-rich Low_complexity Low_complexity 1 45 0 2 868 264 280 13 26 chr6 37199269 37199346 -112317691 + L1MB7 LINE L1 4039 4114 -2032 2 868 1099 266 71 8 chr6 37199362 37199744 -112317293 + L1MB7 LINE L1 5779 6184 0 2 868 1049 239 107 25 chr6 37199883 37200261 -112316776 - MTD LTR MaLR -14 405 10 2 868 197 0 71 0 chr6 37200621 37200649 -112316388 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 2 868 819 252 9 60 chr6 37200650 37200882 -112316155 - ID_B1 SINE B4 -3 221 2 2 868 212 143 0 23 chr6 37201560 37201603 -112315434 + CT-rich Low_complexity Low_complexity 6 47 0 2 868 233 220 0 20 chr6 37201892 37201943 -112315094 + GA-rich Low_complexity Low_complexity 1 50 0 2 868 185 94 31 0 chr6 37202143 37202175 -112314862 + (CAT)n Simple_repeat Simple_repeat 2 34 0 2 868 622 160 69 0 chr6 37203325 37203456 -112313581 + B3 SINE B2 72 211 -5 2 868 188 192 111 37 chr6 37204481 37204535 -112312502 + L2b LINE L2 3290 3347 -28 3 868 611 147 335 74 chr6 37204954 37205130 -112311907 + URR1A DNA MER1_type 5 226 0 3 868 437 269 28 0 chr6 37205316 37205424 -112311613 + PB1D10 SINE Alu 2 112 -5 3 868 212 288 86 12 chr6 37205593 37205674 -112311363 - RSINE1 SINE B4 0 165 79 3 868 22 0 0 0 chr6 37206126 37206148 -112310889 + AT_rich Low_complexity Low_complexity 1 22 0 3 868 1212 92 35 0 chr6 37206731 37206904 -112310133 + B2_Mm1t SINE B2 1 179 -14 3 868 401 147 205 49 chr6 37206955 37207077 -112309960 + B2_Mm2 SINE B2 47 187 -8 3 868 1166 83 0 0 chr6 37207088 37207233 -112309804 + B1_Mm SINE Alu 1 145 -2 3 868 300 302 39 23 chr6 37207737 37207866 -112309171 - MIRb SINE MIR -111 157 27 3 868 3517 82 4 0 chr6 37208096 37208562 -112308475 + Lx2A LINE L1 6529 6996 -12 3 868 396 103 0 0 chr6 37208562 37208620 -112308417 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 868 316 315 73 47 chr6 37209180 37209330 -112307707 - MER5A1 DNA MER1_type -7 159 6 3 868 504 0 0 0 chr6 37209487 37209543 -112307494 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 868 211 382 0 0 chr6 37209958 37210034 -112307003 - MIRb SINE MIR -8 260 185 3 868 1710 225 5 92 chr6 37210292 37210663 -112306374 - MTD LTR MaLR 0 419 83 3 868 3044 130 59 36 chr6 37210663 37210779 -112306258 - Lx4A LINE L1 -3 7055 6928 3 868 293 0 0 26 chr6 37210779 37210817 -112306220 + (CCCCCA)n Simple_repeat Simple_repeat 3 39 0 3 868 3044 130 59 36 chr6 37210817 37211227 -112305810 - Lx4A LINE L1 -131 6927 6518 3 868 1710 225 5 92 chr6 37211227 37211301 -112305736 - MTD LTR MaLR -337 82 13 3 868 3239 144 23 14 chr6 37211687 37212250 -112304787 - RLTR20D LTR ERVK 0 568 1 3 868 193 333 0 0 chr6 37213053 37213116 -112303921 - L2a LINE L2 -3 3423 3361 3 868 748 251 12 6 chr6 37213830 37214002 -112303035 + B3A SINE B2 2 174 -24 3 868 2366 241 55 76 chr6 37214231 37215166 -112301871 - RMER1A Other Other 0 1030 116 3 868 342 0 0 0 chr6 37215190 37215228 -112301809 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 868 249 33 0 0 chr6 37215228 37215257 -112301780 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 868 705 311 121 4 chr6 37215611 37215892 -112301145 + Tigger7 DNA MER2_type 16 329 -2162 3 868 295 286 36 0 chr6 37215908 37215992 -112301045 + Tigger7 DNA MER2_type 978 1064 -1427 3 868 235 311 0 0 chr6 37216171 37216232 -112300805 - MIRc SINE MIR -117 151 91 3 868 244 328 78 0 chr6 37216391 37216507 -112300530 + MIRb SINE MIR 122 246 -22 3 868 355 365 57 0 chr6 37217131 37217323 -112299714 - MIR SINE MIR -39 223 21 3 868 435 95 0 0 chr6 37218156 37218230 -112298807 + (T)n Simple_repeat Simple_repeat 1 74 0 3 868 231 88 0 0 chr6 37220804 37220838 -112296199 + (CTTA)n Simple_repeat Simple_repeat 3 36 0 3 868 3973 188 46 22 chr6 37220838 37221633 -112295404 - RMER1A Other Other -22 1008 195 3 868 495 0 0 0 chr6 37221635 37221690 -112295347 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 868 371 296 84 7 chr6 37222804 37222947 -112294090 + MIR SINE MIR 64 217 -45 3 868 725 282 64 5 chr6 37223736 37223939 -112293098 - ID_B1 SINE B4 -8 216 2 3 108 405 250 74 16 chr6 37224349 37224471 -112292566 + ID_B1 SINE B4 92 220 -4 3 869 235 366 0 12 chr6 37224485 37224568 -112292469 + ID4_ SINE ID 2 83 0 3 869 474 18 0 0 chr6 37225326 37225381 -112291656 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 869 279 114 0 0 chr6 37226744 37226788 -112290249 + (GGGGA)n Simple_repeat Simple_repeat 3 46 0 3 869 207 0 0 0 chr6 37227905 37227928 -112289109 + (A)n Simple_repeat Simple_repeat 1 23 0 3 869 354 176 152 8 chr6 37228242 37228374 -112288663 + Lx5 LINE L1 6892 7042 -8 3 869 625 171 26 97 chr6 37228605 37228760 -112288277 + B1_Mur4 SINE Alu 6 149 -1 3 869 270 283 57 82 chr6 37229165 37229323 -112287714 + HAL1 LINE L1 1553 1706 -801 3 869 240 59 0 0 chr6 37229450 37229484 -112287553 + (TAAAA)n Simple_repeat Simple_repeat 4 37 0 3 869 316 182 189 22 chr6 37229697 37229787 -112287250 + PB1D10 SINE Alu 5 109 -8 3 869 656 253 0 30 chr6 37229799 37229999 -112287038 - BGLII_B LTR ERVK -243 198 5 3 869 305 309 0 0 chr6 37230388 37230469 -112286568 - ID4_ SINE ID 0 83 3 3 869 194 246 31 47 chr6 37231672 37231736 -112285301 + L2 LINE L2 2825 2887 -532 3 869 441 0 0 0 chr6 37233003 37233052 -112283985 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 869 310 368 52 0 chr6 37233744 37233937 -112283100 + MER3 DNA MER1_type 7 209 0 3 869 758 179 52 29 chr6 37234144 37234317 -112282720 - ORR1D2 LTR MaLR -193 177 1 3 869 546 152 406 12 chr6 37234384 37234544 -112282493 - URR1B DNA MER1_type -2 223 1 3 869 568 235 39 32 chr6 37235573 37235727 -112281310 + B3A SINE B2 44 198 0 3 869 225 0 0 0 chr6 37235928 37235953 -112281084 + (TTAG)n Simple_repeat Simple_repeat 3 27 0 3 869 266 333 34 61 chr6 37236420 37236567 -112280470 + MIR SINE MIR 110 252 -10 3 869 477 104 0 0 chr6 37237790 37237867 -112279170 + (TCCC)n Simple_repeat Simple_repeat 1 77 0 3 869 1159 70 0 0 chr6 37239498 37239640 -112277397 + B1_Mus1 SINE Alu 2 143 -5 3 869 348 24 0 0 chr6 37239642 37239683 -112277354 + (GGAGAA)n Simple_repeat Simple_repeat 3 43 0 3 869 336 346 124 43 chr6 37239979 37240278 -112276759 + MLT1A0 LTR MaLR 34 356 -18 3 869 430 269 91 55 chr6 37240719 37240884 -112276153 + B4A SINE B4 1 171 -121 3 869 406 0 37 0 chr6 37241055 37241109 -112275928 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 869 191 370 32 32 chr6 37241942 37242129 -112274908 - MIR SINE MIR -62 200 14 3 869 186 167 0 0 chr6 37242736 37242772 -112274265 + (CACG)n Simple_repeat Simple_repeat 1 36 0 3 869 190 270 32 22 chr6 37243334 37243426 -112273611 - MIRc SINE MIR -67 195 97 3 869 422 296 187 74 chr6 37244660 37244970 -112272067 + MER2 DNA MER2_type 1 345 0 3 869 728 174 19 83 chr6 37245517 37245674 -112271363 + B1_Mur3 SINE Alu 3 149 0 3 869 339 191 0 0 chr6 37245674 37245742 -112271295 + A-rich Low_complexity Low_complexity 1 68 0 3 869 381 22 0 0 chr6 37245778 37245824 -112271213 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 869 342 0 0 0 chr6 37245824 37245862 -112271175 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 869 543 265 87 40 chr6 37246073 37246348 -112270689 + B4A SINE B4 5 292 0 3 869 183 129 0 0 chr6 37246381 37246412 -112270625 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 869 222 91 0 0 chr6 37247047 37247080 -112269957 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 869 229 164 36 18 chr6 37248839 37248895 -112268142 + G-rich Low_complexity Low_complexity 2 58 0 3 869 513 0 0 0 chr6 37249413 37249470 -112267567 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 869 209 292 8 32 chr6 37249658 37249782 -112267255 + (CCG)n Simple_repeat Simple_repeat 1 121 0 3 869 1146 72 0 0 chr6 37251218 37251371 -112265666 + (CA)n Simple_repeat Simple_repeat 2 154 0 3 869 224 292 28 0 chr6 37252284 37252356 -112264681 + B1_Mur2 SINE Alu 76 149 0 3 869 25 51 0 0 chr6 37252540 37252579 -112264458 + AT_rich Low_complexity Low_complexity 1 39 0 3 869 476 182 23 8 chr6 37253656 37253789 -112263248 + GA-rich Low_complexity Low_complexity 3 137 0 3 869 222 37 0 0 chr6 37253787 37253814 -112263223 + (TGG)n Simple_repeat Simple_repeat 2 28 0 3 869 232 238 0 23 chr6 37254162 37254248 -112262789 + G-rich Low_complexity Low_complexity 5 88 0 3 869 206 237 0 0 chr6 37254251 37254289 -112262748 + polypurine Low_complexity Low_complexity 4 41 0 3 869 987 115 0 0 chr6 37254437 37254594 -112262443 + (CTATA)n Simple_repeat Simple_repeat 2 158 0 3 869 633 334 72 65 chr6 37254649 37254830 -112262207 - MER119 DNA MER1_type -41 542 359 3 869 1089 234 9 5 chr6 37254830 37255040 -112261997 - B3 SINE B2 -4 212 2 3 869 633 334 72 65 chr6 37255040 37255396 -112261641 - MER119 DNA MER1_type -225 358 1 3 869 416 263 18 66 chr6 37255423 37255590 -112261447 - MER119 DNA MER1_type -42 541 383 3 869 1423 188 169 8 chr6 37255631 37255985 -112261052 - MTD LTR MaLR -8 411 1 3 869 452 198 9 19 chr6 37255985 37256093 -112260944 - MTD-int LTR MaLR 0 1258 1152 3 869 441 0 0 0 chr6 37257069 37257118 -112259919 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 869 273 29 0 0 chr6 37257525 37257559 -112259478 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 3 869 766 199 7 0 chr6 37257898 37258034 -112259003 + B1_Mus1 SINE Alu 5 141 -7 3 869 457 286 26 13 chr6 37258778 37258934 -112258103 - MIR3 SINE MIR -10 198 41 3 869 300 278 36 27 chr6 37259155 37259266 -112257771 + L1M4 LINE L1 4662 4773 -1373 3 869 270 116 23 0 chr6 37259503 37259546 -112257491 + Lx8 LINE L1 6756 6799 -674 3 869 827 299 65 27 chr6 37259907 37260275 -112256762 + L1MB2 LINE L1 5571 5952 -219 3 869 260 186 17 0 chr6 37263392 37263451 -112253586 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 869 21 0 0 0 chr6 37263465 37263486 -112253551 + AT_rich Low_complexity Low_complexity 1 21 0 3 869 233 287 45 22 chr6 37264058 37264147 -112252890 + Lx8 LINE L1 7034 7124 -349 3 869 516 122 0 0 chr6 37264564 37264646 -112252391 + (GGGA)n Simple_repeat Simple_repeat 3 84 0 3 869 258 294 0 0 chr6 37264876 37264944 -112252093 - BC1_Mm scRNA scRNA -71 81 14 3 869 200 143 0 23 chr6 37264988 37265031 -112252006 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 869 286 346 28 18 chr6 37265095 37265204 -112251833 + MER5B DNA MER1_type 69 178 0 3 869 302 313 100 20 chr6 37265318 37265468 -112251569 - MIR SINE MIR -83 179 18 3 869 610 252 39 0 chr6 37266368 37266495 -112250542 + RSINE1 SINE B4 3 134 -31 3 869 1092 16 0 0 chr6 37266714 37266840 -112250197 + (TC)n Simple_repeat Simple_repeat 1 126 0 4 869 241 316 65 14 chr6 37267828 37267966 -112249071 - L1MEe LINE L1 -4204 650 506 4 869 278 232 0 0 chr6 37267969 37268038 -112248999 - MER82 DNA MER2_type 0 653 585 4 869 241 325 24 24 chr6 37269029 37269155 -112247882 + HAL1 LINE L1 1512 1637 -870 4 869 473 269 43 32 chr6 37269322 37269510 -112247527 + B2_Mm2 SINE B2 3 192 -3 4 869 2694 268 92 19 chr6 37269864 37270707 -112246330 + Lx8 LINE L1 6341 7245 -228 4 869 239 157 0 19 chr6 37270739 37270791 -112246246 + Lx4A LINE L1 7008 7058 0 4 869 579 29 0 0 chr6 37270995 37271064 -112245973 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 4 869 228 296 14 0 chr6 37271064 37271135 -112245902 + HAL1 LINE L1 2042 2113 -394 4 869 233 77 51 0 chr6 37271603 37271642 -112245395 + (TTTC)n Simple_repeat Simple_repeat 1 41 0 4 869 1034 37 0 0 chr6 37271642 37271778 -112245259 - B1_Mus1 SINE Alu -1 147 12 4 869 207 100 0 0 chr6 37271871 37271901 -112245136 + (A)n Simple_repeat Simple_repeat 1 30 0 4 869 344 281 65 16 chr6 37272818 37272941 -112244096 - ID_B1 SINE B4 -16 208 80 4 869 1310 71 60 0 chr6 37272977 37273159 -112243878 + B2_Mm2 SINE B2 1 193 -2 4 869 225 250 19 0 chr6 37273534 37273586 -112243451 - ID SINE ID -169 55 3 4 869 485 142 56 11 chr6 37273801 37274086 -112242951 + (CA)n Simple_repeat Simple_repeat 1 297 0 4 869 493 158 55 11 chr6 37274142 37274614 -112242423 + (CA)n Simple_repeat Simple_repeat 1 493 0 4 869 231 352 0 54 chr6 37274997 37275108 -112241929 - MER74A LTR ERVL 0 558 454 4 869 859 237 83 36 chr6 37275153 37275455 -112241582 - MER74A LTR ERVL -223 335 20 4 869 222 37 0 0 chr6 37275523 37275550 -112241487 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 869 377 307 0 9 chr6 37275550 37275665 -112241372 - Lx7 LINE L1 -1954 5742 5629 4 869 883 254 35 105 chr6 37276210 37276583 -112240454 + MTEb LTR MaLR 1 347 -32 4 869 344 117 0 91 chr6 37277039 37277105 -112239932 + HAL1-3A_ME LINE L1 1958 2017 -841 4 869 401 81 0 16 chr6 37277140 37277203 -112239834 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 869 24 32 0 0 chr6 37277349 37277380 -112239657 + AT_rich Low_complexity Low_complexity 1 31 0 4 869 405 0 0 0 chr6 37278479 37278524 -112238513 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 869 186 0 88 0 chr6 37280539 37280573 -112236464 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 869 370 36 36 0 chr6 37280889 37280945 -112236092 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 869 180 0 0 0 chr6 37281164 37281184 -112235853 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 869 217 228 0 17 chr6 37281310 37281368 -112235669 + GA-rich Low_complexity Low_complexity 2 58 0 4 869 571 273 0 48 chr6 37283950 37284096 -112232941 - ID_B1 SINE B4 -5 219 81 4 869 1045 293 67 27 chr6 37286649 37286979 -112230058 + MLT1A0 LTR MaLR 23 365 0 4 869 204 222 0 22 chr6 37287164 37287210 -112229827 + GA-rich Low_complexity Low_complexity 3 47 0 4 869 279 362 73 12 chr6 37287544 37287709 -112229328 + Tigger10 DNA Tigger 581 755 -1088 4 869 29 0 0 0 chr6 37288647 37288676 -112228361 + AT_rich Low_complexity Low_complexity 1 29 0 4 869 236 260 10 59 chr6 37289433 37289535 -112227502 + (TATG)n Simple_repeat Simple_repeat 3 99 0 4 869 237 280 23 11 chr6 37289535 37289712 -112227325 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 4 869 261 278 38 44 chr6 37289712 37289870 -112227167 + RLTR22_Mur LTR ERVK 1307 1463 -385 4 869 225 316 0 0 chr6 37289879 37290015 -112227022 + (TA)n Simple_repeat Simple_repeat 2 137 0 4 869 631 211 11 6 chr6 37289982 37290158 -112226879 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 4 869 1780 216 97 25 chr6 37292082 37292529 -112224508 + RLTR20A LTR ERVK 5 463 -114 4 869 936 26 0 0 chr6 37292529 37292644 -112224393 + (TG)n Simple_repeat Simple_repeat 2 116 0 4 869 1780 208 101 22 chr6 37292644 37292722 -112224315 + RLTR20A LTR ERVK 452 539 -2 4 869 344 200 11 0 chr6 37293016 37293106 -112223931 + (TA)n Simple_repeat Simple_repeat 1 91 0 4 869 547 103 158 40 chr6 37293110 37293262 -112223775 + MYSERV16_I-int LTR ERVK 2149 2318 -8 4 869 1847 202 60 48 chr6 37293273 37293756 -112223281 + RLTR20A1 LTR ERVK 1 489 -62 4 869 687 84 0 0 chr6 37293857 37293952 -112223085 + (CA)n Simple_repeat Simple_repeat 1 95 0 4 869 1069 233 9 0 chr6 37294397 37294607 -112222430 - B3 SINE B2 -1 215 4 4 869 915 143 20 13 chr6 37295184 37295333 -112221704 - B1_Mur4 SINE Alu 0 150 1 4 869 1106 69 0 20 chr6 37295655 37295803 -112221234 - B1_Mm SINE Alu 0 147 3 4 869 237 200 30 104 chr6 37295803 37295842 -112221195 - MT2B2 LTR ERVL -325 259 226 4 869 227 291 132 35 chr6 37295806 37295920 -112221117 - MER115 DNA Tip100 -177 516 392 4 869 986 240 179 52 chr6 37295965 37296290 -112220747 + MTEa LTR MaLR 8 373 -6 4 869 509 331 129 14 chr6 37296335 37296629 -112220408 + LTR40b LTR ERVL 53 380 -82 4 869 360 0 0 0 chr6 37296735 37296775 -112220262 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 869 551 15 15 0 chr6 37296775 37296842 -112220195 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 869 458 363 97 10 chr6 37296862 37297057 -112219980 - MER115 DNA Tip100 -392 301 90 4 869 252 323 78 0 chr6 37298716 37298883 -112218154 + L1MA9 LINE L1 6131 6310 -2 4 869 2551 40 0 0 chr6 37298889 37299188 -112217849 + L1Md_A LINE L1 5288 5586 -297 4 869 8775 25 0 0 chr6 37299188 37300184 -112216853 + L1Md_A LINE L1 5587 6582 0 4 869 258 105 0 0 chr6 37300391 37300429 -112216608 + (A)n Simple_repeat Simple_repeat 1 38 0 4 869 246 62 0 0 chr6 37300634 37300666 -112216371 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 869 321 89 0 0 chr6 37300741 37300786 -112216251 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 869 736 233 33 0 chr6 37300791 37300941 -112216096 - B4 SINE B4 -42 250 96 4 869 320 311 94 83 chr6 37300943 37301220 -112215817 + B4A SINE B4 13 292 0 4 869 198 0 0 0 chr6 37301674 37301696 -112215341 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 4 869 290 303 0 62 chr6 37301705 37301786 -112215251 + ID_B1 SINE B4 84 159 -65 4 869 222 324 173 0 chr6 37302822 37302961 -112214076 + MIR SINE MIR 82 244 -18 4 869 331 273 0 25 chr6 37303224 37303303 -112213734 - ID4 SINE ID -5 78 2 4 869 351 0 0 0 chr6 37305293 37305332 -112211705 + (A)n Simple_repeat Simple_repeat 1 39 0 4 869 519 101 0 0 chr6 37306009 37306088 -112210949 + (TATG)n Simple_repeat Simple_repeat 1 79 0 4 869 634 314 137 16 chr6 37306103 37306359 -112210678 - B4A SINE B4 -1 291 5 4 869 465 299 13 39 chr6 37308230 37308383 -112208654 + MLT1A1 LTR MaLR 259 407 -1 4 869 819 128 0 0 chr6 37308799 37309082 -112207955 + (GA)n Simple_repeat Simple_repeat 1 283 0 4 869 886 254 29 8 chr6 37309223 37309459 -112207578 - ID_B1 SINE B4 -41 251 9 4 869 4327 81 20 5 chr6 37309885 37310469 -112206568 + L1_Mus3 LINE L1 6034 6626 -12 4 869 441 0 0 0 chr6 37310469 37310518 -112206519 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 869 508 251 177 23 chr6 37312853 37313028 -112204009 + B3 SINE B2 2 203 -13 4 869 245 294 0 0 chr6 37313028 37313079 -112203958 + (CACG)n Simple_repeat Simple_repeat 1 51 0 4 869 1065 230 79 45 chr6 37314398 37314753 -112202284 + ORR1D2 LTR MaLR 3 369 -1 4 869 751 92 233 0 chr6 37314850 37314970 -112202067 + B1_Mus1 SINE Alu 1 148 0 4 869 738 0 0 0 chr6 37315137 37315219 -112201818 + (TC)n Simple_repeat Simple_repeat 1 82 0 4 869 800 270 41 14 chr6 37316733 37316951 -112200086 - MTE2b LTR MaLR -155 224 1 4 869 225 0 0 0 chr6 37317193 37317218 -112199819 + (CAAGC)n Simple_repeat Simple_repeat 3 27 0 4 869 644 289 119 40 chr6 37317366 37317568 -112199469 + ID_B1 SINE B4 1 218 -6 4 869 494 308 0 30 chr6 37317668 37317802 -112199235 + RSINE1 SINE B4 2 131 -34 4 869 720 209 158 6 chr6 37319054 37319237 -112197800 + B3 SINE B2 5 215 -1 4 869 361 325 92 7 chr6 37319405 37319557 -112197480 - MIR SINE MIR -21 241 77 4 869 506 337 40 15 chr6 37319999 37320201 -112196836 - MIR SINE MIR 0 262 56 4 869 1249 48 0 0 chr6 37321273 37321419 -112195618 - B1_Mus2 SINE Alu -1 146 1 4 869 769 289 18 67 chr6 37321436 37321659 -112195378 - B3A SINE B2 0 216 5 4 869 1734 232 93 36 chr6 37321920 37322740 -112194297 + RCHARR1 DNA MER1_type 39 972 -2 4 869 227 314 27 41 chr6 37323575 37323648 -112193389 + B3 SINE B2 13 84 -132 4 869 399 21 0 0 chr6 37323713 37323761 -112193276 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 869 267 330 18 0 chr6 37323946 37324055 -112192982 + G-rich Low_complexity Low_complexity 4 114 0 4 869 306 296 94 90 chr6 37325715 37325982 -112191055 + L2c LINE L2 3115 3382 -5 4 869 706 282 12 0 chr6 37326787 37326950 -112190087 + RSINE1 SINE B4 1 165 0 4 869 232 288 88 26 chr6 37327080 37327194 -112189843 - MIR SINE MIR -61 201 81 4 869 322 327 66 30 chr6 37327678 37327845 -112189192 + MLT1F1 LTR MaLR 397 569 0 4 869 534 224 59 14 chr6 37328119 37328260 -112188777 + Tigger7 DNA MER2_type 1 153 -186 4 869 201 39 0 0 chr6 37329679 37329705 -112187332 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 869 823 256 123 8 chr6 37330153 37330413 -112186624 + B4 SINE B4 1 290 -2 4 869 1927 79 114 16 chr6 37331340 37331632 -112185405 + RMER6A LTR ERVK 1 322 -434 4 869 568 38 25 0 chr6 37331632 37331711 -112185326 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 869 1927 79 114 16 chr6 37331711 37331726 -112185311 + RMER6A LTR ERVK 323 338 -418 4 869 387 41 0 0 chr6 37331970 37332019 -112185018 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 869 551 288 103 94 chr6 37334696 37334899 -112182138 + B4A SINE B4 88 292 0 4 869 180 152 0 0 chr6 37335290 37335323 -112181714 + (CATG)n Simple_repeat Simple_repeat 4 36 0 4 869 396 0 0 0 chr6 37336351 37336395 -112180642 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 4 869 21 36 0 0 chr6 37336475 37336503 -112180534 + AT_rich Low_complexity Low_complexity 1 28 0 5 869 361 313 148 13 chr6 37336793 37337023 -112180014 + L1MC1 LINE L1 6050 6310 -23 5 869 486 0 0 0 chr6 37337255 37337309 -112179728 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 869 180 0 0 0 chr6 37338491 37338511 -112178526 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 869 801 319 59 50 chr6 37339322 37339645 -112177392 + MER2 DNA MER2_type 20 345 0 5 869 248 275 71 0 chr6 37339770 37339848 -112177189 - PB1D9 SINE Alu -50 100 17 5 869 401 220 10 257 chr6 37339790 37339992 -112177045 - ID_B1 SINE B4 -69 155 4 5 869 1064 179 21 16 chr6 37340231 37340424 -112176613 - B3 SINE B2 -17 199 6 5 869 203 342 77 19 chr6 37341109 37341265 -112175772 + MIRc SINE MIR 13 176 -32 5 869 657 261 141 21 chr6 37341930 37342122 -112174915 + ID_B1 SINE B4 2 216 -8 5 869 252 86 0 0 chr6 37342123 37342158 -112174879 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 869 298 102 24 71 chr6 37343114 37343241 -112173796 + (CAAA)n Simple_repeat Simple_repeat 1 121 0 5 869 495 246 175 74 chr6 37343897 37344108 -112172929 + MLT1E1A LTR MaLR 1 224 -456 5 869 2046 137 148 19 chr6 37344108 37344481 -112172556 + MTC LTR MaLR 1 421 0 5 869 495 246 175 74 chr6 37344481 37344514 -112172523 + MLT1E1A LTR MaLR 225 258 -422 5 869 288 0 0 0 chr6 37344514 37344546 -112172491 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 5 869 495 246 175 74 chr6 37344546 37344585 -112172452 + MLT1E1A LTR MaLR 259 313 -367 5 869 287 297 86 7 chr6 37344642 37344781 -112172256 + MLT1E1A LTR MaLR 479 628 -25 5 869 515 297 12 19 chr6 37344812 37344955 -112172082 + MLT1A LTR MaLR 19 160 -214 5 869 734 277 115 82 chr6 37344955 37345234 -112171803 + B4 SINE B4 1 288 -4 5 869 263 152 51 0 chr6 37345265 37345344 -112171693 + CT-rich Low_complexity Low_complexity 2 84 0 5 869 396 315 39 52 chr6 37345454 37345608 -112171429 - RSINE1 SINE B4 -12 153 2 5 869 263 346 85 21 chr6 37345608 37345793 -112171244 + MLT1A LTR MaLR 178 374 0 5 869 326 268 0 0 chr6 37347628 37347699 -112169338 + ID4_ SINE ID 2 72 -11 5 869 278 394 74 11 chr6 37348317 37348507 -112168530 - MIRb SINE MIR -60 208 7 5 869 230 362 133 0 chr6 37349028 37349133 -112167904 - MER82 DNA MER2_type -12 641 523 5 869 1036 336 64 5 chr6 37349182 37349571 -112167466 - MER82 DNA MER2_type -203 450 39 5 869 221 163 0 20 chr6 37350694 37350744 -112166293 + GA-rich Low_complexity Low_complexity 4 52 0 5 869 258 105 0 0 chr6 37350962 37351000 -112166037 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 869 21 0 0 0 chr6 37351550 37351571 -112165466 + GC_rich Low_complexity Low_complexity 1 21 0 5 869 219 328 75 0 chr6 37351646 37351713 -112165324 + ID4 SINE ID 12 83 0 5 869 280 191 11 11 chr6 37351715 37351805 -112165232 + GA-rich Low_complexity Low_complexity 2 91 0 5 869 640 272 52 19 chr6 37352238 37352448 -112164589 - ID_B1 SINE B4 -7 217 1 5 869 200 174 22 34 chr6 37353366 37353455 -112163582 + GA-rich Low_complexity Low_complexity 4 91 0 5 869 317 187 13 0 chr6 37354263 37354338 -112162699 + CT-rich Low_complexity Low_complexity 3 78 0 5 869 629 208 15 39 chr6 37354734 37354835 -112162202 + B1_Mm SINE Alu 3 102 -45 5 869 879 118 0 0 chr6 37354835 37354970 -112162067 + (GGAA)n Simple_repeat Simple_repeat 2 136 0 5 869 629 208 15 39 chr6 37354970 37354998 -112162039 + B1_Mm SINE Alu 103 129 -18 5 869 1009 232 4 72 chr6 37355492 37355505 -112161532 + MTE2b LTR MaLR 1 11 -368 5 108 1333 153 14 5 chr6 37355505 37355728 -112161309 - URR1B DNA MER1_type 0 225 1 5 870 1009 241 5 63 chr6 37355728 37355981 -112161056 + MTE2b LTR MaLR 12 253 -126 5 870 657 309 84 46 chr6 37356929 37357346 -112159691 + MLT1H LTR MaLR 108 529 -20 5 870 995 55 0 8 chr6 37357565 37357693 -112159344 + B2_Mm2 SINE B2 2 128 -67 5 870 261 0 0 0 chr6 37357703 37357732 -112159305 + (A)n Simple_repeat Simple_repeat 1 29 0 5 870 259 386 133 12 chr6 37357972 37358137 -112158900 - MIRb SINE MIR -80 188 4 5 870 207 0 0 0 chr6 37358410 37358433 -112158604 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 870 1113 260 26 23 chr6 37358435 37358699 -112158338 - B4 SINE B4 -27 265 1 5 870 1237 291 47 43 chr6 37358937 37359259 -112157778 + Lx6 LINE L1 7000 7323 -137 5 870 234 0 0 0 chr6 37359259 37359285 -112157752 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 870 1237 291 47 43 chr6 37359285 37359385 -112157652 + Lx6 LINE L1 7324 7424 -36 5 870 486 0 0 0 chr6 37359396 37359450 -112157587 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 5 870 532 259 61 12 chr6 37359591 37359632 -112157405 + B4 SINE B4 42 164 -128 5 870 880 28 0 0 chr6 37359632 37359741 -112157296 + B1_Mus2 SINE Alu 1 109 -38 5 870 317 188 91 82 chr6 37359671 37359781 -112157256 + RLTR25B LTR ERVK 441 551 -477 5 870 532 259 61 12 chr6 37359741 37359755 -112157282 + B4 SINE B4 165 213 -79 5 870 314 316 85 17 chr6 37360750 37360927 -112156110 - MER5A DNA MER1_type 0 189 1 5 870 593 254 70 154 chr6 37361713 37362011 -112155026 + MLT1A LTR MaLR 25 297 -77 5 870 253 275 50 92 chr6 37362742 37362862 -112154175 - MIRb SINE MIR -153 115 1 5 870 453 133 0 0 chr6 37363032 37363107 -112153930 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 870 984 200 4 4 chr6 37363098 37363354 -112153683 + GA-rich Low_complexity Low_complexity 1 256 0 5 870 326 338 110 10 chr6 37363566 37363775 -112153262 + L1MC4 LINE L1 7691 7920 -122 5 870 1070 284 42 32 chr6 37363804 37364205 -112152832 + Lx9 LINE L1 7061 7465 -179 5 870 432 0 0 0 chr6 37364206 37364254 -112152783 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 870 462 312 8 15 chr6 37364517 37364647 -112152390 - RSINE1 SINE B4 -17 148 20 5 870 525 235 0 0 chr6 37364699 37364801 -112152236 + B3 SINE B2 13 114 -102 5 870 242 259 136 0 chr6 37364795 37364876 -112152161 - B3 SINE B2 -124 92 1 5 870 224 229 33 0 chr6 37366484 37366545 -112150492 + CT-rich Low_complexity Low_complexity 2 64 0 5 870 1708 21 0 0 chr6 37367216 37367408 -112149629 - B2_Mm1a SINE B2 0 193 2 5 870 254 291 0 44 chr6 37367739 37367761 -112149276 + polypurine Low_complexity Low_complexity 3 23 0 5 870 835 222 49 29 chr6 37367761 37367927 -112149110 + B3 SINE B2 1 171 -45 5 870 414 100 0 0 chr6 37367927 37367987 -112149050 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 870 835 222 49 29 chr6 37367987 37368024 -112149013 + B3 SINE B2 172 208 -8 5 870 254 291 0 44 chr6 37368024 37368091 -112148946 + polypurine Low_complexity Low_complexity 24 88 0 5 870 180 0 0 0 chr6 37368422 37368442 -112148595 + (G)n Simple_repeat Simple_repeat 1 20 0 5 870 239 220 67 17 chr6 37370695 37370815 -112146222 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 5 870 1700 222 76 28 chr6 37371651 37372109 -112144928 + Lx9 LINE L1 6952 7431 -213 5 870 522 0 0 0 chr6 37372124 37372182 -112144855 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 870 265 153 259 9 chr6 37372188 37372300 -112144737 + Lx9 LINE L1 7501 7640 -4 5 870 280 338 166 0 chr6 37372613 37372764 -112144273 - MER5B DNA MER1_type -2 176 1 5 870 368 287 98 10 chr6 37375913 37376015 -112141022 - PB1D9 SINE Alu -1 119 9 5 870 279 330 0 69 chr6 37375931 37376032 -112141005 - ID_B1 SINE B4 -54 170 77 5 870 251 257 72 105 chr6 37375937 37376089 -112140948 - MT2B2 LTR ERVL -343 241 95 5 870 1749 79 55 155 chr6 37376393 37376754 -112140283 + ORR1A4 LTR MaLR 1 325 -4 5 870 234 306 43 77 chr6 37377208 37377325 -112139712 - L2a LINE L2 -20 3406 3294 5 870 1157 180 14 5 chr6 37378648 37378855 -112138182 + B3 SINE B2 1 209 -7 5 870 415 267 28 9 chr6 37378938 37379044 -112137993 + ID_B1 SINE B4 2 109 -115 5 870 335 205 25 37 chr6 37379104 37379185 -112137852 + B3A SINE B2 27 106 -92 5 870 580 281 0 7 chr6 37379506 37379642 -112137395 - ID_B1 SINE B4 -10 214 80 5 870 207 100 0 0 chr6 37379843 37379873 -112137164 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 870 249 342 69 40 chr6 37380451 37380698 -112136339 + L2 LINE L2 2335 2588 -831 5 870 346 305 0 110 chr6 37380996 37381114 -112135923 + ID_B1 SINE B4 86 190 -34 5 870 274 157 19 38 chr6 37381390 37381496 -112135541 + (CAGAGA)n Simple_repeat Simple_repeat 2 105 0 5 870 360 266 17 17 chr6 37382017 37382132 -112134905 + PB1D10 SINE Alu 3 117 0 5 870 24 67 0 0 chr6 37382186 37382231 -112134806 + AT_rich Low_complexity Low_complexity 1 45 0 5 870 357 254 171 23 chr6 37382343 37382472 -112134565 + B1F1 SINE Alu 2 149 0 5 870 606 28 0 0 chr6 37382692 37382764 -112134273 + (CCA)n Simple_repeat Simple_repeat 1 72 0 5 870 25 0 0 0 chr6 37382784 37382809 -112134228 + AT_rich Low_complexity Low_complexity 1 25 0 5 870 207 0 0 0 chr6 37383404 37383427 -112133610 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 870 951 66 0 0 chr6 37383528 37383649 -112133388 + B1_Mm SINE Alu 6 126 -21 5 870 269 202 59 69 chr6 37383562 37383663 -112133374 + RLTR25B LTR ERVK 441 540 -488 5 870 1098 135 0 0 chr6 37383709 37383887 -112133150 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 5 870 315 0 0 0 chr6 37383890 37383925 -112133112 + (GAGAA)n Simple_repeat Simple_repeat 1 35 0 5 870 365 210 12 12 chr6 37383943 37384025 -112133012 + B1F SINE Alu 65 146 -3 5 870 228 246 13 92 chr6 37384386 37384462 -112132575 - MLT2F LTR ERVL -537 126 57 5 870 2288 113 102 3 chr6 37384668 37385039 -112131998 + MTC LTR MaLR 14 421 0 5 870 878 244 23 83 chr6 37386229 37386529 -112130508 + RLTR11B LTR ERVK 1 282 -171 5 870 501 97 0 0 chr6 37386604 37386676 -112130361 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 870 671 225 0 113 chr6 37386791 37386972 -112130065 + B3A SINE B2 40 201 -15 5 870 225 0 0 0 chr6 37386972 37386997 -112130040 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 5 870 638 225 0 113 chr6 37386997 37387010 -112130027 + B3 SINE B2 202 212 -4 5 870 356 284 88 72 chr6 37388221 37388346 -112128691 + MIRb SINE MIR 20 146 -122 5 870 281 275 0 12 chr6 37388565 37388646 -112128391 - MER45A DNA Tip100 -13 165 86 5 870 825 261 15 137 chr6 37388650 37388979 -112128058 + B4 SINE B4 4 292 0 5 870 216 0 0 0 chr6 37389598 37389622 -112127415 + (A)n Simple_repeat Simple_repeat 1 24 0 6 870 261 268 14 0 chr6 37389654 37389725 -112127312 + L2a LINE L2 3338 3409 -17 6 870 534 209 14 41 chr6 37392833 37392978 -112124059 - ID_B1 SINE B4 -2 222 82 6 870 420 82 0 0 chr6 37393529 37393590 -112123447 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 6 870 941 123 14 0 chr6 37393591 37393729 -112123308 - B1_Mur4 SINE Alu -9 141 2 6 870 1051 49 7 0 chr6 37393744 37393886 -112123151 - B1_Mus1 SINE Alu 0 148 6 6 870 287 291 146 0 chr6 37394232 37394335 -112122702 + MLT1F2 LTR MaLR 274 391 -169 6 870 1421 94 0 5 chr6 37395016 37395208 -112121829 - B2_Mm2 SINE B2 -3 192 2 6 870 254 276 0 0 chr6 37395665 37395723 -112121314 - RSINE1 SINE B4 -86 79 22 6 870 186 43 0 0 chr6 37395850 37395873 -112121164 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 870 626 252 7 0 chr6 37396928 37397063 -112119974 - ID_B1 SINE B4 0 224 89 6 870 312 296 213 0 chr6 37397075 37397087 -112119950 + ID_B1 SINE B4 91 218 -3 6 870 345 226 301 0 chr6 37397087 37397180 -112119857 + B1F SINE Alu 23 143 -6 6 870 1190 35 7 0 chr6 37397422 37397563 -112119474 - B1_Mus1 SINE Alu -5 143 2 6 870 1243 256 30 56 chr6 37397564 37397937 -112119100 - ORR1D2 LTR MaLR -7 363 1 6 870 485 279 43 0 chr6 37398418 37398558 -112118479 + MER82 DNA MER2_type 3 148 -505 6 870 180 0 0 0 chr6 37398566 37398586 -112118451 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 870 195 167 0 0 chr6 37398588 37398630 -112118407 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 870 277 303 41 8 chr6 37398746 37398869 -112118168 - L1M4 LINE L1 -1106 5040 4914 6 870 487 306 103 4 chr6 37398971 37399176 -112117861 + MLT2D LTR ERVL 77 295 -119 6 870 382 301 160 30 chr6 37399273 37399711 -112117326 - L1M4 LINE L1 -1381 4765 4277 6 870 458 318 82 35 chr6 37399807 37400126 -112116911 + MLT1A0 LTR MaLR 1 334 -31 6 870 311 205 51 0 chr6 37400882 37400960 -112116077 + PB1D10 SINE Alu 22 103 -14 6 870 536 296 75 0 chr6 37401028 37401241 -112115796 + MER2 DNA MER2_type 87 315 -30 6 870 724 249 140 5 chr6 37401601 37401877 -112115160 - RMER20B LTR ERVK -61 455 147 6 870 473 279 16 36 chr6 37402017 37402183 -112114854 - RMER20B LTR ERVK -355 161 1 6 870 2837 154 85 11 chr6 37402211 37402751 -112114286 + L1_Mur3 LINE L1 2517 3096 -2784 6 870 6201 176 39 30 chr6 37402753 37403465 -112113572 + Lx7 LINE L1 6026 6752 -944 6 870 1212 133 55 28 chr6 37403465 37403682 -112113355 + URR1A DNA MER1_type 2 224 -2 6 870 6201 176 39 30 chr6 37403682 37404165 -112112872 + Lx7 LINE L1 6753 7231 -465 6 870 956 194 109 56 chr6 37404193 37404460 -112112577 + Lx7 LINE L1 7416 7696 0 6 870 387 259 53 18 chr6 37404583 37404697 -112112340 - RSINE1 SINE B4 -2 163 46 6 870 610 302 82 5 chr6 37404750 37404956 -112112081 + MER2 DNA MER2_type 123 344 -1 6 870 216 0 0 0 chr6 37404978 37405002 -112112035 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 870 1613 47 0 5 chr6 37405386 37405580 -112111457 + B2_Mm1t SINE B2 1 193 0 6 870 217 250 0 0 chr6 37406332 37406388 -112110649 + T-rich Low_complexity Low_complexity 1 56 0 6 870 250 321 138 0 chr6 37406861 37406970 -112110067 + MER21B LTR ERV1 43 166 -697 6 870 369 0 0 0 chr6 37407048 37407089 -112109948 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 870 1151 51 0 0 chr6 37407089 37407227 -112109810 - B1_Mus2 SINE Alu -9 138 1 6 870 516 32 0 0 chr6 37407247 37407309 -112109728 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 6 870 342 199 7 40 chr6 37407327 37407401 -112109636 + GA-rich Low_complexity Low_complexity 3 74 0 6 870 1146 107 0 0 chr6 37407401 37407578 -112109459 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 6 870 342 199 7 40 chr6 37407578 37407655 -112109382 + GA-rich Low_complexity Low_complexity 75 149 0 6 870 399 299 159 44 chr6 37407874 37408189 -112108848 + MER21B LTR ERV1 406 756 -107 6 870 293 270 0 0 chr6 37408557 37408620 -112108417 - MER2 DNA MER2_type -28 317 255 6 870 326 314 80 8 chr6 37408752 37408877 -112108160 - B4A SINE B4 -26 266 133 6 870 252 0 0 0 chr6 37408889 37408917 -112108120 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 6 870 827 139 43 37 chr6 37408917 37409081 -112107956 - Lx3_Mus LINE L1 -19 6990 6826 6 870 1374 7 0 0 chr6 37409081 37409236 -112107801 + (TTC)n Simple_repeat Simple_repeat 3 157 0 6 870 198 0 0 0 chr6 37409240 37409262 -112107775 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 6 870 1044 112 0 30 chr6 37409264 37409429 -112107608 - B2_Mm2 SINE B2 -34 161 2 6 870 4072 92 72 35 chr6 37409429 37409523 -112107514 - Lx3_Mus LINE L1 -178 6831 6757 6 870 1919 116 12 51 chr6 37409523 37409858 -112107179 - RLTRETN_Mm LTR ERVK 0 322 1 6 870 4072 92 72 35 chr6 37409858 37410416 -112106621 - Lx3_Mus LINE L1 -253 6756 6155 6 870 592 268 19 6 chr6 37410416 37410574 -112106463 - B4A SINE B4 -132 160 1 6 870 281 312 67 30 chr6 37411077 37411242 -112105795 + L1MCa LINE L1 2 172 -6336 6 870 835 161 6 11 chr6 37411370 37411546 -112105491 + C-rich Low_complexity Low_complexity 4 178 0 6 870 701 160 11 22 chr6 37411582 37411761 -112105276 + C-rich Low_complexity Low_complexity 3 179 0 6 870 284 176 0 38 chr6 37411761 37411814 -112105223 + polypyrimidine Low_complexity Low_complexity 5 55 0 6 870 586 223 4 8 chr6 37411822 37412070 -112104967 + CT-rich Low_complexity Low_complexity 1 246 0 6 870 764 299 30 23 chr6 37412871 37413135 -112103902 + L1MCa LINE L1 2663 2928 -3393 6 870 744 207 101 72 chr6 37413147 37413355 -112103682 + B3 SINE B2 2 215 -1 6 870 436 267 41 16 chr6 37413365 37413487 -112103550 - B1_Mur1 SINE Alu -10 139 15 6 870 345 226 93 14 chr6 37413498 37413637 -112103400 + L1MCa LINE L1 2941 3090 -3231 6 870 299 268 40 104 chr6 37413671 37413796 -112103241 + PB1D10 SINE Alu 1 117 0 6 870 988 294 3 20 chr6 37413845 37414144 -112102893 + Lx8 LINE L1 6360 6653 -820 6 870 2138 133 65 54 chr6 37414145 37414607 -112102430 + IAPLTR2_Mm LTR ERVK 1 467 -8 6 870 632 244 47 58 chr6 37414627 37414818 -112102219 + Lx8 LINE L1 6676 6864 -609 6 870 371 224 37 213 chr6 37414822 37414878 -112102159 + ID_B1 SINE B4 103 147 -77 6 870 775 155 0 86 chr6 37414878 37415040 -112101997 + B1_Mur4 SINE Alu 2 149 -1 6 870 371 224 37 213 chr6 37415040 37415119 -112101918 + ID_B1 SINE B4 148 214 -10 6 870 223 0 108 0 chr6 37415159 37415196 -112101841 + (CAAAC)n Simple_repeat Simple_repeat 3 43 0 6 870 228 214 89 41 chr6 37415196 37415342 -112101695 + L1MCa LINE L1 3108 3260 -3061 6 870 598 234 108 15 chr6 37415345 37415540 -112101497 + B4 SINE B4 2 214 -78 6 870 305 286 3 0 chr6 37415601 37415690 -112101347 + ID4 SINE ID 1 91 -61 6 870 275 154 0 60 chr6 37415760 37415843 -112101194 + GA-rich Low_complexity Low_complexity 2 79 0 6 870 857 219 204 17 chr6 37415845 37416189 -112100848 + L1MCa LINE L1 3518 3925 -2396 6 870 665 124 0 0 chr6 37416257 37416362 -112100675 - MTB_Mm LTR MaLR -300 107 3 6 870 24 0 0 0 chr6 37416586 37416610 -112100427 + AT_rich Low_complexity Low_complexity 1 24 0 6 870 597 250 14 28 chr6 37416680 37416824 -112100213 - RSINE1 SINE B4 -21 144 3 6 870 326 313 50 20 chr6 37416922 37417023 -112100014 - PB1D10 SINE Alu -13 104 1 6 870 754 252 115 4 chr6 37417093 37417372 -112099665 + L1MCa LINE L1 4609 4918 -1403 6 870 4403 68 38 14 chr6 37417372 37417958 -112099079 + L1Md_F2 LINE L1 5983 6582 0 6 870 1185 192 9 14 chr6 37418111 37418327 -112098710 - B3 SINE B2 0 216 2 6 870 3271 174 22 7 chr6 37418427 37419018 -112098019 + Lx9 LINE L1 6820 7419 -225 6 870 494 158 33 17 chr6 37419018 37419129 -112097908 + ORR1B1 LTR MaLR 1 93 -301 6 870 180 77 0 0 chr6 37420218 37420244 -112096793 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 870 848 136 30 0 chr6 37420244 37420376 -112096661 - B1_Mur4 SINE Alu -10 140 5 6 870 2747 90 33 8 chr6 37420474 37420867 -112096170 + RLTR9D LTR ERVK 1 403 0 6 870 440 295 75 15 chr6 37420890 37421024 -112096013 + B1F SINE Alu 7 148 -1 6 870 321 280 0 26 chr6 37421075 37421152 -112095885 + B3A SINE B2 2 76 -122 6 870 235 283 8 94 chr6 37421649 37421766 -112095271 - L1M5 LINE L1 -405 5774 5668 6 870 213 183 0 0 chr6 37422104 37422164 -112094873 + CT-rich Low_complexity Low_complexity 1 60 0 6 870 3932 140 79 29 chr6 37423105 37423805 -112093232 - RMER19A LTR ERVK 0 737 3 6 870 319 246 33 41 chr6 37425338 37425495 -112091542 - RLTR13D3 LTR ERVK -43 1071 983 6 870 257 167 0 0 chr6 37425756 37425798 -112091239 - B2_Mm2 SINE B2 -153 42 1 6 870 3059 99 2 0 chr6 37426328 37426744 -112090293 + L1_Mus4 LINE L1 6211 6627 -9 6 870 1162 69 0 0 chr6 37426790 37426935 -112090102 + B1_Mus1 SINE Alu 1 145 -3 6 870 238 231 31 0 chr6 37427011 37427076 -112089961 - LTR37B LTR ERV1 -222 246 180 6 870 4464 129 28 12 chr6 37427432 37428171 -112088866 + L1_Mur2 LINE L1 4098 4848 -1029 6 870 710 276 129 42 chr6 37428201 37428398 -112088639 - L1MA9 LINE L1 -66 6234 5995 6 870 2164 89 32 79 chr6 37428398 37428739 -112088298 - ORR1A2 LTR MaLR 0 327 3 6 870 710 267 107 48 chr6 37428739 37428939 -112088098 - L1MA9 LINE L1 -318 5994 5776 6 870 2655 76 89 5 chr6 37428939 37429308 -112087729 + MTB LTR MaLR 1 400 0 6 870 710 278 99 46 chr6 37429308 37429481 -112087556 - L1MA9 LINE L1 -522 5775 5601 6 870 1742 187 107 23 chr6 37429504 37430065 -112086972 - Lx9 LINE L1 -8 7636 6985 6 870 254 279 74 0 chr6 37430073 37430195 -112086842 - L1MA9 LINE L1 -705 5607 5477 6 870 354 227 219 5 chr6 37430272 37430407 -112086630 - L1MA9 LINE L1 -827 5473 5320 6 870 753 176 0 22 chr6 37430427 37430561 -112086476 - B1_Mur4 SINE Alu -10 140 10 6 870 320 253 23 11 chr6 37430751 37430839 -112086198 - Lx8 LINE L1 -358 7115 7027 6 870 478 280 0 0 chr6 37430879 37430986 -112086051 - Lx8 LINE L1 -554 6919 6813 6 870 2115 177 122 59 chr6 37430989 37431794 -112085243 + RMER6C LTR ERVK 1 695 -25 6 870 22 35 0 0 chr6 37431806 37431835 -112085202 + AT_rich Low_complexity Low_complexity 1 29 0 6 870 285 68 0 22 chr6 37431896 37431941 -112085096 + URR1B DNA MER1_type 154 197 -28 6 870 950 105 0 13 chr6 37431977 37432131 -112084906 + RLTR14 LTR ERV1 7 158 -224 6 870 1187 216 4 38 chr6 37432131 37432370 -112084667 + RLTR14 LTR ERV1 128 363 -19 6 870 2924 54 48 20 chr6 37432370 37432770 -112084267 - RLTR10A LTR ERVK 0 411 1 6 870 1187 216 4 38 chr6 37432770 37432794 -112084243 + RLTR14 LTR ERV1 364 382 0 6 870 430 303 24 6 chr6 37432833 37432999 -112084038 - L1MA9 LINE L1 -911 5232 5064 6 870 364 281 202 30 chr6 37433004 37433202 -112083835 - MLT1D LTR MaLR -9 496 265 6 870 2152 247 103 55 chr6 37433814 37434729 -112082308 - L1MA9 LINE L1 -1092 5051 4093 6 870 541 258 149 67 chr6 37435520 37435715 -112081322 + ID_B1 SINE B4 5 215 -9 6 870 189 74 0 0 chr6 37435715 37435742 -112081295 + (ATG)n Simple_repeat Simple_repeat 1 27 0 6 870 24 32 0 0 chr6 37436152 37436183 -112080854 + AT_rich Low_complexity Low_complexity 1 31 0 6 870 620 309 7 0 chr6 37436214 37436363 -112080674 - RSINE1 SINE B4 -14 151 2 6 870 969 254 25 32 chr6 37436476 37436753 -112080284 - B4A SINE B4 -17 275 1 7 870 264 30 0 0 chr6 37437155 37437188 -112079849 + (TTG)n Simple_repeat Simple_repeat 2 34 0 7 870 2390 152 41 7 chr6 37437313 37437749 -112079288 + RMER6B LTR ERVK 1 451 -10 7 870 3330 97 24 2 chr6 37437759 37438226 -112078811 - Lx3_Mus LINE L1 0 7009 6533 7 870 14685 143 42 53 chr6 37438244 37438351 -112078686 + MYSERV6-int LTR ERVK 2 108 -8851 7 870 1266 112 16 0 chr6 37438351 37438538 -112078499 + B2_Mm1t SINE B2 1 190 -3 7 870 14685 143 42 53 chr6 37438538 37441129 -112075908 + MYSERV6-int LTR ERVK 109 2668 -6291 7 870 1241 119 11 0 chr6 37441132 37441308 -112075729 + B2_Mm1t SINE B2 2 179 -14 7 870 266 167 0 36 chr6 37441374 37441430 -112075607 + B2_Mm2 SINE B2 47 100 -95 7 870 180 0 0 0 chr6 37441460 37441480 -112075557 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 870 1243 93 5 35 chr6 37441489 37441690 -112075347 + MYSERV6-int LTR ERVK 2673 2867 -6092 7 870 1134 264 134 53 chr6 37441716 37442070 -112074967 - Lx8 LINE L1 -237 7236 6844 7 870 231 36 0 0 chr6 37442070 37442098 -112074939 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 870 1134 264 134 53 chr6 37442098 37442251 -112074786 - Lx8 LINE L1 -630 6843 6688 7 870 403 276 82 17 chr6 37442311 37442543 -112074494 + L1M2 LINE L1 5565 5811 -480 7 870 423 0 0 0 chr6 37445440 37445487 -112071550 + (GGA)n Simple_repeat Simple_repeat 2 48 0 7 870 2412 99 9 0 chr6 37445631 37445954 -112071083 - ORR1A2 LTR MaLR 0 327 2 7 870 3755 131 26 52 chr6 37446330 37447061 -112069976 + RLTR19-int LTR ERVK 3265 3976 -2161 7 870 233 227 39 39 chr6 37447172 37447328 -112069709 + (TA)n Simple_repeat Simple_repeat 2 157 0 7 870 1888 184 68 43 chr6 37447392 37447834 -112069203 + RMER16-int LTR ERVK 3533 3985 -1421 7 870 2547 279 43 60 chr6 37448070 37449054 -112067983 + RMER16-int LTR ERVK 3982 4951 -455 7 870 2019 113 9 51 chr6 37449054 37449390 -112067647 + RLTRETN_Mm LTR ERVK 1 322 0 7 870 2547 279 43 60 chr6 37449390 37449474 -112067563 + RMER16-int LTR ERVK 4952 5032 -374 7 870 297 310 0 60 chr6 37449659 37449810 -112067227 + IAP-d-int LTR ERVK 6379 6520 -22 7 870 21 71 0 0 chr6 37450433 37450475 -112066562 + AT_rich Low_complexity Low_complexity 1 42 0 7 870 1363 274 9 6 chr6 37450673 37451004 -112066033 - MTE2b LTR MaLR -26 353 22 7 870 362 205 49 0 chr6 37451074 37451196 -112065841 + (TA)n Simple_repeat Simple_repeat 2 129 0 7 870 2065 156 45 16 chr6 37452632 37453011 -112064026 + ORR1B1 LTR MaLR 5 394 0 7 870 415 86 0 0 chr6 37453071 37453129 -112063908 + MT2B LTR ERVL 28 85 -516 7 870 2211 181 32 10 chr6 37453130 37453533 -112063504 + Lx5 LINE L1 6633 7044 -6 7 870 1686 232 111 83 chr6 37453879 37454579 -112062458 + RMER6D LTR ERVK 1 720 0 7 870 362 287 62 8 chr6 37455191 37455321 -112061716 + MER90 LTR ERV1 31 167 -408 7 870 1513 224 72 3 chr6 37455532 37455881 -112061156 - MTD LTR MaLR -16 403 31 7 870 275 177 0 16 chr6 37456324 37456339 -112060698 + (CA)n Simple_repeat Simple_repeat 1 15 0 7 870 660 26 0 0 chr6 37456339 37456417 -112060620 + (TC)n Simple_repeat Simple_repeat 1 78 0 7 870 275 177 0 16 chr6 37456417 37456464 -112060573 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 870 1681 121 48 32 chr6 37456603 37456918 -112060119 + RLTR17 LTR ERVK 1 320 -372 7 870 302 297 0 0 chr6 37457124 37457188 -112059849 - ID4 SINE ID -19 64 1 7 870 403 180 0 107 chr6 37457204 37457316 -112059721 - PB1D10 SINE Alu -1 116 17 7 870 715 128 0 0 chr6 37458496 37458605 -112058432 + B1_Mus2 SINE Alu 31 139 -8 7 870 303 350 12 31 chr6 37459456 37459618 -112057419 + RLTR42-int LTR ERVK 1164 1322 -4200 7 870 283 216 60 47 chr6 37459676 37459766 -112057271 - B1F2 SINE Alu -8 109 26 7 870 272 114 0 0 chr6 37460012 37460056 -112056981 + B2_Mm2 SINE B2 2 45 -150 7 870 328 282 113 43 chr6 37460582 37460697 -112056340 - B1F1 SINE Alu 0 149 27 7 870 380 278 28 0 chr6 37462222 37462330 -112054707 - PB1D7 SINE Alu 0 120 10 7 870 364 287 0 31 chr6 37462851 37462948 -112054089 + RSINE1 SINE B4 43 136 -29 7 870 280 172 62 0 chr6 37463283 37463347 -112053690 - MTE2a LTR MaLR -1 378 311 7 870 1238 38 0 0 chr6 37463347 37463506 -112053531 - MusHAL1 LINE L1 -2553 159 1 7 870 22525 127 21 12 chr6 37463481 37467892 -112049145 - L1VL1 LINE L1 -1007 4876 427 7 870 8129 57 3 2 chr6 37468201 37469386 -112047651 - L1_Mus1 LINE L1 0 6567 5382 7 870 1898 91 91 0 chr6 37469383 37469668 -112047369 - L1VL4 LINE L1 -3924 1959 1649 7 870 2372 42 3 6 chr6 37469668 37469979 -112047058 + RLTR13C2 LTR ERVK 1 310 -498 7 870 2825 169 29 80 chr6 37469979 37471297 -112045740 - L1VL4 LINE L1 -4318 1565 252 7 870 23 78 0 0 chr6 37471425 37471476 -112045561 + AT_rich Low_complexity Low_complexity 1 51 0 7 870 262 167 0 0 chr6 37471508 37471550 -112045487 + B2_Mm2 SINE B2 1 42 -153 7 870 251 244 82 148 chr6 37471788 37471971 -112045066 + RLTR13D3 LTR ERVK 944 1114 0 7 870 928 207 4 100 chr6 37471982 37472213 -112044824 - L1VL4 LINE L1 -6019 619 411 7 870 2177 156 10 54 chr6 37472212 37472619 -112044418 - L1VL4 LINE L1 -5532 770 382 7 870 245 121 35 0 chr6 37472826 37472884 -112044153 - ORR1A3-int LTR MaLR -1094 869 810 7 870 253 280 67 0 chr6 37472847 37472922 -112044115 - B1_Mus2 SINE Alu -22 125 46 7 870 2338 204 62 29 chr6 37472897 37473446 -112043591 - RLTR25B LTR ERVK -432 596 30 7 870 1227 48 0 0 chr6 37474121 37474268 -112042769 - B1_Mus2 SINE Alu 0 147 1 7 870 301 267 136 32 chr6 37474273 37474428 -112042609 + RLTR13D5 LTR ERVK 845 1015 -8 7 870 652 270 8 97 chr6 37474429 37474667 -112042370 + Lx6 LINE L1 6643 6859 -601 7 870 644 321 65 40 chr6 37475027 37475472 -112041565 - MuLV-int LTR ERV1 -188 7418 6963 7 870 287 263 0 0 chr6 37476809 37476885 -112040152 - RLTR4_MM-int LTR ERV1 -2033 5568 5493 7 870 1602 279 11 4 chr6 37477094 37477548 -112039489 - MuRRS4-int LTR ERV1 -1049 4014 3558 7 870 333 0 0 0 chr6 37478399 37478436 -112038601 + (T)n Simple_repeat Simple_repeat 1 37 0 7 870 285 259 109 27 chr6 37478442 37478589 -112038448 + MTE-int LTR MaLR 933 1091 -489 7 870 456 163 81 0 chr6 37479001 37479087 -112037950 - B1_Mur3 SINE Alu -19 130 38 7 870 301 290 75 0 chr6 37479136 37479243 -112037794 + Tigger7 DNA MER2_type 294 408 -2083 7 870 257 288 30 15 chr6 37479277 37479344 -112037693 + Tigger7 DNA MER2_type 2423 2490 -1 7 870 3233 53 2 5 chr6 37479682 37480078 -112036959 + MTA_Mm LTR MaLR 2 396 0 7 870 324 0 0 0 chr6 37480351 37480387 -112036650 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 870 265 363 39 0 chr6 37480495 37480597 -112036440 + RMER30 DNA MER1_type 96 201 -1 7 870 279 192 17 0 chr6 37481068 37481134 -112035903 + B4 SINE B4 3 69 -223 7 870 450 321 0 0 chr6 37481166 37481297 -112035740 + B4A SINE B4 67 197 -95 7 870 1512 88 5 0 chr6 37481297 37481491 -112035546 - Lx4A LINE L1 -437 6621 6427 7 870 793 258 19 24 chr6 37481492 37481715 -112035322 - B4A SINE B4 -69 223 2 7 870 220 335 51 63 chr6 37481998 37482208 -112034829 - MIRb SINE MIR 0 262 51 7 870 1410 161 151 60 chr6 37483060 37483410 -112033627 + ORR1C2 LTR MaLR 3 384 0 7 870 341 231 0 128 chr6 37483650 37483759 -112033278 + PB1 SINE Alu 21 115 -12 7 870 405 199 18 12 chr6 37483772 37483882 -112033155 + ID4 SINE ID 1 109 -43 7 870 240 240 0 0 chr6 37483988 37484038 -112032999 - ID4_ SINE ID -26 57 8 7 870 243 0 0 0 chr6 37484097 37484124 -112032913 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 870 252 0 0 0 chr6 37484124 37484151 -112032886 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 870 906 242 48 22 chr6 37484152 37484422 -112032615 - B4 SINE B4 -8 284 8 7 870 343 278 64 9 chr6 37484464 37484573 -112032464 - B1F SINE Alu -9 140 26 7 870 4310 122 42 41 chr6 37484583 37485012 -112032025 - RMER6A LTR ERVK 0 756 337 7 870 606 71 0 0 chr6 37485012 37485096 -112031941 + (TC)n Simple_repeat Simple_repeat 2 85 0 7 870 4310 122 42 41 chr6 37485096 37485117 -112031920 - RMER6A LTR ERVK -420 336 325 7 870 1146 70 0 7 chr6 37485117 37485261 -112031776 - B1_Mus2 SINE Alu 0 147 5 7 870 4310 122 42 41 chr6 37485261 37485564 -112031473 - RMER6A LTR ERVK -432 324 1 7 870 225 0 0 0 chr6 37485648 37485673 -112031364 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 870 25 0 0 0 chr6 37486458 37486483 -112030554 + AT_rich Low_complexity Low_complexity 1 25 0 7 871 2392 211 74 72 chr6 37486713 37487521 -112029516 + RMER1B Other Other 78 1065 -1 7 871 243 0 0 0 chr6 37487524 37487551 -112029486 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 871 529 278 91 74 chr6 37487582 37487757 -112029280 + B3A SINE B2 4 181 -14 7 871 878 130 0 0 chr6 37487774 37487905 -112029132 - B1_Mus1 SINE Alu 0 148 18 7 871 343 250 47 108 chr6 37487780 37487928 -112029109 - B4 SINE B4 -72 220 82 7 871 516 174 17 11 chr6 37488305 37488479 -112028558 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 7 871 290 246 6 0 chr6 37488446 37488613 -112028424 + (TG)n Simple_repeat Simple_repeat 1 168 0 7 871 439 313 93 19 chr6 37488614 37488697 -112028340 - Lx8 LINE L1 -144 7329 7231 7 871 261 0 0 0 chr6 37488697 37488726 -112028311 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 871 439 313 93 19 chr6 37488726 37488847 -112028190 - Lx8 LINE L1 -243 7230 7110 7 871 712 285 15 84 chr6 37489138 37489471 -112027566 + RLTR18 LTR ERVK 5 314 -302 7 871 569 261 102 99 chr6 37489511 37489834 -112027203 + RLTR18B LTR ERVK 186 509 -3 7 871 687 240 19 48 chr6 37489863 37490073 -112026964 + RLTR18-int LTR ERVK 3 206 -5155 7 871 1371 149 34 34 chr6 37490669 37490933 -112026104 + RLTR18-int LTR ERVK 2607 2870 -2491 7 871 326 215 117 64 chr6 37490944 37491104 -112025933 - RLTR13D3 LTR ERVK 0 1114 981 7 871 205 237 0 0 chr6 37491945 37491983 -112025054 + (CGG)n Simple_repeat Simple_repeat 2 39 0 7 871 241 132 0 0 chr6 37492641 37492679 -112024358 - B2_Mm2 SINE B2 -157 38 1 7 871 488 208 118 16 chr6 37493156 37493283 -112023754 + RLTR18-int LTR ERVK 3312 3451 -1910 7 871 264 225 14 14 chr6 37493528 37493600 -112023437 + RLTR42-int LTR ERVK 896 967 -5170 7 871 1156 126 10 35 chr6 37493604 37493802 -112023235 + B2_Mm2 SINE B2 1 193 -2 8 871 730 191 92 65 chr6 37494298 37494527 -112022510 + RLTR42-int LTR ERVK 1884 2118 -3404 7 871 476 267 8 8 chr6 37494536 37494668 -112022369 + RLTR42-int LTR ERVK 2345 2476 -3661 7 871 282 106 0 0 chr6 37494668 37494715 -112022322 + (TAA)n Simple_repeat Simple_repeat 2 48 0 8 871 447 169 0 0 chr6 37494958 37495041 -112021996 + RLTR18-int LTR ERVK 5054 5136 -225 7 871 1270 274 52 71 chr6 37495043 37495561 -112021476 + RLTR18B LTR ERVK 5 512 0 7 871 2253 118 15 3 chr6 37495673 37496006 -112021031 - IAPLTR1a_Mm LTR ERVK 0 337 1 8 871 7138 34 3 17 chr6 37496008 37496870 -112020167 - IAPEz-int LTR ERVK -2 6479 5630 8 871 13154 55 88 19 chr6 37496856 37499724 -112017313 - IAPEz-int LTR ERVK -3405 3076 8 8 871 1723 113 18 4 chr6 37499724 37500000 -112017037 - IAPLTR1a_Mm LTR ERVK 0 337 58 8 871 405 105 18 0 chr6 37500000 37500057 -112016980 - IAPLTR2b LTR ERVK -269 58 1 1 871 630 39 0 0 chr6 37500490 37500567 -112016470 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 871 252 184 0 0 chr6 37500582 37500620 -112016417 - RSINE1 SINE B4 -94 71 34 3 871 209 214 14 41 chr6 37501284 37501357 -112015680 + (CAAA)n Simple_repeat Simple_repeat 4 74 0 4 871 1367 46 6 33 chr6 37501404 37501585 -112015452 - L1Md_F2 LINE L1 0 6582 6407 5 871 239 0 32 0 chr6 37502093 37502124 -112014913 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 871 504 0 0 0 chr6 37502499 37502555 -112014482 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 871 328 316 72 95 chr6 37502670 37502856 -112014181 + L1MD LINE L1 2484 2678 -3468 8 871 876 222 108 0 chr6 37502856 37503050 -112013987 + B3 SINE B2 2 216 0 9 871 328 316 72 95 chr6 37503050 37503296 -112013741 + L1MD LINE L1 2679 2906 -3240 8 871 393 313 64 24 chr6 37503358 37503656 -112013381 + L1M5 LINE L1 4398 4707 -1439 1 871 381 265 182 0 chr6 37503727 37503859 -112013178 - B3A SINE B2 -3 195 40 1 871 25 31 0 0 chr6 37503874 37503906 -112013131 + AT_rich Low_complexity Low_complexity 1 32 0 1 871 226 175 0 0 chr6 37503970 37504010 -112013027 + L1MD LINE L1 4799 4838 -1308 1 871 1156 108 0 13 chr6 37504776 37504926 -112012111 + B1_Mus1 SINE Alu 1 148 0 1 871 605 127 0 10 chr6 37504941 37505044 -112011993 + (GGA)n Simple_repeat Simple_repeat 2 103 0 1 871 229 177 146 68 chr6 37505056 37505073 -112011964 + ID_B1 SINE B4 112 214 -10 1 871 291 212 11 81 chr6 37505073 37505149 -112011888 + B1F SINE Alu 65 139 -10 1 871 297 0 0 0 chr6 37505149 37505182 -112011855 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 871 225 83 0 0 chr6 37505207 37505243 -112011794 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 871 204 40 0 0 chr6 37505341 37505366 -112011671 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 2 871 1233 89 130 0 chr6 37505410 37505579 -112011458 - B2_Mm2 SINE B2 -4 191 1 2 871 1411 75 36 26 chr6 37506027 37506219 -112010818 + B2_Mm2 SINE B2 2 195 0 2 871 872 247 0 6 chr6 37506635 37506810 -112010227 + B3 SINE B2 43 216 0 2 871 416 19 0 19 chr6 37506874 37506928 -112010109 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 2 871 1167 66 0 7 chr6 37506928 37507081 -112009956 - B2_Mm2 SINE B2 -43 152 1 2 871 486 0 0 0 chr6 37507225 37507279 -112009758 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 871 249 33 0 0 chr6 37507279 37507308 -112009729 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 871 403 267 0 10 chr6 37507308 37507410 -112009627 - RSINE1 SINE B4 -63 102 2 2 871 279 0 0 0 chr6 37508094 37508125 -112008912 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 871 216 406 25 35 chr6 37508805 37509004 -112008033 + L2 LINE L2 1918 2114 -1305 3 871 520 276 24 0 chr6 37509071 37509194 -112007843 - ID_B1 SINE B4 -7 217 92 3 871 10130 102 7 11 chr6 37509524 37511455 -112005582 - L1VL4 LINE L1 -1258 2301 381 3 871 198 0 0 0 chr6 37511965 37511987 -112005050 + (TTTTA)n Simple_repeat Simple_repeat 5 26 0 3 871 733 266 7 0 chr6 37511988 37512142 -112004895 - B3 SINE B2 -17 199 45 3 871 443 265 146 45 chr6 37512565 37512743 -112004294 + B4 SINE B4 3 198 -94 3 871 739 133 25 140 chr6 37512647 37512804 -112004233 + B1_Mur4 SINE Alu 11 149 -1 3 871 229 316 90 50 chr6 37512954 37513054 -112003983 + MT2B2 LTR ERVL 154 257 -327 3 871 299 271 90 33 chr6 37512969 37513074 -112003963 + PB1D10 SINE Alu 13 129 -20 3 871 456 19 0 0 chr6 37513074 37513127 -112003910 + (TTA)n Simple_repeat Simple_repeat 3 55 0 3 871 1481 283 61 17 chr6 37513134 37513681 -112003356 - Lx6 LINE L1 -4 7456 6506 4 871 269 151 75 0 chr6 37513687 37513740 -112003297 + L1_Mur3 LINE L1 5341 5397 -483 4 871 1690 137 88 3 chr6 37513829 37514123 -112002914 - ORR1A2 LTR MaLR -8 319 1 4 871 707 277 65 11 chr6 37514940 37515126 -112001911 + B3A SINE B2 1 196 -2 4 871 654 220 34 34 chr6 37515134 37515280 -112001757 + B1F2 SINE Alu 1 146 -3 4 871 955 250 14 23 chr6 37515292 37515509 -112001528 + B3 SINE B2 2 216 0 4 871 2565 90 19 0 chr6 37515584 37515905 -112001132 - ORR1A2 LTR MaLR 0 327 1 4 871 220 250 0 0 chr6 37516777 37516821 -112000216 + (TCG)n Simple_repeat Simple_repeat 3 46 0 4 871 359 297 33 0 chr6 37517921 37518012 -111999025 - ID_B1 SINE B4 -10 214 121 4 871 1390 87 44 0 chr6 37518171 37518354 -111998683 - B2_Mm2 SINE B2 -4 191 1 4 871 21 0 0 0 chr6 37518509 37518530 -111998507 + AT_rich Low_complexity Low_complexity 1 21 0 5 871 1150 296 100 22 chr6 37519209 37519349 -111997688 + MLT1C LTR MaLR 24 174 -293 5 871 294 29 0 0 chr6 37519349 37519384 -111997653 + (TTAA)n Simple_repeat Simple_repeat 1 35 0 5 871 1150 296 100 22 chr6 37519384 37519654 -111997383 + MLT1C LTR MaLR 175 466 -1 5 871 1200 324 73 22 chr6 37519705 37520195 -111996842 + MER77 LTR ERVL 73 587 -20 5 871 709 212 0 0 chr6 37520234 37520347 -111996690 + PB1D7 SINE Alu 1 113 -7 5 871 215 229 21 0 chr6 37520364 37520412 -111996625 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 871 762 261 126 34 chr6 37520644 37520906 -111996131 + B4A SINE B4 3 288 -4 5 871 1143 107 0 0 chr6 37520931 37521109 -111995928 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 5 871 6699 193 87 35 chr6 37521900 37523585 -111993452 - RLTR22_Mur LTR ERVK -251 1597 1 5 871 477 307 112 11 chr6 37523595 37523773 -111993264 + B3A SINE B2 3 198 0 5 871 404 313 87 96 chr6 37524043 37524262 -111992775 + MER20 DNA MER1_type 3 219 0 6 871 2042 245 82 18 chr6 37524282 37524929 -111992108 - Lx5 LINE L1 -96 7364 6462 6 871 1245 75 0 0 chr6 37524944 37525091 -111991946 - B1_Mus2 SINE Alu 0 147 1 6 871 1102 83 0 0 chr6 37525862 37525995 -111991042 - B1_Mus2 SINE Alu -14 133 1 6 871 432 268 99 0 chr6 37526224 37526366 -111990671 + ID_B1 SINE B4 1 156 -68 6 871 1459 60 33 0 chr6 37526366 37526548 -111990489 + B2_Mm2 SINE B2 2 189 -6 6 871 1073 214 160 8 chr6 37527105 37527355 -111989682 + B4A SINE B4 5 292 0 6 871 204 314 0 28 chr6 37527357 37527429 -111989608 + (CATG)n Simple_repeat Simple_repeat 1 70 0 6 871 243 140 0 0 chr6 37527430 37527480 -111989557 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 871 1150 286 112 75 chr6 37527488 37527690 -111989347 + L1M2 LINE L1 4706 4898 -1245 6 871 5010 46 2 5 chr6 37527690 37528277 -111988760 + L1Md_F2 LINE L1 5996 6580 -2 7 871 1150 291 111 75 chr6 37528277 37528856 -111988181 + L1M2 LINE L1 4868 5479 -401 6 871 458 32 0 31 chr6 37528929 37528994 -111988043 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 7 871 460 181 23 23 chr6 37529008 37529183 -111987854 + (TA)n Simple_repeat Simple_repeat 1 175 0 7 871 367 340 20 0 chr6 37529194 37529294 -111987743 + PB1 SINE Alu 15 116 -11 7 871 1697 42 5 0 chr6 37529295 37529487 -111987550 - B2_Mm1a SINE B2 0 193 1 7 871 387 302 46 8 chr6 37529536 37529666 -111987371 - B3A SINE B2 -1 215 81 7 871 754 249 113 136 chr6 37529779 37530330 -111986707 - RMER12B LTR ERVK 0 1572 1077 7 871 456 19 0 0 chr6 37530330 37530383 -111986654 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 871 345 47 0 0 chr6 37530385 37530428 -111986609 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 871 754 219 88 65 chr6 37530428 37530586 -111986451 - RMER12B LTR ERVK -257 1147 981 7 871 2435 108 57 77 chr6 37530586 37530987 -111986050 + RLTR9C LTR ERVK 1 393 0 7 871 754 219 88 65 chr6 37530987 37531027 -111986010 - RMER12B LTR ERVK -424 980 946 7 871 614 139 13 127 chr6 37531028 37531185 -111985852 - RLTR25B LTR ERVK 0 1028 890 8 871 9255 143 21 104 chr6 37531302 37533236 -111983801 - ORR1A4-int LTR MaLR -191 1772 1 8 871 1979 117 18 60 chr6 37533240 37533575 -111983462 - ORR1A4 LTR MaLR -8 321 1 8 871 687 239 8 0 chr6 37533575 37533705 -111983332 - RMER12B LTR ERVK -1265 139 9 7 871 4374 80 45 29 chr6 37533707 37534285 -111982752 - LTRIS_Mus LTR ERV1 0 587 1 8 871 233 220 0 20 chr6 37534343 37534394 -111982643 + (CATA)n Simple_repeat Simple_repeat 3 52 0 8 871 459 312 20 20 chr6 37534594 37534741 -111982296 - B1F1 SINE Alu -2 147 1 8 871 881 287 94 156 chr6 37534815 37535455 -111981582 - Tigger6a DNA MER2_type -5 1078 479 8 871 198 0 0 0 chr6 37536188 37536210 -111980827 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 871 537 300 30 45 chr6 37536337 37536536 -111980501 + ORR1E LTR MaLR 1 196 -163 8 871 182 231 0 57 chr6 37536536 37536660 -111980377 + (TCTCTG)n Simple_repeat Simple_repeat 4 120 0 8 871 427 280 105 46 chr6 37537051 37537254 -111979783 + ORR1E LTR MaLR 152 367 -7 8 871 267 330 41 10 chr6 37537271 37537369 -111979668 - MER47A DNA MER2_type -265 101 1 8 871 325 316 34 8 chr6 37537621 37537739 -111979298 + PB1 SINE Alu 3 123 -4 9 871 31 26 0 0 chr6 37537739 37537777 -111979260 + AT_rich Low_complexity Low_complexity 1 38 0 9 871 224 376 8 25 chr6 37537780 37537900 -111979137 + B2_Mm2 SINE B2 1 118 -77 9 871 856 130 57 45 chr6 37537923 37538095 -111978942 + B2_Mm2 SINE B2 10 184 -11 9 871 828 30 0 0 chr6 37538095 37538194 -111978843 + (GGAGA)n Simple_repeat Simple_repeat 5 103 0 9 871 931 233 27 64 chr6 37538755 37538975 -111978062 + B3 SINE B2 1 212 -4 9 871 306 264 14 0 chr6 37539062 37539134 -111977903 + ID4_ SINE ID 3 75 -8 9 871 326 247 0 34 chr6 37539316 37539410 -111977627 - ID4_ SINE ID -49 103 17 9 871 282 116 0 0 chr6 37539890 37539933 -111977104 + (TCC)n Simple_repeat Simple_repeat 3 45 0 9 871 282 241 34 11 chr6 37541421 37541509 -111975528 + (CCCCAG)n Simple_repeat Simple_repeat 5 94 0 9 871 351 0 0 0 chr6 37543372 37543411 -111973626 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 871 369 0 0 0 chr6 37543413 37543454 -111973583 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 871 1120 193 14 41 chr6 37544302 37544523 -111972514 - B3 SINE B2 0 216 2 1 871 573 15 0 0 chr6 37545355 37545421 -111971616 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 871 3346 49 31 0 chr6 37545468 37545856 -111971181 + MTB LTR MaLR 1 400 0 1 871 216 0 0 0 chr6 37546115 37546139 -111970898 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 871 24 0 0 0 chr6 37546448 37546472 -111970565 + AT_rich Low_complexity Low_complexity 1 24 0 1 871 451 164 682 7 chr6 37546509 37546644 -111970393 + URR1A DNA MER1_type 1 226 0 1 871 394 257 54 18 chr6 37546658 37546769 -111970268 - PB1D10 SINE Alu 0 117 3 1 871 1147 183 24 84 chr6 37547113 37547364 -111969673 + MER57E1 LTR ERV1 1 236 -136 1 871 566 295 108 28 chr6 37547369 37547590 -111969447 - RMER5 LTR ERV1 -2 532 295 1 871 312 27 0 0 chr6 37547590 37547627 -111969410 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 871 566 295 108 28 chr6 37547627 37547691 -111969346 - RMER5 LTR ERV1 -240 294 226 1 871 229 295 77 0 chr6 37547715 37547793 -111969244 - RMER5 LTR ERV1 -373 161 78 1 871 265 208 0 0 chr6 37548281 37548329 -111968708 + B3A SINE B2 1 48 -150 1 871 2599 48 0 3 chr6 37548325 37548642 -111968395 + MTA_Mm LTR MaLR 73 388 -8 1 871 8856 61 7 31 chr6 37548645 37549036 -111968001 + MTA_Mm-int LTR MaLR 1 390 -708 1 871 1814 21 0 0 chr6 37549036 37549229 -111967808 + B2_Mm1a SINE B2 1 193 0 1 871 8856 61 7 31 chr6 37549229 37549962 -111967075 + MTA_Mm-int LTR MaLR 391 1098 0 1 871 3453 48 10 2 chr6 37549962 37550355 -111966682 + MTA_Mm LTR MaLR 1 396 0 1 871 1017 108 0 0 chr6 37550410 37550765 -111966272 + (TC)n Simple_repeat Simple_repeat 1 355 0 1 871 715 263 52 7 chr6 37551319 37551472 -111965565 - RSINE1 SINE B4 -4 161 2 1 871 245 168 119 23 chr6 37551603 37551701 -111965336 + L1MCa LINE L1 750 845 -6348 1 871 682 251 114 0 chr6 37551794 37551961 -111965076 + B3 SINE B2 1 186 -30 1 871 1068 68 8 0 chr6 37552028 37552161 -111964876 + B1_Mus1 SINE Alu 5 138 -10 1 871 238 26 25 25 chr6 37552161 37552201 -111964836 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 871 349 295 64 3 chr6 37552212 37552375 -111964662 + L1MCa LINE L1 2245 2417 -4917 1 871 209 57 0 28 chr6 37552635 37552671 -111964366 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 871 1055 295 94 12 chr6 37552888 37553454 -111963583 + L1MCa LINE L1 3222 3833 -3173 1 871 248 321 25 0 chr6 37553694 37553775 -111963262 + MLT1E2 LTR MaLR 3 85 -542 1 871 180 0 0 0 chr6 37553858 37553878 -111963159 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 871 921 131 0 0 chr6 37553882 37554035 -111963002 + (TTCC)n Simple_repeat Simple_repeat 3 155 0 1 871 2567 124 11 6 chr6 37554071 37554437 -111962600 - RLTR9A LTR ERVK 0 368 1 1 871 314 252 31 45 chr6 37554578 37554693 -111962344 + ORR1D1 LTR MaLR 4 128 -280 1 871 1193 107 17 17 chr6 37555240 37555395 -111961642 + B2_Mm2 SINE B2 1 155 -40 1 871 693 0 0 0 chr6 37555395 37555472 -111961565 + (CATATA)n Simple_repeat Simple_repeat 1 77 0 1 871 1193 107 17 17 chr6 37555472 37555497 -111961540 + B2_Mm2 SINE B2 156 180 -15 1 871 312 120 0 0 chr6 37555768 37555818 -111961219 + (T)n Simple_repeat Simple_repeat 1 50 0 1 871 230 351 61 50 chr6 37555900 37556080 -111960957 + MLT1D LTR MaLR 319 500 -5 1 871 443 277 106 5 chr6 37556242 37556431 -111960606 + HAL1 LINE L1 812 1019 -1488 1 871 941 222 69 0 chr6 37556621 37556810 -111960227 + B3 SINE B2 1 202 -14 1 871 330 87 0 0 chr6 37556819 37556865 -111960172 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 1 871 290 304 152 0 chr6 37556889 37557001 -111960036 + B4 SINE B4 76 204 -88 1 871 550 208 64 0 chr6 37556910 37557035 -111960002 + B1_Mur1 SINE Alu 17 149 0 1 871 553 266 114 39 chr6 37557986 37558384 -111958653 + LTR48B LTR ERV1 39 659 -128 1 871 1016 149 18 53 chr6 37558540 37558766 -111958271 - ORR1C2 LTR MaLR 0 384 167 1 871 195 184 0 0 chr6 37558766 37558804 -111958233 + GA-rich Low_complexity Low_complexity 4 41 0 1 871 725 159 138 13 chr6 37558845 37559004 -111958033 - ORR1C2 LTR MaLR -193 181 3 1 871 216 97 0 0 chr6 37559219 37559250 -111957787 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 1 871 529 307 6 16 chr6 37559557 37559739 -111957298 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 871 206 32 32 0 chr6 37559918 37559949 -111957088 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 871 2637 260 83 102 chr6 37560516 37561767 -111955270 + RMER1C Other Other 134 1192 -150 1 871 846 98 0 0 chr6 37561767 37561889 -111955148 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1 871 2637 255 90 109 chr6 37561889 37561995 -111955042 + RMER1C Other Other 1193 1325 -17 1 871 1451 219 34 62 chr6 37562005 37562056 -111954981 - RMER5 LTR ERV1 -34 500 453 1 871 1358 206 129 6 chr6 37562056 37562398 -111954639 + ORR1C2 LTR MaLR 1 384 0 1 871 1451 219 34 62 chr6 37562398 37562817 -111954220 - RMER5 LTR ERV1 -82 452 43 1 871 351 0 0 0 chr6 37562851 37562890 -111954147 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 871 347 258 44 5 chr6 37562915 37563035 -111954002 - B4A SINE B4 -82 142 8 1 871 254 224 38 50 chr6 37562964 37563044 -111953993 - B3A SINE B2 -119 79 1 1 871 249 311 77 72 chr6 37563314 37563522 -111953515 - MLT1B LTR MaLR -175 215 7 1 871 315 244 134 0 chr6 37564702 37564784 -111952253 + PB1D10 SINE Alu 23 115 -2 1 871 533 322 6 34 chr6 37564761 37564938 -111952099 + B4 SINE B4 27 198 -94 1 871 415 256 0 110 chr6 37564947 37565092 -111951945 + ID_B1 SINE B4 86 214 -10 1 871 1130 98 46 6 chr6 37565563 37565735 -111951302 + RLTR33 LTR ERVK 1 179 -499 1 871 2295 256 63 91 chr6 37565735 37566619 -111950418 + RMER13A LTR ERVK 1 860 0 1 871 1390 113 96 0 chr6 37566619 37566848 -111950189 + RLTR33 LTR ERVK 174 424 -254 1 871 246 116 0 0 chr6 37566939 37566982 -111950055 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 871 351 0 0 0 chr6 37566982 37567021 -111950016 + (GGAGA)n Simple_repeat Simple_repeat 2 40 0 1 871 429 0 49 0 chr6 37567238 37567299 -111949738 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 871 228 307 23 0 chr6 37567344 37567432 -111949605 + MTEa LTR MaLR 290 379 0 1 871 1168 219 143 41 chr6 37568061 37568404 -111948633 - MTEa LTR MaLR -1 378 1 1 871 1017 149 201 5 chr6 37568478 37568667 -111948370 + URR1A DNA MER1_type 1 226 0 1 871 292 278 27 27 chr6 37568675 37568786 -111948251 - PB1 SINE Alu -14 113 3 1 871 501 231 105 63 chr6 37568870 37569013 -111948024 - B1F1 SINE Alu 0 149 1 1 871 293 271 30 30 chr6 37570710 37570809 -111946228 + B1F SINE Alu 51 149 0 1 871 356 318 9 9 chr6 37570842 37570953 -111946084 + B4 SINE B4 164 274 -18 1 871 215 270 0 16 chr6 37571043 37571107 -111945930 + BC1_Mm scRNA scRNA 23 85 -67 1 871 452 226 122 63 chr6 37571222 37571411 -111945626 + Zaphod2 DNA Tip100 9 208 -3316 1 871 255 133 0 0 chr6 37571887 37571932 -111945105 + (TGGGGG)n Simple_repeat Simple_repeat 3 47 0 1 871 405 0 0 0 chr6 37572039 37572084 -111944953 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 871 237 33 0 0 chr6 37572084 37572113 -111944924 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 871 298 299 75 130 chr6 37572182 37572436 -111944601 - MTE2a LTR MaLR -137 242 3 1 871 432 271 66 28 chr6 37572437 37572557 -111944480 - L1MC4a LINE L1 -195 7687 7560 1 871 465 50 0 0 chr6 37572557 37572617 -111944420 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 871 432 271 66 28 chr6 37572617 37572678 -111944359 - L1MC4a LINE L1 -323 7559 7499 1 871 578 332 111 11 chr6 37572682 37572962 -111944075 + MER21B LTR ERV1 1 308 -555 1 871 240 363 37 37 chr6 37573050 37573213 -111943824 + MER21B LTR ERV1 430 592 -271 1 871 314 285 50 77 chr6 37574077 37574286 -111942751 - L1MC4 LINE L1 -409 7586 7313 1 871 390 228 33 0 chr6 37574362 37574454 -111942583 + PB1D10 SINE Alu 23 117 0 1 871 611 25 82 0 chr6 37574459 37574581 -111942456 + (GA)n Simple_repeat Simple_repeat 1 132 0 1 871 1804 190 58 19 chr6 37574593 37574953 -111942084 - ORR1D1 LTR MaLR 0 374 1 1 871 1187 55 7 0 chr6 37574978 37575124 -111941913 + B1_Mus2 SINE Alu 1 147 0 1 871 599 283 118 119 chr6 37575147 37575303 -111941734 + Zaphod2 DNA Tip100 767 951 -2573 1 871 992 250 148 24 chr6 37575303 37575676 -111941361 - MTD LTR MaLR 0 419 1 1 871 599 283 118 119 chr6 37575676 37576442 -111940595 + Zaphod2 DNA Tip100 952 1687 -1837 1 871 590 262 107 30 chr6 37576547 37576716 -111940321 + B3A SINE B2 1 182 -16 1 871 471 274 72 8 chr6 37576774 37576899 -111940138 - B3A SINE B2 -64 134 2 1 871 396 266 0 0 chr6 37577196 37577275 -111939762 + ID4_ SINE ID 1 79 -4 1 871 670 243 166 11 chr6 37578107 37578294 -111938743 - B3 SINE B2 0 216 1 1 871 1731 153 87 6 chr6 37578373 37578708 -111938329 + ORR1B2 LTR MaLR 6 367 0 1 871 2963 149 57 62 chr6 37578712 37579290 -111937747 + RMER15 LTR ERVL 1 575 0 1 871 527 262 28 0 chr6 37579290 37579397 -111937640 + RSINE1 SINE B4 38 147 -18 1 871 2283 153 19 45 chr6 37579605 37580023 -111937014 + MTB_Mm LTR MaLR 1 407 0 1 871 360 0 0 0 chr6 37580060 37580100 -111936937 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 871 392 67 0 16 chr6 37580100 37580160 -111936877 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 871 278 212 182 0 chr6 37580168 37580234 -111936803 - B4 SINE B4 -14 278 201 1 871 2208 191 17 118 chr6 37580361 37580936 -111936101 - RLTR24 LTR ERV1 0 529 13 1 871 1082 212 5 24 chr6 37581037 37581250 -111935787 - B3 SINE B2 0 216 8 1 871 279 220 58 4 chr6 37581252 37581373 -111935664 - L1M2 LINE L1 -680 5611 5478 1 871 237 132 0 0 chr6 37581373 37581411 -111935626 + (TCC)n Simple_repeat Simple_repeat 1 38 0 1 871 670 275 77 5 chr6 37581416 37581624 -111935413 - ID_B1 SINE B4 -1 223 1 1 871 409 217 183 24 chr6 37581637 37581845 -111935192 - L1_Rod LINE L1 -442 5405 5165 1 871 740 309 72 43 chr6 37582253 37582740 -111934297 - L1M2 LINE L1 -1002 5141 4641 1 871 1077 309 92 36 chr6 37582758 37583668 -111933369 - L1_Rod LINE L1 -3640 2207 1247 1 871 1308 220 120 18 chr6 37583883 37584217 -111932820 - ORR1D2 LTR MaLR -2 368 1 1 871 366 80 0 0 chr6 37584256 37584306 -111932731 + (TATG)n Simple_repeat Simple_repeat 1 50 0 2 871 486 292 73 0 chr6 37584309 37584446 -111932591 - B3 SINE B2 -67 149 3 2 871 776 164 48 43 chr6 37585045 37585272 -111931765 + ORR1C2 LTR MaLR 113 384 0 2 871 525 319 12 0 chr6 37585338 37585498 -111931539 - RSINE1 SINE B4 0 165 4 2 871 476 269 19 0 chr6 37585642 37585750 -111931287 + PB1D7 SINE Alu 1 110 -10 2 871 415 276 106 69 chr6 37585760 37586165 -111930872 + Zaphod2 DNA Tip100 2408 2827 -697 1 871 839 203 95 15 chr6 37586492 37586692 -111930345 - ORR1D2 LTR MaLR 0 370 155 2 871 339 25 0 0 chr6 37586783 37586823 -111930214 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 871 373 287 124 0 chr6 37587103 37587232 -111929805 - ORR1D2 LTR MaLR -225 145 1 2 871 266 294 110 0 chr6 37587424 37587533 -111929504 - Lx8 LINE L1 -201 7272 7152 2 871 4066 151 15 51 chr6 37587758 37588615 -111928422 + RLTR22_Mur LTR ERVK 4 829 -1019 2 871 1239 54 0 0 chr6 37588657 37588805 -111928232 - B1_Mus1 SINE Alu 0 148 1 2 871 400 108 0 44 chr6 37588807 37588875 -111928162 - ORR1C2 LTR MaLR -319 65 1 2 871 439 162 0 0 chr6 37588875 37588954 -111928083 + Charlie12 DNA MER1_type 1897 1975 -898 2 871 828 57 0 0 chr6 37588960 37589066 -111927971 + (TATG)n Simple_repeat Simple_repeat 4 109 0 2 871 657 257 0 0 chr6 37589080 37589216 -111927821 - RSINE1 SINE B4 -28 137 2 2 871 486 270 0 13 chr6 37589219 37589369 -111927668 + Charlie12 DNA MER1_type 2619 2766 -107 2 871 259 281 0 0 chr6 37590045 37590102 -111926935 - ID4_ SINE ID -25 58 2 2 871 1930 115 12 134 chr6 37590312 37590715 -111926322 - ORR1B1 LTR MaLR 0 394 41 2 871 28 29 0 0 chr6 37590944 37590979 -111926058 + AT_rich Low_complexity Low_complexity 1 35 0 2 871 6743 92 31 0 chr6 37591153 37592106 -111924931 + L1_Mm LINE L1 3456 4438 -1445 2 871 250 275 96 36 chr6 37592412 37592495 -111924542 - MIRc SINE MIR -65 203 116 2 871 243 0 0 0 chr6 37592615 37592642 -111924395 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 871 189 148 0 62 chr6 37593237 37593302 -111923735 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 2 871 363 192 25 13 chr6 37594545 37594624 -111922413 + ID4 SINE ID 2 81 -2 2 871 765 139 6 19 chr6 37594853 37595014 -111922023 + GA-rich Low_complexity Low_complexity 1 159 0 2 871 194 62 0 30 chr6 37595109 37595142 -111921895 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 2 871 246 81 0 0 chr6 37595289 37595326 -111921711 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 2 871 238 236 0 119 chr6 37596407 37596424 -111920613 + B4A SINE B4 81 85 -207 2 871 514 169 8 48 chr6 37596424 37596548 -111920489 + PB1D9 SINE Alu 2 120 0 2 871 556 219 15 32 chr6 37596594 37596738 -111920299 - B1_Mur1 SINE Alu -6 143 3 2 871 192 200 0 0 chr6 37596769 37596814 -111920223 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 871 1193 55 0 0 chr6 37597211 37597356 -111919681 + B1_Mus2 SINE Alu 2 146 -1 2 871 372 94 0 0 chr6 37597356 37597409 -111919628 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 2 871 23 0 0 0 chr6 37597631 37597654 -111919383 + AT_rich Low_complexity Low_complexity 1 23 0 2 871 1947 183 74 78 chr6 37597706 37598057 -111918980 + RMER5 LTR ERV1 1 343 -191 2 871 636 184 0 9 chr6 37598057 37598172 -111918865 - PB1D9 SINE Alu -5 115 2 2 871 1947 183 74 78 chr6 37598172 37598318 -111918719 + RMER5 LTR ERV1 344 496 -38 2 871 212 231 19 19 chr6 37598339 37598392 -111918645 + ID4_ SINE ID 5 57 -26 2 871 336 289 107 75 chr6 37598411 37598520 -111918517 - MER82 DNA MER2_type -252 401 284 2 871 1700 5 21 0 chr6 37598520 37598708 -111918329 + B2_Mm1a SINE B2 2 193 0 2 871 336 289 107 75 chr6 37598708 37598785 -111918252 - MER82 DNA MER2_type -370 283 209 2 871 363 289 18 77 chr6 37598785 37598954 -111918083 - RLTR14 LTR ERV1 0 382 224 2 871 24 0 0 0 chr6 37599214 37599238 -111917799 + AT_rich Low_complexity Low_complexity 1 24 0 2 871 1042 239 35 121 chr6 37599348 37599509 -111917528 + ORR1D2 LTR MaLR 1 151 -219 2 871 1213 112 6 6 chr6 37599509 37599689 -111917348 + B2_Mm2 SINE B2 2 181 -14 2 871 1042 239 35 121 chr6 37599689 37599932 -111917105 + ORR1D2 LTR MaLR 152 370 0 2 871 367 299 51 8 chr6 37599932 37600046 -111916991 - MER82 DNA MER2_type -534 119 1 2 871 578 234 86 14 chr6 37600286 37600425 -111916612 + RSINE1 SINE B4 4 152 -13 2 871 918 180 0 13 chr6 37600592 37600744 -111916293 + B1_Mur4 SINE Alu 1 150 0 2 871 3596 75 11 0 chr6 37600949 37601417 -111915620 - L1_Mus3 LINE L1 0 6638 6166 2 871 642 261 62 29 chr6 37601528 37601737 -111915300 + ID_B1 SINE B4 2 217 -7 2 871 582 15 0 0 chr6 37601737 37601804 -111915233 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 2 871 215 204 0 18 chr6 37601827 37601882 -111915155 + GA-rich Low_complexity Low_complexity 1 54 0 2 871 232 259 0 0 chr6 37602612 37602666 -111914371 + B1F2 SINE Alu 5 58 -91 2 871 345 230 0 181 chr6 37602661 37602799 -111914238 - RSINE1 SINE B4 -39 126 14 2 871 427 234 26 26 chr6 37603269 37603383 -111913654 + PB1D7 SINE Alu 7 120 0 2 871 476 237 21 0 chr6 37603565 37603662 -111913375 + B1_Mur1 SINE Alu 42 140 -9 2 871 1194 54 0 0 chr6 37603801 37603948 -111913089 - B1_Mm SINE Alu 0 147 1 2 871 358 326 0 0 chr6 37604219 37604317 -111912720 + ID_B1 SINE B4 80 177 -47 2 871 258 32 0 0 chr6 37605183 37605214 -111911823 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 871 921 242 9 28 chr6 37605214 37605431 -111911606 - ID_B1 SINE B4 -10 214 2 2 871 7912 112 15 19 chr6 37605465 37606687 -111910350 - L1_Mur2 LINE L1 -1235 4642 3426 2 871 6757 134 27 8 chr6 37606687 37607785 -111909252 + Lx2 LINE L1 5878 6996 -1 2 871 479 292 28 14 chr6 37608405 37608617 -111908420 + ID_B1 SINE B4 2 216 -8 2 871 195 42 0 0 chr6 37609374 37609398 -111907639 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 2 871 408 260 18 107 chr6 37609407 37609575 -111907462 + ID_B1 SINE B4 67 219 -5 2 871 723 131 24 24 chr6 37609452 37609577 -111907460 + B1_Mur4 SINE Alu 23 147 -3 2 871 1064 97 0 0 chr6 37610368 37610512 -111906525 - B1_Mus1 SINE Alu 0 148 5 2 871 288 222 99 0 chr6 37610866 37610947 -111906090 - B1_Mur2 SINE Alu -8 141 53 2 871 2686 181 74 4 chr6 37610947 37611036 -111906001 - RLTR20D LTR ERVK 0 568 479 2 871 342 0 0 0 chr6 37611036 37611074 -111905963 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 871 2686 181 74 4 chr6 37611074 37611510 -111905527 - RLTR20D LTR ERVK -90 478 7 2 871 4199 44 14 2 chr6 37611524 37612021 -111905016 - RLTR1C LTR ERV1 0 503 1 2 871 231 314 0 44 chr6 37612780 37612870 -111904167 - L1M5 LINE L1 -448 5676 5591 2 871 822 251 58 29 chr6 37613375 37613528 -111903509 + B3 SINE B2 1 161 -55 2 871 3381 43 2 0 chr6 37613528 37613923 -111903114 + MTA_Mm LTR MaLR 1 396 0 2 871 822 251 58 29 chr6 37613923 37613974 -111903063 + B3 SINE B2 162 211 -5 2 871 581 203 104 8 chr6 37614008 37614142 -111902895 + B1_Mur2 SINE Alu 2 148 -1 2 871 801 58 0 0 chr6 37614614 37614717 -111902320 + (TC)n Simple_repeat Simple_repeat 2 104 0 2 871 1153 76 0 0 chr6 37614717 37614862 -111902175 - B1_Mus1 SINE Alu -3 145 1 2 871 1350 241 84 29 chr6 37614864 37615210 -111901827 - MTEa LTR MaLR -5 374 10 2 871 519 279 22 14 chr6 37615443 37615581 -111901456 + RSINE1 SINE B4 2 140 -25 2 871 341 354 8 8 chr6 37616381 37616512 -111900525 + RCHARR1 DNA MER1_type 3 133 -841 2 871 960 152 0 0 chr6 37616512 37616657 -111900380 + B1_Mus1 SINE Alu 2 146 -2 2 871 479 205 0 23 chr6 37616713 37616757 -111900280 + polypurine Low_complexity Low_complexity 2 45 0 2 871 1045 122 6 3 chr6 37616757 37617109 -111899928 + (GAAA)n Simple_repeat Simple_repeat 1 353 0 2 871 479 205 0 23 chr6 37617109 37617193 -111899844 + polypurine Low_complexity Low_complexity 46 127 0 2 108 2489 232 55 118 chr6 37617196 37617847 -111899190 + RCHARR1 DNA MER1_type 124 751 -223 2 872 548 211 45 84 chr6 37617847 37618002 -111899035 + B1_Mur1 SINE Alu 1 149 0 2 872 2489 232 55 118 chr6 37618002 37618118 -111898919 + RCHARR1 DNA MER1_type 752 831 -143 2 872 1063 133 194 0 chr6 37618118 37618298 -111898739 - B3 SINE B2 0 216 2 2 872 2489 232 55 118 chr6 37618298 37618436 -111898601 + RCHARR1 DNA MER1_type 832 973 -1 2 872 358 277 74 39 chr6 37618521 37618724 -111898313 - RMER15 LTR ERVL -10 565 356 2 872 255 216 0 38 chr6 37619196 37619249 -111897788 - MER34-int LTR ERV1 -6778 1429 1379 2 872 626 181 116 16 chr6 37619916 37620045 -111896992 - B1_Mus1 SINE Alu -1 147 6 2 872 1152 69 0 7 chr6 37620148 37620294 -111896743 + B1_Mus2 SINE Alu 2 146 -1 2 872 437 274 137 0 chr6 37620363 37620480 -111896557 - ID_B1 SINE B4 -12 212 80 2 872 216 0 0 0 chr6 37620508 37620532 -111896505 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 872 565 260 33 33 chr6 37620536 37620687 -111896350 - RSINE1 SINE B4 -12 153 3 2 872 279 223 384 5 chr6 37620688 37620886 -111896151 + RCHARR1 DNA MER1_type 4 276 -698 2 872 1773 176 38 87 chr6 37621002 37621395 -111895642 - ORR1C1 LTR MaLR -4 374 1 2 872 1984 170 64 0 chr6 37621427 37621786 -111895251 + ORR1B1 LTR MaLR 1 382 -12 2 872 1350 144 4 78 chr6 37621856 37622127 -111894910 + ORR1A4 LTR MaLR 1 251 -78 2 872 1987 133 9 3 chr6 37622127 37622443 -111894594 + ORR1A3 LTR MaLR 1 318 -8 2 872 496 91 66 33 chr6 37622435 37622526 -111894511 + ORR1A4 LTR MaLR 236 329 0 2 872 261 296 32 73 chr6 37622621 37622745 -111894292 - PB1 SINE Alu -7 120 2 2 872 540 269 78 47 chr6 37622747 37622938 -111894099 - B3A SINE B2 -1 197 1 2 872 762 50 0 0 chr6 37622991 37623090 -111893947 - ORR1A3 LTR MaLR 0 329 231 2 872 2099 89 9 60 chr6 37623092 37623428 -111893609 + ORR1A2 LTR MaLR 1 319 -8 2 872 998 181 74 9 chr6 37623427 37623644 -111893393 - ORR1A3 LTR MaLR -95 231 1 2 872 1676 26 5 0 chr6 37623866 37624058 -111892979 + B2_Mm1t SINE B2 1 193 0 2 872 756 218 0 33 chr6 37624080 37624232 -111892805 - B1_Mur3 SINE Alu -1 148 2 2 872 2349 251 83 109 chr6 37624524 37625484 -111891553 + ORR1C2-int LTR MaLR 94 1024 -346 2 872 246 62 0 0 chr6 37625484 37625516 -111891521 + (ATTTG)n Simple_repeat Simple_repeat 2 33 0 3 872 764 212 15 0 chr6 37625516 37625653 -111891384 - B1_Mur3 SINE Alu -10 139 1 3 872 2349 251 83 109 chr6 37625653 37625864 -111891173 + ORR1C2-int LTR MaLR 1025 1233 -137 2 872 867 20 0 0 chr6 37625918 37626019 -111891018 + (TC)n Simple_repeat Simple_repeat 1 101 0 3 872 561 264 0 43 chr6 37626019 37626181 -111890856 + ORR1C2 LTR MaLR 230 384 0 2 872 22 0 0 0 chr6 37626214 37626236 -111890801 + AT_rich Low_complexity Low_complexity 1 22 0 3 872 1040 211 154 60 chr6 37626700 37626964 -111890073 - MTD LTR MaLR 0 419 112 3 872 1069 45 0 43 chr6 37626964 37627104 -111889933 + B1_Mus2 SINE Alu 2 135 -12 3 872 1135 62 19 0 chr6 37627105 37627265 -111889772 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 3 872 1040 211 154 60 chr6 37627265 37627316 -111889721 - MTD LTR MaLR -308 111 72 3 872 2289 221 49 50 chr6 37627316 37627913 -111889124 - MTC-int LTR MaLR -257 1001 406 3 872 364 200 37 24 chr6 37629090 37629172 -111887865 - LSU-rRNA_Hsa rRNA rRNA -2392 2643 2561 3 872 885 139 23 0 chr6 37629233 37629405 -111887632 + CT-rich Low_complexity Low_complexity 2 177 0 3 872 774 75 0 0 chr6 37629423 37629529 -111887508 - B1_Mus2 SINE Alu 0 147 42 3 872 290 106 68 96 chr6 37629466 37629539 -111887498 - RLTR25B LTR ERVK -519 509 439 3 872 234 152 0 0 chr6 37629552 37629611 -111887426 + C-rich Low_complexity Low_complexity 121 179 0 3 872 363 109 0 0 chr6 37629614 37629669 -111887368 - PB1D9 SINE Alu -65 55 1 3 872 1264 104 0 58 chr6 37630805 37631010 -111886027 + B2_Mm2 SINE B2 3 195 0 3 872 535 223 11 57 chr6 37631139 37631315 -111885722 - RNLTR23 LTR ERVK 0 642 475 3 872 2011 82 9 78 chr6 37631878 37632223 -111884814 + ORR1A4 LTR MaLR 1 321 -8 3 872 397 362 39 27 chr6 37632568 37632994 -111884043 + RLTR14-int LTR ERV1 2538 3175 -4603 3 872 305 349 42 34 chr6 37633491 37633755 -111883282 + MuRRS4-int LTR ERV1 2331 2596 -2467 3 872 500 317 75 62 chr6 37633919 37634329 -111882708 + RLTR14-int LTR ERV1 2484 2704 -2613 3 872 672 102 0 0 chr6 37634803 37634901 -111882136 + (GA)n Simple_repeat Simple_repeat 2 99 0 3 872 251 297 75 61 chr6 37634949 37635096 -111881941 + RLTR14-int LTR ERV1 3725 3873 -1190 3 872 22 0 0 0 chr6 37635625 37635647 -111881390 + AT_rich Low_complexity Low_complexity 1 22 0 3 872 1059 93 110 6 chr6 37635835 37635998 -111881039 + B2_Mm2 SINE B2 2 181 -14 3 872 234 227 0 0 chr6 37637199 37637243 -111879794 + (CGG)n Simple_repeat Simple_repeat 3 46 0 3 872 2581 126 44 45 chr6 37637446 37637996 -111879041 - RMER6C LTR ERVK 0 690 142 3 872 245 105 0 0 chr6 37637994 37638032 -111879005 - RMER6C LTR ERVK -680 40 3 3 872 611 229 172 80 chr6 37638784 37639121 -111877916 - RLTR9A LTR ERVK 0 368 1 3 872 26 30 0 0 chr6 37640135 37640168 -111876869 + AT_rich Low_complexity Low_complexity 1 33 0 3 872 1390 190 25 56 chr6 37641055 37641263 -111875774 - MTC LTR MaLR 0 421 227 3 872 7496 16 2 0 chr6 37641263 37642083 -111874954 - RLTR13B2 LTR ERVK 0 822 1 3 872 1390 190 25 56 chr6 37642083 37642197 -111874840 - MTC LTR MaLR -195 226 109 3 872 3153 169 27 3 chr6 37642368 37642954 -111874083 + RLTR33 LTR ERVK 1 600 -78 3 872 1591 195 68 38 chr6 37642960 37643452 -111873585 - RLTR20A LTR ERVK -3 560 38 3 872 431 189 11 43 chr6 37643457 37643551 -111873486 + RLTR19C LTR ERVK 415 505 -1 3 872 25 0 0 0 chr6 37643563 37643588 -111873449 + AT_rich Low_complexity Low_complexity 1 25 0 3 872 471 135 67 11 chr6 37643716 37643806 -111873231 - MTC LTR MaLR -326 95 1 3 872 219 36 0 0 chr6 37643988 37644016 -111873021 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3 872 603 182 79 8 chr6 37644016 37644143 -111872894 - B1_Mus1 SINE Alu -7 141 6 3 872 25 0 0 0 chr6 37644204 37644229 -111872808 + AT_rich Low_complexity Low_complexity 1 25 0 3 872 676 250 43 14 chr6 37644427 37644634 -111872403 - RMER5 LTR ERV1 0 534 322 3 872 724 180 15 112 chr6 37644648 37644854 -111872183 + ORR1C2 LTR MaLR 5 190 -194 3 872 1014 252 156 0 chr6 37644872 37645174 -111871863 - ORR1D2 LTR MaLR -20 350 2 3 872 475 324 6 40 chr6 37645298 37645475 -111871562 - B4A SINE B4 -117 175 5 3 872 3013 32 3 0 chr6 37645571 37645916 -111871121 - ORR1A1 LTR MaLR 0 346 1 3 872 230 227 89 51 chr6 37646025 37646104 -111870933 - L1MB1 LINE L1 -264 6048 5967 3 872 734 211 8 191 chr6 37646180 37646432 -111870605 + B3 SINE B2 5 210 -6 3 872 288 290 20 10 chr6 37646518 37646619 -111870418 - L1MB1 LINE L1 -305 5884 5783 3 872 249 159 0 0 chr6 37646624 37646668 -111870369 + CT-rich Low_complexity Low_complexity 2 45 0 3 872 976 241 14 23 chr6 37646764 37646981 -111870056 - B3 SINE B2 -1 215 1 3 872 394 260 32 0 chr6 37646991 37647114 -111869923 - L1M3 LINE L1 -3772 2368 2242 3 872 571 271 8 0 chr6 37647327 37647456 -111869581 - ID_B1 SINE B4 -66 158 29 3 872 265 139 0 0 chr6 37647504 37647547 -111869490 + B3A SINE B2 2 44 -154 3 872 302 276 71 43 chr6 37647554 37647694 -111869343 - RLTR41 LTR ERV1 0 446 303 3 872 564 211 67 109 chr6 37648021 37648165 -111868872 + B3 SINE B2 56 201 -15 3 872 347 0 23 0 chr6 37648165 37648208 -111868829 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 3 872 564 211 67 109 chr6 37648208 37648228 -111868809 + B3 SINE B2 202 213 -3 3 872 22 35 0 0 chr6 37648243 37648272 -111868765 + AT_rich Low_complexity Low_complexity 1 29 0 3 872 451 266 251 73 chr6 37648649 37648942 -111868095 - MER31B LTR ERV1 -103 363 19 3 872 736 284 62 14 chr6 37649034 37649245 -111867792 + ID_B1 SINE B4 4 224 0 3 872 500 298 84 40 chr6 37649245 37649472 -111867565 + B4 SINE B4 10 246 -46 3 872 375 214 133 0 chr6 37649526 37649624 -111867413 - B1_Mm SINE Alu -36 111 1 3 872 189 74 0 0 chr6 37649693 37649720 -111867317 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 872 1131 89 0 0 chr6 37650206 37650352 -111866685 + B1_Mus2 SINE Alu 2 147 0 3 872 309 26 0 0 chr6 37650368 37650406 -111866631 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3 872 280 281 10 20 chr6 37650495 37650593 -111866444 - L1ME3A LINE L1 -222 5951 5855 3 872 923 246 97 32 chr6 37650611 37650970 -111866067 - MT2B LTR ERVL -1 600 84 3 872 2719 173 57 11 chr6 37651092 37651181 -111865856 - RLTR20D LTR ERVK 0 568 479 3 872 345 47 0 0 chr6 37651181 37651224 -111865813 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 872 2719 173 57 11 chr6 37651224 37651677 -111865360 - RLTR20D LTR ERVK -90 478 3 3 872 4395 178 51 46 chr6 37651682 37653433 -111863604 - MYSERV16_I-int LTR ERVK -6 2836 354 3 872 902 131 48 0 chr6 37653434 37653579 -111863458 + B2_Mm2 SINE B2 1 152 -43 3 872 212 0 36 0 chr6 37653579 37653607 -111863430 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 872 439 133 0 13 chr6 37653615 37653691 -111863346 - MYSERV16_I-int LTR ERVK -1958 368 294 3 872 945 220 14 57 chr6 37653689 37653969 -111863068 - RMER3D-int LTR ERVK -1464 1378 1111 3 872 534 140 112 0 chr6 37654266 37654373 -111862664 - RMER20B LTR ERVK -508 119 1 3 872 408 171 0 26 chr6 37654373 37654451 -111862586 - MT2B LTR ERVL -457 76 1 3 872 239 293 0 0 chr6 37654555 37654630 -111862407 - L1ME3A LINE L1 -693 5480 5406 3 872 413 265 42 17 chr6 37654972 37655091 -111861946 + B4A SINE B4 1 122 -170 3 872 423 0 0 0 chr6 37655109 37655156 -111861881 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 3 872 481 303 101 5 chr6 37656188 37656377 -111860660 - MER34A LTR ERV1 -363 208 2 3 872 843 158 16 0 chr6 37656480 37656607 -111860430 - B1_Mur3 SINE Alu -19 130 2 3 872 286 286 0 0 chr6 37656629 37656692 -111860345 + ID4 SINE ID 2 64 -19 3 872 4694 120 46 57 chr6 37657171 37658092 -111858945 - RLTR13C1 LTR ERVK 0 983 73 3 872 264 210 81 69 chr6 37658093 37658162 -111858875 + B1_Mur2 SINE Alu 62 136 -13 3 872 378 0 0 0 chr6 37658162 37658204 -111858833 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 3 872 264 210 81 69 chr6 37658204 37658221 -111858816 + B1_Mur2 SINE Alu 137 149 0 3 872 1106 228 0 0 chr6 37658516 37658722 -111858315 + B3 SINE B2 5 210 -6 3 872 280 302 64 51 chr6 37658726 37658883 -111858154 + MER2 DNA MER2_type 56 214 -131 3 872 282 127 191 0 chr6 37659042 37659105 -111857932 + MER2 DNA MER2_type 202 276 -69 3 872 1072 251 25 16 chr6 37659106 37659349 -111857688 + B4A SINE B4 8 252 -40 3 872 2386 108 84 56 chr6 37659615 37660077 -111856960 + IAPLTR2_Mm LTR ERVK 1 475 0 3 872 2316 137 17 78 chr6 37660160 37660572 -111856465 - ORR1B1 LTR MaLR -3 391 5 3 872 692 309 65 0 chr6 37660721 37661015 -111856022 + L1MA9 LINE L1 5052 5364 -776 3 872 1074 64 57 0 chr6 37661015 37661156 -111855881 + B1_Mur4 SINE Alu 2 150 0 3 872 330 268 35 57 chr6 37661156 37661316 -111855721 + L1MA9 LINE L1 5371 5500 -683 3 872 377 250 0 0 chr6 37661336 37661420 -111855617 + RSINE1 SINE B4 38 121 -44 3 872 216 0 0 0 chr6 37661477 37661501 -111855536 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 872 315 0 0 0 chr6 37661501 37661535 -111855502 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 872 373 279 148 24 chr6 37661549 37661746 -111855291 + L1MA9 LINE L1 5593 5818 -473 3 872 306 265 137 39 chr6 37661759 37661861 -111855176 + PB1D10 SINE Alu 6 117 0 3 872 486 241 49 42 chr6 37662069 37662212 -111854825 + B1F SINE Alu 6 149 0 3 872 594 249 39 3 chr6 37662229 37662408 -111854629 + L1MA9 LINE L1 6043 6224 -88 3 872 252 86 0 0 chr6 37662409 37662444 -111854593 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 872 41 21 0 0 chr6 37662493 37662541 -111854496 + AT_rich Low_complexity Low_complexity 1 48 0 3 872 309 169 0 0 chr6 37662541 37662600 -111854437 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 872 325 244 0 63 chr6 37662780 37662871 -111854166 - ID4 SINE ID -60 92 7 3 872 402 108 0 0 chr6 37663300 37663374 -111853663 + (TTTG)n Simple_repeat Simple_repeat 1 74 0 3 872 1047 64 43 0 chr6 37663375 37663515 -111853522 - B1_Mus1 SINE Alu -1 147 2 3 872 1008 185 107 76 chr6 37663530 37663858 -111853179 - RLTR14 LTR ERV1 -41 341 4 3 872 454 219 160 0 chr6 37663993 37664112 -111852925 + B1_Mur2 SINE Alu 11 148 -1 3 872 180 0 0 0 chr6 37664796 37664816 -111852221 + (G)n Simple_repeat Simple_repeat 1 20 0 3 872 315 0 0 0 chr6 37664951 37664986 -111852051 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 872 2219 169 31 24 chr6 37665631 37666049 -111850988 + MTC LTR MaLR 1 421 0 3 872 2877 87 15 5 chr6 37666144 37666536 -111850501 - MTA_Mm LTR MaLR 0 396 1 3 872 8135 72 4 67 chr6 37666536 37667707 -111849330 - MTA_Mm-int LTR MaLR 0 1098 1 3 872 3083 78 2 5 chr6 37667707 37668104 -111848933 - MTA_Mm LTR MaLR 0 396 1 3 872 248 302 0 0 chr6 37668258 37668273 -111848764 - B1F2 SINE Alu -79 70 8 3 872 253 229 0 0 chr6 37668273 37668321 -111848716 - ID_B1 SINE B4 -88 136 89 3 872 593 208 17 0 chr6 37668484 37668604 -111848433 + B1_Mur1 SINE Alu 28 149 0 4 872 242 244 0 12 chr6 37668606 37668689 -111848348 + GA-rich Low_complexity Low_complexity 1 82 0 4 872 30 0 0 0 chr6 37669080 37669110 -111847927 + AT_rich Low_complexity Low_complexity 1 30 0 4 872 253 411 9 0 chr6 37669131 37669243 -111847794 - PB1D7 SINE Alu -7 113 1 4 872 1458 215 94 6 chr6 37669392 37669474 -111847563 - ORR1D1 LTR MaLR 0 374 294 4 872 1879 85 112 64 chr6 37669474 37669788 -111847249 - ORR1A4 LTR MaLR 0 329 1 4 872 1458 215 94 6 chr6 37669788 37670047 -111846990 - ORR1D1 LTR MaLR -81 293 4 4 872 3506 181 144 16 chr6 37670050 37670184 -111846853 - ORR1D1-int LTR MaLR 0 1370 1229 4 872 1895 169 19 43 chr6 37670184 37670604 -111846433 + RMER17C LTR ERVK 1 410 0 4 872 3506 181 144 16 chr6 37670604 37671295 -111845742 - ORR1D1-int LTR MaLR -142 1228 434 4 872 185 0 0 39 chr6 37671295 37671321 -111845716 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 872 3506 181 144 16 chr6 37671321 37671349 -111845688 - ORR1D1-int LTR MaLR -937 433 408 4 872 589 243 116 98 chr6 37672069 37672293 -111844744 - ORR1D1-int LTR MaLR -944 426 199 4 872 1166 57 0 0 chr6 37672655 37672795 -111844242 + B1_Mus1 SINE Alu 1 140 -8 4 872 732 210 18 0 chr6 37672837 37673004 -111844033 - ORR1D1-int LTR MaLR -1160 210 41 4 872 309 259 29 32 chr6 37673098 37673245 -111843792 + MLT1A1 LTR MaLR 294 447 -20 4 872 878 179 16 21 chr6 37674153 37674341 -111842696 - B3 SINE B2 0 216 30 4 872 454 283 15 98 chr6 37674305 37674505 -111842532 + MTE2a LTR MaLR 48 230 -149 4 872 630 294 81 53 chr6 37674505 37674695 -111842342 + ORR1D2 LTR MaLR 1 201 -169 4 872 1229 61 0 0 chr6 37674695 37674842 -111842195 - B1_Mus2 SINE Alu 0 147 1 4 872 630 294 81 53 chr6 37674842 37674978 -111842059 + ORR1D2 LTR MaLR 202 341 -29 4 872 252 0 0 0 chr6 37674978 37675006 -111842031 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 872 630 294 81 53 chr6 37675006 37675037 -111842000 + ORR1D2 LTR MaLR 342 369 -1 4 872 496 209 18 45 chr6 37675037 37675179 -111841858 + MTE2a LTR MaLR 243 378 -1 4 872 245 51 0 25 chr6 37675562 37675602 -111841435 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 872 631 215 8 0 chr6 37675602 37675723 -111841314 - B1_Mur2 SINE Alu -25 124 3 4 872 337 193 0 88 chr6 37675644 37675735 -111841302 - MT2B LTR ERVL -364 237 155 4 872 782 306 100 44 chr6 37675962 37676441 -111840596 - L1_Mur3 LINE L1 -59 5821 5316 4 872 715 145 81 68 chr6 37676445 37676593 -111840444 - B1_Mur4 SINE Alu 0 150 1 4 872 360 203 0 0 chr6 37676604 37676673 -111840364 - ID_B1 SINE B4 -75 149 81 4 872 225 190 68 17 chr6 37676678 37676737 -111840300 - L1M2 LINE L1 -937 5360 5299 4 872 1127 51 0 0 chr6 37676788 37676926 -111840111 - B1_Mus2 SINE Alu -9 138 1 4 872 872 281 53 90 chr6 37676955 37677467 -111839570 - L1M2 LINE L1 -868 5275 4719 4 872 251 354 0 0 chr6 37677512 37677594 -111839443 - ID4 SINE ID -1 82 1 4 872 456 223 8 29 chr6 37677638 37677759 -111839278 - PB1D7 SINE Alu -1 119 5 4 872 243 235 0 100 chr6 37677698 37677788 -111839249 - B4 SINE B4 -146 146 66 4 872 250 320 39 20 chr6 37677782 37677884 -111839153 - PB1D7 SINE Alu 0 120 17 4 872 223 182 0 0 chr6 37678005 37678049 -111838988 + (TTA)n Simple_repeat Simple_repeat 2 45 0 4 872 244 272 54 0 chr6 37678049 37678141 -111838896 - Lx6 LINE L1 -26 7434 7338 4 872 1417 183 30 17 chr6 37678486 37678786 -111838251 - ORR1D1 LTR MaLR -14 360 57 4 872 1455 161 118 55 chr6 37678791 37678982 -111838055 + RMER17C LTR ERVK 6 180 -230 4 872 591 40 0 0 chr6 37678982 37679056 -111837981 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 872 1455 161 118 55 chr6 37679056 37679245 -111837792 + RMER17C LTR ERVK 181 410 0 4 872 383 145 0 0 chr6 37679245 37679306 -111837731 - ORR1D1 LTR MaLR -313 61 1 4 872 351 146 0 0 chr6 37679689 37679744 -111837293 + B1_Mus2 SINE Alu 13 67 -80 4 872 823 173 206 12 chr6 37679764 37679934 -111837103 + B3 SINE B2 2 204 -12 4 872 30 27 0 0 chr6 37679934 37679971 -111837066 + AT_rich Low_complexity Low_complexity 1 37 0 4 872 554 265 73 20 chr6 37679981 37680131 -111836906 + RSINE1 SINE B4 3 160 -5 4 872 385 316 17 9 chr6 37680184 37680299 -111836738 + PB1D10 SINE Alu 1 116 -1 4 872 507 319 7 0 chr6 37680309 37680450 -111836587 + ID_B1 SINE B4 2 143 -81 4 872 543 56 0 0 chr6 37680464 37680535 -111836502 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 872 531 0 0 0 chr6 37680775 37680834 -111836203 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 872 298 225 24 24 chr6 37680923 37681005 -111836032 + RMER10B LTR ERVL 289 370 -28 4 872 412 319 143 20 chr6 37681077 37681378 -111835659 + Charlie2a DNA MER1_type 183 520 -2341 4 872 495 278 128 37 chr6 37681391 37681578 -111835459 + MER21B LTR ERV1 460 663 -200 4 872 1134 37 15 0 chr6 37681646 37681780 -111835257 + B1_Mm SINE Alu 3 138 -9 4 872 279 0 0 0 chr6 37681780 37681811 -111835226 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 872 28 29 0 0 chr6 37681864 37681899 -111835138 + AT_rich Low_complexity Low_complexity 1 35 0 4 872 240 65 0 0 chr6 37681927 37681958 -111835079 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 4 872 927 142 17 0 chr6 37681959 37682135 -111834902 + CT-rich Low_complexity Low_complexity 2 180 0 4 872 519 219 32 96 chr6 37682908 37683059 -111833978 + RMER5 LTR ERV1 328 478 -56 4 872 1201 62 0 0 chr6 37683059 37683205 -111833832 + B1_Mus2 SINE Alu 2 147 0 4 872 519 219 32 96 chr6 37683205 37683240 -111833797 + RMER5 LTR ERV1 479 502 -32 4 872 1172 68 0 0 chr6 37683414 37683561 -111833476 - B1_Mm SINE Alu 0 147 1 4 872 333 265 0 0 chr6 37683563 37683646 -111833391 - PB1D10 SINE Alu -34 83 1 4 872 718 194 14 0 chr6 37683705 37683844 -111833193 + B1_Mur1 SINE Alu 9 149 0 4 872 747 0 0 0 chr6 37683870 37683953 -111833084 + (GGGAA)n Simple_repeat Simple_repeat 3 85 0 4 872 217 0 61 0 chr6 37684065 37684098 -111832939 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 872 716 233 88 26 chr6 37684098 37684292 -111832745 - ID_B1 SINE B4 -9 215 10 4 872 1049 266 108 35 chr6 37684357 37684878 -111832159 + Charlie2a DNA MER1_type 1832 2390 -471 4 872 273 57 0 0 chr6 37685045 37685080 -111831957 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 872 387 194 0 0 chr6 37685121 37685219 -111831818 + (TATG)n Simple_repeat Simple_repeat 2 99 0 4 872 736 218 28 7 chr6 37685222 37685365 -111831672 - B1_Mur1 SINE Alu -1 148 3 4 872 383 262 55 27 chr6 37686062 37686172 -111830865 - RSINE1 SINE B4 -29 136 24 4 872 697 225 0 0 chr6 37686222 37686364 -111830673 + B1_Mur1 SINE Alu 8 149 0 4 872 600 305 130 49 chr6 37686359 37686666 -111830371 - MTB_Mm LTR MaLR -56 351 20 4 872 1843 161 101 0 chr6 37688028 37688375 -111828662 + ORR1C2 LTR MaLR 1 382 -2 4 872 449 222 244 8 chr6 37688442 37688569 -111828468 + RSINE1 SINE B4 3 159 -6 4 872 28 0 0 0 chr6 37688569 37688597 -111828440 + AT_rich Low_complexity Low_complexity 1 28 0 4 872 398 228 88 16 chr6 37688612 37688737 -111828300 + ID_B1 SINE B4 91 224 0 4 872 427 216 0 17 chr6 37688739 37688857 -111828180 + GA-rich Low_complexity Low_complexity 2 117 0 4 872 905 262 149 16 chr6 37689092 37689460 -111827577 - RMER5 LTR ERV1 0 534 118 4 872 326 260 79 50 chr6 37689454 37689555 -111827482 - ID_B1 SINE B4 -46 178 75 4 872 564 177 0 0 chr6 37689593 37689689 -111827348 + B1_Mur4 SINE Alu 10 105 -45 4 872 318 238 0 59 chr6 37689758 37689843 -111827194 + ID_B1 SINE B4 142 221 -3 4 872 410 261 238 5 chr6 37689911 37690104 -111826933 + MTEb LTR MaLR 77 314 -65 4 872 442 267 156 17 chr6 37690211 37690390 -111826647 + ID_B1 SINE B4 2 205 -19 4 872 2390 100 137 54 chr6 37690390 37690835 -111826202 + RLTR45 LTR ERVK 1 482 0 4 872 654 104 0 0 chr6 37690846 37690942 -111826095 + (GA)n Simple_repeat Simple_repeat 2 97 0 4 872 1455 141 257 50 chr6 37691076 37691415 -111825622 + RLTR9E LTR ERVK 1 409 0 4 872 2060 197 22 35 chr6 37691416 37692090 -111824947 + ETnERV-int LTR ERVK 2 732 -2582 4 872 492 125 12 0 chr6 37692103 37692183 -111824854 - RLTR9B2 LTR ERVK -339 81 1 4 872 257 290 43 0 chr6 37692395 37692488 -111824549 - MLT1G LTR MaLR -5 586 490 4 872 255 218 18 0 chr6 37692542 37692597 -111824440 - ID_B1 SINE B4 -17 207 152 4 872 552 189 26 43 chr6 37692606 37692722 -111824315 - ID_B1 SINE B4 -24 200 87 4 872 307 357 0 0 chr6 37692743 37692841 -111824196 - RSINE1 SINE B4 -67 98 1 4 872 450 0 0 0 chr6 37692913 37692963 -111824074 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 872 306 0 0 0 chr6 37692963 37692996 -111824041 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 872 451 325 30 6 chr6 37693358 37693525 -111823512 + ID_B1 SINE B4 2 172 -52 4 872 473 243 0 0 chr6 37693574 37693677 -111823360 + PB1D9 SINE Alu 3 105 -15 4 872 270 160 0 0 chr6 37693688 37693738 -111823299 + (CAA)n Simple_repeat Simple_repeat 2 51 0 4 872 192 77 0 0 chr6 37693738 37693764 -111823273 + (ATG)n Simple_repeat Simple_repeat 2 27 0 4 872 21 36 0 0 chr6 37693783 37693811 -111823226 + AT_rich Low_complexity Low_complexity 1 28 0 4 872 206 174 0 21 chr6 37694143 37694190 -111822847 + GA-rich Low_complexity Low_complexity 3 48 0 4 872 776 125 0 8 chr6 37694211 37694340 -111822697 + (GAA)n Simple_repeat Simple_repeat 2 129 0 4 872 40 79 0 0 chr6 37694542 37694631 -111822406 + AT_rich Low_complexity Low_complexity 1 89 0 4 872 722 195 26 13 chr6 37694776 37694932 -111822105 - B3 SINE B2 0 216 59 4 872 296 274 14 0 chr6 37695001 37695074 -111821963 + GA-rich Low_complexity Low_complexity 2 75 0 4 872 411 299 102 0 chr6 37695813 37695950 -111821087 + B4A SINE B4 79 229 -63 4 872 751 186 43 0 chr6 37695950 37696090 -111820947 + B1_Mus2 SINE Alu 2 147 0 4 872 1328 92 43 0 chr6 37696101 37696285 -111820752 + B2_Mm2 SINE B2 1 192 -3 4 872 311 267 0 32 chr6 37696475 37696568 -111820469 + RSINE1 SINE B4 59 148 -17 4 872 396 0 0 0 chr6 37696580 37696624 -111820413 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 872 874 218 44 5 chr6 37696658 37696861 -111820176 - B3 SINE B2 -5 211 1 4 872 1717 129 272 49 chr6 37697377 37697825 -111819212 - RLTR6_Mm LTR ERV1 -70 584 37 5 872 180 0 0 0 chr6 37698611 37698631 -111818406 + (T)n Simple_repeat Simple_repeat 1 20 0 5 872 1541 185 221 17 chr6 37699011 37699368 -111817669 - RLTR23 LTR ERV1 0 430 1 5 872 315 122 0 0 chr6 37699512 37699561 -111817476 + (TTG)n Simple_repeat Simple_repeat 2 50 0 5 872 263 279 35 0 chr6 37699570 37699656 -111817381 - B1F SINE Alu -16 133 45 5 872 239 250 55 14 chr6 37699738 37699811 -111817226 - MurSatRep1 Unknown Unknown -1841 296 221 5 872 1752 138 6 139 chr6 37699835 37700308 -111816729 - RMER17C LTR ERVK 0 410 1 5 872 298 212 148 78 chr6 37700448 37700576 -111816461 + RSINE1 SINE B4 11 147 -18 5 872 469 261 129 14 chr6 37700854 37701053 -111815984 - B3A SINE B2 0 216 1 5 872 1192 48 0 7 chr6 37701556 37701702 -111815335 + B1_Mus1 SINE Alu 3 147 -1 5 872 252 0 93 0 chr6 37701706 37701749 -111815288 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 5 872 636 216 126 70 chr6 37702079 37702238 -111814799 - B3 SINE B2 -3 213 43 5 872 1578 37 11 5 chr6 37702238 37702429 -111814608 - B2_Mm2 SINE B2 -2 193 2 5 872 636 216 126 70 chr6 37702429 37702468 -111814569 - B3 SINE B2 -174 42 4 5 872 499 316 31 6 chr6 37702628 37702787 -111814250 + RSINE1 SINE B4 3 165 0 5 872 299 294 15 80 chr6 37703573 37703710 -111813327 + RMER15 LTR ERVL 301 428 -147 5 872 523 194 0 0 chr6 37703711 37703804 -111813233 + MTD LTR MaLR 1 93 -326 5 872 977 111 112 41 chr6 37704013 37704051 -111812986 + RMER4B LTR ERVK 1 43 -542 5 872 1008 130 49 38 chr6 37704051 37704235 -111812802 + B2_Mm2 SINE B2 1 186 -9 5 872 977 111 112 41 chr6 37704235 37704393 -111812644 + RMER4B LTR ERVK 44 211 -374 5 872 286 157 0 0 chr6 37704407 37704458 -111812579 + RLTR14 LTR ERV1 321 371 -11 5 872 2857 105 25 88 chr6 37704458 37704971 -111812066 - RLTR45 LTR ERVK 0 482 2 5 872 1014 206 14 0 chr6 37704989 37705198 -111811839 + RMER15 LTR ERVL 364 575 0 5 872 302 211 26 26 chr6 37705226 37705304 -111811733 - ID_B1 SINE B4 -1 223 146 5 872 208 80 0 74 chr6 37705353 37705407 -111811630 + T-rich Low_complexity Low_complexity 4 53 0 5 872 180 0 0 0 chr6 37705417 37705437 -111811600 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 872 992 24 0 0 chr6 37705439 37705564 -111811473 - B1_Mus1 SINE Alu -6 142 18 5 872 5515 97 67 1 chr6 37705603 37706399 -111810638 - Lx2 LINE L1 -464 6533 5686 5 872 273 57 0 0 chr6 37706399 37706434 -111810603 + (T)n Simple_repeat Simple_repeat 1 35 0 5 872 469 163 36 58 chr6 37706434 37706571 -111810466 - RMER17C LTR ERVK -135 275 142 5 872 2852 128 22 87 chr6 37706575 37707009 -111810028 - Lx2 LINE L1 -187 5696 5297 5 872 1130 83 7 0 chr6 37707009 37707153 -111809884 - B1_Mm SINE Alu -1 146 2 5 872 2852 128 22 87 chr6 37707153 37707258 -111809779 - Lx2 LINE L1 -587 5296 5192 5 872 6206 88 63 1 chr6 37707254 37708848 -111808189 - L1VL4 LINE L1 -1708 1851 159 5 872 538 324 20 7 chr6 37708852 37709001 -111808036 - ID_B1 SINE B4 -73 151 1 5 872 393 291 12 81 chr6 37709009 37709170 -111807867 + Lx8 LINE L1 6789 6938 -535 5 872 350 235 6 57 chr6 37709285 37709434 -111807603 + PB1D10 SINE Alu 2 144 -5 5 872 222 248 87 162 chr6 37709434 37709458 -111807579 + B4A SINE B4 87 246 -46 5 872 554 94 0 74 chr6 37709458 37709607 -111807430 + GA-rich Low_complexity Low_complexity 3 140 0 5 872 297 283 25 94 chr6 37709634 37709794 -111807243 + RMER15 LTR ERVL 1 149 -426 5 872 643 307 49 49 chr6 37709800 37710067 -111806970 + RMER15 LTR ERVL 273 539 -36 5 872 430 304 50 7 chr6 37710203 37710342 -111806695 + ID_B1 SINE B4 80 224 0 5 872 1161 75 7 0 chr6 37710362 37710508 -111806529 + B1_Mus1 SINE Alu 2 148 0 5 872 514 293 85 7 chr6 37710662 37710803 -111806234 + RSINE1 SINE B4 4 155 -10 5 872 1311 7 0 0 chr6 37710965 37711112 -111805925 + B1_Mus2 SINE Alu 1 147 0 5 872 348 24 0 0 chr6 37711112 37711153 -111805884 + (A)n Simple_repeat Simple_repeat 1 41 0 5 872 459 324 21 49 chr6 37711172 37711315 -111805722 + RSINE1 SINE B4 25 163 -2 5 872 256 113 57 0 chr6 37711644 37711697 -111805340 + GA-rich Low_complexity Low_complexity 3 58 0 5 872 675 214 148 6 chr6 37712280 37712449 -111804588 - B3A SINE B2 -5 193 1 5 872 497 254 21 35 chr6 37712534 37712677 -111804360 - ID_B1 SINE B4 -4 220 80 5 872 384 260 76 82 chr6 37712690 37712874 -111804163 - MER67D LTR ERV1 -226 288 106 5 872 237 269 11 103 chr6 37712934 37713021 -111804016 - ID4_ SINE ID -3 80 2 5 872 511 236 86 11 chr6 37713154 37713346 -111803691 - MTD LTR MaLR 0 419 158 5 872 1507 287 54 2 chr6 37713579 37714040 -111802997 + RLTR19 LTR ERVK 15 499 0 5 872 1799 139 103 3 chr6 37714131 37714471 -111802566 - RLTR14 LTR ERV1 -6 376 3 5 872 303 38 18 36 chr6 37714923 37714978 -111802059 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 872 240 250 54 27 chr6 37715092 37715166 -111801871 - B1F2 SINE Alu -29 120 45 5 872 1651 125 193 15 chr6 37715136 37715525 -111801512 - RMER4A LTR ERVK -8 458 1 5 872 11959 133 36 29 chr6 37715526 37717266 -111799771 - MurERV4-int LTR ERVK 0 5260 3487 5 872 1170 61 170 0 chr6 37717266 37717431 -111799606 - B2_Mm1t SINE B2 0 193 1 5 872 11959 133 36 29 chr6 37717431 37717743 -111799294 - MurERV4-int LTR ERVK -1774 3486 3193 5 872 725 322 61 38 chr6 37717811 37718404 -111798633 - RLTR4_MM-int LTR ERV1 -2308 5293 5009 5 872 335 287 0 0 chr6 37718468 37718569 -111798468 - MMERGLN-int LTR ERV1 -1437 3626 3526 5 872 542 263 60 171 chr6 37719058 37719626 -111797411 + RLTR16 LTR ERVK 1 505 0 5 872 1091 299 49 88 chr6 37719636 37719950 -111797087 - MMERGLN-int LTR ERV1 -3334 4222 3992 5 872 609 52 0 0 chr6 37719950 37720027 -111797010 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 5 872 1091 329 69 81 chr6 37720027 37720038 -111796999 - MMERGLN-int LTR ERV1 -3565 3991 3982 5 872 1321 88 11 16 chr6 37720038 37720223 -111796814 - B2_Mm2 SINE B2 -9 186 3 5 872 1091 329 69 81 chr6 37720223 37721074 -111795963 - MMERGLN-int LTR ERV1 -3575 3981 3144 5 872 3092 54 20 25 chr6 37721074 37721472 -111795565 - MTA_Mm LTR MaLR 0 396 1 5 872 1091 329 69 81 chr6 37721472 37721600 -111795437 - MMERGLN-int LTR ERV1 -4413 3143 2989 5 872 654 330 34 22 chr6 37721685 37722103 -111794934 - MMERGLN-int LTR ERV1 -5978 1800 1159 5 872 2068 129 38 175 chr6 37723116 37723614 -111793423 - RLTR23 LTR ERV1 0 430 1 5 872 3549 173 53 19 chr6 37723619 37724304 -111792733 - MurERV4-int LTR ERVK -4552 708 1 5 872 2223 142 99 52 chr6 37724304 37724749 -111792288 - RMER4A LTR ERVK 0 466 1 5 872 1150 183 113 0 chr6 37724749 37724979 -111792058 + ORR1C1 LTR MaLR 123 378 0 5 872 279 0 0 0 chr6 37725553 37725584 -111791453 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 872 333 100 0 0 chr6 37725584 37725633 -111791404 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 872 396 0 0 0 chr6 37725678 37725722 -111791315 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 872 450 108 0 0 chr6 37725722 37725795 -111791242 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 872 335 83 0 0 chr6 37725862 37725910 -111791127 - RLTR17 LTR ERVK -172 520 473 5 872 244 274 58 23 chr6 37726119 37726205 -111790832 - ID_B1 SINE B4 -56 168 80 5 872 28 29 0 0 chr6 37726570 37726605 -111790432 + AT_rich Low_complexity Low_complexity 1 35 0 5 872 713 245 0 43 chr6 37726622 37726784 -111790253 - RSINE1 SINE B4 -8 157 3 5 872 8427 33 3 0 chr6 37726981 37727956 -111789081 - RLTR13A3 LTR ERVK 0 978 1 5 872 342 250 38 19 chr6 37727959 37728065 -111788972 - B3 SINE B2 -108 108 1 5 872 418 269 20 34 chr6 37728577 37728723 -111788314 - RLTR23 LTR ERV1 -1 429 286 5 872 186 71 0 0 chr6 37728999 37729027 -111788010 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 5 872 1176 62 0 0 chr6 37729165 37729310 -111787727 + B1_Mus2 SINE Alu 3 147 0 5 872 203 0 0 36 chr6 37729310 37729338 -111787699 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5 872 349 272 79 22 chr6 37729342 37729481 -111787556 - MLT1A1 LTR MaLR -54 354 208 5 872 262 146 21 0 chr6 37730159 37730207 -111786830 + B2_Mm2 SINE B2 2 50 -145 5 872 200 114 29 0 chr6 37730207 37730242 -111786795 + (TCTCCC)n Simple_repeat Simple_repeat 5 40 0 5 872 496 258 55 0 chr6 37730483 37730611 -111786426 - ID_B1 SINE B4 0 224 90 5 872 27 29 0 0 chr6 37731070 37731104 -111785933 + AT_rich Low_complexity Low_complexity 1 34 0 5 872 2225 134 6 6 chr6 37731105 37731451 -111785586 + ORR1A1 LTR MaLR 1 346 0 5 872 324 293 108 43 chr6 37731461 37731600 -111785437 - RSINE1 SINE B4 -14 151 4 5 872 28 29 0 0 chr6 37731687 37731722 -111785315 + AT_rich Low_complexity Low_complexity 1 35 0 5 872 540 0 0 0 chr6 37731827 37731887 -111785150 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 872 570 117 0 0 chr6 37731887 37731998 -111785039 + (GA)n Simple_repeat Simple_repeat 2 112 0 5 872 183 42 0 0 chr6 37732265 37732289 -111784748 + (GCTTG)n Simple_repeat Simple_repeat 3 26 0 5 872 3029 176 43 38 chr6 37732618 37733220 -111783817 + RLTR1D LTR ERV1 1 605 0 5 872 1844 172 12 85 chr6 37733271 37733492 -111783545 + RMER5 LTR ERV1 141 344 -190 5 872 1205 62 0 0 chr6 37733492 37733638 -111783399 - B1_Mus2 SINE Alu 0 147 2 5 872 1844 172 12 85 chr6 37733638 37733841 -111783196 + RMER5 LTR ERV1 345 534 0 5 872 604 157 107 0 chr6 37734011 37734124 -111782913 + ORR1B1 LTR MaLR 1 126 -268 5 872 1239 62 45 0 chr6 37734124 37734302 -111782735 - RLTR13C2 LTR ERVK 0 808 623 5 872 2287 70 257 44 chr6 37734302 37734754 -111782283 - RLTR6_Mm LTR ERV1 -70 584 37 5 872 4445 53 29 11 chr6 37734864 37735479 -111781558 - RLTR13C2 LTR ERVK -182 626 1 5 872 561 217 83 135 chr6 37735479 37735655 -111781382 + ORR1B1 LTR MaLR 109 274 -120 5 872 324 70 0 0 chr6 37736786 37736829 -111780208 + (TTTC)n Simple_repeat Simple_repeat 3 45 0 5 872 573 150 133 0 chr6 37737082 37737195 -111779842 + ORR1B1 LTR MaLR 267 394 0 5 872 648 276 146 29 chr6 37737247 37737486 -111779551 - MTD LTR MaLR -51 368 102 5 872 679 180 0 83 chr6 37737588 37737607 -111779430 + B1_Mur2 SINE Alu 17 34 -115 5 872 2486 164 32 2 chr6 37737607 37738016 -111779021 - MTC LTR MaLR 0 421 1 5 872 679 180 0 83 chr6 37738016 37738084 -111778953 + B1_Mur2 SINE Alu 35 98 -51 5 872 2061 80 31 16 chr6 37738084 37738401 -111778636 + RLTRETN_Mm LTR ERVK 1 322 0 5 872 679 180 0 83 chr6 37738401 37738457 -111778580 + B1_Mur2 SINE Alu 99 149 0 5 872 514 297 26 33 chr6 37738631 37738784 -111778253 + MTEb LTR MaLR 1 152 -227 5 872 379 230 41 81 chr6 37738946 37739005 -111778032 - RSINE1 SINE B4 -31 134 80 5 872 3601 20 0 0 chr6 37739005 37739401 -111777636 + MTA_Mm LTR MaLR 1 396 0 6 872 379 230 41 81 chr6 37739401 37739464 -111777573 - RSINE1 SINE B4 -86 79 17 5 872 255 61 0 0 chr6 37739802 37739835 -111777202 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6 872 707 173 47 0 chr6 37739889 37740016 -111777021 + B1_Mus1 SINE Alu 15 147 -1 6 872 469 254 107 15 chr6 37740036 37740232 -111776805 - B3 SINE B2 0 216 3 6 872 622 220 7 21 chr6 37740758 37740902 -111776135 + B1_Mm SINE Alu 5 146 -1 6 872 313 289 0 32 chr6 37741203 37741296 -111775741 - PB1D7 SINE Alu -13 107 18 6 872 2004 118 12 24 chr6 37741881 37741986 -111775051 + ORR1A2 LTR MaLR 1 101 -226 6 872 3534 78 19 4 chr6 37741986 37742461 -111774576 - RLTR45 LTR ERVK 0 482 1 6 872 2004 118 12 24 chr6 37742461 37742686 -111774351 + ORR1A2 LTR MaLR 102 327 0 6 872 271 60 0 87 chr6 37742884 37742976 -111774061 + (TTTTTG)n Simple_repeat Simple_repeat 1 84 0 6 872 1192 56 0 0 chr6 37742992 37743135 -111773902 - B1_Mm SINE Alu 0 147 5 6 872 198 0 0 0 chr6 37743264 37743286 -111773751 + (TA)n Simple_repeat Simple_repeat 1 22 0 6 872 231 205 25 25 chr6 37743351 37743431 -111773606 + (TTTG)n Simple_repeat Simple_repeat 1 80 0 6 872 704 211 7 7 chr6 37743434 37743577 -111773460 - B1_Mur4 SINE Alu -6 144 2 6 872 345 333 10 0 chr6 37743589 37743688 -111773349 - PB1D9 SINE Alu -8 112 13 6 872 1225 48 0 0 chr6 37743688 37743835 -111773202 + B1_Mus2 SINE Alu 1 147 0 6 872 465 34 0 0 chr6 37743835 37743894 -111773143 + (A)n Simple_repeat Simple_repeat 1 59 0 6 872 404 239 53 23 chr6 37743914 37744047 -111772990 - RLTR23 LTR ERV1 -2 428 292 6 872 667 242 12 24 chr6 37744743 37744908 -111772129 + RSINE1 SINE B4 2 164 -1 6 872 544 160 0 20 chr6 37745488 37745590 -111771447 + MTE2a LTR MaLR 1 100 -274 6 872 363 44 0 0 chr6 37745590 37745635 -111771402 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 872 528 68 0 0 chr6 37745637 37745710 -111771327 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 872 401 182 13 0 chr6 37745711 37745788 -111771249 - B3A SINE B2 -118 80 3 6 872 1696 137 251 75 chr6 37745836 37746382 -111770655 + RMER6C LTR ERVK 1 642 -48 6 872 40 49 0 0 chr6 37746627 37746688 -111770349 + AT_rich Low_complexity Low_complexity 1 61 0 6 872 765 146 247 0 chr6 37746735 37746893 -111770144 + RLTR19 LTR ERVK 1 197 -302 6 872 961 126 0 0 chr6 37746893 37747028 -111770009 + B1_Mus1 SINE Alu 2 136 -12 6 872 1371 85 0 4 chr6 37747029 37747530 -111769507 + (GGAA)n Simple_repeat Simple_repeat 1 498 0 6 872 391 192 53 12 chr6 37747513 37747682 -111769355 + GA-rich Low_complexity Low_complexity 2 177 0 6 872 256 135 0 0 chr6 37747702 37747754 -111769283 + RLTR19 LTR ERVK 182 233 -266 6 872 580 266 64 12 chr6 37747751 37747922 -111769115 + MTE2a LTR MaLR 198 377 -2 6 872 236 297 125 9 chr6 37747991 37748103 -111768934 - LTR40b LTR ERVL -51 411 287 6 872 306 0 0 0 chr6 37748114 37748148 -111768889 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 872 1035 102 0 0 chr6 37748148 37748285 -111768752 - B1_Mus2 SINE Alu -10 137 1 6 13 514 299 72 50 chr6 37748643 37748821 -111768216 - BGLII_B LTR ERVK 0 553 361 6 873 4156 62 101 0 chr6 37748821 37749354 -111767683 + LTRIS_Mus LTR ERV1 1 587 0 6 873 845 181 16 11 chr6 37749354 37749540 -111767497 - BGLII_B LTR ERVK -6 435 184 6 873 550 58 11 75 chr6 37749541 37749635 -111767402 - Lx LINE L1 -277 6377 6290 6 873 4107 100 7 45 chr6 37749637 37750325 -111766712 - RLTR19B LTR ERVK -53 662 1 6 873 1681 149 118 17 chr6 37750336 37750691 -111766346 + RLTR9D LTR ERVK 1 391 -12 6 873 842 144 46 0 chr6 37750710 37750863 -111766174 - RMER6D LTR ERVK -4 716 557 6 873 1516 195 75 50 chr6 37750889 37751365 -111765672 - RMER6C LTR ERVK -85 671 208 6 873 634 89 0 0 chr6 37751375 37751465 -111765572 + B1_Mus2 SINE Alu 57 146 -1 6 873 486 257 25 107 chr6 37751498 37751694 -111765343 + MT2B LTR ERVL 326 505 -96 6 873 186 43 0 0 chr6 37751695 37751718 -111765319 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 873 236 118 0 0 chr6 37751740 37751774 -111765263 + RLTR14 LTR ERV1 5 38 -344 6 873 435 214 11 0 chr6 37751789 37751878 -111765159 + RLTR14 LTR ERV1 228 317 -65 6 873 1091 90 14 0 chr6 37752148 37752293 -111764744 - B1_Mus1 SINE Alu 0 148 2 6 873 1141 68 0 0 chr6 37752817 37752963 -111764074 - B1_Mm SINE Alu 0 147 2 6 873 238 338 0 53 chr6 37753790 37753865 -111763172 - B4 SINE B4 -143 149 79 6 873 307 288 25 0 chr6 37754742 37754822 -111762215 + ID SINE ID 4 85 -139 6 873 4612 75 0 28 chr6 37754895 37755499 -111761538 - LTRIS_Mus LTR ERV1 0 587 1 6 873 201 74 0 0 chr6 37757091 37757118 -111759919 + (A)n Simple_repeat Simple_repeat 1 27 0 6 873 273 284 0 0 chr6 37757498 37757565 -111759472 - RMER5 LTR ERV1 -66 468 402 6 873 282 278 24 94 chr6 37757505 37757632 -111759405 + RLTR25B LTR ERVK 380 497 -531 6 873 683 79 0 29 chr6 37757581 37757685 -111759352 + B1_Mus2 SINE Alu 47 147 0 6 873 367 289 67 0 chr6 37757948 37758038 -111758999 - PB1D10 SINE Alu -17 100 5 6 873 188 135 27 0 chr6 37758332 37758369 -111758668 + (CACCAT)n Simple_repeat Simple_repeat 4 41 0 6 873 435 152 324 0 chr6 37758563 37758668 -111758369 + B1_Mur4 SINE Alu 1 139 -11 6 873 486 0 0 0 chr6 37758669 37758723 -111758314 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6 873 638 250 77 0 chr6 37758828 37759024 -111758013 - B3 SINE B2 -5 211 1 6 873 648 241 0 0 chr6 37759030 37759163 -111757874 - ID_B1 SINE B4 -2 222 90 6 873 259 226 134 16 chr6 37759211 37759319 -111757718 - ID4 SINE ID -29 123 6 6 873 548 325 20 49 chr6 37759381 37759585 -111757452 - B4A SINE B4 -16 276 79 6 873 3849 66 11 0 chr6 37759694 37760164 -111756873 + MT2C_Mm LTR ERVL 1 475 0 6 873 7285 44 4 30 chr6 37760164 37761074 -111755963 + MERVL-int LTR ERVL 1 887 -4598 6 873 1446 52 5 0 chr6 37761074 37761265 -111755772 + MTB LTR MaLR 209 400 0 6 873 1264 105 26 0 chr6 37761275 37761465 -111755572 + B2_Mm2 SINE B2 1 195 0 6 873 423 56 0 0 chr6 37762384 37762438 -111754599 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 6 873 456 135 0 0 chr6 37762506 37762580 -111754457 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 6 873 223 191 0 0 chr6 37762733 37762775 -111754262 + (TTA)n Simple_repeat Simple_repeat 2 43 0 6 873 280 278 90 97 chr6 37762841 37763038 -111753999 - B4A SINE B4 -37 187 1 6 873 441 0 0 0 chr6 37763112 37763161 -111753876 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 873 1214 165 44 153 chr6 37763205 37763274 -111753763 - ORR1C2 LTR MaLR -1 383 322 6 873 1225 41 0 0 chr6 37763274 37763420 -111753617 + B1_Mus2 SINE Alu 2 147 0 6 873 1214 165 44 153 chr6 37763420 37763671 -111753366 - ORR1C2 LTR MaLR -63 321 98 6 873 252 279 46 11 chr6 37763668 37763681 -111753356 - RSINE1 SINE B4 -73 92 3 6 873 511 95 14 0 chr6 37763681 37763755 -111753282 - B3 SINE B2 -140 76 2 6 873 288 0 0 0 chr6 37763770 37763802 -111753235 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 873 748 100 0 16 chr6 37763903 37764025 -111753012 + (TTTC)n Simple_repeat Simple_repeat 4 123 0 6 873 213 39 0 0 chr6 37764027 37764053 -111752984 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 6 873 2865 64 3 0 chr6 37764053 37764444 -111752593 - MTB LTR MaLR -5 395 4 6 873 1158 117 0 0 chr6 37764447 37764626 -111752411 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 6 873 294 125 0 0 chr6 37764628 37764676 -111752361 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 873 441 217 160 0 chr6 37764676 37764782 -111752255 - B1F SINE Alu -1 148 26 6 873 504 284 0 21 chr6 37765138 37765282 -111751755 + ID_B1 SINE B4 84 224 0 6 873 1019 199 98 158 chr6 37765339 37765587 -111751450 + RLTR9C LTR ERVK 1 249 -144 6 873 1659 26 11 0 chr6 37765587 37765777 -111751260 - B2_Mm1t SINE B2 0 193 2 6 873 1019 199 98 158 chr6 37765777 37765946 -111751091 + RLTR9C LTR ERVK 250 393 0 6 873 2103 141 30 78 chr6 37766021 37766459 -111750578 - RLTR25B LTR ERVK -607 421 5 6 873 428 311 44 84 chr6 37766449 37766579 -111750458 - MTD LTR MaLR -146 273 150 6 873 3260 51 177 2 chr6 37766579 37767015 -111750022 - RLTR1B LTR ERV1 0 512 1 6 873 428 311 44 84 chr6 37767015 37767158 -111749879 - MTD LTR MaLR -270 149 11 6 873 345 203 58 0 chr6 37767159 37767228 -111749809 + ID_B1 SINE B4 124 196 -28 6 873 414 0 0 0 chr6 37767270 37767316 -111749721 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 6 873 838 148 14 27 chr6 37767353 37767499 -111749538 + B1_Mus1 SINE Alu 5 148 0 6 873 444 244 89 0 chr6 37767547 37767670 -111749367 + B1F2 SINE Alu 3 136 -13 6 873 2076 189 5 3 chr6 37767784 37768155 -111748882 + ORR1D1 LTR MaLR 3 374 0 6 873 346 252 42 67 chr6 37768442 37768561 -111748476 - RLTR14 LTR ERV1 -3 379 264 6 873 1221 52 76 54 chr6 37768587 37768771 -111748266 - B2_Mm2 SINE B2 -5 190 3 6 873 827 263 77 88 chr6 37769040 37769645 -111747392 + L1MA4 LINE L1 5533 6084 -1612 6 873 2030 121 141 10 chr6 37769690 37770073 -111746964 - RLTR26 LTR ERVK 0 642 210 6 873 540 273 68 53 chr6 37770226 37770489 -111746548 + MER34A LTR ERV1 5 271 -300 6 873 575 170 26 9 chr6 37770486 37770599 -111746438 - B1F2 SINE Alu 0 149 35 6 873 496 274 0 0 chr6 37770816 37770960 -111746077 + B1F2 SINE Alu 1 144 -5 6 873 230 306 0 0 chr6 37771026 37771088 -111745949 + ID_B1 SINE B4 118 179 -45 6 873 1133 279 27 15 chr6 37771192 37771520 -111745517 + RMER5 LTR ERV1 2 333 -201 6 873 443 212 86 81 chr6 37771534 37771744 -111745293 - RLTR14 LTR ERV1 -12 370 160 6 873 409 316 85 57 chr6 37771890 37772081 -111744956 - RLTR6-int LTR ERV1 -4248 3530 3332 6 873 3465 40 0 0 chr6 37772081 37772477 -111744560 - MTA_Mm LTR MaLR 0 396 1 7 873 409 316 85 57 chr6 37772477 37772674 -111744363 - RLTR6-int LTR ERV1 -4447 3331 3131 6 873 809 130 570 0 chr6 37773219 37773419 -111743618 - RLTR23 LTR ERV1 0 430 117 7 873 328 104 0 0 chr6 37773419 37773467 -111743570 - RLTR23 LTR ERV1 -206 224 177 7 873 324 230 0 51 chr6 37773461 37773539 -111743498 - RLTR23 LTR ERV1 -162 268 195 7 873 376 312 0 8 chr6 37773775 37773895 -111743142 - B1F SINE Alu 0 120 5 7 873 719 265 69 78 chr6 37773929 37774558 -111742479 - L1MA4A LINE L1 -233 6070 5476 7 873 272 136 84 70 chr6 37774595 37774666 -111742371 - PB1D9 SINE Alu -6 114 43 7 873 1444 274 79 51 chr6 37774678 37774869 -111742168 - L1MA4A LINE L1 -796 5387 5216 7 873 6306 116 34 67 chr6 37774869 37775937 -111741100 + RLTR13D4 LTR ERVK 1 1033 0 7 873 1444 274 83 53 chr6 37775937 37776502 -111740535 - L1MA4A LINE L1 -928 5215 4606 7 873 216 267 0 0 chr6 37776776 37776836 -111740201 + CT-rich Low_complexity Low_complexity 1 60 0 7 873 1479 194 144 24 chr6 37777241 37777615 -111739422 + MTD LTR MaLR 1 419 0 7 873 411 21 0 0 chr6 37777740 37777788 -111739249 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 873 219 106 62 21 chr6 37777842 37777890 -111739147 + T-rich Low_complexity Low_complexity 1 50 0 7 873 719 265 78 42 chr6 37778248 37778441 -111738596 - B3 SINE B2 -13 203 4 7 873 454 228 17 34 chr6 37778491 37778609 -111738428 + ORR1D2 LTR MaLR 1 116 -254 7 873 364 250 83 42 chr6 37778634 37778730 -111738307 - PB1D10 SINE Alu -49 100 1 7 873 216 0 0 0 chr6 37778854 37778878 -111738159 + (T)n Simple_repeat Simple_repeat 1 24 0 7 873 307 89 54 0 chr6 37778878 37778934 -111738103 - B1_Mm SINE Alu 0 147 89 7 873 1090 331 54 30 chr6 37778938 37779436 -111737601 + MER21B LTR ERV1 53 562 -301 7 873 21 0 0 0 chr6 37779440 37779461 -111737576 + AT_rich Low_complexity Low_complexity 1 21 0 7 873 568 105 0 11 chr6 37779597 37779684 -111737353 - B1_Mur4 SINE Alu 0 150 65 7 873 212 308 26 0 chr6 37779865 37779877 -111737160 - PB1D10 SINE Alu -32 85 6 7 873 225 288 15 0 chr6 37779877 37779943 -111737094 - ID_B1 SINE B4 -71 153 87 7 873 670 161 113 0 chr6 37780009 37780133 -111736904 + B1_Mur3 SINE Alu 1 138 -11 7 873 407 254 17 8 chr6 37780836 37780955 -111736082 - RLTR22_Mur LTR ERVK -139 1709 1590 7 873 1327 194 19 68 chr6 37780982 37781174 -111735863 - RLTR22_Mur LTR ERVK -1086 762 584 7 873 2165 127 15 6 chr6 37781174 37781498 -111735539 - ORR1A2 LTR MaLR 0 327 1 7 873 1327 194 19 68 chr6 37781498 37781671 -111735366 - RLTR22_Mur LTR ERVK -1265 583 415 7 873 351 250 31 20 chr6 37781733 37781831 -111735206 + RLTR23 LTR ERV1 332 430 0 7 873 9015 209 56 32 chr6 37781982 37783648 -111733389 - Lx6 LINE L1 0 7696 5704 7 873 653 228 95 100 chr6 37783648 37784018 -111733019 - RLTR9A LTR ERVK 0 368 1 7 873 9015 156 46 41 chr6 37784018 37784688 -111732349 - Lx6 LINE L1 -177 5703 5061 7 873 1646 32 0 0 chr6 37784688 37784875 -111732162 - B2_Mm1a SINE B2 -5 188 2 7 873 9015 156 46 41 chr6 37784875 37785847 -111731190 - Lx6 LINE L1 -820 5060 4045 7 873 1696 164 27 83 chr6 37785854 37786227 -111730810 + ORR1B1 LTR MaLR 41 392 -2 7 873 3584 59 48 2 chr6 37786235 37786696 -111730341 + RLTR45 LTR ERVK 1 482 0 7 873 1660 139 19 80 chr6 37786696 37786881 -111730156 - Lx6 LINE L1 -1832 4048 3868 7 873 4121 145 85 30 chr6 37786881 37787647 -111729390 + RLTR13C2 LTR ERVK 1 808 0 7 873 1660 139 19 80 chr6 37787647 37787776 -111729261 - Lx6 LINE L1 -2013 3867 3742 7 873 1454 62 0 59 chr6 37787776 37787980 -111729057 - B2_Mm1t SINE B2 0 193 2 7 873 1660 139 19 80 chr6 37787980 37788029 -111729008 - Lx6 LINE L1 -2139 3741 3705 7 873 756 124 91 0 chr6 37788029 37788150 -111728887 - MurERV4_19-int LTR ERVK -466 5314 5183 7 873 7353 89 65 17 chr6 37788215 37789318 -111727719 - MurERV4_19-int LTR ERVK -557 5223 4068 7 873 4187 144 43 75 chr6 37789330 37790170 -111726867 - Lx6 LINE L1 -3010 2870 2059 7 873 267 31 0 0 chr6 37790170 37790202 -111726835 + (TGG)n Simple_repeat Simple_repeat 1 32 0 7 873 4187 147 75 11 chr6 37790202 37790695 -111726342 - Lx6 LINE L1 -3822 2058 2022 7 873 259 119 0 0 chr6 37790840 37790882 -111726155 + Lx8 LINE L1 7427 7468 -5 7 873 426 148 22 33 chr6 37791106 37791197 -111725840 - B1_Mur4 SINE Alu -1 149 60 7 873 952 221 28 23 chr6 37791442 37791660 -111725377 + ORR1D1 LTR MaLR 1 219 -155 7 873 317 233 89 0 chr6 37791671 37791761 -111725276 + ORR1D1 LTR MaLR 287 384 0 7 873 364 250 7 118 chr6 37791848 37791984 -111725053 + MT2B LTR ERVL 158 278 -323 7 873 760 186 7 28 chr6 37791867 37792011 -111725026 + B1_Mur4 SINE Alu 9 149 -1 7 873 204 40 0 0 chr6 37793502 37793527 -111723510 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 873 850 30 14 89 chr6 37793545 37793691 -111723346 - B1_Mm SINE Alu 0 147 13 7 873 388 236 28 9 chr6 37793909 37794016 -111723021 + PB1D10 SINE Alu 5 113 -4 7 873 1469 177 35 30 chr6 37794016 37794354 -111722683 + RMER10A LTR ERVL 1 340 -102 7 873 819 128 64 0 chr6 37794374 37794499 -111722538 + B1_Mur4 SINE Alu 1 133 -17 7 873 1153 56 0 7 chr6 37794502 37794647 -111722390 + B1_Mm SINE Alu 2 145 -2 7 873 390 69 0 0 chr6 37794647 37794705 -111722332 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 7 873 233 200 33 0 chr6 37794723 37794783 -111722254 + GA-rich Low_complexity Low_complexity 4 65 0 7 873 1311 90 17 0 chr6 37794783 37794961 -111722076 + B2_Mm2 SINE B2 1 181 -14 7 873 893 97 8 0 chr6 37794961 37795095 -111721942 + (GAAA)n Simple_repeat Simple_repeat 3 137 0 7 873 694 256 14 46 chr6 37795212 37795429 -111721608 - RMER16 LTR ERVK -1 532 323 7 873 269 175 100 57 chr6 37795493 37795615 -111721422 - RMER16 LTR ERVK -453 80 1 7 873 680 233 34 6 chr6 37795632 37795809 -111721228 - B3A SINE B2 -16 182 1 7 873 1146 58 0 0 chr6 37796236 37796374 -111720663 + B1_Mm SINE Alu 1 138 -9 7 873 408 20 0 0 chr6 37796374 37796423 -111720614 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7 873 588 193 17 9 chr6 37796532 37796647 -111720390 + PB1D9 SINE Alu 5 120 0 7 873 309 348 84 0 chr6 37797088 37797243 -111719794 - RMER15 LTR ERVL -14 561 394 7 873 257 178 0 0 chr6 37797285 37797330 -111719707 - RMER15 LTR ERVL -128 447 403 7 873 246 146 0 0 chr6 37797346 37797387 -111719650 - RMER15 LTR ERVL -132 443 403 7 873 2512 117 124 18 chr6 37797521 37797957 -111719080 + RLTR45 LTR ERVK 1 482 0 7 873 788 250 197 62 chr6 37798188 37798670 -111718367 - RMER21B LTR ERV1 -292 550 4 7 873 434 245 54 100 chr6 37798770 37799010 -111718027 + RLTR14 LTR ERV1 154 382 0 7 873 218 200 0 0 chr6 37799054 37799104 -111717933 + A-rich Low_complexity Low_complexity 1 50 0 7 873 1692 16 0 5 chr6 37799157 37799348 -111717689 + B2_Mm1a SINE B2 4 193 0 7 873 574 244 84 84 chr6 37799370 37799666 -111717371 + RMER21B LTR ERV1 272 567 -275 7 873 295 333 27 34 chr6 37799803 37799952 -111717085 - RMER15 LTR ERVL -152 423 276 7 873 392 223 38 19 chr6 37800550 37800655 -111716382 + RLTR23 LTR ERV1 324 430 0 7 873 351 318 128 8 chr6 37800659 37800792 -111716245 - ID_B1 SINE B4 -62 162 14 7 873 298 291 64 0 chr6 37800868 37800978 -111716059 - PB1D10 SINE Alu 0 117 1 7 873 816 185 7 27 chr6 37801128 37801278 -111715759 + B1_Mus2 SINE Alu 1 147 0 7 873 869 241 201 35 chr6 37801340 37801654 -111715383 - ORR1D2 LTR MaLR 0 370 5 7 873 878 162 206 6 chr6 37801900 37802080 -111714957 + B3 SINE B2 1 216 0 7 873 22 0 0 0 chr6 37802126 37802148 -111714889 + AT_rich Low_complexity Low_complexity 1 22 0 7 873 1756 131 270 47 chr6 37802401 37802849 -111714188 - RLTR6_Mm LTR ERV1 -70 584 37 7 873 758 124 78 35 chr6 37803241 37803383 -111713654 + B1_Mur4 SINE Alu 3 150 0 7 873 375 299 60 0 chr6 37803475 37803592 -111713445 - MER63B DNA AcHobo -1 435 312 7 873 1292 86 29 0 chr6 37804027 37804202 -111712835 + B2_Mm2 SINE B2 3 182 -13 7 873 343 107 286 111 chr6 37804248 37804374 -111712663 + B2_Mm2 SINE B2 47 194 -1 7 873 580 241 35 7 chr6 37804414 37804556 -111712481 - B1_Mus2 SINE Alu -1 146 1 7 873 231 218 333 0 chr6 37804647 37804734 -111712303 - RSINE1 SINE B4 -46 119 4 7 873 382 343 14 20 chr6 37805134 37805280 -111711757 + RSINE1 SINE B4 3 147 -18 7 873 608 111 0 8 chr6 37805280 37805398 -111711639 + (CA)n Simple_repeat Simple_repeat 1 117 0 7 873 1803 146 29 62 chr6 37805603 37806019 -111711018 - RMER17C LTR ERVK -8 402 1 7 873 1217 48 0 0 chr6 37806302 37806449 -111710588 + B1_Mm SINE Alu 1 147 0 7 873 770 43 84 17 chr6 37806547 37806666 -111710371 - B1_Mus2 SINE Alu 0 147 21 7 873 400 169 129 71 chr6 37806666 37806682 -111710355 - ID_B1 SINE B4 0 219 77 7 873 1185 54 0 13 chr6 37806885 37807034 -111710003 + B1_Mus1 SINE Alu 2 148 0 7 873 1227 180 266 30 chr6 37807226 37807564 -111709473 - MTD LTR MaLR 0 419 2 7 873 484 294 117 59 chr6 37807637 37807944 -111709093 + MER21B LTR ERV1 14 338 -525 7 873 319 187 0 62 chr6 37808119 37808199 -111708838 - RMER10A LTR ERVL 0 442 368 7 873 641 197 98 0 chr6 37808271 37808393 -111708644 + B1_Mur2 SINE Alu 2 135 -14 7 873 668 119 0 9 chr6 37808450 37808560 -111708477 + (TTTC)n Simple_repeat Simple_repeat 4 112 0 7 873 215 146 24 0 chr6 37808561 37808602 -111708435 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 7 873 2555 101 155 4 chr6 37808615 37809074 -111707963 + RLTR47_MM LTR ERV1 1 528 -4 7 873 733 188 15 0 chr6 37809074 37809207 -111707830 - B1_Mur4 SINE Alu -14 136 2 7 873 281 26 26 0 chr6 37809207 37809245 -111707792 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 7 873 912 236 73 5 chr6 37809245 37809437 -111707600 + B3 SINE B2 10 214 -2 7 873 1684 246 53 88 chr6 37809591 37810214 -111706823 - MT2B LTR ERVL 0 601 1 7 873 183 80 0 0 chr6 37810598 37810623 -111706414 + (CACCC)n Simple_repeat Simple_repeat 4 28 0 7 873 441 0 0 0 chr6 37810623 37810672 -111706365 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 873 225 83 0 0 chr6 37810735 37810771 -111706266 + (A)n Simple_repeat Simple_repeat 1 36 0 7 873 2926 46 3 0 chr6 37810791 37811136 -111705901 - ORR1A1 LTR MaLR 0 346 1 7 873 431 284 35 40 chr6 37811645 37811843 -111705194 - MER77 LTR ERVL -6 601 405 7 873 345 308 25 33 chr6 37811869 37811990 -111705047 + ID_B1 SINE B4 81 200 -24 8 873 355 324 0 9 chr6 37812040 37812149 -111704888 + GA-rich Low_complexity Low_complexity 1 108 0 8 873 326 322 45 39 chr6 37812203 37812358 -111704679 + RSINE1 SINE B4 10 165 0 8 873 195 42 0 0 chr6 37812383 37812407 -111704630 + (A)n Simple_repeat Simple_repeat 1 24 0 8 873 414 267 0 55 chr6 37812408 37812535 -111704502 + PB1D9 SINE Alu 1 120 0 8 873 304 197 39 26 chr6 37812689 37812767 -111704270 - B3 SINE B2 -1 215 137 8 873 1272 285 33 37 chr6 37812757 37813216 -111703821 - RLTR1 LTR ERV1 -8 616 160 8 873 42 0 0 0 chr6 37813319 37813361 -111703676 + AT_rich Low_complexity Low_complexity 1 42 0 8 873 461 261 151 42 chr6 37813489 37813511 -111703526 - RMER21B LTR ERV1 -277 565 549 8 873 3171 37 37 3 chr6 37813511 37813894 -111703143 - MTA_Mm LTR MaLR 0 396 1 8 873 461 268 143 55 chr6 37813894 37814229 -111702808 - RMER21B LTR ERV1 -285 662 311 8 873 383 345 9 0 chr6 37814372 37814482 -111702555 + RLTR24 LTR ERV1 311 421 -108 8 873 533 252 42 0 chr6 37814583 37814702 -111702335 - B3 SINE B2 -91 125 2 8 873 902 65 0 0 chr6 37814934 37815057 -111701980 + B1_Mus2 SINE Alu 23 145 -2 8 873 26 50 0 0 chr6 37815530 37815570 -111701467 + AT_rich Low_complexity Low_complexity 1 40 0 8 873 543 31 0 0 chr6 37815668 37815733 -111701304 + (TA)n Simple_repeat Simple_repeat 1 65 0 8 873 791 191 7 13 chr6 37816582 37816731 -111700306 + RLTR19 LTR ERVK 352 499 0 8 873 709 288 26 84 chr6 37816854 37817233 -111699804 - ORR1E LTR MaLR -2 357 1 8 873 238 250 0 59 chr6 37817279 37817347 -111699690 - ID_B1 SINE B4 -62 162 99 8 873 266 244 157 12 chr6 37817475 37817558 -111699479 + B3 SINE B2 84 178 -38 8 873 657 226 140 6 chr6 37817564 37817742 -111699295 + ORR1D1 LTR MaLR 5 206 -168 8 873 857 224 20 25 chr6 37817846 37818043 -111698994 - B3A SINE B2 -2 196 1 8 873 329 43 21 0 chr6 37818054 37818101 -111698936 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 873 2313 145 105 19 chr6 37818163 37818592 -111698445 + RMER4A LTR ERVK 1 466 0 8 873 1015 199 64 51 chr6 37818663 37818959 -111698078 + RLTR24 LTR ERV1 230 529 0 8 873 741 158 58 0 chr6 37819043 37819182 -111697855 - B1_Mus2 SINE Alu 0 147 1 8 873 362 266 105 0 chr6 37819075 37819199 -111697838 - B4 SINE B4 -88 204 68 8 873 310 321 26 35 chr6 37819971 37820084 -111696953 - PB1D7 SINE Alu -8 112 1 8 873 341 227 13 39 chr6 37821028 37821184 -111695853 + (CGG)n Simple_repeat Simple_repeat 2 153 0 8 873 213 39 0 0 chr6 37821407 37821433 -111695604 + (CCCCCG)n Simple_repeat Simple_repeat 3 28 0 8 873 240 35 0 0 chr6 37822182 37822211 -111694826 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 873 295 287 33 33 chr6 37822222 37822312 -111694725 - B1F SINE Alu -56 93 4 8 873 1205 151 14 14 chr6 37822594 37822815 -111694222 + URR1A DNA MER1_type 1 221 -5 8 873 784 201 0 26 chr6 37822868 37823021 -111694016 - B1_Mur4 SINE Alu 0 150 2 8 873 517 313 79 25 chr6 37823617 37823820 -111693217 - MuRRS4-int LTR ERV1 -1041 4022 3809 8 873 1759 185 196 67 chr6 37823847 37824599 -111692438 + RMER6C LTR ERVK 1 720 0 8 873 321 273 172 14 chr6 37824642 37824787 -111692250 - RLTR6-int LTR ERV1 -2678 5100 4933 8 873 397 303 45 23 chr6 37825183 37825449 -111691588 - RLTR6-int LTR ERV1 -3190 4416 4210 8 873 1161 152 40 127 chr6 37825479 37825575 -111691462 - RMER6C LTR ERVK 0 690 614 8 873 4161 68 113 0 chr6 37825575 37826133 -111690904 - L1_Mus1 LINE L1 0 6567 5947 8 873 1161 152 40 127 chr6 37826133 37826360 -111690677 - RMER6C LTR ERVK -77 613 395 8 873 342 162 16 49 chr6 37826407 37826471 -111690566 - PB1D9 SINE Alu -233 81 21 8 873 723 196 219 57 chr6 37826471 37826736 -111690301 - RLTR5_Mm LTR ERV1 0 628 288 8 873 308 158 0 17 chr6 37826846 37826904 -111690133 - RLTR5_Mm LTR ERV1 -597 57 1 8 873 226 256 198 0 chr6 37826925 37827011 -111690026 - PB1D9 SINE Alu 0 120 18 8 873 498 143 0 0 chr6 37826935 37827012 -111690025 - MT2B LTR ERVL -344 257 181 8 873 285 67 1323 0 chr6 37826999 37827061 -111689976 - RMER6D LTR ERVK -681 39 1 8 873 899 55 0 23 chr6 37827195 37827325 -111689712 - B1_Mus1 SINE Alu 0 148 22 8 873 545 312 50 53 chr6 37827393 37827800 -111689237 - RLTR6-int LTR ERV1 -3900 3878 3268 8 873 27 29 0 0 chr6 37828709 37828743 -111688294 + AT_rich Low_complexity Low_complexity 1 34 0 8 873 219 255 0 0 chr6 37829386 37829433 -111687604 - PB1D9 SINE Alu -69 51 5 8 873 587 248 196 0 chr6 37829624 37829777 -111687260 - B3 SINE B2 -30 186 4 8 873 492 193 17 42 chr6 37829811 37829930 -111687107 - B3 SINE B2 0 216 101 8 873 434 294 99 6 chr6 37829936 37830107 -111686930 + Lx8 LINE L1 6988 7174 -299 8 873 234 151 189 0 chr6 37830211 37830264 -111686773 + RSINE1 SINE B4 34 96 -69 8 873 359 205 28 20 chr6 37830315 37830414 -111686623 - PB1D9 SINE Alu -15 105 1 8 873 280 291 36 72 chr6 37830436 37830547 -111686490 + PB1D7 SINE Alu 5 111 -9 8 873 1062 238 77 90 chr6 37830681 37830986 -111686051 - Lx8 LINE L1 -774 6699 6399 8 873 553 193 0 48 chr6 37830986 37831111 -111685926 - PB1D9 SINE Alu 0 120 2 8 873 1062 238 77 90 chr6 37831111 37831184 -111685853 - Lx8 LINE L1 -1075 6398 6326 8 873 218 188 0 59 chr6 37831211 37831262 -111685775 - B3A SINE B2 -143 55 8 8 873 319 212 48 39 chr6 37831270 37831373 -111685664 - Lx8 LINE L1 -1198 6275 6172 8 873 342 215 0 0 chr6 37831374 37831453 -111685584 + (TA)n Simple_repeat Simple_repeat 2 80 0 8 873 552 202 23 15 chr6 37831460 37831591 -111685446 - B3 SINE B2 -21 195 64 8 873 285 293 40 0 chr6 37831707 37831782 -111685255 - PB1D10 SINE Alu -27 90 13 8 873 859 251 30 5 chr6 37831823 37832023 -111685014 + B3 SINE B2 2 206 -10 8 873 265 216 141 10 chr6 37832159 37832257 -111684780 - PB1D7 SINE Alu 0 120 11 8 873 279 92 46 0 chr6 37832507 37832572 -111684465 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 8 873 822 176 55 60 chr6 37832579 37832778 -111684259 - B3A SINE B2 0 198 1 8 873 562 224 48 0 chr6 37832896 37833021 -111684016 - RLTR18-int LTR ERVK -511 4850 4720 8 873 1463 22 78 0 chr6 37833062 37833080 -111683957 - B2_Mm1a SINE B2 0 193 176 8 873 200 59 29 0 chr6 37833080 37833114 -111683923 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 8 873 1463 22 78 0 chr6 37833114 37833274 -111683763 - B2_Mm1a SINE B2 -18 175 2 8 873 243 0 0 0 chr6 37833291 37833318 -111683719 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 8 873 1037 97 51 51 chr6 37833318 37833513 -111683524 - B2_Mm2 SINE B2 0 195 1 8 873 1051 182 71 48 chr6 37833522 37833833 -111683204 - MYSERV6-int LTR ERVK -2233 6726 6409 8 873 359 171 64 37 chr6 37833842 37833951 -111683086 - MYSERV6-int LTR ERVK -2439 6520 6409 8 873 287 268 144 51 chr6 37834029 37834147 -111682890 - B1_Mur4 SINE Alu -18 129 1 8 873 314 176 102 34 chr6 37834147 37834235 -111682802 - MYSERV6-int LTR ERVK -3965 4994 4901 8 873 225 0 0 0 chr6 37834566 37834591 -111682446 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 873 7944 157 90 51 chr6 37834679 37835698 -111681339 - MYSERV6-int LTR ERVK -4335 4624 3520 8 873 975 130 96 6 chr6 37835698 37835876 -111681161 - B2_Mm2 SINE B2 0 195 2 8 873 7944 157 90 51 chr6 37835876 37836751 -111680286 - MYSERV6-int LTR ERVK -5440 3519 2655 8 873 2272 176 22 4 chr6 37836741 37837202 -111679835 - MYSERV6-int LTR ERVK -6978 1981 1513 8 873 1353 255 63 13 chr6 37837224 37837305 -111679732 - RLTR20C LTR ERVK 0 534 446 8 873 194 0 39 0 chr6 37837305 37837331 -111679706 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 873 1353 233 213 13 chr6 37837331 37837706 -111679331 - RLTR20C LTR ERVK -89 445 1 8 873 248 289 108 0 chr6 37837818 37837901 -111679136 - ID_B1 SINE B4 -25 199 108 8 873 242 256 69 100 chr6 37838183 37838313 -111678724 - PB1 SINE Alu -1 126 1 8 873 273 137 99 144 chr6 37838318 37838429 -111678608 - B1_Mur1 SINE Alu 0 149 44 8 873 432 267 92 106 chr6 37838332 37838550 -111678487 - ID_B1 SINE B4 -7 217 3 8 873 237 352 14 0 chr6 37838600 37838671 -111678366 + ID4 SINE ID 2 73 -10 8 873 9790 134 23 67 chr6 37839071 37839903 -111677134 - L1VL4 LINE L1 -667 5210 4432 8 873 1168 69 0 0 chr6 37839903 37840048 -111676989 - B1_Mus1 SINE Alu 0 148 4 8 873 9790 134 23 67 chr6 37840048 37840508 -111676529 - L1VL4 LINE L1 -1446 4431 3987 8 873 1308 30 71 6 chr6 37840508 37840676 -111676361 - B2_Mm2 SINE B2 -15 180 2 8 873 9790 128 20 68 chr6 37840676 37841526 -111675511 - L1VL4 LINE L1 -1891 3986 3264 8 873 1117 75 7 0 chr6 37841526 37841672 -111675365 - B1_Mus2 SINE Alu 0 147 1 8 873 5125 103 12 70 chr6 37841672 37842419 -111674618 - L1VL4 LINE L1 -5537 1120 401 8 873 973 213 45 15 chr6 37842426 37842827 -111674210 - L1_Mur2 LINE L1 -5478 824 399 8 873 339 187 0 0 chr6 37843036 37843064 -111673973 + polypyrimidine Low_complexity Low_complexity 48 75 0 8 873 1500 0 0 16 chr6 37843064 37843247 -111673790 + (TTC)n Simple_repeat Simple_repeat 1 180 0 8 873 339 187 0 0 chr6 37843247 37843293 -111673744 + polypyrimidine Low_complexity Low_complexity 2 47 0 8 873 355 248 86 0 chr6 37843301 37843406 -111673631 - Lx9 LINE L1 -475 7169 7056 8 873 295 274 11 35 chr6 37843569 37843656 -111673381 - PB1D9 SINE Alu -17 103 19 8 873 231 316 68 0 chr6 37843837 37843954 -111673083 + L1MC4a LINE L1 5613 5737 -2145 8 873 342 0 0 0 chr6 37843992 37844030 -111673007 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 873 256 157 0 56 chr6 37844107 37844161 -111672876 + L1MC4a LINE L1 5882 5932 -1950 8 873 1084 64 28 0 chr6 37844363 37844504 -111672533 - B1_Mus2 SINE Alu 0 147 3 8 873 240 257 189 0 chr6 37844777 37844851 -111672186 - PB1D10 SINE Alu -29 88 1 8 873 425 230 121 69 chr6 37845175 37845348 -111671689 - B3A SINE B2 0 198 17 8 873 297 0 0 0 chr6 37845448 37845481 -111671556 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 873 25 31 0 0 chr6 37845481 37845513 -111671524 + AT_rich Low_complexity Low_complexity 1 32 0 8 873 2109 147 281 93 chr6 37845547 37845968 -111671069 - RMER21B LTR ERV1 0 842 418 8 873 387 0 0 0 chr6 37845968 37846011 -111671026 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 873 2109 147 281 93 chr6 37846011 37846255 -111670782 - RMER21B LTR ERV1 -425 417 53 8 873 294 206 78 93 chr6 37846339 37846476 -111670561 - B2_Mm2 SINE B2 0 216 2 8 873 3494 53 6 68 chr6 37846611 37847099 -111669938 - L1_Mus2 LINE L1 0 6566 6109 8 873 614 191 0 7 chr6 37847162 37847284 -111669753 - B1_Mus1 SINE Alu -30 118 1 8 873 1176 302 84 24 chr6 37847408 37847778 -111669259 - MER70B LTR ERVL -103 475 84 9 873 198 0 0 0 chr6 37847852 37847874 -111669163 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 873 345 253 0 24 chr6 37847878 37847963 -111669074 + ID4 SINE ID 1 83 0 9 873 975 193 115 0 chr6 37847970 37848162 -111668875 + B3 SINE B2 1 214 -2 9 873 22 0 0 0 chr6 37848958 37848980 -111668057 + AT_rich Low_complexity Low_complexity 1 22 0 9 873 183 163 70 0 chr6 37849355 37849398 -111667639 + MIRb SINE MIR 196 241 -27 9 873 263 104 38 38 chr6 37849536 37849616 -111667421 + T-rich Low_complexity Low_complexity 3 82 0 9 873 411 265 50 62 chr6 37850607 37850768 -111666269 - RSINE1 SINE B4 -3 162 4 9 873 426 210 167 16 chr6 37850783 37850909 -111666128 - B1_Mur2 SINE Alu -3 146 2 9 873 996 224 199 25 chr6 37851348 37851779 -111665258 - Lx9 LINE L1 -19 7625 7120 9 873 654 233 6 6 chr6 37851812 37851984 -111665053 - Lx9 LINE L1 -627 7017 6703 9 873 227 103 26 0 chr6 37852031 37852070 -111664967 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 9 873 887 207 75 10 chr6 37852149 37852349 -111664688 - B3 SINE B2 -2 214 2 9 873 527 318 164 47 chr6 37852442 37852759 -111664278 - ORR1E LTR MaLR 0 359 6 9 873 1172 55 7 0 chr6 37852807 37852953 -111664084 - B1_Mus1 SINE Alu 0 148 2 9 873 26 0 0 0 chr6 37853346 37853372 -111663665 + AT_rich Low_complexity Low_complexity 1 26 0 9 873 194 0 39 0 chr6 37853372 37853398 -111663639 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 873 519 236 151 16 chr6 37853937 37854122 -111662915 - B3 SINE B2 -6 210 1 9 873 330 364 60 78 chr6 37854169 37854336 -111662701 - RSINE1 SINE B4 0 165 2 9 873 198 0 0 0 chr6 37855009 37855031 -111662006 + (TTG)n Simple_repeat Simple_repeat 1 22 0 9 873 298 232 24 24 chr6 37855032 37855116 -111661921 - PB1D10 SINE Alu -9 108 25 9 873 293 0 0 26 chr6 37855486 37855524 -111661513 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 9 873 679 175 92 40 chr6 37856196 37856369 -111660668 + B2_Mm2 SINE B2 2 183 -12 9 873 735 251 71 6 chr6 37856425 37856620 -111660417 - MTD LTR MaLR 0 419 204 9 873 234 149 42 21 chr6 37856662 37856710 -111660327 + CT-rich Low_complexity Low_complexity 5 53 0 9 873 481 306 134 0 chr6 37856711 37856897 -111660140 - B3 SINE B2 -5 211 1 9 873 228 256 62 113 chr6 37856900 37856933 -111660104 - MTD LTR MaLR -326 95 67 9 873 827 255 70 0 chr6 37856933 37857133 -111659904 + B3 SINE B2 3 216 0 9 873 228 256 62 113 chr6 37857133 37857196 -111659841 - MTD LTR MaLR -355 66 4 9 873 221 283 37 92 chr6 37857227 37857336 -111659701 + L2a LINE L2 3282 3384 -42 9 873 789 291 29 24 chr6 37857390 37857598 -111659439 - B3 SINE B2 -2 214 6 9 873 540 305 71 97 chr6 37857600 37857650 -111659387 - B3 SINE B2 -2 193 156 9 873 249 57 0 0 chr6 37857650 37857685 -111659352 + (TATG)n Simple_repeat Simple_repeat 4 38 0 9 873 540 309 122 23 chr6 37857685 37857830 -111659207 - B3 SINE B2 -50 166 3 9 873 514 238 9 9 chr6 37857939 37858045 -111658992 + B1_Mur1 SINE Alu 42 147 -2 9 873 315 250 14 0 chr6 37858960 37859032 -111658005 - RLTR24 LTR ERV1 -454 75 3 9 873 221 242 9 152 chr6 37859777 37859889 -111657148 + B4 SINE B4 95 190 -102 9 873 222 118 0 0 chr6 37860137 37860171 -111656866 + (TTTCC)n Simple_repeat Simple_repeat 2 35 0 9 873 288 0 0 0 chr6 37860167 37860199 -111656838 + (TC)n Simple_repeat Simple_repeat 1 32 0 9 873 1062 101 95 6 chr6 37860199 37860378 -111656659 - B2_Mm2 SINE B2 0 195 1 9 873 820 155 20 47 chr6 37860431 37860580 -111656457 + B1_Mur2 SINE Alu 5 149 0 9 873 204 40 0 0 chr6 37860904 37860929 -111656108 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 9 873 1783 113 122 21 chr6 37861207 37861542 -111655495 + Lx LINE L1 6286 6654 0 9 873 297 239 147 15 chr6 37861637 37861705 -111655332 + ID4_ SINE ID 2 78 -5 9 873 568 129 79 0 chr6 37861736 37861837 -111655200 - B1_Mur4 SINE Alu -1 149 41 9 873 759 256 74 32 chr6 37861870 37862060 -111654977 - B3A SINE B2 0 198 1 9 873 660 343 15 64 chr6 37862123 37862388 -111654649 + B4 SINE B4 39 290 -2 9 873 478 270 81 5 chr6 37862494 37862691 -111654346 + L1M1 LINE L1 5350 5561 -742 9 873 267 338 14 0 chr6 37862714 37862785 -111654252 + ID4_ SINE ID 4 75 -8 9 873 1175 62 7 0 chr6 37862939 37863085 -111653952 + B1_Mm SINE Alu 1 147 0 9 873 523 293 19 24 chr6 37863103 37863313 -111653724 - B3 SINE B2 -5 211 3 9 873 207 0 0 0 chr6 37863408 37863431 -111653606 + (TC)n Simple_repeat Simple_repeat 2 24 0 9 873 365 243 53 18 chr6 37863589 37863702 -111653335 - RLTR25B LTR ERVK 0 1028 912 9 873 665 138 20 150 chr6 37863710 37863863 -111653174 - RLTR25B LTR ERVK -276 752 620 9 873 2091 181 25 80 chr6 37864426 37864900 -111652137 - RLTR25B LTR ERVK -580 448 1 9 873 481 226 29 0 chr6 37864900 37865000 -111652037 - RSINE1 SINE B4 -47 118 16 9 873 197 0 71 0 chr6 37865442 37865470 -111651567 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 9 873 341 282 87 81 chr6 37865479 37865664 -111651373 - MER20 DNA MER1_type -30 189 4 9 873 3886 128 71 6 chr6 37865727 37866363 -111650674 - RLTR33 LTR ERVK 0 678 2 9 873 368 228 60 49 chr6 37866552 37866674 -111650363 - B1_Mur2 SINE Alu 0 149 31 9 873 453 274 29 10 chr6 37866738 37866841 -111650196 - RSINE1 SINE B4 -60 105 1 9 873 621 228 17 9 chr6 37867097 37867212 -111649825 - B1_Mur2 SINE Alu -1 148 33 9 873 239 294 29 115 chr6 37867285 37867389 -111649648 - PB1D9 SINE Alu -2 118 24 9 873 437 305 22 22 chr6 37867455 37867589 -111649448 - RSINE1 SINE B4 -28 137 4 9 873 2598 75 91 30 chr6 37867687 37867885 -111649152 - BGLII_Mus LTR ERVK 0 422 190 9 873 511 15 29 0 chr6 37867885 37867953 -111649084 + (TC)n Simple_repeat Simple_repeat 1 70 0 9 873 2598 75 91 30 chr6 37867953 37868152 -111648885 - BGLII_Mus LTR ERVK -233 189 2 9 873 353 266 160 8 chr6 37868939 37869064 -111647973 - RSINE1 SINE B4 -19 146 3 9 873 366 253 61 40 chr6 37869137 37869236 -111647801 - B3A SINE B2 -16 182 82 9 873 715 241 7 0 chr6 37869744 37869889 -111647148 - B1_Mur2 SINE Alu 0 149 4 9 873 297 0 0 0 chr6 37869908 37869941 -111647096 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 9 873 1202 54 0 0 chr6 37869986 37870133 -111646904 - B1_Mus1 SINE Alu -1 147 1 9 873 623 241 68 25 chr6 37870288 37870331 -111646706 - B3A SINE B2 0 198 160 9 873 3342 35 5 0 chr6 37870331 37870725 -111646312 + MTA_Mm LTR MaLR 1 396 0 9 873 623 241 68 25 chr6 37870725 37870843 -111646194 - B3A SINE B2 -39 159 31 9 873 407 303 63 130 chr6 37871072 37871387 -111645650 - L1MC LINE L1 -1166 4980 4687 9 873 1132 199 238 32 chr6 37871401 37871830 -111645207 - RMER1B Other Other -20 1046 530 9 873 674 236 143 8 chr6 37871835 37872079 -111644958 - RMER1B Other Other -759 307 31 9 873 417 272 29 0 chr6 37872128 37872231 -111644806 - ID_B1 SINE B4 -7 217 112 9 873 2680 85 74 14 chr6 37872234 37872638 -111644399 + L1_Mus3 LINE L1 6197 6626 -12 9 873 1173 48 14 0 chr6 37872638 37872784 -111644253 + B1_Mus1 SINE Alu 1 148 0 9 873 2680 85 74 14 chr6 37872784 37872796 -111644241 + L1_Mus3 LINE L1 6627 6638 0 9 873 186 43 0 0 chr6 37872867 37872890 -111644147 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 9 873 207 0 0 0 chr6 37873183 37873206 -111643831 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 873 1144 62 7 7 chr6 37873217 37873362 -111643675 - B1_Mus2 SINE Alu 0 147 3 9 873 1957 204 21 3 chr6 37874157 37874523 -111642514 - RLTR18 LTR ERVK 0 616 244 9 873 480 314 36 58 chr6 37874523 37874746 -111642291 - RMER12 LTR ERVK 0 1322 1105 9 873 4271 166 30 25 chr6 37874894 37875766 -111641271 - RLTR22_Mur LTR ERVK -972 876 1 9 873 1350 132 72 8 chr6 37875766 37876003 -111641034 - RLTR18 LTR ERVK -364 252 1 9 873 1774 138 38 16 chr6 37876099 37876416 -111640621 - RMER4A LTR ERVK -139 327 4 9 873 1155 41 0 39 chr6 37876563 37876716 -111640321 - B1_Mm SINE Alu 0 147 1 9 873 457 304 81 64 chr6 37876716 37876951 -111640086 - B4A SINE B4 -40 252 14 9 873 901 50 0 0 chr6 37877291 37877411 -111639626 - B1_Mus2 SINE Alu 0 147 28 9 873 1498 156 150 56 chr6 37877871 37878231 -111638806 - ORR1B1 LTR MaLR 0 394 1 9 873 1234 34 0 0 chr6 37878479 37878625 -111638412 - B1_Mm SINE Alu 0 147 2 9 873 279 388 73 22 chr6 37878648 37878785 -111638252 + B4 SINE B4 65 208 -84 9 873 558 274 0 8 chr6 37878670 37878795 -111638242 + B1_Mur1 SINE Alu 6 129 -20 9 873 377 254 42 34 chr6 37878872 37878990 -111638047 - PB1D10 SINE Alu -1 119 1 9 873 1189 48 0 14 chr6 37879007 37879155 -111637882 - B1_Mus2 SINE Alu 0 147 2 9 873 1167 55 0 20 chr6 37879325 37879474 -111637563 - B1_Mm SINE Alu 0 147 2 9 873 643 225 0 8 chr6 37879493 37879614 -111637423 - PB1D9 SINE Alu 0 120 1 9 874 549 0 0 0 chr6 37880595 37880656 -111636381 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 874 239 174 319 0 chr6 37881585 37881654 -111635383 + PB1 SINE Alu 17 107 -20 9 874 402 211 168 61 chr6 37881676 37881807 -111635230 + B1_Mur1 SINE Alu 3 147 -2 9 874 243 79 0 0 chr6 37881856 37881894 -111635143 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 9 874 443 181 0 35 chr6 37881920 37882006 -111635031 - B1_Mur3 SINE Alu -17 132 50 9 874 2785 64 67 0 chr6 37882068 37882443 -111634594 + MTB LTR MaLR 1 400 0 9 874 27 29 0 0 chr6 37883036 37883070 -111633967 + AT_rich Low_complexity Low_complexity 1 34 0 9 874 240 213 0 21 chr6 37883449 37883497 -111633540 + CT-rich Low_complexity Low_complexity 2 48 0 9 874 1010 198 89 44 chr6 37883673 37883921 -111633116 - RLTR22_Mur LTR ERVK 0 1848 1590 9 874 2608 158 74 58 chr6 37884070 37884679 -111632358 - RLTR22_Mur LTR ERVK -855 993 375 9 874 330 154 15 15 chr6 37884676 37884742 -111632295 - RLTR22_Mur LTR ERVK -1779 69 4 9 874 637 266 110 19 chr6 37884763 37885073 -111631964 - L1M2 LINE L1 -606 5706 5369 1 874 452 244 150 42 chr6 37885074 37885241 -111631796 - B3A SINE B2 -9 186 2 1 874 709 119 0 0 chr6 37885268 37885369 -111631668 - B1_Mm SINE Alu 0 147 47 1 874 317 200 27 67 chr6 37885303 37885378 -111631659 - MT2B LTR ERVL -337 264 193 1 874 288 215 60 48 chr6 37885311 37885394 -111631643 - RLTR25B LTR ERVK -519 509 426 1 874 534 31 0 0 chr6 37885439 37885503 -111631534 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 874 1328 150 187 72 chr6 37886481 37886840 -111630197 - RLTR9D LTR ERVK -3 400 1 1 874 399 293 25 13 chr6 37887593 37887752 -111629285 + L1M2 LINE L1 5507 5667 -645 1 874 535 278 144 6 chr6 37888372 37888546 -111628491 - ID_B1 SINE B4 -26 198 1 1 874 227 348 125 0 chr6 37888829 37888941 -111628096 - L2a LINE L2 -1 3425 3300 1 874 499 294 114 38 chr6 37890222 37890406 -111626631 - B3A SINE B2 0 198 1 1 874 894 188 90 20 chr6 37890448 37890649 -111626388 - B3 SINE B2 -1 215 1 1 874 626 325 53 28 chr6 37890807 37891092 -111625945 - Lx9 LINE L1 -187 7457 7166 1 874 418 282 310 0 chr6 37891104 37891349 -111625688 - Lx8 LINE L1 -759 6714 6394 1 874 185 283 57 0 chr6 37891929 37891982 -111625055 - L2 LINE L2 -2610 809 754 1 874 875 260 49 0 chr6 37892189 37892393 -111624644 + B3 SINE B2 1 214 -2 1 874 411 144 92 10 chr6 37893170 37893268 -111623769 - B1_Mur2 SINE Alu -13 136 31 1 874 666 188 197 64 chr6 37893781 37893969 -111623068 - B3 SINE B2 -3 213 1 1 874 929 240 6 6 chr6 37894107 37894287 -111622750 - B3A SINE B2 -18 180 1 1 874 203 0 37 0 chr6 37896291 37896318 -111620719 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 874 260 103 26 0 chr6 37896463 37896502 -111620535 - B3A SINE B2 -158 40 1 1 874 216 189 13 39 chr6 37898101 37898178 -111618859 + (TTTG)n Simple_repeat Simple_repeat 3 77 0 1 874 1251 68 0 0 chr6 37898622 37898768 -111618269 + B1_Mus1 SINE Alu 3 148 0 1 874 21 0 0 0 chr6 37899562 37899583 -111617454 + AT_rich Low_complexity Low_complexity 1 21 0 1 874 4607 50 8 0 chr6 37900296 37900831 -111616206 - L1_Mus1 LINE L1 0 6567 6029 1 874 907 226 42 0 chr6 37902067 37902257 -111614780 - B3 SINE B2 -17 199 2 1 874 204 97 0 0 chr6 37902376 37902407 -111614630 + (T)n Simple_repeat Simple_repeat 1 31 0 1 874 23 0 0 0 chr6 37902537 37902560 -111614477 + AT_rich Low_complexity Low_complexity 1 23 0 1 874 1228 68 0 0 chr6 37902609 37902755 -111614282 + B1_Mm SINE Alu 2 147 0 1 874 307 254 28 14 chr6 37902910 37902982 -111614055 - MER105 DNA DNA -130 74 2 1 874 342 0 0 0 chr6 37903092 37903130 -111613907 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 874 567 226 0 53 chr6 37903253 37903384 -111613653 + B1_Mur4 SINE Alu 22 145 -5 1 874 536 241 25 17 chr6 37903777 37903895 -111613142 - RSINE1 SINE B4 0 165 47 1 874 349 172 0 0 chr6 37904204 37904268 -111612769 + B3A SINE B2 10 73 -125 1 874 537 268 82 10 chr6 37904262 37904458 -111612579 - RLTR45 LTR ERVK -8 474 265 1 874 276 288 0 83 chr6 37904679 37904751 -111612286 + B3 SINE B2 44 109 -107 1 874 25 0 0 0 chr6 37904827 37904852 -111612185 + AT_rich Low_complexity Low_complexity 1 25 0 1 874 265 295 147 37 chr6 37904922 37905031 -111612006 - RMER15 LTR ERVL -2 573 453 1 874 600 322 13 0 chr6 37905746 37905895 -111611142 - RSINE1 SINE B4 0 165 15 1 874 967 242 37 9 chr6 37906504 37906721 -111610316 - MER2 DNA MER2_type -1 344 122 1 874 420 171 26 0 chr6 37907220 37907296 -111609741 - MTC LTR MaLR -343 78 1 1 874 248 279 63 0 chr6 37908277 37908356 -111608681 + ID_B1 SINE B4 84 167 -57 1 874 1277 48 7 0 chr6 37908830 37908976 -111608061 - B1_Mm SINE Alu 0 147 1 1 874 882 290 68 24 chr6 37909028 37909279 -111607758 - B4A SINE B4 -20 272 11 1 874 223 190 0 23 chr6 37909379 37909422 -111607615 + GA-rich Low_complexity Low_complexity 1 42 0 1 874 428 304 20 0 chr6 37909603 37909705 -111607332 - B1F SINE Alu -12 137 34 1 874 386 247 62 0 chr6 37909768 37909865 -111607172 - PB1D7 SINE Alu 0 120 18 1 874 241 254 14 29 chr6 37909818 37909887 -111607150 - B4A SINE B4 -142 150 83 1 874 1528 62 0 49 chr6 37909997 37910201 -111606836 + B2_Mm2 SINE B2 2 195 0 1 874 802 236 48 70 chr6 37911065 37911293 -111605744 - B4 SINE B4 -69 223 1 1 874 262 176 188 0 chr6 37911534 37911603 -111605434 - L1MA4 LINE L1 -271 5912 5833 1 874 189 0 0 0 chr6 37911777 37911798 -111605239 + (T)n Simple_repeat Simple_repeat 1 21 0 1 874 207 162 0 0 chr6 37911889 37911926 -111605111 + (TATG)n Simple_repeat Simple_repeat 4 40 0 1 874 436 214 0 0 chr6 37912331 37912414 -111604623 - B1F2 SINE Alu -22 127 45 1 874 1529 79 5 0 chr6 37912465 37912655 -111604382 - B2_Mm1a SINE B2 0 193 3 1 874 741 188 0 0 chr6 37912694 37912843 -111604194 + (TATG)n Simple_repeat Simple_repeat 4 152 0 1 874 563 232 28 14 chr6 37913209 37913353 -111603684 - B1_Mur1 SINE Alu -1 148 3 1 874 580 234 27 0 chr6 37913430 37913541 -111603496 - B1_Mur1 SINE Alu -35 114 1 1 874 844 266 14 56 chr6 37913656 37913802 -111603235 - L1MA4 LINE L1 -674 5626 5491 1 874 354 23 0 0 chr6 37913802 37913845 -111603192 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 874 844 266 14 56 chr6 37913845 37913985 -111603052 - L1MA4 LINE L1 -810 5490 5352 1 874 516 228 48 89 chr6 37913994 37914124 -111602913 + L1MA5 LINE L1 5615 5780 -520 1 874 564 200 172 23 chr6 37914124 37914252 -111602785 + B1_Mus1 SINE Alu 2 148 0 1 874 516 208 40 110 chr6 37914252 37914318 -111602719 + L1MA5 LINE L1 5781 5838 -462 1 874 22 0 0 0 chr6 37914709 37914731 -111602306 + AT_rich Low_complexity Low_complexity 1 22 0 1 874 277 315 11 0 chr6 37915873 37915965 -111601072 + GA-rich Low_complexity Low_complexity 3 95 0 1 874 791 147 0 52 chr6 37916533 37916669 -111600368 - B1_Mus1 SINE Alu -6 142 14 1 874 387 205 0 49 chr6 37917268 37917350 -111599687 + ID_B1 SINE B4 89 166 -58 1 874 223 272 62 42 chr6 37917350 37917364 -111599673 + PB1D7 SINE Alu 8 105 -15 1 874 333 268 40 20 chr6 37917620 37917719 -111599318 - PB1D10 SINE Alu -12 105 5 1 874 183 100 0 0 chr6 37917740 37917770 -111599267 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 1 874 23 33 0 0 chr6 37917837 37917867 -111599170 + AT_rich Low_complexity Low_complexity 1 30 0 1 874 1091 191 14 37 chr6 37917867 37918084 -111598953 - B3 SINE B2 -4 212 1 1 874 21 0 0 0 chr6 37918396 37918417 -111598620 + AT_rich Low_complexity Low_complexity 1 21 0 1 874 21 0 0 0 chr6 37919944 37919965 -111597072 + GC_rich Low_complexity Low_complexity 1 21 0 1 874 445 263 70 71 chr6 37920092 37920112 -111596925 + ID_B1 SINE B4 66 142 -150 1 874 804 188 14 28 chr6 37920112 37920254 -111596783 + B1_Mur3 SINE Alu 9 148 -1 1 874 445 263 70 71 chr6 37920254 37920280 -111596757 + ID_B1 SINE B4 143 254 -38 1 874 526 240 9 28 chr6 37920510 37920617 -111596420 - B3 SINE B2 -111 105 1 1 874 3321 195 115 98 chr6 37921248 37922208 -111594829 + RMER1B Other Other 90 1065 -1 1 874 6038 74 86 5 chr6 37922658 37923755 -111593282 + L1VL2 LINE L1 74 1271 -2344 1 874 4632 14 2 12 chr6 37923755 37924253 -111592784 + MT2_Mm LTR ERVL 1 493 0 1 874 41264 16 14 0 chr6 37924253 37929540 -111587497 + MERVL-int LTR ERVL 1 5360 -125 1 874 368 179 46 35 chr6 37929540 37929627 -111587410 + ORR1A3-int LTR MaLR 553 640 -1323 1 874 322 0 0 0 chr6 37929627 37929665 -111587372 + MERVL-int LTR ERVL 5448 5485 0 1 874 4632 14 2 12 chr6 37929665 37930163 -111586874 + MT2_Mm LTR ERVL 1 493 0 1 874 10192 90 47 63 chr6 37930163 37931033 -111586004 + MusHAL1 LINE L1 364 1261 -1451 1 874 531 108 0 0 chr6 37931033 37931107 -111585930 + B1_Mur4 SINE Alu 71 144 -6 1 874 236 215 0 156 chr6 37931039 37931116 -111585921 + B4 SINE B4 165 229 -63 1 874 10192 90 47 63 chr6 37931116 37931914 -111585123 + MusHAL1 LINE L1 1262 2086 -626 1 874 412 230 87 13 chr6 37931921 37932071 -111584966 + RMER17B LTR ERVK 303 463 -495 1 874 437 194 188 31 chr6 37932859 37932987 -111584050 - B1_Mur2 SINE Alu 0 149 2 1 874 276 148 49 137 chr6 37932901 37933003 -111584034 - MT2B LTR ERVL -356 245 153 1 874 601 164 67 33 chr6 37933049 37933169 -111583868 + B1_Mus1 SINE Alu 25 148 0 1 874 260 255 264 0 chr6 37933240 37933346 -111583691 + MER2 DNA MER2_type 192 325 -20 1 874 1049 73 73 0 chr6 37933945 37934081 -111582956 + B1_Mm SINE Alu 2 147 0 1 874 591 219 0 24 chr6 37934189 37934315 -111582722 - ID_B1 SINE B4 -9 215 93 1 874 729 196 34 20 chr6 37934680 37934826 -111582211 - B1_Mur3 SINE Alu 0 149 2 1 874 340 164 0 18 chr6 37935204 37935260 -111581777 + PB1D7 SINE Alu 10 64 -56 1 874 230 37 53 53 chr6 37936143 37936200 -111580837 + (TTTTG)n Simple_repeat Simple_repeat 1 57 0 1 874 458 229 242 25 chr6 37936289 37936450 -111580587 + B3A SINE B2 1 196 -2 1 874 909 177 0 13 chr6 37937092 37937241 -111579796 - B1_Mus2 SINE Alu 0 147 1 1 874 182 180 140 0 chr6 37937532 37937582 -111579455 - MIR3 SINE MIR -23 185 129 1 874 376 317 32 48 chr6 37937820 37937946 -111579091 - ID_B1 SINE B4 -9 215 92 1 874 369 145 0 0 chr6 37937980 37938042 -111578995 + (CATA)n Simple_repeat Simple_repeat 3 64 0 1 874 2632 70 0 28 chr6 37938086 37938439 -111578598 + L1_Mus4 LINE L1 6030 6372 -264 1 874 539 259 122 7 chr6 37938448 37938596 -111578441 + MTD LTR MaLR 196 360 -59 1 874 213 121 0 0 chr6 37938596 37938629 -111578408 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 874 21 0 0 0 chr6 37939283 37939304 -111577733 + AT_rich Low_complexity Low_complexity 1 21 0 1 874 207 297 48 19 chr6 37939754 37939857 -111577180 - L2 LINE L2 -979 2440 2335 1 874 457 267 82 30 chr6 37939857 37939992 -111577045 + ID_B1 SINE B4 77 218 -6 1 874 998 211 53 0 chr6 37940138 37940328 -111576709 + B3 SINE B2 4 203 -13 1 874 198 71 0 0 chr6 37940373 37940401 -111576636 + (CCCCCA)n Simple_repeat Simple_repeat 4 31 0 1 874 6400 75 36 3 chr6 37941202 37942843 -111574194 + L1VL2 LINE L1 126 1826 -1789 1 874 291 289 0 0 chr6 37942987 37943063 -111573974 - PB1D10 SINE Alu -2 115 40 1 874 28 61 0 0 chr6 37943937 37943986 -111573051 + AT_rich Low_complexity Low_complexity 1 49 0 1 874 1390 72 33 0 chr6 37944086 37944266 -111572771 - B2_Mm1a SINE B2 -6 187 2 1 874 267 200 125 0 chr6 37944281 37944361 -111572676 + L1M2 LINE L1 2745 2834 -3309 1 874 583 322 19 19 chr6 37944551 37944763 -111572274 - B3 SINE B2 0 216 5 1 874 230 292 14 58 chr6 37945620 37945689 -111571348 + ID4_ SINE ID 18 83 0 1 874 1657 252 58 128 chr6 37945729 37946589 -111570448 + RLTR22_Mur LTR ERVK 4 803 -1045 1 874 1401 45 79 0 chr6 37946597 37946613 -111570424 - B2_Mm1a SINE B2 -2 191 176 1 874 387 0 0 0 chr6 37946613 37946656 -111570381 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 874 1401 45 79 0 chr6 37946656 37946816 -111570221 - B2_Mm1a SINE B2 -18 175 2 1 874 581 266 149 65 chr6 37946864 37947246 -111569791 + RLTR22_Mur LTR ERVK 1139 1552 -296 1 874 596 290 64 50 chr6 37947680 37947963 -111569074 + B4A SINE B4 2 288 -4 1 874 503 194 237 0 chr6 37948191 37948330 -111568707 + RLTR11A LTR ERVK 1 172 -356 1 874 652 161 0 0 chr6 37948316 37948434 -111568603 - RLTR11A LTR ERVK -113 415 298 1 874 1061 196 50 42 chr6 37948432 37948693 -111568344 + RLTR11A LTR ERVK 158 420 -108 1 874 489 153 319 8 chr6 37948673 37948792 -111568245 - RLTR11A LTR ERVK -355 173 18 1 874 368 100 114 0 chr6 37948804 37948874 -111568163 + ORR1B1 LTR MaLR 1 78 -316 1 874 1442 170 102 27 chr6 37948874 37949209 -111567828 + ORR1B2 LTR MaLR 16 377 -17 1 874 440 259 185 79 chr6 37949357 37949503 -111567534 + Lx9 LINE L1 900 1079 -6529 1 874 548 176 158 8 chr6 37949503 37949623 -111567414 + B1_Mur3 SINE Alu 1 138 -11 1 874 2280 78 31 21 chr6 37949623 37949950 -111567087 + Lx3_Mus LINE L1 6680 7009 0 1 874 9849 252 116 92 chr6 37949950 37950362 -111566675 + Lx9 LINE L1 1080 1479 -4368 1 874 1182 61 14 0 chr6 37950362 37950510 -111566527 + B1_Mur4 SINE Alu 1 150 0 1 874 9849 248 75 101 chr6 37950510 37952016 -111565021 + Lx9 LINE L1 1480 3024 -2823 1 874 1254 98 16 42 chr6 37952016 37952207 -111564830 + B2_Mm2 SINE B2 3 188 -7 1 874 760 168 64 21 chr6 37952214 37952354 -111564683 + B1_Mus1 SINE Alu 1 146 -2 1 874 9849 248 75 101 chr6 37952354 37952379 -111564658 + Lx9 LINE L1 3025 3049 -2798 1 874 742 95 0 0 chr6 37952379 37952484 -111564553 + RLTR9D LTR ERVK 1 105 -298 1 874 564 115 0 30 chr6 37952474 37952573 -111564464 + RLTR9D LTR ERVK 308 403 0 1 874 9849 248 75 101 chr6 37952573 37954739 -111562298 + Lx9 LINE L1 3050 5236 -611 1 874 668 226 104 33 chr6 37954739 37954922 -111562115 + B3A SINE B2 2 197 -1 1 874 9849 248 75 101 chr6 37954922 37955462 -111561575 + Lx9 LINE L1 5237 5799 -48 1 874 568 186 17 17 chr6 37955473 37955593 -111561444 + B1_Mur2 SINE Alu 25 144 -5 1 874 235 298 37 110 chr6 37955474 37955610 -111561427 + B4 SINE B4 111 236 -56 1 874 301 214 0 0 chr6 37955626 37955682 -111561355 + Lx9 LINE L1 5863 5918 -1555 1 874 225 0 0 0 chr6 37955932 37955957 -111561080 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 874 2895 284 80 22 chr6 37956036 37957047 -111559990 + Lx9 LINE L1 6246 7456 -188 1 874 456 19 0 0 chr6 37957047 37957100 -111559937 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 874 2442 309 93 22 chr6 37957100 37957234 -111559803 + Lx9 LINE L1 7329 7472 -1 1 874 438 69 0 0 chr6 37957525 37957583 -111559454 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 874 521 248 207 45 chr6 37957817 37958083 -111558954 + MLT1A0 LTR MaLR 19 327 -38 1 874 820 190 211 5 chr6 37958093 37958278 -111558759 - ID_B1 SINE B4 -1 223 1 1 874 188 0 74 0 chr6 37958541 37958568 -111558469 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 1 874 978 103 13 27 chr6 37958569 37958718 -111558319 - B1_Mus1 SINE Alu 0 148 2 1 874 515 309 5 86 chr6 37958830 37959028 -111558009 - B3A SINE B2 -15 183 2 1 874 180 111 0 0 chr6 37959523 37959550 -111557487 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1 874 1090 131 23 0 chr6 37960577 37960752 -111556285 + B2_Mm2 SINE B2 10 188 -7 1 874 1357 51 90 0 chr6 37960862 37961040 -111555997 - B2_Mm2 SINE B2 -1 194 1 1 874 671 264 25 0 chr6 37961517 37961676 -111555361 - RSINE1 SINE B4 0 165 3 1 874 284 294 75 127 chr6 37961811 37962064 -111554973 + ORR1E LTR MaLR 105 344 -15 1 874 848 226 43 58 chr6 37962573 37962780 -111554257 - B3 SINE B2 -12 204 1 1 874 1859 206 158 15 chr6 37962884 37963290 -111553747 + Lx9 LINE L1 7052 7491 -153 1 874 627 14 0 0 chr6 37963290 37963362 -111553675 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 874 1859 206 158 15 chr6 37963362 37963474 -111553563 + Lx9 LINE L1 7492 7643 -1 1 874 1885 151 3 12 chr6 37963529 37963849 -111553188 - MTC LTR MaLR 0 421 105 1 874 717 208 0 0 chr6 37963849 37963979 -111553058 + B3 SINE B2 1 130 -86 1 874 21 57 0 0 chr6 37964014 37964049 -111552988 + AT_rich Low_complexity Low_complexity 1 35 0 1 874 582 15 0 0 chr6 37964065 37964132 -111552905 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 1 874 430 237 0 0 chr6 37964134 37964231 -111552806 - MTC LTR MaLR -323 98 2 1 874 231 209 0 0 chr6 37965078 37965107 -111551930 + T-rich Low_complexity Low_complexity 39 67 0 1 874 505 234 148 0 chr6 37965107 37965235 -111551802 - B1_Mm SINE Alu 0 147 1 1 874 231 209 0 0 chr6 37965235 37965272 -111551765 + T-rich Low_complexity Low_complexity 2 38 0 1 874 487 234 274 19 chr6 37965439 37965596 -111551441 - ID_B1 SINE B4 -6 218 22 1 874 333 51 254 0 chr6 37965596 37965655 -111551382 + Lx9 LINE L1 6969 7042 -602 1 874 3703 171 66 83 chr6 37965654 37965783 -111551254 + Lx9 LINE L1 6323 6456 -1188 1 874 234 0 0 0 chr6 37965783 37965809 -111551228 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 1 874 3703 171 66 83 chr6 37965809 37966545 -111550492 + Lx9 LINE L1 6457 7173 -471 1 874 735 176 0 49 chr6 37966651 37966794 -111550243 - B1_Mur1 SINE Alu -5 144 9 1 874 421 325 42 69 chr6 37967380 37967592 -111549445 - L1M5 LINE L1 -487 5686 5484 1 874 1163 163 59 0 chr6 37967592 37967795 -111549242 - B3 SINE B2 0 216 2 1 874 421 295 63 37 chr6 37967795 37967974 -111549063 - L1M5 LINE L1 -690 5483 5305 1 874 495 294 58 32 chr6 37967974 37968164 -111548873 + B3A SINE B2 1 195 -3 1 874 216 200 45 9 chr6 37968204 37968315 -111548722 + (TA)n Simple_repeat Simple_repeat 2 116 0 1 874 560 225 92 0 chr6 37968390 37968532 -111548505 - ID_B1 SINE B4 0 224 70 1 874 210 71 0 0 chr6 37968816 37968844 -111548193 + (TAGGG)n Simple_repeat Simple_repeat 2 29 0 1 874 911 174 6 0 chr6 37969162 37969340 -111547697 + GA-rich Low_complexity Low_complexity 2 180 0 1 874 291 104 0 0 chr6 37969429 37969477 -111547560 + (TTGG)n Simple_repeat Simple_repeat 4 51 0 1 874 834 172 7 0 chr6 37969487 37969632 -111547405 - B1_Mus2 SINE Alu 0 147 2 1 874 698 231 71 5 chr6 37969939 37970135 -111546902 + B3 SINE B2 1 209 -7 1 874 461 216 48 16 chr6 37970490 37970634 -111546403 - ORR1D1 LTR MaLR -1 373 195 1 874 802 254 11 17 chr6 37970726 37970906 -111546131 + B3A SINE B2 3 181 -17 1 874 581 266 24 48 chr6 37970925 37971091 -111545946 + RSINE1 SINE B4 2 163 -2 1 874 37 0 0 0 chr6 37971264 37971301 -111545736 + AT_rich Low_complexity Low_complexity 1 37 0 1 874 293 257 0 0 chr6 37972206 37972276 -111544761 - ID4 SINE ID -13 70 1 1 874 294 272 25 0 chr6 37972503 37972584 -111544453 + CT-rich Low_complexity Low_complexity 4 86 0 1 874 821 211 19 54 chr6 37972584 37972789 -111544248 - ID_B1 SINE B4 -21 203 6 1 874 884 189 105 5 chr6 37973871 37974062 -111542975 - B3 SINE B2 -6 210 1 1 874 2027 140 51 17 chr6 37974536 37974891 -111542146 + ORR1B2 LTR MaLR 1 367 0 1 874 3407 173 82 7 chr6 37974891 37975637 -111541400 + ORR1B2-int LTR MaLR 1 802 -707 1 874 338 141 0 75 chr6 37975636 37975725 -111541312 + ORR1B2 LTR MaLR 247 371 -7 1 874 226 373 0 0 chr6 37975884 37975951 -111541086 + MER2 DNA MER2_type 11 77 -268 1 874 473 242 86 12 chr6 37975982 37976145 -111540892 + MER2 DNA MER2_type 173 344 -1 1 874 692 275 16 0 chr6 37977136 37977329 -111539708 + B3 SINE B2 9 204 -12 1 874 498 17 0 0 chr6 37977791 37977850 -111539187 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 1 874 32 67 0 0 chr6 37978242 37978302 -111538735 + AT_rich Low_complexity Low_complexity 1 60 0 1 874 423 130 0 0 chr6 37978302 37978379 -111538658 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 874 341 197 0 16 chr6 37978433 37978495 -111538542 - B3A SINE B2 -136 62 2 1 874 282 231 0 0 chr6 37978846 37978963 -111538074 + (TG)n Simple_repeat Simple_repeat 2 118 0 1 874 3416 35 5 0 chr6 37978971 37979365 -111537672 - MTA_Mm LTR MaLR 0 396 1 1 874 252 224 0 0 chr6 37979401 37979468 -111537569 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 874 210 37 0 0 chr6 37979468 37979495 -111537542 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 874 252 224 0 0 chr6 37979495 37979512 -111537525 + (TG)n Simple_repeat Simple_repeat 2 18 0 1 874 682 276 53 95 chr6 37980040 37980397 -111536640 + RMER5 LTR ERV1 1 342 -192 1 874 2284 146 21 0 chr6 37980439 37980823 -111536214 - MTC LTR MaLR -29 392 1 1 874 435 190 19 29 chr6 37980823 37980926 -111536111 + RMER5 LTR ERV1 417 518 -16 1 874 943 241 15 0 chr6 37981492 37981687 -111535350 + ID_B1 SINE B4 3 200 -24 1 874 2742 298 65 33 chr6 37982407 37984004 -111533033 - Lx7 LINE L1 -1604 6092 4440 1 874 2436 102 9 3 chr6 37984413 37984757 -111532280 - ORR1A1 LTR MaLR 0 346 1 1 874 2122 163 52 24 chr6 37984929 37985312 -111531725 + ORR1B1 LTR MaLR 1 394 0 1 874 3187 63 20 2 chr6 37985555 37985955 -111531082 + MTB_Mm LTR MaLR 1 407 0 1 874 1003 117 6 24 chr6 37986929 37987096 -111529941 + URR1B DNA MER1_type 61 224 -1 1 874 337 367 70 0 chr6 37987259 37987417 -111529620 + Tigger12c DNA MER2_type 7 175 -559 1 874 447 184 110 0 chr6 37987645 37987754 -111529283 - MTD LTR MaLR 0 419 299 1 874 2670 135 94 19 chr6 37987754 37988206 -111528831 - RLTR20A1 LTR ERVK 0 551 59 1 874 3108 56 8 10 chr6 37988206 37988603 -111528434 - MTA_Mm LTR MaLR 0 396 1 1 874 2670 135 94 19 chr6 37988603 37988663 -111528374 - RLTR20A1 LTR ERVK -493 58 1 1 874 817 282 55 32 chr6 37988664 37988917 -111528120 - MTD LTR MaLR -116 303 45 1 874 252 59 0 0 chr6 37989045 37989079 -111527958 + (CCAA)n Simple_repeat Simple_repeat 1 34 0 1 874 28 79 0 0 chr6 37989170 37989233 -111527804 + AT_rich Low_complexity Low_complexity 1 63 0 1 874 558 93 0 0 chr6 37989326 37989412 -111527625 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 874 553 242 22 36 chr6 37989412 37989549 -111527488 - B3 SINE B2 -51 165 31 1 874 385 235 134 25 chr6 37989564 37989721 -111527316 - B4A SINE B4 -65 227 54 1 874 320 222 183 48 chr6 37989728 37989832 -111527205 - PB1 SINE Alu -1 119 2 1 874 444 19 0 0 chr6 37990337 37990390 -111526647 + (ATTTG)n Simple_repeat Simple_repeat 4 56 0 1 874 415 305 8 0 chr6 37990563 37990681 -111526356 - ID_B1 SINE B4 -19 205 87 1 874 811 291 25 0 chr6 37991270 37991469 -111525568 - ID_B1 SINE B4 -20 204 1 1 874 545 275 166 16 chr6 37991762 37992009 -111525028 + B4 SINE B4 8 291 -1 1 874 327 256 110 43 chr6 37992108 37992271 -111524766 + MIR SINE MIR 40 213 -49 1 874 188 35 35 0 chr6 37992365 37992394 -111524643 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 874 219 135 54 0 chr6 37992408 37992445 -111524592 + PB1D9 SINE Alu 12 50 -70 1 874 189 0 0 0 chr6 37992461 37992482 -111524555 + (A)n Simple_repeat Simple_repeat 1 21 0 1 874 612 294 37 94 chr6 37992652 37992870 -111524167 + L1MA9 LINE L1 5421 5608 -704 1 874 1591 43 0 16 chr6 37992870 37993061 -111523976 - B2_Mm1t SINE B2 -5 188 1 1 874 612 294 49 84 chr6 37993061 37993327 -111523710 + L1MA9 LINE L1 5609 5898 -282 1 874 221 58 57 19 chr6 37993933 37993986 -111523051 + (GTTTG)n Simple_repeat Simple_repeat 2 56 0 1 874 754 234 0 0 chr6 37994496 37994654 -111522383 + B3 SINE B2 1 158 -58 1 874 198 0 0 0 chr6 37994659 37994681 -111522356 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 874 3001 35 0 41 chr6 37994808 37995220 -111521817 - MTB_Mm LTR MaLR 0 407 13 1 874 330 26 0 0 chr6 37995548 37995587 -111521450 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 874 988 238 32 29 chr6 37995642 37995923 -111521114 - B4 SINE B4 -10 282 1 1 874 310 183 16 48 chr6 37995991 37996054 -111520983 - Lx8 LINE L1 -250 7223 7163 1 874 257 209 15 0 chr6 37996060 37996127 -111520910 + GA-rich Low_complexity Low_complexity 3 70 0 1 874 517 274 97 14 chr6 37996473 37996680 -111520357 + B4A SINE B4 47 270 -22 1 874 468 77 0 0 chr6 37996715 37996780 -111520257 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 874 607 230 17 83 chr6 37997582 37997762 -111519275 + B4A SINE B4 7 174 -118 1 874 452 294 7 42 chr6 37998540 37998682 -111518355 + ID_B1 SINE B4 85 221 -3 1 874 438 269 46 0 chr6 37999461 37999591 -111517446 - Lx5 LINE L1 -35 7015 6880 1 874 1059 214 23 19 chr6 37999750 37999964 -111517073 + B3 SINE B2 2 216 0 1 874 504 304 127 65 chr6 38000910 38001248 -111515789 + MLT1A LTR MaLR 15 373 -1 1 874 1331 81 16 26 chr6 38001882 38002072 -111514965 + B2_Mm2 SINE B2 3 190 -5 2 874 214 231 0 0 chr6 38003171 38003185 -111513852 + A-rich Low_complexity Low_complexity 2 15 0 3 874 1222 47 0 7 chr6 38003185 38003334 -111513703 + B1_Mus1 SINE Alu 1 148 0 4 874 214 231 0 0 chr6 38003334 38003384 -111513653 + A-rich Low_complexity Low_complexity 16 65 0 5 874 760 191 8 0 chr6 38003888 38004019 -111513018 + B1F1 SINE Alu 5 136 -13 6 874 184 100 19 74 chr6 38004020 38004074 -111512963 + T-rich Low_complexity Low_complexity 4 54 0 7 874 1257 40 0 0 chr6 38004074 38004222 -111512815 - B1_Mus1 SINE Alu 0 148 1 8 874 657 291 108 93 chr6 38006841 38007027 -111510010 + MER2 DNA MER2_type 4 212 -133 9 874 847 146 0 28 chr6 38007027 38007168 -111509869 + B1_Mur3 SINE Alu 1 137 -12 1 874 657 291 108 93 chr6 38007168 38007315 -111509722 + MER2 DNA MER2_type 213 342 -3 9 874 194 0 39 0 chr6 38007520 38007546 -111509491 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 874 1291 27 0 0 chr6 38007550 38007697 -111509340 - B1_Mus1 SINE Alu 0 148 2 1 874 1638 37 0 0 chr6 38007759 38007949 -111509088 + B2_Mm1a SINE B2 2 191 -2 1 874 626 140 9 9 chr6 38007969 38008077 -111508960 - U13 snRNA snRNA 0 108 1 1 874 553 160 56 9 chr6 38008112 38008219 -111508818 - B1_Mus1 SINE Alu -1 147 36 1 874 326 23 0 23 chr6 38008231 38008275 -111508762 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1 874 498 237 32 48 chr6 38008284 38008408 -111508629 - RSINE1 SINE B4 -29 136 15 1 874 461 220 11 0 chr6 38009068 38009159 -111507878 + ORR1C2 LTR MaLR 293 384 0 1 874 442 315 69 34 chr6 38009469 38009673 -111507364 + MLT1I LTR MaLR 74 284 -127 1 874 917 243 73 16 chr6 38009852 38010044 -111506993 - ID_B1 SINE B4 -15 209 7 2 874 306 0 0 0 chr6 38010361 38010395 -111506642 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 109 454 296 77 71 chr6 38010764 38010946 -111506091 + B3A SINE B2 11 193 -5 2 875 269 250 0 0 chr6 38011324 38011370 -111505667 + RSINE1 SINE B4 11 56 -109 2 875 1322 193 226 1 chr6 38011370 38011712 -111505325 + MTD LTR MaLR 1 405 -14 2 875 989 64 41 0 chr6 38011810 38011982 -111505055 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 875 1370 234 118 0 chr6 38012532 38012861 -111504176 - ORR1D2 LTR MaLR 0 370 3 2 875 1744 232 116 11 chr6 38013171 38013620 -111503417 + RLTR1 LTR ERV1 129 624 0 2 875 214 250 16 16 chr6 38013800 38013861 -111503176 - MIR SINE MIR -34 228 168 2 875 204 125 0 0 chr6 38013947 38013979 -111503058 + (GAA)n Simple_repeat Simple_repeat 2 33 0 2 875 499 294 43 14 chr6 38014052 38014190 -111502847 - MIR SINE MIR -111 151 10 2 875 237 279 33 0 chr6 38014199 38014260 -111502777 + ID4 SINE ID 6 68 -15 3 875 234 88 0 0 chr6 38014550 38014584 -111502453 - ID4 SINE ID -2 81 48 3 875 293 104 0 8 chr6 38014779 38014832 -111502205 + B3 SINE B2 1 51 -147 3 875 234 0 0 0 chr6 38015031 38015057 -111501980 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 3 875 1717 200 65 45 chr6 38015065 38015463 -111501574 + MTD LTR MaLR 14 419 0 3 875 364 235 84 52 chr6 38015554 38015726 -111501311 - L1MA4A LINE L1 -1717 5927 5747 3 875 432 261 189 0 chr6 38015927 38016080 -111500957 + B3A SINE B2 1 182 -16 3 875 22 0 0 0 chr6 38016119 38016141 -111500896 + AT_rich Low_complexity Low_complexity 1 22 0 3 875 746 264 124 13 chr6 38016681 38016915 -111500122 + B4 SINE B4 17 276 -16 3 875 185 94 0 30 chr6 38017042 38017075 -111499962 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 875 225 65 0 0 chr6 38017089 38017120 -111499917 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 875 492 261 169 138 chr6 38017149 38017283 -111499754 - B4 SINE B4 -50 242 93 4 875 522 224 17 33 chr6 38017283 38017403 -111499634 - PB1D9 SINE Alu 0 120 3 4 875 492 261 169 138 chr6 38017403 38017499 -111499538 - B4 SINE B4 -200 92 5 4 875 4309 42 0 2 chr6 38017879 38018380 -111498657 + L1_Mm LINE L1 5282 5782 -101 4 875 4272 55 50 0 chr6 38018380 38018922 -111498115 + L1Md_F2 LINE L1 6014 6582 0 4 875 440 364 7 27 chr6 38019401 38019548 -111497489 - B4A SINE B4 -148 144 1 4 875 250 302 113 0 chr6 38020538 38020644 -111496393 + PB1D9 SINE Alu 2 119 -1 4 875 291 54 0 0 chr6 38020655 38020692 -111496345 + (GGGGA)n Simple_repeat Simple_repeat 4 40 0 4 875 558 155 0 0 chr6 38020727 38020824 -111496213 + GA-rich Low_complexity Low_complexity 2 98 0 4 875 848 234 52 24 chr6 38021519 38021729 -111495308 + B3 SINE B2 1 216 0 4 875 476 241 0 0 chr6 38023087 38023170 -111493867 + PB1D9 SINE Alu 24 106 -14 5 875 330 206 0 0 chr6 38023179 38023252 -111493785 + (ATG)n Simple_repeat Simple_repeat 3 75 0 5 875 228 254 94 16 chr6 38023252 38023316 -111493721 + ID4 SINE ID 6 74 -9 5 875 606 300 31 18 chr6 38023339 38023502 -111493535 + ID_B1 SINE B4 52 216 -8 5 875 22 56 0 0 chr6 38023504 38023540 -111493497 + AT_rich Low_complexity Low_complexity 1 36 0 5 875 488 206 142 62 chr6 38023716 38023892 -111493145 - B3A SINE B2 -7 191 2 5 875 651 207 22 22 chr6 38023916 38024054 -111492983 - B1_Mur2 SINE Alu 0 149 12 5 875 1703 156 125 34 chr6 38024832 38025216 -111491821 + MTD LTR MaLR 1 419 0 5 875 1481 236 8 61 chr6 38025369 38025743 -111491294 + ORR1E LTR MaLR 5 417 -4 5 875 1393 76 5 5 chr6 38026172 38026358 -111490679 + B2_Mm2 SINE B2 1 186 -9 5 875 367 282 36 9 chr6 38026382 38026493 -111490544 + PB1D10 SINE Alu 1 114 -3 6 875 390 129 0 0 chr6 38027053 38027115 -111489922 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 875 344 230 13 13 chr6 38027854 38027929 -111489108 - MIRm SINE MIR -125 151 77 6 875 354 284 229 55 chr6 38029170 38029474 -111487563 + MLT1C LTR MaLR 108 444 -23 6 875 231 329 40 0 chr6 38029625 38029701 -111487336 + LTR69 LTR ERVL 1 79 -509 6 875 397 198 51 20 chr6 38029740 38029838 -111487199 + LTR69 LTR ERVL 193 293 -295 6 875 649 286 52 0 chr6 38029840 38029994 -111487043 + RSINE1 SINE B4 4 165 0 6 875 273 197 0 0 chr6 38030003 38030069 -111486968 + (CATA)n Simple_repeat Simple_repeat 4 69 0 6 875 204 40 0 0 chr6 38030068 38030093 -111486944 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 875 513 272 22 22 chr6 38030708 38030847 -111486190 + B1F1 SINE Alu 4 142 -7 6 875 1298 106 26 0 chr6 38030858 38031047 -111485990 + B2_Mm2 SINE B2 1 194 -1 6 875 865 281 117 27 chr6 38031141 38031397 -111485640 + B4 SINE B4 14 292 0 7 875 426 317 20 7 chr6 38031423 38031569 -111485468 - MER3 DNA MER1_type -59 150 3 7 875 362 267 92 37 chr6 38032279 38032388 -111484649 + B1F SINE Alu 1 115 -34 7 875 313 232 0 0 chr6 38032383 38032452 -111484585 + ID4_ SINE ID 5 73 -10 7 875 183 42 0 0 chr6 38032454 38032478 -111484559 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 875 238 228 22 112 chr6 38032547 38032636 -111484401 - ID4 SINE ID -1 82 2 7 875 364 163 200 32 chr6 38033421 38033516 -111483521 + PB1D9 SINE Alu 5 115 -5 7 875 278 273 0 49 chr6 38033563 38033644 -111483393 + ID4_ SINE ID 3 79 -4 7 875 291 216 114 0 chr6 38033918 38034006 -111483031 + PB1D10 SINE Alu 16 113 -4 7 875 333 234 133 52 chr6 38034441 38034576 -111482461 + B1F SINE Alu 1 146 -3 7 875 763 158 0 0 chr6 38034677 38034791 -111482246 + B1_Mus2 SINE Alu 34 147 0 8 875 1542 58 16 0 chr6 38034862 38035052 -111481985 + B2_Mm2 SINE B2 2 194 -1 8 875 382 256 182 74 chr6 38035122 38035270 -111481767 - U1 snRNA snRNA -1 164 1 8 875 278 246 0 0 chr6 38035536 38035601 -111481436 + MER5A1 DNA MER1_type 38 102 -64 8 875 239 286 14 14 chr6 38035808 38035879 -111481158 + GA-rich Low_complexity Low_complexity 6 76 0 8 875 568 37 45 27 chr6 38036245 38036356 -111480681 + (TA)n Simple_repeat Simple_repeat 2 114 0 8 875 548 248 36 43 chr6 38036455 38036594 -111480443 + B1_Mus2 SINE Alu 1 138 -9 8 875 414 0 0 0 chr6 38036594 38036640 -111480397 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 875 878 174 0 39 chr6 38036838 38036993 -111480044 - B1_Mur3 SINE Alu 0 149 1 8 875 1251 224 23 29 chr6 38037386 38037735 -111479302 + RLTR15 LTR ERVK 1 347 -12 8 875 456 229 9 45 chr6 38038301 38038411 -111478626 - PB1D9 SINE Alu -10 110 5 9 875 399 21 0 0 chr6 38039265 38039313 -111477724 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 875 725 249 6 47 chr6 38039431 38039600 -111477437 + RSINE1 SINE B4 2 163 -2 9 875 901 144 13 20 chr6 38039698 38039847 -111477190 + B1_Mur2 SINE Alu 1 148 -1 9 875 877 223 14 24 chr6 38039915 38040126 -111476911 + B3 SINE B2 2 210 -6 9 875 432 0 0 0 chr6 38040211 38040259 -111476778 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 875 754 257 74 168 chr6 38040272 38040565 -111476472 - B4 SINE B4 -2 290 26 9 875 2338 136 42 3 chr6 38040565 38040942 -111476095 + ORR1B1 LTR MaLR 3 394 0 9 875 754 257 74 168 chr6 38040942 38040957 -111476080 - B4 SINE B4 -267 25 11 9 875 416 217 120 0 chr6 38041083 38041175 -111475862 + B3 SINE B2 108 210 -6 9 875 318 148 0 0 chr6 38041604 38041658 -111475379 + (T)n Simple_repeat Simple_repeat 1 54 0 9 875 1207 36 0 0 chr6 38041664 38041804 -111475233 - B1_Mus2 SINE Alu -7 140 1 1 875 207 0 0 0 chr6 38041814 38041837 -111475200 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 875 2138 147 91 10 chr6 38041873 38041945 -111475092 - MTC LTR MaLR 0 421 350 1 875 243 0 0 0 chr6 38041945 38041972 -111475065 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 875 2138 147 91 10 chr6 38041972 38042285 -111474752 - MTC LTR MaLR -72 349 5 1 875 512 204 157 13 chr6 38043120 38043279 -111473758 + B3A SINE B2 1 182 -16 1 875 1167 82 0 0 chr6 38044145 38044292 -111472745 - B1_Mus2 SINE Alu 0 147 1 1 875 264 296 28 0 chr6 38044317 38044388 -111472649 + ID4_ SINE ID 2 74 -9 1 875 265 172 44 59 chr6 38044329 38044397 -111472640 + tRNA-Ala-GCY_ tRNA tRNA 9 75 0 1 875 189 147 0 0 chr6 38044397 38044431 -111472606 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 1 875 274 270 21 53 chr6 38044963 38045057 -111471980 + RSINE1 SINE B4 4 94 -71 1 875 713 155 123 8 chr6 38045057 38045187 -111471850 + B1_Mus2 SINE Alu 1 145 -2 1 875 195 42 0 0 chr6 38045196 38045220 -111471817 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 875 421 188 25 0 chr6 38047318 38047398 -111469639 + ID4 SINE ID 1 82 -1 1 875 655 220 194 6 chr6 38047802 38047962 -111469075 - ID_B1 SINE B4 -33 191 2 1 875 445 249 84 91 chr6 38047962 38048271 -111468766 - L1MC5 LINE L1 -26 7935 7629 1 875 937 248 50 135 chr6 38048288 38048652 -111468385 + MTE2a LTR MaLR 8 340 -39 1 875 197 111 44 0 chr6 38048656 38048701 -111468336 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 875 225 0 0 0 chr6 38048831 38048856 -111468181 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 875 669 144 0 0 chr6 38048862 38048959 -111468078 - B1_Mur3 SINE Alu -52 97 1 1 875 426 304 43 9 chr6 38048959 38048978 -111468059 - B4 SINE B4 -106 186 67 1 875 1212 130 16 78 chr6 38049062 38049078 -111467959 + ORR1D1 LTR MaLR 1 18 -356 1 875 396 0 0 0 chr6 38049078 38049122 -111467915 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 875 1212 130 16 78 chr6 38049122 38049261 -111467776 + ORR1D1 LTR MaLR 19 150 -224 1 875 1095 80 0 0 chr6 38049261 38049399 -111467638 + B1_Mus1 SINE Alu 2 139 -9 1 875 237 65 0 0 chr6 38049399 38049430 -111467607 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 875 1212 130 16 78 chr6 38049430 38049514 -111467523 + ORR1D1 LTR MaLR 151 225 -149 1 875 392 176 40 129 chr6 38049534 38049554 -111467483 - ID_B1 SINE B4 -1 223 212 1 875 351 0 0 0 chr6 38049554 38049593 -111467444 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 1 875 392 176 40 129 chr6 38049593 38049696 -111467341 - ID_B1 SINE B4 -13 211 111 1 875 1245 307 52 12 chr6 38049696 38050121 -111466916 - ERVL-B4-int LTR ERVL -1807 3907 3466 1 875 298 229 100 40 chr6 38050124 38050224 -111466813 - ERVL-B4-int LTR ERVL -2333 3334 3229 1 875 491 311 103 28 chr6 38050327 38050671 -111466366 - MLT1C LTR MaLR -66 401 1 1 875 901 78 50 0 chr6 38050928 38051058 -111465979 + B2_Mm2 SINE B2 1 158 -37 1 875 195 42 0 0 chr6 38051059 38051083 -111465954 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1 875 1447 206 51 43 chr6 38051226 38051597 -111465440 + ORR1D1 LTR MaLR 1 374 0 1 875 312 208 0 0 chr6 38051605 38051653 -111465384 - B1_Mus2 SINE Alu -99 48 1 1 875 297 280 27 0 chr6 38051753 38051828 -111465209 - ID4 SINE ID -1 82 6 1 875 373 287 36 36 chr6 38051836 38051948 -111465089 - PB1D10 SINE Alu 0 117 6 1 875 228 320 106 39 chr6 38051855 38051959 -111465078 - B4A SINE B4 -101 191 81 1 875 1084 57 0 28 chr6 38053194 38053339 -111463698 + B1_Mus1 SINE Alu 8 148 0 1 875 351 113 0 0 chr6 38053342 38053395 -111463642 + (A)n Simple_repeat Simple_repeat 1 53 0 1 875 1118 181 4 39 chr6 38053530 38053760 -111463277 - URR1A DNA MER1_type -4 222 1 1 875 616 250 139 9 chr6 38054592 38054775 -111462262 + B3 SINE B2 4 193 0 1 875 2928 63 55 3 chr6 38054781 38055161 -111461876 - MTB LTR MaLR 0 400 1 1 875 354 325 0 0 chr6 38055845 38055922 -111461115 - L4 LINE RTE -1055 974 898 1 875 260 280 57 41 chr6 38056236 38056359 -111460678 + L4 LINE RTE 1901 2025 -4 1 875 446 329 77 40 chr6 38056442 38056664 -111460373 - MIRc SINE MIR -3 265 36 1 875 189 121 0 0 chr6 38057773 38057806 -111459231 + (C)n Simple_repeat Simple_repeat 1 33 0 1 875 383 214 98 39 chr6 38058013 38058115 -111458922 + Tigger7 DNA MER2_type 5 112 -2379 1 875 804 182 8 0 chr6 38058175 38058301 -111458736 - B3 SINE B2 -89 127 1 1 875 764 172 37 0 chr6 38058306 38058440 -111458597 - B1_Mus2 SINE Alu 0 147 9 1 875 588 235 54 77 chr6 38058450 38058671 -111458366 + Tigger7 DNA MER2_type 2265 2480 -11 1 875 186 282 69 23 chr6 38058848 38058935 -111458102 + L2c LINE L2 3053 3143 -244 1 875 509 300 49 16 chr6 38060352 38060535 -111456502 + MIR SINE MIR 73 261 -1 1 875 486 302 143 5 chr6 38061175 38061371 -111455666 + ID_B1 SINE B4 2 224 0 1 875 913 104 82 0 chr6 38061773 38061908 -111455129 + B1_Mus2 SINE Alu 2 147 0 1 875 309 117 0 0 chr6 38061908 38061968 -111455069 + (A)n Simple_repeat Simple_repeat 1 60 0 1 875 741 196 13 40 chr6 38062308 38062457 -111454580 - B1F2 SINE Alu 0 149 5 1 875 186 71 0 0 chr6 38062471 38062499 -111454538 + (T)n Simple_repeat Simple_repeat 1 28 0 1 875 1715 21 0 0 chr6 38062499 38062691 -111454346 - B2_Mm1t SINE B2 0 193 2 1 875 626 286 50 4 chr6 38062781 38063020 -111454017 + L1MA4A LINE L1 5680 5929 -374 1 875 471 269 118 76 chr6 38063059 38063296 -111453741 - MTD LTR MaLR -50 369 123 1 875 689 217 186 6 chr6 38063311 38063478 -111453559 + B3 SINE B2 12 208 -8 1 875 1444 55 0 6 chr6 38063484 38063665 -111453372 + B2_Mm2 SINE B2 2 181 -14 1 875 562 237 44 7 chr6 38063674 38063810 -111453227 - MTD LTR MaLR -278 141 1 1 875 517 262 71 6 chr6 38064023 38064192 -111452845 - MLT1B LTR MaLR -16 374 195 1 875 236 275 198 48 chr6 38064207 38064231 -111452806 - B4A SINE B4 -42 250 106 1 875 465 156 39 59 chr6 38064231 38064333 -111452704 - PB1D9 SINE Alu 0 120 21 1 875 188 360 112 14 chr6 38064938 38065152 -111451885 - L3 LINE CR1 -11 4478 4244 1 875 185 273 227 0 chr6 38065216 38065326 -111451711 + MIRb SINE MIR 26 160 -108 1 875 239 193 88 0 chr6 38065344 38065401 -111451636 + tRNA-Ala-GCY_ tRNA tRNA 7 68 -7 1 875 210 371 0 0 chr6 38065835 38065897 -111451140 - ID4 SINE ID -9 74 13 1 875 699 196 78 0 chr6 38066204 38066377 -111450660 - B3 SINE B2 -6 192 1 1 875 234 0 0 0 chr6 38066381 38066407 -111450630 + (T)n Simple_repeat Simple_repeat 1 26 0 1 875 400 200 35 206 chr6 38066641 38066697 -111450340 - B1F SINE Alu 0 149 9 1 875 428 243 0 26 chr6 38066697 38066811 -111450226 - ID_B1 SINE B4 -24 200 90 1 875 678 213 49 7 chr6 38067584 38067726 -111449311 - B3 SINE B2 -9 207 60 1 875 287 211 0 0 chr6 38067742 38067794 -111449243 + MTEb LTR MaLR 202 253 -126 1 875 517 271 111 0 chr6 38067822 38067966 -111449071 + MTE2b LTR MaLR 200 359 -20 1 875 627 214 18 5 chr6 38067980 38068111 -111448926 + B3 SINE B2 1 138 -55 1 875 461 250 29 0 chr6 38068382 38068486 -111448551 + U6 snRNA snRNA 1 107 0 1 875 1492 222 56 21 chr6 38068486 38068854 -111448183 + Lx9 LINE L1 7099 7480 -164 1 875 842 162 14 14 chr6 38068932 38069076 -111447961 + B1_Mur4 SINE Alu 2 145 -5 1 875 251 248 34 103 chr6 38069107 38069224 -111447813 - MER68 LTR ERVL -317 246 138 1 875 286 273 12 61 chr6 38069337 38069419 -111447618 - B4A SINE B4 0 292 215 1 875 495 327 155 27 chr6 38069509 38069767 -111447270 - B4A SINE B4 0 292 2 1 875 825 252 43 24 chr6 38069776 38069983 -111447054 - B3 SINE B2 0 216 6 1 875 968 133 7 14 chr6 38070099 38070244 -111446793 + B1_Mur4 SINE Alu 5 148 -2 1 875 392 191 11 0 chr6 38071373 38071462 -111445575 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 875 236 347 14 0 chr6 38071484 38071556 -111445481 - ID2 SINE ID -9 74 2 1 875 328 304 43 0 chr6 38071735 38071827 -111445210 - RSINE1 SINE B4 -34 131 36 1 875 314 278 82 82 chr6 38071934 38072142 -111444895 - B4 SINE B4 -77 215 8 1 875 493 279 0 0 chr6 38072299 38072410 -111444627 - PB1D10 SINE Alu -6 111 1 1 875 195 42 0 0 chr6 38075516 38075540 -111441497 + (A)n Simple_repeat Simple_repeat 1 24 0 1 875 543 31 0 0 chr6 38077999 38078064 -111438973 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 875 207 0 0 0 chr6 38079211 38079234 -111437803 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 1 875 1016 119 11 0 chr6 38079235 38079411 -111437626 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1 875 416 159 14 0 chr6 38079567 38079636 -111437401 + B2_Mm2 SINE B2 8 77 -118 1 875 222 245 24 162 chr6 38079996 38080160 -111436877 - B2_Mm1t SINE B2 0 216 50 1 875 1144 141 17 0 chr6 38080160 38080337 -111436700 + B2_Mm2 SINE B2 2 181 -14 1 875 224 230 8 85 chr6 38080337 38080423 -111436614 - B3A SINE B2 -137 79 3 1 875 321 253 50 12 chr6 38081545 38081625 -111435412 - ID2 SINE ID 0 83 1 1 875 758 139 116 0 chr6 38082344 38082462 -111434575 + B1_Mur3 SINE Alu 5 137 -12 1 875 219 36 0 0 chr6 38082462 38082490 -111434547 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 1 875 22 0 0 0 chr6 38082649 38082671 -111434366 + AT_rich Low_complexity Low_complexity 1 22 0 1 875 516 218 169 7 chr6 38082722 38082870 -111434167 + MTEa LTR MaLR 207 378 -1 1 875 281 260 0 9 chr6 38083182 38083287 -111433750 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 875 615 250 0 0 chr6 38083299 38083479 -111433558 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 875 638 226 73 0 chr6 38083643 38083780 -111433257 - B1_Mus2 SINE Alu 0 147 1 1 875 400 284 10 13 chr6 38083891 38083992 -111433045 - ID_B1 SINE B4 -200 92 1 2 875 937 198 49 15 chr6 38084028 38084233 -111432804 + B3 SINE B2 1 212 -4 2 875 3525 229 93 41 chr6 38084376 38084534 -111432503 - RMER1A Other Other 0 1030 855 2 875 1225 48 0 0 chr6 38084534 38084681 -111432356 + B1_Mus1 SINE Alu 2 148 0 2 875 3525 229 93 41 chr6 38084681 38085501 -111431536 - RMER1A Other Other -176 854 1 2 875 2087 152 100 0 chr6 38085748 38086089 -111430948 + ORR1C1 LTR MaLR 4 378 0 2 875 295 189 0 17 chr6 38086578 38086643 -111430394 + RSINE1 SINE B4 2 66 -99 2 875 420 190 0 41 chr6 38087197 38087318 -111429719 + GA-rich Low_complexity Low_complexity 2 117 0 2 875 225 0 0 0 chr6 38087448 38087473 -111429564 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 2 875 306 172 0 58 chr6 38087485 38087567 -111429470 - B2_Mm2 SINE B2 -107 109 34 2 875 1175 84 7 0 chr6 38087594 38087749 -111429288 - B2_Mm1t SINE B2 -37 156 1 2 875 374 307 38 38 chr6 38087823 38088009 -111429028 - Charlie1a DNA MER1_type -5 1450 1265 2 875 361 284 97 80 chr6 38088267 38088296 -111428741 - B2_Mm2 SINE B2 -16 179 150 2 875 185 0 0 39 chr6 38088296 38088322 -111428715 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 875 665 237 70 1 chr6 38088322 38088468 -111428569 - B3 SINE B2 -62 154 1 2 875 728 291 63 24 chr6 38088599 38088930 -111428107 - L1M5 LINE L1 -2132 4014 3671 2 875 465 19 0 0 chr6 38089016 38089070 -111427967 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 875 652 290 13 0 chr6 38089075 38089230 -111427807 - RSINE1 SINE B4 -6 159 3 2 875 217 147 29 0 chr6 38089243 38089277 -111427760 - RSINE1 SINE B4 -120 45 11 2 875 944 174 0 7 chr6 38089533 38089678 -111427359 + B1_Mur3 SINE Alu 1 145 -4 2 875 426 39 0 0 chr6 38089678 38089730 -111427307 + (GGGA)n Simple_repeat Simple_repeat 3 54 0 2 875 571 278 23 0 chr6 38089786 38089919 -111427118 - B1_Mur1 SINE Alu -7 142 7 2 875 954 149 7 13 chr6 38089959 38090109 -111426928 - B1_Mur4 SINE Alu 0 150 2 2 875 246 304 38 0 chr6 38090735 38090814 -111426223 + ID4 SINE ID 2 83 0 2 875 946 146 0 0 chr6 38090872 38091009 -111426028 - B1_Mur4 SINE Alu -13 137 1 2 875 487 247 97 80 chr6 38091148 38091324 -111425713 + ID_B1 SINE B4 33 211 -13 2 875 180 256 0 0 chr6 38091351 38091394 -111425643 + L2a LINE L2 3098 3140 -286 2 875 1093 108 7 0 chr6 38091612 38091760 -111425277 - B1_Mur4 SINE Alu 0 150 2 2 875 33 0 0 0 chr6 38091774 38091807 -111425230 + AT_rich Low_complexity Low_complexity 1 33 0 2 875 568 216 103 15 chr6 38093490 38093626 -111423411 - B1_Mur1 SINE Alu -1 148 1 2 875 233 246 192 24 chr6 38094080 38094205 -111422832 - RMER15 LTR ERVL -27 548 403 2 875 313 182 30 15 chr6 38094306 38094373 -111422664 - Lx8 LINE L1 -372 7101 7034 2 875 321 253 21 65 chr6 38094467 38094560 -111422477 + MER94 DNA AcHobo 31 119 -15 2 875 441 0 0 0 chr6 38094622 38094671 -111422366 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 875 547 301 96 10 chr6 38094749 38094947 -111422090 - MER58A DNA MER1_type -2 222 8 2 875 297 227 29 43 chr6 38095347 38095416 -111421621 + PB1 SINE Alu 52 119 -8 2 875 279 0 0 0 chr6 38095788 38095819 -111421218 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 875 390 91 0 0 chr6 38096511 38096566 -111420471 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 875 867 205 95 0 chr6 38097688 38097878 -111419159 - B3 SINE B2 -8 208 1 2 875 340 290 10 10 chr6 38098959 38099060 -111417977 + Lx8 LINE L1 7168 7268 -205 2 875 447 35 0 0 chr6 38099233 38099290 -111417747 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 875 278 267 46 65 chr6 38099297 38099405 -111417632 - PB1D10 SINE Alu -1 116 11 2 875 269 279 97 109 chr6 38099949 38100114 -111416923 + RSINE1 SINE B4 3 165 0 2 875 471 18 0 0 chr6 38100394 38100450 -111416587 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 875 405 0 0 0 chr6 38100450 38100494 -111416543 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 875 22 35 0 0 chr6 38101350 38101379 -111415658 + AT_rich Low_complexity Low_complexity 1 29 0 2 875 612 260 65 26 chr6 38101428 38101582 -111415455 + RSINE1 SINE B4 4 163 -2 2 875 1026 154 37 37 chr6 38101765 38101954 -111415083 + B3 SINE B2 28 216 0 2 875 475 266 22 59 chr6 38102650 38102786 -111414251 + B1_Mur2 SINE Alu 9 139 -10 2 875 320 274 125 10 chr6 38103243 38103339 -111413698 + PB1D10 SINE Alu 3 109 -8 2 875 495 259 36 0 chr6 38103801 38103913 -111413124 + B3A SINE B2 25 140 -58 2 875 180 0 0 0 chr6 38103916 38103936 -111413101 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 875 528 207 180 0 chr6 38103962 38104073 -111412964 + B1_Mur1 SINE Alu 1 131 -18 2 875 579 291 25 38 chr6 38104231 38104388 -111412649 + RSINE1 SINE B4 2 156 -9 2 875 365 0 0 22 chr6 38104388 38104434 -111412603 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2 875 577 252 37 22 chr6 38105598 38105732 -111411305 + RSINE1 SINE B4 14 149 -16 2 875 305 148 49 0 chr6 38105746 38105827 -111411210 + GA-rich Low_complexity Low_complexity 1 85 0 2 875 318 304 167 48 chr6 38106150 38106288 -111410749 - MER2 DNA MER2_type -59 286 121 2 875 1068 91 97 0 chr6 38106288 38106464 -111410573 + B2_Mm2 SINE B2 1 193 -2 2 875 318 304 167 48 chr6 38106464 38106553 -111410484 - MER2 DNA MER2_type -225 120 33 2 875 1138 124 84 0 chr6 38107325 38107503 -111409534 - B2_Mm2 SINE B2 -1 194 2 2 875 234 81 0 0 chr6 38107509 38107546 -111409491 + (T)n Simple_repeat Simple_repeat 1 37 0 2 875 720 194 124 0 chr6 38107577 38107706 -111409331 - RSINE1 SINE B4 -19 146 2 2 875 576 168 0 0 chr6 38109007 38109156 -111407881 + GA-rich Low_complexity Low_complexity 2 150 0 2 875 1077 180 48 19 chr6 38109866 38110076 -111406961 + B3 SINE B2 1 216 0 2 875 258 373 114 4 chr6 38110555 38110781 -111406256 + Charlie2b DNA MER1_type 156 407 -2375 2 875 324 64 0 0 chr6 38110781 38110828 -111406209 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 875 350 134 0 15 chr6 38110869 38110937 -111406100 + (TATG)n Simple_repeat Simple_repeat 2 68 0 2 875 671 319 126 82 chr6 38110966 38111251 -111405786 + Charlie2b DNA MER1_type 889 1156 -1626 2 875 1060 231 5 0 chr6 38111251 38111459 -111405578 + B3 SINE B2 1 209 -7 2 875 671 319 126 82 chr6 38111459 38111540 -111405497 + Charlie2b DNA MER1_type 1157 1239 -1543 2 875 1285 112 27 0 chr6 38111540 38111728 -111405309 - B2_Mm1a SINE B2 0 193 1 2 875 671 319 126 82 chr6 38111728 38111785 -111405252 + Charlie2b DNA MER1_type 1240 1303 -1479 2 875 443 75 0 29 chr6 38111785 38111854 -111405183 + (TATG)n Simple_repeat Simple_repeat 2 68 0 2 875 671 319 126 82 chr6 38111854 38112241 -111404796 + Charlie2b DNA MER1_type 1304 1735 -1047 2 875 3232 43 2 0 chr6 38114051 38114444 -111402593 - MTB LTR MaLR -6 394 1 2 875 2096 148 48 16 chr6 38114459 38114831 -111402206 + ORR1C2 LTR MaLR 1 384 0 2 875 351 0 0 0 chr6 38114886 38114925 -111402112 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 875 467 287 90 18 chr6 38116603 38116770 -111400267 - B4A SINE B4 -111 181 3 2 875 417 246 91 0 chr6 38116792 38116902 -111400135 - PB1D9 SINE Alu 0 120 1 2 875 216 0 0 0 chr6 38117735 38117759 -111399278 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 875 277 235 176 0 chr6 38118718 38118820 -111398217 - L2a LINE L2 -13 3413 3294 2 875 734 263 93 65 chr6 38118954 38119093 -111397944 + L1MB5 LINE L1 5643 5814 -360 2 875 676 226 140 35 chr6 38119093 38119350 -111397687 + B4A SINE B4 1 284 -8 2 875 734 262 94 72 chr6 38119350 38119597 -111397440 + L1MB5 LINE L1 5815 6077 -97 2 875 1197 68 0 0 chr6 38119926 38120072 -111396965 + B1_Mus1 SINE Alu 1 146 -2 2 875 234 0 0 0 chr6 38120073 38120099 -111396938 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 875 594 209 0 0 chr6 38120335 38120474 -111396563 + (CA)n Simple_repeat Simple_repeat 1 139 0 2 875 1110 178 25 5 chr6 38120474 38120672 -111396365 - B3 SINE B2 -14 202 1 2 875 940 217 23 0 chr6 38121946 38122121 -111394916 + B3 SINE B2 38 216 0 2 875 1025 226 19 5 chr6 38122345 38122558 -111394479 - B3 SINE B2 0 216 1 2 875 656 250 13 32 chr6 38123737 38123894 -111393143 + RSINE1 SINE B4 12 165 0 2 875 303 309 0 0 chr6 38123896 38124022 -111393015 + (CA)n Simple_repeat Simple_repeat 1 126 0 2 875 981 95 125 45 chr6 38125668 38125844 -111391193 - B2_Mm2 SINE B2 -2 193 4 2 875 314 210 0 0 chr6 38125981 38126043 -111390994 - B1_Mur1 SINE Alu -13 136 75 2 875 415 343 0 0 chr6 38126048 38126153 -111390884 - RSINE1 SINE B4 -30 135 31 2 875 598 263 140 0 chr6 38126540 38126711 -111390326 + B3A SINE B2 2 196 -2 2 875 3419 33 5 5 chr6 38129393 38129789 -111387248 + MTA_Mm LTR MaLR 1 396 0 2 875 506 262 118 30 chr6 38129852 38130021 -111387016 - B3A SINE B2 -13 185 2 2 875 841 148 42 0 chr6 38130098 38130240 -111386797 + B1_Mus1 SINE Alu 1 148 0 2 875 1119 82 0 13 chr6 38130402 38130416 -111386621 - B1_Mus2 SINE Alu 0 147 136 2 875 216 0 0 0 chr6 38130416 38130440 -111386597 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2 875 1119 82 0 13 chr6 38130440 38130574 -111386463 - B1_Mus2 SINE Alu -12 135 2 2 875 279 255 194 0 chr6 38131627 38131725 -111385312 - PB1D10 SINE Alu 0 117 1 2 875 387 0 0 0 chr6 38132040 38132083 -111384954 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 875 306 0 0 0 chr6 38132134 38132168 -111384869 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 875 762 172 0 69 chr6 38133714 38133858 -111383179 - B1_Mur2 SINE Alu -14 135 2 2 875 225 0 0 0 chr6 38133914 38133939 -111383098 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 875 798 158 89 0 chr6 38134235 38134381 -111382656 - B3 SINE B2 -1 215 57 2 875 667 286 147 79 chr6 38134494 38134641 -111382396 - L1MA5 LINE L1 -26 7295 7138 2 875 986 182 115 0 chr6 38134641 38134833 -111382204 + B3 SINE B2 3 216 0 3 875 667 286 147 79 chr6 38134833 38135320 -111381717 - L1MA5 LINE L1 -184 7137 6618 2 875 775 262 16 36 chr6 38135424 38135618 -111381419 + B3A SINE B2 1 190 -8 3 875 646 279 0 42 chr6 38135646 38135722 -111381315 + RSINE1 SINE B4 1 74 -91 3 875 2546 74 6 0 chr6 38135722 38136047 -111380990 + ORR1A2 LTR MaLR 1 327 0 3 875 646 279 0 42 chr6 38136047 38136112 -111380925 + RSINE1 SINE B4 75 136 -29 3 875 593 264 64 43 chr6 38136162 38136481 -111380556 + RLTR15 LTR ERVK 45 339 -20 3 875 1469 276 76 58 chr6 38136571 38136810 -111380227 - L1MA5 LINE L1 -763 6555 6340 2 875 905 272 72 19 chr6 38136810 38137072 -111379965 - B4A SINE B4 -14 278 3 3 875 1469 270 77 95 chr6 38137072 38137283 -111379754 - L1MA5 LINE L1 -825 6339 6106 2 875 244 0 56 0 chr6 38137283 38137319 -111379718 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 875 1469 270 77 95 chr6 38137319 38137857 -111379180 - L1MA5 LINE L1 -1059 6105 5568 2 875 263 360 11 17 chr6 38137856 38138031 -111379006 - L1MA5 LINE L1 -5053 2115 1942 2 875 442 290 188 1 chr6 38138032 38138218 -111378819 - B3A SINE B2 -5 211 1 3 875 323 278 0 0 chr6 38138835 38138907 -111378130 + PB1 SINE Alu 17 88 -39 3 875 305 309 103 69 chr6 38139146 38139379 -111377658 + L1MC5 LINE L1 7603 7843 -118 3 875 1053 211 111 55 chr6 38139384 38139655 -111377382 + B4 SINE B4 7 292 0 3 875 238 152 62 78 chr6 38139992 38140056 -111376981 - B3 SINE B2 -1 215 153 3 875 569 231 101 40 chr6 38140080 38140229 -111376808 - RSINE1 SINE B4 -2 163 6 3 875 1038 94 0 0 chr6 38140253 38140478 -111376559 + (CA)n Simple_repeat Simple_repeat 1 225 0 3 875 535 302 118 37 chr6 38141015 38141311 -111375726 - MER33 DNA MER1_type -3 321 2 3 876 524 265 163 12 chr6 38142353 38142525 -111374512 + B3A SINE B2 1 198 0 3 876 906 251 5 22 chr6 38142615 38142822 -111374215 - B3A SINE B2 -5 211 1 3 876 211 377 102 33 chr6 38144073 38144317 -111372720 - MIR SINE MIR -1 261 1 3 876 922 217 80 5 chr6 38147196 38147395 -111369642 + B3 SINE B2 3 216 0 3 876 251 324 29 0 chr6 38147808 38147876 -111369161 + ID4 SINE ID 6 75 -8 3 876 719 203 15 0 chr6 38147875 38148008 -111369029 - B3A SINE B2 -63 135 1 3 876 23 0 0 0 chr6 38148008 38148031 -111369006 + AT_rich Low_complexity Low_complexity 1 23 0 3 876 1038 233 14 0 chr6 38148338 38148548 -111368489 + B3 SINE B2 2 214 -2 3 876 243 0 0 0 chr6 38149911 38149938 -111367099 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 876 272 70 0 23 chr6 38150294 38150338 -111366699 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 876 700 215 25 51 chr6 38151812 38151969 -111365068 + B4 SINE B4 71 223 -69 3 876 214 48 70 23 chr6 38151974 38152017 -111365020 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 3 876 292 179 146 11 chr6 38152741 38152848 -111364189 + L1MC4a LINE L1 7468 7681 -314 3 876 367 290 52 62 chr6 38152877 38153161 -111363876 + RSINE1 SINE B4 28 292 0 3 876 2982 184 51 184 chr6 38153175 38153604 -111363433 - RMER1B Other Other -14 1052 580 3 876 486 0 0 0 chr6 38153604 38153658 -111363379 + (CCA)n Simple_repeat Simple_repeat 1 54 0 3 876 2982 184 51 184 chr6 38153658 38154402 -111362635 - RMER1B Other Other -487 579 35 3 876 268 264 42 42 chr6 38154450 38154545 -111362492 + L1MC4a LINE L1 7561 7655 -227 3 876 596 244 46 122 chr6 38154699 38154895 -111362142 - B3A SINE B2 -17 181 1 3 876 367 218 13 0 chr6 38157671 38157749 -111359288 + PB1D10 SINE Alu 39 117 0 3 876 570 230 80 22 chr6 38158213 38158351 -111358686 + B1_Mur2 SINE Alu 4 149 0 3 876 261 75 0 0 chr6 38158356 38158396 -111358641 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 876 1933 144 120 3 chr6 38158664 38159006 -111358031 + ORR1C2 LTR MaLR 1 382 -2 3 876 329 273 11 11 chr6 38159039 38159128 -111357909 + B1_Mur2 SINE Alu 5 93 -56 3 876 332 273 54 116 chr6 38159133 38159357 -111357680 - RMER2 LTR ERV1 -5 562 353 3 876 310 283 39 29 chr6 38159535 38159637 -111357400 + B1_Mur1 SINE Alu 47 149 0 3 876 972 223 37 0 chr6 38159658 38159846 -111357191 + B3 SINE B2 2 196 -20 3 876 223 128 21 21 chr6 38159958 38160006 -111357031 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 3 876 1193 41 7 7 chr6 38160006 38160153 -111356884 - B1_Mus1 SINE Alu -1 147 1 3 876 245 284 22 90 chr6 38160236 38160325 -111356712 - Charlie6 DNA MER1_type -1240 2260 2178 3 876 180 0 0 0 chr6 38160747 38160767 -111356270 + (G)n Simple_repeat Simple_repeat 1 20 0 3 876 1247 77 61 0 chr6 38160768 38160949 -111356088 + B2_Mm2 SINE B2 4 195 0 3 876 1220 68 0 0 chr6 38160956 38161104 -111355933 + B1_Mus1 SINE Alu 1 148 0 3 876 574 111 0 36 chr6 38161200 38161312 -111355725 + (GGGGA)n Simple_repeat Simple_repeat 1 108 0 3 876 377 277 39 29 chr6 38161456 38161560 -111355477 + PB1D10 SINE Alu 3 107 -10 3 876 584 177 114 15 chr6 38161810 38161942 -111355095 + B1_Mm SINE Alu 2 146 -1 3 876 1089 257 112 26 chr6 38162841 38163153 -111353884 - MTE2b LTR MaLR 0 379 41 3 876 1281 191 180 7 chr6 38163147 38163453 -111353584 + ORR1D1 LTR MaLR 5 363 -11 3 876 232 244 0 0 chr6 38163463 38163508 -111353529 - MTE2b LTR MaLR -332 47 3 3 876 829 249 124 75 chr6 38163604 38163654 -111353383 + MLT1A0 LTR MaLR 1 49 -316 3 876 2131 99 17 77 chr6 38163654 38164004 -111353033 + ORR1A4 LTR MaLR 1 329 0 3 876 829 249 124 75 chr6 38164004 38164301 -111352736 + MLT1A0 LTR MaLR 50 364 -1 3 876 899 231 61 82 chr6 38164814 38165093 -111351944 + B4 SINE B4 2 274 -18 3 876 1418 65 38 0 chr6 38165166 38165351 -111351686 + B2_Mm2 SINE B2 1 192 -3 3 876 180 0 0 0 chr6 38165600 38165620 -111351417 + (A)n Simple_repeat Simple_repeat 1 20 0 3 876 431 274 3 10 chr6 38166478 38166596 -111350441 + L1MA4A LINE L1 5630 5781 -519 3 876 1257 78 0 6 chr6 38166638 38166798 -111350239 + B2_Mm1a SINE B2 1 160 -33 3 876 312 48 0 0 chr6 38166798 38166840 -111350197 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 876 446 302 13 0 chr6 38166854 38167003 -111350034 + L1MA4A LINE L1 5786 5936 -367 3 876 241 191 0 0 chr6 38167107 38167149 -111349888 + L1MA5 LINE L1 5895 5936 -364 3 876 342 0 0 0 chr6 38167700 38167738 -111349299 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 876 1146 68 0 13 chr6 38167835 38167977 -111349060 + B1_Mus1 SINE Alu 1 142 -6 3 876 266 0 0 29 chr6 38167977 38168012 -111349025 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 876 668 200 68 54 chr6 38168075 38168223 -111348814 + B1_Mur4 SINE Alu 1 150 0 3 876 636 14 0 0 chr6 38168232 38168305 -111348732 + (GGGGA)n Simple_repeat Simple_repeat 4 76 0 3 876 635 285 13 6 chr6 38168307 38168466 -111348571 + RSINE1 SINE B4 2 161 -4 3 876 965 250 0 5 chr6 38168908 38169125 -111347912 + B3 SINE B2 1 216 0 3 876 405 0 0 0 chr6 38169750 38169795 -111347242 + (TTA)n Simple_repeat Simple_repeat 1 45 0 3 876 225 234 0 0 chr6 38169914 38169961 -111347076 - L1MA8 LINE L1 -56 6235 6189 3 876 986 48 8 0 chr6 38170049 38170173 -111346864 + B1_Mus1 SINE Alu 24 148 0 3 876 207 0 0 0 chr6 38170173 38170196 -111346841 + (A)n Simple_repeat Simple_repeat 1 23 0 3 876 360 0 0 0 chr6 38170279 38170319 -111346718 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 876 727 112 26 0 chr6 38170339 38170455 -111346582 - B1_Mur4 SINE Alu -31 119 1 3 876 261 266 66 17 chr6 38170471 38170647 -111346390 + L1MB5 LINE L1 5349 5529 -639 3 876 475 243 19 11 chr6 38170765 38170876 -111346161 + B1_Mur4 SINE Alu 1 145 -5 3 876 222 118 0 0 chr6 38170876 38170910 -111346127 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 876 384 22 0 0 chr6 38170919 38170964 -111346073 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 3 876 524 329 57 0 chr6 38171007 38171147 -111345890 - RSINE1 SINE B4 -17 148 1 3 876 1053 225 22 112 chr6 38171147 38171512 -111345525 + L1MB5 LINE L1 5662 5993 -181 3 876 5136 36 0 0 chr6 38171913 38172518 -111344519 + L1Md_F2 LINE L1 4982 5586 -297 3 876 8760 24 1 1 chr6 38172519 38173514 -111343523 + L1Md_F2 LINE L1 5588 6582 0 3 876 297 268 110 0 chr6 38173903 38173985 -111343052 + RSINE1 SINE B4 68 158 -7 3 876 181 262 59 59 chr6 38175304 38175389 -111341648 - MIRm SINE MIR -125 151 67 3 876 518 250 29 50 chr6 38175496 38175635 -111341402 + B3A SINE B2 62 197 -1 3 876 368 169 26 13 chr6 38175700 38175778 -111341259 + PB1D10 SINE Alu 37 115 -2 3 876 647 306 65 81 chr6 38176091 38176525 -111340512 + MLT1C LTR MaLR 1 427 -40 3 876 348 284 156 76 chr6 38176982 38177207 -111339830 + B4A SINE B4 50 292 0 3 876 1257 208 215 75 chr6 38178011 38178463 -111338574 + RMER15 LTR ERVL 30 553 -22 3 876 4532 110 31 89 chr6 38178463 38179263 -111337774 + RMER6A LTR ERVK 3 756 0 3 876 1257 208 215 75 chr6 38179263 38179289 -111337748 + RMER15 LTR ERVL 554 575 0 3 876 1547 128 18 75 chr6 38179337 38179617 -111337420 + ORR1B1 LTR MaLR 47 310 -84 3 876 643 164 10 0 chr6 38179615 38179719 -111337318 + 7SLRNA srpRNA srpRNA 200 304 -10 3 876 229 0 83 0 chr6 38179723 38179759 -111337278 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 3 876 953 131 20 14 chr6 38179776 38179923 -111337114 + B1_Mur3 SINE Alu 2 149 0 3 876 252 148 0 0 chr6 38179923 38179984 -111337053 + (A)n Simple_repeat Simple_repeat 1 61 0 3 876 495 141 75 21 chr6 38180262 38180356 -111336681 + PB1D7 SINE Alu 15 113 -7 3 876 333 241 110 22 chr6 38180863 38180999 -111336038 + L1ME3A LINE L1 6021 6168 -5 3 876 346 258 81 109 chr6 38181023 38181197 -111335840 + B2_Mm2 SINE B2 12 180 -15 3 876 405 0 0 0 chr6 38181234 38181279 -111335758 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 876 207 0 0 0 chr6 38181283 38181306 -111335731 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 3 876 1178 64 0 0 chr6 38181306 38181446 -111335591 - B1_Mus1 SINE Alu -8 140 1 3 876 536 234 154 105 chr6 38181453 38181615 -111335422 - B3A SINE B2 -5 193 24 3 876 272 263 0 50 chr6 38181634 38181714 -111335323 - ID4_ SINE ID -6 77 2 3 876 21 71 0 0 chr6 38181725 38181767 -111335270 + AT_rich Low_complexity Low_complexity 1 42 0 4 876 493 110 352 48 chr6 38181901 38182006 -111335031 + B1_Mus1 SINE Alu 1 137 -11 4 876 234 0 0 0 chr6 38182017 38182043 -111334994 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 4 876 363 253 304 11 chr6 38183123 38183290 -111333747 + B3A SINE B2 1 216 0 4 876 380 209 61 81 chr6 38183328 38183364 -111333673 + B1_Mur1 SINE Alu 53 83 -66 4 876 2459 95 3 0 chr6 38183364 38183690 -111333347 + ORR1A2 LTR MaLR 1 327 0 4 876 380 209 61 81 chr6 38183690 38183752 -111333285 + B1_Mur1 SINE Alu 84 149 0 4 876 839 136 19 58 chr6 38184032 38184188 -111332849 - B1_Mur4 SINE Alu 0 150 1 4 876 806 193 14 0 chr6 38184228 38184368 -111332669 - B1_Mur2 SINE Alu -6 143 2 4 876 353 348 56 14 chr6 38184474 38184617 -111332420 + RSINE1 SINE B4 5 153 -12 4 876 524 232 36 0 chr6 38185399 38185511 -111331526 + PB1D10 SINE Alu 1 116 -1 4 876 354 326 102 45 chr6 38185760 38185885 -111331152 + MER2 DNA MER2_type 86 222 -123 4 876 1473 43 43 0 chr6 38185885 38186070 -111330967 + B2_Mm1a SINE B2 1 193 0 4 876 354 326 102 45 chr6 38186070 38186188 -111330849 + MER2 DNA MER2_type 223 343 -2 4 876 1155 202 206 11 chr6 38186230 38186580 -111330457 - MTD LTR MaLR 0 419 2 4 876 831 225 168 68 chr6 38186722 38187014 -111330023 - MTD LTR MaLR -20 380 58 4 876 234 174 40 92 chr6 38187037 38187113 -111329924 + B1F SINE Alu 77 148 -1 4 876 210 71 0 0 chr6 38187442 38187470 -111329567 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 876 180 111 0 0 chr6 38187729 38187756 -111329281 + (A)n Simple_repeat Simple_repeat 1 27 0 4 876 803 233 149 11 chr6 38187861 38188196 -111328841 + L1MB2 LINE L1 5770 6174 -9 4 876 291 28 0 0 chr6 38188352 38188388 -111328649 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 876 306 276 144 87 chr6 38188761 38188902 -111328135 + L1ME4a LINE L1 5615 5767 -357 4 876 310 208 26 0 chr6 38188902 38188979 -111328058 + ID4 SINE ID 3 81 -2 4 876 306 276 144 87 chr6 38188979 38189135 -111327902 + L1ME4a LINE L1 5768 5929 -195 4 876 599 259 218 26 chr6 38189191 38189425 -111327612 + B4 SINE B4 2 280 -12 4 876 222 91 0 0 chr6 38189433 38189466 -111327571 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 876 1017 212 28 24 chr6 38191336 38191549 -111325488 - B3 SINE B2 0 216 3 4 876 338 330 44 18 chr6 38192172 38192286 -111324751 + MIR SINE MIR 76 192 -70 4 876 448 252 129 115 chr6 38192418 38192705 -111324332 - B4A SINE B4 0 292 2 4 876 483 342 48 48 chr6 38192771 38193063 -111323974 + L1ME4a LINE L1 5403 5694 -430 4 876 249 260 40 14 chr6 38193269 38193343 -111323694 + L1ME4a LINE L1 5971 6046 -78 4 876 251 370 37 0 chr6 38193520 38193628 -111323409 + L2a LINE L2 3020 3131 -295 4 876 594 262 69 0 chr6 38193665 38193825 -111323212 + MLT1C LTR MaLR 42 212 -255 4 876 296 328 75 35 chr6 38194200 38194427 -111322610 - L2a LINE L2 -96 3279 3039 4 876 340 128 0 25 chr6 38194620 38194700 -111322337 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 876 180 97 0 0 chr6 38194813 38194844 -111322193 + (A)n Simple_repeat Simple_repeat 1 31 0 4 876 216 143 0 28 chr6 38195687 38195723 -111321314 - MER5A DNA MER1_type -141 48 14 4 876 424 243 83 32 chr6 38196735 38196892 -111320145 + L1M2 LINE L1 5324 5488 -824 4 876 1437 65 43 0 chr6 38196974 38197160 -111319877 + B2_Mm2 SINE B2 2 195 0 4 876 590 225 33 0 chr6 38197565 38197685 -111319352 - RSINE1 SINE B4 -28 137 14 4 876 265 275 34 76 chr6 38197710 38197828 -111319209 - PB1D7 SINE Alu -4 116 4 4 876 904 229 47 5 chr6 38197860 38198053 -111318984 + ID_B1 SINE B4 24 224 0 4 876 291 54 0 0 chr6 38198171 38198208 -111318829 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 876 595 221 75 32 chr6 38198790 38198977 -111318060 + B2_Mm2 SINE B2 1 195 0 4 876 377 217 63 3 chr6 38199163 38199276 -111317761 - B1_Mur2 SINE Alu -3 117 1 4 876 352 303 58 6 chr6 38199551 38199707 -111317330 + RSINE1 SINE B4 2 165 0 4 876 784 210 87 62 chr6 38199740 38199948 -111317089 + ID_B1 SINE B4 5 217 -7 4 876 578 200 23 23 chr6 38200145 38200261 -111316776 + B1_Mur3 SINE Alu 20 137 -12 4 876 507 118 0 0 chr6 38200261 38200346 -111316691 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 4 876 578 200 23 23 chr6 38200346 38200357 -111316680 + B1_Mur3 SINE Alu 138 147 -2 4 876 426 143 0 0 chr6 38200646 38200723 -111316314 + (TGG)n Simple_repeat Simple_repeat 2 78 0 4 876 344 318 132 0 chr6 38200723 38200852 -111316185 + B1F SINE Alu 4 149 0 4 876 21 0 0 0 chr6 38201211 38201232 -111315805 + AT_rich Low_complexity Low_complexity 1 21 0 4 876 23 33 0 0 chr6 38204121 38204151 -111312886 + GC_rich Low_complexity Low_complexity 1 30 0 4 876 25 51 0 0 chr6 38204261 38204300 -111312737 + GC_rich Low_complexity Low_complexity 1 39 0 4 876 24 67 0 0 chr6 38204352 38204397 -111312640 + GC_rich Low_complexity Low_complexity 1 45 0 4 876 198 0 0 0 chr6 38205969 38205991 -111311046 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 876 605 320 112 11 chr6 38206375 38206662 -111310375 + MER115 DNA Tip100 60 375 -318 4 876 459 263 16 81 chr6 38206914 38207100 -111309937 + MTEb LTR MaLR 206 379 0 4 876 291 271 96 52 chr6 38207121 38207257 -111309780 - L2a LINE L2 -9 3417 3276 4 876 956 129 7 7 chr6 38207305 38207445 -111309592 + B1_Mur2 SINE Alu 2 141 -8 4 876 2868 136 42 83 chr6 38207727 38208272 -111308765 - RMER15 LTR ERVL -52 523 1 4 876 393 174 56 28 chr6 38208418 38208489 -111308548 + ID4_ SINE ID 8 80 -3 4 876 235 319 69 75 chr6 38208625 38208798 -111308239 - MER5B DNA MER1_type -3 175 4 4 876 313 356 0 0 chr6 38209121 38209225 -111307812 + L1M5 LINE L1 5503 5606 -634 4 876 548 253 202 17 chr6 38209276 38209449 -111307588 + B3 SINE B2 1 205 -11 4 876 380 20 20 0 chr6 38209449 38209498 -111307539 + (CATA)n Simple_repeat Simple_repeat 2 51 0 4 876 199 225 14 14 chr6 38209623 38209695 -111307342 + CT-rich Low_complexity Low_complexity 1 72 0 4 876 415 299 67 79 chr6 38209765 38209808 -111307229 - L1ME1 LINE L1 -28 6151 6114 4 876 1177 48 7 7 chr6 38209808 38209955 -111307082 + B1_Mus1 SINE Alu 1 147 -1 4 876 926 276 42 128 chr6 38209955 38210076 -111306961 - L1ME1 LINE L1 -66 6113 5987 4 876 489 62 0 0 chr6 38210076 38210141 -111306896 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 876 926 276 41 128 chr6 38210141 38210255 -111306782 - L1ME1 LINE L1 -168 5996 5884 4 876 333 47 0 0 chr6 38210255 38210298 -111306739 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 876 857 127 87 0 chr6 38210302 38210428 -111306609 - B1_Mur4 SINE Alu -13 137 1 4 876 961 265 33 89 chr6 38210428 38210619 -111306418 - L1ME1 LINE L1 -281 5883 5718 4 876 1706 26 0 0 chr6 38210619 38210812 -111306225 - B2_Mm1a SINE B2 0 193 1 4 876 961 260 29 69 chr6 38210812 38211059 -111305978 - L1ME1 LINE L1 -462 5717 5487 4 876 312 245 107 6 chr6 38211151 38211254 -111305783 - PB1 SINE Alu -2 125 13 4 876 396 312 55 29 chr6 38211371 38211645 -111305392 - L1ME1 LINE L1 -787 5359 5079 4 876 238 279 0 47 chr6 38211976 38212040 -111304997 + MTEa LTR MaLR 20 80 -299 4 876 448 212 121 0 chr6 38212035 38212134 -111304903 + B3A SINE B2 82 192 -6 4 876 352 215 290 0 chr6 38212319 38212412 -111304625 + PB1D7 SINE Alu 1 120 0 4 876 1001 212 68 9 chr6 38212862 38213081 -111303956 + B4A SINE B4 2 233 -59 4 876 536 222 86 0 chr6 38213137 38213254 -111303783 + RSINE1 SINE B4 3 129 -36 4 876 1963 185 39 37 chr6 38213803 38214213 -111302824 - MTD LTR MaLR -8 411 1 4 876 262 334 47 58 chr6 38214303 38214533 -111302504 + L2c LINE L2 3130 3387 0 4 876 787 253 108 61 chr6 38215156 38215434 -111301603 + B4A SINE B4 2 292 0 4 876 285 29 0 0 chr6 38215448 38215482 -111301555 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 4 876 353 282 121 0 chr6 38215490 38215614 -111301423 + MER3 DNA MER1_type 43 181 -28 4 876 350 298 80 45 chr6 38215709 38215885 -111301152 - L1M5 LINE L1 -2376 3770 3589 4 876 871 258 35 0 chr6 38216062 38216260 -111300777 - B3 SINE B2 -10 206 2 4 876 319 231 0 152 chr6 38216415 38216507 -111300530 - B4A SINE B4 0 292 215 4 876 3852 66 4 4 chr6 38216537 38217024 -111300013 + L1_Mus2 LINE L1 6066 6552 -14 4 876 933 78 55 0 chr6 38217025 38217153 -111299884 - B1_Mus1 SINE Alu -12 136 2 4 876 783 293 30 26 chr6 38217182 38217413 -111299624 + MTD LTR MaLR 1 232 -187 4 876 256 339 145 41 chr6 38217426 38217743 -111299294 - Zaphod DNA Tip100 -3439 592 243 4 876 958 111 27 14 chr6 38217769 38217915 -111299122 - B1_Mus1 SINE Alu 0 148 1 4 876 427 220 78 52 chr6 38217916 38218031 -111299006 - PB1D9 SINE Alu 0 120 3 4 876 515 206 49 0 chr6 38218094 38218196 -111298841 - PB1D10 SINE Alu 0 117 11 4 876 238 215 123 0 chr6 38218147 38218212 -111298825 - B4A SINE B4 -147 145 73 4 876 1460 78 5 0 chr6 38218480 38218672 -111298365 - B2_Mm1a SINE B2 0 193 1 4 876 978 87 0 0 chr6 38218782 38218909 -111298128 + B2_Mm2 SINE B2 1 127 -68 4 876 339 65 0 0 chr6 38218911 38218957 -111298080 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 876 1212 68 0 0 chr6 38218987 38219134 -111297903 + B1_Mus2 SINE Alu 1 147 0 4 876 356 175 0 0 chr6 38219162 38219219 -111297818 + tRNA-Ala-GCY_ tRNA tRNA 12 68 -7 4 876 198 0 0 0 chr6 38219784 38219806 -111297231 + (CCCCCA)n Simple_repeat Simple_repeat 4 25 0 4 876 600 14 0 0 chr6 38219908 38219977 -111297060 + (TTGG)n Simple_repeat Simple_repeat 3 71 0 4 876 843 185 16 1 chr6 38220015 38220185 -111296852 + ORR1C1 LTR MaLR 1 183 -191 4 876 479 73 79 22 chr6 38220186 38220325 -111296712 + CT-rich Low_complexity Low_complexity 1 147 0 4 876 1224 189 0 5 chr6 38220328 38220541 -111296496 + ORR1C1 LTR MaLR 166 377 -1 4 876 513 0 0 0 chr6 38220543 38220600 -111296437 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 876 892 180 214 0 chr6 38220932 38221110 -111295927 + B3 SINE B2 1 216 0 5 876 802 196 7 20 chr6 38221113 38221264 -111295773 + B1_Mur3 SINE Alu 1 149 0 5 876 420 266 71 91 chr6 38221317 38221351 -111295686 - ORR1D2 LTR MaLR -9 361 330 5 876 1251 102 11 0 chr6 38221351 38221528 -111295509 - B2_Mm1t SINE B2 -14 179 1 5 876 420 289 68 93 chr6 38221528 38221854 -111295183 - ORR1D2 LTR MaLR -41 329 16 5 876 1021 101 7 0 chr6 38221962 38222100 -111294937 + B1_Mus1 SINE Alu 2 140 -8 5 876 3199 94 181 99 chr6 38222334 38223063 -111293974 + RMER17A2 LTR ERVK 118 906 0 5 876 329 257 0 14 chr6 38223066 38223137 -111293900 + Tigger7 DNA MER2_type 92 161 -2330 5 876 222 105 0 0 chr6 38223238 38223276 -111293761 + (T)n Simple_repeat Simple_repeat 1 38 0 5 876 1114 50 43 0 chr6 38223276 38223416 -111293621 - B1_Mm SINE Alu 0 147 2 5 876 1419 18 0 6 chr6 38223427 38223598 -111293439 - B2_Mm1a SINE B2 0 193 24 5 876 332 267 101 51 chr6 38223905 38224043 -111292994 - MER74B LTR ERVL -415 207 63 5 876 1552 204 139 0 chr6 38224278 38224536 -111292501 - MTD LTR MaLR 0 419 122 5 876 570 54 0 0 chr6 38224536 38224610 -111292427 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 5 876 1552 204 139 0 chr6 38224610 38224719 -111292318 - MTD LTR MaLR -298 121 2 5 876 471 269 0 18 chr6 38224833 38224943 -111292094 - ID_B1 SINE B4 -116 108 1 5 876 1338 68 14 127 chr6 38224994 38225065 -111291972 - B2_Mm2 SINE B2 0 195 148 5 876 1288 20 0 0 chr6 38225065 38225212 -111291825 - B1_Mm SINE Alu 0 147 1 5 876 1338 68 14 127 chr6 38225212 38225360 -111291677 - B2_Mm2 SINE B2 -48 147 1 5 876 255 206 0 45 chr6 38225620 38225686 -111291351 + RMER15 LTR ERVL 404 466 -109 5 876 1010 24 8 0 chr6 38225853 38225976 -111291061 - B1_Mus2 SINE Alu 0 147 24 5 876 1062 229 58 49 chr6 38226080 38226426 -111290611 + RLTR20B3 LTR ERVK 4 325 -216 5 876 2906 30 0 6 chr6 38226438 38226777 -111290260 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 876 29374 15 1 2 chr6 38226777 38230017 -111287020 - IAPEz-int LTR ERVK 0 6481 3244 5 876 22233 35 40 14 chr6 38230009 38232685 -111284352 - IAPEz-int LTR ERVK -3730 2751 8 5 876 2906 30 0 6 chr6 38232685 38233024 -111284013 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 876 629 190 24 24 chr6 38233411 38233535 -111283502 - ID_B1 SINE B4 0 224 101 5 876 222 215 61 0 chr6 38233688 38233753 -111283284 + PB1 SINE Alu 44 125 -2 5 876 835 280 9 27 chr6 38233835 38234059 -111282978 + ID_B1 SINE B4 4 223 -1 5 876 1642 160 64 78 chr6 38234072 38234432 -111282605 + ORR1B1 LTR MaLR 1 355 -39 5 876 392 189 42 54 chr6 38234919 38235082 -111281955 + ORR1B1 LTR MaLR 186 386 -8 5 876 209 179 0 0 chr6 38235113 38235152 -111281885 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 876 649 0 25 0 chr6 38235282 38235363 -111281674 + (CTTG)n Simple_repeat Simple_repeat 1 83 0 5 876 828 130 15 30 chr6 38235364 38235499 -111281538 - B1_Mur2 SINE Alu -14 135 3 5 876 285 98 0 0 chr6 38236068 38236109 -111280928 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 876 592 207 81 0 chr6 38236110 38236221 -111280816 - RSINE1 SINE B4 -42 123 4 5 876 691 195 0 48 chr6 38236221 38236366 -111280671 - PB1D9 SINE Alu -17 132 1 5 876 234 258 16 0 chr6 38236732 38236794 -111280243 - MLT1A1 LTR MaLR -280 128 66 5 876 570 233 44 22 chr6 38236811 38236947 -111280090 + B3 SINE B2 76 214 -2 5 876 1185 112 0 0 chr6 38236956 38237117 -111279920 + B2_Mm2 SINE B2 1 161 -34 5 876 333 0 0 0 chr6 38237117 38237154 -111279883 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 5 876 441 235 8 25 chr6 38237174 38237292 -111279745 + PB1D10 SINE Alu 1 116 -1 5 876 28 0 0 0 chr6 38237848 38237876 -111279161 + AT_rich Low_complexity Low_complexity 1 28 0 5 876 398 102 34 0 chr6 38238121 38238180 -111278857 + B1_Mur1 SINE Alu 76 136 -13 5 876 314 152 0 154 chr6 38238126 38238204 -111278833 + ID_B1 SINE B4 159 224 0 5 876 804 115 6 173 chr6 38238219 38238398 -111278639 + B1_Mur3 SINE Alu 1 149 0 5 876 670 265 105 0 chr6 38238727 38238927 -111278110 + ID_B1 SINE B4 2 222 -2 5 876 541 306 7 0 chr6 38239015 38239159 -111277878 - ID_B1 SINE B4 -1 223 79 5 876 337 255 125 15 chr6 38239213 38239384 -111277653 + MER102a DNA MER1_type 105 312 -18 5 876 226 260 78 0 chr6 38239586 38239663 -111277374 + RSINE1 SINE B4 75 157 -8 5 876 536 284 21 0 chr6 38239777 38239918 -111277119 + ID_B1 SINE B4 79 222 -2 5 876 232 267 39 26 chr6 38240783 38240860 -111276177 + MER87 LTR ERV1 447 524 -17 5 876 246 297 40 26 chr6 38240897 38240973 -111276064 + ID SINE ID 4 80 -144 5 876 258 338 0 0 chr6 38241183 38241254 -111275783 - L4 LINE RTE -16 2013 1943 5 876 808 154 23 0 chr6 38241276 38241406 -111275631 - B1_Mur1 SINE Alu -5 144 12 5 876 471 198 9 82 chr6 38241316 38241426 -111275611 - MT2B LTR ERVL -344 257 156 5 876 234 259 0 17 chr6 38241451 38241510 -111275527 + ID4 SINE ID 10 67 -16 5 876 411 38 0 0 chr6 38241519 38241572 -111275465 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 876 249 288 50 0 chr6 38241763 38241843 -111275194 - Charlie18a DNA MER1_type -192 150 67 5 876 285 215 21 11 chr6 38241956 38242050 -111274987 + GA-rich Low_complexity Low_complexity 2 96 0 5 876 1636 117 248 10 chr6 38243403 38243563 -111273474 + ORR1C2 LTR MaLR 1 204 -180 5 876 672 54 0 0 chr6 38243563 38243656 -111273381 + (TC)n Simple_repeat Simple_repeat 1 93 0 5 876 1636 117 248 10 chr6 38243656 38243805 -111273232 + ORR1C2 LTR MaLR 205 384 0 5 876 279 0 0 0 chr6 38243809 38243840 -111273197 + (TTA)n Simple_repeat Simple_repeat 3 33 0 5 876 1039 154 6 6 chr6 38243840 38244010 -111273027 - B2_Mm2 SINE B2 -22 173 4 5 876 23 0 0 0 chr6 38244018 38244041 -111272996 + AT_rich Low_complexity Low_complexity 1 23 0 5 876 520 182 11 0 chr6 38244041 38244129 -111272908 - B3 SINE B2 -124 92 4 5 876 259 284 15 0 chr6 38244825 38244892 -111272145 + GA-rich Low_complexity Low_complexity 1 68 0 5 876 805 267 18 64 chr6 38245428 38245648 -111271389 - B4A SINE B4 -1 291 82 5 876 290 302 143 25 chr6 38245643 38245762 -111271275 - B3A SINE B2 0 198 66 5 876 385 243 196 0 chr6 38245755 38245862 -111271175 + ID_B1 SINE B4 21 148 -76 5 876 416 268 0 10 chr6 38245862 38245960 -111271077 - ID_B1 SINE B4 -127 97 1 5 876 983 33 0 0 chr6 38245997 38246117 -111270920 - B1_Mus1 SINE Alu -1 147 28 5 876 263 189 0 36 chr6 38246154 38246209 -111270828 - B4A SINE B4 -158 134 82 5 876 255 246 0 42 chr6 38246316 38246388 -111270649 - PB1D10 SINE Alu -1 116 48 5 876 354 215 0 0 chr6 38246418 38246497 -111270540 + CT-rich Low_complexity Low_complexity 2 80 0 5 876 427 307 43 28 chr6 38246545 38246686 -111270351 - B1F2 SINE Alu 0 149 7 5 876 704 194 99 33 chr6 38246960 38247141 -111269896 + B2_Mm2 SINE B2 1 193 -2 5 876 1364 83 39 0 chr6 38247146 38247326 -111269711 - B2_Mm2 SINE B2 -8 187 1 5 876 23 33 0 0 chr6 38247326 38247356 -111269681 + AT_rich Low_complexity Low_complexity 1 30 0 5 876 1463 17 90 0 chr6 38247505 38247682 -111269355 + B2_Mm1a SINE B2 1 193 0 5 876 189 0 0 0 chr6 38247692 38247713 -111269324 + (A)n Simple_repeat Simple_repeat 1 21 0 5 876 295 314 81 16 chr6 38247747 38247870 -111269167 + ID_B1 SINE B4 92 222 -2 5 876 22 70 0 0 chr6 38248997 38249040 -111267997 + GC_rich Low_complexity Low_complexity 1 43 0 5 876 490 244 0 36 chr6 38249439 38249579 -111267458 + ID_B1 SINE B4 84 218 -6 5 876 746 209 38 12 chr6 38249619 38249779 -111267258 - RLTR19 LTR ERVK 0 499 336 5 876 634 340 32 9 chr6 38250333 38250550 -111266487 + B4A SINE B4 2 223 -69 5 876 304 87 0 42 chr6 38250557 38250605 -111266432 - ORR1A3-int LTR MaLR -1287 676 631 5 876 261 211 0 0 chr6 38250619 38250671 -111266366 + RMER4A LTR ERVK 194 245 -221 5 876 1866 114 73 60 chr6 38250682 38250999 -111266038 + ORR1A4 LTR MaLR 1 321 -8 5 876 3936 119 3 3 chr6 38251003 38251591 -111265446 + ORR1A4-int LTR MaLR 1 588 -1375 5 876 7075 125 40 108 chr6 38251590 38253267 -111263770 + ORR1A4-int LTR MaLR 473 1792 0 5 876 1888 87 30 153 chr6 38253267 38253585 -111263452 + ORR1A4 LTR MaLR 1 284 -45 5 876 1177 124 48 0 chr6 38253585 38253746 -111263291 + B2_Mm2 SINE B2 1 162 -33 5 876 396 0 0 0 chr6 38253746 38253790 -111263247 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 5 876 1177 124 48 0 chr6 38253790 38253814 -111263223 + B2_Mm2 SINE B2 163 194 -1 5 876 1888 87 30 153 chr6 38253814 38253861 -111263176 + ORR1A4 LTR MaLR 285 321 -8 5 876 1168 133 81 5 chr6 38253866 38254063 -111262974 + RMER4A LTR ERVK 255 466 0 5 876 1155 55 7 20 chr6 38254131 38254280 -111262757 + B1_Mus2 SINE Alu 1 147 0 5 876 643 240 142 28 chr6 38254469 38254645 -111262392 - ID_B1 SINE B4 -24 200 5 5 876 747 109 27 0 chr6 38254644 38254754 -111262283 + ORR1A2 LTR MaLR 215 327 0 5 876 265 188 250 0 chr6 38254754 38254818 -111262219 - PB1D9 SINE Alu -40 80 1 5 876 255 61 0 0 chr6 38255037 38255070 -111261967 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 5 876 1280 76 30 70 chr6 38255070 38255269 -111261768 + B2_Mm2 SINE B2 5 195 0 5 876 273 351 22 52 chr6 38255554 38255689 -111261348 + MER20B DNA MER1_type 92 222 -561 5 876 433 293 115 11 chr6 38255970 38256153 -111260884 + MER20B DNA MER1_type 550 751 -32 5 876 1234 48 0 0 chr6 38256161 38256308 -111260729 + B1_Mus2 SINE Alu 1 147 0 5 876 216 0 0 0 chr6 38256308 38256332 -111260705 + (A)n Simple_repeat Simple_repeat 1 24 0 5 876 468 346 68 43 chr6 38256346 38256509 -111260528 + MER20B DNA MER1_type 54 220 -563 5 876 681 308 108 99 chr6 38257591 38257913 -111259124 + MTEa LTR MaLR 5 321 -58 5 876 1282 34 0 0 chr6 38257913 38258060 -111258977 - B1_Mus2 SINE Alu 0 147 1 5 876 681 308 108 99 chr6 38258060 38258109 -111258928 + MTEa LTR MaLR 322 379 0 5 876 1058 304 73 161 chr6 38258109 38258445 -111258592 + MTEa-int LTR MaLR 1 318 -1262 5 876 198 0 0 0 chr6 38258445 38258467 -111258570 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 5 876 1058 304 73 161 chr6 38258467 38258505 -111258532 + MTEa-int LTR MaLR 319 323 -1257 5 876 1361 82 16 5 chr6 38258505 38258689 -111258348 - B2_Mm2 SINE B2 -8 187 2 5 876 895 204 52 16 chr6 38258689 38258883 -111258154 - B3 SINE B2 -14 202 2 6 876 1058 304 73 161 chr6 38258883 38259181 -111257856 + MTEa-int LTR MaLR 324 614 -966 5 876 270 0 0 0 chr6 38259200 38259230 -111257807 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 876 667 256 53 64 chr6 38259246 38259434 -111257603 - B4 SINE B4 0 292 107 6 876 219 301 19 46 chr6 38259338 38259446 -111257591 - B1_Mur1 SINE Alu -34 115 11 6 876 443 194 21 11 chr6 38259783 38259877 -111257160 - B1_Mur2 SINE Alu -14 135 41 6 876 459 343 29 0 chr6 38259878 38260050 -111256987 + C-rich Low_complexity Low_complexity 2 178 0 6 876 861 168 30 0 chr6 38260089 38260220 -111256817 + B1_Mus1 SINE Alu 1 135 -13 6 876 216 0 0 0 chr6 38260222 38260246 -111256791 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 876 388 282 11 22 chr6 38260571 38260705 -111256332 - B1F2 SINE Alu 0 149 17 6 876 384 354 25 19 chr6 38262705 38262866 -111254171 + RSINE1 SINE B4 3 164 -1 6 876 228 67 0 0 chr6 38262873 38262903 -111254134 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 6 876 609 245 13 13 chr6 38263310 38263459 -111253578 + B1_Mur1 SINE Alu 1 149 0 6 876 1739 175 272 45 chr6 38263529 38263717 -111253320 + RMER6C LTR ERVK 1 312 -378 6 876 1330 72 61 0 chr6 38263717 38263898 -111253139 + B2_Mm2 SINE B2 4 195 0 6 876 1739 175 272 45 chr6 38263898 38264271 -111252766 + RMER6C LTR ERVK 313 689 -1 6 876 518 273 98 111 chr6 38264282 38264331 -111252706 + B4A SINE B4 48 86 -206 6 876 1680 32 0 0 chr6 38264331 38264521 -111252516 + B2_Mm1a SINE B2 1 190 -3 6 876 518 273 98 111 chr6 38264521 38264706 -111252331 + B4A SINE B4 87 279 -13 6 876 446 191 138 0 chr6 38264787 38264881 -111252156 - B3 SINE B2 -109 107 1 6 876 1182 22 0 0 chr6 38264912 38265046 -111251991 + B1_Mus2 SINE Alu 2 135 -12 6 876 243 0 0 0 chr6 38265047 38265074 -111251963 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 876 819 178 15 7 chr6 38266536 38266672 -111250365 - B1_Mur4 SINE Alu 0 150 14 6 876 404 247 320 4 chr6 38266796 38267068 -111249969 + L1ME1 LINE L1 5567 5924 -255 6 876 699 143 87 8 chr6 38267068 38267195 -111249842 + B1_Mur4 SINE Alu 1 137 -13 6 876 375 233 73 58 chr6 38267307 38267332 -111249705 + B4A SINE B4 79 217 -75 6 876 712 107 98 0 chr6 38267332 38267444 -111249593 + B1_Mur4 SINE Alu 18 140 -10 6 876 216 167 0 0 chr6 38267465 38267513 -111249524 + GA-rich Low_complexity Low_complexity 2 49 0 6 876 1146 42 0 14 chr6 38267584 38267729 -111249308 - B1_Mus1 SINE Alu 0 148 6 6 876 754 260 59 0 chr6 38267872 38268076 -111248961 + B3 SINE B2 1 216 0 6 876 450 202 37 57 chr6 38268222 38268353 -111248684 - PB1D9 SINE Alu 0 149 17 6 876 209 146 20 20 chr6 38268371 38268420 -111248617 + T-rich Low_complexity Low_complexity 5 53 0 6 876 898 147 7 0 chr6 38268437 38268573 -111248464 - B1_Mur4 SINE Alu -12 138 2 6 876 1047 217 13 90 chr6 38268630 38268937 -111248100 + MTD LTR MaLR 10 274 -145 6 876 3958 102 95 38 chr6 38270023 38270309 -111246728 + RMER6A LTR ERVK 1 332 -424 6 876 933 44 24 30 chr6 38270309 38270474 -111246563 + (GAGAA)n Simple_repeat Simple_repeat 5 168 0 6 876 3958 102 95 38 chr6 38270474 38270550 -111246487 + RMER6A LTR ERVK 333 405 -351 6 876 3128 75 65 48 chr6 38270550 38271024 -111246013 - RLTR45 LTR ERVK 0 482 1 6 876 3447 101 69 47 chr6 38271024 38271577 -111245460 + RMER2 LTR ERV1 3 567 0 6 876 3958 102 95 38 chr6 38271577 38271905 -111245132 + RMER6A LTR ERVK 406 731 -25 6 876 1172 93 6 0 chr6 38272146 38272318 -111244719 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 6 876 234 147 0 0 chr6 38272318 38272352 -111244685 - B2_Mm1a SINE B2 -37 156 123 6 876 1223 93 11 28 chr6 38272414 38272591 -111244446 - B2_Mm1a SINE B2 -18 175 2 6 876 201 147 0 0 chr6 38272705 38272739 -111244298 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 6 876 632 136 19 37 chr6 38272741 38272848 -111244189 - B1_Mur4 SINE Alu -2 148 44 6 876 244 208 12 111 chr6 38272790 38272871 -111244166 - RLTR25B LTR ERVK -530 498 426 6 876 268 331 27 116 chr6 38272857 38272896 -111244141 - ID_B1 SINE B4 0 224 91 6 876 518 235 42 7 chr6 38272896 38273004 -111244033 - B1_Mur1 SINE Alu -5 115 10 6 877 378 235 140 20 chr6 38273083 38273183 -111243854 - RSINE1 SINE B4 -15 150 39 6 877 622 223 25 0 chr6 38273176 38273297 -111243740 + RSINE1 SINE B4 6 129 -36 6 877 300 53 0 0 chr6 38273299 38273337 -111243700 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 877 1223 68 0 0 chr6 38273563 38273711 -111243326 + B1_Mus1 SINE Alu 1 148 0 6 877 232 0 0 95 chr6 38273711 38273753 -111243284 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 6 877 715 122 9 0 chr6 38275612 38275719 -111241318 + ORR1A4 LTR MaLR 1 108 -221 6 877 1077 90 7 7 chr6 38275719 38275865 -111241172 + B1_Mus1 SINE Alu 2 147 -1 6 877 1545 52 5 5 chr6 38275871 38276064 -111240973 + B2_Mm2 SINE B2 1 193 -2 6 877 243 354 24 0 chr6 38276082 38276164 -111240873 + Charlie1b DNA MER1_type 103 186 -337 6 877 296 296 23 29 chr6 38276175 38276349 -111240688 + (TG)n Simple_repeat Simple_repeat 2 174 0 6 877 387 307 64 25 chr6 38276378 38276535 -111240502 - RSINE1 SINE B4 0 165 3 6 877 275 214 198 30 chr6 38276543 38276644 -111240393 + Charlie1b DNA MER1_type 406 523 0 6 877 412 292 275 5 chr6 38277047 38277240 -111239797 - B4A SINE B4 0 292 48 6 877 1136 69 14 0 chr6 38277342 38277487 -111239550 + B1_Mm SINE Alu 1 147 0 6 877 942 304 18 14 chr6 38277541 38277821 -111239216 - B4 SINE B4 -6 286 6 6 877 26 0 0 0 chr6 38277833 38277859 -111239178 + AT_rich Low_complexity Low_complexity 1 26 0 6 877 595 187 27 1 chr6 38277864 38277990 -111239047 - B1_Mur3 SINE Alu -5 144 17 6 877 986 120 33 77 chr6 38278068 38278097 -111238940 - B2_Mm2 SINE B2 0 195 161 6 877 288 0 0 0 chr6 38278097 38278129 -111238908 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 6 877 986 120 33 77 chr6 38278129 38278179 -111238858 - B2_Mm2 SINE B2 -35 160 124 6 877 1204 49 169 12 chr6 38278179 38278345 -111238692 + B2_Mm1a SINE B2 2 193 0 6 877 986 120 33 77 chr6 38278345 38278445 -111238592 - B2_Mm2 SINE B2 -72 123 24 6 877 889 154 7 34 chr6 38278470 38278618 -111238419 - B1_Mur4 SINE Alu -1 149 6 6 877 348 250 12 0 chr6 38278668 38278748 -111238289 - RSINE1 SINE B4 -3 162 82 6 877 330 309 5 12 chr6 38278824 38278928 -111238109 - RSINE1 SINE B4 -187 105 1 6 877 714 137 103 16 chr6 38279464 38279590 -111237447 + B3 SINE B2 2 138 -78 6 877 231 114 0 0 chr6 38280008 38280052 -111236985 + (TTGG)n Simple_repeat Simple_repeat 4 47 0 6 877 1286 28 0 0 chr6 38280052 38280196 -111236841 - B1_Mm SINE Alu -2 145 2 6 877 681 187 0 0 chr6 38280196 38280330 -111236707 + (TA)n Simple_repeat Simple_repeat 2 135 0 6 877 278 219 156 25 chr6 38280371 38280493 -111236544 - Lx9 LINE L1 -50 7594 7457 6 877 418 285 151 0 chr6 38280520 38280699 -111236338 - B3 SINE B2 -10 206 1 6 877 227 244 0 0 chr6 38280806 38280851 -111236186 + G-rich Low_complexity Low_complexity 2 46 0 6 877 505 314 50 35 chr6 38280856 38281054 -111235983 + Lx8 LINE L1 7212 7412 -61 6 877 211 221 14 14 chr6 38281085 38281093 -111235944 + (TTATA)n Simple_repeat Simple_repeat 2 9 0 6 877 1468 54 16 16 chr6 38281093 38281281 -111235756 + B2_Mm2 SINE B2 1 188 -7 6 877 211 221 14 14 chr6 38281281 38281290 -111235747 + (TTATA)n Simple_repeat Simple_repeat 3 11 0 6 877 1281 47 18 6 chr6 38281290 38281460 -111235577 + L1Md_F3 LINE L1 6411 6582 -2 6 877 211 221 14 14 chr6 38281460 38281510 -111235527 + (TTATA)n Simple_repeat Simple_repeat 3 52 0 6 877 229 288 144 25 chr6 38281577 38281737 -111235300 + L1M3 LINE L1 5551 5729 -454 6 877 1372 203 93 126 chr6 38283683 38284223 -111232814 + RLTR11A2 LTR ERVK 3 524 -3 6 877 1194 35 21 0 chr6 38284223 38284365 -111232672 + B1_Mus2 SINE Alu 3 147 0 6 877 466 217 170 0 chr6 38284428 38284534 -111232503 + B1F SINE Alu 1 124 -25 6 877 1601 175 88 39 chr6 38284799 38285181 -111231856 + RMER16 LTR ERVK 1 533 0 6 877 504 192 237 8 chr6 38285632 38285763 -111231274 + RSINE1 SINE B4 3 163 -2 6 877 305 126 6 52 chr6 38285784 38285845 -111231192 + MTC LTR MaLR 3 64 -315 6 877 796 162 13 45 chr6 38285903 38286058 -111230979 - B1_Mur4 SINE Alu 0 150 1 6 877 987 129 7 0 chr6 38286216 38286356 -111230681 - B1_Mus2 SINE Alu -2 145 5 6 877 291 306 75 18 chr6 38286800 38286937 -111230100 + ID_B1 SINE B4 3 151 -73 6 877 387 0 0 0 chr6 38287256 38287299 -111229738 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6 877 406 166 305 2 chr6 38287314 38287431 -111229606 - B2_Mm2 SINE B2 -57 159 3 6 877 284 200 30 15 chr6 38287431 38287513 -111229524 - B1_Mus1 SINE Alu -70 80 1 6 877 394 290 28 0 chr6 38287573 38287680 -111229357 - PB1D10 SINE Alu -7 110 1 6 877 321 278 47 40 chr6 38287702 38287852 -111229185 - CYRA11_Mm Unknown Y-chromosome -284 333 183 6 877 724 121 8 8 chr6 38287736 38287853 -111229184 + URR1B DNA MER1_type 98 214 -11 6 877 1349 72 61 0 chr6 38287864 38288044 -111228993 - B2_Mm2 SINE B2 -4 191 1 6 877 200 204 136 0 chr6 38288541 38288585 -111228452 + MER5A DNA MER1_type 6 55 -134 6 877 346 341 39 8 chr6 38288616 38288649 -111228388 + ID SINE ID 50 86 -138 6 877 323 309 62 18 chr6 38288649 38288761 -111228276 + PB1D9 SINE Alu 3 119 -1 6 877 386 193 29 17 chr6 38288764 38288859 -111228178 + PB1D9 SINE Alu 4 95 -54 6 877 586 319 168 11 chr6 38289213 38289498 -111227539 + MLT1J LTR MaLR 9 338 -174 6 877 553 307 90 0 chr6 38289603 38289792 -111227245 - MER58A DNA MER1_type -18 206 1 6 877 913 154 0 14 chr6 38290026 38290171 -111226866 - B1_Mur1 SINE Alu -6 143 1 7 877 1281 95 39 0 chr6 38290546 38290725 -111226312 + B2_Mm2 SINE B2 2 187 -8 7 877 225 118 0 0 chr6 38290864 38290898 -111226139 + tRNA-Ala-GCA tRNA tRNA 12 45 -30 7 877 311 200 0 122 chr6 38291125 38291199 -111225838 - PB1D9 SINE Alu -15 105 41 7 877 250 176 38 38 chr6 38291154 38291207 -111225830 - MT2B LTR ERVL -361 240 188 7 877 186 43 0 0 chr6 38291207 38291230 -111225807 + (A)n Simple_repeat Simple_repeat 1 23 0 7 877 1169 77 0 0 chr6 38291232 38291375 -111225662 + B1_Mus1 SINE Alu 1 143 -5 7 877 1107 112 0 0 chr6 38291393 38291563 -111225474 + (GGAAA)n Simple_repeat Simple_repeat 2 171 0 7 877 555 90 0 0 chr6 38291563 38291641 -111225396 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 7 877 360 0 0 0 chr6 38292883 38292923 -111224114 + (TGGGGG)n Simple_repeat Simple_repeat 3 42 0 7 877 226 218 231 0 chr6 38293237 38293315 -111223722 + MER5A DNA MER1_type 1 96 -93 6 877 813 247 37 26 chr6 38294850 38295041 -111221996 + B3 SINE B2 1 193 -23 7 877 474 114 0 0 chr6 38295041 38295120 -111221917 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 877 201 74 0 0 chr6 38295507 38295534 -111221503 + (TGG)n Simple_repeat Simple_repeat 1 27 0 7 877 361 154 124 62 chr6 38295534 38295620 -111221417 + B1_Mur4 SINE Alu 56 150 0 7 877 212 59 0 29 chr6 38295622 38295657 -111221380 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 7 877 1032 75 0 93 chr6 38296107 38296269 -111220768 - B1_Mus1 SINE Alu 0 148 2 7 877 459 92 0 0 chr6 38296331 38296396 -111220641 + (TAG)n Simple_repeat Simple_repeat 1 65 0 7 877 349 239 24 57 chr6 38296461 38296585 -111220452 + PB1D9 SINE Alu 1 120 0 7 877 236 258 0 15 chr6 38296750 38296817 -111220220 + (TAAG)n Simple_repeat Simple_repeat 4 69 0 7 877 529 198 182 0 chr6 38296938 38297064 -111219973 - B1_Mur1 SINE Alu 0 149 1 7 877 343 293 149 36 chr6 38297315 38297510 -111219527 - MER115 DNA Tip100 -78 615 399 7 877 785 296 140 7 chr6 38297819 38298111 -111218926 - MER2 DNA MER2_type -1 344 14 7 877 897 178 7 0 chr6 38298245 38298391 -111218646 - B1_Mus1 SINE Alu -1 147 1 7 877 1223 41 0 0 chr6 38298426 38298572 -111218465 - B1_Mm SINE Alu 0 147 2 7 877 1442 84 11 0 chr6 38298599 38298790 -111218247 - B2_Mm1t SINE B2 0 193 1 7 877 334 317 11 90 chr6 38298810 38298987 -111218050 - RSINE1 SINE B4 -1 164 2 7 877 1294 67 73 0 chr6 38299034 38299213 -111217824 + B2_Mm1a SINE B2 2 193 0 7 877 202 198 93 103 chr6 38299319 38299426 -111217611 + MIRb SINE MIR 46 151 -117 7 877 938 183 96 5 chr6 38299444 38299642 -111217395 - B3 SINE B2 0 216 1 7 877 493 278 8 25 chr6 38299659 38299777 -111217260 + PB1D10 SINE Alu 2 117 0 7 877 1246 88 65 0 chr6 38300387 38300557 -111216480 + B2_Mm2 SINE B2 1 181 -14 7 877 391 91 0 15 chr6 38300592 38300659 -111216378 + B2_Mm1a SINE B2 127 192 -1 7 877 710 260 80 25 chr6 38300711 38300912 -111216125 + B3 SINE B2 5 216 0 7 877 426 303 98 0 chr6 38300923 38301055 -111215982 + B1_Mur1 SINE Alu 4 148 -1 7 877 684 257 37 23 chr6 38301393 38301608 -111215429 + ID_B1 SINE B4 1 218 -6 7 877 479 155 10 0 chr6 38301611 38301714 -111215323 + GA-rich Low_complexity Low_complexity 1 104 0 7 877 247 266 25 92 chr6 38302543 38302663 -111214374 + PB1 SINE Alu 5 116 -11 7 877 251 302 0 0 chr6 38302663 38302726 -111214311 + tRNA-Ala-GCY_ tRNA tRNA 13 75 0 7 877 612 0 0 0 chr6 38303084 38303152 -111213885 + (GAA)n Simple_repeat Simple_repeat 1 68 0 7 877 1216 104 44 0 chr6 38303588 38303771 -111213266 + URR1B DNA MER1_type 35 225 0 7 877 264 270 0 16 chr6 38305624 38305688 -111211349 + PB1D10 SINE Alu 1 63 -54 7 877 433 289 40 32 chr6 38305689 38305814 -111211223 + RSINE1 SINE B4 4 129 -36 7 877 235 217 22 0 chr6 38305817 38305863 -111211174 + CT-rich Low_complexity Low_complexity 3 49 0 7 877 1212 41 0 0 chr6 38306952 38307097 -111209940 + B1_Mus2 SINE Alu 2 146 -1 7 877 243 0 0 0 chr6 38307099 38307126 -111209911 + (A)n Simple_repeat Simple_repeat 1 27 0 7 877 516 186 230 0 chr6 38307142 38307303 -111209734 + B3A SINE B2 1 198 0 7 877 1217 28 7 14 chr6 38307308 38307455 -111209582 + B1_Mus2 SINE Alu 1 146 -1 7 877 32 0 0 0 chr6 38307455 38307487 -111209550 + AT_rich Low_complexity Low_complexity 1 32 0 7 877 360 43 0 0 chr6 38307707 38307753 -111209284 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 877 331 257 0 0 chr6 38307842 38307916 -111209121 + B3A SINE B2 3 76 -122 7 877 473 132 330 0 chr6 38308273 38308379 -111208658 - B1_Mur1 SINE Alu 0 149 9 7 877 1153 75 0 0 chr6 38309087 38309234 -111207803 + B1_Mm SINE Alu 1 147 0 7 877 1569 21 0 86 chr6 38309276 38309486 -111207551 + B2_Mm1t SINE B2 2 193 0 7 877 960 88 40 3 chr6 38309494 38309640 -111207397 + B2_Mm2 SINE B2 39 187 -11 7 877 798 92 28 5 chr6 38309818 38309938 -111207099 - B1_Mus1 SINE Alu 0 148 40 7 877 329 176 79 26 chr6 38309872 38309948 -111207089 - RLTR25B LTR ERVK -519 509 430 7 877 297 217 116 0 chr6 38309986 38310055 -111206982 + B1F SINE Alu 51 127 -22 7 877 422 211 9 0 chr6 38310056 38310165 -111206872 + GA-rich Low_complexity Low_complexity 1 110 0 7 877 1257 254 98 76 chr6 38310268 38310677 -111206360 - MTD LTR MaLR -1 418 1 7 877 453 19 0 0 chr6 38310889 38310943 -111206094 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 877 675 277 20 0 chr6 38310952 38311100 -111205937 - B3A SINE B2 -42 156 6 7 877 3859 169 64 58 chr6 38311466 38311863 -111205174 + RLTR25B LTR ERVK 11 414 -614 7 877 1132 49 0 77 chr6 38311863 38312019 -111205018 + B1_Mus2 SINE Alu 4 147 0 7 877 3859 169 64 58 chr6 38312019 38312464 -111204573 + RLTR25B LTR ERVK 415 858 -170 7 877 271 146 28 226 chr6 38312544 38312650 -111204387 + RLTR25B LTR ERVK 742 826 -202 7 877 250 243 267 16 chr6 38312652 38312787 -111204250 + B3 SINE B2 16 191 -7 7 877 26 23 0 23 chr6 38312790 38312807 -111204230 + AT_rich Low_complexity Low_complexity 1 17 0 7 877 1383 65 5 11 chr6 38312807 38312984 -111204053 + B2_Mm1a SINE B2 2 177 -16 7 877 1450 39 78 0 chr6 38312984 38313002 -111204035 - B2_Mm1a SINE B2 0 193 176 7 877 207 0 0 0 chr6 38313002 38313025 -111204012 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 877 1450 39 78 0 chr6 38313025 38313185 -111203852 - B2_Mm1a SINE B2 -18 175 2 7 877 26 23 0 23 chr6 38313193 38313219 -111203818 + AT_rich Low_complexity Low_complexity 1 26 0 7 877 1201 61 0 0 chr6 38313220 38313367 -111203670 + B1_Mus1 SINE Alu 2 148 0 7 877 2664 186 33 10 chr6 38313371 38313861 -111203176 + RMER15 LTR ERVL 58 558 -17 7 877 614 13 0 13 chr6 38313887 38313963 -111203074 + (GGAGAA)n Simple_repeat Simple_repeat 3 77 0 7 877 318 229 0 0 chr6 38313963 38314033 -111203004 + (CGGA)n Simple_repeat Simple_repeat 3 72 0 7 877 261 0 0 0 chr6 38314057 38314086 -111202951 + (GGA)n Simple_repeat Simple_repeat 1 29 0 7 877 527 213 54 54 chr6 38314087 38314216 -111202821 + MTD LTR MaLR 18 146 -273 7 877 767 192 40 8 chr6 38314216 38314454 -111202583 - RLTR28 LTR ERVL 0 524 243 7 877 25 0 0 0 chr6 38314636 38314661 -111202376 + AT_rich Low_complexity Low_complexity 1 25 0 7 877 1488 58 16 0 chr6 38315511 38315701 -111201336 - B2_Mm1t SINE B2 0 193 1 7 877 1317 119 55 34 chr6 38315980 38316215 -111200822 - RLTR28 LTR ERVL -267 257 18 7 877 904 221 86 90 chr6 38316213 38316408 -111200629 + MTD LTR MaLR 143 341 -78 7 877 2636 70 173 141 chr6 38316408 38316904 -111200133 + RLTR1B LTR ERV1 1 512 0 7 877 904 221 86 90 chr6 38316904 38316986 -111200051 + MTD LTR MaLR 342 419 0 7 877 277 198 165 47 chr6 38316991 38317076 -111199961 + MLT1A1 LTR MaLR 314 408 0 7 877 357 43 0 0 chr6 38317267 38317314 -111199723 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 877 687 193 0 16 chr6 38317314 38317435 -111199602 - RSINE1 SINE B4 -41 124 6 7 877 183 42 0 0 chr6 38317455 38317479 -111199558 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 7 877 342 0 0 0 chr6 38317496 38317534 -111199503 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 877 576 0 0 0 chr6 38317534 38317598 -111199439 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 877 425 294 37 0 chr6 38317658 38317767 -111199270 + RSINE1 SINE B4 3 115 -50 7 877 279 0 0 0 chr6 38317767 38317798 -111199239 + (TC)n Simple_repeat Simple_repeat 1 31 0 7 877 713 101 0 0 chr6 38317801 38317900 -111199137 - B1_Mus2 SINE Alu -7 140 42 7 877 242 200 69 59 chr6 38317843 38317944 -111199093 - RLTR25B LTR ERVK -530 498 397 7 877 324 233 0 0 chr6 38317945 38318065 -111198972 + CT-rich Low_complexity Low_complexity 2 121 0 7 877 310 164 0 35 chr6 38318070 38318127 -111198910 - B1_Mur4 SINE Alu -90 60 6 7 877 3536 179 72 92 chr6 38318867 38319650 -111197387 + RMER19B LTR ERVK 1 767 -135 7 877 698 265 10 25 chr6 38320022 38320223 -111196814 + B3A SINE B2 1 198 0 7 877 2245 210 41 86 chr6 38320518 38320626 -111196411 + RMER19C LTR ERVK 1 112 -499 7 877 279 0 0 0 chr6 38320626 38320657 -111196380 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 7 877 2245 210 41 86 chr6 38320657 38321152 -111195885 + RMER19C LTR ERVK 113 577 -34 7 877 890 180 54 11 chr6 38321157 38321342 -111195695 + B2_Mm2 SINE B2 1 193 -2 7 877 627 221 0 0 chr6 38321338 38321442 -111195595 + B3 SINE B2 27 130 -86 7 877 459 100 0 0 chr6 38321542 38321612 -111195425 + (T)n Simple_repeat Simple_repeat 1 70 0 7 877 1246 34 0 20 chr6 38321613 38321763 -111195274 - B1_Mm SINE Alu 0 147 1 7 877 766 160 0 8 chr6 38322161 38322287 -111194750 - B1_Mur3 SINE Alu -13 136 12 8 877 659 206 88 7 chr6 38322322 38322459 -111194578 - B1_Mur4 SINE Alu 0 150 3 8 877 264 227 103 35 chr6 38322791 38322885 -111194152 - PB1 SINE Alu -18 109 3 8 877 321 259 115 49 chr6 38323341 38323463 -111193574 - L1MD LINE L1 -2934 3212 3083 8 877 1681 31 0 0 chr6 38323464 38323656 -111193381 - B2_Mm1a SINE B2 0 193 2 8 877 1602 47 0 0 chr6 38323672 38323863 -111193174 - B2_Mm1t SINE B2 -1 192 2 8 877 971 164 65 5 chr6 38323864 38324048 -111192989 - B2_Mm2 SINE B2 0 195 1 8 877 1352 81 22 0 chr6 38324152 38324337 -111192700 + B2_Mm1a SINE B2 2 190 -3 8 877 719 276 237 3 chr6 38324805 38325121 -111191916 + MLT1F LTR MaLR 5 394 -154 8 877 1112 70 125 28 chr6 38325170 38325346 -111191691 - B2_Mm2 SINE B2 -2 193 1 8 877 814 103 0 0 chr6 38325489 38325605 -111191432 - URR1B DNA MER1_type 0 225 110 8 877 1125 77 0 7 chr6 38325659 38325803 -111191234 - B1_Mus1 SINE Alu -1 147 5 8 877 615 266 36 7 chr6 38326077 38326266 -111190771 - B4A SINE B4 -87 205 1 8 877 839 111 81 7 chr6 38326402 38326538 -111190499 - B1_Mur4 SINE Alu 0 150 5 8 877 295 284 0 0 chr6 38326633 38326700 -111190337 - tRNA-Ala-GCA tRNA tRNA -8 67 1 8 877 330 45 0 0 chr6 38327193 38327237 -111189800 + (A)n Simple_repeat Simple_repeat 1 44 0 8 877 1003 205 5 16 chr6 38327368 38327561 -111189476 + B3A SINE B2 2 192 -6 8 877 1037 106 13 13 chr6 38327587 38327740 -111189297 + B2_Mm2 SINE B2 1 153 -42 8 877 495 0 0 0 chr6 38327740 38327795 -111189242 + (TA)n Simple_repeat Simple_repeat 1 55 0 8 877 873 188 17 17 chr6 38327795 38327814 -111189223 + B2_Mm1t SINE B2 155 173 -20 8 877 302 349 125 19 chr6 38328511 38328727 -111188310 + MER115 DNA Tip100 345 583 -110 8 877 437 100 54 99 chr6 38328722 38328833 -111188204 - RMER17B LTR ERVK -502 456 351 8 877 236 290 32 11 chr6 38328827 38328921 -111188116 + MER115 DNA Tip100 559 654 -39 8 877 380 250 11 3 chr6 38328921 38329044 -111187993 + L1MB7 LINE L1 5912 6037 -141 8 877 1490 73 5 0 chr6 38329086 38329277 -111187760 - B2_Mm1a SINE B2 0 193 2 8 877 916 212 26 16 chr6 38329277 38329469 -111187568 - B2_Mm2 SINE B2 -1 194 1 8 877 265 238 0 60 chr6 38329931 38329998 -111187039 + MIR3 SINE MIR 145 207 -1 8 877 1247 35 7 0 chr6 38330014 38330159 -111186878 + B1_Mm SINE Alu 1 146 -1 8 877 393 176 0 0 chr6 38330173 38330247 -111186790 + (TA)n Simple_repeat Simple_repeat 2 75 0 8 877 272 161 17 35 chr6 38330340 38330386 -111186651 + RLTR24 LTR ERV1 1 45 -484 8 877 870 155 7 45 chr6 38330386 38330541 -111186496 + B1_Mur3 SINE Alu 1 149 0 8 877 272 161 17 35 chr6 38330541 38330552 -111186485 + RLTR24 LTR ERV1 46 57 -472 8 877 2587 123 60 94 chr6 38330571 38331084 -111185953 + RLTR24 LTR ERV1 34 529 0 8 877 809 236 78 0 chr6 38332382 38332573 -111184464 + B3 SINE B2 2 207 -9 8 877 225 0 0 0 chr6 38332817 38332842 -111184195 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 8 877 1224 70 0 0 chr6 38332842 38332998 -111184039 - B2_Mm2 SINE B2 -38 157 2 8 877 1040 117 14 0 chr6 38333560 38333705 -111183332 - B1_Mus1 SINE Alu -1 147 1 8 877 660 250 25 6 chr6 38333893 38334054 -111182983 - B3A SINE B2 -1 197 34 8 877 240 282 34 68 chr6 38334104 38334222 -111182815 - MTD LTR MaLR -30 389 276 8 877 662 214 57 0 chr6 38334294 38334434 -111182603 - B1_Mur1 SINE Alu -1 148 1 8 877 226 172 52 0 chr6 38334456 38334514 -111182523 + MTE2b LTR MaLR 319 379 0 8 877 1496 48 37 11 chr6 38334594 38334784 -111182253 - B2_Mm2 SINE B2 0 195 1 8 877 1526 207 91 3 chr6 38335740 38336079 -111180958 + RLTR30 LTR ERV1 1 369 -10 8 877 607 130 88 169 chr6 38336246 38336394 -111180643 + B1_Mus1 SINE Alu 1 136 -12 8 877 246 62 0 0 chr6 38336394 38336426 -111180611 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 877 705 112 0 0 chr6 38336821 38336928 -111180109 + B2_Mm2 SINE B2 1 107 -88 8 877 204 40 0 0 chr6 38337012 38337037 -111180000 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 8 877 1113 175 53 0 chr6 38337044 38337233 -111179804 - B3 SINE B2 -13 203 5 8 877 186 118 0 0 chr6 38337243 38337277 -111179760 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 8 877 252 238 45 45 chr6 38337790 38337900 -111179137 - L1M4b LINE L1 -3769 3565 3456 8 877 260 299 26 0 chr6 38337900 38337977 -111179060 - ID4_ SINE ID 0 83 5 8 877 803 145 32 0 chr6 38338361 38338485 -111178552 + B1_Mus2 SINE Alu 5 132 -15 8 877 1220 50 0 0 chr6 38339336 38339496 -111177541 + B2_Mm1a SINE B2 1 160 -33 8 877 255 61 0 0 chr6 38339496 38339529 -111177508 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 8 877 1044 110 0 39 chr6 38339529 38339547 -111177490 + B2_Mm2 SINE B2 159 172 -23 8 877 399 41 0 0 chr6 38339571 38339620 -111177417 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 8 877 753 181 88 0 chr6 38339731 38339902 -111177135 - B3A SINE B2 -10 188 3 8 877 1210 49 0 0 chr6 38340199 38340343 -111176694 + B1_Mus2 SINE Alu 1 144 -3 8 877 252 0 0 0 chr6 38340343 38340371 -111176666 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 8 877 317 316 0 0 chr6 38340407 38340486 -111176551 - ID4_ SINE ID -3 80 2 8 877 473 321 23 0 chr6 38340491 38340622 -111176415 - B1F SINE Alu -9 140 7 8 877 303 244 65 73 chr6 38340960 38341084 -111175953 - L1MEg LINE L1 -5192 892 770 8 877 188 184 0 20 chr6 38341137 38341187 -111175850 + GA-rich Low_complexity Low_complexity 4 52 0 8 877 1221 190 19 0 chr6 38341772 38341977 -111175060 - B3 SINE B2 -7 209 1 8 877 406 178 246 0 chr6 38341977 38342095 -111174942 - B1_Mur2 SINE Alu -1 148 2 8 877 33 43 0 0 chr6 38342193 38342240 -111174797 + AT_rich Low_complexity Low_complexity 1 47 0 8 877 4049 109 26 96 chr6 38342350 38342989 -111174048 - Lx3A LINE L1 -5 6976 6358 8 877 1156 82 0 0 chr6 38342989 38343136 -111173901 - B1_Mm SINE Alu 0 147 1 8 877 4049 109 26 96 chr6 38343136 38343226 -111173811 - Lx3A LINE L1 -624 6357 6298 8 877 23 0 0 0 chr6 38343226 38343249 -111173788 + AT_rich Low_complexity Low_complexity 1 23 0 8 877 226 224 20 0 chr6 38343331 38343380 -111173657 + B3 SINE B2 127 176 -40 8 877 1050 205 62 0 chr6 38343383 38343593 -111173444 + Lx8 LINE L1 6252 6474 -999 8 877 1364 165 100 43 chr6 38343593 38343942 -111173095 - ORR1D1 LTR MaLR 0 374 6 8 877 1190 271 44 6 chr6 38343949 38344290 -111172747 + RMER15-int LTR ERVL 4401 4754 -245 8 877 300 310 24 12 chr6 38344383 38344468 -111172569 + Lx8 LINE L1 7139 7224 -249 8 877 412 319 48 30 chr6 38344459 38344624 -111172413 + Lx8 LINE L1 7153 7320 -153 8 877 489 17 0 0 chr6 38344624 38344682 -111172355 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 877 587 239 7 0 chr6 38345325 38345467 -111171570 - B1_Mur2 SINE Alu -5 144 2 8 877 223 231 0 0 chr6 38345889 38345928 -111171109 - B1_Mur1 SINE Alu -15 134 96 8 877 1275 106 0 31 chr6 38345949 38346143 -111170894 + B2_Mm2 SINE B2 2 189 -6 8 877 844 84 15 0 chr6 38346692 38346823 -111170214 + (GA)n Simple_repeat Simple_repeat 2 134 0 8 877 866 140 8 8 chr6 38346903 38347033 -111170004 - B1_Mur4 SINE Alu -19 131 2 8 877 33 73 0 0 chr6 38347050 38347118 -111169919 + AT_rich Low_complexity Low_complexity 1 68 0 8 877 896 169 14 0 chr6 38347232 38347374 -111169663 - B1_Mur2 SINE Alu -5 144 1 8 877 403 339 16 0 chr6 38347391 38347518 -111169519 - RSINE1 SINE B4 -2 163 35 8 877 240 329 0 24 chr6 38347542 38347626 -111169411 - RSINE1 SINE B4 -2 163 82 8 877 180 77 0 0 chr6 38347670 38347696 -111169341 + (CTGGGG)n Simple_repeat Simple_repeat 5 30 0 8 877 333 306 129 37 chr6 38347883 38348046 -111168991 + B3 SINE B2 38 215 -1 8 877 913 117 51 0 chr6 38348048 38348185 -111168852 + B1_Mur1 SINE Alu 1 144 -5 8 877 220 267 17 0 chr6 38349006 38349066 -111167971 + CT-rich Low_complexity Low_complexity 1 61 0 8 877 655 204 0 40 chr6 38349066 38349214 -111167823 - B1_Mur1 SINE Alu -5 144 3 8 877 425 274 104 52 chr6 38350013 38350167 -111166870 - RSINE1 SINE B4 -3 162 1 8 877 593 264 7 46 chr6 38350262 38350413 -111166624 - RSINE1 SINE B4 0 165 21 8 877 184 288 68 0 chr6 38350473 38350546 -111166491 + L2a LINE L2 3344 3421 -5 8 877 261 0 0 0 chr6 38350577 38350606 -111166431 + (T)n Simple_repeat Simple_repeat 1 29 0 8 877 1207 62 0 0 chr6 38350606 38350752 -111166285 - B1_Mus1 SINE Alu 0 148 3 8 877 885 138 0 0 chr6 38351460 38351605 -111165432 + B1_Mur3 SINE Alu 1 145 -4 8 877 208 244 0 0 chr6 38351607 38351648 -111165389 + GA-rich Low_complexity Low_complexity 1 41 0 8 877 674 228 0 7 chr6 38352084 38352221 -111164816 + B1_Mur1 SINE Alu 1 136 -13 8 877 1159 88 0 0 chr6 38352337 38352484 -111164553 - B1_Mus2 SINE Alu 0 147 1 8 877 520 172 50 0 chr6 38352487 38352586 -111164451 - B1_Mur4 SINE Alu -2 148 45 8 877 214 87 21 21 chr6 38352660 38352707 -111164330 + (TTTTTG)n Simple_repeat Simple_repeat 6 52 0 8 877 263 280 209 34 chr6 38352769 38352917 -111164120 + B4A SINE B4 119 292 0 8 877 1472 45 45 0 chr6 38352942 38353120 -111163917 - B2_Mm2 SINE B2 -6 189 4 8 877 327 25 0 0 chr6 38353224 38353264 -111163773 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 8 877 381 22 0 0 chr6 38353264 38353310 -111163727 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 877 21 57 0 0 chr6 38353746 38353781 -111163256 + AT_rich Low_complexity Low_complexity 1 35 0 9 877 1270 34 0 0 chr6 38353962 38354109 -111162928 - B1_Mus2 SINE Alu 0 147 1 9 877 572 196 195 7 chr6 38354128 38354277 -111162760 - B4 SINE B4 -115 177 1 9 877 294 29 0 0 chr6 38354996 38355031 -111162006 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 877 723 165 53 0 chr6 38355031 38355164 -111161873 - B1_Mus1 SINE Alu -7 141 2 9 877 271 228 9 106 chr6 38355201 38355314 -111161723 - PB1D9 SINE Alu 0 120 19 9 877 562 294 53 24 chr6 38356134 38356343 -111160694 + ID_B1 SINE B4 3 217 -7 9 877 273 75 0 0 chr6 38356344 38356384 -111160653 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 877 1020 199 54 0 chr6 38356445 38356631 -111160406 + B3A SINE B2 2 197 -1 9 877 809 257 29 10 chr6 38356653 38356857 -111160180 + B3 SINE B2 1 208 -8 9 877 551 190 81 74 chr6 38357067 38357215 -111159822 - B1F2 SINE Alu 0 149 1 9 877 1226 27 7 0 chr6 38357250 38357396 -111159641 + B1_Mm SINE Alu 1 147 0 9 877 246 128 0 0 chr6 38357400 38357439 -111159598 + (A)n Simple_repeat Simple_repeat 1 39 0 9 877 366 301 130 55 chr6 38357444 38357697 -111159340 + B4A SINE B4 3 274 -18 9 877 990 152 81 29 chr6 38357805 38358015 -111159022 + Lx2B LINE L1 6775 6995 -5 9 877 424 346 29 0 chr6 38358019 38358155 -111158882 + RSINE1 SINE B4 4 143 -22 9 877 660 256 85 30 chr6 38358253 38358418 -111158619 + B3A SINE B2 8 181 -17 9 877 216 231 0 0 chr6 38358489 38358528 -111158509 - ID_B1 SINE B4 -105 119 81 9 877 718 103 34 8 chr6 38358565 38358682 -111158355 + PB1D9 SINE Alu 1 120 0 9 877 391 179 68 45 chr6 38358708 38358796 -111158241 + B1_Mur2 SINE Alu 8 97 -52 9 877 379 313 48 58 chr6 38358926 38359133 -111157904 - L2a LINE L2 -56 3370 3166 9 877 290 286 53 18 chr6 38359195 38359309 -111157728 - B4 SINE B4 -89 203 86 9 877 627 185 70 49 chr6 38359608 38359750 -111157287 + B1_Mur1 SINE Alu 5 149 0 9 877 198 0 0 0 chr6 38359882 38359904 -111157133 + (A)n Simple_repeat Simple_repeat 1 22 0 9 877 783 176 30 0 chr6 38359904 38360035 -111157002 - B1_Mus1 SINE Alu -13 135 1 9 877 545 105 12 0 chr6 38360092 38360178 -111156859 + (GA)n Simple_repeat Simple_repeat 1 87 0 9 877 360 261 23 70 chr6 38360178 38360306 -111156731 + RSINE1 SINE B4 44 165 0 9 877 369 0 0 0 chr6 38360320 38360361 -111156676 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 877 672 160 16 16 chr6 38360374 38360501 -111156536 - B1_Mur1 SINE Alu -20 129 3 9 877 270 0 0 0 chr6 38360518 38360548 -111156489 + (GAAAA)n Simple_repeat Simple_repeat 3 32 0 9 877 863 119 14 0 chr6 38360548 38360691 -111156346 + (GGGGA)n Simple_repeat Simple_repeat 4 148 0 9 877 1111 61 0 64 chr6 38360977 38361134 -111155903 - B1_Mm SINE Alu 0 147 1 9 877 323 277 48 41 chr6 38361265 38361429 -111155608 + B4A SINE B4 2 172 -120 9 877 417 86 0 0 chr6 38361531 38361589 -111155448 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 877 684 265 40 10 chr6 38361646 38361848 -111155189 + B3 SINE B2 5 212 -4 9 877 261 268 34 23 chr6 38362780 38362868 -111154169 - Lx7 LINE L1 -1962 5734 5646 9 877 1283 270 127 34 chr6 38363013 38363436 -111153601 - L1M2 LINE L1 -704 6298 5798 9 877 1248 69 67 17 chr6 38363436 38363614 -111153423 - B2_Mm2 SINE B2 -7 188 2 9 877 1283 285 153 94 chr6 38363614 38364542 -111152495 - L1M2 LINE L1 -975 5870 4826 9 877 1241 40 0 13 chr6 38364542 38364692 -111152345 + B1_Mus1 SINE Alu 1 148 0 9 877 1283 285 153 94 chr6 38364692 38364846 -111152191 - L1M2 LINE L1 -2020 4825 4714 9 877 189 0 0 0 chr6 38364846 38364867 -111152170 + (TC)n Simple_repeat Simple_repeat 2 22 0 9 877 939 71 0 0 chr6 38364871 38364998 -111152039 - B1_Mus1 SINE Alu -21 127 1 9 877 359 302 73 71 chr6 38365002 38365432 -111151605 - L1M2 LINE L1 -4152 2697 2327 9 877 1206 301 27 35 chr6 38366374 38366890 -111150147 - RMER16-int LTR ERVK -374 5032 4521 9 877 1867 228 95 42 chr6 38367120 38367168 -111149869 - MT2A LTR ERVL 0 533 486 9 877 243 0 0 0 chr6 38367168 38367195 -111149842 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 877 1867 228 95 42 chr6 38367195 38367399 -111149638 - MT2A LTR ERVL -48 485 266 9 877 189 0 0 0 chr6 38367399 38367420 -111149617 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 9 877 1188 44 150 0 chr6 38367421 38367581 -111149456 - B2_Mm2 SINE B2 -11 184 1 9 877 1867 228 95 42 chr6 38367581 38367828 -111149209 - MT2A LTR ERVL -268 265 5 9 877 239 262 0 0 chr6 38367855 38367916 -111149121 - L1M2 LINE L1 -4170 1678 1618 9 877 420 154 12 25 chr6 38368108 38368188 -111148849 - B1_Mur2 SINE Alu 0 149 71 9 877 230 156 0 0 chr6 38368581 38368626 -111148411 + A-rich Low_complexity Low_complexity 1 45 0 9 877 238 216 0 38 chr6 38368644 38368697 -111148340 + ID_B1 SINE B4 128 178 -46 9 877 389 280 21 0 chr6 38368741 38368834 -111148203 + B1_Mur1 SINE Alu 38 132 -17 9 877 374 256 21 62 chr6 38368887 38368911 -111148126 + B3A SINE B2 2 23 -175 9 877 3422 40 2 0 chr6 38368911 38369306 -111147731 - MTA_Mm LTR MaLR 0 396 1 9 877 374 256 21 62 chr6 38369306 38369377 -111147660 + B3A SINE B2 24 93 -105 9 877 1093 235 8 12 chr6 38369377 38369618 -111147419 - Lx6 LINE L1 -191 7269 7030 9 877 641 194 41 14 chr6 38369639 38369774 -111147263 + B1_Mur4 SINE Alu 1 140 -10 9 877 243 0 0 0 chr6 38369774 38369801 -111147236 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 877 472 273 18 0 chr6 38370251 38370361 -111146676 - PB1D7 SINE Alu -8 112 1 9 877 1599 52 0 0 chr6 38370622 38370814 -111146223 - B2_Mm1a SINE B2 0 193 2 9 877 1251 102 28 0 chr6 38370898 38371075 -111145962 + B2_Mm2 SINE B2 1 182 -13 9 877 1464 70 16 0 chr6 38371076 38371261 -111145776 + B2_Mm2 SINE B2 3 190 -5 9 877 485 232 112 0 chr6 38371275 38371400 -111145637 + B3A SINE B2 27 165 -33 9 877 228 200 0 22 chr6 38371419 38371465 -111145572 + B1F1 SINE Alu 13 57 -92 9 877 2845 153 44 79 chr6 38371937 38372350 -111144687 - RMER6D LTR ERVK -124 596 217 9 877 1192 61 0 7 chr6 38372350 38372499 -111144538 - B1_Mus1 SINE Alu 0 148 1 9 877 2845 153 44 79 chr6 38372499 38372703 -111144334 - RMER6D LTR ERVK -504 216 1 9 877 1329 98 22 0 chr6 38374027 38374211 -111142826 + B2_Mm2 SINE B2 2 189 -6 9 877 490 82 186 0 chr6 38374355 38374452 -111142585 + L1Md_F2 LINE L1 6466 6580 -2 9 877 704 236 22 33 chr6 38374589 38374773 -111142264 + B3A SINE B2 1 182 -16 9 877 197 185 0 36 chr6 38374788 38374844 -111142193 + (CATA)n Simple_repeat Simple_repeat 3 56 0 9 877 1177 41 0 14 chr6 38375567 38375715 -111141322 - B1_Mm SINE Alu 0 147 2 9 877 988 112 7 7 chr6 38376148 38376292 -111140745 - B1_Mus1 SINE Alu -3 145 2 9 877 26 0 0 0 chr6 38377610 38377636 -111139401 + AT_rich Low_complexity Low_complexity 1 26 0 9 877 249 217 84 28 chr6 38377669 38377740 -111139297 - B4A SINE B4 -8 284 210 9 877 666 168 30 22 chr6 38377866 38378000 -111139037 - B1_Mus2 SINE Alu -2 145 11 9 877 398 307 18 105 chr6 38378033 38378074 -111138963 + RSINE1 SINE B4 6 40 -125 9 877 1330 148 32 5 chr6 38378074 38378292 -111138745 - URR1B DNA MER1_type 0 225 2 9 877 398 307 18 105 chr6 38378292 38378421 -111138616 + RSINE1 SINE B4 41 161 -4 9 877 522 286 6 36 chr6 38379304 38379471 -111137566 - RSINE1 SINE B4 -2 163 2 9 877 269 288 28 90 chr6 38379493 38379638 -111137399 - MIR SINE MIR -111 151 16 9 877 908 90 52 0 chr6 38379728 38379862 -111137175 - B1_Mus1 SINE Alu -7 141 1 9 877 333 0 0 0 chr6 38380183 38380220 -111136817 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 877 201 139 0 0 chr6 38380428 38380471 -111136566 + (A)n Simple_repeat Simple_repeat 1 43 0 9 877 407 245 94 0 chr6 38380631 38380737 -111136300 + RSINE1 SINE B4 12 127 -38 9 877 1363 63 15 64 chr6 38380914 38381117 -111135920 + B2_Mm1t SINE B2 1 193 0 9 877 623 213 62 8 chr6 38381159 38381287 -111135750 - B1_Mur3 SINE Alu -12 137 3 9 877 701 159 45 8 chr6 38381287 38381419 -111135618 + B1_Mur1 SINE Alu 13 149 0 9 877 214 140 23 23 chr6 38381694 38381738 -111135299 + RSINE1 SINE B4 84 127 -38 9 877 593 184 0 0 chr6 38381837 38381951 -111135086 - B1_Mus1 SINE Alu -1 147 34 9 877 903 57 177 0 chr6 38382181 38382305 -111134732 + B1_Mm SINE Alu 1 146 -1 9 877 192 77 0 0 chr6 38382306 38382332 -111134705 + (A)n Simple_repeat Simple_repeat 1 26 0 9 877 636 137 0 0 chr6 38382554 38382656 -111134381 - B1_Mur2 SINE Alu 0 149 48 9 877 881 41 187 0 chr6 38382692 38382815 -111134222 + B1_Mus2 SINE Alu 2 147 0 9 877 213 39 0 0 chr6 38382815 38382841 -111134196 + (A)n Simple_repeat Simple_repeat 1 26 0 9 877 25 0 0 0 chr6 38383513 38383538 -111133499 + GC_rich Low_complexity Low_complexity 1 25 0 9 877 25 75 0 0 chr6 38384288 38384341 -111132696 + GC_rich Low_complexity Low_complexity 1 53 0 9 877 253 278 0 0 chr6 38384402 38384499 -111132538 + (CCG)n Simple_repeat Simple_repeat 1 97 0 9 877 279 0 0 0 chr6 38385195 38385226 -111131811 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 877 198 0 0 0 chr6 38385362 38385384 -111131653 + (A)n Simple_repeat Simple_repeat 1 22 0 9 877 351 215 100 0 chr6 38386007 38386110 -111130927 + PB1D10 SINE Alu 1 120 0 9 877 206 118 0 0 chr6 38386111 38386145 -111130892 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 877 584 215 0 0 chr6 38386153 38386260 -111130777 + RSINE1 SINE B4 8 114 -51 9 877 207 0 0 0 chr6 38386260 38386283 -111130754 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 877 586 172 148 0 chr6 38386394 38386522 -111130515 - B1_Mus2 SINE Alu 0 147 1 1 877 362 298 49 7 chr6 38387105 38387247 -111129790 - B1F SINE Alu -1 148 1 1 877 390 257 30 122 chr6 38388040 38388171 -111128866 - PB1D7 SINE Alu -4 143 25 1 877 294 283 140 10 chr6 38388282 38388382 -111128655 + PB1D10 SINE Alu 2 114 -3 1 877 283 211 0 165 chr6 38388455 38388540 -111128497 + ID4 SINE ID 2 72 -11 1 877 219 276 69 114 chr6 38388540 38388586 -111128451 + ID_B1 SINE B4 2 126 -98 1 877 23 33 0 0 chr6 38388741 38388771 -111128266 + AT_rich Low_complexity Low_complexity 1 30 0 1 877 515 229 60 22 chr6 38389045 38389179 -111127858 + B1_Mur1 SINE Alu 10 148 -1 1 877 518 197 77 84 chr6 38389285 38389440 -111127597 + B4A SINE B4 71 224 -68 1 877 1124 36 7 0 chr6 38389303 38389442 -111127595 + B1_Mus2 SINE Alu 8 147 0 1 877 212 77 26 0 chr6 38389443 38389482 -111127555 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 877 254 348 10 42 chr6 38389514 38389610 -111127427 + RSINE1 SINE B4 44 136 -29 1 877 196 278 120 22 chr6 38390777 38390869 -111126168 - MIRb SINE MIR -79 189 89 1 877 1093 57 28 0 chr6 38391112 38391253 -111125784 - B1_Mm SINE Alu -1 146 2 1 877 31 26 0 0 chr6 38391271 38391309 -111125728 + AT_rich Low_complexity Low_complexity 1 38 0 1 877 180 263 158 0 chr6 38391600 38391676 -111125361 + MIRc SINE MIR 126 213 -55 1 877 386 278 29 73 chr6 38391796 38391932 -111125105 + B1F2 SINE Alu 8 137 -12 1 877 569 329 35 7 chr6 38392058 38392199 -111124838 + RSINE1 SINE B4 4 148 -17 1 877 202 55 0 53 chr6 38392245 38392283 -111124754 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 1 877 390 206 143 10 chr6 38392283 38392374 -111124663 - PB1D9 SINE Alu -13 107 3 1 877 1193 35 0 0 chr6 38392509 38392650 -111124387 - B1_Mus2 SINE Alu -6 141 1 1 877 377 170 65 65 chr6 38392862 38392969 -111124068 + B1_Mur2 SINE Alu 43 149 0 1 877 21 0 0 0 chr6 38392976 38392997 -111124040 + AT_rich Low_complexity Low_complexity 1 21 0 1 877 968 281 72 42 chr6 38393009 38393340 -111123697 + MER2 DNA MER2_type 5 345 0 1 877 1358 70 11 11 chr6 38394189 38394377 -111122660 + B2_Mm2 SINE B2 1 188 -7 1 877 243 0 0 0 chr6 38394383 38394410 -111122627 + (GAAA)n Simple_repeat Simple_repeat 4 30 0 1 877 456 260 40 10 chr6 38394690 38394791 -111122246 + B1F1 SINE Alu 1 104 -45 1 877 497 214 8 74 chr6 38394791 38394912 -111122125 - B3 SINE B2 -100 116 4 1 877 455 275 86 20 chr6 38394951 38395103 -111121934 - RSINE1 SINE B4 -1 164 3 1 877 476 277 108 16 chr6 38396239 38396555 -111120482 - L1ME1 LINE L1 -16 6163 5819 1 877 22 0 0 0 chr6 38396611 38396633 -111120404 + AT_rich Low_complexity Low_complexity 1 22 0 1 877 443 282 47 24 chr6 38396652 38396779 -111120258 - RSINE1 SINE B4 -34 131 2 1 877 707 164 22 29 chr6 38396882 38397020 -111120017 - B1_Mur3 SINE Alu -9 140 4 1 877 249 31 0 0 chr6 38397049 38397071 -111119966 + (A)n Simple_repeat Simple_repeat 1 22 0 1 877 1066 97 14 0 chr6 38397071 38397216 -111119821 + B1_Mm SINE Alu 1 147 0 1 877 249 31 0 0 chr6 38397216 38397225 -111119812 + (A)n Simple_repeat Simple_repeat 1 9 0 1 877 570 267 50 8 chr6 38397225 38397346 -111119691 + RSINE1 SINE B4 28 153 -12 1 877 802 148 41 21 chr6 38397609 38397754 -111119283 - B1_Mur3 SINE Alu -1 148 1 1 877 270 95 0 0 chr6 38397754 38397796 -111119241 + (TATG)n Simple_repeat Simple_repeat 1 42 0 1 877 274 260 111 37 chr6 38397803 38397911 -111119126 - PB1D10 SINE Alu -1 116 1 1 877 370 297 128 21 chr6 38398012 38398153 -111118884 - RSINE1 SINE B4 -5 160 5 1 877 1980 148 97 8 chr6 38398289 38398651 -111118386 - ORR1B1 LTR MaLR 0 394 1 1 877 958 235 14 23 chr6 38399132 38399350 -111117687 + B3 SINE B2 1 216 0 1 877 454 325 27 93 chr6 38399402 38399585 -111117452 - ID_B1 SINE B4 -46 178 8 1 877 25 0 0 0 chr6 38399639 38399664 -111117373 + AT_rich Low_complexity Low_complexity 1 25 0 1 877 456 19 0 0 chr6 38399664 38399717 -111117320 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 877 609 128 32 0 chr6 38399768 38399862 -111117175 - B1_Mur4 SINE Alu -2 148 52 1 877 1060 80 14 0 chr6 38400045 38400183 -111116854 - B1_Mus1 SINE Alu -8 140 1 1 877 1164 55 0 7 chr6 38400513 38400661 -111116376 + B1_Mus2 SINE Alu 1 147 0 1 877 1359 83 5 35 chr6 38400851 38401051 -111115986 + B2_Mm2 SINE B2 1 194 -1 1 877 347 279 89 63 chr6 38401151 38401342 -111115695 - L1MC3 LINE L1 -6 7876 7681 1 877 661 217 127 30 chr6 38401426 38401565 -111115472 + B3A SINE B2 1 159 -39 1 877 387 0 0 0 chr6 38401565 38401608 -111115429 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 877 661 217 127 30 chr6 38401608 38401634 -111115403 + B3A SINE B2 160 182 -16 1 877 225 211 0 0 chr6 38401650 38401702 -111115335 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 877 694 222 136 28 chr6 38401769 38401945 -111115092 + B3 SINE B2 8 202 -14 1 877 26 30 0 0 chr6 38401950 38401983 -111115054 + AT_rich Low_complexity Low_complexity 1 33 0 1 877 271 196 70 18 chr6 38402002 38402059 -111114978 - RSINE1 SINE B4 -19 146 87 1 877 736 191 81 0 chr6 38402100 38402236 -111114801 - B1_Mur2 SINE Alu -1 148 2 1 877 1398 59 38 5 chr6 38402332 38402518 -111114519 - B2_Mm2 SINE B2 -3 192 1 1 877 405 287 123 9 chr6 38402534 38402745 -111114292 - L1MC3 LINE L1 -422 7363 7129 1 877 816 303 93 10 chr6 38403159 38403469 -111113568 - MER58B DNA MER1_type 0 341 6 1 877 301 297 68 19 chr6 38403652 38403755 -111113282 + ID_B1 SINE B4 104 211 -13 1 109 617 232 118 6 chr6 38403935 38404104 -111112933 - B3A SINE B2 -9 189 2 1 878 738 213 208 61 chr6 38404235 38404405 -111112632 + B4A SINE B4 4 204 -88 1 878 1717 16 0 0 chr6 38404405 38404597 -111112440 + B2_Mm1a SINE B2 2 193 0 1 878 738 213 208 61 chr6 38404597 38404671 -111112366 + B4A SINE B4 205 283 -9 1 878 225 0 0 0 chr6 38406178 38406203 -111110834 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 878 703 159 77 31 chr6 38406203 38406333 -111110704 - B1_Mur3 SINE Alu -13 136 1 1 878 360 222 161 0 chr6 38406347 38406428 -111110609 - B1F2 SINE Alu -4 145 52 1 878 866 239 58 95 chr6 38406444 38406510 -111110527 - L1MC1 LINE L1 -22 6311 6248 1 878 387 0 0 0 chr6 38406510 38406553 -111110484 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 878 866 239 58 95 chr6 38406553 38406594 -111110443 - L1MC1 LINE L1 -86 6247 6231 1 878 252 0 0 0 chr6 38406594 38406622 -111110415 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 878 866 239 58 95 chr6 38406622 38406860 -111110177 - L1MC1 LINE L1 -103 6230 5978 1 878 732 158 31 0 chr6 38406886 38407013 -111110024 - B1_Mus1 SINE Alu -17 131 1 1 878 209 57 0 28 chr6 38407026 38407062 -111109975 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 878 1110 83 7 0 chr6 38407062 38407206 -111109831 - B1_Mus1 SINE Alu -2 146 2 1 878 771 243 64 5 chr6 38407305 38407508 -111109529 - B3 SINE B2 0 216 2 1 878 807 127 111 35 chr6 38407745 38407917 -111109120 - B2_Mm2 SINE B2 -9 186 2 1 878 250 229 99 14 chr6 38408470 38408541 -111108496 + MIRc SINE MIR 127 203 -65 1 878 1146 95 0 0 chr6 38408818 38408965 -111108072 + B1_Mm SINE Alu 1 147 0 1 878 914 100 0 7 chr6 38409017 38409158 -111107879 + (TCCC)n Simple_repeat Simple_repeat 2 141 0 1 878 306 0 0 0 chr6 38409158 38409191 -111107846 + (TTTC)n Simple_repeat Simple_repeat 4 37 0 1 878 557 191 95 9 chr6 38409194 38409310 -111107727 - B1_Mur4 SINE Alu -11 139 14 1 878 319 240 100 69 chr6 38409310 38409324 -111107713 - ID_B1 SINE B4 -11 213 80 1 878 192 40 0 0 chr6 38409411 38409436 -111107601 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 878 580 197 103 0 chr6 38409438 38409555 -111107482 - B1_Mur3 SINE Alu -19 130 2 1 878 1009 228 0 36 chr6 38409583 38409802 -111107235 - B3 SINE B2 -5 211 1 1 878 276 30 0 0 chr6 38410301 38410334 -111106703 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 878 39 38 0 0 chr6 38410632 38410685 -111106352 + AT_rich Low_complexity Low_complexity 1 53 0 1 878 875 264 63 46 chr6 38410827 38410980 -111106057 - L1MA8 LINE L1 -299 5992 5825 1 878 520 196 6 164 chr6 38410980 38411157 -111105880 - B1_Mur1 SINE Alu 0 149 1 1 878 875 264 63 46 chr6 38411157 38411369 -111105668 - L1MA8 LINE L1 -467 5824 5621 1 878 323 344 38 6 chr6 38411805 38411963 -111105074 - RSINE1 SINE B4 0 165 3 1 878 669 219 44 0 chr6 38411973 38412087 -111104950 - B1_Mur2 SINE Alu -29 120 2 1 878 229 329 77 26 chr6 38412206 38412284 -111104753 + ID4 SINE ID 2 83 0 1 878 418 255 10 10 chr6 38412306 38412405 -111104632 + PB1D9 SINE Alu 22 120 0 1 878 229 327 0 0 chr6 38413276 38413331 -111103706 + PB1D10 SINE Alu 3 57 -60 1 878 22 0 0 0 chr6 38414232 38414254 -111102783 + AT_rich Low_complexity Low_complexity 1 22 0 1 878 441 279 14 0 chr6 38414291 38414438 -111102599 - L1_Mur3 LINE L1 -1775 4105 3957 1 878 217 211 68 34 chr6 38414438 38414497 -111102540 - B1F2 SINE Alu -86 63 3 1 878 1291 276 182 34 chr6 38414502 38414800 -111102237 - L1_Mur3 LINE L1 -3075 2805 2495 1 878 426 88 0 0 chr6 38414800 38414868 -111102169 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 878 1291 276 182 34 chr6 38414868 38415677 -111101360 - L1_Mur3 LINE L1 -3386 2494 1534 1 878 827 199 28 0 chr6 38415684 38415825 -111101212 + B1_Mur2 SINE Alu 5 149 0 1 878 1531 38 22 0 chr6 38415975 38416160 -111100877 - B2_Mm2 SINE B2 -6 189 1 1 878 229 185 279 58 chr6 38416256 38416342 -111100695 - B1_Mus1 SINE Alu -43 105 1 1 878 856 205 74 32 chr6 38416346 38416563 -111100474 - ORR1D1 LTR MaLR -7 367 142 1 878 306 239 1 115 chr6 38416707 38416811 -111100226 - ID4_ SINE ID -47 105 13 1 878 309 118 0 0 chr6 38416832 38416883 -111100154 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 1 878 1214 55 0 0 chr6 38417157 38417303 -111099734 + B1_Mus1 SINE Alu 3 148 0 1 878 414 57 0 0 chr6 38417865 38417918 -111099119 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 878 1195 95 25 60 chr6 38418285 38418486 -111098551 - B2_Mm2 SINE B2 0 195 2 1 878 214 368 41 31 chr6 38418796 38418894 -111098143 + ID_B1 SINE B4 2 100 -124 1 878 317 301 79 24 chr6 38419078 38419178 -111097859 + B1F SINE Alu 5 107 -42 1 878 261 83 0 0 chr6 38419178 38419214 -111097823 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 878 317 301 79 24 chr6 38419214 38419239 -111097798 + B1F SINE Alu 108 137 -12 1 878 315 0 0 0 chr6 38419256 38419291 -111097746 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 878 834 187 16 21 chr6 38419718 38419904 -111097133 - B2_Mm2 SINE B2 -8 187 3 1 878 210 71 0 0 chr6 38420063 38420091 -111096946 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 878 708 217 190 0 chr6 38420356 38420540 -111096497 + ID_B1 SINE B4 4 222 -2 1 878 347 295 41 21 chr6 38420558 38420650 -111096387 + B1F SINE Alu 2 95 -54 1 878 452 335 59 7 chr6 38420650 38420803 -111096234 + RSINE1 SINE B4 3 163 -2 1 878 411 340 0 9 chr6 38420835 38420942 -111096095 + ID_B1 SINE B4 2 107 -117 1 878 714 269 75 15 chr6 38421459 38421478 -111095559 - B3 SINE B2 -4 212 194 1 878 1258 206 18 111 chr6 38421478 38421930 -111095107 - RMER17C LTR ERVK 0 410 1 1 878 714 269 75 15 chr6 38421930 38422110 -111094927 - B3 SINE B2 -23 193 1 1 878 207 0 0 0 chr6 38422878 38422901 -111094136 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 878 481 241 133 9 chr6 38422901 38423008 -111094029 - B1_Mur4 SINE Alu -26 124 3 1 878 486 245 72 0 chr6 38423149 38423288 -111093749 - B1_Mur1 SINE Alu 0 149 1 1 878 189 0 0 0 chr6 38423322 38423343 -111093694 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 878 364 238 212 15 chr6 38423480 38423612 -111093425 - RLTR24 LTR ERV1 0 529 372 1 878 278 297 14 0 chr6 38423791 38423865 -111093172 - RLTR24 LTR ERV1 -454 75 1 1 878 739 104 0 0 chr6 38424014 38424120 -111092917 + B2_Mm2 SINE B2 2 107 -88 1 878 320 290 0 8 chr6 38424187 38424312 -111092725 + GA-rich Low_complexity Low_complexity 3 126 0 1 878 1281 215 112 171 chr6 38424533 38425065 -111091972 - RLTR19-int LTR ERVK -1757 4380 3898 1 878 883 157 14 0 chr6 38425065 38425212 -111091825 - B1_Mur4 SINE Alu 0 150 2 1 878 1281 215 112 171 chr6 38425212 38425661 -111091376 - RLTR19-int LTR ERVK -2240 3897 3457 1 878 27 49 0 0 chr6 38425684 38425725 -111091312 + AT_rich Low_complexity Low_complexity 1 41 0 1 878 932 171 0 0 chr6 38425981 38426127 -111090910 - B1_Mus2 SINE Alu -1 146 1 1 878 620 272 62 47 chr6 38426151 38426536 -111090501 - RLTR19-int LTR ERVK -3389 2748 2436 1 878 1309 86 27 5 chr6 38426848 38427035 -111090002 + B2_Mm1t SINE B2 2 192 -1 1 878 1435 305 7 62 chr6 38427215 38427656 -111089381 - MTC-int LTR MaLR -268 990 469 1 878 262 152 0 0 chr6 38427660 38427706 -111089331 - RLTR19-int LTR ERVK -4970 1167 1122 1 878 401 141 24 49 chr6 38427710 38427792 -111089245 - RLTR14-int LTR ERV1 -3935 1382 1303 1 878 329 276 71 109 chr6 38428202 38428385 -111088652 - RLTR24 LTR ERV1 -80 449 274 1 878 274 307 0 0 chr6 38428439 38428514 -111088523 - RLTR24 LTR ERV1 -454 75 1 1 878 224 233 0 0 chr6 38428761 38428804 -111088233 + T-rich Low_complexity Low_complexity 4 46 0 1 878 315 0 0 0 chr6 38428806 38428841 -111088196 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 1 878 704 192 69 0 chr6 38428841 38428971 -111088066 - B1_Mus1 SINE Alu -9 139 1 1 878 205 159 45 0 chr6 38429012 38429056 -111087981 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 1 878 560 185 135 23 chr6 38429531 38429664 -111087373 - B1_Mur1 SINE Alu 0 149 2 1 878 531 313 37 6 chr6 38429803 38429967 -111087070 - B3 SINE B2 -2 214 46 1 878 407 281 164 15 chr6 38429982 38430177 -111086860 - ID_B1 SINE B4 0 224 1 1 878 379 244 2 27 chr6 38430233 38430340 -111086697 + B1_Mur2 SINE Alu 20 149 0 1 878 298 295 22 33 chr6 38430905 38430996 -111086041 + BC1_Mm scRNA scRNA 1 90 -62 1 878 1159 56 0 0 chr6 38431494 38431638 -111085399 - B1_Mus1 SINE Alu 0 148 5 1 878 285 324 39 0 chr6 38432125 38432227 -111084810 + PB1D10 SINE Alu 1 106 -11 1 878 357 24 0 0 chr6 38433552 38433594 -111083443 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 878 387 0 0 0 chr6 38433594 38433637 -111083400 + (TAG)n Simple_repeat Simple_repeat 3 45 0 1 878 394 278 135 0 chr6 38433830 38433956 -111083081 + B1F1 SINE Alu 1 143 -6 1 878 658 128 0 0 chr6 38434193 38434287 -111082750 + B2_Mm2 SINE B2 1 94 -101 1 878 279 253 143 12 chr6 38434289 38434373 -111082664 + B1_Mur3 SINE Alu 42 136 -13 1 878 227 180 191 32 chr6 38434341 38434404 -111082633 - MT2B LTR ERVL -362 239 167 1 878 747 230 0 0 chr6 38434458 38434606 -111082431 - B1_Mus1 SINE Alu 0 148 1 1 878 206 283 0 0 chr6 38434748 38434794 -111082243 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 878 262 127 55 0 chr6 38434795 38434850 -111082187 + B2_Mm2 SINE B2 137 194 -1 1 878 524 351 52 0 chr6 38435156 38435310 -111081727 + RSINE1 SINE B4 4 165 0 1 878 246 283 0 0 chr6 38435348 38435408 -111081629 - ID4_ SINE ID -19 64 5 1 878 223 346 37 0 chr6 38435494 38435575 -111081462 + ID SINE ID 5 88 -136 1 878 401 286 57 25 chr6 38435769 38435891 -111081146 - PB1 SINE Alu 0 127 2 1 878 222 128 0 0 chr6 38435956 38435995 -111081042 + (TATG)n Simple_repeat Simple_repeat 4 42 0 1 878 235 318 12 0 chr6 38436004 38436021 -111081016 + polypurine Low_complexity Low_complexity 4 20 0 1 878 973 112 35 0 chr6 38436021 38436164 -111080873 + B1_Mus1 SINE Alu 1 148 0 1 878 235 318 12 0 chr6 38436164 38436231 -111080806 + GA-rich Low_complexity Low_complexity 21 88 0 1 878 481 255 0 29 chr6 38436362 38436467 -111080570 - B1F2 SINE Alu -1 148 47 1 878 264 30 0 0 chr6 38436516 38436549 -111080488 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 878 1089 66 0 0 chr6 38436549 38436686 -111080351 - B1_Mm SINE Alu -9 138 2 1 878 29 28 0 0 chr6 38436687 38436723 -111080314 + AT_rich Low_complexity Low_complexity 1 36 0 1 878 905 177 0 0 chr6 38437388 38437529 -111079508 + B1_Mur3 SINE Alu 3 143 -6 1 878 1144 65 135 0 chr6 38437768 38437938 -111079099 + B2_Mm2 SINE B2 1 193 -2 1 878 215 342 53 0 chr6 38438201 38438277 -111078760 + ID4_ SINE ID 3 82 -1 1 878 218 155 0 65 chr6 38438282 38438344 -111078693 + A-rich Low_complexity Low_complexity 3 60 0 1 878 427 266 32 89 chr6 38438476 38438487 -111078550 + ID_B1 SINE B4 77 114 -110 1 878 540 248 34 17 chr6 38438487 38438606 -111078431 + B1F2 SINE Alu 3 123 -26 1 878 427 266 32 89 chr6 38438606 38438633 -111078404 + ID_B1 SINE B4 115 224 0 1 878 716 244 94 6 chr6 38438768 38438949 -111078088 + ID_B1 SINE B4 16 212 -12 1 878 646 269 20 7 chr6 38440121 38440267 -111076770 + B1_Mur3 SINE Alu 2 149 0 1 878 22 88 0 0 chr6 38440312 38440369 -111076668 + AT_rich Low_complexity Low_complexity 1 57 0 1 878 481 276 44 50 chr6 38442134 38442294 -111074743 + ID_B1 SINE B4 66 224 0 1 878 556 307 0 0 chr6 38442450 38442577 -111074460 + ID_B1 SINE B4 82 208 -16 1 878 799 210 44 33 chr6 38442688 38442870 -111074167 - B3A SINE B2 -4 194 11 1 878 758 210 14 7 chr6 38443370 38443509 -111073528 + RSINE1 SINE B4 5 144 -21 1 878 26 50 0 0 chr6 38443524 38443564 -111073473 + AT_rich Low_complexity Low_complexity 1 40 0 1 878 368 283 2 17 chr6 38443696 38443814 -111073223 - PB1D7 SINE Alu 0 120 4 1 878 593 202 39 0 chr6 38444127 38444256 -111072781 + B2_Mm2 SINE B2 35 168 -27 1 878 428 167 22 0 chr6 38444259 38444349 -111072688 + GA-rich Low_complexity Low_complexity 1 92 0 1 878 294 224 90 0 chr6 38444667 38444734 -111072303 + PB1 SINE Alu 47 119 -8 1 878 303 231 176 0 chr6 38445072 38445180 -111071857 + B1F1 SINE Alu 1 127 -22 1 878 223 203 116 0 chr6 38446100 38446169 -111070868 - L2b LINE L2 -6 3369 3293 1 878 666 167 9 9 chr6 38447813 38447928 -111069109 - B1_Mur1 SINE Alu -32 117 3 1 878 445 188 187 9 chr6 38449512 38449672 -111067365 - B3 SINE B2 -19 176 2 1 878 648 204 168 6 chr6 38449921 38450094 -111066943 + B3 SINE B2 16 216 0 1 878 430 201 29 18 chr6 38450740 38450845 -111066192 - B1_Mur1 SINE Alu -8 141 1 1 878 349 330 76 43 chr6 38450848 38451032 -111066005 - MER58A DNA MER1_type -34 190 1 1 878 661 70 8 65 chr6 38451593 38451716 -111065321 + B1_Mus1 SINE Alu 33 148 0 1 878 279 0 0 0 chr6 38451796 38451827 -111065210 + (T)n Simple_repeat Simple_repeat 1 31 0 1 878 306 125 0 0 chr6 38452581 38452629 -111064408 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 1 878 480 260 36 58 chr6 38454087 38454226 -111062811 + B1F SINE Alu 1 136 -13 1 878 192 152 0 0 chr6 38454482 38454515 -111062522 + T-rich Low_complexity Low_complexity 1 33 0 1 878 228 200 0 0 chr6 38454725 38454775 -111062262 + A-rich Low_complexity Low_complexity 1 50 0 1 878 387 0 0 0 chr6 38457405 38457448 -111059589 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 878 293 208 26 13 chr6 38458164 38458242 -111058795 + MIR SINE MIR 93 171 -91 1 878 180 0 0 0 chr6 38460670 38460690 -111056347 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 878 31 58 0 0 chr6 38461981 38462033 -111055004 + AT_rich Low_complexity Low_complexity 1 52 0 1 878 378 94 0 0 chr6 38462047 38462111 -111054926 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 878 435 262 78 72 chr6 38463273 38463466 -111053571 - B3A SINE B2 0 198 5 1 878 631 269 39 0 chr6 38463517 38463673 -111053364 + RSINE1 SINE B4 3 164 -1 1 878 383 299 37 0 chr6 38463791 38463898 -111053139 - PB1D10 SINE Alu -5 112 2 1 878 270 0 0 0 chr6 38463903 38463933 -111053104 + (T)n Simple_repeat Simple_repeat 1 30 0 1 878 1164 48 0 26 chr6 38463933 38464084 -111052953 - B1_Mus2 SINE Alu 0 147 1 1 878 331 224 11 55 chr6 38464248 38464362 -111052675 + B1_Mur1 SINE Alu 40 143 -6 1 878 260 253 152 0 chr6 38464654 38464733 -111052304 + ID_B1 SINE B4 119 209 -15 1 878 189 284 73 15 chr6 38464935 38465003 -111052034 + MIRb SINE MIR 8 79 -189 1 878 287 250 41 14 chr6 38466031 38466104 -111050933 + PB1D9 SINE Alu 37 111 -9 1 878 817 239 75 0 chr6 38466504 38466692 -111050345 + B3 SINE B2 1 202 -14 1 878 427 196 76 29 chr6 38466748 38466853 -111050184 + B1_Mus2 SINE Alu 13 122 -25 1 878 402 21 0 0 chr6 38466868 38466915 -111050122 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 878 783 199 93 10 chr6 38466941 38467134 -111049903 + B3 SINE B2 1 209 -7 1 878 1243 188 107 85 chr6 38467145 38467511 -111049526 - ORR1D1 LTR MaLR 0 374 1 1 878 261 356 20 0 chr6 38467743 38467844 -111049193 + PB1D10 SINE Alu 1 103 -14 1 878 887 250 5 14 chr6 38467922 38468133 -111048904 + B3 SINE B2 1 209 -7 1 878 266 256 33 55 chr6 38468546 38468637 -111048400 - PB1D10 SINE Alu -24 93 5 1 878 326 179 86 43 chr6 38468687 38468757 -111048280 - tRNA-Ala-GCA tRNA tRNA 0 75 3 1 878 412 228 79 0 chr6 38469043 38469144 -111047893 - PB1D10 SINE Alu -6 111 3 1 878 1235 20 7 20 chr6 38469183 38469332 -111047705 + B1_Mm SINE Alu 1 147 0 1 878 180 0 0 0 chr6 38469332 38469352 -111047685 + (A)n Simple_repeat Simple_repeat 1 20 0 1 878 565 83 36 18 chr6 38469657 38469768 -111047269 + (TATG)n Simple_repeat Simple_repeat 2 114 0 1 878 231 230 327 0 chr6 38469774 38469887 -111047150 - B3A SINE B2 -48 150 1 1 878 1272 27 0 0 chr6 38469956 38470104 -111046933 - B1_Mus1 SINE Alu 0 148 1 1 878 22 70 0 0 chr6 38470123 38470166 -111046871 + AT_rich Low_complexity Low_complexity 1 43 0 1 878 590 282 26 65 chr6 38470539 38470770 -111046267 - ID_B1 SINE B4 0 224 3 1 878 1021 176 11 5 chr6 38471150 38471338 -111045699 - B3 SINE B2 -26 190 2 1 878 760 163 93 0 chr6 38471359 38471488 -111045549 - B1_Mur2 SINE Alu -8 141 1 1 878 247 354 24 0 chr6 38471507 38471589 -111045448 - L1MEd LINE L1 -5495 624 541 1 878 495 188 99 0 chr6 38473759 38473860 -111043177 + B1F1 SINE Alu 1 111 -38 1 878 326 271 82 28 chr6 38474536 38474718 -111042319 + Charlie7 DNA MER1_type 1692 1883 -729 1 878 543 81 0 0 chr6 38475072 38475158 -111041879 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 878 240 235 20 0 chr6 38475161 38475212 -111041825 - B3A SINE B2 -38 160 109 1 878 1176 199 82 7 chr6 38475552 38475821 -111041216 + Lx9 LINE L1 7153 7441 -203 1 878 397 171 139 28 chr6 38475858 38475966 -111041071 + B1_Mur4 SINE Alu 30 149 -1 1 878 360 165 110 0 chr6 38475968 38476059 -111040978 + Lx9 LINE L1 7538 7638 -6 1 878 200 250 74 62 chr6 38476278 38476359 -111040678 + MIRm SINE MIR 195 276 0 1 878 614 199 346 3 chr6 38476505 38476810 -111040227 + MTC LTR MaLR 1 410 -9 1 878 403 243 58 0 chr6 38476983 38477086 -111039951 + PB1D7 SINE Alu 12 120 0 1 878 1081 118 27 0 chr6 38477099 38477263 -111039774 + B2_Mm2 SINE B2 2 169 -26 1 878 2457 86 82 11 chr6 38477263 38477628 -111039409 + Lx LINE L1 6264 6654 0 1 878 1081 118 27 0 chr6 38477628 38477650 -111039387 + B2_Mm2 SINE B2 170 191 -4 1 878 357 267 8 8 chr6 38477701 38477818 -111039219 + PB1D10 SINE Alu 1 117 0 1 878 283 233 100 108 chr6 38477822 38477867 -111039170 + B3A SINE B2 15 52 -146 1 878 414 0 0 0 chr6 38477867 38477913 -111039124 + (TGG)n Simple_repeat Simple_repeat 2 47 0 1 878 283 233 100 108 chr6 38477913 38477997 -111039040 + B3A SINE B2 53 143 -55 1 878 186 43 0 0 chr6 38478092 38478115 -111038922 + (T)n Simple_repeat Simple_repeat 1 23 0 1 878 1174 74 0 0 chr6 38478115 38478263 -111038774 - B1_Mus1 SINE Alu 0 148 1 1 878 1449 73 5 16 chr6 38478264 38478458 -111038579 - B2_Mm1a SINE B2 0 193 2 1 878 381 261 156 47 chr6 38478495 38478752 -111038285 + B4A SINE B4 4 288 -4 1 878 1216 41 0 13 chr6 38478813 38478962 -111038075 + B1_Mus2 SINE Alu 1 147 0 1 878 225 0 0 0 chr6 38478962 38478987 -111038050 + (A)n Simple_repeat Simple_repeat 1 25 0 1 878 2967 134 39 59 chr6 38478987 38479559 -111037478 + RMER19B LTR ERVK 343 902 0 1 878 359 228 164 17 chr6 38479696 38479812 -111037225 + RMER1B Other Other 581 713 -353 1 878 257 89 22 0 chr6 38480097 38480142 -111036895 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 1 878 240 229 32 16 chr6 38480460 38480522 -111036515 + G-rich Low_complexity Low_complexity 5 67 0 1 878 595 204 26 9 chr6 38480734 38480848 -111036189 - PB1D7 SINE Alu -1 119 4 1 878 1277 91 39 17 chr6 38480869 38481047 -111035990 - B2_Mm2 SINE B2 -9 186 5 1 878 1036 82 0 0 chr6 38481073 38481220 -111035817 - MTB_Mm LTR MaLR -260 147 1 1 878 777 160 115 29 chr6 38481260 38481434 -111035603 + B2_Mm2 SINE B2 2 190 -5 1 878 436 325 18 24 chr6 38482411 38482578 -111034459 + G-rich Low_complexity Low_complexity 3 168 0 1 878 523 97 311 0 chr6 38483177 38483280 -111033757 + B1_Mur4 SINE Alu 5 139 -11 1 878 630 28 0 0 chr6 38483930 38484002 -111033035 + tRNA-Arg-AGG tRNA tRNA 1 72 -4 1 878 415 233 96 15 chr6 38484075 38484210 -111032827 - B1_Mm SINE Alu 0 147 2 1 878 193 69 103 0 chr6 38484251 38484281 -111032756 + A-rich Low_complexity Low_complexity 3 35 0 1 878 1045 43 50 14 chr6 38484281 38484421 -111032616 + B1_Mus2 SINE Alu 1 145 -2 1 878 193 69 103 0 chr6 38484421 38484448 -111032589 + A-rich Low_complexity Low_complexity 36 65 0 1 878 243 61 0 0 chr6 38485435 38485468 -111031569 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 878 529 235 50 0 chr6 38485523 38485642 -111031395 - B1_Mur1 SINE Alu -12 137 13 1 878 797 167 0 27 chr6 38486179 38486327 -111030710 + B1_Mus1 SINE Alu 4 147 -1 1 878 462 210 20 10 chr6 38486716 38486817 -111030220 + B1_Mus1 SINE Alu 34 135 -13 1 878 216 0 0 0 chr6 38486819 38486843 -111030194 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 878 229 312 13 0 chr6 38486906 38486983 -111030054 + MT2B LTR ERVL 164 241 -360 1 878 220 194 171 43 chr6 38486940 38487010 -111030027 + PB1D9 SINE Alu 42 120 0 1 878 245 302 0 0 chr6 38487077 38487140 -111029897 + BC1_Mm scRNA scRNA 28 90 -62 1 878 23 0 0 0 chr6 38487295 38487318 -111029719 + AT_rich Low_complexity Low_complexity 1 23 0 1 878 467 248 69 49 chr6 38487321 38487465 -111029572 - RSINE1 SINE B4 -6 159 13 1 878 231 174 22 0 chr6 38487502 38487548 -111029489 + B1F SINE Alu 93 139 -10 1 878 328 293 19 48 chr6 38487591 38487695 -111029342 + PB1D10 SINE Alu 9 109 -8 1 878 229 195 0 0 chr6 38488070 38488111 -111028926 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 1 878 1202 48 7 0 chr6 38488170 38488316 -111028721 - B1_Mm SINE Alu 0 147 1 1 878 2431 63 9 0 chr6 38489502 38489836 -111027201 - ORR1A1 LTR MaLR 0 346 10 1 878 782 265 81 23 chr6 38489933 38490192 -111026845 - B4A SINE B4 -18 274 1 1 878 658 217 67 67 chr6 38490250 38490443 -111026594 + B3A SINE B2 6 198 0 1 878 744 182 36 7 chr6 38490468 38490606 -111026431 - B1_Mur1 SINE Alu 0 149 8 1 878 285 100 0 0 chr6 38490617 38490667 -111026370 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 1 878 1148 51 0 0 chr6 38490667 38490804 -111026233 - B1_Mus2 SINE Alu -9 138 2 1 878 1302 40 6 6 chr6 38490981 38491157 -111025880 + MTB LTR MaLR 225 400 0 1 878 294 191 29 29 chr6 38491251 38491321 -111025716 - RSINE1 SINE B4 -31 134 65 1 878 1064 109 0 7 chr6 38491849 38491996 -111025041 - B1_Mus1 SINE Alu 0 148 3 1 878 23 54 0 0 chr6 38492008 38492045 -111024992 + AT_rich Low_complexity Low_complexity 1 37 0 1 878 1600 26 20 30 chr6 38492427 38492624 -111024413 - B2_Mm2 SINE B2 0 195 1 1 878 1465 63 16 5 chr6 38493367 38493397 -111023640 - B2_Mm1a SINE B2 0 193 161 1 878 300 53 0 0 chr6 38493397 38493435 -111023602 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 878 1465 63 16 5 chr6 38493435 38493594 -111023443 - B2_Mm1a SINE B2 -33 160 2 1 878 1433 81 0 0 chr6 38493910 38494095 -111022942 - B2_Mm1a SINE B2 -8 185 1 1 878 1634 26 5 15 chr6 38494118 38494313 -111022724 - B2_Mm1t SINE B2 0 193 1 1 878 1296 73 77 22 chr6 38496232 38496249 -111020788 - B2_Mm1t SINE B2 -1 192 176 1 878 207 0 0 0 chr6 38496249 38496272 -111020765 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 878 1296 73 77 22 chr6 38496272 38496436 -111020601 - B2_Mm1t SINE B2 -18 175 2 1 878 1291 20 0 0 chr6 38496461 38496608 -111020429 - B1_Mus2 SINE Alu 0 147 1 1 878 1203 105 27 11 chr6 38496640 38496823 -111020214 + B2_Mm2 SINE B2 2 187 -8 1 878 1479 58 5 16 chr6 38496991 38497184 -111019853 - B2_Mm1a SINE B2 -2 191 1 1 878 23 0 0 0 chr6 38497335 38497358 -111019679 + AT_rich Low_complexity Low_complexity 1 23 0 1 878 228 220 0 57 chr6 38497481 38497534 -111019503 - U6 snRNA snRNA 0 107 58 1 878 752 169 28 14 chr6 38497642 38497786 -111019251 + B1_Mus1 SINE Alu 3 148 0 1 878 233 325 12 0 chr6 38497837 38497917 -111019120 - Cheshire DNA MER1_type -2165 255 175 1 878 505 273 61 0 chr6 38497916 38498048 -111018989 + ID_B1 SINE B4 79 218 -6 1 878 728 203 0 36 chr6 38498056 38498194 -111018843 + B1_Mur1 SINE Alu 8 140 -9 1 878 267 252 5 0 chr6 38498414 38498473 -111018564 + ID4_ SINE ID 1 61 -91 1 878 377 250 111 52 chr6 38498473 38498608 -111018429 + RSINE1 SINE B4 2 144 -21 1 878 1140 51 0 0 chr6 38498785 38498923 -111018114 + B1_Mus2 SINE Alu 1 138 -9 1 878 254 293 19 23 chr6 38499030 38499135 -111017902 - ID4 SINE ID -40 112 9 1 878 436 186 23 0 chr6 38499163 38499249 -111017788 + B1_Mur1 SINE Alu 62 149 0 1 878 1090 36 73 0 chr6 38500017 38500154 -111016883 + B1_Mus2 SINE Alu 1 147 0 1 878 261 0 0 0 chr6 38501253 38501282 -111015755 + (A)n Simple_repeat Simple_repeat 1 29 0 2 878 222 91 0 0 chr6 38501802 38501835 -111015202 + (CCCG)n Simple_repeat Simple_repeat 4 36 0 3 878 243 0 0 0 chr6 38502866 38502893 -111014144 + (T)n Simple_repeat Simple_repeat 1 27 0 4 878 824 64 0 0 chr6 38503503 38503613 -111013424 - B1_Mus1 SINE Alu -21 127 18 5 878 23 33 0 0 chr6 38503731 38503761 -111013276 + AT_rich Low_complexity Low_complexity 1 30 0 6 878 496 190 59 20 chr6 38503912 38504014 -111013023 + B1F SINE Alu 41 146 -3 7 878 257 213 309 0 chr6 38505182 38505276 -111011761 + MIRc SINE MIR 20 142 -126 8 878 25 0 0 0 chr6 38505315 38505340 -111011697 + AT_rich Low_complexity Low_complexity 1 25 0 9 878 221 281 51 34 chr6 38505732 38505791 -111011246 - ID4 SINE ID -8 75 16 1 878 1270 96 27 0 chr6 38505898 38506085 -111010952 - B2_Mm1t SINE B2 0 193 2 1 878 335 233 27 0 chr6 38506264 38506337 -111010700 + ID4 SINE ID 4 78 -5 1 878 428 243 65 9 chr6 38506451 38506559 -111010478 + ID_B1 SINE B4 103 216 -8 1 878 248 369 122 18 chr6 38506835 38507064 -111009973 - Tigger10 DNA Tigger -199 1644 1392 1 878 382 276 262 36 chr6 38507205 38507453 -111009584 - Tigger10 DNA Tigger -652 1191 888 1 878 347 275 53 32 chr6 38507715 38507809 -111009228 + PB1D10 SINE Alu 1 96 -21 1 878 237 243 48 119 chr6 38507830 38507914 -111009123 + B1F SINE Alu 14 91 -58 1 878 434 312 96 55 chr6 38508223 38508369 -111008668 - B4 SINE B4 -127 165 14 1 878 1368 45 73 6 chr6 38508426 38508605 -111008432 - B2_Mm1t SINE B2 -2 191 1 1 878 241 274 0 19 chr6 38508609 38508661 -111008376 - B1F SINE Alu -86 63 13 1 878 259 303 0 22 chr6 38508696 38508787 -111008250 - Tigger10 DNA Tigger -1129 714 626 1 878 1231 39 0 13 chr6 38508819 38508974 -111008063 + B2_Mm2 SINE B2 1 153 -42 2 878 221 175 0 0 chr6 38508978 38509018 -111008019 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 878 320 321 142 35 chr6 38509051 38509283 -111007754 - Tigger10 DNA Tigger -1326 517 261 1 878 254 310 11 33 chr6 38509556 38509646 -111007391 - MT2B LTR ERVL -345 256 169 2 878 587 282 49 7 chr6 38509566 38509709 -111007328 - ID_B1 SINE B4 -55 169 21 2 878 406 178 87 19 chr6 38509722 38509825 -111007212 + PB1D7 SINE Alu 2 111 -9 2 878 414 0 0 0 chr6 38509985 38510031 -111007006 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 2 878 356 223 196 0 chr6 38510033 38510181 -111006856 - RMER17C LTR ERVK -137 273 97 2 878 21 57 0 0 chr6 38510183 38510218 -111006819 + AT_rich Low_complexity Low_complexity 1 35 0 2 878 264 250 17 0 chr6 38510275 38510335 -111006702 - PB1D9 SINE Alu -57 63 3 2 878 865 209 7 0 chr6 38510449 38510597 -111006440 - B1_Mur4 SINE Alu -1 149 1 2 878 759 214 21 0 chr6 38510959 38511104 -111005933 - B1_Mur1 SINE Alu -1 148 1 3 878 216 0 0 0 chr6 38511207 38511231 -111005806 + (T)n Simple_repeat Simple_repeat 1 24 0 3 878 1383 64 21 5 chr6 38511243 38511431 -111005606 - B2_Mm1t SINE B2 -2 191 1 3 878 484 305 10 46 chr6 38511950 38512146 -111004891 - B3A SINE B2 -4 194 6 3 878 1130 75 7 0 chr6 38512165 38512311 -111004726 - B1_Mus1 SINE Alu -1 147 1 3 878 499 232 20 0 chr6 38512454 38512553 -111004484 - B1_Mur1 SINE Alu -13 136 36 3 878 376 237 26 0 chr6 38512607 38512683 -111004354 - PB1D7 SINE Alu -33 87 10 3 878 232 119 95 0 chr6 38513104 38513146 -111003891 - B1_Mur1 SINE Alu -6 143 98 3 878 344 250 12 24 chr6 38513290 38513372 -111003665 + PB1D10 SINE Alu 37 117 0 3 878 542 239 21 48 chr6 38513571 38513716 -111003321 - B1F SINE Alu -8 141 1 3 878 454 274 49 0 chr6 38514107 38514209 -111002828 + B1F1 SINE Alu 1 107 -42 4 878 389 199 26 7 chr6 38514649 38514775 -111002262 + B3 SINE B2 2 215 -1 4 878 358 229 73 45 chr6 38514780 38514890 -111002147 + PB1D10 SINE Alu 1 113 -4 4 878 390 214 198 0 chr6 38516333 38516459 -111000578 + ID_B1 SINE B4 74 224 0 4 878 680 141 242 0 chr6 38516463 38516612 -111000425 + B2_Mm2 SINE B2 2 186 -9 4 878 1116 36 0 7 chr6 38516667 38516806 -111000231 + B1_Mm SINE Alu 1 138 -9 4 878 207 0 0 0 chr6 38516806 38516829 -111000208 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 878 249 71 71 0 chr6 38518645 38518701 -110998336 + (CAAAAA)n Simple_repeat Simple_repeat 2 61 0 4 878 474 287 8 0 chr6 38520114 38520243 -110996794 + MIR3 SINE MIR 76 205 -3 4 878 360 336 18 9 chr6 38521240 38521351 -110995686 + PB1D10 SINE Alu 1 112 -5 4 878 879 220 63 0 chr6 38521661 38521852 -110995185 - B3 SINE B2 -13 203 1 5 878 31 26 0 0 chr6 38521876 38521914 -110995123 + AT_rich Low_complexity Low_complexity 1 38 0 5 878 444 329 11 40 chr6 38521930 38522104 -110994933 - B4 SINE B4 -3 289 121 5 878 1109 186 85 20 chr6 38522136 38522440 -110994597 + MTC LTR MaLR 1 421 0 5 878 274 319 0 0 chr6 38522440 38522509 -110994528 - B4 SINE B4 -221 71 3 5 878 406 331 37 8 chr6 38522577 38522711 -110994326 - ID_B1 SINE B4 0 224 87 5 878 560 221 195 40 chr6 38522737 38522911 -110994126 - B3 SINE B2 -11 205 5 5 878 21 36 0 0 chr6 38522955 38522983 -110994054 + AT_rich Low_complexity Low_complexity 1 28 0 5 878 379 305 10 40 chr6 38522990 38523089 -110993948 - RSINE1 SINE B4 -1 164 69 5 878 293 337 53 69 chr6 38522995 38523183 -110993854 - B3 SINE B2 -30 186 2 5 878 307 286 123 41 chr6 38523198 38523344 -110993693 - ID_B1 SINE B4 -2 222 65 5 878 887 218 98 39 chr6 38523379 38523613 -110993424 - ORR1C2 LTR MaLR -6 378 131 6 878 34 0 0 0 chr6 38523841 38523875 -110993162 + AT_rich Low_complexity Low_complexity 1 34 0 6 878 228 65 0 0 chr6 38523882 38523913 -110993124 - B1_Mus1 SINE Alu -116 32 2 6 878 367 292 99 22 chr6 38524185 38524276 -110992761 - B1_Mur4 SINE Alu -51 99 2 6 878 763 263 18 18 chr6 38524544 38524714 -110992323 + B3 SINE B2 1 170 -46 6 878 1314 87 5 26 chr6 38524824 38525014 -110992023 + B2_Mm1t SINE B2 1 186 -7 6 878 1157 48 7 0 chr6 38525112 38525257 -110991780 - B1_Mm SINE Alu 0 147 2 6 878 221 326 32 11 chr6 38525271 38525364 -110991673 + B1F1 SINE Alu 55 149 0 6 878 237 65 0 0 chr6 38525364 38525395 -110991642 + (A)n Simple_repeat Simple_repeat 1 31 0 6 878 2237 92 9 3 chr6 38525430 38525746 -110991291 - ORR1A2 LTR MaLR 0 327 10 6 878 250 282 62 37 chr6 38526039 38526120 -110990917 + PB1D7 SINE Alu 25 107 -13 7 878 444 286 31 23 chr6 38526222 38526351 -110990686 - B1F2 SINE Alu -17 132 3 7 878 2894 40 27 13 chr6 38526493 38526868 -110990169 - L1Md_F2 LINE L1 -3 6579 6200 7 878 216 0 0 0 chr6 38527013 38527037 -110990000 + (T)n Simple_repeat Simple_repeat 1 24 0 7 878 711 245 0 20 chr6 38527156 38527302 -110989735 + B1_Mur3 SINE Alu 5 147 -2 7 878 461 236 7 31 chr6 38527336 38527452 -110989585 + PB1D10 SINE Alu 5 117 -3 7 878 1004 73 66 0 chr6 38527494 38527631 -110989406 - B1_Mm SINE Alu 0 147 2 7 878 264 269 37 9 chr6 38527715 38527824 -110989213 + Lx8 LINE L1 7362 7473 0 7 878 1159 35 43 0 chr6 38528206 38528347 -110988690 - B1_Mm SINE Alu 0 147 1 7 878 445 207 34 11 chr6 38528678 38528766 -110988271 - B3 SINE B2 -126 90 1 7 878 359 192 73 49 chr6 38528766 38528848 -110988189 - 4.5SRNA scRNA scRNA -6 88 5 8 878 893 179 14 0 chr6 38529616 38529761 -110987276 - B1_Mus1 SINE Alu 0 148 2 8 878 682 232 7 0 chr6 38529881 38530023 -110987014 - B1_Mur2 SINE Alu -6 143 1 8 878 305 167 0 0 chr6 38530237 38530285 -110986752 + B1_Mus2 SINE Alu 93 140 -7 8 878 466 205 41 33 chr6 38530309 38530430 -110986607 + RLTR11A LTR ERVK 407 528 0 8 878 572 200 66 8 chr6 38530755 38530876 -110986161 - B1_Mus1 SINE Alu -11 137 10 8 878 794 256 27 16 chr6 38531030 38531213 -110985824 - B3 SINE B2 -30 186 2 8 878 330 252 9 53 chr6 38532219 38532332 -110984705 - BC1_Mm scRNA scRNA -39 113 6 8 878 396 338 6 99 chr6 38532365 38532526 -110984511 + RSINE1 SINE B4 3 148 -17 8 878 1623 26 5 0 chr6 38532747 38532937 -110984100 + B2_Mm1a SINE B2 2 192 -1 8 878 207 0 0 0 chr6 38533031 38533054 -110983983 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 878 367 299 90 17 chr6 38533059 38533236 -110983801 - B3A SINE B2 -8 190 1 9 878 341 222 158 12 chr6 38533245 38533327 -110983710 - PB1D7 SINE Alu -6 114 21 9 878 214 275 123 12 chr6 38533330 38533411 -110983626 - B1_Mur2 SINE Alu -55 94 5 9 878 917 75 30 8 chr6 38534007 38534141 -110982896 - B1_Mm SINE Alu -2 145 9 9 878 839 209 75 48 chr6 38534156 38534342 -110982695 - B3 SINE B2 -24 192 2 9 878 316 232 301 9 chr6 38534451 38534564 -110982473 + RSINE1 SINE B4 2 147 -18 9 878 767 303 47 0 chr6 38534673 38534884 -110982153 - ID_B1 SINE B4 -2 222 2 9 879 297 307 40 0 chr6 38535277 38535352 -110981685 - ID2 SINE ID -4 79 2 9 879 688 98 148 0 chr6 38535428 38535550 -110981487 - B1_Mus1 SINE Alu -8 140 1 9 879 1576 26 5 10 chr6 38535632 38535826 -110981211 - B2_Mm1t SINE B2 0 193 1 1 879 630 131 0 0 chr6 38535828 38535950 -110981087 + (TC)n Simple_repeat Simple_repeat 2 123 0 1 879 267 54 0 0 chr6 38535950 38535987 -110981050 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 879 594 213 0 39 chr6 38536020 38536147 -110980890 - B1_Mus1 SINE Alu -23 125 4 1 879 639 225 36 7 chr6 38536170 38536309 -110980728 - B1_Mus2 SINE Alu 0 147 5 1 879 540 175 84 42 chr6 38536436 38536579 -110980458 + B1_Mur4 SINE Alu 2 150 0 1 879 427 294 116 0 chr6 38536659 38536778 -110980259 + B3 SINE B2 71 196 -2 1 879 467 234 137 98 chr6 38537437 38537641 -110979396 - B3 SINE B2 -3 213 2 1 879 727 251 128 57 chr6 38537908 38538193 -110978844 - ORR1D2 LTR MaLR -5 369 1 1 879 834 193 14 0 chr6 38538227 38538372 -110978665 - B1_Mur3 SINE Alu 0 149 3 1 879 527 231 8 40 chr6 38539350 38539476 -110977561 - B1_Mur4 SINE Alu -11 139 18 1 879 265 273 38 25 chr6 38539425 38539504 -110977533 - B4 SINE B4 -143 149 70 1 879 674 217 41 27 chr6 38539510 38539657 -110977380 - B1_Mur3 SINE Alu 0 149 1 1 879 843 175 42 0 chr6 38539861 38540004 -110977033 - B1_Mur4 SINE Alu 0 150 2 1 879 253 274 0 0 chr6 38540013 38540075 -110976962 - B3 SINE B2 -10 206 145 1 879 5529 65 8 4 chr6 38540134 38540856 -110976181 + L1_Mus2 LINE L1 5842 6566 0 1 879 660 172 72 54 chr6 38540903 38541069 -110975968 + B2_Mm2 SINE B2 1 169 -26 1 879 581 235 241 0 chr6 38541077 38541243 -110975794 - B3 SINE B2 -9 207 2 1 879 234 204 20 39 chr6 38541461 38541512 -110975525 - B1_Mur2 SINE Alu -1 148 99 1 879 39 38 0 0 chr6 38541563 38541616 -110975421 + AT_rich Low_complexity Low_complexity 1 53 0 1 879 328 342 63 27 chr6 38541953 38542064 -110974973 + B3A SINE B2 77 191 -7 1 879 288 248 88 22 chr6 38542095 38542231 -110974806 + MER31-int LTR ERV1 3545 3689 -1247 1 879 180 111 0 0 chr6 38542911 38542938 -110974099 + (T)n Simple_repeat Simple_repeat 1 27 0 1 879 21 0 0 0 chr6 38543254 38543275 -110973762 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 831 179 0 0 chr6 38544185 38544319 -110972718 - B1_Mur4 SINE Alu -6 144 11 1 879 234 302 29 59 chr6 38544369 38544471 -110972566 - Kanga11a DNA Tc2 -182 788 690 1 879 561 219 32 40 chr6 38545102 38545226 -110971811 - B1_Mur2 SINE Alu -5 144 22 1 879 263 206 0 137 chr6 38545164 38545237 -110971800 - MT2B LTR ERVL -363 238 176 1 879 1202 54 0 0 chr6 38545471 38545619 -110971418 - B1_Mus1 SINE Alu 0 148 1 1 879 1183 87 54 11 chr6 38545619 38545804 -110971233 - B2_Mm1t SINE B2 0 193 1 1 879 217 317 0 0 chr6 38545911 38545971 -110971066 - L2a LINE L2 -29 3397 3338 1 879 364 318 122 50 chr6 38546167 38546306 -110970731 + B1F SINE Alu 1 149 0 1 879 256 277 94 12 chr6 38546307 38546407 -110970630 + PB1D7 SINE Alu 4 117 0 1 879 1144 61 0 7 chr6 38546412 38546560 -110970477 + B1_Mus1 SINE Alu 1 147 -1 1 879 775 264 60 22 chr6 38546831 38547013 -110970024 + B3A SINE B2 1 189 -9 1 879 395 208 122 78 chr6 38547439 38547554 -110969483 + B3 SINE B2 69 188 -28 1 879 1247 99 38 11 chr6 38547618 38547801 -110969236 - B2_Mm2 SINE B2 -6 189 2 1 879 534 299 37 55 chr6 38547839 38548002 -110969035 + B3A SINE B2 1 160 -38 1 879 369 0 0 0 chr6 38548009 38548050 -110968987 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 879 1625 16 21 0 chr6 38548094 38548281 -110968756 - B2_Mm1a SINE B2 -1 192 2 1 879 767 182 7 39 chr6 38548925 38549079 -110967958 + B1_Mur4 SINE Alu 1 149 -1 1 879 443 222 40 0 chr6 38550259 38550358 -110966679 - B3 SINE B2 -94 122 20 1 879 440 198 148 35 chr6 38550365 38550480 -110966557 - B1_Mur1 SINE Alu -8 141 14 1 879 294 271 103 52 chr6 38550480 38550495 -110966542 - ID_B1 SINE B4 -2 189 80 1 879 790 242 108 0 chr6 38550891 38551077 -110965960 + B3 SINE B2 1 206 -10 1 879 51 31 0 0 chr6 38551183 38551248 -110965789 + AT_rich Low_complexity Low_complexity 1 65 0 1 879 266 293 80 10 chr6 38551435 38551535 -110965502 - PB1D10 SINE Alu 0 117 11 1 879 252 0 0 0 chr6 38551643 38551671 -110965366 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 879 471 18 0 0 chr6 38551671 38551726 -110965311 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 879 580 297 29 72 chr6 38551899 38552106 -110964931 - B3A SINE B2 0 198 1 1 879 1076 108 45 0 chr6 38552223 38552399 -110964638 + B2_Mm2 SINE B2 1 184 -11 1 879 231 105 0 136 chr6 38552398 38552442 -110964595 - PB1D9 SINE Alu -17 103 66 1 879 548 283 116 14 chr6 38553003 38553150 -110963887 + RSINE1 SINE B4 1 162 -3 1 879 235 268 69 11 chr6 38553809 38553896 -110963141 - MER103 DNA DNA -58 108 17 1 879 255 122 0 0 chr6 38554435 38554484 -110962553 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 879 379 253 68 34 chr6 38554517 38554615 -110962422 - B1F1 SINE Alu -16 101 1 1 879 22 35 0 0 chr6 38555216 38555245 -110961792 + AT_rich Low_complexity Low_complexity 1 29 0 1 879 358 258 20 20 chr6 38555918 38556017 -110961020 + PB1D7 SINE Alu 22 120 0 1 879 1587 26 5 11 chr6 38556143 38556334 -110960703 + B2_Mm1a SINE B2 2 191 -2 1 879 1126 51 29 0 chr6 38556458 38556596 -110960441 - B1_Mm SINE Alu -5 142 1 1 879 1215 41 7 0 chr6 38557333 38557478 -110959559 - B1_Mus2 SINE Alu 0 147 2 1 879 293 257 26 79 chr6 38557609 38557723 -110959314 + MER58C DNA MER1_type 6 113 -102 1 879 387 0 0 0 chr6 38559040 38559083 -110957954 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 879 458 293 21 57 chr6 38559560 38559701 -110957336 - ID_B1 SINE B4 -7 217 82 1 879 352 336 9 9 chr6 38559817 38559922 -110957115 - PB1D10 SINE Alu 0 117 13 1 879 366 307 49 66 chr6 38560745 38560867 -110956170 + PB1D7 SINE Alu 1 120 0 1 879 204 40 0 0 chr6 38561083 38561108 -110955929 + (T)n Simple_repeat Simple_repeat 1 25 0 1 879 1050 68 6 70 chr6 38561108 38561266 -110955771 - B1_Mus1 SINE Alu 0 148 1 1 879 305 286 114 32 chr6 38561358 38561481 -110955556 + L1ME2 LINE L1 5435 5567 -612 1 879 303 302 103 0 chr6 38561554 38561670 -110955367 + L1ME2 LINE L1 5672 5799 -365 1 879 271 265 72 0 chr6 38561705 38561788 -110955249 + L1ME2 LINE L1 5868 5956 -208 1 879 23 54 0 0 chr6 38561889 38561926 -110955111 + AT_rich Low_complexity Low_complexity 1 37 0 1 879 3211 163 53 38 chr6 38562012 38562598 -110954439 + RLTR17 LTR ERVK 98 692 0 1 879 1234 61 0 0 chr6 38562730 38562877 -110954160 - B1_Mus1 SINE Alu 0 148 2 1 879 314 350 42 8 chr6 38562956 38563074 -110953963 + RSINE1 SINE B4 5 126 -39 1 879 731 226 110 104 chr6 38563126 38563462 -110953575 - RLTR11B LTR ERVK 0 453 116 1 879 585 128 32 11 chr6 38563470 38563565 -110953472 - MYSERV6-int LTR ERVK -67 8892 8796 1 879 1687 187 89 16 chr6 38563741 38564122 -110952915 - MYSERV6-int LTR ERVK -177 8782 8374 1 879 10489 229 99 68 chr6 38564131 38565760 -110951277 - MYSERV6-int LTR ERVK -718 5832 4202 1 879 1265 41 0 0 chr6 38565760 38565907 -110951130 - B1_Mus2 SINE Alu 0 147 1 1 879 10489 176 46 30 chr6 38565907 38567962 -110949075 - MYSERV6-int LTR ERVK -4540 4419 2324 1 879 254 241 36 60 chr6 38568319 38568403 -110948634 - RLTR11B LTR ERVK -443 85 4 1 879 2118 104 24 0 chr6 38568404 38568701 -110948336 - ORR1A2 LTR MaLR -22 304 1 1 879 9301 151 72 46 chr6 38568701 38568767 -110948270 - ORR1A2-int LTR MaLR 0 1963 1898 1 879 4169 62 77 7 chr6 38568767 38569315 -110947722 - LTRIS_Mus LTR ERV1 -1 586 1 1 879 9301 151 72 46 chr6 38569315 38571161 -110945876 - ORR1A2-int LTR MaLR -66 1897 1 1 879 2445 90 12 0 chr6 38571161 38571484 -110945553 - ORR1A2 LTR MaLR 0 327 1 1 879 412 176 296 0 chr6 38572063 38572171 -110944866 + B1_Mur2 SINE Alu 9 148 -1 1 879 1309 107 27 0 chr6 38572698 38572885 -110944152 + B2_Mm2 SINE B2 1 192 -3 1 879 185 194 0 0 chr6 38572973 38573004 -110944033 + MIR SINE MIR 59 89 -173 1 879 341 181 149 46 chr6 38573222 38573309 -110943728 + B1_Mur4 SINE Alu 5 99 -21 1 879 274 340 53 0 chr6 38573615 38573709 -110943328 + B4A SINE B4 3 101 -191 1 879 278 267 78 70 chr6 38573752 38573897 -110943140 + B4 SINE B4 67 285 -7 1 879 472 246 25 96 chr6 38573928 38574085 -110942952 + ID_B1 SINE B4 79 224 0 1 879 750 165 30 15 chr6 38573952 38574087 -110942950 + B1F2 SINE Alu 13 149 0 1 879 608 309 69 0 chr6 38574124 38574299 -110942738 - B3 SINE B2 -16 200 14 1 879 234 0 0 0 chr6 38575080 38575106 -110941931 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 879 544 207 112 46 chr6 38575365 38575517 -110941520 - RSINE1 SINE B4 0 165 4 1 879 423 250 147 13 chr6 38575523 38575673 -110941364 - MLT1C LTR MaLR -292 175 6 1 879 1090 225 144 0 chr6 38576160 38576445 -110940592 - MTEb LTR MaLR 0 379 54 1 879 426 240 163 29 chr6 38576503 38576675 -110940362 - B3 SINE B2 -11 205 11 1 879 502 186 0 44 chr6 38577019 38577109 -110939928 + MTE-int LTR MaLR 1418 1503 -77 1 879 617 171 108 0 chr6 38577110 38577239 -110939798 + B1F1 SINE Alu 2 144 -5 1 879 295 266 115 67 chr6 38577280 38577445 -110939592 + ORR1E LTR MaLR 1 173 -186 1 879 270 271 35 12 chr6 38577476 38577562 -110939475 + ORR1E LTR MaLR 263 350 -9 1 879 1081 176 217 65 chr6 38578358 38578667 -110938370 + MT2A LTR ERVL 178 533 0 1 879 983 157 126 0 chr6 38578672 38578870 -110938167 + MTD LTR MaLR 193 415 -4 1 879 2341 163 234 50 chr6 38578877 38579515 -110937522 + MTD-int LTR MaLR 28 782 -476 1 879 459 131 11 97 chr6 38579519 38579612 -110937425 + MTD LTR MaLR 329 413 -6 1 879 317 86 17 0 chr6 38579615 38579673 -110937364 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 879 822 159 20 7 chr6 38581028 38581174 -110935863 - B1_Mur1 SINE Alu -1 148 1 1 879 347 241 6 170 chr6 38581174 38581238 -110935799 - MT2B2 LTR ERVL -428 156 120 2 879 351 235 0 0 chr6 38581305 38581373 -110935664 + PB1D10 SINE Alu 1 68 -49 2 879 1227 108 14 42 chr6 38581376 38581588 -110935449 + L1_Mus3 LINE L1 6427 6632 -6 2 879 29 47 0 0 chr6 38581640 38581683 -110935354 + AT_rich Low_complexity Low_complexity 1 43 0 2 879 823 189 149 0 chr6 38581736 38581911 -110935126 + B3 SINE B2 1 201 -15 2 879 248 281 31 0 chr6 38581970 38582034 -110935003 - ID4 SINE ID -15 68 3 2 879 280 323 96 15 chr6 38582293 38582428 -110934609 - B1F SINE Alu 0 149 4 2 879 733 122 117 44 chr6 38582459 38582596 -110934441 + B1_Mur4 SINE Alu 2 148 -2 2 879 1176 68 0 0 chr6 38582602 38582749 -110934288 + B1_Mus2 SINE Alu 1 147 0 2 879 284 274 36 0 chr6 38582785 38582869 -110934168 - PB1D10 SINE Alu -30 87 1 2 879 826 225 87 11 chr6 38583897 38584081 -110932956 + ID_B1 SINE B4 19 216 -8 2 879 203 60 42 56 chr6 38584374 38584445 -110932592 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 2 879 684 170 234 23 chr6 38584716 38584891 -110932146 + B3 SINE B2 1 212 -4 2 879 290 280 83 93 chr6 38584924 38585129 -110931908 + MLT1D LTR MaLR 6 208 -297 2 879 256 358 82 35 chr6 38585179 38585350 -110931687 + MLT1D LTR MaLR 320 498 -7 2 879 1354 192 189 29 chr6 38585631 38585980 -110931057 + MTD LTR MaLR 1 405 -14 2 879 657 173 118 15 chr6 38587657 38587792 -110929245 + B1F2 SINE Alu 1 149 0 2 879 251 191 0 31 chr6 38587908 38587973 -110929064 + T-rich Low_complexity Low_complexity 4 66 0 2 879 617 171 153 15 chr6 38587975 38588106 -110928931 - B1_Mur2 SINE Alu 0 149 1 2 879 399 308 47 26 chr6 38588115 38588302 -110928735 - B3A SINE B2 -3 190 1 2 879 192 297 108 21 chr6 38588307 38588400 -110928637 + MER5A DNA MER1_type 53 153 -36 2 879 243 206 14 100 chr6 38588400 38588470 -110928567 + 4.5SRNA scRNA scRNA 23 86 -8 2 879 309 189 38 95 chr6 38588420 38588431 -110928606 + ID_B1 SINE B4 123 218 -3 2 879 583 132 88 0 chr6 38588431 38588522 -110928515 + B1_Mus2 SINE Alu 43 141 -6 2 879 1086 90 14 0 chr6 38588531 38588675 -110928362 + B1_Mus2 SINE Alu 2 147 0 2 879 242 0 61 0 chr6 38588677 38588710 -110928327 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 879 306 301 0 27 chr6 38588794 38588869 -110928168 - B4 SINE B4 -219 73 1 2 879 336 179 274 0 chr6 38588912 38589007 -110928030 + ID_B1 SINE B4 102 222 -2 2 879 1138 56 0 27 chr6 38589179 38589326 -110927711 - B1_Mus1 SINE Alu -5 143 1 2 879 830 62 0 9 chr6 38589332 38589446 -110927591 + (TTTCC)n Simple_repeat Simple_repeat 3 115 0 2 879 1222 29 0 0 chr6 38589446 38589584 -110927453 - B1_Mus2 SINE Alu -8 139 2 2 879 463 281 7 73 chr6 38589706 38589856 -110927181 - ID_B1 SINE B4 0 224 85 2 879 829 287 98 83 chr6 38590022 38590400 -110926637 + MLT1C LTR MaLR 58 453 -14 2 879 698 306 112 26 chr6 38590702 38591014 -110926023 - MTD LTR MaLR -79 340 2 2 879 315 104 0 0 chr6 38591644 38591692 -110925345 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 879 304 318 151 37 chr6 38591995 38592266 -110924771 - L1M5 LINE L1 -448 5676 5375 2 879 1452 190 83 0 chr6 38593025 38593315 -110923722 + MTEb LTR MaLR 13 326 -53 2 879 199 95 47 23 chr6 38593317 38593360 -110923677 + CT-rich Low_complexity Low_complexity 1 44 0 2 879 283 214 53 97 chr6 38593731 38593844 -110923193 + MLT1A0 LTR MaLR 13 125 -249 2 879 593 202 0 0 chr6 38593860 38593974 -110923063 + B3 SINE B2 2 115 -101 2 879 1467 60 11 6 chr6 38594064 38594247 -110922790 + B2_Mm2 SINE B2 1 184 -11 2 879 230 176 0 19 chr6 38596661 38596713 -110920324 + (TCG)n Simple_repeat Simple_repeat 2 52 0 2 879 645 14 0 0 chr6 38596842 38596916 -110920121 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 2 879 192 125 0 0 chr6 38597169 38597201 -110919836 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 2 879 827 158 15 0 chr6 38597219 38597352 -110919685 - B1_Mur4 SINE Alu -14 136 2 2 879 647 238 64 73 chr6 38598545 38598610 -110918427 - B3 SINE B2 0 216 159 2 879 2851 151 96 19 chr6 38598610 38599142 -110917895 - RMER15 LTR ERVL -2 573 1 2 879 647 238 64 73 chr6 38599142 38599199 -110917838 - B3 SINE B2 -58 158 103 2 879 1248 175 9 5 chr6 38599199 38599423 -110917614 - URR1B DNA MER1_type 0 225 1 2 879 647 238 64 73 chr6 38599423 38599517 -110917520 - B3 SINE B2 -114 102 1 2 879 189 0 0 0 chr6 38599988 38600009 -110917028 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 2 879 342 327 60 7 chr6 38600026 38600177 -110916860 - MER91A DNA Tip100 -37 159 1 2 879 367 252 42 93 chr6 38601203 38601321 -110915716 - PB1D10 SINE Alu -1 116 5 2 879 561 309 62 0 chr6 38601237 38601399 -110915638 - ID_B1 SINE B4 -51 173 2 2 879 813 219 119 5 chr6 38601836 38602029 -110915008 - B3 SINE B2 0 216 2 2 879 215 190 0 17 chr6 38602089 38602148 -110914889 + C-rich Low_complexity Low_complexity 1 58 0 2 879 279 0 0 0 chr6 38602150 38602181 -110914856 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 879 244 294 11 56 chr6 38602189 38602210 -110914827 - ID_B1 SINE B4 -121 103 18 2 879 255 303 0 43 chr6 38602210 38602279 -110914758 - ID4 SINE ID 0 83 18 2 879 235 177 0 31 chr6 38602324 38602388 -110914649 + T-rich Low_complexity Low_complexity 3 64 0 2 879 259 207 52 0 chr6 38602412 38602470 -110914567 - ID_B1 SINE B4 -78 146 86 2 879 337 125 0 0 chr6 38602419 38602475 -110914562 - B1_Mus1 SINE Alu -92 56 1 2 879 249 266 24 71 chr6 38602475 38602546 -110914491 + MLT1K LTR MaLR 98 164 -431 2 879 1821 226 40 5 chr6 38602583 38602988 -110914049 + MTD LTR MaLR 1 419 0 2 879 2008 142 3 10 chr6 38603369 38603682 -110913355 + RLTR10E LTR ERVK 1 311 0 2 879 2120 143 70 6 chr6 38603919 38604278 -110912759 - RLTR14 LTR ERV1 0 382 1 2 879 231 246 141 7 chr6 38604294 38604429 -110912608 + L1MB3 LINE L1 5935 6087 -96 2 879 288 0 0 0 chr6 38604490 38604522 -110912515 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 879 4292 34 0 53 chr6 38604636 38604806 -110912231 + RLTR1C LTR ERV1 1 168 -335 2 879 1241 48 0 0 chr6 38604806 38604953 -110912084 + B1_Mus2 SINE Alu 1 147 0 2 879 4292 34 0 53 chr6 38604953 38605313 -110911724 + RLTR1C LTR ERV1 169 503 0 2 879 424 34 152 0 chr6 38605366 38605425 -110911612 + MTA_Mm LTR MaLR 4 71 -325 2 879 922 43 35 0 chr6 38605426 38605542 -110911495 + MTB LTR MaLR 281 400 0 2 879 315 0 0 0 chr6 38605558 38605593 -110911444 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 879 543 258 86 7 chr6 38605759 38605911 -110911126 - RSINE1 SINE B4 0 165 2 2 879 524 278 71 86 chr6 38605926 38606123 -110910914 - B4 SINE B4 -75 217 24 2 879 531 255 28 99 chr6 38606193 38606522 -110910515 + MTEa LTR MaLR 1 379 0 2 879 568 247 182 0 chr6 38606614 38606784 -110910253 - ID_B1 SINE B4 -23 201 1 2 879 880 210 21 21 chr6 38607362 38607552 -110909485 - B2_Mm2 SINE B2 -5 190 1 2 879 362 200 0 70 chr6 38607641 38607727 -110909310 - B4 SINE B4 -130 162 83 2 879 528 330 5 21 chr6 38607813 38607999 -110909038 - B4A SINE B4 -2 290 108 2 879 254 301 59 65 chr6 38608033 38608121 -110908916 - L1MA7 LINE L1 -162 6129 6043 2 879 1470 143 9 30 chr6 38608121 38608351 -110908686 + URR1B DNA MER1_type 1 225 0 2 879 254 301 59 65 chr6 38608351 38608415 -110908622 - L1MA7 LINE L1 -249 6042 5978 2 879 329 0 24 0 chr6 38608529 38608570 -110908467 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2 879 1093 79 0 0 chr6 38608570 38608709 -110908328 - B1_Mus1 SINE Alu -9 139 1 2 879 295 319 99 64 chr6 38608775 38608946 -110908091 - LTR89 LTR ERVL? -5 874 698 2 879 268 236 83 0 chr6 38609078 38609150 -110907887 - LTR89 LTR ERVL? -355 524 447 2 879 387 289 60 95 chr6 38609858 38610026 -110907011 + MamGypLTR1a LTR Gypsy 623 784 0 2 879 207 100 0 0 chr6 38610188 38610218 -110906819 + (CGTG)n Simple_repeat Simple_repeat 2 31 0 2 879 650 221 124 0 chr6 38610219 38610364 -110906673 - RSINE1 SINE B4 0 165 3 2 879 612 156 0 0 chr6 38611213 38611322 -110905715 + (CACCAT)n Simple_repeat Simple_repeat 1 109 0 2 879 336 244 496 0 chr6 38611325 38611440 -110905597 - ID_B1 SINE B4 -15 209 37 2 879 1081 210 23 23 chr6 38611440 38611631 -110905406 - ORR1D1 LTR MaLR 0 374 182 2 879 351 0 0 0 chr6 38611631 38611670 -110905367 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 879 1017 210 23 23 chr6 38611670 38611697 -110905340 - ORR1D1 LTR MaLR -193 181 156 2 879 358 248 74 44 chr6 38611861 38611996 -110905041 - B1F SINE Alu -6 143 5 2 879 515 196 60 8 chr6 38612064 38612198 -110904839 + B1F2 SINE Alu 1 141 -8 2 879 630 284 26 64 chr6 38612209 38612442 -110904595 + B4A SINE B4 1 224 -68 2 879 447 240 132 0 chr6 38612459 38612588 -110904449 + B1_Mur2 SINE Alu 4 149 0 2 879 23 33 0 0 chr6 38613142 38613172 -110903865 + GC_rich Low_complexity Low_complexity 1 30 0 2 879 38 22 0 0 chr6 38613240 38613285 -110903752 + GC_rich Low_complexity Low_complexity 1 45 0 2 879 424 266 24 8 chr6 38616774 38616899 -110900138 + MLT1C LTR MaLR 43 169 -298 2 879 646 345 97 7 chr6 38617529 38617838 -110899199 - MER2 DNA MER2_type -3 342 6 2 879 294 313 45 111 chr6 38619036 38619413 -110897624 + HAL1 LINE L1 1007 1358 -1149 2 879 680 291 47 413 chr6 38619622 38619647 -110897390 - B3A SINE B2 -15 178 154 2 879 432 55 0 0 chr6 38619647 38619702 -110897335 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 879 680 248 37 0 chr6 38619702 38619857 -110897180 - B3A SINE B2 -36 162 2 2 879 342 306 105 14 chr6 38619860 38620079 -110896958 + HAL1 LINE L1 1675 1913 -594 2 879 615 210 41 95 chr6 38620284 38620342 -110896695 + L1MB4 LINE L1 5491 5548 -632 3 879 3070 49 21 0 chr6 38620342 38620730 -110896307 - MTA_Mm LTR MaLR 0 396 1 3 879 615 210 41 95 chr6 38620730 38620782 -110896255 + L1MB4 LINE L1 5549 5595 -585 3 879 1485 27 33 0 chr6 38620782 38620966 -110896071 - B2_Mm1t SINE B2 -3 190 1 3 879 615 210 41 95 chr6 38620966 38621075 -110895962 + L1MB4 LINE L1 5596 5699 -481 3 879 225 0 0 0 chr6 38621109 38621134 -110895903 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 879 333 62 0 0 chr6 38621134 38621182 -110895855 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 879 715 252 86 106 chr6 38621206 38621508 -110895529 - MTE2a LTR MaLR -62 317 22 3 879 673 277 133 17 chr6 38621533 38621885 -110895152 + L1MB4 LINE L1 5787 6179 -1 3 879 518 69 0 0 chr6 38621906 38621978 -110895059 + B1_Mur4 SINE Alu 76 147 -3 3 879 823 215 0 0 chr6 38622051 38622200 -110894837 + B1_Mur4 SINE Alu 2 150 0 3 879 3559 161 113 68 chr6 38622512 38623364 -110893673 - RMER19B LTR ERVK -12 890 1 3 879 220 300 17 0 chr6 38623835 38623895 -110893142 - L2a LINE L2 -3 3423 3363 3 879 499 228 17 26 chr6 38623914 38624031 -110893006 - MER34A LTR ERV1 -448 123 8 3 879 448 211 21 0 chr6 38624134 38624229 -110892808 - ID_B1 SINE B4 -127 97 1 3 879 512 145 0 0 chr6 38624274 38624357 -110892680 - B3A SINE B2 -115 83 1 3 879 317 312 54 34 chr6 38624793 38624942 -110892095 + L3 LINE CR1 3532 3683 -806 3 879 378 219 108 54 chr6 38624944 38625074 -110891963 + ID_B1 SINE B4 88 224 0 3 879 1376 34 0 11 chr6 38625136 38625316 -110891721 - L1Md_F3 LINE L1 -12 6572 6395 3 879 580 170 38 0 chr6 38625324 38625430 -110891607 + B1_Mur1 SINE Alu 21 130 -19 3 879 215 275 0 8 chr6 38625494 38625626 -110891411 + (TG)n Simple_repeat Simple_repeat 1 131 0 3 879 624 237 0 3 chr6 38625650 38625998 -110891039 + (TG)n Simple_repeat Simple_repeat 1 346 0 3 879 408 299 63 16 chr6 38626001 38626191 -110890846 - B3 SINE B2 -17 199 1 3 879 369 0 0 0 chr6 38626201 38626242 -110890795 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 879 340 243 0 0 chr6 38627857 38627927 -110889110 - MLT1J LTR MaLR -345 167 98 3 879 1275 95 26 5 chr6 38628474 38628665 -110888372 - B2_Mm2 SINE B2 0 195 1 3 879 861 103 0 0 chr6 38628665 38628791 -110888246 + (TTTC)n Simple_repeat Simple_repeat 1 126 0 3 879 417 86 0 0 chr6 38628791 38628849 -110888188 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 3 879 444 125 313 26 chr6 38628849 38628964 -110888073 - B2_Mm2 SINE B2 0 195 48 3 879 1128 126 11 0 chr6 38629030 38629205 -110887832 - B2_Mm1t SINE B2 -16 177 1 3 879 465 19 0 0 chr6 38629740 38629794 -110887243 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 879 185 237 17 0 chr6 38630483 38630542 -110886495 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 879 1739 134 4 4 chr6 38631122 38631392 -110885645 + MTC LTR MaLR 1 270 -151 3 879 987 223 10 0 chr6 38631976 38632178 -110884859 - B3 SINE B2 -9 207 4 3 879 617 58 0 33 chr6 38632292 38632382 -110884655 - B1_Mus2 SINE Alu -2 145 59 3 879 231 297 27 0 chr6 38632744 38632818 -110884219 - MLT1J-int LTR MaLR -634 753 678 3 879 442 174 13 0 chr6 38633077 38633156 -110883881 - B1F1 SINE Alu -56 93 22 3 879 322 198 75 21 chr6 38633267 38633360 -110883677 - PB1D10 SINE Alu -19 98 1 3 879 378 195 13 13 chr6 38633747 38633825 -110883212 - RSINE1 SINE B4 -85 80 3 3 879 3890 50 0 0 chr6 38634180 38634664 -110882373 + L1_Mus1 LINE L1 6084 6567 0 3 879 1392 79 0 5 chr6 38634846 38635037 -110882000 + B2_Mm2 SINE B2 1 190 -5 3 879 473 240 0 126 chr6 38635098 38635241 -110881796 + PB1 SINE Alu 1 125 -2 3 879 1561 41 0 15 chr6 38635607 38635803 -110881234 - B2_Mm1t SINE B2 0 193 1 3 879 740 306 105 8 chr6 38636693 38637055 -110879982 + L1MB4 LINE L1 5599 5995 -185 3 879 450 0 0 0 chr6 38639041 38639091 -110877946 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 879 240 35 0 0 chr6 38639204 38639233 -110877804 + (CGGG)n Simple_repeat Simple_repeat 1 29 0 3 879 492 18 0 0 chr6 38639526 38639583 -110877454 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 879 334 246 0 0 chr6 38639752 38639821 -110877216 + B1_Mur1 SINE Alu 79 147 -2 3 879 254 66 48 32 chr6 38641481 38641544 -110875493 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 3 879 333 0 0 0 chr6 38643338 38643375 -110873662 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 879 23 0 0 0 chr6 38645202 38645225 -110871812 + AT_rich Low_complexity Low_complexity 1 23 0 3 879 192 152 0 0 chr6 38647875 38647908 -110869129 + T-rich Low_complexity Low_complexity 1 33 0 3 879 231 304 0 0 chr6 38648597 38648666 -110868371 + GA-rich Low_complexity Low_complexity 2 70 0 3 879 348 270 11 0 chr6 38650398 38650487 -110866550 - PB1D10 SINE Alu -5 112 23 3 879 181 0 0 65 chr6 38651265 38651296 -110865741 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 3 879 41 58 0 0 chr6 38655297 38655366 -110861671 + AT_rich Low_complexity Low_complexity 1 69 0 3 879 972 67 0 7 chr6 38655366 38655501 -110861536 - B1_Mus1 SINE Alu 0 148 15 3 879 1837 225 122 22 chr6 38655501 38655609 -110861428 - Lx7 LINE L1 -12 7684 7561 3 879 225 0 0 0 chr6 38655609 38655634 -110861403 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 879 330 67 0 0 chr6 38655634 38655678 -110861359 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 879 1837 225 122 22 chr6 38655678 38656101 -110860936 - Lx7 LINE L1 -136 7560 7100 3 879 590 211 19 0 chr6 38656119 38656223 -110860814 - PB1D9 SINE Alu -13 107 2 3 879 568 246 96 43 chr6 38656673 38656860 -110860177 - B3A SINE B2 0 198 2 3 879 271 270 81 66 chr6 38656897 38657095 -110859942 + L1MB4 LINE L1 5876 6076 -104 3 879 245 81 0 0 chr6 38658308 38658345 -110858692 - B2_Mm2 SINE B2 -94 101 65 3 879 1111 82 58 12 chr6 38658389 38658562 -110858475 - B2_Mm2 SINE B2 -13 182 2 3 879 203 146 24 0 chr6 38659146 38659187 -110857850 + GA-rich Low_complexity Low_complexity 3 44 0 3 879 234 254 0 0 chr6 38659461 38659520 -110857517 + L2c LINE L2 3107 3165 -222 3 879 1225 220 28 21 chr6 38660151 38660434 -110856603 - B4 SINE B4 0 292 8 3 879 220 295 131 0 chr6 38661330 38661391 -110855646 - ID SINE ID -154 70 2 3 879 27 0 0 0 chr6 38661394 38661421 -110855616 + AT_rich Low_complexity Low_complexity 1 27 0 3 879 21 0 0 0 chr6 38662220 38662241 -110854796 + AT_rich Low_complexity Low_complexity 1 21 0 3 879 193 312 0 0 chr6 38662310 38662358 -110854679 + MIRm SINE MIR 107 154 -122 3 879 1022 259 127 9 chr6 38662891 38663215 -110853822 + ORR1D2 LTR MaLR 3 364 -6 3 880 465 19 0 0 chr6 38666747 38666801 -110850236 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 880 864 287 51 4 chr6 38666811 38667066 -110849971 - B4 SINE B4 -25 267 1 3 880 1004 77 22 4 chr6 38667242 38667391 -110849646 + B1_Mus1 SINE Alu 14 309 -2 3 880 1091 157 85 10 chr6 38667461 38667661 -110849376 - B3 SINE B2 0 216 2 3 880 1458 224 81 28 chr6 38668025 38668456 -110848581 + MER31A LTR ERV1 2 455 -30 3 880 222 217 206 52 chr6 38669205 38669302 -110847735 - MIRc SINE MIR -32 236 125 3 880 181 333 0 74 chr6 38669370 38669451 -110847586 + MIRm SINE MIR 199 273 -3 3 880 348 245 21 21 chr6 38670275 38670371 -110846666 - MIRb SINE MIR -89 179 84 3 880 327 304 54 0 chr6 38670549 38670641 -110846396 - PB1D10 SINE Alu -2 115 19 3 880 294 351 84 0 chr6 38671037 38671239 -110845798 - MARNA DNA Mariner -46 540 322 3 880 1068 103 0 0 chr6 38671966 38672122 -110844915 + (TTTCC)n Simple_repeat Simple_repeat 5 160 0 3 880 351 65 0 0 chr6 38672133 38672179 -110844858 + (TTTC)n Simple_repeat Simple_repeat 1 46 0 3 880 588 142 28 0 chr6 38672179 38672285 -110844752 - B1_Mus1 SINE Alu -1 147 39 3 880 1155 82 0 0 chr6 38673104 38673250 -110843787 + B1_Mus2 SINE Alu 2 147 0 3 880 643 234 8 3 chr6 38673330 38673467 -110843570 + B1_Mur1 SINE Alu 1 135 -15 3 880 26 0 0 0 chr6 38673652 38673678 -110843359 + AT_rich Low_complexity Low_complexity 1 26 0 3 880 360 284 54 72 chr6 38673815 38673982 -110843055 - RSINE1 SINE B4 0 165 2 3 880 529 211 18 9 chr6 38673985 38674095 -110842942 - PB1D10 SINE Alu -6 111 1 3 880 227 206 35 24 chr6 38674154 38674219 -110842818 - MIR SINE MIR -95 173 107 3 880 540 81 0 0 chr6 38674645 38674719 -110842318 + (TTCC)n Simple_repeat Simple_repeat 2 75 0 3 880 1113 77 0 23 chr6 38674719 38674892 -110842145 + (TTTC)n Simple_repeat Simple_repeat 1 169 0 3 880 1196 69 0 0 chr6 38674892 38675051 -110841986 - B2_Mm2 SINE B2 -34 161 3 3 880 225 0 0 0 chr6 38675335 38675360 -110841677 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 880 406 244 11 0 chr6 38675424 38675514 -110841523 + B4A SINE B4 3 93 -199 3 880 270 228 50 12 chr6 38675628 38675708 -110841329 - MTC LTR MaLR -226 195 113 3 880 21 57 0 0 chr6 38676195 38676230 -110840807 + AT_rich Low_complexity Low_complexity 1 35 0 3 880 216 0 0 0 chr6 38676851 38676875 -110840162 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 880 330 285 124 29 chr6 38677373 38677615 -110839422 + L1M2 LINE L1 3661 3925 -2218 3 880 1002 178 68 24 chr6 38678019 38678226 -110838811 - B3 SINE B2 0 216 1 3 880 192 91 22 43 chr6 38678259 38678305 -110838732 + T-rich Low_complexity Low_complexity 2 46 0 3 880 598 193 64 7 chr6 38678736 38678877 -110838160 - B1F SINE Alu 0 149 1 3 880 189 216 68 0 chr6 38678930 38678980 -110838057 + MIR SINE MIR 170 222 -46 4 880 458 47 31 0 chr6 38679075 38679139 -110837898 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 4 880 811 99 8 15 chr6 38679141 38679274 -110837763 + (TTTCC)n Simple_repeat Simple_repeat 3 134 0 4 880 1152 44 0 0 chr6 38679274 38679410 -110837627 - B1_Mus1 SINE Alu -12 136 1 4 880 358 287 18 9 chr6 38679560 38679669 -110837368 - MIR SINE MIR -57 151 42 4 880 794 209 87 6 chr6 38681306 38681489 -110835548 + ID_B1 SINE B4 1 198 -26 4 880 306 0 0 0 chr6 38681489 38681523 -110835514 + (CAA)n Simple_repeat Simple_repeat 2 35 0 4 880 311 228 35 71 chr6 38682377 38682462 -110834575 - ID4 SINE ID 0 83 2 4 880 633 210 0 46 chr6 38682991 38683121 -110833916 - B3 SINE B2 -4 212 89 4 880 590 144 10 10 chr6 38683598 38683696 -110833341 - B3 SINE B2 -116 100 3 4 880 3216 60 2 35 chr6 38683761 38684195 -110832842 + L1_Mus1 LINE L1 6148 6567 0 4 880 269 361 65 18 chr6 38685438 38685607 -110831430 + MIR SINE MIR 14 190 -72 4 880 203 156 0 43 chr6 38690690 38690737 -110826300 + CT-rich Low_complexity Low_complexity 5 49 0 4 880 898 202 35 25 chr6 38690886 38691089 -110825948 - B3 SINE B2 -11 205 1 4 880 675 276 62 15 chr6 38691128 38691323 -110825714 - B3 SINE B2 -12 204 1 4 880 352 314 95 13 chr6 38691353 38691511 -110825526 - B4A SINE B4 -119 173 3 4 880 1280 114 42 14 chr6 38691828 38692042 -110824995 - URR1A DNA MER1_type 0 226 7 4 880 344 250 36 18 chr6 38692928 38693038 -110823999 + MER58B DNA MER1_type 207 318 -23 4 880 443 276 9 0 chr6 38693572 38693688 -110823349 + L1MB2 LINE L1 6046 6162 -9 4 880 423 0 0 0 chr6 38693703 38693750 -110823287 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 880 806 157 17 11 chr6 38694024 38694198 -110822839 + CT-rich Low_complexity Low_complexity 3 177 0 4 880 969 269 80 49 chr6 38694496 38694949 -110822088 + MLT1C LTR MaLR 1 467 0 4 880 544 228 8 16 chr6 38695468 38695597 -110821440 - B1_Mm SINE Alu -13 134 7 4 880 233 321 14 54 chr6 38695597 38695616 -110821421 - ID_B1 SINE B4 -13 211 70 4 880 405 0 0 0 chr6 38696662 38696707 -110820330 + (CAAAC)n Simple_repeat Simple_repeat 1 45 0 4 880 333 0 0 0 chr6 38697685 38697722 -110819315 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 880 324 0 0 0 chr6 38697722 38697757 -110819280 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 880 388 256 0 13 chr6 38699401 38699480 -110817557 + ID4_ SINE ID 2 79 -4 4 880 842 267 108 3 chr6 38699496 38699782 -110817255 + MLT1C LTR MaLR 74 389 -78 4 880 312 293 36 84 chr6 38701455 38701511 -110815526 - B4 SINE B4 -48 244 86 4 880 461 198 144 0 chr6 38701511 38701622 -110815415 - B1_Mur1 SINE Alu -22 127 1 4 880 531 82 0 0 chr6 38701634 38701707 -110815330 + (TAA)n Simple_repeat Simple_repeat 3 75 0 4 880 308 338 59 46 chr6 38701873 38702025 -110815012 + RSINE1 SINE B4 4 157 -8 4 880 351 0 0 0 chr6 38702205 38702244 -110814793 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 880 244 198 134 67 chr6 38702351 38702478 -110814559 - L2a LINE L2 -14 3412 3229 4 880 258 32 0 0 chr6 38703690 38703721 -110813316 + (CCCTG)n Simple_repeat Simple_repeat 2 32 0 4 880 235 210 24 24 chr6 38705700 38705718 -110811319 + (CAAA)n Simple_repeat Simple_repeat 2 19 0 4 880 785 184 13 13 chr6 38705718 38705867 -110811170 + B1_Mur4 SINE Alu 1 149 -1 4 880 235 210 24 24 chr6 38705867 38705931 -110811106 + (CAAA)n Simple_repeat Simple_repeat 4 67 0 4 880 206 149 90 0 chr6 38706332 38706399 -110810638 + (TTAG)n Simple_repeat Simple_repeat 1 73 0 4 880 468 243 211 46 chr6 38706582 38706776 -110810261 + B4 SINE B4 59 284 -8 4 880 444 37 0 0 chr6 38706871 38706925 -110810112 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 880 261 0 0 0 chr6 38706925 38706953 -110810084 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 880 188 129 0 0 chr6 38707687 38707718 -110809319 + L2b LINE L2 3344 3374 -1 4 880 463 289 27 7 chr6 38710384 38710534 -110806503 + L1MA4 LINE L1 5735 5887 -413 4 880 1200 135 91 5 chr6 38712257 38712465 -110804572 + URR1A DNA MER1_type 1 226 0 4 880 22 0 0 0 chr6 38712488 38712510 -110804527 + AT_rich Low_complexity Low_complexity 1 22 0 4 880 639 307 102 15 chr6 38712720 38713175 -110803862 + MLT1F LTR MaLR 2 536 -12 4 880 696 145 24 0 chr6 38713599 38713723 -110803314 - B1_Mur4 SINE Alu 0 150 24 4 880 265 352 21 14 chr6 38713737 38713878 -110803159 + Charlie8 DNA MER1_type 88 229 -2199 4 880 433 245 54 9 chr6 38714109 38714220 -110802817 - B1F SINE Alu -29 120 5 4 880 180 340 184 0 chr6 38715014 38715117 -110801920 - L2a LINE L2 -5 3421 3300 4 880 518 227 11 185 chr6 38717690 38717879 -110799158 - ID_B1 SINE B4 -67 157 2 4 880 516 236 99 14 chr6 38718969 38719231 -110797806 - ORR1D2 LTR MaLR -20 350 12 4 880 273 57 0 0 chr6 38719690 38719725 -110797312 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 880 192 313 53 113 chr6 38721871 38722022 -110795015 - L3 LINE CR1 -261 4228 4087 4 880 185 362 73 12 chr6 38722451 38722616 -110794421 - L3 LINE CR1 -744 3745 3571 4 880 783 83 0 0 chr6 38724646 38724754 -110792283 + (CA)n Simple_repeat Simple_repeat 2 109 0 4 880 1081 181 98 60 chr6 38724852 38725221 -110791816 + RMER10A LTR ERVL 60 442 0 4 880 414 0 0 0 chr6 38725454 38725500 -110791537 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 880 2379 136 122 13 chr6 38725500 38725524 -110791513 + RMER5 LTR ERV1 17 40 -494 4 880 180 0 0 0 chr6 38725524 38725544 -110791493 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 4 880 2379 136 122 13 chr6 38725544 38725980 -110791057 + RMER5 LTR ERV1 41 526 -8 4 880 336 48 0 0 chr6 38726281 38726323 -110790714 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 880 420 82 0 0 chr6 38726340 38726401 -110790636 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 880 227 268 0 0 chr6 38726629 38726700 -110790337 + A-rich Low_complexity Low_complexity 1 71 0 4 880 575 110 0 29 chr6 38727466 38727569 -110789468 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 4 880 775 148 87 22 chr6 38727569 38727707 -110789330 - B1_Mur4 SINE Alu -1 149 3 4 880 497 114 257 0 chr6 38729596 38729701 -110787336 + B1_Mus1 SINE Alu 6 137 -11 4 880 817 83 8 0 chr6 38730408 38730528 -110786509 + B1_Mus2 SINE Alu 27 147 0 4 880 306 0 0 0 chr6 38730533 38730567 -110786470 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 880 732 227 6 94 chr6 38731035 38731215 -110785822 - RSINE1 SINE B4 0 165 2 4 880 1296 27 0 0 chr6 38731285 38731432 -110785605 + B1_Mus2 SINE Alu 1 147 0 4 880 190 329 22 76 chr6 38731471 38731563 -110785474 - L2a LINE L2 -36 3390 3304 4 880 1108 100 0 22 chr6 38731719 38731903 -110785134 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 880 458 183 19 0 chr6 38731906 38732010 -110785027 + GA-rich Low_complexity Low_complexity 3 108 0 4 880 225 0 0 0 chr6 38733111 38733136 -110783901 + (T)n Simple_repeat Simple_repeat 1 25 0 4 880 876 257 61 75 chr6 38733247 38733525 -110783512 - B4A SINE B4 -18 274 1 4 880 4203 35 0 0 chr6 38733564 38734048 -110782989 + L1Md_T LINE L1 6099 6582 0 4 880 194 337 84 0 chr6 38734839 38734934 -110782103 - MIRm SINE MIR -8 268 166 4 880 671 83 229 16 chr6 38736188 38736310 -110780727 - B1_Mus1 SINE Alu 0 148 1 4 880 186 148 48 36 chr6 38738288 38738372 -110778665 + GA-rich Low_complexity Low_complexity 2 86 0 4 880 538 266 483 13 chr6 38740101 38740474 -110776563 - MLT1F LTR MaLR 0 548 1 4 880 289 228 169 69 chr6 38740730 38740890 -110776147 - L1MB3 LINE L1 -70 6113 5938 4 880 300 154 0 0 chr6 38741033 38741085 -110775952 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 880 383 235 57 65 chr6 38741087 38741129 -110775908 - L1MB3 LINE L1 -369 5802 5763 4 880 1382 95 16 5 chr6 38741129 38741320 -110775717 - B2_Mm2 SINE B2 -2 193 1 4 880 383 235 57 65 chr6 38741320 38741400 -110775637 - L1MB3 LINE L1 -409 5762 5681 4 880 588 239 108 122 chr6 38741579 38741875 -110775162 + B4A SINE B4 1 292 0 4 880 343 289 8 50 chr6 38742047 38742167 -110774870 + PB1D10 SINE Alu 3 117 0 4 880 29 28 0 0 chr6 38745757 38745793 -110771244 + AT_rich Low_complexity Low_complexity 1 36 0 4 880 252 0 0 0 chr6 38748947 38748975 -110768062 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 880 890 303 32 18 chr6 38749009 38749291 -110767746 + B4A SINE B4 7 292 0 4 880 871 156 0 36 chr6 38749351 38749491 -110767546 - B1_Mur3 SINE Alu -12 137 3 4 880 184 255 39 0 chr6 38749681 38749732 -110767305 + L2b LINE L2 3322 3374 -1 4 880 1339 261 72 93 chr6 38750589 38751232 -110765805 - L1MB5 LINE L1 -11 6163 5535 4 880 720 0 0 0 chr6 38751793 38751873 -110765164 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 880 1642 219 19 35 chr6 38754181 38754555 -110762482 + MTD LTR MaLR 13 380 -39 4 880 630 157 0 0 chr6 38754571 38754673 -110762364 - B1_Mus2 SINE Alu -17 130 29 4 880 395 315 78 26 chr6 38757021 38757174 -110759863 - MIRb SINE MIR -62 206 46 4 880 477 0 0 0 chr6 38757599 38757652 -110759385 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 880 279 0 0 0 chr6 38758189 38758220 -110758817 + (T)n Simple_repeat Simple_repeat 1 31 0 4 880 1179 75 0 0 chr6 38758223 38758370 -110758667 - B1_Mus2 SINE Alu 0 147 1 4 880 311 235 29 58 chr6 38758788 38758892 -110758145 + LTR16E1 LTR ERVL 435 535 -3 4 880 2528 117 70 23 chr6 38759604 38760076 -110756961 + RLTR26 LTR ERVK 149 642 0 4 880 383 280 85 0 chr6 38760456 38760574 -110756463 + B1F SINE Alu 14 141 -8 5 880 1062 98 0 0 chr6 38760696 38760849 -110756188 + (GGA)n Simple_repeat Simple_repeat 2 154 0 5 880 192 299 121 20 chr6 38762769 38762868 -110754169 + L2c LINE L2 3273 3381 -6 5 880 331 295 162 61 chr6 38763171 38763319 -110753718 - RSINE1 SINE B4 0 165 3 5 880 264 30 0 0 chr6 38763744 38763777 -110753260 + (TAGGG)n Simple_repeat Simple_repeat 1 33 0 5 880 27 0 0 0 chr6 38766632 38766659 -110750378 + AT_rich Low_complexity Low_complexity 1 27 0 5 880 432 0 0 0 chr6 38767528 38767576 -110749461 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 880 841 225 44 17 chr6 38767898 38768108 -110748929 - B3 SINE B2 -1 194 1 5 880 472 300 98 55 chr6 38769416 38769670 -110747367 + B4 SINE B4 2 266 -26 5 880 858 269 24 61 chr6 38770328 38770625 -110746412 + B4A SINE B4 1 286 -6 5 880 965 227 121 4 chr6 38770909 38771157 -110745880 - B4A SINE B4 -15 277 1 5 880 312 277 71 0 chr6 38771706 38771818 -110745219 + L2 LINE L2 1985 2104 -1315 5 880 226 423 10 0 chr6 38772794 38772898 -110744139 + PB1D10 SINE Alu 3 107 -10 5 880 1203 41 0 7 chr6 38772899 38773045 -110743992 + B1_Mus2 SINE Alu 3 147 0 5 880 363 121 0 0 chr6 38773046 38773104 -110743933 + (GGA)n Simple_repeat Simple_repeat 3 60 0 5 880 183 114 0 0 chr6 38773351 38773386 -110743651 + (TATG)n Simple_repeat Simple_repeat 4 38 0 5 880 292 325 25 42 chr6 38775795 38775914 -110741123 - PB1D10 SINE Alu 0 117 1 5 880 677 113 217 0 chr6 38776567 38776682 -110740355 + B1_Mur3 SINE Alu 2 141 -8 5 880 365 236 89 18 chr6 38777232 38777344 -110739693 + B1_Mm SINE Alu 1 120 0 5 880 214 374 44 0 chr6 38777952 38778043 -110738994 - MIRb SINE MIR -143 125 31 5 880 399 73 0 0 chr6 38778843 38778898 -110738139 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 880 725 258 196 0 chr6 38778898 38779123 -110737914 - B4A SINE B4 -23 269 1 5 880 300 255 138 0 chr6 38780439 38780533 -110736504 - PB1D7 SINE Alu -10 110 4 5 880 3255 46 2 8 chr6 38780593 38780989 -110736048 - MTA_Mm LTR MaLR -2 394 1 5 880 495 266 178 99 chr6 38780992 38781396 -110735641 - MLT1C LTR MaLR -21 446 11 5 880 315 0 0 0 chr6 38781469 38781504 -110735533 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 5 880 1001 274 28 47 chr6 38782259 38782622 -110734415 + MLT1B LTR MaLR 35 390 0 5 880 730 195 0 0 chr6 38783476 38783604 -110733433 + B1_Mus1 SINE Alu 1 128 -20 5 880 234 329 147 0 chr6 38784116 38784259 -110732778 + MIRb SINE MIR 88 251 -17 5 880 39 22 0 0 chr6 38784527 38784573 -110732464 + AT_rich Low_complexity Low_complexity 1 46 0 5 880 3336 50 9 2 chr6 38785714 38786136 -110730901 - L1_Mus3 LINE L1 0 6638 6214 5 880 300 138 0 65 chr6 38786143 38786205 -110730832 + 4.5SRNA scRNA scRNA 35 92 -2 5 880 818 183 121 11 chr6 38787402 38787584 -110729453 + B3 SINE B2 2 203 -13 5 880 1331 203 116 91 chr6 38787626 38788142 -110728895 + RLTR20A LTR ERVK 13 541 0 5 880 1570 270 108 6 chr6 38789771 38790318 -110726719 - L1MB7 LINE L1 -20 6164 5562 5 880 278 293 71 71 chr6 38791699 38791868 -110725169 - MIRb SINE MIR -71 197 29 5 880 296 236 181 31 chr6 38792225 38792352 -110724685 + MER103 DNA DNA 9 154 -12 5 880 1132 49 0 0 chr6 38792633 38792777 -110724260 + B2_Mm2 SINE B2 2 145 -50 5 880 521 226 72 17 chr6 38793770 38793950 -110723087 + L1MB7 LINE L1 5258 5447 -727 5 880 732 264 156 28 chr6 38793947 38794364 -110722673 + L1MB7 LINE L1 5650 6167 -17 5 880 1063 93 22 28 chr6 38794369 38794549 -110722488 + B2_Mm2 SINE B2 6 193 -2 5 880 338 380 51 0 chr6 38794572 38794730 -110722307 + Tigger7 DNA MER2_type 1 166 -2325 5 880 616 217 151 28 chr6 38794893 38795111 -110721926 + Tigger7 DNA MER2_type 2247 2490 -1 5 880 207 306 89 94 chr6 38795113 38795326 -110721711 - MIRb SINE MIR -53 215 4 5 881 254 241 0 0 chr6 38797690 38797744 -110719293 + MER3 DNA MER1_type 37 90 -119 5 881 328 189 147 53 chr6 38797932 38798027 -110719010 + PB1D10 SINE Alu 1 104 -13 5 881 2231 204 22 13 chr6 38798332 38798794 -110718243 - MLT1C LTR MaLR -1 466 1 5 881 1195 166 34 0 chr6 38800814 38801019 -110716018 - B3 SINE B2 -4 212 1 5 881 192 217 0 0 chr6 38801760 38801806 -110715231 + GA-rich Low_complexity Low_complexity 3 48 0 5 881 581 248 19 58 chr6 38801924 38802078 -110714959 - B1_Mur1 SINE Alu 0 149 2 5 881 309 347 50 25 chr6 38805075 38805196 -110711841 + MLT1L LTR MaLR 250 373 -237 5 881 189 0 0 0 chr6 38805223 38805244 -110711793 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 881 1173 129 64 0 chr6 38805244 38805415 -110711622 - B2_Mm2 SINE B2 -12 183 2 5 881 601 189 43 50 chr6 38805450 38805589 -110711448 + B1_Mur1 SINE Alu 2 139 -10 5 881 312 91 0 0 chr6 38805589 38805633 -110711404 + (CAT)n Simple_repeat Simple_repeat 2 45 0 5 881 311 243 99 83 chr6 38805640 38805761 -110711276 - RSINE1 SINE B4 0 165 43 5 881 227 274 75 25 chr6 38805801 38805921 -110711116 + MLT1L LTR MaLR 483 608 -2 5 881 22 0 0 0 chr6 38806611 38806633 -110710404 + AT_rich Low_complexity Low_complexity 1 22 0 5 881 654 250 56 0 chr6 38806792 38806952 -110710085 - B3A SINE B2 0 198 30 5 881 478 167 0 12 chr6 38806944 38807029 -110710008 - B1_Mus1 SINE Alu -64 84 1 5 881 225 286 0 0 chr6 38807557 38807613 -110709424 - MIRm SINE MIR 0 276 221 5 881 1078 223 115 31 chr6 38807728 38808085 -110708952 + L1MB8 LINE L1 5791 6177 -1 5 881 274 312 32 75 chr6 38808274 38808461 -110708576 + L1M5 LINE L1 4560 4738 -1408 5 881 312 306 66 35 chr6 38808861 38809149 -110707888 + L1MC LINE L1 5265 5561 -2321 5 881 182 264 40 27 chr6 38810462 38810536 -110706501 - L2c LINE L2 -223 3164 3090 5 881 650 184 57 29 chr6 38810810 38810950 -110706087 + B1_Mur2 SINE Alu 6 149 0 5 881 402 147 0 0 chr6 38810966 38811034 -110706003 + (GGA)n Simple_repeat Simple_repeat 3 70 0 5 881 640 271 136 12 chr6 38811070 38811328 -110705709 + B4A SINE B4 3 292 0 5 881 342 0 0 0 chr6 38811331 38811369 -110705668 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 881 269 215 30 15 chr6 38811499 38811565 -110705472 + MER58C DNA MER1_type 147 213 -2 5 881 705 328 30 34 chr6 38811606 38811903 -110705134 - MER82 DNA MER2_type 0 653 358 5 881 260 328 20 77 chr6 38811919 38811965 -110705072 - MER82 DNA MER2_type -251 402 362 5 881 1119 74 0 7 chr6 38811965 38812114 -110704923 - B1_Mus1 SINE Alu 0 148 1 5 881 260 328 20 77 chr6 38812114 38812262 -110704775 - MER82 DNA MER2_type -292 361 219 5 881 452 301 38 19 chr6 38812262 38812421 -110704616 + RSINE1 SINE B4 4 165 0 5 881 243 218 0 0 chr6 38812421 38812476 -110704561 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 881 509 250 42 21 chr6 38812668 38812811 -110704226 - MER82 DNA MER2_type -501 152 7 5 881 209 341 113 23 chr6 38812977 38813063 -110703974 - L2c LINE L2 -948 2471 2377 5 881 213 39 0 0 chr6 38813063 38813089 -110703948 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 5 881 209 341 113 23 chr6 38813089 38813179 -110703858 - L2c LINE L2 -1043 2376 2281 5 881 333 0 0 0 chr6 38813600 38813637 -110703400 + (A)n Simple_repeat Simple_repeat 1 37 0 5 881 219 244 71 71 chr6 38813685 38813769 -110703268 + L2a LINE L2 3333 3416 -10 5 881 287 238 16 0 chr6 38813952 38814015 -110703022 + ID4 SINE ID 4 67 -16 5 881 222 278 0 0 chr6 38814027 38814081 -110702956 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 881 870 45 0 0 chr6 38814083 38814194 -110702843 + (TC)n Simple_repeat Simple_repeat 1 111 0 5 881 509 223 92 8 chr6 38814196 38814327 -110702710 + B1F SINE Alu 8 149 0 5 881 291 323 60 12 chr6 38815029 38815172 -110701865 + MIRb SINE MIR 6 153 -115 5 881 318 206 152 0 chr6 38815529 38815621 -110701416 + MER5A DNA MER1_type 60 165 -24 5 881 288 297 8 25 chr6 38817963 38818084 -110698953 - Tigger15a DNA TcMar -130 585 467 5 881 412 299 191 25 chr6 38818757 38819282 -110697755 - Tigger10 DNA Tigger -1040 803 192 5 881 705 212 8 0 chr6 38819480 38819612 -110697425 + B1_Mur1 SINE Alu 4 136 -13 5 881 234 0 0 0 chr6 38819612 38819638 -110697399 + (T)n Simple_repeat Simple_repeat 1 26 0 5 881 239 265 10 144 chr6 38819725 38819822 -110697215 - L2c LINE L2 -13 3374 3291 5 881 1175 35 21 0 chr6 38820746 38820891 -110696146 + B1_Mus1 SINE Alu 1 148 0 5 881 241 322 8 92 chr6 38821180 38821310 -110695727 + L2b LINE L2 3261 3384 -3 5 881 272 236 44 11 chr6 38822950 38823040 -110693997 + MamRep434 DNA TcMar 76 168 -258 5 881 180 0 0 0 chr6 38825323 38825343 -110691694 + (CCA)n Simple_repeat Simple_repeat 2 21 0 5 881 25 65 0 0 chr6 38825684 38825730 -110691307 + GC_rich Low_complexity Low_complexity 1 46 0 5 881 253 169 60 60 chr6 38825970 38826002 -110691035 + (CCGGG)n Simple_repeat Simple_repeat 4 36 0 5 881 225 108 0 0 chr6 38826002 38826039 -110690998 + (CCG)n Simple_repeat Simple_repeat 2 38 0 5 881 253 169 60 60 chr6 38826039 38826157 -110690880 + (CCGGG)n Simple_repeat Simple_repeat 2 119 0 5 881 273 261 0 77 chr6 38826099 38826269 -110690768 + G-rich Low_complexity Low_complexity 4 160 0 5 881 244 189 67 13 chr6 38826216 38826291 -110690746 + (CGGG)n Simple_repeat Simple_repeat 2 80 0 5 881 206 232 0 69 chr6 38826339 38826441 -110690596 + (CGGGG)n Simple_repeat Simple_repeat 2 96 0 5 881 200 310 80 11 chr6 38827505 38827593 -110689444 - MIR3 SINE MIR -33 175 82 5 881 248 358 0 0 chr6 38828056 38828151 -110688886 + MIRm SINE MIR 47 141 -135 5 881 279 150 305 48 chr6 38828290 38828395 -110688642 + MER3 DNA MER1_type 77 208 -1 5 881 201 384 23 0 chr6 38828401 38828487 -110688550 + L2b LINE L2 3257 3344 -31 5 881 243 0 0 0 chr6 38828555 38828582 -110688455 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 881 426 196 0 0 chr6 38829422 38829524 -110687513 + (CAGG)n Simple_repeat Simple_repeat 3 104 0 6 881 318 258 22 0 chr6 38829734 38829823 -110687214 - B3 SINE B2 0 216 126 6 881 1090 132 31 11 chr6 38829827 38830018 -110687019 + MTC LTR MaLR 1 195 -226 6 881 590 238 32 0 chr6 38830176 38830297 -110686740 + B3 SINE B2 2 126 -90 6 881 1887 135 20 42 chr6 38830297 38830654 -110686383 - MTC LTR MaLR 0 421 73 6 881 648 260 90 33 chr6 38830861 38831072 -110685965 + B4 SINE B4 2 224 -68 6 881 232 281 0 0 chr6 38831079 38831136 -110685901 + GA-rich Low_complexity Low_complexity 1 57 0 6 881 270 243 25 75 chr6 38831144 38831224 -110685813 + B4 SINE B4 217 292 0 6 881 201 298 12 12 chr6 38831288 38831373 -110685664 + CT-rich Low_complexity Low_complexity 1 85 0 6 881 378 0 0 0 chr6 38832482 38832524 -110684513 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 881 315 0 0 0 chr6 38832524 38832558 -110684479 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 881 232 357 36 46 chr6 38832930 38833124 -110683913 - L2 LINE L2 -905 2514 2323 6 881 262 388 37 7 chr6 38833197 38833332 -110683705 + MER5A DNA MER1_type 4 142 -47 6 881 315 275 247 57 chr6 38834239 38834397 -110682640 + MIRc SINE MIR 69 256 -12 6 881 21 0 0 0 chr6 38835119 38835140 -110681897 + AT_rich Low_complexity Low_complexity 1 21 0 6 881 375 23 0 0 chr6 38835417 38835461 -110681576 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 881 322 27 0 0 chr6 38835475 38835512 -110681525 + HAL1-3A_ME LINE L1 1974 2010 -848 6 881 324 0 0 0 chr6 38835512 38835548 -110681489 + (CCA)n Simple_repeat Simple_repeat 3 38 0 6 881 236 338 0 13 chr6 38835668 38835743 -110681294 + tRNA-Ala-GCY_ tRNA tRNA 2 75 0 6 881 297 300 0 24 chr6 38835768 38835850 -110681187 + B1F1 SINE Alu 70 149 0 6 881 310 269 179 19 chr6 38836129 38836235 -110680802 - ID_B1 SINE B4 0 224 102 6 881 512 286 54 20 chr6 38836236 38836472 -110680565 - Charlie4a DNA MER1_type -68 440 158 6 881 578 252 38 0 chr6 38836730 38836861 -110680176 + B1F1 SINE Alu 13 148 -1 6 881 402 39 0 0 chr6 38836888 38836940 -110680097 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 881 1420 49 27 0 chr6 38836950 38837134 -110679903 - B2_Mm1t SINE B2 -3 190 2 6 881 184 282 75 75 chr6 38837146 38837280 -110679757 + L2a LINE L2 3220 3353 -73 6 881 24 32 0 0 chr6 38837374 38837405 -110679632 + AT_rich Low_complexity Low_complexity 1 31 0 6 881 399 183 14 14 chr6 38838344 38838416 -110678621 - B4 SINE B4 -25 267 196 6 881 520 214 42 83 chr6 38838477 38838645 -110678392 - RSINE1 SINE B4 0 165 5 6 881 481 208 39 19 chr6 38838647 38838750 -110678287 - MER2 DNA MER2_type -119 226 122 6 881 235 316 0 0 chr6 38839052 38839132 -110677905 + polypyrimidine Low_complexity Low_complexity 1 80 0 6 881 438 246 55 0 chr6 38839135 38839245 -110677792 - PB1D10 SINE Alu 0 117 2 6 881 207 0 0 0 chr6 38839971 38839994 -110677043 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 881 1174 274 166 41 chr6 38840006 38840217 -110676820 - Lx8 LINE L1 -5 7468 7233 6 881 324 0 0 0 chr6 38840217 38840253 -110676784 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 881 1174 274 166 41 chr6 38840253 38840597 -110676440 - Lx8 LINE L1 -241 7232 6844 6 881 1201 74 0 30 chr6 38840598 38840766 -110676271 + B2_Mm2 SINE B2 2 164 -31 6 881 306 0 0 0 chr6 38840769 38840803 -110676234 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 881 544 260 0 40 chr6 38840803 38840955 -110676082 - Lx8 LINE L1 -625 6848 6703 6 881 444 226 91 50 chr6 38841529 38841650 -110675387 + B1F SINE Alu 16 141 -8 6 881 506 322 64 6 chr6 38842066 38842238 -110674799 - MLT1J2 LTR MaLR -197 251 70 6 881 593 212 57 8 chr6 38842596 38842727 -110674310 + B1_Mur1 SINE Alu 5 140 -10 6 881 266 0 29 0 chr6 38842727 38842761 -110674276 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 881 423 0 0 0 chr6 38842899 38842946 -110674091 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 881 492 18 0 0 chr6 38843144 38843201 -110673836 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 881 727 308 14 22 chr6 38843528 38843727 -110673310 + ID_B1 SINE B4 50 242 -50 6 881 471 261 112 70 chr6 38843720 38843934 -110673103 + B4 SINE B4 5 227 -65 6 881 999 151 45 0 chr6 38843938 38844117 -110672920 + B2_Mm2 SINE B2 2 188 -7 6 881 1272 251 62 58 chr6 38844227 38844757 -110672280 + L1MC2 LINE L1 5785 6316 -28 6 881 311 336 3 33 chr6 38844813 38844915 -110672122 + B1F SINE Alu 1 102 -18 6 881 884 114 0 7 chr6 38844925 38845066 -110671971 + (GAA)n Simple_repeat Simple_repeat 3 142 0 6 881 352 276 106 7 chr6 38845406 38845548 -110671489 - RSINE1 SINE B4 -8 157 2 6 881 681 293 5 95 chr6 38845563 38845763 -110671274 - ID_B1 SINE B4 -42 182 1 6 881 567 160 36 36 chr6 38845857 38845967 -110671070 - B1_Mur3 SINE Alu 0 149 40 6 881 222 268 0 0 chr6 38845968 38846024 -110671013 + CT-rich Low_complexity Low_complexity 4 59 0 6 881 337 204 0 0 chr6 38846024 38846078 -110670959 - B1_Mur4 SINE Alu -95 55 2 6 881 733 319 99 32 chr6 38846277 38846591 -110670446 + MER2 DNA MER2_type 10 344 -1 6 881 378 0 0 0 chr6 38847444 38847486 -110669551 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 881 240 270 84 34 chr6 38847610 38847729 -110669308 + Tigger10 DNA Tigger 87 211 -1632 6 881 1024 105 0 0 chr6 38847830 38847973 -110669064 - B1_Mus2 SINE Alu 0 147 5 6 881 240 163 0 0 chr6 38848055 38848098 -110668939 + A-rich Low_complexity Low_complexity 1 43 0 6 881 1110 138 122 0 chr6 38848153 38848349 -110668688 - URR1B DNA MER1_type 0 225 6 6 881 660 150 0 0 chr6 38848410 38848523 -110668514 + CT-rich Low_complexity Low_complexity 3 115 0 6 881 417 253 0 0 chr6 38848526 38848605 -110668432 - ID4 SINE ID -3 80 2 6 881 424 160 37 83 chr6 38848621 38848730 -110668307 - PB1 SINE Alu -2 125 22 6 881 272 364 147 18 chr6 38849315 38849539 -110667498 + L2 LINE L2 2661 2913 -506 6 881 206 219 0 0 chr6 38850129 38850170 -110666867 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 881 629 277 71 18 chr6 38850173 38850342 -110666695 - B3A SINE B2 -18 180 3 6 881 481 250 0 74 chr6 38850504 38850625 -110666412 + B4A SINE B4 107 218 -74 6 881 931 226 159 80 chr6 38851542 38851893 -110665144 + MTEa LTR MaLR 1 379 0 6 881 913 267 79 57 chr6 38851911 38852264 -110664773 - MER63D DNA AcHobo -669 392 32 6 881 1092 295 66 57 chr6 38852758 38852799 -110664238 - MLT2B3 LTR ERVL 0 554 517 6 881 192 77 0 0 chr6 38852799 38852825 -110664212 + (TGGG)n Simple_repeat Simple_repeat 3 28 0 6 881 1092 295 66 57 chr6 38852825 38853332 -110663705 - MLT2B3 LTR ERVL -38 516 1 6 881 636 261 35 0 chr6 38854368 38854510 -110662527 + RSINE1 SINE B4 3 149 -16 6 881 859 276 75 15 chr6 38854723 38854988 -110662049 - B4A SINE B4 -6 286 6 6 881 581 258 8 0 chr6 38854998 38855122 -110661915 - ID_B1 SINE B4 -2 222 98 6 881 362 305 0 31 chr6 38855370 38855468 -110661569 + B3A SINE B2 8 102 -96 6 881 288 0 0 0 chr6 38855498 38855530 -110661507 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 881 878 260 11 112 chr6 38856437 38856697 -110660340 + B4 SINE B4 55 288 -4 6 881 480 77 0 0 chr6 38856737 38856802 -110660235 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 881 1237 54 0 0 chr6 38856870 38857017 -110660020 - B1_Mus2 SINE Alu 0 147 1 6 881 394 253 0 44 chr6 38857432 38857523 -110659514 + PB1D10 SINE Alu 31 117 0 6 881 953 138 21 0 chr6 38857537 38857682 -110659355 + B1_Mur2 SINE Alu 2 149 0 6 881 252 0 0 0 chr6 38857693 38857721 -110659316 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 6 881 474 174 61 10 chr6 38859843 38859942 -110657095 + MER5A DNA MER1_type 23 126 -63 6 881 444 292 31 93 chr6 38860039 38860201 -110656836 + B4A SINE B4 1 152 -140 6 881 345 24 0 0 chr6 38861757 38861799 -110655238 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 881 277 238 32 0 chr6 38861803 38861866 -110655171 - tRNA-Ala-GCY_ tRNA tRNA -8 67 3 6 881 713 363 95 11 chr6 38862262 38862632 -110654405 + MLT1J2 LTR MaLR 42 442 -6 6 881 227 264 19 0 chr6 38863427 38863480 -110653557 + L2 LINE L2 2827 2880 -539 6 881 214 388 11 56 chr6 38863974 38864154 -110652883 - L2 LINE L2 -912 2507 2336 6 881 351 0 0 0 chr6 38864900 38864939 -110652098 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 881 217 180 0 39 chr6 38864939 38864985 -110652052 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 881 1073 303 0 18 chr6 38864992 38865268 -110651769 - B4 SINE B4 -5 287 17 6 881 1638 194 112 23 chr6 38866778 38867163 -110649874 - MTD LTR MaLR 0 419 1 6 881 228 289 50 20 chr6 38867372 38867471 -110649566 + MIRc SINE MIR 42 143 -125 6 881 346 257 57 32 chr6 38867559 38867716 -110649321 - MER103 DNA DNA -2 164 4 6 881 225 306 0 0 chr6 38870093 38870155 -110646882 + MIRc SINE MIR 204 265 -3 6 881 629 189 95 130 chr6 38870643 38870858 -110646179 + ID_B1 SINE B4 2 212 -12 6 881 594 0 0 0 chr6 38870858 38870924 -110646113 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 881 629 189 95 130 chr6 38870924 38870939 -110646098 + ID_B1 SINE B4 213 224 0 6 881 259 356 0 0 chr6 38871086 38871173 -110645864 + L2b LINE L2 3289 3375 0 6 881 657 270 34 11 chr6 38871971 38872059 -110644978 + RMER30 DNA MER1_type 7 98 -104 6 881 360 0 0 0 chr6 38872059 38872099 -110644938 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 881 657 270 34 11 chr6 38872099 38872186 -110644851 + RMER30 DNA MER1_type 99 185 -17 6 881 258 32 0 0 chr6 38873232 38873263 -110643774 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 881 272 296 538 6 chr6 38873273 38873433 -110643604 - B4A SINE B4 -47 245 1 7 881 236 310 0 14 chr6 38873457 38873529 -110643508 + ID4 SINE ID 5 75 -8 7 881 188 0 0 69 chr6 38873818 38873847 -110643190 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 7 881 364 298 37 74 chr6 38874383 38874546 -110642491 + MER2B DNA MER2_type 1 157 -179 7 881 629 325 39 12 chr6 38874665 38874923 -110642114 + MER2 DNA MER2_type 81 345 0 7 881 334 280 109 10 chr6 38875059 38875160 -110641877 - MER103 DNA DNA -45 121 11 7 881 252 0 0 0 chr6 38875828 38875856 -110641181 + (A)n Simple_repeat Simple_repeat 1 28 0 7 881 915 215 31 0 chr6 38875861 38876056 -110640981 - B3 SINE B2 -15 201 1 7 881 894 19 0 0 chr6 38876085 38876189 -110640848 + (TC)n Simple_repeat Simple_repeat 2 105 0 7 881 354 62 21 0 chr6 38876189 38876237 -110640800 - B1_Mur1 SINE Alu -6 143 95 7 881 230 286 70 23 chr6 38876347 38876433 -110640604 - ID_B1 SINE B4 -51 173 84 7 881 274 250 59 0 chr6 38876366 38876434 -110640603 - B1F2 SINE Alu -76 73 2 7 881 577 258 179 21 chr6 38876454 38876644 -110640393 - ID_B1 SINE B4 -3 221 2 7 881 431 270 29 21 chr6 38877129 38877269 -110639768 + MARNA DNA Mariner 11 151 -435 7 881 530 67 0 13 chr6 38877587 38877663 -110639374 + (TC)n Simple_repeat Simple_repeat 1 75 0 7 881 360 0 0 0 chr6 38877664 38877704 -110639333 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 881 735 267 86 32 chr6 38877751 38877937 -110639100 - B3A SINE B2 0 198 3 7 881 603 293 84 67 chr6 38879043 38879401 -110637636 - Charlie19a DNA Charlie -22 364 1 7 881 214 302 94 0 chr6 38880722 38880828 -110636209 + MIR SINE MIR 11 126 -136 7 881 672 13 0 0 chr6 38880846 38880923 -110636114 + (TC)n Simple_repeat Simple_repeat 2 78 0 7 881 1557 152 64 27 chr6 38881513 38881810 -110635227 - MTD LTR MaLR -12 407 100 7 881 1328 208 20 76 chr6 38881795 38882138 -110634899 - ORR1D2-int LTR MaLR -934 324 1 7 881 1094 241 122 28 chr6 38882138 38882482 -110634555 - ORR1D2 LTR MaLR 0 370 13 7 881 271 152 22 0 chr6 38882723 38882769 -110634268 - MLT1H LTR MaLR 0 549 503 7 881 219 284 36 30 chr6 38884086 38884253 -110632784 + (CA)n Simple_repeat Simple_repeat 1 168 0 7 881 392 201 42 42 chr6 38884188 38884354 -110632683 + (CATATA)n Simple_repeat Simple_repeat 5 170 0 7 881 237 252 42 61 chr6 38884271 38884373 -110632664 + (CA)n Simple_repeat Simple_repeat 1 99 0 7 881 3105 53 24 0 chr6 38884373 38884749 -110632288 - IAPEY_LTR LTR ERVK 0 385 1 7 881 237 252 42 61 chr6 38884749 38884811 -110632226 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 881 645 275 138 97 chr6 38884907 38885342 -110631695 + MLT1C LTR MaLR 6 458 -9 7 881 690 221 28 14 chr6 38885524 38885666 -110631371 + B1F SINE Alu 6 149 0 7 881 316 328 74 63 chr6 38886081 38886270 -110630767 + MLT1F1 LTR MaLR 20 210 -338 7 881 344 256 66 29 chr6 38886350 38886487 -110630550 + MLT1F1 LTR MaLR 428 569 0 7 881 661 121 0 48 chr6 38886739 38886843 -110630194 - B1_Mur2 SINE Alu -30 119 21 7 881 512 257 21 49 chr6 38887194 38887368 -110629669 + MIR SINE MIR 3 171 -91 7 881 288 294 65 11 chr6 38887874 38887967 -110629070 + MER96 DNA hAT 78 175 0 7 881 237 273 38 38 chr6 38888711 38888791 -110628246 - L3 LINE CR1 -641 3848 3769 7 881 782 177 146 22 chr6 38889539 38889724 -110627313 + B3 SINE B2 1 208 -8 7 881 387 202 0 0 chr6 38889761 38889855 -110627182 + (TG)n Simple_repeat Simple_repeat 1 94 0 7 881 718 228 32 32 chr6 38889948 38890102 -110626935 + RMER30 DNA MER1_type 8 161 -41 7 881 198 0 0 0 chr6 38891573 38891595 -110625442 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 7 881 300 27 0 0 chr6 38891655 38891692 -110625345 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 881 261 0 0 0 chr6 38891692 38891720 -110625317 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 881 1038 85 0 0 chr6 38891942 38892083 -110624954 - B1_Mur3 SINE Alu 0 149 9 7 881 395 146 11 58 chr6 38892187 38892274 -110624763 - L1MC5 LINE L1 -999 6962 6880 7 881 1171 109 62 2 chr6 38892661 38892842 -110624195 - RLTR11A2 LTR ERVK -345 182 3 7 881 303 302 35 70 chr6 38892842 38892955 -110624082 - MTEa LTR MaLR -259 120 12 7 881 1631 214 40 14 chr6 38892981 38893331 -110623706 - ORR1D2 LTR MaLR -10 360 2 7 881 199 369 125 36 chr6 38893515 38893908 -110623129 - L2 LINE L2 -1275 2144 1717 7 881 690 263 102 15 chr6 38894025 38894222 -110622815 + ID_B1 SINE B4 2 215 -9 7 881 270 364 40 23 chr6 38894247 38894424 -110622613 - Charlie24 DNA MER1_type -1766 684 505 7 881 933 275 57 59 chr6 38894435 38894822 -110622215 - Charlie24 DNA MER1_type -2007 443 58 7 881 613 294 70 0 chr6 38894901 38895101 -110621936 - MLT1C LTR MaLR -80 387 174 7 881 853 227 17 37 chr6 38895101 38895365 -110621672 + ORR1E LTR MaLR 1 341 -38 7 881 425 299 0 0 chr6 38895396 38895503 -110621534 - MLT1C LTR MaLR -291 176 70 7 881 32 26 0 0 chr6 38896349 38896388 -110620649 + AT_rich Low_complexity Low_complexity 1 39 0 7 881 4335 69 11 3 chr6 38896480 38897044 -110619993 - L1_Mus3 LINE L1 -2 6636 6069 7 881 2312 87 12 15 chr6 38897848 38898176 -110618861 + ORR1A2 LTR MaLR 1 327 0 7 881 210 216 0 0 chr6 38898761 38898798 -110618239 + polypyrimidine Low_complexity Low_complexity 1 37 0 7 881 1045 187 76 0 chr6 38898798 38898996 -110618041 - ID_B1 SINE B4 -8 216 4 7 881 312 27 0 0 chr6 38899040 38899077 -110617960 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 7 881 293 208 99 0 chr6 38900704 38900805 -110616232 - Lx9 LINE L1 -3 7641 7531 7 881 730 235 18 0 chr6 38900819 38900989 -110616048 - Lx9 LINE L1 -173 7471 7299 7 881 301 319 33 41 chr6 38902156 38902277 -110614760 - MER94 DNA AcHobo -13 121 2 7 881 1004 217 19 0 chr6 38902326 38902538 -110614499 - B3 SINE B2 0 216 1 7 881 270 0 0 0 chr6 38903831 38903861 -110613176 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 881 528 303 0 0 chr6 38904722 38904897 -110612140 + (CACCAT)n Simple_repeat Simple_repeat 3 177 0 7 881 275 333 135 26 chr6 38905899 38906321 -110610716 - L1MC LINE L1 -2154 5728 5261 7 881 272 298 65 97 chr6 38906359 38906545 -110610492 + MTEb LTR MaLR 55 234 -125 7 881 274 347 20 0 chr6 38906586 38906684 -110610353 + MTEb LTR MaLR 278 377 -2 7 881 468 152 0 0 chr6 38907535 38907634 -110609403 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 881 2065 198 29 10 chr6 38907977 38908386 -110608651 + MTD LTR MaLR 3 419 0 7 881 270 132 0 0 chr6 38908966 38909019 -110608018 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 881 436 257 104 64 chr6 38909127 38909265 -110607772 - L1MA4 LINE L1 -376 5924 5772 7 881 384 22 0 0 chr6 38909265 38909310 -110607727 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 881 336 24 0 0 chr6 38909310 38909350 -110607687 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 881 436 255 104 65 chr6 38909350 38909442 -110607595 - L1MA4 LINE L1 -506 5794 5680 7 881 231 329 19 106 chr6 38909672 38909832 -110607205 - Charlie9 DNA MER1_type 0 2757 2612 7 881 1408 213 152 4 chr6 38909916 38910282 -110606755 - MTD LTR MaLR -21 398 1 7 881 615 14 0 0 chr6 38910405 38910477 -110606560 + (GA)n Simple_repeat Simple_repeat 2 73 0 7 881 269 364 27 18 chr6 38912154 38912182 -110604855 + B4 SINE B4 60 88 -204 7 881 402 302 0 11 chr6 38912182 38912269 -110604768 + PB1D10 SINE Alu 3 88 -29 7 881 274 277 39 87 chr6 38912269 38912284 -110604753 + MT2B LTR ERVL 167 263 -338 7 881 452 312 209 31 chr6 38913785 38914231 -110602806 - L1MB4 LINE L1 0 6180 5656 7 881 310 316 9 9 chr6 38914231 38914346 -110602691 - L1M3 LINE L1 -469 5714 5600 7 881 1278 261 12 41 chr6 38915399 38915719 -110601318 + MTEa LTR MaLR 61 371 -8 7 881 1403 231 74 12 chr6 38915816 38916153 -110600884 - MLT1A0 LTR MaLR 0 365 8 7 881 1333 193 141 53 chr6 38917224 38917564 -110599473 + ORR1D2 LTR MaLR 1 370 0 7 881 284 253 0 98 chr6 38917818 38917910 -110599127 - MTEa LTR MaLR -291 88 6 7 881 378 42 0 0 chr6 38918058 38918106 -110598931 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 881 548 273 60 7 chr6 38918483 38918634 -110598403 + L2a LINE L2 3268 3426 0 7 881 432 0 0 0 chr6 38919503 38919551 -110597486 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 881 1352 97 16 11 chr6 38919635 38919822 -110597215 + B2_Mm2 SINE B2 1 188 -7 7 881 216 0 0 0 chr6 38920078 38920102 -110596935 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 881 1914 164 11 6 chr6 38921704 38922072 -110594965 + ORR1B1 LTR MaLR 5 394 0 7 881 353 294 64 9 chr6 38922881 38922991 -110594046 + MER119 DNA MER1_type 419 534 -49 7 881 186 309 151 23 chr6 38923851 38923937 -110593100 - MIRc SINE MIR -147 121 25 7 881 231 188 42 0 chr6 38924159 38924207 -110592830 + L2a LINE L2 3377 3426 0 7 881 315 284 0 24 chr6 38925462 38925545 -110591492 - MLT1A1 LTR MaLR -19 389 309 7 881 418 335 89 6 chr6 38926050 38926218 -110590819 - MARNA DNA Mariner -362 224 43 7 881 250 264 33 44 chr6 38926404 38926495 -110590542 - MER5A DNA MER1_type -23 166 77 7 881 308 294 34 84 chr6 38926762 38926940 -110590097 - L1MD2 LINE L1 -55 6695 6527 7 881 602 269 89 46 chr6 38926957 38927268 -110589769 - L1MD2 LINE L1 -1349 5188 4860 7 881 414 0 0 0 chr6 38927268 38927314 -110589723 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 881 602 269 89 46 chr6 38927314 38927329 -110589708 - L1MD2 LINE L1 -1678 4859 4848 7 881 1335 235 97 17 chr6 38927477 38927767 -110589270 + ORR1D2 LTR MaLR 58 370 0 7 881 246 207 0 0 chr6 38927767 38927825 -110589212 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 881 428 250 143 75 chr6 38927835 38927982 -110589055 - RSINE1 SINE B4 -6 159 3 7 110 724 285 111 19 chr6 38928087 38928412 -110588625 - L1MD2 LINE L1 -2355 4182 3828 7 882 486 194 25 0 chr6 38928582 38928683 -110588354 - B3A SINE B2 -78 117 12 8 882 216 211 63 101 chr6 38928614 38928693 -110588344 - B4A SINE B4 -211 81 6 8 882 712 290 178 10 chr6 38928694 38929195 -110587842 - L1MD2 LINE L1 -4227 2406 1822 7 882 752 276 89 51 chr6 38929255 38929496 -110587541 - B4A SINE B4 -5 287 26 8 882 225 228 17 17 chr6 38929514 38929572 -110587465 + CT-rich Low_complexity Low_complexity 1 58 0 8 882 529 294 180 29 chr6 38929597 38929842 -110587195 - B4A SINE B4 0 292 11 8 882 381 289 90 78 chr6 38929853 38930097 -110586940 - L1MD2 LINE L1 -4799 1834 1588 7 882 181 162 26 26 chr6 38930103 38930141 -110586896 + MER5A DNA MER1_type 152 189 0 8 882 243 61 0 0 chr6 38930480 38930513 -110586524 + (A)n Simple_repeat Simple_repeat 1 33 0 8 882 927 264 41 64 chr6 38930582 38930877 -110586160 - B4A SINE B4 -4 288 1 8 882 183 284 122 0 chr6 38931787 38931861 -110585176 + L2c LINE L2 3289 3371 -16 8 882 1678 220 43 31 chr6 38932271 38932660 -110584377 + MTD LTR MaLR 1 401 -18 8 882 1376 217 88 74 chr6 38932660 38933023 -110584014 - ORR1D2 LTR MaLR -2 368 1 8 882 649 279 76 143 chr6 38933023 38933039 -110583998 + MTD LTR MaLR 366 379 0 8 882 182 397 0 14 chr6 38933555 38933624 -110583413 + L3 LINE CR1 3134 3201 -1288 8 882 333 0 0 0 chr6 38933676 38933713 -110583324 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 882 192 97 0 0 chr6 38933714 38933745 -110583292 + (GA)n Simple_repeat Simple_repeat 2 32 0 8 882 403 312 78 56 chr6 38933811 38934079 -110582958 - B4A SINE B4 -18 274 1 8 882 723 241 49 0 chr6 38934328 38934531 -110582506 + B3 SINE B2 1 213 -3 8 882 323 276 75 32 chr6 38934531 38934688 -110582349 - MIRc SINE MIR -94 168 10 8 882 260 255 157 0 chr6 38935616 38935718 -110581319 + MIRb SINE MIR 73 194 -74 8 882 212 239 68 68 chr6 38935770 38935887 -110581150 + L2c LINE L2 3049 3165 -222 8 882 474 323 65 23 chr6 38936053 38936395 -110580642 + ORR1E LTR MaLR 2 370 0 8 882 729 282 65 39 chr6 38936532 38936842 -110580195 - CR1_Mam LINE CR1 -759 1445 1128 8 882 324 299 0 54 chr6 38938669 38938683 -110578354 + MT2B LTR ERVL 154 162 -439 8 882 489 217 54 0 chr6 38938683 38938775 -110578262 + B1_Mus2 SINE Alu 1 97 -50 8 882 39 0 0 0 chr6 38938787 38938826 -110578211 + AT_rich Low_complexity Low_complexity 1 39 0 8 882 713 245 14 0 chr6 38939365 38939504 -110577533 - RSINE1 SINE B4 -24 141 1 8 882 842 282 122 20 chr6 38939737 38939983 -110577054 - MTE2b LTR MaLR -105 274 4 8 882 529 306 104 43 chr6 38941760 38942472 -110574565 - L1ME3A LINE L1 -151 6022 5262 8 882 683 261 103 38 chr6 38942559 38942822 -110574215 - B4 SINE B4 -12 280 1 8 882 298 305 204 24 chr6 38942901 38943118 -110573919 - L1ME3A LINE L1 -1034 5112 4846 8 882 414 0 0 0 chr6 38943118 38943164 -110573873 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 882 298 305 204 24 chr6 38943164 38943235 -110573802 - L1ME3A LINE L1 -1301 4845 4772 8 882 301 259 73 12 chr6 38943395 38943477 -110573560 - L1ME3A LINE L1 -1644 4502 4416 8 882 295 309 0 96 chr6 38943477 38943496 -110573541 + MT2B LTR ERVL 147 155 -446 8 882 487 200 0 78 chr6 38943496 38943599 -110573438 + B1_Mur3 SINE Alu 1 95 -52 8 882 192 77 0 0 chr6 38943604 38943630 -110573407 + (CTG)n Simple_repeat Simple_repeat 1 26 0 8 882 364 245 322 8 chr6 38943775 38944030 -110573007 - L1ME3A LINE L1 -2169 3977 3643 8 882 302 337 164 10 chr6 38944208 38944403 -110572634 - L3 LINE CR1 -1033 3456 3232 8 882 1073 43 72 0 chr6 38944722 38944860 -110572177 + B1_Mus1 SINE Alu 1 148 0 8 882 246 237 0 33 chr6 38944927 38944988 -110572049 + L2 LINE L2 2522 2580 -839 8 882 363 289 106 24 chr6 38944990 38945160 -110571877 - MTEa LTR MaLR -2 377 194 8 882 405 0 0 0 chr6 38945170 38945215 -110571822 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 882 419 232 0 48 chr6 38945416 38945520 -110571517 + RSINE1 SINE B4 3 101 -64 8 882 399 68 0 0 chr6 38945777 38945836 -110571201 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 882 202 322 10 61 chr6 38945911 38946010 -110571027 - L2 LINE L2 -661 2758 2665 8 882 1109 44 22 0 chr6 38946119 38946254 -110570783 + B1_Mus1 SINE Alu 1 138 -10 8 882 253 47 0 44 chr6 38946254 38946299 -110570738 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 882 218 179 0 0 chr6 38946381 38946420 -110570617 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 882 308 111 19 0 chr6 38946504 38946558 -110570479 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 8 882 395 301 0 0 chr6 38946616 38946719 -110570318 - PB1D10 SINE Alu -14 103 1 8 882 869 236 118 86 chr6 38946821 38947159 -110569878 + ORR1E LTR MaLR 7 355 -4 8 882 202 205 0 25 chr6 38947282 38947313 -110569724 + polypurine Low_complexity Low_complexity 2 32 0 8 882 948 65 0 0 chr6 38947313 38947437 -110569600 + (GGAA)n Simple_repeat Simple_repeat 3 126 0 8 882 900 251 58 74 chr6 38947626 38947884 -110569153 - B4 SINE B4 -37 255 2 8 882 1932 174 117 29 chr6 38948747 38949132 -110567905 + MTD LTR MaLR 1 405 -14 8 882 971 266 116 44 chr6 38949188 38949550 -110567487 - MLT1B LTR MaLR 0 390 3 8 882 741 285 67 50 chr6 38949755 38950079 -110566958 + Lx9 LINE L1 6828 7251 -393 8 882 331 191 48 0 chr6 38950061 38950145 -110566892 + Lx6 LINE L1 7370 7457 -3 8 882 638 280 163 3 chr6 38950164 38950458 -110566579 + Lx9 LINE L1 7253 7593 -51 8 882 1352 228 93 35 chr6 38950821 38951198 -110565839 - MTD LTR MaLR -16 403 5 8 882 362 278 29 67 chr6 38952244 38952348 -110564689 + PB1D9 SINE Alu 21 120 0 8 882 207 0 0 0 chr6 38952348 38952371 -110564666 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 8 882 24 77 0 0 chr6 38952811 38952863 -110564174 + AT_rich Low_complexity Low_complexity 1 52 0 8 882 689 238 35 11 chr6 38952865 38953039 -110563998 + B3A SINE B2 3 180 -18 8 882 182 216 91 111 chr6 38953637 38953736 -110563301 - L3 LINE CR1 -2284 2205 2109 8 882 376 341 93 19 chr6 38953983 38954252 -110562785 + CR1_Mam LINE CR1 1339 1627 -577 8 882 279 376 16 23 chr6 38954947 38955075 -110561962 - MLT1A1 LTR MaLR -12 396 270 8 882 685 278 91 29 chr6 38958137 38958378 -110558659 - ORR1E LTR MaLR 0 359 104 8 882 221 96 77 0 chr6 38958421 38958473 -110558564 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 8 882 560 285 7 0 chr6 38958480 38958617 -110558420 + B1_Mur2 SINE Alu 1 138 -11 8 882 1287 137 61 0 chr6 38958965 38959177 -110557860 + URR1B DNA MER1_type 1 225 0 8 882 453 309 64 44 chr6 38959314 38959543 -110557494 - MLT1A LTR MaLR -12 642 344 8 882 348 348 29 35 chr6 38960622 38960792 -110556245 - MLT1A LTR MaLR -14 376 208 8 882 537 269 22 0 chr6 38960801 38960935 -110556102 - B1F SINE Alu -8 141 5 8 882 475 288 8 8 chr6 38960944 38961063 -110555974 - MLT1A LTR MaLR -254 120 2 8 882 429 20 0 0 chr6 38961887 38961937 -110555100 + (GTTTG)n Simple_repeat Simple_repeat 3 52 0 8 882 806 170 0 0 chr6 38961937 38962072 -110554965 - B1_Mus1 SINE Alu -11 137 3 8 882 528 329 27 0 chr6 38962146 38962295 -110554742 + RSINE1 SINE B4 12 164 -1 8 882 220 349 193 26 chr6 38962463 38962810 -110554227 + L3 LINE CR1 3193 3597 -892 8 882 1085 161 62 0 chr6 38963125 38963317 -110553720 + B3 SINE B2 1 204 -12 8 882 1707 183 93 14 chr6 38964134 38964478 -110552559 + RMER1B Other Other 45 415 -651 8 882 787 292 141 11 chr6 38964448 38964725 -110552312 + RMER1A Other Other 1 313 -717 8 882 3199 220 148 16 chr6 38964776 38965537 -110551500 + RMER1A Other Other 2 863 -167 8 882 1322 79 0 38 chr6 38965599 38965783 -110551254 + B2_Mm2 SINE B2 1 177 -18 8 882 234 91 0 0 chr6 38966331 38966364 -110550673 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 8 882 347 284 72 97 chr6 38966486 38966681 -110550356 + B3A SINE B2 4 193 -5 8 882 852 206 58 14 chr6 38966683 38966890 -110550147 + B3 SINE B2 1 216 0 8 882 22 0 0 0 chr6 38966894 38966916 -110550121 + AT_rich Low_complexity Low_complexity 1 22 0 8 882 210 352 46 66 chr6 38967316 38967468 -110549569 + L3 LINE CR1 4338 4486 -3 8 882 732 173 64 7 chr6 38968325 38968465 -110548572 + B1_Mur2 SINE Alu 2 149 0 8 882 427 262 180 65 chr6 38968513 38968713 -110548324 + ID_B1 SINE B4 1 223 -1 8 882 378 280 56 9 chr6 38968751 38968859 -110548178 + B1F SINE Alu 35 147 -2 8 882 948 171 85 30 chr6 38968864 38969032 -110548005 + B3 SINE B2 1 180 -36 8 882 183 42 0 0 chr6 38969032 38969056 -110547981 + (TA)n Simple_repeat Simple_repeat 1 24 0 8 882 948 171 85 30 chr6 38969056 38969086 -110547951 + B3 SINE B2 181 210 -6 8 882 240 261 44 44 chr6 38969118 38969186 -110547851 + ID4_ SINE ID 3 70 -13 8 882 23 0 0 0 chr6 38969192 38969215 -110547822 + AT_rich Low_complexity Low_complexity 1 23 0 8 882 372 312 13 34 chr6 38969866 38970015 -110547022 + RSINE1 SINE B4 3 148 -17 8 882 231 61 0 0 chr6 38970043 38970076 -110546961 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 882 1328 81 32 5 chr6 38970354 38970540 -110546497 - B2_Mm2 SINE B2 -3 192 2 8 882 234 277 0 0 chr6 38970570 38970617 -110546420 + PB1D9 SINE Alu 4 50 -70 8 882 486 33 0 0 chr6 38971469 38971529 -110545508 + (TTGG)n Simple_repeat Simple_repeat 2 61 0 8 882 471 221 0 0 chr6 38971804 38971926 -110545111 + CT-rich Low_complexity Low_complexity 2 123 0 8 882 291 352 0 11 chr6 38971935 38972027 -110545010 - PB1D10 SINE Alu -6 111 21 8 882 197 304 58 0 chr6 38973616 38973685 -110543352 + MIRm SINE MIR 196 268 -8 8 882 243 0 0 0 chr6 38973803 38973830 -110543207 + (A)n Simple_repeat Simple_repeat 1 27 0 8 882 1091 70 28 0 chr6 38974293 38974436 -110542601 - B1_Mus2 SINE Alu 0 147 1 8 882 312 27 0 0 chr6 38974489 38974526 -110542511 + (TC)n Simple_repeat Simple_repeat 1 37 0 8 882 387 0 0 0 chr6 38974526 38974568 -110542469 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 882 1454 45 11 0 chr6 38975720 38975896 -110541141 + B2_Mm1t SINE B2 2 179 -14 9 882 1076 274 73 24 chr6 38976934 38977425 -110539612 + L1MA5 LINE L1 5761 6275 -25 9 882 1110 249 206 13 chr6 38978787 38979166 -110537871 - L3 LINE CR1 -629 3860 3409 9 882 241 350 67 62 chr6 38979284 38979479 -110537558 - MLT1K LTR MaLR -30 565 370 9 882 185 333 55 62 chr6 38980282 38980410 -110536627 - MER5A DNA MER1_type -56 133 7 9 882 23 0 0 0 chr6 38980666 38980689 -110536348 + AT_rich Low_complexity Low_complexity 1 23 0 9 882 193 230 23 0 chr6 38980831 38980887 -110536150 - L2a LINE L2 -5 3421 3326 9 882 347 401 33 17 chr6 38981611 38981852 -110535185 - B4 SINE B4 0 292 48 9 882 297 330 19 0 chr6 38981862 38981965 -110535072 - B4A SINE B4 -187 105 1 9 882 1193 82 0 0 chr6 38982618 38982765 -110534272 + B1_Mus2 SINE Alu 1 147 0 9 882 962 162 0 6 chr6 38982780 38982960 -110534077 + GA-rich Low_complexity Low_complexity 2 180 0 9 882 243 224 0 0 chr6 38983345 38983421 -110533616 + GA-rich Low_complexity Low_complexity 3 78 0 9 882 579 190 0 0 chr6 38983621 38983763 -110533274 + (CA)n Simple_repeat Simple_repeat 2 143 0 9 882 590 300 68 10 chr6 38983790 38983982 -110533055 - B4A SINE B4 -81 211 9 9 882 1005 293 5 0 chr6 38985288 38985503 -110531534 + B4A SINE B4 10 225 -67 9 882 488 244 218 11 chr6 38985500 38985674 -110531363 + B4A SINE B4 83 292 0 9 882 270 207 0 0 chr6 38985674 38985732 -110531305 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 882 241 294 101 81 chr6 38985733 38985881 -110531156 - MER5A1 DNA MER1_type -15 151 1 9 882 1512 208 25 73 chr6 38988088 38988366 -110528671 + RMER17C LTR ERVK 1 431 -378 9 882 527 0 0 16 chr6 38988366 38988430 -110528607 + (TC)n Simple_repeat Simple_repeat 2 64 0 9 882 1512 199 16 71 chr6 38988430 38988630 -110528407 + RMER17C LTR ERVK 210 410 0 9 882 287 296 0 54 chr6 38989685 38989778 -110527259 + PB1D10 SINE Alu 30 117 0 9 882 321 273 57 0 chr6 38990160 38990248 -110526789 + MIR SINE MIR 107 199 -63 9 882 225 0 0 0 chr6 38990509 38990534 -110526503 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 882 477 0 0 0 chr6 38990534 38990586 -110526451 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 882 1047 270 46 15 chr6 38990593 38990910 -110526127 - MLT2C1 LTR ERVL -48 349 36 9 882 425 241 128 92 chr6 38992233 38992485 -110524552 + ORR1E LTR MaLR 63 343 -36 9 882 931 142 0 33 chr6 38993800 38993953 -110523084 + B1_Mur4 SINE Alu 3 150 0 9 882 1481 74 5 0 chr6 38993974 38994163 -110522874 + B2_Mm1a SINE B2 3 192 -1 9 882 333 214 289 10 chr6 38994305 38994409 -110522628 + B3A SINE B2 1 133 -65 9 882 450 79 0 0 chr6 38994423 38994486 -110522551 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 882 184 344 123 26 chr6 38994834 38994989 -110522048 - L3 LINE CR1 -3471 1018 849 9 882 276 333 12 12 chr6 38996020 38996034 -110521003 - ID_B1 SINE B4 -132 92 8 9 882 308 300 0 14 chr6 38996034 38996105 -110520932 - ID4_ SINE ID -6 77 8 9 882 310 314 81 41 chr6 38996626 38996749 -110520288 + ID_B1 SINE B4 95 222 -2 9 882 191 128 51 0 chr6 38996749 38996788 -110520249 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 9 882 261 0 0 0 chr6 38996821 38996850 -110520187 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 9 882 577 237 94 6 chr6 38997461 38997631 -110519406 - MER53 DNA hAT 0 193 9 9 882 553 232 6 6 chr6 38997916 38998085 -110518952 + (TG)n Simple_repeat Simple_repeat 2 170 0 9 882 198 103 0 0 chr6 38998090 38998119 -110518918 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 9 882 396 230 65 92 chr6 38998152 38998305 -110518732 - B1F2 SINE Alu 0 149 1 9 882 180 229 0 0 chr6 38998877 38998912 -110518125 + L3 LINE CR1 2664 2698 -1791 9 882 233 264 80 54 chr6 38999502 38999614 -110517423 + MIRb SINE MIR 115 229 -39 9 882 228 174 0 21 chr6 39001276 39001323 -110515714 - MER5B DNA MER1_type -1 177 132 1 882 225 0 0 0 chr6 39001733 39001758 -110515279 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 882 840 215 149 97 chr6 39006384 39006734 -110510303 - ORR1D2 LTR MaLR 0 370 3 3 882 253 209 30 60 chr6 39006807 39006975 -110510062 + (TTATA)n Simple_repeat Simple_repeat 4 166 0 4 882 235 346 89 0 chr6 39006983 39007084 -110509953 + RMER12 LTR ERVK 725 834 -488 5 882 341 286 11 32 chr6 39007438 39007532 -110509505 - MER53 DNA hAT -3 190 99 6 882 396 0 0 0 chr6 39007532 39007576 -110509461 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 882 430 285 112 24 chr6 39007593 39007762 -110509275 - MLT1A LTR MaLR -2 372 189 8 882 231 254 30 60 chr6 39008014 39008081 -110508956 + ID4 SINE ID 15 79 -4 9 882 538 273 101 67 chr6 39008452 39008645 -110508392 + B3 SINE B2 1 201 -15 1 882 516 16 0 0 chr6 39008645 39008706 -110508331 + (CATA)n Simple_repeat Simple_repeat 4 64 0 1 882 538 273 101 67 chr6 39008706 39008720 -110508317 + B3 SINE B2 202 215 -1 1 882 1115 72 0 0 chr6 39008769 39008908 -110508129 + B1_Mus1 SINE Alu 1 139 -9 1 882 306 0 0 0 chr6 39008908 39008942 -110508095 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 882 198 0 0 0 chr6 39009105 39009127 -110507910 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 882 196 214 264 22 chr6 39011021 39011112 -110505925 + MER5B DNA MER1_type 1 113 -65 1 882 22 35 0 0 chr6 39011734 39011763 -110505274 + AT_rich Low_complexity Low_complexity 1 29 0 1 882 296 346 33 6 chr6 39012008 39012188 -110504849 + L1M5 LINE L1 5559 5743 -497 1 882 275 271 56 0 chr6 39012249 39012329 -110504708 + ID4_ SINE ID 16 103 -49 1 882 231 114 0 0 chr6 39012807 39012842 -110504195 + (ATGGTG)n Simple_repeat Simple_repeat 4 38 0 1 882 678 182 46 15 chr6 39012840 39013320 -110503717 + (TG)n Simple_repeat Simple_repeat 1 495 0 2 882 315 0 0 0 chr6 39013639 39013674 -110503363 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 882 2918 106 2 15 chr6 39013821 39014233 -110502804 - MTB_Mm LTR MaLR 0 407 1 2 882 570 211 0 35 chr6 39014867 39014980 -110502057 + PB1D10 SINE Alu 3 111 -6 2 882 412 235 275 29 chr6 39015033 39015204 -110501833 + B3 SINE B2 4 216 0 2 882 198 0 0 0 chr6 39016069 39016091 -110500946 + (CAGGA)n Simple_repeat Simple_repeat 3 24 0 2 882 258 32 0 0 chr6 39016091 39016121 -110500916 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 882 378 0 0 0 chr6 39016121 39016162 -110500875 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 882 749 304 29 18 chr6 39016178 39016459 -110500578 - B4A SINE B4 -8 284 1 2 882 198 0 0 0 chr6 39016524 39016546 -110500491 + (AGGGGG)n Simple_repeat Simple_repeat 3 24 0 2 882 555 292 25 6 chr6 39016549 39016670 -110500367 - B4A SINE B4 -65 227 104 3 882 505 167 156 0 chr6 39016670 39016766 -110500271 + URR1A DNA MER1_type 2 112 -114 3 882 288 256 43 43 chr6 39017272 39017366 -110499671 + MIR3 SINE MIR 88 181 -27 3 882 416 104 15 0 chr6 39017858 39017925 -110499112 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 882 332 59 0 19 chr6 39017941 39017993 -110499044 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 882 778 308 120 20 chr6 39018411 39018703 -110498334 - MER45B DNA Tip100 0 1040 720 3 882 297 323 123 46 chr6 39019067 39019262 -110497775 - MER45C DNA Tip100 -684 269 60 3 882 483 295 166 46 chr6 39019839 39020177 -110496860 - ORR1E LTR MaLR 0 379 1 3 882 423 0 0 0 chr6 39020193 39020240 -110496797 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 882 933 221 233 7 chr6 39020782 39021091 -110495946 - MTE2a LTR MaLR 0 379 1 3 882 297 0 0 0 chr6 39021912 39021945 -110495092 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 882 195 42 0 0 chr6 39021945 39021968 -110495069 + (CG)n Simple_repeat Simple_repeat 2 25 0 4 882 717 231 66 76 chr6 39022008 39022205 -110494832 - B3A SINE B2 -3 195 1 4 882 220 221 27 93 chr6 39022813 39022888 -110494149 - L4 LINE RTE -7 2022 1953 4 882 440 269 19 0 chr6 39023094 39023202 -110493835 + PB1D9 SINE Alu 2 111 -9 4 882 434 273 0 35 chr6 39023265 39023379 -110493658 + PB1D10 SINE Alu 2 111 -6 4 882 825 242 46 88 chr6 39023538 39023873 -110493164 - RLTR11B LTR ERVK -52 475 162 4 882 2864 59 70 0 chr6 39023873 39024247 -110492790 - MTB LTR MaLR 0 400 1 4 882 825 217 47 102 chr6 39024247 39024418 -110492619 - RLTR11B LTR ERVK -292 161 1 4 882 680 260 151 20 chr6 39025661 39025912 -110491125 - B4 SINE B4 -3 289 6 4 882 276 259 48 11 chr6 39026071 39026166 -110490871 - ORR1E LTR MaLR -13 366 272 4 882 186 250 52 0 chr6 39026324 39026420 -110490617 + GA-rich Low_complexity Low_complexity 4 104 0 5 882 299 271 36 36 chr6 39026564 39026675 -110490362 - MLT1A1 LTR MaLR -294 114 4 5 882 1500 98 47 0 chr6 39026813 39027028 -110490009 + URR1B DNA MER1_type 1 225 0 5 882 1911 89 42 125 chr6 39027057 39027416 -110489621 - ORR1A4 LTR MaLR 0 329 1 5 882 275 213 44 0 chr6 39027417 39027499 -110489538 + L1MB2 LINE L1 6082 6177 -3 5 882 1345 78 39 0 chr6 39027895 39028074 -110488963 - B2_Mm2 SINE B2 -5 190 5 5 882 306 0 0 0 chr6 39028131 39028165 -110488872 + (A)n Simple_repeat Simple_repeat 1 34 0 5 882 216 0 0 0 chr6 39029105 39029129 -110487908 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 5 882 2436 83 3 60 chr6 39029163 39029510 -110487527 - ORR1A2 LTR MaLR 0 327 1 5 882 2803 156 62 4 chr6 39029967 39030468 -110486569 - MT2A LTR ERVL -2 531 2 5 882 727 300 15 64 chr6 39031357 39031560 -110485477 - B3A SINE B2 0 198 6 6 882 216 143 0 0 chr6 39031565 39031607 -110485430 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 882 1379 179 47 100 chr6 39032155 39032305 -110484732 - RMER6D LTR ERVK 0 690 557 6 882 1152 55 0 46 chr6 39032305 39032458 -110484579 - B1_Mus1 SINE Alu 0 148 3 6 882 1723 146 187 140 chr6 39032458 39032991 -110484046 - RMER6D LTR ERVK -134 556 1 6 882 788 101 335 29 chr6 39033465 39033638 -110483399 + URR1A DNA MER1_type 1 226 0 6 882 749 296 68 34 chr6 39035975 39036328 -110480709 + MLT1A0 LTR MaLR 1 365 0 6 882 190 225 0 24 chr6 39036579 39036620 -110480417 - L2 LINE L2 -2932 487 448 6 882 251 298 0 0 chr6 39036986 39037043 -110479994 + PB1 SINE Alu 1 57 -70 6 882 432 155 14 0 chr6 39037087 39037158 -110479879 + ID2 SINE ID 2 73 -10 6 882 212 233 38 53 chr6 39037879 39037966 -110479071 + MIRm SINE MIR 113 195 -13 6 882 198 0 0 0 chr6 39038166 39038188 -110478849 + (T)n Simple_repeat Simple_repeat 1 22 0 7 882 738 211 7 20 chr6 39038191 39038341 -110478696 - B1_Mur2 SINE Alu 0 149 2 7 882 1409 79 16 0 chr6 39039203 39039392 -110477645 - B2_Mm1a SINE B2 0 193 2 7 882 216 67 0 0 chr6 39039810 39039840 -110477197 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 7 882 1115 89 7 0 chr6 39042197 39042343 -110474694 + B1_Mm SINE Alu 1 147 0 7 882 1190 75 0 0 chr6 39042506 39042653 -110474384 - B1_Mus2 SINE Alu 0 147 1 7 882 366 61 0 0 chr6 39043751 39043800 -110473237 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 882 444 320 144 61 chr6 39044593 39045099 -110471938 + LTR82A LTR ERVL 276 823 -49 7 882 1146 27 0 93 chr6 39045970 39046132 -110470905 + B1_Mus2 SINE Alu 1 147 0 7 882 2950 169 71 13 chr6 39046721 39047255 -110469782 - RLTR12A LTR ERVK -3 565 1 7 882 287 311 0 0 chr6 39047491 39047552 -110469485 + RSINE1 SINE B4 14 74 -91 8 882 6034 182 13 5 chr6 39048525 39049578 -110467459 + MurERV4-int LTR ERVK 1236 2297 -2963 8 882 347 180 82 0 chr6 39049584 39049645 -110467392 + RMER6D LTR ERVK 654 719 -1 8 882 238 355 94 31 chr6 39050880 39051072 -110465965 - MIR SINE MIR -56 206 3 8 882 907 225 5 21 chr6 39051451 39051621 -110465416 + B3A SINE B2 16 185 -13 8 882 303 49 0 0 chr6 39051621 39051662 -110465375 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 882 183 42 0 0 chr6 39051662 39051685 -110465352 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 882 907 225 5 21 chr6 39051685 39051699 -110465338 + B3A SINE B2 186 197 -1 8 882 379 279 94 64 chr6 39051723 39051926 -110465111 - B3 SINE B2 -6 210 2 8 882 31 26 0 0 chr6 39051932 39051970 -110465067 + AT_rich Low_complexity Low_complexity 1 38 0 8 882 267 189 0 0 chr6 39052365 39052418 -110464619 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 882 769 247 25 0 chr6 39055029 39055187 -110461850 + B3 SINE B2 50 211 -5 9 882 389 186 64 18 chr6 39056811 39056902 -110460135 + B4 SINE B4 1 92 -200 9 882 976 203 96 0 chr6 39056903 39057100 -110459937 + B3 SINE B2 1 216 0 9 882 503 227 18 26 chr6 39057106 39057219 -110459818 + PB1D9 SINE Alu 1 112 -8 9 882 728 200 0 6 chr6 39057224 39057395 -110459642 + (TA)n Simple_repeat Simple_repeat 2 171 0 9 882 180 250 0 0 chr6 39057400 39057448 -110459589 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 9 882 709 291 5 52 chr6 39057457 39057649 -110459388 + B4 SINE B4 82 264 -28 9 882 1488 91 0 5 chr6 39057816 39058003 -110459034 + B2_Mm2 SINE B2 1 186 -9 9 882 227 359 42 8 chr6 39058302 39058420 -110458617 + PB1 SINE Alu 4 125 -2 9 882 3884 255 73 46 chr6 39058612 39059291 -110457746 + Lx8 LINE L1 6089 6788 -685 9 110 1687 47 0 5 chr6 39059291 39059483 -110457554 - B2_Mm1t SINE B2 -1 192 2 1 883 3884 255 73 46 chr6 39059483 39060000 -110457037 + Lx8 LINE L1 6789 7318 -155 9 883 653 297 14 0 chr6 39060001 39060146 -110456891 + RSINE1 SINE B4 19 165 0 1 883 769 263 65 15 chr6 39060212 39060413 -110456624 + B3 SINE B2 1 211 -5 1 883 1200 69 14 0 chr6 39060513 39060658 -110456379 + B1_Mus1 SINE Alu 2 148 0 1 883 943 192 137 0 chr6 39060738 39060920 -110456117 + B3 SINE B2 1 207 -9 1 883 243 271 29 0 chr6 39060986 39061056 -110455981 - L2a LINE L2 -22 3404 3333 1 883 256 244 285 0 chr6 39062118 39062241 -110454796 + RSINE1 SINE B4 1 158 -7 1 883 21 36 0 0 chr6 39062261 39062289 -110454748 + AT_rich Low_complexity Low_complexity 1 28 0 1 883 329 336 58 17 chr6 39062327 39062479 -110454558 - ID_B1 SINE B4 -39 253 89 1 883 302 326 26 12 chr6 39062708 39062852 -110454185 + MIRb SINE MIR 89 240 -22 1 883 23 0 0 0 chr6 39063505 39063528 -110453509 + GC_rich Low_complexity Low_complexity 1 23 0 1 883 590 252 13 20 chr6 39064321 39064471 -110452566 + MLT1B LTR MaLR 2 150 -240 1 883 331 250 24 0 chr6 39064457 39064541 -110452496 + MLT1B LTR MaLR 268 353 -37 1 883 366 256 47 0 chr6 39064555 39064641 -110452396 + PB1D10 SINE Alu 13 102 -15 1 883 203 170 21 0 chr6 39064653 39064700 -110452337 + GA-rich Low_complexity Low_complexity 3 50 0 1 883 300 243 48 137 chr6 39064984 39065108 -110451929 + MT2B LTR ERVL 152 264 -337 1 883 682 160 67 0 chr6 39065012 39065131 -110451906 + B1_Mus1 SINE Alu 12 138 -10 1 883 293 292 40 32 chr6 39065022 39065146 -110451891 - YREP_Mm Unknown Unknown -1516 296 172 1 883 489 277 217 7 chr6 39065173 39065311 -110451726 + B3A SINE B2 1 167 -31 1 883 24 0 0 0 chr6 39065343 39065367 -110451670 + AT_rich Low_complexity Low_complexity 1 24 0 1 883 1488 81 11 0 chr6 39065388 39065573 -110451464 + B2_Mm1a SINE B2 1 187 -6 1 883 218 289 167 19 chr6 39066246 39066407 -110450630 - MIR SINE MIR -87 181 1 1 883 608 233 0 20 chr6 39069204 39069347 -110447690 + B3 SINE B2 18 157 -59 1 883 444 174 58 0 chr6 39069347 39069433 -110447604 + B1_Mm SINE Alu 4 94 -53 1 883 24 32 0 0 chr6 39069561 39069592 -110447445 + AT_rich Low_complexity Low_complexity 1 31 0 1 883 588 268 17 87 chr6 39069773 39069945 -110447092 + RSINE1 SINE B4 2 161 -4 1 883 1194 101 0 16 chr6 39070152 39070198 -110446839 + B2_Mm2 SINE B2 15 60 -135 1 883 3080 128 92 4 chr6 39070198 39070363 -110446674 + RMER16 LTR ERVK 1 174 -359 1 883 943 32 56 119 chr6 39070363 39070506 -110446531 + B1_Mus1 SINE Alu 3 136 -12 1 883 3080 128 92 4 chr6 39070506 39070827 -110446210 + RMER16 LTR ERVK 175 529 -4 1 883 1194 101 0 16 chr6 39070827 39070962 -110446075 + B2_Mm2 SINE B2 61 193 -2 1 883 524 293 102 40 chr6 39071232 39071506 -110445531 + L1M4 LINE L1 410 700 -6204 1 883 991 277 169 15 chr6 39071603 39072170 -110444867 + L1M4 LINE L1 844 1473 -5431 1 883 1093 224 39 0 chr6 39072175 39072380 -110444657 + B3 SINE B2 1 213 -3 1 883 468 262 89 72 chr6 39072418 39072690 -110444347 + L1M4 LINE L1 1561 1840 -5064 1 883 413 271 89 0 chr6 39072691 39072814 -110444223 + B3 SINE B2 78 209 -7 1 883 263 213 130 0 chr6 39072824 39072932 -110444105 + L1M4 LINE L1 3800 3921 -3085 1 883 424 241 163 5 chr6 39072949 39073145 -110443892 + L1M4 LINE L1 3977 4203 -2803 1 883 1041 267 98 70 chr6 39073167 39073638 -110443399 + MER74A LTR ERVL 23 506 -52 1 883 599 282 12 102 chr6 39073659 39073718 -110443319 - RSINE1 SINE B4 -3 162 109 1 883 982 124 22 0 chr6 39073718 39073855 -110443182 - B1_Mus1 SINE Alu -6 142 3 1 883 599 282 12 102 chr6 39073855 39073961 -110443076 - RSINE1 SINE B4 -57 108 12 1 883 351 206 106 37 chr6 39074000 39074097 -110442940 - Lx9 LINE L1 -9 7635 7535 1 883 225 0 0 0 chr6 39074097 39074122 -110442915 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 883 351 206 106 37 chr6 39074122 39074185 -110442852 - Lx9 LINE L1 -110 7534 7464 1 883 875 180 46 31 chr6 39074215 39074410 -110442627 - Lx9 LINE L1 -127 7517 7320 1 883 539 316 190 12 chr6 39074445 39074772 -110442265 - L2 LINE L2 -988 2431 2047 1 883 772 285 123 30 chr6 39074778 39075111 -110441926 - MLT1H2 LTR MaLR -9 480 117 1 883 242 213 0 0 chr6 39075139 39075186 -110441851 + B3 SINE B2 3 49 -167 1 883 195 294 14 68 chr6 39075937 39076010 -110441027 + L2b LINE L2 3306 3374 -1 1 883 248 283 101 28 chr6 39076296 39076405 -110440632 + MLT1B LTR MaLR 153 269 -121 1 883 1167 223 39 11 chr6 39076463 39076748 -110440289 + MTEb LTR MaLR 20 312 -67 1 883 195 42 0 0 chr6 39076886 39076910 -110440127 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 883 822 73 0 0 chr6 39076916 39077026 -110440011 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 1 883 3621 132 65 9 chr6 39077036 39077793 -110439244 - Lx2 LINE L1 0 7000 6115 1 883 633 79 22 0 chr6 39077790 39077879 -110439158 - Lx2 LINE L1 -1114 5883 5793 1 883 8864 55 29 10 chr6 39077879 39079183 -110437854 - L1VL4 LINE L1 -1488 2071 769 1 883 1498 70 37 0 chr6 39079183 39079370 -110437667 - B2_Mm2 SINE B2 0 195 2 1 883 5396 82 38 35 chr6 39079370 39079920 -110437117 - L1VL4 LINE L1 -5534 768 194 1 883 298 303 79 39 chr6 39081118 39081245 -110435792 - MIRm SINE MIR -127 149 18 1 883 2268 106 163 8 chr6 39081575 39081936 -110435101 + RLTR9B2 LTR ERVK 1 417 -3 1 883 591 196 18 45 chr6 39082129 39082241 -110434796 + B1_Mur4 SINE Alu 3 111 -39 1 883 656 252 56 6 chr6 39082300 39082460 -110434577 + B3A SINE B2 1 168 -30 1 883 572 277 258 22 chr6 39083490 39083719 -110433318 - B4A SINE B4 -8 284 2 1 883 2062 110 28 43 chr6 39083774 39084098 -110432939 + ORR1A2 LTR MaLR 1 319 -8 1 883 5687 136 25 15 chr6 39084102 39085648 -110431389 + ORR1A2-int LTR MaLR 1 1623 -340 1 883 323 73 0 0 chr6 39085648 39085689 -110431348 + ORR1A2 LTR MaLR 286 326 0 1 883 189 0 0 0 chr6 39086379 39086400 -110430637 + (A)n Simple_repeat Simple_repeat 1 21 0 1 883 221 231 0 71 chr6 39088702 39088758 -110428279 - ID4 SINE ID -6 77 26 1 883 266 321 33 87 chr6 39089488 39089638 -110427399 - MIRm SINE MIR -99 177 36 1 883 1027 91 14 27 chr6 39089686 39089833 -110427204 - B1_Mus1 SINE Alu -3 145 1 1 883 1300 54 0 0 chr6 39089859 39090007 -110427030 - B1_Mus1 SINE Alu 0 148 1 1 883 24 77 0 0 chr6 39092587 39092639 -110424398 + AT_rich Low_complexity Low_complexity 1 52 0 1 883 1229 181 23 18 chr6 39093783 39094003 -110423034 + URR1B DNA MER1_type 5 225 0 1 883 1156 68 0 39 chr6 39094093 39094246 -110422791 - B1_Mus2 SINE Alu 0 147 1 1 883 212 77 77 0 chr6 39094664 39094716 -110422321 + CT-rich Low_complexity Low_complexity 1 56 0 1 883 717 279 0 0 chr6 39094747 39094887 -110422150 - RSINE1 SINE B4 0 165 26 1 883 240 296 47 47 chr6 39095087 39095172 -110421865 - RSINE1 SINE B4 -65 100 16 1 883 260 330 57 48 chr6 39096025 39096149 -110420888 + MIRb SINE MIR 30 154 -114 1 883 444 254 152 0 chr6 39096578 39096696 -110420341 - RSINE1 SINE B4 -6 159 24 1 883 190 219 133 27 chr6 39097772 39097847 -110419190 + L3 LINE CR1 2473 2555 -1934 1 883 250 169 77 18 chr6 39100455 39100538 -110416499 - B1F SINE Alu -3 146 19 1 883 665 106 0 50 chr6 39100538 39100657 -110416380 - Lx3_Mus LINE L1 -1020 5989 5877 1 883 283 269 0 69 chr6 39100657 39100729 -110416308 - B1F2 SINE Alu -82 67 1 1 883 22 0 0 0 chr6 39100868 39100890 -110416147 + AT_rich Low_complexity Low_complexity 1 22 0 1 883 1025 145 0 6 chr6 39101063 39101243 -110415794 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 883 259 245 37 19 chr6 39101695 39101749 -110415288 - PB1D10 SINE Alu -62 55 1 1 883 474 153 14 0 chr6 39102043 39102115 -110414922 + ID4_ SINE ID 2 74 -9 1 883 914 147 0 27 chr6 39103071 39103218 -110413819 + B1_Mur4 SINE Alu 8 150 0 1 883 645 214 8 8 chr6 39103623 39103755 -110413282 - B1_Mus2 SINE Alu 0 147 16 1 883 410 285 13 53 chr6 39103755 39103774 -110413263 - ID_B1 SINE B4 0 223 79 1 883 1955 94 14 0 chr6 39103833 39104109 -110412928 - L1_Mm LINE L1 -520 5363 5084 1 883 1774 138 9 78 chr6 39104209 39104555 -110412482 - RLTRETN_Mm LTR ERVK 0 322 1 1 883 198 0 0 0 chr6 39104959 39104981 -110412056 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 883 241 279 254 16 chr6 39105048 39105237 -110411800 + MIRb SINE MIR 10 247 -21 1 883 12763 89 8 39 chr6 39105339 39107978 -110409059 - L1_Mus2 LINE L1 0 6566 4023 1 883 236 79 45 45 chr6 39108127 39108193 -110408844 + A-rich Low_complexity Low_complexity 2 67 0 1 883 615 161 0 0 chr6 39108497 39108590 -110408447 + B1_Mur3 SINE Alu 49 141 -8 1 883 6623 96 2 11 chr6 39108616 39109533 -110407504 + L1_Mm LINE L1 4567 5482 -401 1 883 4815 69 25 2 chr6 39109533 39110129 -110406908 + L1_Mus1 LINE L1 5958 6567 0 1 883 6623 96 2 11 chr6 39110129 39110150 -110406887 + L1_Mm LINE L1 5483 5497 -386 1 883 1365 96 21 0 chr6 39110170 39110357 -110406680 + B2_Mm1a SINE B2 1 191 -2 1 883 404 280 114 45 chr6 39110457 39110835 -110406202 + L1M5 LINE L1 2461 2864 -3282 1 883 951 238 26 5 chr6 39110888 39111082 -110405955 + B3A SINE B2 1 198 0 1 883 537 216 101 36 chr6 39111154 39111293 -110405744 - RSINE1 SINE B4 -13 152 5 1 883 423 260 9 37 chr6 39111296 39111404 -110405633 - B4A SINE B4 -63 229 125 1 883 324 338 73 0 chr6 39111561 39111780 -110405257 + L1M5 LINE L1 3982 4216 -1930 1 883 501 273 49 0 chr6 39112092 39112235 -110404802 + RSINE1 SINE B4 3 152 -13 1 883 2901 126 67 119 chr6 39112516 39113198 -110403839 + RMER6A LTR ERVK 110 756 0 1 883 307 231 0 71 chr6 39113694 39113764 -110403273 + ID4 SINE ID 2 66 -17 1 883 400 171 13 0 chr6 39113770 39113846 -110403191 + MADE2 DNA Mariner 1 77 -3 1 883 507 229 130 0 chr6 39114010 39114141 -110402896 + B1_Mur2 SINE Alu 2 149 0 1 883 1206 48 7 0 chr6 39114152 39114297 -110402740 + B1_Mus2 SINE Alu 2 147 0 1 883 365 196 0 2 chr6 39114324 39114388 -110402649 - PB1D9 SINE Alu -79 68 6 1 883 1078 150 16 16 chr6 39114556 39114746 -110402291 + URR1A DNA MER1_type 5 194 -32 1 883 351 290 5 107 chr6 39114746 39114779 -110402258 - CYRA11_Mm Unknown Y-chromosome -234 382 183 2 883 390 250 0 0 chr6 39114863 39114935 -110402102 + B3A SINE B2 3 74 -124 2 883 216 0 0 0 chr6 39114953 39114977 -110402060 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 883 871 164 7 28 chr6 39115392 39115536 -110401501 + B1_Mus2 SINE Alu 2 142 -5 2 883 296 274 157 0 chr6 39115672 39115774 -110401263 + LTR87 LTR ERVL? 1 118 -506 2 883 457 344 69 22 chr6 39115804 39116036 -110401001 + LTR87 LTR ERVL? 186 428 -196 2 883 22 0 0 0 chr6 39116299 39116321 -110400716 + AT_rich Low_complexity Low_complexity 1 22 0 2 883 1108 85 0 0 chr6 39116448 39116589 -110400448 - B1_Mus2 SINE Alu -5 142 2 2 883 1084 91 0 20 chr6 39117279 39117425 -110399612 + B1_Mus1 SINE Alu 1 143 -5 2 883 515 269 103 110 chr6 39117511 39117773 -110399264 + L1MB7 LINE L1 5577 5872 -312 2 883 508 191 244 0 chr6 39117773 39117888 -110399149 + B1F SINE Alu 1 143 -6 2 883 515 269 103 110 chr6 39117888 39118188 -110398849 + L1MB7 LINE L1 5873 6135 -49 2 883 340 278 160 41 chr6 39119471 39119640 -110397397 + MER3 DNA MER1_type 21 209 0 2 883 585 0 0 0 chr6 39119928 39119993 -110397044 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 2 883 658 183 142 0 chr6 39120483 39120603 -110396434 - B1_Mur2 SINE Alu -12 137 1 2 883 186 256 26 0 chr6 39121145 39121184 -110395853 + MIR SINE MIR 114 153 -55 2 883 2891 144 4 4 chr6 39121673 39122167 -110394870 - L1_Mm LINE L1 -296 5587 5094 2 883 1215 96 0 0 chr6 39122167 39122345 -110394692 + Lx LINE L1 6471 6648 -6 2 883 213 94 0 0 chr6 39124240 39124272 -110392765 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 2 883 261 0 0 0 chr6 39124332 39124361 -110392676 + (CCA)n Simple_repeat Simple_repeat 2 30 0 2 883 633 158 132 8 chr6 39124361 39124482 -110392555 - B1_Mus1 SINE Alu -11 137 2 2 883 22 35 0 0 chr6 39125783 39125812 -110391225 + AT_rich Low_complexity Low_complexity 1 29 0 2 883 1465 47 10 25 chr6 39125822 39126018 -110391019 + B2_Mm2 SINE B2 3 195 0 2 883 550 242 92 52 chr6 39126576 39126750 -110390287 + B3A SINE B2 3 183 -15 2 883 506 186 21 0 chr6 39127007 39127104 -110389933 + ORR1D1 LTR MaLR 3 101 -273 2 883 2966 148 118 36 chr6 39127104 39127748 -110389289 + RMER1B Other Other 370 1066 0 2 883 720 202 221 75 chr6 39127748 39128015 -110389022 + ORR1D1 LTR MaLR 69 374 0 2 883 1449 218 62 8 chr6 39128130 39128486 -110388551 + ORR1D1 LTR MaLR 3 379 0 2 883 238 263 40 0 chr6 39128544 39128620 -110388417 - Charlie9 DNA MER1_type -2673 84 6 2 883 710 199 29 7 chr6 39128765 39128902 -110388135 - B1_Mur2 SINE Alu -9 140 1 2 883 185 213 63 32 chr6 39129334 39129397 -110387640 + L3 LINE CR1 82 146 -4343 2 883 349 216 41 10 chr6 39129760 39129858 -110387179 + Charlie9 DNA MER1_type 6 106 -2651 2 883 241 328 42 114 chr6 39130371 39130395 -110386642 - B4A SINE B4 -49 243 185 2 883 671 118 16 40 chr6 39130395 39130519 -110386518 - B1_Mur1 SINE Alu 0 149 29 2 883 241 328 42 114 chr6 39130519 39130564 -110386473 - B4A SINE B4 -49 184 65 2 883 1293 94 16 5 chr6 39130573 39130765 -110386272 - B2_Mm2 SINE B2 0 195 2 2 883 701 127 36 9 chr6 39131144 39131255 -110385782 + B1_Mur4 SINE Alu 31 144 -6 2 883 270 0 0 0 chr6 39131257 39131287 -110385750 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 883 270 0 0 0 chr6 39131287 39131317 -110385720 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 883 376 267 137 16 chr6 39132082 39132265 -110384772 + L1M2 LINE L1 4586 4790 -1353 2 883 1207 34 7 0 chr6 39132408 39132554 -110384483 - B1_Mus1 SINE Alu 0 148 2 2 883 235 256 0 12 chr6 39132630 39132713 -110384324 + L1M2 LINE L1 5078 5159 -984 2 883 889 222 45 15 chr6 39132723 39132930 -110384107 + B3 SINE B2 2 194 -1 2 883 323 283 0 19 chr6 39132939 39133047 -110383990 + L1_Mur3 LINE L1 5161 5266 -614 2 883 504 275 55 27 chr6 39133136 39133297 -110383740 + B3 SINE B2 2 168 -48 2 883 258 32 0 0 chr6 39133297 39133328 -110383709 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 883 504 275 55 27 chr6 39133328 39133349 -110383688 + B3 SINE B2 169 189 -27 2 883 393 149 30 0 chr6 39133399 39133466 -110383571 + B3 SINE B2 2 70 -146 2 883 441 303 178 74 chr6 39133499 39133891 -110383146 + L1M5 LINE L1 4544 5001 -1145 2 883 525 274 0 9 chr6 39133891 39134005 -110383032 + PB1D9 SINE Alu 2 114 -6 2 883 441 303 178 74 chr6 39134005 39134271 -110382766 + L1M5 LINE L1 5002 5269 -877 2 883 522 269 66 60 chr6 39134506 39134688 -110382349 + B3A SINE B2 1 183 -15 2 883 359 321 44 9 chr6 39134960 39135073 -110381964 + ID_B1 SINE B4 88 204 -20 2 883 23 54 0 0 chr6 39135098 39135135 -110381902 + AT_rich Low_complexity Low_complexity 1 37 0 2 883 755 282 35 5 chr6 39135236 39135439 -110381598 + B3 SINE B2 1 209 -7 2 883 27 49 0 0 chr6 39135440 39135481 -110381556 + AT_rich Low_complexity Low_complexity 1 41 0 2 883 25 51 0 0 chr6 39135507 39135546 -110381491 + AT_rich Low_complexity Low_complexity 1 39 0 2 883 201 171 0 0 chr6 39136471 39136506 -110380531 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 883 252 0 0 0 chr6 39137072 39137100 -110379937 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 883 491 183 126 99 chr6 39137346 39137528 -110379509 - B3 SINE B2 -7 188 2 2 883 765 220 11 91 chr6 39137552 39137650 -110379387 - B3A SINE B2 -37 161 75 2 883 1158 62 0 0 chr6 39137650 39137796 -110379241 + B1_Mus2 SINE Alu 2 147 0 2 883 765 220 11 91 chr6 39137796 39137872 -110379165 - B3A SINE B2 -124 74 1 2 883 351 0 0 0 chr6 39138227 39138266 -110378771 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 883 431 260 0 55 chr6 39138416 39138526 -110378511 + B4 SINE B4 3 106 -186 2 883 1001 33 0 0 chr6 39138525 39138646 -110378391 - B1_Mus2 SINE Alu -12 135 15 2 883 871 251 18 0 chr6 39138642 39138809 -110378228 + B4A SINE B4 119 288 -4 2 883 633 61 0 0 chr6 39138821 39138903 -110378134 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 883 199 326 126 0 chr6 39138904 39138999 -110378038 + MER5A DNA MER1_type 61 167 -22 2 883 551 232 56 28 chr6 39139295 39139437 -110377600 + B1_Mur1 SINE Alu 1 146 -3 2 883 526 137 162 0 chr6 39139583 39139697 -110377340 - B1_Mur2 SINE Alu 0 149 9 2 883 491 261 102 22 chr6 39139926 39140063 -110376974 - B1_Mur1 SINE Alu -1 148 1 2 883 481 242 14 11 chr6 39140076 39140176 -110376861 - B1F SINE Alu -11 109 2 2 883 601 275 94 59 chr6 39141586 39141841 -110375196 + MTC LTR MaLR 1 264 -115 2 883 363 191 90 9 chr6 39141848 39141959 -110375078 + Ricksha_c DNA MuDR 786 905 -1143 2 883 438 300 6 108 chr6 39141989 39142146 -110374891 + B4A SINE B4 2 142 -150 2 883 226 333 0 91 chr6 39142168 39142267 -110374770 + RSINE1 SINE B4 76 165 0 2 883 383 252 30 0 chr6 39142256 39142355 -110374682 - Tigger6a DNA MER2_type -41 1042 941 2 883 873 253 220 37 chr6 39142561 39143024 -110374013 - Tigger6a DNA MER2_type -534 549 2 2 883 729 135 53 53 chr6 39143024 39143053 -110373984 + MTC LTR MaLR 294 321 -100 2 883 1448 161 252 29 chr6 39143053 39143430 -110373607 + RMER6B LTR ERVK 1 461 0 2 883 729 135 53 53 chr6 39143430 39143527 -110373510 + MTC LTR MaLR 322 420 -1 2 883 750 274 55 5 chr6 39143582 39143784 -110373253 - ID_B1 SINE B4 -2 222 11 2 883 368 299 156 28 chr6 39143807 39144121 -110372916 + L1M5 LINE L1 4285 4637 -1509 2 883 566 304 87 6 chr6 39144125 39144297 -110372740 + B3A SINE B2 3 188 -10 2 883 250 280 83 37 chr6 39144368 39144536 -110372501 + L1M5 LINE L1 4672 4846 -1300 2 883 369 75 0 0 chr6 39144556 39144609 -110372428 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2 883 896 211 48 19 chr6 39144684 39144892 -110372145 - B3 SINE B2 -1 215 2 2 883 337 390 70 19 chr6 39144895 39145052 -110371985 - B3A SINE B2 -10 188 24 2 883 207 100 0 0 chr6 39145064 39145094 -110371943 + (A)n Simple_repeat Simple_repeat 1 30 0 2 883 409 331 52 65 chr6 39145177 39145468 -110371569 + L1M5 LINE L1 5004 5290 -856 2 883 316 225 180 0 chr6 39145474 39145585 -110371452 + B1F2 SINE Alu 1 131 -18 2 883 285 241 117 2 chr6 39145717 39145810 -110371227 - PB1D7 SINE Alu -32 117 17 2 883 405 0 0 0 chr6 39145871 39145916 -110371121 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 883 1387 69 21 0 chr6 39146230 39146418 -110370619 + B2_Mm1t SINE B2 2 193 0 2 883 308 291 24 64 chr6 39146418 39146543 -110370494 + RSINE1 SINE B4 46 165 0 2 883 236 203 16 0 chr6 39146585 39146649 -110370388 + (TTGG)n Simple_repeat Simple_repeat 4 68 0 2 883 922 152 0 14 chr6 39146649 39146796 -110370241 - B1_Mur4 SINE Alu -1 149 5 2 883 523 281 155 5 chr6 39146933 39147126 -110369911 + ID_B1 SINE B4 3 224 0 2 883 678 234 57 42 chr6 39147139 39147331 -110369706 + B3 SINE B2 5 199 -17 2 883 24 53 0 0 chr6 39147350 39147388 -110369649 + AT_rich Low_complexity Low_complexity 1 38 0 2 883 383 268 39 8 chr6 39147421 39147525 -110369512 - PB1D10 SINE Alu -37 112 8 2 883 288 179 30 38 chr6 39147516 39147588 -110369449 + PB1D9 SINE Alu 59 126 -23 2 883 922 229 157 39 chr6 39147742 39148174 -110368863 + L1MC4a LINE L1 6316 6798 -1084 2 883 319 158 53 137 chr6 39148316 39148402 -110368635 + PB1D9 SINE Alu 29 108 -12 2 883 207 0 0 0 chr6 39148402 39148425 -110368612 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 883 239 139 0 0 chr6 39148767 39148803 -110368234 + PB1D10 SINE Alu 30 65 -52 2 883 355 188 0 0 chr6 39148989 39149058 -110367979 + RLTR12A LTR ERVK 1 69 -499 2 883 242 297 68 19 chr6 39149070 39149173 -110367864 + RLTR12A LTR ERVK 122 229 -299 2 883 253 259 259 0 chr6 39149408 39149489 -110367548 - PB1D10 SINE Alu -11 106 5 2 883 210 274 59 0 chr6 39149450 39149501 -110367536 - B4A SINE B4 -164 128 75 2 883 226 0 0 154 chr6 39149520 39149572 -110367465 + T-rich Low_complexity Low_complexity 2 45 0 2 883 527 194 28 28 chr6 39149586 39149692 -110367345 - B1_Mur1 SINE Alu 0 149 44 2 883 217 0 61 0 chr6 39149703 39149736 -110367301 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 2 883 1256 92 0 37 chr6 39149909 39150100 -110366937 + B2_Mm2 SINE B2 2 185 -10 2 883 377 267 120 60 chr6 39150339 39150538 -110366499 + MIR SINE MIR 51 254 -14 3 883 489 248 61 15 chr6 39150684 39150815 -110366222 + B1F SINE Alu 13 149 0 3 883 274 191 0 113 chr6 39150826 39150897 -110366140 + ID4_ SINE ID 5 67 -16 3 883 387 0 0 0 chr6 39150900 39150943 -110366094 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 883 230 247 82 0 chr6 39150968 39151053 -110365984 + L2 LINE L2 2712 2803 -616 3 883 234 74 56 0 chr6 39151651 39151705 -110365332 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 3 883 1110 35 42 14 chr6 39151709 39151852 -110365185 - B1_Mus1 SINE Alu 0 148 2 3 883 670 209 0 0 chr6 39151885 39152014 -110365023 - B1_Mur3 SINE Alu 0 149 21 3 883 332 198 9 142 chr6 39151920 39152026 -110365011 - MT2B LTR ERVL -337 264 173 3 883 310 238 33 0 chr6 39152031 39152163 -110364874 - L1ME1 LINE L1 -353 5887 5750 3 883 32 43 0 0 chr6 39152629 39152675 -110364362 + AT_rich Low_complexity Low_complexity 1 46 0 3 883 1137 82 7 0 chr6 39152687 39152833 -110364204 + B1_Mus2 SINE Alu 1 147 0 3 883 243 0 0 0 chr6 39152996 39153023 -110364014 + (A)n Simple_repeat Simple_repeat 1 27 0 3 883 911 93 70 0 chr6 39153964 39154093 -110362944 + B1_Mus1 SINE Alu 1 138 -10 3 883 294 329 128 34 chr6 39154358 39154407 -110362630 + B4A SINE B4 32 94 -198 3 883 675 215 19 100 chr6 39154407 39154567 -110362470 + B1_Mm SINE Alu 1 147 0 3 883 222 200 0 20 chr6 39154585 39154636 -110362401 + B4A SINE B4 32 81 -211 3 883 32 0 0 0 chr6 39155753 39155785 -110361252 + GC_rich Low_complexity Low_complexity 1 32 0 3 883 242 250 0 0 chr6 39156564 39156624 -110360413 + (CCG)n Simple_repeat Simple_repeat 3 62 0 3 883 354 80 0 0 chr6 39156734 39156784 -110360253 + (CGG)n Simple_repeat Simple_repeat 1 50 0 3 883 206 194 29 15 chr6 39156789 39156857 -110360180 + (CG)n Simple_repeat Simple_repeat 1 69 0 3 883 180 0 0 0 chr6 39157560 39157580 -110359457 + (CTCTG)n Simple_repeat Simple_repeat 4 23 0 3 883 189 0 0 0 chr6 39157948 39157969 -110359068 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 3 883 307 261 36 0 chr6 39158471 39158575 -110358462 + L1MC4 LINE L1 6439 6555 -1487 3 883 291 285 184 50 chr6 39158637 39158855 -110358182 + L1MC4 LINE L1 6711 6957 -1085 3 883 1177 75 0 0 chr6 39158886 39159033 -110358004 + B1_Mus2 SINE Alu 1 147 0 3 883 240 86 0 0 chr6 39159033 39159068 -110357969 + (A)n Simple_repeat Simple_repeat 1 35 0 3 883 351 0 0 0 chr6 39159115 39159154 -110357883 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 883 369 0 0 0 chr6 39159154 39159194 -110357843 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 883 354 288 42 59 chr6 39159199 39159317 -110357720 - RSINE1 SINE B4 -47 118 3 3 883 280 197 40 0 chr6 39159393 39159469 -110357568 + L1MC4 LINE L1 7238 7316 -726 3 883 216 271 281 25 chr6 39159885 39160006 -110357031 + MIR SINE MIR 45 196 -66 3 883 656 236 50 0 chr6 39160144 39160284 -110356753 + RSINE1 SINE B4 3 149 -16 3 883 302 45 23 0 chr6 39160295 39160339 -110356698 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 883 1084 131 0 11 chr6 39160484 39160661 -110356376 - B2_Mm2 SINE B2 -19 176 2 3 883 520 249 296 4 chr6 39160763 39160989 -110356048 + B4A SINE B4 1 292 0 3 883 528 221 57 9 chr6 39161018 39161123 -110355914 - PB1D9 SINE Alu -9 111 2 3 883 761 191 32 0 chr6 39161317 39161443 -110355594 - B1_Mur1 SINE Alu -14 135 6 3 883 306 288 0 14 chr6 39161541 39161615 -110355422 + tRNA-Ala-GCY_ tRNA tRNA 1 73 -2 3 883 418 296 101 59 chr6 39161776 39162063 -110354974 + L3 LINE CR1 2594 2892 -1597 3 883 960 233 11 5 chr6 39162157 39162347 -110354690 - B3A SINE B2 -6 192 2 3 883 902 168 14 0 chr6 39162373 39162516 -110354521 - B1_Mur4 SINE Alu 0 150 6 3 883 619 300 0 26 chr6 39163121 39163275 -110353762 + RSINE1 SINE B4 2 151 -14 3 883 260 53 0 26 chr6 39163277 39163316 -110353721 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 883 23 0 0 0 chr6 39163316 39163339 -110353698 + AT_rich Low_complexity Low_complexity 1 23 0 3 883 391 268 124 47 chr6 39163394 39163523 -110353514 - ID_B1 SINE B4 0 224 86 3 883 342 0 0 0 chr6 39163540 39163578 -110353459 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 3 883 720 197 0 15 chr6 39163664 39163798 -110353239 + B1_Mus2 SINE Alu 14 145 -2 3 883 723 221 64 0 chr6 39163849 39163989 -110353048 + B1_Mur2 SINE Alu 1 149 0 3 883 322 354 8 23 chr6 39164024 39164157 -110352880 + ID_B1 SINE B4 82 212 -12 3 883 327 104 0 0 chr6 39164157 39164205 -110352832 + (T)n Simple_repeat Simple_repeat 1 48 0 3 883 731 176 50 17 chr6 39164272 39164451 -110352586 - B3 SINE B2 -11 182 1 3 883 950 43 6 173 chr6 39164465 39164633 -110352404 - B1_Mus2 SINE Alu -6 141 2 3 883 748 159 37 22 chr6 39164892 39165027 -110352010 + B1_Mus2 SINE Alu 11 147 0 3 883 435 240 42 0 chr6 39165059 39165155 -110351882 + RSINE1 SINE B4 44 143 -22 3 883 270 250 0 30 chr6 39165171 39165237 -110351800 + C-rich Low_complexity Low_complexity 5 68 0 3 883 261 224 221 14 chr6 39165277 39165422 -110351615 + HAL1 LINE L1 2226 2400 -107 3 883 240 227 0 0 chr6 39165507 39165551 -110351486 + MLT2B3 LTR ERVL 3 46 -508 3 883 632 283 159 58 chr6 39165736 39166044 -110350993 + MTEa LTR MaLR 40 378 -1 3 883 538 192 8 42 chr6 39166905 39167028 -110350009 + PB1D9 SINE Alu 2 120 0 3 883 499 303 26 0 chr6 39167262 39167417 -110349620 + ID_B1 SINE B4 14 172 -52 3 883 1161 148 34 53 chr6 39167551 39167758 -110349279 + B3 SINE B2 2 204 -12 3 883 486 268 262 14 chr6 39167875 39168108 -110348929 + B4A SINE B4 2 292 0 3 883 270 300 0 0 chr6 39168258 39168318 -110348719 + RSINE1 SINE B4 3 62 -103 3 883 249 200 200 0 chr6 39168324 39168399 -110348638 + B3 SINE B2 127 216 0 3 883 392 248 118 16 chr6 39168451 39168578 -110348459 + ID_B1 SINE B4 64 203 -21 3 883 222 260 0 0 chr6 39168660 39168710 -110348327 + PB1D10 SINE Alu 33 82 -35 3 883 389 284 11 0 chr6 39168982 39169070 -110347967 + ID_B1 SINE B4 105 193 -31 3 883 547 291 20 0 chr6 39169180 39169328 -110347709 - RSINE1 SINE B4 -12 153 3 3 883 227 217 0 16 chr6 39170096 39170157 -110346880 + GA-rich Low_complexity Low_complexity 5 64 0 3 883 1096 106 6 50 chr6 39170201 39170380 -110346657 + B2_Mm1t SINE B2 1 171 -22 3 883 726 96 0 0 chr6 39170383 39170487 -110346550 + (GAAA)n Simple_repeat Simple_repeat 1 104 0 3 883 461 259 50 41 chr6 39170526 39170647 -110346390 + RSINE1 SINE B4 2 123 -42 3 883 390 42 0 0 chr6 39170649 39170697 -110346340 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 883 267 226 141 12 chr6 39170776 39170861 -110346176 - PB1 SINE Alu -2 125 30 3 883 870 141 22 15 chr6 39170885 39171022 -110346015 + B1_Mus1 SINE Alu 5 142 -6 3 883 477 0 0 0 chr6 39171023 39171076 -110345961 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 3 883 610 271 23 12 chr6 39171076 39171248 -110345789 - Arthur1 DNA Tip100 -390 3557 3384 3 883 441 0 0 0 chr6 39171423 39171472 -110345565 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 883 435 226 0 12 chr6 39171530 39171615 -110345422 - RSINE1 SINE B4 -69 96 13 3 883 224 322 21 75 chr6 39171539 39171633 -110345404 - B3A SINE B2 -109 89 1 3 883 288 130 0 0 chr6 39171633 39171679 -110345358 + (TCTCCC)n Simple_repeat Simple_repeat 3 48 0 3 883 265 32 0 0 chr6 39171684 39171715 -110345322 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 883 717 189 18 0 chr6 39171715 39171884 -110345153 + (TA)n Simple_repeat Simple_repeat 2 173 0 3 883 394 232 6 3 chr6 39171886 39171981 -110345056 - PB1D10 SINE Alu -115 196 16 3 883 384 310 23 8 chr6 39172005 39172135 -110344902 - Arthur1 DNA Tip100 -946 3001 2870 3 883 602 293 23 42 chr6 39172135 39172349 -110344688 + ID_B1 SINE B4 2 211 -13 3 883 1030 283 35 99 chr6 39172405 39172498 -110344539 + MLT1F2 LTR MaLR 2 89 -471 3 883 342 0 0 0 chr6 39172498 39172536 -110344501 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 883 1030 296 62 83 chr6 39172536 39172853 -110344184 + MLT1F2 LTR MaLR 90 491 -189 3 883 243 224 0 0 chr6 39172908 39172957 -110344080 + MLT1F2 LTR MaLR 500 548 0 3 883 419 229 36 128 chr6 39172961 39173259 -110343778 + MER63C DNA AcHobo 41 371 -559 3 883 1807 183 118 32 chr6 39173301 39173674 -110343363 - MTD LTR MaLR -14 405 1 3 883 597 344 26 45 chr6 39173688 39173956 -110343081 - Arthur1 DNA Tip100 -3563 384 122 3 883 541 283 38 38 chr6 39173976 39174134 -110342903 - RSINE1 SINE B4 -5 160 3 3 883 947 146 207 6 chr6 39174164 39174343 -110342694 - B3 SINE B2 -1 215 1 3 883 331 294 22 0 chr6 39174369 39174461 -110342576 - Arthur1 DNA Tip100 -3841 106 13 3 883 312 266 77 36 chr6 39175074 39175141 -110341896 + RLTR21 LTR ERVK 1078 1145 -427 3 883 828 264 118 19 chr6 39175141 39175404 -110341633 - B4A SINE B4 -2 290 2 3 883 312 266 77 36 chr6 39175404 39175504 -110341533 + RLTR21 LTR ERVK 1146 1251 -321 3 883 548 327 19 37 chr6 39175474 39175636 -110341401 - RSINE1 SINE B4 0 165 7 3 883 697 118 8 8 chr6 39177005 39177125 -110339912 + (TCC)n Simple_repeat Simple_repeat 1 120 0 3 883 684 64 43 0 chr6 39177160 39177254 -110339783 + B1_Mus2 SINE Alu 43 140 -7 3 883 879 134 0 0 chr6 39177257 39177399 -110339638 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 3 883 1124 72 0 0 chr6 39177459 39177598 -110339439 + B1_Mus1 SINE Alu 5 143 -5 3 883 534 257 49 14 chr6 39177710 39177852 -110339185 + B1F SINE Alu 1 147 -2 3 883 452 213 97 115 chr6 39177893 39178114 -110338923 + MTEa LTR MaLR 39 248 -131 3 883 436 344 62 56 chr6 39177923 39178243 -110338794 + MLT2B5 LTR ERVL 70 391 -210 3 883 219 108 62 0 chr6 39178243 39178308 -110338729 + T-rich Low_complexity Low_complexity 2 70 0 4 883 713 237 45 23 chr6 39178386 39178563 -110338474 - B3A SINE B2 -16 182 2 4 883 891 70 0 0 chr6 39179147 39179261 -110337776 - B2_Mm2 SINE B2 -80 115 2 4 883 966 87 65 7 chr6 39179265 39179404 -110337633 - B1_Mur2 SINE Alu -1 148 2 4 883 667 229 27 59 chr6 39179593 39179779 -110337258 + B3 SINE B2 37 216 0 4 883 373 310 40 80 chr6 39180264 39180513 -110336524 - L1MEc LINE L1 -5485 915 677 4 883 976 194 44 10 chr6 39180533 39180736 -110336301 - B3 SINE B2 -6 210 1 4 883 335 344 103 29 chr6 39180736 39181017 -110336020 - L1MEc LINE L1 -5714 686 385 4 883 386 101 81 19 chr6 39181022 39181183 -110335854 + (CA)n Simple_repeat Simple_repeat 2 172 0 4 883 34 55 0 0 chr6 39181212 39181267 -110335770 + AT_rich Low_complexity Low_complexity 1 55 0 4 883 499 202 0 55 chr6 39181440 39181550 -110335487 - B1F2 SINE Alu -1 148 45 4 883 326 74 19 0 chr6 39181554 39181608 -110335429 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 4 883 295 264 165 0 chr6 39181696 39181787 -110335250 - PB1D10 SINE Alu -1 116 11 4 883 708 232 90 0 chr6 39181719 39181874 -110335163 - ID_B1 SINE B4 -54 170 2 4 883 766 179 203 50 chr6 39181991 39182173 -110334864 - B3 SINE B2 0 216 7 4 883 645 49 0 0 chr6 39182924 39183005 -110334032 + (GA)n Simple_repeat Simple_repeat 1 81 0 4 883 315 0 0 0 chr6 39183174 39183209 -110333828 + (GTTTG)n Simple_repeat Simple_repeat 2 36 0 4 883 240 35 0 0 chr6 39183227 39183256 -110333781 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 883 1050 86 7 0 chr6 39183256 39183396 -110333641 - B1_Mus2 SINE Alu -6 141 1 4 883 1005 208 50 59 chr6 39183571 39183791 -110333246 + ID_B1 SINE B4 5 222 -2 4 883 245 184 0 75 chr6 39183812 39183865 -110333172 + ID4_ SINE ID 25 73 -10 4 883 470 245 45 9 chr6 39184023 39184134 -110332903 - PB1D10 SINE Alu -2 115 1 4 883 1034 157 147 0 chr6 39184159 39184356 -110332681 - URR1A DNA MER1_type 0 226 1 4 883 1056 233 23 161 chr6 39184538 39184978 -110332059 - MTE2a LTR MaLR 0 379 1 4 883 473 293 98 0 chr6 39184993 39185126 -110331911 + RSINE1 SINE B4 3 148 -17 4 883 294 29 0 0 chr6 39185133 39185168 -110331869 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 883 351 264 230 36 chr6 39185185 39185350 -110331687 + B3A SINE B2 1 197 -1 4 883 1023 73 0 0 chr6 39185365 39185502 -110331535 + (GGAGAA)n Simple_repeat Simple_repeat 3 139 0 4 883 286 187 128 39 chr6 39185859 39185937 -110331100 - L2c LINE L2 -10 3377 3293 4 883 306 320 30 0 chr6 39185955 39186055 -110330982 + B1F1 SINE Alu 42 144 -5 4 883 360 0 0 0 chr6 39186055 39186095 -110330942 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 883 202 227 0 0 chr6 39186095 39186139 -110330898 + GA-rich Low_complexity Low_complexity 1 44 0 4 883 533 252 99 0 chr6 39186139 39186270 -110330767 + B4A SINE B4 2 145 -147 4 883 315 49 0 0 chr6 39186280 39186321 -110330716 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 883 185 111 0 53 chr6 39186324 39186362 -110330675 + GA-rich Low_complexity Low_complexity 3 38 0 4 883 451 357 74 60 chr6 39186381 39186572 -110330465 - B4 SINE B4 -2 290 83 4 883 1655 158 139 32 chr6 39186572 39186918 -110330119 + ORR1C2 LTR MaLR 1 383 -1 4 883 451 357 74 60 chr6 39186918 39187009 -110330028 - B4 SINE B4 -210 82 4 4 883 231 88 0 0 chr6 39187034 39187068 -110329969 + (TTG)n Simple_repeat Simple_repeat 3 36 0 4 883 287 281 160 23 chr6 39187069 39187200 -110329837 - RSINE1 SINE B4 -12 153 5 4 883 279 0 0 0 chr6 39187223 39187254 -110329783 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 4 883 538 241 24 1 chr6 39187254 39187363 -110329674 - B1_Mur2 SINE Alu -12 137 24 4 883 418 227 114 35 chr6 39188162 39188276 -110328761 + B1F SINE Alu 3 125 -24 4 883 281 212 0 0 chr6 39188282 39188348 -110328689 - RSINE1 SINE B4 -98 67 2 4 883 235 234 0 0 chr6 39188349 39188396 -110328641 + MER53 DNA hAT 133 179 -14 4 883 1556 39 0 0 chr6 39188465 39188643 -110328394 - B2_Mm1t SINE B2 -14 179 2 4 883 658 247 26 7 chr6 39190260 39190415 -110326622 - RSINE1 SINE B4 -6 159 2 4 884 872 157 7 28 chr6 39190598 39190742 -110326295 + B1_Mur4 SINE Alu 2 142 -8 4 884 293 303 84 55 chr6 39190856 39191003 -110326034 + MIRb SINE MIR 61 209 -53 4 884 223 242 0 42 chr6 39191020 39191115 -110325922 + (ATGGTG)n Simple_repeat Simple_repeat 2 92 0 4 884 520 227 9 0 chr6 39191262 39191372 -110325665 - PB1D9 SINE Alu -9 111 1 4 884 276 53 0 0 chr6 39192016 39192054 -110324983 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 4 884 656 278 62 14 chr6 39192057 39192265 -110324772 - ID_B1 SINE B4 -6 218 1 4 884 922 148 0 20 chr6 39192510 39192662 -110324375 - B1_Mur4 SINE Alu -1 149 1 4 884 701 278 22 34 chr6 39192753 39192932 -110324105 - B3A SINE B2 -16 182 6 4 884 210 325 58 35 chr6 39193731 39193903 -110323134 - L2c LINE L2 -82 3305 3130 4 884 732 258 22 6 chr6 39194584 39194767 -110322270 + B4A SINE B4 2 187 -105 4 884 648 273 104 33 chr6 39194855 39195192 -110321845 + L1MC4 LINE L1 7231 7601 -441 4 884 512 311 6 12 chr6 39195452 39195615 -110321422 + RSINE1 SINE B4 2 163 -2 4 884 274 143 42 14 chr6 39195615 39195686 -110321351 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 4 884 1281 27 0 0 chr6 39195719 39195865 -110321172 - B1_Mm SINE Alu 0 147 2 4 884 274 266 35 44 chr6 39195916 39196030 -110321007 + L1MC4 LINE L1 7920 8032 -10 4 884 401 230 248 0 chr6 39197347 39197524 -110319513 - ID_B1 SINE B4 -2 222 2 4 884 1310 109 16 5 chr6 39197640 39197833 -110319204 - B2_Mm2 SINE B2 0 195 1 4 884 29 0 0 0 chr6 39197843 39197872 -110319165 + AT_rich Low_complexity Low_complexity 1 29 0 4 884 433 274 96 7 chr6 39197895 39198031 -110319006 - RSINE1 SINE B4 -17 148 1 4 884 474 238 74 0 chr6 39198066 39198188 -110318849 + ID_B1 SINE B4 87 217 -7 4 884 327 289 208 15 chr6 39198202 39198373 -110318664 - MIRb SINE MIR -48 220 20 4 884 290 272 136 0 chr6 39198377 39198458 -110318579 - RMER30 DNA MER1_type 0 202 111 4 884 539 269 163 58 chr6 39198469 39198726 -110318311 + B4A SINE B4 2 285 -7 4 884 503 162 0 0 chr6 39199271 39199351 -110317686 - RMER30 DNA MER1_type -116 86 7 4 884 446 239 116 107 chr6 39199603 39199921 -110317116 + RMER10A LTR ERVL 122 442 0 4 884 2060 231 103 105 chr6 39199921 39200119 -110316918 - RCHARR1 DNA MER1_type -150 824 611 4 884 1054 215 0 41 chr6 39200119 39200337 -110316700 + B3 SINE B2 2 210 -6 4 884 2060 231 103 105 chr6 39200337 39200464 -110316573 - RCHARR1 DNA MER1_type -364 610 496 4 884 869 146 21 0 chr6 39200464 39200608 -110316429 - B1_Mus2 SINE Alu 0 147 1 4 884 2060 231 103 105 chr6 39200608 39200805 -110316232 - RCHARR1 DNA MER1_type -479 495 309 4 884 824 232 58 10 chr6 39200805 39201010 -110316027 - ID_B1 SINE B4 -8 216 2 4 884 2060 231 103 105 chr6 39201010 39201203 -110315834 - RCHARR1 DNA MER1_type -666 308 109 4 884 2473 110 14 53 chr6 39201327 39201741 -110315296 - RMER10B LTR ERVL 0 398 1 4 884 4281 148 97 62 chr6 39201870 39202724 -110314313 + RMER19B LTR ERVK 4 887 -15 4 884 1295 21 0 0 chr6 39202725 39202869 -110314168 + B1_Mm SINE Alu 2 145 -2 4 884 276 137 0 0 chr6 39202888 39202939 -110314098 + (A)n Simple_repeat Simple_repeat 1 51 0 4 884 350 187 60 90 chr6 39203102 39203202 -110313835 + PB1D10 SINE Alu 21 117 0 4 884 195 42 0 0 chr6 39203292 39203316 -110313721 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 884 297 0 0 0 chr6 39203543 39203576 -110313461 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 884 1431 57 23 0 chr6 39203576 39203752 -110313285 - B2_Mm2 SINE B2 -15 180 1 4 884 901 246 94 53 chr6 39203886 39204204 -110312833 - MLT1C LTR MaLR -95 372 42 4 884 2199 99 19 3 chr6 39204204 39204518 -110312519 + ORR1A2 LTR MaLR 1 319 -8 4 884 262 246 197 71 chr6 39204587 39204699 -110312338 + ID_B1 SINE B4 82 210 -14 4 884 813 160 21 0 chr6 39204699 39204843 -110312194 + B1_Mus2 SINE Alu 1 147 0 4 884 262 246 197 71 chr6 39204843 39204857 -110312180 + ID_B1 SINE B4 211 224 0 4 884 542 244 192 6 chr6 39205175 39205352 -110311685 + B3 SINE B2 2 211 -5 4 884 196 287 81 40 chr6 39205526 39205647 -110311390 + MIRb SINE MIR 117 244 -24 4 884 615 245 28 0 chr6 39206128 39206271 -110310766 + B1F1 SINE Alu 1 147 -2 4 884 378 0 0 0 chr6 39207640 39207682 -110309355 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 884 387 0 0 0 chr6 39207682 39207724 -110309313 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 884 192 276 17 0 chr6 39207991 39208049 -110308988 - MIR SINE MIR -112 96 38 4 884 259 57 0 0 chr6 39208172 39208207 -110308830 - B1_Mus2 SINE Alu -1 146 112 4 884 295 284 0 13 chr6 39208282 39208357 -110308680 - ID_B1 SINE B4 -21 203 130 4 884 279 336 87 0 chr6 39208287 39208391 -110308646 - B1F SINE Alu -29 120 8 4 884 1186 235 48 119 chr6 39208370 39208532 -110308505 - ORR1D2 LTR MaLR -19 351 204 4 884 1084 82 0 52 chr6 39208532 39208687 -110308350 - B1_Mus1 SINE Alu 0 148 2 4 884 1186 235 48 119 chr6 39208687 39208901 -110308136 - ORR1D2 LTR MaLR -167 203 2 4 884 885 132 8 0 chr6 39209081 39209210 -110307827 - B1_Mur3 SINE Alu -18 131 2 4 884 842 123 49 35 chr6 39209534 39209677 -110307360 + B1_Mur4 SINE Alu 5 149 -1 4 884 186 43 0 0 chr6 39209677 39209700 -110307337 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 884 737 246 92 19 chr6 39209915 39210144 -110306893 + MER33 DNA MER1_type 5 238 -86 4 884 1264 112 37 0 chr6 39210146 39210333 -110306704 + B2_Mm2 SINE B2 2 195 0 4 884 31 44 0 0 chr6 39210335 39210380 -110306657 + AT_rich Low_complexity Low_complexity 1 45 0 5 884 759 209 116 22 chr6 39210574 39210755 -110306282 + B3A SINE B2 1 198 0 5 884 525 250 0 18 chr6 39210831 39210945 -110306092 + PB1D7 SINE Alu 9 120 0 5 884 672 256 18 18 chr6 39210954 39211117 -110305920 + B3A SINE B2 2 164 -34 5 884 213 65 0 0 chr6 39211120 39211151 -110305886 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 884 374 245 112 0 chr6 39211177 39211275 -110305762 + RSINE1 SINE B4 36 144 -21 5 884 996 81 19 0 chr6 39211387 39211548 -110305489 + (GGA)n Simple_repeat Simple_repeat 3 166 0 5 884 656 263 62 21 chr6 39211549 39211743 -110305294 + ID_B1 SINE B4 5 206 -18 5 884 382 126 169 25 chr6 39212335 39212453 -110304584 - B2_Mm2 SINE B2 0 195 46 5 884 1273 81 29 0 chr6 39212500 39212674 -110304363 - B2_Mm2 SINE B2 -15 180 2 5 884 608 266 117 134 chr6 39212675 39212944 -110304093 - RLTR12B LTR ERVK -29 499 247 5 884 1805 99 227 21 chr6 39212944 39213274 -110303763 + RMER10B LTR ERVL 1 398 0 5 884 608 266 117 134 chr6 39213274 39213465 -110303572 - RLTR12B LTR ERVK -282 246 47 5 884 268 296 111 12 chr6 39213613 39213766 -110303271 - MIR SINE MIR -56 212 38 5 884 180 0 0 0 chr6 39214762 39214782 -110302255 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 884 228 319 31 41 chr6 39214957 39215055 -110301982 + RLTR25B LTR ERVK 481 577 -451 5 884 363 234 47 0 chr6 39215393 39215497 -110301540 - B1F SINE Alu -5 115 7 5 884 974 93 12 12 chr6 39215537 39215700 -110301337 + (TTC)n Simple_repeat Simple_repeat 3 165 0 5 884 405 202 122 11 chr6 39215726 39215816 -110301221 + PB1D9 SINE Alu 21 120 0 5 884 540 161 86 0 chr6 39215848 39215941 -110301096 - U6 snRNA snRNA -6 101 1 5 884 233 308 37 46 chr6 39216149 39216258 -110300779 - LTR33A_ LTR ERVL -90 441 334 5 884 327 49 0 0 chr6 39216278 39216319 -110300718 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 5 884 714 151 76 0 chr6 39216610 39216729 -110300308 + B1_Mur3 SINE Alu 10 137 -12 5 884 329 0 34 51 chr6 39216729 39216788 -110300249 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 5 884 366 80 0 0 chr6 39216974 39217024 -110300013 + (TTATA)n Simple_repeat Simple_repeat 2 51 0 5 884 486 243 146 28 chr6 39217024 39217145 -110299892 + RSINE1 SINE B4 5 143 -22 5 884 225 0 0 0 chr6 39217145 39217170 -110299867 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 5 884 486 243 146 28 chr6 39217170 39217192 -110299845 + RSINE1 SINE B4 144 165 0 5 884 234 100 75 0 chr6 39217567 39217607 -110299430 + B1_Mur3 SINE Alu 87 129 -20 5 884 326 43 43 0 chr6 39217619 39217666 -110299371 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 5 884 512 239 9 26 chr6 39217689 39217805 -110299232 + PB1D9 SINE Alu 6 119 -1 5 884 969 246 5 0 chr6 39217823 39218043 -110298994 + ID_B1 SINE B4 4 224 0 5 884 186 43 0 0 chr6 39218262 39218285 -110298752 + (CAT)n Simple_repeat Simple_repeat 2 24 0 5 884 605 164 82 0 chr6 39218285 39218395 -110298642 - PB1D9 SINE Alu -1 119 1 5 884 274 347 0 0 chr6 39219545 39219620 -110297417 - MER91A DNA Tip100 -3 193 119 5 884 220 250 0 0 chr6 39219680 39219740 -110297297 + C-rich Low_complexity Low_complexity 3 62 0 5 884 243 274 14 14 chr6 39219929 39220003 -110297034 + Lx8 LINE L1 7150 7223 -250 5 884 372 77 0 0 chr6 39220062 39220114 -110296923 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 884 298 292 63 17 chr6 39220409 39220583 -110296454 + L1MC4 LINE L1 7303 7484 -558 5 884 582 241 22 22 chr6 39220586 39220722 -110296315 + B3A SINE B2 60 195 -3 5 884 459 0 0 0 chr6 39220776 39220827 -110296210 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 884 471 189 132 0 chr6 39220913 39221019 -110296018 + PB1D7 SINE Alu 1 120 0 5 884 713 295 72 89 chr6 39221036 39221080 -110295957 + MER31B LTR ERV1 6 50 -416 5 884 720 243 0 0 chr6 39221080 39221220 -110295817 - B1_Mur1 SINE Alu -9 140 1 5 884 713 295 72 89 chr6 39221220 39221290 -110295747 + MER31B LTR ERV1 51 108 -358 5 884 1806 183 20 52 chr6 39221290 39221698 -110295339 - RMER10B LTR ERVL -1 397 3 5 884 713 295 72 89 chr6 39221698 39222010 -110295027 + MER31B LTR ERV1 109 426 -40 5 884 310 296 111 0 chr6 39222070 39222178 -110294859 + PB1D7 SINE Alu 1 120 0 5 884 867 145 74 58 chr6 39222183 39222373 -110294664 - B2_Mm2 SINE B2 -1 194 2 5 884 516 261 69 0 chr6 39222860 39222990 -110294047 + B1_Mur1 SINE Alu 5 143 -6 5 884 28 29 0 0 chr6 39222990 39223025 -110294012 + AT_rich Low_complexity Low_complexity 1 35 0 5 884 496 296 24 36 chr6 39223166 39223331 -110293706 + RSINE1 SINE B4 3 165 0 5 884 686 222 7 46 chr6 39223374 39223525 -110293512 - ID_B1 SINE B4 0 224 80 5 884 374 253 21 42 chr6 39223540 39223635 -110293402 - B3 SINE B2 -4 212 120 5 884 322 48 0 0 chr6 39223633 39223675 -110293362 - B2_Mm2 SINE B2 -153 42 1 5 884 430 194 0 120 chr6 39224088 39224205 -110292832 + MT2B LTR ERVL 155 257 -344 5 884 737 191 0 0 chr6 39224103 39224229 -110292808 + B1_Mus1 SINE Alu 2 127 -21 5 884 23 0 0 0 chr6 39224273 39224296 -110292741 + AT_rich Low_complexity Low_complexity 1 23 0 5 884 389 265 64 29 chr6 39224348 39224488 -110292549 + ID_B1 SINE B4 67 211 -13 5 884 943 214 23 50 chr6 39224492 39224713 -110292324 + B3 SINE B2 2 216 0 5 884 602 218 81 0 chr6 39224720 39224844 -110292193 + B1_Mur2 SINE Alu 6 139 -10 5 884 235 216 297 0 chr6 39224937 39225011 -110292026 - RSINE1 SINE B4 -7 158 63 5 884 372 247 212 35 chr6 39225016 39225247 -110291790 - HAL1 LINE L1 -968 1539 1268 5 884 441 252 10 0 chr6 39225284 39225387 -110291650 - PB1D7 SINE Alu 0 120 17 5 884 277 300 0 107 chr6 39225306 39225418 -110291619 - ID_B1 SINE B4 -48 176 77 5 884 694 135 25 31 chr6 39225450 39225610 -110291427 + (TATG)n Simple_repeat Simple_repeat 3 161 0 5 884 626 256 23 16 chr6 39225610 39225794 -110291243 - B3A SINE B2 -13 203 19 5 884 1069 39 0 0 chr6 39225908 39226038 -110290999 - B1_Mm SINE Alu 0 147 18 5 884 491 286 0 36 chr6 39226039 39226177 -110290860 - ID_B1 SINE B4 0 224 92 5 884 279 0 0 0 chr6 39226711 39226742 -110290295 + (T)n Simple_repeat Simple_repeat 1 31 0 5 884 2603 192 37 30 chr6 39226813 39227464 -110289573 - RLTR31_Mm LTR ERVK 0 561 2 5 884 1438 87 0 15 chr6 39227553 39227751 -110289286 - B2_Mm2 SINE B2 0 195 1 5 884 579 81 0 0 chr6 39227772 39227858 -110289179 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 884 526 158 97 206 chr6 39227866 39227976 -110289061 - B3A SINE B2 -42 156 34 5 884 835 240 71 5 chr6 39227976 39228173 -110288864 + B3 SINE B2 1 210 -6 5 884 526 158 97 206 chr6 39228173 39228237 -110288800 - B3A SINE B2 -165 33 1 5 884 617 149 9 0 chr6 39229469 39229583 -110287454 + GA-rich Low_complexity Low_complexity 5 119 0 5 884 183 42 0 0 chr6 39229594 39229618 -110287419 + (CAGC)n Simple_repeat Simple_repeat 2 25 0 5 884 885 203 87 15 chr6 39230090 39230285 -110286752 + B3 SINE B2 1 209 -7 5 884 584 263 174 54 chr6 39230403 39230737 -110286300 + MLT1C LTR MaLR 18 391 -76 5 884 680 183 15 30 chr6 39230742 39230877 -110286160 + B1_Mur1 SINE Alu 2 134 -15 5 884 552 100 0 0 chr6 39230879 39230959 -110286078 + (TAGA)n Simple_repeat Simple_repeat 4 83 0 5 884 930 90 241 0 chr6 39230990 39231135 -110285902 + B2_Mm2 SINE B2 2 181 -14 5 884 397 233 53 119 chr6 39231258 39231409 -110285628 + B1F2 SINE Alu 3 143 -6 5 884 1554 48 0 11 chr6 39231425 39231616 -110285421 - B2_Mm1a SINE B2 -3 190 2 5 884 192 273 53 35 chr6 39232031 39232088 -110284949 - MIRb SINE MIR -79 189 132 5 884 413 271 68 23 chr6 39232645 39232777 -110284260 - MLT1B LTR MaLR -42 348 211 5 884 833 84 231 31 chr6 39232994 39233154 -110283883 + B2_Mm1t SINE B2 2 193 0 5 884 706 167 82 77 chr6 39233214 39233409 -110283628 + B3A SINE B2 2 197 -1 5 884 621 206 19 0 chr6 39233409 39233516 -110283521 + B1_Mur1 SINE Alu 2 110 -39 5 884 454 273 9 18 chr6 39233717 39233829 -110283208 + ID_B1 SINE B4 82 192 -32 5 884 381 295 33 0 chr6 39233814 39233936 -110283101 + MLT2B1 LTR ERVL 442 567 0 5 884 2744 120 30 26 chr6 39234720 39235147 -110281890 - RLTR23 LTR ERV1 -1 429 1 5 884 529 237 17 17 chr6 39235318 39235434 -110281603 + B1F SINE Alu 34 149 0 5 884 494 241 25 33 chr6 39235437 39235557 -110281480 + PB1D9 SINE Alu 1 119 -1 5 884 684 229 1 1 chr6 39235577 39235706 -110281331 + ID_B1 SINE B4 87 217 -75 5 884 189 0 0 0 chr6 39235706 39235727 -110281310 + (ATG)n Simple_repeat Simple_repeat 3 23 0 5 884 271 289 86 66 chr6 39235727 39235749 -110281288 + B4A SINE B4 218 244 -48 5 884 990 194 120 0 chr6 39235750 39235941 -110281096 + ID_B1 SINE B4 4 217 -7 5 884 186 150 0 0 chr6 39236370 39236410 -110280627 + (G)n Simple_repeat Simple_repeat 1 40 0 5 884 803 225 5 57 chr6 39237108 39237301 -110279736 + B3A SINE B2 1 183 -15 5 884 186 43 0 0 chr6 39237303 39237326 -110279711 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 5 884 25 0 0 0 chr6 39237326 39237351 -110279686 + AT_rich Low_complexity Low_complexity 1 25 0 5 884 697 222 133 16 chr6 39237353 39237541 -110279496 + B3 SINE B2 1 210 -6 5 884 1306 115 0 20 chr6 39237543 39237738 -110279299 - B2_Mm2 SINE B2 -2 193 3 5 884 279 304 0 0 chr6 39238243 39238299 -110278738 + ID4_ SINE ID 25 80 -3 5 884 581 226 38 70 chr6 39238463 39238620 -110278417 + RSINE1 SINE B4 3 154 -11 6 884 264 209 5 0 chr6 39238679 39238738 -110278299 + PB1D7 SINE Alu 1 60 -89 6 884 821 270 62 59 chr6 39238740 39239079 -110277958 + RLTR15 LTR ERVK 4 343 -16 6 884 281 173 0 55 chr6 39239075 39239130 -110277907 + PB1D10 SINE Alu 43 94 -23 6 884 487 239 0 0 chr6 39239088 39239176 -110277861 + ID_B1 SINE B4 134 221 -3 6 884 674 250 73 28 chr6 39239273 39239450 -110277587 - ID_B1 SINE B4 -8 216 32 6 884 227 263 0 0 chr6 39239403 39239460 -110277577 - ID4 SINE ID -6 77 21 6 884 774 236 0 7 chr6 39239492 39239641 -110277396 - B1_Mur1 SINE Alu 0 149 2 6 884 233 264 53 70 chr6 39239657 39239771 -110277266 - L1MB5 LINE L1 -8 6166 6055 6 884 625 296 82 27 chr6 39239813 39240070 -110276967 + MLT1J LTR MaLR 101 371 -141 6 884 1019 297 138 45 chr6 39240610 39241124 -110275913 + Lx9 LINE L1 6567 7128 -516 6 884 183 129 0 0 chr6 39241158 39241189 -110275848 + (GGA)n Simple_repeat Simple_repeat 2 32 0 6 884 682 255 0 0 chr6 39241405 39241554 -110275483 - B1F2 SINE Alu 0 149 1 6 884 180 0 0 0 chr6 39242175 39242195 -110274842 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 884 1137 170 5 0 chr6 39242204 39242392 -110274645 - B3 SINE B2 -27 189 1 6 884 272 229 71 135 chr6 39242747 39242888 -110274149 + LTR37A LTR ERV1 13 144 -282 6 884 380 343 0 19 chr6 39242904 39243011 -110274026 - ID_B1 SINE B4 -39 185 81 6 884 3108 134 73 6 chr6 39243085 39243525 -110273512 + RLTR20D LTR ERVK 1 463 -105 6 884 1251 41 0 7 chr6 39243525 39243673 -110273364 + B1_Mm SINE Alu 1 147 0 6 884 387 0 0 0 chr6 39243680 39243723 -110273314 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 884 3108 134 73 6 chr6 39243723 39243806 -110273231 + RLTR20D LTR ERVK 477 568 0 6 884 341 245 10 10 chr6 39243810 39243909 -110273128 + LTR37A LTR ERV1 226 324 -102 6 884 26 50 0 0 chr6 39243920 39243960 -110273077 + AT_rich Low_complexity Low_complexity 1 40 0 6 884 526 316 31 25 chr6 39244018 39244177 -110272860 - RSINE1 SINE B4 -2 163 4 6 884 840 214 149 5 chr6 39244219 39244407 -110272630 - B3 SINE B2 0 216 2 6 884 892 49 195 0 chr6 39244448 39244571 -110272466 - B1_Mus1 SINE Alu -1 147 1 6 884 1731 16 0 0 chr6 39244643 39244835 -110272202 + B2_Mm1a SINE B2 2 193 0 6 884 532 246 40 40 chr6 39245078 39245226 -110271811 - B1_Mur2 SINE Alu -1 148 1 6 884 457 240 61 53 chr6 39245226 39245358 -110271679 - ID_B1 SINE B4 -67 157 25 6 884 366 221 53 2 chr6 39245365 39245462 -110271575 - B1F1 SINE Alu -40 109 1 6 884 286 333 43 0 chr6 39245508 39245625 -110271412 - MIR SINE MIR -43 219 98 6 884 336 293 27 89 chr6 39245684 39245830 -110271207 + MER117 DNA MER1_type 25 161 -36 6 884 483 18 0 0 chr6 39246410 39246466 -110270571 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 884 218 250 0 0 chr6 39246512 39246556 -110270481 + CT-rich Low_complexity Low_complexity 1 44 0 6 884 1098 157 34 19 chr6 39246556 39246764 -110270273 - B3 SINE B2 -1 215 5 6 884 215 291 12 48 chr6 39246822 39246905 -110270132 - ID4 SINE ID -2 81 2 6 884 849 290 16 24 chr6 39246991 39247242 -110269795 - B4A SINE B4 -23 269 21 6 884 321 311 37 9 chr6 39247258 39247365 -110269672 - PB1D7 SINE Alu -8 112 3 6 884 897 100 0 0 chr6 39247447 39247577 -110269460 + (TTTTC)n Simple_repeat Simple_repeat 1 130 0 6 884 634 171 26 18 chr6 39247675 39247788 -110269249 + B3 SINE B2 1 114 -102 6 884 241 290 86 0 chr6 39248092 39248185 -110268852 + ORR1E LTR MaLR 1 101 -258 6 884 1287 140 10 10 chr6 39248185 39248394 -110268643 + URR1B DNA MER1_type 1 209 -16 6 884 235 239 0 0 chr6 39248430 39248476 -110268561 + ORR1E LTR MaLR 280 325 -54 6 884 342 0 0 0 chr6 39248476 39248514 -110268523 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 6 884 1024 25 0 0 chr6 39248514 39248634 -110268403 - B1_Mm SINE Alu -11 136 17 6 884 427 217 8 102 chr6 39248538 39248656 -110268381 - MT2B LTR ERVL -337 264 158 6 884 496 244 43 92 chr6 39248670 39248855 -110268182 - MTEa LTR MaLR -3 376 201 6 884 440 138 45 15 chr6 39248855 39248987 -110268050 + (CAGA)n Simple_repeat Simple_repeat 1 136 0 6 884 713 269 64 15 chr6 39249013 39249217 -110267820 - MTEa LTR MaLR -165 214 1 6 884 6773 104 77 17 chr6 39249381 39250438 -110266599 + Lx2B LINE L1 5858 6977 -23 6 884 1506 49 5 11 chr6 39250438 39250624 -110266413 - B2_Mm1a SINE B2 -7 186 2 6 884 618 205 27 0 chr6 39250729 39250841 -110266196 - ID_B1 SINE B4 -6 218 104 6 884 375 287 60 30 chr6 39250841 39250862 -110266175 - B1_Mus1 SINE Alu -6 142 6 6 884 296 309 27 23 chr6 39250868 39250964 -110266073 - PB1D10 SINE Alu -21 99 1 6 884 457 65 0 0 chr6 39251235 39251297 -110265740 - B1_Mus1 SINE Alu -86 62 1 6 884 206 98 49 0 chr6 39251428 39251469 -110265568 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 6 884 343 211 52 101 chr6 39251487 39251603 -110265434 + MLT1E2 LTR MaLR 1 111 -394 6 884 1360 237 50 6 chr6 39252162 39252485 -110264552 + Lx6 LINE L1 7098 7434 -26 6 884 298 328 91 16 chr6 39252551 39252672 -110264365 - ID_B1 SINE B4 -2 222 93 6 884 277 177 32 16 chr6 39252676 39252739 -110264298 - MER5A1 DNA MER1_type -87 79 16 6 884 476 252 68 8 chr6 39252820 39252952 -110264085 + B1_Mur3 SINE Alu 5 144 -5 6 884 267 136 0 0 chr6 39252953 39253012 -110264025 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 6 884 599 194 180 0 chr6 39253015 39253154 -110263883 + B3 SINE B2 37 200 -16 6 884 297 259 143 19 chr6 39253195 39253300 -110263737 + PB1D10 SINE Alu 1 127 0 6 884 953 184 36 26 chr6 39253400 39253595 -110263442 + B3 SINE B2 20 216 0 6 884 360 260 0 14 chr6 39253619 39253693 -110263344 + ID_B1 SINE B4 85 157 -67 6 884 701 208 8 0 chr6 39253694 39253819 -110263218 + B1_Mur1 SINE Alu 2 127 -22 6 884 431 86 0 0 chr6 39253819 39253877 -110263160 + B1F SINE Alu 70 127 -22 6 884 380 121 0 0 chr6 39253844 39253902 -110263135 + B1_Mm SINE Alu 64 121 -26 6 884 503 151 0 0 chr6 39253901 39253974 -110263063 + B1_Mur1 SINE Alu 65 137 -12 6 884 490 266 38 23 chr6 39254073 39254204 -110262833 - RSINE1 SINE B4 -28 137 5 6 884 24 53 0 0 chr6 39254206 39254244 -110262793 + AT_rich Low_complexity Low_complexity 1 38 0 6 884 440 204 13 51 chr6 39255155 39255403 -110261634 + GA-rich Low_complexity Low_complexity 1 238 0 6 884 1452 44 0 0 chr6 39255403 39255583 -110261454 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 6 884 440 168 22 55 chr6 39255583 39255616 -110261421 + polypurine Low_complexity Low_complexity 149 179 0 6 884 717 240 56 24 chr6 39256090 39256303 -110260734 - ID_B1 SINE B4 -4 220 1 6 884 568 116 0 34 chr6 39256332 39256421 -110260616 - B1_Mus2 SINE Alu -2 145 60 6 884 208 170 19 19 chr6 39256456 39256510 -110260527 + CT-rich Low_complexity Low_complexity 2 55 0 6 884 45 34 0 0 chr6 39256512 39256571 -110260466 + AT_rich Low_complexity Low_complexity 1 59 0 6 884 817 220 71 0 chr6 39256571 39256753 -110260284 - B3A SINE B2 -3 195 1 6 884 323 127 0 68 chr6 39256759 39256818 -110260219 + B1F1 SINE Alu 95 149 0 6 884 444 225 60 37 chr6 39257303 39257437 -110259600 + MLT1A0 LTR MaLR 9 145 -220 6 884 255 297 14 0 chr6 39257448 39257522 -110259515 + RSINE1 SINE B4 3 77 -88 6 884 2309 90 3 61 chr6 39257835 39258180 -110258857 + ORR1A4 LTR MaLR 1 325 -4 6 884 1159 134 109 38 chr6 39258606 39258816 -110258221 - URR1B DNA MER1_type 0 225 1 6 884 328 238 44 71 chr6 39258977 39259090 -110257947 - B3 SINE B2 0 216 107 6 884 554 229 0 8 chr6 39259190 39259309 -110257728 + B3A SINE B2 2 119 -79 6 884 561 270 167 0 chr6 39260055 39260259 -110256778 + ORR1E LTR MaLR 1 238 -121 6 884 309 241 62 12 chr6 39260461 39260541 -110256496 + ORR1E LTR MaLR 294 377 -2 6 884 916 117 7 0 chr6 39260613 39260750 -110256287 - URR1B DNA MER1_type 0 225 88 6 884 550 224 144 27 chr6 39260614 39260802 -110256235 + CYRA11_Mm Unknown Y-chromosome 172 381 -236 6 884 462 245 139 19 chr6 39260936 39261094 -110255943 - ID_B1 SINE B4 0 224 48 6 884 1502 57 5 30 chr6 39261128 39261326 -110255711 - B2_Mm1a SINE B2 0 193 1 6 884 540 217 27 45 chr6 39262136 39262247 -110254790 - PB1D10 SINE Alu -6 111 3 6 884 615 191 7 13 chr6 39262814 39262968 -110254069 + GA-rich Low_complexity Low_complexity 3 155 0 6 884 336 279 9 28 chr6 39262968 39263075 -110253962 + HAL1-3A_ME LINE L1 2284 2388 -470 6 884 186 167 0 0 chr6 39263316 39263352 -110253685 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 884 217 277 0 0 chr6 39263376 39263423 -110253614 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 884 454 250 53 3 chr6 39263482 39263620 -110253417 + B3A SINE B2 1 152 -41 6 884 3426 128 54 13 chr6 39263620 39264302 -110252735 - RMER6A LTR ERVK 0 756 1 6 884 272 278 161 26 chr6 39264438 39264593 -110252444 - L5 LINE RTE -200 2065 1890 6 884 429 180 29 29 chr6 39264995 39265098 -110251939 + MLT1C LTR MaLR 57 159 -308 6 884 324 189 78 0 chr6 39265109 39265219 -110251818 - ID_B1 SINE B4 -8 216 6 6 884 483 255 7 84 chr6 39265230 39265380 -110251657 - B1F SINE Alu -15 133 1 6 884 669 139 72 0 chr6 39265510 39265676 -110251361 + GA-rich Low_complexity Low_complexity 3 180 0 6 884 347 134 317 0 chr6 39265685 39265767 -110251270 + B1_Mus1 SINE Alu 40 147 -1 7 884 1009 123 6 6 chr6 39265806 39265977 -110251060 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 7 884 1223 43 0 0 chr6 39265977 39266118 -110250919 + B1_Mus1 SINE Alu 2 142 -6 7 884 726 12 0 0 chr6 39266120 39266203 -110250834 + (GA)n Simple_repeat Simple_repeat 2 84 0 7 884 660 250 13 19 chr6 39266606 39266765 -110250272 - RSINE1 SINE B4 0 165 8 7 884 502 219 107 129 chr6 39266921 39267111 -110249926 + L1MB4 LINE L1 5585 5784 -396 7 884 978 219 19 5 chr6 39267111 39267322 -110249715 + B3 SINE B2 2 215 -1 7 884 502 219 107 129 chr6 39267322 39267441 -110249596 + L1MB4 LINE L1 5785 5887 -293 7 884 499 279 34 0 chr6 39267798 39267945 -110249092 - ID_B1 SINE B4 -70 154 3 7 884 201 143 0 0 chr6 39269050 39269085 -110247952 + (C)n Simple_repeat Simple_repeat 1 35 0 7 884 1623 26 5 10 chr6 39269716 39269910 -110247127 + B2_Mm1t SINE B2 1 193 0 7 884 701 175 0 16 chr6 39269927 39270049 -110246988 + B1_Mur4 SINE Alu 23 142 -8 7 884 334 91 0 52 chr6 39270049 39270107 -110246930 + B1_Mur4 SINE Alu 96 150 0 7 884 283 85 16 33 chr6 39270118 39270179 -110246858 + (CAAAAA)n Simple_repeat Simple_repeat 4 63 0 7 884 522 296 50 39 chr6 39270952 39271131 -110245906 + B3 SINE B2 1 181 -35 7 884 213 39 0 0 chr6 39271131 39271157 -110245880 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 7 884 990 98 28 0 chr6 39271269 39271412 -110245625 + B1_Mur3 SINE Alu 2 148 -1 7 884 197 33 33 0 chr6 39271417 39271447 -110245590 + (TAAAAA)n Simple_repeat Simple_repeat 4 34 0 7 884 753 296 70 29 chr6 39271865 39272307 -110244730 + L1MB8 LINE L1 4293 4752 -1394 7 884 317 202 0 71 chr6 39272416 39272501 -110244536 - RSINE1 SINE B4 0 165 87 7 884 591 312 57 30 chr6 39272556 39272817 -110244220 - MER74A LTR ERVL -78 480 213 7 884 270 340 21 31 chr6 39272817 39272914 -110244123 - MER2B DNA MER2_type -1 335 240 7 884 207 100 0 0 chr6 39273013 39273043 -110243994 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 7 884 679 220 166 22 chr6 39273111 39273292 -110243745 + B3 SINE B2 1 207 -9 7 884 329 313 51 17 chr6 39273628 39273735 -110243302 - MER74A LTR ERVL -435 187 75 7 884 1268 27 0 13 chr6 39273735 39273884 -110243153 + B1_Mus2 SINE Alu 1 147 0 7 884 221 173 0 36 chr6 39273893 39273977 -110243060 + A-rich Low_complexity Low_complexity 1 81 0 7 884 316 285 29 21 chr6 39274047 39274187 -110242850 + L1MB8 LINE L1 5874 6014 -164 7 884 2267 90 15 45 chr6 39274261 39274598 -110242439 + IAPLTR2b LTR ERVK 1 327 0 7 884 307 51 0 0 chr6 39274600 39274639 -110242398 - tRNA-Phe-TTY tRNA tRNA 0 76 38 7 884 2987 20 2 176 chr6 39274639 39275111 -110241926 - RLTR10 LTR ERVK 0 390 1 7 884 280 196 126 10 chr6 39275143 39275246 -110241791 + L1M4 LINE L1 5736 5850 -328 7 884 989 136 0 0 chr6 39275268 39275408 -110241629 - B1_Mus1 SINE Alu -7 141 2 7 884 591 266 23 0 chr6 39275437 39275565 -110241472 - ID_B1 SINE B4 -8 216 86 7 884 227 305 65 112 chr6 39275438 39275608 -110241429 + YREP_Mm Unknown Unknown 186 347 -1465 7 884 495 216 30 30 chr6 39275669 39275769 -110241268 - PB1D7 SINE Alu -12 108 9 7 884 215 216 0 0 chr6 39276071 39276108 -110240929 + ID2 SINE ID 18 54 -29 7 884 510 255 7 46 chr6 39276367 39276384 -110240653 + ID_B1 SINE B4 77 222 -2 7 884 838 141 15 0 chr6 39276384 39276519 -110240518 + B1_Mur4 SINE Alu 13 149 -1 7 884 469 180 67 48 chr6 39276596 39276701 -110240336 + PB1D9 SINE Alu 6 112 -8 7 884 256 279 202 0 chr6 39276701 39276725 -110240312 + B4 SINE B4 91 245 -47 7 884 243 0 0 0 chr6 39276768 39276795 -110240242 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 884 21 0 0 0 chr6 39276795 39276816 -110240221 + AT_rich Low_complexity Low_complexity 1 21 0 7 884 991 80 72 7 chr6 39277248 39277386 -110239651 + B1_Mus2 SINE Alu 1 147 0 7 884 344 248 0 19 chr6 39277386 39277493 -110239544 + GA-rich Low_complexity Low_complexity 4 108 0 7 884 294 315 83 9 chr6 39277529 39277638 -110239399 + PB1D10 SINE Alu 1 117 0 7 884 369 292 129 7 chr6 39277662 39277817 -110239220 + L3 LINE CR1 4190 4363 -126 7 884 314 316 10 21 chr6 39277855 39277952 -110239085 + ID_B1 SINE B4 81 176 -48 7 884 471 242 11 0 chr6 39277871 39277966 -110239071 + PB1D10 SINE Alu 14 109 -8 7 884 227 344 170 48 chr6 39277988 39278153 -110238884 + B4 SINE B4 1 185 -107 7 884 320 78 39 0 chr6 39278160 39278211 -110238826 + (GAAA)n Simple_repeat Simple_repeat 1 53 0 7 884 684 194 13 65 chr6 39278366 39278520 -110238517 + B1_Mus1 SINE Alu 3 148 0 7 884 200 111 0 77 chr6 39279593 39279632 -110237405 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 884 478 181 170 9 chr6 39279979 39280085 -110236952 - RSINE1 SINE B4 -41 124 2 7 884 233 184 46 26 chr6 39280402 39280467 -110236570 + B1_Mur4 SINE Alu 1 59 -90 7 884 671 187 241 0 chr6 39280653 39280790 -110236247 + B3 SINE B2 1 177 -39 7 884 410 0 0 20 chr6 39280790 39280841 -110236196 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 884 671 187 241 0 chr6 39280841 39280869 -110236168 + B3 SINE B2 178 205 -11 7 884 1140 211 117 19 chr6 39281399 39281717 -110235320 - MTD LTR MaLR -8 411 7 7 884 238 195 0 0 chr6 39281714 39281755 -110235282 - B3 SINE B2 -69 147 107 7 884 600 227 0 0 chr6 39282876 39283052 -110233985 + (CA)n Simple_repeat Simple_repeat 1 176 0 7 884 3972 80 6 4 chr6 39283132 39283648 -110233389 + L1_Mus1 LINE L1 6051 6567 0 7 884 203 136 22 22 chr6 39283677 39283722 -110233315 + A-rich Low_complexity Low_complexity 2 46 0 7 884 243 88 0 0 chr6 39283728 39283762 -110233275 + (A)n Simple_repeat Simple_repeat 1 34 0 7 884 1205 82 75 17 chr6 39283813 39283986 -110233051 + B2_Mm2 SINE B2 4 186 -9 7 884 960 133 0 27 chr6 39284061 39284208 -110232829 + B1_Mus2 SINE Alu 5 147 0 7 884 374 290 26 0 chr6 39284487 39284612 -110232425 + B1F SINE Alu 1 133 -16 7 884 514 264 127 117 chr6 39284909 39284997 -110232040 - B4A SINE B4 -5 287 224 7 884 830 213 68 16 chr6 39284997 39285188 -110231849 - B3 SINE B2 -14 202 2 7 884 514 264 127 117 chr6 39285188 39285382 -110231655 - B4A SINE B4 -69 223 2 7 884 471 327 71 45 chr6 39287771 39287995 -110229042 - B4A SINE B4 -56 236 7 7 884 490 204 108 0 chr6 39288084 39288177 -110228860 - PB1D10 SINE Alu -5 112 10 7 884 409 292 10 0 chr6 39288106 39288202 -110228835 - ID_B1 SINE B4 -63 161 65 7 884 393 240 258 59 chr6 39288865 39289051 -110227986 + ID_B1 SINE B4 2 224 0 7 884 619 209 16 0 chr6 39289114 39289243 -110227794 + B3 SINE B2 86 216 0 7 884 228 143 71 0 chr6 39289336 39289378 -110227659 - PB1D10 SINE Alu -15 102 58 7 884 292 316 75 37 chr6 39289836 39289997 -110227040 - B4A SINE B4 -17 275 109 7 884 680 235 14 49 chr6 39290219 39290362 -110226675 - B1F SINE Alu -2 147 10 7 884 646 275 101 103 chr6 39290366 39290584 -110226453 - L1MB5 LINE L1 -202 5972 5762 7 884 5109 58 8 3 chr6 39290584 39291221 -110225816 - L1Md_F2 LINE L1 0 6582 5943 7 884 646 275 101 103 chr6 39291221 39291440 -110225597 - L1MB5 LINE L1 -413 5761 5536 7 884 259 281 16 0 chr6 39291453 39291517 -110225520 - B3 SINE B2 -27 189 125 7 884 304 233 135 48 chr6 39291538 39291664 -110225373 - L1MB5 LINE L1 -683 5491 5355 7 884 646 261 70 14 chr6 39291668 39291882 -110225155 - L1MB5 LINE L1 -1082 5064 4839 7 884 469 147 277 25 chr6 39292205 39292324 -110224713 - B1_Mur4 SINE Alu 0 150 2 7 884 238 229 214 63 chr6 39292211 39292337 -110224700 - B4 SINE B4 -69 223 79 7 884 378 224 284 67 chr6 39292343 39292377 -110224660 - RSINE1 SINE B4 0 165 130 7 884 261 0 0 0 chr6 39292377 39292406 -110224631 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 884 378 224 284 67 chr6 39292406 39292505 -110224532 - RSINE1 SINE B4 -36 129 3 7 884 761 279 98 28 chr6 39292572 39292929 -110224108 - L1MB8 LINE L1 -67 6111 5730 7 884 330 261 120 4 chr6 39293049 39293116 -110223921 + ID_B1 SINE B4 11 92 -132 7 884 307 255 138 0 chr6 39293116 39293210 -110223827 + PB1D10 SINE Alu 1 107 -10 7 884 634 253 38 12 chr6 39293248 39293408 -110223629 + RSINE1 SINE B4 2 165 0 7 884 378 0 0 0 chr6 39293549 39293591 -110223446 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 884 243 0 0 0 chr6 39294916 39294943 -110222094 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 884 675 37 0 0 chr6 39297535 39297617 -110219420 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 7 884 189 0 0 0 chr6 39298139 39298160 -110218877 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 7 884 311 306 35 21 chr6 39298685 39298824 -110218213 - MIR SINE MIR -92 176 28 7 884 1126 102 101 6 chr6 39300556 39300734 -110216303 + B2_Mm2 SINE B2 1 195 0 7 884 285 280 121 50 chr6 39301453 39301652 -110215385 - L1MC LINE L1 -2054 5828 5616 7 884 24 32 0 0 chr6 39301783 39301814 -110215223 + AT_rich Low_complexity Low_complexity 1 31 0 7 884 271 254 0 0 chr6 39302527 39302586 -110214451 + B1F2 SINE Alu 2 60 -89 7 884 389 241 43 43 chr6 39303030 39303147 -110213890 + PB1D10 SINE Alu 1 117 0 7 884 506 181 119 7 chr6 39303519 39303642 -110213395 + B1F2 SINE Alu 2 130 -19 7 884 430 165 186 0 chr6 39303670 39303767 -110213270 + B1_Mur1 SINE Alu 35 149 0 7 884 381 301 188 51 chr6 39305215 39305471 -110211566 + B4 SINE B4 2 292 0 7 884 267 31 0 0 chr6 39305498 39305530 -110211507 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 884 337 278 31 0 chr6 39305875 39305972 -110211065 + L1ME1 LINE L1 5904 6003 -176 7 884 291 204 19 0 chr6 39306208 39306262 -110210775 + ZP3AR Satellite Satellite 28 82 -130 7 884 582 42 0 0 chr6 39306222 39306293 -110210744 + BC1_Mm scRNA scRNA 1 71 -81 8 884 232 231 60 71 chr6 39306293 39306306 -110210731 + B3 SINE B2 1 83 -133 8 884 201 39 0 0 chr6 39306309 39306335 -110210702 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 8 884 1023 110 27 0 chr6 39306873 39307019 -110210018 + B1_Mur4 SINE Alu 1 150 0 8 884 23 0 0 0 chr6 39307151 39307174 -110209863 + AT_rich Low_complexity Low_complexity 1 23 0 8 884 395 258 72 13 chr6 39307207 39307360 -110209677 - RSINE1 SINE B4 -1 164 3 8 884 830 219 139 0 chr6 39308356 39308543 -110208494 + B3 SINE B2 1 213 -3 8 884 687 184 34 34 chr6 39308546 39308692 -110208345 + B1_Mur2 SINE Alu 3 148 -1 8 884 21 0 0 0 chr6 39308693 39308714 -110208323 + AT_rich Low_complexity Low_complexity 1 21 0 8 884 1262 92 35 0 chr6 39308725 39308898 -110208139 + B2_Mm1t SINE B2 1 179 -14 8 884 306 159 0 39 chr6 39308945 39309012 -110208025 + B2_Mm2 SINE B2 47 109 -107 8 884 189 0 0 0 chr6 39309028 39309049 -110207988 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 8 884 696 229 0 0 chr6 39309149 39309315 -110207722 + GA-rich Low_complexity Low_complexity 4 169 0 8 884 345 82 0 0 chr6 39309357 39309406 -110207631 + (CGGAA)n Simple_repeat Simple_repeat 2 50 0 8 884 180 0 0 0 chr6 39309406 39309426 -110207611 + (GAAAA)n Simple_repeat Simple_repeat 5 24 0 8 884 1365 96 0 11 chr6 39309431 39309621 -110207416 + B2_Mm2 SINE B2 2 189 -6 8 884 343 265 119 84 chr6 39309627 39309878 -110207159 + L1MC5 LINE L1 7496 7755 -206 8 884 1183 61 0 13 chr6 39310460 39310609 -110206428 + B1_Mus1 SINE Alu 1 147 -1 8 884 800 228 117 6 chr6 39310625 39310803 -110206234 + B3 SINE B2 2 180 -36 8 884 563 175 16 48 chr6 39311044 39311170 -110205867 + RSINE1 SINE B4 44 165 0 8 884 1006 98 55 39 chr6 39311186 39311205 -110205832 - B2_Mm2 SINE B2 -10 185 171 8 884 288 0 0 0 chr6 39311205 39311237 -110205800 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 8 884 1006 98 55 39 chr6 39311237 39311398 -110205639 - B2_Mm2 SINE B2 -25 170 2 8 884 392 252 116 80 chr6 39311418 39311556 -110205481 - B3A SINE B2 0 198 56 8 884 836 113 17 237 chr6 39311556 39311788 -110205249 + B2_Mm2 SINE B2 1 181 -14 8 884 241 273 133 83 chr6 39311788 39311804 -110205233 - B3 SINE B2 -161 55 38 8 884 350 175 0 5 chr6 39311854 39311919 -110205118 + B2_Mm2 SINE B2 47 109 -107 8 884 24 0 0 0 chr6 39311933 39311957 -110205080 + AT_rich Low_complexity Low_complexity 1 24 0 8 884 485 183 10 0 chr6 39311959 39312063 -110204974 + GA-rich Low_complexity Low_complexity 2 106 0 8 884 249 160 80 0 chr6 39312063 39312113 -110204924 - B2_Mm2 SINE B2 -141 54 1 8 884 266 200 237 72 chr6 39312245 39312256 -110204781 + ID_B1 SINE B4 77 186 -35 8 884 326 169 337 0 chr6 39312256 39312339 -110204698 + B1F1 SINE Alu 2 112 -37 8 884 223 268 39 78 chr6 39312407 39312484 -110204553 + ID SINE ID 2 75 -149 8 884 263 239 15 0 chr6 39312558 39312625 -110204412 + MER68 LTR ERVL 7 74 -489 8 884 719 238 313 0 chr6 39312699 39312993 -110204044 + MER68 LTR ERVL 178 563 0 8 884 232 196 0 21 chr6 39313140 39313187 -110203850 + RSINE1 SINE B4 61 106 -59 8 884 558 284 83 0 chr6 39313303 39313472 -110203565 + B3A SINE B2 1 183 -15 8 884 461 29 162 0 chr6 39313517 39313585 -110203452 + B2_Mm1t SINE B2 100 178 -15 8 884 993 152 0 0 chr6 39313585 39313756 -110203281 + GA-rich Low_complexity Low_complexity 2 172 0 8 884 585 213 88 0 chr6 39313761 39313897 -110203140 + B1_Mur3 SINE Alu 1 148 -1 8 884 256 263 53 0 chr6 39313906 39313982 -110203055 + GA-rich Low_complexity Low_complexity 2 81 0 8 884 423 226 93 79 chr6 39313985 39314124 -110202913 + B1_Mur2 SINE Alu 3 143 -6 8 884 252 122 0 0 chr6 39314126 39314167 -110202870 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 884 1210 90 62 11 chr6 39314215 39314394 -110202643 + B2_Mm2 SINE B2 1 188 -7 8 884 910 163 14 0 chr6 39314774 39314921 -110202116 + B1_Mur4 SINE Alu 1 149 -1 8 884 411 320 32 19 chr6 39315230 39315386 -110201651 + RSINE1 SINE B4 2 159 -6 8 884 1713 26 0 0 chr6 39315827 39316020 -110201017 + B2_Mm1t SINE B2 1 193 0 8 884 1326 103 11 0 chr6 39316247 39316432 -110200605 + B2_Mm1t SINE B2 2 188 -5 8 884 751 190 7 21 chr6 39316474 39316619 -110200418 + B1_Mur1 SINE Alu 2 144 -5 8 884 254 323 0 0 chr6 39316660 39316722 -110200315 + tRNA-Ala-GCG tRNA tRNA 5 66 -9 8 884 180 0 0 0 chr6 39316723 39316743 -110200294 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 8 884 1613 27 0 5 chr6 39317073 39317259 -110199778 - B2_Mm1a SINE B2 -8 185 1 8 884 323 221 73 0 chr6 39317277 39317345 -110199692 + ID_B1 SINE B4 77 149 -75 8 884 444 186 26 195 chr6 39317295 39317358 -110199679 + B1F1 SINE Alu 19 67 -82 8 884 1238 35 0 0 chr6 39317358 39317502 -110199535 + B1_Mus1 SINE Alu 5 148 0 8 884 444 186 26 195 chr6 39317502 39317592 -110199445 + B1F1 SINE Alu 68 146 -3 8 884 538 200 207 0 chr6 39318025 39318160 -110198877 + B3 SINE B2 47 209 -7 8 884 278 372 21 0 chr6 39318202 39318296 -110198741 + ID_B1 SINE B4 82 177 -47 8 884 937 196 22 11 chr6 39318509 39318568 -110198469 + ID SINE ID 22 82 -142 8 884 355 243 70 42 chr6 39318568 39318710 -110198327 + B1_Mm SINE Alu 1 146 -1 8 884 1701 26 0 0 chr6 39318726 39318919 -110198118 + B2_Mm1a SINE B2 1 193 0 8 884 1387 68 11 0 chr6 39319015 39319191 -110197846 + B2_Mm1t SINE B2 2 179 -14 8 884 437 80 0 10 chr6 39319223 39319335 -110197702 + B2_Mm2 SINE B2 49 195 0 8 884 620 235 7 14 chr6 39319342 39319480 -110197557 + RSINE1 SINE B4 3 139 -26 8 884 250 226 48 152 chr6 39320030 39320155 -110196882 - PB1D10 SINE Alu -5 112 1 8 884 557 215 95 89 chr6 39320155 39320214 -110196823 - ID SINE ID -154 70 11 8 884 183 129 0 0 chr6 39320216 39320247 -110196790 + (A)n Simple_repeat Simple_repeat 1 31 0 8 884 585 260 0 37 chr6 39320249 39320385 -110196652 - B1_Mur1 SINE Alu -18 131 1 8 884 537 187 212 24 chr6 39320415 39320578 -110196459 + B3 SINE B2 2 212 -4 8 884 653 264 0 0 chr6 39320593 39320722 -110196315 - B1F SINE Alu -20 129 1 8 884 545 249 75 55 chr6 39321027 39321320 -110195717 - L1MA8 LINE L1 0 6291 5993 8 884 574 140 0 39 chr6 39321379 39321483 -110195554 + B1_Mus1 SINE Alu 5 104 -44 8 884 300 27 0 0 chr6 39321483 39321520 -110195517 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 884 189 0 0 0 chr6 39321520 39321541 -110195496 + (GGGTG)n Simple_repeat Simple_repeat 1 21 0 8 885 355 240 55 55 chr6 39321669 39321779 -110195258 - PB1D7 SINE Alu -1 119 10 8 885 200 121 30 0 chr6 39321913 39321946 -110195091 + (CATA)n Simple_repeat Simple_repeat 2 35 0 8 885 1125 80 0 0 chr6 39322486 39322623 -110194414 - B1_Mus1 SINE Alu -10 138 2 8 885 377 333 118 9 chr6 39322893 39323105 -110193932 + L2 LINE L2 1244 1478 -1941 8 885 180 335 82 41 chr6 39323179 39323350 -110193687 + L2 LINE L2 2468 2645 -774 8 885 346 252 37 18 chr6 39323489 39323598 -110193439 + PB1D10 SINE Alu 4 114 -3 8 885 256 199 97 14 chr6 39323902 39323995 -110193042 - ORR1E LTR MaLR -7 372 255 8 885 390 261 93 36 chr6 39324808 39324947 -110192090 + B1_Mur1 SINE Alu 2 148 -1 8 885 1216 64 6 0 chr6 39325016 39325173 -110191864 + B2_Mm1t SINE B2 2 159 -34 8 885 224 185 34 85 chr6 39325216 39325275 -110191762 + ID SINE ID 27 82 -142 8 885 231 259 207 27 chr6 39325941 39326052 -110190985 + B1F2 SINE Alu 11 141 -8 8 885 1069 84 42 0 chr6 39326061 39326203 -110190834 + B1_Mus1 SINE Alu 1 148 0 8 885 228 258 30 15 chr6 39326227 39326294 -110190743 + ID4_ SINE ID 14 81 -2 8 885 353 294 73 9 chr6 39326260 39326370 -110190667 + ID_B1 SINE B4 94 210 -14 8 885 300 27 0 0 chr6 39326380 39326417 -110190620 + (TC)n Simple_repeat Simple_repeat 1 37 0 8 885 279 0 0 0 chr6 39326417 39326447 -110190590 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 885 207 100 0 0 chr6 39328078 39328108 -110188929 + (CATA)n Simple_repeat Simple_repeat 2 31 0 8 885 1578 21 11 16 chr6 39328115 39328305 -110188732 - B2_Mm1a SINE B2 -3 190 2 8 885 1384 28 44 33 chr6 39328338 39328520 -110188517 + B2_Mm1a SINE B2 2 185 -8 8 885 644 204 233 0 chr6 39328521 39328693 -110188344 + B3 SINE B2 1 212 -4 8 885 213 217 22 0 chr6 39328693 39328739 -110188298 + GA-rich Low_complexity Low_complexity 2 48 0 8 885 649 87 0 0 chr6 39328807 39328899 -110188138 + B1_Mm SINE Alu 14 105 -42 8 885 766 196 122 6 chr6 39329186 39329350 -110187687 + B3 SINE B2 29 211 -5 8 885 720 245 79 15 chr6 39329528 39329731 -110187306 + B3 SINE B2 1 216 0 8 885 207 0 0 0 chr6 39330176 39330199 -110186838 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 885 1196 57 0 0 chr6 39330201 39330342 -110186695 - B1_Mus2 SINE Alu -6 141 1 8 885 334 263 105 0 chr6 39330388 39330464 -110186573 - B3A SINE B2 -111 87 4 8 885 446 232 0 21 chr6 39330694 39330791 -110186246 - BC1_Mm scRNA scRNA -54 98 4 8 885 374 292 187 14 chr6 39330858 39330997 -110186040 - RSINE1 SINE B4 0 165 3 8 885 201 111 0 53 chr6 39332190 39332228 -110184809 + G-rich Low_complexity Low_complexity 4 39 0 8 885 336 183 12 112 chr6 39332493 39332573 -110184464 - B4 SINE B4 0 292 221 8 885 23 54 0 0 chr6 39332581 39332618 -110184419 + AT_rich Low_complexity Low_complexity 1 37 0 9 885 949 74 94 22 chr6 39332829 39332953 -110184084 + B1_Mus1 SINE Alu 1 137 -11 9 885 246 32 0 0 chr6 39332953 39332984 -110184053 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 885 949 74 94 22 chr6 39332984 39332997 -110184040 + B1_Mus1 SINE Alu 138 148 0 9 885 336 24 0 0 chr6 39333020 39333061 -110183976 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 885 819 192 0 0 chr6 39333064 39333194 -110183843 - B1_Mur2 SINE Alu -18 131 2 9 885 332 284 167 0 chr6 39333298 39333448 -110183589 + B3A SINE B2 1 177 -21 9 885 1196 48 0 14 chr6 39334345 39334493 -110182544 + B1_Mus1 SINE Alu 3 148 0 9 885 374 169 11 0 chr6 39334494 39334583 -110182454 + (CAAA)n Simple_repeat Simple_repeat 2 91 0 9 885 923 285 38 35 chr6 39334737 39335024 -110182013 + RLTR18 LTR ERVK 1 288 -328 9 885 301 134 92 0 chr6 39335043 39335109 -110181928 - B1_Mus2 SINE Alu -7 113 40 9 885 839 177 0 25 chr6 39335109 39335271 -110181766 + (TCTCTG)n Simple_repeat Simple_repeat 1 158 0 9 885 1090 286 21 49 chr6 39335295 39335622 -110181415 + RLTR18B LTR ERVK 186 503 -9 9 885 410 274 35 9 chr6 39335726 39335840 -110181197 + PB1D7 SINE Alu 1 117 -3 9 885 414 255 0 62 chr6 39336003 39336116 -110180921 + B1F2 SINE Alu 25 130 -19 9 885 327 232 0 0 chr6 39336302 39336358 -110180679 + RSINE1 SINE B4 2 57 -108 9 885 799 255 54 51 chr6 39336331 39336666 -110180371 - RLTR15 LTR ERVK -16 343 8 9 885 359 284 0 0 chr6 39336719 39336793 -110180244 - ID4_ SINE ID 0 83 10 9 885 359 236 57 98 chr6 39336810 39336932 -110180105 - PB1D10 SINE Alu 0 117 1 9 885 628 297 14 0 chr6 39336979 39337117 -110179920 + ID_B1 SINE B4 84 223 -1 9 885 725 213 38 169 chr6 39337127 39337341 -110179696 + B3 SINE B2 2 183 -33 9 885 201 39 0 0 chr6 39337341 39337367 -110179670 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 885 725 213 38 169 chr6 39337367 39337389 -110179648 + B3 SINE B2 184 207 -9 9 885 497 279 88 7 chr6 39337786 39337923 -110179114 - RSINE1 SINE B4 -15 150 3 9 885 892 266 48 4 chr6 39338393 39338623 -110178414 + B4A SINE B4 9 248 -44 9 885 310 214 0 0 chr6 39338813 39338869 -110178168 + ID_B1 SINE B4 163 218 -6 9 885 213 267 16 32 chr6 39338877 39338939 -110178098 + RSINE1 SINE B4 3 63 -102 9 885 1155 88 0 0 chr6 39338939 39339086 -110177951 + B1_Mus2 SINE Alu 1 147 0 9 885 231 36 0 0 chr6 39339214 39339242 -110177795 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 9 885 1177 69 0 0 chr6 39339242 39339387 -110177650 - B1_Mm SINE Alu -2 145 1 9 885 318 268 1 39 chr6 39340781 39340867 -110176170 + MLT1A1 LTR MaLR 289 403 -5 9 885 1138 49 7 0 chr6 39341092 39341236 -110175801 + B1_Mus1 SINE Alu 4 148 0 9 885 570 235 25 8 chr6 39341506 39341626 -110175411 - ID_B1 SINE B4 -13 211 90 9 885 299 312 37 45 chr6 39341626 39341640 -110175397 + YREP_Mm Unknown Unknown 190 322 -1490 9 885 256 302 128 39 chr6 39341647 39341826 -110175211 + B3A SINE B2 2 196 -2 9 885 1736 21 0 0 chr6 39341827 39342020 -110175017 + B2_Mm1a SINE B2 1 193 0 9 885 1148 81 0 7 chr6 39342038 39342187 -110174850 + B1_Mus1 SINE Alu 1 148 0 9 885 742 153 0 37 chr6 39342247 39342383 -110174654 + B1_Mur2 SINE Alu 17 147 -2 9 885 1043 91 21 0 chr6 39342415 39342558 -110174479 + B1_Mus1 SINE Alu 3 148 0 9 885 614 108 0 41 chr6 39342581 39342678 -110174359 + B1_Mur4 SINE Alu 58 150 0 9 885 198 171 0 0 chr6 39342680 39342721 -110174316 + A-rich Low_complexity Low_complexity 4 44 0 9 885 644 286 6 12 chr6 39342955 39343118 -110173919 + RSINE1 SINE B4 4 165 0 9 885 279 298 5 0 chr6 39343118 39343326 -110173711 + (CA)n Simple_repeat Simple_repeat 1 209 0 9 885 214 292 23 117 chr6 39343326 39343338 -110173699 + ID SINE ID 60 71 -153 9 885 679 260 76 10 chr6 39343338 39343536 -110173501 + ID_B1 SINE B4 2 212 -12 9 885 214 292 23 117 chr6 39343536 39343651 -110173386 + ID_B1 SINE B4 72 175 -49 9 885 381 209 54 65 chr6 39343580 39343672 -110173365 + PB1D10 SINE Alu 26 116 -1 9 885 471 218 104 8 chr6 39343688 39343822 -110173215 - B1F2 SINE Alu -1 148 2 9 885 589 197 0 49 chr6 39343822 39343945 -110173092 + B1_Mur4 SINE Alu 34 150 0 9 885 1070 50 7 28 chr6 39344534 39344669 -110172368 + B1_Mus1 SINE Alu 2 136 -12 9 885 618 14 0 0 chr6 39344669 39344740 -110172297 + (GAAA)n Simple_repeat Simple_repeat 3 73 0 9 885 726 9 0 51 chr6 39344740 39344856 -110172181 + (GGGA)n Simple_repeat Simple_repeat 2 112 0 9 885 398 81 32 0 chr6 39344863 39344925 -110172112 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 9 885 369 0 0 0 chr6 39345381 39345422 -110171615 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 885 353 250 73 9 chr6 39345665 39345774 -110171263 + PB1D9 SINE Alu 1 116 -4 9 885 562 228 39 8 chr6 39345911 39346039 -110170998 - B3 SINE B2 -17 199 68 9 885 270 273 50 20 chr6 39346041 39346142 -110170895 - PB1D9 SINE Alu -16 104 1 9 885 330 171 106 64 chr6 39346145 39346239 -110170798 + B1_Mur2 SINE Alu 50 147 -2 9 885 740 177 20 13 chr6 39346686 39346835 -110170202 - B1_Mur4 SINE Alu 0 150 1 9 885 227 227 23 0 chr6 39347041 39347085 -110169952 + PB1D7 SINE Alu 69 113 -7 9 885 690 138 159 97 chr6 39347096 39347237 -110169800 + B2_Mm2 SINE B2 1 161 -34 9 885 1085 97 0 0 chr6 39347237 39347382 -110169655 + B1_Mus2 SINE Alu 3 147 0 9 885 690 138 159 97 chr6 39347382 39347416 -110169621 + B2_Mm2 SINE B2 162 187 -8 9 885 798 172 14 7 chr6 39347427 39347573 -110169464 + B1_Mus2 SINE Alu 1 147 0 9 885 22 0 0 0 chr6 39347800 39347822 -110169215 + AT_rich Low_complexity Low_complexity 1 22 0 9 885 207 0 0 0 chr6 39349518 39349541 -110167496 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 9 885 227 196 0 51 chr6 39351739 39351798 -110165239 + ID_B1 SINE B4 114 169 -55 9 885 899 130 13 70 chr6 39351828 39351985 -110165052 + B1_Mur2 SINE Alu 1 148 -1 9 885 1246 92 11 0 chr6 39351987 39352161 -110164876 + B2_Mm2 SINE B2 1 176 -19 9 885 445 250 8 75 chr6 39352270 39352404 -110164633 + B1F2 SINE Alu 25 149 0 9 885 1652 32 0 0 chr6 39352981 39353170 -110163867 + B2_Mm1a SINE B2 2 190 -3 9 885 564 264 103 6 chr6 39353185 39353360 -110163677 + B3 SINE B2 2 193 -23 9 885 368 321 22 58 chr6 39353412 39353551 -110163486 + RSINE1 SINE B4 1 134 -31 9 885 661 298 73 41 chr6 39353651 39353701 -110163336 + L1MB7 LINE L1 5733 5774 -410 9 885 614 244 143 60 chr6 39353701 39353967 -110163070 + B4A SINE B4 1 288 -4 9 885 661 298 73 41 chr6 39353967 39354406 -110162631 + L1MB7 LINE L1 5775 6184 0 9 885 186 133 0 0 chr6 39354950 39354980 -110162057 + (A)n Simple_repeat Simple_repeat 1 30 0 9 885 409 239 55 9 chr6 39355042 39355152 -110161885 - PB1D10 SINE Alu -2 115 1 9 885 453 243 54 9 chr6 39355155 39355267 -110161770 - PB1D10 SINE Alu 0 117 1 9 885 236 337 22 0 chr6 39355187 39355276 -110161761 - B4A SINE B4 -125 167 77 9 885 366 210 136 0 chr6 39355331 39355412 -110161625 + ID_B1 SINE B4 133 224 0 9 885 405 216 14 0 chr6 39355430 39355504 -110161533 + ID4 SINE ID 2 76 -7 9 885 415 249 56 138 chr6 39356053 39356066 -110160971 - B2_Mm2 SINE B2 -15 180 172 9 885 1083 96 30 65 chr6 39356066 39356267 -110160770 + B2_Mm2 SINE B2 2 195 0 9 885 694 249 56 138 chr6 39356267 39356449 -110160588 - B3A SINE B2 -24 171 1 9 885 520 261 29 44 chr6 39356458 39356594 -110160443 - B1F SINE Alu -10 139 6 9 885 354 312 92 0 chr6 39356765 39356874 -110160163 + PB1 SINE Alu 7 125 -2 9 885 312 194 134 0 chr6 39356895 39356962 -110160075 + B1_Mus1 SINE Alu 27 102 -46 9 885 432 240 41 10 chr6 39357290 39357387 -110159650 + B1_Mur2 SINE Alu 49 148 -1 9 885 342 0 0 0 chr6 39357590 39357628 -110159409 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 885 1371 75 26 5 chr6 39357799 39357988 -110159049 - B2_Mm1a SINE B2 0 193 1 9 885 925 111 90 7 chr6 39358027 39358172 -110158865 + B2_Mm2 SINE B2 2 158 -37 9 885 189 0 0 0 chr6 39358173 39358194 -110158843 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 9 885 313 277 43 43 chr6 39358248 39358365 -110158672 + MER58B DNA MER1_type 122 238 -103 9 885 1221 122 26 5 chr6 39358382 39358572 -110158465 + B2_Mm2 SINE B2 1 194 -1 9 885 567 0 0 0 chr6 39358574 39358637 -110158400 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 9 885 451 235 65 47 chr6 39358871 39358978 -110158059 + RSINE1 SINE B4 2 110 -55 9 885 230 0 33 0 chr6 39358981 39359011 -110158026 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 885 833 64 18 0 chr6 39359011 39359120 -110157917 - PB1D9 SINE Alu -9 111 1 9 885 219 114 0 0 chr6 39359556 39359591 -110157446 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 9 885 237 222 0 0 chr6 39359650 39359713 -110157324 + (TCCA)n Simple_repeat Simple_repeat 3 65 0 9 885 566 242 148 34 chr6 39359760 39359966 -110157071 + MLT1F1 LTR MaLR 5 217 -374 9 885 226 246 138 0 chr6 39360413 39360478 -110156559 - ID4_ SINE ID -9 74 1 9 885 1678 32 0 0 chr6 39361135 39361325 -110155712 + B2_Mm1a SINE B2 2 191 -2 9 885 372 250 70 136 chr6 39361336 39361535 -110155502 + B3A SINE B2 9 194 -1 9 885 217 224 0 171 chr6 39361536 39361606 -110155431 + ID4_ SINE ID 16 73 -10 9 885 249 220 20 0 chr6 39361807 39361857 -110155180 - B1_Mur2 SINE Alu 0 149 99 9 885 260 269 0 0 chr6 39361840 39361892 -110155145 - B1_Mus2 SINE Alu -95 52 1 1 885 871 86 20 61 chr6 39361933 39362081 -110154956 - B1_Mm SINE Alu -5 142 1 1 885 189 0 0 0 chr6 39362222 39362243 -110154794 + (A)n Simple_repeat Simple_repeat 1 21 0 1 885 812 84 61 8 chr6 39362244 39362376 -110154661 + BC1_Mm scRNA scRNA 1 139 -13 1 885 570 250 20 27 chr6 39362455 39362603 -110154434 + B1_Mm SINE Alu 1 147 0 1 885 538 281 26 46 chr6 39362734 39362887 -110154150 + ID_B1 SINE B4 1 150 -74 1 885 1199 114 38 0 chr6 39362905 39363089 -110153948 + B2_Mm1t SINE B2 2 192 -1 1 885 430 107 133 0 chr6 39363122 39363197 -110153840 + B2_Mm2 SINE B2 109 193 -2 1 885 1190 48 7 0 chr6 39363199 39363345 -110153692 + B1_Mus2 SINE Alu 1 147 0 1 885 186 128 0 0 chr6 39363345 39363384 -110153653 + (A)n Simple_repeat Simple_repeat 1 39 0 1 885 196 30 0 57 chr6 39363465 39363500 -110153537 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 885 439 218 84 142 chr6 39363505 39363660 -110153377 + B1_Mus2 SINE Alu 1 146 -1 1 885 498 188 255 7 chr6 39363748 39363893 -110153144 + B3 SINE B2 29 209 -7 1 885 557 283 58 16 chr6 39363908 39364098 -110152939 + B3A SINE B2 1 198 0 1 885 396 115 0 32 chr6 39364109 39364172 -110152865 + B1F1 SINE Alu 87 147 -2 1 885 315 216 27 13 chr6 39364376 39364451 -110152586 + B1_Mur1 SINE Alu 45 149 0 1 885 733 191 13 39 chr6 39364462 39364615 -110152422 + B3A SINE B2 2 150 -48 1 885 748 61 0 10 chr6 39364604 39364704 -110152333 + B1_Mm SINE Alu 37 135 -12 1 885 357 256 8 86 chr6 39364939 39365067 -110151970 + B3A SINE B2 58 175 -23 1 885 1057 88 7 20 chr6 39365241 39365391 -110151646 + B1_Mus1 SINE Alu 1 148 0 1 885 1751 16 0 0 chr6 39365454 39365647 -110151390 + B2_Mm1a SINE B2 1 193 0 1 885 249 31 0 0 chr6 39365647 39365670 -110151367 + (A)n Simple_repeat Simple_repeat 1 23 0 1 885 1750 10 0 0 chr6 39365670 39365862 -110151175 + B2_Mm1a SINE B2 2 193 0 1 885 249 31 0 0 chr6 39365862 39365870 -110151167 + (A)n Simple_repeat Simple_repeat 1 8 0 1 885 769 225 78 21 chr6 39365871 39366062 -110150975 - B3 SINE B2 -7 209 8 1 885 195 234 143 83 chr6 39366148 39366232 -110150805 - L2b LINE L2 -16 3359 3271 1 885 1014 87 58 26 chr6 39366543 39366697 -110150340 - B2_Mm2 SINE B2 -9 186 28 1 885 971 49 0 0 chr6 39366698 39366820 -110150217 - B1_Mus1 SINE Alu 0 148 27 1 885 309 73 0 0 chr6 39366819 39366860 -110150177 - B2_Mm2 SINE B2 -153 42 2 1 885 311 282 14 0 chr6 39366860 39366926 -110150111 + B1_Mur1 SINE Alu 73 139 -10 1 885 230 337 39 19 chr6 39367044 39367147 -110149890 - ID_B1 SINE B4 -44 180 76 1 885 275 261 54 54 chr6 39367359 39367452 -110149585 - B1F1 SINE Alu -29 120 28 1 885 393 22 0 0 chr6 39367650 39367696 -110149341 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 885 657 187 14 35 chr6 39367895 39368039 -110148998 + B1_Mus2 SINE Alu 1 141 -6 1 885 216 0 0 0 chr6 39368179 39368203 -110148834 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 1 885 257 254 55 82 chr6 39368220 39368293 -110148744 + ID_B1 SINE B4 100 170 -54 1 885 210 262 90 101 chr6 39368293 39368309 -110148728 + PB1D10 SINE Alu 19 106 -11 1 885 215 161 0 0 chr6 39368376 39368407 -110148630 + B4 SINE B4 55 85 -207 1 885 599 198 135 0 chr6 39368518 39368644 -110148393 + B1_Mur4 SINE Alu 1 143 -7 1 885 414 250 51 8 chr6 39368854 39368971 -110148066 + B1_Mur2 SINE Alu 28 149 0 1 885 398 238 112 24 chr6 39369209 39369334 -110147703 + B1F1 SINE Alu 4 139 -10 1 885 207 100 0 0 chr6 39370120 39370150 -110146887 + (CCG)n Simple_repeat Simple_repeat 2 31 0 1 885 201 347 0 0 chr6 39370205 39370280 -110146757 + (CCG)n Simple_repeat Simple_repeat 2 76 0 1 885 289 330 8 10 chr6 39370771 39370884 -110146153 + B1F1 SINE Alu 1 118 -2 1 885 357 284 19 78 chr6 39370907 39370958 -110146079 + PB1D10 SINE Alu 7 56 -61 1 885 1851 157 75 39 chr6 39370958 39371342 -110145695 + RMER10B LTR ERVL 1 398 0 1 885 357 284 19 78 chr6 39371342 39371393 -110145644 + PB1D10 SINE Alu 57 103 -14 1 885 232 288 86 12 chr6 39371620 39371701 -110145336 - B1_Mur4 SINE Alu -59 91 5 1 885 1246 48 0 0 chr6 39373573 39373720 -110143317 - B1_Mus2 SINE Alu 0 147 1 1 885 1200 199 24 0 chr6 39373980 39374191 -110142846 - B3 SINE B2 0 216 1 1 885 534 188 0 10 chr6 39374399 39374496 -110142541 + B3A SINE B2 1 96 -102 1 885 188 67 33 0 chr6 39374511 39374541 -110142496 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 885 470 266 11 0 chr6 39374586 39374680 -110142357 + B1_Mur2 SINE Alu 1 95 -54 1 885 744 164 26 79 chr6 39374860 39375012 -110142025 + B1_Mm SINE Alu 1 144 -3 1 885 333 0 0 0 chr6 39375012 39375049 -110141988 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1 885 442 230 90 0 chr6 39375173 39375273 -110141764 - PB1D7 SINE Alu -2 118 10 1 885 221 327 103 36 chr6 39375193 39375358 -110141679 - ID_B1 SINE B4 -48 176 1 1 885 302 261 0 92 chr6 39375509 39375585 -110141452 - PB1D10 SINE Alu -29 88 20 1 885 1969 217 74 49 chr6 39375593 39376146 -110140891 - RMER2 LTR ERV1 0 567 1 1 885 1246 81 11 23 chr6 39376257 39376434 -110140603 + B2_Mm2 SINE B2 15 189 -6 1 885 603 214 34 41 chr6 39376452 39376598 -110140439 - B1_Mur1 SINE Alu 0 149 5 1 885 450 0 0 0 chr6 39376670 39376720 -110140317 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 885 293 208 0 19 chr6 39376721 39376775 -110140262 - PB1D7 SINE Alu 0 120 68 1 885 530 214 37 37 chr6 39376729 39376836 -110140201 - ID_B1 SINE B4 -8 216 110 1 885 278 275 69 81 chr6 39376730 39376904 -110140133 + YREP_Mm Unknown Unknown 186 357 -1455 1 885 222 35 0 0 chr6 39377010 39377023 -110140014 + (T)n Simple_repeat Simple_repeat 1 13 0 1 885 1210 54 7 0 chr6 39377023 39377170 -110139867 - B1_Mus1 SINE Alu 0 148 1 1 885 222 35 0 0 chr6 39377170 39377185 -110139852 + (T)n Simple_repeat Simple_repeat 1 15 0 1 885 215 31 0 30 chr6 39377190 39377223 -110139814 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1 885 296 73 24 0 chr6 39377236 39377277 -110139760 - B1_Mus1 SINE Alu -105 43 2 1 885 1134 108 68 0 chr6 39377277 39377294 -110139743 - B2_Mm1a SINE B2 -5 188 163 1 885 249 57 0 0 chr6 39377294 39377329 -110139708 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 885 1134 108 68 0 chr6 39377329 39377487 -110139550 - B2_Mm1a SINE B2 -31 162 3 1 885 461 283 115 0 chr6 39377584 39377697 -110139340 + ID_B1 SINE B4 95 220 -4 1 885 218 388 33 33 chr6 39378125 39378245 -110138792 - MIR SINE MIR -55 153 34 1 885 189 147 0 0 chr6 39378390 39378424 -110138613 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 885 620 233 108 49 chr6 39378450 39378519 -110138518 + B4 SINE B4 2 80 -212 1 885 621 69 0 0 chr6 39378519 39378606 -110138431 + L1Md_T LINE L1 6496 6582 0 1 885 311 303 43 64 chr6 39378611 39378752 -110138285 + B1F2 SINE Alu 1 138 -11 1 885 448 294 145 29 chr6 39378737 39378944 -110138093 + B4A SINE B4 6 236 -56 1 885 474 18 0 0 chr6 39379084 39379139 -110137898 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 885 258 286 0 31 chr6 39379141 39379206 -110137831 + B4 SINE B4 223 285 -7 1 885 351 0 0 0 chr6 39379314 39379353 -110137684 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 885 405 0 0 0 chr6 39379353 39379397 -110137640 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 885 212 250 45 0 chr6 39379414 39379458 -110137579 - RSINE1 SINE B4 -117 48 3 1 885 366 296 192 35 chr6 39379476 39379679 -110137358 + MER34A LTR ERV1 1 235 -336 1 885 242 196 81 130 chr6 39379782 39379810 -110137227 - BC1_Mm scRNA scRNA -32 120 99 1 885 1093 224 19 0 chr6 39379810 39380015 -110137022 + B3 SINE B2 1 209 -7 1 885 252 196 81 130 chr6 39380015 39380109 -110136928 - ID4_ SINE ID -54 98 4 1 885 760 148 89 0 chr6 39380113 39380248 -110136789 - B1_Mur4 SINE Alu -2 148 2 1 885 1215 61 0 0 chr6 39380302 39380449 -110136588 - B1_Mus1 SINE Alu 0 148 2 1 885 807 200 15 0 chr6 39380464 39380599 -110136438 - B1_Mur1 SINE Alu 0 149 13 1 885 372 211 0 187 chr6 39380482 39380616 -110136421 - MT2B LTR ERVL -326 275 167 1 885 1091 54 0 58 chr6 39380630 39380703 -110136334 + B1_Mus1 SINE Alu 2 71 -77 1 885 1944 117 111 89 chr6 39380703 39381173 -110135864 + RLTR45 LTR ERVK 3 482 0 1 885 1091 54 0 58 chr6 39381173 39381255 -110135782 + B1_Mus1 SINE Alu 72 148 0 1 885 384 175 0 0 chr6 39381255 39381291 -110135746 + A-rich Low_complexity Low_complexity 1 36 0 1 885 1718 26 0 0 chr6 39381291 39381484 -110135553 + B2_Mm1t SINE B2 1 193 0 1 885 384 175 0 0 chr6 39381484 39381527 -110135510 + A-rich Low_complexity Low_complexity 37 79 0 1 885 319 255 52 5 chr6 39381547 39381643 -110135394 - L1M5 LINE L1 -506 5667 5571 1 885 1139 42 14 7 chr6 39381879 39382024 -110135013 + B1_Mus2 SINE Alu 1 146 -1 1 885 311 231 0 25 chr6 39382048 39382128 -110134909 + ID_B1 SINE B4 77 154 -70 1 885 264 214 89 0 chr6 39382139 39382195 -110134842 - B3 SINE B2 -118 98 38 1 885 734 126 124 16 chr6 39382200 39382321 -110134716 + B1_Mur4 SINE Alu 3 136 -14 1 885 201 129 0 0 chr6 39382321 39382352 -110134685 + (G)n Simple_repeat Simple_repeat 1 31 0 1 885 198 118 0 0 chr6 39382676 39382710 -110134327 + (T)n Simple_repeat Simple_repeat 1 34 0 1 885 593 62 12 0 chr6 39382711 39382791 -110134246 - B1_Mus2 SINE Alu -1 146 66 1 885 683 109 18 9 chr6 39382791 39382902 -110134135 - RLTR45 LTR ERVK 0 482 371 1 885 210 37 0 0 chr6 39383045 39383072 -110133965 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 885 23 0 0 0 chr6 39383148 39383171 -110133866 + AT_rich Low_complexity Low_complexity 1 23 0 1 885 592 281 68 7 chr6 39383174 39383321 -110133716 + ID_B1 SINE B4 7 162 -62 1 885 245 294 53 97 chr6 39383247 39383322 -110133715 + B1_Mm SINE Alu 8 81 -66 1 885 1052 222 10 0 chr6 39383322 39383525 -110133512 + B3 SINE B2 1 205 -11 1 885 245 294 53 97 chr6 39383525 39383562 -110133475 + B1_Mm SINE Alu 82 115 -32 1 885 212 0 36 0 chr6 39383757 39383785 -110133252 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 885 195 42 0 0 chr6 39384177 39384201 -110132836 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 885 322 294 119 30 chr6 39384414 39384582 -110132455 + RMER5 LTR ERV1 70 252 -282 1 885 583 175 118 8 chr6 39384615 39384742 -110132295 + B1_Mus2 SINE Alu 5 145 -2 1 885 344 294 136 105 chr6 39384770 39384998 -110132039 + ORR1E LTR MaLR 1 235 -124 1 885 902 147 0 0 chr6 39385837 39385973 -110131064 + B1_Mus1 SINE Alu 5 140 -8 1 885 624 244 0 0 chr6 39386315 39386430 -110130607 + RSINE1 SINE B4 15 129 -36 1 885 625 213 73 7 chr6 39386589 39386726 -110130311 - B1_Mur1 SINE Alu -1 148 3 1 885 432 174 188 83 chr6 39386736 39386880 -110130157 - B2_Mm2 SINE B2 -6 189 31 1 885 1086 82 0 40 chr6 39386880 39387032 -110130005 - B1_Mus1 SINE Alu -1 147 2 1 885 701 288 85 12 chr6 39387080 39387326 -110129711 - RMER5 LTR ERV1 -67 467 204 1 885 669 245 0 40 chr6 39387337 39387486 -110129551 - B1_Mus1 SINE Alu -5 143 1 1 885 246 289 13 63 chr6 39387501 39387558 -110129479 + ORR1E-int LTR MaLR 589 681 -828 1 885 667 138 33 41 chr6 39387563 39387597 -110129440 + PB1D9 SINE Alu 1 34 -86 1 885 2680 78 153 110 chr6 39387597 39388088 -110128949 + RLTR1B LTR ERV1 1 512 0 1 885 246 289 13 63 chr6 39388088 39388150 -110128887 + ORR1E-int LTR MaLR 682 739 -770 1 885 667 138 33 41 chr6 39388150 39388174 -110128863 + PB1D9 SINE Alu 35 120 0 1 885 358 246 196 35 chr6 39388174 39388191 -110128846 + B4A SINE B4 120 246 -46 1 885 269 286 0 0 chr6 39388189 39388252 -110128785 - PB1D9 SINE Alu -12 108 46 1 885 273 57 0 0 chr6 39388292 39388327 -110128710 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 885 191 173 19 0 chr6 39388581 39388633 -110128404 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 885 563 318 58 6 chr6 39388643 39388814 -110128223 - B3A SINE B2 -16 182 3 1 885 21 0 0 0 chr6 39388826 39388847 -110128190 + AT_rich Low_complexity Low_complexity 1 21 0 1 885 614 251 39 28 chr6 39388869 39389049 -110127988 - B3A SINE B2 -16 182 1 1 885 263 150 17 0 chr6 39389066 39389126 -110127911 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 885 415 339 135 27 chr6 39389237 39389422 -110127615 - B4A SINE B4 -86 206 2 1 885 459 194 0 0 chr6 39390194 39390266 -110126771 + B3 SINE B2 2 73 -143 1 885 2504 106 111 14 chr6 39390323 39390763 -110126274 + RLTR47_MM LTR ERV1 1 483 -49 1 885 465 167 77 0 chr6 39390824 39390902 -110126135 - B3 SINE B2 -131 85 2 1 885 865 109 47 0 chr6 39390928 39391056 -110125981 - RLTR24 LTR ERV1 -395 134 1 1 885 412 211 274 0 chr6 39391058 39391153 -110125884 + B3 SINE B2 84 204 -12 1 885 1265 102 11 0 chr6 39391156 39391332 -110125705 + B2_Mm1t SINE B2 2 179 -14 1 885 272 137 36 73 chr6 39391346 39391401 -110125636 + B2_Mm2 SINE B2 49 101 -94 1 885 180 0 0 0 chr6 39391421 39391441 -110125596 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 1 885 1114 100 65 0 chr6 39391453 39391623 -110125414 + B2_Mm2 SINE B2 13 193 -2 1 885 1106 96 0 27 chr6 39391820 39391970 -110125067 + B1_Mus2 SINE Alu 2 147 0 1 885 273 119 0 0 chr6 39391970 39392012 -110125025 + (A)n Simple_repeat Simple_repeat 1 42 0 1 885 660 160 38 8 chr6 39392175 39392307 -110124730 + RMER17C LTR ERVK 1 136 -274 1 885 1228 41 0 13 chr6 39392410 39392559 -110124478 - B1_Mus2 SINE Alu 0 147 1 1 885 322 340 36 9 chr6 39392764 39392874 -110124163 + RSINE1 SINE B4 2 114 -51 1 885 180 171 0 68 chr6 39392895 39392939 -110124098 + L4 LINE RTE 892 932 -1097 1 885 225 94 0 0 chr6 39393070 39393102 -110123935 + (A)n Simple_repeat Simple_repeat 1 32 0 1 885 793 106 35 0 chr6 39393104 39393217 -110123820 + B2_Mm2 SINE B2 2 118 -77 1 885 237 65 0 0 chr6 39393225 39393256 -110123781 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 885 1257 45 6 0 chr6 39393257 39393413 -110123624 - B2_Mm2 SINE B2 -37 158 2 1 885 215 254 83 17 chr6 39393466 39393526 -110123511 + B4 SINE B4 63 126 -166 1 885 879 115 172 24 chr6 39393565 39393734 -110123303 + B2_Mm2 SINE B2 2 195 0 1 885 183 42 0 0 chr6 39393783 39393807 -110123230 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 885 748 159 7 48 chr6 39393872 39394017 -110123020 + B1_Mus1 SINE Alu 3 141 -7 1 885 384 182 0 0 chr6 39394226 39394292 -110122745 + RLTR24 LTR ERV1 7 72 -457 1 885 691 284 40 100 chr6 39394320 39394537 -110122500 - RMER5 LTR ERV1 -194 340 138 1 885 1345 95 16 0 chr6 39394537 39394726 -110122311 + B2_Mm1t SINE B2 2 193 0 1 885 691 284 40 100 chr6 39394726 39394744 -110122293 - RMER5 LTR ERV1 -397 137 123 1 885 999 124 129 6 chr6 39394744 39394914 -110122123 + B2_Mm2 SINE B2 1 191 -4 1 885 691 284 40 100 chr6 39394914 39395006 -110122031 - RMER5 LTR ERV1 -412 122 32 1 885 1027 16 8 0 chr6 39395173 39395295 -110121742 - B1_Mus1 SINE Alu 0 148 26 1 885 466 212 86 26 chr6 39395309 39395425 -110121612 + B1_Mur1 SINE Alu 27 149 0 1 885 832 154 29 22 chr6 39395510 39395649 -110121388 + B1_Mus2 SINE Alu 1 140 -7 1 885 325 209 106 32 chr6 39396044 39396138 -110120899 + B1_Mus2 SINE Alu 47 147 0 1 885 252 0 0 0 chr6 39396193 39396221 -110120816 + (A)n Simple_repeat Simple_repeat 1 28 0 1 885 644 163 67 60 chr6 39396479 39396629 -110120408 + B2_Mm2 SINE B2 40 190 -5 1 885 694 97 19 0 chr6 39396678 39396781 -110120256 - B1_Mus2 SINE Alu 0 147 43 1 885 357 24 0 0 chr6 39396783 39396825 -110120212 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 885 546 16 0 0 chr6 39396825 39396888 -110120149 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 885 357 250 0 94 chr6 39396896 39397024 -110120013 - PB1D9 SINE Alu 0 120 5 1 885 449 260 0 48 chr6 39397203 39397308 -110119729 - ID_B1 SINE B4 -109 115 16 1 885 22 0 0 0 chr6 39397379 39397401 -110119636 + AT_rich Low_complexity Low_complexity 1 22 0 1 885 935 203 13 66 chr6 39397420 39397647 -110119390 - B3 SINE B2 0 216 2 1 885 219 69 0 0 chr6 39397661 39397690 -110119347 + (A)n Simple_repeat Simple_repeat 1 29 0 1 885 648 285 69 82 chr6 39397770 39398076 -110118961 - RMER15 LTR ERVL 0 575 274 1 885 2206 147 59 36 chr6 39398243 39398444 -110118593 + RMER10B LTR ERVL 2 221 -177 1 885 560 14 14 0 chr6 39398444 39398513 -110118524 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 885 2206 147 59 36 chr6 39398513 39398699 -110118338 + RMER10B LTR ERVL 222 398 0 1 885 809 51 240 25 chr6 39398956 39399069 -110117968 + B1_Mus1 SINE Alu 2 143 -5 1 885 345 0 0 83 chr6 39399069 39399129 -110117908 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1 885 879 168 7 7 chr6 39399388 39399538 -110117499 + B1_Mur4 SINE Alu 1 150 0 1 885 945 178 81 21 chr6 39400073 39400308 -110116729 - RMER10B LTR ERVL 0 398 150 1 885 541 165 16 0 chr6 39400308 39400429 -110116608 + GA-rich Low_complexity Low_complexity 2 124 0 1 885 496 179 36 0 chr6 39400433 39400517 -110116520 - B1_Mus1 SINE Alu -60 88 2 1 885 524 299 7 7 chr6 39400603 39400738 -110116299 - ID_B1 SINE B4 -3 221 87 1 885 1254 48 0 0 chr6 39400904 39401051 -110115986 + B1_Mus2 SINE Alu 1 147 0 1 885 213 139 0 0 chr6 39401054 39401097 -110115940 + (A)n Simple_repeat Simple_repeat 1 43 0 1 885 914 160 49 44 chr6 39401117 39401300 -110115737 + B2_Mm2 SINE B2 6 189 -6 1 885 333 314 67 60 chr6 39401466 39401615 -110115422 - RSINE1 SINE B4 -14 151 2 1 885 1148 89 0 0 chr6 39401627 39401773 -110115264 - B1_Mm SINE Alu -1 146 1 1 885 231 36 0 0 chr6 39402316 39402344 -110114693 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1 885 321 89 0 0 chr6 39402350 39402395 -110114642 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 885 365 214 0 14 chr6 39402459 39402530 -110114507 - B3A SINE B2 -127 71 2 1 885 390 21 0 0 chr6 39402565 39402612 -110114425 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 885 1188 43 0 14 chr6 39402612 39402746 -110114291 - B1_Mus2 SINE Alu -12 135 2 1 885 307 291 64 43 chr6 39402888 39403028 -110114009 + B4A SINE B4 78 220 -72 1 885 496 228 112 52 chr6 39402903 39403037 -110114000 + B1_Mur1 SINE Alu 8 149 0 1 885 261 180 9 160 chr6 39403061 39403086 -110113951 - CYRA11_Mm Unknown Y-chromosome -282 335 251 1 885 474 145 0 0 chr6 39403086 39403162 -110113875 + URR1A DNA MER1_type 79 154 -72 1 885 234 62 0 0 chr6 39403167 39403199 -110113838 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1 885 1268 51 6 0 chr6 39403199 39403357 -110113680 - B2_Mm1a SINE B2 -33 160 2 1 885 502 193 0 0 chr6 39403357 39403444 -110113593 + URR1A DNA MER1_type 139 225 -1 1 885 1202 126 0 0 chr6 39403591 39403766 -110113271 + B2_Mm2 SINE B2 1 175 -20 1 885 869 76 248 7 chr6 39403966 39404111 -110112926 + B2_Mm2 SINE B2 2 181 -14 1 885 315 153 0 0 chr6 39404113 39404131 -110112906 + T-rich Low_complexity Low_complexity 55 72 0 1 885 1188 68 14 0 chr6 39404131 39404277 -110112760 - B1_Mus1 SINE Alu 0 148 1 1 885 315 153 0 0 chr6 39404277 39404330 -110112707 + T-rich Low_complexity Low_complexity 2 54 0 1 885 1555 37 16 0 chr6 39404332 39404522 -110112515 - B2_Mm1t SINE B2 0 193 1 1 885 2030 191 118 30 chr6 39404664 39405139 -110111898 - RLTR12B LTR ERVK -11 517 1 1 885 569 188 107 23 chr6 39405143 39405274 -110111763 + B1_Mur4 SINE Alu 9 150 0 1 885 347 245 32 11 chr6 39406151 39406246 -110110791 + L1MB5 LINE L1 6070 6166 -8 1 885 670 260 48 7 chr6 39406613 39406803 -110110234 - B3A SINE B2 -14 202 6 1 885 1193 128 27 0 chr6 39406826 39407014 -110110023 - B2_Mm2 SINE B2 -1 194 2 1 885 466 250 73 46 chr6 39407070 39407221 -110109816 - RSINE1 SINE B4 0 165 11 1 885 3008 26 2 158 chr6 39407236 39407698 -110109339 - RLTR10 LTR ERVK 0 390 1 1 885 11090 96 49 42 chr6 39407700 39409632 -110107405 - RLTR10-int LTR ERVK -3 1984 41 1 885 2963 23 2 188 chr6 39409642 39410121 -110106916 - RLTR10 LTR ERVK 0 390 1 1 885 801 268 20 10 chr6 39410149 39410345 -110106692 - B3A SINE B2 0 198 1 1 885 577 304 22 72 chr6 39410364 39410487 -110106550 - B4 SINE B4 -80 212 91 1 885 216 0 0 0 chr6 39410487 39410511 -110106526 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 885 1128 73 0 0 chr6 39410511 39410648 -110106389 - B1_Mus2 SINE Alu -10 137 1 1 885 577 304 22 72 chr6 39410648 39410746 -110106291 - B4 SINE B4 -202 90 2 1 885 391 208 0 0 chr6 39410815 39410888 -110106149 - B1F SINE Alu -43 74 2 1 885 281 274 0 27 chr6 39410829 39410904 -110106133 - ID_B1 SINE B4 -83 141 69 1 885 768 187 30 7 chr6 39410971 39411106 -110105931 - B1_Mur3 SINE Alu -2 147 10 1 885 920 107 50 0 chr6 39411133 39411273 -110105764 - B1_Mur3 SINE Alu -1 148 2 1 885 568 196 28 63 chr6 39411327 39411469 -110105568 - RSINE1 SINE B4 0 165 29 1 885 180 111 0 0 chr6 39411542 39411569 -110105468 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 885 364 235 78 137 chr6 39411742 39411768 -110105269 + B4 SINE B4 75 218 -74 1 885 819 118 63 0 chr6 39411768 39411895 -110105142 + B1_Mus1 SINE Alu 6 140 -8 1 885 183 42 0 0 chr6 39411895 39411919 -110105118 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 885 1224 68 0 0 chr6 39411926 39412073 -110104964 + B1_Mm SINE Alu 1 147 0 1 885 1074 96 0 33 chr6 39412137 39412288 -110104749 - B1_Mus1 SINE Alu -1 147 2 1 885 335 266 21 31 chr6 39413512 39413609 -110103428 - RSINE1 SINE B4 -15 150 55 1 885 1177 68 0 0 chr6 39413768 39413914 -110103123 - B1_Mus2 SINE Alu 0 147 2 1 885 556 189 94 0 chr6 39415793 39415899 -110101138 - PB1D9 SINE Alu -1 119 4 1 885 874 153 14 20 chr6 39415903 39416050 -110100987 - B1_Mus1 SINE Alu -1 147 2 1 885 1151 101 0 0 chr6 39416059 39416207 -110100830 - B1_Mus1 SINE Alu 0 148 1 1 885 1138 88 99 6 chr6 39416218 39416389 -110100648 - B2_Mm2 SINE B2 -8 187 1 1 885 461 218 81 0 chr6 39416420 39416507 -110100530 - RSINE1 SINE B4 -69 96 3 1 885 265 294 66 6 chr6 39416905 39417025 -110100012 + PB1D7 SINE Alu 7 127 -20 1 885 269 237 51 26 chr6 39417178 39417256 -110099781 + ID4_ SINE ID 4 83 0 1 885 440 237 55 48 chr6 39417349 39417495 -110099542 - B1F SINE Alu 0 149 3 1 885 183 239 0 0 chr6 39417517 39417563 -110099474 + CT-rich Low_complexity Low_complexity 4 49 0 1 885 402 106 293 81 chr6 39417567 39417596 -110099441 - B2_Mm2 SINE B2 0 195 175 1 885 1177 62 0 0 chr6 39417596 39417741 -110099296 - B1_Mus2 SINE Alu -2 145 1 1 885 402 106 293 81 chr6 39417741 39417834 -110099203 - B2_Mm2 SINE B2 -21 174 47 1 885 1329 69 22 28 chr6 39417852 39418032 -110099005 - B2_Mm2 SINE B2 -14 181 3 1 885 1042 135 0 0 chr6 39418036 39418184 -110098853 - B1_Mus1 SINE Alu 0 148 1 1 885 428 181 0 0 chr6 39418237 39418309 -110098728 - B3A SINE B2 -125 73 2 1 885 507 325 42 65 chr6 39418341 39418558 -110098479 - B3 SINE B2 -2 214 3 1 885 233 130 130 0 chr6 39418848 39418894 -110098143 - Lx7 LINE L1 -516 7180 7129 1 885 207 88 0 0 chr6 39418902 39418936 -110098101 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 885 366 253 21 10 chr6 39419610 39419706 -110097331 - PB1D10 SINE Alu -16 101 5 1 885 327 25 0 0 chr6 39419716 39419756 -110097281 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 885 457 271 43 36 chr6 39420634 39420772 -110096265 + RSINE1 SINE B4 25 163 -2 1 885 641 207 104 0 chr6 39420823 39420958 -110096079 + B1_Mur2 SINE Alu 1 149 0 1 885 899 174 7 13 chr6 39420960 39421111 -110095926 + B1_Mur4 SINE Alu 1 150 0 1 885 186 43 0 0 chr6 39421115 39421138 -110095899 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 1 885 528 337 49 3 chr6 39421213 39421499 -110095538 + L1M2 LINE L1 5488 5786 -511 1 885 599 143 102 70 chr6 39421503 39421516 -110095521 - B1_Mur4 SINE Alu 0 150 139 1 885 216 0 0 0 chr6 39421516 39421540 -110095497 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 885 616 143 102 70 chr6 39421540 39421654 -110095383 - B1_Mus1 SINE Alu -12 138 19 1 885 865 211 57 0 chr6 39421656 39421850 -110095187 - B3 SINE B2 -11 205 1 1 885 1224 54 0 0 chr6 39422036 39422184 -110094853 + B1_Mus1 SINE Alu 1 148 0 1 885 462 276 86 159 chr6 39422526 39422746 -110094291 - ID_B1 SINE B4 -20 204 1 1 885 375 23 0 0 chr6 39422823 39422867 -110094170 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 885 279 0 0 0 chr6 39422867 39422898 -110094139 + (TCC)n Simple_repeat Simple_repeat 1 31 0 1 885 377 321 19 108 chr6 39422907 39423064 -110093973 - ID_B1 SINE B4 -1 223 81 1 885 229 312 9 103 chr6 39423085 39423133 -110093904 - MIR3 SINE MIR -8 200 158 1 885 302 356 0 0 chr6 39423133 39423248 -110093789 - PB1D10 SINE Alu -2 115 1 1 885 229 312 9 103 chr6 39423248 39423306 -110093731 - MIR3 SINE MIR -51 157 104 1 885 207 204 18 18 chr6 39423371 39423426 -110093611 + GA-rich Low_complexity Low_complexity 3 57 0 1 885 269 246 84 28 chr6 39423589 39423660 -110093377 + MT2B LTR ERVL 183 257 -344 1 885 719 53 0 10 chr6 39423608 39423697 -110093340 + B1_Mus2 SINE Alu 51 139 -8 1 885 315 0 0 0 chr6 39423697 39423732 -110093305 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 885 182 352 71 32 chr6 39425117 39425243 -110091794 + MIR3 SINE MIR 59 189 -19 1 885 778 224 81 10 chr6 39425653 39425851 -110091186 - ID_B1 SINE B4 -9 215 4 1 885 246 377 13 0 chr6 39425871 39425948 -110091089 - ID4_ SINE ID -4 79 2 1 885 1079 146 37 16 chr6 39426145 39426333 -110090704 + B2_Mm2 SINE B2 1 192 -3 1 885 308 317 19 28 chr6 39427530 39427637 -110089400 - PB1D10 SINE Alu -7 110 5 1 885 658 259 13 26 chr6 39429169 39429320 -110087717 - RSINE1 SINE B4 0 165 17 1 885 442 229 21 10 chr6 39429339 39429436 -110087601 - PB1D9 SINE Alu -1 119 22 1 885 741 129 218 0 chr6 39429490 39429637 -110087400 - B2_Mm2 SINE B2 -15 180 2 1 885 183 315 41 0 chr6 39429901 39429974 -110087063 + L2b LINE L2 3204 3279 -96 1 885 211 268 125 0 chr6 39430690 39430746 -110086291 - B1F SINE Alu -19 130 68 1 885 234 192 132 19 chr6 39430698 39430751 -110086286 - ID_B1 SINE B4 -24 200 142 1 885 420 20 0 0 chr6 39430751 39430800 -110086237 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1 885 183 80 0 0 chr6 39430800 39430824 -110086213 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 1 885 466 248 47 62 chr6 39430838 39430967 -110086070 - RSINE1 SINE B4 0 165 39 1 885 256 274 148 17 chr6 39430971 39431086 -110085951 - B3 SINE B2 -16 200 71 1 885 928 199 76 16 chr6 39431899 39432083 -110084954 - B3 SINE B2 -21 195 1 1 885 344 333 0 0 chr6 39432083 39432158 -110084879 - ID_B1 SINE B4 -66 158 84 1 885 341 140 310 26 chr6 39433311 39433427 -110083610 - B2_Mm2 SINE B2 0 195 47 1 885 618 119 413 0 chr6 39433493 39433619 -110083418 - B2_Mm1t SINE B2 -14 179 2 1 885 303 250 0 38 chr6 39433620 39433699 -110083338 + Lx8 LINE L1 7225 7300 -173 1 885 760 263 21 21 chr6 39433749 39433927 -110083110 + B3 SINE B2 23 203 -13 1 885 844 192 7 0 chr6 39433927 39434073 -110082964 + B1_Mur1 SINE Alu 1 147 -2 1 885 760 263 21 21 chr6 39434073 39434088 -110082949 + B3 SINE B2 204 216 0 1 885 1193 75 0 0 chr6 39434278 39434424 -110082613 - B1_Mus2 SINE Alu 0 147 2 1 885 180 0 0 0 chr6 39434554 39434574 -110082463 + (T)n Simple_repeat Simple_repeat 1 20 0 1 885 480 98 12 0 chr6 39434754 39434836 -110082201 + L1Md_F2 LINE L1 6500 6582 0 1 885 1456 56 22 0 chr6 39434863 39435041 -110081996 + B2_Mm2 SINE B2 1 182 -13 1 885 421 91 0 20 chr6 39435072 39435187 -110081850 + B2_Mm2 SINE B2 47 195 0 1 885 983 189 26 0 chr6 39435242 39435432 -110081605 + B2_Mm2 SINE B2 1 195 0 1 885 443 193 0 114 chr6 39435802 39435822 -110081215 + MT2B LTR ERVL 149 154 -447 1 885 859 37 0 0 chr6 39435822 39435931 -110081106 + B1_Mus1 SINE Alu 1 109 -39 1 885 453 218 26 0 chr6 39435967 39436045 -110080992 - RSINE1 SINE B4 -2 163 84 1 885 528 303 15 0 chr6 39436044 39436176 -110080861 - B3A SINE B2 -64 134 1 1 885 314 206 0 31 chr6 39436176 39436232 -110080805 - RSINE1 SINE B4 -87 78 25 1 885 210 37 0 0 chr6 39436236 39436263 -110080774 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 885 1020 48 79 0 chr6 39436263 39436389 -110080648 - B1_Mm SINE Alu -11 136 1 1 885 452 303 7 44 chr6 39436850 39437022 -110080015 - B3 SINE B2 -61 155 1 1 885 839 179 7 33 chr6 39437198 39437348 -110079689 - B1_Mus2 SINE Alu 0 147 2 1 885 771 159 0 0 chr6 39437429 39437599 -110079438 + (TG)n Simple_repeat Simple_repeat 1 170 0 1 885 251 326 32 53 chr6 39437600 39437694 -110079343 - B1F2 SINE Alu -56 93 2 1 885 361 256 42 17 chr6 39439279 39439398 -110077639 - MIR3 SINE MIR -11 197 76 1 885 551 202 96 148 chr6 39439608 39439817 -110077220 - B3A SINE B2 0 198 1 1 885 642 203 17 8 chr6 39439820 39439939 -110077098 - PB1D7 SINE Alu 0 120 1 1 885 653 214 38 0 chr6 39440041 39440172 -110076865 + B1_Mur3 SINE Alu 3 138 -11 1 885 836 156 77 12 chr6 39440291 39440460 -110076577 + B2_Mm2 SINE B2 1 180 -15 1 885 315 105 0 0 chr6 39440460 39440517 -110076520 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 885 210 37 0 0 chr6 39440516 39440543 -110076494 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 885 380 196 32 21 chr6 39440544 39440638 -110076399 + HAL1-3A_ME LINE L1 1976 2070 -788 1 885 1341 91 37 0 chr6 39440639 39440826 -110076211 + B2_Mm2 SINE B2 2 195 0 1 885 936 119 0 0 chr6 39441690 39441849 -110075188 + (CAGG)n Simple_repeat Simple_repeat 1 159 0 1 885 674 233 99 12 chr6 39442451 39442612 -110074425 - ID_B1 SINE B4 -1 223 49 1 885 619 228 0 52 chr6 39442618 39442752 -110074285 - B1_Mur4 SINE Alu -21 129 3 1 885 210 37 0 0 chr6 39442772 39442799 -110074238 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 885 235 279 25 25 chr6 39443861 39443942 -110073095 - MIRc SINE MIR -109 159 79 1 885 221 227 0 0 chr6 39445693 39445737 -110071300 + B3 SINE B2 2 45 -171 1 885 217 309 18 149 chr6 39445820 39445831 -110071206 + B2_Mm1t SINE B2 42 50 -143 1 885 850 174 11 28 chr6 39445831 39446008 -110071029 - B2_Mm2 SINE B2 -19 176 3 1 885 674 277 20 7 chr6 39446008 39446157 -110070880 + B3 SINE B2 48 198 -18 1 885 788 94 250 20 chr6 39446160 39446312 -110070725 - B2_Mm2 SINE B2 -7 188 2 1 885 207 0 0 0 chr6 39446410 39446433 -110070604 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 885 306 0 0 0 chr6 39446433 39446466 -110070571 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 885 326 280 0 0 chr6 39446467 39446567 -110070470 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 885 297 286 65 0 chr6 39447510 39447587 -110069450 - ID4_ SINE ID 0 83 2 1 885 590 293 92 92 chr6 39447660 39447878 -110069159 + ID_B1 SINE B4 7 224 0 1 885 331 377 81 56 chr6 39447992 39448312 -110068725 + L1MC4a LINE L1 5295 5622 -2260 1 885 367 329 7 0 chr6 39448350 39448487 -110068550 + L1MC4a LINE L1 5693 5830 -2052 1 885 1293 152 9 0 chr6 39448532 39448742 -110068295 - B3 SINE B2 0 216 5 1 885 270 0 0 0 chr6 39448773 39448803 -110068234 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 885 217 262 16 16 chr6 39448804 39448866 -110068171 - RSINE1 SINE B4 -17 148 87 1 885 393 236 84 97 chr6 39449024 39449057 -110067980 - RSINE1 SINE B4 -10 155 119 1 885 1187 72 12 0 chr6 39449057 39449223 -110067814 + (TATG)n Simple_repeat Simple_repeat 3 170 0 1 885 393 236 84 97 chr6 39449223 39449344 -110067693 - RSINE1 SINE B4 -47 118 3 1 885 534 82 224 0 chr6 39449429 39449527 -110067510 + B1_Mur4 SINE Alu 31 150 0 1 885 989 172 61 70 chr6 39449930 39450014 -110067023 - B3 SINE B2 -5 211 136 1 885 1161 36 0 0 chr6 39450014 39450151 -110066886 + B1_Mus2 SINE Alu 2 138 -9 1 885 252 0 0 0 chr6 39450151 39450179 -110066858 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 885 989 172 61 70 chr6 39450179 39450306 -110066731 - B3 SINE B2 -81 135 2 1 885 180 111 0 0 chr6 39450331 39450358 -110066679 + (T)n Simple_repeat Simple_repeat 1 27 0 1 885 327 49 0 0 chr6 39450430 39450471 -110066566 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 885 207 0 0 0 chr6 39450471 39450494 -110066543 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 885 733 275 17 0 chr6 39450494 39450672 -110066365 - B3A SINE B2 -16 182 2 1 885 535 293 38 13 chr6 39450711 39450870 -110066167 + RSINE1 SINE B4 3 165 0 1 885 1493 42 21 21 chr6 39450920 39451113 -110065924 + B2_Mm1a SINE B2 1 193 0 1 885 336 353 87 39 chr6 39451168 39451398 -110065639 - L1M5 LINE L1 -1096 5050 4810 1 885 257 262 194 9 chr6 39452162 39452270 -110064767 - MER58B DNA MER1_type -2 339 212 1 886 346 242 58 77 chr6 39452851 39452963 -110064074 + B1F1 SINE Alu 14 124 -3 1 886 439 315 181 0 chr6 39452973 39453211 -110063826 + B4A SINE B4 1 281 -11 1 886 262 333 0 14 chr6 39454073 39454143 -110062894 - B4 SINE B4 0 292 224 1 886 686 239 137 34 chr6 39454198 39454402 -110062635 - B4 SINE B4 -67 225 1 1 886 669 315 18 20 chr6 39454418 39454627 -110062410 - ID_B1 SINE B4 -47 245 40 1 886 2345 87 44 9 chr6 39454652 39454967 -110062070 + ORR1A2 LTR MaLR 2 327 0 1 886 1288 91 11 6 chr6 39455147 39455324 -110061713 + B2_Mm1a SINE B2 2 179 -14 1 886 377 86 27 20 chr6 39455352 39455463 -110061574 + B2_Mm2 SINE B2 47 194 -1 1 886 657 293 70 10 chr6 39455981 39456171 -110060866 + B3 SINE B2 1 202 -14 1 886 646 217 64 21 chr6 39456171 39456312 -110060725 - B1_Mur2 SINE Alu -1 148 2 1 886 312 286 61 26 chr6 39456427 39456542 -110060495 - PB1D7 SINE Alu -1 119 1 1 886 1135 192 5 19 chr6 39456888 39457100 -110059937 - B3 SINE B2 -6 210 2 1 886 1251 34 7 0 chr6 39457812 39457958 -110059079 - B1_Mus2 SINE Alu 0 147 1 1 886 422 264 0 35 chr6 39459070 39459184 -110057853 + PB1D10 SINE Alu 1 110 -7 1 886 884 174 0 0 chr6 39459193 39459337 -110057700 + B1_Mur1 SINE Alu 6 149 0 1 886 399 282 121 8 chr6 39459387 39459519 -110057518 + B1F SINE Alu 1 147 -2 1 886 458 124 0 11 chr6 39459519 39459609 -110057428 + (CAA)n Simple_repeat Simple_repeat 1 89 0 1 886 309 278 75 32 chr6 39459697 39459790 -110057247 + RSINE1 SINE B4 68 164 -1 1 886 923 131 7 27 chr6 39459926 39460075 -110056962 - B1_Mus2 SINE Alu -1 146 1 1 886 270 108 0 0 chr6 39460087 39460124 -110056913 - PB1D7 SINE Alu -8 112 76 1 886 655 246 88 16 chr6 39461251 39461433 -110055604 - ID_B1 SINE B4 -26 198 4 1 886 391 185 74 0 chr6 39461521 39461602 -110055435 + PB1D10 SINE Alu 26 112 -5 1 886 391 232 140 10 chr6 39462481 39462581 -110054456 - PB1D7 SINE Alu -7 113 1 1 886 635 185 104 0 chr6 39462613 39462748 -110054289 + B1_Mur2 SINE Alu 1 149 0 1 886 377 250 43 86 chr6 39462787 39462949 -110054088 + L1M2 LINE L1 4792 4946 -1197 1 886 1186 56 124 6 chr6 39463089 39463250 -110053787 + B2_Mm2 SINE B2 2 181 -14 1 886 1085 45 8 0 chr6 39463262 39463395 -110053642 - B1_Mus1 SINE Alu 0 148 15 1 886 378 0 0 0 chr6 39463412 39463454 -110053583 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 886 560 14 0 14 chr6 39463454 39463524 -110053513 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 886 755 126 7 88 chr6 39463673 39463821 -110053216 - B1_Mur4 SINE Alu 0 150 15 1 886 301 268 35 100 chr6 39463675 39463845 -110053192 - ID_B1 SINE B4 0 224 66 1 886 764 187 8 0 chr6 39463846 39463980 -110053057 - B1_Mm SINE Alu -12 135 1 1 886 1685 26 0 0 chr6 39463993 39464184 -110052853 - B2_Mm1a SINE B2 0 193 3 1 886 1088 230 5 19 chr6 39464212 39464425 -110052612 + B3 SINE B2 1 210 -6 1 886 207 0 0 0 chr6 39464441 39464464 -110052573 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 886 492 18 0 0 chr6 39464471 39464528 -110052509 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 886 568 219 109 0 chr6 39464530 39464667 -110052370 - B3A SINE B2 -46 152 1 1 886 245 309 0 14 chr6 39465301 39465370 -110051667 + GA-rich Low_complexity Low_complexity 5 72 0 1 886 259 257 40 26 chr6 39466058 39466134 -110050903 + ID4_ SINE ID 1 77 -6 1 886 597 228 53 26 chr6 39466180 39466226 -110050811 + B3A SINE B2 5 53 -145 1 886 1492 64 5 0 chr6 39466226 39466414 -110050623 - B2_Mm1a SINE B2 -4 189 1 1 886 597 228 53 26 chr6 39466414 39466556 -110050481 + B3A SINE B2 54 198 0 1 886 826 266 10 5 chr6 39466582 39466782 -110050255 + B3 SINE B2 3 203 -13 1 886 349 196 0 0 chr6 39466842 39466898 -110050139 + B1_Mur1 SINE Alu 62 117 -32 1 886 1684 236 51 31 chr6 39466902 39467363 -110049674 - RLTR18 LTR ERVK -66 550 132 1 886 300 111 0 0 chr6 39467411 39467456 -110049581 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 886 330 87 0 0 chr6 39467496 39467542 -110049495 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 1 886 920 216 30 10 chr6 39467566 39467767 -110049270 + B3 SINE B2 2 206 -10 1 886 912 257 9 0 chr6 39467903 39468113 -110048924 + B3 SINE B2 1 212 -4 1 886 21 36 0 0 chr6 39468126 39468154 -110048883 + AT_rich Low_complexity Low_complexity 1 28 0 1 886 920 195 0 0 chr6 39468210 39468359 -110048678 + B1_Mur2 SINE Alu 1 149 0 1 886 652 243 159 6 chr6 39468391 39468561 -110048476 + B3A SINE B2 2 197 -1 1 886 1257 41 7 0 chr6 39468659 39468806 -110048231 + B1_Mus1 SINE Alu 1 148 0 1 886 22 0 0 0 chr6 39468876 39468898 -110048139 + AT_rich Low_complexity Low_complexity 1 22 0 1 886 532 185 65 0 chr6 39468910 39469002 -110048035 + B1_Mur2 SINE Alu 19 116 -33 1 886 189 0 0 0 chr6 39469008 39469029 -110048008 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 886 231 356 44 15 chr6 39469189 39469394 -110047643 - L2 LINE L2 -735 2684 2474 1 886 494 125 28 0 chr6 39469613 39469685 -110047352 - B1_Mus2 SINE Alu 0 147 74 1 886 382 297 60 44 chr6 39469760 39469802 -110047235 - L2 LINE L2 -1286 2133 2093 1 886 3369 119 109 17 chr6 39469802 39470434 -110046603 + RMER6C LTR ERVK 1 690 0 1 886 382 297 60 44 chr6 39470434 39470574 -110046463 - L2 LINE L2 -1327 2092 1948 1 886 504 198 177 18 chr6 39470616 39470729 -110046308 + B1F SINE Alu 1 131 -18 1 886 1339 209 58 80 chr6 39470759 39471123 -110045914 + RLTR18 LTR ERVK 35 390 -226 1 886 567 53 0 0 chr6 39471365 39471440 -110045597 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 886 1246 263 11 7 chr6 39471460 39471743 -110045294 + RLTR18B LTR ERVK 225 508 -4 1 886 636 176 72 0 chr6 39471753 39471878 -110045159 + B1_Mur2 SINE Alu 1 134 -15 1 886 386 302 77 98 chr6 39471905 39472140 -110044897 + B4A SINE B4 53 282 -10 1 886 699 226 20 0 chr6 39472293 39472439 -110044598 - B1F2 SINE Alu 0 149 1 1 886 251 250 0 0 chr6 39472711 39472767 -110044270 + G-rich Low_complexity Low_complexity 2 57 0 1 886 1378 88 16 0 chr6 39473892 39474074 -110042963 - B2_Mm2 SINE B2 -9 186 2 1 886 966 175 32 59 chr6 39474113 39474332 -110042705 - B3 SINE B2 -1 215 3 1 886 23 0 0 0 chr6 39474343 39474366 -110042671 + AT_rich Low_complexity Low_complexity 1 23 0 1 886 1095 98 0 7 chr6 39474377 39474521 -110042516 - B1_Mus1 SINE Alu -5 143 1 1 886 570 243 80 7 chr6 39474547 39474684 -110042353 - B4 SINE B4 -72 220 74 1 886 228 298 279 8 chr6 39474960 39475082 -110041955 - MER3 DNA MER1_type -1 208 54 1 886 887 169 169 0 chr6 39475656 39475840 -110041197 - B3 SINE B2 0 216 2 1 886 1744 16 0 0 chr6 39475855 39476047 -110040990 + B2_Mm1t SINE B2 2 193 0 1 886 272 133 36 12 chr6 39476491 39476575 -110040462 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 886 30 59 0 14 chr6 39476594 39476633 -110040404 + AT_rich Low_complexity Low_complexity 1 39 0 1 886 1261 34 0 0 chr6 39476633 39476780 -110040257 + B1_Mm SINE Alu 1 147 0 1 886 30 59 0 14 chr6 39476780 39476809 -110040228 + AT_rich Low_complexity Low_complexity 1 29 0 1 886 213 94 0 0 chr6 39477089 39477121 -110039916 + (G)n Simple_repeat Simple_repeat 1 32 0 1 886 1195 169 172 101 chr6 39477888 39478243 -110038794 + ORR1C2 LTR MaLR 5 384 0 1 886 338 209 0 29 chr6 39478326 39478395 -110038642 + RSINE1 SINE B4 6 72 -93 1 886 370 248 212 8 chr6 39479459 39479564 -110037473 + RSINE1 SINE B4 12 141 -24 1 886 355 38 19 19 chr6 39479564 39479618 -110037419 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 886 370 248 212 8 chr6 39479618 39479630 -110037407 + RSINE1 SINE B4 142 153 -12 1 886 754 229 15 68 chr6 39479646 39479852 -110037185 + B3A SINE B2 3 197 -1 1 886 986 102 0 0 chr6 39479898 39480035 -110037002 - B1_Mus1 SINE Alu -1 147 11 1 886 438 128 72 128 chr6 39479924 39480049 -110036988 - MT2B LTR ERVL -323 278 161 1 886 302 265 118 24 chr6 39480491 39480576 -110036461 - B1F1 SINE Alu -56 93 1 1 886 561 237 151 43 chr6 39480645 39480830 -110036207 - B3 SINE B2 -10 206 2 1 886 1098 50 42 21 chr6 39480992 39481136 -110035901 + B1_Mm SINE Alu 1 147 0 1 886 232 48 23 23 chr6 39481136 39481179 -110035858 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 1 886 413 242 127 32 chr6 39481421 39481520 -110035517 - B3A SINE B2 -16 182 69 1 886 811 189 62 34 chr6 39481520 39481728 -110035309 + B3 SINE B2 1 214 -2 1 886 612 146 0 28 chr6 39481930 39482036 -110035001 - B1_Mur3 SINE Alu 0 149 47 1 886 233 174 60 179 chr6 39481977 39482061 -110034976 - RLTR25A LTR ERVK -521 582 509 1 886 769 180 7 21 chr6 39482271 39482413 -110034624 - B1_Mur3 SINE Alu -9 140 1 1 886 348 300 0 0 chr6 39482449 39482529 -110034508 - RSINE1 SINE B4 -19 146 67 1 886 213 207 409 11 chr6 39482545 39482633 -110034404 - PB1 SINE Alu 0 127 5 1 886 1193 122 0 31 chr6 39482653 39482848 -110034189 - B2_Mm2 SINE B2 -4 191 3 1 886 230 0 33 0 chr6 39483283 39483313 -110033724 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 886 1215 28 14 0 chr6 39483384 39483529 -110033508 + B1_Mus2 SINE Alu 1 147 0 1 886 298 336 22 88 chr6 39483681 39483818 -110033219 + ID_B1 SINE B4 48 175 -49 1 886 1028 181 46 15 chr6 39484015 39484211 -110032826 + B3 SINE B2 2 203 -13 1 886 941 150 0 7 chr6 39484212 39484360 -110032677 + B1_Mus1 SINE Alu 2 148 0 1 886 26 0 0 0 chr6 39484367 39484393 -110032644 + AT_rich Low_complexity Low_complexity 1 26 0 1 886 1028 40 0 0 chr6 39484393 39484518 -110032519 + B1_Mus1 SINE Alu 16 140 -8 1 886 225 83 0 0 chr6 39484518 39484554 -110032483 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 886 216 0 0 0 chr6 39484583 39484607 -110032430 + (T)n Simple_repeat Simple_repeat 1 24 0 1 886 236 30 30 0 chr6 39485001 39485034 -110032003 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 886 569 194 129 0 chr6 39485036 39485160 -110031877 - B1_Mur2 SINE Alu -9 140 1 1 886 555 257 285 75 chr6 39485184 39485537 -110031500 + MER44D DNA MER2_type 134 557 -148 1 886 237 312 73 31 chr6 39485616 39485712 -110031325 + B1_Mur3 SINE Alu 5 104 -45 1 886 336 277 41 55 chr6 39485696 39485841 -110031196 + B3A SINE B2 56 198 0 1 886 227 268 81 20 chr6 39485932 39486031 -110031006 + L1M5 LINE L1 5644 5748 -376 1 886 338 311 34 91 chr6 39486096 39486305 -110030732 + B4A SINE B4 5 201 -91 1 886 261 316 0 0 chr6 39486318 39486375 -110030662 + tRNA-Ala-GCY_ tRNA tRNA 12 68 -7 1 886 206 319 145 40 chr6 39486557 39486681 -110030356 - MIRb SINE MIR -111 157 21 1 886 490 223 25 112 chr6 39486984 39487181 -110029856 + L1MB7 LINE L1 5654 5833 -351 1 886 549 199 33 143 chr6 39487181 39487363 -110029674 + B3A SINE B2 32 193 -5 1 886 714 246 51 17 chr6 39487396 39487574 -110029463 + B3A SINE B2 14 197 -1 1 886 420 227 96 22 chr6 39487592 39487727 -110029310 + L1MB7 LINE L1 5894 6038 -140 1 886 1520 67 5 5 chr6 39487732 39487926 -110029111 - B2_Mm2 SINE B2 0 195 2 1 886 2388 82 25 6 chr6 39488782 39489103 -110027934 + ORR1A2 LTR MaLR 1 327 0 1 886 486 91 0 0 chr6 39490188 39490265 -110026772 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 886 462 18 0 0 chr6 39490260 39490315 -110026722 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 886 671 245 27 77 chr6 39490329 39490550 -110026487 - ID_B1 SINE B4 -14 210 1 1 886 414 235 98 77 chr6 39490657 39490792 -110026245 + RSINE1 SINE B4 18 156 -9 1 886 243 0 0 0 chr6 39490792 39490819 -110026218 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 886 645 148 171 8 chr6 39490866 39490989 -110026048 - B1_Mur4 SINE Alu -7 143 1 1 886 229 184 0 0 chr6 39491035 39491073 -110025964 - B1_Mur4 SINE Alu -112 38 1 1 886 481 219 95 66 chr6 39491115 39491252 -110025785 + B1_Mus1 SINE Alu 7 147 -1 1 886 339 25 0 0 chr6 39491401 39491441 -110025596 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 886 306 0 0 0 chr6 39491441 39491474 -110025563 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 886 265 78 0 5 chr6 39491490 39491535 -110025502 - B2_Mm2 SINE B2 -91 102 59 1 886 1074 86 104 0 chr6 39491560 39491723 -110025314 - B2_Mm2 SINE B2 -13 182 3 1 886 387 0 0 0 chr6 39491870 39491913 -110025124 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1 886 591 40 0 0 chr6 39491932 39492008 -110025029 + B1_Mus2 SINE Alu 72 147 0 1 886 222 348 43 35 chr6 39492012 39492041 -110024996 + PB1D10 SINE Alu 1 115 0 1 886 226 293 24 35 chr6 39492041 39492126 -110024911 + ID_B1 SINE B4 141 224 0 1 886 681 78 0 0 chr6 39492227 39492317 -110024720 - B2_Mm2 SINE B2 -73 122 33 1 886 546 180 33 83 chr6 39492465 39492586 -110024451 - PB1D9 SINE Alu 0 120 6 1 886 654 246 0 21 chr6 39492671 39492812 -110024225 - ID_B1 SINE B4 -7 217 80 1 886 204 135 27 0 chr6 39493250 39493287 -110023750 + (CAGAG)n Simple_repeat Simple_repeat 3 40 0 1 886 193 197 15 15 chr6 39493349 39493416 -110023621 + CT-rich Low_complexity Low_complexity 4 70 0 1 886 276 276 0 50 chr6 39493975 39494055 -110022982 + ID4_ SINE ID 3 78 -5 1 886 729 154 19 117 chr6 39494624 39494786 -110022251 + B1_Mus2 SINE Alu 1 146 -1 1 886 352 186 71 0 chr6 39495275 39495345 -110021692 + ID4_ SINE ID 5 79 -4 1 886 770 154 35 42 chr6 39496130 39496272 -110020765 + B1_Mur4 SINE Alu 10 150 0 1 886 213 39 0 0 chr6 39496288 39496314 -110020723 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 886 552 196 21 0 chr6 39496353 39496450 -110020587 - B3A SINE B2 -98 100 2 1 886 347 200 171 0 chr6 39496453 39496523 -110020514 - PB1 SINE Alu -25 102 21 1 886 363 281 49 49 chr6 39496639 39496781 -110020256 + RSINE1 SINE B4 2 143 -22 1 886 210 71 0 0 chr6 39496875 39496903 -110020134 + (CATG)n Simple_repeat Simple_repeat 1 28 0 1 886 285 29 0 0 chr6 39496903 39496937 -110020100 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 886 308 262 107 0 chr6 39498304 39498407 -110018630 + PB1 SINE Alu 2 115 -12 1 886 628 234 27 7 chr6 39498425 39498571 -110018466 + B1_Mur1 SINE Alu 1 149 0 1 886 339 286 69 38 chr6 39498627 39498758 -110018279 - B3 SINE B2 -15 201 67 1 886 589 156 48 129 chr6 39498811 39498958 -110018079 - B1_Mus2 SINE Alu -12 135 1 1 886 227 143 108 31 chr6 39499022 39499087 -110017950 - ID SINE ID -153 71 2 1 886 709 194 0 88 chr6 39499122 39499269 -110017768 - B1_Mur1 SINE Alu -15 134 1 1 886 213 200 18 18 chr6 39499592 39499648 -110017389 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 1 886 428 170 202 0 chr6 39499702 39499796 -110017241 - PB1D10 SINE Alu 0 117 5 1 886 263 228 18 0 chr6 39500137 39500194 -110016843 + L1M5 LINE L1 5614 5671 -453 1 886 1196 96 79 6 chr6 39500308 39500486 -110016551 + B2_Mm2 SINE B2 1 191 -4 2 886 327 146 0 0 chr6 39500557 39500612 -110016425 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 886 341 256 124 33 chr6 39500659 39500780 -110016257 + ID_B1 SINE B4 91 222 -2 4 886 403 277 34 0 chr6 39500801 39500916 -110016121 + B1F2 SINE Alu 11 132 -17 5 886 1504 54 11 5 chr6 39500962 39501149 -110015888 + B2_Mm1a SINE B2 1 188 -5 6 886 568 256 16 0 chr6 39501156 39501281 -110015756 + RSINE1 SINE B4 2 128 -37 7 886 477 0 0 0 chr6 39501327 39501380 -110015657 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 886 225 0 0 0 chr6 39501380 39501404 -110015633 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 886 924 212 23 15 chr6 39501415 39501613 -110015424 + B3A SINE B2 1 190 -5 1 886 269 271 17 0 chr6 39501633 39501692 -110015345 + ID4_ SINE ID 24 83 0 1 886 715 121 78 0 chr6 39501814 39501930 -110015107 - B1_Mur4 SINE Alu -1 149 25 1 886 939 132 150 0 chr6 39502741 39502880 -110014157 + B2_Mm2 SINE B2 2 158 -37 1 886 435 38 0 0 chr6 39502880 39502933 -110014104 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 886 939 132 150 0 chr6 39502933 39502960 -110014077 + B2_Mm2 SINE B2 159 192 -3 1 886 189 74 0 0 chr6 39503344 39503371 -110013666 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 1 886 1035 60 224 7 chr6 39503503 39503655 -110013382 + B2_Mm2 SINE B2 4 188 -7 1 886 267 309 12 24 chr6 39503667 39503750 -110013287 + ID4 SINE ID 2 83 0 1 886 242 220 153 71 chr6 39503834 39503879 -110013158 + PB1D10 SINE Alu 1 42 -75 1 886 1277 225 106 18 chr6 39503879 39504219 -110012818 + ORR1D2 LTR MaLR 1 370 0 1 886 242 220 153 71 chr6 39504219 39504271 -110012766 + PB1D10 SINE Alu 43 106 -11 1 886 1152 213 5 0 chr6 39504309 39504511 -110012526 + B3 SINE B2 4 206 -10 2 886 312 27 0 0 chr6 39504964 39505001 -110012036 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 886 377 348 33 52 chr6 39505033 39505245 -110011792 + L4 LINE RTE 1630 1837 -192 2 886 203 0 37 0 chr6 39505555 39505582 -110011455 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 2 886 468 297 0 18 chr6 39505985 39506098 -110010939 + RSINE1 SINE B4 41 151 -14 2 886 27 0 0 0 chr6 39506112 39506139 -110010898 + AT_rich Low_complexity Low_complexity 1 27 0 2 886 297 253 12 25 chr6 39506145 39506226 -110010811 + ID2 SINE ID 2 81 -2 2 886 310 291 171 60 chr6 39506231 39506273 -110010764 + ID_B1 SINE B4 93 134 -90 2 886 886 183 53 48 chr6 39506273 39506480 -110010557 + B3 SINE B2 1 208 -8 2 886 310 291 171 60 chr6 39506480 39506554 -110010483 + ID_B1 SINE B4 135 222 -2 2 886 418 283 10 39 chr6 39506575 39506678 -110010359 + PB1D10 SINE Alu 17 116 -1 2 886 21 57 0 0 chr6 39507620 39507655 -110009382 + GC_rich Low_complexity Low_complexity 1 35 0 3 886 25 75 0 0 chr6 39507682 39507735 -110009302 + GC_rich Low_complexity Low_complexity 1 53 0 3 886 1729 21 0 0 chr6 39508568 39508761 -110008276 + B2_Mm1a SINE B2 1 193 0 3 886 262 186 95 20 chr6 39509300 39509412 -110007625 + B1F SINE Alu 1 116 -34 3 886 403 318 25 69 chr6 39510304 39510507 -110006530 - MER2 DNA MER2_type -1 344 151 3 886 1281 102 32 0 chr6 39510518 39510704 -110006333 - B2_Mm1t SINE B2 -1 192 1 3 886 515 288 49 35 chr6 39510714 39510858 -110006179 - ID_B1 SINE B4 0 224 79 3 886 490 223 8 3 chr6 39510917 39511012 -110006025 + PB1D10 SINE Alu 8 107 -43 3 886 858 20 0 0 chr6 39511368 39511468 -110005569 + (TTC)n Simple_repeat Simple_repeat 3 102 0 3 886 1175 63 0 0 chr6 39511484 39511626 -110005411 - B1_Mus1 SINE Alu -5 143 2 3 886 366 23 0 0 chr6 39511788 39511831 -110005206 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 886 297 128 0 0 chr6 39511831 39511877 -110005160 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 886 260 263 0 17 chr6 39511879 39511937 -110005100 + polypurine Low_complexity Low_complexity 1 57 0 4 886 364 200 0 109 chr6 39511958 39511974 -110005063 + MT2B LTR ERVL 153 157 -444 4 886 632 46 0 3 chr6 39511974 39512066 -110004971 + B1_Mus1 SINE Alu 2 91 -56 4 886 312 212 45 15 chr6 39512085 39512152 -110004885 - B4A SINE B4 -41 251 183 4 886 197 77 51 0 chr6 39512160 39512199 -110004838 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 4 886 428 264 89 59 chr6 39512206 39512375 -110004662 - B4A SINE B4 -113 179 6 4 886 498 193 24 162 chr6 39513399 39513566 -110003471 + B1_Mur3 SINE Alu 6 149 0 4 886 198 103 0 0 chr6 39513661 39513690 -110003347 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 4 886 501 111 0 69 chr6 39513738 39513825 -110003212 - B1_Mur4 SINE Alu 0 150 70 4 886 740 240 81 5 chr6 39513974 39514104 -110002933 - MTEb LTR MaLR -69 310 166 5 886 231 36 0 0 chr6 39514104 39514132 -110002905 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 886 740 240 81 5 chr6 39514132 39514198 -110002839 - MTEb LTR MaLR -214 165 100 5 886 207 0 0 0 chr6 39514207 39514230 -110002807 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 886 2646 41 0 0 chr6 39514289 39514605 -110002432 - L1Md_T LINE L1 0 6582 6267 5 886 1155 62 111 0 chr6 39514626 39514788 -110002249 - B2_Mm2 SINE B2 -14 181 2 5 886 823 119 0 36 chr6 39514797 39514936 -110002101 - B1_Mur3 SINE Alu 0 149 16 5 886 366 257 53 178 chr6 39514806 39514938 -110002099 - B4 SINE B4 -72 220 104 5 886 1255 101 6 22 chr6 39514938 39515121 -110001916 + B2_Mm2 SINE B2 2 181 -14 5 886 366 257 53 178 chr6 39515121 39515196 -110001841 - B4 SINE B4 -189 103 39 5 886 682 219 46 23 chr6 39515339 39515470 -110001567 + B1_Mur2 SINE Alu 6 139 -10 5 886 1350 85 16 5 chr6 39515885 39516075 -110000962 - B2_Mm1a SINE B2 0 193 2 5 886 603 289 89 0 chr6 39516079 39516259 -110000778 - B3A SINE B2 0 198 3 6 886 513 221 44 9 chr6 39516264 39516378 -110000659 - PB1D7 SINE Alu -1 119 2 6 886 461 71 14 0 chr6 39516796 39516866 -110000171 + (TA)n Simple_repeat Simple_repeat 2 72 0 6 886 287 314 7 101 chr6 39517209 39517347 -109999690 + MER20 DNA MER1_type 89 213 -6 6 886 1006 214 41 0 chr6 39517342 39517538 -109999499 + B3 SINE B2 9 212 -4 6 886 329 269 79 63 chr6 39517828 39517955 -109999082 - MER89 LTR ERV1 -2 557 429 6 886 322 205 34 0 chr6 39517997 39518074 -109998963 - MTD LTR MaLR -14 365 279 6 886 784 133 0 24 chr6 39518097 39518220 -109998817 - B1_Mur2 SINE Alu -21 128 9 6 886 384 283 46 40 chr6 39518220 39518242 -109998795 - B4 SINE B4 -71 194 70 6 886 741 264 55 58 chr6 39518256 39518516 -109998521 - MTD LTR MaLR -155 245 1 6 886 741 301 27 4 chr6 39518517 39518774 -109998263 + Lx7 LINE L1 6970 7232 -464 6 886 224 333 71 9 chr6 39519285 39519397 -109997640 - PB1D7 SINE Alu -1 119 1 7 886 630 157 0 52 chr6 39519397 39519517 -109997520 - PB1D9 SINE Alu -38 111 3 7 886 318 238 44 106 chr6 39519416 39519529 -109997508 - B4 SINE B4 -105 187 82 7 886 335 300 41 35 chr6 39519552 39519697 -109997340 + B1F2 SINE Alu 3 148 -1 7 886 466 324 21 0 chr6 39519699 39519841 -109997196 + B1F SINE Alu 2 146 -3 7 886 1085 81 0 20 chr6 39520024 39520038 -109996999 - B1_Mus1 SINE Alu 0 148 136 7 886 206 32 32 0 chr6 39520038 39520069 -109996968 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 886 1085 81 0 20 chr6 39520069 39520205 -109996832 - B1_Mus1 SINE Alu -13 135 1 7 886 2418 190 33 12 chr6 39520209 39520388 -109996649 - RMER1B Other Other 0 1066 880 7 886 527 59 0 86 chr6 39520388 39520481 -109996556 - L1Md_F2 LINE L1 0 6582 6498 7 886 2418 190 33 12 chr6 39520481 39520780 -109996257 - RMER1B Other Other -187 879 579 7 886 1878 88 123 3 chr6 39520792 39521077 -109995960 - ORR1A2 LTR MaLR -8 319 1 7 886 256 283 62 23 chr6 39521090 39521220 -109995817 - RMER1B Other Other -537 529 395 7 886 616 189 198 11 chr6 39521239 39521416 -109995621 - B3 SINE B2 -2 214 5 8 886 546 227 102 0 chr6 39521429 39521557 -109995480 - B1_Mur1 SINE Alu -6 143 3 8 886 501 262 65 32 chr6 39521557 39521583 -109995454 - ID_B1 SINE B4 -6 218 60 8 886 3608 13 2 0 chr6 39521697 39522092 -109994945 - MTA_Mm LTR MaLR 0 396 1 8 886 576 208 240 40 chr6 39522251 39522426 -109994611 - B3 SINE B2 -6 210 1 8 886 600 226 113 0 chr6 39522428 39522527 -109994510 - B1_Mur1 SINE Alu 0 149 40 8 886 787 61 9 9 chr6 39522527 39522642 -109994395 + (TTCC)n Simple_repeat Simple_repeat 4 118 0 8 886 600 226 113 0 chr6 39522642 39522675 -109994362 - B1_Mur1 SINE Alu -110 39 3 8 886 324 0 0 0 chr6 39523161 39523197 -109993840 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 886 250 299 54 54 chr6 39523357 39523449 -109993588 - RSINE1 SINE B4 -33 132 41 8 886 306 0 0 0 chr6 39525685 39525719 -109991318 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 8 886 221 211 0 197 chr6 39525719 39525790 -109991247 - ID4_ SINE ID -10 73 17 9 886 232 293 0 0 chr6 39525891 39525949 -109991088 + T-rich Low_complexity Low_complexity 1 58 0 9 886 816 208 0 13 chr6 39525949 39526100 -109990937 - B1_Mur2 SINE Alu 0 149 1 9 886 232 294 114 74 chr6 39526618 39526794 -109990243 - MLT1A0 LTR MaLR -3 441 259 9 886 509 276 57 44 chr6 39526894 39527053 -109989984 - RSINE1 SINE B4 -1 164 4 9 886 22 56 0 0 chr6 39527106 39527142 -109989895 + AT_rich Low_complexity Low_complexity 1 36 0 9 886 455 165 32 55 chr6 39528038 39528149 -109988888 + B1_Mur4 SINE Alu 13 113 -7 9 886 320 269 128 48 chr6 39528149 39528163 -109988874 + B4 SINE B4 98 232 -60 9 886 392 242 189 37 chr6 39528245 39528433 -109988604 - MLT1A0 LTR MaLR -130 244 23 9 886 684 181 222 0 chr6 39528954 39529125 -109987912 + B3 SINE B2 2 210 -6 9 886 347 218 11 11 chr6 39529895 39529983 -109987054 + BC1_Mm scRNA scRNA 20 107 -45 9 886 454 210 20 20 chr6 39530427 39530529 -109986508 - ID_B1 SINE B4 0 224 123 1 886 444 307 0 0 chr6 39530531 39530710 -109986327 + C-rich Low_complexity Low_complexity 2 180 0 1 886 455 303 44 29 chr6 39531795 39531931 -109985106 - B1F SINE Alu -10 139 2 1 886 741 240 15 23 chr6 39531952 39532159 -109984878 - B3 SINE B2 -2 193 1 1 886 552 259 103 14 chr6 39532209 39532354 -109984683 - RSINE1 SINE B4 -6 159 2 1 886 195 94 0 0 chr6 39532535 39532553 -109984484 + (T)n Simple_repeat Simple_repeat 1 18 0 1 886 1282 34 0 0 chr6 39532553 39532700 -109984337 - B1_Mus2 SINE Alu 0 147 1 1 886 195 94 0 0 chr6 39532700 39532713 -109984324 + (T)n Simple_repeat Simple_repeat 1 13 0 1 886 580 236 0 8 chr6 39532713 39532837 -109984200 - ID_B1 SINE B4 0 224 102 1 886 414 241 52 90 chr6 39532837 39532868 -109984169 - B1F SINE Alu 0 149 1 1 886 267 341 62 55 chr6 39533035 39533181 -109983856 + MER20 DNA MER1_type 30 176 -43 1 886 386 274 31 10 chr6 39533519 39533615 -109983422 + PB1D7 SINE Alu 22 119 -1 1 886 314 250 0 14 chr6 39534504 39534573 -109982464 - RSINE1 SINE B4 -94 71 4 1 886 414 182 183 48 chr6 39534909 39534930 -109982107 - PB1D9 SINE Alu 0 120 104 1 886 1254 116 16 10 chr6 39534930 39535122 -109981915 - B2_Mm2 SINE B2 -1 194 2 1 886 414 182 183 48 chr6 39535122 39535204 -109981833 - PB1D9 SINE Alu -17 103 3 1 886 885 136 13 26 chr6 39535966 39536117 -109980920 - B1_Mur4 SINE Alu 0 150 2 1 886 611 237 144 14 chr6 39537792 39537960 -109979077 - B3A SINE B2 -28 188 2 1 886 186 103 0 0 chr6 39537968 39537997 -109979040 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 1 886 220 338 53 13 chr6 39538045 39538120 -109978917 - RSINE1 SINE B4 -81 84 7 1 886 957 176 0 0 chr6 39538258 39538406 -109978631 + B1_Mus1 SINE Alu 1 148 0 1 886 233 307 13 13 chr6 39538584 39538660 -109978377 + ID2 SINE ID 1 76 -7 1 886 715 179 131 13 chr6 39538807 39538960 -109978077 + B2_Mm2 SINE B2 2 172 -23 1 886 230 362 76 25 chr6 39539064 39539183 -109977854 - MIR SINE MIR -67 141 17 1 886 247 247 215 0 chr6 39539183 39539273 -109977764 - RSINE1 SINE B4 -2 163 54 1 886 3072 133 23 57 chr6 39539273 39539868 -109977169 - RMER6A LTR ERVK 0 756 202 1 886 1138 50 43 0 chr6 39539868 39540009 -109977028 - B1_Mm SINE Alu 0 147 1 1 886 2584 135 65 70 chr6 39540009 39540166 -109976871 - RMER6A LTR ERVK -475 215 57 1 886 301 315 88 66 chr6 39540620 39540756 -109976281 + RSINE1 SINE B4 5 143 -22 1 886 225 0 0 0 chr6 39540756 39540781 -109976256 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 886 180 0 0 0 chr6 39541250 39541270 -109975767 + (TTA)n Simple_repeat Simple_repeat 1 20 0 1 886 344 306 39 31 chr6 39543130 39543153 -109973884 - B4 SINE B4 -73 219 91 1 886 545 173 57 9 chr6 39543153 39543258 -109973779 - PB1D9 SINE Alu -5 115 6 1 886 234 21 39 77 chr6 39543368 39543420 -109973617 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 1 886 1671 26 0 5 chr6 39543848 39544042 -109972995 - B2_Mm1a SINE B2 0 193 1 1 886 905 168 0 0 chr6 39544217 39544360 -109972677 - B1_Mur4 SINE Alu -7 143 1 1 886 285 219 62 10 chr6 39544478 39544493 -109972544 + PB1D7 SINE Alu 40 78 -71 1 886 233 179 18 18 chr6 39544493 39544550 -109972487 + 4.5SRNA scRNA scRNA 32 88 -6 1 886 285 219 62 10 chr6 39544550 39544573 -109972464 + PB1D7 SINE Alu 79 145 -4 1 886 548 248 36 21 chr6 39544575 39544715 -109972322 + B1_Mur2 SINE Alu 5 146 -3 1 886 186 103 0 0 chr6 39544858 39544887 -109972150 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 886 228 317 46 92 chr6 39545224 39545377 -109971660 + B4A SINE B4 2 147 -145 1 886 299 250 145 43 chr6 39545870 39545987 -109971050 - ID_B1 SINE B4 0 224 96 1 886 246 261 20 129 chr6 39545900 39546001 -109971036 - B1F2 SINE Alu -59 90 1 1 886 1074 88 0 26 chr6 39547182 39547333 -109969704 - B1_Mus1 SINE Alu 0 148 2 1 886 441 302 45 32 chr6 39547537 39547691 -109969346 + RSINE1 SINE B4 5 160 -5 1 886 21 0 0 0 chr6 39548376 39548397 -109968640 + AT_rich Low_complexity Low_complexity 1 21 0 1 886 742 202 214 0 chr6 39548411 39548579 -109968458 - B3 SINE B2 -12 204 1 1 886 326 233 162 128 chr6 39548821 39548871 -109968166 + ID_B1 SINE B4 53 107 -117 1 886 366 257 19 39 chr6 39548871 39548985 -109968052 + B1F SINE Alu 3 114 -35 1 886 357 159 0 0 chr6 39549003 39549066 -109967971 + (CAGAGA)n Simple_repeat Simple_repeat 3 65 0 1 886 226 286 89 30 chr6 39550034 39550135 -109966902 + PB1D7 SINE Alu 5 111 -9 1 886 2003 141 81 3 chr6 39550239 39550573 -109966464 - ORR1B1 LTR MaLR -9 385 26 1 886 202 164 198 5 chr6 39551313 39551364 -109965673 - MIR SINE MIR -35 227 173 1 886 887 155 138 5 chr6 39551652 39551847 -109965190 - URR1B DNA MER1_type -3 222 2 1 886 247 280 53 13 chr6 39555194 39555270 -109961767 + ID4 SINE ID 5 83 0 1 886 231 114 0 0 chr6 39557668 39557703 -109959334 + (A)n Simple_repeat Simple_repeat 1 35 0 1 886 723 207 0 27 chr6 39558382 39558531 -109958506 - B1_Mur4 SINE Alu 0 150 6 1 886 1201 91 26 36 chr6 39560695 39560889 -109956148 - B2_Mm2 SINE B2 -3 192 1 1 886 820 159 14 7 chr6 39560898 39561044 -109955993 - B1_Mur4 SINE Alu 0 150 4 1 886 276 256 122 0 chr6 39561094 39561176 -109955861 - PB1D10 SINE Alu -2 115 24 1 886 288 337 31 0 chr6 39561514 39561533 -109955504 + B4 SINE B4 67 88 -204 1 886 383 314 20 0 chr6 39561533 39561635 -109955402 + PB1D10 SINE Alu 1 104 -13 1 886 22 0 0 0 chr6 39561688 39561710 -109955327 + AT_rich Low_complexity Low_complexity 1 22 0 1 886 250 302 11 58 chr6 39562398 39562503 -109954534 - ID4 SINE ID -50 102 2 1 886 247 218 36 0 chr6 39562507 39562562 -109954475 - PB1D10 SINE Alu -6 111 55 1 886 207 0 0 0 chr6 39562586 39562609 -109954428 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 886 544 268 65 8 chr6 39564723 39564847 -109952190 + B1_Mur1 SINE Alu 2 132 -17 1 886 38 68 0 0 chr6 39564908 39564981 -109952056 + AT_rich Low_complexity Low_complexity 1 73 0 1 886 398 203 81 41 chr6 39565298 39565421 -109951616 + B3 SINE B2 84 211 -5 1 886 1199 28 7 7 chr6 39566410 39566556 -109950481 + B1_Mus1 SINE Alu 2 147 -1 1 886 192 97 0 0 chr6 39566569 39566600 -109950437 + (TAAAAA)n Simple_repeat Simple_repeat 2 32 0 1 886 584 106 11 0 chr6 39567385 39567479 -109949558 + (TTCC)n Simple_repeat Simple_repeat 3 97 0 1 886 686 280 15 2 chr6 39567493 39567669 -109949368 + B3A SINE B2 1 178 -38 1 886 341 80 353 29 chr6 39567972 39568074 -109948963 - B2_Mm2 SINE B2 -14 181 47 1 886 1221 119 11 0 chr6 39568120 39568296 -109948741 - B2_Mm1t SINE B2 -14 179 2 1 886 243 260 26 0 chr6 39568296 39568373 -109948664 + Charlie2b DNA MER1_type 1899 1977 -805 1 886 607 101 47 7 chr6 39568461 39568563 -109948474 - B2_Mm2 SINE B2 -110 106 5 1 886 277 232 112 31 chr6 39568569 39568667 -109948370 + Charlie2b DNA MER1_type 2616 2721 -61 1 886 516 99 6 25 chr6 39568636 39568740 -109948297 + B1_Mus2 SINE Alu 24 147 0 1 886 245 217 28 42 chr6 39568759 39568831 -109948206 + Charlie2b DNA MER1_type 2706 2776 -6 1 886 384 230 0 44 chr6 39569231 39569322 -109947715 + ID_B1 SINE B4 80 166 -58 1 886 1186 54 0 0 chr6 39569355 39569502 -109947535 - B1_Mus2 SINE Alu 0 147 1 1 886 1250 71 59 0 chr6 39569531 39569700 -109947337 - B2_Mm1t SINE B2 -14 179 1 1 886 21 0 0 0 chr6 39569705 39569726 -109947311 + AT_rich Low_complexity Low_complexity 1 21 0 1 886 458 356 68 103 chr6 39569736 39570023 -109947014 + MLT1G1 LTR MaLR 165 495 -84 1 886 538 253 144 11 chr6 39570054 39570242 -109946795 - B3 SINE B2 0 216 4 1 886 580 276 0 0 chr6 39570250 39570377 -109946660 - B1_Mur1 SINE Alu 0 149 23 1 886 325 314 123 9 chr6 39570389 39570495 -109946542 - B3A SINE B2 -7 191 74 1 886 673 130 32 155 chr6 39570495 39570650 -109946387 - B1_Mur4 SINE Alu -14 136 1 1 886 367 107 0 26 chr6 39570740 39570817 -109946220 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 886 811 314 18 4 chr6 39571001 39571282 -109945755 - B4A SINE B4 -7 285 1 1 886 564 200 91 96 chr6 39571939 39572138 -109944899 - B3A SINE B2 0 198 1 1 886 442 255 181 29 chr6 39572774 39573012 -109944025 - B4A SINE B4 -18 274 1 1 886 432 236 59 13 chr6 39573162 39573287 -109943750 - B1_Mur1 SINE Alu 0 120 2 1 886 272 346 107 38 chr6 39574509 39574668 -109942369 + MER5B DNA MER1_type 9 178 0 1 886 477 167 156 0 chr6 39575112 39575202 -109941835 - PB1D9 SINE Alu -14 106 3 1 886 622 202 176 27 chr6 39575206 39575394 -109941643 - B3 SINE B2 0 216 1 1 886 1285 64 6 11 chr6 39576198 39576372 -109940665 + B2_Mm1t SINE B2 2 174 -19 1 886 22 0 0 0 chr6 39576377 39576399 -109940638 + AT_rich Low_complexity Low_complexity 1 22 0 1 886 312 265 118 0 chr6 39576433 39576569 -109940468 - Charlie1a DNA MER1_type -11 1444 1293 1 886 322 314 33 17 chr6 39576623 39576743 -109940294 - Charlie1a DNA MER1_type -274 1181 1060 1 886 352 305 75 22 chr6 39577145 39577227 -109939810 - ID_B1 SINE B4 0 224 136 1 886 305 22 0 0 chr6 39577227 39577272 -109939765 - L1Md_T LINE L1 0 6582 6538 1 886 352 305 75 22 chr6 39577272 39577323 -109939714 - ID_B1 SINE B4 -89 135 85 1 886 23 0 0 0 chr6 39577328 39577351 -109939686 + AT_rich Low_complexity Low_complexity 1 23 0 1 886 656 199 44 30 chr6 39577453 39577588 -109939449 - B1_Mur2 SINE Alu -12 137 1 1 886 768 203 7 0 chr6 39579292 39579435 -109937602 - B1_Mur2 SINE Alu -4 145 2 2 886 194 333 18 0 chr6 39579512 39579569 -109937468 + L2a LINE L2 3351 3408 -18 2 886 537 233 15 92 chr6 39579986 39580172 -109936865 - B3A SINE B2 -1 215 35 2 886 274 311 50 25 chr6 39580775 39580976 -109936061 - L1M4 LINE L1 -898 5546 5341 2 886 870 217 86 0 chr6 39581137 39581335 -109935702 - B3 SINE B2 -1 215 1 2 886 567 274 136 40 chr6 39581516 39581988 -109935049 - L1M4 LINE L1 -946 5200 4684 2 886 332 248 47 56 chr6 39582023 39582130 -109934907 - PB1D10 SINE Alu -11 106 1 2 886 227 325 30 71 chr6 39582158 39582327 -109934710 - L1M4 LINE L1 -1483 4663 4502 2 886 326 167 164 52 chr6 39582532 39582681 -109934356 + L1MD LINE L1 4866 5026 -1120 2 110 422 285 103 14 chr6 39583665 39583811 -109933226 - MER5A1 DNA MER1_type -6 160 2 2 887 358 167 15 15 chr6 39583878 39583945 -109933092 - L2 LINE L2 -1346 2073 2007 2 887 1059 64 43 0 chr6 39584123 39584263 -109932774 + B1_Mus2 SINE Alu 1 146 -1 2 887 221 75 25 0 chr6 39584270 39584310 -109932727 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2 887 268 231 0 0 chr6 39585000 39585052 -109931985 + PB1D9 SINE Alu 5 56 -64 2 887 247 314 143 8 chr6 39585223 39585342 -109931695 - Charlie2b DNA MER1_type -33 2749 2615 2 887 369 264 264 0 chr6 39585367 39585473 -109931564 - B1F2 SINE Alu -9 140 7 2 887 296 224 38 38 chr6 39585708 39585787 -109931250 - HAL1 LINE L1 -1816 691 613 2 887 419 310 72 23 chr6 39586120 39586341 -109930696 - HAL1 LINE L1 -2218 289 58 2 887 1624 32 0 0 chr6 39586641 39586830 -109930207 + B2_Mm1a SINE B2 2 190 -3 2 887 255 339 62 0 chr6 39587211 39587323 -109929714 - L2a LINE L2 -22 3404 3286 2 887 495 0 0 0 chr6 39587698 39587753 -109929284 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 887 1711 163 101 9 chr6 39587759 39588105 -109928932 + ORR1C2 LTR MaLR 2 379 -5 2 887 24 84 0 12 chr6 39588396 39588430 -109928607 + AT_rich Low_complexity Low_complexity 1 34 0 2 887 1098 88 7 0 chr6 39588430 39588577 -109928460 - B1_Mus1 SINE Alu 0 148 1 2 887 24 84 0 12 chr6 39588577 39588626 -109928411 + AT_rich Low_complexity Low_complexity 1 49 0 2 887 475 264 82 0 chr6 39588692 39588802 -109928235 - PB1D9 SINE Alu -1 119 1 2 887 612 159 75 0 chr6 39588997 39589104 -109927933 - PB1D9 SINE Alu 0 120 6 2 887 274 319 96 76 chr6 39590089 39590286 -109926751 - L3 LINE CR1 -357 4132 3932 2 887 21 0 0 0 chr6 39590989 39591010 -109926027 + AT_rich Low_complexity Low_complexity 1 21 0 2 887 744 312 53 6 chr6 39591032 39591374 -109925663 + L1ME3A LINE L1 5526 5883 -290 2 887 748 193 73 11 chr6 39591675 39591853 -109925184 + B2_Mm2 SINE B2 1 189 -6 2 887 236 212 0 15 chr6 39591885 39591952 -109925085 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 887 521 304 15 15 chr6 39592703 39592840 -109924197 - ID_B1 SINE B4 -3 221 85 2 887 711 188 50 14 chr6 39592840 39592980 -109924057 - B1_Mus2 SINE Alu -2 145 1 2 887 759 266 27 11 chr6 39593467 39593653 -109923384 + B3 SINE B2 1 189 -27 2 887 207 69 0 0 chr6 39593881 39593910 -109923127 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2 887 736 217 7 20 chr6 39594725 39594871 -109922166 + B1_Mus2 SINE Alu 4 147 0 2 887 393 285 199 6 chr6 39595190 39595356 -109921681 - B3A SINE B2 0 198 1 2 887 320 257 13 39 chr6 39596231 39596308 -109920729 - PB1D7 SINE Alu -41 79 5 2 887 396 264 104 0 chr6 39597567 39597673 -109919364 - PB1D10 SINE Alu 0 117 1 2 887 312 27 0 0 chr6 39598389 39598426 -109918611 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 887 707 159 48 14 chr6 39598792 39598939 -109918098 + L1M5 LINE L1 5591 5742 -382 2 887 281 322 11 22 chr6 39600165 39600257 -109916780 - ID_B1 SINE B4 -52 172 82 2 887 1185 193 203 8 chr6 39600280 39600546 -109916491 + ORR1C1 LTR MaLR 1 318 -60 2 887 24 0 0 0 chr6 39601097 39601121 -109915916 + AT_rich Low_complexity Low_complexity 1 24 0 2 887 27 0 0 0 chr6 39601802 39601829 -109915208 + AT_rich Low_complexity Low_complexity 1 27 0 2 887 520 291 99 19 chr6 39602447 39602607 -109914430 - B4A SINE B4 -6 286 114 2 887 2117 180 43 83 chr6 39602607 39603055 -109913982 - RMER6A LTR ERVK 0 756 323 2 887 1186 41 0 0 chr6 39603055 39603201 -109913836 - B1_Mus2 SINE Alu 0 147 2 2 887 2117 180 43 83 chr6 39603201 39603266 -109913771 - RMER6A LTR ERVK -434 322 259 2 887 240 35 0 0 chr6 39603266 39603295 -109913742 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2 887 2117 180 43 83 chr6 39603295 39603319 -109913718 - RMER6A LTR ERVK -498 258 240 2 887 1448 80 155 29 chr6 39604115 39604360 -109912677 - RMER6A LTR ERVK -480 276 1 2 887 483 285 0 31 chr6 39604360 39604482 -109912555 - B4A SINE B4 -173 119 2 2 887 526 244 23 64 chr6 39604873 39605044 -109911993 + RSINE1 SINE B4 2 165 0 2 887 27 0 0 0 chr6 39606226 39606253 -109910784 + AT_rich Low_complexity Low_complexity 1 27 0 2 887 2919 144 39 14 chr6 39606479 39606994 -109910043 + RLTR12B LTR ERVK 1 528 0 2 887 1175 218 209 63 chr6 39607034 39607460 -109909577 + MT2A LTR ERVL 6 493 -40 2 887 227 132 14 29 chr6 39607484 39607554 -109909483 + MT2A LTR ERVL 462 530 -3 2 887 255 152 0 0 chr6 39608030 39608076 -109908961 + (TTA)n Simple_repeat Simple_repeat 3 48 0 2 887 210 212 0 0 chr6 39608278 39608311 -109908726 - RSINE1 SINE B4 -125 40 8 2 887 269 304 91 50 chr6 39608334 39608455 -109908582 - B4A SINE B4 -12 280 155 2 887 224 272 0 124 chr6 39608625 39608818 -109908219 + (ACTG)n Simple_repeat Simple_repeat 3 171 0 2 887 310 310 43 34 chr6 39608882 39608999 -109908038 + RSINE1 SINE B4 48 165 0 2 887 783 191 0 0 chr6 39609204 39609335 -109907702 - B1_Mur4 SINE Alu -17 133 3 2 887 473 267 8 25 chr6 39609799 39609918 -109907119 - PB1D10 SINE Alu 0 117 1 2 887 1151 55 0 20 chr6 39610098 39610247 -109906790 - B1_Mus2 SINE Alu 0 147 2 2 887 483 261 9 26 chr6 39610561 39610675 -109906362 - PB1D9 SINE Alu -8 112 1 2 887 249 256 56 79 chr6 39610607 39610696 -109906341 - MT2B2 LTR ERVL -362 222 136 2 887 207 0 0 0 chr6 39610998 39611021 -109906016 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 887 26 0 0 0 chr6 39611146 39611172 -109905865 + AT_rich Low_complexity Low_complexity 1 26 0 2 887 507 174 82 9 chr6 39611294 39611404 -109905633 - B1_Mur4 SINE Alu 0 150 33 2 887 215 283 0 0 chr6 39613495 39613541 -109903496 - B1F2 SINE Alu -66 83 38 2 887 356 212 11 56 chr6 39613583 39613673 -109903364 - PB1D9 SINE Alu 0 120 35 2 887 414 0 0 0 chr6 39613967 39614013 -109903024 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 887 21 0 0 0 chr6 39614444 39614465 -109902572 + AT_rich Low_complexity Low_complexity 1 21 0 2 887 243 61 0 0 chr6 39615367 39615400 -109901637 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 887 1016 127 17 28 chr6 39615624 39615802 -109901235 - URR1B DNA MER1_type -1 224 49 2 887 602 234 82 1 chr6 39615985 39616136 -109900901 - B3 SINE B2 -4 212 50 2 887 261 333 91 0 chr6 39616693 39616792 -109900245 - PB1D10 SINE Alu -7 110 3 2 887 688 256 154 39 chr6 39616923 39617183 -109899854 + B4A SINE B4 3 292 0 2 887 514 211 0 44 chr6 39617870 39617984 -109899053 + PB1D9 SINE Alu 2 110 -10 2 887 799 291 84 91 chr6 39618120 39618525 -109898512 - MER82 DNA MER2_type -103 550 149 2 887 24 0 0 0 chr6 39618531 39618555 -109898482 + AT_rich Low_complexity Low_complexity 1 24 0 2 887 1143 72 0 0 chr6 39618679 39618817 -109898220 + B1_Mus2 SINE Alu 1 138 -9 2 887 327 227 91 0 chr6 39618916 39619004 -109898033 - ID_B1 SINE B4 -1 223 128 2 887 221 324 60 77 chr6 39618920 39619037 -109898000 - PB1D7 SINE Alu -5 115 1 2 887 2459 161 5 30 chr6 39619160 39619588 -109897449 + MTC LTR MaLR 5 421 0 2 887 243 264 69 0 chr6 39619970 39620042 -109896995 + MIRc SINE MIR 172 248 -20 2 887 1398 219 161 6 chr6 39620396 39620749 -109896288 + MTD LTR MaLR 3 410 -9 2 887 456 232 108 29 chr6 39620782 39620884 -109896153 + PB1D10 SINE Alu 2 111 -6 2 887 682 283 27 80 chr6 39620890 39621078 -109895959 + B4 SINE B4 2 179 -113 2 887 762 289 71 7 chr6 39621066 39621298 -109895739 + B4 SINE B4 13 286 -6 2 887 292 292 93 60 chr6 39621633 39621815 -109895222 + MER34A LTR ERV1 355 542 -29 2 887 371 234 0 13 chr6 39622061 39622138 -109894899 - ID4 SINE ID -11 72 1 2 887 474 18 0 0 chr6 39622270 39622325 -109894712 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 887 335 351 51 36 chr6 39622361 39622636 -109894401 - B4A SINE B4 -12 280 2 2 887 327 253 223 0 chr6 39622778 39622944 -109894093 - L1M5 LINE L1 -3156 2990 2788 2 887 325 317 57 9 chr6 39623071 39623176 -109893861 + PB1D10 SINE Alu 8 117 0 2 887 580 157 120 27 chr6 39623330 39623514 -109893523 - Lx7 LINE L1 0 7696 7496 2 887 1938 196 60 2 chr6 39623625 39624023 -109893014 + MTC LTR MaLR 1 421 0 2 887 296 306 91 10 chr6 39624161 39624180 -109892857 - PB1D10 SINE Alu -1 116 10 2 887 370 262 25 0 chr6 39624180 39624260 -109892777 - ID_B1 SINE B4 -52 172 91 2 887 363 249 30 17 chr6 39624277 39624436 -109892601 - L1ME2 LINE L1 -244 5940 5777 2 887 803 159 48 21 chr6 39624437 39624616 -109892421 - B3 SINE B2 -5 190 2 2 887 847 241 14 46 chr6 39625095 39625312 -109891725 - B3 SINE B2 -5 211 2 2 887 569 205 88 24 chr6 39625643 39625768 -109891269 - B1_Mur3 SINE Alu -14 135 3 2 887 569 277 19 43 chr6 39626047 39626209 -109890828 + B3A SINE B2 2 159 -39 2 887 405 0 0 0 chr6 39626214 39626259 -109890778 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 887 819 292 0 0 chr6 39626556 39626768 -109890269 - B3 SINE B2 -4 212 1 3 887 291 148 93 0 chr6 39626768 39626822 -109890215 - B1_Mus1 SINE Alu -89 59 1 3 887 591 179 26 18 chr6 39626880 39627010 -109890027 + B1_Mur2 SINE Alu 17 148 -1 3 887 1147 116 17 6 chr6 39627026 39627200 -109889837 + B2_Mm2 SINE B2 2 177 -18 3 887 2456 107 21 8 chr6 39627683 39628059 -109888978 + ORR1A2-int LTR MaLR 1583 1963 0 3 887 2076 100 82 13 chr6 39628059 39628363 -109888674 + ORR1A2 LTR MaLR 1 325 -2 3 887 2044 231 25 12 chr6 39628368 39628850 -109888187 - RMER1C Other Other -129 1213 726 3 887 708 226 51 7 chr6 39629236 39629374 -109887663 + RSINE1 SINE B4 3 146 -19 3 887 256 323 108 0 chr6 39629921 39630014 -109887023 - L2a LINE L2 -4 3422 3320 3 887 792 171 13 52 chr6 39630303 39630441 -109886596 + MTD LTR MaLR 1 132 -289 3 887 802 188 116 5 chr6 39630441 39630639 -109886398 + RLTR17 LTR ERVK 2 221 -471 3 887 329 211 39 26 chr6 39630634 39630712 -109886325 + RLTR17 LTR ERVK 611 689 -3 3 887 396 168 30 13 chr6 39630712 39630783 -109886254 + MTD LTR MaLR 138 210 -209 3 887 398 220 10 10 chr6 39630783 39630884 -109886153 + Lx7 LINE L1 7205 7305 -391 3 887 26 50 0 0 chr6 39630958 39630998 -109886039 + AT_rich Low_complexity Low_complexity 1 40 0 3 887 1030 197 71 65 chr6 39631003 39631340 -109885697 + Lx7 LINE L1 7358 7696 0 3 887 1124 159 31 40 chr6 39631350 39631573 -109885464 + MTD LTR MaLR 193 413 -6 3 887 237 326 110 22 chr6 39632124 39632215 -109884822 - PB1D10 SINE Alu -8 109 11 3 887 1124 62 7 7 chr6 39632234 39632380 -109884657 + B1_Mus2 SINE Alu 2 147 0 3 887 384 232 94 10 chr6 39632640 39632736 -109884301 - PB1D9 SINE Alu 0 120 17 3 887 452 361 13 6 chr6 39632836 39632992 -109884045 + RSINE1 SINE B4 5 161 -4 3 887 1271 248 14 24 chr6 39633218 39633515 -109883522 + ORR1D-int LTR MaLR 869 1162 -208 3 887 238 267 158 13 chr6 39633515 39633591 -109883446 + RSINE1 SINE B4 47 133 -32 3 887 22 35 0 0 chr6 39633702 39633731 -109883306 + AT_rich Low_complexity Low_complexity 1 29 0 3 887 791 290 41 29 chr6 39633732 39634077 -109882960 + L1MB3 LINE L1 5284 5632 -548 3 887 338 338 0 0 chr6 39634301 39634375 -109882662 + RSINE1 SINE B4 92 165 0 3 887 1173 82 0 0 chr6 39634419 39634566 -109882471 + B1_Mus1 SINE Alu 1 147 -1 3 887 394 198 179 0 chr6 39634743 39634849 -109882188 + L1MB3 LINE L1 5836 5960 -223 3 887 225 0 0 0 chr6 39634931 39634956 -109882081 + (T)n Simple_repeat Simple_repeat 1 25 0 3 887 1195 55 0 0 chr6 39634956 39635102 -109881935 - B1_Mus2 SINE Alu 0 147 2 3 887 1091 108 91 0 chr6 39635182 39635358 -109881679 - B2_Mm2 SINE B2 -2 193 2 3 887 1147 77 7 0 chr6 39635724 39635867 -109881170 - B1_Mus2 SINE Alu -2 145 2 3 887 280 302 144 14 chr6 39636300 39636506 -109880531 + MIRb SINE MIR 3 241 -27 3 887 1419 65 27 0 chr6 39636950 39637135 -109879902 + B2_Mm2 SINE B2 1 190 -5 3 887 234 62 0 0 chr6 39637224 39637256 -109879781 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 3 887 393 203 13 51 chr6 39637256 39637334 -109879703 - B1F SINE Alu -12 137 63 3 887 1635 32 5 0 chr6 39637807 39637997 -109879040 - B2_Mm1t SINE B2 -1 192 2 3 887 235 247 64 13 chr6 39638562 39638640 -109878397 + L1MA4 LINE L1 5855 5936 -364 3 887 272 79 0 0 chr6 39638772 39638810 -109878227 + MTEb LTR MaLR 1 38 -341 3 887 1332 84 6 11 chr6 39638820 39639001 -109878036 - B2_Mm2 SINE B2 -14 181 2 3 887 24 0 0 0 chr6 39639011 39639035 -109878002 + AT_rich Low_complexity Low_complexity 1 24 0 3 887 836 115 6 144 chr6 39639049 39639222 -109877815 + B1_Mur4 SINE Alu 2 150 0 3 887 1096 235 103 48 chr6 39639351 39639709 -109877328 + RLTR18B LTR ERVK 77 454 -58 3 887 333 315 0 22 chr6 39639721 39639812 -109877225 + RSINE1 SINE B4 77 165 0 3 887 297 0 0 0 chr6 39639813 39639846 -109877191 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 887 226 188 81 30 chr6 39639992 39640091 -109876946 + L1_Mur3 LINE L1 3199 3302 -2575 3 887 519 198 52 126 chr6 39640084 39640137 -109876900 + L1_Mur3 LINE L1 4397 4452 -1428 3 887 1212 68 0 0 chr6 39640137 39640285 -109876752 + B1_Mus1 SINE Alu 1 148 0 3 887 519 198 52 126 chr6 39640285 39640422 -109876615 + L1_Mur3 LINE L1 4453 4573 -1307 3 887 556 222 24 64 chr6 39640644 39640769 -109876268 - B1_Mur1 SINE Alu -29 120 1 3 887 1021 185 22 0 chr6 39640802 39640980 -109876057 + B3 SINE B2 8 189 -27 3 887 337 263 165 21 chr6 39641055 39641152 -109875885 - B3 SINE B2 -102 114 4 3 887 203 175 0 0 chr6 39641535 39641575 -109875462 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 3 887 853 113 48 27 chr6 39642213 39642359 -109874678 + B1_Mur3 SINE Alu 1 149 0 3 887 235 248 77 5 chr6 39642955 39643024 -109874013 + MIR SINE MIR 55 135 -133 3 887 4080 178 38 14 chr6 39643259 39644022 -109873015 + RLTR25A LTR ERVK 1 781 -322 3 887 782 218 50 0 chr6 39644015 39644194 -109872843 + MTEb LTR MaLR 163 350 -29 3 887 728 230 0 0 chr6 39644245 39644384 -109872653 - B1_Mur4 SINE Alu -10 140 2 3 887 1239 110 20 20 chr6 39644542 39644697 -109872340 + B2_Mm2 SINE B2 1 153 -42 3 887 417 123 0 0 chr6 39644697 39644762 -109872275 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 887 1239 110 20 20 chr6 39644762 39644801 -109872236 + B2_Mm2 SINE B2 154 195 0 3 887 691 240 20 7 chr6 39645053 39645200 -109871837 - B1F2 SINE Alu 0 149 1 3 887 26 0 0 0 chr6 39645242 39645268 -109871769 + AT_rich Low_complexity Low_complexity 1 26 0 3 887 520 226 62 46 chr6 39645268 39645398 -109871639 - RSINE1 SINE B4 -31 134 3 3 887 614 258 6 30 chr6 39645433 39645597 -109871440 + RSINE1 SINE B4 2 161 -4 3 887 433 278 19 0 chr6 39645647 39645755 -109871282 + PB1D10 SINE Alu 1 110 -7 3 887 363 23 0 0 chr6 39646402 39646446 -109870591 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 887 421 263 40 0 chr6 39646465 39646564 -109870473 + B3A SINE B2 1 103 -95 3 887 1053 219 89 39 chr6 39646562 39646819 -109870218 + MTD LTR MaLR 10 279 -140 3 887 207 0 0 0 chr6 39646854 39646877 -109870160 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 3 887 417 260 0 71 chr6 39647018 39647130 -109869907 + B1_Mur2 SINE Alu 41 144 -5 3 887 1021 192 53 73 chr6 39647221 39647468 -109869569 + RMER10B LTR ERVL 1 242 -156 3 887 900 201 73 25 chr6 39647674 39647878 -109869159 + RMER10B LTR ERVL 29 242 -156 3 887 318 315 113 49 chr6 39647878 39648142 -109868895 + L1MC LINE L1 3774 4052 -2094 3 887 1130 128 109 26 chr6 39648142 39648335 -109868702 - B3 SINE B2 -6 210 2 3 887 318 315 113 49 chr6 39648335 39648440 -109868597 + L1MC LINE L1 4053 4166 -1980 3 887 252 0 0 0 chr6 39648589 39648617 -109868420 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 887 263 49 24 0 chr6 39648733 39648774 -109868263 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3 887 1174 75 6 0 chr6 39648774 39648933 -109868104 - B2_Mm1t SINE B2 -33 160 1 3 887 233 115 115 0 chr6 39648933 39648994 -109868043 + (TTTA)n Simple_repeat Simple_repeat 3 70 0 3 887 313 268 187 16 chr6 39649001 39649183 -109867854 + B3 SINE B2 3 215 -1 3 887 2404 114 47 13 chr6 39649403 39649475 -109867562 + ORR1B1 LTR MaLR 1 72 -322 3 887 1456 73 0 10 chr6 39649475 39649669 -109867368 + B2_Mm2 SINE B2 2 193 -2 3 887 2404 114 47 13 chr6 39649669 39649977 -109867060 + ORR1B1 LTR MaLR 73 394 0 3 887 300 245 100 36 chr6 39650642 39650752 -109866285 - L1ME3B LINE L1 -190 6050 5934 3 887 369 176 37 56 chr6 39650990 39651098 -109865939 - Lx9 LINE L1 -6 7638 7533 3 887 838 125 16 0 chr6 39651267 39651395 -109865642 - B1_Mus1 SINE Alu 0 148 19 3 887 225 0 0 0 chr6 39651395 39651420 -109865617 + (CCA)n Simple_repeat Simple_repeat 2 26 0 3 887 1253 80 26 21 chr6 39651435 39651626 -109865411 - B2_Mm2 SINE B2 -3 192 1 3 887 725 139 305 6 chr6 39651667 39651841 -109865196 + URR1A DNA MER1_type 1 226 0 3 887 489 226 52 25 chr6 39651863 39652013 -109865024 + MER5A DNA MER1_type 11 160 -6 3 887 374 335 93 13 chr6 39652064 39652271 -109864766 - L1ME3B LINE L1 -669 5571 5352 3 887 237 65 0 0 chr6 39652271 39652302 -109864735 + (CCTA)n Simple_repeat Simple_repeat 4 34 0 3 887 300 333 95 14 chr6 39652302 39652329 -109864708 - L1ME3B LINE L1 -773 5351 5319 3 887 406 49 16 16 chr6 39652365 39652427 -109864610 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 887 660 207 234 5 chr6 39652440 39652658 -109864379 - B4A SINE B4 -19 273 6 3 887 252 177 16 31 chr6 39652817 39652881 -109864156 - LTR83 LTR ERVL -137 643 581 3 887 477 244 0 92 chr6 39652946 39652983 -109864054 + B3 SINE B2 3 35 -181 3 887 399 56 0 0 chr6 39652983 39653037 -109864000 + (TATAA)n Simple_repeat Simple_repeat 4 57 0 3 887 477 244 0 92 chr6 39653037 39653130 -109863907 + B3 SINE B2 36 121 -95 3 887 259 194 73 15 chr6 39653098 39653166 -109863871 + B1_Mur1 SINE Alu 78 149 0 3 887 305 312 0 41 chr6 39653635 39653732 -109863305 - BC1_Mm scRNA scRNA -57 95 3 3 887 229 211 74 37 chr6 39653910 39653964 -109863073 + MLT1F2 LTR MaLR 75 130 -430 3 887 1124 111 55 0 chr6 39653990 39654171 -109862866 + B2_Mm2 SINE B2 2 192 -3 3 887 522 313 77 69 chr6 39654245 39654478 -109862559 + MLT1F2 LTR MaLR 316 550 -10 3 887 2065 97 9 51 chr6 39654503 39654839 -109862198 + RLTRETN_Mm LTR ERVK 1 322 0 3 887 468 362 36 56 chr6 39654935 39655184 -109861853 - B4A SINE B4 -3 289 46 3 887 1298 96 6 17 chr6 39655202 39655382 -109861655 + B2_Mm1t SINE B2 2 179 -14 3 887 331 68 371 19 chr6 39655449 39655554 -109861483 + B2_Mm2 SINE B2 50 191 -4 3 887 1626 146 156 26 chr6 39655555 39655894 -109861143 - ORR1B1 LTR MaLR -11 383 1 3 887 599 270 14 28 chr6 39656019 39656160 -109860877 - RSINE1 SINE B4 -24 141 3 3 887 1227 34 0 0 chr6 39656242 39656388 -109860649 + B1_Mus2 SINE Alu 2 147 0 3 887 924 211 78 22 chr6 39656554 39656733 -109860304 - B3 SINE B2 -27 189 1 3 887 2711 73 41 15 chr6 39656930 39657108 -109859929 - MTB LTR MaLR 0 400 221 3 887 185 65 0 31 chr6 39657108 39657140 -109859897 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 4 887 2711 73 41 15 chr6 39657140 39657167 -109859870 - MTB LTR MaLR -180 220 191 3 887 1139 88 0 0 chr6 39657167 39657314 -109859723 - B1_Mus1 SINE Alu 0 148 2 4 887 198 0 0 0 chr6 39657316 39657338 -109859699 + (C)n Simple_repeat Simple_repeat 1 22 0 4 887 2711 73 41 15 chr6 39657338 39657518 -109859519 - MTB LTR MaLR -210 190 2 3 887 663 146 131 0 chr6 39657891 39658021 -109859016 + B1_Mus1 SINE Alu 1 147 -1 4 887 198 0 0 0 chr6 39658838 39658860 -109858177 + (A)n Simple_repeat Simple_repeat 1 22 0 4 887 248 304 213 7 chr6 39659699 39659835 -109857202 - RSINE1 SINE B4 0 165 2 4 887 265 294 148 44 chr6 39659838 39660176 -109856861 - L1MEg LINE L1 -4817 1267 895 4 887 675 196 23 0 chr6 39660415 39660548 -109856489 + B1_Mur2 SINE Alu 1 136 -13 4 887 509 266 24 98 chr6 39660717 39660921 -109856116 + B3A SINE B2 32 216 0 4 887 1428 210 101 30 chr6 39661447 39661776 -109855261 - MTD LTR MaLR -43 376 1 4 887 361 162 0 24 chr6 39661972 39662054 -109854983 + (CATATA)n Simple_repeat Simple_repeat 3 82 0 4 887 305 331 71 26 chr6 39662279 39662434 -109854603 - MER20B DNA MER1_type -240 543 382 4 887 731 244 19 6 chr6 39662448 39662605 -109854432 - B4 SINE B4 -51 241 83 4 887 589 268 31 50 chr6 39662614 39662775 -109854262 - B3A SINE B2 0 198 41 4 887 232 312 54 54 chr6 39662880 39663029 -109854008 - B1F SINE Alu 0 149 1 4 887 421 289 26 9 chr6 39663229 39663344 -109853693 + RSINE1 SINE B4 25 141 -24 4 887 369 0 0 0 chr6 39663345 39663386 -109853651 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 887 534 57 0 0 chr6 39663386 39663455 -109853582 + (GA)n Simple_repeat Simple_repeat 2 71 0 4 887 1376 87 5 5 chr6 39663945 39664131 -109852906 + B2_Mm2 SINE B2 1 186 -9 4 887 240 143 0 0 chr6 39664208 39664250 -109852787 + (T)n Simple_repeat Simple_repeat 1 42 0 4 887 870 193 0 0 chr6 39664252 39664392 -109852645 - B1_Mur2 SINE Alu -7 142 3 4 887 229 430 10 0 chr6 39665011 39665111 -109851926 + PB1D10 SINE Alu 10 110 -7 4 887 507 180 71 9 chr6 39665130 39665242 -109851795 + B1_Mm SINE Alu 9 127 -20 4 887 26 30 0 0 chr6 39665246 39665279 -109851758 + AT_rich Low_complexity Low_complexity 1 33 0 4 887 272 240 40 30 chr6 39665323 39665422 -109851615 - MLT1J1 LTR MaLR -2 406 307 4 887 276 88 150 50 chr6 39665557 39665617 -109851420 + B1_Mur4 SINE Alu 84 149 -1 4 887 579 204 0 42 chr6 39665741 39665859 -109851178 - PB1D9 SINE Alu -7 113 1 4 887 403 299 41 89 chr6 39665864 39665957 -109851080 - MLT1J1 LTR MaLR -264 180 97 4 887 2374 87 16 0 chr6 39665957 39666279 -109850758 - ORR1A2 LTR MaLR 0 327 1 4 887 403 299 41 89 chr6 39666279 39666354 -109850683 - MLT1J1 LTR MaLR -348 96 20 4 887 190 274 88 62 chr6 39666361 39666474 -109850563 + L2a LINE L2 2357 2472 -947 4 887 263 288 14 0 chr6 39666551 39666624 -109850413 + ID4_ SINE ID 2 75 -8 4 887 763 230 6 38 chr6 39666872 39667030 -109850007 + B4A SINE B4 140 292 0 4 887 194 320 185 40 chr6 39667175 39667478 -109849559 + L2a LINE L2 2918 3264 -162 4 887 465 279 26 73 chr6 39667491 39667642 -109849395 + B1_Mur2 SINE Alu 1 144 -5 4 887 907 235 9 62 chr6 39667642 39667869 -109849168 + B3 SINE B2 1 215 -1 4 887 534 254 14 35 chr6 39667919 39668062 -109848975 - ID_B1 SINE B4 -1 223 84 4 887 712 230 7 20 chr6 39669197 39669348 -109847689 - B1_Mur4 SINE Alu 0 150 2 4 887 293 236 178 14 chr6 39669491 39669630 -109847407 + B4A SINE B4 1 175 -117 4 887 952 53 90 8 chr6 39669719 39669852 -109847185 + B1_Mus1 SINE Alu 5 148 0 4 887 210 268 0 49 chr6 39670033 39670048 -109846989 + A-rich Low_complexity Low_complexity 4 18 0 4 887 186 103 0 0 chr6 39670048 39670077 -109846960 + (CTTA)n Simple_repeat Simple_repeat 3 31 0 4 887 210 268 0 49 chr6 39670077 39670091 -109846946 + A-rich Low_complexity Low_complexity 19 32 0 4 887 634 154 16 49 chr6 39670091 39670214 -109846823 + PB1D9 SINE Alu 1 119 -1 4 887 210 268 0 49 chr6 39670214 39670285 -109846752 + A-rich Low_complexity Low_complexity 33 99 0 4 887 240 59 0 0 chr6 39670374 39670408 -109846629 + (A)n Simple_repeat Simple_repeat 1 34 0 4 887 351 245 61 10 chr6 39672511 39672610 -109844427 + ID_B1 SINE B4 95 198 -26 4 887 276 154 0 0 chr6 39674046 39674098 -109842939 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 4 887 495 118 0 0 chr6 39675203 39675279 -109841758 + (CCG)n Simple_repeat Simple_repeat 2 77 0 4 887 297 176 45 34 chr6 39675328 39675416 -109841621 + G-rich Low_complexity Low_complexity 3 91 0 4 887 632 137 186 39 chr6 39677022 39677151 -109839886 - B1_Mur3 SINE Alu 0 149 2 4 887 793 182 7 20 chr6 39677748 39677886 -109839151 + B1_Mur4 SINE Alu 1 138 -12 4 887 186 43 0 0 chr6 39677886 39677909 -109839128 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 887 793 182 7 20 chr6 39677909 39677921 -109839116 + B1_Mur4 SINE Alu 139 149 -1 4 887 693 227 40 28 chr6 39677953 39678130 -109838907 + RLTR42-int LTR ERVK 4253 4431 -1091 4 887 734 219 79 5 chr6 39678610 39678812 -109838225 + MTD LTR MaLR 203 419 0 4 887 225 143 0 23 chr6 39678961 39679004 -109838033 + B1_Mur4 SINE Alu 102 143 -7 4 887 691 351 115 32 chr6 39679019 39679455 -109837582 + MLT1G LTR MaLR 15 486 -105 4 887 283 238 119 37 chr6 39679631 39679740 -109837297 + PB1D7 SINE Alu 1 118 -2 4 887 586 150 186 32 chr6 39679925 39680049 -109836988 - B1_Mur1 SINE Alu -6 143 1 4 887 992 112 19 0 chr6 39680810 39680970 -109836067 + (GGAGAA)n Simple_repeat Simple_repeat 5 167 0 4 887 453 186 25 8 chr6 39680974 39681093 -109835944 + G-rich Low_complexity Low_complexity 2 122 0 4 887 704 126 22 33 chr6 39681092 39681272 -109835765 + GA-rich Low_complexity Low_complexity 3 180 0 4 887 204 217 0 0 chr6 39681281 39681327 -109835710 + G-rich Low_complexity Low_complexity 6 51 0 4 887 735 12 0 0 chr6 39681330 39681414 -109835623 + (GAA)n Simple_repeat Simple_repeat 3 86 0 4 887 741 124 25 11 chr6 39681422 39681579 -109835458 - ORR1C2 LTR MaLR -237 147 1 4 887 928 203 5 62 chr6 39681624 39681834 -109835203 - B3A SINE B2 0 198 1 4 887 361 273 10 0 chr6 39681954 39682053 -109834984 + MER44B DNA MER2_type 16 115 -435 4 887 516 207 79 47 chr6 39682089 39682216 -109834821 - B1F2 SINE Alu -10 139 9 4 887 1026 297 64 43 chr6 39682218 39682658 -109834379 + MER44B DNA MER2_type 97 545 -5 4 887 236 326 87 22 chr6 39682729 39682867 -109834170 + RSINE1 SINE B4 3 149 -16 4 887 234 296 99 0 chr6 39683083 39683154 -109833883 - ID4 SINE ID -4 79 2 4 887 228 189 18 70 chr6 39683163 39683220 -109833817 - ID_B1 SINE B4 -2 222 169 4 887 396 225 0 11 chr6 39683169 39683259 -109833778 - PB1D10 SINE Alu -8 109 21 4 887 1053 50 0 0 chr6 39683377 39683517 -109833520 + (TG)n Simple_repeat Simple_repeat 2 141 0 4 887 573 246 32 0 chr6 39684016 39684142 -109832895 + ID_B1 SINE B4 86 215 -9 4 887 379 279 60 37 chr6 39684022 39684156 -109832881 + B1_Mus1 SINE Alu 12 148 0 4 887 233 230 66 57 chr6 39684158 39684264 -109832773 + L1MC4 LINE L1 7933 8039 -3 4 887 270 0 0 0 chr6 39684559 39684589 -109832448 + (TTG)n Simple_repeat Simple_repeat 1 30 0 4 887 1212 61 0 0 chr6 39684626 39684773 -109832264 - B1_Mus2 SINE Alu 0 147 1 4 887 529 263 0 62 chr6 39685255 39685401 -109831636 + B1_Mur2 SINE Alu 2 138 -11 4 887 266 365 146 20 chr6 39685749 39686051 -109830986 - MLT1A LTR MaLR -1 373 34 4 887 815 168 0 0 chr6 39687117 39687254 -109829783 + B1_Mur4 SINE Alu 1 137 -13 4 887 369 0 0 0 chr6 39687254 39687295 -109829742 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 4 887 1858 129 83 3 chr6 39687883 39688209 -109828828 + MTC LTR MaLR 1 352 -69 4 887 389 202 141 0 chr6 39689279 39689378 -109827659 - MTE2b LTR MaLR 0 379 267 4 887 800 241 51 85 chr6 39689426 39689470 -109827567 - MTE2b LTR MaLR -114 265 241 4 887 2436 104 82 92 chr6 39689470 39689957 -109827080 - RLTR45 LTR ERVK 0 482 1 4 887 800 241 51 85 chr6 39689957 39690148 -109826889 - MTE2b LTR MaLR -139 240 38 4 887 486 0 0 0 chr6 39690570 39690624 -109826413 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 887 699 263 83 9 chr6 39690624 39690854 -109826183 + MLT2B4 LTR ERVL 34 280 -276 4 887 1998 219 55 20 chr6 39690965 39691366 -109825671 - Lx6 LINE L1 -180 7280 6866 4 887 2791 128 25 7 chr6 39691359 39691694 -109825343 - L1_Mur3 LINE L1 -349 5531 5190 4 887 282 29 0 0 chr6 39691694 39691729 -109825308 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 4 887 2791 128 25 7 chr6 39691729 39691841 -109825196 - L1_Mur3 LINE L1 -691 5189 5076 4 887 9509 141 96 148 chr6 39691838 39693798 -109823239 - L1_Mur3 LINE L1 -2002 3878 1807 4 887 1677 168 77 0 chr6 39693798 39694108 -109822929 - ORR1B1 LTR MaLR -8 386 53 4 887 9509 141 96 148 chr6 39694108 39694857 -109822180 - L1_Mur3 LINE L1 -2002 1806 1013 4 887 1462 69 11 0 chr6 39694857 39695045 -109821992 - B2_Mm2 SINE B2 -5 190 1 4 887 5883 170 14 44 chr6 39695045 39695922 -109821115 - L1_Mur3 LINE L1 -6716 1012 173 4 887 289 221 0 13 chr6 39695922 39696000 -109821037 + B1_Mur2 SINE Alu 73 149 0 4 887 405 0 0 0 chr6 39696002 39696047 -109820990 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 4 887 375 285 43 7 chr6 39696081 39696219 -109820818 + B1F SINE Alu 3 145 -4 4 887 231 360 33 73 chr6 39696354 39696504 -109820533 + LTR78 LTR ERV1 851 994 -310 4 887 23 54 0 0 chr6 39696595 39696632 -109820405 + AT_rich Low_complexity Low_complexity 1 37 0 4 887 1025 214 27 50 chr6 39696700 39696921 -109820116 - B3 SINE B2 0 216 1 4 887 316 280 47 81 chr6 39697050 39697199 -109819838 + MIRb SINE MIR 117 259 -3 4 887 21 71 0 0 chr6 39697509 39697551 -109819486 + AT_rich Low_complexity Low_complexity 1 42 0 4 887 201 74 0 0 chr6 39697956 39697983 -109819054 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 887 390 118 29 0 chr6 39698156 39698224 -109818813 - B1_Mur3 SINE Alu -1 148 79 4 887 486 263 0 17 chr6 39698240 39698356 -109818681 - PB1D10 SINE Alu -3 114 1 4 887 238 197 14 96 chr6 39698357 39698430 -109818607 + PB1 SINE Alu 53 119 -8 5 887 288 263 101 112 chr6 39698435 39698548 -109818489 + MER57D LTR ERV1 14 120 -291 5 887 996 108 0 0 chr6 39698548 39698696 -109818341 + (GAA)n Simple_repeat Simple_repeat 3 150 0 5 887 288 263 101 112 chr6 39698696 39698869 -109818168 + MER57D LTR ERV1 121 296 -115 5 887 738 237 152 0 chr6 39699129 39699306 -109817731 + B3 SINE B2 11 214 -2 5 887 400 261 155 43 chr6 39699675 39699791 -109817246 - PB1D10 SINE Alu 0 147 19 5 887 486 108 0 0 chr6 39700291 39700365 -109816672 + (A)n Simple_repeat Simple_repeat 1 74 0 5 887 560 188 116 8 chr6 39700482 39700611 -109816426 - B1_Mus1 SINE Alu 0 148 6 5 887 216 0 0 0 chr6 39700665 39700689 -109816348 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 5 887 398 269 77 0 chr6 39700713 39700817 -109816220 + PB1D7 SINE Alu 1 112 -8 5 887 493 292 8 0 chr6 39701298 39701418 -109815619 - B4A SINE B4 -169 123 3 5 887 699 234 0 0 chr6 39701454 39701591 -109815446 + B1_Mus2 SINE Alu 5 141 -6 5 887 1110 278 52 9 chr6 39701598 39701946 -109815091 - MER95 LTR ERV -21 410 48 5 887 252 41 39 39 chr6 39702514 39702565 -109814472 + (CAA)n Simple_repeat Simple_repeat 2 52 0 5 887 11682 42 0 2 chr6 39703004 39704464 -109812573 - L1Md_F2 LINE L1 -656 5926 4470 5 887 4858 52 14 33 chr6 39704465 39705097 -109811940 + L1Md_F2 LINE L1 5950 6572 -10 5 887 180 0 0 0 chr6 39705097 39705117 -109811920 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 887 963 133 7 0 chr6 39705231 39705366 -109811671 + B1_Mm SINE Alu 3 138 -9 5 887 219 103 0 0 chr6 39705367 39705406 -109811631 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 5 887 735 275 0 23 chr6 39705422 39705597 -109811440 + B3A SINE B2 27 197 -1 5 887 733 170 29 36 chr6 39705932 39706072 -109810965 + B1_Mur2 SINE Alu 1 139 -10 5 887 305 248 101 31 chr6 39706097 39706226 -109810811 - MER34B-int LTR ERV1 -1744 3612 3475 5 887 425 224 322 21 chr6 39706397 39706555 -109810482 + B4A SINE B4 2 230 -62 5 887 1545 53 5 0 chr6 39706788 39706975 -109810062 + B2_Mm1t SINE B2 2 189 -4 5 887 1291 236 43 4 chr6 39706976 39707253 -109809784 - Lx7 LINE L1 -1794 5902 5615 5 887 234 182 167 0 chr6 39707319 39707385 -109809652 - RMER15 LTR ERVL -92 483 407 5 887 249 222 19 0 chr6 39707696 39707750 -109809287 - L1_Rod LINE L1 -261 5586 5532 5 887 373 209 8 118 chr6 39707752 39707871 -109809166 - PB1D9 SINE Alu -2 118 13 5 887 773 160 157 18 chr6 39707944 39708230 -109808807 - RMER17C LTR ERVK 0 410 85 5 887 947 80 28 28 chr6 39708231 39708410 -109808627 + (GGAGA)n Simple_repeat Simple_repeat 1 179 0 5 887 622 198 11 123 chr6 39708410 39708676 -109808361 - RMER17C LTR ERVK -174 236 1 5 887 1296 174 172 44 chr6 39708691 39709057 -109807980 - RMER10A LTR ERVL -29 413 1 5 887 409 249 144 107 chr6 39709106 39709565 -109807472 - RMER17C-int LTR ERVK -77 3161 2686 5 887 604 267 78 90 chr6 39709676 39710087 -109806950 - MYSERV6-int LTR ERVK -2274 3863 3458 5 887 368 161 122 99 chr6 39710329 39710460 -109806577 - MYSERV6-int LTR ERVK -3058 3079 2946 5 887 754 252 87 38 chr6 39710596 39710915 -109806122 - MYSERV6-int LTR ERVK -1455 7504 7248 5 887 2850 55 142 139 chr6 39711053 39711562 -109805475 - RLTR1B LTR ERV1 0 512 3 5 887 875 102 0 23 chr6 39711888 39712019 -109805018 + Lx LINE L1 5870 5997 -657 5 887 967 74 0 0 chr6 39712027 39712162 -109804875 - B1_Mus1 SINE Alu 0 148 14 5 887 3193 82 60 52 chr6 39712162 39712549 -109804488 + Lx2 LINE L1 6490 6870 -127 5 887 456 19 0 0 chr6 39712549 39712602 -109804435 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 887 387 0 0 0 chr6 39712602 39712644 -109804393 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 887 3193 82 60 52 chr6 39712644 39712759 -109804278 + Lx2 LINE L1 6871 6995 -2 5 887 1467 22 55 22 chr6 39712815 39712997 -109804040 + B2_Mm1a SINE B2 2 189 -4 5 887 24 32 0 0 chr6 39713020 39713051 -109803986 + AT_rich Low_complexity Low_complexity 1 31 0 5 887 440 48 16 0 chr6 39713100 39713163 -109803874 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 887 291 176 14 29 chr6 39713219 39713289 -109803748 - RLTR19-int LTR ERVK -5173 964 896 5 887 309 51 0 0 chr6 39714283 39714322 -109802715 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 5 887 1012 72 0 0 chr6 39714324 39714463 -109802574 + B1_Mus1 SINE Alu 10 148 0 5 110 1201 204 119 47 chr6 39714455 39714857 -109802180 - RMER10A LTR ERVL -6 436 6 5 888 772 200 0 27 chr6 39714864 39715013 -109802024 - B1_Mur3 SINE Alu 0 149 5 5 888 959 250 5 0 chr6 39715069 39715285 -109801752 - L1_Mur3 LINE L1 -784 5096 4880 5 888 3562 298 62 11 chr6 39715354 39715369 -109801668 + Lx8 LINE L1 6188 6203 -1270 5 888 1598 48 0 0 chr6 39715369 39715555 -109801482 - B2_Mm1t SINE B2 -6 187 2 5 888 3562 298 62 11 chr6 39715555 39716754 -109800283 + Lx8 LINE L1 6204 7462 -11 5 888 22 56 0 0 chr6 39716764 39716800 -109800237 + AT_rich Low_complexity Low_complexity 1 36 0 5 888 354 258 0 0 chr6 39716816 39716882 -109800155 + B4A SINE B4 223 288 -4 5 888 789 226 106 98 chr6 39717022 39717551 -109799486 - MER34B-int LTR ERV1 -2156 3200 2668 5 888 910 127 6 6 chr6 39717565 39717724 -109799313 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 5 888 450 319 55 7 chr6 39717797 39717942 -109799095 + RSINE1 SINE B4 14 165 0 5 888 249 83 0 0 chr6 39717960 39717996 -109799041 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 888 24 77 0 0 chr6 39717998 39718050 -109798987 + AT_rich Low_complexity Low_complexity 1 52 0 5 888 890 222 0 107 chr6 39718129 39718371 -109798666 - B3 SINE B2 0 216 1 5 888 472 194 31 126 chr6 39718612 39718771 -109798266 - B1_Mur1 SINE Alu -5 144 1 5 888 684 178 68 15 chr6 39718772 39718991 -109798046 - MER34B-int LTR ERV1 -3591 1345 1120 5 888 186 128 0 0 chr6 39719052 39719091 -109797946 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 888 235 185 37 0 chr6 39719216 39719270 -109797767 - MER67C LTR ERV1 -454 257 202 5 888 1477 220 125 39 chr6 39719498 39719986 -109797051 - RMER13A LTR ERVK -50 810 281 5 888 1892 212 59 19 chr6 39719988 39720187 -109796850 + RLTR16 LTR ERVK 1 209 -296 5 888 1771 141 31 126 chr6 39720187 39720404 -109796633 - RMER17C LTR ERVK 0 410 182 5 888 1229 55 4 16 chr6 39720404 39720661 -109796376 + (GAA)n Simple_repeat Simple_repeat 1 254 0 5 888 1771 141 31 126 chr6 39720661 39720895 -109796142 - RMER17C LTR ERVK -229 181 2 5 888 1892 212 59 19 chr6 39720895 39721166 -109795871 + RLTR16 LTR ERVK 210 489 -16 5 888 1602 170 7 7 chr6 39721239 39721523 -109795514 - RMER13A LTR ERVK -576 284 1 5 888 695 252 30 166 chr6 39721665 39722003 -109795034 - B4 SINE B4 0 292 1 5 888 722 249 27 27 chr6 39722130 39722316 -109794721 - B4A SINE B4 0 292 107 5 888 975 115 0 0 chr6 39722319 39722467 -109794570 + (TA)n Simple_repeat Simple_repeat 2 149 0 5 888 379 206 89 45 chr6 39723221 39723333 -109793704 - PB1D10 SINE Alu 0 117 1 5 888 954 259 34 20 chr6 39723430 39723725 -109793312 - L1M3 LINE L1 -409 5774 5476 5 888 565 164 7 103 chr6 39723726 39723818 -109793219 - B1_Mur1 SINE Alu 0 149 66 5 888 1637 26 0 21 chr6 39723818 39724011 -109793026 + B2_Mm1a SINE B2 2 190 -3 5 888 565 164 7 103 chr6 39724011 39724054 -109792983 - B1_Mur1 SINE Alu -84 65 27 5 888 827 138 0 0 chr6 39724144 39724274 -109792763 - B3 SINE B2 -86 130 1 5 888 479 219 67 118 chr6 39724279 39724493 -109792544 - L1M3 LINE L1 -692 5488 5279 5 888 1471 67 0 25 chr6 39724493 39724691 -109792346 - B2_Mm2 SINE B2 -1 194 2 5 888 474 219 67 118 chr6 39724691 39724714 -109792323 - L1M3 LINE L1 -897 5283 5263 5 888 266 286 13 0 chr6 39724714 39724791 -109792246 - PB1D10 SINE Alu -5 112 35 5 888 1220 42 0 0 chr6 39725586 39725728 -109791309 + B1_Mus1 SINE Alu 1 142 -6 5 888 730 97 184 0 chr6 39725749 39725863 -109791174 - B1_Mus1 SINE Alu -13 135 1 5 888 246 181 192 14 chr6 39726337 39726410 -109790627 - PB1 SINE Alu 0 127 42 5 888 348 315 159 11 chr6 39726423 39726699 -109790338 - L1MA9 LINE L1 -67 6245 5929 5 888 1117 86 98 0 chr6 39727451 39727614 -109789423 + B2_Mm2 SINE B2 1 179 -16 5 888 864 29 0 0 chr6 39727615 39727718 -109789319 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 5 888 282 325 32 76 chr6 39729113 39729363 -109787674 - L1M5 LINE L1 -361 5763 5525 5 888 324 284 36 18 chr6 39729653 39729764 -109787273 + CT-rich Low_complexity Low_complexity 5 117 0 5 888 331 250 0 0 chr6 39729997 39730061 -109786976 - tRNA-Ala-GCY_ tRNA tRNA -7 68 5 5 888 821 224 104 5 chr6 39730095 39730288 -109786749 - B3 SINE B2 -1 215 4 5 888 332 169 28 0 chr6 39730292 39730363 -109786674 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 5 888 207 69 0 0 chr6 39730359 39730388 -109786649 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 888 590 143 176 38 chr6 39730389 39730520 -109786517 - B1_Mur3 SINE Alu 0 149 1 5 888 370 263 120 7 chr6 39730540 39730674 -109786363 - B3 SINE B2 -31 164 30 5 888 285 214 21 97 chr6 39730824 39730917 -109786120 - PB1D7 SINE Alu -13 107 22 5 888 226 173 0 19 chr6 39731626 39731679 -109785358 + T-rich Low_complexity Low_complexity 3 54 0 5 888 216 0 0 0 chr6 39732551 39732575 -109784462 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5 888 393 289 0 0 chr6 39732640 39732744 -109784293 - B1_Mur1 SINE Alu -12 137 34 5 888 244 375 71 19 chr6 39732656 39732811 -109784226 - ID_B1 SINE B4 -25 199 37 5 888 659 142 0 0 chr6 39733059 39733165 -109783872 + B2_Mm2 SINE B2 2 107 -88 5 888 189 0 0 0 chr6 39733356 39733377 -109783660 + (TGG)n Simple_repeat Simple_repeat 1 21 0 5 888 1312 88 22 11 chr6 39733379 39733562 -109783475 + B2_Mm2 SINE B2 4 188 -7 5 888 718 241 10 52 chr6 39733569 39733762 -109783275 + B3 SINE B2 1 185 -31 5 888 527 43 14 0 chr6 39733885 39733955 -109783082 + (TC)n Simple_repeat Simple_repeat 1 71 0 5 888 237 108 0 0 chr6 39733991 39734028 -109783009 + B1_Mus1 SINE Alu 19 55 -93 5 888 417 298 0 9 chr6 39734160 39734275 -109782762 + PB1D10 SINE Alu 2 115 -2 5 888 236 293 37 0 chr6 39734770 39734852 -109782185 + PB1 SINE Alu 28 112 -15 5 888 311 225 53 6 chr6 39735008 39735178 -109781859 + (TA)n Simple_repeat Simple_repeat 2 179 0 6 888 604 130 87 0 chr6 39735178 39735293 -109781744 - B1_Mus2 SINE Alu 0 147 23 6 888 458 269 50 25 chr6 39735381 39735541 -109781496 - RSINE1 SINE B4 0 165 2 6 888 237 150 0 0 chr6 39736622 39736662 -109780375 + L1MA4 LINE L1 6084 6123 -177 6 888 261 75 0 0 chr6 39736662 39736702 -109780335 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 6 888 252 114 0 83 chr6 39736769 39736817 -109780220 + B1_Mur1 SINE Alu 101 144 -5 6 888 224 100 25 0 chr6 39736895 39736935 -109780102 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 6 888 268 235 60 20 chr6 39736957 39737057 -109779980 + L1MA4 LINE L1 6191 6294 -6 6 888 1322 62 33 27 chr6 39737269 39737452 -109779585 - B2_Mm2 SINE B2 -9 186 3 6 888 261 244 202 0 chr6 39737753 39737872 -109779165 - MER5A1 DNA MER1_type -23 143 1 6 888 1213 44 12 0 chr6 39738783 39738943 -109778094 + (TTTTC)n Simple_repeat Simple_repeat 3 164 0 6 888 1330 86 17 0 chr6 39738944 39739118 -109777919 - B2_Mm2 SINE B2 -17 178 2 6 888 814 202 46 2 chr6 39739430 39739643 -109777394 + MLT2B4 LTR ERVL 20 239 -281 6 888 241 182 18 18 chr6 39739646 39739702 -109777335 + G-rich Low_complexity Low_complexity 4 59 0 6 888 279 200 18 0 chr6 39740023 39740078 -109776959 - L1MC4a LINE L1 -1087 6795 6740 6 888 243 0 0 0 chr6 39740681 39740708 -109776329 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 888 881 105 158 18 chr6 39740708 39740873 -109776164 - B2_Mm2 SINE B2 -1 194 7 6 888 330 315 70 26 chr6 39741044 39741158 -109775879 - B4A SINE B4 -173 119 1 6 888 256 214 86 17 chr6 39741374 39741457 -109775580 - BC1_Mm scRNA scRNA -58 94 1 6 888 2208 275 72 51 chr6 39741457 39742282 -109774755 - L1M4c LINE L1 -5526 858 17 6 888 2270 165 134 4 chr6 39742478 39742964 -109774073 + RMER4B LTR ERVK 33 581 -4 6 888 1308 234 68 41 chr6 39742999 39743365 -109773672 - RLTR18 LTR ERVK -60 556 181 6 888 691 199 12 40 chr6 39743392 39743565 -109773472 - RLTR9A LTR ERVK 0 368 201 6 888 2109 164 17 99 chr6 39743565 39744039 -109772998 - MERVL-int LTR ERVL -5045 440 6 6 888 2176 58 6 63 chr6 39744047 39744381 -109772656 - ORR1A2 LTR MaLR -8 319 5 6 888 1236 76 5 89 chr6 39744646 39744849 -109772188 + B2_Mm1a SINE B2 2 187 -6 6 888 669 183 84 0 chr6 39744961 39745092 -109771945 - B1_Mur3 SINE Alu 0 149 8 6 888 280 269 109 58 chr6 39745737 39745875 -109771162 + MER5A DNA MER1_type 6 150 -39 6 888 286 227 67 67 chr6 39745935 39746039 -109770998 - PB1D10 SINE Alu 0 117 14 6 888 323 209 30 0 chr6 39746110 39746177 -109770860 + ID4_ SINE ID 2 70 -13 6 888 977 165 23 0 chr6 39747219 39747395 -109769642 - B3 SINE B2 -35 181 2 6 888 415 236 105 35 chr6 39747625 39747739 -109769298 - B1_Mus2 SINE Alu -7 140 19 6 888 459 0 0 0 chr6 39747784 39747835 -109769202 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 888 322 153 73 2 chr6 39748019 39748086 -109768951 - B1_Mus1 SINE Alu -37 83 12 6 888 6477 99 32 17 chr6 39748207 39749164 -109767873 - Lx2B LINE L1 -6 6994 6023 6 888 2019 101 12 12 chr6 39749168 39749489 -109767548 - ORR1A4 LTR MaLR -8 321 1 6 888 2479 71 94 0 chr6 39749491 39749842 -109767195 - Lx2B LINE L1 -975 6025 5642 6 888 1602 151 116 3 chr6 39750236 39750554 -109766483 - ORR1C2 LTR MaLR 0 384 31 6 888 704 182 178 22 chr6 39750725 39750905 -109766132 - B3 SINE B2 -7 209 2 6 888 307 164 13 0 chr6 39751479 39751548 -109765489 - PB1 SINE Alu -3 124 42 6 888 206 277 31 43 chr6 39753160 39753283 -109763754 + MIR SINE MIR 34 155 -107 6 888 255 337 36 0 chr6 39754435 39754518 -109762519 + L2b LINE L2 3290 3375 0 6 888 28 0 0 0 chr6 39754811 39754839 -109762198 + AT_rich Low_complexity Low_complexity 1 28 0 6 888 297 301 0 12 chr6 39756069 39756153 -109760884 + LFSINE_Vert SINE SINE 1 83 -376 6 888 705 251 28 6 chr6 39756439 39756615 -109760422 + B3A SINE B2 1 180 -18 6 888 956 97 28 0 chr6 39756662 39756807 -109760230 + B1_Mur4 SINE Alu 2 150 0 6 888 248 91 0 22 chr6 39756810 39756855 -109760182 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 888 1686 31 0 0 chr6 39757633 39757825 -109759212 - B2_Mm1a SINE B2 0 193 2 6 888 351 0 0 0 chr6 39757944 39757983 -109759054 + (CCA)n Simple_repeat Simple_repeat 3 41 0 6 888 185 162 0 51 chr6 39758233 39758272 -109758765 + MIRc SINE MIR 43 79 -189 6 888 450 0 0 0 chr6 39758824 39758874 -109758163 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 888 230 255 20 0 chr6 39759002 39759053 -109757984 - RSINE1 SINE B4 -110 55 4 6 888 500 205 31 39 chr6 39759107 39759234 -109757803 + B1_Mur1 SINE Alu 21 146 -3 6 888 266 284 27 0 chr6 39759329 39759403 -109757634 + RSINE1 SINE B4 2 77 -88 6 888 974 114 6 51 chr6 39759712 39759888 -109757149 - URR1A DNA MER1_type 0 226 59 6 888 416 206 121 20 chr6 39759914 39760013 -109757024 - B3A SINE B2 -89 109 1 6 888 850 141 9 5 chr6 39761539 39761689 -109755348 - B1_Mus2 SINE Alu 0 149 3 6 888 1371 227 142 0 chr6 39762836 39763201 -109753836 - MTD LTR MaLR 0 419 3 6 888 207 0 0 0 chr6 39763275 39763298 -109753739 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 888 929 239 109 30 chr6 39763551 39763853 -109753184 - MER2 DNA MER2_type -14 331 6 6 888 25 0 0 0 chr6 39763893 39763918 -109753119 + AT_rich Low_complexity Low_complexity 1 25 0 6 888 687 283 3 11 chr6 39763945 39764146 -109752891 - B3A SINE B2 -4 212 9 6 888 733 239 0 0 chr6 39764209 39764351 -109752686 - B1_Mur1 SINE Alu -6 143 2 6 888 1998 134 11 39 chr6 39764383 39764713 -109752324 - ORR1B1 LTR MaLR 0 394 71 6 888 3580 23 0 0 chr6 39764713 39765109 -109751928 + MTA_Mm LTR MaLR 1 396 0 6 888 8172 66 18 6 chr6 39765109 39766195 -109750842 + MTA_Mm-int LTR MaLR 1 1098 0 6 888 3396 46 0 0 chr6 39766195 39766590 -109750447 + MTA_Mm LTR MaLR 1 395 -1 6 888 1998 134 11 39 chr6 39766590 39766621 -109750416 - ORR1B1 LTR MaLR -324 70 43 6 888 311 347 76 43 chr6 39766748 39767025 -109750012 - B4 SINE B4 0 292 7 6 888 256 298 69 17 chr6 39767117 39767233 -109749804 - MLT1A LTR MaLR -210 164 43 6 888 618 333 63 43 chr6 39767376 39767790 -109749247 - MLT1D LTR MaLR -17 488 67 6 888 679 259 103 10 chr6 39767790 39768090 -109748947 - L1M2 LINE L1 -1934 4209 3882 6 888 329 265 0 0 chr6 39768090 39768158 -109748879 - PB1D10 SINE Alu -40 77 10 6 888 1206 298 44 40 chr6 39768167 39768305 -109748732 + L1ME1 LINE L1 5701 5835 -344 6 888 2166 152 61 79 chr6 39768305 39768513 -109748524 + MTC LTR MaLR 1 209 -212 6 888 1327 91 43 0 chr6 39768513 39768699 -109748338 + B2_Mm2 SINE B2 2 195 0 6 888 2166 152 61 79 chr6 39768699 39768919 -109748118 + MTC LTR MaLR 210 421 0 6 888 1206 298 44 40 chr6 39768919 39769255 -109747782 + L1ME1 LINE L1 5836 6177 -2 6 888 400 364 41 16 chr6 39769520 39769763 -109747274 - L1ME3B LINE L1 -322 5918 5670 6 888 1096 237 22 19 chr6 39770144 39770415 -109746622 - B4A SINE B4 -6 286 15 6 888 434 315 83 49 chr6 39770766 39771090 -109745947 - L1ME3B LINE L1 -2328 3818 3484 6 888 2110 169 29 29 chr6 39771295 39771674 -109745363 + RLTR14 LTR ERV1 3 381 -1 6 888 1734 86 17 0 chr6 39771832 39772065 -109744972 - L1_Mus1 LINE L1 0 6567 6331 6 888 752 229 77 24 chr6 39772412 39772683 -109744354 + RMER20B LTR ERVK 132 475 -152 6 888 297 151 0 0 chr6 39772777 39772830 -109744207 + CT-rich Low_complexity Low_complexity 2 54 0 6 888 353 268 0 0 chr6 39772849 39772920 -109744117 - ID4 SINE ID -11 72 2 6 888 849 291 9 9 chr6 39773019 39773251 -109743786 + MTE2a LTR MaLR 1 232 -147 6 888 376 335 36 43 chr6 39773244 39773547 -109743490 - ORR1E LTR MaLR -20 350 52 6 888 1964 47 0 0 chr6 39773633 39773868 -109743169 - L1Md_T LINE L1 0 6582 6348 6 888 3464 39 2 92 chr6 39774424 39774903 -109742134 - RLTR10C LTR ERVK 0 436 1 6 888 393 318 19 31 chr6 39775493 39775666 -109741371 + MIR SINE MIR 38 210 -58 6 888 1465 255 146 14 chr6 39775694 39776262 -109740775 - Lx8 LINE L1 -2 7471 6829 6 888 562 290 36 21 chr6 39776482 39776691 -109740346 + MIR SINE MIR 17 236 -32 6 888 1256 233 59 0 chr6 39776805 39777075 -109739962 + B4A SINE B4 2 287 -5 6 888 3142 78 127 25 chr6 39777180 39777651 -109739386 - MURVY-LTR LTR ERV1 0 519 1 6 888 605 88 299 7 chr6 39778954 39779091 -109737946 - MT2B2 LTR ERVL -69 515 339 6 888 218 299 19 14 chr6 39779117 39779211 -109737826 - MIRc SINE MIR -96 166 71 6 888 788 261 0 89 chr6 39779361 39779597 -109737440 - B3 SINE B2 -1 215 1 6 888 1192 177 98 161 chr6 39779610 39780007 -109737030 - ORR1D1 LTR MaLR 0 374 3 6 888 315 179 18 0 chr6 39780552 39780608 -109736429 - ID4 SINE ID 0 83 27 6 888 280 297 50 75 chr6 39780731 39780851 -109736186 + MLT1K LTR MaLR 69 185 -410 6 888 224 320 13 0 chr6 39781014 39781089 -109735948 + CT-rich Low_complexity Low_complexity 5 80 0 6 888 616 228 74 0 chr6 39781091 39781240 -109735797 - Lx8 LINE L1 -304 7169 7010 6 888 309 252 120 10 chr6 39781280 39781380 -109735657 - PB1D10 SINE Alu -1 116 6 6 888 215 125 13 40 chr6 39781433 39781508 -109735529 + (TA)n Simple_repeat Simple_repeat 2 74 0 6 888 771 230 0 52 chr6 39781569 39781743 -109735294 - B3A SINE B2 0 198 34 6 888 347 0 23 0 chr6 39781804 39781847 -109735190 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 888 586 273 61 0 chr6 39781849 39782014 -109735023 - B3A SINE B2 -22 176 2 6 888 1112 101 0 6 chr6 39782134 39782303 -109734734 - L1Md_F2 LINE L1 -12 6570 6403 7 888 31 58 0 0 chr6 39782313 39782365 -109734672 + AT_rich Low_complexity Low_complexity 1 52 0 7 888 754 119 72 112 chr6 39782391 39782543 -109734494 + B1_Mur4 SINE Alu 3 148 -2 7 888 231 36 0 0 chr6 39783013 39783041 -109733996 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 888 270 252 19 57 chr6 39784037 39784142 -109732895 + MLT1N2 LTR MaLR 433 533 -29 7 888 263 279 12 12 chr6 39784316 39784396 -109732641 + ID2 SINE ID 3 82 -1 7 888 206 174 22 0 chr6 39784432 39784478 -109732559 + GA-rich Low_complexity Low_complexity 2 48 0 7 888 545 219 16 16 chr6 39784499 39784624 -109732413 + ORR1D2 LTR MaLR 1 125 -245 7 888 509 220 65 122 chr6 39784688 39784967 -109732070 + RLTR15 LTR ERVK 1 263 -96 7 888 618 192 30 8 chr6 39785045 39785176 -109731861 + ORR1D2 LTR MaLR 237 370 0 7 888 3358 46 2 0 chr6 39785202 39785597 -109731440 + MTA_Mm LTR MaLR 1 396 0 7 888 824 172 27 27 chr6 39785658 39785807 -109731230 - B1_Mur3 SINE Alu 0 149 1 7 888 1142 75 0 0 chr6 39786031 39786178 -109730859 - B1_Mm SINE Alu 0 147 1 7 888 820 252 112 16 chr6 39786482 39786785 -109730252 - MTEa LTR MaLR -47 332 1 7 888 1638 338 50 35 chr6 39786786 39787612 -109729425 - MTEa-int LTR MaLR -17 1563 726 7 888 231 36 0 0 chr6 39787631 39787659 -109729378 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 7 888 399 258 0 31 chr6 39787680 39787776 -109729261 - B1_Mus2 SINE Alu 0 147 55 7 888 410 209 86 0 chr6 39787826 39787931 -109729106 + RLTR28 LTR ERVL 1 114 -410 7 888 2088 129 18 6 chr6 39787937 39788265 -109728772 - RMER19B LTR ERVK -570 332 1 7 888 3071 144 100 4 chr6 39788265 39788838 -109728199 - Lx7 LINE L1 -503 7193 6566 7 888 4917 206 41 72 chr6 39789326 39790515 -109726522 - Lx7 LINE L1 -1135 6561 5329 7 888 778 180 0 0 chr6 39790515 39790643 -109726394 - B1_Mur3 SINE Alu -13 136 9 7 888 326 316 41 41 chr6 39790530 39790675 -109726362 - B4A SINE B4 -83 209 65 7 888 4917 206 41 72 chr6 39790675 39791142 -109725895 - Lx7 LINE L1 -1135 5328 4843 7 888 183 42 0 0 chr6 39791142 39791166 -109725871 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 888 3572 217 94 84 chr6 39791166 39791439 -109725598 - Lx7 LINE L1 -1010 4873 4552 7 888 318 164 119 0 chr6 39791439 39791506 -109725531 + RLTR24 LTR ERV1 1 75 -454 7 888 3572 217 94 84 chr6 39791506 39791720 -109725317 - Lx7 LINE L1 -1010 4551 4297 7 888 1285 105 17 0 chr6 39791720 39791901 -109725136 - B2_Mm1t SINE B2 -9 184 1 7 888 3163 219 103 80 chr6 39791901 39792487 -109724550 - Lx7 LINE L1 -1587 4296 3593 7 888 1663 26 0 20 chr6 39792487 39792683 -109724354 - B2_Mm1a SINE B2 0 193 2 7 888 3163 146 57 17 chr6 39792683 39793014 -109724023 - Lx7 LINE L1 -2288 3592 3249 7 888 8653 152 76 55 chr6 39794483 39796395 -109720642 - Lx7 LINE L1 -2619 3261 1307 7 888 4240 146 21 3 chr6 39796395 39797063 -109719974 - Lx2B LINE L1 -2 6998 6319 7 888 8653 197 50 34 chr6 39797063 39797639 -109719398 - Lx7 LINE L1 -6422 1306 708 7 888 328 269 37 86 chr6 39797668 39797756 -109719281 - MTEa LTR MaLR -199 180 93 7 888 2973 127 46 27 chr6 39797756 39798273 -109718764 + RLTR11A2 LTR ERVK 1 527 0 7 888 328 269 37 86 chr6 39798273 39798347 -109718690 - MTEa LTR MaLR -287 92 27 7 888 3867 187 65 39 chr6 39798386 39799402 -109717635 - RMER1B Other Other -3 1063 47 7 888 576 134 235 15 chr6 39799403 39799539 -109717498 + RLTR20A1 LTR ERVK 1 166 -385 7 888 454 230 0 124 chr6 39799529 39799698 -109717339 + RLTR20A2 LTR ERVK 431 578 0 7 888 1055 241 27 0 chr6 39799700 39799920 -109717117 - RMER1B Other Other -834 232 7 7 888 339 25 0 0 chr6 39800030 39800070 -109716967 + (CAG)n Simple_repeat Simple_repeat 3 42 0 7 888 321 137 0 0 chr6 39800320 39800371 -109716666 - MurSatRep1 Unknown Unknown -1131 1006 956 7 888 880 100 0 0 chr6 39800370 39800490 -109716547 - MurSatRep1 Unknown Unknown -1404 733 614 7 888 408 169 0 0 chr6 39800660 39800731 -109716306 - B1_Mur3 SINE Alu -11 138 68 7 888 429 264 27 9 chr6 39800793 39800904 -109716133 + L1MCa LINE L1 1 113 -6395 7 888 1120 323 71 28 chr6 39800936 39801468 -109715569 + L1MCa LINE L1 172 726 -5782 7 888 604 254 39 63 chr6 39801467 39801602 -109715435 + L1MCa LINE L1 1698 1828 -4680 7 888 938 219 29 5 chr6 39801602 39801808 -109715229 - B3 SINE B2 -4 212 2 7 888 604 254 39 63 chr6 39801808 39801878 -109715159 + L1MCa LINE L1 1829 1898 -4610 7 888 1134 264 39 36 chr6 39801893 39802403 -109714634 + L1MCa LINE L1 1971 2475 -3846 7 888 450 222 0 69 chr6 39802404 39802520 -109714517 + L1MCa LINE L1 2782 2889 -3432 7 888 268 304 112 0 chr6 39802531 39802656 -109714381 + ID_B1 SINE B4 86 224 0 7 888 496 259 121 0 chr6 39802737 39802969 -109714068 + L1MCa LINE L1 2901 3160 -3161 7 888 1237 217 111 15 chr6 39802979 39803320 -109713717 - MTE2a LTR MaLR -5 374 1 7 888 593 251 143 32 chr6 39803327 39803409 -109713628 + L1MCa LINE L1 3168 3249 -3072 7 888 279 0 0 0 chr6 39803409 39803440 -109713597 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 888 593 251 143 32 chr6 39803440 39803562 -109713475 + L1MCa LINE L1 3250 3395 -2926 7 888 279 0 0 0 chr6 39803562 39803593 -109713444 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 888 593 251 143 32 chr6 39803593 39803667 -109713370 + L1MCa LINE L1 3396 3477 -2844 7 888 1033 254 26 29 chr6 39803696 39803968 -109713069 + B4A SINE B4 2 272 -20 7 888 437 224 17 17 chr6 39804039 39804216 -109712821 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 888 206 143 20 0 chr6 39804250 39804299 -109712738 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 888 1589 253 112 7 chr6 39804355 39804900 -109712137 + L1MCa LINE L1 3506 4107 -2214 7 888 810 148 89 0 chr6 39805062 39805197 -109711840 + B1_Mus1 SINE Alu 1 147 -1 7 888 216 0 0 0 chr6 39805219 39805243 -109711794 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 888 1018 244 79 56 chr6 39805259 39805308 -109711729 - RLTR12B LTR ERVK -43 485 436 7 888 1546 101 0 30 chr6 39805308 39805544 -109711493 - L1Md_F2 LINE L1 0 6582 6354 7 888 1018 244 79 56 chr6 39805544 39805923 -109711114 - RLTR12B LTR ERVK -93 435 47 7 888 1191 111 0 3 chr6 39805937 39806281 -109710756 + (CCAA)n Simple_repeat Simple_repeat 1 343 0 7 888 284 352 35 69 chr6 39806356 39806472 -109710565 + PB1D7 SINE Alu 1 112 -8 7 888 821 258 117 106 chr6 39806690 39806838 -109710199 - MTE2b LTR MaLR -1 378 200 7 888 180 0 0 0 chr6 39806838 39806858 -109710179 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 7 888 821 258 117 106 chr6 39806858 39807078 -109709959 - MTE2b LTR MaLR -180 199 6 7 888 219 69 0 0 chr6 39807135 39807164 -109709873 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 888 242 256 55 11 chr6 39808214 39808305 -109708732 + MTEa LTR MaLR 280 374 -5 7 888 942 171 23 0 chr6 39808419 39808595 -109708442 + URR1A DNA MER1_type 1 180 -46 7 888 2003 199 67 18 chr6 39808595 39809091 -109707946 - RLTR11A2 LTR ERVK 0 527 8 7 888 268 176 0 0 chr6 39809097 39809148 -109707889 + URR1A DNA MER1_type 173 223 -3 7 888 274 293 10 29 chr6 39809152 39809254 -109707783 - L1M5 LINE L1 -279 5845 5746 7 888 362 317 72 12 chr6 39809963 39810129 -109706908 - MLT1A LTR MaLR -10 364 189 7 888 243 0 0 0 chr6 39810137 39810164 -109706873 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 888 509 0 0 16 chr6 39810164 39810226 -109706811 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 7 888 371 203 0 0 chr6 39810255 39810324 -109706713 - B1_Mus2 SINE Alu 0 147 79 7 888 717 269 36 10 chr6 39810394 39810589 -109706448 - B3 SINE B2 -11 205 6 7 888 35 0 0 0 chr6 39810717 39810752 -109706285 + AT_rich Low_complexity Low_complexity 1 35 0 7 888 1144 219 77 15 chr6 39810996 39811270 -109705767 - B4 SINE B4 0 292 2 7 888 526 240 16 32 chr6 39811454 39811579 -109705458 - RMER20B LTR ERVK -504 123 1 7 888 569 303 152 7 chr6 39811993 39812302 -109704735 + LTR33A_ LTR ERVL 5 358 -173 7 888 608 303 247 8 chr6 39812309 39812701 -109704336 + Zaphod DNA Tip100 16 501 -3530 7 888 816 308 108 122 chr6 39813286 39814364 -109702673 + Zaphod DNA Tip100 2478 3540 -491 7 888 294 233 33 0 chr6 39814395 39814455 -109702582 + B1F SINE Alu 67 128 -21 7 888 443 284 8 17 chr6 39814490 39814608 -109702429 + RSINE1 SINE B4 2 118 -47 7 888 3742 60 21 10 chr6 39814608 39815094 -109701943 - L1Md_F2 LINE L1 0 6582 6092 7 888 344 241 229 33 chr6 39815195 39815435 -109701602 + B4 SINE B4 5 291 -1 7 888 390 147 0 0 chr6 39815451 39815519 -109701518 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 888 323 302 24 56 chr6 39816017 39816143 -109700894 + B1F2 SINE Alu 11 132 -17 7 888 288 260 87 60 chr6 39816215 39816331 -109700706 + MLT1C LTR MaLR 246 459 -8 7 888 540 311 77 12 chr6 39816377 39816731 -109700306 - L1M5 LINE L1 -612 5628 5249 7 888 180 329 36 12 chr6 39817012 39817095 -109699942 - L2 LINE L2 -513 2906 2822 7 888 454 245 10 0 chr6 39817411 39817509 -109699528 + B1_Mur3 SINE Alu 17 115 -34 7 888 324 0 0 0 chr6 39817513 39817549 -109699488 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 888 1563 196 95 18 chr6 39817691 39818080 -109698957 - MTD LTR MaLR 0 419 1 7 888 273 335 65 37 chr6 39818493 39818738 -109698299 + L3 LINE CR1 4150 4401 -88 7 888 455 279 0 0 chr6 39818902 39819013 -109698024 + PB1D10 SINE Alu 1 111 -6 7 888 396 0 0 0 chr6 39819030 39819074 -109697963 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 888 1576 127 191 28 chr6 39819081 39819406 -109697631 + ORR1C1 LTR MaLR 1 378 0 7 888 429 20 0 0 chr6 39820920 39820970 -109696067 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 888 1030 137 6 0 chr6 39826147 39826315 -109690722 + URR1A DNA MER1_type 58 226 0 7 888 468 0 0 0 chr6 39826810 39826862 -109690175 + (T)n Simple_repeat Simple_repeat 1 52 0 7 888 455 216 178 31 chr6 39827297 39827426 -109689611 - B1_Mur2 SINE Alu 0 149 2 7 888 303 28 0 0 chr6 39828429 39828465 -109688572 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 888 596 214 76 8 chr6 39828482 39828614 -109688423 + B1F SINE Alu 4 144 -5 7 888 229 167 33 16 chr6 39828715 39828735 -109688302 + polypyrimidine Low_complexity Low_complexity 42 63 0 7 888 1229 54 0 0 chr6 39828735 39828883 -109688154 - B1_Mus1 SINE Alu 0 148 1 7 888 229 167 33 16 chr6 39828883 39828923 -109688114 + polypyrimidine Low_complexity Low_complexity 2 41 0 7 888 1958 197 14 28 chr6 39829019 39829442 -109687595 - RLTR17 LTR ERVK -73 619 203 7 888 1224 61 0 0 chr6 39829458 39829605 -109687432 + B1_Mus1 SINE Alu 2 148 0 7 888 982 147 22 79 chr6 39829632 39829650 -109687387 - RLTR17 LTR ERVK -476 216 197 7 888 185 31 0 86 chr6 39829650 39829685 -109687352 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 888 982 147 22 79 chr6 39829685 39829895 -109687142 - RLTR17 LTR ERVK -496 196 1 7 888 370 86 0 58 chr6 39829959 39830045 -109686992 + (CA)n Simple_repeat Simple_repeat 1 81 0 7 888 403 274 37 50 chr6 39830117 39830278 -109686759 - Lx8 LINE L1 -243 7230 7072 7 888 471 35 0 0 chr6 39830481 39830538 -109686499 + (GAAA)n Simple_repeat Simple_repeat 1 57 0 7 888 595 293 4 144 chr6 39831100 39831187 -109685850 - B4 SINE B4 -11 281 215 7 888 529 285 18 37 chr6 39831187 39831351 -109685686 - RSINE1 SINE B4 -4 161 1 7 888 601 259 11 71 chr6 39831351 39831534 -109685503 - B4A SINE B4 -72 220 49 7 888 621 38 0 0 chr6 39831534 39831614 -109685423 + (TG)n Simple_repeat Simple_repeat 2 81 0 7 888 393 103 0 0 chr6 39831614 39831682 -109685355 + (TC)n Simple_repeat Simple_repeat 2 69 0 7 888 476 168 10 0 chr6 39832391 39832492 -109684545 + CT-rich Low_complexity Low_complexity 3 104 0 7 888 851 230 60 35 chr6 39832692 39832976 -109684061 - B4A SINE B4 0 292 2 8 888 274 227 117 58 chr6 39833336 39833439 -109683598 + L1MB3 LINE L1 6059 6167 -16 8 888 216 220 0 33 chr6 39833611 39833661 -109683376 + GA-rich Low_complexity Low_complexity 2 51 0 8 888 240 35 0 0 chr6 39833661 39833690 -109683347 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 8 888 272 244 176 34 chr6 39833733 39833852 -109683185 - ORR1E LTR MaLR -221 138 3 8 888 235 236 236 0 chr6 39833972 39834061 -109682976 - MIRm SINE MIR -15 261 152 8 888 254 250 14 29 chr6 39834144 39834214 -109682823 - ID4 SINE ID -13 70 2 8 888 289 205 44 3 chr6 39835426 39835510 -109681527 + L1M5 LINE L1 5723 5811 -351 8 888 664 312 78 51 chr6 39835527 39835822 -109681215 + L1MA4 LINE L1 5601 5904 -396 8 888 22 0 0 0 chr6 39835824 39835846 -109681191 + AT_rich Low_complexity Low_complexity 1 22 0 8 888 2273 232 43 4 chr6 39835847 39836314 -109680723 - Lx6 LINE L1 -31 7429 6945 8 888 247 157 0 38 chr6 39836586 39836639 -109680398 + ZP3AR Satellite Satellite 35 85 -127 8 888 372 241 12 0 chr6 39836596 39836679 -109680358 + ID SINE ID 1 84 -140 8 888 342 45 0 0 chr6 39836853 39836897 -109680140 + (CAA)n Simple_repeat Simple_repeat 2 45 0 8 888 182 37 37 0 chr6 39837464 39837491 -109679546 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 8 888 1140 69 7 0 chr6 39837496 39837641 -109679396 - B1_Mm SINE Alu -1 146 1 8 888 3764 62 0 2 chr6 39837648 39838117 -109678920 - L1_Mus1 LINE L1 0 6567 6100 8 888 237 240 0 0 chr6 39839145 39839220 -109677817 + CT-rich Low_complexity Low_complexity 1 75 0 8 888 3346 50 0 0 chr6 39839568 39839964 -109677073 + MTA_Mm LTR MaLR 1 396 0 8 888 25 0 0 0 chr6 39840806 39840831 -109676206 + AT_rich Low_complexity Low_complexity 1 25 0 8 888 795 192 103 41 chr6 39840837 39840877 -109676160 - B3 SINE B2 -5 211 177 8 888 1121 232 108 57 chr6 39840877 39841229 -109675808 + ORR1D2 LTR MaLR 1 370 0 8 888 795 192 103 41 chr6 39841229 39841383 -109675654 - B3 SINE B2 -40 176 5 8 888 727 280 60 60 chr6 39841757 39842091 -109674946 - ORR1E LTR MaLR -7 352 19 8 888 217 244 0 0 chr6 39842952 39842993 -109674044 + polypyrimidine Low_complexity Low_complexity 2 42 0 8 888 830 71 121 0 chr6 39844037 39844177 -109672860 + Lx3_Mus LINE L1 6848 7004 -5 8 888 412 281 50 11 chr6 39844276 39844456 -109672581 - L2a LINE L2 -16 3410 3224 8 888 327 315 8 16 chr6 39844896 39845025 -109672012 - L2a LINE L2 -549 2870 2743 8 888 1655 31 0 30 chr6 39845277 39845478 -109671559 + B2_Mm2 SINE B2 1 195 0 8 889 234 139 0 0 chr6 39846041 39846084 -109670953 + Lx8 LINE L1 7429 7471 -2 8 889 486 307 18 81 chr6 39846095 39846318 -109670719 + B4A SINE B4 81 289 -3 8 889 381 22 0 0 chr6 39846428 39846474 -109670563 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 889 449 76 15 0 chr6 39847456 39847522 -109669515 + (TG)n Simple_repeat Simple_repeat 1 67 0 8 889 834 236 109 25 chr6 39847522 39847761 -109669276 - B4A SINE B4 -22 270 12 8 889 237 317 57 19 chr6 39848033 39848139 -109668898 + ORR1E LTR MaLR 2 111 -248 8 889 227 356 19 0 chr6 39848687 39848791 -109668246 + MLT1J1 LTR MaLR 6 111 -333 8 889 230 323 10 39 chr6 39848807 39848910 -109668127 + MLT1J1 LTR MaLR 178 277 -167 8 889 548 184 106 0 chr6 39849887 39850028 -109667009 - L1M2 LINE L1 -1511 4632 4477 8 889 619 208 116 20 chr6 39850028 39850175 -109666862 - B3 SINE B2 0 216 56 8 889 336 236 11 11 chr6 39850171 39850261 -109666776 - B4A SINE B4 -201 91 2 8 889 1190 42 169 6 chr6 39850656 39850822 -109666215 + B2_Mm2 SINE B2 2 194 -1 8 889 1500 192 105 3 chr6 39851466 39851800 -109665237 - ORR1D1 LTR MaLR 0 374 7 8 889 21 0 0 0 chr6 39851941 39851962 -109665075 + AT_rich Low_complexity Low_complexity 1 21 0 8 889 211 267 0 32 chr6 39853105 39853167 -109663870 + (CATA)n Simple_repeat Simple_repeat 2 61 0 8 889 300 111 0 0 chr6 39853394 39853439 -109663598 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 889 195 320 115 29 chr6 39854230 39854439 -109662598 - MIRc SINE MIR -2 266 40 8 889 1523 192 101 11 chr6 39854489 39854588 -109662449 + MTD LTR MaLR 1 103 -316 8 889 351 0 0 0 chr6 39854588 39854627 -109662410 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 889 1523 192 101 11 chr6 39854627 39854895 -109662142 + MTD LTR MaLR 104 400 -19 8 889 361 283 11 0 chr6 39854943 39855035 -109662002 - RSINE1 SINE B4 -70 95 3 8 889 302 303 24 39 chr6 39855415 39855542 -109661495 + L2c LINE L2 3262 3386 -1 8 889 450 221 0 102 chr6 39855590 39855720 -109661317 - B1F SINE Alu -27 122 5 8 889 417 254 19 9 chr6 39856617 39856732 -109660305 - MLT1B LTR MaLR -79 388 195 8 889 1264 55 44 6 chr6 39856727 39856908 -109660129 - B2_Mm2 SINE B2 0 195 8 8 889 217 232 0 35 chr6 39857943 39858001 -109659036 + (TATG)n Simple_repeat Simple_repeat 1 56 0 8 889 963 269 24 31 chr6 39858003 39858295 -109658742 - B4A SINE B4 -2 290 1 8 889 1509 323 124 42 chr6 39859070 39859307 -109657730 - L2 LINE L2 -537 2882 2636 8 889 330 250 25 0 chr6 39859307 39859387 -109657650 - ID4_ SINE ID 0 83 2 8 889 1509 323 124 42 chr6 39859387 39860458 -109656579 - L2 LINE L2 -784 2635 1467 8 889 287 291 62 21 chr6 39860661 39860854 -109656183 - L2 LINE L2 -2308 1111 911 8 889 814 220 6 6 chr6 39861306 39861466 -109655571 + B3A SINE B2 1 160 -38 8 889 799 227 0 0 chr6 39861708 39861849 -109655188 + B1F2 SINE Alu 1 141 -8 8 889 1416 326 59 13 chr6 39861865 39862543 -109654494 + Lx9 LINE L1 6715 7423 -221 8 889 190 211 0 55 chr6 39863017 39863072 -109653965 + L2b LINE L2 3318 3369 -6 8 889 300 158 0 0 chr6 39863785 39863842 -109653195 + (ATG)n Simple_repeat Simple_repeat 2 58 0 8 889 1170 74 0 0 chr6 39864322 39864470 -109652567 + B1_Mus1 SINE Alu 1 148 0 8 889 1330 64 31 21 chr6 39864475 39864666 -109652371 + B2_Mm2 SINE B2 2 194 -1 8 889 221 0 0 33 chr6 39865272 39865302 -109651735 + (CAT)n Simple_repeat Simple_repeat 3 31 0 8 889 239 170 21 0 chr6 39865302 39865349 -109651688 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 889 706 291 30 75 chr6 39865351 39865656 -109651381 - B4A SINE B4 0 292 2 8 889 187 290 72 0 chr6 39868088 39868157 -109648880 + MIR SINE MIR 92 165 -97 8 889 526 305 0 7 chr6 39868591 39868743 -109648294 - Lx8 LINE L1 -235 7238 7088 8 889 387 60 0 0 chr6 39868746 39868796 -109648241 + (TCC)n Simple_repeat Simple_repeat 3 52 0 8 889 258 242 45 0 chr6 39868909 39868975 -109648062 + B1F2 SINE Alu 2 70 -79 8 889 216 0 0 0 chr6 39869653 39869677 -109647360 + (T)n Simple_repeat Simple_repeat 1 24 0 8 889 604 203 47 0 chr6 39869677 39869805 -109647232 - RLTR16 LTR ERVK -251 254 121 8 889 39819 58 6 7 chr6 39869805 39876497 -109640540 - L1Md_T LINE L1 -11 6571 99 8 889 1186 246 71 18 chr6 39877268 39877607 -109639430 + ORR1E LTR MaLR 1 357 -2 8 889 443 215 66 0 chr6 39877708 39877829 -109639208 + MamRep4096 DNA hAT? 99 227 -199 8 889 402 115 0 0 chr6 39878346 39878407 -109638630 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 889 533 224 86 0 chr6 39878421 39878537 -109638500 - RSINE1 SINE B4 -22 143 18 8 889 254 224 164 27 chr6 39878900 39879010 -109638027 - HAL1 LINE L1 -856 1651 1527 8 889 462 271 35 0 chr6 39879245 39879389 -109637648 + Lx7 LINE L1 7160 7308 -388 8 889 261 0 0 0 chr6 39879424 39879453 -109637584 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 889 419 18 36 0 chr6 39882573 39882628 -109634409 + (TTTTC)n Simple_repeat Simple_repeat 3 59 0 8 889 3354 45 29 0 chr6 39882633 39883054 -109633983 - L1_Mus1 LINE L1 -1 6566 6134 8 889 356 308 142 47 chr6 39883282 39883599 -109633438 + MLT1C LTR MaLR 44 390 -77 8 889 856 192 69 29 chr6 39883641 39883845 -109633192 - B3 SINE B2 0 216 5 8 889 191 277 137 11 chr6 39885001 39885096 -109631941 + L2c LINE L2 3241 3347 -40 8 889 1725 129 10 7 chr6 39885143 39885432 -109631605 - ORR1C1 LTR MaLR -9 369 80 8 889 1507 250 72 16 chr6 39885933 39886380 -109630657 - L1ME3 LINE L1 -31 6131 5660 8 889 449 317 183 22 chr6 39886870 39887099 -109629938 - MTE2b LTR MaLR -87 292 27 8 889 339 264 16 32 chr6 39887576 39887701 -109629336 - L1M5 LINE L1 -347 5817 5695 8 889 505 274 8 16 chr6 39887701 39887827 -109629210 - PB1 SINE Alu 0 127 3 8 889 232 301 11 88 chr6 39887757 39887848 -109629189 - B4A SINE B4 -135 157 74 8 889 6850 62 11 3 chr6 39887921 39888780 -109628257 + L1_Mus1 LINE L1 5703 6567 0 8 889 249 281 134 0 chr6 39888801 39888883 -109628154 - L1M5 LINE L1 -603 5576 5484 8 889 216 0 0 0 chr6 39889065 39889089 -109627948 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 8 889 748 182 0 7 chr6 39889172 39889310 -109627727 - B3 SINE B2 0 216 80 8 889 216 97 0 0 chr6 39890202 39890233 -109626804 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 8 889 3097 47 3 8 chr6 39890253 39890639 -109626398 - L1Md_F2 LINE L1 -1 6581 6198 8 889 257 270 13 13 chr6 39890660 39890735 -109626302 - B3A SINE B2 -123 75 1 8 889 413 178 37 12 chr6 39891399 39891651 -109625386 + (TG)n Simple_repeat Simple_repeat 1 258 0 8 889 27 0 0 0 chr6 39892609 39892636 -109624401 + AT_rich Low_complexity Low_complexity 1 27 0 8 889 342 0 0 0 chr6 39892732 39892770 -109624267 + (TTA)n Simple_repeat Simple_repeat 3 40 0 8 889 1632 305 61 40 chr6 39892825 39893649 -109623388 - L1MC3 LINE L1 -241 7544 6704 8 889 552 253 105 0 chr6 39893980 39894142 -109622895 - B3 SINE B2 -10 206 28 8 889 512 225 27 53 chr6 39894236 39894386 -109622651 - B1F SINE Alu -1 148 3 8 889 794 263 52 42 chr6 39895708 39895994 -109621043 - B4 SINE B4 0 292 4 9 889 300 201 3 24 chr6 39897418 39897511 -109619526 - MLT1D LTR MaLR -1 504 448 9 889 238 295 25 13 chr6 39897703 39897782 -109619255 - MLT1D LTR MaLR -420 85 6 9 889 317 301 107 20 chr6 39898013 39898162 -109618875 - L2a LINE L2 -1 3425 3264 9 889 398 239 172 0 chr6 39898600 39898734 -109618303 + MLT1C LTR MaLR 5 161 -306 9 889 675 25 0 0 chr6 39899023 39899104 -109617933 + (GA)n Simple_repeat Simple_repeat 1 81 0 9 889 263 266 51 0 chr6 39899236 39899315 -109617722 - L2a LINE L2 -1058 2361 2279 9 889 639 188 0 0 chr6 39899567 39899679 -109617358 + PB1D9 SINE Alu 8 119 -1 9 889 326 93 0 36 chr6 39899679 39899735 -109617302 + (GGGAGA)n Simple_repeat Simple_repeat 2 55 0 9 889 302 286 67 42 chr6 39900467 39900659 -109616378 - MIRb SINE MIR -50 218 17 9 889 880 293 33 30 chr6 39902533 39902927 -109614110 - L1ME4a LINE L1 -283 5841 5447 9 889 25 95 0 0 chr6 39903098 39903172 -109613865 + AT_rich Low_complexity Low_complexity 1 74 0 9 889 1001 91 28 0 chr6 39903245 39903388 -109613649 - B1_Mus1 SINE Alu -1 147 1 9 889 268 143 0 0 chr6 39903812 39903854 -109613183 - ID SINE ID -181 43 2 9 889 275 270 105 99 chr6 39903917 39904098 -109612939 - MER63A DNA AcHobo -26 184 3 9 889 389 326 0 7 chr6 39904407 39904552 -109612485 + MIR3 SINE MIR 65 208 0 9 889 592 159 0 31 chr6 39905712 39905842 -109611195 + (TATATG)n Simple_repeat Simple_repeat 5 130 0 9 889 931 238 64 35 chr6 39905842 39906125 -109610912 - B4 SINE B4 0 292 2 9 889 293 81 0 0 chr6 39907083 39907120 -109609917 - L1VL1 LINE L1 -6199 223 187 9 889 4418 57 59 20 chr6 39907120 39907710 -109609327 + L1Md_F2 LINE L1 5968 6580 -2 9 889 597 231 156 2 chr6 39908168 39908448 -109608589 + L1MB3 LINE L1 5573 5904 -396 9 889 377 248 171 0 chr6 39908451 39908568 -109608469 - B1F2 SINE Alu -7 142 6 9 889 511 256 140 19 chr6 39908629 39908836 -109608201 + L1MB3 LINE L1 5933 6164 -7 9 889 317 135 19 0 chr6 39909579 39909631 -109607406 - MTD LTR MaLR -14 405 353 9 889 345 183 197 17 chr6 39909707 39909824 -109607213 - MTD LTR MaLR -72 347 210 9 889 237 139 0 0 chr6 39909829 39909872 -109607165 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 9 889 734 189 0 0 chr6 39909905 39910027 -109607010 - B1_Mur2 SINE Alu -16 133 12 9 889 576 269 38 47 chr6 39910026 39910237 -109606800 - MTD LTR MaLR -208 211 3 9 889 2367 258 202 33 chr6 39910243 39910516 -109606521 - MTD-int LTR MaLR -4 1254 947 9 889 271 0 0 49 chr6 39910516 39910557 -109606480 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 889 2367 258 202 33 chr6 39910557 39911355 -109605682 - MTD-int LTR MaLR -312 946 2 9 889 722 232 102 10 chr6 39911355 39911560 -109605477 - MTD LTR MaLR 0 419 196 9 889 544 212 7 7 chr6 39911560 39911698 -109605339 + CT-rich Low_complexity Low_complexity 2 139 0 9 889 4801 211 51 15 chr6 39911741 39912763 -109604274 - Lx5 LINE L1 -53 6997 5939 9 889 665 139 0 0 chr6 39912738 39912839 -109604198 - L1_Mur3 LINE L1 -6 5874 5774 9 889 482 287 102 11 chr6 39912839 39913015 -109604022 - MTD LTR MaLR -207 212 21 9 889 207 0 0 0 chr6 39913584 39913607 -109603430 + (GA)n Simple_repeat Simple_repeat 1 23 0 9 889 306 0 0 0 chr6 39913607 39913640 -109603397 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 889 516 250 173 29 chr6 39913732 39913905 -109603132 + B3A SINE B2 1 198 0 9 889 313 271 62 0 chr6 39914244 39914363 -109602674 - ORR1E LTR MaLR -235 135 1 9 889 196 191 22 0 chr6 39914417 39914506 -109602531 + (TG)n Simple_repeat Simple_repeat 1 91 0 9 889 856 287 33 53 chr6 39915972 39916332 -109600705 - MTEa LTR MaLR -12 367 15 9 889 276 295 41 31 chr6 39916339 39916437 -109600600 - MLT1H LTR MaLR -387 162 64 9 889 694 286 30 25 chr6 39916818 39917055 -109599982 + B4A SINE B4 5 242 -50 9 889 210 37 0 0 chr6 39917164 39917191 -109599846 + (CAG)n Simple_repeat Simple_repeat 1 27 0 9 889 973 134 216 0 chr6 39917778 39917949 -109599088 + B3 SINE B2 3 210 -6 9 889 522 256 133 126 chr6 39918306 39918381 -109598656 + B4 SINE B4 24 76 -216 9 889 3877 125 53 10 chr6 39918381 39919005 -109598032 + Lx4A LINE L1 6408 7058 0 9 889 522 256 133 126 chr6 39919005 39919192 -109597845 + B4 SINE B4 77 288 -4 9 889 405 0 0 0 chr6 39919244 39919289 -109597748 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 889 606 293 223 6 chr6 39919592 39920107 -109596930 - L1MD3 LINE L1 -34 7961 7335 9 889 304 340 98 15 chr6 39920201 39920404 -109596633 + MIR SINE MIR 40 259 -3 9 889 375 336 13 58 chr6 39920410 39920565 -109596472 - MLT1J LTR MaLR -364 148 1 9 889 197 162 101 14 chr6 39921497 39921566 -109595471 + MIR3 SINE MIR 108 182 -26 9 889 396 59 0 0 chr6 39922160 39922211 -109594826 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 889 381 286 165 0 chr6 39922280 39922413 -109594624 - B4A SINE B4 -137 155 1 9 889 920 306 25 0 chr6 39922539 39922814 -109594223 - B4A SINE B4 -6 286 5 9 889 665 286 26 15 chr6 39923319 39923514 -109593523 - B3A SINE B2 0 198 2 9 889 2871 261 99 9 chr6 39923771 39924545 -109592492 + Lx8 LINE L1 6465 7308 -165 9 889 1182 210 95 12 chr6 39924545 39924882 -109592155 + MTD LTR MaLR 1 365 -54 9 889 298 157 0 0 chr6 39925037 39925088 -109591949 + MTD LTR MaLR 369 419 0 9 889 371 236 137 14 chr6 39925089 39925235 -109591802 + Lx8 LINE L1 7305 7468 -5 9 889 410 65 16 0 chr6 39925822 39925884 -109591153 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 889 251 319 23 61 chr6 39925886 39926072 -109590965 + MLT2B5 LTR ERVL 29 327 -390 9 889 279 237 269 0 chr6 39926383 39926476 -109590561 + RSINE1 SINE B4 2 119 -46 9 889 744 12 0 0 chr6 39926562 39926647 -109590390 + (GA)n Simple_repeat Simple_repeat 2 86 0 9 889 1188 158 17 71 chr6 39928178 39928317 -109588720 - URR1B DNA MER1_type 0 225 83 9 889 2181 163 8 3 chr6 39928317 39928686 -109588351 + Lx5 LINE L1 6677 7047 -3 9 889 1188 158 17 71 chr6 39928686 39928784 -109588253 - URR1B DNA MER1_type -143 82 1 9 889 954 168 194 0 chr6 39929612 39929808 -109587229 - Lx5 LINE L1 -1 7049 6816 9 889 341 293 20 10 chr6 39931146 39931246 -109585791 + (TCCA)n Simple_repeat Simple_repeat 2 102 0 9 889 1696 246 54 0 chr6 39932593 39933037 -109584000 + L1_Mur3 LINE L1 3603 4070 -1810 9 889 312 342 75 15 chr6 39934252 39934451 -109582586 - LTR88c LTR Genie? -544 318 108 9 889 926 188 21 21 chr6 39935678 39935868 -109581169 - Lx7 LINE L1 0 7696 7507 9 889 816 256 13 57 chr6 39935919 39936147 -109580890 - ID_B1 SINE B4 0 224 7 9 889 1228 286 75 47 chr6 39938087 39938689 -109578348 - L1MC4a LINE L1 -1967 5915 5297 9 889 1127 229 157 6 chr6 39938897 39939248 -109577789 + MTD LTR MaLR 15 418 -1 9 889 219 157 0 0 chr6 39939672 39939723 -109577314 + (CAGAGA)n Simple_repeat Simple_repeat 6 56 0 9 889 449 281 90 25 chr6 39940791 39940992 -109576045 - MIR SINE MIR -15 247 34 9 889 264 325 98 34 chr6 39943132 39943368 -109573669 + L3 LINE CR1 3439 3689 -800 9 889 209 83 0 27 chr6 39943419 39943456 -109573581 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 9 889 393 70 21 26 chr6 39943580 39943656 -109573381 + MTD LTR MaLR 343 417 -2 9 889 612 0 0 0 chr6 39943703 39943771 -109573266 + (TC)n Simple_repeat Simple_repeat 1 68 0 9 889 242 250 289 8 chr6 39944080 39944201 -109572836 - MIRb SINE MIR 0 268 114 9 889 1003 72 57 7 chr6 39944446 39944586 -109572451 + B1_Mus2 SINE Alu 1 147 0 9 889 180 0 0 0 chr6 39944616 39944636 -109572401 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 9 889 304 281 90 0 chr6 39944710 39944799 -109572238 + MIRb SINE MIR 56 152 -116 9 889 252 86 0 0 chr6 39945767 39945802 -109571235 + (A)n Simple_repeat Simple_repeat 1 35 0 9 889 251 54 27 0 chr6 39945925 39945962 -109571075 + (TCC)n Simple_repeat Simple_repeat 3 40 0 9 889 1102 244 45 39 chr6 39946551 39946837 -109570200 + B4A SINE B4 2 289 -3 9 889 911 240 212 67 chr6 39947708 39948245 -109568792 - L1MB1 LINE L1 -69 6120 5506 9 889 715 220 0 54 chr6 39948246 39948395 -109568642 - B1_Mur2 SINE Alu -7 142 2 9 889 338 34 100 11 chr6 39948397 39948487 -109568550 + (TC)n Simple_repeat Simple_repeat 1 98 0 9 889 749 214 60 4 chr6 39948489 39948716 -109568321 - L1MB1 LINE L1 -783 5508 5277 9 889 284 278 11 0 chr6 39951918 39952008 -109565029 - MER5A DNA MER1_type -98 91 1 9 889 2917 180 85 3 chr6 39952081 39952656 -109564381 - Lx9 LINE L1 -1 7643 7022 9 889 830 179 6 0 chr6 39952658 39952826 -109564211 + CT-rich Low_complexity Low_complexity 1 169 0 9 889 468 91 39 0 chr6 39952835 39952912 -109564125 - L1Md_F2 LINE L1 -12 6570 6491 9 889 768 112 35 0 chr6 39952912 39953028 -109564009 - Lx9 LINE L1 -614 7030 6911 9 889 279 79 0 0 chr6 39953303 39953341 -109563696 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 889 2067 151 64 19 chr6 39953718 39954095 -109562942 + ORR1B1 LTR MaLR 1 394 0 9 889 308 262 0 70 chr6 39956772 39956858 -109560179 + ID4 SINE ID 2 81 -2 9 889 234 0 0 0 chr6 39958103 39958129 -109558908 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 889 192 113 36 36 chr6 39958638 39958693 -109558344 + GA-rich Low_complexity Low_complexity 2 56 0 9 889 528 16 0 0 chr6 39958743 39958804 -109558233 + (CA)n Simple_repeat Simple_repeat 1 61 0 9 889 215 105 70 0 chr6 39958999 39959056 -109557981 + GA-rich Low_complexity Low_complexity 2 62 0 9 889 549 256 18 24 chr6 39959286 39959450 -109557587 + RMER15 LTR ERVL 340 502 -73 9 889 222 288 41 0 chr6 39962348 39962421 -109554616 + MER5A DNA MER1_type 61 136 -53 9 889 240 339 71 60 chr6 39962745 39962927 -109554110 + MIRb SINE MIR 45 228 -40 9 889 240 306 102 0 chr6 39964104 39964202 -109552835 + MER3 DNA MER1_type 2 109 -100 9 889 475 248 0 0 chr6 39964367 39964472 -109552565 + MER3 DNA MER1_type 99 203 -6 9 889 864 229 27 42 chr6 39965428 39965688 -109551349 - MamRep1161 DNA TcMar -675 282 27 9 889 5288 110 14 3 chr6 39967002 39967731 -109549306 - RMER19A LTR ERVK 0 737 1 9 889 501 210 30 0 chr6 39968597 39968697 -109548340 + PB1D7 SINE Alu 7 109 -11 9 889 340 222 98 36 chr6 39968819 39968931 -109548106 + MLT1A1 LTR MaLR 286 404 -4 9 889 22 0 0 0 chr6 39969065 39969087 -109547950 + AT_rich Low_complexity Low_complexity 1 22 0 1 889 243 0 0 0 chr6 39969976 39970003 -109547034 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 889 24 32 0 0 chr6 39970496 39970527 -109546510 + AT_rich Low_complexity Low_complexity 1 31 0 1 889 443 284 40 123 chr6 39970538 39970816 -109546221 - L1ME4a LINE L1 -265 5859 5605 1 889 1062 224 9 9 chr6 39970816 39971032 -109546005 - B3 SINE B2 0 216 1 1 889 443 284 40 123 chr6 39971032 39971102 -109545935 - L1ME4a LINE L1 -520 5604 5541 1 889 232 158 0 123 chr6 39971827 39971892 -109545145 + B4 SINE B4 235 291 -1 1 889 758 28 0 35 chr6 39972018 39972131 -109544906 + (TCC)n Simple_repeat Simple_repeat 2 110 0 1 889 254 137 0 19 chr6 39972131 39972169 -109544868 + polypyrimidine Low_complexity Low_complexity 7 44 0 1 889 1311 74 0 0 chr6 39972169 39972345 -109544692 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 1 889 514 248 28 0 chr6 39973187 39973296 -109543741 + RSINE1 SINE B4 16 127 -38 1 889 21 71 0 0 chr6 39974591 39974633 -109542404 + AT_rich Low_complexity Low_complexity 1 42 0 1 889 307 260 165 62 chr6 39974633 39974875 -109542162 - Lx8 LINE L1 -35 7438 7172 1 889 562 253 28 85 chr6 39974901 39975078 -109541959 - B3A SINE B2 -31 167 1 1 889 239 263 110 10 chr6 39975278 39975378 -109541659 - MIR3 SINE MIR -9 199 90 1 889 561 42 0 0 chr6 39975925 39975997 -109541040 + (GGA)n Simple_repeat Simple_repeat 2 73 0 1 889 631 183 0 32 chr6 39976568 39976692 -109540345 + B3 SINE B2 5 124 -92 1 111 5017 109 10 6 chr6 39976713 39977425 -109539612 - RLTR19B LTR ERVK 0 715 1 1 890 180 0 0 0 chr6 39977491 39977511 -109539526 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 890 1247 290 33 6 chr6 39977582 39977946 -109539091 + MTEa LTR MaLR 6 379 0 1 890 312 305 63 48 chr6 39978119 39978326 -109538711 + L1M5 LINE L1 5533 5742 -382 1 890 280 345 47 55 chr6 39978514 39978827 -109538210 + B4A SINE B4 2 270 -22 1 890 243 103 0 0 chr6 39978851 39978890 -109538147 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 890 942 222 50 5 chr6 39978984 39979183 -109537854 - B3 SINE B2 -8 208 1 1 890 289 319 25 42 chr6 39980323 39980441 -109536596 - MamSINE1 SINE tRNA -166 124 9 1 890 495 0 0 0 chr6 39980552 39980607 -109536430 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 890 306 191 347 0 chr6 39980614 39980709 -109536328 - RSINE1 SINE B4 -36 129 2 1 890 2394 36 0 4 chr6 39981069 39981350 -109535687 + L1Md_F2 LINE L1 6299 6578 -4 1 890 203 250 19 0 chr6 39981468 39981520 -109535517 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 890 899 264 51 11 chr6 39981523 39981799 -109535238 - B4A SINE B4 -4 288 2 1 890 621 291 40 40 chr6 39981815 39981893 -109535144 - Charlie5 DNA MER1_type -178 2446 2364 1 890 261 57 0 0 chr6 39981893 39981928 -109535109 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 890 621 291 40 40 chr6 39981928 39982150 -109534887 - Charlie5 DNA MER1_type -261 2363 2146 1 890 320 305 44 38 chr6 39982150 39982310 -109534727 - Charlie5 DNA MER1_type -2437 187 27 1 890 378 0 0 0 chr6 39982393 39982435 -109534602 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 890 334 185 17 8 chr6 39982461 39982581 -109534456 + (TCTG)n Simple_repeat Simple_repeat 2 122 0 1 890 180 0 0 0 chr6 39985302 39985322 -109531715 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 890 449 276 39 8 chr6 39985488 39985616 -109531421 + RSINE1 SINE B4 3 134 -31 1 890 319 241 12 35 chr6 39985719 39985805 -109531232 - MLT1A1 LTR MaLR -296 112 29 1 890 222 37 0 0 chr6 39985967 39985994 -109531043 + (ATG)n Simple_repeat Simple_repeat 1 27 0 1 890 279 280 39 71 chr6 39986158 39986285 -109530752 - MER53 DNA hAT -5 188 66 1 890 907 210 38 28 chr6 39986342 39986553 -109530484 - B3 SINE B2 -3 213 1 1 890 236 298 62 21 chr6 39987319 39987415 -109529622 - MLT1A1 LTR MaLR -16 392 293 1 890 219 139 0 0 chr6 39987767 39987803 -109529234 + (TCCCC)n Simple_repeat Simple_repeat 1 36 0 1 890 237 213 92 62 chr6 39987872 39987937 -109529100 - ID4 SINE ID -13 70 4 1 890 26 0 0 0 chr6 39987942 39987968 -109529069 + AT_rich Low_complexity Low_complexity 1 26 0 1 890 317 159 16 0 chr6 39987997 39988060 -109528977 + (TAA)n Simple_repeat Simple_repeat 1 64 0 1 890 279 0 0 0 chr6 39988248 39988279 -109528758 + (T)n Simple_repeat Simple_repeat 1 31 0 1 890 460 293 48 2 chr6 39988279 39988433 -109528604 - MIR SINE MIR -107 161 4 1 890 278 230 0 121 chr6 39989763 39989862 -109527175 + BC1_Mm scRNA scRNA 2 88 -64 1 890 195 139 0 0 chr6 39991064 39991100 -109525937 + (TCC)n Simple_repeat Simple_repeat 2 37 0 1 890 837 172 8 0 chr6 39991101 39991235 -109525802 - B1_Mur1 SINE Alu -14 135 1 1 890 309 68 0 0 chr6 39991456 39991500 -109525537 + (TTTAA)n Simple_repeat Simple_repeat 2 45 0 1 890 947 241 21 0 chr6 39991500 39991691 -109525346 - B3 SINE B2 -17 199 5 1 890 382 316 169 36 chr6 39992628 39993072 -109523965 - L2 LINE L2 -337 3082 2580 1 890 277 319 122 5 chr6 39993187 39993376 -109523661 - L2 LINE L2 -1159 2260 2050 1 890 1059 238 203 19 chr6 39993698 39994325 -109522712 - L1M4b LINE L1 -4463 2545 1866 1 890 1600 182 23 88 chr6 39994326 39994724 -109522313 + ORR1D1 LTR MaLR 3 374 0 1 890 287 306 233 29 chr6 39994895 39995303 -109521734 - L1M4b LINE L1 -5628 1706 1216 1 890 222 37 0 0 chr6 39995804 39995831 -109521206 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 890 31 26 0 0 chr6 39996401 39996439 -109520598 + AT_rich Low_complexity Low_complexity 1 38 0 1 890 237 325 0 12 chr6 39996829 39996910 -109520127 - ID4 SINE ID 0 83 4 1 890 551 237 116 45 chr6 39996966 39997165 -109519872 - MTEb LTR MaLR 0 379 167 1 890 3311 31 3 0 chr6 39997167 39997555 -109519482 - L1Md_T LINE L1 0 6582 6194 1 890 5847 20 1 0 chr6 39997555 39998538 -109518499 + L1Md_A LINE L1 5221 6204 -378 1 890 487 236 93 31 chr6 39998538 39998700 -109518337 - MTEb LTR MaLR -203 176 5 1 890 214 191 0 0 chr6 39999943 39999985 -109517052 + A-rich Low_complexity Low_complexity 1 42 0 1 890 22 0 0 0 chr6 40000436 40000458 -109516579 + GC_rich Low_complexity Low_complexity 1 22 0 1 890 483 18 0 0 chr6 40000543 40000599 -109516438 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 890 387 0 0 0 chr6 40000599 40000641 -109516396 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 890 445 356 56 49 chr6 40001253 40001663 -109515374 - MER77 LTR ERVL -11 596 184 4 890 291 349 64 18 chr6 40002296 40002515 -109514522 - MIRb SINE MIR 0 268 40 5 890 628 258 63 54 chr6 40003823 40004028 -109513009 + B3 SINE B2 1 207 -9 6 890 303 306 41 8 chr6 40004249 40004371 -109512666 + MTEb LTR MaLR 6 131 -239 7 890 240 163 0 0 chr6 40004371 40004414 -109512623 + G-rich Low_complexity Low_complexity 3 45 0 8 890 410 293 14 54 chr6 40004444 40004592 -109512445 + MTEb LTR MaLR 236 377 -2 7 890 198 0 0 0 chr6 40004847 40004869 -109512168 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 9 890 367 301 39 18 chr6 40005296 40005465 -109511572 - MIRb SINE MIR -35 233 55 1 890 816 234 92 72 chr6 40006297 40006643 -109510394 + L1MA9 LINE L1 5560 5912 -400 1 890 300 278 81 34 chr6 40007011 40007160 -109509877 + L1MA9 LINE L1 5908 6063 -249 1 890 270 252 105 40 chr6 40007163 40007287 -109509750 + L1MA9 LINE L1 6174 6305 -7 1 890 929 237 59 0 chr6 40007963 40008216 -109508821 + Tigger5 DNA MER2_type 2139 2406 0 1 890 212 409 0 0 chr6 40009365 40009475 -109507562 + L3 LINE CR1 3992 4101 -388 1 890 1174 223 50 111 chr6 40009663 40010067 -109506970 - MTE2a LTR MaLR 0 379 1 1 890 243 0 0 0 chr6 40012043 40012070 -109504967 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 890 346 315 9 9 chr6 40013013 40013125 -109503912 + PB1D10 SINE Alu 1 112 -5 1 890 1103 106 5 7 chr6 40013859 40014046 -109502991 - B2_Mm2 SINE B2 -1 192 1 1 890 459 52 0 0 chr6 40014620 40014678 -109502359 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 890 782 172 0 8 chr6 40014678 40014807 -109502230 - B2_Mm2 SINE B2 -66 129 2 1 890 1124 174 44 15 chr6 40014941 40015145 -109501892 + B3 SINE B2 1 210 -6 2 890 500 219 114 0 chr6 40015640 40015763 -109501274 + B1F SINE Alu 5 141 -8 2 890 188 256 93 47 chr6 40016903 40016989 -109500048 - MIR3 SINE MIR -22 186 97 2 890 1169 156 0 0 chr6 40019021 40019207 -109497830 - B2_Mm2 SINE B2 -9 186 1 2 890 1037 250 35 32 chr6 40019882 40020167 -109496870 - ORR1E LTR MaLR -70 289 4 2 890 1159 241 67 19 chr6 40020211 40020524 -109496513 - Lx8 LINE L1 -554 6919 6592 2 890 995 294 214 15 chr6 40020518 40020919 -109496118 + Lx8 LINE L1 6937 7417 -56 2 890 999 68 0 0 chr6 40021471 40021603 -109495434 + (TC)n Simple_repeat Simple_repeat 1 132 0 2 890 297 0 0 0 chr6 40021603 40021635 -109495402 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 890 762 295 34 21 chr6 40021885 40022176 -109494861 - L3 LINE CR1 -2179 2310 2016 2 890 722 332 106 21 chr6 40022239 40022617 -109494420 + LTR84b LTR ERVL 8 417 -344 2 890 510 139 0 0 chr6 40024003 40024089 -109492948 + (TCCC)n Simple_repeat Simple_repeat 3 88 0 3 890 213 228 0 34 chr6 40024649 40024708 -109492329 + CT-rich Low_complexity Low_complexity 3 59 0 3 890 420 20 0 0 chr6 40026896 40026945 -109490092 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 890 479 287 45 0 chr6 40028762 40028919 -109488118 + L1MB3 LINE L1 5976 6139 -44 3 890 943 254 148 34 chr6 40029230 40029588 -109487449 + L1MB2 LINE L1 5773 6171 0 3 890 388 290 118 38 chr6 40030700 40030937 -109486100 - MIRb SINE MIR -5 263 1 3 890 333 0 0 0 chr6 40031177 40031214 -109485823 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 3 890 1093 261 80 31 chr6 40031715 40032067 -109484970 - ORR1D2 LTR MaLR -1 369 1 3 890 993 285 38 12 chr6 40033891 40034235 -109482802 + MTEb LTR MaLR 20 372 -7 3 890 8256 45 5 3 chr6 40034509 40035851 -109481186 - L1Md_F3 LINE L1 -2 6582 5239 3 890 248 337 65 38 chr6 40036228 40036413 -109480624 - Charlie15a DNA MER1_type -6 218 29 4 890 204 390 49 0 chr6 40036419 40036542 -109480495 - MIR3 SINE MIR -49 159 31 4 890 318 263 71 28 chr6 40036989 40037130 -109479907 - L1ME4a LINE L1 -9 6115 5969 4 890 277 311 60 15 chr6 40037429 40037563 -109479474 - L1ME4a LINE L1 -363 5761 5622 4 890 474 267 12 194 chr6 40037684 40037926 -109479111 - B4A SINE B4 0 292 95 4 890 1142 76 7 0 chr6 40039615 40039759 -109477278 + B1_Mus1 SINE Alu 2 146 -2 4 890 213 39 0 0 chr6 40039759 40039785 -109477252 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 4 890 1000 198 69 0 chr6 40040634 40040751 -109476286 - B3 SINE B2 0 216 96 4 890 333 0 0 0 chr6 40040751 40040788 -109476249 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 890 1000 198 69 0 chr6 40040788 40040872 -109476165 - B3 SINE B2 -121 95 2 4 890 953 290 38 60 chr6 40043778 40044145 -109472892 + ORR1E LTR MaLR 1 359 0 4 890 318 123 0 0 chr6 40044263 40044320 -109472717 + (CATA)n Simple_repeat Simple_repeat 1 57 0 4 890 209 143 0 160 chr6 40044328 40044378 -109472659 - L2c LINE L2 -13 3413 3338 5 890 877 36 0 0 chr6 40044762 40044874 -109472163 + B1_Mus2 SINE Alu 34 145 -2 5 890 207 0 0 0 chr6 40044874 40044897 -109472140 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 890 23 33 0 0 chr6 40045871 40045901 -109471136 + AT_rich Low_complexity Low_complexity 1 30 0 5 890 208 271 17 0 chr6 40046989 40047048 -109469989 - MIR SINE MIR -133 129 70 5 890 645 80 0 0 chr6 40048501 40048589 -109468448 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 890 339 332 234 14 chr6 40049707 40049798 -109467239 - B4A SINE B4 -10 282 163 5 890 2255 92 126 6 chr6 40049798 40050146 -109466891 - RLTR10 LTR ERVK 0 390 1 5 890 339 306 160 20 chr6 40050146 40050284 -109466753 - B4A SINE B4 -130 162 1 5 890 273 57 0 0 chr6 40050747 40050782 -109466255 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 890 378 0 0 0 chr6 40050782 40050823 -109466214 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 890 229 296 82 12 chr6 40051033 40051204 -109465833 - Lx7 LINE L1 -24 7672 7490 6 890 835 262 88 62 chr6 40051173 40051418 -109465619 - Lx7 LINE L1 -329 7367 7114 6 890 1558 177 274 56 chr6 40051418 40051897 -109465140 - RMER4B LTR ERVK -2 583 1 6 890 835 262 88 62 chr6 40051897 40051956 -109465081 - Lx7 LINE L1 -583 7113 7055 6 890 277 255 9 89 chr6 40052388 40052500 -109464537 - MLT1A LTR MaLR -212 162 60 6 890 504 311 83 0 chr6 40054643 40054836 -109462201 + MER58A DNA MER1_type 1 209 -15 6 890 234 194 129 0 chr6 40054959 40055021 -109462016 - B4A SINE B4 -221 71 2 6 890 764 259 95 30 chr6 40055036 40055234 -109461803 - L1MC1 LINE L1 -11 6322 6108 6 890 3778 64 4 8 chr6 40055234 40055709 -109461328 + MT2C_Mm LTR ERVL 3 475 0 6 890 764 259 95 30 chr6 40055709 40055741 -109461296 - L1MC1 LINE L1 -226 6107 6077 6 890 354 303 77 88 chr6 40055771 40055941 -109461096 + MLT1A1 LTR MaLR 1 171 -203 6 890 600 14 0 0 chr6 40056115 40056184 -109460853 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 890 180 0 0 0 chr6 40056184 40056204 -109460833 + (CCTA)n Simple_repeat Simple_repeat 2 21 0 6 890 198 0 0 0 chr6 40059465 40059487 -109457550 + (T)n Simple_repeat Simple_repeat 1 22 0 7 890 1196 308 112 10 chr6 40059719 40060343 -109456694 - L2 LINE L2 -685 2734 2047 7 890 450 0 0 0 chr6 40060459 40060509 -109456528 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 890 339 85 0 0 chr6 40060509 40060556 -109456481 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 890 315 0 0 0 chr6 40060772 40060807 -109456230 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 890 324 0 0 0 chr6 40060807 40060842 -109456195 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 890 393 244 12 0 chr6 40061191 40061277 -109455760 + B4A SINE B4 1 87 -205 7 890 369 275 0 12 chr6 40061400 40061481 -109455556 + B4 SINE B4 96 175 -117 7 890 396 40 0 0 chr6 40061581 40061631 -109455406 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 890 256 303 0 0 chr6 40061689 40061765 -109455272 + ID4_ SINE ID 8 83 0 7 890 872 155 149 67 chr6 40063597 40063805 -109453232 - URR1B DNA MER1_type 0 225 1 7 890 203 205 0 0 chr6 40063842 40063881 -109453156 + MIRc SINE MIR 86 124 -144 8 890 347 113 0 16 chr6 40066204 40066267 -109450770 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 890 410 408 0 0 chr6 40067068 40067247 -109449790 + (CCA)n Simple_repeat Simple_repeat 1 179 0 8 890 311 246 22 0 chr6 40067253 40067387 -109449650 + (CACCAT)n Simple_repeat Simple_repeat 4 140 0 8 890 223 384 0 0 chr6 40067398 40067484 -109449553 + (CCA)n Simple_repeat Simple_repeat 3 88 0 8 890 191 270 30 0 chr6 40067487 40067587 -109449450 + (CACCAT)n Simple_repeat Simple_repeat 4 106 0 8 890 304 266 22 140 chr6 40067639 40067818 -109449219 - MIRc SINE MIR -36 226 69 8 890 606 28 0 0 chr6 40067876 40067948 -109449089 + (TC)n Simple_repeat Simple_repeat 2 73 0 8 890 623 103 112 0 chr6 40068058 40068165 -109448872 - L1Md_F2 LINE L1 -50 6532 6414 8 890 919 174 111 0 chr6 40068222 40068412 -109448625 - B3 SINE B2 -4 212 2 8 890 324 0 0 0 chr6 40069339 40069375 -109447662 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 890 2233 177 5 12 chr6 40069375 40069786 -109447251 - MTD LTR MaLR -9 410 3 9 890 681 13 0 0 chr6 40069786 40069864 -109447173 + (TC)n Simple_repeat Simple_repeat 2 79 0 9 890 315 71 0 0 chr6 40069864 40069905 -109447132 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 890 351 288 42 8 chr6 40070543 40070662 -109446375 + MLT1D LTR MaLR 2 124 -381 9 890 697 297 47 28 chr6 40070664 40070917 -109446120 + MLT1D LTR MaLR 248 505 0 9 890 195 125 0 0 chr6 40071895 40071935 -109445102 + (G)n Simple_repeat Simple_repeat 1 40 0 9 890 324 186 0 178 chr6 40072173 40072291 -109444746 - B1F SINE Alu 0 149 53 9 890 231 36 0 0 chr6 40072500 40072528 -109444509 + (CAAG)n Simple_repeat Simple_repeat 2 29 0 9 890 629 235 24 0 chr6 40073434 40073600 -109443437 - MER5A DNA MER1_type -12 177 8 9 890 217 219 122 14 chr6 40074785 40074859 -109442178 - B4 SINE B4 -209 83 2 9 890 216 255 20 0 chr6 40075110 40075161 -109441876 + CT-rich Low_complexity Low_complexity 3 54 0 1 890 200 365 43 31 chr6 40076693 40076854 -109440183 - L2a LINE L2 -83 3343 3181 1 890 927 73 0 0 chr6 40076938 40077062 -109439975 + (TCCA)n Simple_repeat Simple_repeat 3 126 0 1 890 504 239 26 0 chr6 40077260 40077377 -109439660 + ID_B1 SINE B4 104 223 -1 1 890 348 111 0 0 chr6 40077405 40077459 -109439578 + (TCCC)n Simple_repeat Simple_repeat 2 55 0 1 890 22 35 0 0 chr6 40077548 40077577 -109439460 + AT_rich Low_complexity Low_complexity 1 29 0 1 890 339 25 0 0 chr6 40077672 40077712 -109439325 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 890 22 0 0 0 chr6 40078101 40078123 -109438914 + AT_rich Low_complexity Low_complexity 1 22 0 1 890 321 26 0 0 chr6 40078349 40078387 -109438650 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 1 890 252 0 0 0 chr6 40078639 40078667 -109438370 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 890 261 75 0 0 chr6 40078667 40078707 -109438330 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 890 466 306 115 41 chr6 40078740 40079160 -109437877 - MLT1H LTR MaLR -8 541 45 1 890 337 295 129 0 chr6 40080595 40080734 -109436303 + MIRc SINE MIR 25 181 -87 1 890 362 328 0 0 chr6 40081154 40081270 -109435767 - PB1D10 SINE Alu -1 116 1 1 890 351 0 0 0 chr6 40082508 40082547 -109434490 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 1 890 291 270 26 130 chr6 40082552 40082667 -109434370 - B1F1 SINE Alu -33 116 14 1 890 341 312 98 53 chr6 40083289 40083607 -109433430 + Charlie4a DNA MER1_type 170 501 -7 1 890 269 293 24 12 chr6 40085408 40085491 -109431546 - CR1_Mam LINE CR1 -1215 989 906 1 890 22 35 0 0 chr6 40085501 40085530 -109431507 + AT_rich Low_complexity Low_complexity 1 29 0 1 890 261 318 96 28 chr6 40086850 40087106 -109429931 + Charlie8 DNA MER1_type 59 332 -2096 1 890 239 250 13 40 chr6 40087162 40087237 -109429800 + Charlie8 DNA MER1_type 2353 2425 -3 1 890 333 0 0 0 chr6 40087706 40087743 -109429294 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 890 243 0 0 0 chr6 40089057 40089084 -109427953 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 890 294 307 89 0 chr6 40089325 40089426 -109427611 + PB1D10 SINE Alu 1 110 -7 1 890 649 278 119 76 chr6 40090981 40091401 -109425636 - MLT1C LTR MaLR -29 438 1 1 890 188 362 156 0 chr6 40091402 40091543 -109425494 + MIRc SINE MIR 90 252 -16 1 890 1146 198 19 9 chr6 40092077 40092291 -109424746 - B3 SINE B2 0 216 1 1 890 440 260 98 0 chr6 40093986 40094109 -109422928 + B3A SINE B2 1 135 -63 1 890 327 78 0 0 chr6 40094238 40094289 -109422748 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 1 890 291 121 0 0 chr6 40094820 40094878 -109422159 + (CTA)n Simple_repeat Simple_repeat 1 58 0 1 890 191 354 68 23 chr6 40095473 40095606 -109421431 + MIRb SINE MIR 15 153 -115 1 890 289 317 64 37 chr6 40096011 40096198 -109420839 - LTR16A LTR ERVL -101 350 159 1 890 965 269 17 20 chr6 40096578 40096870 -109420167 + B4A SINE B4 2 292 0 1 890 1422 244 20 49 chr6 40096883 40097331 -109419706 - L1MA5 LINE L1 -13 6287 5853 1 890 864 262 101 32 chr6 40099380 40099755 -109417282 + MTD LTR MaLR 5 405 -14 1 890 30 27 0 0 chr6 40099828 40099865 -109417172 + AT_rich Low_complexity Low_complexity 1 37 0 1 890 733 179 6 50 chr6 40100575 40100734 -109416303 - B3 SINE B2 0 216 65 1 890 423 38 0 0 chr6 40100740 40100793 -109416244 + (CCA)n Simple_repeat Simple_repeat 1 53 0 1 890 675 309 44 44 chr6 40100882 40101200 -109415837 - L1MD3 LINE L1 -125 7870 7553 1 890 370 299 105 59 chr6 40101244 40101397 -109415640 - RSINE1 SINE B4 -2 163 4 1 890 409 230 77 120 chr6 40101406 40101589 -109415448 - L1MD3 LINE L1 -461 7534 7360 1 890 341 22 0 21 chr6 40101802 40101849 -109415188 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1 890 756 251 46 0 chr6 40101913 40102088 -109414949 + B3A SINE B2 1 183 -15 1 890 1865 242 115 9 chr6 40102681 40103211 -109413826 - Lx9 LINE L1 0 7644 7059 1 890 21 0 0 0 chr6 40103666 40103687 -109413350 + AT_rich Low_complexity Low_complexity 1 21 0 1 890 216 0 0 0 chr6 40104218 40104242 -109412795 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 1 890 771 287 32 32 chr6 40104999 40105280 -109411757 - B4A SINE B4 -10 282 2 1 890 479 231 67 37 chr6 40106342 40106477 -109410560 + B4A SINE B4 2 140 -152 1 890 741 199 0 0 chr6 40106876 40107007 -109410030 + B1_Mur3 SINE Alu 3 133 -16 1 890 198 103 0 0 chr6 40107012 40107041 -109409996 + (GGA)n Simple_repeat Simple_repeat 2 30 0 1 890 1034 284 101 101 chr6 40107075 40107194 -109409843 + Lx8 LINE L1 6828 6952 -521 1 890 198 0 0 0 chr6 40107194 40107216 -109409821 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 890 1034 284 101 101 chr6 40107216 40107741 -109409296 + Lx8 LINE L1 6953 7472 -1 1 891 308 275 12 0 chr6 40108204 40108284 -109408753 - ID4 SINE ID 0 83 3 1 891 1119 171 89 43 chr6 40108335 40108592 -109408445 - RMER13A LTR ERVK -591 269 1 1 891 225 0 0 0 chr6 40111115 40111140 -109405897 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1 891 243 330 82 0 chr6 40112684 40112781 -109404256 + PB1D10 SINE Alu 1 105 -12 1 891 180 111 0 0 chr6 40112783 40112810 -109404227 + (TCTCCC)n Simple_repeat Simple_repeat 6 32 0 1 891 653 92 10 0 chr6 40114928 40115026 -109402011 + (GA)n Simple_repeat Simple_repeat 2 100 0 1 891 319 266 31 46 chr6 40115149 40115279 -109401758 - L1MB3 LINE L1 0 6183 6056 1 891 829 265 38 48 chr6 40115378 40115667 -109401370 - B4A SINE B4 -6 286 1 1 891 637 275 102 12 chr6 40115667 40115921 -109401116 - L1MB2 LINE L1 -109 6062 5786 1 891 301 253 0 37 chr6 40116014 40116096 -109400941 - L1MB2 LINE L1 -410 5770 5692 1 891 289 206 29 29 chr6 40117472 40117577 -109399460 + Lx9 LINE L1 7509 7613 -31 1 891 489 34 0 0 chr6 40117577 40117636 -109399401 + (TAA)n Simple_repeat Simple_repeat 3 61 0 1 891 1229 61 0 0 chr6 40117648 40117796 -109399241 - B1_Mus1 SINE Alu 0 148 1 1 891 23 33 0 0 chr6 40117797 40117827 -109399210 + AT_rich Low_complexity Low_complexity 1 30 0 1 891 270 0 0 0 chr6 40118372 40118402 -109398635 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 891 3348 49 2 0 chr6 40119265 40119671 -109397366 + L1_Mus1 LINE L1 6161 6567 0 1 891 498 17 0 0 chr6 40119945 40120004 -109397033 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 891 2953 72 16 0 chr6 40121049 40121269 -109395768 - L1_Mus2 LINE L1 0 6566 6341 1 891 306 0 0 0 chr6 40121269 40121303 -109395734 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 891 2953 72 16 0 chr6 40121303 40121469 -109395568 - L1_Mus2 LINE L1 -226 6340 6175 1 891 1095 176 42 5 chr6 40121474 40121691 -109395346 + URR1B DNA MER1_type 1 225 0 1 891 311 293 20 10 chr6 40122746 40122846 -109394191 + MamRep1161 DNA TcMar 61 161 -796 1 891 883 192 28 5 chr6 40124997 40125205 -109391832 - B3A SINE B2 -4 212 1 1 891 387 193 0 0 chr6 40125603 40125686 -109391351 + CT-rich Low_complexity Low_complexity 3 85 0 1 891 1066 84 7 7 chr6 40125987 40126131 -109390906 + B1_Mus1 SINE Alu 5 148 0 1 891 227 282 17 68 chr6 40126645 40126763 -109390274 - LTR37B LTR ERV1 -2 466 355 1 891 1199 285 50 28 chr6 40126993 40127357 -109389680 - MTEa LTR MaLR -7 372 1 1 891 838 246 75 0 chr6 40127571 40127770 -109389267 + B3 SINE B2 2 215 -1 1 891 762 309 13 17 chr6 40128760 40128997 -109388040 + B4A SINE B4 8 243 -49 1 891 408 20 0 0 chr6 40129070 40129119 -109387918 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 891 766 272 78 0 chr6 40130115 40130332 -109386705 + B4A SINE B4 15 248 -44 1 891 537 16 0 0 chr6 40130415 40130477 -109386560 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 891 21 0 0 0 chr6 40130852 40130873 -109386164 + AT_rich Low_complexity Low_complexity 1 21 0 1 891 457 338 39 19 chr6 40131296 40131450 -109385587 + RSINE1 SINE B4 9 165 0 1 891 396 0 0 0 chr6 40131471 40131515 -109385522 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 891 341 298 65 0 chr6 40132108 40132232 -109384805 + MER58A DNA MER1_type 74 205 -19 1 891 325 240 31 20 chr6 40133010 40133108 -109383929 - ORR1E LTR MaLR 0 379 269 1 891 298 340 150 37 chr6 40133744 40134071 -109382966 - MLT1A0 LTR MaLR -1 364 1 1 891 243 0 0 0 chr6 40134697 40134724 -109382313 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 891 298 259 67 11 chr6 40134766 40134856 -109382181 + MIRm SINE MIR 84 178 -98 1 891 365 350 30 24 chr6 40135770 40135934 -109381103 - B4 SINE B4 -5 287 123 1 891 442 97 43 0 chr6 40135951 40136044 -109380993 + (CAGA)n Simple_repeat Simple_repeat 2 98 0 1 891 320 288 122 6 chr6 40136334 40136498 -109380539 + L1MB3 LINE L1 5816 5998 -185 1 891 466 276 17 0 chr6 40136646 40136762 -109380275 + B1F1 SINE Alu 23 140 -9 1 891 189 307 103 6 chr6 40138341 40138462 -109378575 - MIR SINE MIR -96 166 38 1 891 306 0 0 0 chr6 40139218 40139252 -109377785 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1 891 358 273 136 53 chr6 40139268 40139628 -109377409 - L1ME4a LINE L1 0 6124 5735 1 891 930 162 194 6 chr6 40140886 40141066 -109375971 + B3 SINE B2 1 214 -2 1 891 462 101 0 0 chr6 40141278 40141347 -109375690 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 891 1288 177 197 188 chr6 40142452 40142933 -109374104 + MT2A LTR ERVL 1 462 -71 1 891 459 0 0 0 chr6 40142933 40142984 -109374053 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 891 1288 177 197 188 chr6 40142984 40143030 -109374007 + MT2A LTR ERVL 463 532 -1 1 891 399 317 87 0 chr6 40143468 40143629 -109373408 - MIR SINE MIR -87 175 1 1 891 378 0 0 0 chr6 40143665 40143707 -109373330 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 891 537 304 123 21 chr6 40144272 40144598 -109372439 + ORR1E LTR MaLR 1 359 0 2 891 211 259 0 0 chr6 40145760 40145818 -109371219 + L2 LINE L2 3018 3075 -344 2 891 475 273 155 17 chr6 40146105 40146381 -109370656 + L1MA4 LINE L1 5135 5419 -461 2 891 270 211 0 0 chr6 40146382 40146434 -109370603 + L1M2 LINE L1 5503 5554 -737 2 891 633 27 0 0 chr6 40146489 40146564 -109370473 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 891 326 295 71 5 chr6 40146593 40146753 -109370284 + L1MA4 LINE L1 5734 5917 -383 2 891 22 0 0 0 chr6 40146945 40146967 -109370070 + AT_rich Low_complexity Low_complexity 1 22 0 2 891 268 107 88 18 chr6 40147852 40147909 -109369128 - MIRc SINE MIR -17 251 191 2 891 441 0 0 0 chr6 40148283 40148332 -109368705 + (TTTTA)n Simple_repeat Simple_repeat 3 51 0 2 891 746 228 78 55 chr6 40149239 40149556 -109367481 - MER33 DNA MER1_type -7 317 2 2 891 244 183 23 58 chr6 40151131 40151218 -109365819 + A-rich Low_complexity Low_complexity 3 86 0 2 891 363 44 0 0 chr6 40151329 40151374 -109365663 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 891 222 250 126 52 chr6 40151411 40151546 -109365491 - L2a LINE L2 -7 3419 3275 2 891 208 308 32 32 chr6 40154362 40154456 -109362581 + MIRc SINE MIR 81 174 -94 2 891 198 191 119 3 chr6 40156996 40157055 -109359982 + MIRc SINE MIR 37 104 -164 2 891 857 10 0 10 chr6 40158870 40158973 -109358064 + (GAA)n Simple_repeat Simple_repeat 2 103 0 2 891 252 0 0 0 chr6 40158973 40159001 -109358036 + (CAG)n Simple_repeat Simple_repeat 1 28 0 2 891 8134 49 3 0 chr6 40159816 40160792 -109356245 + L1_Mus1 LINE L1 5589 6567 0 2 891 318 50 0 0 chr6 40160915 40160955 -109356082 + (TATG)n Simple_repeat Simple_repeat 4 43 0 2 891 1072 293 28 11 chr6 40161878 40162161 -109354876 + B4 SINE B4 3 290 -2 2 891 203 217 48 12 chr6 40162423 40162507 -109354530 + (TA)n Simple_repeat Simple_repeat 2 88 0 2 891 441 0 0 0 chr6 40163187 40163236 -109353801 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 891 454 331 7 0 chr6 40163244 40163389 -109353648 - RSINE1 SINE B4 -17 148 3 2 891 206 363 48 19 chr6 40163389 40163597 -109353440 + L2 LINE L2 2793 3006 -413 2 891 444 302 137 6 chr6 40163840 40164023 -109353014 - MLT1E1A LTR MaLR -41 639 433 2 891 626 283 19 12 chr6 40164128 40164289 -109352748 + RSINE1 SINE B4 3 164 -1 2 891 4603 76 42 1 chr6 40164306 40164978 -109352059 - RLTR13C2 LTR ERVK -109 699 1 2 891 28 61 0 0 chr6 40164984 40165033 -109352004 + AT_rich Low_complexity Low_complexity 1 49 0 2 891 4643 62 5 8 chr6 40165173 40165762 -109351275 + L1_Mus1 LINE L1 5981 6567 0 2 891 1653 279 115 61 chr6 40165817 40166810 -109350227 - L1MC3 LINE L1 -88 7697 6137 2 891 426 267 19 45 chr6 40169117 40169274 -109347763 + MIR SINE MIR 77 229 -33 2 891 501 233 178 49 chr6 40169345 40169530 -109347507 - B3 SINE B2 0 216 8 2 891 332 289 172 10 chr6 40169693 40169896 -109347141 - L2a LINE L2 0 3426 3191 2 891 1038 163 79 5 chr6 40170599 40170802 -109346235 + URR1B DNA MER1_type 2 219 -6 2 891 392 300 113 76 chr6 40170955 40171337 -109345700 - MER110A LTR ERV1 -4 464 69 2 891 291 114 0 0 chr6 40173095 40173139 -109343898 + (GGA)n Simple_repeat Simple_repeat 2 45 0 2 891 1860 168 64 0 chr6 40173254 40173599 -109343438 - MTC LTR MaLR -8 413 47 2 891 326 253 53 0 chr6 40174251 40174346 -109342691 + MIR SINE MIR 156 255 -7 2 891 399 251 54 6 chr6 40175060 40175228 -109341809 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 891 1247 59 1 6 chr6 40175242 40175416 -109341621 + B2_Mm2 SINE B2 2 190 -26 2 891 382 36 18 18 chr6 40175416 40175473 -109341564 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 891 807 177 97 20 chr6 40175473 40175494 -109341543 + B3 SINE B2 191 211 -5 2 891 538 113 43 0 chr6 40175550 40175665 -109341372 + (CA)n Simple_repeat Simple_repeat 2 121 0 2 891 316 273 90 10 chr6 40176115 40176215 -109340822 + MIRc SINE MIR 114 221 -47 2 891 243 254 92 38 chr6 40178734 40178865 -109338172 + MIRc SINE MIR 1 138 -130 2 891 220 120 0 39 chr6 40178935 40178987 -109338050 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 891 269 309 153 10 chr6 40179502 40179683 -109337354 - MIR3 SINE MIR -6 202 1 2 891 180 125 0 0 chr6 40180624 40180656 -109336381 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 2 891 996 279 18 18 chr6 40181065 40181349 -109335688 + B4A SINE B4 9 292 0 2 891 221 283 0 0 chr6 40181364 40181410 -109335627 + G-rich Low_complexity Low_complexity 1 46 0 2 891 206 235 86 22 chr6 40182094 40182186 -109334851 - MIRb SINE MIR -13 255 152 2 891 863 0 70 23 chr6 40182308 40182479 -109334558 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 891 357 94 71 0 chr6 40182479 40182564 -109334473 + GA-rich Low_complexity Low_complexity 1 91 0 2 891 381 22 0 0 chr6 40183301 40183347 -109333690 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 891 708 283 19 19 chr6 40183408 40183617 -109333420 + B3 SINE B2 5 213 -3 2 891 1147 75 7 0 chr6 40183621 40183768 -109333269 + B1_Mus1 SINE Alu 1 148 0 2 891 252 319 10 52 chr6 40185309 40185405 -109331632 + MER81 DNA AcHobo 22 113 -1 2 891 741 280 40 70 chr6 40185405 40185438 -109331599 + MTEb LTR MaLR 122 152 -227 2 891 764 79 359 14 chr6 40185438 40185580 -109331457 - B2_Mm1t SINE B2 -2 191 1 2 891 741 280 40 70 chr6 40185580 40185812 -109331225 + MTEb LTR MaLR 153 379 0 2 891 916 204 23 37 chr6 40186181 40186395 -109330642 - B3 SINE B2 -5 211 1 2 891 692 215 14 7 chr6 40186945 40187090 -109329947 + B3 SINE B2 42 187 -29 2 891 248 258 35 64 chr6 40187559 40187700 -109329337 + MER117 DNA MER1_type 8 144 -53 2 891 213 108 0 0 chr6 40188007 40188044 -109328993 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 891 187 291 0 35 chr6 40188840 40188897 -109328140 + L2c LINE L2 3295 3349 -38 2 891 1338 232 33 28 chr6 40189712 40190076 -109326961 - ORR1D2 LTR MaLR -4 366 1 2 891 205 324 0 26 chr6 40190459 40190573 -109326464 + (CATATA)n Simple_repeat Simple_repeat 4 114 0 2 891 507 220 53 13 chr6 40190643 40190795 -109326242 - Lx7 LINE L1 0 7696 7539 2 891 630 319 17 13 chr6 40191323 40191555 -109325482 + B4 SINE B4 1 233 -59 2 891 252 167 0 0 chr6 40191564 40191612 -109325425 + GA-rich Low_complexity Low_complexity 2 49 0 2 891 313 229 144 117 chr6 40191703 40191741 -109325296 - B2_Mm2 SINE B2 -2 193 160 2 891 491 45 15 0 chr6 40191741 40191807 -109325230 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 891 486 212 132 26 chr6 40191807 40191956 -109325081 - B3 SINE B2 -36 159 1 2 891 228 296 37 0 chr6 40191961 40192042 -109324995 - L1M5 LINE L1 -693 5431 5348 2 891 283 275 97 32 chr6 40192241 40192365 -109324672 + ID_B1 SINE B4 93 224 0 2 891 263 284 13 39 chr6 40192374 40192451 -109324586 + ID4_ SINE ID 3 77 -6 2 891 334 329 48 42 chr6 40192472 40192640 -109324397 + MIR SINE MIR 19 187 -75 2 891 4133 211 53 29 chr6 40192692 40193618 -109323419 + Lx5 LINE L1 6100 7047 -3 2 891 555 66 0 0 chr6 40193618 40193694 -109323343 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 2 891 700 236 161 86 chr6 40193756 40194197 -109322840 - Lx8 LINE L1 -3 7470 6997 2 891 419 87 14 0 chr6 40194703 40194772 -109322265 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 891 257 51 26 0 chr6 40195791 40195830 -109321207 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 891 519 17 0 0 chr6 40196538 40196598 -109320439 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 891 215 79 0 26 chr6 40196810 40196849 -109320188 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 891 405 164 0 0 chr6 40197865 40197938 -109319099 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 891 342 0 0 0 chr6 40198009 40198047 -109318990 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 891 263 172 30 30 chr6 40198225 40198291 -109318746 - Lx2 LINE L1 -15 6982 6917 2 891 237 258 174 43 chr6 40200875 40201013 -109316024 + MIR SINE MIR 84 243 -25 2 891 819 278 34 10 chr6 40203347 40203638 -109313399 - MER33 DNA MER1_type 0 324 27 2 891 22 0 0 0 chr6 40205060 40205082 -109311955 + AT_rich Low_complexity Low_complexity 1 22 0 2 891 207 0 0 0 chr6 40205671 40205694 -109311343 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 891 995 104 14 0 chr6 40205705 40205849 -109311188 + B1_Mus1 SINE Alu 1 146 -2 2 891 634 307 11 0 chr6 40207498 40207677 -109309360 - MER77 LTR ERVL -105 502 322 2 891 27 0 0 0 chr6 40207722 40207749 -109309288 + AT_rich Low_complexity Low_complexity 1 27 0 2 891 1208 239 41 6 chr6 40207749 40208069 -109308968 - MTEb LTR MaLR -12 367 37 2 891 1086 245 47 18 chr6 40208111 40208389 -109308648 - ORR1D2 LTR MaLR 0 370 85 2 891 3251 60 2 2 chr6 40208449 40208849 -109308188 - MTB LTR MaLR 0 400 1 2 891 558 148 37 0 chr6 40208989 40209097 -109307940 + ORR1D1 LTR MaLR 3 114 -260 2 891 473 212 26 26 chr6 40209163 40209279 -109307758 + PB1D9 SINE Alu 5 120 0 2 891 720 263 24 43 chr6 40209312 40209519 -109307518 - MER77 LTR ERVL -403 204 2 2 891 743 256 62 109 chr6 40210038 40210217 -109306820 + B3A SINE B2 1 172 -23 2 891 324 0 0 0 chr6 40210217 40210253 -109306784 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 891 327 49 0 0 chr6 40210253 40210293 -109306744 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 891 405 256 62 109 chr6 40210293 40210305 -109306732 + B2_Mm2 SINE B2 173 183 -12 2 891 243 213 81 8 chr6 40210694 40210710 -109306327 + ORR1B1-int LTR MaLR 623 647 -862 2 891 867 82 0 0 chr6 40210710 40210832 -109306205 + B1_Mm SINE Alu 1 122 -25 3 891 1485 179 89 31 chr6 40210939 40211297 -109305740 - ORR1C2 LTR MaLR -5 379 1 3 891 367 239 130 29 chr6 40211864 40212002 -109305035 + MIR SINE MIR 37 188 -74 3 891 862 241 14 23 chr6 40212025 40212242 -109304795 - B3 SINE B2 0 216 2 3 891 284 333 0 0 chr6 40212922 40213027 -109304010 - L2a LINE L2 -26 3400 3296 3 891 290 87 0 21 chr6 40213163 40213210 -109303827 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 3 891 374 282 8 31 chr6 40213900 40214028 -109303009 + RMER15 LTR ERVL 298 422 -153 3 891 180 0 0 0 chr6 40214159 40214179 -109302858 + (A)n Simple_repeat Simple_repeat 1 20 0 3 891 234 243 83 28 chr6 40214320 40214392 -109302645 - ID2 SINE ID -2 81 6 3 891 21 0 0 0 chr6 40214906 40214927 -109302110 + AT_rich Low_complexity Low_complexity 1 21 0 3 891 793 294 29 0 chr6 40215021 40215259 -109301778 + MLT1C LTR MaLR 181 425 -42 3 891 310 274 101 63 chr6 40215410 40215622 -109301415 - MIRc SINE MIR -26 242 22 3 891 1440 167 123 19 chr6 40216456 40216780 -109300257 - ORR1B2 LTR MaLR -8 359 2 3 891 346 165 45 72 chr6 40216962 40217073 -109299964 - Lx9 LINE L1 -1 7643 7536 3 891 374 0 22 0 chr6 40217083 40217129 -109299908 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 891 333 0 0 0 chr6 40217129 40217165 -109299872 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 891 298 200 0 0 chr6 40217171 40217226 -109299811 - Lx9 LINE L1 -186 7458 7404 3 891 1540 235 11 73 chr6 40217224 40217374 -109299663 + Lx9 LINE L1 7002 7132 -512 3 891 5413 36 0 2 chr6 40217374 40218006 -109299031 + L1Md_T LINE L1 5951 6581 -1 3 891 1540 235 11 73 chr6 40218006 40218296 -109298741 + Lx9 LINE L1 7133 7415 -229 3 891 251 253 11 102 chr6 40220365 40220453 -109296584 + ID4_ SINE ID 2 81 -2 3 891 192 286 58 23 chr6 40220774 40220860 -109296177 - MIRm SINE MIR -148 128 40 3 891 346 244 134 41 chr6 40220915 40221206 -109295831 + L1MC5 LINE L1 7608 7925 -36 3 891 318 50 0 0 chr6 40221602 40221642 -109295395 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 891 215 338 44 15 chr6 40222898 40223043 -109293994 + MIRc SINE MIR 1 152 -116 3 891 1199 55 7 0 chr6 40224046 40224192 -109292845 + B1_Mus2 SINE Alu 1 147 0 3 891 290 333 201 8 chr6 40224487 40224841 -109292196 + L3 LINE CR1 3477 3898 -591 3 891 468 301 15 0 chr6 40225309 40225322 -109291715 - B1F SINE Alu -1 148 136 3 891 354 45 0 0 chr6 40225322 40225366 -109291671 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 3 891 468 301 15 0 chr6 40225366 40225488 -109291549 - B1F SINE Alu -14 135 12 3 891 3652 161 176 71 chr6 40226041 40226857 -109290180 - RMER19B LTR ERVK 0 902 1 3 891 668 261 153 16 chr6 40227193 40227442 -109289595 + MLT2D LTR ERVL 1 283 -131 3 891 360 0 0 0 chr6 40227492 40227532 -109289505 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 891 348 43 0 0 chr6 40227532 40227577 -109289460 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 891 927 154 7 0 chr6 40229054 40229197 -109287840 + B1_Mus2 SINE Alu 1 144 -3 3 891 183 87 42 42 chr6 40229202 40229250 -109287787 + A-rich Low_complexity Low_complexity 5 52 0 3 891 269 323 94 31 chr6 40229569 40229697 -109287340 + Charlie4z DNA MER1_type 8 143 -24 3 891 811 285 59 57 chr6 40230220 40230592 -109286445 + MTEa LTR MaLR 7 379 0 3 891 249 33 0 0 chr6 40230617 40230647 -109286390 + (TAGG)n Simple_repeat Simple_repeat 1 30 0 3 891 1714 137 51 94 chr6 40231083 40231455 -109285582 + ORR1B1 LTR MaLR 39 394 0 3 891 26 30 0 0 chr6 40231931 40231964 -109285073 + AT_rich Low_complexity Low_complexity 1 33 0 3 891 429 70 0 0 chr6 40231989 40232046 -109284991 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 891 312 321 99 14 chr6 40232104 40232246 -109284791 + MLT1J2 LTR MaLR 276 429 -19 3 891 249 324 101 0 chr6 40232284 40232417 -109284620 - MIR SINE MIR -105 163 21 3 891 348 254 20 61 chr6 40232847 40232994 -109284043 + L3 LINE CR1 3602 3742 -747 3 891 344 184 168 37 chr6 40233610 40233717 -109283320 - RSINE1 SINE B4 -42 123 3 3 891 1086 293 71 73 chr6 40233890 40234072 -109282965 - MT2A LTR ERVL 0 533 329 3 891 516 32 0 0 chr6 40234072 40234134 -109282903 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 891 1086 293 71 73 chr6 40234134 40234485 -109282552 - MT2A LTR ERVL -205 328 1 3 891 922 202 159 39 chr6 40236542 40236799 -109280238 - B4A SINE B4 -4 288 1 3 891 1436 66 11 0 chr6 40236826 40237009 -109280028 + B2_Mm1t SINE B2 1 185 -8 3 891 1361 169 267 22 chr6 40237458 40237773 -109279264 - ORR1B1 LTR MaLR -2 392 1 3 891 880 220 95 0 chr6 40238026 40238226 -109278811 - ID_B1 SINE B4 -5 219 1 3 111 4237 121 7 76 chr6 40238904 40239710 -109277327 - RMER17A LTR ERVK 0 751 1 3 892 415 344 30 21 chr6 40239764 40239999 -109277038 - MER57D LTR ERV1 -15 396 160 3 892 447 19 0 0 chr6 40240032 40240084 -109276953 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 892 824 301 19 5 chr6 40240219 40240433 -109276604 - MTEa LTR MaLR -118 261 45 3 892 1116 188 132 40 chr6 40240433 40240737 -109276300 - IAPEY3_LTR LTR ERVK 0 332 1 3 892 242 26 132 0 chr6 40240737 40240775 -109276262 - MTEa LTR MaLR -329 50 8 3 892 240 214 0 0 chr6 40240812 40240854 -109276183 - MER57D LTR ERV1 -362 49 8 3 892 389 302 162 44 chr6 40240870 40241327 -109275710 + L2a LINE L2 2478 2988 -431 3 892 1526 169 62 78 chr6 40241608 40241992 -109275045 + ORR1C1 LTR MaLR 1 378 0 3 892 826 173 8 21 chr6 40242340 40242587 -109274450 + CT-rich Low_complexity Low_complexity 1 243 0 3 892 259 296 36 57 chr6 40242593 40242733 -109274304 + L2a LINE L2 3289 3425 -1 3 892 448 324 28 7 chr6 40243059 40243202 -109273835 - RSINE1 SINE B4 -17 148 3 3 892 222 219 0 0 chr6 40243419 40243460 -109273577 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 892 190 239 75 0 chr6 40243743 40243810 -109273227 + L2b LINE L2 3254 3325 -50 3 892 258 258 0 0 chr6 40243964 40244030 -109273007 + CT-rich Low_complexity Low_complexity 2 67 0 3 892 273 296 0 0 chr6 40244870 40244941 -109272096 + MLT1D LTR MaLR 15 85 -542 3 892 9811 21 0 0 chr6 40244982 40246771 -109270266 - L1Md_T LINE L1 0 6582 4794 3 892 493 308 41 18 chr6 40246914 40247132 -109269905 + MLT1D LTR MaLR 283 505 0 3 892 230 344 31 0 chr6 40247190 40247286 -109269751 - ORR1E LTR MaLR -5 354 256 3 892 518 317 123 81 chr6 40247311 40247619 -109269418 + MER21B LTR ERV1 144 450 -413 3 892 1357 165 4 9 chr6 40247619 40247845 -109269192 - URR1B DNA MER1_type 0 225 1 3 892 518 317 123 81 chr6 40247845 40248079 -109268958 + MER21B LTR ERV1 451 709 -154 3 892 306 0 0 0 chr6 40248372 40248406 -109268631 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 892 187 293 67 0 chr6 40249955 40250030 -109267007 - L2 LINE L2 -616 2803 2724 3 892 1038 171 98 0 chr6 40250144 40250337 -109266700 - B3 SINE B2 -4 212 1 3 892 282 132 161 62 chr6 40251088 40251169 -109265868 + ORR1D2 LTR MaLR 1 89 -281 3 892 1127 225 201 5 chr6 40251169 40251588 -109265449 - L1MC2 LINE L1 -20 6324 5824 3 892 347 197 46 33 chr6 40251677 40251829 -109265208 + (CATG)n Simple_repeat Simple_repeat 3 156 0 3 892 248 300 14 0 chr6 40251841 40251911 -109265126 - B3A SINE B2 -16 182 112 3 892 996 282 20 40 chr6 40251861 40252120 -109264917 - B4A SINE B4 -2 290 37 3 892 2466 149 28 40 chr6 40252120 40252546 -109264491 + MTC LTR MaLR 1 421 0 3 892 996 282 20 40 chr6 40252546 40252582 -109264455 - B4A SINE B4 -256 36 1 3 892 591 214 31 35 chr6 40254273 40254471 -109262566 - B3A SINE B2 -4 191 1 3 892 258 372 54 0 chr6 40254668 40254797 -109262240 - MIRc SINE MIR -124 144 9 3 892 423 0 0 0 chr6 40255020 40255067 -109261970 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 892 780 172 0 0 chr6 40255804 40256164 -109260873 + (TG)n Simple_repeat Simple_repeat 1 360 0 3 892 372 301 80 17 chr6 40256314 40256490 -109260547 + L1M4 LINE L1 3935 4121 -2025 3 892 362 284 142 0 chr6 40257290 40257565 -109259472 + L1M4 LINE L1 4209 4522 -1624 3 892 2563 35 109 0 chr6 40257590 40257902 -109259135 - ORR1A0 LTR MaLR 0 346 1 3 892 526 197 94 0 chr6 40257922 40258039 -109258998 - B1_Mur2 SINE Alu 0 149 22 3 892 292 268 209 6 chr6 40258117 40258231 -109258806 + L1M4 LINE L1 4622 4766 -1380 3 892 715 206 219 84 chr6 40258231 40258565 -109258472 - MTEb LTR MaLR 0 379 1 3 892 292 268 209 6 chr6 40258565 40258608 -109258429 + L1M4 LINE L1 4767 4811 -1335 3 892 251 180 21 53 chr6 40258622 40258716 -109258321 - Lx5 LINE L1 -940 6110 6020 3 892 3722 173 136 25 chr6 40258722 40259555 -109257482 + Lx5 LINE L1 6125 7050 0 3 892 559 315 95 18 chr6 40259621 40259786 -109257251 + L1M4 LINE L1 4889 5079 -1067 3 892 1106 34 7 13 chr6 40259786 40259936 -109257101 - L1Md_F2 LINE L1 0 6582 6434 3 892 559 303 185 30 chr6 40259936 40260406 -109256631 + L1M4 LINE L1 5080 5630 -544 3 892 294 29 0 0 chr6 40260479 40260514 -109256523 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 892 33 0 0 0 chr6 40260710 40260743 -109256294 + AT_rich Low_complexity Low_complexity 1 33 0 3 892 1084 228 37 0 chr6 40261023 40261264 -109255773 + B4A SINE B4 2 251 -41 3 892 288 287 112 79 chr6 40261899 40262077 -109254960 - B3A SINE B2 0 198 15 3 892 238 258 122 23 chr6 40262285 40262416 -109254621 - L1MEd LINE L1 -5973 146 3 3 892 390 310 33 49 chr6 40263645 40263828 -109253209 - MLT1L LTR MaLR -69 541 362 3 892 713 253 5 65 chr6 40263900 40264086 -109252951 - B3 SINE B2 0 216 42 3 892 12365 147 85 113 chr6 40264087 40265188 -109251849 - L1_Mur3 LINE L1 -1667 4210 2927 3 892 1838 138 6 89 chr6 40265188 40265547 -109251490 - ORR1A4 LTR MaLR 0 329 1 3 892 12365 147 85 113 chr6 40265547 40266077 -109250960 - L1_Mur3 LINE L1 -2951 2926 2399 3 892 2356 54 3 3 chr6 40266077 40266392 -109250645 - MTA_Mm LTR MaLR -81 315 1 3 892 12365 147 85 113 chr6 40266392 40266736 -109250301 - L1_Mur3 LINE L1 -2951 2398 2054 3 892 180 0 0 0 chr6 40266736 40266756 -109250281 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 892 12365 160 71 88 chr6 40266756 40267807 -109249230 - L1_Mur3 LINE L1 -3824 2053 888 3 892 623 184 53 33 chr6 40268088 40268240 -109248797 + RLTR42 LTR ERVK 85 239 0 3 892 631 259 46 0 chr6 40268721 40268895 -109248142 + RMER30 DNA MER1_type 17 198 -4 3 892 3425 102 132 31 chr6 40269351 40269895 -109247142 + MT2B LTR ERVL 1 599 -2 3 892 368 240 69 10 chr6 40270435 40270536 -109246501 - MLT1D LTR MaLR -18 487 381 3 892 310 247 160 30 chr6 40271699 40271899 -109245138 - MER34A1 LTR ERV1 -75 512 287 4 892 761 288 115 32 chr6 40272027 40272307 -109244730 + RMER5 LTR ERV1 32 351 -183 4 892 3301 29 37 3 chr6 40272307 40272690 -109244347 + MTA_Mm LTR MaLR 1 396 0 4 892 7946 64 18 70 chr6 40272690 40273848 -109243189 + MTA_Mm-int LTR MaLR 1 1098 0 4 892 3071 53 48 0 chr6 40273848 40274226 -109242811 + MTA_Mm LTR MaLR 1 396 0 4 892 761 288 115 32 chr6 40274226 40274378 -109242659 + RMER5 LTR ERV1 352 500 -34 4 892 373 236 62 100 chr6 40274372 40274532 -109242505 - RMER15 LTR ERVL -17 558 405 4 892 221 304 0 0 chr6 40276197 40276253 -109240784 - MIRb SINE MIR -149 119 64 4 892 266 247 53 21 chr6 40277415 40277510 -109239527 + MER34 LTR ERV1 393 490 -52 4 892 261 0 0 0 chr6 40277571 40277600 -109239437 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 892 570 274 117 45 chr6 40277634 40277898 -109239139 - MLT1A0 LTR MaLR -40 325 43 4 892 274 273 125 0 chr6 40278087 40278175 -109238862 + L2c LINE L2 3289 3387 0 4 892 405 0 0 0 chr6 40278355 40278400 -109238637 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 892 248 350 121 7 chr6 40278644 40278785 -109238252 - L2a LINE L2 -2 3424 3268 4 892 24 0 0 0 chr6 40278916 40278940 -109238097 + AT_rich Low_complexity Low_complexity 1 24 0 4 892 1525 269 87 31 chr6 40280195 40280993 -109236044 - L1M3 LINE L1 -1152 4988 4147 4 892 357 282 24 71 chr6 40281015 40281037 -109236000 - B4A SINE B4 -86 206 87 4 892 508 235 0 19 chr6 40281037 40281141 -109235896 - PB1D10 SINE Alu -14 103 2 4 892 1420 219 95 15 chr6 40281496 40281834 -109235203 + ORR1D2 LTR MaLR 6 370 0 4 892 188 279 103 0 chr6 40281847 40281915 -109235122 + L2 LINE L2 2419 2493 -926 4 892 646 107 5 41 chr6 40282317 40282447 -109234590 - B1_Mur4 SINE Alu 0 150 26 4 892 1092 242 68 0 chr6 40282608 40282860 -109234177 + B4A SINE B4 1 269 -23 4 892 286 332 154 14 chr6 40284406 40284614 -109232423 + MIRb SINE MIR 18 254 -14 4 892 603 228 165 11 chr6 40284812 40284994 -109232043 + B3 SINE B2 1 210 -6 4 892 1049 193 22 98 chr6 40285936 40286247 -109230790 - ORR1D1 LTR MaLR -6 378 1 4 892 271 316 111 53 chr6 40286748 40286979 -109230058 + MIRb SINE MIR 27 268 0 4 892 429 210 12 12 chr6 40288356 40288438 -109228599 + RSINE1 SINE B4 83 164 -1 4 892 23 0 0 0 chr6 40288444 40288467 -109228570 + AT_rich Low_complexity Low_complexity 1 23 0 4 892 207 0 0 0 chr6 40288485 40288508 -109228529 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 892 1312 69 11 11 chr6 40289438 40289614 -109227423 - B2_Mm2 SINE B2 -19 176 1 4 892 196 253 95 0 chr6 40292122 40292185 -109224852 - L2b LINE L2 0 3426 3312 4 892 505 312 147 57 chr6 40292319 40292652 -109224385 - ORR1D2 LTR MaLR 0 370 8 4 892 180 125 0 0 chr6 40292821 40292853 -109224184 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 4 892 7820 190 58 10 chr6 40292854 40295286 -109221751 - Lx6 LINE L1 -2 7458 4892 4 892 295 253 11 0 chr6 40295273 40295368 -109221669 - Lx6 LINE L1 -7435 293 198 4 892 457 296 82 12 chr6 40295564 40295735 -109221302 + MER2 DNA MER2_type 15 197 -148 4 892 407 265 52 29 chr6 40296870 40297006 -109220031 - MLT1D LTR MaLR -113 392 254 4 892 31 44 0 0 chr6 40298303 40298348 -109218689 + AT_rich Low_complexity Low_complexity 1 45 0 4 892 491 184 82 0 chr6 40298369 40298467 -109218570 + B1F SINE Alu 38 143 -6 4 892 233 278 0 0 chr6 40298480 40298552 -109218485 - L1MA5 LINE L1 -33 6267 6196 4 892 998 167 174 29 chr6 40298999 40299281 -109217756 - ORR1B2 LTR MaLR -20 364 1 4 892 6734 167 55 63 chr6 40299281 40300802 -109216235 - ORR1B2-int LTR MaLR 0 1509 1 4 892 2110 149 28 3 chr6 40300804 40301160 -109215877 - ORR1B2 LTR MaLR -2 365 1 4 892 395 277 213 37 chr6 40301368 40301612 -109215425 - B4A SINE B4 -2 290 4 4 892 426 94 0 0 chr6 40303570 40303634 -109213403 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 892 188 190 23 23 chr6 40303672 40303715 -109213322 + MIRc SINE MIR 102 144 -124 4 892 457 282 77 59 chr6 40304227 40304513 -109212524 - B4A SINE B4 -1 291 1 4 892 911 136 49 43 chr6 40305512 40305697 -109211340 + B2_Mm2 SINE B2 1 186 -9 4 892 651 87 0 0 chr6 40305832 40305936 -109211101 + (GA)n Simple_repeat Simple_repeat 1 104 0 4 892 22 56 0 0 chr6 40307465 40307501 -109209536 + AT_rich Low_complexity Low_complexity 1 36 0 4 892 861 223 38 59 chr6 40307696 40307882 -109209155 - B3 SINE B2 -34 182 1 4 892 369 176 0 34 chr6 40307931 40308019 -109209018 - Lx9 LINE L1 0 7644 7560 4 892 562 241 166 52 chr6 40308047 40308354 -109208683 - Lx8 LINE L1 -2 7471 7130 4 892 187 193 102 34 chr6 40308503 40308562 -109208475 - L2b LINE L2 -15 3360 3298 4 892 267 280 17 8 chr6 40308703 40308822 -109208215 - L1M5 LINE L1 -2718 3428 3309 4 892 364 291 104 25 chr6 40309106 40309384 -109207653 - L1M5 LINE L1 -3158 2988 2689 4 892 6390 186 137 15 chr6 40309400 40311102 -109205935 + L1_Mur3 LINE L1 2867 4775 -1105 4 892 3717 77 55 0 chr6 40311102 40311611 -109205426 + Lx3_Mus LINE L1 6473 7009 0 4 892 361 326 5 116 chr6 40311626 40311841 -109205196 - L1M5 LINE L1 -3472 2674 2484 4 892 2079 88 19 19 chr6 40312386 40312709 -109204328 - Lx LINE L1 -8 6646 6324 4 892 236 256 109 17 chr6 40312785 40312904 -109204133 - Charlie7a DNA MER1_type -92 180 51 4 892 451 306 87 98 chr6 40313111 40313376 -109203661 - MER21B LTR ERV1 -583 280 19 4 892 260 360 126 16 chr6 40313782 40313909 -109203128 - MIRb SINE MIR -122 146 6 4 892 245 297 218 0 chr6 40313993 40314094 -109202943 + MIR3 SINE MIR 64 186 -22 4 892 338 240 50 40 chr6 40314600 40314700 -109202337 + PB1D10 SINE Alu 17 117 0 4 892 288 215 123 0 chr6 40314975 40314990 -109202047 - ID SINE ID -150 74 2 4 892 325 180 0 0 chr6 40314990 40315040 -109201997 - ID4 SINE ID -32 51 2 4 892 1325 267 106 58 chr6 40315083 40315779 -109201258 + L1MC1 LINE L1 5452 6181 -152 4 892 314 181 151 14 chr6 40316196 40316269 -109200768 + B1F SINE Alu 15 97 -52 4 892 276 30 0 0 chr6 40316879 40316912 -109200125 + (CATA)n Simple_repeat Simple_repeat 2 34 0 4 892 312 235 29 0 chr6 40316912 40316980 -109200057 - ID4_ SINE ID -10 73 4 4 892 423 308 0 33 chr6 40316990 40317111 -109199926 - PB1D10 SINE Alu 0 117 1 4 892 344 217 11 57 chr6 40317398 40317486 -109199551 + B4 SINE B4 41 124 -168 4 892 324 48 0 0 chr6 40317593 40317635 -109199402 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 892 789 216 99 0 chr6 40320766 40320947 -109196090 - B3 SINE B2 -16 200 2 4 892 409 319 103 42 chr6 40320992 40321303 -109195734 + L1ME1 LINE L1 5493 5822 -357 4 892 497 275 39 0 chr6 40321434 40321616 -109195421 + L1ME1 LINE L1 5991 6179 0 4 892 546 293 155 70 chr6 40321724 40322241 -109194796 + L1MCa LINE L1 53 613 -5895 4 892 285 290 71 19 chr6 40322279 40322490 -109194547 + L1MCa LINE L1 3007 3228 -3093 4 892 343 219 14 0 chr6 40322504 40322577 -109194460 + PB1D10 SINE Alu 36 109 -8 4 892 921 212 138 11 chr6 40322586 40322936 -109194101 + L1MCa LINE L1 3260 3620 -2701 4 892 601 277 115 59 chr6 40322950 40323472 -109193565 + L1MC1 LINE L1 5765 6315 -18 4 892 386 279 80 24 chr6 40323912 40324037 -109193000 + ID_B1 SINE B4 87 218 -6 4 892 791 272 44 0 chr6 40324046 40324252 -109192785 + ID_B1 SINE B4 1 215 -9 4 892 309 282 0 71 chr6 40324359 40324443 -109192594 + B3A SINE B2 2 79 -119 4 892 22 70 0 0 chr6 40324469 40324512 -109192525 + AT_rich Low_complexity Low_complexity 1 43 0 4 892 22 0 0 0 chr6 40324873 40324895 -109192142 + AT_rich Low_complexity Low_complexity 1 22 0 4 892 201 39 0 0 chr6 40325675 40325701 -109191336 + (T)n Simple_repeat Simple_repeat 1 26 0 4 892 384 346 31 0 chr6 40326757 40326884 -109190153 + ID_B1 SINE B4 94 224 0 4 892 236 274 83 0 chr6 40327186 40327270 -109189767 + L1MC4 LINE L1 6704 6794 -1248 4 892 341 341 72 82 chr6 40327474 40327988 -109189049 + L1MC4 LINE L1 7114 7622 -420 4 892 695 237 74 16 chr6 40328212 40328401 -109188636 + B3 SINE B2 15 214 -2 4 892 407 258 198 5 chr6 40329888 40330075 -109186962 + L2 LINE L2 2608 2830 -589 4 892 376 180 101 0 chr6 40330076 40330165 -109186872 + RLTR15 LTR ERVK 6 103 -256 4 892 294 164 0 0 chr6 40330477 40330532 -109186505 + CT-rich Low_complexity Low_complexity 4 58 0 4 892 270 247 21 21 chr6 40333999 40334094 -109182943 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 4 892 251 286 16 16 chr6 40334432 40334496 -109182541 + ID4 SINE ID 1 64 -19 4 892 2824 136 15 8 chr6 40335020 40335501 -109181536 + RLTR31_Mm LTR ERVK 1 484 -77 4 892 834 138 7 21 chr6 40335514 40335642 -109181395 + B1_Mus2 SINE Alu 9 137 -10 4 892 264 59 0 0 chr6 40335642 40335676 -109181361 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 892 834 138 7 21 chr6 40335676 40335688 -109181349 + B1_Mus2 SINE Alu 138 147 0 4 892 297 0 0 0 chr6 40336285 40336318 -109180719 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 892 206 200 0 0 chr6 40337282 40337317 -109179720 + C-rich Low_complexity Low_complexity 1 35 0 4 892 387 0 0 0 chr6 40337317 40337360 -109179677 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 892 200 135 0 26 chr6 40337360 40337398 -109179639 + GA-rich Low_complexity Low_complexity 2 38 0 4 892 248 298 101 40 chr6 40338627 40338903 -109178134 - Tigger8 DNA MER2_type -88 578 286 4 892 225 271 100 0 chr6 40339362 40339432 -109177605 - B3A SINE B2 -121 77 1 4 892 344 298 161 15 chr6 40339474 40339731 -109177306 - L1M5 LINE L1 -1538 4608 4324 4 892 297 51 0 0 chr6 40339731 40339770 -109177267 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 892 344 298 161 15 chr6 40339770 40339842 -109177195 - L1M5 LINE L1 -1823 4323 4231 4 892 252 262 56 99 chr6 40339926 40340087 -109176950 - L1M5 LINE L1 -2131 4015 3862 4 892 321 287 126 18 chr6 40340116 40340283 -109176754 + L1MEc LINE L1 48 232 -6168 4 892 334 279 78 47 chr6 40341069 40341325 -109175712 + L2 LINE L2 2650 2913 -506 4 892 341 318 61 0 chr6 40341449 40341581 -109175456 + MER5A DNA MER1_type 2 141 -48 4 892 451 168 327 42 chr6 40341758 40341926 -109175111 + B3 SINE B2 1 216 0 4 892 206 238 127 0 chr6 40343011 40343074 -109173963 + MIRc SINE MIR 77 147 -121 5 892 318 203 40 0 chr6 40343961 40344035 -109173002 - B1F SINE Alu -5 144 68 5 892 316 286 31 0 chr6 40344035 40344057 -109172980 - ID_B1 SINE B4 -3 219 121 5 892 190 236 50 91 chr6 40346446 40346567 -109170470 - MER5B DNA MER1_type -33 145 30 5 892 26 0 0 0 chr6 40346615 40346641 -109170396 + AT_rich Low_complexity Low_complexity 1 26 0 5 892 392 229 95 25 chr6 40346641 40346920 -109170117 - Charlie2a DNA MER1_type -68 2793 2490 5 892 1514 245 128 39 chr6 40346922 40347274 -109169763 - Lx8 LINE L1 -5 7468 7056 5 892 486 0 0 0 chr6 40347274 40347328 -109169709 + (TCCTG)n Simple_repeat Simple_repeat 3 56 0 5 892 1514 245 128 39 chr6 40347328 40347569 -109169468 - Lx8 LINE L1 -418 7055 6823 5 892 1418 99 25 29 chr6 40347613 40347853 -109169184 - Lx4A LINE L1 0 7058 6820 5 892 4256 150 94 96 chr6 40347853 40348283 -109168754 - RLTR25A LTR ERVK 0 1103 731 5 892 631 117 0 79 chr6 40348283 40348422 -109168615 - L1Md_F2 LINE L1 0 6582 6455 5 892 4256 150 94 96 chr6 40348422 40349096 -109167941 - RLTR25A LTR ERVK -373 730 1 5 892 3443 106 78 4 chr6 40349096 40349625 -109167412 - Lx4A LINE L1 -233 6825 6258 5 892 21 36 0 0 chr6 40349770 40349798 -109167239 + AT_rich Low_complexity Low_complexity 1 28 0 5 892 367 272 202 37 chr6 40349817 40350138 -109166899 - Charlie2b DNA MER1_type -628 2233 1781 5 892 1042 50 50 7 chr6 40350773 40350914 -109166123 + B1_Mus2 SINE Alu 1 147 0 5 892 210 100 77 39 chr6 40358584 40358636 -109158401 + (TTATA)n Simple_repeat Simple_repeat 5 58 0 5 892 225 0 0 0 chr6 40359248 40359273 -109157764 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 892 285 356 59 11 chr6 40359577 40359761 -109157276 + MLT1A0 LTR MaLR 1 201 -207 5 892 3258 85 26 9 chr6 40359972 40360437 -109156600 - L1_Mus3 LINE L1 -2 6636 6164 5 892 1504 171 44 16 chr6 40360836 40361276 -109155761 + RMER17C LTR ERVK 16 439 -519 5 892 351 152 152 0 chr6 40362016 40362121 -109154916 + Lx4A LINE L1 6932 7052 -6 5 892 22 0 0 0 chr6 40362131 40362153 -109154884 + AT_rich Low_complexity Low_complexity 1 22 0 5 892 270 136 0 0 chr6 40362153 40362197 -109154840 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 892 201 74 0 0 chr6 40362212 40362239 -109154798 + (A)n Simple_repeat Simple_repeat 1 27 0 5 892 323 295 31 54 chr6 40362239 40362368 -109154669 + B3A SINE B2 7 132 -66 5 892 183 42 0 0 chr6 40362371 40362395 -109154642 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 5 892 206 129 0 0 chr6 40363770 40363801 -109153236 - L2c LINE L2 -233 3154 3124 5 892 1428 69 0 81 chr6 40364141 40364362 -109152675 + L1_Mus2 LINE L1 6364 6566 0 5 892 832 226 50 25 chr6 40364406 40364646 -109152391 - MER2 DNA MER2_type -9 336 91 5 892 426 258 65 13 chr6 40364867 40365020 -109152017 - MER2 DNA MER2_type -94 251 91 5 892 324 0 0 0 chr6 40365274 40365310 -109151727 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 892 670 316 140 54 chr6 40366079 40366594 -109150443 + MLT1F2 LTR MaLR 1 559 -1 5 892 3677 15 0 0 chr6 40366869 40367278 -109149759 - L1Md_F2 LINE L1 -12 6570 6162 5 892 198 278 182 45 chr6 40367293 40367425 -109149612 + MIRb SINE MIR 13 162 -106 5 892 1595 127 21 28 chr6 40367636 40367919 -109149118 + ORR1B2 LTR MaLR 84 364 -3 5 892 509 266 148 59 chr6 40369316 40369670 -109147367 + MLT1C LTR MaLR 50 467 0 5 892 478 222 29 56 chr6 40370042 40370150 -109146887 + PB1D10 SINE Alu 1 105 -12 5 893 214 337 10 52 chr6 40371809 40371906 -109145131 + B4A SINE B4 3 95 -197 5 893 333 0 0 0 chr6 40371964 40372001 -109145036 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 5 893 198 171 0 0 chr6 40372931 40372972 -109144065 + T-rich Low_complexity Low_complexity 1 41 0 5 893 189 0 0 0 chr6 40374081 40374102 -109142935 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 5 893 647 201 7 0 chr6 40374201 40374350 -109142687 + (TA)n Simple_repeat Simple_repeat 2 151 0 5 893 266 263 73 81 chr6 40375839 40375963 -109141074 + MLT2F LTR ERVL 25 147 -516 5 893 264 320 64 0 chr6 40376042 40376120 -109140917 + MLT2F LTR ERVL 301 383 -280 5 893 369 257 0 79 chr6 40376139 40376253 -109140784 + PB1D9 SINE Alu 11 115 -5 5 893 465 34 0 0 chr6 40376631 40376690 -109140347 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 5 893 327 203 0 0 chr6 40376690 40376759 -109140278 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 5 893 330 292 25 42 chr6 40376863 40376981 -109140056 - PB1D7 SINE Alu -2 118 3 5 893 374 306 239 0 chr6 40377047 40377269 -109139768 + MLT1J LTR MaLR 1 275 -237 5 893 351 0 0 0 chr6 40377870 40377909 -109139128 + (T)n Simple_repeat Simple_repeat 1 39 0 5 893 272 301 36 43 chr6 40378024 40378163 -109138874 + L1MC4 LINE L1 7756 7893 -149 5 893 243 230 0 86 chr6 40378300 40378381 -109138656 + L1MC LINE L1 4576 4649 -1497 5 893 338 338 88 41 chr6 40378657 40378999 -109138038 + Tigger9b DNA MER2_type 267 624 0 5 893 269 270 67 0 chr6 40379002 40379091 -109137946 + L1MC4 LINE L1 7919 8013 -29 5 893 250 246 0 15 chr6 40379155 40379221 -109137816 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 5 893 296 276 0 0 chr6 40380099 40380157 -109136880 + ID4_ SINE ID 24 81 -2 5 893 641 194 96 15 chr6 40380600 40380736 -109136301 + B1F SINE Alu 2 148 -1 5 893 237 214 42 28 chr6 40381800 40381872 -109135165 - PB1D10 SINE Alu -1 116 44 5 893 687 62 0 0 chr6 40382069 40382166 -109134871 + (CA)n Simple_repeat Simple_repeat 2 98 0 5 893 264 100 0 0 chr6 40382575 40382615 -109134422 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 893 1005 258 101 22 chr6 40382871 40383188 -109133849 + MTEb LTR MaLR 1 342 -37 5 893 189 0 0 0 chr6 40383235 40383256 -109133781 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 893 297 0 0 0 chr6 40384235 40384268 -109132769 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 5 893 248 170 19 0 chr6 40387526 40387579 -109129458 + CT-rich Low_complexity Low_complexity 2 55 0 5 893 914 116 27 20 chr6 40387624 40387773 -109129264 - B1_Mur4 SINE Alu 0 150 1 5 893 297 0 0 0 chr6 40387812 40387845 -109129192 + (TTG)n Simple_repeat Simple_repeat 2 34 0 5 893 190 342 82 0 chr6 40389684 40389757 -109127280 - L2 LINE L2 -556 2863 2785 5 893 382 304 31 31 chr6 40390267 40390396 -109126641 + B4 SINE B4 11 139 -153 5 893 21 58 0 19 chr6 40391402 40391421 -109125616 + AT_rich Low_complexity Low_complexity 1 19 0 5 893 947 230 9 32 chr6 40391421 40391641 -109125396 + B3 SINE B2 2 216 0 5 893 21 58 0 19 chr6 40391641 40391674 -109125363 + AT_rich Low_complexity Low_complexity 1 33 0 5 893 495 0 0 0 chr6 40392087 40392142 -109124895 + (CCCCCA)n Simple_repeat Simple_repeat 1 55 0 5 893 213 93 70 0 chr6 40392241 40392284 -109124753 + T-rich Low_complexity Low_complexity 2 47 0 5 893 1275 45 0 0 chr6 40394911 40395065 -109121972 + B2_Mm2 SINE B2 1 154 -41 5 893 279 0 0 0 chr6 40395066 40395097 -109121940 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 893 371 145 0 14 chr6 40395491 40395561 -109121476 + CT-rich Low_complexity Low_complexity 3 71 0 5 893 259 372 38 32 chr6 40395915 40396101 -109120936 - L2c LINE L2 -143 3244 3058 5 893 573 149 190 25 chr6 40398832 40398990 -109118047 + Lx9 LINE L1 7306 7489 -155 5 893 339 0 0 0 chr6 40400117 40400156 -109116881 - tRNA-Thr-ACA tRNA tRNA -37 39 1 5 893 204 40 0 0 chr6 40400321 40400346 -109116691 + (A)n Simple_repeat Simple_repeat 1 25 0 5 893 413 93 147 18 chr6 40400347 40400456 -109116581 + L1Md_F2 LINE L1 6460 6582 0 5 893 591 279 0 19 chr6 40400601 40400758 -109116279 - RSINE1 SINE B4 0 165 12 5 893 352 23 0 0 chr6 40401233 40401276 -109115761 + L1_Mus2 LINE L1 6190 6232 -334 5 893 1216 68 0 0 chr6 40401677 40401824 -109115213 - B1_Mm SINE Alu 0 147 1 5 893 1096 130 73 161 chr6 40401843 40401984 -109115053 + URR1A DNA MER1_type 1 142 -84 5 893 971 209 19 14 chr6 40401984 40402193 -109114844 + B3 SINE B2 2 211 -5 5 893 1096 130 73 161 chr6 40402193 40402299 -109114738 + URR1A DNA MER1_type 143 226 0 5 893 6704 58 2 8 chr6 40402863 40403753 -109113284 + L1_Mus1 LINE L1 5683 6567 0 5 893 267 103 0 0 chr6 40404178 40404217 -109112820 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 5 893 216 0 0 0 chr6 40404850 40404874 -109112163 + (A)n Simple_repeat Simple_repeat 1 24 0 5 893 500 234 126 0 chr6 40405478 40405589 -109111448 - B1_Mur1 SINE Alu -15 134 10 5 893 1306 264 88 11 chr6 40405776 40406129 -109110908 - MTD LTR MaLR -39 380 1 5 893 295 304 43 0 chr6 40406621 40406713 -109110324 + MIRb SINE MIR 16 111 -157 5 893 26 30 0 0 chr6 40409615 40409648 -109107389 + AT_rich Low_complexity Low_complexity 1 33 0 5 893 21 0 0 0 chr6 40410280 40410301 -109106736 + AT_rich Low_complexity Low_complexity 1 21 0 5 893 358 289 66 11 chr6 40411653 40411744 -109105293 + B1_Mur1 SINE Alu 34 129 -20 5 893 188 170 0 41 chr6 40411757 40411806 -109105231 + GA-rich Low_complexity Low_complexity 3 49 0 5 893 312 263 40 40 chr6 40412312 40412411 -109104626 - PB1D10 SINE Alu 0 117 19 5 893 423 0 0 0 chr6 40415140 40415187 -109101850 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 893 225 0 0 0 chr6 40415203 40415228 -109101809 + (TA)n Simple_repeat Simple_repeat 2 26 0 5 893 25 31 0 0 chr6 40417015 40417047 -109099990 + AT_rich Low_complexity Low_complexity 1 32 0 5 893 180 0 0 0 chr6 40417084 40417104 -109099933 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 893 1982 146 9 16 chr6 40417201 40417521 -109099516 + ORR1A3 LTR MaLR 1 318 -8 5 893 333 0 0 0 chr6 40417649 40417686 -109099351 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 893 374 0 22 0 chr6 40417686 40417731 -109099306 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 893 251 313 62 32 chr6 40417843 40417998 -109099039 - LTRIS3 LTR ERV1 -53 511 302 5 893 1182 178 80 101 chr6 40418499 40418887 -109098150 - ORR1C2 LTR MaLR 0 384 5 6 893 256 290 182 8 chr6 40420185 40420317 -109096720 + MER96B DNA hAT 2 156 -261 6 893 643 170 0 88 chr6 40420375 40420523 -109096514 + B1_Mur1 SINE Alu 2 136 -13 6 893 468 51 0 0 chr6 40420532 40420591 -109096446 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 893 211 145 0 28 chr6 40421167 40421238 -109095799 + A-rich Low_complexity Low_complexity 2 70 0 6 893 198 71 0 0 chr6 40422296 40422324 -109094713 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 893 372 311 38 8 chr6 40422481 40422614 -109094423 - ID_B1 SINE B4 -7 217 81 6 893 3516 116 136 30 chr6 40424817 40425492 -109091545 + RMER6A LTR ERVK 2 748 -8 6 893 246 217 0 0 chr6 40425494 40425540 -109091497 + RMER6A LTR ERVK 711 756 0 6 893 621 340 26 45 chr6 40425997 40426305 -109090732 - MLT1A LTR MaLR -71 303 2 6 893 213 39 0 0 chr6 40426620 40426646 -109090391 + (T)n Simple_repeat Simple_repeat 1 26 0 6 893 26 0 0 0 chr6 40427205 40427231 -109089806 + AT_rich Low_complexity Low_complexity 1 26 0 6 893 207 69 0 0 chr6 40427527 40427556 -109089481 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 893 351 230 0 0 chr6 40427561 40427630 -109089407 - ID4 SINE ID -77 75 7 6 893 246 239 289 0 chr6 40428526 40428706 -109088331 - Charlie2b DNA MER1_type -559 2223 1992 6 893 1286 87 54 0 chr6 40429197 40429382 -109087655 + B2_Mm2 SINE B2 1 195 0 6 893 253 281 0 0 chr6 40429749 40429831 -109087206 + T-rich Low_complexity Low_complexity 1 82 0 6 893 201 176 0 0 chr6 40430262 40430296 -109086741 + T-rich Low_complexity Low_complexity 1 34 0 6 893 781 197 13 20 chr6 40430296 40430446 -109086591 - B1_Mur4 SINE Alu 0 150 2 6 893 22 0 0 0 chr6 40430968 40430990 -109086047 + AT_rich Low_complexity Low_complexity 1 22 0 6 893 198 0 0 0 chr6 40431030 40431052 -109085985 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 893 286 289 147 8 chr6 40433732 40433861 -109083176 - MIRb SINE MIR -34 234 88 6 893 228 321 163 56 chr6 40434489 40434667 -109082370 + MIRb SINE MIR 13 209 -59 6 893 616 330 112 0 chr6 40435473 40435706 -109081331 + B4A SINE B4 13 271 -21 6 893 387 299 129 81 chr6 40436156 40436451 -109080586 + MLT1J LTR MaLR 135 443 -69 6 893 195 42 0 0 chr6 40436673 40436697 -109080340 + (C)n Simple_repeat Simple_repeat 1 24 0 6 893 326 299 129 6 chr6 40436887 40437065 -109079972 - MLT1B LTR MaLR -2 388 189 6 893 1169 55 7 7 chr6 40437265 40437411 -109079626 + B1_Mus2 SINE Alu 1 146 -1 6 893 216 0 0 0 chr6 40438229 40438253 -109078784 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 893 183 100 0 0 chr6 40438253 40438283 -109078754 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 893 3031 78 8 0 chr6 40438360 40438757 -109078280 + MTB LTR MaLR 1 400 0 6 893 6885 85 36 70 chr6 40438757 40439894 -109077143 + MTB-int LTR MaLR 1 1098 0 6 893 2966 58 39 3 chr6 40439894 40440276 -109076761 + MTB LTR MaLR 1 396 0 6 893 739 269 26 77 chr6 40440661 40440959 -109076078 - ORR1E LTR MaLR -8 351 4 6 893 232 374 87 94 chr6 40445733 40446031 -109071006 + MLT1J LTR MaLR 157 452 -60 6 893 241 307 91 26 chr6 40446280 40446357 -109070680 - ID4_ SINE ID 0 83 2 6 893 3298 273 91 20 chr6 40446748 40447905 -109069132 - Lx8 LINE L1 -10 7463 6225 6 893 601 257 0 56 chr6 40448163 40448307 -109068730 + B3A SINE B2 1 136 -62 6 893 1364 79 10 10 chr6 40448311 40448503 -109068534 - B2_Mm1t SINE B2 0 193 2 6 893 22 0 0 0 chr6 40448579 40448601 -109068436 + AT_rich Low_complexity Low_complexity 1 22 0 6 893 897 291 30 118 chr6 40448663 40449068 -109067969 - MTE2b LTR MaLR 0 379 11 6 893 3845 227 40 14 chr6 40449222 40450096 -109066941 - Lx5 LINE L1 -5 7045 6119 6 893 435 188 71 0 chr6 40450096 40450181 -109066856 - MurERV4-int LTR ERVK -3589 1671 1581 6 893 2101 120 68 0 chr6 40450399 40450725 -109066312 + Lx2B LINE L1 6480 6827 -173 6 893 1408 311 53 14 chr6 40450736 40451300 -109065737 + Lx8 LINE L1 6690 7275 -198 6 893 961 264 50 105 chr6 40452171 40452552 -109064485 + MTE2a LTR MaLR 3 362 -17 6 893 295 302 141 25 chr6 40453195 40453358 -109063679 - MIRb SINE MIR -83 185 4 6 893 902 336 48 38 chr6 40453834 40454199 -109062838 - Lx8 LINE L1 -157 7316 6959 6 893 387 0 0 0 chr6 40454199 40454242 -109062795 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 893 902 336 48 38 chr6 40454242 40454377 -109062660 - Lx8 LINE L1 -515 6958 6811 6 893 1147 304 55 9 chr6 40454427 40454862 -109062175 - Lx8 LINE L1 -643 6830 6376 6 893 501 309 62 7 chr6 40454901 40455175 -109061862 - L1M2a LINE L1 -2489 4675 4387 6 893 428 244 137 19 chr6 40455243 40455570 -109061467 - L1M2a LINE L1 -4752 2416 2010 6 893 382 271 140 40 chr6 40455578 40455827 -109061210 - MTEa LTR MaLR 0 379 64 6 893 2150 133 9 6 chr6 40456874 40457200 -109059837 - ORR1A2 LTR MaLR 0 327 1 6 893 4778 116 68 8 chr6 40457721 40459137 -109057900 + Lx LINE L1 5033 6970 -27 6 893 408 40 0 0 chr6 40459137 40459187 -109057850 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 6 893 450 0 0 0 chr6 40459195 40459245 -109057792 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 893 231 287 84 29 chr6 40459248 40459370 -109057667 - MIR SINE MIR -140 136 9 6 893 1119 210 31 19 chr6 40459870 40460127 -109056910 + Lx5 LINE L1 6355 6614 -436 6 893 268 186 265 0 chr6 40460174 40460276 -109056761 + L1MA9 LINE L1 6174 6302 -10 6 893 773 244 173 22 chr6 40460896 40461168 -109055869 + MTE-int LTR MaLR 274 586 -994 6 893 298 304 58 61 chr6 40461479 40461673 -109055364 + ORR1C1 LTR MaLR 29 234 -144 6 893 814 319 85 37 chr6 40461833 40462584 -109054453 + L1M4 LINE L1 3434 4220 -1926 6 893 668 272 16 16 chr6 40463029 40463216 -109053821 - MLT1A0 LTR MaLR -165 200 14 6 893 1651 124 74 0 chr6 40464051 40464160 -109052877 - Lx2 LINE L1 -2 6995 6886 6 893 186 43 0 0 chr6 40464160 40464183 -109052854 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 6 893 1651 124 74 0 chr6 40464183 40464331 -109052706 - Lx2 LINE L1 -112 6885 6720 6 893 416 178 16 44 chr6 40466425 40466607 -109050430 + (CAT)n Simple_repeat Simple_repeat 1 177 0 6 893 231 323 50 30 chr6 40466628 40466727 -109050310 - MIRb SINE MIR -34 234 134 6 893 446 369 141 28 chr6 40466944 40467192 -109049845 + LTR33 LTR ERVL 24 299 -216 6 893 523 276 44 22 chr6 40467487 40467624 -109049413 - MER20 DNA MER1_type -79 140 1 6 893 255 333 30 0 chr6 40468041 40468173 -109048864 + L1M5 LINE L1 5550 5685 -439 6 893 263 244 55 11 chr6 40469985 40470076 -109046961 - Lx7 LINE L1 -7 7689 7595 6 893 1290 262 164 18 chr6 40470077 40470582 -109046455 - Lx7 LINE L1 -314 7382 6804 6 893 285 75 0 0 chr6 40471192 40471232 -109045805 + (TATG)n Simple_repeat Simple_repeat 3 42 0 6 893 231 36 0 0 chr6 40471232 40471260 -109045777 + (CCTA)n Simple_repeat Simple_repeat 1 28 0 6 893 23 0 0 0 chr6 40472286 40472309 -109044728 + AT_rich Low_complexity Low_complexity 1 23 0 6 893 249 163 0 0 chr6 40472816 40472865 -109044172 + CT-rich Low_complexity Low_complexity 3 51 0 6 893 542 106 0 9 chr6 40473304 40473409 -109043628 - L1_Mus1 LINE L1 0 6567 6464 6 893 6153 71 1 1 chr6 40473409 40474253 -109042784 - L1_Mm LINE L1 -633 5250 4407 6 893 1547 222 39 19 chr6 40474256 40474619 -109042418 - ORR1D1 LTR MaLR -4 370 1 6 893 360 378 47 36 chr6 40474619 40474896 -109042141 + ORR1E LTR MaLR 80 359 0 6 893 894 337 60 40 chr6 40474953 40475407 -109041630 + MTE-int LTR MaLR 122 584 -996 6 893 333 340 0 80 chr6 40475390 40475413 -109041624 + B4A SINE B4 71 84 -208 6 893 349 287 7 38 chr6 40475413 40475515 -109041522 + B1F2 SINE Alu 3 104 -46 6 893 284 230 176 0 chr6 40476030 40476104 -109040933 + MTD LTR MaLR 19 105 -314 6 893 267 133 0 0 chr6 40476126 40476171 -109040866 + (TCTCC)n Simple_repeat Simple_repeat 3 47 0 6 893 4485 78 33 9 chr6 40476347 40477043 -109039994 - Lx3_Mus LINE L1 -514 6495 5783 6 893 716 84 0 194 chr6 40477042 40477233 -109039804 - L1Md_F2 LINE L1 0 6582 6429 6 893 23916 77 30 24 chr6 40477233 40479691 -109037346 - Lx3_Mus LINE L1 -98 5788 3345 6 893 3147 56 8 2 chr6 40479691 40480085 -109036952 - MTA_Mm LTR MaLR 0 396 1 6 893 23916 77 30 24 chr6 40480085 40481334 -109035703 - Lx3_Mus LINE L1 -2542 3344 2056 6 893 1004 191 105 13 chr6 40481306 40481675 -109035362 - Lx3_Mus LINE L1 -6078 906 209 6 893 285 146 0 0 chr6 40481675 40481723 -109035314 + (T)n Simple_repeat Simple_repeat 1 48 0 6 893 321 217 29 135 chr6 40481723 40481931 -109035106 - RMER17C LTR ERVK -135 275 90 6 893 3654 184 34 65 chr6 40481940 40483096 -109033941 - Lx5 LINE L1 -878 6172 5021 6 893 1089 224 80 86 chr6 40483099 40483412 -109033625 + MTD LTR MaLR 109 419 0 6 893 228 67 0 0 chr6 40483912 40483942 -109033095 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6 893 492 302 8 0 chr6 40483942 40484071 -109032966 + RCHARR1 DNA MER1_type 70 199 -775 6 893 435 333 8 0 chr6 40484381 40484498 -109032539 - RSINE1 SINE B4 -45 120 3 6 893 225 0 0 0 chr6 40484542 40484567 -109032470 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 893 388 351 179 0 chr6 40484567 40484694 -109032343 - RSINE1 SINE B4 -12 153 3 6 893 329 300 56 57 chr6 40484953 40485242 -109031795 - L1MC5 LINE L1 -1147 6895 6618 6 893 36327 29 0 0 chr6 40485459 40491901 -109025136 - L1Md_T LINE L1 0 6585 47 6 893 260 327 29 10 chr6 40491988 40492090 -109024947 + B1F1 SINE Alu 44 147 -2 6 893 1242 41 0 0 chr6 40495970 40496117 -109020920 - B1_Mm SINE Alu 0 147 1 6 893 6266 78 11 34 chr6 40496533 40497462 -109019575 + RLTR13A2 LTR ERVK 52 958 0 6 893 20030 20 5 22 chr6 40497462 40500000 -109017037 + ETnERV3-int LTR ERVK 1 2495 -3313 6 111 25030 41 6 3 chr6 40500000 40503280 -109013757 + ETnERV3-int LTR ERVK 2496 5786 -22 1 894 6228 74 7 22 chr6 40503299 40504174 -109012863 + RLTR13A2 LTR ERVK 97 958 0 2 894 235 311 56 32 chr6 40505574 40505700 -109011337 + ORR1D2 LTR MaLR 86 214 -156 3 894 295 316 42 16 chr6 40505861 40505999 -109011038 - MLT1A1-int LTR MaLR -1587 148 6 4 894 378 235 30 49 chr6 40506013 40506149 -109010888 - MLT1A1 LTR MaLR 0 408 247 4 894 21 36 0 0 chr6 40506300 40506328 -109010709 + AT_rich Low_complexity Low_complexity 1 28 0 5 894 252 331 0 15 chr6 40506400 40506532 -109010505 - Lx9 LINE L1 -171 7473 7344 6 894 22498 58 0 0 chr6 40506555 40510254 -109006783 - L1Md_T LINE L1 0 6582 2884 7 894 1509 167 0 0 chr6 40510259 40510528 -109006509 - L1Md_F LINE L1 -6244 275 7 8 894 241 325 73 10 chr6 40510878 40511192 -109005845 - L1M5 LINE L1 -259 5920 5587 9 894 1212 256 74 12 chr6 40511657 40511981 -109005056 + MTD LTR MaLR 76 419 0 1 894 21 89 0 0 chr6 40512032 40512088 -109004949 + AT_rich Low_complexity Low_complexity 1 56 0 1 894 2213 170 3 5 chr6 40512254 40512633 -109004404 + RLTR14 LTR ERV1 1 378 -4 1 894 271 226 167 36 chr6 40512713 40512851 -109004186 - Lx8 LINE L1 -5 7468 7313 1 894 294 29 0 0 chr6 40513032 40513067 -109003970 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1 894 3714 234 49 8 chr6 40513185 40514084 -109002953 - Lx5 LINE L1 -216 6834 5899 1 894 378 289 30 52 chr6 40514085 40514220 -109002817 - Lx8 LINE L1 -221 7252 7121 1 894 1479 280 74 30 chr6 40514280 40514890 -109002147 + Lx8 LINE L1 6492 7128 -345 1 894 5717 184 59 7 chr6 40514900 40516072 -109000965 - Lx5 LINE L1 -36 7014 5782 1 894 462 79 0 0 chr6 40516076 40516139 -109000898 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1 894 8116 153 16 13 chr6 40516155 40517607 -108999430 - Lx4B LINE L1 -38 7020 5589 1 894 1166 196 28 10 chr6 40517670 40517958 -108999079 - Lx4B LINE L1 -5960 1126 834 1 894 1167 110 0 0 chr6 40518115 40518344 -108998693 + (TG)n Simple_repeat Simple_repeat 1 229 0 2 894 719 270 98 31 chr6 40518392 40518648 -108998389 - B4A SINE B4 -18 274 2 2 894 458 339 40 46 chr6 40522485 40522536 -108994501 - Lx7 LINE L1 -79 7394 7338 2 894 198 0 0 0 chr6 40522536 40522558 -108994479 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 894 764 287 19 26 chr6 40522558 40522842 -108994195 - Lx7 LINE L1 -136 7337 7049 2 894 237 65 0 0 chr6 40522946 40522977 -108994060 + (GGGAGA)n Simple_repeat Simple_repeat 4 34 0 2 894 458 344 25 1 chr6 40524543 40524683 -108992354 + B1F SINE Alu 5 147 -1 2 894 311 310 64 6 chr6 40525336 40525492 -108991545 + L1MB7 LINE L1 5497 5661 -517 2 894 411 257 28 14 chr6 40525911 40526053 -108990984 + L1MB7 LINE L1 5829 5972 -212 2 894 239 206 31 16 chr6 40526066 40526130 -108990907 + L1MB7 LINE L1 6070 6134 -44 2 894 297 256 0 34 chr6 40527262 40527351 -108989686 + CT-rich Low_complexity Low_complexity 3 88 0 2 894 256 89 76 38 chr6 40529108 40529213 -108987824 + (TATAA)n Simple_repeat Simple_repeat 2 110 0 2 894 421 307 80 93 chr6 40530374 40530600 -108986437 + B4A SINE B4 6 228 -64 2 894 510 17 0 0 chr6 40530628 40530687 -108986350 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 894 560 342 12 6 chr6 40531063 40531225 -108985812 - RSINE1 SINE B4 0 165 3 3 894 200 119 0 67 chr6 40531230 40531249 -108985788 + (TTTA)n Simple_repeat Simple_repeat 1 19 0 3 894 423 0 0 0 chr6 40531249 40531296 -108985741 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 894 200 119 0 67 chr6 40531296 40531321 -108985716 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3 894 593 319 0 77 chr6 40531326 40531496 -108985541 - RSINE1 SINE B4 -6 159 3 3 894 601 232 70 7 chr6 40532982 40533125 -108983912 + B3 SINE B2 65 216 0 3 894 432 143 0 0 chr6 40533318 40533402 -108983635 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 894 998 323 18 18 chr6 40533449 40533733 -108983304 - B4A SINE B4 0 292 9 3 894 1161 55 0 0 chr6 40533753 40533899 -108983138 - B1_Mus2 SINE Alu 0 147 2 3 894 659 153 0 0 chr6 40533899 40533997 -108983040 - B1_Mus2 SINE Alu -47 100 3 4 894 440 244 22 80 chr6 40533997 40534037 -108983000 - MT2B LTR ERVL -346 255 126 4 894 256 214 52 91 chr6 40534122 40534199 -108982838 + ID4 SINE ID 1 74 -9 4 894 450 0 0 0 chr6 40534774 40534824 -108982213 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 894 23 0 0 0 chr6 40536148 40536171 -108980866 + AT_rich Low_complexity Low_complexity 1 23 0 4 894 522 0 0 0 chr6 40536220 40536278 -108980759 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 894 870 153 15 0 chr6 40537412 40537549 -108979488 + B1_Mur3 SINE Alu 3 141 -8 4 894 25 0 0 0 chr6 40537574 40537599 -108979438 + AT_rich Low_complexity Low_complexity 1 25 0 4 894 688 345 77 38 chr6 40538284 40538676 -108978361 + Charlie8 DNA MER1_type 960 1366 -1062 4 894 225 65 0 0 chr6 40538701 40538732 -108978305 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 894 201 39 0 0 chr6 40538867 40538893 -108978144 + (TATG)n Simple_repeat Simple_repeat 3 28 0 5 894 343 241 141 2 chr6 40539186 40539289 -108977748 + ORR1E LTR MaLR 256 370 0 5 894 279 267 0 0 chr6 40539523 40539598 -108977439 + MER104 DNA Tc2 107 181 0 5 894 291 236 42 68 chr6 40539844 40539962 -108977075 + MTD LTR MaLR 2 116 -303 5 894 186 43 0 0 chr6 40539964 40539987 -108977050 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 5 894 2891 245 30 9 chr6 40540064 40540728 -108976309 - Lx6 LINE L1 -169 7291 6614 5 894 978 153 59 69 chr6 40540725 40540928 -108976109 + Lx6 LINE L1 6418 6618 -842 5 894 905 283 124 11 chr6 40540931 40541213 -108975824 + MTD LTR MaLR 106 419 0 5 894 675 285 138 21 chr6 40541222 40541642 -108975395 - L1MA6 LINE L1 -41 6259 5791 5 894 8082 27 3 2 chr6 40541882 40543049 -108973988 - L1Md_F2 LINE L1 -11 6571 5404 5 894 238 287 0 61 chr6 40543382 40543497 -108973540 + BC1_Mm scRNA scRNA 4 111 -41 5 894 243 81 15 61 chr6 40543784 40543850 -108973187 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 5 894 367 165 0 0 chr6 40543907 40543998 -108973039 - MusHAL1 LINE L1 -1819 893 803 6 894 4843 88 106 4 chr6 40543999 40544726 -108972311 + Lx LINE L1 5844 6644 -10 6 894 1252 123 57 0 chr6 40545126 40545337 -108971700 - Lx3_Mus LINE L1 -1 7008 6786 6 894 227 343 14 0 chr6 40546174 40546244 -108970793 + ID2 SINE ID 3 73 -10 6 894 280 323 0 0 chr6 40546258 40546351 -108970686 + L1MEf LINE L1 1237 1329 -4913 6 894 5391 188 37 6 chr6 40546497 40547557 -108969480 - Lx5 LINE L1 -8 7042 5950 6 894 3718 72 0 2 chr6 40547558 40548071 -108968966 + L1_Mur1 LINE L1 5066 5577 -309 6 894 3789 133 25 6 chr6 40548066 40548427 -108968610 - L1_Mur2 LINE L1 -918 4959 4591 6 894 1989 150 17 79 chr6 40548427 40548846 -108968191 - RLTR9C LTR ERVK 0 393 1 6 894 3789 133 25 6 chr6 40548846 40549172 -108967865 - L1_Mur2 LINE L1 -1287 4590 4261 6 894 38240 26 1 6 chr6 40549317 40555552 -108961485 - L1Md_T LINE L1 -2 6580 381 6 894 261 344 46 0 chr6 40555582 40555733 -108961304 + L1MEf LINE L1 1614 1771 -4471 6 894 761 289 49 9 chr6 40555728 40556073 -108960964 + L1MA8 LINE L1 5921 6279 -12 7 894 24 53 0 0 chr6 40556194 40556232 -108960805 + AT_rich Low_complexity Low_complexity 1 38 0 7 894 513 288 82 20 chr6 40556361 40556831 -108960206 - Lx9 LINE L1 -137 7507 6960 7 894 821 223 10 3 chr6 40556822 40557054 -108959983 - Lx9 LINE L1 -1714 5930 5662 7 894 2423 216 48 23 chr6 40557051 40557704 -108959333 + Lx9 LINE L1 4986 5654 -193 7 894 1994 114 47 7 chr6 40557716 40558015 -108959022 - ORR1A2 LTR MaLR 0 327 17 7 894 525 262 16 16 chr6 40558048 40558172 -108958865 - RSINE1 SINE B4 -39 126 3 7 894 698 100 0 62 chr6 40558226 40558354 -108958683 + Lx LINE L1 6531 6650 -4 7 894 630 324 91 68 chr6 40558389 40559284 -108957753 + L1MEf LINE L1 4304 5218 -928 6 894 23 68 0 0 chr6 40559376 40559420 -108957617 + AT_rich Low_complexity Low_complexity 1 44 0 7 894 184 59 0 56 chr6 40559475 40559511 -108957526 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 894 432 336 125 17 chr6 40559523 40559978 -108957059 + L1MEf LINE L1 5271 5782 -382 6 894 795 299 86 9 chr6 40560257 40560722 -108956315 + L1MC1 LINE L1 5435 5935 -398 7 894 366 307 66 18 chr6 40560977 40561143 -108955894 - MER5B DNA MER1_type -1 177 4 7 894 1073 89 7 0 chr6 40561459 40561605 -108955432 - B1_Mus1 SINE Alu 0 148 2 8 894 4266 102 40 58 chr6 40563934 40564190 -108952847 + Lx2 LINE L1 6306 6561 -436 8 894 288 0 0 0 chr6 40564190 40564222 -108952815 + (TGG)n Simple_repeat Simple_repeat 1 32 0 8 894 4266 102 40 58 chr6 40564222 40564295 -108952742 + Lx2 LINE L1 6562 6605 -392 8 894 2185 175 74 112 chr6 40564295 40564849 -108952188 + RMER16 LTR ERVK 1 533 0 8 894 4266 102 40 58 chr6 40564849 40565223 -108951814 + Lx2 LINE L1 6606 6997 0 8 894 1125 76 0 14 chr6 40565233 40565370 -108951667 + B1_Mm SINE Alu 1 137 -10 8 894 288 0 0 0 chr6 40565370 40565402 -108951635 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 894 221 211 0 34 chr6 40566348 40566407 -108950630 + A-rich Low_complexity Low_complexity 4 60 0 8 894 899 169 0 6 chr6 40566407 40566585 -108950452 + GA-rich Low_complexity Low_complexity 4 180 0 8 894 4061 174 30 24 chr6 40567014 40567802 -108949235 - Lx5 LINE L1 -46 7004 6212 8 894 23 33 0 0 chr6 40567915 40567945 -108949092 + AT_rich Low_complexity Low_complexity 1 30 0 8 894 280 89 54 0 chr6 40568015 40568071 -108948966 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 9 894 202 309 28 93 chr6 40568354 40568461 -108948576 - MIRc SINE MIR -125 143 44 9 894 180 0 0 0 chr6 40568534 40568554 -108948483 + (TA)n Simple_repeat Simple_repeat 1 20 0 9 894 216 0 0 0 chr6 40568554 40568577 -108948460 + (GA)n Simple_repeat Simple_repeat 2 25 0 9 894 4460 153 26 16 chr6 40569062 40569912 -108947125 - Lx2B LINE L1 -260 6740 5883 9 894 948 98 14 0 chr6 40569908 40570051 -108946986 - L1_Mur1 LINE L1 -305 5581 5437 9 894 3613 146 7 7 chr6 40570053 40570667 -108946370 - Lx2B LINE L1 0 5886 5273 9 894 4285 139 7 45 chr6 40570668 40571494 -108945543 + L1_Mur2 LINE L1 4745 5539 -338 9 894 959 71 0 0 chr6 40571528 40571654 -108945383 + B1_Mus1 SINE Alu 2 127 -21 9 894 283 344 23 53 chr6 40571651 40571783 -108945254 + MER5A DNA MER1_type 61 188 -1 9 894 6064 87 11 5 chr6 40571898 40572738 -108944299 - Lx LINE L1 -2 6652 5808 9 894 6855 146 16 3 chr6 40572738 40573951 -108943086 + Lx LINE L1 4586 5813 -70 9 894 563 264 104 45 chr6 40573999 40574201 -108942836 + B3 SINE B2 1 214 -2 1 894 655 236 40 6 chr6 40574226 40574364 -108942673 + B1_Mur1 SINE Alu 6 141 -173 1 894 1809 251 162 96 chr6 40575636 40576442 -108940595 - RMER13A LTR ERVK 0 860 1 1 894 495 0 0 0 chr6 40577068 40577123 -108939914 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 894 339 25 0 0 chr6 40577559 40577599 -108939438 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1 894 267 305 90 15 chr6 40578562 40578695 -108938342 + MIRc SINE MIR 122 264 -4 1 894 246 116 0 0 chr6 40579093 40579136 -108937901 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 894 296 182 75 15 chr6 40579319 40579385 -108937652 - ID4_ SINE ID -2 81 8 1 894 309 271 82 10 chr6 40579392 40579417 -108937620 - PB1D10 SINE Alu -2 115 84 1 894 723 24 0 0 chr6 40579417 40579502 -108937535 + (TA)n Simple_repeat Simple_repeat 2 86 0 1 894 309 271 82 10 chr6 40579502 40579573 -108937464 - PB1D10 SINE Alu -34 83 12 1 894 377 86 0 17 chr6 40579654 40579713 -108937324 + (TAA)n Simple_repeat Simple_repeat 2 59 0 1 894 190 308 139 16 chr6 40579785 40579907 -108937130 - MIRb SINE MIR -107 161 25 1 894 216 304 181 0 chr6 40580545 40580683 -108936354 + MIR SINE MIR 91 253 -9 1 894 2174 58 7 0 chr6 40580824 40581117 -108935920 - L1_Mus2 LINE L1 -671 5895 5601 1 894 256 295 42 67 chr6 40581601 40581721 -108935316 + MIRb SINE MIR 36 152 -116 1 894 5409 110 20 11 chr6 40582433 40583231 -108933806 + Lx LINE L1 5842 6646 -8 1 894 342 260 63 34 chr6 40583231 40583406 -108933631 - MER5C DNA MER1_type -79 234 55 1 894 738 277 159 25 chr6 40583489 40583929 -108933108 + Charlie4a DNA MER1_type 4 502 -6 1 894 1559 47 0 20 chr6 40583985 40584181 -108932856 - B2_Mm1a SINE B2 0 193 2 1 894 942 183 99 66 chr6 40584472 40584683 -108932354 - URR1B DNA MER1_type 0 225 8 1 894 1189 47 0 7 chr6 40586461 40586610 -108930427 - B1_Mus1 SINE Alu 0 148 1 1 894 388 335 75 19 chr6 40586903 40587116 -108929921 + L2a LINE L2 3185 3409 -17 1 894 321 309 116 14 chr6 40587483 40587621 -108929416 + MIRb SINE MIR 67 218 -50 1 894 215 250 15 77 chr6 40588057 40588069 -108928968 - ID SINE ID -138 86 26 1 894 223 245 19 0 chr6 40588069 40588122 -108928915 - ID4_ SINE ID -5 78 25 1 894 369 0 0 0 chr6 40588146 40588187 -108928850 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 894 906 176 8 8 chr6 40588187 40588441 -108928596 + GA-rich Low_complexity Low_complexity 1 254 0 1 894 216 0 0 0 chr6 40589272 40589296 -108927741 + (TAG)n Simple_repeat Simple_repeat 2 25 0 1 894 1070 199 0 58 chr6 40591419 40591643 -108925394 + B3 SINE B2 1 211 -5 1 894 309 270 61 0 chr6 40591790 40591905 -108925132 + L1MC5 LINE L1 6783 6904 -1138 1 894 313 315 48 7 chr6 40592156 40592303 -108924734 + L1MC5 LINE L1 7087 7239 -722 1 894 21 36 0 0 chr6 40592742 40592770 -108924267 + AT_rich Low_complexity Low_complexity 1 28 0 1 894 306 0 0 0 chr6 40593491 40593525 -108923512 + (T)n Simple_repeat Simple_repeat 1 34 0 1 894 495 276 24 31 chr6 40594217 40594344 -108922693 + RSINE1 SINE B4 1 126 -39 1 894 235 174 28 42 chr6 40594996 40595068 -108921969 + CT-rich Low_complexity Low_complexity 4 74 0 1 894 1077 56 0 20 chr6 40595254 40595392 -108921645 + B1_Mus1 SINE Alu 6 142 -6 1 894 189 0 0 0 chr6 40595392 40595413 -108921624 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1 894 242 222 36 24 chr6 40595928 40596011 -108921026 - Lx7 LINE L1 -858 6838 6755 1 894 1419 51 6 17 chr6 40597444 40597624 -108919413 - B2_Mm1t SINE B2 -14 179 2 1 894 680 258 25 19 chr6 40597739 40597901 -108919136 - RSINE1 SINE B4 0 165 3 1 894 530 230 47 8 chr6 40598293 40598420 -108918617 - MLT1A1 LTR MaLR 0 408 277 1 894 574 326 98 19 chr6 40598629 40598895 -108918142 - B4A SINE B4 0 292 6 1 894 401 316 63 41 chr6 40599573 40599794 -108917243 - MER2 DNA MER2_type -33 312 87 1 894 2915 47 3 3 chr6 40599884 40600249 -108916788 - L1Md_F3 LINE L1 -16 6568 6204 1 894 254 325 13 0 chr6 40600634 40600711 -108916326 + ID4_ SINE ID 4 81 -2 1 894 617 346 129 45 chr6 40601161 40601609 -108915428 - MLT1F2 LTR MaLR -2 558 73 1 894 958 274 9 24 chr6 40602961 40603294 -108913743 - Lx6 LINE L1 -26 7434 7107 1 894 2632 65 8 3 chr6 40603723 40604076 -108912961 + L1_Mus2 LINE L1 6211 6565 -1 1 894 241 250 14 54 chr6 40604081 40604123 -108912914 + ORR1B1-int LTR MaLR 613 648 -861 1 894 1041 110 0 0 chr6 40604123 40604269 -108912768 + B1_Mus1 SINE Alu 3 148 0 1 894 279 0 0 0 chr6 40604273 40604304 -108912733 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 894 2522 109 30 0 chr6 40605378 40605781 -108911256 - Lx4A LINE L1 -838 6220 5806 1 894 870 173 126 3 chr6 40605777 40605976 -108911061 + Lx4A LINE L1 6764 6951 -107 1 894 353 302 60 70 chr6 40606604 40606789 -108910248 + MIR SINE MIR 6 188 -74 1 894 188 343 57 0 chr6 40606787 40606892 -108910145 + MIR SINE MIR 137 247 -15 1 894 242 197 299 13 chr6 40607969 40608046 -108908991 + Charlie10 DNA MER1_type 1 99 -2723 1 894 21 36 0 0 chr6 40608424 40608452 -108908585 + AT_rich Low_complexity Low_complexity 1 28 0 1 894 675 279 94 53 chr6 40608617 40608882 -108908155 + B4A SINE B4 4 279 -13 1 894 639 120 17 8 chr6 40609438 40609556 -108907481 + (TA)n Simple_repeat Simple_repeat 1 119 0 1 894 24 0 0 0 chr6 40613149 40613173 -108903864 + AT_rich Low_complexity Low_complexity 1 24 0 1 894 2923 63 0 5 chr6 40615020 40615401 -108901636 + L1Md_F2 LINE L1 6192 6570 -12 1 894 252 0 0 0 chr6 40615468 40615496 -108901541 + (A)n Simple_repeat Simple_repeat 1 28 0 1 894 535 290 37 70 chr6 40615522 40615707 -108901330 + B3A SINE B2 5 184 -32 1 894 444 93 0 0 chr6 40615707 40615782 -108901255 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 894 478 290 37 70 chr6 40615782 40615811 -108901226 + B3 SINE B2 185 212 -4 1 894 298 247 39 0 chr6 40616275 40616352 -108900685 - ID4 SINE ID -2 81 2 1 894 197 232 0 44 chr6 40617436 40617481 -108899556 - L2c LINE L2 -8 3379 3337 1 894 267 297 41 61 chr6 40618588 40618735 -108898302 + B4A SINE B4 78 221 -71 1 894 709 181 4 1 chr6 40618611 40618741 -108898296 + B1_Mus1 SINE Alu 15 148 0 1 894 279 0 0 0 chr6 40618754 40618785 -108898252 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 894 391 269 18 18 chr6 40618826 40618936 -108898101 + PB1D10 SINE Alu 1 110 -7 1 894 27 0 0 0 chr6 40619008 40619035 -108898002 + AT_rich Low_complexity Low_complexity 1 27 0 1 894 932 118 0 0 chr6 40619243 40619378 -108897659 + B2_Mm2 SINE B2 1 135 -60 1 894 288 0 0 0 chr6 40619992 40620024 -108897013 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 894 201 74 0 0 chr6 40620463 40620490 -108896547 + (T)n Simple_repeat Simple_repeat 1 27 0 1 894 248 328 0 0 chr6 40620543 40620607 -108896430 - ID4_ SINE ID -17 66 3 1 894 274 331 76 8 chr6 40620623 40620754 -108896283 - B1F SINE Alu -8 141 2 1 894 227 359 46 19 chr6 40622764 40622872 -108894165 + MER81 DNA AcHobo 1 111 -3 1 894 371 307 18 0 chr6 40623040 40623154 -108893883 + Lx7 LINE L1 7193 7308 -388 1 894 308 241 6 54 chr6 40623158 40623325 -108893712 + T-rich Low_complexity Low_complexity 3 161 0 1 894 50 0 0 0 chr6 40623399 40623449 -108893588 + AT_rich Low_complexity Low_complexity 1 50 0 1 894 1563 160 55 10 chr6 40623575 40623865 -108893172 - Lx4B LINE L1 -4 7054 6752 1 894 2366 134 10 3 chr6 40623869 40624258 -108892779 + Lx4B LINE L1 6391 6782 -276 1 894 221 0 0 33 chr6 40624449 40624479 -108892558 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 894 292 119 17 17 chr6 40625855 40625915 -108891122 + CT-rich Low_complexity Low_complexity 5 64 0 1 894 330 324 115 37 chr6 40626168 40626463 -108890574 - L1ME2 LINE L1 -150 6014 5697 1 894 842 177 13 0 chr6 40626789 40626947 -108890090 - Lx4A LINE L1 -87 6971 6812 1 894 972 53 0 0 chr6 40627924 40628055 -108888982 + (GA)n Simple_repeat Simple_repeat 2 132 0 1 894 22 0 0 0 chr6 40628068 40628090 -108888947 + AT_rich Low_complexity Low_complexity 1 22 0 1 894 767 194 148 6 chr6 40628815 40628991 -108888046 + B3 SINE B2 6 206 -10 1 894 184 59 59 0 chr6 40631740 40631774 -108885263 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 894 1080 36 7 14 chr6 40631774 40631913 -108885124 - B1_Mus1 SINE Alu 0 148 11 1 895 226 143 0 31 chr6 40633069 40633134 -108883903 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 1 895 337 220 79 6 chr6 40633199 40633339 -108883698 - ORR1D2 LTR MaLR -128 239 1 1 895 794 86 0 8 chr6 40634133 40634250 -108882787 + (TCC)n Simple_repeat Simple_repeat 3 118 0 1 895 219 36 0 0 chr6 40635239 40635267 -108881770 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 1 895 243 336 22 7 chr6 40635827 40635962 -108881075 + (TGG)n Simple_repeat Simple_repeat 3 139 0 1 895 240 352 34 40 chr6 40636145 40636293 -108880744 - MIR SINE MIR -72 190 44 1 895 1862 108 23 17 chr6 40637101 40637402 -108879635 - L1_Mus4 LINE L1 -2 6634 6332 1 895 244 232 73 0 chr6 40638984 40639066 -108877971 + Lx5 LINE L1 6925 7012 -38 1 895 258 164 0 0 chr6 40639505 40639560 -108877477 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 895 387 0 0 0 chr6 40640571 40640614 -108876423 + (CAT)n Simple_repeat Simple_repeat 1 43 0 1 895 243 0 0 0 chr6 40640614 40640641 -108876396 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 895 1215 12 0 34 chr6 40640641 40640815 -108876222 + (CA)n Simple_repeat Simple_repeat 1 169 0 2 895 185 65 0 31 chr6 40641814 40641846 -108875191 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 2 895 216 273 106 0 chr6 40643934 40644000 -108873037 + B1_Mm SINE Alu 61 133 -14 2 895 22 0 0 0 chr6 40644301 40644323 -108872714 + AT_rich Low_complexity Low_complexity 1 22 0 2 895 989 114 0 0 chr6 40645189 40645347 -108871690 + L1_Mus4 LINE L1 6473 6630 -6 2 895 294 272 125 102 chr6 40646477 40646653 -108870384 + MER20 DNA MER1_type 34 213 -6 2 895 1842 159 23 9 chr6 40647178 40647526 -108869511 - Lx4B LINE L1 -62 6996 6644 2 895 387 0 0 0 chr6 40648088 40648131 -108868906 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 895 675 0 0 0 chr6 40649899 40649974 -108867063 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 2 895 6485 187 36 21 chr6 40650660 40652450 -108864587 - Lx5 LINE L1 -3 7047 5213 2 895 277 223 31 31 chr6 40652446 40652543 -108864494 + L1M3 LINE L1 5021 5117 -1023 2 895 344 323 61 13 chr6 40652547 40652776 -108864261 + L1M3 LINE L1 5546 5785 -506 2 895 3099 52 18 0 chr6 40653638 40654024 -108863013 + L1Md_F3 LINE L1 6175 6567 -17 2 895 336 83 0 0 chr6 40654035 40654083 -108862954 + (CAAA)n Simple_repeat Simple_repeat 3 50 0 2 895 189 0 0 0 chr6 40654086 40654107 -108862930 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 895 598 293 19 24 chr6 40655030 40655240 -108861797 + B3 SINE B2 1 209 -7 2 895 307 98 16 16 chr6 40655463 40655525 -108861512 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 2 895 188 344 106 30 chr6 40657667 40657799 -108859238 + L2b LINE L2 3224 3365 -10 2 895 288 303 63 11 chr6 40658696 40658886 -108858151 - L1MA6 LINE L1 -4 6296 6097 2 895 1080 249 78 42 chr6 40659230 40659587 -108857450 - ORR1D2 LTR MaLR 0 370 1 2 895 2295 58 0 7 chr6 40659631 40659926 -108857111 - L1Md_F2 LINE L1 -14 6568 6276 2 895 1493 202 79 139 chr6 40661458 40662017 -108855020 - RLTR11A2 LTR ERVK 0 527 3 2 895 225 0 0 0 chr6 40662328 40662353 -108854684 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 895 274 283 22 50 chr6 40662534 40662716 -108854321 + (ATGGTG)n Simple_repeat Simple_repeat 4 180 0 2 895 239 279 0 0 chr6 40662811 40662941 -108854096 + (ATGGTG)n Simple_repeat Simple_repeat 1 130 0 2 895 269 340 28 0 chr6 40663084 40663190 -108853847 - MIR SINE MIR -98 164 56 2 895 277 24 48 0 chr6 40663232 40663274 -108853763 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 895 231 286 116 23 chr6 40665638 40665724 -108851313 - MIRb SINE MIR -138 130 37 2 895 38744 17 2 6 chr6 40666587 40673008 -108844029 - L1Md_A LINE L1 0 6582 189 2 895 1677 20 0 0 chr6 40673004 40673208 -108843829 + L1_Mm LINE L1 3407 3610 -2273 2 895 3942 20 0 0 chr6 40673201 40673727 -108843310 - L1Md_A LINE L1 -646 5936 5411 2 895 25 31 0 0 chr6 40674763 40674795 -108842242 + AT_rich Low_complexity Low_complexity 1 32 0 2 895 592 227 127 107 chr6 40674871 40675068 -108841969 - B3 SINE B2 -14 202 2 2 895 3497 81 2 0 chr6 40676879 40677335 -108839702 - L1_Mus1 LINE L1 0 6567 6111 2 895 4339 76 2 0 chr6 40677335 40677964 -108839073 + L1_Mm LINE L1 1586 2215 -3668 2 895 378 0 0 0 chr6 40679164 40679206 -108837831 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 895 594 0 0 0 chr6 40680000 40680066 -108836971 + (TTATA)n Simple_repeat Simple_repeat 5 70 0 2 895 303 138 47 12 chr6 40682024 40682091 -108834946 + B4A SINE B4 164 232 -60 2 895 378 0 0 0 chr6 40682152 40682194 -108834843 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 895 575 27 14 0 chr6 40682208 40682281 -108834756 + (GA)n Simple_repeat Simple_repeat 1 74 0 2 895 186 191 0 0 chr6 40682310 40682352 -108834685 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 895 2060 277 117 82 chr6 40682397 40683675 -108833362 - RMER12 LTR ERVK 0 1322 1 2 895 1376 165 0 13 chr6 40683684 40683911 -108833126 + URR1B DNA MER1_type 2 225 0 2 895 1719 230 80 53 chr6 40684075 40684322 -108832715 + Lx7 LINE L1 7131 7373 -323 2 895 317 62 21 0 chr6 40684322 40684370 -108832667 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 895 1719 230 80 53 chr6 40684370 40684528 -108832509 + Lx7 LINE L1 7374 7550 -146 2 895 507 45 0 0 chr6 40684528 40684594 -108832443 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 2 895 1719 230 80 53 chr6 40684594 40684738 -108832299 + Lx7 LINE L1 7551 7695 -1 2 895 465 19 0 0 chr6 40685548 40685602 -108831435 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 895 1809 179 5 38 chr6 40687787 40688158 -108828879 - RLTR15 LTR ERVK 0 359 1 2 895 22 0 0 0 chr6 40688349 40688371 -108828666 + AT_rich Low_complexity Low_complexity 1 22 0 2 895 375 289 61 49 chr6 40688676 40689042 -108827995 + L1M2 LINE L1 5134 5475 -837 2 895 1163 81 0 0 chr6 40689042 40689190 -108827847 + B1_Mus1 SINE Alu 1 148 0 2 895 235 302 89 98 chr6 40689190 40689476 -108827561 + L1M2 LINE L1 5476 5784 -528 2 895 435 52 0 0 chr6 40690506 40690564 -108826473 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 895 457 142 38 31 chr6 40690617 40690777 -108826260 + (TA)n Simple_repeat Simple_repeat 1 161 0 2 895 530 186 0 33 chr6 40690898 40691048 -108825989 + (CA)n Simple_repeat Simple_repeat 2 146 0 2 895 326 176 29 29 chr6 40691049 40691119 -108825918 + HAL1-3A_ME LINE L1 1978 2047 -811 2 895 799 286 101 125 chr6 40692724 40692795 -108824242 - MTE2b LTR MaLR -20 359 297 2 895 4546 91 2 3 chr6 40692795 40693423 -108823614 + L1_Mus2 LINE L1 5940 6566 0 2 895 799 286 101 125 chr6 40693423 40693453 -108823584 - MTE2b LTR MaLR -83 296 284 2 895 1130 137 16 11 chr6 40693453 40693637 -108823400 + B2_Mm2 SINE B2 1 185 -10 2 895 799 286 101 125 chr6 40693637 40693902 -108823135 - MTE2b LTR MaLR -96 283 1 2 895 2038 106 0 35 chr6 40696649 40696962 -108820075 - L1_Mus4 LINE L1 -8 6628 6327 2 895 21 57 0 0 chr6 40697630 40697665 -108819372 + AT_rich Low_complexity Low_complexity 1 35 0 2 895 185 35 0 65 chr6 40697818 40697849 -108819188 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 895 241 374 6 23 chr6 40698282 40698457 -108818580 + (ATGGTG)n Simple_repeat Simple_repeat 3 174 0 2 895 224 343 86 18 chr6 40698543 40698729 -108818308 - MIRc SINE MIR -52 216 15 2 895 39 22 0 0 chr6 40698772 40698818 -108818219 + AT_rich Low_complexity Low_complexity 1 46 0 2 895 796 105 7 15 chr6 40702671 40702806 -108814231 + (TTCC)n Simple_repeat Simple_repeat 4 137 0 2 895 450 0 0 0 chr6 40704239 40704289 -108812748 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 895 492 48 0 0 chr6 40705666 40705729 -108811308 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 895 1342 154 5 5 chr6 40706581 40706803 -108810234 - URR1B DNA MER1_type -3 222 1 2 895 453 136 231 67 chr6 40708102 40708188 -108808849 - RMER17B LTR ERVK -499 459 382 2 895 659 75 11 0 chr6 40708188 40708282 -108808755 + (GA)n Simple_repeat Simple_repeat 1 95 0 2 895 453 136 231 67 chr6 40708282 40708329 -108808708 - RMER17B LTR ERVK -577 381 305 2 895 4252 43 0 0 chr6 40708359 40708867 -108808170 - L1Md_F2 LINE L1 0 6582 6075 2 895 200 79 0 50 chr6 40710805 40710845 -108806192 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 2 895 1360 158 5 0 chr6 40711456 40711678 -108805359 - URR1B DNA MER1_type -1 224 2 2 895 354 307 72 24 chr6 40712072 40712239 -108804798 + MER96 DNA hAT 1 175 0 2 895 656 304 14 28 chr6 40712443 40712654 -108804383 + 7SLRNA srpRNA srpRNA 2 208 -106 2 895 268 285 141 34 chr6 40714530 40714679 -108802358 + MER3 DNA MER1_type 45 209 0 2 895 662 101 30 15 chr6 40716359 40716490 -108800547 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 2 895 240 103 52 0 chr6 40716849 40716907 -108800130 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2 895 351 0 0 0 chr6 40717592 40717631 -108799406 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 895 189 0 0 0 chr6 40717631 40717651 -108799386 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 895 264 185 0 0 chr6 40718532 40718586 -108798451 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 895 495 286 59 15 chr6 40719453 40719588 -108797449 + RSINE1 SINE B4 3 143 -22 2 895 207 108 0 26 chr6 40719600 40719638 -108797399 + (TAAAAA)n Simple_repeat Simple_repeat 5 41 0 2 895 413 256 50 0 chr6 40720295 40720455 -108796582 - L1MA8 LINE L1 -20 6271 6104 2 895 2371 251 49 58 chr6 40720824 40721544 -108795493 - RMER1C Other Other -140 1202 490 2 895 590 225 0 0 chr6 40721819 40721930 -108795107 - RMER1B Other Other -360 706 596 2 895 452 194 106 21 chr6 40721983 40722164 -108794873 - ORR1D1 LTR MaLR 0 374 66 2 895 2571 41 0 0 chr6 40722381 40722697 -108794340 - L1Md_A LINE L1 0 6582 6267 2 895 2741 31 0 0 chr6 40722697 40723017 -108794020 + L1Md_T LINE L1 5934 6253 -329 2 895 597 158 0 0 chr6 40723017 40723118 -108793919 - ORR1D1 LTR MaLR -273 101 1 2 895 275 224 163 27 chr6 40723451 40723598 -108793439 - Charlie1 DNA MER1_type -169 2612 2446 2 895 380 354 99 79 chr6 40723662 40724005 -108793032 - ORR1E LTR MaLR -9 350 1 2 895 230 329 13 0 chr6 40724012 40724091 -108792946 - Charlie1 DNA MER1_type -2667 114 35 2 895 1024 291 93 13 chr6 40724268 40724568 -108792469 - MTE2b LTR MaLR 0 379 56 2 895 8353 78 17 63 chr6 40725323 40726644 -108790393 - Lx3_Mus LINE L1 -5 7004 5745 2 895 6725 69 10 1 chr6 40726644 40727561 -108789476 + L1_Mur1 LINE L1 3995 4919 -967 2 895 720 271 19 56 chr6 40727715 40727853 -108789184 + B3 SINE B2 4 145 -71 2 895 1143 186 32 18 chr6 40727853 40728072 -108788965 + URR1B DNA MER1_type 1 222 -3 2 895 720 271 19 56 chr6 40728072 40728148 -108788889 + B3 SINE B2 146 210 -6 2 895 25 31 0 0 chr6 40728782 40728814 -108788223 + AT_rich Low_complexity Low_complexity 1 32 0 2 895 229 172 0 30 chr6 40728924 40728990 -108788047 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 2 895 243 62 0 0 chr6 40729258 40729290 -108787747 + URR1B DNA MER1_type 191 222 -3 2 895 281 292 14 0 chr6 40729290 40729362 -108787675 + B3 SINE B2 134 206 -10 2 895 501 352 59 40 chr6 40729831 40730103 -108786934 - B4A SINE B4 -14 278 2 2 895 22 70 0 0 chr6 40730738 40730781 -108786256 + AT_rich Low_complexity Low_complexity 1 43 0 3 895 570 335 12 0 chr6 40731352 40731525 -108785512 - ID_B1 SINE B4 -8 216 42 3 895 195 42 0 0 chr6 40732664 40732688 -108784349 + (A)n Simple_repeat Simple_repeat 1 24 0 3 895 798 119 17 0 chr6 40732692 40732810 -108784227 + PB1D9 SINE Alu 1 120 0 3 895 827 270 107 21 chr6 40732868 40733110 -108783927 - ORR1D2 LTR MaLR 0 370 108 3 895 1156 19 12 38 chr6 40733254 40733414 -108783623 + L1Md_F3 LINE L1 6428 6583 -1 3 895 375 78 0 0 chr6 40733989 40734040 -108782997 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 3 895 738 288 21 38 chr6 40735354 40735589 -108781448 + B4A SINE B4 2 232 -60 3 895 192 308 19 0 chr6 40735925 40735977 -108781060 - MIRm SINE MIR -104 172 120 3 895 384 77 0 0 chr6 40736570 40736622 -108780415 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 895 348 332 124 53 chr6 40736627 40736851 -108780186 - B4A SINE B4 -12 280 40 3 895 31 58 0 0 chr6 40737596 40737648 -108779389 + AT_rich Low_complexity Low_complexity 1 52 0 3 895 229 308 80 80 chr6 40737654 40737767 -108779270 + B1F SINE Alu 37 149 0 3 895 262 0 53 0 chr6 40737768 40737806 -108779231 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 3 895 780 262 134 41 chr6 40738287 40739018 -108778019 - L1MA6 LINE L1 -467 5833 4980 3 895 198 0 0 0 chr6 40739030 40739052 -108777985 + (TC)n Simple_repeat Simple_repeat 1 22 0 3 895 504 0 0 0 chr6 40739066 40739122 -108777915 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 895 563 248 21 35 chr6 40739421 40739563 -108777474 + B1F SINE Alu 1 140 -9 3 895 370 296 74 63 chr6 40739594 40739973 -108777064 + L1MB5 LINE L1 4908 5290 -856 3 895 1195 336 59 41 chr6 40739972 40740686 -108776351 + Lx7 LINE L1 6733 7470 -3 3 895 522 258 212 4 chr6 40740891 40741160 -108775877 + L1MB5 LINE L1 5513 5837 -337 3 895 687 25 0 0 chr6 40741211 40741292 -108775745 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 3 895 1259 110 16 0 chr6 40742394 40742576 -108774461 - B2_Mm2 SINE B2 -9 186 2 3 895 29 0 0 0 chr6 40742702 40742731 -108774306 + AT_rich Low_complexity Low_complexity 1 29 0 3 895 751 207 40 29 chr6 40743017 40743191 -108773846 - Lx4A LINE L1 0 7058 6883 3 895 2464 113 5 28 chr6 40743159 40743549 -108773488 - Lx4A LINE L1 -804 6254 5874 3 895 301 286 162 48 chr6 40744324 40744596 -108772441 - L1M5 LINE L1 -1649 4497 4195 3 895 188 298 195 34 chr6 40745974 40746092 -108770945 + L2b LINE L2 3177 3313 -62 3 895 344 292 8 34 chr6 40748240 40748357 -108768680 + PB1D10 SINE Alu 1 114 -3 3 895 1381 111 0 9 chr6 40748357 40748576 -108768461 + L1Md_F2 LINE L1 6366 6582 0 3 895 368 333 44 22 chr6 40748989 40749124 -108767913 - B1F1 SINE Alu -2 147 10 3 895 25 51 0 0 chr6 40749136 40749175 -108767862 + AT_rich Low_complexity Low_complexity 1 39 0 3 895 312 202 110 10 chr6 40749378 40749478 -108767559 - Lx6 LINE L1 -2 7458 7349 3 895 330 265 87 19 chr6 40749480 40749584 -108767453 - Lx6 LINE L1 -56 7404 7294 3 895 22 0 0 0 chr6 40749945 40749967 -108767070 + AT_rich Low_complexity Low_complexity 1 22 0 3 895 226 269 99 37 chr6 40750185 40750266 -108766771 - MER70B LTR ERVL -425 153 68 3 895 211 299 141 20 chr6 40750762 40750861 -108766176 - MIR3 SINE MIR -15 193 83 3 895 272 351 0 0 chr6 40751336 40751410 -108765627 + tRNA-Ala-GCY_ tRNA tRNA 2 75 0 3 895 342 0 0 0 chr6 40751411 40751449 -108765588 + (CAAAA)n Simple_repeat Simple_repeat 5 42 0 3 895 1208 293 51 56 chr6 40751454 40751827 -108765210 + MTE2a LTR MaLR 1 371 -8 3 895 1005 158 152 5 chr6 40751961 40752158 -108764879 - URR1A DNA MER1_type 0 226 1 3 895 181 311 66 0 chr6 40752731 40752792 -108764245 + MIR SINE MIR 37 101 -107 3 895 240 304 161 25 chr6 40753462 40753580 -108763457 - MIRc SINE MIR -115 153 20 3 895 206 316 0 95 chr6 40754091 40754175 -108762862 - L2c LINE L2 -12 3375 3300 3 895 23 0 0 0 chr6 40756141 40756164 -108760873 + AT_rich Low_complexity Low_complexity 1 23 0 3 895 23 0 0 0 chr6 40756528 40756551 -108760486 + AT_rich Low_complexity Low_complexity 1 23 0 3 895 628 281 115 45 chr6 40756551 40756994 -108760043 - Lx9 LINE L1 -2 7642 7169 3 895 26784 122 49 1 chr6 40757028 40762966 -108754071 - L1_Mus3 LINE L1 0 6638 400 3 895 393 75 0 0 chr6 40763057 40763110 -108753927 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 896 230 377 54 54 chr6 40765129 40765258 -108751779 - MamGypLTR1d LTR Gypsy -23 790 662 3 896 22 35 0 0 chr6 40766239 40766268 -108750769 + AT_rich Low_complexity Low_complexity 1 29 0 3 896 556 176 12 0 chr6 40766359 40766524 -108750513 + (CA)n Simple_repeat Simple_repeat 2 168 0 3 896 394 269 142 50 chr6 40766525 40766648 -108750389 + B3A SINE B2 43 182 -16 3 896 432 0 0 0 chr6 40766648 40766696 -108750341 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 896 324 269 142 50 chr6 40766696 40766713 -108750324 + B3 SINE B2 178 195 -21 3 896 6292 30 1 0 chr6 40767552 40768294 -108748743 + L1Md_T LINE L1 5839 6581 -1 3 896 198 71 0 0 chr6 40768879 40768907 -108748130 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 896 211 28 56 0 chr6 40769029 40769065 -108747972 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 896 451 300 15 37 chr6 40770383 40770518 -108746519 + B1F2 SINE Alu 1 132 -17 3 896 25 31 0 0 chr6 40770606 40770638 -108746399 + AT_rich Low_complexity Low_complexity 1 32 0 3 896 549 0 0 0 chr6 40771119 40771180 -108745857 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 896 1584 220 32 75 chr6 40771331 40771769 -108745268 + MTD LTR MaLR 1 419 0 3 896 258 321 49 54 chr6 40772193 40772397 -108744640 - Charlie5 DNA MER1_type -106 2518 2316 3 896 333 0 0 0 chr6 40774711 40774748 -108742289 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 896 461 241 0 9 chr6 40774967 40775076 -108741961 - MLT1A1 LTR MaLR -2 406 299 3 896 374 330 0 9 chr6 40775111 40775221 -108741816 - MLT1A1 LTR MaLR -254 111 3 3 896 285 346 80 94 chr6 40775372 40775735 -108741302 - ORR1E LTR MaLR -1 358 1 3 896 260 319 115 64 chr6 40776377 40776595 -108740442 + MIR SINE MIR 2 230 -32 3 896 275 347 156 17 chr6 40777352 40777525 -108739512 - L2c LINE L2 -15 3372 3176 3 896 446 260 90 19 chr6 40777773 40777985 -108739052 - L1MD LINE L1 -673 5686 5460 3 896 559 247 93 53 chr6 40778175 40778530 -108738507 - L1MD LINE L1 -906 5240 4872 3 896 374 337 73 25 chr6 40778621 40778761 -108738276 + MIRb SINE MIR 55 205 -63 3 896 528 16 0 0 chr6 40778761 40778822 -108738215 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 896 374 337 73 25 chr6 40778822 40778885 -108738152 + MIRb SINE MIR 206 268 0 3 896 663 57 0 0 chr6 40778914 40779002 -108738035 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 896 1820 56 56 0 chr6 40780325 40780558 -108736479 - L1_Mus1 LINE L1 0 6567 6322 3 896 433 306 89 27 chr6 40781117 40781342 -108735695 - MLT1C LTR MaLR -223 244 6 3 896 1038 211 26 69 chr6 40781724 40782029 -108735008 - Lx6 LINE L1 -26 7434 7143 3 896 491 229 67 17 chr6 40782118 40782238 -108734799 + B1_Mur1 SINE Alu 21 146 -3 3 896 195 318 80 49 chr6 40782241 40782403 -108734634 - MIRc SINE MIR -94 174 8 3 896 190 373 15 0 chr6 40783345 40783412 -108733625 - L2c LINE L2 -49 3338 3271 3 896 1877 170 11 46 chr6 40784349 40784719 -108732318 - RLTR15 LTR ERVK 0 359 3 3 896 3556 27 9 0 chr6 40785148 40785588 -108731449 - L1Md_F3 LINE L1 -239 6345 5902 3 896 1854 41 41 0 chr6 40785588 40785897 -108731140 + L1Md_F3 LINE L1 6331 6584 0 3 896 957 36 14 21 chr6 40785908 40786048 -108730989 + L1_Mus3 LINE L1 6495 6633 -5 3 896 24 0 0 0 chr6 40786841 40786865 -108730172 + AT_rich Low_complexity Low_complexity 1 24 0 3 896 279 0 0 0 chr6 40788090 40788121 -108728916 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 896 940 246 9 4 chr6 40789031 40789264 -108727773 - Lx9 LINE L1 -346 7298 7065 3 896 260 129 0 16 chr6 40789262 40789325 -108727712 + Lx9 LINE L1 7575 7636 -8 3 896 2209 127 0 3 chr6 40789937 40790268 -108726769 - Lx2 LINE L1 0 6997 6668 3 896 22 0 0 0 chr6 40790548 40790570 -108726467 + AT_rich Low_complexity Low_complexity 1 22 0 3 896 1215 173 23 0 chr6 40793821 40794035 -108723002 - URR1B DNA MER1_type 0 225 7 3 896 450 65 0 0 chr6 40795287 40795349 -108721688 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 3 896 28 0 0 0 chr6 40795363 40795391 -108721646 + AT_rich Low_complexity Low_complexity 1 28 0 3 896 24 0 0 0 chr6 40796052 40796076 -108720961 + AT_rich Low_complexity Low_complexity 1 24 0 3 896 315 24 0 0 chr6 40796347 40796389 -108720648 - B1_Mm SINE Alu 0 147 106 3 896 561 88 0 0 chr6 40796589 40796669 -108720368 + (TCCCC)n Simple_repeat Simple_repeat 1 80 0 3 896 270 0 0 0 chr6 40796938 40796968 -108720069 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 896 477 293 167 23 chr6 40796969 40797235 -108719802 - MER67C LTR ERV1 -306 405 102 3 896 264 40 39 20 chr6 40797235 40797286 -108719751 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 3 896 203 229 0 62 chr6 40798315 40798380 -108718657 - L2 LINE L2 -911 2508 2448 3 896 21 0 0 0 chr6 40798407 40798428 -108718609 + AT_rich Low_complexity Low_complexity 1 21 0 3 896 6372 57 1 7 chr6 40799453 40800303 -108716734 - L1_Mus1 LINE L1 0 6567 5723 3 896 4368 72 0 5 chr6 40801088 40801659 -108715378 - L1Md_F2 LINE L1 -2 6580 6013 3 896 405 0 0 0 chr6 40801863 40801908 -108715129 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 896 312 48 0 0 chr6 40802239 40802281 -108714756 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 896 228 200 0 0 chr6 40802283 40802348 -108714689 + GA-rich Low_complexity Low_complexity 1 65 0 3 896 688 266 34 21 chr6 40802684 40802866 -108714171 - RMER17C LTR ERVK 0 410 223 4 896 543 31 0 0 chr6 40802866 40802931 -108714106 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 896 688 227 26 9 chr6 40802931 40803057 -108713980 - RMER17C LTR ERVK -188 222 1 4 896 335 111 0 0 chr6 40803111 40803156 -108713881 - RLTR16 LTR ERVK -458 47 3 4 896 234 0 0 0 chr6 40803865 40803891 -108713146 + (A)n Simple_repeat Simple_repeat 1 26 0 4 896 791 254 52 33 chr6 40804272 40804715 -108712322 - RMER17C LTR ERVK -2 408 22 4 896 231 36 0 0 chr6 40805006 40805034 -108712003 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 896 27 0 0 0 chr6 40805676 40805703 -108711334 + AT_rich Low_complexity Low_complexity 1 27 0 4 896 464 300 74 37 chr6 40805713 40805848 -108711189 - RSINE1 SINE B4 -17 148 9 4 896 287 188 241 35 chr6 40808124 40808240 -108708797 - Lx9 LINE L1 -1094 6550 6411 4 896 2591 77 116 3 chr6 40808275 40808653 -108708384 - BGLII LTR ERVK 0 421 1 4 896 303 28 0 0 chr6 40808665 40808701 -108708336 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 896 941 236 15 0 chr6 40808712 40808911 -108708126 + MTD LTR MaLR 3 204 -215 4 896 188 34 0 33 chr6 40809105 40809135 -108707902 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 896 275 254 0 0 chr6 40809827 40809886 -108707151 - RMER6B LTR ERVK -35 426 368 4 896 244 141 69 23 chr6 40810417 40810504 -108706533 - Lx3_Mus LINE L1 -2 7007 6917 4 896 593 131 28 0 chr6 40810648 40810755 -108706282 - Lx2 LINE L1 -268 6729 6620 4 896 559 328 25 97 chr6 40810803 40810833 -108706204 + B3A SINE B2 1 30 -168 4 896 477 100 25 76 chr6 40810833 40810952 -108706085 + L1_Mus3 LINE L1 6523 6635 -3 4 896 559 328 25 97 chr6 40810952 40811004 -108706033 + B3A SINE B2 31 67 -131 4 896 5342 63 27 6 chr6 40811004 40811705 -108705332 - L1_Mus2 LINE L1 0 6566 5851 4 896 559 329 26 96 chr6 40811705 40811849 -108705188 + B3A SINE B2 68 213 -3 4 896 275 302 73 49 chr6 40812359 40812614 -108704423 + MER33 DNA MER1_type 12 309 -15 4 896 642 221 24 0 chr6 40812734 40812861 -108704176 - B1_Mur4 SINE Alu -20 130 1 4 896 716 291 25 0 chr6 40813336 40813494 -108703543 - B3A SINE B2 -36 162 1 4 896 280 359 88 44 chr6 40813497 40813634 -108703403 - ID_B1 SINE B4 -4 220 78 4 896 455 243 23 159 chr6 40813758 40813978 -108703059 - RLTR19 LTR ERVK -2 494 305 4 896 1095 126 20 50 chr6 40813978 40814178 -108702859 - RLTR19 LTR ERVK -297 202 9 4 896 260 125 104 0 chr6 40814699 40814747 -108702290 - MT2A LTR ERVL -480 53 1 4 896 946 153 151 15 chr6 40819408 40819607 -108697430 - URR1A DNA MER1_type 0 226 1 4 896 999 287 78 31 chr6 40820977 40821401 -108695636 + Charlie1b DNA MER1_type 7 450 -73 4 896 915 75 15 29 chr6 40821422 40821559 -108695478 - RLTR15 LTR ERVK 0 359 225 4 896 1238 137 38 29 chr6 40821557 40821767 -108695270 - RMER19B LTR ERVK -690 212 1 4 896 333 200 0 0 chr6 40821805 40821875 -108695162 - RLTR18-int LTR ERVK -566 4795 4726 4 896 207 98 73 0 chr6 40821876 40821917 -108695120 + CT-rich Low_complexity Low_complexity 6 49 0 4 896 1338 65 0 0 chr6 40821919 40822274 -108694763 + (TCC)n Simple_repeat Simple_repeat 1 355 0 4 896 198 0 0 0 chr6 40822274 40822296 -108694741 + (TTC)n Simple_repeat Simple_repeat 2 23 0 4 896 1135 182 107 35 chr6 40822298 40822617 -108694420 - MYSERV6-int LTR ERVK -2211 6748 6407 4 896 1155 160 24 48 chr6 40822687 40823051 -108693986 + Lx3C LINE L1 6659 6975 -1 4 896 292 333 31 0 chr6 40823102 40823198 -108693839 - B1_Mur4 SINE Alu -12 138 40 4 896 27 0 0 0 chr6 40823259 40823286 -108693751 + AT_rich Low_complexity Low_complexity 1 27 0 4 896 3815 126 62 14 chr6 40823286 40823880 -108693157 - Lx4A LINE L1 0 7058 6436 4 896 3798 130 65 14 chr6 40823880 40824484 -108692553 + Lx4A LINE L1 5673 6312 -746 4 896 1650 152 56 61 chr6 40824484 40824896 -108692141 - RMER17C LTR ERVK 0 410 1 4 896 3798 130 65 14 chr6 40824896 40824985 -108692052 + Lx4A LINE L1 6313 6401 -657 4 896 287 25 25 0 chr6 40825302 40825342 -108691695 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 896 189 121 0 0 chr6 40825438 40825471 -108691566 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 896 1810 152 39 6 chr6 40825596 40825908 -108691129 - RLTR15 LTR ERVK -37 322 1 4 896 285 51 0 0 chr6 40826101 40826140 -108690897 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 896 1147 69 7 0 chr6 40826142 40826287 -108690750 - B1_Mus1 SINE Alu -2 146 1 4 896 206 305 0 58 chr6 40826485 40826572 -108690465 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 4 896 586 319 11 40 chr6 40826579 40826755 -108690282 - B4A SINE B4 -14 278 108 4 896 859 154 0 14 chr6 40829730 40829868 -108687169 + B1_Mur3 SINE Alu 9 144 -5 4 896 415 172 20 10 chr6 40829871 40829971 -108687066 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 4 896 495 0 0 0 chr6 40830805 40830860 -108686177 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 4 896 399 340 73 10 chr6 40831474 40831679 -108685358 - MIR SINE MIR -19 243 26 4 896 348 294 32 71 chr6 40833005 40833159 -108683878 - Lx8 LINE L1 -349 7124 6977 4 896 1361 155 0 4 chr6 40836483 40836710 -108680327 + URR1A DNA MER1_type 1 226 0 4 896 290 209 181 52 chr6 40839230 40839346 -108677691 - MER67C LTR ERV1 -511 200 70 4 896 1321 243 31 49 chr6 40839371 40839821 -108677216 - RMER10A LTR ERVL 0 442 1 4 896 219 36 0 0 chr6 40839892 40839920 -108677117 + (CTAA)n Simple_repeat Simple_repeat 1 28 0 4 896 207 0 0 0 chr6 40839920 40839942 -108677095 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 4 896 394 268 101 52 chr6 40840503 40840751 -108676286 - RLTR15 LTR ERVK -9 350 91 4 896 577 237 32 63 chr6 40840779 40840968 -108676069 - RLTR15 LTR ERVK -144 215 33 4 896 232 250 36 0 chr6 40842758 40842814 -108674223 + B4 SINE B4 2 59 -233 4 896 613 175 24 6 chr6 40842824 40842991 -108674046 + (CA)n Simple_repeat Simple_repeat 1 170 0 4 896 392 147 13 0 chr6 40842986 40843061 -108673976 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 896 273 262 36 0 chr6 40843072 40843156 -108673881 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 896 351 0 0 0 chr6 40843169 40843208 -108673829 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 896 297 282 0 34 chr6 40843473 40843561 -108673476 + GA-rich Low_complexity Low_complexity 1 85 0 4 896 260 0 57 0 chr6 40844047 40844082 -108672955 + (TTAAA)n Simple_repeat Simple_repeat 1 37 0 4 896 1893 86 8 4 chr6 40844082 40844349 -108672688 - L1_Mus3 LINE L1 -8 6630 6363 4 896 392 55 0 18 chr6 40846134 40846190 -108670847 + (TAA)n Simple_repeat Simple_repeat 2 56 0 4 896 242 248 17 92 chr6 40846687 40846807 -108670230 - L1MA6 LINE L1 -124 6176 6066 4 896 373 329 24 54 chr6 40848171 40848338 -108668699 + RSINE1 SINE B4 4 165 0 4 896 556 279 97 84 chr6 40848456 40848775 -108668262 + ORR1E LTR MaLR 9 370 0 4 896 395 350 112 57 chr6 40848914 40849662 -108667375 - L2a LINE L2 -32 3394 2586 4 896 236 345 88 76 chr6 40850861 40851112 -108665925 - MLT1A0 LTR MaLR 0 365 112 4 896 2506 254 60 22 chr6 40851113 40852356 -108664681 + Lx7 LINE L1 5318 6627 -1069 4 896 771 32 0 0 chr6 40852369 40852463 -108664574 + (GA)n Simple_repeat Simple_repeat 1 94 0 4 896 1253 268 143 12 chr6 40852466 40852749 -108664288 - Lx8 LINE L1 -634 6839 6523 4 896 648 0 0 0 chr6 40852749 40852821 -108664216 + (TTC)n Simple_repeat Simple_repeat 1 72 0 4 896 1253 268 143 12 chr6 40852821 40853035 -108664002 - Lx8 LINE L1 -951 6522 6279 4 896 526 268 89 39 chr6 40853081 40853104 -108663933 - B3A SINE B2 -6 192 172 4 896 360 119 0 0 chr6 40853104 40853163 -108663874 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 896 526 268 89 39 chr6 40853163 40853318 -108663719 - B3A SINE B2 -27 171 5 4 896 1199 221 62 18 chr6 40853668 40854035 -108663002 + RMER12 LTR ERVK 4 387 -935 4 896 3488 153 32 31 chr6 40854042 40854728 -108662309 + L1VL2 LINE L1 96 782 -5553 4 896 11576 104 17 9 chr6 40854696 40856598 -108660439 - MusHAL1 LINE L1 -453 2259 342 4 896 1803 159 18 0 chr6 40856596 40856935 -108660102 - L1Md_F LINE L1 -5382 1137 793 4 896 36401 14 0 8 chr6 40856937 40862359 -108654678 + L1Md_A LINE L1 207 5586 -297 4 896 8910 11 0 0 chr6 40862359 40863355 -108653682 + L1Md_A LINE L1 5587 6582 0 4 896 36401 11 0 1 chr6 40863355 40863368 -108653669 + L1Md_A LINE L1 5587 5598 -285 4 896 510 243 83 27 chr6 40863360 40863645 -108653392 - L1Md_F LINE L1 -5717 802 316 4 896 20000 155 10 24 chr6 40863652 40866163 -108650874 + L1_Mus1 LINE L1 2109 4627 -1256 4 896 186 43 0 0 chr6 40866163 40866186 -108650851 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 896 20000 116 10 13 chr6 40866186 40868149 -108648888 + L1_Mus1 LINE L1 4628 6537 -30 4 896 5889 61 8 13 chr6 40868150 40868925 -108648112 + L1Md_F2 LINE L1 5811 6581 -1 4 896 2685 224 88 25 chr6 40868925 40869259 -108647778 + RMER12 LTR ERVK 426 766 -556 4 896 390 57 0 0 chr6 40869259 40869312 -108647725 + (TCCA)n Simple_repeat Simple_repeat 3 55 0 4 896 2685 224 88 25 chr6 40869312 40869741 -108647296 + RMER12 LTR ERVK 767 1236 -86 4 896 1593 127 91 4 chr6 40869865 40870141 -108646896 - Lx3C LINE L1 -8 6968 6669 4 896 419 292 48 106 chr6 40870141 40870329 -108646708 + RMER12 LTR ERVK 1145 1321 -1 4 896 38 0 0 0 chr6 40870445 40870483 -108646554 + AT_rich Low_complexity Low_complexity 1 38 0 4 896 978 81 81 0 chr6 40871203 40871339 -108645698 + B1_Mus2 SINE Alu 1 147 0 4 896 592 335 0 18 chr6 40872292 40872459 -108644578 - RSINE1 SINE B4 0 165 2 4 896 8939 131 18 9 chr6 40872797 40874875 -108642162 + Lx2A LINE L1 4918 7008 0 4 896 477 0 0 0 chr6 40875839 40875892 -108641145 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 896 347 0 23 0 chr6 40876786 40876829 -108640208 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4 896 726 72 0 0 chr6 40877072 40877169 -108639868 + (TTCTC)n Simple_repeat Simple_repeat 4 100 0 4 896 745 254 52 11 chr6 40877169 40877360 -108639677 - B3 SINE B2 -12 204 6 4 896 186 369 67 82 chr6 40878138 40878333 -108638704 + L2a LINE L2 3231 3422 -4 4 896 904 359 70 23 chr6 40880035 40880477 -108636560 + MER92C LTR ERV1 1 463 -91 4 896 226 247 0 34 chr6 40880651 40880739 -108636298 - Lx8 LINE L1 -5 7468 7384 4 896 3471 63 6 4 chr6 40880867 40881345 -108635692 + L1Md_F2 LINE L1 5108 5586 -297 5 896 7712 61 10 3 chr6 40881346 40882322 -108634715 + L1Md_F2 LINE L1 5588 6570 -12 5 896 1374 271 60 62 chr6 40882378 40882421 -108634616 - RLTR20B3 LTR ERVK -54 523 483 5 896 417 39 0 0 chr6 40882421 40882472 -108634565 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 896 1374 271 60 62 chr6 40882472 40882932 -108634105 - RLTR20B3 LTR ERVK -95 482 21 5 896 244 340 89 6 chr6 40883227 40883384 -108633653 + MLT1A LTR MaLR 205 374 0 5 896 279 0 0 0 chr6 40883627 40883658 -108633379 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 896 276 30 0 0 chr6 40883658 40883690 -108633347 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 896 246 293 106 55 chr6 40883704 40883903 -108633134 + RLTR22_Mur LTR ERVK 1266 1474 -374 5 896 187 189 19 19 chr6 40884359 40884413 -108632624 + GA-rich Low_complexity Low_complexity 3 56 0 5 896 532 81 0 13 chr6 40884413 40884488 -108632549 + MTB LTR MaLR 327 400 0 5 896 3974 126 58 15 chr6 40884487 40885163 -108631874 + MTB-int LTR MaLR 2 706 -552 5 896 803 220 18 6 chr6 40885171 40885340 -108631697 - MERVL_2A-int LTR ERVL -4787 974 804 5 896 3155 93 0 0 chr6 40885349 40885768 -108631269 - MT2B2 LTR ERVL -165 419 1 5 896 226 274 77 82 chr6 40886866 40886985 -108630052 - PB1D10 SINE Alu -21 128 12 5 896 239 229 0 0 chr6 40886884 40886932 -108630105 + B1F SINE Alu 66 113 -36 5 896 6948 106 27 11 chr6 40887712 40888747 -108628290 + Lx2 LINE L1 5944 6995 -2 5 896 688 282 66 117 chr6 40888797 40889174 -108627863 + ORR1E LTR MaLR 1 358 -1 5 896 21 57 0 0 chr6 40889545 40889580 -108627457 + AT_rich Low_complexity Low_complexity 1 35 0 5 896 417 234 62 23 chr6 40889637 40889797 -108627240 + B3A SINE B2 1 173 -22 5 896 421 231 184 27 chr6 40891539 40891686 -108625351 - B3A SINE B2 -20 178 9 5 896 1144 69 0 0 chr6 40891808 40891953 -108625084 - B1_Mus2 SINE Alu -2 145 1 5 896 198 0 0 0 chr6 40891958 40891980 -108625057 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 896 2425 60 0 9 chr6 40892527 40892862 -108624175 - L1_Mus3 LINE L1 -663 5975 5644 5 896 240 59 0 0 chr6 40893228 40893262 -108623775 + (CAA)n Simple_repeat Simple_repeat 3 36 0 5 896 276 348 35 21 chr6 40893394 40893538 -108623499 + MLT1A LTR MaLR 225 370 -4 5 896 2739 59 15 3 chr6 40893634 40893976 -108623061 + ORR1A1 LTR MaLR 1 346 0 5 896 281 149 120 0 chr6 40894049 40894122 -108622915 - Lx5 LINE L1 -1209 5767 5676 5 896 30 27 0 0 chr6 40894179 40894216 -108622821 + AT_rich Low_complexity Low_complexity 1 37 0 5 897 16372 51 6 1 chr6 40895180 40898045 -108618992 - L1Md_F2 LINE L1 -3 6579 3701 5 897 1151 121 16 11 chr6 40898758 40898942 -108618095 + B2_Mm2 SINE B2 2 186 -9 5 897 591 74 0 0 chr6 40899577 40899658 -108617379 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 897 823 169 7 26 chr6 40899684 40899836 -108617201 - B1_Mur3 SINE Alu 0 149 1 5 897 299 172 0 0 chr6 40900520 40900578 -108616459 - Lx9 LINE L1 -388 7256 7199 5 897 754 220 138 51 chr6 40900578 40900823 -108616214 + Lx9 LINE L1 7244 7511 -133 5 897 297 0 0 0 chr6 40900823 40900856 -108616181 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 897 754 220 138 51 chr6 40900856 40900964 -108616073 + Lx9 LINE L1 7512 7628 -16 5 897 752 279 52 85 chr6 40902003 40902391 -108614646 + MTEb LTR MaLR 1 375 -4 5 897 237 247 12 38 chr6 40902518 40902598 -108614439 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 5 897 647 284 38 76 chr6 40902684 40902974 -108614063 + B4A SINE B4 2 280 -12 5 897 1193 57 6 0 chr6 40902979 40903137 -108613900 + (TC)n Simple_repeat Simple_repeat 2 160 0 5 897 387 0 0 0 chr6 40903138 40903181 -108613856 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 897 240 295 76 13 chr6 40903399 40903478 -108613559 + B1_Mur4 SINE Alu 65 148 -2 5 897 423 98 11 21 chr6 40903960 40904054 -108612983 + (TG)n Simple_repeat Simple_repeat 2 94 0 5 897 979 71 14 0 chr6 40905101 40905241 -108611796 + L1_Mus1 LINE L1 6426 6567 0 5 897 248 268 0 0 chr6 40905272 40905328 -108611709 + PB1D10 SINE Alu 59 114 -3 5 897 4836 120 43 24 chr6 40905333 40906120 -108610917 + Lx3C LINE L1 6168 6969 -7 5 897 2667 50 0 20 chr6 40906144 40906430 -108610607 + ORR1A1 LTR MaLR 1 285 -61 5 897 1577 52 14 5 chr6 40906430 40906642 -108610395 - L1Md_F3 LINE L1 0 6584 6371 5 897 2667 50 0 20 chr6 40906642 40906704 -108610333 + ORR1A1 LTR MaLR 286 342 -4 5 897 30 27 0 0 chr6 40906795 40906832 -108610205 + AT_rich Low_complexity Low_complexity 1 37 0 5 897 271 107 13 51 chr6 40906848 40906927 -108610110 + T-rich Low_complexity Low_complexity 5 80 0 5 897 2383 270 61 55 chr6 40907249 40907774 -108609263 - Lx8 LINE L1 -7 7466 6929 5 897 417 20 0 0 chr6 40907774 40907824 -108609213 + (TGG)n Simple_repeat Simple_repeat 3 52 0 5 897 2383 270 61 55 chr6 40907824 40908231 -108608806 - Lx8 LINE L1 -545 6928 6528 5 897 465 19 0 0 chr6 40908268 40908322 -108608715 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 897 712 366 88 39 chr6 40908530 40908860 -108608177 + MTE-int LTR MaLR 825 1072 -508 5 897 288 0 0 0 chr6 40908860 40908892 -108608145 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 897 712 359 119 52 chr6 40908892 40909226 -108607811 + MTE-int LTR MaLR 1073 1423 -157 5 897 225 0 0 0 chr6 40909440 40909465 -108607572 + (T)n Simple_repeat Simple_repeat 1 25 0 5 897 285 29 0 0 chr6 40909700 40909734 -108607303 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 897 731 357 24 48 chr6 40910015 40910386 -108606651 - MTEa LTR MaLR -3 376 15 5 897 232 337 31 10 chr6 40912556 40912652 -108604385 + MTE2b LTR MaLR 269 366 -13 5 897 372 330 81 38 chr6 40912663 40912874 -108604163 + MTE2b-int LTR MaLR 3 222 -1358 5 897 7724 49 1 2 chr6 40913384 40914500 -108602537 - L1Md_F3 LINE L1 -2 6582 5468 5 897 22 35 0 0 chr6 40915672 40915701 -108601336 + AT_rich Low_complexity Low_complexity 1 29 0 5 897 636 38 0 0 chr6 40915855 40915934 -108601103 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 897 286 18 50 17 chr6 40917027 40917090 -108599947 + L1_Mus2 LINE L1 6525 6638 0 5 897 387 0 0 0 chr6 40917602 40917645 -108599392 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 897 408 20 0 0 chr6 40917645 40917693 -108599344 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 897 356 380 10 58 chr6 40919001 40919208 -108597829 - B3A SINE B2 0 198 2 5 897 1446 346 43 42 chr6 40919772 40920445 -108596592 - MTE-int LTR MaLR -139 1441 768 5 897 36073 6 0 0 chr6 40921363 40926866 -108590171 + L1Md_A LINE L1 1 5503 -380 5 897 227 339 91 110 chr6 40926866 40926949 -108590088 - MTE-int LTR MaLR -602 1133 1046 5 897 9066 2 0 0 chr6 40926949 40927944 -108589093 + L1Md_A LINE L1 5587 6581 -1 5 897 274 309 61 57 chr6 40927944 40928087 -108588950 - MTE-int LTR MaLR -690 1045 822 5 897 20969 55 165 3 chr6 40928087 40931702 -108585335 + L1Md_F LINE L1 853 5051 -832 5 897 2037 72 0 4 chr6 40931702 40931980 -108585057 + IAPEz-int LTR ERVK 1424 1700 -4781 5 897 3051 51 0 5 chr6 40931975 40932371 -108584666 + IAPEz-int LTR ERVK 5653 6046 -435 5 897 21769 58 185 7 chr6 40932371 40936170 -108580867 - L1Md_A LINE L1 -539 5344 877 5 897 274 305 57 48 chr6 40936170 40936294 -108580743 + MTE-int LTR MaLR 822 946 -634 5 897 39480 5 0 0 chr6 40936313 40942895 -108574142 - L1Md_A LINE L1 0 6582 1 5 897 1446 346 43 42 chr6 40943813 40944486 -108572551 + MTE-int LTR MaLR 768 1441 -139 5 897 356 380 10 58 chr6 40945050 40945257 -108571780 + B3A SINE B2 2 198 0 5 897 423 0 0 0 chr6 40946564 40946611 -108570426 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 897 405 0 0 0 chr6 40946611 40946655 -108570382 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 897 286 18 50 22 chr6 40947164 40947228 -108569809 - L1_Mus2 LINE L1 0 6638 6525 5 897 522 31 0 0 chr6 40948326 40948390 -108568647 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 897 22 35 0 0 chr6 40948544 40948573 -108568464 + AT_rich Low_complexity Low_complexity 1 29 0 5 897 814 327 44 16 chr6 40950237 40950604 -108566433 - MTE2b LTR MaLR -2 377 1 5 897 2723 42 3 12 chr6 40951446 40951787 -108565250 - L1_Mus1 LINE L1 0 6567 6230 5 897 2496 50 0 0 chr6 40951787 40952107 -108564930 + L1_Mus1 LINE L1 5897 6216 -351 5 897 2830 214 63 10 chr6 40952531 40953692 -108563345 + L1_Mur2 LINE L1 859 2047 -3830 5 897 429 20 0 0 chr6 40953692 40953742 -108563295 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 897 2830 208 77 7 chr6 40953742 40953777 -108563260 + L1_Mur2 LINE L1 2048 2089 -3788 5 897 1124 201 22 7 chr6 40953755 40954026 -108563011 + L1_Mur2 LINE L1 2570 2844 -3033 5 897 7380 73 8 1 chr6 40954028 40955709 -108561328 + L1_Mus2 LINE L1 4871 6566 0 5 897 535 102 0 0 chr6 40955728 40955816 -108561221 + L1_Mus2 LINE L1 6479 6566 0 5 897 7421 161 56 47 chr6 40955888 40957496 -108559541 + L1_Mur2 LINE L1 2838 4472 -1405 5 897 2078 64 0 0 chr6 40957496 40957761 -108559276 + L1_Mus1 LINE L1 6303 6567 0 5 897 7421 161 56 47 chr6 40957761 40957966 -108559071 + L1_Mur2 LINE L1 4473 4666 -1211 5 897 1743 279 82 29 chr6 40958486 40958573 -108558464 - Lx5 LINE L1 -3 7047 6963 5 897 471 35 0 0 chr6 40958573 40958630 -108558407 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 897 1743 279 82 29 chr6 40958630 40959128 -108557909 - Lx5 LINE L1 -88 6962 6431 5 897 1505 179 149 49 chr6 40959121 40959509 -108557528 - RMER1B Other Other -103 963 537 5 897 3064 199 70 9 chr6 40959588 40960655 -108556382 - Lx5 LINE L1 -627 6423 5240 5 897 206 62 0 30 chr6 40960761 40960794 -108556243 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 5 897 22 80 0 0 chr6 40960884 40960934 -108556103 + AT_rich Low_complexity Low_complexity 1 50 0 5 897 586 375 114 71 chr6 40961385 40962006 -108555031 + MTE-int LTR MaLR 78 749 -831 5 897 3008 157 9 15 chr6 40962006 40962536 -108554501 - RLTR11A2 LTR ERVK 0 527 1 5 897 586 375 114 71 chr6 40962536 40963146 -108553891 + MTE-int LTR MaLR 750 1363 -217 5 897 29 0 0 0 chr6 40963794 40963823 -108553214 + AT_rich Low_complexity Low_complexity 1 29 0 5 897 2719 30 0 0 chr6 40964084 40964419 -108552618 + L1Md_T LINE L1 5829 6163 -419 5 897 1385 376 61 32 chr6 40964537 40965571 -108551466 + MTE-int LTR MaLR 396 1459 -121 5 897 395 357 42 16 chr6 40966131 40966339 -108550698 + B3A SINE B2 2 214 -2 5 897 191 0 103 0 chr6 40966415 40966444 -108550593 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 5 897 714 366 122 62 chr6 40968163 40969493 -108547544 + ORR1E-int LTR MaLR 1 1409 -171 5 897 407 307 23 38 chr6 40969497 40969629 -108547408 - ID_B1 SINE B4 -1 223 94 5 897 404 301 40 40 chr6 40969642 40969769 -108547268 + ORR1E-int LTR MaLR 1403 1529 -51 5 897 262 333 25 0 chr6 40969769 40969850 -108547187 + ORR1E LTR MaLR 3 85 -274 5 897 241 194 110 20 chr6 40970257 40970357 -108546680 - Lx5 LINE L1 0 7050 6942 5 897 426 323 61 12 chr6 40970773 40970936 -108546101 + B3A SINE B2 2 172 -26 6 897 356 0 23 0 chr6 40971874 40971918 -108545119 + (CAT)n Simple_repeat Simple_repeat 2 46 0 6 897 2092 131 3 9 chr6 40972630 40972953 -108544084 + Lx3A LINE L1 6661 6981 0 6 897 194 196 0 35 chr6 40972994 40973052 -108543985 + (TCTCTG)n Simple_repeat Simple_repeat 2 57 0 6 897 3993 49 22 2 chr6 40973197 40973690 -108543347 - RLTR1C LTR ERV1 0 503 1 6 897 3079 52 23 5 chr6 40973721 40974110 -108542927 - MTA_Mm LTR MaLR 0 396 1 6 897 3854 182 58 68 chr6 40974110 40975037 -108542000 + RLTR21 LTR ERVK 168 1085 -487 6 897 279 0 0 0 chr6 40975037 40975068 -108541969 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 897 2627 255 91 56 chr6 40975238 40976215 -108540822 + Lx6 LINE L1 6196 7429 -31 6 897 516 16 0 0 chr6 40978245 40978306 -108538731 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 897 361 257 10 19 chr6 40978730 40978833 -108538204 + MER2B DNA MER2_type 187 288 -48 6 897 924 163 67 11 chr6 40979029 40979232 -108537805 - B2_Mm2 SINE B2 0 216 1 6 897 2577 190 124 11 chr6 40980501 40981123 -108535914 + RLTR17 LTR ERVK 1 692 0 6 897 273 158 0 0 chr6 40983584 40983622 -108533415 - B1_Mus2 SINE Alu -109 38 1 6 897 23 33 0 0 chr6 40983907 40983937 -108533100 + AT_rich Low_complexity Low_complexity 1 30 0 6 897 697 284 28 6 chr6 40983951 40984128 -108532909 - B3A SINE B2 -16 182 2 6 897 1310 71 27 0 chr6 40985080 40985263 -108531774 + B2_Mm2 SINE B2 2 189 -6 6 897 315 146 0 18 chr6 40985345 40985401 -108531636 + Lx4B LINE L1 6683 6737 -321 6 897 6080 124 13 1 chr6 40985985 40986937 -108530100 + Lx3B LINE L1 6010 6972 -1 6 897 235 257 77 105 chr6 40987019 40987267 -108529770 + MER44A DNA MER2_type 20 260 -79 6 897 254 271 0 0 chr6 40987267 40987337 -108529700 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 897 289 245 16 112 chr6 40987620 40987702 -108529335 - ID4 SINE ID -65 87 13 6 897 552 267 7 37 chr6 40987732 40987868 -108529169 - B1_Mur1 SINE Alu -5 144 13 6 897 289 373 34 88 chr6 40987754 40987992 -108529045 - MT2B LTR ERVL -323 278 54 6 897 791 293 76 59 chr6 40988154 40988510 -108528527 + MTEa LTR MaLR 1 362 -17 6 897 336 250 238 20 chr6 40988539 40988690 -108528347 - MER20 DNA MER1_type -1 218 35 6 897 3251 62 0 2 chr6 40988711 40989112 -108527925 - MTB LTR MaLR 0 400 1 6 897 3024 156 131 25 chr6 40989112 40989725 -108527312 - MTB-int LTR MaLR 0 1258 581 6 897 2348 141 45 3 chr6 40990411 40990789 -108526248 - MTB-int LTR MaLR -521 577 184 6 897 7539 76 2 1 chr6 40990797 40992284 -108524753 - L1_Mus1 LINE L1 0 6567 5079 6 897 1084 149 21 0 chr6 40992284 40992478 -108524559 - MTB-int LTR MaLR -900 198 1 6 897 2242 88 3 59 chr6 40992480 40992819 -108524218 - MTB LTR MaLR 0 327 8 6 897 28 0 0 0 chr6 40993531 40993559 -108523478 + AT_rich Low_complexity Low_complexity 1 28 0 6 897 546 312 58 12 chr6 40993572 40993744 -108523293 - B3A SINE B2 -15 183 4 6 897 321 208 124 8 chr6 40993763 40993884 -108523153 - MER113A DNA MER1_type -132 182 48 6 897 210 250 17 0 chr6 40994075 40994135 -108522902 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 6 897 276 239 29 86 chr6 40995148 40995253 -108521784 + L1MD3 LINE L1 6454 6552 -1443 6 897 833 217 0 7 chr6 40995512 40995656 -108521381 + B1_Mur3 SINE Alu 2 144 -5 6 897 195 129 0 0 chr6 40995686 40995717 -108521320 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 6 897 1242 41 0 0 chr6 40996055 40996201 -108520836 - B1_Mus2 SINE Alu 0 147 2 6 897 547 0 23 35 chr6 40999426 40999512 -108517525 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 6 897 3461 70 25 8 chr6 40999512 41000000 -108517037 - L1Md_F2 LINE L1 -40 6542 6047 6 897 11230 54 5 0 chr6 41000000 41001667 -108515370 - L1Md_F2 LINE L1 -537 6045 4369 1 897 1243 151 61 0 chr6 41001964 41002176 -108514861 + URR1B DNA MER1_type 1 225 0 2 897 231 346 0 0 chr6 41002413 41002465 -108514572 + LTR16E1 LTR ERVL 48 99 -439 3 897 307 289 80 20 chr6 41002659 41002959 -108514078 - L1MEg LINE L1 -5123 961 644 4 897 330 302 53 27 chr6 41003231 41003418 -108513619 - L1ME1 LINE L1 -11 6168 5977 5 897 342 0 0 0 chr6 41004765 41004803 -108512234 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 6 897 2400 147 44 20 chr6 41004803 41005203 -108511834 - Lx4A LINE L1 -7 7051 6639 7 897 261 83 0 0 chr6 41005283 41005319 -108511718 + (A)n Simple_repeat Simple_repeat 1 36 0 8 897 23 33 0 0 chr6 41008081 41008111 -108508926 + AT_rich Low_complexity Low_complexity 1 30 0 9 897 453 36 0 0 chr6 41008357 41008412 -108508625 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 1 897 391 309 9 0 chr6 41008437 41008547 -108508490 + CT-rich Low_complexity Low_complexity 1 111 0 1 897 552 206 21 0 chr6 41008765 41008862 -108508175 - B1F1 SINE Alu -32 117 19 1 897 266 278 81 27 chr6 41008767 41008878 -108508159 - B4A SINE B4 -87 205 89 1 897 183 240 16 8 chr6 41009120 41009246 -108507791 + CT-rich Low_complexity Low_complexity 2 128 0 1 897 453 19 0 0 chr6 41009258 41009312 -108507725 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 897 1829 69 16 4 chr6 41011341 41011590 -108505447 + L1_Mus4 LINE L1 6385 6636 0 1 897 1522 258 122 94 chr6 41013683 41014386 -108502651 - RMER13A LTR ERVK 0 860 138 1 897 12357 145 51 13 chr6 41014389 41016583 -108500454 - MERVL_2A-int LTR ERVL -3477 2284 8 1 897 3957 136 46 6 chr6 41017303 41017977 -108499060 + Lx2A1 LINE L1 6275 6975 -33 1 897 1916 118 13 10 chr6 41018851 41019151 -108497886 + RLTR14 LTR ERV1 1 301 -81 2 897 1423 152 130 91 chr6 41019152 41019189 -108497848 - ORR1B1 LTR MaLR -19 375 333 2 897 216 0 0 0 chr6 41019189 41019213 -108497824 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 897 1423 152 130 91 chr6 41019213 41019536 -108497501 - ORR1B1 LTR MaLR -62 332 2 2 897 534 191 0 0 chr6 41019536 41019623 -108497414 + RLTR14 LTR ERV1 294 380 -2 2 897 747 294 16 33 chr6 41019687 41019930 -108497107 - MER67C LTR ERV1 -183 528 290 2 897 1047 170 55 0 chr6 41020058 41020240 -108496797 + RLTR25A LTR ERVK 1 192 -911 2 897 216 67 0 0 chr6 41020604 41020634 -108496403 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 2 897 503 286 28 18 chr6 41020678 41020895 -108496142 + L1M1 LINE L1 5567 5785 -518 2 897 599 336 7 0 chr6 41020895 41021038 -108495999 + RSINE1 SINE B4 2 145 -20 2 897 258 289 0 20 chr6 41021075 41021174 -108495863 + L1M1 LINE L1 5774 5870 -430 2 897 432 0 0 0 chr6 41022383 41022431 -108494606 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 897 323 281 70 64 chr6 41022432 41022668 -108494369 + L1MB3 LINE L1 5536 5791 -380 2 897 465 115 0 0 chr6 41022668 41022746 -108494291 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 897 294 293 147 55 chr6 41022746 41022837 -108494200 + L1MB3 LINE L1 5792 5887 -284 2 897 570 29 0 0 chr6 41022837 41022905 -108494132 + (CAAAA)n Simple_repeat Simple_repeat 3 70 0 3 897 294 293 147 55 chr6 41022905 41022923 -108494114 + L1MB3 LINE L1 5888 5913 -258 2 897 488 276 0 50 chr6 41022960 41023068 -108493969 + L1MB3 LINE L1 5990 6090 -93 2 897 2073 92 39 3 chr6 41023068 41023375 -108493662 - L1_Mus3 LINE L1 -4 6634 6317 3 897 488 276 0 50 chr6 41023375 41023426 -108493611 + L1MB3 LINE L1 6091 6141 -42 2 897 562 281 73 65 chr6 41023636 41023852 -108493185 - RMER15 LTR ERVL -16 559 342 3 897 2089 132 9 3 chr6 41023852 41024179 -108492858 - ORR1A4 LTR MaLR 0 329 1 3 897 562 281 73 65 chr6 41024179 41024209 -108492828 - RMER15 LTR ERVL -234 341 311 3 112 3560 89 10 6 chr6 41025135 41025632 -108491405 + Lx LINE L1 6151 6649 -5 3 898 3140 115 51 8 chr6 41027111 41027621 -108489416 + RMER16 LTR ERVK 2 533 0 3 898 234 0 0 0 chr6 41029542 41029568 -108487469 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 3 898 342 0 0 0 chr6 41030897 41030935 -108486102 + (CCTA)n Simple_repeat Simple_repeat 2 39 0 3 898 495 286 65 23 chr6 41031120 41031381 -108485656 - L1MA9 LINE L1 -173 6139 5868 3 898 3433 35 0 0 chr6 41031382 41031778 -108485259 + MTA_Mm LTR MaLR 1 396 0 4 898 2967 61 0 0 chr6 41031887 41032250 -108484787 - RLTR8 LTR ERVK -2 363 1 4 898 232 219 188 50 chr6 41032886 41032987 -108484050 - MLT2D LTR ERVL -66 490 376 4 898 304 260 80 44 chr6 41033110 41033247 -108483790 - MLT2D LTR ERVL -272 142 1 4 898 27 29 0 0 chr6 41036254 41036288 -108480749 + AT_rich Low_complexity Low_complexity 1 34 0 4 898 763 70 22 37 chr6 41036671 41036805 -108480232 + L1Md_F3 LINE L1 6451 6582 -2 4 898 207 0 0 0 chr6 41037298 41037321 -108479716 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 898 513 0 0 0 chr6 41037648 41037705 -108479332 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 898 312 27 0 0 chr6 41037705 41037741 -108479296 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 898 243 0 0 0 chr6 41037781 41037808 -108479229 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 898 1098 67 0 0 chr6 41037809 41037943 -108479094 - B1_Mm SINE Alu -12 135 2 4 898 333 0 0 0 chr6 41038778 41038815 -108478222 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 5 898 2557 109 123 16 chr6 41040562 41041008 -108476029 - Lx LINE L1 0 6654 6161 5 898 3388 30 49 2 chr6 41043576 41044008 -108473029 - L1Md_F3 LINE L1 -309 6275 5824 5 898 746 47 0 0 chr6 41044004 41044111 -108472926 + L1Md_F3 LINE L1 6452 6558 -26 5 898 243 0 0 0 chr6 41044111 41044138 -108472899 + (TAA)n Simple_repeat Simple_repeat 1 27 0 5 898 525 32 0 0 chr6 41044171 41044234 -108472803 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 5 898 28 29 0 0 chr6 41044338 41044373 -108472664 + AT_rich Low_complexity Low_complexity 1 35 0 5 898 260 320 76 22 chr6 41044524 41044748 -108472289 - L1M5 LINE L1 -469 5710 5475 5 898 648 279 33 104 chr6 41044817 41044978 -108472059 - B3A SINE B2 0 198 47 5 898 2166 152 53 11 chr6 41044978 41045356 -108471681 - ORR1B1 LTR MaLR 0 394 1 5 898 648 279 33 104 chr6 41045356 41045406 -108471631 - B3A SINE B2 -152 46 2 5 898 879 19 0 0 chr6 41045430 41045535 -108471502 + (TC)n Simple_repeat Simple_repeat 2 106 0 5 898 375 23 0 0 chr6 41045535 41045578 -108471459 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 898 301 310 72 72 chr6 41045647 41045679 -108471358 - B3 SINE B2 -63 153 1 6 898 389 282 91 33 chr6 41045679 41045800 -108471237 - B4A SINE B4 -164 128 1 6 898 1162 312 88 48 chr6 41046060 41046933 -108470104 - L1MC1 LINE L1 0 6333 5426 6 898 230 291 0 0 chr6 41047055 41047110 -108469927 + Lx9 LINE L1 7139 7193 -451 6 898 2182 170 40 2 chr6 41047188 41047612 -108469425 - RMER10A LTR ERVL -2 440 1 6 898 1840 160 62 8 chr6 41048342 41048739 -108468298 + Lx2 LINE L1 6643 6984 -13 6 898 655 0 53 0 chr6 41048755 41048850 -108468187 + (GA)n Simple_repeat Simple_repeat 2 101 0 6 898 378 0 0 0 chr6 41050960 41051002 -108466035 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 898 235 254 14 29 chr6 41051037 41051106 -108465931 - MTB LTR MaLR -14 386 319 6 898 225 0 0 0 chr6 41051640 41051665 -108465372 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 898 606 14 0 0 chr6 41051665 41051735 -108465302 + (GA)n Simple_repeat Simple_repeat 2 72 0 7 898 488 16 16 0 chr6 41052462 41052523 -108464514 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 898 1679 236 33 58 chr6 41052547 41052951 -108464086 - MTD LTR MaLR -2 417 21 7 898 222 37 0 0 chr6 41052951 41052978 -108464059 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 7 898 1679 236 33 58 chr6 41052978 41053001 -108464036 - MTD LTR MaLR -399 20 1 7 898 213 196 0 0 chr6 41053001 41053047 -108463990 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 898 369 302 16 16 chr6 41054087 41054215 -108462822 + MER65D LTR ERV1 4 131 -342 7 898 247 191 176 0 chr6 41054305 41054373 -108462664 + MER65D LTR ERV1 157 236 -237 7 898 459 164 0 0 chr6 41056886 41057014 -108460023 + (TCTG)n Simple_repeat Simple_repeat 4 131 0 7 898 326 202 39 72 chr6 41057599 41057780 -108459257 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 7 898 753 123 14 7 chr6 41057818 41057957 -108459080 + (TA)n Simple_repeat Simple_repeat 2 141 0 7 898 359 274 167 0 chr6 41058203 41058407 -108458630 + L1MEc LINE L1 939 1176 -5224 8 898 2576 159 6 2 chr6 41059174 41059660 -108457377 - L1_Mur2 LINE L1 -480 5397 4910 8 898 6657 104 16 4 chr6 41059658 41060825 -108456212 + L1_Mus4 LINE L1 5408 6584 -52 8 898 239 350 122 14 chr6 41061344 41061483 -108455554 - LTR48 LTR ERV1 -477 310 157 8 898 339 338 35 15 chr6 41061952 41062150 -108454887 + L1MEc LINE L1 711 912 -5488 8 898 264 296 61 0 chr6 41062226 41062341 -108454696 + L1MEc LINE L1 1018 1139 -5261 8 898 1330 76 16 5 chr6 41062425 41062611 -108454426 + B2_Mm1a SINE B2 1 188 -5 8 898 351 0 0 0 chr6 41063687 41063726 -108453311 + (CTG)n Simple_repeat Simple_repeat 3 41 0 8 898 430 277 87 58 chr6 41066691 41066791 -108450246 - B1_Mur3 SINE Alu -7 142 51 8 898 651 88 0 0 chr6 41066791 41066882 -108450155 + (TC)n Simple_repeat Simple_repeat 1 91 0 8 898 430 277 87 58 chr6 41066882 41066919 -108450118 - B1_Mur3 SINE Alu -99 50 3 8 898 235 308 104 10 chr6 41067344 41067633 -108449404 - Lx9 LINE L1 -1 7643 7328 8 898 369 126 46 0 chr6 41068050 41068137 -108448900 + (TAGA)n Simple_repeat Simple_repeat 3 93 0 9 898 324 0 0 0 chr6 41068984 41069020 -108448017 + (CTG)n Simple_repeat Simple_repeat 3 38 0 9 898 468 0 0 0 chr6 41069907 41069959 -108447078 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 898 487 94 173 16 chr6 41072195 41072320 -108444717 - L1_Mus4 LINE L1 -8 6628 6474 9 898 228 146 21 0 chr6 41072819 41072867 -108444170 + L1_Rod LINE L1 4632 4680 -1167 9 898 234 156 0 0 chr6 41073202 41073247 -108443790 + GA-rich Low_complexity Low_complexity 1 45 0 9 898 3633 47 1 0 chr6 41073564 41074125 -108442912 - L1Md_F2 LINE L1 -613 5971 5409 9 898 4343 64 2 9 chr6 41074125 41074689 -108442348 + L1Md_F2 LINE L1 6011 6570 -12 9 898 396 0 0 0 chr6 41075003 41075047 -108441990 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 9 898 309 283 36 41 chr6 41076119 41076314 -108440723 + L1MEc LINE L1 710 903 -5497 9 898 22 35 0 0 chr6 41076600 41076629 -108440408 + AT_rich Low_complexity Low_complexity 1 29 0 9 898 234 0 0 0 chr6 41077707 41077733 -108439304 + (CTG)n Simple_repeat Simple_repeat 3 28 0 1 898 686 12 12 0 chr6 41078583 41078666 -108438371 + (TC)n Simple_repeat Simple_repeat 2 85 0 1 898 207 0 0 0 chr6 41078666 41078688 -108438349 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 898 463 162 20 0 chr6 41081180 41081279 -108435758 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 898 297 0 0 0 chr6 41081391 41081424 -108435613 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 898 227 270 14 0 chr6 41081424 41081498 -108435539 - Lx9 LINE L1 -184 7460 7386 1 898 237 176 20 0 chr6 41081552 41081603 -108435434 + L1_Rod LINE L1 4638 4689 -1158 1 898 200 196 0 38 chr6 41082559 41082590 -108434447 + T-rich Low_complexity Low_complexity 22 51 0 1 898 189 0 0 0 chr6 41082590 41082611 -108434426 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 898 200 196 0 38 chr6 41082611 41082632 -108434405 + T-rich Low_complexity Low_complexity 1 21 0 1 898 1172 75 0 0 chr6 41083396 41083543 -108433494 - B1_Mus2 SINE Alu 0 147 1 1 898 430 269 72 29 chr6 41083628 41083946 -108433091 - L1M4 LINE L1 -500 5684 5351 1 898 688 192 287 0 chr6 41084222 41084389 -108432648 + B3 SINE B2 2 216 0 1 898 531 0 0 0 chr6 41084616 41084675 -108432362 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 898 198 0 0 0 chr6 41086109 41086131 -108430906 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 898 675 120 0 0 chr6 41086131 41086238 -108430799 + (TA)n Simple_repeat Simple_repeat 1 108 0 1 898 28 48 0 0 chr6 41086272 41086314 -108430723 + AT_rich Low_complexity Low_complexity 1 42 0 1 898 450 0 0 0 chr6 41086716 41086766 -108430271 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 898 464 298 16 24 chr6 41087282 41087409 -108429628 - B4 SINE B4 -69 223 98 1 898 215 208 0 0 chr6 41087414 41087461 -108429576 + T-rich Low_complexity Low_complexity 7 53 0 1 898 6655 83 6 20 chr6 41087461 41088411 -108428626 - Lx3_Mus LINE L1 0 7009 6073 1 898 612 73 0 0 chr6 41088446 41088528 -108428509 + (TCCC)n Simple_repeat Simple_repeat 4 85 0 1 898 2173 212 91 22 chr6 41088551 41089057 -108427980 - Lx6 LINE L1 -4 7456 6916 1 898 432 51 0 0 chr6 41089057 41089116 -108427921 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 1 898 2284 186 2 16 chr6 41089130 41089556 -108427481 - Lx6 LINE L1 -632 6828 6409 1 898 521 327 102 81 chr6 41089654 41090146 -108426891 - MLT1D LTR MaLR 0 505 4 1 898 492 48 0 0 chr6 41092276 41092339 -108424698 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 898 261 0 0 0 chr6 41092341 41092370 -108424667 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 898 517 170 0 46 chr6 41092370 41092543 -108424494 + (TA)n Simple_repeat Simple_repeat 1 165 0 1 898 241 276 22 22 chr6 41093958 41094047 -108422990 + MLT1H LTR MaLR 459 547 -2 1 898 548 331 40 6 chr6 41094184 41094357 -108422680 + B3A SINE B2 1 179 -19 1 898 216 111 0 0 chr6 41094358 41094394 -108422643 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 898 24 0 0 0 chr6 41094439 41094463 -108422574 + AT_rich Low_complexity Low_complexity 1 24 0 1 898 21 0 0 0 chr6 41095962 41095983 -108421054 + AT_rich Low_complexity Low_complexity 1 21 0 1 898 277 264 52 43 chr6 41096401 41096516 -108420521 - B3 SINE B2 -4 212 97 1 898 660 138 16 31 chr6 41097443 41097570 -108419467 + URR1A DNA MER1_type 79 203 -23 1 898 1034 211 19 14 chr6 41098545 41098757 -108418280 - B3 SINE B2 0 216 4 1 898 3217 284 51 6 chr6 41098879 41099960 -108417077 - Lx9 LINE L1 -171 7473 6344 1 898 315 0 0 0 chr6 41099960 41099995 -108417042 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 898 291 275 0 0 chr6 41100313 41100433 -108416604 + (CA)n Simple_repeat Simple_repeat 1 120 0 1 898 3987 115 29 3 chr6 41100546 41101159 -108415878 - Lx2A1 LINE L1 -4 7004 6376 1 898 232 304 0 71 chr6 41102582 41102667 -108414370 + L2 LINE L2 548 626 -2793 1 898 793 202 81 38 chr6 41102676 41102887 -108414150 + Lx6 LINE L1 6640 6859 -601 1 898 2406 168 16 9 chr6 41102892 41103330 -108413707 - RLTR11B LTR ERVK 0 453 13 1 898 28 61 0 0 chr6 41103424 41103473 -108413564 + AT_rich Low_complexity Low_complexity 1 49 0 1 898 3706 149 12 88 chr6 41103473 41104245 -108412792 + RMER6A LTR ERVK 44 756 0 1 898 2390 133 58 4 chr6 41104372 41104860 -108412177 + Lx3B LINE L1 6413 6971 -5 1 898 405 302 86 21 chr6 41105521 41105689 -108411348 + B3A SINE B2 1 183 -15 1 898 438 20 0 0 chr6 41105689 41105740 -108411297 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 898 405 302 86 21 chr6 41105740 41105757 -108411280 + B3A SINE B2 184 198 0 1 898 3812 108 5 90 chr6 41105877 41106545 -108410492 - L1Md_F2 LINE L1 0 6582 5972 1 898 5756 126 35 10 chr6 41107132 41107475 -108409562 + Lx4A LINE L1 4842 5193 -684 1 898 4793 88 16 91 chr6 41107475 41108287 -108408750 + RMER17A LTR ERVK 1 751 0 1 898 5756 126 35 10 chr6 41108287 41108540 -108408497 + Lx4A LINE L1 5194 5439 -438 1 898 228 35 0 0 chr6 41108540 41108569 -108408468 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 1 898 7843 147 37 19 chr6 41108569 41110150 -108406887 + Lx4A LINE L1 5440 7056 -2 1 898 233 384 22 31 chr6 41110300 41110523 -108406514 - L2a LINE L2 -151 3275 3055 1 898 355 276 77 26 chr6 41111874 41112108 -108404929 - L1MA9 LINE L1 -14 6298 6053 1 898 3093 37 73 0 chr6 41114437 41114820 -108402217 + L1_Mus2 LINE L1 6153 6563 -3 1 898 225 94 0 0 chr6 41114937 41114969 -108402068 + (TCCTG)n Simple_repeat Simple_repeat 5 36 0 1 898 1419 40 0 0 chr6 41115453 41115627 -108401410 + (TCCTG)n Simple_repeat Simple_repeat 4 177 0 1 898 397 247 128 39 chr6 41115648 41115804 -108401233 - MTC LTR MaLR -89 330 161 1 898 473 221 44 63 chr6 41116101 41116260 -108400777 - MTC LTR MaLR -263 158 3 1 898 1215 258 51 5 chr6 41116260 41116668 -108400369 - RCHARR1 DNA MER1_type -80 894 468 1 898 345 352 88 11 chr6 41116718 41116899 -108400138 - RCHARR1 DNA MER1_type -779 195 1 1 898 223 157 38 38 chr6 41117906 41117959 -108399078 + T-rich Low_complexity Low_complexity 3 55 0 1 898 522 252 38 0 chr6 41117960 41118091 -108398946 - Lx7 LINE L1 0 7696 7561 1 898 1530 101 17 4 chr6 41118102 41118340 -108398697 + L1_Mus3 LINE L1 6398 6638 0 1 898 5297 85 10 47 chr6 41118358 41119234 -108397803 - L1_Mur1 LINE L1 -786 5100 4257 1 898 3656 116 13 0 chr6 41119234 41119759 -108397278 + Lx3A LINE L1 6448 6979 -2 1 898 207 0 0 0 chr6 41119759 41119782 -108397255 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1 898 327 248 47 33 chr6 41119790 41120003 -108397034 - Lx7 LINE L1 -122 7574 7359 1 898 6238 75 1 11 chr6 41120061 41120895 -108396142 - L1Md_F2 LINE L1 -3 6579 5754 1 898 1621 70 0 0 chr6 41120896 41121110 -108395927 + L1Md_F2 LINE L1 5547 5760 -123 1 898 823 273 43 49 chr6 41121118 41121422 -108395615 - Lx7 LINE L1 -354 7342 7041 1 898 4600 45 38 17 chr6 41121517 41122104 -108394933 - L1Md_F2 LINE L1 -4 6578 5980 1 898 610 225 136 12 chr6 41122529 41122558 -108394479 - MTE2b LTR MaLR -8 371 329 1 898 287 61 41 0 chr6 41122558 41122607 -108394430 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 1 898 610 225 136 12 chr6 41122607 41122739 -108394298 - MTE2b LTR MaLR -51 328 191 1 898 225 94 0 0 chr6 41123143 41123175 -108393862 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 898 25 31 0 0 chr6 41123300 41123332 -108393705 + AT_rich Low_complexity Low_complexity 1 32 0 1 898 986 278 67 29 chr6 41123590 41124116 -108392921 - L1MA9 LINE L1 -380 5932 5387 1 898 190 369 35 12 chr6 41126019 41126104 -108390933 - MIRb SINE MIR -175 93 7 1 898 854 236 44 66 chr6 41126216 41126443 -108390594 + ID_B1 SINE B4 1 222 -2 1 898 231 186 0 48 chr6 41126573 41126635 -108390402 + (TTTG)n Simple_repeat Simple_repeat 4 62 0 1 898 728 195 6 0 chr6 41126882 41127051 -108389986 + GA-rich Low_complexity Low_complexity 1 170 0 1 898 203 220 20 0 chr6 41127589 41127639 -108389398 + (TAA)n Simple_repeat Simple_repeat 2 52 0 1 898 512 247 103 82 chr6 41127884 41128166 -108388871 + L1MC4 LINE L1 938 1225 -4990 1 898 192 40 0 0 chr6 41129437 41129462 -108387575 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 1 898 2106 145 58 12 chr6 41130345 41130688 -108386349 - ORR1B2 LTR MaLR -8 359 1 1 898 565 338 51 97 chr6 41130686 41131059 -108385978 - ORR1E LTR MaLR -3 356 1 1 898 584 304 26 78 chr6 41131059 41131301 -108385736 - ORR1E-int LTR MaLR -55 1525 1298 1 898 286 230 54 0 chr6 41131307 41131381 -108385656 - ORR1E-int LTR MaLR -247 1333 1256 1 898 266 275 11 11 chr6 41131424 41131516 -108385521 + L1M5 LINE L1 5702 5793 -371 1 898 472 295 31 5 chr6 41131811 41132002 -108385035 + Lx8 LINE L1 6966 7161 -312 1 898 289 341 18 44 chr6 41132023 41132250 -108384787 + Lx8 LINE L1 7242 7462 -11 1 898 414 0 0 0 chr6 41132538 41132584 -108384453 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 898 551 279 166 31 chr6 41132586 41133217 -108383820 - L1MA8 LINE L1 -78 6222 5488 1 898 840 246 15 5 chr6 41133217 41133421 -108383616 - B3 SINE B2 -7 209 4 1 898 549 283 128 67 chr6 41133421 41133510 -108383527 - L1MA8 LINE L1 -813 5487 5397 1 898 450 303 163 10 chr6 41133626 41133926 -108383111 - L1MEe LINE L1 -4009 845 500 1 898 229 395 0 0 chr6 41134659 41134735 -108382302 - MLT2E LTR ERVL -373 255 180 1 898 1908 150 0 31 chr6 41135886 41136238 -108380799 - Lx2 LINE L1 -98 6899 6559 1 898 3532 100 49 2 chr6 41136264 41136776 -108380261 - L1_Mus3 LINE L1 -10 6628 6093 1 898 1040 88 0 7 chr6 41136776 41136924 -108380113 + B2_Mm2 SINE B2 11 157 -38 1 898 314 176 0 0 chr6 41136924 41136975 -108380062 - Lx2 LINE L1 -431 6566 6516 1 898 528 103 31 0 chr6 41136976 41137073 -108379964 + Lx2 LINE L1 6898 6997 0 1 898 378 0 0 0 chr6 41137478 41137520 -108379517 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 1 898 239 303 118 0 chr6 41137536 41137612 -108379425 + PB1D10 SINE Alu 20 104 -13 1 898 268 360 47 58 chr6 41139174 41139318 -108377719 - MTD LTR MaLR -250 169 20 1 898 2210 172 88 79 chr6 41139318 41139765 -108377272 - RMER15 LTR ERVL 0 575 134 1 898 207 0 0 0 chr6 41139765 41139788 -108377249 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 898 2210 172 88 79 chr6 41139788 41139909 -108377128 - RMER15 LTR ERVL -442 133 2 1 898 268 360 47 58 chr6 41139909 41139935 -108377102 - MTD LTR MaLR -400 19 1 1 898 577 338 112 6 chr6 41139981 41140320 -108376717 - MTEb LTR MaLR -1 378 4 1 898 532 254 49 58 chr6 41140320 41140525 -108376512 - MTEb-int LTR MaLR -9 1571 1369 1 898 439 228 29 19 chr6 41140495 41140598 -108376439 + MTEb LTR MaLR 274 377 -2 1 898 4018 232 63 12 chr6 41141547 41141649 -108375388 - RMER1A Other Other -3 1027 912 1 898 405 0 0 0 chr6 41141649 41141694 -108375343 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 898 4018 244 83 14 chr6 41141694 41143080 -108373957 - RMER1A Other Other -119 911 2 1 898 396 0 0 0 chr6 41143094 41143138 -108373899 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 898 468 0 0 0 chr6 41143144 41143196 -108373841 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 898 1060 247 162 22 chr6 41143276 41143640 -108373397 - MTD LTR MaLR 0 419 5 2 898 294 98 0 0 chr6 41145038 41145089 -108371948 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 2 898 1132 96 0 0 chr6 41145300 41145446 -108371591 + B1_Mus2 SINE Alu 2 147 0 2 898 367 355 48 38 chr6 41145473 41145766 -108371271 + L1ME3B LINE L1 4414 4709 -1437 2 898 1132 35 7 0 chr6 41146149 41146294 -108370743 - L1Md_F2 LINE L1 -1 6581 6436 2 898 25 0 0 0 chr6 41146498 41146523 -108370514 + AT_rich Low_complexity Low_complexity 1 25 0 2 898 336 352 108 30 chr6 41146707 41147041 -108369996 + L1ME3B LINE L1 5653 6012 -228 2 898 3220 87 178 12 chr6 41147144 41147705 -108369332 - RLTR6_Mm LTR ERV1 0 654 1 2 898 16413 50 18 21 chr6 41147705 41150060 -108366977 - MMVL30-int LTR ERV1 0 3698 960 2 898 10803 26 57 17 chr6 41150135 41151547 -108365490 - MMVL30-int LTR ERV1 -2230 1468 1 2 898 3220 87 178 12 chr6 41151547 41152108 -108364929 - RLTR6_Mm LTR ERV1 0 654 1 2 898 281 193 107 39 chr6 41153249 41153454 -108363583 - RMER17D LTR ERVK -463 426 208 2 898 550 233 8 32 chr6 41154836 41154960 -108362077 - B1F2 SINE Alu -8 141 21 2 898 180 295 58 78 chr6 41155305 41155408 -108361629 - L3 LINE CR1 -3634 855 755 2 898 440 338 56 94 chr6 41155441 41155921 -108361116 + Charlie4a DNA MER1_type 14 475 -33 2 112 304 287 97 10 chr6 41156520 41156665 -108360372 - MIRc SINE MIR -96 166 10 2 899 468 0 0 0 chr6 41158753 41158805 -108358232 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 899 734 280 26 64 chr6 41159434 41159567 -108357470 - L1MA4A LINE L1 -375 5928 5814 2 899 3340 35 0 2 chr6 41159567 41159968 -108357069 - L1Md_F3 LINE L1 -11 6573 6174 2 899 734 280 26 64 chr6 41159968 41160223 -108356814 - L1MA4A LINE L1 -490 5813 5555 2 899 280 317 47 12 chr6 41160242 41160411 -108356626 + L1M5 LINE L1 4541 4715 -1431 2 899 369 0 0 0 chr6 41163649 41163690 -108353347 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 899 747 149 0 0 chr6 41163690 41163858 -108353179 + (GA)n Simple_repeat Simple_repeat 1 168 0 2 899 1149 68 7 0 chr6 41164945 41165091 -108351946 + B1_Mm SINE Alu 1 147 0 2 899 225 0 0 0 chr6 41165091 41165116 -108351921 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 2 899 2791 117 69 0 chr6 41165492 41165929 -108351108 - Lx LINE L1 0 6654 6188 2 899 27 0 0 0 chr6 41167461 41167488 -108349549 + AT_rich Low_complexity Low_complexity 1 27 0 2 899 287 49 24 0 chr6 41168945 41168986 -108348051 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 899 613 318 34 0 chr6 41168997 41169173 -108347864 - B3A SINE B2 -16 182 1 2 899 2902 61 44 34 chr6 41169193 41169603 -108347434 - L1Md_F2 LINE L1 0 6582 6169 2 899 2346 67 22 0 chr6 41169952 41170264 -108346773 - ORR1A2 LTR MaLR -8 319 1 2 899 180 0 0 0 chr6 41170270 41170290 -108346747 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 2 899 933 58 0 0 chr6 41170660 41170780 -108346257 + (GGGAGA)n Simple_repeat Simple_repeat 6 125 0 2 899 27 0 0 0 chr6 41170898 41170925 -108346112 + AT_rich Low_complexity Low_complexity 1 27 0 2 899 5298 60 1 5 chr6 41170925 41171597 -108345440 - L1_Mus1 LINE L1 -7 6560 5891 2 899 554 306 75 46 chr6 41172608 41173633 -108343404 + L1MA6 LINE L1 4742 5827 -473 2 899 21 0 0 0 chr6 41173964 41173985 -108343052 + AT_rich Low_complexity Low_complexity 1 21 0 2 899 680 71 10 0 chr6 41174701 41174800 -108342237 + (GA)n Simple_repeat Simple_repeat 2 101 0 2 899 474 294 139 29 chr6 41174948 41175109 -108341928 + Lx8 LINE L1 7162 7330 -143 2 899 357 24 0 0 chr6 41175109 41175151 -108341886 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 2 899 474 294 139 29 chr6 41175151 41175262 -108341775 + Lx8 LINE L1 7331 7464 -9 2 899 24 0 0 0 chr6 41175265 41175289 -108341748 + AT_rich Low_complexity Low_complexity 1 24 0 2 899 441 365 6 46 chr6 41176284 41176459 -108340578 + B4 SINE B4 47 214 -78 2 899 340 265 15 0 chr6 41176556 41176624 -108340413 + RSINE1 SINE B4 61 129 -36 2 899 229 277 77 0 chr6 41176691 41176756 -108340281 + B4A SINE B4 219 288 -4 2 899 239 148 37 0 chr6 41176767 41176821 -108340216 + (CATA)n Simple_repeat Simple_repeat 2 57 0 2 899 322 234 39 0 chr6 41177226 41177303 -108339734 - ID4_ SINE ID -1 82 3 2 899 277 292 31 0 chr6 41178391 41178487 -108338550 + L1MA4 LINE L1 4824 4922 -1221 2 899 1650 281 111 39 chr6 41178484 41179260 -108337777 + Lx8 LINE L1 6624 7455 -18 2 899 29 0 0 0 chr6 41179260 41179289 -108337748 + AT_rich Low_complexity Low_complexity 1 29 0 2 899 286 123 18 0 chr6 41179300 41179357 -108337680 - Lx3A LINE L1 -48 6933 6876 2 899 4986 80 13 6 chr6 41179415 41180105 -108336932 + L1_Mus2 LINE L1 5871 6565 -1 2 899 996 89 0 32 chr6 41180159 41180345 -108336692 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 899 482 329 14 4 chr6 41180355 41180631 -108336406 + L1MA4 LINE L1 5654 5935 -356 2 899 185 0 0 39 chr6 41181041 41181067 -108335970 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 2 899 472 249 34 28 chr6 41181482 41181660 -108335377 + CT-rich Low_complexity Low_complexity 2 180 0 2 899 255 93 0 0 chr6 41181964 41182007 -108335030 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 899 183 0 128 0 chr6 41182481 41182528 -108334509 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 2 899 415 315 116 12 chr6 41183220 41183471 -108333566 + L1M5 LINE L1 3255 3531 -2615 2 899 309 338 99 3 chr6 41183494 41183776 -108333261 + Lx8 LINE L1 7106 7414 -59 2 899 2706 106 0 18 chr6 41183778 41184173 -108332864 + Lx2 LINE L1 6607 6994 -3 2 899 203 0 0 36 chr6 41184271 41184299 -108332738 + (TAAAAA)n Simple_repeat Simple_repeat 1 27 0 2 899 24 85 0 0 chr6 41184384 41184443 -108332594 + AT_rich Low_complexity Low_complexity 1 59 0 2 899 378 261 71 35 chr6 41184949 41185167 -108331870 + L1M5 LINE L1 4154 4380 -1766 2 899 682 157 303 0 chr6 41185173 41185358 -108331679 + L1VL2 LINE L1 158 398 -5937 2 899 19202 174 68 37 chr6 41185394 41188298 -108328739 + Lx LINE L1 321 3150 -2733 2 899 1246 83 72 0 chr6 41188298 41188478 -108328559 + B2_Mm1t SINE B2 1 193 0 2 899 19202 151 67 17 chr6 41188478 41191629 -108325408 + Lx LINE L1 3151 6616 -38 2 899 369 0 0 0 chr6 41191629 41191670 -108325367 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 2 899 6446 109 28 7 chr6 41191670 41191697 -108325340 + Lx LINE L1 6617 6646 -8 2 899 342 269 127 7 chr6 41191699 41191841 -108325196 + L1M5 LINE L1 4373 4531 -1615 2 899 281 152 24 37 chr6 41192618 41192700 -108324337 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 899 239 320 64 0 chr6 41192766 41192844 -108324193 + Lx8 LINE L1 6234 6316 -1157 2 899 2318 144 37 56 chr6 41192845 41193329 -108323708 + IAPLTR2_Mm LTR ERVK 1 475 0 2 899 4148 60 68 23 chr6 41193352 41193970 -108323067 + IAPEz-int LTR ERVK 17 662 -5819 2 899 424 38 0 0 chr6 41193970 41194023 -108323014 + IAPEz-int LTR ERVK 1359 1411 -5070 2 899 1763 107 4 4 chr6 41194022 41194284 -108322753 + IAPEz-int LTR ERVK 2236 2497 -5183 2 899 886 73 24 0 chr6 41194281 41194404 -108322633 + IAPEz-int LTR ERVK 4785 4910 -2770 2 899 20126 13 1 2 chr6 41194406 41196767 -108320270 + IAPEz-int LTR ERVK 4123 6481 0 2 899 2317 144 37 56 chr6 41196767 41197251 -108319786 + IAPLTR2_Mm LTR ERVK 1 475 0 2 899 2576 294 62 8 chr6 41197253 41198187 -108318850 + Lx8 LINE L1 6314 7298 -175 2 899 504 0 0 0 chr6 41198189 41198245 -108318792 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 2 899 397 284 65 0 chr6 41198402 41198631 -108318406 + L1MA6 LINE L1 6007 6269 -31 2 899 21 57 0 0 chr6 41198650 41198685 -108318352 + AT_rich Low_complexity Low_complexity 1 35 0 2 899 3716 81 53 0 chr6 41199406 41199935 -108317102 - Lx3_Mus LINE L1 -4 7005 6449 2 899 235 182 0 0 chr6 41199935 41199979 -108317058 + U5 snRNA snRNA 15 58 -58 2 899 469 288 76 18 chr6 41199979 41200270 -108316767 + Lx7 LINE L1 6945 7281 -192 2 899 582 28 0 0 chr6 41200609 41200681 -108316356 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 899 7323 71 0 0 chr6 41201287 41202279 -108314758 - L1_Mm LINE L1 -335 5548 4557 2 899 542 38 48 48 chr6 41202263 41202339 -108314698 + L1_Mm LINE L1 5509 5586 -297 2 899 8234 42 4 0 chr6 41202339 41203330 -108313707 + L1Md_F2 LINE L1 5588 6582 0 2 899 201 74 0 0 chr6 41204226 41204253 -108312784 + (A)n Simple_repeat Simple_repeat 1 27 0 2 899 1554 255 28 16 chr6 41204381 41204862 -108312175 - Lx6 LINE L1 -155 7541 6793 2 899 231 443 35 43 chr6 41206117 41206348 -108310689 - LTR16A LTR ERVL -117 334 106 2 899 24 0 0 0 chr6 41209090 41209114 -108307923 + AT_rich Low_complexity Low_complexity 1 24 0 2 899 421 333 11 54 chr6 41209182 41209366 -108307671 + MLT1D LTR MaLR 3 178 -327 2 899 1651 131 124 0 chr6 41209563 41209854 -108307183 - IAPEY3_LTR LTR ERVK -5 327 1 2 899 184 204 73 18 chr6 41211031 41211086 -108305951 + MIR3 SINE MIR 109 166 -42 2 899 519 286 99 17 chr6 41211339 41211641 -108305396 + MLT1B LTR MaLR 37 388 -2 2 899 270 284 0 24 chr6 41212286 41212369 -108304668 + ID4 SINE ID 2 82 -1 2 899 523 281 98 63 chr6 41212764 41212969 -108304068 - MLT1E2 LTR MaLR -378 249 38 2 899 7150 42 2 0 chr6 41214570 41215423 -108301614 - RLTR13A LTR ERVK 0 855 1 2 899 31 0 0 0 chr6 41215587 41215618 -108301419 + AT_rich Low_complexity Low_complexity 1 31 0 2 899 576 0 0 0 chr6 41215623 41215687 -108301350 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 899 390 91 0 0 chr6 41215687 41215742 -108301295 + (TCC)n Simple_repeat Simple_repeat 1 55 0 2 899 342 0 0 0 chr6 41215745 41215783 -108301254 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 899 393 308 134 20 chr6 41215784 41215933 -108301104 - B3 SINE B2 -50 166 1 2 899 303 93 0 0 chr6 41215976 41216019 -108301018 + (GGA)n Simple_repeat Simple_repeat 1 43 0 2 899 4003 49 0 4 chr6 41217338 41217829 -108299208 - L1Md_F3 LINE L1 -14 6570 6082 2 899 1367 29 0 23 chr6 41218779 41218938 -108298099 + B2_Mm1a SINE B2 2 160 -33 2 899 279 0 0 0 chr6 41218938 41218969 -108298068 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 2 899 1367 29 0 23 chr6 41218969 41218984 -108298053 + B2_Mm1a SINE B2 161 172 -21 2 899 7783 147 25 21 chr6 41219502 41220909 -108296128 + Lx2B LINE L1 5587 6998 -2 2 899 25 51 0 0 chr6 41222631 41222670 -108294367 + AT_rich Low_complexity Low_complexity 1 39 0 2 899 6502 136 22 20 chr6 41223462 41224536 -108292501 + Lx3B LINE L1 5894 6969 -4 2 899 198 71 0 0 chr6 41224844 41224872 -108292165 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 899 1068 90 7 0 chr6 41224872 41225016 -108292021 - B1_Mus1 SINE Alu -2 146 2 2 899 278 178 44 35 chr6 41225022 41225125 -108291912 - Lx7 LINE L1 -24 7672 7597 3 899 1042 236 4 32 chr6 41225127 41225333 -108291704 + Lx7 LINE L1 6792 6994 -702 3 899 6278 55 0 11 chr6 41225333 41226130 -108290907 - L1Md_F2 LINE L1 0 6582 5795 3 899 1042 236 4 32 chr6 41226130 41226172 -108290865 + Lx7 LINE L1 6995 7033 -663 3 899 505 300 133 4 chr6 41227036 41227277 -108289760 + Lx8 LINE L1 7200 7471 -2 3 899 10580 107 12 5 chr6 41227325 41229791 -108287246 - L1_Mus3 LINE L1 -6 6632 4149 3 899 546 219 176 35 chr6 41230237 41230379 -108286658 + B3 SINE B2 1 162 -54 3 899 1168 88 0 0 chr6 41230516 41230663 -108286374 + B1_Mus2 SINE Alu 1 147 0 3 899 393 209 139 0 chr6 41232764 41232850 -108284187 + B1_Mur1 SINE Alu 46 143 -6 3 899 384 119 0 0 chr6 41232850 41232909 -108284128 + (AGGGGG)n Simple_repeat Simple_repeat 5 63 0 3 899 230 325 110 34 chr6 41232922 41233040 -108283997 + PB1 SINE Alu 1 127 0 3 899 238 289 92 10 chr6 41233156 41233254 -108283783 - MER70B LTR ERVL -112 466 361 3 899 271 331 73 0 chr6 41233536 41233660 -108283377 - RMER13B LTR ERVK -775 133 1 3 899 25 0 0 0 chr6 41233683 41233708 -108283329 + AT_rich Low_complexity Low_complexity 1 25 0 3 899 291 140 0 0 chr6 41233809 41233859 -108283178 + (TCC)n Simple_repeat Simple_repeat 2 51 0 3 899 199 130 0 36 chr6 41234309 41234365 -108282672 + (CAA)n Simple_repeat Simple_repeat 2 55 0 3 899 287 93 0 0 chr6 41234621 41234664 -108282373 - Lx3A LINE L1 -965 6016 5974 3 899 5580 126 62 4 chr6 41234668 41235569 -108281468 + Lx3A LINE L1 6029 6981 0 3 899 994 77 17 29 chr6 41235584 41235757 -108281280 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 3 899 540 0 0 0 chr6 41235758 41235818 -108281219 + (GAAAA)n Simple_repeat Simple_repeat 1 60 0 3 899 745 241 11 34 chr6 41235818 41235994 -108281043 + B3A SINE B2 27 198 0 3 899 28 61 0 0 chr6 41237038 41237087 -108279950 + AT_rich Low_complexity Low_complexity 1 49 0 3 899 192 276 0 49 chr6 41237410 41237471 -108279566 + L2a LINE L2 3109 3166 -260 3 899 6200 24 6 3 chr6 41237786 41238509 -108278528 + L1Md_F3 LINE L1 5858 6582 -2 3 899 260 213 46 138 chr6 41239527 41239636 -108277401 - MTEb LTR MaLR 0 379 281 3 899 3415 166 8 20 chr6 41239678 41240280 -108276757 + RLTR17 LTR ERVK 98 692 0 3 899 666 349 92 31 chr6 41240505 41240949 -108276088 - MTE-int LTR MaLR -42 1538 1068 3 899 320 366 30 8 chr6 41241097 41241229 -108275808 - MTE-int LTR MaLR -511 1069 935 3 899 1220 263 116 49 chr6 41241268 41241759 -108275278 + RMER5 LTR ERV1 1 524 -10 3 899 213 146 0 24 chr6 41241766 41241808 -108275229 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 899 2127 175 163 36 chr6 41241992 41242647 -108274390 + RMER6C LTR ERVK 3 700 -56 3 899 3232 51 5 0 chr6 41242647 41243041 -108273996 - MTA_Mm LTR MaLR 0 396 1 3 899 607 233 61 86 chr6 41243041 41243180 -108273857 + RMER6C LTR ERVK 570 715 -5 3 899 874 216 19 19 chr6 41244189 41244397 -108272640 + Lx5 LINE L1 6490 6697 -353 3 899 933 52 0 0 chr6 41244404 41244519 -108272518 + B1_Mm SINE Alu 18 132 -15 3 899 875 235 6 0 chr6 41244519 41244702 -108272335 + Lx5 LINE L1 6770 6953 -97 3 899 270 254 49 28 chr6 41244801 41244943 -108272094 - L1_Rod LINE L1 -4444 1403 1259 3 899 327 283 172 21 chr6 41245039 41245324 -108271713 - L1M2 LINE L1 -1221 4922 4595 3 899 290 278 120 19 chr6 41245419 41245577 -108271460 + Lx8 LINE L1 7293 7466 -7 3 899 1550 267 62 32 chr6 41245687 41246240 -108270797 - Lx9 LINE L1 -128 7516 6948 3 899 207 341 61 29 chr6 41246299 41246451 -108270586 + MIRc SINE MIR 19 176 -92 3 899 1381 285 27 38 chr6 41247350 41248160 -108268877 + RMER1B Other Other 1 513 -553 3 899 419 121 0 29 chr6 41248174 41248235 -108268802 - RLTR11A LTR ERVK -91 486 426 3 899 2389 111 25 3 chr6 41248235 41248595 -108268442 - RLTR9A LTR ERVK 0 368 1 3 899 269 235 11 69 chr6 41248595 41248620 -108268417 - RLTR11A LTR ERVK -125 402 378 3 899 875 261 95 90 chr6 41248668 41249056 -108267981 - RLTR11A LTR ERVK -122 406 17 3 899 2726 269 62 43 chr6 41249060 41250231 -108266806 + RMER1A Other Other 18 1030 0 3 899 2295 236 122 41 chr6 41256937 41257882 -108259155 - Lx9 LINE L1 -936 6708 5688 3 899 2229 252 22 15 chr6 41257895 41258543 -108258494 + Lx9 LINE L1 6765 7416 -228 3 899 698 291 55 147 chr6 41258771 41259294 -108257743 + RMER1B Other Other 51 525 -541 3 899 1378 230 78 63 chr6 41259305 41259704 -108257333 + RMER1B Other Other 1 724 -342 3 899 220 234 0 0 chr6 41259790 41259837 -108257200 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 3 899 478 209 58 36 chr6 41260612 41260751 -108256286 - L1_Mur2 LINE L1 -2049 3828 3687 3 899 756 173 8 0 chr6 41260750 41260883 -108256154 + Lx9 LINE L1 6574 6707 -937 3 899 195 129 0 0 chr6 41263590 41263621 -108253416 + (TCC)n Simple_repeat Simple_repeat 3 33 0 3 899 1098 102 0 0 chr6 41263622 41263769 -108253268 - B1_Mus2 SINE Alu 0 147 1 3 899 4414 135 45 35 chr6 41265971 41266795 -108250242 + L1_Mus1 LINE L1 404 1235 -5381 3 899 15997 182 8 67 chr6 41266762 41268778 -108248259 + L1_Mur2 LINE L1 1203 2970 -2907 3 899 4220 59 4 6 chr6 41268778 41269320 -108247717 + L1Md_F2 LINE L1 6038 6578 -4 3 899 15997 182 8 67 chr6 41269320 41271197 -108245840 + L1_Mur2 LINE L1 2971 4870 -1007 3 899 23 0 0 0 chr6 41271224 41271247 -108245790 + AT_rich Low_complexity Low_complexity 1 23 0 3 899 5323 39 0 2 chr6 41271364 41272005 -108245032 - L1Md_F3 LINE L1 -14 6570 5931 3 899 10616 40 1 0 chr6 41272005 41273354 -108243683 - L1_Mm LINE L1 -70 5813 4463 3 899 7121 101 2 0 chr6 41273352 41275042 -108241995 + L1_Mus1 LINE L1 4875 6567 0 3 899 24 32 0 0 chr6 41275430 41275461 -108241576 + AT_rich Low_complexity Low_complexity 1 31 0 3 899 231 152 0 0 chr6 41275488 41275534 -108241503 + T-rich Low_complexity Low_complexity 1 46 0 3 899 2177 149 13 13 chr6 41275877 41276265 -108240772 - Lx2B LINE L1 0 7000 6613 3 899 2559 167 133 28 chr6 41276275 41276715 -108240322 - Lx2B LINE L1 -624 6376 5883 3 899 2776 44 2 144 chr6 41276715 41277167 -108239870 + RLTR10 LTR ERVK 1 388 -2 3 899 2559 181 122 34 chr6 41277167 41277379 -108239658 - Lx2B LINE L1 -1118 5882 5696 3 899 2935 135 77 2 chr6 41277379 41277897 -108239140 + Lx2 LINE L1 6190 6746 -251 3 899 667 144 0 26 chr6 41277921 41278035 -108239002 + ORR1A2-int LTR MaLR 1853 1963 0 3 899 1689 169 59 0 chr6 41278035 41278342 -108238695 + ORR1A2 LTR MaLR 1 325 -2 3 899 1393 281 57 37 chr6 41278344 41279239 -108237798 - RMER1B Other Other -556 510 1 3 899 35 24 0 0 chr6 41280183 41280225 -108236812 + AT_rich Low_complexity Low_complexity 1 42 0 3 899 1582 210 30 62 chr6 41280613 41280688 -108236349 + Lx9 LINE L1 6937 7011 -633 3 899 5182 125 106 62 chr6 41280688 41281668 -108235369 - RLTR13D2 LTR ERVK 0 1023 1 3 899 1582 210 30 62 chr6 41281668 41282024 -108235013 + Lx9 LINE L1 7012 7354 -290 3 899 1098 250 18 114 chr6 41282028 41282571 -108234466 - RMER19C LTR ERVK -260 477 1 3 899 2462 201 20 41 chr6 41282573 41283159 -108233878 - Lx5 LINE L1 -474 6576 6003 3 899 24 32 0 0 chr6 41283572 41283603 -108233434 + AT_rich Low_complexity Low_complexity 1 31 0 3 899 564 227 23 8 chr6 41285131 41285260 -108231777 + RLTR12A LTR ERVK 3 133 -435 3 899 1588 219 50 20 chr6 41285267 41285667 -108231370 + Lx5 LINE L1 6639 7050 0 3 899 530 245 30 104 chr6 41285675 41285839 -108231198 + RLTR12A LTR ERVK 122 273 -295 3 899 352 301 17 78 chr6 41285831 41286011 -108231026 + RLTR12A LTR ERVK 383 551 -17 3 899 193 250 23 0 chr6 41286232 41286276 -108230761 - L2 LINE L2 -2090 1329 1285 3 112 7771 50 0 3 chr6 41286872 41288121 -108228916 - L1Md_F2 LINE L1 -12 6570 5326 3 900 4095 76 0 0 chr6 41288121 41288697 -108228340 + L1Md_F2 LINE L1 4716 5291 -592 3 900 714 249 71 25 chr6 41288800 41288998 -108228039 + MT2A LTR ERVL 61 267 -266 3 900 635 256 30 10 chr6 41289004 41289205 -108227832 + Lx7 LINE L1 7100 7304 -392 3 900 342 0 0 0 chr6 41289237 41289275 -108227762 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 900 243 0 0 0 chr6 41289275 41289301 -108227736 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 900 225 231 24 49 chr6 41290260 41290342 -108226695 - L1M2 LINE L1 -3946 2197 2118 3 900 240 35 0 0 chr6 41290425 41290454 -108226583 + (TTA)n Simple_repeat Simple_repeat 1 29 0 3 900 1169 276 23 42 chr6 41290576 41291004 -108226033 - Lx7 LINE L1 -1373 6323 5904 3 900 5294 117 6 0 chr6 41291476 41292311 -108224726 + MYSERV-int LTR ERVK 1 840 -5710 3 900 941 110 0 14 chr6 41292311 41292458 -108224579 - L1_Mus4 LINE L1 -388 5495 5351 3 900 6651 82 54 2 chr6 41292439 41293496 -108223541 + L1_Mus4 LINE L1 5493 6605 -31 3 900 10078 114 30 41 chr6 41293526 41293713 -108223324 + MYSERV-int LTR ERVK 821 966 -5584 3 900 1151 75 0 0 chr6 41293713 41293859 -108223178 - B1_Mm SINE Alu 0 147 2 3 900 10078 114 30 41 chr6 41293859 41294873 -108222164 + MYSERV-int LTR ERVK 967 1987 -4563 3 900 2507 45 0 9 chr6 41294873 41295189 -108221848 + L1Md_F2 LINE L1 6270 6582 0 3 900 10078 114 30 41 chr6 41295189 41295717 -108221320 + MYSERV-int LTR ERVK 1988 2531 -4019 3 900 3319 33 8 0 chr6 41295717 41296110 -108220927 - MTA_Mm LTR MaLR 0 396 1 3 900 10078 114 30 41 chr6 41296110 41296130 -108220907 + MYSERV-int LTR ERVK 2532 2551 -3999 3 900 1878 222 72 70 chr6 41296142 41296710 -108220327 - Lx4B LINE L1 -7 7051 6483 3 900 1313 137 0 0 chr6 41296724 41296935 -108220102 + MYSERV-int LTR ERVK 2514 2724 -3826 3 900 2970 125 16 10 chr6 41296939 41297455 -108219582 - L1_Mur2 LINE L1 -1602 4275 3757 3 900 6642 101 50 0 chr6 41297453 41298863 -108218174 + L1_Mus4 LINE L1 5152 6632 -4 3 900 15302 165 89 88 chr6 41298863 41299615 -108217422 + MYSERV-int LTR ERVK 2725 3509 -3041 3 900 233 35 0 0 chr6 41299615 41299644 -108217393 + L1_Mus4 LINE L1 5832 5860 -776 3 900 369 0 0 0 chr6 41299644 41299685 -108217352 + (CATAT)n Simple_repeat Simple_repeat 1 41 0 3 900 15302 165 89 88 chr6 41299685 41302725 -108214312 + MYSERV-int LTR ERVK 3510 6550 0 3 900 350 273 7 72 chr6 41302729 41302867 -108214170 + RLTR12B LTR ERVK 5 133 -395 3 900 262 237 190 29 chr6 41302880 41303054 -108213983 + RLTR15 LTR ERVK 43 244 -115 3 900 417 39 0 0 chr6 41303067 41303118 -108213919 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 3 900 1107 276 37 28 chr6 41303275 41303499 -108213538 - Lx9 LINE L1 -137 7507 7290 3 900 243 0 0 0 chr6 41303499 41303526 -108213511 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 900 1107 276 37 28 chr6 41303526 41303734 -108213303 - Lx9 LINE L1 -355 7289 7072 3 900 272 148 0 0 chr6 41303807 41303861 -108213176 - Lx2 LINE L1 -1 6996 6943 3 900 180 0 0 0 chr6 41303921 41303941 -108213096 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 3 900 243 0 0 0 chr6 41304737 41304764 -108212273 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 900 525 49 24 12 chr6 41304764 41304845 -108212192 + (TA)n Simple_repeat Simple_repeat 2 84 0 3 900 1656 31 0 0 chr6 41307065 41307257 -108209780 + B2_Mm1a SINE B2 2 193 0 3 900 1587 228 11 13 chr6 41308263 41308645 -108208392 - Lx9 LINE L1 -935 6709 6329 3 900 749 249 75 4 chr6 41308612 41308838 -108208199 - Lx9 LINE L1 -1737 5907 5666 3 900 1260 156 20 28 chr6 41308907 41309158 -108207879 + L1_Mur2 LINE L1 3404 3652 -2225 3 900 2332 181 50 6 chr6 41309149 41309654 -108207383 + L1_Mur2 LINE L1 4248 4774 -1103 3 900 1130 224 18 4 chr6 41309654 41309883 -108207154 + RMER19C LTR ERVK 246 477 -134 3 900 1696 32 0 35 chr6 41309899 41310128 -108206909 - L1Md_F3 LINE L1 -20 6564 6344 4 900 1851 44 92 0 chr6 41310126 41310377 -108206660 + L1Md_F3 LINE L1 6074 6347 -235 4 900 618 201 90 0 chr6 41310377 41310511 -108206526 + RMER19C LTR ERVK 466 611 0 3 900 258 152 0 0 chr6 41310511 41310557 -108206480 + Lx5 LINE L1 5867 5912 -1138 4 900 993 265 62 0 chr6 41310705 41310965 -108206072 + Lx6 LINE L1 6180 6455 -1005 4 900 1394 251 45 11 chr6 41310976 41311355 -108205682 + RMER19C LTR ERVK 220 611 0 4 900 582 262 58 47 chr6 41311369 41311729 -108205308 + Lx7 LINE L1 7318 7681 -15 4 900 7040 111 28 13 chr6 41311732 41313255 -108203782 + L1Md_F LINE L1 420 1956 -3927 4 900 371 21 21 0 chr6 41313255 41313303 -108203734 + (CAA)n Simple_repeat Simple_repeat 3 51 0 4 900 7040 87 20 5 chr6 41313303 41313666 -108203371 + L1Md_F LINE L1 1957 2334 -3549 4 900 19757 91 1 23 chr6 41313678 41317364 -108199673 + L1Md_T LINE L1 505 4107 -1776 4 900 2421 79 0 0 chr6 41317364 41317680 -108199357 + L1Md_F2 LINE L1 6255 6570 -12 4 900 3788 55 0 0 chr6 41317681 41318176 -108198861 + L1Md_T LINE L1 5092 5586 -297 4 900 8333 36 4 0 chr6 41318176 41319168 -108197869 + L1Md_T LINE L1 5587 6582 0 4 900 22 0 0 0 chr6 41319195 41319217 -108197820 + AT_rich Low_complexity Low_complexity 1 22 0 4 900 9419 85 9 6 chr6 41319217 41320622 -108196415 + L1Md_F LINE L1 2322 3731 -2152 4 900 488 69 0 1 chr6 41320620 41320684 -108196353 + L1_Mm LINE L1 5525 5589 -297 4 900 7513 72 3 2 chr6 41320684 41321678 -108195359 + L1Md_F2 LINE L1 5587 6581 -1 4 900 5706 80 13 2 chr6 41321695 41322486 -108194551 + L1Md_F2 LINE L1 5782 6580 -2 4 900 905 148 62 6 chr6 41322649 41322826 -108194211 - L1_Mur2 LINE L1 -1258 4619 4433 4 900 376 164 18 0 chr6 41322966 41323076 -108193961 + (GTTTG)n Simple_repeat Simple_repeat 2 113 0 4 900 665 290 96 4 chr6 41323299 41323496 -108193541 + Lx6 LINE L1 6307 6504 -956 4 900 182 62 0 30 chr6 41323496 41323529 -108193508 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 900 665 290 96 4 chr6 41323529 41323591 -108193446 + Lx6 LINE L1 6505 6588 -872 4 900 739 159 13 0 chr6 41324688 41324839 -108192198 + GA-rich Low_complexity Low_complexity 2 154 0 4 900 2497 176 7 2 chr6 41325445 41325901 -108191136 + RMER6B LTR ERVK 1 458 -3 4 900 189 416 22 14 chr6 41326055 41326194 -108190843 + MER5A DNA MER1_type 49 188 -1 4 900 1046 105 0 0 chr6 41326324 41326467 -108190570 + B1_Mus1 SINE Alu 5 147 -1 4 900 4855 60 0 8 chr6 41328454 41329077 -108187960 - L1Md_F2 LINE L1 -12 6570 5953 4 900 1314 91 21 0 chr6 41330598 41330784 -108186253 - B2_Mm2 SINE B2 -5 190 1 4 900 1419 239 79 19 chr6 41330785 41331216 -108185821 + MT2A LTR ERVL 77 533 0 4 900 342 296 16 0 chr6 41331216 41331341 -108185696 + Lx7 LINE L1 6652 6778 -918 4 900 5874 137 23 9 chr6 41331369 41332356 -108184681 - Lx LINE L1 -1 6653 5653 4 900 1132 304 46 15 chr6 41332368 41332842 -108184195 + Lx7 LINE L1 6768 7256 -440 4 900 21 71 0 0 chr6 41332970 41333012 -108184025 + AT_rich Low_complexity Low_complexity 1 42 0 4 900 7371 167 15 9 chr6 41333032 41334502 -108182535 - Lx2B LINE L1 -2 6998 5514 4 900 717 128 0 53 chr6 41334499 41334631 -108182406 - Lx2B LINE L1 -623 5263 5139 4 900 321 238 9 47 chr6 41335259 41335365 -108181672 + GA-rich Low_complexity Low_complexity 2 103 0 4 900 350 291 46 26 chr6 41335630 41335782 -108181255 - L1MDa LINE L1 -5193 1440 1286 4 900 2131 122 19 3 chr6 41335807 41336129 -108180908 + ORR1A2 LTR MaLR 1 327 0 4 900 268 309 95 4 chr6 41336185 41336462 -108180575 - L1M3 LINE L1 -1213 4927 4587 4 900 1934 264 20 36 chr6 41336569 41337205 -108179832 - Lx9 LINE L1 -78 7566 6941 4 900 3054 87 2 33 chr6 41337515 41337967 -108179070 + L1_Mus1 LINE L1 6130 6567 0 4 900 651 259 64 36 chr6 41338907 41339127 -108177910 + RMER1A Other Other 15 240 -790 4 900 1424 258 48 21 chr6 41339094 41339657 -108177380 + RMER1A Other Other 450 1009 -57 4 900 2992 204 35 21 chr6 41339651 41340311 -108176726 + RMER1A Other Other 361 1029 -1 4 900 23 33 0 0 chr6 41341426 41341456 -108175581 + AT_rich Low_complexity Low_complexity 1 30 0 4 900 970 254 36 39 chr6 41342746 41342999 -108174038 - RMER12 LTR ERVK -86 1236 983 4 900 429 20 0 0 chr6 41342999 41343049 -108173988 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 900 970 254 36 39 chr6 41343049 41343074 -108173963 - RMER12 LTR ERVK -340 982 959 4 900 2727 159 49 0 chr6 41343064 41343555 -108173482 - RMER12 LTR ERVK -807 515 1 4 900 864 266 111 12 chr6 41343724 41344066 -108172971 + Lx5 LINE L1 6651 7026 -24 4 900 273 20 39 39 chr6 41344510 41344561 -108172476 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 4 900 214 200 17 52 chr6 41345262 41345320 -108171717 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 4 900 665 24 12 0 chr6 41346278 41346361 -108170676 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 900 552 15 0 0 chr6 41347494 41347559 -108169478 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 900 468 0 0 0 chr6 41347618 41347670 -108169367 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 900 7115 115 69 2 chr6 41347691 41349225 -108167812 - Lx3A LINE L1 -7 6974 5324 4 900 296 150 17 0 chr6 41349224 41349284 -108167753 - Lx3A LINE L1 -2252 3634 3574 4 900 6121 138 59 5 chr6 41349274 41350494 -108166543 - Lx LINE L1 -1 6653 5360 4 900 600 14 0 0 chr6 41350500 41350569 -108166468 + (TC)n Simple_repeat Simple_repeat 1 69 0 4 900 6399 108 45 2 chr6 41350573 41351560 -108165477 - L1_Mus3 LINE L1 -15 6623 5595 4 900 11431 39 4 0 chr6 41351618 41353709 -108163328 - L1Md_F2 LINE L1 -12 6570 4468 4 900 1638 197 97 21 chr6 41353739 41354174 -108162863 - RMER6D LTR ERVK -252 468 1 4 900 1100 238 22 7 chr6 41357487 41357762 -108159275 - Lx6 LINE L1 -861 6599 6321 4 900 801 56 56 0 chr6 41358261 41358386 -108158651 + L1Md_F3 LINE L1 6453 6584 0 4 900 628 144 36 0 chr6 41358776 41358887 -108158150 - RMER4B LTR ERVK -454 131 17 4 900 1447 252 38 8 chr6 41358894 41359398 -108157639 + L1_Mur3 LINE L1 4022 4540 -1340 4 900 24 77 0 0 chr6 41359427 41359479 -108157558 + AT_rich Low_complexity Low_complexity 1 52 0 4 900 639 283 78 62 chr6 41359527 41359991 -108157046 - Lx7 LINE L1 0 7696 7226 4 900 2382 58 0 0 chr6 41359968 41360279 -108156758 - L1Md_F2 LINE L1 0 5883 5573 4 900 5524 61 3 3 chr6 41360279 41360987 -108156050 + L1Md_F2 LINE L1 5875 6582 0 4 900 405 266 18 0 chr6 41360989 41361098 -108155939 - Lx7 LINE L1 -441 7255 7145 4 900 2347 162 20 0 chr6 41361105 41361561 -108155476 - L1_Mur2 LINE L1 -1887 3990 3526 4 900 10381 152 10 4 chr6 41361558 41363445 -108153592 - L1_Mur2 LINE L1 -176 5701 3804 4 900 13838 91 9 0 chr6 41363493 41366211 -108150826 - L1Md_F2 LINE L1 -3 6579 3838 4 900 279 0 0 0 chr6 41366230 41366261 -108150776 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 900 420 20 0 0 chr6 41366261 41366309 -108150728 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 900 1564 48 0 0 chr6 41368785 41368971 -108148066 + B2_Mm1a SINE B2 2 187 -6 4 900 1602 229 32 17 chr6 41369971 41370548 -108146489 - Lx9 LINE L1 -936 6708 5666 4 900 1259 156 20 28 chr6 41370617 41370868 -108146169 + L1_Mur2 LINE L1 3404 3652 -2225 4 900 2366 180 52 4 chr6 41370859 41371362 -108145675 + L1_Mur2 LINE L1 4248 4774 -1103 4 900 1104 232 18 4 chr6 41371362 41371591 -108145446 + RMER19C LTR ERVK 246 477 -134 4 900 369 0 0 0 chr6 41371591 41371632 -108145405 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 900 1692 45 0 14 chr6 41371632 41371855 -108145182 - L1Md_F3 LINE L1 -21 6563 6344 4 900 1845 44 92 0 chr6 41371853 41372104 -108144933 + L1Md_F3 LINE L1 6074 6347 -235 4 900 646 187 90 0 chr6 41372104 41372238 -108144799 + RMER19C LTR ERVK 466 611 0 4 900 954 267 208 14 chr6 41372238 41372692 -108144345 + Lx6 LINE L1 5867 6455 -1005 4 900 1427 245 45 11 chr6 41372703 41373082 -108143955 + RMER19C LTR ERVK 220 611 0 4 900 635 259 58 52 chr6 41373096 41373458 -108143579 + Lx7 LINE L1 7318 7681 -15 4 900 7418 106 17 11 chr6 41373461 41375364 -108141673 + L1Md_F LINE L1 420 2334 -3549 4 900 30886 86 1 16 chr6 41375365 41380540 -108136497 + L1Md_F2 LINE L1 493 5586 -297 4 900 7755 62 1 1 chr6 41380540 41381524 -108135513 + L1Md_F2 LINE L1 5587 6570 -12 4 900 4366 71 0 0 chr6 41381525 41382090 -108134947 + L1Md_F2 LINE L1 6005 6569 -13 4 900 3702 57 4 0 chr6 41382090 41382581 -108134456 + L1Md_F2 LINE L1 5094 5586 -297 4 900 7778 61 2 0 chr6 41382581 41383563 -108133474 + L1Md_F2 LINE L1 5587 6570 -12 4 900 4372 71 2 0 chr6 41383564 41384128 -108132909 + L1Md_F2 LINE L1 6005 6569 -13 4 900 3747 57 0 0 chr6 41384128 41384621 -108132416 + L1Md_F2 LINE L1 5094 5586 -297 4 900 7848 60 1 0 chr6 41384621 41385604 -108131433 + L1Md_F2 LINE L1 5587 6570 -12 4 900 4461 65 0 0 chr6 41385605 41386171 -108130866 + L1Md_F2 LINE L1 6005 6570 -12 4 900 3746 59 0 0 chr6 41386171 41386665 -108130372 + L1Md_F2 LINE L1 5093 5586 -297 4 900 7916 59 1 1 chr6 41386665 41387661 -108129376 + L1Md_F2 LINE L1 5587 6582 0 4 900 9270 93 8 6 chr6 41387660 41389068 -108127969 + L1Md_F LINE L1 2321 3731 -2152 4 900 449 102 0 1 chr6 41389066 41389130 -108127907 + L1_Mm LINE L1 5525 5589 -297 4 900 7564 70 3 3 chr6 41389130 41390126 -108126911 + L1Md_F2 LINE L1 5587 6582 0 4 900 5674 86 8 2 chr6 41390143 41390938 -108126099 + L1Md_F2 LINE L1 5782 6580 -2 4 900 909 148 62 6 chr6 41391101 41391278 -108125759 - L1_Mur2 LINE L1 -1258 4619 4433 4 900 240 191 0 0 chr6 41391408 41391455 -108125582 + (GGTTG)n Simple_repeat Simple_repeat 2 48 0 4 900 391 68 13 39 chr6 41391456 41391533 -108125504 + (TTTTG)n Simple_repeat Simple_repeat 2 76 0 4 900 621 297 96 4 chr6 41391756 41391953 -108125084 + Lx6 LINE L1 6307 6504 -956 4 900 182 62 0 30 chr6 41391953 41391986 -108125051 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 900 621 297 96 4 chr6 41391986 41392048 -108124989 + Lx6 LINE L1 6505 6589 -871 4 900 784 159 13 0 chr6 41393145 41393302 -108123735 + GA-rich Low_complexity Low_complexity 2 160 0 4 900 2467 180 7 2 chr6 41393908 41394364 -108122673 + RMER6B LTR ERVK 1 458 -3 4 900 189 416 22 14 chr6 41394519 41394658 -108122379 + MER5A DNA MER1_type 49 188 -1 4 900 1018 112 0 0 chr6 41394788 41394931 -108122106 + B1_Mus1 SINE Alu 5 147 -1 4 900 331 24 0 0 chr6 41396842 41396884 -108120153 - L1Md_A LINE L1 -590 5992 5951 4 900 1385 258 68 35 chr6 41398375 41398398 -108118639 + MT2A LTR ERVL 61 83 -450 4 900 1320 105 11 0 chr6 41398398 41398589 -108118448 - B2_Mm1a SINE B2 0 193 1 4 900 1385 258 68 35 chr6 41398589 41399023 -108118014 + MT2A LTR ERVL 84 533 0 4 900 290 294 7 73 chr6 41399023 41399108 -108117929 + Lx7 LINE L1 6652 6728 -968 4 900 1883 58 42 15 chr6 41399108 41399372 -108117665 + L1Md_F3 LINE L1 6314 6584 0 4 900 290 294 7 73 chr6 41399372 41399422 -108117615 + Lx7 LINE L1 6729 6778 -918 4 900 5709 139 22 21 chr6 41399448 41400447 -108116590 - Lx LINE L1 -2 6652 5653 4 900 1217 287 52 29 chr6 41400459 41400937 -108116100 + Lx7 LINE L1 6768 7256 -440 4 900 21 71 0 0 chr6 41401045 41401087 -108115950 + AT_rich Low_complexity Low_complexity 1 42 0 4 900 7344 162 26 13 chr6 41401108 41402568 -108114469 - Lx2B LINE L1 -3 6997 5514 5 900 628 152 0 46 chr6 41402565 41402696 -108114341 - Lx2B LINE L1 -623 5263 5139 5 900 238 305 0 24 chr6 41403302 41403386 -108113651 + GA-rich Low_complexity Low_complexity 3 84 0 5 900 313 282 56 133 chr6 41403392 41403572 -108113465 + RLTR25B LTR ERVK 863 1028 0 5 900 319 297 46 26 chr6 41403692 41403844 -108113193 - L1MDa LINE L1 -5193 1440 1286 5 900 2182 115 16 3 chr6 41403869 41404192 -108112845 + ORR1A2 LTR MaLR 1 327 0 5 900 273 303 98 4 chr6 41404256 41404525 -108112512 - L1M2 LINE L1 -1221 4919 4587 5 900 1778 271 27 33 chr6 41404632 41405265 -108111772 - Lx9 LINE L1 -75 7569 6941 5 900 662 275 52 36 chr6 41405444 41405686 -108111351 + RMER1A Other Other 11 240 -790 5 900 1462 254 48 14 chr6 41405685 41406216 -108110821 + RMER1A Other Other 471 1009 -57 5 900 2972 209 37 11 chr6 41406210 41406862 -108110175 + RMER1A Other Other 361 1029 -1 5 900 23 33 0 0 chr6 41407979 41408009 -108109028 + AT_rich Low_complexity Low_complexity 1 30 0 5 900 980 216 68 72 chr6 41409300 41409553 -108107484 - RMER12 LTR ERVK -86 1236 986 5 900 198 71 0 0 chr6 41409553 41409581 -108107456 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 900 980 216 68 72 chr6 41409581 41409606 -108107431 - RMER12 LTR ERVK -337 985 960 5 900 2756 161 47 0 chr6 41409596 41410088 -108106949 - RMER12 LTR ERVK -807 515 1 5 900 918 257 108 12 chr6 41410247 41410590 -108106447 + Lx5 LINE L1 6651 7026 -24 5 900 232 83 20 20 chr6 41411031 41411080 -108105957 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 900 213 224 35 0 chr6 41411784 41411842 -108105195 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 5 900 609 14 0 0 chr6 41412820 41412890 -108104147 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 900 495 33 0 0 chr6 41414014 41414075 -108102962 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 900 387 0 0 0 chr6 41414075 41414117 -108102920 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 900 563 0 15 0 chr6 41414173 41414240 -108102797 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 900 7308 111 61 2 chr6 41414262 41415800 -108101237 - Lx3A LINE L1 -8 6973 5324 5 900 283 183 0 0 chr6 41415799 41415859 -108101178 - L1_Mur1 LINE L1 -2252 3634 3575 5 900 6129 132 59 7 chr6 41415849 41417071 -108099966 - Lx LINE L1 -1 6653 5360 5 900 483 18 0 0 chr6 41417076 41417132 -108099905 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 900 351 0 0 0 chr6 41417132 41417170 -108099867 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 900 6991 94 14 2 chr6 41417172 41418189 -108098848 - L1_Mus3 LINE L1 -15 6623 5595 5 112 17276 105 20 12 chr6 41418236 41422020 -108095017 - L1Md_F2 LINE L1 -12 6570 2571 5 901 1031 241 44 33 chr6 41422022 41422129 -108094908 - Lx5 LINE L1 -626 6424 6315 5 901 360 0 0 0 chr6 41422129 41422169 -108094868 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 901 1031 241 44 33 chr6 41422169 41422332 -108094705 - Lx5 LINE L1 -736 6314 6151 5 901 257 154 46 0 chr6 41422772 41422837 -108094200 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 5 901 180 0 0 0 chr6 41422837 41422857 -108094180 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 901 234 62 0 0 chr6 41422857 41422889 -108094148 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 901 1710 238 26 50 chr6 41422890 41423314 -108093723 - RMER6D LTR ERVK -4 716 303 5 901 189 0 0 0 chr6 41423314 41423335 -108093702 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 5 901 798 38 0 54 chr6 41423335 41423447 -108093590 - B1_Mm SINE Alu 0 147 42 5 901 1780 198 107 13 chr6 41423407 41423867 -108093170 - RMER6D LTR ERVK -217 503 1 5 901 1822 118 28 22 chr6 41425271 41425591 -108091446 + RLTRETN_Mm LTR ERVK 1 322 0 5 901 29281 0 0 0 chr6 41425591 41428905 -108088132 + ETnERV-int LTR ERVK 1 3314 0 5 901 1816 122 28 22 chr6 41428905 41429225 -108087812 + RLTRETN_Mm LTR ERVK 1 322 0 5 901 216 0 0 0 chr6 41430819 41430843 -108086194 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 5 901 302 225 14 0 chr6 41431939 41432010 -108085027 - Lx6 LINE L1 -861 6599 6528 5 901 803 62 23 0 chr6 41432339 41432468 -108084569 + L1Md_F3 LINE L1 6453 6584 0 5 901 592 154 27 0 chr6 41432827 41432937 -108084100 - RMER4B LTR ERVK -456 129 17 5 901 27 0 0 0 chr6 41433109 41433136 -108083901 + AT_rich Low_complexity Low_complexity 1 27 0 5 901 31569 71 14 45 chr6 41433153 41439357 -108077680 - L1Md_F2 LINE L1 -13 6569 575 5 901 16054 103 24 11 chr6 41439360 41439757 -108077280 - L1VL2 LINE L1 -22 3593 3178 5 901 324 0 0 0 chr6 41439757 41439793 -108077244 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 901 16054 107 40 10 chr6 41439793 41442864 -108074173 - L1VL2 LINE L1 -438 3177 13 5 901 1958 159 101 7 chr6 41442864 41443164 -108073873 - L1_Mur2 LINE L1 -2058 3819 3484 5 901 342 0 0 0 chr6 41443164 41443202 -108073835 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 901 1958 159 101 7 chr6 41443202 41443356 -108073681 - L1_Mur2 LINE L1 -2394 3483 3324 5 901 9944 122 17 11 chr6 41445286 41446554 -108070483 - L1_Mur2 LINE L1 -2544 3333 2050 5 901 369 0 0 0 chr6 41446554 41446595 -108070442 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 901 9944 122 17 11 chr6 41446595 41446928 -108070109 - L1_Mur2 LINE L1 -3828 2049 1722 5 901 283 339 0 0 chr6 41447072 41447184 -108069853 + (TGG)n Simple_repeat Simple_repeat 1 112 0 5 901 875 176 62 112 chr6 41447302 41447526 -108069511 + RMER19C LTR ERVK 1 213 -398 5 901 3668 162 35 13 chr6 41447553 41448179 -108068858 - RLTR26 LTR ERVK -2 640 1 5 901 2248 65 0 4 chr6 41448242 41448519 -108068518 + L1_Mus2 LINE L1 6287 6562 -4 5 901 1252 236 11 94 chr6 41448536 41448887 -108068150 + RMER19C LTR ERVK 284 605 -6 5 901 2854 183 5 30 chr6 41448887 41449451 -108067586 + RLTR19-int LTR ERVK 1467 2016 -4121 5 901 1157 235 42 11 chr6 41449477 41449740 -108067297 - Lx6 LINE L1 -878 6582 6312 5 901 227 304 0 0 chr6 41449801 41449880 -108067157 + Lx7 LINE L1 7617 7695 -1 5 901 730 94 17 0 chr6 41450060 41450177 -108066860 + (TCC)n Simple_repeat Simple_repeat 2 120 0 5 901 236 83 28 0 chr6 41450179 41450215 -108066822 + (TTC)n Simple_repeat Simple_repeat 3 39 0 5 901 288 0 0 0 chr6 41450401 41450433 -108066604 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 5 901 29 70 0 0 chr6 41451805 41451862 -108065175 + AT_rich Low_complexity Low_complexity 1 57 0 5 901 613 325 27 99 chr6 41452173 41452548 -108064489 + MTE2b LTR MaLR 3 350 -29 5 901 21 0 0 0 chr6 41452959 41452980 -108064057 + AT_rich Low_complexity Low_complexity 1 21 0 5 901 366 42 0 0 chr6 41455995 41456043 -108060994 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 901 396 297 19 19 chr6 41456676 41456779 -108060258 - PB1D7 SINE Alu -12 108 6 5 901 915 190 45 0 chr6 41456811 41456990 -108060047 - Lx9 LINE L1 -244 7400 7214 5 901 6381 30 4 0 chr6 41456990 41457695 -108059342 - L1Md_T LINE L1 -1 6581 5874 5 901 3253 74 0 19 chr6 41458683 41459110 -108057927 - L1Md_F2 LINE L1 -3 6579 6161 5 901 303 182 65 0 chr6 41459474 41459504 -108057533 + HAL1-3A_ME LINE L1 1937 1970 -888 5 901 620 299 11 17 chr6 41459504 41459684 -108057353 + B3A SINE B2 4 182 -16 5 901 303 182 65 0 chr6 41459684 41459730 -108057307 + HAL1-3A_ME LINE L1 1971 2017 -841 5 901 23 33 0 0 chr6 41459787 41459817 -108057220 + AT_rich Low_complexity Low_complexity 1 30 0 5 901 428 150 12 0 chr6 41460098 41460178 -108056859 + GA-rich Low_complexity Low_complexity 2 82 0 5 901 437 295 64 29 chr6 41460940 41461111 -108055926 + MTEa LTR MaLR 200 376 -3 5 901 356 98 0 32 chr6 41461361 41461424 -108055613 - RMER1B Other Other -4 1062 1002 5 901 7887 62 0 3 chr6 41461428 41463053 -108053984 - L1Md_F2 LINE L1 -12 6570 4953 5 901 543 182 0 29 chr6 41463027 41463129 -108053908 - L1Md_F2 LINE L1 -6170 446 348 5 901 2292 223 61 17 chr6 41463129 41463933 -108053104 - RMER1B Other Other -52 1014 43 5 901 320 327 110 74 chr6 41464092 41464730 -108052307 + L1MEf LINE L1 869 1529 -4671 5 901 3888 108 0 11 chr6 41465266 41465789 -108051248 - Lx3A LINE L1 -4 6977 6461 5 901 501 97 0 0 chr6 41466493 41466565 -108050472 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 901 24 67 0 0 chr6 41466775 41466820 -108050217 + AT_rich Low_complexity Low_complexity 1 45 0 5 901 246 32 0 0 chr6 41469266 41469297 -108047740 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 901 720 108 54 8 chr6 41470720 41470850 -108046187 - Lx3A LINE L1 0 6981 6846 5 901 396 248 22 129 chr6 41475215 41475354 -108041683 + MT2B LTR ERVL 141 264 -337 5 901 912 135 8 0 chr6 41475255 41475388 -108041649 + B1_Mus1 SINE Alu 15 148 0 5 901 27 29 0 0 chr6 41475388 41475422 -108041615 + AT_rich Low_complexity Low_complexity 1 34 0 5 901 1428 92 22 0 chr6 41475503 41475688 -108041349 - B2_Mm2 SINE B2 -6 189 1 5 901 363 336 9 0 chr6 41475865 41475972 -108041065 - PB1D10 SINE Alu -9 108 1 5 901 2842 244 63 24 chr6 41477038 41477068 -108039969 + L1_Mur3 LINE L1 47 76 -7636 5 901 2658 90 116 0 chr6 41477068 41477266 -108039771 - BGLII_Mus LTR ERVK 0 422 218 5 901 180 0 0 0 chr6 41477266 41477286 -108039751 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 901 2658 90 116 0 chr6 41477286 41477465 -108039572 - BGLII_Mus LTR ERVK -205 217 2 5 901 2842 244 63 24 chr6 41477465 41478215 -108038822 + L1_Mur3 LINE L1 77 857 -6855 5 901 1713 191 60 27 chr6 41478215 41478580 -108038457 + RLTR11A2 LTR ERVK 151 527 0 5 901 262 271 0 0 chr6 41478680 41478739 -108038298 + Lx6 LINE L1 6763 6821 -639 5 901 3822 122 43 22 chr6 41478739 41479319 -108037718 + Lx LINE L1 6062 6653 -1 5 901 1839 264 65 39 chr6 41479453 41479993 -108037044 + Lx5 LINE L1 6455 7008 -42 5 901 694 110 25 0 chr6 41480011 41480129 -108036908 + (GGAA)n Simple_repeat Simple_repeat 4 124 0 5 901 30 0 0 0 chr6 41480138 41480168 -108036869 + AT_rich Low_complexity Low_complexity 1 30 0 5 901 849 20 0 0 chr6 41480297 41480396 -108036641 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 5 901 357 255 36 3 chr6 41481637 41481736 -108035301 - PB1D7 SINE Alu -14 106 6 5 901 320 370 95 37 chr6 41481736 41482084 -108034953 - L1MC LINE L1 -2230 5652 5285 5 901 431 265 71 29 chr6 41482323 41482463 -108034574 - B1_Mur1 SINE Alu -2 147 2 5 901 1146 80 11 11 chr6 41486709 41486886 -108030151 + (GGAAA)n Simple_repeat Simple_repeat 2 178 0 5 901 218 53 0 73 chr6 41488690 41488731 -108028306 + (A)n Simple_repeat Simple_repeat 1 38 0 5 901 573 168 0 0 chr6 41491261 41491368 -108025669 + A-rich Low_complexity Low_complexity 1 107 0 5 901 188 358 30 0 chr6 41494831 41494898 -108022139 + MIRb SINE MIR 7 75 -193 6 901 235 274 113 21 chr6 41495522 41495619 -108021418 + PB1 SINE Alu 2 107 -20 6 901 227 345 52 17 chr6 41495619 41495633 -108021404 + B4A SINE B4 87 201 -91 6 901 623 345 48 85 chr6 41499440 41499877 -108017160 - MLT1C LTR MaLR -4 463 43 6 901 27 0 0 0 chr6 41500116 41500143 -108016894 + AT_rich Low_complexity Low_complexity 1 27 0 1 901 195 42 0 0 chr6 41500469 41500493 -108016544 + (T)n Simple_repeat Simple_repeat 1 24 0 2 901 190 392 74 8 chr6 41502919 41503040 -108013997 + MIR SINE MIR 19 147 -121 3 901 276 354 73 81 chr6 41503137 41503166 -108013871 - L3 LINE CR1 -358 4131 4099 4 901 984 18 0 0 chr6 41503166 41503280 -108013757 + (TC)n Simple_repeat Simple_repeat 1 114 0 5 901 276 354 73 81 chr6 41503280 41503828 -108013209 - L3 LINE CR1 -391 4098 3560 4 901 369 0 0 0 chr6 41505870 41505911 -108011126 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 901 234 312 195 0 chr6 41506895 41506972 -108010065 + B1F1 SINE Alu 4 95 -54 7 901 218 32 0 31 chr6 41506984 41507016 -108010021 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 8 901 341 342 68 52 chr6 41511032 41511223 -108005814 + MLT1A1 LTR MaLR 1 194 -214 9 901 545 139 16 16 chr6 41511224 41511348 -108005689 + CT-rich Low_complexity Low_complexity 2 125 0 1 901 353 274 99 49 chr6 41511402 41511544 -108005493 + MLT1A1 LTR MaLR 248 396 -12 9 901 450 0 0 0 chr6 41511610 41511660 -108005377 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 901 1212 181 67 20 chr6 41511888 41512142 -108004895 + RLTR41 LTR ERV1 181 446 0 1 901 362 305 149 74 chr6 41512142 41512411 -108004626 + MLT1D LTR MaLR 34 322 -183 1 901 2533 126 47 38 chr6 41512999 41513470 -108003567 - IAPLTR2_Mm LTR ERVK 0 475 1 1 901 769 325 163 26 chr6 41513763 41514618 -108002419 + L1MEc LINE L1 278 1249 -5151 1 901 314 23 0 23 chr6 41514892 41514936 -108002101 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 1 901 218 362 0 0 chr6 41514954 41515023 -108002014 + ID4_ SINE ID 12 80 -3 1 901 300 313 0 0 chr6 41515051 41515118 -108001919 + B4A SINE B4 82 148 -144 1 901 442 319 34 0 chr6 41515060 41515179 -108001858 + B1F1 SINE Alu 6 128 -21 1 901 848 289 68 21 chr6 41515202 41515481 -108001556 + B4A SINE B4 1 292 0 2 901 28 0 0 0 chr6 41516052 41516080 -108000957 + AT_rich Low_complexity Low_complexity 1 28 0 2 901 364 314 29 0 chr6 41516181 41516318 -108000719 + L1MEc LINE L1 189 329 -6071 2 901 4321 250 75 69 chr6 41516579 41518137 -107998900 - Lx6 LINE L1 -4 7456 5891 2 901 1232 137 6 0 chr6 41518137 41518320 -107998717 + RMER20B LTR ERVK 1 184 -443 2 901 2113 138 38 3 chr6 41518323 41518695 -107998342 - L1_Mur3 LINE L1 -238 5642 5258 2 901 1283 131 89 4 chr6 41518689 41518926 -107998111 + L1_Mur3 LINE L1 4762 5018 -862 2 901 646 297 72 48 chr6 41518929 41519495 -107997542 + L1MEc LINE L1 605 1184 -5216 2 901 25 31 0 0 chr6 41519575 41519607 -107997430 + AT_rich Low_complexity Low_complexity 1 32 0 2 901 408 294 7 7 chr6 41519645 41519782 -107997255 + B1F SINE Alu 4 140 -9 2 901 231 188 0 0 chr6 41519834 41519882 -107997155 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 901 189 139 0 0 chr6 41520078 41520121 -107996916 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 901 843 279 72 52 chr6 41520156 41520462 -107996575 + Lx5 LINE L1 6722 7033 -17 3 901 1003 104 0 18 chr6 41520464 41520630 -107996407 + (GGGA)n Simple_repeat Simple_repeat 4 166 0 3 901 730 87 26 0 chr6 41520680 41520795 -107996242 + (GAAAA)n Simple_repeat Simple_repeat 3 120 0 3 901 205 85 21 21 chr6 41520814 41520832 -107996205 + (CAAAA)n Simple_repeat Simple_repeat 2 19 0 3 901 592 172 205 0 chr6 41520832 41520954 -107996083 + B1_Mus1 SINE Alu 1 147 -1 3 901 205 85 21 21 chr6 41520954 41520983 -107996054 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 3 901 364 282 152 57 chr6 41521170 41521328 -107995709 - L1M2 LINE L1 -821 5322 5150 3 901 334 271 75 17 chr6 41521332 41521452 -107995585 - L1M2 LINE L1 -1704 4439 4313 3 901 24 0 0 0 chr6 41521711 41521735 -107995302 + AT_rich Low_complexity Low_complexity 1 24 0 3 901 423 106 0 0 chr6 41521845 41521911 -107995126 + (GGGA)n Simple_repeat Simple_repeat 2 67 0 3 901 285 227 102 10 chr6 41521911 41522011 -107995026 - RMER10A LTR ERVL -276 122 6 4 901 201 211 0 0 chr6 41522238 41522295 -107994742 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 4 901 305 266 6 149 chr6 41522338 41522407 -107994630 - B3A SINE B2 -4 194 141 4 901 1622 150 112 21 chr6 41522407 41522584 -107994453 - RMER17C LTR ERVK 0 410 232 4 901 483 33 0 0 chr6 41522584 41522645 -107994392 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 4 901 1622 150 112 21 chr6 41522645 41522841 -107994196 - RMER17C LTR ERVK -179 231 4 4 901 305 266 6 149 chr6 41522841 41522939 -107994098 - B3A SINE B2 -58 140 51 4 901 2702 46 9 11 chr6 41522974 41523324 -107993713 + L1_Mus1 LINE L1 6217 6565 -2 4 901 25 0 0 0 chr6 41523324 41523349 -107993688 + AT_rich Low_complexity Low_complexity 1 25 0 4 901 317 300 19 53 chr6 41523485 41523741 -107993296 + L1ME1 LINE L1 5662 5910 -254 4 901 22 0 0 0 chr6 41523855 41523877 -107993160 + AT_rich Low_complexity Low_complexity 1 22 0 4 901 345 369 137 25 chr6 41525331 41525734 -107991303 + L1MC4a LINE L1 5458 5905 -1977 4 901 27 0 0 0 chr6 41526590 41526617 -107990420 + AT_rich Low_complexity Low_complexity 1 27 0 5 901 864 117 29 12 chr6 41527146 41527319 -107989718 + CT-rich Low_complexity Low_complexity 4 179 0 5 901 244 359 71 8 chr6 41527418 41527563 -107989474 - MIRm SINE MIR -56 152 3 5 901 294 342 20 27 chr6 41527658 41527808 -107989229 - MIR SINE MIR -66 196 48 5 901 1130 41 0 82 chr6 41528407 41528565 -107988472 + B1_Mus1 SINE Alu 2 146 -2 5 901 208 53 53 0 chr6 41528565 41528603 -107988434 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 901 648 152 0 0 chr6 41528639 41528757 -107988280 + GA-rich Low_complexity Low_complexity 4 121 0 5 901 189 171 0 0 chr6 41529457 41529492 -107987545 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 5 901 390 42 0 0 chr6 41529519 41529567 -107987470 + (CATA)n Simple_repeat Simple_repeat 1 48 0 5 901 6369 132 89 20 chr6 41529651 41530783 -107986254 - RMER12 LTR ERVK -111 1211 2 5 901 298 159 57 0 chr6 41530784 41530872 -107986165 + GA-rich Low_complexity Low_complexity 2 94 0 6 901 205 195 24 0 chr6 41530907 41530948 -107986089 + GA-rich Low_complexity Low_complexity 2 43 0 6 901 22 56 0 0 chr6 41531802 41531838 -107985199 + AT_rich Low_complexity Low_complexity 1 36 0 6 901 327 104 0 0 chr6 41532038 41532086 -107984951 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 6 901 182 37 37 0 chr6 41532167 41532194 -107984843 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 6 901 234 324 105 26 chr6 41532281 41532395 -107984642 - ORR1E LTR MaLR -5 374 252 6 901 448 333 17 0 chr6 41532468 41532585 -107984452 - ORR1E LTR MaLR -213 146 28 6 901 2747 175 107 5 chr6 41532654 41533280 -107983757 + RMER6C LTR ERVK 1 690 0 6 901 207 0 0 0 chr6 41533369 41533392 -107983645 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 901 496 0 0 0 chr6 41533447 41533504 -107983533 + B1_Mm SINE Alu 81 137 -10 6 901 216 24 48 24 chr6 41533504 41533546 -107983491 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 901 319 324 17 91 chr6 41534286 41534517 -107982520 - HAL1b LINE L1 -462 1547 1334 6 901 1320 82 11 11 chr6 41534551 41534735 -107982302 - B2_Mm1t SINE B2 -9 184 1 7 901 403 369 58 88 chr6 41534973 41535267 -107981770 + MLT1J LTR MaLR 1 285 -227 7 901 577 284 0 0 chr6 41535943 41536070 -107980967 - B4A SINE B4 -2 290 164 7 901 907 236 0 5 chr6 41537145 41537349 -107979688 + Lx6 LINE L1 7235 7437 -23 7 901 24 67 0 0 chr6 41538600 41538645 -107978392 + AT_rich Low_complexity Low_complexity 1 45 0 7 901 1255 232 124 13 chr6 41538667 41539039 -107977998 - Lx6 LINE L1 -57 7403 6991 7 901 408 304 25 72 chr6 41539044 41539281 -107977756 + HAL1 LINE L1 1427 1652 -855 7 901 597 40 0 0 chr6 41541626 41541702 -107975335 + (TC)n Simple_repeat Simple_repeat 2 77 0 7 901 21 0 0 0 chr6 41542559 41542580 -107974457 + AT_rich Low_complexity Low_complexity 1 21 0 7 901 621 171 116 65 chr6 41543150 41543382 -107973655 - Lx9 LINE L1 0 7644 7401 7 901 423 274 9 9 chr6 41543766 41543873 -107973164 - PB1D10 SINE Alu -9 108 2 8 901 1774 237 32 39 chr6 41544019 41544427 -107972610 - MTD LTR MaLR -14 405 1 8 901 251 328 105 9 chr6 41544684 41544798 -107972239 + MLT1A LTR MaLR 222 346 -28 8 901 294 311 0 0 chr6 41544828 41544934 -107972103 - L1MB4 LINE L1 -252 5928 5823 8 901 1737 168 19 6 chr6 41544965 41545277 -107971760 + RLTR15 LTR ERVK 1 316 -43 8 901 772 244 56 4 chr6 41545312 41545563 -107971474 - L1MB4 LINE L1 -1067 5079 4816 8 901 2006 152 54 41 chr6 41546364 41546756 -107970281 - RMER10B LTR ERVL 0 398 2 8 901 612 253 124 16 chr6 41547656 41547841 -107969196 + B4A SINE B4 1 205 -87 8 901 289 257 0 13 chr6 41547841 41547916 -107969121 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 901 272 27 27 0 chr6 41548354 41548391 -107968646 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 901 803 307 81 34 chr6 41548535 41548943 -107968094 + MLT1D LTR MaLR 69 495 -10 8 901 252 0 0 0 chr6 41549077 41549105 -107967932 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 9 901 1138 62 7 0 chr6 41549121 41549265 -107967772 - B1_Mus2 SINE Alu -1 146 2 9 901 22 56 0 0 chr6 41549644 41549680 -107967357 + AT_rich Low_complexity Low_complexity 1 36 0 9 112 265 289 158 10 chr6 41549802 41549901 -107967136 - PB1D10 SINE Alu -7 113 1 9 902 695 242 101 0 chr6 41551872 41552021 -107965016 + B3 SINE B2 3 166 -50 9 902 619 173 30 59 chr6 41552023 41552158 -107964879 - RLTR25A LTR ERVK 0 1028 898 9 902 241 224 20 0 chr6 41552246 41552295 -107964742 - U7 snRNA snRNA -4 59 10 9 902 3064 208 60 46 chr6 41552370 41552806 -107964231 - RLTR25A LTR ERVK -246 857 414 9 902 278 26 0 25 chr6 41552806 41552846 -107964191 + (CAA)n Simple_repeat Simple_repeat 1 39 0 9 902 3064 208 60 46 chr6 41552846 41553131 -107963906 - RLTR25A LTR ERVK -690 413 126 9 902 478 197 0 15 chr6 41553132 41553266 -107963771 + (TA)n Simple_repeat Simple_repeat 1 132 0 9 902 571 165 54 101 chr6 41553271 41553419 -107963618 - RLTR25A LTR ERVK -887 141 1 9 902 291 195 45 22 chr6 41553419 41553475 -107963562 + B3 SINE B2 159 216 0 9 902 255 61 0 0 chr6 41554995 41555028 -107962009 + (T)n Simple_repeat Simple_repeat 1 33 0 1 902 315 0 0 0 chr6 41558758 41558793 -107958244 + (TTTTA)n Simple_repeat Simple_repeat 4 38 0 1 902 376 176 54 0 chr6 41561314 41561388 -107955649 - ID4 SINE ID -4 79 2 1 902 259 217 71 24 chr6 41561505 41561590 -107955447 - L1M5 LINE L1 -2096 5786 5698 1 902 711 306 53 41 chr6 41561867 41562205 -107954832 - MLT1A0 LTR MaLR -12 353 12 1 902 263 211 71 70 chr6 41562209 41562310 -107954727 - L1M5 LINE L1 -669 5455 5355 1 902 1188 165 33 5 chr6 41562821 41563034 -107954003 - URR1A DNA MER1_type -2 224 6 1 902 837 192 472 25 chr6 41573209 41573434 -107943603 - Lx9 LINE L1 -1 7643 7318 1 902 504 0 0 0 chr6 41573434 41573490 -107943547 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 1 902 837 189 110 34 chr6 41573490 41573561 -107943476 - Lx9 LINE L1 -327 7317 7240 1 902 340 328 52 21 chr6 41573952 41574145 -107942892 + MER58C DNA MER1_type 4 202 -13 1 902 198 0 0 0 chr6 41575992 41576014 -107941023 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 902 1274 48 6 0 chr6 41576280 41576446 -107940591 + (GA)n Simple_repeat Simple_repeat 2 168 0 1 902 254 203 14 28 chr6 41577996 41578067 -107938970 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 1 902 235 142 73 12 chr6 41578079 41578243 -107938794 + (TA)n Simple_repeat Simple_repeat 1 174 0 1 902 22 0 0 0 chr6 41581329 41581351 -107935686 + AT_rich Low_complexity Low_complexity 1 22 0 1 902 504 0 0 0 chr6 41582024 41582080 -107934957 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 902 663 67 89 152 chr6 41582080 41582238 -107934799 - B2_Mm2 SINE B2 -47 148 1 1 902 181 289 103 51 chr6 41582359 41582534 -107934503 - MIRc SINE MIR -15 253 70 1 902 480 224 56 0 chr6 41583304 41583411 -107933626 - B1F SINE Alu -25 124 12 1 902 339 325 34 0 chr6 41583308 41583425 -107933612 - ID_B1 SINE B4 -26 198 78 1 902 368 321 0 0 chr6 41583434 41583540 -107933497 - PB1D10 SINE Alu 0 117 12 1 902 491 273 14 0 chr6 41583554 41583697 -107933340 - MER2 DNA MER2_type -123 222 78 1 902 275 330 9 0 chr6 41586953 41587059 -107929978 + PB1D10 SINE Alu 3 109 -8 1 902 27 29 0 0 chr6 41587081 41587115 -107929922 + AT_rich Low_complexity Low_complexity 1 34 0 1 902 183 42 0 0 chr6 41587440 41587464 -107929573 + (CAG)n Simple_repeat Simple_repeat 3 26 0 1 902 360 0 0 0 chr6 41587676 41587716 -107929321 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 902 365 225 42 30 chr6 41589866 41590031 -107927006 + (TATG)n Simple_repeat Simple_repeat 3 169 0 1 902 224 302 46 15 chr6 41589963 41590094 -107926943 + (TG)n Simple_repeat Simple_repeat 2 136 0 1 902 329 43 21 0 chr6 41590437 41590484 -107926553 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 902 190 231 0 0 chr6 41590591 41590630 -107926407 + MIR3 SINE MIR 163 201 -7 1 902 255 41 40 20 chr6 41591089 41591139 -107925898 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 1 902 180 0 0 0 chr6 41592671 41592691 -107924346 + (CCCCCA)n Simple_repeat Simple_repeat 6 25 0 1 902 410 301 80 11 chr6 41594145 41594333 -107922704 + MIRc SINE MIR 38 238 -30 1 902 342 375 25 18 chr6 41594423 41594586 -107922451 + MIRb SINE MIR 8 171 -97 1 902 1005 184 86 10 chr6 41595059 41595268 -107921769 - URR1B DNA MER1_type 0 225 1 1 902 200 293 24 24 chr6 41597974 41598058 -107918979 + CT-rich Low_complexity Low_complexity 3 86 0 1 902 318 70 0 0 chr6 41598480 41598523 -107918514 + HAL1-3A_ME LINE L1 1969 2011 -847 1 902 458 197 8 0 chr6 41598528 41598645 -107918392 + (CA)n Simple_repeat Simple_repeat 2 119 0 1 902 232 348 0 52 chr6 41599056 41599153 -107917884 - B1_Mm SINE Alu -47 100 9 1 902 299 280 123 67 chr6 41599524 41599719 -107917318 - L2 LINE L2 -913 2506 2301 1 902 217 213 0 0 chr6 41599877 41599924 -107917113 + (AGTAG)n Simple_repeat Simple_repeat 5 51 0 1 902 7842 62 2 19 chr6 41600515 41601712 -107915325 - L1_Mus2 LINE L1 -2 6564 5387 1 902 1079 279 191 27 chr6 41601930 41602562 -107914475 + L1MB4 LINE L1 5374 6108 -72 1 902 387 132 0 0 chr6 41603674 41603742 -107913295 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 902 2590 83 3 3 chr6 41603826 41604174 -107912863 + L1_Mus1 LINE L1 6220 6567 0 1 902 1112 65 0 0 chr6 41604198 41604336 -107912701 + B1_Mm SINE Alu 1 138 -9 1 902 1105 91 0 17 chr6 41604336 41604515 -107912522 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 1 902 607 281 86 30 chr6 41605313 41605581 -107911456 + L3 LINE CR1 3426 3708 -781 1 902 207 322 46 0 chr6 41611297 41611384 -107905653 + MIRb SINE MIR 91 181 -87 1 902 24 0 0 0 chr6 41612000 41612024 -107905013 + AT_rich Low_complexity Low_complexity 1 24 0 1 902 1287 129 118 10 chr6 41612052 41612256 -107904781 - URR1A DNA MER1_type 0 226 1 1 902 297 315 0 0 chr6 41612306 41612379 -107904658 + ID_B1 SINE B4 85 157 -67 1 902 291 54 0 0 chr6 41612661 41612698 -107904339 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 902 186 43 0 0 chr6 41612878 41612901 -107904136 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 902 759 130 0 0 chr6 41613771 41613894 -107903143 + (TCTG)n Simple_repeat Simple_repeat 2 124 0 1 902 255 79 0 0 chr6 41613924 41613962 -107903075 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1 902 644 254 7 14 chr6 41613963 41614103 -107902934 - B1F1 SINE Alu -9 140 2 1 902 203 367 32 40 chr6 41614375 41614500 -107902537 + L2c LINE L2 3092 3215 -172 1 902 223 286 95 0 chr6 41615741 41615804 -107901233 - PB1D7 SINE Alu -21 99 31 1 902 207 0 0 0 chr6 41615839 41615862 -107901175 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 902 607 86 0 0 chr6 41616038 41616119 -107900918 + B2_Mm2 SINE B2 2 82 -113 1 902 326 283 21 11 chr6 41616119 41616131 -107900906 + RSINE1 SINE B4 3 96 -69 1 902 282 183 0 0 chr6 41616211 41616282 -107900755 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 1 902 350 248 26 68 chr6 41616977 41617094 -107899943 + MER5A1 DNA MER1_type 36 147 -19 1 902 277 338 18 18 chr6 41617368 41617531 -107899506 + L2 LINE L2 2582 2744 -675 1 902 373 306 0 43 chr6 41617615 41617731 -107899306 + B1F1 SINE Alu 4 114 -35 1 902 405 39 0 0 chr6 41618348 41618399 -107898638 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 902 309 336 37 0 chr6 41618607 41618741 -107898296 - MER5B DNA MER1_type -2 176 38 1 902 3429 188 31 21 chr6 41621884 41622556 -107894481 + Lx5 LINE L1 6372 7050 0 1 902 412 194 18 9 chr6 41622589 41622698 -107894339 + GA-rich Low_complexity Low_complexity 1 110 0 1 902 908 130 6 17 chr6 41622678 41622700 -107894337 + polypurine Low_complexity Low_complexity 3 24 0 1 902 1005 109 23 6 chr6 41622700 41622875 -107894162 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1 902 908 130 6 17 chr6 41622875 41623032 -107894005 + GA-rich Low_complexity Low_complexity 25 179 0 1 902 233 135 19 0 chr6 41623899 41623951 -107893086 + GA-rich Low_complexity Low_complexity 1 53 0 1 902 461 151 12 0 chr6 41624750 41624836 -107892201 + CT-rich Low_complexity Low_complexity 4 90 0 1 902 689 0 12 0 chr6 41625621 41625702 -107891335 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 902 3337 260 85 23 chr6 41626562 41627562 -107889475 + Lx9 LINE L1 6583 7644 0 1 902 1047 139 0 0 chr6 41627731 41627911 -107889126 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 902 378 0 0 0 chr6 41628050 41628092 -107888945 + (A)n Simple_repeat Simple_repeat 1 42 0 1 902 1569 144 32 143 chr6 41628199 41628462 -107888575 - RMER17C LTR ERVK 0 410 187 1 902 879 61 8 15 chr6 41628462 41628595 -107888442 + (GAA)n Simple_repeat Simple_repeat 3 134 0 1 902 1569 144 32 143 chr6 41628595 41628669 -107888368 - RMER17C LTR ERVK -224 186 118 1 902 1206 95 0 0 chr6 41628669 41628817 -107888220 + B1_Mus1 SINE Alu 1 148 0 1 902 1569 144 32 143 chr6 41628817 41628939 -107888098 - RMER17C LTR ERVK -293 117 1 1 902 348 260 57 9 chr6 41629671 41629776 -107887261 - MER45A DNA Tip100 -23 155 46 1 902 234 194 0 0 chr6 41632413 41632480 -107884557 + T-rich Low_complexity Low_complexity 1 67 0 1 902 244 45 21 43 chr6 41633133 41633180 -107883857 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 1 902 350 234 52 0 chr6 41633566 41633643 -107883394 - ID4_ SINE ID 0 83 3 1 902 420 239 57 50 chr6 41633660 41633801 -107883236 - B1F1 SINE Alu -6 143 2 1 902 305 343 99 68 chr6 41635939 41636202 -107880835 + B4 SINE B4 5 275 -17 1 902 471 35 0 0 chr6 41636250 41636307 -107880730 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 902 812 178 0 6 chr6 41637059 41637240 -107879797 + GA-rich Low_complexity Low_complexity 1 180 0 1 902 319 369 23 0 chr6 41640179 41640309 -107876728 + MIR SINE MIR 29 161 -101 1 902 24 0 0 0 chr6 41640950 41640974 -107876063 + AT_rich Low_complexity Low_complexity 1 24 0 1 902 592 290 150 32 chr6 41640978 41641231 -107875806 + B4A SINE B4 2 284 -8 1 902 297 109 0 0 chr6 41641278 41641324 -107875713 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 902 226 294 94 0 chr6 41642160 41642245 -107874792 + MIRc SINE MIR 134 226 -42 1 902 212 342 44 26 chr6 41642322 41642436 -107874601 + L3 LINE CR1 3351 3466 -1023 1 902 555 16 0 0 chr6 41642575 41642639 -107874398 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 902 371 280 99 10 chr6 41642759 41642860 -107874177 + PB1D10 SINE Alu 2 111 -6 1 902 237 270 40 13 chr6 41643879 41643954 -107873083 + MER58C DNA MER1_type 136 212 -3 1 902 738 214 185 11 chr6 41644013 41644197 -107872840 + B3 SINE B2 1 216 0 1 902 615 257 36 0 chr6 41644900 41645040 -107871997 + B1_Mur2 SINE Alu 1 145 -4 1 902 352 298 107 85 chr6 41645218 41645489 -107871548 - B4A SINE B4 -11 281 5 2 902 8722 32 8 0 chr6 41646160 41647128 -107869909 + L1Md_F2 LINE L1 5605 6580 -2 2 902 388 150 0 17 chr6 41647814 41647929 -107869108 + CT-rich Low_complexity Low_complexity 2 114 0 2 902 559 286 22 8 chr6 41648567 41648701 -107868336 + RSINE1 SINE B4 2 137 -28 2 902 264 122 0 0 chr6 41648734 41648775 -107868262 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2 902 326 248 99 28 chr6 41649444 41649585 -107867452 + MER96B DNA hAT 12 162 -255 2 902 21 36 0 0 chr6 41649725 41649753 -107867284 + AT_rich Low_complexity Low_complexity 1 28 0 2 902 363 260 38 8 chr6 41649818 41649950 -107867087 - MER96B DNA hAT -256 161 26 2 902 207 0 0 0 chr6 41650127 41650150 -107866887 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 902 333 0 0 0 chr6 41651132 41651169 -107865868 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 902 394 265 30 62 chr6 41654673 41654814 -107862223 + MIRc SINE MIR 41 182 -86 2 902 408 266 43 17 chr6 41655661 41655776 -107861261 + RSINE1 SINE B4 2 119 -46 2 902 677 311 31 0 chr6 41655777 41655938 -107861099 + B3A SINE B2 1 166 -32 2 902 321 26 0 0 chr6 41655941 41655979 -107861058 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 902 192 373 18 65 chr6 41656721 41656890 -107860147 - MIR SINE MIR -56 206 46 2 902 220 226 48 0 chr6 41657101 41657163 -107859874 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 2 902 457 283 394 16 chr6 41657168 41657351 -107859686 - B4A SINE B4 -14 278 27 2 902 495 0 0 0 chr6 41657780 41657835 -107859202 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 902 336 24 0 0 chr6 41657835 41657875 -107859162 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 902 22 0 0 0 chr6 41657963 41657985 -107859052 + AT_rich Low_complexity Low_complexity 1 22 0 2 902 285 354 39 48 chr6 41658080 41658184 -107858853 + PB1D10 SINE Alu 1 103 -14 2 902 298 252 8 8 chr6 41658245 41658377 -107858660 + (TA)n Simple_repeat Simple_repeat 2 133 0 2 902 222 250 16 0 chr6 41658437 41658501 -107858536 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 902 499 335 111 52 chr6 41658804 41659075 -107857962 - B4 SINE B4 -2 290 4 2 902 26 53 0 17 chr6 41659296 41659322 -107857715 + AT_rich Low_complexity Low_complexity 1 26 0 2 902 484 313 0 0 chr6 41659322 41659437 -107857600 - PB1D10 SINE Alu -2 115 1 2 902 26 53 0 17 chr6 41659437 41659468 -107857569 + AT_rich Low_complexity Low_complexity 1 31 0 2 902 1036 328 99 12 chr6 41659522 41660019 -107857018 - Lx8 LINE L1 -84 7389 6850 2 902 4700 96 61 2 chr6 41660021 41660659 -107856378 - Lx2 LINE L1 0 6997 6322 2 902 281 255 113 0 chr6 41660687 41660793 -107856244 - L1MA8 LINE L1 -19 6272 6155 2 902 1638 341 97 36 chr6 41660851 41660976 -107856061 - Lx8 LINE L1 -2 7471 7360 2 902 912 19 0 0 chr6 41660976 41661082 -107855955 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 2 902 1638 341 97 36 chr6 41661082 41661945 -107855092 - Lx8 LINE L1 -114 7359 6423 2 902 682 319 13 84 chr6 41662274 41662500 -107854537 - B4 SINE B4 -66 226 17 2 902 5224 154 72 56 chr6 41662503 41664521 -107852516 - L1_Mus2 LINE L1 0 6997 5145 2 902 267 273 10 39 chr6 41664523 41664626 -107852411 - L1M3 LINE L1 -816 5324 5225 2 902 25 51 0 0 chr6 41664630 41664669 -107852368 + AT_rich Low_complexity Low_complexity 1 39 0 2 902 9083 118 50 6 chr6 41664671 41666661 -107850376 - Lx3B LINE L1 -4 6969 4905 2 902 7310 141 35 10 chr6 41666646 41667378 -107849659 + L1_Mur1 LINE L1 3376 4126 -1760 2 902 306 0 0 0 chr6 41667378 41667412 -107849625 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 902 369 0 0 0 chr6 41667412 41667452 -107849585 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 902 7082 141 35 10 chr6 41667452 41667990 -107849047 + L1_Mur1 LINE L1 4127 4678 -1208 2 902 259 178 62 0 chr6 41667985 41668058 -107848979 - L1M3 LINE L1 -978 5165 5087 2 902 440 299 0 43 chr6 41668240 41668380 -107848657 + B1F1 SINE Alu 10 143 -6 2 902 345 47 0 0 chr6 41668695 41668738 -107848299 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 2 902 717 300 9 4 chr6 41668848 41669079 -107847958 + L1MB3 LINE L1 5873 6104 -79 2 902 24 0 0 0 chr6 41669108 41669132 -107847905 + AT_rich Low_complexity Low_complexity 1 24 0 2 902 296 191 181 53 chr6 41669243 41669337 -107847700 - PB1D10 SINE Alu 0 117 12 2 902 384 82 0 0 chr6 41669367 41669428 -107847609 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 902 549 44 0 0 chr6 41669442 41669510 -107847527 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 902 196 285 44 48 chr6 41669813 41669971 -107847066 + MIR SINE MIR 84 258 -10 2 902 528 295 63 21 chr6 41671251 41671393 -107845644 - B3 SINE B2 -61 155 8 2 902 6374 1 0 0 chr6 41671852 41672555 -107844482 - L1Md_A LINE L1 0 6582 5880 2 902 13120 173 63 17 chr6 41672652 41678436 -107838601 - Lx2B LINE L1 0 7000 563 2 902 868 218 6 0 chr6 41678438 41678608 -107838429 - ORR1A4 LTR MaLR -43 286 116 2 902 293 340 80 27 chr6 41679217 41679441 -107837596 + L1MD1 LINE L1 113 348 -6285 2 902 410 273 149 83 chr6 41679915 41680053 -107836984 + L1MD1 LINE L1 1562 1705 -4928 2 902 832 227 130 0 chr6 41680053 41680238 -107836799 + B3 SINE B2 2 210 -6 2 902 410 273 149 83 chr6 41680238 41680735 -107836302 + L1MD1 LINE L1 1706 2239 -4394 2 902 498 326 0 7 chr6 41680735 41680883 -107836154 + RSINE1 SINE B4 1 147 -18 2 112 261 57 0 0 chr6 41680891 41680926 -107836111 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 903 1089 107 59 0 chr6 41681081 41681250 -107835787 + B2_Mm1t SINE B2 2 180 -13 2 903 384 77 257 64 chr6 41681319 41681459 -107835578 + B2_Mm2 SINE B2 29 195 0 2 903 29 60 0 0 chr6 41681552 41681602 -107835435 + AT_rich Low_complexity Low_complexity 1 50 0 2 903 2135 98 25 3 chr6 41681638 41681956 -107835081 - IAPEY2_LTR LTR ERVK 0 357 33 2 903 281 287 102 0 chr6 41681963 41682120 -107834917 + L1MD1 LINE L1 2583 2755 -3782 2 903 218 176 50 50 chr6 41682121 41682181 -107834856 + B1_Mur3 SINE Alu 90 149 0 2 903 258 258 48 0 chr6 41682192 41682254 -107834783 + Lx8 LINE L1 7229 7293 -180 2 903 367 318 0 9 chr6 41682309 41682417 -107834620 + PB1D10 SINE Alu 1 107 -10 2 903 248 271 93 0 chr6 41682443 41682561 -107834476 + L1MD1 LINE L1 5825 5953 -680 2 903 956 310 48 14 chr6 41682591 41683091 -107833946 + L1MD1 LINE L1 6072 6588 -45 2 903 560 294 19 12 chr6 41683701 41683863 -107833174 + RSINE1 SINE B4 3 165 0 2 903 198 0 0 0 chr6 41684026 41684048 -107832989 + (TTTTTA)n Simple_repeat Simple_repeat 1 22 0 2 903 1090 262 98 3 chr6 41684423 41684760 -107832277 + ORR1D2 LTR MaLR 2 370 0 2 903 190 355 119 68 chr6 41686373 41686491 -107830546 - L2 LINE L2 -614 2805 2682 2 903 253 262 28 18 chr6 41686505 41686614 -107830423 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 2 903 188 266 15 30 chr6 41686773 41686839 -107830198 - L2 LINE L2 -954 2465 2401 2 903 351 0 0 0 chr6 41687032 41687071 -107829966 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 903 1829 77 11 4 chr6 41687181 41687442 -107829595 - L1_Mus3 LINE L1 -4 6634 6372 2 903 456 360 82 22 chr6 41687882 41688237 -107828800 - L1M5 LINE L1 -2902 3244 2869 2 903 595 281 22 58 chr6 41689091 41689420 -107827617 - ORR1E LTR MaLR 0 379 55 2 903 2207 295 109 95 chr6 41689422 41689720 -107827317 - MTE-int LTR MaLR -19 1561 1283 2 903 1229 128 25 5 chr6 41689720 41689924 -107827113 + Lx3_Mus LINE L1 6794 7001 -8 2 903 2207 295 109 95 chr6 41689924 41690154 -107826883 - MTE-int LTR MaLR -298 1282 1077 2 903 314 23 23 0 chr6 41690154 41690197 -107826840 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 903 2207 316 93 107 chr6 41690197 41691152 -107825885 - MTE-int LTR MaLR -504 1076 2 2 903 264 184 0 0 chr6 41691183 41691232 -107825805 + ID_B1 SINE B4 111 159 -65 2 903 848 176 102 0 chr6 41691239 41691415 -107825622 + RLTR9A LTR ERVK 3 196 -172 2 903 616 307 29 48 chr6 41691389 41691598 -107825439 - ORR1E LTR MaLR -149 210 6 2 903 31 0 0 0 chr6 41692314 41692345 -107824692 + AT_rich Low_complexity Low_complexity 1 31 0 2 903 415 248 107 19 chr6 41692345 41692448 -107824589 - B1F SINE Alu -2 147 36 2 903 246 327 45 91 chr6 41694948 41695190 -107821847 - L1MC LINE L1 -2043 5839 5609 2 903 732 69 10 0 chr6 41695985 41696086 -107820951 + L1_Mm LINE L1 5314 5415 -468 2 903 21 36 0 0 chr6 41696345 41696373 -107820664 + AT_rich Low_complexity Low_complexity 1 28 0 2 903 29626 105 33 8 chr6 41696398 41702361 -107814676 - L1_Mus1 LINE L1 0 6570 412 2 903 212 179 35 18 chr6 41702601 41702658 -107814379 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 903 301 314 35 0 chr6 41702972 41703058 -107813979 - B1F1 SINE Alu -55 94 6 2 903 206 0 0 65 chr6 41703437 41703468 -107813569 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2 903 1157 128 11 11 chr6 41703468 41703650 -107813387 - B2_Mm2 SINE B2 -12 183 2 2 903 496 65 13 13 chr6 41703650 41703728 -107813309 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 2 903 275 131 0 16 chr6 41703749 41703811 -107813226 - Lx4B LINE L1 -38 7020 6960 2 903 2625 133 5 5 chr6 41704058 41704480 -107812557 - Lx2 LINE L1 0 6997 6576 2 903 567 29 0 0 chr6 41705672 41705741 -107811296 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 2 903 2436 114 0 45 chr6 41706291 41706667 -107810370 - RLTR10D LTR ERVK 0 359 1 2 903 269 383 32 13 chr6 41707413 41707569 -107809468 + LTR16B2 LTR ERVL 1 159 -303 2 903 502 246 42 0 chr6 41708670 41708788 -107808249 + B4 SINE B4 12 134 -158 2 903 847 262 2 3 chr6 41709323 41709510 -107807527 - B3 SINE B2 0 198 15 2 903 23 33 0 0 chr6 41710408 41710438 -107806599 + AT_rich Low_complexity Low_complexity 1 30 0 2 903 322 255 86 29 chr6 41710452 41710557 -107806480 - PB1D10 SINE Alu 0 117 7 2 903 239 274 8 136 chr6 41710468 41710586 -107806451 - B4A SINE B4 -122 170 68 2 903 664 302 52 76 chr6 41710941 41711192 -107805845 - MER2 DNA MER2_type -20 325 81 2 903 545 258 78 0 chr6 41711489 41711617 -107805420 + RSINE1 SINE B4 23 160 -5 2 903 191 175 50 0 chr6 41712180 41712220 -107804817 + L3 LINE CR1 3982 4023 -466 2 903 265 301 161 78 chr6 41712553 41712733 -107804304 + MIRb SINE MIR 9 203 -65 3 903 392 297 32 99 chr6 41713249 41713597 -107803440 - Tigger5 DNA MER2_type -95 2311 2191 3 903 378 0 0 0 chr6 41713746 41713788 -107803249 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 903 736 287 69 118 chr6 41714298 41714528 -107802509 - MTE2a LTR MaLR -5 374 131 3 903 969 98 0 0 chr6 41714528 41714661 -107802376 + B1_Mus2 SINE Alu 2 134 -13 3 903 1280 59 0 6 chr6 41714662 41714833 -107802204 + (GAA)n Simple_repeat Simple_repeat 2 171 0 3 903 736 287 69 118 chr6 41714833 41714991 -107802046 - MTE2a LTR MaLR -249 130 3 3 903 247 196 0 19 chr6 41715449 41715501 -107801536 + CT-rich Low_complexity Low_complexity 1 51 0 3 903 195 348 114 18 chr6 41715744 41715858 -107801179 - MIRb SINE MIR -130 138 14 3 903 5711 214 86 14 chr6 41716590 41716620 -107800417 - Lx5 LINE L1 -8 7042 7016 3 903 1278 154 247 17 chr6 41716620 41716911 -107800126 + RLTR15 LTR ERVK 2 359 0 3 903 5711 214 86 14 chr6 41716911 41718213 -107798824 - Lx5 LINE L1 -35 7015 5615 3 903 1102 251 23 110 chr6 41718572 41718962 -107798075 + MTE2a LTR MaLR 14 369 -10 3 903 372 345 47 38 chr6 41719004 41719215 -107797822 - HERV16-int LTR ERVL -3112 1884 1672 3 903 432 0 0 0 chr6 41720148 41720196 -107796841 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 903 432 231 26 124 chr6 41720989 41721142 -107795895 + MT2B LTR ERVL 127 264 -337 3 903 1015 67 0 0 chr6 41721042 41721176 -107795861 + B1_Mus1 SINE Alu 14 147 -1 3 903 279 0 0 0 chr6 41721176 41721207 -107795830 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 903 1256 96 10 60 chr6 41723023 41723223 -107793814 + B2_Mm2 SINE B2 1 190 -5 3 903 928 103 0 7 chr6 41723302 41723448 -107793589 - L1Md_F2 LINE L1 -592 5990 5846 3 903 4884 41 3 0 chr6 41723448 41724037 -107793000 + L1Md_F2 LINE L1 5988 6578 -4 3 903 293 277 146 27 chr6 41724096 41724301 -107792736 + L1ME2 LINE L1 1815 2035 -4973 3 903 487 96 12 12 chr6 41724432 41724516 -107792521 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 903 27 29 0 0 chr6 41726603 41726637 -107790400 + AT_rich Low_complexity Low_complexity 1 34 0 3 903 569 323 113 27 chr6 41726688 41727959 -107789078 + L1ME2 LINE L1 4247 5627 -1379 3 903 302 298 137 32 chr6 41728059 41728402 -107788635 + L1ME2 LINE L1 6365 6743 -281 3 903 248 53 0 26 chr6 41728803 41728842 -107788195 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 903 1001 297 11 43 chr6 41728850 41729131 -107787906 - B4A SINE B4 -20 272 1 3 903 6724 62 15 0 chr6 41729475 41730353 -107786684 + L1_Mus1 LINE L1 5676 6566 -1 3 903 561 115 0 0 chr6 41730566 41730653 -107786384 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 3 903 504 0 0 0 chr6 41730695 41730751 -107786286 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 903 2025 114 20 0 chr6 41730753 41731051 -107785986 + ORR1A2 LTR MaLR 24 327 0 3 903 1002 171 0 0 chr6 41731389 41731629 -107785408 + (CATA)n Simple_repeat Simple_repeat 1 240 0 3 903 281 293 49 0 chr6 41731666 41731748 -107785289 - PB1 SINE Alu -6 121 36 3 903 232 351 101 31 chr6 41732629 41732788 -107784249 - MIRc SINE MIR -10 198 29 3 903 1574 0 0 0 chr6 41732910 41733091 -107783946 - L1_Mm LINE L1 -837 5046 4866 3 903 5371 8 0 0 chr6 41733091 41733730 -107783307 + L1Md_T LINE L1 5990 6582 0 3 903 2760 258 76 14 chr6 41733802 41734035 -107783002 + Lx8 LINE L1 6575 6828 -645 3 903 324 70 0 0 chr6 41734035 41734078 -107782959 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 903 2760 258 76 14 chr6 41734078 41734688 -107782349 + Lx8 LINE L1 6829 7469 -4 3 903 747 87 0 0 chr6 41735804 41735908 -107781129 + (TA)n Simple_repeat Simple_repeat 2 105 0 3 903 1708 170 6 3 chr6 41735908 41736227 -107780810 - Lx LINE L1 -25 6629 6310 3 903 218 324 133 29 chr6 41736579 41736684 -107780353 - MIR SINE MIR -112 150 35 3 903 542 101 11 0 chr6 41737150 41737156 -107779881 + (TC)n Simple_repeat Simple_repeat 1 6 0 3 903 612 40 0 0 chr6 41737156 41737231 -107779806 + (TTCC)n Simple_repeat Simple_repeat 1 75 0 3 903 542 101 11 0 chr6 41737231 41737313 -107779724 + (TC)n Simple_repeat Simple_repeat 2 84 0 3 903 349 333 0 10 chr6 41738196 41738299 -107778738 + ID_B1 SINE B4 112 213 -11 3 903 315 71 0 0 chr6 41738299 41738341 -107778696 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 3 903 932 65 10 7 chr6 41739013 41739159 -107777878 - B1_Mm SINE Alu 0 149 2 3 903 660 242 32 27 chr6 41739159 41739346 -107777691 + Lx5 LINE L1 6859 7046 -4 3 903 246 191 29 0 chr6 41739427 41739495 -107777542 - Lx5 LINE L1 -29 7021 6952 3 903 4414 95 44 63 chr6 41739610 41740375 -107776662 + RMER17A LTR ERVK 1 751 0 3 903 499 355 0 0 chr6 41740650 41740805 -107776232 + RSINE1 SINE B4 3 157 -8 3 903 1258 176 14 9 chr6 41741544 41741762 -107775275 - URR1B DNA MER1_type 0 225 7 3 903 5845 147 68 34 chr6 41742079 41743157 -107773880 - RLTR13D3 LTR ERVK 0 1114 1 3 903 4512 179 31 11 chr6 41743910 41744740 -107772297 + Lx2A1 LINE L1 6148 6994 -14 3 903 570 96 0 31 chr6 41744837 41744936 -107772101 + B1_Mus2 SINE Alu 21 136 -11 3 903 222 184 0 0 chr6 41744936 41744974 -107772063 + G-rich Low_complexity Low_complexity 1 38 0 3 903 514 237 9 0 chr6 41744974 41745088 -107771949 - Lx7 LINE L1 -437 7259 7145 3 903 22 70 0 0 chr6 41745474 41745517 -107771520 + AT_rich Low_complexity Low_complexity 1 43 0 3 903 1040 72 72 0 chr6 41745778 41745916 -107771121 + B1_Mus1 SINE Alu 1 148 0 3 903 639 121 0 0 chr6 41745934 41746033 -107771004 + (GGA)n Simple_repeat Simple_repeat 2 100 0 3 903 273 98 0 0 chr6 41746031 41746072 -107770965 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 3 903 234 0 0 0 chr6 41746312 41746338 -107770699 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 903 1962 130 15 27 chr6 41746634 41746967 -107770070 - Lx LINE L1 -6 6648 6320 3 903 2629 215 46 12 chr6 41747355 41748009 -107769028 + Lx2B LINE L1 6324 6999 -1 3 903 289 313 10 39 chr6 41748309 41748412 -107768625 + MLT1D LTR MaLR 355 454 -51 3 903 2083 184 5 64 chr6 41748478 41748897 -107768140 + ORR1B1 LTR MaLR 1 394 0 3 903 1289 267 112 18 chr6 41749027 41749481 -107767556 - Lx8 LINE L1 -13 7460 6964 3 903 39199 12 0 6 chr6 41751166 41757970 -107759067 - L1Md_A LINE L1 0 6582 1 3 903 480 256 209 0 chr6 41758052 41758181 -107758856 + B3A SINE B2 1 156 -42 3 903 238 294 0 0 chr6 41758338 41758406 -107758631 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 903 21 36 0 0 chr6 41758466 41758494 -107758543 + AT_rich Low_complexity Low_complexity 1 28 0 3 903 759 248 63 45 chr6 41758706 41759040 -107757997 - RLTR15 LTR ERVK -15 344 5 3 903 27 0 0 0 chr6 41759140 41759167 -107757870 + AT_rich Low_complexity Low_complexity 1 27 0 3 903 6651 99 8 4 chr6 41759167 41760097 -107756940 - Lx3_Mus LINE L1 -8 7001 6069 3 903 403 148 0 0 chr6 41760098 41760159 -107756878 + 4.5SRNA scRNA scRNA 5 65 -29 3 903 1754 62 0 4 chr6 41760163 41760389 -107756648 - L1_Mus1 LINE L1 0 6567 6343 3 903 3051 69 0 5 chr6 41760389 41760797 -107756240 + L1_Mm LINE L1 5332 5737 -146 3 903 1336 46 6 0 chr6 41761520 41761693 -107755344 - L1_Mus1 LINE L1 -140 6427 6254 3 903 952 69 0 0 chr6 41761693 41761823 -107755214 + L1_Mus1 LINE L1 6438 6567 0 3 903 1266 286 79 11 chr6 41762937 41763403 -107753634 + Lx8 LINE L1 6832 7329 -144 3 903 873 228 25 45 chr6 41763429 41763627 -107753410 + B3 SINE B2 19 212 -4 3 903 266 263 0 50 chr6 41763653 41763773 -107753264 + Lx8 LINE L1 7353 7466 -7 3 903 383 315 83 0 chr6 41763934 41764042 -107752995 - MER63D DNA AcHobo -678 383 267 3 903 368 392 41 20 chr6 41765326 41765571 -107751466 - RMER15 LTR ERVL -2 573 324 3 903 189 107 0 0 chr6 41766294 41766322 -107750715 + (TTG)n Simple_repeat Simple_repeat 1 28 0 3 903 492 0 44 0 chr6 41766894 41766962 -107750075 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 903 342 67 0 0 chr6 41766962 41767006 -107750031 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 903 434 227 92 62 chr6 41767140 41767288 -107749749 - MER5A1 DNA MER1_type 0 166 18 3 903 294 125 0 0 chr6 41769588 41769636 -107747401 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 903 192 77 0 0 chr6 41769773 41769799 -107747238 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 903 2238 231 27 4 chr6 41769801 41770322 -107746715 - Lx2B LINE L1 -8 6992 6460 3 903 4964 137 70 25 chr6 41770316 41771202 -107745835 - Lx2 LINE L1 -273 6724 5788 3 903 4071 67 4 2 chr6 41771202 41771727 -107745310 - L1_Mus1 LINE L1 0 6567 6042 3 903 4964 137 70 25 chr6 41771727 41771817 -107745220 - Lx2 LINE L1 -1210 5787 5704 3 903 510 61 0 0 chr6 41771881 41771947 -107745090 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 903 893 272 30 53 chr6 41777336 41777635 -107739402 + B4 SINE B4 1 292 0 3 903 476 195 22 22 chr6 41777647 41777825 -107739212 + (CATA)n Simple_repeat Simple_repeat 3 180 0 3 903 188 145 28 42 chr6 41777818 41777890 -107739147 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 3 903 665 85 232 56 chr6 41777985 41778110 -107738927 + B1_Mus1 SINE Alu 2 148 0 3 903 210 392 23 23 chr6 41778218 41778346 -107738691 - L4 LINE RTE -1729 300 173 3 903 360 200 12 0 chr6 41779151 41779231 -107737806 + Lx3B LINE L1 6891 6971 -2 3 903 338 364 0 0 chr6 41780670 41780769 -107736268 - B3 SINE B2 -116 100 2 3 903 4519 88 11 2 chr6 41780862 41781486 -107735551 - Lx3_Mus LINE L1 -16 6993 6364 3 903 437 296 28 0 chr6 41781608 41781716 -107735321 + ID_B1 SINE B4 91 201 -23 3 903 415 270 60 53 chr6 41781716 41781741 -107735296 + B1F SINE Alu 10 143 -6 3 903 207 342 0 14 chr6 41781741 41781815 -107735222 + GA-rich Low_complexity Low_complexity 2 74 0 3 903 797 99 8 0 chr6 41782020 41782141 -107734896 + (GAAA)n Simple_repeat Simple_repeat 2 123 0 3 903 180 0 0 0 chr6 41782493 41782513 -107734524 + (GGAAA)n Simple_repeat Simple_repeat 1 20 0 4 903 1053 225 134 48 chr6 41783466 41783756 -107733281 - MTD LTR MaLR -8 411 97 4 903 245 337 43 0 chr6 41783892 41783984 -107733053 + ID_B1 SINE B4 77 172 -52 4 903 351 262 67 10 chr6 41783904 41784008 -107733029 + PB1D10 SINE Alu 8 117 0 4 903 669 283 93 13 chr6 41784116 41784502 -107732535 - L1MA7 LINE L1 -50 6241 5805 4 903 674 157 0 0 chr6 41784505 41784620 -107732417 - L1_Mur2 LINE L1 -682 5195 5081 4 903 3405 132 72 0 chr6 41784622 41785177 -107731860 + Lx2 LINE L1 6403 6997 0 4 903 10072 135 18 11 chr6 41785315 41786788 -107730249 + L1VL4 LINE L1 482 1960 -1599 4 903 216 0 0 0 chr6 41786788 41786812 -107730225 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 4 903 10072 122 21 13 chr6 41786812 41787519 -107729518 + L1VL4 LINE L1 1961 2678 -881 4 903 8854 92 16 2 chr6 41787521 41788922 -107728115 - MusHAL1 LINE L1 -352 2360 941 4 903 259 45 68 0 chr6 41789039 41789083 -107727954 + (TATG)n Simple_repeat Simple_repeat 3 49 0 4 903 467 75 83 0 chr6 41790557 41790677 -107726360 + (TA)n Simple_repeat Simple_repeat 2 131 0 4 903 4877 90 0 5 chr6 41790923 41791734 -107725303 - L1Md_F2 LINE L1 -4511 1372 562 4 903 29070 83 2 6 chr6 41791719 41795994 -107721043 + L1Md_F2 LINE L1 1330 5585 -298 4 903 7101 88 3 13 chr6 41795995 41796985 -107720052 + L1Md_F2 LINE L1 5587 6566 -16 4 903 1106 72 0 0 chr6 41798535 41798674 -107718363 + B1_Mus1 SINE Alu 3 141 -7 4 903 207 0 0 0 chr6 41798677 41798700 -107718337 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 903 790 201 32 70 chr6 41799352 41799539 -107717498 - URR1B DNA MER1_type -39 186 7 4 903 220 298 71 0 chr6 41800026 41800110 -107716927 - MIRc SINE MIR -52 216 127 4 903 253 312 157 48 chr6 41800484 41800733 -107716304 - Charlie4a DNA MER1_type -231 277 2 4 903 38 39 0 0 chr6 41800788 41800840 -107716197 + AT_rich Low_complexity Low_complexity 1 52 0 4 903 457 310 24 72 chr6 41802213 41802380 -107714657 + B4 SINE B4 3 161 -131 4 903 29 28 0 0 chr6 41803973 41804009 -107713028 + AT_rich Low_complexity Low_complexity 1 36 0 4 903 221 235 0 0 chr6 41804514 41804565 -107712472 + CT-rich Low_complexity Low_complexity 1 51 0 4 903 398 284 56 31 chr6 41805028 41805188 -107711849 + ORR1D2 LTR MaLR 205 368 -2 4 903 21 71 0 0 chr6 41805477 41805519 -107711518 + AT_rich Low_complexity Low_complexity 1 42 0 4 903 3080 283 22 35 chr6 41806795 41807032 -107710005 - Lx7 LINE L1 0 7460 7217 4 903 180 0 0 0 chr6 41807032 41807052 -107709985 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 903 3428 257 10 66 chr6 41807052 41808272 -107708765 - Lx7 LINE L1 -244 7216 6088 4 904 314 324 67 0 chr6 41812633 41812738 -107704299 + B3A SINE B2 86 197 -1 4 904 951 118 7 0 chr6 41815953 41816105 -107700932 - L1Md_F2 LINE L1 -1 6581 6429 4 904 2521 84 0 0 chr6 41816106 41816451 -107700586 + L1_Mus1 LINE L1 6063 6407 -160 4 904 3224 66 12 0 chr6 41816507 41816931 -107700106 - L1Md_F2 LINE L1 0 6582 6154 4 904 983 136 30 0 chr6 41817129 41817298 -107699739 - Lx3_Mus LINE L1 -16 6993 6820 4 904 254 132 19 0 chr6 41817782 41817835 -107699202 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 4 904 30939 27 2 4 chr6 41817843 41820142 -107696895 - L1Md_T LINE L1 -1 6581 4279 4 904 5070 65 15 1 chr6 41820142 41820807 -107696230 - L1Md_F2 LINE L1 -12 6570 5897 4 904 30939 24 1 5 chr6 41820807 41823049 -107693988 - L1Md_T LINE L1 -1605 4278 2051 4 904 39204 18 1 4 chr6 41823050 41831288 -107685749 - L1Md_A LINE L1 0 6582 1 4 904 6677 38 1 23 chr6 41831289 41832915 -107684122 - L1Md_A LINE L1 -3819 2064 481 4 904 207 0 0 0 chr6 41834070 41834093 -107682944 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 904 8059 107 31 2 chr6 41834270 41835455 -107681582 - Lx3_Mus LINE L1 -8 7001 5782 4 904 5338 96 5 0 chr6 41835461 41836283 -107680754 + L1_Mur1 LINE L1 1740 2565 -3321 4 904 210 143 0 0 chr6 41836475 41836510 -107680527 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 904 249 0 0 0 chr6 41836653 41836682 -107680355 + L1Md_F2 LINE L1 6291 6319 -263 4 904 252 0 0 0 chr6 41836682 41836710 -107680327 + (TATG)n Simple_repeat Simple_repeat 2 29 0 4 904 1580 192 117 8 chr6 41836733 41837127 -107679910 - Lx5 LINE L1 -740 6310 5874 4 904 1137 133 108 0 chr6 41837121 41837324 -107679713 - L1_Mm LINE L1 -302 5581 5357 4 904 7128 52 12 4 chr6 41837338 41838279 -107678758 - L1Md_F2 LINE L1 -12 6570 5623 4 904 550 134 0 0 chr6 41838266 41838363 -107678674 - L1_Mur2 LINE L1 -513 5364 5268 4 904 6917 173 40 4 chr6 41838385 41839746 -107677291 + Lx2 LINE L1 5587 6996 -1 4 904 3461 219 13 13 chr6 41843041 41843787 -107673250 - Lx2B LINE L1 -5 6995 6250 4 904 404 361 68 53 chr6 41844795 41845061 -107671976 + B4 SINE B4 2 271 -21 4 904 2911 112 9 2 chr6 41845394 41845832 -107671205 - L1_Mus3 LINE L1 0 6638 6198 4 904 1639 68 157 7 chr6 41845832 41846278 -107670759 + L1_Mus3 LINE L1 5699 6211 -427 4 904 193 120 0 57 chr6 41847042 41847095 -107669942 + T-rich Low_complexity Low_complexity 2 51 0 4 904 2155 149 31 13 chr6 41847097 41847478 -107669559 - Lx2B LINE L1 -77 6923 6536 4 904 2855 168 49 30 chr6 41849233 41849762 -107667275 + RLTR26 LTR ERVK 15 553 -89 4 904 6653 188 46 6 chr6 41849943 41852499 -107664538 + Lx5 LINE L1 4379 7050 0 4 904 987 231 76 13 chr6 41852651 41852954 -107664083 - MYSERV6-int LTR ERVK -272 8687 8366 4 904 27738 133 30 16 chr6 41852963 41859255 -107657782 - L1_Mus2 LINE L1 -3 6563 220 4 904 1032 156 0 0 chr6 41859285 41859465 -107657572 + CT-rich Low_complexity Low_complexity 1 180 0 4 904 1265 249 74 40 chr6 41859470 41860076 -107656961 - MYSERV-int LTR ERVK -624 5926 5300 4 904 357 228 43 83 chr6 41860079 41860215 -107656822 - RMER4A LTR ERVK -30 555 314 4 904 833 315 81 30 chr6 41860215 41860611 -107656426 - RMER20A LTR ERVK 0 516 101 4 904 192 125 0 0 chr6 41860612 41860644 -107656393 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 904 1797 321 28 24 chr6 41860697 41861692 -107655345 - MYSERV6-int LTR ERVK -3504 1756 532 4 904 604 213 28 63 chr6 41862850 41863105 -107653932 + RMER17C LTR ERVK 1 246 -164 4 904 189 0 0 0 chr6 41863105 41863126 -107653911 + (TTCTC)n Simple_repeat Simple_repeat 2 22 0 4 904 1222 183 24 24 chr6 41863126 41863457 -107653580 + RMER17C LTR ERVK 80 410 0 4 904 840 263 21 8 chr6 41863882 41864120 -107652917 + Lx7 LINE L1 7123 7363 -333 4 904 782 92 17 0 chr6 41864173 41864293 -107652744 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 4 904 394 226 0 11 chr6 41864303 41864397 -107652640 + Lx7 LINE L1 7363 7455 -241 4 904 384 274 10 10 chr6 41864628 41864731 -107652306 + Tigger9b DNA MER2_type 2 104 -520 4 904 319 21 0 40 chr6 41864829 41864879 -107652158 + (TTA)n Simple_repeat Simple_repeat 1 48 0 4 904 216 0 0 0 chr6 41864886 41864910 -107652127 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 904 1460 179 22 222 chr6 41864915 41865452 -107651585 + RLTR23 LTR ERV1 1 430 0 4 904 3892 134 0 6 chr6 41866034 41866678 -107650359 + L1_Mus1 LINE L1 4647 5286 -597 4 904 2560 52 2 189 chr6 41866678 41867155 -107649882 + RLTR10 LTR ERVK 1 388 -2 4 904 7054 75 13 1 chr6 41867156 41868428 -107648609 + L1_Mus1 LINE L1 5280 6566 -1 4 904 542 194 29 0 chr6 41869074 41869244 -107647793 + GA-rich Low_complexity Low_complexity 2 176 0 4 904 6608 160 20 3 chr6 41869289 41869886 -107647151 + L1_Mus4 LINE L1 4636 5233 -650 4 904 432 0 0 0 chr6 41869886 41869934 -107647103 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 904 6623 124 20 2 chr6 41869934 41871294 -107645743 + L1_Mus4 LINE L1 5234 6627 -9 4 904 518 335 54 58 chr6 41871294 41871554 -107645483 - MLT2D LTR ERVL -105 309 51 4 904 579 94 0 0 chr6 41873497 41873593 -107643444 + (TC)n Simple_repeat Simple_repeat 1 96 0 4 904 277 24 0 45 chr6 41874194 41874238 -107642799 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 4 904 8741 174 97 9 chr6 41874534 41876536 -107640501 + L1_Mur2 LINE L1 2554 4730 -1147 4 904 3018 50 10 10 chr6 41876582 41876969 -107640068 + RLTR10 LTR ERVK 1 387 -3 4 904 15920 23 4 13 chr6 41876984 41878946 -107638091 + RLTR10-int LTR ERVK 41 1984 -3 4 904 3066 50 10 0 chr6 41878948 41879331 -107637706 + RLTR10 LTR ERVK 1 387 -3 4 904 354 212 48 48 chr6 41879335 41879439 -107637598 + Lx LINE L1 4756 4859 -1024 4 904 2271 29 0 0 chr6 41879457 41879731 -107637306 + L1Md_F2 LINE L1 5313 5586 -297 4 904 8271 29 4 6 chr6 41879731 41880717 -107636320 + L1Md_F2 LINE L1 5587 6570 -12 4 904 2268 44 0 0 chr6 41880715 41880989 -107636048 + L1Md_F3 LINE L1 6297 6570 -14 4 904 201 74 0 0 chr6 41881005 41881032 -107636005 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 904 5949 148 3 5 chr6 41881034 41882675 -107634362 + Lx LINE L1 4858 6496 -158 4 904 756 185 13 0 chr6 41882675 41882832 -107634205 - L1_Mur2 LINE L1 -526 5351 5193 4 904 748 113 0 15 chr6 41882832 41882967 -107634070 + Lx LINE L1 6522 6654 0 4 904 10066 149 65 26 chr6 41882970 41885241 -107631796 + L1_Mur2 LINE L1 1112 3472 -2405 4 904 2481 186 56 35 chr6 41885774 41886325 -107630712 + RLTR12A LTR ERVK 1 563 -5 4 904 1621 305 44 29 chr6 41886789 41887434 -107629603 - MERVK26-int LTR ERVK -1599 5320 4662 4 904 852 121 0 0 chr6 41887434 41887566 -107629471 + (TTTC)n Simple_repeat Simple_repeat 4 135 0 4 904 1621 305 44 29 chr6 41887566 41887788 -107629249 - MERVK26-int LTR ERVK -2258 4661 4440 4 904 3629 154 62 42 chr6 41887955 41888973 -107628064 + RLTR13D1 LTR ERVK 3 965 -58 4 904 1943 340 40 20 chr6 41889177 41889306 -107627731 - MERVK26-int LTR ERVK -3006 3913 3784 4 904 402 21 0 0 chr6 41889306 41889353 -107627684 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 904 1943 340 40 20 chr6 41889353 41890373 -107626664 - MERVK26-int LTR ERVK -3136 3783 2741 4 904 419 370 60 56 chr6 41891678 41891947 -107625090 + B4 SINE B4 2 271 -21 4 904 2409 174 52 163 chr6 41892183 41892932 -107624105 + RMER6A LTR ERVK 75 740 -16 4 904 25770 117 8 1 chr6 41893236 41897932 -107619105 + L1_Mus2 LINE L1 1834 6565 -1 4 904 341 272 40 7 chr6 41897941 41898089 -107618948 - Lx6 LINE L1 -120 7576 7424 4 904 3672 254 46 34 chr6 41898159 41899223 -107617814 - Lx6 LINE L1 -276 7420 6081 4 904 2869 102 12 12 chr6 41900599 41901005 -107616032 + MTB_Mm LTR MaLR 2 407 0 4 904 704 146 0 16 chr6 41904561 41904686 -107612351 + B2_Mm2 SINE B2 73 195 0 4 904 605 266 109 21 chr6 41904851 41905043 -107611994 + RMER1B Other Other 131 339 -727 4 904 24 0 0 0 chr6 41906579 41906603 -107610434 + AT_rich Low_complexity Low_complexity 1 24 0 5 904 4159 120 37 32 chr6 41906603 41907298 -107609739 - Lx LINE L1 -7 6647 5949 5 904 7445 168 2 1 chr6 41907298 41908611 -107608426 + L1_Mur2 LINE L1 4074 5387 -490 5 904 287 279 16 0 chr6 41909427 41909488 -107607549 + ID4_ SINE ID 12 73 -10 5 904 21 0 0 0 chr6 41909502 41909523 -107607514 + AT_rich Low_complexity Low_complexity 1 21 0 5 904 32 86 0 0 chr6 41909580 41909661 -107607376 + AT_rich Low_complexity Low_complexity 1 81 0 5 904 2898 167 29 44 chr6 41909692 41910242 -107606795 + MERVL-int LTR ERVL 278 819 -4666 5 904 4069 184 68 1 chr6 41910239 41910989 -107606048 + MERVL_2A-int LTR ERVL 4830 5629 -132 5 904 308 197 13 38 chr6 41910989 41911068 -107605969 + ORR1A3-int LTR MaLR 567 643 -1320 5 904 2653 132 218 0 chr6 41911103 41911581 -107605456 + MT2B2 LTR ERVL 1 582 -2 5 904 3554 207 34 17 chr6 41911847 41913000 -107604037 + L1_Mur2 LINE L1 888 2057 -3820 5 904 876 89 0 0 chr6 41913000 41913123 -107603914 + (GA)n Simple_repeat Simple_repeat 2 124 0 5 904 3554 206 34 11 chr6 41913123 41913203 -107603834 + L1_Mur2 LINE L1 2058 2141 -3736 5 904 23 33 0 0 chr6 41913207 41913237 -107603800 + AT_rich Low_complexity Low_complexity 1 30 0 5 904 413 222 23 16 chr6 41913274 41913402 -107603635 - Lx9 LINE L1 0 7644 7516 5 904 261 163 0 0 chr6 41913442 41913491 -107603546 + (TGG)n Simple_repeat Simple_repeat 1 49 0 5 904 346 211 10 50 chr6 41913493 41913593 -107603444 - Lx9 LINE L1 -153 7491 7396 5 904 1111 231 94 41 chr6 41913595 41913915 -107603122 + Lx9 LINE L1 7062 7398 -246 5 904 365 333 106 40 chr6 41914018 41914368 -107602669 + L1M2 LINE L1 3816 4188 -1955 5 904 2099 280 30 41 chr6 41914480 41915113 -107601924 - Lx6 LINE L1 -750 6710 6085 5 904 261 0 0 0 chr6 41915400 41915429 -107601608 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 904 494 104 0 10 chr6 41915433 41915530 -107601507 + (GA)n Simple_repeat Simple_repeat 2 97 0 5 904 4412 161 76 18 chr6 41916457 41917309 -107599728 + Lx3C LINE L1 6069 6970 -6 5 904 348 231 143 121 chr6 41920325 41920507 -107596530 + B3 SINE B2 2 197 -1 5 904 1396 198 7 39 chr6 41921192 41921476 -107595561 + ORR1B1 LTR MaLR 61 335 -59 5 904 896 112 0 0 chr6 41921477 41921611 -107595426 + L1_Mus2 LINE L1 6433 6566 0 5 904 23 0 0 0 chr6 41921617 41921640 -107595397 + AT_rich Low_complexity Low_complexity 1 23 0 5 904 237 83 0 0 chr6 41922034 41922070 -107594967 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 904 1727 115 14 56 chr6 41923568 41923853 -107593184 - ORR1A2 LTR MaLR -54 273 1 5 904 317 131 0 16 chr6 41923911 41923973 -107593064 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 904 180 77 0 0 chr6 41923973 41923999 -107593038 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 904 402 274 102 5 chr6 41924000 41924187 -107592850 - L1MA9 LINE L1 -55 6257 6053 5 904 2278 104 12 3 chr6 41924201 41924537 -107592500 + L1_Mus3 LINE L1 6300 6638 0 5 904 334 337 0 0 chr6 41925318 41925407 -107591630 - B1F SINE Alu -51 98 10 5 904 545 341 109 57 chr6 41925410 41926044 -107590993 - L1M4c LINE L1 -4728 1656 990 5 904 7828 105 37 8 chr6 41926053 41928365 -107588672 - L1Md_F2 LINE L1 0 7058 5254 5 904 7492 126 4 2 chr6 41928354 41930357 -107586680 - L1_Mus4 LINE L1 0 6636 4631 5 904 1560 172 0 35 chr6 41930379 41930711 -107586326 - L1Md_F2 LINE L1 -1113 5945 5628 5 904 283 226 195 25 chr6 41930702 41930820 -107586217 + Lx5 LINE L1 6906 7043 -7 5 904 4930 89 5 1 chr6 41930820 41931492 -107585545 + Lx3_Mus LINE L1 6328 7001 -8 5 904 21 57 0 0 chr6 41931492 41931527 -107585510 + AT_rich Low_complexity Low_complexity 1 35 0 5 904 324 70 0 0 chr6 41931661 41931704 -107585333 + (TTG)n Simple_repeat Simple_repeat 2 44 0 5 904 274 303 26 0 chr6 41932197 41932273 -107584764 + ID4 SINE ID 6 83 0 5 904 298 300 0 59 chr6 41932389 41932474 -107584563 + RSINE1 SINE B4 18 97 -68 5 904 1506 148 11 0 chr6 41932560 41932824 -107584213 - L1_Mur2 LINE L1 -1307 4570 4304 5 904 2715 222 128 49 chr6 41932824 41933634 -107583403 - RMER19B LTR ERVK -4 898 25 5 904 236 32 0 0 chr6 41933665 41933696 -107583341 - B1_Mur4 SINE Alu -7 143 113 5 904 1207 142 28 5 chr6 41933725 41933938 -107583099 - L1_Mur2 LINE L1 -1570 4307 4090 5 904 4861 156 44 11 chr6 41933954 41934218 -107582819 - L1_Mur2 LINE L1 -3477 2400 2132 5 904 6665 144 9 37 chr6 41934218 41935364 -107581673 - RLTR13D3 LTR ERVK 0 1114 1 5 904 4861 156 44 11 chr6 41935364 41935444 -107581593 - L1_Mur2 LINE L1 -3746 2131 2052 5 904 402 21 0 0 chr6 41935444 41935491 -107581546 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 904 4861 156 44 11 chr6 41935491 41935704 -107581333 - L1_Mur2 LINE L1 -3826 2051 1835 5 904 183 80 0 0 chr6 41935704 41935729 -107581308 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 5 904 4861 156 44 11 chr6 41935729 41936152 -107580885 - L1_Mur2 LINE L1 -4043 1834 1386 5 904 436 191 109 0 chr6 41936161 41936271 -107580766 + Lx7 LINE L1 7364 7485 -211 5 904 276 77 26 0 chr6 41936312 41936351 -107580686 - L1_Mus2 LINE L1 -345 6221 6182 5 904 3291 195 31 3 chr6 41936346 41936932 -107580105 - Lx4A LINE L1 -28 7030 6429 5 904 5835 67 1 1 chr6 41937219 41938179 -107578858 - L1_Mus2 LINE L1 -257 6309 5350 5 904 1493 96 0 80 chr6 41938179 41938418 -107578619 + L1_Mus2 LINE L1 6347 6566 0 5 904 3053 111 11 1 chr6 41939200 41939635 -107577402 + Lx3B LINE L1 6432 6939 -111 5 904 336 264 255 0 chr6 41939649 41939755 -107577282 + B3 SINE B2 84 216 0 5 1 34798 16 1 4 chr6 41939795 41944995 -107572042 + L1Md_A LINE L1 422 5586 -297 5 905 8458 31 3 0 chr6 41944995 41945988 -107571049 + L1Md_A LINE L1 5587 6582 0 5 905 1347 104 0 0 chr6 41946328 41946521 -107570516 - Lx3C LINE L1 -519 6457 6265 5 905 243 88 0 0 chr6 41946571 41946605 -107570432 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 905 1080 226 64 36 chr6 41946605 41946885 -107570152 + RMER20B LTR ERVK 304 591 -36 5 905 279 0 0 0 chr6 41946934 41946965 -107570072 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 905 6235 73 12 5 chr6 41946977 41947839 -107569198 + RLTR13A3 LTR ERVK 111 978 0 5 905 937 237 114 17 chr6 41947925 41948161 -107568876 - MTE2a LTR MaLR -2 377 119 5 905 513 0 0 0 chr6 41948326 41948383 -107568654 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 905 345 78 0 0 chr6 41948977 41949028 -107568009 + L1_Mur2 LINE L1 2327 2377 -3500 5 905 32983 65 4 7 chr6 41949181 41955308 -107561729 - L1Md_F2 LINE L1 0 6582 522 5 905 2966 35 0 6 chr6 41955383 41955731 -107561306 - ORR1A0 LTR MaLR 0 346 1 5 905 3908 147 19 2 chr6 41955899 41956532 -107560505 - Lx2B LINE L1 -11 6989 6346 5 905 216 0 0 0 chr6 41956536 41956560 -107560477 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 905 1106 216 55 140 chr6 41956574 41956995 -107560042 - RLTR9C LTR ERVK -8 385 1 5 905 3323 41 5 0 chr6 41957003 41957397 -107559640 + MTA_Mm LTR MaLR 1 396 0 5 905 2309 177 17 2 chr6 41957397 41957856 -107559181 - Lx2B LINE L1 -668 6332 5867 5 905 4683 63 3 0 chr6 41957851 41958483 -107558554 + L1Md_F2 LINE L1 4953 5586 -297 5 905 7414 65 25 5 chr6 41958483 41959447 -107557590 + L1Md_F2 LINE L1 5587 6569 -13 5 905 510 156 10 0 chr6 41959447 41959533 -107557504 - Lx2B LINE L1 -1125 5875 5790 5 905 4425 16 0 0 chr6 41959533 41960026 -107557011 + MT2_Mm LTR ERVL 1 493 0 5 905 45111 16 8 0 chr6 41960026 41965346 -107551691 + MERVL-int LTR ERVL 1 5360 -125 5 905 390 167 46 35 chr6 41965346 41965433 -107551604 + ORR1A3-int LTR MaLR 553 640 -1323 5 905 302 0 0 0 chr6 41965433 41965471 -107551566 + MERVL-int LTR ERVL 5448 5485 0 5 905 4443 14 0 0 chr6 41965471 41965964 -107551073 + MT2_Mm LTR ERVL 1 493 0 5 905 1775 199 22 8 chr6 41965965 41966325 -107550712 - Lx2B LINE L1 -91 5792 5428 5 905 1842 102 31 22 chr6 41966325 41966644 -107550393 - RLTRETN_Mm LTR ERVK 0 322 1 5 905 908 64 8 0 chr6 41966644 41966769 -107550268 - ETnERV-int LTR ERVK 0 4844 4719 5 905 1904 156 115 99 chr6 41966768 41967054 -107549983 - ETnERV-int LTR ERVK -2882 4524 4204 5 905 190 186 47 0 chr6 41967054 41967097 -107549940 + L4 LINE RTE 754 798 -1231 5 905 1904 156 115 99 chr6 41967097 41967203 -107549834 - ETnERV-int LTR ERVK -2882 4203 4083 5 905 13802 184 28 16 chr6 41967195 41970591 -107546446 - ETnERV-int LTR ERVK -2858 3309 1 5 905 1847 112 31 22 chr6 41970591 41970910 -107546127 - RLTRETN_Mm LTR ERVK 0 322 1 5 905 678 156 90 21 chr6 41970910 41971054 -107545983 - L1_Mur1 LINE L1 -450 5436 5283 5 905 1079 35 0 0 chr6 41971040 41971184 -107545853 - L1Md_F2 LINE L1 -12 6570 6427 5 905 12484 163 155 8 chr6 41971182 41972936 -107544101 - L1_Mur1 LINE L1 -605 5281 3484 5 905 246 32 0 0 chr6 41972936 41972967 -107544070 + (TTG)n Simple_repeat Simple_repeat 2 32 0 5 905 12484 163 155 8 chr6 41972967 41974167 -107542870 - L1_Mur1 LINE L1 -2403 3483 1894 5 905 531 317 94 26 chr6 41974436 41974627 -107542410 + B3 SINE B2 5 208 -8 5 905 296 290 68 56 chr6 41974712 41975098 -107541939 + L1_Mur3 LINE L1 3112 3489 -2391 5 905 499 330 51 5 chr6 41975098 41975293 -107541744 + B3 SINE B2 2 205 -11 5 905 296 313 62 54 chr6 41975293 41975651 -107541386 + L1_Mur3 LINE L1 3490 3839 -2041 5 905 433 249 34 38 chr6 41975733 41975884 -107541153 - Lx9 LINE L1 -18 7626 7480 5 905 423 0 0 0 chr6 41975884 41975931 -107541106 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 905 433 249 34 38 chr6 41975931 41976017 -107541020 - Lx9 LINE L1 -165 7479 7390 5 905 903 207 24 15 chr6 41976025 41976231 -107540806 + Lx9 LINE L1 7074 7281 -363 5 905 1049 179 31 0 chr6 41976440 41976512 -107540525 - L1_Mur2 LINE L1 -812 5065 4988 5 905 471 101 0 0 chr6 41976512 41976591 -107540446 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 905 1049 179 31 0 chr6 41976591 41976741 -107540296 - L1_Mur2 LINE L1 -890 4987 4837 5 905 520 235 54 0 chr6 41976741 41976907 -107540130 + Lx2B LINE L1 5949 6123 -877 5 905 1673 161 36 17 chr6 41976907 41977268 -107539769 - RLTR9A LTR ERVK 0 368 1 5 905 299 148 0 36 chr6 41977287 41977343 -107539694 - RMER16-int LTR ERVK -22 7384 7331 5 905 409 260 64 16 chr6 41977781 41977906 -107539131 - RMER16-int LTR ERVK -1179 6227 6097 5 905 11887 161 63 45 chr6 41977914 41981975 -107535062 - RMER16-int LTR ERVK -1230 4176 1216 5 905 573 15 0 0 chr6 41981977 41982043 -107534994 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 905 462 198 0 21 chr6 41982419 41982512 -107534525 - RLTR9A LTR ERVK 0 368 278 5 905 479 138 25 0 chr6 41982507 41982587 -107534450 - RLTR9A LTR ERVK -286 82 1 5 905 3349 226 64 8 chr6 41982587 41983411 -107533626 + Lx2B LINE L1 6118 6987 -13 5 905 408 258 128 38 chr6 41983455 41983798 -107533239 + L1M3 LINE L1 3944 4317 -1823 5 905 2191 281 28 37 chr6 41983794 41984470 -107532567 - Lx6 LINE L1 -627 6833 6178 5 905 393 22 0 0 chr6 41984470 41984516 -107532521 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 905 2191 281 28 37 chr6 41984516 41984604 -107532433 - Lx6 LINE L1 -1283 6177 6078 5 905 614 255 28 0 chr6 41985543 41985688 -107531349 - B1_Mur4 SINE Alu 0 150 2 5 905 7246 80 6 2 chr6 41985969 41987026 -107530011 + MusHAL1 LINE L1 918 1978 -734 5 905 1061 123 6 0 chr6 41987042 41987221 -107529816 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 905 513 0 0 0 chr6 41987221 41987278 -107529759 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 905 355 333 0 16 chr6 41987289 41987411 -107529626 + MTD LTR MaLR 12 131 -288 5 905 486 239 62 0 chr6 41987476 41987589 -107529448 + MTD LTR MaLR 242 361 -58 5 905 1214 85 0 11 chr6 41987592 41987770 -107529267 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 5 905 755 291 38 22 chr6 41987867 41988050 -107528987 + B3 SINE B2 1 186 -30 5 905 1119 58 0 0 chr6 41989019 41989157 -107527880 + B1_Mus2 SINE Alu 1 138 -9 5 905 495 0 0 0 chr6 41989157 41989212 -107527825 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 905 338 274 242 0 chr6 41990886 41991039 -107525998 + B3A SINE B2 4 193 -5 5 905 195 121 0 0 chr6 41992896 41992914 -107524123 + (GA)n Simple_repeat Simple_repeat 1 18 0 6 905 189 0 0 0 chr6 41992914 41992935 -107524102 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 905 195 121 0 0 chr6 41992935 41992949 -107524088 + (GA)n Simple_repeat Simple_repeat 1 14 0 6 905 21 0 0 0 chr6 41992990 41993011 -107524026 + AT_rich Low_complexity Low_complexity 1 21 0 6 905 312 281 218 36 chr6 41993084 41993309 -107523728 - RMER20B LTR ERVK -228 399 134 6 905 2362 278 64 15 chr6 41993726 41994461 -107522576 - Lx8 LINE L1 -360 7113 6343 6 905 9997 111 20 1 chr6 41994654 41996977 -107520060 + L1_Mus2 LINE L1 4202 6564 -2 6 905 192 200 0 0 chr6 41997937 41997987 -107519050 + GA-rich Low_complexity Low_complexity 5 54 0 6 905 5548 160 37 9 chr6 41997996 41998973 -107518064 + Lx2A1 LINE L1 6000 7003 -5 6 905 921 19 0 0 chr6 41999145 41999252 -107517785 + (GAGAA)n Simple_repeat Simple_repeat 4 110 0 6 905 4739 67 25 1 chr6 41999312 42000000 -107517037 + L1Md_A LINE L1 201 904 -5820 6 905 35109 33 2 9 chr6 42000000 42004799 -107512238 + L1Md_A LINE L1 905 5670 -213 1 905 296 57 19 0 chr6 42004802 42004855 -107512182 + L1_Mus3 LINE L1 6578 6631 -7 2 905 198 143 0 0 chr6 42004861 42004896 -107512141 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 3 905 1359 33 0 22 chr6 42004914 42005098 -107511939 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 905 1042 128 0 16 chr6 42005099 42005282 -107511755 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 905 1853 166 5 20 chr6 42005285 42005678 -107511359 + L1_Mur2 LINE L1 4323 4709 -1168 6 905 4702 207 57 13 chr6 42005706 42005799 -107511238 - MurERV4_19-int LTR ERVK -4684 1096 1014 7 905 1129 35 55 0 chr6 42005799 42005944 -107511093 + L1Md_F2 LINE L1 6418 6570 -12 8 905 4702 207 57 13 chr6 42005944 42006898 -107510139 - MurERV4_19-int LTR ERVK -4767 1013 3 7 905 1883 266 61 30 chr6 42006906 42007475 -107509562 - RMER19B LTR ERVK -6 896 24 7 905 727 312 73 11 chr6 42007479 42007836 -107509201 - Lx7 LINE L1 -1233 6463 6085 9 905 9958 78 60 4 chr6 42008244 42010693 -107506344 + L1Md_F LINE L1 352 2940 -2943 1 905 3107 45 20 0 chr6 42010694 42011096 -107505941 + L1Md_F2 LINE L1 5177 5586 -297 1 905 8259 36 2 0 chr6 42011096 42012074 -107504963 + L1Md_F2 LINE L1 5587 6566 -16 1 905 10059 87 5 0 chr6 42012129 42013611 -107503426 + L1_Mm LINE L1 2734 4222 -1661 1 905 7639 144 51 18 chr6 42013607 42015587 -107501450 - L1_Mur1 LINE L1 -3069 2817 752 1 905 672 259 37 33 chr6 42015556 42015876 -107501161 - L1_Mur1 LINE L1 -6137 847 674 1 905 886 237 102 10 chr6 42016024 42016318 -107500719 - RMER1C Other Other -2 1340 1020 1 905 190 128 11 75 chr6 42016364 42016457 -107500580 + T-rich Low_complexity Low_complexity 4 90 0 1 905 204 40 0 0 chr6 42016735 42016760 -107500277 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 905 517 319 19 14 chr6 42016760 42016967 -107500070 - B3 SINE B2 -8 208 1 1 905 186 349 81 11 chr6 42017633 42017720 -107499317 - L2 LINE L2 -1184 2235 2143 1 905 266 314 29 34 chr6 42017923 42018190 -107498847 + L1_Mur1 LINE L1 672 750 -6232 1 905 1094 193 67 30 chr6 42018182 42018481 -107498556 + L1_Mur1 LINE L1 526 835 -6147 2 905 34462 50 7 7 chr6 42018987 42024907 -107492130 - L1Md_F3 LINE L1 -14 6570 650 2 905 2472 70 3 0 chr6 42024907 42025249 -107491788 - L1_Mm LINE L1 -581 5302 4960 2 905 11106 19 0 0 chr6 42025246 42026590 -107490447 + L1Md_T LINE L1 4243 5586 -297 2 905 8510 31 0 0 chr6 42026590 42027586 -107489451 + L1Md_T LINE L1 5587 6582 0 2 905 369 0 0 0 chr6 42028397 42028438 -107488599 + (CTTG)n Simple_repeat Simple_repeat 2 42 0 2 905 23 33 0 0 chr6 42028578 42028608 -107488429 + AT_rich Low_complexity Low_complexity 1 30 0 2 905 2118 224 152 4 chr6 42028937 42029635 -107487402 + L1VL2 LINE L1 51 851 -5484 2 905 3648 138 35 13 chr6 42029922 42030545 -107486492 + L1_Mus4 LINE L1 5985 6621 -15 2 905 1416 273 61 5 chr6 42030550 42030992 -107486045 - Lx6 LINE L1 -246 7214 6748 2 905 3403 40 105 0 chr6 42030993 42031423 -107485614 - IAPLTR2_Mm LTR ERVK 0 475 1 2 905 13549 65 8 8 chr6 42031425 42033249 -107483788 - IAPEz-int LTR ERVK -2 6479 4656 2 905 1813 87 8 0 chr6 42033248 42033500 -107483537 - IAPEz-int LTR ERVK -5183 2497 2244 3 905 907 59 0 0 chr6 42033495 42033614 -107483423 - IAPEz-int LTR ERVK -5004 1477 1359 3 905 3664 65 0 18 chr6 42033614 42034118 -107482919 - IAPEz-int LTR ERVK -5819 662 168 3 905 256 296 0 0 chr6 42034118 42034172 -107482865 - RLTR27 LTR ERVK -34 275 222 3 905 958 122 25 81 chr6 42034172 42034369 -107482668 - IAPEz-int LTR ERVK -6287 194 9 3 905 3023 32 84 5 chr6 42034370 42034751 -107482286 - IAPLTR2a LTR ERVK 0 411 1 3 905 229 232 30 59 chr6 42034853 42034954 -107482083 + Lx4B LINE L1 6960 7057 -1 3 905 405 0 0 0 chr6 42035290 42035335 -107481702 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 905 477 0 0 0 chr6 42035852 42035905 -107481132 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 905 5330 127 23 27 chr6 42036085 42037011 -107480026 - Lx LINE L1 0 6654 5733 3 905 1675 261 160 11 chr6 42037036 42037560 -107479477 - RMER20B LTR ERVK -25 602 1 3 905 15127 169 25 24 chr6 42037975 42041344 -107475693 - MusHAL1 LINE L1 -1334 4552 1182 3 905 1355 79 5 5 chr6 42041346 42041537 -107475500 - L1Md_F2 LINE L1 -10 6572 6382 3 905 38128 22 0 6 chr6 42041537 42047527 -107469510 - L1Md_A LINE L1 -4 6578 630 3 905 33270 80 1 11 chr6 42047528 42054018 -107463019 - L1Md_F2 LINE L1 -188 6394 98 3 905 2370 243 119 20 chr6 42054019 42054913 -107462124 - L1VL2 LINE L1 -5447 888 45 4 905 375 196 22 0 chr6 42054920 42055012 -107462025 - Lx7 LINE L1 -1511 6185 6092 4 905 231 61 0 0 chr6 42055301 42055334 -107461703 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 905 21 57 0 0 chr6 42055713 42055748 -107461289 + AT_rich Low_complexity Low_complexity 1 35 0 4 905 653 203 39 0 chr6 42055949 42056077 -107460960 - B1_Mus1 SINE Alu -10 138 6 4 905 407 271 65 54 chr6 42056993 42057161 -107459876 - RLTR13C2 LTR ERVK 0 808 639 4 905 231 320 29 20 chr6 42057693 42057795 -107459242 - RLTR13C2 LTR ERVK -1011 103 1 4 905 4151 122 31 12 chr6 42058075 42058933 -107458104 + L1VL2 LINE L1 278 1160 -2455 4 905 2706 155 4 13 chr6 42058929 42059399 -107457638 - L1_Mus4 LINE L1 -81 6555 6090 4 905 1539 65 20 0 chr6 42059399 42059599 -107457438 - RMER17D LTR ERVK -685 204 1 4 905 246 32 0 0 chr6 42059626 42059657 -107457380 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 4 905 30 0 0 0 chr6 42060032 42060062 -107456975 + AT_rich Low_complexity Low_complexity 1 30 0 5 905 248 0 31 0 chr6 42060320 42060352 -107456685 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 905 25 0 0 0 chr6 42060586 42060611 -107456426 + AT_rich Low_complexity Low_complexity 1 25 0 5 905 836 323 12 24 chr6 42060751 42061335 -107455702 + ETnERV3-int LTR ERVK 4980 5556 -252 5 905 234 259 146 12 chr6 42061568 42061650 -107455387 + RLTR13D3 LTR ERVK 1 93 -1021 5 905 24 77 0 0 chr6 42062055 42062107 -107454930 + AT_rich Low_complexity Low_complexity 1 52 0 5 905 242 184 0 0 chr6 42062139 42062177 -107454860 + B2_Mm2 SINE B2 1 38 -157 5 905 307 225 112 51 chr6 42062417 42062602 -107454435 + RLTR13D3 LTR ERVK 983 1072 -42 5 905 3970 101 4 2 chr6 42062602 42063306 -107453731 - L1_Mus2 LINE L1 -590 5976 5271 5 905 581 271 0 0 chr6 42063807 42063984 -107453053 - MMTV-int LTR ERVK -5564 1689 1513 5 905 326 319 45 12 chr6 42064338 42064502 -107452535 - RLTR13C2 LTR ERVK -31 777 640 5 905 21 57 0 0 chr6 42064694 42064729 -107452308 + AT_rich Low_complexity Low_complexity 1 35 0 6 905 241 284 148 0 chr6 42065048 42065136 -107451901 - RLTR13C2 LTR ERVK -1013 101 1 5 905 576 0 0 0 chr6 42065918 42065982 -107451055 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 6 905 1507 59 0 5 chr6 42066196 42066402 -107450635 - L1Md_F3 LINE L1 -757 5827 5623 6 905 6417 91 13 0 chr6 42066396 42067346 -107449691 - L1_Mur1 LINE L1 -2738 3148 2187 6 905 509 69 0 0 chr6 42067345 42067417 -107449620 - L1_Mur1 LINE L1 -4022 1864 1793 6 905 1289 90 25 0 chr6 42067414 42067614 -107449423 + L1_Mur1 LINE L1 1918 2122 -3764 6 905 1015 207 63 8 chr6 42067625 42067878 -107449159 - L1_Mur1 LINE L1 -6672 312 46 6 905 2269 95 14 3 chr6 42067878 42068236 -107448801 + L1_Mur1 LINE L1 3908 4269 -1617 6 905 7167 155 48 65 chr6 42068239 42070030 -107447007 + L1Md_F2 LINE L1 3827 5586 -297 6 905 7985 49 5 0 chr6 42070030 42071008 -107446029 + L1Md_F2 LINE L1 5587 6569 -13 6 905 7095 95 5 1 chr6 42071149 42072774 -107444263 - L1_Mus1 LINE L1 -15 6552 4921 6 113 34889 70 1 25 chr6 42072792 42079094 -107437943 + L1Md_T LINE L1 99 5586 -297 6 906 7948 60 0 0 chr6 42079094 42080090 -107436947 + L1Md_T LINE L1 5587 6582 0 6 906 23622 119 14 7 chr6 42080448 42085181 -107431856 - L1Md_F LINE L1 -937 4946 177 6 906 352 382 45 81 chr6 42085497 42085830 -107431207 - RLTR25B LTR ERVK -707 321 1 6 906 1274 106 106 0 chr6 42085830 42086056 -107430981 + L1_Mur2 LINE L1 4158 4407 -1470 7 906 725 248 262 40 chr6 42086831 42087129 -107429908 - ORR1D2 LTR MaLR -4 366 3 7 906 609 14 0 0 chr6 42087525 42087595 -107429442 + (TC)n Simple_repeat Simple_repeat 2 71 0 7 906 717 298 21 50 chr6 42087595 42087840 -107429197 - B4A SINE B4 -17 275 38 7 906 1654 209 101 15 chr6 42087840 42088247 -107428790 - RMER10A LTR ERVL 0 442 1 7 906 717 298 21 50 chr6 42088247 42088280 -107428757 - B4A SINE B4 -255 37 5 7 906 34 55 0 0 chr6 42088492 42088547 -107428490 + AT_rich Low_complexity Low_complexity 1 55 0 7 906 699 179 98 13 chr6 42088643 42088796 -107428241 - RMER10A LTR ERVL -209 233 68 7 906 231 174 68 25 chr6 42088831 42088949 -107428088 + (TA)n Simple_repeat Simple_repeat 2 124 0 7 906 724 220 42 16 chr6 42088959 42089148 -107427889 - Lx2B LINE L1 -4 6996 6803 7 906 636 81 0 0 chr6 42089148 42089235 -107427802 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 7 906 1547 210 34 53 chr6 42089244 42089656 -107427381 - Lx2B LINE L1 -39 6961 6558 8 906 200 143 0 23 chr6 42089715 42089758 -107427279 + GA-rich Low_complexity Low_complexity 4 45 0 8 906 255 296 11 0 chr6 42089797 42089885 -107427152 + Lx9 LINE L1 7259 7347 -297 8 906 459 0 0 0 chr6 42089992 42090043 -107426994 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 906 345 303 30 19 chr6 42090161 42090297 -107426740 + MIR SINE MIR 40 170 -38 8 906 495 0 0 0 chr6 42090326 42090381 -107426656 + (GA)n Simple_repeat Simple_repeat 1 55 0 8 906 190 374 86 33 chr6 42092101 42092253 -107424784 + MER5B DNA MER1_type 3 162 -16 8 906 618 284 13 26 chr6 42092623 42092775 -107424262 - RSINE1 SINE B4 0 165 16 8 906 201 74 0 0 chr6 42092876 42092903 -107424134 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 8 906 3188 162 75 8 chr6 42092904 42093495 -107423542 - Lx4A LINE L1 -2 7056 6427 8 906 189 0 0 0 chr6 42093526 42093547 -107423490 + (A)n Simple_repeat Simple_repeat 1 21 0 9 906 1122 168 0 0 chr6 42093547 42093743 -107423294 + Lx4A LINE L1 6237 6432 -626 9 906 2709 146 29 44 chr6 42093745 42094188 -107422849 - L1_Mur2 LINE L1 -604 5273 4816 9 906 1195 41 0 20 chr6 42094188 42094337 -107422700 + B1_Mus2 SINE Alu 2 147 0 9 906 2709 146 29 44 chr6 42094337 42094443 -107422594 - L1_Mur2 LINE L1 -1062 4815 4732 9 906 392 271 12 12 chr6 42094907 42094993 -107422044 - B4A SINE B4 -206 86 1 9 906 35707 76 17 14 chr6 42095254 42101580 -107415457 - L1Md_F3 LINE L1 -14 6573 220 9 906 297 346 0 0 chr6 42101617 42101695 -107415342 + Tigger5 DNA MER2_type 2328 2405 -1 9 906 548 229 8 0 chr6 42101924 42102046 -107414991 + Lx8 LINE L1 6764 6886 -587 9 906 247 307 0 0 chr6 42102516 42102591 -107414446 + RMER1B Other Other 62 136 -930 9 906 932 243 37 0 chr6 42103020 42103234 -107413803 + RMER1B Other Other 43 264 -802 9 906 1936 229 94 38 chr6 42103211 42103796 -107413241 + RMER1B Other Other 449 1066 0 9 906 2374 201 44 17 chr6 42104054 42104576 -107412461 + Lx5 LINE L1 6515 7050 0 1 906 635 254 92 18 chr6 42104893 42105281 -107411756 + L1MA9 LINE L1 5174 5597 -715 1 906 354 23 0 0 chr6 42105281 42105324 -107411713 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 906 635 292 115 5 chr6 42105324 42105387 -107411650 + L1MA9 LINE L1 5598 5670 -642 1 906 214 255 0 0 chr6 42105473 42105520 -107411517 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 906 303 274 39 58 chr6 42105768 42105923 -107411114 + L1MA9 LINE L1 6121 6272 -40 1 906 19451 71 30 2 chr6 42106055 42112835 -107404202 - L1Md_T LINE L1 0 6585 1 1 906 6023 168 50 27 chr6 42112910 42115051 -107401986 + L1_Mur3 LINE L1 58 2257 -3623 1 906 1361 148 14 5 chr6 42115066 42115277 -107401760 + Lx3B LINE L1 6758 6970 -3 1 906 1613 182 34 40 chr6 42115292 42115520 -107401517 + L1_Mur3 LINE L1 3730 3946 -1934 1 906 5110 51 2 7 chr6 42115520 42116110 -107400927 - LTRIS_Mus LTR ERV1 0 587 1 1 906 1613 182 34 40 chr6 42116110 42116230 -107400807 + L1_Mur3 LINE L1 3947 4076 -1804 1 906 28829 21 0 0 chr6 42116240 42120200 -107396837 - L1Md_T LINE L1 -1 6581 2621 1 906 6363 11 0 0 chr6 42120199 42120905 -107396132 + L1Md_T LINE L1 4881 5586 -297 1 906 8984 32 1 0 chr6 42120905 42121900 -107395137 + L1Md_T LINE L1 5587 6582 0 1 906 14996 30 4 14 chr6 42121904 42124668 -107392369 - L1Md_A LINE L1 -2919 2964 232 1 906 1340 151 40 12 chr6 42124680 42124928 -107392109 + L1_Mur3 LINE L1 4090 4344 -1536 1 906 713 201 87 5 chr6 42124913 42125098 -107391939 + Lx4A LINE L1 5946 6145 -913 1 906 1731 80 17 0 chr6 42125095 42125333 -107391704 - MusHAL1 LINE L1 -690 2022 1781 1 906 6916 161 80 21 chr6 42125324 42127179 -107389858 + Lx7 LINE L1 3766 5947 -1749 1 906 495 210 371 0 chr6 42127186 42127372 -107389665 + Lx7 LINE L1 6814 7068 -628 1 906 267 88 0 0 chr6 42127382 42127416 -107389621 - RMER1C Other Other -387 955 922 1 906 2789 48 3 15 chr6 42127515 42127851 -107389186 - L1_Mus1 LINE L1 -2 6565 6234 1 906 386 118 16 6 chr6 42127851 42127915 -107389122 + L1_Mus1 LINE L1 6170 6230 -406 1 906 186 288 0 55 chr6 42128634 42128689 -107388348 - L2 LINE L2 -2133 1286 1235 1 906 320 126 44 66 chr6 42128816 42128896 -107388141 + RMER17C LTR ERVK 113 191 -219 1 906 1035 91 0 24 chr6 42128896 42129065 -107387972 + (TTC)n Simple_repeat Simple_repeat 3 167 0 1 906 320 126 44 66 chr6 42129065 42129120 -107387917 + RMER17C LTR ERVK 192 245 -165 1 906 831 269 11 6 chr6 42130428 42130636 -107386401 + B3A SINE B2 3 216 0 1 906 539 309 15 0 chr6 42130650 42130786 -107386251 - B1_Mur3 SINE Alu -6 143 6 1 906 21 36 0 0 chr6 42130936 42130964 -107386073 + AT_rich Low_complexity Low_complexity 1 28 0 1 906 762 109 14 7 chr6 42131009 42131147 -107385890 + (TAGA)n Simple_repeat Simple_repeat 3 141 0 1 906 307 335 0 5 chr6 42131599 42131715 -107385322 + CT-rich Low_complexity Low_complexity 1 115 0 1 906 232 286 115 52 chr6 42131811 42131907 -107385130 + RSINE1 SINE B4 63 164 -1 1 906 733 360 73 32 chr6 42133369 42133739 -107383298 + MLT1D LTR MaLR 1 385 -120 1 906 361 343 52 24 chr6 42133904 42134116 -107382921 + MER20 DNA MER1_type 1 218 -1 1 906 550 291 6 68 chr6 42134223 42134385 -107382652 + ID_B1 SINE B4 4 155 -69 1 906 1049 0 8 0 chr6 42134476 42134597 -107382440 + (TC)n Simple_repeat Simple_repeat 2 123 0 1 906 777 278 6 18 chr6 42134635 42134800 -107382237 + B3A SINE B2 1 163 -35 1 906 369 0 0 0 chr6 42134802 42134843 -107382194 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 906 459 0 0 0 chr6 42134843 42134893 -107382144 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 1 906 434 322 0 9 chr6 42135689 42135805 -107381232 + ID_B1 SINE B4 82 196 -28 1 906 384 326 23 15 chr6 42135805 42135820 -107381217 + B1F1 SINE Alu 1 132 -17 1 906 228 67 0 0 chr6 42136639 42136669 -107380368 + (TATTG)n Simple_repeat Simple_repeat 1 30 0 1 906 23 68 0 0 chr6 42136979 42137023 -107380014 + AT_rich Low_complexity Low_complexity 1 44 0 1 906 946 205 10 20 chr6 42137605 42137804 -107379233 - RLTR14 LTR ERV1 -185 197 1 1 906 594 0 0 0 chr6 42138289 42138355 -107378682 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 906 1366 207 167 102 chr6 42138355 42138786 -107378251 - MT2A LTR ERVL -74 459 1 1 906 322 264 99 46 chr6 42138897 42139048 -107377989 - RLTR13D3 LTR ERVK 0 1114 983 1 906 272 167 0 0 chr6 42139307 42139349 -107377688 - B2_Mm2 SINE B2 -153 42 1 1 906 261 0 0 0 chr6 42139782 42139811 -107377226 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 906 1193 309 80 39 chr6 42140148 42141084 -107375953 + L1_Rod LINE L1 4940 5847 0 1 906 2254 264 36 45 chr6 42141103 42141300 -107375737 + Lx8 LINE L1 6784 6970 -503 1 906 393 22 0 0 chr6 42141300 42141346 -107375691 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 906 2254 264 36 45 chr6 42141346 42141815 -107375222 + Lx8 LINE L1 6971 7444 -29 1 906 1010 252 73 30 chr6 42141926 42142228 -107374809 + Lx8 LINE L1 7141 7455 -18 1 906 240 35 0 0 chr6 42142228 42142257 -107374780 + (TATATG)n Simple_repeat Simple_repeat 1 29 0 1 906 312 27 0 0 chr6 42142258 42142295 -107374742 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 906 1190 69 7 7 chr6 42142590 42142736 -107374301 + B1_Mus2 SINE Alu 1 146 -1 1 906 2030 151 0 25 chr6 42142917 42143244 -107373793 - ORR1A2 LTR MaLR -8 319 1 1 906 381 43 0 0 chr6 42143254 42143301 -107373736 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 906 1140 111 128 0 chr6 42143332 42143504 -107373533 + B2_Mm2 SINE B2 1 194 -1 1 906 606 244 116 42 chr6 42144069 42144551 -107372486 - L1M4 LINE L1 -587 5597 5090 1 906 8729 144 24 23 chr6 42145369 42147302 -107369735 + Lx2 LINE L1 5056 6997 0 1 906 3417 62 2 2 chr6 42147365 42147771 -107369266 + L1_Mus2 LINE L1 6161 6566 0 1 906 240 328 129 45 chr6 42148159 42148360 -107368677 - Charlie8 DNA MER1_type -202 2226 2009 1 906 591 248 78 0 chr6 42148409 42148550 -107368487 + Lx8 LINE L1 7171 7322 -151 1 906 588 196 146 6 chr6 42148714 42148878 -107368159 - Lx5 LINE L1 0 7050 6864 1 906 1236 289 35 9 chr6 42148879 42149225 -107367812 - MTE2b LTR MaLR -24 355 1 1 906 1149 328 119 50 chr6 42149540 42150573 -107366464 - Charlie8 DNA MER1_type -903 1525 422 1 906 331 311 0 10 chr6 42152215 42152319 -107364718 - MLT1A1 LTR MaLR 0 408 306 1 906 7429 95 22 4 chr6 42152438 42153466 -107363571 + L1_Mus3 LINE L1 5587 6633 -5 1 906 6145 5 0 0 chr6 42153555 42154196 -107362841 - L1Md_A LINE L1 0 6582 5942 1 906 1417 284 106 18 chr6 42154226 42154728 -107362309 + Lx8 LINE L1 6925 7470 -3 1 906 1845 124 99 13 chr6 42154752 42155054 -107361983 + ORR1A4 LTR MaLR 1 328 -1 1 906 297 167 81 27 chr6 42155056 42155130 -107361907 - MLT1A1 LTR MaLR -326 82 5 1 906 342 328 8 17 chr6 42155787 42155905 -107361132 - PB1D10 SINE Alu 0 117 1 1 906 39737 43 8 0 chr6 42156408 42162726 -107354311 - L1Md_T LINE L1 0 6582 281 1 906 2278 200 52 2 chr6 42162938 42163339 -107353698 - MTC LTR MaLR 0 421 1 1 906 539 167 19 0 chr6 42163406 42163514 -107353523 + GA-rich Low_complexity Low_complexity 3 112 0 1 906 5900 119 25 9 chr6 42163825 42164682 -107352355 + Lx2A1 LINE L1 6139 7008 0 1 906 756 184 0 0 chr6 42164682 42164829 -107352208 + GA-rich Low_complexity Low_complexity 2 148 0 1 906 7592 89 6 1 chr6 42166834 42168526 -107348511 + L1_Mus1 LINE L1 4869 6567 0 1 906 1399 95 16 0 chr6 42169260 42169449 -107347588 - B2_Mm2 SINE B2 0 195 4 1 906 423 0 0 0 chr6 42169449 42169496 -107347541 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 906 585 0 0 0 chr6 42170479 42170544 -107346493 + (GTTTG)n Simple_repeat Simple_repeat 3 67 0 1 906 624 257 69 0 chr6 42171681 42171856 -107345181 + B3A SINE B2 8 194 -4 1 906 1173 22 0 14 chr6 42171876 42172016 -107345021 - B1_Mm SINE Alu -9 138 1 1 906 734 274 31 13 chr6 42172512 42172741 -107344296 - MER58B DNA MER1_type 0 341 109 1 906 358 261 122 32 chr6 42172741 42172864 -107344173 + B1_Mus2 SINE Alu 2 135 -12 1 906 1142 112 0 6 chr6 42172864 42173043 -107343994 + (GAA)n Simple_repeat Simple_repeat 1 178 0 1 906 209 238 0 0 chr6 42173045 42173087 -107343950 + GA-rich Low_complexity Low_complexity 1 42 0 1 906 213 321 0 0 chr6 42173320 42173376 -107343661 + RSINE1 SINE B4 91 146 -19 1 906 435 38 0 0 chr6 42173435 42173488 -107343549 + (ATTG)n Simple_repeat Simple_repeat 4 56 0 1 906 452 281 25 40 chr6 42173531 42173743 -107343294 + ID_B1 SINE B4 51 211 -13 1 906 237 309 31 10 chr6 42174232 42174330 -107342707 + MIR SINE MIR 117 216 -46 1 906 405 0 0 0 chr6 42175118 42175163 -107341874 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 906 224 111 22 0 chr6 42175629 42175674 -107341363 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 906 704 209 8 0 chr6 42176716 42176850 -107340187 - B1_Mur1 SINE Alu -13 136 2 1 906 252 219 47 0 chr6 42177121 42177185 -107339852 - MER63D DNA AcHobo -687 374 308 1 906 1393 210 156 28 chr6 42177985 42178490 -107338547 + Lx7 LINE L1 7132 7667 -29 1 906 860 221 85 20 chr6 42178750 42178949 -107338088 + ID_B1 SINE B4 5 216 -8 1 906 324 0 0 0 chr6 42179175 42179211 -107337826 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 906 656 183 229 36 chr6 42179302 42179551 -107337486 + MER44A DNA MER2_type 11 307 -32 1 906 195 42 0 0 chr6 42179636 42179660 -107337377 + (CTG)n Simple_repeat Simple_repeat 1 24 0 1 906 236 314 78 7 chr6 42179663 42179804 -107337233 + L1M5 LINE L1 5544 5694 -500 1 906 335 288 18 59 chr6 42180146 42180360 -107336677 + MIRc SINE MIR 18 227 -35 1 906 412 269 136 53 chr6 42180360 42180588 -107336449 + Lx8 LINE L1 7192 7438 -35 1 906 234 0 0 0 chr6 42180651 42180677 -107336360 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 906 1146 194 129 41 chr6 42181951 42182297 -107334740 - ORR1D1 LTR MaLR 0 379 1 1 906 930 304 114 30 chr6 42182305 42182841 -107334196 + L1ME1 LINE L1 5559 6139 -40 1 906 4359 94 33 0 chr6 42182881 42183485 -107333552 + L1VL4 LINE L1 195 818 -5484 2 906 247 218 0 18 chr6 42183485 42183541 -107333496 - RLTR31_Mm LTR ERVK -506 55 1 2 906 3985 196 74 3 chr6 42183543 42184475 -107332562 - MYSERV16_I-int LTR ERVK -2 2324 1327 2 906 1178 107 59 0 chr6 42184475 42184644 -107332393 + B2_Mm2 SINE B2 3 181 -14 2 906 358 324 87 14 chr6 42184673 42184811 -107332226 + RSINE1 SINE B4 1 148 -17 2 906 24 0 0 0 chr6 42184829 42184853 -107332184 + AT_rich Low_complexity Low_complexity 1 24 0 2 906 435 326 29 0 chr6 42184931 42185069 -107331968 + MLT1A0 LTR MaLR 205 346 -19 2 906 201 132 0 0 chr6 42185188 42185226 -107331811 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 906 304 333 112 16 chr6 42185536 42185661 -107331376 - RSINE1 SINE B4 -28 137 1 2 906 345 312 28 35 chr6 42185730 42185873 -107331164 + MER20 DNA MER1_type 65 206 -13 2 906 293 206 18 0 chr6 42186451 42186517 -107330520 + ID4 SINE ID 5 71 -12 2 906 290 279 0 48 chr6 42186533 42186616 -107330421 + C-rich Low_complexity Low_complexity 4 82 0 2 906 338 372 6 0 chr6 42186885 42187049 -107329988 + L1ME1 LINE L1 6170 6334 0 1 906 289 273 68 0 chr6 42187866 42187954 -107329083 + B1F1 SINE Alu 15 108 -41 2 906 907 268 15 0 chr6 42188104 42188309 -107328728 + B3 SINE B2 1 208 -8 2 906 831 216 68 24 chr6 42188876 42189127 -107327910 + L1M3 LINE L1 3927 4188 -1952 2 906 611 155 70 99 chr6 42189133 42189305 -107327732 + B2_Mm2 SINE B2 27 193 -2 2 906 550 278 63 50 chr6 42189306 42189704 -107327333 + L1M3 LINE L1 4180 4582 -1561 2 906 349 274 23 30 chr6 42189729 42189861 -107327176 + L1MA7 LINE L1 6157 6287 -4 2 906 2781 113 33 25 chr6 42189862 42190343 -107326694 - Lx3_Mus LINE L1 -617 6392 5908 2 906 480 35 0 0 chr6 42190345 42190403 -107326634 + (T)n Simple_repeat Simple_repeat 1 58 0 2 906 4054 99 40 8 chr6 42190417 42191009 -107326028 + Lx3_Mus LINE L1 6380 6990 -19 2 906 552 227 123 49 chr6 42191013 42191175 -107325862 + B3 SINE B2 3 176 -40 2 906 466 142 88 96 chr6 42191202 42191327 -107325710 - B1_Mm SINE Alu -7 140 17 2 906 346 328 67 45 chr6 42191393 42191750 -107325287 - L1MC LINE L1 -2255 5627 5263 2 906 706 163 32 13 chr6 42191756 42191911 -107325126 - RMER12 LTR ERVK 0 1322 1165 2 906 4482 182 88 51 chr6 42191912 42192157 -107324880 - RMER12 LTR ERVK -56 1266 972 2 906 513 0 0 0 chr6 42192157 42192214 -107324823 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 906 234 0 0 0 chr6 42192215 42192241 -107324796 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 906 4482 182 88 51 chr6 42192241 42192361 -107324676 - RMER12 LTR ERVK -351 971 839 2 906 2457 29 15 279 chr6 42192361 42192891 -107324146 + RLTR10 LTR ERVK 1 390 0 2 906 4482 182 88 51 chr6 42192891 42193742 -107323295 - RMER12 LTR ERVK -484 838 3 2 906 731 316 95 14 chr6 42194364 42194723 -107322314 + MER57D LTR ERV1 24 411 0 2 906 391 325 76 86 chr6 42194789 42195079 -107321958 - B4 SINE B4 -1 291 5 2 906 777 257 170 5 chr6 42195240 42195566 -107321471 + MER44B DNA MER2_type 132 524 -26 2 906 680 162 8 8 chr6 42196946 42197064 -107319973 + B3 SINE B2 1 118 -98 2 906 251 235 11 69 chr6 42197912 42197999 -107319038 + ID4_ SINE ID 2 83 0 2 906 493 28 14 14 chr6 42198491 42198563 -107318474 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 906 454 297 12 92 chr6 42201534 42201697 -107315340 + RSINE1 SINE B4 16 165 0 2 906 606 14 0 0 chr6 42202221 42202292 -107314745 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 906 1516 247 19 19 chr6 42202292 42202655 -107314382 - MTE2b LTR MaLR -16 363 1 2 906 675 272 11 11 chr6 42202859 42203041 -107313996 + L1MA7 LINE L1 5553 5734 -557 2 906 3174 145 24 16 chr6 42203039 42203545 -107313492 - Lx2B LINE L1 -218 6782 6273 2 906 320 190 71 7 chr6 42203590 42203701 -107313336 + L1MA7 LINE L1 6164 6278 -22 2 906 228 344 0 11 chr6 42203893 42203987 -107313050 - PB1D10 SINE Alu -11 106 14 2 906 393 58 0 0 chr6 42204054 42204106 -107312931 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 906 202 309 0 11 chr6 42204581 42204676 -107312361 + (ATTG)n Simple_repeat Simple_repeat 1 94 0 2 906 1215 119 11 6 chr6 42204887 42205065 -107311972 + B2_Mm1t SINE B2 1 179 -14 2 113 349 128 313 52 chr6 42205100 42205215 -107311822 + B2_Mm2 SINE B2 49 193 -2 2 907 703 221 14 0 chr6 42205229 42205369 -107311668 + B1_Mur3 SINE Alu 6 147 -2 2 907 587 291 78 61 chr6 42206191 42206319 -107310718 + L1ME2z LINE L1 6005 6135 -309 2 907 2316 102 0 43 chr6 42206319 42206688 -107310349 + L1_Mus3 LINE L1 6280 6632 -6 2 907 587 291 78 61 chr6 42206688 42206983 -107310054 + L1ME2z LINE L1 6136 6435 -9 2 907 316 300 0 18 chr6 42207812 42207924 -107309113 - PB1D10 SINE Alu -7 110 1 2 907 1206 56 0 0 chr6 42208503 42208647 -107308390 + B1_Mus1 SINE Alu 5 148 0 2 907 799 231 100 31 chr6 42208845 42209104 -107307933 + MTD LTR MaLR 140 416 -3 2 907 813 234 62 84 chr6 42209183 42209505 -107307532 + MTEa LTR MaLR 20 334 -45 2 907 1009 117 7 0 chr6 42209804 42209949 -107307088 + B1_Mus1 SINE Alu 1 146 -2 2 907 238 234 91 30 chr6 42210177 42210243 -107306794 + ID4 SINE ID 2 71 -12 2 907 220 172 35 0 chr6 42211024 42211082 -107305955 + CT-rich Low_complexity Low_complexity 1 60 0 2 907 480 250 54 39 chr6 42212623 42212822 -107304215 - LTRIS_Mm LTR ERV1 0 628 315 2 907 22 0 0 0 chr6 42218693 42218715 -107298322 + GC_rich Low_complexity Low_complexity 1 22 0 2 907 284 259 39 0 chr6 42219989 42220005 -107297032 + B1_Mur2 SINE Alu 55 103 -46 2 907 300 238 0 0 chr6 42220005 42220068 -107296969 + ID_B1 SINE B4 149 211 -13 2 907 284 259 39 0 chr6 42220068 42220080 -107296957 + B1_Mur2 SINE Alu 104 148 -1 2 907 180 0 0 0 chr6 42221680 42221700 -107295337 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 2 907 300 53 0 0 chr6 42221873 42221911 -107295126 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 907 383 347 0 39 chr6 42222127 42222268 -107294769 + B1F SINE Alu 2 137 -12 2 907 230 0 33 0 chr6 42222268 42222298 -107294739 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 907 383 347 0 39 chr6 42222298 42222309 -107294728 + B1F SINE Alu 138 148 -1 2 907 214 240 0 0 chr6 42223285 42223335 -107293702 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 907 332 322 5 133 chr6 42223335 42223546 -107293491 - B4 SINE B4 0 292 109 2 907 502 200 71 37 chr6 42224076 42224224 -107292813 - MTEa LTR MaLR 0 379 193 2 907 2060 225 141 0 chr6 42224217 42224750 -107292287 - RCHARR1 DNA MER1_type -250 724 117 2 907 2698 271 138 110 chr6 42224752 42226251 -107290786 - MTEa-int LTR MaLR -20 1560 20 2 907 569 289 215 64 chr6 42226269 42226595 -107290442 - MTEa LTR MaLR -1 378 4 2 907 302 356 174 0 chr6 42227391 42227540 -107289497 + MIR SINE MIR 12 186 -76 2 907 185 255 113 31 chr6 42228302 42228399 -107288638 + L2b LINE L2 3269 3373 -2 2 907 1060 53 15 0 chr6 42228871 42229002 -107288035 + B1_Mus2 SINE Alu 2 134 -13 2 907 27 0 0 0 chr6 42229628 42229655 -107287382 + AT_rich Low_complexity Low_complexity 1 27 0 2 907 265 309 130 38 chr6 42231603 42231788 -107285249 + L2c LINE L2 2746 2947 -472 2 907 312 321 36 36 chr6 42231980 42232119 -107284918 + L2c LINE L2 3248 3386 -1 2 907 211 311 13 63 chr6 42232287 42232366 -107284671 + MIRm SINE MIR 199 273 -3 2 907 376 239 0 0 chr6 42234030 42234097 -107282940 + ID4_ SINE ID 6 72 -11 2 907 751 261 134 54 chr6 42234973 42235382 -107281655 - L1MA9 LINE L1 -2 6310 5869 2 907 430 271 122 29 chr6 42235437 42235642 -107281395 - L1MA9 LINE L1 -538 5774 5551 2 907 22 0 0 0 chr6 42236589 42236611 -107280426 + GC_rich Low_complexity Low_complexity 1 22 0 2 907 577 283 16 8 chr6 42237564 42237685 -107279352 + RSINE1 SINE B4 3 124 -41 2 907 270 0 0 0 chr6 42237687 42237717 -107279320 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 907 189 0 0 0 chr6 42238177 42238198 -107278839 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 2 907 789 193 14 0 chr6 42238199 42238344 -107278693 - B1_Mur3 SINE Alu -2 147 1 2 907 749 209 0 33 chr6 42238937 42239090 -107277947 - B1_Mur1 SINE Alu -1 148 1 2 907 22 94 0 0 chr6 42239546 42239610 -107277427 + AT_rich Low_complexity Low_complexity 1 64 0 2 907 332 294 109 7 chr6 42241931 42242068 -107274969 - MER20 DNA MER1_type -34 185 35 2 907 210 119 48 0 chr6 42242094 42242136 -107274901 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 2 907 414 214 44 11 chr6 42242145 42242235 -107274802 - B1F SINE Alu -1 148 56 2 907 194 289 94 55 chr6 42242678 42242867 -107274170 + L2b LINE L2 3192 3377 -49 2 907 200 208 0 54 chr6 42245072 42245128 -107271909 + L2c LINE L2 3189 3241 -146 2 907 1617 42 0 5 chr6 42251163 42251356 -107265681 - B2_Mm1t SINE B2 0 193 2 2 907 227 282 22 45 chr6 42252589 42252678 -107264359 - MLT1A1 LTR MaLR 0 408 322 2 907 293 276 40 0 chr6 42254535 42254611 -107262426 - ID4_ SINE ID 0 83 5 2 907 386 222 1 1 chr6 42256358 42256452 -107260585 - B1_Mur2 SINE Alu -7 142 20 2 907 719 282 122 35 chr6 42257742 42258087 -107258950 - MTEa LTR MaLR -4 375 1 2 907 1857 287 60 23 chr6 42258261 42258877 -107258160 + MER82 DNA MER2_type 15 653 0 2 907 216 0 0 0 chr6 42260246 42260270 -107256767 + (GGCTG)n Simple_repeat Simple_repeat 2 25 0 2 907 192 125 0 0 chr6 42260541 42260573 -107256464 + (TCC)n Simple_repeat Simple_repeat 3 34 0 2 907 609 180 0 59 chr6 42261307 42261425 -107255612 - PB1D9 SINE Alu 0 120 10 2 907 399 236 199 41 chr6 42261312 42261458 -107255579 - ID_B1 SINE B4 -2 222 54 2 907 278 339 133 0 chr6 42261869 42262034 -107255003 + MIR SINE MIR 66 252 -10 2 907 246 373 0 17 chr6 42263631 42263803 -107253234 + CT-rich Low_complexity Low_complexity 2 170 0 2 907 814 179 20 7 chr6 42269030 42269176 -107247861 + B1_Mur2 SINE Alu 1 148 -1 2 907 298 217 146 135 chr6 42269244 42269436 -107247601 - Charlie5 DNA MER1_type -2 2622 2429 2 907 635 255 42 37 chr6 42269605 42269796 -107247241 + B3A SINE B2 7 198 0 3 907 354 23 0 0 chr6 42270580 42270623 -107246414 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 907 228 111 0 0 chr6 42274624 42274660 -107242377 + (CCG)n Simple_repeat Simple_repeat 2 37 0 3 907 353 334 128 29 chr6 42275831 42276155 -107240882 - MLT1A1 LTR MaLR 0 408 20 3 907 420 20 0 0 chr6 42276381 42276430 -107240607 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 907 284 211 91 40 chr6 42276485 42276584 -107240453 + B1_Mur2 SINE Alu 38 141 -8 3 907 266 196 0 73 chr6 42276608 42276663 -107240374 + ID4 SINE ID 27 77 -6 3 907 490 133 181 0 chr6 42276663 42276768 -107240269 - MTD LTR MaLR -1 418 295 3 907 655 275 45 90 chr6 42277161 42277493 -107239544 + Charlie4a DNA MER1_type 5 321 -187 3 907 298 303 171 38 chr6 42277650 42277808 -107239229 - Lx8 LINE L1 -218 7255 7077 3 907 572 252 16 16 chr6 42277884 42278005 -107239032 + ID_B1 SINE B4 91 211 -13 3 907 743 240 32 25 chr6 42278006 42278199 -107238838 + B3 SINE B2 2 189 -4 3 907 899 225 80 0 chr6 42278729 42278929 -107238108 - B3 SINE B2 0 216 1 3 907 704 269 34 84 chr6 42278932 42279171 -107237866 - B4A SINE B4 -65 227 1 3 907 658 192 93 0 chr6 42279324 42279485 -107237552 + Lx9 LINE L1 7428 7603 -41 3 907 24 0 0 0 chr6 42279515 42279539 -107237498 + AT_rich Low_complexity Low_complexity 1 24 0 3 907 216 219 0 0 chr6 42280047 42280088 -107236949 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 3 907 292 314 23 0 chr6 42280127 42280213 -107236824 - B1F SINE Alu -15 134 47 3 907 1348 251 105 0 chr6 42280651 42280993 -107236044 + MTEa LTR MaLR 1 378 -1 3 907 263 244 41 82 chr6 42281266 42281364 -107235673 + MLT1A1 LTR MaLR 3 96 -312 3 907 623 282 35 0 chr6 42282509 42282651 -107234386 + B1F SINE Alu 1 147 -2 3 907 1093 200 23 23 chr6 42282651 42282866 -107234171 + B3 SINE B2 2 216 0 3 907 547 273 34 20 chr6 42282879 42283025 -107234012 + B1F1 SINE Alu 2 149 0 3 907 904 151 14 0 chr6 42283154 42283300 -107233737 - B1_Mus1 SINE Alu 0 148 1 3 907 28 61 0 15 chr6 42283359 42283391 -107233646 + AT_rich Low_complexity Low_complexity 1 32 0 3 907 1066 84 0 40 chr6 42283391 42283540 -107233497 + B1_Mus1 SINE Alu 1 143 -5 3 907 28 61 0 15 chr6 42283540 42283574 -107233463 + AT_rich Low_complexity Low_complexity 1 34 0 3 907 330 194 0 0 chr6 42283620 42283687 -107233350 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 907 675 269 55 15 chr6 42284180 42284380 -107232657 - B3A SINE B2 -3 213 6 3 907 377 277 21 11 chr6 42284424 42284519 -107232518 - RSINE1 SINE B4 -25 140 45 3 907 245 231 19 0 chr6 42284910 42284962 -107232075 - L2a LINE L2 -14 3412 3360 3 907 1185 62 93 0 chr6 42285017 42285179 -107231858 + B2_Mm1t SINE B2 4 180 -13 3 907 289 151 0 36 chr6 42285225 42285292 -107231745 + B2_Mm2 SINE B2 47 109 -107 3 907 424 261 54 0 chr6 42285385 42285496 -107231541 + B1_Mur1 SINE Alu 33 149 0 3 907 1031 228 27 27 chr6 42285739 42285960 -107231077 + URR1B DNA MER1_type 1 221 -4 3 907 788 308 42 63 chr6 42285947 42286280 -107230757 + ORR1E LTR MaLR 32 357 -2 3 907 344 267 12 0 chr6 42286284 42286370 -107230667 + ORR1E-int LTR MaLR 1 87 -1493 3 907 500 254 27 0 chr6 42286355 42286465 -107230572 - RMER20B LTR ERVK -514 113 1 3 907 464 292 15 55 chr6 42286938 42287078 -107229959 + ORR1E-int LTR MaLR 1384 1503 -77 3 907 1174 52 0 0 chr6 42287078 42287213 -107229824 + B1_Mus2 SINE Alu 2 136 -11 3 907 243 0 0 0 chr6 42287213 42287240 -107229797 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 907 464 289 14 82 chr6 42287240 42287271 -107229766 + ORR1E-int LTR MaLR 1504 1526 -54 3 907 572 316 68 73 chr6 42287271 42287626 -107229411 + ORR1E LTR MaLR 1 353 -6 3 907 195 42 0 0 chr6 42287647 42287671 -107229366 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 907 767 123 0 0 chr6 42287675 42287781 -107229256 - U6 snRNA snRNA 0 107 2 3 907 450 156 196 110 chr6 42288140 42288313 -107228724 + RMER15 LTR ERVL 340 527 -48 3 907 217 320 12 25 chr6 42288383 42288463 -107228574 - L2 LINE L2 -340 3079 3001 3 907 270 253 25 25 chr6 42288500 42288581 -107228456 - L2 LINE L2 -1859 1560 1480 3 907 2098 132 0 59 chr6 42288587 42288692 -107228345 + ORR1A3 LTR MaLR 1 104 -222 3 907 1449 48 21 26 chr6 42288692 42288885 -107228152 + B2_Mm2 SINE B2 1 192 -3 3 907 2098 132 0 59 chr6 42288885 42289117 -107227920 + ORR1A3 LTR MaLR 105 318 -8 3 907 455 312 165 39 chr6 42289185 42289572 -107227465 - L2 LINE L2 -2031 1388 953 3 907 1216 122 37 0 chr6 42289683 42289871 -107227166 - B2_Mm2 SINE B2 0 195 1 3 907 2420 126 237 78 chr6 42289872 42290396 -107226641 - RMER19C LTR ERVK -4 607 1 3 907 431 294 55 100 chr6 42290414 42290743 -107226294 + Lx8 LINE L1 7151 7464 -9 3 907 239 313 87 29 chr6 42290763 42290901 -107226136 + Charlie5 DNA MER1_type 2376 2521 -103 3 907 968 243 24 5 chr6 42290901 42291112 -107225925 + B3 SINE B2 2 216 0 3 907 824 311 249 25 chr6 42291216 42291863 -107225174 - L2 LINE L2 -2577 842 51 3 907 1389 69 11 5 chr6 42292021 42292211 -107224826 + B2_Mm1t SINE B2 2 192 -1 3 907 1876 98 137 10 chr6 42292280 42292579 -107224458 - ORR1B1 LTR MaLR -57 337 1 3 907 598 238 19 58 chr6 42294796 42294809 -107222228 - B1_Mur4 SINE Alu 0 150 138 3 907 287 45 45 0 chr6 42294809 42294853 -107222184 + (TCTG)n Simple_repeat Simple_repeat 1 46 0 3 907 598 238 19 58 chr6 42294853 42294949 -107222088 - B1_Mur4 SINE Alu -13 137 40 3 907 1284 96 19 33 chr6 42294949 42295041 -107221996 + L1_Mus4 LINE L1 6423 6518 -118 3 907 186 103 0 0 chr6 42295041 42295070 -107221967 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 907 1284 96 19 33 chr6 42295070 42295192 -107221845 + L1_Mus4 LINE L1 6519 6634 -2 3 907 598 238 19 58 chr6 42295192 42295237 -107221800 - B1_Mur4 SINE Alu -111 39 1 3 907 1526 246 48 66 chr6 42295361 42295647 -107221390 - MTD LTR MaLR -24 383 109 3 907 987 120 0 0 chr6 42295647 42295789 -107221248 + B1_Mus1 SINE Alu 2 143 -5 3 907 234 0 0 0 chr6 42295799 42295825 -107221212 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 3 907 1526 244 46 57 chr6 42295825 42295935 -107221102 - MTD LTR MaLR -301 118 1 3 907 352 250 28 0 chr6 42296006 42296078 -107220959 - ID4_ SINE ID -6 77 4 3 907 23 0 0 0 chr6 42296527 42296550 -107220487 + AT_rich Low_complexity Low_complexity 1 23 0 3 907 8605 11 2 0 chr6 42296550 42297771 -107219266 - L1Md_T LINE L1 0 6582 5360 3 907 661 331 108 20 chr6 42297822 42298173 -107218864 - LTR90A LTR LTR -594 382 1 3 907 189 107 0 0 chr6 42298996 42299024 -107218013 + (GAA)n Simple_repeat Simple_repeat 2 29 0 3 907 180 247 0 0 chr6 42301588 42301673 -107215364 + (CCCCAG)n Simple_repeat Simple_repeat 2 86 0 3 907 186 236 34 68 chr6 42302345 42302404 -107214633 - L2a LINE L2 -11 3415 3359 3 907 258 253 72 62 chr6 42303875 42303952 -107213085 + B1F SINE Alu 21 102 -18 3 907 558 43 0 0 chr6 42303952 42304021 -107213016 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 907 258 244 71 71 chr6 42304021 42304039 -107212998 + B1F SINE Alu 102 115 -34 3 907 450 53 0 0 chr6 42305493 42305550 -107211487 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 907 434 300 50 6 chr6 42309590 42309751 -107207286 - Tigger16b DNA Tigger -1 336 169 3 907 468 0 0 0 chr6 42313471 42313523 -107203514 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 907 180 0 0 0 chr6 42316363 42316383 -107200654 + (A)n Simple_repeat Simple_repeat 1 20 0 3 907 1348 92 22 0 chr6 42316469 42316653 -107200384 + B2_Mm2 SINE B2 1 188 -7 3 907 312 353 78 47 chr6 42316757 42316950 -107200087 - MIR SINE MIR -20 242 44 3 907 182 352 0 0 chr6 42318408 42318462 -107198575 - MIR SINE MIR -191 71 18 3 907 1533 62 10 0 chr6 42318720 42318913 -107198124 + B2_Mm2 SINE B2 1 195 0 3 907 22 35 0 0 chr6 42319354 42319383 -107197654 + AT_rich Low_complexity Low_complexity 1 29 0 3 907 226 299 169 49 chr6 42319949 42320132 -107196905 + LTR48 LTR ERV1 577 781 -6 3 907 23 33 0 0 chr6 42323130 42323160 -107193877 + GC_rich Low_complexity Low_complexity 1 30 0 3 907 231 36 0 0 chr6 42324682 42324710 -107192327 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 907 1351 232 18 12 chr6 42325132 42325435 -107191602 + MTD LTR MaLR 12 301 -106 3 907 242 326 35 0 chr6 42325527 42325613 -107191424 + MIRc SINE MIR 43 131 -137 3 907 248 289 39 13 chr6 42325694 42325771 -107191266 + MIR SINE MIR 90 168 -94 3 907 347 331 184 32 chr6 42325947 42326290 -107190747 - L1ME1 LINE L1 -2 6177 5783 3 907 288 255 120 13 chr6 42326989 42327139 -107189898 - MIR SINE MIR 0 262 97 3 907 336 324 54 27 chr6 42327221 42327405 -107189632 - L1ME3A LINE L1 -150 6023 5835 3 907 517 311 101 75 chr6 42327888 42328015 -107189022 + MLT1A LTR MaLR 1 128 -246 3 907 193 29 29 29 chr6 42328015 42328050 -107188987 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 907 1193 51 0 0 chr6 42328050 42328188 -107188849 - B1_Mus2 SINE Alu -9 138 1 3 907 517 285 82 73 chr6 42328188 42328416 -107188621 + MLT1A LTR MaLR 129 368 -11 3 907 234 238 0 0 chr6 42328416 42328458 -107188579 + polypurine Low_complexity Low_complexity 2 43 0 3 907 472 166 29 1 chr6 42329734 42329843 -107187194 + B1_Mur2 SINE Alu 39 149 0 3 907 915 217 158 46 chr6 42329982 42330311 -107186726 - ORR1D2 LTR MaLR -4 366 1 3 907 215 217 28 28 chr6 42331097 42331168 -107185869 + CT-rich Low_complexity Low_complexity 3 73 0 3 907 397 340 41 41 chr6 42331499 42331717 -107185320 - L2a LINE L2 -4 3422 3205 3 907 741 243 47 26 chr6 42332489 42332666 -107184371 + B3A SINE B2 1 180 -18 3 907 327 85 0 0 chr6 42332666 42332713 -107184324 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 907 741 243 47 26 chr6 42332713 42332725 -107184312 + B3A SINE B2 181 194 -4 3 907 1257 97 29 0 chr6 42333047 42333222 -107183815 + B2_Mm2 SINE B2 2 181 -14 3 907 1173 75 0 0 chr6 42333237 42333383 -107183654 - B1_Mus2 SINE Alu 0 147 2 3 907 24 32 0 0 chr6 42333397 42333428 -107183609 + AT_rich Low_complexity Low_complexity 1 31 0 3 907 492 257 63 84 chr6 42334982 42335173 -107181864 + B3A SINE B2 1 187 -11 3 907 699 272 44 6 chr6 42336057 42336238 -107180799 - B3A SINE B2 -4 194 7 3 907 239 267 24 85 chr6 42336165 42336247 -107180790 - B4A SINE B4 -211 81 5 4 908 741 76 0 0 chr6 42336256 42336361 -107180676 + (TATATG)n Simple_repeat Simple_repeat 6 110 0 4 908 1127 173 38 0 chr6 42336361 42336546 -107180491 - B3 SINE B2 -24 192 1 4 908 240 298 73 44 chr6 42336637 42336774 -107180263 + ORR1E LTR MaLR 7 147 -212 4 908 252 0 0 0 chr6 42336937 42336965 -107180072 + (T)n Simple_repeat Simple_repeat 1 28 0 4 908 897 311 108 38 chr6 42337232 42337677 -107179360 - MER20B DNA MER1_type -299 484 9 4 908 363 333 60 35 chr6 42338251 42338604 -107178433 + MLT1A1 LTR MaLR 1 408 0 4 908 721 223 54 0 chr6 42338910 42339040 -107177997 + RSINE1 SINE B4 7 143 -22 4 908 396 0 0 0 chr6 42339215 42339259 -107177778 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 908 673 338 15 0 chr6 42339332 42339533 -107177504 - ID_B1 SINE B4 -9 215 12 4 908 21 0 0 0 chr6 42340276 42340297 -107176740 + AT_rich Low_complexity Low_complexity 1 21 0 4 908 273 57 0 0 chr6 42341129 42341164 -107175873 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 908 241 84 41 27 chr6 42341273 42341346 -107175691 + A-rich Low_complexity Low_complexity 2 75 0 4 908 222 174 0 0 chr6 42341461 42341507 -107175530 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 908 301 240 148 37 chr6 42341536 42341644 -107175393 - HAL1 LINE L1 -191 2316 2197 4 908 1200 228 90 22 chr6 42341829 42342201 -107174836 + MTD LTR MaLR 1 405 -14 4 908 270 0 0 0 chr6 42342201 42342231 -107174806 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 908 333 131 0 0 chr6 42342328 42342389 -107174648 + (TCCC)n Simple_repeat Simple_repeat 2 62 0 4 908 288 77 0 0 chr6 42342644 42342683 -107174354 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 908 227 298 51 34 chr6 42343108 42343226 -107173811 - Tigger5 DNA MER2_type -1 2405 2286 4 908 452 333 82 33 chr6 42343237 42343420 -107173617 - Tigger5 DNA MER2_type -2207 199 8 4 908 358 300 93 6 chr6 42343483 42343644 -107173393 - HAL1 LINE L1 -1955 552 378 4 908 264 313 0 0 chr6 42343682 42343749 -107173288 - ID4 SINE ID -1 82 16 4 908 394 359 68 42 chr6 42343826 42344018 -107173019 - HAL1 LINE L1 -2259 248 52 4 908 1146 49 21 0 chr6 42344471 42344615 -107172422 - B1_Mus1 SINE Alu 0 148 2 4 908 384 294 11 0 chr6 42344617 42344709 -107172328 + B3A SINE B2 22 114 -84 4 908 692 268 41 31 chr6 42345023 42345219 -107171818 - B3A SINE B2 0 198 1 4 908 271 317 58 19 chr6 42345220 42345323 -107171714 - PB1D10 SINE Alu -2 115 9 4 908 691 201 234 6 chr6 42346205 42346380 -107170657 - ID_B1 SINE B4 -1 223 9 4 908 1056 96 150 0 chr6 42347817 42347984 -107169053 + B2_Mm2 SINE B2 1 192 -3 4 908 2080 245 129 29 chr6 42348021 42348701 -107168336 + Lx8 LINE L1 6576 7323 -150 4 908 615 71 0 0 chr6 42348705 42348790 -107168247 + (CAAG)n Simple_repeat Simple_repeat 3 87 0 4 908 252 130 0 0 chr6 42349336 42349382 -107167655 + Lx8 LINE L1 7422 7467 -6 4 908 539 295 86 14 chr6 42349398 42349512 -107167525 + Lx8 LINE L1 7127 7239 -234 4 908 639 128 0 0 chr6 42349512 42349621 -107167416 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 908 539 295 86 14 chr6 42349621 42349716 -107167321 + Lx8 LINE L1 7240 7351 -122 4 908 573 15 0 0 chr6 42349768 42349834 -107167203 + (CATA)n Simple_repeat Simple_repeat 2 67 0 4 908 224 196 39 0 chr6 42351540 42351591 -107165446 + CT-rich Low_complexity Low_complexity 1 53 0 4 908 1306 50 0 27 chr6 42351591 42351776 -107165261 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 908 261 0 0 0 chr6 42351778 42351807 -107165230 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 4 908 531 0 0 0 chr6 42351807 42351865 -107165172 + (TTTC)n Simple_repeat Simple_repeat 1 59 0 4 908 284 304 115 3 chr6 42352160 42352269 -107164768 - PB1D10 SINE Alu -29 120 2 4 908 316 287 48 27 chr6 42352367 42352514 -107164523 + Charlie7a DNA MER1_type 39 188 -84 4 908 417 20 0 0 chr6 42352724 42352774 -107164263 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 908 349 227 0 96 chr6 42352812 42352895 -107164142 - B3A SINE B2 -119 79 5 4 908 465 288 86 7 chr6 42353001 42353141 -107163896 - RSINE1 SINE B4 -13 152 2 4 908 954 239 0 21 chr6 42353432 42353620 -107163417 + B3 SINE B2 27 210 -6 4 908 411 277 88 18 chr6 42354093 42354207 -107162830 - B4A SINE B4 -168 124 3 4 908 312 70 0 0 chr6 42354240 42354283 -107162754 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 908 498 274 15 23 chr6 42354299 42354430 -107162607 - RSINE1 SINE B4 -34 131 2 4 908 206 350 82 0 chr6 42355028 42355125 -107161912 + MIR SINE MIR 132 236 -26 4 908 432 317 11 11 chr6 42358100 42358282 -107158755 + Lx9 LINE L1 7248 7429 -215 4 908 2215 165 45 8 chr6 42358421 42358823 -107158214 + MTC LTR MaLR 5 421 0 4 908 650 268 126 42 chr6 42358984 42359245 -107157792 + B4A SINE B4 4 286 -6 4 908 255 61 0 0 chr6 42359252 42359285 -107157752 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 908 393 153 0 0 chr6 42359313 42359385 -107157652 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 908 22 56 0 0 chr6 42359425 42359461 -107157576 + AT_rich Low_complexity Low_complexity 1 36 0 4 908 830 226 39 5 chr6 42359490 42359695 -107157342 - B3 SINE B2 0 216 5 4 908 289 300 133 0 chr6 42359707 42359797 -107157240 - ID_B1 SINE B4 -6 218 117 4 908 180 277 45 30 chr6 42360383 42360450 -107156587 + MIRm SINE MIR 52 119 -157 4 908 856 291 15 5 chr6 42361163 42361367 -107155670 - B3 SINE B2 -10 206 1 4 908 234 283 33 0 chr6 42361487 42361547 -107155490 + ID4 SINE ID 3 64 -19 4 908 591 168 75 8 chr6 42361841 42361961 -107155076 + B1F SINE Alu 21 148 -1 4 908 204 40 0 0 chr6 42362436 42362461 -107154576 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 908 570 257 128 0 chr6 42362461 42362640 -107154397 - B3 SINE B2 -13 203 2 4 908 902 162 200 6 chr6 42363157 42363337 -107153700 + B3 SINE B2 2 216 0 4 908 332 280 134 8 chr6 42363650 42363769 -107153268 + L1MC LINE L1 5496 5629 -2253 4 908 408 362 62 24 chr6 42363897 42364316 -107152721 - ERVL-E-int LTR ERVL -4958 709 275 4 908 234 0 0 0 chr6 42364513 42364539 -107152498 + (T)n Simple_repeat Simple_repeat 1 26 0 4 908 1174 62 0 0 chr6 42364539 42364685 -107152352 - B1_Mm SINE Alu 0 147 2 4 908 591 342 36 5 chr6 42366127 42366347 -107150690 + L2a LINE L2 2662 2888 -531 4 908 322 301 241 22 chr6 42366488 42366832 -107150205 + L2a LINE L2 2958 3426 0 4 908 261 0 0 0 chr6 42366957 42366986 -107150051 + (T)n Simple_repeat Simple_repeat 1 29 0 4 908 649 293 132 30 chr6 42367088 42367215 -107149822 + ID_B1 SINE B4 1 135 -89 4 908 3014 37 50 0 chr6 42367215 42367592 -107149445 - MTA_Mm LTR MaLR 0 396 1 4 908 649 293 132 30 chr6 42367592 42367661 -107149376 + ID_B1 SINE B4 136 217 -7 4 908 228 122 0 0 chr6 42368677 42368718 -107148319 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 908 616 353 14 17 chr6 42368744 42369032 -107148005 - B4A SINE B4 -4 288 2 4 908 267 277 53 92 chr6 42369995 42370126 -107146911 - RMER12 LTR ERVK -451 871 746 4 908 230 357 131 0 chr6 42370117 42370201 -107146836 - PB1D10 SINE Alu -17 100 6 4 908 635 270 54 0 chr6 42370273 42370421 -107146616 - RSINE1 SINE B4 -8 157 2 4 908 410 208 0 0 chr6 42370424 42370501 -107146536 - PB1D10 SINE Alu 0 117 41 4 908 270 0 0 0 chr6 42371028 42371058 -107145979 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 908 302 233 0 0 chr6 42371872 42371932 -107145105 + Lx6 LINE L1 7062 7121 -339 4 908 985 97 6 13 chr6 42371935 42372092 -107144945 + (TTTTC)n Simple_repeat Simple_repeat 3 158 0 4 908 806 202 0 6 chr6 42372093 42372272 -107144765 + CT-rich Low_complexity Low_complexity 3 180 0 4 908 1036 254 40 11 chr6 42372310 42372588 -107144449 + Lx6 LINE L1 7147 7432 -28 4 908 477 319 148 5 chr6 42373980 42374197 -107142840 - MLT1E LTR MaLR -3 650 403 4 908 484 309 88 0 chr6 42374348 42374565 -107142472 - Lx8 LINE L1 -360 7113 6878 4 908 561 267 81 10 chr6 42375416 42375711 -107141326 - L1M4 LINE L1 -844 5302 4987 4 908 189 0 0 0 chr6 42375983 42376004 -107141033 + (T)n Simple_repeat Simple_repeat 1 21 0 4 908 887 330 93 44 chr6 42376350 42376943 -107140094 + L2 LINE L2 2239 2860 -559 4 908 259 432 23 58 chr6 42377082 42377401 -107139636 + LTR78 LTR ERV1 89 397 -907 4 908 1287 221 142 16 chr6 42377401 42377773 -107139264 + MTD LTR MaLR 1 419 0 4 908 259 432 23 58 chr6 42377773 42377799 -107139238 + LTR78 LTR ERV1 398 422 -882 4 908 374 313 57 74 chr6 42377837 42378013 -107139024 + MTD LTR MaLR 80 252 -167 4 908 234 267 0 32 chr6 42378687 42378749 -107138288 + ID4_ SINE ID 8 67 -16 4 908 546 266 91 29 chr6 42378918 42379127 -107137910 + MER2 DNA MER2_type 23 244 -101 4 908 245 379 19 0 chr6 42379594 42379697 -107137340 + L1MA9 LINE L1 284 388 -6780 4 908 662 289 6 12 chr6 42379826 42379986 -107137051 - ID_B1 SINE B4 -65 227 77 4 908 7446 58 2 5 chr6 42380022 42381198 -107135839 - L1_Mus1 LINE L1 -1 6566 5393 4 908 239 277 33 25 chr6 42381231 42381353 -107135684 + L1MA9 LINE L1 1961 2083 -5015 4 908 1032 296 23 25 chr6 42381358 42381798 -107135239 + L1MA9 LINE L1 5782 6220 -941 4 908 268 309 43 7 chr6 42381770 42381910 -107135127 + L1M3c LINE L1 979 1123 -5018 4 908 531 271 0 0 chr6 42381913 42382057 -107134980 + L1M3c LINE L1 4821 4964 -1240 4 908 761 254 92 46 chr6 42382069 42382397 -107134640 + L1MA9 LINE L1 6284 6628 -705 4 908 372 43 0 0 chr6 42382397 42382443 -107134594 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 908 761 254 92 46 chr6 42382443 42382482 -107134555 + L1MA9 LINE L1 6629 6667 -666 4 908 319 337 110 69 chr6 42382486 42382878 -107134159 - MLT1A1 LTR MaLR 0 408 1 4 908 1070 288 47 44 chr6 42382882 42383431 -107133606 + L1MA9 LINE L1 6667 7217 -116 4 908 324 342 181 20 chr6 42383737 42383886 -107133151 + MLT1E1A LTR MaLR 292 464 -216 4 908 387 0 0 0 chr6 42384110 42384153 -107132884 + (CCTA)n Simple_repeat Simple_repeat 4 46 0 4 908 243 0 0 0 chr6 42386114 42386141 -107130896 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 908 26 0 0 0 chr6 42386901 42386927 -107130110 + AT_rich Low_complexity Low_complexity 1 26 0 5 908 475 195 16 0 chr6 42387134 42387257 -107129780 + CT-rich Low_complexity Low_complexity 3 127 0 5 908 611 295 75 11 chr6 42387337 42387604 -107129433 + B4A SINE B4 1 284 -8 5 908 3453 23 5 0 chr6 42387773 42388167 -107128870 + MTA_Mm LTR MaLR 1 396 0 5 908 9125 36 6 0 chr6 42388167 42389259 -107127778 + MTA_Mm-int LTR MaLR 1 1098 0 5 908 3468 23 2 0 chr6 42389259 42389653 -107127384 + MTA_Mm LTR MaLR 1 395 -1 5 908 425 317 7 20 chr6 42390056 42390075 -107126962 + ID_B1 SINE B4 79 224 0 5 908 713 194 16 0 chr6 42390075 42390204 -107126833 + B1_Mus1 SINE Alu 18 148 0 5 908 211 269 58 29 chr6 42390243 42390312 -107126725 + MIR SINE MIR 74 144 -118 5 908 29 28 0 0 chr6 42390376 42390412 -107126625 + AT_rich Low_complexity Low_complexity 1 36 0 5 908 753 43 0 0 chr6 42390991 42391084 -107125953 + (TCCC)n Simple_repeat Simple_repeat 4 96 0 5 908 491 292 39 0 chr6 42391084 42391214 -107125823 - B1_Mus2 SINE Alu -1 146 12 5 908 396 0 0 0 chr6 42391952 42391996 -107125041 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 908 186 43 0 0 chr6 42392259 42392282 -107124755 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 5 908 387 0 0 0 chr6 42393737 42393780 -107123257 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 908 208 294 113 38 chr6 42394069 42394175 -107122862 + L2c LINE L2 3274 3387 0 5 908 269 109 22 0 chr6 42394655 42394701 -107122336 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 908 329 282 93 8 chr6 42395022 42395140 -107121897 + MER5B DNA MER1_type 1 128 -50 5 908 26 0 0 0 chr6 42395181 42395207 -107121830 + AT_rich Low_complexity Low_complexity 1 26 0 5 908 336 161 0 0 chr6 42395967 42396048 -107120989 + CT-rich Low_complexity Low_complexity 2 82 0 5 908 425 339 0 16 chr6 42396092 42396218 -107120819 - B1F2 SINE Alu -22 127 4 5 908 315 0 0 0 chr6 42396371 42396406 -107120631 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 908 254 87 22 0 chr6 42396463 42396509 -107120528 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 908 1184 55 0 14 chr6 42396509 42396657 -107120380 - B1_Mus2 SINE Alu 0 147 2 5 908 207 315 14 0 chr6 42396743 42396816 -107120221 + MIRc SINE MIR 187 260 -8 5 908 1272 219 35 21 chr6 42396835 42397285 -107119752 + RLTR16 LTR ERVK 1 493 -12 5 908 239 114 0 22 chr6 42397686 42397731 -107119306 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 908 925 251 39 0 chr6 42399185 42399392 -107117645 - B3 SINE B2 -1 215 1 5 908 486 0 0 0 chr6 42399405 42399459 -107117578 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 5 908 6936 89 12 19 chr6 42399594 42400632 -107116405 - Lx3_Mus LINE L1 -8 7001 5972 5 908 346 88 0 0 chr6 42400661 42400718 -107116319 + L1_Mus2 LINE L1 6509 6565 -1 5 908 33815 43 0 3 chr6 42400751 42405922 -107111115 + L1Md_T LINE L1 338 5589 -297 5 908 8407 36 0 0 chr6 42405923 42406918 -107110119 + L1Md_T LINE L1 5591 6585 0 5 908 1762 123 89 3 chr6 42406921 42407007 -107110030 + L1_Mur1 LINE L1 5270 5356 -530 5 908 3292 93 29 29 chr6 42407007 42407492 -107109545 + L1_Mus4 LINE L1 6149 6633 -3 5 908 1762 123 89 3 chr6 42407492 42407732 -107109305 + L1_Mur1 LINE L1 5357 5623 -263 5 908 609 219 115 27 chr6 42407731 42407914 -107109123 - RMER1C Other Other -11 1331 1133 5 908 930 218 27 0 chr6 42408820 42409008 -107108029 - B3 SINE B2 -20 196 4 5 908 597 28 0 0 chr6 42409898 42409969 -107107068 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 908 29 28 0 0 chr6 42411779 42411815 -107105222 + AT_rich Low_complexity Low_complexity 1 36 0 5 908 558 319 7 7 chr6 42414225 42414364 -107102673 + RSINE1 SINE B4 1 139 -26 5 908 322 353 38 67 chr6 42416538 42416778 -107100259 + Lx8 LINE L1 7062 7294 -179 5 908 1843 234 28 191 chr6 42416790 42417518 -107099519 - RMER19C LTR ERVK 0 611 3 5 908 527 294 82 0 chr6 42417794 42418025 -107099012 + Lx9 LINE L1 7248 7497 -147 5 908 249 323 98 70 chr6 42418310 42418453 -107098584 - MIR3 SINE MIR -5 203 57 5 908 479 284 52 9 chr6 42418717 42418965 -107098072 - L1M2 LINE L1 -1077 5066 4799 5 908 303 293 68 11 chr6 42419012 42419188 -107097849 + L1MB5 LINE L1 5804 5989 -185 5 908 279 0 0 0 chr6 42419218 42419249 -107097788 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 5 908 213 319 0 14 chr6 42419922 42419992 -107097045 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 908 1081 203 24 5 chr6 42420131 42420339 -107096698 - B3 SINE B2 0 216 5 5 908 226 367 13 0 chr6 42420340 42420419 -107096618 - B4 SINE B4 -193 99 20 5 908 396 0 0 0 chr6 42420591 42420635 -107096402 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 5 908 708 259 14 0 chr6 42420649 42420788 -107096249 - RSINE1 SINE B4 -13 152 12 5 908 687 327 0 6 chr6 42425329 42425495 -107091542 + RSINE1 SINE B4 1 165 0 5 908 6697 99 26 7 chr6 42426879 42427959 -107089078 - L1_Mus3 LINE L1 -7 6631 5532 5 908 19543 139 12 8 chr6 42427957 42429826 -107087211 - L1_Mus3 LINE L1 -880 5003 3143 5 908 189 74 0 0 chr6 42429826 42429853 -107087184 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 908 19543 139 12 8 chr6 42429853 42431519 -107085518 - L1_Mus3 LINE L1 -2741 3142 1455 5 908 716 256 0 38 chr6 42431535 42431746 -107085291 - L1VL2 LINE L1 -6036 299 97 5 908 321 347 38 61 chr6 42432556 42432817 -107084220 + Lx8 LINE L1 7050 7304 -169 5 908 3145 154 87 11 chr6 42433511 42434064 -107082973 - RLTR17 LTR ERVK 0 692 98 5 908 500 264 63 3 chr6 42434630 42434855 -107082182 - L1M2 LINE L1 -1075 5068 4765 5 908 34 0 0 0 chr6 42435383 42435417 -107081620 + AT_rich Low_complexity Low_complexity 1 34 0 5 908 484 343 49 0 chr6 42435633 42435776 -107081261 - RSINE1 SINE B4 -13 152 3 5 908 243 0 0 0 chr6 42435944 42435971 -107081066 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 908 366 327 37 7 chr6 42437419 42437566 -107079471 + ID_B1 SINE B4 70 222 -2 5 908 811 250 37 2 chr6 42438833 42439127 -107077910 + Lx8 LINE L1 5625 5975 -1669 5 908 258 342 120 12 chr6 42440281 42440476 -107076561 + MIRb SINE MIR 16 232 -36 5 908 1559 60 0 5 chr6 42440493 42440694 -107076343 - L1_Mus1 LINE L1 -1 6566 6367 5 908 38782 31 0 0 chr6 42442556 42448980 -107068057 - L1Md_T LINE L1 0 6585 66 5 908 1474 298 32 52 chr6 42449163 42450226 -107066811 + L1MA5 LINE L1 4995 6002 -1471 5 908 21 0 0 0 chr6 42450363 42450384 -107066653 + AT_rich Low_complexity Low_complexity 1 21 0 5 908 508 333 33 49 chr6 42450737 42450920 -107066117 - B3 SINE B2 -3 213 34 5 908 240 292 16 62 chr6 42451462 42451590 -107065447 + L1MA5 LINE L1 7346 7467 -6 5 908 7601 65 5 0 chr6 42451712 42452601 -107064436 + RLTR13B1 LTR ERVK 1 893 0 5 908 542 316 11 33 chr6 42452687 42452870 -107064167 + B4A SINE B4 1 179 -113 5 908 222 278 73 62 chr6 42452796 42452892 -107064145 + PB1D7 SINE Alu 22 118 -2 5 908 459 0 0 0 chr6 42452985 42453036 -107064001 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 908 7824 51 6 5 chr6 42453866 42454833 -107062204 - L1Md_F2 LINE L1 0 6582 5615 5 908 358 361 14 20 chr6 42454974 42455121 -107061916 - ORR1E LTR MaLR -210 149 4 5 908 980 299 107 55 chr6 42455321 42455600 -107061437 + MTD LTR MaLR 1 306 -113 5 908 2356 178 115 46 chr6 42455600 42455635 -107061402 + RMER4B LTR ERVK 1 35 -550 5 908 459 63 0 0 chr6 42455635 42455698 -107061339 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 908 591 51 0 0 chr6 42455698 42455776 -107061261 + (GA)n Simple_repeat Simple_repeat 2 80 0 5 908 2356 178 115 46 chr6 42455776 42456286 -107060751 + RMER4B LTR ERVK 36 584 -1 5 908 980 277 49 29 chr6 42456286 42456403 -107060634 + MTD LTR MaLR 301 405 -14 5 908 507 143 22 0 chr6 42456835 42456926 -107060111 - Lx3A LINE L1 -6 6975 6883 5 908 246 220 0 0 chr6 42457811 42457870 -107059167 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 908 280 265 10 153 chr6 42457873 42457971 -107059066 - B4 SINE B4 0 292 209 5 908 802 258 44 15 chr6 42457973 42458178 -107058859 - B3 SINE B2 0 216 6 5 908 729 318 15 19 chr6 42458665 42458870 -107058167 - B4 SINE B4 -81 211 8 5 908 203 330 116 11 chr6 42459651 42459746 -107057291 - MIRm SINE MIR -168 108 4 5 908 277 374 0 9 chr6 42460044 42460152 -107056885 + MLT1D LTR MaLR 1 107 -398 5 908 2133 279 41 24 chr6 42460153 42460408 -107056629 - Lx5 LINE L1 -4 7046 6804 5 908 636 14 0 0 chr6 42460408 42460481 -107056556 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 908 2133 258 30 21 chr6 42460481 42461215 -107055822 - Lx5 LINE L1 -566 6894 6150 5 908 257 333 117 11 chr6 42461268 42461362 -107055675 + MLT1D LTR MaLR 313 416 -89 5 908 1975 166 105 3 chr6 42462803 42463136 -107053901 - ORR1B2 LTR MaLR 0 367 1 5 908 361 308 88 35 chr6 42463509 42463761 -107053276 + MIRb SINE MIR 3 262 0 5 908 1425 220 135 49 chr6 42464614 42465082 -107051955 + RMER5 LTR ERV1 1 508 -26 5 908 8150 43 9 0 chr6 42465244 42466393 -107050644 - L1Md_F3 LINE L1 -1 6583 5426 5 908 21 0 0 0 chr6 42466933 42466954 -107050083 + AT_rich Low_complexity Low_complexity 1 21 0 5 113 457 316 33 33 chr6 42467149 42467362 -107049675 + B3 SINE B2 3 215 -1 5 909 26 0 0 0 chr6 42467362 42467388 -107049649 + AT_rich Low_complexity Low_complexity 1 26 0 5 909 204 355 0 0 chr6 42467888 42467964 -107049073 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 5 909 264 273 0 0 chr6 42467905 42467960 -107049077 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 909 31 0 0 0 chr6 42469461 42469492 -107047545 + AT_rich Low_complexity Low_complexity 1 31 0 5 909 180 0 0 0 chr6 42470925 42470945 -107046092 + (A)n Simple_repeat Simple_repeat 1 20 0 5 909 230 341 87 11 chr6 42470946 42471038 -107045999 + MER5B DNA MER1_type 58 156 -22 5 909 678 284 0 21 chr6 42471264 42471408 -107045629 + RSINE1 SINE B4 2 142 -23 5 909 396 0 0 0 chr6 42471422 42471466 -107045571 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 909 657 0 0 0 chr6 42471829 42471902 -107045135 + (GA)n Simple_repeat Simple_repeat 2 74 0 5 909 378 365 89 53 chr6 42471925 42472229 -107044808 + MER74B LTR ERVL 192 506 -116 6 909 234 233 96 0 chr6 42472606 42472679 -107044358 + L2b LINE L2 2097 2176 -1243 6 909 207 114 0 0 chr6 42472849 42472884 -107044153 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 6 909 511 268 8 8 chr6 42472904 42473028 -107044009 - RSINE1 SINE B4 -21 144 21 6 909 436 272 142 36 chr6 42473678 42473903 -107043134 + L1MA6 LINE L1 6033 6281 -22 6 909 281 246 0 28 chr6 42473957 42474028 -107043009 + ID4 SINE ID 6 74 -9 6 909 330 259 89 18 chr6 42474334 42474503 -107042534 - L1MC LINE L1 -2448 5434 5254 6 909 3366 60 15 5 chr6 42474605 42475008 -107042029 + MTB_Mm LTR MaLR 1 407 0 6 909 199 308 38 25 chr6 42475032 42475112 -107041925 + L2b LINE L2 3040 3120 -255 6 909 655 218 136 30 chr6 42475952 42475975 -107041062 - Lx7 LINE L1 -350 7346 7323 6 909 228 67 0 0 chr6 42475975 42476005 -107041032 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 6 909 655 231 130 39 chr6 42476005 42476218 -107040819 - Lx7 LINE L1 -146 7327 7110 6 909 340 191 22 0 chr6 42476251 42476340 -107040697 + GA-rich Low_complexity Low_complexity 2 92 0 6 909 33 56 0 0 chr6 42476389 42476443 -107040594 + AT_rich Low_complexity Low_complexity 1 54 0 6 909 3934 59 38 2 chr6 42476683 42477160 -107039877 + L1_Mus3 LINE L1 6140 6633 -5 6 909 26 0 0 0 chr6 42477160 42477186 -107039851 + AT_rich Low_complexity Low_complexity 1 26 0 6 909 2430 134 16 0 chr6 42477260 42477640 -107039397 - ORR1B1 LTR MaLR -8 386 1 6 909 3240 152 71 9 chr6 42477640 42478205 -107038832 - ORR1B1-int LTR MaLR 0 1509 910 6 909 781 211 103 0 chr6 42478611 42478786 -107038251 + Lx6 LINE L1 6709 6901 -559 6 909 28897 126 17 17 chr6 42478873 42485137 -107031900 + L1_Mus3 LINE L1 365 6634 -4 6 909 1031 226 245 14 chr6 42485142 42485291 -107031746 + Lx6 LINE L1 7005 7189 -271 6 909 285 89 0 0 chr6 42485291 42485336 -107031701 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 909 1031 226 245 14 chr6 42485336 42485545 -107031492 + Lx6 LINE L1 7190 7445 -15 6 909 197 122 49 0 chr6 42485855 42485896 -107031141 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 6 909 211 111 43 22 chr6 42489616 42489662 -107027375 + GA-rich Low_complexity Low_complexity 2 48 0 6 909 293 211 18 0 chr6 42491013 42491070 -107025967 + B1_Mus2 SINE Alu 1 58 -89 6 909 522 0 0 0 chr6 42491108 42491166 -107025871 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 909 262 243 14 28 chr6 42491296 42491368 -107025669 - MIR SINE MIR -67 195 125 6 909 998 274 5 5 chr6 42491603 42491819 -107025218 + B3 SINE B2 1 216 0 6 909 402 262 39 52 chr6 42492336 42492489 -107024548 - RLTR42-int LTR ERVK -4197 1325 1175 6 909 528 30 0 0 chr6 42493181 42493247 -107023790 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 909 1249 68 0 0 chr6 42493414 42493560 -107023477 + B1_Mus2 SINE Alu 1 146 -1 6 909 789 110 0 0 chr6 42494121 42494239 -107022798 + (CCTA)n Simple_repeat Simple_repeat 1 118 0 6 909 249 307 29 19 chr6 42494298 42494401 -107022636 + CT-rich Low_complexity Low_complexity 2 105 0 6 909 276 316 110 19 chr6 42494493 42494673 -107022364 + MIR SINE MIR 48 247 -21 6 909 248 326 94 0 chr6 42495117 42495255 -107021782 - CR1_Mam LINE CR1 -911 1293 1143 6 909 299 243 0 0 chr6 42495665 42495735 -107021302 - CR1_Mam LINE CR1 -1506 698 629 6 909 452 311 174 37 chr6 42498142 42498879 -107018158 - L2a LINE L2 0 3426 2575 6 909 436 298 111 0 chr6 42499570 42499810 -107017227 - B4A SINE B4 -8 284 2 6 909 202 137 57 38 chr6 42499888 42499941 -107017096 + MIRc SINE MIR 196 249 -19 6 909 495 33 0 0 chr6 42500593 42500654 -107016383 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1 909 1148 37 0 0 chr6 42500693 42500828 -107016209 + B1_Mm SINE Alu 2 136 -11 2 909 257 0 30 0 chr6 42500828 42500861 -107016176 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 909 1577 187 98 15 chr6 42500947 42501283 -107015754 + ORR1D2 LTR MaLR 1 364 -6 4 909 22 35 0 0 chr6 42501386 42501415 -107015622 + AT_rich Low_complexity Low_complexity 1 29 0 5 909 24 53 0 0 chr6 42501812 42501850 -107015187 + AT_rich Low_complexity Low_complexity 1 38 0 6 909 756 190 56 25 chr6 42501894 42502033 -107015004 - B3 SINE B2 0 216 73 7 909 496 226 10 19 chr6 42502033 42502137 -107014900 + RLTR18B LTR ERVK 1 103 -409 8 909 1144 313 39 23 chr6 42502137 42502569 -107014468 + Lx6 LINE L1 6966 7404 -56 9 909 915 109 0 0 chr6 42502656 42502794 -107014243 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 1 909 385 289 34 26 chr6 42502797 42502914 -107014123 + RLTR18B LTR ERVK 84 201 -311 8 909 1151 289 59 11 chr6 42502986 42503357 -107013680 + RLTR18B LTR ERVK 124 512 0 1 909 298 278 56 0 chr6 42503360 42503432 -107013605 - B3A SINE B2 -122 76 1 7 909 226 194 194 0 chr6 42503829 42503896 -107013141 + Lx7 LINE L1 7232 7311 -385 1 909 416 276 47 16 chr6 42503948 42504098 -107012939 - RMER1A Other Other -901 129 1 1 909 922 257 54 61 chr6 42504113 42504606 -107012431 - RMER1B Other Other -795 547 27 1 909 333 0 0 0 chr6 42504791 42504828 -107012209 + (TAA)n Simple_repeat Simple_repeat 3 39 0 1 909 549 264 62 8 chr6 42504844 42505157 -107011880 - L1M2 LINE L1 -725 5572 5233 1 909 1795 189 75 11 chr6 42505261 42505619 -107011418 - ORR1C2 LTR MaLR 0 384 4 1 909 1135 260 74 96 chr6 42506168 42506628 -107010409 - RMER4A LTR ERVK 0 466 17 1 909 331 214 9 37 chr6 42506685 42506792 -107010245 + L1MA9 LINE L1 6188 6291 -21 1 909 1822 134 77 62 chr6 42507503 42507892 -107009145 + RLTR9F LTR ERVK 1 395 -20 2 909 2158 74 44 7 chr6 42508590 42508888 -107008149 - RLTR27 LTR ERVK 0 309 1 2 909 516 259 25 17 chr6 42509115 42509233 -107007804 + B3 SINE B2 98 216 0 2 909 22 35 0 0 chr6 42509665 42509694 -107007343 + AT_rich Low_complexity Low_complexity 1 29 0 2 909 301 240 126 63 chr6 42509797 42509836 -107007201 - PB1D7 SINE Alu 0 120 82 2 909 2083 172 43 15 chr6 42509836 42510232 -107006805 + MTB_Mm LTR MaLR 1 407 0 2 909 301 240 126 63 chr6 42510232 42510303 -107006734 - PB1D7 SINE Alu -39 81 3 2 909 182 376 45 9 chr6 42510641 42510751 -107006286 + MIRc SINE MIR 3 116 -152 2 909 211 330 135 45 chr6 42510803 42511003 -107006034 + MIRc SINE MIR 25 245 -23 2 909 907 194 106 0 chr6 42511329 42511509 -107005528 - B3 SINE B2 -16 200 2 2 909 226 283 15 84 chr6 42511568 42511699 -107005338 - RMER15 LTR ERVL -329 246 125 2 909 201 39 0 0 chr6 42512096 42512122 -107004915 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 909 369 284 155 66 chr6 42512232 42512413 -107004624 - B4 SINE B4 -83 209 13 3 909 276 308 23 0 chr6 42512667 42512797 -107004240 - HAL1 LINE L1 -414 2093 1961 3 909 212 152 0 42 chr6 42513725 42513773 -107003264 + CT-rich Low_complexity Low_complexity 1 46 0 3 909 742 355 100 22 chr6 42515049 42515728 -107001309 - MLT1I-int LTR MaLR -567 842 111 3 909 227 328 121 64 chr6 42515793 42515933 -107001104 - MLT1I LTR MaLR -34 377 230 3 909 1354 310 39 12 chr6 42517414 42517829 -106999208 - RCHARR1 DNA MER1_type -548 426 1 3 909 423 0 0 0 chr6 42518173 42518220 -106998817 + (TTA)n Simple_repeat Simple_repeat 1 47 0 3 909 21 71 0 0 chr6 42519132 42519174 -106997863 + AT_rich Low_complexity Low_complexity 1 42 0 3 909 302 288 102 23 chr6 42519239 42519255 -106997782 - B4A SINE B4 -154 138 1 3 909 527 270 0 9 chr6 42519255 42519367 -106997670 - B3A SINE B2 -87 111 1 3 909 317 305 64 76 chr6 42519368 42520028 -106997009 - L1MD LINE L1 -973 5173 4522 4 909 372 286 67 15 chr6 42520424 42520559 -106996478 - B1F SINE Alu 0 149 8 4 909 4999 98 9 36 chr6 42521148 42521907 -106995130 - Lx LINE L1 0 6654 5916 4 909 947 80 64 21 chr6 42521970 42522111 -106994926 + B1_Mus2 SINE Alu 1 147 0 4 909 303 394 7 14 chr6 42522184 42522328 -106994709 - L2 LINE L2 -1004 2415 2273 4 909 5996 65 2 2 chr6 42522615 42523433 -106993604 + L1Md_F2 LINE L1 4769 5586 -297 4 909 7545 65 6 1 chr6 42523433 42524414 -106992623 + L1Md_F2 LINE L1 5587 6572 -10 4 909 374 254 91 102 chr6 42524548 42524745 -106992292 + B3A SINE B2 1 195 -3 4 909 491 341 52 80 chr6 42525525 42525812 -106991225 - ORR1E LTR MaLR -70 289 11 4 909 241 295 11 64 chr6 42527299 42527393 -106989644 - L2b LINE L2 -1 3374 3286 4 909 1123 298 68 38 chr6 42527445 42527972 -106989065 + Lx8 LINE L1 6929 7471 -2 4 909 25 0 0 0 chr6 42528081 42528106 -106988931 + AT_rich Low_complexity Low_complexity 1 25 0 5 909 33 56 0 0 chr6 42528115 42528169 -106988868 + AT_rich Low_complexity Low_complexity 1 54 0 5 909 198 404 33 42 chr6 42528269 42528481 -106988556 + L2 LINE L2 2674 2883 -536 5 909 248 306 73 41 chr6 42528490 42528735 -106988302 + L1MD LINE L1 4040 4292 -1854 5 909 228 289 0 38 chr6 42528824 42528903 -106988134 + Lx8 LINE L1 7099 7174 -299 5 909 2364 302 106 31 chr6 42528930 42530239 -106986798 + L1MA4 LINE L1 3499 4941 -1202 5 909 387 0 0 0 chr6 42530239 42530282 -106986755 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 909 2364 312 100 29 chr6 42530282 42530963 -106986074 + L1MA4 LINE L1 4911 5615 -265 5 909 467 220 11 0 chr6 42530963 42531054 -106985983 + MTE2a LTR MaLR 1 92 -287 5 909 2219 105 86 35 chr6 42531054 42531460 -106985577 - Lx LINE L1 -25 6629 6203 5 909 1270 239 44 22 chr6 42531460 42531777 -106985260 + MTE2a LTR MaLR 56 379 0 5 909 516 288 30 42 chr6 42531798 42532038 -106984999 + L1MA4 LINE L1 5682 5921 -382 5 909 30 0 0 0 chr6 42532460 42532490 -106984547 + AT_rich Low_complexity Low_complexity 1 30 0 5 909 372 94 0 0 chr6 42532490 42532543 -106984494 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 909 2306 283 64 37 chr6 42532543 42533453 -106983584 - Lx8 LINE L1 -35 7438 6505 6 909 200 143 23 23 chr6 42533611 42533654 -106983383 + G-rich Low_complexity Low_complexity 1 43 0 6 909 302 385 54 0 chr6 42534261 42534391 -106982646 - L2b LINE L2 -36 3339 3203 6 909 261 275 14 0 chr6 42534522 42534591 -106982446 + ID4 SINE ID 5 74 -9 6 909 564 325 72 58 chr6 42534679 42534970 -106982067 + ORR1E LTR MaLR 62 356 -3 6 909 339 137 0 0 chr6 42535475 42535548 -106981489 + (T)n Simple_repeat Simple_repeat 1 73 0 6 909 1203 68 0 0 chr6 42535548 42535694 -106981343 - B1_Mus2 SINE Alu 0 147 2 6 909 474 18 0 0 chr6 42536072 42536127 -106980910 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 909 449 337 33 33 chr6 42536135 42536408 -106980629 - B4A SINE B4 -18 274 2 6 909 2670 166 55 26 chr6 42540495 42540754 -106976283 + RLTR12B LTR ERVK 2 270 -258 7 909 648 0 0 0 chr6 42540754 42540826 -106976211 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 909 2670 166 55 26 chr6 42540826 42541074 -106975963 + RLTR12B LTR ERVK 271 524 -4 7 909 354 247 0 13 chr6 42542105 42542183 -106974854 - RLTR12B LTR ERVK -4 524 448 7 909 378 0 0 0 chr6 42542183 42542225 -106974812 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 909 377 171 0 5 chr6 42542705 42542773 -106974264 + B1_Mur3 SINE Alu 50 143 -6 7 909 629 165 102 0 chr6 42544979 42545106 -106971931 - B1_Mus1 SINE Alu 0 148 9 7 909 513 110 0 0 chr6 42545404 42545486 -106971551 + (ATTG)n Simple_repeat Simple_repeat 2 83 0 7 909 219 316 20 30 chr6 42545487 42545588 -106971449 - L2a LINE L2 0 3426 3327 7 909 537 295 59 63 chr6 42545684 42545970 -106971067 - B4A SINE B4 -3 289 5 7 909 1452 196 98 12 chr6 42546162 42546498 -106970539 + ORR1B2 LTR MaLR 1 365 -2 7 909 918 237 51 150 chr6 42548085 42548502 -106968535 + MTE2a LTR MaLR 1 357 -2 8 909 748 169 209 37 chr6 42549527 42549718 -106967319 + URR1B DNA MER1_type 2 225 0 8 909 691 272 0 0 chr6 42550443 42550579 -106966458 + RSINE1 SINE B4 3 138 -27 8 909 715 130 14 0 chr6 42550581 42550727 -106966310 + (TC)n Simple_repeat Simple_repeat 1 148 0 8 909 828 261 52 19 chr6 42550740 42550951 -106966086 - ID_B1 SINE B4 -2 222 5 8 909 331 256 22 88 chr6 42551002 42551139 -106965898 + MLT1A1 LTR MaLR 1 128 -280 8 909 233 223 23 130 chr6 42551952 42552052 -106964985 + MTE2a LTR MaLR 8 97 -322 8 909 3303 250 25 38 chr6 42552078 42553439 -106963598 - RMER1A Other Other -6 1024 3 8 909 249 311 0 0 chr6 42553768 42553858 -106963179 - RMER1B Other Other -916 150 61 8 909 720 254 64 104 chr6 42553990 42554240 -106962797 + MTE2a LTR MaLR 79 318 -61 8 909 657 0 0 0 chr6 42554250 42554323 -106962714 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 8 909 1095 118 0 0 chr6 42554325 42554554 -106962483 + (TTCC)n Simple_repeat Simple_repeat 1 229 0 9 909 6277 58 18 1 chr6 42554589 42555442 -106961595 - L1_Mus1 LINE L1 -2 6565 5709 9 909 1000 149 31 5 chr6 42555915 42556110 -106960927 + L1_Mm LINE L1 3831 4030 -1853 9 909 2009 110 3 26 chr6 42556110 42556398 -106960639 + L1_Mus4 LINE L1 6326 6611 -25 9 909 1418 94 0 6 chr6 42556398 42556580 -106960457 - B2_Mm2 SINE B2 -14 181 1 9 909 2009 110 3 26 chr6 42556580 42556600 -106960437 + L1_Mus4 LINE L1 6612 6627 -9 9 909 26 30 0 0 chr6 42556637 42556670 -106960367 + AT_rich Low_complexity Low_complexity 1 33 0 9 909 514 320 100 44 chr6 42556746 42557017 -106960020 - B4A SINE B4 -6 286 1 9 909 237 317 144 33 chr6 42557365 42558129 -106958908 + L1M5 LINE L1 3253 4101 -2045 9 909 342 297 54 62 chr6 42558195 42558340 -106958697 - B3 SINE B2 -6 192 50 9 909 2112 241 28 20 chr6 42558340 42558835 -106958202 - Lx7 LINE L1 -431 7265 6767 9 909 707 254 107 8 chr6 42558878 42559120 -106957917 - L1M2 LINE L1 -2212 3931 3666 1 909 2208 209 27 72 chr6 42559142 42559653 -106957384 + RMER13A LTR ERVK 372 859 -1 1 909 1327 66 6 0 chr6 42559662 42559844 -106957193 + L1_Mur2 LINE L1 1842 2024 -3853 1 909 1474 213 92 6 chr6 42559847 42560173 -106956864 - L1_Mur2 LINE L1 -6178 534 181 1 909 4562 129 34 21 chr6 42560173 42560884 -106956153 + Lx4A LINE L1 6339 7058 0 1 909 2215 187 40 70 chr6 42561351 42561823 -106955214 + RLTR18B LTR ERVK 13 470 -42 1 909 1459 147 4 26 chr6 42562916 42563146 -106953891 + URR1B DNA MER1_type 1 225 0 1 909 180 0 0 0 chr6 42563430 42563450 -106953587 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1 909 7039 109 27 14 chr6 42563458 42564512 -106952525 - Lx2A LINE L1 -1 7007 5941 1 909 3174 155 21 10 chr6 42565049 42565570 -106951467 + RLTR11A2 LTR ERVK 1 527 0 1 909 349 187 65 126 chr6 42565705 42565919 -106951118 - Lx7 LINE L1 -13 7683 7483 1 909 202 274 12 61 chr6 42565955 42566118 -106950919 + A-rich Low_complexity Low_complexity 3 157 0 1 909 5251 207 33 31 chr6 42566170 42567287 -106949750 - Lx7 LINE L1 -326 7370 6252 1 909 204 40 0 0 chr6 42567524 42567549 -106949488 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 1 909 24893 23 4 0 chr6 42567551 42571079 -106945958 - L1Md_A LINE L1 -14 6568 3027 1 909 8485 18 11 0 chr6 42571078 42572295 -106944742 + L1Md_A LINE L1 5322 6551 -31 1 909 813 242 188 18 chr6 42573036 42573318 -106943719 - Lx8 LINE L1 0 7473 7144 1 909 396 91 0 0 chr6 42577556 42577622 -106939415 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 909 309 130 0 0 chr6 42578672 42578718 -106938319 + B1_Mur4 SINE Alu 6 51 -99 1 909 242 242 83 12 chr6 42578718 42578748 -106938289 + ID_B1 SINE B4 98 168 -56 1 909 496 277 23 102 chr6 42580999 42581160 -106935877 + RSINE1 SINE B4 3 150 -15 1 909 333 0 0 0 chr6 42581160 42581197 -106935840 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 909 496 277 23 102 chr6 42581197 42581212 -106935825 + RSINE1 SINE B4 151 165 0 1 909 520 145 52 52 chr6 42581533 42581649 -106935388 - B2_Mm2 SINE B2 -14 181 66 1 909 4981 205 40 37 chr6 42581649 42582778 -106934259 + Lx2B LINE L1 5869 7000 0 1 909 2686 31 16 0 chr6 42582784 42583103 -106933934 + L1Md_F2 LINE L1 5263 5586 -297 1 909 8750 42 2 0 chr6 42583103 42584097 -106932940 + L1Md_F2 LINE L1 5587 6582 0 1 909 1150 243 35 32 chr6 42584097 42584155 -106932882 + L1MC LINE L1 5616 5671 -673 1 909 182 37 0 36 chr6 42584254 42584282 -106932755 + (CAAAC)n Simple_repeat Simple_repeat 5 31 0 1 909 226 305 64 37 chr6 42586304 42586413 -106930624 - MIRb SINE MIR -132 136 25 1 909 21 82 0 0 chr6 42586766 42586815 -106930222 + AT_rich Low_complexity Low_complexity 1 49 0 1 909 437 274 67 80 chr6 42587003 42587241 -106929796 + L1MA7 LINE L1 6028 6262 -29 1 909 1655 81 0 64 chr6 42587297 42587548 -106929489 + L1_Mus4 LINE L1 6402 6636 0 1 909 281 342 80 93 chr6 42587561 42587861 -106929176 - ORR1E LTR MaLR 0 359 64 1 909 180 0 0 0 chr6 42589011 42589031 -106928006 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 909 321 26 0 0 chr6 42589031 42589068 -106927969 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 909 384 230 202 49 chr6 42590641 42590824 -106926213 - MER58A DNA MER1_type -5 219 9 1 909 418 132 0 24 chr6 42590971 42591009 -106926028 + polypyrimidine Low_complexity Low_complexity 50 85 0 1 909 1090 106 0 16 chr6 42591009 42591192 -106925845 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 909 418 132 0 24 chr6 42591192 42591238 -106925799 + polypyrimidine Low_complexity Low_complexity 4 49 0 1 909 250 345 59 77 chr6 42591657 42592148 -106924889 + L2b LINE L2 2935 3408 -18 1 909 315 0 0 0 chr6 42593301 42593336 -106923701 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 1 909 7107 92 5 0 chr6 42595602 42596578 -106920459 - L1_Mm LINE L1 -1147 4736 3756 1 909 7545 93 2 5 chr6 42596580 42597610 -106919427 + L1_Mm LINE L1 4761 5787 -96 1 113 34754 98 18 12 chr6 42597794 42604054 -106912983 - L1Md_F2 LINE L1 0 6582 295 1 910 6240 94 5 1 chr6 42604054 42604849 -106912188 + L1_Mus1 LINE L1 5770 6567 0 1 910 1457 248 27 16 chr6 42605050 42605490 -106911547 - Lx5 LINE L1 0 7050 6460 1 910 2528 192 85 24 chr6 42605473 42606050 -106910987 - Lx5 LINE L1 -698 6352 5741 1 910 1454 123 57 0 chr6 42606047 42606275 -106910762 - L1_Mur2 LINE L1 -1635 4242 4002 1 910 2270 173 2 22 chr6 42606266 42606710 -106910327 + L1_Mur2 LINE L1 3548 3982 -1895 1 910 651 293 121 40 chr6 42607402 42607750 -106909287 + MLT1B LTR MaLR 15 390 0 1 910 1003 257 86 15 chr6 42607850 42608119 -106908918 + B4 SINE B4 1 288 -4 1 910 1806 191 64 20 chr6 42608559 42608640 -106908397 - ORR1C1 LTR MaLR 0 378 304 1 910 4915 153 110 10 chr6 42608640 42608850 -106908187 + RMER19B LTR ERVK 1 241 -661 1 910 477 0 0 0 chr6 42608850 42608903 -106908134 + (CAA)n Simple_repeat Simple_repeat 2 54 0 1 910 4915 153 110 10 chr6 42608903 42609376 -106907661 + RMER19B LTR ERVK 242 742 -160 1 910 300 27 0 0 chr6 42609376 42609413 -106907624 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 910 4915 153 110 10 chr6 42609413 42609548 -106907489 + RMER19B LTR ERVK 743 900 -2 1 910 1806 191 64 20 chr6 42609548 42609824 -106907213 - ORR1C1 LTR MaLR -75 303 5 1 910 321 47 0 0 chr6 42610371 42610414 -106906623 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1 910 1307 213 139 70 chr6 42610653 42611107 -106905930 + MTD-int LTR MaLR 774 1258 0 1 910 1623 244 58 14 chr6 42611107 42611504 -106905533 + MTD LTR MaLR 1 393 -26 1 910 757 324 91 22 chr6 42611890 42612209 -106904828 + LTR16B2 LTR ERVL 1 341 -121 1 910 469 319 71 71 chr6 42614234 42614278 -106902759 + B3A SINE B2 1 44 -154 1 910 3725 5 0 0 chr6 42614278 42614691 -106902346 + L1Md_A LINE L1 6170 6582 0 1 910 469 297 63 90 chr6 42614691 42614868 -106902169 + B3A SINE B2 45 216 0 1 910 1049 256 86 31 chr6 42615221 42615596 -106901441 + MTD LTR MaLR 1 405 -14 1 910 816 274 5 19 chr6 42615775 42615987 -106901050 - B3 SINE B2 -7 209 1 1 910 513 106 19 9 chr6 42616172 42616277 -106900760 + (TA)n Simple_repeat Simple_repeat 2 107 0 1 910 715 340 155 14 chr6 42616696 42617186 -106899851 + MER90a LTR ERV1 56 614 0 1 910 458 319 75 42 chr6 42618027 42618292 -106898745 - HAL1 LINE L1 -8 2499 2226 1 910 410 349 109 45 chr6 42618951 42619326 -106897711 - HAL1 LINE L1 -726 1781 1383 1 910 652 189 0 20 chr6 42620509 42620660 -106896377 + L1Md_A LINE L1 6435 6582 0 1 910 182 250 75 0 chr6 42620974 42621014 -106896023 - L4 LINE RTE -701 1328 1286 1 910 504 386 9 5 chr6 42621037 42621261 -106895776 + MIR SINE MIR 8 232 -30 1 910 22 35 0 0 chr6 42621287 42621316 -106895721 + AT_rich Low_complexity Low_complexity 1 29 0 1 910 201 119 0 45 chr6 42621319 42621363 -106895674 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 910 243 61 0 0 chr6 42621387 42621420 -106895617 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 910 649 255 7 7 chr6 42622191 42622345 -106894692 - RSINE1 SINE B4 -7 158 5 1 910 343 16 78 0 chr6 42622374 42622438 -106894599 + (CAAAAA)n Simple_repeat Simple_repeat 2 70 0 1 910 579 307 23 60 chr6 42625513 42625853 -106891184 + Lx6 LINE L1 7137 7427 -33 1 910 1249 101 26 21 chr6 42625853 42626045 -106890992 + B2_Mm1t SINE B2 1 193 0 1 910 859 295 62 8 chr6 42630605 42630961 -106886076 + L1M2 LINE L1 5361 5735 -556 1 910 295 318 67 53 chr6 42631106 42631315 -106885722 - L1MC LINE L1 -1053 5093 4882 1 910 481 288 49 28 chr6 42631493 42631636 -106885401 + RSINE1 SINE B4 3 148 -17 1 910 431 245 48 21 chr6 42631650 42631838 -106885199 + Tigger7 DNA MER2_type 2204 2396 -95 1 910 3968 36 2 0 chr6 42632101 42632573 -106884464 - L1Md_F3 LINE L1 -1 6583 6111 1 910 407 276 0 96 chr6 42632636 42632772 -106884265 + ID_B1 SINE B4 95 217 -7 1 910 227 338 64 15 chr6 42632812 42633016 -106884021 - L1MC LINE L1 -2126 4020 3807 1 910 321 26 0 0 chr6 42633035 42633073 -106883964 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 910 363 121 0 0 chr6 42633174 42633232 -106883805 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 910 757 319 17 71 chr6 42633237 42633531 -106883506 - B4A SINE B4 -13 279 2 1 910 288 263 60 26 chr6 42633577 42633694 -106883343 - L1MC LINE L1 -2517 3629 3509 1 910 225 200 0 22 chr6 42633694 42633740 -106883297 + (CATA)n Simple_repeat Simple_repeat 4 48 0 1 910 261 75 0 0 chr6 42633740 42633780 -106883257 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 910 354 143 0 0 chr6 42634028 42634091 -106882946 + (TTA)n Simple_repeat Simple_repeat 1 63 0 1 910 634 241 29 36 chr6 42634091 42634229 -106882808 - B1_Mur1 SINE Alu -10 139 3 1 910 358 253 130 17 chr6 42634310 42634611 -106882426 - L1MC LINE L1 -2638 3508 3174 1 910 596 354 11 45 chr6 42637281 42637492 -106879545 + MLT1C LTR MaLR 182 384 -83 1 910 861 205 168 0 chr6 42637492 42637682 -106879355 - URR1A DNA MER1_type 0 226 5 1 910 596 354 11 45 chr6 42637682 42637757 -106879280 + MLT1C LTR MaLR 385 458 -9 1 910 267 216 0 0 chr6 42638673 42638724 -106878313 + ID_B1 SINE B4 174 224 0 1 910 188 259 68 167 chr6 42640104 42640266 -106876771 - MIR SINE MIR -59 203 58 1 910 562 257 129 57 chr6 42640316 42640344 -106876693 - B3 SINE B2 -6 210 181 1 910 2212 165 68 2 chr6 42640344 42640739 -106876298 + MTC LTR MaLR 1 421 0 1 910 562 257 129 57 chr6 42640739 42640904 -106876133 - B3 SINE B2 -36 180 3 1 910 180 0 0 0 chr6 42643296 42643316 -106873721 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 910 37 0 0 0 chr6 42643925 42643962 -106873075 + AT_rich Low_complexity Low_complexity 1 37 0 1 910 185 133 66 16 chr6 42645498 42645559 -106871478 + CT-rich Low_complexity Low_complexity 1 64 0 1 910 23 0 0 0 chr6 42645602 42645625 -106871412 + AT_rich Low_complexity Low_complexity 1 23 0 1 910 403 295 0 0 chr6 42645772 42645867 -106871170 - PB1D10 SINE Alu -20 97 3 1 910 23 92 0 0 chr6 42645925 42645990 -106871047 + AT_rich Low_complexity Low_complexity 1 65 0 1 910 1251 242 75 59 chr6 42646484 42646857 -106870180 + MTE2b LTR MaLR 1 379 0 1 910 472 253 86 70 chr6 42647030 42647217 -106869820 - B3A SINE B2 -5 193 4 1 910 647 162 13 83 chr6 42647861 42648025 -106869012 + ORR1C2 LTR MaLR 1 161 -198 1 910 284 204 0 0 chr6 42648003 42648057 -106868980 + ORR1C2 LTR MaLR 306 359 -15 1 910 232 217 13 80 chr6 42648080 42648155 -106868882 + ORR1E LTR MaLR 5 74 -300 1 910 287 309 45 178 chr6 42648203 42648490 -106868547 + ORR1E LTR MaLR 96 344 -15 1 910 391 350 54 79 chr6 42649309 42649842 -106867195 + L1MEg LINE L1 620 1139 -4980 2 910 495 61 24 12 chr6 42649878 42649961 -106867076 + L1Md_F2 LINE L1 6487 6570 -12 2 910 237 43 64 0 chr6 42650118 42650165 -106866872 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 2 910 1850 125 125 0 chr6 42650369 42650680 -106866357 - ORR1B2 LTR MaLR 0 367 18 2 910 264 59 0 0 chr6 42650908 42650942 -106866095 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 910 1152 151 91 14 chr6 42651482 42651691 -106865346 - URR1B DNA MER1_type 0 225 1 2 910 245 29 0 29 chr6 42651832 42651867 -106865170 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 910 390 69 0 0 chr6 42651879 42651937 -106865100 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 2 910 561 281 117 0 chr6 42651965 42652136 -106864901 + B3A SINE B2 8 198 0 2 910 629 282 125 30 chr6 42652156 42652788 -106864249 + L1MEg LINE L1 1122 1813 -4412 2 910 319 285 13 93 chr6 42652942 42653093 -106863944 + B4 SINE B4 1 139 -153 2 910 447 304 0 0 chr6 42653628 42653740 -106863297 + PB1D7 SINE Alu 1 112 -8 2 910 29 0 0 0 chr6 42653745 42653774 -106863263 + AT_rich Low_complexity Low_complexity 1 29 0 2 910 401 328 73 19 chr6 42653899 42654160 -106862877 + L1M5 LINE L1 5320 5594 -579 2 910 228 245 101 10 chr6 42654342 42654441 -106862596 + Lx8 LINE L1 7358 7465 -8 2 910 2462 83 18 10 chr6 42655066 42655455 -106861582 + MusHAL1 LINE L1 1694 2085 -627 2 910 1101 57 14 0 chr6 42655479 42655620 -106861417 + B1_Mm SINE Alu 2 144 -3 2 910 210 37 0 0 chr6 42655620 42655647 -106861390 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 910 305 301 183 36 chr6 42655917 42656141 -106860896 + L1MD LINE L1 3469 3725 -2421 2 910 413 236 37 19 chr6 42656310 42656418 -106860619 - B3A SINE B2 -7 191 82 2 910 313 317 23 54 chr6 42656610 42656740 -106860297 + L1MC LINE L1 4107 4232 -1914 2 910 293 325 150 19 chr6 42657119 42657279 -106859758 - B3A SINE B2 -16 182 2 2 910 426 380 25 54 chr6 42657329 42657568 -106859469 - B4A SINE B4 -60 232 1 2 910 240 303 101 41 chr6 42657912 42658154 -106858883 + L1M5 LINE L1 5415 5669 -571 2 910 408 318 157 107 chr6 42658208 42658712 -106858325 + MLT1F2 LTR MaLR 32 560 0 2 910 459 0 0 0 chr6 42660249 42660300 -106856737 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2 910 466 340 137 38 chr6 42660534 42660876 -106856161 - MLT1D LTR MaLR -17 488 113 2 910 180 77 0 0 chr6 42661999 42662025 -106855012 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 2 910 704 247 125 66 chr6 42662047 42662247 -106854790 + B4 SINE B4 3 216 -76 2 910 266 0 29 0 chr6 42662247 42662281 -106854756 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 910 704 247 125 66 chr6 42662281 42662336 -106854701 + B4 SINE B4 217 272 -20 2 910 615 67 0 0 chr6 42662338 42662427 -106854610 + (CA)n Simple_repeat Simple_repeat 2 90 0 2 910 23 0 0 0 chr6 42663224 42663247 -106853790 + AT_rich Low_complexity Low_complexity 1 23 0 2 910 3346 20 8 15 chr6 42663258 42663657 -106853380 + MTA_Mm LTR MaLR 1 396 0 2 910 243 0 0 0 chr6 42664479 42664506 -106852531 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 910 2371 218 68 26 chr6 42664723 42665342 -106851695 - RLTR17 LTR ERVK -77 615 1 2 910 41 21 0 0 chr6 42665919 42665967 -106851070 + AT_rich Low_complexity Low_complexity 1 48 0 2 910 356 316 144 0 chr6 42666010 42666149 -106850888 + RSINE1 SINE B4 3 161 -4 2 910 273 215 30 30 chr6 42666991 42667125 -106849912 - L1MEc LINE L1 -5596 804 671 2 910 529 263 178 36 chr6 42667242 42667467 -106849570 + MER2 DNA MER2_type 2 258 -87 2 910 579 29 0 0 chr6 42667798 42667867 -106849170 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 910 247 355 21 0 chr6 42668450 42668543 -106848494 - MLT1N2 LTR MaLR -14 548 454 2 910 929 236 9 9 chr6 42668841 42669068 -106847969 - L1_Mur3 LINE L1 -6688 1024 798 2 910 2798 111 141 12 chr6 42669059 42669570 -106847467 - Lx4A LINE L1 -700 6358 5782 2 910 1734 201 82 0 chr6 42669595 42669999 -106847038 - L1_Mur3 LINE L1 -7160 552 116 2 910 4130 142 15 1 chr6 42670049 42670712 -106846325 + Lx LINE L1 5981 6652 -2 2 910 226 320 91 14 chr6 42671022 42671231 -106845806 - L1MD LINE L1 -3419 2727 2503 2 910 267 217 0 0 chr6 42672738 42672798 -106844239 + GA-rich Low_complexity Low_complexity 1 60 0 2 910 513 99 0 0 chr6 42673702 42673783 -106843254 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 910 719 267 67 8 chr6 42673849 42674025 -106843012 + Lx6 LINE L1 5971 6146 -1314 2 910 2584 182 51 131 chr6 42674025 42674689 -106842348 + RMER19C LTR ERVK 1 611 0 2 910 719 267 67 8 chr6 42674689 42674750 -106842287 + Lx6 LINE L1 6147 6222 -1238 2 910 2143 244 136 28 chr6 42674790 42675436 -106841601 + Lx6 LINE L1 6741 7456 -4 2 910 452 269 0 15 chr6 42675433 42675565 -106841472 - Lx6 LINE L1 -19 7441 7312 2 910 269 26 26 0 chr6 42676097 42676135 -106840902 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2 910 2983 225 33 109 chr6 42676138 42677071 -106839966 - Lx7 LINE L1 -184 7512 6651 2 910 1030 37 72 14 chr6 42677427 42677565 -106839472 + B1_Mm SINE Alu 2 147 0 2 910 324 192 103 0 chr6 42678595 42678673 -106838364 - Lx6 LINE L1 -14 7446 7361 2 910 2512 52 6 9 chr6 42678683 42679010 -106838027 + IAPEY2_LTR LTR ERVK 32 357 0 2 910 1939 244 38 13 chr6 42679010 42679479 -106837558 - Lx6 LINE L1 -97 7363 6883 2 910 995 251 74 19 chr6 42679469 42679778 -106837259 - Lx6 LINE L1 -1370 6090 5765 2 910 354 338 28 20 chr6 42679782 42680138 -106836899 + L1_Mur3 LINE L1 65 423 -7305 2 910 722 256 5 10 chr6 42680785 42680994 -106836043 + L1_Mur3 LINE L1 903 1110 -6618 2 910 680 194 14 29 chr6 42681007 42681317 -106835720 + L1_Mur3 LINE L1 1021 1378 -4502 2 910 5562 158 69 14 chr6 42681306 42682473 -106834564 - L1_Mur2 LINE L1 -1960 3917 2687 2 910 1555 188 13 134 chr6 42682473 42682854 -106834183 + RMER19B LTR ERVK 1 335 -567 2 910 1013 64 57 6 chr6 42684109 42684266 -106832771 - RMER12 LTR ERVK -587 735 571 2 910 3938 139 20 5 chr6 42684266 42684916 -106832121 - RMER12 LTR ERVK -662 660 1 2 910 5247 187 20 16 chr6 42684916 42686136 -106830901 + L1_Mur3 LINE L1 2511 3734 -2146 2 910 1890 208 7 84 chr6 42686182 42686355 -106830682 + RLTR25A LTR ERVK 3 143 -960 2 910 1149 89 0 0 chr6 42686355 42686501 -106830536 - B1_Mus1 SINE Alu -2 146 1 2 910 1890 208 7 84 chr6 42686501 42686757 -106830280 + RLTR25A LTR ERVK 144 399 -704 2 910 1627 210 110 48 chr6 42686758 42687238 -106829799 + RLTR25A LTR ERVK 519 1028 0 2 910 3226 173 6 67 chr6 42687238 42687327 -106829710 + L1_Mur3 LINE L1 3809 3881 -1999 2 910 537 174 430 0 chr6 42687327 42687476 -106829561 + B3 SINE B2 1 213 -3 2 910 3226 173 6 67 chr6 42687476 42688172 -106828865 + L1_Mur3 LINE L1 3882 4546 -1334 2 910 25 0 0 0 chr6 42689121 42689146 -106827891 + AT_rich Low_complexity Low_complexity 1 25 0 2 910 512 244 289 0 chr6 42689351 42689624 -106827413 - Lx8 LINE L1 -163 7310 6959 2 910 320 262 0 15 chr6 42689718 42689784 -106827253 - tRNA-Ala-GCA tRNA tRNA -9 66 2 2 910 510 46 0 0 chr6 42690542 42690607 -106826430 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 910 674 263 77 48 chr6 42692939 42693147 -106823890 - B3 SINE B2 -2 214 1 2 910 270 116 0 0 chr6 42693510 42693553 -106823484 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 910 2787 186 45 47 chr6 42696369 42696963 -106820074 + RMER13A LTR ERVK 268 860 0 2 910 2509 177 18 7 chr6 42697324 42697778 -106819259 + RLTR28 LTR ERVL 1 459 -65 2 910 1324 331 41 5 chr6 42698256 42698842 -106818195 - Lx8 LINE L1 -273 7200 6594 2 910 12421 138 21 2 chr6 42698935 42701905 -106815132 + L1_Mus4 LINE L1 3530 6543 -93 2 910 21 0 0 0 chr6 42701905 42701926 -106815111 + AT_rich Low_complexity Low_complexity 1 21 0 2 910 53 57 0 0 chr6 42701995 42702083 -106814954 + AT_rich Low_complexity Low_complexity 1 88 0 2 910 27 0 0 0 chr6 42702113 42702140 -106814897 + AT_rich Low_complexity Low_complexity 1 27 0 2 910 3559 70 11 0 chr6 42702140 42702596 -106814441 - L1_Mus1 LINE L1 0 6567 6107 2 910 2107 39 0 15 chr6 42703304 42703565 -106813472 + L1_Mus1 LINE L1 6311 6567 0 2 910 855 345 114 36 chr6 42703626 42704479 -106812558 - L1ME1 LINE L1 -4 6175 5257 2 910 521 288 45 50 chr6 42704551 42704752 -106812285 - B3 SINE B2 -2 214 15 2 910 276 243 12 6 chr6 42705323 42705493 -106811544 + (TG)n Simple_repeat Simple_repeat 1 171 0 2 910 350 21 21 0 chr6 42705518 42705565 -106811472 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 910 337 294 76 70 chr6 42705680 42705852 -106811185 - ORR1E LTR MaLR -110 249 77 2 910 376 269 29 9 chr6 42707228 42707333 -106809704 - ID_B1 SINE B4 -1 223 117 2 910 24 0 0 0 chr6 42709394 42709418 -106807619 + AT_rich Low_complexity Low_complexity 1 24 0 2 910 198 0 0 0 chr6 42709945 42709967 -106807070 + (A)n Simple_repeat Simple_repeat 1 22 0 2 910 706 274 94 5 chr6 42710692 42710894 -106806143 + ID_B1 SINE B4 5 224 0 2 910 33747 35 0 0 chr6 42713583 42719221 -106797816 + L1Md_T LINE L1 2 5589 -297 2 910 8898 10 0 5 chr6 42719221 42720222 -106796815 + L1Md_T LINE L1 5590 6585 0 2 910 25 31 0 0 chr6 42720546 42720578 -106796459 + AT_rich Low_complexity Low_complexity 1 32 0 2 910 195 139 0 0 chr6 42721061 42721097 -106795940 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2 910 1040 252 18 5 chr6 42721275 42721498 -106795539 - MTC LTR MaLR 0 421 196 2 910 26067 20 0 27 chr6 42721500 42724635 -106792402 - L1Md_T LINE L1 0 6582 3468 2 910 737 43 0 0 chr6 42724635 42724729 -106792308 - BC1_Mm scRNA scRNA -56 96 3 2 910 216 0 0 0 chr6 42724735 42724759 -106792278 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 910 26067 16 0 33 chr6 42724759 42725571 -106791466 - L1Md_T LINE L1 -2423 3460 2650 2 910 960 0 0 9 chr6 42725571 42725679 -106791358 - U6 snRNA snRNA 0 107 1 2 910 893 202 11 6 chr6 42725680 42725859 -106791178 - MTC LTR MaLR -210 211 32 2 910 21 0 0 0 chr6 42725918 42725939 -106791098 + AT_rich Low_complexity Low_complexity 1 21 0 2 910 677 305 10 5 chr6 42726030 42726228 -106790809 - Lx8 LINE L1 -144 7329 7131 2 910 1129 277 52 19 chr6 42726279 42726813 -106790224 + Lx8 LINE L1 5352 5927 -1546 2 910 288 0 0 0 chr6 42727066 42727098 -106789939 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 910 275 339 91 38 chr6 42727489 42727621 -106789416 - MER20 DNA MER1_type -1 218 80 2 910 405 304 42 134 chr6 42727729 42727854 -106789183 + MT2A LTR ERVL 135 254 -279 2 910 2977 74 39 2 chr6 42727854 42728071 -106788966 - BGLII_Mus LTR ERVK 0 422 191 2 910 405 0 0 0 chr6 42728071 42728116 -106788921 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 910 2977 74 39 2 chr6 42728116 42728305 -106788732 - BGLII_Mus LTR ERVK -232 190 1 2 910 405 304 42 134 chr6 42728305 42728441 -106788596 + MT2A LTR ERVL 255 372 -161 2 910 394 266 51 25 chr6 42728451 42728609 -106788428 - ORR1D2 LTR MaLR -5 365 204 3 910 26 0 0 0 chr6 42728653 42728679 -106788358 + AT_rich Low_complexity Low_complexity 1 26 0 3 910 493 204 14 28 chr6 42728682 42728823 -106788214 - RMER1B Other Other 0 1066 928 3 910 425 269 0 36 chr6 42728833 42728945 -106788092 + polypurine Low_complexity Low_complexity 3 110 0 3 910 986 108 11 17 chr6 42728945 42728976 -106788061 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 3 113 4297 50 0 0 chr6 42728976 42729479 -106787558 - RLTR1C LTR ERV1 0 503 1 3 911 986 108 11 17 chr6 42729479 42729626 -106787411 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 3 911 653 138 0 17 chr6 42729630 42729748 -106787289 + GA-rich Low_complexity Low_complexity 2 117 0 3 911 852 235 173 0 chr6 42729904 42730147 -106786890 - RMER1B Other Other -156 910 626 3 911 405 315 101 14 chr6 42730147 42730366 -106786671 - ORR1D2 LTR MaLR -146 228 1 3 911 287 353 66 14 chr6 42730551 42730838 -106786199 - L1ME1 LINE L1 -81 6098 5797 3 911 427 295 28 16 chr6 42730923 42731261 -106785776 - L1ME1 LINE L1 -852 5294 4955 3 911 968 193 5 15 chr6 42731893 42732088 -106784949 - RMER19C LTR ERVK 0 611 419 3 911 723 233 14 117 chr6 42732067 42732281 -106784756 - RMER19C LTR ERVK -240 662 471 3 911 865 209 113 45 chr6 42732269 42732517 -106784520 + RMER13A LTR ERVK 72 369 -539 3 911 234 0 0 0 chr6 42732517 42732543 -106784494 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 911 263 335 81 86 chr6 42732543 42732951 -106784086 + RMER13A LTR ERVK 370 775 -133 3 911 2312 294 117 30 chr6 42732950 42733814 -106783223 - MTE-int LTR MaLR -285 1295 357 3 911 534 256 71 8 chr6 42733900 42734026 -106783011 - ORR1E LTR MaLR -225 134 1 3 911 225 0 0 0 chr6 42734787 42734812 -106782225 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 911 195 0 27 54 chr6 42738390 42738427 -106778610 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 911 1044 8 0 0 chr6 42738431 42738553 -106778484 - B1_Mm SINE Alu -5 142 21 3 911 278 349 9 9 chr6 42741246 42741356 -106775681 + Tigger5 DNA MER2_type 36 145 -2261 3 911 248 337 11 0 chr6 42741427 42741516 -106775521 + Tigger5 DNA MER2_type 2289 2378 -28 3 911 25 75 0 0 chr6 42741580 42741633 -106775404 + AT_rich Low_complexity Low_complexity 1 53 0 3 911 582 271 111 0 chr6 42742599 42742780 -106774257 + B3 SINE B2 1 201 -15 3 911 2010 155 69 19 chr6 42743555 42743916 -106773121 + ORR1B1 LTR MaLR 9 387 -7 3 911 321 118 0 0 chr6 42743970 42744021 -106773016 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 911 502 209 114 23 chr6 42744093 42744225 -106772812 + MTD LTR MaLR 276 419 0 3 911 270 298 0 12 chr6 42744520 42744605 -106772432 + GA-rich Low_complexity Low_complexity 2 85 0 3 911 1434 28 6 0 chr6 42744607 42744789 -106772248 - L1_Mus1 LINE L1 -144 6423 6241 3 911 346 308 22 30 chr6 42745039 42745173 -106771864 + L1M5 LINE L1 4976 5108 -1038 3 911 333 379 38 28 chr6 42745333 42745621 -106771416 + L1M5 LINE L1 5285 5575 -598 3 911 2979 236 47 106 chr6 42745672 42746761 -106770276 - RMER1B Other Other -1 1065 41 3 911 836 277 13 58 chr6 42747313 42747539 -106769498 - B3 SINE B2 0 216 1 3 911 634 167 13 0 chr6 42747592 42747748 -106769289 + CT-rich Low_complexity Low_complexity 1 158 0 3 911 399 56 0 0 chr6 42747748 42747802 -106769235 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 911 202 385 0 11 chr6 42749499 42749591 -106767446 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 911 240 35 0 0 chr6 42749817 42749846 -106767191 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 911 244 167 28 0 chr6 42749846 42749918 -106767119 + GA-rich Low_complexity Low_complexity 2 75 0 3 911 447 106 0 0 chr6 42751974 42752040 -106764997 + (T)n Simple_repeat Simple_repeat 1 66 0 3 911 24 67 0 0 chr6 42752366 42752411 -106764626 + AT_rich Low_complexity Low_complexity 1 45 0 3 911 458 308 65 47 chr6 42752419 42752698 -106764339 + Lx8 LINE L1 7164 7447 -26 3 911 494 262 87 136 chr6 42753145 42753291 -106763746 - Lx9 LINE L1 -970 6674 6528 3 911 1173 68 0 0 chr6 42753291 42753438 -106763599 - B1_Mus2 SINE Alu 0 147 1 3 911 494 262 87 136 chr6 42753438 42753556 -106763481 - Lx9 LINE L1 -1117 6527 6423 3 911 263 319 70 28 chr6 42753561 42753845 -106763192 + Lx9 LINE L1 7307 7602 -42 3 911 922 255 25 10 chr6 42753923 42754121 -106762916 - B3 SINE B2 -10 206 6 3 911 384 297 126 15 chr6 42754327 42754590 -106762447 + L1M5 LINE L1 4317 4608 -1538 3 911 276 30 0 0 chr6 42754599 42754632 -106762405 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 911 1149 46 0 0 chr6 42754632 42754783 -106762254 + (GA)n Simple_repeat Simple_repeat 1 152 0 3 911 230 373 81 45 chr6 42754844 42755066 -106761971 - B4A SINE B4 -62 230 1 3 911 3679 215 97 21 chr6 42755114 42756054 -106760983 - Lx5 LINE L1 0 7050 6005 3 911 1089 174 65 4 chr6 42756322 42756553 -106760484 - Lx2 LINE L1 -13 6984 6740 3 911 1070 297 66 25 chr6 42756583 42757025 -106760012 - RMER5 LTR ERV1 -3 531 72 3 911 2276 330 68 28 chr6 42757072 42758340 -106758697 - Lx8 LINE L1 -29 7444 6127 3 911 6163 44 2 2 chr6 42758844 42759688 -106757349 - L1Md_F2 LINE L1 0 6582 5756 3 911 882 313 43 12 chr6 42760100 42760643 -106756394 - L1Md_F2 LINE L1 -500 5800 5217 3 911 215 61 0 29 chr6 42760643 42760677 -106756360 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 911 478 347 61 24 chr6 42760677 42760789 -106756248 - L1Md_F2 LINE L1 -664 5216 5104 3 911 651 331 73 35 chr6 42762606 42762866 -106754171 + B4 SINE B4 20 289 -3 3 911 370 219 14 0 chr6 42763235 42763308 -106753729 - B3A SINE B2 -124 74 1 3 911 1193 55 6 24 chr6 42763556 42763723 -106753314 + B2_Mm2 SINE B2 24 187 -8 3 911 22 0 0 0 chr6 42763772 42763794 -106753243 + AT_rich Low_complexity Low_complexity 1 22 0 3 911 760 333 74 10 chr6 42764525 42764931 -106752106 - Lx8 LINE L1 -380 7093 6662 3 911 540 0 0 0 chr6 42764938 42764998 -106752039 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 911 338 275 83 83 chr6 42766173 42766403 -106750634 - L1M2 LINE L1 -756 5387 5158 3 911 380 314 14 21 chr6 42766472 42766612 -106750425 - B1F SINE Alu -8 141 3 3 911 277 386 46 31 chr6 42768677 42768872 -106748165 + MIRb SINE MIR 20 217 -51 3 911 1873 168 138 13 chr6 42769191 42769653 -106747384 - RLTR25A LTR ERVK 0 1103 479 3 911 792 168 14 7 chr6 42769659 42769803 -106747234 + RLTR25B LTR ERVK 63 207 -821 3 911 350 333 45 8 chr6 42769805 42769938 -106747099 + RSINE1 SINE B4 28 165 0 3 911 623 97 3 1 chr6 42770417 42770513 -106746524 + BGLII_Mus LTR ERVK 243 422 0 3 911 756 266 52 16 chr6 42770685 42770709 -106746328 - B3 SINE B2 -4 212 188 3 911 432 0 0 0 chr6 42770709 42770757 -106746280 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 911 246 32 0 0 chr6 42770757 42770787 -106746250 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 911 756 266 52 16 chr6 42770787 42770952 -106746085 - B3 SINE B2 -29 187 16 3 911 21 0 0 0 chr6 42771150 42771171 -106745866 + AT_rich Low_complexity Low_complexity 1 21 0 3 911 973 288 148 22 chr6 42772733 42773695 -106743342 + L1MA4 LINE L1 4375 5454 -426 3 911 2517 157 66 4 chr6 42773741 42774366 -106742671 - Lx5 LINE L1 -939 6111 5442 3 911 3470 251 29 13 chr6 42774370 42775229 -106741808 + Lx5 LINE L1 6175 7047 -3 3 911 37 23 0 0 chr6 42775229 42775273 -106741764 + AT_rich Low_complexity Low_complexity 1 44 0 3 911 544 241 41 18 chr6 42775287 42775456 -106741581 + Lx6 LINE L1 7288 7460 0 3 911 232 319 9 9 chr6 42775458 42775572 -106741465 + L1MA4 LINE L1 5476 5589 -711 3 911 234 233 0 0 chr6 42775579 42775639 -106741398 + CT-rich Low_complexity Low_complexity 2 61 0 3 911 560 206 111 0 chr6 42775643 42775769 -106741268 - B1_Mur2 SINE Alu -8 141 2 3 911 367 249 170 45 chr6 42775865 42776088 -106740949 + L1MA4 LINE L1 5637 5915 -385 3 911 274 339 190 17 chr6 42777621 42777795 -106739242 + RMER15 LTR ERVL 276 479 -96 3 911 3707 16 0 0 chr6 42777813 42778259 -106738778 + L1Md_T LINE L1 5141 5586 -297 3 911 8474 33 0 0 chr6 42778259 42779255 -106737782 + L1Md_T LINE L1 5587 6582 0 3 911 4182 73 12 2 chr6 42779399 42779960 -106737077 - L1_Mus2 LINE L1 -2 6564 5998 3 911 244 343 75 19 chr6 42780630 42780737 -106736300 + ORR1E LTR MaLR 19 131 -228 3 911 281 251 74 74 chr6 42781494 42781610 -106735427 - RMER17A LTR ERVK -246 505 381 3 911 1257 61 0 0 chr6 42781610 42781790 -106735247 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 911 281 251 74 74 chr6 42781790 42781875 -106735162 - RMER17A LTR ERVK -371 380 304 3 911 247 233 67 0 chr6 42782438 42782498 -106734539 - ID4_ SINE ID -18 65 2 3 911 366 303 0 0 chr6 42782784 42782873 -106734164 + U6 snRNA snRNA 9 97 -10 3 911 265 373 8 0 chr6 42782907 42783041 -106733996 + L1M4 LINE L1 620 754 -5788 3 911 334 284 122 41 chr6 42783158 42783305 -106733732 + L1MDa LINE L1 141 299 -6334 3 911 236 225 14 21 chr6 42786354 42786443 -106730594 + T-rich Low_complexity Low_complexity 1 88 0 3 911 230 204 20 0 chr6 42787149 42787198 -106729839 + L3b LINE CR1 180 229 -253 3 911 842 178 147 5 chr6 42787537 42787735 -106729302 - URR1A DNA MER1_type 0 226 1 3 911 252 0 0 0 chr6 42789923 42789951 -106727086 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 3 911 204 97 0 0 chr6 42790185 42790216 -106726821 + (GGAAA)n Simple_repeat Simple_repeat 5 35 0 3 911 1287 84 0 0 chr6 42790222 42790400 -106726637 + (GGGAA)n Simple_repeat Simple_repeat 3 180 0 3 911 603 0 0 0 chr6 42790400 42790467 -106726570 + (GGAAA)n Simple_repeat Simple_repeat 1 67 0 3 911 4969 246 39 55 chr6 42792287 42793826 -106723211 - Lx7 LINE L1 0 7696 6183 3 911 7895 196 50 17 chr6 42793825 42794268 -106722769 - Lx7 LINE L1 -1640 6056 5601 3 911 4396 18 0 0 chr6 42794268 42794761 -106722276 - MT2_Mm LTR ERVL 0 493 1 3 911 7895 182 48 15 chr6 42794761 42795875 -106721162 - Lx7 LINE L1 -280 5600 4455 3 911 4470 45 4 11 chr6 42795875 42796436 -106720601 - L1Md_F2 LINE L1 -12 6570 6014 3 911 7895 182 48 15 chr6 42796436 42796867 -106720170 - Lx7 LINE L1 -1426 4454 4000 3 911 2466 237 51 23 chr6 42796871 42797613 -106719424 - Lx7 LINE L1 -6994 734 17 3 911 1013 280 89 82 chr6 42797616 42797937 -106719100 - MT2A LTR ERVL -7 548 212 3 911 351 0 0 0 chr6 42797937 42797976 -106719061 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 911 1013 277 82 71 chr6 42797976 42798201 -106718836 - MT2A LTR ERVL -322 211 1 3 911 385 55 18 0 chr6 42798201 42798256 -106718781 - MERVL_2A-int LTR ERVL 0 5761 5706 3 911 243 294 63 56 chr6 42798256 42798382 -106718655 - ORR1A3-int LTR MaLR -1324 639 513 3 911 1553 164 164 10 chr6 42798382 42798980 -106718057 - MERVL_2A-int LTR ERVL -182 5579 4890 3 911 799 190 112 12 chr6 42798980 42799150 -106717887 - RLTR25A LTR ERVK 0 1103 917 3 911 264 405 48 0 chr6 42799802 42799928 -106717109 - LTR33A_ LTR ERVL -330 201 70 3 911 2124 121 9 58 chr6 42799935 42800278 -106716759 + ORR1A3 LTR MaLR 1 326 0 4 911 1265 223 76 51 chr6 42800341 42800657 -106716380 - RLTR18B LTR ERVK 0 512 189 4 911 272 200 36 0 chr6 42800865 42800920 -106716117 + RLTR18B LTR ERVK 78 134 -378 4 911 831 258 66 60 chr6 42801195 42801507 -106715530 - ORR1D2 LTR MaLR 0 394 74 4 911 1346 108 10 0 chr6 42801484 42801688 -106715349 - RMER6C LTR ERVK -53 637 432 4 911 307 0 0 44 chr6 42801706 42801751 -106715286 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 911 302 241 23 46 chr6 42801757 42801844 -106715193 - PB1D9 SINE Alu -33 87 3 4 911 672 113 0 124 chr6 42801844 42801938 -106715099 - MT2B LTR ERVL -342 259 181 4 911 335 42 1323 0 chr6 42801925 42801987 -106715050 - RMER6D LTR ERVK -681 39 1 4 911 386 244 12 0 chr6 42801988 42802070 -106714967 - ORR1D2 LTR MaLR -279 91 9 4 911 728 347 10 14 chr6 42802201 42802490 -106714547 - B4A SINE B4 -2 290 3 4 911 407 256 58 147 chr6 42802854 42803010 -106714027 - B3A SINE B2 -6 192 45 4 911 3896 67 15 35 chr6 42803027 42803570 -106713467 - L1Md_F2 LINE L1 -3 6579 6048 4 911 34023 46 0 3 chr6 42803648 42809063 -106707974 + L1Md_T LINE L1 95 5589 -297 4 911 8519 28 0 0 chr6 42809063 42810106 -106706931 + L1Md_T LINE L1 5590 6585 0 4 911 21 0 0 0 chr6 42810226 42810247 -106706790 + AT_rich Low_complexity Low_complexity 1 21 0 4 911 195 42 0 0 chr6 42810762 42810786 -106706251 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 911 1097 78 7 0 chr6 42811102 42811243 -106705794 + B1_Mus1 SINE Alu 1 142 -6 4 911 216 0 0 0 chr6 42811244 42811268 -106705769 + (CAA)n Simple_repeat Simple_repeat 1 24 0 4 911 452 278 48 37 chr6 42811276 42811463 -106705574 + Kanga2_a DNA Tc2 409 597 -291 4 911 340 391 43 0 chr6 42811540 42811678 -106705359 - B1F1 SINE Alu -5 144 1 4 911 318 274 16 21 chr6 42813509 42813683 -106703354 + L1MA4 LINE L1 5588 5776 -521 4 911 432 181 0 0 chr6 42813683 42813766 -106703271 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 911 335 316 40 27 chr6 42813796 42814020 -106703017 + L1MA4 LINE L1 5795 6021 -279 4 911 270 254 113 0 chr6 42814439 42814510 -106702527 - ID4_ SINE ID -2 81 3 4 911 240 35 0 0 chr6 42815137 42815166 -106701871 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 4 911 306 352 86 0 chr6 42815526 42815654 -106701383 - MER82 DNA MER2_type -505 148 10 4 911 378 353 194 11 chr6 42815976 42816326 -106700711 + L1MEc LINE L1 199 612 -5788 4 911 2716 141 13 9 chr6 42816551 42817010 -106700027 - Lx2 LINE L1 0 6997 6537 4 911 609 340 25 22 chr6 42817155 42817429 -106699608 + B4A SINE B4 2 276 -16 4 911 353 322 41 0 chr6 42817855 42818026 -106699011 - L1MD LINE L1 -1920 4226 4049 4 911 22 70 0 0 chr6 42818092 42818135 -106698902 + AT_rich Low_complexity Low_complexity 1 43 0 4 911 446 268 94 49 chr6 42818516 42818802 -106698235 - L1MC4 LINE L1 -418 7624 7326 4 911 715 295 12 6 chr6 42821219 42821386 -106695651 + B3A SINE B2 1 168 -30 4 911 474 65 0 0 chr6 42821392 42821454 -106695583 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 911 23 68 0 0 chr6 42821454 42821498 -106695539 + AT_rich Low_complexity Low_complexity 1 44 0 4 911 302 294 120 72 chr6 42821544 42821753 -106695284 - ORR1E LTR MaLR -97 262 44 4 911 310 302 41 12 chr6 42821893 42822064 -106694973 - L1M LINE L1 -733 5429 5254 4 911 529 309 7 7 chr6 42822301 42822441 -106694596 - RSINE1 SINE B4 -23 142 3 4 911 354 320 189 15 chr6 42822588 42822794 -106694243 + L1MC4 LINE L1 6730 6971 -1071 4 911 440 291 17 8 chr6 42822797 42822915 -106694122 + ID_B1 SINE B4 103 221 -3 4 911 234 254 89 16 chr6 42823008 42823132 -106693905 + L1MC4 LINE L1 7048 7180 -862 4 911 320 242 214 32 chr6 42823421 42823575 -106693462 + L1MC4 LINE L1 7487 7668 -214 4 911 857 258 29 5 chr6 42824302 42824512 -106692525 + B3 SINE B2 1 215 -1 4 911 27 0 0 0 chr6 42824513 42824540 -106692497 + AT_rich Low_complexity Low_complexity 1 27 0 4 911 194 245 94 0 chr6 42824626 42824679 -106692358 - L2c LINE L2 -2 3385 3328 4 911 661 308 9 55 chr6 42824925 42825145 -106691892 + B3 SINE B2 7 216 0 4 911 1218 48 0 0 chr6 42825412 42825559 -106691478 + B1_Mus2 SINE Alu 1 147 0 4 911 255 125 0 0 chr6 42825559 42825599 -106691438 + (A)n Simple_repeat Simple_repeat 1 40 0 4 911 477 76 0 0 chr6 42827388 42827454 -106689583 + (GAGAA)n Simple_repeat Simple_repeat 2 67 0 4 911 417 214 60 22 chr6 42828323 42828457 -106688580 - Lx9 LINE L1 -7 7637 7499 4 911 3303 212 24 5 chr6 42828541 42829285 -106687752 - Lx9 LINE L1 -161 7483 6726 4 911 4298 70 0 9 chr6 42829351 42829910 -106687127 + L1Md_T LINE L1 6026 6579 -3 4 911 28 0 0 0 chr6 42829910 42829938 -106687099 + AT_rich Low_complexity Low_complexity 1 28 0 4 911 219 217 0 0 chr6 42830460 42830520 -106686517 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 911 429 278 28 0 chr6 42830585 42830693 -106686344 + PB1D7 SINE Alu 5 115 -5 4 911 4243 165 37 4 chr6 42831152 42831902 -106685135 + RLTR25B LTR ERVK 1 775 -253 4 911 646 174 30 15 chr6 42831889 42832023 -106685014 + RLTR25B LTR ERVK 893 1028 0 4 911 26 30 0 0 chr6 42832634 42832667 -106684370 + AT_rich Low_complexity Low_complexity 1 33 0 4 911 5707 96 9 6 chr6 42832917 42834388 -106682649 + L1VL4 LINE L1 181 1660 -1899 4 911 497 111 12 0 chr6 42834383 42834464 -106682573 - L1VL4 LINE L1 -945 4938 4857 4 911 431 110 14 0 chr6 42834459 42834532 -106682505 - L1Md_F2 LINE L1 -74 6508 6435 4 911 277 35 0 27 chr6 42834520 42834578 -106682459 + L1_Mus2 LINE L1 6527 6582 0 4 911 19431 161 22 5 chr6 42834579 42836601 -106680436 - L1VL4 LINE L1 -1007 4876 2792 4 911 222 37 0 0 chr6 42836601 42836628 -106680409 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 911 19431 176 19 11 chr6 42836628 42838885 -106678152 - L1VL4 LINE L1 -3092 2791 546 4 911 459 51 0 12 chr6 42838883 42838963 -106678074 + MusHAL1 LINE L1 2628 2706 -6 4 911 279 190 0 0 chr6 42839614 42839672 -106677365 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 911 1155 40 0 0 chr6 42840567 42840716 -106676321 + (TTC)n Simple_repeat Simple_repeat 3 151 0 4 911 1630 183 3 7 chr6 42840721 42841007 -106676030 - Lx4A LINE L1 -1 7057 6773 4 911 332 167 0 0 chr6 42841421 42841487 -106675550 - Lx6 LINE L1 -13 7447 7382 4 911 6406 143 61 21 chr6 42841488 42843103 -106673934 - L1_Mus3 LINE L1 -574 6064 4367 4 911 6994 67 1 3 chr6 42843103 42844015 -106673022 + L1Md_F2 LINE L1 5672 6581 -1 4 911 7243 126 37 21 chr6 42844018 42845958 -106671079 - L1VL1 LINE L1 -1531 2167 193 4 911 443 18 0 18 chr6 42849051 42849093 -106667944 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 911 924 143 0 0 chr6 42849093 42849247 -106667790 + (TA)n Simple_repeat Simple_repeat 2 155 0 4 911 443 18 0 18 chr6 42849247 42849261 -106667776 + (CA)n Simple_repeat Simple_repeat 2 15 0 4 911 855 149 13 20 chr6 42850108 42850259 -106666778 - RLTR11B LTR ERVK 0 453 304 4 911 295 244 133 59 chr6 42850596 42850731 -106666306 + RLTR23 LTR ERV1 286 430 0 4 911 1643 168 14 50 chr6 42850731 42851048 -106665989 - RLTR11B LTR ERVK -149 304 1 4 911 1050 128 20 65 chr6 42851253 42851289 -106665748 - B2_Mm2 SINE B2 -2 193 157 4 911 327 25 0 0 chr6 42851289 42851329 -106665708 + (TTA)n Simple_repeat Simple_repeat 2 41 0 4 911 947 98 68 0 chr6 42851332 42851464 -106665573 - B1_Mus1 SINE Alu -7 141 1 4 911 1050 128 20 65 chr6 42851464 42851475 -106665562 - B2_Mm2 SINE B2 -39 156 150 4 911 4898 111 39 15 chr6 42851475 42852217 -106664820 - Lx3A LINE L1 -6 6975 6216 4 911 1050 128 20 65 chr6 42852217 42852365 -106664672 - B2_Mm2 SINE B2 -46 149 2 4 911 30 0 0 0 chr6 42852778 42852808 -106664229 + AT_rich Low_complexity Low_complexity 1 30 0 4 911 387 272 314 4 chr6 42853270 42853527 -106663510 - Lx8 LINE L1 -587 7109 6767 4 911 283 271 0 14 chr6 42853564 42853635 -106663402 + Lx8 LINE L1 7216 7285 -188 4 911 587 168 0 8 chr6 42853635 42853755 -106663282 + CT-rich Low_complexity Low_complexity 2 120 0 4 911 849 254 96 91 chr6 42853755 42854050 -106662987 - RLTR12B LTR ERVK -230 298 17 4 911 1246 34 0 0 chr6 42854465 42854612 -106662425 - B1_Mm SINE Alu 0 147 1 4 911 2882 91 15 0 chr6 42855535 42855929 -106661108 + MTB LTR MaLR 1 400 0 4 911 697 377 28 7 chr6 42856141 42856424 -106660613 + B4A SINE B4 4 292 0 4 911 921 260 48 40 chr6 42856447 42856844 -106660193 - L1_Mur3 LINE L1 -2121 3759 3360 4 911 298 253 114 11 chr6 42857136 42857224 -106659813 + B4A SINE B4 181 277 -15 4 911 381 93 0 0 chr6 42857317 42857371 -106659666 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 911 35 54 0 0 chr6 42857510 42857566 -106659471 + AT_rich Low_complexity Low_complexity 1 56 0 4 911 47 73 0 0 chr6 42857719 42857815 -106659222 + AT_rich Low_complexity Low_complexity 1 96 0 4 911 486 0 0 0 chr6 42859694 42859748 -106657289 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 911 204 304 138 9 chr6 42859760 42859871 -106657166 + L2b LINE L2 3263 3374 -13 4 912 264 280 21 21 chr6 42862676 42862771 -106654266 + Lx8 LINE L1 6521 6615 -858 4 912 317 345 99 32 chr6 42863101 42863385 -106653652 - L1ME3 LINE L1 -191 5971 5669 4 912 324 0 0 0 chr6 42863385 42863421 -106653616 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 912 2073 166 36 46 chr6 42863776 42864193 -106652844 + MTC LTR MaLR 1 413 -8 4 912 229 323 15 0 chr6 42864260 42864325 -106652712 - ID4_ SINE ID -14 69 4 4 912 5149 210 12 24 chr6 42864926 42865969 -106651068 + Lx5 LINE L1 5926 6956 -94 4 912 2172 116 39 19 chr6 42865969 42866330 -106650707 + Lx2 LINE L1 6630 6997 0 4 912 24 0 0 0 chr6 42866585 42866609 -106650428 + AT_rich Low_complexity Low_complexity 1 24 0 4 912 10232 49 0 0 chr6 42867546 42869528 -106647509 - L1Md_F3 LINE L1 -14 6570 4588 4 912 293 170 15 145 chr6 42869778 42869909 -106647128 - Lx9 LINE L1 -15 7629 7516 4 912 432 0 0 0 chr6 42869914 42869962 -106647075 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 912 238 322 68 19 chr6 42869995 42870201 -106646836 + L1M4 LINE L1 4645 4860 -1286 5 912 572 283 136 46 chr6 42870204 42870491 -106646546 + MLT2B1 LTR ERVL 1 285 -129 5 912 799 77 35 23 chr6 42870546 42870720 -106646317 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 5 912 530 263 51 0 chr6 42870829 42870947 -106646090 - RSINE1 SINE B4 -40 125 2 5 912 30 97 0 0 chr6 42872462 42872555 -106644482 + AT_rich Low_complexity Low_complexity 1 93 0 5 912 12705 98 26 40 chr6 42873116 42876092 -106640945 - L1VL2 LINE L1 -632 2983 67 5 912 21 0 0 0 chr6 42876138 42876159 -106640878 + AT_rich Low_complexity Low_complexity 1 21 0 5 912 23 54 0 0 chr6 42876921 42876958 -106640079 + AT_rich Low_complexity Low_complexity 1 37 0 5 912 635 208 15 60 chr6 42878184 42878317 -106638720 + B1_Mus1 SINE Alu 2 128 -20 5 912 342 307 63 33 chr6 42878396 42878657 -106638380 - RLTR13D3 LTR ERVK 0 1114 752 5 912 23 54 0 0 chr6 42878894 42878931 -106638106 + AT_rich Low_complexity Low_complexity 1 37 0 5 912 736 289 90 14 chr6 42879534 42879811 -106637226 + Lx8 LINE L1 6361 6658 -815 5 912 431 50 49 29 chr6 42879866 42879968 -106637069 + (TTTTTG)n Simple_repeat Simple_repeat 1 104 0 5 912 971 329 85 21 chr6 42880008 42880583 -106636454 + Lx8 LINE L1 6703 7314 -159 5 912 246 365 58 86 chr6 42880800 42881043 -106635994 - MLT1L LTR MaLR -335 275 40 5 912 221 278 79 143 chr6 42881187 42881313 -106635724 + B4A SINE B4 1 118 -174 5 912 489 343 14 7 chr6 42881219 42881363 -106635674 + B3A SINE B2 16 160 -38 5 912 328 276 91 10 chr6 42881418 42881517 -106635520 + PB1D7 SINE Alu 5 111 -9 5 912 238 200 94 118 chr6 42882050 42882135 -106634902 + MTEb LTR MaLR 1 83 -296 5 912 319 243 14 0 chr6 42883012 42883082 -106633955 - B1_Mus2 SINE Alu -6 141 71 5 912 645 14 0 0 chr6 42883131 42883205 -106633832 + (TTTTC)n Simple_repeat Simple_repeat 1 74 0 5 912 1136 109 0 6 chr6 42883205 42883380 -106633657 + (TCTCC)n Simple_repeat Simple_repeat 2 176 0 5 912 3247 55 0 7 chr6 42883403 42883817 -106633220 - L1Md_F2 LINE L1 -2 6580 6169 5 912 540 45 0 0 chr6 42883817 42883884 -106633153 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 5 912 587 146 24 29 chr6 42883899 42884069 -106632968 + CT-rich Low_complexity Low_complexity 4 172 0 5 912 185 61 0 83 chr6 42885047 42885083 -106631954 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 5 912 4479 136 33 18 chr6 42885159 42886141 -106630896 - L1VL4 LINE L1 -1852 1707 706 5 912 4318 38 2 6 chr6 42886720 42887253 -106629784 + L1Md_F2 LINE L1 5056 5586 -297 5 912 8058 42 8 0 chr6 42887253 42888229 -106628808 + L1Md_F2 LINE L1 5587 6570 -12 5 912 2034 251 109 26 chr6 42888245 42888986 -106628051 + RCHARR1 DNA MER1_type 169 971 -3 5 912 249 294 15 0 chr6 42889074 42889142 -106627895 - MER58A DNA MER1_type -105 119 51 5 912 467 377 38 46 chr6 42889489 42889881 -106627156 - Lx8 LINE L1 -115 7358 6970 5 912 26060 140 25 5 chr6 42889937 42896007 -106621030 - L1_Mus3 LINE L1 0 6638 408 5 912 469 332 19 37 chr6 42896084 42896300 -106620737 - Lx8 LINE L1 -699 6774 6563 5 912 240 209 0 0 chr6 42896568 42896611 -106620426 + B1_Mur1 SINE Alu 101 143 -6 5 912 4294 60 7 36 chr6 42896682 42897265 -106619772 + L1_Mus1 LINE L1 5990 6555 -12 5 912 680 320 57 0 chr6 42897349 42897543 -106619494 - B3 SINE B2 0 216 12 5 912 1536 206 39 49 chr6 42897904 42897933 -106619104 + ORR1C2 LTR MaLR 1 27 -357 5 912 1261 106 6 11 chr6 42897933 42898114 -106618923 + B2_Mm2 SINE B2 2 181 -14 5 912 1536 206 39 49 chr6 42898114 42898471 -106618566 + ORR1C2 LTR MaLR 28 383 -1 5 912 312 70 0 0 chr6 42899251 42899294 -106617743 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 5 912 486 0 0 0 chr6 42900126 42900180 -106616857 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 912 21 0 0 0 chr6 42900489 42900510 -106616527 + AT_rich Low_complexity Low_complexity 1 21 0 5 912 24 53 0 0 chr6 42900653 42900691 -106616346 + AT_rich Low_complexity Low_complexity 1 38 0 5 912 229 165 52 0 chr6 42901310 42901407 -106615630 + (TG)n Simple_repeat Simple_repeat 2 103 0 5 912 726 164 82 0 chr6 42901706 42901828 -106615209 - B1_Mur2 SINE Alu -13 136 5 5 912 1066 133 78 0 chr6 42902245 42902425 -106614612 + Lx LINE L1 6454 6647 -7 5 912 212 184 0 0 chr6 42902429 42902467 -106614570 + A-rich Low_complexity Low_complexity 1 38 0 5 912 21 0 0 0 chr6 42902482 42902503 -106614534 + AT_rich Low_complexity Low_complexity 1 21 0 5 912 26 64 0 0 chr6 42902534 42902581 -106614456 + AT_rich Low_complexity Low_complexity 1 47 0 5 912 3360 172 9 21 chr6 42902594 42902688 -106614349 + Lx LINE L1 5224 5313 -570 5 912 1042 109 0 7 chr6 42902688 42902836 -106614201 + B1_Mm SINE Alu 1 147 0 5 912 6454 125 28 11 chr6 42902836 42904158 -106612879 + Lx LINE L1 5314 6654 0 5 912 243 88 0 0 chr6 42905059 42905093 -106611944 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 5 912 434 348 25 0 chr6 42905132 42905290 -106611747 - RSINE1 SINE B4 0 165 4 5 912 2224 221 35 8 chr6 42906723 42907239 -106609798 - Lx5 LINE L1 -2 7048 6519 5 912 257 193 91 0 chr6 42907244 42907332 -106609705 - L1M2 LINE L1 -3303 2840 2745 5 912 32 26 0 0 chr6 42907435 42907474 -106609563 + AT_rich Low_complexity Low_complexity 1 39 0 5 912 29 60 0 0 chr6 42907585 42907635 -106609402 + AT_rich Low_complexity Low_complexity 1 50 0 5 912 291 311 0 0 chr6 42908337 42908427 -106608610 + PB1D10 SINE Alu 26 115 -2 5 912 5114 105 33 4 chr6 42908571 42909718 -106607319 - L1VL2 LINE L1 -1789 1826 641 5 912 30206 49 2 5 chr6 42909716 42914438 -106602599 - L1Md_F2 LINE L1 0 6582 1873 5 912 2056 43 4 8 chr6 42914438 42914695 -106602342 + L1Md_F2 LINE L1 6320 6575 -7 5 912 701 291 24 5 chr6 42917227 42917438 -106599599 + B3 SINE B2 2 216 0 5 912 31 26 0 0 chr6 42918361 42918399 -106598638 + AT_rich Low_complexity Low_complexity 1 38 0 5 912 1086 296 111 21 chr6 42918418 42919395 -106597642 - Lx6 LINE L1 -27 7433 6151 5 912 3181 235 10 15 chr6 42919403 42920288 -106596749 - Lx6 LINE L1 -63 5817 4937 5 912 378 108 0 0 chr6 42920289 42920354 -106596683 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 912 279 0 0 0 chr6 42920354 42920384 -106596653 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 912 218 109 65 0 chr6 42921113 42921159 -106595878 + T-rich Low_complexity Low_complexity 2 50 0 5 912 3901 67 4 6 chr6 42921172 42921681 -106595356 - L1Md_F2 LINE L1 -11 6571 6064 5 912 883 249 45 104 chr6 42921794 42921986 -106595051 - MTD LTR MaLR -24 395 206 5 912 3488 82 2 37 chr6 42921986 42922478 -106594559 - L1_Mus2 LINE L1 0 6566 6092 5 912 883 249 45 104 chr6 42922478 42922621 -106594416 - MTD LTR MaLR -214 205 80 5 912 316 300 62 70 chr6 42922597 42922726 -106594311 + RSINE1 SINE B4 38 165 0 5 912 599 140 28 0 chr6 42922846 42922953 -106594084 - Lx4B LINE L1 -554 6504 6395 5 912 1390 89 5 0 chr6 42923299 42923512 -106593525 - L1_Mur1 LINE L1 -1905 3981 3768 5 912 2952 54 2 65 chr6 42923515 42923929 -106593108 + RLTR10 LTR ERVK 1 388 -2 5 912 4082 60 147 129 chr6 42923931 42924786 -106592251 + RLTR10-int LTR ERVK 1 871 -1116 5 912 586 305 78 10 chr6 42924775 42925083 -106591954 + RLTR10-int LTR ERVK 822 1150 -5392 5 912 7957 39 4 2 chr6 42925165 42926160 -106590877 + RLTR10-int LTR ERVK 990 1986 -1 5 912 3029 31 2 104 chr6 42926160 42926592 -106590445 + RLTR10 LTR ERVK 1 388 -2 5 912 6399 91 84 0 chr6 42926594 42927644 -106589393 - L1_Mur1 LINE L1 -2116 3770 2633 5 912 1254 141 0 42 chr6 42927645 42927905 -106589132 + Lx3_Mus LINE L1 5887 6135 -874 5 912 3292 41 2 2 chr6 42929967 42930362 -106586675 - MTA_Mm LTR MaLR 0 396 2 5 912 452 314 48 29 chr6 42931603 42931813 -106585224 + B3 SINE B2 2 215 -1 5 912 480 241 14 1 chr6 42933134 42933292 -106583745 + Lx5 LINE L1 5640 5843 -1207 5 912 507 157 0 0 chr6 42933289 42933404 -106583633 - L1_Mm LINE L1 -3757 2126 2012 5 912 1543 223 46 3 chr6 42933461 42933852 -106583185 + L1Md_F LINE L1 578 985 -5534 5 912 480 273 206 4 chr6 42934111 42934354 -106582683 - ORR1D1 LTR MaLR -5 369 78 5 912 1965 60 218 0 chr6 42934382 42934666 -106582371 + ORR1A1 LTR MaLR 1 346 0 5 912 3466 72 27 58 chr6 42934666 42935223 -106581814 + ORR1A1-int LTR MaLR 1 540 -1252 5 912 2750 28 0 0 chr6 42935223 42935549 -106581488 - IAPEY2_LTR LTR ERVK 0 357 32 5 912 2693 122 15 31 chr6 42935559 42936215 -106580822 - IAPEY3-int LTR ERVK 0 7581 6984 5 912 203 368 44 0 chr6 42936215 42936329 -106580708 - L3b LINE CR1 -29 453 335 5 912 3390 65 9 0 chr6 42936344 42936792 -106580245 - IAPEY3-int LTR ERVK -4991 2689 2238 5 912 8773 125 11 37 chr6 42936769 42938266 -106578771 - IAPEY3-int LTR ERVK -5698 1982 524 5 912 708 146 51 38 chr6 42938265 42938422 -106578615 - IAPLTR4_I LTR ERVK -1290 180 22 5 912 2720 62 0 3 chr6 42938422 42938775 -106578262 - IAPEY2_LTR LTR ERVK 0 357 6 5 912 8821 78 18 1 chr6 42938757 42939995 -106577042 + ORR1A1-int LTR MaLR 534 1792 0 5 912 2721 70 3 0 chr6 42939995 42940340 -106576697 + ORR1A1 LTR MaLR 1 346 0 5 912 3328 241 42 32 chr6 42940657 42941324 -106575713 - Lx4B LINE L1 -2 7056 6377 5 912 812 104 0 8 chr6 42941324 42941450 -106575587 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 5 912 3328 241 42 32 chr6 42941450 42941736 -106575301 - Lx4B LINE L1 -682 6376 6094 5 912 246 196 0 0 chr6 42941737 42941783 -106575254 - RMER19C LTR ERVK -565 46 1 5 912 1813 176 8 5 chr6 42941794 42942170 -106574867 - L1_Mur2 LINE L1 -432 5445 5069 5 912 3634 172 28 15 chr6 42942367 42943148 -106573889 - L1_Mur2 LINE L1 -1296 4581 3791 5 912 844 267 5 15 chr6 42943148 42943353 -106573684 - MTD LTR MaLR -205 214 12 5 912 465 115 0 0 chr6 42944972 42945050 -106571987 + (TC)n Simple_repeat Simple_repeat 1 78 0 5 912 454 179 0 11 chr6 42945165 42945340 -106571697 + CT-rich Low_complexity Low_complexity 2 174 0 5 912 266 170 0 0 chr6 42945345 42945392 -106571645 - B1_Mus2 SINE Alu -12 135 89 5 912 4610 145 30 0 chr6 42945845 42946618 -106570419 + L1VL4 LINE L1 194 989 -5313 5 912 5677 167 20 31 chr6 42946613 42947726 -106569311 + L1_Mur2 LINE L1 3582 4681 -1196 5 912 3178 173 49 20 chr6 42947720 42948711 -106568326 + L1Md_F LINE L1 237 1279 -2538 5 912 2007 224 116 20 chr6 42952780 42953366 -106563671 - RLTR26 LTR ERVK 0 642 1 5 912 22517 74 11 9 chr6 42953370 42956262 -106560775 - MERVK26-int LTR ERVK -1 6918 4021 5 912 1211 113 0 0 chr6 42956252 42956411 -106560626 - MERVK26-int LTR ERVK -3142 3777 3619 5 912 6160 109 63 22 chr6 42956482 42957434 -106559603 - MERVK26-int LTR ERVK -5928 991 1 5 912 2053 212 88 27 chr6 42957434 42958015 -106559022 - RLTR26 LTR ERVK 0 642 1 5 912 236 316 0 0 chr6 42958620 42958677 -106558360 + polypyrimidine Low_complexity Low_complexity 4 60 0 5 912 945 0 0 0 chr6 42958746 42958851 -106558186 + (TTTCC)n Simple_repeat Simple_repeat 1 105 0 5 912 431 209 7 79 chr6 42958851 42959404 -106557633 + C-rich Low_complexity Low_complexity 1 513 0 6 912 220 245 10 21 chr6 42959437 42959533 -106557504 + G-rich Low_complexity Low_complexity 2 96 0 6 912 225 290 0 46 chr6 42959572 42959637 -106557400 + G-rich Low_complexity Low_complexity 6 67 0 6 912 208 361 0 0 chr6 42959641 42959702 -106557335 + C-rich Low_complexity Low_complexity 1 61 0 6 912 310 308 16 40 chr6 42959734 42959859 -106557178 + G-rich Low_complexity Low_complexity 1 122 0 6 912 200 111 0 27 chr6 42959871 42959908 -106557129 + (AGGGGG)n Simple_repeat Simple_repeat 2 37 0 6 912 199 169 16 48 chr6 42959961 42960023 -106557014 + G-rich Low_complexity Low_complexity 2 61 0 6 912 386 392 23 12 chr6 42960030 42960203 -106556834 + C-rich Low_complexity Low_complexity 1 175 0 6 912 210 205 0 78 chr6 42960411 42960501 -106556536 + C-rich Low_complexity Low_complexity 3 85 0 6 912 219 305 0 33 chr6 42960610 42960671 -106556366 + G-rich Low_complexity Low_complexity 6 64 0 6 912 411 311 22 22 chr6 42960675 42960810 -106556227 + C-rich Low_complexity Low_complexity 5 139 0 6 912 392 315 15 30 chr6 42960843 42960974 -106556063 + G-rich Low_complexity Low_complexity 5 133 0 6 912 1135 69 109 0 chr6 42961001 42961175 -106555862 + MTA_Mm LTR MaLR 204 396 0 6 912 8411 59 27 2 chr6 42961175 42962246 -106554791 + MTA_Mm-int LTR MaLR 1 1098 0 6 912 2780 52 88 0 chr6 42962246 42962610 -106554427 + MTA_Mm LTR MaLR 1 396 0 6 912 272 320 0 13 chr6 42962623 42962699 -106554338 + G-rich Low_complexity Low_complexity 4 78 0 6 912 186 113 0 102 chr6 42962721 42962780 -106554257 + C-rich Low_complexity Low_complexity 2 54 0 6 912 182 218 0 65 chr6 42962861 42962954 -106554083 + GA-rich Low_complexity Low_complexity 1 87 0 6 912 355 317 20 0 chr6 42963014 42963115 -106553922 + GA-rich Low_complexity Low_complexity 2 104 0 6 912 302 162 0 122 chr6 42963217 42963421 -106553616 + G-rich Low_complexity Low_complexity 2 180 0 6 912 213 94 0 0 chr6 42964562 42964594 -106552443 + (T)n Simple_repeat Simple_repeat 1 32 0 6 912 432 0 0 0 chr6 42965726 42965774 -106551263 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 912 2269 51 0 0 chr6 42967336 42967611 -106549426 + L1Md_T LINE L1 6308 6582 0 6 912 365 127 0 0 chr6 42967612 42967667 -106549370 + ORR1C1 LTR MaLR 324 378 0 6 912 3168 48 10 10 chr6 42968549 42968945 -106548092 - MTA_Mm LTR MaLR 0 396 1 6 912 22 70 0 0 chr6 42969173 42969216 -106547821 + AT_rich Low_complexity Low_complexity 1 43 0 6 912 822 198 132 0 chr6 42970242 42970424 -106546613 - URR1A DNA MER1_type -20 206 1 6 912 368 40 20 0 chr6 42970827 42970877 -106546160 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 912 210 71 0 0 chr6 42970968 42970996 -106546041 + (T)n Simple_repeat Simple_repeat 1 28 0 6 912 1546 202 35 48 chr6 42971009 42971383 -106545654 - RLTR17 LTR ERVK 0 692 324 6 912 1036 215 50 0 chr6 42971568 42971768 -106545269 + B3 SINE B2 2 211 -5 6 912 705 63 0 0 chr6 42971882 42971977 -106545060 + (TA)n Simple_repeat Simple_repeat 1 95 0 6 912 31 26 0 0 chr6 42972044 42972082 -106544955 + AT_rich Low_complexity Low_complexity 1 38 0 6 912 329 155 108 40 chr6 42972600 42972674 -106544363 - Lx6 LINE L1 -1237 6223 6145 6 912 216 0 0 0 chr6 42972680 42972704 -106544333 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 912 216 200 44 0 chr6 42973182 42973227 -106543810 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 6 912 313 317 0 104 chr6 42973236 42973370 -106543667 - B3 SINE B2 -5 211 92 6 912 581 271 53 7 chr6 42973442 42973594 -106543443 - B3 SINE B2 -5 211 53 6 912 320 318 11 0 chr6 42973585 42973673 -106543364 + RSINE1 SINE B4 53 141 -24 6 912 350 354 13 77 chr6 42973709 42973865 -106543172 + B4A SINE B4 2 147 -145 6 912 266 171 14 54 chr6 42974028 42974102 -106542935 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 6 912 378 274 0 12 chr6 42974393 42974478 -106542559 + B4 SINE B4 137 220 -72 6 912 369 216 53 23 chr6 42974884 42975055 -106541982 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 6 912 411 21 0 0 chr6 42975090 42975138 -106541899 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 912 263 366 38 15 chr6 42975184 42975317 -106541720 - B1F SINE Alu -13 136 1 6 912 1819 88 0 0 chr6 42975462 42975702 -106541335 - L1_Mm LINE L1 -731 5152 4913 6 912 3455 243 93 65 chr6 42976250 42976995 -106540042 + Lx9 LINE L1 6526 7337 -307 6 912 265 115 37 37 chr6 42976995 42977049 -106539988 - RLTR26 LTR ERVK -316 326 273 6 912 3455 243 93 65 chr6 42977049 42977140 -106539897 + Lx9 LINE L1 7338 7438 -206 6 912 420 20 0 0 chr6 42977140 42977189 -106539848 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 912 3455 243 93 65 chr6 42977189 42977387 -106539650 + Lx9 LINE L1 7439 7644 0 6 912 354 319 43 0 chr6 42977401 42977495 -106539542 + PB1D10 SINE Alu 1 98 -19 6 912 320 133 17 0 chr6 42978229 42978289 -106538748 + (CATA)n Simple_repeat Simple_repeat 3 63 0 6 912 222 150 0 0 chr6 42978827 42978867 -106538170 + (T)n Simple_repeat Simple_repeat 1 40 0 6 912 767 11 11 0 chr6 42978928 42979020 -106538017 + (TC)n Simple_repeat Simple_repeat 2 94 0 6 912 2089 197 38 8 chr6 42979106 42979505 -106537532 - Lx6 LINE L1 -983 6477 6067 6 912 5023 174 20 16 chr6 42979537 42980565 -106536472 - Lx6 LINE L1 -1537 5923 4893 6 912 4343 60 0 21 chr6 42981404 42981966 -106535071 + L1_Mus1 LINE L1 6017 6566 -1 6 912 14331 147 83 52 chr6 42982032 42985585 -106531452 - Lx4B LINE L1 -6 7052 3326 6 912 4335 42 0 2 chr6 42985585 42986106 -106530931 - L1Md_F3 LINE L1 -13 6571 6052 6 912 14331 145 92 40 chr6 42986106 42986744 -106530293 - Lx4B LINE L1 -2552 3325 2727 6 912 1538 23 0 0 chr6 42986727 42986902 -106530135 - L1_Mus1 LINE L1 -642 5925 5751 6 912 4555 71 35 12 chr6 42986902 42987503 -106529534 + L1_Mus1 LINE L1 5953 6567 0 6 912 5872 102 29 2 chr6 42987526 42988892 -106528145 + L1VL4 LINE L1 35 1444 -2115 6 912 10020 55 0 0 chr6 42988889 42990151 -106526886 - L1Md_F2 LINE L1 -1638 4245 2984 6 912 11192 46 0 0 chr6 42990151 42991490 -106525547 + L1Md_F2 LINE L1 4246 5584 -299 6 14 8076 49 3 2 chr6 42991492 42992471 -106524566 + L1Md_F2 LINE L1 5587 6566 -16 6 913 771 112 0 0 chr6 42992476 42992592 -106524445 + (GAAA)n Simple_repeat Simple_repeat 2 117 0 6 913 11898 93 98 4 chr6 42992592 42992838 -106524199 + L1VL4 LINE L1 1435 1700 -1859 6 913 3614 21 136 0 chr6 42992838 42993272 -106523765 + MT2_Mm LTR ERVL 1 493 0 6 913 11898 93 98 4 chr6 42993272 42994835 -106522202 + L1VL4 LINE L1 1701 3414 -145 6 913 4179 172 38 36 chr6 42994976 42995867 -106521170 - Lx4B LINE L1 -3123 2754 1862 6 913 1801 242 15 0 chr6 42996173 42996582 -106520455 + MT2A LTR ERVL 3 417 -116 6 913 204 175 0 24 chr6 42996595 42996636 -106520401 + (TTATA)n Simple_repeat Simple_repeat 3 42 0 6 913 997 103 0 14 chr6 42996729 42996876 -106520161 - B1_Mus2 SINE Alu -1 146 2 6 913 9639 58 4 2 chr6 42996896 42998097 -106518940 - L1_Mm LINE L1 -321 5562 4359 6 913 758 265 128 70 chr6 42998962 42999275 -106517762 + ORR1D2 LTR MaLR 8 338 -32 6 913 640 250 7 0 chr6 42999522 42999666 -106517371 + ORR1D2-int LTR MaLR 13 157 -1213 6 913 548 224 0 0 chr6 42999707 42999823 -106517214 + ORR1D2-int LTR MaLR 535 650 -720 6 913 336 227 66 33 chr6 42999848 42999939 -106517098 + ORR1D2 LTR MaLR 5 98 -272 6 913 696 185 86 0 chr6 43000008 43000079 -106516958 + ORR1D2 LTR MaLR 191 272 -98 1 913 1699 184 53 14 chr6 43000079 43000437 -106516600 - ORR1D1 LTR MaLR -2 372 1 2 913 696 185 86 0 chr6 43000437 43000527 -106516510 + ORR1D2 LTR MaLR 273 365 -5 1 913 1653 150 67 126 chr6 43000937 43001326 -106515711 - ORR1B1 LTR MaLR 0 394 29 3 913 743 236 6 0 chr6 43001332 43001493 -106515544 + Lx6 LINE L1 6481 6642 -818 4 913 238 170 0 0 chr6 43001493 43001540 -106515497 + Lx6 LINE L1 6953 6999 -461 4 913 986 99 57 32 chr6 43001540 43001697 -106515340 + B2_Mm2 SINE B2 1 161 -34 5 913 441 0 0 0 chr6 43001697 43001746 -106515291 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 6 913 6831 71 41 0 chr6 43001746 43002819 -106514218 + L1_Mus1 LINE L1 5453 6567 0 7 913 288 0 0 0 chr6 43002826 43002858 -106514179 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 8 913 1730 231 89 85 chr6 43002863 43003332 -106513705 + Lx7 LINE L1 6979 7479 -217 9 913 324 0 0 0 chr6 43003332 43003368 -106513669 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 913 1730 231 89 85 chr6 43003368 43003613 -106513424 + Lx7 LINE L1 7480 7696 0 9 913 1373 221 113 13 chr6 43003627 43004007 -106513030 + MTD LTR MaLR 1 418 -1 1 913 567 88 0 0 chr6 43004014 43004105 -106512932 + (TC)n Simple_repeat Simple_repeat 1 91 0 1 913 431 206 41 10 chr6 43004226 43004324 -106512713 + MTD LTR MaLR 180 280 -139 1 913 780 204 15 0 chr6 43004749 43004886 -106512151 + B1_Mur4 SINE Alu 7 145 -5 1 913 840 215 56 42 chr6 43004903 43005117 -106511920 + RMER5 LTR ERV1 14 230 -304 1 913 2786 181 80 88 chr6 43005192 43005470 -106511567 + MERVL_2A-int LTR ERVL 3089 3389 -2372 1 913 339 145 0 0 chr6 43005470 43005532 -106511505 + RMER1B Other Other 973 1034 -32 1 913 2786 181 80 88 chr6 43005532 43005915 -106511122 + MERVL_2A-int LTR ERVL 3390 3805 -1956 1 913 228 35 0 0 chr6 43005916 43005945 -106511092 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 913 3993 39 0 0 chr6 43005947 43006414 -106510623 - L1Md_T LINE L1 -9 6573 6107 1 913 3148 46 5 2 chr6 43006414 43006836 -106510201 + L1Md_T LINE L1 5584 5977 -605 1 913 882 158 6 25 chr6 43006846 43007008 -106510029 + MERVL_2A-int LTR ERVL 3804 3962 -1799 1 913 3487 155 77 55 chr6 43007004 43007755 -106509282 + MERVL_2A-int LTR ERVL 4858 5625 -136 1 913 315 226 19 60 chr6 43007782 43007921 -106509116 + ORR1A3-int LTR MaLR 516 639 -1324 2 913 343 73 18 0 chr6 43007921 43007976 -106509061 + MERVL_2A-int LTR ERVL 5706 5761 0 1 913 1093 66 137 12 chr6 43007987 43008155 -106508882 - B2_Mm2 SINE B2 -6 189 1 2 913 1021 242 192 125 chr6 43008156 43008607 -106508430 + MT2A LTR ERVL 3 465 -68 1 913 441 0 0 0 chr6 43008607 43008656 -106508381 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 2 913 1021 242 192 125 chr6 43008656 43008699 -106508338 + MT2A LTR ERVL 466 530 -3 1 913 2550 233 29 65 chr6 43008801 43009583 -106507454 - RMER1B Other Other -4 1062 244 2 913 2329 186 91 8 chr6 43009749 43010231 -106506806 - RMER5 LTR ERV1 0 534 13 2 913 879 73 1 19 chr6 43010546 43010674 -106506363 + B1_Mus2 SINE Alu 23 147 0 2 913 189 0 0 0 chr6 43010845 43010866 -106506171 + (CGAG)n Simple_repeat Simple_repeat 3 23 0 2 913 1170 105 0 0 chr6 43010868 43011040 -106505997 + (GA)n Simple_repeat Simple_repeat 1 172 0 2 913 1497 60 0 19 chr6 43012138 43012344 -106504693 - L1_Mus1 LINE L1 0 6567 6366 2 913 487 60 0 0 chr6 43012344 43012411 -106504626 + L1Md_F2 LINE L1 6210 6276 -306 2 913 1048 109 109 0 chr6 43013078 43013252 -106503785 + B2_Mm2 SINE B2 3 195 0 3 913 1983 221 62 42 chr6 43013252 43013753 -106503284 - RMER5 LTR ERV1 -11 523 13 3 913 1047 135 0 0 chr6 43013996 43014307 -106502730 + (CA)n Simple_repeat Simple_repeat 1 311 0 3 913 955 221 134 92 chr6 43015413 43015496 -106501541 + MT2B LTR ERVL 1 81 -452 3 913 645 14 0 0 chr6 43015496 43015570 -106501467 + (TTTTG)n Simple_repeat Simple_repeat 3 76 0 3 913 1052 221 134 92 chr6 43015570 43015680 -106501357 + MT2B LTR ERVL 245 337 -264 3 913 477 0 0 0 chr6 43015680 43015733 -106501304 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 913 222 37 0 0 chr6 43015733 43015759 -106501278 + (TATG)n Simple_repeat Simple_repeat 4 30 0 3 913 1052 254 52 69 chr6 43015759 43015978 -106501059 + MT2B LTR ERVL 338 549 -52 3 913 465 19 0 0 chr6 43015978 43016032 -106501005 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 913 1052 254 52 69 chr6 43016032 43016081 -106500956 + MT2B LTR ERVL 550 599 -2 3 913 1260 232 19 11 chr6 43016322 43016588 -106500449 + RMER5 LTR ERV1 23 290 -244 3 913 1962 114 55 10 chr6 43016641 43016950 -106500087 - ORR1A4 LTR MaLR -2 327 5 3 913 389 286 101 13 chr6 43016961 43017188 -106499849 - RMER17C LTR ERVK -41 369 123 4 913 554 104 0 0 chr6 43017321 43017398 -106499639 + RMER5 LTR ERV1 458 534 0 4 913 590 224 76 7 chr6 43018071 43018215 -106498822 + URR1A DNA MER1_type 14 167 -59 4 913 3011 69 10 8 chr6 43018215 43018610 -106498427 - MTA_Mm LTR MaLR 0 396 1 4 913 7748 86 9 5 chr6 43018610 43019703 -106497334 - MTA_Mm-int LTR MaLR 0 1098 1 4 913 3086 66 0 12 chr6 43019703 43020104 -106496933 - MTA_Mm LTR MaLR 0 396 1 4 913 603 261 25 27 chr6 43020112 43020394 -106496643 - Lx6 LINE L1 -575 6885 6455 4 913 2712 104 7 0 chr6 43020387 43020837 -106496200 + MusHAL1 LINE L1 79 531 -2181 4 913 2241 209 20 8 chr6 43020834 43021336 -106495701 + Lx4B LINE L1 6434 6941 -117 4 913 425 289 79 23 chr6 43022263 43022440 -106494597 - B3A SINE B2 -10 188 2 4 913 23 0 0 0 chr6 43022527 43022550 -106494487 + AT_rich Low_complexity Low_complexity 1 23 0 4 913 1394 256 85 21 chr6 43022569 43023040 -106493997 + RMER5 LTR ERV1 33 533 -1 4 913 25 0 0 0 chr6 43023437 43023462 -106493575 + AT_rich Low_complexity Low_complexity 1 25 0 5 913 32 26 0 0 chr6 43023962 43024001 -106493036 + AT_rich Low_complexity Low_complexity 1 39 0 5 913 324 0 0 0 chr6 43024757 43024793 -106492244 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 913 180 200 0 0 chr6 43024822 43024862 -106492175 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 913 1174 300 161 9 chr6 43024958 43025506 -106491531 - Lx6 LINE L1 -294 7166 6536 5 913 840 301 30 7 chr6 43025519 43025820 -106491217 - Lx6 LINE L1 -1180 6280 5973 5 913 459 348 90 39 chr6 43028145 43028501 -106488536 + L1MD2 LINE L1 5517 5890 -469 5 913 1129 199 62 4 chr6 43029120 43029362 -106487675 - Lx5 LINE L1 -457 6593 6338 5 913 826 180 6 6 chr6 43029362 43029530 -106487507 + Lx4B LINE L1 4571 4738 -1139 5 913 1269 270 92 81 chr6 43029530 43030204 -106486833 + RMER17B LTR ERVK 356 899 -9 5 913 3079 186 26 8 chr6 43030216 43030973 -106486064 + Lx4B LINE L1 5432 6215 -843 5 913 3139 42 19 31 chr6 43032167 43032583 -106484454 - IAPLTR2a LTR ERVK 0 411 1 5 913 2016 142 5 46 chr6 43033307 43033719 -106483318 - L1_Mur2 LINE L1 -3567 2310 1916 6 913 1014 228 204 0 chr6 43033716 43034040 -106482997 - L1_Mur2 LINE L1 -5782 1304 915 6 913 554 170 0 0 chr6 43034574 43034680 -106482357 + L1_Mur2 LINE L1 5003 5108 -769 6 913 7316 100 10 3 chr6 43034684 43035987 -106481050 + L1_Mus1 LINE L1 4697 6011 -556 6 913 3139 89 23 17 chr6 43035981 43036505 -106480532 + MusHAL1 LINE L1 468 994 -1718 6 913 3533 109 8 5 chr6 43036498 43037439 -106479598 - L1VL4 LINE L1 -2216 1343 399 6 913 363 154 0 0 chr6 43037979 43038044 -106478993 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 913 355 360 45 0 chr6 43038084 43038284 -106478753 + L1M4 LINE L1 4652 4860 -1286 6 913 318 286 185 62 chr6 43038338 43038565 -106478472 + MLT2B4 LTR ERVL 61 315 -241 6 913 683 116 34 23 chr6 43038651 43038827 -106478210 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 6 913 423 0 0 0 chr6 43038905 43038952 -106478085 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 913 569 302 14 0 chr6 43038954 43039093 -106477944 - RSINE1 SINE B4 -23 142 2 7 913 7402 40 2 4 chr6 43041390 43042298 -106474739 + L1Md_F2 LINE L1 5674 6579 -3 7 913 1086 95 7 0 chr6 43042318 43042465 -106474572 + B1_Mus1 SINE Alu 1 148 0 7 913 218 200 0 0 chr6 43042467 43042517 -106474520 + A-rich Low_complexity Low_complexity 1 50 0 7 913 237 33 0 0 chr6 43042943 43042973 -106474064 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 913 3151 147 77 2 chr6 43042978 43043522 -106473515 - L1_Mus3 LINE L1 -6 6632 6048 7 913 24 0 0 0 chr6 43044139 43044163 -106472874 + AT_rich Low_complexity Low_complexity 1 24 0 7 913 647 229 27 27 chr6 43045374 43045522 -106471515 + B1_Mur4 SINE Alu 2 149 -1 7 913 311 328 40 109 chr6 43045957 43046231 -106470806 + L1M5 LINE L1 4053 4307 -1839 7 913 1067 322 73 13 chr6 43046234 43046839 -106470198 + Lx8 LINE L1 6361 7001 -472 7 913 394 232 202 40 chr6 43046983 43047230 -106469807 + Lx8 LINE L1 7187 7473 0 7 913 242 264 78 141 chr6 43047710 43047838 -106469199 + B4A SINE B4 1 120 -172 8 913 597 312 7 0 chr6 43047742 43047886 -106469151 + B3A SINE B2 16 160 -38 8 913 347 240 114 9 chr6 43047932 43048037 -106469000 + PB1D7 SINE Alu 5 120 0 8 913 250 285 17 115 chr6 43048566 43048702 -106468335 + MTEa LTR MaLR 20 146 -233 8 913 33 43 0 0 chr6 43049064 43049111 -106467926 + AT_rich Low_complexity Low_complexity 1 47 0 8 913 492 18 0 0 chr6 43049859 43049916 -106467121 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 8 913 220 102 0 39 chr6 43049967 43050018 -106467019 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 913 5394 135 36 9 chr6 43050025 43051177 -106465860 - MusHAL1 LINE L1 -1669 1684 501 8 913 276 138 77 0 chr6 43051338 43051403 -106465634 - B2_Mm1t SINE B2 -7 186 117 8 913 260 70 23 0 chr6 43051632 43051675 -106465362 + (TTG)n Simple_repeat Simple_repeat 2 45 0 8 913 1089 75 7 7 chr6 43051688 43051835 -106465202 - B1_Mus2 SINE Alu 0 147 1 9 913 2283 269 128 15 chr6 43051911 43052711 -106464326 + RCHARR1 DNA MER1_type 83 972 -2 9 913 236 337 48 0 chr6 43052798 43052881 -106464156 - MER58A DNA MER1_type -105 119 33 9 913 27 0 0 0 chr6 43053178 43053205 -106463832 + AT_rich Low_complexity Low_complexity 1 27 0 9 913 472 330 50 14 chr6 43053399 43053617 -106463420 - Lx8 LINE L1 -279 7194 6969 9 913 282 0 0 0 chr6 43053776 43053816 -106463221 + L1_Mus2 LINE L1 6526 6565 -1 9 913 4274 47 0 24 chr6 43053901 43054446 -106462591 - L1Md_F2 LINE L1 -13 6569 6038 9 913 324 102 0 0 chr6 43054503 43054552 -106462485 + B1_Mur1 SINE Alu 101 149 0 9 913 681 305 0 75 chr6 43054660 43054887 -106462150 - B3 SINE B2 -6 210 1 9 913 24 0 0 0 chr6 43055124 43055148 -106461889 + AT_rich Low_complexity Low_complexity 1 24 0 9 913 1650 203 37 34 chr6 43055239 43055268 -106461769 + ORR1C2 LTR MaLR 1 27 -357 1 913 1039 157 5 21 chr6 43055268 43055457 -106461580 + B2_Mm2 SINE B2 2 187 -8 1 913 1650 203 37 34 chr6 43055457 43055810 -106461227 + ORR1C2 LTR MaLR 28 384 0 1 913 369 95 0 0 chr6 43056590 43056653 -106460384 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 1 913 504 86 0 0 chr6 43057328 43057398 -106459639 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 913 210 278 19 0 chr6 43057420 43057474 -106459563 - MIR3 SINE MIR -45 163 109 1 913 23 54 0 0 chr6 43057854 43057891 -106459146 + AT_rich Low_complexity Low_complexity 1 37 0 1 913 1316 93 28 0 chr6 43058091 43058273 -106458764 - B2_Mm1t SINE B2 -6 187 1 1 913 184 174 43 11 chr6 43058705 43058798 -106458239 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 913 665 197 90 0 chr6 43059079 43059201 -106457836 - B1_Mur2 SINE Alu -11 138 6 1 913 1034 108 19 35 chr6 43060557 43060762 -106456275 - Lx2A LINE L1 -517 6491 6306 1 913 466 329 105 6 chr6 43060802 43060964 -106456073 + B3A SINE B2 13 190 -8 1 913 366 239 146 9 chr6 43061078 43061146 -106455891 + L1_Mur3 LINE L1 5746 5816 -64 1 913 270 0 0 0 chr6 43061146 43061176 -106455861 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 913 366 239 146 9 chr6 43061176 43061217 -106455820 + L1_Mur3 LINE L1 5817 5869 -11 1 913 861 126 173 47 chr6 43061215 43061406 -106455631 + Lx LINE L1 6440 6654 0 1 913 2928 153 30 22 chr6 43061840 43062381 -106454656 - Lx LINE L1 -673 5210 4666 1 913 6889 118 24 9 chr6 43062383 43063775 -106453262 + Lx LINE L1 5218 6631 -23 1 913 290 194 0 0 chr6 43063775 43063837 -106453200 - U2 snRNA snRNA -126 62 1 1 913 4210 86 2 0 chr6 43063841 43064402 -106452635 + L1_Mus1 LINE L1 6006 6567 0 1 913 219 114 0 0 chr6 43064405 43064440 -106452597 + (GAAAA)n Simple_repeat Simple_repeat 1 35 0 1 913 541 312 19 0 chr6 43065377 43065534 -106451503 - RSINE1 SINE B4 -2 163 4 1 913 2351 200 87 20 chr6 43066966 43067020 -106450017 - Lx5 LINE L1 -2 7048 6976 1 913 393 22 0 0 chr6 43067020 43067066 -106449971 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 913 2351 200 87 20 chr6 43067066 43067507 -106449530 - Lx5 LINE L1 -75 6975 6520 1 913 268 204 91 0 chr6 43067513 43067601 -106449436 - L1M2 LINE L1 -3303 2840 2745 1 913 21 0 0 0 chr6 43068571 43068592 -106448445 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 239 318 23 0 chr6 43068639 43068727 -106448310 + PB1D10 SINE Alu 26 115 -2 1 913 5329 113 33 1 chr6 43068871 43069793 -106447244 - L1VL2 LINE L1 -1789 1826 878 1 913 6262 41 0 0 chr6 43069793 43070547 -106446490 + L1Md_F2 LINE L1 5820 6573 -9 1 913 5187 129 64 16 chr6 43070547 43071254 -106445783 - L1VL2 LINE L1 -5458 877 126 1 913 186 43 0 0 chr6 43071436 43071459 -106445578 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 913 2873 76 2 20 chr6 43073258 43073660 -106443377 + L1_Mus2 LINE L1 6166 6560 -6 1 913 2129 65 0 0 chr6 43073741 43074018 -106443019 + L1Md_F2 LINE L1 6306 6582 0 1 913 7018 107 15 4 chr6 43074057 43075074 -106441963 + L1_Mus3 LINE L1 5588 6615 -23 1 913 25 0 0 0 chr6 43075075 43075100 -106441937 + AT_rich Low_complexity Low_complexity 1 25 0 1 913 566 252 20 59 chr6 43075116 43075268 -106441769 + B1_Mus1 SINE Alu 2 147 -1 1 913 38230 40 0 3 chr6 43075395 43081614 -106435423 - L1Md_T LINE L1 0 6585 285 1 913 21 0 0 0 chr6 43081811 43081832 -106435205 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 276 293 17 17 chr6 43082139 43082257 -106434780 + L1M5 LINE L1 4195 4312 -1834 1 913 1450 334 91 19 chr6 43082257 43083267 -106433770 + Lx8 LINE L1 6361 7443 -30 1 913 226 250 94 156 chr6 43083773 43083901 -106433136 + B4A SINE B4 1 120 -172 1 913 506 326 7 0 chr6 43083805 43083940 -106433097 + B3A SINE B2 16 151 -47 1 913 440 210 89 10 chr6 43084000 43084101 -106432936 + PB1D7 SINE Alu 5 113 -7 1 913 194 57 0 54 chr6 43085201 43085238 -106431799 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 1 913 347 235 245 0 chr6 43085239 43085341 -106431696 - B1_Mus1 SINE Alu 0 148 22 1 913 1154 45 19 0 chr6 43085364 43085519 -106431518 + (TTTCC)n Simple_repeat Simple_repeat 3 160 0 1 913 701 177 0 7 chr6 43085521 43085669 -106431368 + CT-rich Low_complexity Low_complexity 3 149 0 1 913 3328 21 0 0 chr6 43085881 43086265 -106430772 - L1Md_F2 LINE L1 -592 5990 5607 1 913 432 51 0 0 chr6 43086371 43086430 -106430607 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1 913 875 163 7 0 chr6 43086431 43086584 -106430453 - B2_Mm2 SINE B2 -41 154 1 1 913 2059 50 10 3 chr6 43086616 43086884 -106430153 - L1_Mus1 LINE L1 -735 5832 5588 1 913 21 0 0 0 chr6 43086930 43086951 -106430086 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 180 111 0 0 chr6 43087212 43087239 -106429798 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1 913 32 0 0 0 chr6 43087793 43087825 -106429212 + AT_rich Low_complexity Low_complexity 1 32 0 1 913 6737 16 1 0 chr6 43088480 43089386 -106427651 - L1Md_A LINE L1 -972 6028 5119 1 913 4974 47 0 0 chr6 43089386 43089988 -106427049 + L1Md_T LINE L1 5981 6582 0 1 913 32 0 0 0 chr6 43090000 43090032 -106427005 + AT_rich Low_complexity Low_complexity 1 32 0 1 913 387 0 0 0 chr6 43090094 43090137 -106426900 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 1 913 198 71 0 0 chr6 43090298 43090326 -106426711 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1 913 5348 135 56 11 chr6 43090327 43091457 -106425580 - MusHAL1 LINE L1 -1669 1684 501 1 913 324 84 51 90 chr6 43091608 43091686 -106425351 - B2_Mm1t SINE B2 -2 191 117 1 913 2313 279 84 19 chr6 43091977 43092811 -106424226 + RCHARR1 DNA MER1_type 85 972 -2 1 913 301 306 24 0 chr6 43092899 43092984 -106424053 - MER58A DNA MER1_type -105 119 33 1 913 29 28 0 0 chr6 43093274 43093310 -106423727 + AT_rich Low_complexity Low_complexity 1 36 0 1 913 428 377 79 19 chr6 43093510 43093726 -106423311 - Lx8 LINE L1 -291 7182 6954 1 913 609 312 21 5 chr6 43093845 43094035 -106423002 - Lx8 LINE L1 -717 6756 6564 1 913 25 0 0 0 chr6 43094163 43094188 -106422849 + AT_rich Low_complexity Low_complexity 1 25 0 1 913 422 18 0 18 chr6 43094278 43094334 -106422703 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 1 913 211 132 26 0 chr6 43094349 43094387 -106422650 + B1_Mur1 SINE Alu 98 136 -13 1 913 503 311 86 10 chr6 43094506 43094536 -106422501 - B3 SINE B2 -3 213 174 1 913 339 25 0 0 chr6 43094536 43094576 -106422461 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 1 913 503 311 86 10 chr6 43094576 43094743 -106422294 - B3 SINE B2 -43 173 1 1 913 26 0 0 0 chr6 43094988 43095014 -106422023 + AT_rich Low_complexity Low_complexity 1 26 0 1 913 1018 183 6 11 chr6 43095137 43095314 -106421723 + B2_Mm2 SINE B2 6 181 -14 1 913 1379 204 79 27 chr6 43095338 43095354 -106421683 + ORR1C2 LTR MaLR 40 53 -331 1 913 1535 128 29 96 chr6 43095354 43095699 -106421338 - RLTRETN_Mm LTR ERVK 0 322 1 1 913 1379 204 79 27 chr6 43095699 43096010 -106421027 + ORR1C2 LTR MaLR 54 384 0 1 913 243 103 0 0 chr6 43096801 43096840 -106420197 + (GGTTG)n Simple_repeat Simple_repeat 2 40 0 1 913 21 0 0 0 chr6 43097431 43097452 -106419585 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 267 54 0 0 chr6 43097528 43097565 -106419472 + (CAGAGA)n Simple_repeat Simple_repeat 4 40 0 1 913 657 92 35 7 chr6 43098287 43098430 -106418607 + (TG)n Simple_repeat Simple_repeat 1 147 0 1 913 696 149 90 8 chr6 43098735 43098857 -106418180 - B1_Mur2 SINE Alu -13 136 5 1 913 913 167 167 0 chr6 43099260 43099452 -106417585 - URR1A DNA MER1_type -2 224 1 1 913 4096 130 8 6 chr6 43100818 43101477 -106415560 - Lx2A LINE L1 -1 7007 6348 1 913 299 44 22 0 chr6 43101477 43101522 -106415515 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1 913 21 0 0 0 chr6 43101636 43101657 -106415380 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 21 0 0 0 chr6 43102807 43102828 -106414209 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 552 91 0 0 chr6 43102847 43102935 -106414102 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 913 236 312 13 0 chr6 43103011 43103088 -106413949 - B3A SINE B2 -118 80 3 1 913 612 101 0 0 chr6 43104531 43104620 -106412417 + (TTCC)n Simple_repeat Simple_repeat 1 89 0 1 913 2233 218 76 4 chr6 43104620 43105108 -106411929 - Lx5 LINE L1 -8 7042 6520 1 913 246 216 78 13 chr6 43105946 43106024 -106411013 - ORR1E LTR MaLR -3 376 276 1 913 695 292 0 31 chr6 43106049 43106208 -106410829 - RSINE1 SINE B4 0 165 12 1 913 508 307 66 103 chr6 43106207 43106508 -106410529 - ORR1E LTR MaLR -66 293 4 1 913 272 48 0 23 chr6 43106973 43107016 -106410021 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 913 311 293 0 29 chr6 43107030 43107132 -106409905 + GA-rich Low_complexity Low_complexity 6 104 0 1 913 306 125 0 0 chr6 43107138 43107186 -106409851 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1 913 1100 284 50 44 chr6 43107186 43107529 -106409508 - ORR1E LTR MaLR -14 345 1 1 913 318 246 71 78 chr6 43107683 43107698 -106409339 + RLTR25B LTR ERVK 430 482 -546 1 913 736 105 0 0 chr6 43107698 43107803 -106409234 + B1_Mus2 SINE Alu 43 147 0 1 913 318 246 71 78 chr6 43107803 43107824 -106409213 + RLTR25B LTR ERVK 483 569 -459 1 913 318 361 136 0 chr6 43108181 43108394 -106408643 + L1M4b LINE L1 859 1100 -6234 1 913 1851 55 0 0 chr6 43108399 43108635 -106408402 - L1_Mus2 LINE L1 -480 6086 5851 1 913 422 303 55 27 chr6 43108879 43108915 -106408122 + CYRA11_Mm Unknown Y-chromosome 133 173 -444 1 913 1030 146 12 0 chr6 43108915 43109080 -106407957 - URR1A DNA MER1_type 0 226 60 1 913 715 243 146 60 chr6 43111423 43111725 -106405312 + ORR1E LTR MaLR 32 359 0 1 913 450 0 0 0 chr6 43111994 43112044 -106404993 + (TTTTG)n Simple_repeat Simple_repeat 4 53 0 1 913 923 273 5 0 chr6 43112044 43112253 -106404784 - ID_B1 SINE B4 -12 212 3 1 913 383 264 185 35 chr6 43112334 43112620 -106404417 - Charlie1 DNA MER1_type -6 2775 2447 1 913 357 320 24 8 chr6 43112619 43112742 -106404295 - Charlie1 DNA MER1_type -2641 140 16 1 913 687 81 0 0 chr6 43114021 43114120 -106402917 + (GA)n Simple_repeat Simple_repeat 2 100 0 2 913 568 158 29 19 chr6 43114212 43114315 -106402722 - URR1B DNA MER1_type -54 171 68 2 913 227 202 109 119 chr6 43115285 43115386 -106401651 + IAPLTR4 LTR ERVK 215 314 -31 2 913 25 0 0 0 chr6 43116024 43116049 -106400988 + AT_rich Low_complexity Low_complexity 1 25 0 2 913 383 293 106 22 chr6 43116189 43116500 -106400537 + L1MC4 LINE L1 7313 7649 -393 2 913 801 82 0 0 chr6 43116750 43116860 -106400177 - B1_Mus1 SINE Alu -37 111 2 2 913 652 289 0 0 chr6 43118125 43118267 -106398770 - B1_Mur2 SINE Alu -7 142 1 2 913 693 297 98 52 chr6 43118492 43118684 -106398353 + L1M4 LINE L1 3086 3278 -2868 2 913 393 323 122 42 chr6 43118684 43118946 -106398091 + B4A SINE B4 4 286 -6 2 913 693 297 98 52 chr6 43118946 43119688 -106397349 + L1M4 LINE L1 3279 4063 -2083 2 913 463 308 15 10 chr6 43119773 43119984 -106397053 + L1MA4 LINE L1 5399 5605 -275 2 913 493 286 90 12 chr6 43119968 43120134 -106396903 + Lx8 LINE L1 6944 7122 -351 2 913 306 350 195 8 chr6 43120173 43120409 -106396628 - L2 LINE L2 -553 2866 2587 2 913 228 200 0 0 chr6 43120435 43120485 -106396552 + GA-rich Low_complexity Low_complexity 2 51 0 2 913 628 304 35 14 chr6 43120485 43120769 -106396268 + L1MA4 LINE L1 5640 5929 -371 2 913 563 330 114 16 chr6 43120995 43121303 -106395734 + Lx8 LINE L1 7136 7473 0 2 913 414 293 18 18 chr6 43121424 43121594 -106395443 + L1M2 LINE L1 5595 5764 -533 2 914 575 139 0 10 chr6 43125478 43125580 -106391457 + (TC)n Simple_repeat Simple_repeat 2 102 0 2 914 225 0 0 0 chr6 43125804 43125829 -106391208 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 914 270 0 0 0 chr6 43127408 43127438 -106389599 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 914 263 311 94 23 chr6 43128384 43128555 -106388482 + RMER20B LTR ERVK 180 366 -150 2 914 547 271 8 23 chr6 43129459 43129591 -106387446 + RSINE1 SINE B4 12 141 -24 2 914 225 0 0 0 chr6 43129591 43129616 -106387421 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 914 36 23 0 0 chr6 43129619 43129662 -106387375 + AT_rich Low_complexity Low_complexity 1 43 0 2 914 618 160 440 0 chr6 43129674 43129824 -106387213 + B3 SINE B2 1 216 0 2 914 744 114 13 51 chr6 43129834 43129991 -106387046 - Lx3C LINE L1 -1 6975 6825 2 914 234 0 0 0 chr6 43130065 43130091 -106386946 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 914 855 90 0 0 chr6 43130591 43130713 -106386324 + (TCC)n Simple_repeat Simple_repeat 3 124 0 2 914 528 217 9 0 chr6 43131334 43131440 -106385597 - B1_Mus2 SINE Alu -34 113 7 2 914 1929 138 16 3 chr6 43131879 43132184 -106384853 - RLTR27 LTR ERVK 0 309 1 2 914 437 145 12 12 chr6 43132184 43132268 -106384769 - MMERVK10C-int LTR ERVK 0 7581 7498 2 914 2337 54 3 3 chr6 43132269 43132587 -106384450 - RLTR10A LTR ERVK -93 318 1 2 914 216 78 38 38 chr6 43132620 43132673 -106384364 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2 914 4596 151 24 18 chr6 43132940 43134258 -106382779 + L1VL4 LINE L1 266 1592 -1967 2 914 7232 173 25 10 chr6 43134255 43135502 -106381535 + Lx2 LINE L1 4609 5860 -26 2 914 734 22 11 0 chr6 43135502 43135594 -106381443 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 914 7232 149 81 21 chr6 43135594 43136644 -106380393 + Lx2 LINE L1 5858 6983 -14 2 914 235 371 10 0 chr6 43136692 43136789 -106380248 + RLTR33 LTR ERVK 501 598 -80 2 914 1266 89 11 6 chr6 43137448 43137628 -106379409 - B2_Mm2 SINE B2 -14 181 1 2 914 309 264 0 0 chr6 43138781 43138891 -106378146 + (TG)n Simple_repeat Simple_repeat 1 110 0 2 914 894 282 85 4 chr6 43138891 43139161 -106377876 - B4A SINE B4 0 292 1 2 914 576 311 80 19 chr6 43139347 43139560 -106377477 - MER21B LTR ERV1 -75 788 563 2 914 1361 78 0 10 chr6 43140197 43140390 -106376647 - B2_Mm2 SINE B2 0 195 5 2 914 436 305 192 44 chr6 43140616 43140866 -106376171 + RMER15 LTR ERVL 274 560 -15 2 914 20359 25 1 0 chr6 43141612 43144670 -106372367 - L1Md_T LINE L1 0 6582 3523 2 914 5609 167 46 24 chr6 43145108 43146259 -106370778 - Lx4B LINE L1 -17 7041 5865 2 914 3192 167 6 2 chr6 43146259 43146794 -106370243 + Lx4B LINE L1 5279 5815 -62 2 914 261 0 0 0 chr6 43149067 43149096 -106367941 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 914 387 0 0 0 chr6 43149096 43149138 -106367899 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 914 27 29 0 0 chr6 43149251 43149285 -106367752 + AT_rich Low_complexity Low_complexity 1 34 0 2 914 607 274 0 0 chr6 43150480 43150604 -106366433 + RSINE1 SINE B4 9 132 -33 2 914 220 266 0 59 chr6 43153645 43153713 -106363324 - MIRb SINE MIR -25 243 180 2 914 559 161 17 0 chr6 43154157 43154275 -106362762 + CT-rich Low_complexity Low_complexity 2 121 0 2 914 2359 35 28 0 chr6 43154342 43154627 -106362410 - L1_Mus2 LINE L1 -680 5886 5594 2 914 4921 57 10 53 chr6 43154627 43155319 -106361718 + L1_Mus2 LINE L1 5905 6566 0 2 914 3863 156 214 40 chr6 43155332 43156208 -106360829 - RLTR25B LTR ERVK 0 1028 1 2 914 293 82 0 20 chr6 43156750 43156800 -106360237 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 914 351 349 15 8 chr6 43156933 43157066 -106359971 - MER5A1 DNA MER1_type -20 146 13 2 914 507 312 74 5 chr6 43157506 43157696 -106359341 - MER21B LTR ERV1 -88 775 573 2 914 24 32 0 0 chr6 43158378 43158409 -106358628 + AT_rich Low_complexity Low_complexity 1 31 0 2 914 309 337 25 108 chr6 43158498 43158701 -106358336 + RMER15 LTR ERVL 7 192 -383 2 914 588 284 51 6 chr6 43158688 43158865 -106358172 + RMER15 LTR ERVL 300 484 -91 2 914 234 0 0 0 chr6 43159131 43159157 -106357880 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 2 914 2311 239 108 79 chr6 43159190 43160122 -106356915 - Lx7 LINE L1 0 7696 6738 2 914 651 191 36 60 chr6 43160110 43160277 -106356760 - Lx7 LINE L1 -1789 5907 5745 2 914 232 303 15 22 chr6 43160612 43160747 -106356290 + GA-rich Low_complexity Low_complexity 1 134 0 2 914 891 221 65 9 chr6 43160904 43161119 -106355918 - Lx7 LINE L1 -119 5761 5535 2 914 277 246 16 0 chr6 43161281 43161342 -106355695 - ORR1C1 LTR MaLR -126 252 191 2 914 3809 37 4 4 chr6 43161363 43161828 -106355209 - L1Md_F2 LINE L1 -2 6580 6116 2 914 813 143 14 0 chr6 43161858 43161998 -106355039 + B1_Mus1 SINE Alu 6 147 -1 2 914 589 207 33 0 chr6 43162294 43162415 -106354622 - B1_Mus1 SINE Alu -23 125 1 2 914 248 369 105 19 chr6 43164977 43165187 -106351850 - MamRep605 Unknown Unknown -202 674 447 2 914 22 0 0 0 chr6 43168080 43168102 -106348935 + AT_rich Low_complexity Low_complexity 1 22 0 2 914 408 286 41 32 chr6 43168420 43168543 -106348494 + B1_Mur2 SINE Alu 21 144 -5 2 914 3570 98 57 9 chr6 43170565 43171111 -106345926 - L1_Mus3 LINE L1 -2 6636 6065 2 914 20213 135 15 10 chr6 43171113 43175464 -106341573 + L1_Mus3 LINE L1 2262 6635 -3 2 914 13799 106 47 18 chr6 43175480 43178394 -106338643 - L1_Mur1 LINE L1 -2457 3429 100 2 914 603 182 2 53 chr6 43179206 43179361 -106337676 - Lx8 LINE L1 -386 5926 5742 2 914 278 280 15 22 chr6 43179693 43179828 -106337209 + GA-rich Low_complexity Low_complexity 1 134 0 2 914 835 228 61 9 chr6 43179970 43180200 -106336837 - Lx8 LINE L1 -1694 5779 5535 2 914 837 173 7 0 chr6 43180368 43180507 -106336530 + B1_Mus1 SINE Alu 3 142 -6 2 914 585 210 34 0 chr6 43180809 43180928 -106336109 - B1_Mus1 SINE Alu -23 125 3 2 914 324 0 0 0 chr6 43182798 43182834 -106334203 + (CATA)n Simple_repeat Simple_repeat 1 36 0 2 914 527 216 138 0 chr6 43187113 43187229 -106329808 + B1_Mur2 SINE Alu 13 144 -5 2 914 195 167 0 0 chr6 43187231 43187273 -106329764 + (CAAG)n Simple_repeat Simple_repeat 1 42 0 2 914 206 233 0 0 chr6 43189314 43189357 -106327680 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 2 914 659 294 46 23 chr6 43189528 43189744 -106327293 - MER21B LTR ERV1 -73 790 570 2 914 365 198 0 12 chr6 43191471 43191553 -106325484 - B1_Mur3 SINE Alu 0 149 69 2 914 266 309 87 8 chr6 43191619 43191746 -106325291 - MIR SINE MIR -61 201 65 2 914 316 97 51 34 chr6 43192025 43192142 -106324895 + T-rich Low_complexity Low_complexity 4 122 0 2 914 469 289 32 96 chr6 43192143 43192361 -106324676 - B3 SINE B2 -1 215 12 2 914 209 33 33 0 chr6 43192636 43192666 -106324371 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 914 1102 83 0 20 chr6 43192666 43192804 -106324233 - B1_Mus1 SINE Alu -10 138 2 2 914 396 0 0 0 chr6 43192904 43192948 -106324089 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 2 914 744 136 19 93 chr6 43192971 43193133 -106323904 + URR1A DNA MER1_type 77 226 0 2 914 716 321 100 2 chr6 43193980 43194329 -106322708 - Tigger6a DNA MER2_type -462 621 233 2 914 2549 112 10 25 chr6 43195245 43195647 -106321390 - Lx LINE L1 -3 6651 6256 2 914 896 257 71 26 chr6 43195650 43195918 -106321119 + Lx5 LINE L1 6044 6323 -727 2 914 1384 218 90 17 chr6 43195899 43196253 -106320784 + Lx5 LINE L1 6627 7006 -44 2 914 1520 159 28 14 chr6 43196253 43196540 -106320497 + RLTR28B LTR ERVL 166 456 -25 2 914 1605 218 101 22 chr6 43196589 43197044 -106319993 + Lx7 LINE L1 6917 7407 -289 2 914 236 77 0 25 chr6 43197077 43197117 -106319920 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 914 236 196 22 0 chr6 43197198 43197244 -106319793 + GA-rich Low_complexity Low_complexity 3 49 0 2 914 214 299 21 65 chr6 43197840 43197933 -106319104 + B4A SINE B4 3 91 -201 2 914 579 299 116 11 chr6 43197964 43198153 -106318884 + B4A SINE B4 84 292 0 2 914 194 208 0 19 chr6 43198156 43198210 -106318827 + (CATA)n Simple_repeat Simple_repeat 4 56 0 2 914 196 352 175 6 chr6 43198367 43198550 -106318487 - MIR SINE MIR -17 245 32 2 914 414 0 0 0 chr6 43198636 43198682 -106318355 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2 914 618 286 78 21 chr6 43198695 43199027 -106318010 + Lx8 LINE L1 6900 7250 -223 2 914 452 171 0 19 chr6 43199751 43199858 -106317179 + GA-rich Low_complexity Low_complexity 4 108 0 2 914 444 298 29 132 chr6 43200188 43200567 -106316470 - L1MA8 LINE L1 -262 6029 5690 2 914 901 256 19 19 chr6 43200701 43200916 -106316121 + B3 SINE B2 1 215 -1 2 914 349 245 59 13 chr6 43201158 43201311 -106315726 + L1MA8 LINE L1 6061 6220 -71 3 914 524 204 60 126 chr6 43201341 43201492 -106315545 + B1_Mur4 SINE Alu 3 143 -7 3 914 234 0 0 0 chr6 43201495 43201521 -106315516 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 914 189 74 0 0 chr6 43201521 43201548 -106315489 + (CATA)n Simple_repeat Simple_repeat 2 28 0 3 914 2070 69 3 38 chr6 43202137 43202425 -106314612 - L1_Mus1 LINE L1 0 6567 6290 3 914 504 0 0 0 chr6 43202441 43202497 -106314540 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 914 1049 163 10 30 chr6 43202503 43202705 -106314332 - Lx3A LINE L1 -7 6974 6777 3 914 1010 98 128 0 chr6 43203038 43203202 -106313835 - B2_Mm2 SINE B2 -7 188 4 3 914 280 232 14 42 chr6 43203224 43203296 -106313741 - ID SINE ID -142 82 13 3 914 373 330 55 15 chr6 43203671 43203845 -106313192 + B4A SINE B4 112 292 0 3 914 392 252 205 0 chr6 43203976 43204127 -106312910 + L1MC LINE L1 5583 5764 -2118 3 914 474 319 56 6 chr6 43206153 43206314 -106310723 - MER2 DNA MER2_type -11 334 166 3 914 463 186 165 0 chr6 43206362 43206459 -106310578 - PB1D9 SINE Alu -6 114 2 3 914 241 47 23 23 chr6 43207142 43207186 -106309851 + (TTTTG)n Simple_repeat Simple_repeat 5 48 0 3 914 830 314 43 9 chr6 43207633 43207961 -106309076 - MER2 DNA MER2_type -3 342 4 3 914 1388 67 17 0 chr6 43208294 43208472 -106308565 + B2_Mm2 SINE B2 1 181 -14 3 914 762 264 0 73 chr6 43208851 43209043 -106307994 + B3A SINE B2 5 182 -16 3 914 21 36 0 0 chr6 43209048 43209076 -106307961 + AT_rich Low_complexity Low_complexity 1 28 0 3 914 1087 114 18 6 chr6 43209348 43209515 -106307522 - B2_Mm2 SINE B2 0 195 27 3 914 260 159 24 10 chr6 43209552 43209638 -106307399 - L1_Mus4 LINE L1 -8 6630 6542 3 914 180 0 0 0 chr6 43209919 43209939 -106307098 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 3 914 225 0 0 0 chr6 43210120 43210145 -106306892 + (TGG)n Simple_repeat Simple_repeat 2 26 0 3 914 818 263 84 95 chr6 43210418 43210595 -106306442 - L1MA4 LINE L1 -373 5927 5769 3 914 658 236 201 0 chr6 43210595 43210769 -106306268 - B3 SINE B2 -6 210 2 3 914 818 263 84 95 chr6 43210769 43211045 -106305992 - L1MA4 LINE L1 -532 5768 5479 3 914 317 329 48 52 chr6 43211083 43211333 -106305704 + L1M2 LINE L1 5000 5248 -895 3 914 484 291 10 62 chr6 43211350 43211559 -106305478 - L1MA4 LINE L1 -1153 4990 4793 3 914 182 370 81 34 chr6 43211776 43212011 -106305026 + L2 LINE L2 2766 3011 -408 3 914 3625 101 55 9 chr6 43213010 43213560 -106303477 + MT2B2 LTR ERVL 7 581 -3 3 914 213 336 26 78 chr6 43213676 43213792 -106303245 - MIRb SINE MIR -156 112 3 3 914 22 35 0 0 chr6 43213891 43213920 -106303117 + AT_rich Low_complexity Low_complexity 1 29 0 3 914 396 0 0 0 chr6 43214940 43214984 -106302053 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 914 207 287 11 22 chr6 43215120 43215209 -106301828 + GA-rich Low_complexity Low_complexity 5 92 0 3 914 32 81 0 0 chr6 43215617 43215691 -106301346 + GC_rich Low_complexity Low_complexity 1 74 0 3 914 439 186 10 10 chr6 43218211 43218314 -106298723 + CT-rich Low_complexity Low_complexity 1 103 0 3 914 396 312 42 104 chr6 43218314 43218344 -106298693 - B4A SINE B4 -46 246 160 3 914 681 248 15 0 chr6 43218344 43218477 -106298560 - B1_Mur4 SINE Alu -7 143 9 3 914 396 312 42 104 chr6 43218477 43218507 -106298530 - B4A SINE B4 -46 159 66 3 914 180 77 0 0 chr6 43218905 43218931 -106298106 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 914 244 301 124 22 chr6 43219270 43219441 -106297596 - MIRb SINE MIR -3 265 69 3 914 195 262 0 0 chr6 43219682 43219724 -106297313 - L4 LINE RTE -293 1736 1695 3 914 216 247 217 19 chr6 43220035 43220196 -106296841 - L2a LINE L2 -15 3411 3219 3 914 1196 190 0 13 chr6 43220509 43220733 -106296304 + URR1B DNA MER1_type 5 225 0 3 914 650 340 98 23 chr6 43221547 43221812 -106295225 - B4A SINE B4 0 292 8 3 914 729 264 74 11 chr6 43221882 43222058 -106294979 + B3 SINE B2 3 189 -27 3 914 35 24 0 0 chr6 43222061 43222103 -106294934 + AT_rich Low_complexity Low_complexity 1 42 0 3 914 195 329 101 20 chr6 43228543 43228692 -106288345 + L2 LINE L2 2454 2614 -805 3 914 1198 134 44 40 chr6 43232396 43232449 -106284588 + URR1A DNA MER1_type 1 56 -170 3 914 3346 73 53 2 chr6 43232449 43232902 -106284135 - L1_Mus3 LINE L1 -4 6634 6159 3 914 1198 134 44 40 chr6 43232902 43233073 -106283964 + URR1A DNA MER1_type 57 226 0 3 914 768 299 103 28 chr6 43236435 43236871 -106280166 + RMER5 LTR ERV1 55 523 -11 3 914 322 239 22 0 chr6 43237199 43237291 -106279746 + T-rich Low_complexity Low_complexity 6 99 0 3 914 568 211 62 0 chr6 43237294 43237422 -106279615 - B1_Mur1 SINE Alu -1 148 13 3 914 452 306 198 27 chr6 43237702 43238031 -106279006 - MLT1C LTR MaLR -6 461 77 3 914 1679 128 134 3 chr6 43238029 43238342 -106278695 - ORR1B2 LTR MaLR -13 354 1 3 914 185 320 26 0 chr6 43239146 43239224 -106277813 + L3 LINE CR1 4397 4476 -13 3 914 4337 36 10 0 chr6 43239534 43240032 -106277005 - RLTR1C LTR ERV1 0 503 1 3 914 38 22 0 0 chr6 43240535 43240580 -106276457 + AT_rich Low_complexity Low_complexity 1 45 0 3 914 206 222 0 0 chr6 43243128 43243173 -106273864 - MIR SINE MIR -91 117 73 3 914 228 234 0 0 chr6 43243497 43243544 -106273493 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 914 913 244 70 0 chr6 43243715 43243944 -106273093 - B4A SINE B4 -41 251 7 3 914 844 169 219 6 chr6 43245107 43245285 -106271752 - B3 SINE B2 0 216 1 3 914 441 195 412 6 chr6 43247852 43248012 -106269025 + URR1B DNA MER1_type 1 225 0 3 914 837 183 50 98 chr6 43248188 43248485 -106268552 - RLTRETN_Mm LTR ERVK 0 322 40 3 914 906 292 72 25 chr6 43248584 43248984 -106268053 + L1_Rod LINE L1 5411 5829 -18 3 914 644 113 19 0 chr6 43249950 43250056 -106266981 + B2_Mm2 SINE B2 1 108 -87 3 914 241 195 52 0 chr6 43250069 43250146 -106266891 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 914 839 308 93 3 chr6 43250976 43251286 -106265751 - MER2 DNA MER2_type -6 339 2 3 915 1367 170 0 9 chr6 43257838 43258064 -106258973 - URR1B DNA MER1_type -1 224 1 3 915 215 228 0 50 chr6 43259027 43259087 -106257950 + B4A SINE B4 87 143 -149 3 915 601 60 250 0 chr6 43259042 43259142 -106257895 + B1_Mm SINE Alu 14 138 -9 3 915 315 0 0 0 chr6 43259142 43259177 -106257860 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 915 245 229 134 142 chr6 43260483 43260610 -106256427 + RSINE1 SINE B4 4 129 -36 3 915 22 35 0 0 chr6 43261812 43261841 -106255196 + AT_rich Low_complexity Low_complexity 1 29 0 3 915 450 0 0 0 chr6 43262367 43262417 -106254620 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 915 263 161 0 18 chr6 43262424 43262481 -106254556 + CT-rich Low_complexity Low_complexity 2 57 0 3 915 189 0 0 0 chr6 43262655 43262676 -106254361 + (A)n Simple_repeat Simple_repeat 1 21 0 3 915 196 287 158 22 chr6 43263745 43263884 -106253153 - MIR SINE MIR -104 158 1 3 915 313 311 107 0 chr6 43263996 43264118 -106252919 + L1MD2 LINE L1 6010 6144 -215 3 915 301 295 90 0 chr6 43264160 43264282 -106252755 + L1MD2 LINE L1 6212 6344 -15 3 915 533 301 13 38 chr6 43264501 43264660 -106252377 - RSINE1 SINE B4 -8 157 3 3 915 272 362 26 32 chr6 43264672 43264826 -106252211 - RSINE1 SINE B4 -6 159 7 3 915 333 299 9 9 chr6 43266000 43266108 -106250929 - PB1D10 SINE Alu 0 117 10 3 915 272 211 8 0 chr6 43266277 43266343 -106250694 - PB1D7 SINE Alu 0 149 67 3 915 261 0 0 0 chr6 43266638 43266667 -106250370 + (TTTC)n Simple_repeat Simple_repeat 1 29 0 3 915 825 162 5 27 chr6 43266667 43266851 -106250186 + CT-rich Low_complexity Low_complexity 1 180 0 3 915 941 94 65 0 chr6 43266855 43266993 -106250044 - B1_Mus1 SINE Alu 0 148 2 3 915 244 349 10 20 chr6 43267201 43267397 -106249640 - L1MDa LINE L1 -4389 2229 2036 3 915 311 303 98 11 chr6 43267515 43268045 -106248992 - L1MDa LINE L1 -4765 1868 1229 3 915 311 299 74 7 chr6 43268057 43268192 -106248845 - L1MDa LINE L1 -5471 1147 1004 3 915 306 0 0 0 chr6 43268226 43268260 -106248777 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 915 509 324 37 28 chr6 43268601 43268817 -106248220 + MER2 DNA MER2_type 125 342 -3 3 915 252 111 0 0 chr6 43268820 43268865 -106248172 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 915 305 338 120 82 chr6 43268865 43269118 -106247919 - L1MDa LINE L1 -5666 952 671 3 915 225 0 0 0 chr6 43269118 43269143 -106247894 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 915 279 0 0 0 chr6 43269143 43269173 -106247864 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 915 305 338 120 82 chr6 43269173 43269518 -106247519 - L1MDa LINE L1 -5948 670 331 3 915 1029 194 55 15 chr6 43269710 43269909 -106247128 - B3 SINE B2 -5 211 5 3 915 39799 35 0 0 chr6 43270574 43275987 -106241050 - L1Md_T LINE L1 0 6582 1170 3 915 4812 157 24 30 chr6 43275993 43276919 -106240118 - L1Md_T LINE L1 -5411 1205 286 3 915 467 260 196 24 chr6 43277096 43277305 -106239732 - Lx8 LINE L1 -2 7471 7227 3 915 6118 70 3 8 chr6 43277355 43278128 -106238909 - L1Md_F2 LINE L1 -1 6581 5813 3 915 3646 56 2 5 chr6 43278128 43278568 -106238469 + L1Md_F2 LINE L1 5363 5803 -80 3 915 462 114 0 0 chr6 43278895 43278965 -106238072 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 915 225 207 24 12 chr6 43279007 43279090 -106237947 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 915 246 271 2 0 chr6 43279181 43279241 -106237796 - MLT1J-int LTR MaLR -172 1237 1168 3 915 185 283 43 0 chr6 43279546 43279592 -106237445 - MIRm SINE MIR -33 243 196 3 915 4172 143 47 75 chr6 43279760 43280616 -106236421 + RMER12 LTR ERVK 60 891 -431 3 915 603 159 0 0 chr6 43280616 43280748 -106236289 + GA-rich Low_complexity Low_complexity 2 133 0 3 915 563 149 9 0 chr6 43280793 43280900 -106236137 + CT-rich Low_complexity Low_complexity 2 109 0 3 915 784 169 61 22 chr6 43280910 43281091 -106235946 + RMER12 LTR ERVK 1135 1322 0 3 915 3162 86 14 19 chr6 43281177 43281603 -106235434 - L1_Mus3 LINE L1 -3 6635 6212 3 915 408 252 56 129 chr6 43281968 43282146 -106234891 + RSINE1 SINE B4 1 165 0 4 915 235 292 41 14 chr6 43284735 43284808 -106232229 - Charlie12 DNA MER1_type -2791 82 8 4 915 840 215 16 33 chr6 43285150 43285333 -106231704 + B3A SINE B2 1 180 -18 4 915 784 43 0 0 chr6 43286250 43286343 -106230694 + 4.5SRNA scRNA scRNA 1 93 -1 4 915 1634 52 5 0 chr6 43286343 43286534 -106230503 + B2_Mm1t SINE B2 2 193 0 4 915 182 298 35 17 chr6 43287299 43287357 -106229680 + L3 LINE CR1 3497 3555 -934 4 915 237 317 205 15 chr6 43288247 43288452 -106228585 - L2 LINE L2 -367 3052 2809 4 915 674 224 59 94 chr6 43288625 43288827 -106228210 + ORR1C2 LTR MaLR 190 384 0 4 915 205 317 73 107 chr6 43288975 43289208 -106227829 - L2 LINE L2 -1746 1673 1449 4 915 21 36 0 0 chr6 43290370 43290398 -106226639 + AT_rich Low_complexity Low_complexity 1 28 0 4 915 399 290 17 86 chr6 43291075 43291219 -106225818 - PB1D10 SINE Alu -3 145 14 4 915 477 243 70 8 chr6 43291110 43291240 -106225797 - ID_B1 SINE B4 -69 223 72 4 915 374 299 0 9 chr6 43292637 43292745 -106224292 + MER117 DNA MER1_type 56 162 -35 4 915 281 89 22 0 chr6 43293760 43293805 -106223232 + GSAT_MM Satellite Satellite 25 70 -401 4 915 194 282 0 53 chr6 43295270 43295345 -106221692 + L3 LINE CR1 4199 4269 -220 4 915 870 211 22 22 chr6 43295760 43295939 -106221098 - B2_Mm2 SINE B2 -16 179 1 4 915 388 266 13 0 chr6 43296567 43296646 -106220391 - ID4 SINE ID -3 80 1 4 915 261 83 0 0 chr6 43298216 43298252 -106218785 + (TAA)n Simple_repeat Simple_repeat 2 37 0 4 915 561 162 81 0 chr6 43298461 43298572 -106218465 - B1_Mus2 SINE Alu 0 147 28 4 915 899 206 52 75 chr6 43299040 43299345 -106217692 + Lx8 LINE L1 6761 7058 -415 4 915 253 282 129 84 chr6 43300668 43300846 -106216191 + MIRc SINE MIR 28 213 -55 4 915 627 341 91 7 chr6 43301098 43301396 -106215641 + MER2 DNA MER2_type 20 342 -3 4 915 7364 67 16 5 chr6 43301538 43302793 -106214244 - L1_Mus2 LINE L1 -54 6512 5235 4 915 423 0 0 0 chr6 43302793 43302840 -106214197 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 915 7309 102 11 8 chr6 43302840 43303237 -106213800 - L1_Mus2 LINE L1 -649 5234 4843 4 915 277 266 221 63 chr6 43303726 43304340 -106212697 + L1MC4 LINE L1 6859 7569 -473 4 915 7790 85 8 2 chr6 43306724 43307768 -106209269 - L1_Mus3 LINE L1 -2 6636 5587 4 915 698 213 33 10 chr6 43307843 43308021 -106209016 + B3 SINE B2 1 189 -6 4 915 224 323 0 0 chr6 43308855 43308920 -106208117 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 915 905 170 0 7 chr6 43308931 43309073 -106207964 - B1_Mur3 SINE Alu -8 141 1 4 915 2185 219 35 8 chr6 43309885 43310365 -106206672 + RMER5 LTR ERV1 42 534 0 4 915 2942 188 21 69 chr6 43310932 43311543 -106205494 + Lx5 LINE L1 6469 7050 0 4 915 277 183 32 48 chr6 43312409 43312472 -106204565 + RMER5 LTR ERV1 175 236 -298 4 915 783 265 193 10 chr6 43313132 43313437 -106203600 + MER89 LTR ERV1 119 479 -80 4 915 189 0 0 0 chr6 43313858 43313879 -106203158 + (ACTCG)n Simple_repeat Simple_repeat 5 25 0 4 915 656 96 0 9 chr6 43314806 43314922 -106202115 + (GA)n Simple_repeat Simple_repeat 2 116 0 4 915 243 196 20 0 chr6 43315722 43315773 -106201264 + L1MB7 LINE L1 6121 6172 -12 4 915 531 0 0 0 chr6 43315918 43315977 -106201060 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 4 915 231 36 0 0 chr6 43317006 43317034 -106200003 + (CCAA)n Simple_repeat Simple_repeat 3 30 0 4 915 641 257 105 46 chr6 43317286 43317597 -106199440 - L1MA7 LINE L1 -32 6259 5928 4 915 1246 264 72 3 chr6 43317602 43317936 -106199101 - ORR1E LTR MaLR -2 357 1 4 915 297 304 47 7 chr6 43318029 43318178 -106198859 - L1M2 LINE L1 -3404 2739 2585 4 915 431 221 47 2 chr6 43318862 43318973 -106198064 + PB1D7 SINE Alu 6 125 -2 4 915 798 47 0 0 chr6 43319738 43319845 -106197192 + (TC)n Simple_repeat Simple_repeat 1 107 0 4 915 1451 236 70 12 chr6 43320204 43320613 -106196424 + RLTR11A2 LTR ERVK 20 452 -75 4 915 1886 244 59 98 chr6 43320613 43321526 -106195511 + RMER13B LTR ERVK 1 843 -65 4 915 380 155 99 0 chr6 43321574 43321645 -106195392 + RLTR11A2 LTR ERVK 447 524 -3 4 915 397 266 161 0 chr6 43322185 43322328 -106194709 + MER5A1 DNA MER1_type 1 166 0 4 915 279 0 0 0 chr6 43326530 43326561 -106190476 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 915 21 36 0 0 chr6 43326618 43326646 -106190391 + AT_rich Low_complexity Low_complexity 1 28 0 4 915 21 0 0 0 chr6 43327004 43327025 -106190012 + AT_rich Low_complexity Low_complexity 1 21 0 4 915 843 284 42 46 chr6 43327997 43328281 -106188756 + ORR1E LTR MaLR 66 348 -11 4 915 359 281 86 36 chr6 43328906 43329046 -106187991 + B1F SINE Alu 1 147 -2 4 915 827 197 0 72 chr6 43329050 43329203 -106187834 + B1_Mus1 SINE Alu 1 142 -6 4 915 204 111 0 0 chr6 43329213 43329249 -106187788 + (CAAAC)n Simple_repeat Simple_repeat 3 38 0 4 915 479 17 17 0 chr6 43329306 43329366 -106187671 + (CAAG)n Simple_repeat Simple_repeat 3 63 0 4 915 339 292 54 13 chr6 43329505 43329654 -106187383 + L1MB5 LINE L1 4721 4875 -1265 4 915 292 225 92 0 chr6 43329873 43330034 -106187003 + L1MB5 LINE L1 5185 5360 -804 4 915 367 200 84 78 chr6 43330469 43330605 -106186432 + L1MB5 LINE L1 5741 5878 -422 4 915 1308 199 152 21 chr6 43332336 43332665 -106184372 + ORR1D1 LTR MaLR 3 374 0 4 915 1565 107 145 4 chr6 43333124 43333386 -106183651 + L1_Mus3 LINE L1 6335 6633 -5 4 915 22 56 0 0 chr6 43333478 43333514 -106183523 + AT_rich Low_complexity Low_complexity 1 36 0 4 915 670 303 87 19 chr6 43333961 43334227 -106182810 + B4 SINE B4 5 288 -4 4 915 599 171 20 20 chr6 43334275 43334424 -106182613 + CT-rich Low_complexity Low_complexity 3 151 0 4 915 448 285 73 54 chr6 43335786 43336247 -106180790 + RLTR12B LTR ERVK 2 334 -25 4 915 225 0 0 0 chr6 43336263 43336288 -106180749 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 4 915 1459 49 43 0 chr6 43338092 43338276 -106178761 - B2_Mm2 SINE B2 -2 193 2 4 915 21 0 0 0 chr6 43338428 43338449 -106178588 + AT_rich Low_complexity Low_complexity 1 21 0 4 915 260 366 140 14 chr6 43338466 43338815 -106178222 + L3 LINE CR1 3679 4071 -418 4 915 180 0 0 0 chr6 43339371 43339391 -106177646 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 915 700 275 35 5 chr6 43339875 43340076 -106176961 - B3 SINE B2 -8 208 2 4 915 1277 189 61 104 chr6 43340395 43340855 -106176182 - RMER10A LTR ERVL 0 442 3 4 915 357 140 0 10 chr6 43340912 43341015 -106176022 - B2_Mm2 SINE B2 -3 192 47 4 915 1087 117 41 0 chr6 43341039 43341210 -106175827 - B2_Mm1t SINE B2 -14 179 2 4 915 211 136 23 0 chr6 43341259 43341327 -106175710 + A-rich Low_complexity Low_complexity 1 69 0 4 915 240 304 14 0 chr6 43341833 43341902 -106175135 + CT-rich Low_complexity Low_complexity 3 72 0 4 915 24 0 0 0 chr6 43342064 43342088 -106174949 + AT_rich Low_complexity Low_complexity 1 24 0 4 915 1332 302 51 34 chr6 43342088 43342156 -106174881 - Lx8 LINE L1 -35 7438 7355 4 915 2378 192 0 12 chr6 43342156 43342582 -106174455 + MTC LTR MaLR 1 421 0 4 915 1332 302 51 34 chr6 43342582 43343102 -106173935 - Lx8 LINE L1 -119 7354 6840 4 915 369 322 47 0 chr6 43343109 43343258 -106173779 + Lx7 LINE L1 6658 6813 -883 4 915 402 132 0 0 chr6 43344532 43344608 -106172429 + (TA)n Simple_repeat Simple_repeat 1 76 0 4 915 201 175 0 0 chr6 43345556 43345596 -106171441 + (CATA)n Simple_repeat Simple_repeat 1 40 0 4 915 1219 189 126 7 chr6 43347332 43347604 -106169433 + ORR1B1 LTR MaLR 1 305 -89 4 915 2126 138 70 61 chr6 43347604 43348030 -106169007 - RLTR23 LTR ERV1 0 430 1 4 915 553 138 11 0 chr6 43348030 43348113 -106168924 + ORR1B1 LTR MaLR 276 359 -8 4 915 375 23 0 0 chr6 43348535 43348579 -106168458 + (TCCC)n Simple_repeat Simple_repeat 4 47 0 4 915 1316 134 22 0 chr6 43349463 43349686 -106167351 + Lx2 LINE L1 6770 6997 0 4 915 276 250 158 55 chr6 43349928 43350055 -106166982 - MTEb LTR MaLR 0 379 240 4 915 201 147 0 0 chr6 43350072 43350106 -106166931 + (T)n Simple_repeat Simple_repeat 1 34 0 4 915 2152 58 0 11 chr6 43350109 43350386 -106166651 - L1_Mus1 LINE L1 0 6567 6294 4 915 196 261 86 14 chr6 43352536 43352606 -106164431 + L2 LINE L2 2792 2866 -553 4 915 396 0 0 0 chr6 43352925 43352969 -106164068 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 915 756 182 7 0 chr6 43355344 43355487 -106161550 + URR1A DNA MER1_type 81 224 -2 4 915 350 136 12 0 chr6 43355816 43355897 -106161140 + (CAAA)n Simple_repeat Simple_repeat 2 83 0 4 915 456 19 0 0 chr6 43356126 43356179 -106160858 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 915 309 304 72 104 chr6 43356296 43356421 -106160616 - B4A SINE B4 -151 141 21 4 915 3931 181 42 21 chr6 43356720 43357670 -106159367 + Lx5 LINE L1 3014 3983 -1894 4 915 1966 144 141 5 chr6 43357660 43358080 -106158957 + Lx5 LINE L1 5203 5679 -198 4 915 27 49 0 0 chr6 43358103 43358144 -106158893 + AT_rich Low_complexity Low_complexity 1 41 0 4 915 684 196 7 55 chr6 43358150 43358296 -106158741 - B2_Mm2 SINE B2 -55 140 2 4 915 22 35 0 0 chr6 43358304 43358333 -106158704 + AT_rich Low_complexity Low_complexity 1 29 0 4 915 2505 153 24 4 chr6 43358340 43358805 -106158232 + Lx5 LINE L1 5677 6150 -900 4 915 441 0 0 0 chr6 43359768 43359817 -106157220 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 915 270 95 0 0 chr6 43360983 43361025 -106156012 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 4 915 312 336 115 0 chr6 43361045 43361158 -106155879 + RSINE1 SINE B4 12 137 -28 4 915 351 0 0 0 chr6 43361161 43361200 -106155837 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 915 215 321 45 0 chr6 43362775 43362890 -106154147 + MIR SINE MIR 84 211 -57 4 915 357 109 0 0 chr6 43363548 43363603 -106153434 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 915 10353 89 50 17 chr6 43363649 43365965 -106151072 + L1VL4 LINE L1 194 2593 -966 5 915 494 224 114 8 chr6 43365993 43366164 -106150873 + MTD LTR MaLR 148 366 -53 5 915 378 354 57 0 chr6 43367173 43367348 -106149689 + MLT1D LTR MaLR 31 215 -290 5 915 661 297 56 24 chr6 43367617 43367869 -106149168 + RMER15 LTR ERVL 276 535 -40 5 915 475 301 113 15 chr6 43367879 43368106 -106148931 + L1M4 LINE L1 4047 4293 -1853 5 915 1284 205 186 73 chr6 43368106 43368585 -106148452 + MT2A LTR ERVL 1 533 0 5 915 475 301 113 15 chr6 43368585 43368880 -106148157 + L1M4 LINE L1 4294 4620 -1526 5 915 244 62 157 71 chr6 43368958 43369028 -106148009 + L1M5 LINE L1 5018 5093 -1053 5 915 234 200 16 32 chr6 43369070 43369132 -106147905 + (TATATG)n Simple_repeat Simple_repeat 1 61 0 5 915 249 248 117 61 chr6 43369427 43369590 -106147447 - LTR37A LTR ERV1 -50 376 205 5 915 21 57 0 0 chr6 43369861 43369896 -106147141 + AT_rich Low_complexity Low_complexity 1 35 0 5 915 890 183 6 6 chr6 43369901 43370082 -106146955 - Lx7 LINE L1 0 7696 7516 5 915 995 234 37 19 chr6 43370561 43370831 -106146206 - Lx7 LINE L1 -397 7299 7025 5 915 3453 214 11 11 chr6 43370833 43371829 -106145208 - Lx7 LINE L1 -1312 6384 5378 5 915 972 0 0 0 chr6 43372904 43373012 -106144025 + (CAAAG)n Simple_repeat Simple_repeat 2 109 0 5 915 294 255 44 45 chr6 43373177 43373394 -106143643 + L1M4 LINE L1 5305 5534 -646 5 915 1369 205 184 6 chr6 43374206 43374554 -106142483 + MTD LTR MaLR 2 411 -8 5 915 543 306 16 0 chr6 43374743 43374867 -106142170 + MTD LTR MaLR 84 209 -210 5 915 194 116 23 0 chr6 43377683 43377726 -106139311 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 915 605 38 12 0 chr6 43378017 43378097 -106138940 + (CA)n Simple_repeat Simple_repeat 1 81 0 5 915 277 244 37 0 chr6 43379833 43379915 -106137122 - RMER1C Other Other -54 1288 1204 5 915 231 114 0 0 chr6 43379918 43379953 -106137084 + (GGA)n Simple_repeat Simple_repeat 2 36 0 5 915 2374 228 37 224 chr6 43379995 43381416 -106135621 - RMER1C Other Other -150 1192 37 5 915 631 98 41 0 chr6 43382525 43382648 -106134389 + (TC)n Simple_repeat Simple_repeat 1 128 0 5 915 3237 81 7 0 chr6 43383262 43383707 -106133330 + Lx3_Mus LINE L1 6428 6875 -134 5 915 389 354 109 59 chr6 43383870 43384291 -106132746 + L2 LINE L2 1867 2308 -1111 5 915 256 276 69 0 chr6 43384355 43384442 -106132595 + L2 LINE L2 2466 2558 -861 5 916 408 370 60 20 chr6 43385106 43385354 -106131683 + MTD LTR MaLR 19 276 -143 5 916 393 321 191 58 chr6 43385885 43386335 -106130702 + MLT1F LTR MaLR 1 510 -38 5 916 298 360 99 29 chr6 43389649 43389921 -106127116 - B4A SINE B4 0 292 2 5 916 277 140 0 0 chr6 43390157 43390207 -106126830 + RMER19B LTR ERVK 1 50 -852 5 916 28 0 0 0 chr6 43390831 43390859 -106126178 + AT_rich Low_complexity Low_complexity 1 28 0 5 916 1043 250 283 43 chr6 43392332 43392795 -106124242 + RLTR17 LTR ERVK 104 619 -73 5 916 1756 213 86 94 chr6 43392853 43393282 -106123755 - Lx9 LINE L1 -8 7636 7239 5 916 1988 196 45 2 chr6 43393282 43393682 -106123355 - MTC LTR MaLR 0 421 5 5 916 1756 213 86 94 chr6 43393682 43393847 -106123190 - Lx9 LINE L1 -406 7238 7049 5 916 663 286 132 118 chr6 43396707 43397435 -106119602 + L1MC3 LINE L1 6152 6889 -896 5 916 232 289 0 26 chr6 43397584 43397662 -106119375 + L1MC3 LINE L1 7131 7206 -579 5 916 508 358 74 0 chr6 43397797 43397987 -106119050 + B4A SINE B4 85 288 -4 5 916 239 254 0 66 chr6 43397988 43398064 -106118973 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 5 916 23 54 0 0 chr6 43398337 43398374 -106118663 + AT_rich Low_complexity Low_complexity 1 37 0 5 916 270 240 13 26 chr6 43398526 43398603 -106118434 + L1MC LINE L1 5389 5464 -2418 5 916 355 306 120 44 chr6 43398842 43399194 -106117843 + L1MC LINE L1 4798 5176 -970 5 916 1625 234 81 8 chr6 43399503 43399886 -106117151 - MTD LTR MaLR -6 413 3 5 916 222 62 0 0 chr6 43400101 43400133 -106116904 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 916 45 75 0 0 chr6 43400803 43400897 -106116140 + AT_rich Low_complexity Low_complexity 1 94 0 5 916 274 319 0 0 chr6 43401042 43401114 -106115923 + PB1D10 SINE Alu 29 100 -17 5 916 701 300 82 63 chr6 43401323 43401593 -106115444 - B4 SINE B4 -11 281 7 5 916 409 337 43 16 chr6 43401623 43401807 -106115230 - B3A SINE B2 -6 192 4 5 916 23 54 0 0 chr6 43402179 43402216 -106114821 + AT_rich Low_complexity Low_complexity 1 37 0 5 916 325 278 54 27 chr6 43402306 43402417 -106114620 - PB1D10 SINE Alu -3 114 1 5 916 375 23 0 0 chr6 43402492 43402536 -106114501 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 916 508 270 45 66 chr6 43402558 43402756 -106114281 - B3A SINE B2 -4 194 1 5 916 180 200 0 0 chr6 43403413 43403453 -106113584 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5 916 441 256 43 14 chr6 43404340 43404479 -106112558 + RSINE1 SINE B4 9 151 -14 5 916 31 0 0 0 chr6 43404783 43404814 -106112223 + AT_rich Low_complexity Low_complexity 1 31 0 5 916 1456 184 13 16 chr6 43404894 43405208 -106111829 - Lx7 LINE L1 0 7696 7384 5 916 515 141 0 11 chr6 43405209 43405302 -106111735 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 916 247 167 33 0 chr6 43405317 43405377 -106111660 + A-rich Low_complexity Low_complexity 3 64 0 5 916 1762 205 28 3 chr6 43405408 43405760 -106111277 - Lx7 LINE L1 -356 7340 6980 5 916 1706 235 34 74 chr6 43405767 43406446 -106110591 - Lx5 LINE L1 -2 7048 6450 5 916 2802 139 44 2 chr6 43406457 43406961 -106110076 - L1_Mur2 LINE L1 -1203 4674 4150 5 916 2417 119 42 37 chr6 43406954 43407408 -106109629 - L1_Mur3 LINE L1 -1197 4683 4228 5 916 255 79 0 0 chr6 43408039 43408077 -106108960 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 916 1322 97 16 0 chr6 43408921 43409106 -106107931 + B2_Mm2 SINE B2 2 189 -6 5 916 461 287 23 8 chr6 43409243 43409373 -106107664 + MLT1A0 LTR MaLR 234 365 0 5 916 1366 201 162 19 chr6 43411358 43411723 -106105314 + MTD LTR MaLR 1 417 -2 5 916 27 0 0 0 chr6 43411740 43411767 -106105270 + AT_rich Low_complexity Low_complexity 1 27 0 5 916 742 292 100 16 chr6 43411889 43412320 -106104717 - L1MA5 LINE L1 -7 6293 5827 5 916 260 311 0 0 chr6 43414327 43414388 -106102649 + ID4 SINE ID 12 72 -11 5 916 212 282 0 27 chr6 43414470 43414543 -106102494 + (CATATA)n Simple_repeat Simple_repeat 5 75 0 5 916 472 356 75 8 chr6 43416763 43417018 -106100019 + L1MEg LINE L1 839 1110 -4974 5 916 488 16 16 0 chr6 43418745 43418806 -106098231 + (TAA)n Simple_repeat Simple_repeat 2 63 0 5 916 241 241 68 57 chr6 43419274 43419362 -106097675 - MIRb SINE MIR -135 133 45 5 916 21 36 0 0 chr6 43419798 43419826 -106097211 + AT_rich Low_complexity Low_complexity 1 28 0 5 916 288 0 0 0 chr6 43419910 43419942 -106097095 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 916 297 0 0 0 chr6 43419942 43419974 -106097063 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 916 477 0 0 0 chr6 43421339 43421392 -106095645 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 916 302 214 54 0 chr6 43421451 43421507 -106095530 - B4A SINE B4 -20 272 214 5 916 931 254 22 6 chr6 43421523 43421725 -106095312 - B3 SINE B2 -6 210 5 5 916 565 274 126 47 chr6 43421725 43421939 -106095098 - B4A SINE B4 -58 234 4 5 916 2533 208 14 32 chr6 43422464 43423030 -106094007 + RLTR17 LTR ERVK 1 556 -136 5 916 324 293 51 8 chr6 43424479 43424596 -106092441 - MER94 DNA AcHobo 0 134 13 5 916 384 22 0 0 chr6 43425676 43425721 -106091316 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 916 309 306 121 37 chr6 43425879 43426069 -106090968 - MLT1A0 LTR MaLR 0 365 160 5 916 21 0 0 0 chr6 43426442 43426463 -106090574 + AT_rich Low_complexity Low_complexity 1 21 0 5 916 234 370 41 62 chr6 43427830 43428072 -106088965 + RLTR25A LTR ERVK 76 312 -791 5 916 258 291 61 74 chr6 43428875 43429038 -106087999 + RLTR25B LTR ERVK 856 1016 -12 5 916 800 82 289 13 chr6 43430361 43430510 -106086527 + B2_Mm2 SINE B2 2 191 -4 5 916 228 190 52 0 chr6 43431742 43431800 -106085237 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 5 916 23 0 0 0 chr6 43432062 43432085 -106084952 + AT_rich Low_complexity Low_complexity 1 23 0 5 916 258 287 163 11 chr6 43433685 43433949 -106083088 - L1MD3 LINE L1 -6 7989 7686 5 916 587 296 22 0 chr6 43435529 43435708 -106081329 - Tigger7 DNA MER2_type -159 2332 2150 5 916 470 384 28 38 chr6 43435735 43436025 -106081012 - Tigger7 DNA MER2_type -2203 288 2 5 916 362 290 0 18 chr6 43436112 43436221 -106080816 - B4A SINE B4 -2 290 184 5 916 269 270 13 26 chr6 43436243 43436319 -106080718 + MER34 LTR ERV1 443 517 -25 5 916 21 36 0 0 chr6 43438381 43438409 -106078628 + AT_rich Low_complexity Low_complexity 1 28 0 5 916 271 252 45 97 chr6 43440241 43440372 -106076665 + L2c LINE L2 3290 3426 0 5 916 29 47 0 0 chr6 43440400 43440443 -106076594 + AT_rich Low_complexity Low_complexity 1 43 0 5 916 2075 220 67 67 chr6 43440916 43441170 -106075867 + Lx9 LINE L1 6834 7084 -560 5 916 464 62 49 0 chr6 43441170 43441251 -106075786 + (CA)n Simple_repeat Simple_repeat 1 85 0 5 916 2075 220 67 67 chr6 43441251 43441594 -106075443 + Lx9 LINE L1 7085 7431 -213 5 916 328 324 9 0 chr6 43441656 43441767 -106075270 + Lx9 LINE L1 6560 6671 -973 5 916 673 148 0 15 chr6 43441866 43441876 -106075161 + (TA)n Simple_repeat Simple_repeat 2 11 0 5 916 248 0 31 0 chr6 43441876 43441908 -106075129 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 916 673 148 0 15 chr6 43441908 43442034 -106075003 + (TA)n Simple_repeat Simple_repeat 2 125 0 5 916 188 61 61 0 chr6 43443736 43443769 -106073268 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 916 206 209 0 0 chr6 43443777 43443820 -106073217 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 5 916 10868 112 27 9 chr6 43444493 43446723 -106070314 + L1VL4 LINE L1 403 2670 -889 5 916 182 227 68 0 chr6 43446744 43446788 -106070249 + L2a LINE L2 3330 3376 -50 5 916 6901 149 9 5 chr6 43447211 43448982 -106068055 + L1_Mus4 LINE L1 4583 6368 -268 5 916 2720 75 3 0 chr6 43448982 43449327 -106067710 - ORR1A1 LTR MaLR 0 346 1 6 916 6901 107 10 6 chr6 43449327 43449598 -106067439 + L1_Mus4 LINE L1 6369 6636 0 5 916 316 298 23 23 chr6 43449868 43450040 -106066997 + (CA)n Simple_repeat Simple_repeat 1 172 0 6 916 845 320 81 16 chr6 43450110 43450431 -106066606 + MLT1E2 LTR MaLR 277 618 -9 6 916 351 0 0 0 chr6 43450531 43450570 -106066467 + (TAA)n Simple_repeat Simple_repeat 3 41 0 6 916 1758 153 31 7 chr6 43450570 43450859 -106066178 + Lx3C LINE L1 6668 6963 -13 6 916 476 207 0 9 chr6 43450859 43450971 -106066066 + (TA)n Simple_repeat Simple_repeat 2 112 0 6 916 369 0 0 0 chr6 43451014 43451055 -106065982 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 916 333 0 0 0 chr6 43451055 43451091 -106065946 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 916 320 365 78 0 chr6 43451155 43451270 -106065767 + B3 SINE B2 67 190 -26 6 916 34 42 0 0 chr6 43452218 43452266 -106064771 + AT_rich Low_complexity Low_complexity 1 48 0 6 916 778 224 46 20 chr6 43452291 43452487 -106064550 - B3 SINE B2 -15 201 1 6 916 333 363 9 9 chr6 43452548 43452662 -106064375 + ORR1E LTR MaLR 22 135 -224 6 916 635 294 98 0 chr6 43452997 43453191 -106063846 - MER58B DNA MER1_type -123 218 6 6 916 362 310 152 18 chr6 43454889 43455283 -106061754 - L1MA6 LINE L1 -124 6176 5730 6 916 6528 107 12 7 chr6 43455970 43457511 -106059526 + L1_Mus3 LINE L1 4992 6531 -107 6 916 729 163 0 31 chr6 43457513 43457640 -106059397 + RLTR15 LTR ERVK 237 359 0 6 916 1310 176 42 4 chr6 43457758 43457997 -106059040 + RMER6A LTR ERVK 3 250 -506 6 916 1526 138 199 106 chr6 43458002 43458154 -106058883 + L1_Mur1 LINE L1 4945 5090 -796 6 916 3474 81 2 2 chr6 43458154 43458610 -106058427 + L1_Mus2 LINE L1 6111 6566 0 6 916 1526 138 199 106 chr6 43458610 43458959 -106058078 + L1_Mur1 LINE L1 5091 5493 -393 6 916 33476 60 3 22 chr6 43458960 43463919 -106053118 + Lx3C LINE L1 625 5586 -297 6 916 8137 45 2 0 chr6 43463919 43464913 -106052124 + L1Md_F2 LINE L1 5587 6582 0 6 916 33476 125 39 38 chr6 43464913 43466397 -106050640 + Lx3C LINE L1 5587 6968 -8 6 916 195 42 0 0 chr6 43466427 43466451 -106050586 + (GGA)n Simple_repeat Simple_repeat 3 26 0 6 916 1944 180 88 18 chr6 43466453 43466895 -106050142 + RMER6A LTR ERVK 284 756 0 6 916 240 367 109 33 chr6 43467114 43467297 -106049740 + MIR SINE MIR 9 205 -57 6 916 698 223 62 10 chr6 43467457 43467665 -106049372 - L1MC1 LINE L1 -96 6237 6019 6 916 24 53 0 0 chr6 43468839 43468877 -106048160 + AT_rich Low_complexity Low_complexity 1 38 0 6 916 274 23 23 23 chr6 43471013 43471057 -106045980 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 916 660 101 11 0 chr6 43471693 43471797 -106045240 + B1_Mur4 SINE Alu 43 148 -2 6 916 230 200 0 39 chr6 43472394 43472446 -106044591 + CT-rich Low_complexity Low_complexity 2 51 0 6 916 414 0 0 0 chr6 43472561 43472607 -106044430 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 916 514 228 75 21 chr6 43472673 43472852 -106044185 - B3 SINE B2 -7 188 1 6 916 46 74 0 0 chr6 43473666 43473761 -106043276 + AT_rich Low_complexity Low_complexity 1 95 0 6 916 333 0 0 0 chr6 43474223 43474260 -106042777 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 916 207 105 0 26 chr6 43474554 43474593 -106042444 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 916 714 105 0 0 chr6 43474652 43474757 -106042280 + (TTTC)n Simple_repeat Simple_repeat 3 107 0 6 916 886 89 43 29 chr6 43474766 43474905 -106042132 - B1_Mus1 SINE Alu -6 142 2 6 916 460 296 57 41 chr6 43475074 43475268 -106041769 - LTR68 LTR ERV1 0 740 544 6 916 250 303 75 34 chr6 43475318 43475465 -106041572 - LTR68 LTR ERV1 -321 419 267 6 916 844 142 16 8 chr6 43477687 43477877 -106039160 + Lx3A LINE L1 6734 6921 -52 6 916 381 22 0 0 chr6 43477880 43477926 -106039111 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 6 916 207 262 0 67 chr6 43477941 43477985 -106039052 + polypurine Low_complexity Low_complexity 3 44 0 6 916 767 197 13 20 chr6 43477985 43478135 -106038902 + B1_Mur3 SINE Alu 1 149 0 6 916 207 262 0 67 chr6 43478135 43478180 -106038857 + polypurine Low_complexity Low_complexity 45 86 0 6 916 452 274 156 10 chr6 43479040 43479232 -106037805 - MER58A DNA MER1_type -3 221 2 6 916 193 219 73 0 chr6 43479453 43479494 -106037543 - L3 LINE CR1 -2317 2172 2129 6 916 202 312 0 0 chr6 43479507 43479571 -106037466 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 916 495 306 80 44 chr6 43479591 43479817 -106037220 - B4A SINE B4 -18 274 41 6 916 339 164 0 0 chr6 43481363 43481424 -106035613 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 916 3563 123 43 23 chr6 43481697 43482304 -106034733 + Lx2A LINE L1 6314 6932 -76 6 916 263 93 0 23 chr6 43482316 43482360 -106034677 + (GGAGA)n Simple_repeat Simple_repeat 2 44 0 6 916 859 289 82 35 chr6 43482417 43482758 -106034279 + MLT1A0 LTR MaLR 2 358 -7 6 916 947 169 21 37 chr6 43483864 43484054 -106032983 + B2_Mm2 SINE B2 1 187 -8 6 916 189 318 0 0 chr6 43484654 43484720 -106032317 + L2 LINE L2 2813 2878 -541 6 916 288 0 0 0 chr6 43484869 43484901 -106032136 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 916 420 353 134 25 chr6 43485261 43485499 -106031538 + MER21B LTR ERV1 22 285 -578 6 916 980 281 55 99 chr6 43485500 43485934 -106031103 - MTD LTR MaLR 0 419 5 6 916 4237 157 15 32 chr6 43485934 43486813 -106030224 - Lx2B LINE L1 -585 6415 5546 6 916 256 246 110 34 chr6 43486928 43487046 -106029991 + PB1 SINE Alu 1 127 0 6 916 236 282 25 13 chr6 43487053 43487132 -106029905 + ID SINE ID 3 82 -142 6 916 28 0 0 0 chr6 43487848 43487876 -106029161 + AT_rich Low_complexity Low_complexity 1 28 0 6 916 28 48 0 0 chr6 43487906 43487948 -106029089 + AT_rich Low_complexity Low_complexity 1 42 0 6 916 857 228 86 0 chr6 43487948 43488145 -106028892 + B3 SINE B2 2 215 -1 6 916 198 0 0 0 chr6 43488281 43488303 -106028734 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 916 383 332 31 9 chr6 43488666 43488894 -106028143 - L1_Mur3 LINE L1 -323 5557 5325 6 916 615 292 78 14 chr6 43488933 43489280 -106027757 + L1MA6 LINE L1 5568 5936 -364 6 916 407 68 17 0 chr6 43489359 43489418 -106027619 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 916 609 249 14 6 chr6 43489574 43489744 -106027293 - MTE2b LTR MaLR 0 379 208 6 916 300 276 28 19 chr6 43489877 43489984 -106027053 + RLTR11B LTR ERVK 284 391 -62 6 916 321 162 0 0 chr6 43490644 43490712 -106026325 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 916 340 200 0 0 chr6 43490713 43490778 -106026259 - Lx7 LINE L1 -382 7314 7250 6 916 2782 187 27 6 chr6 43490780 43491301 -106025736 + RMER5 LTR ERV1 1 532 -2 6 916 1566 249 3 36 chr6 43491301 43491692 -106025345 - Lx7 LINE L1 -443 7253 6876 6 916 9183 53 0 0 chr6 43492137 43493334 -106023703 + L1Md_F2 LINE L1 4390 5586 -297 6 916 8168 41 1 1 chr6 43493335 43494318 -106022719 + L1Md_F2 LINE L1 5588 6570 -12 6 916 453 133 66 9 chr6 43494816 43494922 -106022115 - Lx9 LINE L1 -2 7642 7531 6 916 345 82 0 0 chr6 43494930 43494979 -106022058 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 916 421 149 81 0 chr6 43494979 43495066 -106021971 - Lx9 LINE L1 -168 7476 7383 6 916 498 306 52 75 chr6 43495777 43495989 -106021048 + B3 SINE B2 10 216 0 6 916 250 318 0 0 chr6 43496947 43497013 -106020024 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 6 916 1081 66 0 0 chr6 43497237 43497373 -106019664 + B1_Mus1 SINE Alu 2 137 -11 6 916 315 0 0 0 chr6 43497373 43497408 -106019629 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 916 1489 254 44 8 chr6 43497443 43497805 -106019232 - MTC LTR MaLR -12 409 35 6 916 465 301 0 89 chr6 43498784 43498941 -106018096 - RSINE1 SINE B4 -20 145 3 6 916 303 85 0 0 chr6 43499545 43499592 -106017445 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 916 554 290 6 55 chr6 43500780 43500944 -106016093 - B3 SINE B2 -58 158 3 1 916 398 352 0 16 chr6 43500973 43501100 -106015937 + RSINE1 SINE B4 37 161 -4 2 916 344 385 4 0 chr6 43501175 43501432 -106015605 - L1M2 LINE L1 -1308 4835 4578 3 916 325 316 121 39 chr6 43501461 43501849 -106015188 + L1M2 LINE L1 3128 3547 -2596 4 916 1415 141 189 0 chr6 43501907 43502177 -106014860 + Lx LINE L1 6331 6651 -3 5 916 271 247 16 2 chr6 43502162 43502247 -106014790 + L1M2 LINE L1 3593 3678 -2465 4 916 3487 73 30 2 chr6 43502301 43502770 -106014267 + RLTR45 LTR ERVK 1 482 0 6 916 10531 115 101 23 chr6 43504485 43507747 -106009290 + Lx3_Mus LINE L1 3443 6997 -12 7 916 306 376 42 7 chr6 43507907 43508049 -106008988 + MamSINE1 SINE tRNA 3 149 -141 8 916 744 124 83 0 chr6 43508212 43508333 -106008704 + B1_Mur2 SINE Alu 19 149 0 9 916 26 82 0 0 chr6 43508343 43508404 -106008633 + AT_rich Low_complexity Low_complexity 1 61 0 1 916 678 322 46 15 chr6 43510888 43511150 -106005887 - Lx6 LINE L1 -177 7283 7014 1 916 1197 270 99 32 chr6 43511342 43511717 -106005320 - ORR1D-int LTR MaLR -949 421 22 1 916 230 312 24 36 chr6 43512637 43512720 -106004317 + ID4 SINE ID 2 83 0 1 916 26 104 0 0 chr6 43513179 43513275 -106003762 + AT_rich Low_complexity Low_complexity 1 96 0 1 916 220 372 0 50 chr6 43514334 43514359 -106002678 - ID_B1 SINE B4 -52 172 82 1 916 234 394 0 0 chr6 43514359 43514430 -106002607 - PB1D10 SINE Alu -46 71 1 1 916 6310 123 25 28 chr6 43514460 43515520 -106001517 - Lx3C LINE L1 -8 6968 5913 1 916 466 228 0 0 chr6 43515521 43515600 -106001437 - B3 SINE B2 -137 79 1 1 916 22 56 0 0 chr6 43515601 43515637 -106001400 + AT_rich Low_complexity Low_complexity 1 36 0 1 917 301 198 41 0 chr6 43516148 43516269 -106000768 + (TA)n Simple_repeat Simple_repeat 2 127 0 2 917 359 258 0 0 chr6 43516397 43516459 -106000578 + ID4 SINE ID 12 73 -10 2 917 340 277 108 0 chr6 43516459 43516480 -106000557 + ID_B1 SINE B4 12 103 -121 2 917 271 336 53 30 chr6 43516734 43516866 -106000171 + MLT1K LTR MaLR 450 584 -11 2 917 1049 96 0 0 chr6 43516868 43517014 -106000023 + B1_Mus1 SINE Alu 3 148 0 2 917 279 270 53 7 chr6 43519150 43519252 -105997785 + B4 SINE B4 1 107 -58 2 917 333 0 0 0 chr6 43519827 43519864 -105997173 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 917 555 16 0 0 chr6 43519864 43519927 -105997110 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 917 538 291 84 119 chr6 43519929 43520112 -105996925 - B4A SINE B4 -16 276 78 2 917 313 39 39 0 chr6 43520112 43520163 -105996874 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 2 917 538 291 84 119 chr6 43520163 43520264 -105996773 - B4A SINE B4 -215 77 2 2 917 405 266 208 15 chr6 43520531 43520920 -105996117 + L1M2 LINE L1 3686 4149 -1994 3 917 1066 101 0 7 chr6 43521226 43521375 -105995662 + B1_Mus1 SINE Alu 1 148 0 3 917 237 278 68 62 chr6 43522841 43523002 -105994035 - L1M5 LINE L1 -487 5707 5546 3 917 204 40 0 0 chr6 43523662 43523687 -105993350 + (CACTA)n Simple_repeat Simple_repeat 2 26 0 3 917 216 0 0 0 chr6 43523746 43523770 -105993267 + (T)n Simple_repeat Simple_repeat 1 24 0 3 917 312 27 0 0 chr6 43524706 43524743 -105992294 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 917 486 302 39 0 chr6 43524745 43524874 -105992163 - B1_Mur3 SINE Alu -15 134 1 3 917 239 284 64 72 chr6 43524772 43524897 -105992140 - MT2B LTR ERVL -341 260 137 3 917 262 297 25 17 chr6 43527326 43527446 -105989591 + L1MA5 LINE L1 6159 6279 -21 3 917 420 20 0 0 chr6 43527581 43527630 -105989407 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 917 6796 118 60 9 chr6 43528737 43529080 -105987957 + Lx2 LINE L1 5813 6159 -838 4 917 3140 6 0 0 chr6 43529080 43529426 -105987611 + ORR1A0 LTR MaLR 1 346 0 4 917 6796 118 60 9 chr6 43529426 43530184 -105986853 + Lx2 LINE L1 6160 6970 -27 4 917 201 24 0 89 chr6 43530185 43530230 -105986807 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 4 917 248 318 55 0 chr6 43530905 43531015 -105986022 - L1MA9 LINE L1 -24 6288 6173 4 917 951 265 143 16 chr6 43534806 43535170 -105981867 - MTD LTR MaLR 0 419 10 4 917 1058 88 0 0 chr6 43535821 43535957 -105981080 + B1_Mus1 SINE Alu 5 140 -8 4 917 222 37 0 0 chr6 43535957 43535984 -105981053 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 4 917 229 156 0 0 chr6 43536782 43536827 -105980210 + Lx8 LINE L1 7428 7472 -1 4 917 23 0 0 0 chr6 43537125 43537148 -105979889 + AT_rich Low_complexity Low_complexity 1 23 0 4 917 463 243 41 61 chr6 43537216 43537406 -105979631 + MIRb SINE MIR 65 253 -15 4 917 978 162 57 11 chr6 43537786 43537961 -105979076 - ORR1C2 LTR MaLR 0 384 202 5 917 2476 99 101 24 chr6 43537978 43538393 -105978644 - Lx3B LINE L1 -3 6970 6524 5 917 569 89 0 0 chr6 43538393 43538472 -105978565 + Lx3_Mus LINE L1 5835 5913 -1096 5 917 671 194 121 22 chr6 43538472 43538692 -105978345 - ORR1C2 LTR MaLR -124 222 6 5 917 4317 47 0 0 chr6 43539670 43540200 -105976837 - L1Md_F2 LINE L1 0 6582 6053 5 917 2175 38 4 0 chr6 43540201 43540464 -105976573 + L1Md_F2 LINE L1 5778 6041 -541 5 917 488 255 70 65 chr6 43540464 43540678 -105976359 - Tigger13a DNA MER2_type -104 667 453 5 917 315 231 36 36 chr6 43540729 43540841 -105976196 - Lx5 LINE L1 0 7050 6939 5 917 304 309 83 35 chr6 43542403 43542547 -105974490 + L1MD LINE L1 4311 4461 -1685 5 917 245 119 71 0 chr6 43543085 43543127 -105973910 - Lx LINE L1 -472 6182 6138 5 917 2766 162 56 19 chr6 43543250 43543771 -105973266 + Lx LINE L1 6115 6654 0 5 917 206 208 0 36 chr6 43544031 43544086 -105972951 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 5 917 798 323 50 30 chr6 43544090 43544352 -105972685 - B4A SINE B4 0 292 26 6 917 259 191 53 63 chr6 43544383 43544478 -105972559 + L1_Mur2 LINE L1 2714 2807 -3070 6 917 304 367 25 8 chr6 43544518 43544639 -105972398 - MLT1F1 LTR MaLR -82 487 365 6 917 495 332 89 42 chr6 43544675 43544911 -105972126 - MLT1F1 LTR MaLR -309 260 14 6 917 293 342 89 16 chr6 43544971 43545161 -105971876 - Kanga1d DNA Tc2 -274 335 132 6 917 14625 104 40 31 chr6 43545176 43548859 -105968178 - L1VL4 LINE L1 -1788 4098 390 6 917 186 43 0 0 chr6 43548863 43548886 -105968151 + (T)n Simple_repeat Simple_repeat 1 23 0 6 917 348 127 0 0 chr6 43548986 43549041 -105967996 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 917 311 194 30 0 chr6 43549516 43549583 -105967454 + L1_Rod LINE L1 2310 2378 -3469 6 917 654 185 58 29 chr6 43549583 43549722 -105967315 + MT2B2 LTR ERVL 441 583 -1 6 917 487 292 32 15 chr6 43549755 43549891 -105967146 - RSINE1 SINE B4 -20 145 2 6 917 384 59 0 0 chr6 43550023 43550074 -105966963 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 917 393 272 22 94 chr6 43550927 43551065 -105965972 - RMER12 LTR ERVK 0 1322 1195 7 917 4881 172 101 15 chr6 43551096 43551242 -105965795 - RMER12 LTR ERVK -237 1085 889 7 917 333 0 0 0 chr6 43551242 43551279 -105965758 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 917 4881 172 101 15 chr6 43551279 43552131 -105964906 - RMER12 LTR ERVK -434 888 1 7 917 31 0 0 0 chr6 43553054 43553085 -105963952 + AT_rich Low_complexity Low_complexity 1 31 0 7 917 496 291 102 27 chr6 43553420 43553755 -105963282 - L1MB8 LINE L1 -21 6157 5798 7 917 334 303 197 29 chr6 43553765 43554044 -105962993 - L1MB8 LINE L1 -503 5681 5356 7 917 4480 134 18 20 chr6 43554045 43554797 -105962240 + L1VL1 LINE L1 394 1146 -5578 7 917 751 115 18 0 chr6 43554797 43554910 -105962127 + B1_Mm SINE Alu 33 147 0 7 917 591 135 0 0 chr6 43554910 43555006 -105962031 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 7 917 10309 93 18 4 chr6 43555006 43556645 -105960392 + L1VL1 LINE L1 1105 2766 -1148 7 917 394 57 0 0 chr6 43556645 43556730 -105960307 + L1_Mus2 LINE L1 6504 6566 0 7 917 234 200 25 51 chr6 43556730 43556809 -105960228 - L1MB8 LINE L1 -845 5344 5268 7 917 722 232 11 42 chr6 43556822 43557011 -105960026 + ORR1D1 LTR MaLR 1 183 -191 7 917 507 138 0 0 chr6 43557011 43557098 -105959939 + (TC)n Simple_repeat Simple_repeat 1 87 0 8 917 913 183 51 79 chr6 43557100 43557314 -105959723 + ORR1D1 LTR MaLR 166 373 -1 7 917 235 247 32 43 chr6 43557325 43557418 -105959619 - L1MB8 LINE L1 -900 5246 5155 7 917 23 33 0 0 chr6 43557427 43557457 -105959580 + AT_rich Low_complexity Low_complexity 1 30 0 8 917 265 310 0 0 chr6 43557646 43557704 -105959333 - RSINE1 SINE B4 -18 147 90 8 917 677 275 99 0 chr6 43558704 43558926 -105958111 + Lx7 LINE L1 7115 7358 -338 8 917 225 265 99 33 chr6 43559106 43559227 -105957810 + RLTR12B LTR ERVK 158 286 -242 8 917 1388 231 62 59 chr6 43559645 43560401 -105956636 + RMER3D-int LTR ERVK 101 1386 -1456 8 917 22 35 0 0 chr6 43561654 43561683 -105955354 + AT_rich Low_complexity Low_complexity 1 29 0 8 917 1095 88 0 101 chr6 43561683 43561872 -105955165 - L1_Mus2 LINE L1 0 6566 6397 8 917 423 206 0 0 chr6 43562546 43562653 -105954384 + Lx9 LINE L1 7536 7642 -2 8 917 422 242 44 0 chr6 43562789 43562880 -105954157 + B3A SINE B2 10 104 -94 8 917 224 256 161 58 chr6 43562918 43562977 -105954060 - B2_Mm1a SINE B2 0 193 2 9 917 487 261 35 0 chr6 43562977 43563092 -105953945 - RSINE1 SINE B4 -44 121 3 9 917 21 36 0 0 chr6 43563162 43563190 -105953847 + AT_rich Low_complexity Low_complexity 1 28 0 9 917 592 259 7 26 chr6 43563191 43563342 -105953695 + B1_Mur1 SINE Alu 1 148 -1 9 917 463 256 73 24 chr6 43563383 43563507 -105953530 + B3 SINE B2 1 130 -86 9 917 2217 164 34 18 chr6 43563727 43564175 -105952862 - RMER6A LTR ERVK -1 755 301 9 917 186 31 0 158 chr6 43564923 43564961 -105952076 + MIRb SINE MIR 231 262 -6 9 917 378 0 0 0 chr6 43566189 43566231 -105950806 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 917 23 92 0 0 chr6 43566438 43566503 -105950534 + AT_rich Low_complexity Low_complexity 1 65 0 9 917 273 128 0 0 chr6 43567297 43567344 -105949693 + L2b LINE L2 3308 3354 -21 9 917 583 239 14 40 chr6 43567543 43567691 -105949346 + B1_Mus2 SINE Alu 3 146 -1 1 917 22 0 0 0 chr6 43568503 43568525 -105948512 + AT_rich Low_complexity Low_complexity 1 22 0 1 917 300 285 47 81 chr6 43568922 43569094 -105947943 + MER104 DNA Tc2 7 172 -9 1 917 231 307 114 46 chr6 43570321 43570507 -105946530 - MIR3 SINE MIR -69 193 8 1 917 2391 203 44 3 chr6 43571075 43571648 -105945389 + Lx7 LINE L1 3602 4197 -1683 1 917 270 0 0 0 chr6 43571659 43571689 -105945348 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 917 1510 224 53 11 chr6 43571691 43571857 -105945180 + Lx7 LINE L1 4647 4822 -1058 1 917 207 0 0 0 chr6 43571857 43571880 -105945157 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 917 1510 224 53 11 chr6 43571880 43572165 -105944872 + Lx7 LINE L1 4823 5116 -764 1 917 3874 265 41 38 chr6 43572162 43573696 -105943341 + Lx7 LINE L1 5474 7000 -696 1 917 1276 37 12 0 chr6 43573691 43573855 -105943182 + L1Md_F2 LINE L1 6109 6274 -308 1 917 425 301 54 34 chr6 43573855 43574003 -105943034 + MER34A1 LTR ERV1 191 341 -246 1 917 2444 51 0 9 chr6 43574004 43574319 -105942718 + L1Md_F2 LINE L1 6269 6580 -2 1 917 668 326 12 4 chr6 43574336 43574595 -105942442 + Lx7 LINE L1 7019 7279 -417 1 917 465 19 0 0 chr6 43574595 43574649 -105942388 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 917 1048 289 86 42 chr6 43574874 43575194 -105941843 + MER34A1 LTR ERV1 20 350 -237 1 917 2412 56 0 0 chr6 43575194 43575496 -105941541 + L1Md_F2 LINE L1 6269 6570 -12 1 917 1048 289 86 42 chr6 43575496 43575651 -105941386 + MER34A1 LTR ERV1 351 516 -71 1 917 33802 35 0 0 chr6 43575719 43581164 -105935873 + L1Md_T LINE L1 48 5589 -297 1 917 8967 6 1 0 chr6 43581164 43582159 -105934878 + L1Md_T LINE L1 5590 6585 0 1 917 183 80 0 0 chr6 43582176 43582201 -105934836 + (A)n Simple_repeat Simple_repeat 1 25 0 1 917 34 42 0 0 chr6 43582291 43582339 -105934698 + AT_rich Low_complexity Low_complexity 1 48 0 1 917 941 265 177 7 chr6 43583027 43583327 -105933710 - ORR1D2 LTR MaLR -19 351 1 1 917 306 282 77 45 chr6 43583654 43583810 -105933227 + HERVL40-int LTR ERVL 5342 5502 -28 1 917 253 286 50 20 chr6 43583837 43583937 -105933100 + LTR40b LTR ERVL 1 103 -416 1 917 263 365 86 29 chr6 43584054 43584101 -105932936 + LTR40b LTR ERVL 240 291 -171 1 917 243 0 0 0 chr6 43584101 43584128 -105932909 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 917 263 365 86 29 chr6 43584128 43584255 -105932782 + LTR40b LTR ERVL 292 424 -38 1 917 1592 61 8 54 chr6 43584281 43584522 -105932515 - L1_Mus2 LINE L1 0 6566 6337 1 917 417 20 0 0 chr6 43584540 43584590 -105932447 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 917 353 247 75 68 chr6 43586598 43586759 -105930278 + MER57C2 LTR ERV1 264 425 -9 1 917 602 169 284 46 chr6 43587487 43587648 -105929389 + Lx9 LINE L1 7284 7515 -129 1 917 342 0 0 0 chr6 43587648 43587686 -105929351 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 917 602 169 284 46 chr6 43587686 43587809 -105929228 + Lx9 LINE L1 7516 7636 -8 1 917 641 284 151 11 chr6 43587991 43588467 -105928570 + L1MD2 LINE L1 5276 5818 -424 1 917 228 277 92 8 chr6 43588600 43588720 -105928317 + L1MD2 LINE L1 5991 6120 -239 1 917 1480 240 133 14 chr6 43588757 43589124 -105927913 - MTD LTR MaLR -8 411 1 1 917 756 70 97 0 chr6 43589236 43589250 -105927787 + B1_Mus2 SINE Alu 23 36 -111 1 917 890 226 38 24 chr6 43589250 43589463 -105927574 + B3 SINE B2 1 216 0 1 917 756 70 97 0 chr6 43589463 43589562 -105927475 + B1_Mus2 SINE Alu 37 145 -2 1 917 234 166 692 0 chr6 43589591 43589695 -105927342 + L1M2 LINE L1 5429 5604 -687 1 917 1152 62 7 0 chr6 43589698 43589844 -105927193 + B1_Mus1 SINE Alu 2 148 0 1 917 231 146 0 0 chr6 43589844 43589885 -105927152 + (A)n Simple_repeat Simple_repeat 1 41 0 1 917 588 273 48 16 chr6 43589951 43590137 -105926900 + B3A SINE B2 2 193 -5 1 917 499 156 0 7 chr6 43591789 43591884 -105925153 + B3A SINE B2 20 111 -84 1 917 1218 218 40 4 chr6 43591882 43592154 -105924883 + RCHARR1 DNA MER1_type 239 520 -454 1 917 538 183 0 0 chr6 43592188 43592281 -105924756 + RSINE1 SINE B4 44 136 -29 1 917 411 21 0 0 chr6 43592286 43592334 -105924703 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 917 469 364 105 8 chr6 43592334 43592724 -105924313 + L2 LINE L2 1829 2256 -1163 1 917 1068 167 55 10 chr6 43593116 43593316 -105923721 + B3 SINE B2 3 211 -5 1 917 21 0 0 0 chr6 43594359 43594380 -105922657 + AT_rich Low_complexity Low_complexity 1 21 0 1 917 181 268 189 58 chr6 43595200 43595390 -105921647 - L3 LINE CR1 -222 4267 4053 1 917 252 0 0 0 chr6 43597467 43597495 -105919542 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 917 1364 229 22 74 chr6 43597682 43598046 -105918991 - ORR1E LTR MaLR -14 345 1 1 917 25 0 0 0 chr6 43599020 43599045 -105917992 + AT_rich Low_complexity Low_complexity 1 25 0 1 917 1155 69 0 0 chr6 43599074 43599218 -105917819 + B1_Mm SINE Alu 4 147 0 1 917 320 111 19 0 chr6 43599218 43599272 -105917765 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 1 917 276 224 92 0 chr6 43599985 43600083 -105916954 - LTR37A LTR ERV1 -2 424 318 1 917 186 103 0 0 chr6 43600289 43600318 -105916719 + (TTG)n Simple_repeat Simple_repeat 3 31 0 1 917 225 320 19 29 chr6 43600440 43600543 -105916494 - LTR37A LTR ERV1 -227 199 98 1 917 590 275 52 39 chr6 43600761 43600916 -105916121 + ID_B1 SINE B4 2 158 -66 1 917 362 312 397 5 chr6 43600922 43601127 -105915910 + B4A SINE B4 7 292 0 1 917 194 255 19 19 chr6 43601531 43601583 -105915454 + L2a LINE L2 3298 3349 -77 1 917 303 28 0 0 chr6 43601651 43601687 -105915350 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 917 192 158 0 0 chr6 43601705 43601743 -105915294 + GA-rich Low_complexity Low_complexity 2 39 0 1 917 458 280 165 61 chr6 43602173 43602500 -105914537 - MTEa LTR MaLR 0 379 19 1 917 181 255 21 0 chr6 43603349 43603396 -105913641 + MIRb SINE MIR 213 260 -8 1 917 485 316 87 0 chr6 43603647 43603843 -105913194 + RMER5 LTR ERV1 49 261 -273 1 917 465 323 43 0 chr6 43606068 43606254 -105910783 + Charlie5 DNA MER1_type 2324 2517 -107 1 917 249 197 0 38 chr6 43606606 43606685 -105910352 + CT-rich Low_complexity Low_complexity 1 76 0 1 917 982 253 156 9 chr6 43606799 43607222 -105909815 + MER31A LTR ERV1 1 485 0 1 917 228 360 0 35 chr6 43607390 43607505 -105909532 - Tigger5 DNA MER2_type -5 2401 2291 1 917 581 291 158 26 chr6 43607646 43607918 -105909119 + MLT1B LTR MaLR 33 340 -50 1 917 32 0 0 0 chr6 43607925 43607957 -105909080 + AT_rich Low_complexity Low_complexity 1 32 0 1 917 266 212 45 0 chr6 43607973 43608039 -105908998 - B3A SINE B2 -128 70 2 1 917 234 340 37 19 chr6 43608989 43609097 -105907940 - MIRb SINE MIR -112 156 47 1 917 509 237 192 93 chr6 43609183 43609569 -105907468 + Charlie2b DNA MER1_type 2210 2633 -149 1 917 427 264 36 18 chr6 43610243 43610346 -105906691 - B1F2 SINE Alu 0 149 45 1 917 1045 282 91 15 chr6 43610346 43610710 -105906327 - MTE2a LTR MaLR -1 378 16 1 917 453 326 61 0 chr6 43611517 43611649 -105905388 + RSINE1 SINE B4 22 161 -4 1 917 180 286 0 51 chr6 43612642 43612701 -105904336 - MIRm SINE MIR -88 188 133 1 917 233 218 0 18 chr6 43612948 43613004 -105904033 + L1M5 LINE L1 5600 5654 -470 1 917 314 318 97 45 chr6 43613218 43613373 -105903664 + ID_B1 SINE B4 21 183 -41 1 917 706 283 34 68 chr6 43614855 43615060 -105901977 + B4 SINE B4 91 288 -4 1 917 300 236 13 40 chr6 43615240 43615315 -105901722 + ID4_ SINE ID 2 74 -9 1 917 326 288 9 35 chr6 43615544 43615659 -105901378 - MIR SINE MIR -62 200 89 1 917 26 50 0 0 chr6 43616088 43616128 -105900909 + GC_rich Low_complexity Low_complexity 1 40 0 1 917 862 263 124 66 chr6 43616934 43617607 -105899430 - L1MA4 LINE L1 -303 5997 5276 1 917 1176 173 272 6 chr6 43617607 43617956 -105899081 + RMER10A LTR ERVL 1 442 0 1 917 288 257 60 68 chr6 43617956 43617976 -105899061 - L1MA4 LINE L1 -868 5275 5257 1 917 812 299 123 8 chr6 43617998 43618477 -105898560 - L1MA4 LINE L1 -1056 5087 4554 1 917 1076 184 92 0 chr6 43618477 43618695 -105898342 - RLTR42 LTR ERVK 0 239 2 1 917 2542 154 57 18 chr6 43618698 43619207 -105897830 - RLTR42-int LTR ERVK -5 5517 4989 1 917 1131 149 5 31 chr6 43619225 43619419 -105897618 + URR1B DNA MER1_type 37 225 0 1 917 1229 107 5 5 chr6 43619421 43619619 -105897418 - RLTR42-int LTR ERVK -529 4993 4796 1 917 2524 157 128 34 chr6 43619625 43620213 -105896824 + RMER6C LTR ERVK 3 645 -45 1 917 349 269 51 34 chr6 43620217 43620394 -105896643 - L1MA5 LINE L1 -323 5977 5798 1 917 807 199 47 25 chr6 43620425 43620609 -105896428 + RMER6C LTR ERVK 552 716 -4 1 917 9749 169 46 75 chr6 43620631 43622130 -105894907 - RLTR42-int LTR ERVK -725 4797 3308 1 917 859 188 0 7 chr6 43622130 43622280 -105894757 + B1_Mur4 SINE Alu 2 150 0 1 917 9749 169 46 75 chr6 43622280 43623322 -105893715 - RLTR42-int LTR ERVK -2215 3307 2329 1 917 720 250 192 45 chr6 43623348 43623622 -105893415 - MTEa LTR MaLR -65 314 1 1 917 489 253 211 84 chr6 43623627 43623811 -105893226 - L1MA4 LINE L1 -3426 2717 2552 1 917 1704 225 71 87 chr6 43623811 43624434 -105892603 + RLTR18 LTR ERVK 1 613 -3 1 917 489 253 211 84 chr6 43624434 43624581 -105892456 - L1MA4 LINE L1 -3592 2551 2345 1 917 238 345 44 39 chr6 43624645 43624850 -105892187 - MER65D LTR ERV1 -60 413 208 1 917 248 143 18 0 chr6 43625360 43625416 -105891621 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 917 414 0 0 0 chr6 43625416 43625462 -105891575 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 917 226 231 19 19 chr6 43625464 43625517 -105891520 - MER92B LTR ERV1 -578 58 6 1 917 1052 243 43 0 chr6 43626484 43626719 -105890318 + MTE2b LTR MaLR 3 247 -132 1 917 1816 175 62 3 chr6 43626808 43627163 -105889874 - ORR1C1 LTR MaLR 0 378 3 1 917 2386 166 54 19 chr6 43627388 43627868 -105889169 - RLTR28 LTR ERVL -27 497 1 1 917 247 78 0 0 chr6 43628129 43628180 -105888857 + L1Md_F2 LINE L1 6532 6582 0 1 917 319 366 64 10 chr6 43628584 43628788 -105888249 + L1M5 LINE L1 4806 5020 -1126 1 917 524 303 23 27 chr6 43630001 43630468 -105886569 - L1MEc LINE L1 -4569 2533 2076 1 917 721 298 136 24 chr6 43630511 43630834 -105886203 - L1MEc LINE L1 -5214 1873 1504 1 917 186 71 0 0 chr6 43630834 43630862 -105886175 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 917 721 298 136 24 chr6 43630862 43631133 -105885904 - L1MEc LINE L1 -5584 1503 1212 1 917 1121 240 82 75 chr6 43631248 43631663 -105885374 + MTD LTR MaLR 2 419 0 1 917 182 128 26 0 chr6 43631936 43631975 -105885062 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 917 325 81 16 16 chr6 43632154 43632217 -105884820 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 1 917 541 222 0 0 chr6 43632224 43632332 -105884705 - B1_Mur2 SINE Alu -2 147 40 1 917 505 307 71 51 chr6 43632503 43632851 -105884186 - ORR1E LTR MaLR 0 379 5 1 917 258 347 20 10 chr6 43633227 43633326 -105883711 - MIR SINE MIR -32 230 131 2 917 268 328 22 22 chr6 43633439 43633576 -105883461 + (CATATA)n Simple_repeat Simple_repeat 1 137 0 2 917 1459 238 79 48 chr6 43633631 43634024 -105883013 - MTD LTR MaLR -14 405 1 2 917 192 40 0 0 chr6 43634370 43634395 -105882642 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 917 372 22 0 0 chr6 43634528 43634573 -105882464 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 917 302 128 96 22 chr6 43634980 43635116 -105881921 + (TA)n Simple_repeat Simple_repeat 2 147 0 2 917 360 0 0 0 chr6 43635287 43635327 -105881710 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 917 201 310 80 53 chr6 43635368 43635518 -105881519 + L2c LINE L2 3233 3386 -1 2 917 320 279 13 0 chr6 43635575 43635654 -105881383 + ID4_ SINE ID 3 82 -1 2 917 291 335 70 29 chr6 43637195 43637367 -105879670 + Kanga1 DNA Tc2 1 179 -1566 2 917 399 269 63 19 chr6 43637413 43637572 -105879465 + Kanga1 DNA Tc2 1575 1740 -5 2 917 209 291 74 25 chr6 43637574 43637655 -105879382 - MIR SINE MIR -100 162 78 2 917 1803 180 10 93 chr6 43637763 43638149 -105878888 - ORR1B1 LTR MaLR 0 394 41 2 917 247 98 0 56 chr6 43638415 43638469 -105878568 + CT-rich Low_complexity Low_complexity 3 53 0 2 917 396 0 0 0 chr6 43640274 43640318 -105876719 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 917 2036 174 35 35 chr6 43640583 43640988 -105876049 + MTB_Mm LTR MaLR 1 405 -2 2 917 352 314 35 39 chr6 43641598 43641880 -105875157 - L1M4 LINE L1 -407 5771 5491 2 917 543 313 118 14 chr6 43642049 43642269 -105874768 - B4A SINE B4 -35 257 15 2 917 361 280 119 20 chr6 43642269 43642612 -105874425 - L1M4 LINE L1 -771 5375 4999 2 917 415 220 0 10 chr6 43642628 43642729 -105874308 - Lx2 LINE L1 -11 6986 6887 2 917 247 275 12 12 chr6 43642733 43642814 -105874223 + CT-rich Low_complexity Low_complexity 4 84 0 2 917 491 292 105 16 chr6 43642834 43643157 -105873880 - L1M4 LINE L1 -1533 4613 4262 2 917 1109 226 24 184 chr6 43643441 43643945 -105873092 + RLTR23 LTR ERV1 8 430 0 2 917 1326 281 134 2 chr6 43644309 43644518 -105872519 + Lx8 LINE L1 6731 6965 -508 2 917 306 50 0 0 chr6 43644518 43644558 -105872479 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 917 1326 281 134 2 chr6 43644558 43644876 -105872161 + Lx8 LINE L1 6966 7327 -146 2 917 237 274 30 50 chr6 43645150 43645250 -105871787 + MTEa LTR MaLR 1 98 -281 2 917 1405 68 16 21 chr6 43645694 43645888 -105871149 + B2_Mm2 SINE B2 1 193 -2 2 917 323 0 48 0 chr6 43646337 43646379 -105870658 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 2 917 225 132 0 0 chr6 43646756 43646794 -105870243 + (T)n Simple_repeat Simple_repeat 1 38 0 2 918 532 265 185 39 chr6 43647317 43647603 -105869434 - MLT1B LTR MaLR -62 328 1 2 918 928 46 8 8 chr6 43649659 43649790 -105867247 + (TG)n Simple_repeat Simple_repeat 2 132 0 2 918 305 277 127 42 chr6 43650553 43650719 -105866318 + MIRb SINE MIR 39 218 -50 2 918 4568 45 4 0 chr6 43650719 43651274 -105865763 + L1Md_F2 LINE L1 6025 6581 -1 2 918 227 273 200 0 chr6 43652178 43652233 -105864804 - tRNA-Ala-GCY_ tRNA tRNA -7 68 3 2 918 221 254 167 45 chr6 43652233 43652244 -105864793 - ID4_ SINE ID -9 74 1 2 918 337 311 49 8 chr6 43652253 43652376 -105864661 - B1F1 SINE Alu -5 144 17 2 918 776 116 25 75 chr6 43652464 43652623 -105864414 + B2_Mm2 SINE B2 1 151 -44 2 918 413 0 39 0 chr6 43652626 43652678 -105864359 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 2 918 438 36 0 0 chr6 43652852 43652908 -105864129 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 918 225 0 0 0 chr6 43652908 43652932 -105864105 + (GA)n Simple_repeat Simple_repeat 1 25 0 2 918 369 0 0 0 chr6 43653497 43653538 -105863499 + (T)n Simple_repeat Simple_repeat 1 41 0 2 918 634 165 0 0 chr6 43653959 43654068 -105862969 - URR1B DNA MER1_type 0 225 117 2 918 244 62 0 0 chr6 43654089 43654121 -105862916 - URR1B DNA MER1_type -189 36 5 2 918 261 0 0 0 chr6 43654342 43654371 -105862666 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 918 279 250 0 14 chr6 43654381 43654450 -105862587 - ID4 SINE ID -13 70 3 2 918 900 247 10 30 chr6 43654477 43654677 -105862360 - B3 SINE B2 0 216 21 2 918 325 345 16 25 chr6 43655110 43655232 -105861805 + L2b LINE L2 3251 3371 -4 2 918 305 0 50 0 chr6 43655285 43655325 -105861712 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2 918 232 313 162 37 chr6 43655752 43655888 -105861149 - MIRc SINE MIR -37 231 79 2 918 213 119 0 0 chr6 43656446 43656488 -105860549 + (A)n Simple_repeat Simple_repeat 1 42 0 2 918 775 153 138 13 chr6 43656494 43656646 -105860391 - B2_Mm2 SINE B2 -23 172 2 2 918 180 200 0 0 chr6 43657064 43657104 -105859933 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 2 918 449 208 204 72 chr6 43657166 43657347 -105859690 - B3A SINE B2 -8 208 4 2 918 2494 255 15 41 chr6 43658057 43658740 -105858297 - Lx6 LINE L1 0 7460 6796 2 918 5152 168 59 22 chr6 43658741 43659355 -105857682 - L1_Mur3 LINE L1 -10 5870 5222 2 918 4610 139 59 1 chr6 43659355 43660103 -105856934 - Lx4A LINE L1 -10 7048 6258 2 918 5152 168 59 22 chr6 43660103 43660649 -105856388 - L1_Mur3 LINE L1 -659 5221 4668 2 918 4648 164 86 7 chr6 43660646 43661623 -105855414 - Lx4B LINE L1 -415 6643 5590 2 918 192 77 0 0 chr6 43661623 43661649 -105855388 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 2 918 6582 111 23 30 chr6 43661649 43661780 -105855257 - Lx LINE L1 -3 6651 6522 2 918 5443 110 21 58 chr6 43661780 43662716 -105854321 + RLTR13D6 LTR ERVK 1 902 0 2 918 17804 151 26 24 chr6 43662716 43665705 -105851332 - Lx LINE L1 -133 6521 3491 2 918 198 0 0 0 chr6 43665705 43665727 -105851310 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2 918 17804 169 27 22 chr6 43665727 43666092 -105850945 - Lx LINE L1 -2396 3490 3172 2 918 1211 54 0 13 chr6 43666092 43666241 -105850796 - B1_Mus2 SINE Alu 0 147 1 2 918 17804 169 27 22 chr6 43666241 43667239 -105849798 - Lx LINE L1 -2715 3171 2158 2 918 423 0 0 0 chr6 43667239 43667286 -105849751 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 918 441 95 0 0 chr6 43667286 43667348 -105849689 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 918 2751 27 0 0 chr6 43667348 43667680 -105849357 - L1Md_F2 LINE L1 -25 6557 6226 2 918 3901 39 0 0 chr6 43667678 43668167 -105848870 + L1Md_F2 LINE L1 5731 6219 -363 2 918 4137 90 3 0 chr6 43668164 43668808 -105848229 - L1VL4 LINE L1 -1755 1804 1159 2 918 5771 125 2 35 chr6 43668804 43670023 -105847014 + L1VL2 LINE L1 1005 2160 -3723 2 918 5478 131 12 4 chr6 43670021 43671157 -105845880 - L1VL4 LINE L1 -2401 1158 13 2 918 3396 138 15 9 chr6 43671163 43671816 -105845221 - L1_Mur3 LINE L1 -2220 3657 3001 2 918 1337 204 6 10 chr6 43671820 43672132 -105844905 + L1_Mur2 LINE L1 2060 2370 -3507 2 918 1227 157 33 6 chr6 43672122 43672244 -105844793 - L1_Mur3 LINE L1 -4490 1387 1265 2 918 315 0 0 0 chr6 43672244 43672279 -105844758 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 2 918 1227 266 12 7 chr6 43672279 43672622 -105844415 - L1_Mur3 LINE L1 -6464 1264 921 2 918 1450 186 29 171 chr6 43673041 43673397 -105843640 - L1_Mur3 LINE L1 -4111 1769 1495 2 918 243 0 0 0 chr6 43673397 43673424 -105843613 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 918 1450 166 13 138 chr6 43673424 43673748 -105843289 - L1_Mur3 LINE L1 -4386 1494 1185 2 918 996 123 0 0 chr6 43673751 43673906 -105843131 + (TC)n Simple_repeat Simple_repeat 2 156 0 2 918 404 169 28 0 chr6 43673906 43673977 -105843060 - B1_Mus2 SINE Alu -3 144 72 2 918 23 0 0 0 chr6 43673980 43674003 -105843034 + AT_rich Low_complexity Low_complexity 1 23 0 2 918 518 309 164 26 chr6 43674191 43674460 -105842577 + MLT1A LTR MaLR 17 322 -52 2 918 7322 82 1 3 chr6 43674468 43675803 -105841234 - L1_Mus1 LINE L1 0 6567 5237 2 918 227 297 14 72 chr6 43676042 43676111 -105840926 + B1_Mus2 SINE Alu 6 70 -77 2 918 643 286 7 7 chr6 43676103 43676257 -105840780 + ID_B1 SINE B4 55 208 -16 2 918 2198 179 200 61 chr6 43676257 43676476 -105840561 + RMER6C LTR ERVK 1 322 -368 2 918 3810 114 33 3 chr6 43676476 43677049 -105839988 + Lx2B LINE L1 6411 7000 0 2 918 2198 179 200 61 chr6 43677049 43677435 -105839602 + RMER6C LTR ERVK 323 689 -1 2 918 712 291 68 14 chr6 43677683 43677993 -105839044 - L1MB5 LINE L1 -229 5945 5552 2 918 897 110 0 0 chr6 43678027 43678154 -105838883 - RLTR19 LTR ERVK -338 161 35 2 918 372 270 52 43 chr6 43678788 43678904 -105838133 + RSINE1 SINE B4 23 139 -26 2 918 360 0 0 0 chr6 43678916 43678956 -105838081 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 918 629 264 69 75 chr6 43679971 43680333 -105836704 - LTR48B LTR ERV1 -212 575 27 2 918 2137 174 14 33 chr6 43680333 43680762 -105836275 - MTC LTR MaLR 0 421 1 2 918 629 278 86 95 chr6 43680762 43680788 -105836249 - LTR48B LTR ERV1 -618 26 1 2 918 228 67 0 0 chr6 43680853 43680883 -105836154 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 918 36 23 0 0 chr6 43681262 43681305 -105835732 + AT_rich Low_complexity Low_complexity 1 43 0 2 918 24 67 0 0 chr6 43682882 43682927 -105834110 + AT_rich Low_complexity Low_complexity 1 45 0 2 918 197 33 33 0 chr6 43682966 43682996 -105834041 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 918 1174 56 0 14 chr6 43682996 43683132 -105833905 - B1_Mus2 SINE Alu -10 137 2 2 918 226 333 28 28 chr6 43683156 43683264 -105833773 - MLT1F-int LTR MaLR -1202 287 180 2 918 1546 214 58 0 chr6 43684805 43685151 -105831886 + ORR1D2 LTR MaLR 5 370 0 2 918 447 19 0 0 chr6 43685156 43685208 -105831829 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 918 336 257 86 0 chr6 43685221 43685326 -105831711 - L1MA9 LINE L1 -171 6141 6028 2 918 4104 183 49 9 chr6 43685356 43686159 -105830878 - Lx3C LINE L1 -3 6973 6139 2 918 259 250 24 0 chr6 43686161 43686245 -105830792 - L1MA9 LINE L1 -273 6039 5954 2 918 1034 252 112 47 chr6 43686254 43687026 -105830011 - L1MA9 LINE L1 -463 5849 5020 2 918 486 264 62 22 chr6 43687040 43687265 -105829772 - L1MA9 LINE L1 -1934 4206 3973 2 918 288 0 0 0 chr6 43687293 43687325 -105829712 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 918 232 288 0 12 chr6 43687405 43687486 -105829551 - L1MA9 LINE L1 -2261 3882 3803 2 918 36181 31 1 0 chr6 43687636 43694449 -105822588 - L1Md_T LINE L1 0 6585 1 2 918 252 0 0 0 chr6 43695260 43695288 -105821749 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 918 241 333 40 0 chr6 43695360 43695459 -105821578 + MLT2B3 LTR ERVL 6 108 -446 2 918 317 320 10 0 chr6 43696140 43696237 -105820800 + ID_B1 SINE B4 79 176 -48 2 918 384 309 9 9 chr6 43696151 43696259 -105820778 + PB1D10 SINE Alu 9 116 -1 2 918 742 299 49 62 chr6 43696863 43697069 -105819968 - L1MB3 LINE L1 -2 6181 5983 2 918 1503 195 113 3 chr6 43697069 43697424 -105819613 + ORR1B1 LTR MaLR 1 394 0 2 918 742 299 49 62 chr6 43697424 43697666 -105819371 - L1MB3 LINE L1 -201 5982 5739 2 918 683 303 43 18 chr6 43697781 43698057 -105818980 + MER33 DNA MER1_type 31 313 -11 3 918 1380 23 0 12 chr6 43698071 43698244 -105818793 - L1Md_F3 LINE L1 -14 6570 6400 3 918 1076 280 123 23 chr6 43698266 43699160 -105817877 - L1M2 LINE L1 -3116 4048 3062 3 918 467 292 81 60 chr6 43699160 43699444 -105817593 - B4A SINE B4 0 292 3 3 918 518 277 118 47 chr6 43699444 43699696 -105817341 - L1M2 LINE L1 -4107 3061 2786 3 918 3803 40 25 0 chr6 43700245 43700716 -105816321 + L1Md_F2 LINE L1 6099 6581 -1 3 918 180 0 0 0 chr6 43700871 43700891 -105816146 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 918 314 299 6 51 chr6 43701065 43701241 -105815796 - L1M2 LINE L1 -4991 2177 2010 3 918 261 83 0 0 chr6 43701363 43701399 -105815638 - U2 snRNA snRNA -152 36 1 3 918 3078 152 10 8 chr6 43701707 43702309 -105814728 - L1_Mur2 LINE L1 -492 5385 4783 3 918 1284 197 28 43 chr6 43702400 43702663 -105814374 + RMER17C LTR ERVK 24 281 -129 3 918 533 34 83 16 chr6 43702663 43702784 -105814253 + (CTATA)n Simple_repeat Simple_repeat 1 129 0 3 918 1284 197 28 43 chr6 43702784 43702913 -105814124 + RMER17C LTR ERVK 282 410 0 3 918 2103 227 31 40 chr6 43703108 43703627 -105813410 - RMER5 LTR ERV1 -20 514 1 3 918 4271 88 5 2 chr6 43703774 43704357 -105812680 - L1_Mus1 LINE L1 0 6567 5983 3 918 211 322 10 118 chr6 43704359 43704461 -105812576 + B1_Mur1 SINE Alu 22 112 -37 3 918 379 281 191 14 chr6 43704386 43704527 -105812510 + B4 SINE B4 127 292 0 3 918 231 209 26 0 chr6 43704527 43704642 -105812395 + (CA)n Simple_repeat Simple_repeat 1 118 0 3 918 192 253 0 0 chr6 43704667 43704742 -105812295 + (CATATA)n Simple_repeat Simple_repeat 6 80 0 3 918 488 263 57 35 chr6 43705240 43705438 -105811599 - Lx3C LINE L1 -2 6974 6788 3 918 195 100 0 0 chr6 43705887 43705917 -105811120 + (A)n Simple_repeat Simple_repeat 1 30 0 3 918 3232 157 109 25 chr6 43706855 43707543 -105809494 - L1_Mus4 LINE L1 0 6636 5891 3 918 21 36 0 0 chr6 43707576 43707604 -105809433 + AT_rich Low_complexity Low_complexity 1 28 0 3 918 441 90 0 0 chr6 43707808 43707875 -105809162 + (CAAAA)n Simple_repeat Simple_repeat 2 68 0 3 918 249 57 0 0 chr6 43708200 43708235 -105808802 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 3 918 185 237 0 17 chr6 43708642 43708702 -105808335 + A-rich Low_complexity Low_complexity 4 62 0 3 918 1274 200 146 12 chr6 43709244 43709573 -105807464 - ORR1D1 LTR MaLR -1 373 1 3 918 2597 60 6 177 chr6 43709963 43710431 -105806606 + RLTR10 LTR ERVK 1 388 -2 3 918 16293 23 2 0 chr6 43710443 43712385 -105804652 + RLTR10-int LTR ERVK 41 1986 -1 3 918 2593 57 6 178 chr6 43712385 43712851 -105804186 + RLTR10 LTR ERVK 1 386 -4 3 918 462 254 62 16 chr6 43713786 43713914 -105803123 - B1_Mur1 SINE Alu -13 136 3 3 918 881 147 77 22 chr6 43713949 43714130 -105802907 - B2_Mm2 SINE B2 -3 192 2 3 918 333 0 0 0 chr6 43714251 43714288 -105802749 + (TAA)n Simple_repeat Simple_repeat 1 37 0 3 918 228 241 17 17 chr6 43715434 43715493 -105801544 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 918 324 0 0 0 chr6 43715543 43715579 -105801458 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 918 615 288 33 27 chr6 43716114 43716264 -105800773 + RSINE1 SINE B4 2 152 -13 3 918 513 290 0 0 chr6 43716297 43716473 -105800564 + CT-rich Low_complexity Low_complexity 4 179 0 3 918 702 105 0 0 chr6 43716451 43716556 -105800481 + (TTCC)n Simple_repeat Simple_repeat 2 106 0 3 918 511 216 10 0 chr6 43717303 43717400 -105799637 + B1_Mus2 SINE Alu 12 109 -38 3 918 8952 93 8 5 chr6 43717700 43719325 -105797712 - Lx3_Mus LINE L1 -81 6928 5300 3 918 225 312 35 89 chr6 43719468 43719637 -105797400 + L2b LINE L2 3222 3422 -4 3 918 282 162 0 0 chr6 43719887 43719961 -105797076 + T-rich Low_complexity Low_complexity 1 74 0 3 918 658 322 44 3 chr6 43720122 43720440 -105796597 + L1MB8 LINE L1 5464 5794 -390 3 918 470 325 34 37 chr6 43720460 43720705 -105796332 - MLT2B1 LTR ERVL -46 521 185 3 918 239 300 157 0 chr6 43720763 43720833 -105796204 + ID4_ SINE ID 3 83 0 3 918 7588 142 29 2 chr6 43720833 43722579 -105794458 + Lx3B LINE L1 5169 6970 -3 3 918 387 291 63 53 chr6 43722675 43722864 -105794173 + L1MB8 LINE L1 5861 6051 -127 3 918 724 286 14 14 chr6 43723126 43723339 -105793698 + B3 SINE B2 4 216 0 3 918 22 0 0 0 chr6 43723372 43723394 -105793643 + AT_rich Low_complexity Low_complexity 1 22 0 3 918 26 30 0 0 chr6 43723477 43723510 -105793527 + AT_rich Low_complexity Low_complexity 1 33 0 3 918 188 216 0 19 chr6 43723811 43723863 -105793174 + GA-rich Low_complexity Low_complexity 3 53 0 3 918 489 229 28 0 chr6 43725028 43725137 -105791900 + B3 SINE B2 88 199 -17 3 918 1287 301 88 21 chr6 43725474 43726454 -105790583 - L1MB1 LINE L1 0 6168 5092 3 918 4317 87 21 16 chr6 43726929 43727551 -105789486 + L1_Mus3 LINE L1 6014 6638 0 3 918 954 300 58 81 chr6 43727996 43728479 -105788558 - RMER2 LTR ERV1 0 567 96 3 918 456 19 0 0 chr6 43728576 43728629 -105788408 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 918 390 299 31 0 chr6 43729170 43729267 -105787770 + B3 SINE B2 1 100 -116 3 918 3439 63 4 27 chr6 43729267 43729755 -105787282 + RLTR44C LTR ERVK 1 477 -25 3 918 628 242 0 8 chr6 43729760 43729889 -105787148 + B3 SINE B2 89 216 0 3 918 390 299 31 0 chr6 43730603 43730700 -105786337 + B3 SINE B2 1 100 -116 3 918 511 45 0 0 chr6 43730700 43730766 -105786271 + RLTR44D LTR ERVK 1 66 -420 3 918 231 194 47 31 chr6 43731160 43731224 -105785813 + L1MA7 LINE L1 5992 6056 -235 3 918 25 0 0 0 chr6 43731710 43731735 -105785302 + AT_rich Low_complexity Low_complexity 1 25 0 3 918 405 275 201 6 chr6 43732034 43732213 -105784824 - B3 SINE B2 -1 215 2 3 918 956 211 53 19 chr6 43732230 43732438 -105784599 - ID_B1 SINE B4 -7 217 3 3 918 538 270 46 33 chr6 43733162 43733315 -105783722 - RSINE1 SINE B4 -8 157 3 3 918 219 292 89 11 chr6 43733798 43733888 -105783149 - PB1 SINE Alu -19 108 12 3 918 391 308 16 65 chr6 43733892 43734201 -105782836 - L1ME3B LINE L1 -304 5936 5643 3 918 293 291 92 92 chr6 43734206 43734266 -105782771 - LTR68 LTR ERV1 -3 737 684 3 918 631 249 45 84 chr6 43734266 43734468 -105782569 + B3A SINE B2 4 197 -1 3 918 293 291 92 92 chr6 43734468 43734570 -105782467 - LTR68 LTR ERV1 -57 683 575 3 918 2103 95 3 69 chr6 43734858 43735207 -105781830 + IAPLTR1a_Mm LTR ERVK 1 326 -11 3 918 54834 11 9 2 chr6 43735208 43741645 -105775392 + IAPEz-int LTR ERVK 1 6481 0 3 918 2084 98 3 69 chr6 43741645 43741994 -105775043 + IAPLTR1a_Mm LTR ERVK 1 326 -11 3 918 1356 165 20 20 chr6 43742138 43742386 -105774651 + MTC LTR MaLR 174 421 0 3 918 362 294 36 82 chr6 43742395 43742614 -105774423 - L1ME3B LINE L1 -693 5480 5272 3 918 794 293 91 66 chr6 43742951 43743469 -105773568 - MT2A LTR ERVL -2 531 1 3 918 222 116 0 0 chr6 43743607 43743650 -105773387 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 3 918 579 268 8 118 chr6 43743932 43744169 -105772868 + B3 SINE B2 1 211 -5 3 918 565 259 61 64 chr6 43744358 43744700 -105772337 - L1ME3B LINE L1 -2055 4091 3751 3 918 2626 193 73 26 chr6 43744723 43745030 -105772007 - RMER15 LTR ERVL -2 573 268 3 918 3035 66 10 8 chr6 43745030 43745425 -105771612 - MTA_Mm LTR MaLR 0 396 1 3 918 5793 83 146 76 chr6 43745425 43746451 -105770586 - MTA_Mm-int LTR MaLR 0 1098 1 3 918 3122 53 5 10 chr6 43746451 43746849 -105770188 - MTA_Mm LTR MaLR 0 396 1 3 918 2626 193 73 26 chr6 43746849 43747086 -105769951 - RMER15 LTR ERVL -308 267 3 3 918 3964 228 40 48 chr6 43747105 43748066 -105768971 + RMER19B LTR ERVK 27 891 -11 3 918 333 309 121 63 chr6 43748107 43748487 -105768550 - L1ME3B LINE L1 -3429 2717 2316 3 918 504 289 141 56 chr6 43748536 43748998 -105768039 - L1ME3B LINE L1 -4465 1777 1277 3 918 384 306 16 18 chr6 43749183 43749374 -105767663 - L1MB1 LINE L1 -214 5966 5769 3 918 39293 9 1 6 chr6 43749377 43755781 -105761256 - L1Md_A LINE L1 0 6582 214 3 918 333 260 0 39 chr6 43755790 43755894 -105761143 - L1MB1 LINE L1 -413 5776 5677 3 918 964 310 21 0 chr6 43756121 43756360 -105760677 + MTE2a LTR MaLR 1 244 -135 3 918 537 30 0 0 chr6 43756529 43756596 -105760441 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 918 351 327 149 22 chr6 43756597 43756866 -105760171 - L1ME3B LINE L1 -5557 685 383 3 918 1349 64 11 11 chr6 43758013 43758203 -105758834 - L1_Mus3 LINE L1 -18 6620 6431 3 918 320 59 20 0 chr6 43758380 43758431 -105758606 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 3 918 266 100 0 39 chr6 43761404 43761456 -105755581 + (TCTCTG)n Simple_repeat Simple_repeat 4 53 0 3 918 423 56 0 0 chr6 43761473 43761527 -105755510 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 918 392 79 0 45 chr6 43761529 43761595 -105755442 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 918 425 297 30 19 chr6 43761801 43761937 -105755100 - PB1D10 SINE Alu -10 139 6 3 918 321 90 0 0 chr6 43762903 43762963 -105754074 - Lx LINE L1 -576 5990 5931 3 918 4089 116 48 14 chr6 43762964 43763628 -105753409 + Lx LINE L1 5965 6651 -3 3 918 424 226 27 2 chr6 43764505 43764617 -105752420 - B1_Mus1 SINE Alu -1 119 5 3 918 837 127 95 24 chr6 43764636 43764805 -105752232 - B2_Mm2 SINE B2 -14 181 1 3 918 198 318 65 43 chr6 43765200 43765292 -105751745 + MIRc SINE MIR 95 188 -80 3 918 370 286 117 35 chr6 43766235 43766380 -105750657 + RMER15 LTR ERVL 273 429 -146 3 918 268 338 64 15 chr6 43766522 43766726 -105750311 - L1MC1 LINE L1 -68 6265 6052 3 918 215 228 35 0 chr6 43766783 43766840 -105750197 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 3 918 382 336 147 31 chr6 43766850 43767108 -105749929 - B4A SINE B4 -4 288 1 3 918 31 58 0 0 chr6 43767582 43767634 -105749403 + AT_rich Low_complexity Low_complexity 1 52 0 3 918 342 67 0 0 chr6 43767700 43767745 -105749292 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 918 3201 210 21 33 chr6 43767747 43768495 -105748542 + Lx5 LINE L1 6258 7050 0 3 918 3245 249 28 75 chr6 43768513 43769653 -105747384 - Lx9 LINE L1 -140 7504 6418 3 918 215 89 71 0 chr6 43769676 43769732 -105747305 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 918 1055 205 21 22 chr6 43769776 43770170 -105746867 - Lx9 LINE L1 -1589 6055 5632 3 918 659 177 0 21 chr6 43770248 43770392 -105746645 + L1_Rod LINE L1 4892 5032 -815 3 918 249 283 184 92 chr6 43771116 43771322 -105745715 + MLT1A1 LTR MaLR 1 225 -183 3 918 3683 72 10 2 chr6 43771821 43772305 -105744732 - L1_Mus2 LINE L1 0 6566 6079 3 918 270 54 71 0 chr6 43772704 43772760 -105744277 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 3 918 201 329 98 21 chr6 43773647 43773798 -105743239 - MIR3 SINE MIR -42 166 5 3 918 24 32 0 0 chr6 43774119 43774150 -105742887 + AT_rich Low_complexity Low_complexity 1 31 0 3 918 577 296 0 64 chr6 43774153 43774373 -105742664 + B3 SINE B2 4 209 -7 3 918 1117 80 0 0 chr6 43774379 43774517 -105742520 + B1_Mm SINE Alu 2 139 -8 4 918 479 266 58 42 chr6 43774606 43774865 -105742172 - L1MA6 LINE L1 -35 6265 6003 4 918 1622 266 78 12 chr6 43777051 43777535 -105739502 - RMER20A LTR ERVK 0 516 1 4 918 190 269 0 118 chr6 43777822 43777898 -105739139 - L4 LINE RTE -860 1169 1103 4 919 378 292 105 69 chr6 43778308 43778584 -105738453 + MLT1B LTR MaLR 1 286 -104 4 919 247 302 10 104 chr6 43778912 43778934 -105738103 - B4A SINE B4 0 292 271 4 919 243 0 0 0 chr6 43778934 43778961 -105738076 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 919 213 39 0 0 chr6 43778961 43778986 -105738051 + (TATG)n Simple_repeat Simple_repeat 3 28 0 4 919 247 302 10 104 chr6 43778986 43779058 -105737979 - B4A SINE B4 -22 270 207 4 919 298 200 0 0 chr6 43779349 43779404 -105737633 - ID4 SINE ID -3 80 26 4 919 2671 100 48 15 chr6 43779969 43780365 -105736672 + RLTR9E LTR ERVK 1 409 0 4 919 2866 40 11 8 chr6 43780371 43780860 -105736177 - L1Md_F3 LINE L1 0 6584 6184 4 919 3650 150 118 19 chr6 43781294 43781965 -105735072 + RMER19A LTR ERVK 1 737 0 4 919 2880 168 50 14 chr6 43782369 43782899 -105734138 - RMER4B LTR ERVK 0 585 49 4 919 246 128 0 0 chr6 43782899 43782938 -105734099 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 919 2880 168 50 14 chr6 43782938 43782970 -105734067 - RMER4B LTR ERVK -537 48 5 4 919 25 0 0 0 chr6 43784917 43784942 -105732095 + AT_rich Low_complexity Low_complexity 1 25 0 4 919 223 289 67 67 chr6 43785341 43785445 -105731592 - MIR3 SINE MIR -14 194 91 4 919 584 254 49 0 chr6 43786047 43786169 -105730868 + RSINE1 SINE B4 2 129 -36 4 919 405 0 0 0 chr6 43786187 43786232 -105730805 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 919 387 105 22 34 chr6 43786261 43786350 -105730687 + (TA)n Simple_repeat Simple_repeat 2 89 0 4 919 360 281 148 46 chr6 43786375 43786591 -105730446 + L1M5 LINE L1 5481 5718 -2277 4 919 454 264 85 0 chr6 43786830 43786959 -105730078 + B1_Mur1 SINE Alu 1 140 -9 4 919 180 0 0 0 chr6 43786979 43786999 -105730038 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 4 919 1865 209 39 20 chr6 43787695 43788085 -105728952 - MTD LTR MaLR -18 401 5 4 919 387 0 0 0 chr6 43788136 43788179 -105728858 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 919 353 70 18 0 chr6 43788179 43788235 -105728802 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 919 1664 232 20 13 chr6 43788276 43788673 -105728364 + Lx5 LINE L1 6648 7047 -3 4 919 922 197 175 55 chr6 43789110 43789475 -105727562 + RLTR9E LTR ERVK 1 409 0 4 919 9832 143 7 13 chr6 43789476 43791141 -105725896 + ETnERV2-int LTR ERVK 2 1656 -1658 4 919 15127 192 27 19 chr6 43791379 43794987 -105722050 + ETnERV2-int LTR ERVK 1791 6193 -1213 4 919 249 269 12 25 chr6 43794991 43795071 -105721966 + RLTR9E LTR ERVK 319 397 -12 4 919 1269 249 57 20 chr6 43795779 43796131 -105720906 + ORR1D1 LTR MaLR 5 369 -5 4 919 421 304 90 39 chr6 43797424 43797602 -105719435 + MTD LTR MaLR 3 189 -230 4 919 432 236 256 16 chr6 43797887 43798014 -105719023 + MTD LTR MaLR 139 296 -123 4 919 2260 179 105 12 chr6 43798014 43798030 -105719007 - RLTR31_Mm LTR ERVK 0 561 546 4 919 441 0 0 0 chr6 43798030 43798079 -105718958 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 919 2260 179 105 12 chr6 43798079 43798575 -105718462 - RLTR31_Mm LTR ERVK -16 545 3 4 919 571 264 0 0 chr6 43798575 43798690 -105718347 + MTD LTR MaLR 291 405 -14 4 919 897 307 97 63 chr6 43798953 43799413 -105717624 - RMER15 LTR ERVL -12 563 1 4 919 609 249 21 129 chr6 43799562 43799756 -105717281 - MTEb LTR MaLR -1 378 206 4 919 4611 119 5 51 chr6 43800712 43801559 -105715478 - RMER17A2 LTR ERVK 0 906 99 4 919 2635 167 134 33 chr6 43802478 43803024 -105714013 + RLTR26 LTR ERVK 1 601 -41 4 919 1266 53 29 0 chr6 43803024 43803195 -105713842 + L1Md_F2 LINE L1 6407 6582 0 4 919 21 0 0 0 chr6 43804713 43804734 -105712303 + AT_rich Low_complexity Low_complexity 1 21 0 4 919 2596 251 61 15 chr6 43804789 43804820 -105712217 - Lx9 LINE L1 -581 7063 7028 4 919 513 0 0 0 chr6 43804820 43804877 -105712160 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 919 2596 251 61 15 chr6 43804877 43804953 -105712084 - Lx9 LINE L1 -617 7027 6956 4 919 2074 189 29 22 chr6 43804953 43805370 -105711667 - MTC LTR MaLR 0 421 2 4 919 2596 251 61 15 chr6 43805370 43805986 -105711051 - Lx9 LINE L1 -689 6955 6307 4 919 1292 285 115 6 chr6 43807117 43807481 -105709556 + MTD LTR MaLR 1 404 -15 4 919 26 50 0 0 chr6 43807849 43807889 -105709148 + AT_rich Low_complexity Low_complexity 1 40 0 4 919 577 143 0 26 chr6 43808777 43808892 -105708145 + CT-rich Low_complexity Low_complexity 1 112 0 4 919 272 343 74 0 chr6 43809013 43809121 -105707916 - ID_B1 SINE B4 -28 196 81 4 919 278 300 161 0 chr6 43809565 43809695 -105707342 + RMER21B LTR ERV1 414 564 -278 4 919 244 89 17 35 chr6 43809743 43809801 -105707236 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 4 919 21 57 0 0 chr6 43810147 43810182 -105706855 + AT_rich Low_complexity Low_complexity 1 35 0 4 919 603 62 0 0 chr6 43810280 43810360 -105706677 + (TA)n Simple_repeat Simple_repeat 1 80 0 4 919 33853 74 5 6 chr6 43810360 43816695 -105700342 - L1Md_F3 LINE L1 -25 6559 235 4 919 550 333 37 19 chr6 43816984 43817253 -105699784 - B4A SINE B4 -17 275 2 4 919 340 302 137 60 chr6 43818042 43818057 -105698980 - B3A SINE B2 0 198 185 4 919 380 20 0 20 chr6 43818057 43818107 -105698930 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 919 396 40 0 0 chr6 43818109 43818159 -105698878 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 919 340 302 137 60 chr6 43818159 43818323 -105698714 - B3A SINE B2 -14 184 4 4 919 638 214 0 13 chr6 43818499 43818655 -105698382 + CT-rich Low_complexity Low_complexity 1 154 0 4 919 347 282 12 0 chr6 43818680 43818765 -105698272 - Lx8 LINE L1 -122 7351 7266 4 919 266 67 22 0 chr6 43818985 43819030 -105698007 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 4 919 917 281 56 7 chr6 43819136 43819423 -105697614 + MTE2b LTR MaLR 58 358 -21 4 919 1188 172 5 0 chr6 43819768 43819983 -105697054 - Lx2 LINE L1 0 6997 6782 4 919 789 133 0 0 chr6 43819983 43820103 -105696934 + Lx2 LINE L1 6392 6511 -486 4 919 23 86 0 0 chr6 43820161 43820219 -105696818 + AT_rich Low_complexity Low_complexity 1 58 0 4 919 289 345 17 50 chr6 43820507 43820745 -105696292 - L1MB8 LINE L1 -89 6089 5860 4 919 7650 173 24 20 chr6 43820748 43822702 -105694335 - Lx2B LINE L1 0 7000 5090 4 919 349 244 0 0 chr6 43822700 43822778 -105694259 + Lx2B LINE L1 5028 5105 -772 4 919 324 352 61 22 chr6 43822845 43823156 -105693881 - L1M4 LINE L1 -2322 3824 3502 4 919 21 0 0 0 chr6 43824927 43824948 -105692089 + AT_rich Low_complexity Low_complexity 1 21 0 4 919 23 33 0 0 chr6 43825124 43825154 -105691883 + AT_rich Low_complexity Low_complexity 1 30 0 4 919 3113 84 5 2 chr6 43825181 43825587 -105691450 + MTB_Mm LTR MaLR 1 407 0 4 919 461 174 84 28 chr6 43826185 43826327 -105690710 + Lx3A LINE L1 6819 6968 -13 4 919 207 0 0 0 chr6 43826327 43826350 -105690687 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 919 317 62 21 0 chr6 43828200 43828248 -105688789 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 919 250 88 0 66 chr6 43829660 43829721 -105687316 + A-rich Low_complexity Low_complexity 2 58 0 4 919 573 292 59 5 chr6 43829727 43829930 -105687107 - B3 SINE B2 -2 214 1 4 919 24 32 0 0 chr6 43830407 43830438 -105686599 + AT_rich Low_complexity Low_complexity 1 31 0 4 919 296 364 42 42 chr6 43831276 43831468 -105685569 + MLT1A0 LTR MaLR 1 192 -173 4 919 577 135 9 28 chr6 43831441 43831496 -105685541 - ORR1A4 LTR MaLR -8 321 267 4 919 3158 43 8 5 chr6 43831496 43831891 -105685146 + MTA_Mm LTR MaLR 1 396 0 4 919 577 135 9 28 chr6 43831891 43831942 -105685095 - ORR1A4 LTR MaLR -63 266 217 4 919 472 326 54 14 chr6 43832930 43833151 -105683886 - MER2 DNA MER2_type -36 309 80 4 919 599 261 84 6 chr6 43835152 43835366 -105681671 - L1MB5 LINE L1 -163 6016 5789 4 919 526 291 138 28 chr6 43837002 43837147 -105679890 - RSINE1 SINE B4 -2 163 3 4 919 23 0 0 0 chr6 43837167 43837190 -105679847 + AT_rich Low_complexity Low_complexity 1 23 0 4 919 2681 266 80 93 chr6 43837529 43839129 -105677908 + RMER1A Other Other 1 1030 0 4 919 441 0 0 0 chr6 43839670 43839719 -105677318 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 919 5316 101 9 5 chr6 43839781 43840535 -105676502 - RMER17B LTR ERVK -201 757 1 4 919 420 37 0 0 chr6 43840535 43840589 -105676448 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 919 22 0 0 0 chr6 43840747 43840769 -105676268 + AT_rich Low_complexity Low_complexity 1 22 0 4 919 261 0 0 0 chr6 43841999 43842028 -105675009 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 919 1574 137 25 67 chr6 43842378 43842660 -105674377 - L1Md_F2 LINE L1 0 6582 6313 4 919 20693 122 28 24 chr6 43842691 43846510 -105670527 - L1Md_F LINE L1 -1800 4083 240 4 919 223 279 12 37 chr6 43846650 43846732 -105670305 + GA-rich Low_complexity Low_complexity 5 84 0 4 919 384 167 0 0 chr6 43846813 43846885 -105670152 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 919 193 333 45 22 chr6 43848962 43849051 -105667986 - L3 LINE CR1 -113 4376 4286 4 919 183 80 0 0 chr6 43849084 43849109 -105667928 + (TAAG)n Simple_repeat Simple_repeat 3 27 0 4 919 6017 47 15 12 chr6 43849254 43849973 -105667064 - L1Md_F2 LINE L1 0 6582 5862 4 919 1674 156 13 142 chr6 43850185 43850558 -105666479 - RMER19B LTR ERVK -572 330 6 4 919 225 0 0 0 chr6 43851009 43851034 -105666003 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 919 2568 203 4 15 chr6 43852074 43852548 -105664489 - Lx5 LINE L1 -153 6897 6429 4 919 392 179 0 78 chr6 43852536 43852651 -105664386 + Lx4B LINE L1 6948 7053 -5 4 919 22 56 0 0 chr6 43853000 43853036 -105664001 + AT_rich Low_complexity Low_complexity 1 36 0 4 919 344 352 83 28 chr6 43853327 43853581 -105663456 - L1MD2 LINE L1 -246 6113 5846 4 919 537 194 206 0 chr6 43855406 43855566 -105661471 - L1_Mur3 LINE L1 -2784 3096 2904 5 919 38567 50 10 15 chr6 43855563 43861827 -105655210 - L1Md_A LINE L1 0 6582 348 5 919 3164 181 74 16 chr6 43861834 43862526 -105654511 - L1_Mur3 LINE L1 -2965 2915 2184 5 919 4565 131 30 13 chr6 43862526 43863237 -105653800 + RMER16-int LTR ERVK 722 1444 -3962 5 919 2175 248 94 11 chr6 43863228 43864070 -105652967 + MuRRS4-int LTR ERV1 760 1671 -3392 5 919 925 9 18 0 chr6 43864070 43864184 -105652853 + (GA)n Simple_repeat Simple_repeat 1 116 0 5 919 6649 146 25 39 chr6 43864252 43866395 -105650642 + MuRRS4-int LTR ERV1 1300 4271 -792 5 919 1085 202 26 0 chr6 43866386 43866614 -105650423 + MuRRS4-int LTR ERV1 4788 5021 -42 5 919 4168 87 21 23 chr6 43866615 43867180 -105649857 + LTRIS2 LTR ERV1 1 564 0 5 919 430 156 13 0 chr6 43867180 43867257 -105649780 - L1_Mur3 LINE L1 -3703 2177 2100 5 919 207 0 0 0 chr6 43867269 43867292 -105649745 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 919 994 158 0 0 chr6 43867293 43867451 -105649586 - B2_Mm2 SINE B2 -37 158 1 5 919 375 23 0 0 chr6 43867504 43867548 -105649489 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 919 1272 168 52 0 chr6 43867551 43867801 -105649236 - L1_Mur3 LINE L1 -3868 2012 1750 5 919 1711 254 58 23 chr6 43867810 43868241 -105648796 - RLTR41 LTR ERV1 0 446 1 5 919 3407 189 27 18 chr6 43868242 43869340 -105647697 - L1_Mur3 LINE L1 -4146 1734 625 5 919 2395 246 41 28 chr6 43869353 43869934 -105647103 + RMER20B LTR ERVK 17 605 -22 5 919 1782 258 21 7 chr6 43869954 43870419 -105646618 - L1_Mur3 LINE L1 -7106 622 151 5 919 1139 96 18 0 chr6 43870419 43870586 -105646451 - RLTR1B LTR ERV1 0 512 343 5 919 826 69 17 0 chr6 43870590 43870706 -105646331 - RLTR1B LTR ERV1 -102 410 293 5 919 15537 230 21 39 chr6 43870707 43875615 -105641422 - MMERGLN-int LTR ERV1 -2731 5047 1 5 919 2815 71 152 142 chr6 43875615 43876122 -105640915 - RLTR1B LTR ERV1 0 512 1 5 919 504 208 0 0 chr6 43876122 43876218 -105640819 - L1_Mur3 LINE L1 -7090 622 527 5 919 1640 228 4 84 chr6 43876547 43877001 -105640036 + L1_Mur3 LINE L1 4833 5250 -630 5 919 1867 71 12 4 chr6 43877611 43877852 -105639185 - L1_Mus2 LINE L1 0 6566 6324 5 919 4235 94 79 17 chr6 43878058 43878751 -105638286 - RMER17A LTR ERVK -15 736 1 5 919 25 51 0 0 chr6 43878770 43878809 -105638228 + AT_rich Low_complexity Low_complexity 1 39 0 5 919 30 0 0 0 chr6 43878956 43878986 -105638051 + AT_rich Low_complexity Low_complexity 1 30 0 5 919 937 286 17 54 chr6 43879298 43879594 -105637443 - B4A SINE B4 -3 289 5 5 919 547 140 0 20 chr6 43880743 43880845 -105636192 - URR1B DNA MER1_type 0 225 126 5 919 799 233 66 125 chr6 43880845 43880943 -105636094 + RLTR23 LTR ERV1 2 96 -334 5 919 1113 81 0 0 chr6 43880943 43881079 -105635958 + B1_Mus1 SINE Alu 1 136 -12 5 919 424 32 32 0 chr6 43881082 43881144 -105635893 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 5 919 799 233 66 125 chr6 43881144 43881330 -105635707 + RLTR23 LTR ERV1 97 273 -157 5 919 1543 185 4 4 chr6 43881310 43881571 -105635466 + RLTR23 LTR ERV1 168 428 -2 5 919 316 117 0 62 chr6 43881573 43881637 -105635400 - URR1B DNA MER1_type -95 130 71 5 919 368 373 84 11 chr6 43882188 43882462 -105634575 + Charlie1a DNA MER1_type 3 296 -1159 5 919 581 307 62 73 chr6 43882491 43882779 -105634258 - B4 SINE B4 -6 286 2 5 919 758 352 64 3 chr6 43882936 43883312 -105633725 + Charlie1a DNA MER1_type 386 784 -671 5 919 250 306 122 16 chr6 43883441 43883564 -105633473 + B1F SINE Alu 7 142 -7 5 919 304 283 80 0 chr6 43883642 43883755 -105633282 + Charlie1a DNA MER1_type 1009 1130 -325 5 919 2408 230 108 25 chr6 43884057 43884781 -105632256 - RMER1B Other Other -1 1065 311 5 919 361 358 58 29 chr6 43884853 43885161 -105631876 - ERVL-E-int LTR ERVL -3940 1727 1411 5 919 1380 286 51 8 chr6 43885663 43886033 -105631004 - MTD LTR MaLR -14 405 20 5 919 278 267 129 29 chr6 43886050 43886220 -105630817 - MTD-int LTR MaLR -4 1254 1068 5 919 3539 201 28 5 chr6 43886220 43886894 -105630143 - Lx5 LINE L1 -574 6476 5787 5 919 1530 257 69 30 chr6 43886890 43887389 -105629648 + Lx5 LINE L1 6498 7051 -7 5 919 22 0 0 0 chr6 43887389 43887411 -105629626 + AT_rich Low_complexity Low_complexity 1 22 0 5 919 1082 70 0 0 chr6 43887416 43887558 -105629479 - L1Md_F2 LINE L1 0 6582 6441 5 919 397 75 0 0 chr6 43887558 43887611 -105629426 + L1_Mus1 LINE L1 6374 6426 -141 5 919 2459 274 104 63 chr6 43887611 43888630 -105628407 - MTD-int LTR MaLR -196 1062 2 5 919 1529 223 77 19 chr6 43888643 43889009 -105628028 - MTD LTR MaLR -14 405 19 5 919 2733 98 32 5 chr6 43889818 43890228 -105626809 + BGLII LTR ERVK 1 421 0 5 919 235 312 13 13 chr6 43890357 43890435 -105626602 - LTR16E1 LTR ERVL -164 374 297 5 919 250 350 66 51 chr6 43890959 43891292 -105625745 - L2a LINE L2 -1 3425 3046 5 919 1850 211 21 42 chr6 43891486 43891916 -105625121 + MTC LTR MaLR 1 421 0 5 919 871 50 0 0 chr6 43892038 43892157 -105624880 + L1Md_A LINE L1 6464 6582 0 5 919 553 341 99 63 chr6 43892577 43893003 -105624034 - MLT1D LTR MaLR -10 495 55 5 919 6602 192 93 39 chr6 43893944 43896707 -105620330 - L1_Mur3 LINE L1 -2676 3204 286 5 919 25 65 0 0 chr6 43896742 43896788 -105620249 + AT_rich Low_complexity Low_complexity 1 46 0 5 919 2670 64 6 0 chr6 43896914 43897259 -105619778 + L1Md_F2 LINE L1 6233 6579 -3 5 919 31960 62 3 2 chr6 43897263 43901796 -105615241 + L1Md_A LINE L1 1049 5586 -297 5 919 8468 32 1 0 chr6 43901796 43902791 -105614246 + L1Md_A LINE L1 5587 6582 0 5 919 464 17 0 0 chr6 43902799 43902859 -105614178 + L1_Mm LINE L1 3970 4029 -1854 5 919 11966 68 7 1 chr6 43902859 43904511 -105612526 + L1Md_F2 LINE L1 3925 5586 -297 5 919 7998 47 2 5 chr6 43904512 43905508 -105611529 + L1Md_F2 LINE L1 5588 6580 -2 5 919 324 293 0 11 chr6 43905518 43905649 -105611388 + Lx6 LINE L1 6932 7072 -624 5 919 396 0 0 0 chr6 43906528 43906572 -105610465 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 114 37090 32 4 6 chr6 43906609 43912788 -105604249 - L1Md_A LINE L1 -1 6581 422 5 920 1336 308 41 37 chr6 43913844 43914525 -105602512 + Lx8 LINE L1 6774 7457 -16 5 920 257 238 32 0 chr6 43915097 43915160 -105601877 + LTR68 LTR ERV1 676 740 0 5 920 6916 84 5 17 chr6 43915998 43917110 -105599927 + L1_Mus2 LINE L1 5470 6566 0 5 920 22 0 0 0 chr6 43917260 43917282 -105599755 + AT_rich Low_complexity Low_complexity 1 22 0 5 920 239 351 81 46 chr6 43917299 43917472 -105599565 - B3A SINE B2 -12 186 8 5 920 681 107 0 0 chr6 43917491 43917603 -105599434 - Lx3_Mus LINE L1 -4 7005 6894 5 920 450 241 114 0 chr6 43917629 43917756 -105599281 - B1_Mur4 SINE Alu -8 142 1 5 920 932 66 49 0 chr6 43917855 43917977 -105599060 + B1_Mm SINE Alu 9 136 -11 5 920 252 0 0 0 chr6 43917977 43918005 -105599032 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 920 25 51 0 0 chr6 43918369 43918408 -105598629 + AT_rich Low_complexity Low_complexity 1 39 0 5 920 430 348 43 33 chr6 43918507 43918718 -105598319 + B3 SINE B2 1 213 -3 5 920 233 315 0 40 chr6 43920207 43920283 -105596754 + ID4_ SINE ID 4 76 -7 5 920 438 65 0 0 chr6 43920287 43920349 -105596688 + (CAAAC)n Simple_repeat Simple_repeat 5 66 0 5 920 261 0 0 0 chr6 43920680 43920709 -105596328 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 5 920 545 271 93 45 chr6 43920850 43921140 -105595897 + Zaphod2 DNA Tip100 3195 3498 -26 5 920 33 80 0 0 chr6 43921245 43921320 -105595717 + AT_rich Low_complexity Low_complexity 1 75 0 5 920 316 259 17 51 chr6 43921357 43921469 -105595568 - L1M5 LINE L1 -2335 3811 3703 5 920 636 14 0 0 chr6 43921469 43921542 -105595495 + (TCCC)n Simple_repeat Simple_repeat 2 74 0 5 920 670 321 24 31 chr6 43921570 43921859 -105595178 - B4A SINE B4 -3 289 3 5 920 243 0 0 0 chr6 43921966 43921993 -105595044 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 920 7807 39 8 1 chr6 43922031 43923106 -105593931 - L1Md_F2 LINE L1 -2 6580 5499 5 920 376 267 45 22 chr6 43923228 43923362 -105593675 - RMER15 LTR ERVL -43 532 396 5 920 363 310 71 33 chr6 43923494 43923831 -105593206 - L1M5 LINE L1 -2146 4000 3651 5 920 493 316 67 35 chr6 43923923 43924205 -105592832 - B4A SINE B4 0 292 2 5 920 7358 70 9 3 chr6 43924726 43925993 -105591044 - L1_Mus1 LINE L1 -2 6565 5289 5 920 15027 140 35 22 chr6 43925991 43929580 -105587457 - L1_Mus1 LINE L1 -2061 3822 184 5 920 3320 78 2 0 chr6 43929604 43930038 -105586999 - L1_Mus2 LINE L1 0 6566 6132 5 920 3845 97 0 0 chr6 43930038 43930664 -105586373 + L1_Mus2 LINE L1 5526 6498 -502 5 920 207 0 0 0 chr6 43930711 43930734 -105586303 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 920 3577 158 40 17 chr6 43930984 43931630 -105585407 + Lx2B LINE L1 6335 6995 -5 5 920 22 35 0 0 chr6 43931956 43931985 -105585052 + AT_rich Low_complexity Low_complexity 1 29 0 5 920 1672 182 118 36 chr6 43932007 43932372 -105584665 + RMER10B LTR ERVL 1 395 -3 5 920 1457 179 138 3 chr6 43933583 43933908 -105583129 - ORR1C1 LTR MaLR -9 369 1 5 920 264 59 0 0 chr6 43934165 43934199 -105582838 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 920 210 100 50 0 chr6 43934399 43934439 -105582598 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 5 920 2986 32 0 9 chr6 43934538 43934887 -105582150 + ORR1A0 LTR MaLR 1 346 0 5 920 260 274 157 113 chr6 43934904 43935019 -105582018 - PB1D7 SINE Alu 0 120 1 5 920 221 316 66 44 chr6 43935774 43935805 -105581232 - B2_Mm1a SINE B2 -5 188 3 5 920 634 270 26 20 chr6 43935805 43935956 -105581081 - RSINE1 SINE B4 -10 155 4 5 920 210 91 0 0 chr6 43936544 43936577 -105580460 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 920 709 135 0 12 chr6 43936736 43936901 -105580136 + (CA)n Simple_repeat Simple_repeat 2 164 0 5 920 34906 34 11 11 chr6 43938255 43939905 -105577132 - L1Md_T LINE L1 0 6582 4914 5 920 242 167 46 77 chr6 43939905 43939970 -105577067 + RMER20A LTR ERVK 186 248 -268 5 920 34906 34 11 11 chr6 43939970 43943635 -105573402 - L1Md_T LINE L1 0 4913 1203 5 920 9455 8 0 0 chr6 43943601 43944668 -105572369 - L1Md_Gf LINE L1 -5380 1142 76 5 920 674 58 0 19 chr6 43944695 43944800 -105572237 + (CAAAA)n Simple_repeat Simple_repeat 3 105 0 5 920 2794 310 46 13 chr6 43944809 43945838 -105571199 - Lx8 LINE L1 -153 7320 6258 5 920 530 344 67 50 chr6 43947078 43947371 -105569666 - B4 SINE B4 -11 281 12 5 920 596 276 52 67 chr6 43947425 43947771 -105569266 - Lx7 LINE L1 0 7696 7356 5 920 1185 110 27 27 chr6 43947778 43947965 -105569072 + B2_Mm2 SINE B2 1 187 -8 5 920 1025 124 66 27 chr6 43947978 43948161 -105568876 + B2_Mm2 SINE B2 6 195 0 5 920 209 161 0 0 chr6 43948214 43948245 -105568792 + (CAG)n Simple_repeat Simple_repeat 1 31 0 6 920 369 218 26 0 chr6 43948246 43948324 -105568713 - Lx7 LINE L1 -371 7325 7246 5 920 6855 245 53 16 chr6 43948508 43950354 -105566683 - Lx7 LINE L1 -437 7259 5326 5 920 1490 197 13 13 chr6 43950354 43950663 -105566374 - Lx2 LINE L1 -14 6983 6675 6 920 3486 249 88 80 chr6 43950663 43950919 -105566118 - Lx7 LINE L1 -555 5325 5065 5 920 348 24 0 0 chr6 43950919 43950960 -105566077 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 920 3486 249 88 80 chr6 43950960 43951855 -105565182 - Lx7 LINE L1 -816 5064 4197 5 920 353 301 66 31 chr6 43952013 43952239 -105564798 - L1M5 LINE L1 -2572 3574 3341 6 920 4625 172 17 9 chr6 43952934 43954390 -105562647 + Lx4A LINE L1 416 1882 -3995 6 920 765 101 0 0 chr6 43954397 43954506 -105562531 - RLTR11B LTR ERVK -13 440 332 6 920 5968 193 107 11 chr6 43954508 43954788 -105562249 + Lx4A LINE L1 4335 4631 -1255 6 920 261 0 0 0 chr6 43954788 43954817 -105562220 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 920 8716 145 15 12 chr6 43954817 43957003 -105560034 + Lx4A LINE L1 4632 6955 -103 6 920 4270 73 3 16 chr6 43957003 43957574 -105559463 - LTRIS2 LTR ERV1 0 564 1 6 920 8716 155 20 14 chr6 43957574 43957684 -105559353 + Lx4A LINE L1 6956 7058 0 6 920 22 70 0 0 chr6 43957703 43957746 -105559291 + AT_rich Low_complexity Low_complexity 1 43 0 6 920 438 69 0 0 chr6 43957819 43957877 -105559160 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 920 331 334 61 53 chr6 43957881 43958133 -105558904 - B4A SINE B4 -25 267 12 6 920 375 278 23 53 chr6 43958366 43958499 -105558538 - ID_B1 SINE B4 0 224 96 6 920 4480 130 24 3 chr6 43958847 43959563 -105557474 - Lx LINE L1 0 6654 5924 6 920 301 275 55 55 chr6 43959640 43959767 -105557270 + L1MD LINE L1 3073 3199 -2947 6 920 1978 228 30 5 chr6 43959770 43960206 -105556831 + Lx7 LINE L1 6919 7365 -331 6 920 540 304 18 53 chr6 43961703 43961873 -105555164 + RSINE1 SINE B4 2 165 0 6 920 270 267 26 71 chr6 43964692 43964805 -105552232 - Lx9 LINE L1 -152 7492 7385 6 920 795 380 19 34 chr6 43964857 43965274 -105551763 + MTE-int LTR MaLR 1087 1497 -83 6 920 647 339 15 72 chr6 43965274 43965538 -105551499 + MTEa LTR MaLR 27 275 -104 6 920 281 367 48 32 chr6 43966180 43966296 -105550741 + B4 SINE B4 100 217 -75 6 920 531 0 0 0 chr6 43966296 43966355 -105550682 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6 920 180 0 0 0 chr6 43967518 43967538 -105549499 + (A)n Simple_repeat Simple_repeat 1 20 0 6 920 2893 172 35 39 chr6 43967762 43968331 -105548706 - Lx3C LINE L1 -789 6187 5621 6 920 2186 197 62 14 chr6 43968321 43968840 -105548197 + Lx3C LINE L1 6447 6998 -2 6 920 285 29 0 0 chr6 43969666 43969700 -105547337 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 920 865 263 99 54 chr6 43970568 43970922 -105546115 + ORR1D2 LTR MaLR 1 370 0 6 920 21 36 0 0 chr6 43971114 43971142 -105545895 + AT_rich Low_complexity Low_complexity 1 28 0 6 920 3989 153 119 4 chr6 43971161 43972161 -105544876 + L1_Mur2 LINE L1 429 1551 -4326 6 920 3011 131 250 13 chr6 43972151 43972763 -105544274 + L1_Mur2 LINE L1 1821 2577 -3300 6 920 1764 153 116 23 chr6 43972764 43973118 -105543919 + L1VL2 LINE L1 283 669 -5666 6 920 16588 126 9 8 chr6 43973200 43976459 -105540578 + L1_Mus3 LINE L1 667 3937 -1946 6 920 7764 66 6 2 chr6 43976454 43977707 -105539330 + L1_Mus1 LINE L1 5312 6567 0 6 920 12329 129 7 4 chr6 43977704 43978518 -105538519 + L1_Mus3 LINE L1 3922 4734 -1149 6 920 246 32 0 0 chr6 43978518 43978549 -105538488 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 920 12329 125 12 5 chr6 43978549 43980443 -105536594 + L1_Mus3 LINE L1 4735 6636 -2 6 920 3483 120 24 19 chr6 43980432 43981027 -105536010 + L1_Mur2 LINE L1 2556 3153 -2724 6 920 2980 164 78 14 chr6 43981016 43981590 -105535447 + Lx4A LINE L1 6448 7058 0 6 920 631 146 0 0 chr6 43982235 43982338 -105534699 - RLTR26 LTR ERVK 0 642 540 6 920 565 232 0 55 chr6 43982306 43982452 -105534585 - RLTR26 LTR ERVK -504 138 1 6 920 213 94 0 0 chr6 43983752 43983784 -105533253 + (CATA)n Simple_repeat Simple_repeat 4 35 0 6 920 276 120 0 0 chr6 43983877 43983927 -105533110 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 920 4529 76 25 2 chr6 43984613 43985222 -105531815 - L1_Mus3 LINE L1 -5 6633 6011 6 920 3385 75 30 1 chr6 43985223 43985862 -105531175 + L1_Mus3 LINE L1 5386 6045 -593 6 920 1906 174 72 40 chr6 43985939 43986340 -105530697 + MTC LTR MaLR 6 419 -2 6 920 231 36 0 0 chr6 43986901 43986929 -105530108 + (T)n Simple_repeat Simple_repeat 1 28 0 6 920 1003 72 65 0 chr6 43986929 43987067 -105529970 - B1_Mm SINE Alu 0 147 1 6 920 652 326 53 32 chr6 43987189 43987436 -105529601 - Tigger7 DNA MER2_type -2183 308 57 6 920 709 320 120 32 chr6 43988300 43988674 -105528363 + Tigger8 DNA MER2_type 2 408 -258 6 920 212 255 0 0 chr6 43989440 43989491 -105527546 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 6 920 228 222 18 18 chr6 43989492 43989547 -105527490 - Lx8 LINE L1 -150 7323 7269 6 920 1017 0 0 0 chr6 43990259 43990372 -105526665 + (TCTCC)n Simple_repeat Simple_repeat 4 116 0 6 920 444 19 0 0 chr6 43990404 43990457 -105526580 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 920 453 149 35 18 chr6 43991072 43991206 -105525831 + (TCTA)n Simple_repeat Simple_repeat 4 141 0 6 920 333 0 0 0 chr6 43991206 43991243 -105525794 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 920 673 118 51 21 chr6 43991243 43991573 -105525464 + (TCTA)n Simple_repeat Simple_repeat 1 339 0 6 920 1117 68 7 0 chr6 43992292 43992438 -105524599 - B1_Mus1 SINE Alu 0 148 2 6 920 4248 51 0 8 chr6 43992458 43992991 -105524046 - L1Md_F3 LINE L1 -1 6583 6055 6 920 2326 11 0 0 chr6 43992991 43993256 -105523781 + L1Md_F3 LINE L1 5638 5902 -682 6 920 943 145 6 6 chr6 43993358 43993531 -105523506 + GA-rich Low_complexity Low_complexity 2 174 0 6 920 405 0 0 0 chr6 43993551 43993596 -105523441 + (GAAA)n Simple_repeat Simple_repeat 4 48 0 6 920 869 108 13 20 chr6 43993755 43993906 -105523131 + L1Md_F2 LINE L1 6431 6580 -2 6 920 1048 294 102 62 chr6 43994195 43994229 -105522808 + L1M2 LINE L1 4554 4586 -1557 6 920 2656 82 18 170 chr6 43994229 43994789 -105522248 + IAPLTR2_Mm LTR ERVK 1 475 0 6 920 1048 294 102 62 chr6 43994789 43995126 -105521911 + L1M2 LINE L1 4587 4913 -1230 6 920 1485 60 16 0 chr6 43995126 43995310 -105521727 + B2_Mm2 SINE B2 3 189 -6 6 920 1048 294 170 47 chr6 43995310 43995885 -105521152 + L1M2 LINE L1 4914 5588 -709 6 920 3943 1 0 0 chr6 43995877 43996445 -105520592 - L1Md_A LINE L1 -557 6025 5458 6 920 4750 4 0 0 chr6 43996445 43996972 -105520065 + L1Md_A LINE L1 6056 6582 0 6 920 421 320 5 24 chr6 43996978 43997186 -105519851 + L1M2 LINE L1 5571 5774 -526 6 920 267 216 148 0 chr6 43997215 43997303 -105519734 - MTEa LTR MaLR 0 379 279 6 920 533 55 14 0 chr6 43997469 43997542 -105519495 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 920 363 309 118 27 chr6 43997794 43997980 -105519057 - MT2A LTR ERVL -90 443 241 6 920 2680 233 51 45 chr6 43998009 43998674 -105518363 - RMER1C Other Other -25 1317 649 6 920 421 415 58 58 chr6 43999209 43999623 -105517414 - LTR16A LTR ERVL -34 417 4 6 920 499 111 25 0 chr6 43999918 43999999 -105517038 + RMER19A LTR ERVK 14 96 -641 6 920 3748 138 61 2 chr6 44000000 44000604 -105516433 + RMER19A LTR ERVK 98 737 0 1 920 4403 65 0 0 chr6 44001515 44002071 -105514966 + L1_Mm LINE L1 5053 5608 -275 2 920 243 317 55 31 chr6 44002558 44002685 -105514352 - LTR82B Low_complexity ERVL -389 441 312 3 920 384 22 0 0 chr6 44002872 44002917 -105514120 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 920 372 376 12 6 chr6 44002978 44003141 -105513896 - MER20 DNA MER1_type -52 167 4 5 920 1275 205 146 142 chr6 44003529 44003574 -105513463 - MT2B LTR ERVL 0 601 562 6 920 372 43 0 0 chr6 44003574 44003620 -105513417 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 920 204 40 0 0 chr6 44003620 44003644 -105513393 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 920 1275 205 146 142 chr6 44003644 44004195 -105512842 - MT2B LTR ERVL -40 561 3 6 920 38 0 0 0 chr6 44004371 44004409 -105512628 + AT_rich Low_complexity Low_complexity 1 38 0 9 920 1127 88 0 0 chr6 44004409 44004556 -105512481 - B1_Mus2 SINE Alu 0 147 1 1 920 183 167 0 0 chr6 44005792 44005834 -105511203 + T-rich Low_complexity Low_complexity 1 42 0 1 920 370 354 30 60 chr6 44006458 44006756 -105510281 - L1MC4 LINE L1 -1073 6969 6681 1 920 727 142 7 7 chr6 44007164 44007299 -105509738 + CT-rich Low_complexity Low_complexity 4 138 0 1 920 270 0 0 0 chr6 44007299 44007329 -105509708 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 920 271 136 61 0 chr6 44007823 44007889 -105509148 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 1 920 498 291 109 33 chr6 44008985 44009287 -105507750 - Zaphod DNA Tip100 -99 3932 3608 1 920 22 35 0 0 chr6 44009302 44009331 -105507706 + AT_rich Low_complexity Low_complexity 1 29 0 1 920 544 284 118 53 chr6 44009533 44010023 -105507014 - Zaphod DNA Tip100 -3150 881 360 1 920 274 381 25 25 chr6 44010184 44010305 -105506732 - Zaphod DNA Tip100 -3899 132 12 1 920 3600 87 8 14 chr6 44010935 44011446 -105505591 - L1_Mus2 LINE L1 0 6566 6059 1 920 23 33 0 0 chr6 44011651 44011681 -105505356 + AT_rich Low_complexity Low_complexity 1 30 0 1 920 320 360 29 0 chr6 44012230 44012366 -105504671 + ID_B1 SINE B4 84 223 -1 2 920 8095 49 2 1 chr6 44012503 44013731 -105503306 - L1Md_F2 LINE L1 -1 6581 5351 2 920 211 250 33 43 chr6 44013838 44013930 -105503107 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 2 920 420 190 140 0 chr6 44014285 44014385 -105502652 - B1_Mus2 SINE Alu 0 147 34 2 920 2769 209 32 20 chr6 44014673 44015258 -105501779 + Lx2B LINE L1 6389 6980 -20 2 920 21 0 0 0 chr6 44015504 44015525 -105501512 + AT_rich Low_complexity Low_complexity 1 21 0 2 920 621 49 0 0 chr6 44015535 44015616 -105501421 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 920 522 0 0 0 chr6 44015616 44015673 -105501364 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 920 582 276 19 68 chr6 44016330 44016536 -105500501 + B3A SINE B2 2 197 -1 2 920 468 0 0 0 chr6 44017278 44017330 -105499707 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 920 577 283 186 8 chr6 44017684 44017937 -105499100 - Kanga2_a DNA Tc2 -284 604 307 3 920 232 284 95 77 chr6 44018018 44018186 -105498851 + MLT1J1 LTR MaLR 59 229 -215 3 920 549 307 77 19 chr6 44018598 44018807 -105498230 - Kanga2_a DNA Tc2 -663 225 5 3 920 838 333 98 25 chr6 44019402 44019842 -105497195 - MT2A LTR ERVL 0 533 62 3 920 460 341 98 6 chr6 44019896 44020079 -105496958 - ORR1E LTR MaLR -151 208 9 3 920 585 318 55 37 chr6 44020088 44020415 -105496622 + L1ME2 LINE L1 5832 6164 0 3 920 660 365 88 36 chr6 44021023 44021544 -105495493 + MLT2B3 LTR ERVL 1 548 -6 3 920 359 329 112 76 chr6 44021529 44021571 -105495466 + B4A SINE B4 22 61 -231 3 920 252 86 0 0 chr6 44021571 44021606 -105495431 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 3 920 359 329 112 76 chr6 44021606 44021787 -105495250 + B4A SINE B4 62 253 -39 3 920 195 129 0 0 chr6 44021824 44021855 -105495182 + (T)n Simple_repeat Simple_repeat 1 31 0 3 920 1170 55 0 0 chr6 44021855 44022001 -105495036 - B1_Mus2 SINE Alu 0 147 2 3 920 246 284 15 15 chr6 44023335 44023403 -105493634 + MLT1J1 LTR MaLR 74 141 -303 4 920 182 346 90 48 chr6 44023637 44023804 -105493233 + L2a LINE L2 3253 3426 0 4 920 246 62 0 0 chr6 44025025 44025057 -105491980 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 4 920 464 312 17 45 chr6 44025064 44025242 -105491795 + B3 SINE B2 33 205 -11 4 920 1560 216 92 3 chr6 44026966 44027314 -105489723 - RLTR14 LTR ERV1 -3 379 1 4 920 327 25 0 0 chr6 44027612 44027652 -105489385 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 920 657 304 147 20 chr6 44027654 44027946 -105489091 - Lx8 LINE L1 -9 7464 7136 4 920 4263 216 58 43 chr6 44027956 44029067 -105487970 - Lx5 LINE L1 -3 7047 5920 4 920 405 211 11 11 chr6 44029074 44029165 -105487872 - Lx8 LINE L1 -379 7094 7004 4 920 411 21 0 0 chr6 44029680 44029728 -105487309 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 920 467 299 54 34 chr6 44029744 44029893 -105487144 - B3A SINE B2 -25 173 22 4 920 828 261 35 0 chr6 44030997 44031200 -105485837 + B3 SINE B2 1 210 -6 5 920 274 353 20 0 chr6 44031461 44031563 -105485474 - ORR1E LTR MaLR 0 359 256 5 920 365 281 12 0 chr6 44032042 44032124 -105484913 + ID4 SINE ID 1 83 0 5 920 233 321 50 144 chr6 44032864 44033086 -105483951 - Tigger15a DNA TcMar 0 715 515 5 920 3092 46 48 0 chr6 44034184 44034576 -105482461 - RLTR10A LTR ERVK 0 411 1 5 920 2640 120 7 12 chr6 44034603 44035024 -105482013 - L1_Mus3 LINE L1 0 6638 6220 5 920 272 0 0 0 chr6 44035024 44035054 -105481983 + L1_Mus2 LINE L1 6196 6225 -341 5 920 373 333 35 65 chr6 44035054 44035224 -105481813 - ORR1E LTR MaLR -194 165 1 5 920 1774 93 35 0 chr6 44035894 44036152 -105480885 + Lx3_Mus LINE L1 6735 7001 -8 5 920 296 363 73 33 chr6 44036330 44036575 -105480462 - MLT1C LTR MaLR -25 442 188 5 920 354 344 58 36 chr6 44036565 44036788 -105480249 - MLT1C-int LTR MaLR -500 871 644 5 920 2979 81 5 2 chr6 44037579 44037974 -105479063 + MTA_Mm LTR MaLR 1 396 0 5 920 624 123 0 48 chr6 44038243 44038430 -105478607 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 6 920 283 408 10 0 chr6 44038520 44038618 -105478419 - B1F2 SINE Alu -46 103 5 6 920 835 123 202 6 chr6 44039960 44040123 -105476914 + B2_Mm2 SINE B2 1 195 0 6 921 256 195 25 25 chr6 44040544 44040623 -105476414 + GA-rich Low_complexity Low_complexity 6 84 0 6 921 379 330 135 68 chr6 44041227 44041656 -105475381 - LTR86A2 LTR ERVL -25 483 26 6 921 28 71 0 0 chr6 44041745 44041801 -105475236 + AT_rich Low_complexity Low_complexity 1 56 0 6 921 412 291 80 64 chr6 44041876 44042063 -105474974 + MTD LTR MaLR 20 209 -210 6 921 270 206 53 27 chr6 44042087 44042162 -105474875 - MERVL-int LTR ERVL -958 4527 4451 6 921 617 250 51 16 chr6 44042165 44042315 -105474722 + MTD LTR MaLR 268 405 -14 6 921 23 33 0 0 chr6 44042621 44042651 -105474386 + AT_rich Low_complexity Low_complexity 1 30 0 6 921 405 297 36 9 chr6 44042767 44042879 -105474158 - PB1D10 SINE Alu -1 116 2 6 921 600 27 0 0 chr6 44043895 44043969 -105473068 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 921 599 322 47 50 chr6 44043987 44044290 -105472747 - B4 SINE B4 -6 286 2 7 921 205 337 12 35 chr6 44045503 44045589 -105471448 - L2b LINE L2 0 3375 3292 7 921 454 286 140 0 chr6 44046558 44046729 -105470308 - B3 SINE B2 -2 214 20 7 921 318 384 0 0 chr6 44046735 44046868 -105470169 - B1F1 SINE Alu -14 135 3 7 921 621 0 0 0 chr6 44047161 44047230 -105469807 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 7 921 429 70 0 0 chr6 44047230 44047287 -105469750 + (TC)n Simple_repeat Simple_repeat 1 57 0 7 921 982 75 8 0 chr6 44047292 44047425 -105469612 - B1_Mus1 SINE Alu -14 134 1 7 921 1276 284 66 3 chr6 44048226 44048576 -105468461 - MTE2b LTR MaLR -7 372 1 7 921 24 32 0 0 chr6 44048706 44048737 -105468300 + AT_rich Low_complexity Low_complexity 1 31 0 7 921 342 327 112 36 chr6 44050341 44050617 -105466420 + L2a LINE L2 3020 3316 -110 8 921 372 119 0 0 chr6 44050633 44050692 -105466345 + (TC)n Simple_repeat Simple_repeat 1 59 0 8 921 685 110 17 0 chr6 44050692 44050810 -105466227 + (TCTA)n Simple_repeat Simple_repeat 2 121 0 8 921 349 341 53 12 chr6 44050828 44050997 -105466040 - B3A SINE B2 -18 180 5 8 921 279 54 0 0 chr6 44051201 44051238 -105465799 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 921 452 312 18 9 chr6 44051328 44051438 -105465599 + B1F SINE Alu 1 111 -38 8 921 243 0 0 0 chr6 44051876 44051903 -105465134 + (T)n Simple_repeat Simple_repeat 1 27 0 8 921 8826 132 23 12 chr6 44052197 44053891 -105463146 - Lx2 LINE L1 -1 6996 5281 8 921 5383 178 24 7 chr6 44053894 44054936 -105462101 + Lx2 LINE L1 4203 5262 -615 8 921 4375 20 0 0 chr6 44056668 44057161 -105459876 + MT2_Mm LTR ERVL 1 493 0 8 921 47809 16 0 0 chr6 44057161 44062520 -105454517 + MERVL-int LTR ERVL 1 5360 -125 8 921 392 167 46 35 chr6 44062520 44062607 -105454430 + ORR1A3-int LTR MaLR 553 640 -1323 8 921 314 0 0 0 chr6 44062607 44062645 -105454392 + MERVL-int LTR ERVL 5448 5485 0 8 921 4389 18 0 0 chr6 44062645 44063138 -105453899 + MT2_Mm LTR ERVL 1 493 0 8 921 38 42 0 27 chr6 44063650 44063685 -105453352 + AT_rich Low_complexity Low_complexity 1 35 0 9 921 1077 153 0 6 chr6 44063685 44063862 -105453175 + B2_Mm2 SINE B2 1 176 -19 9 921 38 42 0 27 chr6 44063862 44063900 -105453137 + AT_rich Low_complexity Low_complexity 1 37 0 9 921 3012 14 0 0 chr6 44063967 44064313 -105452724 - L1Md_A LINE L1 0 6582 6237 9 921 330 300 95 21 chr6 44066350 44066540 -105450497 + MER58A DNA MER1_type 18 224 0 9 921 1101 306 82 42 chr6 44066644 44067303 -105449734 + Lx9 LINE L1 6960 7644 0 9 921 2041 106 92 0 chr6 44067886 44068235 -105448802 - Lx LINE L1 0 6654 6274 9 921 368 35 53 0 chr6 44068237 44068294 -105448743 - L1Md_T LINE L1 -1 6581 6522 9 921 405 134 48 24 chr6 44068901 44068985 -105448052 + Lx7 LINE L1 7611 7696 0 9 921 393 332 68 142 chr6 44069551 44069860 -105447177 - B4A SINE B4 -5 287 2 9 921 299 292 17 26 chr6 44070156 44070272 -105446765 + Lx8 LINE L1 7352 7466 -7 1 921 351 0 0 0 chr6 44070703 44070742 -105446295 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 921 384 22 0 0 chr6 44070934 44070979 -105446058 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 921 333 0 0 0 chr6 44071001 44071038 -105445999 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 921 301 336 28 0 chr6 44071711 44071818 -105445219 - L3 LINE CR1 -880 3609 3500 1 921 301 358 0 0 chr6 44071920 44072015 -105445022 - L3 LINE CR1 -995 3494 3400 1 921 3455 70 2 26 chr6 44073288 44073793 -105443244 - L1_Mus1 LINE L1 0 6567 6102 1 921 925 138 6 12 chr6 44073870 44074039 -105442998 + CT-rich Low_complexity Low_complexity 3 170 0 1 921 243 0 0 0 chr6 44074067 44074094 -105442943 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 921 1014 123 32 0 chr6 44074094 44074249 -105442788 - B2_Mm1t SINE B2 -33 160 1 1 921 338 331 101 7 chr6 44074258 44074407 -105442630 - RSINE1 SINE B4 0 165 3 1 921 311 336 82 7 chr6 44074419 44074566 -105442471 - L1M5 LINE L1 -398 5781 5624 1 921 603 82 10 0 chr6 44075050 44075148 -105441889 + L1_Mus2 LINE L1 6467 6565 -1 1 921 447 288 56 0 chr6 44075434 44075559 -105441478 - B1F2 SINE Alu -5 144 13 1 921 24 32 0 0 chr6 44076182 44076213 -105440824 + AT_rich Low_complexity Low_complexity 1 31 0 1 921 216 86 0 0 chr6 44076278 44076313 -105440724 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 921 7621 100 70 15 chr6 44076313 44077525 -105439512 - Lx3_Mus LINE L1 -21 6988 5710 1 921 3537 118 7 2 chr6 44077528 44078069 -105438968 + Lx3_Mus LINE L1 5172 5715 -171 1 921 841 290 71 3 chr6 44078100 44078120 -105438917 + L1M2 LINE L1 5256 5275 -1022 1 921 207 0 0 0 chr6 44078120 44078143 -105438894 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 921 841 290 71 3 chr6 44078143 44078458 -105438579 + L1M2 LINE L1 5276 5613 -684 1 921 286 289 0 0 chr6 44078472 44078548 -105438489 + Lx8 LINE L1 7046 7121 -352 1 921 39 38 0 0 chr6 44079200 44079253 -105437784 + AT_rich Low_complexity Low_complexity 1 53 0 1 921 218 350 42 8 chr6 44079696 44079814 -105437223 + MER5B DNA MER1_type 6 127 -51 1 921 324 130 0 0 chr6 44080128 44080197 -105436840 + (A)n Simple_repeat Simple_repeat 1 69 0 1 921 201 74 0 0 chr6 44080405 44080432 -105436605 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1 921 451 356 44 37 chr6 44081471 44081766 -105435271 + MLT1A0 LTR MaLR 1 297 -68 1 921 1563 255 75 3 chr6 44081801 44082174 -105434863 + MTD LTR MaLR 13 412 -7 1 921 217 308 88 34 chr6 44082235 44082383 -105434654 + MIRb SINE MIR 92 247 -21 1 921 212 318 29 29 chr6 44083211 44083279 -105433758 + MIR SINE MIR 63 130 -78 1 921 344 307 88 29 chr6 44084836 44085007 -105432030 + MER3 DNA MER1_type 8 188 -21 1 921 558 71 0 0 chr6 44086265 44086349 -105430688 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 921 297 0 0 0 chr6 44087245 44087278 -105429759 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 921 554 217 31 0 chr6 44087510 44087639 -105429398 + ORR1D1 LTR MaLR 1 133 -241 1 921 1057 110 0 0 chr6 44089460 44089605 -105427432 + B1_Mus1 SINE Alu 4 148 0 1 921 291 114 0 0 chr6 44089605 44089649 -105427388 + (A)n Simple_repeat Simple_repeat 1 44 0 1 921 244 133 0 43 chr6 44089685 44089732 -105427305 + Lx8 LINE L1 6234 6278 -1195 1 921 2286 106 117 0 chr6 44089856 44090224 -105426813 - IAPLTR2_Mm LTR ERVK 0 411 1 1 921 6059 42 5 12 chr6 44090226 44090975 -105426062 - IAPEz-int LTR ERVK -2 6479 5736 1 921 2107 79 0 14 chr6 44090974 44091256 -105425781 - IAPEz-int LTR ERVK -4845 1636 1359 1 921 3588 79 19 38 chr6 44091256 44091909 -105425128 - IAPEz-int LTR ERVK -5819 662 168 1 921 237 327 0 0 chr6 44091909 44091964 -105425073 - RLTR27 LTR ERVK -34 275 221 1 921 1035 78 25 113 chr6 44091964 44092167 -105424870 - IAPEz-int LTR ERVK -6288 193 9 1 921 2697 78 161 0 chr6 44092168 44092577 -105424460 - IAPLTR2_Mm LTR ERVK 0 475 1 1 921 833 327 78 41 chr6 44092577 44093039 -105423998 + Lx8 LINE L1 6444 6922 -551 1 921 205 176 0 0 chr6 44093129 44093163 -105423874 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 921 498 178 412 7 chr6 44093575 44093728 -105423309 - B3 SINE B2 0 216 2 1 921 909 323 70 87 chr6 44094655 44095171 -105421866 + MLT2B2 LTR ERVL 1 507 -8 1 921 276 330 41 27 chr6 44095423 44095644 -105421393 - L1_Mur1 LINE L1 -1850 4296 4047 1 921 890 204 94 0 chr6 44095684 44095885 -105421152 - Lx9 LINE L1 -442 7202 6983 1 921 335 321 118 38 chr6 44095923 44096237 -105420800 - L1M5 LINE L1 -2451 3695 3357 1 921 286 300 107 26 chr6 44096426 44096772 -105420265 - L1M5 LINE L1 -3019 3127 2754 1 921 510 125 0 11 chr6 44100172 44100261 -105416776 - Lx3A LINE L1 -1002 5979 5892 1 921 6340 127 6 13 chr6 44100263 44101269 -105415768 + Lx3A LINE L1 5975 6973 -8 1 921 234 81 0 0 chr6 44101277 44101314 -105415723 + (A)n Simple_repeat Simple_repeat 1 37 0 1 921 11512 25 0 4 chr6 44101547 44102918 -105414119 - L1Md_T LINE L1 -678 5205 3841 1 921 3211 14 0 0 chr6 44102917 44103284 -105413753 + L1Md_T LINE L1 5220 5586 -297 1 921 8917 6 0 3 chr6 44103284 44104283 -105412754 + L1Md_T LINE L1 5587 6582 0 1 921 21 0 0 0 chr6 44104543 44104564 -105412473 + AT_rich Low_complexity Low_complexity 1 21 0 1 921 22 0 0 0 chr6 44104680 44104702 -105412335 + AT_rich Low_complexity Low_complexity 1 22 0 1 921 21 57 0 0 chr6 44106562 44106597 -105410440 + AT_rich Low_complexity Low_complexity 1 35 0 1 921 214 354 136 35 chr6 44107105 44107562 -105409475 + L2 LINE L2 1811 2313 -1106 1 921 2212 281 118 105 chr6 44107976 44108863 -105408174 - L1Md_F2 LINE L1 -2 7458 6518 1 921 8143 72 19 8 chr6 44108863 44110666 -105406371 - L1Md_F2 LINE L1 0 6582 4795 1 921 1137 215 31 7 chr6 44110660 44110951 -105406086 + L1_Mur3 LINE L1 1568 1865 -4015 1 921 2096 133 45 3 chr6 44111082 44111426 -105405611 - L1_Mus3 LINE L1 0 6638 6280 1 921 601 13 13 13 chr6 44111426 44111505 -105405532 + (TTTC)n Simple_repeat Simple_repeat 1 79 0 1 921 3302 65 2 0 chr6 44111508 44111925 -105405112 - L1_Mus1 LINE L1 0 6567 6150 1 921 488 147 0 0 chr6 44111925 44112000 -105405037 - L1_Mus3 LINE L1 -370 6268 6194 1 921 22 35 0 0 chr6 44112311 44112340 -105404697 + AT_rich Low_complexity Low_complexity 1 29 0 1 921 257 51 26 0 chr6 44113053 44113092 -105403945 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 921 837 256 44 8 chr6 44113221 44113473 -105403564 - Lx7 LINE L1 -1694 6002 5742 1 921 1371 189 22 83 chr6 44113512 44113836 -105403201 + MT2A LTR ERVL 1 304 -229 1 921 405 0 0 0 chr6 44113845 44113890 -105403147 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 921 383 142 67 12 chr6 44113890 44114054 -105402983 + (TA)n Simple_repeat Simple_repeat 2 174 0 1 921 340 261 167 18 chr6 44114187 44114355 -105402682 + L1M5 LINE L1 4483 4675 -1471 1 921 1792 166 60 93 chr6 44114378 44114777 -105402260 + ORR1B1 LTR MaLR 1 386 -8 1 921 492 193 0 0 chr6 44114910 44115024 -105402013 + (TA)n Simple_repeat Simple_repeat 2 115 0 1 921 219 312 0 12 chr6 44115025 44115106 -105401931 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 921 429 20 0 0 chr6 44115503 44115553 -105401484 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1 921 3364 94 16 16 chr6 44115558 44116053 -105400984 - Lx LINE L1 -20 6634 6140 1 921 876 270 85 15 chr6 44116062 44116461 -105400576 - L1MC3 LINE L1 -85 7700 7274 1 921 292 289 13 0 chr6 44116487 44116563 -105400474 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 921 333 405 20 35 chr6 44116598 44116795 -105400242 - L1MC3 LINE L1 -960 6825 6632 1 921 304 250 26 0 chr6 44117160 44117236 -105399801 + ID4_ SINE ID 3 80 -3 1 921 1038 304 57 23 chr6 44117244 44117681 -105399356 + Lx8 LINE L1 6887 7338 -135 1 921 792 203 67 53 chr6 44117934 44118142 -105398895 - Lx2B LINE L1 -1 6999 6789 1 921 24 0 0 0 chr6 44118217 44118241 -105398796 + AT_rich Low_complexity Low_complexity 1 24 0 1 921 3997 91 3 19 chr6 44118368 44118942 -105398095 - L1Md_F2 LINE L1 -13 6569 6005 1 921 8235 16 0 0 chr6 44118942 44119878 -105397159 - L1Md_A LINE L1 -1 6581 5646 1 921 4646 80 3 0 chr6 44119878 44120632 -105396405 - L1Md_F2 LINE L1 -581 6001 5246 1 921 5271 34 2 0 chr6 44120632 44121259 -105395778 - L1Md_T LINE L1 -1 6581 5954 1 921 13252 30 7 0 chr6 44121260 44122876 -105394161 + L1Md_T LINE L1 4294 5920 -662 1 921 29021 84 17 9 chr6 44122875 44127674 -105389363 - L1Md_F2 LINE L1 -627 5256 415 1 921 210 143 0 0 chr6 44128030 44128065 -105388972 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 921 655 261 34 6 chr6 44128093 44128270 -105388767 - B3A SINE B2 -16 182 1 1 921 1014 91 0 0 chr6 44128604 44128747 -105388290 + (TTC)n Simple_repeat Simple_repeat 2 144 0 1 921 24 67 0 0 chr6 44129031 44129076 -105387961 + AT_rich Low_complexity Low_complexity 1 45 0 1 921 919 262 9 19 chr6 44129138 44129352 -105387685 + B3 SINE B2 2 213 -3 1 921 336 254 15 92 chr6 44131187 44131301 -105385736 + RMER5 LTR ERV1 1 111 -423 1 921 2848 46 57 0 chr6 44131301 44131668 -105385369 - RLTR10 LTR ERVK -2 388 1 1 921 405 102 0 0 chr6 44131668 44131727 -105385310 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1 921 336 254 15 92 chr6 44131727 44131741 -105385296 + RMER5 LTR ERV1 112 119 -415 1 921 269 192 0 0 chr6 44131729 44131781 -105385256 + ORR1A4 LTR MaLR 276 327 -2 1 921 790 285 99 24 chr6 44131803 44132167 -105384870 + RMER5 LTR ERV1 123 516 -18 1 921 204 40 0 0 chr6 44132167 44132192 -105384845 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 921 189 222 44 0 chr6 44132446 44132491 -105384546 + MIRb SINE MIR 184 230 -38 1 921 192 77 0 0 chr6 44132776 44132802 -105384235 + (A)n Simple_repeat Simple_repeat 1 26 0 1 921 258 340 101 25 chr6 44133286 44133485 -105383552 + LTR16A1 LTR ERVL 230 443 -13 1 921 225 0 0 0 chr6 44133509 44133534 -105383503 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 921 308 403 8 25 chr6 44133852 44133974 -105383063 - ID_B1 SINE B4 -15 209 90 1 921 723 194 108 14 chr6 44135667 44135881 -105381156 + Lx9 LINE L1 7410 7643 -1 1 921 1100 63 21 0 chr6 44136176 44136319 -105380718 + B1_Mus1 SINE Alu 3 148 0 1 921 191 32 65 0 chr6 44136324 44136355 -105380682 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 921 315 307 60 38 chr6 44136664 44136847 -105380190 - L1MCc LINE L1 -6100 323 137 1 921 417 81 0 0 chr6 44136929 44136991 -105380046 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 921 594 385 71 8 chr6 44137058 44137325 -105379712 - B4A SINE B4 -8 284 1 1 921 249 286 0 0 chr6 44138283 44138332 -105378705 - PB1D9 SINE Alu -70 50 2 1 921 647 331 66 77 chr6 44138429 44138792 -105378245 + MLT1A0 LTR MaLR 6 364 -1 1 921 392 209 11 95 chr6 44139394 44139489 -105377548 - MTEa LTR MaLR -290 89 3 1 921 702 326 117 59 chr6 44140023 44140681 -105376356 - MER67C LTR ERV1 -6 705 10 1 921 193 324 27 45 chr6 44141392 44141502 -105375535 - L3 LINE CR1 -880 3609 3502 2 921 24 32 0 0 chr6 44141657 44141688 -105375349 + AT_rich Low_complexity Low_complexity 1 31 0 2 921 646 297 36 32 chr6 44142108 44142327 -105374710 + ID_B1 SINE B4 2 221 -3 2 921 24 0 0 0 chr6 44142871 44142895 -105374142 + AT_rich Low_complexity Low_complexity 1 24 0 2 921 23 33 0 0 chr6 44143222 44143252 -105373785 + AT_rich Low_complexity Low_complexity 1 30 0 2 921 801 251 93 82 chr6 44143410 44143945 -105373092 - L1MA4 LINE L1 -394 5906 5366 2 921 402 57 0 0 chr6 44144024 44144077 -105372960 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 921 432 0 0 0 chr6 44144300 44144348 -105372689 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 921 3176 190 21 27 chr6 44144575 44145202 -105371835 + RLTR17 LTR ERVK 1 623 -69 2 921 246 283 0 0 chr6 44145299 44145359 -105371678 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 921 507 322 32 28 chr6 44146139 44146391 -105370646 + Lx7 LINE L1 5616 5868 -1828 2 921 261 321 0 28 chr6 44146539 44146648 -105370389 + GA-rich Low_complexity Low_complexity 3 108 0 2 921 484 299 30 0 chr6 44147594 44147728 -105369309 + B1F SINE Alu 4 141 -8 2 921 1055 270 69 11 chr6 44147772 44148120 -105368917 + ORR1D2 LTR MaLR 3 370 0 2 921 641 274 25 13 chr6 44148162 44148321 -105368716 - B3 SINE B2 -9 207 47 2 921 198 91 0 0 chr6 44148347 44148380 -105368657 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 921 1742 289 91 14 chr6 44150183 44150802 -105366235 + Lx8 LINE L1 6808 7473 0 2 921 1163 306 50 5 chr6 44153348 44153745 -105363292 + Lx8 LINE L1 6584 6998 -475 2 921 234 200 109 0 chr6 44153794 44153849 -105363188 - RLTR25A LTR ERVK -349 679 619 2 921 496 224 0 50 chr6 44153836 44153897 -105363140 - ORR1A3-int LTR MaLR -1077 886 697 2 921 524 254 42 0 chr6 44153897 44154015 -105363022 - B1_Mus2 SINE Alu -22 125 3 2 921 1121 192 62 62 chr6 44154015 44154243 -105362794 - MT2B LTR ERVL -342 259 32 2 921 496 224 0 50 chr6 44154015 44154035 -105363002 - ORR1A3-int LTR MaLR -1077 696 628 2 921 1832 194 12 55 chr6 44154267 44154662 -105362375 - RLTR25A LTR ERVK -580 523 146 2 921 2250 95 6 9 chr6 44154662 44154992 -105362045 + ORR1A1 LTR MaLR 3 331 -15 2 921 392 309 0 0 chr6 44154992 44155086 -105361951 - RLTR25A LTR ERVK -960 143 50 2 921 664 323 92 15 chr6 44155094 44155430 -105361607 + Lx8 LINE L1 7010 7371 -102 2 921 948 250 172 0 chr6 44155873 44156182 -105360855 + ORR1D2 LTR MaLR 6 368 -2 2 921 671 371 83 35 chr6 44156969 44157366 -105359671 + MER77 LTR ERVL 186 601 -6 2 921 1009 256 153 21 chr6 44158844 44159171 -105357866 + ORR1D2 LTR MaLR 1 370 0 2 921 712 219 0 0 chr6 44159205 44159342 -105357695 - RMER6A LTR ERVK 0 756 620 2 921 1893 127 15 27 chr6 44159343 44159674 -105357363 - ORR1A4 LTR MaLR -2 327 1 2 921 6121 157 30 88 chr6 44159674 44159849 -105357188 - ORR1A4-int LTR MaLR 0 1963 1791 2 921 812 32 15 61 chr6 44159849 44159981 -105357056 - L1Md_F3 LINE L1 0 6584 6459 2 921 6121 157 30 88 chr6 44159981 44161128 -105355909 - ORR1A4-int LTR MaLR -173 1790 718 2 921 773 180 226 46 chr6 44161095 44161334 -105355703 - MT2B LTR ERVL -314 287 6 2 921 3426 184 53 22 chr6 44161192 44161511 -105355526 - ORR1A4-int LTR MaLR -1201 762 435 2 921 225 0 0 0 chr6 44161511 44161536 -105355501 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 921 3426 184 53 22 chr6 44161536 44161953 -105355084 - ORR1A4-int LTR MaLR -1529 434 3 2 921 1443 139 137 65 chr6 44161954 44162261 -105354776 - ORR1A4 LTR MaLR 0 329 1 2 921 2204 158 144 9 chr6 44162261 44162769 -105354268 - RMER6A LTR ERVK -131 625 1 2 921 5620 49 49 1 chr6 44162887 44163606 -105353431 - L1Md_F2 LINE L1 -1 6581 5829 2 921 295 261 27 0 chr6 44163675 44163786 -105353251 + (TA)n Simple_repeat Simple_repeat 1 114 0 2 921 22 35 0 0 chr6 44164121 44164150 -105352887 + AT_rich Low_complexity Low_complexity 1 29 0 2 921 232 357 69 30 chr6 44164210 44164412 -105352625 - L2a LINE L2 -12 3414 3205 2 921 189 0 0 0 chr6 44164831 44164852 -105352185 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 921 23 0 0 0 chr6 44164952 44164975 -105352062 + AT_rich Low_complexity Low_complexity 1 23 0 2 921 303 339 17 25 chr6 44165282 44165400 -105351637 - MTEa LTR MaLR -18 361 245 2 921 18695 129 39 20 chr6 44165417 44170285 -105346752 - L1_Mus2 LINE L1 -4 6562 1072 2 921 3634 69 0 18 chr6 44170347 44170836 -105346201 - L1Md_F2 LINE L1 -12 6570 6091 2 115 3791 95 13 14 chr6 44170836 44171389 -105345648 + L1_Mm LINE L1 4590 5141 -742 2 922 2276 158 34 2 chr6 44171381 44171794 -105345243 - L1_Mus2 LINE L1 -5494 1122 697 2 922 277 362 13 13 chr6 44172068 44172219 -105344818 - L1M3e LINE L1 -6879 151 1 2 922 2664 34 9 3 chr6 44173243 44173551 -105343486 + L1Md_F2 LINE L1 6256 6563 -19 2 922 576 0 0 0 chr6 44173551 44173615 -105343422 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 922 2664 34 9 3 chr6 44173615 44173631 -105343406 + L1Md_F2 LINE L1 6564 6582 0 2 922 183 42 0 0 chr6 44174510 44174534 -105342503 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 922 651 262 42 33 chr6 44174762 44174975 -105342062 - B3 SINE B2 0 216 2 2 922 270 95 0 0 chr6 44175402 44175444 -105341593 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 922 3801 66 2 0 chr6 44177213 44177697 -105339340 - L1_Mus1 LINE L1 0 6567 6083 2 922 328 324 56 7 chr6 44178272 44178415 -105338622 + RSINE1 SINE B4 4 153 -12 2 922 23 0 0 0 chr6 44178754 44178777 -105338260 + AT_rich Low_complexity Low_complexity 1 23 0 2 922 853 260 0 117 chr6 44178819 44179041 -105337996 - B3 SINE B2 -4 212 17 2 922 185 0 40 0 chr6 44179791 44179816 -105337221 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 2 922 770 214 124 0 chr6 44179823 44179853 -105337184 - B3 SINE B2 -16 200 150 2 922 477 0 0 0 chr6 44179853 44179906 -105337131 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 922 770 214 124 0 chr6 44179906 44180053 -105336984 - B3 SINE B2 -67 149 2 2 922 203 106 43 0 chr6 44180670 44180717 -105336320 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 2 922 4322 144 60 11 chr6 44181902 44182735 -105334302 + MYSERV16_I-int LTR ERVK 1451 2324 -2 2 922 2219 227 68 19 chr6 44182737 44183253 -105333784 + RLTR20A LTR ERVK 1 541 0 2 922 784 296 69 33 chr6 44184610 44185032 -105332005 + L1MC LINE L1 5387 5823 -521 2 922 399 336 49 0 chr6 44185058 44185180 -105331857 - B4A SINE B4 -12 280 153 2 922 4805 84 6 3 chr6 44185186 44185843 -105331194 + L1_Mus2 LINE L1 5907 6565 -1 2 922 395 364 26 7 chr6 44185873 44186028 -105331009 - B4A SINE B4 -130 162 5 2 922 1369 94 5 0 chr6 44186601 44186792 -105330245 - B2_Mm1a SINE B2 0 193 2 2 922 266 317 95 9 chr6 44187071 44187176 -105329861 + ID_B1 SINE B4 85 198 -26 2 922 1104 190 203 37 chr6 44187242 44187581 -105329456 + ORR1B1 LTR MaLR 29 387 -7 2 922 726 236 56 6 chr6 44187871 44188050 -105328987 + Lx7 LINE L1 352 539 -7189 2 922 1015 244 32 4 chr6 44188039 44188290 -105328747 + Lx7 LINE L1 6141 6398 -1298 2 922 574 72 0 24 chr6 44188276 44188361 -105328676 + MusHAL1 LINE L1 490 572 -2782 2 922 3359 105 16 0 chr6 44188361 44188846 -105328191 + L1_Mus4 LINE L1 6141 6633 -3 2 922 23 0 0 0 chr6 44188848 44188871 -105328166 + AT_rich Low_complexity Low_complexity 1 23 0 2 922 373 242 65 0 chr6 44188905 44189029 -105328008 + Lx6 LINE L1 7329 7460 0 2 922 628 289 71 10 chr6 44190027 44190223 -105326814 - B3 SINE B2 -8 208 1 2 922 1013 307 81 7 chr6 44190223 44190516 -105326521 + MTD LTR MaLR 105 419 0 2 922 230 227 85 15 chr6 44190730 44190860 -105326177 - Lx9 LINE L1 0 7644 7506 2 922 22 0 0 0 chr6 44190998 44191020 -105326017 + AT_rich Low_complexity Low_complexity 1 22 0 2 922 22 0 0 0 chr6 44191457 44191479 -105325558 + AT_rich Low_complexity Low_complexity 1 22 0 2 922 229 208 14 14 chr6 44191673 44191746 -105325291 + GA-rich Low_complexity Low_complexity 4 76 0 2 922 226 206 106 67 chr6 44191967 44192071 -105324966 + Tigger6b DNA MER2_type 163 270 -1327 2 922 2652 38 28 0 chr6 44192204 44192522 -105324515 - IAPLTR2b LTR ERVK 0 327 1 2 922 1437 270 68 27 chr6 44193221 44193672 -105323365 - Lx8 LINE L1 -141 7332 6861 2 922 219 69 0 0 chr6 44193672 44193701 -105323336 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 922 1437 270 68 27 chr6 44193701 44193736 -105323301 - Lx8 LINE L1 -613 6860 6826 2 922 292 154 0 0 chr6 44193854 44193906 -105323131 - Lx8 LINE L1 -666 6807 6756 2 922 486 317 147 33 chr6 44196472 44196805 -105320232 - MLT1E3 LTR MaLR -203 421 51 2 922 356 292 44 100 chr6 44197162 44197322 -105319715 - MLT1E2 LTR MaLR -169 458 308 2 922 464 382 83 10 chr6 44197544 44197832 -105319205 - MER21B LTR ERV1 -259 604 296 2 922 1907 326 88 32 chr6 44198032 44198901 -105318136 + ORR1D2-int LTR MaLR 635 1551 -29 2 922 380 341 37 86 chr6 44198884 44199128 -105317909 + ORR1D2 LTR MaLR 8 239 -131 2 922 225 277 108 0 chr6 44199181 44199246 -105317791 - MTE-int LTR MaLR -499 1081 1010 2 922 244 273 0 15 chr6 44199260 44199327 -105317710 + ORR1D2 LTR MaLR 300 365 -14 2 922 5296 67 36 0 chr6 44199327 44200040 -105316997 + L1Md_F2 LINE L1 4848 5586 -297 2 922 7472 67 10 13 chr6 44200041 44201027 -105316010 + L1Md_F2 LINE L1 5588 6570 -12 2 922 238 311 70 41 chr6 44201041 44201212 -105315825 - L2 LINE L2 -1353 2066 1891 2 922 231 88 0 0 chr6 44201282 44201316 -105315721 + (T)n Simple_repeat Simple_repeat 1 34 0 2 922 249 40 19 57 chr6 44202042 44202095 -105314942 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 2 922 29 60 0 0 chr6 44202974 44203024 -105314013 + AT_rich Low_complexity Low_complexity 1 50 0 2 922 23 54 0 0 chr6 44203091 44203128 -105313909 + AT_rich Low_complexity Low_complexity 1 37 0 2 922 881 250 11 0 chr6 44203291 44203455 -105313582 + ORR1E LTR MaLR 1 164 -195 2 922 1110 78 18 0 chr6 44203455 44203622 -105313415 + (TTC)n Simple_repeat Simple_repeat 1 170 0 2 922 881 250 11 0 chr6 44203622 44203645 -105313392 + ORR1E LTR MaLR 165 189 -170 2 922 315 221 0 0 chr6 44203645 44203731 -105313306 + CT-rich Low_complexity Low_complexity 4 89 0 2 922 323 259 123 0 chr6 44203757 44203838 -105313199 + B1_Mur3 SINE Alu 1 91 -58 2 922 3946 262 9 29 chr6 44203891 44205266 -105311771 - Lx7 LINE L1 -981 6715 5355 2 922 1782 50 0 0 chr6 44205263 44205482 -105311555 + L1Md_T LINE L1 6363 6581 -1 2 922 3762 191 55 21 chr6 44205482 44205912 -105311125 - Lx7 LINE L1 -517 5363 4898 2 922 411 21 0 0 chr6 44205912 44205960 -105311077 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 922 3762 191 55 21 chr6 44205960 44206403 -105310634 - Lx7 LINE L1 -983 4897 4461 2 922 6992 92 19 3 chr6 44206866 44208139 -105308898 + L1_Mus1 LINE L1 5275 6567 0 2 922 362 270 87 50 chr6 44208142 44208384 -105308653 + L1MDa LINE L1 1176 1426 -5207 2 922 625 279 72 78 chr6 44208871 44209407 -105307630 - L1M4b LINE L1 -5073 1831 1294 2 922 361 247 12 0 chr6 44210299 44210380 -105306657 - ORR1D1 LTR MaLR -292 82 1 2 922 516 365 32 22 chr6 44210386 44210663 -105306374 + RMER15 LTR ERVL 294 573 -2 2 922 2580 164 44 63 chr6 44210921 44211461 -105305576 - RLTR26 LTR ERVK -112 530 1 3 922 4922 181 13 25 chr6 44211461 44212534 -105304503 + Lx5 LINE L1 4891 5945 -1105 3 922 867 112 0 0 chr6 44212953 44213087 -105303950 + (TTCC)n Simple_repeat Simple_repeat 1 134 0 3 922 1284 89 0 0 chr6 44213087 44213267 -105303770 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 922 399 194 40 52 chr6 44213267 44213441 -105303596 - RMER17C LTR ERVK -142 268 97 3 922 395 266 0 17 chr6 44213880 44213995 -105303042 - L1MB8 LINE L1 -10 6168 6056 3 922 242 219 301 12 chr6 44214008 44214091 -105302946 + MLT1E3 LTR MaLR 1 107 -517 3 922 271 78 39 0 chr6 44214336 44214387 -105302650 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 3 922 39241 31 2 7 chr6 44214874 44221040 -105295997 - L1Md_T LINE L1 0 6582 449 3 922 297 0 0 0 chr6 44221502 44221535 -105295502 + (TATAA)n Simple_repeat Simple_repeat 4 36 0 3 922 1067 83 7 7 chr6 44222879 44223024 -105294013 - B1_Mus2 SINE Alu 0 147 3 3 922 1630 223 80 0 chr6 44223220 44223570 -105293467 - ORR1B2 LTR MaLR 0 378 1 3 922 3916 254 106 21 chr6 44223570 44224280 -105292757 - ORR1B2-int LTR MaLR 0 1370 651 3 922 530 161 164 35 chr6 44224280 44224396 -105292641 - B1_Mus2 SINE Alu -16 131 1 3 922 3916 254 106 21 chr6 44224396 44224947 -105292090 - ORR1B2-int LTR MaLR -720 650 2 3 922 1743 175 82 35 chr6 44224948 44225291 -105291746 - ORR1B2 LTR MaLR 0 367 9 3 922 4649 108 70 0 chr6 44225466 44226197 -105290840 - L1_Mus1 LINE L1 -937 4946 4165 3 922 7215 96 13 1 chr6 44226197 44227808 -105289229 + L1_Mus1 LINE L1 4936 6566 -1 3 922 386 232 12 0 chr6 44228590 44228672 -105288365 + LSU-rRNA_Hsa rRNA rRNA 334 416 -4619 3 922 1908 326 75 52 chr6 44228758 44229800 -105287237 - ORR1B2-int LTR MaLR -2 1578 460 3 922 1559 6 0 6 chr6 44229800 44229981 -105287056 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 922 1658 338 64 106 chr6 44229981 44230421 -105286616 - ORR1B2-int LTR MaLR -911 459 5 3 922 640 289 41 55 chr6 44230426 44230745 -105286292 - ORR1B2 LTR MaLR -8 371 3 3 922 2444 266 136 25 chr6 44230908 44231022 -105286015 - Lx6 LINE L1 -27 7433 7328 3 922 237 33 0 0 chr6 44231022 44231052 -105285985 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 922 2444 270 116 23 chr6 44231052 44231916 -105285121 - Lx6 LINE L1 -133 7327 6112 3 922 625 294 98 109 chr6 44232103 44232380 -105284657 - MTE2a LTR MaLR -15 364 83 3 922 965 192 52 82 chr6 44232380 44232612 -105284425 - URR1B DNA MER1_type 0 225 1 3 922 625 294 98 109 chr6 44232612 44232700 -105284337 - MTE2a LTR MaLR -297 82 3 3 922 23 33 0 0 chr6 44233498 44233528 -105283509 + AT_rich Low_complexity Low_complexity 1 30 0 3 922 473 212 0 0 chr6 44233762 44233847 -105283190 - RMER6D LTR ERVK -5 715 631 3 922 1987 60 0 0 chr6 44234410 44234660 -105282377 - L1Md_A LINE L1 0 6582 6333 3 922 2814 35 0 0 chr6 44234660 44235001 -105282036 + L1Md_T LINE L1 5687 6027 -555 3 922 225 0 0 0 chr6 44236629 44236654 -105280383 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 922 342 0 0 0 chr6 44236966 44237004 -105280033 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 922 717 345 89 4 chr6 44237277 44237536 -105279501 + B4A SINE B4 10 290 -2 3 922 216 0 0 0 chr6 44238311 44238335 -105278702 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 922 210 225 0 0 chr6 44238770 44238810 -105278227 + (CAA)n Simple_repeat Simple_repeat 3 42 0 3 922 182 309 134 0 chr6 44238908 44239005 -105278032 - L3 LINE CR1 -295 4194 4085 3 922 240 35 0 0 chr6 44239177 44239206 -105277831 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 3 922 414 0 0 0 chr6 44239490 44239536 -105277501 + (TATAA)n Simple_repeat Simple_repeat 4 49 0 3 922 1102 229 30 15 chr6 44239772 44240042 -105276995 + Lx6 LINE L1 7172 7445 -15 3 922 5716 73 12 4 chr6 44240487 44241247 -105275790 + L1Md_F2 LINE L1 5802 6567 -15 3 922 861 179 0 6 chr6 44241265 44241428 -105275609 - Lx LINE L1 -15 6639 6478 3 922 23 68 0 0 chr6 44241530 44241574 -105275463 + AT_rich Low_complexity Low_complexity 1 44 0 3 922 27 29 0 0 chr6 44241732 44241766 -105275271 + AT_rich Low_complexity Low_complexity 1 34 0 3 922 26 50 0 0 chr6 44241890 44241930 -105275107 + AT_rich Low_complexity Low_complexity 1 40 0 3 922 519 95 0 0 chr6 44242017 44242091 -105274946 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 922 406 154 9 43 chr6 44242129 44242244 -105274793 + CT-rich Low_complexity Low_complexity 1 111 0 3 922 848 287 126 83 chr6 44242811 44243614 -105273423 + L1MC2 LINE L1 4800 5643 -701 3 922 1027 102 7 0 chr6 44243614 44243761 -105273276 - B1_Mus1 SINE Alu 0 148 1 3 922 848 279 107 98 chr6 44243761 44244388 -105272649 + L1MC2 LINE L1 5644 6288 -45 3 922 398 333 113 0 chr6 44244800 44244950 -105272087 + MER63A DNA AcHobo 1 167 -43 3 922 402 188 32 57 chr6 44246127 44246251 -105270786 + L1MA8 LINE L1 6166 6286 -5 3 922 599 373 17 34 chr6 44246389 44246686 -105270351 + B4A SINE B4 1 292 0 3 922 656 285 134 32 chr6 44247884 44247970 -105269067 + MTEa LTR MaLR 72 160 -219 3 922 651 13 0 0 chr6 44247970 44248046 -105268991 + (TA)n Simple_repeat Simple_repeat 2 77 0 3 922 656 271 134 27 chr6 44248046 44248233 -105268804 + MTEa LTR MaLR 161 371 -8 3 922 378 286 44 89 chr6 44248427 44248468 -105268569 - CYRA11_Mm Unknown Y-chromosome -256 361 173 3 922 853 178 13 0 chr6 44248468 44248625 -105268412 + URR1A DNA MER1_type 67 225 -1 3 922 523 92 11 11 chr6 44248686 44248774 -105268263 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 922 407 300 25 2 chr6 44248809 44248959 -105268078 - MT2A LTR ERVL -40 544 349 3 922 297 128 0 0 chr6 44249169 44249216 -105267821 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 922 255 202 15 15 chr6 44249356 44249432 -105267605 - L1M3 LINE L1 -522 5775 5700 3 922 984 317 64 18 chr6 44249525 44250173 -105266864 - L1M2 LINE L1 -642 5238 4536 3 922 201 39 0 0 chr6 44250173 44250199 -105266838 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 922 984 307 54 19 chr6 44250199 44250260 -105266777 - L1M2 LINE L1 -1577 4566 4505 3 922 765 331 32 29 chr6 44250280 44250557 -105266480 - MTE2b LTR MaLR -43 336 59 3 922 337 241 46 0 chr6 44250558 44250645 -105266392 - MTE2b LTR MaLR -286 93 3 3 922 1384 308 60 32 chr6 44250651 44251457 -105265580 - L1M2 LINE L1 -1651 4492 3665 3 922 251 71 24 0 chr6 44251475 44251517 -105265520 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 922 309 299 59 17 chr6 44251584 44251703 -105265334 - L1M2 LINE L1 -2556 3587 3464 3 922 233 296 49 0 chr6 44251890 44251971 -105265066 + ORR1E LTR MaLR 256 340 -19 3 922 791 322 73 12 chr6 44252177 44252519 -105264518 + MLT2C1 LTR ERVL 32 394 -3 3 922 381 364 8 0 chr6 44252546 44252678 -105264359 + ID_B1 SINE B4 86 218 -6 3 922 423 0 0 0 chr6 44253341 44253388 -105263649 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 922 403 351 72 19 chr6 44253400 44253609 -105263428 - Lx8 LINE L1 -153 7320 7101 3 922 2019 194 18 23 chr6 44253617 44254359 -105262678 + RMER12 LTR ERVK 1 807 -515 3 922 374 189 40 0 chr6 44254365 44254439 -105262598 + RLTR21 LTR ERVK 1341 1417 -155 3 922 931 343 43 16 chr6 44254572 44255049 -105261988 - Lx8 LINE L1 -621 7075 6587 3 922 32 0 0 0 chr6 44255126 44255158 -105261879 + AT_rich Low_complexity Low_complexity 1 32 0 3 922 3414 182 7 20 chr6 44255509 44256108 -105260929 + RLTR17 LTR ERVK 1 591 -101 3 922 16614 24 1 0 chr6 44256108 44258083 -105258954 - L1_Mm LINE L1 -1795 4088 2113 3 922 1442 24 0 0 chr6 44258083 44258249 -105258788 + L1Md_T LINE L1 5421 5586 -297 3 922 8030 54 0 0 chr6 44258249 44259245 -105257792 + L1Md_T LINE L1 5587 6582 0 3 922 340 272 0 0 chr6 44259254 44259335 -105257702 + RLTR17 LTR ERVK 612 692 0 3 922 275 343 6 6 chr6 44259550 44259717 -105257320 + L1MDa LINE L1 1210 1376 -5257 3 922 183 42 0 0 chr6 44259928 44259952 -105257085 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 922 4006 183 61 1 chr6 44260821 44261621 -105255416 - L1_Mm LINE L1 -479 5404 4557 3 922 559 195 0 17 chr6 44261622 44261742 -105255295 + Lx LINE L1 6524 6641 -13 3 922 335 299 16 8 chr6 44261876 44262004 -105255033 + GA-rich Low_complexity Low_complexity 2 130 0 3 922 432 343 29 14 chr6 44263967 44264177 -105252860 - ID_B1 SINE B4 -10 214 2 3 922 1055 191 73 5 chr6 44264383 44264588 -105252449 + URR1B DNA MER1_type 7 225 0 3 922 5224 116 31 59 chr6 44264626 44265558 -105251479 - RMER17A2 LTR ERVK 0 906 1 3 922 257 274 14 14 chr6 44266304 44266378 -105250659 + PB1D10 SINE Alu 33 106 -11 3 922 284 359 10 10 chr6 44266889 44266993 -105250044 + B1F SINE Alu 1 104 -45 3 922 525 248 88 20 chr6 44267755 44267903 -105249134 - B3 SINE B2 -6 210 53 3 922 1085 108 0 6 chr6 44269157 44269325 -105247712 + (TTC)n Simple_repeat Simple_repeat 3 169 0 3 922 1124 82 0 7 chr6 44269605 44269752 -105247285 + B1_Mus2 SINE Alu 1 146 -1 3 922 260 342 13 0 chr6 44269939 44270018 -105247019 + ID2 SINE ID 3 82 -1 3 922 773 314 137 6 chr6 44270375 44270696 -105246341 - MTEb LTR MaLR -12 367 5 3 922 24 53 0 0 chr6 44271319 44271357 -105245680 + AT_rich Low_complexity Low_complexity 1 38 0 3 922 5517 222 48 24 chr6 44271693 44272411 -105244626 + L1_Mur2 LINE L1 848 1589 -4288 3 922 378 0 0 0 chr6 44272411 44272453 -105244584 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 922 5517 206 82 23 chr6 44272453 44273635 -105243402 + L1_Mur2 LINE L1 1590 2835 -3042 3 922 597 28 0 0 chr6 44273743 44273814 -105243223 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 3 922 4633 117 3 4 chr6 44273826 44274513 -105242524 - L1_Mus3 LINE L1 0 6638 5953 3 922 8337 135 2 37 chr6 44274519 44276071 -105240966 + L1_Mus3 LINE L1 4458 5941 -697 3 922 5325 172 80 109 chr6 44276067 44276782 -105240255 + L1_Mur2 LINE L1 2832 3485 -2392 3 922 306 0 0 0 chr6 44276782 44276816 -105240221 + (CAA)n Simple_repeat Simple_repeat 3 36 0 3 922 5325 172 80 109 chr6 44276816 44277312 -105239725 + L1_Mur2 LINE L1 3486 4043 -1834 3 922 1081 88 0 0 chr6 44277312 44277459 -105239578 + B1_Mus2 SINE Alu 1 147 0 3 922 5325 172 80 109 chr6 44277459 44277732 -105239305 + L1_Mur2 LINE L1 4044 4274 -1603 3 922 3215 194 64 28 chr6 44278615 44279239 -105237798 + L1_Mur2 LINE L1 4646 5288 -589 3 922 198 0 0 0 chr6 44279239 44279261 -105237776 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 922 3215 194 64 28 chr6 44279261 44279417 -105237620 + L1_Mur2 LINE L1 5289 5454 -423 3 922 763 233 51 4 chr6 44279418 44279610 -105237427 + B2_Mm2 SINE B2 2 203 -13 3 922 526 89 22 0 chr6 44279610 44279700 -105237337 + (CATA)n Simple_repeat Simple_repeat 3 94 0 3 922 5429 198 38 15 chr6 44279710 44281202 -105235835 + Lx4B LINE L1 5464 6993 -7 3 922 230 346 29 29 chr6 44281335 44281472 -105235565 - MER46C DNA MER2_type -35 303 167 3 922 25 51 0 0 chr6 44281645 44281684 -105235353 + AT_rich Low_complexity Low_complexity 1 39 0 3 922 28 0 0 0 chr6 44281758 44281786 -105235251 + AT_rich Low_complexity Low_complexity 1 28 0 3 922 1067 274 67 30 chr6 44282038 44282440 -105234597 + MTD LTR MaLR 3 419 0 3 922 24 0 0 0 chr6 44282668 44282692 -105234345 + AT_rich Low_complexity Low_complexity 1 24 0 3 922 1192 269 125 13 chr6 44282865 44283242 -105233795 + MTD LTR MaLR 1 419 0 3 922 8168 168 16 8 chr6 44283841 44286287 -105230750 - Lx4B LINE L1 0 7058 4589 4 922 694 41 20 0 chr6 44288639 44288737 -105228300 + (TC)n Simple_repeat Simple_repeat 1 100 0 4 922 274 297 50 0 chr6 44288855 44288956 -105228081 + MTEb LTR MaLR 273 378 -1 4 922 24 77 0 0 chr6 44290055 44290107 -105226930 + AT_rich Low_complexity Low_complexity 1 52 0 4 922 322 342 25 76 chr6 44290305 44290463 -105226574 - RSINE1 SINE B4 -4 161 12 4 922 1198 102 40 0 chr6 44290516 44290692 -105226345 + B2_Mm2 SINE B2 6 188 -7 4 922 21 57 0 0 chr6 44291261 44291296 -105225741 + AT_rich Low_complexity Low_complexity 1 35 0 4 922 268 361 18 18 chr6 44292730 44292840 -105224197 + ERVL-E-int LTR ERVL 690 799 -4868 4 922 607 276 156 16 chr6 44293185 44293435 -105223602 + Tigger5 DNA MER2_type 2122 2406 0 4 922 836 371 31 44 chr6 44293607 44294128 -105222909 + MTE-int LTR MaLR 1 514 -1066 4 922 4602 100 22 6 chr6 44294478 44294574 -105222463 + Lx2B LINE L1 5199 5298 -588 4 922 198 0 0 0 chr6 44294574 44294596 -105222441 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 922 4602 124 19 5 chr6 44294596 44295292 -105221745 + Lx2B LINE L1 5299 6059 -241 4 922 201 132 0 0 chr6 44295297 44295335 -105221702 + (GAA)n Simple_repeat Simple_repeat 3 40 0 4 922 6161 149 9 17 chr6 44295342 44296399 -105220638 + Lx3A LINE L1 5910 6958 -23 4 922 3438 210 87 27 chr6 44296442 44296566 -105220471 + RMER19B LTR ERVK 56 171 -731 4 922 258 32 0 0 chr6 44296566 44296597 -105220440 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 922 3438 210 87 27 chr6 44296597 44297246 -105219791 + RMER19B LTR ERVK 172 875 -27 4 922 3045 229 47 18 chr6 44297259 44298138 -105218899 + Lx2B LINE L1 6051 6982 -15 4 922 1735 206 62 40 chr6 44298872 44299321 -105217716 + RMER6B LTR ERVK 1 459 -2 4 922 7407 79 11 0 chr6 44299731 44300761 -105216276 + L1_Mus2 LINE L1 5525 6565 -1 4 922 273 324 41 75 chr6 44300770 44300917 -105216120 + B4A SINE B4 78 219 -73 4 922 1084 116 0 0 chr6 44301082 44301228 -105215809 + B1_Mus1 SINE Alu 2 147 -1 4 922 222 222 0 0 chr6 44302228 44302282 -105214755 + A-rich Low_complexity Low_complexity 1 54 0 4 923 1879 166 3 9 chr6 44302502 44302825 -105214212 + Lx2B LINE L1 6676 6996 -4 4 923 22 70 0 0 chr6 44302933 44302976 -105214061 + AT_rich Low_complexity Low_complexity 1 43 0 4 923 27 73 0 0 chr6 44303032 44303087 -105213950 + AT_rich Low_complexity Low_complexity 1 55 0 4 923 210 171 0 24 chr6 44303615 44303657 -105213380 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 923 21 57 0 0 chr6 44303870 44303905 -105213132 + AT_rich Low_complexity Low_complexity 1 35 0 4 923 249 289 60 30 chr6 44304067 44304167 -105212870 - L1M5 LINE L1 -416 5708 5606 4 923 356 317 19 0 chr6 44305309 44305413 -105211624 - PB1D10 SINE Alu -6 111 6 4 923 198 0 0 0 chr6 44305745 44305767 -105211270 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4 923 904 274 102 36 chr6 44306130 44306449 -105210588 + MTD LTR MaLR 81 404 -15 4 923 187 292 42 0 chr6 44306865 44306913 -105210124 + L2 LINE L2 1956 2005 -1414 4 923 222 91 0 0 chr6 44308986 44309019 -105208018 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 923 357 296 355 13 chr6 44309149 44309437 -105207600 + MLT1B LTR MaLR 4 390 0 4 923 31 0 0 0 chr6 44309640 44309671 -105207366 + AT_rich Low_complexity Low_complexity 1 31 0 4 923 22 56 0 0 chr6 44309990 44310026 -105207011 + AT_rich Low_complexity Low_complexity 1 36 0 4 923 517 240 11 0 chr6 44310128 44310303 -105206734 + (TA)n Simple_repeat Simple_repeat 2 178 0 4 923 387 0 0 0 chr6 44310303 44310346 -105206691 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 923 1132 283 58 17 chr6 44310620 44310979 -105206058 + MTEb LTR MaLR 6 379 0 4 923 735 275 53 5 chr6 44311198 44311406 -105205631 + MTC LTR MaLR 15 232 -189 4 923 948 178 0 0 chr6 44312679 44312859 -105204178 + GA-rich Low_complexity Low_complexity 1 180 0 4 923 476 132 12 0 chr6 44314008 44314091 -105202946 + (TA)n Simple_repeat Simple_repeat 1 84 0 4 923 199 50 0 70 chr6 44314930 44314973 -105202064 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 4 923 237 33 0 0 chr6 44315365 44315395 -105201642 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 923 575 303 28 62 chr6 44315442 44315653 -105201384 - B4A SINE B4 -86 206 3 4 923 1044 173 15 0 chr6 44315730 44315932 -105201105 - Lx3B LINE L1 -6 6967 6763 4 923 2583 198 83 22 chr6 44316247 44316565 -105200472 + RMER6C LTR ERVK 1 340 -350 4 923 558 0 0 0 chr6 44316565 44316627 -105200410 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 923 2583 207 66 88 chr6 44316627 44317143 -105199894 + RMER6C LTR ERVK 337 716 -4 4 923 367 358 15 0 chr6 44317947 44318084 -105198953 + Lx8 LINE L1 7112 7250 -223 4 923 3147 182 140 98 chr6 44318084 44318950 -105198087 + RMER19B LTR ERVK 1 902 0 4 923 334 281 12 0 chr6 44318955 44319037 -105198000 + Lx8 LINE L1 7250 7332 -141 4 923 3729 209 47 61 chr6 44319461 44320026 -105197011 - RMER17B LTR ERVK -4 954 430 4 923 846 30 0 0 chr6 44320026 44320127 -105196910 + (GA)n Simple_repeat Simple_repeat 1 101 0 4 923 3729 209 47 61 chr6 44320127 44320529 -105196508 - RMER17B LTR ERVK -529 429 2 4 923 29 28 0 0 chr6 44320610 44320646 -105196391 + AT_rich Low_complexity Low_complexity 1 36 0 4 923 6692 136 35 13 chr6 44320647 44321807 -105195230 - Lx3C LINE L1 -2 6974 5789 4 923 2174 135 32 90 chr6 44321807 44322239 -105194798 - Lx3C LINE L1 -539 5347 4941 4 923 7161 156 20 7 chr6 44322236 44323559 -105193478 + Lx3C LINE L1 3598 4937 -949 4 923 24 32 0 0 chr6 44324458 44324489 -105192548 + AT_rich Low_complexity Low_complexity 1 31 0 4 923 809 263 106 11 chr6 44324555 44324866 -105192171 - ORR1D1 LTR MaLR 0 378 12 4 923 24 32 0 0 chr6 44325832 44325863 -105191174 + AT_rich Low_complexity Low_complexity 1 31 0 4 923 315 85 0 0 chr6 44326110 44326157 -105190880 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 923 235 85 43 0 chr6 44326584 44326631 -105190406 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 4 923 665 314 131 60 chr6 44326714 44326868 -105190169 + MTEa LTR MaLR 18 162 -217 4 923 2351 41 10 0 chr6 44326868 44327159 -105189878 - L1Md_F3 LINE L1 -12 6572 6279 4 923 665 314 131 60 chr6 44327159 44327279 -105189758 + MTEa LTR MaLR 163 305 -74 4 923 213 65 0 0 chr6 44327279 44327310 -105189727 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 4 923 665 314 131 60 chr6 44327310 44327369 -105189668 + MTEa LTR MaLR 306 376 -3 4 923 1731 161 52 0 chr6 44328029 44328334 -105188703 - Lx3C LINE L1 -269 6707 6387 4 923 569 324 21 37 chr6 44328334 44328523 -105188514 + B4A SINE B4 107 292 0 4 923 362 210 8 0 chr6 44328526 44328645 -105188392 + (CA)n Simple_repeat Simple_repeat 2 121 0 4 923 354 323 24 16 chr6 44329266 44329392 -105187645 - LTR33B LTR ERVL -306 197 71 4 923 263 304 91 56 chr6 44329597 44329740 -105187297 + LTR16A LTR ERVL 251 398 -53 4 923 2579 229 41 16 chr6 44330293 44330852 -105186185 + Lx5 LINE L1 6477 7049 -1 4 923 467 325 46 25 chr6 44331080 44331276 -105185761 - ERVL-E-int LTR ERVL -401 5266 5067 4 923 207 133 0 0 chr6 44331482 44331527 -105185510 + (T)n Simple_repeat Simple_repeat 1 45 0 4 923 1171 68 0 0 chr6 44331530 44331677 -105185360 - B1_Mm SINE Alu 0 147 1 4 923 246 298 119 40 chr6 44335012 44335138 -105181899 + MER89 LTR ERV1 424 559 0 4 923 715 295 58 32 chr6 44335632 44335822 -105181215 - MER67C LTR ERV1 0 711 515 4 923 776 11 11 0 chr6 44335822 44335915 -105181122 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 4 923 715 295 58 32 chr6 44335915 44336032 -105181005 - MER67C LTR ERV1 -197 514 396 4 923 297 0 0 0 chr6 44336073 44336106 -105180931 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 923 492 259 50 29 chr6 44336127 44336266 -105180771 - MT2B LTR ERVL -75 526 385 4 923 309 246 0 14 chr6 44336275 44336345 -105180692 - Lx7 LINE L1 -995 6701 6633 4 923 296 270 121 45 chr6 44336490 44336622 -105180415 + MLT1A LTR MaLR 233 374 0 4 923 492 14 87 0 chr6 44336631 44336700 -105180337 + L1Md_F3 LINE L1 6493 6567 -17 4 923 2816 109 7 0 chr6 44337654 44338059 -105178978 + L1_Mus3 LINE L1 6231 6638 0 4 923 234 371 83 68 chr6 44338567 44338871 -105178166 + RSINE1 SINE B4 1 281 -11 4 923 240 352 18 9 chr6 44339197 44339306 -105177731 + L1MD2 LINE L1 19 128 -6419 4 923 345 411 62 4 chr6 44339539 44339783 -105177254 + L1MD2 LINE L1 478 735 -5812 4 923 339 25 0 0 chr6 44340038 44340078 -105176959 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 923 272 314 100 11 chr6 44340387 44340738 -105176299 + L1MD2 LINE L1 1597 1978 -4662 4 923 318 331 74 68 chr6 44340775 44340937 -105176100 + B4A SINE B4 2 164 -128 4 923 233 317 93 64 chr6 44341053 44341225 -105175812 - MLT1E3 LTR MaLR -58 622 446 4 923 266 328 67 26 chr6 44341269 44341422 -105175615 - MLT1E3 LTR MaLR -347 307 105 4 923 593 382 19 15 chr6 44342104 44342370 -105174667 + B4 SINE B4 12 278 -14 4 923 492 18 0 0 chr6 44342395 44342452 -105174585 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 923 587 130 8 0 chr6 44342453 44342576 -105174461 + (GA)n Simple_repeat Simple_repeat 1 124 0 4 923 291 129 69 28 chr6 44342581 44342653 -105174384 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 4 923 1123 133 72 0 chr6 44343248 44343443 -105173594 - L1Md_F2 LINE L1 -1 6581 6373 4 923 1763 41 0 18 chr6 44343443 44343668 -105173369 + L1Md_F2 LINE L1 6138 6358 -224 4 923 231 309 96 43 chr6 44343855 44343970 -105173067 + MTE2a LTR MaLR 65 185 -194 4 923 231 337 19 75 chr6 44343975 44344081 -105172956 + B2_Mm2 SINE B2 4 103 -92 4 923 235 49 0 47 chr6 44344106 44344149 -105172888 + (CAAAC)n Simple_repeat Simple_repeat 1 41 0 4 923 21 0 0 0 chr6 44344189 44344210 -105172827 + AT_rich Low_complexity Low_complexity 1 21 0 4 923 978 255 36 48 chr6 44344239 44344573 -105172464 - Lx7 LINE L1 0 7696 7367 4 923 405 86 0 0 chr6 44344637 44344695 -105172342 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 4 923 6147 253 36 28 chr6 44344722 44344764 -105172273 - Lx7 LINE L1 -392 7304 7268 4 923 3030 188 37 22 chr6 44344764 44345444 -105171593 - RMER6C LTR ERVK 0 690 1 4 923 6147 249 45 35 chr6 44345444 44347219 -105169818 - Lx7 LINE L1 -429 7267 5459 4 923 1093 237 56 25 chr6 44347238 44347577 -105169460 - Lx7 LINE L1 -1252 6221 5875 4 923 233 95 24 0 chr6 44347578 44347620 -105169417 - L1_Mur3 LINE L1 -1587 4293 4251 4 923 3067 196 16 19 chr6 44347652 44348329 -105168708 - L1_Mur3 LINE L1 -1776 4104 3430 4 923 1305 252 58 6 chr6 44348332 44348659 -105168378 - L1_Mur3 LINE L1 -7082 646 303 4 923 394 286 0 150 chr6 44348691 44348831 -105168206 + MTC-int LTR MaLR 343 461 -797 4 923 26 0 0 0 chr6 44349400 44349426 -105167611 + AT_rich Low_complexity Low_complexity 1 26 0 4 923 252 0 0 0 chr6 44349514 44349542 -105167495 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 923 1051 96 0 0 chr6 44349544 44349680 -105167357 - B1_Mm SINE Alu -11 136 1 5 923 876 336 26 53 chr6 44350911 44351213 -105165824 - MTE2b LTR MaLR -68 311 18 5 923 469 287 78 37 chr6 44351432 44351649 -105165388 - Lx8 LINE L1 -2 7471 7246 5 923 25 31 0 0 chr6 44351963 44351995 -105165042 + AT_rich Low_complexity Low_complexity 1 32 0 5 923 13891 179 12 65 chr6 44352446 44356114 -105160923 + Lx2B LINE L1 798 4261 -1625 5 923 8283 169 10 37 chr6 44356126 44356426 -105160611 + Lx2B LINE L1 5501 5790 -96 5 923 1072 75 0 33 chr6 44356426 44356577 -105160460 + B1_Mm SINE Alu 2 147 0 5 923 221 0 0 33 chr6 44356583 44356613 -105160424 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 5 923 8283 155 15 22 chr6 44356613 44357798 -105159239 + Lx2B LINE L1 5788 6980 -20 5 923 248 229 24 12 chr6 44357986 44358070 -105158967 + (TA)n Simple_repeat Simple_repeat 2 86 0 5 923 229 156 0 0 chr6 44359305 44359350 -105157687 - Lx8 LINE L1 -5 7468 7424 5 923 271 343 133 97 chr6 44359792 44360131 -105156906 + ORR1E LTR MaLR 1 351 -8 5 923 237 403 16 57 chr6 44361812 44362004 -105155033 + MLT1E2 LTR MaLR 73 256 -371 5 923 273 319 10 50 chr6 44362325 44362424 -105154613 + B1F SINE Alu 26 120 -29 5 923 652 340 21 21 chr6 44362422 44362659 -105154378 - MTEb LTR MaLR -47 332 96 5 923 25 0 0 0 chr6 44362659 44362684 -105154353 + AT_rich Low_complexity Low_complexity 1 25 0 5 923 467 72 58 0 chr6 44363822 44363891 -105153146 + RMER2 LTR ERV1 3 75 -492 5 923 37955 30 0 0 chr6 44363904 44370546 -105146491 - L1Md_T LINE L1 0 6585 1 5 923 1615 187 110 37 chr6 44370554 44370948 -105146089 + RMER2 LTR ERV1 92 567 0 5 923 291 54 0 0 chr6 44371318 44371355 -105145682 + (TTA)n Simple_repeat Simple_repeat 3 39 0 5 923 227 103 26 0 chr6 44372274 44372313 -105144724 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 5 923 390 42 0 0 chr6 44372355 44372403 -105144634 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 923 555 16 0 0 chr6 44372403 44372466 -105144571 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 923 975 82 0 0 chr6 44373012 44373146 -105143891 + (TTCC)n Simple_repeat Simple_repeat 1 134 0 5 923 248 340 166 42 chr6 44373175 44373488 -105143549 + L2a LINE L2 3058 3409 -17 5 923 24 0 0 0 chr6 44373897 44373921 -105143116 + AT_rich Low_complexity Low_complexity 1 24 0 5 923 945 320 48 45 chr6 44374084 44374441 -105142596 - MTEb LTR MaLR -12 367 10 5 923 31912 87 28 15 chr6 44375277 44377480 -105139557 - L1Md_F2 LINE L1 -1 6581 4390 5 923 747 211 27 145 chr6 44377480 44377845 -105139192 + RLTRETN_Mm LTR ERVK 1 322 0 5 923 31912 92 42 8 chr6 44377845 44381689 -105135348 - L1Md_F2 LINE L1 -1494 4389 378 5 923 590 330 64 39 chr6 44382630 44382863 -105134174 + B4A SINE B4 28 266 -26 5 923 447 19 0 0 chr6 44382868 44382920 -105134117 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 923 4737 101 112 17 chr6 44383045 44384050 -105132987 + L1_Mus3 LINE L1 5106 6191 -447 5 923 2682 41 0 12 chr6 44384081 44384423 -105132614 - L1Md_F3 LINE L1 0 6584 6247 5 923 2644 138 11 11 chr6 44384407 44384862 -105132175 + L1_Mus3 LINE L1 6184 6638 0 5 923 21 0 0 0 chr6 44384862 44384883 -105132154 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 833 198 146 0 chr6 44385311 44385503 -105131534 + URR1B DNA MER1_type 1 220 -5 5 923 310 350 81 40 chr6 44385534 44385683 -105131354 + MLT1A LTR MaLR 219 373 -1 5 923 557 168 183 0 chr6 44386232 44386363 -105130674 - ORR1B1 LTR MaLR -236 158 4 5 923 428 284 164 24 chr6 44386627 44386963 -105130074 + L1M5 LINE L1 5427 5809 -370 5 923 234 0 0 0 chr6 44387235 44387261 -105129776 + (T)n Simple_repeat Simple_repeat 1 26 0 5 923 3344 289 102 26 chr6 44387906 44387943 -105129094 + Tigger1 DNA MER2_type 26 61 -2357 5 923 198 0 0 0 chr6 44387943 44387965 -105129072 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 923 3344 289 102 26 chr6 44387965 44389255 -105127782 + Tigger1 DNA MER2_type 62 1454 -964 5 923 695 294 38 80 chr6 44389871 44390054 -105126983 + Tigger1 DNA MER2_type 1500 1674 -744 5 923 2899 96 7 0 chr6 44390054 44390461 -105126576 + L1_Mus2 LINE L1 6157 6566 0 5 923 695 294 38 80 chr6 44390461 44390650 -105126387 + Tigger1 DNA MER2_type 1675 1856 -562 5 923 410 307 35 42 chr6 44390675 44390818 -105126219 - MTD LTR MaLR -16 403 262 5 923 279 0 0 0 chr6 44390831 44390862 -105126175 + (TTA)n Simple_repeat Simple_repeat 1 31 0 5 923 701 171 0 0 chr6 44390877 44390994 -105126043 + Lx3C LINE L1 6526 6642 -334 5 923 320 338 116 37 chr6 44391074 44391289 -105125748 - MTD LTR MaLR -177 244 13 5 923 577 321 157 50 chr6 44391304 44391800 -105125237 + Tigger1 DNA MER2_type 1867 2415 -3 5 923 6733 62 0 15 chr6 44391839 44392706 -105124331 + L1Md_F2 LINE L1 5717 6570 -12 5 923 510 291 33 55 chr6 44393334 44393355 -105123682 - B3A SINE B2 -14 184 169 5 923 350 42 0 20 chr6 44393355 44393404 -105123633 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 923 568 291 33 55 chr6 44393404 44393564 -105123473 - B3 SINE B2 -30 168 7 5 923 404 309 9 0 chr6 44394968 44395078 -105121959 + PB1D9 SINE Alu 3 113 -7 5 923 475 309 99 5 chr6 44395563 44395755 -105121282 - B3 SINE B2 -5 211 2 5 923 234 0 0 0 chr6 44395906 44395932 -105121105 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 923 525 308 28 0 chr6 44396517 44396660 -105120377 + B3 SINE B2 51 197 -19 5 923 1127 82 0 0 chr6 44398194 44398340 -105118697 + B1_Mm SINE Alu 2 147 0 5 923 230 143 16 0 chr6 44398343 44398406 -105118631 + A-rich Low_complexity Low_complexity 3 66 0 5 923 1759 186 26 0 chr6 44398554 44398861 -105118176 - Lx4A LINE L1 -110 6948 6634 5 923 1118 126 35 0 chr6 44398853 44399027 -105118010 - L1_Mur2 LINE L1 -3090 2787 2608 5 923 241 253 44 33 chr6 44399024 44399114 -105117923 - L1VL4 LINE L1 -5828 474 384 5 923 1775 182 29 0 chr6 44399126 44399473 -105117564 + Lx2B LINE L1 5772 6128 -872 5 923 6146 233 77 34 chr6 44399486 44402398 -105114639 - Lx6 LINE L1 -15 7445 4415 5 923 4500 60 2 0 chr6 44402583 44403151 -105113886 + L1Md_F2 LINE L1 5017 5585 -298 5 923 7844 52 7 2 chr6 44403152 44404131 -105112906 + L1Md_F2 LINE L1 5587 6570 -12 5 923 21 0 0 0 chr6 44405232 44405253 -105111784 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 477 355 99 23 chr6 44405949 44406211 -105110826 - B4A SINE B4 -10 282 1 5 923 254 245 0 0 chr6 44406546 44406599 -105110438 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 923 23 33 0 0 chr6 44406875 44406905 -105110132 + AT_rich Low_complexity Low_complexity 1 30 0 5 923 336 373 75 0 chr6 44406933 44407094 -105109943 - ID_B1 SINE B4 -49 175 3 5 923 239 247 0 45 chr6 44408208 44408297 -105108740 + L1M4 LINE L1 5734 5818 -366 5 923 434 323 40 64 chr6 44409639 44409841 -105107196 - B3A SINE B2 0 198 2 5 923 631 253 25 0 chr6 44409978 44410136 -105106901 - Lx7 LINE L1 0 7696 7535 5 923 3838 212 65 32 chr6 44410147 44411276 -105105761 - Lx7 LINE L1 -1531 6165 5022 5 923 615 62 0 0 chr6 44411276 44411356 -105105681 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 5 923 828 0 0 0 chr6 44411358 44411450 -105105587 + (TTC)n Simple_repeat Simple_repeat 3 94 0 5 923 432 0 0 0 chr6 44411454 44411502 -105105535 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 5 923 522 0 0 0 chr6 44411502 44411559 -105105478 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 5 923 3838 200 74 36 chr6 44411559 44411674 -105105363 - Lx7 LINE L1 -859 5021 4886 5 923 476 296 40 19 chr6 44411674 44411879 -105105158 - RLTR11B LTR ERVK -4 524 284 5 923 738 268 3 78 chr6 44411947 44412226 -105104811 - RLTR11B LTR ERVK -168 273 24 5 923 290 240 79 10 chr6 44412245 44412346 -105104691 - Lx7 LINE L1 -1019 4861 4754 5 923 750 196 0 0 chr6 44412339 44412472 -105104565 - L1_Mur3 LINE L1 -698 5182 5050 5 923 486 49 0 0 chr6 44413079 44413140 -105103897 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 923 249 33 0 0 chr6 44413241 44413271 -105103766 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 923 796 294 39 52 chr6 44413544 44413849 -105103188 + Lx5 LINE L1 6063 6363 -687 5 923 2913 67 12 25 chr6 44413855 44414256 -105102781 - MTA_Mm LTR MaLR 0 396 1 5 923 1417 305 53 24 chr6 44414292 44414802 -105102235 + Lx5 LINE L1 6508 7032 -18 5 923 31 0 0 0 chr6 44414826 44414857 -105102180 + AT_rich Low_complexity Low_complexity 1 31 0 5 923 417 275 17 0 chr6 44415322 44415442 -105101595 + L1VL4 LINE L1 521 642 -5660 5 923 2567 194 39 16 chr6 44415445 44415936 -105101101 + L1_Mur2 LINE L1 1551 2052 -3825 5 923 402 85 0 0 chr6 44415936 44415995 -105101042 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 923 2567 194 39 16 chr6 44415995 44416121 -105100916 + L1_Mur2 LINE L1 2053 2182 -3695 5 923 10179 173 42 29 chr6 44416123 44418277 -105098760 + L1_Mur2 LINE L1 3297 5479 -398 5 923 1517 190 43 87 chr6 44418279 44418694 -105098343 - RLTR25A LTR ERVK -1 1102 706 5 923 286 307 14 54 chr6 44418698 44418846 -105098191 + Lx4B LINE L1 6917 7058 0 5 923 252 278 89 56 chr6 44419063 44419242 -105097795 - B2_Mm2 SINE B2 -10 185 1 5 923 333 0 0 0 chr6 44419499 44419536 -105097501 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 923 21 57 0 0 chr6 44420252 44420287 -105096750 + AT_rich Low_complexity Low_complexity 1 35 0 5 923 327 244 7 89 chr6 44420713 44420848 -105096189 - L1M2 LINE L1 -827 5464 5341 5 923 340 204 120 27 chr6 44420819 44420968 -105096069 - L1MD LINE L1 -777 5369 5195 5 923 313 372 133 0 chr6 44420968 44421148 -105095889 + MTE2a LTR MaLR 14 217 -162 5 923 310 328 62 33 chr6 44421346 44421586 -105095451 - L1M3e LINE L1 -6773 257 11 5 923 1779 201 97 3 chr6 44422092 44422452 -105094585 + ORR1B1 LTR MaLR 1 394 0 5 923 218 322 79 22 chr6 44422719 44422808 -105094229 + PB1D10 SINE Alu 11 104 -13 5 923 8112 45 2 0 chr6 44422811 44423920 -105093117 - L1Md_F2 LINE L1 -12 6570 5459 5 923 603 193 8 8 chr6 44424085 44424205 -105092832 - MTC LTR MaLR -301 120 1 5 923 270 0 0 0 chr6 44425126 44425156 -105091881 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 923 604 73 0 52 chr6 44425156 44425261 -105091776 - L1Md_F2 LINE L1 -10 6572 6472 5 923 331 268 0 0 chr6 44426353 44426435 -105090602 - L1M4 LINE L1 -1812 4334 4253 5 923 3331 41 17 2 chr6 44426436 44426851 -105090186 - L1Md_F3 LINE L1 -13 6571 6151 5 923 261 0 0 0 chr6 44427011 44427040 -105089997 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 923 414 0 0 0 chr6 44427050 44427096 -105089941 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 923 22 0 0 0 chr6 44427173 44427195 -105089842 + AT_rich Low_complexity Low_complexity 1 22 0 5 923 249 167 0 0 chr6 44427471 44427525 -105089512 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 923 217 277 23 57 chr6 44427780 44427868 -105089169 + ID_B1 SINE B4 77 161 -63 6 923 384 228 69 10 chr6 44427797 44427899 -105089138 + PB1D10 SINE Alu 9 116 -1 6 923 186 43 0 0 chr6 44427910 44427933 -105089104 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 923 798 289 171 28 chr6 44428325 44428788 -105088249 - RLTR40 LTR ERVK -107 710 182 6 923 627 81 0 0 chr6 44428788 44428874 -105088163 + (TC)n Simple_repeat Simple_repeat 1 86 0 6 923 3044 249 43 25 chr6 44428878 44429542 -105087495 - Lx6 LINE L1 -6 7454 6740 6 923 414 0 0 0 chr6 44429542 44429588 -105087449 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 923 3044 253 68 9 chr6 44429588 44430060 -105086977 - Lx6 LINE L1 -721 6739 6238 6 923 284 253 83 60 chr6 44430060 44430144 -105086893 + PB1D10 SINE Alu 5 90 -27 6 923 603 283 67 21 chr6 44430150 44430238 -105086799 + Lx6 LINE L1 5981 6071 -1389 6 923 288 0 0 0 chr6 44430238 44430270 -105086767 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 923 531 0 0 0 chr6 44430272 44430331 -105086706 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 923 603 283 67 21 chr6 44430331 44430477 -105086560 + Lx6 LINE L1 6072 6227 -1233 6 923 331 312 47 54 chr6 44430479 44430628 -105086409 - RLTR40 LTR ERVK -650 167 20 6 923 757 188 168 20 chr6 44431487 44431683 -105085354 + URR1B DNA MER1_type 1 225 0 6 923 292 340 44 81 chr6 44432230 44432390 -105084647 - B3 SINE B2 -6 210 57 6 924 380 333 65 5 chr6 44433417 44433616 -105083421 - B3 SINE B2 -5 211 1 6 924 312 27 0 0 chr6 44434089 44434126 -105082911 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 924 230 0 33 0 chr6 44434693 44434723 -105082314 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 924 245 184 0 0 chr6 44434783 44434821 -105082216 + tRNA-Met_ tRNA tRNA 1 38 -38 6 924 950 218 31 44 chr6 44436310 44436536 -105080501 + URR1B DNA MER1_type 2 224 -1 6 924 883 244 5 63 chr6 44436973 44437196 -105079841 + B3 SINE B2 1 210 -6 6 924 744 321 29 12 chr6 44437196 44437439 -105079598 - Lx8 LINE L1 -151 7322 7076 6 924 267 31 0 0 chr6 44437541 44437573 -105079464 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 924 3274 35 8 12 chr6 44437581 44437983 -105079054 + L1Md_F3 LINE L1 6171 6570 -14 6 924 850 224 9 49 chr6 44438111 44438336 -105078701 - B3 SINE B2 0 216 1 6 924 1091 96 0 0 chr6 44438461 44438607 -105078430 - B1_Mm SINE Alu 0 147 2 6 924 24621 98 2 17 chr6 44440611 44446841 -105070196 - L1Md_F2 LINE L1 0 6582 578 6 924 539 158 38 30 chr6 44446981 44447112 -105069925 - RMER1B Other Other -5 1061 930 6 924 2367 35 0 3 chr6 44447095 44447382 -105069655 + L1Md_T LINE L1 5301 5586 -297 6 924 8776 13 0 4 chr6 44447383 44448382 -105068655 + L1Md_T LINE L1 5588 6582 0 6 924 25 0 0 0 chr6 44448383 44448408 -105068629 + AT_rich Low_complexity Low_complexity 1 25 0 6 924 237 279 139 0 chr6 44448415 44448494 -105068543 + MLT1A0 LTR MaLR 51 140 -225 6 924 582 15 0 0 chr6 44448501 44448568 -105068469 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 924 324 307 92 23 chr6 44448610 44448740 -105068297 + MLT1A0 LTR MaLR 218 356 -9 6 924 307 294 90 90 chr6 44448752 44449029 -105068008 + L1MC4 LINE L1 103 379 -5836 6 924 180 0 0 0 chr6 44449143 44449163 -105067874 + (A)n Simple_repeat Simple_repeat 1 20 0 6 924 1243 308 11 11 chr6 44451313 44451677 -105065360 + MTE2b LTR MaLR 3 366 -13 6 924 312 91 0 0 chr6 44451947 44451991 -105065046 + (A)n Simple_repeat Simple_repeat 1 44 0 6 924 229 355 64 11 chr6 44451994 44452088 -105064949 - MLT1H-int LTR MaLR -294 1115 1017 6 924 180 77 0 0 chr6 44452208 44452234 -105064803 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 924 201 74 0 0 chr6 44452296 44452323 -105064714 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 6 924 647 254 37 31 chr6 44452611 44452738 -105064299 - RLTR25B LTR ERVK 0 1103 975 6 924 846 30 0 0 chr6 44452738 44452839 -105064198 + (TC)n Simple_repeat Simple_repeat 1 101 0 6 924 647 246 193 0 chr6 44452839 44452939 -105064098 - RLTR25B LTR ERVK -129 974 913 6 924 1021 203 102 69 chr6 44453028 44453361 -105063676 - RLTR25B LTR ERVK -166 862 519 6 924 551 314 37 5 chr6 44455293 44455482 -105061555 - B3 SINE B2 -1 215 21 6 924 24 109 0 0 chr6 44455986 44456087 -105060950 + AT_rich Low_complexity Low_complexity 1 101 0 6 924 22 56 0 0 chr6 44457080 44457116 -105059921 + AT_rich Low_complexity Low_complexity 1 36 0 6 924 509 272 81 61 chr6 44457222 44457590 -105059447 - MT2A LTR ERVL -166 435 16 6 924 6945 208 142 32 chr6 44457597 44458851 -105058186 + L1_Mur3 LINE L1 712 2020 -3860 6 924 450 75 0 0 chr6 44458851 44458918 -105058119 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 924 369 0 0 0 chr6 44458918 44458958 -105058079 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 924 6945 212 204 59 chr6 44458958 44459230 -105057807 + L1_Mur3 LINE L1 2021 2551 -3329 6 924 1107 82 0 0 chr6 44459230 44459376 -105057661 - B1_Mm SINE Alu -1 146 1 6 924 6945 212 204 59 chr6 44459376 44461291 -105055746 + L1_Mur3 LINE L1 2552 4622 -1258 6 924 248 280 0 106 chr6 44461306 44461413 -105055624 + PB1 SINE Alu 7 92 -35 6 924 774 278 31 17 chr6 44461864 44462171 -105054866 + Lx6 LINE L1 6949 7523 -173 6 924 7943 83 5 4 chr6 44462151 44463475 -105053562 - L1Md_F2 LINE L1 0 6582 5291 6 924 287 208 29 29 chr6 44463388 44463492 -105053545 + Lx7 LINE L1 7441 7544 -152 6 924 328 258 21 73 chr6 44463521 44463617 -105053420 - Lx9 LINE L1 -349 7295 7205 6 924 373 294 13 52 chr6 44464053 44464207 -105052830 - Lx9 LINE L1 -628 7016 6869 6 924 1064 208 139 4 chr6 44464214 44464465 -105052572 + Lx9 LINE L1 6581 6865 -779 6 924 266 289 153 32 chr6 44465062 44465219 -105051818 - Lx8 LINE L1 -28 7445 7270 6 924 460 239 62 0 chr6 44465246 44465359 -105051678 + MTD LTR MaLR 1 120 -299 6 924 8101 178 31 18 chr6 44465378 44468031 -105049006 - Lx4B LINE L1 -4 7054 4356 6 924 865 274 51 87 chr6 44468031 44468366 -105048671 + MTD LTR MaLR 92 414 -5 6 924 330 356 65 37 chr6 44468501 44468746 -105048291 + Lx8 LINE L1 7066 7317 -156 6 924 549 61 43 26 chr6 44468748 44468865 -105048172 + (TTTTA)n Simple_repeat Simple_repeat 1 119 0 6 924 242 96 0 71 chr6 44468981 44469037 -105048000 + Lx6 LINE L1 7408 7459 -1 6 924 495 310 128 48 chr6 44469876 44470127 -105046910 + B4A SINE B4 2 272 -20 6 924 459 348 39 39 chr6 44470312 44470650 -105046387 + Lx8 LINE L1 6975 7312 -161 6 924 549 288 87 5 chr6 44471786 44471971 -105045066 - B3 SINE B2 -15 201 2 6 924 1832 225 42 2 chr6 44472869 44473274 -105043763 + MTC LTR MaLR 1 421 0 6 924 417 293 3 0 chr6 44473513 44473629 -105043408 - B1F SINE Alu -19 130 12 6 924 243 0 0 0 chr6 44473664 44473691 -105043346 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 924 1012 302 106 33 chr6 44473691 44473976 -105043061 + Lx7 LINE L1 5894 6191 -1505 6 924 626 76 19 0 chr6 44473976 44474081 -105042956 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 6 924 1012 302 106 33 chr6 44474081 44474371 -105042666 + Lx7 LINE L1 6192 6511 -1185 6 924 219 69 0 0 chr6 44474380 44474409 -105042628 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 924 236 354 31 0 chr6 44474556 44474652 -105042385 + B1F SINE Alu 51 149 0 6 924 389 309 36 7 chr6 44474829 44474969 -105042068 + Lx8 LINE L1 7199 7342 -131 6 924 420 143 0 0 chr6 44475060 44475130 -105041907 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 924 21 0 0 0 chr6 44475432 44475453 -105041584 + AT_rich Low_complexity Low_complexity 1 21 0 6 924 3882 85 6 0 chr6 44476265 44476793 -105040244 - L1_Mus3 LINE L1 -2 6636 6106 6 924 462 77 4 0 chr6 44476793 44476860 -105040177 + L1_Mus3 LINE L1 6046 6120 -464 6 924 24 0 0 0 chr6 44476973 44476997 -105040040 + AT_rich Low_complexity Low_complexity 1 24 0 6 924 181 323 97 0 chr6 44477040 44477133 -105039904 + MIRm SINE MIR 81 182 -94 6 924 890 59 0 0 chr6 44477185 44477304 -105039733 + L1_Mm LINE L1 3572 3690 -2193 6 924 7737 51 2 1 chr6 44477353 44478317 -105038720 + L1Md_F2 LINE L1 5614 6578 -4 6 924 1624 272 104 22 chr6 44478879 44479386 -105037651 - RMER15 LTR ERVL 0 575 27 6 924 2601 211 54 21 chr6 44479911 44480518 -105036519 + L1_Mus2 LINE L1 511 1143 -5473 6 924 2908 79 8 5 chr6 44480518 44480913 -105036124 + MTA_Mm LTR MaLR 1 396 0 6 924 27579 139 9 21 chr6 44480913 44484532 -105032505 + L1_Mus2 LINE L1 1125 4663 -1220 6 924 2914 44 8 8 chr6 44484532 44484900 -105032137 + L1Md_F2 LINE L1 6215 6582 0 6 924 27579 123 10 13 chr6 44484900 44486186 -105030851 + L1_Mus2 LINE L1 4664 5948 -618 6 924 3557 104 6 35 chr6 44486186 44486735 -105030302 + L1_Mus2 LINE L1 6034 6566 0 6 924 2661 87 11 3 chr6 44486735 44486752 -105030285 + L1_Mus2 LINE L1 5949 5968 -598 6 924 276 398 66 20 chr6 44486783 44487088 -105029949 - MLT1C LTR MaLR -8 459 141 6 924 690 292 24 14 chr6 44487620 44487832 -105029205 + Charlie2b DNA MER1_type 464 677 -2105 6 924 1314 231 42 6 chr6 44487881 44488242 -105028795 + Charlie2a DNA MER1_type 1463 1836 -1025 6 924 1080 83 7 0 chr6 44489334 44489479 -105027558 - B1_Mm SINE Alu -1 146 1 6 924 461 347 68 0 chr6 44489531 44489750 -105027287 + L1MC LINE L1 5412 5645 -2237 6 924 2518 140 2 2 chr6 44490577 44490971 -105026066 + L1_Mm LINE L1 5427 5820 -63 6 924 459 0 0 0 chr6 44490985 44491036 -105026001 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 924 24 0 0 0 chr6 44491036 44491060 -105025977 + AT_rich Low_complexity Low_complexity 1 24 0 6 924 26 30 0 0 chr6 44491087 44491120 -105025917 + AT_rich Low_complexity Low_complexity 1 33 0 6 924 303 353 30 51 chr6 44491911 44491988 -105025049 - Lx8 LINE L1 -62 7411 7333 6 924 426 53 0 0 chr6 44491988 44492045 -105024992 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 924 303 353 30 51 chr6 44492045 44492203 -105024834 - Lx8 LINE L1 -141 7332 7181 6 924 414 253 57 121 chr6 44492723 44492775 -105024262 + Lx9 LINE L1 7367 7418 -226 6 924 333 0 0 0 chr6 44492775 44492812 -105024225 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 924 414 253 57 121 chr6 44492812 44493056 -105023981 + Lx9 LINE L1 7419 7644 0 6 924 22 0 0 0 chr6 44493109 44493131 -105023906 + AT_rich Low_complexity Low_complexity 1 22 0 6 924 279 122 0 0 chr6 44493294 44493343 -105023694 + (T)n Simple_repeat Simple_repeat 1 49 0 6 924 282 29 0 0 chr6 44493429 44493464 -105023573 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 924 1982 48 4 4 chr6 44493507 44493759 -105023278 + L1Md_F3 LINE L1 6332 6583 -1 6 924 540 45 0 0 chr6 44493924 44493991 -105023046 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 924 244 318 0 12 chr6 44495588 44495674 -105021363 + CT-rich Low_complexity Low_complexity 3 87 0 7 924 309 82 0 0 chr6 44495959 44496008 -105021029 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 7 924 25 90 0 0 chr6 44496360 44496427 -105020610 + AT_rich Low_complexity Low_complexity 1 67 0 7 924 300 70 0 0 chr6 44496456 44496499 -105020538 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7 924 1165 82 0 0 chr6 44496507 44496654 -105020383 - B1_Mus1 SINE Alu 0 148 2 7 924 268 358 84 39 chr6 44496680 44496834 -105020203 - MER57E1 LTR ERV1 -31 341 181 7 924 480 318 95 30 chr6 44496976 44497239 -105019798 + Lx8 LINE L1 7191 7470 -3 7 924 336 48 0 0 chr6 44497807 44497849 -105019188 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 7 924 258 156 0 0 chr6 44497839 44497884 -105019153 + CT-rich Low_complexity Low_complexity 1 45 0 7 924 4917 80 1 3 chr6 44497893 44498548 -105018489 - L1_Mus1 LINE L1 0 6567 5914 7 924 4570 126 3 50 chr6 44498548 44499322 -105017715 + L1_Mus1 LINE L1 5143 5879 -4 7 924 22 0 0 0 chr6 44499697 44499719 -105017318 + AT_rich Low_complexity Low_complexity 1 22 0 7 924 1162 141 0 26 chr6 44499781 44499970 -105017067 - B2_Mm2 SINE B2 -10 185 2 7 924 533 282 13 6 chr6 44500427 44500584 -105016453 - MTD LTR MaLR -206 213 56 1 924 4598 41 28 2 chr6 44500721 44501286 -105015751 - L1Md_F2 LINE L1 0 6582 6003 2 924 1071 174 68 0 chr6 44501522 44501741 -105015296 - Lx3A LINE L1 -4 6977 6744 3 924 22 80 0 0 chr6 44501997 44502047 -105014990 + AT_rich Low_complexity Low_complexity 1 50 0 4 924 24 67 0 0 chr6 44502311 44502356 -105014681 + AT_rich Low_complexity Low_complexity 1 45 0 5 924 703 325 31 20 chr6 44502499 44502753 -105014284 + ORR1E LTR MaLR 88 344 -15 6 924 19750 72 112 141 chr6 44503081 44509533 -105007504 - L1Md_F2 LINE L1 -2 6583 236 7 924 12493 104 31 12 chr6 44510190 44512517 -105004520 - L1Md_A LINE L1 -2853 3030 650 8 924 2766 103 3 10 chr6 44512512 44512904 -105004133 + L1Md_F2 LINE L1 6095 6483 -99 9 924 1430 73 0 0 chr6 44512900 44513092 -105003945 - L1_Mus3 LINE L1 -242 6396 6205 1 924 1018 275 55 26 chr6 44513216 44513634 -105003403 - Lx9 LINE L1 -465 7179 6750 1 924 374 291 67 83 chr6 44514019 44514199 -105002838 - B3A SINE B2 0 198 22 1 924 319 280 157 67 chr6 44514221 44514520 -105002517 - L1MEf LINE L1 -3093 3053 2728 1 924 412 230 55 22 chr6 44514954 44515136 -105001901 - L1MEf LINE L1 -4142 2100 1913 1 924 497 280 60 15 chr6 44515292 44515309 -105001728 - B1F1 SINE Alu 0 149 128 1 924 423 0 0 0 chr6 44515309 44515356 -105001681 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 924 497 280 60 15 chr6 44515356 44515472 -105001565 - B1F1 SINE Alu -22 127 10 1 924 1714 216 109 5 chr6 44516117 44516522 -105000515 + RMER12B LTR ERVK 1 447 -957 1 924 308 82 0 58 chr6 44516521 44516573 -105000464 + PB1D9 SINE Alu 11 59 -61 1 924 234 0 0 158 chr6 44516574 44516688 -105000349 + (CAGAG)n Simple_repeat Simple_repeat 5 100 0 1 924 763 32 0 0 chr6 44516691 44516785 -105000252 + B1_Mm SINE Alu 42 135 -12 1 924 477 0 0 0 chr6 44516785 44516838 -105000199 + (GAAA)n Simple_repeat Simple_repeat 1 53 0 2 924 1246 263 134 98 chr6 44516839 44517676 -104999361 + RMER12 LTR ERVK 369 1572 0 2 924 207 0 0 0 chr6 44517924 44517947 -104999090 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 924 227 304 43 0 chr6 44518150 44518219 -104998818 + L1ME3A LINE L1 6012 6083 -90 2 924 1080 254 50 34 chr6 44518228 44518614 -104998423 - RMER6C LTR ERVK -4 716 324 2 924 6434 120 12 8 chr6 44518615 44519566 -104997471 - Lx LINE L1 -9 6645 5692 2 924 1952 150 15 3 chr6 44519548 44519888 -104997149 - L1_Mur2 LINE L1 -1398 4479 4136 2 924 1270 177 83 98 chr6 44519900 44520307 -104996730 - RMER17C LTR ERVK -9 401 1 2 924 1083 150 158 19 chr6 44520307 44520829 -104996208 - RMER17C-int LTR ERVK 0 3238 2576 2 924 580 146 76 8 chr6 44520857 44520988 -104996049 - RMER17C-int LTR ERVK -902 2336 2197 2 924 1455 204 162 27 chr6 44520998 44521442 -104995595 - RMER17C-int LTR ERVK -1250 1988 1485 2 924 334 271 212 29 chr6 44522597 44522734 -104994303 - RMER17C-int LTR ERVK -3076 162 1 2 924 2067 87 0 0 chr6 44522772 44523048 -104993989 - L1Md_F2 LINE L1 -456 6126 5851 2 924 3418 89 0 10 chr6 44523049 44523528 -104993509 + L1Md_F2 LINE L1 6109 6582 0 2 924 251 178 0 22 chr6 44523534 44523580 -104993457 - RMER17C LTR ERVK -365 45 1 2 924 674 122 0 0 chr6 44523580 44523687 -104993350 - L1_Mur2 LINE L1 -1743 4134 4028 2 924 2500 166 38 10 chr6 44523685 44524184 -104992853 + L1_Mur2 LINE L1 3529 4041 -1845 2 924 1315 205 64 22 chr6 44524188 44524502 -104992535 - RMER6C LTR ERVK -361 329 3 2 924 24 0 0 0 chr6 44524745 44524769 -104992268 + AT_rich Low_complexity Low_complexity 1 24 0 3 924 300 326 92 59 chr6 44525285 44525588 -104991449 - L1MC4a LINE L1 -1999 5883 5571 3 924 813 274 92 4 chr6 44526506 44526733 -104990304 + MTD LTR MaLR 59 305 -114 3 924 199 0 31 31 chr6 44527098 44527130 -104989907 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 3 924 4268 76 32 23 chr6 44527133 44527753 -104989284 - L1_Mus1 LINE L1 -16 6551 5926 3 924 7203 87 14 3 chr6 44527753 44528835 -104988202 - L1Md_F LINE L1 -3626 2257 1171 3 924 351 0 0 0 chr6 44528835 44528874 -104988163 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 924 4493 148 55 42 chr6 44528874 44529665 -104987372 - L1Md_F LINE L1 -5446 1170 359 3 924 1756 149 16 75 chr6 44531168 44531552 -104985485 - Lx3C LINE L1 0 6976 6616 3 924 234 0 0 0 chr6 44531887 44531913 -104985124 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 924 554 193 0 84 chr6 44531917 44532036 -104985001 - B1_Mus2 SINE Alu -30 117 9 3 924 493 32 0 0 chr6 44533240 44533303 -104983734 - L1Md_T LINE L1 -1675 4208 4146 4 924 11625 21 0 0 chr6 44533303 44534659 -104982378 + L1Md_T LINE L1 4231 5586 -297 4 924 8229 42 0 1 chr6 44534659 44535656 -104981381 + L1Md_T LINE L1 5587 6582 0 4 924 361 285 21 91 chr6 44536078 44536221 -104980816 + B3 SINE B2 74 206 -10 4 924 383 271 100 37 chr6 44536501 44536742 -104980295 + L1M2 LINE L1 5567 5822 -478 4 924 453 301 51 6 chr6 44537146 44537303 -104979734 + RMER1B Other Other 1 164 -902 4 924 240 326 21 10 chr6 44537355 44537451 -104979586 + RMER1B Other Other 338 434 -632 4 924 2863 261 40 61 chr6 44537523 44539097 -104977940 + RMER1A Other Other 1 1030 0 4 924 21 0 0 0 chr6 44539499 44539520 -104977517 + AT_rich Low_complexity Low_complexity 1 21 0 4 924 252 0 0 0 chr6 44543350 44543378 -104973659 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 4 924 714 158 17 0 chr6 44543693 44543813 -104973224 + B1_Mus1 SINE Alu 22 143 -5 4 924 231 36 0 0 chr6 44543814 44543842 -104973195 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 4 924 1414 149 60 91 chr6 44544147 44544471 -104972566 + ORR1A3 LTR MaLR 5 377 -2 4 924 372 111 19 0 chr6 44544511 44544576 -104972461 + ORR1A3 LTR MaLR 338 416 -5 4 924 386 379 54 65 chr6 44544649 44544928 -104972109 + B4 SINE B4 5 280 -12 5 924 213 39 0 0 chr6 44545041 44545067 -104971970 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 924 2776 233 44 98 chr6 44545283 44546257 -104970780 - Lx3C LINE L1 -100 6876 6025 5 924 416 224 75 88 chr6 44546273 44546420 -104970617 + MT2B LTR ERVL 120 264 -337 5 924 1018 73 0 7 chr6 44546319 44546456 -104970581 + B1_Mus1 SINE Alu 13 148 0 5 924 261 55 0 68 chr6 44546456 44546515 -104970522 + (CAAAAA)n Simple_repeat Simple_repeat 6 60 0 5 924 617 320 6 6 chr6 44546980 44547162 -104969875 + B3A SINE B2 1 182 -16 5 924 1240 120 0 0 chr6 44547394 44547577 -104969460 + B2_Mm2 SINE B2 9 191 -4 5 924 204 40 0 0 chr6 44548698 44548723 -104968314 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 5 924 283 264 19 168 chr6 44549350 44549505 -104967532 - L1MB5 LINE L1 -114 6060 5929 5 924 226 329 69 12 chr6 44549536 44549696 -104967341 - L1MB5 LINE L1 -577 5597 5429 5 924 204 152 69 20 chr6 44549970 44550071 -104966966 + (TA)n Simple_repeat Simple_repeat 2 107 0 6 924 4312 14 0 0 chr6 44550383 44550871 -104966166 - L1Md_A LINE L1 0 6582 6095 6 924 292 202 44 77 chr6 44550889 44550980 -104966057 - RMER1C Other Other -149 1193 1106 6 924 2402 296 125 16 chr6 44550923 44551947 -104965090 - Lx8 LINE L1 -200 7273 6138 6 924 243 154 0 0 chr6 44551953 44551992 -104965045 - U6 snRNA snRNA -68 39 1 6 924 431 347 43 32 chr6 44552109 44552389 -104964648 + Lx8 LINE L1 6216 6498 -975 6 924 12634 30 1 0 chr6 44552396 44554568 -104962469 - L1Md_T LINE L1 0 6582 4409 6 924 432 0 0 0 chr6 44554590 44554638 -104962399 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 924 404 250 0 6 chr6 44554644 44554821 -104962216 + (TG)n Simple_repeat Simple_repeat 2 177 0 6 924 1405 94 18 32 chr6 44554929 44555149 -104961888 + Lx3A LINE L1 4744 4960 -926 6 924 8319 130 30 30 chr6 44555142 44556629 -104960408 + Lx3A LINE L1 5497 6976 -5 6 924 34 24 0 0 chr6 44556631 44556672 -104960365 + AT_rich Low_complexity Low_complexity 1 41 0 7 924 260 330 27 18 chr6 44556779 44556890 -104960147 - L1M5 LINE L1 -570 5670 5559 7 924 21 0 0 0 chr6 44557282 44557303 -104959734 + AT_rich Low_complexity Low_complexity 1 21 0 7 924 325 348 75 78 chr6 44557653 44557974 -104959063 - MLT1E2 LTR MaLR -240 387 68 7 924 21 0 0 0 chr6 44558333 44558354 -104958683 + AT_rich Low_complexity Low_complexity 1 21 0 7 924 567 0 0 0 chr6 44559007 44559070 -104957967 + (TA)n Simple_repeat Simple_repeat 1 63 0 7 924 676 319 105 49 chr6 44559082 44559349 -104957688 + B4A SINE B4 9 290 -2 7 924 216 86 0 0 chr6 44559376 44559411 -104957626 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 924 920 95 7 0 chr6 44559684 44559821 -104957216 + (TTCC)n Simple_repeat Simple_repeat 4 141 0 7 924 483 123 0 0 chr6 44559822 44559903 -104957134 + (TC)n Simple_repeat Simple_repeat 2 82 0 7 924 183 184 12 198 chr6 44560226 44560307 -104956730 - MER5A DNA MER1_type -37 152 87 8 924 226 188 0 20 chr6 44560389 44560438 -104956599 - MLT1D LTR MaLR -58 447 400 8 924 238 352 82 0 chr6 44560474 44560596 -104956441 - Lx8 LINE L1 -205 7268 7137 8 924 288 53 0 0 chr6 44560863 44560901 -104956136 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 924 186 43 0 0 chr6 44561516 44561539 -104955498 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 924 456 263 20 20 chr6 44561561 44561662 -104955375 + RSINE1 SINE B4 40 140 -25 8 924 2031 244 55 19 chr6 44561710 44562224 -104954813 + Lx5 LINE L1 6519 7050 0 8 924 426 39 0 0 chr6 44562339 44562391 -104954646 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 924 23 33 0 0 chr6 44563191 44563221 -104953816 + AT_rich Low_complexity Low_complexity 1 30 0 8 924 23 33 0 0 chr6 44564101 44564131 -104952906 + AT_rich Low_complexity Low_complexity 1 30 0 8 925 348 309 93 26 chr6 44564554 44564747 -104952290 + L1MCa LINE L1 1246 1451 -5057 9 925 342 305 119 39 chr6 44565022 44565384 -104951653 + L1MC4a LINE L1 6451 6841 -1041 9 925 4055 178 19 2 chr6 44566056 44566939 -104950098 - Lx5 LINE L1 -1054 5996 5094 9 925 6848 165 43 9 chr6 44566946 44568209 -104948828 - Lx2 LINE L1 0 6997 5691 9 925 2683 53 8 11 chr6 44568214 44568573 -104948464 + L1_Mm LINE L1 3991 4348 -1535 9 925 495 139 35 0 chr6 44568541 44568627 -104948410 + L1_Mur2 LINE L1 3420 3508 -2369 9 925 232 227 15 0 chr6 44568628 44568694 -104948343 + Lx5 LINE L1 6981 7047 -3 9 925 1944 251 29 23 chr6 44569555 44570048 -104946989 + Lx7 LINE L1 6745 7247 -449 9 925 3530 34 71 20 chr6 44570048 44570500 -104946537 - IAPLTR2_Mm LTR ERVK 0 475 1 9 925 1944 251 29 23 chr6 44570500 44570528 -104946509 + Lx7 LINE L1 7248 7269 -427 9 925 2203 250 129 25 chr6 44570527 44571221 -104945816 - Lx5 LINE L1 -303 6747 5968 9 925 1032 293 25 14 chr6 44571215 44571492 -104945545 + Lx5 LINE L1 6771 7050 0 9 925 30 27 0 0 chr6 44571653 44571690 -104945347 + AT_rich Low_complexity Low_complexity 1 37 0 1 925 888 226 32 104 chr6 44571717 44572062 -104944975 + Lx7 LINE L1 7370 7689 -7 9 925 27 0 0 0 chr6 44572062 44572089 -104944948 + AT_rich Low_complexity Low_complexity 1 27 0 1 925 1422 182 68 0 chr6 44572093 44572356 -104944681 - Lx4A LINE L1 -2 7056 6776 1 925 5718 111 5 1 chr6 44572356 44573188 -104943849 + L1_Mus2 LINE L1 5732 6566 0 1 925 1943 180 31 0 chr6 44573309 44573665 -104943372 - Lx4A LINE L1 -272 6786 6420 1 925 347 41 20 0 chr6 44574253 44574302 -104942735 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 925 234 0 0 0 chr6 44574309 44574335 -104942702 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 925 328 353 51 45 chr6 44574551 44574708 -104942329 + RSINE1 SINE B4 3 160 -5 1 925 582 54 0 0 chr6 44574708 44574782 -104942255 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 925 372 50 133 0 chr6 44575325 44575385 -104941652 + L1_Mus2 LINE L1 6499 6566 0 1 925 5481 138 22 53 chr6 44576001 44577029 -104940008 + Lx3B LINE L1 5977 6972 -1 1 925 253 320 26 0 chr6 44577058 44577136 -104939901 - MLT1H LTR MaLR -401 148 69 1 925 741 285 45 15 chr6 44577168 44577488 -104939549 - MTE2b LTR MaLR 0 379 7 1 925 276 149 0 0 chr6 44578016 44578063 -104938974 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 1 925 912 283 37 99 chr6 44580529 44580933 -104936104 + MTEa LTR MaLR 1 379 0 1 925 342 286 36 72 chr6 44581491 44581657 -104935380 + MLT1D LTR MaLR 341 500 -5 1 925 735 33 0 0 chr6 44583268 44583358 -104933679 + (TTC)n Simple_repeat Simple_repeat 2 91 0 1 925 1852 238 13 45 chr6 44583362 44583810 -104933227 - RMER1C Other Other -29 1313 880 1 925 535 361 102 0 chr6 44583808 44584024 -104933013 + RMER1C Other Other 492 729 -613 1 925 782 186 382 72 chr6 44584093 44584400 -104932637 + Lx6 LINE L1 5601 6003 -1457 1 925 3048 254 32 65 chr6 44584548 44585532 -104931505 - Lx7 LINE L1 -7 7689 6738 1 925 370 141 300 10 chr6 44585533 44585598 -104931439 + Lx7 LINE L1 5734 5827 -1869 1 925 222 37 0 0 chr6 44585598 44585625 -104931412 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 925 370 141 300 10 chr6 44585625 44585659 -104931378 + Lx7 LINE L1 5828 5861 -1835 1 925 2110 259 8 24 chr6 44585656 44586158 -104930879 + Lx7 LINE L1 6213 6706 -990 1 925 1142 58 0 0 chr6 44586589 44586727 -104930310 + B1_Mm SINE Alu 1 138 -9 1 925 1400 55 6 0 chr6 44586809 44586990 -104930047 + L1Md_T LINE L1 6399 6580 -2 1 925 279 0 0 0 chr6 44587331 44587362 -104929675 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 925 351 0 0 0 chr6 44587362 44587400 -104929637 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 925 230 287 79 57 chr6 44587479 44587656 -104929381 - Lx8 LINE L1 -2 7471 7291 1 925 21 0 0 0 chr6 44588252 44588273 -104928764 + AT_rich Low_complexity Low_complexity 1 21 0 1 925 357 314 75 11 chr6 44589037 44589224 -104927813 - Tigger1 DNA MER2_type -950 1468 1270 1 925 234 301 121 8 chr6 44589322 44589446 -104927591 - Tigger1 DNA MER2_type -1274 1144 1007 1 925 1486 228 16 85 chr6 44589462 44589850 -104927187 - ORR1D1 LTR MaLR -11 363 3 1 925 202 200 0 100 chr6 44589880 44589980 -104927057 + T-rich Low_complexity Low_complexity 4 93 0 1 925 301 328 70 5 chr6 44589987 44590174 -104926863 - Tigger1 DNA MER2_type -1453 965 767 1 925 4852 117 55 70 chr6 44590175 44590720 -104926317 + Lx LINE L1 5693 6140 -514 1 925 213 97 0 0 chr6 44590720 44590751 -104926286 + B3 SINE B2 2 32 -184 1 925 4852 117 55 70 chr6 44590751 44591293 -104925744 + Lx LINE L1 6141 6586 -68 1 925 207 162 0 0 chr6 44591309 44591346 -104925691 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 925 378 57 0 0 chr6 44591362 44591415 -104925622 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 925 803 274 203 54 chr6 44591468 44592024 -104925013 - Tigger1 DNA MER2_type -1656 762 124 1 925 13331 111 32 5 chr6 44592025 44594287 -104922750 + MusHAL1 LINE L1 178 2485 -868 1 925 426 39 0 0 chr6 44594287 44594339 -104922698 + (TAAAA)n Simple_repeat Simple_repeat 1 52 0 1 925 13331 103 38 6 chr6 44594339 44594673 -104922364 + MusHAL1 LINE L1 2486 2848 -505 1 925 30272 98 25 17 chr6 44594673 44599805 -104917232 + L1Md_F2 LINE L1 409 5586 -297 1 925 7393 83 2 4 chr6 44599805 44600803 -104916234 + L1Md_F2 LINE L1 5587 6582 0 1 925 342 0 0 0 chr6 44601158 44601196 -104915841 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 925 480 18 0 0 chr6 44601196 44601252 -104915785 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 925 342 372 122 27 chr6 44601303 44601524 -104915513 - B4A SINE B4 -49 243 2 1 925 204 279 45 23 chr6 44601534 44601622 -104915415 + MIR SINE MIR 102 191 -71 1 925 28 61 0 0 chr6 44601643 44601692 -104915345 + AT_rich Low_complexity Low_complexity 1 49 0 1 925 28 0 0 0 chr6 44601997 44602025 -104915012 + AT_rich Low_complexity Low_complexity 1 28 0 1 925 22 0 0 0 chr6 44603299 44603321 -104913716 + AT_rich Low_complexity Low_complexity 1 22 0 1 925 6358 140 6 25 chr6 44604672 44605021 -104912016 + L1_Mus3 LINE L1 4818 5166 -717 1 925 3425 33 0 0 chr6 44605021 44605417 -104911620 - MTA_Mm LTR MaLR 0 396 1 1 925 6358 140 6 25 chr6 44605417 44605489 -104911548 + L1_Mus3 LINE L1 5167 5233 -650 1 925 415 60 15 15 chr6 44605489 44605557 -104911480 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 925 6358 140 6 25 chr6 44605557 44605574 -104911463 + L1_Mus3 LINE L1 5234 5236 -647 1 925 572 0 15 0 chr6 44605574 44605642 -104911395 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 1 925 6358 115 68 9 chr6 44605642 44606956 -104910081 + L1_Mus3 LINE L1 5237 6633 -5 1 925 3490 235 41 9 chr6 44607727 44608613 -104908424 + ORR1B1-int LTR MaLR 621 1782 -10 1 925 492 153 144 13 chr6 44608586 44608763 -104908274 + ORR1B1 LTR MaLR 312 393 -1 1 925 486 0 0 0 chr6 44608794 44608848 -104908189 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 925 450 302 83 34 chr6 44608903 44609317 -104907720 - L1MA4 LINE L1 -365 5932 5491 1 925 330 321 77 27 chr6 44609317 44609538 -104907499 - L1MA4 LINE L1 -773 5370 5139 1 925 22 35 0 0 chr6 44609557 44609586 -104907451 + AT_rich Low_complexity Low_complexity 1 29 0 1 925 36923 34 2 6 chr6 44609758 44615955 -104901082 - L1Md_T LINE L1 0 6582 417 1 925 214 154 29 44 chr6 44616183 44616251 -104900786 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 1 925 4044 72 4 2 chr6 44616320 44616850 -104900187 + L1Md_F2 LINE L1 6051 6581 -1 1 925 708 143 60 13 chr6 44617572 44617721 -104899316 + Lx LINE L1 6499 6654 0 1 925 357 24 0 0 chr6 44617767 44617809 -104899228 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 925 692 262 85 24 chr6 44617811 44618104 -104898933 - Lx9 LINE L1 -194 7450 7140 1 925 994 303 36 73 chr6 44618872 44619256 -104897781 + MTE2b LTR MaLR 1 370 -9 1 925 22 0 0 0 chr6 44620320 44620342 -104896695 + AT_rich Low_complexity Low_complexity 1 22 0 1 925 24 53 0 0 chr6 44620389 44620427 -104896610 + AT_rich Low_complexity Low_complexity 1 38 0 1 925 272 185 0 71 chr6 44620601 44620671 -104896366 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 1 925 261 281 0 40 chr6 44620673 44620773 -104896264 + Lx9 LINE L1 7303 7398 -246 1 925 1105 88 12 6 chr6 44621344 44621504 -104895533 + RLTRETN_Mm LTR ERVK 162 322 0 1 925 795 270 14 0 chr6 44621729 44621940 -104895097 + B3 SINE B2 2 215 -1 1 925 180 0 0 0 chr6 44622915 44622935 -104894102 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1 925 4506 94 8 12 chr6 44623448 44624091 -104892946 - L1_Mus2 LINE L1 0 6566 5927 1 925 8652 133 19 10 chr6 44624091 44626096 -104890941 - L1Md_F LINE L1 -3270 2613 591 1 925 317 300 55 35 chr6 44626353 44626498 -104890539 - L1M5 LINE L1 -2948 3198 3051 1 925 456 19 0 0 chr6 44628308 44628361 -104888676 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 925 251 246 91 15 chr6 44628633 44628699 -104888338 - RSINE1 SINE B4 -83 82 12 1 925 2031 179 37 2 chr6 44628989 44629393 -104887644 - L1_Mur1 LINE L1 -586 5300 4883 1 925 2027 133 35 3 chr6 44629396 44629502 -104887535 + L1_Mur2 LINE L1 4516 4632 -1245 1 925 315 0 0 0 chr6 44629502 44629537 -104887500 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 925 2027 133 35 3 chr6 44629537 44629776 -104887261 + L1_Mur2 LINE L1 4633 4871 -1006 1 925 531 0 0 0 chr6 44630230 44630289 -104886748 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 925 257 325 24 24 chr6 44630289 44630374 -104886663 - B3 SINE B2 -85 131 47 1 925 801 337 52 32 chr6 44630896 44631524 -104885513 - Charlie2a DNA MER1_type -713 2148 1508 1 925 1028 224 61 33 chr6 44631904 44632149 -104884888 - RLTR19 LTR ERVK -45 454 203 1 925 257 26 0 0 chr6 44632186 44632224 -104884813 + L1Md_F2 LINE L1 6533 6570 -12 1 925 1540 78 15 0 chr6 44632221 44632426 -104884611 + L1_Mm LINE L1 5447 5654 -229 1 925 1395 170 60 18 chr6 44632431 44632533 -104884504 - Lx LINE L1 -21 6633 6536 1 925 195 69 0 0 chr6 44632533 44632562 -104884475 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 1 925 1395 170 60 18 chr6 44632562 44632741 -104884296 - Lx LINE L1 -119 6535 6342 1 925 726 300 154 62 chr6 44634181 44634604 -104882433 + LTR40a LTR ERVL 1 462 0 1 925 740 240 17 11 chr6 44635338 44635515 -104881522 - Lx4B LINE L1 -4 7054 6877 1 925 326 137 0 0 chr6 44635515 44635566 -104881471 - MT2B2 LTR ERVL -314 270 220 1 925 272 254 29 15 chr6 44635566 44635583 -104881454 - RLTR25A LTR ERVK -515 588 520 1 925 1330 81 11 0 chr6 44635618 44635804 -104881233 + B2_Mm1t SINE B2 1 188 -5 1 925 411 21 0 0 chr6 44636073 44636121 -104880916 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 1 925 331 354 129 0 chr6 44636125 44636272 -104880765 - B3 SINE B2 -14 202 37 1 925 243 0 0 0 chr6 44637157 44637184 -104879853 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 925 448 290 88 37 chr6 44637208 44637344 -104879693 + B3A SINE B2 1 143 -55 1 925 180 0 0 0 chr6 44637363 44637383 -104879654 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 925 23 33 0 0 chr6 44637384 44637414 -104879623 + AT_rich Low_complexity Low_complexity 1 30 0 1 925 304 299 120 48 chr6 44637443 44637819 -104879218 - L1MC3 LINE L1 -105 7680 7278 1 925 233 229 45 57 chr6 44638096 44638184 -104878853 - L1MD1 LINE L1 -260 5982 5896 1 925 1172 311 12 16 chr6 44638309 44638741 -104878296 + L1VL4 LINE L1 204 633 -5669 1 925 5564 168 180 72 chr6 44638746 44639277 -104877760 + L1_Mm LINE L1 1555 2098 -3785 1 925 285 29 0 0 chr6 44639277 44639311 -104877726 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1 925 5564 168 180 72 chr6 44639311 44639335 -104877702 + L1_Mm LINE L1 2099 2124 -3759 1 925 406 147 321 27 chr6 44639335 44639447 -104877590 + B2_Mm2 SINE B2 47 191 -4 1 925 5564 168 180 72 chr6 44639447 44639659 -104877378 + L1_Mm LINE L1 2125 2363 -3520 1 925 735 99 198 0 chr6 44639659 44639780 -104877257 + B1_Mus2 SINE Alu 1 145 -2 2 925 243 0 0 0 chr6 44639780 44639807 -104877230 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 925 5564 168 180 72 chr6 44639807 44640582 -104876455 + L1_Mm LINE L1 2364 3388 -2495 1 925 2133 145 0 3 chr6 44640574 44640934 -104876103 + L1_Mur1 LINE L1 4170 4528 -1358 2 925 1072 62 7 0 chr6 44640935 44641080 -104875957 - L1_Mus2 LINE L1 -592 5974 5829 2 925 1127 115 0 0 chr6 44641126 44641291 -104875746 + L1_Mus3 LINE L1 5664 5828 -808 2 925 2958 24 0 0 chr6 44641291 44641628 -104875409 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 925 55440 21 18 6 chr6 44641628 44648029 -104869008 + IAPEz-int LTR ERVK 8 6481 0 2 925 2958 24 0 0 chr6 44648029 44648366 -104868671 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 925 4862 133 3 16 chr6 44648383 44649152 -104867885 + L1_Mus3 LINE L1 5866 6624 -14 2 925 231 186 0 23 chr6 44649177 44649221 -104867816 + B3A SINE B2 2 44 -154 2 925 6545 129 5 33 chr6 44649461 44649781 -104867256 + L1_Mm LINE L1 4559 4872 -1011 1 925 675 37 0 0 chr6 44649781 44649863 -104867174 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 2 925 6545 129 5 33 chr6 44649863 44649888 -104867149 + L1_Mm LINE L1 4873 4875 -1008 1 925 4662 84 1 8 chr6 44649888 44650535 -104866502 - L1Md_F2 LINE L1 0 6582 5940 2 925 6545 129 5 33 chr6 44650535 44651291 -104865746 + L1_Mm LINE L1 4876 5630 -253 1 925 1305 214 126 16 chr6 44652236 44652545 -104864492 + Lx4B LINE L1 6699 7041 -17 2 925 4516 4 0 0 chr6 44652661 44653154 -104863883 - MT2_Mm LTR ERVL 0 493 1 2 925 474 18 0 0 chr6 44653324 44653379 -104863658 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 925 244 241 37 0 chr6 44653379 44653433 -104863604 - PB1D10 SINE Alu -13 104 49 2 925 541 326 44 17 chr6 44653529 44653710 -104863327 + B4 SINE B4 107 292 0 2 925 319 296 13 13 chr6 44654866 44655020 -104862017 + (TA)n Simple_repeat Simple_repeat 1 154 0 2 925 351 0 0 0 chr6 44655076 44655115 -104861922 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 925 279 0 0 0 chr6 44655115 44655145 -104861892 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 925 204 40 0 0 chr6 44656069 44656094 -104860943 + (T)n Simple_repeat Simple_repeat 1 25 0 2 925 25 0 0 0 chr6 44656094 44656119 -104860918 + AT_rich Low_complexity Low_complexity 1 25 0 2 925 1041 84 21 0 chr6 44656144 44656287 -104860750 + B1_Mus2 SINE Alu 1 146 -1 2 925 198 0 0 0 chr6 44656288 44656310 -104860727 + (GAAAA)n Simple_repeat Simple_repeat 3 24 0 2 925 5289 38 0 0 chr6 44656437 44657069 -104859968 - L1Md_T LINE L1 0 6582 5951 2 925 22 56 0 0 chr6 44657140 44657176 -104859861 + AT_rich Low_complexity Low_complexity 1 36 0 2 925 564 198 83 36 chr6 44657280 44657448 -104859589 + B2_Mm2 SINE B2 1 176 -19 2 925 245 299 75 20 chr6 44657500 44657743 -104859294 - L1MD LINE L1 -1129 5014 4762 2 925 572 279 27 38 chr6 44658361 44658544 -104858493 + B3A SINE B2 3 183 -15 2 925 198 103 0 0 chr6 44659615 44659644 -104857393 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 925 282 148 0 0 chr6 44660091 44660145 -104856892 + (T)n Simple_repeat Simple_repeat 1 54 0 2 925 1122 83 0 0 chr6 44660163 44660308 -104856729 - B1_Mm SINE Alu -1 146 2 2 925 6119 178 68 11 chr6 44660310 44661877 -104855160 - Lx2B LINE L1 -223 6777 5303 2 925 490 316 33 13 chr6 44661884 44662035 -104855002 + RSINE1 SINE B4 2 155 -10 2 925 747 75 0 0 chr6 44662304 44662397 -104854640 - L1_Mus2 LINE L1 -298 6268 6176 2 925 1150 98 0 11 chr6 44662399 44662574 -104854463 + L1_Mus2 LINE L1 6393 6565 -1 2 925 233 238 32 0 chr6 44662807 44662870 -104854167 - L1M3 LINE L1 -437 5743 5679 2 925 315 127 0 0 chr6 44663048 44663111 -104853926 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 925 622 351 44 30 chr6 44663122 44663392 -104853645 - B4A SINE B4 -14 278 5 2 925 964 238 67 17 chr6 44664163 44664479 -104852558 + Lx3C LINE L1 6610 6980 -20 2 925 669 93 34 8 chr6 44664495 44664614 -104852423 + (GAGAA)n Simple_repeat Simple_repeat 4 125 0 2 925 6946 191 57 3 chr6 44665458 44666873 -104850164 + ORR1B2-int LTR MaLR 18 1509 0 2 925 1410 200 92 32 chr6 44666873 44667219 -104849818 + ORR1B2 LTR MaLR 1 367 0 2 925 1810 268 53 20 chr6 44667381 44668231 -104848806 + Lx5 LINE L1 6249 7042 -8 2 925 225 261 16 57 chr6 44668578 44668700 -104848337 - Lx6 LINE L1 -26 7434 7318 2 925 2551 212 32 34 chr6 44668740 44669439 -104847598 - RLTR40 LTR ERVK -23 794 1 2 925 906 124 0 0 chr6 44669768 44669897 -104847140 + B1_Mus1 SINE Alu 1 129 -19 2 925 672 107 0 0 chr6 44669897 44670000 -104847037 + (TA)n Simple_repeat Simple_repeat 1 103 0 2 925 22 35 0 0 chr6 44670065 44670094 -104846943 + AT_rich Low_complexity Low_complexity 1 29 0 2 925 343 68 0 33 chr6 44670753 44670814 -104846223 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 925 21 36 0 0 chr6 44671291 44671319 -104845718 + AT_rich Low_complexity Low_complexity 1 28 0 2 925 23 0 0 0 chr6 44671359 44671382 -104845655 + AT_rich Low_complexity Low_complexity 1 23 0 2 925 22 35 0 0 chr6 44671633 44671662 -104845375 + AT_rich Low_complexity Low_complexity 1 29 0 2 925 420 55 0 0 chr6 44672801 44672856 -104844181 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 925 442 211 62 0 chr6 44673970 44674098 -104842939 - RCHARR1 DNA MER1_type -127 847 712 2 925 443 246 164 0 chr6 44674119 44674229 -104842808 + B3 SINE B2 1 128 -88 2 925 780 310 117 38 chr6 44674294 44674434 -104842603 - RCHARR1 DNA MER1_type -292 682 520 2 925 390 57 0 0 chr6 44674434 44674487 -104842550 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 925 780 310 117 38 chr6 44674487 44674843 -104842194 - RCHARR1 DNA MER1_type -455 519 148 2 925 37868 30 0 1 chr6 44675082 44681497 -104835540 - L1Md_T LINE L1 0 6585 77 2 925 288 257 67 29 chr6 44683711 44683815 -104833222 + B1F1 SINE Alu 10 117 0 2 925 3940 95 21 2 chr6 44684266 44684826 -104832211 + L1_Mus1 LINE L1 5996 6566 -1 2 925 324 301 101 11 chr6 44685186 44685374 -104831663 + L1MEc LINE L1 1943 2147 -4253 2 925 693 338 21 3 chr6 44685447 44685732 -104831305 - Lx8 LINE L1 -324 7149 6860 2 925 337 333 136 12 chr6 44686020 44686351 -104830686 + L1MEc LINE L1 2325 2696 -3623 2 925 221 167 0 0 chr6 44686353 44686395 -104830642 + A-rich Low_complexity Low_complexity 1 42 0 2 925 249 306 31 24 chr6 44687072 44687199 -104829838 + L1MC LINE L1 3540 3667 -2479 2 925 239 240 0 0 chr6 44688390 44688459 -104828578 + (CCTAT)n Simple_repeat Simple_repeat 1 69 0 2 925 24 32 0 0 chr6 44688773 44688804 -104828233 + AT_rich Low_complexity Low_complexity 1 31 0 2 925 1215 287 49 39 chr6 44688964 44689374 -104827663 - Lx9 LINE L1 -709 6935 6522 2 925 304 196 274 0 chr6 44689379 44689481 -104827556 + RMER6B LTR ERVK 1 130 -331 2 925 585 181 16 57 chr6 44689492 44689615 -104827422 + RMER6B LTR ERVK 344 461 0 2 925 761 276 29 19 chr6 44689972 44690179 -104826858 - B3 SINE B2 -2 214 6 2 925 182 128 0 25 chr6 44690765 44690779 -104826258 + (CA)n Simple_repeat Simple_repeat 2 15 0 2 925 366 23 0 0 chr6 44690779 44690822 -104826215 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 925 182 128 0 25 chr6 44690822 44690847 -104826190 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 115 39134 29 1 6 chr6 44690879 44697053 -104819984 - L1Md_T LINE L1 0 6582 446 2 926 25 0 0 0 chr6 44697438 44697463 -104819574 + AT_rich Low_complexity Low_complexity 1 25 0 2 926 517 260 31 99 chr6 44697540 44697585 -104819452 - RSINE1 SINE B4 0 165 123 2 926 4033 110 84 38 chr6 44697585 44698303 -104818734 + RMER17A LTR ERVK 1 751 0 2 926 517 260 31 99 chr6 44698303 44698419 -104818618 - RSINE1 SINE B4 -43 122 15 2 926 29 0 0 0 chr6 44698870 44698899 -104818138 + AT_rich Low_complexity Low_complexity 1 29 0 2 926 477 269 142 6 chr6 44699295 44699471 -104817566 - ORR1D1 LTR MaLR 0 374 175 2 926 686 235 78 16 chr6 44700346 44700588 -104816449 + L1_Mur3 LINE L1 3712 3968 -1912 2 926 2753 83 19 124 chr6 44701020 44701488 -104815549 + Lx LINE L1 6072 6490 -164 2 926 1265 282 111 51 chr6 44701490 44702618 -104814419 - Lx9 LINE L1 -905 6739 5368 2 926 1633 250 86 75 chr6 44702666 44703618 -104813419 - Lx9 LINE L1 -1406 4441 3479 2 926 4455 253 50 5 chr6 44703628 44704672 -104812365 - Lx5 LINE L1 -3 7047 5957 2 926 8430 228 74 52 chr6 44704671 44706976 -104810061 - L1_Mur3 LINE L1 -428 5449 3129 2 926 2466 57 162 0 chr6 44706976 44707327 -104809710 + L1Md_F2 LINE L1 6170 6577 -5 2 926 273 29 0 0 chr6 44707330 44707364 -104809673 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 926 5140 106 22 3 chr6 44707364 44708122 -104808915 + L1_Mus2 LINE L1 5791 6564 -2 2 926 8430 228 74 52 chr6 44708122 44708905 -104808132 - L1_Mur3 LINE L1 -2749 3128 2291 2 926 7879 113 11 30 chr6 44708905 44709489 -104807548 - L1_Mm LINE L1 -55 5828 5236 2 926 180 0 0 0 chr6 44709489 44709509 -104807528 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 926 7879 113 11 30 chr6 44709509 44710071 -104806966 - L1_Mm LINE L1 -648 5235 4679 2 926 225 0 0 0 chr6 44710071 44710096 -104806941 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2 926 7879 113 11 30 chr6 44710096 44710123 -104806914 - L1_Mm LINE L1 -1205 4678 4678 2 926 2740 94 0 18 chr6 44710123 44710524 -104806513 - L1Md_F2 LINE L1 -5 6577 6184 2 926 7879 113 11 30 chr6 44710524 44710602 -104806435 - L1_Mm LINE L1 -1205 4678 4599 2 926 5133 88 5 24 chr6 44710602 44711347 -104805690 + L1_Mus2 LINE L1 5836 6566 0 2 926 4104 202 52 21 chr6 44711397 44711634 -104805403 - L1_Mur3 LINE L1 -3573 2304 2062 2 926 411 83 0 0 chr6 44711634 44711694 -104805343 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 926 4104 202 52 21 chr6 44711694 44712156 -104804881 - L1_Mur3 LINE L1 -3816 2061 1603 2 926 432 0 0 0 chr6 44712156 44712204 -104804833 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 926 4104 235 47 16 chr6 44712204 44712868 -104804169 - L1_Mur3 LINE L1 -4275 1602 825 2 926 1008 127 116 5 chr6 44713077 44713267 -104803770 - Lx3B LINE L1 -5 6968 6758 2 926 1687 158 18 28 chr6 44713267 44713593 -104803444 - RLTR31A_Mm LTR ERVK -261 323 1 2 926 306 210 0 0 chr6 44713594 44713656 -104803381 - Lx3B LINE L1 -512 6461 6400 2 926 447 297 18 43 chr6 44713654 44713935 -104803102 - L1_Rod LINE L1 -2413 3434 3161 2 926 879 37 0 0 chr6 44714786 44714893 -104802144 + (GA)n Simple_repeat Simple_repeat 1 107 0 2 926 399 323 45 50 chr6 44715257 44715456 -104801581 + L1MEc LINE L1 1987 2184 -4216 2 926 269 203 0 39 chr6 44715521 44715598 -104801439 - RMER15 LTR ERVL -105 470 397 2 926 195 204 0 0 chr6 44716035 44716089 -104800948 + A-rich Low_complexity Low_complexity 2 55 0 2 926 644 93 10 0 chr6 44716126 44716223 -104800814 + (GAAA)n Simple_repeat Simple_repeat 4 101 0 2 926 307 322 39 55 chr6 44716230 44716411 -104800626 + L1MD LINE L1 5296 5473 -886 2 926 485 345 89 15 chr6 44716532 44716870 -104800167 - Lx8 LINE L1 -562 6911 6549 2 926 288 257 54 12 chr6 44717470 44717641 -104799396 + L1M5 LINE L1 5648 5823 -301 2 926 1717 157 29 7 chr6 44718570 44718877 -104798160 - ORR1A2 LTR MaLR -13 314 1 3 926 6168 134 22 18 chr6 44718877 44719874 -104797163 - ORR1A2-int LTR MaLR 0 1963 963 3 926 1171 156 71 0 chr6 44719889 44720100 -104796937 - Lx2 LINE L1 -5 6992 6767 3 926 6553 142 11 12 chr6 44720101 44721536 -104795501 - Lx2 LINE L1 -361 6636 5205 3 926 3289 211 102 26 chr6 44721536 44722425 -104794612 - ORR1A2-int LTR MaLR -1006 957 1 3 926 3611 97 93 4 chr6 44722425 44722961 -104794076 - MT2B2 LTR ERVL 0 584 1 3 926 30 27 0 0 chr6 44723735 44723772 -104793265 + AT_rich Low_complexity Low_complexity 1 37 0 3 926 25 0 0 0 chr6 44723965 44723990 -104793047 + AT_rich Low_complexity Low_complexity 1 25 0 3 926 26 82 0 0 chr6 44724620 44724681 -104792356 + AT_rich Low_complexity Low_complexity 1 61 0 3 926 25 31 0 0 chr6 44724760 44724792 -104792245 + AT_rich Low_complexity Low_complexity 1 32 0 3 926 269 51 0 25 chr6 44725191 44725231 -104791806 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 926 1299 125 39 39 chr6 44725273 44725506 -104791531 - L1_Mus4 LINE L1 -8 6628 6396 3 926 800 283 108 19 chr6 44725588 44725912 -104791125 + ORR1E LTR MaLR 1 353 -6 3 926 380 319 24 59 chr6 44726053 44726223 -104790814 - MTE2a LTR MaLR -213 166 3 3 926 2199 157 85 160 chr6 44726459 44726854 -104790183 - RLTR25A LTR ERVK -5 1098 683 3 926 3513 88 18 2 chr6 44726854 44727345 -104789692 + L1_Mus2 LINE L1 6066 6564 -2 3 926 2199 157 85 160 chr6 44727345 44727631 -104789406 - RLTR25A LTR ERVK -421 682 468 3 926 198 128 0 0 chr6 44727824 44727863 -104789174 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 926 257 289 56 68 chr6 44728050 44728265 -104788772 + MURVY-LTR LTR ERV1 186 446 -73 3 926 2222 184 24 41 chr6 44728307 44728766 -104788271 - RLTR25A LTR ERVK -632 471 21 3 926 2677 157 21 8 chr6 44728767 44728892 -104788145 - L1_Mm LINE L1 -313 5570 5442 3 926 5480 33 2 0 chr6 44728892 44729535 -104787502 - L1Md_T LINE L1 0 6582 5939 3 926 2677 157 21 8 chr6 44729535 44729879 -104787158 - L1_Mm LINE L1 -442 5441 5096 3 926 11723 134 22 71 chr6 44729881 44732684 -104784353 - L1VL4 LINE L1 -611 2948 306 3 926 291 304 0 25 chr6 44732886 44732967 -104784070 - ID4_ SINE ID -1 82 4 3 926 243 316 81 0 chr6 44732984 44733120 -104783917 - B1F SINE Alu 0 149 3 3 926 6770 120 21 19 chr6 44733515 44734677 -104782360 - Lx LINE L1 0 6654 5491 3 926 38403 8 0 1 chr6 44735133 44741123 -104775914 + L1Md_A LINE L1 1 5586 -297 3 926 9034 2 0 0 chr6 44741123 44742119 -104774918 + L1Md_A LINE L1 5587 6582 0 3 926 22 0 0 0 chr6 44742741 44742763 -104774274 + AT_rich Low_complexity Low_complexity 1 22 0 3 926 3092 16 24 8 chr6 44742928 44743297 -104773740 + LSU-rRNA_Hsa rRNA rRNA 1512 1886 -3149 3 926 881 267 96 22 chr6 44743781 44744095 -104772942 + MLT1A0 LTR MaLR 26 362 -3 3 926 773 204 0 21 chr6 44744734 44744874 -104772163 + Lx5 LINE L1 6765 6901 -149 3 926 288 229 82 20 chr6 44744980 44745078 -104771959 - MLT1A LTR MaLR -3 371 268 3 926 312 274 83 10 chr6 44745082 44745178 -104771859 + Lx4B LINE L1 6952 7054 -4 3 926 529 299 47 34 chr6 44745214 44745595 -104771442 - Lx9 LINE L1 -15 7629 7244 3 926 15567 128 61 22 chr6 44745887 44749510 -104767527 + L1_Mur1 LINE L1 26 3852 -2034 3 926 660 100 9 0 chr6 44749509 44749619 -104767418 + L1_Mus2 LINE L1 6433 6543 -23 3 926 2187 156 14 0 chr6 44749619 44749979 -104767058 + Lx3A LINE L1 6608 6972 -9 3 926 221 0 0 33 chr6 44749979 44750009 -104767028 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3 926 22 70 0 0 chr6 44750091 44750134 -104766903 + AT_rich Low_complexity Low_complexity 1 43 0 3 926 251 367 54 12 chr6 44750870 44751129 -104765908 + L1MA4 LINE L1 5670 5939 -361 3 926 4824 67 5 0 chr6 44751163 44751789 -104765248 + L1_Mus1 LINE L1 5939 6567 0 3 926 1614 92 33 0 chr6 44752105 44752345 -104764692 - L1_Mus3 LINE L1 -2 6636 6389 3 926 3643 118 2 4 chr6 44752348 44752886 -104764151 + L1_Mm LINE L1 5259 5795 -88 3 926 270 0 0 0 chr6 44753062 44753092 -104763945 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 3 926 722 219 66 35 chr6 44753092 44753391 -104763646 - Lx4B LINE L1 -21 7037 6640 3 926 582 292 56 34 chr6 44753779 44754013 -104763024 + RMER20B LTR ERVK 126 364 -263 3 926 2036 43 0 19 chr6 44754052 44754310 -104762727 - L1_Mus1 LINE L1 0 6567 6315 3 926 484 283 9 0 chr6 44754829 44754942 -104762095 + ORR1E LTR MaLR 4 117 -242 3 926 21 57 0 0 chr6 44755023 44755058 -104761979 + AT_rich Low_complexity Low_complexity 1 35 0 3 926 21 36 0 0 chr6 44755454 44755482 -104761555 + AT_rich Low_complexity Low_complexity 1 28 0 3 926 806 330 10 20 chr6 44755884 44756190 -104760847 + Lx8 LINE L1 7071 7373 -100 3 926 1262 298 65 62 chr6 44756775 44757355 -104759682 + RLTR22_Mur LTR ERVK 1 582 -1266 3 926 371 227 22 125 chr6 44757373 44757509 -104759528 + RLTR22_Mur LTR ERVK 555 676 -1172 3 926 303 250 9 99 chr6 44757618 44757729 -104759308 + RMER12 LTR ERVK 1041 1141 -181 3 926 402 240 0 83 chr6 44757849 44757958 -104759079 + RMER12 LTR ERVK 1223 1322 0 3 926 22 35 0 0 chr6 44758629 44758658 -104758379 + AT_rich Low_complexity Low_complexity 1 29 0 3 926 31 0 0 0 chr6 44759389 44759420 -104757617 + AT_rich Low_complexity Low_complexity 1 31 0 3 926 445 380 30 37 chr6 44759514 44759678 -104757359 + RSINE1 SINE B4 3 165 0 3 926 23 33 0 0 chr6 44761105 44761135 -104755902 + AT_rich Low_complexity Low_complexity 1 30 0 3 926 21 0 0 0 chr6 44761673 44761694 -104755343 + AT_rich Low_complexity Low_complexity 1 21 0 3 926 31 0 0 0 chr6 44761849 44761880 -104755157 + AT_rich Low_complexity Low_complexity 1 31 0 3 926 302 352 40 29 chr6 44762385 44762736 -104754301 - L1MC3 LINE L1 -19 7766 7412 3 926 215 211 0 0 chr6 44762765 44762803 -104754234 + polypyrimidine Low_complexity Low_complexity 5 42 0 3 926 837 64 28 39 chr6 44762804 44762983 -104754054 + (TTCTC)n Simple_repeat Simple_repeat 2 178 0 3 926 792 32 0 0 chr6 44762990 44763085 -104753952 + (TC)n Simple_repeat Simple_repeat 2 96 0 3 926 226 296 75 47 chr6 44763231 44763444 -104753593 - L1MC3 LINE L1 -619 7166 6948 3 926 24 53 0 0 chr6 44763593 44763631 -104753406 + AT_rich Low_complexity Low_complexity 1 38 0 3 926 529 148 0 9 chr6 44764362 44764471 -104752566 - L1_Mus4 LINE L1 0 6636 6529 3 926 1363 259 25 105 chr6 44766362 44766562 -104750475 + Lx7 LINE L1 7163 7357 -339 3 926 237 33 0 0 chr6 44766562 44766592 -104750445 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 926 1363 259 25 105 chr6 44766592 44766955 -104750082 + Lx7 LINE L1 7358 7681 -15 3 926 1988 194 15 42 chr6 44767074 44767553 -104749484 + RMER4A LTR ERVK 1 466 0 3 926 7012 197 30 26 chr6 44767597 44769194 -104747843 - Lx4B LINE L1 -4 7054 5440 3 926 5771 215 47 53 chr6 44769193 44771072 -104745965 - Lx4B LINE L1 -1061 4816 2948 3 926 431 35 18 0 chr6 44771190 44771247 -104745790 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 926 3892 186 31 10 chr6 44772549 44773381 -104743656 - Lx4B LINE L1 -2914 2963 2114 3 926 1124 193 84 0 chr6 44773421 44773696 -104743341 + L1_Mur1 LINE L1 1745 2042 -3844 3 926 297 0 0 0 chr6 44773697 44773730 -104743307 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 926 351 0 0 0 chr6 44773730 44773768 -104743269 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 926 1683 158 29 54 chr6 44773782 44774275 -104742762 + RMER6A LTR ERVK 346 720 0 3 926 809 230 78 37 chr6 44774639 44774856 -104742181 - URR1A DNA MER1_type 0 226 1 3 926 697 94 0 0 chr6 44775416 44775512 -104741525 + BC1_Mm scRNA scRNA 1 96 -56 3 926 1774 269 34 40 chr6 44776227 44776731 -104740306 + Lx6 LINE L1 6960 7460 0 3 926 297 0 0 0 chr6 44776760 44776793 -104740244 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 926 217 150 25 0 chr6 44777237 44777277 -104739760 + (ATTG)n Simple_repeat Simple_repeat 3 43 0 3 926 292 338 113 14 chr6 44777611 44777752 -104739285 + ID_B1 SINE B4 1 155 -69 3 926 249 33 0 0 chr6 44778675 44778705 -104738332 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 926 234 0 0 0 chr6 44778705 44778730 -104738307 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 926 237 179 27 95 chr6 44778995 44779069 -104737968 + RMER4B LTR ERVK 1 69 -397 3 926 228 137 0 0 chr6 44779071 44779122 -104737915 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 3 926 764 209 11 57 chr6 44779128 44779305 -104737732 + RMER4B LTR ERVK 60 228 -357 3 926 346 240 133 25 chr6 44779594 44779752 -104737285 - RLTR16 LTR ERVK -299 206 32 3 926 1595 149 11 11 chr6 44779813 44780092 -104736945 + Lx LINE L1 6376 6654 0 3 926 217 132 0 0 chr6 44780761 44780799 -104736238 + (T)n Simple_repeat Simple_repeat 1 38 0 3 926 634 211 0 0 chr6 44780921 44781044 -104735993 + URR1B DNA MER1_type 103 225 0 3 926 685 266 5 38 chr6 44781109 44781293 -104735744 - Lx5 LINE L1 -5 7045 6868 3 926 7192 87 15 2 chr6 44781294 44782417 -104734620 - L1_Mus1 LINE L1 0 6567 5431 3 926 3365 283 72 10 chr6 44782417 44783341 -104733696 - Lx5 LINE L1 -175 6875 5894 3 926 446 137 14 0 chr6 44783333 44783406 -104733631 - Lx5 LINE L1 -1313 5737 5664 3 926 3410 192 81 148 chr6 44783402 44784476 -104732561 + Lx5 LINE L1 4666 5667 -210 3 926 317 371 14 35 chr6 44785860 44786206 -104730831 + L1MA6 LINE L1 5773 6111 -189 3 926 7954 27 18 0 chr6 44786217 44787439 -104729598 - L1Md_A LINE L1 0 6582 5329 3 926 22 0 0 0 chr6 44787617 44787639 -104729398 + AT_rich Low_complexity Low_complexity 1 22 0 3 926 417 167 0 0 chr6 44788020 44788098 -104728939 + GA-rich Low_complexity Low_complexity 2 79 0 3 926 1125 114 0 0 chr6 44788099 44788315 -104728722 + (GA)n Simple_repeat Simple_repeat 1 216 0 3 926 1589 67 31 0 chr6 44788999 44789222 -104727815 + L1Md_F2 LINE L1 6353 6582 0 3 926 250 328 0 0 chr6 44789473 44789537 -104727500 - ORR1E LTR MaLR -295 64 1 3 926 266 264 21 21 chr6 44789551 44789644 -104727393 - L1M2 LINE L1 -531 5769 5677 3 926 1061 304 52 9 chr6 44789645 44789990 -104727047 + ORR1D2 LTR MaLR 1 360 -10 3 926 482 328 60 4 chr6 44790186 44790434 -104726603 - L1M2 LINE L1 -670 5630 5369 3 926 557 318 19 0 chr6 44790818 44791029 -104726008 - B3 SINE B2 0 216 2 3 926 295 312 35 67 chr6 44791119 44791404 -104725633 + L1M2 LINE L1 3699 3974 -2166 3 926 250 145 0 42 chr6 44791648 44791715 -104725322 + Lx9 LINE L1 7486 7549 -95 3 926 2484 126 2 58 chr6 44791715 44792161 -104724876 + Lx2 LINE L1 6562 6982 -15 3 926 315 0 0 0 chr6 44792168 44792203 -104724834 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 926 426 85 0 0 chr6 44792356 44792415 -104724622 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 926 234 0 0 0 chr6 44792415 44792441 -104724596 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 926 29 0 0 0 chr6 44792855 44792884 -104724153 + AT_rich Low_complexity Low_complexity 1 29 0 4 926 396 0 0 0 chr6 44793051 44793095 -104723942 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 4 926 1785 201 19 32 chr6 44793699 44794111 -104722926 - Lx LINE L1 -1 6653 6247 4 926 2650 172 67 20 chr6 44794636 44795175 -104721862 - RMER19B LTR ERVK 0 902 339 4 926 809 199 29 163 chr6 44795197 44795443 -104721594 - RMER19B LTR ERVK -676 226 14 4 926 408 88 0 0 chr6 44795632 44795689 -104721348 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 4 926 235 183 115 16 chr6 44796474 44796535 -104720502 - RLTR22_Mur LTR ERVK -486 1362 1296 4 926 350 318 19 38 chr6 44797549 44797706 -104719331 - MTD LTR MaLR -12 407 254 4 926 608 158 47 0 chr6 44797761 44797888 -104719149 - L1_Mus4 LINE L1 -7 6629 6497 4 926 282 264 14 0 chr6 44797951 44798023 -104719014 - Lx7 LINE L1 -2037 5659 5587 4 926 591 293 45 45 chr6 44798035 44798321 -104718716 + Lx7 LINE L1 6819 7104 -592 4 926 23 0 0 0 chr6 44799188 44799211 -104717826 + AT_rich Low_complexity Low_complexity 1 23 0 4 926 375 318 142 9 chr6 44799378 44799732 -104717305 + MER44C DNA MER2_type 320 727 -6 4 926 382 286 47 8 chr6 44800121 44800248 -104716789 + ID_B1 SINE B4 93 224 0 4 926 204 97 0 0 chr6 44801850 44801881 -104715156 + (GGAGAA)n Simple_repeat Simple_repeat 3 33 0 4 926 705 115 0 0 chr6 44801919 44802023 -104715014 + BC1_Mm scRNA scRNA 1 104 -48 4 926 755 368 55 8 chr6 44802034 44802184 -104714853 + MTE2a LTR MaLR 1 157 -222 4 926 1522 138 64 24 chr6 44802184 44802480 -104714557 - L1_Mus3 LINE L1 0 6638 6331 4 926 755 368 55 8 chr6 44802480 44802691 -104714346 + MTE2a LTR MaLR 158 378 -1 4 926 33 0 0 0 chr6 44803014 44803047 -104713990 + AT_rich Low_complexity Low_complexity 1 33 0 4 926 216 86 0 0 chr6 44803159 44803194 -104713843 + (T)n Simple_repeat Simple_repeat 1 35 0 4 926 1100 91 7 0 chr6 44803205 44803348 -104713689 - B1_Mm SINE Alu -1 146 3 4 926 321 26 0 0 chr6 44804533 44804571 -104712466 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 926 234 0 0 0 chr6 44804600 44804626 -104712411 + (TA)n Simple_repeat Simple_repeat 1 26 0 4 926 555 78 0 0 chr6 44804723 44804800 -104712237 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 4 926 180 77 0 0 chr6 44804889 44804915 -104712122 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 4 926 4552 212 60 32 chr6 44804944 44805704 -104711333 - Lx5 LINE L1 -95 6955 6159 4 926 3151 58 19 2 chr6 44805704 44806120 -104710917 + L1_Mus1 LINE L1 6144 6566 -1 4 926 4552 212 60 32 chr6 44806120 44806391 -104710646 - Lx5 LINE L1 -892 6158 5895 4 926 637 47 12 0 chr6 44806391 44806477 -104710560 - B1_Mm SINE Alu -1 146 60 4 926 5384 209 29 9 chr6 44806485 44807710 -104709327 - Lx5 LINE L1 -1 5876 4627 4 926 3450 80 2 2 chr6 44807711 44808164 -104708873 - L1_Mus1 LINE L1 -25 6542 6090 4 926 4874 171 38 64 chr6 44808362 44809548 -104707489 + L1_Mur2 LINE L1 2906 4060 -1817 4 926 8115 44 1 0 chr6 44809570 44810552 -104706485 + L1Md_F2 LINE L1 5587 6569 -13 4 926 543 215 0 0 chr6 44810578 44810699 -104706338 + GA-rich Low_complexity Low_complexity 4 124 0 4 926 2366 212 77 73 chr6 44810708 44811441 -104705596 - Lx5 LINE L1 -2965 2921 2061 4 926 180 97 0 0 chr6 44811441 44811472 -104705565 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 926 2366 200 26 81 chr6 44811472 44811615 -104705422 - Lx5 LINE L1 -3817 2060 1923 4 926 12339 107 20 8 chr6 44811612 44814167 -104702870 + L1Md_F LINE L1 406 2992 -2891 4 926 431 58 0 0 chr6 44814165 44814217 -104702820 + L1Md_F2 LINE L1 5534 5585 -298 4 926 7229 87 8 2 chr6 44814218 44815208 -104701829 + L1Md_F2 LINE L1 5587 6582 0 4 926 2939 209 26 7 chr6 44815209 44815553 -104701484 - Lx5 LINE L1 -3943 1934 1591 4 926 420 20 0 0 chr6 44815553 44815602 -104701435 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 926 2939 196 22 8 chr6 44815602 44816054 -104700983 - Lx5 LINE L1 -4287 1590 1122 4 926 3953 170 25 7 chr6 44816056 44816808 -104700229 + L1_Mur2 LINE L1 4578 5343 -534 4 926 3422 5 0 0 chr6 44816808 44817193 -104699844 + L1Md_T LINE L1 6198 6582 0 4 926 3726 222 19 126 chr6 44817193 44817679 -104699358 + L1_Mur2 LINE L1 5345 5685 -195 4 926 3494 253 48 16 chr6 44817677 44818653 -104698384 + Lx2B LINE L1 5963 6969 -31 4 926 297 0 0 0 chr6 44818653 44818686 -104698351 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 926 264 211 0 0 chr6 44818691 44818743 -104698294 - Lx5 LINE L1 -6032 1054 1003 4 926 531 339 69 21 chr6 44819064 44819353 -104697684 + Lx7 LINE L1 6631 6933 -763 4 926 7645 75 2 3 chr6 44819427 44820728 -104696309 - L1Md_F2 LINE L1 -11 6571 5269 4 926 3564 73 6 2 chr6 44820700 44821168 -104695869 + L1Md_F2 LINE L1 4800 5269 -614 4 926 2260 264 87 65 chr6 44821168 44822033 -104695004 - RMER19B LTR ERVK -18 884 1 4 926 613 355 71 22 chr6 44822044 44822507 -104694530 + Lx8 LINE L1 6960 7445 -28 4 926 734 293 44 11 chr6 44822509 44822692 -104694345 + B3 SINE B2 1 189 -27 4 926 3120 46 0 0 chr6 44823626 44823998 -104693039 + L1Md_F2 LINE L1 5937 6308 -274 4 926 1057 73 0 38 chr6 44823998 44824155 -104692882 + L1Md_F2 LINE L1 6420 6570 -14 4 926 348 335 99 43 chr6 44824523 44825056 -104691981 + L1M4 LINE L1 2665 3227 -2919 4 926 282 29 0 0 chr6 44825480 44825515 -104691522 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 926 559 327 0 0 chr6 44825532 44825691 -104691346 - RSINE1 SINE B4 -2 163 5 4 926 1050 118 0 0 chr6 44825714 44825875 -104691162 + (TTC)n Simple_repeat Simple_repeat 2 162 0 4 926 2841 67 5 32 chr6 44825883 44826228 -104690809 - L1_Mus1 LINE L1 0 6567 6233 4 115 2761 120 56 50 chr6 44826228 44826744 -104690293 + MURVY-LTR LTR ERV1 1 519 0 4 927 2841 67 5 32 chr6 44826744 44826802 -104690235 - L1_Mus1 LINE L1 -335 6232 6175 4 927 2582 89 0 0 chr6 44826802 44827149 -104689888 + L1_Mus1 LINE L1 5841 6187 -380 4 927 4531 46 2 3 chr6 44827585 44828149 -104688888 - L1Md_F2 LINE L1 -2 6580 6018 4 927 219 381 16 11 chr6 44828299 44828490 -104688547 + L2 LINE L2 2293 2484 -935 4 927 44 35 0 0 chr6 44828505 44828563 -104688474 + AT_rich Low_complexity Low_complexity 1 58 0 4 927 1251 286 100 22 chr6 44828568 44829287 -104687750 - L1MA8 LINE L1 -99 6192 5418 4 927 3110 184 24 12 chr6 44829318 44829911 -104687126 - Lx4B LINE L1 -3 7055 6456 4 927 2255 135 58 4 chr6 44829918 44830393 -104686644 - Lx4B LINE L1 -1106 5952 5441 4 927 25417 105 22 13 chr6 44830421 44834088 -104682949 - Lx3_Mus LINE L1 -131 6878 3150 4 927 342 0 0 0 chr6 44834088 44834126 -104682911 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 927 25417 132 45 24 chr6 44834126 44836939 -104680098 - Lx3_Mus LINE L1 -2737 3149 16 4 927 2304 159 46 0 chr6 44836945 44837360 -104679677 - L1_Mur2 LINE L1 -427 5450 5017 4 927 21 0 0 0 chr6 44838170 44838191 -104678846 + AT_rich Low_complexity Low_complexity 1 21 0 4 927 1492 52 0 5 chr6 44838215 44838408 -104678629 + L1Md_F3 LINE L1 6378 6569 -15 4 927 28 0 0 0 chr6 44838979 44839007 -104678030 + AT_rich Low_complexity Low_complexity 1 28 0 4 927 796 268 48 13 chr6 44839091 44839322 -104677715 - Lx6 LINE L1 -27 7433 7195 4 927 205 351 51 32 chr6 44839333 44839489 -104677548 + L2 LINE L2 2794 2952 -467 4 927 756 279 76 31 chr6 44839706 44840131 -104676906 - L1M5 LINE L1 -3299 2841 2398 4 927 254 322 0 0 chr6 44840137 44840196 -104676841 - MLT1E1 LTR MaLR -67 587 529 4 927 25 31 0 0 chr6 44840598 44840630 -104676407 + AT_rich Low_complexity Low_complexity 1 32 0 4 927 1753 249 53 16 chr6 44840818 44841255 -104675782 + Lx5 LINE L1 6595 7047 -3 4 927 320 344 17 70 chr6 44842537 44842709 -104674328 - Lx9 LINE L1 -507 7137 6975 4 927 1859 154 80 3 chr6 44843247 44843599 -104673438 - Lx2B LINE L1 0 7000 6622 4 927 604 116 0 0 chr6 44843599 44843685 -104673352 + Lx2B LINE L1 5699 5784 -1216 4 927 22 35 0 0 chr6 44843835 44843864 -104673173 + AT_rich Low_complexity Low_complexity 1 29 0 4 927 469 124 19 9 chr6 44844096 44844202 -104672835 + (TCTCTG)n Simple_repeat Simple_repeat 1 107 0 4 927 34 42 0 0 chr6 44844518 44844566 -104672471 + AT_rich Low_complexity Low_complexity 1 48 0 4 927 282 39 0 55 chr6 44844956 44845011 -104672026 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 4 927 494 33 0 0 chr6 44845013 44845074 -104671963 - B1_Mus2 SINE Alu -6 141 81 4 927 23 54 0 0 chr6 44845663 44845700 -104671337 + AT_rich Low_complexity Low_complexity 1 37 0 4 927 29 28 0 0 chr6 44845893 44845929 -104671108 + AT_rich Low_complexity Low_complexity 1 36 0 4 927 1081 75 82 0 chr6 44846496 44846655 -104670382 + L1_Mus2 LINE L1 6394 6565 -1 4 927 1001 308 46 56 chr6 44846812 44847348 -104669689 - RLTR20B3 LTR ERVK -13 514 10 4 927 234 267 83 0 chr6 44847496 44847556 -104669481 + B4A SINE B4 12 76 -216 4 927 1077 241 57 0 chr6 44847755 44848000 -104669037 - MTD LTR MaLR -14 405 147 4 927 1235 251 133 105 chr6 44848035 44848885 -104668152 - RMER17B LTR ERVK -80 878 5 4 927 1605 280 26 6 chr6 44849236 44849729 -104667308 + Lx7 LINE L1 6804 7306 -390 4 927 375 266 0 21 chr6 44849734 44849876 -104667161 + T-rich Low_complexity Low_complexity 2 140 0 4 927 468 0 0 0 chr6 44849878 44849930 -104667107 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 927 186 231 0 0 chr6 44850788 44850853 -104666184 + CT-rich Low_complexity Low_complexity 2 66 0 4 927 1114 292 73 46 chr6 44851585 44852062 -104664975 + RMER5 LTR ERV1 1 490 -44 4 927 1095 82 0 26 chr6 44852385 44852397 -104664640 - B1_Mus1 SINE Alu -1 147 139 4 927 242 29 0 28 chr6 44852397 44852433 -104664604 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 927 1095 82 0 26 chr6 44852433 44852571 -104664466 - B1_Mus1 SINE Alu -10 138 1 4 927 192 158 0 0 chr6 44852737 44852775 -104664262 + T-rich Low_complexity Low_complexity 4 41 0 4 927 1839 178 107 2 chr6 44853803 44854272 -104662765 - RLTR11A2 LTR ERVK -9 518 1 4 927 954 126 17 6 chr6 44854563 44854739 -104662298 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 4 927 632 48 12 0 chr6 44854742 44854826 -104662211 + (TTTC)n Simple_repeat Simple_repeat 2 86 0 4 927 2271 228 72 26 chr6 44854830 44855371 -104661666 - Lx5 LINE L1 0 7050 6485 4 927 385 281 176 14 chr6 44855371 44855519 -104661518 + MTD LTR MaLR 103 274 -145 4 927 402 21 0 0 chr6 44855832 44855879 -104661158 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 927 369 43 0 0 chr6 44855879 44855925 -104661112 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 927 297 0 0 0 chr6 44856122 44856155 -104660882 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 4 927 406 267 0 33 chr6 44856292 44856412 -104660625 - L1M5 LINE L1 -1282 4864 4749 5 927 1287 232 15 70 chr6 44857417 44857825 -104659212 + Lx2B LINE L1 863 1250 -6478 5 927 423 0 0 0 chr6 44857825 44857872 -104659165 + (TAAAA)n Simple_repeat Simple_repeat 3 49 0 5 927 1287 217 108 26 chr6 44857872 44858131 -104658906 + Lx2B LINE L1 1251 1536 -4341 5 927 5108 162 45 15 chr6 44858129 44858640 -104658397 + Lx2B LINE L1 4889 5423 -454 5 927 6664 99 51 5 chr6 44858640 44859628 -104657409 - RLTR13D4 LTR ERVK 0 1033 1 5 927 6312 185 35 18 chr6 44859628 44860390 -104656647 + Lx2B LINE L1 5424 6216 -784 5 927 2920 83 2 2 chr6 44860390 44860786 -104656251 + MTA_Mm LTR MaLR 1 396 0 5 927 6312 218 22 22 chr6 44860786 44861575 -104655462 + Lx2B LINE L1 6217 6987 -13 5 927 6862 92 7 3 chr6 44861573 44862521 -104654516 - L1_Mus2 LINE L1 0 6566 5615 5 927 2797 225 51 33 chr6 44862526 44863367 -104653670 + L1_Mur3 LINE L1 1546 2401 -3479 5 927 32342 84 3 7 chr6 44863364 44868833 -104648204 + L1Md_F2 LINE L1 182 5586 -297 5 927 7718 63 2 0 chr6 44868834 44869827 -104647210 + L1Md_F2 LINE L1 5588 6582 0 5 927 1008 39 0 0 chr6 44869827 44869954 -104647083 + MTA_Mm LTR MaLR 219 345 -51 5 927 1163 228 174 3 chr6 44869956 44870148 -104646889 + L1_Mur3 LINE L1 2376 2587 -3290 5 927 834 47 0 0 chr6 44870148 44870255 -104646782 + (GA)n Simple_repeat Simple_repeat 2 108 0 5 927 1163 228 174 3 chr6 44870255 44870418 -104646619 + L1_Mur3 LINE L1 2588 2792 -3085 5 927 1496 173 144 0 chr6 44870414 44870795 -104646242 + L1_Mur3 LINE L1 3684 4119 -1761 5 927 1866 298 54 45 chr6 44871418 44872435 -104644602 + Lx6 LINE L1 6058 7456 -4 5 927 21 71 0 0 chr6 44872994 44873036 -104644001 + AT_rich Low_complexity Low_complexity 1 42 0 5 927 506 329 13 17 chr6 44873049 44873281 -104643756 + L1M2 LINE L1 3604 3834 -2309 5 927 342 45 0 0 chr6 44873300 44873344 -104643693 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 927 432 0 0 0 chr6 44873345 44873393 -104643644 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 927 390 326 78 28 chr6 44873441 44873801 -104643236 + L1M2 LINE L1 4024 4401 -1742 5 927 415 248 144 25 chr6 44873858 44874094 -104642943 + L1M2 LINE L1 4571 4834 -1309 5 927 2986 109 59 4 chr6 44874215 44874597 -104642440 - Lx2B LINE L1 -1315 5685 5281 5 927 522 83 0 0 chr6 44874597 44874669 -104642368 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 927 2986 107 61 4 chr6 44874669 44874760 -104642277 - Lx2B LINE L1 -606 5280 5189 5 927 1335 105 11 0 chr6 44874787 44874977 -104642060 + Lx3_Mus LINE L1 6200 6391 -618 5 927 552 160 0 0 chr6 44875020 44875120 -104641917 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 5 927 3821 81 22 7 chr6 44875357 44875905 -104641132 - L1_Mur1 LINE L1 -508 5378 4823 5 927 8571 101 58 18 chr6 44875908 44877214 -104639823 + Lx3_Mus LINE L1 5651 7008 -1 5 927 375 291 70 97 chr6 44877236 44877761 -104639276 + L1M2 LINE L1 4806 5374 -769 5 927 247 316 135 22 chr6 44877820 44877998 -104639039 + L1M2 LINE L1 5505 5702 -598 5 927 225 0 0 0 chr6 44878518 44878543 -104638494 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 927 1268 243 130 48 chr6 44878617 44878993 -104638044 - MTB_Mm LTR MaLR 0 407 1 5 927 231 36 0 0 chr6 44880625 44880653 -104636384 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 927 788 74 8 0 chr6 44880655 44880776 -104636261 + (GA)n Simple_repeat Simple_repeat 2 123 0 5 927 431 342 147 22 chr6 44880877 44881149 -104635888 + MLT1A0 LTR MaLR 1 306 -59 5 927 196 161 0 31 chr6 44881163 44881227 -104635810 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 5 927 332 325 18 96 chr6 44881329 44881547 -104635490 + B3 SINE B2 1 201 -15 5 927 23 0 0 0 chr6 44881803 44881826 -104635211 + AT_rich Low_complexity Low_complexity 1 23 0 5 927 306 0 0 0 chr6 44882153 44882187 -104634850 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 5 927 497 346 0 5 chr6 44882188 44882394 -104634643 - B3 SINE B2 -11 205 1 5 927 582 308 52 47 chr6 44882887 44883119 -104633918 + Lx8 LINE L1 6184 6416 -1057 5 927 244 179 26 0 chr6 44883175 44883253 -104633784 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 927 564 203 13 13 chr6 44883309 44883464 -104633573 - Lx9 LINE L1 -130 7514 7360 5 927 345 171 0 0 chr6 44883634 44883722 -104633315 + GA-rich Low_complexity Low_complexity 1 88 0 5 927 243 254 0 132 chr6 44883825 44883893 -104633144 - ID4_ SINE ID -1 82 24 5 927 21 0 0 0 chr6 44884080 44884101 -104632936 + AT_rich Low_complexity Low_complexity 1 21 0 5 927 630 71 0 0 chr6 44885322 44885406 -104631631 + (TA)n Simple_repeat Simple_repeat 1 84 0 5 927 766 87 123 23 chr6 44885471 44885601 -104631436 + L1Md_F2 LINE L1 6436 6578 -4 5 927 22 35 0 0 chr6 44885831 44885860 -104631177 + AT_rich Low_complexity Low_complexity 1 29 0 5 927 712 255 41 5 chr6 44886152 44886349 -104630688 + B3 SINE B2 1 204 -12 5 927 390 42 0 0 chr6 44886426 44886474 -104630563 + (TATAA)n Simple_repeat Simple_repeat 2 49 0 5 927 359 374 66 24 chr6 44886698 44886909 -104630128 + MLT1E2 LTR MaLR 304 523 -104 5 927 22 0 0 0 chr6 44887044 44887066 -104629971 + AT_rich Low_complexity Low_complexity 1 22 0 5 927 346 209 132 0 chr6 44887560 44887651 -104629386 + L1MC1 LINE L1 5752 5854 -479 5 927 676 264 77 41 chr6 44887655 44887849 -104629188 + B3 SINE B2 6 206 -10 5 927 180 179 0 0 chr6 44887849 44887888 -104629149 + GA-rich Low_complexity Low_complexity 2 40 0 5 927 238 275 39 70 chr6 44887890 44888002 -104629035 + L1MC1 LINE L1 5848 5956 -377 5 927 504 0 0 0 chr6 44888002 44888058 -104628979 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 5 927 230 275 39 70 chr6 44888058 44888074 -104628963 + L1MC1 LINE L1 5957 5972 -361 5 927 380 297 84 68 chr6 44888182 44888478 -104628559 - L1M4b LINE L1 -5175 2159 1859 5 927 598 313 45 74 chr6 44888831 44889227 -104627810 - RLTR26 LTR ERVK -225 417 2 5 927 339 272 126 16 chr6 44889227 44889353 -104627684 - B4A SINE B4 -48 244 105 5 927 738 10 30 0 chr6 44889493 44889592 -104627445 + (TG)n Simple_repeat Simple_repeat 2 103 0 5 927 654 311 14 0 chr6 44889621 44889769 -104627268 - RSINE1 SINE B4 -8 157 8 5 927 291 250 37 46 chr6 44889782 44889891 -104627146 + RCHARR1 DNA MER1_type 323 430 -544 5 927 518 287 0 52 chr6 44889907 44890098 -104626939 - B3A SINE B2 -16 182 2 5 927 21 0 0 0 chr6 44890101 44890122 -104626915 + AT_rich Low_complexity Low_complexity 1 21 0 5 927 443 339 12 0 chr6 44890191 44890356 -104626681 + RCHARR1 DNA MER1_type 596 762 -212 5 927 566 276 13 0 chr6 44890359 44890511 -104626526 - Lx9 LINE L1 -184 7460 7307 5 927 295 250 83 9 chr6 44890517 44890626 -104626411 + Lx9 LINE L1 7521 7637 -7 5 927 373 303 8 0 chr6 44890629 44890751 -104626286 + RCHARR1 DNA MER1_type 748 870 -104 5 927 196 77 51 0 chr6 44890758 44890797 -104626240 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 927 38 0 0 0 chr6 44890797 44890835 -104626202 + AT_rich Low_complexity Low_complexity 1 38 0 5 927 290 204 0 0 chr6 44890837 44890886 -104626151 - B1_Mur2 SINE Alu -2 147 99 5 927 5198 254 70 24 chr6 44890983 44892246 -104624791 - Lx7 LINE L1 0 7696 6401 5 927 1012 72 66 0 chr6 44892246 44892398 -104624639 - L1_Mus2 LINE L1 0 6566 6405 5 927 5198 254 70 24 chr6 44892398 44892669 -104624368 - Lx7 LINE L1 -1296 6400 6092 5 927 2049 229 75 2 chr6 44892687 44893207 -104623830 - Lx7 LINE L1 -236 5644 5087 5 927 4087 89 38 0 chr6 44893214 44893774 -104623263 - L1_Mus3 LINE L1 -8 6630 6050 5 927 1465 218 27 0 chr6 44893784 44894114 -104622923 - Lx7 LINE L1 -1612 4268 3930 5 927 227 190 59 20 chr6 44894096 44894198 -104622839 - Lx7 LINE L1 -2715 3165 3060 5 927 1529 6 0 16 chr6 44894198 44894381 -104622656 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 927 600 154 0 0 chr6 44894383 44894487 -104622550 + CT-rich Low_complexity Low_complexity 3 106 0 5 927 1111 95 0 0 chr6 44894487 44894634 -104622403 - B1_Mus2 SINE Alu 0 147 1 5 927 700 181 68 114 chr6 44894634 44894914 -104622123 - Lx7 LINE L1 -2819 3061 2795 5 927 198 0 0 0 chr6 44894951 44894973 -104622064 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 927 5186 145 82 2 chr6 44895008 44895870 -104621167 - Lx2 LINE L1 -162 6846 5916 5 927 1779 219 36 2 chr6 44895885 44896328 -104620709 - Lx7 LINE L1 -3071 2809 2352 5 927 1917 281 50 5 chr6 44896339 44896941 -104620096 - Lx7 LINE L1 -6853 875 247 5 927 405 0 0 0 chr6 44897499 44897544 -104619493 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 927 462 36 0 0 chr6 44897544 44897599 -104619438 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 5 927 186 290 101 58 chr6 44898432 44898571 -104618466 - MIRc SINE MIR -9 259 115 5 927 772 260 47 19 chr6 44899155 44899334 -104617703 - Lx7 LINE L1 -705 6991 6804 5 927 495 48 0 0 chr6 44899334 44899396 -104617641 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 927 772 260 47 19 chr6 44899396 44899428 -104617609 - Lx7 LINE L1 -893 6803 6774 5 927 958 282 8 8 chr6 44899417 44899667 -104617370 + Lx7 LINE L1 6218 6467 -1229 5 927 994 84 0 0 chr6 44899670 44899801 -104617236 - Lx LINE L1 -172 6482 6352 5 927 477 0 0 0 chr6 44899992 44900045 -104616992 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 927 241 361 22 52 chr6 44900066 44900238 -104616799 - MT2A LTR ERVL -131 402 251 5 927 1832 47 0 25 chr6 44900624 44900864 -104616173 + L1Md_F3 LINE L1 6336 6569 -15 5 927 491 371 76 29 chr6 44901421 44901906 -104615131 - MT2A LTR ERVL -25 508 1 5 927 251 334 43 69 chr6 44901916 44902292 -104614745 - L1M4 LINE L1 -909 5237 4872 5 927 331 316 105 40 chr6 44902305 44902512 -104614525 - L1M4 LINE L1 -3291 2855 2638 5 927 270 81 0 0 chr6 44902512 44902549 -104614488 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 927 331 316 105 40 chr6 44902549 44902711 -104614326 - L1M4 LINE L1 -3509 2637 2462 5 927 406 222 104 61 chr6 44904659 44904774 -104612263 + MER63B DNA AcHobo 317 436 0 5 927 1036 99 0 7 chr6 44905303 44905445 -104611592 + B1_Mus1 SINE Alu 1 141 -7 5 927 390 73 48 12 chr6 44905448 44905531 -104611506 + (CAAA)n Simple_repeat Simple_repeat 1 86 0 5 927 582 15 0 0 chr6 44905770 44905837 -104611200 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 927 251 235 87 10 chr6 44905963 44906066 -104610971 - Lx7 LINE L1 -8 7688 7578 5 927 652 244 0 31 chr6 44906151 44906312 -104610725 + Lx8 LINE L1 6313 6468 -1005 5 927 24 77 0 0 chr6 44906396 44906448 -104610589 + AT_rich Low_complexity Low_complexity 1 52 0 5 927 282 207 0 0 chr6 44906448 44906506 -104610531 - Lx6 LINE L1 -22 7438 7381 5 927 7482 62 12 1 chr6 44906532 44907535 -104609502 - L1Md_F2 LINE L1 -16 6566 5548 5 927 554 229 22 35 chr6 44907537 44907714 -104609323 - MTC LTR MaLR -193 228 42 5 927 2992 232 59 8 chr6 44907716 44908647 -104608390 - Lx5 LINE L1 -554 6496 5486 5 927 1944 277 8 18 chr6 44908649 44909163 -104607874 + Lx5 LINE L1 6535 7043 -7 5 927 17793 158 130 77 chr6 44909227 44912128 -104604909 + L1Md_F LINE L1 261 3378 -2505 5 927 3808 63 10 0 chr6 44912128 44912620 -104604417 + L1_Mus1 LINE L1 6068 6564 -3 5 927 17793 117 198 12 chr6 44912620 44912817 -104604220 + L1Md_F LINE L1 3379 3775 -2108 5 927 6150 34 1 0 chr6 44912817 44913548 -104603489 - L1Md_T LINE L1 0 6582 5851 5 927 17793 117 198 12 chr6 44913548 44915544 -104601493 + L1Md_F LINE L1 3776 5808 -75 5 927 358 238 12 0 chr6 44915546 44915630 -104601407 - MTC LTR MaLR -335 86 2 5 927 699 291 124 99 chr6 44918510 44918561 -104598476 - MER67C LTR ERV1 -16 695 638 5 927 393 22 0 0 chr6 44918561 44918607 -104598430 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 927 699 291 124 99 chr6 44918607 44918928 -104598109 - MER67C LTR ERV1 -74 637 314 5 927 3141 21 53 0 chr6 44918928 44919304 -104597733 + MTA_Mm LTR MaLR 1 396 0 5 927 699 291 124 99 chr6 44919304 44919608 -104597429 - MER67C LTR ERV1 -398 313 3 5 927 210 106 340 0 chr6 44919661 44919708 -104597329 + ID_B1 SINE B4 92 154 -70 5 927 558 0 0 0 chr6 44921677 44921739 -104595298 + (TTTC)n Simple_repeat Simple_repeat 1 62 0 6 927 816 125 0 0 chr6 44921741 44921869 -104595168 + (TCCC)n Simple_repeat Simple_repeat 3 130 0 6 927 330 26 0 0 chr6 44921869 44921908 -104595129 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 6 927 1245 107 0 0 chr6 44922034 44922212 -104594825 - L1_Mur1 LINE L1 -1722 4164 3987 6 927 8244 102 75 47 chr6 44922211 44923646 -104593391 + L1_Mur1 LINE L1 4178 5651 -235 6 927 336 252 153 8 chr6 44923646 44923770 -104593267 - RMER20B LTR ERVK -354 273 132 6 927 2303 194 87 56 chr6 44923927 44924254 -104592783 - L1_Mur3 LINE L1 -1217 4660 4326 6 927 3517 13 2 0 chr6 44924254 44924649 -104592388 - MTA_Mm LTR MaLR 0 396 1 6 927 2303 194 87 56 chr6 44924649 44924810 -104592227 - L1_Mur3 LINE L1 -1552 4325 4147 6 927 209 57 0 28 chr6 44924810 44924846 -104592191 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 927 1087 66 0 0 chr6 44924846 44924982 -104592055 - B1_Mus1 SINE Alu -11 137 2 6 927 2303 194 87 56 chr6 44924982 44925190 -104591847 - L1_Mur3 LINE L1 -1731 4146 3941 6 927 487 148 0 30 chr6 44925222 44925354 -104591683 + (TG)n Simple_repeat Simple_repeat 1 128 0 6 927 3576 200 30 5 chr6 44925358 44926360 -104590677 - L1_Mur3 LINE L1 -3850 2030 1003 6 927 307 314 42 88 chr6 44926376 44926568 -104590469 + RMER15 LTR ERVL 3 185 -390 6 927 777 297 66 46 chr6 44926660 44927052 -104589985 - RMER10A LTR ERVL -14 428 29 6 927 21 0 0 0 chr6 44927890 44927911 -104589126 + AT_rich Low_complexity Low_complexity 1 21 0 6 927 423 0 0 0 chr6 44928735 44928782 -104588255 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 927 396 59 0 0 chr6 44929709 44929760 -104587277 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 6 927 1050 99 0 0 chr6 44929762 44929903 -104587134 - B1_Mus2 SINE Alu -6 141 1 6 927 450 284 34 0 chr6 44930091 44930239 -104586798 - Lx9 LINE L1 -621 7023 6871 6 927 21 36 0 0 chr6 44931128 44931156 -104585881 + AT_rich Low_complexity Low_complexity 1 28 0 6 927 22 56 0 0 chr6 44931455 44931491 -104585546 + AT_rich Low_complexity Low_complexity 1 36 0 6 927 360 178 27 45 chr6 44931888 44932000 -104585037 - Lx9 LINE L1 -9 7635 7526 6 927 255 359 53 38 chr6 44932123 44932256 -104584781 + B3 SINE B2 74 208 -8 6 927 471 48 0 0 chr6 44932257 44932319 -104584718 + (TTAG)n Simple_repeat Simple_repeat 3 64 0 6 927 930 130 7 0 chr6 44932319 44932457 -104584580 - B1_Mus1 SINE Alu -8 140 2 6 927 22 35 0 0 chr6 44932461 44932490 -104584547 + AT_rich Low_complexity Low_complexity 1 29 0 6 927 3348 201 114 16 chr6 44932611 44933477 -104583560 - RMER19B LTR ERVK -7 895 1 6 927 664 306 132 4 chr6 44934456 44934699 -104582338 + B4 SINE B4 7 280 -12 6 927 369 0 0 0 chr6 44934796 44934837 -104582200 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 927 396 0 0 0 chr6 44934837 44934880 -104582157 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 927 4446 139 74 13 chr6 44935099 44935773 -104581264 + L1Md_F LINE L1 407 1112 -5504 6 927 746 82 0 107 chr6 44935773 44935923 -104581114 + L1Md_F2 LINE L1 6449 6582 0 6 927 28533 96 12 3 chr6 44935923 44940190 -104576847 + L1Md_F LINE L1 1113 5428 -455 6 927 1857 88 0 11 chr6 44940190 44940456 -104576581 + L1Md_F2 LINE L1 6320 6582 0 6 927 1236 161 4 30 chr6 44940464 44940695 -104576342 - Lx2B LINE L1 -1075 5925 5701 6 927 6137 131 43 18 chr6 44940695 44941761 -104575276 + Lx2B LINE L1 5903 6995 -5 6 927 1238 293 33 11 chr6 44942066 44942425 -104574612 + MTE2b LTR MaLR 4 370 -9 6 927 4540 82 0 0 chr6 44943404 44944003 -104573034 + L1Md_T LINE L1 5984 6582 0 6 927 23 0 0 0 chr6 44944003 44944026 -104573011 + AT_rich Low_complexity Low_complexity 1 23 0 6 927 412 201 112 0 chr6 44946503 44946637 -104570400 - Lx9 LINE L1 -87 7557 7409 6 927 22 0 0 0 chr6 44946885 44946907 -104570130 + AT_rich Low_complexity Low_complexity 1 22 0 6 927 364 376 72 18 chr6 44947097 44947319 -104569718 + Lx8 LINE L1 7047 7280 -193 6 927 21 0 0 0 chr6 44948801 44948822 -104568215 + AT_rich Low_complexity Low_complexity 1 21 0 6 927 46 54 0 0 chr6 44948853 44948927 -104568110 + AT_rich Low_complexity Low_complexity 1 74 0 6 927 3347 90 0 9 chr6 44949043 44949502 -104567535 - L1_Mus1 LINE L1 0 6567 6113 6 927 6925 193 17 19 chr6 44949898 44951281 -104565756 - Lx2 LINE L1 -1 6996 5618 6 927 3426 192 27 1 chr6 44951281 44951989 -104565048 - Lx2 LINE L1 -1485 4392 3667 6 927 23 33 0 0 chr6 44952025 44952055 -104564982 + AT_rich Low_complexity Low_complexity 1 30 0 6 927 21 57 0 0 chr6 44952070 44952105 -104564932 + AT_rich Low_complexity Low_complexity 1 35 0 6 927 390 190 10 10 chr6 44952108 44952209 -104564828 - Lx3A LINE L1 -3 6978 6878 6 927 1632 35 0 0 chr6 44952209 44952411 -104564626 - L1Md_A LINE L1 0 6582 6381 6 927 7656 124 38 28 chr6 44952412 44953386 -104563651 - Lx3A LINE L1 -109 6872 5916 6 927 558 0 0 0 chr6 44953386 44953448 -104563589 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 927 14941 97 36 5 chr6 44953448 44954694 -104562343 - Lx3A LINE L1 -1066 5915 4638 6 927 245 29 0 29 chr6 44954694 44954729 -104562308 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 927 14941 96 36 4 chr6 44954729 44955715 -104561322 - Lx3A LINE L1 -1249 4637 3607 6 927 334 339 58 79 chr6 44956596 44956785 -104560252 - B2_Mm2 SINE B2 -10 185 1 6 115 1453 356 15 9 chr6 44957673 44958322 -104558715 - Lx8 LINE L1 -471 7002 6350 6 928 427 287 11 58 chr6 44958319 44958493 -104558544 - Lx LINE L1 -494 7150 6985 6 928 336 169 42 0 chr6 44958492 44958563 -104558474 + Lx9 LINE L1 7392 7465 -179 6 928 392 323 30 15 chr6 44959558 44959693 -104557344 - B1F SINE Alu 0 149 13 6 928 688 245 5 23 chr6 44959767 44959946 -104557091 - B3 SINE B2 -24 171 4 6 928 416 321 9 0 chr6 44960245 44960354 -104556683 - RSINE1 SINE B4 -45 120 11 6 928 265 128 0 0 chr6 44960424 44960463 -104556574 - U2 snRNA snRNA -149 39 1 6 928 3495 215 28 26 chr6 44961128 44962399 -104554638 - Lx LINE L1 -1 6653 5381 6 928 576 141 0 0 chr6 44962397 44962489 -104554548 + L1_Mur2 LINE L1 4515 4606 -1280 6 928 1474 178 40 0 chr6 44962543 44962847 -104554190 + L1_Mur2 LINE L1 5043 5358 -519 6 928 339 25 0 0 chr6 44964103 44964143 -104552894 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 928 5025 46 63 3 chr6 44964798 44965446 -104551591 - L1Md_F2 LINE L1 0 6582 5896 6 928 2289 37 13 42 chr6 44965446 44965754 -104551283 + L1Md_F2 LINE L1 5624 5922 -660 6 928 261 347 48 16 chr6 44965812 44965938 -104551099 - RMER15 LTR ERVL -24 551 422 6 928 457 283 44 38 chr6 44966260 44966418 -104550619 - RLTR14 LTR ERV1 0 382 224 6 928 746 300 141 33 chr6 44966915 44967249 -104549788 - ORR1D2 LTR MaLR 0 370 1 6 928 22 0 0 0 chr6 44967362 44967384 -104549653 + AT_rich Low_complexity Low_complexity 1 22 0 6 928 334 372 58 0 chr6 44967714 44967851 -104549186 + RSINE1 SINE B4 8 152 -13 6 928 728 297 79 17 chr6 44968155 44968468 -104548569 + MTD LTR MaLR 25 363 -56 6 928 207 214 0 0 chr6 44968492 44968534 -104548503 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 928 1346 96 24 5 chr6 44969443 44969652 -104547385 + Lx LINE L1 6441 6653 -1 6 928 366 350 32 24 chr6 44969921 44970047 -104546990 + RSINE1 SINE B4 20 146 -19 6 928 261 83 0 0 chr6 44970066 44970102 -104546935 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 928 32 0 0 0 chr6 44970763 44970795 -104546242 + AT_rich Low_complexity Low_complexity 1 32 0 6 928 588 14 0 0 chr6 44971293 44971362 -104545675 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 6 928 209 163 20 0 chr6 44971362 44971411 -104545626 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 6 928 515 216 0 0 chr6 44972257 44972359 -104544678 + Lx5 LINE L1 6529 6630 -420 6 928 304 261 11 11 chr6 44972355 44972444 -104544593 + Lx2B LINE L1 6898 6986 -14 6 928 244 219 24 0 chr6 44972526 44972608 -104544429 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 928 34 24 0 0 chr6 44972747 44972788 -104544249 + AT_rich Low_complexity Low_complexity 1 41 0 6 928 35 83 0 0 chr6 44972819 44972903 -104544134 + AT_rich Low_complexity Low_complexity 1 84 0 6 928 4321 114 19 32 chr6 44972951 44973697 -104543340 - RMER17A LTR ERVK -15 736 1 6 928 26 0 0 0 chr6 44973782 44973808 -104543229 + AT_rich Low_complexity Low_complexity 1 26 0 6 928 1142 58 0 0 chr6 44973818 44973957 -104543080 - B1_Mus2 SINE Alu -8 139 1 6 928 321 381 22 11 chr6 44974008 44974186 -104542851 - Lx8 LINE L1 -198 7275 7096 6 928 24 77 0 0 chr6 44974574 44974626 -104542411 + AT_rich Low_complexity Low_complexity 1 52 0 6 928 367 193 74 16 chr6 44976825 44976946 -104540091 - Lx9 LINE L1 0 7644 7517 6 928 895 293 57 99 chr6 44978100 44978524 -104538513 + MTD LTR MaLR 2 407 -12 6 928 270 0 0 0 chr6 44978628 44978658 -104538379 + (CAT)n Simple_repeat Simple_repeat 3 32 0 6 928 488 16 16 0 chr6 44978658 44978719 -104538318 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 928 256 385 80 10 chr6 44978846 44979148 -104537889 + MER63B DNA AcHobo 86 408 -28 6 928 1353 308 77 28 chr6 44980604 44981751 -104535286 - Lx6 LINE L1 0 7460 5832 6 928 413 318 88 31 chr6 44981918 44982373 -104534664 - L1MA6 LINE L1 -465 5835 5355 6 928 817 269 30 5 chr6 44982395 44982593 -104534444 + B3 SINE B2 3 205 -11 6 928 888 293 36 52 chr6 44982676 44983309 -104533728 - L1MA6 LINE L1 -868 5275 4653 6 928 441 0 0 0 chr6 44985355 44985404 -104531633 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 928 1496 215 76 29 chr6 44985479 44985887 -104531150 - RMER1C Other Other -12 1330 904 6 928 850 373 24 63 chr6 44986584 44986758 -104530279 + Lx8 LINE L1 6832 6982 -491 6 928 675 131 58 0 chr6 44986758 44986895 -104530142 + Lx2 LINE L1 6851 6995 -2 6 928 850 373 24 63 chr6 44986895 44987224 -104529813 + Lx8 LINE L1 6983 7315 -158 6 928 297 0 0 0 chr6 44987226 44987259 -104529778 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 928 21 36 0 0 chr6 44987384 44987412 -104529625 + AT_rich Low_complexity Low_complexity 1 28 0 6 928 29 0 0 0 chr6 44987489 44987518 -104529519 + AT_rich Low_complexity Low_complexity 1 29 0 6 928 436 325 117 0 chr6 44987624 44987812 -104529225 + B3 SINE B2 1 210 -6 6 928 577 291 23 64 chr6 44988164 44988384 -104528653 - B3A SINE B2 -2 214 4 6 928 1046 293 60 6 chr6 44988444 44988760 -104528277 - Lx5 LINE L1 -7 7043 6711 6 928 963 227 77 36 chr6 44990426 44990778 -104526259 + MTD LTR MaLR 50 405 -14 7 928 411 21 0 0 chr6 44991320 44991368 -104525669 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 928 403 365 37 74 chr6 44992024 44992323 -104524714 - MLT1B LTR MaLR -21 369 82 7 928 382 323 82 91 chr6 44993044 44993277 -104523760 - L1MB7 LINE L1 -177 6007 5789 7 928 468 0 0 0 chr6 44993277 44993329 -104523708 + (TA)n Simple_repeat Simple_repeat 1 52 0 7 928 382 323 82 91 chr6 44993329 44993468 -104523569 - L1MB7 LINE L1 -396 5788 5655 7 928 2945 68 7 20 chr6 44993468 44993874 -104523163 + L1_Mus2 LINE L1 6166 6566 0 7 928 382 294 56 73 chr6 44993874 44994240 -104522797 - L1MB7 LINE L1 -530 5654 5281 7 928 230 167 55 18 chr6 44994241 44994296 -104522741 - L1M3 LINE L1 -373 5924 5868 7 928 345 280 36 17 chr6 44994328 44994558 -104522479 - L1M3 LINE L1 -720 5571 5336 7 928 36 70 0 0 chr6 44995923 44995994 -104521043 + AT_rich Low_complexity Low_complexity 1 71 0 7 928 28 29 0 0 chr6 44996402 44996437 -104520600 + AT_rich Low_complexity Low_complexity 1 35 0 7 928 405 54 0 0 chr6 44996721 44996777 -104520260 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 928 423 0 0 0 chr6 44996777 44996823 -104520214 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 928 284 350 63 103 chr6 44997631 44997883 -104519154 + ORR1E LTR MaLR 105 346 -13 7 928 25 0 0 0 chr6 44999012 44999037 -104518000 + AT_rich Low_complexity Low_complexity 1 25 0 7 928 326 23 23 0 chr6 44999326 44999369 -104517668 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 928 272 128 0 21 chr6 44999406 44999454 -104517583 - Lx5 LINE L1 -1047 6003 5957 7 928 22 0 0 0 chr6 44999568 44999590 -104517447 + AT_rich Low_complexity Low_complexity 1 22 0 7 928 1210 179 5 0 chr6 44999804 45000000 -104517037 + Lx2B LINE L1 6455 6651 -349 7 928 965 183 6 133 chr6 45000000 45000369 -104516668 + Lx2B LINE L1 6652 6980 -17 1 928 598 128 78 0 chr6 45001414 45001516 -104515521 + RMER6C LTR ERVK 1 110 -580 2 928 418 252 0 130 chr6 45001501 45001624 -104515413 + MT2B LTR ERVL 181 287 -314 3 928 299 285 112 42 chr6 45001522 45001665 -104515372 + RLTR25A LTR ERVK 521 673 -430 4 928 726 58 16 24 chr6 45001723 45001847 -104515190 + L1Md_F3 LINE L1 6462 6584 0 5 928 23 0 0 0 chr6 45003721 45003744 -104513293 + AT_rich Low_complexity Low_complexity 1 23 0 6 928 539 238 105 25 chr6 45004367 45004568 -104512469 + B3A SINE B2 1 193 -2 7 928 1826 317 128 35 chr6 45004572 45005525 -104511512 + Lx9 LINE L1 6397 7438 -206 8 928 363 23 0 0 chr6 45005561 45005605 -104511432 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 928 461 71 14 0 chr6 45005824 45005894 -104511143 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 928 1177 129 29 5 chr6 45005975 45006185 -104510852 - Lx LINE L1 -1 6653 6439 1 928 334 360 96 45 chr6 45006532 45006689 -104510348 - B3 SINE B2 -23 193 29 1 928 432 0 0 0 chr6 45008925 45008973 -104508064 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 928 624 62 0 0 chr6 45009461 45009542 -104507495 + (GGA)n Simple_repeat Simple_repeat 3 83 0 1 928 21 0 0 0 chr6 45012096 45012117 -104504920 + AT_rich Low_complexity Low_complexity 1 21 0 1 928 26 64 0 0 chr6 45013159 45013206 -104503831 + AT_rich Low_complexity Low_complexity 1 47 0 1 928 23 33 0 0 chr6 45014045 45014075 -104502962 + AT_rich Low_complexity Low_complexity 1 30 0 1 928 606 387 14 0 chr6 45014075 45014287 -104502750 + B4A SINE B4 3 217 -75 1 928 1047 262 95 11 chr6 45014426 45014639 -104502398 + Lx9 LINE L1 7254 7472 -172 1 928 646 12 24 0 chr6 45014639 45014722 -104502315 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 2 928 1047 262 95 11 chr6 45014722 45014867 -104502170 + Lx9 LINE L1 7473 7641 -3 1 928 22 0 0 0 chr6 45015857 45015879 -104501158 + AT_rich Low_complexity Low_complexity 1 22 0 2 928 904 71 0 0 chr6 45017364 45017490 -104499547 + B1_Mm SINE Alu 9 134 -13 2 928 242 29 29 0 chr6 45017490 45017525 -104499512 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 928 23 33 0 0 chr6 45017669 45017699 -104499338 + AT_rich Low_complexity Low_complexity 1 30 0 2 928 485 243 9 53 chr6 45018289 45018402 -104498635 + B1_Mur2 SINE Alu 7 114 -35 2 928 1046 131 11 0 chr6 45018408 45018584 -104498453 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 2 928 342 0 0 0 chr6 45018584 45018622 -104498415 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 928 227 204 0 69 chr6 45018753 45018811 -104498226 - MIRc SINE MIR -127 141 88 2 928 629 290 104 16 chr6 45019868 45020310 -104496727 - L1MA8 LINE L1 -307 5993 5505 2 928 464 258 153 23 chr6 45021278 45021409 -104495628 - B1_Mur2 SINE Alu -1 148 1 3 928 601 256 93 25 chr6 45022994 45023198 -104493839 - Lx9 LINE L1 -227 7417 7200 3 928 210 147 0 0 chr6 45023244 45023278 -104493759 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 928 268 220 144 18 chr6 45023278 45023389 -104493648 + Lx9 LINE L1 7520 7644 0 3 928 388 364 68 0 chr6 45023395 45023527 -104493510 + B4 SINE B4 83 223 -69 3 928 24 0 0 0 chr6 45023698 45023722 -104493315 + AT_rich Low_complexity Low_complexity 1 24 0 3 928 674 195 193 10 chr6 45023722 45023914 -104493123 - Lx3C LINE L1 -2 6974 6748 3 928 814 163 7 0 chr6 45023915 45024050 -104492987 + B2_Mm2 SINE B2 2 137 -58 3 928 182 256 0 23 chr6 45024420 45024464 -104492573 - L2 LINE L2 -1907 1512 1470 3 928 226 51 0 49 chr6 45024503 45024544 -104492493 + L1Md_T LINE L1 6532 6570 -12 3 928 420 381 7 26 chr6 45024739 45024890 -104492147 + B4 SINE B4 28 175 -117 4 928 513 84 0 0 chr6 45026166 45026237 -104490800 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 928 571 313 148 11 chr6 45026776 45027054 -104489983 - RMER15 LTR ERVL 0 575 260 4 928 279 290 80 45 chr6 45027042 45027154 -104489883 - RMER15 LTR ERVL -431 144 29 4 928 559 216 41 105 chr6 45027228 45027444 -104489593 + Lx4B LINE L1 6882 7058 0 4 928 258 32 0 0 chr6 45028418 45028449 -104488588 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 4 928 21 36 0 0 chr6 45028982 45029010 -104488027 + AT_rich Low_complexity Low_complexity 1 28 0 4 928 387 256 37 81 chr6 45029112 45029248 -104487789 + RSINE1 SINE B4 1 130 -35 4 928 932 244 77 65 chr6 45029615 45029746 -104487291 + Lx7 LINE L1 7237 7379 -317 4 928 2269 206 45 96 chr6 45029746 45030320 -104486717 - RMER17D2 LTR ERVK 0 809 304 4 928 808 79 16 0 chr6 45030320 45030446 -104486591 + (GA)n Simple_repeat Simple_repeat 2 129 0 4 928 2269 206 45 96 chr6 45030446 45030724 -104486313 - RMER17D2 LTR ERVK -506 303 1 4 928 932 253 78 63 chr6 45030724 45031059 -104485978 + Lx7 LINE L1 7111 7671 -25 4 928 22 0 0 0 chr6 45032648 45032670 -104484367 + AT_rich Low_complexity Low_complexity 1 22 0 5 928 1036 115 0 0 chr6 45034994 45035142 -104481895 - B1_Mus1 SINE Alu 0 148 1 5 928 284 266 10 21 chr6 45035204 45035300 -104481737 + (TATATG)n Simple_repeat Simple_repeat 4 98 0 5 928 396 310 176 32 chr6 45035439 45035752 -104481285 + ORR1E LTR MaLR 2 359 0 5 928 183 80 0 0 chr6 45036141 45036166 -104480871 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 928 765 85 0 0 chr6 45036171 45036277 -104480760 + (GA)n Simple_repeat Simple_repeat 2 107 0 5 928 296 363 80 0 chr6 45036316 45036429 -104480608 - ID_B1 SINE B4 -102 122 1 5 928 240 35 0 0 chr6 45039255 45039284 -104477753 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 928 254 408 0 0 chr6 45040057 45040155 -104476882 + PB1D10 SINE Alu 10 107 -10 5 928 2842 51 3 0 chr6 45040211 45040565 -104476472 - L1Md_F2 LINE L1 -265 6317 5963 5 928 1859 93 0 24 chr6 45040566 45040853 -104476184 + L1Md_F2 LINE L1 6303 6582 0 5 928 21 71 0 0 chr6 45041675 45041717 -104475320 + AT_rich Low_complexity Low_complexity 1 42 0 6 928 205 186 0 0 chr6 45042703 45042746 -104474291 + T-rich Low_complexity Low_complexity 1 43 0 6 928 22 0 0 0 chr6 45043553 45043575 -104473462 + AT_rich Low_complexity Low_complexity 1 22 0 6 928 215 200 97 32 chr6 45043666 45043728 -104473309 - L2c LINE L2 -92 3334 3258 6 928 21 36 0 0 chr6 45045431 45045459 -104471578 + AT_rich Low_complexity Low_complexity 1 28 0 6 928 302 0 0 86 chr6 45045719 45045777 -104471260 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 6 928 296 297 120 29 chr6 45046472 45046680 -104470357 + L1M5 LINE L1 4736 4962 -1184 6 928 284 264 200 45 chr6 45047113 45047403 -104469634 + L1M5 LINE L1 5407 5741 -703 6 928 280 119 17 17 chr6 45048040 45048100 -104468937 + CT-rich Low_complexity Low_complexity 2 61 0 6 928 210 71 0 0 chr6 45048125 45048153 -104468884 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 928 4799 137 33 5 chr6 45048159 45048997 -104468040 - Lx LINE L1 -7 6647 5786 6 928 6842 128 18 6 chr6 45049016 45050460 -104466577 - L1_Mus3 LINE L1 0 6638 5177 7 928 500 258 30 21 chr6 45050535 45050745 -104466292 + L1_Rod LINE L1 2488 2710 -3137 7 928 477 80 0 0 chr6 45051274 45051349 -104465688 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 7 928 342 108 27 13 chr6 45051386 45051461 -104465576 + (CATA)n Simple_repeat Simple_repeat 2 77 0 7 928 513 0 0 0 chr6 45053102 45053159 -104463878 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 928 23 0 0 0 chr6 45053322 45053345 -104463692 + AT_rich Low_complexity Low_complexity 1 23 0 7 928 3080 75 29 29 chr6 45053496 45053947 -104463090 + L1Md_F2 LINE L1 6131 6581 -1 7 928 2298 137 46 3 chr6 45054013 45054402 -104462635 - Lx2A LINE L1 -5 7003 6598 7 928 255 281 45 12 chr6 45054404 45054578 -104462459 - L1MA9 LINE L1 -338 5953 5782 7 928 1002 126 92 0 chr6 45054617 45054791 -104462246 - Lx2 LINE L1 -14 6983 6794 7 928 1311 137 5 14 chr6 45054792 45055000 -104462037 - Lx2 LINE L1 -356 6641 6436 7 928 774 114 9 0 chr6 45054992 45055106 -104461931 + Lx2 LINE L1 6335 6449 -548 7 928 370 326 57 0 chr6 45055125 45055266 -104461771 - L1MA9 LINE L1 -592 5720 5572 7 928 539 164 62 15 chr6 45055273 45055403 -104461634 - Lx LINE L1 0 6654 6519 8 928 229 204 0 36 chr6 45057540 45057596 -104459441 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 8 928 524 326 7 0 chr6 45057600 45057747 -104459290 - RSINE1 SINE B4 -15 150 3 8 928 423 0 0 0 chr6 45057810 45057857 -104459180 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 928 7254 111 9 3 chr6 45058322 45059473 -104457564 + L1_Mus4 LINE L1 5481 6616 -20 8 928 518 346 98 8 chr6 45059823 45060059 -104456978 + MER2 DNA MER2_type 86 342 -3 8 928 360 354 39 0 chr6 45060655 45060782 -104456255 + ID_B1 SINE B4 85 216 -8 8 928 525 49 37 0 chr6 45061576 45061657 -104455380 + (TA)n Simple_repeat Simple_repeat 2 85 0 8 928 392 84 0 14 chr6 45061989 45062061 -104454976 - L1_Mus2 LINE L1 -2 6564 6494 8 928 310 308 27 116 chr6 45062533 45062680 -104454357 + MER2B DNA MER2_type 203 336 0 8 928 21 57 0 0 chr6 45064042 45064077 -104452960 + AT_rich Low_complexity Low_complexity 1 35 0 9 928 224 370 12 0 chr6 45064328 45064409 -104452628 + ID SINE ID 1 82 -142 9 928 228 169 32 63 chr6 45066070 45066133 -104450904 + CT-rich Low_complexity Low_complexity 5 65 0 9 928 22 56 0 0 chr6 45068565 45068601 -104448436 + AT_rich Low_complexity Low_complexity 1 36 0 9 928 22 80 0 0 chr6 45071553 45071603 -104445434 + AT_rich Low_complexity Low_complexity 1 50 0 9 928 288 68 16 48 chr6 45071927 45071989 -104445048 + (CAAAAA)n Simple_repeat Simple_repeat 3 62 0 9 928 216 0 0 0 chr6 45072727 45072751 -104444286 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 928 357 24 0 0 chr6 45073964 45074006 -104443031 + (TA)n Simple_repeat Simple_repeat 2 43 0 9 928 1651 20 0 5 chr6 45075072 45075274 -104441763 + L1Md_F3 LINE L1 6368 6568 -16 9 928 252 0 0 0 chr6 45075640 45075668 -104441369 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 928 960 339 83 8 chr6 45077085 45077436 -104439601 + MTEa LTR MaLR 1 377 -2 1 928 23 33 0 0 chr6 45077740 45077770 -104439267 + AT_rich Low_complexity Low_complexity 1 30 0 1 928 1631 51 0 0 chr6 45079509 45079704 -104437333 - L1Md_F2 LINE L1 -320 6262 6068 1 928 2439 72 0 6 chr6 45079704 45080037 -104437000 + L1Md_F2 LINE L1 6252 6582 0 1 928 1000 109 7 7 chr6 45080039 45080174 -104436863 + B1_Mus1 SINE Alu 2 137 -11 1 928 315 0 0 0 chr6 45080174 45080209 -104436828 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 928 1000 109 7 7 chr6 45080209 45080220 -104436817 + B1_Mus1 SINE Alu 138 148 0 1 928 26 0 0 0 chr6 45081917 45081943 -104435094 + AT_rich Low_complexity Low_complexity 1 26 0 1 928 1842 291 45 43 chr6 45085734 45086362 -104430675 + Lx5 LINE L1 6454 7046 -4 1 928 225 154 0 0 chr6 45086750 45086789 -104430248 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 928 22 0 0 0 chr6 45087027 45087049 -104429988 + AT_rich Low_complexity Low_complexity 1 22 0 1 928 4240 106 8 0 chr6 45087740 45088363 -104428674 - Lx LINE L1 -3 6651 6024 1 928 21 36 0 0 chr6 45088668 45088696 -104428341 + AT_rich Low_complexity Low_complexity 1 28 0 1 929 285 359 75 64 chr6 45088882 45089162 -104427875 + LFSINE_Vert SINE SINE 136 418 -41 1 929 829 331 51 25 chr6 45089352 45089746 -104427291 - MTD LTR MaLR -15 404 1 1 929 913 162 9 0 chr6 45089775 45089989 -104427048 + GA-rich Low_complexity Low_complexity 1 215 0 1 929 324 48 0 0 chr6 45091620 45091662 -104425375 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 929 24 0 0 0 chr6 45092894 45092918 -104424119 + AT_rich Low_complexity Low_complexity 1 24 0 1 929 198 0 0 0 chr6 45092918 45092940 -104424097 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1 929 1941 203 35 22 chr6 45092957 45093415 -104423622 - Lx4B LINE L1 -38 7020 6557 1 929 468 0 0 0 chr6 45094099 45094151 -104422886 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 929 232 302 33 0 chr6 45094164 45094233 -104422804 + Arthur1C DNA Tip100 2 72 -291 1 929 587 386 54 31 chr6 45095974 45096364 -104420673 - LTR16C LTR ERVL -11 478 80 1 929 207 69 0 0 chr6 45097316 45097345 -104419692 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 929 509 243 0 10 chr6 45097579 45097701 -104419336 + B1_Mur4 SINE Alu 37 148 -2 1 929 315 0 0 0 chr6 45097701 45097736 -104419301 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 929 438 309 99 17 chr6 45098974 45099155 -104417882 - MIR3 SINE MIR -11 197 2 1 929 6027 209 38 33 chr6 45100924 45102507 -104414530 - Lx5 LINE L1 -44 7006 5406 1 929 1576 77 8 13 chr6 45102509 45102745 -104414292 + L1_Mus3 LINE L1 6404 6638 0 1 929 263 250 12 0 chr6 45103826 45103910 -104413127 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 1 929 4356 159 52 12 chr6 45104389 45106134 -104410903 - Lx3A LINE L1 -135 6874 5482 1 929 21 0 0 0 chr6 45106223 45106244 -104410793 + AT_rich Low_complexity Low_complexity 1 21 0 1 929 33 56 0 0 chr6 45106408 45106462 -104410575 + AT_rich Low_complexity Low_complexity 1 54 0 1 929 325 262 99 125 chr6 45106468 45106660 -104410377 + B2_Mm2 SINE B2 6 192 -3 1 929 5181 40 9 0 chr6 45106679 45107310 -104409727 + L1Md_T LINE L1 5946 6582 0 1 929 375 191 0 0 chr6 45107441 45107504 -104409533 + L1M2 LINE L1 5628 5690 -601 1 929 652 224 0 0 chr6 45108682 45108807 -104408230 - B3 SINE B2 -89 127 3 1 929 204 143 0 0 chr6 45108820 45108862 -104408175 + (A)n Simple_repeat Simple_repeat 1 42 0 1 929 3056 87 5 5 chr6 45109677 45110093 -104406944 - L1Md_F2 LINE L1 -106 6476 6061 1 929 2170 77 3 0 chr6 45110093 45110391 -104406646 - L1_Mm LINE L1 -2168 3715 3417 1 929 1262 228 35 103 chr6 45111849 45112245 -104404792 + ORR1D2 LTR MaLR 1 369 -1 1 929 568 347 70 33 chr6 45112447 45112718 -104404319 - B4A SINE B4 -1 291 11 1 929 324 0 0 0 chr6 45112855 45112891 -104404146 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 1 929 525 135 0 0 chr6 45112891 45112980 -104404057 + (TCCC)n Simple_repeat Simple_repeat 4 92 0 1 929 430 198 40 0 chr6 45114176 45114277 -104402760 - Lx3B LINE L1 -3 6970 6866 1 929 1837 130 0 7 chr6 45114283 45114562 -104402475 + Lx3C LINE L1 6116 6392 -584 1 929 229 425 32 7 chr6 45114960 45115114 -104401923 - Lx8 LINE L1 -173 7300 7143 1 929 605 397 43 23 chr6 45115299 45115557 -104401480 - B4A SINE B4 -8 284 22 1 929 205 160 40 0 chr6 45117143 45117193 -104399844 + T-rich Low_complexity Low_complexity 3 54 0 1 929 1122 180 52 0 chr6 45117592 45117786 -104399251 + MTB_Mm LTR MaLR 149 352 -55 1 929 41056 6 0 0 chr6 45118215 45124793 -104392244 - L1Md_A LINE L1 0 6582 5 1 929 25 0 0 0 chr6 45125537 45125562 -104391475 + AT_rich Low_complexity Low_complexity 1 25 0 1 929 34 99 0 0 chr6 45126152 45126263 -104390774 + AT_rich Low_complexity Low_complexity 1 111 0 1 929 435 306 8 24 chr6 45126566 45126690 -104390347 + B3A SINE B2 6 127 -71 1 929 513 0 0 0 chr6 45126730 45126787 -104390250 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1 929 276 306 17 35 chr6 45127301 45127416 -104389621 + MIRb SINE MIR 92 204 -64 1 929 28 48 0 0 chr6 45127929 45127971 -104389066 + AT_rich Low_complexity Low_complexity 1 42 0 1 929 8754 113 25 8 chr6 45127971 45129812 -104387225 - Lx3A LINE L1 -11 6970 5095 1 929 22 70 0 0 chr6 45129945 45129988 -104387049 + AT_rich Low_complexity Low_complexity 1 43 0 1 929 460 316 103 88 chr6 45129988 45130445 -104386592 - Lx8 LINE L1 -7 7466 7003 1 929 245 100 0 20 chr6 45130477 45130528 -104386509 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 1 929 1119 82 0 0 chr6 45130528 45130675 -104386362 - B1_Mus1 SINE Alu 0 148 2 1 929 393 253 0 59 chr6 45130677 45130778 -104386259 - Lx8 LINE L1 -458 7015 6921 1 929 203 261 0 0 chr6 45131078 45131124 -104385913 + GA-rich Low_complexity Low_complexity 2 47 0 1 929 22 56 0 0 chr6 45131500 45131536 -104385501 + AT_rich Low_complexity Low_complexity 1 36 0 1 929 1296 173 77 0 chr6 45132816 45132827 -104384210 + Lx4A LINE L1 6194 6205 -853 1 929 2854 213 20 16 chr6 45132827 45133437 -104383600 - Lx4B LINE L1 -3 7055 6444 1 929 1296 182 75 1 chr6 45133437 45133689 -104383348 + Lx4A LINE L1 6206 6481 -516 1 929 29 0 0 0 chr6 45133694 45133723 -104383314 + AT_rich Low_complexity Low_complexity 1 29 0 1 929 437 381 11 11 chr6 45133838 45134021 -104383016 - B3A SINE B2 -10 188 6 1 929 6287 160 54 33 chr6 45134197 45136203 -104380834 - Lx LINE L1 -2 6995 4979 1 929 372 295 53 29 chr6 45136387 45136631 -104380406 + Lx9 LINE L1 7246 7495 -149 1 929 526 309 107 44 chr6 45137983 45138301 -104378736 + MER2 DNA MER2_type 8 345 0 1 929 22 56 0 0 chr6 45139130 45139166 -104377871 + AT_rich Low_complexity Low_complexity 1 36 0 1 929 202 245 0 86 chr6 45139186 45139244 -104377793 + L3 LINE CR1 143 195 -4294 1 929 966 110 21 0 chr6 45139672 45139817 -104377220 - B1_Mus1 SINE Alu 0 148 1 1 929 304 302 139 64 chr6 45141432 45141605 -104375432 - RCHARR1 DNA MER1_type -788 186 1 1 929 201 39 0 0 chr6 45145198 45145224 -104371813 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 929 821 130 0 14 chr6 45145443 45145591 -104371446 - L1_Mus4 LINE L1 -6 6630 6485 1 929 1935 135 43 0 chr6 45145591 45145895 -104371142 + L1_Mus4 LINE L1 6156 6472 -164 1 929 21 0 0 0 chr6 45146203 45146224 -104370813 + AT_rich Low_complexity Low_complexity 1 21 0 1 929 241 281 0 33 chr6 45146396 45146488 -104370549 + CT-rich Low_complexity Low_complexity 4 92 0 1 929 191 114 0 28 chr6 45147339 45147375 -104369662 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 929 3383 147 34 5 chr6 45148495 45149061 -104367976 - MT2B2 LTR ERVL -2 582 1 1 929 616 325 119 49 chr6 45149307 45149516 -104367521 - MTD LTR MaLR 0 419 194 1 929 1067 134 0 6 chr6 45149516 45149696 -104367341 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1 929 616 325 119 49 chr6 45149696 45149874 -104367163 - MTD LTR MaLR -226 193 5 1 929 3660 51 2 2 chr6 45151497 45151952 -104365085 + L1Md_F2 LINE L1 6114 6568 -14 1 929 279 355 45 9 chr6 45153193 45153304 -104363733 - B1F1 SINE Alu -33 116 2 1 929 2443 168 30 0 chr6 45153457 45153828 -104363209 + Lx2A1 LINE L1 6556 6939 -69 1 929 321 26 0 0 chr6 45153828 45153866 -104363171 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 929 2443 168 30 0 chr6 45153866 45153934 -104363103 + Lx2A1 LINE L1 6940 7007 -1 1 929 1042 225 56 23 chr6 45154055 45154360 -104362677 + Lx7 LINE L1 7382 7696 0 1 929 216 0 0 0 chr6 45155900 45155924 -104361113 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 929 24 0 0 0 chr6 45156015 45156039 -104360998 + AT_rich Low_complexity Low_complexity 1 24 0 1 929 1163 63 0 0 chr6 45158287 45158429 -104358608 + B1_Mus2 SINE Alu 1 142 -5 1 929 210 37 0 0 chr6 45158432 45158459 -104358578 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 929 674 268 0 0 chr6 45159213 45159355 -104357682 + B1_Mur2 SINE Alu 1 142 -7 1 929 21 0 0 0 chr6 45159970 45159991 -104357046 + AT_rich Low_complexity Low_complexity 1 21 0 1 929 236 274 236 16 chr6 45160311 45160493 -104356544 + Charlie7 DNA MER1_type 458 679 -1933 1 929 433 353 15 8 chr6 45161535 45161669 -104355368 - ID_B1 SINE B4 -6 218 84 1 929 4028 67 0 0 chr6 45162738 45163247 -104353790 + L1_Mus1 LINE L1 6059 6567 0 1 929 189 341 106 0 chr6 45163494 45163579 -104353458 + MIR3 SINE MIR 92 185 -23 1 929 269 330 35 9 chr6 45163792 45163908 -104353129 + L2 LINE L2 2775 2893 -526 1 929 271 175 67 111 chr6 45164655 45164745 -104352292 + MTE2a LTR MaLR 294 379 0 1 929 679 301 6 0 chr6 45166171 45166344 -104350693 - B3 SINE B2 -9 207 34 1 929 200 59 29 0 chr6 45166349 45166383 -104350654 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 929 407 93 0 0 chr6 45166436 45166490 -104350547 + L1_Mus2 LINE L1 6220 6273 -293 2 929 231 353 58 12 chr6 45167944 45168030 -104349007 + RSINE1 SINE B4 6 95 -70 2 929 471 100 0 0 chr6 45168087 45168157 -104348880 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 929 415 152 101 0 chr6 45168158 45168316 -104348721 + (TAGA)n Simple_repeat Simple_repeat 2 175 0 2 929 928 297 39 88 chr6 45169240 45169353 -104347684 + MTD LTR MaLR 13 115 -304 2 929 216 0 0 0 chr6 45169353 45169377 -104347660 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 2 929 928 298 43 83 chr6 45169377 45169686 -104347351 + MTD LTR MaLR 116 403 -4 2 929 24 32 0 0 chr6 45169726 45169757 -104347280 + AT_rich Low_complexity Low_complexity 1 31 0 2 929 971 86 50 0 chr6 45169784 45169923 -104347114 - B1_Mus2 SINE Alu 0 147 2 2 929 21 71 0 0 chr6 45171257 45171299 -104345738 + AT_rich Low_complexity Low_complexity 1 42 0 2 929 794 317 99 7 chr6 45171485 45171837 -104345200 + MTC LTR MaLR 21 379 0 2 929 621 283 35 0 chr6 45171877 45172075 -104344962 - B3 SINE B2 -10 206 2 2 929 513 0 0 0 chr6 45172186 45172243 -104344794 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 929 534 16 0 0 chr6 45172243 45172305 -104344732 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 929 393 307 134 20 chr6 45172305 45172551 -104344486 - Lx9 LINE L1 -180 7464 7191 2 929 2080 127 83 0 chr6 45172651 45173001 -104344036 + Lx3A LINE L1 6587 6966 -15 2 929 198 0 0 0 chr6 45173001 45173023 -104344014 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2 929 2080 127 83 0 chr6 45173023 45173034 -104344003 + Lx3A LINE L1 6967 6977 -4 2 929 324 339 9 26 chr6 45173104 45173219 -104343818 + B4 SINE B4 169 281 -11 2 929 309 51 0 0 chr6 45173708 45173747 -104343290 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 929 221 256 0 0 chr6 45175185 45175228 -104341809 - L4 LINE RTE -205 1824 1782 2 929 2429 127 28 8 chr6 45175245 45175641 -104341396 - L1_Mur1 LINE L1 -263 5623 5220 2 929 5734 139 19 20 chr6 45175644 45176666 -104340371 + L1_Mur1 LINE L1 4064 5084 -802 2 929 908 122 29 0 chr6 45176666 45176805 -104340232 + B2_Mm1t SINE B2 45 187 -6 2 929 1043 199 131 11 chr6 45176838 45177112 -104339925 + Lx2B LINE L1 6694 7000 0 2 929 707 214 71 0 chr6 45177132 45177272 -104339765 - Lx5 LINE L1 -497 6553 6404 2 929 1594 203 7 3 chr6 45177270 45177572 -104339465 - Lx5 LINE L1 -578 6472 6170 2 929 2131 213 21 2 chr6 45177574 45177992 -104339045 + Lx5 LINE L1 6620 7045 -5 2 929 398 36 0 18 chr6 45178281 45178338 -104338699 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 2 929 523 286 78 24 chr6 45178338 45178518 -104338519 + B3A SINE B2 15 207 -9 2 929 914 158 34 69 chr6 45178532 45178736 -104338301 - Lx3C LINE L1 -2 6974 6778 2 929 449 286 47 56 chr6 45180744 45180959 -104336078 + B3 SINE B2 1 213 -3 2 929 426 317 92 14 chr6 45181110 45181251 -104335786 + B4 SINE B4 119 270 -22 2 929 348 88 0 0 chr6 45181251 45181308 -104335729 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 929 911 140 0 6 chr6 45182299 45182457 -104334580 + (TTTC)n Simple_repeat Simple_repeat 3 159 0 2 929 726 267 8 55 chr6 45183729 45183783 -104333254 - MurERV4-int LTR ERVK -5033 227 185 2 929 370 36 0 35 chr6 45183783 45183841 -104333196 + (CAA)n Simple_repeat Simple_repeat 2 57 0 2 929 726 267 8 55 chr6 45183841 45184024 -104333013 - MurERV4-int LTR ERVK -5076 184 1 2 929 303 231 151 19 chr6 45184024 45184130 -104332907 - RMER4A LTR ERVK 0 466 347 2 929 192 77 0 0 chr6 45184138 45184164 -104332873 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 2 929 1845 196 90 2 chr6 45184213 45184637 -104332400 - RMER4A LTR ERVK -4 462 2 2 929 4775 55 2 0 chr6 45185245 45185832 -104331205 + L1_Mus1 LINE L1 5979 6566 -1 2 929 206 121 0 0 chr6 45186008 45186041 -104330996 + (A)n Simple_repeat Simple_repeat 1 33 0 2 929 1270 55 0 0 chr6 45186468 45186631 -104330406 - L1Md_T LINE L1 0 6582 6420 2 929 588 322 22 11 chr6 45187717 45187896 -104329141 - B3A SINE B2 0 198 18 2 929 1070 302 22 27 chr6 45187929 45188337 -104328700 - Lx6 LINE L1 -27 7433 7028 2 929 301 289 62 0 chr6 45189213 45189341 -104327696 + L1MD3 LINE L1 7814 7949 -46 2 929 295 191 0 37 chr6 45189365 45189474 -104327563 - Lx7 LINE L1 -148 7548 7444 2 929 650 185 14 22 chr6 45189767 45189905 -104327132 - RMER19B LTR ERVK 0 902 766 2 929 7151 110 16 9 chr6 45189912 45190234 -104326803 - Lx LINE L1 0 6654 6327 2 929 299 25 25 0 chr6 45190234 45190274 -104326763 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 2 929 7151 114 15 9 chr6 45190274 45191085 -104325952 - Lx LINE L1 -328 6326 5514 2 929 3131 204 68 83 chr6 45191085 45191859 -104325178 - RMER19B LTR ERVK -139 763 1 2 929 569 92 55 0 chr6 45192527 45192636 -104324401 + (TTTTC)n Simple_repeat Simple_repeat 1 115 0 2 929 238 365 12 12 chr6 45194164 45194250 -104322787 - B4A SINE B4 -18 274 189 2 929 450 36 0 0 chr6 45194608 45194664 -104322373 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 929 355 280 71 56 chr6 45196741 45196938 -104320099 - L1M2 LINE L1 -487 5804 5605 2 929 211 188 0 20 chr6 45197038 45197087 -104319950 - B1F SINE Alu -2 147 100 2 929 1073 89 7 0 chr6 45197884 45198030 -104319007 + B1_Mus1 SINE Alu 2 148 0 2 929 22 0 0 0 chr6 45198537 45198559 -104318478 + AT_rich Low_complexity Low_complexity 1 22 0 2 929 273 227 91 0 chr6 45199885 45199973 -104317064 - MER53 DNA hAT -3 190 95 2 929 1417 38 43 0 chr6 45200367 45200551 -104316486 + L1Md_F2 LINE L1 6377 6568 -14 2 929 234 0 0 0 chr6 45200835 45200861 -104316176 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 929 1037 101 0 0 chr6 45200861 45200999 -104316038 - B1_Mus1 SINE Alu -10 138 1 2 929 374 303 122 16 chr6 45201704 45201892 -104315145 + B3 SINE B2 4 211 -5 2 929 3237 62 7 0 chr6 45202121 45202538 -104314499 - L1Md_F2 LINE L1 -1 6581 6162 2 929 612 180 24 32 chr6 45202559 45202685 -104314352 - B1_Mus1 SINE Alu -16 132 8 2 929 418 336 7 0 chr6 45202754 45202900 -104314137 - B1_Mur2 SINE Alu -1 148 2 2 929 21 71 0 0 chr6 45203030 45203072 -104313965 + AT_rich Low_complexity Low_complexity 1 42 0 2 929 14397 76 9 7 chr6 45203706 45204671 -104312366 - L1Md_F2 LINE L1 0 6582 5621 2 929 648 0 0 0 chr6 45204671 45204743 -104312294 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 929 14397 77 4 0 chr6 45204743 45206408 -104310629 - L1Md_F2 LINE L1 -263 5620 3948 2 929 2300 69 3 3 chr6 45206405 45206725 -104310312 - L1Md_F2 LINE L1 -2720 3163 2844 2 929 1218 177 5 0 chr6 45206724 45206944 -104310093 - L1Md_F LINE L1 -6004 515 295 2 929 398 53 18 0 chr6 45208605 45208662 -104308375 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 929 204 189 36 36 chr6 45209035 45209090 -104307947 + L3 LINE CR1 1112 1166 -3323 2 929 646 246 119 11 chr6 45209911 45210096 -104306941 + B3 SINE B2 12 216 0 2 929 1594 146 32 84 chr6 45210340 45210685 -104306352 - ORR1A4 LTR MaLR 0 329 3 2 929 1100 79 0 0 chr6 45211129 45211268 -104305769 - B1_Mus2 SINE Alu -8 139 1 2 929 21 0 0 0 chr6 45211900 45211921 -104305116 + AT_rich Low_complexity Low_complexity 1 21 0 2 929 1009 53 0 0 chr6 45211947 45212078 -104304959 + L1_Mus2 LINE L1 6436 6566 0 2 929 219 302 23 0 chr6 45212437 45212523 -104304514 + GA-rich Low_complexity Low_complexity 2 89 0 2 929 453 198 0 0 chr6 45212797 45212898 -104304139 + (CA)n Simple_repeat Simple_repeat 1 101 0 2 929 745 286 125 49 chr6 45213401 45213789 -104303248 - RMER13A LTR ERVK -422 486 30 2 929 315 65 0 0 chr6 45215106 45215152 -104301885 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 929 488 240 45 67 chr6 45215173 45215307 -104301730 - RSINE1 SINE B4 -34 131 1 2 929 465 316 0 25 chr6 45215317 45215437 -104301600 - ID_B1 SINE B4 -8 216 100 2 929 21 0 0 0 chr6 45216190 45216211 -104300826 + AT_rich Low_complexity Low_complexity 1 21 0 2 929 767 295 50 42 chr6 45216540 45216823 -104300214 - B4 SINE B4 0 292 8 2 929 498 61 0 0 chr6 45216956 45217022 -104300015 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 929 1364 29 18 0 chr6 45217380 45217551 -104299486 + (TTCTCC)n Simple_repeat Simple_repeat 2 175 0 2 929 406 120 0 26 chr6 45217551 45217628 -104299409 + (TCTCCC)n Simple_repeat Simple_repeat 2 76 0 2 929 360 0 0 0 chr6 45217628 45217668 -104299369 + (TTA)n Simple_repeat Simple_repeat 3 42 0 2 929 536 111 10 0 chr6 45217888 45217987 -104299050 + (TG)n Simple_repeat Simple_repeat 1 100 0 2 930 6088 140 31 4 chr6 45221684 45222735 -104294302 + Lx2A1 LINE L1 5914 6993 -15 2 930 257 0 0 29 chr6 45222735 45222769 -104294268 + (TAA)n Simple_repeat Simple_repeat 1 33 0 2 930 1601 213 74 3 chr6 45223210 45223563 -104293474 - ORR1B1 LTR MaLR -14 380 3 2 930 351 44 0 0 chr6 45223795 45223840 -104293197 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 930 190 375 0 0 chr6 45224195 45224259 -104292778 - MIRc SINE MIR -117 151 88 2 930 256 95 0 87 chr6 45224521 45224567 -104292470 - RLTR13D4 LTR ERVK -119 914 873 2 930 216 0 0 0 chr6 45224567 45224591 -104292446 + (T)n Simple_repeat Simple_repeat 1 24 0 2 930 1215 41 0 0 chr6 45224591 45224738 -104292299 - B1_Mm SINE Alu 0 147 1 2 930 3789 51 106 2 chr6 45224738 45225269 -104291768 - RLTR13D4 LTR ERVK -149 884 299 2 930 1688 98 0 0 chr6 45225260 45225496 -104291541 + RLTR13D5 LTR ERVK 71 306 -717 2 930 1478 121 0 9 chr6 45225871 45226096 -104290941 - Lx2 LINE L1 0 6997 6775 2 930 503 123 0 0 chr6 45226096 45226169 -104290868 - Lx2 LINE L1 -354 6643 6571 2 930 321 26 0 0 chr6 45226481 45226519 -104290518 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2 930 874 297 138 35 chr6 45226562 45227214 -104289823 - L1MA6 LINE L1 -185 6115 5397 2 930 255 157 98 0 chr6 45228635 45228813 -104288224 + (TAGA)n Simple_repeat Simple_repeat 1 195 0 2 930 25 0 0 0 chr6 45230163 45230188 -104286849 + AT_rich Low_complexity Low_complexity 1 25 0 2 930 1065 73 0 0 chr6 45230413 45230550 -104286487 + B1_Mus2 SINE Alu 2 138 -9 2 930 306 0 0 0 chr6 45230555 45230589 -104286448 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 930 25 51 0 0 chr6 45231915 45231954 -104285083 + AT_rich Low_complexity Low_complexity 1 39 0 3 930 255 79 0 0 chr6 45232420 45232458 -104284579 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 930 810 296 179 13 chr6 45232458 45232755 -104284282 - MTD LTR MaLR -27 392 47 3 930 29 28 0 0 chr6 45233141 45233177 -104283860 + AT_rich Low_complexity Low_complexity 1 36 0 3 930 328 322 17 11 chr6 45233435 45233611 -104283426 + (CATA)n Simple_repeat Simple_repeat 4 180 0 3 930 284 248 38 0 chr6 45233625 45233782 -104283255 + (CATATA)n Simple_repeat Simple_repeat 6 168 0 3 930 23 0 0 0 chr6 45234213 45234236 -104282801 + AT_rich Low_complexity Low_complexity 1 23 0 3 930 220 313 0 29 chr6 45234288 45234390 -104282647 + (CATA)n Simple_repeat Simple_repeat 1 99 0 3 930 225 0 0 0 chr6 45235139 45235164 -104281873 + (T)n Simple_repeat Simple_repeat 1 25 0 3 930 28 0 0 0 chr6 45235871 45235899 -104281138 + AT_rich Low_complexity Low_complexity 1 28 0 3 930 317 274 17 34 chr6 45235976 45236093 -104280944 + B3 SINE B2 97 211 -5 3 930 513 32 0 0 chr6 45236652 45236715 -104280322 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 930 409 262 8 38 chr6 45237035 45237166 -104279871 + B3 SINE B2 84 210 -6 3 930 221 182 0 18 chr6 45238857 45238913 -104278124 + (ATG)n Simple_repeat Simple_repeat 2 56 0 3 930 512 305 22 106 chr6 45240104 45240381 -104276656 - MTEa LTR MaLR -83 296 35 3 930 239 309 16 31 chr6 45241750 45241877 -104275160 - L1M5 LINE L1 -564 5615 5491 3 930 374 0 0 21 chr6 45242908 45242955 -104274082 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 930 23 54 0 0 chr6 45243931 45243968 -104273069 + AT_rich Low_complexity Low_complexity 1 37 0 3 930 594 289 40 33 chr6 45244242 45244517 -104272520 - L1MA6 LINE L1 -343 5957 5681 3 930 286 311 132 36 chr6 45244520 45244824 -104272213 + L1MA6 LINE L1 5961 6293 -7 3 930 243 0 0 0 chr6 45245944 45245971 -104271066 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 930 865 138 7 28 chr6 45245971 45246113 -104270924 - B1_Mus2 SINE Alu -8 139 1 3 930 366 281 118 87 chr6 45246113 45246166 -104270871 - B4 SINE B4 -74 218 18 3 930 205 299 0 0 chr6 45246193 45246260 -104270777 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 3 930 346 204 20 0 chr6 45246263 45246361 -104270676 + CT-rich Low_complexity Low_complexity 1 100 0 3 930 29 47 0 0 chr6 45247119 45247162 -104269875 + AT_rich Low_complexity Low_complexity 1 43 0 3 930 1037 85 7 0 chr6 45247234 45247375 -104269662 + B1_Mus1 SINE Alu 1 142 -6 3 930 2019 132 16 3 chr6 45248232 45248552 -104268485 - L1_Mus3 LINE L1 -26 6612 6289 3 930 2431 113 28 0 chr6 45248548 45248910 -104268127 + L1_Mus3 LINE L1 5907 6278 -358 3 930 305 350 86 49 chr6 45249209 45249557 -104267480 - HAL1 LINE L1 -772 1735 1375 3 930 437 286 32 48 chr6 45249824 45250011 -104267026 + B3A SINE B2 2 185 -13 3 930 53 0 0 0 chr6 45250011 45250064 -104266973 + AT_rich Low_complexity Low_complexity 1 53 0 3 930 2641 278 90 24 chr6 45250346 45251120 -104265917 + RMER1A Other Other 82 898 -132 3 930 2749 95 46 3 chr6 45251120 45251510 -104265527 + MTB_Mm LTR MaLR 1 407 0 3 930 2641 278 90 24 chr6 45251510 45251622 -104265415 + RMER1A Other Other 899 1026 -4 3 930 308 148 16 0 chr6 45252478 45252539 -104264498 + GA-rich Low_complexity Low_complexity 3 64 0 3 930 23 33 0 0 chr6 45252904 45252934 -104264103 + AT_rich Low_complexity Low_complexity 1 30 0 3 930 2632 76 0 6 chr6 45253107 45253452 -104263585 - ORR1A1 LTR MaLR 0 346 4 3 930 654 49 0 0 chr6 45253453 45253535 -104263502 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 930 261 0 0 0 chr6 45255602 45255631 -104261406 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 930 258 32 0 0 chr6 45255832 45255863 -104261174 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 930 1157 130 17 0 chr6 45256358 45256535 -104260502 + B2_Mm2 SINE B2 1 180 -15 3 930 271 44 44 0 chr6 45257279 45257324 -104259713 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 3 930 276 242 32 0 chr6 45257337 45257399 -104259638 - MTEa LTR MaLR -3 376 313 3 930 645 14 0 0 chr6 45257498 45257572 -104259465 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 930 5419 84 30 13 chr6 45257763 45258555 -104258482 - RLTR13C2 LTR ERVK 0 978 2 3 930 477 0 0 0 chr6 45258555 45258608 -104258429 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 3 930 21 0 0 0 chr6 45259021 45259042 -104257995 + AT_rich Low_complexity Low_complexity 1 21 0 3 930 1100 258 101 19 chr6 45259684 45260059 -104256978 + MTD LTR MaLR 14 419 0 3 930 620 289 31 18 chr6 45260060 45260282 -104256755 + MTD-int LTR MaLR 2 226 -1032 3 930 21697 71 5 3 chr6 45260325 45263802 -104253235 - L1Md_F2 LINE L1 -114 6468 2985 3 930 474 18 0 0 chr6 45264106 45264161 -104252876 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 930 421 317 105 64 chr6 45264191 45264457 -104252580 - B4 SINE B4 -11 281 5 3 930 1308 323 103 18 chr6 45264833 45265602 -104251435 - Lx8 LINE L1 -2 7471 6638 3 930 3152 56 5 5 chr6 45265826 45266224 -104250813 - MTB LTR MaLR 0 400 3 3 930 208 161 0 51 chr6 45266438 45266497 -104250540 + T-rich Low_complexity Low_complexity 2 57 0 3 930 234 0 0 0 chr6 45267803 45267829 -104249208 + (T)n Simple_repeat Simple_repeat 1 26 0 3 930 380 250 144 0 chr6 45268469 45268573 -104248464 + B3 SINE B2 97 215 -1 3 930 274 279 103 68 chr6 45269077 45269223 -104247814 + B4A SINE B4 133 283 -9 3 930 307 95 0 0 chr6 45269231 45269273 -104247764 + HAL1-3A_ME LINE L1 1971 2012 -846 3 930 224 320 0 0 chr6 45269278 45269353 -104247684 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 930 21 89 0 0 chr6 45269948 45270004 -104247033 + AT_rich Low_complexity Low_complexity 1 56 0 3 930 438 20 0 0 chr6 45270033 45270084 -104246953 + (TAAAA)n Simple_repeat Simple_repeat 5 55 0 3 930 468 126 10 103 chr6 45270117 45270214 -104246823 + B1_Mus2 SINE Alu 60 147 0 3 930 700 321 75 47 chr6 45271232 45271632 -104245405 + MTE2a LTR MaLR 1 405 -14 3 930 183 42 0 0 chr6 45271784 45271808 -104245229 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 930 1049 75 14 0 chr6 45271821 45271967 -104245070 - B1_Mus1 SINE Alu 0 148 1 3 930 22 0 0 0 chr6 45272335 45272357 -104244680 + AT_rich Low_complexity Low_complexity 1 22 0 3 930 401 305 79 20 chr6 45272538 45272788 -104244249 - L1MA7 LINE L1 -142 6047 5782 3 930 1127 292 70 20 chr6 45273004 45273346 -104243691 - MTEa LTR MaLR -20 359 1 3 930 322 282 21 14 chr6 45273368 45273512 -104243525 + L1MA8 LINE L1 6130 6274 -17 3 930 180 0 0 0 chr6 45273785 45273805 -104243232 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 3 930 869 262 0 30 chr6 45274288 45274520 -104242517 - URR1B DNA MER1_type 0 225 1 3 930 244 65 21 42 chr6 45275073 45275121 -104241916 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3 930 3561 88 0 8 chr6 45275547 45276040 -104240997 - L1Md_F2 LINE L1 0 6582 6094 3 930 27 29 0 0 chr6 45276988 45277022 -104240015 + AT_rich Low_complexity Low_complexity 1 34 0 3 930 824 141 13 13 chr6 45277218 45277376 -104239661 - L1_Mus3 LINE L1 -11 6627 6470 3 930 386 105 18 0 chr6 45277376 45277433 -104239604 + L1_Mus2 LINE L1 5610 5667 -899 3 930 31 68 0 0 chr6 45277754 45277813 -104239224 + AT_rich Low_complexity Low_complexity 1 59 0 3 930 858 116 39 6 chr6 45279154 45279310 -104237727 + Lx LINE L1 6486 6646 -8 3 930 403 280 173 33 chr6 45279449 45279663 -104237374 + MLT1B LTR MaLR 9 252 -138 3 930 7931 43 19 0 chr6 45281769 45282804 -104234233 - L1Md_F3 LINE L1 -2 6582 5529 3 930 4089 87 0 0 chr6 45282804 45283346 -104233691 + L1_Mus1 LINE L1 6018 6559 -8 3 930 522 114 0 0 chr6 45283346 45283425 -104233612 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 3 930 184 30 61 0 chr6 45286056 45286089 -104230948 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 930 183 80 0 0 chr6 45287443 45287468 -104229569 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 3 930 243 140 0 0 chr6 45287488 45287538 -104229499 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 930 657 186 0 0 chr6 45288147 45288276 -104228761 + (TA)n Simple_repeat Simple_repeat 1 129 0 3 930 726 303 0 46 chr6 45289078 45289251 -104227786 + B3 SINE B2 9 171 -45 3 930 411 38 0 0 chr6 45289251 45289304 -104227733 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 930 726 303 0 46 chr6 45289304 45289348 -104227689 + B3 SINE B2 172 215 -1 3 930 693 220 0 14 chr6 45289409 45289552 -104227485 - B1_Mus1 SINE Alu -2 146 6 3 930 22 56 0 0 chr6 45290591 45290627 -104226410 + AT_rich Low_complexity Low_complexity 1 36 0 3 930 985 166 11 16 chr6 45291045 45291235 -104225802 - B2_Mm1t SINE B2 -2 191 3 3 930 537 16 0 0 chr6 45291474 45291536 -104225501 + (TC)n Simple_repeat Simple_repeat 2 63 0 3 930 835 43 17 0 chr6 45291536 45291651 -104225386 + (TG)n Simple_repeat Simple_repeat 1 118 0 3 930 211 346 0 0 chr6 45291678 45291730 -104225307 - ID4 SINE ID -28 55 4 3 930 487 238 37 0 chr6 45291934 45292098 -104224939 + Lx9 LINE L1 7475 7644 0 3 930 26 50 0 0 chr6 45293556 45293596 -104223441 + AT_rich Low_complexity Low_complexity 1 40 0 3 930 1194 98 0 0 chr6 45294149 45294313 -104222724 - Lx LINE L1 -475 6179 6016 3 930 453 155 0 0 chr6 45294311 45294382 -104222655 + Lx LINE L1 6211 6281 -373 3 930 1988 202 31 17 chr6 45294641 45295054 -104221983 + MTC LTR MaLR 1 419 -2 3 930 925 80 13 7 chr6 45296177 45296328 -104220709 + L1_Mus3 LINE L1 6485 6636 -2 3 930 339 384 16 0 chr6 45296576 45296701 -104220336 - ID_B1 SINE B4 -95 129 3 3 930 558 124 0 0 chr6 45296982 45297071 -104219966 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 930 23 0 0 0 chr6 45297186 45297209 -104219828 + AT_rich Low_complexity Low_complexity 1 23 0 3 930 529 340 110 11 chr6 45297307 45297553 -104219484 - B4A SINE B4 -20 272 1 4 930 396 0 0 0 chr6 45297579 45297623 -104219414 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 4 930 388 294 79 66 chr6 45298425 45298742 -104218295 - L1MEg LINE L1 -5005 1195 829 4 930 189 0 0 0 chr6 45299515 45299536 -104217501 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 4 930 275 271 80 58 chr6 45299847 45299960 -104217077 + MLT2C2 LTR ERVL 451 596 -5 4 930 364 394 42 6 chr6 45300381 45300547 -104216490 + MER45A DNA Tip100 7 178 0 4 930 24 32 0 0 chr6 45300870 45300901 -104216136 + AT_rich Low_complexity Low_complexity 1 31 0 4 930 436 329 27 7 chr6 45301003 45301150 -104215887 - RSINE1 SINE B4 -12 153 4 4 930 253 275 121 0 chr6 45301503 45301594 -104215443 + L1MA10 LINE L1 6207 6308 -26 4 930 42 71 0 0 chr6 45302206 45302290 -104214747 + AT_rich Low_complexity Low_complexity 1 84 0 4 930 271 336 41 7 chr6 45302643 45302790 -104214247 - Lx8 LINE L1 -359 7114 6963 4 930 234 0 0 0 chr6 45302918 45302944 -104214093 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 4 930 306 352 37 0 chr6 45302967 45303075 -104213962 - RSINE1 SINE B4 -17 148 37 4 930 29 28 0 0 chr6 45303943 45303979 -104213058 + AT_rich Low_complexity Low_complexity 1 36 0 4 930 23 0 0 0 chr6 45304818 45304841 -104212196 + AT_rich Low_complexity Low_complexity 1 23 0 4 930 285 316 51 0 chr6 45305338 45305417 -104211620 - RSINE1 SINE B4 -17 148 66 4 930 21 0 0 0 chr6 45305452 45305473 -104211564 + AT_rich Low_complexity Low_complexity 1 21 0 4 930 215 200 0 24 chr6 45305580 45305621 -104211416 + ID4 SINE ID 3 42 -41 4 930 398 268 102 0 chr6 45305681 45305808 -104211229 + MER2 DNA MER2_type 114 253 -92 4 930 210 196 22 0 chr6 45306211 45306257 -104210780 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 4 930 902 332 50 9 chr6 45306289 45306730 -104210307 + L1MA7 LINE L1 5733 6191 -100 4 930 342 0 0 0 chr6 45306757 45306795 -104210242 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 930 22 0 0 0 chr6 45307411 45307433 -104209604 + AT_rich Low_complexity Low_complexity 1 22 0 4 930 390 293 187 0 chr6 45307448 45307571 -104209466 - RSINE1 SINE B4 -17 148 3 4 930 2168 127 30 0 chr6 45307632 45307994 -104209043 + L1_Mus3 LINE L1 6263 6635 -3 4 930 270 338 60 57 chr6 45308896 45309144 -104207893 + MTEb LTR MaLR 9 257 -102 4 930 287 333 10 20 chr6 45309502 45309603 -104207434 + MTEb LTR MaLR 262 361 -18 4 930 318 232 0 14 chr6 45309767 45309837 -104207200 + HAL1-3A_ME LINE L1 1978 2046 -812 4 930 259 234 16 0 chr6 45309839 45309903 -104207134 + GA-rich Low_complexity Low_complexity 2 66 0 4 930 22 56 0 0 chr6 45310004 45310040 -104206997 + AT_rich Low_complexity Low_complexity 1 36 0 4 930 352 172 11 11 chr6 45310047 45310135 -104206902 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 4 930 291 54 0 0 chr6 45310558 45310595 -104206442 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 930 459 0 0 0 chr6 45310595 45310645 -104206392 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 930 900 0 0 0 chr6 45312372 45312472 -104204565 + (TTC)n Simple_repeat Simple_repeat 1 100 0 4 930 371 305 57 9 chr6 45312529 45312635 -104204402 + RSINE1 SINE B4 11 121 -44 4 930 486 0 0 0 chr6 45312652 45312706 -104204331 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 930 2049 220 47 7 chr6 45313319 45313882 -104203155 + Lx2B LINE L1 6360 7041 -17 4 930 25 51 0 0 chr6 45313883 45313922 -104203115 + AT_rich Low_complexity Low_complexity 1 39 0 4 930 384 22 0 0 chr6 45314211 45314256 -104202781 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 930 807 267 6 6 chr6 45314405 45314582 -104202455 + B3 SINE B2 39 215 -1 4 930 212 188 21 0 chr6 45315678 45315726 -104201311 + T-rich Low_complexity Low_complexity 4 52 0 4 930 771 11 0 0 chr6 45315818 45315906 -104201131 + (GGAA)n Simple_repeat Simple_repeat 3 90 0 4 930 649 306 12 8 chr6 45316135 45316342 -104200695 + B3A SINE B2 6 211 -5 4 930 948 110 0 3 chr6 45317116 45317272 -104199765 - Lx LINE L1 -635 6001 5849 4 930 4018 119 39 22 chr6 45317273 45317941 -104199096 + Lx LINE L1 5976 6654 0 4 930 237 159 0 0 chr6 45318306 45318350 -104198687 + (CATA)n Simple_repeat Simple_repeat 1 44 0 4 930 697 206 13 52 chr6 45319034 45319188 -104197849 + B1_Mur4 SINE Alu 1 148 -2 4 930 27 73 0 0 chr6 45320103 45320158 -104196879 + AT_rich Low_complexity Low_complexity 1 55 0 4 930 3384 146 12 5 chr6 45320166 45320732 -104196305 - Lx3A LINE L1 -4 6977 6408 4 930 215 268 23 11 chr6 45321626 45321638 -104195399 + (TA)n Simple_repeat Simple_repeat 2 13 0 4 930 3558 68 6 2 chr6 45321638 45322111 -104194926 + L1Md_F2 LINE L1 6107 6581 -1 4 930 215 268 23 11 chr6 45322111 45322185 -104194852 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 930 611 347 64 24 chr6 45324092 45324390 -104192647 - MTEa LTR MaLR -9 370 61 4 930 26 36 0 51 chr6 45324656 45324715 -104192322 + AT_rich Low_complexity Low_complexity 1 56 0 4 930 22 70 0 0 chr6 45324929 45324972 -104192065 + AT_rich Low_complexity Low_complexity 1 43 0 4 930 24 32 0 0 chr6 45326755 45326786 -104190251 + AT_rich Low_complexity Low_complexity 1 31 0 4 930 21 36 0 0 chr6 45326926 45326954 -104190083 + AT_rich Low_complexity Low_complexity 1 28 0 4 930 258 81 0 0 chr6 45327885 45327922 -104189115 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 930 444 37 0 0 chr6 45328031 45328085 -104188952 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 930 286 347 85 30 chr6 45328158 45328357 -104188680 + MER2 DNA MER2_type 87 296 -49 4 930 423 0 0 0 chr6 45330485 45330532 -104186505 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 930 590 325 133 12 chr6 45330553 45330808 -104186229 - B4A SINE B4 -4 288 3 4 930 449 314 116 21 chr6 45331884 45332073 -104184964 - MTEb LTR MaLR -2 377 171 4 930 986 260 154 12 chr6 45333049 45333380 -104183657 + MTC LTR MaLR 1 378 -43 4 930 213 39 0 0 chr6 45334183 45334209 -104182828 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 4 930 216 294 16 16 chr6 45334282 45334403 -104182634 + GA-rich Low_complexity Low_complexity 1 121 0 4 930 692 138 18 23 chr6 45335904 45336075 -104180962 + (TA)n Simple_repeat Simple_repeat 1 170 0 4 930 589 309 80 40 chr6 45336737 45337087 -104179950 - Lx8 LINE L1 -28 7445 7082 4 930 1491 230 58 0 chr6 45337129 45337442 -104179595 - ORR1B1 LTR MaLR -62 332 2 4 930 477 359 28 0 chr6 45337579 45337724 -104179313 - RSINE1 SINE B4 -16 149 1 4 930 1802 294 2 55 chr6 45338218 45338761 -104178276 + RMER1C Other Other 553 1066 -276 4 930 985 261 115 36 chr6 45338842 45339337 -104177700 - RMER17A2 LTR ERVK -42 866 1 4 930 1229 224 56 8 chr6 45339337 45339566 -104177471 + MTD LTR MaLR 178 419 0 4 930 1137 86 0 0 chr6 45339960 45340112 -104176925 - L1_Mus1 LINE L1 -1 6566 6415 4 930 230 229 14 41 chr6 45340559 45340632 -104176405 - L1MB8 LINE L1 -89 6949 6879 4 930 533 255 68 48 chr6 45340838 45341089 -104175948 - L1MB8 LINE L1 -377 6661 6406 4 930 2236 256 89 12 chr6 45341831 45341938 -104175099 - Lx9 LINE L1 -8 7636 7500 4 930 216 0 0 0 chr6 45341938 45341962 -104175075 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 930 2236 256 89 12 chr6 45341962 45342597 -104174440 - Lx9 LINE L1 -145 7499 6838 4 930 476 293 43 28 chr6 45342740 45342971 -104174066 - L1MA7 LINE L1 -245 6055 5823 4 930 410 303 67 39 chr6 45342984 45343238 -104173799 - L1MA7 LINE L1 -593 5707 5447 4 930 183 42 0 0 chr6 45343657 45343681 -104173356 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 930 521 248 25 14 chr6 45343815 45343997 -104173040 - L1MB8 LINE L1 -694 6344 6164 4 930 282 56 0 0 chr6 45344788 45344824 -104172213 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 930 291 54 0 0 chr6 45344946 45344983 -104172054 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 930 558 0 0 0 chr6 45344983 45345044 -104171993 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 930 266 264 57 0 chr6 45345231 45345337 -104171700 - L1MB8 LINE L1 -5359 1975 1864 4 930 493 314 60 28 chr6 45345642 45345924 -104171113 - L1MB8 LINE L1 -6219 685 395 4 930 1484 327 21 19 chr6 45346082 45346662 -104170375 - Lx8 LINE L1 -464 7009 6429 4 930 27 0 0 0 chr6 45347432 45347459 -104169578 + AT_rich Low_complexity Low_complexity 1 27 0 4 930 414 0 0 0 chr6 45347935 45347981 -104169056 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 930 22 0 0 0 chr6 45349276 45349298 -104167739 + AT_rich Low_complexity Low_complexity 1 22 0 4 930 194 62 31 0 chr6 45349462 45349494 -104167543 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 930 23 0 0 0 chr6 45349577 45349600 -104167437 + AT_rich Low_complexity Low_complexity 1 23 0 4 931 679 341 89 39 chr6 45351291 45351850 -104165187 + Lx8 LINE L1 6860 7446 -27 4 931 630 332 28 35 chr6 45351972 45352256 -104164781 - Lx8 LINE L1 -98 7375 7094 4 931 24 32 0 0 chr6 45353465 45353496 -104163541 + AT_rich Low_complexity Low_complexity 1 31 0 4 931 240 324 123 82 chr6 45353496 45353765 -104163272 + B4A SINE B4 3 282 -10 4 931 690 82 0 0 chr6 45353789 45353887 -104163150 + (CA)n Simple_repeat Simple_repeat 1 98 0 4 931 350 21 0 21 chr6 45354225 45354273 -104162764 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 4 931 998 109 0 0 chr6 45354273 45354410 -104162627 - B1_Mus1 SINE Alu -11 137 1 4 931 181 364 39 0 chr6 45354712 45354789 -104162248 - L3 LINE CR1 -1084 3405 3326 4 931 352 337 89 15 chr6 45355351 45355610 -104161427 + Lx8 LINE L1 7189 7466 -7 4 931 622 289 46 15 chr6 45356246 45356443 -104160594 + B3 SINE B2 1 203 -13 4 931 540 100 0 0 chr6 45356611 45356691 -104160346 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 4 931 1755 207 6 3 chr6 45357891 45358225 -104158812 - L1_Mur1 LINE L1 -130 5756 5422 4 931 1546 192 0 0 chr6 45358224 45358511 -104158526 - L1_Mur1 LINE L1 -669 5208 4922 4 931 2068 163 33 0 chr6 45358506 45358867 -104158170 + Lx2B LINE L1 5701 6073 -927 4 931 2055 180 5 18 chr6 45358867 45359252 -104157785 + Lx2B LINE L1 6617 6996 -4 4 931 416 318 45 6 chr6 45359945 45360121 -104156916 - B3A SINE B2 -9 207 18 4 931 345 229 72 54 chr6 45360133 45360244 -104156793 - Lx2B LINE L1 -2 6998 6886 5 931 342 0 0 0 chr6 45360643 45360681 -104156356 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 5 931 486 0 0 0 chr6 45361050 45361104 -104155933 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 931 477 34 0 0 chr6 45361104 45361162 -104155875 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 931 5221 65 1 1 chr6 45361651 45362327 -104154710 - L1Md_F2 LINE L1 -1 6581 5906 5 931 868 274 182 57 chr6 45362525 45362997 -104154040 - MT2A LTR ERVL -2 531 1 5 931 213 132 0 0 chr6 45363457 45363495 -104153542 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 5 931 345 183 128 11 chr6 45363683 45363777 -104153260 - Arthur1B DNA Tip100 -274 951 847 5 931 301 389 53 86 chr6 45363952 45364427 -104152610 - Arthur1B DNA Tip100 -671 554 96 5 931 1211 42 0 29 chr6 45365205 45365375 -104151662 + L1Md_F3 LINE L1 6405 6569 -15 5 931 470 336 70 93 chr6 45366469 45366781 -104150256 + RLTR18 LTR ERVK 1 305 -311 5 931 262 350 110 49 chr6 45366918 45366994 -104150043 + RLTR18B LTR ERVK 243 329 -183 5 931 243 0 0 0 chr6 45366994 45367021 -104150016 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 931 262 350 110 49 chr6 45367021 45367045 -104149992 + RLTR18B LTR ERVK 330 358 -154 5 931 366 23 0 0 chr6 45367045 45367088 -104149949 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 931 262 350 110 49 chr6 45367088 45367232 -104149805 + RLTR18B LTR ERVK 359 503 -9 5 931 41072 6 0 0 chr6 45369074 45375481 -104141556 - L1Md_A LINE L1 0 6582 173 5 931 8380 70 0 0 chr6 45375631 45376723 -104140314 - L1_Mm LINE L1 -394 5489 4398 5 931 3247 34 0 0 chr6 45376723 45377105 -104139932 + L1Md_F2 LINE L1 5598 5979 -603 5 931 26 0 0 0 chr6 45377410 45377436 -104139601 + AT_rich Low_complexity Low_complexity 1 26 0 5 931 4655 59 0 12 chr6 45377472 45378070 -104138967 + L1Md_F2 LINE L1 5992 6582 0 5 931 331 296 111 0 chr6 45378610 45378718 -104138319 + B3 SINE B2 12 131 -85 5 931 345 47 0 0 chr6 45378768 45378811 -104138226 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 931 26 0 0 0 chr6 45378844 45378870 -104138167 + AT_rich Low_complexity Low_complexity 1 26 0 5 931 203 147 0 0 chr6 45379901 45379935 -104137102 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 931 648 328 10 24 chr6 45380985 45381279 -104135758 - B4 SINE B4 0 292 3 5 931 408 20 0 0 chr6 45381589 45381638 -104135399 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 931 916 349 24 13 chr6 45382644 45383019 -104134018 + MTEa LTR MaLR 1 379 0 5 931 471 286 101 30 chr6 45383510 45383806 -104133231 + L1MA8 LINE L1 5952 6268 -23 5 931 1285 118 28 28 chr6 45383936 45384154 -104132883 - Lx3_Mus LINE L1 0 7009 6792 5 931 1701 87 0 0 chr6 45384154 45384385 -104132652 + Lx3_Mus LINE L1 6559 6789 -220 5 931 252 303 61 0 chr6 45384766 45384832 -104132205 + PB1D7 SINE Alu 49 118 -2 5 931 297 101 0 12 chr6 45384999 45385059 -104131978 - B1_Mur4 SINE Alu -1 149 59 5 931 648 315 60 0 chr6 45385234 45385418 -104131619 - B3 SINE B2 -14 202 8 5 931 189 0 0 0 chr6 45385780 45385801 -104131236 + (TAA)n Simple_repeat Simple_repeat 2 22 0 5 931 210 269 65 131 chr6 45386003 45386110 -104130927 - PB1D10 SINE Alu -8 109 10 5 931 4140 31 2 0 chr6 45386361 45386847 -104130190 + L1Md_T LINE L1 6096 6582 0 5 931 492 99 0 0 chr6 45386849 45386920 -104130117 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 5 931 3045 43 5 0 chr6 45387230 45387605 -104129432 - L1_Mus1 LINE L1 -3 6564 6188 5 931 412 283 60 22 chr6 45387606 45387790 -104129247 - L1M3 LINE L1 -431 5737 5547 5 931 26 0 0 0 chr6 45388253 45388279 -104128758 + AT_rich Low_complexity Low_complexity 1 26 0 5 931 24 53 0 0 chr6 45388356 45388394 -104128643 + AT_rich Low_complexity Low_complexity 1 38 0 5 931 2540 150 24 13 chr6 45388402 45388862 -104128175 - Lx3B LINE L1 0 6973 6509 5 931 26 0 0 0 chr6 45389299 45389325 -104127712 + AT_rich Low_complexity Low_complexity 1 26 0 5 931 372 43 0 0 chr6 45389348 45389394 -104127643 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 931 21 71 0 0 chr6 45389405 45389447 -104127590 + AT_rich Low_complexity Low_complexity 1 42 0 5 931 39 22 0 0 chr6 45389673 45389719 -104127318 + AT_rich Low_complexity Low_complexity 1 46 0 5 931 3202 224 76 30 chr6 45389722 45390317 -104126720 - Lx2B LINE L1 -1 6999 6369 5 931 246 32 0 0 chr6 45390317 45390348 -104126689 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 931 3202 224 76 30 chr6 45390348 45390594 -104126443 - Lx2B LINE L1 -632 6368 6119 5 931 1819 76 0 74 chr6 45390793 45391077 -104125960 - L1Md_F2 LINE L1 0 6582 6320 5 931 192 97 0 0 chr6 45391430 45391461 -104125576 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 931 1082 153 0 0 chr6 45391550 45391726 -104125311 - RMER17B LTR ERVK 0 958 783 5 931 200 272 82 67 chr6 45393044 45393178 -104123859 - MIRc SINE MIR -25 243 108 5 931 237 338 69 32 chr6 45393212 45393429 -104123608 + Lx8 LINE L1 7148 7499 -145 5 931 1733 163 6 21 chr6 45393446 45393669 -104123368 - L1_Mur2 LINE L1 -2074 3803 3584 5 931 2540 86 23 0 chr6 45393669 45394018 -104123019 - IAPEY2_LTR LTR ERVK 0 357 1 5 931 1733 163 6 21 chr6 45394018 45394132 -104122905 - L1_Mur2 LINE L1 -2294 3583 3471 5 931 218 56 28 0 chr6 45394132 45394168 -104122869 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 5 931 1197 84 0 0 chr6 45394696 45394935 -104122102 + (TG)n Simple_repeat Simple_repeat 1 239 0 5 931 1272 67 0 0 chr6 45394947 45395127 -104121910 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 931 535 355 37 64 chr6 45395158 45395456 -104121581 - B4 SINE B4 -1 291 2 5 931 282 338 94 19 chr6 45396081 45396241 -104120796 + MIRb SINE MIR 21 192 -76 5 931 22 0 0 0 chr6 45396787 45396809 -104120228 + AT_rich Low_complexity Low_complexity 1 22 0 5 931 1790 69 0 0 chr6 45397169 45397400 -104119637 - L1Md_F3 LINE L1 -3 6581 6351 5 931 2263 30 0 0 chr6 45397400 45397667 -104119370 + L1Md_F3 LINE L1 6109 6375 -209 5 931 533 296 72 44 chr6 45397790 45397970 -104119067 + B3A SINE B2 7 191 -7 5 931 378 42 0 0 chr6 45398030 45398078 -104118959 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 931 450 0 0 0 chr6 45398078 45398127 -104118910 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 931 267 310 34 48 chr6 45399547 45399754 -104117283 - L1MA9 LINE L1 -251 6061 5858 5 931 229 353 0 14 chr6 45399980 45400049 -104116988 - ID4 SINE ID -14 69 2 5 931 366 123 0 0 chr6 45400197 45400254 -104116783 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 931 2640 160 78 19 chr6 45400814 45401298 -104115739 - Lx2B LINE L1 -18 6982 6470 5 931 1213 54 12 0 chr6 45401625 45401791 -104115246 + (TG)n Simple_repeat Simple_repeat 2 169 0 5 931 596 323 73 31 chr6 45401813 45402072 -104114965 - B4 SINE B4 -1 291 22 5 931 33 43 0 0 chr6 45402198 45402245 -104114792 + AT_rich Low_complexity Low_complexity 1 47 0 5 931 254 170 31 161 chr6 45402685 45402846 -104114191 + Lx9 LINE L1 7502 7641 -3 5 931 902 290 9 18 chr6 45403483 45403708 -104113329 - LTR89 LTR ERVL? -21 858 636 5 931 23 33 0 0 chr6 45403989 45404019 -104113018 + AT_rich Low_complexity Low_complexity 1 30 0 5 931 189 147 0 0 chr6 45404889 45404923 -104112114 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 931 24 0 0 0 chr6 45405260 45405284 -104111753 + AT_rich Low_complexity Low_complexity 1 24 0 5 931 21 0 0 0 chr6 45406185 45406206 -104110831 + AT_rich Low_complexity Low_complexity 1 21 0 5 931 277 352 38 0 chr6 45407151 45407256 -104109781 - RSINE1 SINE B4 -25 140 32 5 931 438 94 0 0 chr6 45407316 45407380 -104109657 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 931 381 22 0 0 chr6 45407725 45407771 -104109266 + (CTAGT)n Simple_repeat Simple_repeat 2 47 0 5 931 243 337 41 0 chr6 45407846 45407944 -104109093 + Lx7 LINE L1 6645 6746 -950 5 931 1762 103 35 141 chr6 45409593 45410005 -104107032 + Lx2 LINE L1 6282 6997 0 5 931 561 209 0 0 chr6 45410660 45410813 -104106224 + (TAG)n Simple_repeat Simple_repeat 3 155 0 5 931 189 0 0 0 chr6 45411519 45411540 -104105497 + (TAA)n Simple_repeat Simple_repeat 1 21 0 5 931 325 330 69 78 chr6 45412180 45412384 -104104653 - HAL1-3A_ME LINE L1 -414 2444 2243 5 931 1754 347 61 10 chr6 45412935 45413735 -104103302 - Lx8 LINE L1 -441 7032 6192 5 931 261 22 21 42 chr6 45413772 45413820 -104103217 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 931 401 285 65 32 chr6 45414230 45414415 -104102622 + Lx7 LINE L1 5633 5823 -1873 5 931 5346 178 53 37 chr6 45414703 45416330 -104100707 - Lx3C LINE L1 -162 6814 5188 5 931 1562 181 0 0 chr6 45416326 45416619 -104100418 + Lx3C LINE L1 4845 5137 -749 5 931 1168 62 0 0 chr6 45417632 45417777 -104099260 - B1_Mus2 SINE Alu -1 146 2 5 931 22 0 0 0 chr6 45417846 45417868 -104099169 + AT_rich Low_complexity Low_complexity 1 22 0 5 931 500 273 0 0 chr6 45419034 45419144 -104097893 - B1_Mur3 SINE Alu -2 147 38 5 931 5842 36 26 4 chr6 45419155 45419881 -104097156 - L1Md_F3 LINE L1 0 6584 5843 5 931 203 230 9 65 chr6 45420214 45420321 -104096716 + (TATAA)n Simple_repeat Simple_repeat 5 105 0 5 931 290 375 8 40 chr6 45420331 45420456 -104096581 + Helitron3Na_Mam RC Helitron 277 397 -89 5 931 209 279 18 9 chr6 45420703 45420815 -104096222 + (TA)n Simple_repeat Simple_repeat 2 114 0 5 931 195 139 0 0 chr6 45421684 45421720 -104095317 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 931 203 271 13 67 chr6 45422037 45422112 -104094925 + MIR SINE MIR 117 187 -75 5 931 247 143 24 0 chr6 45422152 45422194 -104094843 - MLT1L LTR MaLR -2 608 566 5 931 322 367 79 7 chr6 45422449 45422589 -104094448 + B3A SINE B2 40 189 -9 5 931 21 36 0 0 chr6 45422645 45422673 -104094364 + AT_rich Low_complexity Low_complexity 1 28 0 5 931 21 71 0 0 chr6 45423430 45423472 -104093565 + AT_rich Low_complexity Low_complexity 1 42 0 5 931 1187 193 0 80 chr6 45423723 45423987 -104093050 - ORR1C2 LTR MaLR -139 245 3 5 931 204 250 0 0 chr6 45424075 45424119 -104092918 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 5 931 22 0 0 0 chr6 45426217 45426239 -104090798 + AT_rich Low_complexity Low_complexity 1 22 0 6 931 202 345 133 10 chr6 45426372 45426568 -104090469 + L2b LINE L2 2742 2961 -458 6 931 5441 102 1 1 chr6 45426586 45427593 -104089444 - L1_Mus3 LINE L1 -317 6321 5315 6 931 2130 128 12 0 chr6 45427593 45427928 -104089109 + L1_Mus3 LINE L1 6300 6638 0 6 931 192 391 47 0 chr6 45428235 45428299 -104088738 + L2b LINE L2 3290 3356 -19 6 931 227 152 0 42 chr6 45428937 45428985 -104088052 + LTR86C LTR ERVL 504 549 -72 6 931 38258 45 0 3 chr6 45429684 45436372 -104080665 - L1Md_T LINE L1 0 6585 1 6 931 24 67 0 0 chr6 45436646 45436691 -104080346 + AT_rich Low_complexity Low_complexity 1 45 0 6 931 3514 64 2 9 chr6 45437342 45437852 -104079185 - L1_Mus1 LINE L1 -531 6035 5529 6 931 3927 56 4 2 chr6 45437853 45438351 -104078686 + L1_Mus1 LINE L1 6066 6564 -3 6 931 2636 89 23 8 chr6 45438724 45439121 -104077916 - L1_Mus3 LINE L1 -6 6632 6230 6 931 3141 75 0 5 chr6 45439121 45439534 -104077503 + L1_Mus3 LINE L1 5784 6194 -444 6 931 3828 89 2 39 chr6 45439600 45440140 -104076897 + L1_Mus2 LINE L1 6047 6566 0 6 931 207 0 0 0 chr6 45441912 45441935 -104075102 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 931 2978 74 8 5 chr6 45442453 45442846 -104074191 - MTA_Mm LTR MaLR 0 396 3 6 931 6067 143 96 19 chr6 45442848 45444014 -104073023 - MTA_Mm-int LTR MaLR 0 1258 3 6 931 639 342 40 5 chr6 45444035 45444258 -104072779 + MTE2b LTR MaLR 1 231 -148 6 931 342 284 135 16 chr6 45444273 45444466 -104072571 - RLTR21 LTR ERVK -16 1556 1341 6 931 4010 179 193 5 chr6 45444499 45445462 -104071575 - RMER12 LTR ERVK -178 1144 1 6 931 376 263 121 81 chr6 45445462 45445610 -104071427 + MTE2b LTR MaLR 226 379 0 6 931 734 279 9 9 chr6 45446410 45446620 -104070417 - B3 SINE B2 -3 213 4 6 931 1119 208 120 85 chr6 45449627 45449969 -104067068 - ORR1B1 LTR MaLR 0 394 41 6 931 306 277 19 38 chr6 45449984 45450089 -104066948 - MTE2b LTR MaLR -8 371 269 6 931 2378 221 25 10 chr6 45450173 45450653 -104066384 + RMER1A Other Other 415 901 -129 6 931 4732 78 11 0 chr6 45450666 45451297 -104065740 - L1_Mus3 LINE L1 -185 6453 5816 6 931 4076 134 5 6 chr6 45451301 45451930 -104065107 + L1_Mus3 LINE L1 5178 5805 -78 6 931 246 289 108 48 chr6 45452129 45452398 -104064639 - Charlie5 DNA MER1_type -13 2611 2327 6 931 322 341 88 23 chr6 45452699 45452870 -104064167 - B3 SINE B2 -34 182 1 6 931 640 0 25 0 chr6 45454682 45454762 -104062275 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 6 931 1043 250 72 36 chr6 45454924 45455231 -104061806 - MTE2b LTR MaLR -4 375 58 6 931 362 280 29 3 chr6 45455378 45455515 -104061522 - L1_Mur3 LINE L1 -1133 4747 4584 6 931 189 0 0 0 chr6 45455719 45455740 -104061297 + (CTTA)n Simple_repeat Simple_repeat 3 23 0 6 931 1185 83 0 0 chr6 45455941 45456121 -104060916 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 931 28 0 0 0 chr6 45457901 45457929 -104059108 + AT_rich Low_complexity Low_complexity 1 28 0 6 931 31 44 0 0 chr6 45458028 45458073 -104058964 + AT_rich Low_complexity Low_complexity 1 45 0 6 931 1086 109 0 0 chr6 45458094 45458241 -104058796 - B1_Mus2 SINE Alu 0 147 1 6 931 180 0 0 0 chr6 45458243 45458263 -104058774 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 931 280 301 18 9 chr6 45460558 45460672 -104056365 - L1MC3 LINE L1 -305 7480 7366 6 931 257 95 63 0 chr6 45460969 45461032 -104056005 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 931 542 367 82 62 chr6 45461032 45461215 -104055822 - L1MC3 LINE L1 -722 7063 6881 6 931 267 286 8 111 chr6 45461215 45461341 -104055696 - PB1D10 SINE Alu 0 117 5 6 931 542 367 82 62 chr6 45461341 45462150 -104054887 - L1MC3 LINE L1 -905 6880 6052 6 931 643 286 70 40 chr6 45462732 45463129 -104053908 - L1MC3 LINE L1 -2012 5773 5365 6 931 332 357 18 0 chr6 45463340 45463452 -104053585 + RSINE1 SINE B4 11 124 -41 6 931 456 104 0 0 chr6 45463452 45463519 -104053518 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 931 272 245 30 10 chr6 45463679 45463778 -104053259 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 6 931 227 400 0 28 chr6 45463992 45464100 -104052937 - ID_B1 SINE B4 -12 212 108 6 931 228 238 16 0 chr6 45464509 45464572 -104052465 - L1MC3 LINE L1 -1579 4567 4504 6 931 889 174 182 10 chr6 45465117 45465309 -104051728 + URR1B DNA MER1_type 1 225 0 6 931 22 35 0 0 chr6 45465433 45465462 -104051575 + AT_rich Low_complexity Low_complexity 1 29 0 6 931 33 0 0 0 chr6 45466128 45466161 -104050876 + AT_rich Low_complexity Low_complexity 1 33 0 6 931 27 29 0 0 chr6 45466232 45466266 -104050771 + AT_rich Low_complexity Low_complexity 1 34 0 6 931 8327 28 4 1 chr6 45466949 45467937 -104049100 - L1Md_F2 LINE L1 -5 6577 5587 6 931 369 0 0 0 chr6 45469765 45469806 -104047231 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 931 684 0 0 0 chr6 45470681 45470757 -104046280 + (TTTCC)n Simple_repeat Simple_repeat 3 78 0 6 931 23 0 0 0 chr6 45471191 45471214 -104045823 + AT_rich Low_complexity Low_complexity 1 23 0 6 931 1554 243 157 4 chr6 45472631 45473088 -104043949 - RLTR11A2 LTR ERVK 0 527 1 6 931 470 324 114 11 chr6 45473389 45473573 -104043464 - B4 SINE B4 -11 281 79 6 931 319 234 6 0 chr6 45473612 45473693 -104043344 - B4A SINE B4 -207 85 3 6 931 2623 73 0 0 chr6 45474431 45474772 -104042265 - L1_Mus1 LINE L1 -581 5986 5646 6 931 4185 73 0 9 chr6 45474773 45475431 -104041606 + L1_Mus1 LINE L1 6023 6567 0 6 931 516 16 0 0 chr6 45476261 45476322 -104040715 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 931 207 189 0 0 chr6 45476448 45476501 -104040536 + (TTG)n Simple_repeat Simple_repeat 2 54 0 6 931 294 95 0 0 chr6 45476507 45476549 -104040488 + (TCC)n Simple_repeat Simple_repeat 2 43 0 6 931 631 109 109 0 chr6 45476593 45476730 -104040307 - RMER17B LTR ERVK -495 463 312 6 931 581 164 0 33 chr6 45476832 45476952 -104040085 - L1Md_F2 LINE L1 -12 6570 6455 6 931 5589 64 1 4 chr6 45476965 45477733 -104039304 - L1Md_F2 LINE L1 -289 6293 5528 6 931 2169 68 0 0 chr6 45477728 45478006 -104039031 + L1Md_F2 LINE L1 5259 5536 -347 6 931 432 0 0 0 chr6 45478297 45478345 -104038692 + (TTA)n Simple_repeat Simple_repeat 3 50 0 6 931 891 146 0 20 chr6 45478345 45478492 -104038545 - B1_Mus1 SINE Alu -4 144 1 6 931 3790 259 78 41 chr6 45479434 45480626 -104036411 - Lx6 LINE L1 -6 7454 6219 6 931 505 191 101 7 chr6 45480613 45480761 -104036276 - L1_Mur3 LINE L1 -4220 1660 1499 6 931 862 239 15 15 chr6 45480761 45480965 -104036072 + URR1B DNA MER1_type 1 204 -21 6 931 952 190 130 4 chr6 45480974 45481103 -104035934 - L1_Mur3 LINE L1 -4374 1506 1364 6 931 1897 121 13 20 chr6 45481103 45481406 -104035631 - L1_Mus2 LINE L1 -4 6562 6262 6 931 1674 195 75 22 chr6 45481406 45481882 -104035155 - L1_Mur3 LINE L1 -4517 1363 859 6 116 537 320 67 27 chr6 45481936 45482308 -104034729 - L1_Mur3 LINE L1 -7246 482 96 6 932 390 108 0 0 chr6 45482313 45482378 -104034659 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 6 932 28 61 0 0 chr6 45482673 45482722 -104034315 + AT_rich Low_complexity Low_complexity 1 49 0 6 932 239 260 0 72 chr6 45482854 45482937 -104034100 - MIRb SINE MIR -5 263 187 6 932 450 319 22 0 chr6 45483809 45483944 -104033093 - B1_Mur2 SINE Alu -7 142 5 6 932 3043 38 0 0 chr6 45484658 45485026 -104032011 - L1Md_T LINE L1 -1 6581 6214 6 932 577 281 40 136 chr6 45486108 45486285 -104030752 + B3A SINE B2 1 160 -33 6 932 218 266 31 0 chr6 45486286 45486350 -104030687 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 6 932 321 26 0 0 chr6 45486498 45486536 -104030501 + (TTA)n Simple_repeat Simple_repeat 1 38 0 6 932 184 30 0 57 chr6 45487529 45487564 -104029473 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 932 577 156 0 149 chr6 45489144 45489332 -104027705 - Lx9 LINE L1 -7 7637 7478 6 932 288 0 0 0 chr6 45489332 45489364 -104027673 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 932 23 33 0 0 chr6 45489364 45489394 -104027643 + AT_rich Low_complexity Low_complexity 1 30 0 6 932 248 91 23 0 chr6 45489757 45489801 -104027236 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 6 932 25 0 0 0 chr6 45490016 45490041 -104026996 + AT_rich Low_complexity Low_complexity 1 25 0 6 932 591 15 0 0 chr6 45490083 45490151 -104026886 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 932 263 305 92 144 chr6 45490555 45490674 -104026363 + B3A SINE B2 53 165 -33 6 932 482 55 27 0 chr6 45490674 45490747 -104026290 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 6 932 263 305 92 144 chr6 45490747 45490780 -104026257 + B3A SINE B2 166 197 -1 6 932 486 0 0 0 chr6 45491506 45491560 -104025477 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 932 25 0 0 0 chr6 45491618 45491643 -104025394 + AT_rich Low_complexity Low_complexity 1 25 0 6 932 21 0 0 0 chr6 45491736 45491757 -104025280 + AT_rich Low_complexity Low_complexity 1 21 0 6 932 2537 145 29 9 chr6 45491785 45492237 -104024800 + Lx2A LINE L1 6547 7007 -1 6 932 215 0 20 100 chr6 45492245 45492295 -104024742 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 6 932 249 33 0 0 chr6 45492894 45492924 -104024113 + (CTAA)n Simple_repeat Simple_repeat 3 32 0 6 932 193 148 78 8 chr6 45492932 45493061 -104023976 + (TA)n Simple_repeat Simple_repeat 2 139 0 6 932 365 109 16 0 chr6 45493084 45493148 -104023889 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 6 932 315 286 31 0 chr6 45493148 45493246 -104023791 - RMER12 LTR ERVK -477 845 745 6 932 855 296 0 18 chr6 45493951 45494168 -104022869 + B3 SINE B2 1 213 -3 6 932 486 98 0 0 chr6 45495251 45495333 -104021704 + (TG)n Simple_repeat Simple_repeat 2 83 0 6 932 509 202 15 85 chr6 45495362 45495492 -104021545 - B1_Mur1 SINE Alu 0 149 29 6 932 2028 187 7 69 chr6 45495534 45495954 -104021083 - ORR1B1 LTR MaLR 0 394 1 6 932 419 35 18 0 chr6 45496023 45496080 -104020957 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 932 376 372 76 0 chr6 45496089 45496234 -104020803 - B3A SINE B2 -42 156 1 6 932 1352 159 59 130 chr6 45496321 45496675 -104020362 + ORR1A4 LTR MaLR 1 329 0 6 932 610 370 20 8 chr6 45496675 45496926 -104020111 + B4A SINE B4 21 274 -18 6 932 447 92 0 0 chr6 45497702 45497767 -104019270 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 932 216 267 0 0 chr6 45498935 45498980 -104018057 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 932 683 275 52 12 chr6 45500097 45500270 -104016767 + B3 SINE B2 37 216 0 1 932 3072 73 0 10 chr6 45500441 45500841 -104016196 + MTA_Mm LTR MaLR 1 396 0 2 932 415 319 14 35 chr6 45500932 45501075 -104015962 + B4 SINE B4 1 140 -152 3 932 364 17 50 33 chr6 45501622 45501682 -104015355 + (TTTTTG)n Simple_repeat Simple_repeat 2 62 0 4 932 250 315 31 42 chr6 45501989 45502085 -104014952 - PB1D10 SINE Alu -17 100 6 5 932 483 73 0 0 chr6 45502149 45502217 -104014820 + (T)n Simple_repeat Simple_repeat 1 68 0 6 932 773 59 0 0 chr6 45502217 45502318 -104014719 - B1_Mus2 SINE Alu 0 147 47 7 932 294 202 132 88 chr6 45502260 45502374 -104014663 - RLTR25B LTR ERVK -519 509 391 8 932 21 36 0 0 chr6 45502807 45502835 -104014202 + AT_rich Low_complexity Low_complexity 1 28 0 9 932 240 163 0 0 chr6 45503093 45503136 -104013901 + T-rich Low_complexity Low_complexity 1 43 0 1 932 8666 125 17 9 chr6 45503161 45504732 -104012305 - Lx3_Mus LINE L1 -1 7008 5423 1 932 8451 69 4 1 chr6 45504718 45505848 -104011189 - Lx3_Mus LINE L1 -837 5049 3916 1 932 5681 70 51 0 chr6 45505848 45505986 -104011051 - RLTR13C2 LTR ERVK 0 808 660 1 932 1399 76 15 5 chr6 45505986 45506185 -104010852 - L1Md_F2 LINE L1 -4 6578 6378 1 932 5681 70 51 0 chr6 45506185 45506815 -104010222 - RLTR13C2 LTR ERVK -149 659 2 1 932 229 61 0 0 chr6 45506815 45506848 -104010189 - Lx3_Mus LINE L1 -1965 3921 3889 1 932 228 200 0 0 chr6 45506849 45506924 -104010113 + T-rich Low_complexity Low_complexity 1 75 0 1 932 1875 104 0 7 chr6 45506927 45507226 -104009811 - Lx3_Mus LINE L1 -2010 3876 3580 1 932 553 226 14 114 chr6 45507206 45507426 -104009611 - Lx3_Mus LINE L1 -6632 352 155 1 932 947 88 15 0 chr6 45508110 45508247 -104008790 - L1Md_F2 LINE L1 -12 6570 6432 1 932 1728 45 0 26 chr6 45508247 45508473 -104008564 + L1Md_F2 LINE L1 6183 6402 -180 1 932 360 0 0 0 chr6 45508498 45508538 -104008499 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 932 536 330 29 5 chr6 45508547 45508751 -104008286 - ID_B1 SINE B4 -8 216 8 1 932 27 0 0 0 chr6 45510429 45510456 -104006581 + AT_rich Low_complexity Low_complexity 1 27 0 1 932 490 238 17 40 chr6 45512220 45512395 -104004642 + L1_Rod LINE L1 4127 4297 -1550 1 932 467 284 52 7 chr6 45512504 45512639 -104004398 + B1_Mus1 SINE Alu 1 141 -7 2 932 2398 60 0 3 chr6 45513396 45513713 -104003324 + L1Md_F2 LINE L1 6265 6580 -2 2 932 693 97 16 83 chr6 45514496 45514688 -104002349 + GA-rich Low_complexity Low_complexity 2 180 0 2 932 322 175 25 0 chr6 45514767 45514847 -104002190 + GA-rich Low_complexity Low_complexity 3 84 0 2 932 269 333 12 0 chr6 45515196 45515277 -104001760 - MER34A LTR ERV1 -462 109 28 2 932 244 70 23 23 chr6 45515825 45515869 -104001168 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2 932 26 98 0 0 chr6 45517104 45517186 -103999851 + AT_rich Low_complexity Low_complexity 1 82 0 2 932 990 213 71 4 chr6 45517282 45517536 -103999501 - Lx2A1 LINE L1 -6 7002 6732 2 932 1904 229 20 50 chr6 45517644 45518181 -103998856 - Lx9 LINE L1 -62 7582 7062 2 932 254 356 61 0 chr6 45519350 45519465 -103997572 + MIR SINE MIR 71 192 -70 2 932 26 30 0 0 chr6 45519672 45519705 -103997332 + AT_rich Low_complexity Low_complexity 1 33 0 3 932 417 103 0 0 chr6 45519705 45519773 -103997264 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 932 399 316 45 8 chr6 45519774 45519908 -103997129 - RSINE1 SINE B4 -24 141 3 3 932 443 327 11 126 chr6 45520690 45520872 -103996165 + RSINE1 SINE B4 5 165 0 3 932 1262 275 37 20 chr6 45521731 45522083 -103994954 + ORR1D2 LTR MaLR 13 370 0 3 932 1709 295 22 17 chr6 45522096 45522676 -103994361 + Lx8 LINE L1 6418 7000 -473 3 932 2475 246 27 12 chr6 45522985 45523566 -103993471 + Lx6 LINE L1 6286 6878 -582 3 932 441 0 0 0 chr6 45523566 45523615 -103993422 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 932 234 0 0 0 chr6 45523617 45523643 -103993394 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 932 2475 248 85 24 chr6 45523643 45523952 -103993085 + Lx6 LINE L1 6851 7137 -323 3 932 5724 112 44 13 chr6 45524191 45525062 -103991975 - Lx LINE L1 0 6654 5757 3 932 572 367 75 11 chr6 45525584 45525851 -103991186 + Tigger7 DNA MER2_type 25 308 -2183 4 932 1124 289 110 22 chr6 45525855 45526219 -103990818 + MTD LTR MaLR 10 405 -14 4 932 484 278 199 22 chr6 45526260 45526532 -103990505 + Tigger7 DNA MER2_type 2172 2491 0 4 932 270 307 147 25 chr6 45526682 45526879 -103990158 + MIRc SINE MIR 14 234 -34 4 932 324 0 0 0 chr6 45527081 45527117 -103989920 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 932 288 0 0 0 chr6 45527117 45527148 -103989889 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 932 509 218 39 10 chr6 45527491 45527593 -103989444 - PB1D9 SINE Alu -10 110 6 4 932 290 216 20 129 chr6 45527621 45527722 -103989315 - B1_Mur3 SINE Alu 0 149 60 4 932 260 146 62 0 chr6 45527694 45527742 -103989295 + B1_Mus2 SINE Alu 97 147 0 4 932 294 338 43 14 chr6 45528964 45529102 -103987935 - B3 SINE B2 -28 188 47 4 932 30 27 0 0 chr6 45529233 45529270 -103987767 + AT_rich Low_complexity Low_complexity 1 37 0 4 932 651 350 48 23 chr6 45530440 45530750 -103986287 - MLT1A0 LTR MaLR -10 355 38 5 932 232 323 104 100 chr6 45531301 45531552 -103985485 - ORR1E LTR MaLR -17 342 91 5 932 279 21 62 0 chr6 45532372 45532420 -103984617 + (TTTTG)n Simple_repeat Simple_repeat 3 53 0 5 932 603 249 47 78 chr6 45532421 45532591 -103984446 - ORR1D2 LTR MaLR -16 354 183 5 932 339 130 0 0 chr6 45532591 45532645 -103984392 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 932 603 249 47 78 chr6 45532645 45532666 -103984371 - ORR1D2 LTR MaLR -188 182 169 5 932 536 167 7 0 chr6 45532673 45532817 -103984220 + GA-rich Low_complexity Low_complexity 1 145 0 5 932 632 268 47 6 chr6 45532817 45532986 -103984051 - ORR1D2 LTR MaLR -194 176 1 5 932 21 71 0 0 chr6 45533255 45533297 -103983740 + AT_rich Low_complexity Low_complexity 1 42 0 5 932 265 160 13 51 chr6 45533493 45533572 -103983465 + T-rich Low_complexity Low_complexity 3 78 0 5 932 24 0 0 0 chr6 45533603 45533627 -103983410 + AT_rich Low_complexity Low_complexity 1 24 0 5 932 207 0 0 0 chr6 45535049 45535072 -103981965 + (A)n Simple_repeat Simple_repeat 1 23 0 5 932 250 338 0 0 chr6 45535917 45535985 -103981052 + tRNA-Ala-GCA tRNA tRNA 1 68 -7 6 932 21 36 0 0 chr6 45536025 45536053 -103980984 + AT_rich Low_complexity Low_complexity 1 28 0 6 932 396 0 0 0 chr6 45536277 45536321 -103980716 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 932 2343 111 9 70 chr6 45536485 45536913 -103980124 - L1_Mus4 LINE L1 -8 6628 6227 6 932 393 168 10 29 chr6 45537199 45537303 -103979734 + (TAA)n Simple_repeat Simple_repeat 2 103 0 6 932 202 305 51 0 chr6 45537961 45538020 -103979017 + MIR SINE MIR 83 144 -64 6 932 2912 68 29 3 chr6 45538056 45538442 -103978595 + L1_Mus2 LINE L1 6171 6566 0 6 932 22 35 0 0 chr6 45538948 45538977 -103978060 + AT_rich Low_complexity Low_complexity 1 29 0 6 932 2216 288 14 5 chr6 45539684 45540243 -103976794 - Lx5 LINE L1 -5 7045 6482 6 932 2077 215 14 7 chr6 45540246 45540682 -103976355 - Lx2B LINE L1 -409 6591 6153 6 932 316 271 45 45 chr6 45540859 45540971 -103976066 + MIRc SINE MIR 114 225 -43 7 932 193 362 80 30 chr6 45541536 45541736 -103975301 - MIRm SINE MIR -35 233 24 7 932 234 0 0 0 chr6 45542049 45542075 -103974962 + (T)n Simple_repeat Simple_repeat 1 26 0 7 932 195 114 0 0 chr6 45543003 45543038 -103973999 + (T)n Simple_repeat Simple_repeat 1 35 0 7 932 306 162 0 0 chr6 45543906 45543980 -103973057 + (TATG)n Simple_repeat Simple_repeat 2 75 0 7 932 607 257 113 34 chr6 45544246 45544423 -103972614 + B3 SINE B2 2 192 -24 7 932 389 36 0 18 chr6 45545111 45545167 -103971870 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 932 691 230 44 0 chr6 45545860 45545995 -103971042 + B1_Mur1 SINE Alu 2 142 -7 7 932 344 309 101 32 chr6 45546072 45546289 -103970748 + MLT1D LTR MaLR 271 502 -3 7 932 5460 40 0 0 chr6 45546502 45547149 -103969888 - L1Md_F2 LINE L1 -15 6567 5921 7 932 557 281 46 0 chr6 45547739 45547892 -103969145 + RSINE1 SINE B4 2 161 -4 8 932 7249 92 21 7 chr6 45548087 45549173 -103967864 - L1_Mus3 LINE L1 -3 6635 5534 8 932 2876 166 4 0 chr6 45549166 45549671 -103967366 + L1_Mus3 LINE L1 5020 5526 -357 8 932 309 289 57 69 chr6 45549949 45550151 -103966886 - MLT1C LTR MaLR -142 248 34 8 932 4048 60 9 9 chr6 45551844 45552379 -103964658 + L1Md_F2 LINE L1 6046 6580 -2 8 932 498 33 0 0 chr6 45552467 45552527 -103964510 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 932 192 77 0 0 chr6 45552555 45552581 -103964456 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 8 932 259 306 0 10 chr6 45553944 45554043 -103962994 + (TA)n Simple_repeat Simple_repeat 1 98 0 8 932 197 119 24 0 chr6 45555192 45555234 -103961803 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 932 770 94 148 0 chr6 45555699 45555827 -103961210 + L1_Mur1 LINE L1 5417 5563 -323 8 932 234 316 41 31 chr6 45556454 45556552 -103960485 - MIR SINE MIR -66 142 44 8 932 454 333 69 5 chr6 45557022 45557239 -103959798 - Lx8 LINE L1 -235 7238 7008 9 932 516 324 0 0 chr6 45557690 45557838 -103959199 + B1_Mur3 SINE Alu 2 149 0 9 932 212 128 0 41 chr6 45558032 45558081 -103958956 + T-rich Low_complexity Low_complexity 3 49 0 9 932 5752 205 38 11 chr6 45558082 45560148 -103956889 - Lx4B LINE L1 -1 7057 4832 9 932 432 151 0 0 chr6 45561169 45561255 -103955782 + Lx2B LINE L1 6911 6996 -4 9 932 1121 78 0 0 chr6 45561266 45561407 -103955630 + B1_Mus1 SINE Alu 1 141 -7 9 932 180 53 25 50 chr6 45561411 45561451 -103955586 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 932 478 86 25 0 chr6 45561899 45561980 -103955057 + (TA)n Simple_repeat Simple_repeat 1 83 0 9 932 297 183 0 0 chr6 45562062 45562122 -103954915 + (TA)n Simple_repeat Simple_repeat 1 60 0 9 932 24 0 0 0 chr6 45563059 45563083 -103953954 + AT_rich Low_complexity Low_complexity 1 24 0 9 932 686 74 0 10 chr6 45565106 45565202 -103951835 + B1_Mm SINE Alu 48 142 -5 1 932 194 0 39 0 chr6 45565207 45565233 -103951804 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 932 33 0 0 0 chr6 45565682 45565715 -103951322 + AT_rich Low_complexity Low_complexity 1 33 0 1 932 297 0 0 0 chr6 45565736 45565769 -103951268 + (A)n Simple_repeat Simple_repeat 1 33 0 1 932 4427 256 84 99 chr6 45566397 45567259 -103949778 - Lx7 LINE L1 -102 7594 6802 1 932 261 0 0 0 chr6 45567259 45567288 -103949749 + (AGTAG)n Simple_repeat Simple_repeat 3 31 0 1 932 4427 256 84 99 chr6 45567288 45568238 -103948799 - Lx7 LINE L1 -895 6801 5811 1 932 4076 211 49 74 chr6 45568291 45569770 -103947267 - L1_Mur3 LINE L1 -4133 1747 300 1 932 238 304 13 0 chr6 45570736 45570815 -103946222 - RMER1C Other Other -14 1328 1249 1 932 314 378 16 21 chr6 45570960 45571149 -103945888 - Lx8 LINE L1 -235 7238 7051 1 932 283 265 48 0 chr6 45571678 45571761 -103945276 - Lx8 LINE L1 -1567 5906 5820 1 932 288 260 108 19 chr6 45571731 45571888 -103945149 - L1MA6 LINE L1 -423 5877 5707 1 932 315 136 0 0 chr6 45572394 45572453 -103944584 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 932 313 270 29 7 chr6 45572946 45573084 -103943953 + (TA)n Simple_repeat Simple_repeat 2 142 0 1 932 693 302 74 63 chr6 45573127 45573572 -103943465 - MT2A LTR ERVL -2 531 82 1 932 4597 151 39 8 chr6 45573573 45574403 -103942634 + Lx LINE L1 5800 6654 0 1 932 279 253 71 12 chr6 45574445 45574529 -103942508 - MT2A LTR ERVL -444 89 1 1 932 546 309 91 27 chr6 45574968 45575154 -103941883 + B3A SINE B2 6 203 -13 1 932 246 269 215 0 chr6 45576077 45576170 -103940867 + Lx8 LINE L1 7182 7294 -179 1 932 25 65 0 0 chr6 45576287 45576333 -103940704 + AT_rich Low_complexity Low_complexity 1 46 0 1 932 26 30 0 0 chr6 45578782 45578815 -103938222 + AT_rich Low_complexity Low_complexity 1 33 0 1 932 25 0 0 0 chr6 45579437 45579462 -103937575 + AT_rich Low_complexity Low_complexity 1 25 0 1 932 218 284 53 26 chr6 45580094 45580170 -103936867 + ID SINE ID 3 80 -144 1 932 225 309 36 42 chr6 45580291 45580406 -103936631 - MIRb SINE MIR -2 206 91 1 932 2670 98 51 13 chr6 45581175 45581567 -103935470 + MTB_Mm LTR MaLR 1 407 0 1 932 459 0 0 0 chr6 45582209 45582260 -103934777 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 932 576 42 0 0 chr6 45582260 45582330 -103934707 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 932 311 320 32 0 chr6 45583119 45583218 -103933819 + B1F SINE Alu 13 112 -5 1 932 22 0 0 0 chr6 45583218 45583240 -103933797 + AT_rich Low_complexity Low_complexity 1 22 0 1 932 510 17 0 0 chr6 45584589 45584648 -103932389 + (GAAAA)n Simple_repeat Simple_repeat 2 60 0 1 932 38063 11 1 7 chr6 45585200 45590596 -103926441 + L1Md_A LINE L1 232 5586 -297 1 932 8840 13 0 0 chr6 45590596 45591592 -103925445 + L1Md_A LINE L1 5587 6582 0 1 932 410 369 56 70 chr6 45591813 45592099 -103924938 + B4 SINE B4 1 282 -10 1 932 279 93 0 0 chr6 45592102 45592145 -103924892 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 932 510 114 0 0 chr6 45592145 45592233 -103924804 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 932 352 333 38 8 chr6 45593565 45593698 -103923339 - L2 LINE L2 -540 2879 2743 1 932 1089 307 80 2 chr6 45594395 45594793 -103922244 + Lx8 LINE L1 6909 7337 -136 1 932 491 303 35 25 chr6 45595177 45595199 -103921838 - B3 SINE B2 -3 213 193 1 932 1353 244 78 18 chr6 45595199 45595596 -103921441 - MTC LTR MaLR 0 421 1 1 932 491 303 35 25 chr6 45595596 45595776 -103921261 - B3 SINE B2 -24 192 9 1 932 24 0 0 0 chr6 45596063 45596087 -103920950 + AT_rich Low_complexity Low_complexity 1 24 0 1 932 1625 204 56 25 chr6 45596645 45597002 -103920035 - ORR1C1 LTR MaLR -10 368 1 1 932 642 273 15 40 chr6 45597100 45597302 -103919735 + B3A SINE B2 2 198 0 1 932 29 70 0 0 chr6 45599648 45599705 -103917332 + AT_rich Low_complexity Low_complexity 1 57 0 1 932 2241 237 35 13 chr6 45599741 45600339 -103916698 - RMER19C LTR ERVK 0 611 1 1 932 337 82 49 0 chr6 45602358 45602419 -103914618 + (TTTTG)n Simple_repeat Simple_repeat 1 64 0 1 932 27 73 0 0 chr6 45602676 45602731 -103914306 + AT_rich Low_complexity Low_complexity 1 55 0 1 932 263 296 77 19 chr6 45603194 45603349 -103913688 - L1MB1 LINE L1 -6 6162 5999 1 932 334 333 58 21 chr6 45603719 45603909 -103913128 - B3A SINE B2 -1 197 1 1 932 2235 203 35 53 chr6 45604513 45605076 -103911961 - RLTR31_Mur LTR ERVK 0 553 1 1 932 799 221 17 34 chr6 45605077 45605316 -103911721 - RMER3D-int LTR ERVK -1 2841 2607 1 932 1591 199 33 15 chr6 45605335 45605671 -103911366 - RMER3D-int LTR ERVK -1059 1783 1442 1 932 182 136 43 64 chr6 45605673 45605720 -103911317 - L3 LINE CR1 -2479 2010 1965 1 932 1676 214 33 42 chr6 45605832 45606798 -103910239 - RMER3D-int LTR ERVK -1452 1390 20 1 932 285 183 234 11 chr6 45606852 45606946 -103910091 - RLTR17 LTR ERVK -73 619 505 1 932 811 212 109 67 chr6 45606920 45607301 -103909736 - RLTR31_Mur LTR ERVK -251 441 1 1 932 1805 325 57 8 chr6 45607553 45608208 -103908829 - MTE-int LTR MaLR -499 1081 395 1 932 540 368 53 45 chr6 45608650 45608895 -103908142 - B4A SINE B4 -44 248 2 1 932 640 240 34 34 chr6 45608929 45609136 -103907901 - Lx7 LINE L1 0 7696 7490 1 932 3981 231 64 28 chr6 45609137 45610185 -103906852 - L1_Mur3 LINE L1 -6486 1226 141 1 932 1790 145 35 10 chr6 45610183 45610496 -103906541 - Lx3B LINE L1 -840 6133 5813 1 932 21 0 0 0 chr6 45610840 45610861 -103906176 + AT_rich Low_complexity Low_complexity 1 21 0 1 932 412 234 9 45 chr6 45610914 45611026 -103906011 - B1_Mur2 SINE Alu -1 148 41 1 932 378 0 0 0 chr6 45611520 45611562 -103905475 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 932 226 342 13 0 chr6 45612276 45612355 -103904682 - MER94 DNA AcHobo -3 131 52 1 932 240 296 0 0 chr6 45612953 45613007 -103904030 - ID4 SINE ID -25 58 5 1 933 582 75 56 0 chr6 45613303 45613410 -103903627 + (TCTCTG)n Simple_repeat Simple_repeat 6 118 0 1 933 513 324 21 53 chr6 45613412 45613601 -103903436 - B3A SINE B2 -15 183 1 1 933 22 56 0 0 chr6 45614255 45614291 -103902746 + AT_rich Low_complexity Low_complexity 1 36 0 1 933 572 315 55 5 chr6 45614308 45614509 -103902528 - Lx9 LINE L1 -1133 6511 6301 1 933 1422 274 138 69 chr6 45614568 45615557 -103901480 + Lx9 LINE L1 6585 7641 -3 1 933 313 88 53 0 chr6 45616065 45616122 -103900915 + (TCTCCC)n Simple_repeat Simple_repeat 4 63 0 1 933 309 26 0 0 chr6 45616278 45616316 -103900721 + (TTG)n Simple_repeat Simple_repeat 1 38 0 1 933 311 157 0 0 chr6 45616373 45616443 -103900594 - Lx4A LINE L1 0 7058 6989 1 933 282 56 0 0 chr6 45617516 45617552 -103899485 + (TAGA)n Simple_repeat Simple_repeat 1 36 0 1 933 279 0 0 0 chr6 45618690 45618721 -103898316 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 933 638 126 48 0 chr6 45619244 45619347 -103897690 + L1Md_F2 LINE L1 6354 6461 -121 1 933 1490 96 75 0 chr6 45619325 45619560 -103897477 - L1_Mm LINE L1 -229 5657 5394 1 933 435 329 73 38 chr6 45620335 45620623 -103896414 - Charlie5 DNA MER1_type -132 2492 2195 1 933 14534 93 13 12 chr6 45621105 45623888 -103893149 + L1Md_F2 LINE L1 480 3266 -2617 1 933 497 48 0 0 chr6 45623886 45623948 -103893089 - L1_Mm LINE L1 -1048 4835 4774 1 933 2582 81 6 0 chr6 45623945 45624293 -103892744 + L1Md_F2 LINE L1 5236 5585 -298 1 933 7132 81 1 18 chr6 45624294 45625288 -103891749 + L1Md_F2 LINE L1 5587 6563 -19 1 933 313 216 0 0 chr6 45625325 45625399 -103891638 - Lx LINE L1 -7 6647 6574 1 933 200 254 15 45 chr6 45626700 45626766 -103890271 - L2 LINE L2 -2085 1334 1271 1 933 4773 44 7 2 chr6 45626901 45627491 -103889546 + L1Md_F2 LINE L1 5980 6572 -10 1 933 353 348 142 31 chr6 45627795 45628056 -103888981 + B4A SINE B4 3 292 0 1 933 21 36 0 0 chr6 45628234 45628262 -103888775 + AT_rich Low_complexity Low_complexity 1 28 0 1 933 5735 14 1 0 chr6 45629124 45629779 -103887258 - L1Md_A LINE L1 -5551 1173 518 1 933 432 37 0 0 chr6 45629864 45629918 -103887119 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 933 312 70 0 0 chr6 45631364 45631407 -103885630 + (TTG)n Simple_repeat Simple_repeat 3 45 0 1 933 522 0 0 0 chr6 45631550 45631608 -103885429 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 933 11492 6 0 0 chr6 45631686 45632979 -103884058 + L1Md_A LINE L1 4294 5586 -297 1 933 9010 3 0 0 chr6 45632979 45633975 -103883062 + L1Md_A LINE L1 5587 6582 0 1 933 1087 266 55 104 chr6 45634389 45634804 -103882233 + MTD LTR MaLR 25 419 0 1 933 299 25 25 0 chr6 45635932 45635972 -103881065 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1 933 532 293 19 48 chr6 45636189 45636397 -103880640 + Lx6 LINE L1 7240 7441 -19 1 933 407 250 99 141 chr6 45636634 45636988 -103880049 - L1MA7 LINE L1 -435 5856 5518 1 933 582 118 0 0 chr6 45637011 45637113 -103879924 + (TG)n Simple_repeat Simple_repeat 1 102 0 1 933 317 59 39 0 chr6 45637115 45637166 -103879871 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 1 933 583 323 12 95 chr6 45637176 45637419 -103879618 + MTD LTR MaLR 48 270 -149 1 933 800 213 49 11 chr6 45637572 45637757 -103879280 - URR1A DNA MER1_type -1 225 34 1 933 346 299 0 0 chr6 45637883 45637960 -103879077 + MER5A1 DNA MER1_type 34 110 -56 1 933 16808 79 3 3 chr6 45637966 45640940 -103876097 - L1Md_F2 LINE L1 -12 6570 3597 1 933 1110 62 0 0 chr6 45640939 45641083 -103875954 + L1Md_F2 LINE L1 3461 3604 -2279 1 933 339 315 77 0 chr6 45641083 45641213 -103875824 + MTD LTR MaLR 256 395 -24 1 933 350 338 94 40 chr6 45641252 45641518 -103875519 - L1M3 LINE L1 -876 5264 4980 1 933 1486 104 13 9 chr6 45641518 45641750 -103875287 - L1_Mus3 LINE L1 -8 6630 6398 1 933 350 338 94 40 chr6 45641750 45642038 -103874999 - L1M3 LINE L1 -1161 4979 4680 1 933 277 258 246 15 chr6 45642069 45642337 -103874700 - L1M3 LINE L1 -1665 4475 4146 1 933 268 238 16 0 chr6 45642337 45642400 -103874637 + CT-rich Low_complexity Low_complexity 2 65 0 1 933 297 340 64 116 chr6 45642524 45642697 -103874340 + B4 SINE B4 67 230 -62 1 933 449 290 60 52 chr6 45642698 45643047 -103873990 - L1M3 LINE L1 -2058 4082 3731 1 933 620 337 55 21 chr6 45643328 45643804 -103873233 - L1M3 LINE L1 -2495 3645 3154 1 933 450 0 0 0 chr6 45644504 45644554 -103872483 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 933 324 364 8 8 chr6 45644570 45644689 -103872348 - B3A SINE B2 -70 128 10 1 933 23 0 0 0 chr6 45645079 45645102 -103871935 + AT_rich Low_complexity Low_complexity 1 23 0 1 933 714 247 16 5 chr6 45645156 45645343 -103871694 + RMER1C Other Other 1154 1342 0 2 933 7881 166 36 67 chr6 45645481 45645873 -103871164 + L1_Mus4 LINE L1 4250 4639 -1244 2 933 186 71 0 0 chr6 45645873 45645901 -103871136 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2 933 7881 134 34 36 chr6 45645901 45647930 -103869107 + L1_Mus4 LINE L1 4640 6636 0 2 933 531 319 7 0 chr6 45648246 45648383 -103868654 + B3 SINE B2 3 140 -76 2 933 1320 183 207 28 chr6 45648383 45648711 -103868326 - RMER19C LTR ERVK 0 611 225 2 933 951 96 0 0 chr6 45649912 45650048 -103866989 + (TA)n Simple_repeat Simple_repeat 1 136 0 2 933 725 308 63 41 chr6 45650076 45650394 -103866643 + MER2 DNA MER2_type 16 340 -5 2 933 226 206 17 78 chr6 45652137 45652253 -103864784 + T-rich Low_complexity Low_complexity 4 112 0 2 933 363 132 0 0 chr6 45652259 45652327 -103864710 + (CTTTG)n Simple_repeat Simple_repeat 2 69 0 2 933 345 375 39 13 chr6 45652608 45652762 -103864275 + B3 SINE B2 13 170 -46 2 933 390 319 64 36 chr6 45653370 45653510 -103863527 + B4A SINE B4 8 151 -141 2 933 3322 247 71 52 chr6 45653675 45654063 -103862974 - L1_Rod LINE L1 -253 5594 5180 2 933 405 0 0 0 chr6 45654063 45654108 -103862929 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 933 3322 247 71 52 chr6 45654108 45655142 -103861895 - L1_Rod LINE L1 -668 5179 4147 2 933 360 0 0 0 chr6 45655289 45655329 -103861708 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 933 396 0 0 0 chr6 45655329 45655372 -103861665 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 933 21 57 0 0 chr6 45656120 45656155 -103860882 + AT_rich Low_complexity Low_complexity 1 35 0 2 933 245 338 158 26 chr6 45656159 45656393 -103860644 - L3 LINE CR1 -883 3606 3342 2 933 1606 234 56 25 chr6 45657430 45657825 -103859212 + MTD LTR MaLR 1 407 -12 2 933 558 43 0 0 chr6 45658318 45658387 -103858650 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 933 1037 199 22 4 chr6 45658396 45658623 -103858414 - Lx LINE L1 -7 6647 6417 2 933 615 315 6 0 chr6 45658729 45658891 -103858146 + MTD LTR MaLR 2 164 -255 2 933 396 103 0 0 chr6 45659009 45659067 -103857970 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 933 3692 38 0 7 chr6 45659116 45659565 -103857472 + L1Md_F2 LINE L1 6124 6569 -13 2 933 216 0 0 0 chr6 45659573 45659597 -103857440 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 2 933 460 338 14 36 chr6 45660478 45660616 -103856421 + ID_B1 SINE B4 82 216 -8 2 933 230 111 26 65 chr6 45661398 45661475 -103855562 + (TAAA)n Simple_repeat Simple_repeat 3 76 0 2 933 254 397 45 52 chr6 45661600 45661754 -103855283 - LTR16A LTR ERVL -279 172 20 2 933 414 0 0 0 chr6 45661947 45661993 -103855044 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 933 273 287 67 44 chr6 45662071 45662206 -103854831 + Lx8 LINE L1 6757 6894 -579 2 933 308 353 71 0 chr6 45662206 45662376 -103854661 + MER58B DNA MER1_type 156 337 -4 2 933 26 0 0 0 chr6 45662550 45662576 -103854461 + AT_rich Low_complexity Low_complexity 1 26 0 2 933 26 30 0 0 chr6 45663761 45663794 -103853243 + AT_rich Low_complexity Low_complexity 1 33 0 2 933 367 119 60 0 chr6 45663821 45663888 -103853149 - L1_Mus3 LINE L1 -7 6631 6561 2 933 455 145 52 47 chr6 45663889 45664022 -103853015 + L1_Mus3 LINE L1 6479 6581 -55 2 933 183 42 0 0 chr6 45664277 45664301 -103852736 + (CAT)n Simple_repeat Simple_repeat 3 26 0 2 933 22 70 0 0 chr6 45666481 45666524 -103850513 + AT_rich Low_complexity Low_complexity 1 43 0 2 933 1577 172 14 3 chr6 45666643 45666935 -103850102 - Lx LINE L1 -6 6648 6354 2 933 469 76 12 12 chr6 45667915 45667995 -103849042 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 933 396 0 0 0 chr6 45668259 45668303 -103848734 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 933 2439 75 3 0 chr6 45668465 45668786 -103848251 + L1_Mus1 LINE L1 6246 6567 0 2 933 22 35 0 0 chr6 45669800 45669829 -103847208 + AT_rich Low_complexity Low_complexity 1 29 0 2 933 312 311 35 94 chr6 45671767 45671969 -103845068 + B3A SINE B2 2 191 -7 2 933 509 168 9 0 chr6 45673023 45673130 -103843907 + GA-rich Low_complexity Low_complexity 1 108 0 2 933 274 272 130 46 chr6 45673377 45673485 -103843552 + MER5A1 DNA MER1_type 4 120 -46 2 933 197 337 49 69 chr6 45673498 45673600 -103843437 + L3 LINE CR1 4139 4238 -251 2 933 4884 176 54 8 chr6 45673617 45674557 -103842480 - Lx5 LINE L1 -399 6651 5669 2 933 1444 222 8 4 chr6 45674558 45674825 -103842212 + Lx5 LINE L1 6659 6926 -124 2 933 2420 231 22 49 chr6 45675169 45675797 -103841240 + RMER19C LTR ERVK 1 611 0 2 933 227 31 0 30 chr6 45676268 45676301 -103840736 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 2 933 693 299 126 52 chr6 45676303 45676709 -103840328 - RMER10A LTR ERVL -6 436 1 2 933 221 323 104 55 chr6 45677493 45677657 -103839380 - MIRb SINE MIR -9 259 88 2 933 266 275 149 44 chr6 45677960 45678074 -103838963 - B1_Mus2 SINE Alu -21 126 1 2 933 2733 108 20 18 chr6 45678086 45678534 -103838503 - Lx2 LINE L1 -996 6001 5547 2 933 4938 170 68 2 chr6 45678534 45679500 -103837537 + Lx2 LINE L1 5967 6996 -1 2 933 442 308 35 14 chr6 45679513 45679658 -103837379 + B1_Mur1 SINE Alu 1 148 -1 2 933 315 0 0 0 chr6 45680090 45680125 -103836912 + (T)n Simple_repeat Simple_repeat 1 35 0 2 933 1137 75 0 0 chr6 45680125 45680272 -103836765 - B1_Mus2 SINE Alu 0 147 1 2 933 221 331 73 41 chr6 45680586 45680709 -103836328 + MER5B DNA MER1_type 1 127 -51 2 933 1530 43 0 0 chr6 45680879 45681067 -103835970 - L1Md_T LINE L1 0 6582 6395 2 933 700 307 6 0 chr6 45681385 45681564 -103835473 + B3A SINE B2 1 180 -18 2 933 234 148 0 0 chr6 45681614 45681668 -103835369 + (T)n Simple_repeat Simple_repeat 1 54 0 2 933 359 313 81 58 chr6 45681705 45681987 -103835050 - MLT1C LTR MaLR -112 278 4 2 933 396 312 28 0 chr6 45682110 45682219 -103834818 + PB1D7 SINE Alu 1 112 -8 2 933 664 146 0 8 chr6 45683548 45683679 -103833358 - Lx LINE L1 -1 6653 6524 2 933 394 352 0 6 chr6 45683947 45684110 -103832927 + (TA)n Simple_repeat Simple_repeat 1 162 0 2 933 236 305 174 21 chr6 45684310 45684454 -103832583 - Lx8 LINE L1 -356 7117 6952 2 933 10211 58 4 5 chr6 45684614 45686656 -103830381 - L1Md_F2 LINE L1 0 6582 4537 2 933 6259 78 4 7 chr6 45686646 45688254 -103828783 - L1Md_F2 LINE L1 -3870 2013 410 2 933 636 50 0 0 chr6 45689358 45689438 -103827599 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 933 195 114 0 0 chr6 45689622 45689657 -103827380 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 933 516 367 93 12 chr6 45689675 45689934 -103827103 + B4A SINE B4 3 282 -10 2 933 450 36 0 0 chr6 45689967 45690023 -103827014 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 933 243 0 0 0 chr6 45690611 45690638 -103826399 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 933 668 72 59 85 chr6 45690797 45690950 -103826087 + L1_Mus4 LINE L1 6486 6634 -2 2 933 235 331 97 43 chr6 45691776 45692076 -103824961 + Lx8 LINE L1 7143 7458 -15 2 933 464 245 0 0 chr6 45692144 45692238 -103824799 + B3 SINE B2 96 189 -27 2 933 684 307 45 0 chr6 45692462 45692641 -103824396 - B4 SINE B4 -3 289 103 2 933 609 69 0 0 chr6 45692904 45692991 -103824046 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 933 242 164 18 0 chr6 45692992 45693047 -103823990 + GA-rich Low_complexity Low_complexity 2 57 0 2 933 857 172 0 12 chr6 45693049 45693220 -103823817 + (CAGAGA)n Simple_repeat Simple_repeat 6 174 0 2 933 263 217 41 55 chr6 45693296 45693369 -103823668 - PB1D7 SINE Alu -1 119 48 2 933 35 24 0 0 chr6 45693404 45693446 -103823591 + AT_rich Low_complexity Low_complexity 1 42 0 2 933 261 208 0 0 chr6 45693884 45693956 -103823081 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 933 259 186 39 10 chr6 45694106 45694209 -103822828 + (TA)n Simple_repeat Simple_repeat 2 107 0 2 933 23 33 0 0 chr6 45694321 45694351 -103822686 + AT_rich Low_complexity Low_complexity 1 30 0 2 933 663 13 0 0 chr6 45697136 45697212 -103819825 + (TTCTC)n Simple_repeat Simple_repeat 4 79 0 2 933 1007 67 0 43 chr6 45697223 45697364 -103819673 - B1_Mus1 SINE Alu -12 136 2 2 933 463 216 99 0 chr6 45697407 45697518 -103819519 + B1_Mur2 SINE Alu 15 136 -13 2 933 229 211 28 14 chr6 45697766 45697838 -103819199 + L1M4 LINE L1 3781 3853 -2293 2 933 340 370 29 34 chr6 45697870 45698108 -103818929 + L1M4 LINE L1 3922 4158 -1988 2 933 41 78 0 0 chr6 45698192 45698282 -103818755 + AT_rich Low_complexity Low_complexity 1 90 0 2 933 30064 132 33 14 chr6 45698295 45702464 -103814573 + L1_Mus1 LINE L1 98 4275 -1608 2 933 4428 72 0 3 chr6 45702464 45703038 -103813999 + L1Md_F2 LINE L1 6011 6582 0 2 933 30064 106 7 4 chr6 45703038 45705324 -103811713 + L1_Mus1 LINE L1 4276 6561 -6 2 933 309 255 126 11 chr6 45705433 45705528 -103811509 - B3A SINE B2 -35 163 58 2 933 33 0 0 0 chr6 45705965 45705998 -103811039 + AT_rich Low_complexity Low_complexity 1 33 0 2 933 252 0 0 0 chr6 45706083 45706111 -103810926 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2 933 447 63 0 0 chr6 45706251 45706314 -103810723 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 2 933 449 277 132 5 chr6 45706979 45707168 -103809869 + B3 SINE B2 4 216 0 2 933 385 311 56 72 chr6 45711349 45711696 -103805341 + MER67C LTR ERV1 25 400 -311 2 933 21 36 0 0 chr6 45712967 45712995 -103804042 + AT_rich Low_complexity Low_complexity 1 28 0 2 933 385 45 90 0 chr6 45713529 45713618 -103803419 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 933 233 291 43 0 chr6 45713751 45713868 -103803169 - Lx9 LINE L1 -147 7497 7376 2 933 180 325 56 49 chr6 45714612 45714774 -103802263 + L2 LINE L2 2902 3064 -355 2 933 487 250 0 0 chr6 45715361 45715453 -103801584 - Lx4B LINE L1 -689 6369 6278 2 933 23 0 0 0 chr6 45715678 45715701 -103801336 + AT_rich Low_complexity Low_complexity 1 23 0 2 933 606 14 0 0 chr6 45715727 45715798 -103801239 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 933 326 254 26 35 chr6 45715843 45715957 -103801080 - RLTR23 LTR ERV1 -4 426 314 3 933 290 259 123 0 chr6 45716320 45716401 -103800636 - B3A SINE B2 -107 91 1 3 933 21 36 0 0 chr6 45717099 45717127 -103799910 + AT_rich Low_complexity Low_complexity 1 28 0 3 933 228 195 0 0 chr6 45717435 45717476 -103799561 + B4A SINE B4 53 93 -199 3 933 364 224 29 58 chr6 45717498 45717602 -103799435 + B4A SINE B4 192 292 0 3 933 230 343 67 19 chr6 45717688 45717792 -103799245 - B1_Mus1 SINE Alu -13 135 27 3 933 316 340 93 87 chr6 45718053 45718340 -103798697 - B4A SINE B4 0 292 2 3 933 22 35 0 0 chr6 45718403 45718432 -103798605 + AT_rich Low_complexity Low_complexity 1 29 0 3 933 252 0 0 0 chr6 45718574 45718602 -103798435 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 933 242 157 39 0 chr6 45719168 45719219 -103797818 + GA-rich Low_complexity Low_complexity 2 54 0 3 933 330 196 0 0 chr6 45719670 45719726 -103797311 - B3 SINE B2 -98 118 63 3 933 1707 139 73 0 chr6 45720137 45720425 -103796612 - RLTR27 LTR ERVK 0 309 1 3 933 422 359 96 46 chr6 45720517 45720777 -103796260 + B4 SINE B4 4 276 -16 3 933 513 0 0 0 chr6 45720822 45720879 -103796158 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 933 325 380 0 0 chr6 45721488 45721646 -103795391 + (TG)n Simple_repeat Simple_repeat 1 158 0 3 933 250 352 21 0 chr6 45721668 45721810 -103795227 + (TATATG)n Simple_repeat Simple_repeat 6 150 0 3 933 234 81 0 0 chr6 45722241 45722278 -103794759 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 933 591 27 0 0 chr6 45722427 45722500 -103794537 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 933 290 266 89 0 chr6 45722508 45722587 -103794450 - RSINE1 SINE B4 0 165 80 3 933 302 261 56 0 chr6 45723343 45723442 -103793595 - B1F SINE Alu -2 125 15 3 933 22 35 0 0 chr6 45723712 45723741 -103793296 + AT_rich Low_complexity Low_complexity 1 29 0 3 933 625 244 12 60 chr6 45723886 45724052 -103792985 + ID_B1 SINE B4 67 224 0 3 933 2458 195 11 70 chr6 45724144 45724690 -103792347 + Lx2 LINE L1 6484 6997 0 3 933 283 227 55 33 chr6 45724704 45724795 -103792242 + L1MB1 LINE L1 6053 6145 -23 3 933 683 250 52 29 chr6 45725155 45725365 -103791672 - B3 SINE B2 0 216 2 3 933 9097 9 0 0 chr6 45725520 45727247 -103789790 - L1Md_T LINE L1 -12 6570 4844 3 933 274 358 32 32 chr6 45727757 45728008 -103789029 - L3 LINE CR1 -3296 1193 943 3 933 279 203 0 0 chr6 45728437 45728501 -103788536 + A-rich Low_complexity Low_complexity 1 64 0 3 933 419 380 51 5 chr6 45729486 45729703 -103787334 - MLT1G1 LTR MaLR -15 564 338 3 933 354 261 98 25 chr6 45729853 45729975 -103787062 - MLT1H1 LTR MaLR -422 133 3 3 933 821 274 87 76 chr6 45730831 45731142 -103785895 - MTE2b LTR MaLR -11 408 64 3 933 3470 20 2 0 chr6 45731142 45731537 -103785500 - MTA_Mm LTR MaLR 0 396 1 3 933 9644 16 0 0 chr6 45731537 45732635 -103784402 - MTA_Mm-int LTR MaLR 0 1098 1 3 933 3470 20 2 0 chr6 45732635 45733030 -103784007 - MTA_Mm LTR MaLR 0 396 1 3 933 422 314 82 124 chr6 45733030 45733142 -103783895 - MTE2b LTR MaLR -333 86 3 3 933 689 261 49 15 chr6 45733213 45733478 -103783559 - L1M2 LINE L1 -1683 4460 4187 3 933 517 206 114 45 chr6 45733494 45733626 -103783411 - B1_Mus1 SINE Alu 0 148 8 3 933 640 271 144 23 chr6 45733628 45733885 -103783152 - L1_Rod LINE L1 -1719 4128 3841 3 933 236 254 16 0 chr6 45734553 45734616 -103782421 + ID SINE ID 1 64 -160 3 933 225 270 53 26 chr6 45735039 45735115 -103781922 - RLTR23 LTR ERV1 -284 146 69 3 933 233 316 0 13 chr6 45735340 45735417 -103781620 - ID4 SINE ID -4 79 4 3 933 255 103 0 0 chr6 45735465 45735504 -103781533 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 933 1087 68 7 7 chr6 45736506 45736653 -103780384 + B1_Mus2 SINE Alu 1 147 0 3 933 320 59 20 0 chr6 45736654 45736705 -103780332 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 3 933 180 0 0 0 chr6 45736988 45737008 -103780029 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 3 933 233 282 104 28 chr6 45737660 45737766 -103779271 - MER102b DNA MER1_type -224 117 4 3 933 507 33 0 0 chr6 45738170 45738231 -103778806 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 933 396 0 0 0 chr6 45738231 45738274 -103778763 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 933 450 0 0 0 chr6 45738275 45738325 -103778712 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 933 336 77 0 0 chr6 45738675 45738727 -103778310 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 3 933 2163 124 14 96 chr6 45739740 45740158 -103776879 - Lx LINE L1 -4 6650 6267 3 933 184 364 14 28 chr6 45740285 45740429 -103776608 + L2 LINE L2 1974 2115 -1304 3 933 753 189 101 0 chr6 45740489 45740648 -103776389 - URR1A DNA MER1_type 0 226 52 3 933 2010 196 71 65 chr6 45740990 45741514 -103775523 + RMER4B LTR ERVK 1 527 -58 3 933 275 150 0 16 chr6 45742432 45742493 -103774544 + CT-rich Low_complexity Low_complexity 6 65 0 3 934 237 323 64 57 chr6 45744915 45745056 -103771981 - MamGypLTR2 LTR Gypsy -14 1175 1034 3 934 22 0 0 0 chr6 45745561 45745583 -103771454 + AT_rich Low_complexity Low_complexity 1 22 0 3 934 234 218 198 9 chr6 45745630 45745741 -103771296 + L2 LINE L2 2325 2456 -963 3 934 490 311 5 80 chr6 45745858 45746057 -103770980 + B3A SINE B2 1 184 -14 3 934 286 311 43 58 chr6 45747076 45747284 -103769753 - LTR81A LTR ERV1? -968 382 178 3 934 21 0 0 0 chr6 45747428 45747449 -103769588 + AT_rich Low_complexity Low_complexity 1 21 0 3 934 979 304 80 69 chr6 45748358 45749275 -103767762 - L1MA6 LINE L1 -57 6243 5358 3 934 517 201 6 142 chr6 45749295 45749457 -103767580 - RLTR40 LTR ERVK -606 211 72 3 934 369 0 0 0 chr6 45749517 45749558 -103767479 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 3 934 29 28 0 0 chr6 45749981 45750017 -103767020 + AT_rich Low_complexity Low_complexity 1 36 0 3 934 359 316 52 17 chr6 45750022 45750138 -103766899 - PB1D9 SINE Alu 0 120 1 3 934 282 363 22 0 chr6 45750067 45750158 -103766879 - ID_B1 SINE B4 -72 152 60 3 934 843 20 0 0 chr6 45750756 45750857 -103766180 + (TG)n Simple_repeat Simple_repeat 2 102 0 3 934 23 0 0 0 chr6 45750942 45750965 -103766072 + AT_rich Low_complexity Low_complexity 1 23 0 3 934 552 294 99 20 chr6 45751217 45751446 -103765591 + MIRb SINE MIR 3 254 -14 3 934 213 357 48 0 chr6 45751643 45751769 -103765268 - B1F SINE Alu -5 144 13 3 934 429 20 0 0 chr6 45751811 45751861 -103765176 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 934 333 381 99 21 chr6 45751872 45752014 -103765023 - RSINE1 SINE B4 -2 163 11 3 934 180 111 0 0 chr6 45752064 45752091 -103764946 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 934 207 365 87 7 chr6 45752325 45752474 -103764563 + MER5A DNA MER1_type 4 164 -25 3 934 1578 147 4 16 chr6 45752852 45753107 -103763930 - ORR1A2 LTR MaLR -75 252 1 3 934 1013 99 28 0 chr6 45753415 45753557 -103763480 + B1_Mus1 SINE Alu 3 148 0 3 934 668 169 8 0 chr6 45753560 45753690 -103763347 + GA-rich Low_complexity Low_complexity 2 132 0 3 934 21 0 0 0 chr6 45753826 45753847 -103763190 + AT_rich Low_complexity Low_complexity 1 21 0 3 934 2669 43 3 0 chr6 45755487 45755815 -103761222 - L1Md_F2 LINE L1 -2 6580 6252 3 934 1107 59 13 0 chr6 45756797 45756949 -103760088 - L1Md_F3 LINE L1 -3 6581 6428 3 934 744 290 5 16 chr6 45757338 45757527 -103759510 + MTD LTR MaLR 1 187 -232 3 934 980 129 0 26 chr6 45757527 45757678 -103759359 + B1_Mus1 SINE Alu 2 148 0 3 934 462 200 0 0 chr6 45757687 45757699 -103759338 + polypurine Low_complexity Low_complexity 3 14 0 3 934 1377 28 11 6 chr6 45757699 45757878 -103759159 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 934 462 200 0 0 chr6 45757878 45757965 -103759072 + GA-rich Low_complexity Low_complexity 15 101 0 3 934 752 218 0 0 chr6 45757983 45758125 -103758912 + MTD LTR MaLR 193 334 -85 3 934 871 299 106 95 chr6 45758996 45759524 -103757513 + RMER5 LTR ERV1 1 534 0 3 934 189 132 0 50 chr6 45759690 45759730 -103757307 - L3 LINE CR1 -1735 2754 2717 3 934 331 331 56 6 chr6 45761619 45761780 -103755257 - HAL1 LINE L1 -2060 447 279 3 934 25 31 0 0 chr6 45762316 45762348 -103754689 + AT_rich Low_complexity Low_complexity 1 32 0 3 934 713 103 8 0 chr6 45764737 45764854 -103752183 + (TG)n Simple_repeat Simple_repeat 1 118 0 3 934 22 0 0 0 chr6 45765307 45765329 -103751708 + AT_rich Low_complexity Low_complexity 1 22 0 3 934 477 0 0 0 chr6 45765736 45765789 -103751248 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 3 934 24 0 0 0 chr6 45766034 45766058 -103750979 + AT_rich Low_complexity Low_complexity 1 24 0 3 934 251 358 63 18 chr6 45766184 45766295 -103750742 - RMER15 LTR ERVL -129 446 331 3 934 250 289 25 58 chr6 45766408 45766529 -103750508 - RMER15 LTR ERVL -458 117 1 3 934 329 302 114 28 chr6 45766618 45767190 -103749847 - L1M2 LINE L1 -2812 3331 2711 3 934 6770 104 3 13 chr6 45767213 45768226 -103748811 - L1_Mm LINE L1 -1188 4695 3693 3 934 3489 236 83 86 chr6 45768219 45768722 -103748315 + Lx2 LINE L1 5697 6156 -841 3 934 1392 6 0 0 chr6 45768722 45768879 -103748158 + (GAA)n Simple_repeat Simple_repeat 3 159 0 3 934 3489 236 83 86 chr6 45768879 45769679 -103747358 + Lx2 LINE L1 6157 6996 -1 3 934 1511 263 65 14 chr6 45769711 45770019 -103747018 - Lx7 LINE L1 -451 7245 6914 3 934 3300 36 10 0 chr6 45770019 45770411 -103746626 + MTA_Mm LTR MaLR 1 396 0 3 934 1511 263 65 14 chr6 45770411 45770515 -103746522 - Lx7 LINE L1 -783 6913 6812 3 934 6912 168 24 27 chr6 45770514 45772341 -103744696 - L1VL4 LINE L1 -1376 2239 443 3 934 1089 208 19 90 chr6 45772617 45772982 -103744055 - L1_Mur3 LINE L1 -1034 4846 4508 3 934 2464 223 31 12 chr6 45772984 45773634 -103743403 - L1_Mur3 LINE L1 -2761 3119 2458 3 934 7280 118 7 2 chr6 45773625 45775489 -103741548 - L1_Mus3 LINE L1 -7 6631 4757 4 934 608 179 14 21 chr6 45775490 45775633 -103741404 - L1_Mur3 LINE L1 -4095 1785 1644 3 934 1131 83 0 0 chr6 45775608 45775752 -103741285 - L1_Mus1 LINE L1 -138 6429 6286 4 934 703 75 0 27 chr6 45775752 45775862 -103741175 + L1Md_F2 LINE L1 6463 6569 -13 4 934 3429 229 57 28 chr6 45775871 45777199 -103739838 - L1_Mur3 LINE L1 -4205 1675 306 3 934 327 309 92 29 chr6 45777199 45777372 -103739665 - L1M2 LINE L1 -3753 2390 2207 3 934 219 301 136 35 chr6 45778364 45778533 -103738504 + MIR SINE MIR 77 262 0 4 934 23 0 0 0 chr6 45778662 45778685 -103738352 + AT_rich Low_complexity Low_complexity 1 23 0 4 934 270 0 0 0 chr6 45780269 45780299 -103736738 + (A)n Simple_repeat Simple_repeat 1 30 0 4 934 288 0 0 0 chr6 45781521 45781553 -103735484 + (A)n Simple_repeat Simple_repeat 1 32 0 4 934 291 114 0 0 chr6 45781855 45781899 -103735138 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 934 297 109 0 0 chr6 45781953 45782008 -103735029 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 4 934 327 65 0 0 chr6 45782029 45782075 -103734962 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 934 305 288 15 36 chr6 45782550 45782687 -103734350 + A-rich Low_complexity Low_complexity 3 136 0 4 934 210 230 0 14 chr6 45783207 45783278 -103733759 + L2a LINE L2 3318 3424 -2 4 934 36242 51 5 6 chr6 45783541 45788826 -103728211 + L1Md_T LINE L1 308 5586 -297 4 934 8056 52 0 0 chr6 45788827 45789822 -103727215 + L1Md_T LINE L1 5588 6582 0 4 934 489 322 125 23 chr6 45791399 45791663 -103725374 + B4 SINE B4 2 292 0 4 934 200 203 0 33 chr6 45793534 45793595 -103723442 + (TAAA)n Simple_repeat Simple_repeat 4 62 0 4 934 1606 98 15 19 chr6 45794417 45794677 -103722360 + L1Md_F2 LINE L1 6324 6582 0 4 934 340 280 77 48 chr6 45794849 45795008 -103722029 - MER58A DNA MER1_type -2110 310 30 4 934 1059 290 65 14 chr6 45795029 45795319 -103721718 + MTEa LTR MaLR 75 379 0 4 934 363 106 0 0 chr6 45795877 45795943 -103721094 + (T)n Simple_repeat Simple_repeat 1 66 0 4 934 1163 68 0 0 chr6 45795943 45796089 -103720948 - B1_Mus2 SINE Alu 0 147 2 4 934 349 234 7 21 chr6 45796383 45796527 -103720510 + (TA)n Simple_repeat Simple_repeat 2 143 0 4 934 766 228 110 11 chr6 45796532 45796723 -103720314 - B3 SINE B2 0 216 7 4 934 693 286 43 17 chr6 45797632 45797863 -103719174 + Lx8 LINE L1 6764 7000 -473 4 934 29 60 0 0 chr6 45798192 45798242 -103718795 + AT_rich Low_complexity Low_complexity 1 50 0 4 934 424 285 163 0 chr6 45798479 45798602 -103718435 + B1_Mur1 SINE Alu 1 143 -6 4 934 313 301 93 29 chr6 45798662 45798802 -103718235 - MER3 DNA MER1_type -33 176 28 4 934 216 297 149 0 chr6 45799082 45799156 -103717881 + PB1 SINE Alu 22 106 -21 4 934 1202 275 128 13 chr6 45799872 45800248 -103716789 - MTD LTR MaLR 0 419 1 4 934 22 35 0 0 chr6 45800681 45800710 -103716327 + AT_rich Low_complexity Low_complexity 1 29 0 4 934 383 219 63 54 chr6 45800780 45800891 -103716146 + RMER20B LTR ERVK 39 150 -477 4 934 601 241 210 9 chr6 45801039 45801253 -103715784 + RMER20B LTR ERVK 147 403 -224 4 934 1066 276 58 60 chr6 45801392 45801878 -103715159 - Lx9 LINE L1 -179 7465 6981 4 934 624 348 53 14 chr6 45802058 45802265 -103714772 - B4A SINE B4 -20 272 58 4 934 1527 248 145 103 chr6 45804058 45804746 -103712291 + RMER6D LTR ERVK 4 720 0 4 934 2293 64 0 107 chr6 45805281 45805666 -103711371 - L1Md_A LINE L1 -5393 1331 988 4 934 1824 46 0 0 chr6 45805663 45805879 -103711158 + L1Md_F3 LINE L1 5371 5586 -297 4 934 8105 44 1 1 chr6 45805879 45806877 -103710160 + L1Md_F3 LINE L1 5587 6584 0 4 934 8043 29 0 0 chr6 45807439 45808375 -103708662 + L1Md_A LINE L1 5646 6581 -1 4 934 356 355 1 23 chr6 45808605 45808740 -103708297 + B4 SINE B4 4 134 -158 4 934 296 89 0 35 chr6 45808885 45808943 -103708094 + (CCCA)n Simple_repeat Simple_repeat 3 58 0 4 934 302 192 0 0 chr6 45808944 45808996 -103708041 + HAL1-3A_ME LINE L1 1978 2029 -829 4 934 219 36 0 0 chr6 45809065 45809093 -103707944 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 4 934 587 264 21 130 chr6 45809635 45809827 -103707210 + B3 SINE B2 41 211 -5 4 934 21 36 0 0 chr6 45809877 45809905 -103707132 + AT_rich Low_complexity Low_complexity 1 28 0 4 934 185 218 81 103 chr6 45810908 45810995 -103706042 + L3 LINE CR1 4276 4360 -129 4 934 4931 50 0 0 chr6 45811264 45811864 -103705173 + L1Md_F2 LINE L1 5981 6580 -2 4 934 22 0 0 0 chr6 45811989 45812011 -103705026 + AT_rich Low_complexity Low_complexity 1 22 0 4 934 29427 99 41 24 chr6 45812088 45817036 -103700001 - Lx3_Mus LINE L1 -8 7001 1911 4 934 576 77 0 0 chr6 45817036 45817114 -103699923 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 4 934 29427 133 71 14 chr6 45817114 45818424 -103698613 - Lx3_Mus LINE L1 -3976 1910 219 4 934 433 302 35 14 chr6 45818667 45818808 -103698229 + Lx6 LINE L1 7212 7355 -105 4 934 521 331 106 77 chr6 45819075 45819517 -103697520 - RMER13A LTR ERVK -391 469 15 4 934 390 250 17 8 chr6 45819531 45819648 -103697389 + Lx6 LINE L1 7343 7460 0 4 934 214 319 0 0 chr6 45820283 45820355 -103696682 + B3A SINE B2 5 76 -122 4 934 1143 289 9 69 chr6 45820931 45821244 -103695793 + MTE2a LTR MaLR 58 355 -24 4 934 215 31 31 0 chr6 45821244 45821276 -103695761 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 934 1143 289 9 69 chr6 45821276 45821297 -103695740 + MTE2a LTR MaLR 356 372 -7 4 934 472 313 80 25 chr6 45822422 45822622 -103694415 - ID_B1 SINE B4 -12 212 2 4 934 243 0 0 0 chr6 45823296 45823323 -103693714 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 934 276 30 0 0 chr6 45823323 45823355 -103693682 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 934 322 0 86 0 chr6 45823355 45823412 -103693625 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 934 411 266 14 101 chr6 45824413 45824551 -103692486 - RSINE1 SINE B4 -27 138 13 4 934 443 18 0 18 chr6 45824597 45824654 -103692383 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 934 210 184 80 20 chr6 45824671 45824721 -103692316 - ID4 SINE ID -13 70 18 4 934 612 59 0 0 chr6 45825806 45825891 -103691146 + (CA)n Simple_repeat Simple_repeat 1 85 0 4 934 1480 338 43 63 chr6 45825904 45826171 -103690866 - Lx9 LINE L1 -203 7441 7185 4 934 293 0 0 26 chr6 45826171 45826209 -103690828 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 934 1480 338 43 63 chr6 45826209 45826736 -103690301 - Lx9 LINE L1 -460 7184 6648 4 934 1587 101 42 19 chr6 45826736 45826998 -103690039 - Lx2 LINE L1 0 6997 6730 4 934 1480 338 43 63 chr6 45826998 45827028 -103690009 - Lx9 LINE L1 -997 6647 6634 4 934 3800 86 21 58 chr6 45827028 45827597 -103689440 - L1_Mus2 LINE L1 -6 6560 6013 4 934 1480 338 43 63 chr6 45827597 45827657 -103689380 - Lx9 LINE L1 -1011 6633 6573 4 934 229 250 0 0 chr6 45827899 45827947 -103689090 + CT-rich Low_complexity Low_complexity 2 49 0 4 934 235 293 121 65 chr6 45828157 45828281 -103688756 - RSINE1 SINE B4 -31 134 4 4 934 258 81 0 0 chr6 45828623 45828660 -103688377 + (TTA)n Simple_repeat Simple_repeat 2 38 0 4 934 3687 59 0 0 chr6 45828834 45829294 -103687743 + L1Md_F2 LINE L1 6111 6570 -12 4 934 411 21 0 0 chr6 45830397 45830445 -103686592 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 934 43 20 0 0 chr6 45830622 45830672 -103686365 + AT_rich Low_complexity Low_complexity 1 50 0 4 934 414 257 263 0 chr6 45830725 45830896 -103686141 - B3 SINE B2 0 216 1 4 934 1755 152 17 0 chr6 45831992 45832289 -103684748 - Lx2B LINE L1 -989 6011 5710 4 934 1073 173 5 5 chr6 45832291 45832500 -103684537 + Lx2B LINE L1 6774 6982 -18 4 934 568 278 73 58 chr6 45833140 45833331 -103683706 + B3 SINE B2 4 197 -19 4 934 28 0 0 0 chr6 45833746 45833774 -103683263 + AT_rich Low_complexity Low_complexity 1 28 0 4 934 363 95 40 0 chr6 45833832 45833906 -103683131 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 934 27 0 0 0 chr6 45833937 45833964 -103683073 + AT_rich Low_complexity Low_complexity 1 27 0 4 934 596 281 22 38 chr6 45834017 45834202 -103682835 - B3A SINE B2 -16 182 1 4 934 776 275 73 146 chr6 45834389 45834841 -103682196 - RLTR23 LTR ERV1 -4 426 8 4 934 725 302 54 40 chr6 45834857 45835154 -103681883 - RMER5 LTR ERV1 -20 514 214 4 934 577 277 98 93 chr6 45835516 45835700 -103681337 - B3A SINE B2 -7 186 2 4 934 434 292 75 14 chr6 45836355 45836501 -103680536 + B3 SINE B2 49 203 -13 4 934 2953 151 26 15 chr6 45836675 45837206 -103679831 - Lx2 LINE L1 -1 6996 6460 4 934 21 0 0 0 chr6 45837432 45837453 -103679584 + AT_rich Low_complexity Low_complexity 1 21 0 4 934 516 327 114 84 chr6 45837921 45838315 -103678722 - MER34A LTR ERV1 -165 406 1 4 934 320 168 19 19 chr6 45838364 45838467 -103678570 + (TA)n Simple_repeat Simple_repeat 2 104 0 4 934 21 57 0 0 chr6 45839550 45839585 -103677452 + AT_rich Low_complexity Low_complexity 1 35 0 4 934 300 357 27 0 chr6 45839802 45839914 -103677123 - PB1D10 SINE Alu -1 116 2 4 934 225 204 0 0 chr6 45839939 45839983 -103677054 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 4 934 464 320 0 8 chr6 45840001 45840127 -103676910 - RSINE1 SINE B4 -38 127 3 4 934 320 68 0 0 chr6 45840140 45840184 -103676853 - B4A SINE B4 -164 128 85 4 934 540 0 0 0 chr6 45840869 45840929 -103676108 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 934 367 317 99 0 chr6 45840933 45841034 -103676003 + B3 SINE B2 91 201 -15 4 934 207 0 0 0 chr6 45841265 45841288 -103675749 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 4 934 391 303 0 52 chr6 45841288 45841403 -103675634 - ID_B1 SINE B4 -12 212 104 4 934 234 284 103 62 chr6 45841439 45841453 -103675584 - Lx5 LINE L1 0 6976 6966 4 934 551 28 28 0 chr6 45841453 45841525 -103675512 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 4 934 327 25 0 0 chr6 45841525 45841564 -103675473 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 4 934 1168 198 20 24 chr6 45841564 45841829 -103675208 - Lx5 LINE L1 -55 6995 6756 4 934 3410 222 67 26 chr6 45841865 45842783 -103674254 + Lx3C LINE L1 6038 7007 -1 4 934 2815 241 34 28 chr6 45843026 45843768 -103673269 - RLTR22_Mur LTR ERVK -1099 749 4 4 934 512 15 0 15 chr6 45843795 45843861 -103673176 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 934 240 184 0 0 chr6 45843854 45843903 -103673134 + (CCTG)n Simple_repeat Simple_repeat 2 50 0 5 934 1380 157 7 37 chr6 45843916 45844047 -103672990 - Lx4B LINE L1 -295 6763 6637 5 934 1908 118 94 0 chr6 45844047 45844344 -103672693 - ORR1A2 LTR MaLR -2 325 1 5 934 1380 157 7 37 chr6 45844344 45844483 -103672554 - Lx4B LINE L1 -422 6636 6501 5 934 349 205 45 28 chr6 45845886 45846138 -103670899 + (TA)n Simple_repeat Simple_repeat 1 256 0 5 934 261 180 0 0 chr6 45846284 45846334 -103670703 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 934 23 33 0 0 chr6 45846607 45846637 -103670400 + AT_rich Low_complexity Low_complexity 1 30 0 5 934 763 261 59 15 chr6 45847059 45847261 -103669776 + B3 SINE B2 1 211 -5 5 934 191 36 36 0 chr6 45849674 45849702 -103667335 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 5 934 630 0 0 0 chr6 45849752 45849822 -103667215 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 934 38 22 0 0 chr6 45850289 45850334 -103666703 + AT_rich Low_complexity Low_complexity 1 45 0 5 934 4006 217 90 32 chr6 45850490 45851456 -103665581 - RMER1B Other Other -1 1065 44 5 934 734 309 19 37 chr6 45851764 45851979 -103665058 + B3 SINE B2 6 216 0 5 934 473 92 0 13 chr6 45852308 45852385 -103664652 + (TATG)n Simple_repeat Simple_repeat 4 79 0 5 934 620 245 34 20 chr6 45852391 45852537 -103664500 - B3 SINE B2 -68 148 1 5 934 580 336 0 0 chr6 45853119 45853265 -103663772 + B1_Mur2 SINE Alu 4 149 0 5 934 450 0 0 0 chr6 45853849 45853899 -103663138 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 934 21 0 0 0 chr6 45854134 45854155 -103662882 + AT_rich Low_complexity Low_complexity 1 21 0 5 934 572 237 0 12 chr6 45854299 45854386 -103662651 + polypurine Low_complexity Low_complexity 4 90 0 5 934 711 0 0 0 chr6 45854386 45854465 -103662572 + (GGAAA)n Simple_repeat Simple_repeat 2 80 0 5 934 950 121 0 6 chr6 45854468 45854626 -103662411 + (GGAA)n Simple_repeat Simple_repeat 3 159 0 5 934 572 237 0 12 chr6 45854626 45854705 -103662332 + polypurine Low_complexity Low_complexity 91 168 0 5 934 857 286 36 40 chr6 45854705 45854956 -103662081 + B4A SINE B4 43 292 0 5 934 2111 182 85 11 chr6 45855794 45856228 -103660809 - RLTR11A2 LTR ERVK 0 527 62 5 934 337 221 0 19 chr6 45856470 45856576 -103660461 + (TA)n Simple_repeat Simple_repeat 2 105 0 5 934 26 0 0 0 chr6 45857317 45857343 -103659694 + AT_rich Low_complexity Low_complexity 1 26 0 5 934 263 180 63 213 chr6 45857437 45857564 -103659473 - Lx8 LINE L1 -83 7390 7283 5 934 356 381 67 12 chr6 45858242 45858497 -103658540 - L1MD1 LINE L1 0 6242 5974 5 934 360 239 109 0 chr6 45859023 45859108 -103657929 + MTD LTR MaLR 3 97 -322 5 934 1100 97 7 0 chr6 45859108 45859253 -103657784 + B1_Mus2 SINE Alu 1 146 -1 5 934 221 75 25 0 chr6 45859264 45859304 -103657733 + (CAA)n Simple_repeat Simple_repeat 2 42 0 5 934 1050 236 141 42 chr6 45859325 45859631 -103657406 + MTD LTR MaLR 84 419 0 5 934 408 40 0 0 chr6 45859975 45860025 -103657012 + (TAA)n Simple_repeat Simple_repeat 3 52 0 5 934 187 85 19 113 chr6 45860440 45860493 -103656544 + L4 LINE RTE 745 792 -1237 5 934 226 280 34 101 chr6 45861385 45861504 -103655533 + Charlie6 DNA MER1_type 2421 2531 -969 5 934 5441 126 2 33 chr6 45862560 45863448 -103653589 + Lx LINE L1 5787 6647 -7 5 934 22 0 0 0 chr6 45863894 45863916 -103653121 + AT_rich Low_complexity Low_complexity 1 22 0 5 934 23 0 0 0 chr6 45863947 45863970 -103653067 + AT_rich Low_complexity Low_complexity 1 23 0 5 934 380 311 108 57 chr6 45864328 45864522 -103652515 + B3 SINE B2 7 210 -6 5 934 495 0 0 0 chr6 45865623 45865678 -103651359 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 934 22 0 0 0 chr6 45866169 45866191 -103650846 + AT_rich Low_complexity Low_complexity 1 22 0 5 934 230 279 57 29 chr6 45867810 45867880 -103649157 + tRNA-Ala-GCY_ tRNA tRNA 4 75 0 5 934 224 272 51 64 chr6 45867880 45867896 -103649141 + ID4 SINE ID 33 94 -58 5 934 23 33 0 0 chr6 45868464 45868494 -103648543 + AT_rich Low_complexity Low_complexity 1 30 0 5 934 23 68 0 0 chr6 45869289 45869333 -103647704 + AT_rich Low_complexity Low_complexity 1 44 0 5 934 796 210 60 71 chr6 45869478 45869760 -103647277 + Lx7 LINE L1 7417 7695 -1 5 934 454 361 84 4 chr6 45870353 45870603 -103646434 - B4A SINE B4 -14 278 9 5 934 279 0 0 0 chr6 45871016 45871047 -103645990 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 934 464 282 0 61 chr6 45871163 45871295 -103645742 + ID_B1 SINE B4 93 216 -8 5 934 426 94 0 0 chr6 45871555 45871619 -103645418 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 934 439 291 51 0 chr6 45871633 45871750 -103645287 - RSINE1 SINE B4 -42 123 1 5 934 516 325 97 42 chr6 45871953 45872261 -103644776 - MER44A DNA MER2_type -11 328 4 5 934 222 167 0 23 chr6 45872977 45873020 -103644017 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 934 250 324 57 29 chr6 45873616 45873721 -103643316 + RMER15 LTR ERVL 452 559 -16 5 934 483 18 0 0 chr6 45873754 45873810 -103643227 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 935 910 131 21 0 chr6 45875385 45875530 -103641507 + Lx2 LINE L1 6496 6643 -354 5 935 1177 197 0 0 chr6 45875530 45875753 -103641284 + Lx2 LINE L1 6775 6997 0 5 935 570 63 0 0 chr6 45875830 45875909 -103641128 + (TTTC)n Simple_repeat Simple_repeat 1 79 0 5 935 597 104 255 0 chr6 45875909 45876015 -103641022 - B1_Mm SINE Alu -12 135 3 5 935 425 212 156 7 chr6 45876015 45876220 -103640817 + L1_Mur3 LINE L1 3078 3319 -2824 5 935 633 214 7 71 chr6 45876225 45876366 -103640671 + B1_Mur3 SINE Alu 10 141 -8 5 935 312 178 0 0 chr6 45876377 45876450 -103640587 + A-rich Low_complexity Low_complexity 1 73 0 5 935 6333 82 25 11 chr6 45876450 45877581 -103639456 - Lx3_Mus LINE L1 -489 6520 5374 5 935 2666 119 106 11 chr6 45877581 45878024 -103639013 + Lx3_Mus LINE L1 6525 7009 0 5 935 816 230 24 5 chr6 45878074 45878279 -103638758 + Lx7 LINE L1 7488 7696 0 5 935 200 35 35 0 chr6 45878353 45878382 -103638655 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 5 935 301 22 43 0 chr6 45878489 45878535 -103638502 + (CAA)n Simple_repeat Simple_repeat 2 49 0 5 935 23 68 0 0 chr6 45878767 45878811 -103638226 + AT_rich Low_complexity Low_complexity 1 44 0 5 935 4958 61 3 0 chr6 45880201 45880837 -103636200 + L1Md_F2 LINE L1 5945 6582 0 5 935 346 293 219 34 chr6 45882099 45882336 -103634701 + Lx8 LINE L1 7166 7446 -27 5 935 261 57 0 0 chr6 45882348 45882383 -103634654 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 935 414 0 0 0 chr6 45882383 45882428 -103634609 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 935 16443 157 41 16 chr6 45882719 45885254 -103631783 + L1VL2 LINE L1 395 3006 -2877 5 935 207 0 0 0 chr6 45885254 45885277 -103631760 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 935 16443 172 8 22 chr6 45885277 45886778 -103630259 + L1VL2 LINE L1 3007 4467 -1416 5 935 1182 128 8 68 chr6 45886778 45887029 -103630008 + Lx LINE L1 6419 6654 0 5 935 489 76 0 0 chr6 45887358 45887424 -103629613 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 935 23 78 0 0 chr6 45889806 45889857 -103627180 + AT_rich Low_complexity Low_complexity 1 51 0 5 935 351 0 0 0 chr6 45890213 45890252 -103626785 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 5 935 282 302 77 8 chr6 45890252 45890369 -103626668 - LTR53 LTR ERVL -394 125 1 5 935 23 54 0 0 chr6 45891412 45891449 -103625588 + AT_rich Low_complexity Low_complexity 1 37 0 5 935 398 337 40 60 chr6 45891545 45891744 -103625293 - MER20 DNA MER1_type 0 219 25 5 935 549 301 44 55 chr6 45891992 45892175 -103624862 + B3 SINE B2 6 186 -30 5 935 512 317 147 47 chr6 45893463 45893721 -103623316 + B4A SINE B4 3 286 -6 5 935 253 325 49 74 chr6 45893728 45893891 -103623146 + L1MB1 LINE L1 5887 6045 -123 5 935 348 284 124 41 chr6 45894074 45894195 -103622842 + B4 SINE B4 1 131 -161 5 935 620 285 7 0 chr6 45894299 45894436 -103622601 + B4 SINE B4 137 274 -18 5 935 25 31 0 0 chr6 45894883 45894915 -103622122 + AT_rich Low_complexity Low_complexity 1 32 0 5 935 352 372 98 21 chr6 45895411 45895647 -103621390 + MIRb SINE MIR 15 268 0 5 935 4558 110 13 23 chr6 45895669 45896367 -103620670 + L1_Mus4 LINE L1 5945 6635 -1 5 935 333 262 65 93 chr6 45896549 45896688 -103620349 + B1F1 SINE Alu 10 144 -5 5 935 243 333 0 0 chr6 45896715 45896775 -103620262 + ID4_ SINE ID 16 75 -8 5 935 284 306 18 138 chr6 45896917 45897084 -103619953 + RSINE1 SINE B4 4 150 -15 5 935 544 294 96 93 chr6 45898504 45898857 -103618180 - ORR1E LTR MaLR -5 354 1 5 935 186 71 0 0 chr6 45899081 45899109 -103617928 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 935 291 316 23 19 chr6 45899609 45899752 -103617285 + Charlie5 DNA MER1_type 7 144 -2480 5 935 425 189 0 10 chr6 45900260 45900274 -103616763 + polypyrimidine Low_complexity Low_complexity 85 98 0 5 935 1285 56 0 27 chr6 45900274 45900459 -103616578 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 935 425 189 0 10 chr6 45900459 45900540 -103616497 + CT-rich Low_complexity Low_complexity 4 84 0 5 935 600 125 0 0 chr6 45901012 45901108 -103615929 + (TG)n Simple_repeat Simple_repeat 2 97 0 5 935 303 286 0 6 chr6 45902085 45902187 -103614850 + Lx7 LINE L1 5629 5762 -538 5 935 477 34 0 0 chr6 45902197 45902256 -103614781 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 935 284 120 20 0 chr6 45902256 45902306 -103614731 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 935 225 324 9 0 chr6 45902306 45902417 -103614620 + L1_Rod LINE L1 5727 5838 -9 5 935 217 229 32 16 chr6 45902472 45902534 -103614503 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 5 935 1947 179 81 0 chr6 45902602 45902960 -103614077 + ORR1B1 LTR MaLR 8 394 0 6 935 369 332 120 19 chr6 45902990 45903199 -103613838 - MT2A LTR ERVL -3 530 301 6 935 3807 217 77 31 chr6 45903209 45904179 -103612858 - RLTR13D2 LTR ERVK -8 1015 1 6 935 479 290 25 86 chr6 45904264 45904429 -103612608 - MT2A LTR ERVL -295 238 82 6 935 207 69 0 0 chr6 45904429 45904458 -103612579 + (CTAAT)n Simple_repeat Simple_repeat 5 33 0 6 935 479 290 25 86 chr6 45904458 45904537 -103612500 - MT2A LTR ERVL -452 81 9 6 935 195 162 0 0 chr6 45904691 45904728 -103612309 + GA-rich Low_complexity Low_complexity 5 41 0 6 935 789 87 0 0 chr6 45904731 45904846 -103612191 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 6 935 1298 213 110 10 chr6 45905833 45906132 -103610905 + ORR1A4 LTR MaLR 1 329 0 6 935 681 188 14 14 chr6 45906132 45906272 -103610765 + ORR1A4-int LTR MaLR 1 140 -1823 6 935 5493 114 43 1 chr6 45906273 45907092 -103609945 + Lx LINE L1 5709 6561 -93 6 935 5303 224 87 79 chr6 45907093 45908983 -103608054 + ORR1A4-int LTR MaLR 59 1963 0 6 935 1454 203 0 65 chr6 45908983 45909293 -103607744 + ORR1A4 LTR MaLR 1 290 -39 6 935 1177 62 0 0 chr6 45909293 45909438 -103607599 + B1_Mm SINE Alu 3 147 0 6 935 342 83 27 14 chr6 45909438 45909511 -103607526 + (CAAAAA)n Simple_repeat Simple_repeat 4 77 0 6 935 311 164 18 0 chr6 45909511 45909566 -103607471 + ORR1A4 LTR MaLR 274 329 0 6 935 197 284 53 13 chr6 45909727 45909802 -103607235 - L2 LINE L2 -1343 2076 1999 6 935 816 263 143 4 chr6 45910445 45910682 -103606355 + B4 SINE B4 18 287 -5 6 935 186 43 0 0 chr6 45910799 45910822 -103606215 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 935 407 331 58 89 chr6 45911631 45911923 -103605114 - Lx8 LINE L1 -84 7389 7107 6 935 21 0 0 0 chr6 45912503 45912524 -103604513 + AT_rich Low_complexity Low_complexity 1 21 0 6 935 425 308 100 26 chr6 45913468 45913658 -103603379 + MIRc SINE MIR 63 266 -2 6 935 505 309 30 35 chr6 45913992 45914190 -103602847 - B3A SINE B2 -1 197 1 6 935 21 0 0 0 chr6 45914765 45914786 -103602251 + AT_rich Low_complexity Low_complexity 1 21 0 6 935 666 95 0 0 chr6 45914934 45915029 -103602008 + (CA)n Simple_repeat Simple_repeat 2 96 0 6 935 224 347 41 36 chr6 45915185 45915385 -103601652 - MIR SINE MIR -46 222 24 6 935 528 296 108 32 chr6 45916514 45916793 -103600244 - RMER15 LTR ERVL -2 573 274 6 935 249 275 49 24 chr6 45917235 45917317 -103599720 - B1F SINE Alu -52 97 14 6 935 414 0 0 0 chr6 45917577 45917623 -103599414 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 935 516 217 186 8 chr6 45917644 45917880 -103599157 + Lx9 LINE L1 7361 7638 -6 6 935 1172 75 0 0 chr6 45919032 45919178 -103597859 - B1_Mm SINE Alu 0 147 2 6 935 1278 144 38 17 chr6 45920280 45920520 -103596517 + Lx LINE L1 6410 6654 0 6 935 254 270 67 11 chr6 45920754 45920844 -103596193 - MTEa LTR MaLR 0 379 285 6 935 2805 74 8 20 chr6 45920955 45921354 -103595683 + MTA_Mm LTR MaLR 1 394 -2 6 935 7818 86 14 1 chr6 45922344 45923787 -103593250 - L1_Mus3 LINE L1 0 6638 5180 6 935 603 39 0 0 chr6 45925231 45925309 -103591728 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 935 222 91 0 0 chr6 45925312 45925345 -103591692 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 935 22 70 0 0 chr6 45925526 45925569 -103591468 + AT_rich Low_complexity Low_complexity 1 43 0 6 935 861 306 89 32 chr6 45925673 45926020 -103591017 - MTE2a LTR MaLR -2 377 11 6 935 419 337 139 27 chr6 45927772 45928217 -103588820 + MER82 DNA MER2_type 10 504 -149 6 935 284 350 100 17 chr6 45928504 45928684 -103588353 - MLT1A0 LTR MaLR -166 199 5 6 935 567 275 25 18 chr6 45928699 45928862 -103588175 - MLT1A0-int LTR MaLR -17 1718 1555 6 935 39 50 0 0 chr6 45929935 45929995 -103587042 + AT_rich Low_complexity Low_complexity 1 60 0 6 935 278 289 42 29 chr6 45930003 45930124 -103586913 - B4A SINE B4 -39 126 3 6 935 183 42 0 0 chr6 45931956 45931980 -103585057 + (A)n Simple_repeat Simple_repeat 1 24 0 6 935 459 296 0 0 chr6 45931993 45932091 -103584946 + RMER19B LTR ERVK 1 98 -804 6 935 23 0 0 0 chr6 45932117 45932140 -103584897 + AT_rich Low_complexity Low_complexity 1 23 0 6 935 279 0 0 0 chr6 45932147 45932178 -103584859 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 935 979 87 0 0 chr6 45932186 45932312 -103584725 + L1Md_F2 LINE L1 5461 5586 -297 6 935 7392 57 24 17 chr6 45932312 45933299 -103583738 + L1Md_F2 LINE L1 5587 6580 -2 6 935 3586 226 61 42 chr6 45933300 45933975 -103583062 + RMER19B LTR ERVK 63 763 -139 6 935 3712 40 0 11 chr6 45933975 45934431 -103582606 + L1Md_F2 LINE L1 6132 6582 0 6 935 3586 226 61 42 chr6 45934431 45934574 -103582463 + RMER19B LTR ERVK 764 897 -5 6 935 430 312 47 73 chr6 45934577 45935258 -103581779 + L1M2 LINE L1 1908 2570 -4279 6 935 1222 330 39 13 chr6 45935581 45936044 -103580993 - MTE-int LTR MaLR -1103 477 3 6 935 183 80 0 0 chr6 45936355 45936380 -103580657 + (CTAAA)n Simple_repeat Simple_repeat 3 27 0 6 935 23 68 0 0 chr6 45936480 45936524 -103580513 + AT_rich Low_complexity Low_complexity 1 44 0 6 935 412 294 115 31 chr6 45937119 45937306 -103579731 + B4A SINE B4 98 290 -2 6 935 588 50 0 0 chr6 45937331 45937411 -103579626 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 935 477 0 0 0 chr6 45937975 45938028 -103579009 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 935 547 275 205 16 chr6 45939623 45939867 -103577170 - B4A SINE B4 -2 290 1 6 935 372 22 0 0 chr6 45940555 45940600 -103576437 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 935 261 0 0 0 chr6 45940600 45940628 -103576409 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 935 210 261 43 0 chr6 45940977 45941046 -103575991 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 935 593 290 126 48 chr6 45941118 45941553 -103575484 + Lx8 LINE L1 6999 7467 -6 6 935 850 265 5 31 chr6 45942130 45942352 -103574685 + B3 SINE B2 1 216 0 6 935 1078 203 5 5 chr6 45943009 45943232 -103573805 + Lx2 LINE L1 6770 6992 -5 6 935 459 0 0 0 chr6 45943407 45943458 -103573579 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 935 803 188 36 6 chr6 45943564 45943730 -103573307 + L1_Mus4 LINE L1 5940 6110 -526 6 935 4317 158 69 1 chr6 45943728 45943868 -103573169 + L1_Mus4 LINE L1 5050 5190 -693 6 935 216 0 0 0 chr6 45943868 45943892 -103573145 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 935 7351 111 31 1 chr6 45943892 45945282 -103571755 + L1_Mus4 LINE L1 5191 6634 -2 6 935 396 0 0 0 chr6 45946611 45946655 -103570382 + (TTA)n Simple_repeat Simple_repeat 1 44 0 6 935 5570 132 17 6 chr6 45946663 45947544 -103569493 - Lx3B LINE L1 -7 6966 6076 6 935 371 109 0 0 chr6 45948446 45948510 -103568527 - Lx3_Mus LINE L1 0 7009 6946 6 935 3146 56 2 2 chr6 45948511 45948904 -103568133 + Lx3_Mus LINE L1 6518 6910 -99 6 935 1200 174 32 0 chr6 45949044 45949262 -103567775 + URR1B DNA MER1_type 1 225 0 6 935 22 0 0 0 chr6 45949849 45949871 -103567166 + AT_rich Low_complexity Low_complexity 1 22 0 6 935 478 288 34 48 chr6 45949911 45950057 -103566980 - RSINE1 SINE B4 -19 146 3 6 935 195 280 0 0 chr6 45950507 45950600 -103566437 + (CATA)n Simple_repeat Simple_repeat 3 95 0 6 935 326 320 0 0 chr6 45950628 45950725 -103566312 + (CATA)n Simple_repeat Simple_repeat 4 100 0 6 935 868 191 113 62 chr6 45951519 45951793 -103565244 - Lx7 LINE L1 0 7696 7409 6 935 198 91 0 0 chr6 45951818 45951851 -103565186 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 935 1543 250 33 14 chr6 45951909 45952270 -103564767 - Lx7 LINE L1 -343 7353 6986 6 935 414 0 0 0 chr6 45952782 45952828 -103564209 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 935 574 136 10 0 chr6 45953807 45953910 -103563127 + Lx9 LINE L1 7533 7636 -8 6 935 180 296 97 73 chr6 45954002 45954126 -103562911 + L3 LINE CR1 2979 3105 -1384 6 935 330 338 62 57 chr6 45954781 45954991 -103562046 - MER63B DNA AcHobo -30 406 196 6 935 1694 21 0 0 chr6 45956652 45956843 -103560194 + L1Md_F3 LINE L1 5396 5586 -297 6 935 8271 38 0 5 chr6 45956843 45957845 -103559192 + L1Md_F3 LINE L1 5587 6583 -1 6 935 546 344 6 24 chr6 45957879 45958046 -103558991 + RSINE1 SINE B4 2 165 0 6 935 21 36 0 0 chr6 45958394 45958422 -103558615 + AT_rich Low_complexity Low_complexity 1 28 0 6 935 295 309 86 67 chr6 45958954 45959221 -103557816 + Charlie19a DNA Charlie 51 322 -64 6 935 2261 193 39 7 chr6 45960677 45961137 -103555900 + Lx3C LINE L1 6502 6976 0 6 935 1434 191 132 12 chr6 45961455 45961633 -103555404 - ORR1C2 LTR MaLR -7 377 168 6 935 927 118 0 0 chr6 45961633 45961786 -103555251 + (GA)n Simple_repeat Simple_repeat 1 153 0 6 935 1434 191 132 12 chr6 45961786 45961940 -103555097 - ORR1C2 LTR MaLR -217 167 6 6 935 338 238 47 23 chr6 45961942 45962114 -103554923 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 6 935 207 100 0 0 chr6 45962276 45962306 -103554731 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 935 690 172 0 0 chr6 45962536 45962664 -103554373 + CT-rich Low_complexity Low_complexity 3 130 0 6 935 7494 120 52 22 chr6 45962675 45963906 -103553131 - Lx3A LINE L1 -1 6980 5713 6 935 22 0 0 0 chr6 45963915 45963937 -103553100 + AT_rich Low_complexity Low_complexity 1 22 0 6 935 1537 43 0 21 chr6 45964140 45964330 -103552707 - B2_Mm1a SINE B2 -6 187 2 6 935 369 0 0 0 chr6 45964826 45964867 -103552170 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 935 414 0 0 0 chr6 45964867 45964912 -103552125 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 935 569 83 12 0 chr6 45965553 45965637 -103551400 + (TC)n Simple_repeat Simple_repeat 2 86 0 6 935 792 139 127 0 chr6 45965845 45966003 -103551034 + URR1A DNA MER1_type 48 225 -1 6 935 346 281 184 32 chr6 45966556 45966714 -103550323 - MTEa LTR MaLR -19 360 179 6 935 709 328 74 27 chr6 45967998 45968255 -103548782 + B4A SINE B4 14 282 -10 6 935 1795 142 7 3 chr6 45968454 45968750 -103548287 + L1_Mus3 LINE L1 4886 5182 -701 6 935 1558 21 0 0 chr6 45968750 45968938 -103548099 + MTA_Mm LTR MaLR 1 188 -208 6 935 2140 146 32 5 chr6 45968941 45969313 -103547724 + L1_Mus3 LINE L1 5149 5530 -353 6 935 6941 82 11 1 chr6 45969311 45970260 -103546777 + L1_Mus3 LINE L1 5679 6636 -2 6 935 29 28 0 0 chr6 45971168 45971204 -103545833 + AT_rich Low_complexity Low_complexity 1 36 0 6 935 354 319 132 7 chr6 45972050 45972186 -103544851 + RSINE1 SINE B4 3 155 -10 6 935 27 29 0 0 chr6 45972195 45972229 -103544808 + AT_rich Low_complexity Low_complexity 1 34 0 6 935 292 333 8 0 chr6 45972232 45972355 -103544682 + Lx9 LINE L1 7350 7473 -171 6 935 2375 170 118 37 chr6 45972956 45973474 -103543563 + RLTR20B2 LTR ERVK 1 560 0 6 935 608 328 19 33 chr6 45974100 45974371 -103542666 - Lx8 LINE L1 -340 7133 6867 7 935 416 326 29 7 chr6 45974370 45974509 -103542528 + Lx8 LINE L1 7184 7325 -148 7 935 191 328 69 0 chr6 45976458 45976516 -103540521 + L2 LINE L2 2501 2562 -857 7 935 195 204 39 39 chr6 45976708 45976759 -103540278 + MIR SINE MIR 5 55 -207 7 935 188 370 50 0 chr6 45976803 45976903 -103540134 - MIR SINE MIR -65 197 93 7 935 488 146 11 0 chr6 45977319 45977408 -103539629 + (TAG)n Simple_repeat Simple_repeat 3 92 0 7 935 242 376 11 23 chr6 45977421 45977508 -103539529 - B3A SINE B2 -26 172 87 7 935 486 0 0 0 chr6 45978567 45978621 -103538416 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 935 432 37 0 0 chr6 45978621 45978674 -103538363 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 935 279 319 64 0 chr6 45979932 45980026 -103537011 + MER20 DNA MER1_type 1 100 -119 7 935 25 51 0 0 chr6 45980750 45980789 -103536248 + AT_rich Low_complexity Low_complexity 1 39 0 7 935 1038 82 0 0 chr6 45981197 45981356 -103535681 + (TG)n Simple_repeat Simple_repeat 1 159 0 7 935 713 346 25 7 chr6 45981388 45981673 -103535364 - B4A SINE B4 -2 290 1 7 935 186 106 42 21 chr6 45983780 45983828 -103533209 + CT-rich Low_complexity Low_complexity 1 49 0 7 935 255 61 0 0 chr6 45984052 45984085 -103532952 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 7 935 240 143 0 0 chr6 45984178 45984234 -103532803 + (T)n Simple_repeat Simple_repeat 1 56 0 7 935 530 204 48 34 chr6 45984234 45984381 -103532656 - RLTR12B LTR ERVK -333 195 47 7 935 230 264 20 71 chr6 45984815 45984913 -103532124 - MLT1A1 LTR MaLR -8 400 308 7 935 258 329 49 35 chr6 45985093 45985235 -103531802 - ORR1E LTR MaLR -215 144 1 7 935 427 334 152 34 chr6 45985557 45985938 -103531099 - L2 LINE L2 -359 3060 2635 7 935 320 94 58 23 chr6 45985938 45986025 -103531012 + (TTATA)n Simple_repeat Simple_repeat 4 93 0 7 935 222 340 55 36 chr6 45986165 45986275 -103530762 - L2 LINE L2 -1370 2049 1938 7 935 224 217 0 0 chr6 45986589 45986635 -103530402 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 935 210 184 20 0 chr6 45986755 45986804 -103530233 + A-rich Low_complexity Low_complexity 3 52 0 7 935 657 302 108 12 chr6 45987458 45987716 -103529321 + MLT1A0 LTR MaLR 48 330 -35 7 935 731 344 19 35 chr6 45987832 45988091 -103528946 + 7SK RNA RNA 71 325 -6 7 935 563 40 14 0 chr6 45988095 45988169 -103528868 + (GA)n Simple_repeat Simple_repeat 2 76 0 7 935 1229 234 55 30 chr6 45988391 45988752 -103528285 + ORR1D1 LTR MaLR 3 372 -2 7 935 1023 254 71 107 chr6 45990083 45990550 -103526487 - RMER4A LTR ERVK 0 466 17 7 935 207 0 0 0 chr6 45991018 45991041 -103525996 + (TTG)n Simple_repeat Simple_repeat 1 23 0 7 935 21 36 0 0 chr6 45991076 45991104 -103525933 + AT_rich Low_complexity Low_complexity 1 28 0 7 935 4777 70 22 18 chr6 45991104 45991774 -103525263 - L1Md_F2 LINE L1 -1 6581 5909 7 935 258 418 32 0 chr6 45992961 45993181 -103523856 - L2c LINE L2 -51 3336 3110 7 935 678 285 59 34 chr6 45993403 45993639 -103523398 + B4A SINE B4 2 243 -49 7 935 282 391 31 8 chr6 45993724 45993853 -103523184 + B4A SINE B4 159 290 -2 7 935 1066 115 47 47 chr6 45994199 45994391 -103522646 + B2_Mm2 SINE B2 1 192 -3 7 935 1232 281 72 70 chr6 45994777 45995191 -103521846 + MTD LTR MaLR 2 416 -3 7 935 707 354 28 69 chr6 45996189 45996480 -103520557 + B4A SINE B4 2 280 -12 7 935 2273 78 0 0 chr6 45996958 45997252 -103519785 - L1_Mus4 LINE L1 -746 5890 5597 7 935 4356 93 0 30 chr6 45997243 45997865 -103519172 + L1_Mus4 LINE L1 5875 6477 -159 7 935 636 143 10 2 chr6 45997860 45997969 -103519068 - L1_Mus4 LINE L1 -304 6332 6242 7 935 2227 208 83 8 chr6 45998838 45998904 -103518133 - RMER19C LTR ERVK 0 611 540 7 935 835 144 6 6 chr6 45998904 45999072 -103517965 + Lx3_Mus LINE L1 6842 7009 0 7 935 2227 208 83 8 chr6 45999072 45999088 -103517949 - RMER19C LTR ERVK -72 539 506 7 935 543 31 0 0 chr6 45999088 45999153 -103517884 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 935 2227 203 61 22 chr6 45999153 45999585 -103517452 - RMER19C LTR ERVK -106 505 1 7 935 1251 264 52 6 chr6 46000131 46000493 -103516544 - MTE2b LTR MaLR 0 379 1 1 935 528 59 0 0 chr6 46001356 46001424 -103515613 + (GAAA)n Simple_repeat Simple_repeat 4 71 0 2 935 936 162 0 0 chr6 46001446 46001613 -103515424 + GA-rich Low_complexity Low_complexity 4 170 0 3 935 365 138 35 0 chr6 46001615 46001673 -103515364 + polypurine Low_complexity Low_complexity 3 62 0 4 935 5966 102 10 1 chr6 46004478 46005349 -103511688 - L1_Mus3 LINE L1 -1 6637 5759 5 935 248 353 91 49 chr6 46005419 46005562 -103511475 + B1F1 SINE Alu 1 149 0 6 935 1139 184 13 5 chr6 46005640 46005864 -103511173 - URR1A DNA MER1_type 0 226 1 7 935 293 229 86 0 chr6 46005931 46006001 -103511036 + B4A SINE B4 1 76 -216 8 116 1842 96 83 74 chr6 46006002 46006352 -103510685 + Lx LINE L1 6301 6653 -1 9 936 423 0 0 0 chr6 46006509 46006556 -103510481 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 936 324 0 0 0 chr6 46006556 46006591 -103510446 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 936 196 344 71 30 chr6 46007104 46007203 -103509834 - L2b LINE L2 -2 3373 3271 1 936 1685 142 29 0 chr6 46008119 46008393 -103508644 - Lx3A LINE L1 0 6981 6700 1 936 192 135 0 0 chr6 46008885 46008922 -103508115 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 936 1934 93 17 41 chr6 46010580 46010871 -103506166 + L1_Mus1 LINE L1 6284 6567 0 1 936 317 277 139 0 chr6 46011377 46011478 -103505559 + PB1D10 SINE Alu 1 115 -2 1 936 183 129 0 0 chr6 46012448 46012479 -103504558 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 1 936 7868 51 1 4 chr6 46012481 46014147 -103502890 - L1Md_F2 LINE L1 -13 6569 4908 1 936 2357 139 39 0 chr6 46014395 46014777 -103502260 - Lx2B LINE L1 0 7000 6604 1 936 34 42 0 0 chr6 46015488 46015536 -103501501 + AT_rich Low_complexity Low_complexity 1 48 0 2 936 258 295 40 117 chr6 46015974 46016247 -103500790 - L1MA7 LINE L1 -348 5943 5692 2 936 872 98 8 0 chr6 46016252 46016385 -103500652 + (TA)n Simple_repeat Simple_repeat 1 134 0 2 936 467 43 0 28 chr6 46016385 46016455 -103500582 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 2 936 599 343 52 19 chr6 46016455 46016764 -103500273 - MT2A LTR ERVL -75 458 140 2 936 1095 269 130 16 chr6 46017069 46017493 -103499544 - Lx8 LINE L1 -178 7295 6824 2 936 25 31 0 0 chr6 46018362 46018394 -103498643 + AT_rich Low_complexity Low_complexity 1 32 0 2 936 248 346 0 38 chr6 46018466 46018571 -103498466 + BC1_Mm scRNA scRNA 7 107 -45 2 936 181 146 42 0 chr6 46019053 46019101 -103497936 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 2 936 713 197 0 27 chr6 46019105 46019251 -103497786 - B1_Mur4 SINE Alu -8 142 1 2 936 238 316 117 7 chr6 46020807 46020944 -103496093 - MER5A DNA MER1_type -4 185 34 3 936 897 174 184 0 chr6 46021122 46021312 -103495725 + URR1A DNA MER1_type 2 226 0 3 936 191 281 15 30 chr6 46022416 46022482 -103494555 + MIR SINE MIR 87 151 -111 3 936 1054 48 27 0 chr6 46023111 46023258 -103493779 + (TTCCC)n Simple_repeat Simple_repeat 2 152 0 3 936 22 35 0 0 chr6 46024640 46024669 -103492368 + AT_rich Low_complexity Low_complexity 1 29 0 3 936 999 247 144 20 chr6 46025386 46025692 -103491345 + MTD LTR MaLR 46 389 -30 3 936 246 173 0 0 chr6 46025692 46025767 -103491270 + T-rich Low_complexity Low_complexity 1 75 0 3 936 1111 69 7 0 chr6 46025768 46025913 -103491124 - B1_Mm SINE Alu -1 146 1 3 936 850 271 10 29 chr6 46026561 46026770 -103490267 - B3 SINE B2 -4 212 8 3 936 1181 48 7 0 chr6 46027131 46027277 -103489760 - B1_Mm SINE Alu 0 147 1 3 936 4868 59 3 7 chr6 46028754 46029372 -103487665 + L1_Mus1 LINE L1 5952 6567 0 4 936 298 273 49 147 chr6 46029762 46029925 -103487112 + MLT1B LTR MaLR 63 209 -181 4 936 27 0 0 0 chr6 46030090 46030117 -103486920 + AT_rich Low_complexity Low_complexity 1 27 0 4 936 1280 180 9 0 chr6 46030834 46031051 -103485986 - URR1B DNA MER1_type 0 225 7 4 936 3143 32 13 0 chr6 46031139 46031519 -103485518 - L1Md_F3 LINE L1 -14 6570 6186 4 936 627 221 69 0 chr6 46031647 46031778 -103485259 + B3A SINE B2 9 148 -50 4 936 32 43 0 0 chr6 46032011 46032057 -103484980 + AT_rich Low_complexity Low_complexity 1 46 0 4 936 1161 244 66 18 chr6 46032131 46032465 -103484572 - MTEb LTR MaLR -9 370 21 4 936 422 75 0 15 chr6 46033404 46033472 -103483565 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 936 400 208 0 19 chr6 46034487 46034595 -103482442 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 4 936 571 277 55 98 chr6 46036678 46036934 -103480103 - MTEa LTR MaLR -134 245 1 5 936 626 282 8 0 chr6 46037060 46037191 -103479846 - B3 SINE B2 -84 132 1 5 936 22 56 0 0 chr6 46037921 46037957 -103479080 + AT_rich Low_complexity Low_complexity 1 36 0 5 936 260 389 26 17 chr6 46038189 46038304 -103478733 + MLT1A1 LTR MaLR 44 159 -249 5 936 367 292 125 0 chr6 46038347 46038467 -103478570 + MLT1A1 LTR MaLR 269 403 -5 5 936 26 30 0 0 chr6 46038951 46038984 -103478053 + AT_rich Low_complexity Low_complexity 1 33 0 5 936 378 0 0 0 chr6 46039272 46039314 -103477723 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 936 284 287 42 92 chr6 46039315 46039332 -103477705 - MLT2B1 LTR ERVL -72 484 473 5 936 7148 55 32 2 chr6 46039332 46040233 -103476804 + RLTR13B3 LTR ERVK 2 929 0 5 936 545 318 79 45 chr6 46040233 46040567 -103476470 - MLT2B1 LTR ERVL -84 472 36 5 936 330 344 180 38 chr6 46041949 46043255 -103473782 - L2a LINE L2 -263 3163 1670 5 936 519 333 84 27 chr6 46043562 46043824 -103473213 + B4A SINE B4 1 277 -15 5 936 450 0 0 0 chr6 46043831 46043881 -103473156 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 936 450 0 0 0 chr6 46043881 46043930 -103473107 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 936 433 89 38 0 chr6 46044803 46044882 -103472155 + (TATG)n Simple_repeat Simple_repeat 2 83 0 6 936 327 328 137 16 chr6 46044887 46045011 -103472026 - B3A SINE B2 -32 166 28 6 936 451 307 42 48 chr6 46045088 46045423 -103471614 + L1M3 LINE L1 4568 4900 -1240 6 936 224 246 88 0 chr6 46045424 46045481 -103471556 + B2_Mm2 SINE B2 2 63 -132 6 936 305 340 0 60 chr6 46045484 46045584 -103471453 + B3 SINE B2 89 182 -34 6 936 249 297 27 0 chr6 46045658 46045732 -103471305 + L1M3 LINE L1 4893 4968 -1172 6 936 1360 149 14 5 chr6 46045870 46046093 -103470944 + URR1B DNA MER1_type 1 225 0 6 936 562 301 55 88 chr6 46046374 46046556 -103470481 + B3A SINE B2 1 176 -19 6 936 189 151 37 19 chr6 46046699 46046753 -103470284 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 936 271 333 72 17 chr6 46047566 46047884 -103469153 + MLT2B4 LTR ERVL 66 502 -54 7 936 211 282 26 0 chr6 46047886 46047964 -103469073 + (TCTCTG)n Simple_repeat Simple_repeat 4 83 0 7 936 375 321 114 42 chr6 46048409 46048907 -103468130 - L1MC4 LINE L1 -966 7076 6543 7 936 206 244 0 0 chr6 46049118 46049159 -103467878 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 936 197 392 0 0 chr6 46049737 46049816 -103467221 + MIR SINE MIR 111 189 -73 7 936 482 309 47 8 chr6 46050763 46050890 -103466147 - B1_Mur1 SINE Alu -15 134 3 7 936 292 307 50 50 chr6 46050793 46050913 -103466124 - MT2B LTR ERVL -344 257 138 7 936 2780 196 109 85 chr6 46053348 46053532 -103463505 - RMER17A2 LTR ERVK 0 958 764 7 936 4805 72 20 0 chr6 46053532 46054144 -103462893 + RLTR1 LTR ERV1 1 624 0 7 936 4021 145 29 31 chr6 46054144 46054928 -103462109 - RMER17A2 LTR ERVK -195 763 1 7 936 256 350 0 0 chr6 46055363 46055460 -103461577 + (TG)n Simple_repeat Simple_repeat 1 97 0 7 936 531 0 0 0 chr6 46055466 46055525 -103461512 + (TA)n Simple_repeat Simple_repeat 1 59 0 8 936 599 39 0 13 chr6 46055986 46056065 -103460972 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 8 936 214 171 24 0 chr6 46056421 46056462 -103460575 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 936 798 262 45 0 chr6 46056680 46056882 -103460155 + B3 SINE B2 4 214 -2 8 936 370 298 100 36 chr6 46056977 46057228 -103459809 + Lx9 LINE L1 7266 7532 -112 8 936 21 0 0 0 chr6 46057586 46057607 -103459430 + AT_rich Low_complexity Low_complexity 1 21 0 8 936 260 212 25 0 chr6 46057715 46057795 -103459242 + (CATA)n Simple_repeat Simple_repeat 2 83 0 8 936 343 361 41 66 chr6 46057811 46058054 -103458983 - B4A SINE B4 -23 269 33 8 936 186 171 0 0 chr6 46058673 46058714 -103458323 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 8 936 1784 155 8 95 chr6 46058734 46058887 -103458150 + RMER10B LTR ERVL 42 195 -203 8 936 1014 107 0 0 chr6 46058887 46059037 -103458000 + (TTTCC)n Simple_repeat Simple_repeat 1 150 0 9 936 1088 128 6 0 chr6 46059038 46059217 -103457820 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 936 284 78 0 38 chr6 46059221 46059274 -103457763 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 9 936 1784 155 8 95 chr6 46059274 46059504 -103457533 + RMER10B LTR ERVL 196 395 -3 8 936 218 310 35 0 chr6 46059504 46059562 -103457475 - ID4 SINE ID -13 70 11 9 936 305 345 74 28 chr6 46059636 46059812 -103457225 - Tigger7 DNA MER2_type -2 2489 2306 9 936 767 269 64 5 chr6 46059797 46059984 -103457053 + B3 SINE B2 19 216 0 9 936 28 29 0 0 chr6 46059984 46060019 -103457018 + AT_rich Low_complexity Low_complexity 1 35 0 9 936 2239 165 14 61 chr6 46060041 46060467 -103456570 + RMER13B LTR ERVK 1 406 -502 9 936 594 99 0 0 chr6 46060467 46060558 -103456479 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 9 936 7683 88 22 3 chr6 46060586 46061655 -103455382 - Lx3_Mus LINE L1 -1 7008 5919 9 936 720 73 20 15 chr6 46061655 46061788 -103455249 + Lx3_Mus LINE L1 5824 5967 -1009 9 936 2088 198 68 22 chr6 46061788 46062284 -103454753 + RMER13B LTR ERVK 390 908 0 9 936 244 310 43 34 chr6 46062303 46062420 -103454617 - Tigger7 DNA MER2_type -2373 118 1 9 936 537 16 0 0 chr6 46063360 46063422 -103453615 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 936 567 0 0 0 chr6 46063422 46063484 -103453553 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 936 402 249 38 12 chr6 46065118 46065257 -103451780 - B3A SINE B2 -48 145 1 1 936 201 132 0 0 chr6 46065322 46065360 -103451677 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 936 283 333 55 8 chr6 46065503 46065630 -103451407 + MER5A DNA MER1_type 28 160 -29 1 936 387 60 0 0 chr6 46065772 46065822 -103451215 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 936 829 274 11 0 chr6 46065882 46066068 -103450969 + B3 SINE B2 1 188 -28 1 936 243 0 0 0 chr6 46066068 46066095 -103450942 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 936 228 184 20 20 chr6 46066098 46066148 -103450889 + (TATG)n Simple_repeat Simple_repeat 3 52 0 1 936 397 330 110 15 chr6 46066652 46066852 -103450185 - Lx8 LINE L1 -152 7321 7103 1 936 1316 134 0 0 chr6 46066857 46067059 -103449978 - Lx2 LINE L1 -927 6070 5869 1 936 266 167 0 0 chr6 46067060 46067114 -103449923 + Lx2 LINE L1 6944 6997 0 1 936 298 360 7 0 chr6 46067133 46067280 -103449757 + Lx8 LINE L1 6713 6860 -613 1 936 780 203 0 83 chr6 46067843 46067999 -103449038 - B1_Mur3 SINE Alu -6 143 1 1 936 3875 105 105 0 chr6 46068818 46069406 -103447631 + L1_Mus3 LINE L1 5977 6626 -12 1 936 819 0 0 0 chr6 46069407 46069498 -103447539 + (GAA)n Simple_repeat Simple_repeat 1 91 0 1 936 1141 68 7 0 chr6 46069505 46069651 -103447386 + B1_Mus2 SINE Alu 1 147 0 1 936 207 0 0 0 chr6 46069653 46069676 -103447361 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 936 9937 159 11 7 chr6 46071610 46074516 -103442521 - Lx2 LINE L1 -6 6991 4068 1 936 1740 113 17 11 chr6 46074532 46074807 -103442230 - L1_Mus2 LINE L1 -449 6117 5880 1 936 1485 108 0 5 chr6 46074807 46075022 -103442015 + L1_Mus2 LINE L1 6351 6564 -2 1 936 22 70 0 0 chr6 46075392 46075435 -103441602 + AT_rich Low_complexity Low_complexity 1 43 0 1 936 936 250 20 39 chr6 46075442 46075682 -103441355 + B4A SINE B4 1 235 -57 1 936 485 299 49 49 chr6 46075682 46075844 -103441193 + RSINE1 SINE B4 4 165 0 1 936 365 198 11 0 chr6 46075844 46075935 -103441102 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 936 182 294 59 0 chr6 46076172 46076240 -103440797 - MER5A DNA MER1_type -73 116 45 1 936 333 0 0 0 chr6 46076434 46076471 -103440566 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 936 796 296 90 4 chr6 46076521 46076789 -103440248 - RMER15 LTR ERVL -13 562 272 1 936 283 197 70 0 chr6 46076814 46076885 -103440152 - RMER15 LTR ERVL -445 130 55 1 936 354 360 110 29 chr6 46077570 46077816 -103439221 + MLT1B LTR MaLR 107 372 -18 1 936 654 368 32 25 chr6 46078912 46079191 -103437846 - B4A SINE B4 -3 289 9 1 936 348 325 8 0 chr6 46079511 46079631 -103437406 - Lx9 LINE L1 -310 7334 7214 1 936 457 302 137 42 chr6 46080186 46080449 -103436588 - B4 SINE B4 -4 288 1 1 936 1252 256 95 6 chr6 46081280 46081606 -103435431 + MTE2a LTR MaLR 5 359 -20 1 936 381 296 0 39 chr6 46081633 46081735 -103435302 + B4 SINE B4 54 151 -141 1 936 225 0 0 0 chr6 46081770 46081795 -103435242 + (T)n Simple_repeat Simple_repeat 1 25 0 1 936 534 137 0 0 chr6 46082324 46082419 -103434618 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 936 340 162 0 0 chr6 46082629 46082697 -103434340 - Lx LINE L1 -7 6647 6580 1 936 432 0 0 0 chr6 46084309 46084357 -103432680 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 936 24 67 0 0 chr6 46084668 46084713 -103432324 + AT_rich Low_complexity Low_complexity 1 45 0 1 936 4399 97 66 10 chr6 46085070 46085750 -103431287 - Lx3A LINE L1 -4 6977 6260 1 936 883 228 92 115 chr6 46085776 46086166 -103430871 - MT2A LTR ERVL -3 472 1 1 936 685 185 53 7 chr6 46086888 46087040 -103429997 + Lx2 LINE L1 6836 6994 -3 1 936 822 318 46 51 chr6 46088585 46088996 -103428041 - Lx8 LINE L1 -109 7364 6956 1 936 241 329 12 0 chr6 46088988 46089073 -103427964 + Lx8 LINE L1 6843 6928 -545 1 936 801 284 155 3 chr6 46089080 46089384 -103427653 - Lx8 LINE L1 -134 7339 6990 1 936 33 0 0 0 chr6 46089723 46089756 -103427281 + AT_rich Low_complexity Low_complexity 1 33 0 1 936 1584 40 0 0 chr6 46089825 46090024 -103427013 - L1Md_F2 LINE L1 -10 6572 6374 1 936 188 214 18 0 chr6 46091963 46092019 -103425018 + CT-rich Low_complexity Low_complexity 2 58 0 1 936 362 346 13 84 chr6 46092111 46092338 -103424699 - ID_B1 SINE B4 -8 216 6 1 936 2829 258 60 21 chr6 46093418 46094301 -103422736 + RCHARR1 DNA MER1_type 4 920 -54 1 936 192 307 0 0 chr6 46094663 46094738 -103422299 + A-rich Low_complexity Low_complexity 2 76 0 1 936 1263 94 0 0 chr6 46095023 46095203 -103421834 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 1 936 555 188 17 51 chr6 46095212 46095330 -103421707 - PB1D9 SINE Alu -6 114 1 1 936 35 24 0 0 chr6 46095427 46095469 -103421568 + AT_rich Low_complexity Low_complexity 1 42 0 1 936 324 375 47 8 chr6 46095472 46095601 -103421436 - RSINE1 SINE B4 -28 137 4 1 936 1024 117 31 58 chr6 46095658 46095849 -103421188 + B2_Mm2 SINE B2 2 187 -8 1 936 1578 225 53 5 chr6 46095878 46096275 -103420762 - MTD LTR MaLR -3 416 1 1 936 261 83 0 0 chr6 46097025 46097061 -103419976 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 1 936 811 325 18 14 chr6 46097605 46097880 -103419157 + B4A SINE B4 16 291 -1 1 936 677 248 22 0 chr6 46099046 46099183 -103417854 + B1_Mur2 SINE Alu 9 148 -1 1 936 517 314 135 75 chr6 46100397 46100745 -103416292 + MER82 DNA MER2_type 266 634 -19 1 936 1082 276 24 28 chr6 46100813 46101104 -103415933 - B4 SINE B4 -2 290 1 1 936 287 298 84 7 chr6 46101110 46101316 -103415721 - L1M5 LINE L1 -426 5738 5519 1 936 227 309 91 84 chr6 46101624 46101716 -103415321 - L1M5 LINE L1 -1055 5091 4981 1 936 441 0 0 0 chr6 46101716 46101765 -103415272 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 936 227 309 91 84 chr6 46101765 46101947 -103415090 - L1M5 LINE L1 -1166 4980 4816 1 936 8731 18 0 0 chr6 46102020 46103016 -103414021 - L1Md_A LINE L1 0 6582 5587 1 936 270 243 14 0 chr6 46103060 46103075 -103413962 + L1Md_F2 LINE L1 5830 5844 -447 1 936 2707 71 3 5 chr6 46103075 46103445 -103413592 - L1Md_F2 LINE L1 -4 6578 6210 1 936 520 52 0 0 chr6 46103445 46103508 -103413529 + L1Md_F2 LINE L1 5815 5899 -392 1 936 37984 12 1 7 chr6 46103502 46108712 -103408325 + L1Md_A LINE L1 415 5586 -297 1 936 8808 14 0 0 chr6 46108712 46109708 -103407329 + L1Md_A LINE L1 5587 6582 0 1 936 180 0 0 0 chr6 46109724 46109744 -103407293 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 936 1363 68 0 0 chr6 46109753 46109929 -103407108 + L1Md_F2 LINE L1 5862 6037 -545 1 936 1747 136 29 0 chr6 46109986 46110259 -103406778 - Lx3B LINE L1 -213 6760 6480 1 936 653 53 11 0 chr6 46110885 46110979 -103406058 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 1 936 298 362 34 25 chr6 46111281 46111400 -103405637 - Tigger5 DNA MER2_type -1 2405 2286 1 936 315 333 12 0 chr6 46111556 46111637 -103405400 - Tigger5 DNA MER2_type -2324 82 1 1 936 316 287 62 62 chr6 46111989 46112119 -103404918 + RSINE1 SINE B4 3 132 -33 1 936 285 29 0 0 chr6 46112144 46112178 -103404859 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 936 480 318 79 26 chr6 46112547 46112699 -103404338 + B3A SINE B2 2 161 -37 1 936 405 0 0 0 chr6 46112706 46112751 -103404286 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 936 1281 231 80 84 chr6 46113545 46113604 -103403433 - MTC LTR MaLR -8 413 355 1 936 477 0 0 0 chr6 46113604 46113657 -103403380 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 936 1281 231 80 84 chr6 46113657 46113790 -103403247 - MTC LTR MaLR -67 354 210 1 936 411 21 0 0 chr6 46113790 46113838 -103403199 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 936 1281 231 80 84 chr6 46113838 46114059 -103402978 - MTC LTR MaLR -212 209 4 1 936 208 327 154 6 chr6 46114077 46114278 -103402759 + MIR SINE MIR 30 264 -4 1 936 1340 60 38 0 chr6 46115468 46115492 -103401545 - B2_Mm1a SINE B2 -1 192 162 1 936 381 43 0 0 chr6 46115492 46115539 -103401498 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 936 1340 60 38 0 chr6 46115539 46115698 -103401339 - B2_Mm1a SINE B2 -32 161 3 1 936 1752 176 13 50 chr6 46115705 46116087 -103400950 - Lx LINE L1 -4 6650 6283 1 936 784 271 34 5 chr6 46116594 46116798 -103400239 + B3 SINE B2 1 210 -6 1 936 197 369 43 38 chr6 46117051 46117237 -103399800 - L2 LINE L2 -520 2899 2713 1 936 623 309 85 49 chr6 46117700 46118006 -103399031 - MER58B DNA MER1_type -24 317 1 1 936 267 221 24 0 chr6 46118920 46119047 -103397990 + (TA)n Simple_repeat Simple_repeat 1 130 0 1 936 181 75 24 24 chr6 46119082 46119123 -103397914 + (TTATA)n Simple_repeat Simple_repeat 4 44 0 1 936 235 242 46 20 chr6 46119125 46119277 -103397760 + (TA)n Simple_repeat Simple_repeat 1 156 0 1 936 1852 222 31 34 chr6 46119313 46119727 -103397310 - MTC LTR MaLR -8 413 1 1 936 234 221 55 55 chr6 46119727 46119811 -103397226 + B3A SINE B2 26 109 -89 1 936 24 32 0 0 chr6 46122034 46122065 -103394972 + AT_rich Low_complexity Low_complexity 1 31 0 1 936 24 0 0 0 chr6 46122344 46122368 -103394669 + AT_rich Low_complexity Low_complexity 1 24 0 1 936 888 180 97 34 chr6 46122375 46122582 -103394455 - Lx4A LINE L1 -3 7055 6836 1 936 376 345 81 51 chr6 46122709 46123005 -103394032 - MLT1A0 LTR MaLR -42 323 19 1 936 671 314 92 25 chr6 46123468 46123782 -103393255 - MLT1C LTR MaLR 0 467 133 1 936 604 258 36 30 chr6 46123751 46123980 -103393057 + MTE2a LTR MaLR 126 419 0 1 936 360 343 324 32 chr6 46124000 46124226 -103392811 + B4A SINE B4 1 292 0 1 936 216 0 0 0 chr6 46124992 46125016 -103392021 + (T)n Simple_repeat Simple_repeat 1 24 0 1 936 1115 88 0 0 chr6 46125016 46125163 -103391874 - B1_Mus2 SINE Alu 0 147 1 1 936 4585 90 0 3 chr6 46125178 46125813 -103391224 - L1Md_F2 LINE L1 -2 6580 5948 1 936 22 0 0 0 chr6 46126007 46126029 -103391008 + AT_rich Low_complexity Low_complexity 1 22 0 2 936 225 0 0 0 chr6 46126828 46126853 -103390184 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 936 31 26 0 0 chr6 46127062 46127100 -103389937 + AT_rich Low_complexity Low_complexity 1 38 0 2 936 228 212 0 0 chr6 46127353 46127419 -103389618 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 936 938 322 61 34 chr6 46128329 46128801 -103388236 - MER31A LTR ERV1 0 485 1 2 936 27 0 0 0 chr6 46130568 46130595 -103386442 + AT_rich Low_complexity Low_complexity 1 27 0 2 936 289 304 151 44 chr6 46130915 46131166 -103385871 + B4 SINE B4 1 278 -14 2 936 499 122 11 11 chr6 46131199 46131290 -103385747 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 936 240 263 35 0 chr6 46131728 46131785 -103385252 - MER58B DNA MER1_type -23 318 260 2 936 242 400 0 58 chr6 46132770 46132908 -103384129 - MLT1J LTR MaLR -270 242 113 2 936 405 0 0 0 chr6 46133683 46133728 -103383309 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 936 335 276 9 5 chr6 46133952 46134033 -103383004 + B4A SINE B4 4 87 -78 2 936 1864 152 12 6 chr6 46134033 46134376 -103382661 - L1_Mur2 LINE L1 -563 5314 4970 2 936 1584 150 7 11 chr6 46134383 46134660 -103382377 + Lx LINE L1 6377 6652 -2 2 936 426 39 0 0 chr6 46134838 46134890 -103382147 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 936 679 326 58 16 chr6 46135761 46136191 -103380846 - L1MB3 LINE L1 -1 6182 5735 2 936 654 79 0 0 chr6 46136221 46136310 -103380727 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 936 24 0 0 0 chr6 46136489 46136513 -103380524 + AT_rich Low_complexity Low_complexity 1 24 0 2 936 536 326 27 0 chr6 46136707 46136854 -103380183 + RSINE1 SINE B4 11 161 -4 2 936 649 0 25 0 chr6 46136855 46136936 -103380101 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 2 14 493 392 64 4 chr6 46137183 46137434 -103379603 - B4A SINE B4 -8 284 19 2 937 206 277 15 15 chr6 46138187 46138253 -103378784 + CT-rich Low_complexity Low_complexity 2 67 0 2 937 1451 104 28 59 chr6 46138863 46139118 -103377919 - L1Md_F2 LINE L1 -7 6575 6329 2 937 448 273 139 0 chr6 46139640 46139827 -103377210 + B3 SINE B2 1 213 -3 2 937 21 0 0 0 chr6 46140277 46140298 -103376739 + AT_rich Low_complexity Low_complexity 1 21 0 2 937 682 199 13 54 chr6 46142294 46142443 -103374594 + B1_Mur4 SINE Alu 3 145 -5 2 937 294 106 0 0 chr6 46142455 46142502 -103374535 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 937 21 0 0 0 chr6 46145925 46145946 -103371091 + AT_rich Low_complexity Low_complexity 1 21 0 2 937 22 35 0 0 chr6 46146844 46146873 -103370164 + AT_rich Low_complexity Low_complexity 1 29 0 2 937 26 50 0 0 chr6 46147264 46147304 -103369733 + AT_rich Low_complexity Low_complexity 1 40 0 2 937 23 0 0 0 chr6 46147713 46147736 -103369301 + AT_rich Low_complexity Low_complexity 1 23 0 2 937 2488 163 148 6 chr6 46147840 46148297 -103368740 - RMER4B LTR ERVK 0 585 79 2 937 482 0 0 17 chr6 46148297 46148356 -103368681 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2 937 2488 163 148 6 chr6 46148356 46148410 -103368627 - RMER4B LTR ERVK -507 78 3 2 937 594 60 0 0 chr6 46150038 46150121 -103366916 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 937 22 0 0 0 chr6 46150169 46150191 -103366846 + AT_rich Low_complexity Low_complexity 1 22 0 2 937 333 0 0 0 chr6 46150228 46150265 -103366772 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 937 252 0 0 0 chr6 46150265 46150292 -103366745 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 937 30 27 0 0 chr6 46150558 46150595 -103366442 + AT_rich Low_complexity Low_complexity 1 37 0 2 937 22 0 0 0 chr6 46154346 46154368 -103362669 + AT_rich Low_complexity Low_complexity 1 22 0 2 937 578 266 38 65 chr6 46154733 46154918 -103362119 - ORR1B2 LTR MaLR -185 182 3 2 937 423 0 0 0 chr6 46156413 46156460 -103360577 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 937 227 240 120 0 chr6 46156460 46156510 -103360527 - RSINE1 SINE B4 -1 164 109 2 937 1864 185 14 3 chr6 46156551 46156898 -103360139 - RLTR15 LTR ERVK -8 351 1 2 937 322 306 0 35 chr6 46157631 46157746 -103359291 + CT-rich Low_complexity Low_complexity 1 111 0 2 937 756 218 135 32 chr6 46158053 46158208 -103358829 + URR1A DNA MER1_type 1 179 -47 2 937 1991 144 6 55 chr6 46158208 46158554 -103358483 - ORR1A4 LTR MaLR 0 329 1 2 937 756 218 135 32 chr6 46158554 46158583 -103358454 + URR1A DNA MER1_type 180 204 -22 2 937 276 29 0 0 chr6 46158582 46158616 -103358421 + B1_Mm SINE Alu 110 143 -4 2 937 312 314 0 108 chr6 46159220 46159359 -103357678 - B4A SINE B4 -167 125 2 2 937 600 288 40 5 chr6 46159581 46159780 -103357257 - B3 SINE B2 -10 206 1 2 937 2197 37 4 0 chr6 46160524 46160832 -103356205 + L1Md_A LINE L1 6314 6582 0 2 937 258 301 0 57 chr6 46161103 46161191 -103355846 + ID2 SINE ID 1 83 0 2 937 687 257 0 0 chr6 46161295 46161431 -103355606 - B1_Mur2 SINE Alu -13 136 1 2 937 4493 64 2 21 chr6 46162109 46162714 -103354323 + L1Md_F2 LINE L1 5978 6570 -12 2 937 270 0 0 0 chr6 46162882 46162912 -103354125 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 937 611 351 21 36 chr6 46163652 46163844 -103353193 - B3 SINE B2 -27 189 1 2 937 625 282 100 118 chr6 46165202 46165574 -103351463 + MTE2a LTR MaLR 1 384 -23 2 937 23 0 0 0 chr6 46165840 46165863 -103351174 + AT_rich Low_complexity Low_complexity 1 23 0 2 937 515 129 47 0 chr6 46166317 46166402 -103350635 + B2_Mm2 SINE B2 19 107 -88 2 937 200 123 50 50 chr6 46166431 46166491 -103350546 + (CAGAG)n Simple_repeat Simple_repeat 3 62 0 2 937 225 206 51 64 chr6 46166545 46166623 -103350414 - L1MEd LINE L1 -4978 1247 1171 2 937 306 301 126 0 chr6 46167140 46167283 -103349754 - Tigger5 DNA MER2_type -2208 198 38 2 937 231 332 112 41 chr6 46167327 46167622 -103349415 - L1MEd LINE L1 -5405 714 399 2 937 226 307 29 10 chr6 46167849 46167951 -103349086 - L1MEd LINE L1 -6009 110 7 2 937 519 17 0 0 chr6 46168143 46168203 -103348834 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 937 25 0 0 0 chr6 46168749 46168774 -103348263 + AT_rich Low_complexity Low_complexity 1 25 0 2 937 24 0 0 0 chr6 46170092 46170116 -103346921 + AT_rich Low_complexity Low_complexity 1 24 0 2 937 2774 181 88 31 chr6 46170132 46170748 -103346289 - RMER19B LTR ERVK -7 895 245 2 937 39436 4 0 0 chr6 46170770 46176774 -103340263 - L1Md_A LINE L1 0 6582 578 2 937 805 138 43 0 chr6 46176774 46176912 -103340125 - RMER19B LTR ERVK -758 144 1 2 937 553 268 20 55 chr6 46177914 46178060 -103338977 - B1_Mur1 SINE Alu -8 141 1 2 937 290 292 31 31 chr6 46178118 46178312 -103338725 - L1MC4a LINE L1 -817 7225 7032 2 937 22 35 0 0 chr6 46178335 46178364 -103338673 + AT_rich Low_complexity Low_complexity 1 29 0 2 937 386 321 162 22 chr6 46178431 46178839 -103338198 - L1MC4a LINE L1 -968 6914 6450 2 937 1127 75 0 0 chr6 46179426 46179573 -103337464 + B1_Mus1 SINE Alu 2 148 0 2 937 489 186 0 0 chr6 46179573 46179697 -103337340 + A-rich Low_complexity Low_complexity 1 124 0 2 937 317 318 138 82 chr6 46180143 46180434 -103336603 - MLT1F-int LTR MaLR -335 1154 848 2 937 225 324 0 39 chr6 46180494 46180571 -103336466 + ID_B1 SINE B4 109 182 -42 2 937 1053 153 6 6 chr6 46180657 46180834 -103336203 + B2_Mm2 SINE B2 1 177 -18 2 937 248 300 17 0 chr6 46180840 46180900 -103336137 + RSINE1 SINE B4 80 140 -25 2 937 381 22 0 0 chr6 46180911 46180957 -103336080 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 937 405 86 0 0 chr6 46180957 46181015 -103336022 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 937 478 305 130 57 chr6 46181072 46181426 -103335611 - MLT1F-int LTR MaLR -679 810 431 2 937 250 274 178 0 chr6 46181618 46181691 -103335346 - MTEa LTR MaLR -226 153 68 2 937 361 390 49 45 chr6 46181744 46181828 -103335209 - MLT1F-int LTR MaLR -1128 361 269 2 937 2308 187 24 5 chr6 46181828 46182241 -103334796 + MTC LTR MaLR 1 421 0 2 937 361 390 49 45 chr6 46182241 46182379 -103334658 - MLT1F-int LTR MaLR -1221 268 138 2 937 232 325 0 0 chr6 46183303 46183383 -103333654 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 937 399 21 0 0 chr6 46183457 46183505 -103333532 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 937 600 188 8 8 chr6 46183844 46183962 -103333075 - ORR1D1 LTR MaLR -247 127 10 2 937 252 284 22 11 chr6 46184506 46184595 -103332442 + (TG)n Simple_repeat Simple_repeat 1 90 0 2 937 323 101 38 12 chr6 46184596 46184676 -103332361 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 937 21 36 0 0 chr6 46184898 46184926 -103332111 + AT_rich Low_complexity Low_complexity 1 28 0 2 937 598 340 21 5 chr6 46185431 46185617 -103331420 + B3A SINE B2 5 193 -5 2 937 384 295 81 7 chr6 46186562 46186806 -103330231 - MTEb LTR MaLR 0 379 89 2 937 195 344 78 28 chr6 46187540 46187730 -103329307 - L2c LINE L2 -40 3386 3182 2 937 327 352 19 0 chr6 46188256 46188364 -103328673 + PB1D10 SINE Alu 7 116 -1 2 937 221 388 142 10 chr6 46188373 46188675 -103328362 - L2c LINE L2 -496 2923 2582 2 937 1235 162 54 27 chr6 46189555 46189777 -103327260 - RLTR23 LTR ERV1 0 430 203 2 937 330 242 154 0 chr6 46189814 46189905 -103327132 - RLTR23 LTR ERV1 -325 105 1 2 937 1024 270 30 54 chr6 46190910 46191251 -103325786 - ORR1E LTR MaLR -29 350 1 2 937 648 316 84 20 chr6 46191908 46192157 -103324880 - B4A SINE B4 -26 266 2 2 937 252 0 0 0 chr6 46192495 46192523 -103324514 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 937 285 29 0 0 chr6 46193492 46193526 -103323511 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 937 1477 173 52 132 chr6 46193557 46193757 -103323280 - RMER17C LTR ERVK 0 410 230 2 937 1048 103 12 0 chr6 46193757 46193922 -103323115 + (GA)n Simple_repeat Simple_repeat 2 168 0 2 937 1477 173 52 132 chr6 46193922 46194167 -103322870 - RMER17C LTR ERVK -181 229 1 2 937 338 326 10 0 chr6 46194765 46194863 -103322174 + MER81 DNA AcHobo 16 114 0 2 937 263 313 71 57 chr6 46196623 46196833 -103320204 + RLTR15 LTR ERVK 127 339 -20 2 937 2286 182 70 41 chr6 46197073 46197561 -103319476 - RMER5 LTR ERV1 -30 504 3 2 937 230 42 20 20 chr6 46197870 46197919 -103319118 - Lx2 LINE L1 0 6997 6949 2 937 1083 86 0 0 chr6 46198159 46198298 -103318739 + B1_Mus1 SINE Alu 1 139 -9 3 937 1204 275 97 24 chr6 46198457 46198923 -103318114 + RMER5 LTR ERV1 33 532 -2 3 937 914 272 58 15 chr6 46198933 46199262 -103317775 + RLTR15 LTR ERVK 1 343 -16 3 937 1233 209 0 5 chr6 46199372 46199593 -103317444 - URR1B DNA MER1_type 0 225 6 3 937 379 302 45 117 chr6 46199373 46199725 -103317312 + CYRA11_Mm Unknown Y-chromosome 172 498 -119 3 937 180 0 0 0 chr6 46199770 46199790 -103317247 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 937 1021 155 125 0 chr6 46200289 46200489 -103316548 + URR1B DNA MER1_type 1 225 0 3 937 792 50 0 0 chr6 46201140 46201241 -103315796 + (GA)n Simple_repeat Simple_repeat 2 102 0 3 937 180 0 0 0 chr6 46201385 46201405 -103315632 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 937 2739 118 35 24 chr6 46201586 46202011 -103315026 - RLTR23 LTR ERV1 0 430 1 3 937 486 0 0 0 chr6 46202276 46202330 -103314707 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 937 1281 34 0 38 chr6 46202680 46202866 -103314171 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 3 937 1723 95 4 0 chr6 46203447 46203688 -103313349 - Lx LINE L1 -407 6247 6006 3 937 1877 199 10 32 chr6 46203691 46204101 -103312936 + Lx LINE L1 6253 6653 -1 3 937 651 26 0 0 chr6 46204152 46204229 -103312808 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 937 461 250 102 0 chr6 46204241 46204349 -103312688 - RSINE1 SINE B4 -35 130 12 3 937 1673 228 57 134 chr6 46204362 46204823 -103312214 + RMER15 LTR ERVL 11 460 -115 3 937 3017 189 150 75 chr6 46204823 46205662 -103311375 - RMER19B LTR ERVK 0 902 1 3 937 1673 228 57 134 chr6 46205662 46205797 -103311240 + RMER15 LTR ERVL 461 561 -14 3 937 335 291 112 17 chr6 46206668 46206846 -103310191 + MER33 DNA MER1_type 7 201 -123 3 937 926 217 73 11 chr6 46206868 46207059 -103309978 + B3 SINE B2 10 212 -4 3 937 439 291 9 0 chr6 46208835 46208945 -103308092 - MER5A1 DNA MER1_type -46 120 10 3 937 21 0 0 0 chr6 46209235 46209256 -103307781 + AT_rich Low_complexity Low_complexity 1 21 0 3 937 1203 229 141 29 chr6 46209701 46210078 -103306959 - MTD LTR MaLR 0 419 1 3 937 180 158 0 0 chr6 46210786 46210824 -103306213 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 937 663 348 98 15 chr6 46211095 46211171 -103305866 - MLT1A0 LTR MaLR 0 365 281 3 937 366 23 0 0 chr6 46211171 46211214 -103305823 + (ATG)n Simple_repeat Simple_repeat 3 45 0 3 937 663 348 98 15 chr6 46211214 46211464 -103305573 - MLT1A0 LTR MaLR -85 280 13 3 937 3821 158 40 30 chr6 46212103 46212838 -103304199 + RMER6A LTR ERVK 1 742 -14 3 937 242 143 0 20 chr6 46215800 46215850 -103301187 + CT-rich Low_complexity Low_complexity 4 52 0 3 937 4963 52 2 8 chr6 46216164 46216785 -103300252 - L1Md_F2 LINE L1 -12 6570 5954 3 937 457 268 194 14 chr6 46216832 46216976 -103300061 - RMER15 LTR ERVL -34 541 372 3 937 23 33 0 0 chr6 46217244 46217274 -103299763 + AT_rich Low_complexity Low_complexity 1 30 0 3 937 658 257 0 7 chr6 46217333 46217474 -103299563 - B1_Mur1 SINE Alu -9 140 1 3 937 275 332 191 19 chr6 46217800 46218067 -103298970 + L2 LINE L2 1213 1525 -1894 3 937 492 348 143 32 chr6 46218323 46218827 -103298210 + L2 LINE L2 2241 2800 -619 3 937 1652 200 96 14 chr6 46219456 46219840 -103297197 - MTD LTR MaLR -16 403 1 3 937 11479 24 0 0 chr6 46220014 46222097 -103294940 - L1Md_T LINE L1 0 6582 4500 3 937 211 322 30 79 chr6 46222311 46222412 -103294625 + B1F SINE Alu 13 108 -41 3 937 180 263 71 31 chr6 46222609 46222707 -103294330 + MIRc SINE MIR 125 226 -42 3 937 635 312 97 72 chr6 46223217 46223566 -103293471 - MLT1A0 LTR MaLR -5 360 3 3 937 21 0 0 0 chr6 46225279 46225300 -103291737 + AT_rich Low_complexity Low_complexity 1 21 0 3 937 365 222 0 0 chr6 46225326 46225389 -103291648 - PB1D10 SINE Alu -9 108 46 3 937 21 36 0 0 chr6 46228773 46228801 -103288236 + AT_rich Low_complexity Low_complexity 1 28 0 3 937 1109 22 0 0 chr6 46228987 46229125 -103287912 - B1_Mm SINE Alu 0 147 10 3 937 2789 203 151 39 chr6 46229784 46230643 -103286394 - RMER1B Other Other -1 1065 98 3 937 289 365 108 42 chr6 46230844 46231056 -103285981 - ORR1E LTR MaLR -120 239 14 3 937 898 266 146 26 chr6 46231071 46231410 -103285627 + L1MB1 LINE L1 5416 5804 -385 3 937 675 67 0 0 chr6 46231410 46231499 -103285538 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 937 898 266 146 26 chr6 46231499 46231653 -103285384 + L1MB1 LINE L1 5805 5968 -221 3 937 227 275 109 71 chr6 46231662 46231846 -103285191 + L1MA9 LINE L1 6004 6194 -118 3 937 192 158 0 0 chr6 46232822 46232860 -103284177 + T-rich Low_complexity Low_complexity 1 38 0 3 937 1112 66 0 0 chr6 46233063 46233200 -103283837 + B1_Mm SINE Alu 2 138 -9 3 937 206 118 0 0 chr6 46233212 46233246 -103283791 + (A)n Simple_repeat Simple_repeat 1 34 0 3 937 581 247 214 0 chr6 46233409 46233587 -103283450 + B3 SINE B2 1 216 0 3 937 180 152 0 0 chr6 46234935 46234968 -103282069 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 937 378 284 76 12 chr6 46235032 46235203 -103281834 - MER99 DNA hAT? -377 454 273 3 937 23 0 0 0 chr6 46235353 46235376 -103281661 + AT_rich Low_complexity Low_complexity 1 23 0 3 937 308 325 121 32 chr6 46235416 46235664 -103281373 + MER2 DNA MER2_type 71 340 -5 3 937 1043 268 39 44 chr6 46236178 46236561 -103280476 - RMER17C LTR ERVK -29 381 1 3 937 35575 48 1 3 chr6 46237385 46243044 -103273993 + L1Md_T LINE L1 1 5589 -297 3 937 8429 33 0 0 chr6 46243044 46244066 -103272971 + L1Md_T LINE L1 5590 6585 0 3 937 329 361 154 9 chr6 46244583 46244927 -103272110 + MLT1A1-int LTR MaLR 956 1349 -22 3 937 3621 217 45 19 chr6 46244972 46245780 -103271257 + Lx5 LINE L1 6219 7047 -3 3 937 232 213 118 13 chr6 46246012 46246088 -103270949 + MLT1A1 LTR MaLR 325 408 0 3 937 519 305 39 64 chr6 46246285 46246488 -103270549 - B3A SINE B2 0 198 1 3 937 22 0 0 0 chr6 46247820 46247842 -103269195 + AT_rich Low_complexity Low_complexity 1 22 0 3 937 216 0 0 0 chr6 46248699 46248723 -103268314 + (T)n Simple_repeat Simple_repeat 1 24 0 3 937 32884 70 3 4 chr6 46249534 46254809 -103262228 + L1Md_F2 LINE L1 226 5589 -297 3 937 7880 53 3 2 chr6 46254809 46255804 -103261233 + L1Md_F2 LINE L1 5590 6585 0 3 937 294 269 37 0 chr6 46255821 46255929 -103261108 + Lx9 LINE L1 7532 7643 -1 3 937 595 275 50 0 chr6 46255971 46256153 -103260884 + B3A SINE B2 2 192 -6 3 937 309 379 24 0 chr6 46256157 46256326 -103260711 + L1M5 LINE L1 3773 3945 -2201 3 937 1394 215 36 39 chr6 46256435 46256846 -103260191 - RMER17C LTR ERVK 0 410 1 3 937 27 49 0 0 chr6 46257002 46257043 -103259994 + AT_rich Low_complexity Low_complexity 1 41 0 3 937 1198 80 11 0 chr6 46257918 46258094 -103258943 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 3 937 1242 33 0 0 chr6 46258276 46258427 -103258610 + (TG)n Simple_repeat Simple_repeat 2 152 0 3 937 584 308 34 107 chr6 46259191 46259453 -103257584 + B4A SINE B4 48 290 -2 3 937 2144 114 3 3 chr6 46260312 46260630 -103256407 + Lx LINE L1 6325 6642 -12 3 937 269 270 87 46 chr6 46260893 46261022 -103256015 + Charlie5 DNA MER1_type 6 136 -2488 3 937 293 231 0 0 chr6 46261514 46261579 -103255458 + MLT1D LTR MaLR 433 497 -8 3 937 387 306 117 87 chr6 46262080 46262438 -103254599 + ORR1D1 LTR MaLR 6 374 0 3 117 29499 116 32 6 chr6 46262668 46268878 -103248159 - L1_Mus1 LINE L1 0 6567 189 3 938 2172 111 6 58 chr6 46269001 46269346 -103247691 - ORR1A2 LTR MaLR 0 327 1 3 938 182 274 0 23 chr6 46270438 46270524 -103246513 + CT-rich Low_complexity Low_complexity 3 86 0 3 938 217 156 22 0 chr6 46271878 46271923 -103245114 + T-rich Low_complexity Low_complexity 4 49 0 3 938 1170 55 0 7 chr6 46271956 46272104 -103244933 + B1_Mus1 SINE Alu 2 148 0 3 938 250 221 18 21 chr6 46272498 46272563 -103244474 - B1_Mur1 SINE Alu 0 149 86 3 938 234 91 0 0 chr6 46272609 46272642 -103244395 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 938 347 325 0 0 chr6 46272645 46272728 -103244309 - B3A SINE B2 -58 140 58 3 938 2011 85 44 0 chr6 46272746 46273041 -103243996 - L1_Mus1 LINE L1 0 6567 6260 3 938 489 87 0 0 chr6 46273091 46273160 -103243877 + L1Md_F2 LINE L1 5770 5838 -744 3 938 245 161 16 82 chr6 46273160 46273221 -103243816 - B3A SINE B2 -114 84 28 3 938 408 109 0 0 chr6 46273326 46273381 -103243656 + RLTR13A LTR ERVK 1 55 -800 3 938 23 0 0 0 chr6 46273407 46273430 -103243607 + AT_rich Low_complexity Low_complexity 1 23 0 3 938 3341 81 4 2 chr6 46273446 46273902 -103243135 - L1_Mus4 LINE L1 -7 6629 6173 3 938 251 266 45 9 chr6 46274473 46274583 -103242454 + (TG)n Simple_repeat Simple_repeat 2 115 0 3 938 710 302 22 0 chr6 46274627 46274806 -103242231 + B3 SINE B2 1 183 -33 3 938 315 0 0 0 chr6 46274808 46274843 -103242194 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 938 28 48 0 0 chr6 46275204 46275246 -103241791 + AT_rich Low_complexity Low_complexity 1 42 0 3 938 30 83 0 0 chr6 46275306 46275378 -103241659 + AT_rich Low_complexity Low_complexity 1 72 0 3 938 822 190 108 38 chr6 46275647 46275833 -103241204 + ORR1C2 LTR MaLR 178 376 -8 3 938 207 352 179 17 chr6 46276167 46276520 -103240517 - L2 LINE L2 -540 2879 2470 3 938 282 29 0 125 chr6 46276535 46276655 -103240382 + GA-rich Low_complexity Low_complexity 1 105 0 3 938 26 0 0 0 chr6 46277320 46277346 -103239691 + AT_rich Low_complexity Low_complexity 1 26 0 3 938 21 36 0 0 chr6 46277656 46277684 -103239353 + AT_rich Low_complexity Low_complexity 1 28 0 3 938 751 250 29 20 chr6 46277694 46277898 -103239139 + B3 SINE B2 1 206 -10 3 938 216 0 0 0 chr6 46278727 46278751 -103238286 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 4 938 236 304 71 14 chr6 46279122 46279192 -103237845 + B4 SINE B4 42 115 -177 4 938 503 187 87 25 chr6 46279180 46279306 -103237731 + MTEb LTR MaLR 248 372 -2 4 938 235 132 0 0 chr6 46279386 46279424 -103237613 - L1M LINE L1 -962 5341 5304 4 938 850 262 49 0 chr6 46279565 46279748 -103237289 + Lx6 LINE L1 6924 7115 -345 4 938 543 69 0 0 chr6 46279749 46279821 -103237216 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 938 943 235 15 5 chr6 46279838 46280035 -103237002 - MTD LTR MaLR -220 199 1 4 938 1363 186 39 21 chr6 46280106 46280386 -103236651 + Lx6 LINE L1 7176 7460 0 4 938 7368 72 23 6 chr6 46281015 46282010 -103235027 - L1_Mus3 LINE L1 -7 6631 5620 4 938 3137 122 37 0 chr6 46282010 46282494 -103234543 + L1_Mus3 LINE L1 5150 5651 -232 4 938 9174 121 11 2 chr6 46282881 46283944 -103233093 - Lx3A LINE L1 -3 6978 5911 4 938 309 19 56 19 chr6 46283944 46283998 -103233039 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 4 938 9174 97 7 2 chr6 46283998 46284572 -103232465 - Lx3A LINE L1 -1071 5910 5332 4 938 425 334 69 66 chr6 46284643 46284992 -103232045 - Lx8 LINE L1 -123 7350 7001 4 938 270 167 0 0 chr6 46285063 46285123 -103231914 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 938 408 356 0 0 chr6 46285574 46285675 -103231362 + B3A SINE B2 30 130 -68 4 938 645 49 0 0 chr6 46285756 46285837 -103231200 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 938 211 345 62 56 chr6 46285924 46286102 -103230935 - L4 LINE RTE -492 1537 1359 4 938 555 66 0 0 chr6 46286598 46286674 -103230363 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 4 938 669 25 0 0 chr6 46286674 46286753 -103230284 + (GGGAA)n Simple_repeat Simple_repeat 2 80 0 4 938 732 136 22 33 chr6 46287462 46287644 -103229393 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 938 198 0 0 0 chr6 46288031 46288053 -103228984 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 4 938 2042 56 0 0 chr6 46288890 46289140 -103227897 + L1_Mus1 LINE L1 6317 6566 -1 4 938 202 191 0 41 chr6 46289259 46289308 -103227729 + A-rich Low_complexity Low_complexity 2 48 0 4 938 353 312 25 25 chr6 46289457 46289615 -103227422 + MER5A1 DNA MER1_type 2 159 -7 4 938 1619 307 60 47 chr6 46290351 46290380 -103226657 + Lx8 LINE L1 6780 6806 -667 4 938 3246 194 29 11 chr6 46290380 46291031 -103226006 - Lx LINE L1 0 6654 5992 4 938 1619 307 60 47 chr6 46291031 46291682 -103225355 + Lx8 LINE L1 6807 7468 -5 4 938 23 78 0 0 chr6 46292472 46292523 -103224514 + AT_rich Low_complexity Low_complexity 1 51 0 4 938 5520 57 3 1 chr6 46292687 46293459 -103223578 - L1Md_F2 LINE L1 -632 5950 5178 4 938 5662 39 3 1 chr6 46293459 46294146 -103222891 + L1Md_F2 LINE L1 5895 6582 0 4 938 189 149 60 60 chr6 46294757 46294807 -103222230 + L3 LINE CR1 2091 2140 -2349 4 938 590 272 127 53 chr6 46295678 46296167 -103220870 + L1MA6 LINE L1 5775 6299 -1 4 938 585 283 72 52 chr6 46296173 46296367 -103220670 + B3A SINE B2 1 198 0 4 938 28 0 0 0 chr6 46296367 46296395 -103220642 + AT_rich Low_complexity Low_complexity 1 28 0 4 938 235 290 16 0 chr6 46296400 46296462 -103220575 - MIRb SINE MIR -96 172 110 4 938 344 362 7 13 chr6 46297947 46298098 -103218939 + (TATG)n Simple_repeat Simple_repeat 3 152 0 4 938 180 77 0 0 chr6 46298586 46298612 -103218425 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 938 24 0 0 0 chr6 46298630 46298654 -103218383 + AT_rich Low_complexity Low_complexity 1 24 0 4 938 813 249 28 9 chr6 46298727 46298938 -103218099 + B3 SINE B2 2 216 0 4 938 696 128 47 31 chr6 46299104 46299233 -103217804 - L1Md_A LINE L1 -6153 571 441 4 938 3950 54 2 4 chr6 46299241 46299742 -103217295 + L1Md_F2 LINE L1 6081 6580 -2 4 938 670 132 12 19 chr6 46300428 46300590 -103216447 + (TA)n Simple_repeat Simple_repeat 1 161 0 4 938 182 217 232 0 chr6 46301025 46301094 -103215943 + MIRc SINE MIR 44 128 -140 4 938 1286 59 0 17 chr6 46302601 46302774 -103214263 + B2_Mm1t SINE B2 15 184 -9 4 938 355 273 71 0 chr6 46304410 46304509 -103212528 - PB1D7 SINE Alu -2 118 13 4 938 197 260 0 13 chr6 46304553 46304631 -103212406 + (TATG)n Simple_repeat Simple_repeat 4 80 0 4 938 324 127 0 0 chr6 46304841 46304896 -103212141 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 938 434 252 9 0 chr6 46305017 46305124 -103211913 - L1M2 LINE L1 -504 5793 5686 4 938 279 292 11 0 chr6 46305161 46305250 -103211787 + L1M2 LINE L1 5541 5630 -661 4 938 743 331 92 30 chr6 46306160 46306431 -103210606 + B4A SINE B4 5 292 0 4 938 429 54 0 0 chr6 46306453 46306509 -103210528 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 938 310 277 17 35 chr6 46307490 46307606 -103209431 - Lx8 LINE L1 -2 7471 7358 4 938 6777 101 6 11 chr6 46307642 46308629 -103208408 + L1_Mus4 LINE L1 5659 6636 0 4 938 1405 260 16 35 chr6 46308641 46309015 -103208022 - Lx8 LINE L1 -139 7334 6968 4 938 204 202 49 37 chr6 46309387 46309469 -103207568 + (TTAA)n Simple_repeat Simple_repeat 4 86 0 4 938 21 0 0 0 chr6 46310032 46310053 -103206984 + AT_rich Low_complexity Low_complexity 1 21 0 4 938 267 31 0 0 chr6 46310120 46310152 -103206885 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 938 1070 68 7 14 chr6 46311596 46311744 -103205293 + B1_Mus1 SINE Alu 2 148 0 4 938 278 67 0 22 chr6 46311744 46311790 -103205247 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 4 938 21 36 0 0 chr6 46311951 46311979 -103205058 + AT_rich Low_complexity Low_complexity 1 28 0 4 938 558 0 0 0 chr6 46312025 46312087 -103204950 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 938 515 211 2 29 chr6 46312651 46312776 -103204261 + MTE2b LTR MaLR 259 379 0 4 938 2974 144 0 111 chr6 46313120 46313698 -103203339 + Lx2 LINE L1 6484 6997 0 4 938 195 162 0 0 chr6 46314120 46314157 -103202880 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 938 200 203 15 30 chr6 46315746 46315812 -103201225 + T-rich Low_complexity Low_complexity 2 66 0 4 938 23 33 0 0 chr6 46315812 46315842 -103201195 + AT_rich Low_complexity Low_complexity 1 30 0 4 938 315 286 26 43 chr6 46316046 46316163 -103200874 - Lx7 LINE L1 -377 7319 7205 4 938 21 0 0 0 chr6 46316240 46316261 -103200776 + AT_rich Low_complexity Low_complexity 1 21 0 4 938 1038 212 29 0 chr6 46316301 46316542 -103200495 - Lx2 LINE L1 0 6997 6750 4 938 1913 272 91 31 chr6 46316542 46316757 -103200280 - Lx7 LINE L1 -226 7234 7017 4 938 1191 54 0 0 chr6 46316757 46316904 -103200133 + B1_Mus1 SINE Alu 2 148 0 4 938 1913 259 187 63 chr6 46316904 46317514 -103199523 - Lx7 LINE L1 -654 7042 6332 4 938 308 223 165 23 chr6 46318167 46318300 -103198737 - L1M3 LINE L1 -2065 4075 3924 4 938 275 266 97 0 chr6 46318575 46318688 -103198349 + L1M3 LINE L1 4143 4266 -1874 4 938 2719 50 0 12 chr6 46318700 46319046 -103197991 + L1Md_F2 LINE L1 5245 5586 -297 4 938 7763 63 1 3 chr6 46319047 46320030 -103197007 + L1Md_F2 LINE L1 5588 6568 -14 4 938 319 246 10 29 chr6 46320398 46320495 -103196542 + ID4 SINE ID 15 105 -47 4 938 1061 283 98 4 chr6 46320582 46320848 -103196189 + MTEa LTR MaLR 28 318 -61 4 938 463 304 32 54 chr6 46320857 46321135 -103195902 - RLTR15 LTR ERVK -16 343 72 4 938 7465 90 3 9 chr6 46321150 46322182 -103194855 - L1_Mus3 LINE L1 -7 6631 5606 4 938 5911 132 83 11 chr6 46322185 46323227 -103193810 + L1_Mus3 LINE L1 4470 5586 -297 4 938 333 105 89 41 chr6 46323294 46323374 -103193663 + MTEb LTR MaLR 304 378 -1 4 938 207 0 0 0 chr6 46323559 46323582 -103193455 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 938 717 310 70 27 chr6 46323586 46324061 -103192976 + L1M3 LINE L1 5299 5793 -498 4 938 259 233 48 135 chr6 46324097 46324201 -103192836 + L1M3 LINE L1 5780 5874 -315 4 938 1088 97 0 0 chr6 46324256 46324400 -103192637 + B1_Mus1 SINE Alu 1 144 -4 4 938 439 54 27 13 chr6 46324400 46324475 -103192562 + (CAAA)n Simple_repeat Simple_repeat 1 76 0 4 938 217 164 66 0 chr6 46325322 46325383 -103191654 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 4 938 638 13 13 0 chr6 46325528 46325607 -103191430 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 938 547 316 83 10 chr6 46329119 46329311 -103187726 - B3 SINE B2 -3 213 8 4 938 468 321 43 12 chr6 46329838 46330002 -103187035 + B3 SINE B2 48 216 0 4 938 23 33 0 0 chr6 46331143 46331173 -103185864 + AT_rich Low_complexity Low_complexity 1 30 0 4 938 8938 8 0 0 chr6 46331206 46332319 -103184718 - L1Md_T LINE L1 0 6582 5470 4 938 8556 40 0 0 chr6 46332318 46333369 -103183668 - L1Md_T LINE L1 -1077 4806 3756 4 938 242 355 62 44 chr6 46333568 46333795 -103183242 + L2a LINE L2 3115 3345 -81 4 938 209 217 0 42 chr6 46334189 46334261 -103182776 + A-rich Low_complexity Low_complexity 4 72 0 4 938 301 253 42 10 chr6 46334263 46334359 -103182678 - ORR1E LTR MaLR -253 106 8 4 938 535 307 80 77 chr6 46336836 46337122 -103179915 - B4A SINE B4 -3 289 3 4 938 288 0 0 0 chr6 46337133 46337165 -103179872 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 4 938 1081 72 0 0 chr6 46337171 46337310 -103179727 - B1_Mus1 SINE Alu -7 141 3 4 938 525 270 96 16 chr6 46337553 46337741 -103179296 + B3 SINE B2 1 203 -13 4 938 201 182 0 0 chr6 46337741 46337774 -103179263 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 938 800 170 65 11 chr6 46337786 46337970 -103179067 - RMER1C Other Other -4 1338 1145 4 938 238 289 41 10 chr6 46339698 46339796 -103177241 - MTE2b LTR MaLR -1 378 278 4 938 761 177 31 0 chr6 46339786 46339916 -103177121 + B1_Mur4 SINE Alu 12 145 -5 4 938 371 303 103 21 chr6 46340107 46340252 -103176785 - MTE2b LTR MaLR -219 160 4 4 938 279 276 153 0 chr6 46340413 46340511 -103176526 - MLT1A0 LTR MaLR -7 367 255 4 938 333 290 20 80 chr6 46340574 46340724 -103176313 - MLT1A0 LTR MaLR -224 141 1 4 938 1059 70 14 0 chr6 46340961 46341103 -103175934 + B1_Mus1 SINE Alu 5 148 0 4 938 323 279 13 0 chr6 46341527 46341606 -103175431 + B4A SINE B4 3 82 -210 4 938 236 321 46 28 chr6 46341606 46341636 -103175401 + B3A SINE B2 3 113 -85 4 938 17015 20 15 0 chr6 46341636 46343638 -103173399 + L1Md_T LINE L1 3555 5586 -297 4 938 8919 6 0 3 chr6 46343638 46344637 -103172400 + L1Md_T LINE L1 5587 6582 0 4 938 1866 198 21 72 chr6 46345970 46346553 -103170484 - RLTR31_Mur LTR ERVK 0 553 1 4 938 417 54 0 0 chr6 46346942 46346998 -103170039 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 938 1744 143 18 76 chr6 46347140 46347553 -103169484 + MYSERV6-int LTR ERVK 8589 8905 -54 5 938 297 328 68 42 chr6 46347557 46347793 -103169244 + RLTR12A LTR ERVK 5 246 -322 5 938 2912 188 161 86 chr6 46348010 46348838 -103168199 + RMER19B LTR ERVK 1 890 -12 5 938 186 43 0 0 chr6 46349071 46349094 -103167943 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 938 235 277 0 0 chr6 46349266 46349331 -103167706 + (TTCA)n Simple_repeat Simple_repeat 4 68 0 5 938 189 254 0 0 chr6 46349508 46349563 -103167474 + CT-rich Low_complexity Low_complexity 4 58 0 5 938 417 352 159 21 chr6 46349605 46349982 -103167055 + Tigger10 DNA Tigger 699 1127 -716 5 938 309 109 0 0 chr6 46350200 46350246 -103166791 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 938 8513 27 1 0 chr6 46350490 46351999 -103165038 - L1Md_T LINE L1 0 6582 5073 5 938 3753 80 0 19 chr6 46352219 46352742 -103164295 - L1Md_F2 LINE L1 0 6582 6070 5 938 858 276 69 59 chr6 46353562 46354040 -103162997 - Lx9 LINE L1 0 7644 7162 5 938 1668 117 0 4 chr6 46354502 46354760 -103162277 + L1_Mus4 LINE L1 6375 6631 -5 5 938 419 313 64 97 chr6 46355089 46355418 -103161619 + LTR81B LTR ERV1? 3 320 -1073 5 938 341 252 130 9 chr6 46355769 46355877 -103161160 - HAL1-3A_ME LINE L1 -454 2404 2284 5 938 201 121 0 0 chr6 46355906 46355939 -103161098 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 938 295 290 67 72 chr6 46356332 46356540 -103160497 + Tigger15a DNA TcMar 461 667 -48 5 938 309 389 8 0 chr6 46356745 46356876 -103160161 + MIRb SINE MIR 116 247 -21 5 938 387 229 0 0 chr6 46356913 46356983 -103160054 + MIR3 SINE MIR 137 206 -2 5 938 244 219 0 0 chr6 46356983 46357024 -103160013 + Tigger15a DNA TcMar 674 714 -1 5 938 222 91 0 0 chr6 46358778 46358811 -103158226 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 5 938 225 313 159 26 chr6 46359159 46359392 -103157645 - Lx8 LINE L1 -5 7468 7205 5 938 283 258 0 6 chr6 46359414 46359498 -103157539 + Lx7 LINE L1 7051 7133 -340 5 938 24 53 0 0 chr6 46360031 46360069 -103156968 + AT_rich Low_complexity Low_complexity 1 38 0 5 938 860 264 22 76 chr6 46360618 46360974 -103156063 - RLTR15 LTR ERVK -17 342 6 5 938 198 0 0 0 chr6 46361922 46361944 -103155093 + (A)n Simple_repeat Simple_repeat 1 22 0 5 938 733 320 77 30 chr6 46363072 46363410 -103153627 - ORR1E LTR MaLR 0 359 6 5 938 444 355 59 33 chr6 46363413 46363684 -103153353 + MLT1D LTR MaLR 2 279 -226 5 938 693 307 62 101 chr6 46363690 46364078 -103152959 - MTE2b LTR MaLR -6 373 1 5 938 316 286 37 36 chr6 46364089 46364341 -103152696 + MLT1D LTR MaLR 286 627 0 5 938 217 305 72 12 chr6 46364891 46364974 -103152063 - MIRb SINE MIR -68 200 113 5 938 595 300 38 137 chr6 46365149 46365462 -103151575 + B4A SINE B4 1 282 -10 5 938 21 0 0 0 chr6 46365748 46365769 -103151268 + AT_rich Low_complexity Low_complexity 1 21 0 5 938 204 333 145 0 chr6 46365862 46366021 -103151016 + MER5A DNA MER1_type 7 188 -1 5 938 186 43 0 0 chr6 46366087 46366110 -103150927 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 5 938 468 0 0 0 chr6 46366758 46366810 -103150227 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 938 1758 303 50 50 chr6 46367391 46368138 -103148899 - Lx8 LINE L1 -312 7161 6415 5 938 425 254 108 50 chr6 46368243 46368422 -103148615 - MTEb LTR MaLR 0 379 158 5 938 801 286 48 48 chr6 46368424 46368523 -103148514 + Lx8 LINE L1 7074 7181 -292 5 938 2243 74 16 31 chr6 46368523 46368845 -103148192 - L1_Mus2 LINE L1 0 6566 6250 5 938 801 286 48 48 chr6 46368845 46369017 -103148020 + Lx8 LINE L1 7182 7345 -128 5 938 510 77 0 0 chr6 46369008 46369073 -103147964 - L1_Mus3 LINE L1 -306 6260 6196 5 938 2812 78 5 8 chr6 46369073 46369459 -103147578 + L1_Mus3 LINE L1 6254 6638 0 5 938 26 30 0 0 chr6 46369459 46369492 -103147545 + AT_rich Low_complexity Low_complexity 1 33 0 5 938 6772 49 3 21 chr6 46371646 46372514 -103144523 - L1_Mus2 LINE L1 -1 6565 5713 5 938 565 70 0 0 chr6 46372512 46372583 -103144454 + Lx2A LINE L1 5643 5713 -1295 5 938 637 252 36 0 chr6 46372619 46372758 -103144279 + B3 SINE B2 8 151 -65 5 938 246 217 0 0 chr6 46372760 46372829 -103144208 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 5 938 476 156 11 0 chr6 46372835 46372925 -103144112 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 938 227 300 42 14 chr6 46375760 46375831 -103141206 - RSINE1 SINE B4 -91 74 2 5 938 319 436 15 5 chr6 46376371 46376574 -103140463 - MLT1E1 LTR MaLR -100 580 376 5 938 346 350 102 8 chr6 46376581 46376826 -103140211 - MLT1E1 LTR MaLR -382 272 5 5 938 216 0 0 0 chr6 46377072 46377096 -103139941 + (TAGG)n Simple_repeat Simple_repeat 1 24 0 5 938 426 101 0 0 chr6 46377097 46377166 -103139871 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 938 345 62 0 0 chr6 46377381 46377429 -103139608 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 938 213 242 16 16 chr6 46377435 46377498 -103139539 + (CATA)n Simple_repeat Simple_repeat 1 63 0 5 938 216 0 0 0 chr6 46377571 46377595 -103139442 + (CAT)n Simple_repeat Simple_repeat 3 26 0 5 938 381 22 0 0 chr6 46378225 46378271 -103138766 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 938 920 194 34 153 chr6 46380207 46380560 -103136477 - RLTRETN_Mm LTR ERVK 0 322 12 5 938 1010 293 7 98 chr6 46380631 46381048 -103135989 + MTE2b LTR MaLR 1 379 0 5 938 765 50 0 19 chr6 46381293 46381396 -103135641 + B1_Mus2 SINE Alu 47 147 0 5 938 1084 190 10 0 chr6 46381796 46381996 -103135041 + URR1B DNA MER1_type 24 225 0 5 938 268 315 19 0 chr6 46382539 46382647 -103134390 + (TA)n Simple_repeat Simple_repeat 2 111 0 5 938 462 267 133 0 chr6 46382776 46382896 -103134141 - B1F SINE Alu -11 138 3 5 938 384 231 12 136 chr6 46382950 46383135 -103133902 + B3 SINE B2 1 203 -13 5 938 27 0 0 0 chr6 46383466 46383493 -103133544 + AT_rich Low_complexity Low_complexity 1 27 0 5 938 557 310 49 66 chr6 46384122 46384501 -103132536 - ORR1E LTR MaLR 0 370 3 5 938 821 240 34 0 chr6 46385924 46386132 -103130905 + B3 SINE B2 2 216 0 5 938 1569 313 73 35 chr6 46386404 46387835 -103129202 - L1_Mur3 LINE L1 -3367 2480 977 5 938 21972 115 15 16 chr6 46389693 46393227 -103123810 + L1Md_F LINE L1 1 3547 -2336 5 938 1151 75 0 0 chr6 46393227 46393374 -103123663 + B1_Mm SINE Alu 1 147 0 5 938 21972 90 1 17 chr6 46393374 46394255 -103122782 + L1Md_F LINE L1 3548 4394 -1489 5 938 864 171 159 6 chr6 46395063 46395245 -103121792 - Lx4A LINE L1 -2 7056 6847 5 938 3387 182 80 8 chr6 46395698 46396519 -103120518 - L1_Mur2 LINE L1 -3816 2061 1117 5 938 396 0 0 0 chr6 46396519 46396563 -103120474 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 938 797 211 91 88 chr6 46396563 46396804 -103120233 - L1_Mur2 LINE L1 -5970 1116 892 5 938 21 0 0 0 chr6 46397130 46397151 -103119886 + AT_rich Low_complexity Low_complexity 1 21 0 5 938 340 258 52 111 chr6 46397338 46397473 -103119564 - B1F SINE Alu -1 148 22 5 938 1013 96 7 14 chr6 46397541 46397689 -103119348 + B1_Mus1 SINE Alu 2 148 0 5 938 322 97 42 0 chr6 46397689 46397761 -103119276 + (CAAAA)n Simple_repeat Simple_repeat 1 75 0 5 938 217 148 36 24 chr6 46398067 46398150 -103118887 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 938 568 200 36 0 chr6 46398234 46398344 -103118693 - PB1D9 SINE Alu -5 115 2 5 938 3175 124 132 2 chr6 46398569 46399101 -103117936 - MT2B LTR ERVL 0 601 1 5 939 364 203 0 14 chr6 46399737 46399807 -103117230 - ORR1D2 LTR MaLR -281 89 21 5 939 183 345 97 26 chr6 46400232 46400345 -103116692 + MIR3 SINE MIR 40 160 -48 5 939 533 273 91 21 chr6 46400533 46400720 -103116317 + B3 SINE B2 3 202 -14 5 939 828 259 19 0 chr6 46401849 46402061 -103114976 + B3 SINE B2 1 216 0 5 939 227 208 0 0 chr6 46402391 46402439 -103114598 + T-rich Low_complexity Low_complexity 1 48 0 5 939 1517 70 0 0 chr6 46402467 46402667 -103114370 - L1Md_F2 LINE L1 -12 6570 6371 5 939 664 338 24 58 chr6 46403021 46403316 -103113721 + B4 SINE B4 7 291 -1 5 939 240 35 0 0 chr6 46403325 46403354 -103113683 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 939 910 296 57 69 chr6 46403614 46404003 -103113034 - MLT1B LTR MaLR -2 388 5 5 939 1068 52 7 7 chr6 46404054 46404191 -103112846 - B1_Mm SINE Alu -10 137 1 5 939 204 272 59 47 chr6 46404740 46404825 -103112212 + L2a LINE L2 3339 3424 -2 5 939 15375 89 61 1 chr6 46404853 46406930 -103110107 + L1_Mus4 LINE L1 3507 5689 -194 5 939 7763 64 0 8 chr6 46406930 46407933 -103109104 + L1Md_F2 LINE L1 5588 6582 0 5 939 15375 98 35 5 chr6 46407933 46408323 -103108714 + L1_Mus4 LINE L1 5690 6109 -527 5 939 255 152 0 0 chr6 46408323 46408369 -103108668 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 939 389 116 14 0 chr6 46408475 46408544 -103108493 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 939 234 0 0 0 chr6 46409757 46409783 -103107254 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 939 558 0 0 0 chr6 46409783 46409845 -103107192 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 939 299 292 11 0 chr6 46410883 46410972 -103106065 + A-rich Low_complexity Low_complexity 3 92 0 5 939 252 0 0 0 chr6 46413192 46413220 -103103817 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 939 387 41 0 0 chr6 46413220 46413268 -103103769 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 939 839 268 28 83 chr6 46413377 46413666 -103103371 - B4A SINE B4 -15 277 5 5 939 275 0 29 0 chr6 46413734 46413769 -103103268 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 939 508 311 89 48 chr6 46413915 46414185 -103102852 - MLT1C LTR MaLR -29 438 158 5 939 356 324 19 0 chr6 46414207 46414312 -103102725 + RSINE1 SINE B4 30 136 -29 5 939 233 262 56 46 chr6 46414338 46414446 -103102591 - MLT1C LTR MaLR -303 164 56 5 939 407 19 19 0 chr6 46414817 46414869 -103102168 + (CTA)n Simple_repeat Simple_repeat 1 53 0 5 939 270 0 0 0 chr6 46414869 46414899 -103102138 + (TAA)n Simple_repeat Simple_repeat 3 32 0 6 939 409 298 111 41 chr6 46414922 46415140 -103101897 - MER58B DNA MER1_type -3 338 105 6 939 573 214 104 55 chr6 46416184 46416347 -103100690 - RMER5 LTR ERV1 -15 519 349 6 939 2953 203 53 5 chr6 46416676 46417245 -103099792 + Lx2B LINE L1 6399 6994 -6 6 939 21 36 0 0 chr6 46417257 46417285 -103099752 + AT_rich Low_complexity Low_complexity 1 28 0 6 939 480 323 107 15 chr6 46417293 46417563 -103099474 - Lx8 LINE L1 -6 7467 7173 6 939 229 236 36 0 chr6 46418024 46418079 -103098958 + CT-rich Low_complexity Low_complexity 3 59 0 6 939 200 333 0 0 chr6 46419003 46419060 -103097977 + GA-rich Low_complexity Low_complexity 1 57 0 6 939 2444 64 29 3 chr6 46419491 46419834 -103097203 + L1_Mus3 LINE L1 6276 6627 -11 6 939 531 0 0 0 chr6 46419837 46419896 -103097141 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 6 939 203 147 0 0 chr6 46420090 46420124 -103096913 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 939 1054 273 162 26 chr6 46420290 46420753 -103096284 - RMER5 LTR ERV1 -5 529 4 6 939 448 273 9 26 chr6 46422392 46422505 -103094532 - PB1D10 SINE Alu 0 117 7 6 939 22 0 0 0 chr6 46423399 46423421 -103093616 + AT_rich Low_complexity Low_complexity 1 22 0 6 939 429 264 54 9 chr6 46423476 46423587 -103093450 - B3 SINE B2 -1 215 100 6 939 947 233 140 11 chr6 46424145 46424410 -103092627 - MTD LTR MaLR -53 366 68 6 939 24 0 0 0 chr6 46424420 46424444 -103092593 + AT_rich Low_complexity Low_complexity 1 24 0 6 939 2965 295 89 28 chr6 46424618 46424852 -103092185 - Lx7 LINE L1 -399 7297 7037 6 939 201 39 0 0 chr6 46424852 46424878 -103092159 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 939 2965 295 89 28 chr6 46424878 46425267 -103091770 - Lx7 LINE L1 -660 7036 6634 6 939 1128 62 0 14 chr6 46425267 46425414 -103091623 + B1_Mus1 SINE Alu 1 145 -3 6 939 180 0 0 0 chr6 46425414 46425434 -103091603 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 939 2965 295 89 28 chr6 46425434 46426091 -103090946 - Lx7 LINE L1 -1063 6633 5941 6 939 1064 235 168 112 chr6 46426130 46426174 -103090863 - RMER19C LTR ERVK 0 902 872 6 939 1395 80 11 0 chr6 46426174 46426362 -103090675 - B2_Mm1t SINE B2 -2 191 2 6 939 1064 235 168 112 chr6 46426362 46426464 -103090573 - RMER19C LTR ERVK -31 871 771 6 939 3814 76 28 17 chr6 46426464 46427002 -103090035 + L1_Mus1 LINE L1 6024 6567 0 6 939 1404 240 135 114 chr6 46427002 46427539 -103089498 - RMER19C LTR ERVK -132 770 1 6 939 1601 239 74 7 chr6 46427551 46428017 -103089020 - Lx7 LINE L1 -1796 5900 5409 6 939 306 305 68 54 chr6 46428155 46428377 -103088660 - L1M5 LINE L1 -832 5314 5090 6 939 26 64 0 0 chr6 46428542 46428589 -103088448 + AT_rich Low_complexity Low_complexity 1 47 0 6 939 2566 266 182 43 chr6 46428658 46429491 -103087546 - RMER1A Other Other -6 1024 58 6 939 2591 159 83 32 chr6 46429491 46429998 -103087039 - RMER16 LTR ERVK 0 533 1 6 939 2566 299 86 66 chr6 46429998 46430447 -103086590 - RMER1A Other Other -560 506 1 6 939 6680 60 0 0 chr6 46430496 46431334 -103085703 + L1Md_T LINE L1 5745 6582 0 6 939 318 308 9 27 chr6 46431943 46432053 -103084984 - B4A SINE B4 -105 187 80 6 939 544 347 51 5 chr6 46432848 46433062 -103083975 + B4A SINE B4 5 228 -64 6 939 234 154 26 167 chr6 46433596 46433674 -103083363 + B4A SINE B4 226 292 0 6 939 194 195 52 0 chr6 46433682 46433759 -103083278 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 939 453 36 0 0 chr6 46434393 46434448 -103082589 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 939 287 192 115 0 chr6 46435056 46435134 -103081903 - L1MA8 LINE L1 -30 6261 6175 6 939 208 392 13 0 chr6 46435867 46435946 -103081091 - MER5A DNA MER1_type -59 130 51 6 939 241 202 79 69 chr6 46435965 46436066 -103080971 + MLT1B LTR MaLR 69 170 -220 6 939 1069 249 55 84 chr6 46436873 46437255 -103079782 + MTE2a LTR MaLR 1 371 -8 6 939 2196 245 19 4 chr6 46437436 46437916 -103079121 - Lx6 LINE L1 -11 7449 6963 6 939 378 224 0 84 chr6 46439025 46439108 -103077929 + B4 SINE B4 1 76 -216 6 939 233 265 0 153 chr6 46439108 46439123 -103077914 + ID4 SINE ID 1 83 0 6 939 243 292 111 0 chr6 46439522 46439594 -103077443 + B4 SINE B4 1 80 -212 6 939 297 0 0 0 chr6 46439857 46439890 -103077147 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 939 367 279 35 56 chr6 46440530 46440673 -103076364 + B4 SINE B4 101 246 -46 6 939 241 211 31 39 chr6 46440627 46440755 -103076282 - RMER17A2 LTR ERVK -507 399 273 6 939 334 234 12 38 chr6 46440704 46440784 -103076253 + B4 SINE B4 215 292 0 6 939 387 297 49 92 chr6 46441770 46441933 -103075104 + ID_B1 SINE B4 1 156 -68 6 939 473 302 24 36 chr6 46441947 46442112 -103074925 + RSINE1 SINE B4 3 165 0 6 939 432 0 0 0 chr6 46443536 46443584 -103073453 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 939 358 261 70 0 chr6 46443586 46443704 -103073333 + HAL1-3A_ME LINE L1 1975 2111 -747 6 939 382 250 45 27 chr6 46444961 46445072 -103071965 + PB1D7 SINE Alu 7 119 -1 6 939 8006 15 0 0 chr6 46445340 46446251 -103070786 - L1Md_A LINE L1 0 6582 5672 6 939 250 281 0 0 chr6 46447186 46447250 -103069787 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 939 21 0 0 0 chr6 46447268 46447289 -103069748 + AT_rich Low_complexity Low_complexity 1 21 0 6 939 718 311 23 53 chr6 46447290 46447552 -103069485 - B4 SINE B4 -37 255 2 6 939 844 221 86 9 chr6 46447609 46447842 -103069195 - Lx3C LINE L1 -2 6974 6724 6 939 933 55 79 0 chr6 46448823 46448950 -103068087 + B1_Mus1 SINE Alu 10 146 -2 6 939 626 233 47 20 chr6 46448950 46448969 -103068068 + B4 SINE B4 94 243 -49 6 939 847 219 25 30 chr6 46449640 46449671 -103067366 + URR1A DNA MER1_type 29 54 -172 6 939 4267 74 5 5 chr6 46449671 46450252 -103066785 - L1_Mus3 LINE L1 -2 6636 6056 6 939 847 219 25 30 chr6 46450252 46450418 -103066619 + URR1A DNA MER1_type 55 225 -1 6 939 301 327 62 62 chr6 46450418 46450575 -103066462 - MLT1A1 LTR MaLR -248 160 4 6 939 4435 168 44 73 chr6 46450595 46451524 -103065513 - RMER19B LTR ERVK 0 902 1 6 939 217 208 0 40 chr6 46451530 46451580 -103065457 + (TATG)n Simple_repeat Simple_repeat 1 48 0 6 939 259 113 38 0 chr6 46451638 46451691 -103065346 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 939 267 287 206 32 chr6 46452595 46452721 -103064316 - MamRep605 Unknown Unknown -38 838 691 6 939 234 296 135 8 chr6 46452753 46452879 -103064158 - MamRep605 Unknown Unknown -237 639 498 6 939 576 294 25 10 chr6 46452885 46453081 -103063956 - MamRep605 Unknown Unknown -259 617 419 6 939 221 0 0 33 chr6 46453404 46453434 -103063603 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 939 333 0 0 0 chr6 46453641 46453678 -103063359 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 939 26 30 0 0 chr6 46454847 46454880 -103062157 + AT_rich Low_complexity Low_complexity 1 33 0 6 939 2888 205 68 11 chr6 46455018 46455536 -103061501 + RMER1C Other Other 686 1242 -100 6 939 572 156 46 0 chr6 46455536 46455645 -103061392 - Lx2 LINE L1 -1 6996 6883 6 939 2888 205 68 11 chr6 46455645 46455747 -103061290 + RMER1C Other Other 1243 1341 -1 6 939 206 32 32 0 chr6 46457179 46457210 -103059827 + (TTG)n Simple_repeat Simple_repeat 1 32 0 6 939 485 164 29 0 chr6 46457268 46457372 -103059665 + Lx5 LINE L1 6941 7047 -3 6 939 21 0 0 0 chr6 46457372 46457393 -103059644 + AT_rich Low_complexity Low_complexity 1 21 0 6 939 327 262 56 84 chr6 46457539 46457718 -103059319 - Lx8 LINE L1 0 7473 7300 6 939 441 36 0 0 chr6 46457941 46457996 -103059041 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 939 288 53 0 0 chr6 46458083 46458121 -103058916 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 6 939 23 0 0 0 chr6 46458146 46458169 -103058868 + AT_rich Low_complexity Low_complexity 1 23 0 6 939 1259 256 125 19 chr6 46458532 46459118 -103057919 - L1MA6 LINE L1 0 6300 5653 6 939 322 258 10 0 chr6 46459120 46459217 -103057820 - L1MA9 LINE L1 -42 6270 6173 6 939 214 279 19 9 chr6 46459515 46459620 -103057417 + (TA)n Simple_repeat Simple_repeat 1 106 0 6 939 854 272 189 10 chr6 46459669 46459970 -103057067 - MTE2b LTR MaLR -23 356 2 6 939 209 321 0 0 chr6 46460355 46460411 -103056626 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 939 256 269 0 15 chr6 46460694 46460762 -103056275 + MLT1B LTR MaLR 7 73 -394 6 939 715 345 22 0 chr6 46460815 46461041 -103055996 + MLT1B LTR MaLR 155 385 -5 6 939 810 274 48 42 chr6 46461568 46461857 -103055180 - MLT1B LTR MaLR -99 291 1 6 939 440 305 39 88 chr6 46462240 46462445 -103054592 + B3A SINE B2 4 198 0 6 939 243 282 40 113 chr6 46462937 46463061 -103053976 - LTR88b LTR Gypsy? -15 822 708 6 939 264 290 29 123 chr6 46463202 46463446 -103053591 - L1ME3A LINE L1 -92 6081 5861 6 939 901 289 17 10 chr6 46464108 46464398 -103052639 - Lx9 LINE L1 -156 7488 7197 6 939 2350 64 23 3 chr6 46464610 46464943 -103052094 + L1_Mus1 LINE L1 6246 6637 -1 6 939 497 16 0 16 chr6 46466570 46466633 -103050404 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 6 939 1033 81 0 36 chr6 46467064 46467231 -103049806 - L1Md_F2 LINE L1 0 6582 6422 6 939 438 20 0 0 chr6 46467737 46467788 -103049249 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 939 671 306 78 78 chr6 46467841 46468110 -103048927 - B4A SINE B4 -16 276 8 6 939 418 189 69 34 chr6 46468740 46468915 -103048122 + RMER17C LTR ERVK 97 277 -133 6 939 238 258 75 60 chr6 46469164 46469254 -103047783 + PB1D9 SINE Alu 3 113 -7 6 939 25 31 0 0 chr6 46469301 46469333 -103047704 + AT_rich Low_complexity Low_complexity 1 32 0 6 939 328 302 22 4 chr6 46470173 46470278 -103046759 - MLT1E2 LTR MaLR -9 618 527 6 939 2070 142 3 3 chr6 46470711 46471029 -103046008 - ORR1A2 LTR MaLR -6 321 4 6 939 327 328 72 30 chr6 46471037 46471273 -103045764 - MLT2B1 LTR ERVL -274 246 1 6 939 1363 189 93 0 chr6 46471748 46472028 -103045009 - RMER19B LTR ERVK -113 789 484 6 939 458 206 88 6 chr6 46472027 46472198 -103044839 - RMER19B LTR ERVK -753 149 4 6 939 402 333 48 20 chr6 46473355 46473502 -103043535 + B4 SINE B4 20 170 -122 6 939 210 238 12 0 chr6 46473601 46473694 -103043343 + (CA)n Simple_repeat Simple_repeat 1 94 0 7 939 1070 301 36 65 chr6 46473779 46474163 -103042874 - MTE2a LTR MaLR -1 378 6 7 939 255 93 0 0 chr6 46474566 46474609 -103042428 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 939 592 301 30 0 chr6 46474960 46475126 -103041911 + ID_B1 SINE B4 33 203 -21 7 939 603 0 0 0 chr6 46475126 46475193 -103041844 + (TA)n Simple_repeat Simple_repeat 1 67 0 7 939 221 136 0 43 chr6 46475196 46475242 -103041795 + A-rich Low_complexity Low_complexity 3 46 0 7 939 24 53 0 0 chr6 46475571 46475609 -103041428 + AT_rich Low_complexity Low_complexity 1 38 0 7 939 1157 232 12 4 chr6 46475834 46476081 -103040956 - MTE2a LTR MaLR -4 375 127 7 939 590 284 26 26 chr6 46476111 46476306 -103040731 + B3A SINE B2 2 196 -2 7 939 1877 9 0 0 chr6 46476709 46476924 -103040113 + L1_Mm LINE L1 2419 2633 -3250 7 939 261 0 0 0 chr6 46476988 46477017 -103040020 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 939 235 313 132 0 chr6 46480800 46480883 -103036154 + B1F1 SINE Alu 31 124 -25 7 939 26005 9 0 0 chr6 46480884 46483852 -103033185 + L1Md_A LINE L1 2619 5586 -297 7 939 8845 13 0 0 chr6 46483852 46484848 -103032189 + L1Md_A LINE L1 5587 6582 0 7 939 654 151 0 0 chr6 46485060 46485199 -103031838 + CT-rich Low_complexity Low_complexity 2 140 0 7 939 317 182 0 53 chr6 46485172 46485323 -103031714 + (TCTCTG)n Simple_repeat Simple_repeat 4 146 0 7 939 226 241 0 17 chr6 46485335 46485394 -103031643 + CT-rich Low_complexity Low_complexity 3 60 0 7 939 21 0 0 0 chr6 46485828 46485849 -103031188 + AT_rich Low_complexity Low_complexity 1 21 0 7 939 471 262 129 33 chr6 46486758 46486999 -103030038 + Lx8 LINE L1 7154 7417 -56 7 939 30 59 0 0 chr6 46487044 46487095 -103029942 + AT_rich Low_complexity Low_complexity 1 51 0 7 939 21 36 0 0 chr6 46487123 46487151 -103029886 + AT_rich Low_complexity Low_complexity 1 28 0 7 939 441 0 0 0 chr6 46487234 46487283 -103029754 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 939 4683 144 20 87 chr6 46487283 46488250 -103028787 - RLTR13D6 LTR ERVK 0 902 1 7 939 1193 55 4 27 chr6 46488251 46488513 -103028524 + (CA)n Simple_repeat Simple_repeat 1 256 0 7 939 940 296 65 27 chr6 46489584 46489955 -103027082 - MER44B DNA MER2_type -123 427 43 7 939 23 0 0 0 chr6 46490096 46490119 -103026918 + AT_rich Low_complexity Low_complexity 1 23 0 7 939 211 21 82 20 chr6 46490157 46490206 -103026831 + (TTA)n Simple_repeat Simple_repeat 2 53 0 7 939 1227 162 4 63 chr6 46490206 46490443 -103026594 - Lx3C LINE L1 -9 6967 6745 7 939 213 121 0 0 chr6 46490457 46490490 -103026547 + (A)n Simple_repeat Simple_repeat 1 33 0 7 939 204 67 0 0 chr6 46490726 46490756 -103026281 + (CAAAAA)n Simple_repeat Simple_repeat 4 33 0 7 939 3816 89 32 2 chr6 46491343 46491870 -103025167 - Lx3_Mus LINE L1 -8 7001 6459 7 939 1757 202 38 35 chr6 46492045 46492333 -103024704 + ORR1D2 LTR MaLR 1 295 -75 7 939 3292 43 0 8 chr6 46492333 46492732 -103024305 - MTA_Mm LTR MaLR 0 396 1 7 939 1757 202 38 35 chr6 46492732 46492812 -103024225 + ORR1D2 LTR MaLR 296 370 0 7 939 212 0 36 0 chr6 46493238 46493266 -103023771 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 939 369 0 0 0 chr6 46493266 46493306 -103023731 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 939 753 355 139 12 chr6 46493331 46493947 -103023090 - L2 LINE L2 -529 2890 2200 7 939 240 35 0 0 chr6 46493947 46493976 -103023061 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 939 753 355 139 12 chr6 46493976 46494023 -103023014 - L2 LINE L2 -1220 2199 2143 7 939 491 338 119 13 chr6 46494134 46494512 -103022525 - L2 LINE L2 -1539 1880 1463 7 939 369 0 0 0 chr6 46494549 46494590 -103022447 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 939 21 36 0 0 chr6 46496120 46496148 -103020889 + AT_rich Low_complexity Low_complexity 1 28 0 7 939 254 342 0 0 chr6 46496555 46496631 -103020406 + ID4 SINE ID 5 80 -3 7 939 255 61 0 0 chr6 46496898 46496931 -103020106 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 939 316 263 119 93 chr6 46497758 46497951 -103019086 - L1MCa LINE L1 -5944 807 610 7 939 362 278 117 45 chr6 46498086 46498279 -103018758 - L1MCa LINE L1 -6325 426 244 7 939 279 0 0 0 chr6 46498491 46498522 -103018515 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 939 246 32 0 0 chr6 46498540 46498571 -103018466 + (TTG)n Simple_repeat Simple_repeat 2 32 0 7 939 280 274 36 0 chr6 46498842 46498926 -103018111 + RSINE1 SINE B4 2 88 -77 7 939 264 191 32 0 chr6 46499354 46499417 -103017620 - L1MB5 LINE L1 -231 5943 5879 7 939 764 193 181 6 chr6 46501050 46501232 -103015805 - B3 SINE B2 0 216 3 1 939 6820 89 28 14 chr6 46501257 46502967 -103014070 - L1_Mus2 LINE L1 -1 6565 4835 2 939 241 368 41 35 chr6 46504033 46504205 -103012832 + MER45A DNA Tip100 2 174 -4 3 939 7534 147 34 19 chr6 46505032 46507053 -103009984 - Lx2B LINE L1 -3 6997 4960 4 939 253 214 0 91 chr6 46507579 46507656 -103009381 - Lx6 LINE L1 -1321 6139 6070 5 939 2503 183 22 18 chr6 46507682 46508166 -103008871 - Lx6 LINE L1 -108 5772 5281 5 939 7080 145 38 6 chr6 46508166 46509360 -103007677 - Lx2B LINE L1 -2 6998 5767 6 939 2503 183 22 18 chr6 46509360 46509426 -103007611 - Lx6 LINE L1 -600 5280 5220 5 939 200 325 152 8 chr6 46510286 46510404 -103006633 + L2c LINE L2 3032 3166 -221 7 939 494 231 148 37 chr6 46510426 46510561 -103006476 + MER44D DNA MER2_type 1 150 -555 8 939 227 146 18 0 chr6 46510606 46510661 -103006376 + CT-rich Low_complexity Low_complexity 1 56 0 9 939 296 226 247 19 chr6 46510676 46510761 -103006276 + MER44D DNA MER2_type 490 610 -95 8 939 420 20 0 0 chr6 46510761 46510810 -103006227 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 939 296 226 247 19 chr6 46510810 46510882 -103006155 + MER44D DNA MER2_type 611 682 -23 8 939 459 0 0 0 chr6 46512195 46512246 -103004791 + (CAG)n Simple_repeat Simple_repeat 1 51 0 1 939 182 37 37 0 chr6 46512799 46512826 -103004211 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 939 437 315 139 32 chr6 46512832 46513271 -103003766 - L1ME1 LINE L1 -109 6070 5585 1 939 297 0 0 0 chr6 46513271 46513304 -103003733 + (T)n Simple_repeat Simple_repeat 1 33 0 1 939 276 345 9 0 chr6 46513372 46513488 -103003549 - L1ME1 LINE L1 -713 5466 5350 1 939 541 135 53 13 chr6 46513709 46513826 -103003211 + L1_Mus4 LINE L1 6481 6600 -36 1 939 1959 89 0 15 chr6 46513826 46514098 -103002939 + L1_Mus1 LINE L1 6299 6566 -1 1 939 541 135 53 13 chr6 46514098 46514130 -103002907 + L1_Mus4 LINE L1 6601 6635 -1 1 939 34 0 0 0 chr6 46514243 46514277 -103002760 + AT_rich Low_complexity Low_complexity 1 34 0 1 939 1459 289 65 34 chr6 46514856 46515838 -103001199 - L1MD2 LINE L1 -362 5997 4982 1 939 306 73 0 0 chr6 46515838 46515879 -103001158 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1 939 227 325 91 54 chr6 46515879 46515996 -103001041 - L1MD2 LINE L1 -1165 4981 4870 1 939 399 388 83 25 chr6 46516774 46517173 -102999864 - MT2A LTR ERVL -76 457 36 2 939 409 341 17 57 chr6 46517028 46517205 -102999832 - MTEa LTR MaLR -209 170 1 2 939 388 202 9 19 chr6 46517564 46517670 -102999367 + (CATA)n Simple_repeat Simple_repeat 4 108 0 2 939 414 0 0 0 chr6 46517670 46517716 -102999321 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 939 392 362 58 0 chr6 46517822 46517960 -102999077 + RSINE1 SINE B4 1 146 -19 2 939 456 91 0 0 chr6 46517961 46518027 -102999010 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 939 920 35 0 0 chr6 46519240 46519356 -102997681 - L1Md_F2 LINE L1 -296 6286 6171 2 939 1817 95 34 44 chr6 46519358 46519656 -102997381 + L1Md_F2 LINE L1 6276 6570 -12 2 939 588 29 0 0 chr6 46519676 46519746 -102997291 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 2 939 341 357 10 0 chr6 46522130 46522228 -102994809 - Tigger7 DNA MER2_type 0 2491 2393 2 939 2959 38 19 11 chr6 46522289 46522660 -102994377 - L1Md_F2 LINE L1 -2 6580 6207 2 939 2812 59 3 3 chr6 46522652 46523011 -102994026 - L1_Mus1 LINE L1 -3 6564 6206 3 939 2767 40 0 0 chr6 46523011 46523360 -102993677 + L1_Mus1 LINE L1 5772 6120 -447 3 939 1055 300 38 38 chr6 46523406 46523752 -102993285 - Tigger7 DNA MER2_type -2145 346 1 2 939 201 258 95 63 chr6 46523920 46524015 -102993022 + MIR3 SINE MIR 78 175 -33 3 939 247 283 164 36 chr6 46524135 46524300 -102992737 - MIR3 SINE MIR -21 187 2 3 939 259 304 22 15 chr6 46526929 46527066 -102989971 + L1MB1 LINE L1 6017 6154 -35 3 939 204 263 0 17 chr6 46527066 46527124 -102989913 + A-rich Low_complexity Low_complexity 3 59 0 3 117 33921 35 0 0 chr6 46527143 46532603 -102984434 + L1Md_T LINE L1 33 5589 -297 3 940 9043 5 0 0 chr6 46532603 46533599 -102983438 + L1Md_T LINE L1 5590 6585 0 3 940 226 383 46 101 chr6 46534523 46534741 -102982296 - MamSINE1 SINE tRNA -68 222 17 3 940 557 83 12 0 chr6 46534811 46534895 -102982142 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 3 940 486 0 0 0 chr6 46536211 46536265 -102980772 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 3 940 501 283 46 46 chr6 46536909 46537083 -102979954 + B4A SINE B4 117 290 -2 3 940 282 29 0 0 chr6 46537127 46537162 -102979875 + (ATTG)n Simple_repeat Simple_repeat 3 37 0 4 940 270 295 51 0 chr6 46537187 46537265 -102979772 + PB1D10 SINE Alu 4 85 -32 4 940 270 345 0 0 chr6 46537543 46537627 -102979410 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 940 2151 135 0 0 chr6 46537709 46538028 -102979009 - ORR1A2 LTR MaLR -8 319 1 4 940 1131 229 92 0 chr6 46538154 46538394 -102978643 - ORR1C2 LTR MaLR 0 384 123 4 940 273 146 0 0 chr6 46538422 46538470 -102978567 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 940 750 43 0 0 chr6 46538527 46538621 -102978416 + (TTC)n Simple_repeat Simple_repeat 2 95 0 4 940 12308 11 1 0 chr6 46538623 46540778 -102976259 - L1Md_A LINE L1 0 6582 4427 4 940 39298 9 2 6 chr6 46540773 46547382 -102969655 - L1Md_A LINE L1 0 6582 1 4 940 600 143 0 0 chr6 46547385 46547525 -102969512 + (TTG)n Simple_repeat Simple_repeat 2 141 0 4 940 1103 108 17 0 chr6 46547526 46547702 -102969335 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 5 940 1419 50 0 0 chr6 46547718 46547898 -102969139 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 940 787 123 0 31 chr6 46547898 46548057 -102968980 + CT-rich Low_complexity Low_complexity 6 159 0 5 940 393 22 0 0 chr6 46548834 46548880 -102968157 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 5 940 979 111 0 0 chr6 46548881 46549016 -102968021 - B1_Mus2 SINE Alu -12 135 1 5 940 27 73 0 0 chr6 46549026 46549081 -102967956 + AT_rich Low_complexity Low_complexity 1 55 0 5 940 475 308 87 16 chr6 46549115 46549300 -102967737 - B3A SINE B2 0 198 1 5 940 996 300 73 52 chr6 46550159 46550567 -102966470 - MTD LTR MaLR -2 417 1 5 940 323 308 0 0 chr6 46551997 46552075 -102964962 + ID4 SINE ID 3 80 -3 5 940 22 0 0 0 chr6 46552262 46552284 -102964753 + AT_rich Low_complexity Low_complexity 1 22 0 5 940 35 24 0 0 chr6 46552296 46552338 -102964699 + AT_rich Low_complexity Low_complexity 1 42 0 6 940 744 12 0 0 chr6 46552574 46552659 -102964378 + (GAA)n Simple_repeat Simple_repeat 2 86 0 6 940 614 326 66 58 chr6 46552660 46553008 -102964029 - MLT1B LTR MaLR -39 351 1 6 940 1159 259 55 81 chr6 46553088 46553470 -102963567 + MTEa LTR MaLR 1 372 -7 6 940 592 235 48 6 chr6 46554193 46554373 -102962664 - ORR1D2 LTR MaLR -2 368 172 6 940 3728 42 44 0 chr6 46554373 46554828 -102962209 + L1Md_F2 LINE L1 6096 6570 -12 6 940 504 282 120 22 chr6 46554828 46554877 -102962160 - ORR1D2 LTR MaLR -188 171 109 6 940 22 56 0 0 chr6 46557342 46557378 -102959659 + AT_rich Low_complexity Low_complexity 1 36 0 6 940 1211 239 67 25 chr6 46557916 46558272 -102958765 - ORR1D1 LTR MaLR -1 373 3 6 940 541 296 50 10 chr6 46558994 46559192 -102957845 - B3 SINE B2 -10 206 1 6 940 22 70 0 0 chr6 46559317 46559360 -102957677 + AT_rich Low_complexity Low_complexity 1 43 0 6 940 1927 237 52 29 chr6 46559360 46559466 -102957571 - Lx9 LINE L1 0 7644 7518 7 940 297 0 0 0 chr6 46559466 46559499 -102957538 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 940 1927 249 49 29 chr6 46559499 46559998 -102957039 - Lx9 LINE L1 -127 7517 6897 7 940 306 194 0 0 chr6 46560023 46560090 -102956947 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 940 3187 31 39 0 chr6 46560521 46560902 -102956135 - MTA_Mm LTR MaLR 0 396 1 7 940 27 0 0 0 chr6 46561918 46561945 -102955092 + AT_rich Low_complexity Low_complexity 1 27 0 7 940 471 35 0 0 chr6 46563465 46563522 -102953515 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 940 577 297 92 94 chr6 46564448 46565013 -102952024 + L1MC5 LINE L1 7347 7910 -51 7 940 297 372 9 38 chr6 46565529 46565635 -102951402 + MER45A DNA Tip100 33 135 -43 7 940 1942 234 73 13 chr6 46565645 46566096 -102950941 - Lx6 LINE L1 -235 7225 6748 7 940 1976 210 121 46 chr6 46566152 46566712 -102950325 + RMER13B LTR ERVK 284 885 -23 7 940 329 275 57 16 chr6 46566742 46566864 -102950173 - Lx8 LINE L1 -106 7367 7241 8 940 368 59 0 0 chr6 46566865 46566916 -102950121 + B1_Mm SINE Alu 97 147 0 8 940 644 293 58 50 chr6 46566921 46567180 -102949857 - Lx8 LINE L1 -224 7249 6989 8 940 681 24 0 0 chr6 46567202 46567285 -102949752 + (TC)n Simple_repeat Simple_repeat 1 83 0 8 940 414 0 0 0 chr6 46568027 46568073 -102948964 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 940 198 103 0 0 chr6 46568113 46568142 -102948895 + (TATG)n Simple_repeat Simple_repeat 4 32 0 8 940 950 284 36 0 chr6 46568282 46568507 -102948530 - B4A SINE B4 -58 234 2 8 940 4453 194 69 36 chr6 46568549 46569510 -102947527 - Lx5 LINE L1 -2 7048 6057 8 940 1762 154 114 0 chr6 46569509 46569859 -102947178 + Lx5 LINE L1 5668 6057 -993 8 940 25 0 0 0 chr6 46569878 46569903 -102947134 + AT_rich Low_complexity Low_complexity 1 25 0 8 940 450 0 0 0 chr6 46569956 46570006 -102947031 + (TA)n Simple_repeat Simple_repeat 1 50 0 8 940 232 345 23 0 chr6 46570194 46570281 -102946756 - RSINE1 SINE B4 -74 91 3 8 940 902 177 97 9 chr6 46570385 46570613 -102946424 - Lx7 LINE L1 0 7696 7449 9 940 195 42 0 0 chr6 46570656 46570680 -102946357 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 9 940 285 29 0 0 chr6 46570691 46570725 -102946312 + (TA)n Simple_repeat Simple_repeat 1 34 0 9 940 24 0 0 0 chr6 46570745 46570769 -102946268 + AT_rich Low_complexity Low_complexity 1 24 0 9 940 833 115 0 0 chr6 46571124 46571254 -102945783 - Lx2 LINE L1 0 6997 6868 9 940 396 129 0 0 chr6 46571254 46571316 -102945721 + Lx2B LINE L1 6575 6636 -364 9 940 201 244 0 0 chr6 46571595 46571636 -102945401 + CT-rich Low_complexity Low_complexity 6 46 0 9 940 505 158 61 68 chr6 46572983 46573054 -102943983 + Lx7 LINE L1 7516 7586 -110 9 940 372 59 0 0 chr6 46573054 46573105 -102943932 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 9 940 505 158 61 68 chr6 46573105 46573196 -102943841 + Lx7 LINE L1 7587 7677 -19 9 940 381 317 21 21 chr6 46573442 46573584 -102943453 + L3 LINE CR1 2053 2194 -2295 9 940 272 284 0 0 chr6 46573796 46573863 -102943174 - ID4 SINE ID 0 83 17 1 940 789 304 10 19 chr6 46574457 46574665 -102942372 + B3 SINE B2 3 208 -8 1 940 1024 339 52 29 chr6 46574739 46575253 -102941784 - LTR80B LTR ERVL -6 578 53 1 940 619 153 13 20 chr6 46575258 46575411 -102941626 + CT-rich Low_complexity Low_complexity 1 152 0 1 940 1794 236 24 40 chr6 46576053 46576477 -102940560 - MTD LTR MaLR -2 417 1 1 940 659 290 32 69 chr6 46577134 46577323 -102939714 + B3A SINE B2 1 182 -16 1 940 229 358 34 68 chr6 46577336 46577513 -102939524 + MamRep137 DNA TcMar? 75 245 -199 1 940 192 40 0 0 chr6 46577671 46577696 -102939341 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 940 546 151 25 8 chr6 46578151 46578271 -102938766 + GA-rich Low_complexity Low_complexity 4 125 0 1 940 917 160 3 17 chr6 46578485 46578806 -102938231 + CT-rich Low_complexity Low_complexity 1 316 0 1 940 279 54 0 0 chr6 46578810 46578847 -102938190 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 940 311 335 36 140 chr6 46579966 46580129 -102936908 + Tigger10 DNA Tigger 109 248 -1595 1 940 630 291 19 0 chr6 46580129 46580287 -102936750 + RSINE1 SINE B4 2 162 -3 1 940 311 335 36 140 chr6 46580287 46580536 -102936501 + Tigger10 DNA Tigger 249 478 -1365 1 940 575 322 40 76 chr6 46580748 46580997 -102936040 + B4A SINE B4 2 241 -51 1 940 398 345 78 0 chr6 46580988 46581104 -102935933 + RSINE1 SINE B4 5 129 -36 1 940 949 218 21 11 chr6 46582072 46582262 -102934775 + B3 SINE B2 23 214 -2 1 940 3170 39 3 0 chr6 46582376 46582762 -102934275 - L1Md_F2 LINE L1 -2 6580 6194 1 940 23 54 0 0 chr6 46583075 46583112 -102933925 + AT_rich Low_complexity Low_complexity 1 37 0 1 940 381 152 19 9 chr6 46583214 46583320 -102933717 + (TA)n Simple_repeat Simple_repeat 1 107 0 1 940 234 105 0 0 chr6 46585504 46585542 -102931495 + (CATA)n Simple_repeat Simple_repeat 4 41 0 1 940 2638 203 36 33 chr6 46586691 46587272 -102929765 - Lx5 LINE L1 0 7050 6468 1 940 1079 268 112 56 chr6 46588308 46588830 -102928207 + RMER13A LTR ERVK 4 577 -331 1 940 1426 65 16 0 chr6 46589197 46589382 -102927655 - B2_Mm2 SINE B2 -6 189 2 1 940 332 344 52 30 chr6 46589659 46589926 -102927111 - L1ME4a LINE L1 -202 5922 5650 1 940 1145 302 25 4 chr6 46590106 46590385 -102926652 - B4 SINE B4 0 292 8 1 940 191 380 36 24 chr6 46590644 46590811 -102926226 + MIR SINE MIR 34 202 -60 1 940 340 272 73 72 chr6 46591403 46591649 -102925388 + L1MC LINE L1 4341 4588 -1558 1 940 6436 91 9 20 chr6 46591665 46592592 -102924445 - L1_Mus4 LINE L1 0 6636 5721 1 940 26 93 0 0 chr6 46592753 46592828 -102924209 + AT_rich Low_complexity Low_complexity 1 75 0 1 940 527 329 130 30 chr6 46594698 46595130 -102921907 + L2 LINE L2 2606 3080 -339 1 940 692 281 63 66 chr6 46595491 46595792 -102921245 + RMER15 LTR ERVL 276 575 0 1 940 237 380 43 17 chr6 46595843 46595958 -102921079 + MLT1A0 LTR MaLR 124 241 -124 1 940 1271 174 43 19 chr6 46596081 46596339 -102920698 - Lx9 LINE L1 -391 7253 6990 1 940 1026 184 382 14 chr6 46596332 46596609 -102920428 + Lx9 LINE L1 7265 7643 -1 1 940 226 246 0 0 chr6 46596922 46596979 -102920058 + Charlie22a DNA MER1_type 345 401 -90 1 940 202 318 58 12 chr6 46597060 46597146 -102919891 + L3 LINE CR1 3863 3952 -537 1 940 2088 122 91 8 chr6 46597844 46598208 -102918829 + ORR1B1 LTR MaLR 1 394 0 1 940 21 0 0 0 chr6 46598464 46598485 -102918552 + AT_rich Low_complexity Low_complexity 1 21 0 1 940 5500 65 17 4 chr6 46598510 46599234 -102917803 - L1Md_F2 LINE L1 0 6582 5850 1 940 360 133 0 0 chr6 46599769 46599829 -102917208 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 940 2433 176 7 5 chr6 46600520 46600932 -102916105 + MTC LTR MaLR 1 413 -8 1 940 243 0 0 0 chr6 46601140 46601167 -102915870 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 940 231 287 72 24 chr6 46601260 46601385 -102915652 - L1M2 LINE L1 -468 5832 5702 1 940 25 0 0 0 chr6 46601477 46601502 -102915535 + AT_rich Low_complexity Low_complexity 1 25 0 1 940 387 244 0 0 chr6 46601560 46601650 -102915387 + L1M2 LINE L1 3774 3863 -2280 1 940 271 44 44 0 chr6 46601655 46601700 -102915337 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 940 1000 179 20 77 chr6 46602499 46602747 -102914290 + Lx4B LINE L1 6807 7040 -18 1 940 306 0 0 0 chr6 46602747 46602781 -102914256 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1 940 22 56 0 0 chr6 46602859 46602895 -102914142 + AT_rich Low_complexity Low_complexity 1 36 0 1 940 733 206 104 19 chr6 46603127 46603369 -102913668 + ORR1D1 LTR MaLR 6 309 -65 1 940 24 53 0 0 chr6 46605788 46605826 -102911211 + AT_rich Low_complexity Low_complexity 1 38 0 1 940 21 36 0 0 chr6 46606216 46606244 -102910793 + AT_rich Low_complexity Low_complexity 1 28 0 1 940 443 33 16 0 chr6 46606827 46606888 -102910149 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 940 199 360 113 43 chr6 46606952 46607254 -102909783 - L2 LINE L2 -534 2885 2563 1 940 523 338 7 7 chr6 46607624 46607764 -102909273 + RSINE1 SINE B4 12 151 -14 1 940 635 67 11 0 chr6 46607806 46607895 -102909142 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 940 645 360 33 17 chr6 46609580 46609820 -102907217 - B4A SINE B4 -4 288 45 1 940 23 0 0 0 chr6 46610438 46610461 -102906576 + AT_rich Low_complexity Low_complexity 1 23 0 1 940 240 342 49 24 chr6 46610967 46611213 -102905824 - L1M7 LINE L1 -4514 1704 1453 1 940 2342 247 23 9 chr6 46611543 46612067 -102904970 + Lx6 LINE L1 6753 7283 -177 1 940 216 97 0 0 chr6 46612077 46612108 -102904929 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 1 940 349 260 21 0 chr6 46612146 46612242 -102904795 + Lx7 LINE L1 7189 7286 -410 1 940 193 120 60 0 chr6 46612284 46612334 -102904703 + (TTGG)n Simple_repeat Simple_repeat 2 54 0 1 940 498 315 127 29 chr6 46612505 46612780 -102904257 - MTD LTR MaLR -117 302 1 1 940 459 279 77 38 chr6 46612779 46612962 -102904075 - MTD-int LTR MaLR 0 1580 1391 1 940 2185 191 8 39 chr6 46613006 46613474 -102903563 + L1_Mur3 LINE L1 5420 5873 -7 1 940 1419 288 68 16 chr6 46613490 46614032 -102903005 + Lx6 LINE L1 6509 7456 -4 1 940 761 301 67 94 chr6 46614034 46614686 -102902351 - MTD-int LTR MaLR -690 1273 296 1 940 490 171 0 0 chr6 46614693 46614781 -102902256 + L1_Mur2 LINE L1 4898 4985 -892 1 940 891 297 75 58 chr6 46614784 46614834 -102902203 - L1MEe LINE L1 -1947 4435 4390 1 940 513 0 0 0 chr6 46614834 46614891 -102902146 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 940 891 297 75 58 chr6 46614891 46615533 -102901504 - L1MEe LINE L1 -1993 4389 3705 1 940 704 33 0 0 chr6 46615533 46615624 -102901413 - L1_Mus2 LINE L1 0 6566 6476 1 940 891 297 75 58 chr6 46615624 46615990 -102901047 - L1MEe LINE L1 -2678 3704 3358 1 940 408 301 76 11 chr6 46616058 46616243 -102900794 - L1MEe LINE L1 -3906 2496 2297 1 940 1059 290 30 30 chr6 46616379 46616809 -102900228 - Lx8 LINE L1 -8 7465 7036 1 940 192 40 0 0 chr6 46617742 46617767 -102899270 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 940 237 364 18 27 chr6 46618650 46618760 -102898277 + MER103 DNA DNA 10 118 -48 1 940 25 31 0 0 chr6 46618906 46618938 -102898099 + AT_rich Low_complexity Low_complexity 1 32 0 1 940 1440 188 100 63 chr6 46619793 46619840 -102897197 - ORR1C1 LTR MaLR 0 378 321 1 940 5112 27 0 7 chr6 46619840 46620444 -102896593 - L1Md_F3 LINE L1 0 6584 5985 1 940 1440 188 100 63 chr6 46620444 46620747 -102896290 - ORR1C1 LTR MaLR -58 320 15 1 940 288 352 133 11 chr6 46620736 46620917 -102896120 - MLT1L LTR MaLR -404 206 4 1 940 240 346 10 0 chr6 46622212 46622316 -102894721 - MARNA DNA Mariner -226 360 256 1 940 225 178 0 0 chr6 46622410 46622455 -102894582 + G-rich Low_complexity Low_complexity 6 50 0 1 940 626 286 86 48 chr6 46622812 46622999 -102894038 + B4 SINE B4 99 292 0 1 940 1581 238 107 60 chr6 46623061 46623565 -102893472 - RMER15 LTR ERVL -1 574 47 1 940 21 0 0 0 chr6 46623938 46623959 -102893078 + AT_rich Low_complexity Low_complexity 1 21 0 1 940 606 239 202 6 chr6 46624593 46624761 -102892276 - B3 SINE B2 -14 202 2 1 940 270 0 0 0 chr6 46626576 46626606 -102890431 + (A)n Simple_repeat Simple_repeat 1 30 0 1 940 2869 36 0 3 chr6 46628522 46628860 -102888177 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 940 53083 26 9 6 chr6 46628860 46635319 -102881718 - IAPEz-int LTR ERVK 0 6481 8 1 940 2858 39 0 3 chr6 46635319 46635657 -102881380 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 940 5389 197 50 19 chr6 46635770 46636956 -102880081 - RMER12B LTR ERVK -182 1222 1 1 940 752 307 90 36 chr6 46636968 46637245 -102879792 + B4A SINE B4 1 292 0 1 940 1581 107 12 4 chr6 46639158 46639401 -102877636 + L1_Mus4 LINE L1 6381 6625 -11 1 940 5157 67 0 8 chr6 46639663 46640327 -102876710 + L1Md_F2 LINE L1 5911 6569 -13 1 940 837 90 0 0 chr6 46640967 46641100 -102875937 + (GA)n Simple_repeat Simple_repeat 2 134 0 1 940 261 0 0 0 chr6 46642188 46642217 -102874820 + (T)n Simple_repeat Simple_repeat 1 29 0 1 940 22 35 0 0 chr6 46642384 46642413 -102874624 + AT_rich Low_complexity Low_complexity 1 29 0 1 940 270 272 0 47 chr6 46642580 46642665 -102874372 + CT-rich Low_complexity Low_complexity 4 84 0 1 940 532 315 0 24 chr6 46642842 46643008 -102874029 + RSINE1 SINE B4 2 163 -2 1 940 6345 70 0 2 chr6 46643028 46643850 -102873187 - L1Md_F2 LINE L1 -10 6572 5753 1 940 397 161 61 12 chr6 46644079 46644161 -102872876 + MTE2a LTR MaLR 294 379 0 1 940 4948 151 82 34 chr6 46644533 46645551 -102871486 - Lx2B LINE L1 -7 6993 5927 1 940 437 302 77 6 chr6 46647335 46647505 -102869532 - L1ME2z LINE L1 -339 6105 5924 1 940 236 192 148 83 chr6 46647618 46647726 -102869311 - L1ME2z LINE L1 -717 5727 5613 1 940 402 21 0 0 chr6 46647836 46647883 -102869154 + (TTTTTG)n Simple_repeat Simple_repeat 3 49 0 1 940 208 248 10 10 chr6 46648626 46648728 -102868309 + (CA)n Simple_repeat Simple_repeat 1 102 0 1 940 315 88 48 95 chr6 46648728 46648791 -102868246 + HAL1-3A_ME LINE L1 1975 2034 -824 1 940 220 205 0 0 chr6 46649327 46649366 -102867671 + (CATA)n Simple_repeat Simple_repeat 1 39 0 2 940 24 32 0 0 chr6 46650846 46650877 -102866160 + AT_rich Low_complexity Low_complexity 1 31 0 2 940 444 287 8 0 chr6 46650925 46651047 -102865990 - Lx8 LINE L1 -739 6734 6612 2 940 1107 102 0 0 chr6 46651302 46651449 -102865588 - B1_Mus2 SINE Alu 0 147 1 2 940 21 57 0 0 chr6 46651999 46652034 -102865003 + AT_rich Low_complexity Low_complexity 1 35 0 2 940 807 240 6 49 chr6 46652264 46652469 -102864568 + B3A SINE B2 1 185 -10 2 940 230 193 0 17 chr6 46653146 46653204 -102863833 + GA-rich Low_complexity Low_complexity 4 60 0 2 940 208 160 60 0 chr6 46653352 46653402 -102863635 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 2 940 517 249 156 19 chr6 46653476 46653770 -102863267 + MTEa LTR MaLR 10 377 -2 2 940 60 53 0 0 chr6 46654289 46654384 -102862653 + AT_rich Low_complexity Low_complexity 1 95 0 2 940 362 309 123 5 chr6 46654967 46655162 -102861875 - MIRb SINE MIR -8 260 43 2 940 704 290 66 31 chr6 46655619 46655847 -102861190 - MLT1A0 LTR MaLR -4 361 126 2 940 507 339 147 14 chr6 46656769 46657122 -102859915 + Kanga1b DNA Tc2 32 431 -348 2 940 939 63 0 0 chr6 46657239 46657366 -102859671 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 2 940 963 283 69 17 chr6 46657415 46657744 -102859293 + MTD LTR MaLR 52 410 -9 2 940 4995 71 0 0 chr6 46658289 46658922 -102858115 + L1_Mus2 LINE L1 5933 6565 -1 2 940 234 179 0 0 chr6 46658948 46659004 -102858033 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 940 382 239 65 92 chr6 46660846 46661030 -102856007 + MLT1C LTR MaLR 212 467 0 2 940 223 281 41 82 chr6 46661431 46661528 -102855509 + L2b LINE L2 3199 3291 -84 2 941 28 0 0 0 chr6 46662772 46662800 -102854237 + AT_rich Low_complexity Low_complexity 1 28 0 2 941 243 0 0 0 chr6 46662871 46662898 -102854139 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 941 567 288 64 20 chr6 46663752 46663954 -102853083 + B3 SINE B2 1 211 -5 2 941 187 357 75 19 chr6 46664121 46664281 -102852756 - MIRb SINE MIR -25 243 75 2 941 578 282 5 77 chr6 46664394 46664572 -102852465 + B3A SINE B2 1 166 -32 2 941 342 0 0 0 chr6 46664572 46664610 -102852427 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 941 578 282 5 77 chr6 46664610 46664627 -102852410 + B3A SINE B2 167 182 -16 2 941 333 0 0 0 chr6 46664644 46664681 -102852356 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 941 183 42 0 0 chr6 46665258 46665282 -102851755 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 941 274 308 25 37 chr6 46666213 46666294 -102850743 + ID4 SINE ID 1 80 -3 2 941 209 204 148 0 chr6 46666682 46666736 -102850301 - L2 LINE L2 -830 2589 2528 2 941 946 108 51 0 chr6 46667125 46667282 -102849755 + Lx2 LINE L1 6833 6997 0 2 941 551 187 30 117 chr6 46667509 46667739 -102849298 - L1MDa LINE L1 -5370 1263 1054 2 941 460 300 166 25 chr6 46668069 46668394 -102848643 - MamRep434 DNA TcMar -9 417 47 2 941 269 319 25 25 chr6 46669438 46669560 -102847477 + Charlie5 DNA MER1_type 1 122 -2502 2 941 22 0 0 0 chr6 46669560 46669582 -102847455 + AT_rich Low_complexity Low_complexity 1 22 0 2 941 876 260 68 30 chr6 46669598 46669967 -102847070 + Charlie5 DNA MER1_type 2236 2618 -6 2 941 228 67 0 0 chr6 46670639 46670669 -102846368 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 2 941 2218 109 0 24 chr6 46670867 46671197 -102845840 + ORR1A3 LTR MaLR 1 322 -4 2 941 820 190 10 16 chr6 46671200 46671385 -102845652 + ORR1A3-int LTR MaLR 1 184 -1186 2 941 5341 158 28 17 chr6 46671385 46672429 -102844608 - L1_Mur2 LINE L1 -1147 4730 3676 2 941 3545 133 59 18 chr6 46672425 46673319 -102843718 + Lx2 LINE L1 5313 6280 -717 2 941 1771 96 103 0 chr6 46673338 46673620 -102843417 - Lx2 LINE L1 -273 6724 6414 2 941 234 0 0 0 chr6 46673633 46673659 -102843378 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2 941 309 259 12 12 chr6 46673973 46674059 -102842978 + ORR1A3 LTR MaLR 4 89 -281 2 941 3037 153 40 8 chr6 46674708 46675208 -102841829 - RMER20A LTR ERVK 0 516 1 2 941 189 0 0 0 chr6 46675515 46675536 -102841501 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 941 993 94 72 0 chr6 46675656 46675794 -102841243 - B1_Mus1 SINE Alu 0 148 1 2 941 549 276 119 79 chr6 46675794 46676088 -102840949 + MLT1C LTR MaLR 36 343 -124 2 941 399 145 0 0 chr6 46676113 46676182 -102840855 + (GA)n Simple_repeat Simple_repeat 1 69 0 2 941 503 232 15 77 chr6 46676182 46676329 -102840708 + MLT1C LTR MaLR 245 467 0 2 941 636 211 13 53 chr6 46676948 46677098 -102839939 - B1_Mur1 SINE Alu 0 149 6 2 941 4230 92 3 7 chr6 46677156 46677734 -102839303 + L1_Mus3 LINE L1 6055 6630 -8 2 941 416 252 29 10 chr6 46678302 46678406 -102838631 + RSINE1 SINE B4 36 141 -24 2 941 423 38 0 0 chr6 46678419 46678472 -102838565 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 941 287 335 110 15 chr6 46679478 46679665 -102837372 - MIR SINE MIR -14 262 51 2 941 6838 130 8 15 chr6 46679777 46681377 -102835660 - L1_Mus4 LINE L1 -33 6603 5025 2 941 3913 92 2 2 chr6 46681377 46681909 -102835128 - L1_Mus2 LINE L1 -1 6565 6034 2 941 6838 168 6 24 chr6 46681909 46682377 -102834660 - L1_Mus4 LINE L1 -859 5024 4559 2 941 351 44 0 0 chr6 46682710 46682755 -102834282 + (TTG)n Simple_repeat Simple_repeat 1 45 0 2 941 315 164 39 64 chr6 46683783 46683861 -102833176 - MER57-int LTR ERV1 -299 7238 7163 2 941 969 47 0 0 chr6 46684704 46684831 -102832206 + (GA)n Simple_repeat Simple_repeat 2 128 0 2 941 4545 179 52 14 chr6 46684926 46685783 -102831254 - RMER19B LTR ERVK -12 890 1 2 941 3349 47 0 0 chr6 46685902 46686304 -102830733 - L1Md_F2 LINE L1 -14 6568 6167 2 941 315 0 0 0 chr6 46686821 46686856 -102830181 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 941 562 328 39 10 chr6 46686939 46687142 -102829895 + B3 SINE B2 3 211 -5 2 941 289 224 224 0 chr6 46687366 46687473 -102829564 + L1MB7 LINE L1 5862 5992 -192 2 941 1142 194 23 14 chr6 46687562 46687781 -102829256 - URR1A DNA MER1_type 0 226 6 2 941 294 332 57 31 chr6 46688030 46688257 -102828780 - L1M5 LINE L1 -454 5719 5487 2 941 253 333 25 13 chr6 46691001 46691080 -102825957 - ID4 SINE ID -1 82 3 2 941 303 299 162 0 chr6 46691154 46691271 -102825766 + HAL1-3A_ME LINE L1 2304 2439 -419 2 941 212 146 49 0 chr6 46692923 46692964 -102824073 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 941 1225 230 86 97 chr6 46693532 46693993 -102823044 - MT2A LTR ERVL 0 601 1 2 941 229 313 107 12 chr6 46694369 46694453 -102822584 + RMER4A LTR ERVK 354 445 -21 2 941 2350 114 0 19 chr6 46694526 46694894 -102822143 + L1Md_F2 LINE L1 6210 6570 -12 2 941 516 310 19 48 chr6 46695105 46695315 -102821722 - RMER15 LTR ERVL -96 479 276 2 941 522 46 0 0 chr6 46696448 46696513 -102820524 + (TTA)n Simple_repeat Simple_repeat 2 66 0 2 941 5591 216 57 32 chr6 46696944 46698314 -102818723 + RMER12B LTR ERVK 1 1404 0 2 941 188 256 0 0 chr6 46698361 46698404 -102818633 - L3 LINE CR1 -1353 3136 3094 2 941 1973 184 34 24 chr6 46699467 46699879 -102817158 - MTD LTR MaLR -3 416 1 2 941 24 32 0 0 chr6 46700506 46700537 -102816500 + AT_rich Low_complexity Low_complexity 1 31 0 2 941 1365 96 5 0 chr6 46702723 46702911 -102814126 + B2_Mm1t SINE B2 2 190 -3 2 941 225 65 0 0 chr6 46703932 46703963 -102813074 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2 941 24 53 0 0 chr6 46704031 46704069 -102812968 + AT_rich Low_complexity Low_complexity 1 38 0 2 941 309 51 0 0 chr6 46704795 46704834 -102812203 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 941 2203 235 27 25 chr6 46705508 46706027 -102811010 - RMER5 LTR ERV1 -2 532 13 2 941 3116 63 0 8 chr6 46707000 46707399 -102809638 - MTA_Mm LTR MaLR 0 396 1 2 941 510 290 60 16 chr6 46707520 46707769 -102809268 + L1MB1 LINE L1 5908 6167 -1 2 941 725 325 53 38 chr6 46708941 46709261 -102807776 - MER2 DNA MER2_type -20 325 1 2 941 525 32 0 0 chr6 46710864 46710927 -102806110 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2 941 697 278 35 0 chr6 46711025 46711198 -102805839 - B3A SINE B2 -15 183 5 2 941 1145 266 100 6 chr6 46712132 46712461 -102804576 - ORR1D2 LTR MaLR -8 362 3 2 941 570 295 53 68 chr6 46713234 46713441 -102803596 - B4 SINE B4 -87 205 2 2 941 225 65 0 0 chr6 46714227 46714258 -102802779 + (TGG)n Simple_repeat Simple_repeat 1 31 0 2 941 331 279 104 35 chr6 46714297 46714412 -102802625 - RSINE1 SINE B4 -41 124 2 2 941 392 323 84 5 chr6 46715780 46715982 -102801055 - MIR SINE MIR -34 228 11 2 941 369 0 0 0 chr6 46715983 46716024 -102801013 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 941 981 64 0 0 chr6 46716108 46716249 -102800788 - L1Md_F2 LINE L1 -2 6580 6440 2 941 704 278 45 31 chr6 46716264 46716631 -102800406 - L1MB3 LINE L1 -53 6130 5756 2 941 335 225 10 141 chr6 46716679 46716801 -102800236 + PB1D7 SINE Alu 27 130 -20 2 941 1436 276 35 16 chr6 46717063 46717364 -102799673 + MTE2b LTR MaLR 1 311 -68 2 941 405 0 0 0 chr6 46717364 46717409 -102799628 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 2 941 1436 276 35 16 chr6 46717409 46717420 -102799617 + MTE2b LTR MaLR 312 322 -57 2 941 517 258 228 0 chr6 46717420 46717587 -102799450 - B3 SINE B2 -10 206 2 2 941 1436 276 35 16 chr6 46717587 46717645 -102799392 + MTE2b LTR MaLR 323 379 0 2 941 298 281 0 0 chr6 46718502 46718584 -102798453 - ORR1D1 LTR MaLR -292 82 1 2 941 8960 3 0 0 chr6 46718721 46719763 -102797274 - L1Md_A LINE L1 -259 5624 4583 2 941 8577 3 0 0 chr6 46719763 46720708 -102796329 + L1Md_A LINE L1 5638 6582 0 2 941 522 0 0 0 chr6 46721039 46721097 -102795940 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 941 363 291 13 0 chr6 46721366 46721445 -102795592 + B4 SINE B4 1 80 -212 3 941 233 185 0 15 chr6 46721467 46721533 -102795504 + GA-rich Low_complexity Low_complexity 1 65 0 3 941 697 307 25 25 chr6 46721564 46721761 -102795276 + B4 SINE B4 86 282 -10 3 941 414 69 0 0 chr6 46721782 46721840 -102795197 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 941 299 146 21 0 chr6 46722341 46722388 -102794649 + MTEa LTR MaLR 285 332 -47 3 941 911 205 110 18 chr6 46722388 46722691 -102794346 + MTEa LTR MaLR 1 378 -1 3 941 432 55 0 0 chr6 46722804 46722859 -102794178 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 941 510 304 35 50 chr6 46722867 46723078 -102793959 + MLT1D LTR MaLR 251 452 -53 3 941 441 0 0 0 chr6 46723871 46723920 -102793117 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 3 941 1551 289 11 8 chr6 46724130 46724507 -102792530 - MTE2a LTR MaLR 0 379 2 3 941 1171 247 39 58 chr6 46725373 46725683 -102791354 - ORR1E LTR MaLR -55 304 1 3 941 198 150 0 0 chr6 46725749 46725789 -102791248 + (TGG)n Simple_repeat Simple_repeat 1 40 0 3 941 287 305 128 0 chr6 46726101 46726242 -102790795 - RMER15 LTR ERVL -16 559 401 3 941 710 274 53 6 chr6 46726622 46726775 -102790262 - L1MC1 LINE L1 -110 6223 6066 3 941 283 345 0 60 chr6 46726775 46726892 -102790145 + PB1D10 SINE Alu 4 113 -4 3 941 369 0 0 0 chr6 46726892 46726933 -102790104 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 941 710 274 53 6 chr6 46726933 46727097 -102789940 - L1MC1 LINE L1 -268 6065 5892 3 941 23 0 0 0 chr6 46729298 46729321 -102787716 + AT_rich Low_complexity Low_complexity 1 23 0 3 941 1921 83 55 0 chr6 46729545 46729844 -102787193 + ORR1A2 LTR MaLR 48 394 0 3 941 536 244 7 37 chr6 46729881 46730017 -102787020 + ID_B1 SINE B4 93 224 0 3 941 348 280 47 16 chr6 46730122 46730164 -102786873 + MLT1A LTR MaLR 33 77 -297 3 941 4988 165 28 15 chr6 46730164 46731054 -102785983 + RMER19B LTR ERVK 1 902 0 3 941 348 280 47 16 chr6 46731054 46731138 -102785899 + MLT1A LTR MaLR 78 162 -212 3 941 542 226 202 42 chr6 46731845 46732177 -102784860 + L1M3 LINE L1 2137 2521 -3619 3 941 498 75 0 0 chr6 46732274 46732341 -102784696 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 941 362 303 141 8 chr6 46732406 46732680 -102784357 + L1M3 LINE L1 2587 2904 -3242 3 941 1372 283 24 47 chr6 46732772 46732885 -102784152 - Lx6 LINE L1 -25 7435 7324 3 941 405 0 0 0 chr6 46732885 46732930 -102784107 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 941 1372 297 24 48 chr6 46732930 46733420 -102783617 - Lx6 LINE L1 -137 7323 6464 3 941 265 283 108 82 chr6 46733487 46733503 -102783534 + B4A SINE B4 60 221 -71 3 941 870 68 1 5 chr6 46733503 46733645 -102783392 + B1_Mus2 SINE Alu 3 142 -6 3 941 378 0 0 0 chr6 46733647 46733689 -102783348 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 3 941 432 273 102 10 chr6 46733689 46733885 -102783152 + L1M3 LINE L1 3045 3258 -2885 3 941 549 61 0 0 chr6 46734958 46735059 -102781978 + L1Md_F3 LINE L1 6485 6584 0 3 941 2317 110 3 3 chr6 46736232 46736559 -102780478 - ORR1A2 LTR MaLR 0 327 1 3 941 935 219 90 71 chr6 46737184 46737570 -102779467 + RMER20B LTR ERVK 181 620 -7 3 941 489 369 32 28 chr6 46737559 46737810 -102779227 + B4 SINE B4 37 288 -4 3 941 228 264 119 28 chr6 46737804 46737913 -102779124 - RLTR22_Mur LTR ERVK -433 1415 1297 3 941 14161 94 9 1 chr6 46740203 46743041 -102773996 - L1_Mus3 LINE L1 -16 6622 3761 3 941 5589 103 12 13 chr6 46743038 46744354 -102772683 - L1VL1 LINE L1 -2145 1553 242 3 941 1773 194 22 24 chr6 46744433 46744802 -102772235 - RMER6B LTR ERVK -93 368 1 3 941 829 253 59 0 chr6 46744850 46745036 -102772001 - B3 SINE B2 -19 197 1 3 941 1019 59 26 0 chr6 46745050 46745202 -102771835 + (CA)n Simple_repeat Simple_repeat 1 156 0 3 941 321 26 0 0 chr6 46745834 46745872 -102771165 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 3 941 438 36 0 0 chr6 46745949 46746005 -102771032 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 941 315 49 0 0 chr6 46746235 46746276 -102770761 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 941 279 209 0 0 chr6 46747373 46747440 -102769597 + Lx9 LINE L1 7404 7470 -174 3 941 216 0 0 0 chr6 46747455 46747479 -102769558 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 941 25 51 0 0 chr6 46747576 46747615 -102769422 + AT_rich Low_complexity Low_complexity 1 39 0 3 941 9474 136 32 7 chr6 46748355 46750864 -102766173 + Lx LINE L1 4088 6654 0 3 941 22 0 0 0 chr6 46750914 46750936 -102766101 + AT_rich Low_complexity Low_complexity 1 22 0 3 941 3566 49 52 96 chr6 46751376 46751919 -102765118 - MURVY-LTR LTR ERV1 0 519 1 3 941 216 0 0 0 chr6 46752019 46752043 -102764994 + (A)n Simple_repeat Simple_repeat 1 24 0 3 941 252 0 0 0 chr6 46752043 46752071 -102764966 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 941 282 227 40 13 chr6 46752072 46752148 -102764889 + MER34 LTR ERV1 57 134 -408 3 941 761 108 0 15 chr6 46753686 46753818 -102763219 - Lx LINE L1 0 6654 6525 3 941 238 244 0 0 chr6 46754464 46754509 -102762528 - MER112 DNA MER1_type -216 45 1 3 941 548 278 79 90 chr6 46755074 46755387 -102761650 - MTEb LTR MaLR -13 366 10 3 941 1016 183 14 56 chr6 46755775 46755989 -102761048 - URR1B DNA MER1_type -3 222 18 3 941 207 0 0 0 chr6 46756091 46756114 -102760923 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 941 33 25 0 0 chr6 46756379 46756419 -102760618 + AT_rich Low_complexity Low_complexity 1 40 0 3 941 22 35 0 0 chr6 46756457 46756486 -102760551 + AT_rich Low_complexity Low_complexity 1 29 0 3 941 706 288 80 126 chr6 46757022 46757324 -102759713 - B4 SINE B4 0 292 5 3 941 350 245 32 0 chr6 46757465 46757559 -102759478 - Lx8 LINE L1 -629 6844 6748 3 941 22 0 0 0 chr6 46757666 46757688 -102759349 + AT_rich Low_complexity Low_complexity 1 22 0 3 941 1069 260 64 39 chr6 46757835 46758195 -102758842 - ORR1D2 LTR MaLR 0 370 2 3 941 186 43 0 0 chr6 46758217 46758240 -102758797 + (T)n Simple_repeat Simple_repeat 1 23 0 3 941 1906 239 116 26 chr6 46758878 46759085 -102757952 - Lx6 LINE L1 -8 7452 7245 3 941 1098 99 0 0 chr6 46759085 46759227 -102757810 + B1_Mus1 SINE Alu 1 142 -6 3 941 540 45 0 0 chr6 46759228 46759295 -102757742 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 941 1906 239 116 26 chr6 46759295 46759538 -102757499 - Lx6 LINE L1 -216 7244 6961 3 941 2555 63 131 3 chr6 46759538 46759889 -102757148 - MTA_Mm LTR MaLR 0 396 1 3 941 2061 206 38 169 chr6 46759889 46760916 -102756121 - Lx6 LINE L1 -3813 2067 1262 3 941 396 238 19 19 chr6 46760928 46761031 -102756006 - Lx8 LINE L1 -770 6703 6601 3 941 554 0 15 0 chr6 46761112 46761178 -102755859 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 941 494 269 43 17 chr6 46761185 46761416 -102755621 - L1M2 LINE L1 -2893 3250 3014 3 941 4115 148 46 13 chr6 46761461 46762908 -102754129 + L1Md_F LINE L1 221 1716 -4167 3 941 3768 14 0 0 chr6 46762908 46763333 -102753704 + L1Md_T LINE L1 6158 6582 0 3 941 1500 233 54 20 chr6 46763382 46763736 -102753301 + MTC LTR MaLR 42 407 -14 3 941 683 193 166 69 chr6 46763741 46763876 -102753161 + ORR1D2-int LTR MaLR 1132 1297 -73 3 941 2263 137 68 5 chr6 46763876 46764243 -102752794 - ORR1B1 LTR MaLR -4 390 1 3 941 683 193 166 69 chr6 46764243 46764324 -102752713 + ORR1D2-int LTR MaLR 1298 1369 -1 3 941 1076 254 66 106 chr6 46764325 46764704 -102752333 + ORR1D2 LTR MaLR 1 364 -6 3 941 267 266 50 75 chr6 46764722 46764842 -102752195 + MLT1C LTR MaLR 365 472 -33 3 941 180 0 0 0 chr6 46764973 46764993 -102752044 + (A)n Simple_repeat Simple_repeat 1 20 0 3 941 11575 114 10 1 chr6 46764993 46766864 -102750173 + L1_Mm LINE L1 1686 3573 -2310 3 941 2427 111 23 0 chr6 46766895 46767290 -102749747 + L1_Mm LINE L1 4643 5046 -837 3 941 527 310 73 8 chr6 46767311 46767690 -102749347 - L1_Mur3 LINE L1 -3406 2474 2044 3 941 7698 102 2 53 chr6 46767781 46770295 -102746742 - L1Md_F3 LINE L1 -17 6567 4311 3 941 36933 45 3 4 chr6 46770278 46776455 -102740582 - L1Md_T LINE L1 -2 6580 413 3 941 405 290 221 16 chr6 46776447 46776894 -102740143 - L1MEf LINE L1 -3878 2205 1528 3 941 438 322 73 71 chr6 46776922 46777360 -102739677 - L1MEf LINE L1 -5175 1303 865 3 941 1841 138 21 24 chr6 46777974 46778302 -102738735 - ORR1A4 LTR MaLR -2 327 1 3 941 304 255 123 18 chr6 46778955 46779179 -102737858 - Charlie1 DNA MER1_type -56 2725 2462 3 941 342 270 0 0 chr6 46779182 46779256 -102737781 + ID4_ SINE ID 5 78 -5 3 941 238 169 0 30 chr6 46779284 46779351 -102737686 + GA-rich Low_complexity Low_complexity 3 67 0 3 941 1160 58 0 0 chr6 46779450 46779588 -102737449 + B1_Mm SINE Alu 1 138 -9 3 941 4992 31 5 0 chr6 46780622 46781241 -102735796 - L1Md_A LINE L1 -374 6208 5587 3 941 3054 45 11 0 chr6 46781257 46781639 -102735398 + L1Md_T LINE L1 6196 6581 -1 3 941 243 0 0 0 chr6 46781753 46781780 -102735257 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 3 941 890 261 9 24 chr6 46781805 46782017 -102735020 + B3 SINE B2 1 209 -7 3 941 303 211 10 21 chr6 46782032 46782129 -102734908 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 3 941 752 271 57 41 chr6 46782467 46782784 -102734253 - MLT1A0 LTR MaLR -33 434 6 3 941 333 0 0 0 chr6 46783036 46783073 -102733964 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 941 273 182 0 0 chr6 46783352 46783407 -102733630 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 941 268 239 106 31 chr6 46783457 46783617 -102733420 + L1MEg LINE L1 1519 1690 -4727 3 941 241 203 17 0 chr6 46783668 46783727 -102733310 + L1MEg LINE L1 1664 1723 -4785 3 941 441 0 0 0 chr6 46784071 46784120 -102732917 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 941 393 22 0 0 chr6 46784120 46784165 -102732872 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 941 5063 60 5 0 chr6 46784165 46784803 -102732234 - L1_Mus2 LINE L1 -17 6549 5909 3 941 5352 103 4 0 chr6 46784802 46785537 -102731500 - Lx2B LINE L1 -1 6999 6262 3 941 686 84 0 0 chr6 46785537 46785632 -102731405 + Lx2B LINE L1 6181 6275 -725 3 941 217 364 91 48 chr6 46785768 46786166 -102730871 - L2 LINE L2 -1609 1810 1396 3 941 746 299 103 24 chr6 46786389 46787139 -102729898 + L1MA5 LINE L1 4889 5725 -572 3 941 271 259 71 65 chr6 46787758 46787927 -102729110 + L1MA5 LINE L1 5763 5932 -368 3 941 23 0 0 0 chr6 46788717 46788740 -102728297 + AT_rich Low_complexity Low_complexity 1 23 0 3 941 242 397 101 21 chr6 46789528 46789716 -102727321 - LTR88c LTR Genie? -617 245 43 4 941 342 0 0 0 chr6 46790233 46790271 -102726766 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 941 615 117 0 0 chr6 46790271 46790365 -102726672 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 4 941 345 380 24 0 chr6 46790376 46790542 -102726495 - Lx8 LINE L1 -189 7284 7115 4 941 265 259 111 0 chr6 46790545 46790653 -102726384 + Lx8 LINE L1 6969 7088 -385 4 941 397 262 353 5 chr6 46791012 46791219 -102725818 - B4A SINE B4 -12 280 2 4 942 288 77 0 0 chr6 46792751 46792790 -102724247 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 4 942 827 220 315 12 chr6 46792976 46793316 -102723721 - Lx3C LINE L1 -7 7051 6607 4 942 318 228 176 0 chr6 46794058 46794194 -102722843 - L1ME3 LINE L1 -93 6069 5910 4 942 1235 285 76 20 chr6 46794247 46794601 -102722436 - MTEa LTR MaLR -5 374 1 4 942 1326 12 0 6 chr6 46794690 46794851 -102722186 + B2_Mm1a SINE B2 1 160 -33 4 942 243 0 0 0 chr6 46794851 46794878 -102722159 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 942 601 244 112 17 chr6 46794878 46794895 -102722142 + B3A SINE B2 178 195 -3 4 942 381 322 76 94 chr6 46795004 46795292 -102721745 - ORR1E LTR MaLR -2 357 75 4 942 237 65 0 0 chr6 46795324 46795355 -102721682 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 4 942 254 254 0 0 chr6 46795419 46795482 -102721555 - MLT2B5 LTR ERVL -654 63 1 4 942 207 0 0 0 chr6 46795657 46795680 -102721357 + (A)n Simple_repeat Simple_repeat 1 23 0 4 942 624 318 83 67 chr6 46795973 46796347 -102720690 + MLT1B LTR MaLR 3 382 -8 4 942 1183 191 210 0 chr6 46796452 46796761 -102720276 - ORR1D1 LTR MaLR 0 374 1 4 942 23 0 0 0 chr6 46798253 46798276 -102718761 + AT_rich Low_complexity Low_complexity 1 23 0 4 942 1368 145 31 31 chr6 46798643 46798899 -102718138 + L1Md_F2 LINE L1 6326 6581 -1 4 942 624 62 0 0 chr6 46799193 46799274 -102717763 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 942 22 0 0 0 chr6 46799372 46799394 -102717643 + AT_rich Low_complexity Low_complexity 1 22 0 4 942 2524 71 0 41 chr6 46799478 46799846 -102717191 - L1Md_F2 LINE L1 0 6582 6230 4 942 525 259 82 22 chr6 46800046 46800180 -102716857 - B1_Mur1 SINE Alu -7 142 1 4 942 281 261 96 145 chr6 46800180 46800206 -102716831 - B4 SINE B4 -67 201 68 4 942 3820 2 0 0 chr6 46800852 46801273 -102715764 + L1Md_T LINE L1 6162 6582 0 4 942 207 0 0 0 chr6 46801286 46801309 -102715728 + (A)n Simple_repeat Simple_repeat 1 23 0 4 942 549 284 77 12 chr6 46801313 46801519 -102715518 + B4 SINE B4 1 264 -28 4 942 1131 91 22 17 chr6 46802570 46802749 -102714288 - L1_Mus1 LINE L1 0 6567 6388 4 942 198 253 73 0 chr6 46803084 46803152 -102713885 - L2c LINE L2 -79 3347 3281 4 942 33 25 0 0 chr6 46803724 46803764 -102713273 + AT_rich Low_complexity Low_complexity 1 40 0 4 942 22 35 0 0 chr6 46804295 46804324 -102712713 + AT_rich Low_complexity Low_complexity 1 29 0 4 942 514 261 94 20 chr6 46805269 46805472 -102711565 + Lx8 LINE L1 7256 7473 0 4 942 930 303 20 57 chr6 46808130 46808431 -102708606 - B4A SINE B4 0 292 3 4 942 1659 210 162 28 chr6 46808517 46808580 -102708457 - MT2A LTR ERVL 0 533 465 4 942 393 39 0 0 chr6 46808580 46808631 -102708406 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 942 1659 210 162 28 chr6 46808631 46808881 -102708156 - MT2A LTR ERVL -69 464 167 4 942 486 0 0 0 chr6 46808881 46808935 -102708102 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 942 1659 210 162 28 chr6 46808935 46809090 -102707947 - MT2A LTR ERVL -367 166 3 4 942 680 296 55 0 chr6 46809695 46809894 -102707143 + B3 SINE B2 1 210 -6 4 942 254 0 20 61 chr6 46812166 46812215 -102704822 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 942 645 53 116 0 chr6 46812218 46812313 -102704724 - B1_Mm SINE Alu -6 141 36 4 942 189 0 0 0 chr6 46813668 46813689 -102703348 + (TTCC)n Simple_repeat Simple_repeat 2 22 0 4 942 468 0 0 0 chr6 46813970 46814022 -102703015 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 942 290 283 68 34 chr6 46815721 46815838 -102701199 + MIRb SINE MIR 19 139 -129 4 942 627 250 91 35 chr6 46816029 46816228 -102700809 - MTE2b LTR MaLR -169 210 1 4 942 666 210 77 11 chr6 46816440 46816623 -102700414 - B2_Mm2 SINE B2 0 195 1 4 942 1194 61 0 0 chr6 46816749 46816896 -102700141 + B1_Mus2 SINE Alu 1 147 0 4 942 484 300 43 22 chr6 46816971 46817155 -102699882 - MER58B DNA MER1_type -2 339 152 4 942 1755 99 4 4 chr6 46817389 46817642 -102699395 - Lx LINE L1 -2 6652 6400 4 942 568 266 0 6 chr6 46817645 46817804 -102699233 + L1VL4 LINE L1 156 313 -5989 4 942 401 293 0 33 chr6 46817948 46818068 -102698969 + PB1D10 SINE Alu 1 116 -1 4 942 286 354 87 16 chr6 46818630 46818814 -102698223 - MER77 LTR ERVL -4 603 407 4 942 374 240 9 55 chr6 46819871 46819981 -102697056 + PB1D10 SINE Alu 4 108 -9 4 942 707 328 11 0 chr6 46820133 46820319 -102696718 + B3 SINE B2 1 188 -28 4 942 1343 53 0 0 chr6 46821153 46821322 -102695715 - L1Md_T LINE L1 -1 6581 6413 4 942 342 59 0 0 chr6 46821745 46821796 -102695241 + L1_Mus1 LINE L1 6515 6565 -2 4 942 228 67 0 0 chr6 46821863 46821893 -102695144 + (A)n Simple_repeat Simple_repeat 1 30 0 4 942 606 28 0 0 chr6 46822150 46822222 -102694815 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 942 479 129 0 0 chr6 46824201 46824271 -102692766 - RMER6A LTR ERVK 0 720 651 4 942 255 154 0 0 chr6 46824275 46824340 -102692697 + A-rich Low_complexity Low_complexity 90 154 0 4 942 983 151 42 108 chr6 46824342 46824627 -102692410 - RMER6A LTR ERVK -68 688 398 4 942 211 184 0 0 chr6 46824649 46824687 -102692350 + (AACTG)n Simple_repeat Simple_repeat 2 39 0 4 942 734 217 95 36 chr6 46825309 46825593 -102691444 - RMER6A LTR ERVK -369 351 1 4 942 3557 20 0 0 chr6 46825895 46826291 -102690746 + MTA_Mm LTR MaLR 1 396 0 4 942 599 336 56 5 chr6 46826592 46826807 -102690230 + MIRb SINE MIR 38 263 -5 4 942 493 346 164 16 chr6 46826999 46827322 -102689715 + MLT1A LTR MaLR 4 374 0 4 942 241 336 35 70 chr6 46828007 46828308 -102688729 - MLT1A0 LTR MaLR -1 407 77 4 942 338 333 13 126 chr6 46828398 46828549 -102688488 - B3A SINE B2 -2 196 63 4 942 483 341 39 43 chr6 46828556 46828813 -102688224 + MLT1C LTR MaLR 203 458 -9 4 942 374 222 83 0 chr6 46829145 46829253 -102687784 + L1MA4 LINE L1 5506 5622 -678 4 942 733 225 0 23 chr6 46829329 46829461 -102687576 - RSINE1 SINE B4 -29 136 8 4 942 789 241 7 0 chr6 46829572 46829713 -102687324 + B1_Mur2 SINE Alu 1 142 -7 4 942 468 0 0 0 chr6 46829722 46829774 -102687263 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 942 493 325 58 8 chr6 46829776 46830018 -102687019 + L1MA4 LINE L1 5773 6026 -274 4 942 3402 242 67 16 chr6 46830072 46830721 -102686316 - Lx6 LINE L1 -4 7456 6771 4 942 3348 11 37 0 chr6 46830721 46831103 -102685934 + MTA_Mm LTR MaLR 1 396 0 4 942 8685 43 21 2 chr6 46831103 46832180 -102684857 + MTA_Mm-int LTR MaLR 1 1098 0 4 942 3300 16 37 0 chr6 46832180 46832562 -102684475 + MTA_Mm LTR MaLR 1 396 0 4 942 3402 242 67 16 chr6 46832562 46832775 -102684262 - Lx6 LINE L1 -690 6770 6550 4 942 1568 136 7 24 chr6 46832763 46833057 -102683980 - L1_Mur3 LINE L1 -1820 4060 3772 4 942 606 119 50 0 chr6 46833054 46833155 -102683882 + L1_Mur3 LINE L1 3890 3995 -1885 4 942 524 189 0 0 chr6 46833148 46833254 -102683783 - L1_Mur3 LINE L1 -2107 3770 3665 4 942 262 338 75 8 chr6 46833319 46833558 -102683479 - L1_Mur3 LINE L1 -7374 354 100 4 942 581 258 100 15 chr6 46833567 46833724 -102683313 + ID_B1 SINE B4 55 218 -74 4 942 241 296 141 47 chr6 46833611 46833760 -102683277 - YREP_Mm Unknown Unknown -1512 300 138 4 942 273 267 0 26 chr6 46834043 46834120 -102682917 + MLT1A1 LTR MaLR 318 392 -16 4 942 541 288 118 0 chr6 46834253 46834465 -102682572 - MIR SINE MIR -10 252 16 4 942 1092 294 40 14 chr6 46834733 46835009 -102682028 + B4A SINE B4 10 292 0 4 942 183 167 0 0 chr6 46835020 46835062 -102681975 + GA-rich Low_complexity Low_complexity 2 43 0 4 942 236 229 12 0 chr6 46835065 46835148 -102681889 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 942 238 281 132 82 chr6 46835908 46836067 -102680970 - Charlie4z DNA MER1_type 0 167 1 4 942 874 288 75 45 chr6 46836231 46836674 -102680363 - Lx8 LINE L1 0 7473 7018 4 942 887 301 158 28 chr6 46838499 46838936 -102678101 + MLT1D LTR MaLR 3 496 -9 4 942 3888 77 50 15 chr6 46838992 46839531 -102677506 + L1_Mus1 LINE L1 6010 6567 0 4 942 1086 136 136 0 chr6 46840198 46840396 -102676641 + URR1B DNA MER1_type 1 225 0 4 942 758 44 0 89 chr6 46840517 46840612 -102676425 + MTA_Mm LTR MaLR 284 396 0 4 942 339 312 84 47 chr6 46840612 46840641 -102676396 - Tigger6a DNA MER2_type -25 1058 1034 4 942 9308 25 4 2 chr6 46840641 46841737 -102675300 + MTA_Mm-int LTR MaLR 1 1098 0 4 942 3475 23 2 0 chr6 46841737 46842132 -102674905 + MTA_Mm LTR MaLR 1 396 0 4 942 339 312 84 47 chr6 46842132 46842316 -102674721 - Tigger6a DNA MER2_type -50 1033 837 4 942 1335 259 40 20 chr6 46842390 46842740 -102674297 + ORR1D2 LTR MaLR 5 361 -9 4 942 1234 294 72 77 chr6 46842741 46843434 -102673603 - Tigger6a DNA MER2_type -392 691 2 4 942 216 158 0 0 chr6 46843437 46843475 -102673562 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 942 243 326 41 41 chr6 46843538 46843781 -102673256 - L1M5 LINE L1 -352 5888 5646 4 942 180 0 0 0 chr6 46844431 46844451 -102672586 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 4 942 6887 75 16 10 chr6 46844603 46845168 -102671869 - L1Md_F2 LINE L1 0 6582 6018 4 942 261 57 0 0 chr6 46845168 46845203 -102671834 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 942 30821 77 45 5 chr6 46845203 46850461 -102666576 - L1Md_F2 LINE L1 -565 6017 538 4 942 29 70 0 0 chr6 46850649 46850706 -102666331 + AT_rich Low_complexity Low_complexity 1 57 0 4 942 628 274 43 22 chr6 46851188 46851326 -102665711 - RSINE1 SINE B4 -2 163 23 4 942 376 220 10 29 chr6 46851769 46851872 -102665165 - RCHARR1 DNA MER1_type -480 494 394 4 942 249 241 0 79 chr6 46851874 46851937 -102665100 - RCHARR1 DNA MER1_type -915 59 2 4 942 341 289 94 55 chr6 46851957 46852042 -102664995 + L1MB1 LINE L1 5955 6043 -125 4 942 1418 192 122 6 chr6 46852042 46852377 -102664660 + ORR1D1 LTR MaLR 1 374 0 4 942 341 289 94 55 chr6 46852377 46852492 -102664545 + L1MB1 LINE L1 6044 6163 -5 4 942 25 0 0 0 chr6 46853450 46853475 -102663562 + AT_rich Low_complexity Low_complexity 1 25 0 5 942 5917 42 0 1 chr6 46854033 46854747 -102662290 - L1Md_T LINE L1 -1 6581 5869 5 942 492 291 74 74 chr6 46854801 46854990 -102662047 + B3A SINE B2 4 192 -6 5 942 228 346 0 71 chr6 46855215 46855327 -102661710 - MamRep1161 DNA TcMar -852 105 2 5 942 192 77 0 0 chr6 46857111 46857137 -102659900 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 5 942 261 273 0 35 chr6 46857137 46857251 -102659786 - BC1_Mm scRNA scRNA -23 129 20 5 942 305 274 122 23 chr6 46857355 46857486 -102659551 - RMER15 LTR ERVL -157 418 275 5 942 313 295 63 32 chr6 46857522 46857648 -102659389 - RMER15 LTR ERVL -445 130 1 5 942 246 156 0 0 chr6 46858380 46858425 -102658612 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 942 311 257 124 0 chr6 46858437 46858542 -102658495 - PB1D7 SINE Alu -2 118 1 5 942 3914 67 6 8 chr6 46859426 46859937 -102657100 + L1Md_F2 LINE L1 6072 6581 -1 5 942 30 0 0 0 chr6 46860521 46860551 -102656486 + AT_rich Low_complexity Low_complexity 1 30 0 5 942 1111 284 63 8 chr6 46861140 46861491 -102655546 - ORR1D2 LTR MaLR 0 370 1 5 942 296 327 103 57 chr6 46861502 46861765 -102655272 - ORR1E LTR MaLR -21 338 64 5 942 278 265 11 98 chr6 46861827 46861838 -102655199 - ORR1E LTR MaLR -295 84 1 5 942 339 235 25 0 chr6 46861838 46861919 -102655118 - MLT2B3 LTR ERVL -471 83 1 5 942 332 290 48 29 chr6 46865839 46865942 -102651095 + B3A SINE B2 71 175 -23 5 942 627 14 0 0 chr6 46865964 46866036 -102651001 + (GA)n Simple_repeat Simple_repeat 2 73 0 5 942 534 298 151 113 chr6 46868306 46868571 -102648466 + B4 SINE B4 1 275 -17 5 942 216 97 0 0 chr6 46868571 46868602 -102648435 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 942 255 211 0 0 chr6 46868603 46868660 -102648377 + GA-rich Low_complexity Low_complexity 2 58 0 5 942 212 122 0 24 chr6 46868675 46868717 -102648320 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 5 942 1002 138 6 29 chr6 46868924 46869096 -102647941 - URR1A DNA MER1_type 0 226 59 5 942 315 0 0 0 chr6 46869454 46869489 -102647548 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 5 942 413 194 232 8 chr6 46870119 46870244 -102646793 - RMER15 LTR ERVL -1 574 422 5 942 271 274 39 86 chr6 46870325 46870453 -102646584 - RMER15 LTR ERVL -390 185 64 5 942 210 37 0 0 chr6 46872605 46872632 -102644405 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 5 942 2116 284 55 121 chr6 46872644 46873788 -102643249 - Lx8 LINE L1 -5 7468 6400 5 942 648 308 48 18 chr6 46873788 46874016 -102643021 - MER67D LTR ERV1 -279 235 1 5 942 1360 247 74 25 chr6 46874180 46874543 -102642494 + MTEa LTR MaLR 1 419 0 5 942 234 173 36 71 chr6 46875276 46875332 -102641705 - tRNA-Ile-ATA tRNA tRNA 0 77 24 5 942 499 319 101 38 chr6 46876018 46876138 -102640899 - Lx9 LINE L1 -291 7353 7230 5 942 1698 146 67 50 chr6 46876138 46876342 -102640695 - RMER17C LTR ERVK 0 410 189 5 942 455 0 0 18 chr6 46876342 46876398 -102640639 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 942 1698 146 67 50 chr6 46876398 46876596 -102640441 - RMER17C LTR ERVK -222 188 2 5 942 499 319 101 38 chr6 46876596 46876840 -102640197 - Lx9 LINE L1 -415 7229 6966 5 942 248 290 50 10 chr6 46876842 46876943 -102640094 - Lx9 LINE L1 -821 6823 6719 5 942 815 193 27 0 chr6 46877216 46877366 -102639671 + MTE2a LTR MaLR 226 379 0 5 942 555 276 40 35 chr6 46877789 46877988 -102639049 + MLT2B4 LTR ERVL 6 205 -351 5 942 1813 172 30 14 chr6 46878040 46878406 -102638631 - ORR1D1 LTR MaLR -2 372 1 5 942 288 229 11 57 chr6 46879443 46879494 -102637543 - Ricksha_c DNA MuDR -1156 892 845 5 942 473 32 16 0 chr6 46879494 46879557 -102637480 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 5 942 288 229 11 57 chr6 46879557 46879593 -102637444 - Ricksha_c DNA MuDR -1204 844 809 5 942 232 239 0 95 chr6 46879626 46879700 -102637337 - MLT2B5 LTR ERVL -646 71 5 5 942 183 299 90 0 chr6 46879725 46879792 -102637245 - MIRm SINE MIR -195 81 9 5 942 255 338 29 0 chr6 46880724 46880792 -102636245 + MER5B DNA MER1_type 102 171 -7 5 942 722 123 8 0 chr6 46881188 46881318 -102635719 + (TG)n Simple_repeat Simple_repeat 2 132 0 5 942 6102 86 24 1 chr6 46881387 46882222 -102634815 - L1_Mus3 LINE L1 -2 6636 5783 5 942 7127 135 5 82 chr6 46882230 46884371 -102632666 - L1_Mus2 LINE L1 -1 6565 4636 5 942 21 0 0 0 chr6 46884649 46884670 -102632367 + AT_rich Low_complexity Low_complexity 1 21 0 5 942 1228 254 74 15 chr6 46884833 46885172 -102631865 - ORR1E LTR MaLR 0 359 1 5 942 584 27 0 13 chr6 46885214 46885289 -102631748 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 942 343 280 41 138 chr6 46885849 46885994 -102631043 + B3A SINE B2 3 133 -65 5 942 351 0 0 0 chr6 46886009 46886048 -102630989 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 942 249 255 82 0 chr6 46886204 46886302 -102630735 - L1MB2 LINE L1 -11 6160 6055 5 942 347 255 10 50 chr6 46888075 46888174 -102628863 + ID_B1 SINE B4 109 203 -21 5 942 590 348 108 23 chr6 46888716 46888975 -102628062 + B4 SINE B4 10 290 -2 5 942 222 91 0 0 chr6 46888982 46889015 -102628022 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 942 449 320 122 44 chr6 46889304 46889585 -102627452 - MER54A LTR ERVL -528 373 63 5 942 3876 109 23 0 chr6 46889585 46890155 -102626882 + L1_Mus3 LINE L1 6056 6638 0 5 942 449 320 122 44 chr6 46890155 46890216 -102626821 - MER54A LTR ERVL -839 62 4 5 942 805 319 112 10 chr6 46890280 46890575 -102626462 - MLT1A0 LTR MaLR 0 365 41 5 942 355 327 67 50 chr6 46890617 46890855 -102626182 - MIR SINE MIR -9 253 12 5 942 960 281 33 11 chr6 46891472 46891742 -102625295 + B4 SINE B4 5 280 -12 5 942 322 300 0 9 chr6 46891748 46891859 -102625178 + (CATATA)n Simple_repeat Simple_repeat 5 114 0 5 942 912 272 73 51 chr6 46892872 46893147 -102623890 + MER82 DNA MER2_type 373 653 0 5 942 622 280 41 45 chr6 46893375 46893596 -102623441 + ID_B1 SINE B4 1 220 -4 5 942 306 244 131 69 chr6 46893745 46893890 -102623147 - HAL1-3A_ME LINE L1 -421 2437 2284 5 942 690 277 84 104 chr6 46894008 46894423 -102622614 - RMER10A LTR ERVL -26 416 10 5 942 477 355 82 4 chr6 46894758 46895015 -102622022 + B4A SINE B4 3 279 -13 5 942 297 109 0 0 chr6 46895015 46895061 -102621976 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 942 477 115 0 0 chr6 46895098 46895176 -102621861 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 5 942 34 24 0 0 chr6 46895575 46895616 -102621421 + AT_rich Low_complexity Low_complexity 1 41 0 5 942 2771 134 21 93 chr6 46895772 46896340 -102620697 - RLTR24 LTR ERV1 0 529 3 5 942 267 31 0 0 chr6 46897329 46897361 -102619676 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 942 223 113 38 0 chr6 46897374 46897427 -102619610 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 942 448 207 0 54 chr6 46897465 46897557 -102619480 - B4A SINE B4 0 292 206 5 942 3573 180 21 25 chr6 46897602 46898271 -102618766 - RMER13B LTR ERVK -248 660 1 5 942 408 291 101 7 chr6 46898271 46898420 -102618617 - B4 SINE B4 -79 213 51 5 942 559 292 21 107 chr6 46899383 46899617 -102617420 + B3 SINE B2 3 216 0 5 942 21 0 0 0 chr6 46899727 46899748 -102617289 + AT_rich Low_complexity Low_complexity 1 21 0 5 942 524 228 52 123 chr6 46899801 46899956 -102617081 + B4A SINE B4 1 144 -148 5 942 219 236 18 0 chr6 46900099 46900154 -102616883 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 942 24 32 0 0 chr6 46900160 46900191 -102616846 + AT_rich Low_complexity Low_complexity 1 31 0 5 942 264 59 0 0 chr6 46901795 46901829 -102615208 + (CAT)n Simple_repeat Simple_repeat 2 35 0 5 942 308 344 92 32 chr6 46901830 46902066 -102614971 + L1MEe LINE L1 2255 2492 -3654 5 942 765 104 0 0 chr6 46902299 46902434 -102614603 + (GTTTG)n Simple_repeat Simple_repeat 1 135 0 5 942 365 220 51 102 chr6 46902434 46902581 -102614456 - B1F SINE Alu -9 140 1 5 942 236 214 18 0 chr6 46903634 46903690 -102613347 + CT-rich Low_complexity Low_complexity 3 59 0 5 942 817 276 45 27 chr6 46904625 46904845 -102612192 - MER58B DNA MER1_type -1 340 117 5 942 469 258 45 15 chr6 46905161 46905295 -102611742 + Tigger7 DNA MER2_type 213 350 -2141 5 942 253 242 45 0 chr6 46905293 46905359 -102611678 + Tigger7 DNA MER2_type 960 1028 -1463 5 942 351 0 0 0 chr6 46905760 46905799 -102611238 + (TAA)n Simple_repeat Simple_repeat 1 39 0 5 942 584 277 45 29 chr6 46905948 46906195 -102610842 + MER44B DNA MER2_type 58 347 -203 5 942 320 299 103 0 chr6 46906260 46906357 -102610680 + Tigger7 DNA MER2_type 2384 2490 -1 5 942 678 246 143 5 chr6 46906483 46906679 -102610358 + ID_B1 SINE B4 2 224 0 5 942 502 268 18 0 chr6 46906819 46906931 -102610106 + MER20 DNA MER1_type 106 219 0 5 942 258 317 83 90 chr6 46907392 46907466 -102609571 - B4A SINE B4 -5 287 213 5 942 676 33 0 21 chr6 46907466 46907559 -102609478 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 5 942 388 290 23 34 chr6 46907559 46907680 -102609357 - B4A SINE B4 -80 212 2 5 942 5799 94 37 7 chr6 46907862 46909397 -102607640 + L1VL2 LINE L1 22 1966 -1732 5 942 507 345 116 27 chr6 46909930 46910302 -102606735 + MLT1I LTR MaLR 5 409 -2 5 942 585 232 43 14 chr6 46912631 46912771 -102604266 + B1_Mur1 SINE Alu 5 148 -1 5 942 861 259 102 11 chr6 46912803 46913068 -102603969 - B4A SINE B4 -3 289 1 5 942 953 195 3 4 chr6 46914452 46914693 -102602344 - Lx9 LINE L1 -1692 5952 5677 5 942 1148 74 0 7 chr6 46914699 46914848 -102602189 + B1_Mus1 SINE Alu 1 148 0 5 942 1976 251 43 114 chr6 46914871 46915658 -102601379 - Lx9 LINE L1 -504 7140 6410 5 942 510 181 33 49 chr6 46916106 46916228 -102600809 + LTRIS3 LTR ERV1 314 433 -79 5 942 907 318 180 19 chr6 46916364 46916797 -102600240 + MER44B DNA MER2_type 6 508 -42 5 942 628 62 82 0 chr6 46916906 46917003 -102600034 + L1Md_F2 LINE L1 6464 6568 -14 5 942 329 276 0 0 chr6 46917622 46917698 -102599339 - B1F SINE Alu -51 98 23 5 942 554 239 108 0 chr6 46918453 46918629 -102598408 + L1MA8 LINE L1 3372 3566 -2577 5 942 2299 247 142 22 chr6 46918802 46920010 -102597027 + L1MA8 LINE L1 3641 4992 -1148 5 942 949 261 172 34 chr6 46920003 46920716 -102596321 + L1MA8 LINE L1 5354 6165 -126 5 942 183 237 11 21 chr6 46920734 46920829 -102596208 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 942 303 28 0 0 chr6 46920845 46920881 -102596156 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 6 942 2449 3 0 0 chr6 46921071 46921362 -102595675 + L1_Mm LINE L1 5036 5326 -557 6 942 294 351 80 44 chr6 46921415 46921665 -102595372 + MIRb SINE MIR 9 267 -1 6 942 1121 286 66 36 chr6 46921928 46922291 -102594746 + MTE2b LTR MaLR 1 374 -5 6 942 262 294 0 14 chr6 46923166 46923235 -102593802 + MER5A DNA MER1_type 120 187 -2 6 943 341 264 77 31 chr6 46923941 46924105 -102592932 - L1MA5 LINE L1 -332 5971 5801 6 943 1318 266 37 25 chr6 46924106 46924461 -102592576 - ORR1E LTR MaLR 0 359 1 6 943 230 0 33 0 chr6 46924485 46924515 -102592522 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 943 532 275 0 0 chr6 46924527 46924669 -102592368 - L1MA5 LINE L1 -518 5773 5632 6 943 441 0 0 0 chr6 46925584 46925633 -102591404 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 943 1442 146 0 9 chr6 46925901 46926129 -102590908 - URR1A DNA MER1_type 0 226 1 6 943 218 227 30 15 chr6 46926229 46926296 -102590741 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 943 261 291 63 0 chr6 46929039 46929118 -102587919 + B1F1 SINE Alu 37 120 -29 6 943 292 250 31 0 chr6 46929188 46929252 -102587785 + ID4_ SINE ID 2 67 -16 6 943 184 323 31 31 chr6 46931017 46931081 -102585956 - MIR SINE MIR -165 97 34 6 943 795 365 76 34 chr6 46931484 46932168 -102584869 + HAL1 LINE L1 1607 2319 -188 6 943 306 203 0 30 chr6 46932170 46932236 -102584801 - HAL1-3A_ME LINE L1 -819 2039 1976 6 943 234 91 0 0 chr6 46932238 46932271 -102584766 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 943 1221 211 84 19 chr6 46932394 46932717 -102584320 - RMER1B Other Other -676 390 47 6 943 255 394 31 0 chr6 46933814 46933941 -102583096 - L2c LINE L2 0 3387 3257 6 943 1146 175 38 14 chr6 46934162 46934371 -102582666 + B3 SINE B2 2 215 -1 6 943 488 293 63 57 chr6 46934490 46934649 -102582388 + RSINE1 SINE B4 6 165 0 6 943 467 213 0 7 chr6 46934650 46934787 -102582250 + (CA)n Simple_repeat Simple_repeat 2 137 0 6 943 22 0 0 0 chr6 46934839 46934861 -102582176 + AT_rich Low_complexity Low_complexity 1 22 0 6 943 287 341 33 0 chr6 46935129 46935220 -102581817 - MamRep605 Unknown Unknown -329 547 454 6 943 495 0 0 0 chr6 46935965 46936020 -102581017 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 6 943 449 276 100 23 chr6 46936026 46936156 -102580881 - ID_B1 SINE B4 -29 195 56 6 943 263 229 0 0 chr6 46936405 46936453 -102580584 + MER57E1 LTR ERV1 101 148 -224 6 943 389 271 284 6 chr6 46936500 46936676 -102580361 + B4 SINE B4 1 225 -67 6 943 793 282 48 28 chr6 46936759 46937007 -102580030 + MER2 DNA MER2_type 68 320 -25 6 943 422 289 29 88 chr6 46936999 46937170 -102579867 + MER57E1 LTR ERV1 196 356 -16 6 943 1714 54 0 22 chr6 46937876 46938103 -102578934 + L1Md_F2 LINE L1 6349 6570 -12 6 943 267 31 0 0 chr6 46938523 46938555 -102578482 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 943 24 0 0 0 chr6 46939771 46939795 -102577242 + AT_rich Low_complexity Low_complexity 1 24 0 6 943 408 305 63 102 chr6 46941919 46942222 -102574815 - ORR1E LTR MaLR -5 354 64 6 943 8029 135 10 2 chr6 46942285 46943584 -102573453 - Lx2B LINE L1 -2 6998 5690 6 943 9553 152 11 2 chr6 46943583 46945360 -102571677 + L1_Mur1 LINE L1 2190 3981 -1905 6 943 238 132 0 0 chr6 46945416 46945454 -102571583 - ORR1E LTR MaLR -339 40 3 6 943 21 36 0 0 chr6 46945534 46945562 -102571475 + AT_rich Low_complexity Low_complexity 1 28 0 6 943 200 360 47 0 chr6 46946336 46946422 -102570615 - L2c LINE L2 0 3426 3337 6 943 272 344 103 27 chr6 46946507 46946731 -102570306 - MIRb SINE MIR -26 242 2 6 943 230 356 43 0 chr6 46946748 46946872 -102570165 - L2c LINE L2 -177 3198 3070 6 943 255 241 0 69 chr6 46947886 46947944 -102569093 + ID4 SINE ID 27 80 -3 6 943 185 225 0 0 chr6 46948698 46948738 -102568299 - MIR SINE MIR -112 150 111 6 943 5505 37 0 0 chr6 46949256 46949907 -102567130 - L1Md_T LINE L1 0 6582 5932 6 943 455 54 0 39 chr6 46950815 46950892 -102566145 - L1Md_F2 LINE L1 -1 6581 6508 6 943 1337 51 0 11 chr6 46950892 46951069 -102565968 + L1Md_F2 LINE L1 5653 5827 -755 6 943 474 18 0 0 chr6 46951865 46951920 -102565117 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 943 252 326 0 39 chr6 46952719 46952821 -102564216 - PB1D10 SINE Alu -6 111 14 6 943 186 43 0 0 chr6 46953818 46953841 -102563196 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 943 345 236 274 18 chr6 46954651 46954819 -102562218 - ID_B1 SINE B4 -2 222 12 6 943 2092 311 49 30 chr6 46955847 46956874 -102560163 - Lx9 LINE L1 -182 7462 6417 6 943 2265 216 191 24 chr6 46956917 46957767 -102559270 + L1_Rod LINE L1 3996 4987 -860 6 943 244 318 0 96 chr6 46957889 46957983 -102559054 - B4A SINE B4 -6 286 202 6 943 191 312 32 21 chr6 46958481 46958576 -102558461 + L3 LINE CR1 4365 4460 -29 6 943 566 39 0 13 chr6 46959048 46959126 -102557911 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 6 943 419 311 24 6 chr6 46959130 46959298 -102557739 - Lx9 LINE L1 -221 7423 7253 6 943 574 340 51 27 chr6 46961162 46961455 -102555582 - MER77 LTR ERVL -8 599 300 6 943 547 280 78 31 chr6 46962008 46962329 -102554708 - L1MA5 LINE L1 -4 6296 5961 6 943 194 291 73 0 chr6 46962727 46962782 -102554255 - L2a LINE L2 0 3426 3368 6 943 231 305 105 0 chr6 46963237 46963332 -102553705 - L2a LINE L2 -1685 1734 1630 6 943 248 329 62 12 chr6 46964060 46964140 -102552897 + B3A SINE B2 85 168 -30 6 943 271 367 81 17 chr6 46964396 46964568 -102552469 - MLT1L LTR MaLR -330 280 98 6 943 710 317 137 35 chr6 46964662 46965094 -102551943 + LTR40a LTR ERVL 8 483 -36 6 943 180 0 0 0 chr6 46965554 46965574 -102551463 + (TTCCC)n Simple_repeat Simple_repeat 4 23 0 6 943 1392 284 39 41 chr6 46965749 46966212 -102550825 + Lx8 LINE L1 6812 7273 -200 6 943 240 188 0 0 chr6 46966247 46966295 -102550742 + Lx8 LINE L1 7424 7471 -2 6 943 273 311 0 26 chr6 46967802 46967878 -102549159 + MER5B DNA MER1_type 1 74 -104 6 943 525 302 53 59 chr6 46967900 46967980 -102549057 - Lx9 LINE L1 -17 7627 7559 6 943 474 120 0 0 chr6 46967980 46968055 -102548982 + (CA)n Simple_repeat Simple_repeat 1 75 0 6 943 525 302 53 59 chr6 46968055 46968312 -102548725 - Lx9 LINE L1 -86 7558 7292 6 943 7764 129 32 37 chr6 46968351 46970750 -102546287 - Lx LINE L1 0 6654 4270 6 943 2093 232 12 26 chr6 46970752 46971260 -102545777 - Lx9 LINE L1 -408 7236 6736 6 943 192 303 132 0 chr6 46971281 46971357 -102545680 + MIR SINE MIR 106 191 -71 6 943 654 126 0 0 chr6 46971939 46972042 -102544995 + (GGGA)n Simple_repeat Simple_repeat 2 104 0 6 943 965 311 100 11 chr6 46972323 46972775 -102544262 - Lx8 LINE L1 -11 7462 6971 6 943 24 67 0 0 chr6 46972851 46972896 -102544141 + AT_rich Low_complexity Low_complexity 1 45 0 6 943 5463 47 15 9 chr6 46973167 46973854 -102543183 - L1Md_F2 LINE L1 0 6582 5892 6 943 1115 76 14 0 chr6 46973854 46973999 -102543038 + B1_Mm SINE Alu 1 147 0 6 943 785 244 62 0 chr6 46974239 46974464 -102542573 + L1MA4A LINE L1 5692 5930 -373 6 943 184 314 191 6 chr6 46975174 46975331 -102541706 - L2 LINE L2 -1253 2166 1981 6 943 183 294 128 52 chr6 46975778 46975950 -102541087 + MIRb SINE MIR 53 237 -31 6 943 270 0 0 0 chr6 46977784 46977814 -102539223 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 943 302 332 61 8 chr6 46977992 46978126 -102538911 - MIR SINE MIR -64 144 2 6 943 815 270 69 108 chr6 46978354 46978737 -102538300 - MER67C LTR ERV1 -310 401 1 6 943 191 300 53 53 chr6 46979040 46979135 -102537902 + L3 LINE CR1 3210 3304 -1185 6 943 317 339 178 27 chr6 46979291 46979622 -102537415 + L2 LINE L2 2090 2470 -949 6 943 999 119 0 0 chr6 46979626 46979769 -102537268 + B2_Mm2 SINE B2 2 144 -51 6 943 380 97 16 0 chr6 46979770 46979832 -102537205 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 943 954 135 6 11 chr6 46979845 46980025 -102537012 + GA-rich Low_complexity Low_complexity 2 180 0 6 943 195 281 232 0 chr6 46980056 46980138 -102536899 + L2 LINE L2 2484 2584 -835 6 943 24 0 0 0 chr6 46980831 46980855 -102536182 + AT_rich Low_complexity Low_complexity 1 24 0 6 943 1908 140 107 0 chr6 46981875 46982203 -102534834 + ORR1B2 LTR MaLR 2 364 -3 6 943 576 294 67 129 chr6 46982613 46982889 -102534148 - MT2B LTR ERVL -238 363 105 6 943 789 41 0 0 chr6 46982889 46982986 -102534051 + (GGA)n Simple_repeat Simple_repeat 3 99 0 6 943 4919 74 18 0 chr6 46982986 46983647 -102533390 + L1_Mus3 LINE L1 5966 6638 0 6 943 576 294 67 129 chr6 46983647 46983756 -102533281 - MT2B LTR ERVL -497 104 2 6 943 228 219 0 52 chr6 46983828 46983905 -102533132 - ORR1A3-int LTR MaLR -1324 639 567 6 943 6181 169 31 9 chr6 46983913 46985075 -102531962 - MERVL_2A-int LTR ERVL -71 5690 4503 6 943 3514 63 59 4 chr6 46986419 46986896 -102530141 + L1_Mus3 LINE L1 6135 6637 -1 6 943 411 113 0 0 chr6 46986903 46986965 -102530072 + (GGAA)n Simple_repeat Simple_repeat 4 65 0 6 943 290 179 229 10 chr6 46987369 46987465 -102529572 + MIRb SINE MIR 116 232 -36 6 943 833 301 85 22 chr6 46988385 46988749 -102528288 - MLT1B LTR MaLR -8 382 4 6 943 3225 36 10 2 chr6 46989042 46989435 -102527602 + MTA_Mm LTR MaLR 1 396 0 6 943 801 228 64 6 chr6 46989553 46989725 -102527312 + B3 SINE B2 25 206 -10 6 943 228 290 188 0 chr6 46990954 46991023 -102526014 + ID SINE ID 1 82 -142 6 943 24 53 0 0 chr6 46991117 46991155 -102525882 + AT_rich Low_complexity Low_complexity 1 38 0 6 943 924 258 85 8 chr6 46991588 46991834 -102525203 + B4A SINE B4 23 287 -5 6 943 219 36 0 0 chr6 46991875 46991903 -102525134 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 943 905 203 69 0 chr6 46992195 46992397 -102524640 + B3 SINE B2 1 216 0 7 943 333 0 0 0 chr6 46992494 46992531 -102524506 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 7 943 487 326 65 12 chr6 46992648 46992971 -102524066 + L5 LINE RTE 1056 1395 -870 7 943 792 267 77 40 chr6 46993322 46993595 -102523442 - B4A SINE B4 -6 286 4 7 943 435 313 120 29 chr6 46993624 46993964 -102523073 - MLT2B3 LTR ERVL -61 501 46 7 943 242 226 59 88 chr6 46994464 46994566 -102522471 + MIRb SINE MIR 96 194 -74 7 943 234 333 0 13 chr6 46994651 46994727 -102522310 + CT-rich Low_complexity Low_complexity 3 77 0 7 943 192 125 0 0 chr6 46995079 46995111 -102521926 + (GGAGAA)n Simple_repeat Simple_repeat 1 32 0 7 943 378 107 0 0 chr6 46996574 46996630 -102520407 + (GAAAA)n Simple_repeat Simple_repeat 4 59 0 7 943 30 0 0 0 chr6 46997473 46997503 -102519534 + AT_rich Low_complexity Low_complexity 1 30 0 7 943 682 328 66 22 chr6 46997895 46998260 -102518777 - Lx8 LINE L1 -16 7457 7077 7 943 396 0 0 0 chr6 46998508 46998552 -102518485 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 943 188 67 0 32 chr6 46998780 46998811 -102518226 + (TTAA)n Simple_repeat Simple_repeat 2 31 0 7 943 2246 146 44 16 chr6 47000049 47000432 -102516605 + ORR1B1 LTR MaLR 1 394 0 1 943 550 274 90 66 chr6 47001856 47002067 -102514970 + B3A SINE B2 1 216 0 2 943 219 88 0 0 chr6 47002819 47002853 -102514184 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 3 943 255 220 40 0 chr6 47003236 47003286 -102513751 + MLT1D LTR MaLR 299 350 -155 4 943 257 254 15 0 chr6 47003359 47003426 -102513611 - MLT1A1 LTR MaLR -5 403 336 5 943 2379 176 85 26 chr6 47003428 47003935 -102513102 + RLTR31_Mur LTR ERVK 1 537 -16 6 943 2744 42 3 24 chr6 47003937 47004275 -102512762 - L1Md_F2 LINE L1 0 6582 6252 7 943 327 276 30 20 chr6 47004478 47004578 -102512459 - MLT1A1 LTR MaLR -270 138 38 5 943 5345 99 24 17 chr6 47005845 47006671 -102510366 + RLTR22_Mur LTR ERVK 1 832 -1016 8 943 241 0 51 85 chr6 47006944 47007003 -102510034 + (CACCC)n Simple_repeat Simple_repeat 5 61 0 9 943 369 306 76 57 chr6 47007005 47007216 -102509821 + RMER12 LTR ERVK 1108 1322 0 1 943 3795 28 28 9 chr6 47007443 47007871 -102509166 - RLTR10C LTR ERVK 0 436 1 1 943 422 211 19 25 chr6 47008246 47008406 -102508631 + GA-rich Low_complexity Low_complexity 3 161 0 1 943 1097 236 14 5 chr6 47009426 47009639 -102507398 - B3 SINE B2 0 216 2 1 943 33 43 0 0 chr6 47010926 47010973 -102506064 + AT_rich Low_complexity Low_complexity 1 47 0 1 943 820 126 225 0 chr6 47011148 47011299 -102505738 + URR1A DNA MER1_type 1 185 -41 1 943 396 309 7 48 chr6 47011697 47011843 -102505194 + B1F1 SINE Alu 1 140 -9 1 943 2428 91 137 0 chr6 47011877 47012272 -102504765 - RLTR47_MM LTR ERV1 -83 449 1 1 943 1017 288 35 14 chr6 47012342 47012758 -102504279 - RLTR6-int LTR ERV1 -65 7713 7040 1 943 2159 306 69 50 chr6 47013032 47014605 -102502432 - MuRRS4-int LTR ERV1 -1997 5609 2735 1 943 1123 330 47 36 chr6 47014676 47015746 -102501291 - MuRRS4-int LTR ERV1 -5244 2534 1200 1 943 183 140 60 0 chr6 47016390 47016440 -102500597 + GA-rich Low_complexity Low_complexity 1 53 0 2 943 24 32 0 0 chr6 47016550 47016581 -102500456 + AT_rich Low_complexity Low_complexity 1 31 0 2 943 471 287 12 37 chr6 47016617 47016780 -102500257 + Lx4B LINE L1 6896 7054 -4 2 943 386 331 73 16 chr6 47017287 47017527 -102499510 - MIRb SINE MIR -16 252 1 2 943 2592 84 0 0 chr6 47017952 47018272 -102498765 + L1_Mus2 LINE L1 6247 6566 0 2 943 370 175 0 0 chr6 47018348 47018405 -102498632 - HAL1-3A_ME LINE L1 -826 2032 1976 2 943 449 319 163 21 chr6 47018474 47018700 -102498337 - B4 SINE B4 -20 272 15 2 943 239 306 0 109 chr6 47018741 47018851 -102498186 + RMER4B LTR ERVK 458 555 -30 2 943 216 259 0 0 chr6 47018861 47018919 -102498118 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 943 198 103 0 0 chr6 47018919 47018948 -102498089 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 943 466 286 104 45 chr6 47019634 47019788 -102497249 + RSINE1 SINE B4 3 165 0 3 943 193 135 39 0 chr6 47019826 47019878 -102497159 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 3 943 2731 314 65 35 chr6 47019887 47021149 -102495888 - Lx8 LINE L1 -2 7471 6172 3 943 616 293 117 0 chr6 47022312 47022517 -102494520 + MLT2B5 LTR ERVL 77 305 -296 3 943 480 271 162 21 chr6 47023328 47023569 -102493468 + ORSL DNA Tip100 1 275 0 3 943 1651 229 38 6 chr6 47023709 47024052 -102492985 + MTE2b LTR MaLR 26 379 0 3 943 907 312 33 49 chr6 47024435 47024802 -102492235 - MLT2B2 LTR ERVL -19 496 136 3 943 344 281 12 12 chr6 47024910 47024993 -102492044 - Lx8 LINE L1 -160 7313 7231 3 943 389 256 52 58 chr6 47025051 47025205 -102491832 - MLT2B2 LTR ERVL -386 168 17 3 943 347 208 40 40 chr6 47025269 47025280 -102491757 - RCHARR1 DNA MER1_type -128 846 839 3 943 1117 83 0 27 chr6 47025280 47025428 -102491609 - B1_Mus1 SINE Alu 0 148 5 3 943 347 208 40 40 chr6 47025428 47025516 -102491521 - RCHARR1 DNA MER1_type -136 838 747 3 943 1322 299 29 27 chr6 47025532 47025945 -102491092 - RCHARR1 DNA MER1_type -557 417 4 3 943 419 236 127 54 chr6 47026255 47026307 -102490730 - RCHARR1 DNA MER1_type -25 949 905 4 943 1147 289 102 0 chr6 47026307 47026650 -102490387 - MTEb LTR MaLR -1 378 1 4 943 419 236 127 54 chr6 47026650 47026763 -102490274 - RCHARR1 DNA MER1_type -70 904 772 4 943 304 176 87 14 chr6 47026774 47026843 -102490194 - RCHARR1 DNA MER1_type -512 462 389 4 943 1172 182 29 5 chr6 47026851 47027061 -102489976 + B3 SINE B2 2 216 0 4 943 945 226 91 30 chr6 47027095 47027360 -102489677 - RCHARR1 DNA MER1_type -569 405 125 4 943 436 250 167 24 chr6 47027446 47027614 -102489423 - MIR SINE MIR -65 197 6 4 943 268 171 129 0 chr6 47027893 47027963 -102489074 - Charlie7a DNA MER1_type -70 202 124 4 943 246 81 0 0 chr6 47028494 47028531 -102488506 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 943 477 0 0 0 chr6 47028531 47028583 -102488454 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 943 349 224 11 23 chr6 47029244 47029331 -102487706 - Lx8 LINE L1 -1 7472 7387 4 943 289 352 49 36 chr6 47029373 47029597 -102487440 + L4 LINE RTE 930 1156 -873 4 943 591 306 78 39 chr6 47029708 47029963 -102487074 - B4 SINE B4 -19 273 9 4 943 405 0 0 0 chr6 47030417 47030462 -102486575 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 943 751 166 34 54 chr6 47031153 47031300 -102485737 - B1_Mur2 SINE Alu -5 144 1 5 943 915 232 63 15 chr6 47031474 47031680 -102485357 + B3 SINE B2 1 216 0 5 943 227 373 32 41 chr6 47031692 47031815 -102485222 - L2c LINE L2 -15 3372 3251 5 943 279 143 0 20 chr6 47032394 47032444 -102484593 + MTEb LTR MaLR 322 370 -9 5 943 225 0 0 0 chr6 47033176 47033201 -102483836 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 943 2851 132 26 104 chr6 47033240 47033672 -102483365 - RLTR28 LTR ERVL 0 524 106 5 943 4348 114 3 8 chr6 47033672 47034266 -102482771 + Lx LINE L1 6058 6648 -6 5 943 2851 132 26 104 chr6 47034266 47034401 -102482636 - RLTR28 LTR ERVL -419 105 1 5 943 226 267 0 0 chr6 47034713 47034758 -102482279 + ZP3AR Satellite Satellite 48 92 -120 5 943 281 287 13 7 chr6 47034722 47034823 -102482214 + ID4 SINE ID 15 114 -38 5 943 725 258 10 44 chr6 47034947 47035150 -102481887 + B3A SINE B2 3 198 0 6 943 221 298 55 46 chr6 47035264 47035367 -102481670 + MER5B DNA MER1_type 1 105 -73 6 943 2599 167 98 23 chr6 47035367 47035895 -102481142 - RLTR12A LTR ERVK 0 568 1 6 943 220 375 59 55 chr6 47035988 47036225 -102480812 + L2b LINE L2 3038 3275 -100 6 943 330 279 47 0 chr6 47037738 47037824 -102479213 - B4A SINE B4 -202 90 1 6 943 470 315 7 65 chr6 47038003 47038156 -102478881 - B1F SINE Alu -1 148 5 6 943 193 286 48 104 chr6 47038557 47038682 -102478355 - MIRc SINE MIR -125 143 26 6 943 259 257 61 52 chr6 47039952 47040067 -102476970 + MER63B DNA AcHobo 318 433 -3 6 943 411 332 128 16 chr6 47040105 47040356 -102476681 - MamRep1161 DNA TcMar -673 284 6 6 943 22 0 0 0 chr6 47040867 47040889 -102476148 + AT_rich Low_complexity Low_complexity 1 22 0 6 943 534 338 59 105 chr6 47040901 47041205 -102475832 + B4 SINE B4 3 292 0 7 943 736 11 21 0 chr6 47041210 47041303 -102475734 + (GA)n Simple_repeat Simple_repeat 2 96 0 7 943 213 355 0 0 chr6 47042856 47042918 -102474119 + L2b LINE L2 3312 3373 -2 7 943 211 267 83 0 chr6 47043042 47043102 -102473935 + L2c LINE L2 3291 3355 -32 7 943 618 250 83 0 chr6 47043755 47043887 -102473150 + RSINE1 SINE B4 2 144 -21 7 943 539 85 0 12 chr6 47043898 47043981 -102473056 + (CATA)n Simple_repeat Simple_repeat 4 85 0 7 943 305 257 54 0 chr6 47043987 47044061 -102472976 + B1F1 SINE Alu 7 84 -65 7 943 622 263 80 29 chr6 47044108 47044382 -102472655 - RLTR15 LTR ERVK -27 332 45 7 943 22 0 0 0 chr6 47045158 47045180 -102471857 + AT_rich Low_complexity Low_complexity 1 22 0 7 943 507 200 18 45 chr6 47045216 47045326 -102471711 - PB1D10 SINE Alu 0 117 11 7 943 334 293 20 29 chr6 47045241 47045343 -102471694 - ID_B1 SINE B4 -48 176 76 8 943 4799 27 0 0 chr6 47046008 47046527 -102470510 - L1Md_T LINE L1 0 6582 6064 8 943 598 301 82 56 chr6 47046878 47047145 -102469892 - B4 SINE B4 -16 276 3 8 943 5780 194 97 38 chr6 47047375 47047409 -102469628 - Lx5 LINE L1 -83 6967 6932 8 943 201 39 0 0 chr6 47047409 47047435 -102469602 + (CCA)n Simple_repeat Simple_repeat 1 26 0 8 943 5780 169 78 25 chr6 47047435 47048983 -102468054 - Lx5 LINE L1 -119 6931 5302 8 943 2066 49 0 8 chr6 47049359 47049606 -102467431 + L1Md_F2 LINE L1 6330 6574 -8 8 943 288 186 0 0 chr6 47049784 47049843 -102467194 + A-rich Low_complexity Low_complexity 1 59 0 8 943 1194 63 0 14 chr6 47049871 47049882 -102467155 - B1_Mus2 SINE Alu 0 147 139 8 943 221 0 0 33 chr6 47049882 47049912 -102467125 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 943 1194 63 0 14 chr6 47049912 47050045 -102466992 - B1_Mus2 SINE Alu -9 138 6 8 943 316 338 66 19 chr6 47050103 47050314 -102466723 + L1ME4a LINE L1 5695 5915 -209 8 943 299 294 100 31 chr6 47050862 47051092 -102465945 - MIR SINE MIR -9 259 17 9 943 233 253 51 0 chr6 47051293 47051372 -102465665 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 9 943 414 0 0 0 chr6 47051998 47052044 -102464993 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 943 426 39 0 0 chr6 47052044 47052095 -102464942 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 943 222 287 94 47 chr6 47052153 47052259 -102464778 + MIR SINE MIR 32 142 -120 9 943 1495 197 48 58 chr6 47052340 47052718 -102464319 - ORR1D1 LTR MaLR 0 374 1 9 943 211 158 26 0 chr6 47053813 47053851 -102463186 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 9 943 802 281 11 0 chr6 47053893 47054071 -102462966 + B4A SINE B4 109 288 -4 9 943 222 156 0 0 chr6 47054081 47054126 -102462911 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 117 660 324 137 33 chr6 47054621 47055570 -102461467 - L2a LINE L2 -86 3340 2294 9 944 1669 26 11 0 chr6 47056057 47056246 -102460791 - B2_Mm1a SINE B2 -1 192 2 1 944 600 296 23 7 chr6 47056467 47056657 -102460380 - B3A SINE B2 0 198 5 1 944 539 160 9 0 chr6 47056936 47057036 -102460001 + GA-rich Low_complexity Low_complexity 4 104 0 1 944 1536 22 0 0 chr6 47057036 47057216 -102459821 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 944 388 235 0 12 chr6 47058097 47058179 -102458858 - ID4 SINE ID 0 83 3 1 944 667 281 20 0 chr6 47058231 47058377 -102458660 + B3A SINE B2 2 150 -48 1 944 498 17 0 0 chr6 47058379 47058438 -102458599 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 944 806 324 53 3 chr6 47058628 47058947 -102458090 - MER2 DNA MER2_type -9 336 2 1 944 744 108 58 98 chr6 47059120 47059294 -102457743 - URR1B DNA MER1_type 0 225 59 1 944 546 258 32 26 chr6 47060151 47060306 -102456731 + RSINE1 SINE B4 3 158 -7 1 944 282 56 0 0 chr6 47060306 47060342 -102456695 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1 944 2593 144 80 24 chr6 47060375 47060838 -102456199 - Lx2B LINE L1 -5 6995 6507 1 944 5308 138 1 59 chr6 47060838 47061749 -102455288 + Lx2 LINE L1 5651 6509 -488 1 944 6429 225 42 24 chr6 47061856 47062380 -102454657 - Lx6 LINE L1 -49 7411 6878 1 944 477 0 0 0 chr6 47062380 47062433 -102454604 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 944 342 0 0 0 chr6 47062433 47062470 -102454567 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 944 6429 225 42 24 chr6 47062470 47063366 -102453671 - Lx6 LINE L1 -583 6877 5965 1 944 737 119 68 0 chr6 47063366 47063484 -102453553 - B1_Mus1 SINE Alu -21 127 2 1 944 242 264 24 16 chr6 47063484 47063511 -102453526 - ORR1B1-int LTR MaLR -862 647 620 1 944 6940 155 132 20 chr6 47063518 47063635 -102453402 - Lx6 LINE L1 -80 5800 5682 1 944 586 0 0 26 chr6 47063635 47063711 -102453326 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 1 944 6940 155 132 20 chr6 47063711 47064586 -102452451 - Lx6 LINE L1 -199 5681 4667 1 944 297 0 0 0 chr6 47064586 47064619 -102452418 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 944 6940 155 132 20 chr6 47064619 47065055 -102451982 - Lx6 LINE L1 -1214 4666 4212 1 944 5528 133 307 22 chr6 47065046 47065553 -102451484 - Lx6 LINE L1 -2975 2905 2408 1 944 249 33 0 0 chr6 47065553 47065583 -102451454 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 944 5528 159 220 23 chr6 47065583 47066808 -102450229 - Lx6 LINE L1 -3473 2407 778 1 944 226 271 0 76 chr6 47066808 47066900 -102450137 + PB1D10 SINE Alu 32 116 -1 1 944 27 29 0 0 chr6 47067728 47067762 -102449275 + AT_rich Low_complexity Low_complexity 1 34 0 1 944 824 314 22 6 chr6 47067819 47068133 -102448904 - Lx9 LINE L1 -149 7495 7177 1 944 1711 282 56 11 chr6 47068135 47068655 -102448382 - Lx9 LINE L1 -685 6959 6417 1 944 297 0 0 0 chr6 47074686 47074719 -102442318 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 944 21 0 0 0 chr6 47075435 47075456 -102441581 + AT_rich Low_complexity Low_complexity 1 21 0 1 944 189 0 0 0 chr6 47075974 47075995 -102441042 + (T)n Simple_repeat Simple_repeat 1 21 0 1 944 1049 101 0 0 chr6 47075999 47076147 -102440890 - B1_Mus1 SINE Alu 0 148 1 1 944 758 222 25 60 chr6 47076472 47076673 -102440364 + B3A SINE B2 5 198 0 1 944 753 224 14 0 chr6 47076674 47076821 -102440216 + B1_Mur4 SINE Alu 1 149 -1 1 944 225 159 0 0 chr6 47076823 47076867 -102440170 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 944 2364 136 19 13 chr6 47077272 47077644 -102439393 + ORR1C1 LTR MaLR 1 374 -4 1 944 575 39 26 0 chr6 47077827 47077904 -102439133 + (TTATA)n Simple_repeat Simple_repeat 1 79 0 1 944 4504 51 5 16 chr6 47078251 47078829 -102438208 - L1Md_F3 LINE L1 -14 6570 5999 1 944 234 291 0 0 chr6 47079191 47079246 -102437791 + L1ME4a LINE L1 5977 6031 -93 1 944 21 0 0 0 chr6 47079308 47079329 -102437708 + AT_rich Low_complexity Low_complexity 1 21 0 1 944 213 39 0 0 chr6 47079329 47079355 -102437682 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 944 204 200 0 0 chr6 47080356 47080401 -102436636 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 944 243 240 19 77 chr6 47080432 47080536 -102436501 - MIR SINE MIR -29 233 136 1 944 495 217 34 51 chr6 47081792 47081967 -102435070 - MER44D DNA MER2_type -47 658 487 1 944 1127 323 93 46 chr6 47082101 47082305 -102434732 - MER44D DNA MER2_type -1 704 490 1 944 889 168 0 0 chr6 47082305 47082448 -102434589 + B1_Mus2 SINE Alu 5 147 0 1 944 1127 323 93 46 chr6 47082448 47082911 -102434126 - MER44D DNA MER2_type -216 489 6 1 944 378 42 0 0 chr6 47083259 47083307 -102433730 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 944 284 324 37 0 chr6 47084558 47084666 -102432371 - RMER15 LTR ERVL 0 575 464 1 944 265 243 115 77 chr6 47084665 47084821 -102432216 - RMER15 LTR ERVL -392 183 22 1 944 776 148 44 13 chr6 47084853 47085011 -102432026 + URR1A DNA MER1_type 44 206 -20 1 944 237 228 53 0 chr6 47085054 47085111 -102431926 - RMER15 LTR ERVL -515 60 1 1 944 243 79 0 0 chr6 47085288 47085326 -102431711 + (GTTTG)n Simple_repeat Simple_repeat 5 42 0 1 944 420 268 81 71 chr6 47085538 47085735 -102431302 - L1MA5 LINE L1 -291 6009 5811 1 944 23 54 0 0 chr6 47086164 47086201 -102430836 + AT_rich Low_complexity Low_complexity 1 37 0 1 944 761 316 24 24 chr6 47086262 47086557 -102430480 - Lx9 LINE L1 -172 7472 7178 1 944 1730 284 56 10 chr6 47086562 47087081 -102429956 - Lx9 LINE L1 -685 6959 6417 1 944 369 0 0 0 chr6 47093120 47093161 -102423876 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 944 456 51 0 0 chr6 47094115 47094174 -102422863 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 944 1036 108 0 0 chr6 47095514 47095662 -102421375 - B1_Mus1 SINE Alu 0 148 1 1 944 765 246 15 50 chr6 47095985 47096186 -102420851 + B3A SINE B2 5 198 0 1 944 732 231 14 0 chr6 47096187 47096334 -102420703 + B1_Mur4 SINE Alu 1 149 -1 1 944 201 171 0 0 chr6 47096336 47096371 -102420666 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 944 2350 136 19 13 chr6 47096781 47097153 -102419884 + ORR1C1 LTR MaLR 1 374 -4 1 944 509 56 28 0 chr6 47097336 47097408 -102419629 + (TTATA)n Simple_repeat Simple_repeat 1 74 0 1 944 447 19 0 0 chr6 47098243 47098295 -102418742 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 944 204 200 0 0 chr6 47099293 47099338 -102417699 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 944 251 229 19 77 chr6 47099369 47099473 -102417564 - MIR SINE MIR -29 233 136 1 944 495 217 34 51 chr6 47100727 47100902 -102416135 - MER44D DNA MER2_type -47 658 487 1 944 1127 323 93 46 chr6 47101036 47101240 -102415797 - MER44D DNA MER2_type -1 704 490 1 944 889 168 0 0 chr6 47101240 47101383 -102415654 + B1_Mus2 SINE Alu 5 147 0 1 944 1127 323 93 46 chr6 47101383 47101846 -102415191 - MER44D DNA MER2_type -216 489 6 1 944 378 42 0 0 chr6 47102194 47102242 -102414795 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 944 284 324 37 0 chr6 47103493 47103601 -102413436 - RMER15 LTR ERVL 0 575 464 1 944 265 243 115 77 chr6 47103600 47103756 -102413281 - RMER15 LTR ERVL -392 183 22 1 944 776 148 44 13 chr6 47103788 47103946 -102413091 + URR1A DNA MER1_type 44 206 -20 1 944 237 228 53 0 chr6 47103989 47104046 -102412991 - RMER15 LTR ERVL -515 60 1 1 944 243 79 0 0 chr6 47104223 47104261 -102412776 + (GTTTG)n Simple_repeat Simple_repeat 5 42 0 1 944 420 268 81 71 chr6 47104473 47104670 -102412367 - L1MA5 LINE L1 -291 6009 5811 1 944 23 54 0 0 chr6 47105099 47105136 -102411901 + AT_rich Low_complexity Low_complexity 1 37 0 1 944 761 316 24 24 chr6 47105197 47105492 -102411545 - Lx9 LINE L1 -172 7472 7178 1 944 1730 284 56 10 chr6 47105497 47106016 -102411021 - Lx9 LINE L1 -685 6959 6417 1 944 333 0 0 0 chr6 47112052 47112089 -102404948 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 944 456 51 0 0 chr6 47113043 47113102 -102403935 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 944 1036 108 0 0 chr6 47114442 47114590 -102402447 - B1_Mus1 SINE Alu 0 148 1 1 944 765 246 15 50 chr6 47114913 47115114 -102401923 + B3A SINE B2 5 198 0 1 944 732 231 14 0 chr6 47115115 47115262 -102401775 + B1_Mur4 SINE Alu 1 149 -1 1 944 201 171 0 0 chr6 47115264 47115299 -102401738 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 944 2350 136 19 13 chr6 47115709 47116081 -102400956 + ORR1C1 LTR MaLR 1 374 -4 1 944 509 56 28 0 chr6 47116264 47116336 -102400701 + (TTATA)n Simple_repeat Simple_repeat 1 74 0 1 944 411 21 0 0 chr6 47117171 47117219 -102399818 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 944 204 200 0 0 chr6 47118217 47118262 -102398775 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 944 251 229 19 77 chr6 47118293 47118397 -102398640 - MIR SINE MIR -29 233 136 1 944 467 220 40 51 chr6 47119653 47119830 -102397207 - MER44D DNA MER2_type -47 658 484 1 944 1022 334 76 36 chr6 47119963 47120164 -102396873 - MER44D DNA MER2_type -1 704 507 1 944 859 151 14 14 chr6 47120164 47120312 -102396725 + B1_Mur3 SINE Alu 2 149 0 1 944 1022 334 76 36 chr6 47120312 47120768 -102396269 - MER44D DNA MER2_type -199 506 21 1 944 327 232 12 12 chr6 47121077 47121160 -102395877 - L1MA5A LINE L1 -403 5894 5812 1 944 288 292 0 0 chr6 47122749 47122821 -102394216 + ID4_ SINE ID 1 72 -11 1 944 584 266 56 25 chr6 47123038 47123235 -102393802 - B3 SINE B2 -13 203 1 1 944 625 218 262 46 chr6 47124000 47124240 -102392797 - B4A SINE B4 0 292 1 1 944 484 304 20 113 chr6 47124291 47124495 -102392542 - B3A SINE B2 -7 186 2 1 944 192 77 0 0 chr6 47124504 47124530 -102392507 + (T)n Simple_repeat Simple_repeat 1 26 0 1 944 606 196 54 0 chr6 47124577 47124689 -102392348 + B1_Mur1 SINE Alu 32 149 0 1 944 234 0 0 0 chr6 47124689 47124715 -102392322 + (A)n Simple_repeat Simple_repeat 1 26 0 1 944 2767 186 18 6 chr6 47126271 47126768 -102390269 + Lx5 LINE L1 6548 7050 0 1 944 441 131 103 51 chr6 47127580 47127698 -102389339 + RMER4B LTR ERVK 1 131 -454 1 944 1039 168 31 5 chr6 47127699 47127890 -102389147 + RMER4B LTR ERVK 390 585 0 1 944 898 302 7 25 chr6 47128492 47128767 -102388270 + B4A SINE B4 9 278 -14 1 944 4745 15 0 4 chr6 47129179 47129709 -102387328 - L1Md_T LINE L1 0 6582 6055 1 944 567 0 0 0 chr6 47130798 47130861 -102386176 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 944 244 257 90 25 chr6 47130879 47130979 -102386058 + PB1 SINE Alu 17 120 -7 1 944 268 226 16 31 chr6 47130991 47131055 -102385982 + ID2 SINE ID 5 67 -16 1 944 263 262 93 23 chr6 47131055 47131077 -102385960 + ID_B1 SINE B4 5 96 -128 1 944 252 290 74 106 chr6 47131429 47131618 -102385419 - MER77 LTR ERVL -208 399 217 1 944 270 0 0 0 chr6 47131918 47131948 -102385089 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 944 301 29 0 0 chr6 47131948 47131983 -102385054 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 944 754 96 15 0 chr6 47131983 47132118 -102384919 + (TC)n Simple_repeat Simple_repeat 2 138 0 2 944 1224 253 110 16 chr6 47132916 47133298 -102383739 + MTD LTR MaLR 2 419 0 2 944 210 342 74 16 chr6 47134898 47135020 -102382017 - MIR SINE MIR -59 149 21 2 944 180 0 0 0 chr6 47135571 47135591 -102381446 + (A)n Simple_repeat Simple_repeat 1 20 0 2 944 180 111 0 0 chr6 47136112 47136139 -102380898 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 944 212 170 57 0 chr6 47136381 47136434 -102380603 + PB1D10 SINE Alu 62 117 0 2 944 1645 178 104 13 chr6 47137283 47137659 -102379378 + MTD LTR MaLR 2 411 -8 2 944 616 206 99 0 chr6 47139093 47139224 -102377813 - B1F SINE Alu -5 144 1 2 944 1053 180 120 0 chr6 47139291 47139491 -102377546 - URR1A DNA MER1_type -2 224 1 2 944 203 351 118 5 chr6 47139643 47139829 -102377208 + L3 LINE CR1 3825 4031 -458 2 944 244 184 65 174 chr6 47139909 47140001 -102377036 - B4A SINE B4 -16 276 195 2 944 2619 146 62 8 chr6 47140045 47140542 -102376495 - RLTR17 LTR ERVK -70 622 99 2 944 617 247 115 26 chr6 47140566 47140757 -102376280 - B4A SINE B4 -84 208 1 2 944 1217 180 19 0 chr6 47140956 47141162 -102375875 + B3 SINE B2 2 211 -5 2 944 24 53 0 0 chr6 47141347 47141385 -102375652 + AT_rich Low_complexity Low_complexity 1 38 0 2 944 389 209 177 8 chr6 47141906 47141996 -102375041 - Lx6 LINE L1 -1237 6223 6124 2 944 294 29 0 0 chr6 47141996 47142031 -102375006 + (CACG)n Simple_repeat Simple_repeat 1 35 0 2 944 389 209 177 8 chr6 47142031 47142070 -102374967 - Lx6 LINE L1 -1337 6123 6074 2 944 644 246 8 0 chr6 47142059 47142189 -102374848 + Lx6 LINE L1 7208 7338 -122 2 944 270 0 0 0 chr6 47142211 47142241 -102374796 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 944 883 285 119 29 chr6 47143661 47144106 -102372931 - RMER5 LTR ERV1 -7 527 43 2 944 535 339 107 7 chr6 47144322 47144631 -102372406 - LTR31 LTR ERV1 -138 481 142 2 944 2867 126 8 144 chr6 47144632 47145244 -102371793 - RLTR24 LTR ERV1 0 529 1 2 944 443 318 61 35 chr6 47145553 47145752 -102371285 - MIR SINE MIR -17 251 44 2 944 189 0 0 0 chr6 47149740 47149761 -102367276 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2 944 238 303 13 0 chr6 47149761 47149837 -102367200 + MLT1I LTR MaLR 335 411 0 2 944 2063 164 24 50 chr6 47150031 47150449 -102366588 + MTB_Mm LTR MaLR 1 407 0 2 944 1830 184 13 59 chr6 47151228 47151620 -102365417 - ORR1D1 LTR MaLR 0 374 1 2 944 522 0 0 0 chr6 47151683 47151741 -102365296 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 944 274 292 15 0 chr6 47151813 47151878 -102365159 + RCHARR1 DNA MER1_type 4 69 -905 2 944 261 269 0 0 chr6 47151911 47151989 -102365048 + A-rich Low_complexity Low_complexity 1 78 0 2 944 3927 171 31 5 chr6 47151996 47152670 -102364367 - RLTR17 LTR ERVK 0 692 1 2 944 472 289 58 0 chr6 47152737 47152910 -102364127 + RCHARR1 DNA MER1_type 197 379 -595 2 944 438 69 0 0 chr6 47153489 47153547 -102363490 + (GGGA)n Simple_repeat Simple_repeat 2 59 0 2 944 675 266 130 0 chr6 47154078 47154262 -102362775 - ID_B1 SINE B4 0 224 17 2 944 331 167 39 0 chr6 47155395 47155497 -102361540 + (CAGAGA)n Simple_repeat Simple_repeat 2 107 0 2 944 180 350 16 48 chr6 47155768 47155894 -102361143 - L2 LINE L2 -558 2861 2740 2 944 296 104 506 0 chr6 47156623 47156700 -102360337 + URR1A DNA MER1_type 5 120 -106 2 944 3511 59 0 0 chr6 47156709 47157133 -102359904 - L1_Mus1 LINE L1 0 6567 6144 2 944 2305 80 18 6 chr6 47157131 47157481 -102359556 + L1_Mus3 LINE L1 6299 6638 0 2 944 3128 114 25 33 chr6 47157482 47157998 -102359039 + Lx LINE L1 6143 6654 0 2 944 1591 324 59 3 chr6 47158088 47158699 -102358338 - MER82 DNA MER2_type 0 653 9 2 944 423 271 23 11 chr6 47159456 47159628 -102357409 - MTD LTR MaLR -260 159 7 2 944 315 186 19 76 chr6 47160264 47160369 -102356668 - L1MC2 LINE L1 0 6344 6246 2 944 255 61 0 0 chr6 47160475 47160508 -102356529 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 944 584 250 56 0 chr6 47160679 47160823 -102356214 - RSINE1 SINE B4 -11 154 3 2 944 519 252 95 26 chr6 47160888 47161120 -102355917 - L1MC2 LINE L1 -302 6042 5795 2 944 1044 275 20 62 chr6 47162463 47162820 -102354217 - MTEa LTR MaLR 0 379 38 2 944 409 236 71 0 chr6 47164228 47164355 -102352682 + L1MA8 LINE L1 6156 6291 0 2 944 331 277 12 12 chr6 47164417 47164501 -102352536 + GA-rich Low_complexity Low_complexity 4 87 0 2 944 2594 165 42 2 chr6 47164511 47165008 -102352029 - RLTR11A2 LTR ERVK -10 517 1 2 944 693 0 0 0 chr6 47165008 47165085 -102351952 + (GGGA)n Simple_repeat Simple_repeat 2 78 0 2 944 660 124 0 0 chr6 47165258 47165363 -102351674 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 944 409 196 0 103 chr6 47167347 47167362 -102349675 + MT2B LTR ERVL 155 159 -442 2 944 649 127 0 10 chr6 47167362 47167465 -102349572 + B1_Mm SINE Alu 3 104 -43 2 944 367 244 17 8 chr6 47167590 47167710 -102349327 + (TA)n Simple_repeat Simple_repeat 2 122 0 2 944 203 152 0 21 chr6 47167756 47167803 -102349234 + (TATG)n Simple_repeat Simple_repeat 2 47 0 2 944 275 332 91 77 chr6 47167806 47168093 -102348944 - B4 SINE B4 0 292 2 2 944 21 0 0 0 chr6 47168256 47168277 -102348760 + AT_rich Low_complexity Low_complexity 1 21 0 2 944 201 64 41 41 chr6 47168743 47168792 -102348245 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 2 944 364 309 49 56 chr6 47169610 47169754 -102347283 + RSINE1 SINE B4 2 144 -21 2 944 278 256 33 22 chr6 47169927 47170019 -102347018 + L1MB3 LINE L1 6056 6148 -35 2 944 1271 48 0 14 chr6 47170034 47170182 -102346855 + B1_Mus2 SINE Alu 2 147 0 2 944 267 54 0 0 chr6 47170182 47170219 -102346818 + (A)n Simple_repeat Simple_repeat 1 37 0 2 944 219 337 30 0 chr6 47170233 47170334 -102346703 + MIR3 SINE MIR 93 196 -12 2 944 1363 107 6 0 chr6 47171837 47172014 -102345023 - B2_Mm1t SINE B2 -14 179 2 2 944 223 331 46 67 chr6 47172725 47172919 -102344118 + MIRb SINE MIR 18 207 -61 2 944 319 283 164 36 chr6 47173083 47173248 -102343789 - MLT1A0 LTR MaLR -171 194 9 2 944 249 270 14 0 chr6 47174606 47174680 -102342357 - HAL1 LINE L1 0 2507 2433 2 944 307 321 88 15 chr6 47174769 47174905 -102342132 - MER58B DNA MER1_type -1 340 195 2 944 383 210 0 0 chr6 47175183 47175245 -102341792 - ID4 SINE ID -11 72 11 2 944 239 309 29 29 chr6 47175274 47175414 -102341623 - HAL1 LINE L1 -484 2023 1884 2 944 479 324 68 38 chr6 47175611 47176140 -102340897 - HAL1 LINE L1 -929 1578 1034 2 944 279 303 0 38 chr6 47176219 47176298 -102340739 - ID4 SINE ID -5 78 3 2 944 261 305 50 40 chr6 47176405 47176504 -102340533 - HAL1 LINE L1 -1810 697 598 2 944 255 190 0 0 chr6 47176896 47176954 -102340083 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 944 22 35 0 0 chr6 47179388 47179417 -102337620 + AT_rich Low_complexity Low_complexity 1 29 0 2 944 214 279 191 0 chr6 47179910 47179978 -102337059 + ID4 SINE ID 3 83 0 2 944 548 270 39 10 chr6 47180227 47180433 -102336604 + Lx7 LINE L1 7484 7695 -1 2 944 497 148 22 22 chr6 47180611 47180749 -102336288 + (TAGA)n Simple_repeat Simple_repeat 2 139 0 2 944 430 165 16 0 chr6 47180758 47180885 -102336152 + (TA)n Simple_repeat Simple_repeat 1 129 0 2 944 198 0 0 0 chr6 47181447 47181469 -102335568 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 944 724 282 102 15 chr6 47181492 47181758 -102335279 + RMER15 LTR ERVL 273 561 -14 2 944 3375 219 32 68 chr6 47181905 47182810 -102334227 - Lx7 LINE L1 0 7696 6825 2 944 764 179 0 133 chr6 47183856 47184036 -102333001 - RLTR20D LTR ERVK 0 578 423 2 944 826 238 148 72 chr6 47184027 47184290 -102332747 - RLTR20D LTR ERVK -285 283 1 2 944 1401 163 18 0 chr6 47184581 47184802 -102332235 + URR1B DNA MER1_type 1 225 0 2 944 261 0 0 0 chr6 47185721 47185750 -102331287 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 945 487 301 21 35 chr6 47185978 47186119 -102330918 + B4A SINE B4 1 139 -153 2 945 399 233 0 11 chr6 47186258 47186345 -102330692 - MTE2b LTR MaLR 0 379 294 2 945 603 229 139 35 chr6 47186350 47186522 -102330515 - MTE2b LTR MaLR -189 190 1 2 945 234 283 39 14 chr6 47187354 47187453 -102329584 + MIRb SINE MIR 17 116 -152 2 945 258 106 0 0 chr6 47187969 47188016 -102329021 + (T)n Simple_repeat Simple_repeat 1 47 0 2 945 276 120 0 0 chr6 47188040 47188090 -102328947 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 945 216 186 0 0 chr6 47188364 47188423 -102328614 + A-rich Low_complexity Low_complexity 1 59 0 2 945 617 222 26 0 chr6 47189051 47189168 -102327869 + B3 SINE B2 9 128 -88 2 945 26 30 0 0 chr6 47190396 47190429 -102326608 + AT_rich Low_complexity Low_complexity 1 33 0 2 945 3545 30 8 0 chr6 47191113 47191506 -102325531 - MTA_Mm LTR MaLR 0 396 1 2 945 915 246 69 5 chr6 47191532 47191736 -102325301 + ID_B1 SINE B4 8 224 0 2 945 224 388 68 34 chr6 47192110 47192286 -102324751 + MIRb SINE MIR 79 260 -8 2 945 197 247 169 45 chr6 47192260 47192349 -102324688 - L2a LINE L2 0 3426 3327 2 945 1257 159 13 35 chr6 47192643 47192871 -102324166 - URR1B DNA MER1_type -2 223 1 2 945 724 253 23 6 chr6 47192948 47193123 -102323914 + B3A SINE B2 3 180 -18 2 945 225 0 0 0 chr6 47193710 47193735 -102323302 + (A)n Simple_repeat Simple_repeat 1 25 0 2 945 731 307 85 15 chr6 47196773 47197044 -102319993 + B4 SINE B4 3 292 0 2 945 349 156 13 13 chr6 47197060 47197138 -102319899 + (CATA)n Simple_repeat Simple_repeat 3 80 0 2 945 785 247 31 6 chr6 47197525 47197688 -102319349 - B3A SINE B2 -27 171 5 2 945 1269 178 19 5 chr6 47198677 47198886 -102318151 + B3 SINE B2 2 213 -3 2 945 252 254 48 0 chr6 47199975 47200038 -102316999 + L3 LINE CR1 3727 3792 -697 2 945 422 273 76 35 chr6 47201419 47201590 -102315447 - Lx7 LINE L1 -329 7367 7190 3 945 1142 248 132 29 chr6 47201810 47202151 -102314886 - MTEa LTR MaLR -3 376 1 3 945 182 62 0 30 chr6 47202727 47202760 -102314277 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 945 299 329 134 20 chr6 47203058 47203490 -102313547 - L2a LINE L2 -317 3109 2618 3 945 328 229 283 9 chr6 47203521 47203627 -102313410 + ID_B1 SINE B4 81 215 -9 3 945 495 305 61 61 chr6 47204228 47204490 -102312547 - ORR1E LTR MaLR 0 359 98 3 945 270 276 8 110 chr6 47204564 47204682 -102312355 - ORR1E LTR MaLR -271 108 3 3 945 402 186 14 0 chr6 47204721 47204791 -102312246 - B1_Mur1 SINE Alu 0 149 79 3 945 776 267 52 0 chr6 47209226 47209398 -102307639 - B3A SINE B2 -15 183 3 3 945 274 58 58 0 chr6 47209398 47209450 -102307587 + (TTTTTA)n Simple_repeat Simple_repeat 4 58 0 3 945 905 268 14 5 chr6 47209455 47209669 -102307368 - ID_B1 SINE B4 -1 223 8 3 945 21 0 0 0 chr6 47210399 47210420 -102306617 + AT_rich Low_complexity Low_complexity 1 21 0 3 945 207 0 0 0 chr6 47211002 47211025 -102306012 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 945 411 98 0 0 chr6 47211741 47211802 -102305235 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 945 421 330 161 13 chr6 47211830 47212060 -102304977 - RMER15 LTR ERVL -37 538 275 3 945 213 39 0 0 chr6 47212506 47212532 -102304505 + (T)n Simple_repeat Simple_repeat 1 26 0 3 945 2878 150 14 0 chr6 47212835 47213249 -102303788 - MTC LTR MaLR -1 420 1 3 945 255 333 64 43 chr6 47213396 47213537 -102303500 - L3 LINE CR1 -1073 3416 3273 3 945 251 323 103 22 chr6 47216715 47216851 -102300186 - MER113 DNA MER1_type -357 164 18 3 945 507 179 64 28 chr6 47217855 47217964 -102299073 + PB1D10 SINE Alu 5 117 0 3 945 191 278 0 0 chr6 47218087 47218144 -102298893 + MIRc SINE MIR 118 177 -91 3 945 818 288 159 32 chr6 47218152 47218461 -102298576 + ORR1E LTR MaLR 10 357 -2 3 945 248 289 101 77 chr6 47218643 47218812 -102298225 - MLT1A0 LTR MaLR -153 212 40 3 945 263 358 100 0 chr6 47219663 47219676 -102297361 + ID_B1 SINE B4 65 196 -28 3 945 294 311 112 9 chr6 47219676 47219783 -102297254 + B1F SINE Alu 1 118 -31 3 945 217 298 176 8 chr6 47222210 47222335 -102294702 + MIRb SINE MIR 75 220 -48 3 945 820 185 94 11 chr6 47222337 47222528 -102294509 + B3 SINE B2 1 207 -9 3 945 24 0 0 0 chr6 47222528 47222552 -102294485 + AT_rich Low_complexity Low_complexity 1 24 0 3 945 351 258 97 0 chr6 47223555 47223648 -102293389 + PB1D10 SINE Alu 14 115 -2 3 945 636 14 0 0 chr6 47223656 47223729 -102293308 + (GGGGA)n Simple_repeat Simple_repeat 4 76 0 3 945 398 284 120 0 chr6 47224001 47224184 -102292853 - MER34A LTR ERV1 -7 564 360 3 945 396 0 0 0 chr6 47224276 47224320 -102292717 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 945 1269 34 0 0 chr6 47224576 47224723 -102292314 + B1_Mm SINE Alu 1 147 0 3 945 281 47 23 0 chr6 47224768 47224811 -102292226 + (CAAAAA)n Simple_repeat Simple_repeat 6 49 0 3 945 756 272 42 0 chr6 47224812 47225003 -102292034 + B4A SINE B4 86 284 -8 3 945 222 358 148 7 chr6 47225485 47225634 -102291403 + MER5B DNA MER1_type 8 177 -1 3 945 311 231 26 0 chr6 47225696 47225774 -102291263 + ID4 SINE ID 2 81 -2 3 945 1102 209 212 10 chr6 47225787 47226082 -102290955 + MTEa LTR MaLR 5 359 -20 3 945 411 262 148 77 chr6 47226938 47227290 -102289747 + MTEa LTR MaLR 1 377 -2 3 945 293 326 18 74 chr6 47227293 47227578 -102289459 + L1M5 LINE L1 5262 5530 -594 3 945 662 252 173 8 chr6 47228188 47228436 -102288601 + B4A SINE B4 2 290 -2 3 945 200 315 0 14 chr6 47228451 47228525 -102288512 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 945 483 286 8 23 chr6 47229611 47229740 -102287297 - PB1 SINE Alu 0 127 1 3 945 696 309 15 10 chr6 47229751 47229954 -102287083 - ID_B1 SINE B4 -1 223 20 3 945 26 0 0 0 chr6 47229954 47229980 -102287057 + AT_rich Low_complexity Low_complexity 1 26 0 3 945 342 0 0 0 chr6 47230353 47230391 -102286646 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 945 558 304 6 37 chr6 47230583 47230747 -102286290 + RSINE1 SINE B4 6 164 -1 3 945 21 0 0 0 chr6 47230763 47230784 -102286253 + AT_rich Low_complexity Low_complexity 1 21 0 3 945 405 0 0 0 chr6 47231057 47231102 -102285935 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 945 431 270 60 17 chr6 47231107 47231224 -102285813 - RSINE1 SINE B4 -36 129 8 3 945 263 146 0 0 chr6 47231259 47231307 -102285730 + B3A SINE B2 1 48 -150 3 945 333 308 13 101 chr6 47233434 47233593 -102283444 + MTEa LTR MaLR 16 160 -219 3 945 243 79 0 0 chr6 47233922 47233960 -102283077 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 3 945 355 248 45 9 chr6 47234159 47234269 -102282768 + MER5A1 DNA MER1_type 35 148 -18 3 945 1125 91 0 0 chr6 47234723 47234866 -102282171 + B1_Mm SINE Alu 5 147 0 3 945 830 173 23 17 chr6 47234917 47235093 -102281944 - B2_Mm2 SINE B2 -17 178 2 3 945 1433 148 22 15 chr6 47235093 47235163 -102281874 - RMER5 LTR ERV1 -266 268 199 3 945 185 0 40 0 chr6 47235163 47235188 -102281849 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 945 1433 148 22 15 chr6 47235188 47235383 -102281654 - RMER5 LTR ERV1 -336 198 2 3 945 1412 169 137 14 chr6 47235700 47236065 -102280972 - RMER17C LTR ERVK 0 410 1 3 945 3751 112 36 102 chr6 47236234 47237038 -102279999 - RMER17A LTR ERVK 0 751 1 3 945 25 0 0 0 chr6 47237862 47237887 -102279150 + AT_rich Low_complexity Low_complexity 1 25 0 3 945 348 186 79 34 chr6 47238555 47238644 -102278393 - B3 SINE B2 -4 212 120 3 945 319 246 30 83 chr6 47238901 47239034 -102278003 - ORR1E LTR MaLR -162 197 72 3 945 1958 162 114 46 chr6 47239820 47240063 -102276974 - MTC LTR MaLR 0 421 196 3 945 522 0 0 0 chr6 47240063 47240121 -102276916 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 945 1958 162 114 46 chr6 47240121 47240271 -102276766 - MTC LTR MaLR -226 195 3 3 945 732 281 151 60 chr6 47240435 47240700 -102276337 + B4 SINE B4 2 290 -2 3 945 243 311 14 0 chr6 47241146 47241220 -102275817 + ID4 SINE ID 1 75 -8 3 945 261 59 176 0 chr6 47242453 47242504 -102274533 - ORR1D2 LTR MaLR -2 368 309 3 945 1042 186 0 151 chr6 47243005 47243264 -102273773 - ORR1D2 LTR MaLR -150 220 1 3 945 463 303 78 13 chr6 47243665 47243819 -102273218 + RSINE1 SINE B4 2 165 0 3 945 21 0 0 0 chr6 47243829 47243850 -102273187 + AT_rich Low_complexity Low_complexity 1 21 0 3 945 3486 66 20 6 chr6 47244040 47244529 -102272508 - LTRIS2 LTR ERV1 0 564 69 3 945 276 262 38 0 chr6 47244752 47244832 -102272205 + ID SINE ID 1 83 -141 3 945 212 137 20 0 chr6 47245266 47245317 -102271720 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 3 945 692 143 36 36 chr6 47245352 47245490 -102271547 + B1_Mur4 SINE Alu 13 150 0 3 945 284 289 93 0 chr6 47245562 47245659 -102271378 + MER2 DNA MER2_type 184 289 -56 3 945 241 314 29 63 chr6 47245898 47246105 -102270932 - RLTR41 LTR ERV1 -49 397 198 3 945 329 0 0 24 chr6 47246269 47246311 -102270726 + (TTTTTG)n Simple_repeat Simple_repeat 6 46 0 3 945 694 184 87 54 chr6 47246864 47247048 -102269989 + B3A SINE B2 1 190 -8 3 945 1180 305 68 8 chr6 47247312 47247976 -102269061 - L1ME2z LINE L1 -281 5892 5202 3 945 279 349 110 5 chr6 47247993 47248212 -102268825 - L1ME2z LINE L1 -3526 2620 2379 3 945 198 0 0 0 chr6 47251368 47251390 -102265647 + (A)n Simple_repeat Simple_repeat 1 22 0 3 945 445 228 105 8 chr6 47251416 47251541 -102265496 + B1F SINE Alu 13 194 -117 3 945 474 260 70 8 chr6 47252549 47252677 -102264360 + ID_B1 SINE B4 87 222 -2 3 945 494 268 0 24 chr6 47252692 47252818 -102264219 + RSINE1 SINE B4 4 126 -39 3 945 432 0 0 0 chr6 47252819 47252867 -102264170 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 945 1177 62 0 7 chr6 47252883 47253030 -102264007 + B1_Mus2 SINE Alu 2 147 0 3 945 352 240 53 23 chr6 47257476 47257608 -102259429 - MTD LTR MaLR -281 138 3 3 945 917 204 102 0 chr6 47258918 47259114 -102257923 + B3 SINE B2 1 216 0 3 945 291 320 60 0 chr6 47259609 47259709 -102257328 - B1F SINE Alu -31 118 13 3 945 571 51 0 0 chr6 47260023 47260101 -102256936 - B1_Mur4 SINE Alu 0 150 73 3 945 230 213 46 130 chr6 47260113 47260221 -102256816 + L1MCa LINE L1 1110 1208 -5300 3 945 318 93 0 0 chr6 47260281 47260324 -102256713 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 945 372 245 12 12 chr6 47260328 47260493 -102256544 + (TATATG)n Simple_repeat Simple_repeat 1 165 0 3 945 233 265 0 0 chr6 47260494 47260543 -102256494 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 945 341 70 18 0 chr6 47260556 47260613 -102256424 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 3 945 1030 68 0 93 chr6 47260613 47260765 -102256272 - B1_Mus1 SINE Alu -9 139 1 3 945 1212 7 0 0 chr6 47261207 47261344 -102255693 + (GGGAGA)n Simple_repeat Simple_repeat 4 140 0 3 945 328 346 29 29 chr6 47261353 47261490 -102255547 - B1F1 SINE Alu -12 137 1 3 945 205 86 29 0 chr6 47261579 47261614 -102255423 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 3 945 3503 30 0 0 chr6 47263150 47263546 -102253491 - MTA_Mm LTR MaLR 0 396 1 3 945 795 202 86 16 chr6 47264030 47264216 -102252821 + B3 SINE B2 1 199 -17 3 945 208 300 0 0 chr6 47265200 47265270 -102251767 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 945 1880 261 111 54 chr6 47265603 47266196 -102250841 - L1MD2 LINE L1 -22 6337 5681 4 945 456 19 0 0 chr6 47266196 47266249 -102250788 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 945 1880 261 111 54 chr6 47266249 47266620 -102250417 - L1MD2 LINE L1 -679 5680 5320 4 945 250 250 130 0 chr6 47266622 47266722 -102250315 - MER2 DNA MER2_type -149 196 84 4 945 246 242 32 0 chr6 47267189 47267251 -102249786 + B4 SINE B4 4 67 -225 4 945 1090 68 0 46 chr6 47267498 47267651 -102249386 + B1_Mus1 SINE Alu 2 147 -1 4 945 234 329 120 62 chr6 47267820 47268206 -102248831 - Charlie25 DNA MER1_type -1630 894 486 4 945 1911 116 146 6 chr6 47268206 47268528 -102248509 + ORR1B2 LTR MaLR 1 367 0 4 945 234 329 120 62 chr6 47268528 47268751 -102248286 - Charlie25 DNA MER1_type -2039 485 251 4 945 386 244 133 44 chr6 47269181 47269361 -102247676 - Tigger7 DNA MER2_type -1 2490 2295 4 945 252 0 0 0 chr6 47269692 47269720 -102247317 + (A)n Simple_repeat Simple_repeat 1 28 0 4 945 909 133 12 0 chr6 47269969 47270134 -102246903 - URR1B DNA MER1_type 0 225 59 4 945 297 250 0 0 chr6 47270503 47270595 -102246442 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 945 25 31 0 0 chr6 47270622 47270654 -102246383 + AT_rich Low_complexity Low_complexity 1 32 0 4 945 759 228 0 7 chr6 47270660 47270806 -102246231 + RSINE1 SINE B4 3 147 -18 4 945 25 0 0 0 chr6 47270824 47270849 -102246188 + AT_rich Low_complexity Low_complexity 1 25 0 4 945 192 40 0 0 chr6 47271005 47271030 -102246007 + (T)n Simple_repeat Simple_repeat 1 25 0 4 945 406 137 105 0 chr6 47271302 47271397 -102245640 + ORR1B2 LTR MaLR 3 107 -260 4 945 378 143 48 0 chr6 47271395 47271458 -102245579 - ORR1B2 LTR MaLR -194 173 108 4 945 183 80 0 0 chr6 47271481 47271506 -102245531 + (CATATA)n Simple_repeat Simple_repeat 5 29 0 4 945 343 223 22 0 chr6 47271654 47271741 -102245296 - B3A SINE B2 -123 93 1 4 945 346 169 15 0 chr6 47272478 47272543 -102244494 - L2a LINE L2 0 3426 3361 4 945 404 254 96 9 chr6 47273000 47273115 -102243922 - B1_Mm SINE Alu -22 125 1 4 945 1236 270 41 47 chr6 47273302 47273667 -102243370 + ORR1D2 LTR MaLR 8 370 0 4 945 1260 111 16 37 chr6 47274925 47275113 -102241924 - B2_Mm2 SINE B2 -10 185 2 4 945 1138 183 30 156 chr6 47275127 47275399 -102241638 - RMER17C LTR ERVK -2 408 181 4 945 1220 69 11 0 chr6 47275399 47275574 -102241463 + (GGAGA)n Simple_repeat Simple_repeat 4 180 0 4 945 1138 183 30 156 chr6 47275574 47275768 -102241269 - RMER17C LTR ERVK -230 180 1 4 945 355 195 81 0 chr6 47275768 47275855 -102241182 + B3 SINE B2 117 210 -6 4 945 1040 147 0 0 chr6 47275884 47276034 -102241003 - B1_Mur4 SINE Alu 0 150 1 4 945 560 47 0 0 chr6 47276946 47277010 -102240027 + L1Md_F2 LINE L1 5522 5585 -298 4 945 8411 38 3 0 chr6 47277011 47277988 -102239049 + L1Md_F2 LINE L1 5587 6566 -16 4 945 1247 74 11 0 chr6 47277988 47278163 -102238874 + (GAGAA)n Simple_repeat Simple_repeat 4 180 0 4 945 360 236 37 59 chr6 47278541 47278676 -102238361 + MIRb SINE MIR 118 249 -19 4 945 742 233 6 6 chr6 47278714 47279056 -102237981 + GA-rich Low_complexity Low_complexity 1 342 0 4 945 1010 131 17 0 chr6 47279056 47279231 -102237806 + (GGAGAA)n Simple_repeat Simple_repeat 1 178 0 4 945 1109 124 0 94 chr6 47279696 47279870 -102237167 - B2_Mm1t SINE B2 0 193 35 4 945 7209 31 2 0 chr6 47279870 47280701 -102236336 - L1Md_F2 LINE L1 0 6582 5750 4 945 1109 124 0 94 chr6 47280701 47280739 -102236298 - B2_Mm1t SINE B2 -159 34 1 4 945 633 27 0 0 chr6 47281046 47281121 -102235916 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 4 945 1001 67 97 0 chr6 47281125 47281259 -102235778 - B1_Mus1 SINE Alu 0 148 2 4 945 198 103 0 0 chr6 47281318 47281347 -102235690 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 4 945 636 295 3 114 chr6 47281506 47281804 -102235233 - MT2A LTR ERVL -2 531 267 4 945 365 335 98 23 chr6 47282341 47282607 -102234430 - L1M5 LINE L1 -637 5603 5318 4 945 301 265 60 20 chr6 47282631 47282731 -102234306 - L1M5 LINE L1 -824 5322 5219 4 945 198 0 0 0 chr6 47283019 47283041 -102233996 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 4 945 1380 90 26 5 chr6 47284362 47284551 -102232486 - B2_Mm2 SINE B2 0 195 3 4 945 705 206 0 0 chr6 47285513 47285649 -102231388 + B1_Mur3 SINE Alu 9 144 -5 4 945 668 12 0 12 chr6 47285651 47285733 -102231304 + (GAGAA)n Simple_repeat Simple_repeat 5 85 0 4 945 1533 285 32 32 chr6 47285928 47286425 -102230612 + Lx8 LINE L1 6942 7438 -35 4 945 1060 230 0 5 chr6 47286440 47286654 -102230383 + B3 SINE B2 2 214 -2 4 945 409 281 64 23 chr6 47286958 47287129 -102229908 - MER63C DNA AcHobo -255 675 498 4 945 225 0 0 0 chr6 47287131 47287156 -102229881 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 945 542 215 158 12 chr6 47287158 47287323 -102229714 - ORR1E LTR MaLR -54 305 117 4 945 417 345 105 23 chr6 47287363 47287752 -102229285 - MER63C DNA AcHobo -505 425 5 4 945 455 73 15 0 chr6 47288240 47288308 -102228729 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 945 248 333 0 0 chr6 47288308 47288386 -102228651 - PB1D10 SINE Alu -39 78 1 4 945 715 225 64 27 chr6 47288931 47289118 -102227919 + B3A SINE B2 2 195 -3 4 945 1301 218 98 3 chr6 47289137 47289432 -102227605 - MT2A LTR ERVL -70 463 141 4 945 270 234 274 11 chr6 47289421 47289516 -102227521 + B3A SINE B2 63 182 -16 4 945 1149 102 16 21 chr6 47290171 47290361 -102226676 - B2_Mm2 SINE B2 0 195 7 4 945 2174 164 11 3 chr6 47290793 47291166 -102225871 + ORR1C1 LTR MaLR 3 378 0 4 945 454 192 50 0 chr6 47291446 47291545 -102225492 + B1F SINE Alu 43 146 -3 4 945 386 338 122 14 chr6 47291607 47291895 -102225142 + MER57C2 LTR ERV1 33 351 -83 4 945 288 288 69 46 chr6 47292303 47292434 -102224603 + MIRm SINE MIR 4 137 -139 4 945 897 283 52 8 chr6 47292642 47292891 -102224146 + B4 SINE B4 31 290 -2 4 945 414 308 20 40 chr6 47292908 47293060 -102223977 - Lx9 LINE L1 -234 7410 7262 4 945 590 228 70 57 chr6 47293675 47293833 -102223204 + B3A SINE B2 1 160 -38 4 945 405 102 0 0 chr6 47293861 47293920 -102223117 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 945 469 309 22 11 chr6 47294235 47294418 -102222619 + MER3 DNA MER1_type 1 185 -24 4 945 1283 193 115 3 chr6 47294535 47294821 -102222216 + MTD LTR MaLR 80 397 -22 4 945 246 371 21 43 chr6 47295096 47295282 -102221755 + L2 LINE L2 445 626 -2793 4 945 1023 280 17 44 chr6 47295834 47296196 -102220841 + L1MA4 LINE L1 5580 5931 -369 4 945 220 311 130 42 chr6 47296456 47296671 -102220366 + L2 LINE L2 733 966 -2453 4 945 2156 139 74 20 chr6 47296761 47297151 -102219886 - MTC LTR MaLR -1 420 10 4 945 5588 182 49 49 chr6 47297160 47297509 -102219528 - MTC-int LTR MaLR 0 1258 921 4 945 1486 68 5 0 chr6 47297509 47297700 -102219337 + B2_Mm1t SINE B2 2 193 0 4 945 5588 182 49 49 chr6 47297700 47298607 -102218430 - MTC-int LTR MaLR -338 920 2 4 945 2034 161 41 10 chr6 47298607 47299001 -102218036 - MTC LTR MaLR -1 420 15 4 945 355 301 8 31 chr6 47299275 47299402 -102217635 - ORR1E LTR MaLR -230 129 6 4 945 333 0 0 0 chr6 47299456 47299493 -102217544 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 945 320 316 43 9 chr6 47299737 47299852 -102217185 - MER44B DNA MER2_type -431 119 1 4 945 230 184 41 0 chr6 47299852 47299901 -102217136 + L1MCa LINE L1 568 618 -5890 4 945 399 238 62 87 chr6 47300123 47300284 -102216753 + L1MCb LINE L1 779 935 -5110 4 945 767 177 7 28 chr6 47300512 47300657 -102216380 + B1_Mus2 SINE Alu 5 146 -1 4 945 249 188 188 0 chr6 47300677 47300741 -102216296 + MIR SINE MIR 32 107 -155 4 945 717 263 15 35 chr6 47301017 47301196 -102215841 + B3A SINE B2 1 179 -19 4 945 3557 25 0 0 chr6 47301196 47301592 -102215445 - MTA_Mm LTR MaLR 0 396 1 4 945 717 263 15 35 chr6 47301592 47301609 -102215428 + B3A SINE B2 180 193 -5 4 945 381 218 9 65 chr6 47302406 47302514 -102214523 + PB1D9 SINE Alu 18 119 -1 4 945 467 288 28 22 chr6 47302523 47302704 -102214333 + B3A SINE B2 2 183 -15 4 945 1245 67 0 0 chr6 47302708 47302872 -102214165 + (GAAAA)n Simple_repeat Simple_repeat 2 165 0 4 945 357 302 76 59 chr6 47303215 47303451 -102213586 - LTR37B LTR ERV1 -190 278 39 4 945 552 247 8 19 chr6 47304432 47304582 -102212455 - MTEb LTR MaLR 0 379 234 4 945 768 276 93 14 chr6 47304620 47304899 -102212138 - RMER15 LTR ERVL -14 561 261 4 945 245 314 62 76 chr6 47305030 47305132 -102211905 - MTEb LTR MaLR -178 181 83 4 945 246 32 0 0 chr6 47305132 47305163 -102211874 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 945 245 314 62 76 chr6 47305163 47305205 -102211832 - MTEb LTR MaLR -277 82 39 4 945 255 159 0 0 chr6 47305218 47305262 -102211775 + Lx8 LINE L1 7428 7471 -2 4 945 1272 273 239 2 chr6 47305315 47305880 -102211157 - MTE-int LTR MaLR -46 1534 836 4 945 438 276 110 13 chr6 47305882 47306036 -102211001 - ORR1E LTR MaLR -188 171 3 4 945 5592 114 75 21 chr6 47306046 47306953 -102210084 - RMER17B LTR ERVK 0 958 3 4 945 323 232 21 14 chr6 47306977 47307117 -102209920 + GA-rich Low_complexity Low_complexity 1 141 0 4 945 739 173 22 0 chr6 47307167 47307306 -102209731 + B1_Mur1 SINE Alu 8 149 0 4 945 306 73 0 0 chr6 47309502 47309543 -102207494 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 945 984 216 64 137 chr6 47310422 47310830 -102206207 + MTE2b LTR MaLR 2 379 0 4 945 333 172 0 0 chr6 47310920 47310984 -102206053 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 945 598 259 79 42 chr6 47310984 47311181 -102205856 - B3A SINE B2 -13 203 1 4 945 3759 170 40 3 chr6 47311593 47312224 -102204813 + Lx5 LINE L1 6382 7035 -15 4 945 489 76 0 0 chr6 47312226 47312292 -102204745 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 4 945 881 232 46 0 chr6 47312500 47312737 -102204300 - L1MB2 LINE L1 -108 6063 5816 4 945 597 301 20 35 chr6 47312755 47312955 -102204082 - B3A SINE B2 0 198 2 4 945 493 194 39 46 chr6 47312957 47313087 -102203950 - L1MB2 LINE L1 -359 5824 5696 4 945 240 336 83 51 chr6 47313622 47313779 -102203258 - MLT1K LTR MaLR -298 297 136 4 945 1113 62 7 53 chr6 47315178 47315330 -102201707 - B1_Mus2 SINE Alu 0 147 3 4 946 860 264 77 8 chr6 47318457 47318705 -102198332 + B4 SINE B4 1 265 -27 5 946 1385 186 252 0 chr6 47318705 47319006 -102198031 - RLTR14 LTR ERV1 -1 381 5 5 946 243 0 0 0 chr6 47319078 47319105 -102197932 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 946 1140 102 0 22 chr6 47320179 47320359 -102196678 + URR1B DNA MER1_type 49 224 -1 5 946 187 31 30 30 chr6 47320723 47320756 -102196281 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 946 252 227 30 0 chr6 47320991 47321085 -102195952 + (CATATA)n Simple_repeat Simple_repeat 1 96 0 5 946 1184 131 21 0 chr6 47321088 47321279 -102195758 - MTC LTR MaLR -4 417 223 5 946 1053 200 99 103 chr6 47321311 47321721 -102195316 - MT2A LTR ERVL -54 547 1 5 946 899 302 35 15 chr6 47321728 47322071 -102194966 - L1MC1 LINE L1 -6 6327 5978 5 946 1615 243 102 29 chr6 47322109 47322621 -102194416 + MLT2B3 LTR ERVL 6 554 0 5 946 867 275 62 28 chr6 47322622 47322947 -102194090 - L1MC1 LINE L1 -413 5920 5585 5 946 23 33 0 0 chr6 47322964 47322994 -102194043 + AT_rich Low_complexity Low_complexity 1 30 0 5 946 328 292 138 2 chr6 47323259 47323389 -102193648 + B4A SINE B4 2 143 -81 5 946 302 318 78 34 chr6 47323554 47323759 -102193278 - MER34A1 LTR ERV1 -348 239 26 5 946 326 306 123 37 chr6 47324884 47325047 -102191990 + LTR33 LTR ERVL 160 336 -179 5 946 432 258 34 89 chr6 47325305 47325484 -102191553 - L1M3 LINE L1 -2444 3696 3528 5 946 429 299 47 13 chr6 47325534 47325683 -102191354 + B3 SINE B2 60 213 -3 5 946 279 295 126 75 chr6 47325907 47326056 -102190981 + RMER10A LTR ERVL 49 214 -228 5 946 2213 182 72 92 chr6 47326056 47326600 -102190437 + RMER16 LTR ERVK 1 533 0 5 946 279 295 126 75 chr6 47326600 47326753 -102190284 + RMER10A LTR ERVL 215 378 -64 5 946 186 43 0 0 chr6 47326753 47326776 -102190261 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 946 279 295 126 75 chr6 47326776 47326820 -102190217 + RMER10A LTR ERVL 379 414 -28 5 946 825 240 0 68 chr6 47327226 47327445 -102189592 + B3 SINE B2 3 206 -10 5 946 252 217 0 32 chr6 47327484 47327546 -102189491 + L1MC1 LINE L1 6274 6333 0 5 946 747 148 127 24 chr6 47328184 47328350 -102188687 - MTD LTR MaLR -16 403 221 5 946 315 145 0 0 chr6 47328352 47328421 -102188616 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 946 3250 211 57 35 chr6 47328436 47329266 -102187771 - RMER1B Other Other 0 1066 15 5 946 537 290 90 6 chr6 47329290 47329446 -102187591 - MTD LTR MaLR -231 188 20 5 946 934 34 0 0 chr6 47329455 47329574 -102187463 - B1_Mm SINE Alu -28 119 1 5 946 247 277 0 0 chr6 47329467 47329586 -102187451 - ORR1B1-int LTR MaLR -755 754 636 5 946 255 250 141 0 chr6 47330373 47330437 -102186600 - PB1D10 SINE Alu -44 73 1 5 946 342 0 0 0 chr6 47331328 47331366 -102185671 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 946 628 200 122 63 chr6 47331388 47331596 -102185441 + MTEa LTR MaLR 128 379 0 5 946 290 229 53 44 chr6 47331836 47331950 -102185087 + L1MA9 LINE L1 6155 6277 -35 5 946 232 317 49 0 chr6 47332659 47332741 -102184296 + L1MB5 LINE L1 5644 5729 -451 5 946 781 246 73 32 chr6 47332839 47333164 -102183873 - MTEa LTR MaLR -2 377 58 5 946 392 349 24 6 chr6 47333216 47333383 -102183654 + L1MB5 LINE L1 5956 6125 -49 5 946 2879 153 48 0 chr6 47333387 47333863 -102183174 + RLTR19 LTR ERVK 1 499 0 5 946 594 180 8 69 chr6 47333879 47334010 -102183027 + ID_B1 SINE B4 102 224 0 5 946 687 35 0 0 chr6 47334422 47334508 -102182529 + (CTTG)n Simple_repeat Simple_repeat 2 87 0 5 946 713 287 24 0 chr6 47334687 47334851 -102182186 + B3A SINE B2 1 168 -30 5 946 382 240 195 23 chr6 47334935 47335063 -102181974 + B3 SINE B2 66 215 -1 5 946 1287 265 6 15 chr6 47335076 47335409 -102181628 - MLT1B LTR MaLR -47 343 14 5 946 364 19 0 36 chr6 47335604 47335659 -102181378 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 5 946 315 0 0 0 chr6 47336031 47336066 -102180971 + (T)n Simple_repeat Simple_repeat 1 35 0 5 946 1280 27 0 0 chr6 47336066 47336212 -102180825 - B1_Mm SINE Alu 0 147 2 5 946 315 104 0 0 chr6 47336262 47336310 -102180727 + (GAGAA)n Simple_repeat Simple_repeat 4 51 0 5 946 989 124 6 0 chr6 47336310 47336471 -102180566 + (GAAA)n Simple_repeat Simple_repeat 4 165 0 5 946 395 191 0 0 chr6 47336551 47336619 -102180418 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 5 946 393 243 0 2 chr6 47336619 47336638 -102180399 + ID4_ SINE ID 7 93 -59 5 946 701 208 8 0 chr6 47336726 47336856 -102180181 - B1_Mur1 SINE Alu -2 147 17 5 946 442 284 20 41 chr6 47336856 47336873 -102180164 - ID_B1 SINE B4 -2 222 79 5 946 349 281 127 21 chr6 47337263 47337405 -102179632 - B4A SINE B4 -21 271 115 5 946 819 71 0 0 chr6 47337407 47337519 -102179518 + B1_Mus1 SINE Alu 37 148 0 5 946 549 0 0 0 chr6 47337519 47337580 -102179457 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 946 1193 233 99 60 chr6 47337617 47337982 -102179055 + MTEa LTR MaLR 1 379 0 5 946 265 284 156 0 chr6 47338041 47338150 -102178887 + ORR1E LTR MaLR 9 134 -225 5 946 891 53 0 0 chr6 47338182 47338295 -102178742 + (TCC)n Simple_repeat Simple_repeat 3 115 0 5 946 186 224 0 0 chr6 47338370 47338419 -102178618 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 946 620 281 7 0 chr6 47338507 47338660 -102178377 + Lx8 LINE L1 7062 7215 -258 5 946 252 358 93 4 chr6 47338736 47338983 -102178054 + L1MC LINE L1 5456 5724 -2158 5 946 33 43 0 0 chr6 47338988 47339035 -102178002 + AT_rich Low_complexity Low_complexity 1 47 0 5 946 239 268 105 47 chr6 47339211 47339297 -102177740 + B4A SINE B4 125 215 -77 5 946 564 283 46 11 chr6 47339297 47339472 -102177565 - Lx8 LINE L1 -214 7259 7079 5 946 364 251 138 48 chr6 47339482 47339670 -102177367 + Lx8 LINE L1 7264 7468 -5 5 946 263 214 88 10 chr6 47339673 47339767 -102177270 + B4 SINE B4 203 278 -14 5 946 306 50 0 0 chr6 47339770 47339810 -102177227 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 946 203 158 0 0 chr6 47340945 47340983 -102176054 + A-rich Low_complexity Low_complexity 2 39 0 5 946 348 214 170 47 chr6 47341845 47342001 -102175036 + MT2A LTR ERVL 6 149 -384 5 946 944 200 290 3 chr6 47341982 47342280 -102174757 + MT2A LTR ERVL 93 487 -46 5 946 369 0 0 0 chr6 47342280 47342321 -102174716 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 946 944 200 290 3 chr6 47342321 47342363 -102174674 + MT2A LTR ERVL 488 530 -3 5 946 224 200 0 0 chr6 47342658 47342703 -102174334 + B3 SINE B2 1 45 -171 5 946 1279 34 0 0 chr6 47342703 47342850 -102174187 + B1_Mm SINE Alu 1 147 0 5 946 980 175 45 0 chr6 47342877 47343054 -102173983 + B3 SINE B2 27 211 -5 5 946 229 256 90 0 chr6 47343455 47343533 -102173504 - MTE2b-int LTR MaLR -1493 87 3 5 946 796 204 86 0 chr6 47343534 47343720 -102173317 - MTE2b LTR MaLR 0 379 178 5 946 1236 41 0 20 chr6 47343873 47344023 -102173014 + B1_Mm SINE Alu 1 147 0 5 946 225 0 0 0 chr6 47345125 47345150 -102171887 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 5 946 647 278 20 25 chr6 47345163 47345366 -102171671 - B3 SINE B2 -12 204 3 5 946 250 287 57 35 chr6 47347160 47347301 -102169736 + L1ME2z LINE L1 6011 6154 -290 5 946 422 268 110 6 chr6 47347337 47347510 -102169527 + L1ME2z LINE L1 6240 6430 -14 5 946 918 210 48 10 chr6 47348206 47348413 -102168624 - B3 SINE B2 0 216 2 5 946 22 56 0 0 chr6 47348850 47348886 -102168151 + AT_rich Low_complexity Low_complexity 1 36 0 5 946 1043 264 0 0 chr6 47348912 47349128 -102167909 + B3 SINE B2 1 216 0 5 946 394 283 44 0 chr6 47349437 47349550 -102167487 + RSINE1 SINE B4 16 133 -32 5 946 37 23 0 0 chr6 47349602 47349646 -102167391 + AT_rich Low_complexity Low_complexity 1 44 0 5 946 2165 154 100 23 chr6 47350174 47350565 -102166472 - MTC LTR MaLR 0 421 1 5 946 804 250 42 19 chr6 47350975 47351191 -102165846 + ID_B1 SINE B4 4 224 0 5 946 261 0 0 0 chr6 47351327 47351356 -102165681 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 946 884 284 119 16 chr6 47351368 47351592 -102165445 - Lx8 LINE L1 0 7473 7230 5 946 207 0 0 0 chr6 47351592 47351615 -102165422 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 946 884 284 119 16 chr6 47351615 47351777 -102165260 - Lx8 LINE L1 -244 7229 7048 5 946 1520 206 47 28 chr6 47351777 47352271 -102164766 + RMER19B LTR ERVK 112 890 -12 5 946 227 341 114 34 chr6 47352379 47352555 -102164482 + MamGypLTR1a LTR Gypsy 542 731 -53 5 946 3911 164 15 32 chr6 47353060 47353802 -102163235 + RMER13B LTR ERVK 1 729 -179 5 946 296 217 17 0 chr6 47353805 47353865 -102163172 + RMER13B LTR ERVK 847 907 -1 5 946 1079 276 19 0 chr6 47355623 47355891 -102161146 - B4A SINE B4 -19 273 1 5 946 236 208 67 40 chr6 47356566 47356641 -102160396 + MIR SINE MIR 95 171 -91 5 946 295 237 67 76 chr6 47356662 47356767 -102160270 + PB1D10 SINE Alu 15 118 -2 5 946 1107 89 7 0 chr6 47356772 47356918 -102160119 + B1_Mus2 SINE Alu 1 147 0 5 946 22 0 0 0 chr6 47357076 47357098 -102159939 + AT_rich Low_complexity Low_complexity 1 22 0 5 946 1147 82 0 0 chr6 47357107 47357254 -102159783 - B1_Mus2 SINE Alu 0 147 1 5 946 1725 202 76 38 chr6 47357254 47357931 -102159106 - RMER19B LTR ERVK -17 885 1 5 946 212 354 49 39 chr6 47358013 47358216 -102158821 + L2c LINE L2 2814 3018 -401 5 946 182 222 22 0 chr6 47358292 47358337 -102158700 + L2c LINE L2 3102 3147 -240 5 946 553 241 69 146 chr6 47359007 47359084 -102157953 + B3 SINE B2 2 62 -154 5 946 1217 62 0 0 chr6 47359084 47359230 -102157807 - B1_Mm SINE Alu 0 147 2 5 946 553 241 69 146 chr6 47359230 47359385 -102157652 + B3 SINE B2 63 216 0 5 946 301 285 12 15 chr6 47359496 47359611 -102157426 - ID4 SINE ID -41 111 1 5 946 456 111 0 0 chr6 47359945 47360017 -102157020 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 946 234 328 97 22 chr6 47360249 47360383 -102156654 + MIR3 SINE MIR 41 184 -24 5 946 1674 27 0 0 chr6 47360481 47360668 -102156369 + B2_Mm1a SINE B2 1 187 -6 5 946 396 0 0 0 chr6 47361497 47361541 -102155496 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 946 375 41 0 0 chr6 47361541 47361590 -102155447 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 946 479 288 77 52 chr6 47361606 47361878 -102155159 - B4 SINE B4 -10 282 9 6 946 350 205 64 0 chr6 47362103 47362181 -102154856 + L1M2 LINE L1 5703 5785 -506 6 946 471 298 20 7 chr6 47362194 47362346 -102154691 + MER58A DNA MER1_type 47 200 -24 6 946 235 208 151 0 chr6 47362488 47362541 -102154496 + RMER1C Other Other 1136 1196 -146 6 946 394 229 63 110 chr6 47362506 47362697 -102154340 + Lx8 LINE L1 7290 7471 -2 6 946 492 182 0 20 chr6 47363367 47363468 -102153569 + B1_Mur4 SINE Alu 41 139 -11 6 946 238 272 0 112 chr6 47363468 47363483 -102153554 + ID_B1 SINE B4 121 223 -1 6 946 414 232 71 0 chr6 47364088 47364200 -102152837 - PB1D9 SINE Alu 0 120 1 6 946 411 338 52 31 chr6 47364292 47364521 -102152516 - MLT1K LTR MaLR -60 535 302 6 946 264 236 0 14 chr6 47364768 47364841 -102152196 - MER63D DNA AcHobo -851 210 139 6 946 431 88 29 0 chr6 47364841 47364909 -102152128 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 6 946 186 133 0 0 chr6 47364914 47364944 -102152093 + (TCC)n Simple_repeat Simple_repeat 1 30 0 6 946 649 289 61 24 chr6 47364944 47365157 -102151880 - ID_B1 SINE B4 -3 221 1 6 946 1650 148 21 85 chr6 47365264 47365604 -102151433 + ORR1B1 LTR MaLR 29 346 -48 6 946 527 155 0 67 chr6 47365853 47365957 -102151080 + ID_B1 SINE B4 128 224 0 6 946 275 197 14 14 chr6 47365959 47366031 -102151006 + A-rich Low_complexity Low_complexity 4 75 0 6 946 23 33 0 0 chr6 47366349 47366379 -102150658 + AT_rich Low_complexity Low_complexity 1 30 0 6 946 1116 83 0 7 chr6 47366479 47366625 -102150412 - B1_Mus1 SINE Alu 0 148 4 6 946 668 276 5 27 chr6 47366675 47366861 -102150176 + B3A SINE B2 1 182 -16 6 946 275 65 22 0 chr6 47366990 47367036 -102150001 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 6 946 273 119 0 0 chr6 47367167 47367209 -102149828 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 946 1198 76 29 6 chr6 47367635 47367806 -102149231 - B2_Mm2 SINE B2 -20 175 1 6 946 1141 82 0 0 chr6 47367908 47368054 -102148983 + B1_Mus1 SINE Alu 3 148 0 6 946 425 34 0 33 chr6 47368054 47368114 -102148923 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 6 946 962 158 13 93 chr6 47368399 47368636 -102148401 + L1_Mur2 LINE L1 889 1106 -5980 6 946 4468 159 55 41 chr6 47368647 47369525 -102147512 - RMER19B LTR ERVK -12 890 1 6 946 5191 140 7 79 chr6 47369525 47369952 -102147085 + L1_Mur2 LINE L1 1164 1568 -4309 6 946 1110 82 0 0 chr6 47369952 47370098 -102146939 + B1_Mus1 SINE Alu 3 148 0 6 946 5191 146 13 52 chr6 47370098 47370600 -102146437 + L1_Mur2 LINE L1 1569 2055 -3822 6 946 492 62 0 0 chr6 47370600 47370664 -102146373 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 946 5191 146 13 52 chr6 47370664 47370820 -102146217 + L1_Mur2 LINE L1 2056 2208 -3669 6 946 1457 59 312 0 chr6 47370816 47371037 -102146000 + MusHAL1 LINE L1 1742 2031 -681 6 946 309 336 43 92 chr6 47371687 47371851 -102145186 + RSINE1 SINE B4 4 159 -6 6 946 656 247 116 21 chr6 47371974 47371990 -102145047 - B3 SINE B2 -4 212 186 6 946 324 0 0 0 chr6 47371990 47372026 -102145011 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 946 656 247 116 21 chr6 47372026 47372199 -102144838 - B3 SINE B2 -31 185 5 6 946 730 224 103 10 chr6 47372332 47372526 -102144511 + B3 SINE B2 5 216 0 6 946 391 321 0 0 chr6 47373279 47373391 -102143646 - PB1D10 SINE Alu -1 116 5 6 946 263 351 56 111 chr6 47373929 47373945 -102143092 - MamRep38 DNA hAT -62 233 220 6 946 1215 244 101 9 chr6 47373945 47374272 -102142765 + ORR1E LTR MaLR 3 359 0 6 946 263 351 56 111 chr6 47374272 47374489 -102142548 - MamRep38 DNA hAT -76 219 13 6 946 445 278 21 0 chr6 47374727 47374824 -102142213 + RSINE1 SINE B4 48 146 -19 6 946 275 282 83 55 chr6 47375128 47375237 -102141800 - B1F2 SINE Alu -32 117 6 6 946 733 241 48 0 chr6 47375147 47375313 -102141724 - B4 SINE B4 -112 180 7 6 946 701 279 95 79 chr6 47375331 47375836 -102141201 - L1M3 LINE L1 -1780 4360 3848 6 946 2138 176 79 44 chr6 47375837 47376036 -102141001 - RLTR31_Mm LTR ERVK 0 561 355 6 946 6940 98 46 7 chr6 47376036 47377028 -102140009 - RLTR13D4 LTR ERVK -2 1031 1 6 946 2138 176 79 44 chr6 47377028 47377370 -102139667 - RLTR31_Mm LTR ERVK -207 354 1 6 946 394 238 12 12 chr6 47377409 47377494 -102139543 - RSINE1 SINE B4 0 165 81 6 946 3111 68 0 5 chr6 47377574 47377971 -102139066 - L1_Mus1 LINE L1 -12 6555 6161 6 946 1599 42 5 0 chr6 47377971 47378162 -102138875 + L1_Mus1 LINE L1 5983 6174 -393 6 946 360 290 113 55 chr6 47378205 47378462 -102138575 + L1M4 LINE L1 4828 5098 -1048 6 946 847 243 158 43 chr6 47378557 47378931 -102138106 - MTD LTR MaLR -1 418 2 6 946 496 270 0 0 chr6 47378933 47379044 -102137993 + L1MC1 LINE L1 5615 5725 -608 6 946 758 297 55 19 chr6 47379050 47379321 -102137716 + B4A SINE B4 2 282 -10 6 946 324 155 169 0 chr6 47379390 47379461 -102137576 - Lx8 LINE L1 -1 7472 7390 6 946 1221 246 108 12 chr6 47379477 47379885 -102137152 + L1MC1 LINE L1 5731 6177 -156 6 946 286 197 0 16 chr6 47380015 47380077 -102136960 - ORR1C2 LTR MaLR -323 61 1 6 946 292 154 0 19 chr6 47380080 47380133 -102136904 + PB1D7 SINE Alu 62 113 -7 6 946 336 274 10 59 chr6 47380387 47380488 -102136549 + PB1 SINE Alu 24 119 -8 6 946 335 188 72 0 chr6 47380523 47380592 -102136445 + L1M4 LINE L1 5197 5270 -876 6 946 370 219 219 0 chr6 47380611 47380716 -102136321 + B1_Mur1 SINE Alu 20 147 -2 6 946 1452 284 72 4 chr6 47380837 47381363 -102135674 - L1MB3 LINE L1 -34 6149 5588 6 946 1476 205 73 35 chr6 47383146 47383545 -102133492 - MTD LTR MaLR -3 416 3 6 946 1106 218 35 90 chr6 47383676 47384044 -102132993 + RLTR14 LTR ERV1 1 348 -34 6 946 8832 82 1 2 chr6 47384059 47386026 -102131011 + L1VL4 LINE L1 62 2024 -1535 6 946 6923 84 20 1 chr6 47386026 47386963 -102130074 + L1_Mus4 LINE L1 5682 6636 0 6 946 201 167 0 0 chr6 47386968 47387004 -102130033 + A-rich Low_complexity Low_complexity 1 36 0 6 946 471 351 39 45 chr6 47387042 47387376 -102129661 + RLTR14-int LTR ERV1 2 333 -4984 6 946 276 188 94 0 chr6 47387972 47388036 -102129001 + RLTR6-int LTR ERV1 4388 4457 -3321 6 946 476 246 17 0 chr6 47388069 47388187 -102128850 + ORR1C2 LTR MaLR 265 384 0 6 946 1180 79 82 22 chr6 47388843 47389025 -102128012 + B2_Mm1t SINE B2 1 193 0 6 946 237 255 224 62 chr6 47389065 47389275 -102127762 + L1MD LINE L1 4788 5031 -1115 6 946 4787 149 57 66 chr6 47389309 47390207 -102126830 + RMER19B LTR ERVK 1 890 -12 6 946 655 290 7 0 chr6 47390216 47390354 -102126683 + RSINE1 SINE B4 27 165 0 6 946 332 209 141 7 chr6 47390411 47390546 -102126491 + L1MD LINE L1 5055 5207 -939 6 946 285 98 0 0 chr6 47391418 47391459 -102125578 + (CAT)n Simple_repeat Simple_repeat 1 41 0 6 946 414 177 38 0 chr6 47391877 47391956 -102125081 + ID4 SINE ID 2 83 0 6 946 1364 238 40 109 chr6 47391972 47392377 -102124660 + MTE2b LTR MaLR 3 379 0 6 946 1344 211 42 24 chr6 47393080 47393367 -102123670 - ORR1D2 LTR MaLR -3 367 76 6 946 3005 19 98 0 chr6 47393502 47393861 -102123176 + MTA_Mm LTR MaLR 3 396 0 6 946 342 286 73 73 chr6 47394088 47394224 -102122813 - MIR SINE MIR -119 143 8 6 946 302 253 2 24 chr6 47394368 47394450 -102122587 + BC1_Mm scRNA scRNA 1 83 0 6 946 234 354 91 67 chr6 47394540 47394749 -102122288 + Arthur1 DNA Tip100 194 407 -3540 6 946 21 0 0 0 chr6 47395095 47395116 -102121921 + AT_rich Low_complexity Low_complexity 1 21 0 6 946 829 245 41 41 chr6 47395123 47395241 -102121796 - ID_B1 SINE B4 -2 222 104 6 946 2059 136 35 3 chr6 47395241 47395589 -102121448 + RLTR15 LTR ERVK 1 359 0 6 946 829 245 41 41 chr6 47395589 47395691 -102121346 - ID_B1 SINE B4 -121 103 2 6 946 267 295 81 120 chr6 47395772 47395926 -102121111 + MLT2C2 LTR ERVL 42 194 -220 6 946 315 68 0 0 chr6 47396037 47396081 -102120956 + RLTR15 LTR ERVK 299 342 -17 6 946 491 261 0 9 chr6 47396264 47396380 -102120657 - PB1D7 SINE Alu -5 115 1 6 946 216 305 144 21 chr6 47396726 47396823 -102120214 + PB1 SINE Alu 1 109 -18 6 946 526 228 50 0 chr6 47397219 47397320 -102119717 + B3A SINE B2 2 107 -91 6 946 280 341 55 16 chr6 47397220 47397348 -102119689 + RSINE1 SINE B4 8 140 -25 6 946 252 0 0 0 chr6 47397348 47397376 -102119661 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 946 1747 186 52 22 chr6 47397635 47397998 -102119039 + ORR1D1 LTR MaLR 1 374 0 6 946 3830 41 17 4 chr6 47398060 47398529 -102118508 + MT2C_Mm LTR ERVL 1 475 0 6 946 198 71 0 0 chr6 47398724 47398752 -102118285 + (GGA)n Simple_repeat Simple_repeat 3 30 0 6 946 462 183 479 0 chr6 47399140 47399282 -102117755 + B3 SINE B2 1 210 -6 6 946 2507 185 35 6 chr6 47399312 47399802 -102117235 + RLTR11A2 LTR ERVK 1 504 -23 6 946 4357 133 114 31 chr6 47399801 47400584 -102116453 + RMER19B LTR ERVK 57 902 0 6 946 386 305 106 61 chr6 47400558 47400760 -102116277 + B3A SINE B2 2 213 -3 6 946 30 0 0 0 chr6 47400780 47400810 -102116227 + AT_rich Low_complexity Low_complexity 1 30 0 6 946 350 259 108 9 chr6 47400823 47400927 -102116110 - PB1D9 SINE Alu -36 113 2 6 946 338 316 21 21 chr6 47400853 47400950 -102116087 - MT2B LTR ERVL -363 238 142 6 946 791 208 73 42 chr6 47400955 47401146 -102115891 + B3 SINE B2 3 199 -17 6 946 27 23 0 22 chr6 47401203 47401220 -102115817 + AT_rich Low_complexity Low_complexity 1 17 0 6 946 1195 55 0 0 chr6 47401220 47401366 -102115671 + B1_Mm SINE Alu 2 147 0 6 946 27 23 0 22 chr6 47401366 47401393 -102115644 + AT_rich Low_complexity Low_complexity 1 27 0 6 946 310 307 70 8 chr6 47401561 47401689 -102115348 - MIR SINE MIR -107 155 20 6 946 789 153 229 0 chr6 47402841 47403024 -102114013 - URR1B DNA MER1_type 0 225 1 6 946 180 0 0 0 chr6 47404292 47404312 -102112725 + (CGG)n Simple_repeat Simple_repeat 2 21 0 7 946 205 196 39 0 chr6 47404673 47404724 -102112313 + (CCCGG)n Simple_repeat Simple_repeat 1 53 0 7 946 1231 107 62 0 chr6 47408631 47408808 -102108229 - B2_Mm2 SINE B2 -6 189 2 7 946 713 196 110 80 chr6 47408835 47409035 -102108002 - B3 SINE B2 -10 206 1 7 946 255 196 0 152 chr6 47409492 47409558 -102107479 - tRNA-Ala-GCY_ tRNA tRNA -6 69 14 7 946 25 0 0 0 chr6 47409836 47409861 -102107176 + AT_rich Low_complexity Low_complexity 1 25 0 7 946 321 26 0 0 chr6 47409898 47409936 -102107101 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 946 330 280 159 43 chr6 47409941 47410079 -102106958 - RSINE1 SINE B4 -8 157 4 7 946 924 199 53 53 chr6 47411117 47411166 -102105871 - B3 SINE B2 0 216 176 7 946 1817 132 46 115 chr6 47411166 47411576 -102105461 + ORR1C2 LTR MaLR 1 382 -2 7 946 924 199 53 53 chr6 47411576 47411733 -102105304 - B3 SINE B2 -41 175 10 7 946 475 301 114 0 chr6 47411874 47411997 -102105040 - RSINE1 SINE B4 -27 138 2 7 946 263 197 180 0 chr6 47412727 47412788 -102104249 + PB1 SINE Alu 22 93 -34 7 946 245 247 157 0 chr6 47413330 47413419 -102103618 + PB1 SINE Alu 23 125 -2 7 946 273 89 0 0 chr6 47413673 47413718 -102103319 + (T)n Simple_repeat Simple_repeat 1 45 0 7 946 1121 244 28 8 chr6 47414328 47414576 -102102461 + MTEb LTR MaLR 127 379 0 7 946 26 30 0 0 chr6 47414654 47414687 -102102350 + AT_rich Low_complexity Low_complexity 1 33 0 7 946 220 299 0 29 chr6 47415107 47415176 -102101861 - ID4 SINE ID 0 83 17 7 946 324 237 75 48 chr6 47415208 47415424 -102101613 - L1MB1 LINE L1 -80 6211 5991 7 946 265 154 154 0 chr6 47416050 47416102 -102100935 - ID4_ SINE ID -10 73 14 7 946 1196 54 0 0 chr6 47416138 47416285 -102100752 - B1_Mus2 SINE Alu 0 147 1 7 946 688 257 7 7 chr6 47416609 47416750 -102100287 - RSINE1 SINE B4 -22 143 3 7 946 889 224 60 15 chr6 47417134 47417333 -102099704 - B3 SINE B2 -3 213 6 7 946 217 125 50 0 chr6 47417501 47417541 -102099496 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 7 946 654 187 0 9 chr6 47417567 47417680 -102099357 - PB1D9 SINE Alu -8 112 1 7 946 379 241 93 0 chr6 47417682 47417790 -102099247 - Charlie4a DNA MER1_type -368 140 23 7 946 334 269 13 13 chr6 47417786 47417865 -102099172 - RSINE1 SINE B4 -2 163 85 7 946 253 111 26 65 chr6 47417890 47417967 -102099070 + (CAAA)n Simple_repeat Simple_repeat 2 75 0 7 946 21 0 0 0 chr6 47418111 47418132 -102098905 + AT_rich Low_complexity Low_complexity 1 21 0 7 946 230 299 97 23 chr6 47418244 47418460 -102098577 - L1MC LINE L1 -2039 5843 5612 7 946 274 264 99 0 chr6 47418638 47418729 -102098308 - B3A SINE B2 -98 100 1 7 946 23 0 0 0 chr6 47419008 47419031 -102098006 + AT_rich Low_complexity Low_complexity 1 23 0 7 946 1223 41 0 0 chr6 47419032 47419178 -102097859 - B1_Mm SINE Alu 0 147 2 7 946 420 20 0 0 chr6 47419282 47419331 -102097706 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 946 2175 189 110 14 chr6 47419603 47420102 -102096935 - RLTR12B LTR ERVK -17 551 1 7 946 911 180 117 6 chr6 47420105 47420284 -102096753 - B3 SINE B2 -16 200 2 7 946 325 324 101 0 chr6 47420295 47420502 -102096535 - L1MB8 LINE L1 -4 6174 5947 7 946 23 0 0 0 chr6 47421652 47421675 -102095362 + AT_rich Low_complexity Low_complexity 1 23 0 7 946 2039 318 128 37 chr6 47421838 47423080 -102093957 + MTEa-int LTR MaLR 224 1578 -2 7 946 526 289 0 62 chr6 47423082 47423226 -102093811 + MTEa LTR MaLR 1 135 -244 7 946 329 262 90 36 chr6 47423230 47423341 -102093696 + MTEa LTR MaLR 263 379 0 7 946 1071 90 7 7 chr6 47423513 47423659 -102093378 - B1_Mm SINE Alu 0 147 2 7 946 1465 72 10 0 chr6 47423670 47423863 -102093174 - B2_Mm2 SINE B2 0 195 1 7 946 28159 77 29 26 chr6 47423883 47425782 -102091255 - L1_Mus2 LINE L1 0 6566 4651 7 946 1003 59 89 0 chr6 47425782 47425917 -102091120 - B1_Mus2 SINE Alu 0 147 1 7 946 28159 102 23 44 chr6 47425917 47426071 -102090966 - L1_Mus2 LINE L1 -1233 4650 4497 7 946 980 90 0 0 chr6 47426071 47426204 -102090833 + B1_Mus1 SINE Alu 16 148 0 7 946 28159 102 23 44 chr6 47426204 47429953 -102087084 - L1_Mus2 LINE L1 -1233 4496 726 7 946 407 277 13 7 chr6 47429954 47430103 -102086934 - L1_Mus2 LINE L1 -5804 812 663 7 946 266 278 0 11 chr6 47430129 47430220 -102086817 - L1VL2 LINE L1 -6150 185 96 7 946 484 300 94 52 chr6 47430377 47430644 -102086393 + B4A SINE B4 3 280 -12 7 946 1451 45 6 0 chr6 47433408 47433585 -102083452 + B2_Mm1t SINE B2 2 179 -14 7 946 265 366 59 15 chr6 47434032 47434168 -102082869 - MIRb SINE MIR -12 256 115 7 946 243 61 0 0 chr6 47435246 47435279 -102081758 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 946 512 243 26 26 chr6 47435289 47435403 -102081634 - RSINE1 SINE B4 -47 118 5 7 946 730 300 119 4 chr6 47435422 47435700 -102081337 + MER2 DNA MER2_type 5 314 -31 7 946 1150 196 141 56 chr6 47435716 47436057 -102080980 - ORR1D1 LTR MaLR -4 370 1 7 946 313 291 57 41 chr6 47436187 47436309 -102080728 + MER58B DNA MER1_type 210 333 -8 7 946 387 267 117 33 chr6 47436387 47436507 -102080530 - MTEa LTR MaLR -5 374 245 7 946 432 230 35 0 chr6 47436488 47436575 -102080462 + ID_B1 SINE B4 122 211 -13 7 946 26 0 0 0 chr6 47436575 47436601 -102080436 + AT_rich Low_complexity Low_complexity 1 26 0 7 946 705 279 70 35 chr6 47436668 47436924 -102080113 - MTEa LTR MaLR -114 265 1 7 946 635 236 129 10 chr6 47437039 47437232 -102079805 - B3 SINE B2 0 216 1 7 946 455 285 23 23 chr6 47437289 47437422 -102079615 + ID_B1 SINE B4 85 217 -7 7 946 924 178 0 0 chr6 47437447 47437627 -102079410 + GA-rich Low_complexity Low_complexity 1 180 0 7 946 24 100 0 0 chr6 47437752 47437832 -102079205 + AT_rich Low_complexity Low_complexity 1 80 0 7 946 237 276 103 0 chr6 47437889 47437947 -102079090 + B3A SINE B2 87 150 -48 7 946 198 118 0 0 chr6 47437951 47437985 -102079052 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 946 589 252 65 0 chr6 47438030 47438169 -102078868 + RSINE1 SINE B4 3 150 -15 7 946 331 247 0 105 chr6 47438207 47438302 -102078735 + MT2B LTR ERVL 156 240 -361 7 946 607 159 133 16 chr6 47438224 47438352 -102078685 + B1_Mur3 SINE Alu 7 149 0 7 946 766 227 13 7 chr6 47438375 47438530 -102078507 + B3A SINE B2 1 156 -42 7 946 435 291 92 17 chr6 47438716 47438835 -102078202 - B3A SINE B2 -70 128 1 7 946 630 216 132 39 chr6 47438837 47439271 -102077766 - L1MB7 LINE L1 -124 6055 5567 7 946 443 178 61 19 chr6 47439525 47439623 -102077414 - PB1D10 SINE Alu -1 119 21 7 946 307 252 160 28 chr6 47439672 47439778 -102077259 - RSINE1 SINE B4 -2 163 44 7 946 396 39 0 0 chr6 47440707 47440759 -102076278 - B1_Mur4 SINE Alu -5 145 94 7 946 414 0 0 0 chr6 47440834 47440880 -102076157 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 946 477 259 162 7 chr6 47441051 47441199 -102075838 + B3 SINE B2 16 186 -30 7 946 360 169 36 72 chr6 47441419 47441502 -102075535 - ID4 SINE ID -2 81 2 7 946 325 250 22 22 chr6 47443180 47443270 -102073767 + PB1D10 SINE Alu 27 116 -1 7 946 5485 81 88 17 chr6 47443415 47444930 -102072107 - L1VL2 LINE L1 -1793 1822 164 7 946 589 158 175 0 chr6 47445462 47445576 -102071461 - B1_Mus2 SINE Alu -5 142 9 7 946 441 206 67 29 chr6 47446687 47446792 -102070245 + ID_B1 SINE B4 98 206 -18 7 946 378 219 35 10 chr6 47446761 47446879 -102070158 + B1F SINE Alu 24 140 -9 7 946 325 339 72 18 chr6 47447735 47447846 -102069191 + MER5A DNA MER1_type 4 120 -69 7 946 512 311 138 15 chr6 47447851 47448047 -102068990 + ID_B1 SINE B4 3 222 -2 7 118 686 270 185 4 chr6 47448056 47448301 -102068736 + B4 SINE B4 2 290 -2 7 947 381 205 254 8 chr6 47448627 47448745 -102068292 - B1_Mm SINE Alu 0 147 1 7 947 243 212 0 184 chr6 47449071 47449169 -102067868 + MT2B LTR ERVL 160 239 -362 7 947 481 239 8 41 chr6 47449081 47449203 -102067834 + PB1D9 SINE Alu 1 118 -2 7 947 270 73 0 0 chr6 47449466 47449507 -102067530 + (A)n Simple_repeat Simple_repeat 1 41 0 7 947 350 305 69 0 chr6 47449959 47450090 -102066947 + B1_Mm SINE Alu 2 141 -6 7 947 219 156 385 15 chr6 47450474 47450539 -102066498 + B4A SINE B4 2 90 -202 7 947 251 247 67 45 chr6 47450555 47450644 -102066393 + B4A SINE B4 187 277 -15 7 947 916 288 37 26 chr6 47451320 47451591 -102065446 + B4 SINE B4 15 288 -4 7 947 21 36 0 0 chr6 47451820 47451848 -102065189 + AT_rich Low_complexity Low_complexity 1 28 0 7 947 335 368 22 22 chr6 47453141 47453280 -102063757 - MER58A DNA MER1_type 0 224 86 7 947 351 0 0 0 chr6 47453349 47453388 -102063649 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 947 26 0 0 0 chr6 47453388 47453414 -102063623 + AT_rich Low_complexity Low_complexity 1 26 0 7 947 1150 88 0 0 chr6 47453416 47453564 -102063473 - B1_Mus1 SINE Alu 0 148 1 7 947 436 327 64 25 chr6 47454078 47454235 -102062802 - RSINE1 SINE B4 0 165 3 7 947 1104 76 7 20 chr6 47454711 47454859 -102062178 + B1_Mus2 SINE Alu 1 146 -1 7 947 318 265 104 15 chr6 47454892 47455026 -102062011 + MIR SINE MIR 103 248 -14 7 947 22 0 0 0 chr6 47455502 47455524 -102061513 + AT_rich Low_complexity Low_complexity 1 22 0 7 947 490 256 158 22 chr6 47455527 47455711 -102061326 + B3 SINE B2 2 210 -6 7 947 189 121 0 0 chr6 47455924 47455957 -102061080 + (T)n Simple_repeat Simple_repeat 1 33 0 7 947 1193 62 0 0 chr6 47455957 47456102 -102060935 - B1_Mm SINE Alu 0 147 3 7 947 4481 57 52 2 chr6 47456313 47456891 -102060146 + L1_Mus1 LINE L1 5959 6565 -2 8 947 1187 55 0 7 chr6 47459235 47459383 -102057654 - B1_Mm SINE Alu 0 147 1 8 947 295 257 96 29 chr6 47459457 47459561 -102057476 - PB1D9 SINE Alu -9 111 1 8 947 662 261 27 38 chr6 47459603 47459786 -102057251 - B3 SINE B2 -27 189 9 8 947 213 132 0 26 chr6 47459788 47459827 -102057210 + T-rich Low_complexity Low_complexity 3 40 0 8 947 457 296 61 0 chr6 47459874 47459989 -102057048 - B3A SINE B2 -68 130 9 8 947 261 0 0 0 chr6 47460143 47460172 -102056865 + (T)n Simple_repeat Simple_repeat 1 29 0 8 947 210 225 0 0 chr6 47460351 47460391 -102056646 + PB1D10 SINE Alu 52 91 -26 8 947 396 209 11 65 chr6 47460358 47460450 -102056587 + B1F SINE Alu 62 148 -1 8 947 23 54 0 0 chr6 47460545 47460582 -102056455 + AT_rich Low_complexity Low_complexity 1 37 0 8 947 647 221 38 8 chr6 47460801 47460933 -102056104 + B1_Mur2 SINE Alu 1 136 -13 8 947 243 362 0 0 chr6 47461744 47461813 -102055224 - B4A SINE B4 0 292 224 8 947 605 262 27 41 chr6 47462404 47462551 -102054486 + ID_B1 SINE B4 80 224 0 8 947 314 275 62 0 chr6 47462556 47462636 -102054401 + RSINE1 SINE B4 60 144 -21 8 947 347 280 168 0 chr6 47462811 47462918 -102054119 - MER99 DNA hAT? -2 829 705 8 947 372 22 0 0 chr6 47463144 47463189 -102053848 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 947 297 331 60 8 chr6 47463224 47463358 -102053679 - MER99 DNA hAT? -405 426 286 8 947 856 248 10 15 chr6 47465743 47465948 -102051089 + B3 SINE B2 2 205 -11 8 947 1014 174 65 20 chr6 47466692 47466892 -102050145 - B3 SINE B2 -5 211 3 8 947 316 289 121 17 chr6 47467473 47467589 -102049448 - MLT1A LTR MaLR -11 363 236 8 947 315 0 0 0 chr6 47469047 47469082 -102047955 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 947 199 229 0 40 chr6 47469947 47469997 -102047040 + MIR SINE MIR 87 134 -74 8 947 774 186 21 0 chr6 47471473 47471613 -102045424 - B1_Mur4 SINE Alu -1 149 7 8 947 418 296 42 36 chr6 47471477 47471642 -102045395 - ID_B1 SINE B4 -4 220 55 8 947 459 0 0 0 chr6 47471672 47471723 -102045314 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 947 390 313 57 62 chr6 47471736 47471930 -102045107 - B4A SINE B4 -2 290 98 8 947 642 294 27 54 chr6 47472003 47472226 -102044811 - ID_B1 SINE B4 -7 217 1 8 947 235 298 18 0 chr6 47472736 47472793 -102044244 + tRNA-Gly-GGY tRNA tRNA 7 64 -10 8 947 571 264 98 49 chr6 47474130 47474333 -102042704 - B3 SINE B2 -3 213 1 8 947 331 238 57 47 chr6 47476915 47477021 -102040016 - PB1D9 SINE Alu -9 111 5 8 947 484 222 104 23 chr6 47477384 47477525 -102039512 + ORR1D2 LTR MaLR 205 370 0 8 947 448 176 16 89 chr6 47477541 47477553 -102039484 + ID_B1 SINE B4 121 165 -59 8 947 534 178 33 0 chr6 47477553 47477643 -102039394 + B1_Mur1 SINE Alu 49 141 -8 8 947 448 176 16 89 chr6 47477643 47477656 -102039381 + ID_B1 SINE B4 166 224 0 8 947 237 75 125 0 chr6 47478466 47478506 -102038531 + B3A SINE B2 5 49 -149 8 947 1207 35 0 0 chr6 47479197 47479338 -102037699 + B1_Mus1 SINE Alu 2 142 -6 8 947 483 274 10 0 chr6 47479674 47479776 -102037261 + RSINE1 SINE B4 7 109 -56 8 947 218 268 34 68 chr6 47479926 47480014 -102037023 - MIR3 SINE MIR -9 199 115 8 947 556 242 31 0 chr6 47483145 47483273 -102033764 - RSINE1 SINE B4 -31 134 3 8 947 582 278 70 86 chr6 47484501 47484783 -102032254 - B4A SINE B4 -1 291 27 8 947 655 191 119 0 chr6 47485163 47485289 -102031748 - B1_Mur4 SINE Alu -8 142 2 8 947 738 231 118 5 chr6 47485835 47486022 -102031015 + B3 SINE B2 1 208 -8 8 947 217 288 121 0 chr6 47486193 47486259 -102030778 - RSINE1 SINE B4 -19 146 73 8 947 7842 39 21 0 chr6 47487230 47488188 -102028849 + L1Md_F3 LINE L1 5607 6584 0 8 947 6985 49 1 1 chr6 47488362 47489259 -102027778 + L1_Mm LINE L1 4690 5586 -297 8 947 8530 27 0 5 chr6 47489259 47490260 -102026777 + L1Md_F2 LINE L1 5587 6582 0 8 947 854 257 26 48 chr6 47490421 47490650 -102026387 + ID_B1 SINE B4 1 224 0 8 947 829 139 236 11 chr6 47491181 47491363 -102025674 + URR1A DNA MER1_type 3 225 -1 8 947 1705 67 0 16 chr6 47492806 47493049 -102023988 + L1_Mus1 LINE L1 5713 5951 -616 8 947 2454 55 3 0 chr6 47493049 47493358 -102023679 + L1_Mus1 LINE L1 6258 6567 0 8 947 507 311 49 63 chr6 47494648 47494933 -102022104 + B4 SINE B4 1 281 -11 8 947 385 224 102 0 chr6 47495480 47495578 -102021459 + B3A SINE B2 5 112 -86 8 947 28 61 0 0 chr6 47496166 47496215 -102020822 + AT_rich Low_complexity Low_complexity 1 49 0 8 947 243 0 0 0 chr6 47496634 47496661 -102020376 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 8 947 402 298 11 6 chr6 47497861 47497969 -102019068 - B1F1 SINE Alu -11 106 1 8 947 1105 44 15 0 chr6 47498151 47498287 -102018750 + B1_Mus2 SINE Alu 1 138 -9 8 947 778 186 7 52 chr6 47498615 47498630 -102018407 - B1_Mus2 SINE Alu 0 147 136 8 947 270 0 0 0 chr6 47498630 47498660 -102018377 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 8 947 778 186 7 52 chr6 47498660 47498797 -102018240 - B1_Mus2 SINE Alu -12 135 2 8 947 222 233 322 0 chr6 47499300 47499390 -102017647 + RSINE1 SINE B4 28 146 -19 8 947 628 296 59 21 chr6 47499572 47499810 -102017227 + B4A SINE B4 2 248 -44 8 947 315 245 39 39 chr6 47499897 47499999 -102017038 + Lx8 LINE L1 6205 6306 -1167 8 947 1812 271 51 47 chr6 47500000 47500645 -102016392 + Lx8 LINE L1 6308 6955 -518 1 947 572 149 128 26 chr6 47500650 47500767 -102016270 + B1_Mur3 SINE Alu 2 130 -19 2 947 343 272 0 0 chr6 47500925 47501006 -102016031 + ID4_ SINE ID 2 82 -1 3 947 372 221 0 181 chr6 47501051 47501189 -102015848 + PB1D10 SINE Alu 5 117 0 4 947 183 80 0 0 chr6 47502277 47502302 -102014735 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 947 497 273 56 7 chr6 47502768 47502912 -102014125 - RSINE1 SINE B4 -11 154 4 6 947 415 302 70 16 chr6 47502980 47503108 -102013929 - B1F SINE Alu -10 139 5 7 947 596 212 44 0 chr6 47503002 47503115 -102013922 - ID_B1 SINE B4 -28 196 79 8 947 239 294 74 91 chr6 47503479 47503655 -102013382 + MIRb SINE MIR 16 188 -80 9 947 638 291 7 13 chr6 47503911 47504061 -102012976 - RSINE1 SINE B4 -13 152 4 1 947 219 114 0 0 chr6 47504171 47504206 -102012831 + (CAT)n Simple_repeat Simple_repeat 2 36 0 1 947 776 276 6 15 chr6 47504951 47505164 -102011873 + ORR1B2 LTR MaLR 1 229 -155 1 947 317 279 48 24 chr6 47505425 47505550 -102011487 + RLTR11A2 LTR ERVK 390 517 -10 1 947 706 172 8 0 chr6 47505592 47505714 -102011323 + ORR1C1 LTR MaLR 162 284 -94 1 947 1242 34 0 7 chr6 47505753 47505901 -102011136 - B1_Mm SINE Alu 0 147 1 1 947 357 180 25 0 chr6 47505909 47505991 -102011046 + ORR1C1 LTR MaLR 265 384 -10 1 947 609 144 0 0 chr6 47506151 47506255 -102010782 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 947 545 267 80 7 chr6 47506319 47506470 -102010567 + RSINE1 SINE B4 4 165 0 1 947 522 0 0 0 chr6 47506471 47506529 -102010508 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 947 232 267 143 0 chr6 47506736 47506841 -102010196 - MER104 DNA Tc2 -61 120 1 1 947 1335 212 77 34 chr6 47506948 47507300 -102009737 + ORR1D2 LTR MaLR 3 369 -1 2 947 415 241 8 163 chr6 47508697 47508826 -102008211 - PB1D10 SINE Alu -1 116 8 2 947 311 269 123 43 chr6 47508934 47509097 -102007940 - MIR SINE MIR -5 257 82 2 947 308 227 67 11 chr6 47509502 47509591 -102007446 - Kanga1d DNA Tc2 -21 588 495 2 947 293 354 72 25 chr6 47510294 47510529 -102006508 - MIRb SINE MIR -7 261 16 2 947 234 246 14 58 chr6 47511241 47511310 -102005727 + Tigger12 DNA MER2_type 791 856 -1103 2 947 261 261 71 20 chr6 47511956 47512057 -102004980 - MIR SINE MIR -21 255 136 2 947 573 80 0 0 chr6 47512955 47513043 -102003994 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 947 605 250 0 16 chr6 47513072 47513198 -102003839 - B1F1 SINE Alu -2 147 24 2 947 1015 271 70 40 chr6 47513220 47513696 -102003341 + MT2A LTR ERVL 1 565 -36 2 947 405 0 0 0 chr6 47513696 47513741 -102003296 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 3 947 1015 252 76 26 chr6 47513741 47513761 -102003276 + MT2A LTR ERVL 566 593 -8 2 947 3476 140 56 39 chr6 47513762 47514203 -102002834 + MERVL_2A-int LTR ERVL 1 446 -5315 2 947 1038 157 141 0 chr6 47514203 47514401 -102002636 + URR1A DNA MER1_type 1 226 0 3 947 3476 140 56 39 chr6 47514401 47514658 -102002379 + MERVL_2A-int LTR ERVL 447 711 -5050 2 947 20735 162 39 9 chr6 47514654 47518432 -101998605 + MERVL_2A-int LTR ERVL 1324 5213 -548 2 947 480 177 0 9 chr6 47518459 47518556 -101998481 + MERVL_2A-int LTR ERVL 5256 5407 -354 2 947 523 200 0 18 chr6 47518556 47518668 -101998369 + RMER1B Other Other 590 699 -367 3 947 2333 174 29 146 chr6 47518668 47519292 -101997745 + RMER19C LTR ERVK 1 551 -60 3 947 1398 150 0 0 chr6 47519311 47519531 -101997506 + RMER1B Other Other 690 909 -157 3 947 447 250 0 0 chr6 47519543 47519647 -101997390 + RMER1A Other Other 914 1017 -13 3 947 737 138 51 112 chr6 47519663 47519718 -101997319 + MERVL_2A-int LTR ERVL 5392 5446 -315 2 947 1506 22 28 0 chr6 47519718 47519897 -101997140 + B2_Mm1a SINE B2 2 185 -8 3 947 737 138 51 112 chr6 47519897 47520037 -101997000 + MERVL_2A-int LTR ERVL 5447 5575 -186 2 947 360 190 106 57 chr6 47520037 47520160 -101996877 + ORR1A3-int LTR MaLR 511 639 -1324 3 947 332 161 0 0 chr6 47520160 47520216 -101996821 + MERVL_2A-int LTR ERVL 5706 5761 0 2 947 1342 237 165 78 chr6 47520216 47520706 -101996331 + MT2A LTR ERVL 1 533 0 2 947 317 311 57 0 chr6 47520934 47521040 -101995997 + PB1D9 SINE Alu 1 112 -8 3 947 1188 187 19 23 chr6 47521781 47521995 -101995042 + B3 SINE B2 1 213 -3 3 947 456 19 0 0 chr6 47522016 47522069 -101994968 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 947 720 111 0 0 chr6 47522069 47522177 -101994860 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 4 947 732 270 96 0 chr6 47522195 47522373 -101994664 + B3 SINE B2 1 195 -21 4 947 225 65 0 0 chr6 47522649 47522680 -101994357 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 947 29 28 0 0 chr6 47524045 47524081 -101992956 + AT_rich Low_complexity Low_complexity 1 36 0 4 947 654 221 58 14 chr6 47524086 47524224 -101992813 + B1_Mur1 SINE Alu 4 147 -2 4 947 760 259 47 132 chr6 47524603 47524778 -101992259 + B3A SINE B2 1 168 -30 4 947 324 0 0 0 chr6 47524778 47524814 -101992223 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 947 458 259 47 132 chr6 47524814 47524851 -101992186 + B2_Mm2 SINE B2 163 195 0 4 947 836 294 11 0 chr6 47525174 47525361 -101991676 + B3 SINE B2 25 213 -3 4 947 634 281 25 32 chr6 47527138 47527296 -101989741 - RSINE1 SINE B4 -6 159 3 4 947 289 239 0 15 chr6 47527299 47527367 -101989670 - ID_B1 SINE B4 -71 153 87 4 947 774 90 27 0 chr6 47527859 47527970 -101989067 - B1_Mus1 SINE Alu 0 148 35 5 947 992 192 13 82 chr6 47528212 47528444 -101988593 + B3 SINE B2 1 216 0 5 947 303 331 32 32 chr6 47528513 47528669 -101988368 + MER2B DNA MER2_type 10 165 -171 5 947 744 225 89 61 chr6 47528776 47529022 -101988015 + MER2 DNA MER2_type 88 340 -5 5 947 804 191 14 0 chr6 47529115 47529256 -101987781 + B1_Mus1 SINE Alu 6 148 0 5 947 351 0 0 0 chr6 47529276 47529315 -101987722 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 947 333 100 0 0 chr6 47530196 47530246 -101986791 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 947 310 282 12 12 chr6 47530350 47530436 -101986601 + GA-rich Low_complexity Low_complexity 4 89 0 5 947 2100 99 84 0 chr6 47530796 47531119 -101985918 - MTB LTR MaLR -50 350 1 5 947 485 229 16 63 chr6 47531267 47531393 -101985644 - PB1D7 SINE Alu 0 120 1 5 947 405 293 114 105 chr6 47531393 47531477 -101985560 - ID_B1 SINE B4 -1 223 12 6 947 218 271 21 0 chr6 47531515 47531563 -101985474 + RSINE1 SINE B4 6 54 -111 6 947 555 223 42 8 chr6 47531550 47531690 -101985347 + MTD LTR MaLR 39 189 -232 6 947 230 183 78 62 chr6 47531717 47531781 -101985256 + RLTR40 LTR ERVK 120 184 -633 6 947 234 268 42 0 chr6 47531781 47531852 -101985185 + L1MB1 LINE L1 5861 5934 -234 6 947 2974 217 89 11 chr6 47531859 47532901 -101984136 + MMAR1 DNA Mariner 1 1124 -162 6 947 3317 149 79 118 chr6 47532901 47533747 -101983290 + RLTR40 LTR ERVK 1 813 -4 6 947 584 183 26 9 chr6 47533809 47533925 -101983112 + PB1D9 SINE Alu 3 120 0 6 947 377 129 14 0 chr6 47533925 47533995 -101983042 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 947 575 145 72 8 chr6 47533995 47534120 -101982917 + MMAR1 DNA Mariner 1149 1281 -5 6 947 1603 32 21 0 chr6 47534166 47534355 -101982682 + B2_Mm1a SINE B2 1 193 0 6 947 301 192 0 27 chr6 47534384 47534459 -101982578 + L1MB2 LINE L1 6051 6123 -48 7 947 712 240 41 62 chr6 47534468 47534663 -101982374 + B3A SINE B2 3 193 -5 7 947 815 149 55 28 chr6 47534692 47534837 -101982200 + B1_Mur3 SINE Alu 1 149 0 7 947 296 271 44 30 chr6 47534859 47534962 -101982075 + B1F2 SINE Alu 17 121 -26 7 947 28 29 0 0 chr6 47535750 47535785 -101981252 + AT_rich Low_complexity Low_complexity 1 35 0 7 947 256 268 47 35 chr6 47536392 47536477 -101980560 + ID_B1 SINE B4 134 219 -5 7 947 327 263 26 0 chr6 47536402 47536478 -101980559 + B1F1 SINE Alu 68 145 -4 7 947 849 220 28 11 chr6 47536477 47536656 -101980381 - B3 SINE B2 -33 183 2 7 947 620 281 96 24 chr6 47536660 47537077 -101979960 + L1ME1 LINE L1 5468 5903 -261 7 947 258 292 52 0 chr6 47537152 47537248 -101979789 + L1ME1 LINE L1 6035 6135 -29 7 947 1685 26 0 0 chr6 47537294 47537487 -101979550 - B2_Mm1a SINE B2 0 193 1 7 947 582 273 19 26 chr6 47537632 47537786 -101979251 + RSINE1 SINE B4 1 153 -12 8 947 197 224 17 0 chr6 47537786 47537844 -101979193 + GA-rich Low_complexity Low_complexity 1 59 0 8 947 21 36 0 0 chr6 47538096 47538124 -101978913 + AT_rich Low_complexity Low_complexity 1 28 0 8 947 470 231 177 24 chr6 47538361 47538485 -101978552 + ID_B1 SINE B4 82 224 0 8 947 604 226 7 70 chr6 47538489 47538632 -101978405 + B1_Mus2 SINE Alu 2 135 -12 8 947 785 48 19 0 chr6 47538632 47538737 -101978300 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 8 947 581 285 38 6 chr6 47538747 47538906 -101978131 + Lx8 LINE L1 7164 7327 -146 8 947 303 313 30 0 chr6 47538915 47539006 -101978031 + B1_Mur1 SINE Alu 48 148 -1 8 947 2154 209 7 49 chr6 47539081 47539629 -101977408 + Lx9 LINE L1 6959 7483 -161 8 947 22 35 0 0 chr6 47539722 47539751 -101977286 + AT_rich Low_complexity Low_complexity 1 29 0 8 947 939 220 5 40 chr6 47539756 47539979 -101977058 + B3 SINE B2 2 216 0 9 947 383 230 71 43 chr6 47540003 47540144 -101976893 - L1MB3 LINE L1 -288 5895 5751 9 947 532 323 16 36 chr6 47540452 47540645 -101976392 + B3A SINE B2 2 190 -8 9 947 575 228 30 75 chr6 47540712 47540845 -101976192 - RSINE1 SINE B4 -35 130 4 9 947 25 51 0 0 chr6 47540845 47540884 -101976153 + AT_rich Low_complexity Low_complexity 1 39 0 9 947 870 99 122 0 chr6 47540960 47541086 -101975951 + B1_Mm SINE Alu 1 142 -5 9 947 180 0 0 0 chr6 47541086 47541106 -101975931 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 947 355 339 17 8 chr6 47541295 47541414 -101975623 + PB1 SINE Alu 1 120 -7 9 947 303 307 18 0 chr6 47541428 47541542 -101975495 + PB1D10 SINE Alu 1 116 -1 9 947 338 42 0 0 chr6 47541547 47541595 -101975442 + L1_Mus2 LINE L1 6519 6566 0 9 947 669 110 0 0 chr6 47541600 47541700 -101975337 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 1 947 493 263 73 41 chr6 47541701 47541824 -101975213 + B1F SINE Alu 1 127 -22 1 947 21 0 0 0 chr6 47544618 47544639 -101972398 + GC_rich Low_complexity Low_complexity 1 21 0 1 947 198 0 0 0 chr6 47544812 47544834 -101972203 + (CCG)n Simple_repeat Simple_repeat 2 23 0 1 947 201 74 0 0 chr6 47544940 47544967 -101972070 + (CCG)n Simple_repeat Simple_repeat 1 27 0 1 947 213 39 0 0 chr6 47546154 47546180 -101970857 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1 947 677 179 19 25 chr6 47546321 47546481 -101970556 + MT2A LTR ERVL 351 509 -24 1 947 259 309 25 142 chr6 47546400 47546604 -101970433 - MT2B LTR ERVL -73 528 349 1 947 440 184 0 125 chr6 47546634 47546746 -101970291 - MT2A LTR ERVL -430 103 6 1 947 22 35 0 0 chr6 47546767 47546796 -101970241 + AT_rich Low_complexity Low_complexity 1 29 0 1 947 540 180 142 45 chr6 47548726 47548860 -101968177 + B1_Mur2 SINE Alu 3 149 0 1 947 650 250 7 27 chr6 47548891 47549039 -101967998 + B1_Mur1 SINE Alu 2 146 -3 1 947 399 348 45 0 chr6 47549046 47549201 -101967836 + RSINE1 SINE B4 3 164 -1 1 947 396 276 153 0 chr6 47549238 47549336 -101967701 + ID_B1 SINE B4 99 211 -13 1 947 277 278 183 61 chr6 47549336 47549352 -101967685 + B1F2 SINE Alu 18 145 -4 1 947 31 0 0 0 chr6 47549422 47549453 -101967584 + AT_rich Low_complexity Low_complexity 1 31 0 1 947 218 338 24 61 chr6 47549878 47549960 -101967077 + ID4 SINE ID 1 79 -73 1 947 862 150 0 8 chr6 47550120 47550254 -101966783 + B1_Mur4 SINE Alu 5 137 -13 1 947 21 0 0 0 chr6 47550285 47550306 -101966731 + AT_rich Low_complexity Low_complexity 1 21 0 1 947 980 230 196 54 chr6 47550454 47550790 -101966247 + MTA_Mm LTR MaLR 5 388 -8 1 947 180 0 0 0 chr6 47551067 47551087 -101965950 + (A)n Simple_repeat Simple_repeat 1 20 0 1 947 1085 68 0 40 chr6 47551398 47551550 -101965487 + B1_Mus1 SINE Alu 3 148 0 1 947 365 222 79 20 chr6 47551772 47551873 -101965164 + B1F SINE Alu 36 142 -7 1 947 396 252 299 0 chr6 47551931 47552058 -101964979 + RSINE1 SINE B4 1 165 0 1 947 1537 157 47 108 chr6 47552064 47552091 -101964946 + ORR1C2 LTR MaLR 3 22 -362 1 947 778 81 171 0 chr6 47552091 47552214 -101964823 + B1_Mus2 SINE Alu 2 145 -2 1 947 1537 157 47 108 chr6 47552214 47552593 -101964444 + ORR1C2 LTR MaLR 23 384 0 1 947 747 293 78 27 chr6 47552774 47553030 -101964007 + B4A SINE B4 4 272 -20 1 947 907 180 0 0 chr6 47553103 47553253 -101963784 - B1_Mur4 SINE Alu 0 150 1 1 947 818 60 42 25 chr6 47553515 47553634 -101963403 + B1_Mus1 SINE Alu 28 148 0 1 947 1523 139 238 0 chr6 47553719 47554021 -101963016 - ORR1D1 LTR MaLR 0 374 1 1 947 267 345 109 54 chr6 47554258 47554497 -101962540 - MLT1J LTR MaLR -158 354 103 1 947 413 193 224 48 chr6 47554580 47554705 -101962332 + B1_Mur1 SINE Alu 1 147 -2 1 947 3827 29 11 0 chr6 47554732 47555183 -101961854 + L1Md_F3 LINE L1 6129 6584 0 1 947 223 135 0 0 chr6 47555202 47555239 -101961798 + B3A SINE B2 1 37 -161 1 947 751 277 51 32 chr6 47555314 47555627 -101961410 - RLTR11A LTR ERVK -217 310 7 1 947 4615 186 45 56 chr6 47555634 47556558 -101960479 - MYSERV6-int LTR ERVK -1 8958 8037 1 947 1145 76 14 0 chr6 47556558 47556702 -101960335 - B1_Mus2 SINE Alu -1 146 1 1 947 4615 188 41 46 chr6 47556702 47556986 -101960051 - MYSERV6-int LTR ERVK -923 8036 7813 1 947 1189 81 6 0 chr6 47556986 47557158 -101959879 + B2_Mm2 SINE B2 1 173 -22 1 947 180 0 0 0 chr6 47557197 47557217 -101959820 + (TTA)n Simple_repeat Simple_repeat 1 20 0 1 947 849 296 97 88 chr6 47557223 47557917 -101959120 - MYSERV16_I-int LTR ERVK -1279 1047 348 1 947 667 277 35 125 chr6 47558189 47558502 -101958535 - RLTR11A2 LTR ERVK -167 286 2 1 947 306 229 33 0 chr6 47558503 47558564 -101958473 + B3 SINE B2 30 92 -124 1 947 1134 82 0 7 chr6 47558575 47558723 -101958314 + B1_Mus2 SINE Alu 1 147 0 1 947 257 201 199 0 chr6 47558958 47559055 -101957982 - MTEa LTR MaLR -2 377 259 1 947 317 292 11 0 chr6 47559050 47559139 -101957898 - MTEa LTR MaLR -289 90 1 1 947 21 0 0 0 chr6 47559410 47559431 -101957606 + AT_rich Low_complexity Low_complexity 1 21 0 1 947 2975 46 0 0 chr6 47559473 47559819 -101957218 + ORR1A0 LTR MaLR 1 346 0 1 947 21 57 0 0 chr6 47559841 47559876 -101957161 + AT_rich Low_complexity Low_complexity 1 35 0 1 947 8548 136 40 8 chr6 47559881 47560124 -101956913 + Lx2 LINE L1 4383 4629 -1248 1 947 219 36 0 0 chr6 47560124 47560152 -101956885 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 947 8548 136 40 8 chr6 47560152 47561320 -101955717 + Lx2 LINE L1 4630 5839 -38 1 947 5257 34 2 0 chr6 47561312 47562016 -101955021 - L1Md_F2 LINE L1 -616 5966 5262 1 947 1294 77 0 16 chr6 47562016 47562202 -101954835 + L1Md_F2 LINE L1 6400 6582 0 1 947 2573 133 53 19 chr6 47562300 47562781 -101954256 + Lx2 LINE L1 5810 6310 -687 1 947 2683 119 51 11 chr6 47562776 47563211 -101953826 + Lx2 LINE L1 6546 6997 0 1 947 661 228 29 0 chr6 47564101 47564237 -101952800 + B1_Mur2 SINE Alu 8 147 -2 1 947 189 373 18 9 chr6 47564573 47564684 -101952353 + L2a LINE L2 3309 3420 -6 1 947 431 287 65 95 chr6 47565369 47565600 -101951437 + RMER2 LTR ERV1 344 567 0 1 947 405 164 0 0 chr6 47565871 47565944 -101951093 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 947 287 164 16 0 chr6 47566096 47566157 -101950880 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1 947 497 233 33 16 chr6 47566321 47566443 -101950594 + ID_B1 SINE B4 92 215 -9 1 947 238 233 0 0 chr6 47566587 47566630 -101950407 + B1_Mur4 SINE Alu 2 44 -106 1 947 242 257 0 14 chr6 47566722 47566793 -101950244 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 947 222 348 97 11 chr6 47566826 47566919 -101950118 - RSINE1 SINE B4 -63 102 2 1 947 440 300 48 43 chr6 47567505 47567693 -101949344 + B3 SINE B2 27 215 -1 1 947 916 256 19 19 chr6 47567704 47567911 -101949126 - B3 SINE B2 -5 211 5 1 947 21 71 0 0 chr6 47567917 47567959 -101949078 + AT_rich Low_complexity Low_complexity 1 42 0 1 947 787 214 0 7 chr6 47568311 47568457 -101948580 - B1_Mur2 SINE Alu -2 147 3 1 947 646 236 0 28 chr6 47568716 47568860 -101948177 + B1F2 SINE Alu 10 149 0 1 947 296 188 31 0 chr6 47568929 47568993 -101948044 - MLT1C LTR MaLR -30 437 372 1 947 562 221 24 8 chr6 47568991 47569114 -101947923 - URR1A DNA MER1_type -101 125 1 1 947 324 297 42 0 chr6 47569114 47569218 -101947819 + MER20 DNA MER1_type 111 219 0 1 947 1306 122 43 70 chr6 47569237 47569377 -101947660 + URR1B DNA MER1_type 2 144 -81 1 947 737 175 43 21 chr6 47569377 47569517 -101947520 - B1_Mur3 SINE Alu -5 144 2 1 947 1306 122 43 70 chr6 47569517 47569606 -101947431 + URR1B DNA MER1_type 145 225 0 1 947 448 285 63 35 chr6 47569814 47569956 -101947081 + B1_Mur1 SINE Alu 4 149 0 1 947 227 311 65 9 chr6 47570039 47570146 -101946891 + PB1D10 SINE Alu 2 114 -3 1 947 227 192 0 0 chr6 47570173 47570225 -101946812 + A-rich Low_complexity Low_complexity 1 52 0 1 947 1191 57 0 0 chr6 47570228 47570368 -101946669 + B1_Mus1 SINE Alu 3 142 -6 1 947 495 0 0 0 chr6 47570370 47570425 -101946612 + (TAAAA)n Simple_repeat Simple_repeat 4 58 0 1 947 1108 84 0 0 chr6 47570435 47570577 -101946460 + B1_Mus1 SINE Alu 1 142 -6 1 947 1191 94 0 0 chr6 47570583 47570763 -101946274 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 947 301 289 123 19 chr6 47570770 47570786 -101946251 + B4 SINE B4 70 213 -79 1 947 511 212 0 7 chr6 47570786 47570898 -101946139 + B1_Mur4 SINE Alu 1 107 -13 1 947 237 65 0 0 chr6 47570898 47570929 -101946108 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1 947 301 289 123 19 chr6 47570935 47570955 -101946082 + B4 SINE B4 214 239 -53 1 947 227 295 72 21 chr6 47572300 47572397 -101944640 + B4A SINE B4 89 190 -102 1 947 423 228 97 19 chr6 47572310 47572413 -101944624 + PB1 SINE Alu 15 125 -2 1 947 3561 58 0 13 chr6 47572422 47572875 -101944162 + L1Md_F2 LINE L1 6136 6582 0 1 947 483 18 0 0 chr6 47572988 47573044 -101943993 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 947 1142 45 0 0 chr6 47573119 47573253 -101943784 + B1_Mus2 SINE Alu 1 134 -13 1 947 603 0 0 0 chr6 47573253 47573320 -101943717 + (GAAA)n Simple_repeat Simple_repeat 1 67 0 1 947 227 31 0 30 chr6 47573980 47574013 -101943024 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 947 482 255 18 73 chr6 47574028 47574193 -101942844 - RSINE1 SINE B4 -7 158 3 1 947 419 306 14 14 chr6 47574370 47574510 -101942527 + B1F1 SINE Alu 1 139 -10 1 947 180 0 0 0 chr6 47574510 47574530 -101942507 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 947 537 226 26 68 chr6 47574622 47574797 -101942240 + MLT1B LTR MaLR 36 205 -185 1 947 279 0 0 0 chr6 47574797 47574828 -101942209 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 947 405 0 0 0 chr6 47574828 47574872 -101942165 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 947 537 255 81 58 chr6 47574872 47574917 -101942120 + MLT1B LTR MaLR 206 267 -200 1 947 569 72 0 12 chr6 47574993 47575077 -101941960 + URR1B DNA MER1_type 143 225 0 1 947 434 255 78 10 chr6 47575229 47575332 -101941705 - PB1D9 SINE Alu -8 112 3 1 947 276 288 24 24 chr6 47575596 47575678 -101941359 - ID4_ SINE ID 0 83 2 1 947 1105 52 0 0 chr6 47575731 47575865 -101941172 + B1_Mus2 SINE Alu 2 135 -12 1 947 279 0 0 0 chr6 47575866 47575897 -101941140 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 947 374 147 15 0 chr6 47575960 47576028 -101941009 - B1_Mur1 SINE Alu -7 142 74 1 947 261 57 0 0 chr6 47576373 47576408 -101940629 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 947 1511 64 0 0 chr6 47576966 47577153 -101939884 - B2_Mm1a SINE B2 -5 188 2 1 947 555 284 61 8 chr6 47578110 47578304 -101938733 + B3A SINE B2 1 202 -14 1 947 236 114 45 0 chr6 47578332 47578376 -101938661 + B1_Mur1 SINE Alu 70 115 -34 1 118 629 284 64 8 chr6 47578949 47579183 -101937854 + MLT1C LTR MaLR 220 466 -1 2 948 917 152 0 14 chr6 47579399 47579546 -101937491 - B1_Mus1 SINE Alu 0 148 4 2 948 1347 88 11 16 chr6 47579571 47579756 -101937281 - B2_Mm1t SINE B2 -8 185 2 2 948 523 154 0 11 chr6 47579774 47579866 -101937171 - B1_Mur2 SINE Alu 0 149 59 2 948 30 27 0 0 chr6 47579874 47579911 -101937126 + AT_rich Low_complexity Low_complexity 1 37 0 2 948 363 88 0 17 chr6 47579933 47579991 -101937046 - RLTR12A LTR ERVK -71 497 441 2 948 1637 37 5 0 chr6 47580048 47580239 -101936798 - B2_Mm1t SINE B2 0 193 2 2 948 486 0 0 0 chr6 47580397 47580451 -101936586 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 948 183 241 0 36 chr6 47580500 47580556 -101936481 + L2a LINE L2 3275 3328 -98 2 948 738 145 193 0 chr6 47580605 47580750 -101936287 + RLTR24 LTR ERV1 354 526 -3 2 948 450 0 0 0 chr6 47580770 47580820 -101936217 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 948 201 170 0 60 chr6 47580982 47581082 -101935955 + (TCTCTG)n Simple_repeat Simple_repeat 2 95 0 2 948 545 188 102 8 chr6 47581084 47581202 -101935835 - B1_Mur1 SINE Alu -20 129 1 2 948 1209 48 0 7 chr6 47581550 47581696 -101935341 - B1_Mm SINE Alu 0 147 3 2 948 2370 210 64 50 chr6 47581743 47582623 -101934414 - RMER19B LTR ERVK -12 890 1 2 948 1023 193 23 33 chr6 47583144 47583161 -101933876 + B3 SINE B2 1 17 -199 2 948 3313 51 0 5 chr6 47583161 47583559 -101933478 + MTA_Mm LTR MaLR 1 396 0 2 948 1023 193 23 33 chr6 47583559 47583755 -101933282 + B3 SINE B2 18 212 -4 2 948 510 209 91 28 chr6 47583844 47583987 -101933050 + ORR1D2 LTR MaLR 199 350 -20 2 948 526 345 9 124 chr6 47583994 47584111 -101932926 + ORR1D2-int LTR MaLR 6 88 -1704 2 948 1134 75 0 0 chr6 47584111 47584258 -101932779 - B1_Mus2 SINE Alu 0 147 1 2 948 1095 204 4 21 chr6 47584258 47584494 -101932543 + ORR1D2-int LTR MaLR 91 322 -1048 2 948 947 240 24 0 chr6 47584500 47584708 -101932329 + B3 SINE B2 1 213 -3 2 948 198 103 0 0 chr6 47584769 47584798 -101932239 + (GTATG)n Simple_repeat Simple_repeat 4 32 0 2 948 245 167 0 0 chr6 47584823 47584865 -101932172 - PB1D9 SINE Alu -20 100 59 2 948 346 290 82 43 chr6 47584992 47585176 -101931861 + B3A SINE B2 2 192 -6 2 948 656 270 63 0 chr6 47585322 47585496 -101931541 - B3 SINE B2 -4 212 28 2 948 627 51 0 0 chr6 47585499 47585578 -101931459 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 2 948 698 53 0 0 chr6 47585578 47585672 -101931365 - B1_Mus2 SINE Alu -1 146 53 2 948 596 279 56 25 chr6 47585689 47585851 -101931186 - B3A SINE B2 -30 168 2 2 948 416 147 27 0 chr6 47587141 47587216 -101929821 + HY5 scRNA scRNA 1 77 -7 2 948 230 250 0 55 chr6 47587571 47587626 -101929411 - ID_B1 SINE B4 -7 217 166 2 948 429 302 67 0 chr6 47587830 47587949 -101929088 - B3A SINE B2 -45 153 27 2 948 561 195 8 56 chr6 47587973 47588098 -101928939 - PB1D9 SINE Alu 0 120 2 2 948 558 193 0 27 chr6 47588111 47588223 -101928814 - B1_Mur2 SINE Alu -2 147 39 2 948 3122 20 0 0 chr6 47588296 47588642 -101928395 + ORR1A0 LTR MaLR 1 346 0 2 948 14429 54 2 1 chr6 47588642 47590431 -101926606 + ORR1A0-int LTR MaLR 1 1792 0 2 948 3032 20 0 44 chr6 47590431 47590793 -101926244 + ORR1A0 LTR MaLR 1 346 0 2 948 380 280 112 0 chr6 47590802 47590927 -101926110 - RSINE1 SINE B4 0 165 27 2 948 22 0 0 0 chr6 47590953 47590975 -101926062 + AT_rich Low_complexity Low_complexity 1 22 0 2 948 752 226 106 16 chr6 47590995 47591184 -101925853 + B3 SINE B2 9 214 -2 2 948 466 301 7 14 chr6 47591250 47591395 -101925642 - ID_B1 SINE B4 -2 222 79 2 948 369 258 11 11 chr6 47591751 47591845 -101925192 - B1_Mus2 SINE Alu -7 140 47 2 948 198 103 0 0 chr6 47591867 47591896 -101925141 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 2 948 727 122 203 0 chr6 47591898 47592021 -101925016 - B1_Mus1 SINE Alu 0 148 1 2 948 360 0 0 0 chr6 47592353 47592393 -101924644 + (CATA)n Simple_repeat Simple_repeat 4 43 0 2 948 490 294 115 121 chr6 47592476 47592929 -101924108 + MLT1F2 LTR MaLR 38 487 -73 2 948 225 0 0 0 chr6 47593035 47593060 -101923977 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 948 1975 181 8 13 chr6 47593554 47593937 -101923100 - RLTR17 LTR ERVK -99 593 233 2 948 481 215 190 0 chr6 47594006 47594127 -101922910 - B3 SINE B2 -2 214 71 2 948 657 171 18 0 chr6 47594176 47594287 -101922750 - PB1D9 SINE Alu -7 113 1 2 948 366 233 0 0 chr6 47594320 47594393 -101922644 - B4 SINE B4 -218 74 2 2 948 282 259 159 9 chr6 47594394 47594507 -101922530 - MIR SINE MIR -113 149 20 2 948 195 184 0 0 chr6 47594803 47594841 -101922196 + A-rich Low_complexity Low_complexity 1 38 0 2 948 294 29 0 0 chr6 47595153 47595188 -101921849 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 948 447 254 143 0 chr6 47595350 47595476 -101921561 - RSINE1 SINE B4 -7 158 15 2 948 305 47 0 23 chr6 47595506 47595550 -101921487 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 948 366 270 16 57 chr6 47595585 47595707 -101921330 - RSINE1 SINE B4 -45 120 4 2 948 554 293 0 0 chr6 47596242 47596365 -101920672 - RSINE1 SINE B4 -2 163 41 2 948 2952 223 20 76 chr6 47596532 47597055 -101919982 + RMER12B LTR ERVK 383 842 -562 2 948 264 30 0 0 chr6 47597055 47597088 -101919949 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2 948 2952 237 15 62 chr6 47597088 47597602 -101919435 + RMER12B LTR ERVK 843 1246 -158 2 948 750 23 0 0 chr6 47597631 47597719 -101919318 + (TC)n Simple_repeat Simple_repeat 2 89 0 2 948 435 52 0 0 chr6 47597719 47597776 -101919261 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 948 318 183 0 0 chr6 47597960 47598020 -101919017 + RMER12B LTR ERVK 1345 1404 0 2 948 1066 257 13 13 chr6 47598147 47598451 -101918586 - RLTR18B LTR ERVK -1 511 208 2 948 774 229 9 35 chr6 47598462 47598693 -101918344 + URR1B DNA MER1_type 1 225 0 2 948 603 259 30 91 chr6 47598806 47598912 -101918125 - RLTR18 LTR ERVK -337 279 184 2 948 414 0 0 0 chr6 47598912 47598958 -101918079 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 948 603 259 30 91 chr6 47598958 47599148 -101917889 - RLTR18 LTR ERVK -433 183 1 2 948 477 131 0 0 chr6 47599185 47599269 -101917768 + (TCC)n Simple_repeat Simple_repeat 3 86 0 2 948 266 67 22 0 chr6 47599339 47599384 -101917653 + (CACCAT)n Simple_repeat Simple_repeat 3 48 0 2 948 447 100 0 0 chr6 47599384 47599454 -101917583 + (CAG)n Simple_repeat Simple_repeat 1 70 0 2 948 270 0 0 0 chr6 47599888 47599918 -101917119 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 2 948 540 68 0 0 chr6 47599922 47599995 -101917042 + (GGAA)n Simple_repeat Simple_repeat 1 73 0 2 948 262 271 0 0 chr6 47599995 47600065 -101916972 + (CAAG)n Simple_repeat Simple_repeat 1 70 0 2 948 390 21 0 0 chr6 47600313 47600360 -101916677 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 948 267 31 0 0 chr6 47600478 47600510 -101916527 + (TAGGG)n Simple_repeat Simple_repeat 3 34 0 2 948 785 32 0 0 chr6 47600760 47600854 -101916183 - 4.5SRNA scRNA scRNA 0 94 1 2 948 567 132 0 0 chr6 47601044 47601135 -101915902 + (CAA)n Simple_repeat Simple_repeat 2 92 0 2 948 3718 240 45 40 chr6 47601823 47602092 -101914945 + RMER12B LTR ERVK 9 256 -1148 2 948 396 0 0 0 chr6 47602092 47602136 -101914901 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 2 948 3718 240 45 40 chr6 47602136 47602652 -101914385 + RMER12B LTR ERVK 257 765 -639 2 948 231 36 0 0 chr6 47602652 47602680 -101914357 + (CGAAA)n Simple_repeat Simple_repeat 3 30 0 2 948 3718 240 45 40 chr6 47602680 47603045 -101913992 + RMER12B LTR ERVK 766 1149 -255 2 948 321 26 0 0 chr6 47603045 47603083 -101913954 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 948 3718 242 32 82 chr6 47603083 47603207 -101913830 + RMER12B LTR ERVK 1081 1221 -183 2 948 351 0 0 0 chr6 47603207 47603246 -101913791 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 948 331 244 43 86 chr6 47603246 47603307 -101913730 + RMER12B LTR ERVK 1203 1253 -151 2 948 416 35 17 0 chr6 47603307 47603365 -101913672 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 948 331 244 43 86 chr6 47603365 47603393 -101913644 + RMER12B LTR ERVK 1254 1286 -118 2 948 288 262 8 99 chr6 47603400 47603566 -101913471 + RMER12B LTR ERVK 1291 1425 -147 2 948 1819 57 31 39 chr6 47603811 47604067 -101912970 - L1_Mus2 LINE L1 -4 6562 6309 2 948 492 32 0 0 chr6 47604205 47604267 -101912770 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 2 948 399 41 0 0 chr6 47604590 47604639 -101912398 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 948 422 120 13 0 chr6 47604676 47604751 -101912286 + (GGA)n Simple_repeat Simple_repeat 2 77 0 2 948 758 43 0 0 chr6 47604999 47605093 -101911944 - 4.5SRNA scRNA scRNA 0 94 1 2 948 240 35 0 0 chr6 47605289 47605318 -101911719 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 2 948 729 23 0 0 chr6 47605505 47605592 -101911445 + (TCC)n Simple_repeat Simple_repeat 1 87 0 2 948 3770 238 45 40 chr6 47606070 47606339 -101910698 + RMER12B LTR ERVK 9 256 -1148 2 948 396 0 0 0 chr6 47606339 47606383 -101910654 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 2 948 3770 238 45 40 chr6 47606383 47606899 -101910138 + RMER12B LTR ERVK 257 765 -639 2 948 345 47 0 0 chr6 47606899 47606942 -101910095 + (CGAAA)n Simple_repeat Simple_repeat 3 45 0 2 948 3770 238 45 40 chr6 47606942 47607307 -101909730 + RMER12B LTR ERVK 766 1149 -255 2 948 285 29 0 0 chr6 47607307 47607341 -101909696 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 948 3770 241 32 82 chr6 47607341 47607465 -101909572 + RMER12B LTR ERVK 1081 1221 -183 2 948 423 0 0 0 chr6 47607465 47607512 -101909525 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 2 948 331 244 43 86 chr6 47607512 47607573 -101909464 + RMER12B LTR ERVK 1203 1253 -151 2 948 614 25 12 0 chr6 47607573 47607653 -101909384 + (TG)n Simple_repeat Simple_repeat 1 81 0 2 948 331 244 43 86 chr6 47607653 47607681 -101909356 + RMER12B LTR ERVK 1254 1286 -118 2 948 288 262 8 99 chr6 47607688 47607854 -101909183 + RMER12B LTR ERVK 1291 1425 -147 2 948 1819 57 31 39 chr6 47608099 47608355 -101908682 - L1_Mus2 LINE L1 -4 6562 6309 2 948 603 39 0 0 chr6 47608493 47608571 -101908466 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 2 948 417 39 0 0 chr6 47608895 47608946 -101908091 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 948 677 88 10 0 chr6 47608983 47609085 -101907952 + (GGA)n Simple_repeat Simple_repeat 2 104 0 2 948 758 43 0 0 chr6 47609320 47609414 -101907623 - 4.5SRNA scRNA scRNA 0 94 1 2 948 240 35 0 0 chr6 47609610 47609639 -101907398 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 2 948 594 28 0 0 chr6 47609826 47609898 -101907139 + (TCC)n Simple_repeat Simple_repeat 1 72 0 2 948 3770 238 45 40 chr6 47610376 47610645 -101906392 + RMER12B LTR ERVK 9 256 -1148 3 948 396 0 0 0 chr6 47610645 47610689 -101906348 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 3 948 3770 238 45 40 chr6 47610689 47611205 -101905832 + RMER12B LTR ERVK 257 765 -639 3 948 345 47 0 0 chr6 47611205 47611248 -101905789 + (CGAAA)n Simple_repeat Simple_repeat 3 45 0 3 948 3770 238 45 40 chr6 47611248 47611613 -101905424 + RMER12B LTR ERVK 766 1149 -255 3 948 285 29 0 0 chr6 47611613 47611647 -101905390 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 948 3770 245 148 48 chr6 47611647 47611771 -101905266 + RMER12B LTR ERVK 1081 1231 -173 3 948 459 0 0 0 chr6 47611771 47611822 -101905215 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 3 948 380 305 45 68 chr6 47611822 47611883 -101905154 + RMER12B LTR ERVK 1203 1253 -151 3 948 632 24 12 0 chr6 47611883 47611965 -101905072 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 948 380 260 180 85 chr6 47611965 47612166 -101904871 + RMER12B LTR ERVK 1254 1434 -138 3 948 241 333 0 0 chr6 47612296 47612377 -101904660 - RLTR18B LTR ERVK -3 509 429 3 948 1860 60 31 39 chr6 47612408 47612667 -101904370 - L1_Mus2 LINE L1 -1 6565 6309 3 948 564 29 0 0 chr6 47612805 47612875 -101904162 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 3 948 471 35 0 0 chr6 47613198 47613255 -101903782 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 948 860 67 8 0 chr6 47613292 47613412 -101903625 + (GGA)n Simple_repeat Simple_repeat 2 122 0 3 948 783 43 0 0 chr6 47613660 47613754 -101903283 - 4.5SRNA scRNA scRNA 0 94 1 3 948 240 35 0 0 chr6 47613950 47613979 -101903058 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 3 948 783 21 0 0 chr6 47614166 47614259 -101902778 + (TCC)n Simple_repeat Simple_repeat 1 93 0 3 948 4487 243 39 38 chr6 47614737 47615006 -101902031 + RMER12B LTR ERVK 9 256 -1148 3 948 396 0 0 0 chr6 47615006 47615050 -101901987 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 3 948 4487 243 39 38 chr6 47615050 47615566 -101901471 + RMER12B LTR ERVK 257 765 -639 3 948 345 47 0 0 chr6 47615566 47615609 -101901428 + (CGAAA)n Simple_repeat Simple_repeat 3 45 0 3 948 4487 243 39 38 chr6 47615609 47615974 -101901063 + RMER12B LTR ERVK 766 1149 -255 3 948 285 29 0 0 chr6 47615974 47616008 -101901029 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 948 4487 247 145 48 chr6 47616008 47616132 -101900905 + RMER12B LTR ERVK 1081 1230 -174 3 948 387 0 0 0 chr6 47616132 47616175 -101900862 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 3 948 380 305 45 68 chr6 47616175 47616236 -101900801 + RMER12B LTR ERVK 1203 1253 -151 3 948 560 27 14 0 chr6 47616236 47616310 -101900727 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 948 380 260 180 85 chr6 47616310 47616511 -101900526 + RMER12B LTR ERVK 1254 1434 -138 3 948 241 333 0 0 chr6 47616641 47616722 -101900315 - RLTR18B LTR ERVK -3 509 429 3 948 1860 60 31 39 chr6 47616753 47617012 -101900025 - L1_Mus2 LINE L1 -1 6565 6309 3 948 603 39 0 0 chr6 47617150 47617228 -101899809 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 3 948 417 39 0 0 chr6 47617552 47617603 -101899434 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 948 731 83 9 0 chr6 47617640 47617748 -101899289 + (GGA)n Simple_repeat Simple_repeat 2 110 0 3 948 783 43 0 0 chr6 47617996 47618090 -101898947 - 4.5SRNA scRNA scRNA 0 94 1 3 948 240 35 0 0 chr6 47618286 47618315 -101898722 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 3 948 630 58 0 0 chr6 47618502 47618589 -101898448 + (TCC)n Simple_repeat Simple_repeat 1 87 0 3 948 4422 246 39 38 chr6 47619067 47619336 -101897701 + RMER12B LTR ERVK 9 256 -1148 3 948 396 0 0 0 chr6 47619336 47619380 -101897657 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 3 948 4422 246 39 38 chr6 47619380 47619896 -101897141 + RMER12B LTR ERVK 257 765 -639 3 948 231 36 0 0 chr6 47619896 47619924 -101897113 + (CGAAA)n Simple_repeat Simple_repeat 3 30 0 3 948 4422 246 39 38 chr6 47619924 47620289 -101896748 + RMER12B LTR ERVK 766 1149 -255 3 948 285 29 0 0 chr6 47620289 47620323 -101896714 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 948 4422 248 145 48 chr6 47620323 47620447 -101896590 + RMER12B LTR ERVK 1081 1230 -174 3 948 423 0 0 0 chr6 47620447 47620494 -101896543 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 3 948 390 299 45 68 chr6 47620494 47620555 -101896482 + RMER12B LTR ERVK 1203 1253 -151 3 948 524 29 14 0 chr6 47620555 47620625 -101896412 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 948 390 258 180 85 chr6 47620625 47620826 -101896211 + RMER12B LTR ERVK 1254 1434 -138 3 948 1860 60 31 39 chr6 47621068 47621327 -101895710 - L1_Mus2 LINE L1 -1 6565 6309 3 948 492 32 0 0 chr6 47621465 47621527 -101895510 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 3 948 561 30 0 0 chr6 47621850 47621917 -101895120 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 948 623 91 0 20 chr6 47621955 47622056 -101894981 + (GGAGAA)n Simple_repeat Simple_repeat 6 104 0 3 948 783 43 0 0 chr6 47622304 47622398 -101894639 - 4.5SRNA scRNA scRNA 0 94 1 3 948 240 35 0 0 chr6 47622594 47622623 -101894414 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 3 948 912 9 0 0 chr6 47622810 47622915 -101894122 + (TCC)n Simple_repeat Simple_repeat 1 105 0 3 948 4487 243 39 38 chr6 47623393 47623662 -101893375 + RMER12B LTR ERVK 9 256 -1148 3 948 351 0 0 0 chr6 47623662 47623701 -101893336 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 3 948 4487 243 39 38 chr6 47623701 47624217 -101892820 + RMER12B LTR ERVK 257 765 -639 3 948 345 47 0 0 chr6 47624217 47624260 -101892777 + (CGAAA)n Simple_repeat Simple_repeat 3 45 0 3 948 4487 243 39 38 chr6 47624260 47624625 -101892412 + RMER12B LTR ERVK 766 1149 -255 3 948 285 29 0 0 chr6 47624625 47624659 -101892378 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 948 4487 246 145 48 chr6 47624659 47624783 -101892254 + RMER12B LTR ERVK 1081 1230 -174 3 948 423 0 0 0 chr6 47624783 47624830 -101892207 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 3 948 390 299 45 68 chr6 47624830 47624891 -101892146 + RMER12B LTR ERVK 1203 1253 -151 3 948 470 31 16 0 chr6 47624891 47624955 -101892082 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 948 390 258 180 85 chr6 47624955 47625156 -101891881 + RMER12B LTR ERVK 1254 1434 -138 3 948 241 333 0 0 chr6 47625286 47625367 -101891670 - RLTR18B LTR ERVK -3 509 429 3 948 1860 60 31 39 chr6 47625398 47625657 -101891380 - L1_Mus2 LINE L1 -1 6565 6309 3 948 639 37 0 0 chr6 47625795 47625877 -101891160 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 3 948 417 39 0 0 chr6 47626201 47626252 -101890785 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 948 704 86 9 0 chr6 47626289 47626394 -101890643 + (GGA)n Simple_repeat Simple_repeat 2 107 0 3 948 783 43 0 0 chr6 47626642 47626736 -101890301 - 4.5SRNA scRNA scRNA 0 94 1 3 948 240 35 0 0 chr6 47626932 47626961 -101890076 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 3 948 783 21 0 0 chr6 47627148 47627241 -101889796 + (TCC)n Simple_repeat Simple_repeat 1 93 0 3 948 4487 243 39 38 chr6 47627719 47627988 -101889049 + RMER12B LTR ERVK 9 256 -1148 3 948 396 0 0 0 chr6 47627988 47628032 -101889005 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 3 948 4487 243 39 38 chr6 47628032 47628548 -101888489 + RMER12B LTR ERVK 257 765 -639 3 948 345 47 0 0 chr6 47628548 47628591 -101888446 + (CGAAA)n Simple_repeat Simple_repeat 3 45 0 3 948 4487 243 39 38 chr6 47628591 47628956 -101888081 + RMER12B LTR ERVK 766 1149 -255 3 948 285 29 0 0 chr6 47628956 47628990 -101888047 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 948 4487 247 145 48 chr6 47628990 47629114 -101887923 + RMER12B LTR ERVK 1081 1230 -174 3 948 387 0 0 0 chr6 47629114 47629157 -101887880 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 3 948 380 305 45 68 chr6 47629157 47629218 -101887819 + RMER12B LTR ERVK 1203 1253 -151 3 948 452 32 16 0 chr6 47629218 47629280 -101887757 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 948 380 260 180 85 chr6 47629280 47629481 -101887556 + RMER12B LTR ERVK 1254 1434 -138 3 948 241 333 0 0 chr6 47629611 47629692 -101887345 - RLTR18B LTR ERVK -3 509 429 3 948 1860 60 31 39 chr6 47629723 47629982 -101887055 - L1_Mus2 LINE L1 -1 6565 6309 3 948 528 30 0 0 chr6 47630120 47630186 -101886851 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 3 948 399 41 0 0 chr6 47630509 47630558 -101886479 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 948 860 67 8 0 chr6 47630595 47630715 -101886322 + (GGA)n Simple_repeat Simple_repeat 2 122 0 3 948 783 43 0 0 chr6 47630963 47631057 -101885980 - 4.5SRNA scRNA scRNA 0 94 1 3 948 240 35 0 0 chr6 47631253 47631282 -101885755 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 3 948 756 22 0 0 chr6 47631469 47631559 -101885478 + (TCC)n Simple_repeat Simple_repeat 1 90 0 3 948 4487 243 39 38 chr6 47632037 47632306 -101884731 + RMER12B LTR ERVK 9 256 -1148 3 948 441 0 0 0 chr6 47632306 47632355 -101884682 + (CACCC)n Simple_repeat Simple_repeat 3 51 0 3 948 4487 243 39 38 chr6 47632355 47632871 -101884166 + RMER12B LTR ERVK 257 765 -639 3 948 345 47 0 0 chr6 47632871 47632914 -101884123 + (CGAAA)n Simple_repeat Simple_repeat 3 45 0 3 948 4487 243 39 38 chr6 47632914 47633279 -101883758 + RMER12B LTR ERVK 766 1149 -255 3 948 285 29 0 0 chr6 47633279 47633313 -101883724 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 948 4487 247 145 48 chr6 47633313 47633437 -101883600 + RMER12B LTR ERVK 1081 1230 -174 3 948 459 0 0 0 chr6 47633437 47633488 -101883549 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 3 948 380 305 45 68 chr6 47633488 47633549 -101883488 + RMER12B LTR ERVK 1203 1253 -151 3 948 398 36 18 0 chr6 47633549 47633605 -101883432 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 948 380 260 180 85 chr6 47633605 47633806 -101883231 + RMER12B LTR ERVK 1254 1434 -138 3 948 241 333 0 0 chr6 47633936 47634017 -101883020 - RLTR18B LTR ERVK -3 509 429 3 948 1860 60 31 39 chr6 47634048 47634307 -101882730 - L1_Mus2 LINE L1 -1 6565 6309 3 948 492 32 0 0 chr6 47634445 47634507 -101882530 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 3 948 399 41 0 0 chr6 47634830 47634879 -101882158 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 948 833 68 8 0 chr6 47634916 47635033 -101882004 + (GGA)n Simple_repeat Simple_repeat 2 119 0 3 948 783 43 0 0 chr6 47635281 47635375 -101881662 - 4.5SRNA scRNA scRNA 0 94 1 3 948 240 35 0 0 chr6 47635571 47635600 -101881437 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 3 948 729 23 0 0 chr6 47635787 47635874 -101881163 + (TCC)n Simple_repeat Simple_repeat 1 87 0 3 948 2107 261 20 54 chr6 47636352 47636621 -101880416 + RMER12B LTR ERVK 9 256 -1148 3 948 396 0 0 0 chr6 47636621 47636665 -101880372 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 3 948 2107 261 20 54 chr6 47636665 47637038 -101879999 + RMER12B LTR ERVK 257 628 -776 3 948 3245 237 53 27 chr6 47687038 47687485 -101829552 + RMER12B LTR ERVK 327 766 -638 3 948 345 47 0 0 chr6 47687485 47687528 -101829509 + (CGAAA)n Simple_repeat Simple_repeat 3 45 0 3 948 3245 237 53 27 chr6 47687528 47687893 -101829144 + RMER12B LTR ERVK 767 1150 -254 3 948 285 29 0 0 chr6 47687893 47687927 -101829110 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 948 3245 250 151 41 chr6 47687927 47688051 -101828986 + RMER12B LTR ERVK 1081 1231 -173 3 948 351 0 0 0 chr6 47688051 47688090 -101828947 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 948 399 288 51 74 chr6 47688090 47688151 -101828886 + RMER12B LTR ERVK 1203 1253 -151 3 948 434 33 17 0 chr6 47688151 47688211 -101828826 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 948 399 272 178 83 chr6 47688211 47688412 -101828625 + RMER12B LTR ERVK 1254 1433 -139 3 948 241 333 0 0 chr6 47688542 47688623 -101828414 - RLTR18B LTR ERVK -3 509 429 3 948 1799 65 35 39 chr6 47688654 47688912 -101828125 - L1_Mus2 LINE L1 -1 6565 6309 3 948 513 32 0 0 chr6 47689050 47689113 -101827924 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 3 948 273 57 0 0 chr6 47689440 47689475 -101827562 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 948 998 16 0 16 chr6 47689513 47689638 -101827399 + (GGAGAA)n Simple_repeat Simple_repeat 6 128 0 3 948 714 54 11 0 chr6 47689877 47689970 -101827067 - 4.5SRNA scRNA scRNA 0 94 1 3 948 240 35 0 0 chr6 47690166 47690195 -101826842 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 3 948 210 37 0 0 chr6 47690389 47690416 -101826621 + (TCC)n Simple_repeat Simple_repeat 1 27 0 3 948 4418 242 37 57 chr6 47690895 47691708 -101825329 + RMER12B LTR ERVK 9 766 -638 3 948 417 95 0 0 chr6 47691708 47691771 -101825266 + (CGAAA)n Simple_repeat Simple_repeat 3 65 0 3 948 4418 242 37 57 chr6 47691771 47692136 -101824901 + RMER12B LTR ERVK 767 1150 -254 3 948 285 29 0 0 chr6 47692136 47692170 -101824867 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 948 4418 252 142 58 chr6 47692170 47692294 -101824743 + RMER12B LTR ERVK 1081 1231 -173 3 948 387 0 0 0 chr6 47692294 47692337 -101824700 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 4 948 399 288 51 74 chr6 47692337 47692398 -101824639 + RMER12B LTR ERVK 1203 1253 -151 3 948 542 28 14 0 chr6 47692398 47692470 -101824567 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 948 399 272 178 83 chr6 47692470 47692671 -101824366 + RMER12B LTR ERVK 1254 1433 -139 3 948 241 333 0 0 chr6 47692801 47692882 -101824155 - RLTR18B LTR ERVK -3 509 429 4 948 1799 65 35 39 chr6 47692913 47693171 -101823866 - L1_Mus2 LINE L1 -1 6565 6309 4 948 621 27 0 0 chr6 47693309 47693384 -101823653 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 4 948 273 57 0 0 chr6 47693711 47693746 -101823291 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 948 911 9 0 18 chr6 47693784 47693897 -101823140 + (GGAGAA)n Simple_repeat Simple_repeat 6 116 0 4 948 783 43 0 0 chr6 47694136 47694230 -101822807 - 4.5SRNA scRNA scRNA 0 94 1 4 948 240 35 0 0 chr6 47694426 47694455 -101822582 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 4 948 837 20 0 0 chr6 47694649 47694748 -101822289 + (TCC)n Simple_repeat Simple_repeat 1 99 0 4 948 4456 245 39 38 chr6 47695226 47695495 -101821542 + RMER12B LTR ERVK 9 256 -1148 4 948 396 0 0 0 chr6 47695495 47695539 -101821498 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 4 948 4456 245 39 38 chr6 47695539 47696055 -101820982 + RMER12B LTR ERVK 257 765 -639 4 948 255 61 0 0 chr6 47696055 47696088 -101820949 + (CGAAA)n Simple_repeat Simple_repeat 3 35 0 4 948 4456 245 39 38 chr6 47696088 47696453 -101820584 + RMER12B LTR ERVK 766 1149 -255 4 948 285 29 0 0 chr6 47696453 47696487 -101820550 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 948 4456 254 143 47 chr6 47696487 47696611 -101820426 + RMER12B LTR ERVK 1081 1230 -174 4 948 387 0 0 0 chr6 47696611 47696654 -101820383 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 4 948 399 288 51 74 chr6 47696654 47696715 -101820322 + RMER12B LTR ERVK 1203 1253 -151 4 948 578 26 13 0 chr6 47696715 47696791 -101820246 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 948 399 268 178 83 chr6 47696791 47696992 -101820045 + RMER12B LTR ERVK 1254 1433 -139 4 948 231 346 0 0 chr6 47697122 47697203 -101819834 - RLTR18B LTR ERVK -3 509 429 4 948 1799 65 35 39 chr6 47697234 47697492 -101819545 - L1_Mus2 LINE L1 -1 6565 6309 4 948 576 29 0 0 chr6 47697630 47697700 -101819337 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 4 948 291 54 0 0 chr6 47698024 47698061 -101818976 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 948 1289 7 0 13 chr6 47698099 47698254 -101818783 + (GGAGAA)n Simple_repeat Simple_repeat 6 158 0 4 948 783 43 0 0 chr6 47698496 47698590 -101818447 - 4.5SRNA scRNA scRNA 0 94 1 4 948 240 35 0 0 chr6 47698786 47698815 -101818222 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 4 948 702 24 0 0 chr6 47699009 47699093 -101817944 + (TCC)n Simple_repeat Simple_repeat 1 84 0 4 948 4451 245 39 38 chr6 47699571 47699840 -101817197 + RMER12B LTR ERVK 9 256 -1148 4 948 351 0 0 0 chr6 47699840 47699879 -101817158 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 4 948 4451 245 39 38 chr6 47699879 47700396 -101816641 + RMER12B LTR ERVK 257 765 -639 4 948 345 47 0 0 chr6 47700396 47700439 -101816598 + (CGAAA)n Simple_repeat Simple_repeat 3 45 0 4 948 4451 245 39 38 chr6 47700439 47700804 -101816233 + RMER12B LTR ERVK 766 1149 -255 4 948 285 29 0 0 chr6 47700804 47700838 -101816199 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 948 4451 254 143 47 chr6 47700838 47700962 -101816075 + RMER12B LTR ERVK 1081 1230 -174 4 948 387 0 0 0 chr6 47700962 47701005 -101816032 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 4 948 399 288 51 74 chr6 47701005 47701066 -101815971 + RMER12B LTR ERVK 1203 1253 -151 4 948 542 28 14 0 chr6 47701066 47701138 -101815899 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 948 399 268 178 83 chr6 47701138 47701339 -101815698 + RMER12B LTR ERVK 1254 1433 -139 4 948 231 346 0 0 chr6 47701469 47701550 -101815487 - RLTR18B LTR ERVK -3 509 429 4 948 1799 65 35 39 chr6 47701581 47701839 -101815198 - L1_Mus2 LINE L1 -1 6565 6309 4 948 693 24 0 0 chr6 47701977 47702060 -101814977 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 4 948 273 57 0 0 chr6 47702387 47702422 -101814615 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 948 1052 16 0 15 chr6 47702460 47702591 -101814446 + (GGAGAA)n Simple_repeat Simple_repeat 6 134 0 4 948 783 43 0 0 chr6 47702830 47702924 -101814113 - 4.5SRNA scRNA scRNA 0 94 1 4 948 240 35 0 0 chr6 47703120 47703149 -101813888 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 4 948 378 42 0 0 chr6 47703343 47703391 -101813646 + (TCC)n Simple_repeat Simple_repeat 1 48 0 4 948 296 167 0 0 chr6 47703869 47703923 -101813114 + RMER12B LTR ERVK 9 62 -1342 4 948 4383 242 37 58 chr6 47704426 47705240 -101811797 + RMER12B LTR ERVK 9 766 -638 4 948 329 75 0 19 chr6 47705240 47705294 -101811743 + (CGAAA)n Simple_repeat Simple_repeat 3 55 0 4 948 4383 242 37 58 chr6 47705294 47705660 -101811377 + RMER12B LTR ERVK 767 1150 -254 4 948 285 29 0 0 chr6 47705660 47705694 -101811343 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 948 4383 252 142 58 chr6 47705694 47705818 -101811219 + RMER12B LTR ERVK 1081 1231 -173 4 948 387 0 0 0 chr6 47705818 47705861 -101811176 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 4 948 399 288 51 74 chr6 47705861 47705922 -101811115 + RMER12B LTR ERVK 1203 1253 -151 4 948 506 29 15 0 chr6 47705922 47705990 -101811047 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 948 399 268 178 83 chr6 47705990 47706191 -101810846 + RMER12B LTR ERVK 1254 1433 -139 4 948 231 346 0 0 chr6 47706321 47706402 -101810635 - RLTR18B LTR ERVK -3 509 429 4 948 1799 65 35 39 chr6 47706433 47706691 -101810346 - L1_Mus2 LINE L1 -1 6565 6309 4 948 585 28 0 0 chr6 47706829 47706900 -101810137 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 4 948 273 57 0 0 chr6 47707227 47707262 -101809775 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 948 1019 8 0 16 chr6 47707300 47707425 -101809612 + (GGAGAA)n Simple_repeat Simple_repeat 6 128 0 4 948 763 53 0 0 chr6 47707664 47707758 -101809279 - 4.5SRNA scRNA scRNA 0 94 1 4 948 240 35 0 0 chr6 47707954 47707983 -101809054 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 4 948 702 24 0 0 chr6 47708174 47708258 -101808779 + (TCC)n Simple_repeat Simple_repeat 1 84 0 4 948 4438 246 39 38 chr6 47708736 47709005 -101808032 + RMER12B LTR ERVK 9 256 -1148 4 948 396 0 0 0 chr6 47709005 47709049 -101807988 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 4 948 4438 246 39 38 chr6 47709049 47709565 -101807472 + RMER12B LTR ERVK 257 765 -639 4 948 414 57 0 0 chr6 47709565 47709618 -101807419 + (CGAAA)n Simple_repeat Simple_repeat 3 55 0 4 948 4438 246 39 38 chr6 47709618 47709983 -101807054 + RMER12B LTR ERVK 766 1149 -255 4 948 285 29 0 0 chr6 47709983 47710017 -101807020 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 948 4438 255 143 47 chr6 47710017 47710141 -101806896 + RMER12B LTR ERVK 1081 1230 -174 4 948 351 0 0 0 chr6 47710141 47710180 -101806857 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 4 118 399 288 51 74 chr6 47710180 47710241 -101806796 + RMER12B LTR ERVK 1203 1253 -151 4 949 506 29 15 0 chr6 47710241 47710309 -101806728 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 949 399 272 178 83 chr6 47710309 47710510 -101806527 + RMER12B LTR ERVK 1254 1433 -139 4 949 241 333 0 0 chr6 47710640 47710721 -101806316 - RLTR18B LTR ERVK -3 509 429 4 949 1799 65 35 39 chr6 47710752 47711010 -101806027 - L1_Mus2 LINE L1 -1 6565 6309 4 949 540 30 0 0 chr6 47711148 47711214 -101805823 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 4 949 306 87 0 0 chr6 47711538 47711584 -101805453 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 949 333 276 55 94 chr6 47711586 47711785 -101805252 + RMER12B LTR ERVK 1291 1435 -137 4 949 231 346 0 0 chr6 47711915 47711996 -101805041 - RLTR18B LTR ERVK -3 509 429 4 949 1799 65 35 39 chr6 47712027 47712285 -101804752 - L1_Mus2 LINE L1 -1 6565 6309 4 949 513 32 0 0 chr6 47712423 47712486 -101804551 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 4 949 291 54 0 0 chr6 47712813 47712850 -101804187 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 949 1182 7 0 0 chr6 47712888 47713023 -101804014 + (GGAGAA)n Simple_repeat Simple_repeat 6 140 0 4 949 783 43 0 0 chr6 47713262 47713356 -101803681 - 4.5SRNA scRNA scRNA 0 94 1 4 949 240 35 0 0 chr6 47713552 47713581 -101803456 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 4 949 378 42 0 0 chr6 47713777 47713825 -101803212 + (TCC)n Simple_repeat Simple_repeat 1 48 0 4 949 4456 245 39 38 chr6 47714303 47714572 -101802465 + RMER12B LTR ERVK 9 256 -1148 4 949 408 20 0 0 chr6 47714572 47714621 -101802416 + (CACCC)n Simple_repeat Simple_repeat 3 51 0 4 949 4456 245 39 38 chr6 47714621 47715137 -101801900 + RMER12B LTR ERVK 257 765 -639 4 949 345 47 0 0 chr6 47715137 47715180 -101801857 + (CGAAA)n Simple_repeat Simple_repeat 3 45 0 4 949 4456 245 39 38 chr6 47715180 47715545 -101801492 + RMER12B LTR ERVK 766 1149 -255 4 949 285 29 0 0 chr6 47715545 47715579 -101801458 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 949 4456 254 143 47 chr6 47715579 47715703 -101801334 + RMER12B LTR ERVK 1081 1230 -174 4 949 387 0 0 0 chr6 47715703 47715746 -101801291 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 4 949 399 288 51 74 chr6 47715746 47715807 -101801230 + RMER12B LTR ERVK 1203 1253 -151 4 949 488 30 15 0 chr6 47715807 47715873 -101801164 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 949 399 268 178 83 chr6 47715873 47716074 -101800963 + RMER12B LTR ERVK 1254 1433 -139 4 949 241 333 0 0 chr6 47716204 47716285 -101800752 - RLTR18B LTR ERVK -3 509 429 4 949 1804 68 31 39 chr6 47716316 47716575 -101800462 - L1_Mus2 LINE L1 -1 6565 6309 4 949 498 61 0 0 chr6 47716713 47716779 -101800258 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 4 949 567 53 0 0 chr6 47717074 47717149 -101799888 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 949 1035 75 0 0 chr6 47717187 47717346 -101799691 + (GGAGAA)n Simple_repeat Simple_repeat 6 164 0 4 949 577 40 0 0 chr6 47717585 47717660 -101799377 - 4.5SRNA scRNA scRNA 0 94 20 4 949 334 256 0 62 chr6 47717591 47717687 -101799350 - PB1D10 SINE Alu -27 90 1 4 949 240 35 0 0 chr6 47717856 47717885 -101799152 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 4 949 702 24 0 0 chr6 47718079 47718163 -101798874 + (TCC)n Simple_repeat Simple_repeat 1 84 0 4 949 4440 241 37 57 chr6 47718641 47719454 -101797583 + RMER12B LTR ERVK 9 766 -638 4 949 417 95 0 0 chr6 47719454 47719517 -101797520 + (CGAAA)n Simple_repeat Simple_repeat 3 65 0 4 949 4440 241 37 57 chr6 47719517 47719882 -101797155 + RMER12B LTR ERVK 767 1150 -254 4 949 266 0 0 29 chr6 47719882 47719917 -101797120 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 949 4440 252 142 58 chr6 47719917 47720041 -101796996 + RMER12B LTR ERVK 1081 1231 -173 4 949 495 0 0 0 chr6 47720041 47720096 -101796941 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 4 949 390 294 51 74 chr6 47720096 47720157 -101796880 + RMER12B LTR ERVK 1203 1253 -151 4 949 524 29 14 0 chr6 47720157 47720227 -101796810 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 949 390 272 177 86 chr6 47720227 47720429 -101796608 + RMER12B LTR ERVK 1254 1433 -139 4 949 257 321 0 0 chr6 47720559 47720640 -101796397 - RLTR18B LTR ERVK -3 509 429 4 949 1811 64 31 42 chr6 47720671 47720931 -101796106 - L1_Mus2 LINE L1 -1 6565 6309 4 949 444 91 0 0 chr6 47721069 47721135 -101795902 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 4 949 456 19 0 0 chr6 47721459 47721512 -101795525 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 949 1371 62 0 0 chr6 47721573 47721751 -101795286 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 4 949 577 40 0 0 chr6 47721992 47722067 -101794970 - 4.5SRNA scRNA scRNA 0 94 20 4 949 334 256 0 62 chr6 47721998 47722094 -101794943 - PB1D10 SINE Alu -27 90 1 4 949 240 35 0 0 chr6 47722263 47722292 -101794745 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 4 949 599 26 13 0 chr6 47722486 47722563 -101794474 + (TCC)n Simple_repeat Simple_repeat 1 78 0 5 949 4081 226 37 120 chr6 47723041 47723259 -101793778 + RMER12B LTR ERVK 9 205 -1199 5 949 3612 13 2 0 chr6 47723259 47723654 -101793383 + MTA_Mm LTR MaLR 1 396 0 5 949 9816 16 0 1 chr6 47723654 47724753 -101792284 + MTA_Mm-int LTR MaLR 1 1098 0 5 949 3612 13 2 0 chr6 47724753 47725148 -101791889 + MTA_Mm LTR MaLR 1 396 0 5 949 4081 226 37 120 chr6 47725148 47726165 -101790872 + RMER12B LTR ERVK 206 1146 -258 5 949 338 0 0 23 chr6 47726165 47726208 -101790829 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 949 4081 239 97 100 chr6 47726208 47726417 -101790620 + RMER12B LTR ERVK 1081 1305 -267 5 949 491 43 14 0 chr6 47726417 47726487 -101790550 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 949 597 269 120 95 chr6 47726487 47726689 -101790348 + RMER12B LTR ERVK 1291 1425 -147 5 949 249 321 0 0 chr6 47726819 47726900 -101790137 - RLTR18B LTR ERVK -3 509 429 5 949 1830 57 31 39 chr6 47726934 47727190 -101789847 - L1_Mus2 LINE L1 -4 6562 6309 5 949 552 30 0 0 chr6 47727328 47727394 -101789643 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 5 949 486 75 0 0 chr6 47727692 47727759 -101789278 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 949 1296 51 0 0 chr6 47727826 47728003 -101789034 + (GGAGAA)n Simple_repeat Simple_repeat 4 180 0 5 949 727 85 0 0 chr6 47728244 47728338 -101788699 - 4.5SRNA scRNA scRNA 0 94 1 5 949 183 114 0 0 chr6 47728533 47728568 -101788469 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 5 949 24 53 0 0 chr6 47728754 47728792 -101788245 + AT_rich Low_complexity Low_complexity 1 38 0 5 949 1364 73 0 11 chr6 47729362 47729521 -101787516 + B2_Mm2 SINE B2 1 159 -36 5 949 180 0 0 0 chr6 47729521 47729541 -101787496 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5 949 1364 73 0 11 chr6 47729541 47729560 -101787477 + B2_Mm2 SINE B2 160 176 -19 5 949 189 0 0 0 chr6 47730001 47730022 -101787015 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 949 308 24 24 0 chr6 47730160 47730201 -101786836 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 949 1225 98 22 5 chr6 47730504 47730688 -101786349 - B2_Mm2 SINE B2 -7 188 2 5 949 842 50 0 0 chr6 47731622 47731723 -101785314 + HY3 scRNA scRNA 1 101 0 5 949 252 236 68 14 chr6 47732349 47732422 -101784615 - MER53 DNA hAT -78 115 39 5 949 236 314 101 74 chr6 47732422 47732611 -101784426 + MLT1A0 LTR MaLR 1 194 -171 5 949 4555 10 0 0 chr6 47732689 47733182 -101783855 + MT2_Mm LTR ERVL 1 493 0 5 949 540 0 0 0 chr6 47733254 47733314 -101783723 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 949 336 289 65 0 chr6 47733345 47733452 -101783585 + B1_Mm SINE Alu 3 116 -33 5 949 297 0 0 0 chr6 47734009 47734042 -101782995 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 949 1159 75 0 7 chr6 47734469 47734616 -101782421 + B1_Mus2 SINE Alu 2 147 0 5 949 375 23 0 0 chr6 47734619 47734663 -101782374 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 949 222 242 86 114 chr6 47734970 47735040 -101781997 - RSINE1 SINE B4 -51 114 47 5 949 327 85 0 0 chr6 47735048 47735095 -101781942 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 949 231 203 0 0 chr6 47735898 47735957 -101781080 + T-rich Low_complexity Low_complexity 1 59 0 5 949 3487 20 5 5 chr6 47736738 47737134 -101779903 - MTA_Mm LTR MaLR 0 396 1 5 949 951 18 9 0 chr6 47738068 47738179 -101778858 - HY1 scRNA scRNA 0 112 1 5 949 537 16 0 0 chr6 47738807 47738869 -101778168 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 949 448 263 73 29 chr6 47739433 47739570 -101777467 + B1_Mur1 SINE Alu 5 147 -2 5 949 23 33 0 0 chr6 47739580 47739610 -101777427 + AT_rich Low_complexity Low_complexity 1 30 0 5 949 253 283 11 21 chr6 47739684 47739778 -101777259 + GA-rich Low_complexity Low_complexity 1 93 0 5 949 243 138 0 84 chr6 47739917 47739988 -101777049 + (TTATA)n Simple_repeat Simple_repeat 2 66 0 5 949 658 183 7 44 chr6 47740386 47740523 -101776514 + B1_Mus1 SINE Alu 1 132 -16 5 949 344 167 0 0 chr6 47740799 47740853 -101776184 - ORR1D2 LTR MaLR -1 369 316 5 949 1789 158 70 52 chr6 47740853 47741367 -101775670 + RLTR31A_Mm LTR ERVK 1 561 0 5 949 330 167 14 43 chr6 47741367 47741434 -101775603 - ORR1D2 LTR MaLR -49 321 257 5 949 452 204 8 58 chr6 47741438 47741558 -101775479 + L1MB7 LINE L1 5834 5947 -237 5 949 1017 178 134 109 chr6 47741569 47741928 -101775109 + RLTR9A LTR ERVK 1 368 0 5 949 278 272 0 7 chr6 47741929 47742006 -101775031 + L1MB7 LINE L1 6059 6132 -51 5 949 887 93 16 16 chr6 47742102 47742243 -101774794 - B2_Mm2 SINE B2 -65 151 1 5 949 669 224 8 23 chr6 47742290 47742418 -101774619 - RSINE1 SINE B4 -15 150 25 5 949 568 245 120 40 chr6 47742641 47742841 -101774196 + B3 SINE B2 1 216 0 5 949 3832 133 123 9 chr6 47743047 47743724 -101773313 + RMER6A LTR ERVK 3 756 0 5 949 372 44 0 0 chr6 47744017 47744062 -101772975 + B2_Mm2 SINE B2 1 45 -150 5 949 2210 169 181 23 chr6 47744379 47744853 -101772184 + Lx6 LINE L1 6725 7273 -187 5 949 972 95 0 7 chr6 47745214 47745352 -101771685 - B2_Mm2 SINE B2 -18 177 41 5 949 857 104 97 0 chr6 47745436 47745570 -101771467 - B1_Mus2 SINE Alu 0 147 1 5 949 1187 42 0 0 chr6 47745675 47745818 -101771219 - B2_Mm1a SINE B2 -49 144 2 5 949 308 301 98 43 chr6 47746107 47746291 -101770746 + L1M2 LINE L1 3095 3288 -2855 5 949 438 257 27 9 chr6 47747444 47747554 -101769483 + PB1D10 SINE Alu 6 117 0 5 949 189 107 0 0 chr6 47748234 47748262 -101768775 + (T)n Simple_repeat Simple_repeat 1 28 0 5 949 181 290 16 31 chr6 47748765 47748829 -101768208 + MIR3 SINE MIR 10 72 -136 5 949 344 306 112 82 chr6 47750103 47750299 -101766738 - RLTR26 LTR ERVK -344 298 97 5 949 1485 208 72 13 chr6 47750505 47750812 -101766225 + ORR1C2 LTR MaLR 60 384 0 5 949 183 80 0 0 chr6 47751197 47751222 -101765815 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 5 949 1206 68 0 0 chr6 47751246 47751392 -101765645 - B1_Mus1 SINE Alu -2 146 1 5 949 4902 113 99 13 chr6 47751711 47752542 -101764495 + RMER17A2 LTR ERVK 5 906 0 5 949 650 157 107 8 chr6 47752674 47752796 -101764241 + B1_Mur4 SINE Alu 16 149 -1 5 949 258 338 0 0 chr6 47753302 47753370 -101763667 - ID4_ SINE ID -2 81 14 5 949 1236 246 102 15 chr6 47754778 47755112 -101761925 + ORR1D2 LTR MaLR 1 363 -7 5 949 263 71 24 0 chr6 47755551 47755593 -101761444 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 949 298 172 17 0 chr6 47755593 47755651 -101761386 - B1_Mur3 SINE Alu -8 141 83 5 949 429 266 21 11 chr6 47755844 47755939 -101761098 + B1F1 SINE Alu 3 98 -51 5 949 326 259 80 53 chr6 47755990 47756006 -101761031 + ID_B1 SINE B4 70 222 0 5 949 541 204 68 8 chr6 47756006 47756139 -101760898 + B1_Mur4 SINE Alu 10 150 0 5 949 456 270 39 31 chr6 47756143 47756273 -101760764 + RSINE1 SINE B4 4 134 -31 5 949 324 0 0 0 chr6 47756278 47756314 -101760723 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 949 601 164 175 48 chr6 47756684 47756850 -101760187 + ORR1C2 LTR MaLR 198 384 0 5 949 290 277 172 50 chr6 47756906 47757005 -101760032 - B4 SINE B4 0 292 182 5 949 516 262 56 14 chr6 47757831 47757974 -101759063 + RSINE1 SINE B4 3 151 -14 5 949 245 29 0 29 chr6 47757982 47758017 -101759020 + (TAA)n Simple_repeat Simple_repeat 2 35 0 5 949 198 103 0 0 chr6 47758287 47758316 -101758721 + (TCC)n Simple_repeat Simple_repeat 2 30 0 5 949 1257 28 0 0 chr6 47758830 47758973 -101758064 + B1_Mus2 SINE Alu 1 143 -4 5 949 188 0 74 0 chr6 47758975 47759002 -101758035 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 949 890 127 49 7 chr6 47760725 47760868 -101756169 + B1_Mur4 SINE Alu 1 149 -1 5 949 22 0 0 0 chr6 47760965 47760987 -101756050 + AT_rich Low_complexity Low_complexity 1 22 0 5 949 648 231 107 28 chr6 47761027 47761205 -101755832 - B3A SINE B2 -5 193 2 5 949 215 79 26 0 chr6 47761620 47761658 -101755379 + (CAA)n Simple_repeat Simple_repeat 2 40 0 5 949 235 224 29 43 chr6 47762004 47762074 -101754963 + MT2B LTR ERVL 188 256 -345 5 949 474 163 118 11 chr6 47762017 47762110 -101754927 + B1_Mur2 SINE Alu 46 148 -1 5 949 320 64 0 21 chr6 47764069 47764117 -101752920 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 5 949 233 327 18 18 chr6 47764442 47764551 -101752486 - ALINE LINE RTE -282 335 227 5 949 448 265 41 0 chr6 47764794 47764892 -101752145 + PB1 SINE Alu 23 124 -3 5 949 309 327 87 0 chr6 47764952 47765056 -101751981 - B3 SINE B2 0 216 104 5 949 266 176 26 26 chr6 47765084 47765160 -101751877 + T-rich Low_complexity Low_complexity 4 79 0 5 949 444 82 0 0 chr6 47765194 47765255 -101751782 + (T)n Simple_repeat Simple_repeat 1 61 0 5 949 871 187 7 0 chr6 47765701 47765840 -101751197 - B1_Mus2 SINE Alu -7 140 1 5 949 867 250 0 32 chr6 47765853 47766039 -101750998 - B3 SINE B2 0 216 37 5 949 826 254 5 45 chr6 47766065 47766263 -101750774 - B3A SINE B2 0 198 9 5 949 556 220 8 8 chr6 47766348 47766467 -101750570 - PB1D9 SINE Alu 0 120 2 5 949 1191 103 17 33 chr6 47767209 47767390 -101749647 + B2_Mm1t SINE B2 2 179 -14 5 949 339 328 62 88 chr6 47767483 47767677 -101749360 + B3A SINE B2 4 192 -6 5 949 427 261 98 100 chr6 47767689 47767920 -101749117 + B4 SINE B4 78 276 -16 5 949 609 282 0 13 chr6 47767961 47768112 -101748925 + B3 SINE B2 1 149 -67 5 949 334 146 44 89 chr6 47768487 47768577 -101748460 + B1_Mur2 SINE Alu 13 99 -51 5 949 844 126 237 7 chr6 47768624 47768776 -101748261 - B2_Mm2 SINE B2 -7 188 2 5 949 1224 41 0 14 chr6 47769076 47769224 -101747813 + B1_Mus2 SINE Alu 2 147 0 5 949 180 0 0 0 chr6 47769224 47769244 -101747793 + (A)n Simple_repeat Simple_repeat 1 20 0 6 949 244 291 45 45 chr6 47769883 47770016 -101747021 - MMSAT4 Satellite Satellite 0 168 36 6 949 236 299 54 54 chr6 47770133 47770299 -101746738 - MMSAT4 Satellite Satellite -1 167 2 6 949 527 285 170 16 chr6 47772070 47772252 -101744785 + B3 SINE B2 7 216 0 6 949 662 229 7 34 chr6 47772259 47772273 -101744764 - B1_Mur1 SINE Alu -3 146 136 6 949 192 40 0 0 chr6 47772273 47772298 -101744739 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 949 662 229 7 34 chr6 47772298 47772432 -101744605 - B1_Mur1 SINE Alu -14 135 2 6 949 32 0 0 0 chr6 47772433 47772465 -101744572 + AT_rich Low_complexity Low_complexity 1 32 0 6 949 1131 224 18 74 chr6 47772694 47772978 -101744059 + MTEa LTR MaLR 108 375 -4 6 949 668 278 80 5 chr6 47772982 47773170 -101743867 + MTEa-int LTR MaLR 1 202 -1378 6 949 2481 237 72 7 chr6 47773166 47773723 -101743314 + MTEa-int LTR MaLR 768 1360 -220 6 949 1509 168 123 66 chr6 47773879 47774229 -101742808 + ORR1D1 LTR MaLR 1 370 -4 6 949 3103 84 14 0 chr6 47774368 47774783 -101742254 + BGLII LTR ERVK 1 421 0 6 949 237 65 0 0 chr6 47774845 47774876 -101742161 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 949 399 306 24 24 chr6 47774877 47775004 -101742033 - ID_B1 SINE B4 -5 219 93 6 949 855 225 11 6 chr6 47775258 47775432 -101741605 + B3 SINE B2 42 216 0 6 949 529 288 55 79 chr6 47775528 47775818 -101741219 - B4 SINE B4 -9 283 1 6 949 686 193 22 7 chr6 47775882 47776018 -101741019 - B1_Mur2 SINE Alu -7 142 5 6 949 401 222 11 22 chr6 47776029 47776121 -101740916 - 4.5SRNA scRNA scRNA -3 91 1 6 949 679 221 63 0 chr6 47776125 47776252 -101740785 + B1_Mur2 SINE Alu 13 147 -2 6 949 362 134 0 15 chr6 47776389 47776457 -101740580 + (GGA)n Simple_repeat Simple_repeat 3 69 0 6 949 569 246 254 12 chr6 47777227 47777400 -101739637 + B3 SINE B2 2 216 0 6 949 449 244 0 56 chr6 47777713 47777839 -101739198 - PB1D9 SINE Alu -1 119 1 6 949 573 86 0 0 chr6 47777905 47777998 -101739039 + (TTCTCC)n Simple_repeat Simple_repeat 4 96 0 6 949 1149 83 0 0 chr6 47778001 47778146 -101738891 - B1_Mus2 SINE Alu 0 147 3 6 949 681 13 0 0 chr6 47778146 47778224 -101738813 + (TTC)n Simple_repeat Simple_repeat 2 79 0 6 949 792 181 7 27 chr6 47778809 47778957 -101738080 + B1_Mm SINE Alu 3 147 0 6 949 410 258 33 0 chr6 47779059 47779179 -101737858 + MER20 DNA MER1_type 5 128 -91 6 949 345 214 21 53 chr6 47779228 47779322 -101737715 + Tigger7 DNA MER2_type 289 379 -2112 6 949 272 313 0 0 chr6 47779340 47779423 -101737614 - PB1D9 SINE Alu -8 112 30 6 949 482 329 36 18 chr6 47779433 47779656 -101737381 + Tigger7 DNA MER2_type 381 607 -1884 6 949 558 0 0 0 chr6 47781216 47781278 -101735759 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 949 333 325 30 38 chr6 47781383 47781514 -101735523 + RSINE1 SINE B4 2 131 -34 6 949 448 206 22 0 chr6 47781564 47781656 -101735381 - PB1D9 SINE Alu -21 99 6 6 949 299 326 22 0 chr6 47781581 47781673 -101735364 - B4 SINE B4 -125 167 74 6 949 4228 105 16 23 chr6 47781764 47782457 -101734580 - RLTR19B LTR ERVK -7 708 21 6 949 425 211 145 23 chr6 47782451 47782582 -101734455 - B3A SINE B2 -51 147 1 6 949 615 161 35 18 chr6 47782973 47783087 -101733950 - B1_Mur1 SINE Alu -13 136 21 6 949 696 98 0 0 chr6 47783085 47783187 -101733850 + B1_Mus1 SINE Alu 35 136 -12 6 949 324 0 38 38 chr6 47783187 47783240 -101733797 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 6 949 311 325 47 21 chr6 47783250 47783440 -101733597 - L1MD LINE L1 -464 5778 5589 6 949 982 227 34 0 chr6 47783445 47783652 -101733385 - B3 SINE B2 -1 215 2 6 949 715 117 192 7 chr6 47783756 47783902 -101733135 - RLTR15 LTR ERVK -186 173 1 6 949 291 228 0 0 chr6 47784014 47784071 -101732966 + ID_B1 SINE B4 112 168 -56 6 949 214 237 0 132 chr6 47784071 47784082 -101732955 + PB1D10 SINE Alu 31 89 -28 6 949 547 297 7 0 chr6 47784203 47784341 -101732696 - B1_Mur3 SINE Alu -10 139 1 6 949 376 35 17 17 chr6 47784365 47784424 -101732613 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 949 967 138 0 0 chr6 47784424 47784562 -101732475 - B1_Mur4 SINE Alu -11 139 2 6 949 182 174 22 0 chr6 47784632 47784678 -101732359 + CT-rich Low_complexity Low_complexity 2 48 0 6 949 355 295 9 19 chr6 47785165 47785272 -101731765 + B3 SINE B2 84 189 -27 6 949 202 195 0 0 chr6 47786639 47786680 -101730357 + G-rich Low_complexity Low_complexity 5 45 0 6 949 237 180 0 0 chr6 47786910 47786960 -101730077 + A-rich Low_complexity Low_complexity 1 50 0 6 949 26 50 0 0 chr6 47787008 47787048 -101729989 + AT_rich Low_complexity Low_complexity 1 40 0 6 949 313 222 44 11 chr6 47787051 47787142 -101729895 - MER33 DNA MER1_type -229 95 2 6 949 22 0 0 0 chr6 47787176 47787198 -101729839 + AT_rich Low_complexity Low_complexity 1 22 0 6 949 960 251 5 14 chr6 47787210 47787428 -101729609 + B3 SINE B2 1 216 0 6 949 1327 266 116 4 chr6 47787441 47787898 -101729139 - Lx8 LINE L1 0 7473 6966 6 949 237 159 0 0 chr6 47787967 47788011 -101729026 + (CTA)n Simple_repeat Simple_repeat 2 45 0 6 949 545 214 110 8 chr6 47788013 47788140 -101728897 - B1_Mur1 SINE Alu -4 145 6 6 949 867 174 0 13 chr6 47788339 47788490 -101728547 - B1_Mur4 SINE Alu 0 150 2 6 949 252 291 65 46 chr6 47788571 47788679 -101728358 + MER5A1 DNA MER1_type 15 124 -42 6 949 375 255 10 30 chr6 47788715 47788816 -101728221 - B1F1 SINE Alu -17 132 34 6 949 519 267 0 33 chr6 47788815 47788935 -101728102 - RSINE1 SINE B4 -45 120 5 6 949 203 323 40 20 chr6 47789540 47789641 -101727396 - L3 LINE CR1 -251 4238 4136 6 949 646 175 16 8 chr6 47790035 47790162 -101726875 - B1_Mur4 SINE Alu -20 130 3 6 949 385 202 78 29 chr6 47790824 47790926 -101726111 - PB1D10 SINE Alu -1 116 10 6 949 410 208 57 0 chr6 47791410 47791516 -101725521 + B1_Mur4 SINE Alu 18 129 -21 6 949 417 39 0 0 chr6 47791570 47791621 -101725416 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 6 949 328 281 37 0 chr6 47791628 47791710 -101725327 - PB1D10 SINE Alu -15 102 18 6 949 193 318 77 83 chr6 47792377 47792689 -101724348 - L2 LINE L2 -1198 2221 1912 6 949 204 62 62 0 chr6 47792695 47792727 -101724310 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 6 949 529 234 175 0 chr6 47792764 47792901 -101724136 + B3 SINE B2 28 188 -28 6 949 25 0 0 0 chr6 47793082 47793107 -101723930 + AT_rich Low_complexity Low_complexity 1 25 0 6 949 433 288 9 9 chr6 47793318 47793430 -101723607 + B1F2 SINE Alu 1 112 -37 6 949 712 284 102 0 chr6 47793462 47793659 -101723378 + ID_B1 SINE B4 8 224 0 6 949 271 184 0 20 chr6 47793671 47793721 -101723316 + PB1D9 SINE Alu 14 62 -58 6 949 417 39 0 0 chr6 47794064 47794115 -101722922 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 6 949 261 280 0 26 chr6 47794167 47794244 -101722793 - RSINE1 SINE B4 -13 152 78 6 949 993 215 41 5 chr6 47794465 47794661 -101722376 - B3 SINE B2 -7 209 7 6 949 477 319 0 0 chr6 47795071 47795190 -101721847 + PB1D7 SINE Alu 2 120 0 6 949 295 232 73 0 chr6 47795330 47795412 -101721625 - B1_Mm SINE Alu 0 147 60 6 949 2654 107 55 48 chr6 47795631 47796065 -101720972 - RLTR9B LTR ERVK 0 437 1 6 949 618 234 27 20 chr6 47796172 47796320 -101720717 + B1F1 SINE Alu 1 149 0 6 949 1251 27 0 7 chr6 47796368 47796515 -101720522 - B1_Mm SINE Alu 0 147 2 6 949 212 274 0 19 chr6 47796540 47796592 -101720445 + ID4_ SINE ID 12 62 -21 6 949 316 267 36 90 chr6 47796654 47796765 -101720272 + PB1D10 SINE Alu 3 107 -10 6 949 405 281 82 0 chr6 47796903 47797038 -101719999 + B1F1 SINE Alu 2 147 -2 6 949 233 297 0 45 chr6 47797489 47797556 -101719481 + PB1 SINE Alu 62 125 -2 6 949 3600 51 5 2 chr6 47798151 47798586 -101718451 - RLTR10C LTR ERVK 0 436 1 6 949 44824 15 6 3 chr6 47798586 47803600 -101713437 - MMERVK10C-int LTR ERVK 0 7513 1885 6 949 313 175 0 0 chr6 47803605 47803662 -101713375 - MMERVK10C-int LTR ERVK -4261 1145 1089 6 949 661 238 128 47 chr6 47803649 47804035 -101713002 - MMERVK10C-int LTR ERVK -4956 450 314 6 949 927 143 4 177 chr6 47804123 47804394 -101712643 - MMERVK10C-int LTR ERVK -6629 952 729 6 949 2856 50 3 0 chr6 47804392 47804734 -101712303 - MMERVK10C-int LTR ERVK -7238 343 1 6 949 3600 51 5 2 chr6 47804734 47805169 -101711868 - RLTR10C LTR ERVK 0 436 1 6 949 836 195 47 31 chr6 47805399 47805590 -101711447 + B3A SINE B2 2 195 -3 6 949 890 128 54 54 chr6 47805606 47805755 -101711282 + B1_Mur2 SINE Alu 1 149 0 6 949 321 316 0 0 chr6 47805937 47806035 -101711002 + PB1D10 SINE Alu 13 110 -7 6 949 952 121 8 0 chr6 47806317 47806449 -101710588 + B1_Mus1 SINE Alu 1 133 -15 6 949 216 0 0 0 chr6 47806477 47806501 -101710536 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 949 575 278 133 5 chr6 47806501 47806689 -101710348 - ID_B1 SINE B4 -11 213 2 6 949 3422 100 72 13 chr6 47807011 47807537 -101709500 + RLTR31B_Mm LTR ERVK 1 557 0 6 949 1569 68 0 0 chr6 47807717 47807909 -101709128 - B2_Mm1a SINE B2 -1 192 1 6 949 1003 112 28 0 chr6 47807966 47808109 -101708928 + B1_Mus1 SINE Alu 1 147 -1 6 949 426 288 107 19 chr6 47808235 47808451 -101708586 + Lx8 LINE L1 7239 7473 0 6 949 721 188 29 0 chr6 47808494 47808632 -101708405 - B1_Mus2 SINE Alu -5 142 1 6 949 330 293 45 108 chr6 47808632 47808649 -101708388 - B4 SINE B4 -69 221 77 6 949 234 0 0 0 chr6 47808671 47808697 -101708340 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 949 350 172 0 0 chr6 47808742 47808800 -101708237 - RSINE1 SINE B4 -105 60 3 6 949 652 206 24 42 chr6 47809569 47809736 -101707301 - B2_Mm2 SINE B2 -30 165 2 7 949 221 0 35 0 chr6 47810052 47810081 -101706956 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 949 1186 62 0 0 chr6 47810081 47810218 -101706819 - B1_Mm SINE Alu -8 139 3 7 949 767 281 92 75 chr6 47810354 47810403 -101706634 - MER68 LTR ERVL -51 512 466 7 949 3328 41 0 0 chr6 47810403 47810795 -101706242 + L1Md_F2 LINE L1 6189 6580 -2 7 949 767 281 92 75 chr6 47810795 47811134 -101705903 - MER68 LTR ERVL -98 465 117 7 949 227 103 0 0 chr6 47811242 47811271 -101705766 - L1MC4 LINE L1 -1217 6825 6797 7 949 530 258 62 67 chr6 47811285 47811493 -101705544 - MTE2a LTR MaLR 0 379 173 7 949 351 0 0 0 chr6 47811929 47811968 -101705069 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 949 1389 65 16 26 chr6 47812148 47812337 -101704700 - B2_Mm2 SINE B2 -8 187 1 7 949 931 98 98 0 chr6 47812357 47812490 -101704547 - B1_Mus2 SINE Alu 0 147 2 7 949 528 286 0 21 chr6 47812520 47812663 -101704374 + ID_B1 SINE B4 85 224 0 7 949 476 214 11 0 chr6 47812686 47812775 -101704262 + PB1D9 SINE Alu 4 93 -27 7 949 634 192 202 6 chr6 47812866 47813039 -101703998 - B3 SINE B2 -2 214 8 7 949 746 246 0 0 chr6 47813430 47813564 -101703473 - RSINE1 SINE B4 -31 134 1 7 949 217 292 97 0 chr6 47813590 47813662 -101703375 + ID SINE ID 1 79 -145 7 949 358 260 120 16 chr6 47813778 47813903 -101703134 + B1F2 SINE Alu 1 138 -11 7 949 697 248 0 27 chr6 47814128 47814277 -101702760 + RSINE1 SINE B4 4 148 -17 7 949 1528 225 98 45 chr6 47814320 47814859 -101702178 + RLTR12A LTR ERVK 1 568 0 7 949 212 333 56 56 chr6 47815161 47815181 -101701856 + PB1D7 SINE Alu 21 109 -11 7 949 285 275 29 0 chr6 47815181 47815250 -101701787 + ID_B1 SINE B4 143 213 -11 7 949 527 126 48 19 chr6 47817789 47817894 -101699143 - B1_Mur1 SINE Alu 0 149 42 7 949 557 214 36 0 chr6 47818147 47818259 -101698778 - PB1D9 SINE Alu -3 117 2 7 949 841 130 7 52 chr6 47819405 47819559 -101697478 + B1_Mus2 SINE Alu 1 147 0 7 949 180 0 0 0 chr6 47819962 47819982 -101697055 + (T)n Simple_repeat Simple_repeat 1 20 0 7 949 884 237 107 52 chr6 47820615 47820886 -101696151 + B4 SINE B4 1 286 -6 7 949 191 286 53 18 chr6 47820949 47821006 -101696031 + MIR SINE MIR 4 62 -200 7 949 399 321 0 0 chr6 47821172 47821284 -101695753 + PB1D7 SINE Alu 2 113 -7 7 949 758 206 145 11 chr6 47821298 47821484 -101695553 + B3 SINE B2 1 211 -5 7 949 988 219 15 10 chr6 47821669 47821867 -101695170 - B3 SINE B2 -4 212 14 7 949 720 245 7 0 chr6 47821898 47822045 -101694992 - B1_Mur2 SINE Alu -1 148 1 7 949 408 296 57 26 chr6 47822057 47822251 -101694786 - Lx6 LINE L1 -11 7449 7250 7 949 921 35 0 0 chr6 47822269 47822385 -101694652 - B1_Mm SINE Alu -9 138 23 7 949 575 231 141 6 chr6 47822446 47822616 -101694421 - Lx5 LINE L1 -216 6834 6642 7 949 342 288 38 9 chr6 47823018 47823123 -101693914 - PB1D10 SINE Alu -1 116 9 7 949 748 204 224 11 chr6 47823143 47823326 -101693711 - ID_B1 SINE B4 0 224 3 7 949 514 226 26 9 chr6 47823608 47823724 -101693313 + B3A SINE B2 1 118 -80 7 949 430 202 30 10 chr6 47823766 47823866 -101693171 - B1_Mus2 SINE Alu 0 147 46 7 949 546 155 68 0 chr6 47823972 47824075 -101692962 - ID_B1 SINE B4 -13 211 102 7 949 324 0 0 0 chr6 47824176 47824212 -101692825 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 949 1011 47 54 0 chr6 47824212 47824341 -101692696 - B1_Mus2 SINE Alu -11 136 1 7 949 196 289 106 16 chr6 47824612 47824735 -101692302 - MER5B DNA MER1_type -14 164 31 7 949 384 161 0 0 chr6 47825016 47825078 -101691959 - PB1D10 SINE Alu -37 80 19 7 949 266 196 0 0 chr6 47825198 47825249 -101691788 - PB1D9 SINE Alu -61 59 9 7 949 201 39 0 0 chr6 47825871 47825897 -101691140 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 949 1069 66 7 7 chr6 47825897 47826035 -101691002 - B1_Mm SINE Alu -9 138 1 7 949 448 224 94 15 chr6 47826854 47826969 -101690068 - B1_Mur1 SINE Alu 0 117 2 7 949 237 172 0 17 chr6 47827159 47827218 -101689819 + (CAAA)n Simple_repeat Simple_repeat 4 61 0 7 949 195 180 47 0 chr6 47827228 47827273 -101689764 + L2b LINE L2 3320 3361 -14 7 949 34 89 0 0 chr6 47827844 47827934 -101689103 + GC_rich Low_complexity Low_complexity 1 90 0 7 949 253 325 13 19 chr6 47828320 47828474 -101688563 + MER5B DNA MER1_type 5 157 -21 7 949 199 259 0 0 chr6 47829502 47829556 -101687481 + MIRc SINE MIR 112 165 -103 7 949 1089 36 43 0 chr6 47830695 47830835 -101686202 - B1_Mus1 SINE Alu -1 147 2 7 949 237 289 0 12 chr6 47830889 47830973 -101686064 + L2a LINE L2 1273 1355 -2064 7 949 561 239 72 7 chr6 47831089 47831228 -101685809 + B1F1 SINE Alu 2 149 0 7 949 374 240 0 0 chr6 47831232 47831307 -101685730 + B3 SINE B2 3 77 -139 7 949 244 204 0 0 chr6 47831306 47831350 -101685687 + RSINE1 SINE B4 93 136 -29 7 949 494 268 24 0 chr6 47831714 47831841 -101685196 + B1_Mur1 SINE Alu 3 132 -17 7 949 222 91 0 0 chr6 47831841 47831874 -101685163 + (CAT)n Simple_repeat Simple_repeat 2 34 0 7 949 1148 48 7 14 chr6 47832033 47832181 -101684856 - B1_Mus1 SINE Alu 0 148 2 7 949 761 295 212 40 chr6 47832523 47833001 -101684036 + L2a LINE L2 1930 2464 -955 7 949 3053 129 107 24 chr6 47833001 47833541 -101683496 - RMER4B LTR ERVK 0 585 1 7 949 761 295 212 40 chr6 47833541 47833815 -101683222 + L2a LINE L2 2465 2812 -607 7 949 960 212 51 14 chr6 47833825 47834040 -101682997 + ID_B1 SINE B4 2 224 0 7 949 696 259 0 0 chr6 47834144 47834287 -101682750 - RSINE1 SINE B4 -21 144 2 7 949 253 320 150 33 chr6 47834327 47834540 -101682497 + L2a LINE L2 2932 3169 -257 7 949 513 265 76 0 chr6 47834565 47834697 -101682340 + B1F1 SINE Alu 7 148 -1 7 949 1197 74 0 0 chr6 47835273 47835421 -101681616 - B1_Mus1 SINE Alu 0 148 1 7 949 655 210 83 22 chr6 47835425 47835605 -101681432 - B2_Mm2 SINE B2 -4 191 1 7 949 501 288 290 30 chr6 47835853 47836253 -101680784 - MLT1F1 LTR MaLR -2 546 43 7 949 958 269 29 25 chr6 47836270 47836554 -101680483 + B4 SINE B4 3 290 -2 7 949 1139 95 0 0 chr6 47836699 47836846 -101680191 - B1_Mm SINE Alu 0 147 1 7 949 958 145 0 27 chr6 47837062 47837211 -101679826 + B1_Mus1 SINE Alu 4 148 0 7 949 180 200 0 0 chr6 47837212 47837257 -101679780 + GA-rich Low_complexity Low_complexity 2 46 0 7 949 541 199 13 4 chr6 47837620 47837743 -101679294 - B1_Mus1 SINE Alu -2 118 1 7 949 536 270 38 32 chr6 47837872 47838029 -101679008 - RSINE1 SINE B4 -4 161 4 7 949 808 173 12 6 chr6 47838458 47838627 -101678410 + GA-rich Low_complexity Low_complexity 3 172 0 7 949 1021 197 34 0 chr6 47839246 47839454 -101677583 + B3 SINE B2 1 215 -1 7 949 466 214 178 30 chr6 47839662 47839797 -101677240 + RSINE1 SINE B4 11 165 0 7 949 811 189 0 15 chr6 47840970 47841104 -101675933 + B1_Mur1 SINE Alu 12 143 -6 7 950 1011 66 118 7 chr6 47841513 47841666 -101675371 - B2_Mm2 SINE B2 -21 174 5 7 950 240 222 250 25 chr6 47841745 47841865 -101675172 - L1MB7 LINE L1 -40 6144 5998 7 950 608 283 7 0 chr6 47842506 47842644 -101674393 - B1F SINE Alu -6 143 5 7 950 1142 261 50 96 chr6 47843468 47843887 -101673150 - MLT2D LTR ERVL -13 401 2 7 950 352 68 17 0 chr6 47843997 47844056 -101672981 - B2_Mm1t SINE B2 0 193 134 7 950 15035 58 2 7 chr6 47844057 47845971 -101671066 + L1Md_F2 LINE L1 3683 5586 -297 7 950 8232 43 4 1 chr6 47845971 47846952 -101670085 + L1Md_F2 LINE L1 5587 6570 -12 7 950 1239 95 39 0 chr6 47846952 47847131 -101669906 - B2_Mm1t SINE B2 -7 186 1 7 950 315 281 165 18 chr6 47847141 47847311 -101669726 + L1MEg LINE L1 1758 1952 -4132 7 950 640 209 9 0 chr6 47847322 47847437 -101669600 - ID_B1 SINE B4 -6 218 103 7 950 263 308 59 37 chr6 47847437 47847457 -101669580 + YREP_Mm Unknown Unknown 183 320 -1492 7 950 1244 67 50 11 chr6 47847946 47848127 -101668910 - B2_Mm2 SINE B2 -7 188 1 7 950 690 224 105 4 chr6 47848245 47848425 -101668612 - B3A SINE B2 -4 191 1 7 950 651 128 241 35 chr6 47849284 47849377 -101667660 - RMER4A LTR ERVK 0 466 377 7 950 699 46 0 0 chr6 47849377 47849464 -101667573 + (GA)n Simple_repeat Simple_repeat 1 87 0 7 950 651 128 241 35 chr6 47849464 47849515 -101667522 - RMER4A LTR ERVK -90 376 292 7 950 1934 212 19 9 chr6 47849515 47849977 -101667060 - MurERV4-int LTR ERVK -3478 1782 1382 7 950 370 262 6 127 chr6 47849977 47850143 -101666894 + MT2B LTR ERVL 119 264 -337 7 950 964 72 0 8 chr6 47850050 47850177 -101666860 + B1_Mus2 SINE Alu 21 146 -1 7 950 800 190 41 18 chr6 47850184 47850355 -101666682 - MurERV4-int LTR ERVK -5051 209 35 7 950 1079 82 0 0 chr6 47850372 47850507 -101666530 - B1_Mus1 SINE Alu -13 135 1 7 950 2012 159 156 2 chr6 47850547 47850950 -101666087 - RMER4A LTR ERVK 0 466 2 7 950 2823 127 52 33 chr6 47850950 47851464 -101665573 - RLTR11A2 LTR ERVK -3 524 1 7 950 1239 48 0 0 chr6 47851507 47851653 -101665384 + B1_Mm SINE Alu 2 147 0 7 950 752 113 9 0 chr6 47851664 47851779 -101665258 + URR1B DNA MER1_type 104 219 -6 7 950 424 256 91 125 chr6 47852849 47853201 -101663836 - RLTR15 LTR ERVK -19 340 1 7 950 1011 66 71 21 chr6 47853215 47853355 -101663682 + B1_Mus2 SINE Alu 1 147 0 7 950 500 118 122 47 chr6 47854038 47854145 -101662892 - PB1D9 SINE Alu -1 119 5 7 950 673 225 142 0 chr6 47854181 47854350 -101662687 - B3 SINE B2 -13 203 11 8 950 246 128 0 0 chr6 47854765 47854804 -101662233 + (CGG)n Simple_repeat Simple_repeat 2 40 0 8 950 386 306 113 23 chr6 47855858 47856079 -101660958 - MIRc SINE MIR -25 243 3 8 950 290 222 0 0 chr6 47857502 47857547 -101659490 - B3A SINE B2 -114 84 40 8 950 210 170 0 21 chr6 47857565 47857613 -101659424 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 950 27 0 0 0 chr6 47857645 47857672 -101659365 + AT_rich Low_complexity Low_complexity 1 27 0 8 950 227 243 108 0 chr6 47857887 47857961 -101659076 - RMER15 LTR ERVL -69 506 425 8 950 449 315 27 103 chr6 47858285 47858343 -101658694 - B4 SINE B4 -23 269 133 8 950 856 175 0 7 chr6 47858343 47858481 -101658556 - B1_Mur1 SINE Alu -7 142 6 8 950 449 315 27 103 chr6 47858481 47858508 -101658529 - B4 SINE B4 -23 132 64 8 950 733 224 164 68 chr6 47859550 47859813 -101657224 - B4A SINE B4 0 292 5 8 950 719 78 10 0 chr6 47859813 47859916 -101657121 + (TTCC)n Simple_repeat Simple_repeat 3 106 0 8 950 284 304 0 0 chr6 47859936 47860005 -101657032 - ID2 SINE ID -7 76 8 8 950 180 0 0 0 chr6 47860011 47860031 -101657006 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 8 950 717 226 142 10 chr6 47860034 47860231 -101656806 - ID_B1 SINE B4 0 224 2 8 950 821 164 43 0 chr6 47860527 47860667 -101656370 - B1_Mur2 SINE Alu -1 148 3 8 950 1173 84 66 0 chr6 47860712 47860879 -101656158 - B2_Mm1a SINE B2 -14 179 2 8 950 1409 62 10 35 chr6 47861031 47861230 -101655807 - B2_Mm2 SINE B2 0 195 2 8 950 38 22 0 0 chr6 47861232 47861277 -101655760 + AT_rich Low_complexity Low_complexity 1 45 0 8 950 3241 42 0 0 chr6 47861277 47861660 -101655377 - L1_Mus1 LINE L1 0 6567 6185 8 950 250 0 0 0 chr6 47861660 47861689 -101655348 - U3 snRNA snRNA -188 29 1 8 950 377 322 27 0 chr6 47861693 47861842 -101655195 - LTR85c LTR Gypsy? -600 223 71 8 950 300 70 0 0 chr6 47861841 47861884 -101655153 + B1_Mus2 SINE Alu 105 147 0 8 950 219 254 16 48 chr6 47862024 47862086 -101654951 + PB1 SINE Alu 1 60 -67 8 950 1430 64 21 0 chr6 47862213 47862401 -101654636 - B2_Mm1t SINE B2 0 193 2 8 950 537 211 83 0 chr6 47862509 47862643 -101654394 - B1F2 SINE Alu 0 149 1 8 950 318 277 0 0 chr6 47862748 47862813 -101654224 - ID_B1 SINE B4 -8 216 152 8 950 314 98 20 0 chr6 47862881 47862932 -101654105 + (GGGAGA)n Simple_repeat Simple_repeat 1 52 0 8 950 478 239 56 43 chr6 47863053 47863215 -101653822 - RSINE1 SINE B4 0 165 2 8 950 1564 42 0 25 chr6 47863619 47863815 -101653222 - B2_Mm1t SINE B2 -1 192 2 8 950 276 324 9 9 chr6 47863880 47863989 -101653048 + PB1D10 SINE Alu 1 109 -8 8 950 261 0 0 0 chr6 47864081 47864110 -101652927 + (T)n Simple_repeat Simple_repeat 1 29 0 8 950 556 104 387 0 chr6 47864115 47864221 -101652816 + B1_Mus1 SINE Alu 1 147 -1 8 950 298 107 36 0 chr6 47864344 47864400 -101652637 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 950 413 269 0 150 chr6 47864618 47864695 -101652342 + ID_B1 SINE B4 94 223 -1 8 950 414 171 13 0 chr6 47864695 47864771 -101652266 + B1F SINE Alu 73 149 0 8 950 225 0 0 0 chr6 47864811 47864836 -101652201 + (T)n Simple_repeat Simple_repeat 1 25 0 8 950 1126 89 0 0 chr6 47864836 47864982 -101652055 - B1_Mus2 SINE Alu 0 147 2 8 950 703 250 0 20 chr6 47865349 47865500 -101651537 + B1_Mur3 SINE Alu 2 149 0 8 950 307 273 13 0 chr6 47865627 47865704 -101651333 + ID_B1 SINE B4 91 168 -56 8 950 246 32 0 0 chr6 47865966 47865997 -101651040 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 950 2546 62 65 0 chr6 47866218 47866543 -101650494 - ORR1A1 LTR MaLR 0 346 1 8 950 609 182 113 8 chr6 47866554 47866687 -101650350 - B3 SINE B2 -2 214 68 8 950 291 312 50 59 chr6 47866710 47866728 -101650309 - B4 SINE B4 -72 220 103 8 950 602 160 20 10 chr6 47866728 47866829 -101650208 - PB1D9 SINE Alu -1 119 18 8 950 261 0 0 0 chr6 47866830 47866859 -101650178 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 950 522 0 0 0 chr6 47866859 47866917 -101650120 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 950 1346 136 119 4 chr6 47867079 47867315 -101649722 + RLTR25B LTR ERVK 1 263 -765 8 950 3386 153 154 41 chr6 47867771 47868044 -101648993 + RLTR25B LTR ERVK 248 512 -516 8 950 3181 103 135 2 chr6 47868044 47868540 -101648497 - RMER2 LTR ERV1 -1 566 5 8 950 3386 153 154 41 chr6 47868540 47868968 -101648069 + RLTR25B LTR ERVK 513 1028 0 8 950 33 0 0 0 chr6 47869394 47869427 -101647610 + AT_rich Low_complexity Low_complexity 1 33 0 8 950 329 293 0 0 chr6 47869702 47869777 -101647260 - B1F1 SINE Alu -6 143 69 8 950 906 84 114 0 chr6 47869884 47870015 -101647022 - B1_Mus1 SINE Alu 0 148 3 8 950 26 0 0 0 chr6 47870224 47870250 -101646787 + AT_rich Low_complexity Low_complexity 1 26 0 8 950 225 0 0 0 chr6 47870615 47870640 -101646397 + (CGG)n Simple_repeat Simple_repeat 1 25 0 8 950 188 67 33 0 chr6 47871259 47871289 -101645748 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 950 411 276 102 0 chr6 47871629 47871727 -101645310 - PB1D7 SINE Alu -10 110 3 8 950 290 293 268 0 chr6 47871727 47871743 -101645294 - ID_B1 SINE B4 -1 174 68 8 950 261 258 245 11 chr6 47871749 47871843 -101645194 - ID_B1 SINE B4 -9 215 100 8 950 441 250 48 0 chr6 47871883 47871987 -101645050 - B1_Mur2 SINE Alu 0 149 41 8 950 23 0 0 0 chr6 47873128 47873151 -101643886 + AT_rich Low_complexity Low_complexity 1 23 0 8 950 1142 75 0 13 chr6 47873292 47873441 -101643596 + B1_Mus1 SINE Alu 2 148 0 8 950 785 186 9 31 chr6 47873543 47873711 -101643326 - B1_Mur2 SINE Alu 0 149 18 8 950 330 282 205 18 chr6 47873873 47874039 -101642998 + L1MEe LINE L1 2153 2349 -3817 8 950 260 336 81 8 chr6 47874263 47874386 -101642651 + MER3 DNA MER1_type 8 139 -70 8 950 629 260 14 0 chr6 47874386 47874532 -101642505 + B1_Mur2 SINE Alu 1 148 -1 8 950 324 360 82 49 chr6 47874916 47875100 -101641937 + L1MEe LINE L1 4703 4892 -1254 8 950 553 131 21 21 chr6 47875131 47875225 -101641812 - B1_Mur1 SINE Alu -5 144 51 8 950 434 242 76 51 chr6 47875248 47875405 -101641632 - RSINE1 SINE B4 0 165 5 8 950 23 54 0 0 chr6 47875544 47875581 -101641456 + AT_rich Low_complexity Low_complexity 1 37 0 8 950 409 224 366 0 chr6 47875620 47875781 -101641256 - ID_B1 SINE B4 -2 222 3 8 950 549 138 0 0 chr6 47875839 47875919 -101641118 + B2_Mm2 SINE B2 3 82 -113 8 950 249 381 0 10 chr6 47875919 47875937 -101641100 + RSINE1 SINE B4 4 100 -65 8 950 2597 128 5 49 chr6 47875949 47876359 -101640678 - MTC LTR MaLR -29 392 1 8 950 1456 165 112 35 chr6 47877390 47877730 -101639307 - ORR1D1 LTR MaLR -4 370 5 8 950 487 267 34 8 chr6 47877798 47877915 -101639122 + RSINE1 SINE B4 21 140 -25 8 950 44 20 0 0 chr6 47877950 47878001 -101639036 + AT_rich Low_complexity Low_complexity 1 51 0 8 950 1387 83 17 0 chr6 47878059 47878239 -101638798 + B2_Mm2 SINE B2 2 184 -11 8 950 1337 81 37 11 chr6 47878249 47878437 -101638600 + B2_Mm2 SINE B2 3 195 0 8 950 195 211 34 34 chr6 47878621 47878680 -101638357 - L2b LINE L2 -366 3009 2951 8 950 454 243 164 45 chr6 47879269 47879446 -101637591 - B3A SINE B2 0 198 1 8 950 411 289 78 0 chr6 47879452 47879580 -101637457 - B1F SINE Alu -7 142 5 8 950 1503 105 27 0 chr6 47879597 47879816 -101637221 + URR1B DNA MER1_type 1 225 0 8 950 849 180 142 0 chr6 47880019 47880202 -101636835 - B3 SINE B2 -5 211 3 8 950 394 242 120 38 chr6 47880307 47880440 -101636597 - ID_B1 SINE B4 -2 222 79 8 950 800 175 80 0 chr6 47882906 47883043 -101633994 - B1_Mus1 SINE Alu 0 148 1 8 950 3072 31 2 114 chr6 47883201 47883640 -101633397 - RLTR10 LTR ERVK 0 390 1 8 950 180 70 22 44 chr6 47884038 47884083 -101632954 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 8 950 998 124 7 7 chr6 47884083 47884229 -101632808 - B1_Mm SINE Alu 0 147 2 8 950 2055 172 95 22 chr6 47884361 47884842 -101632195 + RMER4B LTR ERVK 16 466 0 8 950 536 257 78 14 chr6 47885016 47885158 -101631879 - RSINE1 SINE B4 -6 159 9 8 950 2245 153 44 20 chr6 47885255 47885661 -101631376 - RMER4A LTR ERVK 0 466 51 8 950 4486 56 33 3 chr6 47885663 47886233 -101630804 + L1_Mus1 LINE L1 5981 6567 0 8 950 1223 41 7 0 chr6 47886238 47886384 -101630653 + B1_Mus2 SINE Alu 1 147 0 8 950 376 265 39 10 chr6 47886775 47886878 -101630159 - PB1D10 SINE Alu -8 109 4 8 950 772 166 36 0 chr6 47886909 47887048 -101629989 - B1_Mm SINE Alu -1 146 3 8 950 375 78 0 0 chr6 47887082 47887133 -101629904 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 950 436 191 9 130 chr6 47887147 47887255 -101629782 - RSINE1 SINE B4 -69 96 2 8 950 752 197 162 6 chr6 47887285 47887464 -101629573 - B3 SINE B2 -6 210 4 8 950 335 359 31 15 chr6 47887531 47887661 -101629376 - B1F SINE Alu -17 132 1 8 950 824 289 5 16 chr6 47887661 47887735 -101629302 - ID SINE ID -144 80 9 8 950 2953 44 25 3 chr6 47887790 47888174 -101628863 - L1Md_F3 LINE L1 0 6584 6196 8 950 323 265 0 14 chr6 47888719 47888788 -101628249 - ID4_ SINE ID -11 72 5 8 950 1072 62 180 0 chr6 47888902 47889063 -101627974 + B2_Mm2 SINE B2 1 190 -5 9 950 381 200 32 96 chr6 47889335 47889383 -101627654 + B1_Mur2 SINE Alu 6 47 -102 9 950 1417 64 11 21 chr6 47889383 47889559 -101627478 + B2_Mm1a SINE B2 1 175 -18 9 950 180 0 0 0 chr6 47889559 47889579 -101627458 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 9 950 1417 64 11 21 chr6 47889579 47889593 -101627444 + B2_Mm1a SINE B2 176 189 -4 9 950 381 200 32 96 chr6 47889593 47889638 -101627399 + B1_Mur2 SINE Alu 48 93 -56 9 950 339 239 98 0 chr6 47889645 47889737 -101627300 + B3A SINE B2 8 108 -90 9 950 22 0 0 0 chr6 47889869 47889891 -101627146 + AT_rich Low_complexity Low_complexity 1 22 0 9 950 524 286 64 0 chr6 47890094 47890234 -101626803 - B1F1 SINE Alu 0 149 1 9 950 1365 70 26 21 chr6 47890330 47890520 -101626517 + B2_Mm1a SINE B2 1 191 -2 9 950 442 303 28 5 chr6 47890527 47890691 -101626346 + B3A SINE B2 27 198 -18 9 950 386 307 102 8 chr6 47890703 47890831 -101626206 + B1F SINE Alu 10 149 0 9 950 1622 143 40 27 chr6 47891007 47891308 -101625729 + ORR1B1 LTR MaLR 84 388 -6 9 950 247 318 53 53 chr6 47891308 47891421 -101625616 - B1F2 SINE Alu -34 115 3 9 950 749 133 280 0 chr6 47891470 47891620 -101625417 - B2_Mm2 SINE B2 -2 193 2 9 950 486 234 53 18 chr6 47891735 47891848 -101625189 + PB1D10 SINE Alu 1 117 0 9 950 279 0 0 0 chr6 47891908 47891939 -101625098 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9 950 587 41 0 0 chr6 47891939 47892012 -101625025 - B1_Mur4 SINE Alu -11 139 67 9 950 253 302 108 45 chr6 47891955 47892066 -101624971 - MT2B LTR ERVL -323 278 161 9 950 414 0 0 0 chr6 47892157 47892203 -101624834 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 950 27 0 0 0 chr6 47892309 47892336 -101624701 + AT_rich Low_complexity Low_complexity 1 27 0 9 950 722 19 361 0 chr6 47892745 47892853 -101624184 - B1_Mus2 SINE Alu 0 147 1 9 950 21 36 0 0 chr6 47893138 47893166 -101623871 + GC_rich Low_complexity Low_complexity 1 28 0 9 950 220 182 22 43 chr6 47893866 47893912 -101623125 + B1_Mus2 SINE Alu 69 113 -34 9 950 690 221 168 5 chr6 47894288 47894484 -101622553 - MER2 DNA MER2_type -59 286 59 9 950 853 115 13 80 chr6 47894505 47894656 -101622381 - B1_Mur4 SINE Alu -9 141 1 9 950 1216 50 0 0 chr6 47894739 47894880 -101622157 + B1_Mus2 SINE Alu 1 141 -6 9 950 378 0 0 0 chr6 47894882 47894924 -101622113 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 9 950 215 299 0 29 chr6 47894943 47895012 -101622025 - B1_Mur1 SINE Alu -13 136 70 9 950 275 0 0 0 chr6 47894982 47895015 -101622022 + B1_Mus2 SINE Alu 109 141 -6 9 950 234 0 0 0 chr6 47895017 47895043 -101621994 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 9 950 753 213 0 29 chr6 47895062 47895202 -101621835 - B1_Mur1 SINE Alu -13 136 1 9 950 378 261 52 137 chr6 47895066 47895208 -101621829 - MT2B LTR ERVL -309 292 158 9 950 318 314 0 11 chr6 47895208 47895295 -101621742 - B1F SINE Alu -21 128 43 9 950 378 261 52 137 chr6 47895295 47895313 -101621724 - MT2B LTR ERVL -309 157 139 9 950 240 264 22 22 chr6 47895842 47895931 -101621106 + MurSatRep1 Unknown Unknown 620 708 -1429 9 950 3997 94 68 19 chr6 47895970 47896547 -101620490 - RLTR1D LTR ERV1 0 605 1 9 950 706 224 101 0 chr6 47897251 47897430 -101619607 + B3 SINE B2 1 197 -19 9 950 834 197 0 21 chr6 47897474 47897619 -101619418 - B1_Mur2 SINE Alu 0 149 8 9 950 1380 85 5 5 chr6 47897655 47897844 -101619193 + B2_Mm1a SINE B2 2 190 -3 9 950 229 293 0 3 chr6 47897889 47897958 -101619079 + B1F SINE Alu 82 149 0 9 950 424 205 91 9 chr6 47898329 47898459 -101618578 + B1F SINE Alu 1 141 -8 9 950 1045 78 43 0 chr6 47898469 47898610 -101618427 + B1_Mus2 SINE Alu 1 147 0 9 950 26 0 0 0 chr6 47898622 47898648 -101618389 + AT_rich Low_complexity Low_complexity 1 26 0 9 950 220 27 26 26 chr6 47900284 47900322 -101616715 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 9 950 1156 70 0 0 chr6 47900335 47900477 -101616560 - B1_Mus1 SINE Alu -6 142 1 9 950 550 254 55 16 chr6 47900757 47900885 -101616152 - B1F1 SINE Alu -5 144 12 9 950 2322 152 23 25 chr6 47904815 47905212 -101611825 + MTC LTR MaLR 18 413 -8 9 950 408 176 181 29 chr6 47905339 47905444 -101611593 + B1_Mus2 SINE Alu 11 131 -16 9 950 953 138 0 0 chr6 47906380 47906518 -101610519 + B1_Mus1 SINE Alu 11 148 0 9 950 658 165 156 8 chr6 47906529 47906657 -101610380 + B1_Mur2 SINE Alu 3 149 0 9 950 707 174 66 0 chr6 47906684 47906805 -101610232 + B3 SINE B2 2 130 -86 9 950 375 236 554 7 chr6 47906820 47906968 -101610069 - Lx7 LINE L1 -345 7351 7123 9 950 812 176 112 0 chr6 47906975 47907145 -101609892 - Lx7 LINE L1 -703 6993 6805 9 950 253 282 12 0 chr6 47907158 47907243 -101609794 - L1_Mur3 LINE L1 -6897 815 730 9 950 1006 179 44 44 chr6 47907766 47907971 -101609066 - B3 SINE B2 -11 205 1 9 950 180 257 71 71 chr6 47908320 47908433 -101608604 + L2c LINE L2 3257 3369 -18 9 950 410 265 94 0 chr6 47908565 47908682 -101608355 - B1F SINE Alu 0 149 22 9 950 1114 261 99 25 chr6 47908893 47909329 -101607708 - RLTR12B LTR ERVK -22 506 39 9 950 385 253 21 21 chr6 47909332 47909461 -101607576 - B3A SINE B2 -54 162 40 9 950 1481 73 16 5 chr6 47909518 47909711 -101607326 + B2_Mm2 SINE B2 1 195 0 9 950 1017 64 40 54 chr6 47909711 47909860 -101607177 + B1_Mm SINE Alu 1 147 0 9 950 564 248 17 0 chr6 47910572 47910689 -101606348 - B1F2 SINE Alu -14 135 17 9 950 520 241 41 108 chr6 47910710 47910905 -101606132 + B3A SINE B2 2 183 -15 9 950 526 263 35 0 chr6 47910997 47911111 -101605926 - RSINE1 SINE B4 -25 140 23 9 950 26 64 0 0 chr6 47911377 47911424 -101605613 + AT_rich Low_complexity Low_complexity 1 47 0 9 950 575 196 18 0 chr6 47911777 47911889 -101605148 + PB1D9 SINE Alu 1 114 -6 9 950 306 148 37 0 chr6 47911928 47911982 -101605055 + B1_Mus2 SINE Alu 92 147 0 9 950 189 312 161 0 chr6 47912076 47912169 -101604868 - MIR SINE MIR -58 204 97 9 950 636 255 48 24 chr6 47914763 47914842 -101602195 + ID SINE ID 2 84 -140 9 950 354 306 54 0 chr6 47914842 47914953 -101602084 + PB1D10 SINE Alu 1 117 0 9 950 369 176 83 10 chr6 47915165 47915269 -101601768 - B1_Mur3 SINE Alu -2 118 16 9 950 268 257 40 0 chr6 47915690 47915764 -101601273 - Kanga1c DNA Tc2 -5 724 648 9 950 883 221 85 0 chr6 47916201 47916400 -101600637 + ID_B1 SINE B4 2 217 -7 9 950 796 181 43 0 chr6 47917092 47917230 -101599807 + B1_Mur1 SINE Alu 3 146 -3 9 950 782 138 85 0 chr6 47917339 47917469 -101599568 - B1_Mur3 SINE Alu 0 149 9 9 950 344 218 96 43 chr6 47917384 47917499 -101599538 - MT2B LTR ERVL -344 257 137 9 950 337 293 86 6 chr6 47917664 47917839 -101599198 + MER65-int LTR ERV1 4527 4715 -156 9 950 940 172 106 16 chr6 47917839 47918028 -101599009 + B3 SINE B2 1 206 -10 9 950 656 156 107 0 chr6 47918055 47918177 -101598860 + B1_Mus2 SINE Alu 13 147 0 9 950 1984 89 93 283 chr6 47918213 47918378 -101598659 + RLTR19A LTR ERVK 1 146 -350 9 950 564 15 0 0 chr6 47918378 47918443 -101598594 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 950 1984 89 93 283 chr6 47918443 47918786 -101598251 + RLTR19A LTR ERVK 147 343 -153 9 950 1698 26 0 0 chr6 47918786 47918976 -101598061 + B2_Mm1t SINE B2 1 190 -3 9 950 1984 89 93 283 chr6 47918976 47919078 -101597959 + RLTR19A LTR ERVK 344 496 0 9 950 862 164 0 0 chr6 47919142 47919270 -101597767 + B1_Mur2 SINE Alu 9 136 -13 9 950 2303 167 11 39 chr6 47919371 47919808 -101597229 + Lx3C LINE L1 6541 6965 -11 9 950 422 274 171 0 chr6 47919896 47920013 -101597024 + ID_B1 SINE B4 83 219 -5 9 950 232 269 0 191 chr6 47920014 47920030 -101597007 + MT2B LTR ERVL 168 198 -403 9 950 621 208 7 84 chr6 47920030 47920050 -101596987 + B1_Mur1 SINE Alu 19 38 -111 9 950 1485 59 16 5 chr6 47920050 47920238 -101596799 + B2_Mm2 SINE B2 2 191 -4 9 950 232 269 0 191 chr6 47920238 47920316 -101596721 + MT2B LTR ERVL 199 260 -341 9 950 621 208 7 84 chr6 47920316 47920359 -101596678 + B1_Mur1 SINE Alu 39 149 0 9 950 275 312 0 0 chr6 47921408 47921488 -101595549 - ID4_ SINE ID 0 83 4 9 950 360 269 60 161 chr6 47921704 47921781 -101595256 + RSINE1 SINE B4 14 79 -86 9 950 2442 86 6 0 chr6 47921781 47922106 -101594931 + ORR1A2 LTR MaLR 1 327 0 9 950 360 269 60 161 chr6 47922106 47922196 -101594841 + RSINE1 SINE B4 80 164 -1 9 950 180 0 0 0 chr6 47922196 47922216 -101594821 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 950 401 288 101 101 chr6 47922326 47922504 -101594533 - B4A SINE B4 -46 178 1 9 950 708 198 287 0 chr6 47922578 47922745 -101594292 - ID_B1 SINE B4 -1 223 9 9 950 850 251 24 42 chr6 47922929 47923141 -101593896 + B3 SINE B2 1 208 -8 9 950 703 171 0 0 chr6 47923166 47923277 -101593760 - B1_Mus1 SINE Alu -2 146 36 9 950 713 130 83 15 chr6 47923358 47923491 -101593546 + B1_Mur2 SINE Alu 1 142 -7 9 950 438 222 0 0 chr6 47923705 47923786 -101593251 - ID4 SINE ID -2 81 1 9 950 275 287 132 57 chr6 47923820 47923979 -101593058 - MER58B DNA MER1_type -68 273 103 9 950 210 37 0 0 chr6 47923988 47924015 -101593022 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 950 573 140 65 0 chr6 47924015 47924108 -101592929 - B1_Mur2 SINE Alu -9 140 42 9 950 756 201 0 0 chr6 47924171 47924525 -101592512 + CT-rich Low_complexity Low_complexity 1 354 0 9 950 263 207 69 0 chr6 47924526 47924584 -101592453 - ID_B1 SINE B4 -77 147 86 9 950 910 221 68 10 chr6 47924664 47924856 -101592181 + B3 SINE B2 2 204 -12 9 950 720 170 41 75 chr6 47924873 47925019 -101592018 + B1_Mus2 SINE Alu 2 142 -5 1 950 283 244 58 160 chr6 47924882 47925038 -101591999 + MT2B LTR ERVL 175 314 -287 1 950 906 301 150 36 chr6 47925520 47925893 -101591144 - MLT1C LTR MaLR -6 461 36 1 950 310 204 190 20 chr6 47925893 47925993 -101591044 - PB1D10 SINE Alu 0 117 1 1 950 906 301 150 36 chr6 47925993 47926033 -101591004 - MLT1C LTR MaLR -432 35 1 1 950 1214 55 0 0 chr6 47926818 47926964 -101590073 + B1_Mm SINE Alu 2 147 0 1 950 228 67 0 0 chr6 47926964 47926994 -101590043 + (A)n Simple_repeat Simple_repeat 1 30 0 1 950 1234 237 156 11 chr6 47928014 47928372 -101588665 + MTC LTR MaLR 1 410 -11 1 950 408 222 81 0 chr6 47928568 47928667 -101588370 + PB1D10 SINE Alu 1 107 -10 1 950 259 139 29 19 chr6 47928685 47928788 -101588249 + A-rich Low_complexity Low_complexity 2 105 0 1 950 628 28 0 0 chr6 47928995 47929067 -101587970 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 1 950 1148 150 13 84 chr6 47929645 47929871 -101587166 + ORR1D1 LTR MaLR 2 211 -163 1 950 568 183 41 57 chr6 47929874 47929996 -101587041 + B1_Mur3 SINE Alu 21 140 -9 1 950 678 185 0 0 chr6 47930009 47930117 -101586920 + ORR1D1 LTR MaLR 198 305 -69 1 950 1014 196 21 5 chr6 47930118 47930308 -101586729 + MTC LTR MaLR 229 421 0 1 950 252 162 68 0 chr6 47930323 47930387 -101586650 + B1F1 SINE Alu 72 147 -2 1 950 467 69 0 4 chr6 47930567 47930635 -101586402 + B2_Mm2 SINE B2 44 109 -107 1 950 190 70 0 85 chr6 47930654 47930676 -101586361 + A-rich Low_complexity Low_complexity 4 24 0 1 950 874 163 7 39 chr6 47930676 47930829 -101586208 + B1_Mur4 SINE Alu 2 149 -1 1 950 190 70 0 85 chr6 47930829 47930853 -101586184 + A-rich Low_complexity Low_complexity 25 46 0 1 950 294 278 14 27 chr6 47930857 47930931 -101586106 + RSINE1 SINE B4 88 160 -5 1 950 453 272 76 17 chr6 47930973 47931145 -101585892 + L1MB3 LINE L1 5900 6081 -102 1 950 324 0 0 0 chr6 47931216 47931252 -101585785 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 950 970 57 0 0 chr6 47931266 47931388 -101585649 - B2_Mm2 SINE B2 -73 122 1 1 950 728 211 152 22 chr6 47931411 47931595 -101585442 - B3 SINE B2 -2 214 7 1 950 23 54 0 0 chr6 47932022 47932059 -101584978 + AT_rich Low_complexity Low_complexity 1 37 0 1 950 234 0 0 0 chr6 47932070 47932096 -101584941 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 950 275 216 20 0 chr6 47932096 47932147 -101584890 + B1_Mus2 SINE Alu 25 76 -71 1 950 371 301 90 66 chr6 47932131 47932298 -101584739 + RMER13A LTR ERVK 688 858 -2 1 950 950 291 70 6 chr6 47932485 47932813 -101584224 - MLT1F1 LTR MaLR -202 367 19 1 950 23 0 0 0 chr6 47932982 47933005 -101584032 + AT_rich Low_complexity Low_complexity 1 23 0 1 950 821 92 8 8 chr6 47933181 47933302 -101583735 - B1_Mus2 SINE Alu 0 147 27 1 950 1148 76 129 0 chr6 47933302 47933473 -101583564 - B2_Mm1t SINE B2 0 193 1 1 950 1161 48 0 40 chr6 47933506 47933657 -101583380 - B1_Mm SINE Alu 0 147 3 1 950 281 310 89 10 chr6 47933706 47933807 -101583230 - RSINE1 SINE B4 -4 161 53 1 950 364 209 166 72 chr6 47933833 47933934 -101583103 + Lx8 LINE L1 6403 6512 -961 1 950 360 0 0 0 chr6 47933934 47933974 -101583063 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 950 364 209 166 72 chr6 47933974 47934011 -101583026 + Lx8 LINE L1 6513 6553 -920 1 950 760 199 50 12 chr6 47934350 47934535 -101582502 - MTD LTR MaLR -3 418 229 1 950 336 195 64 13 chr6 47934503 47934581 -101582456 - MTD LTR MaLR -328 93 12 1 950 284 216 203 0 chr6 47934611 47934685 -101582352 - ID_B1 SINE B4 -58 166 78 1 950 2237 142 134 35 chr6 47935070 47935494 -101581543 - RMER4A LTR ERVK 0 466 1 1 950 441 153 0 14 chr6 47935605 47935678 -101581359 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 1 950 689 238 8 0 chr6 47936319 47936445 -101580592 + RSINE1 SINE B4 15 141 -24 1 950 496 217 121 14 chr6 47936560 47936700 -101580337 - MTD LTR MaLR 0 419 265 1 950 390 204 119 77 chr6 47936700 47936843 -101580194 - B1_Mur3 SINE Alu 0 149 1 1 950 517 210 34 68 chr6 47936882 47937030 -101580007 - MTD LTR MaLR -276 143 1 1 950 491 298 99 14 chr6 47937096 47937307 -101579730 + MLT1J LTR MaLR 229 457 -55 1 950 469 239 25 51 chr6 47937552 47937682 -101579355 + ID_B1 SINE B4 64 186 -38 1 950 288 310 35 0 chr6 47937696 47937783 -101579254 + Lx8 LINE L1 7088 7177 -296 1 950 248 319 0 0 chr6 47937807 47937876 -101579161 + RMER15 LTR ERVL 402 470 -105 1 950 890 144 272 5 chr6 47937909 47938111 -101578926 + RMER4B LTR ERVK 330 585 0 1 950 1582 180 3 28 chr6 47938111 47938402 -101578635 + MurERV4-int LTR ERVK 1 284 -4976 1 950 1985 104 126 28 chr6 47938403 47938766 -101578271 + MTB_Mm LTR MaLR 1 378 -29 1 950 1157 58 0 0 chr6 47938766 47938903 -101578134 - B1_Mus2 SINE Alu -10 137 1 1 950 1711 156 134 105 chr6 47938903 47938948 -101578089 + MTB_Mm LTR MaLR 377 421 0 1 950 1081 174 58 0 chr6 47938948 47939155 -101577882 + MurERV4-int LTR ERVK 281 499 -4761 1 950 952 105 48 27 chr6 47939174 47939321 -101577716 - MurERV4-int LTR ERVK -4339 921 772 1 950 5897 155 24 10 chr6 47939318 47939949 -101577088 + MurERV4-int LTR ERVK 511 1155 -4105 1 950 279 0 0 0 chr6 47939949 47939980 -101577057 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 950 5897 155 24 10 chr6 47939980 47940311 -101576726 + MurERV4-int LTR ERVK 1156 1486 -3774 1 950 771 265 20 15 chr6 47940554 47940753 -101576284 + B3 SINE B2 1 200 -16 1 950 413 275 146 14 chr6 47940775 47940913 -101576124 + MLT1B LTR MaLR 203 359 -31 1 950 1686 144 122 27 chr6 47940913 47941142 -101575895 + ORR1B2 LTR MaLR 1 246 -121 1 950 4044 160 86 86 chr6 47941142 47942043 -101574994 - RMER19B LTR ERVK 0 902 2 1 950 1686 144 122 27 chr6 47942043 47942141 -101574896 + ORR1B2 LTR MaLR 247 359 -8 1 950 183 328 30 0 chr6 47942248 47942315 -101574722 - L2 LINE L2 -2185 1234 1166 1 950 556 219 102 72 chr6 47942326 47942493 -101574544 + B3A SINE B2 1 172 -26 1 950 565 271 32 47 chr6 47942512 47942702 -101574335 + B3A SINE B2 2 188 -10 1 950 911 148 14 0 chr6 47942822 47942964 -101574073 - B1_Mur4 SINE Alu -6 144 1 1 950 299 200 15 30 chr6 47943333 47943400 -101573637 - MamRep605 Unknown Unknown -357 519 454 1 950 527 179 93 36 chr6 47943632 47943771 -101573266 + B1F2 SINE Alu 1 147 -2 1 950 472 179 49 89 chr6 47944115 47944210 -101572827 - MTC LTR MaLR -7 400 304 1 950 3744 105 165 2 chr6 47944210 47944792 -101572245 - RLTR33 LTR ERVK 0 678 2 1 950 472 179 49 89 chr6 47944792 47944819 -101572218 - MTC LTR MaLR -104 303 283 1 950 671 128 26 37 chr6 47944949 47945059 -101571978 - MTC LTR MaLR -87 332 226 1 950 183 42 0 0 chr6 47945059 47945083 -101571954 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 1 950 671 117 26 35 chr6 47945083 47945100 -101571937 - MTC LTR MaLR -196 225 209 1 950 3053 163 21 19 chr6 47945205 47945723 -101571314 + RLTR17 LTR ERVK 174 692 0 1 950 1189 233 203 100 chr6 47945723 47946194 -101570843 - RMER19C LTR ERVK -91 520 1 1 950 373 152 17 0 chr6 47946194 47946251 -101570786 - B3A SINE B2 -137 61 4 1 950 241 190 0 0 chr6 47946648 47946692 -101570345 + ID4 SINE ID 35 78 -74 1 950 1234 61 0 0 chr6 47946746 47946893 -101570144 - B1_Mus1 SINE Alu 0 148 2 1 950 2866 164 44 24 chr6 47946895 47947443 -101569594 - RLTR12A LTR ERVK -9 559 1 1 950 455 283 58 0 chr6 47947509 47947629 -101569408 + ID_B1 SINE B4 98 224 0 1 950 1169 280 47 25 chr6 47947882 47948201 -101568836 - MTE2a LTR MaLR 0 379 54 1 950 367 226 148 19 chr6 47948201 47948309 -101568728 + B3 SINE B2 95 216 0 1 950 409 226 12 0 chr6 47948358 47948442 -101568595 - PB1D10 SINE Alu -21 96 12 1 950 368 325 70 64 chr6 47948362 47948533 -101568504 - ID_B1 SINE B4 -51 173 2 1 950 2021 133 67 22 chr6 47948560 47948921 -101568116 - RLTR14 LTR ERV1 -5 377 1 1 950 239 260 0 39 chr6 47949100 47949152 -101567885 - RSINE1 SINE B4 -114 51 2 1 950 284 48 24 0 chr6 47949184 47949226 -101567811 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 950 788 101 106 23 chr6 47949229 47949361 -101567676 - B1_Mur2 SINE Alu -6 143 1 1 950 694 266 16 102 chr6 47949477 47949730 -101567307 + MTE2a LTR MaLR 1 261 -158 1 950 634 75 168 0 chr6 47949752 47949859 -101567178 + RMER4A LTR ERVK 1 125 -341 1 950 228 238 196 56 chr6 47949859 47949966 -101567071 + RLTR6_Mm LTR ERV1 1 122 -532 1 950 2418 119 207 29 chr6 47949968 47950451 -101566586 + RLTR6_Mm LTR ERV1 37 605 -49 1 950 21742 22 23 0 chr6 47950451 47953241 -101563796 + RLTR6-int LTR ERV1 1 2897 -4881 1 950 29619 13 1 2 chr6 47953233 47956480 -101560557 + RLTR6-int LTR ERV1 4537 7778 0 1 950 228 238 196 56 chr6 47956480 47956587 -101560450 + RLTR6_Mm LTR ERV1 1 122 -532 1 950 2295 122 216 28 chr6 47956589 47957052 -101559985 + RLTR6_Mm LTR ERV1 37 586 -68 1 950 1781 153 70 18 chr6 47957049 47957376 -101559661 + RMER4A LTR ERVK 121 464 -2 1 950 500 248 8 40 chr6 47957388 47957514 -101559523 + MTE2a LTR MaLR 258 379 0 1 950 432 0 0 0 chr6 47957600 47957648 -101559389 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 950 25 0 0 0 chr6 47957673 47957698 -101559339 + AT_rich Low_complexity Low_complexity 1 25 0 1 950 753 151 0 8 chr6 47957698 47957818 -101559219 - B1_Mus1 SINE Alu -19 129 11 1 950 249 271 14 0 chr6 47958003 47958073 -101558964 - tRNA-Cys-TGY tRNA tRNA -1 74 4 1 950 297 75 0 0 chr6 47958165 47958205 -101558832 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 950 726 214 87 16 chr6 47958245 47958430 -101558607 - B3A SINE B2 0 198 1 1 950 213 39 0 0 chr6 47958439 47958465 -101558572 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 1 950 539 191 46 28 chr6 47958471 47958579 -101558458 - PB1D9 SINE Alu -2 118 9 1 950 2767 170 55 30 chr6 47958629 47958733 -101558304 - RLTR20A2 LTR ERVK 0 578 482 1 950 1038 87 0 28 chr6 47958733 47958875 -101558162 + B1_Mus1 SINE Alu 2 139 -9 1 950 459 0 0 0 chr6 47958875 47958926 -101558111 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 950 2767 170 55 30 chr6 47958926 47959384 -101557653 - RLTR20A2 LTR ERVK -97 481 2 1 950 819 91 107 0 chr6 47959412 47959533 -101557504 - B1_Mus1 SINE Alu -13 135 2 1 950 1214 79 5 68 chr6 47959536 47959726 -101557311 - B2_Mm1a SINE B2 0 193 16 1 950 270 250 129 12 chr6 47959709 47959794 -101557243 - PB1D7 SINE Alu -25 95 1 1 950 551 132 129 17 chr6 47960142 47960258 -101556779 - B1F SINE Alu 0 149 21 1 950 504 252 63 0 chr6 47960560 47960671 -101556366 + PB1D7 SINE Alu 1 118 -2 1 950 544 306 7 7 chr6 47961046 47961184 -101555853 + ID_B1 SINE B4 87 224 0 1 950 259 253 201 11 chr6 47961259 47961376 -101555661 + B3 SINE B2 48 188 -10 1 950 288 77 0 0 chr6 47961436 47961475 -101555562 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 950 1026 114 56 66 chr6 47961860 47961899 -101555138 + RMER4A LTR ERVK 1 46 -420 1 950 1207 43 0 0 chr6 47961899 47962040 -101554997 + B1_Mus1 SINE Alu 2 142 -6 1 950 206 32 32 0 chr6 47962042 47962073 -101554964 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 950 1026 114 56 66 chr6 47962073 47962228 -101554809 + RMER4A LTR ERVK 47 196 -270 1 950 201 230 60 145 chr6 47962231 47962348 -101554689 - L2c LINE L2 -76 3311 3205 1 950 204 40 0 0 chr6 47962560 47962585 -101554452 + (T)n Simple_repeat Simple_repeat 1 25 0 1 950 1188 50 0 0 chr6 47962588 47962729 -101554308 - B1_Mm SINE Alu -6 141 1 1 950 271 208 0 77 chr6 47962749 47962827 -101554210 + MLT1C LTR MaLR 56 127 -340 1 950 291 215 30 82 chr6 47962967 47963052 -101553985 + PB1D10 SINE Alu 13 93 -27 1 950 237 33 0 0 chr6 47963085 47963115 -101553922 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 950 594 175 73 32 chr6 47963117 47963241 -101553796 - B1F2 SINE Alu -20 129 1 1 950 216 267 228 57 chr6 47963327 47963450 -101553587 + B3A SINE B2 1 144 -54 1 950 326 242 0 15 chr6 47963457 47963524 -101553513 - B3 SINE B2 -149 67 2 1 950 507 221 131 0 chr6 47963536 47963658 -101553379 - ID_B1 SINE B4 -6 218 81 1 950 785 191 12 0 chr6 47963754 47963922 -101553115 + CT-rich Low_complexity Low_complexity 3 172 0 1 950 539 274 25 9 chr6 47963931 47964083 -101552954 - ID_B1 SINE B4 0 224 73 1 950 708 311 34 98 chr6 47964131 47964509 -101552528 + RLTR18 LTR ERVK 5 358 -258 1 950 778 294 41 17 chr6 47964498 47964809 -101552228 + RLTR18B LTR ERVK 184 613 -3 1 950 452 315 77 61 chr6 47965099 47965410 -101551627 - LTR73 LTR ERV1 -223 349 34 1 950 334 182 35 105 chr6 47965518 47965604 -101551433 + PB1D10 SINE Alu 32 111 -6 1 950 601 247 107 60 chr6 47965616 47965800 -101551237 + B3 SINE B2 35 210 -6 1 950 226 267 0 0 chr6 47965804 47965849 -101551188 + B3A SINE B2 29 73 -125 1 950 311 231 108 63 chr6 47967166 47967277 -101549760 - PB1D10 SINE Alu 0 117 2 1 950 572 239 51 29 chr6 47967325 47967463 -101549574 + B1F2 SINE Alu 9 149 0 1 950 1207 48 7 0 chr6 47968507 47968652 -101548385 + B1_Mus2 SINE Alu 2 147 0 1 950 242 286 117 54 chr6 47968901 47969012 -101548025 - RSINE1 SINE B4 -4 161 44 1 950 244 231 91 15 chr6 47969170 47969236 -101547801 + PB1D10 SINE Alu 3 73 -44 1 950 195 129 0 0 chr6 47969927 47969958 -101547079 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1 950 250 338 116 14 chr6 47970865 47970890 -101546147 + B4 SINE B4 53 167 -125 1 950 288 250 9 103 chr6 47970890 47970997 -101546040 + MT2B LTR ERVL 167 263 -338 1 950 628 250 7 0 chr6 47970901 47971037 -101546000 + B1_Mur1 SINE Alu 13 149 0 1 950 191 61 0 29 chr6 47971039 47971073 -101545964 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 950 269 158 105 0 chr6 47971172 47971229 -101545808 + MIR SINE MIR 81 143 -119 1 950 404 256 0 0 chr6 47971233 47971311 -101545726 + B3 SINE B2 2 79 -137 1 950 1244 34 0 13 chr6 47971478 47971627 -101545410 + B1_Mus1 SINE Alu 2 148 0 1 951 496 266 28 41 chr6 47973469 47973614 -101543423 + B3A SINE B2 2 144 -54 1 951 422 65 16 0 chr6 47973617 47973679 -101543358 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 951 270 95 0 0 chr6 47975755 47975797 -101541240 + (TCC)n Simple_repeat Simple_repeat 2 43 0 1 951 451 186 165 0 chr6 47976669 47976766 -101540271 - PB1D9 SINE Alu -5 115 3 1 951 360 158 284 14 chr6 47976773 47976914 -101540123 - Lx9 LINE L1 0 7644 7466 1 951 606 301 18 94 chr6 47976917 47976991 -101540046 - B3 SINE B2 -8 208 144 1 951 252 0 0 0 chr6 47976991 47977019 -101540018 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 951 685 251 34 11 chr6 47977019 47977168 -101539869 - B3A SINE B2 -51 147 2 1 951 710 169 92 0 chr6 47977423 47977553 -101539484 - B1_Mus2 SINE Alu -1 146 5 1 951 335 60 20 0 chr6 47977557 47977607 -101539430 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 1 951 1239 176 14 0 chr6 47977650 47977871 -101539166 + URR1B DNA MER1_type 2 225 0 1 951 355 281 42 27 chr6 47978031 47978166 -101538871 + B1F1 SINE Alu 1 136 -14 1 951 1214 55 0 0 chr6 47978260 47978406 -101538631 + B1_Mm SINE Alu 2 147 0 1 951 276 337 29 10 chr6 47980319 47980466 -101536571 - L1M5 LINE L1 -2243 5639 5490 1 951 1132 55 14 14 chr6 47980497 47980644 -101536393 + B1_Mus2 SINE Alu 1 147 0 1 951 234 62 0 0 chr6 47980648 47980680 -101536357 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 951 448 235 12 36 chr6 47981146 47981264 -101535773 - PB1D10 SINE Alu -25 124 6 1 951 331 291 139 45 chr6 47981288 47981533 -101535504 + RLTR15 LTR ERVK 24 291 -68 1 951 225 288 85 0 chr6 47981633 47981692 -101535345 - B1F2 SINE Alu -85 64 1 1 951 1196 75 103 0 chr6 47981796 47981970 -101535067 - B2_Mm1t SINE B2 0 193 2 1 951 615 211 105 0 chr6 47982189 47982322 -101534715 - B1_Mus2 SINE Alu 0 147 1 1 951 267 302 102 51 chr6 47982322 47982341 -101534696 - B4 SINE B4 -64 223 64 1 951 456 198 82 36 chr6 47982641 47982751 -101534286 - PB1D9 SINE Alu 0 120 6 1 951 299 250 28 119 chr6 47982677 47982786 -101534251 - MT2B LTR ERVL -363 238 140 1 951 1231 139 87 0 chr6 47982924 47983132 -101533905 + URR1A DNA MER1_type 1 226 0 1 951 2223 124 31 3 chr6 47983361 47983710 -101533327 + RLTR15 LTR ERVK 1 359 0 1 951 211 267 22 0 chr6 47983821 47983866 -101533171 - PB1D7 SINE Alu -60 60 15 1 951 1261 34 0 0 chr6 47984060 47984207 -101532830 + B1_Mus2 SINE Alu 1 147 0 1 951 186 71 0 0 chr6 47984209 47984237 -101532800 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 951 366 198 35 69 chr6 47984237 47984324 -101532713 - ID_B1 SINE B4 -13 211 128 1 951 493 222 37 9 chr6 47984668 47984777 -101532260 + B1_Mus1 SINE Alu 37 148 0 1 951 966 180 58 0 chr6 47984803 47984975 -101532062 + B3 SINE B2 35 216 0 1 951 1997 140 22 30 chr6 47985000 47985362 -101531675 + RLTR15 LTR ERVK 1 359 0 1 951 487 256 69 15 chr6 47985362 47985441 -101531596 + B4 SINE B4 3 88 -204 1 951 244 244 174 22 chr6 47985441 47985533 -101531504 + PB1D10 SINE Alu 2 107 -10 1 951 263 93 23 0 chr6 47985542 47985585 -101531452 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 951 567 299 31 25 chr6 47986130 47986291 -101530746 - RSINE1 SINE B4 0 165 4 1 951 904 144 6 35 chr6 47986570 47986742 -101530295 + L1Md_F2 LINE L1 6416 6582 0 1 951 1257 69 69 0 chr6 47987079 47987252 -101529785 + B2_Mm2 SINE B2 6 190 -5 1 951 232 27 54 0 chr6 47987304 47987341 -101529696 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 951 423 278 35 0 chr6 47987979 47988094 -101528943 + PB1D9 SINE Alu 2 120 0 1 951 545 229 114 0 chr6 47988097 47988228 -101528809 + B1F1 SINE Alu 4 149 0 1 951 213 175 0 0 chr6 47988235 47988275 -101528762 + GA-rich Low_complexity Low_complexity 1 40 0 1 951 329 284 0 39 chr6 47988277 47988354 -101528683 + ID4_ SINE ID 8 81 -2 1 951 268 301 57 13 chr6 47988460 47988618 -101528419 + L1M5 LINE L1 5312 5476 -648 1 951 347 180 247 0 chr6 47988628 47988717 -101528320 + ID_B1 SINE B4 114 224 0 1 951 1031 202 37 33 chr6 47988974 47989189 -101527848 + B3 SINE B2 1 216 0 1 951 29 28 0 0 chr6 47989582 47989618 -101527419 + AT_rich Low_complexity Low_complexity 1 36 0 1 951 758 244 71 43 chr6 47989633 47989843 -101527194 - B3 SINE B2 0 216 1 1 951 780 287 58 13 chr6 47989995 47990221 -101526816 - B4A SINE B4 -56 236 1 1 951 223 246 0 0 chr6 47990284 47990329 -101526708 + T-rich Low_complexity Low_complexity 17 61 0 1 951 1319 14 0 0 chr6 47990329 47990476 -101526561 - B1_Mm SINE Alu 0 147 1 1 951 223 246 0 0 chr6 47990476 47990491 -101526546 + T-rich Low_complexity Low_complexity 2 16 0 1 951 180 250 23 0 chr6 47990658 47990702 -101526335 + MIRb SINE MIR 209 253 -15 1 951 220 62 62 0 chr6 47990675 47990707 -101526330 + L2b LINE L2 3330 3363 -12 1 951 487 308 15 0 chr6 47990952 47991085 -101525952 - B3A SINE B2 -1 197 63 1 951 381 337 71 20 chr6 47991137 47991394 -101525643 + ID_B1 SINE B4 6 291 -1 1 951 402 217 11 44 chr6 47991400 47991583 -101525454 + (CATA)n Simple_repeat Simple_repeat 2 178 0 1 951 242 346 25 13 chr6 47991621 47991700 -101525337 + MT2B LTR ERVL 159 238 -363 1 951 400 212 125 0 chr6 47991639 47991719 -101525318 + PB1D10 SINE Alu 20 109 -8 1 951 765 162 72 14 chr6 47991725 47991863 -101525174 + B1F2 SINE Alu 2 147 -2 1 951 274 309 55 16 chr6 47992379 47992507 -101524530 + MER5A1 DNA MER1_type 34 166 0 1 951 549 333 67 12 chr6 47992762 47993017 -101524020 - MER2 DNA MER2_type -7 338 70 1 951 2203 133 248 17 chr6 47993022 47993497 -101523540 + RMER4B LTR ERVK 1 585 0 1 951 486 275 18 64 chr6 47995944 47996115 -101520922 - MIRb SINE MIR -18 250 88 1 951 28 86 0 0 chr6 47997882 47997952 -101519085 + GC_rich Low_complexity Low_complexity 1 70 0 1 951 36 91 0 0 chr6 47998028 47998127 -101518910 + GC_rich Low_complexity Low_complexity 1 99 0 1 951 198 0 0 0 chr6 47998136 47998158 -101518879 + (CCG)n Simple_repeat Simple_repeat 3 24 0 1 951 186 103 0 0 chr6 47998285 47998314 -101518723 + (CGG)n Simple_repeat Simple_repeat 2 30 0 1 951 25 51 0 0 chr6 47998365 47998404 -101518633 + GC_rich Low_complexity Low_complexity 1 39 0 1 951 208 91 0 43 chr6 47998724 47998770 -101518267 + (CGG)n Simple_repeat Simple_repeat 2 45 0 1 951 224 0 65 0 chr6 48000198 48000229 -101516808 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 951 1122 66 0 0 chr6 48000229 48000366 -101516671 - B1_Mm SINE Alu -10 137 1 2 951 344 164 29 15 chr6 48000434 48000502 -101516535 - ID4_ SINE ID -13 70 2 3 951 293 268 90 82 chr6 48000661 48000783 -101516254 - L1MA5 LINE L1 -39 6261 6139 4 951 225 160 80 0 chr6 48000788 48000838 -101516199 - ID4_ SINE ID -28 55 2 5 951 1221 35 0 0 chr6 48000865 48001007 -101516030 - B1_Mm SINE Alu -5 142 1 6 951 484 100 150 0 chr6 48001008 48001088 -101515949 - 4.5SRNA scRNA scRNA -2 92 1 7 951 378 0 0 0 chr6 48001116 48001158 -101515879 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 951 914 172 82 16 chr6 48001166 48001349 -101515688 - URR1B DNA MER1_type -28 197 3 9 951 1003 194 191 18 chr6 48001364 48001637 -101515400 + MTD LTR MaLR 99 418 -1 1 951 306 250 0 43 chr6 48001638 48001730 -101515307 - PB1D10 SINE Alu -20 97 10 1 951 848 130 7 0 chr6 48001774 48001912 -101515125 - B1_Mus1 SINE Alu -1 147 9 1 951 262 264 25 98 chr6 48001808 48001930 -101515107 - MT2B LTR ERVL -337 264 152 1 951 331 96 0 0 chr6 48001968 48002020 -101515017 + B3A SINE B2 1 52 -146 1 951 464 252 8 42 chr6 48002056 48002176 -101514861 + RSINE1 SINE B4 29 144 -21 1 951 329 188 25 0 chr6 48002233 48002313 -101514724 + MER2 DNA MER2_type 106 187 -158 1 951 342 0 0 0 chr6 48002348 48002386 -101514651 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 951 393 186 115 11 chr6 48002654 48002741 -101514296 + 5S rRNA rRNA 1 96 -25 1 951 203 0 37 0 chr6 48002805 48002832 -101514205 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 951 514 214 119 0 chr6 48002833 48002959 -101514078 - B1_Mur2 SINE Alu -8 141 1 2 951 297 304 0 0 chr6 48002980 48003049 -101513988 + tRNA-Ala-GCY_ tRNA tRNA 3 71 -4 2 951 26 30 0 0 chr6 48003054 48003087 -101513950 + AT_rich Low_complexity Low_complexity 1 33 0 2 951 236 253 217 11 chr6 48003288 48003380 -101513657 - L1M5 LINE L1 -3572 2574 2464 2 951 261 190 342 0 chr6 48003519 48003598 -101513439 - B1_Mur4 SINE Alu -43 107 2 2 951 242 160 0 20 chr6 48003616 48003667 -101513370 + CT-rich Low_complexity Low_complexity 3 52 0 2 951 356 248 48 0 chr6 48003688 48003793 -101513244 - PB1D9 SINE Alu -6 114 5 2 951 758 207 0 21 chr6 48003913 48004056 -101512981 + B1F2 SINE Alu 3 142 -7 2 951 420 319 9 0 chr6 48004118 48004234 -101512803 - ID_B1 SINE B4 -5 219 103 2 951 224 346 38 19 chr6 48004148 48004254 -101512783 - B1_Mus1 SINE Alu -38 110 3 2 951 655 230 64 46 chr6 48004375 48004576 -101512461 - B3A SINE B2 -11 205 2 3 951 546 16 0 0 chr6 48004601 48004664 -101512373 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 3 951 1063 60 60 0 chr6 48004674 48004823 -101512214 - B2_Mm2 SINE B2 -37 158 1 3 951 496 258 0 0 chr6 48004926 48005058 -101511979 + MER2 DNA MER2_type 123 254 -91 1 951 1889 141 90 87 chr6 48005183 48005595 -101511442 + MTC LTR MaLR 1 413 -8 3 951 547 269 7 20 chr6 48005641 48005789 -101511248 - B1_Mur1 SINE Alu -3 146 1 3 951 197 185 0 36 chr6 48005871 48005927 -101511110 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 3 951 1767 268 93 27 chr6 48006054 48006603 -101510434 - Lx8 LINE L1 -181 7292 6708 3 951 389 106 0 57 chr6 48006664 48006734 -101510303 - B1_Mur4 SINE Alu -84 66 1 3 951 493 307 47 2 chr6 48006735 48006911 -101510126 - Lx8 LINE L1 -866 6778 6549 3 951 654 229 192 70 chr6 48006984 48007312 -101509725 - RLTR9A LTR ERVK 0 368 1 3 951 198 0 0 0 chr6 48008113 48008135 -101508902 + (TTG)n Simple_repeat Simple_repeat 2 23 0 3 951 7334 172 46 6 chr6 48008162 48009575 -101507462 - Lx5 LINE L1 -42 7008 5526 4 951 417 86 0 0 chr6 48009758 48009816 -101507221 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 4 951 806 269 35 0 chr6 48009929 48010126 -101506911 - B3 SINE B2 -9 207 4 4 951 455 248 67 15 chr6 48010141 48010276 -101506761 - B1F SINE Alu -6 143 2 4 951 654 294 27 16 chr6 48011009 48011196 -101505841 + B3A SINE B2 1 189 -9 4 951 535 221 81 0 chr6 48011223 48011359 -101505678 - B1F2 SINE Alu -2 147 1 4 951 741 264 22 6 chr6 48011784 48011963 -101505074 - B3A SINE B2 -16 182 1 4 951 236 286 0 0 chr6 48014260 48014316 -101502721 + C-rich Low_complexity Low_complexity 20 75 0 4 951 435 196 126 40 chr6 48015840 48016015 -101501022 + RLTR15 LTR ERVK 38 227 -132 4 951 335 292 34 28 chr6 48016032 48016208 -101500829 + RLTR15 LTR ERVK 165 341 -18 4 951 180 0 0 0 chr6 48016216 48016236 -101500801 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 5 951 982 213 64 0 chr6 48016852 48017054 -101499983 - B3 SINE B2 -1 215 1 5 951 886 241 24 10 chr6 48017662 48017871 -101499166 + ID_B1 SINE B4 1 212 -12 5 951 186 43 0 0 chr6 48018135 48018158 -101498879 + (T)n Simple_repeat Simple_repeat 1 23 0 5 951 943 121 0 26 chr6 48018161 48018314 -101498723 - B1_Mur4 SINE Alu 0 150 2 5 951 1029 187 43 24 chr6 48018560 48018768 -101498269 + B3 SINE B2 1 212 -4 5 951 491 114 0 12 chr6 48019048 48019128 -101497909 - B1_Mur4 SINE Alu -1 149 71 5 951 277 262 37 9 chr6 48019165 48019273 -101497764 + PB1 SINE Alu 15 125 -2 5 951 233 182 218 0 chr6 48019296 48019351 -101497686 + ID4_ SINE ID 3 69 -14 5 951 628 295 145 11 chr6 48019566 48020042 -101496995 + L1M5 LINE L1 3372 3911 -2235 5 951 252 0 0 0 chr6 48020956 48020984 -101496053 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 951 410 177 0 30 chr6 48021024 48021123 -101495914 + Lx2B LINE L1 6902 6997 -3 6 951 309 326 110 34 chr6 48021383 48021584 -101495453 + L1M5 LINE L1 4977 5185 -961 5 951 292 206 40 27 chr6 48021584 48021659 -101495378 + ID4 SINE ID 5 80 -3 6 951 309 326 110 34 chr6 48021659 48021784 -101495253 + L1M5 LINE L1 5186 5327 -819 5 951 984 61 61 8 chr6 48022114 48022246 -101494791 + B1_Mus1 SINE Alu 1 139 -9 6 951 413 0 39 0 chr6 48022246 48022298 -101494739 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 951 243 0 0 0 chr6 48022298 48022325 -101494712 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 6 951 2459 117 78 99 chr6 48022832 48023307 -101493730 - RMER4A LTR ERVK 0 466 2 6 951 425 105 0 26 chr6 48023406 48023477 -101493560 + RMER19A LTR ERVK 1 69 -668 6 951 1547 244 45 41 chr6 48023477 48023961 -101493076 + RLTR16 LTR ERVK 1 486 -19 6 951 2688 146 180 14 chr6 48024075 48024652 -101492385 + RMER19A LTR ERVK 65 737 0 6 951 285 280 0 51 chr6 48024652 48024731 -101492306 - ID2 SINE ID -6 77 3 7 951 316 270 140 0 chr6 48024731 48024831 -101492206 - PB1D9 SINE Alu -1 119 6 7 951 631 242 24 91 chr6 48024915 48025124 -101491913 - B3A SINE B2 -3 195 1 7 951 791 125 63 49 chr6 48025136 48025279 -101491758 - B1_Mur1 SINE Alu -1 148 4 7 951 211 273 0 0 chr6 48025312 48025356 -101491681 + B1F2 SINE Alu 1 44 -105 7 951 269 317 48 7 chr6 48026450 48026596 -101490441 + L1M5 LINE L1 4533 4684 -1462 7 951 290 227 0 26 chr6 48026855 48026932 -101490105 - RSINE1 SINE B4 -2 163 89 7 951 229 289 139 8 chr6 48026956 48027078 -101489959 - B1_Mm SINE Alu -7 140 3 7 951 415 219 52 0 chr6 48026983 48027079 -101489958 - ID_B1 SINE B4 -41 183 83 7 951 26 0 0 0 chr6 48027303 48027329 -101489708 + AT_rich Low_complexity Low_complexity 1 26 0 7 951 875 240 24 14 chr6 48027332 48027539 -101489498 + B3 SINE B2 5 213 -3 8 951 248 173 115 0 chr6 48027639 48027691 -101489346 + L1MC LINE L1 5411 5468 -2414 8 951 400 287 17 9 chr6 48027909 48028025 -101489012 - B1F SINE Alu -5 144 28 8 951 213 310 141 12 chr6 48028058 48028143 -101488894 - PB1D10 SINE Alu -9 108 13 8 951 366 167 0 0 chr6 48028488 48028548 -101488489 + B2_Mm2 SINE B2 1 60 -135 8 951 285 98 0 0 chr6 48028773 48028814 -101488223 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 951 267 318 12 12 chr6 48029246 48029332 -101487705 + MLT1A LTR MaLR 77 162 -212 8 951 1566 36 15 30 chr6 48029773 48029971 -101487066 + B2_Mm2 SINE B2 1 195 0 8 951 459 233 52 0 chr6 48030023 48030139 -101486898 - B1_Mur4 SINE Alu -27 123 2 8 951 1043 213 24 5 chr6 48030142 48030354 -101486683 - B3 SINE B2 0 216 1 8 951 272 286 86 0 chr6 48030398 48030468 -101486569 - MER58C DNA MER1_type -139 76 1 9 951 387 0 0 0 chr6 48030890 48030933 -101486104 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 951 369 285 79 21 chr6 48034244 48034384 -101482653 - B1F1 SINE Alu 0 149 2 9 951 243 0 0 0 chr6 48034766 48034793 -101482244 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 9 951 224 319 45 23 chr6 48035764 48035897 -101481140 + MIR SINE MIR 84 227 -41 9 951 404 252 165 0 chr6 48037084 48037199 -101479838 + B3A SINE B2 4 137 -61 9 951 307 146 91 0 chr6 48037786 48037841 -101479196 + MTC LTR MaLR 1 60 -361 9 951 5118 41 31 9 chr6 48037842 48038479 -101478558 - L1Md_F2 LINE L1 -2 6580 5930 9 951 654 200 41 36 chr6 48038484 48038680 -101478357 + MTC LTR MaLR 200 413 -8 9 951 243 0 0 0 chr6 48039460 48039487 -101477550 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 951 1220 207 9 0 chr6 48039493 48039706 -101477331 + B3 SINE B2 2 216 0 9 951 442 250 34 8 chr6 48039824 48039941 -101477096 + RCHARR1 DNA MER1_type 2 121 -853 1 951 233 229 152 30 chr6 48039948 48040047 -101476990 + MIR SINE MIR 33 143 -65 1 951 359 217 107 54 chr6 48040088 48040200 -101476837 - PB1D9 SINE Alu 0 120 3 1 951 515 178 11 0 chr6 48040304 48040394 -101476643 - B3 SINE B2 -3 213 123 1 951 353 265 10 0 chr6 48040414 48040512 -101476525 - RCHARR1 DNA MER1_type -839 135 37 1 951 426 221 0 34 chr6 48040635 48040724 -101476313 - PB1D10 SINE Alu -29 88 3 1 951 252 0 0 0 chr6 48040906 48040934 -101476103 + (T)n Simple_repeat Simple_repeat 1 28 0 1 951 936 225 50 10 chr6 48041330 48041532 -101475505 + B3 SINE B2 4 213 -3 1 951 246 212 30 0 chr6 48041884 48041983 -101475054 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 951 611 113 0 19 chr6 48041993 48042101 -101474936 + (TATG)n Simple_repeat Simple_repeat 2 107 0 1 951 478 240 175 8 chr6 48042106 48042232 -101474805 - B3 SINE B2 -68 148 2 1 951 233 324 57 0 chr6 48042398 48042503 -101474534 - ORR1E LTR MaLR -245 114 4 1 951 947 255 5 0 chr6 48042588 48042788 -101474249 + B3 SINE B2 9 209 -7 1 951 262 191 46 30 chr6 48042808 48042874 -101474163 + MYSERV16_I-int LTR ERVK 2267 2326 0 1 951 2787 121 25 25 chr6 48042874 48043315 -101473722 + BGLII_B LTR ERVK 1 441 0 1 951 716 258 50 10 chr6 48043457 48043657 -101473380 + B3 SINE B2 5 212 -4 1 951 3537 223 80 56 chr6 48043693 48045039 -101471998 - RMER1B Other Other -5 1061 37 1 951 479 281 36 22 chr6 48045132 48045270 -101471767 + RSINE1 SINE B4 6 145 -20 1 951 240 86 0 0 chr6 48045311 48045346 -101471691 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1 951 589 176 48 56 chr6 48045429 48045555 -101471482 + B3 SINE B2 2 126 -90 1 951 252 59 0 0 chr6 48045560 48045594 -101471443 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 951 408 244 261 22 chr6 48046388 48046614 -101470423 + RMER15 LTR ERVL 294 573 -2 1 951 742 208 195 6 chr6 48047354 48047528 -101469509 + B3 SINE B2 1 207 -9 1 951 703 255 6 6 chr6 48047994 48048156 -101468881 - RSINE1 SINE B4 -2 163 2 1 951 368 334 82 33 chr6 48048170 48048535 -101468502 + L1M5 LINE L1 2480 2862 -3284 1 951 229 212 104 15 chr6 48048535 48048602 -101468435 + B3 SINE B2 1 73 -143 1 951 3178 182 39 39 chr6 48048662 48049469 -101467568 - RMER13B LTR ERVK -11 897 1 1 951 307 273 0 0 chr6 48049820 48049897 -101467140 + ID_B1 SINE B4 133 209 -15 1 951 285 288 88 119 chr6 48049912 48049971 -101467066 + L1M5 LINE L1 3428 3490 -2656 1 951 1146 75 0 7 chr6 48049971 48050119 -101466918 + B1_Mus2 SINE Alu 1 147 0 1 951 285 288 88 119 chr6 48050119 48050205 -101466832 + L1M5 LINE L1 3491 3562 -2584 1 951 225 0 0 0 chr6 48050205 48050230 -101466807 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 951 285 288 88 119 chr6 48050230 48050343 -101466694 + L1M5 LINE L1 3563 3678 -2468 1 951 412 239 101 0 chr6 48050407 48050545 -101466492 + L1M3 LINE L1 3780 3931 -2209 1 951 321 312 65 0 chr6 48050547 48050640 -101466397 + B3 SINE B2 1 99 -117 1 951 496 152 0 0 chr6 48050616 48050695 -101466342 - PB1D9 SINE Alu -41 79 1 1 951 343 256 0 44 chr6 48050695 48050706 -101466331 - B4 SINE B4 -128 164 79 1 951 323 176 0 93 chr6 48050756 48050831 -101466206 + B1_Mur3 SINE Alu 1 68 -81 1 951 438 20 0 0 chr6 48050898 48050949 -101466088 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 951 742 250 33 50 chr6 48050982 48051163 -101465874 + B3A SINE B2 5 182 -16 1 951 264 130 0 0 chr6 48051163 48051209 -101465828 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 951 1589 130 0 22 chr6 48051333 48051601 -101465436 + ORR1A4 LTR MaLR 3 264 -65 1 951 287 231 25 0 chr6 48051616 48051632 -101465405 + ORR1B1-int LTR MaLR 631 649 -860 1 951 884 26 0 0 chr6 48051632 48051746 -101465291 + B1_Mm SINE Alu 3 116 -31 1 951 294 29 0 0 chr6 48051848 48051883 -101465154 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1 951 600 244 37 7 chr6 48051883 48052008 -101465029 - B1_Mur2 SINE Alu -12 137 8 1 951 549 44 0 0 chr6 48052105 48052173 -101464864 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 951 349 301 79 26 chr6 48052205 48052434 -101464603 - RLTR15 LTR ERVK 0 359 119 1 951 473 274 53 44 chr6 48052419 48052644 -101464393 - RLTR15 LTR ERVK -132 227 1 1 951 26 0 0 0 chr6 48052735 48052761 -101464276 + AT_rich Low_complexity Low_complexity 1 26 0 1 951 753 301 63 19 chr6 48052844 48053159 -101463878 - LTR33C LTR ERVL -20 609 281 1 951 2212 221 101 77 chr6 48053228 48054043 -101462994 + RMER19B LTR ERVK 1 834 -68 1 951 750 161 0 0 chr6 48054067 48054241 -101462796 + GA-rich Low_complexity Low_complexity 2 175 0 1 951 524 326 43 58 chr6 48054247 48054592 -101462445 + L1M5 LINE L1 2437 2776 -3370 1 951 2990 224 64 3 chr6 48054670 48055311 -101461726 - RMER1C Other Other 0 1342 663 1 951 369 62 0 0 chr6 48055313 48055361 -101461676 + (CAG)n Simple_repeat Simple_repeat 1 48 0 1 951 302 239 18 27 chr6 48055460 48055572 -101461465 + (TG)n Simple_repeat Simple_repeat 1 111 0 1 951 1587 116 4 0 chr6 48055776 48056001 -101461036 - URR1A DNA MER1_type 0 226 1 1 951 2816 143 81 9 chr6 48056027 48056557 -101460480 - RLTR20D LTR ERVK 0 568 1 1 951 331 136 163 10 chr6 48056592 48056694 -101460343 - B1_Mur2 SINE Alu -3 146 35 1 951 1171 48 7 0 chr6 48056782 48056929 -101460108 + B1_Mus1 SINE Alu 1 148 0 1 951 712 300 0 0 chr6 48056961 48057121 -101459916 + RSINE1 SINE B4 6 165 0 1 951 1902 221 41 8 chr6 48057254 48057647 -101459390 - Lx7 LINE L1 -620 7076 6671 1 951 1033 239 68 18 chr6 48057651 48057932 -101459105 + Lx7 LINE L1 7088 7382 -314 1 951 329 239 11 0 chr6 48058102 48058194 -101458843 + L1M5 LINE L1 3115 3207 -2939 1 951 446 261 112 0 chr6 48058194 48058328 -101458709 + B1F SINE Alu 1 149 0 1 951 294 164 0 0 chr6 48058328 48058383 -101458654 + A-rich Low_complexity Low_complexity 1 55 0 1 951 31 26 0 0 chr6 48058713 48058751 -101458286 + AT_rich Low_complexity Low_complexity 1 38 0 1 951 4020 190 31 158 chr6 48058838 48060277 -101456760 + RMER1B Other Other 38 1064 -2 1 951 279 93 0 0 chr6 48060799 48060842 -101456195 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 1 951 239 0 0 31 chr6 48061112 48061144 -101455893 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 951 298 303 74 56 chr6 48061423 48061654 -101455383 + HAL1 LINE L1 1595 1829 -678 1 951 23 33 0 0 chr6 48062264 48062294 -101454743 + AT_rich Low_complexity Low_complexity 1 30 0 1 951 556 231 6 64 chr6 48062545 48062702 -101454335 - B1_Mur1 SINE Alu -1 148 1 1 951 3615 134 145 7 chr6 48062947 48063699 -101453338 - MTC-int LTR MaLR -401 857 2 1 951 1709 136 119 7 chr6 48063702 48064012 -101453025 - MTC LTR MaLR -8 413 69 1 951 1144 94 0 0 chr6 48064066 48064225 -101452812 + B2_Mm2 SINE B2 2 160 -35 1 951 180 0 0 0 chr6 48064225 48064245 -101452792 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 1 951 594 75 0 0 chr6 48064264 48064344 -101452693 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 1 951 1931 145 40 0 chr6 48064351 48064675 -101452362 + RMER15 LTR ERVL 239 575 0 1 951 1155 151 57 22 chr6 48064900 48065091 -101451946 - ORR1C2 LTR MaLR 0 384 183 1 951 299 25 0 24 chr6 48065091 48065132 -101451905 + (AGGGGG)n Simple_repeat Simple_repeat 4 43 0 1 951 1155 151 57 22 chr6 48065132 48065170 -101451867 - ORR1C2 LTR MaLR -202 182 147 1 951 375 118 13 0 chr6 48065201 48065272 -101451765 - B2_Mm2 SINE B2 -95 121 47 1 951 1343 62 11 6 chr6 48065304 48065481 -101451556 - B2_Mm1t SINE B2 -14 179 2 1 951 1017 146 0 12 chr6 48065481 48065646 -101451391 - ORR1C2 LTR MaLR -220 164 1 1 951 5938 182 128 34 chr6 48065646 48065756 -101451281 - ORR1C2-int LTR MaLR 0 1509 1392 1 951 968 152 0 7 chr6 48065756 48065902 -101451135 + B1_Mus1 SINE Alu 2 146 -2 1 951 5938 182 128 34 chr6 48065902 48067170 -101449867 - ORR1C2-int LTR MaLR -118 1391 1 1 951 1897 146 76 30 chr6 48067174 48067541 -101449496 - ORR1C2 LTR MaLR 0 384 1 1 951 400 259 95 86 chr6 48067806 48068053 -101448984 + RSINE1 SINE B4 54 274 -18 1 951 2241 184 17 12 chr6 48068101 48068518 -101448519 - MTD LTR MaLR 0 419 1 1 951 1151 102 11 0 chr6 48069259 48069435 -101447602 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 1 951 386 278 17 25 chr6 48069757 48069875 -101447162 + RSINE1 SINE B4 2 118 -47 1 951 403 192 105 31 chr6 48070058 48070192 -101446845 + PB1D9 SINE Alu 9 147 -3 1 951 368 154 0 15 chr6 48070216 48070282 -101446755 + B4 SINE B4 7 71 -221 1 951 323 193 191 9 chr6 48070712 48070822 -101446215 - B3 SINE B2 -4 212 83 1 951 1106 72 7 0 chr6 48070841 48070994 -101446043 + (TTTTC)n Simple_repeat Simple_repeat 2 155 0 1 951 1376 78 6 16 chr6 48071013 48071196 -101445841 - B2_Mm1a SINE B2 -9 184 4 1 951 267 170 0 0 chr6 48071395 48071442 -101445595 - B3A SINE B2 -142 56 10 1 951 349 169 14 0 chr6 48072181 48072252 -101444785 + B4A SINE B4 1 72 -220 1 951 378 0 0 0 chr6 48072400 48072442 -101444595 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 951 966 119 25 0 chr6 48072491 48072650 -101444387 - ORR1A2 LTR MaLR -164 163 1 1 951 4159 112 19 47 chr6 48072656 48073444 -101443593 + RMER17A LTR ERVK 1 751 0 1 951 428 125 14 27 chr6 48073462 48073536 -101443501 + tRNA-Cys-TGY tRNA tRNA 1 73 -2 1 951 188 305 51 0 chr6 48073850 48073909 -101443128 - MER5A DNA MER1_type -56 133 72 1 951 1210 85 0 6 chr6 48074066 48074243 -101442794 + B2_Mm2 SINE B2 1 176 -19 1 951 3478 25 5 0 chr6 48074285 48074679 -101442358 + MTA_Mm LTR MaLR 1 396 0 1 951 1251 238 30 78 chr6 48075225 48075621 -101441416 + MTEb LTR MaLR 1 377 -2 1 951 387 0 0 0 chr6 48076322 48076365 -101440672 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 951 297 0 0 0 chr6 48076365 48076397 -101440640 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 951 626 267 90 6 chr6 48076406 48076572 -101440465 + B3A SINE B2 1 180 -18 1 951 480 318 72 34 chr6 48076607 48077050 -101439987 + HAL1 LINE L1 1245 1704 -803 1 951 514 211 160 68 chr6 48077383 48077568 -101439469 - MTD LTR MaLR -5 374 196 1 951 1270 256 154 64 chr6 48077568 48078023 -101439014 - Lx6 LINE L1 -4 7456 6961 1 951 290 236 43 33 chr6 48078150 48078242 -101438795 - MTD LTR MaLR -326 93 1 1 951 255 261 28 28 chr6 48079165 48079236 -101437801 + tRNA-Cys-TGY tRNA tRNA 2 72 -3 2 951 1745 160 20 43 chr6 48080061 48080509 -101436528 - RMER17C LTR ERVK -519 439 16 2 951 2265 53 21 0 chr6 48080897 48081180 -101435857 - L1Md_A LINE L1 -2 6580 6292 2 951 266 296 90 48 chr6 48081384 48081572 -101435465 - L2 LINE L2 -873 2546 2351 2 951 296 282 97 22 chr6 48081580 48081714 -101435323 - MLT1A1 LTR MaLR -9 399 256 2 951 1090 218 65 34 chr6 48081717 48082068 -101434969 - L1_Rod LINE L1 -6523 649 288 2 951 561 212 0 120 chr6 48082085 48082177 -101434860 + MT2A LTR ERVL 1 88 -445 2 951 777 202 208 27 chr6 48082177 48082360 -101434677 - B3 SINE B2 0 216 1 2 951 561 212 0 120 chr6 48082360 48082417 -101434620 + MT2A LTR ERVL 89 132 -401 2 951 1021 171 45 14 chr6 48082652 48082872 -101434165 - RLTR28 LTR ERVL -13 511 285 2 951 848 141 24 25 chr6 48082881 48083090 -101433947 + B2_Mm2 SINE B2 1 208 -8 2 951 1570 130 63 0 chr6 48083089 48083359 -101433678 - RLTR28 LTR ERVL -237 287 1 2 951 653 14 0 0 chr6 48083935 48084007 -101433030 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 2 951 25 0 0 0 chr6 48084212 48084237 -101432800 + AT_rich Low_complexity Low_complexity 1 25 0 2 951 931 239 90 145 chr6 48084259 48084660 -101432377 + MTE2a LTR MaLR 1 379 0 2 951 243 0 0 0 chr6 48085907 48085934 -101431103 + (T)n Simple_repeat Simple_repeat 1 27 0 2 951 846 269 0 9 chr6 48085934 48086148 -101430889 - B3 SINE B2 0 216 5 2 951 272 291 58 146 chr6 48087217 48087511 -101429526 + B4A SINE B4 12 279 -13 2 951 347 42 0 20 chr6 48087562 48087611 -101429426 + HAL1-3A_ME LINE L1 1968 2015 -843 2 951 423 0 0 0 chr6 48087652 48087699 -101429338 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 951 1054 105 14 0 chr6 48088260 48088403 -101428634 + B1_Mus2 SINE Alu 1 145 -2 2 951 967 250 70 16 chr6 48088620 48088876 -101428161 - Lx8 LINE L1 -882 6591 6322 2 951 403 319 29 7 chr6 48088887 48089023 -101428014 + Lx8 LINE L1 6198 6336 -1137 2 951 642 28 0 0 chr6 48089508 48089580 -101427457 - tRNA-Cys-TGY tRNA tRNA -3 72 1 2 951 588 82 0 0 chr6 48090481 48090554 -101426483 - tRNA-Cys-TGY tRNA tRNA -2 73 1 2 951 314 301 165 30 chr6 48090823 48091059 -101425978 + Lx8 LINE L1 7199 7466 -7 2 951 300 242 0 0 chr6 48091076 48091138 -101425899 - Lx7 LINE L1 -1290 6406 6345 2 951 645 80 0 0 chr6 48091236 48091324 -101425713 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 2 951 1050 154 288 0 chr6 48091324 48091564 -101425473 - Lx4A LINE L1 -6 7052 6744 2 951 375 267 19 28 chr6 48091574 48091682 -101425355 - ORR1D1-int LTR MaLR -1262 108 2 2 951 1208 238 41 32 chr6 48091751 48092090 -101424947 - ORR1D1 LTR MaLR -32 342 1 2 951 252 284 76 58 chr6 48092122 48092399 -101424638 + HAL1 LINE L1 1600 1881 -626 2 951 642 28 0 0 chr6 48093354 48093426 -101423611 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 2 951 530 63 13 0 chr6 48093538 48093617 -101423420 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 951 882 267 75 16 chr6 48094393 48094648 -101422389 - Lx8 LINE L1 -882 6591 6322 2 951 427 309 8 8 chr6 48094659 48094786 -101422251 + Lx8 LINE L1 6198 6324 -1149 2 951 653 14 0 0 chr6 48094926 48094998 -101422039 - tRNA-Cys-TGY tRNA tRNA -3 72 1 2 951 261 301 176 30 chr6 48095258 48095491 -101421546 + Lx8 LINE L1 7200 7466 -7 2 951 344 200 14 0 chr6 48095505 48095575 -101421462 - Lx7 LINE L1 -1287 6409 6339 2 951 1679 224 29 10 chr6 48095621 48096004 -101421033 + Lx7 LINE L1 6644 7033 -663 2 951 823 239 137 22 chr6 48096014 48096335 -101420702 - ORR1D1-int LTR MaLR -921 449 92 2 951 36536 66 2 2 chr6 48096344 48102611 -101414426 - L1Md_F2 LINE L1 -1 6581 382 2 951 1489 173 83 3 chr6 48102627 48102928 -101414109 - Lx4A LINE L1 0 7058 6734 2 951 271 272 9 28 chr6 48102928 48103034 -101414003 - ORR1D1-int LTR MaLR -1404 105 2 2 118 1188 264 31 23 chr6 48103088 48103441 -101413596 - ORR1D1 LTR MaLR -18 356 1 2 952 269 294 72 54 chr6 48103473 48103750 -101413287 + HAL1 LINE L1 1600 1881 -626 2 952 23 0 0 0 chr6 48104313 48104336 -101412701 + AT_rich Low_complexity Low_complexity 1 23 0 2 952 653 14 0 0 chr6 48104712 48104784 -101412253 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 2 952 365 175 10 0 chr6 48104863 48104966 -101412071 + (CA)n Simple_repeat Simple_repeat 1 104 0 2 952 775 276 79 16 chr6 48105741 48105995 -101411042 - Lx8 LINE L1 -882 6591 6322 2 952 448 309 8 8 chr6 48106006 48106133 -101410904 + Lx8 LINE L1 6198 6324 -1149 2 952 653 14 0 0 chr6 48106273 48106345 -101410692 - tRNA-Cys-TGY tRNA tRNA -3 72 1 2 952 284 305 176 30 chr6 48106614 48106847 -101410190 + Lx8 LINE L1 7200 7466 -7 2 952 329 185 0 2 chr6 48106861 48106922 -101410115 - Lx7 LINE L1 -1287 6409 6339 2 952 1654 248 8 8 chr6 48106977 48107367 -101409670 + Lx7 LINE L1 6644 7033 -663 2 952 626 251 18 11 chr6 48107377 48107575 -101409462 - ORR1D1-int LTR MaLR -921 449 250 2 952 1439 54 20 0 chr6 48107743 48107946 -101409091 - MTA_Mm LTR MaLR 0 396 190 2 952 380 277 15 0 chr6 48107959 48108089 -101408948 - ORR1D1-int LTR MaLR -1147 223 92 2 952 1464 180 83 3 chr6 48108100 48108401 -101408636 - Lx4A LINE L1 0 7058 6734 2 952 269 255 47 38 chr6 48108401 48108507 -101408530 - ORR1D1-int LTR MaLR -1262 108 2 2 952 1214 264 31 23 chr6 48108561 48108914 -101408123 - ORR1D1 LTR MaLR -18 356 1 2 952 256 271 33 53 chr6 48109071 48109223 -101407814 + HAL1 LINE L1 1733 1881 -626 2 952 26 0 0 0 chr6 48109775 48109801 -101407236 + AT_rich Low_complexity Low_complexity 1 26 0 2 952 653 14 0 0 chr6 48110177 48110249 -101406788 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 2 952 542 100 0 0 chr6 48111173 48111243 -101405794 + tRNA-Cys-TGY tRNA tRNA 3 72 -3 2 952 547 171 0 106 chr6 48111835 48112005 -101405032 + Lx2B LINE L1 6841 6992 -8 2 952 360 0 0 0 chr6 48112545 48112585 -101404452 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 952 658 14 0 0 chr6 48114099 48114171 -101402866 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 2 952 311 127 0 16 chr6 48114242 48114306 -101402731 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 952 34 79 0 0 chr6 48114333 48114409 -101402628 + AT_rich Low_complexity Low_complexity 1 76 0 2 952 1162 82 0 0 chr6 48115542 48115688 -101401349 - B1_Mm SINE Alu 0 147 2 2 952 435 187 67 2 chr6 48115747 48115828 -101401209 - RSINE1 SINE B4 -202 90 1 2 952 38764 41 0 3 chr6 48116488 48122922 -101394115 - L1Md_T LINE L1 0 6585 76 2 952 297 332 98 73 chr6 48123046 48123251 -101393786 + L2 LINE L2 2159 2368 -1051 2 952 282 56 0 0 chr6 48123251 48123287 -101393750 + RMER15 LTR ERVL 3 38 -537 2 952 4230 213 59 25 chr6 48123288 48124258 -101392779 - RMER19B LTR ERVK 0 902 1 2 952 242 269 0 0 chr6 48124258 48124309 -101392728 + RMER15 LTR ERVL 34 84 -491 2 952 5562 236 34 8 chr6 48124312 48125456 -101391581 + RMER15-int LTR ERVL 1079 2252 -2747 2 952 2216 128 102 6 chr6 48125462 48125814 -101391223 - ORR1B1 LTR MaLR -8 386 1 2 952 568 233 37 8 chr6 48125814 48125948 -101391089 + RMER15-int LTR ERVL 2252 2389 -2610 2 952 22 35 0 0 chr6 48126064 48126093 -101390944 + AT_rich Low_complexity Low_complexity 1 29 0 2 952 1284 228 18 22 chr6 48126100 48126373 -101390664 + RMER15-int LTR ERVL 4489 4760 -239 2 952 263 235 70 12 chr6 48126443 48126529 -101390508 + Lx8 LINE L1 6941 7031 -442 2 952 2828 152 142 12 chr6 48126531 48127037 -101390000 + RMER15 LTR ERVL 1 572 -3 2 952 252 0 0 0 chr6 48128165 48128193 -101388844 + (T)n Simple_repeat Simple_repeat 1 28 0 2 952 321 266 180 0 chr6 48128196 48128335 -101388702 + HAL1-3A_ME LINE L1 2276 2439 -419 2 952 224 148 0 69 chr6 48128431 48128489 -101388548 + G-rich Low_complexity Low_complexity 5 58 0 2 952 1596 160 92 41 chr6 48128960 48129350 -101387687 + RMER17C LTR ERVK 1 410 0 2 952 558 0 0 0 chr6 48129360 48129422 -101387615 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 952 333 225 193 48 chr6 48130255 48130400 -101386637 + Lx2B LINE L1 6825 6990 -10 2 952 924 122 84 12 chr6 48130500 48130666 -101386371 - RMER4A LTR ERVK -288 178 1 2 952 4311 186 39 32 chr6 48130672 48131352 -101385685 + RLTR14-int LTR ERV1 3649 4339 -978 2 952 414 0 0 0 chr6 48131352 48131398 -101385639 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 952 4311 186 39 32 chr6 48131398 48131572 -101385465 + RLTR14-int LTR ERV1 4340 4509 -808 2 952 1958 162 48 0 chr6 48131784 48132118 -101384919 + RLTR14-int LTR ERV1 4487 4836 -481 2 952 431 165 12 12 chr6 48132325 48132405 -101384632 + RLTR14-int LTR ERV1 4830 4909 -408 2 952 486 0 0 0 chr6 48132410 48132464 -101384573 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 952 835 152 0 27 chr6 48132464 48132647 -101384390 + GA-rich Low_complexity Low_complexity 3 180 0 2 952 414 0 0 0 chr6 48132654 48132700 -101384337 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 2 952 1006 131 170 61 chr6 48132712 48132924 -101384113 + RLTR14-int LTR ERV1 5083 5317 0 2 952 4211 50 2 6 chr6 48133440 48133945 -101383092 + RLTR1C LTR ERV1 1 503 0 2 952 7073 26 0 0 chr6 48134053 48134856 -101382181 + L1Md_A LINE L1 5780 6582 0 2 952 380 312 28 0 chr6 48135401 48135466 -101381571 + L2 LINE L2 2527 2594 -825 2 952 2066 159 53 0 chr6 48135466 48135825 -101381212 + ORR1C1 LTR MaLR 1 378 0 2 952 380 312 28 0 chr6 48135825 48135903 -101381134 + L2 LINE L2 2595 2673 -746 2 952 606 56 0 0 chr6 48136316 48136388 -101380649 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 2 952 395 310 106 10 chr6 48136619 48136818 -101380219 - LTR41B LTR ERVL 0 758 541 2 952 513 0 0 0 chr6 48137084 48137141 -101379896 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 952 309 267 42 17 chr6 48137174 48137292 -101379745 - L1MA4 LINE L1 -385 5915 5795 2 952 583 359 60 60 chr6 48138682 48139222 -101377815 + MLT1H-int LTR MaLR 207 746 -663 2 952 352 261 92 27 chr6 48139222 48139381 -101377656 - ORR1E LTR MaLR -1 369 213 2 952 355 376 72 0 chr6 48139746 48139927 -101377110 + MLT1H-int LTR MaLR 807 1000 -387 2 952 711 246 67 16 chr6 48140309 48140503 -101376534 - MTEa LTR MaLR -16 363 160 2 952 481 327 26 0 chr6 48140605 48140761 -101376276 - MTEa LTR MaLR -214 165 6 2 952 810 0 0 0 chr6 48141329 48141419 -101375618 + (GAA)n Simple_repeat Simple_repeat 3 92 0 2 952 410 239 222 22 chr6 48141666 48141846 -101375191 + B3 SINE B2 1 216 0 2 952 3189 158 35 13 chr6 48142223 48142691 -101374346 + RMER13A LTR ERVK 1 482 -378 2 952 1084 77 0 34 chr6 48142691 48142838 -101374199 + B1_Mur3 SINE Alu 2 143 -6 2 952 342 0 0 0 chr6 48142841 48142879 -101374158 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 952 3189 158 35 13 chr6 48142879 48142946 -101374091 + RMER13A LTR ERVK 483 551 -309 2 952 6193 153 29 50 chr6 48142947 48143893 -101373144 - MTC-int LTR MaLR -130 1128 193 2 952 1369 131 22 5 chr6 48143893 48144115 -101372922 + URR1A DNA MER1_type 1 226 0 2 952 6193 153 29 50 chr6 48144115 48144321 -101372716 - MTC-int LTR MaLR -1066 192 1 2 952 2054 128 125 24 chr6 48144325 48144700 -101372337 - MTC LTR MaLR -8 413 1 2 952 270 0 0 0 chr6 48144703 48144733 -101372304 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 952 249 282 85 39 chr6 48145471 48145600 -101371437 + RMER15 LTR ERVL 286 420 -155 2 952 204 40 0 0 chr6 48146290 48146315 -101370722 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 2 952 225 0 0 0 chr6 48146371 48146396 -101370641 + (TATG)n Simple_repeat Simple_repeat 2 26 0 2 952 1182 186 13 18 chr6 48146618 48146843 -101370194 - ORR1D1 LTR MaLR -150 224 1 2 952 658 14 0 0 chr6 48147024 48147096 -101369941 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 3 952 266 271 29 0 chr6 48147988 48148058 -101368979 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 3 952 675 307 96 63 chr6 48148201 48148597 -101368440 - MLT2D LTR ERVL 0 414 6 3 952 828 100 0 0 chr6 48149527 48149647 -101367390 + (GAA)n Simple_repeat Simple_repeat 1 120 0 3 952 482 300 151 108 chr6 48150234 48150454 -101366583 - ORR1E LTR MaLR 0 359 127 3 952 1191 112 0 0 chr6 48150454 48150633 -101366404 + (TC)n Simple_repeat Simple_repeat 1 179 0 3 952 482 300 151 108 chr6 48150633 48150648 -101366389 - ORR1E LTR MaLR -233 126 116 3 952 4182 149 44 0 chr6 48150648 48151313 -101365724 - Lx LINE L1 -12 6642 5949 3 952 482 300 151 108 chr6 48151313 48151420 -101365617 - ORR1E LTR MaLR -244 115 1 3 952 2307 301 109 40 chr6 48151420 48152324 -101364713 - MTE-int LTR MaLR -53 1527 561 3 952 2804 229 132 19 chr6 48152340 48153098 -101363939 - Lx8 LINE L1 -21 7452 6609 3 952 802 316 92 67 chr6 48153098 48153488 -101363549 - MTE-int LTR MaLR -994 586 187 3 952 442 167 0 0 chr6 48153748 48153820 -101363217 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 3 952 510 296 118 32 chr6 48153953 48154254 -101362783 - ORR1E LTR MaLR -2 377 36 3 952 1149 276 105 6 chr6 48154241 48154565 -101362472 - MTE-int LTR MaLR -18 1562 1207 3 952 592 56 0 0 chr6 48155066 48155138 -101361899 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 3 952 658 14 0 0 chr6 48157449 48157521 -101359516 - tRNA-Cys-TGY tRNA tRNA -3 72 1 3 952 246 277 112 16 chr6 48157880 48157972 -101359065 - L2b LINE L2 -1 3386 3289 3 952 1320 169 74 93 chr6 48158496 48158873 -101358164 + ORR1D1 LTR MaLR 1 370 -4 3 952 651 308 70 82 chr6 48159270 48159664 -101357373 + MLT2D LTR ERVL 27 414 0 3 952 649 14 0 0 chr6 48159836 48159908 -101357129 - tRNA-Cys-TGY tRNA tRNA -3 72 1 3 952 230 310 66 57 chr6 48160233 48160339 -101356698 + MER5A DNA MER1_type 73 179 -10 3 952 2295 140 46 14 chr6 48160750 48160991 -101356046 - RLTR14 LTR ERV1 0 382 146 3 952 2051 100 42 63 chr6 48160991 48161323 -101355714 - ORR1A3 LTR MaLR -1 325 1 3 952 2295 140 46 14 chr6 48161323 48161451 -101355586 - RLTR14 LTR ERV1 -237 145 1 3 952 993 207 11 5 chr6 48161731 48161920 -101355117 + ORR1D1 LTR MaLR 1 190 -184 3 952 309 238 0 0 chr6 48161920 48162021 -101355016 + (TCTG)n Simple_repeat Simple_repeat 4 104 0 3 952 894 163 143 26 chr6 48162024 48162213 -101354824 + ORR1D1 LTR MaLR 172 382 -2 3 952 938 206 103 218 chr6 48162632 48163049 -101353988 + ORR1D2 LTR MaLR 2 370 0 3 952 826 193 0 0 chr6 48163589 48163724 -101353313 + B1_Mus1 SINE Alu 2 136 -12 3 952 375 60 0 0 chr6 48163724 48163774 -101353263 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 3 952 543 289 116 8 chr6 48163811 48164052 -101352985 + MLT2D LTR ERVL 28 294 -120 3 952 894 239 24 19 chr6 48164077 48164290 -101352747 + B3 SINE B2 3 216 0 3 952 442 132 15 0 chr6 48164595 48164663 -101352374 - tRNA-Cys-TGY tRNA tRNA -6 69 1 3 952 247 308 8 24 chr6 48167434 48167557 -101349480 - RMER15 LTR ERVL -155 420 300 3 952 1212 55 0 7 chr6 48168154 48168302 -101348735 + B1_Mus1 SINE Alu 2 148 0 3 952 1143 188 39 0 chr6 48168499 48168706 -101348331 + B3 SINE B2 2 216 0 3 952 418 200 27 0 chr6 48168846 48168921 -101348116 + ID4 SINE ID 1 77 -6 3 952 429 20 0 0 chr6 48169324 48169374 -101347663 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 952 245 342 9 9 chr6 48169409 48169524 -101347513 - MLT1A1 LTR MaLR -286 122 8 3 952 327 259 43 50 chr6 48171128 48171297 -101345740 + ORR1E LTR MaLR 213 369 -1 3 952 338 356 84 81 chr6 48171297 48171835 -101345202 - MLT1A1-int LTR MaLR -663 746 207 3 952 396 0 0 0 chr6 48172427 48172471 -101344566 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 952 659 27 0 0 chr6 48173090 48173164 -101343873 - tRNA-Cys-TGY tRNA tRNA -1 74 1 3 952 198 171 0 0 chr6 48173716 48173757 -101343280 + T-rich Low_complexity Low_complexity 5 45 0 3 952 884 170 9 0 chr6 48173750 48173962 -101343075 + CT-rich Low_complexity Low_complexity 1 213 0 3 952 616 54 0 0 chr6 48174325 48174399 -101342638 - tRNA-Cys-TGY tRNA tRNA -1 74 1 3 952 380 228 70 0 chr6 48174593 48174699 -101342338 + B3A SINE B2 14 124 -71 3 952 315 0 0 0 chr6 48174749 48174784 -101342253 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 952 209 109 22 0 chr6 48174789 48174835 -101342202 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 3 952 2795 151 2 26 chr6 48175351 48175847 -101341190 + L1_Mur2 LINE L1 3332 3815 -2062 3 952 1017 105 0 0 chr6 48175987 48176140 -101340897 + RLTR1C LTR ERV1 344 496 -7 3 952 2598 127 5 35 chr6 48176146 48176577 -101340460 + MMVL30-int LTR ERV1 1 418 -7138 3 952 557 245 21 14 chr6 48176612 48176757 -101340280 + MMVL30-int LTR ERV1 388 533 -7023 3 952 237 83 0 0 chr6 48176794 48176830 -101340207 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 3 952 4927 107 4 16 chr6 48177112 48177816 -101339221 + MMVL30-int LTR ERV1 772 1467 -2231 3 952 533 171 116 159 chr6 48177858 48178109 -101338928 + MMVL30-int LTR ERV1 960 1199 -2100 3 952 3084 74 5 2 chr6 48178363 48178768 -101338269 + MMVL30-int LTR ERV1 1501 1906 -1792 3 952 36023 47 0 4 chr6 48178768 48184254 -101332783 + L1Md_T LINE L1 26 5589 -297 3 952 8618 31 1 0 chr6 48184254 48185249 -101331788 + L1Md_T LINE L1 5590 6585 0 3 952 560 89 13 0 chr6 48185249 48185328 -101331709 + MMVL30-int LTR ERV1 1893 1972 -1726 3 952 37527 29 1 9 chr6 48185334 48190525 -101326512 + L1Md_T LINE L1 441 5586 -297 3 952 8543 34 1 0 chr6 48190525 48191520 -101325517 + L1Md_T LINE L1 5587 6582 0 3 952 12001 87 33 26 chr6 48191520 48193247 -101323790 + MMVL30-int LTR ERV1 1960 3698 0 3 952 3168 35 2 0 chr6 48193247 48193653 -101323384 + RLTR1C LTR ERV1 1 407 -96 3 952 182 274 176 8 chr6 48194056 48194181 -101322856 - MER5B DNA MER1_type -7 171 26 3 952 653 14 0 0 chr6 48194314 48194386 -101322651 - tRNA-Cys-TGY tRNA tRNA -3 72 1 3 952 3134 181 190 64 chr6 48194531 48195332 -101321705 + RMER19B LTR ERVK 1 902 0 3 952 262 335 7 7 chr6 48195901 48196054 -101320983 - LTR16C LTR ERVL -1 488 336 3 952 340 279 67 79 chr6 48196331 48196646 -101320391 - L1M5 LINE L1 -2318 3828 3518 3 952 23 0 0 0 chr6 48196678 48196701 -101320336 + AT_rich Low_complexity Low_complexity 1 23 0 3 952 296 138 0 15 chr6 48197004 48197070 -101319967 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 952 27 0 0 0 chr6 48197170 48197197 -101319840 + AT_rich Low_complexity Low_complexity 1 27 0 3 952 387 159 11 54 chr6 48197262 48197355 -101319682 - L1_Mm LINE L1 -4317 1566 1478 3 952 776 44 0 0 chr6 48197331 48197421 -101319616 + L1Md_F2 LINE L1 5497 5586 -297 3 952 8345 40 2 5 chr6 48197421 48198419 -101318618 + L1Md_F2 LINE L1 5587 6581 -1 3 952 428 209 28 19 chr6 48198419 48198442 -101318595 + L1M2 LINE L1 5616 5639 -658 3 952 462 169 205 51 chr6 48198456 48198612 -101318425 - Lx8 LINE L1 -334 7139 6960 3 952 1808 235 109 0 chr6 48198986 48199500 -101317537 - Lx8 LINE L1 -519 6954 6385 3 952 1984 166 9 11 chr6 48200658 48201005 -101316032 + ORR1A1 LTR MaLR 1 346 0 3 952 319 200 29 0 chr6 48201149 48201219 -101315818 - tRNA-Cys-TGY tRNA tRNA -3 72 1 3 952 659 27 0 0 chr6 48202099 48202173 -101314864 - tRNA-Cys-TGY tRNA tRNA -1 74 1 3 952 626 42 0 0 chr6 48203078 48203150 -101313887 - tRNA-Cys-TGY tRNA tRNA -3 72 1 3 952 7908 135 2 14 chr6 48203972 48204207 -101312830 + L1_Mus2 LINE L1 4642 4862 -1021 3 952 3360 51 2 0 chr6 48204207 48204619 -101312418 - L1Md_F2 LINE L1 0 6582 6170 3 952 7908 128 40 47 chr6 48204619 48206326 -101310711 + L1_Mus2 LINE L1 4863 6566 0 3 952 530 272 129 103 chr6 48206326 48206859 -101310178 + RMER4B LTR ERVK 30 576 -9 3 952 1689 180 3 68 chr6 48206902 48207254 -101309783 - ORR1A4 LTR MaLR 0 329 1 3 952 7605 110 41 9 chr6 48208603 48211121 -101305916 + Lx2 LINE L1 769 2404 -1510 3 952 653 14 0 0 chr6 48211720 48211792 -101305245 - tRNA-Cys-TGY tRNA tRNA -3 72 1 3 952 737 262 25 19 chr6 48211938 48212192 -101304845 + RMER19B LTR ERVK 1 224 -678 3 952 2346 170 67 26 chr6 48212202 48212708 -101304329 + RMER19B LTR ERVK 349 875 -27 3 952 20486 158 19 8 chr6 48212729 48216917 -101300120 + L1VL2 LINE L1 390 4632 -1251 3 952 207 0 0 0 chr6 48216917 48216940 -101300097 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 952 20486 170 16 7 chr6 48216940 48217033 -101300004 + L1VL2 LINE L1 4633 4735 -1148 3 952 182 33 67 0 chr6 48217033 48217063 -101299974 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 952 20486 170 16 7 chr6 48217063 48217197 -101299840 + L1VL2 LINE L1 4736 4861 -1022 3 952 4500 27 29 2 chr6 48217197 48217721 -101299316 - L1Md_T LINE L1 -1 6581 6044 3 952 20486 170 16 7 chr6 48217721 48217953 -101299084 + L1VL2 LINE L1 4862 5092 -791 3 952 1134 182 62 22 chr6 48217953 48218178 -101298859 + Lx LINE L1 6309 6542 -112 3 952 653 14 0 0 chr6 48218456 48218528 -101298509 - tRNA-Cys-TGY tRNA tRNA -3 72 1 3 952 331 157 71 0 chr6 48218674 48218744 -101298293 + RMER19B LTR ERVK 1 75 -827 3 952 7032 94 22 36 chr6 48218763 48219399 -101297638 - L1_Mus3 LINE L1 -1 6637 6014 3 952 1185 61 0 0 chr6 48219399 48219546 -101297491 - B1_Mm SINE Alu 0 147 1 3 952 7827 119 8 37 chr6 48219546 48220889 -101296148 - L1_Mus3 LINE L1 -625 6013 4695 3 952 976 110 7 0 chr6 48220889 48221025 -101296012 + B1_Mm SINE Alu 3 139 -8 3 952 7827 130 2 37 chr6 48221025 48221102 -101295935 - L1_Mus3 LINE L1 -1189 4694 4642 3 952 653 14 0 0 chr6 48221924 48221996 -101295041 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 3 952 2107 162 45 13 chr6 48222273 48222655 -101294382 - Lx LINE L1 -96 6558 6165 3 952 3507 114 6 21 chr6 48222649 48223177 -101293860 - L1_Mm LINE L1 -79 5804 5285 3 952 653 14 0 0 chr6 48223678 48223750 -101293287 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 3 952 781 279 81 70 chr6 48224022 48224391 -101292646 + MTE2a LTR MaLR 6 384 -35 3 952 2144 193 91 9 chr6 48224363 48224823 -101292214 - RMER19B LTR ERVK -12 890 393 3 952 1243 157 9 171 chr6 48224856 48225178 -101291859 - RMER19B LTR ERVK -632 270 1 3 952 369 200 12 12 chr6 48225178 48225263 -101291774 + MTE2a LTR MaLR 295 379 0 3 952 455 275 103 121 chr6 48226179 48226733 -101290304 - RMER4B LTR ERVK -12 573 30 3 952 7929 101 10 32 chr6 48226733 48228725 -101288312 - L1_Mus3 LINE L1 -6 6632 4659 3 952 574 69 0 0 chr6 48228790 48228862 -101288175 - tRNA-Cys-TGY tRNA tRNA -3 72 1 3 952 653 14 0 0 chr6 48229769 48229841 -101287196 - tRNA-Cys-TGY tRNA tRNA -3 72 1 3 952 3554 146 20 31 chr6 48230018 48230667 -101286370 - RLTR26 LTR ERVK 0 642 1 3 952 856 218 93 56 chr6 48231280 48231582 -101285455 + RMER4B LTR ERVK 1 313 -272 3 952 319 206 42 42 chr6 48231640 48231736 -101285301 + RMER4B LTR ERVK 453 548 -37 3 952 1655 260 32 11 chr6 48231760 48232210 -101284827 + MurERV4-int LTR ERVK 2 474 -4786 3 952 390 293 8 8 chr6 48232194 48232311 -101284726 + MurERV4-int LTR ERVK 387 503 -5277 3 952 2407 253 20 14 chr6 48232346 48232934 -101284103 + MurERV4-int LTR ERVK 563 1154 -4106 3 14 16726 109 15 7 chr6 48232934 48236376 -101280661 + L1VL4 LINE L1 386 3873 -2270 3 953 1899 152 0 0 chr6 48236374 48236664 -101280373 - MusHAL1 LINE L1 -3060 294 5 3 953 1263 250 45 61 chr6 48236669 48237065 -101279972 + MYSERV-int LTR ERVK 4719 5108 -1442 3 953 349 316 0 36 chr6 48237084 48237173 -101279864 + RMER4A LTR ERVK 259 347 -119 3 953 1119 124 0 0 chr6 48237173 48237350 -101279687 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 4 953 349 316 0 36 chr6 48237350 48237398 -101279639 + RMER4A LTR ERVK 348 391 -75 3 953 295 215 68 41 chr6 48237395 48237513 -101279524 + RMER4A LTR ERVK 346 556 -29 3 953 1761 222 61 20 chr6 48237513 48238069 -101278968 + MYSERV-int LTR ERVK 5335 5913 -637 3 953 617 42 0 0 chr6 48238874 48238946 -101278091 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 360 0 0 0 chr6 48239127 48239167 -101277870 + (A)n Simple_repeat Simple_repeat 1 40 0 4 953 509 0 0 0 chr6 48239226 48239287 -101277750 + U4 snRNA snRNA 1 61 -84 4 953 2773 60 0 0 chr6 48239335 48239667 -101277370 - IAPEY3_LTR LTR ERVK 0 332 1 4 953 3582 107 14 28 chr6 48239667 48240399 -101276638 - IAPEY3-int LTR ERVK 0 7581 6908 4 953 1786 98 4 0 chr6 48240399 48240634 -101276403 - IAPEY3-int LTR ERVK -4393 3287 3052 4 953 9845 111 13 12 chr6 48240621 48242048 -101274989 - IAPEY3-int LTR ERVK -6251 1429 1 4 953 2809 48 0 0 chr6 48242048 48242380 -101274657 - IAPEY3_LTR LTR ERVK 0 332 1 4 953 642 28 0 0 chr6 48243005 48243077 -101273960 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 1019 266 57 46 chr6 48244343 48244469 -101272568 + ORR1D1 LTR MaLR 3 134 -240 4 953 6718 63 29 6 chr6 48244469 48245256 -101271781 + L1Md_F2 LINE L1 5695 6479 -103 4 953 189 74 0 0 chr6 48245256 48245283 -101271754 + (TGGG)n Simple_repeat Simple_repeat 1 27 0 4 953 6718 63 29 6 chr6 48245283 48245363 -101271674 + L1Md_F2 LINE L1 6480 6582 0 4 953 1019 266 57 46 chr6 48245363 48245586 -101271451 + ORR1D1 LTR MaLR 135 356 -18 4 953 364 292 9 9 chr6 48245639 48245746 -101271291 + ORR1D1-int LTR MaLR 2 108 -1262 4 953 1527 183 80 3 chr6 48245746 48246048 -101270989 + Lx4A LINE L1 6734 7058 0 4 953 929 282 62 0 chr6 48246064 48246401 -101270636 + ORR1D1-int LTR MaLR 92 449 -921 4 953 1612 235 28 26 chr6 48246411 48246800 -101270237 - Lx7 LINE L1 -663 7033 6644 4 953 343 161 0 0 chr6 48246851 48246907 -101270130 + Lx7 LINE L1 6345 6400 -1296 4 953 250 323 176 30 chr6 48246929 48247162 -101269875 - Lx8 LINE L1 -7 7466 7200 4 953 653 14 0 0 chr6 48247431 48247503 -101269534 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 4 953 396 325 8 8 chr6 48247643 48247770 -101269267 - Lx8 LINE L1 -1149 6324 6198 4 953 868 271 75 16 chr6 48247781 48248036 -101269001 + Lx8 LINE L1 6322 6591 -882 4 953 230 279 0 0 chr6 48248785 48248846 -101268191 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 953 653 14 0 0 chr6 48248948 48249020 -101268017 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 1167 257 32 24 chr6 48250285 48250624 -101266413 + ORR1D1 LTR MaLR 1 342 -32 4 953 315 218 57 47 chr6 48250692 48250798 -101266239 + ORR1D1-int LTR MaLR 2 108 -1262 4 953 1476 167 87 3 chr6 48250798 48251098 -101265939 + Lx4A LINE L1 6734 7058 0 4 953 771 281 81 12 chr6 48251109 48251444 -101265593 + ORR1D1-int LTR MaLR 92 449 -921 4 953 1291 270 60 0 chr6 48251454 48251821 -101265216 - Lx7 LINE L1 -663 7033 6645 4 953 311 242 0 0 chr6 48251874 48251940 -101265097 + Lx7 LINE L1 6344 6409 -1287 4 953 296 339 17 0 chr6 48252071 48252189 -101264848 - Lx8 LINE L1 -155 7318 7199 4 953 614 54 0 0 chr6 48252457 48252531 -101264506 + tRNA-Cys-TGY tRNA tRNA 1 74 -1 4 953 198 0 0 0 chr6 48253261 48253283 -101263754 + (GA)n Simple_repeat Simple_repeat 2 23 0 4 953 640 28 0 0 chr6 48253463 48253535 -101263502 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 4 953 479 286 30 8 chr6 48254055 48254189 -101262848 - Lx8 LINE L1 -1139 6334 6198 4 953 798 278 72 20 chr6 48254218 48254468 -101262569 + Lx8 LINE L1 6329 6591 -882 4 953 626 166 0 7 chr6 48255219 48255371 -101261666 + (TG)n Simple_repeat Simple_repeat 2 152 0 4 953 603 56 0 0 chr6 48255462 48255534 -101261503 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 2000 236 168 4 chr6 48256637 48257161 -101259876 - RMER19C LTR ERVK -1 610 1 4 953 599 56 0 0 chr6 48258727 48258799 -101258238 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 653 14 0 0 chr6 48259705 48259777 -101257260 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 607 284 92 16 chr6 48260162 48260466 -101256571 + ORR1D-int LTR MaLR 123 449 -921 4 953 1651 248 5 5 chr6 48260476 48260866 -101256171 - Lx7 LINE L1 -663 7033 6644 4 953 366 185 0 0 chr6 48260917 48260982 -101256055 + Lx7 LINE L1 6345 6409 -1287 4 953 276 310 176 30 chr6 48260996 48261229 -101255808 - Lx8 LINE L1 -7 7466 7200 4 953 646 14 0 0 chr6 48261498 48261569 -101255468 + tRNA-Cys-TGY tRNA tRNA 2 72 -3 4 953 372 325 8 8 chr6 48261689 48261816 -101255221 - Lx8 LINE L1 -1149 6324 6198 4 953 845 271 75 16 chr6 48261827 48262082 -101254955 + Lx8 LINE L1 6322 6591 -882 4 953 321 100 0 0 chr6 48262854 48262904 -101254133 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 953 653 14 0 0 chr6 48263016 48263088 -101253949 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 1190 257 32 24 chr6 48264360 48264699 -101252338 + ORR1D1 LTR MaLR 1 342 -32 4 953 931 251 71 69 chr6 48264767 48264867 -101252170 + ORR1D1-int LTR MaLR 2 99 -1271 4 953 1522 157 88 3 chr6 48264867 48265174 -101251863 + Lx4A LINE L1 6726 7058 0 4 953 931 251 71 69 chr6 48265174 48265522 -101251515 + ORR1D1-int LTR MaLR 100 451 -919 4 953 1319 262 60 5 chr6 48265530 48265899 -101251138 - Lx7 LINE L1 -663 7033 6645 4 953 318 222 0 0 chr6 48265951 48266014 -101251023 + Lx7 LINE L1 6344 6406 -1290 4 953 257 295 26 0 chr6 48266188 48266266 -101250771 - Lx8 LINE L1 -195 7278 7199 4 953 519 81 0 0 chr6 48266534 48266608 -101250429 + tRNA-Cys-TGY tRNA tRNA 1 74 -1 4 953 653 14 0 0 chr6 48267513 48267585 -101249452 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 4 953 462 302 8 8 chr6 48268112 48268239 -101248798 - Lx8 LINE L1 -1149 6324 6198 4 953 870 270 70 16 chr6 48268250 48268506 -101248531 + Lx8 LINE L1 6322 6591 -882 4 953 512 189 0 7 chr6 48269255 48269399 -101247638 + (TG)n Simple_repeat Simple_repeat 2 144 0 4 953 8238 48 2 1 chr6 48269453 48270808 -101246229 - L1Md_F2 LINE L1 -3 6579 5224 4 953 3636 48 5 2 chr6 48270808 48271243 -101245794 + RLTR10C LTR ERVK 1 436 0 4 953 2824 61 0 0 chr6 48271243 48271586 -101245451 + MMERVK10C-int LTR ERVK 1 343 -7238 4 953 773 200 5 10 chr6 48271584 48271776 -101245261 + MMERVK10C-int LTR ERVK 729 919 -6662 4 953 514 114 0 0 chr6 48271795 48271874 -101245163 + MMERVK10C-int LTR ERVK 874 952 -6629 4 953 672 240 155 70 chr6 48271964 48272348 -101244689 + MMERVK10C-int LTR ERVK 2079 2425 -4819 4 953 331 155 17 0 chr6 48272332 48272390 -101244647 + MMERVK10C-int LTR ERVK 1721 1779 -5627 4 953 46186 15 1 1 chr6 48272397 48277498 -101239539 + MMERVK10C-int LTR ERVK 1885 7581 0 4 953 3636 48 5 2 chr6 48277498 48277933 -101239104 + RLTR10C LTR ERVK 1 436 0 4 953 30810 70 3 3 chr6 48277933 48282791 -101234246 - L1Md_Gf LINE L1 -654 5232 278 4 953 653 14 0 0 chr6 48282838 48282910 -101234127 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 1841 234 167 21 chr6 48284001 48284533 -101232504 - RMER19C LTR ERVK -1 610 1 4 953 653 14 0 0 chr6 48286106 48286178 -101230859 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 653 14 0 0 chr6 48287089 48287161 -101229876 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 262 269 106 73 chr6 48288090 48288363 -101228674 - HAL1 LINE L1 -626 1881 1600 4 953 1246 260 34 20 chr6 48288395 48288748 -101228289 + ORR1D1 LTR MaLR 1 358 -16 4 953 421 262 0 9 chr6 48288802 48288910 -101228127 + ORR1D1-int LTR MaLR 2 108 -1262 4 953 1512 170 105 0 chr6 48288910 48289204 -101227833 + Lx4A LINE L1 6734 7058 0 4 953 722 277 78 9 chr6 48289222 48289557 -101227480 + ORR1D1-int LTR MaLR 92 449 -921 4 953 1707 238 8 8 chr6 48289567 48289957 -101227080 - Lx7 LINE L1 -663 7033 6644 4 953 316 213 0 0 chr6 48290004 48290065 -101226972 + Lx7 LINE L1 6340 6400 -1296 4 953 186 71 0 0 chr6 48290066 48290094 -101226943 + (A)n Simple_repeat Simple_repeat 1 28 0 4 953 258 294 176 53 chr6 48290099 48290343 -101226694 - Lx8 LINE L1 -1 7472 7199 4 953 648 40 0 0 chr6 48290611 48290685 -101226352 + tRNA-Cys-TGY tRNA tRNA 1 74 -1 4 953 597 42 0 0 chr6 48291586 48291658 -101225379 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 4 953 40017 32 1 7 chr6 48291662 48297850 -101219187 - L1Md_T LINE L1 0 6582 440 4 953 489 273 38 8 chr6 48298377 48298510 -101218527 - Lx8 LINE L1 -1139 6334 6198 4 953 820 274 70 23 chr6 48298521 48298779 -101218258 + Lx8 LINE L1 6322 6591 -882 4 953 527 184 0 7 chr6 48299527 48299669 -101217368 + (TG)n Simple_repeat Simple_repeat 2 142 0 4 953 653 14 0 0 chr6 48299760 48299832 -101217205 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 1899 249 168 4 chr6 48300935 48301459 -101215578 - RMER19C LTR ERVK -1 610 1 4 953 534 15 0 0 chr6 48303025 48303090 -101213947 - tRNA-Cys-TGY tRNA tRNA -3 72 8 4 953 653 14 0 0 chr6 48304017 48304089 -101212948 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 650 283 89 13 chr6 48304474 48304778 -101212259 + ORR1D-int LTR MaLR 123 449 -921 4 953 1698 249 3 3 chr6 48304788 48305178 -101211859 - Lx7 LINE L1 -663 7033 6644 4 953 314 213 0 0 chr6 48305225 48305286 -101211751 + Lx7 LINE L1 6340 6400 -1296 4 953 396 0 0 0 chr6 48305288 48305332 -101211705 + (A)n Simple_repeat Simple_repeat 1 44 0 4 953 297 284 171 53 chr6 48305340 48305585 -101211452 - Lx8 LINE L1 -1 7472 7199 4 953 659 27 0 0 chr6 48305853 48305927 -101211110 + tRNA-Cys-TGY tRNA tRNA 1 74 -1 4 953 619 56 0 0 chr6 48306849 48306921 -101210116 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 4 953 427 301 30 8 chr6 48307400 48307534 -101209503 - Lx8 LINE L1 -1139 6334 6198 4 953 882 266 70 16 chr6 48307545 48307801 -101209236 + Lx8 LINE L1 6322 6591 -882 4 953 396 0 0 0 chr6 48308617 48308661 -101208376 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 953 180 0 0 0 chr6 48308663 48308683 -101208354 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 953 1385 95 11 0 chr6 48309593 48309783 -101207254 + B2_Mm1t SINE B2 1 192 -1 4 953 824 278 0 9 chr6 48310266 48310480 -101206557 + B3 SINE B2 5 216 0 4 953 263 335 132 6 chr6 48311173 48311347 -101205690 - MLT1H-int LTR MaLR -711 698 503 4 953 383 188 12 12 chr6 48312059 48312144 -101204893 - MTE2a LTR MaLR 0 379 295 4 953 1260 150 9 171 chr6 48312144 48312466 -101204571 + RMER19B LTR ERVK 1 270 -632 4 953 1719 213 164 0 chr6 48312494 48312922 -101204115 + RMER19B LTR ERVK 393 890 -12 4 953 727 287 86 68 chr6 48312894 48313262 -101203775 - MTE2a LTR MaLR -35 384 6 4 953 653 14 0 0 chr6 48313530 48313602 -101203435 - tRNA-Cys-TGY tRNA tRNA -3 72 1 4 953 503 135 0 0 chr6 48314440 48314514 -101202523 - tRNA-Cys-TGY tRNA tRNA 0 75 2 4 953 1190 186 145 54 chr6 48315074 48315104 -101201933 + ORR1C2 LTR MaLR 1 27 -357 4 953 2235 57 4 0 chr6 48315104 48315384 -101201653 + L1Md_A LINE L1 6302 6582 0 4 953 1190 186 145 54 chr6 48315384 48315705 -101201332 + ORR1C2 LTR MaLR 28 384 0 4 953 1276 252 168 26 chr6 48316385 48316914 -101200123 - MTEa-int LTR MaLR -965 615 12 4 953 1173 219 92 11 chr6 48316933 48317214 -101199823 - MTEa LTR MaLR -8 371 68 4 953 260 292 15 0 chr6 48317448 48317513 -101199524 - MTEa LTR MaLR -313 66 1 4 953 972 335 58 5 chr6 48318299 48318695 -101198342 + MER70A LTR ERVL 1 417 -55 4 953 294 320 48 32 chr6 48318833 48318959 -101198078 + MER5A DNA MER1_type 57 184 -5 4 953 279 272 179 36 chr6 48318982 48319234 -101197803 - RLTR12B LTR ERVK 0 528 241 4 953 244 200 0 28 chr6 48319238 48319310 -101197727 + CT-rich Low_complexity Low_complexity 3 72 0 4 953 411 21 0 0 chr6 48319306 48319354 -101197683 + (TTTC)n Simple_repeat Simple_repeat 4 51 0 4 953 560 313 31 31 chr6 48319354 48319611 -101197426 - RLTR11A2 LTR ERVK -269 258 2 4 953 409 206 0 0 chr6 48319874 48319942 -101197095 - tRNA-Cys-TGY tRNA tRNA -4 71 4 4 953 217 277 0 0 chr6 48320195 48320242 -101196795 + C-rich Low_complexity Low_complexity 6 52 0 4 953 349 323 106 0 chr6 48321095 48321293 -101195744 + L2 LINE L2 1400 1618 -1801 4 953 810 261 127 70 chr6 48321389 48321899 -101195138 - L1MB5 LINE L1 -6 6168 5603 4 953 956 176 113 5 chr6 48321899 48321935 -101195102 - B3 SINE B2 0 216 181 4 953 488 16 16 0 chr6 48321935 48321996 -101195041 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 4 953 956 176 113 5 chr6 48321996 48322153 -101194884 - B3 SINE B2 -36 180 3 4 953 810 237 40 72 chr6 48322153 48322219 -101194818 - L1MB5 LINE L1 -578 5602 5537 4 953 387 105 0 0 chr6 48322496 48322553 -101194484 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 4 953 301 143 0 20 chr6 48322809 48322852 -101194185 - ORR1C2 LTR MaLR 0 384 343 5 953 922 147 14 124 chr6 48322852 48323069 -101193968 + RMER19B LTR ERVK 1 193 -418 5 953 525 267 49 16 chr6 48323069 48323191 -101193846 + ETnERV2-int LTR ERVK 7077 7202 -204 5 953 1384 221 90 121 chr6 48323569 48324111 -101192926 + RMER19B LTR ERVK 378 902 0 5 953 1434 181 56 47 chr6 48324116 48324458 -101192579 - ORR1C2 LTR MaLR -35 349 5 5 953 331 44 0 0 chr6 48325017 48325055 -101191982 + HAL1-3A_ME LINE L1 1973 2010 -848 5 953 351 0 0 0 chr6 48325055 48325094 -101191943 + (CTA)n Simple_repeat Simple_repeat 3 41 0 5 953 229 268 105 35 chr6 48325382 48325525 -101191512 - HAL1 LINE L1 -6 2501 2349 5 953 762 191 0 14 chr6 48325745 48325888 -101191149 - B1_Mur3 SINE Alu 0 149 9 5 953 717 51 0 0 chr6 48326110 48326208 -101190829 + (TC)n Simple_repeat Simple_repeat 1 98 0 5 953 17574 40 0 5 chr6 48326952 48328767 -101188270 + L1Md_F3 LINE L1 3487 5301 -582 5 953 1607 52 0 0 chr6 48328767 48328959 -101188078 + B2_Mm1a SINE B2 2 193 0 5 953 17574 40 0 5 chr6 48328959 48329254 -101187783 + L1Md_F3 LINE L1 5302 5586 -297 5 953 8421 37 1 4 chr6 48329254 48330255 -101186782 + L1Md_F3 LINE L1 5587 6584 0 5 953 545 268 66 12 chr6 48330392 48330558 -101186479 - B3 SINE B2 -12 204 30 5 953 686 246 50 15 chr6 48332158 48332192 -101184845 - B3 SINE B2 -6 192 150 5 953 302 107 0 18 chr6 48332192 48332249 -101184788 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 953 686 224 25 25 chr6 48332249 48332392 -101184645 - B3 SINE B2 -67 149 3 5 953 229 269 153 106 chr6 48332474 48332748 -101184289 - L1MEe LINE L1 -1018 5303 5017 5 953 4939 174 109 78 chr6 48333000 48333519 -101183518 + Lx9 LINE L1 6436 6996 -648 5 953 1084 64 28 0 chr6 48333519 48333660 -101183377 + B1_Mus1 SINE Alu 3 147 -1 5 953 4939 174 109 78 chr6 48333660 48333807 -101183230 + Lx9 LINE L1 6997 7083 -561 5 953 1210 55 0 7 chr6 48333807 48333955 -101183082 - B1_Mm SINE Alu 0 147 1 5 953 4939 174 109 78 chr6 48333955 48334331 -101182706 + Lx9 LINE L1 7084 7514 -130 5 953 387 0 0 0 chr6 48334331 48334374 -101182663 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 953 4939 174 109 78 chr6 48334374 48334501 -101182536 + Lx9 LINE L1 7515 7643 -1 5 953 230 230 35 130 chr6 48334524 48334639 -101182398 - ORR1E LTR MaLR -255 104 1 5 953 546 216 51 17 chr6 48335045 48335163 -101181874 + MTEb LTR MaLR 3 124 -255 5 953 859 247 26 16 chr6 48335179 48335372 -101181665 + MTEb LTR MaLR 185 379 0 5 953 314 276 91 46 chr6 48335383 48335558 -101181479 - L1MEe LINE L1 -1747 4574 4392 5 953 406 323 164 34 chr6 48336007 48336276 -101180761 - L1MEe LINE L1 -1973 4348 4045 5 953 493 310 101 34 chr6 48336518 48336955 -101180082 - L1M2 LINE L1 -3544 2599 2134 5 953 474 264 78 86 chr6 48337102 48337501 -101179536 - L1MEe LINE L1 -3832 2509 2248 5 953 287 281 266 0 chr6 48337582 48337721 -101179316 + B3A SINE B2 5 180 -18 5 953 35 24 0 0 chr6 48337759 48337801 -101179236 + AT_rich Low_complexity Low_complexity 1 42 0 5 953 240 222 82 82 chr6 48338013 48338111 -101178926 - RMER12 LTR ERVK -18 1304 1207 5 953 351 0 0 0 chr6 48338624 48338663 -101178374 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 5 953 512 295 55 106 chr6 48338880 48339053 -101177984 - MLT1B LTR MaLR 0 390 232 5 953 347 0 23 0 chr6 48339053 48339096 -101177941 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 953 512 295 55 106 chr6 48339096 48339214 -101177823 - MLT1B LTR MaLR -159 231 115 5 953 229 235 20 0 chr6 48339410 48339461 -101177576 + tRNA-Cys-TGY tRNA tRNA 22 73 -2 5 953 639 84 21 0 chr6 48339593 48339688 -101177349 + RMER4A LTR ERVK 1 97 -369 5 953 272 164 98 0 chr6 48339700 48339761 -101177276 + RMER4A LTR ERVK 400 466 0 5 953 3850 158 50 52 chr6 48339761 48340475 -101176562 + MurERV4-int LTR ERVK 1 715 -4545 5 953 1137 97 0 0 chr6 48340475 48340620 -101176417 + B1_Mm SINE Alu 3 147 0 5 953 3850 129 181 27 chr6 48340620 48341021 -101176016 + MurERV4-int LTR ERVK 716 1177 -4083 5 953 1514 135 0 0 chr6 48341523 48341753 -101175284 + MurERV4-int LTR ERVK 2954 3183 -2077 5 953 732 317 20 43 chr6 48341762 48342111 -101174926 - RLTR15 LTR ERVK -16 343 3 5 953 187 219 64 64 chr6 48342138 48342216 -101174821 - L4 LINE RTE -1829 200 123 5 953 1210 134 46 5 chr6 48342217 48342434 -101174603 + MurERV4-int LTR ERVK 3280 3505 -1755 5 953 471 298 241 28 chr6 48342471 48342564 -101174473 + L1M5 LINE L1 2341 2434 -3712 5 953 1547 199 34 20 chr6 48342564 48342918 -101174119 + RLTR15 LTR ERVK 1 359 0 5 953 471 298 241 28 chr6 48342918 48343073 -101173964 + L1M5 LINE L1 2435 2642 -3504 5 953 201 39 0 0 chr6 48343143 48343169 -101173868 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 953 412 264 122 16 chr6 48343221 48343344 -101173693 - RMER30 DNA MER1_type -38 164 29 5 953 637 156 8 62 chr6 48344065 48344195 -101172842 + B1_Mur3 SINE Alu 27 149 0 5 953 216 178 0 0 chr6 48344195 48344240 -101172797 + A-rich Low_complexity Low_complexity 3 47 0 5 953 238 190 128 23 chr6 48344937 48345023 -101172014 - RLTR1B LTR ERV1 -388 124 30 5 953 462 281 70 13 chr6 48347251 48347373 -101169664 - ID_B1 SINE B4 -162 130 2 5 953 251 306 51 58 chr6 48347639 48347795 -101169242 - MIRb SINE MIR -37 231 77 5 953 520 202 22 11 chr6 48348048 48348172 -101168865 + MLT1A1 LTR MaLR 249 389 -19 5 953 326 248 33 193 chr6 48348274 48348330 -101168707 - MLT1A1 LTR MaLR -12 396 346 5 953 631 194 92 15 chr6 48348330 48348461 -101168576 + B1_Mur2 SINE Alu 2 142 -7 5 953 326 248 33 193 chr6 48348461 48348554 -101168483 - MLT1A1 LTR MaLR -63 345 271 5 953 454 334 99 82 chr6 48348569 48348911 -101168126 - ORR1E LTR MaLR -1 358 11 5 953 873 347 77 29 chr6 48349883 48350278 -101166759 - MER68 LTR ERVL 0 607 145 5 953 2350 138 69 35 chr6 48350278 48350729 -101166308 - RMER4A LTR ERVK 0 466 1 5 953 873 345 79 28 chr6 48350729 48350867 -101166170 - MER68 LTR ERVL -419 144 3 5 953 287 0 0 50 chr6 48352182 48352222 -101164815 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 953 380 163 21 95 chr6 48354565 48354582 -101162455 + B4 SINE B4 77 164 -128 5 953 616 39 0 0 chr6 48354582 48354660 -101162377 + B1_Mus1 SINE Alu 1 78 -70 5 953 299 227 204 0 chr6 48354851 48354939 -101162098 + B3 SINE B2 2 107 -109 5 953 430 65 16 0 chr6 48354939 48355001 -101162036 + B1_Mus2 SINE Alu 85 147 0 5 953 832 116 65 0 chr6 48356532 48356670 -101160367 - URR1A DNA MER1_type 0 226 80 5 953 1323 77 44 0 chr6 48360273 48360454 -101156583 - B2_Mm2 SINE B2 -5 190 2 5 953 424 302 45 45 chr6 48361172 48361304 -101155733 - RSINE1 SINE B4 -14 151 20 5 953 195 204 0 0 chr6 48363169 48363213 -101153824 + (CCCCAG)n Simple_repeat Simple_repeat 6 49 0 5 953 327 294 0 0 chr6 48363866 48363934 -101153103 + ID4 SINE ID 10 77 -6 5 953 316 243 13 26 chr6 48365152 48365228 -101151809 - PB1D10 SINE Alu -1 116 42 5 954 619 288 59 16 chr6 48367381 48367568 -101149469 + RMER30 DNA MER1_type 7 201 -1 5 954 521 219 181 64 chr6 48368016 48368187 -101148850 + URR1A DNA MER1_type 1 191 -35 5 954 215 207 22 44 chr6 48369335 48369426 -101147611 + T-rich Low_complexity Low_complexity 3 91 0 5 954 372 324 104 32 chr6 48369449 48369758 -101147279 + L1M5 LINE L1 2499 2829 -3317 5 954 359 258 230 5 chr6 48369854 48370076 -101146961 + L1M5 LINE L1 3262 3533 -2613 5 954 307 306 72 108 chr6 48370186 48370409 -101146628 + L1MD LINE L1 3711 3925 -2221 5 954 425 185 28 30 chr6 48370866 48370967 -101146070 + B1_Mur1 SINE Alu 6 141 -8 5 954 297 219 5 90 chr6 48370892 48370993 -101146044 + ID_B1 SINE B4 146 247 -45 5 954 367 289 103 0 chr6 48371052 48371208 -101145829 + L2a LINE L2 3128 3299 -127 5 954 623 241 101 11 chr6 48371295 48371484 -101145553 - B3 SINE B2 -10 206 1 5 954 631 132 0 17 chr6 48371566 48371682 -101145355 + (GGGGA)n Simple_repeat Simple_repeat 4 117 0 5 954 1263 94 66 11 chr6 48371684 48371849 -101145188 + B2_Mm2 SINE B2 3 179 -16 5 954 1128 36 0 0 chr6 48371849 48371986 -101145051 + (GA)n Simple_repeat Simple_repeat 1 137 0 5 954 1059 196 39 14 chr6 48371986 48372193 -101144844 + B3 SINE B2 4 215 -1 5 954 1263 94 66 11 chr6 48372193 48372209 -101144828 + B2_Mm2 SINE B2 180 194 -1 5 954 491 271 85 0 chr6 48372212 48372341 -101144696 + ID_B1 SINE B4 80 219 -5 5 954 183 80 0 0 chr6 48372341 48372366 -101144671 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 5 954 344 326 11 11 chr6 48372849 48372942 -101144095 - PB1D10 SINE Alu -8 109 17 5 954 387 193 112 17 chr6 48373549 48373665 -101143372 - B1_Mur1 SINE Alu -18 131 5 5 954 307 89 67 0 chr6 48373916 48373961 -101143076 - ORR1D2 LTR MaLR 0 370 323 5 954 1724 198 46 6 chr6 48374019 48374344 -101142693 - ORR1D2 LTR MaLR -32 338 1 5 954 195 42 0 0 chr6 48374566 48374590 -101142447 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 954 1086 72 0 41 chr6 48374590 48374735 -101142302 - B1_Mus1 SINE Alu -9 139 1 5 954 317 75 19 0 chr6 48375163 48375216 -101141821 + (TCTG)n Simple_repeat Simple_repeat 1 54 0 5 954 408 185 0 0 chr6 48375217 48375282 -101141755 - B3A SINE B2 -41 157 93 5 954 350 236 139 87 chr6 48375332 48375504 -101141533 - MLT1E1A LTR MaLR -213 467 287 5 954 1095 260 14 28 chr6 48375637 48375926 -101141111 - B4A SINE B4 -6 286 2 5 954 874 191 0 0 chr6 48376373 48376514 -101140523 - B1_Mur1 SINE Alu -5 144 4 5 954 981 139 0 14 chr6 48376657 48376803 -101140234 + B1_Mur4 SINE Alu 2 145 -5 5 954 339 155 0 0 chr6 48376806 48376890 -101140147 + GA-rich Low_complexity Low_complexity 1 84 0 5 954 299 323 155 37 chr6 48377227 48377549 -101139488 + LTR16B1 LTR ERVL 67 426 -54 5 954 325 255 42 21 chr6 48377678 48377774 -101139263 + MLT1A1 LTR MaLR 309 406 -2 5 954 374 242 115 31 chr6 48378431 48378645 -101138392 + L1MA9 LINE L1 5693 5937 -363 5 954 21 36 0 0 chr6 48378731 48378759 -101138278 + AT_rich Low_complexity Low_complexity 1 28 0 5 954 636 167 0 0 chr6 48379733 48379835 -101137202 + B1_Mur1 SINE Alu 41 142 -7 5 954 444 281 124 69 chr6 48379991 48380325 -101136712 + MLT1B LTR MaLR 74 443 -24 5 954 481 177 79 9 chr6 48381131 48381245 -101135792 + L1MB4 LINE L1 5705 5826 -354 5 954 321 26 0 0 chr6 48381274 48381312 -101135725 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 5 954 358 230 218 0 chr6 48381323 48381410 -101135627 + RSINE1 SINE B4 6 111 -54 5 954 1092 289 73 90 chr6 48381536 48382205 -101134832 - RMER13A LTR ERVK -201 659 2 5 954 547 246 113 65 chr6 48382215 48382445 -101134592 + L1MB3 LINE L1 5778 6018 -165 5 954 2593 128 58 0 chr6 48382526 48382924 -101134113 + MTC LTR MaLR 1 421 0 5 954 222 312 0 36 chr6 48383901 48383984 -101133053 + L2c LINE L2 3254 3333 -54 5 954 183 42 0 0 chr6 48384163 48384187 -101132850 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 954 21 0 0 0 chr6 48384421 48384442 -101132595 + AT_rich Low_complexity Low_complexity 1 21 0 6 954 315 286 0 0 chr6 48384444 48384507 -101132530 - RSINE1 SINE B4 -7 158 96 6 954 354 277 29 10 chr6 48384593 48384695 -101132342 - B1F SINE Alu -23 126 23 6 954 351 283 86 34 chr6 48384741 48384858 -101132179 + MARNA DNA Mariner 276 398 -188 6 954 1102 223 202 32 chr6 48386311 48386680 -101130357 + MTD LTR MaLR 1 372 -7 6 954 202 312 143 25 chr6 48386878 48387039 -101129998 - MIR3 SINE MIR -28 180 1 6 954 354 98 0 0 chr6 48387357 48387408 -101129629 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 954 201 229 0 0 chr6 48389386 48389434 -101127603 + CT-rich Low_complexity Low_complexity 1 48 0 6 954 906 69 90 30 chr6 48390066 48390200 -101126837 + B1_Mus2 SINE Alu 1 142 -5 6 954 291 157 0 0 chr6 48390201 48390252 -101126785 + GA-rich Low_complexity Low_complexity 3 53 0 6 954 561 112 22 0 chr6 48390257 48390346 -101126691 + B1_Mus1 SINE Alu 35 125 -23 6 954 202 51 77 0 chr6 48390602 48390641 -101126396 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 6 954 352 343 40 60 chr6 48392307 48392586 -101124451 + L2a LINE L2 3122 3426 0 6 954 376 290 57 0 chr6 48392990 48393114 -101123923 + RSINE1 SINE B4 3 133 -32 6 954 207 100 0 0 chr6 48393162 48393192 -101123845 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 6 954 221 250 14 14 chr6 48394076 48394145 -101122892 + CT-rich Low_complexity Low_complexity 1 69 0 6 954 210 152 33 17 chr6 48394376 48394436 -101122601 + CT-rich Low_complexity Low_complexity 1 61 0 6 954 446 270 0 63 chr6 48394465 48394655 -101122382 + C-rich Low_complexity Low_complexity 2 179 0 6 954 221 323 0 47 chr6 48395090 48395259 -101121778 + C-rich Low_complexity Low_complexity 4 164 0 6 954 204 118 0 29 chr6 48396203 48396238 -101120799 + (CGGGG)n Simple_repeat Simple_repeat 1 34 0 6 954 293 244 129 32 chr6 48397640 48397733 -101119304 - B3A SINE B2 -95 103 2 6 954 314 336 14 43 chr6 48397827 48397967 -101119070 - MIR3 SINE MIR -67 141 6 6 954 230 234 62 49 chr6 48399357 48399438 -101117599 + MLT1M LTR MaLR 67 148 -524 6 954 315 0 0 0 chr6 48400249 48400284 -101116753 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 954 182 390 9 54 chr6 48400309 48400420 -101116617 - L4 LINE RTE -1446 583 478 6 954 377 179 51 45 chr6 48400484 48400660 -101116377 + (TATG)n Simple_repeat Simple_repeat 2 178 0 6 954 334 153 11 69 chr6 48400695 48400870 -101116167 + (TG)n Simple_repeat Simple_repeat 1 165 0 6 954 296 111 19 0 chr6 48401237 48401291 -101115746 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 6 954 296 24 24 0 chr6 48403589 48403630 -101113407 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 954 195 69 0 0 chr6 48403742 48403771 -101113266 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 954 266 194 0 16 chr6 48405931 48405994 -101111043 + G-rich Low_complexity Low_complexity 1 62 0 6 954 223 286 39 70 chr6 48406074 48406202 -101110835 - MIRc SINE MIR -28 240 117 6 954 1867 219 50 8 chr6 48406316 48406680 -101110357 - MTE2b LTR MaLR 0 379 1 6 954 200 296 55 27 chr6 48407970 48408043 -101108994 - MIRm SINE MIR -134 134 60 6 954 519 60 0 0 chr6 48409210 48409277 -101107760 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 6 954 701 257 33 39 chr6 48411176 48411358 -101105679 + B3A SINE B2 1 181 -17 6 954 207 240 20 0 chr6 48411362 48411412 -101105625 + (CATA)n Simple_repeat Simple_repeat 1 51 0 6 954 586 116 277 0 chr6 48412967 48413079 -101103958 - B1_Mus1 SINE Alu -1 147 5 6 954 198 136 0 0 chr6 48414697 48414741 -101102296 + (G)n Simple_repeat Simple_repeat 1 44 0 6 954 228 307 26 13 chr6 48419740 48419816 -101097221 + MIR SINE MIR 73 149 -59 6 954 191 156 44 0 chr6 48421281 48421326 -101095711 + (CCCA)n Simple_repeat Simple_repeat 3 49 0 6 954 318 26 0 0 chr6 48421391 48421430 -101095607 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 954 865 227 45 0 chr6 48421455 48421631 -101095406 - B3 SINE B2 -32 184 1 6 954 278 341 23 8 chr6 48421647 48421780 -101095257 + (TCCA)n Simple_repeat Simple_repeat 3 137 0 6 954 312 326 15 15 chr6 48421717 48421786 -101095251 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 6 954 209 33 33 0 chr6 48421786 48421816 -101095221 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 954 312 326 15 15 chr6 48421816 48421883 -101095154 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 6 954 587 189 0 8 chr6 48421905 48422038 -101094999 + (TCCA)n Simple_repeat Simple_repeat 1 132 0 6 954 258 274 21 21 chr6 48427068 48427165 -101089872 - Lx8 LINE L1 -1 7472 7376 6 954 358 274 29 0 chr6 48427176 48427278 -101089759 - Lx8 LINE L1 -164 7309 7205 6 954 510 140 0 0 chr6 48427280 48427380 -101089657 + (CA)n Simple_repeat Simple_repeat 2 101 0 6 954 266 341 12 0 chr6 48429758 48429840 -101087197 + ID4_ SINE ID 1 83 0 6 954 267 308 32 49 chr6 48429930 48430053 -101086984 - RMER12 LTR ERVK -466 856 736 6 954 558 304 192 17 chr6 48430055 48430343 -101086694 - MLT1B LTR MaLR -94 373 35 6 954 253 296 63 56 chr6 48431158 48431301 -101085736 + RMER17A LTR ERVK 142 285 -466 6 954 290 26 26 0 chr6 48431653 48431692 -101085345 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 954 285 160 78 24 chr6 48432442 48432547 -101084490 - MTEb LTR MaLR -216 163 1 6 954 186 103 0 0 chr6 48437469 48437498 -101079539 + (CTAAT)n Simple_repeat Simple_repeat 3 31 0 6 954 234 91 0 0 chr6 48437581 48437614 -101079423 + (TCCG)n Simple_repeat Simple_repeat 1 33 0 6 954 306 0 0 0 chr6 48437620 48437654 -101079383 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 954 576 95 0 0 chr6 48438148 48438232 -101078805 + (CCCCCG)n Simple_repeat Simple_repeat 6 89 0 6 954 2600 129 15 5 chr6 48439275 48439665 -101077372 - ORR1B1 LTR MaLR 0 394 1 6 954 571 261 36 14 chr6 48444357 48444497 -101072540 + B1F1 SINE Alu 2 144 -5 6 954 2626 165 82 6 chr6 48445349 48445873 -101071164 + RLTR12A LTR ERVK 1 564 -4 6 954 1008 105 1 7 chr6 48445873 48446037 -101071000 - L1M3de LINE L1 -2276 2224 2008 6 954 790 207 14 0 chr6 48447826 48447971 -101069066 + B3A SINE B2 2 148 -50 6 954 398 36 18 0 chr6 48447971 48448027 -101069010 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 954 549 208 112 75 chr6 48448027 48448068 -101068969 + B2_Mm2 SINE B2 137 194 -1 6 954 203 246 185 0 chr6 48451356 48451421 -101065616 + MIR3 SINE MIR 97 173 -35 6 954 342 45 0 0 chr6 48451582 48451626 -101065411 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 954 612 225 14 7 chr6 48451640 48451779 -101065258 - B1_Mur1 SINE Alu -7 142 3 6 954 235 280 0 51 chr6 48452066 48452145 -101064892 - L1M4 LINE L1 -277 5897 5823 6 954 247 275 12 0 chr6 48452197 48452277 -101064760 - L1M4 LINE L1 -321 5857 5777 6 954 326 241 16 107 chr6 48452318 48452395 -101064642 - L1M4 LINE L1 -410 5774 5698 6 954 1540 53 0 0 chr6 48452395 48452585 -101064452 - B2_Mm1t SINE B2 -3 190 1 6 954 326 241 16 107 chr6 48452585 48452628 -101064409 - L1M4 LINE L1 -487 5697 5665 6 954 455 282 78 56 chr6 48452632 48452772 -101064265 + B4A SINE B4 60 212 -80 6 954 2115 109 3 58 chr6 48452772 48453114 -101063923 - ORR1A2 LTR MaLR -4 323 1 6 954 455 282 78 56 chr6 48453114 48453153 -101063884 + B4A SINE B4 213 243 -49 6 954 1344 80 11 5 chr6 48453162 48453350 -101063687 + B2_Mm2 SINE B2 2 190 -5 6 954 405 0 0 0 chr6 48453359 48453404 -101063633 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 954 233 204 0 0 chr6 48453446 48453490 -101063547 + B4A SINE B4 192 235 -57 6 954 2322 154 39 37 chr6 48453526 48453991 -101063046 + RMER4A LTR ERVK 1 466 0 6 954 350 179 25 13 chr6 48454032 48454111 -101062926 + PB1D10 SINE Alu 7 86 -31 6 954 298 203 28 28 chr6 48455248 48455319 -101061718 - ID SINE ID -150 74 4 6 954 186 43 0 0 chr6 48455445 48455468 -101061569 + (C)n Simple_repeat Simple_repeat 1 23 0 6 954 689 121 161 0 chr6 48456143 48456267 -101060770 - ORR1B2 LTR MaLR -217 150 7 6 954 945 107 0 0 chr6 48456763 48456903 -101060134 + (TTTC)n Simple_repeat Simple_repeat 1 140 0 6 954 1088 44 0 0 chr6 48456904 48457039 -101059998 - B1_Mus1 SINE Alu -13 135 1 6 954 308 202 113 31 chr6 48457064 48457161 -101059876 - PB1D10 SINE Alu -1 116 12 6 954 513 269 38 15 chr6 48457449 48457581 -101059456 - RSINE1 SINE B4 -29 136 2 6 954 915 234 10 10 chr6 48457704 48457907 -101059130 + B3 SINE B2 1 203 -13 6 954 429 221 0 11 chr6 48459065 48459152 -101057885 - ID_B1 SINE B4 -31 193 108 6 954 243 296 28 0 chr6 48459141 48459212 -101057825 - ID2 SINE ID -10 73 1 6 954 228 345 7 47 chr6 48459493 48459642 -101057395 + Charlie8 DNA MER1_type 42 184 -2244 6 954 957 228 4 13 chr6 48459645 48459853 -101057184 - B3 SINE B2 -1 194 2 6 954 290 275 88 0 chr6 48460426 48460506 -101056531 + L2a LINE L2 3339 3425 -1 6 954 422 262 88 23 chr6 48461052 48461289 -101055748 + MER44A DNA MER2_type 3 338 -1 6 954 801 220 40 10 chr6 48462665 48462863 -101054174 - B3 SINE B2 0 216 1 6 954 230 265 0 0 chr6 48462879 48462928 -101054109 - MIR SINE MIR -31 231 183 6 954 195 42 0 0 chr6 48463091 48463115 -101053922 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 954 802 155 7 33 chr6 48463115 48463258 -101053779 - B1_Mur3 SINE Alu -9 140 1 6 954 1225 160 14 9 chr6 48465218 48465432 -101051605 - B3 SINE B2 0 216 2 6 954 259 274 41 0 chr6 48465504 48465577 -101051460 - ID2 SINE ID -6 77 2 6 954 2064 78 81 0 chr6 48466168 48466463 -101050574 + ORR1A2 LTR MaLR 1 319 -8 7 954 1834 128 125 0 chr6 48466835 48467154 -101049883 + ORR1B2 LTR MaLR 1 359 -8 7 954 2442 126 43 2 chr6 48467197 48467594 -101049443 - MTC LTR MaLR -8 413 1 7 954 250 246 0 0 chr6 48467850 48467915 -101049122 - ID4 SINE ID -17 66 2 7 954 1208 41 0 0 chr6 48468300 48468446 -101048591 + B1_Mus2 SINE Alu 2 147 0 7 954 197 98 24 0 chr6 48468447 48468488 -101048549 + (CAAAAA)n Simple_repeat Simple_repeat 5 46 0 7 954 347 157 52 68 chr6 48468503 48468615 -101048422 + PB1D10 SINE Alu 5 120 -29 7 954 499 285 54 15 chr6 48468693 48468896 -101048141 - MLT1E2 LTR MaLR -66 561 351 7 954 2184 300 142 31 chr6 48469171 48469272 -101047765 - Lx8 LINE L1 -9 7464 7332 7 954 279 0 0 0 chr6 48469272 48469303 -101047734 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 954 2184 300 142 31 chr6 48469303 48470374 -101046663 - Lx8 LINE L1 -142 7331 6162 7 954 484 274 8 25 chr6 48470399 48470519 -101046518 - RSINE1 SINE B4 -43 122 5 7 954 378 363 47 14 chr6 48471028 48471305 -101045732 - HAL1 LINE L1 -788 1719 1434 7 954 227 284 40 0 chr6 48471312 48471386 -101045651 + B3A SINE B2 14 90 -108 7 954 226 245 133 26 chr6 48471405 48471518 -101045519 + B3A SINE B2 71 195 -3 7 954 24 53 0 0 chr6 48471817 48471855 -101045182 + AT_rich Low_complexity Low_complexity 1 38 0 7 954 589 246 26 17 chr6 48471857 48472044 -101044993 - Lx5 LINE L1 -6 7052 6773 7 954 1063 134 37 11 chr6 48472187 48472376 -101044661 - B2_Mm2 SINE B2 0 195 2 7 954 339 25 0 0 chr6 48473885 48473925 -101043112 + (A)n Simple_repeat Simple_repeat 1 40 0 7 954 294 143 0 0 chr6 48474411 48474460 -101042577 + (A)n Simple_repeat Simple_repeat 1 49 0 7 954 869 189 128 0 chr6 48475174 48475354 -101041683 + B3 SINE B2 1 203 -13 7 954 709 193 119 10 chr6 48475375 48475569 -101041468 - B3 SINE B2 0 216 2 7 954 515 238 103 0 chr6 48475719 48475845 -101041192 + B1_Mur2 SINE Alu 2 140 -9 7 954 180 0 0 0 chr6 48475845 48475865 -101041172 + (ATG)n Simple_repeat Simple_repeat 2 21 0 7 954 294 50 0 0 chr6 48475977 48476017 -101041020 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 954 519 255 37 31 chr6 48476690 48476734 -101040303 - RSINE1 SINE B4 0 165 119 7 954 183 42 0 0 chr6 48476734 48476758 -101040279 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 954 519 255 37 31 chr6 48476758 48476875 -101040162 - RSINE1 SINE B4 -47 118 3 7 954 213 39 0 0 chr6 48477825 48477851 -101039186 + (TCTCC)n Simple_repeat Simple_repeat 4 29 0 7 954 467 238 83 50 chr6 48481681 48481862 -101035175 - MER20 DNA MER1_type -17 202 16 7 954 473 212 66 33 chr6 48484307 48484429 -101032608 - B1_Mur2 SINE Alu -23 126 1 7 954 946 171 324 8 chr6 48486361 48486620 -101030417 + MTEa LTR MaLR 27 367 -12 7 954 255 255 131 50 chr6 48488134 48488233 -101028804 + MIRb SINE MIR 80 186 -82 7 954 383 267 108 0 chr6 48488597 48488717 -101028320 + B3A SINE B2 28 160 -38 7 954 180 0 0 0 chr6 48488724 48488744 -101028293 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 954 1461 52 0 20 chr6 48489593 48489788 -101027249 - B2_Mm1t SINE B2 0 193 3 7 954 186 369 26 66 chr6 48492761 48492912 -101024125 - L2 LINE L2 -533 2886 2742 7 954 311 285 215 0 chr6 48493051 48493181 -101023856 + RSINE1 SINE B4 4 161 -4 7 954 414 167 0 0 chr6 48493193 48493277 -101023760 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 954 469 186 70 17 chr6 48493279 48493394 -101023643 - RLTR13D3 LTR ERVK 0 1114 994 7 954 392 346 24 5 chr6 48493779 48493988 -101023049 - RLTR3_Mm LTR ERVK -520 808 596 7 954 240 170 0 0 chr6 48494354 48494407 -101022630 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 954 228 365 45 45 chr6 48494429 48494607 -101022430 - MER67B LTR ERV1 -29 632 455 7 954 376 250 62 0 chr6 48494607 48494703 -101022334 + PB1D10 SINE Alu 1 102 -15 7 954 4221 114 81 3 chr6 48494703 48495386 -101021651 + RMER19A LTR ERVK 2 737 0 7 954 272 288 41 0 chr6 48495405 48495478 -101021559 + ID4_ SINE ID 2 77 -6 7 954 230 306 106 18 chr6 48495478 48495591 -101021446 - MER67B LTR ERV1 -191 470 348 7 954 489 76 0 0 chr6 48495596 48495662 -101021375 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 7 954 1153 55 7 0 chr6 48495674 48495820 -101021217 - B1_Mus2 SINE Alu 0 147 1 7 954 305 309 39 47 chr6 48495820 48495949 -101021088 - MER67B LTR ERV1 -308 353 226 7 954 402 21 0 0 chr6 48496497 48496544 -101020493 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 955 674 242 76 27 chr6 48497158 48497383 -101019654 + L1MA8 LINE L1 6003 6238 -53 7 955 330 26 0 0 chr6 48497425 48497464 -101019573 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 955 463 271 125 0 chr6 48497480 48497624 -101019413 - RSINE1 SINE B4 -1 164 3 7 955 252 348 40 66 chr6 48497830 48497981 -101019056 - MER20 DNA MER1_type -60 159 13 7 955 1106 171 42 75 chr6 48498849 48499114 -101017923 - ORR1E LTR MaLR -6 353 98 7 955 594 122 187 58 chr6 48499116 48499154 -101017883 - B2_Mm1t SINE B2 0 193 162 7 955 1143 68 0 13 chr6 48499154 48499293 -101017744 + B1_Mus1 SINE Alu 1 139 -9 7 955 645 14 0 0 chr6 48499293 48499367 -101017670 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 7 955 594 122 187 58 chr6 48499376 48499476 -101017561 - B2_Mm1t SINE B2 -32 161 37 7 955 621 161 18 18 chr6 48499479 48499593 -101017444 - ORR1E LTR MaLR -242 117 4 7 955 291 263 51 48 chr6 48499793 48499922 -101017115 + PB1D10 SINE Alu 11 149 0 7 955 272 343 0 0 chr6 48499933 48500000 -101017037 + B1F2 SINE Alu 13 79 -70 7 955 383 38 0 19 chr6 48500057 48500111 -101016926 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 955 688 164 289 6 chr6 48500521 48500687 -101016350 - RLTR20C LTR ERVK -321 213 1 2 955 998 264 85 22 chr6 48500687 48501000 -101016037 - MLT1A0 LTR MaLR -32 333 1 3 955 893 155 7 20 chr6 48501034 48501185 -101015852 + B1_Mur2 SINE Alu 1 149 0 4 955 248 304 32 65 chr6 48501344 48501467 -101015570 + L1ME2 LINE L1 6045 6163 -1 5 955 226 139 0 0 chr6 48501464 48501500 -101015537 + RMER1A Other Other 482 517 -513 6 955 1621 170 259 0 chr6 48501502 48501930 -101015107 + RMER1B Other Other 541 1065 -1 7 955 216 67 0 0 chr6 48501930 48501960 -101015077 + (GGA)n Simple_repeat Simple_repeat 2 31 0 8 955 280 268 63 118 chr6 48502683 48502810 -101014227 - RLTR24 LTR ERV1 -89 440 321 9 955 3400 177 85 83 chr6 48503012 48503802 -101013235 + RMER21A LTR ERV1 155 945 -2 1 955 1016 125 135 63 chr6 48505079 48505301 -101011736 - RLTR42 LTR ERVK 0 239 2 1 955 3935 92 21 19 chr6 48505369 48505415 -101011622 - RMER2 LTR ERV1 0 567 525 1 955 243 0 0 0 chr6 48505415 48505442 -101011595 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 955 3935 92 21 19 chr6 48505442 48505961 -101011076 - RMER2 LTR ERV1 -43 524 1 1 955 414 0 0 0 chr6 48507205 48507251 -101009786 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 955 2326 130 92 18 chr6 48507281 48507673 -101009364 + MTC LTR MaLR 1 421 0 1 955 352 213 65 26 chr6 48507731 48507808 -101009229 - ID4_ SINE ID -3 80 1 1 955 234 0 0 0 chr6 48507820 48507846 -101009191 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 955 739 90 27 9 chr6 48507851 48507963 -101009074 - B1_Mur3 SINE Alu 0 149 36 1 955 234 248 83 99 chr6 48507896 48508017 -101009020 - MT2B LTR ERVL -344 257 139 1 955 216 203 119 0 chr6 48507987 48508046 -101008991 - PB1D9 SINE Alu -23 97 32 2 955 1729 191 94 12 chr6 48509109 48509448 -101007589 - ORR1B2 LTR MaLR 0 367 1 2 955 5826 193 66 91 chr6 48509449 48509636 -101007401 - ORR1B2-int LTR MaLR -1 1508 1321 2 955 3497 141 108 14 chr6 48509636 48510256 -101006781 - RLTR33 LTR ERVK 0 678 1 2 955 5826 193 66 91 chr6 48510256 48510782 -101006255 - ORR1B2-int LTR MaLR -189 1320 905 2 955 3392 36 2 5 chr6 48510782 48511178 -101005859 - MTA_Mm LTR MaLR 0 396 2 2 955 5826 193 66 91 chr6 48511178 48511960 -101005077 - ORR1B2-int LTR MaLR -605 904 50 2 955 1502 259 47 43 chr6 48511970 48512579 -101004458 - MYSERV16_I-int LTR ERVK -1790 536 2 2 955 677 176 17 8 chr6 48512711 48512831 -101004206 - B1_Mur3 SINE Alu -6 143 23 2 955 1121 78 0 0 chr6 48512897 48513039 -101003998 + B1_Mus1 SINE Alu 1 142 -6 2 955 254 29 29 0 chr6 48513046 48513081 -101003956 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 2 955 33 66 0 0 chr6 48513138 48513199 -101003838 + AT_rich Low_complexity Low_complexity 1 61 0 2 955 296 279 15 0 chr6 48513324 48513392 -101003645 - B1_Mur2 SINE Alu -40 109 41 2 955 503 171 0 0 chr6 48513861 48513937 -101003100 + tRNA-Lys-AAG tRNA tRNA 1 76 0 3 955 1960 127 62 3 chr6 48513940 48514263 -101002774 - RLTR15 LTR ERVK 0 359 18 3 955 1766 151 157 3 chr6 48515150 48515463 -101001574 - ORR1B2 LTR MaLR -1 366 6 2 955 1692 230 110 9 chr6 48517602 48518067 -100998970 - RLTR18B LTR ERVK 0 512 1 3 955 720 23 0 0 chr6 48519084 48519170 -100997867 + (TC)n Simple_repeat Simple_repeat 2 87 0 3 955 387 0 0 0 chr6 48519593 48519636 -100997401 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 955 2007 199 8 14 chr6 48520401 48520768 -100996269 + ORR1D2 LTR MaLR 1 365 -5 3 955 337 295 57 0 chr6 48520844 48520949 -100996088 - PB1D10 SINE Alu -6 111 1 3 955 308 252 308 24 chr6 48521130 48521344 -100995693 - B4 SINE B4 -3 289 15 3 955 218 303 0 38 chr6 48521276 48521355 -100995682 - B3 SINE B2 -135 81 6 3 955 216 0 0 0 chr6 48521888 48521912 -100995125 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 3 955 216 0 0 0 chr6 48522814 48522838 -100994199 + (AGGGGG)n Simple_repeat Simple_repeat 5 28 0 4 955 31 0 0 0 chr6 48523856 48523887 -100993150 + AT_rich Low_complexity Low_complexity 1 31 0 4 955 382 147 250 10 chr6 48523894 48523990 -100993047 - Lx5 LINE L1 0 7050 6932 4 955 1032 180 44 24 chr6 48524601 48524806 -100992231 - B3 SINE B2 -7 209 1 4 955 234 250 0 0 chr6 48525040 48525112 -100991925 + CT-rich Low_complexity Low_complexity 2 73 0 4 955 750 221 0 0 chr6 48525125 48525261 -100991776 - B1_Mur1 SINE Alu -1 148 13 4 955 218 288 39 52 chr6 48525317 48525394 -100991643 + ID4_ SINE ID 2 77 -6 4 955 991 257 102 99 chr6 48525746 48526118 -100990919 - MTE2a LTR MaLR -6 373 1 4 955 21 57 0 0 chr6 48526468 48526503 -100990534 + AT_rich Low_complexity Low_complexity 1 35 0 4 955 384 294 109 71 chr6 48526528 48526711 -100990326 + B3A SINE B2 1 190 -5 4 955 348 289 10 0 chr6 48526692 48526789 -100990248 - Charlie5 DNA MER1_type -2521 103 6 5 955 1210 83 0 40 chr6 48527032 48527195 -100989842 + B2_Mm2 SINE B2 1 160 -35 5 955 339 25 0 0 chr6 48527195 48527235 -100989802 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 955 1210 83 0 40 chr6 48527235 48527246 -100989791 + B2_Mm2 SINE B2 161 168 -27 5 955 1184 120 21 11 chr6 48527257 48527443 -100989594 + B2_Mm2 SINE B2 3 190 -5 5 955 938 95 0 0 chr6 48527454 48527580 -100989457 + B1_Mus1 SINE Alu 2 127 -21 5 955 228 67 0 0 chr6 48527595 48527625 -100989412 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 955 340 252 53 38 chr6 48528047 48528144 -100988893 - RMER15-int LTR ERVL -2136 2863 2762 5 955 1162 142 136 5 chr6 48528144 48528342 -100988695 - URR1A DNA MER1_type 0 226 3 5 955 340 252 53 38 chr6 48528342 48528376 -100988661 - RMER15-int LTR ERVL -2238 2761 2730 5 955 436 239 35 9 chr6 48528385 48528499 -100988538 - RMER15-int LTR ERVL -2244 2755 2639 5 955 375 78 0 0 chr6 48528500 48528551 -100988486 + (TCC)n Simple_repeat Simple_repeat 2 52 0 5 955 214 205 24 0 chr6 48528592 48528675 -100988362 + CT-rich Low_complexity Low_complexity 2 86 0 5 955 2456 198 123 29 chr6 48528978 48529643 -100987394 - RLTR42-int LTR ERVK -44 5478 4751 6 955 207 0 0 0 chr6 48530083 48530106 -100986931 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 955 258 160 0 91 chr6 48530110 48530165 -100986872 - RLTR42-int LTR ERVK -4423 1099 1050 6 955 22 35 0 0 chr6 48530171 48530200 -100986837 + AT_rich Low_complexity Low_complexity 1 29 0 6 955 348 296 17 81 chr6 48530237 48530410 -100986627 - RLTR42-int LTR ERVK -4493 1029 868 6 955 423 0 0 0 chr6 48530455 48530502 -100986535 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 955 1558 277 63 39 chr6 48530502 48531152 -100985885 - RLTR42-int LTR ERVK -4824 698 33 6 955 400 257 45 9 chr6 48531548 48531658 -100985379 - RMER15-int LTR ERVL -2696 2303 2190 5 955 21 0 0 0 chr6 48531974 48531995 -100985042 + AT_rich Low_complexity Low_complexity 1 21 0 6 955 498 227 9 35 chr6 48532492 48532606 -100984431 - B4 SINE B4 -15 277 167 6 955 1005 266 95 90 chr6 48532976 48533344 -100983693 - ORR1D2 LTR MaLR 0 370 1 6 955 1333 99 0 6 chr6 48533623 48533805 -100983232 - B2_Mm2 SINE B2 -14 181 1 6 955 25 0 0 0 chr6 48533812 48533837 -100983200 + AT_rich Low_complexity Low_complexity 1 25 0 6 955 198 363 22 0 chr6 48534405 48534496 -100982541 - L2a LINE L2 -38 3388 3296 6 955 650 227 207 0 chr6 48534707 48534857 -100982180 + B3A SINE B2 1 181 -17 7 955 210 179 0 0 chr6 48534858 48534914 -100982123 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 955 23 0 0 0 chr6 48534932 48534955 -100982082 + AT_rich Low_complexity Low_complexity 1 23 0 7 955 251 200 36 0 chr6 48534975 48535030 -100982007 - MER67C LTR ERV1 -37 674 618 7 955 1485 169 29 7 chr6 48535073 48535347 -100981690 - Lx LINE L1 -3 6651 6372 7 955 1415 241 53 56 chr6 48535390 48535477 -100981560 + MTEa LTR MaLR 1 81 -298 7 955 1597 42 11 0 chr6 48535477 48535667 -100981370 + B2_Mm1t SINE B2 1 192 -1 7 955 1415 241 53 56 chr6 48535667 48535759 -100981278 + MTEa LTR MaLR 82 183 -196 7 955 4293 68 7 19 chr6 48535759 48536330 -100980707 + LTRIS2 LTR ERV1 1 564 0 7 955 1415 241 53 56 chr6 48536330 48536523 -100980514 + MTEa LTR MaLR 184 373 -6 7 955 320 289 13 0 chr6 48536581 48536657 -100980380 + MLT1A1 LTR MaLR 291 367 -41 7 955 516 216 53 18 chr6 48536663 48536776 -100980261 + PB1D10 SINE Alu 1 117 0 7 955 2261 182 40 2 chr6 48536806 48537230 -100979807 + RMER1B Other Other 577 1016 -50 8 955 312 306 92 55 chr6 48537232 48537450 -100979587 - MER67C LTR ERV1 -119 592 367 7 955 657 243 29 0 chr6 48537467 48537603 -100979434 - ID_B1 SINE B4 -8 216 77 8 955 426 296 112 72 chr6 48537595 48537926 -100979111 - MER67C LTR ERV1 -360 351 8 7 955 348 302 182 23 chr6 48537936 48538156 -100978881 + MLT1D LTR MaLR 133 387 -118 8 955 463 284 77 84 chr6 48538322 48538595 -100978442 - RLTR41 LTR ERV1 0 446 176 8 955 696 302 29 5 chr6 48538957 48539163 -100977874 + ID_B1 SINE B4 1 211 -13 8 955 261 0 0 0 chr6 48539166 48539195 -100977842 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 8 955 216 0 0 0 chr6 48539196 48539220 -100977817 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 955 546 16 0 0 chr6 48539721 48539784 -100977253 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 955 265 281 0 0 chr6 48539787 48539851 -100977186 - ID4 SINE ID -18 65 2 8 955 243 293 20 89 chr6 48539862 48539963 -100977074 - MT2B2 LTR ERVL -322 262 169 8 955 328 286 14 33 chr6 48539967 48540070 -100976967 - MLT1A1 LTR MaLR -18 390 261 9 955 234 0 0 0 chr6 48540586 48540612 -100976425 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 9 955 1181 57 0 0 chr6 48540614 48540755 -100976282 - B1_Mm SINE Alu -6 141 1 9 955 210 238 105 23 chr6 48540764 48540850 -100976187 - BC1_Mm scRNA scRNA -58 94 2 9 955 312 216 27 18 chr6 48540855 48540965 -100976072 - MER34A1 LTR ERV1 -232 355 242 9 955 237 246 54 68 chr6 48541042 48541116 -100975921 - MER34A1 LTR ERV1 -470 117 45 9 955 413 289 74 10 chr6 48541608 48541813 -100975224 + MIRb SINE MIR 13 234 -34 9 955 337 260 70 0 chr6 48542352 48542452 -100974585 + PB1D9 SINE Alu 2 108 -12 9 955 371 68 17 0 chr6 48542907 48542966 -100974071 + (TA)n Simple_repeat Simple_repeat 1 60 0 9 955 23 33 0 0 chr6 48543823 48543853 -100973184 + GC_rich Low_complexity Low_complexity 1 30 0 9 955 221 75 0 24 chr6 48548487 48548528 -100968509 + (TC)n Simple_repeat Simple_repeat 2 41 0 9 955 21 0 0 0 chr6 48548665 48548686 -100968351 + AT_rich Low_complexity Low_complexity 1 21 0 1 955 470 328 42 11 chr6 48548858 48549049 -100967988 - L3 LINE CR1 -107 4382 4186 1 955 1156 175 10 29 chr6 48549943 48550149 -100966888 - B3 SINE B2 -13 203 2 1 955 792 237 116 39 chr6 48550217 48550476 -100966561 + B4 SINE B4 1 279 -13 1 955 234 0 0 0 chr6 48550570 48550596 -100966441 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 955 293 299 0 85 chr6 48550596 48550702 -100966335 - ID_B1 SINE B4 -9 215 119 1 955 889 100 54 0 chr6 48553352 48553482 -100963555 + B1_Mur4 SINE Alu 3 139 -11 1 955 366 107 0 0 chr6 48553484 48553540 -100963497 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 955 198 174 0 0 chr6 48553634 48553680 -100963357 + GA-rich Low_complexity Low_complexity 1 46 0 1 955 345 238 32 146 chr6 48553683 48553805 -100963232 - RSINE1 SINE B4 -41 124 17 1 955 900 148 38 34 chr6 48553805 48554009 -100963028 - URR1A DNA MER1_type 0 226 1 1 955 207 0 0 0 chr6 48554308 48554331 -100962706 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 955 1178 44 7 0 chr6 48554331 48554468 -100962569 - B1_Mm SINE Alu -9 138 1 1 955 399 284 0 0 chr6 48554583 48554678 -100962359 - ID_B1 SINE B4 0 224 130 1 955 309 306 98 16 chr6 48554678 48554704 -100962333 - B1F2 SINE Alu 0 147 17 1 955 797 259 44 19 chr6 48554853 48555058 -100961979 - B3 SINE B2 -6 210 1 1 955 665 246 85 73 chr6 48555110 48555356 -100961681 - Tigger7 DNA MER2_type -4 2487 2239 1 955 2571 58 52 0 chr6 48555395 48555724 -100961313 + ORR1A1 LTR MaLR 1 346 0 1 955 10525 62 22 17 chr6 48555724 48556118 -100960919 + ORR1A1-int LTR MaLR 1 395 -1397 1 955 1248 41 0 0 chr6 48556118 48556265 -100960772 - B1_Mm SINE Alu 0 147 1 1 955 13299 61 28 14 chr6 48556265 48557637 -100959400 + ORR1A1-int LTR MaLR 395 1792 0 1 955 2892 64 0 0 chr6 48557637 48557983 -100959054 + ORR1A1 LTR MaLR 1 346 0 1 955 424 198 71 24 chr6 48558442 48558602 -100958435 - B3A SINE B2 -4 212 43 1 955 210 37 0 0 chr6 48559126 48559153 -100957884 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 1 955 450 0 0 0 chr6 48559813 48559863 -100957174 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 955 360 0 0 0 chr6 48559969 48560009 -100957028 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 955 229 314 38 9 chr6 48560852 48560958 -100956079 - MER67C LTR ERV1 -4 707 599 1 955 1248 251 64 17 chr6 48561069 48561156 -100955881 - MER67C LTR ERV1 -264 447 358 1 955 1387 61 50 0 chr6 48561156 48561336 -100955701 - B2_Mm2 SINE B2 -6 189 1 1 955 1248 251 64 17 chr6 48561336 48561608 -100955429 - MER67C LTR ERV1 -354 357 71 1 955 778 258 45 0 chr6 48562016 48562214 -100954823 + ID_B1 SINE B4 7 213 -11 1 955 225 297 108 15 chr6 48562684 48562749 -100954288 - ID4 SINE ID -8 75 5 1 955 1283 183 236 26 chr6 48564420 48564569 -100952468 - ORR1D1 LTR MaLR 0 374 185 1 955 342 0 0 0 chr6 48564569 48564607 -100952430 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 955 192 40 0 0 chr6 48564609 48564634 -100952403 + (CAGAGA)n Simple_repeat Simple_repeat 4 28 0 1 955 1283 183 236 26 chr6 48564634 48564790 -100952247 - ORR1D1 LTR MaLR -190 184 1 1 955 732 282 161 14 chr6 48565049 48565658 -100951379 - L1MC1 LINE L1 -121 6223 5479 1 955 921 248 61 102 chr6 48565837 48566228 -100950809 - MTE2a LTR MaLR -4 375 1 1 955 536 298 80 80 chr6 48566432 48566746 -100950291 - L1MC1 LINE L1 -1979 4167 3854 1 955 752 243 11 17 chr6 48567119 48567299 -100949738 - B3A SINE B2 -17 181 3 1 955 37 23 0 0 chr6 48567431 48567475 -100949562 + AT_rich Low_complexity Low_complexity 1 44 0 1 955 683 211 55 0 chr6 48567476 48567604 -100949433 - B1_Mur2 SINE Alu -14 135 1 1 955 1125 169 49 15 chr6 48567605 48567809 -100949228 - B3 SINE B2 -5 211 1 1 955 278 304 211 10 chr6 48568077 48568286 -100948751 - L1ME3A LINE L1 -32 6141 5891 1 955 227 326 107 48 chr6 48568525 48568628 -100948409 - MER68 LTR ERVL -266 297 189 1 955 360 344 45 15 chr6 48568637 48568770 -100948267 + RSINE1 SINE B4 4 140 -25 1 955 315 0 0 0 chr6 48568776 48568811 -100948226 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 955 26 0 0 0 chr6 48568831 48568857 -100948180 + AT_rich Low_complexity Low_complexity 1 26 0 1 955 198 166 80 0 chr6 48572441 48572592 -100944445 + (CCCTG)n Simple_repeat Simple_repeat 2 164 0 1 955 236 283 35 62 chr6 48574591 48574704 -100942333 - ORR1E LTR MaLR -162 197 88 1 955 843 128 258 16 chr6 48574748 48574930 -100942107 + URR1A DNA MER1_type 1 226 0 1 955 273 288 72 24 chr6 48575257 48575340 -100941697 - L2c LINE L2 -56 3370 3276 1 955 264 366 15 54 chr6 48575971 48576101 -100940936 + L2 LINE L2 447 571 -2848 1 955 243 318 44 82 chr6 48576192 48576398 -100940639 + MIRc SINE MIR 69 266 -2 1 955 204 158 0 0 chr6 48576453 48576491 -100940546 + (CTCA)n Simple_repeat Simple_repeat 1 38 0 1 955 458 210 109 0 chr6 48576502 48576621 -100940416 - B1_Mur1 SINE Alu -9 140 9 1 955 412 285 83 7 chr6 48578257 48578402 -100938635 + MIRc SINE MIR 39 194 -74 1 955 273 281 56 70 chr6 48580219 48580401 -100936636 + MIRm SINE MIR 48 226 -42 1 955 249 290 58 52 chr6 48583077 48583377 -100933660 + L2b LINE L2 3047 3375 -51 1 955 384 22 0 0 chr6 48584385 48584430 -100932607 + (TGG)n Simple_repeat Simple_repeat 3 47 0 1 955 262 263 141 0 chr6 48584479 48584578 -100932459 + MER5A1 DNA MER1_type 15 127 -39 1 955 408 40 0 0 chr6 48585758 48585808 -100931229 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 955 2336 120 52 26 chr6 48586020 48586404 -100930633 - ORR1B1 LTR MaLR 0 394 1 1 955 956 221 59 102 chr6 48586487 48586810 -100930227 - RLTR19-int LTR ERVK -1756 4381 4073 1 955 518 238 88 13 chr6 48587085 48587271 -100929766 + MTEa LTR MaLR 156 379 0 1 955 203 298 70 23 chr6 48588346 48588432 -100928605 - L4 LINE RTE -865 1164 1075 1 955 2673 177 104 84 chr6 48588660 48589258 -100927779 + RMER19C LTR ERVK 1 610 -1 1 955 229 277 66 47 chr6 48589584 48589690 -100927347 + MER34A LTR ERV1 396 503 -68 1 955 338 250 52 27 chr6 48590013 48590188 -100926849 + L1M5 LINE L1 2880 3057 -3089 1 955 224 289 67 67 chr6 48590201 48590305 -100926732 + PB1D10 SINE Alu 12 115 -2 1 955 349 297 134 5 chr6 48590780 48590981 -100926056 + L1M5 LINE L1 3604 3834 -2312 1 955 457 222 229 0 chr6 48591002 48591181 -100925856 + B4 SINE B4 3 222 -70 1 955 365 123 0 27 chr6 48591184 48591259 -100925778 + (CATA)n Simple_repeat Simple_repeat 2 74 0 1 955 260 219 106 30 chr6 48591264 48591330 -100925707 + B4 SINE B4 201 271 -21 1 955 478 292 92 33 chr6 48591626 48591810 -100925227 - Tigger5 DNA MER2_type -2211 195 1 1 955 350 100 0 16 chr6 48592244 48592305 -100924732 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 1 955 351 202 51 0 chr6 48592788 48592867 -100924170 - ID2 SINE ID 0 83 1 1 955 581 173 18 18 chr6 48593027 48593139 -100923898 - ORR1D1 LTR MaLR -262 112 1 1 955 457 140 21 41 chr6 48593140 48593237 -100923800 + ORR1D2 LTR MaLR 276 370 0 1 955 1266 185 169 11 chr6 48593667 48593951 -100923086 - RMER15 LTR ERVL -19 556 228 1 955 524 239 88 0 chr6 48594102 48594215 -100922822 + RSINE1 SINE B4 3 125 -40 1 955 570 215 0 0 chr6 48594896 48595026 -100922011 + GA-rich Low_complexity Low_complexity 6 135 0 1 955 592 146 0 37 chr6 48595533 48595640 -100921397 - PB1D9 SINE Alu 0 120 18 1 955 1489 230 46 46 chr6 48596680 48597095 -100919942 - MTD LTR MaLR -4 415 1 1 955 604 241 112 28 chr6 48598244 48598423 -100918614 - ERVL-B4-int LTR ERVL -824 4890 4697 1 955 1222 259 83 12 chr6 48598426 48599099 -100917938 - ERVL-B4-int LTR ERVL -1493 4268 3469 1 955 925 216 13 13 chr6 48599281 48599477 -100917560 - B3 SINE B2 -9 186 4 1 955 235 299 144 0 chr6 48599563 48599660 -100917377 - MLT1A1 LTR MaLR -294 114 4 1 955 330 286 21 32 chr6 48599664 48599758 -100917279 - MLT1A1-int LTR MaLR -1 1734 1642 1 955 251 253 104 26 chr6 48599945 48600022 -100917015 - B4 SINE B4 -113 179 97 1 955 216 263 35 17 chr6 48600026 48600084 -100916953 - ID2 SINE ID -22 61 3 1 955 1598 244 47 176 chr6 48601425 48602333 -100914704 - RMER19C LTR ERVK 0 902 1 1 955 5352 97 95 3 chr6 48602831 48603608 -100913429 + L1_Mus3 LINE L1 5787 6635 -3 1 955 24 32 0 0 chr6 48603630 48603661 -100913376 + AT_rich Low_complexity Low_complexity 1 31 0 1 955 327 320 88 0 chr6 48604473 48604620 -100912417 - Lx7 LINE L1 -1936 5760 5601 1 955 426 234 19 0 chr6 48604866 48605020 -100912017 + (TA)n Simple_repeat Simple_repeat 2 158 0 1 955 996 271 61 21 chr6 48605092 48605371 -100911666 - B4 SINE B4 -2 290 1 1 955 303 242 126 0 chr6 48605373 48605468 -100911569 - Lx7 LINE L1 -1947 5749 5643 1 955 511 213 44 0 chr6 48605545 48605681 -100911356 - L1ME2 LINE L1 -179 5985 5844 1 955 1204 281 14 11 chr6 48606812 48607089 -100909948 + B4 SINE B4 15 292 0 1 955 351 73 0 42 chr6 48607741 48607812 -100909225 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 955 34 0 0 0 chr6 48609758 48609792 -100907245 + AT_rich Low_complexity Low_complexity 1 34 0 1 955 30 0 0 0 chr6 48610840 48610870 -100906167 + AT_rich Low_complexity Low_complexity 1 30 0 1 955 326 296 0 0 chr6 48611021 48611109 -100905928 + PB1D10 SINE Alu 28 115 -2 1 955 6330 70 16 5 chr6 48611242 48612738 -100904299 - L1VL2 LINE L1 -1789 1826 314 1 955 1181 272 26 31 chr6 48612824 48613215 -100903822 - MTE2b LTR MaLR 0 379 1 1 955 250 261 11 11 chr6 48614150 48614243 -100902794 + URR1B DNA MER1_type 110 202 -23 1 955 501 248 58 0 chr6 48616453 48616574 -100900463 - RSINE1 SINE B4 -36 129 2 1 955 334 76 15 29 chr6 48616669 48616737 -100900300 + (TTTTTG)n Simple_repeat Simple_repeat 2 68 0 1 955 2202 27 114 0 chr6 48618315 48618577 -100898460 + RLTR10B LTR ERVK 1 292 0 1 955 197 33 33 0 chr6 48619362 48619392 -100897645 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 955 225 0 0 0 chr6 48619430 48619455 -100897582 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 955 549 155 19 37 chr6 48619455 48619562 -100897475 - B1_Mus2 SINE Alu -9 138 34 2 955 723 283 23 19 chr6 48620135 48620351 -100896686 - ID_B1 SINE B4 -7 217 1 2 955 268 273 29 29 chr6 48620698 48620766 -100896271 - ID4_ SINE ID -1 82 15 2 955 437 195 59 42 chr6 48620785 48620903 -100896134 - B1F SINE Alu -8 141 22 2 955 180 121 0 65 chr6 48620925 48620987 -100896050 + T-rich Low_complexity Low_complexity 2 59 0 2 955 895 195 16 21 chr6 48620995 48621184 -100895853 - B3A SINE B2 0 198 11 2 955 784 326 120 14 chr6 48621334 48621835 -100895202 - L1MC2 LINE L1 -176 6168 5615 2 955 1335 210 66 117 chr6 48621835 48622350 -100894687 - RMER19C LTR ERVK 0 737 175 2 955 4025 189 13 43 chr6 48622392 48623268 -100893769 - RMER13B LTR ERVK -59 849 1 2 955 839 199 26 16 chr6 48623269 48623458 -100893579 - RMER19C LTR ERVK -420 191 1 2 955 1086 272 50 12 chr6 48623458 48623800 -100893237 - L1MC2 LINE L1 -713 5620 5266 2 955 653 318 17 43 chr6 48623798 48624097 -100892940 + L1M2 LINE L1 4767 5057 -1086 2 955 265 306 89 66 chr6 48624273 48624486 -100892551 + MT2A LTR ERVL 125 342 -191 2 955 1185 41 14 0 chr6 48624565 48624710 -100892327 + B1_Mm SINE Alu 1 147 0 2 955 231 36 0 0 chr6 48624710 48624738 -100892299 + (A)n Simple_repeat Simple_repeat 1 28 0 2 955 260 283 0 0 chr6 48624988 48625041 -100891996 + MT2A LTR ERVL 344 396 -137 2 955 281 218 12 82 chr6 48625042 48625106 -100891931 + ID_B1 SINE B4 146 208 -16 2 955 1756 155 21 54 chr6 48625106 48625530 -100891507 + RMER17C LTR ERVK 1 410 0 2 955 281 218 12 82 chr6 48625530 48625550 -100891487 + ID_B1 SINE B4 209 224 0 2 955 22 0 0 0 chr6 48625567 48625589 -100891448 + AT_rich Low_complexity Low_complexity 1 22 0 2 955 2282 81 64 18 chr6 48625715 48626103 -100890934 - RLTR9F LTR ERVK -4 411 6 2 955 407 234 28 0 chr6 48626669 48626776 -100890261 - L1_Mur3 LINE L1 -1144 4736 4627 2 955 352 130 29 0 chr6 48626891 48626960 -100890077 + CT-rich Low_complexity Low_complexity 3 73 0 2 955 625 129 0 10 chr6 48626965 48627067 -100889970 - B1_Mur4 SINE Alu -9 141 41 2 956 27 0 0 0 chr6 48628352 48628379 -100888658 + AT_rich Low_complexity Low_complexity 1 27 0 2 956 251 242 152 43 chr6 48628641 48628779 -100888258 + RLTR43A LTR ERVK 210 362 -2 2 956 802 226 117 5 chr6 48628789 48628985 -100888052 - Lx8 LINE L1 -890 6583 6366 2 956 208 261 0 0 chr6 48629125 48629171 -100887866 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 2 956 1200 241 170 31 chr6 48629228 48629745 -100887292 - Lx9 LINE L1 -1 7643 7055 2 956 300 160 40 0 chr6 48629808 48629858 -100887179 - L1MB1 LINE L1 -314 5875 5824 2 956 674 247 36 0 chr6 48630011 48630177 -100886860 + B3A SINE B2 1 172 -26 2 956 342 0 0 0 chr6 48630191 48630229 -100886808 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 956 201 245 0 39 chr6 48630951 48631002 -100886035 + CT-rich Low_complexity Low_complexity 3 51 0 2 956 858 202 104 0 chr6 48631259 48631442 -100885595 - B3 SINE B2 -10 206 5 2 956 219 186 0 0 chr6 48632637 48632680 -100884357 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 2 956 632 158 7 27 chr6 48632757 48632907 -100884130 + GA-rich Low_complexity Low_complexity 6 152 0 2 956 891 324 128 25 chr6 48633043 48633297 -100883740 - Lx8 LINE L1 -4 7469 7217 2 956 303 28 0 0 chr6 48633297 48633333 -100883704 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 956 498 17 0 0 chr6 48633333 48633391 -100883646 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 956 891 322 94 19 chr6 48633391 48633635 -100883402 - Lx8 LINE L1 -257 7216 6898 2 956 1777 5 0 0 chr6 48633689 48633880 -100883157 + B2_Mm1a SINE B2 1 191 -2 2 956 198 133 0 77 chr6 48633912 48633977 -100883060 + CT-rich Low_complexity Low_complexity 2 61 0 2 956 279 0 0 0 chr6 48634019 48634050 -100882987 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 2 956 1275 41 0 6 chr6 48634050 48634210 -100882827 - B2_Mm1a SINE B2 -33 160 1 2 956 26 0 0 0 chr6 48634872 48634898 -100882139 + AT_rich Low_complexity Low_complexity 1 26 0 2 956 396 198 11 11 chr6 48637722 48637809 -100879228 - RCHARR1 DNA MER1_type 0 974 888 2 956 310 306 46 17 chr6 48637828 48638001 -100879036 + RCHARR1 DNA MER1_type 614 791 -183 2 956 347 259 189 18 chr6 48638151 48638320 -100878717 + L1MA7 LINE L1 6033 6230 -82 2 956 358 293 68 17 chr6 48638449 48638626 -100878411 - RCHARR1 DNA MER1_type -183 791 606 2 956 686 288 36 9 chr6 48638694 48638915 -100878122 - RCHARR1 DNA MER1_type -747 227 1 2 956 378 294 29 87 chr6 48639214 48639352 -100877685 - RMER10B LTR ERVL 0 398 269 2 956 32 0 0 0 chr6 48639945 48639977 -100877060 + AT_rich Low_complexity Low_complexity 1 32 0 2 956 983 254 85 50 chr6 48642232 48642514 -100874523 - B4 SINE B4 0 292 1 2 956 690 56 28 9 chr6 48642531 48642639 -100874398 - L1Md_A LINE L1 0 6582 6473 2 956 629 204 75 64 chr6 48642940 48643113 -100873924 + Lx9 LINE L1 6989 7163 -481 2 956 794 196 84 12 chr6 48643114 48643313 -100873724 - MTD LTR MaLR -23 396 177 2 956 3427 211 84 50 chr6 48643313 48643805 -100873232 - RMER1B Other Other -24 1042 541 2 956 186 43 0 0 chr6 48643805 48643828 -100873209 + (TGGGGG)n Simple_repeat Simple_repeat 6 28 0 2 956 3427 211 84 50 chr6 48643828 48644169 -100872868 - RMER1B Other Other -526 540 181 2 956 1331 259 13 16 chr6 48644195 48644505 -100872532 - RMER1B Other Other -714 352 44 2 956 293 234 117 0 chr6 48644541 48644618 -100872419 - MTD LTR MaLR -218 201 116 2 956 2696 122 358 12 chr6 48644625 48644886 -100872151 + RMER6C LTR ERVK 1 372 -318 2 956 234 116 0 0 chr6 48644886 48644929 -100872108 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 956 360 0 0 0 chr6 48644929 48644968 -100872069 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 956 2696 135 67 14 chr6 48644968 48645242 -100871795 + RMER6C LTR ERVK 373 641 -49 2 956 1641 129 88 0 chr6 48645242 48645536 -100871501 + IAPEY3_LTR LTR ERVK 1 320 -12 2 956 265 211 0 0 chr6 48645544 48645596 -100871441 + RMER6C LTR ERVK 703 754 -2 2 956 596 246 7 76 chr6 48645663 48645808 -100871229 - B3A SINE B2 -38 160 26 2 956 571 272 77 18 chr6 48645871 48646151 -100870886 - L1MA4A LINE L1 -280 6020 5736 2 956 227 258 194 0 chr6 48646292 48646354 -100870683 - B4A SINE B4 -3 289 216 2 956 542 300 33 0 chr6 48646370 48646520 -100870517 - RSINE1 SINE B4 0 165 11 2 956 515 130 111 31 chr6 48646731 48646852 -100870185 - B1_Mur4 SINE Alu -1 149 1 2 956 851 70 122 23 chr6 48646993 48647124 -100869913 + B1_Mus1 SINE Alu 5 148 0 2 956 21 0 0 0 chr6 48647124 48647145 -100869892 + AT_rich Low_complexity Low_complexity 1 21 0 2 956 314 23 23 0 chr6 48647153 48647196 -100869841 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 956 1509 189 153 31 chr6 48648102 48648494 -100868543 - RMER10A LTR ERVL -2 440 1 2 956 603 62 0 0 chr6 48651959 48652040 -100864997 + ORR1C1 LTR MaLR 298 378 0 2 956 1132 69 21 0 chr6 48653589 48653734 -100863303 + B1_Mus1 SINE Alu 1 148 0 2 956 569 254 22 7 chr6 48654604 48654743 -100862294 - RSINE1 SINE B4 -21 144 4 2 956 230 289 9 37 chr6 48656548 48656656 -100860381 + (CATA)n Simple_repeat Simple_repeat 3 107 0 2 956 517 225 0 24 chr6 48656707 48656830 -100860207 - Lx7 LINE L1 0 7696 7577 2 956 312 27 0 0 chr6 48656841 48656878 -100860159 + (TAA)n Simple_repeat Simple_repeat 3 39 0 2 956 379 211 196 74 chr6 48656878 48656899 -100860138 - Lx7 LINE L1 -215 7481 7459 2 956 183 80 0 0 chr6 48656899 48656924 -100860113 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 956 379 211 196 74 chr6 48656924 48657091 -100859946 - Lx7 LINE L1 -238 7458 7271 2 956 264 190 9 74 chr6 48657119 48657227 -100859810 + T-rich Low_complexity Low_complexity 2 102 0 2 956 26 0 0 0 chr6 48657299 48657325 -100859712 + AT_rich Low_complexity Low_complexity 1 26 0 2 956 200 323 40 8 chr6 48657348 48657473 -100859564 + (CATATA)n Simple_repeat Simple_repeat 5 133 0 2 956 183 164 49 0 chr6 48657671 48657732 -100859305 + (CATA)n Simple_repeat Simple_repeat 4 67 0 2 956 457 162 0 18 chr6 48657815 48657928 -100859109 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 956 333 262 18 36 chr6 48658505 48658616 -100858421 - Charlie12 DNA MER1_type -185 2688 2580 2 956 324 224 35 12 chr6 48658608 48658694 -100858343 - PB1D9 SINE Alu -6 114 27 2 956 504 277 67 30 chr6 48658713 48658747 -100858290 - B3A SINE B2 0 198 165 2 956 344 59 0 19 chr6 48658747 48658799 -100858238 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 956 504 277 67 30 chr6 48658799 48658928 -100858109 - B3A SINE B2 -34 164 29 2 956 1177 79 11 11 chr6 48658929 48659108 -100857929 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2 956 720 159 38 0 chr6 48659108 48659240 -100857797 - B1_Mur4 SINE Alu -5 145 9 2 956 1167 246 133 51 chr6 48659295 48659745 -100857292 - Charlie12 DNA MER1_type -278 2595 2109 2 956 1516 118 31 16 chr6 48659752 48660010 -100857027 + ORR1B1 LTR MaLR 4 265 -129 2 956 359 276 126 23 chr6 48660150 48660324 -100856713 - Charlie12 DNA MER1_type -1202 1671 1480 2 956 378 0 0 0 chr6 48660367 48660409 -100856628 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 956 270 0 0 0 chr6 48660416 48660446 -100856591 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 956 234 279 0 105 chr6 48660448 48660524 -100856513 - RSINE1 SINE B4 -4 161 94 2 956 230 340 190 0 chr6 48660691 48660791 -100856246 - Charlie12 DNA MER1_type -2356 517 399 2 956 316 269 0 0 chr6 48660812 48660879 -100856158 + RMER30 DNA MER1_type 20 86 -116 2 956 954 235 14 9 chr6 48660915 48661130 -100855907 + B3 SINE B2 1 216 0 2 956 495 172 15 15 chr6 48661859 48661989 -100855048 + C-rich Low_complexity Low_complexity 1 130 0 2 956 1052 102 0 13 chr6 48662380 48662529 -100854508 + B1_Mus1 SINE Alu 2 148 0 2 956 317 274 81 14 chr6 48662567 48662715 -100854322 - MIR SINE MIR -1 261 104 2 956 249 246 0 0 chr6 48663640 48663701 -100853336 - PB1D10 SINE Alu -6 111 51 2 956 256 275 22 0 chr6 48664128 48664219 -100852818 + MLT2C2 LTR ERVL 19 111 -286 2 956 751 244 92 42 chr6 48664248 48664509 -100852528 - Lx8 LINE L1 0 7473 7200 2 956 466 281 43 61 chr6 48664510 48664673 -100852364 + MLT2C2 LTR ERVL 99 258 -206 2 956 262 386 6 39 chr6 48664777 48664945 -100852092 + MLT2C2 LTR ERVL 245 406 -58 2 956 872 53 52 17 chr6 48664945 48665119 -100851918 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 956 694 298 50 15 chr6 48665194 48665453 -100851584 - MER2 DNA MER2_type -64 281 14 2 956 1485 317 60 5 chr6 48665808 48666588 -100850449 - L1M2 LINE L1 -867 5276 4454 2 956 1651 285 150 9 chr6 48666821 48667579 -100849458 + Lx8 LINE L1 6549 7413 -60 2 956 333 0 0 0 chr6 48667620 48667657 -100849380 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 956 424 351 90 72 chr6 48667987 48668377 -100848660 - LTR16A LTR ERVL -24 427 31 3 956 241 325 24 36 chr6 48669238 48669321 -100847716 - ID2 SINE ID 0 83 2 3 956 324 0 0 0 chr6 48670624 48670660 -100846377 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 956 225 0 0 0 chr6 48670726 48670751 -100846286 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3 956 216 0 0 0 chr6 48670784 48670808 -100846229 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 956 386 285 93 35 chr6 48672281 48672503 -100844534 - L1M5 LINE L1 -2339 3807 3573 3 956 475 217 43 94 chr6 48674522 48674687 -100842350 + MTEb LTR MaLR 204 379 0 3 956 294 174 122 68 chr6 48675403 48675551 -100841486 - RMER17C LTR ERVK -97 313 158 3 956 713 168 118 14 chr6 48675699 48675961 -100841076 + RMER17C LTR ERVK 1 463 -426 3 956 414 0 0 0 chr6 48676360 48676406 -100840631 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 956 420 20 0 0 chr6 48676406 48676454 -100840583 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 956 450 0 0 0 chr6 48676585 48676635 -100840402 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 956 248 288 14 0 chr6 48676726 48676799 -100840238 - ID4 SINE ID -5 78 5 3 956 279 71 0 0 chr6 48676799 48676841 -100840196 + (CTTG)n Simple_repeat Simple_repeat 1 42 0 3 956 466 207 0 12 chr6 48676864 48676947 -100840090 - PB1D10 SINE Alu -34 83 2 3 956 226 244 12 82 chr6 48676886 48676971 -100840066 + YREP_Mm Unknown Unknown 255 333 -1479 3 956 666 237 55 24 chr6 48676973 48677151 -100839886 - B3A SINE B2 -5 190 2 3 956 226 243 27 41 chr6 48677885 48677958 -100839079 - LTR52 LTR ERVL -69 352 281 3 956 1449 322 80 26 chr6 48679355 48680005 -100837032 - MTE-int LTR MaLR -895 685 1 3 956 521 251 35 1 chr6 48680046 48680163 -100836874 - B1F SINE Alu 0 117 1 3 956 270 236 50 109 chr6 48680290 48680409 -100836628 - ORR1E LTR MaLR -168 191 80 3 956 1721 285 81 40 chr6 48681045 48682333 -100834704 - L1M2 LINE L1 -351 5823 4489 3 956 318 26 0 0 chr6 48682333 48682372 -100834665 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 956 1721 293 81 46 chr6 48682372 48682483 -100834554 - L1M2 LINE L1 -1655 4488 4370 3 956 2445 79 9 6 chr6 48683312 48683645 -100833392 + L1_Mus3 LINE L1 6304 6637 -1 3 956 212 194 0 0 chr6 48683823 48683859 -100833178 + B3A SINE B2 9 44 -154 3 956 228 286 163 56 chr6 48684505 48684683 -100832354 - MLT1G LTR MaLR -91 500 304 3 956 1151 48 7 52 chr6 48685425 48685578 -100831459 + B1_Mm SINE Alu 1 146 -1 3 956 228 35 0 0 chr6 48685579 48685608 -100831429 + (CAAAAA)n Simple_repeat Simple_repeat 6 34 0 3 956 1073 215 0 64 chr6 48685690 48685909 -100831128 - B3 SINE B2 -11 205 1 3 956 509 246 21 21 chr6 48686829 48686970 -100830067 + B1F SINE Alu 1 141 -8 3 956 249 185 74 0 chr6 48687660 48687714 -100829323 - PB1D10 SINE Alu -43 74 17 3 956 756 318 92 43 chr6 48687823 48688194 -100828843 + LTR16A LTR ERVL 56 444 -7 3 956 355 326 92 33 chr6 48688264 48688448 -100828589 + L1M5 LINE L1 3850 4044 -2102 3 956 263 280 25 116 chr6 48688456 48688484 -100828553 - BC1_Mm scRNA scRNA -40 112 3 3 956 270 253 32 151 chr6 48688484 48688577 -100828460 - ID SINE ID -140 84 3 3 956 206 184 61 0 chr6 48688694 48688743 -100828294 + A-rich Low_complexity Low_complexity 1 52 0 3 956 213 39 0 0 chr6 48688751 48688777 -100828260 + (CCA)n Simple_repeat Simple_repeat 3 28 0 3 956 252 0 0 0 chr6 48688780 48688808 -100828229 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 956 198 0 0 0 chr6 48689461 48689483 -100827554 + (A)n Simple_repeat Simple_repeat 1 22 0 3 956 274 110 10 52 chr6 48690033 48690129 -100826908 + (CAAA)n Simple_repeat Simple_repeat 1 92 0 3 956 244 309 30 30 chr6 48691018 48691118 -100825919 - RSINE1 SINE B4 -38 127 28 3 956 525 256 58 0 chr6 48691761 48691882 -100825155 + RSINE1 SINE B4 2 129 -36 3 956 2571 84 120 0 chr6 48693470 48693837 -100823200 + RLTR10A LTR ERVK 1 411 0 3 956 232 194 198 31 chr6 48694045 48694141 -100822896 - Lx8 LINE L1 -3 7470 7359 3 956 722 300 81 7 chr6 48694137 48694422 -100822615 - Lx7 LINE L1 -421 7275 6970 3 956 223 191 0 0 chr6 48694890 48694932 -100822105 + (TAA)n Simple_repeat Simple_repeat 1 42 0 3 956 289 31 75 30 chr6 48694995 48695062 -100821975 + (CAAAAA)n Simple_repeat Simple_repeat 3 72 0 3 956 306 280 111 74 chr6 48695104 48695239 -100821798 + MER67C LTR ERV1 223 362 -349 3 956 220 319 128 48 chr6 48695319 48695335 -100821702 - B4 SINE B4 -73 219 86 3 956 336 283 65 10 chr6 48695335 48695443 -100821594 - B1F SINE Alu -5 115 1 3 956 210 209 0 44 chr6 48695507 48695552 -100821485 + polypyrimidine Low_complexity Low_complexity 2 44 0 3 956 289 318 0 0 chr6 48697112 48697200 -100819837 - RSINE1 SINE B4 -2 163 76 3 956 255 262 11 45 chr6 48698615 48698644 -100818393 + polypurine Low_complexity Low_complexity 1 28 0 3 956 1057 111 12 0 chr6 48698644 48698816 -100818221 + (GGGAA)n Simple_repeat Simple_repeat 5 178 0 3 956 255 262 11 45 chr6 48698816 48698874 -100818163 + polypurine Low_complexity Low_complexity 29 85 0 3 956 281 324 0 0 chr6 48700676 48700750 -100816287 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 956 3302 45 3 0 chr6 48700905 48701287 -100815750 - IAPEY_LTR LTR ERVK -1 384 2 3 956 1558 38 0 26 chr6 48701302 48701494 -100815543 + B2_Mm1t SINE B2 2 188 -5 3 956 216 45 43 43 chr6 48701542 48701589 -100815448 + (CAA)n Simple_repeat Simple_repeat 2 48 0 3 956 319 273 13 0 chr6 48701626 48701703 -100815334 - ID2 SINE ID -2 81 4 3 956 246 266 49 74 chr6 48702387 48702509 -100814528 + Charlie4z DNA MER1_type 48 166 -1 3 956 225 221 100 44 chr6 48704117 48704207 -100812830 - MER58B DNA MER1_type -168 173 79 3 956 574 296 57 0 chr6 48704234 48704393 -100812644 + B3A SINE B2 4 171 -27 3 956 528 16 0 0 chr6 48704399 48704460 -100812577 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 956 415 260 86 55 chr6 48704474 48704634 -100812403 + L1M2 LINE L1 4658 4828 -1315 3 956 3196 79 2 2 chr6 48704634 48705055 -100811982 - BGLII LTR ERVK 0 421 1 3 956 415 260 86 55 chr6 48705055 48705114 -100811923 + L1M2 LINE L1 4829 4884 -1259 3 956 225 234 10 78 chr6 48705169 48705196 -100811841 + L1_Mur3 LINE L1 4773 4797 -1083 3 956 3196 79 2 2 chr6 48705196 48705617 -100811420 - BGLII LTR ERVK 0 421 1 3 956 225 234 10 78 chr6 48705617 48705691 -100811346 + L1_Mur3 LINE L1 4798 4867 -1013 3 956 328 295 76 41 chr6 48705803 48705948 -100811089 + HAL1-3A_ME LINE L1 1975 2124 -734 3 956 804 275 70 22 chr6 48706108 48706449 -100810588 + LTRIS4 LTR ERV1 153 512 0 3 956 239 219 61 30 chr6 48706573 48706639 -100810398 + RLTR9A LTR ERVK 301 368 0 3 956 552 68 0 0 chr6 48707031 48707104 -100809933 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 956 5631 142 80 14 chr6 48707114 48708106 -100808931 + RMER16-int LTR ERVK 266 1322 -4084 3 956 266 333 0 0 chr6 48708120 48708231 -100808806 + RMER16-int LTR ERVK 349 459 -2855 3 956 3126 24 5 3 chr6 48708256 48708629 -100808408 + MTA_Mm LTR MaLR 23 396 0 3 956 518 145 47 47 chr6 48708630 48708758 -100808279 + RMER16-int LTR ERVK 1178 1383 -4023 3 956 759 221 14 0 chr6 48709147 48709287 -100807750 - ETnERV2-int LTR ERVK -204 7202 7061 3 956 1000 137 7 7 chr6 48709280 48709434 -100807603 + RMER16-int LTR ERVK 1415 1568 -3838 3 956 605 310 5 0 chr6 48709539 48709723 -100807314 + RMER16-int LTR ERVK 1415 1599 -1715 3 956 387 303 36 36 chr6 48709782 48710001 -100807036 + RMER16-int LTR ERVK 2162 2380 -3787 3 956 10952 109 39 14 chr6 48710020 48711720 -100805317 + RMER16-int LTR ERVK 1566 3292 -2114 3 956 1042 128 58 11 chr6 48711704 48711894 -100805143 + RMER16-int LTR ERVK 3502 3700 -1706 3 956 639 281 23 5 chr6 48711959 48712177 -100804860 + RLTR6-int LTR ERV1 7277 7498 -280 3 956 186 235 197 42 chr6 48712187 48712258 -100804779 + MIRb SINE MIR 20 101 -167 3 956 290 208 87 77 chr6 48712431 48712535 -100804502 + RMER16-int LTR ERVK 5241 5341 -65 3 956 906 225 34 75 chr6 48712545 48712931 -100804106 + RLTRETN_Mm LTR ERVK 44 393 0 3 956 792 265 132 40 chr6 48712931 48713257 -100803780 + RLTR9A LTR ERVK 2 357 -11 3 956 337 318 108 34 chr6 48713677 48713853 -100803184 - MLT1L LTR MaLR -249 361 173 3 956 613 45 22 0 chr6 48714138 48714227 -100802810 + (TC)n Simple_repeat Simple_repeat 1 91 0 3 956 775 227 8 0 chr6 48714736 48714868 -100802169 - ETnERV2-int LTR ERVK -204 7202 7070 3 956 261 343 30 20 chr6 48716902 48717003 -100800034 - MER81 DNA AcHobo -9 105 4 3 956 1322 177 252 110 chr6 48717385 48717425 -100799612 - MT2A LTR ERVL 0 533 494 3 956 297 0 0 0 chr6 48717425 48717458 -100799579 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 956 1322 177 252 110 chr6 48717458 48717861 -100799176 - MT2A LTR ERVL -40 493 27 3 956 1141 51 29 0 chr6 48717935 48718073 -100798964 + B1_Mus1 SINE Alu 1 142 -6 3 956 441 0 0 0 chr6 48718075 48718124 -100798913 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 3 956 27 0 0 0 chr6 48718253 48718280 -100798757 + AT_rich Low_complexity Low_complexity 1 27 0 3 956 287 311 81 62 chr6 48718280 48718441 -100798596 + MLT2C2 LTR ERVL 383 546 -13 3 956 219 36 0 0 chr6 48719162 48719190 -100797847 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 956 558 212 36 36 chr6 48719638 48719653 -100797384 + ID_B1 SINE B4 78 214 -10 3 956 974 49 0 0 chr6 48719653 48719775 -100797262 + B1_Mus2 SINE Alu 16 137 -10 3 956 207 0 0 0 chr6 48719775 48719798 -100797239 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 956 387 0 0 0 chr6 48720580 48720623 -100796414 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 956 578 289 0 0 chr6 48721476 48721611 -100795426 - B3 SINE B2 -1 215 81 3 956 190 27 0 98 chr6 48721767 48721791 -100795246 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 3 956 1062 44 51 14 chr6 48721791 48721929 -100795108 - B1_Mus1 SINE Alu -5 143 1 3 956 190 27 0 98 chr6 48721929 48721945 -100795092 + (TTTTG)n Simple_repeat Simple_repeat 4 18 0 4 956 663 262 54 73 chr6 48722349 48722615 -100794422 - B4A SINE B4 -21 271 1 4 956 1371 282 120 10 chr6 48722694 48723271 -100793766 + L1MC2 LINE L1 5673 6312 -32 4 956 747 190 160 16 chr6 48723271 48723458 -100793579 + B3 SINE B2 1 214 -2 4 956 22 35 0 0 chr6 48723482 48723511 -100793526 + AT_rich Low_complexity Low_complexity 1 29 0 4 956 687 255 31 41 chr6 48723718 48723914 -100793123 - B3A SINE B2 -3 195 2 4 956 512 234 35 18 chr6 48724386 48724499 -100792538 + B1_Mur1 SINE Alu 22 136 -13 4 956 249 33 0 0 chr6 48724499 48724529 -100792508 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4 956 2639 68 18 0 chr6 48724713 48725051 -100791986 + L1Md_F2 LINE L1 6003 6346 -236 4 956 1168 179 62 40 chr6 48725059 48725332 -100791705 + RLTR46 LTR ERVK 42 320 0 4 956 534 206 29 126 chr6 48725332 48725538 -100791499 + IAPEY3-int LTR ERVK 1 186 -7494 4 956 5122 232 53 3 chr6 48725534 48726693 -100790344 + IAPEY3-int LTR ERVK 535 1751 -5929 4 956 10596 205 9 8 chr6 48726702 48728950 -100788087 + IAPEY3-int LTR ERVK 3542 5810 -1771 4 956 4294 114 9 7 chr6 48728941 48729943 -100787094 + IAPEY3-int LTR ERVK 6651 7680 0 4 956 1226 163 64 34 chr6 48729952 48730218 -100786819 + RLTR46 LTR ERVK 42 315 -5 4 956 1927 39 4 0 chr6 48730220 48730452 -100786585 + L1Md_F2 LINE L1 6335 6567 -15 4 956 501 288 183 48 chr6 48730468 48730995 -100786042 + L1M5 LINE L1 2203 2803 -3343 4 956 1918 145 3 3 chr6 48732239 48732557 -100784480 - MTC LTR MaLR 0 421 104 4 956 427 186 0 40 chr6 48732557 48732658 -100784379 - RMER20B LTR ERVK -1 626 530 4 956 503 168 18 27 chr6 48732673 48732783 -100784254 + HY1 scRNA scRNA 2 110 -2 4 956 1211 123 46 5 chr6 48732781 48732977 -100784060 + RLTR23 LTR ERV1 227 430 0 4 956 2346 165 40 72 chr6 48732977 48733520 -100783517 - RMER20B LTR ERVK -92 535 10 4 956 685 148 0 0 chr6 48733526 48733634 -100783403 - MTC LTR MaLR -313 108 1 4 956 232 325 0 12 chr6 48733638 48733722 -100783315 - BC1_Mm scRNA scRNA -64 88 6 4 956 964 149 54 10 chr6 48734623 48734827 -100782210 - ORR1B2 LTR MaLR -130 237 25 4 956 485 303 22 22 chr6 48734834 48735057 -100781980 + RLTR14-int LTR ERV1 4952 5174 -143 4 956 235 217 0 0 chr6 48735752 48735798 -100781239 - Lx8 LINE L1 -1038 6435 6390 4 956 2024 187 47 12 chr6 48736153 48736559 -100780478 - MTC LTR MaLR 0 421 2 4 956 25 0 0 0 chr6 48736697 48736722 -100780315 + AT_rich Low_complexity Low_complexity 1 25 0 4 956 3845 160 155 80 chr6 48736926 48737233 -100779804 - RLTR25A LTR ERVK 0 1103 688 4 956 1250 48 0 0 chr6 48737233 48737380 -100779657 - B1_Mus1 SINE Alu 0 148 2 4 956 3845 160 155 80 chr6 48737380 48738098 -100778939 - RLTR25A LTR ERVK -416 687 1 4 956 230 244 11 58 chr6 48738292 48738379 -100778658 - RLTR12B LTR ERVK -79 449 367 4 956 642 226 98 49 chr6 48738421 48738667 -100778370 - RLTR12B LTR ERVK -244 284 27 4 956 250 271 170 40 chr6 48738836 48739059 -100777978 - Lx9 LINE L1 -66 7578 7327 4 956 556 292 0 13 chr6 48739484 48739640 -100777397 - Lx9 LINE L1 -312 7332 7179 4 956 1610 309 35 28 chr6 48739646 48740216 -100776821 - Lx9 LINE L1 -685 6959 6386 4 956 24 0 0 0 chr6 48741006 48741030 -100776007 + AT_rich Low_complexity Low_complexity 1 24 0 4 956 1990 209 11 201 chr6 48744601 48745351 -100771686 + RMER19C LTR ERVK 3 609 -2 4 956 338 118 0 0 chr6 48746739 48746790 -100770247 + RMER6B LTR ERVK 11 61 -400 4 956 397 176 29 0 chr6 48747136 48747238 -100769799 + (TATATG)n Simple_repeat Simple_repeat 4 108 0 4 956 9213 2 0 0 chr6 48749330 48750693 -100766344 - L1Md_A LINE L1 0 6582 5220 4 956 183 139 0 0 chr6 48751315 48751351 -100765686 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 956 200 167 20 20 chr6 48751619 48751668 -100765369 + T-rich Low_complexity Low_complexity 2 50 0 4 956 1119 118 11 16 chr6 48751673 48751863 -100765174 + L1_Mus3 LINE L1 6450 6638 0 4 956 1832 148 43 0 chr6 48751885 48752210 -100764827 - ORR1B2 LTR MaLR -28 339 1 4 956 1901 154 17 50 chr6 48752210 48752755 -100764282 - ORR1B2-int LTR MaLR -58 1905 880 4 956 1289 172 18 0 chr6 48752755 48752976 -100764061 + URR1B DNA MER1_type 1 225 0 4 956 1901 188 11 16 chr6 48752976 48753024 -100764013 - ORR1B2-int LTR MaLR -630 879 836 4 956 3120 152 142 12 chr6 48753024 48753623 -100763414 - RLTR33 LTR ERVK 0 678 2 4 956 2865 207 72 29 chr6 48753784 48754512 -100762525 - ORR1B2-int LTR MaLR -672 837 75 4 956 4572 118 80 17 chr6 48754512 48755273 -100761764 - RMER17D2 LTR ERVK 0 809 1 4 956 2865 207 72 29 chr6 48755273 48755344 -100761693 - ORR1B2-int LTR MaLR -1435 74 3 4 956 491 109 0 19 chr6 48755350 48755441 -100761596 - ORR1B2 LTR MaLR -8 386 234 4 956 278 219 36 54 chr6 48756527 48756638 -100760399 + RMER16-int LTR ERVK 3177 3285 -2121 4 956 23 0 0 0 chr6 48756729 48756752 -100760285 + AT_rich Low_complexity Low_complexity 1 23 0 4 956 1226 147 0 5 chr6 48756768 48756959 -100760078 - B2_Mm2 SINE B2 -4 191 2 4 956 825 141 0 15 chr6 48757046 48757183 -100759854 + B1_Mur4 SINE Alu 9 143 -7 4 119 3125 141 6 0 chr6 48758337 48758828 -100758209 + RLTR19 LTR ERVK 6 499 0 4 957 501 276 119 9 chr6 48759785 48760004 -100757033 + L1MC4a LINE L1 6329 6571 -1311 4 957 603 301 124 41 chr6 48760065 48760519 -100756518 + MLT2B3 LTR ERVL 14 505 -15 4 957 797 302 120 12 chr6 48760845 48761187 -100755850 + MTEa LTR MaLR 1 379 0 4 957 380 208 16 23 chr6 48761384 48761512 -100755525 + CT-rich Low_complexity Low_complexity 3 129 0 4 957 1418 224 66 40 chr6 48761561 48761956 -100755081 - MTD LTR MaLR -14 405 1 4 957 920 299 139 18 chr6 48761988 48762434 -100754603 + Charlie2a DNA MER1_type 1709 2220 -641 4 957 411 21 0 0 chr6 48762434 48762482 -100754555 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 957 920 299 139 18 chr6 48762482 48762603 -100754434 + Charlie2a DNA MER1_type 2221 2345 -516 4 957 640 98 16 16 chr6 48762635 48762759 -100754278 - ORR1B2 LTR MaLR -243 124 1 4 957 286 264 80 64 chr6 48762933 48763184 -100753853 + Charlie2a DNA MER1_type 2528 2782 -79 4 957 2867 29 14 3 chr6 48763715 48764064 -100752973 + L1Md_F3 LINE L1 6230 6582 -2 4 957 1900 165 119 3 chr6 48764702 48765079 -100751958 + MTC LTR MaLR 1 421 0 4 957 813 160 98 23 chr6 48765079 48765252 -100751785 + B3A SINE B2 2 187 -11 4 957 666 236 107 10 chr6 48765281 48765478 -100751559 + B3 SINE B2 1 216 0 4 957 2838 68 52 0 chr6 48765493 48765862 -100751175 - RLTR10 LTR ERVK -2 388 1 4 957 286 239 65 11 chr6 48766936 48767029 -100750008 + PB1D7 SINE Alu 23 120 0 4 957 237 65 0 0 chr6 48768160 48768191 -100748846 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 957 556 257 144 21 chr6 48768203 48768390 -100748647 - ID_B1 SINE B4 -13 211 2 4 957 822 21 0 0 chr6 48769583 48769679 -100747358 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 4 957 209 59 59 0 chr6 48769726 48769760 -100747277 + (GGGTG)n Simple_repeat Simple_repeat 4 39 0 4 957 1020 138 0 0 chr6 48769956 48770123 -100746914 + (TC)n Simple_repeat Simple_repeat 2 168 0 4 957 1131 84 0 0 chr6 48770123 48770266 -100746771 - B1_Mus2 SINE Alu -1 146 4 4 957 671 183 34 27 chr6 48770686 48770832 -100746205 - B1_Mur3 SINE Alu -2 147 1 4 957 4968 46 2 0 chr6 48771005 48771591 -100745446 + LTRIS_Mus LTR ERV1 1 587 0 4 957 201 39 0 0 chr6 48771688 48771714 -100745323 + (CTTA)n Simple_repeat Simple_repeat 4 29 0 4 957 2257 216 136 72 chr6 48772037 48772246 -100744791 + RLTR13D1 LTR ERVK 1 219 -804 4 957 1219 103 6 17 chr6 48772246 48772408 -100744629 + B2_Mm1a SINE B2 1 162 -31 4 957 204 40 0 0 chr6 48772408 48772433 -100744604 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 4 957 1219 103 6 17 chr6 48772433 48772447 -100744590 + B2_Mm1a SINE B2 163 175 -18 4 957 2733 151 109 30 chr6 48772447 48773198 -100743839 + RLTR13D1 LTR ERVK 220 1023 0 4 957 27 0 0 0 chr6 48773246 48773273 -100743764 + AT_rich Low_complexity Low_complexity 1 27 0 4 957 270 322 125 39 chr6 48774701 48774982 -100742055 + MER57C2 LTR ERV1 71 375 -59 4 957 973 277 82 34 chr6 48775762 48776289 -100740748 + L1M2 LINE L1 2400 2951 -3192 4 957 495 226 21 63 chr6 48776342 48776484 -100740553 - RSINE1 SINE B4 -25 140 5 4 957 287 270 0 0 chr6 48776547 48776621 -100740416 + Lx8 LINE L1 7398 7471 -2 4 957 566 279 69 43 chr6 48776805 48777037 -100740000 - L1M2 LINE L1 -518 5782 5545 4 957 444 265 9 106 chr6 48777043 48777293 -100739744 + L1M2 LINE L1 4636 4858 -1028 4 957 294 29 0 0 chr6 48777367 48777402 -100739635 + (TATG)n Simple_repeat Simple_repeat 2 36 0 4 957 234 0 0 0 chr6 48777523 48777549 -100739488 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 957 246 62 0 0 chr6 48777624 48777656 -100739381 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 957 25 51 0 0 chr6 48777915 48777954 -100739083 + AT_rich Low_complexity Low_complexity 1 39 0 4 957 1756 283 45 33 chr6 48777987 48778591 -100738446 - Lx8 LINE L1 -33 7440 6830 4 957 278 179 83 19 chr6 48779555 48779663 -100737374 + (CAGAGA)n Simple_repeat Simple_repeat 4 118 0 4 957 1581 226 30 18 chr6 48779850 48780188 -100736849 - MTD LTR MaLR -77 342 1 4 957 209 195 0 24 chr6 48780274 48780316 -100736721 + G-rich Low_complexity Low_complexity 3 43 0 4 957 950 198 15 35 chr6 48780929 48781128 -100735909 + B3A SINE B2 3 197 -1 4 957 1181 295 43 19 chr6 48782217 48782639 -100734398 + RMER15 LTR ERVL 40 561 -14 4 957 328 258 11 63 chr6 48782790 48782885 -100734152 - MLT1B LTR MaLR -300 90 1 4 957 1196 228 59 82 chr6 48783382 48783722 -100733315 + MTE2b LTR MaLR 22 353 -26 4 957 350 344 66 52 chr6 48784781 48785069 -100731968 + MLT1G3 LTR MaLR 163 454 -141 4 957 396 40 0 0 chr6 48785118 48785168 -100731869 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 957 531 339 52 0 chr6 48786731 48786905 -100730132 + ID_B1 SINE B4 42 224 0 4 957 272 288 36 62 chr6 48788600 48788775 -100728262 + ORR1D2 LTR MaLR 21 190 -184 4 957 313 303 61 14 chr6 48789044 48789191 -100727846 - L1MC LINE L1 -2036 5846 5693 4 957 332 282 73 113 chr6 48789403 48789488 -100727549 + MT2B2 LTR ERVL 84 160 -424 4 957 832 193 14 0 chr6 48789488 48789633 -100727404 + B1_Mur1 SINE Alu 3 149 0 4 957 483 281 17 17 chr6 48795635 48795766 -100721271 - PB1D10 SINE Alu -9 140 1 4 957 237 299 57 11 chr6 48796026 48796114 -100720923 - MER68 LTR ERVL -46 517 426 4 957 463 108 36 0 chr6 48796258 48796341 -100720696 + (TCTCCC)n Simple_repeat Simple_repeat 5 90 0 4 957 229 246 60 30 chr6 48796354 48796421 -100720616 - MER68 LTR ERVL -349 214 146 4 957 359 305 82 103 chr6 48797070 48797264 -100719773 + B3A SINE B2 3 192 -6 4 957 365 294 41 25 chr6 48797622 48797744 -100719293 + MLT1J LTR MaLR 3 126 -386 4 957 517 152 13 0 chr6 48798061 48798140 -100718897 + B3 SINE B2 2 81 -135 5 957 302 290 68 29 chr6 48798140 48798164 -100718873 + RSINE1 SINE B4 3 109 -56 5 957 2118 126 28 11 chr6 48798164 48798517 -100718520 - RLTR15 LTR ERVK 0 359 1 5 957 3233 132 78 55 chr6 48798553 48798812 -100718225 + RMER6A LTR ERVK 86 383 -373 5 957 468 0 0 0 chr6 48798812 48798864 -100718173 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 957 3233 132 78 55 chr6 48798864 48799260 -100717777 + RMER6A LTR ERVK 384 755 -1 5 957 382 202 190 10 chr6 48799266 48799366 -100717671 + B3 SINE B2 99 216 0 5 957 1049 306 66 6 chr6 48800905 48801392 -100715645 + L1M2 LINE L1 4752 5267 -876 5 957 2663 97 23 106 chr6 48801392 48801922 -100715115 + RMER17A LTR ERVK 266 751 0 5 957 4074 60 31 2 chr6 48801922 48802444 -100714593 + RMER17A-int LTR ERVK 1 537 -1191 5 957 7824 58 47 8 chr6 48802429 48803463 -100713574 + RMER17A-int LTR ERVK 654 1728 0 5 957 2833 80 66 0 chr6 48803463 48803889 -100713148 + RMER17A LTR ERVK 1 454 -297 5 957 801 174 7 35 chr6 48803979 48804122 -100712915 - B1_Mur4 SINE Alu -11 139 1 5 957 261 218 81 0 chr6 48804122 48804209 -100712828 + L1M5 LINE L1 5337 5430 -734 5 957 639 264 30 30 chr6 48804240 48804408 -100712629 + B3A SINE B2 25 192 -6 5 957 749 282 41 37 chr6 48804415 48804684 -100712353 + L1M2 LINE L1 5428 5697 -606 5 957 314 306 22 88 chr6 48804927 48805063 -100711974 + L1MEf LINE L1 1579 1705 -4928 5 957 406 314 89 41 chr6 48805256 48805625 -100711412 + L1MEf LINE L1 2115 2501 -4132 5 957 401 292 40 15 chr6 48805745 48805943 -100711094 + L1MEf LINE L1 2603 2805 -3732 5 957 410 224 195 77 chr6 48805949 48806118 -100710919 + B3A SINE B2 3 191 -7 5 957 1100 237 0 0 chr6 48806123 48806338 -100710699 + B3 SINE B2 2 216 0 5 957 642 244 67 0 chr6 48806717 48806852 -100710185 + RSINE1 SINE B4 3 146 -19 5 957 336 345 49 33 chr6 48808763 48808946 -100708091 + L1M5 LINE L1 5079 5264 -882 5 957 290 273 98 53 chr6 48809091 48809295 -100707742 + L1MEf LINE L1 5746 5965 -785 5 957 383 272 0 52 chr6 48809933 48810030 -100707007 + PB1 SINE Alu 33 124 -3 5 957 553 213 19 0 chr6 48811007 48811115 -100705922 - PB1D7 SINE Alu -5 115 6 5 957 270 261 208 14 chr6 48811733 48811877 -100705160 + LTR33 LTR ERVL 344 515 0 5 957 504 250 70 18 chr6 48812373 48812487 -100704550 + B1F SINE Alu 22 141 -8 5 957 731 226 102 5 chr6 48812828 48813015 -100704022 - B3 SINE B2 -7 209 5 5 957 357 43 0 0 chr6 48813343 48813390 -100703647 + (A)n Simple_repeat Simple_repeat 1 47 0 5 957 582 225 14 7 chr6 48813652 48813791 -100703246 + B1F2 SINE Alu 4 143 -6 5 957 432 0 0 0 chr6 48813826 48813874 -100703163 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 957 273 333 14 42 chr6 48814386 48814530 -100702507 - L1ME2 LINE L1 -330 6114 5975 5 957 286 258 103 26 chr6 48814573 48814719 -100702318 - L1ME2 LINE L1 -264 5898 5744 5 957 1388 229 115 30 chr6 48815354 48815727 -100701310 - MTD LTR MaLR -14 405 1 5 957 552 241 89 80 chr6 48815727 48815888 -100701149 - MTD-int LTR MaLR 0 1258 1086 5 957 1387 89 0 6 chr6 48815888 48816069 -100700968 + B2_Mm2 SINE B2 5 184 -11 5 957 552 241 89 80 chr6 48816069 48816132 -100700905 - MTD-int LTR MaLR -173 1085 1032 5 957 2628 174 110 95 chr6 48816149 48817143 -100699894 + RLTR13D1 LTR ERVK 1 1023 0 5 957 2434 248 29 56 chr6 48817143 48817827 -100699210 - MTD-int LTR MaLR -219 1039 374 5 957 389 246 218 0 chr6 48817921 48818056 -100698981 + Ricksha DNA MuDR 740 905 -2341 5 957 6974 291 84 28 chr6 48818056 48820853 -100696184 + ERVL-B4-int LTR ERVL 1 2954 -2760 5 957 1606 239 49 94 chr6 48821261 48821793 -100695244 + RLTR18B LTR ERVK 1 508 -4 5 957 484 244 111 55 chr6 48822650 48822867 -100694170 + MLT2B5 LTR ERVL 28 352 -365 5 957 965 284 27 46 chr6 48823421 48823683 -100693354 - B4A SINE B4 -6 286 30 5 957 909 33 0 0 chr6 48825000 48825120 -100691917 - L1Md_A LINE L1 0 6582 6463 5 957 895 121 121 0 chr6 48825244 48825376 -100691661 + B1_Mus1 SINE Alu 1 148 0 5 957 22 0 0 0 chr6 48826234 48826256 -100690781 + AT_rich Low_complexity Low_complexity 1 22 0 5 957 1145 191 21 0 chr6 48826256 48826450 -100690587 - B3 SINE B2 -17 199 2 5 957 214 273 0 52 chr6 48827122 48827180 -100689857 + B1F SINE Alu 41 95 -54 5 957 345 272 170 52 chr6 48827601 48827795 -100689242 + MLT1C LTR MaLR 50 266 -201 5 957 513 47 0 0 chr6 48828295 48828359 -100688678 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 957 933 278 49 38 chr6 48828360 48828625 -100688412 - B4 SINE B4 -23 269 2 5 957 314 282 24 0 chr6 48828669 48828754 -100688283 + L1MB8 LINE L1 5848 5934 -244 5 957 624 186 89 0 chr6 48828930 48829054 -100687983 + B1_Mur4 SINE Alu 1 135 -15 5 957 297 0 0 0 chr6 48829056 48829089 -100687948 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 5 957 25 0 0 0 chr6 48829183 48829208 -100687829 + AT_rich Low_complexity Low_complexity 1 25 0 5 957 7933 78 21 28 chr6 48829208 48830318 -100686719 - Lx3_Mus LINE L1 0 7009 5908 5 957 240 163 0 0 chr6 48830319 48830362 -100686675 + T-rich Low_complexity Low_complexity 1 43 0 5 957 26243 74 13 2 chr6 48830371 48835125 -100681912 - Lx3_Mus LINE L1 -907 6102 1261 5 957 279 0 0 0 chr6 48835125 48835156 -100681881 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 957 22577 159 162 29 chr6 48835156 48835916 -100681121 - Lx3_Mus LINE L1 -4626 1260 211 5 957 507 213 9 53 chr6 48835936 48836050 -100680987 + RMER15 LTR ERVL 376 484 -91 5 957 486 70 0 0 chr6 48836119 48836190 -100680847 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 957 1472 312 36 16 chr6 48836198 48836693 -100680344 + RMER15-int LTR ERVL 47 551 -4448 5 957 2850 296 76 10 chr6 48836725 48837927 -100679110 + RMER15-int LTR ERVL 608 1888 -3111 5 957 492 330 125 19 chr6 48837942 48838158 -100678879 + RMER15-int LTR ERVL 1986 2224 -2775 5 957 2907 148 0 17 chr6 48839447 48839908 -100677129 + RLTR19A LTR ERVK 1 453 -43 5 957 1657 277 176 36 chr6 48839913 48840547 -100676490 + RMER15-int LTR ERVL 4185 4900 -99 5 957 192 40 0 0 chr6 48840547 48840572 -100676465 + (CACCC)n Simple_repeat Simple_repeat 1 25 0 5 957 1657 278 71 44 chr6 48840572 48840640 -100676397 + RMER15-int LTR ERVL 4901 4976 -23 5 957 263 223 110 103 chr6 48840644 48840799 -100676238 + RMER15 LTR ERVL 2 157 -418 5 957 273 286 14 0 chr6 48840881 48840951 -100676086 + RMER15 LTR ERVL 422 492 -83 5 957 241 295 159 27 chr6 48841336 48841594 -100675443 - L1M5 LINE L1 -647 5547 5256 5 957 449 263 60 101 chr6 48841638 48841985 -100675052 - L1MB8 LINE L1 -37 6141 5809 5 957 520 276 123 9 chr6 48842292 48842504 -100674533 - L1MB8 LINE L1 -466 5712 5477 5 957 354 242 111 22 chr6 48842536 48842671 -100674366 - L1MA5 LINE L1 0 6300 6154 5 957 337 262 158 92 chr6 48842691 48842777 -100674260 + L1MA5 LINE L1 5861 5967 -333 5 957 853 163 7 0 chr6 48842777 48842912 -100674125 + B1_Mur1 SINE Alu 1 136 -13 5 957 337 262 158 92 chr6 48842912 48843098 -100673939 + L1MA5 LINE L1 5968 6151 -149 5 957 249 258 64 118 chr6 48843204 48843314 -100673723 - B3A SINE B2 0 198 95 5 957 461 247 48 0 chr6 48843452 48843598 -100673439 - L1MB8 LINE L1 -1031 5115 4963 5 957 1561 62 0 0 chr6 48843696 48843889 -100673148 - B2_Mm1t SINE B2 0 193 1 5 957 746 292 124 52 chr6 48844429 48844776 -100672261 + Lx9 LINE L1 6988 7359 -285 5 957 306 0 0 0 chr6 48844890 48844924 -100672113 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 957 510 66 24 73 chr6 48845894 48845976 -100671061 - ETnERV2-int LTR ERVK 0 7406 7329 5 957 540 230 290 43 chr6 48845978 48846278 -100670759 - RLTR13D6 LTR ERVK -367 535 162 5 957 21518 171 39 25 chr6 48846279 48850634 -100666403 - ETnERV2-int LTR ERVK -196 7210 2024 5 957 1249 48 0 0 chr6 48850634 48850780 -100666257 + B1_Mus2 SINE Alu 1 146 -1 5 957 486 46 0 0 chr6 48850785 48850850 -100666187 + (GAAA)n Simple_repeat Simple_repeat 1 65 0 5 957 11074 171 31 14 chr6 48850850 48852951 -100664086 - ETnERV2-int LTR ERVK -4144 2023 2 5 957 778 208 40 179 chr6 48852952 48853326 -100663711 - RLTRETN_Mm LTR ERVK 0 322 1 5 957 279 295 61 61 chr6 48853386 48853534 -100663503 + L1MC1 LINE L1 6178 6325 -8 5 957 316 343 60 46 chr6 48854180 48854397 -100662640 - MIR SINE MIR -36 226 7 5 957 222 191 84 42 chr6 48854435 48854506 -100662531 + B3A SINE B2 7 80 -118 5 957 346 329 78 50 chr6 48854501 48854680 -100662357 + B4A SINE B4 105 288 -4 5 957 258 250 0 0 chr6 48854688 48854748 -100662289 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 957 219 36 0 0 chr6 48858889 48858917 -100658120 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 957 264 30 0 0 chr6 48859232 48859265 -100657772 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 957 426 20 0 0 chr6 48859480 48859531 -100657506 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 957 392 95 27 0 chr6 48859533 48859607 -100657430 + (CAGA)n Simple_repeat Simple_repeat 2 77 0 5 957 286 244 122 0 chr6 48859643 48859733 -100657304 + L1MC1 LINE L1 6215 6315 -18 5 957 279 328 78 11 chr6 48859765 48859944 -100657093 + Lx8 LINE L1 7187 7377 -96 5 957 1372 94 10 15 chr6 48860033 48860228 -100656809 - B2_Mm2 SINE B2 -1 194 1 5 957 702 309 167 49 chr6 48860243 48860360 -100656677 - Lx9 LINE L1 -6 7638 7517 5 957 282 29 0 0 chr6 48860360 48860395 -100656642 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 5 957 702 309 167 49 chr6 48860395 48860869 -100656168 - Lx9 LINE L1 -128 7516 6978 5 957 413 279 44 118 chr6 48860869 48861097 -100655940 + URR1B DNA MER1_type 15 225 0 5 957 1340 284 71 3 chr6 48861099 48861477 -100655560 - Lx9 LINE L1 -707 6937 6534 5 957 237 283 0 0 chr6 48861497 48861550 -100655487 - Lx9 LINE L1 -1177 6467 6415 5 957 21 36 0 0 chr6 48861619 48861647 -100655390 + AT_rich Low_complexity Low_complexity 1 28 0 5 957 203 133 22 0 chr6 48861947 48861992 -100655045 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 5 957 670 312 53 43 chr6 48862004 48862236 -100654801 - Lx8 LINE L1 -734 6910 6591 5 957 364 336 23 49 chr6 48863170 48863348 -100653689 - MIR SINE MIR -94 182 7 5 957 578 182 312 0 chr6 48866002 48866172 -100650865 - URR1B DNA MER1_type -1 224 2 5 957 265 290 19 29 chr6 48866202 48866305 -100650732 + L1MC1 LINE L1 5694 5795 -2087 5 957 403 353 45 48 chr6 48866566 48866855 -100650182 + B4A SINE B4 1 288 -4 5 957 1204 229 61 14 chr6 48866855 48867152 -100649885 - MTD LTR MaLR 0 419 109 5 957 562 220 13 154 chr6 48867168 48867324 -100649713 + B1_Mur1 SINE Alu 11 144 -5 5 957 189 213 0 0 chr6 48867353 48867400 -100649637 + GA-rich Low_complexity Low_complexity 2 48 0 5 957 466 211 31 21 chr6 48867403 48867500 -100649537 - MTD LTR MaLR -321 98 1 5 957 286 192 0 0 chr6 48868830 48868882 -100648155 + L1MC1 LINE L1 6274 6325 -8 5 957 309 314 93 43 chr6 48869275 48869575 -100647462 + Lx8 LINE L1 7158 7472 -1 5 957 1229 89 0 11 chr6 48870439 48870621 -100646416 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 957 258 32 0 0 chr6 48870625 48870656 -100646381 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 5 957 1317 78 0 0 chr6 48870657 48870836 -100646201 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 5 957 202 355 131 28 chr6 48871090 48871235 -100645802 - MIR SINE MIR -86 176 17 5 957 3018 23 0 17 chr6 48872652 48873004 -100644033 + ORR1A0 LTR MaLR 1 346 0 5 957 14235 51 11 2 chr6 48873004 48874780 -100642257 + ORR1A0-int LTR MaLR 1 1792 0 5 957 2989 20 3 23 chr6 48874780 48875133 -100641904 + ORR1A0 LTR MaLR 1 346 0 5 957 833 257 69 61 chr6 48876455 48876716 -100640321 + B4A SINE B4 18 280 -12 5 957 956 291 21 35 chr6 48876880 48877165 -100639872 - Lx8 LINE L1 -538 6935 6655 5 957 521 306 220 34 chr6 48877166 48877602 -100639435 + Lx8 LINE L1 6955 7471 -2 5 957 468 0 0 0 chr6 48877635 48877687 -100639350 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 957 222 118 0 0 chr6 48878014 48878048 -100638989 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 957 281 308 13 113 chr6 48879537 48879687 -100637350 - MIR SINE MIR -105 157 23 6 957 478 288 34 45 chr6 48884372 48884550 -100632487 + B4A SINE B4 51 226 -66 6 957 2865 265 49 93 chr6 48885257 48886325 -100630712 + RMER1A Other Other 1 740 -290 6 957 4654 107 62 37 chr6 48886325 48887118 -100629919 + RLTR22_Mur LTR ERVK 1 813 -1035 6 957 1457 153 44 16 chr6 48887267 48887519 -100629518 + RLTR22_Mur LTR ERVK 1590 1848 0 6 957 1072 171 171 0 chr6 48887519 48887747 -100629290 + RMER1B Other Other 797 1063 -3 6 957 530 311 56 37 chr6 48887768 48887982 -100629055 + B4 SINE B4 1 218 -74 6 957 427 300 90 42 chr6 48887995 48888162 -100628875 + ID_B1 SINE B4 80 257 -35 6 957 2603 57 6 9 chr6 48888813 48889150 -100627887 - L1Md_F2 LINE L1 0 6582 6247 6 958 1271 74 0 0 chr6 48890194 48890357 -100626680 - B2_Mm2 SINE B2 -31 164 2 6 958 1683 138 124 0 chr6 48891025 48891316 -100625721 - IAPEY3_LTR LTR ERVK -5 327 1 6 958 1383 214 53 9 chr6 48891319 48891659 -100625378 - IAPEz-int LTR ERVK -2 6479 6125 6 958 1795 171 52 3 chr6 48891676 48892004 -100625033 - IAPEY3-int LTR ERVK -342 7338 6995 6 958 1376 118 118 0 chr6 48892011 48892231 -100624806 - IAPEz-int LTR ERVK -1290 5252 5007 6 958 357 175 0 0 chr6 48892231 48892288 -100624749 - IAPEz-int LTR ERVK -6039 503 447 6 958 287 260 49 20 chr6 48892305 48892407 -100624630 - IAP-d-int LTR ERVK -6015 1566 1462 6 958 302 308 17 8 chr6 48892434 48892552 -100624485 - IAP-d-int LTR ERVK -5602 940 822 6 958 321 154 58 0 chr6 48892683 48892735 -100624302 - RMER16-int LTR ERVK -983 1004 950 6 958 1657 196 122 14 chr6 48892730 48893220 -100623817 - RMER16-int LTR ERVK -5475 662 192 6 958 2222 146 6 0 chr6 48893212 48893574 -100623463 - IAPEY3-int LTR ERVK -6779 901 538 6 958 605 115 24 1 chr6 48893572 48893661 -100623376 - IAPEY3-int LTR ERVK -1305 165 61 6 958 195 42 0 0 chr6 48893661 48893685 -100623352 + (G)n Simple_repeat Simple_repeat 1 24 0 6 958 544 136 74 46 chr6 48893685 48893704 -100623333 - IAPLTR4_I LTR ERVK -1389 81 57 6 958 1647 124 128 0 chr6 48893722 48894012 -100623025 - IAPEY3_LTR LTR ERVK -5 327 1 6 958 809 280 46 42 chr6 48895387 48895648 -100621389 + B4A SINE B4 29 290 -2 6 958 326 260 0 8 chr6 48895658 48895786 -100621251 + (CA)n Simple_repeat Simple_repeat 1 127 0 6 958 234 0 0 0 chr6 48895786 48895812 -100621225 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 958 582 54 0 0 chr6 48896564 48896638 -100620399 + (TCTCC)n Simple_repeat Simple_repeat 4 77 0 6 958 4362 258 70 97 chr6 48897247 48898459 -100618578 + L1_Mur3 LINE L1 900 2189 -3691 6 958 441 0 0 0 chr6 48898459 48898508 -100618529 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 958 4362 240 55 115 chr6 48898508 48899517 -100617520 + L1_Mur3 LINE L1 2190 3027 -2853 6 958 763 326 52 0 chr6 48901267 48901534 -100615503 + Lx8 LINE L1 6944 7224 -249 6 958 1672 289 87 25 chr6 48901593 48902182 -100614855 + Lx9 LINE L1 6791 7415 -229 6 958 1047 109 0 17 chr6 48902182 48902359 -100614678 + (TA)n Simple_repeat Simple_repeat 2 175 0 6 958 878 184 7 0 chr6 48903664 48903811 -100613226 + B1_Mur3 SINE Alu 1 148 -1 6 958 417 39 0 0 chr6 48903812 48903863 -100613174 + (CATA)n Simple_repeat Simple_repeat 4 54 0 6 958 252 374 45 56 chr6 48903895 48904093 -100612944 - MIR SINE MIR -40 222 27 6 958 275 383 5 64 chr6 48905629 48905816 -100611221 - MIR SINE MIR -70 192 17 6 958 184 356 14 0 chr6 48906729 48906802 -100610235 - L2 LINE L2 -2895 524 451 6 958 297 0 0 0 chr6 48908449 48908482 -100608555 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 958 711 65 0 0 chr6 48908700 48908793 -100608244 + (GAAA)n Simple_repeat Simple_repeat 4 96 0 6 958 1193 96 6 0 chr6 48908793 48908971 -100608066 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 6 958 1335 72 0 0 chr6 48908975 48909155 -100607882 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 958 633 49 0 0 chr6 48909160 48909241 -100607796 + (GGAA)n Simple_repeat Simple_repeat 2 82 0 6 958 1088 92 84 12 chr6 48909241 48909407 -100607630 + B2_Mm1t SINE B2 2 179 -14 6 958 352 99 319 26 chr6 48909473 48909586 -100607451 + B2_Mm2 SINE B2 47 192 -3 6 958 321 89 0 0 chr6 48909587 48909632 -100607405 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 6 958 737 295 40 29 chr6 48909746 48910022 -100607015 + B4A SINE B4 2 280 -12 6 958 303 146 0 0 chr6 48910065 48910120 -100606917 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 958 583 281 172 21 chr6 48910501 48910785 -100606252 - Lx7 LINE L1 -542 6931 6595 6 958 279 255 29 67 chr6 48911547 48911652 -100605385 - MIR SINE MIR -150 112 12 6 958 251 239 0 9 chr6 48911873 48911983 -100605054 + GA-rich Low_complexity Low_complexity 1 109 0 6 958 806 130 0 7 chr6 48912015 48912170 -100604867 + (GA)n Simple_repeat Simple_repeat 2 155 0 6 958 189 0 0 0 chr6 48912444 48912465 -100604572 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 6 958 1670 246 19 22 chr6 48915282 48915643 -100601394 - ORR1D2 LTR MaLR -10 360 1 6 958 1464 248 30 76 chr6 48915869 48916341 -100600696 + RMER6B LTR ERVK 1 450 -11 6 958 5463 117 57 1 chr6 48916342 48917167 -100599870 + Lx LINE L1 5782 6652 -2 6 958 2272 138 35 77 chr6 48917191 48917645 -100599392 + MYSERV6-int LTR ERVK 2 436 -8523 6 958 3538 160 19 5 chr6 48917637 48917682 -100599355 + MYSERV6-int LTR ERVK 361 404 -8555 6 958 423 0 0 0 chr6 48917682 48917729 -100599308 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 958 3538 160 19 5 chr6 48917729 48918272 -100598765 + MYSERV6-int LTR ERVK 405 955 -8004 6 958 677 81 0 20 chr6 48918264 48918365 -100598672 - MYSERV6-int LTR ERVK -7238 1721 1623 6 958 7645 123 3 14 chr6 48918365 48919538 -100597499 + MYSERV6-int LTR ERVK 977 2137 -6822 6 958 638 134 10 0 chr6 48919542 48919639 -100597398 + MYSERV6-int LTR ERVK 4710 4807 -4152 6 958 1197 147 18 18 chr6 48919951 48920173 -100596864 + MYSERV6-int LTR ERVK 4778 4999 -3960 6 958 261 262 14 58 chr6 48920173 48920242 -100596795 + B1_Mus2 SINE Alu 5 70 -77 6 958 245 246 77 0 chr6 48920255 48920320 -100596717 + B1_Mus1 SINE Alu 1 70 -78 6 958 551 200 64 0 chr6 48920326 48920466 -100596571 + MYSERV6-int LTR ERVK 6359 6507 -2452 6 958 3089 123 39 21 chr6 48920490 48921005 -100596032 + MYSERV6-int LTR ERVK 6464 6987 -1972 6 958 459 35 0 0 chr6 48922112 48922169 -100594868 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 958 686 266 83 64 chr6 48922448 48922713 -100594324 + B4A SINE B4 20 289 -3 6 958 432 0 0 0 chr6 48922713 48922761 -100594276 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 958 276 158 0 0 chr6 48922762 48922819 -100594218 + GA-rich Low_complexity Low_complexity 2 58 0 6 958 1009 143 0 0 chr6 48923247 48923394 -100593643 + B1_Mus2 SINE Alu 1 147 0 6 958 1220 326 52 11 chr6 48923908 48924447 -100592590 - Lx9 LINE L1 -761 6883 6323 6 958 432 181 0 0 chr6 48924448 48924575 -100592462 + (TCTCTG)n Simple_repeat Simple_repeat 6 132 0 6 958 2382 267 45 20 chr6 48929356 48930005 -100587032 - Lx9 LINE L1 -551 7093 6429 6 958 1560 213 104 47 chr6 48930013 48930397 -100586640 - MTD LTR MaLR -2 417 12 6 958 468 0 0 0 chr6 48932362 48932414 -100584623 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 958 524 294 75 40 chr6 48932955 48933302 -100583735 + L1MC1 LINE L1 5967 6325 -8 6 958 573 285 14 14 chr6 48933635 48933781 -100583256 + B1_Mur2 SINE Alu 1 146 -3 6 958 1235 54 0 0 chr6 48934057 48934205 -100582832 + B1_Mus1 SINE Alu 1 148 0 6 958 38 61 0 0 chr6 48934232 48934298 -100582739 + AT_rich Low_complexity Low_complexity 1 66 0 6 958 1628 272 162 7 chr6 48934351 48934944 -100582093 - Lx8 LINE L1 -122 7351 6667 6 958 304 359 26 43 chr6 48936453 48936683 -100580354 - MIR SINE MIR -35 227 2 6 958 1654 127 129 11 chr6 48939200 48939478 -100577559 + Lx4A LINE L1 6745 7055 -3 6 958 225 94 0 0 chr6 48939482 48939514 -100577523 + (TAA)n Simple_repeat Simple_repeat 2 33 0 6 958 820 114 7 7 chr6 48941829 48941979 -100575058 + (TG)n Simple_repeat Simple_repeat 2 151 0 6 958 326 276 13 0 chr6 48942004 48942080 -100574957 + MLT1D LTR MaLR 293 369 -136 6 958 748 307 46 46 chr6 48942103 48942386 -100574651 + B4A SINE B4 7 289 -3 6 958 273 183 0 0 chr6 48943442 48943502 -100573535 + GA-rich Low_complexity Low_complexity 4 63 0 6 958 22 0 0 0 chr6 48943615 48943637 -100573400 + AT_rich Low_complexity Low_complexity 1 22 0 6 958 607 337 29 20 chr6 48943665 48943908 -100573129 + B4 SINE B4 1 235 -57 6 958 234 300 110 0 chr6 48943903 48944003 -100573034 + PB1D10 SINE Alu 7 117 0 6 958 288 0 0 0 chr6 48944104 48944136 -100572901 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 958 231 279 67 67 chr6 48944628 48944747 -100572290 - MIR SINE MIR -127 135 17 6 958 1882 154 14 121 chr6 48949880 48950301 -100566736 + ORR1C1 LTR MaLR 1 376 -2 6 958 495 205 55 8 chr6 48950302 48950430 -100566607 + L1MB8 LINE L1 6040 6173 -5 6 958 1654 21 16 0 chr6 48950453 48950643 -100566394 + B2_Mm1a SINE B2 1 193 0 6 958 2414 131 188 13 chr6 48950678 48951136 -100565901 - RMER19B LTR ERVK -12 890 353 6 958 1216 135 4 201 chr6 48951149 48951427 -100565610 - RMER19B LTR ERVK -679 223 1 6 958 2456 155 134 52 chr6 48951780 48952319 -100564718 + RLTR31A_Mm LTR ERVK 1 583 -1 6 958 678 242 111 40 chr6 48953522 48953720 -100563317 + B3 SINE B2 5 216 0 6 958 230 341 65 35 chr6 48954009 48954240 -100562797 + L1M5 LINE L1 5551 5788 -406 6 958 2784 68 79 0 chr6 48954325 48954692 -100562345 - MTA_Mm LTR MaLR 0 396 1 6 958 374 286 12 12 chr6 48955045 48955130 -100561907 + B4A SINE B4 4 88 -204 6 958 216 354 0 48 chr6 48955130 48955149 -100561888 + B2_Mm2 SINE B2 4 102 -93 6 958 384 24 0 0 chr6 48955149 48955191 -100561846 + L1Md_F2 LINE L1 5545 5586 -297 6 958 8687 28 1 0 chr6 48955191 48956184 -100560853 + L1Md_F2 LINE L1 5587 6580 -2 6 958 334 217 228 140 chr6 48956185 48956378 -100560659 + B4A SINE B4 83 292 0 6 958 477 303 128 4 chr6 48956418 48956653 -100560384 + L1MD LINE L1 5475 5738 -621 6 958 258 230 64 41 chr6 48956973 48957145 -100559892 - RMER17D2 LTR ERVK -383 426 251 6 958 499 281 28 14 chr6 48957188 48957329 -100559708 + MTEa LTR MaLR 1 143 -236 6 958 383 345 144 15 chr6 48957329 48957521 -100559516 + MT2A LTR ERVL 1 376 -157 6 958 459 264 26 53 chr6 48957528 48957680 -100559357 + B1F1 SINE Alu 1 148 -1 6 958 459 0 0 0 chr6 48957826 48957877 -100559160 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 958 329 290 77 19 chr6 48958322 48958503 -100558534 - L1ME1 LINE L1 -326 5914 5723 6 958 275 222 19 0 chr6 48958549 48958603 -100558434 - B4 SINE B4 -2 290 236 6 958 451 279 75 48 chr6 48959118 48959265 -100557772 - B4 SINE B4 -140 152 2 6 958 499 266 88 6 chr6 48959527 48959697 -100557340 - MER53 DNA hAT -9 184 1 6 958 849 157 50 73 chr6 48959790 48959969 -100557068 - B3A SINE B2 0 198 24 7 958 211 150 0 24 chr6 48960123 48960164 -100556873 + A-rich Low_complexity Low_complexity 3 42 0 7 958 432 37 0 0 chr6 48961147 48961201 -100555836 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 958 345 311 10 0 chr6 48961685 48961788 -100555249 - PB1D10 SINE Alu -11 106 3 7 958 313 287 27 46 chr6 48961804 48962023 -100555014 - RMER17D2 LTR ERVK -352 457 243 7 958 771 124 14 7 chr6 48962507 48962653 -100554384 + (TCC)n Simple_repeat Simple_repeat 2 148 0 7 958 880 123 14 35 chr6 48963434 48963577 -100553460 + B1_Mur2 SINE Alu 1 140 -9 7 958 279 272 95 36 chr6 48963817 48963901 -100553136 - B3A SINE B2 -83 115 27 7 958 234 0 0 0 chr6 48963901 48963927 -100553110 + (T)n Simple_repeat Simple_repeat 1 26 0 7 958 222 250 0 0 chr6 48964031 48964075 -100552962 + MIR SINE MIR 105 148 -114 7 958 11486 55 3 0 chr6 48964264 48966383 -100550654 - L1Md_F2 LINE L1 0 6582 4459 7 958 5211 56 0 0 chr6 48966383 48967039 -100549998 + L1Md_F2 LINE L1 3794 4449 -1434 7 958 321 175 104 85 chr6 48967090 48967196 -100549841 - PB1D10 SINE Alu -9 108 1 7 958 256 224 45 0 chr6 48968192 48968259 -100548778 - L1MB7 LINE L1 -217 5967 5898 7 958 314 281 108 0 chr6 48968641 48968780 -100548257 + L1ME1 LINE L1 5949 6102 -77 7 958 507 278 112 70 chr6 48969421 48969680 -100547357 + MLT1C LTR MaLR 148 417 -50 7 958 238 374 44 6 chr6 48969681 48969840 -100547197 - L2 LINE L2 -1352 2067 1903 7 958 276 100 0 0 chr6 48970181 48970221 -100546816 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 958 516 167 0 0 chr6 48970563 48970683 -100546354 + (TG)n Simple_repeat Simple_repeat 2 121 0 7 958 396 221 0 0 chr6 48970685 48970762 -100546275 - HAL1-3A_ME LINE L1 -808 2050 1974 7 958 214 176 19 56 chr6 48972031 48972085 -100544952 + ID4 SINE ID 5 56 -27 7 958 216 0 0 0 chr6 48972107 48972131 -100544906 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 958 2625 101 23 3 chr6 48972238 48972627 -100544410 - BGLII LTR ERVK -1 420 24 7 958 4061 153 111 78 chr6 48973050 48973923 -100543114 - RMER19B LTR ERVK 0 902 1 7 958 1745 254 180 10 chr6 48974384 48974966 -100542071 - Lx8 LINE L1 -362 7111 6431 7 958 633 334 58 39 chr6 48975436 48975766 -100541271 + MER58B DNA MER1_type 6 341 0 7 958 336 167 15 15 chr6 48975985 48976052 -100540985 - ID4 SINE ID -15 68 2 7 958 237 154 0 0 chr6 48976054 48976093 -100540944 - MLT1L LTR MaLR -217 393 355 7 958 397 225 22 40 chr6 48976917 48977056 -100539981 - B1_Mur1 SINE Alu -2 147 16 7 958 277 284 161 0 chr6 48977017 48977098 -100539939 + PB1D10 SINE Alu 18 111 -6 7 958 279 0 0 0 chr6 48977115 48977146 -100539891 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 7 958 308 191 32 11 chr6 48977153 48977248 -100539789 + GA-rich Low_complexity Low_complexity 4 100 0 7 958 1149 79 11 17 chr6 48977248 48977428 -100539609 + (GAAAA)n Simple_repeat Simple_repeat 2 180 0 7 958 374 243 167 9 chr6 48977469 48977577 -100539460 + B1F1 SINE Alu 24 148 -1 7 958 204 40 0 0 chr6 48977579 48977604 -100539433 + (CAA)n Simple_repeat Simple_repeat 3 27 0 7 958 1213 48 14 0 chr6 48977606 48977751 -100539286 + B1_Mus1 SINE Alu 1 147 -1 7 958 27 0 0 0 chr6 48977755 48977782 -100539255 + AT_rich Low_complexity Low_complexity 1 27 0 7 958 22 56 0 0 chr6 48977888 48977924 -100539113 + AT_rich Low_complexity Low_complexity 1 36 0 7 958 180 0 0 0 chr6 48979276 48979296 -100537741 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 7 958 362 281 32 2 chr6 48979362 48979474 -100537563 - MIR SINE MIR -120 148 34 7 958 549 192 0 0 chr6 48980538 48980658 -100536379 + (CA)n Simple_repeat Simple_repeat 2 121 0 7 958 542 286 167 54 chr6 48980708 48981265 -100535772 + L1MC4 LINE L1 7421 8040 -2 7 958 602 229 75 23 chr6 48981670 48981844 -100535193 - L1MB5 LINE L1 -175 5999 5817 7 958 692 284 5 19 chr6 48981859 48982074 -100534963 + ID_B1 SINE B4 1 212 -12 7 958 297 300 10 29 chr6 48982381 48982484 -100534553 + PB1D10 SINE Alu 3 103 -14 7 958 273 217 0 0 chr6 48982542 48982588 -100534449 + RSINE1 SINE B4 13 58 -107 7 958 341 222 10 0 chr6 48982654 48982753 -100534284 + (CA)n Simple_repeat Simple_repeat 2 101 0 7 958 749 312 119 53 chr6 48983259 48983713 -100533324 + MLT1D LTR MaLR 1 484 -21 7 958 626 161 340 6 chr6 48983753 48983909 -100533128 + B3 SINE B2 2 209 -7 7 958 710 270 52 0 chr6 48984021 48984195 -100532842 + ID_B1 SINE B4 4 186 -38 7 958 730 257 33 0 chr6 48984603 48984755 -100532282 - B3 SINE B2 -18 198 42 7 958 374 222 0 36 chr6 48984761 48984901 -100532136 + GA-rich Low_complexity Low_complexity 1 135 0 7 958 312 127 0 0 chr6 48984901 48984956 -100532081 + (ATG)n Simple_repeat Simple_repeat 1 55 0 7 958 707 292 0 7 chr6 48985246 48985391 -100531646 - RSINE1 SINE B4 -17 148 5 7 958 725 206 0 27 chr6 48985420 48985570 -100531467 - B1_Mur2 SINE Alu 0 149 4 7 958 371 133 33 0 chr6 48985570 48985626 -100531411 - B2_Mm1t SINE B2 -23 170 113 7 958 207 282 11 66 chr6 48987790 48987881 -100529156 - MIR SINE MIR -112 150 65 7 958 871 215 0 0 chr6 48988238 48988387 -100528650 + B1_Mur2 SINE Alu 1 149 0 7 958 231 319 0 21 chr6 48988706 48988799 -100528238 - L1MD1 LINE L1 -1 6241 6151 7 958 660 248 109 19 chr6 48988799 48989066 -100527971 - L1MD1 LINE L1 -206 6036 5746 7 958 355 269 20 40 chr6 48989423 48989574 -100527463 - L1MD1 LINE L1 -970 5176 5029 7 958 461 217 207 52 chr6 48989595 48989788 -100527249 - B3A SINE B2 0 193 1 7 958 339 228 25 0 chr6 48989984 48990063 -100526974 - ID4 SINE ID 0 83 3 7 958 189 273 73 0 chr6 48990173 48990228 -100526809 + MIR SINE MIR 87 145 -63 7 958 187 314 171 0 chr6 48990380 48990450 -100526587 - MIR SINE MIR -111 97 16 7 958 255 309 46 24 chr6 48990631 48990846 -100526191 + L1MEg LINE L1 2065 2290 -3856 7 958 619 226 46 58 chr6 48990852 48991026 -100526011 + B3 SINE B2 45 216 0 7 958 495 320 85 63 chr6 48991042 48991155 -100525882 + L1MEg LINE L1 2272 2393 -3753 7 958 1306 115 16 10 chr6 48991155 48991349 -100525688 + B2_Mm2 SINE B2 1 195 0 7 958 495 320 85 63 chr6 48991349 48991505 -100525532 + L1MEg LINE L1 2394 2547 -3599 7 958 1213 55 7 0 chr6 48991517 48991663 -100525374 - B1_Mus2 SINE Alu 0 147 1 7 958 365 189 120 22 chr6 48991742 48991834 -100525203 - PB1D7 SINE Alu -3 117 17 7 958 298 308 114 24 chr6 48992278 48992401 -100524636 - RSINE1 SINE B4 -30 135 2 7 958 1192 48 0 13 chr6 48992458 48992607 -100524430 - B1_Mus1 SINE Alu 0 148 2 7 958 216 0 0 0 chr6 48993350 48993374 -100523663 + (T)n Simple_repeat Simple_repeat 1 24 0 7 958 871 189 72 34 chr6 48993374 48993582 -100523455 - B3 SINE B2 0 216 1 7 958 1094 37 82 0 chr6 48993636 48993771 -100523266 + B1_Mm SINE Alu 2 147 0 7 958 210 118 0 0 chr6 48993773 48993807 -100523230 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 7 958 417 159 45 26 chr6 48996268 48996423 -100520614 + (CA)n Simple_repeat Simple_repeat 2 159 0 7 958 280 319 0 0 chr6 48998003 48998072 -100518965 + C-rich Low_complexity Low_complexity 4 72 0 7 958 273 308 13 0 chr6 48998213 48998291 -100518746 - B1_Mur1 SINE Alu -25 124 46 7 958 543 250 183 6 chr6 48998854 48999023 -100518014 - ID_B1 SINE B4 -16 208 10 7 958 596 253 35 18 chr6 48999549 48999718 -100517319 - B4A SINE B4 -13 279 108 7 958 31 26 0 0 chr6 48999813 48999851 -100517186 + AT_rich Low_complexity Low_complexity 1 38 0 7 958 288 286 158 18 chr6 48999866 48999980 -100517057 - RSINE1 SINE B4 -33 132 3 7 958 253 163 20 0 chr6 49000231 49000280 -100516757 + ID_B1 SINE B4 175 224 0 1 958 433 298 21 28 chr6 49000768 49000913 -100516124 - MLT1A0 LTR MaLR -116 249 106 2 958 213 65 0 0 chr6 49001332 49001363 -100515674 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 958 841 249 25 0 chr6 49001375 49001572 -100515465 + ID_B1 SINE B4 23 224 0 4 958 296 307 0 43 chr6 49001622 49001714 -100515323 + ID_B1 SINE B4 70 157 -67 5 958 393 242 126 0 chr6 49001644 49001739 -100515298 + PB1D7 SINE Alu 7 113 -7 6 958 222 303 66 0 chr6 49002631 49002707 -100514330 + B1F SINE Alu 6 86 -63 7 958 441 0 0 0 chr6 49002727 49002776 -100514261 + (GA)n Simple_repeat Simple_repeat 1 49 0 8 958 864 243 57 64 chr6 49002783 49003064 -100513973 + B4 SINE B4 14 292 0 9 958 204 284 0 0 chr6 49003072 49003206 -100513831 + (CA)n Simple_repeat Simple_repeat 1 134 0 1 958 232 48 59 73 chr6 49003250 49003318 -100513719 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 1 958 238 218 161 0 chr6 49003549 49003636 -100513401 - MER57D LTR ERV1 0 411 311 1 958 312 70 0 0 chr6 49003780 49003823 -100513214 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 958 629 304 23 0 chr6 49003834 49004005 -100513032 - B3A SINE B2 -23 175 1 1 958 1278 27 0 0 chr6 49004072 49004220 -100512817 - B1_Mus1 SINE Alu 0 148 1 1 958 1032 172 65 5 chr6 49004237 49004436 -100512601 - B3 SINE B2 -5 211 1 1 958 1140 92 0 0 chr6 49004459 49004687 -100512350 + (TG)n Simple_repeat Simple_repeat 1 228 0 1 958 543 162 78 35 chr6 49007174 49007315 -100509722 + MER20 DNA MER1_type 28 174 -45 1 958 486 0 0 0 chr6 49007577 49007631 -100509406 + (ATTG)n Simple_repeat Simple_repeat 2 55 0 1 958 251 288 43 43 chr6 49007699 49007815 -100509222 - MER5A DNA MER1_type -54 135 20 2 958 202 81 0 88 chr6 49008410 49008478 -100508559 + (TTG)n Simple_repeat Simple_repeat 2 63 0 2 958 1344 176 142 9 chr6 49008899 49009238 -100507799 + ORR1C2 LTR MaLR 1 384 0 2 958 215 202 22 22 chr6 49010079 49010170 -100506867 + CT-rich Low_complexity Low_complexity 1 91 0 2 958 207 262 0 0 chr6 49010499 49010541 -100506496 + polypyrimidine Low_complexity Low_complexity 5 46 0 2 958 267 31 0 0 chr6 49010541 49010573 -100506464 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 958 270 0 0 0 chr6 49010573 49010602 -100506435 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 958 538 188 42 8 chr6 49010603 49010721 -100506316 - B3A SINE B2 -48 150 29 2 958 760 127 80 29 chr6 49010943 49011081 -100505956 + B3 SINE B2 1 145 -71 2 958 225 0 0 0 chr6 49011105 49011130 -100505907 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 958 279 0 0 0 chr6 49011130 49011160 -100505877 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 958 504 304 44 27 chr6 49011405 49011592 -100505445 + B3A SINE B2 1 188 -28 3 958 227 269 218 40 chr6 49011686 49011810 -100505227 + L1MEd LINE L1 596 741 -5378 3 958 217 276 46 114 chr6 49011868 49011999 -100505038 + PB1 SINE Alu 3 124 -3 3 958 675 161 0 0 chr6 49012262 49012399 -100504638 + (TG)n Simple_repeat Simple_repeat 2 138 0 3 958 277 288 108 70 chr6 49012400 49012557 -100504480 - RSINE1 SINE B4 0 165 3 3 958 258 254 39 63 chr6 49012571 49012691 -100504346 - L1MC5 LINE L1 -187 7774 7660 3 958 3885 40 76 0 chr6 49012691 49012883 -100504154 - RLTR1B LTR ERV1 0 512 321 3 958 198 0 0 0 chr6 49012883 49012905 -100504132 + (CTGGGG)n Simple_repeat Simple_repeat 1 22 0 3 958 3885 40 76 0 chr6 49012905 49013188 -100503849 - RLTR1B LTR ERV1 -192 320 2 3 958 258 254 39 63 chr6 49013188 49013273 -100503764 - L1MC5 LINE L1 -302 7659 7574 3 958 228 336 101 40 chr6 49013289 49013438 -100503599 + Tigger5 DNA MER2_type 72 229 -2177 3 958 270 259 0 176 chr6 49013447 49013583 -100503454 + Tigger5 DNA MER2_type 2295 2406 0 3 958 492 291 65 11 chr6 49013720 49013904 -100503133 + MLT1B LTR MaLR 195 388 -2 4 958 437 250 7 62 chr6 49013935 49014080 -100502957 + ID_B1 SINE B4 88 224 0 4 958 254 234 12 38 chr6 49014080 49014160 -100502877 + GA-rich Low_complexity Low_complexity 1 78 0 4 958 185 0 40 0 chr6 49014847 49014872 -100502165 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 4 958 3802 46 18 42 chr6 49014875 49015375 -100501662 + L1_Mus2 LINE L1 6078 6565 -1 4 958 1352 160 11 46 chr6 49015379 49015660 -100501377 + RMER4B LTR ERVK 33 303 -282 4 958 725 61 0 0 chr6 49015660 49015759 -100501278 + L1_Mus1 LINE L1 6468 6566 -1 4 958 1694 0 22 0 chr6 49015770 49015955 -100501082 + B2_Mm1a SINE B2 1 189 -4 4 958 13425 124 14 18 chr6 49015972 49016289 -100500748 + L1_Mur2 LINE L1 3461 3750 -2127 4 958 2651 43 65 0 chr6 49016289 49016614 -100500423 + ORR1A1 LTR MaLR 1 346 0 4 958 13425 124 14 18 chr6 49016614 49018482 -100498555 + L1_Mur2 LINE L1 3751 5637 -240 4 958 540 211 52 9 chr6 49018536 49018651 -100498386 - B2_Mm2 SINE B2 -70 125 6 5 958 899 50 17 0 chr6 49018986 49019106 -100497931 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 5 958 1447 56 0 11 chr6 49019114 49019295 -100497742 - B2_Mm2 SINE B2 -15 180 2 5 958 2242 142 73 60 chr6 49019349 49019951 -100497086 - RMER4A LTR ERVK 0 585 6 5 958 298 0 48 0 chr6 49020277 49020319 -100496718 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 958 774 203 14 7 chr6 49020747 49020891 -100496146 - B1_Mur1 SINE Alu -2 147 3 5 959 180 0 0 0 chr6 49022164 49022184 -100494853 + (A)n Simple_repeat Simple_repeat 1 20 0 5 959 352 206 15 0 chr6 49022386 49022454 -100494583 - Lx8 LINE L1 -119 7354 7286 5 959 1584 237 119 40 chr6 49022467 49022945 -100494092 - Lx8 LINE L1 -766 6707 6192 5 959 230 233 0 0 chr6 49022979 49023039 -100493998 - B3 SINE B2 -4 212 153 5 959 312 287 35 0 chr6 49023224 49023339 -100493698 + GA-rich Low_complexity Low_complexity 1 119 0 5 959 831 99 136 13 chr6 49023365 49023519 -100493518 - B2_Mm2 SINE B2 -22 173 1 6 959 192 152 0 0 chr6 49023542 49023575 -100493462 + CT-rich Low_complexity Low_complexity 3 35 0 6 959 743 172 31 0 chr6 49023587 49023715 -100493322 - B1_Mus1 SINE Alu -12 136 5 6 959 387 253 82 133 chr6 49025562 49025706 -100491331 - B3 SINE B2 0 198 47 6 959 823 114 23 8 chr6 49025745 49025877 -100491160 + B1_Mus2 SINE Alu 5 138 -9 6 959 198 0 0 0 chr6 49025877 49025899 -100491138 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 959 323 205 103 0 chr6 49025945 49026023 -100491014 - B3A SINE B2 -107 91 6 5 959 317 273 82 8 chr6 49026044 49026166 -100490871 - MER3 DNA MER1_type -77 132 2 6 959 399 255 110 39 chr6 49026169 49026324 -100490713 - MTD LTR MaLR 0 419 254 6 959 282 116 0 0 chr6 49026711 49026754 -100490283 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 959 678 196 0 48 chr6 49026754 49026899 -100490138 - B1_Mm SINE Alu -1 146 9 6 959 280 270 70 0 chr6 49027137 49027237 -100489800 - L1MB3 LINE L1 -233 5950 5844 7 959 614 243 88 10 chr6 49027316 49027517 -100489520 - L1MB3 LINE L1 -638 5806 5591 7 959 630 280 111 86 chr6 49027636 49027886 -100489151 - L1MB3 LINE L1 -1110 5033 4791 7 959 935 206 19 32 chr6 49027886 49028102 -100488935 - B3 SINE B2 -3 213 1 7 959 630 280 111 86 chr6 49028102 49028374 -100488663 - L1MB3 LINE L1 -1353 4790 4498 7 959 307 118 39 0 chr6 49028428 49028479 -100488558 - ORR1A2 LTR MaLR -2 324 272 7 959 1073 87 0 0 chr6 49028506 49028644 -100488393 - B1_Mus1 SINE Alu -9 139 2 7 959 1778 90 25 21 chr6 49028644 49028928 -100488109 - ORR1A2 LTR MaLR -42 285 1 7 959 272 299 93 15 chr6 49028928 49029002 -100488035 - L1MB3 LINE L1 -1725 4415 4340 7 959 288 0 0 0 chr6 49029002 49029034 -100488003 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 959 311 258 76 24 chr6 49029034 49029181 -100487856 - L1MB3 LINE L1 -1801 4339 4187 7 959 455 188 106 0 chr6 49029194 49029279 -100487758 - PB1D9 SINE Alu -13 107 14 7 959 239 263 0 146 chr6 49029201 49029290 -100487747 - MT2B LTR ERVL -358 243 168 7 959 617 188 71 21 chr6 49029310 49029451 -100487586 - B1_Mur3 SINE Alu 0 149 2 7 959 825 254 118 55 chr6 49029452 49029852 -100487185 - L1_Mur3 LINE L1 -1714 4166 3742 7 959 21 0 0 0 chr6 49029942 49029963 -100487074 + AT_rich Low_complexity Low_complexity 1 21 0 7 959 183 146 0 0 chr6 49030106 49030147 -100486890 + (A)n Simple_repeat Simple_repeat 1 41 0 8 959 245 135 0 19 chr6 49030467 49030520 -100486517 + CT-rich Low_complexity Low_complexity 2 53 0 8 959 300 111 0 0 chr6 49031342 49031387 -100485650 + (A)n Simple_repeat Simple_repeat 1 45 0 8 959 464 249 42 88 chr6 49031551 49031584 -100485453 - CYRA11_Mm Unknown Y-chromosome -204 413 187 8 959 1186 133 29 10 chr6 49031584 49031789 -100485248 + URR1B DNA MER1_type 1 209 -16 8 959 251 248 167 31 chr6 49032495 49032657 -100484380 - L1_Rod LINE L1 -766 5380 5139 8 959 620 206 318 35 chr6 49033321 49033601 -100483436 - MTC LTR MaLR -9 412 40 8 959 1145 38 0 0 chr6 49034145 49034278 -100482759 + B1_Mm SINE Alu 2 134 -13 8 959 188 34 0 33 chr6 49034281 49034311 -100482726 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 959 25 0 0 0 chr6 49036684 49036709 -100480328 + AT_rich Low_complexity Low_complexity 1 25 0 8 959 243 0 0 0 chr6 49037115 49037142 -100479895 + (T)n Simple_repeat Simple_repeat 1 27 0 9 959 243 236 0 0 chr6 49037591 49037646 -100479391 + PB1 SINE Alu 43 97 -30 9 959 264 313 0 23 chr6 49039119 49039214 -100477823 + PB1D7 SINE Alu 16 108 -12 9 959 289 172 17 0 chr6 49039528 49039586 -100477451 - B3 SINE B2 -5 211 153 9 959 206 276 133 5 chr6 49039944 49040035 -100477002 - MIR SINE MIR -125 143 47 9 959 343 250 149 8 chr6 49040394 49040515 -100476522 - MIR SINE MIR -92 170 33 9 959 813 200 0 7 chr6 49042334 49042485 -100474552 - B1_Mur4 SINE Alu 0 150 1 9 959 345 263 136 54 chr6 49042736 49043086 -100473951 - L1ME1 LINE L1 -189 5989 5605 9 959 335 302 92 6 chr6 49043263 49043426 -100473611 + B4A SINE B4 115 291 -1 9 959 395 178 178 0 chr6 49043801 49043902 -100473135 - PB1D9 SINE Alu 0 120 2 9 959 194 174 0 21 chr6 49044618 49044665 -100472372 + C-rich Low_complexity Low_complexity 1 46 0 1 959 681 22 0 11 chr6 49044921 49045011 -100472026 - B1_Mus2 SINE Alu -1 146 58 1 959 1638 100 140 24 chr6 49045277 49045605 -100471432 + ORR1B2 LTR MaLR 2 367 0 1 959 809 202 151 6 chr6 49045850 49046029 -100471008 + B3 SINE B2 1 205 -11 1 959 479 141 24 0 chr6 49046187 49046272 -100470765 + B1_Mur3 SINE Alu 57 143 -6 1 959 470 294 58 68 chr6 49048349 49048535 -100468502 + B4A SINE B4 47 230 -62 1 959 278 280 38 40 chr6 49048535 49048693 -100468344 + B4A SINE B4 2 161 -4 1 959 203 250 0 0 chr6 49048862 49048906 -100468131 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 959 254 190 86 0 chr6 49049057 49049115 -100467922 - ID4 SINE ID -19 64 2 1 959 988 259 14 0 chr6 49049296 49049516 -100467521 + ID_B1 SINE B4 2 224 0 1 959 713 252 70 25 chr6 49049579 49049778 -100467259 + B3 SINE B2 2 209 -7 1 959 180 0 0 0 chr6 49051487 49051507 -100465530 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1 959 228 67 0 0 chr6 49051508 49051538 -100465499 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 959 670 225 101 0 chr6 49051538 49051676 -100465361 - B3 SINE B2 -64 152 1 1 959 1107 88 7 0 chr6 49051918 49052065 -100464972 - B1_Mus1 SINE Alu 0 148 1 1 959 503 196 29 29 chr6 49052103 49052208 -100464829 - B1_Mur2 SINE Alu -12 137 33 1 959 459 215 19 0 chr6 49052263 49052370 -100464667 - B1F SINE Alu -19 130 22 1 959 408 91 115 13 chr6 49052836 49052914 -100464123 - MTD LTR MaLR -126 293 208 1 959 226 229 59 24 chr6 49053281 49053366 -100463671 + PB1D10 SINE Alu 29 116 -1 1 959 545 266 90 7 chr6 49053377 49053521 -100463516 + B3 SINE B2 2 157 -59 1 959 303 286 77 0 chr6 49053765 49053856 -100463181 - PB1D10 SINE Alu -5 112 15 1 959 21 0 0 0 chr6 49056506 49056527 -100460510 + AT_rich Low_complexity Low_complexity 1 21 0 1 959 303 189 226 35 chr6 49056807 49056922 -100460115 + MLT1F LTR MaLR 66 202 -346 1 959 436 163 43 0 chr6 49057999 49058091 -100458946 - B4A SINE B4 -11 281 186 1 959 396 55 0 0 chr6 49058318 49058373 -100458664 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 959 301 290 75 15 chr6 49059243 49059376 -100457661 - B1F2 SINE Alu -8 141 1 1 959 574 290 143 15 chr6 49059406 49059742 -100457295 + MTE2b LTR MaLR 1 379 0 1 959 318 161 0 0 chr6 49060111 49060126 -100456911 + A-rich Low_complexity Low_complexity 1 15 0 1 959 1240 48 0 0 chr6 49060126 49060273 -100456764 + B1_Mm SINE Alu 1 147 0 1 959 318 161 0 0 chr6 49060273 49060319 -100456718 + A-rich Low_complexity Low_complexity 16 61 0 1 959 646 151 134 0 chr6 49060319 49060438 -100456599 + B1_Mus1 SINE Alu 1 135 -13 1 959 407 19 19 0 chr6 49060442 49060494 -100456543 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 959 456 280 22 15 chr6 49061146 49061280 -100455757 - MER20 DNA MER1_type -84 135 1 1 959 7692 101 23 0 chr6 49061519 49063190 -100453847 - L1_Mus4 LINE L1 -7 6629 4922 1 959 542 65 0 42 chr6 49063188 49063284 -100453753 + L1Md_F2 LINE L1 6491 6582 0 1 959 690 150 75 0 chr6 49063279 49063399 -100453638 - L1_Mus4 LINE L1 -937 4946 4818 1 959 1135 56 0 27 chr6 49063446 49063592 -100453445 + B1_Mus1 SINE Alu 1 142 -6 1 959 747 281 39 0 chr6 49064430 49064661 -100452376 + RCHARR1 DNA MER1_type 3 242 -732 1 959 1993 224 63 33 chr6 49064732 49065338 -100451699 + RCHARR1 DNA MER1_type 350 973 -1 1 959 543 43 0 0 chr6 49066249 49066319 -100450718 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 959 458 333 30 24 chr6 49066351 49066517 -100450520 + B3A SINE B2 5 171 -27 1 959 333 68 0 0 chr6 49066534 49066578 -100450459 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 1 959 319 305 40 48 chr6 49066596 49066720 -100450317 - RSINE1 SINE B4 -41 124 2 1 959 600 14 0 0 chr6 49067943 49068012 -100449025 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 1 959 277 314 34 68 chr6 49068158 49068305 -100448732 - RSINE1 SINE B4 -13 152 11 1 959 201 39 0 0 chr6 49069185 49069211 -100447826 + (G)n Simple_repeat Simple_repeat 1 26 0 1 959 2000 103 77 29 chr6 49070491 49070802 -100446235 + ORR1A3 LTR MaLR 1 326 0 1 959 5181 174 43 39 chr6 49071487 49072974 -100444063 - ORR1B1-int LTR MaLR 0 1963 15 1 959 14119 77 26 14 chr6 49073002 49075693 -100441344 - L1VL2 LINE L1 -603 3012 290 1 959 506 221 87 0 chr6 49075701 49075805 -100441232 - B1_Mus2 SINE Alu -32 115 3 1 959 815 189 88 0 chr6 49075805 49075871 -100441166 - MT2B LTR ERVL -435 166 87 1 959 3139 164 128 21 chr6 49075736 49076414 -100440623 - ORR1B1-int LTR MaLR -1157 806 60 1 959 261 0 0 0 chr6 49076414 49076443 -100440594 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 959 3139 164 128 21 chr6 49076443 49076492 -100440545 - ORR1B1-int LTR MaLR -1904 59 2 1 959 1739 163 60 15 chr6 49076499 49076830 -100440207 - ORR1B1 LTR MaLR -8 386 41 1 959 585 265 144 25 chr6 49077215 49077405 -100439632 + B4A SINE B4 17 230 -62 1 959 495 331 32 0 chr6 49077405 49077559 -100439478 + RSINE1 SINE B4 3 161 -4 1 959 207 266 12 12 chr6 49077563 49077643 -100439394 + (CAAA)n Simple_repeat Simple_repeat 1 80 0 1 959 377 143 0 54 chr6 49077765 49077855 -100439182 - PB1D10 SINE Alu 0 117 41 1 959 317 205 327 9 chr6 49077961 49078074 -100438963 - B1_Mur4 SINE Alu 0 150 2 1 959 194 57 57 0 chr6 49078160 49078195 -100438842 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 1 959 1002 62 161 6 chr6 49078869 49079031 -100438006 - B2_Mm1t SINE B2 -5 188 2 1 959 734 165 45 0 chr6 49079162 49079295 -100437742 - B1_Mus1 SINE Alu 0 148 10 1 959 21 0 0 0 chr6 49079329 49079350 -100437687 + AT_rich Low_complexity Low_complexity 1 21 0 1 959 24 0 0 0 chr6 49079693 49079717 -100437320 + AT_rich Low_complexity Low_complexity 1 24 0 1 959 229 253 33 0 chr6 49080175 49080266 -100436771 + (TA)n Simple_repeat Simple_repeat 1 94 0 1 959 587 238 12 0 chr6 49080699 49080859 -100436178 + GA-rich Low_complexity Low_complexity 3 164 0 1 959 232 271 45 34 chr6 49080940 49081028 -100436009 - B3 SINE B2 -60 156 68 1 959 613 191 39 84 chr6 49081237 49081391 -100435646 + B1_Mur3 SINE Alu 2 148 -1 1 959 198 0 0 0 chr6 49081409 49081431 -100435606 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 959 298 252 39 39 chr6 49081434 49081537 -100435500 - L1_Mur3 LINE L1 -499 5798 5696 1 959 234 0 0 0 chr6 49081667 49081693 -100435344 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 959 256 196 20 0 chr6 49081891 49081942 -100435095 - L1_Rod LINE L1 -642 5205 5154 1 959 369 286 111 26 chr6 49082050 49082289 -100434748 - L1_Mur3 LINE L1 -1419 4724 4407 1 959 2889 173 78 27 chr6 49082371 49082959 -100434078 - Lx5 LINE L1 0 7050 6433 1 959 1753 297 117 30 chr6 49082991 49084075 -100432962 - L1_Mur3 LINE L1 -1471 4409 3232 1 959 255 93 0 0 chr6 49084101 49084144 -100432893 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 959 369 159 0 0 chr6 49085862 49085925 -100431112 - ID_B1 SINE B4 0 224 162 1 959 301 185 0 4 chr6 49086398 49086474 -100430563 + B1_Mus2 SINE Alu 46 149 0 1 959 328 211 117 10 chr6 49086854 49086956 -100430081 + PB1D9 SINE Alu 2 108 -41 1 959 313 228 104 82 chr6 49087373 49087507 -100429530 + MT2B LTR ERVL 120 256 -345 1 959 627 183 60 22 chr6 49087414 49087548 -100429489 + B1_Mur3 SINE Alu 11 149 0 1 959 937 318 87 2 chr6 49087585 49088023 -100429014 + L1MB7 LINE L1 5700 6174 -10 1 959 3196 128 35 42 chr6 49088081 49088660 -100428377 + RMER15 LTR ERVL 1 575 0 1 959 361 304 19 29 chr6 49089567 49089672 -100427365 + PB1D10 SINE Alu 9 112 -5 1 959 364 125 0 0 chr6 49089681 49089737 -100427300 + Lx6 LINE L1 5826 5881 -1579 1 959 387 0 0 0 chr6 49089737 49089780 -100427257 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 959 799 254 105 5 chr6 49089780 49090040 -100426997 + Lx6 LINE L1 7137 7389 -71 1 959 180 0 0 0 chr6 49090041 49090061 -100426976 + (TAA)n Simple_repeat Simple_repeat 3 22 0 1 959 633 13 0 0 chr6 49090317 49090442 -100426595 + L1Md_T LINE L1 6498 6582 0 1 959 227 303 101 0 chr6 49092025 49092114 -100424923 + B1F1 SINE Alu 1 98 -51 1 959 228 219 47 0 chr6 49092247 49092311 -100424726 + ID4 SINE ID 4 70 -13 1 959 837 192 13 13 chr6 49092373 49092531 -100424506 - Lx7 LINE L1 -442 7254 7097 1 959 373 258 199 6 chr6 49092531 49092687 -100424350 - B4 SINE B4 -77 215 30 1 959 339 191 56 14 chr6 49093079 49093178 -100423859 + PB1D7 SINE Alu 2 111 -9 1 959 336 284 0 0 chr6 49093259 49093347 -100423690 + PB1D10 SINE Alu 9 96 -21 1 959 363 279 100 29 chr6 49093846 49094016 -100423021 + L1MB7 LINE L1 5528 5709 -469 1 959 452 294 100 22 chr6 49094244 49094515 -100422522 + L1MB7 LINE L1 5874 6165 -19 1 959 578 231 31 12 chr6 49095695 49095857 -100421180 + B3 SINE B2 48 212 -4 1 959 248 215 0 2 chr6 49096023 49096076 -100420961 - B3A SINE B2 -139 56 5 1 959 1006 280 105 17 chr6 49096118 49096652 -100420385 + L1MC3 LINE L1 7205 7785 0 1 959 644 320 63 7 chr6 49096647 49096949 -100420088 + L1MB7 LINE L1 5814 6132 -52 1 959 228 86 0 0 chr6 49097042 49097077 -100419960 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 959 243 0 0 0 chr6 49097077 49097104 -100419933 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 959 932 28 5 261 chr6 49097171 49097366 -100419671 - B1_Mm SINE Alu 0 147 3 1 959 583 249 46 56 chr6 49097522 49097718 -100419319 - B4 SINE B4 -98 194 1 1 959 239 242 81 0 chr6 49097938 49098000 -100419037 - B1F SINE Alu -10 139 73 1 959 351 0 0 0 chr6 49098630 49098669 -100418368 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 959 570 146 0 0 chr6 49099532 49099628 -100417409 + (GAAAA)n Simple_repeat Simple_repeat 4 99 0 2 959 518 242 31 8 chr6 49099692 49099821 -100417216 + RSINE1 SINE B4 1 132 -33 2 959 745 258 47 0 chr6 49100135 49100348 -100416689 + B4 SINE B4 68 290 -2 2 959 419 291 20 34 chr6 49101223 49101369 -100415668 + RSINE1 SINE B4 22 165 0 2 959 215 309 57 29 chr6 49101416 49101486 -100415551 + PB1D10 SINE Alu 9 80 -37 2 959 593 225 29 7 chr6 49101511 49101650 -100415387 - B1_Mur1 SINE Alu -6 143 2 2 959 1041 105 23 12 chr6 49102141 49102284 -100414753 + B2_Mm2 SINE B2 2 145 -50 2 959 315 0 0 0 chr6 49102284 49102319 -100414718 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 959 1041 105 23 12 chr6 49102319 49102348 -100414689 + B2_Mm2 SINE B2 146 176 -19 2 959 231 200 49 16 chr6 49102712 49102773 -100414264 + MLT1A0 LTR MaLR 57 119 -246 2 959 813 76 160 0 chr6 49102808 49102927 -100414110 + B1_Mus2 SINE Alu 1 138 -9 2 959 489 161 0 0 chr6 49102944 49103031 -100414006 + A-rich Low_complexity Low_complexity 1 87 0 2 959 246 320 62 44 chr6 49103056 49103216 -100413821 + MLT1A0 LTR MaLR 203 365 0 2 959 276 331 95 7 chr6 49103393 49103530 -100413507 + B4 SINE B4 6 154 -138 2 959 734 116 204 0 chr6 49103543 49103690 -100413347 + URR1A DNA MER1_type 5 181 -45 2 959 641 219 14 28 chr6 49103688 49103829 -100413208 + B1_Mur1 SINE Alu 11 149 0 2 959 336 299 35 0 chr6 49104346 49104433 -100412604 + PB1 SINE Alu 7 96 -31 2 959 551 198 178 78 chr6 49104509 49104739 -100412298 + B4A SINE B4 40 292 0 2 959 238 280 151 0 chr6 49104991 49105084 -100411953 - B3A SINE B2 -70 125 19 2 959 1564 229 117 2 chr6 49105145 49105557 -100411480 + RCHARR1 DNA MER1_type 40 498 -476 2 959 279 0 0 0 chr6 49105652 49105683 -100411354 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2 959 310 224 13 0 chr6 49105683 49105759 -100411278 + RCHARR1 DNA MER1_type 524 600 -374 2 959 261 0 0 0 chr6 49105803 49105832 -100411205 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 959 469 229 75 18 chr6 49105892 49106059 -100410978 - ORR1D2 LTR MaLR 0 370 163 2 959 1804 248 165 60 chr6 49106061 49106842 -100410195 - ORR1D2-int LTR MaLR -506 864 2 2 959 655 279 102 54 chr6 49106848 49107162 -100409875 - ORR1D2 LTR MaLR -41 329 1 2 959 439 314 47 123 chr6 49107174 49107410 -100409627 + B4 SINE B4 57 274 -18 2 959 672 124 0 0 chr6 49107412 49107517 -100409520 + (CA)n Simple_repeat Simple_repeat 1 105 0 2 959 1642 21 16 0 chr6 49108064 49108252 -100408785 + B2_Mm1a SINE B2 2 192 -1 2 959 309 211 25 50 chr6 49109060 49109140 -100407897 + L1MD2 LINE L1 24 101 -6446 2 959 439 297 131 18 chr6 49109605 49109996 -100407041 + L1MD2 LINE L1 839 1272 -5368 2 959 275 220 0 17 chr6 49110466 49110526 -100406511 + B3A SINE B2 1 59 -139 2 959 443 257 19 71 chr6 49110548 49110703 -100406334 + RSINE1 SINE B4 19 165 0 2 959 631 253 83 18 chr6 49110806 49110975 -100406062 + B3 SINE B2 28 207 -9 2 959 223 302 0 87 chr6 49111149 49111218 -100405819 + ID2 SINE ID 2 64 -19 2 959 697 192 0 0 chr6 49111356 49111481 -100405556 + B1_Mur4 SINE Alu 16 140 -10 2 959 204 67 0 0 chr6 49111481 49111511 -100405526 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 959 189 147 0 0 chr6 49111543 49111577 -100405460 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2 959 21 0 0 0 chr6 49112707 49112728 -100404309 + AT_rich Low_complexity Low_complexity 1 21 0 2 959 1237 34 7 0 chr6 49112728 49112874 -100404163 - B1_Mus1 SINE Alu 0 148 2 2 959 365 273 30 0 chr6 49112875 49112974 -100404063 - RSINE1 SINE B4 -45 120 19 2 959 319 195 0 61 chr6 49113423 49113505 -100403532 + MT2B LTR ERVL 188 264 -337 2 959 791 56 0 0 chr6 49113432 49113540 -100403497 + B1_Mm SINE Alu 40 147 0 2 959 236 265 0 0 chr6 49114299 49114348 -100402689 + RSINE1 SINE B4 4 52 -113 2 959 362 202 96 0 chr6 49115751 49115763 -100401274 - PB1D9 SINE Alu -1 119 108 2 959 239 0 0 31 chr6 49115763 49115795 -100401242 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 2 959 362 202 96 0 chr6 49115795 49115876 -100401161 - PB1D9 SINE Alu -13 107 18 2 959 515 206 20 0 chr6 49115940 49116042 -100400995 + RSINE1 SINE B4 1 104 -61 2 959 314 278 47 5 chr6 49116580 49116700 -100400337 + B1F SINE Alu 8 135 -14 2 959 21 36 0 0 chr6 49116718 49116746 -100400291 + AT_rich Low_complexity Low_complexity 1 28 0 2 959 397 259 26 26 chr6 49116843 49116958 -100400079 + PB1D10 SINE Alu 3 117 0 2 959 467 262 99 20 chr6 49117768 49117920 -100399117 + RSINE1 SINE B4 2 165 0 2 959 418 278 28 0 chr6 49119108 49119216 -100397821 + B3A SINE B2 7 117 -81 2 959 327 141 0 0 chr6 49119265 49119329 -100397708 + B1_Mus2 SINE Alu 5 68 -79 2 959 279 0 0 0 chr6 49119345 49119376 -100397661 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 2 959 378 0 0 0 chr6 49119724 49119766 -100397271 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2 959 334 264 4 0 chr6 49119861 49119946 -100397091 + PB1D10 SINE Alu 12 96 -21 2 959 234 174 0 0 chr6 49119947 49119993 -100397044 + (CAT)n Simple_repeat Simple_repeat 2 47 0 2 959 1129 69 7 0 chr6 49120059 49120204 -100396833 + B1_Mus2 SINE Alu 2 147 0 2 959 824 165 22 15 chr6 49120218 49120353 -100396684 - B1_Mur4 SINE Alu -13 137 2 2 959 427 274 42 17 chr6 49120403 49120522 -100396515 + B4 SINE B4 2 123 -169 2 959 1244 41 0 0 chr6 49121005 49121152 -100395885 + B1_Mus1 SINE Alu 2 148 0 2 959 293 270 157 0 chr6 49121671 49121760 -100395277 + ID_B1 SINE B4 85 187 -37 2 959 354 214 49 39 chr6 49121987 49122089 -100394948 + B1F SINE Alu 20 122 -27 2 959 249 216 26 18 chr6 49122946 49123059 -100393978 + GA-rich Low_complexity Low_complexity 1 114 0 2 959 351 0 0 0 chr6 49123333 49123372 -100393665 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 959 889 132 37 25 chr6 49123536 49123723 -100393314 + B2_Mm2 SINE B2 2 197 -1 2 959 555 242 114 0 chr6 49124458 49124590 -100392447 + B1_Mur1 SINE Alu 2 148 -1 2 959 714 82 0 0 chr6 49124590 49124688 -100392349 + (GA)n Simple_repeat Simple_repeat 2 99 0 2 959 435 234 19 19 chr6 49124722 49124848 -100392189 + B1F1 SINE Alu 7 141 -8 2 959 286 314 23 0 chr6 49124920 49125006 -100392031 + PB1D10 SINE Alu 1 88 -29 2 959 454 270 146 0 chr6 49125108 49125245 -100391792 + RSINE1 SINE B4 6 162 -3 2 959 342 0 0 0 chr6 49125361 49125399 -100391638 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 959 599 144 0 9 chr6 49125532 49125644 -100391393 + GA-rich Low_complexity Low_complexity 3 113 0 2 959 227 268 70 0 chr6 49125712 49125783 -100391254 - B1F SINE Alu -9 140 65 2 959 662 196 53 0 chr6 49125807 49125940 -100391097 - B1_Mur2 SINE Alu 0 149 10 2 959 338 241 24 97 chr6 49127085 49127209 -100389828 + MTE2b LTR MaLR 16 130 -249 2 959 317 261 66 16 chr6 49127120 49127241 -100389796 + MT2A LTR ERVL 40 166 -367 2 959 1132 75 0 0 chr6 49127508 49127655 -100389382 + B1_Mus2 SINE Alu 1 147 0 2 959 574 184 31 39 chr6 49128245 49128375 -100388662 + B1_Mur4 SINE Alu 4 132 -18 2 959 304 287 149 35 chr6 49128887 49129028 -100388009 + B4A SINE B4 48 204 -88 2 959 491 227 40 66 chr6 49129478 49129629 -100387408 + B1_Mm SINE Alu 1 147 0 2 959 385 321 87 22 chr6 49130030 49130259 -100386778 + B4A SINE B4 48 291 -1 2 959 427 205 71 0 chr6 49130331 49130443 -100386594 + B1F SINE Alu 23 142 -7 2 959 239 250 14 27 chr6 49130755 49130829 -100386208 - BC1_Mm scRNA scRNA -79 73 1 2 959 245 241 37 0 chr6 49130932 49130986 -100386051 + RSINE1 SINE B4 2 57 -108 2 959 2710 40 3 0 chr6 49131070 49131393 -100385644 + L1Md_F2 LINE L1 6257 6580 -2 2 959 364 250 68 68 chr6 49131544 49131556 -100385481 + ID_B1 SINE B4 79 221 0 2 959 761 145 69 0 chr6 49131556 49131687 -100385350 + B1_Mus1 SINE Alu 8 147 -1 2 959 323 192 0 13 chr6 49131728 49131807 -100385230 + GA-rich Low_complexity Low_complexity 2 79 0 2 959 235 206 203 15 chr6 49131823 49131956 -100385081 + Charlie5 DNA MER1_type 2463 2620 -4 2 959 709 252 28 3 chr6 49132105 49132292 -100384745 + B3 SINE B2 10 213 -3 2 959 1492 62 16 5 chr6 49132588 49132781 -100384256 - B2_Mm2 SINE B2 0 195 1 2 959 868 208 19 24 chr6 49132799 49133011 -100384026 - B3 SINE B2 -4 212 2 2 959 1409 74 26 5 chr6 49133108 49133299 -100383738 - B2_Mm2 SINE B2 0 195 1 2 959 949 220 33 14 chr6 49133300 49133512 -100383525 - B3 SINE B2 0 216 1 2 959 959 146 208 0 chr6 49133529 49133707 -100383330 + B3 SINE B2 2 216 0 2 959 854 169 14 0 chr6 49133964 49134112 -100382925 + B1_Mur4 SINE Alu 1 150 0 2 959 267 259 84 12 chr6 49134196 49134307 -100382730 + PB1D10 SINE Alu 25 142 -8 2 959 1496 63 11 0 chr6 49134352 49134543 -100382494 + B2_Mm1t SINE B2 1 193 0 2 959 243 0 0 0 chr6 49134583 49134610 -100382427 + (T)n Simple_repeat Simple_repeat 1 27 0 2 959 1315 82 16 16 chr6 49134625 49134811 -100382226 + B2_Mm2 SINE B2 2 187 -8 2 959 373 257 50 0 chr6 49134918 49135019 -100382018 - PB1D10 SINE Alu -9 108 3 2 959 265 197 53 66 chr6 49135073 49135149 -100381888 + PB1D10 SINE Alu 34 108 -9 2 959 23 0 0 0 chr6 49135162 49135185 -100381852 + AT_rich Low_complexity Low_complexity 1 23 0 2 959 244 297 43 21 chr6 49135198 49135291 -100381746 + PB1D10 SINE Alu 21 115 -2 2 959 216 273 0 0 chr6 49135300 49135344 -100381693 + ID4 SINE ID 2 45 -38 2 959 1137 128 0 0 chr6 49135355 49135535 -100381502 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 959 261 247 49 12 chr6 49135712 49135794 -100381243 + RSINE1 SINE B4 79 163 -2 3 959 1380 199 89 82 chr6 49135901 49136149 -100380888 - MTD LTR MaLR 0 419 161 3 959 3001 38 0 0 chr6 49136149 49136494 -100380543 - ORR1A1 LTR MaLR -1 345 1 3 959 1380 199 89 82 chr6 49136494 49136661 -100380376 - MTD LTR MaLR -259 160 1 3 959 967 216 34 0 chr6 49137385 49137589 -100379448 + B3 SINE B2 4 214 -2 3 959 1732 26 0 0 chr6 49137863 49138056 -100378981 - B2_Mm1a SINE B2 0 193 1 3 959 333 0 0 0 chr6 49138057 49138094 -100378943 + (T)n Simple_repeat Simple_repeat 1 37 0 3 959 1244 28 7 0 chr6 49138396 49138541 -100378496 + B1_Mm SINE Alu 2 147 0 3 959 180 0 0 0 chr6 49138542 49138562 -100378475 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 3 959 533 238 127 0 chr6 49138593 49138719 -100378318 + B1_Mur2 SINE Alu 1 142 -7 3 959 716 172 213 49 chr6 49138827 49139010 -100378027 + B3 SINE B2 4 216 0 3 959 1194 56 0 0 chr6 49139017 49139161 -100377876 + B1_Mus2 SINE Alu 2 145 -2 3 959 215 103 26 0 chr6 49139162 49139201 -100377836 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 959 1399 131 259 0 chr6 49139406 49139703 -100377334 + ORR1D1 LTR MaLR 1 374 0 3 959 297 198 39 157 chr6 49139793 49139895 -100377142 + MT2B LTR ERVL 151 240 -361 3 959 361 172 158 122 chr6 49139807 49139946 -100377091 + ID_B1 SINE B4 79 222 -2 3 959 534 139 172 47 chr6 49139823 49139951 -100377086 + B1_Mur1 SINE Alu 6 149 0 3 959 307 39 58 0 chr6 49139952 49140004 -100377033 + (CAAAAA)n Simple_repeat Simple_repeat 3 57 0 3 959 519 199 302 6 chr6 49140018 49140180 -100376857 + B3 SINE B2 1 210 -6 3 959 407 257 31 50 chr6 49140318 49140478 -100376559 + RSINE1 SINE B4 5 161 -4 3 959 405 236 27 67 chr6 49140798 49140948 -100376089 + RSINE1 SINE B4 22 165 0 3 959 1382 95 16 0 chr6 49141169 49141358 -100375679 + B2_Mm2 SINE B2 1 192 -3 3 959 989 70 27 27 chr6 49141358 49141503 -100375534 + B1_Mus2 SINE Alu 1 146 -1 3 959 507 233 0 32 chr6 49141533 49141657 -100375380 + B1_Mur4 SINE Alu 17 136 -14 3 959 457 246 16 16 chr6 49141690 49141818 -100375219 + B3A SINE B2 71 198 0 3 959 730 239 49 15 chr6 49142021 49142225 -100374812 + B3 SINE B2 5 215 -1 3 959 243 245 0 0 chr6 49142241 49142252 -100374785 + B4A SINE B4 82 130 -162 3 959 247 158 0 0 chr6 49142252 49142290 -100374747 + B1_Mus1 SINE Alu 9 46 -102 3 959 225 196 0 0 chr6 49142297 49142343 -100374694 + A-rich Low_complexity Low_complexity 5 50 0 3 959 1600 5 0 83 chr6 49142361 49142566 -100374471 + B2_Mm1a SINE B2 1 188 -5 3 959 268 308 140 49 chr6 49142612 49142776 -100374261 + B4A SINE B4 53 231 -61 3 959 516 174 168 31 chr6 49142957 49143134 -100373903 + RLTR20A2 LTR ERVK 61 252 -326 3 959 434 198 0 138 chr6 49143214 49143337 -100373700 + B1F SINE Alu 33 138 -11 3 959 1362 46 56 22 chr6 49143347 49143526 -100373511 - B2_Mm2 SINE B2 -9 186 2 3 959 371 171 28 9 chr6 49143915 49144021 -100373016 + GA-rich Low_complexity Low_complexity 4 111 0 3 959 1756 158 52 27 chr6 49144459 49144824 -100372213 - ORR1D1 LTR MaLR 0 374 1 3 959 536 278 37 53 chr6 49144869 49145059 -100371978 - B3 SINE B2 -28 188 2 3 959 232 265 172 10 chr6 49145699 49145798 -100371239 - PB1D10 SINE Alu 0 117 3 3 959 370 333 64 36 chr6 49145798 49146040 -100370997 + Charlie1a DNA MER1_type 456 704 -751 3 959 896 185 61 10 chr6 49146170 49146367 -100370670 + B3 SINE B2 2 208 -8 3 959 23 0 0 0 chr6 49146367 49146390 -100370647 + AT_rich Low_complexity Low_complexity 1 23 0 3 959 1851 105 66 41 chr6 49146402 49146719 -100370318 + ORR1A4 LTR MaLR 5 329 0 3 959 1664 182 87 17 chr6 49146726 49146882 -100370155 + ORR1D1 LTR MaLR 3 161 -213 3 959 705 56 0 0 chr6 49146882 49146972 -100370065 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 959 1664 182 87 17 chr6 49146972 49147162 -100369875 + ORR1D1 LTR MaLR 162 372 -2 3 959 718 204 0 28 chr6 49147179 49147320 -100369717 + B1_Mur4 SINE Alu 6 142 -8 3 959 1024 191 134 4 chr6 49147334 49147596 -100369441 + ORR1D1-int LTR MaLR 1 296 -1074 3 959 203 0 0 36 chr6 49147713 49147741 -100369296 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 959 627 278 149 37 chr6 49148513 49148834 -100368203 - RMER13A LTR ERVK -406 454 98 3 959 2288 155 31 96 chr6 49149594 49149811 -100367226 - MTC LTR MaLR 0 421 217 3 959 1479 84 16 0 chr6 49149811 49150001 -100367036 - B2_Mm2 SINE B2 -1 194 2 3 959 2288 155 31 96 chr6 49150001 49150029 -100367008 - MTC LTR MaLR -205 216 212 3 959 1174 49 7 0 chr6 49150029 49150173 -100366864 - B1_Mus2 SINE Alu -1 146 2 3 959 2288 155 31 96 chr6 49150173 49150376 -100366661 - MTC LTR MaLR -210 211 1 3 959 378 0 0 0 chr6 49150564 49150606 -100366431 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 959 657 191 47 13 chr6 49150607 49150756 -100366281 + B2_Mm2 SINE B2 38 191 -4 3 959 292 170 0 0 chr6 49150801 49150848 -100366189 + B1F SINE Alu 98 144 -5 3 959 676 179 16 16 chr6 49150937 49151062 -100365975 + B2_Mm2 SINE B2 4 128 -67 3 959 465 19 0 0 chr6 49151088 49151142 -100365895 + (CATA)n Simple_repeat Simple_repeat 2 55 0 3 959 280 296 0 0 chr6 49151215 49151286 -100365751 + RSINE1 SINE B4 89 159 -6 3 959 748 266 32 5 chr6 49151401 49151586 -100365451 + B3A SINE B2 9 198 0 3 959 587 280 30 49 chr6 49151593 49151796 -100365241 + B3 SINE B2 9 207 -9 3 959 332 263 101 42 chr6 49151813 49151932 -100365105 + PB1 SINE Alu 1 126 -1 3 119 231 36 0 0 chr6 49151994 49152022 -100365015 + (GTTTG)n Simple_repeat Simple_repeat 4 31 0 3 960 605 144 54 0 chr6 49152060 49152171 -100364866 - B1_Mur4 SINE Alu -8 142 26 3 960 306 245 58 58 chr6 49152332 49152436 -100364601 - PB1D10 SINE Alu -8 109 6 3 960 497 214 128 15 chr6 49152598 49152731 -100364306 - B1_Mur1 SINE Alu -1 148 1 3 960 721 241 79 35 chr6 49152895 49153097 -100363940 + B3 SINE B2 2 212 -4 3 960 296 221 174 0 chr6 49153519 49153605 -100363432 - PB1D9 SINE Alu -19 101 1 3 960 1481 63 32 0 chr6 49153632 49153821 -100363216 + B2_Mm2 SINE B2 1 195 0 3 960 1421 77 16 0 chr6 49154317 49154499 -100362538 - B2_Mm2 SINE B2 -8 187 3 3 960 514 180 163 63 chr6 49154524 49154714 -100362323 - B3 SINE B2 -3 213 5 3 960 455 243 27 81 chr6 49155016 49155164 -100361873 + B1F SINE Alu 1 140 -9 3 960 1185 36 0 0 chr6 49155299 49155437 -100361600 + B1_Mus2 SINE Alu 1 138 -9 3 960 255 250 15 15 chr6 49155752 49155817 -100361220 + B1_Mus2 SINE Alu 6 70 -77 3 960 574 222 195 27 chr6 49155822 49156007 -100361030 - B3 SINE B2 0 216 1 3 960 990 224 28 19 chr6 49156394 49156608 -100360429 - B3 SINE B2 0 216 1 3 960 212 264 252 29 chr6 49156777 49157023 -100360014 + L2 LINE L2 2275 2575 -844 3 960 249 312 12 38 chr6 49157170 49157250 -100359787 - ID4_ SINE ID -4 79 2 3 960 425 218 58 84 chr6 49157789 49157944 -100359093 + B4A SINE B4 74 224 -68 3 960 1043 50 0 0 chr6 49157807 49157947 -100359090 + B1_Mus1 SINE Alu 9 148 0 3 960 513 71 0 0 chr6 49157948 49158018 -100359019 + (GAAAA)n Simple_repeat Simple_repeat 4 73 0 3 960 198 0 0 0 chr6 49160285 49160307 -100356730 + (A)n Simple_repeat Simple_repeat 1 22 0 3 960 227 259 0 0 chr6 49161639 49161693 -100355344 - ID4_ SINE ID -28 55 2 3 960 273 146 0 0 chr6 49162489 49162537 -100354500 + (G)n Simple_repeat Simple_repeat 1 48 0 3 960 208 135 0 0 chr6 49162728 49162765 -100354272 + (A)n Simple_repeat Simple_repeat 1 37 0 3 960 21 0 0 0 chr6 49164171 49164192 -100352845 + GC_rich Low_complexity Low_complexity 1 21 0 3 960 219 69 0 0 chr6 49165014 49165043 -100351994 + (A)n Simple_repeat Simple_repeat 1 29 0 3 960 21 0 0 0 chr6 49165418 49165439 -100351598 + GC_rich Low_complexity Low_complexity 1 21 0 3 960 22 70 0 0 chr6 49165563 49165606 -100351431 + GC_rich Low_complexity Low_complexity 1 43 0 3 960 22 35 0 0 chr6 49168883 49168912 -100348125 + AT_rich Low_complexity Low_complexity 1 29 0 3 960 21 0 0 0 chr6 49170768 49170789 -100346248 + AT_rich Low_complexity Low_complexity 1 21 0 3 960 421 197 66 2 chr6 49170994 49171118 -100345919 - B1F1 SINE Alu 0 147 14 3 960 211 128 26 0 chr6 49171769 49171808 -100345229 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3 960 301 97 48 0 chr6 49173035 49173097 -100343940 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 3 960 576 177 161 0 chr6 49173097 49173221 -100343816 - B1_Mus2 SINE Alu 0 147 4 3 960 221 233 0 0 chr6 49173304 49173347 -100343690 + GA-rich Low_complexity Low_complexity 3 45 0 3 960 396 267 33 55 chr6 49173715 49173897 -100343140 - L1MA6 LINE L1 0 6300 6123 3 960 842 182 7 0 chr6 49174116 49174259 -100342778 + B1_Mus2 SINE Alu 2 145 -2 3 960 213 139 0 0 chr6 49175306 49175349 -100341688 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 960 1291 20 0 0 chr6 49176142 49176289 -100340748 + B1_Mus2 SINE Alu 1 147 0 3 960 180 0 0 0 chr6 49176289 49176309 -100340728 + (A)n Simple_repeat Simple_repeat 1 20 0 3 960 844 155 20 34 chr6 49176696 49176843 -100340194 - B1_Mus1 SINE Alu -1 147 3 3 960 184 0 97 0 chr6 49176917 49176948 -100340089 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 960 223 250 33 0 chr6 49178482 49178542 -100338495 + PB1 SINE Alu 1 62 -65 3 960 366 23 0 0 chr6 49179166 49179209 -100337828 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 960 234 0 0 0 chr6 49179209 49179234 -100337803 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 960 342 0 0 0 chr6 49179403 49179441 -100337596 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 960 1198 95 56 6 chr6 49179471 49179651 -100337386 - B2_Mm2 SINE B2 -6 189 1 4 960 234 143 40 20 chr6 49180032 49180082 -100336955 + CT-rich Low_complexity Low_complexity 6 56 0 4 960 8047 48 4 11 chr6 49180176 49181167 -100335870 - L1Md_F2 LINE L1 -3 6579 5596 4 960 231 265 88 97 chr6 49181208 49181321 -100335716 - PB1D10 SINE Alu 0 117 6 4 960 236 303 40 0 chr6 49181358 49181434 -100335603 - ID SINE ID -142 82 4 4 960 373 298 54 41 chr6 49181559 49181706 -100335331 - B4A SINE B4 -93 199 51 4 960 277 300 14 0 chr6 49181690 49181760 -100335277 + B3 SINE B2 95 165 -51 4 960 330 98 0 0 chr6 49181760 49181811 -100335226 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 960 963 129 0 13 chr6 49181921 49182070 -100334967 - B1_Mus2 SINE Alu 0 147 1 4 960 333 234 12 58 chr6 49182444 49182530 -100334507 - B3 SINE B2 0 216 135 4 960 273 120 0 20 chr6 49182539 49182590 -100334447 - B2_Mm1t SINE B2 -143 50 1 4 960 254 125 0 0 chr6 49182590 49182629 -100334408 - B2_Mm2 SINE B2 -156 39 1 4 960 450 216 216 91 chr6 49182630 49182821 -100334216 + ORR1C2 LTR MaLR 40 271 -113 4 960 1216 41 0 13 chr6 49182821 49182970 -100334067 + B1_Mm SINE Alu 1 147 0 4 960 450 216 216 91 chr6 49182970 49183032 -100334005 + ORR1C2 LTR MaLR 272 325 -59 4 960 297 68 0 0 chr6 49183033 49183077 -100333960 + (T)n Simple_repeat Simple_repeat 1 44 0 4 960 1276 20 0 0 chr6 49183077 49183224 -100333813 - B1_Mus2 SINE Alu 0 147 1 4 960 382 119 60 0 chr6 49183224 49183291 -100333746 + ORR1C2 LTR MaLR 314 384 0 4 960 535 206 102 16 chr6 49183291 49183418 -100333619 - B3 SINE B2 -78 138 1 4 960 776 203 35 11 chr6 49183446 49183620 -100333417 - B3 SINE B2 -5 211 34 4 960 323 255 46 28 chr6 49183624 49183733 -100333304 - B1F1 SINE Alu -38 111 1 4 960 959 145 58 53 chr6 49184028 49184217 -100332820 + B2_Mm2 SINE B2 3 192 -3 4 960 414 277 66 44 chr6 49184236 49184372 -100332665 - ID_B1 SINE B4 0 224 86 4 960 1345 94 11 0 chr6 49184381 49184562 -100332475 + B2_Mm2 SINE B2 4 186 -9 4 960 439 277 66 102 chr6 49184570 49184797 -100332240 + L1M3 LINE L1 4471 4698 -1442 4 960 1042 73 0 49 chr6 49184797 49184940 -100332097 + B1_Mus2 SINE Alu 1 136 -11 4 960 792 32 0 0 chr6 49184940 49185035 -100332002 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 4 960 439 277 66 102 chr6 49185035 49185140 -100331897 + L1M3 LINE L1 4699 4791 -1349 4 960 524 189 156 0 chr6 49185143 49185265 -100331772 + B1_Mm SINE Alu 5 145 -2 4 960 1037 65 0 0 chr6 49185500 49185638 -100331399 - B1_Mm SINE Alu -1 146 9 4 960 688 167 43 14 chr6 49185623 49185763 -100331274 + B1_Mur1 SINE Alu 6 149 0 4 960 1511 63 5 0 chr6 49185765 49185954 -100331083 + B2_Mm1t SINE B2 1 190 -3 4 960 544 182 13 105 chr6 49186046 49186199 -100330838 + B1_Mur2 SINE Alu 8 146 -3 4 960 560 207 8 47 chr6 49186323 49186450 -100330587 + B3 SINE B2 3 124 -92 4 960 1553 0 0 0 chr6 49186450 49186616 -100330421 - LSU-rRNA_Hsa rRNA rRNA -658 4377 4212 4 960 910 108 0 0 chr6 49186693 49186832 -100330205 + B1_Mus2 SINE Alu 9 147 0 4 960 922 56 0 0 chr6 49186853 49186979 -100330058 + B1_Mus2 SINE Alu 1 126 -21 4 960 237 65 0 0 chr6 49187050 49187081 -100329956 + (A)n Simple_repeat Simple_repeat 1 31 0 4 960 231 88 0 0 chr6 49187089 49187123 -100329914 + L1M2 LINE L1 5571 5604 -687 4 960 1227 27 14 0 chr6 49187126 49187273 -100329764 + B1_Mur4 SINE Alu 2 150 0 4 960 203 0 37 0 chr6 49187274 49187301 -100329736 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 4 960 238 320 0 0 chr6 49187348 49187423 -100329614 + L1M3 LINE L1 5722 5796 -495 4 960 31 26 0 0 chr6 49187598 49187636 -100329401 + AT_rich Low_complexity Low_complexity 1 38 0 4 960 978 81 194 0 chr6 49187724 49187884 -100329153 + B2_Mm2 SINE B2 2 192 -3 4 960 270 268 0 79 chr6 49187927 49188016 -100329021 - RSINE1 SINE B4 -2 163 82 4 960 356 224 26 113 chr6 49188041 49188192 -100328845 - B4A SINE B4 -154 138 1 4 960 325 281 62 0 chr6 49188351 49188447 -100328590 - PB1D9 SINE Alu 0 120 19 4 960 366 219 0 0 chr6 49188456 49188536 -100328501 + B1_Mur3 SINE Alu 57 136 -13 4 960 357 24 0 0 chr6 49188536 49188578 -100328459 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 4 960 890 71 0 8 chr6 49188615 49188743 -100328294 + (TTC)n Simple_repeat Simple_repeat 1 127 0 4 960 866 80 48 0 chr6 49188743 49188868 -100328169 - B1_Mus1 SINE Alu -12 136 6 4 960 311 193 48 12 chr6 49188897 49188981 -100328056 - B3 SINE B2 -11 205 119 4 960 337 200 232 18 chr6 49189042 49189154 -100327883 - B1_Mus2 SINE Alu -1 146 11 4 960 216 236 18 0 chr6 49189155 49189210 -100327827 - B3 SINE B2 -114 102 47 4 960 377 257 39 19 chr6 49189221 49189324 -100327713 - PB1D7 SINE Alu -1 119 15 4 960 296 219 156 0 chr6 49189636 49189732 -100327305 + PB1D10 SINE Alu 2 112 -5 4 960 366 190 24 37 chr6 49189811 49189893 -100327144 - RSINE1 SINE B4 -83 82 2 4 960 882 75 27 14 chr6 49189987 49190135 -100326902 - B2_Mm2 SINE B2 -2 193 44 4 960 464 181 117 0 chr6 49190116 49190210 -100326827 - B1_Mur3 SINE Alu -32 117 13 4 960 236 286 14 14 chr6 49190157 49190228 -100326809 - B4 SINE B4 -142 150 80 4 960 45 19 0 0 chr6 49190228 49190280 -100326757 + AT_rich Low_complexity Low_complexity 1 52 0 4 960 6023 123 18 26 chr6 49190305 49191271 -100325766 - RMER17B LTR ERVK 0 958 1 4 960 1387 245 82 77 chr6 49191303 49191768 -100325269 - Lx9 LINE L1 -174 7470 7004 4 960 225 0 0 0 chr6 49191769 49191794 -100325243 + (T)n Simple_repeat Simple_repeat 1 25 0 4 960 625 46 11 0 chr6 49191794 49191881 -100325156 - B1_Mus2 SINE Alu 0 147 60 4 960 300 200 31 0 chr6 49191880 49191945 -100325092 - MTD LTR MaLR -157 262 196 4 960 1810 249 137 19 chr6 49191959 49192632 -100324405 - Lx4B LINE L1 -16 7042 6291 4 960 965 189 227 3 chr6 49192632 49192914 -100324123 - Lx5 LINE L1 -818 6232 5888 4 960 674 55 18 18 chr6 49193312 49193422 -100323615 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 4 960 311 195 75 38 chr6 49193423 49193503 -100323534 - B1_Mus1 SINE Alu -41 107 25 4 960 477 0 0 0 chr6 49193523 49193576 -100323461 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 960 22 0 0 0 chr6 49193622 49193644 -100323393 + AT_rich Low_complexity Low_complexity 1 22 0 4 960 544 217 144 21 chr6 49193679 49193867 -100323170 + B3 SINE B2 2 212 -4 4 960 188 35 35 0 chr6 49194984 49195013 -100322024 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 960 506 210 102 24 chr6 49195026 49195153 -100321884 + B1_Mur1 SINE Alu 12 148 -1 4 960 192 185 0 0 chr6 49195551 49195605 -100321432 + (CCA)n Simple_repeat Simple_repeat 2 55 0 4 960 563 226 75 8 chr6 49195755 49195889 -100321148 + B3A SINE B2 5 147 -51 4 960 399 277 30 55 chr6 49195912 49196076 -100320961 + ID_B1 SINE B4 65 224 0 4 960 688 201 7 7 chr6 49195942 49196077 -100320960 + B1_Mur4 SINE Alu 16 150 0 4 960 379 278 25 34 chr6 49196161 49196280 -100320757 + RSINE1 SINE B4 2 119 -46 4 960 252 283 17 0 chr6 49196569 49196629 -100320408 - B3A SINE B2 -137 61 1 4 960 261 298 126 11 chr6 49197168 49197263 -100319774 - PB1D7 SINE Alu -10 110 5 4 960 304 250 15 0 chr6 49197672 49197740 -100319297 + B1F2 SINE Alu 14 82 -67 4 960 1037 30 104 0 chr6 49198225 49198359 -100318678 + B1_Mur4 SINE Alu 3 150 0 4 960 195 69 0 0 chr6 49198364 49198393 -100318644 + (A)n Simple_repeat Simple_repeat 1 29 0 4 960 344 91 70 0 chr6 49198440 49198502 -100318535 - B2_Mm2 SINE B2 -82 116 46 4 960 1297 76 35 0 chr6 49198519 49198691 -100318346 - B2_Mm1t SINE B2 -14 179 2 4 960 724 98 71 0 chr6 49199385 49199497 -100317540 - PB1D9 SINE Alu 0 120 1 4 960 434 275 50 0 chr6 49199523 49199643 -100317394 - ID_B1 SINE B4 -97 127 2 4 960 809 205 116 0 chr6 49199670 49199860 -100317177 + B3 SINE B2 1 212 -4 4 960 255 331 148 47 chr6 49200202 49200351 -100316686 - RSINE1 SINE B4 0 165 2 4 960 1481 114 168 27 chr6 49200442 49200776 -100316261 + RMER6A LTR ERVK 292 672 -84 4 960 639 242 82 92 chr6 49201060 49201256 -100315781 + B3 SINE B2 2 195 0 4 960 1121 100 47 62 chr6 49201290 49201482 -100315555 + B2_Mm2 SINE B2 1 189 -6 4 960 229 318 0 0 chr6 49201632 49201698 -100315339 + B3A SINE B2 9 74 -124 4 960 443 291 89 58 chr6 49201767 49201957 -100315080 - B3A SINE B2 -1 197 2 4 960 1078 76 14 0 chr6 49201962 49202107 -100314930 - B1_Mus2 SINE Alu 0 147 1 4 960 39 38 0 0 chr6 49203224 49203277 -100313760 + AT_rich Low_complexity Low_complexity 1 53 0 4 960 470 248 102 16 chr6 49204185 49204312 -100312725 - ID_B1 SINE B4 -86 138 1 4 960 655 118 91 0 chr6 49204577 49204687 -100312350 + B3 SINE B2 11 130 -86 4 960 1178 74 0 0 chr6 49204741 49204889 -100312148 + B1_Mus1 SINE Alu 1 148 0 4 960 250 311 0 32 chr6 49205279 49205342 -100311695 - RSINE1 SINE B4 -103 62 2 4 960 22 0 0 0 chr6 49205590 49205612 -100311425 + AT_rich Low_complexity Low_complexity 1 22 0 4 960 1739 16 0 0 chr6 49206293 49206485 -100310552 - B2_Mm1a SINE B2 0 193 2 4 960 253 159 95 0 chr6 49206908 49206971 -100310066 + ID SINE ID 2 70 -154 4 960 215 315 0 0 chr6 49207882 49207936 -100309101 - RSINE1 SINE B4 -85 80 27 5 960 251 178 0 0 chr6 49208060 49208105 -100308932 - PB1D9 SINE Alu -75 45 1 5 960 241 170 0 131 chr6 49208105 49208120 -100308917 - B4 SINE B4 -164 127 76 5 960 462 311 116 0 chr6 49208113 49208277 -100308760 - B3A SINE B2 -15 183 1 5 960 220 333 77 44 chr6 49208320 49208411 -100308626 - B3A SINE B2 -57 141 48 5 960 430 103 392 0 chr6 49208546 49208653 -100308384 - B1_Mur3 SINE Alu 0 149 1 5 960 1456 63 0 25 chr6 49208659 49208855 -100308182 - B2_Mm2 SINE B2 -4 191 1 5 960 441 242 49 37 chr6 49208861 49209024 -100308013 - B3 SINE B2 -1 215 51 5 960 24 0 0 0 chr6 49209024 49209048 -100307989 + AT_rich Low_complexity Low_complexity 1 24 0 5 960 255 180 0 90 chr6 49209048 49209115 -100307922 - B3A SINE B2 -136 62 2 5 960 593 259 99 41 chr6 49209297 49209518 -100307519 - B4A SINE B4 -55 237 4 5 960 321 206 54 14 chr6 49209781 49209855 -100307182 + PB1D9 SINE Alu 28 104 -16 5 960 263 269 26 80 chr6 49209916 49210029 -100307008 + PB1D10 SINE Alu 3 109 -8 5 960 434 182 51 60 chr6 49210102 49210219 -100306818 - PB1D9 SINE Alu -2 118 3 5 960 597 244 15 23 chr6 49210543 49210673 -100306364 + B3 SINE B2 80 208 -8 5 960 776 140 297 6 chr6 49210882 49211047 -100305990 - B3 SINE B2 -3 213 1 5 960 458 155 136 0 chr6 49211060 49211163 -100305874 - B1_Mus1 SINE Alu -21 127 11 5 960 236 206 31 17 chr6 49211770 49211841 -100305196 + ID4 SINE ID 20 90 -62 5 960 232 213 43 0 chr6 49214200 49214247 -100302790 - B1_Mus2 SINE Alu -98 49 1 5 960 181 109 43 0 chr6 49214326 49214372 -100302665 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 5 960 1185 48 0 20 chr6 49214436 49214586 -100302451 - B1_Mm SINE Alu 0 147 1 5 960 834 101 16 0 chr6 49214685 49214814 -100302223 - B1_Mur4 SINE Alu -13 137 7 5 960 413 145 53 0 chr6 49214818 49214894 -100302143 - MTC LTR MaLR -341 80 1 5 960 257 230 0 69 chr6 49214894 49214961 -100302076 + ID4_ SINE ID 36 97 -55 5 960 217 324 40 81 chr6 49215061 49215209 -100301828 + ID_B1 SINE B4 82 223 -1 5 960 1185 84 6 0 chr6 49215210 49215376 -100301661 - B2_Mm1t SINE B2 -26 167 1 5 960 1717 137 41 66 chr6 49215593 49215959 -100301078 - Lx LINE L1 -6 6648 6292 5 960 359 127 0 37 chr6 49215964 49216046 -100300991 + T-rich Low_complexity Low_complexity 1 79 0 5 960 1186 68 0 0 chr6 49216046 49216193 -100300844 - B1_Mm SINE Alu 0 147 1 5 960 430 267 0 9 chr6 49216246 49216352 -100300685 - PB1D10 SINE Alu -8 109 5 5 960 254 254 0 0 chr6 49216486 49216541 -100300496 + ID4_ SINE ID 2 56 -27 5 960 1032 197 28 33 chr6 49216727 49216942 -100300095 + B3 SINE B2 2 215 -1 5 960 324 0 0 0 chr6 49217072 49217108 -100299929 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 960 1244 227 18 14 chr6 49217135 49217421 -100299616 - RLTR18B LTR ERVK -3 509 223 5 960 2190 181 83 14 chr6 49217423 49217916 -100299121 - RLTR11A2 LTR ERVK 0 527 1 5 960 366 162 135 0 chr6 49217933 49218007 -100299030 - RLTR18B LTR ERVK -308 204 121 5 960 618 106 11 0 chr6 49218027 49218121 -100298916 + B2_Mm1t SINE B2 85 179 -14 5 960 320 138 14 18 chr6 49218152 49218218 -100298819 + B2_Mm2 SINE B2 46 116 -82 5 960 428 218 6 174 chr6 49218241 49218411 -100298626 - RLTR18B LTR ERVK -243 269 129 5 960 3092 113 221 2 chr6 49218411 49219012 -100298025 + RMER19A LTR ERVK 1 877 -25 5 960 467 122 22 22 chr6 49219030 49219122 -100297915 - RLTR18B LTR ERVK -420 92 1 5 960 1077 75 7 0 chr6 49219562 49219708 -100297329 - B1_Mus1 SINE Alu 0 148 2 5 960 522 83 0 0 chr6 49219745 49219817 -100297220 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 960 454 208 225 0 chr6 49219842 49219962 -100297075 - B1_Mm SINE Alu 0 147 1 5 960 356 300 67 0 chr6 49220171 49220321 -100296716 - L1MB7 LINE L1 -109 6075 5916 5 960 2008 123 115 12 chr6 49220556 49220886 -100296151 - Lx4B LINE L1 -1 7057 6694 5 960 1202 101 0 6 chr6 49221038 49221217 -100295820 - B2_Mm2 SINE B2 -4 191 14 5 960 337 282 91 59 chr6 49221233 49221489 -100295548 - LTR84b LTR ERVL -137 624 346 5 960 1593 191 131 48 chr6 49221698 49222110 -100294927 - RLTR41 LTR ERV1 0 446 1 5 960 788 90 186 16 chr6 49222265 49222389 -100294648 - B1_Mus1 SINE Alu -1 147 3 5 960 318 182 0 0 chr6 49222672 49222738 -100294299 + GA-rich Low_complexity Low_complexity 2 67 0 5 960 1494 184 143 13 chr6 49222738 49223137 -100293900 - RMER16 LTR ERVK 0 533 1 5 960 200 111 28 0 chr6 49223140 49223176 -100293861 + (GAA)n Simple_repeat Simple_repeat 1 37 0 5 960 399 216 38 29 chr6 49223260 49223365 -100293672 + PB1D10 SINE Alu 6 111 -6 5 960 908 185 148 38 chr6 49223943 49224207 -100292830 + RLTR9A2 LTR ERVK 6 298 -85 5 960 502 151 10 31 chr6 49224264 49224360 -100292677 + RLTR14 LTR ERV1 3 96 -286 5 960 1155 179 95 55 chr6 49224361 49224687 -100292350 - RMER10B LTR ERVL 0 398 60 5 960 239 104 21 0 chr6 49224735 49224783 -100292254 + (CCCCCA)n Simple_repeat Simple_repeat 2 50 0 5 960 1143 70 0 0 chr6 49225088 49225230 -100291807 + B1_Mm SINE Alu 2 143 -4 5 960 195 42 0 0 chr6 49225230 49225254 -100291783 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 5 960 387 0 0 0 chr6 49225259 49225302 -100291735 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 960 441 36 0 0 chr6 49225302 49225356 -100291681 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 960 199 236 18 18 chr6 49225567 49225623 -100291414 + L2c LINE L2 3294 3349 -38 5 960 255 31 0 0 chr6 49225975 49226007 -100291030 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 960 1083 67 0 0 chr6 49226007 49226141 -100290896 - B1_Mus1 SINE Alu -13 135 2 5 960 238 223 47 37 chr6 49226197 49226304 -100290733 + (TATAA)n Simple_repeat Simple_repeat 2 109 0 5 960 3783 47 45 39 chr6 49226355 49226862 -100290175 - RLTR1B LTR ERV1 0 512 3 5 960 222 264 94 0 chr6 49226864 49226917 -100290120 - RSINE1 SINE B4 -26 139 82 5 960 563 151 176 0 chr6 49227031 49227150 -100289887 + B1_Mur2 SINE Alu 2 141 -8 5 960 483 267 36 29 chr6 49227238 49227377 -100289660 + B1F SINE Alu 9 148 -1 5 960 697 174 7 65 chr6 49227460 49227512 -100289525 - B1_Mus2 SINE Alu -2 145 102 5 960 1314 120 10 0 chr6 49227512 49227704 -100289333 - B2_Mm2 SINE B2 0 195 2 5 960 697 174 7 65 chr6 49227704 49227805 -100289232 - B1_Mus2 SINE Alu -46 101 1 5 960 208 157 59 0 chr6 49227853 49227904 -100289133 + (CAATT)n Simple_repeat Simple_repeat 2 55 0 5 960 22 0 0 0 chr6 49227952 49227974 -100289063 + AT_rich Low_complexity Low_complexity 1 22 0 5 960 241 164 25 152 chr6 49228010 49228089 -100288948 + RLTR19B LTR ERVK 32 100 -615 5 960 1569 183 64 5 chr6 49228164 49228521 -100288516 + RLTR33 LTR ERVK 216 678 0 5 960 219 206 79 0 chr6 49228621 49228684 -100288353 - PB1 SINE Alu 0 127 60 5 960 313 247 14 0 chr6 49228662 49228735 -100288302 + B3 SINE B2 125 198 -18 5 960 317 62 21 0 chr6 49228737 49228785 -100288252 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 5 960 520 266 0 0 chr6 49228789 49228898 -100288139 + RSINE1 SINE B4 5 113 -52 5 960 471 18 0 0 chr6 49228955 49229011 -100288026 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 960 2649 124 65 24 chr6 49229011 49229474 -100287563 + RLTR45 LTR ERVK 1 482 0 5 960 410 281 0 17 chr6 49229611 49229727 -100287310 - PB1D10 SINE Alu 0 117 4 5 960 432 275 0 0 chr6 49229727 49229827 -100287210 - B1_Mur2 SINE Alu -49 100 1 5 960 236 272 142 28 chr6 49229895 49230001 -100287036 - B1F1 SINE Alu -31 118 1 5 960 222 303 71 0 chr6 49230034 49230133 -100286904 - MIR SINE MIR -129 133 28 5 960 993 97 0 7 chr6 49230514 49230659 -100286378 + B2_Mm2 SINE B2 2 145 -50 5 960 225 0 0 0 chr6 49230662 49230687 -100286350 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 5 960 207 281 272 12 chr6 49230776 49230938 -100286099 + MIRb SINE MIR 46 249 -19 5 960 3012 139 49 10 chr6 49230955 49231463 -100285574 + RLTR12B LTR ERVK 1 528 0 5 960 1104 87 0 58 chr6 49231508 49231679 -100285358 - L1_Mus2 LINE L1 -1 6565 6405 5 960 471 95 0 0 chr6 49231736 49231810 -100285227 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 5 960 4843 131 12 36 chr6 49231885 49232640 -100284397 + RMER19A LTR ERVK 1 737 0 5 960 333 0 0 0 chr6 49232667 49232704 -100284333 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 960 407 290 8 41 chr6 49232704 49232816 -100284221 - B3A SINE B2 -50 166 57 5 960 233 288 0 96 chr6 49232957 49233030 -100284007 - B4 SINE B4 -154 138 73 5 960 710 294 59 15 chr6 49233027 49233300 -100283737 - MER90a LTR ERV1 -254 360 76 5 960 252 230 41 103 chr6 49233250 49233347 -100283690 + B1_Mur1 SINE Alu 57 147 -2 5 960 477 219 131 86 chr6 49233469 49233714 -100283323 + B4 SINE B4 2 257 -35 5 960 240 35 0 0 chr6 49233786 49233815 -100283222 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 960 203 32 0 61 chr6 49233818 49233851 -100283186 + (GGGAGA)n Simple_repeat Simple_repeat 2 32 0 5 960 509 227 117 0 chr6 49233959 49234087 -100282950 - B1F SINE Alu 0 149 7 5 960 1223 28 0 14 chr6 49234118 49234265 -100282772 - B1_Mus2 SINE Alu -2 145 1 5 960 743 169 8 0 chr6 49234393 49234523 -100282514 - B1_Mur3 SINE Alu -11 138 8 6 960 395 311 44 65 chr6 49234803 49235143 -100281894 + MLT1H LTR MaLR 9 341 -208 6 960 1324 93 11 0 chr6 49235432 49235614 -100281423 + B2_Mm1a SINE B2 1 184 -9 6 960 1051 51 73 0 chr6 49235751 49235888 -100281149 - B1_Mus2 SINE Alu 0 147 1 6 960 306 220 30 99 chr6 49236188 49236289 -100280748 + PB1D7 SINE Alu 26 119 -1 6 960 1149 69 7 0 chr6 49236504 49236649 -100280388 + B1_Mm SINE Alu 2 147 0 6 960 215 132 0 26 chr6 49236680 49236719 -100280318 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 960 727 114 13 8 chr6 49237265 49237395 -100279642 - B2_Mm2 SINE B2 -65 133 1 6 960 456 19 0 0 chr6 49237405 49237458 -100279579 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 960 457 239 130 42 chr6 49237493 49237685 -100279352 + Kanga1 DNA Tc2 13 222 -1523 6 960 289 244 26 0 chr6 49237699 49237777 -100279260 + Kanga1 DNA Tc2 1308 1387 -358 6 960 339 284 23 0 chr6 49237778 49237866 -100279171 + ID_B1 SINE B4 1 90 -134 6 960 1900 172 53 99 chr6 49237870 49238105 -100278932 - MTC LTR MaLR -8 413 211 6 960 1638 31 5 0 chr6 49238105 49238296 -100278741 - B2_Mm1t SINE B2 0 193 2 6 960 1900 172 53 99 chr6 49238296 49238493 -100278544 - MTC LTR MaLR -211 210 1 6 960 514 224 16 49 chr6 49238493 49238615 -100278422 + ID_B1 SINE B4 86 203 -21 6 960 238 61 0 0 chr6 49238860 49238893 -100278144 + B1_Mus2 SINE Alu 96 128 -19 6 960 583 50 0 0 chr6 49239001 49239081 -100277956 - B1_Mur4 SINE Alu 0 150 71 6 960 279 230 40 0 chr6 49239667 49239767 -100277270 + Kanga1 DNA Tc2 1621 1724 -21 6 960 215 250 31 52 chr6 49239797 49239894 -100277143 - MIRb SINE MIR -2 266 172 6 960 1614 163 74 7 chr6 49239909 49240218 -100276819 + ORR1B1 LTR MaLR 42 371 -23 6 960 872 267 24 0 chr6 49240241 49240451 -100276586 - B3 SINE B2 -1 215 1 6 960 302 157 782 8 chr6 49240497 49240618 -100276419 - B3 SINE B2 0 216 1 6 960 294 29 0 0 chr6 49240622 49240657 -100276380 + (ATTG)n Simple_repeat Simple_repeat 3 37 0 6 960 1224 54 0 0 chr6 49240838 49240985 -100276052 - B1_Mus2 SINE Alu 0 147 1 6 960 336 282 92 66 chr6 49241068 49241220 -100275817 - L1M2 LINE L1 -707 5593 5438 6 960 1286 107 5 11 chr6 49241221 49241410 -100275627 - B2_Mm2 SINE B2 -7 188 1 6 960 409 238 178 23 chr6 49241557 49241686 -100275351 - B1F2 SINE Alu 0 149 1 6 960 884 213 52 0 chr6 49241840 49242014 -100275023 - ETnERV2-int LTR ERVK -2319 5087 4905 6 960 1063 143 10 67 chr6 49242015 49242210 -100274827 + L1VL2 LINE L1 321 504 -5831 6 960 7310 103 17 14 chr6 49242216 49243760 -100273277 + L1_Mus3 LINE L1 5089 6637 -1 6 960 4613 182 48 3 chr6 49243760 49244575 -100272462 - ETnERV2-int LTR ERVK -2493 4913 4083 6 960 1110 91 7 0 chr6 49244575 49244718 -100272319 + B1_Mus2 SINE Alu 4 147 0 6 960 198 0 0 0 chr6 49244726 49244748 -100272289 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 960 1187 75 0 0 chr6 49244758 49244905 -100272132 + B1_Mm SINE Alu 1 147 0 6 960 4530 309 44 45 chr6 49244905 49248269 -100268768 - ETnERV2-int LTR ERVK -2885 3282 4 6 960 1852 124 73 6 chr6 49248271 49248588 -100268449 - RLTR9A LTR ERVK 0 368 31 6 960 853 83 13 46 chr6 49248577 49248728 -100268309 + B2_Mm2 SINE B2 50 195 0 6 960 646 153 9 0 chr6 49248798 49248909 -100268128 + ORR1B1 LTR MaLR 1 112 -282 6 960 685 175 14 42 chr6 49248905 49248991 -100268046 + ORR1B1 LTR MaLR 249 336 -58 6 960 2249 123 9 0 chr6 49248991 49249315 -100267722 - ORR1A2 LTR MaLR 0 327 1 6 960 685 175 14 42 chr6 49249315 49249371 -100267666 + ORR1B1 LTR MaLR 337 387 -7 6 960 1737 174 38 195 chr6 49249412 49249941 -100267096 + RLTR41 LTR ERV1 1 446 0 6 960 384 307 192 64 chr6 49249985 49250204 -100266833 - B4 SINE B4 -9 283 37 6 960 260 225 99 12 chr6 49250299 49250380 -100266657 - RMER6B LTR ERVK -6 455 368 6 960 1467 53 21 26 chr6 49250470 49250664 -100266373 + B2_Mm1a SINE B2 1 193 0 6 960 211 292 153 0 chr6 49251298 49251435 -100265602 + MIRc SINE MIR 76 233 -35 6 960 403 214 12 0 chr6 49251444 49251528 -100265509 - RLTR40 LTR ERVK -14 803 719 6 960 1547 166 20 7 chr6 49251522 49251814 -100265223 - MTD LTR MaLR -112 307 12 6 960 216 0 0 0 chr6 49251841 49251865 -100265172 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 960 301 125 21 0 chr6 49251877 49251925 -100265112 + PB1 SINE Alu 60 108 -19 6 960 2500 191 82 13 chr6 49251999 49252158 -100264879 - RLTR40 LTR ERVK -64 753 571 6 960 434 61 15 0 chr6 49252158 49252224 -100264813 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 960 2500 191 82 13 chr6 49252224 49252686 -100264351 - RLTR40 LTR ERVK -247 570 90 6 960 723 218 19 6 chr6 49252662 49252819 -100264218 + RLTR23 LTR ERV1 272 430 0 6 960 627 341 71 42 chr6 49253862 49254478 -100262559 + MMERGLN-int LTR ERV1 1253 1842 -5936 6 960 572 284 41 41 chr6 49254619 49254937 -100262100 + MMERGLN-int LTR ERV1 1812 2314 -5292 6 960 1646 158 37 10 chr6 49254992 49255287 -100261750 + RMER19B LTR ERVK 577 879 -23 6 960 1318 92 11 16 chr6 49255294 49255452 -100261585 + B2_Mm2 SINE B2 2 158 -37 6 960 192 77 0 0 chr6 49255452 49255478 -100261559 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 6 960 1318 92 11 16 chr6 49255478 49255507 -100261530 + B2_Mm2 SINE B2 159 188 -7 6 960 992 322 55 25 chr6 49255515 49256065 -100260972 + MMERGLN-int LTR ERV1 3346 3892 -3664 6 960 2261 95 12 80 chr6 49256310 49256712 -100260325 + RLTR1B LTR ERV1 138 512 0 6 960 238 217 33 16 chr6 49256867 49256928 -100260109 + MT2A LTR ERVL 1 62 -413 6 960 191 61 0 29 chr6 49256935 49256969 -100260068 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 6 960 1144 82 0 0 chr6 49256971 49257117 -100259920 - B1_Mm SINE Alu 0 147 2 6 960 1162 75 0 0 chr6 49257220 49257366 -100259671 - B1_Mus1 SINE Alu -2 146 1 6 960 2058 164 101 74 chr6 49257366 49258169 -100258868 - RMER19B LTR ERVK -17 885 3 6 960 606 137 0 27 chr6 49258232 49258345 -100258692 - B1_Mus2 SINE Alu -2 145 19 6 960 762 230 103 45 chr6 49258357 49258585 -100258452 + MT2A LTR ERVL 92 471 -130 6 960 1243 34 0 0 chr6 49258585 49258732 -100258305 - B1_Mus2 SINE Alu 0 147 1 6 960 542 291 46 133 chr6 49258732 49258821 -100258216 + MT2A LTR ERVL 472 547 -54 6 960 542 179 141 33 chr6 49258821 49258942 -100258095 + B1_Mur4 SINE Alu 5 138 -12 6 960 216 0 0 0 chr6 49258942 49258966 -100258071 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 6 960 542 291 46 133 chr6 49258966 49259031 -100258006 + MT2A LTR ERVL 548 600 -1 6 960 27 49 0 0 chr6 49259643 49259684 -100257353 + AT_rich Low_complexity Low_complexity 1 41 0 6 960 348 83 0 0 chr6 49259684 49259732 -100257305 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 960 519 242 98 0 chr6 49259734 49259866 -100257171 - B3A SINE B2 -41 157 13 6 960 411 21 0 0 chr6 49260112 49260160 -100256877 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 960 233 310 14 0 chr6 49260165 49260236 -100256801 - ID4_ SINE ID -10 73 2 6 960 1163 68 0 0 chr6 49260255 49260401 -100256636 + B1_Mm SINE Alu 2 147 0 6 960 320 306 167 62 chr6 49260755 49260947 -100256090 + ID_B1 SINE B4 3 214 -10 6 960 2520 120 51 128 chr6 49261136 49261746 -100255291 - RMER6A LTR ERVK -105 651 89 6 960 1137 120 104 40 chr6 49261791 49262166 -100254871 + LTRIS5 LTR ERV1 1 512 0 6 960 243 152 0 21 chr6 49262139 49262186 -100254851 + RLTR6_Mm LTR ERV1 559 604 -50 6 960 1117 125 57 6 chr6 49262926 49263103 -100253934 + RMER16-int LTR ERVK 141 326 -5080 6 960 1851 135 14 7 chr6 49263089 49263372 -100253665 + RMER16-int LTR ERVK 677 961 -4445 6 960 1374 139 176 62 chr6 49263359 49263492 -100253545 + RMER16-int LTR ERVK 1100 1272 -4134 6 960 1658 37 0 0 chr6 49263492 49263682 -100253355 - B2_Mm1a SINE B2 -1 192 3 6 960 1374 139 176 62 chr6 49263682 49263855 -100253182 + RMER16-int LTR ERVK 1273 1441 -3965 6 960 595 257 32 19 chr6 49263853 49264008 -100253029 + MuRRS4-int LTR ERV1 1557 1713 -6065 6 960 3776 93 65 24 chr6 49264030 49264625 -100252412 + MuRRS4-int LTR ERV1 1785 2494 -2569 6 960 2332 128 108 33 chr6 49264621 49265258 -100251779 + MuRRS4-int LTR ERV1 2028 3022 -2041 6 960 345 64 0 0 chr6 49265256 49265303 -100251734 + RLTR6-int LTR ERV1 5209 5255 -2523 6 960 1014 52 0 0 chr6 49265303 49265437 -100251600 + B1_Mus2 SINE Alu 14 147 0 6 960 381 43 0 0 chr6 49265448 49265495 -100251542 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 960 515 73 0 0 chr6 49265784 49265852 -100251185 + MuRRS4-int LTR ERV1 4802 4869 -194 6 960 324 0 0 0 chr6 49265899 49265935 -100251102 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 960 1262 122 95 44 chr6 49265935 49266290 -100250747 + LTRIS5 LTR ERV1 29 512 0 6 960 3577 20 0 0 chr6 49266310 49266706 -100250331 + MTA_Mm LTR MaLR 1 396 0 6 960 225 310 39 50 chr6 49267087 49267149 -100249888 - Charlie5 DNA MER1_type -91 2533 2471 6 960 2846 84 47 0 chr6 49267149 49267531 -100249506 + MTB LTR MaLR 1 400 0 6 960 225 310 39 50 chr6 49267531 49267648 -100249389 - Charlie5 DNA MER1_type -154 2470 2356 6 960 245 280 59 10 chr6 49267902 49268003 -100249034 - L1M5 LINE L1 -844 5302 5197 6 960 417 39 0 0 chr6 49268069 49268120 -100248917 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 960 308 216 0 12 chr6 49268132 49268301 -100248736 + (CAGAGA)n Simple_repeat Simple_repeat 2 168 0 6 960 733 222 113 5 chr6 49268303 49268489 -100248548 - B3 SINE B2 -9 207 2 6 960 332 241 12 12 chr6 49268511 49268591 -100248446 - ID4 SINE ID -3 80 1 6 960 347 247 78 110 chr6 49268591 49268725 -100248312 - L1M5 LINE L1 -1813 4333 4193 6 960 591 271 37 32 chr6 49268725 49268912 -100248125 - B3A SINE B2 -9 189 2 6 960 347 247 78 110 chr6 49268912 49268995 -100248042 - L1M5 LINE L1 -1954 4192 4123 6 960 21 0 0 0 chr6 49269432 49269453 -100247584 + GC_rich Low_complexity Low_complexity 1 21 0 6 960 816 92 6 212 chr6 49270293 49270472 -100246565 - B1_Mur4 SINE Alu -7 143 2 6 960 503 200 61 0 chr6 49271622 49271737 -100245300 - B1_Mur1 SINE Alu -21 128 7 6 960 204 239 0 21 chr6 49271759 49271792 -100245245 + polypyrimidine Low_complexity Low_complexity 127 159 0 6 960 1221 34 0 20 chr6 49271792 49271942 -100245095 - B1_Mm SINE Alu 0 147 1 6 960 204 239 0 21 chr6 49271942 49271955 -100245082 + polypyrimidine Low_complexity Low_complexity 114 126 0 6 960 1019 125 217 0 chr6 49273195 49273379 -100243658 + URR1A DNA MER1_type 1 224 -2 6 960 508 189 80 9 chr6 49273405 49273517 -100243520 - PB1D9 SINE Alu 0 120 1 6 960 632 281 98 104 chr6 49274378 49274473 -100242564 - RLTR16 LTR ERVK 0 505 419 6 960 261 0 0 0 chr6 49274473 49274502 -100242535 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 960 632 281 98 104 chr6 49274502 49274914 -100242123 - RLTR16 LTR ERVK -87 418 1 6 960 306 0 0 0 chr6 49274971 49275005 -100242032 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 960 512 243 93 22 chr6 49275015 49275154 -100241883 - B3A SINE B2 -48 150 2 6 960 480 35 0 0 chr6 49275167 49275225 -100241812 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 960 216 0 0 0 chr6 49275225 49275249 -100241788 + (GAA)n Simple_repeat Simple_repeat 3 26 0 6 960 301 42 0 41 chr6 49275249 49275298 -100241739 + (GGGGA)n Simple_repeat Simple_repeat 5 51 0 7 960 234 333 57 16 chr6 49275483 49275605 -100241432 + L2c LINE L2 3261 3387 0 7 960 2177 184 58 15 chr6 49275806 49276285 -100240752 - RLTR16 LTR ERVK -5 500 1 7 960 4405 118 47 68 chr6 49276529 49277282 -100239755 + RMER19A LTR ERVK 1 737 0 7 960 285 245 97 48 chr6 49277755 49277858 -100239179 + PB1D10 SINE Alu 1 108 -9 7 960 257 262 60 0 chr6 49277991 49278075 -100238962 - MER5B DNA MER1_type -61 117 29 7 960 259 194 31 31 chr6 49278506 49278570 -100238467 - RLTR31_Mur LTR ERVK 0 553 490 7 960 1022 257 71 56 chr6 49278618 49279083 -100237954 - RLTR17 LTR ERVK -96 596 125 7 960 1405 48 5 0 chr6 49279090 49279277 -100237760 - B2_Mm1t SINE B2 0 193 6 7 960 202 250 0 32 chr6 49279347 49279409 -100237628 + CT-rich Low_complexity Low_complexity 2 61 0 7 960 374 279 57 19 chr6 49279414 49279571 -100237466 - L1MA4 LINE L1 -363 5937 5775 7 960 6239 129 20 1 chr6 49279724 49280509 -100236528 + Lx5 LINE L1 4900 5696 -181 7 960 189 0 0 0 chr6 49280509 49280530 -100236507 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 7 960 6239 134 28 6 chr6 49280530 49280915 -100236122 + Lx5 LINE L1 5697 6098 -952 7 960 2017 146 61 17 chr6 49280926 49281287 -100235750 + Lx5 LINE L1 6671 7047 -3 7 960 201 132 0 0 chr6 49281992 49282030 -100235007 + (T)n Simple_repeat Simple_repeat 1 38 0 7 960 919 288 95 3 chr6 49282034 49282361 -100234676 + RCHARR1 DNA MER1_type 69 425 -549 7 960 251 241 62 94 chr6 49282609 49282705 -100234332 + B1_Mur1 SINE Alu 57 149 0 7 961 319 91 0 0 chr6 49283676 49283720 -100233317 + B1_Mus1 SINE Alu 3 46 -102 7 961 237 65 0 0 chr6 49283730 49283761 -100233276 + (A)n Simple_repeat Simple_repeat 1 31 0 7 961 23 78 0 0 chr6 49284482 49284533 -100232504 + AT_rich Low_complexity Low_complexity 1 51 0 7 961 456 77 0 0 chr6 49284548 49284613 -100232424 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 961 479 174 41 0 chr6 49284813 49284911 -100232126 - B1_Mur4 SINE Alu 0 150 49 7 961 302 205 44 88 chr6 49285006 49285068 -100231969 - ID SINE ID -135 89 33 7 961 2114 132 37 67 chr6 49285068 49285130 -100231907 - ORR1B1 LTR MaLR 0 394 355 7 961 1217 61 0 0 chr6 49285130 49285277 -100231760 - B1_Mus1 SINE Alu 0 148 2 7 961 2114 132 37 67 chr6 49285277 49285620 -100231417 - ORR1B1 LTR MaLR -40 354 1 7 961 302 205 44 88 chr6 49285620 49285648 -100231389 - ID SINE ID -192 32 3 7 961 634 301 63 0 chr6 49285667 49285873 -100231164 - ID_B1 SINE B4 -4 220 2 7 961 212 206 154 31 chr6 49285874 49285939 -100231098 - B1F2 SINE Alu -50 99 27 7 961 299 206 130 14 chr6 49286107 49286176 -100230861 - RMER15-int LTR ERVL -43 4956 4880 7 961 613 232 28 28 chr6 49286250 49286392 -100230645 + B4A SINE B4 90 231 -61 7 961 432 221 113 14 chr6 49287257 49287399 -100229638 - RSINE1 SINE B4 -7 158 3 7 961 341 241 57 127 chr6 49287762 49287832 -100229205 - RLTR20D LTR ERVK -20 514 442 7 961 1290 69 0 1 chr6 49287832 49288339 -100228698 + (CA)n Simple_repeat Simple_repeat 1 509 -182 7 961 1290 69 0 1 chr6 49288345 49288525 -100228512 + (CA)n Simple_repeat Simple_repeat 510 691 0 7 961 710 273 71 69 chr6 49288525 49288858 -100228179 - RLTR20D LTR ERVK -93 441 1 7 961 805 202 98 0 chr6 49289317 49289500 -100227537 + B3 SINE B2 10 210 -6 7 961 21 71 0 0 chr6 49290715 49290757 -100226280 + AT_rich Low_complexity Low_complexity 1 42 0 7 961 327 289 10 0 chr6 49290803 49290900 -100226137 + PB1D10 SINE Alu 12 109 -8 7 961 548 195 16 25 chr6 49291607 49291728 -100225309 - PB1D9 SINE Alu 0 120 1 7 961 290 300 12 0 chr6 49291787 49291867 -100225170 - ID4 SINE ID 0 83 3 7 961 22 0 0 0 chr6 49291931 49291953 -100225084 + AT_rich Low_complexity Low_complexity 1 22 0 7 961 398 220 64 9 chr6 49291966 49292076 -100224961 + ID_B1 SINE B4 1 116 -108 7 961 435 173 0 0 chr6 49292139 49292220 -100224817 + (TA)n Simple_repeat Simple_repeat 1 81 0 7 961 1690 104 59 4 chr6 49292445 49292715 -100224322 + MTC LTR MaLR 2 286 -135 7 961 968 119 0 0 chr6 49292719 49292870 -100224167 - MTB_Mm LTR MaLR -34 373 223 7 961 1371 229 70 28 chr6 49293416 49293771 -100223266 - ORR1D2 LTR MaLR 0 370 1 7 961 924 240 56 9 chr6 49293771 49294002 -100223035 + MTEa LTR MaLR 18 259 -120 7 961 202 73 0 47 chr6 49294721 49294764 -100222273 + (CTG)n Simple_repeat Simple_repeat 2 42 0 7 961 911 48 167 0 chr6 49295244 49295370 -100221667 + B1_Mm SINE Alu 1 147 0 7 961 1084 207 15 10 chr6 49295396 49295601 -100221436 + B3 SINE B2 3 208 -8 7 961 268 204 250 0 chr6 49295671 49295757 -100221280 - MTD LTR MaLR 0 421 314 7 961 320 195 130 0 chr6 49295757 49295835 -100221202 + B3A SINE B2 3 90 -126 7 961 1430 190 4 18 chr6 49295908 49296181 -100220856 - MTD LTR MaLR -94 325 57 7 961 1114 119 59 71 chr6 49296175 49296428 -100220609 + RMER4A LTR ERVK 217 466 0 7 961 507 297 160 44 chr6 49296436 49296848 -100220189 - MLT1D LTR MaLR 0 505 46 7 961 214 200 20 0 chr6 49296929 49296979 -100220058 + ID4_ SINE ID 6 56 -27 7 961 591 15 0 0 chr6 49296992 49297060 -100219977 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 7 961 1191 82 12 0 chr6 49297072 49297243 -100219794 - B2_Mm2 SINE B2 -22 173 1 7 961 1791 139 4 136 chr6 49297297 49297754 -100219283 - RMER10B LTR ERVL 0 398 2 7 961 216 273 0 18 chr6 49297760 49297816 -100219221 + CT-rich Low_complexity Low_complexity 2 56 0 7 961 453 250 194 22 chr6 49297849 49298029 -100219008 + ORR1D2 LTR MaLR 1 211 -159 7 961 264 54 0 26 chr6 49298268 49298306 -100218731 + ORR1D2 LTR MaLR 1 37 -333 7 961 383 282 52 52 chr6 49298403 49298485 -100218552 + B3A SINE B2 30 111 -87 7 961 1170 225 136 9 chr6 49298485 49298817 -100218220 + ORR1D1 LTR MaLR 1 374 0 7 961 383 282 52 52 chr6 49298817 49298850 -100218187 + B3A SINE B2 112 145 -53 7 961 395 155 36 0 chr6 49298852 49298936 -100218101 + ORR1A3 LTR MaLR 1 87 -239 7 961 335 24 0 0 chr6 49298922 49298963 -100218074 + ORR1A3 LTR MaLR 279 319 -8 7 961 221 231 0 0 chr6 49299174 49299213 -100217824 + C-rich Low_complexity Low_complexity 3 41 0 7 961 212 175 16 95 chr6 49299575 49299638 -100217399 + PB1D10 SINE Alu 28 85 -32 7 961 234 0 0 0 chr6 49299653 49299679 -100217358 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 961 360 286 145 48 chr6 49299798 49300088 -100216949 - MLT1E1 LTR MaLR -11 643 326 7 961 210 247 86 49 chr6 49300262 49300343 -100216694 - L2 LINE L2 -1378 2041 1958 7 961 405 0 0 0 chr6 49300370 49300415 -100216622 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 961 1686 26 0 0 chr6 49300532 49300725 -100216312 + B2_Mm1a SINE B2 1 193 0 7 961 1012 52 72 22 chr6 49300812 49300950 -100216087 - B1_Mus2 SINE Alu 0 147 3 7 961 23 0 0 0 chr6 49301504 49301527 -100215510 + AT_rich Low_complexity Low_complexity 1 23 0 7 961 195 42 0 0 chr6 49301630 49301654 -100215383 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 961 698 160 0 6 chr6 49301658 49301828 -100215209 + (TA)n Simple_repeat Simple_repeat 2 170 0 7 961 4326 153 200 17 chr6 49301844 49302489 -100214548 + RMER12 LTR ERVK 10 678 -644 7 961 1363 92 5 5 chr6 49302489 49302674 -100214363 - B2_Mm2 SINE B2 -10 185 1 7 961 4326 153 200 17 chr6 49302674 49302754 -100214283 + RMER12 LTR ERVK 679 765 -557 7 961 411 92 0 0 chr6 49302754 49302819 -100214218 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 961 4326 153 200 17 chr6 49302819 49303202 -100213835 + RMER12 LTR ERVK 766 1322 0 7 961 252 59 0 0 chr6 49303431 49303465 -100213572 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 961 526 289 44 47 chr6 49303530 49303828 -100213209 + MER33 DNA MER1_type 14 310 -14 7 961 2823 171 133 6 chr6 49304362 49304904 -100212133 - RMER19C LTR ERVK 0 611 1 7 961 823 249 5 61 chr6 49305259 49305419 -100211618 + B3 SINE B2 2 161 -55 7 961 3054 69 25 10 chr6 49305419 49305813 -100211224 - MTB LTR MaLR 0 400 1 7 961 823 249 5 61 chr6 49305813 49305866 -100211171 + B3 SINE B2 162 203 -13 7 961 5312 207 121 22 chr6 49305996 49307297 -100209740 - Lx7 LINE L1 -1 7695 6266 7 961 1552 63 0 0 chr6 49307958 49308148 -100208889 - B2_Mm1a SINE B2 -3 190 1 7 961 389 288 126 107 chr6 49308659 49308920 -100208117 - B4A SINE B4 0 292 27 7 961 646 248 14 7 chr6 49308949 49309095 -100207942 - B1_Mur1 SINE Alu 0 149 3 7 961 36 23 0 0 chr6 49309096 49309139 -100207898 + AT_rich Low_complexity Low_complexity 1 43 0 7 961 615 143 0 19 chr6 49309199 49309306 -100207731 - RMER1A Other Other -5 1025 921 7 961 587 282 0 7 chr6 49309314 49309457 -100207580 - B3A SINE B2 -45 153 12 7 961 254 95 24 0 chr6 49309489 49309531 -100207506 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 7 961 396 254 52 17 chr6 49309531 49309647 -100207390 - PB1D9 SINE Alu 0 120 1 7 961 572 286 114 8 chr6 49309647 49309845 -100207192 - B4 SINE B4 -73 219 5 7 961 1327 86 27 0 chr6 49309875 49310061 -100206976 - B2_Mm2 SINE B2 -3 192 2 7 961 44 20 0 0 chr6 49310751 49310802 -100206235 + AT_rich Low_complexity Low_complexity 1 51 0 7 961 279 0 0 0 chr6 49310830 49310861 -100206176 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 961 461 227 31 70 chr6 49310861 49310989 -100206048 - B1_Mur1 SINE Alu -24 125 3 7 961 293 0 27 0 chr6 49311609 49311646 -100205391 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 7 961 1914 157 85 6 chr6 49312370 49312710 -100204327 + ORR1B2 LTR MaLR 1 367 0 7 961 308 200 27 9 chr6 49312799 49312910 -100204127 + (TA)n Simple_repeat Simple_repeat 2 114 0 7 961 2381 98 54 11 chr6 49312929 49313281 -100203756 + RLTR9A LTR ERVK 1 367 -1 7 961 306 0 0 0 chr6 49313281 49313315 -100203722 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 961 1681 192 97 47 chr6 49313343 49313838 -100203199 - RMER19B LTR ERVK -174 728 1 7 961 910 266 142 44 chr6 49313841 49313885 -100203152 + Lx7 LINE L1 4665 4712 -1431 7 961 1210 41 7 0 chr6 49313885 49314031 -100203006 + B1_Mus1 SINE Alu 2 148 0 8 961 1112 266 142 44 chr6 49314031 49314178 -100202859 + Lx7 LINE L1 4713 4868 -1275 7 961 4055 31 8 2 chr6 49314178 49314657 -100202380 - LTRIS_Mm LTR ERV1 0 482 1 8 961 1119 289 100 35 chr6 49314657 49315499 -100201538 + Lx7 LINE L1 4846 5790 -96 7 961 634 269 90 20 chr6 49315505 49315821 -100201216 + Lx7 LINE L1 5628 5985 -1711 7 961 329 280 63 36 chr6 49316062 49316173 -100200864 + B1F2 SINE Alu 28 141 -8 8 961 249 302 28 9 chr6 49316213 49316320 -100200717 - Tigger1 DNA MER2_type -2272 146 38 8 961 689 296 63 20 chr6 49316924 49317176 -100199861 - B4A SINE B4 -24 268 6 8 961 273 270 16 126 chr6 49317065 49317192 -100199845 - B3A SINE B2 -80 118 6 8 961 262 325 25 37 chr6 49317633 49317796 -100199241 + (CGGGG)n Simple_repeat Simple_repeat 3 163 0 8 961 1031 199 196 107 chr6 49318676 49318992 -100198045 - MTD LTR MaLR 0 419 69 8 961 1391 65 16 16 chr6 49318992 49319180 -100197857 - B2_Mm2 SINE B2 -6 189 2 8 961 1031 199 196 107 chr6 49319180 49319246 -100197791 - MTD LTR MaLR -351 68 3 8 961 290 270 44 11 chr6 49319547 49319637 -100197400 + PB1D10 SINE Alu 18 110 -7 8 961 313 130 19 0 chr6 49319645 49319699 -100197338 + ID2 SINE ID 7 61 -22 8 961 195 42 0 0 chr6 49320475 49320499 -100196538 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 8 961 1255 24 48 12 chr6 49320499 49320657 -100196380 - L1Md_F2 LINE L1 -6 6576 6411 8 961 1603 42 10 5 chr6 49320678 49320701 -100196336 - B2_Mm1a SINE B2 0 193 169 8 961 180 0 0 0 chr6 49320701 49320721 -100196316 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8 961 1603 42 10 5 chr6 49320721 49320889 -100196148 - B2_Mm1a SINE B2 -25 168 1 8 961 244 270 162 48 chr6 49321313 49321418 -100195619 - PB1D10 SINE Alu 0 117 1 8 961 1409 239 8 48 chr6 49321519 49321893 -100195144 - ORR1E LTR MaLR 0 359 1 8 961 293 215 169 84 chr6 49322756 49322786 -100194251 - B2_Mm2 SINE B2 -1 194 166 8 961 354 23 0 0 chr6 49322786 49322829 -100194208 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 961 419 215 169 84 chr6 49322829 49322976 -100194061 - B3A SINE B2 -30 168 2 8 961 296 271 41 12 chr6 49323263 49323332 -100193705 + (TAGG)n Simple_repeat Simple_repeat 1 71 0 8 961 459 0 0 0 chr6 49323332 49323383 -100193654 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 8 961 296 271 41 12 chr6 49323383 49323485 -100193552 + (TAGG)n Simple_repeat Simple_repeat 4 109 0 8 961 414 285 72 7 chr6 49323640 49323778 -100193259 - B1F2 SINE Alu -1 148 2 8 961 389 211 13 0 chr6 49325223 49325299 -100191738 - RSINE1 SINE B4 -86 79 3 8 961 367 338 44 0 chr6 49325437 49325573 -100191464 - RSINE1 SINE B4 -22 143 2 8 961 515 252 19 0 chr6 49325579 49325686 -100191351 - PB1D10 SINE Alu -8 109 1 8 961 969 121 7 13 chr6 49326519 49326670 -100190367 - B1_Mur4 SINE Alu 0 150 1 8 961 832 216 107 10 chr6 49326703 49326899 -100190138 - B3 SINE B2 0 216 2 8 961 272 315 86 0 chr6 49326930 49327092 -100189945 + B2_Mm2 SINE B2 20 195 0 8 961 264 229 98 0 chr6 49327154 49327215 -100189822 - ID4_ SINE ID -14 69 3 8 961 1200 21 7 7 chr6 49327254 49327396 -100189641 - B1_Mm SINE Alu -5 142 1 8 961 261 0 0 0 chr6 49327413 49327442 -100189595 + (T)n Simple_repeat Simple_repeat 1 29 0 8 961 470 62 0 0 chr6 49327442 49327507 -100189530 - B1_Mm SINE Alu 0 147 83 8 961 25 0 0 0 chr6 49327520 49327545 -100189492 + AT_rich Low_complexity Low_complexity 1 25 0 8 961 395 172 278 22 chr6 49327860 49327993 -100189044 - B3 SINE B2 -45 171 5 8 961 335 302 0 8 chr6 49328007 49328124 -100188913 - PB1D10 SINE Alu -1 116 1 8 961 392 298 36 20 chr6 49329044 49329239 -100187798 - B3A SINE B2 0 198 1 8 961 223 231 21 52 chr6 49329275 49329371 -100187666 + T-rich Low_complexity Low_complexity 5 97 0 8 961 744 154 13 59 chr6 49329713 49329865 -100187172 - B1_Mur4 SINE Alu 0 150 6 8 961 471 35 0 0 chr6 49329872 49329929 -100187108 + (TCC)n Simple_repeat Simple_repeat 3 59 0 8 961 265 325 64 16 chr6 49329993 49330118 -100186919 - MIRb SINE MIR -6 262 132 8 961 1070 168 118 5 chr6 49330146 49330349 -100186688 + URR1A DNA MER1_type 1 226 0 8 961 1560 188 97 0 chr6 49331080 49331410 -100185627 - ORR1D1 LTR MaLR -10 364 3 8 961 499 206 184 0 chr6 49331868 49332009 -100185028 - MTC LTR MaLR -85 334 168 8 961 413 173 218 0 chr6 49332011 49332121 -100184916 + B1_Mus2 SINE Alu 14 147 0 8 961 573 258 43 38 chr6 49332143 49332328 -100184709 - MTC LTR MaLR -235 186 1 8 961 541 240 233 6 chr6 49332558 49332693 -100184344 + B3 SINE B2 2 152 -64 8 961 222 91 0 0 chr6 49332693 49332726 -100184311 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 961 541 240 233 6 chr6 49332726 49332762 -100184275 + B3 SINE B2 153 211 -5 8 961 376 294 141 44 chr6 49333129 49333335 -100183702 - RMER15 LTR ERVL -75 500 275 8 961 186 43 0 0 chr6 49333396 49333419 -100183618 + (CCA)n Simple_repeat Simple_repeat 2 24 0 8 961 399 297 10 0 chr6 49333554 49333655 -100183382 + B4A SINE B4 159 260 -32 8 961 1122 64 0 0 chr6 49333656 49333812 -100183225 + (TC)n Simple_repeat Simple_repeat 2 157 0 8 961 235 125 0 0 chr6 49334074 49334114 -100182923 - B4 SINE B4 0 292 253 8 961 375 23 0 0 chr6 49334118 49334162 -100182875 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 961 245 179 71 0 chr6 49334184 49334240 -100182797 - RSINE1 SINE B4 0 165 106 8 961 189 0 0 0 chr6 49334278 49334299 -100182738 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 961 261 0 0 0 chr6 49334320 49334349 -100182688 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 961 321 26 0 0 chr6 49334408 49334446 -100182591 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 961 213 39 0 0 chr6 49334466 49334492 -100182545 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 961 303 28 0 0 chr6 49334720 49334756 -100182281 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 961 216 0 0 0 chr6 49334776 49334800 -100182237 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 961 537 241 17 0 chr6 49334831 49334947 -100182090 - RSINE1 SINE B4 -36 129 12 8 961 383 281 43 29 chr6 49334965 49335104 -100181933 - B1F SINE Alu -7 142 2 8 961 212 291 157 63 chr6 49335126 49335317 -100181720 - L4 LINE RTE -1175 854 646 8 961 23 0 0 0 chr6 49335678 49335701 -100181336 + AT_rich Low_complexity Low_complexity 1 23 0 8 961 271 200 0 0 chr6 49336089 49336139 -100180898 + L1MA6 LINE L1 6162 6211 -89 8 961 325 262 9 80 chr6 49336514 49336626 -100180411 - Charlie5 DNA MER1_type -2520 104 1 8 961 566 289 142 5 chr6 49336688 49336900 -100180137 - MLT1A0 LTR MaLR -11 354 114 8 961 234 62 0 0 chr6 49336928 49336960 -100180077 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8 961 2004 146 95 168 chr6 49337000 49337570 -100179467 - RLTR12B LTR ERVK 0 528 1 8 961 283 312 62 27 chr6 49337993 49338105 -100178932 - PB1D10 SINE Alu -1 116 1 8 961 213 370 18 44 chr6 49338105 49338144 -100178893 - ID SINE ID -142 82 47 8 961 357 284 11 11 chr6 49338319 49338407 -100178630 - ID_B1 SINE B4 -53 171 84 8 961 694 242 144 21 chr6 49338407 49338601 -100178436 - ORR1D2 LTR MaLR 0 370 153 8 961 24 53 0 0 chr6 49338774 49338812 -100178225 + AT_rich Low_complexity Low_complexity 1 38 0 8 961 23 54 0 0 chr6 49339198 49339235 -100177802 + AT_rich Low_complexity Low_complexity 1 37 0 8 961 270 242 0 0 chr6 49339312 49339374 -100177663 - RMER1C Other Other -1198 144 83 8 961 621 233 94 90 chr6 49339658 49339870 -100177167 + RMER1C Other Other 72 284 -1058 8 961 1672 196 29 70 chr6 49340135 49340622 -100176415 + RMER1C Other Other 786 1252 -90 8 961 3149 140 222 98 chr6 49340637 49341429 -100175608 - RMER19B LTR ERVK -12 890 1 8 961 329 209 42 52 chr6 49341429 49341525 -100175512 + RMER1C Other Other 1248 1342 0 8 961 358 252 90 32 chr6 49342062 49342218 -100174819 + L1ME2 LINE L1 4338 4502 -1644 8 961 272 312 43 0 chr6 49342218 49342311 -100174726 - RMER12 LTR ERVK -477 845 749 8 961 418 286 86 25 chr6 49342447 49342727 -100174310 + L1MC LINE L1 4694 4990 -1156 8 961 278 106 0 21 chr6 49342753 49342801 -100174236 + (TA)n Simple_repeat Simple_repeat 1 47 0 8 961 249 33 0 0 chr6 49343131 49343161 -100173876 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 961 423 0 0 0 chr6 49343306 49343353 -100173684 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 961 837 224 5 5 chr6 49343381 49343565 -100173472 + Lx5 LINE L1 6225 6408 -642 8 961 231 228 102 65 chr6 49343588 49343696 -100173341 - YREP_Mm Unknown Unknown -1478 334 223 8 961 591 250 14 29 chr6 49343600 49343740 -100173297 + ID_B1 SINE B4 80 217 -7 8 961 768 217 7 20 chr6 49343740 49343886 -100173151 + B1_Mur1 SINE Alu 6 149 0 8 961 348 315 91 101 chr6 49343887 49343975 -100173062 + L1ME2 LINE L1 5308 5384 -795 8 961 216 0 0 0 chr6 49343975 49343999 -100173038 + (CAA)n Simple_repeat Simple_repeat 3 26 0 8 961 348 315 91 101 chr6 49343999 49344169 -100172868 + L1ME2 LINE L1 5385 5530 -649 8 961 948 189 63 19 chr6 49344169 49344374 -100172663 - B3 SINE B2 0 216 3 8 961 369 317 98 89 chr6 49344374 49344953 -100172084 + L1ME2 LINE L1 5515 6157 -7 8 961 680 137 82 22 chr6 49346165 49346299 -100170738 + B1_Mus1 SINE Alu 3 144 -4 8 961 2072 54 0 0 chr6 49346396 49346656 -100170381 - L1Md_A LINE L1 -2 6580 6321 8 961 32 0 0 0 chr6 49347335 49347367 -100169670 + AT_rich Low_complexity Low_complexity 1 32 0 8 961 316 55 36 0 chr6 49347389 49347444 -100169593 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 8 961 383 219 49 0 chr6 49347449 49347531 -100169506 + B3 SINE B2 1 86 -130 8 961 382 283 37 35 chr6 49347572 49347704 -100169333 + B3 SINE B2 60 187 -29 8 961 398 20 20 0 chr6 49347705 49347756 -100169281 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 961 287 296 145 24 chr6 49349223 49349389 -100167648 - Lx7 LINE L1 -383 7313 7128 8 961 512 185 111 0 chr6 49349749 49349857 -100167180 + PB1D9 SINE Alu 1 120 0 8 961 1113 208 0 9 chr6 49350155 49350369 -100166668 - B3 SINE B2 0 216 5 8 961 539 208 38 19 chr6 49350541 49350698 -100166339 - MER33 DNA MER1_type -1 323 164 8 961 347 247 22 22 chr6 49350707 49350798 -100166239 + PB1D10 SINE Alu 21 111 -6 8 961 398 177 114 0 chr6 49350929 49351008 -100166029 - B1_Mur4 SINE Alu -7 143 56 8 961 196 333 74 62 chr6 49351397 49351646 -100165391 - MIRb SINE MIR -2 260 2 8 961 21 0 0 0 chr6 49351675 49351696 -100165341 + AT_rich Low_complexity Low_complexity 1 21 0 8 961 276 329 29 91 chr6 49352336 49352576 -100164461 - L2c LINE L2 -219 3156 2936 8 961 273 282 0 25 chr6 49352759 49352839 -100164198 + CT-rich Low_complexity Low_complexity 1 78 0 9 961 322 292 4 34 chr6 49352853 49352876 -100164161 - ID4_ SINE ID -53 99 1 9 961 348 270 0 26 chr6 49352876 49352952 -100164085 - ID SINE ID -150 74 1 9 961 357 228 42 34 chr6 49353107 49353225 -100163812 - PB1D7 SINE Alu -1 119 1 9 961 694 260 185 30 chr6 49353229 49353700 -100163337 - L1MC4a LINE L1 -3 7879 7336 9 961 996 158 16 43 chr6 49353720 49353743 -100163294 - B2_Mm1t SINE B2 -13 180 160 9 961 180 0 0 0 chr6 49353743 49353763 -100163274 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 9 961 1148 104 1 3 chr6 49353763 49353924 -100163113 - B2_Mm2 SINE B2 -34 159 1 9 961 243 236 171 82 chr6 49354064 49354309 -100162728 - L1MC4a LINE L1 -891 7151 6850 9 961 1121 69 21 0 chr6 49354454 49354598 -100162439 + B1_Mus2 SINE Alu 1 147 0 9 961 237 22 21 62 chr6 49354598 49354646 -100162391 + (CAAAAA)n Simple_repeat Simple_repeat 6 51 0 9 961 25 31 0 0 chr6 49354987 49355019 -100162018 + AT_rich Low_complexity Low_complexity 1 32 0 9 961 349 264 16 16 chr6 49355285 49355325 -100161712 + polypurine Low_complexity Low_complexity 2 39 0 9 961 1716 134 167 81 chr6 49355325 49355732 -100161305 - RMER10A LTR ERVL 0 442 1 9 961 349 264 16 16 chr6 49355732 49355818 -100161219 + GA-rich Low_complexity Low_complexity 40 127 0 9 961 216 97 0 0 chr6 49355895 49355926 -100161111 + (T)n Simple_repeat Simple_repeat 1 31 0 9 961 29 0 0 0 chr6 49355987 49356016 -100161021 + AT_rich Low_complexity Low_complexity 1 29 0 9 961 1540 43 0 25 chr6 49356073 49356481 -100160556 + (TTC)n Simple_repeat Simple_repeat 1 398 0 9 961 269 296 346 1 chr6 49356501 49356679 -100160358 + MIR SINE MIR 3 231 -31 9 961 180 111 0 0 chr6 49356923 49356950 -100160087 + (TATATG)n Simple_repeat Simple_repeat 6 32 0 9 961 186 143 0 0 chr6 49356956 49356991 -100160046 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 961 350 320 0 30 chr6 49357014 49357114 -100159923 - RSINE1 SINE B4 -55 110 14 9 961 4055 29 4 8 chr6 49357593 49358081 -100158956 - L1Md_F2 LINE L1 -2 6580 6095 9 961 310 259 32 57 chr6 49358100 49358223 -100158814 + RMER12 LTR ERVK 729 848 -474 9 961 314 274 54 18 chr6 49358263 49358430 -100158607 + (TATATG)n Simple_repeat Simple_repeat 5 177 0 9 961 788 220 85 11 chr6 49358436 49358624 -100158413 - B3 SINE B2 -14 202 1 9 961 44 70 0 0 chr6 49359280 49359366 -100157671 + AT_rich Low_complexity Low_complexity 1 86 0 9 961 228 259 121 0 chr6 49359387 49359445 -100157592 + ID4 SINE ID 9 73 -10 9 961 2411 137 131 15 chr6 49359484 49359950 -100157087 - RLTR28 LTR ERVL -4 520 1 9 961 745 293 69 96 chr6 49360307 49360556 -100156481 + MTD LTR MaLR 10 265 -154 9 961 1262 34 0 0 chr6 49360556 49360702 -100156335 - B1_Mm SINE Alu -1 146 1 9 961 745 293 69 96 chr6 49360702 49360815 -100156222 + MTD LTR MaLR 266 362 -57 9 961 2452 134 57 155 chr6 49360822 49361423 -100155614 - RMER15 LTR ERVL 0 575 34 9 961 631 217 133 6 chr6 49361423 49361581 -100155456 - RMER15-int LTR ERVL -12 4987 4810 9 961 336 197 14 14 chr6 49361658 49361730 -100155307 - Lx8 LINE L1 -1194 6279 6208 9 961 2897 224 88 13 chr6 49361802 49362961 -100154076 - RMER15-int LTR ERVL -2610 2389 1144 9 961 2114 109 58 47 chr6 49362966 49363331 -100153706 - RLTR9A2 LTR ERVK -14 369 1 9 961 6749 155 55 44 chr6 49363548 49363939 -100153098 - ETnERV2-int LTR ERVK -3482 3924 3545 9 961 180 0 0 0 chr6 49363939 49363959 -100153078 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 961 6749 165 60 61 chr6 49363959 49365487 -100151550 - ETnERV2-int LTR ERVK -3862 3544 1011 9 961 539 309 93 0 chr6 49365798 49365937 -100151100 - RSINE1 SINE B4 0 165 14 9 961 870 130 7 46 chr6 49366100 49366253 -100150784 + B1_Mus2 SINE Alu 1 147 0 9 961 4270 52 2 93 chr6 49366415 49367035 -100150002 + LTRIS2 LTR ERV1 2 564 0 9 961 284 323 0 0 chr6 49367851 49367913 -100149124 + ID4_ SINE ID 22 83 0 9 961 948 211 19 24 chr6 49368387 49368596 -100148441 - B3 SINE B2 -7 209 2 9 961 293 331 40 47 chr6 49368853 49369002 -100148035 - B1F SINE Alu -1 148 1 9 961 4340 133 42 22 chr6 49369379 49370116 -100146921 - RMER6A LTR ERVK -4 752 1 9 961 1238 204 51 15 chr6 49370326 49370599 -100146438 - B4A SINE B4 -8 284 2 9 961 972 150 0 0 chr6 49370750 49370897 -100146140 + B1_Mus1 SINE Alu 2 148 0 9 961 497 226 0 0 chr6 49370919 49371012 -100146025 + B1_Mur1 SINE Alu 28 120 -29 9 961 648 231 23 15 chr6 49371062 49371194 -100145843 + B1_Mur1 SINE Alu 1 133 -16 9 961 240 111 0 0 chr6 49371224 49371260 -100145777 + (TCC)n Simple_repeat Simple_repeat 3 38 0 9 961 238 291 0 0 chr6 49371509 49371564 -100145473 - MER21B LTR ERV1 -113 750 696 9 961 355 249 0 0 chr6 49371818 49371894 -100145143 - ID4_ SINE ID -65 87 12 9 961 707 293 22 15 chr6 49371930 49372156 -100144881 - B4 SINE B4 -4 288 83 9 961 232 303 47 66 chr6 49372334 49372440 -100144597 + PB1 SINE Alu 2 105 -22 9 961 748 231 35 7 chr6 49372452 49372596 -100144441 - B1_Mur1 SINE Alu -1 148 1 9 961 1056 204 35 0 chr6 49372662 49372863 -100144174 - B3 SINE B2 -7 209 2 9 961 2142 126 12 52 chr6 49372912 49373255 -100143782 - ORR1A4 LTR MaLR 0 329 1 9 961 1197 29 0 0 chr6 49373557 49373694 -100143343 + B1_Mus2 SINE Alu 1 137 -10 9 961 228 158 0 0 chr6 49374380 49374437 -100142600 + (CAT)n Simple_repeat Simple_repeat 3 59 0 9 961 470 317 112 24 chr6 49375161 49375419 -100141618 - LTR87 LTR ERVL? -86 538 224 9 961 22 0 0 0 chr6 49375835 49375857 -100141180 + AT_rich Low_complexity Low_complexity 1 22 0 9 961 15855 136 57 28 chr6 49375857 49379474 -100137563 - Lx4B LINE L1 -21 6633 2884 9 961 611 151 0 0 chr6 49379488 49379607 -100137430 - Lx4B LINE L1 -4274 1612 1494 9 961 1856 262 79 32 chr6 49379601 49380957 -100136080 - Lx7 LINE L1 -907 6789 5340 9 961 1012 93 65 0 chr6 49380957 49381096 -100135941 + B1_Mus1 SINE Alu 1 148 0 9 961 234 0 0 0 chr6 49381096 49381122 -100135915 + (A)n Simple_repeat Simple_repeat 1 26 0 9 961 24539 117 20 22 chr6 49381132 49385542 -100131495 + L1VL4 LINE L1 245 4682 -1201 9 961 1131 71 0 0 chr6 49385542 49385683 -100131354 + B1_Mus1 SINE Alu 2 142 -6 9 961 221 0 0 33 chr6 49385686 49385716 -100131321 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 961 24539 101 12 7 chr6 49385716 49386162 -100130875 + L1VL4 LINE L1 4683 5117 -766 9 961 5372 155 70 2 chr6 49386160 49387260 -100129777 - L1_Mur3 LINE L1 -1496 4384 3210 9 961 745 284 6 0 chr6 49389381 49389543 -100127494 - RSINE1 SINE B4 0 165 3 9 961 921 267 64 60 chr6 49389644 49389927 -100127110 - B4 SINE B4 0 292 9 9 961 1740 21 0 21 chr6 49391950 49392143 -100124894 + B2_Mm1a SINE B2 1 189 -4 9 961 463 304 56 20 chr6 49392646 49392728 -100124309 - MER2 DNA MER2_type -26 319 230 9 961 324 315 17 59 chr6 49392728 49392846 -100124191 - PB1D10 SINE Alu 0 117 5 9 961 463 314 77 24 chr6 49392846 49393046 -100123991 - MER2 DNA MER2_type -116 229 8 9 961 849 234 164 5 chr6 49393099 49393288 -100123749 + ID_B1 SINE B4 2 220 -4 9 961 437 300 56 14 chr6 49393489 49393631 -100123406 + B1F SINE Alu 1 148 -1 9 961 724 256 163 6 chr6 49393856 49394175 -100122862 + Lx9 LINE L1 7273 7641 -3 9 961 4572 20 12 0 chr6 49394380 49394867 -100122170 - MT2_Mm LTR ERVL 0 493 1 9 961 1166 214 14 0 chr6 49395621 49395831 -100121206 - B3 SINE B2 -3 213 1 9 961 21 95 0 0 chr6 49395979 49396042 -100120995 + AT_rich Low_complexity Low_complexity 1 63 0 9 961 995 42 8 0 chr6 49396504 49396624 -100120413 + L1Md_F2 LINE L1 5412 5532 -351 9 961 943 73 0 0 chr6 49396619 49396742 -100120295 + L1Md_F2 LINE L1 5844 5966 -616 9 961 1178 293 100 6 chr6 49396745 49397075 -100119962 - ORR1D2 LTR MaLR -8 362 2 9 961 1702 27 27 0 chr6 49397536 49397724 -100119313 + B2_Mm1t SINE B2 1 193 0 9 961 877 276 83 24 chr6 49398228 49398648 -100118389 - L1MB7 LINE L1 -2 6182 5738 9 961 474 264 54 0 chr6 49398653 49398782 -100118255 - B1F SINE Alu 0 149 14 9 961 234 321 60 87 chr6 49398656 49398806 -100118231 - B4 SINE B4 -69 223 78 9 961 252 227 67 0 chr6 49398808 49398883 -100118154 - L1MD LINE L1 -630 5729 5650 9 961 1639 124 134 0 chr6 49399050 49399333 -100117704 + ORR1A4 LTR MaLR 1 321 -8 9 961 754 199 262 6 chr6 49399345 49399517 -100117520 - B3 SINE B2 0 216 1 9 961 31219 90 28 35 chr6 49400184 49401815 -100115222 + L1Md_F2 LINE L1 363 1971 -3912 9 961 1225 68 0 0 chr6 49401815 49401962 -100115075 + B1_Mus2 SINE Alu 1 147 0 9 961 31219 85 16 5 chr6 49401962 49405528 -100111509 + L1Md_F2 LINE L1 1972 5586 -297 9 961 7631 80 11 6 chr6 49405529 49406514 -100110523 + L1Md_F2 LINE L1 5588 6577 -5 9 961 560 272 16 111 chr6 49407062 49407252 -100109785 + B4 SINE B4 1 172 -120 9 961 395 52 17 0 chr6 49407902 49407960 -100109077 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 961 1829 167 71 38 chr6 49407960 49408327 -100108710 - RMER6-int LTR ERVK -2798 379 1 9 961 448 123 0 14 chr6 49408327 49408397 -100108640 - RMER6-int LTR ERVK -3084 93 25 9 961 1100 117 45 109 chr6 49408470 49408720 -100108317 - RMER6A LTR ERVK -67 689 409 9 961 344 307 25 16 chr6 49408732 49408940 -100108097 - L1M2 LINE L1 -1710 4430 4211 9 961 860 293 84 27 chr6 49409026 49409289 -100107748 - B4A SINE B4 -14 278 1 9 961 180 0 0 0 chr6 49409372 49409392 -100107645 + (TC)n Simple_repeat Simple_repeat 1 20 0 9 961 468 91 0 0 chr6 49409392 49409457 -100107580 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 961 684 159 0 9 chr6 49409460 49409574 -100107463 - Lx9 LINE L1 -162 7482 7370 9 961 465 247 10 0 chr6 49409576 49409673 -100107364 + Lx9 LINE L1 7268 7365 -279 9 961 267 189 0 0 chr6 49409690 49409743 -100107294 + T-rich Low_complexity Low_complexity 1 53 0 9 961 15680 96 29 21 chr6 49410151 49413308 -100103729 + L1VL1 LINE L1 223 3406 -292 9 961 2058 86 34 76 chr6 49413306 49413660 -100103377 + L1_Mm LINE L1 4145 4483 -1400 9 120 1115 261 4 13 chr6 49413921 49414158 -100102879 + B4 SINE B4 7 241 -51 9 962 1767 206 60 11 chr6 49414154 49414502 -100102535 + ORR1D1 LTR MaLR 5 369 -5 9 962 1491 186 92 0 chr6 49414736 49415031 -100102006 - MTD LTR MaLR -8 411 90 1 962 741 133 44 7 chr6 49415266 49415402 -100101635 - URR1A DNA MER1_type -8 218 78 1 962 1101 265 68 49 chr6 49416004 49416369 -100100668 - MTE-int LTR MaLR -1110 470 99 1 962 349 179 45 0 chr6 49416418 49416485 -100100552 - MTEa LTR MaLR -2 377 308 1 962 1071 253 164 16 chr6 49416642 49417247 -100099790 - L1MB8 LINE L1 -33 6150 5436 1 962 1266 282 56 18 chr6 49417263 49417761 -100099276 - L1MB8 LINE L1 -777 5369 4853 1 962 497 295 54 0 chr6 49417896 49418045 -100098992 - Tigger5 DNA MER2_type -2169 237 81 1 962 245 239 116 32 chr6 49418048 49418143 -100098894 - L1MB8 LINE L1 -1349 4797 4695 1 962 1241 115 27 16 chr6 49418357 49418543 -100098494 - B2_Mm2 SINE B2 -7 188 1 1 962 367 261 68 17 chr6 49418592 49418709 -100098328 - L1MB8 LINE L1 -1927 4219 4097 1 962 222 272 9 46 chr6 49418935 49419043 -100097994 + T-rich Low_complexity Low_complexity 3 106 0 1 962 260 125 0 0 chr6 49419056 49419096 -100097941 - B1_Mur4 SINE Alu -2 148 109 1 962 190 410 0 13 chr6 49419669 49419748 -100097289 - L2c LINE L2 -27 3360 3283 1 962 463 317 15 82 chr6 49419778 49419974 -100097063 - Lx8 LINE L1 -383 7090 6908 1 962 463 241 186 12 chr6 49419982 49420277 -100096760 - Lx8 LINE L1 -1685 5959 5603 1 962 180 111 0 0 chr6 49420396 49420423 -100096614 + (TTC)n Simple_repeat Simple_repeat 2 28 0 1 962 203 0 37 0 chr6 49420430 49420457 -100096580 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 1 962 1909 43 0 29 chr6 49420474 49420712 -100096325 - L1_Mus1 LINE L1 0 6567 6337 1 962 517 149 0 11 chr6 49420713 49420801 -100096236 + L1Md_F LINE L1 320 406 -6113 1 962 776 156 35 0 chr6 49421670 49421811 -100095226 - MurERV4_19-int LTR ERVK -5395 385 240 1 962 324 75 0 0 chr6 49421826 49421866 -100095171 + MurERV4_19-int LTR ERVK 588 627 -5153 1 962 255 125 0 0 chr6 49422235 49422275 -100094762 + (TCTCCC)n Simple_repeat Simple_repeat 4 43 0 1 962 346 326 82 14 chr6 49424339 49424485 -100092552 - HAL1-3A_ME LINE L1 -419 2439 2284 1 962 242 116 0 23 chr6 49424485 49424529 -100092508 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 1 962 318 220 0 0 chr6 49425951 49426051 -100090986 + CT-rich Low_complexity Low_complexity 3 102 0 1 962 309 207 0 0 chr6 49427222 49427309 -100089728 + CT-rich Low_complexity Low_complexity 2 88 0 1 962 267 152 0 0 chr6 49427405 49427451 -100089586 + T-rich Low_complexity Low_complexity 1 46 0 1 962 522 197 0 0 chr6 49429108 49429260 -100087777 + CT-rich Low_complexity Low_complexity 2 153 0 1 962 180 0 0 0 chr6 49430019 49430039 -100086998 + (T)n Simple_repeat Simple_repeat 1 20 0 1 962 200 203 0 26 chr6 49431051 49431127 -100085910 + CT-rich Low_complexity Low_complexity 3 76 0 1 962 258 32 0 0 chr6 49431507 49431538 -100085499 + (T)n Simple_repeat Simple_repeat 1 31 0 1 962 252 143 0 0 chr6 49434193 49434235 -100082802 + (T)n Simple_repeat Simple_repeat 1 42 0 1 962 3215 81 5 17 chr6 49434639 49435053 -100081984 + RLTR9E LTR ERVK 1 409 0 1 962 6552 206 40 16 chr6 49435056 49436671 -100080366 + ETnERV-int LTR ERVK 4 1656 -1658 1 962 189 0 0 0 chr6 49437188 49437209 -100079828 + (T)n Simple_repeat Simple_repeat 1 21 0 1 962 596 144 67 0 chr6 49438376 49438480 -100078557 + B1_Mur3 SINE Alu 9 119 -30 1 962 208 125 0 48 chr6 49440403 49440419 -100076618 + T-rich Low_complexity Low_complexity 26 40 0 1 962 1089 66 51 7 chr6 49440419 49440557 -100076480 - B1_Mus1 SINE Alu -4 144 1 1 962 208 125 0 48 chr6 49440557 49440582 -100076455 + T-rich Low_complexity Low_complexity 1 25 0 1 962 1148 78 26 0 chr6 49440598 49440752 -100076285 + RLTR1B LTR ERV1 355 512 0 1 962 11463 120 38 81 chr6 49440752 49440933 -100076104 + RLTR1B-int LTR ERV1 1 187 -3112 1 962 3117 35 3 0 chr6 49440933 49441278 -100075759 + ORR1A0 LTR MaLR 1 346 0 1 962 11463 120 38 81 chr6 49441278 49443299 -100073738 + RLTR1B-int LTR ERV1 188 2109 -1190 1 962 4715 59 64 6 chr6 49443296 49443925 -100073112 + RLTR1B-int LTR ERV1 2635 3299 0 1 962 1502 53 33 23 chr6 49443925 49444274 -100072763 + RLTR1B LTR ERV1 1 434 -78 1 962 2239 157 37 33 chr6 49444274 49444288 -100072749 - RMER6B LTR ERVK -3 458 445 1 962 324 0 0 0 chr6 49444288 49444324 -100072713 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 962 2239 157 37 33 chr6 49444324 49444763 -100072274 - RMER6B LTR ERVK -17 444 4 1 962 4357 17 0 2 chr6 49444990 49445473 -100071564 + LTRIS_Mm LTR ERV1 1 482 0 1 962 36686 44 34 23 chr6 49445473 49450112 -100066925 + MuRRS-int LTR ERV1 1 4690 0 1 962 4241 19 2 12 chr6 49450112 49450599 -100066438 + LTRIS_Mm LTR ERV1 1 482 0 1 962 233 300 174 9 chr6 49451649 49451861 -100065176 - L1M3 LINE L1 -360 5811 5565 1 962 583 311 43 72 chr6 49451928 49452274 -100064763 + Lx8 LINE L1 6687 7022 -451 1 962 1208 61 0 0 chr6 49453074 49453221 -100063816 + B1_Mm SINE Alu 1 147 0 1 962 738 145 0 0 chr6 49453222 49453346 -100063691 + (GAAAA)n Simple_repeat Simple_repeat 2 125 0 1 962 374 313 88 24 chr6 49453358 49453528 -100063509 + Lx8 LINE L1 6632 6812 -661 1 962 394 178 57 34 chr6 49453530 49453705 -100063332 + (CTATA)n Simple_repeat Simple_repeat 2 180 0 1 962 599 270 78 49 chr6 49453747 49454031 -100063006 + Lx8 LINE L1 7182 7473 0 1 962 883 297 60 32 chr6 49456048 49456417 -100060620 - MTE2b LTR MaLR 0 379 1 1 962 428 60 0 0 chr6 49457492 49457559 -100059478 + Lx4A LINE L1 6989 7055 -3 1 962 295 240 53 0 chr6 49458509 49458584 -100058453 - ID SINE ID -141 83 5 1 962 25 51 0 0 chr6 49458590 49458629 -100058408 + AT_rich Low_complexity Low_complexity 1 39 0 1 962 548 286 155 22 chr6 49458690 49458922 -100058115 - B4A SINE B4 -19 273 11 1 962 681 270 118 0 chr6 49458956 49459219 -100057818 - L1M2 LINE L1 -643 6359 6066 1 962 1269 23 26 10 chr6 49459219 49459527 -100057510 + (TC)n Simple_repeat Simple_repeat 1 313 0 1 962 933 231 16 127 chr6 49459594 49459849 -100057188 - B4A SINE B4 -6 286 55 1 962 243 0 0 0 chr6 49459849 49459876 -100057161 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 962 1173 42 7 0 chr6 49459876 49460018 -100057019 - B1_Mm SINE Alu -3 144 2 1 962 933 231 16 127 chr6 49460018 49460057 -100056980 - B4A SINE B4 -238 54 26 1 962 1644 226 25 8 chr6 49460057 49460418 -100056619 + ORR1D2 LTR MaLR 4 370 0 1 962 933 231 16 127 chr6 49460418 49460443 -100056594 - B4A SINE B4 -267 25 2 1 962 763 250 123 65 chr6 49460443 49460922 -100056115 - L1M2 LINE L1 -776 6069 5563 1 962 428 318 0 32 chr6 49461038 49461194 -100055843 + RSINE1 SINE B4 13 163 -2 1 962 22 0 0 0 chr6 49461221 49461243 -100055794 + AT_rich Low_complexity Low_complexity 1 22 0 1 962 24 0 0 0 chr6 49461294 49461318 -100055719 + AT_rich Low_complexity Low_complexity 1 24 0 1 962 361 325 43 30 chr6 49461328 49461560 -100055477 - L1M2 LINE L1 -3724 3118 2884 1 962 344 335 56 58 chr6 49461579 49461935 -100055102 - L1M2 LINE L1 -4006 2843 2484 1 962 924 181 0 0 chr6 49461935 49462084 -100054953 + B1_Mur4 SINE Alu 2 150 0 1 962 415 319 39 20 chr6 49462084 49462452 -100054585 - L1M2 LINE L1 -3987 2562 2131 1 962 612 287 0 0 chr6 49462473 49462609 -100054428 - B1_Mur1 SINE Alu -13 136 1 1 962 1027 299 112 33 chr6 49462819 49463575 -100053462 + L1MA4 LINE L1 5055 5911 -389 1 962 1055 257 140 7 chr6 49463722 49464266 -100052771 + L1M2 LINE L1 4847 5457 -855 1 962 272 288 61 26 chr6 49464328 49464442 -100052595 + L1M2 LINE L1 5422 5539 -758 1 962 2267 307 105 40 chr6 49464512 49464795 -100052242 - L1_Rod LINE L1 -2434 3413 3122 1 962 348 83 0 0 chr6 49464795 49464843 -100052194 + (CTTA)n Simple_repeat Simple_repeat 1 48 0 1 962 2267 307 105 40 chr6 49464843 49466634 -100050403 - L1_Rod LINE L1 -2726 3121 1203 1 962 1102 222 5 5 chr6 49466771 49466984 -100050053 - B3 SINE B2 -3 213 1 1 962 4236 145 86 68 chr6 49467073 49467947 -100049090 - RMER19B LTR ERVK -12 890 1 1 962 249 138 15 44 chr6 49469101 49469169 -100047868 + (TTTG)n Simple_repeat Simple_repeat 3 68 0 1 962 1261 26 0 0 chr6 49469687 49469838 -100047199 + L1Md_F2 LINE L1 6420 6570 -12 1 962 1483 264 57 47 chr6 49470149 49470658 -100046379 - Lx9 LINE L1 -171 7473 6960 1 962 29 47 0 0 chr6 49470796 49470839 -100046198 + AT_rich Low_complexity Low_complexity 1 43 0 1 962 459 0 0 0 chr6 49470961 49471012 -100046025 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 962 214 195 0 0 chr6 49471133 49471174 -100045863 + T-rich Low_complexity Low_complexity 1 41 0 1 962 7816 69 4 9 chr6 49471174 49472541 -100044496 - L1_Mus2 LINE L1 0 6654 5220 1 962 4395 119 30 3 chr6 49472541 49473242 -100043795 - RMER19A LTR ERVK -17 720 1 1 962 243 0 0 0 chr6 49474133 49474160 -100042877 + (T)n Simple_repeat Simple_repeat 1 27 0 1 962 339 82 0 0 chr6 49474502 49474509 -100042528 + (TTTCC)n Simple_repeat Simple_repeat 4 10 0 1 962 1191 107 0 0 chr6 49474509 49474687 -100042350 + (TTTTC)n Simple_repeat Simple_repeat 3 180 0 1 962 339 82 0 0 chr6 49474687 49474728 -100042309 + (TTTCC)n Simple_repeat Simple_repeat 3 43 0 1 962 429 76 0 0 chr6 49474724 49474790 -100042247 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 962 878 168 0 0 chr6 49474790 49474927 -100042110 - B1_Mm SINE Alu -6 141 5 1 962 247 261 145 8 chr6 49474976 49475107 -100041930 - L1M2c LINE L1 -4389 2460 2312 1 962 573 228 0 0 chr6 49475110 49475246 -100041791 + (TA)n Simple_repeat Simple_repeat 2 137 0 1 962 1136 307 51 84 chr6 49475249 49476118 -100040919 - L1M2c LINE L1 -4571 2278 1439 1 962 39065 42 0 3 chr6 49477751 49484066 -100032971 - L1Md_T LINE L1 0 6585 196 1 962 579 234 101 50 chr6 49484071 49484269 -100032768 - B3 SINE B2 -7 209 2 1 962 375 121 0 0 chr6 49484311 49484369 -100032668 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 962 21 36 0 0 chr6 49484377 49484405 -100032632 + AT_rich Low_complexity Low_complexity 1 28 0 1 962 2182 162 48 0 chr6 49485245 49485621 -100031416 - ORR1B1 LTR MaLR 0 394 1 1 962 510 17 0 0 chr6 49485950 49486009 -100031028 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 962 242 257 62 186 chr6 49486025 49486154 -100030883 + B1F2 SINE Alu 33 145 -4 1 962 3327 193 39 7 chr6 49486610 49487282 -100029755 - Lx5 LINE L1 0 7050 6358 1 962 347 127 16 0 chr6 49488005 49488068 -100028969 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 962 943 261 201 5 chr6 49488114 49488511 -100028526 + L1MB8 LINE L1 5640 6114 -64 1 962 357 257 76 7 chr6 49488753 49488898 -100028139 - LTR37A LTR ERV1 0 426 272 1 962 279 187 93 0 chr6 49488976 49489051 -100027986 - LTR37A LTR ERV1 -340 86 5 1 962 2106 149 41 16 chr6 49489527 49489896 -100027141 + ORR1C1 LTR MaLR 1 378 0 1 962 331 246 0 19 chr6 49490013 49490124 -100026913 + ID4_ SINE ID 19 124 -28 1 962 432 0 0 0 chr6 49490238 49490286 -100026751 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 962 299 269 15 0 chr6 49490592 49490659 -100026378 + PB1D10 SINE Alu 31 98 -19 1 962 192 340 172 25 chr6 49491750 49492070 -100024967 - L2a LINE L2 0 3426 3060 1 962 397 294 8 0 chr6 49492177 49492296 -100024741 - MER5A1 DNA MER1_type 0 166 47 1 962 881 98 9 8 chr6 49492827 49492964 -100024073 - Lx2B LINE L1 -1105 5895 5755 1 962 1338 98 0 1 chr6 49493752 49493940 -100023097 - Lx2A1 LINE L1 -453 5844 5626 1 962 2976 122 14 0 chr6 49493939 49494372 -100022665 + Lx2B LINE L1 5930 6368 -632 1 962 3719 96 6 16 chr6 49494372 49494921 -100022116 + L1Md_F2 LINE L1 6029 6571 -11 1 962 23 0 0 0 chr6 49495256 49495279 -100021758 + AT_rich Low_complexity Low_complexity 1 23 0 1 962 1972 137 41 3 chr6 49495574 49495918 -100021119 + ORR1B2 LTR MaLR 1 357 -10 1 962 314 279 28 28 chr6 49495905 49496012 -100021025 - MLT1A LTR MaLR -236 138 32 1 962 284 293 139 5 chr6 49496129 49496314 -100020723 + MIRb SINE MIR 57 264 -4 1 962 212 182 22 22 chr6 49497053 49497098 -100019939 + CT-rich Low_complexity Low_complexity 5 49 0 1 962 1018 205 24 0 chr6 49497120 49497325 -100019712 - B3 SINE B2 -5 211 2 1 962 729 85 229 0 chr6 49497750 49497868 -100019169 - B1_Mm SINE Alu -1 146 2 1 962 654 323 42 45 chr6 49498108 49498465 -100018572 + MLT1A LTR MaLR 19 374 0 1 962 302 293 121 0 chr6 49499036 49499135 -100017902 - MIRb SINE MIR -57 211 101 1 962 363 302 9 19 chr6 49499534 49499642 -100017395 - B4A SINE B4 -184 108 2 1 962 203 152 0 0 chr6 49500646 49500679 -100016358 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 962 352 213 0 0 chr6 49500691 49500752 -100016285 + B4A SINE B4 2 62 -230 2 962 4381 148 96 70 chr6 49500754 49501621 -100015416 + RMER19B LTR ERVK 1 889 -13 3 962 506 288 86 18 chr6 49501612 49501775 -100015262 + B4A SINE B4 78 251 -41 2 962 456 19 0 0 chr6 49501849 49501902 -100015135 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 962 610 182 222 6 chr6 49501902 49502073 -100014964 - Lx5 LINE L1 -11 7039 6832 5 962 1481 166 79 4 chr6 49502054 49502320 -100014717 + Lx5 LINE L1 6560 6845 -205 5 962 21 0 0 0 chr6 49502778 49502799 -100014238 + AT_rich Low_complexity Low_complexity 1 21 0 6 962 1621 239 48 106 chr6 49503312 49503382 -100013655 - Lx8 LINE L1 -116 7357 7283 7 962 2105 122 91 9 chr6 49503382 49503721 -100013316 - ORR1B2 LTR MaLR 0 367 1 8 962 1621 239 48 106 chr6 49503721 49504170 -100012867 - Lx8 LINE L1 -191 7282 6868 7 962 309 274 75 9 chr6 49504228 49504335 -100012702 - L1ME4a LINE L1 -4 6120 6007 9 962 1094 51 58 0 chr6 49504575 49504712 -100012325 + B1_Mus1 SINE Alu 2 146 -2 1 962 465 19 0 0 chr6 49504726 49504780 -100012257 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 962 672 13 0 0 chr6 49504856 49504933 -100012104 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 962 396 253 20 108 chr6 49505664 49505766 -100011271 - B1F SINE Alu -1 119 27 1 962 351 230 203 22 chr6 49505914 49505938 -100011099 - RSINE1 SINE B4 0 165 3 1 962 678 184 0 0 chr6 49505938 49506052 -100010985 - B3 SINE B2 -101 115 2 1 962 33 43 0 0 chr6 49506210 49506257 -100010780 + AT_rich Low_complexity Low_complexity 1 47 0 1 962 21 0 0 0 chr6 49506274 49506295 -100010742 + AT_rich Low_complexity Low_complexity 1 21 0 1 962 48 18 0 0 chr6 49506717 49506772 -100010265 + AT_rich Low_complexity Low_complexity 1 55 0 1 962 41 0 0 0 chr6 49506827 49506868 -100010169 + AT_rich Low_complexity Low_complexity 1 41 0 1 962 763 215 119 0 chr6 49507462 49507639 -100009398 + MT2A LTR ERVL 336 533 0 2 962 204 97 0 0 chr6 49508350 49508381 -100008656 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 962 537 263 165 48 chr6 49508397 49508451 -100008586 - B4 SINE B4 -14 278 216 2 962 594 39 0 0 chr6 49508451 49508528 -100008509 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 962 537 263 165 48 chr6 49508528 49508721 -100008316 - B4 SINE B4 -77 215 3 2 962 243 0 0 0 chr6 49508936 49508963 -100008074 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2 962 265 314 49 0 chr6 49508964 49509066 -100007971 - PB1D7 SINE Alu -11 109 3 2 962 6058 88 32 2 chr6 49509628 49510446 -100006591 - Lx LINE L1 -6 6648 5807 2 962 837 250 14 24 chr6 49510476 49510685 -100006352 - ID_B1 SINE B4 -16 208 2 2 962 803 230 7 0 chr6 49510813 49510961 -100006076 - B1_Mur3 SINE Alu 0 149 1 2 962 337 284 8 101 chr6 49510961 49510987 -100006050 - MT2B LTR ERVL -447 154 141 2 962 306 133 0 0 chr6 49511102 49511147 -100005890 - MT2A LTR ERVL -1 532 488 3 962 607 202 24 32 chr6 49511156 49511279 -100005758 - MTC LTR MaLR -292 129 8 3 962 195 204 0 0 chr6 49511638 49511682 -100005355 + (TATATG)n Simple_repeat Simple_repeat 1 44 0 3 962 957 252 97 8 chr6 49511690 49511958 -100005079 - B4 SINE B4 0 292 1 3 962 466 348 220 10 chr6 49512020 49512316 -100004721 + MLT1A0 LTR MaLR 8 365 0 3 962 393 22 0 0 chr6 49512348 49512394 -100004643 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 962 1108 256 123 6 chr6 49512958 49513272 -100003765 - MTE-int LTR MaLR -375 1205 855 3 962 386 296 0 0 chr6 49513272 49513353 -100003684 + B4A SINE B4 2 82 -210 3 962 2430 165 15 5 chr6 49513363 49513766 -100003271 - MTC LTR MaLR 0 421 15 3 962 594 320 44 58 chr6 49513764 49513970 -100003067 + B4A SINE B4 90 292 0 3 962 230 318 0 0 chr6 49514045 49514108 -100002929 - MTE-int LTR MaLR -748 832 770 3 962 618 14 0 0 chr6 49514119 49514190 -100002847 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 962 269 335 67 36 chr6 49514354 49514549 -100002488 + MIRb SINE MIR 55 255 -13 4 962 486 109 21 11 chr6 49514974 49515067 -100001970 + (TCTCCC)n Simple_repeat Simple_repeat 4 97 0 4 962 180 222 43 22 chr6 49515326 49515372 -100001665 + L4 LINE RTE 902 948 -1081 4 962 976 223 28 78 chr6 49515666 49516049 -100000988 - ORR1C1 LTR MaLR 0 394 7 4 962 2943 152 38 14 chr6 49516235 49516742 -100000295 + RLTR12B LTR ERVK 1 519 -9 4 962 324 0 0 0 chr6 49516750 49516786 -100000251 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 962 9704 98 17 13 chr6 49516786 49518445 -99998592 - Lx3C LINE L1 -13 6963 5297 4 962 2986 12 42 0 chr6 49518445 49518777 -99998260 - ORR1A0 LTR MaLR 0 346 1 4 962 6449 102 4 12 chr6 49518777 49519103 -99997934 - Lx3C LINE L1 -590 5296 4979 4 962 2002 84 11 3 chr6 49519103 49519389 -99997648 + L1_Mur1 LINE L1 3309 3596 -2290 4 962 458 149 0 0 chr6 49519392 49519466 -99997571 + L1_Mur1 LINE L1 4903 4976 -910 4 962 302 261 59 34 chr6 49519496 49519615 -99997422 + MER21B LTR ERV1 613 734 -129 4 962 360 354 62 44 chr6 49519732 49520007 -99997030 + L2 LINE L2 2522 2801 -618 5 962 262 324 54 27 chr6 49520647 49520758 -99996279 - MIRc SINE MIR -34 234 121 5 962 380 322 114 57 chr6 49521268 49521305 -99995732 + RMER15 LTR ERVL 339 374 -201 5 962 3818 203 86 55 chr6 49521305 49522234 -99994803 + RMER17B LTR ERVK 1 958 0 5 962 380 322 114 57 chr6 49522234 49522407 -99994630 + RMER15 LTR ERVL 375 561 -14 5 962 2364 146 19 0 chr6 49522855 49523226 -99993811 - ORR1C1 LTR MaLR 0 378 1 5 962 279 321 76 90 chr6 49523462 49523606 -99993431 - MLT1A LTR MaLR -189 185 44 5 962 194 322 31 94 chr6 49524085 49524212 -99992825 + MIRm SINE MIR 157 275 -1 5 962 215 266 99 25 chr6 49524543 49524554 -99992483 - B3A SINE B2 -104 94 8 5 962 396 257 0 0 chr6 49524554 49524624 -99992413 - ID4 SINE ID -6 77 8 5 962 315 313 94 40 chr6 49524675 49524898 -99992139 - L2 LINE L2 -1039 2380 2146 5 962 370 196 10 10 chr6 49524993 49525096 -99991941 + (TG)n Simple_repeat Simple_repeat 1 103 0 6 962 1081 288 14 14 chr6 49525096 49525388 -99991649 - B4A SINE B4 0 292 1 6 962 739 279 56 0 chr6 49525408 49525605 -99991432 - B3 SINE B2 0 216 9 6 962 701 301 102 30 chr6 49526064 49526328 -99990709 - MTEa LTR MaLR -6 373 91 6 962 554 309 30 63 chr6 49526579 49526880 -99990157 + B4A SINE B4 2 292 0 6 962 286 282 207 74 chr6 49527812 49528188 -99988849 - LTR37A LTR ERV1 0 426 1 6 962 1158 138 16 26 chr6 49529309 49529503 -99987534 + URR1A DNA MER1_type 35 226 0 6 962 494 281 52 61 chr6 49529503 49529556 -99987481 - CYRA11_Mm Unknown Y-chromosome -450 167 117 6 962 664 159 7 7 chr6 49529643 49529782 -99987255 + G-rich Low_complexity Low_complexity 2 140 0 6 962 333 0 0 0 chr6 49530902 49530939 -99986098 + (T)n Simple_repeat Simple_repeat 1 37 0 6 962 441 0 0 0 chr6 49534078 49534127 -99982910 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 962 339 265 69 0 chr6 49535464 49535566 -99981471 + Charlie4a DNA MER1_type 399 507 -1 7 962 507 257 111 17 chr6 49536014 49536300 -99980737 + MLT1A0 LTR MaLR 1 345 -20 7 962 246 32 0 0 chr6 49536345 49536376 -99980661 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 962 297 279 144 23 chr6 49537067 49537199 -99979838 + MIRc SINE MIR 46 193 -75 7 962 247 310 82 44 chr6 49537714 49537810 -99979227 + MIR SINE MIR 6 95 -167 7 962 835 221 0 0 chr6 49537810 49537959 -99979078 - B1_Mur1 SINE Alu 0 149 1 7 962 247 310 82 44 chr6 49537959 49538068 -99978969 + MIR SINE MIR 96 219 -43 7 962 1736 279 78 9 chr6 49538303 49538832 -99978205 - Tigger7 DNA MER2_type -1920 571 7 7 962 334 343 183 13 chr6 49539097 49539555 -99977482 + L2 LINE L2 2355 2890 -529 7 962 1054 16 75 0 chr6 49539566 49540492 -99976545 + (CCTG)n Simple_repeat Simple_repeat 1 995 0 7 962 198 293 65 26 chr6 49541708 49541785 -99975252 - MIRc SINE MIR -129 139 60 8 962 199 310 17 0 chr6 49541794 49541852 -99975185 - MIRm SINE MIR -105 171 113 8 962 668 198 32 40 chr6 49542182 49542308 -99974729 - ID_B1 SINE B4 -10 214 90 8 962 364 279 34 34 chr6 49542229 49542318 -99974719 - PB1D10 SINE Alu -27 90 2 8 962 227 182 0 35 chr6 49542386 49542443 -99974594 + A-rich Low_complexity Low_complexity 3 57 0 8 962 423 0 0 0 chr6 49542471 49542518 -99974519 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 962 240 215 121 15 chr6 49542531 49542597 -99974440 + ID4_ SINE ID 2 74 -9 8 962 939 293 65 0 chr6 49544778 49545130 -99971907 + L1M2 LINE L1 3631 4005 -2138 8 120 545 308 74 5 chr6 49545169 49545384 -99971653 + L1M2 LINE L1 5375 5604 -696 8 963 484 283 202 0 chr6 49545388 49545561 -99971476 + B3 SINE B2 1 208 -8 8 963 295 266 138 0 chr6 49545601 49545707 -99971330 - B1F2 SINE Alu -25 124 3 8 963 245 242 13 120 chr6 49545707 49545753 -99971284 - RLTR5_Mm LTR ERV1 -433 195 158 9 963 1305 83 0 0 chr6 49546605 49546785 -99970252 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 9 963 366 80 0 0 chr6 49546785 49546835 -99970202 + (TCTCC)n Simple_repeat Simple_repeat 1 50 0 9 963 10040 106 16 10 chr6 49546835 49549003 -99968034 - L1_Mus1 LINE L1 0 6567 4430 9 963 1204 54 7 0 chr6 49549003 49549150 -99967887 - B1_Mus1 SINE Alu 0 148 1 9 963 9651 166 14 42 chr6 49549150 49549499 -99967538 - L1_Mus1 LINE L1 -1448 4429 4086 9 963 497 205 150 25 chr6 49549885 49550005 -99967032 + B1_Mur2 SINE Alu 2 136 -13 9 963 180 97 0 0 chr6 49550208 49550239 -99966798 + (T)n Simple_repeat Simple_repeat 1 31 0 9 963 1158 41 0 82 chr6 49550241 49550400 -99966637 - B1_Mm SINE Alu 0 147 2 9 963 238 315 96 44 chr6 49550402 49550538 -99966499 - ORR1E LTR MaLR -215 144 2 9 963 1024 236 129 69 chr6 49550643 49550976 -99966061 - MTEa LTR MaLR -14 365 13 9 963 204 226 0 19 chr6 49551109 49551163 -99965874 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 963 217 325 111 24 chr6 49551193 49551319 -99965718 - B4A SINE B4 -153 139 3 1 963 519 45 0 0 chr6 49551453 49551519 -99965518 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 963 665 253 6 53 chr6 49551577 49551748 -99965289 - RSINE1 SINE B4 0 165 3 1 963 378 325 25 8 chr6 49551956 49552074 -99964963 + MLT1A0 LTR MaLR 211 330 -35 1 963 391 320 0 0 chr6 49552099 49552196 -99964841 - PB1D10 SINE Alu -19 98 2 1 963 205 83 62 0 chr6 49552760 49552808 -99964229 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 1 963 419 282 75 75 chr6 49553021 49553247 -99963790 - MER2 DNA MER2_type -5 340 115 1 963 508 290 121 67 chr6 49553411 49553725 -99963312 - MLT1B LTR MaLR -7 383 53 1 963 372 273 89 22 chr6 49554974 49555109 -99961928 + MER5B DNA MER1_type 24 167 -11 1 963 576 217 87 77 chr6 49557756 49557951 -99959086 - MER20 DNA MER1_type -1 218 22 1 963 402 108 0 0 chr6 49558603 49558677 -99958360 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 963 280 237 97 62 chr6 49560048 49560192 -99956845 - L1MC5 LINE L1 -535 7426 7278 1 963 290 286 40 75 chr6 49560717 49560891 -99956146 - B3A SINE B2 -4 194 27 1 963 265 219 16 0 chr6 49560980 49561044 -99955993 + MLT2B4 LTR ERVL 1 65 -491 1 963 886 265 53 103 chr6 49561310 49561535 -99955502 + MTE2a LTR MaLR 1 197 -182 1 963 264 30 0 0 chr6 49561535 49561568 -99955469 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 1 963 886 265 53 103 chr6 49561568 49561741 -99955296 + MTE2a LTR MaLR 198 379 0 1 963 1294 166 26 37 chr6 49561746 49562015 -99955022 + ORR1B1-int LTR MaLR 1244 1509 0 1 963 2260 128 53 11 chr6 49562015 49562393 -99954644 + ORR1B1 LTR MaLR 1 394 0 1 963 2444 189 19 35 chr6 49562802 49563324 -99953713 - RMER20A LTR ERVK -2 514 1 1 963 374 231 53 0 chr6 49564695 49564864 -99952173 + (CACTC)n Simple_repeat Simple_repeat 3 180 0 1 963 475 244 26 11 chr6 49564882 49565239 -99951798 + (CACTC)n Simple_repeat Simple_repeat 1 362 0 1 963 245 209 0 0 chr6 49565609 49565652 -99951385 + B1F SINE Alu 4 46 -103 1 963 215 255 0 18 chr6 49565652 49565665 -99951372 + B4A SINE B4 89 143 -149 1 963 37195 61 1 24 chr6 49566281 49572170 -99944867 + L1Md_T LINE L1 99 5586 -297 1 963 8179 56 0 0 chr6 49572170 49573188 -99943849 + L1Md_T LINE L1 5587 6582 0 1 963 1595 25 0 15 chr6 49573188 49573409 -99943628 + L1Md_F2 LINE L1 6382 6582 0 1 963 377 123 0 15 chr6 49573517 49573583 -99943454 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 1 963 323 154 0 15 chr6 49573665 49573731 -99943306 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 1 963 266 281 91 30 chr6 49573935 49574067 -99942970 - MLT1A1 LTR MaLR 0 408 269 1 963 294 263 21 0 chr6 49574418 49574513 -99942524 - L2 LINE L2 -1738 1681 1585 1 963 660 248 181 11 chr6 49574563 49574844 -99942193 - L1MB1 LINE L1 -7 6161 5833 1 963 756 221 6 25 chr6 49576186 49576348 -99940689 - RMER10A LTR ERVL -281 161 3 1 963 466 156 156 0 chr6 49576348 49576425 -99940612 + RMER15 LTR ERVL 453 545 -30 1 963 424 0 36 0 chr6 49576425 49576481 -99940556 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 963 466 156 156 0 chr6 49576481 49576509 -99940528 + RMER15 LTR ERVL 546 574 -1 1 963 217 229 35 28 chr6 49576726 49576870 -99940167 + (CATATA)n Simple_repeat Simple_repeat 4 148 0 1 963 564 159 112 0 chr6 49577026 49577133 -99939904 + RMER20B LTR ERVK 1 119 -508 1 963 1050 238 0 5 chr6 49578108 49578323 -99938714 - B3 SINE B2 0 216 3 1 963 22 0 0 0 chr6 49579304 49579326 -99937711 + AT_rich Low_complexity Low_complexity 1 22 0 1 963 2007 165 3 6 chr6 49579401 49579761 -99937276 - ORR1B2 LTR MaLR -8 359 1 1 963 987 227 13 18 chr6 49579949 49580178 -99936859 + ORR1E LTR MaLR 1 228 -131 1 963 270 316 32 0 chr6 49580181 49580276 -99936761 + PB1D10 SINE Alu 19 116 -1 1 963 2804 143 54 105 chr6 49580286 49580934 -99936103 + RLTR18 LTR ERVK 1 615 -1 1 963 2130 162 58 10 chr6 49582690 49583089 -99933948 + MTC LTR MaLR 1 418 -3 1 963 23 0 0 0 chr6 49583361 49583384 -99933653 + AT_rich Low_complexity Low_complexity 1 23 0 1 963 27 49 0 0 chr6 49583455 49583496 -99933541 + AT_rich Low_complexity Low_complexity 1 41 0 1 963 244 310 0 0 chr6 49584268 49584326 -99932711 - tRNA-Ala-GCG tRNA tRNA -13 62 5 1 963 221 278 103 0 chr6 49585307 49585404 -99931633 - MIRc SINE MIR -138 130 24 1 963 966 63 0 0 chr6 49586635 49586761 -99930276 + (GA)n Simple_repeat Simple_repeat 2 127 0 1 963 414 237 133 0 chr6 49586820 49586955 -99930082 + L1MA10 LINE L1 6169 6321 -13 1 963 1292 221 109 21 chr6 49587053 49587391 -99929646 + ORR1D2 LTR MaLR 3 370 0 1 963 348 314 58 0 chr6 49588689 49588810 -99928227 + MIRm SINE MIR 24 151 -125 1 963 282 222 211 0 chr6 49588993 49589083 -99927954 - PB1D10 SINE Alu -6 111 3 1 963 432 0 0 0 chr6 49592810 49592858 -99924179 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 963 5321 99 24 1 chr6 49592923 49593682 -99923355 + Lx2 LINE L1 5868 6643 -354 1 963 1489 122 5 0 chr6 49593682 49593904 -99923133 + Lx2 LINE L1 6775 6997 0 1 963 379 305 31 0 chr6 49594472 49594600 -99922437 + RMER15 LTR ERVL 431 562 -13 1 963 372 43 0 0 chr6 49595635 49595681 -99921356 + (CTA)n Simple_repeat Simple_repeat 2 47 0 1 963 2053 136 26 59 chr6 49595681 49596104 -99920933 + RMER17C LTR ERVK 2 410 0 1 963 229 358 58 8 chr6 49596262 49596383 -99920654 - MER117 DNA MER1_type -12 185 59 1 963 236 355 33 8 chr6 49596713 49596835 -99920202 - L2c LINE L2 0 3387 3263 1 963 2983 140 15 41 chr6 49596856 49597393 -99919644 - RLTR28 LTR ERVL -1 523 1 1 963 544 322 126 21 chr6 49597612 49597986 -99919051 - Lx8 LINE L1 -9 7464 7052 1 963 229 347 13 39 chr6 49598043 49598121 -99918916 + MER21B LTR ERV1 12 87 -776 1 963 225 94 0 0 chr6 49598198 49598230 -99918807 + (TTC)n Simple_repeat Simple_repeat 2 33 0 1 963 369 62 0 0 chr6 49599265 49599313 -99917724 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 963 582 342 61 43 chr6 49599373 49599524 -99917513 + ORR1E LTR MaLR 9 164 -195 1 963 2226 151 61 11 chr6 49599524 49599899 -99917138 + ORR1B1 LTR MaLR 1 394 0 1 963 582 342 61 43 chr6 49599899 49600092 -99916945 + ORR1E LTR MaLR 165 358 -1 1 963 247 358 44 1 chr6 49600097 49600232 -99916805 - MIRb SINE MIR -109 159 16 1 963 1184 172 370 78 chr6 49600232 49600594 -99916443 + MT2A LTR ERVL 1 478 -55 1 963 402 21 0 0 chr6 49600594 49600641 -99916396 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 963 1184 172 370 78 chr6 49600641 49600689 -99916348 + MT2A LTR ERVL 479 530 -3 1 963 217 379 43 7 chr6 49600689 49600701 -99916336 - MIR3 SINE MIR -193 15 2 1 963 237 308 74 8 chr6 49600886 49601007 -99916030 + MIRb SINE MIR 64 192 -76 1 963 1548 196 128 5 chr6 49601472 49601847 -99915190 + MTC LTR MaLR 1 421 0 1 963 362 269 113 30 chr6 49602212 49602353 -99914684 - MLT1A1 LTR MaLR 0 408 239 1 963 4661 116 51 34 chr6 49602746 49603710 -99913327 - RMER17B LTR ERVK 0 958 1 1 963 1032 215 10 0 chr6 49605808 49606013 -99911024 - B3 SINE B2 -9 207 1 1 963 276 186 0 0 chr6 49606113 49606172 -99910865 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 1 963 350 301 75 31 chr6 49608914 49609140 -99907897 - L1MC5 LINE L1 -749 7212 6977 1 963 180 0 0 0 chr6 49610746 49610766 -99906271 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 1 963 668 257 101 35 chr6 49611926 49612184 -99904853 - Tigger5 DNA MER2_type 0 2406 2132 1 963 409 331 81 58 chr6 49612584 49612981 -99904056 + MER90 LTR ERV1 161 566 -9 1 963 1283 205 141 27 chr6 49612982 49613358 -99903679 - MTD LTR MaLR 0 419 1 1 963 642 13 0 0 chr6 49613944 49614019 -99903018 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1 963 236 200 17 0 chr6 49614577 49614637 -99902400 + GA-rich Low_complexity Low_complexity 1 61 0 1 963 28 48 0 0 chr6 49614746 49614788 -99902249 + AT_rich Low_complexity Low_complexity 1 42 0 1 963 514 179 370 19 chr6 49614801 49614955 -99902082 - B3 SINE B2 -8 208 1 1 963 369 288 88 68 chr6 49615385 49615679 -99901358 - HAL1 LINE L1 -139 2368 2069 1 963 786 216 30 55 chr6 49615904 49616105 -99900932 - B3A SINE B2 0 198 3 1 963 1872 167 33 19 chr6 49616751 49616909 -99900128 + MTC LTR MaLR 40 203 -218 1 963 828 0 0 0 chr6 49616909 49617001 -99900036 + (CAAAG)n Simple_repeat Simple_repeat 3 94 0 1 963 1872 167 33 19 chr6 49617001 49617209 -99899828 + MTC LTR MaLR 204 411 -10 1 963 33 43 0 0 chr6 49617491 49617538 -99899499 + AT_rich Low_complexity Low_complexity 1 47 0 1 963 2267 84 12 67 chr6 49617631 49617977 -99899060 - ORR1A2 LTR MaLR 0 327 1 1 963 408 99 0 0 chr6 49618022 49618093 -99898944 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 963 689 259 65 73 chr6 49618229 49618450 -99898587 - ORR1D2 LTR MaLR 0 370 155 1 963 660 80 0 0 chr6 49618450 49618550 -99898487 + (GA)n Simple_repeat Simple_repeat 1 100 0 1 963 689 259 65 73 chr6 49618550 49618699 -99898338 - ORR1D2 LTR MaLR -216 154 3 1 963 342 0 0 0 chr6 49618797 49618835 -99898202 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 1 963 1082 268 106 38 chr6 49619253 49619844 -99897193 - L1MA7 LINE L1 -78 6213 5580 1 963 2149 195 40 14 chr6 49619919 49620363 -99896674 - Lx5 LINE L1 -495 6555 6083 1 963 774 191 56 0 chr6 49620363 49620525 -99896512 + Lx5 LINE L1 5910 6080 -970 1 963 506 306 76 116 chr6 49621709 49621986 -99895051 - B4A SINE B4 -25 267 2 1 963 675 148 8 25 chr6 49623156 49623293 -99893744 + B1_Mur1 SINE Alu 15 149 0 1 963 342 0 0 0 chr6 49623324 49623362 -99893675 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 963 7180 71 9 23 chr6 49623827 49624802 -99892235 - L1_Mus3 LINE L1 0 6638 5677 1 963 2932 85 3 8 chr6 49624800 49625192 -99891845 + L1_Mus3 LINE L1 5304 5693 -190 1 963 248 0 31 0 chr6 49625566 49625598 -99891439 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 963 2642 146 42 2 chr6 49625640 49626065 -99890972 + Lx5 LINE L1 6172 6613 -437 1 963 454 166 189 20 chr6 49626058 49626206 -99890831 + Lx5 LINE L1 6863 7035 -15 1 963 525 174 0 10 chr6 49626512 49626611 -99890426 + MTD LTR MaLR 1 98 -321 2 963 237 300 57 0 chr6 49626605 49626675 -99890362 + B3A SINE B2 114 187 -11 2 963 291 28 0 0 chr6 49627822 49627858 -99889179 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 963 2153 203 98 13 chr6 49628095 49628624 -99888413 + RMER15 LTR ERVL 2 575 0 2 963 1261 160 61 5 chr6 49629269 49629483 -99887554 + URR1A DNA MER1_type 1 226 0 2 963 5117 133 4 11 chr6 49629532 49630337 -99886700 - L1_Mur2 LINE L1 -459 5418 4620 2 963 2824 140 11 0 chr6 49630348 49630783 -99886254 + L1_Mur2 LINE L1 5425 5864 -13 2 963 3287 151 7 23 chr6 49630783 49631352 -99885685 + Lx4B LINE L1 6499 7058 0 2 963 663 285 83 91 chr6 49632568 49633171 -99883866 - L1MD2 LINE L1 -115 6244 5647 2 963 469 197 196 60 chr6 49633204 49633463 -99883574 - ORR1E LTR MaLR 0 359 67 2 963 243 0 0 0 chr6 49633463 49633490 -99883547 + (CAG)n Simple_repeat Simple_repeat 2 28 0 2 963 469 197 196 60 chr6 49633490 49633511 -99883526 - ORR1E LTR MaLR -293 66 42 2 963 4622 149 34 4 chr6 49633516 49634284 -99882753 + RMER13B LTR ERVK 1 791 -117 2 963 1088 227 96 33 chr6 49634762 49635095 -99881942 + ORR1D2 LTR MaLR 1 354 -16 2 963 291 207 55 44 chr6 49635219 49635310 -99881727 - L1_Rod LINE L1 -2138 4005 3886 2 963 1380 295 80 39 chr6 49635386 49636426 -99880611 + L1M2 LINE L1 4571 5663 -184 2 963 1036 223 14 0 chr6 49638797 49639008 -99878029 + B3 SINE B2 3 216 0 2 963 420 20 0 0 chr6 49640097 49640146 -99876891 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 963 189 244 0 0 chr6 49640190 49640231 -99876806 - MIRc SINE MIR -113 155 115 2 963 246 331 174 20 chr6 49640493 49640786 -99876251 + MamGypLTR1c LTR Gypsy 49 386 -417 2 963 540 241 118 24 chr6 49640968 49641138 -99875899 - B3A SINE B2 -11 187 2 2 963 275 362 98 42 chr6 49642058 49642485 -99874552 - LTR33 LTR ERVL -50 465 15 2 963 360 0 0 0 chr6 49643307 49643347 -99873690 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 963 610 255 14 7 chr6 49643398 49643536 -99873501 + RSINE1 SINE B4 5 143 -22 2 963 198 71 0 0 chr6 49643565 49643593 -99873444 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 963 911 193 205 0 chr6 49643749 49643920 -99873117 + B3 SINE B2 1 206 -10 2 963 1603 125 59 30 chr6 49647787 49648092 -99868945 + RLTR23 LTR ERV1 117 430 0 2 963 571 259 40 40 chr6 49648227 49648428 -99868609 - L1MC4 LINE L1 -997 7045 6845 2 963 507 220 0 25 chr6 49648848 49648969 -99868068 + PB1D9 SINE Alu 2 119 -1 2 963 1126 76 7 0 chr6 49648999 49649144 -99867893 + B1_Mm SINE Alu 2 147 0 2 963 201 147 0 0 chr6 49649146 49649180 -99867857 + (A)n Simple_repeat Simple_repeat 1 34 0 2 963 594 0 0 0 chr6 49651160 49651226 -99865811 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 963 212 0 36 0 chr6 49651519 49651547 -99865490 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 963 1123 270 99 5 chr6 49652002 49652407 -99864630 - Lx9 LINE L1 -5 7639 7197 2 963 1694 201 148 22 chr6 49652408 49652866 -99864171 - RMER20A LTR ERVK 0 516 1 2 963 2676 243 46 64 chr6 49652871 49653610 -99863427 - Lx9 LINE L1 -446 7198 6473 2 963 23 0 0 0 chr6 49653655 49653678 -99863359 + AT_rich Low_complexity Low_complexity 1 23 0 2 963 22 56 0 0 chr6 49654043 49654079 -99862958 + AT_rich Low_complexity Low_complexity 1 36 0 2 963 680 270 12 0 chr6 49654440 49654603 -99862434 + ID_B1 SINE B4 3 167 -57 2 963 391 274 29 0 chr6 49654528 49654630 -99862407 + PB1D10 SINE Alu 12 116 -1 2 963 2135 141 29 75 chr6 49655085 49655498 -99861539 + ORR1B1 LTR MaLR 1 394 0 2 963 235 317 137 10 chr6 49656802 49656904 -99860133 - MIR3 SINE MIR -40 168 54 2 963 732 149 26 0 chr6 49657795 49657949 -99859088 + CT-rich Low_complexity Low_complexity 1 158 0 2 963 189 171 0 0 chr6 49657951 49657986 -99859051 + C-rich Low_complexity Low_complexity 6 40 0 2 963 765 123 0 6 chr6 49659225 49659347 -99857690 + B1_Mur4 SINE Alu 1 115 -5 2 963 269 143 36 0 chr6 49659395 49659451 -99857586 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 2 963 261 272 12 24 chr6 49659455 49659538 -99857499 - B4A SINE B4 0 292 211 2 963 356 228 180 22 chr6 49659535 49659674 -99857363 + B4A SINE B4 52 212 -80 2 963 2727 252 91 40 chr6 49660644 49660812 -99856225 + Lx8 LINE L1 6027 6181 -1292 2 963 1160 200 0 18 chr6 49660812 49661031 -99856006 + B3 SINE B2 2 216 0 2 963 2727 252 91 40 chr6 49661031 49661742 -99855295 + Lx8 LINE L1 6182 6951 -522 2 963 1505 178 26 147 chr6 49664046 49664467 -99852570 + ORR1D1 LTR MaLR 5 374 0 2 963 688 88 9 17 chr6 49664969 49665084 -99851953 + (TCCA)n Simple_repeat Simple_repeat 3 116 0 2 963 21 0 0 0 chr6 49665263 49665284 -99851753 + AT_rich Low_complexity Low_complexity 1 21 0 2 963 269 293 73 22 chr6 49665835 49665971 -99851066 + MIR SINE MIR 91 233 -29 2 963 22 0 0 0 chr6 49666088 49666110 -99850927 + AT_rich Low_complexity Low_complexity 1 22 0 2 963 914 231 4 58 chr6 49667992 49668217 -99848820 + B3 SINE B2 1 213 -3 2 963 865 210 102 0 chr6 49668586 49668772 -99848265 - B3 SINE B2 -10 206 2 2 963 396 202 202 0 chr6 49668841 49668940 -99848097 - B1_Mur1 SINE Alu -20 129 11 2 963 832 80 14 68 chr6 49669112 49669260 -99847777 + RLTR31A_Mm LTR ERVK 1 140 -444 2 963 1413 284 48 18 chr6 49669265 49670140 -99846897 + Lx6 LINE L1 6097 7313 -147 2 963 288 0 0 0 chr6 49670337 49670369 -99846668 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 963 14185 61 9 1 chr6 49670567 49672370 -99844667 - L1Md_F2 LINE L1 -527 5356 3540 2 963 1798 43 0 0 chr6 49672369 49672580 -99844457 + L1Md_F2 LINE L1 5376 5586 -297 2 963 8479 30 3 2 chr6 49672580 49673562 -99843475 + L1Md_F2 LINE L1 5587 6569 -13 2 963 27 96 0 0 chr6 49673658 49673741 -99843296 + AT_rich Low_complexity Low_complexity 1 83 0 2 963 849 266 138 52 chr6 49673866 49674386 -99842651 - RMER13A LTR ERVK -201 659 95 2 963 342 0 0 0 chr6 49674589 49674627 -99842410 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 963 354 80 0 0 chr6 49674627 49674676 -99842361 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 963 238 304 424 31 chr6 49674777 49674974 -99842063 - B4A SINE B4 -18 274 1 2 963 191 231 0 0 chr6 49675041 49675080 -99841957 - MIR SINE MIR -114 148 110 2 963 395 38 19 0 chr6 49675141 49675194 -99841843 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 963 1127 288 66 10 chr6 49675197 49675636 -99841401 - Lx8 LINE L1 0 7473 7000 2 963 194 229 188 27 chr6 49675699 49675811 -99841226 - MIR SINE MIR -100 162 33 2 964 1153 271 108 19 chr6 49677732 49678149 -99838888 + RMER5 LTR ERV1 77 530 -4 2 964 180 111 0 0 chr6 49678447 49678474 -99838563 + (TCCC)n Simple_repeat Simple_repeat 2 28 0 2 964 239 198 12 58 chr6 49678474 49678560 -99838477 + T-rich Low_complexity Low_complexity 3 84 0 2 964 378 277 173 9 chr6 49678583 49678809 -99838228 - L1MD1 LINE L1 -395 5847 5585 2 964 15148 157 11 6 chr6 49678846 49680194 -99836843 + Lx LINE L1 3294 4640 -1243 2 964 194 0 39 0 chr6 49680194 49680220 -99836817 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 964 15148 124 24 7 chr6 49680220 49682205 -99834832 + Lx LINE L1 4641 6653 -1 2 964 789 255 5 6 chr6 49682215 49682411 -99834626 + B3 SINE B2 20 215 -1 2 964 429 261 44 13 chr6 49682584 49682784 -99834253 - L1MD1 LINE L1 -2173 3973 3740 2 964 4137 152 84 48 chr6 49683076 49683929 -99833108 - RMER19B LTR ERVK 0 902 19 2 964 312 27 0 0 chr6 49683955 49683992 -99833045 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 964 306 217 0 0 chr6 49683993 49684062 -99832975 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 2 964 1220 206 140 140 chr6 49684066 49684552 -99832485 - MT2A LTR ERVL -44 489 4 2 964 298 283 112 0 chr6 49684645 49684783 -99832254 - MIRb SINE MIR -107 161 2 2 964 643 269 59 12 chr6 49685516 49685685 -99831352 + B4 SINE B4 99 275 -17 2 964 345 125 0 0 chr6 49685706 49685762 -99831275 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 964 393 39 0 0 chr6 49685762 49685812 -99831225 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 964 389 322 28 0 chr6 49685841 49685984 -99831053 + Charlie1b DNA MER1_type 44 190 -333 2 964 29 0 0 0 chr6 49686060 49686089 -99830948 + AT_rich Low_complexity Low_complexity 1 29 0 2 964 626 167 111 0 chr6 49686222 49686348 -99830689 - RMER6D LTR ERVK 0 720 581 2 964 1722 148 30 32 chr6 49686349 49686711 -99830326 - RMER16 LTR ERVK -1 532 1 2 964 884 170 73 24 chr6 49686711 49686907 -99830130 - RMER6D LTR ERVK -153 567 362 2 964 564 15 0 0 chr6 49686912 49686977 -99830060 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 964 1847 123 7 0 chr6 49686977 49687270 -99829767 - RMER6D LTR ERVK -409 311 17 2 964 3440 30 5 0 chr6 49688248 49688642 -99828395 + MTA_Mm LTR MaLR 1 396 0 2 964 557 275 36 87 chr6 49688750 49688945 -99828092 - B3A SINE B2 -13 185 1 2 964 371 344 32 0 chr6 49689659 49689813 -99827224 + MLT1I LTR MaLR 50 208 -203 2 964 776 275 41 20 chr6 49689919 49690164 -99826873 - MTD LTR MaLR -141 278 29 2 964 288 272 121 17 chr6 49690235 49690351 -99826686 + MLT1I LTR MaLR 281 408 -3 2 964 253 327 103 28 chr6 49691051 49691158 -99825879 - ORR1E LTR MaLR -242 117 3 2 964 527 354 99 29 chr6 49691608 49692051 -99824986 - LTR82A LTR ERVL -380 492 19 2 964 348 340 119 17 chr6 49692465 49692878 -99824159 + LTR16B LTR ERVL 5 459 -4 2 964 306 0 0 0 chr6 49693538 49693572 -99823465 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2 964 279 311 11 11 chr6 49694337 49694428 -99822609 + B3A SINE B2 92 182 -16 2 964 234 299 39 0 chr6 49695934 49696011 -99821026 + RMER30 DNA MER1_type 122 201 -1 2 964 187 345 34 61 chr6 49696512 49696660 -99820377 - L2c LINE L2 -240 3147 3004 2 964 204 200 0 0 chr6 49697346 49697356 -99819681 + (TCTG)n Simple_repeat Simple_repeat 4 13 0 2 964 298 275 0 0 chr6 49697356 49697425 -99819612 + ID4 SINE ID 2 70 -13 3 964 204 200 0 0 chr6 49697425 49697454 -99819583 + (TCTG)n Simple_repeat Simple_repeat 3 31 0 3 964 233 279 26 96 chr6 49697790 49697905 -99819132 - MLT1D LTR MaLR -327 178 72 3 964 1143 57 0 0 chr6 49698573 49698713 -99818324 + B1_Mus1 SINE Alu 1 140 -8 3 964 202 29 57 0 chr6 49698751 49698786 -99818251 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 3 964 246 294 110 0 chr6 49699155 49699264 -99817773 + RMER15 LTR ERVL 440 560 -15 3 964 653 289 7 20 chr6 49701258 49701410 -99815627 + RSINE1 SINE B4 8 157 -8 3 964 549 157 42 0 chr6 49701410 49701576 -99815461 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 3 964 869 311 19 4 chr6 49701887 49702148 -99814889 + B4 SINE B4 26 290 -2 3 964 290 252 7 0 chr6 49703075 49703222 -99813815 + (TA)n Simple_repeat Simple_repeat 2 149 0 3 964 4124 175 14 192 chr6 49704192 49704771 -99812266 + L1_Mur1 LINE L1 4321 4862 -1024 3 964 1186 62 7 0 chr6 49704771 49704917 -99812120 + B1_Mus2 SINE Alu 1 147 0 3 964 4124 175 14 192 chr6 49704917 49705274 -99811763 + L1_Mur1 LINE L1 4863 5184 -702 3 964 586 215 142 25 chr6 49705274 49705436 -99811601 - B3 SINE B2 0 216 36 3 964 4124 175 14 192 chr6 49705436 49705882 -99811155 + L1_Mur1 LINE L1 5185 5589 -297 3 964 7708 68 8 2 chr6 49705882 49706858 -99810179 + L1Md_F2 LINE L1 5587 6568 -14 3 964 236 30 30 0 chr6 49707321 49707354 -99809683 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 964 426 326 13 39 chr6 49707392 49707545 -99809492 - RSINE1 SINE B4 -10 155 7 3 964 288 346 106 16 chr6 49708490 49708810 -99808227 + L1MD LINE L1 2739 3087 -3059 3 964 21 0 0 0 chr6 49708898 49708919 -99808118 + AT_rich Low_complexity Low_complexity 1 21 0 3 964 402 300 165 23 chr6 49709105 49709371 -99807666 + L1MC LINE L1 3267 3570 -2576 3 964 347 318 182 8 chr6 49709696 49709959 -99807078 - MER82 DNA MER2_type -85 568 260 3 964 988 156 201 0 chr6 49709962 49710141 -99806896 + B3 SINE B2 1 215 -1 3 964 429 54 0 0 chr6 49710169 49710225 -99806812 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 964 324 127 0 0 chr6 49710848 49710903 -99806134 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 964 402 21 0 0 chr6 49710997 49711044 -99805993 + (GGA)n Simple_repeat Simple_repeat 2 48 0 3 964 229 288 242 28 chr6 49711204 49711807 -99805230 - L1MEc LINE L1 -2679 3640 2909 3 964 1260 288 135 26 chr6 49712053 49713126 -99803911 - L1MC2 LINE L1 -8 6336 5150 3 964 222 287 160 0 chr6 49713258 49713352 -99803685 + B3 SINE B2 29 137 -79 3 964 1161 249 140 71 chr6 49713368 49714014 -99803023 - L1MEc LINE L1 -5201 1199 497 3 964 601 175 204 48 chr6 49714014 49714200 -99802837 - B3 SINE B2 0 216 2 3 964 1161 249 140 71 chr6 49714200 49714298 -99802739 - L1MEc LINE L1 -5904 496 404 3 964 21 0 0 0 chr6 49714334 49714355 -99802682 + AT_rich Low_complexity Low_complexity 1 21 0 3 964 306 312 134 33 chr6 49714965 49715424 -99801613 + MLT1H2 LTR MaLR 65 531 -24 3 964 315 0 0 0 chr6 49715460 49715495 -99801542 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 964 206 211 0 0 chr6 49717394 49717432 -99799605 + G-rich Low_complexity Low_complexity 1 38 0 3 964 1253 61 55 0 chr6 49717570 49717721 -99799316 + B2_Mm1a SINE B2 1 160 -33 3 964 207 0 0 0 chr6 49717721 49717744 -99799293 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 964 1253 61 55 0 chr6 49717744 49717757 -99799280 + B2_Mm1a SINE B2 161 173 -20 3 964 749 256 95 38 chr6 49718004 49718243 -99798794 + B4A SINE B4 14 273 -19 3 964 315 0 0 0 chr6 49718243 49718278 -99798759 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 964 749 256 95 38 chr6 49718278 49718302 -99798735 + B4A SINE B4 274 292 0 3 964 212 171 0 0 chr6 49718509 49718550 -99798487 + MIR SINE MIR 100 140 -68 3 964 246 305 0 87 chr6 49718857 49718972 -99798065 - HAL1b LINE L1 -667 1342 1238 3 964 182 91 30 0 chr6 49722325 49722358 -99794679 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 964 533 282 0 0 chr6 49722368 49722485 -99794552 - B1F SINE Alu -32 117 1 3 964 26 74 0 0 chr6 49724513 49724567 -99792470 + AT_rich Low_complexity Low_complexity 1 54 0 3 964 365 270 110 45 chr6 49725187 49725342 -99791695 - MER20 DNA MER1_type -24 195 31 3 964 21 36 0 0 chr6 49725672 49725700 -99791337 + AT_rich Low_complexity Low_complexity 1 28 0 3 964 1431 269 146 36 chr6 49727089 49727965 -99789072 - RCHARR1 DNA MER1_type 0 974 3 3 964 201 74 0 0 chr6 49728749 49728776 -99788261 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3 964 202 374 11 0 chr6 49728829 49728920 -99788117 - MIRb SINE MIR -31 237 146 3 964 465 103 0 0 chr6 49729077 49729145 -99787892 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 964 22 0 0 0 chr6 49730256 49730278 -99786759 + AT_rich Low_complexity Low_complexity 1 22 0 3 964 244 311 164 68 chr6 49731295 49731588 -99785449 + MamRep1161 DNA TcMar 241 561 -396 3 964 3479 80 13 2 chr6 49733707 49734171 -99782866 - Lx3_Mus LINE L1 0 7009 6541 3 964 251 235 0 0 chr6 49734769 49734820 -99782217 - B4A SINE B4 -234 58 8 3 964 1118 273 36 48 chr6 49734869 49735271 -99781766 + MTE2a LTR MaLR 8 404 -15 3 964 880 264 38 85 chr6 49735323 49735663 -99781374 + RLTR14 LTR ERV1 1 324 -58 3 964 1048 265 61 26 chr6 49735907 49736337 -99780700 - L1MA4 LINE L1 -155 5969 5522 3 964 1066 179 122 106 chr6 49736377 49736751 -99780286 - MT2A LTR ERVL -84 517 3 3 964 367 303 110 13 chr6 49736933 49737130 -99779907 + L1M5 LINE L1 5559 5763 -399 3 964 460 358 25 9 chr6 49737169 49737272 -99779765 + L1M5 LINE L1 3682 3784 -2362 3 964 1631 212 96 10 chr6 49737272 49737658 -99779379 + MTD LTR MaLR 1 419 0 3 964 460 335 120 18 chr6 49737658 49738063 -99778974 + L1M5 LINE L1 3783 4241 -1905 3 964 332 297 68 0 chr6 49738407 49738525 -99778512 + ID_B1 SINE B4 98 223 -1 3 964 609 224 55 12 chr6 49738868 49739031 -99778006 + MTD LTR MaLR 236 405 -14 3 964 510 207 44 58 chr6 49739950 49740155 -99776882 + L1M3 LINE L1 4285 4486 -1654 3 964 773 261 44 52 chr6 49740155 49740426 -99776611 + B4A SINE B4 6 274 -18 3 964 285 29 0 0 chr6 49740431 49740465 -99776572 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 964 780 290 92 39 chr6 49740473 49740782 -99776255 + L1M3 LINE L1 4473 4800 -1340 3 964 549 0 0 0 chr6 49740782 49740843 -99776194 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 3 964 780 290 92 39 chr6 49740843 49740945 -99776092 + L1M3 LINE L1 4801 4905 -1235 3 964 347 356 46 25 chr6 49742164 49742360 -99774677 - MER20 DNA MER1_type -17 202 3 3 964 339 72 35 18 chr6 49742461 49742511 -99774526 + B1_Mus2 SINE Alu 72 123 -24 3 964 295 21 20 41 chr6 49742511 49742560 -99774477 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 3 964 404 143 0 0 chr6 49742603 49742666 -99774371 + tRNA-Glu-GAG_ tRNA tRNA 13 75 0 3 964 337 169 35 46 chr6 49742726 49742813 -99774224 + RLTR17 LTR ERVK 534 619 -73 3 964 784 89 23 34 chr6 49743813 49743988 -99773049 + (CCA)n Simple_repeat Simple_repeat 1 173 0 3 964 2060 101 61 61 chr6 49745600 49745926 -99771111 - ORR1A3 LTR MaLR 0 326 1 3 964 294 202 284 0 chr6 49746742 49746851 -99770186 - ID_B1 SINE B4 -7 217 78 3 964 325 274 45 54 chr6 49747875 49747987 -99769050 + PB1D9 SINE Alu 1 111 -9 3 964 7003 70 37 7 chr6 49747987 49749671 -99767366 + L1VL2 LINE L1 92 1826 -1789 3 964 308 296 0 0 chr6 49749815 49749903 -99767134 - PB1D10 SINE Alu -2 115 28 3 964 231 36 0 0 chr6 49750553 49750581 -99766456 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 964 25 51 0 0 chr6 49750785 49750824 -99766213 + AT_rich Low_complexity Low_complexity 1 39 0 3 964 222 182 15 29 chr6 49751065 49751133 -99765904 + GA-rich Low_complexity Low_complexity 4 70 0 3 964 726 310 66 86 chr6 49751133 49751905 -99765132 + L1MD LINE L1 3253 4009 -2137 3 964 243 204 0 0 chr6 49752917 49752971 -99764066 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 964 220 310 0 0 chr6 49754538 49754596 -99762441 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 3 964 419 303 100 14 chr6 49754596 49754850 -99762187 - B4A SINE B4 0 292 13 3 964 30 45 0 0 chr6 49756413 49756457 -99760580 + AT_rich Low_complexity Low_complexity 1 44 0 3 964 425 133 0 13 chr6 49758866 49758942 -99758095 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 3 964 261 288 23 23 chr6 49759015 49759143 -99757894 + (CATA)n Simple_repeat Simple_repeat 2 129 0 3 964 304 261 11 11 chr6 49759038 49759131 -99757906 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 964 201 133 0 0 chr6 49759971 49760001 -99757036 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 3 964 532 267 31 0 chr6 49760040 49760201 -99756836 - MER90 LTR ERV1 -160 415 250 3 964 21 36 0 0 chr6 49760974 49761002 -99756035 + AT_rich Low_complexity Low_complexity 1 28 0 3 964 467 242 53 0 chr6 49761004 49761136 -99755901 - Lx7 LINE L1 0 7696 7558 3 964 180 0 0 0 chr6 49761249 49761269 -99755768 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 964 401 285 7 65 chr6 49761815 49761886 -99755151 - MLT1H1 LTR MaLR -8 547 481 3 964 1041 213 25 0 chr6 49761886 49762088 -99754949 - B3 SINE B2 -9 207 1 3 964 401 285 7 65 chr6 49762088 49762155 -99754882 - MLT1H1 LTR MaLR -75 480 417 3 964 260 269 84 79 chr6 49762758 49762948 -99754089 - ORR1E LTR MaLR -95 264 74 3 964 239 286 112 0 chr6 49763009 49763107 -99753930 - MLT2B3 LTR ERVL -445 109 1 3 964 414 57 0 0 chr6 49763262 49763315 -99753722 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 964 581 0 14 0 chr6 49763452 49763521 -99753516 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 964 253 341 0 34 chr6 49763664 49763752 -99753285 + polypyrimidine Low_complexity Low_complexity 1 85 0 3 964 285 333 80 16 chr6 49763906 49764031 -99753006 + MIRb SINE MIR 55 187 -81 3 964 324 327 93 75 chr6 49764788 49765280 -99751757 - L1M4 LINE L1 -2238 3908 3408 3 964 440 192 10 0 chr6 49765654 49765758 -99751279 + (TG)n Simple_repeat Simple_repeat 1 105 0 4 964 574 209 17 0 chr6 49768311 49768426 -99748611 + ORR1D1 LTR MaLR 1 117 -257 4 964 252 301 0 0 chr6 49768553 49768626 -99748411 - PB1D10 SINE Alu -39 78 6 4 964 240 312 25 0 chr6 49768561 49768641 -99748396 - ID_B1 SINE B4 -73 151 70 4 964 264 59 0 0 chr6 49768995 49769029 -99748008 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 4 964 611 266 176 49 chr6 49769635 49770073 -99746964 + L1MEc LINE L1 453 955 -5445 4 964 379 288 17 35 chr6 49770073 49770188 -99746849 + PB1D10 SINE Alu 3 115 -2 4 964 611 266 176 49 chr6 49770188 49770438 -99746599 + L1MEc LINE L1 956 1227 -5173 4 964 756 99 0 0 chr6 49771630 49771741 -99745296 + (TC)n Simple_repeat Simple_repeat 2 112 0 4 964 210 105 0 0 chr6 49773064 49773102 -99743935 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 4 964 297 0 0 0 chr6 49774259 49774292 -99742745 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4 964 1049 101 53 12 chr6 49775070 49775241 -99741796 - B2_Mm2 SINE B2 -15 180 3 4 964 213 170 38 0 chr6 49775255 49775308 -99741729 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 964 414 0 0 0 chr6 49775348 49775394 -99741643 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 964 236 197 73 103 chr6 49776899 49776967 -99740070 + RSINE1 SINE B4 48 113 -52 4 964 305 128 25 13 chr6 49776970 49777049 -99739988 + Lx9 LINE L1 7563 7642 -2 4 964 180 111 0 0 chr6 49777113 49777140 -99739897 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 964 349 350 16 16 chr6 49777160 49777285 -99739752 - RSINE1 SINE B4 -33 132 8 4 964 241 314 151 0 chr6 49779671 49779830 -99737207 + MER3 DNA MER1_type 15 197 -12 4 964 291 28 0 0 chr6 49780011 49780047 -99736990 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 964 764 184 0 39 chr6 49780071 49780224 -99736813 - B1_Mur4 SINE Alu 0 150 4 4 964 27 0 0 0 chr6 49780720 49780747 -99736290 + AT_rich Low_complexity Low_complexity 1 27 0 4 964 1028 253 168 9 chr6 49781636 49781963 -99735074 - MTE2a LTR MaLR 0 379 1 4 964 675 227 7 57 chr6 49783968 49784108 -99732929 - RSINE1 SINE B4 -30 135 3 4 964 355 287 28 9 chr6 49784392 49784501 -99732536 + MER81 DNA AcHobo 2 112 -2 4 964 226 294 12 12 chr6 49784979 49785065 -99731972 - MIRb SINE MIR -76 192 107 4 964 947 248 123 51 chr6 49785101 49785433 -99731604 - MTD LTR MaLR -15 404 49 4 964 297 0 0 0 chr6 49785632 49785665 -99731372 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 964 1234 295 3 0 chr6 49785701 49786013 -99731024 - Lx8 LINE L1 -121 7352 7040 4 964 723 86 26 0 chr6 49786104 49786221 -99730816 + L1_Mus3 LINE L1 6478 6597 -41 4 964 1293 35 29 0 chr6 49786222 49786393 -99730644 - MTB LTR MaLR 0 400 225 4 964 325 65 0 0 chr6 49786391 49786437 -99730600 - MT2C_Mm LTR ERVL -429 46 1 4 964 213 65 0 0 chr6 49786446 49786477 -99730560 + (A)n Simple_repeat Simple_repeat 1 31 0 4 964 25 0 0 0 chr6 49786839 49786864 -99730173 + AT_rich Low_complexity Low_complexity 1 25 0 4 964 373 322 62 8 chr6 49787039 49787283 -99729754 - L1MEe LINE L1 -4471 383 127 4 964 5415 142 38 2 chr6 49787500 49788343 -99728694 - Lx4A LINE L1 -3 7055 6183 4 964 2095 138 119 22 chr6 49788492 49788863 -99728174 + MTB_Mm LTR MaLR 1 407 0 4 964 180 0 0 0 chr6 49788969 49788989 -99728048 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 964 913 67 278 7 chr6 49789093 49789244 -99727793 - B2_Mm2 SINE B2 -2 193 2 4 964 190 333 73 52 chr6 49789694 49789830 -99727207 + MIRb SINE MIR 100 238 -30 4 964 876 309 51 0 chr6 49790596 49790852 -99726185 - B4A SINE B4 -16 276 8 4 964 2004 168 56 73 chr6 49791298 49791762 -99725275 + RLTR25A LTR ERVK 65 520 -583 4 964 755 181 236 0 chr6 49791723 49791939 -99725098 + ORR1A3-int LTR MaLR 534 800 -1163 4 964 953 137 223 73 chr6 49791793 49792013 -99725024 + MT2B LTR ERVL 35 287 -314 4 964 1048 170 4 12 chr6 49791972 49792222 -99724815 + ORR1A3-int LTR MaLR 718 965 -998 4 964 553 164 136 98 chr6 49792197 49792493 -99724544 + RLTR25A LTR ERVK 620 1028 0 4 964 207 186 0 0 chr6 49793596 49793639 -99723398 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 964 200 111 28 0 chr6 49793642 49793678 -99723359 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 964 565 286 145 4 chr6 49793878 49794120 -99722917 - ORR1D2 LTR MaLR -2 368 93 4 964 4156 209 117 6 chr6 49794159 49794953 -99722084 - ORR1D2-int LTR MaLR -59 1311 412 4 964 360 0 0 0 chr6 49794953 49794993 -99722044 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 964 315 0 0 0 chr6 49794993 49795027 -99722010 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 964 4156 209 117 6 chr6 49795027 49795228 -99721809 - ORR1D2-int LTR MaLR -959 411 206 4 964 456 319 31 0 chr6 49796049 49796212 -99720825 - MER58A DNA MER1_type -12 212 45 4 964 233 217 127 28 chr6 49796628 49796699 -99720338 + MTEa LTR MaLR 302 379 0 4 964 507 205 98 166 chr6 49797779 49797984 -99719053 + B3A SINE B2 1 191 -7 4 964 187 194 159 29 chr6 49798508 49798577 -99718460 + L2c LINE L2 3083 3160 -227 4 964 207 69 0 0 chr6 49799107 49799136 -99717901 + (CCA)n Simple_repeat Simple_repeat 1 29 0 4 964 268 295 74 0 chr6 49799509 49799604 -99717433 - MER5A1 DNA MER1_type -60 106 5 4 964 189 226 0 5 chr6 49800265 49800320 -99716717 + MIR SINE MIR 39 92 -116 4 964 509 300 60 0 chr6 49800473 49800623 -99716414 + RSINE1 SINE B4 3 161 -4 4 964 688 258 69 7 chr6 49801048 49801241 -99715796 + B3A SINE B2 1 204 -12 4 964 254 329 51 0 chr6 49801707 49801786 -99715251 + B1F SINE Alu 56 138 -11 4 964 558 0 0 0 chr6 49801794 49801856 -99715181 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 964 213 39 0 0 chr6 49802483 49802509 -99714528 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 964 321 26 0 0 chr6 49802509 49802546 -99714491 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 964 393 47 47 0 chr6 49804139 49804203 -99712834 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 964 310 247 0 58 chr6 49804382 49804468 -99712569 - PB1D10 SINE Alu -34 83 3 4 964 588 206 14 42 chr6 49804468 49804538 -99712499 - ID SINE ID -141 83 18 4 964 336 232 0 0 chr6 49804564 49804663 -99712374 + (CA)n Simple_repeat Simple_repeat 2 100 0 4 964 395 0 0 0 chr6 49804712 49804759 -99712278 + ORR1A3 LTR MaLR 280 326 0 4 964 212 247 0 12 chr6 49805737 49805823 -99711214 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 964 254 155 241 0 chr6 49805823 49805881 -99711156 - ID2 SINE ID -11 72 1 4 964 21 0 0 0 chr6 49805968 49805989 -99711048 + AT_rich Low_complexity Low_complexity 1 21 0 4 964 4720 133 35 5 chr6 49806009 49806752 -99710285 + Lx LINE L1 5889 6653 -1 4 965 25 31 0 0 chr6 49807918 49807950 -99709087 + AT_rich Low_complexity Low_complexity 1 32 0 4 965 260 108 0 97 chr6 49808231 49808344 -99708693 + G-rich Low_complexity Low_complexity 4 105 0 4 965 448 211 0 78 chr6 49808760 49808940 -99708097 + C-rich Low_complexity Low_complexity 2 167 0 4 965 1138 216 54 121 chr6 49809473 49809636 -99707401 + ORR1C1 LTR MaLR 2 164 -214 4 965 465 19 0 0 chr6 49809636 49809690 -99707347 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 965 1138 216 54 121 chr6 49809690 49809707 -99707330 + ORR1C1 LTR MaLR 165 165 -213 4 965 5367 71 13 0 chr6 49809707 49810397 -99706640 - L1_Mus1 LINE L1 0 6567 5869 4 965 1138 216 54 121 chr6 49810397 49810604 -99706433 + ORR1C1 LTR MaLR 165 364 -14 4 965 413 229 36 54 chr6 49810707 49810818 -99706219 + B3 SINE B2 108 216 0 4 965 408 269 76 0 chr6 49810967 49811086 -99705951 + Lx9 LINE L1 6881 7008 -636 4 965 850 305 95 30 chr6 49811132 49811656 -99705381 + Lx9 LINE L1 7086 7643 -1 4 965 739 212 101 98 chr6 49811860 49812147 -99704890 - RLTR20C LTR ERVK -244 290 3 4 965 1367 174 29 26 chr6 49812556 49812828 -99704209 - ORR1B2 LTR MaLR 0 367 95 4 965 981 58 0 0 chr6 49812840 49812977 -99704060 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 4 965 1099 200 24 65 chr6 49813062 49813356 -99703681 + MTD LTR MaLR 1 282 -137 4 965 2430 148 26 17 chr6 49813354 49813815 -99703222 - MT2B LTR ERVL -82 519 7 4 965 432 0 0 0 chr6 49813828 49813876 -99703161 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 965 953 282 122 12 chr6 49813965 49814225 -99702812 - L1MA5 LINE L1 -218 6082 5784 4 965 216 111 0 0 chr6 49814225 49814261 -99702776 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 965 953 282 122 12 chr6 49814261 49814409 -99702628 - L1MA5 LINE L1 -517 5783 5630 4 965 569 317 5 0 chr6 49814414 49814600 -99702437 - L3 LINE CR1 -747 3742 3556 4 965 22 0 0 0 chr6 49816782 49816804 -99700233 + AT_rich Low_complexity Low_complexity 1 22 0 4 965 218 340 20 10 chr6 49816963 49817064 -99699973 - MIR SINE MIR -72 190 89 4 965 199 256 0 0 chr6 49817974 49818017 -99699020 - L3b LINE CR1 -15 467 425 4 965 260 345 32 58 chr6 49818258 49818412 -99698625 + MER58A DNA MER1_type 62 211 -13 4 965 735 323 35 62 chr6 49818923 49819458 -99697579 - Lx9 LINE L1 -117 7527 7007 4 965 189 0 0 0 chr6 49819986 49820007 -99697030 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 965 645 66 0 0 chr6 49820007 49820097 -99696940 + (TG)n Simple_repeat Simple_repeat 2 92 0 4 965 1429 163 50 212 chr6 49820243 49820447 -99696590 - ORR1C2 LTR MaLR 0 384 186 4 965 1020 106 0 0 chr6 49820447 49820626 -99696411 + (GA)n Simple_repeat Simple_repeat 2 180 0 4 965 1429 163 50 212 chr6 49820626 49820879 -99696158 - ORR1C2 LTR MaLR -199 185 1 4 965 859 236 40 10 chr6 49820927 49821128 -99695909 - B3 SINE B2 -8 208 2 4 965 269 301 14 0 chr6 49822364 49822437 -99694600 + MTEb LTR MaLR 7 80 -279 4 965 271 244 151 0 chr6 49822573 49822659 -99694378 + MTEb LTR MaLR 278 376 -3 4 965 1215 48 6 12 chr6 49822851 49823020 -99694017 + (GAA)n Simple_repeat Simple_repeat 3 170 0 4 965 754 237 175 43 chr6 49826730 49827079 -99689958 - MTD LTR MaLR 0 379 19 4 965 438 36 0 0 chr6 49827252 49827308 -99689729 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 965 195 291 131 41 chr6 49827344 49827466 -99689571 + L2a LINE L2 2960 3092 -334 5 965 363 325 31 6 chr6 49828263 49828424 -99688613 - L2 LINE L2 -556 2863 2699 5 965 254 115 19 0 chr6 49828755 49828807 -99688230 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 965 407 292 44 18 chr6 49828851 49829044 -99687993 - B4A SINE B4 -55 237 1 5 965 209 188 60 45 chr6 49829365 49829432 -99687605 + L2 LINE L2 2429 2496 -923 5 965 423 286 85 28 chr6 49829829 49830041 -99686996 + L2b LINE L2 2233 2456 -963 5 965 191 365 44 62 chr6 49830782 49831007 -99686030 + L2b LINE L2 3060 3280 -95 5 965 4388 103 100 7 chr6 49831008 49831700 -99685337 + RMER6A LTR ERVK 1 756 0 5 965 403 230 190 0 chr6 49831843 49831943 -99685094 - RSINE1 SINE B4 -29 136 18 5 965 595 306 113 17 chr6 49832458 49832751 -99684286 - MLT1B LTR MaLR -30 360 40 5 965 283 374 14 42 chr6 49833242 49833457 -99683580 - L1M5 LINE L1 -2330 3816 3608 5 965 599 254 47 96 chr6 49833554 49833876 -99683161 + RMER10A LTR ERVL 124 429 -13 5 965 225 0 0 0 chr6 49834207 49834232 -99682805 + (A)n Simple_repeat Simple_repeat 1 25 0 5 965 654 194 207 28 chr6 49834724 49834941 -99682096 - Lx8 LINE L1 -4 7469 7214 5 965 447 279 40 61 chr6 49834957 49835155 -99681882 - Lx8 LINE L1 -375 7098 6905 5 965 8645 22 0 0 chr6 49835161 49836756 -99680281 - L1Md_T LINE L1 -1 6581 4987 5 965 40023 25 10 6 chr6 49836755 49842851 -99674186 - L1Md_T LINE L1 0 6582 468 5 965 2194 260 83 5 chr6 49842861 49843417 -99673620 - Lx8 LINE L1 -580 6893 6295 5 965 326 354 85 3 chr6 49844543 49844838 -99672199 - LTR86C LTR ERVL -7 614 296 5 965 417 257 55 44 chr6 49845571 49845754 -99671283 + RMER16-int LTR ERVK 182 366 -6878 5 965 378 0 0 0 chr6 49845899 49845941 -99671096 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 965 1162 148 79 5 chr6 49845942 49846145 -99670892 + RMER16-int LTR ERVK 262 479 -4927 5 965 216 200 0 0 chr6 49846303 49846348 -99670689 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 5 965 468 0 0 0 chr6 49846388 49846440 -99670597 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 5 965 435 284 33 20 chr6 49846511 49846662 -99670375 + MTEa LTR MaLR 142 294 -85 5 965 665 34 11 0 chr6 49846768 49846856 -99670181 + (TTGG)n Simple_repeat Simple_repeat 2 90 0 5 965 651 181 71 14 chr6 49846858 49846998 -99670039 - B1_Mur4 SINE Alu 0 150 3 5 965 1716 230 31 27 chr6 49847014 49847493 -99669544 + RLTR11A2 LTR ERVK 8 488 -39 5 965 279 0 0 0 chr6 49847732 49847763 -99669274 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 965 441 0 0 0 chr6 49848013 49848062 -99668975 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 965 360 0 0 0 chr6 49848062 49848101 -99668936 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 965 351 0 0 0 chr6 49848353 49848392 -99668645 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 965 201 39 0 0 chr6 49848688 49848714 -99668323 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 5 965 305 370 8 0 chr6 49848746 49848865 -99668172 + L1M5 LINE L1 4981 5100 -1046 5 965 1170 145 4 117 chr6 49849571 49849820 -99667217 + RMER19B LTR ERVK 1 221 -681 5 965 1365 199 95 30 chr6 49849847 49850292 -99666745 + RMER19B LTR ERVK 147 675 -227 5 965 203 0 37 0 chr6 49850918 49850945 -99666092 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 5 965 760 189 90 11 chr6 49851186 49851363 -99665674 + Lx5 LINE L1 6858 7048 -2 5 965 894 164 0 0 chr6 49851394 49851559 -99665478 + GA-rich Low_complexity Low_complexity 1 165 0 5 965 447 19 0 0 chr6 49852503 49852555 -99664482 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 965 207 250 0 0 chr6 49852591 49852643 -99664394 + CT-rich Low_complexity Low_complexity 1 52 0 5 965 235 310 0 0 chr6 49853039 49853126 -99663911 - L1MEc LINE L1 -6203 197 111 5 965 551 221 61 8 chr6 49853881 49854013 -99663024 - RSINE1 SINE B4 -25 140 2 5 965 270 0 0 0 chr6 49854998 49855028 -99662009 + (T)n Simple_repeat Simple_repeat 1 30 0 5 965 497 271 43 108 chr6 49856012 49856051 -99660986 + B4 SINE B4 53 225 -66 5 965 1067 89 0 0 chr6 49856051 49856197 -99660840 + B1_Mus1 SINE Alu 2 147 -1 5 965 207 274 0 0 chr6 49856207 49856258 -99660779 + GA-rich Low_complexity Low_complexity 2 52 0 5 965 462 367 112 36 chr6 49856350 49856850 -99660187 - L2 LINE L2 -385 3034 2497 5 965 795 265 107 8 chr6 49856858 49857120 -99659917 + MLT1C LTR MaLR 19 306 -161 5 965 392 315 165 62 chr6 49857363 49857613 -99659424 - L2 LINE L2 -1138 2281 1992 5 965 3279 128 63 20 chr6 49857613 49858172 -99658865 - RMER4B LTR ERVK 0 585 3 5 965 392 315 165 62 chr6 49858172 49858721 -99658316 - L2 LINE L2 -1428 1991 1400 5 965 448 278 20 13 chr6 49859221 49859374 -99657663 + MLT2B4 LTR ERVL 16 169 -387 5 965 2451 106 60 3 chr6 49859768 49860136 -99656901 + ORR1B1 LTR MaLR 5 393 -1 5 965 274 252 182 16 chr6 49860410 49860531 -99656506 + MER58A DNA MER1_type 72 212 -12 5 965 667 311 115 78 chr6 49862651 49863112 -99653925 + MLT1G3 LTR MaLR 41 518 -77 5 965 438 279 126 31 chr6 49864055 49864277 -99652760 + RMER15 LTR ERVL 309 551 -24 5 965 987 56 0 0 chr6 49865325 49865451 -99651586 + (TC)n Simple_repeat Simple_repeat 1 126 0 5 965 351 0 0 0 chr6 49865451 49865489 -99651548 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 965 434 359 43 48 chr6 49865551 49865926 -99651111 + MLT1A LTR MaLR 1 373 -1 5 965 456 259 0 0 chr6 49865948 49866083 -99650954 + A-rich Low_complexity Low_complexity 1 135 0 5 965 229 309 36 0 chr6 49866884 49866968 -99650069 - ORR1E LTR MaLR -5 354 268 5 965 251 330 67 19 chr6 49866947 49867052 -99649985 - MER5A1 DNA MER1_type -56 110 1 5 965 654 13 0 0 chr6 49867124 49867199 -99649838 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 965 344 325 86 98 chr6 49867233 49867489 -99649548 - LTR48B LTR ERV1 -11 633 381 5 965 627 71 0 0 chr6 49868013 49868098 -99648939 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 5 965 198 224 0 0 chr6 49868102 49868151 -99648886 + GA-rich Low_complexity Low_complexity 1 49 0 5 965 348 242 77 45 chr6 49868517 49868673 -99648364 - MER33 DNA MER1_type -121 203 43 5 965 308 279 45 9 chr6 49868673 49868785 -99648252 + MER5A DNA MER1_type 74 189 0 5 965 804 74 0 0 chr6 49869750 49869858 -99647179 + (GGAA)n Simple_repeat Simple_repeat 3 110 0 5 965 504 299 14 7 chr6 49870645 49870783 -99646254 + Ricksha_c DNA MuDR 645 783 -1265 5 965 378 0 0 0 chr6 49870862 49870904 -99646133 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 965 444 62 0 0 chr6 49871393 49871457 -99645580 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 965 405 0 0 0 chr6 49871457 49871502 -99645535 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 965 528 274 55 17 chr6 49871786 49872024 -99645013 - L1MC4a LINE L1 -2 7880 7634 5 965 394 228 330 14 chr6 49872077 49872286 -99644751 - L1MC4a LINE L1 -346 7649 7375 5 965 339 286 164 15 chr6 49872447 49872710 -99644327 - L1MCc LINE L1 -6105 318 17 5 965 209 290 139 9 chr6 49873409 49873517 -99643520 - MIRc SINE MIR -130 138 17 5 965 293 289 484 15 chr6 49874924 49875122 -99641915 + B4A SINE B4 2 292 0 5 965 319 322 212 25 chr6 49875485 49876042 -99640995 + L2 LINE L2 679 1339 -2080 5 965 258 293 131 92 chr6 49876074 49876303 -99640734 + B4A SINE B4 55 292 0 5 965 1472 172 155 3 chr6 49876356 49876660 -99640377 - ORR1B2 LTR MaLR -12 355 6 5 965 320 305 159 39 chr6 49876680 49877089 -99639948 + L2 LINE L2 2001 2458 -961 5 965 204 40 0 0 chr6 49877109 49877134 -99639903 + (CAT)n Simple_repeat Simple_repeat 2 26 0 5 965 287 264 269 22 chr6 49877428 49877610 -99639427 + L1MC1 LINE L1 5031 5257 -889 5 965 438 258 260 14 chr6 49877758 49878040 -99638997 + L1MC1 LINE L1 5254 5605 -739 5 965 1438 285 65 14 chr6 49878046 49878616 -99638421 + L1MC1 LINE L1 5729 6327 -6 5 965 522 161 0 0 chr6 49878664 49878757 -99638280 + CT-rich Low_complexity Low_complexity 1 93 0 5 965 232 227 0 0 chr6 49878841 49878885 -99638152 + MLT1F1 LTR MaLR 200 243 -305 5 965 280 293 39 47 chr6 49878939 49879068 -99637969 + MLT1F1 LTR MaLR 442 569 0 5 965 230 189 0 36 chr6 49879496 49879551 -99637486 - MLT1L LTR MaLR -367 243 191 5 965 437 40 13 38 chr6 49879587 49879666 -99637371 + (CCCCCA)n Simple_repeat Simple_repeat 2 78 0 5 965 234 0 0 0 chr6 49881837 49881863 -99635174 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 965 1191 68 0 0 chr6 49881863 49882024 -99635013 - B2_Mm2 SINE B2 -34 161 1 5 965 398 257 91 9 chr6 49882058 49882168 -99634869 + PB1D7 SINE Alu 1 119 -1 5 965 5191 174 18 48 chr6 49882221 49883277 -99633760 + Lx9 LINE L1 6618 7641 -3 5 965 32 57 0 0 chr6 49883279 49883332 -99633705 + AT_rich Low_complexity Low_complexity 1 53 0 5 965 258 32 0 0 chr6 49883414 49883445 -99633592 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 5 965 330 200 23 12 chr6 49883582 49883668 -99633369 - L1MA6 LINE L1 -6 6294 6208 5 965 428 161 0 51 chr6 49883695 49883813 -99633224 + (TTA)n Simple_repeat Simple_repeat 3 114 0 5 965 249 128 0 0 chr6 49884171 49884218 -99632819 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 965 456 62 0 0 chr6 49884219 49884283 -99632754 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 965 589 93 92 8 chr6 49884584 49884714 -99632323 + GA-rich Low_complexity Low_complexity 5 145 0 5 965 206 30 0 83 chr6 49885428 49885464 -99631573 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 965 438 20 0 0 chr6 49886175 49886226 -99630811 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 965 228 286 0 0 chr6 49886263 49886326 -99630711 - B4A SINE B4 -50 242 180 5 965 426 20 0 0 chr6 49886508 49886559 -99630478 + (TTG)n Simple_repeat Simple_repeat 2 52 0 5 965 732 168 75 15 chr6 49886559 49886692 -99630345 - B1_Mur1 SINE Alu -8 141 1 5 965 441 0 0 0 chr6 49889985 49890034 -99627003 + (CAG)n Simple_repeat Simple_repeat 2 50 0 5 965 430 213 58 73 chr6 49890092 49890229 -99626808 - MLT1A1 LTR MaLR -6 402 268 5 965 464 236 31 0 chr6 49890557 49890684 -99626353 - MER5A1 DNA MER1_type -18 148 18 5 965 357 272 102 115 chr6 49890853 49891148 -99625889 + B4 SINE B4 2 292 0 5 965 192 77 0 0 chr6 49891153 49891179 -99625858 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 965 290 215 13 0 chr6 49891191 49891270 -99625767 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 965 215 188 42 0 chr6 49891281 49891329 -99625708 + (CATA)n Simple_repeat Simple_repeat 1 50 0 6 965 306 178 11 22 chr6 49891376 49891468 -99625569 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 965 260 216 19 56 chr6 49891482 49891590 -99625447 + (CATA)n Simple_repeat Simple_repeat 1 104 0 6 965 510 243 117 36 chr6 49892018 49892200 -99624837 - B3 SINE B2 -1 215 1 6 965 574 246 205 0 chr6 49893399 49893614 -99623423 + L1MC3 LINE L1 7299 7557 -228 6 965 245 303 70 52 chr6 49894583 49894698 -99622339 + B1F SINE Alu 1 117 0 6 965 576 239 275 35 chr6 49895151 49895467 -99621570 + Lx8 LINE L1 6883 7274 -199 6 965 907 158 132 44 chr6 49896026 49896231 -99620806 + URR1A DNA MER1_type 3 225 -1 6 965 216 105 53 0 chr6 49896959 49896997 -99620040 + GA-rich Low_complexity Low_complexity 3 42 0 6 965 344 217 69 58 chr6 49897908 49898055 -99618982 - MLT1J LTR MaLR -334 178 53 6 965 1912 159 17 11 chr6 49900489 49900839 -99616198 - Lx LINE L1 -15 6639 6288 6 965 295 213 0 141 chr6 49901138 49901280 -99615757 + Lx9 LINE L1 6156 6277 -1367 6 965 2150 233 71 23 chr6 49901307 49901926 -99615111 + Lx9 LINE L1 6868 7516 -128 6 965 876 210 0 3 chr6 49901926 49902321 -99614716 + (TATG)n Simple_repeat Simple_repeat 1 393 0 6 965 226 50 24 24 chr6 49902482 49902523 -99614514 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 6 965 2288 204 28 76 chr6 49904797 49905374 -99611663 + RMER15 LTR ERVL 27 575 0 6 965 877 171 25 6 chr6 49905395 49905554 -99611483 + ORR1B2 LTR MaLR 9 170 -197 6 965 251 122 20 0 chr6 49905554 49905603 -99611434 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 965 387 119 0 0 chr6 49905607 49905674 -99611363 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 965 1097 175 5 0 chr6 49905694 49905888 -99611149 + ORR1B2 LTR MaLR 173 367 0 6 965 762 40 0 0 chr6 49908006 49908107 -99608930 - B1_Mm SINE Alu -24 123 23 6 965 222 118 0 0 chr6 49908408 49908442 -99608595 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 965 294 164 0 0 chr6 49909188 49909243 -99607794 + CT-rich Low_complexity Low_complexity 1 55 0 6 965 336 232 0 28 chr6 49909244 49909315 -99607722 - ID4 SINE ID -13 70 2 6 965 1162 54 0 0 chr6 49909350 49909497 -99607540 - B1_Mm SINE Alu 0 147 1 6 965 299 253 9 79 chr6 49909501 49909635 -99607402 - B1F SINE Alu 0 150 33 6 965 225 94 0 0 chr6 49911661 49911693 -99605344 + (T)n Simple_repeat Simple_repeat 1 32 0 6 965 333 309 37 9 chr6 49911804 49911912 -99605125 + B1F SINE Alu 3 113 -36 6 965 207 0 0 0 chr6 49911928 49911951 -99605086 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 6 965 246 246 126 42 chr6 49912054 49912118 -99604919 + Charlie4z DNA MER1_type 39 110 -57 6 965 225 0 0 0 chr6 49912118 49912143 -99604894 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 965 246 246 126 42 chr6 49912143 49912197 -99604840 + Charlie4z DNA MER1_type 111 166 -1 6 965 1027 265 19 19 chr6 49912999 49913268 -99603769 - B4A SINE B4 0 292 24 6 965 495 90 0 0 chr6 49914142 49914220 -99602817 + (GA)n Simple_repeat Simple_repeat 1 78 0 6 965 930 115 0 0 chr6 49914438 49914577 -99602460 + B2_Mm2 SINE B2 1 139 -56 6 965 296 154 14 0 chr6 49914615 49914680 -99602357 + B2_Mm2 SINE B2 46 116 -82 6 965 348 298 34 96 chr6 49914737 49914915 -99602122 + MLT2D LTR ERVL 63 229 -327 6 965 201 247 31 0 chr6 49914968 49915065 -99601972 + CT-rich Low_complexity Low_complexity 2 101 0 6 965 489 34 0 0 chr6 49915257 49915316 -99601721 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 6 965 1072 43 0 0 chr6 49915318 49915457 -99601580 - B1_Mus2 SINE Alu 0 147 9 6 965 367 174 22 34 chr6 49915460 49915549 -99601488 + ID_B1 SINE B4 132 219 -5 6 965 236 313 15 0 chr6 49915565 49915632 -99601405 + ID4 SINE ID 5 72 -11 6 965 306 335 104 48 chr6 49915643 49916028 -99601009 + MLT1H LTR MaLR 68 482 -7 6 965 420 340 103 20 chr6 49917286 49917481 -99599556 - MER58A DNA MER1_type -13 211 1 6 965 183 42 0 0 chr6 49917539 49917563 -99599474 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 965 332 342 97 35 chr6 49917635 49917923 -99599114 + MLT1H1 LTR MaLR 170 475 -80 6 965 335 278 65 0 chr6 49918857 49918965 -99598072 + Kanga2_a DNA Tc2 82 196 -692 6 965 625 253 54 84 chr6 49919820 49920023 -99597014 + B3A SINE B2 1 197 -1 6 965 975 205 64 4 chr6 49920039 49920274 -99596763 - Lx9 LINE L1 -7 7637 7389 6 965 7827 49 20 10 chr6 49920297 49921162 -99595875 - L1Md_F2 LINE L1 -19 6563 5689 6 965 2413 60 119 11 chr6 49921162 49921514 -99595523 + RLTR10 LTR ERVK 1 390 0 6 965 7827 59 11 9 chr6 49921514 49922105 -99594932 - L1Md_F2 LINE L1 -195 5688 5092 6 965 240 300 14 0 chr6 49922755 49922825 -99594212 + tRNA-Ala-GCY_ tRNA tRNA 1 71 -4 6 965 262 242 0 15 chr6 49923709 49923776 -99593261 - MTEa LTR MaLR 0 379 314 6 965 1203 60 19 29 chr6 49923777 49924261 -99592776 + (TG)n Simple_repeat Simple_repeat 1 478 0 6 965 560 248 106 0 chr6 49924352 49924513 -99592524 - MTEa LTR MaLR -201 178 1 6 965 842 317 92 26 chr6 49924615 49925114 -99591923 + MLT1H LTR MaLR 18 549 0 6 965 369 0 0 0 chr6 49925343 49925384 -99591653 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 965 613 306 26 5 chr6 49926222 49926416 -99590621 - B3A SINE B2 0 198 1 6 965 360 0 0 0 chr6 49926744 49926784 -99590253 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 965 195 220 0 0 chr6 49927057 49927107 -99589930 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 965 279 0 0 0 chr6 49927146 49927177 -99589860 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 965 195 100 0 0 chr6 49927177 49927206 -99589831 + (CG)n Simple_repeat Simple_repeat 2 31 0 6 965 21 36 0 0 chr6 49930481 49930509 -99586528 + AT_rich Low_complexity Low_complexity 1 28 0 6 965 450 340 110 27 chr6 49930637 49931009 -99586028 - MLT1C LTR MaLR 0 467 65 6 965 250 200 0 22 chr6 49931209 49931255 -99585782 + MLT1E2 LTR MaLR 422 466 -161 6 965 1173 249 100 9 chr6 49931360 49931701 -99585336 + MTE2b LTR MaLR 1 372 -7 6 965 210 360 0 13 chr6 49932264 49932340 -99584697 - MIR SINE MIR -187 75 1 6 965 1198 258 72 59 chr6 49932842 49933352 -99583685 - L1_Rod LINE L1 -26 5821 5305 6 965 830 311 47 14 chr6 49933359 49933636 -99583401 - ORR1E LTR MaLR -16 343 58 6 965 579 290 52 34 chr6 49933753 49934081 -99582956 - L1M2 LINE L1 -819 5324 4991 6 965 607 288 20 4 chr6 49934064 49934308 -99582729 - L1M2 LINE L1 -1322 4821 4574 6 965 273 182 0 0 chr6 49934676 49934731 -99582306 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 965 334 317 108 18 chr6 49935107 49935274 -99581763 + MIRc SINE MIR 42 223 -45 6 965 419 272 0 0 chr6 49935609 49935712 -99581325 + PB1D10 SINE Alu 1 103 -14 6 965 253 272 122 0 chr6 49935792 49935939 -99581098 - L1MD1 LINE L1 -88 6545 6381 6 965 601 242 102 48 chr6 49935940 49936320 -99580717 - L1MD1 LINE L1 -593 5977 5589 6 965 390 283 174 22 chr6 49936342 49936653 -99580384 - L1MD1 LINE L1 -4719 1914 1557 6 965 1423 308 113 40 chr6 49936902 49937122 -99579915 - L1MD1 LINE L1 -5073 1560 1301 6 965 414 39 0 0 chr6 49937122 49937174 -99579863 + (ATG)n Simple_repeat Simple_repeat 2 53 0 6 965 276 30 0 0 chr6 49937174 49937206 -99579831 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 965 442 290 19 0 chr6 49937206 49937313 -99579724 - PB1D7 SINE Alu -11 109 1 6 965 1423 313 107 46 chr6 49937313 49938170 -99578867 - L1MD1 LINE L1 -5333 1300 341 6 965 313 241 121 50 chr6 49938161 49938301 -99578736 - L1MD1 LINE L1 -6453 180 31 6 966 269 332 45 59 chr6 49938699 49938920 -99578117 - MLT1H LTR MaLR -260 289 72 6 966 236 229 44 88 chr6 49939481 49939572 -99577465 - MTEa LTR MaLR 0 379 293 6 966 5640 79 8 1 chr6 49941044 49941789 -99575248 - L1_Mus3 LINE L1 -2 6636 5887 6 966 25 0 0 0 chr6 49942667 49942692 -99574345 + AT_rich Low_complexity Low_complexity 1 25 0 6 966 2324 192 13 60 chr6 49943884 49944301 -99572736 + MT2A LTR ERVL 5 425 -108 6 966 3550 18 2 0 chr6 49944301 49944696 -99572341 + MTA_Mm LTR MaLR 1 396 0 6 966 9081 40 6 1 chr6 49944696 49945789 -99571248 + MTA_Mm-int LTR MaLR 1 1098 0 6 966 3550 18 2 0 chr6 49945789 49946184 -99570853 + MTA_Mm LTR MaLR 1 396 0 6 966 2324 192 13 60 chr6 49946184 49946244 -99570793 + MT2A LTR ERVL 426 475 -58 6 966 1170 61 0 0 chr6 49946244 49946391 -99570646 + B1_Mus2 SINE Alu 1 147 0 6 966 2324 192 13 60 chr6 49946391 49946465 -99570572 + MT2A LTR ERVL 476 530 -3 6 966 327 235 60 2 chr6 49947044 49947156 -99569881 - MLT1F1 LTR MaLR -343 236 77 6 966 184 246 158 0 chr6 49947358 49947415 -99569622 - MIRc SINE MIR -113 155 90 6 966 428 327 135 67 chr6 49949832 49950173 -99566864 - MLT1A0 LTR MaLR 0 365 2 6 966 241 200 0 0 chr6 49950326 49950371 -99566666 + ID SINE ID 2 46 -178 6 966 418 256 136 0 chr6 49951259 49951384 -99565653 - B1F SINE Alu -6 143 2 6 966 793 266 28 5 chr6 49951551 49951766 -99565271 + ID_B1 SINE B4 1 220 -4 6 966 432 86 0 0 chr6 49951819 49951889 -99565148 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 6 966 1122 30 0 0 chr6 49952113 49952247 -99564790 + (GGGAGA)n Simple_repeat Simple_repeat 3 136 0 6 966 204 333 0 0 chr6 49952252 49952312 -99564725 - MER5A DNA MER1_type -126 63 4 6 966 202 339 59 25 chr6 49952372 49952490 -99564547 - MIRb SINE MIR -38 230 109 6 966 212 114 0 0 chr6 49952552 49952587 -99564450 + L2a LINE L2 1492 1526 -1893 6 966 702 265 146 10 chr6 49952655 49952961 -99564076 - MLT1F LTR MaLR -15 533 188 6 966 646 320 211 30 chr6 49953114 49953968 -99563069 + L2a LINE L2 1689 2696 -723 6 966 324 250 68 43 chr6 49953959 49954122 -99562915 + L2a LINE L2 3113 3279 -147 6 966 302 240 47 57 chr6 49954404 49954510 -99562527 + ORR1E LTR MaLR 93 197 -162 6 966 1290 297 20 3 chr6 49954651 49955006 -99562031 - Lx8 LINE L1 -791 6682 6322 6 966 264 339 133 0 chr6 49955270 49955503 -99561534 - L2 LINE L2 -982 2437 2174 6 966 228 344 66 0 chr6 49955563 49955714 -99561323 + MIR SINE MIR 98 258 -4 6 966 441 0 0 0 chr6 49956060 49956109 -99560928 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 966 231 370 18 18 chr6 49957752 49957862 -99559175 - MIR SINE MIR -126 136 27 6 966 420 339 30 12 chr6 49958364 49958531 -99558506 - MER5B DNA MER1_type -8 170 1 7 966 239 160 13 0 chr6 49960419 49960494 -99556543 + T-rich Low_complexity Low_complexity 2 77 0 7 966 1236 232 132 6 chr6 49960500 49960856 -99556181 + MTD LTR MaLR 1 401 -18 7 966 212 296 123 75 chr6 49961987 49962335 -99554702 + L2c LINE L2 3020 3357 -18 7 966 349 279 0 0 chr6 49962345 49962424 -99554613 - MADE2 DNA Mariner 0 80 2 7 966 21 0 0 0 chr6 49964525 49964546 -99552491 + AT_rich Low_complexity Low_complexity 1 21 0 7 966 265 311 0 0 chr6 49965357 49965431 -99551606 + ORR1E LTR MaLR 1 74 -296 7 966 734 256 91 77 chr6 49965459 49965756 -99551281 + ORR1E LTR MaLR 51 351 -8 7 966 547 331 75 58 chr6 49966385 49966705 -99550332 + HAL1 LINE L1 1706 2034 -473 7 966 279 0 0 0 chr6 49966705 49966736 -99550301 + (TA)n Simple_repeat Simple_repeat 1 31 0 7 966 547 331 75 58 chr6 49966736 49966985 -99550052 + HAL1 LINE L1 2035 2285 -222 7 966 1028 275 43 11 chr6 49966985 49967264 -99549773 + B4 SINE B4 4 291 -1 7 966 994 121 6 6 chr6 49967310 49967477 -99549560 + (GGGA)n Simple_repeat Simple_repeat 2 168 0 7 966 730 225 18 37 chr6 49967645 49967854 -99549183 + B3A SINE B2 1 210 -6 7 966 1598 42 5 0 chr6 49968304 49968495 -99548542 + B2_Mm1t SINE B2 2 193 0 7 966 403 139 12 71 chr6 49968521 49968606 -99548431 + L1_Mur3 LINE L1 3836 3915 -1965 7 966 2974 121 65 47 chr6 49968616 49969190 -99547847 - RLTR6_Mm LTR ERV1 -70 584 1 7 966 5504 137 13 35 chr6 49969191 49969796 -99547241 + L1_Mur3 LINE L1 3923 4531 -1349 7 966 2320 98 0 58 chr6 49969796 49970143 -99546894 + ORR1A4 LTR MaLR 3 329 0 7 966 5504 137 13 35 chr6 49970143 49970418 -99546619 + L1_Mur3 LINE L1 4532 4787 -1093 7 966 1095 45 15 0 chr6 49970418 49970551 -99546486 + B1_Mus2 SINE Alu 1 135 -12 7 966 447 19 0 0 chr6 49970551 49970603 -99546434 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 966 5504 137 13 35 chr6 49970603 49970697 -99546340 + L1_Mur3 LINE L1 4788 4877 -1003 7 966 1367 191 48 31 chr6 49970736 49971028 -99546009 + Lx7 LINE L1 7399 7695 -1 7 966 1342 179 4 4 chr6 49971060 49971285 -99545752 - URR1B DNA MER1_type 0 225 1 7 966 238 302 82 36 chr6 49971519 49971629 -99545408 + L2c LINE L2 3266 3380 -7 7 966 319 191 0 128 chr6 49972769 49972871 -99544166 + B1F SINE Alu 1 110 -39 7 966 236 354 0 0 chr6 49972895 49972977 -99544060 + ID2 SINE ID 2 83 0 7 966 22 0 0 0 chr6 49973420 49973442 -99543595 + AT_rich Low_complexity Low_complexity 1 22 0 7 966 790 233 15 31 chr6 49973450 49973645 -99543392 + B3A SINE B2 7 198 0 7 966 343 220 18 18 chr6 49974017 49974128 -99542909 + GA-rich Low_complexity Low_complexity 3 113 0 7 966 225 304 68 7 chr6 49974175 49974321 -99542716 + L1MC5 LINE L1 7285 7439 -522 7 966 318 269 0 23 chr6 49974472 49974605 -99542432 + L1MC5 LINE L1 7654 7783 -178 7 966 262 237 0 0 chr6 49974712 49974771 -99542266 - ID4 SINE ID 0 83 25 7 966 250 260 70 0 chr6 49974802 49974902 -99542135 + L1MA6 LINE L1 6090 6196 -104 7 966 246 128 0 0 chr6 49974915 49974954 -99542083 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 966 218 81 27 0 chr6 49974959 49974996 -99542041 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 966 405 326 42 24 chr6 49975018 49975354 -99541683 + L1MC5 LINE L1 7574 7915 -46 7 966 861 251 116 82 chr6 49975413 49975698 -99541339 + L1MB2 LINE L1 5689 5986 -185 7 966 744 85 0 0 chr6 49975698 49975816 -99541221 + (TG)n Simple_repeat Simple_repeat 2 119 0 7 966 861 251 116 82 chr6 49975816 49975995 -99541042 + L1MB2 LINE L1 5987 6169 -2 7 966 375 276 46 9 chr6 49977219 49977333 -99539704 + PB1D10 SINE Alu 1 117 0 7 966 267 167 167 0 chr6 49979151 49979217 -99537820 + MTEa LTR MaLR 301 377 -2 7 966 424 240 0 0 chr6 49979260 49979356 -99537681 + PB1D10 SINE Alu 1 96 -21 7 966 422 261 78 17 chr6 49980612 49980791 -99536246 + MER53 DNA hAT 2 191 -2 7 966 272 237 136 88 chr6 49981735 49981860 -99535177 - RMER13A LTR ERVK -635 225 95 7 966 24 32 0 0 chr6 49984388 49984419 -99532618 + AT_rich Low_complexity Low_complexity 1 31 0 7 966 248 333 10 0 chr6 49984723 49984825 -99532212 - MIR SINE MIR -120 142 40 7 966 180 0 0 0 chr6 49984891 49984911 -99532126 + (TGG)n Simple_repeat Simple_repeat 3 22 0 7 966 180 0 0 0 chr6 49985010 49985030 -99532007 + (T)n Simple_repeat Simple_repeat 1 20 0 7 966 21 0 0 0 chr6 49985274 49985295 -99531742 + AT_rich Low_complexity Low_complexity 1 21 0 7 966 213 245 0 39 chr6 49985821 49985831 -99531206 + (CTCA)n Simple_repeat Simple_repeat 1 9 0 7 966 2116 124 22 0 chr6 49985831 49986153 -99530884 + ORR1A4 LTR MaLR 1 329 0 7 966 213 245 0 39 chr6 49986153 49986193 -99530844 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 7 966 1603 32 0 0 chr6 49986253 49986438 -99530599 + B2_Mm1a SINE B2 2 186 -7 7 966 1565 235 18 39 chr6 49986795 49987180 -99529857 - MTE2b LTR MaLR -2 377 1 7 966 283 238 112 0 chr6 49987215 49987295 -99529742 + ID_B1 SINE B4 79 167 -57 7 966 423 0 0 0 chr6 49987573 49987620 -99529417 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 966 709 274 21 5 chr6 49988545 49988736 -99528301 - B4 SINE B4 -96 196 3 7 966 407 269 43 9 chr6 49989336 49989452 -99527585 - PB1D7 SINE Alu 0 120 1 7 966 746 268 93 37 chr6 49989916 49990305 -99526732 + L1MA9 LINE L1 5412 5824 -359 7 966 438 234 64 18 chr6 49990313 49990422 -99526615 + B1F SINE Alu 36 149 0 7 966 273 268 85 65 chr6 49990423 49990592 -99526445 + L1MA9 LINE L1 5808 5999 -169 7 966 334 312 66 59 chr6 49991054 49991190 -99525847 + ID_B1 SINE B4 81 217 -7 7 966 626 149 27 0 chr6 49991545 49991718 -99525319 + Lx3B LINE L1 6760 6965 -8 7 966 477 0 0 0 chr6 49991718 49991771 -99525266 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 7 966 387 215 18 45 chr6 49991771 49991787 -99525250 + Lx3B LINE L1 6965 6976 0 7 966 228 280 31 51 chr6 49992028 49992092 -99524945 + MamRep605 Unknown Unknown 465 529 -347 7 966 588 70 0 0 chr6 49992092 49992178 -99524859 + (TG)n Simple_repeat Simple_repeat 1 86 0 7 966 228 280 31 51 chr6 49992178 49992211 -99524826 + MamRep605 Unknown Unknown 530 560 -316 7 966 927 181 246 42 chr6 49992259 49992593 -99524444 + MTD LTR MaLR 2 403 -16 7 966 499 265 60 30 chr6 49992628 49992795 -99524242 - B4A SINE B4 -59 233 62 7 966 1517 215 155 44 chr6 49993838 49994340 -99522697 + RMER4B LTR ERVK 23 580 -5 7 966 204 330 40 0 chr6 49995144 49995244 -99521793 - MIRb SINE MIR -71 197 94 7 966 1244 69 17 0 chr6 49996367 49996541 -99520496 + (TTCTCC)n Simple_repeat Simple_repeat 3 179 0 7 966 385 289 68 34 chr6 49997291 49997438 -99519599 + RSINE1 SINE B4 4 155 -10 7 966 207 0 0 0 chr6 49997482 49997505 -99519532 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 966 216 0 0 0 chr6 49997505 49997528 -99519509 + (GA)n Simple_repeat Simple_repeat 2 25 0 7 966 192 200 0 0 chr6 49997635 49997675 -99519362 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 966 299 344 71 66 chr6 49997867 49998063 -99518974 - MER63A DNA AcHobo -6 204 8 7 966 205 379 9 0 chr6 49998452 49998568 -99518469 - MER5A DNA MER1_type -9 180 64 7 966 264 77 0 55 chr6 49998595 49998650 -99518387 + (TGG)n Simple_repeat Simple_repeat 1 52 0 7 966 227 323 10 10 chr6 49999039 49999139 -99517898 + (CATATA)n Simple_repeat Simple_repeat 5 104 0 7 966 866 67 0 0 chr6 49999217 49999336 -99517701 + B1_Mm SINE Alu 29 147 0 7 966 894 217 148 48 chr6 49999355 49999626 -99517411 + ORR1D2 LTR MaLR 73 370 0 7 966 233 363 6 19 chr6 49999784 49999920 -99517117 + MIRb SINE MIR 45 181 -81 7 966 22 56 0 0 chr6 50000143 50000179 -99516858 + AT_rich Low_complexity Low_complexity 1 36 0 1 966 252 0 0 0 chr6 50000591 50000619 -99516418 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 966 409 179 18 24 chr6 50000860 50000952 -99516085 - PB1D10 SINE Alu -49 100 8 3 966 464 289 70 58 chr6 50000956 50001339 -99515698 - MLT1F LTR MaLR -15 564 128 4 966 293 346 79 0 chr6 50001475 50001602 -99515435 + MTE2a LTR MaLR 1 137 -242 5 966 366 349 13 51 chr6 50001721 50001878 -99515159 + MT2A LTR ERVL 281 431 -102 6 966 596 59 12 0 chr6 50001972 50002057 -99514980 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 7 966 402 293 79 62 chr6 50002114 50002405 -99514632 - L2 LINE L2 -554 2865 2570 8 966 304 244 13 0 chr6 50002405 50002483 -99514554 + PB1D9 SINE Alu 42 120 0 9 966 268 274 151 0 chr6 50002912 50003018 -99514019 + B1F2 SINE Alu 28 149 0 1 966 229 343 81 17 chr6 50003314 50003486 -99513551 - L2b LINE L2 -84 3291 3109 1 966 261 250 34 77 chr6 50005225 50005342 -99511695 + L1MB3 LINE L1 6049 6160 -23 1 966 456 19 0 0 chr6 50005708 50005761 -99511276 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 966 265 231 18 18 chr6 50006197 50006307 -99510730 + (TATG)n Simple_repeat Simple_repeat 4 113 0 1 966 950 151 209 5 chr6 50006388 50006575 -99510462 + URR1B DNA MER1_type 1 225 0 1 966 699 12 0 0 chr6 50008944 50009024 -99508013 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 966 309 238 0 54 chr6 50009446 50009591 -99507446 - L1MB7 LINE L1 -4 6180 6050 1 966 1603 252 59 24 chr6 50009979 50010434 -99506603 - Lx8 LINE L1 -3 7470 7000 1 966 33684 46 3 1 chr6 50010429 50015286 -99501751 - L1Md_F3 LINE L1 0 6584 1721 1 966 1865 200 52 2 chr6 50015282 50015683 -99501354 - L1Md_A LINE L1 -6101 623 203 2 966 2336 259 100 53 chr6 50015686 50015811 -99501226 - Lx8 LINE L1 -464 7009 6858 1 966 1113 84 0 0 chr6 50015811 50015965 -99501072 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 2 966 285 29 0 0 chr6 50015966 50016000 -99501037 + (GGAAA)n Simple_repeat Simple_repeat 1 34 0 2 966 2336 259 100 53 chr6 50016000 50016623 -99500414 - Lx8 LINE L1 -616 6857 6224 1 966 1461 282 111 33 chr6 50016662 50017371 -99499666 - L1M2 LINE L1 -3459 3123 2356 2 966 204 40 0 0 chr6 50017371 50017396 -99499641 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 966 1461 289 105 49 chr6 50017396 50017919 -99499118 - L1M2 LINE L1 -4227 2355 1754 2 966 1892 175 79 3 chr6 50017937 50018304 -99498733 - MTD LTR MaLR -9 410 16 2 966 1407 181 8 8 chr6 50018942 50019198 -99497839 - L1_Rod LINE L1 -928 4919 4664 2 966 2535 222 102 35 chr6 50019186 50019320 -99497717 + Lx9 LINE L1 6873 6999 -645 2 966 1850 164 52 30 chr6 50019320 50019685 -99497352 + Lx LINE L1 6266 6638 -16 2 966 1022 116 12 0 chr6 50019689 50019853 -99497184 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 2 966 2535 222 102 35 chr6 50019853 50020321 -99496716 + Lx9 LINE L1 7000 7472 -172 2 966 381 43 0 0 chr6 50020321 50020368 -99496669 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 966 2535 222 102 35 chr6 50020368 50020478 -99496559 + Lx9 LINE L1 7473 7638 -6 2 966 400 320 114 19 chr6 50022632 50022842 -99494195 - MLT2E LTR ERVL -290 338 109 3 966 2668 188 143 16 chr6 50023208 50023850 -99493187 - RMER19B LTR ERVK 0 902 179 3 966 2351 193 11 53 chr6 50023857 50024400 -99492637 - RLTR17 LTR ERVK -172 520 1 3 966 3476 202 14 29 chr6 50024400 50025194 -99491843 - RMER3D-int LTR ERVK 0 2842 2061 3 966 741 195 13 55 chr6 50025223 50025454 -99491583 - RMER19B LTR ERVK -719 183 1 3 966 492 293 0 36 chr6 50025982 50026120 -99490917 - RSINE1 SINE B4 -18 147 15 3 966 207 0 0 0 chr6 50026350 50026373 -99490664 + (A)n Simple_repeat Simple_repeat 1 23 0 3 966 331 83 0 32 chr6 50026956 50027018 -99490019 + (CCCCCT)n Simple_repeat Simple_repeat 2 61 0 3 966 340 225 75 37 chr6 50027018 50027152 -99489885 - RLTR15 LTR ERVK -220 139 1 3 966 498 33 0 0 chr6 50027266 50027326 -99489711 + (GGA)n Simple_repeat Simple_repeat 1 60 0 3 966 1913 103 56 3 chr6 50029125 50029428 -99487609 + ORR1A2 LTR MaLR 1 319 -8 3 966 227 279 11 44 chr6 50029441 50029531 -99487506 - MIRc SINE MIR -117 151 65 4 966 553 239 7 29 chr6 50031215 50031353 -99485684 + L1MB3 LINE L1 5732 5866 -317 4 966 304 316 0 0 chr6 50031465 50031563 -99485474 - MER5A DNA MER1_type -54 135 38 4 966 294 242 30 0 chr6 50032480 50032546 -99484491 + ID4_ SINE ID 1 68 -15 4 966 358 165 25 0 chr6 50032547 50032626 -99484411 + GA-rich Low_complexity Low_complexity 1 81 0 4 966 22 70 0 0 chr6 50032739 50032782 -99484255 + AT_rich Low_complexity Low_complexity 1 43 0 4 966 333 255 204 7 chr6 50033461 50033637 -99483400 + L1M5 LINE L1 5475 5685 -488 4 966 565 297 42 52 chr6 50033645 50034029 -99483008 + L1M3 LINE L1 3853 4232 -1908 4 966 268 159 31 16 chr6 50034030 50034094 -99482943 + L1ME3A LINE L1 5869 5933 -379 4 966 180 234 0 0 chr6 50034094 50034141 -99482896 + (TATG)n Simple_repeat Simple_repeat 1 47 0 4 966 288 351 35 5 chr6 50034726 50034929 -99482108 + L1ME3A LINE L1 5963 6171 -2 4 966 902 217 40 6 chr6 50037204 50037380 -99479657 + B3A SINE B2 1 182 -16 5 966 806 228 51 31 chr6 50037425 50037620 -99479417 + B3 SINE B2 4 202 -14 5 966 24 53 0 0 chr6 50037633 50037671 -99479366 + AT_rich Low_complexity Low_complexity 1 38 0 5 966 22 0 0 0 chr6 50037704 50037726 -99479311 + AT_rich Low_complexity Low_complexity 1 22 0 5 966 198 256 114 13 chr6 50037932 50038011 -99479026 - MIRb SINE MIR -1 267 181 5 966 405 86 0 0 chr6 50038823 50038881 -99478156 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 966 629 292 123 43 chr6 50038955 50039485 -99477552 - L1ME4a LINE L1 -254 5870 5299 5 966 229 268 0 18 chr6 50039942 50039999 -99477038 - MER5A DNA MER1_type -103 86 31 4 966 626 225 0 0 chr6 50040133 50040253 -99476784 - B1_Mus2 SINE Alu -19 128 9 5 966 294 36 17 52 chr6 50041130 50041188 -99475849 + (TTG)n Simple_repeat Simple_repeat 2 57 0 5 966 212 302 90 8 chr6 50041620 50041748 -99475289 - MIR SINE MIR -124 144 3 5 966 194 274 8 128 chr6 50042011 50042128 -99474909 + L2c LINE L2 3276 3378 -9 6 966 351 65 0 0 chr6 50043541 50043587 -99473450 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 966 951 289 8 0 chr6 50043603 50043842 -99473195 - B4A SINE B4 -42 250 10 6 966 4147 166 63 70 chr6 50044374 50045283 -99471754 + RMER19B LTR ERVK 1 902 0 6 966 973 70 7 20 chr6 50045433 50045579 -99471458 + MT2C_Mm LTR ERVL 332 475 0 6 966 33100 117 32 10 chr6 50045579 50050948 -99466089 + MERVL_2A-int LTR ERVL 1 5629 -132 6 966 329 151 13 40 chr6 50050948 50051024 -99466013 + ORR1A3-int LTR MaLR 567 640 -1323 6 966 302 27 0 0 chr6 50051024 50051061 -99465976 + MERVL-int LTR ERVL 5448 5484 -1 6 966 2724 81 5 18 chr6 50051062 50051463 -99465574 + MT2C_Mm LTR ERVL 1 396 -79 6 966 1359 193 30 4 chr6 50051465 50051735 -99465302 + Lx4B LINE L1 6505 6781 -277 6 966 598 342 61 29 chr6 50052715 50053061 -99463976 + MLT1A0 LTR MaLR 9 365 0 6 966 309 231 26 0 chr6 50053635 50053713 -99463324 + RSINE1 SINE B4 82 161 -4 6 966 23 33 0 0 chr6 50053808 50053838 -99463199 + AT_rich Low_complexity Low_complexity 1 30 0 7 966 368 299 0 138 chr6 50054277 50054436 -99462601 - B1F SINE Alu -2 147 11 7 966 218 170 21 21 chr6 50056489 50056537 -99460500 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 7 966 244 312 96 26 chr6 50057068 50057183 -99459854 + MER5B DNA MER1_type 6 128 -50 7 966 27 0 0 0 chr6 50057500 50057527 -99459510 + AT_rich Low_complexity Low_complexity 1 27 0 7 966 1014 214 5 41 chr6 50057638 50057857 -99459180 - B3 SINE B2 -5 211 1 7 966 23 0 0 0 chr6 50059642 50059665 -99457372 + AT_rich Low_complexity Low_complexity 1 23 0 7 966 23 68 0 0 chr6 50060288 50060332 -99456705 + GC_rich Low_complexity Low_complexity 1 44 0 7 966 22 35 0 0 chr6 50060513 50060542 -99456495 + GC_rich Low_complexity Low_complexity 1 29 0 7 966 27 106 0 0 chr6 50060576 50060680 -99456357 + GC_rich Low_complexity Low_complexity 1 104 0 7 966 26 30 0 0 chr6 50061637 50061670 -99455367 + AT_rich Low_complexity Low_complexity 1 33 0 8 966 306 0 0 0 chr6 50061802 50061836 -99455201 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 966 29 0 0 0 chr6 50061990 50062019 -99455018 + AT_rich Low_complexity Low_complexity 1 29 0 8 966 626 265 47 26 chr6 50063821 50064011 -99453026 - B3 SINE B2 -8 208 15 8 966 201 39 0 0 chr6 50064015 50064041 -99452996 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 966 1341 82 38 0 chr6 50064855 50065039 -99451998 + B2_Mm2 SINE B2 3 193 -2 8 966 232 359 47 0 chr6 50065206 50065270 -99451767 + ID_B1 SINE B4 68 134 -90 8 966 251 289 283 22 chr6 50065221 50065313 -99451724 + B1F1 SINE Alu 5 120 0 8 966 912 46 100 0 chr6 50065786 50065916 -99451121 + B1_Mus1 SINE Alu 6 148 0 8 966 541 304 61 71 chr6 50066924 50067221 -99449816 - MLT1D LTR MaLR -4 501 208 8 966 298 337 160 0 chr6 50067419 50067606 -99449431 + MER20 DNA MER1_type 2 218 -1 9 966 456 104 0 0 chr6 50067715 50067782 -99449255 + (TG)n Simple_repeat Simple_repeat 2 68 0 9 966 634 281 116 63 chr6 50068248 50068608 -99448429 - MTC LTR MaLR 0 396 1 9 966 94 50 0 6 chr6 50068708 50068765 -99448272 + AT_rich Low_complexity Low_complexity 1 57 0 9 966 1189 43 0 0 chr6 50068765 50068906 -99448131 - B1_Mus2 SINE Alu -5 142 2 9 966 94 50 0 6 chr6 50068906 50069009 -99448028 + AT_rich Low_complexity Low_complexity 1 103 0 9 966 257 263 135 10 chr6 50069161 50069257 -99447780 - PB1D7 SINE Alu -12 108 1 9 966 24 0 0 0 chr6 50069456 50069480 -99447557 + AT_rich Low_complexity Low_complexity 1 24 0 9 967 28 61 0 0 chr6 50069956 50070005 -99447032 + AT_rich Low_complexity Low_complexity 1 49 0 9 967 22 35 0 0 chr6 50070866 50070895 -99446142 + AT_rich Low_complexity Low_complexity 1 29 0 9 967 1833 228 45 20 chr6 50070973 50071376 -99445661 + MTD LTR MaLR 6 418 -1 1 967 328 219 198 0 chr6 50071376 50071470 -99445567 + RSINE1 SINE B4 16 128 -37 1 967 38 39 0 0 chr6 50071481 50071533 -99445504 + AT_rich Low_complexity Low_complexity 1 52 0 1 967 367 296 43 43 chr6 50072494 50072632 -99444405 + B1F SINE Alu 1 138 -11 1 967 1619 126 140 23 chr6 50072961 50073269 -99443768 + RLTR25A LTR ERVK 43 386 -717 1 967 3331 37 0 0 chr6 50073269 50073676 -99443361 - L1Md_F2 LINE L1 -168 6414 6008 1 967 957 31 0 30 chr6 50073676 50073810 -99443227 + L1Md_F2 LINE L1 6441 6570 -12 1 967 3424 162 54 47 chr6 50073855 50073982 -99443055 + RLTR25A LTR ERVK 375 503 -600 1 967 306 0 0 0 chr6 50073982 50074016 -99443021 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 967 1109 80 0 0 chr6 50074016 50074154 -99442883 - B1_Mm SINE Alu -9 138 1 1 967 3424 162 54 47 chr6 50074154 50074723 -99442314 + RLTR25A LTR ERVK 504 1076 -27 1 967 750 192 7 46 chr6 50075289 50075442 -99441595 - B1_Mur1 SINE Alu 0 149 3 1 967 24 53 0 0 chr6 50075451 50075489 -99441548 + AT_rich Low_complexity Low_complexity 1 38 0 1 967 1847 145 42 98 chr6 50075505 50075911 -99441126 + ORR1C2 LTR MaLR 2 384 0 1 967 476 200 24 0 chr6 50075925 50076010 -99441027 + PB1D9 SINE Alu 13 99 -21 1 967 261 309 105 41 chr6 50076766 50076938 -99440099 - MLT1C LTR MaLR -2 465 283 1 967 757 263 191 22 chr6 50077072 50077391 -99439646 + MTE2b LTR MaLR 1 373 -6 1 967 635 171 89 0 chr6 50077926 50078049 -99438988 + B1_Mur4 SINE Alu 2 135 -15 1 967 207 88 0 0 chr6 50078053 50078087 -99438950 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 1 967 336 102 0 0 chr6 50078648 50078697 -99438340 + (T)n Simple_repeat Simple_repeat 1 49 0 1 967 1168 68 0 0 chr6 50078717 50078863 -99438174 - B1_Mus2 SINE Alu 0 147 2 1 967 892 160 178 0 chr6 50079406 50079575 -99437462 - B3 SINE B2 -16 200 2 1 967 969 234 186 25 chr6 50079854 50080216 -99436821 - MTC LTR MaLR 0 421 4 1 967 9024 59 12 0 chr6 50080402 50081614 -99435423 + L1Md_F2 LINE L1 4360 5586 -297 1 967 8147 48 1 3 chr6 50081614 50082612 -99434425 + L1Md_F2 LINE L1 5587 6582 0 1 967 245 297 54 0 chr6 50084345 50084419 -99432618 - ID2 SINE ID -1 82 5 1 967 219 69 0 0 chr6 50084496 50084525 -99432512 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 967 366 203 8 16 chr6 50084816 50084941 -99432096 + (TA)n Simple_repeat Simple_repeat 2 125 0 1 967 624 317 260 25 chr6 50084988 50085661 -99431376 - HAL1 LINE L1 -442 2065 1235 1 967 554 322 188 23 chr6 50086255 50086471 -99430566 - Tigger7 DNA MER2_type -1960 531 256 1 967 279 71 0 0 chr6 50086471 50086513 -99430524 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 967 554 322 188 23 chr6 50086513 50086732 -99430305 - Tigger7 DNA MER2_type -2236 255 25 1 967 318 330 33 0 chr6 50087135 50087226 -99429811 + MER44B DNA MER2_type 9 102 -448 1 967 494 259 173 0 chr6 50087230 50087392 -99429645 + MER44B DNA MER2_type 353 542 -8 1 967 189 0 0 0 chr6 50087609 50087630 -99429407 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 967 315 0 0 0 chr6 50087630 50087664 -99429373 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 967 541 328 60 54 chr6 50088280 50088612 -99428425 + ORR1E LTR MaLR 9 342 -17 1 967 2053 308 133 95 chr6 50088634 50089955 -99427082 + ORR1E-int LTR MaLR 5 1735 0 1 967 678 303 150 13 chr6 50089955 50090269 -99426768 + ORR1E LTR MaLR 1 357 -2 1 967 260 376 80 21 chr6 50090373 50090612 -99426425 + L1MD2 LINE L1 403 655 -5892 1 967 260 347 11 0 chr6 50090688 50090783 -99426254 + L1MD2 LINE L1 828 923 -5624 1 967 3337 35 2 2 chr6 50091284 50091680 -99425357 - MTA_Mm LTR MaLR 0 396 1 1 967 309 325 36 1 chr6 50091778 50091885 -99425152 + PB1D10 SINE Alu 1 112 -37 1 967 604 260 44 29 chr6 50092727 50092933 -99424104 + B3 SINE B2 2 210 -6 1 967 23 33 0 0 chr6 50093427 50093457 -99423580 + AT_rich Low_complexity Low_complexity 1 30 0 1 967 188 438 0 20 chr6 50094127 50094225 -99422812 - L2b LINE L2 -22 3353 3258 1 967 330 26 0 0 chr6 50094295 50094334 -99422703 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 967 304 348 71 75 chr6 50094622 50094917 -99422120 + ORR1E LTR MaLR 55 348 -11 1 967 237 132 0 0 chr6 50095115 50095153 -99421884 + (TCC)n Simple_repeat Simple_repeat 3 40 0 1 967 198 170 21 21 chr6 50096837 50096885 -99420152 - MIRc SINE MIR -17 251 204 1 967 404 308 103 81 chr6 50097143 50097225 -99419812 + B4 SINE B4 5 89 -203 1 967 333 0 0 0 chr6 50097225 50097262 -99419775 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 967 404 308 103 81 chr6 50097262 50097440 -99419597 + B4 SINE B4 90 271 -21 1 967 419 289 117 33 chr6 50097665 50097953 -99419084 + L1MEf LINE L1 1282 1592 -5041 1 967 1025 258 34 118 chr6 50097961 50098427 -99418610 + RMER10A LTR ERVL 1 427 -15 1 967 1466 77 0 5 chr6 50098828 50099024 -99418013 + B2_Mm2 SINE B2 1 195 0 1 967 1161 62 0 20 chr6 50099043 50099192 -99417845 + B1_Mus2 SINE Alu 2 147 0 1 967 1238 223 102 7 chr6 50099358 50099661 -99417376 - MTD LTR MaLR 0 419 88 1 967 347 216 29 19 chr6 50099663 50099767 -99417270 - L1_Rod LINE L1 -793 5054 4950 1 967 1077 197 139 0 chr6 50099788 50100083 -99416954 - Lx9 LINE L1 -1 7643 7308 1 967 1867 242 70 38 chr6 50100255 50101245 -99415792 - L1_Rod LINE L1 -1192 4951 3891 1 967 944 198 40 68 chr6 50101243 50101638 -99415399 - L1_Rod LINE L1 -2394 3453 3070 1 967 1751 236 187 21 chr6 50101610 50102317 -99414720 - L1_Rod LINE L1 -2933 2914 2091 1 967 1463 192 28 147 chr6 50102861 50103283 -99413754 - ORR1D1 LTR MaLR -2 372 1 1 967 399 211 3 31 chr6 50103629 50103755 -99413282 + MTC LTR MaLR 290 421 0 1 967 674 232 156 23 chr6 50103785 50104138 -99412899 - L1M4 LINE L1 -1642 4504 4105 1 967 324 291 39 10 chr6 50104545 50104649 -99412388 - L1MC LINE L1 -2448 5434 5328 1 967 473 139 0 75 chr6 50105892 50105985 -99411052 - B1_Mur1 SINE Alu -7 142 57 1 967 351 283 71 0 chr6 50106233 50106346 -99410691 - B1F1 SINE Alu -28 121 1 1 967 384 274 20 0 chr6 50107099 50107201 -99409836 + PB1 SINE Alu 2 105 -22 1 967 207 114 0 0 chr6 50107687 50107722 -99409315 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 967 327 25 0 0 chr6 50107943 50107983 -99409054 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 967 301 255 72 52 chr6 50108000 50108101 -99408936 - B1_Mm SINE Alu 0 120 14 1 967 236 252 66 90 chr6 50108010 50108132 -99408905 - YREP_Mm Unknown Unknown -868 944 826 1 967 598 258 25 13 chr6 50108443 50108600 -99408437 - RSINE1 SINE B4 -4 161 3 1 967 21 0 0 0 chr6 50109143 50109164 -99407873 + AT_rich Low_complexity Low_complexity 1 21 0 1 967 606 227 45 0 chr6 50109326 50109458 -99407579 - RSINE1 SINE B4 -24 141 4 1 967 585 0 0 0 chr6 50109747 50109812 -99407225 + (GGA)n Simple_repeat Simple_repeat 2 66 0 1 967 1113 166 31 44 chr6 50110526 50110753 -99406284 + URR1B DNA MER1_type 1 224 -1 1 967 255 103 0 0 chr6 50111443 50111482 -99405555 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 1 967 242 287 72 27 chr6 50111489 50111600 -99405437 - PB1D10 SINE Alu -1 116 1 1 967 355 242 96 51 chr6 50111600 50111674 -99405363 - B4A SINE B4 -206 86 6 1 967 42 48 0 0 chr6 50113029 50113092 -99403945 + AT_rich Low_complexity Low_complexity 1 63 0 1 967 330 294 32 134 chr6 50114134 50114291 -99402746 + B1F SINE Alu 9 149 0 1 967 1692 246 17 0 chr6 50114708 50115066 -99401971 - MTEb LTR MaLR 0 379 16 1 967 965 301 165 26 chr6 50115520 50116028 -99401009 + Tigger7 DNA MER2_type 9 587 -1904 1 967 5431 42 1 5 chr6 50116312 50116978 -99400059 - L1Md_F2 LINE L1 -12 6570 5907 1 967 471 123 0 8 chr6 50117228 50117321 -99399716 + B1_Mus2 SINE Alu 60 149 0 1 967 302 111 0 0 chr6 50117485 50117530 -99399507 - tRNA-Thr-ACG_ tRNA tRNA -32 45 1 1 967 490 200 68 88 chr6 50117617 50117765 -99399272 - ORR1D1 LTR MaLR -68 316 172 1 967 716 289 109 47 chr6 50117736 50117820 -99399217 - ORR1D1 LTR MaLR -109 261 169 1 967 789 40 0 0 chr6 50117820 50117921 -99399116 + (CATA)n Simple_repeat Simple_repeat 4 104 0 1 967 716 198 75 35 chr6 50117921 50118081 -99398956 - ORR1D1 LTR MaLR -206 168 2 1 967 310 286 127 12 chr6 50118290 50118456 -99398581 + L1MC LINE L1 5062 5246 -900 1 967 2456 63 103 50 chr6 50118642 50119041 -99397996 - BGLII LTR ERVK 0 421 2 1 967 294 50 0 0 chr6 50119165 50119205 -99397832 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 1 967 198 0 0 0 chr6 50119205 50119227 -99397810 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 1 967 184 100 24 24 chr6 50119386 50119427 -99397610 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 967 29 0 0 0 chr6 50120445 50120474 -99396563 + AT_rich Low_complexity Low_complexity 1 29 0 1 967 1218 246 81 43 chr6 50120808 50121153 -99395884 - MTE2b LTR MaLR 0 379 22 1 967 23 33 0 0 chr6 50121166 50121196 -99395841 + AT_rich Low_complexity Low_complexity 1 30 0 1 967 2679 54 24 0 chr6 50121316 50121649 -99395388 - ORR1A1 LTR MaLR -4 342 2 1 967 258 229 107 27 chr6 50122595 50122707 -99394330 - Lx8 LINE L1 0 7473 7353 1 967 1348 287 52 0 chr6 50122751 50123194 -99393843 - Lx8 LINE L1 -247 7226 6761 1 967 318 235 41 0 chr6 50123399 50123497 -99393540 - L1M5 LINE L1 -351 5828 5727 1 967 579 261 66 29 chr6 50123529 50123801 -99393236 - L1M5 LINE L1 -530 5649 5368 1 967 1764 160 113 55 chr6 50123878 50124276 -99392761 + MTC LTR MaLR 1 421 0 1 967 180 97 0 0 chr6 50124343 50124374 -99392663 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 1 967 1224 34 0 20 chr6 50124377 50124527 -99392510 - B1_Mus2 SINE Alu 0 147 1 1 967 517 287 9 9 chr6 50124717 50124833 -99392204 - PB1D7 SINE Alu -4 116 1 1 967 360 0 0 0 chr6 50124874 50124914 -99392123 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 967 369 0 0 0 chr6 50124914 50124954 -99392083 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 967 243 227 12 96 chr6 50124981 50125064 -99391973 - ID_B1 SINE B4 -3 221 146 1 967 220 120 0 57 chr6 50125150 50125203 -99391834 + T-rich Low_complexity Low_complexity 3 52 0 1 967 302 316 6 37 chr6 50125335 50125496 -99391541 - Lx9 LINE L1 -187 7457 7302 1 967 216 0 0 0 chr6 50125508 50125532 -99391505 + (T)n Simple_repeat Simple_repeat 1 24 0 1 967 1096 101 0 0 chr6 50125532 50125680 -99391357 - B1_Mus1 SINE Alu 0 148 1 1 967 490 262 127 14 chr6 50125869 50126022 -99391015 - L1MC LINE L1 -2240 5642 5470 2 967 210 37 0 0 chr6 50126022 50126049 -99390988 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 2 967 490 262 127 14 chr6 50126049 50126170 -99390867 - L1MC LINE L1 -2413 5469 5338 2 967 215 205 61 49 chr6 50128075 50128157 -99388880 + ID SINE ID 1 83 -141 2 967 22 56 0 0 chr6 50128229 50128265 -99388772 + AT_rich Low_complexity Low_complexity 1 36 0 2 967 323 207 227 58 chr6 50129444 50129598 -99387439 + B3A SINE B2 1 180 -18 2 967 180 0 0 0 chr6 50130332 50130352 -99386685 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 967 21 36 0 0 chr6 50130734 50130762 -99386275 + AT_rich Low_complexity Low_complexity 1 28 0 2 967 201 260 0 20 chr6 50131087 50131138 -99385899 + GA-rich Low_complexity Low_complexity 1 50 0 2 967 378 259 42 0 chr6 50131328 50131471 -99385566 + L1MA9 LINE L1 6164 6312 0 2 967 250 244 0 0 chr6 50131493 50131538 -99385499 + ID4_ SINE ID 39 83 0 2 967 349 288 189 33 chr6 50131615 50131974 -99385063 + L1M1 LINE L1 5386 5800 -503 2 967 1265 142 9 52 chr6 50132797 50132856 -99384181 + URR1B DNA MER1_type 5 55 -170 2 967 3190 61 10 0 chr6 50132856 50133252 -99383785 - MTB LTR MaLR 0 400 1 2 967 1265 142 9 52 chr6 50133252 50133423 -99383614 + URR1B DNA MER1_type 56 225 0 2 967 634 241 59 67 chr6 50135049 50135253 -99381784 - B3A SINE B2 -1 215 9 2 967 23 0 0 0 chr6 50135255 50135278 -99381759 + AT_rich Low_complexity Low_complexity 1 23 0 2 967 621 295 61 0 chr6 50135525 50135775 -99381262 - Lx8 LINE L1 -1566 5907 5621 2 967 526 286 28 17 chr6 50135847 50136016 -99381021 - B4A SINE B4 -7 285 119 2 967 246 32 0 0 chr6 50136037 50136068 -99380969 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2 967 806 247 15 50 chr6 50136068 50136268 -99380769 - B3 SINE B2 -22 194 2 2 967 266 244 219 0 chr6 50136268 50136346 -99380691 - B4A SINE B4 -195 97 2 2 967 834 262 36 23 chr6 50136361 50136670 -99380367 - Lx8 LINE L1 -334 5546 5234 2 967 24 77 0 0 chr6 50136741 50136793 -99380244 + AT_rich Low_complexity Low_complexity 1 52 0 2 967 445 270 125 10 chr6 50136915 50137218 -99379819 - Lx8 LINE L1 -1014 4866 4529 2 967 330 233 143 14 chr6 50137650 50137985 -99379052 - L1M4 LINE L1 -2819 3327 2916 2 967 783 284 112 28 chr6 50138493 50139206 -99377831 - L1M4 LINE L1 -3211 2935 2163 2 967 883 267 90 14 chr6 50140210 50140487 -99376550 - MER2 DNA MER2_type -38 307 10 2 967 4835 101 58 7 chr6 50140676 50141377 -99375660 - RMER19A LTR ERVK 0 737 1 2 967 305 204 213 0 chr6 50142156 50142264 -99374773 + L1MB3 LINE L1 5338 5468 -715 2 967 338 232 47 68 chr6 50142315 50142463 -99374574 + L1MB3 LINE L1 6035 6179 -4 2 967 282 56 0 0 chr6 50142776 50142812 -99374225 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 967 832 164 20 0 chr6 50144088 50144234 -99372803 + B1_Mur4 SINE Alu 2 150 0 2 967 1003 313 51 11 chr6 50145495 50145928 -99371109 - Lx8 LINE L1 -244 7229 6780 2 967 1542 32 11 16 chr6 50146132 50146323 -99370714 + B2_Mm1a SINE B2 2 191 -2 2 967 318 106 0 0 chr6 50149621 50149668 -99367369 + (T)n Simple_repeat Simple_repeat 1 47 0 2 967 1059 43 65 0 chr6 50149668 50149807 -99367230 - B1_Mus1 SINE Alu 0 148 1 2 967 351 65 0 0 chr6 50150126 50150172 -99366865 + (T)n Simple_repeat Simple_repeat 1 46 0 2 967 350 189 102 19 chr6 50151454 50151562 -99365475 + PB1 SINE Alu 11 127 0 2 967 658 174 29 29 chr6 50152678 50152814 -99364223 + B1_Mur3 SINE Alu 1 136 -13 2 967 2004 164 80 21 chr6 50155060 50155446 -99361591 - MTC LTR MaLR -5 416 8 2 967 189 107 0 0 chr6 50155602 50155630 -99361407 + (T)n Simple_repeat Simple_repeat 1 28 0 2 967 597 275 68 30 chr6 50156499 50156777 -99360260 - B4A SINE B4 -4 288 1 2 967 513 261 196 22 chr6 50158792 50159348 -99357689 - L1MA4 LINE L1 -395 6765 6102 2 967 647 174 16 0 chr6 50159761 50159882 -99357155 - B1_Mur2 SINE Alu 0 149 27 2 967 387 245 24 133 chr6 50159763 50159928 -99357109 - B4 SINE B4 -69 223 77 2 967 183 100 0 0 chr6 50160795 50160825 -99356212 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 2 967 201 74 0 0 chr6 50161410 50161437 -99355600 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2 967 394 261 198 9 chr6 50161887 50162003 -99355034 - ID_B1 SINE B4 -7 217 80 2 967 207 0 0 0 chr6 50162013 50162036 -99355001 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 967 279 79 0 0 chr6 50162036 50162074 -99354963 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 2 967 1141 63 0 0 chr6 50162094 50162237 -99354800 - B1_Mus1 SINE Alu -5 143 1 2 967 259 186 29 0 chr6 50162247 50162317 -99354720 - L1MA4 LINE L1 -3936 3067 2996 2 967 335 328 55 17 chr6 50162355 50162591 -99354446 - L1MA4 LINE L1 -4099 2908 2664 2 967 366 246 71 72 chr6 50162672 50162869 -99354168 - L1MA4 LINE L1 -4890 2212 1930 2 967 283 250 0 19 chr6 50163021 50163127 -99353910 - L1MA4 LINE L1 -4978 2029 1926 2 967 319 276 172 0 chr6 50166475 50166562 -99350475 + PB1D10 SINE Alu 1 102 -15 2 967 392 210 120 0 chr6 50166664 50166764 -99350273 + PB1D9 SINE Alu 2 113 -7 2 967 314 271 58 68 chr6 50166955 50167058 -99349979 - PB1D10 SINE Alu 0 117 16 2 967 414 289 92 56 chr6 50170473 50170817 -99346220 + MLT1C LTR MaLR 50 459 -8 2 967 315 0 0 0 chr6 50172279 50172314 -99344723 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 967 996 228 140 25 chr6 50173028 50173343 -99343694 + ORR1E LTR MaLR 5 355 -4 2 967 528 222 0 0 chr6 50173344 50173443 -99343594 - PB1D10 SINE Alu -15 102 4 2 967 1208 61 0 0 chr6 50174622 50174770 -99342267 + B1_Mus1 SINE Alu 1 148 0 2 967 326 0 0 69 chr6 50174773 50174831 -99342206 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 2 967 768 214 75 20 chr6 50175001 50175201 -99341836 + B3 SINE B2 1 211 -5 2 967 408 317 52 10 chr6 50175292 50175577 -99341460 + L1MA5 LINE L1 5755 6060 -240 2 967 717 255 7 0 chr6 50175648 50175801 -99341236 + RSINE1 SINE B4 3 156 -9 2 967 414 0 0 0 chr6 50175802 50175848 -99341189 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 967 291 145 52 13 chr6 50176180 50176257 -99340780 + GA-rich Low_complexity Low_complexity 2 81 0 2 967 304 260 25 49 chr6 50176270 50176351 -99340686 + ID_B1 SINE B4 84 162 -62 2 967 233 276 162 10 chr6 50176351 50176369 -99340668 + PB1 SINE Alu 3 116 -11 2 967 228 256 118 39 chr6 50176353 50176633 -99340404 + RMER17A2 LTR ERVK 291 592 -314 2 967 1332 247 138 0 chr6 50176670 50176990 -99340047 - ORR1D2 LTR MaLR -6 364 1 2 967 1065 16 0 0 chr6 50177857 50177980 -99339057 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 2 967 333 0 0 0 chr6 50178809 50178846 -99338191 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 2 967 379 250 13 79 chr6 50180433 50180585 -99336452 + L1MB3 LINE L1 5819 5960 -223 2 967 940 278 70 4 chr6 50180601 50180872 -99336165 + B4A SINE B4 1 289 -3 2 967 282 363 42 1 chr6 50181558 50181726 -99335311 + L2a LINE L2 3201 3426 0 2 967 201 289 0 19 chr6 50181806 50181859 -99335178 + GA-rich Low_complexity Low_complexity 4 55 0 2 967 629 244 17 73 chr6 50182197 50182374 -99334663 + B3 SINE B2 4 170 -46 2 967 282 317 119 28 chr6 50182512 50182655 -99334382 + B4 SINE B4 43 198 -94 2 967 698 189 8 16 chr6 50182551 50182675 -99334362 + B1F SINE Alu 7 129 -20 2 967 724 285 16 119 chr6 50184193 50184698 -99332339 + L1MA4A LINE L1 3929 4381 -1762 2 967 453 311 59 0 chr6 50184700 50184835 -99332202 + B1F SINE Alu 1 143 -6 2 967 369 252 139 0 chr6 50184924 50185039 -99331998 + B1F SINE Alu 1 131 -18 2 967 681 301 124 37 chr6 50185078 50185617 -99331420 + L1MA4A LINE L1 4739 5324 -819 2 967 585 275 123 56 chr6 50185694 50186168 -99330869 + L1MA4A LINE L1 5453 5995 -305 2 967 536 245 98 4 chr6 50186175 50186335 -99330702 + B3A SINE B2 3 183 -33 2 967 327 85 0 0 chr6 50186335 50186382 -99330655 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 967 484 262 133 29 chr6 50186382 50186394 -99330643 + B3 SINE B2 184 193 -23 2 967 235 259 11 23 chr6 50186471 50186558 -99330479 + L1MA4A LINE L1 6204 6289 -11 2 967 475 302 85 89 chr6 50186922 50187180 -99329857 + B4A SINE B4 36 292 0 2 967 279 190 0 0 chr6 50187180 50187238 -99329799 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 967 350 247 0 0 chr6 50187676 50187749 -99329288 + Lx9 LINE L1 7397 7469 -175 2 967 25 0 0 0 chr6 50187855 50187880 -99329157 + AT_rich Low_complexity Low_complexity 1 25 0 2 967 293 347 172 9 chr6 50188407 50188634 -99328403 + MLT1L LTR MaLR 60 323 -287 2 967 1065 299 88 12 chr6 50189595 50190057 -99326980 + Tigger7 DNA MER2_type 29 565 -1926 2 967 518 305 47 94 chr6 50190070 50190410 -99326627 + Tigger7 DNA MER2_type 2168 2491 0 2 967 279 113 0 0 chr6 50190421 50190474 -99326563 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 967 366 23 0 0 chr6 50191961 50192004 -99325033 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 967 243 0 0 0 chr6 50192005 50192032 -99325005 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 967 629 249 0 6 chr6 50192454 50192632 -99324405 + CT-rich Low_complexity Low_complexity 1 177 0 2 967 484 237 152 0 chr6 50192632 50192750 -99324287 - B1_Mus2 SINE Alu -7 140 5 2 967 200 213 0 0 chr6 50193979 50194026 -99323011 + T-rich Low_complexity Low_complexity 1 47 0 2 967 185 172 0 0 chr6 50194988 50195017 -99322020 + MIRm SINE MIR 227 255 -21 2 967 294 29 0 0 chr6 50195365 50195400 -99321637 + (A)n Simple_repeat Simple_repeat 1 35 0 2 967 180 0 0 0 chr6 50195440 50195460 -99321577 + (CCCA)n Simple_repeat Simple_repeat 1 20 0 2 967 635 139 10 0 chr6 50195717 50195818 -99321219 + RLTR15 LTR ERVK 1 102 -257 2 967 1041 228 195 19 chr6 50196340 50196658 -99320379 + MTEa LTR MaLR 2 375 -4 2 967 502 52 39 0 chr6 50197195 50197272 -99319765 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 2 967 407 306 45 40 chr6 50197538 50197739 -99319298 - ORR1E LTR MaLR -157 202 1 2 967 1425 237 55 17 chr6 50198297 50198658 -99318379 + MTE2b LTR MaLR 1 375 -4 2 967 369 209 572 6 chr6 50199288 50199467 -99317570 + B4A SINE B4 1 280 -12 2 967 465 97 0 0 chr6 50199475 50199547 -99317490 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 967 450 294 163 61 chr6 50199978 50200224 -99316813 + B4 SINE B4 1 271 -21 2 967 360 0 0 0 chr6 50200253 50200293 -99316744 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 967 252 0 0 0 chr6 50200293 50200320 -99316717 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 967 317 62 21 0 chr6 50200320 50200368 -99316669 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 120 2630 117 38 40 chr6 50200387 50200832 -99316205 - RMER4A LTR ERVK -22 444 1 3 968 243 239 279 18 chr6 50201801 50201912 -99315125 + B1F2 SINE Alu 1 140 -9 3 968 509 257 7 33 chr6 50202007 50202160 -99314877 - B1F SINE Alu 0 149 1 3 968 282 284 12 0 chr6 50202466 50202547 -99314490 + MER2B DNA MER2_type 179 260 -76 3 968 4890 58 8 2 chr6 50203578 50204194 -99312843 + L1_Mus1 LINE L1 5948 6567 0 3 968 569 245 133 36 chr6 50204226 50204421 -99312616 + B3 SINE B2 1 214 -2 3 968 455 243 44 8 chr6 50204589 50204725 -99312312 - PB1D10 SINE Alu 0 149 1 3 968 419 196 124 0 chr6 50205207 50205304 -99311733 + PB1D7 SINE Alu 2 110 -10 3 968 333 68 0 0 chr6 50205309 50205353 -99311684 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 968 468 0 0 0 chr6 50205353 50205405 -99311632 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 968 587 285 39 26 chr6 50205871 50206026 -99311011 + RSINE1 SINE B4 9 165 0 3 968 362 280 182 25 chr6 50206945 50207143 -99309894 - L1MC4a LINE L1 -1952 5930 5702 3 968 598 256 38 0 chr6 50207149 50207282 -99309755 + B1F SINE Alu 11 148 -1 3 968 256 243 0 13 chr6 50207482 50207557 -99309480 - L1MC4a LINE L1 -2399 5483 5410 3 968 293 140 18 0 chr6 50207656 50207713 -99309324 + (TTG)n Simple_repeat Simple_repeat 3 60 0 3 968 854 255 54 0 chr6 50207715 50207919 -99309118 - B3 SINE B2 -1 215 1 3 968 418 251 82 98 chr6 50207937 50207973 -99309064 - B2_Mm2 SINE B2 -2 193 159 3 968 185 65 32 0 chr6 50207973 50208004 -99309033 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 968 592 251 82 98 chr6 50208004 50208161 -99308876 - B3A SINE B2 -34 164 3 3 968 414 219 148 39 chr6 50208167 50208295 -99308742 - B1F SINE Alu -6 143 2 3 968 382 311 19 0 chr6 50208324 50208430 -99308607 - PB1D10 SINE Alu -8 109 2 3 968 1251 128 113 0 chr6 50208610 50208813 -99308224 + URR1A DNA MER1_type 1 226 0 3 968 466 359 29 0 chr6 50209526 50209696 -99307341 - MIRb SINE MIR 0 268 94 3 968 654 319 83 33 chr6 50209714 50210074 -99306963 + MER90a LTR ERV1 72 449 -165 3 968 319 306 8 59 chr6 50210497 50210615 -99306422 + PB1D10 SINE Alu 1 112 -5 3 968 230 308 37 28 chr6 50210652 50210759 -99306278 + PB1D10 SINE Alu 5 112 -5 3 968 237 258 83 31 chr6 50212677 50212773 -99304264 + L2a LINE L2 3321 3421 -5 3 968 356 212 62 124 chr6 50212775 50212904 -99304133 + RSINE1 SINE B4 11 131 -34 3 968 910 196 131 16 chr6 50213384 50213628 -99303409 + RMER20B LTR ERVK 128 399 -228 3 968 475 195 13 4 chr6 50213977 50214083 -99302954 + MLT1A1 LTR MaLR 280 388 -20 3 968 416 200 0 0 chr6 50214512 50214592 -99302445 - B3A SINE B2 -118 80 1 3 968 517 348 31 31 chr6 50214889 50215082 -99301955 - MLT1A0 LTR MaLR 0 555 363 3 968 587 309 243 17 chr6 50215098 50215386 -99301651 - MLT1A0 LTR MaLR -4 361 9 3 968 24 0 0 0 chr6 50215823 50215847 -99301190 + AT_rich Low_complexity Low_complexity 1 24 0 3 968 33317 73 12 5 chr6 50215858 50220890 -99296147 + L1Md_A LINE L1 515 5586 -297 3 968 8413 35 7 1 chr6 50220890 50221906 -99295131 + L1Md_A LINE L1 5587 6582 0 3 968 5194 89 8 8 chr6 50221908 50222629 -99294408 + L1Md_F2 LINE L1 5862 6582 0 3 968 646 296 105 20 chr6 50222687 50222782 -99294255 - B4A SINE B4 -22 270 160 3 968 252 0 0 0 chr6 50222782 50222810 -99294227 + (GCTG)n Simple_repeat Simple_repeat 3 30 0 3 968 646 296 105 20 chr6 50222810 50222962 -99294075 - B4A SINE B4 -133 159 2 3 968 291 130 43 0 chr6 50223277 50223323 -99293714 + MTB_Mm LTR MaLR 1 48 -359 3 968 1135 148 83 15 chr6 50223364 50223569 -99293468 + MTB_Mm LTR MaLR 185 403 -4 3 968 673 221 37 22 chr6 50223712 50223846 -99293191 + B1_Mur1 SINE Alu 12 147 -2 3 968 184 271 104 0 chr6 50225044 50225092 -99291945 + MIRb SINE MIR 114 166 -102 3 968 226 273 39 13 chr6 50225296 50225374 -99291663 + ID4 SINE ID 4 83 0 3 968 305 287 92 0 chr6 50225384 50225471 -99291566 + ID_B1 SINE B4 111 205 -19 3 968 647 294 91 8 chr6 50225471 50225735 -99291302 + B4A SINE B4 5 290 -2 3 968 283 237 29 58 chr6 50225735 50225838 -99291199 + B1F SINE Alu 50 149 0 3 968 327 250 155 10 chr6 50226264 50226361 -99290676 + PB1D10 SINE Alu 6 116 -1 3 968 21 36 0 0 chr6 50226618 50226646 -99290391 + AT_rich Low_complexity Low_complexity 1 28 0 3 968 450 284 7 7 chr6 50227342 50227484 -99289553 - ID_B1 SINE B4 -4 220 79 3 968 614 97 6 82 chr6 50227602 50227760 -99289277 + CT-rich Low_complexity Low_complexity 4 149 0 3 968 593 264 0 16 chr6 50227777 50227904 -99289133 - RSINE1 SINE B4 -38 127 3 3 968 335 208 69 0 chr6 50228430 50228531 -99288506 + ID_B1 SINE B4 109 216 -8 3 968 253 274 0 0 chr6 50228602 50228653 -99288384 + tRNA-Ala-GCY_ tRNA tRNA 6 56 -19 3 968 594 226 32 16 chr6 50228657 50228783 -99288254 + ID_B1 SINE B4 91 218 -6 3 968 3060 57 25 28 chr6 50228785 50229182 -99287855 + MTA_Mm LTR MaLR 1 396 0 3 968 280 228 278 65 chr6 50229231 50229479 -99287558 + L1MCa LINE L1 83 383 -6125 3 968 304 261 98 0 chr6 50229636 50229728 -99287309 + L1MCa LINE L1 408 508 -6000 3 968 659 267 15 46 chr6 50229729 50229925 -99287112 + B3A SINE B2 1 190 -8 3 968 400 287 91 23 chr6 50230075 50230207 -99286830 + MER21B LTR ERV1 429 569 -294 3 968 370 281 90 38 chr6 50230552 50230641 -99286396 + L1MCa LINE L1 1260 1356 -5152 3 968 913 102 73 0 chr6 50230641 50230778 -99286259 + B1_Mus1 SINE Alu 1 147 -1 3 968 370 281 90 38 chr6 50230778 50230821 -99286216 + L1MCa LINE L1 1357 1399 -5109 3 968 236 0 88 0 chr6 50230980 50231014 -99286023 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 3 968 493 161 43 11 chr6 50231014 50231107 -99285930 - PB1D9 SINE Alu -13 107 12 3 968 788 275 105 68 chr6 50231107 50231458 -99285579 - MTE2a LTR MaLR -3 376 13 3 968 479 101 13 0 chr6 50231892 50231971 -99285066 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 968 434 305 193 22 chr6 50232013 50232194 -99284843 + B3A SINE B2 1 212 -4 3 968 551 250 19 65 chr6 50233205 50233359 -99283678 - ID_B1 SINE B4 0 224 78 3 968 217 330 63 18 chr6 50233353 50233464 -99283573 - BC1_Mm scRNA scRNA -32 120 5 3 968 583 257 157 65 chr6 50233577 50233839 -99283198 + MER2 DNA MER2_type 59 344 -1 3 968 21 0 0 0 chr6 50234252 50234273 -99282764 + AT_rich Low_complexity Low_complexity 1 21 0 3 968 453 50 0 0 chr6 50234273 50234333 -99282704 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 968 503 295 93 27 chr6 50234336 50234486 -99282551 - B3A SINE B2 -34 164 5 3 968 600 249 162 22 chr6 50234494 50234679 -99282358 - ID_B1 SINE B4 -9 215 5 3 968 968 297 119 9 chr6 50234957 50235277 -99281760 + ORR1E LTR MaLR 1 355 -4 3 968 530 226 17 0 chr6 50235693 50235808 -99281229 - PB1D9 SINE Alu -3 117 1 3 968 430 231 111 0 chr6 50236013 50236130 -99280907 + B1F SINE Alu 14 143 -6 3 968 470 240 0 10 chr6 50236662 50236763 -99280274 + ORR1E LTR MaLR 1 100 -259 3 968 2236 251 49 58 chr6 50236763 50237521 -99279516 - MTC-int LTR MaLR -543 715 25 3 968 1153 228 137 46 chr6 50237536 50237886 -99279151 - MTD LTR MaLR -36 383 2 3 968 215 308 0 30 chr6 50237888 50237955 -99279082 - PB1D10 SINE Alu -35 82 18 3 968 306 233 136 64 chr6 50237980 50238090 -99278947 - PB1D7 SINE Alu 0 120 3 3 968 30 27 0 0 chr6 50238167 50238204 -99278833 + AT_rich Low_complexity Low_complexity 1 37 0 3 968 456 281 82 98 chr6 50238209 50238597 -99278440 - ORR1E LTR MaLR 0 370 1 3 968 2515 140 16 0 chr6 50238990 50239375 -99277662 - ORR1B1 LTR MaLR -3 391 1 3 968 1952 114 26 10 chr6 50239375 50239677 -99277360 - ORR1B1-int LTR MaLR 0 1509 1203 3 968 318 234 16 0 chr6 50239675 50239739 -99277298 - ORR1B1-int LTR MaLR -545 964 900 3 968 1452 211 45 21 chr6 50239740 50240118 -99276919 - ORR1B1-int LTR MaLR -509 1000 614 3 968 1100 163 0 269 chr6 50239973 50240326 -99276711 - MT2B LTR ERVL -343 258 1 3 968 290 122 0 0 chr6 50240326 50240367 -99276670 - MERVL_2A-int LTR ERVL -1 5760 5720 3 968 240 191 95 0 chr6 50240369 50240432 -99276605 - ORR1B1-int LTR MaLR -1324 639 571 3 968 241 203 0 59 chr6 50240428 50240496 -99276541 - ORR1B1-int LTR MaLR -1333 630 567 3 968 2252 116 119 0 chr6 50240499 50240918 -99276119 - MERVL_2A-int LTR ERVL -136 5625 5157 3 968 1315 117 0 0 chr6 50240918 50241115 -99275922 - ORR1B1-int LTR MaLR -1312 197 1 3 968 338 106 0 0 chr6 50241119 50241166 -99275871 - ORR1B1 LTR MaLR -8 386 340 3 968 1040 39 8 0 chr6 50241186 50241315 -99275722 - B1_Mus1 SINE Alu 0 148 19 3 968 1050 82 0 0 chr6 50241516 50241662 -99275375 + (TC)n Simple_repeat Simple_repeat 1 146 0 3 968 294 29 0 0 chr6 50242299 50242334 -99274703 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 968 24 32 0 0 chr6 50246814 50246845 -99270192 + AT_rich Low_complexity Low_complexity 1 31 0 3 968 422 327 68 0 chr6 50248013 50248175 -99268862 + MER58A DNA MER1_type 50 222 -2 3 968 461 216 66 36 chr6 50248316 50248448 -99268589 - PB1D10 SINE Alu -2 147 1 3 968 354 317 42 15 chr6 50248448 50248487 -99268550 - ID_B1 SINE B4 -69 223 44 3 968 213 39 0 0 chr6 50248835 50248861 -99268176 + (ATTG)n Simple_repeat Simple_repeat 1 26 0 3 968 422 237 0 67 chr6 50248865 50248969 -99268068 - B1F SINE Alu -52 97 1 3 968 387 324 102 23 chr6 50249731 50250123 -99266914 - L1MC4a LINE L1 -1920 5962 5540 3 968 26 30 0 0 chr6 50250123 50250156 -99266881 + AT_rich Low_complexity Low_complexity 1 33 0 3 968 234 0 0 0 chr6 50250186 50250212 -99266825 + (T)n Simple_repeat Simple_repeat 1 26 0 3 968 249 353 59 0 chr6 50250510 50250612 -99266425 - MIRb SINE MIR -105 163 56 3 968 360 239 115 42 chr6 50251366 50251462 -99265575 + RSINE1 SINE B4 37 139 -26 3 968 210 71 0 0 chr6 50251485 50251513 -99265524 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 968 307 244 10 91 chr6 50253277 50253376 -99263661 + ID_B1 SINE B4 134 224 0 3 968 1362 248 179 9 chr6 50253421 50254087 -99262950 - L1MA8 LINE L1 0 6291 5494 3 968 444 19 0 0 chr6 50254287 50254340 -99262697 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 968 394 311 42 8 chr6 50254340 50254460 -99262577 - RSINE1 SINE B4 -26 139 16 4 968 225 278 152 91 chr6 50254486 50254585 -99262452 - PB1D10 SINE Alu -6 111 7 4 968 466 237 37 7 chr6 50254655 50254791 -99262246 - L1MA8 LINE L1 -1193 4950 4811 3 968 181 98 49 0 chr6 50254825 50254866 -99262171 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 4 968 248 295 16 0 chr6 50255872 50255933 -99261104 + ID_B1 SINE B4 79 140 -84 4 968 319 301 83 46 chr6 50255879 50255987 -99261050 + PB1D7 SINE Alu 5 116 -11 4 968 309 109 0 0 chr6 50256582 50256637 -99260400 + (CAGA)n Simple_repeat Simple_repeat 1 55 0 4 968 199 333 0 0 chr6 50256933 50256990 -99260047 - L2 LINE L2 -500 2919 2863 4 968 3044 161 46 25 chr6 50256997 50257467 -99259570 + RLTR20A2 LTR ERVK 1 480 -98 4 968 711 65 0 0 chr6 50257467 50257560 -99259477 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 968 3044 161 46 25 chr6 50257560 50257655 -99259382 + RLTR20A2 LTR ERVK 481 578 0 4 968 414 311 0 0 chr6 50257750 50257853 -99259184 - PB1D10 SINE Alu -14 103 1 4 968 961 291 7 7 chr6 50257854 50258138 -99258899 - L1MB3 LINE L1 -41 6142 5859 4 968 203 242 95 16 chr6 50258852 50258915 -99258122 - MIR SINE MIR -38 224 157 4 968 385 260 179 0 chr6 50260380 50260503 -99256534 + L1MB7 LINE L1 6032 6176 -8 4 968 668 244 83 37 chr6 50260579 50260903 -99256134 + L1MEc LINE L1 2024 2362 -4038 4 968 854 245 36 18 chr6 50261403 50261623 -99255414 + ID_B1 SINE B4 1 224 0 4 968 341 306 103 7 chr6 50261972 50262086 -99254951 + RSINE1 SINE B4 4 125 -40 4 968 204 40 0 0 chr6 50262086 50262111 -99254926 + (CACG)n Simple_repeat Simple_repeat 3 27 0 4 968 341 306 103 7 chr6 50262111 50262141 -99254896 + RSINE1 SINE B4 126 161 -4 4 968 1174 62 7 0 chr6 50262263 50262409 -99254628 - B1_Mus2 SINE Alu 0 147 1 4 968 879 88 0 7 chr6 50263061 50263199 -99253838 - L1Md_F2 LINE L1 0 6582 6446 4 968 230 306 111 105 chr6 50263334 50263524 -99253513 - B3A SINE B2 0 198 8 4 968 613 270 6 84 chr6 50263357 50263535 -99253502 - RSINE1 SINE B4 0 165 2 4 968 780 240 70 97 chr6 50263627 50263927 -99253110 + B4 SINE B4 1 292 0 4 968 1088 64 14 0 chr6 50265266 50265406 -99251631 + B1_Mus1 SINE Alu 5 146 -2 4 968 221 0 0 33 chr6 50265406 50265436 -99251601 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 968 387 232 207 44 chr6 50265560 50265695 -99251342 - RSINE1 SINE B4 -5 160 4 4 968 826 257 5 11 chr6 50266016 50266205 -99250832 + RMER1C Other Other 1137 1324 -18 4 968 277 320 126 0 chr6 50266227 50266330 -99250707 + L2a LINE L2 2631 2746 -673 4 968 369 258 45 0 chr6 50266658 50266747 -99250290 - PB1D10 SINE Alu 0 117 25 4 968 678 294 11 11 chr6 50266803 50266985 -99250052 + B3A SINE B2 1 182 -16 4 968 225 0 0 0 chr6 50267318 50267343 -99249694 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 968 416 222 40 10 chr6 50268585 50268685 -99248352 - B1F SINE Alu -1 148 46 4 968 290 269 67 9 chr6 50268747 50268852 -99248185 + PB1D7 SINE Alu 5 115 -5 4 968 333 293 34 52 chr6 50269228 50269387 -99247650 - MIR SINE MIR -93 183 23 4 968 199 310 10 130 chr6 50269449 50269549 -99247488 + L2a LINE L2 3319 3406 -20 4 968 219 114 0 0 chr6 50269781 50269816 -99247221 + (CTG)n Simple_repeat Simple_repeat 2 36 0 4 968 780 248 112 44 chr6 50270738 50270987 -99246050 - B4A SINE B4 0 292 27 4 968 826 222 31 0 chr6 50271096 50271290 -99245747 + B3 SINE B2 2 201 -15 4 968 282 267 136 45 chr6 50271528 50271638 -99245399 - PB1D7 SINE Alu 0 120 1 4 968 256 122 24 0 chr6 50271680 50271721 -99245316 - B1F SINE Alu -87 62 21 4 968 250 247 40 101 chr6 50271721 50271769 -99245268 - B4A SINE B4 -132 145 68 4 968 352 274 48 0 chr6 50273629 50273713 -99243324 - PB1D10 SINE Alu -19 98 11 4 968 365 335 74 21 chr6 50273843 50274032 -99243005 - L1ME4a LINE L1 -207 5917 5719 4 968 462 229 19 19 chr6 50274734 50274841 -99242196 - PB1D10 SINE Alu -9 108 2 4 968 224 368 130 14 chr6 50275489 50275627 -99241410 - MIR SINE MIR -96 166 13 4 968 1082 246 0 9 chr6 50275796 50276013 -99241024 - ID_B1 SINE B4 -1 223 9 4 968 210 190 0 23 chr6 50277043 50277086 -99239951 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 968 601 254 77 55 chr6 50277087 50277270 -99239767 + B4 SINE B4 100 286 -6 4 968 354 45 0 0 chr6 50277285 50277329 -99239708 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 968 773 99 32 13 chr6 50277647 50277801 -99239236 + (GGGAGA)n Simple_repeat Simple_repeat 4 160 0 4 968 239 114 45 0 chr6 50277801 50277845 -99239192 + GA-rich Low_complexity Low_complexity 4 49 0 4 968 181 182 36 0 chr6 50277921 50277976 -99239061 + GA-rich Low_complexity Low_complexity 4 60 0 4 968 234 0 0 0 chr6 50278192 50278218 -99238819 + (TTATA)n Simple_repeat Simple_repeat 4 29 0 4 968 234 91 0 0 chr6 50280119 50280152 -99236885 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 4 968 205 345 104 17 chr6 50280598 50280713 -99236324 + MIR SINE MIR 48 172 -90 4 968 21 36 0 0 chr6 50280826 50280854 -99236183 + AT_rich Low_complexity Low_complexity 1 28 0 4 968 343 283 93 9 chr6 50280874 50280981 -99236056 - B1F SINE Alu -1 148 33 4 968 1965 181 41 11 chr6 50281056 50281424 -99235613 - Lx5 LINE L1 0 7050 6672 4 968 511 279 68 0 chr6 50281668 50281815 -99235222 + RSINE1 SINE B4 5 161 -4 4 968 243 0 0 0 chr6 50281897 50281924 -99235113 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 968 315 0 0 0 chr6 50282552 50282587 -99234450 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 968 295 231 176 0 chr6 50284095 50284186 -99232851 - PB1D9 SINE Alu -12 108 2 4 968 1177 75 0 0 chr6 50284254 50284401 -99232636 + B1_Mus1 SINE Alu 1 147 -1 4 968 331 235 27 73 chr6 50284910 50285020 -99232017 + PB1D10 SINE Alu 13 117 0 4 968 301 256 189 85 chr6 50286771 50287019 -99230018 + L1MC4 LINE L1 7310 7583 -459 4 968 252 313 12 0 chr6 50287299 50287382 -99229655 + L1MC4 LINE L1 7956 8039 -3 4 968 412 322 102 81 chr6 50287533 50287781 -99229256 + B4 SINE B4 1 264 -28 4 968 270 0 0 0 chr6 50287781 50287811 -99229226 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 968 306 0 0 0 chr6 50287811 50287844 -99229193 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 968 412 322 102 81 chr6 50287844 50287878 -99229159 + B4 SINE B4 265 289 -3 4 968 356 346 109 22 chr6 50288404 50288587 -99228450 + MIR SINE MIR 63 261 -1 4 968 330 247 45 0 chr6 50288651 50288740 -99228297 + RMER1B Other Other 61 153 -913 4 968 1153 272 246 36 chr6 50288948 50289558 -99227479 + RMER1C Other Other 580 1317 -25 4 968 233 258 52 58 chr6 50290029 50290119 -99226918 + BC1_Mm scRNA scRNA 2 90 -62 4 968 396 0 0 0 chr6 50290228 50290272 -99226765 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 968 398 232 0 66 chr6 50290275 50290381 -99226656 - PB1D7 SINE Alu -10 110 12 4 968 221 226 15 75 chr6 50290330 50290397 -99226640 - B4A SINE B4 -148 144 82 4 968 2158 164 76 13 chr6 50290523 50290917 -99226120 + MTC LTR MaLR 3 421 0 4 968 209 214 0 23 chr6 50291957 50292000 -99225037 + (CATG)n Simple_repeat Simple_repeat 1 42 0 4 968 488 99 235 10 chr6 50292543 50292645 -99224392 + ORR1D1 LTR MaLR 1 125 -249 4 968 1044 298 101 92 chr6 50292649 50293462 -99223575 - L1MD2 LINE L1 -41 6318 5514 4 968 497 273 136 0 chr6 50293751 50293927 -99223110 - MER2 DNA MER2_type -115 230 31 4 968 1309 209 27 96 chr6 50294114 50294448 -99222589 + RMER5 LTR ERV1 1 311 -223 4 968 342 276 81 0 chr6 50294448 50294571 -99222466 - MER2 DNA MER2_type -127 218 86 4 968 1212 174 32 47 chr6 50294575 50294828 -99222209 + RMER5 LTR ERV1 286 534 0 4 968 183 80 0 0 chr6 50296118 50296143 -99220894 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 968 519 304 22 0 chr6 50296548 50296683 -99220354 - B4 SINE B4 -143 149 12 4 968 297 325 65 53 chr6 50296838 50297007 -99220030 + MER5B DNA MER1_type 1 171 -7 4 968 324 220 95 99 chr6 50296982 50297153 -99219884 + B3A SINE B2 11 215 -1 4 968 666 170 131 23 chr6 50298715 50298890 -99218147 - B2_Mm2 SINE B2 0 195 2 4 968 518 295 16 0 chr6 50299093 50299215 -99217822 - B1F SINE Alu -22 127 4 4 968 379 186 184 11 chr6 50299949 50300036 -99217001 + PB1D10 SINE Alu 1 102 -15 4 968 414 0 0 0 chr6 50300427 50300473 -99216564 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 968 33 90 0 0 chr6 50300479 50300568 -99216469 + AT_rich Low_complexity Low_complexity 1 89 0 4 968 399 271 9 11 chr6 50301662 50301774 -99215263 + PB1 SINE Alu 10 119 -8 4 968 183 273 23 0 chr6 50302156 50302200 -99214837 - MIR SINE MIR -117 145 101 4 968 613 291 10 50 chr6 50303535 50303750 -99213287 + B3A SINE B2 1 203 -13 4 968 252 332 91 77 chr6 50306024 50306233 -99210804 + MER20B DNA MER1_type 25 236 -547 4 968 467 291 43 36 chr6 50307501 50307640 -99209397 + RSINE1 SINE B4 4 143 -22 4 968 393 22 0 0 chr6 50308730 50308776 -99208261 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 968 254 246 0 71 chr6 50311163 50311233 -99205804 - MLT1C LTR MaLR -3 624 560 4 968 455 227 4 19 chr6 50311247 50311350 -99205687 - PB1D10 SINE Alu -8 109 9 4 968 415 337 101 42 chr6 50311361 50311739 -99205298 - MLT1C LTR MaLR -60 407 8 4 968 453 296 51 42 chr6 50312033 50312338 -99204699 - B4 SINE B4 -13 279 4 4 968 402 267 7 0 chr6 50312608 50312711 -99204326 - PB1D10 SINE Alu -40 107 1 4 968 609 14 0 0 chr6 50314073 50314143 -99202894 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 968 272 352 11 11 chr6 50314830 50314919 -99202118 + MER2 DNA MER2_type 256 344 -1 5 968 989 233 43 47 chr6 50315004 50315035 -99202002 - B4 SINE B4 -10 282 259 5 968 5842 105 28 7 chr6 50315035 50315904 -99201133 + RMER17D LTR ERVK 1 887 -2 5 968 989 233 43 47 chr6 50315904 50316106 -99200931 - B4 SINE B4 -34 258 50 5 968 558 246 36 57 chr6 50316135 50316329 -99200708 + L1MA9 LINE L1 6123 6312 0 5 968 1273 226 152 16 chr6 50317163 50317532 -99199505 - MTD LTR MaLR 0 419 1 5 968 396 0 0 0 chr6 50317541 50317585 -99199452 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 968 1649 246 52 22 chr6 50318152 50318559 -99198478 - MTD LTR MaLR 0 419 1 5 968 334 263 208 44 chr6 50318578 50318797 -99198240 + B4 SINE B4 37 288 -4 5 968 730 274 24 14 chr6 50319566 50319777 -99197260 + B3 SINE B2 1 213 -3 5 968 29 0 0 0 chr6 50320358 50320387 -99196650 + AT_rich Low_complexity Low_complexity 1 29 0 5 968 1584 298 70 7 chr6 50320753 50321338 -99195699 + L1MB5 LINE L1 5505 6126 -48 5 968 216 0 0 0 chr6 50321514 50321538 -99195499 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 5 968 231 292 61 20 chr6 50321685 50321783 -99195254 - MIRb SINE MIR -110 158 57 5 968 306 0 0 0 chr6 50321935 50321969 -99195068 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 5 968 529 262 75 7 chr6 50322485 50322631 -99194406 + ORR1D2 LTR MaLR 32 187 -183 5 968 357 24 0 0 chr6 50322631 50322673 -99194364 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 968 834 202 104 0 chr6 50322681 50322864 -99194173 + ORR1D2 LTR MaLR 169 370 0 5 968 297 0 0 0 chr6 50323141 50323174 -99193863 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 968 418 266 18 0 chr6 50324122 50324231 -99192806 + PB1D10 SINE Alu 1 111 -6 5 968 1388 99 11 0 chr6 50324241 50324432 -99192605 + B2_Mm2 SINE B2 2 194 -1 5 968 180 0 0 0 chr6 50325172 50325192 -99191845 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 968 637 268 29 76 chr6 50325192 50325402 -99191635 - B3 SINE B2 -16 200 1 5 968 327 297 78 0 chr6 50326369 50326497 -99190540 + MER5A DNA MER1_type 51 188 -1 5 968 207 91 73 0 chr6 50326751 50326806 -99190231 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 5 968 839 106 22 15 chr6 50326810 50326944 -99190093 - ORR1C1 LTR MaLR -243 135 1 5 968 580 307 178 5 chr6 50327900 50328283 -99188754 - L1MB1 LINE L1 -1 6167 5719 5 968 189 364 39 55 chr6 50329515 50329643 -99187394 - L3 LINE CR1 -2219 2270 2145 5 968 1478 83 5 0 chr6 50330145 50330337 -99186700 + B2_Mm1a SINE B2 1 193 0 5 968 288 0 0 0 chr6 50330877 50330909 -99186128 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 5 968 238 300 64 0 chr6 50330955 50331065 -99185972 + PB1D10 SINE Alu 1 117 0 5 968 513 281 149 4 chr6 50331095 50331330 -99185707 + B4A SINE B4 24 292 0 5 969 234 0 0 0 chr6 50331653 50331679 -99185358 + (A)n Simple_repeat Simple_repeat 1 26 0 5 969 204 301 31 41 chr6 50331726 50331823 -99185214 + MER5B DNA MER1_type 7 102 -76 5 969 324 218 111 25 chr6 50332927 50333038 -99183999 - PB1D10 SINE Alu -29 120 5 5 969 353 294 128 24 chr6 50333289 50333502 -99183535 - ORR1E LTR MaLR -138 232 4 5 969 261 300 94 45 chr6 50333502 50333733 -99183304 + MLT1G LTR MaLR 264 512 -67 5 969 349 264 73 28 chr6 50333879 50333988 -99183049 - PB1D10 SINE Alu -3 114 1 5 969 287 253 261 11 chr6 50334010 50334098 -99182939 + PB1D10 SINE Alu 3 112 -5 5 969 1022 274 49 89 chr6 50334285 50334654 -99182383 - ORR1E LTR MaLR -5 354 1 5 969 760 259 5 72 chr6 50336323 50336544 -99180493 + ID_B1 SINE B4 14 219 -5 5 969 1016 73 0 14 chr6 50336642 50336781 -99180256 + B2_Mm2 SINE B2 1 137 -58 5 969 189 94 0 0 chr6 50336928 50336960 -99180077 + (T)n Simple_repeat Simple_repeat 1 32 0 5 969 1104 76 7 0 chr6 50336960 50337105 -99179932 - B1_Mus2 SINE Alu 0 147 2 5 969 24 0 0 0 chr6 50337226 50337250 -99179787 + AT_rich Low_complexity Low_complexity 1 24 0 5 969 235 94 0 0 chr6 50338112 50338144 -99178893 - MT2B LTR ERVL -2 491 460 5 969 802 223 136 0 chr6 50338152 50338336 -99178701 + B3 SINE B2 7 215 -1 5 969 253 225 36 48 chr6 50338340 50338424 -99178613 + RLTR25B LTR ERVK 427 509 -519 5 969 685 69 19 38 chr6 50338359 50338465 -99178572 + B1_Mus2 SINE Alu 43 146 -1 5 969 261 0 0 0 chr6 50338465 50338494 -99178543 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 5 969 1085 225 46 133 chr6 50338497 50338939 -99178098 - MT2B LTR ERVL -20 581 6 5 969 2069 98 172 6 chr6 50338944 50339282 -99177755 - ORR1B1 LTR MaLR 0 394 1 5 969 440 284 42 21 chr6 50339693 50339837 -99177200 + B1F1 SINE Alu 3 149 0 5 969 1248 254 34 52 chr6 50341069 50341455 -99175582 + MTEa LTR MaLR 1 379 0 5 969 1261 14 0 14 chr6 50341524 50341671 -99175366 + B1_Mus2 SINE Alu 1 145 -2 5 969 243 103 0 0 chr6 50342329 50342368 -99174669 + (T)n Simple_repeat Simple_repeat 1 39 0 5 969 1268 41 0 0 chr6 50342368 50342515 -99174522 - B1_Mm SINE Alu 0 147 1 5 969 32 0 0 0 chr6 50342679 50342711 -99174326 + AT_rich Low_complexity Low_complexity 1 32 0 5 969 568 265 83 36 chr6 50342711 50342818 -99174219 + L1M4 LINE L1 4945 5074 -1072 5 969 1334 201 203 3 chr6 50342818 50343138 -99173899 - ORR1C2 LTR MaLR 0 384 1 5 969 568 263 101 46 chr6 50343138 50343359 -99173678 + L1M4 LINE L1 5075 5296 -850 5 969 309 300 101 79 chr6 50343391 50343765 -99173272 + L1M4 LINE L1 5356 5736 -442 5 969 295 292 0 0 chr6 50345010 50345075 -99171962 - MTEa LTR MaLR 0 379 315 5 969 236 222 55 18 chr6 50345217 50345272 -99171765 - MTD LTR MaLR -356 63 7 5 969 429 20 0 0 chr6 50346479 50346529 -99170508 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 969 315 0 0 0 chr6 50346604 50346639 -99170398 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 969 1133 210 8 80 chr6 50347083 50347332 -99169705 + MTD LTR MaLR 2 232 -187 5 969 301 247 22 0 chr6 50347375 50347464 -99169573 + MTD LTR MaLR 329 419 0 5 969 288 232 0 0 chr6 50347685 50347741 -99169296 - tRNA-Ala-GCY_ tRNA tRNA -9 66 11 5 969 641 127 0 38 chr6 50347749 50347855 -99169182 - ID_B1 SINE B4 -18 206 105 5 969 224 254 36 0 chr6 50348288 50348343 -99168694 + (CACG)n Simple_repeat Simple_repeat 4 60 0 5 969 459 244 28 71 chr6 50349432 50349573 -99167464 - B4A SINE B4 -156 136 2 5 969 207 0 0 0 chr6 50349822 50349845 -99167192 + (G)n Simple_repeat Simple_repeat 1 23 0 5 969 239 278 99 11 chr6 50350582 50350673 -99166364 + MER113 DNA MER1_type 156 254 -267 5 969 229 253 41 71 chr6 50350943 50351041 -99165996 - L1M5 LINE L1 -536 5626 5532 5 969 553 227 75 8 chr6 50351331 50351464 -99165573 + RSINE1 SINE B4 3 144 -21 5 969 304 340 19 0 chr6 50352670 50352776 -99164261 - PB1D10 SINE Alu -9 108 1 5 969 459 298 102 44 chr6 50353303 50353528 -99163509 + MLT1D LTR MaLR 9 246 -259 5 969 241 259 86 0 chr6 50353745 50353803 -99163234 + PB1D10 SINE Alu 49 111 -6 5 969 985 337 31 25 chr6 50354323 50354679 -99162358 + MLT1A0 LTR MaLR 1 358 -7 5 969 315 222 144 64 chr6 50355538 50355645 -99161392 + RSINE1 SINE B4 3 123 -42 5 969 297 0 0 0 chr6 50355645 50355678 -99161359 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 969 315 222 144 64 chr6 50355678 50355695 -99161342 + RSINE1 SINE B4 124 137 -28 5 969 336 135 0 0 chr6 50355695 50355769 -99161268 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 969 304 109 43 0 chr6 50355952 50355998 -99161039 + HAL1-3A_ME LINE L1 1965 2012 -846 5 969 22 0 0 0 chr6 50357137 50357159 -99159878 + AT_rich Low_complexity Low_complexity 1 22 0 5 969 1295 186 116 45 chr6 50357171 50357526 -99159511 + RMER10A LTR ERVL 1 380 -62 5 969 282 252 70 8 chr6 50357805 50357933 -99159104 + B1F1 SINE Alu 5 140 -9 5 969 3076 20 3 0 chr6 50358866 50359211 -99157826 + ORR1A0 LTR MaLR 1 346 0 5 969 189 0 0 0 chr6 50359863 50359884 -99157153 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 5 969 556 288 49 6 chr6 50360016 50360180 -99156857 + MLT1A0 LTR MaLR 188 358 -7 5 969 486 0 0 0 chr6 50360460 50360514 -99156523 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 969 284 203 27 0 chr6 50361111 50361185 -99155852 + (TATG)n Simple_repeat Simple_repeat 4 79 0 5 969 1360 72 33 6 chr6 50361759 50361941 -99155096 + B2_Mm2 SINE B2 2 188 -7 5 969 1176 193 62 33 chr6 50362826 50363350 -99153687 + RMER10A LTR ERVL 1 442 0 5 969 289 292 28 0 chr6 50363350 50363422 -99153615 + ID4_ SINE ID 8 81 -2 5 969 22 35 0 0 chr6 50363426 50363455 -99153582 + AT_rich Low_complexity Low_complexity 1 29 0 5 969 189 0 0 0 chr6 50363679 50363700 -99153337 + (A)n Simple_repeat Simple_repeat 1 21 0 5 969 901 157 212 6 chr6 50366056 50366235 -99150802 - B3 SINE B2 0 216 1 5 969 2168 102 9 58 chr6 50367502 50367845 -99149192 - ORR1A3 LTR MaLR 0 326 1 5 969 690 304 96 78 chr6 50368234 50368705 -99148332 - MLT1H1 LTR MaLR -15 540 66 5 969 313 245 109 132 chr6 50369818 50369992 -99147045 + LTR16E1 LTR ERVL 368 537 -1 5 969 239 284 15 0 chr6 50370693 50370760 -99146277 - ID4_ SINE ID -14 69 2 5 969 369 0 0 0 chr6 50370868 50370909 -99146128 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 969 768 198 150 27 chr6 50371204 50371391 -99145646 + B3 SINE B2 2 211 -5 5 969 3651 29 33 2 chr6 50372188 50372611 -99144426 + RLTR10C LTR ERVK 1 436 0 5 969 195 42 0 0 chr6 50373918 50373942 -99143095 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 5 969 548 269 214 76 chr6 50374567 50374885 -99142152 + ORR1E LTR MaLR 1 357 -13 6 969 988 220 85 11 chr6 50374885 50375200 -99141837 + ORR1D2 LTR MaLR 1 373 -1 6 969 565 217 221 64 chr6 50375219 50375339 -99141698 + URR1B DNA MER1_type 24 173 -52 6 969 1170 58 0 0 chr6 50375339 50375477 -99141560 + B1_Mus1 SINE Alu 1 138 -10 6 969 387 0 0 0 chr6 50375477 50375520 -99141517 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 6 969 565 217 221 64 chr6 50375520 50375570 -99141467 + URR1B DNA MER1_type 174 221 -4 6 969 1014 174 6 0 chr6 50375817 50375978 -99141059 + B3 SINE B2 47 208 -8 6 969 384 215 25 0 chr6 50376130 50376209 -99140828 + B1_Mur1 SINE Alu 61 141 -8 6 969 247 324 109 67 chr6 50376787 50377025 -99140012 + L2a LINE L2 3031 3278 -148 6 969 1090 89 7 0 chr6 50379199 50379345 -99137692 - B1_Mus1 SINE Alu -1 147 1 6 969 556 248 52 87 chr6 50379345 50379370 -99137667 - B4 SINE B4 -67 224 60 6 969 547 196 7 0 chr6 50379868 50380006 -99137031 + Lx9 LINE L1 7506 7644 0 6 969 471 248 156 84 chr6 50380035 50380260 -99136777 + B4A SINE B4 11 251 -41 6 969 522 57 0 0 chr6 50380260 50380330 -99136707 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 969 240 282 122 40 chr6 50380364 50380512 -99136525 + RSINE1 SINE B4 6 165 0 6 969 807 223 30 13 chr6 50380942 50381146 -99135891 - B3A SINE B2 -14 202 2 6 969 438 319 14 0 chr6 50381797 50381941 -99135096 + L1ME3A LINE L1 6021 6166 -7 6 969 853 168 7 26 chr6 50382195 50382348 -99134689 + B1_Mur4 SINE Alu 1 150 0 6 969 236 213 0 0 chr6 50382348 50382395 -99134642 + A-rich Low_complexity Low_complexity 1 47 0 6 969 205 195 0 0 chr6 50382826 50382867 -99134170 + A-rich Low_complexity Low_complexity 1 41 0 6 969 480 132 168 8 chr6 50383816 50383916 -99133121 - B1_Mus2 SINE Alu -16 131 27 6 969 42 0 0 0 chr6 50384076 50384118 -99132919 + AT_rich Low_complexity Low_complexity 1 42 0 6 969 621 167 302 0 chr6 50384238 50384400 -99132637 + B3 SINE B2 1 211 -5 6 969 617 281 40 123 chr6 50385151 50385525 -99131512 + L1MC3 LINE L1 6806 7148 -637 6 969 292 319 430 14 chr6 50385671 50385882 -99131155 + MLT1A1 LTR MaLR 73 371 -37 6 969 858 293 44 16 chr6 50385919 50386169 -99130868 - B4A SINE B4 -22 270 14 6 969 768 210 87 29 chr6 50386192 50386364 -99130673 + B3 SINE B2 30 211 -5 6 969 26 0 0 0 chr6 50386364 50386390 -99130647 + AT_rich Low_complexity Low_complexity 1 26 0 6 969 444 289 212 4 chr6 50386415 50386651 -99130386 + L1MC3 LINE L1 7455 7739 -46 6 969 1916 196 48 39 chr6 50386920 50387335 -99129702 - MTD LTR MaLR 0 419 1 6 969 355 127 0 0 chr6 50387525 50387580 -99129457 - RMER15 LTR ERVL -518 57 3 6 969 2832 186 95 49 chr6 50387581 50388214 -99128823 - RMER15-int LTR ERVL -25 4974 4313 6 969 2136 233 50 14 chr6 50388228 50388323 -99128714 - RMER15-int LTR ERVL -2850 2149 2058 6 969 4610 62 7 10 chr6 50388323 50388909 -99128128 + MT2B2 LTR ERVL 1 584 0 6 969 2111 233 50 14 chr6 50388909 50389318 -99127719 - RMER15-int LTR ERVL -2942 2057 1627 6 969 2753 224 129 16 chr6 50389401 50390068 -99126969 - RMER15-int LTR ERVL -3517 1482 741 6 969 2460 238 71 10 chr6 50390041 50390631 -99126406 - RMER15-int LTR ERVL -4373 626 1 6 969 2196 144 52 94 chr6 50390639 50391137 -99125900 - RMER15 LTR ERVL -98 477 1 6 969 587 217 25 8 chr6 50392195 50392316 -99124721 + B1_Mur1 SINE Alu 2 124 -25 6 969 1490 50 39 0 chr6 50394050 50394232 -99122805 + B2_Mm2 SINE B2 1 189 -6 6 969 929 149 0 7 chr6 50394679 50394828 -99122209 + B1_Mus1 SINE Alu 1 148 0 6 969 1733 199 23 6 chr6 50395143 50395497 -99121540 + MTEa LTR MaLR 8 367 -12 6 969 224 328 153 0 chr6 50395940 50396071 -99120966 + L2b LINE L2 3224 3374 -1 6 969 3429 39 50 2 chr6 50396227 50396432 -99120605 - RLTR10C LTR ERVK 0 436 233 6 969 198 0 0 0 chr6 50396432 50396454 -99120583 + (TC)n Simple_repeat Simple_repeat 2 23 0 6 969 3429 39 50 2 chr6 50396454 50396664 -99120373 - RLTR10C LTR ERVK -204 232 2 6 969 29 0 0 0 chr6 50396857 50396886 -99120151 + AT_rich Low_complexity Low_complexity 1 29 0 6 969 216 0 0 0 chr6 50397212 50397236 -99119801 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 6 969 784 195 0 75 chr6 50397613 50397774 -99119263 + B1_Mur3 SINE Alu 1 149 0 6 969 207 0 0 0 chr6 50397800 50397823 -99119214 + (A)n Simple_repeat Simple_repeat 1 23 0 6 969 225 239 102 0 chr6 50397834 50397922 -99119115 - MER33 DNA MER1_type 0 324 228 6 969 909 141 0 0 chr6 50397979 50398121 -99118916 + B1_Mur4 SINE Alu 9 150 0 6 969 315 0 0 0 chr6 50398121 50398156 -99118881 + (A)n Simple_repeat Simple_repeat 1 35 0 6 969 384 226 49 172 chr6 50398158 50398361 -99118676 - MER33 DNA MER1_type -146 178 1 6 969 379 111 0 0 chr6 50398837 50398891 -99118146 - PB1D9 SINE Alu -48 72 19 6 969 344 283 354 8 chr6 50398907 50399177 -99117860 + L1MB8 LINE L1 5794 6154 -24 6 969 991 158 121 32 chr6 50399199 50399496 -99117541 - ORR1B2 LTR MaLR -8 321 1 6 969 354 45 0 0 chr6 50399814 50399858 -99117179 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 969 324 0 0 0 chr6 50399858 50399893 -99117144 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 969 346 209 0 0 chr6 50400078 50400145 -99116892 - B4 SINE B4 -216 76 10 6 969 2699 155 34 32 chr6 50400197 50400723 -99116314 - RLTR11A2 LTR ERVK 0 527 1 6 969 307 234 77 86 chr6 50400921 50401038 -99115999 + PB1D10 SINE Alu 2 117 0 6 969 933 172 0 0 chr6 50401363 50401543 -99115494 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 969 347 263 42 8 chr6 50401758 50401877 -99115160 + ID_B1 SINE B4 78 200 -24 6 969 472 170 38 0 chr6 50401773 50401879 -99115158 + B1_Mur1 SINE Alu 15 124 -25 6 969 2094 110 3 76 chr6 50401983 50402338 -99114699 + ORR1A4 LTR MaLR 1 329 0 6 969 21 0 0 0 chr6 50404113 50404134 -99112903 + GC_rich Low_complexity Low_complexity 1 21 0 6 969 22 35 0 0 chr6 50404157 50404186 -99112851 + AT_rich Low_complexity Low_complexity 1 29 0 6 969 271 258 32 143 chr6 50404290 50404373 -99112664 + RSINE1 SINE B4 23 98 -67 6 969 279 0 0 0 chr6 50404373 50404404 -99112633 + (GGGAGA)n Simple_repeat Simple_repeat 6 36 0 6 969 271 258 32 143 chr6 50404404 50404474 -99112563 + RSINE1 SINE B4 99 159 -6 6 969 203 228 51 34 chr6 50406378 50406437 -99110600 + L2a LINE L2 3361 3420 -6 6 969 333 0 0 0 chr6 50406688 50406725 -99110312 + (TTG)n Simple_repeat Simple_repeat 2 38 0 6 969 220 245 43 31 chr6 50406964 50407062 -99109975 - L2a LINE L2 -94 3332 3239 6 969 232 274 27 14 chr6 50407797 50407871 -99109166 + RMER30 DNA MER1_type 2 76 -126 6 969 867 70 0 0 chr6 50408450 50408565 -99108472 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 6 969 733 227 52 0 chr6 50408583 50408737 -99108300 - RSINE1 SINE B4 0 165 4 6 969 248 258 163 39 chr6 50409030 50409159 -99107878 - MER20 DNA MER1_type -23 196 52 6 969 249 345 55 0 chr6 50409537 50409682 -99107355 - MER117 DNA MER1_type -22 175 23 6 969 251 224 12 84 chr6 50409732 50409815 -99107222 + B1_Mur1 SINE Alu 66 142 -7 6 969 237 33 0 0 chr6 50409815 50409845 -99107192 + (GGA)n Simple_repeat Simple_repeat 2 31 0 6 969 227 292 56 0 chr6 50411095 50411167 -99105870 + ID4_ SINE ID 3 78 -5 6 969 234 0 0 0 chr6 50411200 50411226 -99105811 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 969 297 274 14 0 chr6 50411294 50411367 -99105670 - RSINE1 SINE B4 -14 151 78 6 969 264 372 7 87 chr6 50411432 50411582 -99105455 - B4 SINE B4 -153 139 2 6 969 432 111 0 0 chr6 50411584 50411665 -99105372 + (TTCC)n Simple_repeat Simple_repeat 1 81 0 6 969 808 198 61 5 chr6 50411671 50411869 -99105168 + ORR1D1 LTR MaLR 166 374 0 6 969 3479 32 2 125 chr6 50412650 50413147 -99103890 + RLTR10C LTR ERVK 1 436 0 6 969 1210 120 130 0 chr6 50413590 50413790 -99103247 + URR1A DNA MER1_type 1 226 0 6 969 1320 60 16 0 chr6 50413809 50413992 -99103045 + B2_Mm2 SINE B2 7 192 -3 6 969 287 218 55 82 chr6 50414120 50414230 -99102807 + PB1D10 SINE Alu 3 109 -8 6 969 881 209 19 42 chr6 50414773 50414988 -99102049 - B3 SINE B2 -5 211 2 6 969 5336 128 126 39 chr6 50415249 50415464 -99101573 - RMER12 LTR ERVK -109 1213 890 6 969 354 91 0 0 chr6 50415464 50415519 -99101518 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 969 5336 128 126 39 chr6 50415519 50416418 -99100619 - RMER12 LTR ERVK -433 889 2 6 969 285 29 0 0 chr6 50416778 50416812 -99100225 + (TTG)n Simple_repeat Simple_repeat 3 36 0 6 969 369 320 77 6 chr6 50417178 50417360 -99099677 - MLT1L LTR MaLR -18 592 398 6 969 422 263 128 6 chr6 50417672 50417852 -99099185 - MER68 LTR ERVL -361 202 1 6 969 294 221 79 34 chr6 50418343 50418432 -99098605 + MLT1A1 LTR MaLR 316 408 0 6 969 256 300 144 0 chr6 50418533 50418623 -99098414 - RSINE1 SINE B4 -25 140 38 6 969 773 211 7 0 chr6 50418663 50418810 -99098227 + B1_Mur1 SINE Alu 2 149 0 6 969 336 232 128 32 chr6 50418799 50418955 -99098082 - MER33 DNA MER1_type -69 255 85 6 969 21 0 0 0 chr6 50419430 50419451 -99097586 + AT_rich Low_complexity Low_complexity 1 21 0 6 969 596 271 24 48 chr6 50419951 50420118 -99096919 + RSINE1 SINE B4 3 165 0 6 969 507 259 14 0 chr6 50420248 50420387 -99096650 + RSINE1 SINE B4 24 164 -1 6 969 253 252 42 20 chr6 50421207 50421325 -99095712 - MIRc SINE MIR -112 156 40 6 969 960 126 11 6 chr6 50421589 50421764 -99095273 + (TTCC)n Simple_repeat Simple_repeat 2 177 0 6 969 360 250 34 0 chr6 50421783 50421871 -99095166 - PB1D10 SINE Alu -15 102 12 6 969 4214 161 92 10 chr6 50422324 50423146 -99093891 + RMER19B LTR ERVK 1 890 -12 6 969 405 202 16 0 chr6 50423569 50423659 -99093378 + RMER20B LTR ERVK 4 95 -532 6 969 1001 228 133 41 chr6 50423662 50423977 -99093060 - ORR1D1 LTR MaLR -16 358 15 6 969 2955 107 44 0 chr6 50424078 50424490 -99092547 - RLTR23 LTR ERV1 0 430 1 6 969 573 86 0 0 chr6 50424603 50424696 -99092341 + (CAGAGA)n Simple_repeat Simple_repeat 4 96 0 7 969 249 315 239 0 chr6 50424702 50424832 -99092205 - MLT1F2 LTR MaLR -373 187 27 7 969 376 211 9 19 chr6 50425126 50425232 -99091805 + MER33 DNA MER1_type 183 287 -37 7 969 572 238 22 75 chr6 50426577 50426804 -99090233 - RCHARR1 DNA MER1_type -349 625 411 7 969 763 205 0 13 chr6 50426947 50427105 -99089932 - RCHARR1 DNA MER1_type -816 158 3 7 969 283 312 21 10 chr6 50427110 50427207 -99089830 + Lx9 LINE L1 5861 5958 -1686 7 969 1119 228 74 39 chr6 50427290 50427627 -99089410 + ORR1E LTR MaLR 1 349 -10 7 969 234 333 75 20 chr6 50427693 50427840 -99089197 + Lx8 LINE L1 6097 6251 -1222 7 969 735 269 121 32 chr6 50427881 50428219 -99088818 - ORR1D2 LTR MaLR -2 368 1 7 969 264 231 0 0 chr6 50428844 50428896 -99088141 + MLT2B4 LTR ERVL 42 93 -463 7 969 211 237 42 31 chr6 50428903 50428999 -99088038 + (GTTTG)n Simple_repeat Simple_repeat 3 99 0 7 969 461 284 49 11 chr6 50429399 50429584 -99087453 + Charlie1a DNA MER1_type 1257 1448 -7 7 969 353 280 18 18 chr6 50429718 50429827 -99087210 + MLT2D LTR ERVL 7 115 -441 7 969 247 315 76 0 chr6 50429881 50429973 -99087064 - PB1D10 SINE Alu -1 116 18 7 969 815 269 50 60 chr6 50429975 50430292 -99086745 + MLT2D LTR ERVL 88 401 -13 7 969 267 246 43 58 chr6 50430316 50430454 -99086583 + Lx9 LINE L1 7473 7608 -36 7 969 31 58 0 0 chr6 50430514 50430566 -99086471 + AT_rich Low_complexity Low_complexity 1 52 0 7 969 234 0 0 0 chr6 50431319 50431345 -99085692 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 969 673 295 75 0 chr6 50431345 50431518 -99085519 - B3 SINE B2 -30 186 1 7 969 396 310 0 17 chr6 50431689 50431807 -99085230 + PB1D10 SINE Alu 1 116 -1 7 969 1040 214 58 21 chr6 50432322 50432652 -99084385 + RLTR15 LTR ERVK 1 342 -17 7 969 937 265 77 8 chr6 50432694 50432941 -99084096 - B4A SINE B4 -4 288 25 7 969 207 0 0 0 chr6 50433243 50433266 -99083771 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 969 1217 206 159 39 chr6 50433437 50433801 -99083236 - MTD LTR MaLR 0 419 12 7 969 219 103 0 0 chr6 50433807 50433846 -99083191 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 969 724 180 32 87 chr6 50433857 50433991 -99083046 - MTD-int LTR MaLR -3 1255 1120 7 969 1281 83 72 6 chr6 50433991 50434172 -99082865 + B2_Mm2 SINE B2 2 194 -1 7 969 724 180 32 87 chr6 50434172 50434256 -99082781 - MTD-int LTR MaLR -139 1119 1049 7 969 572 190 147 23 chr6 50434316 50434445 -99082592 - B1_Mur4 SINE Alu 0 150 6 7 969 3332 222 90 45 chr6 50434454 50435473 -99081564 - MTD-int LTR MaLR -192 1066 2 7 969 1186 219 117 10 chr6 50435484 50435784 -99081253 - MTD LTR MaLR -15 404 73 7 969 281 292 90 27 chr6 50436077 50436310 -99080727 + L1M5 LINE L1 5561 5818 -422 7 969 424 363 14 8 chr6 50436528 50436732 -99080305 + L1M5 LINE L1 5480 5681 -2201 7 969 2708 163 14 6 chr6 50436750 50437251 -99079786 - RLTR16 LTR ERVK 0 505 1 7 969 574 284 96 19 chr6 50437344 50437667 -99079370 + MLT1A LTR MaLR 11 358 -16 7 969 2366 153 47 17 chr6 50437801 50438206 -99078831 - MTC LTR MaLR -4 417 1 7 969 531 238 32 0 chr6 50438220 50438346 -99078691 - RSINE1 SINE B4 -35 130 1 7 969 303 284 10 21 chr6 50438443 50438540 -99078497 - HAL1-3A_ME LINE L1 -788 2070 1975 7 969 404 82 0 16 chr6 50438540 50438602 -99078435 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 969 237 178 0 0 chr6 50439830 50439875 -99077162 + GA-rich Low_complexity Low_complexity 3 47 0 7 969 185 83 0 27 chr6 50440032 50440069 -99076968 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 969 517 143 135 56 chr6 50440211 50440337 -99076700 + B1_Mur2 SINE Alu 2 137 -12 7 969 593 27 13 0 chr6 50440339 50440414 -99076623 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 7 969 1609 120 334 28 chr6 50441152 50441488 -99075549 + RLTR20C LTR ERVK 1 432 -102 7 969 396 0 0 0 chr6 50441488 50441532 -99075505 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 969 1609 142 62 39 chr6 50441532 50441624 -99075413 + RLTR20C LTR ERVK 433 533 -1 7 969 397 205 13 0 chr6 50441895 50441973 -99075064 + ID_B1 SINE B4 91 169 -55 7 969 338 289 41 0 chr6 50441973 50441992 -99075045 + PB1D10 SINE Alu 10 110 -7 7 969 910 73 15 0 chr6 50441998 50442134 -99074903 + (CA)n Simple_repeat Simple_repeat 1 138 0 7 969 474 18 0 0 chr6 50442134 50442188 -99074849 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 969 24 32 0 0 chr6 50442257 50442288 -99074749 + AT_rich Low_complexity Low_complexity 1 31 0 7 969 300 261 76 0 chr6 50443487 50443579 -99073458 - LTR33A_ LTR ERVL -207 324 226 7 969 192 149 0 0 chr6 50444146 50444193 -99072844 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 7 969 2241 128 54 30 chr6 50444483 50444854 -99072183 - ORR1C2 LTR MaLR -4 380 1 7 969 5668 186 154 18 chr6 50444854 50446181 -99070856 - ORR1C2-int LTR MaLR 0 1509 2 7 969 2125 167 18 61 chr6 50446207 50446573 -99070464 - ORR1C2 LTR MaLR -2 382 32 7 969 2449 32 0 0 chr6 50446573 50446854 -99070183 - L1_Mus1 LINE L1 0 6567 6287 7 969 2125 167 18 61 chr6 50446854 50446882 -99070155 - ORR1C2 LTR MaLR -353 31 5 7 969 878 241 176 7 chr6 50447235 50447524 -99069513 + Lx8 LINE L1 6918 7255 -218 7 969 724 284 47 73 chr6 50448465 50448739 -99068298 + MTD LTR MaLR 11 277 -142 7 969 1982 198 109 11 chr6 50448762 50449237 -99067800 - RLTR11A2 LTR ERVK -5 522 1 7 969 1310 214 106 35 chr6 50449496 50449629 -99067408 - ORR1D1 LTR MaLR 0 374 246 7 969 468 0 0 0 chr6 50449629 50449681 -99067356 + (CAGG)n Simple_repeat Simple_repeat 3 54 0 7 969 1310 214 106 35 chr6 50449681 50449895 -99067142 - ORR1D1 LTR MaLR -129 245 2 7 969 207 0 0 0 chr6 50450073 50450096 -99066941 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 969 1139 77 0 0 chr6 50450099 50450242 -99066795 - B1_Mus1 SINE Alu -5 143 1 7 969 404 287 89 51 chr6 50450242 50450400 -99066637 - MIR SINE MIR -16 246 83 7 969 330 259 24 0 chr6 50450457 50450542 -99066495 - HAL1-3A_ME LINE L1 -487 2371 2285 7 969 287 327 45 9 chr6 50450708 50450819 -99066218 - MER20B DNA MER1_type -633 150 36 7 969 250 348 57 14 chr6 50452087 50452227 -99064810 + L2c LINE L2 3232 3377 -10 7 969 302 321 0 0 chr6 50452233 50452314 -99064723 + CT-rich Low_complexity Low_complexity 3 83 0 7 969 2068 152 93 23 chr6 50452388 50452773 -99064264 - RLTR26 LTR ERVK 0 642 231 7 969 641 279 118 33 chr6 50452773 50452984 -99064053 - Lx7 LINE L1 -930 6766 6538 7 969 303 264 77 0 chr6 50452977 50453068 -99063969 + Lx8 LINE L1 6393 6490 -983 7 969 182 136 23 0 chr6 50453400 50453444 -99063593 + A-rich Low_complexity Low_complexity 4 48 0 7 969 325 272 87 0 chr6 50453505 50453608 -99063429 - PB1D10 SINE Alu -5 112 1 7 969 656 163 269 11 chr6 50454248 50454427 -99062610 - B3 SINE B2 0 216 14 7 969 23 54 0 0 chr6 50454709 50454746 -99062291 + AT_rich Low_complexity Low_complexity 1 37 0 7 969 399 231 27 30 chr6 50455257 50455404 -99061633 + Lx8 LINE L1 5773 5911 -1785 7 969 1862 197 63 28 chr6 50455538 50455918 -99061119 - MTD LTR MaLR -8 411 19 7 969 216 0 0 0 chr6 50455918 50455942 -99061095 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 969 1862 197 63 28 chr6 50455942 50455958 -99061079 - MTD LTR MaLR -401 18 2 7 969 288 321 68 15 chr6 50456309 50456442 -99060595 + B1F1 SINE Alu 2 141 -8 7 969 426 286 24 52 chr6 50456665 50456875 -99060162 - L1MC4a LINE L1 -91 7791 7588 7 969 357 261 65 0 chr6 50456875 50456967 -99060070 - RSINE1 SINE B4 -64 101 4 7 969 451 240 70 25 chr6 50456967 50457125 -99059912 - L1MC4a LINE L1 -321 7561 7397 7 969 329 295 16 39 chr6 50457321 50457448 -99059589 + Charlie5 DNA MER1_type 2401 2524 -100 7 969 829 146 0 0 chr6 50457438 50457561 -99059476 + B1_Mus1 SINE Alu 20 142 -6 7 969 489 255 149 18 chr6 50457631 50457799 -99059238 - B3A SINE B2 -4 194 5 7 969 655 179 7 7 chr6 50457836 50457977 -99059060 + CT-rich Low_complexity Low_complexity 4 144 0 7 969 699 12 0 0 chr6 50457977 50458057 -99058980 + (TTC)n Simple_repeat Simple_repeat 2 81 0 7 969 996 104 0 0 chr6 50458057 50458192 -99058845 - B1_Mus2 SINE Alu -12 135 1 7 969 309 109 0 0 chr6 50458227 50458282 -99058755 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 7 969 511 271 144 6 chr6 50458289 50458449 -99058588 - B3A SINE B2 -16 182 1 7 969 631 297 89 45 chr6 50458695 50459054 -99057983 - L1MB2 LINE L1 -243 5928 5554 7 969 25 0 0 0 chr6 50459573 50459598 -99057439 + AT_rich Low_complexity Low_complexity 1 25 0 7 969 731 65 28 0 chr6 50459780 50459888 -99057149 + (CACCAT)n Simple_repeat Simple_repeat 5 115 0 7 969 427 148 23 0 chr6 50460210 50460298 -99056739 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 7 969 225 289 70 30 chr6 50460802 50460902 -99056135 + MLT1A1 LTR MaLR 305 408 0 7 969 180 0 0 0 chr6 50461145 50461165 -99055872 + (A)n Simple_repeat Simple_repeat 1 20 0 7 969 1251 104 15 59 chr6 50461225 50461429 -99055608 - B2_Mm2 SINE B2 0 195 1 7 969 2000 95 33 132 chr6 50461711 50461811 -99055226 + ORR1A4 LTR MaLR 1 80 -249 7 969 2704 40 65 0 chr6 50461811 50462136 -99054901 - ORR1A1 LTR MaLR 0 346 1 7 121 14190 56 7 1 chr6 50462136 50463916 -99053121 - ORR1A1-int LTR MaLR 0 1792 3 7 970 2683 40 65 0 chr6 50463917 50464242 -99052795 - ORR1A1 LTR MaLR 0 346 1 7 970 2000 95 33 132 chr6 50464242 50464503 -99052534 + ORR1A4 LTR MaLR 81 328 -1 7 970 688 284 139 7 chr6 50465021 50465308 -99051729 + L1ME2 LINE L1 5501 5825 -339 7 970 221 292 26 78 chr6 50465848 50465963 -99051074 - MIRc SINE MIR 0 268 160 7 970 342 258 182 36 chr6 50466284 50466449 -99050588 - MIR3 SINE MIR -13 195 7 7 970 454 304 116 101 chr6 50466607 50466962 -99050075 - L1ME2 LINE L1 -103 6061 5702 7 970 28 48 0 0 chr6 50467105 50467147 -99049890 + AT_rich Low_complexity Low_complexity 1 42 0 7 970 2939 61 68 2 chr6 50467221 50467630 -99049407 + L1_Mus3 LINE L1 6202 6637 -1 7 970 21 0 0 0 chr6 50468009 50468030 -99049007 + AT_rich Low_complexity Low_complexity 1 21 0 7 970 940 304 153 34 chr6 50468090 50468533 -99048504 - MLT1D LTR MaLR 0 505 10 7 970 351 383 34 0 chr6 50469437 50469586 -99047451 + MER91B DNA Tip100 33 186 -4 7 970 1486 159 16 16 chr6 50470495 50470744 -99046293 - RMER4B LTR ERVK 0 585 337 7 970 1104 103 6 31 chr6 50470744 50470905 -99046132 + B2_Mm2 SINE B2 2 158 -37 8 970 243 0 0 0 chr6 50470906 50470933 -99046104 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 970 1972 153 50 9 chr6 50470943 50471020 -99046017 - RMER4B LTR ERVK -234 351 278 7 970 299 85 21 0 chr6 50471020 50471067 -99045970 + (CCAA)n Simple_repeat Simple_repeat 1 48 0 8 970 1972 153 50 9 chr6 50471067 50471326 -99045711 - RMER4B LTR ERVK -308 277 3 7 970 335 354 11 66 chr6 50473813 50474085 -99042952 - L2 LINE L2 -437 2982 2726 8 970 221 130 41 61 chr6 50474670 50474735 -99042302 + B1F SINE Alu 10 72 -77 8 970 5629 58 20 0 chr6 50474817 50475525 -99041512 + L1_Mus2 LINE L1 5845 6566 0 8 970 1055 232 74 87 chr6 50475749 50476168 -99040869 - MTE2a LTR MaLR 0 419 6 8 970 181 323 147 21 chr6 50476379 50476569 -99040468 - L2 LINE L2 -1483 1936 1723 8 970 238 143 24 0 chr6 50476874 50476916 -99040121 + MamGypLTR3 LTR Gypsy 558 600 -239 8 970 21 36 0 0 chr6 50478107 50478135 -99038902 + AT_rich Low_complexity Low_complexity 1 28 0 8 970 422 276 12 94 chr6 50478379 50478539 -99038498 - B4 SINE B4 -145 147 1 8 970 1019 82 0 0 chr6 50479663 50479797 -99037240 + B1_Mus1 SINE Alu 4 137 -11 8 970 309 26 0 0 chr6 50479798 50479836 -99037201 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 8 970 4846 157 70 11 chr6 50480632 50480822 -99036215 - RMER19B LTR ERVK -5 897 696 8 970 240 35 0 0 chr6 50480822 50480851 -99036186 + (CAG)n Simple_repeat Simple_repeat 1 29 0 8 970 4846 157 70 11 chr6 50480851 50481506 -99035531 - RMER19B LTR ERVK -207 695 3 8 970 579 318 48 133 chr6 50481618 50482010 -99035027 + L1MEf LINE L1 1095 1453 -4789 8 970 434 110 49 0 chr6 50482383 50482465 -99034572 + Lx2 LINE L1 6912 6997 0 8 970 333 0 0 0 chr6 50482548 50482585 -99034452 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 970 295 293 30 89 chr6 50482591 50482704 -99034333 + B1_Mur1 SINE Alu 1 105 -44 8 970 328 244 138 115 chr6 50482704 50482834 -99034203 + B3 SINE B2 3 135 -81 8 970 8678 29 0 0 chr6 50483495 50484598 -99032439 - L1Md_T LINE L1 0 6582 5480 8 970 858 230 6 39 chr6 50484598 50484779 -99032258 + B3 SINE B2 42 216 0 8 970 260 289 170 24 chr6 50484807 50485013 -99032024 + L1MEf LINE L1 2352 2587 -3559 8 970 315 310 25 49 chr6 50485028 50485150 -99031887 + L1MD LINE L1 2572 2690 -3456 8 970 1284 85 10 45 chr6 50485225 50485423 -99031614 + Lx2 LINE L1 6537 6727 -270 8 970 230 303 13 38 chr6 50485482 50485561 -99031476 + MER94 DNA AcHobo 4 80 -54 8 970 616 296 45 0 chr6 50486146 50486325 -99030712 + ID_B1 SINE B4 35 221 -3 8 970 618 186 85 0 chr6 50487237 50487366 -99029671 - B1_Mur4 SINE Alu -10 140 1 8 970 2354 222 166 23 chr6 50488044 50489527 -99027510 - RMER1B Other Other 0 1066 1 8 970 246 233 81 169 chr6 50490045 50490133 -99026904 - B1F1 SINE Alu 0 149 61 8 970 771 175 319 0 chr6 50490133 50490293 -99026744 + B3 SINE B2 2 212 -4 8 970 246 233 81 169 chr6 50490293 50490328 -99026709 - B1F1 SINE Alu -89 60 37 8 970 230 347 9 47 chr6 50490482 50490588 -99026449 - ID_B1 SINE B4 -121 103 2 8 970 315 289 57 71 chr6 50490821 50491033 -99026004 - L1MEe LINE L1 -3994 2874 2666 8 970 216 0 0 0 chr6 50491472 50491496 -99025541 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 970 29 70 0 0 chr6 50491533 50491590 -99025447 + AT_rich Low_complexity Low_complexity 1 57 0 8 970 1148 106 6 0 chr6 50491914 50492093 -99024944 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 8 970 272 219 119 9 chr6 50492264 50492374 -99024663 - L1MEe LINE L1 -4751 2099 1998 8 970 225 236 18 0 chr6 50492466 50492521 -99024516 + Charlie1 DNA MER1_type 901 956 -1825 8 970 452 157 0 0 chr6 50492595 50492665 -99024372 - RLTR25A LTR ERVK -1033 70 1 8 970 243 286 40 67 chr6 50492665 50492730 -99024307 + MTEa LTR MaLR 191 253 -126 8 970 243 212 119 15 chr6 50492711 50492778 -99024259 + MTEa LTR MaLR 190 263 -116 8 970 471 304 38 12 chr6 50492794 50492954 -99024083 + MTEb LTR MaLR 201 364 -15 8 970 23 33 0 0 chr6 50493083 50493113 -99023924 + AT_rich Low_complexity Low_complexity 1 30 0 8 970 201 94 0 0 chr6 50493244 50493276 -99023761 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 8 970 502 305 15 0 chr6 50493283 50493414 -99023623 + ID_B1 SINE B4 92 224 0 8 970 665 272 80 21 chr6 50493631 50493969 -99023068 - L1MC5 LINE L1 -277 7684 7327 8 970 330 281 126 42 chr6 50494009 50494128 -99022909 + MLT1D LTR MaLR 369 497 -8 8 970 927 250 180 22 chr6 50494444 50494767 -99022270 + MTEa LTR MaLR 3 376 -3 8 970 2362 165 22 2 chr6 50496167 50496573 -99020464 + Lx5 LINE L1 6637 7050 0 8 970 365 330 42 0 chr6 50496830 50496948 -99020089 + MIRb SINE MIR 109 231 -37 8 970 604 56 0 0 chr6 50497583 50497654 -99019383 + L1Md_F2 LINE L1 5516 5586 -297 8 970 8063 49 11 1 chr6 50497654 50498638 -99018399 + L1Md_F2 LINE L1 5587 6580 -2 8 970 468 0 0 0 chr6 50498733 50498785 -99018252 + (TAAAA)n Simple_repeat Simple_repeat 2 53 0 8 970 1291 121 309 11 chr6 50499019 50499294 -99017743 + RMER19C LTR ERVK 1 357 -254 8 970 316 76 0 250 chr6 50499296 50499384 -99017653 + RMER19C LTR ERVK 546 611 0 8 970 555 43 0 0 chr6 50499547 50499617 -99017420 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 970 1263 94 0 0 chr6 50500407 50500587 -99016450 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 970 243 0 0 0 chr6 50500890 50500917 -99016120 + (CAGG)n Simple_repeat Simple_repeat 1 27 0 2 970 345 24 0 0 chr6 50500917 50500959 -99016078 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 970 1017 207 38 5 chr6 50501134 50501343 -99015694 + B3 SINE B2 1 216 0 4 970 230 136 97 48 chr6 50501348 50501410 -99015627 + LTR40b LTR ERVL 331 395 -67 5 970 1609 196 123 13 chr6 50501642 50502015 -99015022 + MTD LTR MaLR 2 415 -4 6 970 1029 271 101 30 chr6 50502034 50502499 -99014538 - ORR1E-int LTR MaLR -1081 499 2 7 970 517 273 127 71 chr6 50502502 50502841 -99014196 - ORR1E LTR MaLR -1 358 1 7 970 320 244 51 51 chr6 50502961 50503080 -99013957 - L1MA7 LINE L1 -21 6279 6166 8 970 414 0 0 0 chr6 50503258 50503304 -99013733 + (TC)n Simple_repeat Simple_repeat 2 47 0 9 970 297 51 0 0 chr6 50503304 50503342 -99013695 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 970 433 280 6 83 chr6 50503487 50503643 -99013394 - RSINE1 SINE B4 -19 146 3 1 970 315 321 9 35 chr6 50503829 50503945 -99013092 - MER20 DNA MER1_type -71 148 36 1 970 2931 41 3 0 chr6 50504029 50504374 -99012663 - ORR1A1 LTR MaLR 0 346 1 1 970 367 80 0 0 chr6 50504512 50504562 -99012475 + B1_Mus1 SINE Alu 7 56 -92 1 970 439 315 0 0 chr6 50504564 50504675 -99012362 + (CAGAGA)n Simple_repeat Simple_repeat 1 111 0 1 970 565 330 33 8 chr6 50504728 50504969 -99012068 - MLT1D LTR MaLR -258 247 1 1 970 395 260 10 20 chr6 50505480 50505582 -99011455 - PB1D10 SINE Alu -7 110 10 1 970 261 344 10 10 chr6 50505497 50505594 -99011443 - ID_B1 SINE B4 -49 175 79 1 970 222 189 0 0 chr6 50505619 50505656 -99011381 + B1F2 SINE Alu 2 38 -111 1 970 2621 302 108 28 chr6 50505753 50506342 -99010695 + Lx8 LINE L1 6102 6720 -753 2 970 189 0 0 0 chr6 50506342 50506363 -99010674 + (TGG)n Simple_repeat Simple_repeat 1 21 0 2 970 2621 302 108 28 chr6 50506363 50507028 -99010009 + Lx8 LINE L1 6721 7456 -17 2 970 310 245 42 11 chr6 50507956 50508051 -99008986 + PB1D10 SINE Alu 18 115 -2 2 970 570 67 0 0 chr6 50508456 50508531 -99008506 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 2 970 1131 71 0 0 chr6 50508533 50508673 -99008364 - B1_Mus2 SINE Alu -6 141 2 2 970 418 185 312 0 chr6 50509901 50510058 -99006979 + B3 SINE B2 11 216 0 2 970 1014 83 100 12 chr6 50510078 50510248 -99006789 - B2_Mm2 SINE B2 0 195 11 2 970 792 182 21 0 chr6 50510250 50510393 -99006644 - B1_Mus2 SINE Alu -1 146 1 2 970 863 202 149 0 chr6 50510576 50510764 -99006273 - ID_B1 SINE B4 -7 217 2 2 970 277 200 18 0 chr6 50510851 50510906 -99006131 - PB1D10 SINE Alu -8 109 54 2 970 400 292 47 0 chr6 50511270 50511376 -99005661 - RSINE1 SINE B4 -17 148 38 3 970 1100 76 21 0 chr6 50511376 50511521 -99005516 + B1_Mus1 SINE Alu 1 148 0 3 970 1502 37 37 11 chr6 50511777 50511967 -99005070 + B2_Mm2 SINE B2 1 195 0 3 970 1189 75 0 0 chr6 50513519 50513666 -99003371 - B1_Mus1 SINE Alu 0 148 2 3 970 626 192 204 0 chr6 50513795 50513967 -99003070 + B3 SINE B2 2 208 -8 3 970 537 247 18 60 chr6 50517566 50517734 -98999303 - MER2 DNA MER2_type -12 333 173 3 970 921 55 0 8 chr6 50518240 50518367 -98998670 - RMER2 LTR ERV1 -441 126 1 3 970 722 179 14 20 chr6 50518942 50519090 -98997947 + B1_Mur3 SINE Alu 3 149 0 3 970 319 234 28 0 chr6 50519093 50519200 -98997837 + GA-rich Low_complexity Low_complexity 5 114 0 3 970 276 91 0 0 chr6 50519574 50519618 -98997419 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 3 970 3251 50 8 0 chr6 50519699 50520096 -98996941 + MTB LTR MaLR 1 400 0 4 970 316 221 167 76 chr6 50520131 50520263 -98996774 - L1MB2 LINE L1 -3 6168 6025 4 970 835 273 115 23 chr6 50520281 50520685 -98996352 + MLT2B3 LTR ERVL 136 584 -133 4 970 760 66 0 0 chr6 50520878 50520984 -98996053 + B2_Mm2 SINE B2 2 107 -88 4 970 381 250 21 10 chr6 50521167 50521264 -98995773 + RSINE1 SINE B4 14 111 -54 4 970 1053 58 58 0 chr6 50521518 50521656 -98995381 + B1_Mus2 SINE Alu 2 147 0 4 970 241 215 154 0 chr6 50522019 50522084 -98994953 - ID4 SINE ID -6 77 3 4 970 799 298 83 11 chr6 50522276 50522554 -98994483 - RMER15 LTR ERVL -110 465 168 4 970 520 247 74 20 chr6 50522645 50522794 -98994243 + RSINE1 SINE B4 3 159 -6 4 970 308 140 0 20 chr6 50523199 50523250 -98993787 - B1_Mm SINE Alu -38 109 60 4 970 29 0 0 0 chr6 50524539 50524568 -98992469 + AT_rich Low_complexity Low_complexity 1 29 0 5 970 278 319 0 0 chr6 50525165 50525237 -98991800 - ID4_ SINE ID -10 73 2 5 970 478 253 157 20 chr6 50525395 50525738 -98991299 + L1ME2z LINE L1 6037 6426 -18 5 970 615 276 98 25 chr6 50525834 50526038 -98990999 + ID_B1 SINE B4 6 224 0 5 970 656 311 15 30 chr6 50526300 50526502 -98990535 - ID_B1 SINE B4 -25 199 1 5 970 22 35 0 0 chr6 50526784 50526813 -98990224 + AT_rich Low_complexity Low_complexity 1 29 0 5 970 408 293 114 0 chr6 50528471 50528611 -98988426 - B3A SINE B2 -16 182 27 5 970 189 0 0 0 chr6 50528649 50528670 -98988367 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 970 324 0 0 0 chr6 50529089 50529125 -98987912 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 970 464 251 52 71 chr6 50529130 50529340 -98987697 - B4A SINE B4 -84 208 3 5 970 1354 81 16 0 chr6 50529651 50529836 -98987201 - B2_Mm1t SINE B2 -5 188 1 6 970 424 288 56 0 chr6 50530916 50531041 -98985996 + RSINE1 SINE B4 1 132 -33 6 970 810 161 0 0 chr6 50531067 50531197 -98985840 + B1_Mur4 SINE Alu 21 150 0 6 970 244 222 0 36 chr6 50531204 50531288 -98985749 + A-rich Low_complexity Low_complexity 4 84 0 6 970 666 198 104 6 chr6 50531387 50531570 -98985467 + B3 SINE B2 16 216 0 6 970 918 217 79 0 chr6 50531748 50531951 -98985086 + ID_B1 SINE B4 1 219 -5 6 970 21 71 0 0 chr6 50532626 50532668 -98984369 + AT_rich Low_complexity Low_complexity 1 42 0 6 970 225 0 0 0 chr6 50533403 50533428 -98983609 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 970 352 221 143 50 chr6 50533631 50533750 -98983287 - B4A SINE B4 -4 288 159 6 970 431 152 25 0 chr6 50533766 50533845 -98983192 - B4A SINE B4 -204 88 8 6 970 429 20 0 0 chr6 50534977 50535027 -98982010 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 970 536 287 42 172 chr6 50535224 50535556 -98981481 + MLT1C LTR MaLR 1 289 -101 7 970 328 317 42 6 chr6 50535793 50535958 -98981079 + L1MC3 LINE L1 6693 6863 -922 7 970 449 232 21 0 chr6 50536189 50536284 -98980753 - ID_B1 SINE B4 -5 219 123 7 970 435 127 14 14 chr6 50536292 50536364 -98980673 - ID4 SINE ID -11 72 1 7 970 986 298 108 5 chr6 50536364 50536926 -98980111 + L1MC3 LINE L1 7084 7911 -84 7 970 211 229 0 59 chr6 50540113 50540164 -98976873 + MIRb SINE MIR 28 75 -193 7 970 231 216 138 40 chr6 50540592 50540686 -98976351 - BC1_Mm scRNA scRNA -45 107 10 7 970 248 286 78 39 chr6 50540718 50540820 -98976217 - PB1D10 SINE Alu -9 108 3 7 970 416 242 111 0 chr6 50540903 50541002 -98976035 + RSINE1 SINE B4 17 126 -39 7 970 844 226 87 5 chr6 50541187 50541383 -98975654 - B3 SINE B2 -3 213 2 7 970 456 196 10 10 chr6 50542672 50542770 -98974267 - PB1D7 SINE Alu -22 98 1 7 970 250 261 56 28 chr6 50542805 50542876 -98974161 - ID4 SINE ID -10 73 1 8 970 454 252 0 112 chr6 50543194 50543319 -98973718 - PB1D7 SINE Alu 0 120 10 8 970 261 0 0 0 chr6 50543572 50543601 -98973436 + (T)n Simple_repeat Simple_repeat 1 29 0 8 970 619 214 178 16 chr6 50544003 50544188 -98972849 - B3 SINE B2 0 216 2 8 970 663 237 18 96 chr6 50544501 50544730 -98972307 - B3 SINE B2 -4 212 2 8 970 790 268 27 54 chr6 50544804 50545025 -98972012 - B4A SINE B4 0 292 78 8 970 234 0 0 0 chr6 50545567 50545593 -98971444 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 970 200 180 0 57 chr6 50546879 50546932 -98970105 + C-rich Low_complexity Low_complexity 3 52 0 8 970 186 128 0 0 chr6 50547229 50547268 -98969769 + (A)n Simple_repeat Simple_repeat 1 39 0 8 970 579 249 28 98 chr6 50549016 50549270 -98967767 - RMER17C-int LTR ERVK -404 2834 2599 8 970 239 273 8 98 chr6 50550897 50551019 -98966018 + RLTR8 LTR ERVK 252 362 -3 9 970 386 198 10 10 chr6 50551159 50551256 -98965781 + Lx3A LINE L1 6885 6981 0 9 970 1191 55 0 7 chr6 50551403 50551550 -98965487 + B1_Mus1 SINE Alu 2 147 -1 9 970 230 106 21 0 chr6 50551550 50551597 -98965440 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 9 970 219 309 113 14 chr6 50551950 50552091 -98964946 + MIRb SINE MIR 96 250 -18 9 970 287 25 25 0 chr6 50552562 50552602 -98964435 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 9 970 1102 48 7 46 chr6 50552606 50552758 -98964279 - B1_Mm SINE Alu 0 147 2 9 970 42 20 0 0 chr6 50552947 50552996 -98964041 + AT_rich Low_complexity Low_complexity 1 49 0 9 970 279 0 0 0 chr6 50553517 50553548 -98963489 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 970 910 245 49 66 chr6 50553588 50554100 -98962937 - BGLII_B LTR ERVK -59 494 39 9 970 3350 223 84 54 chr6 50554169 50555282 -98961755 - RMER3D-int LTR ERVK -1 2841 1695 1 970 6913 107 5 2 chr6 50555327 50556637 -98960400 - L1_Mus2 LINE L1 0 6566 5255 1 970 678 178 0 0 chr6 50556634 50556752 -98960285 + L1_Mur2 LINE L1 5111 5228 -649 1 970 618 273 45 114 chr6 50556752 50557265 -98959772 - RMER3D-int LTR ERVK -1138 1704 1382 1 970 569 198 0 0 chr6 50557278 50557394 -98959643 - RMER3D-int LTR ERVK -1460 1382 1267 1 970 754 192 0 52 chr6 50557394 50557548 -98959489 + B1_Mus2 SINE Alu 1 146 -1 1 970 465 34 0 0 chr6 50557821 50557880 -98959157 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 970 541 61 12 12 chr6 50557883 50557966 -98959071 + (GA)n Simple_repeat Simple_repeat 1 83 0 1 970 2217 158 64 49 chr6 50558100 50558552 -98958485 + MT2B2 LTR ERVL 1 459 -125 1 970 603 0 0 0 chr6 50558564 50558631 -98958406 + (CTG)n Simple_repeat Simple_repeat 3 69 0 1 970 826 138 0 0 chr6 50560847 50560977 -98956060 + Lx3_Mus LINE L1 6716 6845 -164 1 970 243 0 0 0 chr6 50561046 50561073 -98955964 + (CAG)n Simple_repeat Simple_repeat 3 29 0 1 970 1052 187 0 78 chr6 50561086 50561318 -98955719 - MT2B2 LTR ERVL -125 459 246 1 970 567 116 0 0 chr6 50561318 50561404 -98955633 - MT2B2 LTR ERVL -498 86 1 1 970 364 67 33 0 chr6 50561538 50561598 -98955439 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 970 207 0 0 0 chr6 50561859 50561882 -98955155 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 970 2369 97 3 6 chr6 50561893 50562226 -98954811 + IAPLTR1a_Mm LTR ERVK 1 332 -5 1 970 1181 95 0 132 chr6 50562226 50562445 -98954592 + IAPEz-int LTR ERVK 6 195 -6286 1 970 232 289 0 0 chr6 50562453 50562498 -98954539 + RLTR27 LTR ERVK 231 275 -34 1 970 3823 54 24 18 chr6 50562498 50562990 -98954047 + IAPEz-int LTR ERVK 168 662 -5819 1 970 988 59 0 0 chr6 50562990 50563109 -98953928 + IAPEz-int LTR ERVK 1359 1477 -5004 1 970 1907 89 0 0 chr6 50563110 50563356 -98953681 + IAPEz-int LTR ERVK 2252 2497 -5183 1 970 14618 65 9 3 chr6 50563355 50565168 -98951869 + IAPEz-int LTR ERVK 4656 6479 -2 1 970 2315 101 3 6 chr6 50565170 50565499 -98951538 + IAPLTR1a_Mm LTR ERVK 1 328 -9 1 970 768 173 7 54 chr6 50565510 50565657 -98951380 - B1_Mus1 SINE Alu -8 140 1 1 970 573 180 0 0 chr6 50565662 50565773 -98951264 + RMER3D-int LTR ERVK 1272 1382 -1460 1 970 463 273 31 108 chr6 50565776 50566132 -98950905 + RMER3D-int LTR ERVK 1382 1545 -1297 1 970 705 185 43 25 chr6 50566159 50566320 -98950717 + RMER3D-int LTR ERVK 1541 1704 -1138 1 970 720 144 0 0 chr6 50566320 50566438 -98950599 - L1_Mus2 LINE L1 -649 5234 5117 1 970 6866 99 4 28 chr6 50566435 50567782 -98949255 + L1_Mus2 LINE L1 5255 6566 0 1 970 933 50 0 0 chr6 50568703 50568822 -98948215 + (TCTCC)n Simple_repeat Simple_repeat 3 121 0 1 970 773 188 34 84 chr6 50568849 50569087 -98947950 - Lx LINE L1 -1 6653 6428 1 970 1361 204 8 0 chr6 50569084 50569344 -98947693 + L1_Mm LINE L1 5459 5720 -163 1 970 1902 115 0 16 chr6 50569361 50569670 -98947367 - Lx3_Mus LINE L1 -1 7008 6705 1 970 522 0 0 0 chr6 50571888 50571946 -98945091 + (CAG)n Simple_repeat Simple_repeat 3 60 0 1 970 2230 158 64 49 chr6 50571958 50572410 -98944627 - MT2B2 LTR ERVL -125 459 1 1 970 509 68 0 13 chr6 50572537 50572612 -98944425 + (TC)n Simple_repeat Simple_repeat 2 75 0 1 970 210 37 0 0 chr6 50572870 50572897 -98944140 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 970 845 151 7 58 chr6 50572899 50573054 -98943983 - B1_Mus1 SINE Alu -1 147 1 1 970 562 198 0 0 chr6 50573054 50573170 -98943867 + RMER3D-int LTR ERVK 1267 1382 -1460 1 970 463 269 31 111 chr6 50573182 50573528 -98943509 + RMER3D-int LTR ERVK 1382 1545 -1297 1 970 705 185 43 25 chr6 50573555 50573716 -98943321 + RMER3D-int LTR ERVK 1541 1704 -1138 1 970 702 152 0 0 chr6 50573716 50573834 -98943203 - L1_Mus2 LINE L1 -649 5234 5117 1 970 4275 119 0 17 chr6 50573831 50573955 -98943082 + L1_Mus2 LINE L1 5255 5370 -513 1 970 4244 29 12 2 chr6 50573955 50574443 -98942594 + MT2_Mm LTR ERVL 1 493 0 1 970 7110 91 0 34 chr6 50574443 50575679 -98941358 + L1_Mus2 LINE L1 5371 6566 0 1 970 285 29 0 0 chr6 50576622 50576656 -98940381 + (TTCTC)n Simple_repeat Simple_repeat 2 35 0 1 970 743 203 21 79 chr6 50576686 50576927 -98940110 - Lx LINE L1 0 6654 6428 1 970 1369 208 8 0 chr6 50576924 50577184 -98939853 + L1_Mm LINE L1 5459 5720 -163 1 970 1994 105 0 16 chr6 50577201 50577510 -98939527 - Lx3_Mus LINE L1 -1 7008 6705 1 970 1234 242 131 57 chr6 50578988 50579614 -98937423 - MYSERV6-int LTR ERVK -297 8662 8092 1 970 312 247 12 0 chr6 50579611 50579692 -98937345 - MYSERV6-int LTR ERVK -3408 2114 2033 1 970 2353 143 118 45 chr6 50580282 50580766 -98936271 + MURVY-LTR LTR ERV1 1 519 0 1 970 320 274 84 23 chr6 50580903 50581034 -98936003 - RodERV21-int LTR ERV1 -4824 167 29 1 970 324 296 51 15 chr6 50581443 50581580 -98935457 + ID_B1 SINE B4 78 219 -5 1 970 543 325 50 73 chr6 50581696 50581992 -98935045 - ORR1E LTR MaLR -81 293 7 1 970 3599 67 28 0 chr6 50582359 50582823 -98934214 - L1_Mus3 LINE L1 -369 6269 5793 1 970 2636 68 14 3 chr6 50582823 50583175 -98933862 + L1_Mus3 LINE L1 6283 6638 0 1 970 1852 163 71 57 chr6 50583663 50584099 -98932938 + RMER10A LTR ERVL 1 442 0 1 970 180 179 0 0 chr6 50584126 50584165 -98932872 + T-rich Low_complexity Low_complexity 1 39 0 1 970 1184 75 0 0 chr6 50584165 50584312 -98932725 - B1_Mus1 SINE Alu 0 148 2 1 970 277 116 29 0 chr6 50584379 50584448 -98932589 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 1 970 2345 185 13 38 chr6 50584479 50584956 -98932081 + RMER4A LTR ERVK 2 466 0 1 970 1113 114 6 12 chr6 50585231 50585391 -98931646 + RMER4A LTR ERVK 73 231 -235 1 970 424 338 81 32 chr6 50586748 50586996 -98930041 - Lx8 LINE L1 -56 7417 7158 1 970 597 224 13 39 chr6 50587092 50587245 -98929792 - B1_Mur3 SINE Alu 0 149 1 1 970 297 277 53 20 chr6 50587280 50587431 -98929606 - L1MA9 LINE L1 -374 5938 5783 1 970 24 53 0 0 chr6 50587520 50587558 -98929479 + AT_rich Low_complexity Low_complexity 1 38 0 1 970 200 98 48 24 chr6 50587565 50587607 -98929430 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 970 21 36 0 0 chr6 50587640 50587668 -98929369 + AT_rich Low_complexity Low_complexity 1 28 0 1 970 297 0 0 0 chr6 50587700 50587733 -98929304 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 970 387 208 29 38 chr6 50587735 50587840 -98929197 - L1MA9 LINE L1 -606 5706 5603 1 970 727 197 0 58 chr6 50587840 50587996 -98929041 - ORR1D1 LTR MaLR -227 147 1 1 970 325 289 58 0 chr6 50588072 50588176 -98928861 + PB1D10 SINE Alu 8 117 0 1 970 243 0 0 0 chr6 50588516 50588543 -98928494 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 1 970 613 77 0 0 chr6 50588544 50588622 -98928415 - B1_Mus2 SINE Alu -9 138 61 1 970 312 258 155 39 chr6 50588773 50588902 -98928135 + MLT1B LTR MaLR 7 150 -240 1 970 572 284 67 7 chr6 50589302 50589451 -98927586 - RSINE1 SINE B4 -6 159 2 1 970 207 0 0 0 chr6 50591471 50591494 -98925543 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 970 1097 103 0 0 chr6 50591494 50591639 -98925398 - B1_Mus1 SINE Alu -2 146 2 1 970 257 220 26 14 chr6 50592393 50592472 -98924565 + B4 SINE B4 1 79 -213 1 970 204 135 0 0 chr6 50592486 50592523 -98924514 + (A)n Simple_repeat Simple_repeat 1 37 0 1 970 279 333 26 17 chr6 50592552 50592668 -98924369 + (CATG)n Simple_repeat Simple_repeat 2 118 0 1 970 258 296 14 0 chr6 50592870 50592941 -98924096 + CT-rich Low_complexity Low_complexity 1 72 0 1 121 395 252 80 71 chr6 50593762 50593958 -98923079 + MLT1J LTR MaLR 231 498 -14 1 971 204 40 0 0 chr6 50594481 50594506 -98922531 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 971 291 241 89 0 chr6 50594656 50594735 -98922302 + B3 SINE B2 1 86 -130 1 971 1159 183 39 0 chr6 50595820 50596028 -98921009 + B3 SINE B2 1 216 0 1 971 218 56 0 27 chr6 50596062 50596099 -98920938 + (TTTTTG)n Simple_repeat Simple_repeat 3 38 0 1 971 307 277 13 15 chr6 50596176 50596267 -98920770 + ID4_ SINE ID 10 99 -53 1 971 569 152 61 0 chr6 50596286 50596385 -98920652 - MTC LTR MaLR -315 106 2 1 971 225 241 23 102 chr6 50597001 50597089 -98919948 - MLT1A0 LTR MaLR -16 349 269 1 971 2958 117 13 13 chr6 50597151 50597602 -98919435 + RLTR11B LTR ERVK 3 453 0 1 971 254 59 0 29 chr6 50597689 50597724 -98919313 + RMER10B LTR ERVL 1 34 -364 1 971 706 96 4 35 chr6 50597699 50597813 -98919224 - RMER10B LTR ERVL -329 113 1 1 971 204 40 0 0 chr6 50598834 50598859 -98918178 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 971 4749 35 2 0 chr6 50598863 50599414 -98917623 - L1Md_F2 LINE L1 -14 6568 6017 1 971 968 141 6 0 chr6 50599824 50600001 -98917036 + (TTC)n Simple_repeat Simple_repeat 1 178 0 1 971 288 77 0 0 chr6 50600002 50600041 -98916996 + (TCC)n Simple_repeat Simple_repeat 3 41 0 1 971 705 118 0 0 chr6 50600537 50600647 -98916390 + (TCCC)n Simple_repeat Simple_repeat 3 112 0 1 971 296 224 24 130 chr6 50600973 50600990 -98916047 + MT2B LTR ERVL 148 151 -450 1 971 704 226 7 40 chr6 50600990 50601142 -98915895 + B1_Mur2 SINE Alu 3 149 0 1 971 194 333 49 12 chr6 50601640 50601722 -98915315 - L2a LINE L2 0 3426 3342 1 971 24 0 0 0 chr6 50602886 50602910 -98914127 + AT_rich Low_complexity Low_complexity 1 24 0 1 971 26 0 0 0 chr6 50603082 50603108 -98913929 + AT_rich Low_complexity Low_complexity 1 26 0 1 971 272 260 280 16 chr6 50606555 50606680 -98910357 - RSINE1 SINE B4 -6 159 2 1 971 262 297 243 0 chr6 50606755 50606866 -98910171 - LTR41B LTR ERVL -200 558 421 1 971 22 0 0 0 chr6 50608085 50608107 -98908930 + AT_rich Low_complexity Low_complexity 1 22 0 1 971 24 0 0 0 chr6 50608348 50608372 -98908665 + AT_rich Low_complexity Low_complexity 1 24 0 1 971 569 262 18 30 chr6 50608879 50609044 -98907993 - RSINE1 SINE B4 0 165 3 1 971 2250 57 30 20 chr6 50609549 50609853 -98907184 + IAPLTR2b LTR ERVK 1 307 -20 1 971 608 256 18 12 chr6 50614785 50614951 -98902086 + Lx8 LINE L1 6299 6465 -1008 1 971 274 246 33 0 chr6 50614957 50615018 -98902019 - RSINE1 SINE B4 -95 70 8 1 971 423 0 0 0 chr6 50615074 50615121 -98901916 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1 971 22 35 0 0 chr6 50618661 50618690 -98898347 + AT_rich Low_complexity Low_complexity 1 29 0 1 971 476 183 50 0 chr6 50618831 50618951 -98898086 + Lx9 LINE L1 7518 7643 -1 2 971 927 264 101 11 chr6 50619757 50620105 -98896932 + MTE2b LTR MaLR 1 379 0 2 971 514 312 74 19 chr6 50620592 50620850 -98896187 + HERVL40-int LTR ERVL 4001 4272 -1258 2 971 479 333 73 0 chr6 50621262 50621496 -98895541 + MLT1D LTR MaLR 31 281 -224 2 971 351 89 0 0 chr6 50621498 50621554 -98895483 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 971 275 316 38 0 chr6 50621555 50621634 -98895403 - B4A SINE B4 -181 111 30 2 971 258 344 128 13 chr6 50621640 50621867 -98895170 + MLT1D-int LTR MaLR 89 341 -1030 2 971 443 297 34 67 chr6 50621901 50622110 -98894927 + MLT1D-int LTR MaLR 459 660 -711 2 971 368 181 12 0 chr6 50622149 50622232 -98894805 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 971 441 0 0 0 chr6 50622232 50622281 -98894756 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 971 546 287 89 0 chr6 50622289 50622491 -98894546 + MLT1D-int LTR MaLR 663 882 -489 2 971 620 291 69 24 chr6 50622645 50622934 -98894103 + L1MC4 LINE L1 7282 7583 -459 2 971 643 179 7 7 chr6 50623007 50623153 -98893884 + CT-rich Low_complexity Low_complexity 4 149 0 2 971 611 246 29 7 chr6 50623157 50623296 -98893741 - ID_B1 SINE B4 0 224 83 2 971 504 0 0 0 chr6 50623995 50624051 -98892986 + (CTG)n Simple_repeat Simple_repeat 3 58 0 2 971 1722 149 39 1 chr6 50624149 50624452 -98892585 + L1_Mur3 LINE L1 5583 5871 -9 2 971 642 110 0 42 chr6 50624453 50624548 -98892489 + Lx6 LINE L1 6797 6887 -573 2 971 294 29 0 0 chr6 50624549 50624584 -98892453 + (GGGAGA)n Simple_repeat Simple_repeat 6 40 0 2 971 2068 263 68 14 chr6 50624617 50625176 -98891861 + Lx6 LINE L1 6842 7430 -30 2 971 218 125 21 0 chr6 50625754 50625802 -98891235 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 971 1372 245 72 36 chr6 50626000 50626390 -98890647 - MTD LTR MaLR -2 417 14 2 971 219 69 0 0 chr6 50626441 50626470 -98890567 + (CCA)n Simple_repeat Simple_repeat 3 31 0 2 971 592 270 38 43 chr6 50627350 50627536 -98889501 - B4A SINE B4 0 292 108 2 971 356 222 25 0 chr6 50628751 50628832 -98888205 + URR1B DNA MER1_type 1 83 -142 2 971 342 0 0 0 chr6 50629774 50629812 -98887225 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 971 184 190 0 49 chr6 50630756 50630817 -98886220 + G-rich Low_complexity Low_complexity 4 61 0 2 971 513 120 20 20 chr6 50630815 50630917 -98886120 + GA-rich Low_complexity Low_complexity 1 102 0 2 971 207 268 0 0 chr6 50631468 50631509 -98885528 + polypurine Low_complexity Low_complexity 5 45 0 2 971 189 171 0 0 chr6 50634241 50634276 -98882761 + GA-rich Low_complexity Low_complexity 1 35 0 2 971 281 275 128 21 chr6 50634716 50634857 -98882180 - Lx8 LINE L1 -363 7110 6955 2 971 543 101 0 0 chr6 50635961 50636040 -98880997 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 971 218 146 0 47 chr6 50636070 50636113 -98880924 + (CACCC)n Simple_repeat Simple_repeat 3 43 0 2 971 2639 256 85 21 chr6 50636113 50636909 -98880128 - Lx9 LINE L1 -291 7353 6507 2 971 270 317 87 24 chr6 50637059 50637185 -98879852 + MER58A DNA MER1_type 67 200 -24 2 971 205 284 73 12 chr6 50637531 50637613 -98879424 + L3 LINE CR1 4314 4400 -89 2 971 327 49 0 0 chr6 50638817 50638858 -98878179 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 971 592 275 267 29 chr6 50639771 50640146 -98876891 - MLT1C LTR MaLR -2 465 2 2 971 585 291 34 11 chr6 50640888 50641065 -98875972 - MER5A DNA MER1_type -8 181 1 2 971 893 288 87 15 chr6 50641336 50641501 -98875536 + ORR1E LTR MaLR 1 175 -184 2 971 681 66 0 0 chr6 50641501 50641592 -98875445 + (TC)n Simple_repeat Simple_repeat 2 92 0 2 971 893 288 87 15 chr6 50641592 50641761 -98875276 + ORR1E LTR MaLR 176 358 -1 2 971 342 100 0 0 chr6 50642335 50642395 -98874642 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 971 244 103 0 0 chr6 50644263 50644302 -98872735 + MLT2B5 LTR ERVL 3 41 -676 2 971 476 245 33 13 chr6 50644417 50644570 -98872467 - MER90 LTR ERV1 -419 156 1 2 971 2126 300 84 36 chr6 50644885 50645315 -98871722 + Lx8 LINE L1 6417 6857 -616 2 971 1252 27 0 13 chr6 50645315 50645464 -98871573 - B1_Mm SINE Alu 0 147 1 2 971 2126 300 84 36 chr6 50645464 50645805 -98871232 + Lx8 LINE L1 6858 7225 -248 2 971 1293 199 43 59 chr6 50645806 50646111 -98870926 - MTD LTR MaLR 0 419 120 2 971 231 247 96 0 chr6 50646168 50646241 -98870796 + Lx8 LINE L1 6417 6496 -977 2 971 455 262 28 0 chr6 50646241 50646348 -98870689 - MTD LTR MaLR -309 110 1 2 971 428 297 103 43 chr6 50646348 50646580 -98870457 + Lx8 LINE L1 7226 7471 -2 2 971 268 253 108 37 chr6 50647245 50647328 -98869709 - MTEb LTR MaLR -18 361 273 2 971 277 221 0 81 chr6 50647608 50647682 -98869355 - MTEb LTR MaLR -311 68 1 2 971 220 136 0 22 chr6 50647720 50647765 -98869272 + A-rich Low_complexity Low_complexity 2 45 0 2 971 232 243 39 39 chr6 50648223 50648300 -98868737 + MER5A1 DNA MER1_type 89 165 -1 2 971 306 159 0 100 chr6 50648637 50648707 -98868330 - HAL1-3A_ME LINE L1 -820 2038 1976 2 971 591 152 0 0 chr6 50648709 50648821 -98868216 + (TG)n Simple_repeat Simple_repeat 2 113 0 2 971 180 0 0 0 chr6 50649465 50649485 -98867552 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 971 286 292 29 36 chr6 50649540 50649676 -98867361 + MLT1G3 LTR MaLR 4 178 -417 2 971 786 239 24 80 chr6 50650278 50650528 -98866509 + L1_Rod LINE L1 5439 5674 -173 2 971 853 257 158 21 chr6 50650538 50650869 -98866168 - MTD LTR MaLR -12 407 5 2 971 1319 169 62 114 chr6 50650873 50651295 -98865742 - MTD-int LTR MaLR 0 1258 859 2 971 315 0 0 0 chr6 50651334 50651369 -98865668 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 971 436 299 23 47 chr6 50651445 50651617 -98865420 + MER5B DNA MER1_type 5 172 -6 2 971 222 118 0 0 chr6 50652404 50652438 -98864599 + (T)n Simple_repeat Simple_repeat 1 34 0 2 971 181 111 67 0 chr6 50653520 50653565 -98863472 + (CACCAT)n Simple_repeat Simple_repeat 4 51 0 2 971 1141 41 0 26 chr6 50653856 50654007 -98863030 - B1_Mm SINE Alu 0 147 1 2 971 598 262 16 70 chr6 50654431 50654616 -98862421 + ID_B1 SINE B4 47 221 -3 2 971 234 0 0 0 chr6 50654616 50654642 -98862395 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 971 2099 127 22 0 chr6 50655133 50655455 -98861582 - ORR1A4 LTR MaLR 0 329 1 2 971 508 236 115 0 chr6 50655636 50655793 -98861244 - B3A SINE B2 -7 191 17 2 971 281 47 23 0 chr6 50656299 50656342 -98860695 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 971 285 109 0 0 chr6 50659553 50659599 -98857438 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 971 201 250 66 28 chr6 50660333 50660435 -98856602 + MIRc SINE MIR 86 189 -79 2 971 339 255 0 0 chr6 50661176 50661257 -98855780 + B3A SINE B2 2 82 -134 2 971 657 147 0 0 chr6 50662611 50662767 -98854270 + (TC)n Simple_repeat Simple_repeat 2 157 0 2 971 423 0 0 0 chr6 50663409 50663456 -98853581 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 971 1243 41 0 0 chr6 50665694 50665841 -98851196 - B1_Mus2 SINE Alu 0 147 1 2 971 23 33 0 0 chr6 50666060 50666090 -98850947 + AT_rich Low_complexity Low_complexity 1 30 0 2 971 180 0 0 0 chr6 50666479 50666499 -98850538 + (A)n Simple_repeat Simple_repeat 1 20 0 2 971 574 118 10 10 chr6 50666638 50666741 -98850296 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 2 971 606 272 44 0 chr6 50667665 50667823 -98849214 - B3A SINE B2 -32 166 2 2 971 941 156 0 26 chr6 50667967 50668118 -98848919 - B1_Mus2 SINE Alu 0 147 1 2 971 224 304 97 10 chr6 50668474 50668577 -98848460 - MIRc SINE MIR -81 181 70 2 971 2050 267 118 35 chr6 50669129 50669317 -98847720 - Lx9 LINE L1 -527 7117 6933 2 971 1467 74 16 0 chr6 50669317 50669507 -98847530 + B2_Mm2 SINE B2 3 195 0 2 971 2050 267 118 35 chr6 50669507 50670033 -98847004 - Lx9 LINE L1 -712 6932 6344 2 971 192 182 0 0 chr6 50672980 50673013 -98844024 + MIR SINE MIR 72 104 -104 2 971 626 297 110 57 chr6 50674394 50674730 -98842307 - ORR1E LTR MaLR -5 354 1 2 971 431 198 0 62 chr6 50675054 50675167 -98841870 - MER5A DNA MER1_type -81 108 3 2 971 336 24 0 0 chr6 50675324 50675365 -98841672 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 971 657 136 0 0 chr6 50675365 50675505 -98841532 + (GA)n Simple_repeat Simple_repeat 1 140 0 2 971 203 0 68 45 chr6 50679890 50679934 -98837103 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 2 971 380 270 175 0 chr6 50679985 50680122 -98836915 + MLT1C LTR MaLR 19 179 -288 2 971 276 200 0 0 chr6 50680370 50680435 -98836602 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 971 342 0 0 0 chr6 50680443 50680481 -98836556 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 971 366 23 0 0 chr6 50680481 50680523 -98836514 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 971 29 0 0 0 chr6 50681941 50681970 -98835067 + AT_rich Low_complexity Low_complexity 1 29 0 2 971 510 246 12 12 chr6 50681971 50682048 -98834989 + polypyrimidine Low_complexity Low_complexity 98 175 0 2 971 201 74 0 0 chr6 50682048 50682075 -98834962 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 2 971 510 246 12 12 chr6 50682075 50682170 -98834867 + polypyrimidine Low_complexity Low_complexity 3 97 0 2 971 967 111 0 24 chr6 50682195 50682288 -98834749 + (TTCC)n Simple_repeat Simple_repeat 3 93 0 2 971 231 103 0 0 chr6 50682288 50682327 -98834710 + (CTTG)n Simple_repeat Simple_repeat 1 39 0 2 971 2022 107 257 3 chr6 50682327 50682673 -98834364 - RLTR9B LTR ERVK -2 435 2 2 971 967 111 0 24 chr6 50682673 50682745 -98834292 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 2 971 378 0 0 0 chr6 50682838 50682880 -98834157 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 971 201 39 0 0 chr6 50683632 50683658 -98833379 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 971 243 0 0 0 chr6 50684007 50684034 -98833003 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 971 372 22 0 0 chr6 50684512 50684557 -98832480 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 971 793 93 22 52 chr6 50684648 50684784 -98832253 - B1_Mus1 SINE Alu -9 139 8 2 971 745 266 58 29 chr6 50684789 50685029 -98832008 - B4A SINE B4 -40 252 6 3 971 570 122 0 27 chr6 50686625 50686735 -98830302 + (CA)n Simple_repeat Simple_repeat 2 108 0 3 971 414 0 0 0 chr6 50686919 50686965 -98830072 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 971 438 53 0 0 chr6 50686965 50687022 -98830015 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 971 309 245 140 47 chr6 50687409 50687559 -98829478 + MLT1A1 LTR MaLR 245 408 0 3 971 498 206 25 13 chr6 50687616 50687773 -98829264 + (CATATA)n Simple_repeat Simple_repeat 3 161 0 3 971 412 169 13 25 chr6 50688598 50688692 -98828345 - B1_Mur1 SINE Alu -1 148 36 3 971 421 259 104 60 chr6 50688983 50689234 -98827803 + RMER20B LTR ERVK 234 495 -132 3 971 286 241 204 17 chr6 50689442 50689678 -98827359 - L2a LINE L2 -265 3161 2875 3 971 277 184 42 54 chr6 50689755 50689922 -98827115 + (TATAA)n Simple_repeat Simple_repeat 2 166 0 3 971 1540 92 13 0 chr6 50690168 50690397 -98826640 - ORR1A2 LTR MaLR 0 327 96 3 971 254 154 0 97 chr6 50690530 50690602 -98826435 - RMER20B LTR ERVK -136 491 427 3 971 432 131 40 29 chr6 50690583 50690706 -98826331 - ORR1A2 LTR MaLR -220 126 1 3 971 1908 82 85 3 chr6 50690775 50691057 -98825980 + Lx2 LINE L1 6693 6997 0 3 971 722 200 50 22 chr6 50691090 50691269 -98825768 + B3A SINE B2 14 197 -1 3 971 378 216 34 0 chr6 50691283 50691371 -98825666 - 4.5SRNA scRNA scRNA -2 92 2 3 971 242 364 33 67 chr6 50692916 50693066 -98823971 - MER91A DNA Tip100 -51 145 1 3 971 193 122 0 75 chr6 50694255 50694308 -98822729 + (TATG)n Simple_repeat Simple_repeat 2 50 0 3 971 806 73 75 145 chr6 50695444 50695603 -98821434 + B1_Mur4 SINE Alu 3 150 0 3 971 420 111 0 0 chr6 50695603 50695666 -98821371 + (GAAA)n Simple_repeat Simple_repeat 3 65 0 3 971 739 293 131 34 chr6 50698145 50698558 -98818479 + MLT1C LTR MaLR 1 453 -14 3 971 1289 235 97 13 chr6 50700103 50700483 -98816554 + MTD LTR MaLR 4 415 -4 3 971 243 250 0 0 chr6 50700497 50700557 -98816480 + MER3 DNA MER1_type 70 129 -80 3 971 309 192 27 0 chr6 50701049 50701122 -98815915 - L1MA5 LINE L1 -7 6293 6219 3 971 1515 215 88 5 chr6 50701459 50701833 -98815204 - MTD LTR MaLR -14 405 1 3 971 304 301 0 0 chr6 50701862 50701935 -98815102 - ID4 SINE ID -10 73 1 3 971 222 22 111 0 chr6 50702002 50702047 -98814990 + (TTTTTG)n Simple_repeat Simple_repeat 6 55 0 3 971 1426 256 11 19 chr6 50702384 50702750 -98814287 + ORR1D2 LTR MaLR 8 370 0 3 971 714 173 0 0 chr6 50704149 50704282 -98812755 + CT-rich Low_complexity Low_complexity 2 134 0 3 971 185 293 0 17 chr6 50705271 50705330 -98811707 - MIRm SINE MIR -12 264 207 3 971 618 272 89 34 chr6 50705533 50705769 -98811268 - Lx8 LINE L1 0 7473 7225 3 971 674 260 9 130 chr6 50705822 50705859 -98811178 - ORR1D1 LTR MaLR -157 213 178 3 971 1098 95 0 0 chr6 50705859 50706038 -98810999 + (GA)n Simple_repeat Simple_repeat 2 180 0 3 971 961 182 6 20 chr6 50706038 50706230 -98810807 - ORR1D1 LTR MaLR -193 181 12 3 971 2258 273 97 71 chr6 50706238 50707193 -98809844 - Lx8 LINE L1 -251 7222 6243 3 971 883 317 10 27 chr6 50707251 50707549 -98809488 + MTEa LTR MaLR 79 371 -8 3 971 228 325 12 24 chr6 50708526 50708611 -98808426 + GA-rich Low_complexity Low_complexity 1 84 0 3 971 1568 302 81 20 chr6 50709385 50710168 -98806869 - MER99 DNA hAT? 0 831 2 3 971 1070 257 62 11 chr6 50711168 50711443 -98805594 + B4A SINE B4 1 289 -3 3 971 353 275 26 68 chr6 50711936 50712053 -98804984 - B4A SINE B4 -173 119 8 3 971 248 179 52 21 chr6 50712149 50712246 -98804791 + (TA)n Simple_repeat Simple_repeat 1 100 0 3 971 187 31 62 0 chr6 50713161 50713193 -98803844 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 3 971 26 74 0 0 chr6 50714405 50714459 -98802578 + AT_rich Low_complexity Low_complexity 1 54 0 3 971 316 193 33 46 chr6 50714486 50714638 -98802399 + (TTATA)n Simple_repeat Simple_repeat 3 152 0 3 971 855 200 0 0 chr6 50714648 50714793 -98802244 - B1_Mus1 SINE Alu -1 147 3 3 971 23 0 0 0 chr6 50714990 50715013 -98802024 + AT_rich Low_complexity Low_complexity 1 23 0 3 971 355 227 82 98 chr6 50715536 50715658 -98801379 - B1F SINE Alu -1 148 29 3 971 324 230 93 29 chr6 50716210 50716349 -98800688 + L1ME4a LINE L1 5977 6124 0 3 971 334 346 95 36 chr6 50718546 50718852 -98798185 + L1MC4a LINE L1 5579 5902 -1980 3 971 381 263 52 10 chr6 50719859 50719955 -98797082 + MER57-int LTR ERV1 7144 7243 -294 3 971 21 0 0 0 chr6 50720970 50720991 -98796046 + AT_rich Low_complexity Low_complexity 1 21 0 3 971 348 353 31 5 chr6 50721896 50722087 -98794950 - MER20B DNA MER1_type -350 433 238 3 971 1685 288 172 16 chr6 50722116 50722871 -98794166 - Charlie1a DNA MER1_type -6 1449 577 3 971 388 333 109 45 chr6 50722968 50723279 -98793758 - Charlie1a DNA MER1_type -1117 338 8 3 971 270 0 0 0 chr6 50723355 50723385 -98793652 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 971 261 0 0 0 chr6 50723385 50723413 -98793624 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 971 229 204 0 0 chr6 50723414 50723458 -98793579 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 971 613 217 37 11 chr6 50723500 50723778 -98793259 - L1MA4 LINE L1 0 6300 5998 3 971 315 0 0 0 chr6 50724065 50724100 -98792937 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 971 656 12 12 0 chr6 50724100 50724180 -98792857 + (GA)n Simple_repeat Simple_repeat 1 82 0 3 971 332 341 70 29 chr6 50724610 50724782 -98792255 - MIRb SINE MIR -56 212 34 3 972 411 38 0 0 chr6 50725186 50725239 -98791798 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 972 963 120 50 67 chr6 50725245 50725424 -98791613 - B2_Mm2 SINE B2 -19 176 1 3 972 222 240 83 50 chr6 50728395 50728495 -98788542 + L2c LINE L2 3268 3399 -27 3 972 200 176 0 0 chr6 50728573 50728607 -98788430 + (ACTG)n Simple_repeat Simple_repeat 1 34 0 3 972 468 35 0 0 chr6 50728660 50728718 -98788319 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 972 433 115 11 11 chr6 50728718 50728806 -98788231 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 972 521 216 352 20 chr6 50729151 50729401 -98787636 - MLT1A1 LTR MaLR -12 396 64 3 972 1566 203 17 7 chr6 50730271 50730569 -98786468 + MTC LTR MaLR 119 419 -2 3 972 633 239 60 18 chr6 50731594 50731760 -98785277 - RCHARR1 DNA MER1_type -799 175 3 3 972 316 321 0 12 chr6 50732605 50732687 -98784350 + PB1D10 SINE Alu 1 81 -36 3 972 1931 306 39 19 chr6 50736017 50736664 -98780373 + Lx8 LINE L1 6685 7344 -129 3 972 1722 249 36 109 chr6 50736860 50737436 -98779601 - RMER19C LTR ERVK 0 611 78 3 972 356 285 32 26 chr6 50737725 50737880 -98779157 + HAL1 LINE L1 1675 1830 -677 3 972 342 152 0 0 chr6 50738151 50738210 -98778827 + (CAGAGA)n Simple_repeat Simple_repeat 4 62 0 3 972 531 151 17 78 chr6 50738210 50738325 -98778712 + B1F2 SINE Alu 42 149 0 3 972 325 286 96 15 chr6 50738420 50738619 -98778418 - L1M5 LINE L1 -1432 4714 4500 3 972 219 224 20 0 chr6 50738641 50738690 -98778347 - ID4_ SINE ID -32 51 2 3 972 322 271 105 48 chr6 50738694 50738818 -98778219 - L1M5 LINE L1 -1655 4491 4361 3 972 249 57 0 0 chr6 50738847 50738882 -98778155 + (TGG)n Simple_repeat Simple_repeat 1 35 0 3 972 523 256 71 16 chr6 50738882 50739009 -98778028 - RSINE1 SINE B4 -4 161 28 3 972 359 271 264 5 chr6 50739037 50739245 -98777792 - L1MD LINE L1 -1779 4367 4106 3 972 249 324 57 0 chr6 50739486 50739591 -98777446 + L1_Mm LINE L1 4730 4840 -1043 3 972 405 252 17 42 chr6 50739668 50739788 -98777249 - L1M5 LINE L1 -2321 3825 3709 3 972 288 0 0 0 chr6 50739838 50739870 -98777167 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3 972 311 340 51 19 chr6 50739870 50740026 -98777011 - RSINE1 SINE B4 -3 162 2 3 972 434 346 81 17 chr6 50740128 50740425 -98776612 - L1MEg LINE L1 -2457 3689 3374 3 972 582 15 0 0 chr6 50740682 50740749 -98776288 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 3 972 855 294 94 45 chr6 50740827 50740884 -98776153 - L1MEg LINE L1 -3143 3003 2962 3 972 270 305 0 0 chr6 50740884 50740966 -98776071 - ID4 SINE ID -1 82 1 3 972 855 294 94 45 chr6 50740966 50741514 -98775523 - L1MEg LINE L1 -3185 2961 2368 3 972 687 317 39 26 chr6 50741514 50741744 -98775293 + MLT1E2 LTR MaLR 336 568 -59 3 972 218 394 0 0 chr6 50741933 50742180 -98774857 + (TGGG)n Simple_repeat Simple_repeat 1 247 0 3 972 258 32 0 0 chr6 50742429 50742460 -98774577 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 972 583 347 69 44 chr6 50742679 50743041 -98773996 + Lx8 LINE L1 7013 7383 -90 3 972 301 295 13 0 chr6 50743160 50743238 -98773799 + L1M LINE L1 5343 5421 -703 3 972 439 340 14 43 chr6 50743335 50743612 -98773425 - L1MEg LINE L1 -5422 820 552 3 972 420 99 0 0 chr6 50745077 50745148 -98771889 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 972 666 287 34 84 chr6 50747012 50747309 -98769728 + B4A SINE B4 5 286 -6 3 972 393 22 0 0 chr6 50747669 50747715 -98769322 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 972 303 28 0 0 chr6 50747716 50747752 -98769285 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 972 345 218 102 11 chr6 50748747 50748835 -98768202 - PB1 SINE Alu 0 127 32 3 972 448 292 58 7 chr6 50748906 50749044 -98767993 + B1F SINE Alu 5 149 0 3 972 321 280 40 113 chr6 50751974 50752151 -98764886 + RMER12 LTR ERVK 702 865 -457 3 972 351 0 0 0 chr6 50755362 50755401 -98761636 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 972 432 0 0 0 chr6 50756664 50756712 -98760325 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 972 230 258 59 40 chr6 50757882 50757983 -98759054 - MIRb SINE MIR -21 247 145 3 972 228 333 10 31 chr6 50758177 50758273 -98758764 - Arthur1 DNA Tip100 -2096 1851 1758 3 972 261 0 0 0 chr6 50760561 50760590 -98756447 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 972 189 0 0 0 chr6 50760635 50760656 -98756381 + (T)n Simple_repeat Simple_repeat 1 21 0 4 972 225 146 0 0 chr6 50761688 50761736 -98755301 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 972 252 122 0 0 chr6 50761727 50761768 -98755269 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 4 972 290 213 16 32 chr6 50762365 50762428 -98754609 - RSINE1 SINE B4 -102 63 2 4 972 308 283 52 26 chr6 50763833 50763949 -98753088 - MER5B DNA MER1_type -57 121 3 4 972 1517 297 132 35 chr6 50764328 50765131 -98751906 - MER97a DNA MER1_type? -4 890 10 4 972 238 241 17 33 chr6 50765146 50765206 -98751831 - MIR SINE MIR -132 76 18 4 972 275 361 31 47 chr6 50766062 50766252 -98750785 + MIR SINE MIR 13 208 -60 4 972 321 193 0 0 chr6 50766379 50766436 -98750601 - B1F SINE Alu -26 123 67 4 972 565 222 26 0 chr6 50766439 50766556 -98750481 - B1F SINE Alu -28 121 2 4 972 225 0 0 0 chr6 50767373 50767398 -98749639 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 972 252 0 0 0 chr6 50767398 50767425 -98749612 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 972 27 0 0 0 chr6 50767432 50767459 -98749578 + AT_rich Low_complexity Low_complexity 1 27 0 4 972 375 333 87 65 chr6 50767759 50768005 -98749032 - MIR SINE MIR 0 262 17 4 972 190 326 78 44 chr6 50768058 50768148 -98748889 - L2a LINE L2 -28 3398 3306 4 972 663 336 84 35 chr6 50768186 50768651 -98748386 - MLT1F1 LTR MaLR 0 569 58 4 972 272 323 88 101 chr6 50770630 50771016 -98746021 + L2c LINE L2 2996 3376 -11 4 972 253 377 105 0 chr6 50771192 50771306 -98745731 - MIR3 SINE MIR -51 157 32 4 972 222 37 0 0 chr6 50771594 50771621 -98745416 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 4 972 727 189 124 50 chr6 50774959 50775160 -98741877 - B3 SINE B2 0 216 1 4 972 597 14 0 0 chr6 50776385 50776455 -98740582 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 972 218 171 12 81 chr6 50776470 50776563 -98740474 + MIRb SINE MIR 71 159 -49 4 972 1162 78 0 0 chr6 50776953 50777095 -98739942 + B1_Mus1 SINE Alu 1 142 -6 4 972 2213 203 5 176 chr6 50777864 50778599 -98738438 + RMER19C LTR ERVK 2 611 0 4 972 698 232 42 96 chr6 50778719 50778886 -98738151 - B3A SINE B2 -33 162 5 4 972 2223 169 42 2 chr6 50778925 50779334 -98737703 + Lx LINE L1 6230 6654 0 4 972 37 23 0 0 chr6 50779374 50779418 -98737619 + AT_rich Low_complexity Low_complexity 1 44 0 4 972 185 344 30 23 chr6 50780234 50780365 -98736672 + MER5B DNA MER1_type 36 167 -11 4 972 204 67 0 0 chr6 50781225 50781255 -98735782 + (ATG)n Simple_repeat Simple_repeat 1 30 0 4 972 360 285 67 110 chr6 50782146 50782355 -98734682 + L2c LINE L2 3187 3386 -1 4 972 209 273 100 10 chr6 50782593 50782693 -98734344 + MIR3 SINE MIR 100 208 0 4 972 780 214 31 21 chr6 50784045 50784236 -98732801 + MTD LTR MaLR 12 204 -215 4 972 798 144 0 0 chr6 50784238 50784363 -98732674 + B2_Mm2 SINE B2 5 129 -66 4 972 405 54 0 0 chr6 50784394 50784450 -98732587 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 4 972 477 281 12 34 chr6 50784466 50784607 -98732430 + MTD LTR MaLR 178 318 -78 4 972 292 363 93 30 chr6 50785432 50785733 -98731304 + L2b LINE L2 3045 3364 -11 4 972 234 0 0 0 chr6 50786714 50786740 -98730297 + (T)n Simple_repeat Simple_repeat 1 26 0 4 972 255 229 0 62 chr6 50786765 50786830 -98730207 - MIRc SINE MIR -120 148 88 4 972 678 177 37 0 chr6 50787054 50787218 -98729819 + (TATG)n Simple_repeat Simple_repeat 3 172 0 4 972 730 276 53 8 chr6 50787245 50787490 -98729547 - L1MA4 LINE L1 -382 5918 5663 4 972 3401 198 111 13 chr6 50788047 50788508 -98728529 - Lx9 LINE L1 -6 7638 7139 4 972 270 0 0 0 chr6 50788508 50788538 -98728499 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 972 342 0 0 0 chr6 50788538 50788575 -98728462 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 972 3401 198 111 13 chr6 50788575 50788932 -98728105 - Lx9 LINE L1 -506 7138 6740 4 972 236 304 107 17 chr6 50788990 50789167 -98727870 - LTR16A1 LTR ERVL 0 456 264 4 972 234 0 0 0 chr6 50789669 50789695 -98727342 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 4 972 516 105 0 0 chr6 50789802 50789878 -98727159 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 972 578 91 0 65 chr6 50790007 50790160 -98726877 + (TG)n Simple_repeat Simple_repeat 2 144 0 4 972 524 306 73 42 chr6 50790169 50790428 -98726609 + B4A SINE B4 26 292 0 4 972 219 286 16 0 chr6 50790428 50790491 -98726546 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 972 24 0 0 0 chr6 50793166 50793190 -98723847 + AT_rich Low_complexity Low_complexity 1 24 0 4 972 707 171 215 0 chr6 50793190 50793348 -98723689 + Lx9 LINE L1 7017 7208 -436 4 972 794 180 116 5 chr6 50793345 50793535 -98723502 + Lx9 LINE L1 7411 7621 -23 4 972 381 251 0 0 chr6 50794069 50794236 -98722801 + (CA)n Simple_repeat Simple_repeat 2 168 0 4 972 548 256 0 0 chr6 50794652 50794769 -98722268 + ID_B1 SINE B4 89 205 -19 4 972 240 59 0 0 chr6 50795058 50795092 -98721945 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 4 972 374 291 168 0 chr6 50796524 50796742 -98720295 - L1MB3 LINE L1 -3 6180 5929 4 972 359 353 59 31 chr6 50798720 50798942 -98718095 + MIRb SINE MIR 4 231 -37 4 972 249 271 0 0 chr6 50799026 50799085 -98717952 + CT-rich Low_complexity Low_complexity 2 60 0 4 972 573 249 113 46 chr6 50799111 50799305 -98717732 - B3 SINE B2 0 216 10 4 972 555 268 13 0 chr6 50799749 50799906 -98717131 + MTD LTR MaLR 1 159 -260 4 972 234 259 54 27 chr6 50803270 50803381 -98713656 - L1M5 LINE L1 -511 5683 5570 4 972 490 352 78 59 chr6 50803580 50803777 -98713260 + MLT1G3 LTR MaLR 1 209 -386 4 972 1265 45 17 6 chr6 50803777 50803955 -98713082 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 972 490 352 78 59 chr6 50803955 50804144 -98712893 + MLT1G3 LTR MaLR 210 393 -202 4 972 274 259 93 12 chr6 50804175 50804261 -98712776 + B4A SINE B4 83 175 -117 4 972 540 231 0 0 chr6 50804184 50804288 -98712749 + PB1D10 SINE Alu 7 110 -7 4 972 1031 311 94 0 chr6 50804711 50805210 -98711827 - L1MCa LINE L1 -3285 3036 2491 4 972 314 62 42 0 chr6 50805211 50805259 -98711778 + (TTTTC)n Simple_repeat Simple_repeat 2 51 0 4 972 490 269 71 88 chr6 50805439 50805732 -98711305 - L1MCa LINE L1 -4223 2285 1998 4 972 945 101 0 0 chr6 50805732 50805871 -98711166 + (TTTC)n Simple_repeat Simple_repeat 1 139 0 4 972 490 269 71 88 chr6 50805871 50805916 -98711121 - L1MCa LINE L1 -4511 1997 1953 4 972 449 311 81 0 chr6 50805916 50806064 -98710973 + B3A SINE B2 12 171 -27 4 972 622 214 128 48 chr6 50806089 50806276 -98710761 - B3 SINE B2 -11 205 4 4 972 2469 266 126 43 chr6 50806276 50807254 -98709783 + Lx7 LINE L1 6602 7663 -33 4 972 315 0 0 0 chr6 50807254 50807289 -98709748 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 972 2469 266 126 43 chr6 50807289 50807322 -98709715 + Lx7 LINE L1 7664 7695 -1 4 972 1662 283 133 60 chr6 50807290 50807701 -98709336 - L1MCa LINE L1 -4635 1873 1450 4 972 515 266 81 6 chr6 50807701 50807875 -98709162 - B3A SINE B2 -10 188 2 4 972 1662 283 133 60 chr6 50807875 50808700 -98708337 - L1MCa LINE L1 -5059 1449 546 4 972 228 322 169 13 chr6 50809668 50809825 -98707212 + MIR SINE MIR 57 241 -27 4 972 362 338 7 0 chr6 50809872 50810011 -98707026 + MER20 DNA MER1_type 30 169 -50 4 972 236 155 33 33 chr6 50810685 50810745 -98706292 - MTD LTR MaLR 0 419 360 4 972 638 231 75 65 chr6 50810748 50810947 -98706090 + B3 SINE B2 2 202 -14 4 972 1162 281 79 9 chr6 50810975 50811316 -98705721 - MTD LTR MaLR -54 365 1 4 972 2015 139 17 9 chr6 50811330 50811679 -98705358 + ORR1B2 LTR MaLR 1 352 -15 4 972 272 160 3 0 chr6 50811683 50811740 -98705297 - MTD LTR MaLR -14 405 359 4 972 281 213 0 0 chr6 50811739 50811800 -98705237 + B3A SINE B2 9 69 -129 4 972 277 250 0 0 chr6 50812782 50812846 -98704191 + L2a LINE L2 3110 3173 -253 4 972 187 308 75 21 chr6 50813327 50813420 -98703617 - L2a LINE L2 -44 3382 3285 4 972 903 316 130 26 chr6 50813857 50814922 -98702115 - L1M4 LINE L1 -2481 3665 2491 4 972 366 171 0 0 chr6 50814953 50815023 -98702014 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 972 21 36 0 0 chr6 50815084 50815112 -98701925 + AT_rich Low_complexity Low_complexity 1 28 0 4 972 254 302 66 80 chr6 50815834 50815971 -98701066 - ORR1E LTR MaLR -224 135 1 4 972 397 215 0 25 chr6 50816005 50816086 -98700951 - ID4_ SINE ID -3 80 2 4 972 844 150 9 26 chr6 50816266 50816500 -98700537 + CT-rich Low_complexity Low_complexity 1 229 0 4 972 243 246 62 0 chr6 50816549 50816614 -98700423 - L1MC5 LINE L1 -581 7380 7312 4 972 216 0 0 0 chr6 50817121 50817145 -98699892 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 4 972 520 289 168 77 chr6 50817642 50818094 -98698943 - MER21B LTR ERV1 -250 613 121 4 972 315 71 0 0 chr6 50818250 50818292 -98698745 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 972 271 301 135 8 chr6 50818493 50818630 -98698407 + MIR SINE MIR 29 173 -103 4 972 446 331 0 23 chr6 50818780 50818913 -98698124 - MTE2a LTR MaLR -210 169 40 4 972 406 298 139 14 chr6 50819578 50819786 -98697251 + MLT1A0 LTR MaLR 130 363 -2 4 972 501 127 0 0 chr6 50820324 50820403 -98696634 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 972 654 279 86 31 chr6 50820434 50820853 -98696184 - MLT2B4 LTR ERVL -66 490 1 4 972 1844 168 102 5 chr6 50821562 50821933 -98695104 + MTD LTR MaLR 1 407 -12 4 972 723 232 43 43 chr6 50821945 50822175 -98694862 + MTD-int LTR MaLR 6 235 -1023 4 972 433 253 44 179 chr6 50822528 50822884 -98694153 + MTD LTR MaLR 6 342 -77 4 972 718 328 31 15 chr6 50823014 50823274 -98693763 + B4A SINE B4 19 282 -10 4 972 444 67 0 0 chr6 50823291 50823351 -98693686 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 972 225 0 0 0 chr6 50824531 50824556 -98692481 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 972 180 0 0 0 chr6 50825373 50825393 -98691644 + (CAGAG)n Simple_repeat Simple_repeat 5 24 0 5 972 367 281 66 84 chr6 50825835 50826002 -98691035 - RSINE1 SINE B4 0 165 2 5 972 270 0 0 0 chr6 50827344 50827374 -98689663 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 972 819 277 24 28 chr6 50831522 50831771 -98685266 + B4A SINE B4 25 272 -20 5 972 400 139 0 25 chr6 50831792 50831873 -98685164 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 972 814 231 81 88 chr6 50832228 50832513 -98684524 - ORR1D2 LTR MaLR -82 288 6 5 972 504 0 0 0 chr6 50832609 50832665 -98684372 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 972 189 0 0 0 chr6 50834245 50834266 -98682771 + (GGCTG)n Simple_repeat Simple_repeat 4 24 0 5 972 261 250 14 0 chr6 50834291 50834363 -98682674 + MLT1A LTR MaLR 284 356 -18 5 972 1049 296 72 26 chr6 50835793 50836248 -98680789 - MER68 LTR ERVL -13 550 75 5 972 235 343 20 0 chr6 50836701 50836800 -98680237 - L1M5 LINE L1 -422 5702 5602 5 972 222 62 0 0 chr6 50837776 50837808 -98679229 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 5 972 351 0 0 0 chr6 50837905 50837944 -98679093 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 972 249 33 0 0 chr6 50837944 50837973 -98679064 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 972 441 254 204 17 chr6 50838242 50838418 -98678619 + B3 SINE B2 5 213 -3 5 972 252 360 0 0 chr6 50838445 50838531 -98678506 + MIRc SINE MIR 62 147 -121 5 972 1687 117 199 17 chr6 50838579 50838754 -98678283 + RMER17C LTR ERVK 1 183 -227 5 972 450 0 0 0 chr6 50838754 50838804 -98678233 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 972 1687 117 199 17 chr6 50838804 50838975 -98678062 + RMER17C LTR ERVK 184 409 -1 5 972 235 362 12 0 chr6 50838994 50839074 -98677963 + ID2 SINE ID 3 83 0 5 972 1044 76 28 7 chr6 50839185 50839330 -98677707 - B1_Mus1 SINE Alu 0 148 1 5 972 829 232 67 5 chr6 50839368 50839576 -98677461 + MTD LTR MaLR 25 245 -174 5 972 508 198 24 0 chr6 50842812 50843155 -98673882 + (TG)n Simple_repeat Simple_repeat 1 351 0 5 972 274 254 15 0 chr6 50843195 50843262 -98673775 - B4 SINE B4 -4 288 221 5 972 258 194 48 0 chr6 50843357 50843419 -98673618 - B1F2 SINE Alu -84 65 1 5 972 577 251 91 23 chr6 50843698 50843838 -98673199 + B3A SINE B2 12 164 -34 5 972 255 103 0 0 chr6 50843838 50843877 -98673160 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 972 577 251 91 23 chr6 50843877 50843911 -98673126 + B3A SINE B2 165 198 0 5 972 28 48 0 0 chr6 50843935 50843977 -98673060 + AT_rich Low_complexity Low_complexity 1 42 0 5 972 3426 278 99 25 chr6 50844112 50845177 -98671860 - Lx8 LINE L1 -5 7468 6333 5 972 432 0 0 0 chr6 50845177 50845225 -98671812 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 972 3426 278 99 25 chr6 50845225 50845357 -98671680 - Lx8 LINE L1 -1141 6332 6186 5 972 438 20 0 0 chr6 50845357 50845408 -98671629 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 972 3426 278 99 25 chr6 50845408 50845473 -98671564 - Lx8 LINE L1 -1288 6185 6112 5 972 249 341 39 13 chr6 50845815 50845998 -98671039 - L1M5 LINE L1 -1864 4279 4094 5 972 362 382 120 34 chr6 50846437 50847253 -98669784 + L2 LINE L2 1443 2328 -1091 5 972 186 316 116 29 chr6 50847292 50847465 -98669572 + L2 LINE L2 2286 2473 -946 5 972 242 158 0 0 chr6 50848123 50848161 -98668876 + L1MC4 LINE L1 7188 7225 -817 5 972 246 306 51 22 chr6 50848775 50848912 -98668125 + RMER15 LTR ERVL 1 141 -434 5 972 463 311 71 28 chr6 50849126 50849338 -98667699 + MT2A LTR ERVL 242 462 -71 5 972 259 312 121 21 chr6 50849410 50849551 -98667486 + RMER15 LTR ERVL 294 448 -127 5 972 369 213 213 0 chr6 50849572 50849708 -98667329 + RMER15 LTR ERVL 396 560 -15 5 972 724 125 8 8 chr6 50850650 50850779 -98666258 + (GAGAA)n Simple_repeat Simple_repeat 2 130 0 5 972 180 362 75 0 chr6 50852543 50852637 -98664400 - MIR SINE MIR -66 142 42 5 972 897 261 52 41 chr6 50852637 50853028 -98664009 + L1MB3 LINE L1 5586 5969 -214 5 972 1652 122 84 89 chr6 50853031 50853390 -98663647 + RLTR10B2 LTR ERVK 1 357 -8 5 972 299 210 12 72 chr6 50854158 50854241 -98662796 - B4 SINE B4 -14 278 228 5 972 462 263 138 76 chr6 50854291 50854424 -98662613 - B4 SINE B4 -67 225 74 5 972 2862 127 67 231 chr6 50854424 50855250 -98661787 + RMER6D LTR ERVK 1 692 -28 5 972 378 0 0 0 chr6 50855250 50855292 -98661745 + (CATCT)n Simple_repeat Simple_repeat 3 44 0 5 972 2862 127 67 231 chr6 50855292 50855322 -98661715 + RMER6D LTR ERVK 693 716 -4 5 972 462 263 138 76 chr6 50855322 50855398 -98661639 - B4 SINE B4 -219 73 3 5 972 385 294 76 6 chr6 50855541 50855712 -98661325 - L1MDb LINE L1 -4544 2089 1907 5 121 350 301 50 46 chr6 50855917 50856178 -98660859 - L1MDb LINE L1 -5035 1598 1334 5 973 2237 79 13 16 chr6 50856178 50856488 -98660549 + RLTR27 LTR ERVK 1 309 0 5 973 491 319 59 62 chr6 50856488 50856861 -98660176 - L1MDb LINE L1 -5202 1338 977 5 973 817 127 26 13 chr6 50857858 50858010 -98659027 + L1Md_F2 LINE L1 6426 6579 -3 5 973 195 42 0 0 chr6 50861013 50861037 -98656000 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 973 540 0 0 0 chr6 50861199 50861259 -98655778 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 973 414 206 9 69 chr6 50861340 50861471 -98655566 + MTD LTR MaLR 131 268 -151 5 973 28 48 0 0 chr6 50861630 50861672 -98655365 + AT_rich Low_complexity Low_complexity 1 42 0 5 973 373 215 40 23 chr6 50861677 50861853 -98655184 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 5 973 31 26 0 0 chr6 50861860 50861898 -98655139 + AT_rich Low_complexity Low_complexity 1 38 0 5 973 23 54 0 0 chr6 50862024 50862061 -98654976 + AT_rich Low_complexity Low_complexity 1 37 0 5 973 248 259 0 85 chr6 50862466 50862525 -98654512 + tRNA-Ala-GCY_ tRNA tRNA 3 56 -19 5 973 233 340 9 0 chr6 50862774 50862880 -98654157 - L2 LINE L2 -1403 2016 1910 5 973 225 224 118 0 chr6 50863207 50863283 -98653754 - L2 LINE L2 -1872 1547 1463 5 973 22 35 0 0 chr6 50863541 50863570 -98653467 + AT_rich Low_complexity Low_complexity 1 29 0 5 973 1703 210 52 30 chr6 50863985 50864636 -98652401 - RMER19C LTR ERVK 0 611 1 5 973 193 310 35 0 chr6 50864826 50864913 -98652124 + MIR SINE MIR 64 153 -55 5 973 261 0 0 0 chr6 50865584 50865613 -98651424 + (T)n Simple_repeat Simple_repeat 1 29 0 5 973 553 276 7 7 chr6 50866097 50866243 -98650794 - RSINE1 SINE B4 -18 147 2 5 973 202 350 67 26 chr6 50866448 50866718 -98650319 + L2a LINE L2 3011 3291 -135 5 973 189 0 0 0 chr6 50867122 50867143 -98649894 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 973 1133 105 70 32 chr6 50867280 50867467 -98649570 + B2_Mm2 SINE B2 2 195 0 5 973 401 304 50 30 chr6 50868544 50868744 -98648293 + MIRb SINE MIR 51 254 -14 5 973 236 98 24 0 chr6 50869869 50869910 -98647127 - MT2A LTR ERVL 0 533 492 5 973 315 146 0 0 chr6 50869914 50869969 -98647068 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 973 341 141 0 12 chr6 50869968 50870054 -98646983 + (TA)n Simple_repeat Simple_repeat 2 86 0 5 973 1127 195 154 165 chr6 50870107 50870534 -98646503 - MT2A LTR ERVL -84 449 27 5 973 3782 56 19 0 chr6 50870534 50871000 -98646037 - MT2C_Mm LTR ERVL 0 475 1 5 973 1127 195 154 165 chr6 50871000 50871026 -98646011 - MT2A LTR ERVL -507 26 1 5 973 22 56 0 0 chr6 50872234 50872270 -98644767 + AT_rich Low_complexity Low_complexity 1 36 0 5 973 597 125 591 3 chr6 50872876 50872973 -98644064 + ORR1C2 LTR MaLR 11 162 -184 5 973 875 65 0 8 chr6 50872973 50873097 -98643940 + (TCTCCC)n Simple_repeat Simple_repeat 5 127 0 5 973 964 174 46 1 chr6 50873097 50873277 -98643760 + ORR1C2 LTR MaLR 163 384 0 5 973 305 47 23 0 chr6 50873804 50873847 -98643190 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 5 973 378 197 26 0 chr6 50874403 50874520 -98642517 + CT-rich Low_complexity Low_complexity 2 121 0 5 973 768 206 97 6 chr6 50876886 50877062 -98639975 - B3A SINE B2 -6 192 1 5 973 328 269 80 51 chr6 50877380 50877517 -98639520 - Charlie16a DNA MER1_type -133 209 69 5 973 651 288 103 29 chr6 50877900 50878172 -98638865 + B4A SINE B4 1 292 0 5 973 244 202 12 25 chr6 50878819 50878900 -98638137 + GA-rich Low_complexity Low_complexity 1 80 0 5 973 305 278 96 30 chr6 50880635 50880802 -98636235 + L1MB7 LINE L1 5873 6050 -134 5 973 233 289 0 0 chr6 50880911 50880963 -98636074 - Lx8 LINE L1 -248 7225 7174 5 973 413 270 42 42 chr6 50880961 50881069 -98635968 + Lx7 LINE L1 7209 7317 -379 5 973 497 68 14 0 chr6 50881069 50881143 -98635894 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 973 413 270 42 42 chr6 50881143 50881177 -98635860 + Lx7 LINE L1 7318 7351 -345 5 973 699 73 66 6 chr6 50881194 50881543 -98635494 + (TG)n Simple_repeat Simple_repeat 1 370 0 5 973 373 309 18 6 chr6 50881770 50881939 -98635098 - Charlie4a DNA MER1_type -53 455 285 5 973 891 200 108 20 chr6 50882147 50882397 -98634640 + B4 SINE B4 2 273 -19 5 973 1327 153 37 0 chr6 50882439 50882655 -98634382 + Lx4A LINE L1 6817 7040 -18 5 973 323 295 38 0 chr6 50883341 50883446 -98633591 - PB1D10 SINE Alu -7 110 2 5 973 251 260 91 0 chr6 50885278 50885355 -98631682 - MER103 DNA DNA -72 94 11 5 973 336 48 0 0 chr6 50886084 50886126 -98630911 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 973 261 222 0 45 chr6 50888413 50888479 -98628558 + MIR SINE MIR 110 172 -90 5 973 403 276 19 9 chr6 50888818 50888924 -98628113 + Tigger5 DNA MER2_type 2300 2406 0 5 973 198 103 0 0 chr6 50888971 50889000 -98628037 + (A)n Simple_repeat Simple_repeat 1 29 0 5 973 23 54 0 0 chr6 50889294 50889331 -98627706 + AT_rich Low_complexity Low_complexity 1 37 0 5 973 1106 218 82 8 chr6 50889591 50889836 -98627201 - Lx8 LINE L1 -749 6724 6462 5 973 21 0 0 0 chr6 50889987 50890008 -98627029 + AT_rich Low_complexity Low_complexity 1 21 0 5 973 570 255 124 0 chr6 50890252 50890413 -98626624 - B3A SINE B2 -13 185 5 5 973 293 261 0 14 chr6 50890467 50890537 -98626500 - L1M5 LINE L1 -462 5662 5594 5 973 210 292 0 0 chr6 50891073 50891121 -98625916 + L3 LINE CR1 4430 4477 -12 5 973 238 185 0 44 chr6 50891567 50891635 -98625402 + (CATATA)n Simple_repeat Simple_repeat 5 69 0 5 973 219 311 75 28 chr6 50893383 50893489 -98623548 - MIRb SINE MIR -35 233 123 5 973 188 61 0 57 chr6 50893491 50893526 -98623511 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 5 973 195 125 0 0 chr6 50893733 50893773 -98623264 + (T)n Simple_repeat Simple_repeat 1 40 0 6 973 325 354 30 30 chr6 50893926 50894057 -98622980 - MER5A DNA MER1_type -36 153 23 6 973 319 372 39 0 chr6 50894107 50894209 -98622828 + MER5C1 DNA MER1_type 45 150 -113 6 973 1043 311 71 3 chr6 50895391 50895743 -98621294 + Tigger7 DNA MER2_type 21 396 -2095 6 973 340 200 0 0 chr6 50896500 50896555 -98620482 + ID4_ SINE ID 3 57 -26 6 973 1132 100 159 26 chr6 50898649 50898844 -98618193 + URR1B DNA MER1_type 5 225 0 6 973 396 350 8 0 chr6 50898867 50898987 -98618050 - MLT1H LTR MaLR -200 349 229 6 973 441 0 0 0 chr6 50900632 50900681 -98616356 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 973 387 0 0 0 chr6 50900681 50900723 -98616314 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 973 264 244 89 13 chr6 50900869 50900948 -98616089 - MIRb SINE MIR -149 119 35 6 973 995 232 0 0 chr6 50901994 50902171 -98614866 - B3 SINE B2 -38 178 2 6 973 522 184 38 28 chr6 50902679 50902785 -98614252 + B1F SINE Alu 40 146 -3 6 973 517 271 154 9 chr6 50902863 50903187 -98613850 + Charlie2b DNA MER1_type 2131 2501 -281 6 973 433 309 169 14 chr6 50903260 50903467 -98613570 + B4A SINE B4 51 289 -3 6 973 230 322 122 43 chr6 50903559 50903666 -98613371 + Charlie2b DNA MER1_type 2574 2683 -99 6 973 1200 96 0 0 chr6 50903666 50903884 -98613153 + (GAAA)n Simple_repeat Simple_repeat 1 218 0 6 973 230 322 122 43 chr6 50903884 50903963 -98613074 + Charlie2b DNA MER1_type 2684 2775 -7 6 973 736 276 158 18 chr6 50904039 50904312 -98612725 + MER44B DNA MER2_type 37 347 -203 6 973 290 292 0 20 chr6 50904308 50904406 -98612631 + Tigger7 DNA MER2_type 959 1054 -1437 6 973 279 307 13 26 chr6 50904406 50904483 -98612554 + Tigger7 DNA MER2_type 2412 2487 -4 6 973 2126 78 44 10 chr6 50904574 50904870 -98612167 - Lx LINE L1 -83 6571 6266 6 973 379 299 24 77 chr6 50905666 50905836 -98611201 + RSINE1 SINE B4 3 163 -2 6 973 406 278 18 18 chr6 50905849 50905959 -98611078 + PB1D10 SINE Alu 8 117 0 6 973 381 20 106 19 chr6 50906162 50906266 -98610771 + (TCCC)n Simple_repeat Simple_repeat 2 114 0 6 973 837 308 88 40 chr6 50908314 50908584 -98608453 - L1MB7 LINE L1 -22 6162 5867 6 973 3271 110 38 23 chr6 50908584 50909113 -98607924 - Lx4A LINE L1 0 7058 6522 6 973 837 308 88 40 chr6 50909113 50909295 -98607742 - L1MB7 LINE L1 -318 5866 5688 6 973 189 0 0 0 chr6 50913405 50913426 -98603611 + (A)n Simple_repeat Simple_repeat 1 21 0 6 973 186 71 0 0 chr6 50913804 50913832 -98603205 + (A)n Simple_repeat Simple_repeat 1 28 0 6 973 25 31 0 0 chr6 50914147 50914179 -98602858 + AT_rich Low_complexity Low_complexity 1 32 0 6 973 25 0 0 0 chr6 50914865 50914890 -98602147 + AT_rich Low_complexity Low_complexity 1 25 0 6 973 426 274 9 26 chr6 50915194 50915310 -98601727 - B1F SINE Alu -24 125 12 6 973 306 0 0 0 chr6 50915470 50915504 -98601533 + (AGGGGG)n Simple_repeat Simple_repeat 6 39 0 6 973 363 301 157 7 chr6 50915633 50915910 -98601127 - LTR37A LTR ERV1 -17 409 92 6 973 294 184 66 0 chr6 50916162 50916238 -98600799 - MER33 DNA MER1_type -23 301 221 6 973 246 281 0 17 chr6 50916343 50916401 -98600636 - MER33 DNA MER1_type -248 76 20 6 973 774 48 0 0 chr6 50917737 50917840 -98599197 + (TG)n Simple_repeat Simple_repeat 2 104 0 6 973 393 357 25 83 chr6 50919797 50920075 -98596962 + MER121 Unknown Unknown 151 412 0 6 973 239 274 164 19 chr6 50920252 50920356 -98596681 + MER110 LTR ERV1 261 379 -112 6 973 324 48 0 0 chr6 50920403 50920445 -98596592 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 973 426 39 0 0 chr6 50920544 50920596 -98596441 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 973 249 276 179 8 chr6 50921631 50921748 -98595289 - MIRb SINE MIR -114 154 18 6 973 213 342 80 99 chr6 50922098 50922260 -98594777 + MIRc SINE MIR 61 219 -49 6 973 215 289 68 0 chr6 50924083 50924171 -98592866 + MIR SINE MIR 70 168 -100 6 973 335 290 0 79 chr6 50924343 50924444 -98592593 + PB1D10 SINE Alu 25 117 0 6 973 241 145 0 83 chr6 50924449 50924509 -98592528 + GA-rich Low_complexity Low_complexity 4 58 0 6 973 366 258 67 15 chr6 50924509 50924643 -98592394 + MER45B DNA Tip100 722 862 -178 6 973 288 258 0 0 chr6 50925562 50925624 -98591413 + Charlie1b DNA MER1_type 462 523 0 6 973 444 51 0 0 chr6 50926362 50926421 -98590616 + (TTCA)n Simple_repeat Simple_repeat 4 62 0 6 973 657 335 21 49 chr6 50927203 50927489 -98589548 - Tigger15a DNA TcMar -253 462 185 6 973 287 300 16 8 chr6 50927502 50927623 -98589414 - Tigger15a DNA TcMar -585 130 9 6 973 427 177 0 20 chr6 50928413 50928511 -98588526 + GA-rich Low_complexity Low_complexity 2 97 0 6 973 207 0 0 0 chr6 50928998 50929021 -98588016 + (T)n Simple_repeat Simple_repeat 1 23 0 6 973 252 315 0 27 chr6 50930007 50930082 -98586955 - PB1D7 SINE Alu 0 120 48 6 973 546 307 0 63 chr6 50930217 50930391 -98586646 - RSINE1 SINE B4 0 165 3 6 973 337 311 134 0 chr6 50931381 50931500 -98585537 + MIR SINE MIR 14 148 -114 6 973 252 0 0 0 chr6 50932603 50932631 -98584406 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 973 341 132 0 24 chr6 50932632 50932717 -98584320 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 6 973 257 222 0 40 chr6 50932733 50932808 -98584229 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 973 261 0 0 0 chr6 50934011 50934040 -98582997 + (T)n Simple_repeat Simple_repeat 1 29 0 6 973 354 275 118 20 chr6 50935838 50936042 -98580995 + L1MC5 LINE L1 7595 7818 -143 6 973 260 298 78 31 chr6 50936261 50936389 -98580648 + MER20 DNA MER1_type 79 212 -7 6 973 225 247 206 0 chr6 50936884 50936981 -98580056 + MIRc SINE MIR 15 131 -137 6 973 333 281 49 19 chr6 50936981 50937105 -98579932 + MIRb SINE MIR 13 147 -121 6 973 198 0 0 0 chr6 50937980 50938002 -98579035 + (A)n Simple_repeat Simple_repeat 1 22 0 6 973 495 407 30 0 chr6 50938911 50939147 -98577890 + MIR SINE MIR 6 248 -14 6 973 245 336 55 20 chr6 50939503 50939649 -98577388 + MER20 DNA MER1_type 49 199 -20 6 973 216 0 0 0 chr6 50939919 50939943 -98577094 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 973 211 357 116 47 chr6 50939945 50940221 -98576816 + L2c LINE L2 3091 3385 -2 6 973 375 217 22 13 chr6 50940772 50940878 -98576159 - B1F SINE Alu -7 140 34 6 973 221 323 134 20 chr6 50941199 50941401 -98575636 + MIRb SINE MIR 14 238 -30 6 973 238 191 22 209 chr6 50943021 50943160 -98573877 - Charlie24 DNA MER1_type -2008 442 330 6 973 205 352 52 59 chr6 50943480 50943616 -98573421 - L2c LINE L2 -232 3155 3021 6 973 183 80 0 0 chr6 50947062 50947087 -98569950 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 973 1342 45 0 22 chr6 50948334 50948518 -98568519 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 6 973 1058 84 28 0 chr6 50950240 50950383 -98566654 - B1_Mus1 SINE Alu -1 147 1 6 973 443 226 19 19 chr6 50951025 50951133 -98565904 - PB1D10 SINE Alu -7 110 3 6 973 800 216 85 5 chr6 50951173 50951373 -98565664 + B3 SINE B2 1 216 0 6 973 260 37 55 18 chr6 50951879 50951934 -98565103 + (CAAAAA)n Simple_repeat Simple_repeat 6 62 0 6 973 21 36 0 0 chr6 50952127 50952155 -98564882 + AT_rich Low_complexity Low_complexity 1 28 0 6 973 180 111 0 0 chr6 50952714 50952741 -98564296 + (A)n Simple_repeat Simple_repeat 1 27 0 6 973 200 322 23 11 chr6 50953836 50953924 -98563113 + GA-rich Low_complexity Low_complexity 1 89 0 6 973 294 29 0 0 chr6 50955481 50955516 -98561521 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 973 180 111 0 0 chr6 50956767 50956794 -98560243 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 6 973 198 103 0 0 chr6 50958465 50958494 -98558543 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 973 324 0 0 0 chr6 50958494 50958529 -98558508 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 973 288 53 0 0 chr6 50958941 50958979 -98558058 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 973 493 315 121 26 chr6 50962007 50962620 -98554417 - L2 LINE L2 -656 2763 2093 6 973 228 300 17 0 chr6 50963671 50963731 -98553306 + GA-rich Low_complexity Low_complexity 3 63 0 6 973 29 0 0 0 chr6 50963911 50963940 -98553097 + AT_rich Low_complexity Low_complexity 1 29 0 6 973 617 158 9 9 chr6 50963940 50964055 -98552982 - Lx4A LINE L1 -2 7056 6942 6 973 263 270 144 14 chr6 50964055 50964194 -98552843 + L1MC5 LINE L1 7610 7766 -195 6 973 279 0 0 0 chr6 50964377 50964408 -98552629 + (T)n Simple_repeat Simple_repeat 1 31 0 6 973 447 19 0 0 chr6 50966424 50966476 -98550561 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 973 242 116 23 0 chr6 50968483 50968526 -98548511 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 973 630 0 0 0 chr6 50968527 50968597 -98548440 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 6 973 436 331 18 30 chr6 50968919 50969087 -98547950 + MER20 DNA MER1_type 47 212 -7 6 973 914 285 163 30 chr6 50970198 50970733 -98546304 + L1MC2 LINE L1 5704 6309 -35 6 973 213 65 0 0 chr6 50970748 50970779 -98546258 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 6 973 23 0 0 0 chr6 50972145 50972168 -98544869 + AT_rich Low_complexity Low_complexity 1 23 0 6 973 754 47 19 9 chr6 50974022 50974129 -98542908 + (TCTCCC)n Simple_repeat Simple_repeat 3 110 0 6 973 359 211 0 10 chr6 50974155 50974251 -98542786 + CT-rich Low_complexity Low_complexity 3 97 0 6 973 786 254 43 19 chr6 50974280 50974489 -98542548 - B3 SINE B2 0 216 3 6 973 287 330 45 0 chr6 50974498 50974610 -98542427 - MLT1J LTR MaLR -187 325 209 6 973 261 237 17 0 chr6 50975354 50975413 -98541624 - B4 SINE B4 -185 107 48 6 973 1722 241 13 7 chr6 50975521 50975933 -98541104 - MTD LTR MaLR -14 405 3 6 973 300 27 0 0 chr6 50976533 50976570 -98540467 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 6 973 202 333 0 0 chr6 50976757 50976805 -98540232 + polypurine Low_complexity Low_complexity 4 51 0 7 973 264 274 0 101 chr6 50977937 50978006 -98539031 + ID4_ SINE ID 18 79 -4 7 973 288 0 0 0 chr6 50978010 50978042 -98538995 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 973 243 0 0 0 chr6 50980688 50980715 -98536322 + (A)n Simple_repeat Simple_repeat 1 27 0 7 973 423 0 0 0 chr6 50981001 50981048 -98535989 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 973 365 341 155 42 chr6 50981116 50981389 -98535648 + MLT1A LTR MaLR 1 311 -63 7 973 237 33 0 0 chr6 50981389 50981419 -98535618 + (CAA)n Simple_repeat Simple_repeat 1 30 0 7 973 365 341 155 42 chr6 50981419 50981454 -98535583 + MLT1A LTR MaLR 312 344 -30 7 973 1491 305 57 39 chr6 50982807 50983427 -98533610 - Lx8 LINE L1 0 7473 6843 7 973 753 208 125 112 chr6 50983427 50983714 -98533323 + MTD LTR MaLR 72 362 -57 7 973 1708 270 18 5 chr6 50983730 50984176 -98532861 - Lx8 LINE L1 -617 6856 6405 7 973 915 333 46 127 chr6 50984236 50985282 -98531755 - Charlie1 DNA MER1_type -245 2536 1576 7 973 547 271 96 24 chr6 50985457 50985665 -98531372 - MER2 DNA MER2_type -3 342 120 7 973 405 0 0 0 chr6 50986465 50986510 -98530527 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 974 511 259 12 76 chr6 50988430 50988601 -98528436 - RSINE1 SINE B4 -4 161 2 7 974 484 264 8 16 chr6 50991333 50991460 -98525577 + RSINE1 SINE B4 11 136 -29 7 974 982 67 18 18 chr6 50991471 50991638 -98525399 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 7 974 294 263 0 0 chr6 50991643 50991700 -98525337 + B4A SINE B4 224 280 -12 7 974 218 265 0 0 chr6 50991745 50991794 -98525243 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 974 650 277 209 6 chr6 50992700 50993016 -98524021 + MLT1A1 LTR MaLR 26 405 -3 7 974 612 0 0 0 chr6 50995959 50996027 -98521010 + (CAGAA)n Simple_repeat Simple_repeat 3 70 0 7 974 1689 310 69 52 chr6 50996056 50997448 -98519589 - L1MC4a LINE L1 -56 7939 6484 7 974 567 0 0 0 chr6 50997470 50997533 -98519504 + (CCCTAA)n Simple_repeat Simple_repeat 2 64 0 7 974 523 322 90 44 chr6 50997536 50997811 -98519226 - L1MD LINE L1 -1832 4314 4014 7 974 405 39 0 0 chr6 50997811 50997862 -98519175 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 974 523 326 93 41 chr6 50997862 50998185 -98518852 - L1MD LINE L1 -2133 4013 3669 7 974 189 354 61 0 chr6 50998563 50998645 -98518392 - MIRb SINE MIR -147 121 35 7 974 40 0 0 0 chr6 50999481 50999521 -98517516 + AT_rich Low_complexity Low_complexity 1 40 0 7 974 1013 214 0 45 chr6 51001333 51001553 -98515484 + B3 SINE B2 1 210 -6 1 974 184 0 62 31 chr6 51002058 51002090 -98514947 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 974 258 32 0 0 chr6 51002991 51003022 -98514015 + (A)n Simple_repeat Simple_repeat 1 31 0 3 974 492 18 0 0 chr6 51003166 51003223 -98513814 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 974 829 250 89 12 chr6 51003388 51003647 -98513390 + B4A SINE B4 14 292 0 5 974 441 356 43 4 chr6 51003731 51003962 -98513075 + B4A SINE B4 2 241 -51 6 974 232 48 48 0 chr6 51004827 51004869 -98512168 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 7 974 836 166 7 14 chr6 51004979 51005126 -98511911 + B1_Mus2 SINE Alu 1 146 -1 8 974 299 130 19 0 chr6 51005147 51005201 -98511836 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 9 974 805 94 18 30 chr6 51005195 51005360 -98511677 + (GAA)n Simple_repeat Simple_repeat 3 165 0 1 974 561 30 0 0 chr6 51006195 51006262 -98510775 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 974 435 38 0 0 chr6 51006610 51006663 -98510374 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 974 359 317 0 0 chr6 51007849 51007953 -98509084 - MER3 DNA MER1_type -105 104 1 1 974 236 366 62 31 chr6 51008574 51008670 -98508367 + ID_B1 SINE B4 78 176 -48 1 974 369 281 61 20 chr6 51008594 51008692 -98508345 + PB1D10 SINE Alu 14 115 -2 1 974 279 0 0 0 chr6 51009779 51009810 -98507227 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 974 513 0 0 0 chr6 51009810 51009866 -98507171 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 974 24 0 0 0 chr6 51014054 51014078 -98502959 + AT_rich Low_complexity Low_complexity 1 24 0 1 974 435 275 30 149 chr6 51014283 51014327 -98502710 + MER2 DNA MER2_type 131 170 -175 1 974 243 0 0 0 chr6 51014327 51014354 -98502683 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 974 1175 36 0 0 chr6 51014354 51014492 -98502545 - B1_Mus1 SINE Alu -9 139 2 2 974 435 275 30 149 chr6 51014492 51014681 -98502356 + MER2 DNA MER2_type 171 336 -9 1 974 779 329 11 0 chr6 51015131 51015405 -98501632 + L3b LINE CR1 140 416 -66 2 974 722 224 0 0 chr6 51015739 51015882 -98501155 - B3A SINE B2 -55 143 1 2 974 450 0 0 0 chr6 51016629 51016679 -98500358 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 974 216 0 0 0 chr6 51019096 51019120 -98497917 + (A)n Simple_repeat Simple_repeat 1 24 0 2 974 228 233 0 0 chr6 51019460 51019503 -98497534 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 974 183 80 0 0 chr6 51021150 51021175 -98495862 + (TTC)n Simple_repeat Simple_repeat 3 27 0 2 974 384 88 0 0 chr6 51022478 51022535 -98494502 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 974 234 294 41 32 chr6 51023406 51023529 -98493508 + PB1 SINE Alu 1 124 -3 2 974 499 265 90 42 chr6 51023865 51024054 -98492983 + B3A SINE B2 1 198 0 3 974 1698 11 21 0 chr6 51024274 51024463 -98492574 + B2_Mm1a SINE B2 1 193 0 3 974 189 0 0 0 chr6 51024483 51024504 -98492533 + (A)n Simple_repeat Simple_repeat 1 21 0 3 974 241 278 14 0 chr6 51025544 51025616 -98491421 + ID4_ SINE ID 6 78 -5 3 974 381 43 0 0 chr6 51027575 51027622 -98489415 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 974 887 211 13 80 chr6 51032298 51032524 -98484513 + B3 SINE B2 1 211 -5 3 974 21 71 0 0 chr6 51032528 51032570 -98484467 + AT_rich Low_complexity Low_complexity 1 42 0 3 974 477 292 101 0 chr6 51033254 51033422 -98483615 - LTR16D LTR ERVL -4 647 463 3 974 717 144 20 0 chr6 51035151 51035297 -98481740 + CT-rich Low_complexity Low_complexity 2 150 0 3 974 247 319 0 60 chr6 51035898 51035998 -98481039 + MLT1K LTR MaLR 453 546 -49 3 974 1122 68 0 7 chr6 51036672 51036819 -98480218 + B1_Mm SINE Alu 1 146 -1 4 974 588 121 0 0 chr6 51036819 51036910 -98480127 + (GA)n Simple_repeat Simple_repeat 1 91 0 4 974 7649 1 0 0 chr6 51036943 51037769 -98479268 + L1Md_A LINE L1 5757 6582 0 4 974 22 0 0 0 chr6 51037831 51037853 -98479184 + AT_rich Low_complexity Low_complexity 1 22 0 4 974 867 222 64 0 chr6 51038264 51038467 -98478570 + MT2A LTR ERVL 1 216 -317 4 974 25 0 0 0 chr6 51038675 51038700 -98478337 + AT_rich Low_complexity Low_complexity 1 25 0 4 974 207 100 0 0 chr6 51038971 51039001 -98478036 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 4 974 448 316 58 0 chr6 51039271 51039442 -98477595 - Lx8 LINE L1 -556 6917 6737 4 974 707 233 41 15 chr6 51039844 51040040 -98476997 + L1MA8 LINE L1 6087 6287 -4 4 974 224 276 0 17 chr6 51040143 51040202 -98476835 + CT-rich Low_complexity Low_complexity 5 62 0 4 974 575 169 17 0 chr6 51040215 51040333 -98476704 + (CATATA)n Simple_repeat Simple_repeat 6 125 0 5 974 641 243 128 31 chr6 51040849 51041044 -98475993 - B3 SINE B2 0 216 3 5 974 306 265 15 0 chr6 51041230 51041298 -98475739 + ID4 SINE ID 1 69 -14 5 974 879 179 0 0 chr6 51041884 51042238 -98474799 + (CA)n Simple_repeat Simple_repeat 1 354 0 5 974 1736 200 76 146 chr6 51042445 51043101 -98473936 + RMER19C LTR ERVK 1 610 -1 5 974 242 346 29 32 chr6 51043159 51043328 -98473709 - MIR SINE MIR -88 180 15 5 974 473 314 45 94 chr6 51043423 51043690 -98473347 + MLT1E1 LTR MaLR 350 603 -51 5 974 447 277 161 19 chr6 51045220 51045481 -98471556 + MLT1A0 LTR MaLR 13 310 -55 5 974 267 193 18 0 chr6 51045843 51045900 -98471137 + MLT1A0 LTR MaLR 305 362 -3 5 974 189 286 121 10 chr6 51046735 51046834 -98470203 - MIR SINE MIR -69 193 84 5 974 227 330 36 54 chr6 51048353 51048465 -98468572 + ORR1D1 LTR MaLR 3 112 -262 5 974 534 222 34 0 chr6 51049088 51049205 -98467832 + B3 SINE B2 96 216 0 6 974 642 315 115 21 chr6 51050421 51050794 -98466243 - MLT2D LTR ERVL -6 408 1 6 974 2058 138 11 40 chr6 51051080 51051450 -98465587 + ORR1B2 LTR MaLR 1 359 -8 6 974 434 284 40 26 chr6 51052385 51052537 -98464500 + MLT1A0 LTR MaLR 1 154 -211 6 974 383 259 0 77 chr6 51052546 51052663 -98464374 + PB1D10 SINE Alu 10 117 0 6 974 287 288 35 26 chr6 51052816 51052930 -98464107 + MLT1A0 LTR MaLR 259 373 -1 6 974 994 148 0 13 chr6 51053990 51054217 -98462820 + GA-rich Low_complexity Low_complexity 1 223 0 6 974 765 33 0 0 chr6 51055523 51055615 -98461422 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 974 247 358 33 49 chr6 51055714 51055958 -98461079 - L2c LINE L2 -76 3311 3072 6 974 408 231 108 25 chr6 51056110 51056230 -98460807 - MER58A DNA MER1_type -62 162 33 6 974 369 0 0 0 chr6 51056638 51056679 -98460358 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 974 396 0 0 0 chr6 51056679 51056722 -98460315 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 974 1034 200 48 10 chr6 51057559 51057766 -98459271 + B3 SINE B2 2 216 0 7 974 525 32 0 0 chr6 51057800 51057863 -98459174 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 974 1196 135 109 10 chr6 51059373 51059575 -98457462 + URR1A DNA MER1_type 5 226 0 7 974 722 255 142 21 chr6 51059576 51059717 -98457320 + Lx9 LINE L1 7320 7476 -168 7 974 531 26 39 0 chr6 51059717 51059794 -98457243 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 7 974 722 255 142 21 chr6 51059794 51059940 -98457097 + Lx9 LINE L1 7477 7642 -2 7 974 584 180 8 0 chr6 51059943 51060065 -98456972 + CT-rich Low_complexity Low_complexity 1 123 0 7 974 259 114 0 0 chr6 51060065 51060100 -98456937 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 7 974 639 47 0 0 chr6 51060396 51060481 -98456556 + B1_Mus2 SINE Alu 57 141 -6 7 974 279 0 0 0 chr6 51060484 51060515 -98456522 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 974 3468 264 114 25 chr6 51060550 51061665 -98455372 + Lx8 LINE L1 6196 7409 -64 8 974 352 278 0 0 chr6 51061689 51061786 -98455251 + B4A SINE B4 186 282 -10 8 974 314 225 11 42 chr6 51061797 51062057 -98454980 + (CA)n Simple_repeat Simple_repeat 1 251 0 8 974 871 257 256 52 chr6 51062248 51062427 -98454610 + L1ME3 LINE L1 2545 2737 -3409 8 974 697 20 29 0 chr6 51062427 51062529 -98454508 + L1Md_F2 LINE L1 6475 6579 -3 8 974 871 257 256 52 chr6 51062529 51063133 -98453904 + L1ME3 LINE L1 2738 3487 -2659 8 974 794 123 14 0 chr6 51063234 51063372 -98453665 + (GGGA)n Simple_repeat Simple_repeat 1 140 0 8 974 372 278 74 84 chr6 51063518 51063816 -98453221 + L1ME3 LINE L1 3720 4014 -2132 8 974 733 222 144 0 chr6 51064099 51064279 -98452758 + B3 SINE B2 10 215 -1 8 974 402 313 145 29 chr6 51064390 51064798 -98452239 + L1ME3 LINE L1 4388 4842 -1304 8 974 273 320 32 0 chr6 51065066 51065160 -98451877 + BC1_Mm scRNA scRNA 3 99 -53 8 974 346 259 45 0 chr6 51065295 51065407 -98451630 + L1ME3 LINE L1 5334 5450 -712 8 974 484 329 48 80 chr6 51065416 51065753 -98451284 + MLT1B LTR MaLR 1 326 -64 8 974 342 343 65 39 chr6 51065938 51066277 -98450760 + L1ME3 LINE L1 5716 6114 -48 8 974 243 146 0 0 chr6 51067782 51067823 -98449214 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 8 974 702 189 29 8 chr6 51067823 51068070 -98448967 + (CA)n Simple_repeat Simple_repeat 1 252 0 9 974 696 251 171 4 chr6 51068418 51068658 -98448379 - B4 SINE B4 -11 281 2 9 974 522 0 0 0 chr6 51069516 51069574 -98447463 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 974 901 236 67 0 chr6 51071008 51071203 -98445834 + B3 SINE B2 3 210 -6 9 974 266 277 42 51 chr6 51071600 51071718 -98445319 - PB1D10 SINE Alu 0 117 1 9 974 367 143 39 0 chr6 51072224 51072301 -98444736 + GA-rich Low_complexity Low_complexity 4 83 0 9 974 225 0 0 0 chr6 51073462 51073487 -98443550 + (GA)n Simple_repeat Simple_repeat 2 26 0 9 974 22 0 0 0 chr6 51073499 51073521 -98443516 + AT_rich Low_complexity Low_complexity 1 22 0 9 974 251 28 28 0 chr6 51073546 51073582 -98443455 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 974 396 0 0 0 chr6 51073582 51073625 -98443412 + (GA)n Simple_repeat Simple_repeat 2 45 0 9 974 2027 109 74 31 chr6 51073733 51074084 -98442953 - Lx LINE L1 0 6654 6289 1 974 22 0 0 0 chr6 51074183 51074205 -98442832 + AT_rich Low_complexity Low_complexity 1 22 0 1 974 25 0 0 0 chr6 51074746 51074771 -98442266 + AT_rich Low_complexity Low_complexity 1 25 0 1 974 2425 110 75 8 chr6 51075430 51075806 -98441231 - RMER1C Other Other -21 1321 921 1 974 344 348 9 0 chr6 51076495 51076607 -98440430 + B1F SINE Alu 37 149 0 1 974 933 127 14 7 chr6 51076830 51076973 -98440064 + B1_Mur3 SINE Alu 1 144 -5 1 974 419 233 0 0 chr6 51077095 51077181 -98439856 + Lx8 LINE L1 6383 6468 -1005 1 974 242 339 45 28 chr6 51077975 51078151 -98438886 + AmnSINE1 SINE SINE 209 387 -188 1 974 524 175 52 0 chr6 51078695 51078792 -98438245 + B1_Mur2 SINE Alu 48 149 0 1 974 1014 31 0 0 chr6 51078948 51079078 -98437959 - B1_Mm SINE Alu 0 147 18 1 974 324 232 20 0 chr6 51080516 51080615 -98436422 + L1M3 LINE L1 4379 4479 -1661 1 974 232 244 43 32 chr6 51080825 51080918 -98436119 + L1ME2 LINE L1 2626 2719 -3427 1 974 192 97 0 0 chr6 51080957 51080988 -98436049 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 974 504 0 0 0 chr6 51081019 51081075 -98435962 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 974 383 267 0 0 chr6 51081109 51081195 -98435842 - B3A SINE B2 -111 87 2 1 974 1270 278 75 28 chr6 51081205 51081779 -98435258 + L1ME2 LINE L1 2777 3377 -2769 1 974 303 160 121 68 chr6 51081828 51081961 -98435076 - Lx7 LINE L1 -18 7678 7565 1 974 486 0 0 0 chr6 51082029 51082083 -98434954 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 974 5173 277 41 22 chr6 51082093 51083658 -98433379 - Lx7 LINE L1 -395 7301 5707 1 974 2308 225 41 38 chr6 51083653 51084024 -98433013 - Lx7 LINE L1 -318 5562 5200 1 974 1488 240 24 99 chr6 51084024 51084273 -98432764 - MTD LTR MaLR 0 419 210 1 974 485 303 14 0 chr6 51084273 51084418 -98432619 - B1_Mur2 SINE Alu -2 147 1 1 974 1488 240 24 99 chr6 51084418 51084621 -98432416 - MTD LTR MaLR -210 209 1 1 974 2308 225 41 38 chr6 51084621 51084854 -98432183 - Lx7 LINE L1 -681 5199 4956 1 974 352 301 18 14 chr6 51084885 51085004 -98432033 + B1F1 SINE Alu 1 117 -3 1 974 1374 291 74 58 chr6 51085037 51086025 -98431012 + L1ME2 LINE L1 3482 4485 -1661 1 974 369 301 18 0 chr6 51086181 51086294 -98430743 + PB1D10 SINE Alu 3 117 0 1 974 631 311 48 31 chr6 51086348 51086640 -98430397 + L1ME2 LINE L1 4624 4920 -1226 1 974 256 226 94 12 chr6 51086803 51086888 -98430149 + L1ME2 LINE L1 5636 5727 -452 1 974 506 262 0 24 chr6 51086891 51087016 -98430021 + RSINE1 SINE B4 1 122 -43 1 974 459 0 0 0 chr6 51087021 51087072 -98429965 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 974 319 288 13 24 chr6 51087142 51087337 -98429700 + L1ME2 LINE L1 5685 5905 -259 1 974 304 289 106 35 chr6 51087423 51087700 -98429337 + MLT1A LTR MaLR 58 451 -16 1 974 812 207 93 5 chr6 51088043 51088237 -98428800 + B3 SINE B2 2 212 -4 1 974 790 202 28 69 chr6 51088410 51088628 -98428409 + B3 SINE B2 2 210 -6 1 974 282 319 0 0 chr6 51088687 51088754 -98428283 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 974 2098 108 6 85 chr6 51088754 51089108 -98427929 + ORR1A3 LTR MaLR 1 326 0 1 974 1280 59 6 0 chr6 51089109 51089279 -98427758 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 1 974 282 319 0 0 chr6 51089279 51089300 -98427737 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 974 846 0 0 0 chr6 51091100 51091194 -98425843 + (GAA)n Simple_repeat Simple_repeat 1 94 0 1 974 189 189 0 0 chr6 51092079 51092116 -98424921 + L2c LINE L2 3043 3079 -308 1 974 404 301 68 19 chr6 51093543 51093810 -98423227 + L1MB8 LINE L1 5762 6039 -145 1 974 270 284 0 0 chr6 51093922 51094003 -98423034 + GA-rich Low_complexity Low_complexity 3 83 0 1 974 930 119 0 0 chr6 51094015 51094158 -98422879 + (GAA)n Simple_repeat Simple_repeat 3 145 0 1 974 254 349 0 0 chr6 51094212 51094298 -98422739 - RMER15 LTR ERVL -117 458 373 1 974 289 301 45 0 chr6 51094395 51094528 -98422509 + L1MB8 LINE L1 6031 6169 -9 1 974 261 167 0 0 chr6 51096493 51096547 -98420490 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 974 21 0 0 0 chr6 51096585 51096606 -98420431 + AT_rich Low_complexity Low_complexity 1 21 0 1 974 330 169 0 0 chr6 51096910 51096975 -98420062 + (TAGG)n Simple_repeat Simple_repeat 2 66 0 1 974 248 229 0 0 chr6 51096976 51097024 -98420013 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 1 974 488 59 15 0 chr6 51097025 51097093 -98419944 + (CATA)n Simple_repeat Simple_repeat 3 71 0 1 974 635 265 7 0 chr6 51097103 51097239 -98419798 - B1_Mur1 SINE Alu -12 137 1 1 974 198 0 0 0 chr6 51097335 51097357 -98419680 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 974 904 120 254 14 chr6 51097459 51097508 -98419529 + Lx9 LINE L1 7372 7420 -224 1 974 477 0 0 0 chr6 51097508 51097561 -98419476 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 974 904 120 254 14 chr6 51097561 51097731 -98419306 + Lx9 LINE L1 7421 7643 -1 1 974 200 100 62 77 chr6 51099852 51099917 -98417120 + (TTAAA)n Simple_repeat Simple_repeat 2 65 0 1 974 505 202 89 0 chr6 51101091 51101215 -98415822 + L1MB5 LINE L1 5698 5832 -342 1 974 183 42 0 0 chr6 51101703 51101727 -98415310 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 974 567 273 80 23 chr6 51103430 51103606 -98413431 + B4 SINE B4 34 219 -73 1 974 235 177 0 31 chr6 51103651 51103715 -98413322 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 974 933 76 121 0 chr6 51103840 51103972 -98413065 + B1_Mus1 SINE Alu 1 148 0 1 974 213 65 0 0 chr6 51103972 51104003 -98413034 + (A)n Simple_repeat Simple_repeat 1 31 0 1 974 398 253 108 14 chr6 51104685 51104833 -98412204 - B3A SINE B2 -1 197 36 1 974 214 182 364 0 chr6 51105357 51105434 -98411603 + B1F1 SINE Alu 1 105 -44 1 974 198 71 0 0 chr6 51105532 51105560 -98411477 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 1 974 247 0 25 50 chr6 51105592 51105632 -98411405 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 974 1151 70 0 14 chr6 51105632 51105769 -98411268 - B1_Mm SINE Alu -10 137 1 1 974 240 299 13 13 chr6 51105812 51105890 -98411147 + B4A SINE B4 131 208 -84 1 974 248 276 0 73 chr6 51105961 51106043 -98410994 + B4 SINE B4 204 279 -13 1 974 568 322 6 0 chr6 51106131 51106308 -98410729 - MER58A DNA MER1_type 0 224 47 1 974 339 164 0 69 chr6 51107884 51107946 -98409091 + B1_Mur2 SINE Alu 83 141 -8 1 974 411 73 0 0 chr6 51107946 51108001 -98409036 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 1 974 8288 40 2 5 chr6 51109450 51110449 -98406588 + L1Md_F2 LINE L1 5587 6582 0 1 974 262 288 150 60 chr6 51110523 51110621 -98406416 + RSINE1 SINE B4 16 126 -39 1 974 603 0 0 0 chr6 51110621 51110688 -98406349 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 974 262 288 150 60 chr6 51110688 51110722 -98406315 + RSINE1 SINE B4 127 160 -5 1 974 302 238 148 12 chr6 51111943 51112024 -98405013 + PB1D10 SINE Alu 25 116 -1 1 974 396 0 0 0 chr6 51112116 51112160 -98404877 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 974 339 113 0 0 chr6 51113691 51113744 -98403293 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1 974 42 0 0 0 chr6 51113860 51113902 -98403135 + AT_rich Low_complexity Low_complexity 1 42 0 1 974 322 271 73 18 chr6 51114777 51114886 -98402151 + PB1D10 SINE Alu 3 117 0 1 974 687 316 39 13 chr6 51115041 51115349 -98401688 + MER33 DNA MER1_type 1 316 -8 1 974 577 239 0 17 chr6 51116794 51116913 -98400124 - PB1D7 SINE Alu 0 120 4 1 974 335 0 0 62 chr6 51117001 51117049 -98399988 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 1 974 1022 109 0 7 chr6 51117669 51117806 -98399231 + B1_Mm SINE Alu 2 137 -10 1 974 365 53 0 18 chr6 51117806 51117863 -98399174 + (CAAA)n Simple_repeat Simple_repeat 3 58 0 1 975 515 16 16 0 chr6 51118527 51118591 -98398446 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 1 975 195 184 26 0 chr6 51118594 51118632 -98398405 - MIR SINE MIR -64 144 106 1 975 204 135 0 26 chr6 51120761 51120799 -98396238 + A-rich Low_complexity Low_complexity 6 42 0 1 975 195 42 0 0 chr6 51122203 51122227 -98394810 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 975 428 200 8 0 chr6 51122794 51122914 -98394123 + CT-rich Low_complexity Low_complexity 2 122 0 1 975 226 204 0 36 chr6 51125242 51125298 -98391739 + A-rich Low_complexity Low_complexity 2 55 0 1 975 226 293 0 17 chr6 51125320 51125379 -98391658 + B1_Mus1 SINE Alu 40 97 -51 1 975 183 156 0 0 chr6 51126202 51126234 -98390803 + A-rich Low_complexity Low_complexity 1 32 0 1 975 183 80 0 0 chr6 51126845 51126870 -98390167 + (T)n Simple_repeat Simple_repeat 1 25 0 1 975 325 297 26 26 chr6 51127309 51127423 -98389614 + PB1D10 SINE Alu 2 115 -2 1 975 297 284 0 0 chr6 51128476 51128557 -98388480 + C-rich Low_complexity Low_complexity 1 81 0 1 975 180 0 0 0 chr6 51128892 51128912 -98388125 + (A)n Simple_repeat Simple_repeat 1 20 0 1 975 243 0 0 0 chr6 51129615 51129642 -98387395 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 975 237 65 0 0 chr6 51132052 51132083 -98384954 + (A)n Simple_repeat Simple_repeat 1 31 0 1 975 1093 57 0 7 chr6 51132374 51132515 -98384522 + B1_Mus1 SINE Alu 9 148 0 1 975 21 36 0 0 chr6 51132728 51132756 -98384281 + AT_rich Low_complexity Low_complexity 1 28 0 1 975 267 31 0 0 chr6 51133310 51133342 -98383695 + (TCC)n Simple_repeat Simple_repeat 2 33 0 1 975 261 0 0 0 chr6 51133498 51133527 -98383510 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 975 381 43 0 0 chr6 51134310 51134357 -98382680 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 1 975 479 331 50 19 chr6 51134573 51134835 -98382202 - MER121 Unknown Unknown -81 331 62 1 975 324 292 92 35 chr6 51135695 51135837 -98381200 + MIR SINE MIR 37 186 -76 1 975 804 163 37 0 chr6 51135909 51136044 -98380993 - B1_Mur2 SINE Alu -5 144 5 1 975 405 0 0 0 chr6 51136070 51136115 -98380922 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 975 512 270 20 33 chr6 51136121 51136274 -98380763 - RSINE1 SINE B4 -13 152 2 1 975 309 125 0 0 chr6 51136283 51136339 -98380698 + (CTTG)n Simple_repeat Simple_repeat 4 59 0 1 975 244 232 0 18 chr6 51136574 51136631 -98380406 + L2a LINE L2 3371 3426 0 1 975 404 19 19 0 chr6 51136835 51136888 -98380149 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 975 762 227 27 0 chr6 51137735 51137885 -98379152 + ID_B1 SINE B4 50 203 -21 2 975 347 173 12 0 chr6 51137889 51137970 -98379067 + GA-rich Low_complexity Low_complexity 4 85 0 2 975 225 0 0 0 chr6 51138085 51138110 -98378927 + (TGG)n Simple_repeat Simple_repeat 2 26 0 2 975 247 260 53 27 chr6 51140289 51140364 -98376673 + MER76 LTR ERVL 275 351 -340 2 975 370 323 101 23 chr6 51140423 51140636 -98376401 + MIRm SINE MIR 2 231 -37 2 975 506 281 0 75 chr6 51141258 51141404 -98375633 + B1_Mur1 SINE Alu 12 146 -3 2 975 207 0 0 0 chr6 51141504 51141527 -98375510 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 975 314 257 76 118 chr6 51141527 51141636 -98375401 - PB1D10 SINE Alu -13 107 1 2 975 214 379 48 24 chr6 51141636 51141703 -98375334 - ID SINE ID -147 77 7 2 975 263 205 141 0 chr6 51141852 51141930 -98375107 - MER53 DNA hAT -9 184 96 2 975 271 333 56 0 chr6 51142252 51142360 -98374677 + MIRb SINE MIR 36 149 -119 2 975 249 261 42 42 chr6 51143085 51143157 -98373880 - MamGypLTR2 LTR Gypsy -897 292 221 2 975 491 254 15 22 chr6 51144293 51144430 -98372607 + ID_B1 SINE B4 80 215 -9 2 975 305 238 12 55 chr6 51144451 51144575 -98372462 + ID4_ SINE ID 4 115 -37 2 975 875 156 0 7 chr6 51144802 51144944 -98372093 + B3 SINE B2 1 141 -75 2 975 459 125 0 0 chr6 51145839 51145911 -98371126 + (TCTG)n Simple_repeat Simple_repeat 3 74 0 2 975 358 287 98 8 chr6 51148340 51148463 -98368574 + L1MC4 LINE L1 7766 7899 -143 2 975 486 0 0 0 chr6 51148468 51148522 -98368515 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 975 387 0 0 0 chr6 51148522 51148564 -98368473 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 975 243 316 0 0 chr6 51148733 51148790 -98368247 - ID4 SINE ID -11 72 16 2 975 433 231 0 11 chr6 51148807 51148899 -98368138 - PB1D10 SINE Alu -3 114 24 2 975 1970 283 71 39 chr6 51149082 51149854 -98367183 + Lx8 LINE L1 5973 6773 -700 2 975 407 315 197 16 chr6 51149885 51150261 -98366776 + Lx8 LINE L1 6968 7411 -62 2 975 243 297 0 0 chr6 51150649 51150713 -98366324 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 975 576 42 0 0 chr6 51151702 51151773 -98365264 + (TCCC)n Simple_repeat Simple_repeat 3 73 0 2 975 511 196 58 38 chr6 51151781 51151930 -98365107 - B3 SINE B2 0 195 40 2 975 570 114 0 0 chr6 51151930 51152018 -98365019 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 975 597 168 153 0 chr6 51152025 51152151 -98364886 - B2_Mm2 SINE B2 -42 156 2 2 975 367 235 75 47 chr6 51152740 51152847 -98364190 - PB1D10 SINE Alu 0 117 8 2 975 722 261 13 6 chr6 51152774 51152932 -98364105 - ID_B1 SINE B4 -64 160 2 2 975 464 239 18 0 chr6 51153377 51153490 -98363547 + MER94 DNA AcHobo 20 134 0 2 975 632 173 13 13 chr6 51153577 51153729 -98363308 + GA-rich Low_complexity Low_complexity 3 154 0 2 975 519 235 251 6 chr6 51154252 51154423 -98362614 - B3 SINE B2 0 216 4 2 975 287 254 48 16 chr6 51154843 51154967 -98362070 - L1MB2 LINE L1 -7 6164 6037 2 975 199 197 99 70 chr6 51154999 51155070 -98361967 - MIRb SINE MIR -66 202 130 2 975 488 250 21 35 chr6 51155238 51155379 -98361658 + B4A SINE B4 25 163 -129 2 975 236 287 21 94 chr6 51156374 51156470 -98360567 - MLT1A1 LTR MaLR -16 392 304 2 975 405 0 0 0 chr6 51156539 51156584 -98360453 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 975 710 192 97 153 chr6 51156814 51157042 -98359995 - B3 SINE B2 0 216 2 2 975 307 253 55 88 chr6 51157077 51157168 -98359869 - B1F2 SINE Alu -61 88 1 2 975 234 276 0 17 chr6 51157116 51157175 -98359862 - B4A SINE B4 -155 137 80 2 975 207 245 0 0 chr6 51158033 51158082 -98358955 + G-rich Low_complexity Low_complexity 1 49 0 2 975 1016 146 6 0 chr6 51158878 51159056 -98357981 + GA-rich Low_complexity Low_complexity 2 180 0 2 975 204 146 24 0 chr6 51159264 51159305 -98357732 + A-rich Low_complexity Low_complexity 4 45 0 2 975 185 0 40 0 chr6 51159460 51159485 -98357552 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 975 432 0 0 0 chr6 51159493 51159541 -98357496 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 975 252 0 0 0 chr6 51159541 51159569 -98357468 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2 975 21 36 0 0 chr6 51159788 51159816 -98357221 + AT_rich Low_complexity Low_complexity 1 28 0 2 975 265 323 102 81 chr6 51160599 51160835 -98356202 + MLT1J2 LTR MaLR 208 448 0 2 975 279 0 0 0 chr6 51161549 51161580 -98355457 + (T)n Simple_repeat Simple_repeat 1 31 0 2 975 440 224 41 42 chr6 51164265 51164451 -98352586 + ORR1A3 LTR MaLR 1 210 -160 2 975 2068 161 93 0 chr6 51164530 51164908 -98352129 - MTC LTR MaLR -8 413 1 2 975 342 0 0 0 chr6 51165252 51165290 -98351747 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 975 922 162 0 0 chr6 51165290 51165426 -98351611 - B1_Mur4 SINE Alu -11 139 4 2 975 21 0 0 0 chr6 51166376 51166397 -98350640 + AT_rich Low_complexity Low_complexity 1 21 0 2 975 315 0 0 0 chr6 51166986 51167021 -98350016 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 975 745 76 38 0 chr6 51167132 51167263 -98349774 + (TCCC)n Simple_repeat Simple_repeat 2 137 0 2 975 916 79 110 0 chr6 51167326 51167453 -98349584 + B1_Mus1 SINE Alu 1 141 -7 2 975 836 189 0 16 chr6 51167457 51167640 -98349397 + GA-rich Low_complexity Low_complexity 1 180 0 2 975 335 269 151 81 chr6 51168484 51168844 -98348193 - MLT1A0 LTR MaLR -3 362 1 2 975 25 0 0 0 chr6 51169467 51169492 -98347545 + AT_rich Low_complexity Low_complexity 1 25 0 2 975 738 178 175 16 chr6 51170199 51170382 -98346655 - B3 SINE B2 -4 212 1 2 975 926 161 0 51 chr6 51170425 51170582 -98346455 - B1_Mur2 SINE Alu 0 149 1 2 975 821 234 27 86 chr6 51170597 51170817 -98346220 - B3 SINE B2 -9 207 1 2 975 817 81 8 8 chr6 51171076 51171179 -98345858 + (TTC)n Simple_repeat Simple_repeat 3 106 0 2 975 1485 34 0 0 chr6 51171179 51171358 -98345679 + (TCTCCC)n Simple_repeat Simple_repeat 2 180 0 2 975 817 81 8 8 chr6 51171358 51171378 -98345659 + (TTC)n Simple_repeat Simple_repeat 1 20 0 2 975 361 298 127 49 chr6 51171524 51171831 -98345206 - L2a LINE L2 -1 3425 3095 2 975 270 335 101 64 chr6 51172057 51172433 -98344604 - L2a LINE L2 -505 2914 2525 2 975 3770 209 57 41 chr6 51172782 51173594 -98343443 - Lx5 LINE L1 0 7050 6226 2 975 276 30 0 0 chr6 51174026 51174059 -98342978 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 2 975 459 0 0 0 chr6 51174785 51174836 -98342201 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 975 414 0 0 0 chr6 51174836 51174881 -98342156 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 975 436 278 25 111 chr6 51175813 51176048 -98340989 + MER20 DNA MER1_type 5 219 0 2 975 368 252 126 34 chr6 51177154 51177273 -98339764 + L1M5 LINE L1 2745 2874 -3272 2 975 394 109 0 80 chr6 51177373 51177394 -98339643 + polypyrimidine Low_complexity Low_complexity 73 93 0 2 975 3422 10 29 0 chr6 51177394 51177777 -98339260 - MTA_Mm LTR MaLR -2 394 1 2 975 394 109 0 80 chr6 51177777 51177855 -98339182 + polypyrimidine Low_complexity Low_complexity 3 72 0 2 975 657 125 19 0 chr6 51177880 51177984 -98339053 - B1_Mus1 SINE Alu -12 136 31 2 975 506 252 95 5 chr6 51178036 51178243 -98338794 - L1_Mur3 LINE L1 -684 5616 5359 2 975 303 183 83 24 chr6 51178841 51178925 -98338112 + L1_Rod LINE L1 5553 5641 -206 2 975 40404 27 2 7 chr6 51178934 51185141 -98331896 - L1Md_T LINE L1 0 6582 413 2 975 280 294 6 0 chr6 51185140 51185226 -98331811 + Lx7 LINE L1 5634 5743 -1953 2 975 339 196 40 11 chr6 51185226 51185401 -98331636 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 975 22 0 0 0 chr6 51185694 51185716 -98331321 + AT_rich Low_complexity Low_complexity 1 22 0 2 975 501 115 0 0 chr6 51185787 51185865 -98331172 + (TCCC)n Simple_repeat Simple_repeat 4 81 0 2 975 1771 213 90 13 chr6 51186656 51187032 -98330005 - MTD LTR MaLR -14 405 1 2 975 1635 187 118 18 chr6 51187186 51187568 -98329469 + MTC LTR MaLR 2 421 0 2 975 277 283 87 69 chr6 51187623 51187905 -98329132 - MTEa LTR MaLR 0 379 74 2 975 227 238 0 0 chr6 51188598 51188640 -98328397 + polypyrimidine Low_complexity Low_complexity 4 45 0 2 975 645 14 0 0 chr6 51188646 51188720 -98328317 + (TTTC)n Simple_repeat Simple_repeat 1 74 0 2 975 569 190 0 6 chr6 51189449 51189629 -98327408 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 975 390 91 0 0 chr6 51189660 51189715 -98327322 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 975 227 353 19 10 chr6 51190951 51191054 -98325983 - MER5A DNA MER1_type -63 126 23 2 975 2496 176 5 213 chr6 51191127 51191898 -98325139 + RMER19C LTR ERVK 1 611 0 2 975 1506 292 83 81 chr6 51191979 51193330 -98323707 + L1M3 LINE L1 3114 4466 -1674 2 975 516 264 183 20 chr6 51193333 51193584 -98323453 + B4A SINE B4 1 292 0 2 975 232 247 21 82 chr6 51193648 51193745 -98323292 + L1M3 LINE L1 4483 4573 -1567 2 975 237 325 25 0 chr6 51193793 51193873 -98323164 - RMER15 LTR ERVL -70 505 424 2 975 722 232 29 19 chr6 51194130 51194301 -98322736 + MTE2b LTR MaLR 231 407 0 2 975 413 283 130 13 chr6 51194328 51194482 -98322555 + MLT1A LTR MaLR 201 372 -2 2 975 1051 70 84 0 chr6 51194492 51194635 -98322402 + B2_Mm2 SINE B2 3 157 -38 2 975 315 0 0 0 chr6 51194635 51194670 -98322367 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 2 975 1150 67 13 0 chr6 51194696 51194846 -98322191 + B2_Mm2 SINE B2 3 154 -41 3 975 709 233 55 0 chr6 51194900 51195059 -98321978 + ORR1C2 LTR MaLR 221 394 0 3 975 215 239 0 0 chr6 51195111 51195157 -98321880 + (TATG)n Simple_repeat Simple_repeat 1 46 0 3 975 387 0 0 0 chr6 51195171 51195214 -98321823 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 975 566 310 110 62 chr6 51195228 51195368 -98321669 - B4 SINE B4 -7 285 154 3 975 3990 170 103 73 chr6 51195368 51196244 -98320793 - RMER19B LTR ERVK 0 902 1 3 975 566 310 110 62 chr6 51196244 51196375 -98320662 - B4 SINE B4 -139 153 1 3 975 273 264 250 26 chr6 51196830 51196982 -98320055 + MIRc SINE MIR 26 211 -57 3 975 566 28 14 0 chr6 51197289 51197361 -98319676 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 3 975 312 27 0 0 chr6 51197362 51197399 -98319638 + (TATG)n Simple_repeat Simple_repeat 2 38 0 3 975 307 316 0 0 chr6 51197410 51197486 -98319551 - RSINE1 SINE B4 -2 163 88 3 975 1151 224 135 72 chr6 51197531 51197878 -98319159 - ORR1D2 LTR MaLR 0 370 2 3 975 1170 218 162 3 chr6 51198374 51198664 -98318373 - MTD LTR MaLR 0 419 84 3 975 1118 172 101 198 chr6 51198668 51198940 -98318097 - Lx7 LINE L1 0 7696 7408 3 975 948 120 56 0 chr6 51198940 51199082 -98317955 + B1_Mur4 SINE Alu 1 150 0 3 975 1118 172 101 198 chr6 51199082 51199303 -98317734 - Lx7 LINE L1 -289 7407 7251 3 975 1832 213 76 14 chr6 51199302 51199798 -98317239 - Lx7 LINE L1 -1268 6428 5873 3 975 2690 113 21 51 chr6 51199802 51200232 -98316805 - MTC LTR MaLR 0 421 5 3 975 397 211 62 21 chr6 51200237 51200334 -98316703 - MTD LTR MaLR -320 101 1 3 975 4331 184 62 35 chr6 51200510 51201465 -98315572 + MYSERV6-int LTR ERVK 7979 8959 0 3 975 426 199 106 62 chr6 51201465 51201626 -98315411 + RLTR15 LTR ERVK 1 168 -191 3 975 466 256 62 69 chr6 51201637 51201897 -98315140 + RLTR15 LTR ERVK 102 359 0 3 975 276 393 0 0 chr6 51202689 51202778 -98314259 + L2c LINE L2 3243 3331 -56 3 975 229 309 15 0 chr6 51203636 51203704 -98313333 + GA-rich Low_complexity Low_complexity 4 72 0 3 975 383 360 93 0 chr6 51204318 51204490 -98312547 + MIR SINE MIR 61 248 -14 3 975 343 246 29 0 chr6 51204545 51204614 -98312423 + tRNA-Asp-GAY tRNA tRNA 1 71 -4 3 975 2292 181 12 22 chr6 51204649 51205066 -98311971 + MTC LTR MaLR 1 413 -8 3 975 229 143 48 0 chr6 51205119 51205161 -98311876 + B1_Mur1 SINE Alu 97 140 -9 3 975 723 186 3 0 chr6 51205161 51205502 -98311535 + (TG)n Simple_repeat Simple_repeat 1 342 0 3 975 192 167 0 0 chr6 51205525 51205573 -98311464 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 975 344 118 20 0 chr6 51205573 51205624 -98311413 - HAL1-3A_ME LINE L1 -831 2027 1976 3 975 309 331 110 0 chr6 51205642 51205787 -98311250 + MIR SINE MIR 45 205 -57 3 975 386 308 20 32 chr6 51205796 51206003 -98311034 - L1M3 LINE L1 -534 5766 5566 3 975 597 299 101 27 chr6 51206099 51206357 -98310680 - Charlie2b DNA MER1_type -7 2775 2499 3 975 266 237 0 17 chr6 51206452 51206512 -98310525 + L2c LINE L2 3354 3412 -14 3 975 263 134 30 0 chr6 51207204 51207271 -98309766 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 3 975 249 33 0 0 chr6 51207271 51207301 -98309736 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 975 270 0 0 0 chr6 51207372 51207402 -98309635 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 975 207 0 0 0 chr6 51207443 51207466 -98309571 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 975 291 226 22 22 chr6 51207887 51208023 -98309014 + GA-rich Low_complexity Low_complexity 4 139 0 3 975 433 304 0 62 chr6 51209000 51209144 -98307893 - MLT1A1 LTR MaLR 0 408 274 3 975 209 319 40 48 chr6 51209497 51209622 -98307415 - MIRb SINE MIR -75 193 70 3 975 315 179 0 15 chr6 51209641 51209709 -98307328 + MER3 DNA MER1_type 127 193 -16 3 975 774 180 0 0 chr6 51209944 51210191 -98306846 + (TG)n Simple_repeat Simple_repeat 1 247 0 3 975 593 195 4 0 chr6 51210240 51210476 -98306561 + (TG)n Simple_repeat Simple_repeat 1 237 0 3 975 583 248 9 23 chr6 51210477 51210643 -98306394 - B3A SINE B2 -15 201 39 3 975 1334 126 26 18 chr6 51210679 51210905 -98306132 - Lx4B LINE L1 -4 7054 6827 3 975 1502 166 122 65 chr6 51210992 51211346 -98305691 - ORR1D1 LTR MaLR 0 374 1 3 975 297 0 0 0 chr6 51211927 51211960 -98305077 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 975 526 215 7 7 chr6 51212089 51212225 -98304812 + CT-rich Low_complexity Low_complexity 3 138 0 3 975 241 342 13 0 chr6 51212544 51212620 -98304417 + Charlie17a DNA MER1_type 3 79 -140 3 975 1051 211 25 0 chr6 51213166 51213370 -98303667 + B3 SINE B2 1 209 -7 3 975 333 155 0 0 chr6 51213443 51213501 -98303536 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 3 975 683 179 49 21 chr6 51213502 51213645 -98303392 - B1_Mur4 SINE Alu -3 147 1 3 975 1231 136 85 24 chr6 51214049 51214260 -98302777 + URR1B DNA MER1_type 1 224 -1 3 975 1585 37 16 0 chr6 51214481 51214668 -98302369 - B2_Mm2 SINE B2 -4 191 2 3 975 540 0 0 0 chr6 51214863 51214923 -98302114 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 975 271 345 106 17 chr6 51215031 51215267 -98301770 + L2c LINE L2 2911 3167 -220 3 975 1096 161 102 0 chr6 51215665 51215870 -98301167 - URR1A DNA MER1_type 0 226 1 3 975 500 210 409 26 chr6 51216004 51216231 -98300806 + MTD LTR MaLR 6 350 -69 3 975 258 56 0 0 chr6 51216231 51216267 -98300770 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 975 421 187 384 7 chr6 51216267 51216327 -98300710 + MTD LTR MaLR 351 411 -8 3 975 221 307 23 3 chr6 51216426 51216515 -98300522 + MIR SINE MIR 58 149 -119 3 975 637 279 66 22 chr6 51217088 51217130 -98299907 + B3A SINE B2 1 42 -156 3 975 2056 152 52 3 chr6 51217130 51217460 -98299577 + ORR1A1 LTR MaLR 1 346 0 3 975 637 279 66 22 chr6 51217460 51217600 -98299437 + B3A SINE B2 43 190 -8 3 975 195 129 0 0 chr6 51219326 51219357 -98297680 + (A)n Simple_repeat Simple_repeat 1 31 0 3 975 357 288 46 46 chr6 51223942 51224073 -98292964 - MLT1D LTR MaLR -264 241 111 3 975 329 169 77 0 chr6 51224558 51224623 -98292414 + PB1D9 SINE Alu 51 120 0 3 975 555 90 0 0 chr6 51224623 51224701 -98292336 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 975 255 170 0 0 chr6 51224704 51224751 -98292286 + GA-rich Low_complexity Low_complexity 2 48 0 3 975 868 137 7 40 chr6 51225109 51225261 -98291776 + B1_Mur4 SINE Alu 2 148 -2 3 975 455 252 10 0 chr6 51225751 51225850 -98291187 + PB1D10 SINE Alu 18 117 0 3 975 320 333 92 37 chr6 51225961 51226232 -98290805 + L1ME3B LINE L1 5786 6071 -169 3 975 1865 170 94 13 chr6 51226830 51227212 -98289825 - MTC LTR MaLR -8 413 1 3 975 1396 238 44 9 chr6 51227663 51228002 -98289035 + MTD LTR MaLR 1 351 -68 3 975 24 0 0 0 chr6 51228337 51228361 -98288676 + AT_rich Low_complexity Low_complexity 1 24 0 3 975 1148 50 14 0 chr6 51228361 51228500 -98288537 - B1_Mm SINE Alu -6 141 1 3 975 248 221 14 14 chr6 51228976 51229045 -98287992 + MADE2 DNA Mariner 2 70 -10 3 975 833 225 11 28 chr6 51230594 51230757 -98286280 + B3 SINE B2 2 162 -54 3 975 459 0 0 0 chr6 51230757 51230808 -98286229 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 975 833 240 10 78 chr6 51230808 51230856 -98286181 + B3 SINE B2 152 194 -1 3 975 267 86 86 0 chr6 51230890 51230948 -98286089 + (TCTG)n Simple_repeat Simple_repeat 1 63 0 3 975 478 320 20 20 chr6 51231064 51231262 -98285775 - B3A SINE B2 0 198 1 3 975 276 148 0 0 chr6 51232828 51232889 -98284148 + (T)n Simple_repeat Simple_repeat 1 61 0 3 975 362 211 9 47 chr6 51233645 51233766 -98283271 - MIRc SINE MIR -55 153 38 3 975 215 211 0 34 chr6 51233767 51233826 -98283211 + (TTA)n Simple_repeat Simple_repeat 1 57 0 3 975 207 187 53 13 chr6 51236308 51236384 -98280653 + GA-rich Low_complexity Low_complexity 3 81 0 3 975 236 358 84 24 chr6 51236387 51236553 -98280484 + MLT1F2 LTR MaLR 12 187 -373 3 975 309 357 176 4 chr6 51236619 51236897 -98280140 - LTR33A_ LTR ERVL -96 435 110 3 975 254 368 16 0 chr6 51236908 51237033 -98280004 - LTR33A_ LTR ERVL -366 165 39 3 975 943 277 9 109 chr6 51238319 51238740 -98278297 + MTEb LTR MaLR 1 379 0 3 975 504 194 23 0 chr6 51238927 51239056 -98277981 + GA-rich Low_complexity Low_complexity 2 133 0 3 975 659 297 113 49 chr6 51239466 51239898 -98277139 - MLT1C LTR MaLR -5 462 3 3 975 489 263 98 44 chr6 51239922 51240105 -98276932 + B3A SINE B2 1 193 -5 3 975 909 283 32 18 chr6 51240199 51240483 -98276554 + B4 SINE B4 4 291 -1 3 975 3405 207 23 108 chr6 51240834 51241652 -98275385 + RMER1C Other Other 593 1341 -1 3 975 3994 126 8 8 chr6 51241626 51242272 -98274765 + L1_Mur3 LINE L1 1407 2052 -3828 3 975 4159 173 10 30 chr6 51242254 51243098 -98273939 + L1_Mur3 LINE L1 4461 5320 -971 3 975 848 262 88 0 chr6 51243172 51243466 -98273571 + MTEa LTR MaLR 60 379 0 3 975 847 213 91 0 chr6 51244063 51244260 -98272777 + B3 SINE B2 1 215 -1 3 975 189 69 0 0 chr6 51245232 51245253 -98271784 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 975 432 0 0 0 chr6 51245253 51245301 -98271736 + (TGG)n Simple_repeat Simple_repeat 3 50 0 3 975 189 69 0 0 chr6 51245301 51245308 -98271729 + (TG)n Simple_repeat Simple_repeat 1 7 0 3 975 1033 265 56 0 chr6 51245340 51245589 -98271448 - B4A SINE B4 -7 285 23 3 975 24 0 0 0 chr6 51245701 51245725 -98271312 + AT_rich Low_complexity Low_complexity 1 24 0 3 975 712 184 29 0 chr6 51245726 51245862 -98271175 - MTE2a LTR MaLR 0 379 240 3 975 318 216 25 13 chr6 51245886 51246045 -98270992 + (CATG)n Simple_repeat Simple_repeat 4 164 0 3 975 582 296 0 7 chr6 51246053 51246199 -98270838 - MTE2a LTR MaLR -178 201 57 3 975 292 198 0 232 chr6 51246199 51246324 -98270713 - MTE2a LTR MaLR -297 122 2 3 975 240 215 58 58 chr6 51246357 51246409 -98270628 - PB1D7 SINE Alu -36 84 30 3 975 462 18 0 0 chr6 51246409 51246464 -98270573 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 975 240 215 58 58 chr6 51246464 51246480 -98270557 - PB1D7 SINE Alu -91 29 16 3 975 447 197 151 32 chr6 51246508 51246634 -98270403 - B3A SINE B2 -53 145 5 3 975 258 360 53 63 chr6 51246971 51247161 -98269876 + MLT1E2 LTR MaLR 336 523 -104 3 975 293 257 119 121 chr6 51247267 51247680 -98269357 + MLT1B LTR MaLR 1 392 -75 4 975 1512 196 266 25 chr6 51248488 51249044 -98267993 - RMER6C LTR ERVK 0 690 1 4 121 460 307 49 34 chr6 51249090 51249353 -98267684 + MER33 DNA MER1_type 10 276 -48 4 976 207 0 0 0 chr6 51249435 51249458 -98267579 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 976 707 88 0 16 chr6 51249458 51249585 -98267452 + (CAGAGA)n Simple_repeat Simple_repeat 2 126 0 4 976 292 250 28 19 chr6 51249798 51249904 -98267133 + GA-rich Low_complexity Low_complexity 1 107 0 4 976 509 175 114 0 chr6 51249949 51250063 -98266974 + B1F2 SINE Alu 23 149 0 4 976 189 0 0 0 chr6 51250367 51250388 -98266649 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 976 2703 141 5 19 chr6 51250427 51250854 -98266183 - MTC LTR MaLR 0 421 1 4 976 932 286 8 0 chr6 51251726 51251967 -98265070 - B4A SINE B4 -42 250 8 4 976 395 270 83 44 chr6 51252278 51252483 -98264554 - L1MA4 LINE L1 -8 6292 6080 4 976 250 83 0 0 chr6 51252502 51252538 -98264499 - MTB_Mm LTR MaLR -83 324 289 4 976 2685 160 102 98 chr6 51252548 51252794 -98264243 - RMER19B LTR ERVK -233 669 399 4 976 2011 119 21 33 chr6 51252794 51253125 -98263912 + ORR1A2 LTR MaLR 1 327 0 4 976 2685 160 102 98 chr6 51253125 51253544 -98263493 - RMER19B LTR ERVK -504 398 1 4 976 2567 128 52 7 chr6 51254295 51254698 -98262339 + MTC LTR MaLR 1 421 0 4 976 1720 184 163 176 chr6 51255068 51255687 -98261350 + RMER19C LTR ERVK 1 611 0 4 976 308 257 62 35 chr6 51255783 51255896 -98261141 - Lx7 LINE L1 -16 7680 7565 4 976 730 264 30 10 chr6 51255942 51256145 -98260892 - Lx7 LINE L1 -363 7333 7127 4 976 495 0 0 0 chr6 51257005 51257060 -98259977 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 976 328 251 33 145 chr6 51257465 51257679 -98259358 + MER53 DNA hAT 2 191 -2 4 976 665 215 43 19 chr6 51257890 51258051 -98258986 - MTD LTR MaLR -254 165 1 4 976 878 169 137 30 chr6 51258053 51258315 -98258722 - MTD-int LTR MaLR -2 1256 967 4 976 314 266 0 0 chr6 51258563 51258627 -98258410 + Lx8 LINE L1 7175 7238 -235 4 976 236 30 30 0 chr6 51258627 51258660 -98258377 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 4 976 452 291 96 12 chr6 51258698 51258865 -98258172 - B3A SINE B2 -15 183 3 4 976 773 239 86 9 chr6 51258889 51259109 -98257928 + Lx8 LINE L1 7230 7466 -7 4 976 28 29 0 0 chr6 51259199 51259234 -98257803 + AT_rich Low_complexity Low_complexity 1 35 0 4 976 271 199 0 239 chr6 51259357 51259433 -98257604 + L1M4 LINE L1 3775 3839 -2307 4 976 692 272 12 6 chr6 51259433 51259596 -98257441 + RSINE1 SINE B4 2 165 0 4 976 298 194 0 136 chr6 51259596 51259757 -98257280 + L1M4 LINE L1 3840 3955 -2191 4 976 183 156 0 0 chr6 51259837 51259869 -98257168 + A-rich Low_complexity Low_complexity 5 36 0 4 976 474 320 63 50 chr6 51259989 51260291 -98256746 + L1M4 LINE L1 3953 4258 -1888 4 976 233 361 0 0 chr6 51260307 51260379 -98256658 + ID4_ SINE ID 1 72 -11 4 976 249 33 0 0 chr6 51260394 51260424 -98256613 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 976 238 227 162 9 chr6 51260424 51260535 -98256502 - L1M5 LINE L1 -1756 4390 4263 4 976 873 29 0 0 chr6 51260535 51260639 -98256398 + (GA)n Simple_repeat Simple_repeat 2 105 0 4 976 232 291 27 80 chr6 51260675 51260787 -98256250 + L1M1 LINE L1 5776 5881 -419 4 976 3362 192 161 12 chr6 51261009 51261836 -98255201 + Lx7 LINE L1 6739 7688 -8 4 976 180 0 0 0 chr6 51262079 51262099 -98254938 + (A)n Simple_repeat Simple_repeat 1 20 0 4 976 353 288 27 9 chr6 51262139 51262251 -98254786 - Lx7 LINE L1 -377 7319 7206 4 976 321 26 0 0 chr6 51262307 51262345 -98254692 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 4 976 3437 185 28 54 chr6 51262368 51263036 -98254001 - Lx6 LINE L1 -186 7274 6624 4 976 1129 230 64 54 chr6 51263119 51263510 -98253527 - RCHARR1 DNA MER1_type -48 926 532 4 976 1031 282 42 16 chr6 51263508 51263818 -98253219 - RCHARR1 DNA MER1_type -652 322 5 4 976 232 292 30 40 chr6 51264312 51264412 -98252625 - L1MA10 LINE L1 -20 6314 6216 4 976 1916 257 118 26 chr6 51264704 51265474 -98251563 + RCHARR1 DNA MER1_type 3 843 -131 4 976 202 333 21 41 chr6 51265484 51265581 -98251456 + (CATG)n Simple_repeat Simple_repeat 1 95 0 4 976 216 261 0 0 chr6 51265485 51265531 -98251506 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 976 484 304 30 89 chr6 51265630 51265832 -98251205 - B4 SINE B4 -101 191 2 4 976 434 267 17 0 chr6 51265840 51265956 -98251081 + RCHARR1 DNA MER1_type 857 974 0 4 976 1221 41 7 0 chr6 51266011 51266158 -98250879 + B1_Mus1 SINE Alu 1 148 0 4 976 907 260 144 19 chr6 51266175 51266246 -98250791 - L1M4 LINE L1 -772 5672 5601 4 976 1132 244 53 94 chr6 51266246 51266588 -98250449 + MTE2a LTR MaLR 3 344 -35 4 976 1116 77 7 0 chr6 51266588 51266731 -98250306 - B1_Mus2 SINE Alu 0 147 4 4 976 1132 244 53 94 chr6 51266731 51266781 -98250256 + MTE2a LTR MaLR 345 379 0 4 976 907 223 128 20 chr6 51266781 51267125 -98249912 - L1M4 LINE L1 -844 5600 5212 4 976 517 272 111 48 chr6 51267126 51267506 -98249531 + MLT2D LTR ERVL 28 447 -17 4 976 364 323 105 23 chr6 51267527 51267773 -98249264 + MER110A LTR ERV1 165 458 -10 4 976 1256 145 33 57 chr6 51268647 51268946 -98248091 - Lx7 LINE L1 0 7696 7405 4 976 229 309 0 0 chr6 51268950 51269047 -98247990 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 976 695 148 39 66 chr6 51269047 51269227 -98247810 - Lx7 LINE L1 -243 7453 7107 4 976 298 265 233 8 chr6 51269640 51269773 -98247264 + RSINE1 SINE B4 3 165 0 4 976 743 249 157 0 chr6 51269829 51270014 -98247023 - B3 SINE B2 0 216 3 4 976 1101 214 25 54 chr6 51270100 51270377 -98246660 + B4A SINE B4 2 270 -22 4 976 189 0 0 0 chr6 51270377 51270398 -98246639 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 976 194 0 39 0 chr6 51270418 51270444 -98246593 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 976 231 114 0 0 chr6 51270444 51270479 -98246558 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 4 976 344 300 36 9 chr6 51271499 51271610 -98245427 + Tigger5 DNA MER2_type 1 114 -2292 4 976 317 304 10 0 chr6 51271650 51271752 -98245285 + Tigger5 DNA MER2_type 2304 2406 0 4 976 206 320 26 0 chr6 51271771 51271849 -98245188 - MIRb SINE MIR -63 205 126 4 976 1230 268 174 34 chr6 51272073 51272695 -98244342 + L1MB3 LINE L1 5423 6131 -52 4 976 1927 249 107 99 chr6 51272763 51274986 -98242051 + L1MA6 LINE L1 3763 5994 -297 4 976 400 273 59 126 chr6 51275080 51275319 -98241718 + Lx9 LINE L1 7216 7438 -206 4 976 302 222 0 0 chr6 51275398 51275461 -98241576 + L1MA6 LINE L1 6202 6264 -36 4 976 970 218 18 45 chr6 51275489 51275710 -98241327 - B3 SINE B2 0 216 2 4 976 186 43 0 0 chr6 51275786 51275809 -98241228 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 976 855 182 5 54 chr6 51275957 51276160 -98240877 + Lx4B LINE L1 6866 7058 0 4 976 24 0 0 0 chr6 51276161 51276185 -98240852 + AT_rich Low_complexity Low_complexity 1 24 0 4 976 184 237 16 78 chr6 51276875 51276939 -98240098 + MER5A DNA MER1_type 130 189 0 4 976 398 194 30 61 chr6 51276976 51277075 -98239962 + PB1D10 SINE Alu 1 96 -21 4 976 596 158 9 0 chr6 51277075 51277189 -98239848 + GA-rich Low_complexity Low_complexity 3 117 0 4 976 804 63 0 0 chr6 51277189 51277300 -98239737 + (GGAA)n Simple_repeat Simple_repeat 4 114 0 4 976 779 236 19 0 chr6 51277319 51277476 -98239561 + B3 SINE B2 5 164 -52 4 976 479 70 28 0 chr6 51277481 51277552 -98239485 + (CATA)n Simple_repeat Simple_repeat 4 76 0 4 976 616 283 60 16 chr6 51278949 51279230 -98237807 + Lx8 LINE L1 7152 7467 -6 4 976 266 311 77 73 chr6 51278985 51279259 -98237778 + RMER1C Other Other 1068 1342 0 4 976 394 299 40 13 chr6 51279698 51279847 -98237190 - MER20 DNA MER1_type -57 162 10 4 976 303 191 143 0 chr6 51280720 51280783 -98236254 + ID2 SINE ID 12 83 0 4 976 603 256 0 52 chr6 51283513 51283686 -98233351 + RSINE1 SINE B4 2 165 0 4 976 365 58 19 0 chr6 51284513 51284565 -98232472 + (CTTG)n Simple_repeat Simple_repeat 3 55 0 4 976 456 19 0 0 chr6 51284710 51284763 -98232274 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 976 995 256 28 8 chr6 51284764 51285012 -98232025 - B4A SINE B4 -39 253 1 4 976 199 289 74 102 chr6 51285364 51285472 -98231565 + MIRb SINE MIR 131 235 -33 4 976 360 0 0 0 chr6 51286895 51286935 -98230102 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 976 444 196 20 61 chr6 51286937 51287035 -98230002 - B3A SINE B2 -104 94 1 4 976 674 268 169 8 chr6 51287081 51287329 -98229708 + B4A SINE B4 5 292 0 4 976 252 0 0 0 chr6 51287345 51287373 -98229664 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 976 771 305 103 8 chr6 51287427 51287794 -98229243 + MLT1A1 LTR MaLR 5 406 -2 4 976 656 322 93 20 chr6 51287799 51288100 -98228937 + MER21B LTR ERV1 126 448 -415 4 976 219 330 55 0 chr6 51288259 51288368 -98228669 + PB1D10 SINE Alu 3 117 0 4 976 198 0 0 0 chr6 51289690 51289712 -98227325 + (A)n Simple_repeat Simple_repeat 1 22 0 4 976 301 295 60 71 chr6 51290170 51290338 -98226699 + MLT1C LTR MaLR 299 464 -3 4 976 2380 110 3 0 chr6 51290620 51290948 -98226089 + ORR1A4 LTR MaLR 1 329 0 4 976 396 0 0 0 chr6 51291082 51291126 -98225911 + (GAAAA)n Simple_repeat Simple_repeat 3 46 0 4 976 783 213 5 130 chr6 51291126 51291342 -98225695 + B3A SINE B2 2 190 -8 4 976 923 108 162 6 chr6 51291445 51291578 -98225459 + B2_Mm2 SINE B2 1 159 -36 4 976 270 0 0 0 chr6 51291578 51291608 -98225429 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 976 923 108 162 6 chr6 51291608 51291641 -98225396 + B2_Mm2 SINE B2 160 192 -3 4 976 190 200 24 24 chr6 51291929 51291970 -98225067 - L4 LINE RTE -887 1142 1102 4 976 675 234 40 40 chr6 51292302 51292525 -98224512 + ID_B1 SINE B4 2 224 0 4 976 483 174 23 0 chr6 51293022 51293108 -98223929 - PB1D10 SINE Alu -9 108 21 4 976 404 286 59 119 chr6 51294442 51294644 -98222393 - MER20 DNA MER1_type -6 213 24 4 976 363 216 131 20 chr6 51295760 51295859 -98221178 + MLT1C LTR MaLR 22 131 -336 4 976 27 49 0 0 chr6 51296094 51296135 -98220902 + AT_rich Low_complexity Low_complexity 1 41 0 5 976 377 288 45 0 chr6 51296350 51296461 -98220576 + L2b LINE L2 2969 3084 -291 5 976 277 299 41 10 chr6 51296845 51296943 -98220094 + CR1_Mam LINE CR1 60 160 -2044 5 976 2555 144 5 26 chr6 51297090 51297510 -98219527 + MTC LTR MaLR 3 413 -8 5 976 3197 127 55 65 chr6 51298647 51298780 -98218257 + RMER15 LTR ERVL 1 138 -437 5 976 267 103 0 0 chr6 51298780 51298819 -98218218 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 976 3197 127 55 65 chr6 51298819 51299266 -98217771 + RMER15 LTR ERVL 139 575 0 5 976 296 330 11 0 chr6 51299360 51299451 -98217586 - MIRb SINE MIR -82 186 95 5 976 198 167 0 0 chr6 51299505 51299541 -98217496 + (TTAA)n Simple_repeat Simple_repeat 4 39 0 5 976 896 152 0 0 chr6 51299541 51299679 -98217358 - B1_Mus1 SINE Alu -5 143 6 5 976 326 357 63 20 chr6 51299719 51300022 -98217015 + L1MC4a LINE L1 5574 5889 -1993 5 976 302 282 13 0 chr6 51300037 51300115 -98216922 + RSINE1 SINE B4 3 81 -84 5 976 251 287 117 0 chr6 51300153 51300247 -98216790 + RSINE1 SINE B4 42 146 -19 5 976 444 37 0 0 chr6 51300258 51300312 -98216725 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 976 21 0 0 0 chr6 51300312 51300333 -98216704 + AT_rich Low_complexity Low_complexity 1 21 0 5 976 252 103 34 17 chr6 51301583 51301642 -98215395 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 976 556 202 128 0 chr6 51301703 51301812 -98215225 + RSINE1 SINE B4 3 125 -40 5 976 609 72 0 0 chr6 51301817 51301900 -98215137 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 976 485 232 21 0 chr6 51302014 51302109 -98214928 + RSINE1 SINE B4 67 163 -2 5 976 744 245 31 84 chr6 51302317 51302544 -98214493 - MTEb LTR MaLR -164 215 1 5 976 265 310 40 0 chr6 51302544 51302644 -98214393 - MTEb-int LTR MaLR 0 1580 1477 5 976 234 191 0 0 chr6 51302745 51302792 -98214245 + (CATA)n Simple_repeat Simple_repeat 2 48 0 5 976 1770 263 102 14 chr6 51302810 51303300 -98213737 - MTEb-int LTR MaLR -193 1387 855 5 976 188 303 61 0 chr6 51303373 51303439 -98213598 - L2b LINE L2 -19 3356 3287 5 976 386 258 62 0 chr6 51303985 51304082 -98212955 + B4 SINE B4 186 288 -4 5 976 23 68 0 0 chr6 51304104 51304148 -98212889 + AT_rich Low_complexity Low_complexity 1 44 0 5 976 1724 241 125 12 chr6 51304181 51304660 -98212377 + MT2A LTR ERVL 1 533 0 5 976 216 0 0 0 chr6 51304675 51304699 -98212338 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 976 357 307 118 40 chr6 51304756 51305023 -98212014 + MER58B DNA MER1_type 50 339 -2 5 976 260 330 100 45 chr6 51305451 51305651 -98211386 - L1M5 LINE L1 -672 5568 5358 5 976 330 98 0 0 chr6 51305723 51305774 -98211263 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 976 461 211 72 2 chr6 51305816 51305929 -98211108 - B4A SINE B4 -46 246 127 5 976 4665 92 2 0 chr6 51305930 51306549 -98210488 - Lx LINE L1 -360 6294 5675 5 976 334 304 58 23 chr6 51306669 51306841 -98210196 - RMER15 LTR ERVL -42 533 356 5 976 2401 202 45 58 chr6 51306876 51307543 -98209494 + RMER19B LTR ERVK 1 902 0 5 976 378 309 101 75 chr6 51307982 51308290 -98208747 - MLT1E1 LTR MaLR 0 654 339 5 976 402 21 0 0 chr6 51310597 51310644 -98206393 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 976 205 362 0 12 chr6 51310768 51310849 -98206188 + L2a LINE L2 3344 3423 -3 5 976 749 237 169 0 chr6 51310889 51311138 -98205899 - B4A SINE B4 0 292 2 5 976 244 319 69 93 chr6 51312810 51313014 -98204023 - L2a LINE L2 -22 3404 3206 5 976 640 276 30 35 chr6 51313407 51313606 -98203431 + B3A SINE B2 1 198 0 5 976 771 254 11 43 chr6 51313633 51313818 -98203219 - B3 SINE B2 -11 205 27 5 976 218 295 0 32 chr6 51314007 51314070 -98202967 + ID4_ SINE ID 19 79 -4 5 976 262 156 0 22 chr6 51314260 51314306 -98202731 + LTR16A LTR ERVL 1 45 -406 5 976 468 304 135 45 chr6 51314350 51314639 -98202398 + LTR16A LTR ERVL 127 441 -10 5 976 432 0 0 0 chr6 51315638 51315686 -98201351 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 976 563 271 8 37 chr6 51315688 51315822 -98201215 - RSINE1 SINE B4 -30 135 6 5 976 499 245 0 0 chr6 51316386 51316480 -98200557 + B3A SINE B2 3 96 -102 5 976 508 239 46 0 chr6 51316478 51316587 -98200450 - B1F SINE Alu -35 114 1 5 976 299 243 0 54 chr6 51316522 51316596 -98200441 - B4A SINE B4 -142 150 81 5 976 433 257 28 37 chr6 51316600 51316709 -98200328 - PB1D10 SINE Alu -8 109 2 5 976 2587 159 13 20 chr6 51317142 51317281 -98199756 - RLTR11B LTR ERVK 0 453 319 5 976 2315 58 48 60 chr6 51317281 51317612 -98199425 + ORR1A2 LTR MaLR 1 327 0 5 976 2587 159 13 20 chr6 51317612 51317928 -98199109 - RLTR11B LTR ERVK -135 318 1 5 976 469 250 71 9 chr6 51317932 51318045 -98198992 - B3 SINE B2 -95 121 2 5 976 21 0 0 0 chr6 51318048 51318069 -98198968 + AT_rich Low_complexity Low_complexity 1 21 0 5 976 311 229 36 12 chr6 51318094 51318178 -98198859 + L2a LINE L2 3331 3416 -10 5 976 545 263 86 0 chr6 51318729 51318881 -98198156 - ORR1D2 LTR MaLR 0 370 206 5 976 456 62 0 0 chr6 51318971 51319035 -98198002 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 5 976 285 327 66 53 chr6 51319210 51319261 -98197776 + RMER17C LTR ERVK 133 182 -228 5 976 764 36 18 18 chr6 51319261 51319375 -98197662 + (TC)n Simple_repeat Simple_repeat 2 115 0 5 976 285 327 66 53 chr6 51319375 51319549 -98197488 + RMER17C LTR ERVK 183 361 -49 5 976 434 212 27 43 chr6 51319535 51319665 -98197372 - ORR1D2 LTR MaLR -244 130 1 5 976 188 303 71 10 chr6 51319910 51320006 -98197031 + MIR SINE MIR 162 268 0 5 976 275 314 114 109 chr6 51320252 51320303 -98196734 + B4 SINE B4 34 225 -65 5 976 607 279 57 0 chr6 51320303 51320443 -98196594 + B1_Mur1 SINE Alu 2 149 0 5 976 189 0 0 0 chr6 51320459 51320480 -98196557 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 976 561 272 39 44 chr6 51320521 51320702 -98196335 + B3A SINE B2 2 181 -17 5 976 295 247 45 72 chr6 51320847 51320991 -98196046 + PB1D10 SINE Alu 6 138 -12 5 976 519 299 25 19 chr6 51322568 51322728 -98194309 + MER20 DNA MER1_type 58 218 -1 5 976 333 0 0 0 chr6 51323983 51324020 -98193017 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 976 405 0 0 0 chr6 51324020 51324064 -98192973 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 976 297 0 0 0 chr6 51324073 51324106 -98192931 + (TTG)n Simple_repeat Simple_repeat 2 34 0 5 976 246 132 0 0 chr6 51324589 51324642 -98192395 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 976 406 248 35 0 chr6 51324784 51324887 -98192150 - B1F2 SINE Alu -6 114 3 5 976 296 246 0 47 chr6 51324830 51324894 -98192143 - ID_B1 SINE B4 -84 140 80 5 976 181 235 0 0 chr6 51324965 51324999 -98192038 - L2 LINE L2 -1606 1813 1780 5 976 1295 64 23 0 chr6 51325881 51326053 -98190984 - B2_Mm2 SINE B2 -2 193 18 5 976 477 263 17 0 chr6 51326464 51326582 -98190455 - PB1D7 SINE Alu 0 120 1 5 976 914 191 28 22 chr6 51326663 51326845 -98190192 - B3 SINE B2 -27 189 7 5 976 267 60 60 0 chr6 51327052 51327102 -98189935 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 976 247 226 18 72 chr6 51327122 51327178 -98189859 + ORR1B1-int LTR MaLR 597 643 -866 5 976 656 161 9 26 chr6 51327178 51327293 -98189744 + B1_Mur4 SINE Alu 2 114 -36 5 976 276 30 0 0 chr6 51327304 51327337 -98189700 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 976 409 286 80 85 chr6 51327512 51327711 -98189326 - B4A SINE B4 -3 289 92 5 976 23 0 0 0 chr6 51328295 51328318 -98188719 + AT_rich Low_complexity Low_complexity 1 23 0 5 976 205 250 0 37 chr6 51328332 51328386 -98188651 + GA-rich Low_complexity Low_complexity 4 55 0 5 976 794 196 28 56 chr6 51328536 51328714 -98188323 - B3 SINE B2 0 216 44 5 976 1144 120 130 0 chr6 51328714 51328914 -98188123 + URR1A DNA MER1_type 1 226 0 5 976 265 269 0 191 chr6 51328914 51328933 -98188104 - B2_Mm2 SINE B2 -143 52 34 5 976 400 270 32 110 chr6 51328972 51329126 -98187911 + ID_B1 SINE B4 78 219 -5 5 976 29 0 0 0 chr6 51329126 51329155 -98187882 + AT_rich Low_complexity Low_complexity 1 29 0 5 976 26 0 0 0 chr6 51329396 51329422 -98187615 + AT_rich Low_complexity Low_complexity 1 26 0 5 976 294 325 76 24 chr6 51329953 51330180 -98186857 + MIRc SINE MIR 11 253 -15 5 976 611 291 77 14 chr6 51330784 51330993 -98186044 + MER58B DNA MER1_type 51 272 -69 5 976 413 71 0 0 chr6 51330985 51331041 -98185996 + B1_Mus2 SINE Alu 85 140 -7 5 976 750 53 0 0 chr6 51331044 51331139 -98185898 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 5 976 923 182 30 65 chr6 51331949 51332149 -98184888 + B3A SINE B2 3 195 -3 5 976 309 241 0 0 chr6 51332382 51332436 -98184601 - ID_B1 SINE B4 -6 218 165 5 976 397 200 93 19 chr6 51332831 51332938 -98184099 + ID_B1 SINE B4 42 156 -68 5 976 260 297 96 29 chr6 51332939 51333043 -98183994 + B4 SINE B4 1 111 -181 5 976 576 91 0 0 chr6 51333186 51333274 -98183763 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 976 429 20 0 0 chr6 51333274 51333324 -98183713 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 976 335 216 11 43 chr6 51333334 51333426 -98183611 - MER5B DNA MER1_type -9 169 81 5 976 198 0 0 0 chr6 51334080 51334102 -98182935 + (A)n Simple_repeat Simple_repeat 1 22 0 5 976 189 0 0 0 chr6 51334341 51334362 -98182675 + (A)n Simple_repeat Simple_repeat 1 21 0 5 976 1609 102 8 4 chr6 51334479 51334714 -98182323 + L1_Mus3 LINE L1 6398 6633 -5 5 976 355 141 31 0 chr6 51334763 51334827 -98182210 + L1MB2 LINE L1 6091 6156 -15 5 976 1258 48 0 0 chr6 51334896 51335043 -98181994 - B1_Mus2 SINE Alu 0 147 1 6 976 188 267 0 0 chr6 51335406 51335451 -98181586 + L2 LINE L2 2449 2493 -926 6 976 275 143 54 24 chr6 51335629 51335699 -98181338 - B1F SINE Alu -2 147 37 6 976 906 125 138 0 chr6 51335863 51336015 -98181022 + B2_Mm1t SINE B2 1 173 -20 6 976 298 101 531 0 chr6 51336035 51336131 -98180906 + B2_Mm2 SINE B2 47 193 -2 6 976 205 170 208 0 chr6 51336778 51336831 -98180206 + MIRm SINE MIR 95 158 -118 6 976 723 278 50 15 chr6 51336845 51336919 -98180118 + B4 SINE B4 9 82 -210 6 976 243 0 0 0 chr6 51336919 51336946 -98180091 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 6 976 723 278 50 15 chr6 51336946 51337072 -98179965 + B4 SINE B4 83 215 -77 6 976 180 0 0 0 chr6 51337077 51337097 -98179940 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 976 305 294 0 66 chr6 51337099 51337190 -98179847 + RSINE1 SINE B4 3 87 -78 6 976 225 0 0 0 chr6 51337199 51337224 -98179813 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 976 252 0 0 0 chr6 51337224 51337251 -98179786 + (TA)n Simple_repeat Simple_repeat 1 28 0 6 976 210 246 35 0 chr6 51337309 51337366 -98179671 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 6 976 1254 164 27 199 chr6 51337448 51337822 -98179215 + ORR1D1 LTR MaLR 5 317 -57 6 976 1253 111 32 0 chr6 51337822 51338011 -98179026 - B2_Mm2 SINE B2 0 195 1 6 976 1254 164 27 199 chr6 51338011 51338078 -98178959 + ORR1D1 LTR MaLR 318 370 -4 6 976 309 235 30 20 chr6 51338117 51338217 -98178820 - L1ME3A LINE L1 -184 5989 5889 6 976 795 198 152 98 chr6 51338373 51338452 -98178585 + ORR1E LTR MaLR 1 67 -292 6 976 5778 118 73 16 chr6 51338452 51339357 -98177680 - RMER17B LTR ERVK 0 958 2 6 976 795 198 152 98 chr6 51339357 51339501 -98177536 + ORR1E LTR MaLR 68 236 -123 6 976 1746 229 142 11 chr6 51339501 51340045 -98176992 + RLTR17 LTR ERVK 1 615 -77 6 976 259 271 15 106 chr6 51340069 51340088 -98176949 + ORR1E LTR MaLR 256 274 -105 6 976 191 36 36 0 chr6 51340088 51340116 -98176921 + (CCA)n Simple_repeat Simple_repeat 2 30 0 6 976 482 167 0 89 chr6 51340116 51340228 -98176809 + ORR1E LTR MaLR 265 366 -4 6 976 276 280 40 13 chr6 51340250 51340326 -98176711 - ID4_ SINE ID -4 79 2 6 976 228 258 30 0 chr6 51340919 51340985 -98176052 + CT-rich Low_complexity Low_complexity 2 69 0 6 976 221 246 40 40 chr6 51341094 51341170 -98175867 + ID_B1 SINE B4 95 170 -54 6 976 21 0 0 0 chr6 51341181 51341202 -98175835 + AT_rich Low_complexity Low_complexity 1 21 0 6 976 1472 220 107 43 chr6 51341785 51342179 -98174858 - MTD LTR MaLR 0 419 1 6 976 195 237 0 0 chr6 51342333 51342371 -98174666 + L2b LINE L2 3333 3370 -5 6 976 771 253 0 0 chr6 51342530 51342680 -98174357 + RSINE1 SINE B4 1 150 -15 6 976 245 372 23 83 chr6 51342888 51342949 -98174088 + MARNA DNA Mariner 55 107 -479 6 976 674 241 52 31 chr6 51342949 51343142 -98173895 - B3A SINE B2 0 198 2 6 976 299 277 24 12 chr6 51343142 51343219 -98173818 - MARNA DNA Mariner -108 478 401 6 976 866 200 61 33 chr6 51343219 51343400 -98173637 + B2_Mm2 SINE B2 1 186 -9 6 976 625 161 142 30 chr6 51343495 51343629 -98173408 + B1_Mur2 SINE Alu 1 149 0 6 976 275 277 33 67 chr6 51343794 51343914 -98173123 - PB1D10 SINE Alu 0 117 2 6 976 581 278 44 29 chr6 51344057 51344261 -98172776 + ORR1E LTR MaLR 1 207 -152 6 976 218 307 112 11 chr6 51344265 51344354 -98172683 - L2a LINE L2 -22 3404 3307 6 976 229 184 0 0 chr6 51344366 51344404 -98172633 - PB1D9 SINE Alu -16 104 67 6 976 203 225 0 0 chr6 51344790 51344830 -98172207 + L2b LINE L2 3324 3363 -12 6 976 267 207 35 0 chr6 51344839 51344897 -98172140 + ID SINE ID 2 61 -163 6 976 663 90 0 0 chr6 51344911 51345011 -98172026 + (TG)n Simple_repeat Simple_repeat 2 101 0 6 976 219 247 84 72 chr6 51345310 51345393 -98171644 + L2b LINE L2 3252 3335 -40 6 976 1837 227 38 48 chr6 51345492 51345996 -98171041 + RLTR16 LTR ERVK 4 502 -3 6 976 588 277 36 0 chr6 51346287 51346424 -98170613 - RSINE1 SINE B4 -18 147 6 6 976 445 189 106 8 chr6 51346655 51346778 -98170259 - Lx7 LINE L1 -1 7695 7561 6 976 612 160 0 0 chr6 51346782 51346876 -98170161 + B1_Mus2 SINE Alu 2 95 -52 6 976 320 23 45 0 chr6 51346899 51346943 -98170094 + (CATAA)n Simple_repeat Simple_repeat 2 47 0 6 976 533 168 23 80 chr6 51346953 51347128 -98169909 - Lx7 LINE L1 -173 7523 7359 6 976 1696 203 33 6 chr6 51347175 51347541 -98169496 - Lx7 LINE L1 -309 7387 7012 6 976 1693 185 95 110 chr6 51347533 51347808 -98169229 + Lx7 LINE L1 6550 6844 -852 6 976 1192 100 67 0 chr6 51347808 51347988 -98169049 - B2_Mm1t SINE B2 0 193 2 6 976 1693 185 95 110 chr6 51347988 51348084 -98168953 + Lx7 LINE L1 6845 6901 -795 6 976 1561 115 48 32 chr6 51348084 51348336 -98168701 - Lx3A LINE L1 -7 6974 6719 6 976 1693 185 95 110 chr6 51348336 51348425 -98168612 + Lx7 LINE L1 6902 7004 -692 6 976 61 27 0 0 chr6 51348539 51348614 -98168423 + AT_rich Low_complexity Low_complexity 1 75 0 6 976 4705 161 43 114 chr6 51348617 51349744 -98167293 - RMER1B Other Other -19 1047 2 6 976 614 193 109 0 chr6 51349863 51349982 -98167055 - B1_Mur4 SINE Alu 0 150 19 6 976 25 0 0 0 chr6 51349988 51350013 -98167024 + AT_rich Low_complexity Low_complexity 1 25 0 6 976 1177 62 0 7 chr6 51350327 51350474 -98166563 + B1_Mm SINE Alu 2 147 0 6 976 1288 81 34 93 chr6 51350554 51350759 -98166278 + B2_Mm1t SINE B2 1 193 0 6 976 265 213 75 5 chr6 51350768 51350841 -98166196 + B1_Mus2 SINE Alu 2 86 -64 6 976 496 196 65 0 chr6 51350839 51350931 -98166106 + B1_Mus2 SINE Alu 44 141 -6 6 976 213 39 0 0 chr6 51350934 51350960 -98166077 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 976 223 257 87 110 chr6 51351015 51351142 -98165895 + B3A SINE B2 73 196 -2 6 976 4216 96 12 0 chr6 51352966 51353571 -98163466 + Lx LINE L1 5767 6378 -276 6 976 243 324 0 146 chr6 51354054 51354128 -98162909 - PB1 SINE Alu -4 123 65 6 976 1016 107 17 35 chr6 51354128 51354302 -98162735 - Lx4B LINE L1 -2 7056 6886 6 976 243 324 0 146 chr6 51354302 51354357 -98162680 - PB1 SINE Alu -63 64 13 6 976 180 0 0 0 chr6 51354917 51354937 -98162100 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 976 368 200 145 27 chr6 51354951 51355123 -98161914 - B3 SINE B2 0 195 10 6 976 374 238 85 9 chr6 51355215 51355321 -98161716 - MIR SINE MIR -62 200 87 6 976 226 242 60 15 chr6 51355334 51355401 -98161636 - MLT1A0 LTR MaLR -48 317 248 6 976 254 197 0 29 chr6 51355434 51355502 -98161535 + GA-rich Low_complexity Low_complexity 3 68 0 6 976 1731 222 52 3 chr6 51356118 51356465 -98160572 + ORR1D2 LTR MaLR 2 365 -5 6 976 695 150 145 29 chr6 51356754 51356933 -98160104 + B3 SINE B2 2 193 -2 6 976 306 152 0 0 chr6 51357191 51357250 -98159787 + GA-rich Low_complexity Low_complexity 3 61 0 6 976 238 188 61 20 chr6 51357633 51357682 -98159355 - B1_Mus2 SINE Alu -2 145 95 6 976 6092 114 37 14 chr6 51357682 51358683 -98158354 - Lx4A LINE L1 -87 6971 5948 6 976 254 265 108 81 chr6 51358749 51358764 -98158273 + MT2B LTR ERVL 142 159 -442 6 976 346 324 42 56 chr6 51358764 51358908 -98158129 + PB1D10 SINE Alu 1 142 -5 6 976 775 211 11 50 chr6 51359265 51359443 -98157594 + ID_B1 SINE B4 66 224 0 6 976 234 0 0 0 chr6 51359565 51359591 -98157446 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 976 259 340 0 0 chr6 51359601 51359704 -98157333 + (TG)n Simple_repeat Simple_repeat 1 103 0 6 976 411 314 8 25 chr6 51360057 51360178 -98156859 + RSINE1 SINE B4 47 165 0 6 976 560 268 82 18 chr6 51360519 51360690 -98156347 - B3A SINE B2 -16 182 1 6 976 240 303 12 84 chr6 51360995 51361078 -98155959 - MLT1A LTR MaLR -277 97 21 6 976 2036 152 80 3 chr6 51361304 51361653 -98155384 - ORR1C1 LTR MaLR 0 378 3 6 976 3090 61 36 0 chr6 51361653 51362046 -98154991 - MTB_Mm LTR MaLR 0 407 1 6 976 27 29 0 0 chr6 51362329 51362363 -98154674 + AT_rich Low_complexity Low_complexity 1 34 0 6 976 829 165 0 8 chr6 51362932 51363066 -98153971 - ORR1C2 LTR MaLR 0 384 252 6 976 1335 267 104 12 chr6 51363107 51363528 -98153509 - MER70A LTR ERVL -3 469 10 6 976 472 282 132 5 chr6 51363826 51364015 -98153022 + RMER20B LTR ERVK 180 392 -235 6 976 194 363 62 46 chr6 51364236 51364366 -98152671 + L3 LINE CR1 4119 4250 -239 6 976 563 270 16 16 chr6 51365002 51365130 -98151907 + RSINE1 SINE B4 3 130 -35 6 976 207 69 0 0 chr6 51365157 51365186 -98151851 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 976 2508 142 15 17 chr6 51365444 51365852 -98151185 - MTB_Mm LTR MaLR 0 407 1 6 976 2933 112 120 72 chr6 51365858 51365904 -98151133 + RMER4B LTR ERVK 1 47 -538 6 976 1269 54 0 0 chr6 51365904 51366052 -98150985 + B1_Mus1 SINE Alu 1 148 0 6 976 2933 112 120 72 chr6 51366052 51366563 -98150474 + RMER4B LTR ERVK 48 585 0 6 976 608 216 275 15 chr6 51367437 51367699 -98149338 - MTD LTR MaLR -53 366 1 6 976 1275 16 35 0 chr6 51368009 51368381 -98148656 + (CCTG)n Simple_repeat Simple_repeat 1 385 0 6 976 270 370 126 18 chr6 51368388 51368611 -98148426 + L2a LINE L2 3180 3426 0 6 976 469 347 0 0 chr6 51369604 51369728 -98147309 + RSINE1 SINE B4 4 127 -38 6 976 314 45 23 0 chr6 51369747 51369791 -98147246 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 976 1098 205 19 28 chr6 51369920 51370136 -98146901 + B3 SINE B2 3 216 0 6 976 1086 8 0 0 chr6 51371065 51371188 -98145849 + (GAA)n Simple_repeat Simple_repeat 2 124 0 6 976 286 272 88 0 chr6 51371476 51371590 -98145447 - L1MA9 LINE L1 -8 6304 6181 6 976 1657 176 99 6 chr6 51371715 51372057 -98144980 - ORR1D1 LTR MaLR 0 374 1 6 976 538 199 4 30 chr6 51372057 51372201 -98144836 - ORR1D1-int LTR MaLR -53 1527 1271 6 976 284 189 0 13 chr6 51372309 51372384 -98144653 + (CCG)n Simple_repeat Simple_repeat 3 76 0 6 976 392 294 157 15 chr6 51372647 51372844 -98144193 + MER21B LTR ERV1 561 785 -78 7 976 200 176 0 0 chr6 51373000 51373034 -98144003 + G-rich Low_complexity Low_complexity 1 34 0 7 976 540 306 91 82 chr6 51374361 51374705 -98142332 - MLT1F2 LTR MaLR -161 408 63 7 976 1414 244 65 81 chr6 51374841 51375363 -98141674 - RLTR12B LTR ERVK -12 516 3 7 976 3557 174 17 78 chr6 51375499 51376302 -98140735 - ORR1A3-int LTR MaLR -971 992 239 7 976 827 167 69 0 chr6 51376296 51376440 -98140597 + MTC LTR MaLR 260 413 -8 7 976 1003 223 51 35 chr6 51376444 51376747 -98140290 + Lx7 LINE L1 5297 5635 -544 7 976 1348 191 39 206 chr6 51376747 51377208 -98139829 + ORR1C2 LTR MaLR 1 384 0 7 976 551 274 39 64 chr6 51377208 51377228 -98139809 + Lx7 LINE L1 5636 5660 -519 7 976 375 134 75 0 chr6 51377292 51377359 -98139678 + ORR1C2 LTR MaLR 313 384 0 7 976 1610 251 102 26 chr6 51377359 51377600 -98139437 + Lx7 LINE L1 5653 5902 -1794 7 976 1736 216 129 66 chr6 51377600 51378149 -98138888 + RLTR31A_Mm LTR ERVK 1 584 0 7 976 1610 250 101 27 chr6 51378149 51378555 -98138482 + Lx7 LINE L1 5903 6332 -1364 7 976 234 0 0 0 chr6 51378703 51378729 -98138308 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 976 1110 67 0 0 chr6 51378729 51378864 -98138173 - B1_Mm SINE Alu -11 136 2 7 976 488 255 99 0 chr6 51378916 51379057 -98137980 + MER2 DNA MER2_type 38 192 -153 7 976 565 221 16 39 chr6 51379175 51379302 -98137735 + RMER20B LTR ERVK 1 124 -503 7 976 228 285 88 138 chr6 51379495 51379654 -98137383 + RMER20B LTR ERVK 366 516 0 7 976 1241 48 0 0 chr6 51379706 51379853 -98137184 + B1_Mus2 SINE Alu 1 147 0 7 976 482 236 8 68 chr6 51379882 51380000 -98137037 + B1_Mur1 SINE Alu 2 112 -37 7 976 905 135 37 8 chr6 51380036 51380170 -98136867 - B1_Mur4 SINE Alu -10 140 3 7 15 357 24 0 0 chr6 51380184 51380226 -98136811 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 7 977 236 307 37 56 chr6 51380228 51380335 -98136702 - PB1D10 SINE Alu -4 113 9 7 977 264 269 22 131 chr6 51380248 51380385 -98136652 - ID_B1 SINE B4 -53 171 50 7 977 444 324 21 28 chr6 51380385 51380528 -98136509 + RSINE1 SINE B4 3 144 -21 7 977 334 146 36 0 chr6 51380495 51380550 -98136487 - ID SINE ID -160 64 8 7 977 326 205 0 13 chr6 51380747 51380826 -98136211 + GA-rich Low_complexity Low_complexity 4 81 0 7 977 309 278 83 9 chr6 51381043 51381152 -98135885 + PB1D9 SINE Alu 2 118 -2 7 977 584 199 4 40 chr6 51381262 51381490 -98135547 + GA-rich Low_complexity Low_complexity 1 219 0 7 977 219 247 84 72 chr6 51381600 51381683 -98135354 - L2b LINE L2 -40 3335 3252 7 977 190 292 88 59 chr6 51381916 51382018 -98135019 - MIR SINE MIR -142 120 16 7 977 202 302 81 0 chr6 51382186 51382272 -98134765 - MIR SINE MIR -71 191 99 7 977 247 229 96 47 chr6 51384827 51384948 -98132089 - MIR SINE MIR -79 129 2 7 977 387 0 0 0 chr6 51385190 51385233 -98131804 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 7 977 276 320 43 11 chr6 51385236 51385359 -98131678 - MIR SINE MIR -138 138 11 7 977 426 297 27 9 chr6 51385519 51385631 -98131406 - ID_B1 SINE B4 -18 206 93 7 977 252 312 44 52 chr6 51385611 51385645 -98131392 - MT2B2 LTR ERVL -296 288 188 7 977 456 236 3 0 chr6 51385645 51385737 -98131300 - PB1D10 SINE Alu -54 95 1 7 977 1086 186 34 5 chr6 51385765 51385970 -98131067 + B3 SINE B2 3 213 -3 7 977 822 213 13 6 chr6 51386591 51386747 -98130290 + B3 SINE B2 3 159 -57 7 977 434 264 139 61 chr6 51386752 51386917 -98130120 + B3 SINE B2 39 216 0 7 977 423 288 248 14 chr6 51387330 51387695 -98129342 - MLT1C LTR MaLR -15 452 2 7 977 450 184 0 0 chr6 51389970 51390046 -98126991 + RSINE1 SINE B4 50 125 -40 7 977 447 52 0 0 chr6 51390046 51390104 -98126933 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 977 249 33 0 0 chr6 51390109 51390139 -98126898 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 7 977 646 203 30 5 chr6 51390178 51390348 -98126689 - B3 SINE B2 -10 185 1 7 977 842 124 68 23 chr6 51390349 51390481 -98126556 - B1_Mur3 SINE Alu -11 138 1 7 977 595 246 51 46 chr6 51390664 51390839 -98126198 + ID_B1 SINE B4 21 196 -28 7 977 297 0 0 0 chr6 51390914 51390947 -98126090 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 977 1256 42 127 0 chr6 51391453 51391619 -98125418 + B2_Mm2 SINE B2 1 187 -8 7 977 774 60 0 0 chr6 51391619 51391719 -98125318 + (GGA)n Simple_repeat Simple_repeat 3 102 0 7 977 912 158 0 7 chr6 51391730 51391877 -98125160 + B1_Mus1 SINE Alu 3 148 0 7 977 234 91 0 0 chr6 51391879 51391912 -98125125 + (GA)n Simple_repeat Simple_repeat 1 33 0 7 977 373 264 88 3 chr6 51391974 51392145 -98124892 + MIR SINE MIR 68 268 0 7 977 279 0 0 0 chr6 51392850 51392881 -98124156 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 977 1210 74 0 15 chr6 51392914 51393121 -98123916 + (TTTC)n Simple_repeat Simple_repeat 1 203 0 7 977 1728 16 0 0 chr6 51393430 51393622 -98123415 + B2_Mm1a SINE B2 1 192 -1 7 977 292 209 0 29 chr6 51393676 51393745 -98123292 - MIRc SINE MIR -119 149 83 7 977 303 274 31 21 chr6 51394380 51394477 -98122560 + PB1D10 SINE Alu 2 99 -18 7 977 21 0 0 0 chr6 51394483 51394504 -98122533 + AT_rich Low_complexity Low_complexity 1 21 0 7 977 845 166 115 21 chr6 51394548 51394576 -98122461 - B3 SINE B2 -6 210 183 7 977 366 23 0 0 chr6 51394576 51394619 -98122418 + (TATG)n Simple_repeat Simple_repeat 3 45 0 7 977 845 166 115 21 chr6 51394619 51394781 -98122256 - B3 SINE B2 -34 182 4 7 977 304 232 0 0 chr6 51394831 51394900 -98122137 - PB1D7 SINE Alu -8 112 44 7 977 228 180 0 103 chr6 51394848 51394916 -98122121 - 4.5SRNA scRNA scRNA -4 90 30 7 977 649 188 20 55 chr6 51395307 51395453 -98121584 + B1_Mur2 SINE Alu 3 143 -6 7 977 931 191 37 0 chr6 51395465 51395653 -98121384 + B3 SINE B2 1 195 -21 7 977 425 250 147 22 chr6 51395963 51396188 -98120849 - L1MC4a LINE L1 -390 7492 7240 7 977 711 176 88 0 chr6 51396375 51396500 -98120537 - B1_Mur1 SINE Alu -10 139 4 7 977 378 0 0 0 chr6 51396723 51396765 -98120272 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 977 573 0 0 93 chr6 51397030 51397159 -98119878 + (TCC)n Simple_repeat Simple_repeat 1 117 0 7 977 832 171 7 33 chr6 51397350 51397501 -98119536 + B1_Mur3 SINE Alu 2 148 -1 7 977 764 181 23 0 chr6 51397611 51397744 -98119293 + B1_Mus1 SINE Alu 2 137 -11 7 977 555 284 156 40 chr6 51397766 51397990 -98119047 + B4A SINE B4 31 280 -12 7 977 219 227 0 0 chr6 51398032 51398098 -98118939 + GA-rich Low_complexity Low_complexity 1 66 0 7 977 230 164 107 107 chr6 51398217 51398292 -98118745 + B3 SINE B2 2 76 -140 7 977 714 91 99 0 chr6 51398266 51398387 -98118650 + B1_Mus2 SINE Alu 14 146 -1 7 977 648 272 50 11 chr6 51398393 51398575 -98118462 + B3 SINE B2 28 216 0 7 977 1033 67 67 0 chr6 51398598 51398732 -98118305 + B1_Mus1 SINE Alu 1 143 -5 7 977 302 45 23 0 chr6 51398754 51398798 -98118239 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 977 1730 21 0 0 chr6 51398933 51399125 -98117912 + B2_Mm1a SINE B2 1 192 -1 7 977 186 118 0 0 chr6 51399144 51399178 -98117859 + (A)n Simple_repeat Simple_repeat 1 34 0 7 977 293 318 196 21 chr6 51399182 51399462 -98117575 - L2 LINE L2 -1283 2136 1808 7 977 316 315 28 0 chr6 51399827 51399935 -98117102 + PB1D7 SINE Alu 3 113 -7 7 977 292 208 88 106 chr6 51399947 51400060 -98116977 + PB1D7 SINE Alu 6 119 -1 7 977 673 164 309 0 chr6 51400198 51400363 -98116674 + B3 SINE B2 1 216 0 7 977 22 0 0 0 chr6 51400720 51400742 -98116295 + AT_rich Low_complexity Low_complexity 1 22 0 7 977 963 56 0 21 chr6 51401264 51401403 -98115634 + B1_Mus1 SINE Alu 11 148 0 7 977 1248 78 66 0 chr6 51401469 51401636 -98115401 + B2_Mm1t SINE B2 2 179 -14 7 977 212 218 0 35 chr6 51401686 51401743 -98115294 + B2_Mm2 SINE B2 47 101 -94 7 977 22 0 0 0 chr6 51401754 51401776 -98115261 + AT_rich Low_complexity Low_complexity 1 22 0 7 977 204 40 0 0 chr6 51401776 51401801 -98115236 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 7 977 272 91 0 43 chr6 51402453 51402499 -98114538 - RMER5 LTR ERV1 0 534 491 7 977 275 76 214 0 chr6 51402502 51402567 -98114470 + B1_Mur4 SINE Alu 1 89 -61 7 977 622 47 0 0 chr6 51402552 51402637 -98114400 - B1_Mus2 SINE Alu -61 86 2 7 977 344 209 0 75 chr6 51402555 51402648 -98114389 - MT2B LTR ERVL -361 240 155 7 977 1214 179 112 25 chr6 51402660 51402981 -98114056 - RMER5 LTR ERV1 -181 353 5 7 977 220 303 44 11 chr6 51403773 51403863 -98113174 + PB1D10 SINE Alu 13 105 -12 7 977 216 261 0 0 chr6 51404129 51404175 -98112862 - B1F2 SINE Alu -102 47 2 7 977 709 222 140 0 chr6 51404384 51404555 -98112482 - B3 SINE B2 -18 198 4 7 977 777 264 67 5 chr6 51404981 51405190 -98111847 - ID_B1 SINE B4 0 224 3 7 977 781 173 58 0 chr6 51405432 51405571 -98111466 + B1_Mur1 SINE Alu 2 148 -1 7 977 1150 74 0 0 chr6 51405575 51405723 -98111314 + B1_Mus1 SINE Alu 1 148 0 7 977 297 0 0 0 chr6 51405739 51405772 -98111265 + (TA)n Simple_repeat Simple_repeat 1 33 0 7 977 231 36 0 0 chr6 51405772 51405799 -98111238 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 977 418 215 24 47 chr6 51405958 51406085 -98110952 - RSINE1 SINE B4 -16 149 26 7 977 556 147 4 14 chr6 51406268 51406387 -98110650 + B1_Mus2 SINE Alu 26 140 -10 7 977 282 322 17 9 chr6 51406400 51406516 -98110521 + PB1D10 SINE Alu 1 117 0 8 977 24 67 0 0 chr6 51408741 51408786 -98108251 + AT_rich Low_complexity Low_complexity 1 45 0 8 977 499 146 52 10 chr6 51409017 51409114 -98107923 + B1_Mus1 SINE Alu 6 106 -42 8 977 414 138 88 0 chr6 51409492 51409572 -98107465 - B2_Mm2 SINE B2 -107 88 2 8 977 204 67 0 0 chr6 51416833 51416863 -98100174 + (A)n Simple_repeat Simple_repeat 1 30 0 8 977 21 0 0 0 chr6 51417694 51417715 -98099322 + AT_rich Low_complexity Low_complexity 1 21 0 8 977 23 97 0 0 chr6 51420586 51420658 -98096379 + GC_rich Low_complexity Low_complexity 1 72 0 8 977 230 215 46 0 chr6 51421273 51421338 -98095699 + B1F SINE Alu 32 99 -50 8 977 528 148 0 0 chr6 51421953 51422034 -98095003 + B1_Mus2 SINE Alu 54 134 -13 8 977 21 0 0 0 chr6 51422675 51422696 -98094341 + AT_rich Low_complexity Low_complexity 1 21 0 8 977 409 185 194 0 chr6 51422703 51422811 -98094226 + B1_Mus1 SINE Alu 1 129 -19 8 977 431 296 53 0 chr6 51422836 51422968 -98094069 + B1F SINE Alu 5 143 -6 8 977 263 277 0 30 chr6 51423419 51423486 -98093551 + B4A SINE B4 86 150 -142 8 977 386 213 125 21 chr6 51423426 51423522 -98093515 + PB1D7 SINE Alu 8 113 -7 8 977 363 303 0 10 chr6 51424116 51424216 -98092821 + ID_B1 SINE B4 113 211 -13 8 977 183 80 0 0 chr6 51424241 51424266 -98092771 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 8 977 926 205 68 131 chr6 51424283 51424366 -98092671 - ORR1D1 LTR MaLR -1 373 301 8 977 1187 48 0 20 chr6 51424366 51424516 -98092521 + B1_Mm SINE Alu 1 147 0 8 977 926 205 68 131 chr6 51424516 51424814 -98092223 - ORR1D1 LTR MaLR -74 300 16 8 977 322 235 143 0 chr6 51425403 51425501 -98091536 - PB1D10 SINE Alu 0 117 6 8 977 468 280 66 88 chr6 51425519 51425591 -98091446 - ID_B1 SINE B4 -1 223 163 8 977 1237 34 0 7 chr6 51425591 51425738 -98091299 + B1_Mm SINE Alu 2 147 0 8 977 468 280 66 88 chr6 51425738 51425892 -98091145 - ID_B1 SINE B4 -62 162 2 8 977 854 239 25 25 chr6 51426000 51426202 -98090835 + B3 SINE B2 5 206 -10 8 977 895 101 0 0 chr6 51427018 51427147 -98089890 + B2_Mm2 SINE B2 1 129 -66 8 977 207 0 0 0 chr6 51427162 51427185 -98089852 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 8 977 1227 55 0 0 chr6 51427311 51427457 -98089580 - B1_Mus2 SINE Alu -1 146 1 8 977 1144 106 65 27 chr6 51427457 51427641 -98089396 - B2_Mm2 SINE B2 -2 193 2 8 977 373 217 215 8 chr6 51428002 51428123 -98088914 + ID_B1 SINE B4 1 146 -78 8 977 225 225 11 149 chr6 51428077 51428171 -98088866 + B1F SINE Alu 20 100 -49 8 977 482 238 19 0 chr6 51428920 51429025 -98088012 - PB1D9 SINE Alu -13 107 1 8 977 241 263 179 12 chr6 51429575 51429748 -98087289 - MIR SINE MIR -32 230 29 8 977 356 252 35 0 chr6 51429870 51429968 -98087069 + B1_Mur2 SINE Alu 1 102 -18 8 977 631 228 127 24 chr6 51430008 51430174 -98086863 + B3 SINE B2 23 205 -11 8 977 433 287 36 18 chr6 51430509 51430619 -98086418 + PB1D7 SINE Alu 2 113 -7 8 977 316 216 68 0 chr6 51430633 51430707 -98086330 - PB1D10 SINE Alu -8 109 31 8 977 663 147 16 57 chr6 51430718 51430841 -98086196 - PB1D9 SINE Alu -1 119 2 8 977 605 251 78 0 chr6 51430885 51431052 -98085985 - B3A SINE B2 -18 180 1 8 977 301 273 148 0 chr6 51431074 51431162 -98085875 - PB1D10 SINE Alu -7 110 10 8 977 246 262 34 45 chr6 51431416 51431504 -98085533 - PB1D10 SINE Alu 0 117 31 8 977 272 333 0 0 chr6 51431502 51431568 -98085469 - ID SINE ID -157 67 2 8 977 242 234 0 50 chr6 51431833 51431932 -98085105 + T-rich Low_complexity Low_complexity 5 98 0 8 977 243 293 23 87 chr6 51431934 51432106 -98084931 - RSINE1 SINE B4 0 165 5 8 977 219 36 0 0 chr6 51432616 51432644 -98084393 + (TA)n Simple_repeat Simple_repeat 1 28 0 8 977 258 56 0 0 chr6 51432961 51432997 -98084040 + (T)n Simple_repeat Simple_repeat 1 36 0 8 977 218 235 84 24 chr6 51433775 51433858 -98083179 - PB1D10 SINE Alu -1 116 29 8 977 1207 50 0 0 chr6 51434178 51434319 -98082718 - B1_Mus2 SINE Alu -6 141 1 8 977 483 237 26 9 chr6 51434396 51434511 -98082526 - B3A SINE B2 -80 118 2 8 977 1125 88 0 0 chr6 51434562 51434710 -98082327 + B1_Mus1 SINE Alu 1 148 0 8 977 1135 88 0 0 chr6 51434710 51434857 -98082180 + B1_Mm SINE Alu 1 147 0 8 977 1203 135 0 0 chr6 51434859 51435037 -98082000 - B2_Mm2 SINE B2 -17 178 1 8 977 1096 48 7 0 chr6 51435204 51435350 -98081687 + B1_Mus1 SINE Alu 2 148 0 8 977 477 0 0 0 chr6 51435469 51435522 -98081515 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 977 516 264 41 25 chr6 51435979 51436185 -98080852 + L1M2 LINE L1 4651 4888 -1255 8 977 1182 228 78 35 chr6 51436776 51437150 -98079887 - MTD LTR MaLR -31 388 1 8 977 1087 61 42 30 chr6 51437559 51437727 -98079310 + B2_Mm2 SINE B2 2 171 -24 8 977 2061 178 87 99 chr6 51437896 51438005 -98079032 - RLTR20D LTR ERVK 0 568 468 8 977 1185 62 0 0 chr6 51438005 51438151 -98078886 - B1_Mm SINE Alu 0 147 2 8 977 2061 178 87 99 chr6 51438151 51438355 -98078682 - RLTR20D LTR ERVK -101 467 231 8 977 2395 104 194 22 chr6 51438355 51438809 -98078228 - RLTR47_MM LTR ERV1 0 532 1 8 977 2061 178 87 99 chr6 51438809 51438993 -98078044 - RLTR20D LTR ERVK -338 230 76 8 977 1238 58 109 6 chr6 51438993 51439167 -98077870 + B2_Mm1a SINE B2 2 193 0 8 977 2061 178 87 99 chr6 51439167 51439242 -98077795 - RLTR20D LTR ERVK -493 75 1 8 977 504 0 0 0 chr6 51439358 51439414 -98077623 + (TC)n Simple_repeat Simple_repeat 2 57 0 8 977 487 108 51 3 chr6 51439415 51439515 -98077522 - B1_Mus1 SINE Alu -4 116 2 8 977 246 331 186 7 chr6 51439686 51439826 -98077211 + RMER20B LTR ERVK 318 482 -145 8 977 235 200 114 51 chr6 51440211 51440290 -98076747 + L1MD LINE L1 5239 5322 -824 8 977 462 215 168 0 chr6 51440344 51440451 -98076586 + B1_Mus1 SINE Alu 1 125 -23 8 977 736 201 0 7 chr6 51440577 51440717 -98076320 - B1_Mur2 SINE Alu -1 148 10 8 977 356 264 10 10 chr6 51440723 51440852 -98076185 + L1_Rod LINE L1 5315 5502 -798 8 977 303 182 148 49 chr6 51440867 51440948 -98076089 - MurSatRep1 Unknown Unknown -1888 249 161 8 977 599 175 149 0 chr6 51441120 51441234 -98075803 - B1_Mur2 SINE Alu -18 131 1 8 977 1144 74 0 0 chr6 51441410 51441558 -98075479 - B1_Mus1 SINE Alu 0 148 1 8 977 649 268 123 42 chr6 51441778 51442039 -98074998 + ORR1E LTR MaLR 1 282 -77 8 977 1096 95 0 0 chr6 51442062 51442210 -98074827 + B1_Mus1 SINE Alu 1 148 0 8 977 1376 99 5 10 chr6 51442241 51442434 -98074603 + B2_Mm1a SINE B2 1 192 -1 8 977 621 230 0 80 chr6 51442448 51442599 -98074438 + B1_Mur4 SINE Alu 6 144 -6 8 977 678 92 240 16 chr6 51442604 51442725 -98074312 + B1_Mus1 SINE Alu 1 148 0 8 977 329 339 0 25 chr6 51442778 51442896 -98074141 + PB1D10 SINE Alu 1 115 -2 8 977 528 241 22 7 chr6 51442897 51443035 -98074002 + B1_Mm SINE Alu 3 142 -5 8 977 1234 48 0 0 chr6 51443057 51443204 -98073833 - B1_Mm SINE Alu 0 147 1 8 977 1951 174 75 5 chr6 51443230 51443616 -98073421 + MTC LTR MaLR 1 413 -8 8 977 1176 55 0 7 chr6 51443788 51443936 -98073101 + B1_Mus1 SINE Alu 2 148 0 8 977 1313 106 5 5 chr6 51444074 51444263 -98072774 + B2_Mm1a SINE B2 3 191 -2 8 977 1302 0 7 0 chr6 51444283 51444428 -98072609 - B1_Mus2 SINE Alu 0 147 2 8 977 432 353 9 0 chr6 51444452 51444568 -98072469 + PB1D7 SINE Alu 3 119 -1 8 977 808 149 92 12 chr6 51444601 51444764 -98072273 + RMER19C LTR ERVK 1 176 -435 8 977 956 90 0 94 chr6 51445301 51445461 -98071576 - B1_Mm SINE Alu -2 145 1 8 977 512 172 11 0 chr6 51445523 51445610 -98071427 + B1_Mur2 SINE Alu 13 100 -49 8 977 240 244 22 79 chr6 51445600 51445689 -98071348 - RLTR25B LTR ERVK -494 534 451 8 977 501 252 19 0 chr6 51445624 51445731 -98071306 - PB1D7 SINE Alu -5 115 7 8 977 266 363 13 58 chr6 51445772 51445875 -98071162 - ID_B1 SINE B4 -1 223 126 8 977 1990 154 64 59 chr6 51445875 51446053 -98070984 - ORR1B1 LTR MaLR 0 394 218 8 977 1151 89 70 27 chr6 51446053 51446238 -98070799 - B2_Mm2 SINE B2 -1 194 2 8 977 1990 154 64 59 chr6 51446238 51446451 -98070586 - ORR1B1 LTR MaLR -177 217 1 8 977 447 273 36 43 chr6 51446451 51446483 -98070554 - B1F SINE Alu -105 44 13 8 977 266 363 13 58 chr6 51446483 51446502 -98070535 - ID_B1 SINE B4 -99 125 76 8 977 742 209 7 21 chr6 51446551 51446693 -98070344 + B1_Mur3 SINE Alu 1 140 -9 8 977 916 135 43 0 chr6 51446748 51446889 -98070148 + B1_Mus1 SINE Alu 2 148 0 8 977 291 316 8 66 chr6 51446922 51447044 -98069993 - RLTR40 LTR ERVK -64 753 639 8 977 1793 221 91 32 chr6 51447062 51447558 -98069479 - RMER19C LTR ERVK 0 611 87 8 977 1522 226 100 49 chr6 51447557 51447802 -98069235 - RLTR40 LTR ERVK -259 558 284 8 977 336 48 0 0 chr6 51447802 51447844 -98069193 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 977 1522 226 100 49 chr6 51447844 51447933 -98069104 - RLTR40 LTR ERVK -534 283 199 8 977 2033 168 85 5 chr6 51447933 51448322 -98068715 + MTC LTR MaLR 1 420 -1 8 977 1522 226 100 49 chr6 51448322 51448478 -98068559 - RLTR40 LTR ERVK -619 198 42 8 977 1121 95 7 0 chr6 51448729 51448876 -98068161 - B1_Mus1 SINE Alu 0 148 1 8 977 711 179 29 36 chr6 51448961 51448983 -98068054 - B1_Mur4 SINE Alu -1 149 126 8 977 1831 148 102 16 chr6 51448983 51449346 -98067691 - ORR1B1 LTR MaLR 0 394 1 8 977 711 179 29 36 chr6 51449346 51449462 -98067575 - B1_Mur4 SINE Alu -25 125 12 8 977 899 88 16 0 chr6 51449506 51449631 -98067406 + B1_Mus1 SINE Alu 22 148 0 8 977 286 288 72 1 chr6 51449672 51449790 -98067247 + B3A SINE B2 91 216 0 9 977 790 255 52 52 chr6 51449820 51450089 -98066948 + Lx8 LINE L1 6710 6978 -495 9 977 244 283 104 0 chr6 51450112 51450218 -98066819 - MLT2B4 LTR ERVL -6 550 434 9 977 585 301 106 15 chr6 51450651 51450850 -98066187 - MT2A LTR ERVL -97 436 220 9 977 362 169 14 27 chr6 51450937 51451010 -98066027 - ORR1C2 LTR MaLR 0 384 313 9 977 1988 234 83 64 chr6 51451003 51451537 -98065500 + RLTR18 LTR ERVK 23 567 -49 9 977 1678 198 52 45 chr6 51451537 51451737 -98065300 - ORR1C2 LTR MaLR 0 384 185 9 977 230 75 0 48 chr6 51451737 51451779 -98065258 + (CAGAGA)n Simple_repeat Simple_repeat 4 43 0 9 977 1678 198 52 45 chr6 51451779 51451959 -98065078 - ORR1C2 LTR MaLR -200 184 1 9 977 587 198 42 17 chr6 51451966 51452084 -98064953 + B3 SINE B2 2 122 -94 9 977 21 0 0 0 chr6 51452117 51452138 -98064899 + AT_rich Low_complexity Low_complexity 1 21 0 9 977 462 250 10 0 chr6 51452145 51452249 -98064788 + Lx8 LINE L1 7019 7123 -350 9 977 463 338 26 32 chr6 51452782 51452938 -98064099 + ID_B1 SINE B4 1 155 -69 9 977 599 231 134 34 chr6 51452939 51453118 -98063919 + B3 SINE B2 1 197 -19 9 977 1040 143 99 50 chr6 51453161 51453286 -98063751 + RLTR14 LTR ERV1 3 145 -237 9 977 1486 108 58 234 chr6 51453286 51453683 -98063354 + ORR1A4 LTR MaLR 3 329 0 9 977 1040 143 99 50 chr6 51453683 51453748 -98063289 + RLTR14 LTR ERV1 146 203 -179 9 977 627 51 0 0 chr6 51453748 51453827 -98063210 + (TTTC)n Simple_repeat Simple_repeat 1 79 0 9 977 1040 143 99 50 chr6 51453827 51453856 -98063181 + RLTR14 LTR ERV1 204 234 -148 9 977 380 134 9 195 chr6 51453856 51454058 -98062979 - RMER17C LTR ERVK -137 273 86 9 977 1436 80 11 0 chr6 51454058 51454246 -98062791 + B2_Mm1t SINE B2 1 190 -3 9 977 1188 50 131 0 chr6 51454248 51454408 -98062629 - B2_Mm2 SINE B2 -14 181 1 9 977 1153 118 67 0 chr6 51454414 51454592 -98062445 + RLTR14 LTR ERV1 192 381 -1 9 977 225 94 0 0 chr6 51454672 51454704 -98062333 + (T)n Simple_repeat Simple_repeat 1 32 0 9 977 1065 90 28 0 chr6 51454705 51454849 -98062188 - B1_Mus1 SINE Alu 0 148 1 9 977 872 219 6 23 chr6 51454886 51455059 -98061978 + B3 SINE B2 47 216 0 9 977 470 231 107 33 chr6 51455065 51455186 -98061851 + B1_Mus2 SINE Alu 2 131 -16 9 977 312 252 99 134 chr6 51455069 51455193 -98061844 + ID_B1 SINE B4 87 208 -16 9 977 189 0 0 0 chr6 51455193 51455214 -98061823 + (TAA)n Simple_repeat Simple_repeat 1 21 0 9 977 312 252 99 134 chr6 51455214 51455231 -98061806 + ID_B1 SINE B4 209 223 -1 9 977 779 143 55 41 chr6 51455533 51455679 -98061358 + B1_Mus1 SINE Alu 1 148 0 9 977 432 0 0 0 chr6 51455701 51455749 -98061288 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 977 497 221 95 136 chr6 51456157 51456304 -98060733 - B1_Mur1 SINE Alu -1 148 8 9 977 250 341 185 79 chr6 51456216 51456360 -98060677 - B4 SINE B4 -95 197 1 9 977 252 88 0 0 chr6 51456360 51456394 -98060643 - B3 SINE B2 -182 34 1 9 977 225 0 0 0 chr6 51456473 51456498 -98060539 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 977 1160 56 7 0 chr6 51456498 51456641 -98060396 - B1_Mus2 SINE Alu -3 144 1 9 977 213 121 0 0 chr6 51456824 51456857 -98060180 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 9 977 1075 202 25 0 chr6 51456858 51457056 -98059981 - B3 SINE B2 -13 203 1 9 977 452 319 82 41 chr6 51457064 51457260 -98059777 - B4 SINE B4 -73 219 16 9 977 252 310 0 0 chr6 51457294 51457352 -98059685 - PB1D7 SINE Alu -10 110 53 9 977 1110 73 0 0 chr6 51457352 51457489 -98059548 + B1_Mus1 SINE Alu 2 138 -10 9 977 243 0 0 0 chr6 51457489 51457516 -98059521 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 977 197 33 33 0 chr6 51457801 51457831 -98059206 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 9 977 648 227 76 38 chr6 51458274 51458485 -98058552 - ID_B1 SINE B4 -1 223 5 9 977 454 320 115 24 chr6 51458656 51458864 -98058173 + RMER5 LTR ERV1 75 301 -233 9 977 615 237 110 36 chr6 51458983 51459202 -98057835 + RMER5 LTR ERV1 299 533 -1 9 977 2024 185 78 3 chr6 51459707 51460091 -98056946 + MTC LTR MaLR 1 413 -8 9 977 463 146 76 33 chr6 51460391 51460483 -98056554 + PB1D9 SINE Alu 25 120 0 9 977 194 0 0 37 chr6 51460530 51460557 -98056480 + (CCAA)n Simple_repeat Simple_repeat 1 26 0 9 977 370 124 44 11 chr6 51460611 51460701 -98056336 + CT-rich Low_complexity Low_complexity 1 93 0 9 977 426 294 101 20 chr6 51460760 51460909 -98056128 - RSINE1 SINE B4 -2 163 3 9 977 1228 54 0 0 chr6 51461307 51461454 -98055583 - B1_Mus2 SINE Alu 0 147 1 9 977 239 289 66 0 chr6 51461620 51461696 -98055341 + ID2 SINE ID 3 83 0 9 977 887 221 24 19 chr6 51461892 51462104 -98054933 - B3 SINE B2 -1 215 3 9 977 399 247 0 13 chr6 51462230 51462308 -98054729 + RSINE1 SINE B4 15 91 -74 9 977 900 193 52 36 chr6 51462323 51462517 -98054520 + MTD LTR MaLR 216 412 -7 9 977 225 47 70 0 chr6 51462530 51462573 -98054464 + (TA)n Simple_repeat Simple_repeat 1 46 0 9 977 551 324 28 14 chr6 51462601 51462745 -98054292 + B3A SINE B2 22 167 -31 9 977 212 211 35 0 chr6 51462750 51462807 -98054230 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 9 977 2093 110 13 10 chr6 51462944 51463256 -98053781 + ORR1A4 LTR MaLR 17 329 0 9 977 194 226 274 21 chr6 51463279 51463374 -98053663 - MIRb SINE MIR -36 232 114 9 977 627 264 12 36 chr6 51463454 51463619 -98053418 + RSINE1 SINE B4 3 163 -2 9 977 229 336 99 14 chr6 51463743 51463885 -98053152 + MER2 DNA MER2_type 87 240 -105 9 977 640 167 0 81 chr6 51464245 51464369 -98052668 - B1_Mur2 SINE Alu -1 148 35 9 977 652 141 0 13 chr6 51464369 51464520 -98052517 + (TG)n Simple_repeat Simple_repeat 2 150 0 9 977 1232 41 0 0 chr6 51464811 51464958 -98052079 - B1_Mus2 SINE Alu 0 147 1 9 977 375 179 25 25 chr6 51464999 51465079 -98051958 + ID_B1 SINE B4 127 206 -18 9 977 995 134 0 13 chr6 51465128 51465279 -98051758 + B1_Mur4 SINE Alu 1 149 -1 9 977 768 197 7 13 chr6 51465382 51465531 -98051506 - B1_Mur1 SINE Alu 0 149 2 9 977 3692 135 83 52 chr6 51465765 51466419 -98050618 + RLTR33 LTR ERVK 1 674 -4 9 977 548 257 14 0 chr6 51466567 51466707 -98050330 + B1F1 SINE Alu 1 142 -7 9 977 858 300 52 52 chr6 51466718 51466966 -98050071 + B4 SINE B4 2 249 -43 9 977 1141 207 83 4 chr6 51466966 51467218 -98049819 + MT2A LTR ERVL 1 272 -261 9 977 1173 258 41 38 chr6 51467217 51467556 -98049481 + ORR1D1 LTR MaLR 6 345 -29 9 977 2614 165 6 99 chr6 51467560 51468077 -98048960 + RMER19C LTR ERVK 143 611 0 9 977 476 218 17 52 chr6 51468077 51468158 -98048879 + ORR1C2 LTR MaLR 308 384 0 9 977 809 259 43 11 chr6 51468158 51468353 -98048684 + MT2A LTR ERVL 299 601 0 9 977 213 246 48 179 chr6 51468353 51468417 -98048620 + RSINE1 SINE B4 111 163 -2 9 977 432 296 45 81 chr6 51468431 51468652 -98048385 - MIR SINE MIR 0 262 50 9 977 1284 83 35 0 chr6 51468654 51468823 -98048214 + B2_Mm2 SINE B2 2 176 -19 9 977 547 211 196 22 chr6 51469112 51469296 -98047741 - B3 SINE B2 0 216 1 9 977 252 59 0 0 chr6 51469301 51469335 -98047702 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 9 977 1618 22 0 0 chr6 51469335 51469515 -98047522 - B2_Mm1a SINE B2 -12 181 2 9 977 24 0 0 0 chr6 51469519 51469543 -98047494 + AT_rich Low_complexity Low_complexity 1 24 0 9 977 881 140 22 0 chr6 51469543 51469679 -98047358 - B1_Mus2 SINE Alu -8 139 1 9 977 210 175 0 0 chr6 51469695 51469740 -98047297 + T-rich Low_complexity Low_complexity 19 63 0 9 977 1265 34 0 0 chr6 51469740 51469887 -98047150 - B1_Mm SINE Alu 0 147 1 9 977 210 175 0 0 chr6 51469887 51469904 -98047133 + T-rich Low_complexity Low_complexity 2 18 0 9 977 372 43 0 0 chr6 51469946 51469992 -98047045 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 9 977 1145 142 17 0 chr6 51470117 51470293 -98046744 - B2_Mm1t SINE B2 -14 179 1 9 977 4619 69 48 3 chr6 51470313 51470922 -98046115 - L1_Mus2 LINE L1 -4 6562 5927 9 977 2332 83 27 4 chr6 51470922 51471486 -98045551 - MusHAL1 LINE L1 -1303 1409 590 9 977 291 28 0 0 chr6 51471528 51471564 -98045473 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 977 345 214 0 0 chr6 51471595 51471644 -98045393 + ORR1D1 LTR MaLR 10 58 -316 9 977 1243 80 6 0 chr6 51471644 51471806 -98045231 + B2_Mm1t SINE B2 2 164 -29 9 977 279 0 0 0 chr6 51471807 51471838 -98045199 + (CAAT)n Simple_repeat Simple_repeat 3 33 0 9 977 1134 88 0 7 chr6 51471884 51472020 -98045017 + B1_Mus1 SINE Alu 2 137 -11 9 977 189 0 0 0 chr6 51472020 51472041 -98044996 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9 977 1134 88 0 7 chr6 51472041 51472052 -98044985 + B1_Mus1 SINE Alu 138 148 0 9 977 427 49 0 0 chr6 51472063 51472124 -98044913 + B2_Mm1a SINE B2 127 187 -6 9 977 1536 162 86 0 chr6 51472123 51472426 -98044611 + ORR1D1 LTR MaLR 46 374 0 9 977 275 289 56 6 chr6 51472445 51472465 -98044572 - B1F2 SINE Alu -63 87 38 9 977 278 220 0 0 chr6 51472465 51472515 -98044522 - ID_B1 SINE B4 -81 143 94 9 977 891 129 50 0 chr6 51472570 51472710 -98044327 + B1_Mur2 SINE Alu 3 149 0 9 977 678 109 0 0 chr6 51472998 51473090 -98043947 - B1_Mus2 SINE Alu 0 147 56 9 977 343 108 12 119 chr6 51473059 51473143 -98043894 + B1_Mm SINE Alu 72 146 -1 9 977 198 0 0 0 chr6 51473226 51473248 -98043789 + (A)n Simple_repeat Simple_repeat 1 22 0 9 977 645 199 193 0 chr6 51473411 51473582 -98043455 - B3 SINE B2 0 216 13 9 977 203 184 0 20 chr6 51473867 51473917 -98043120 + (CGGGG)n Simple_repeat Simple_repeat 4 52 0 9 977 260 235 29 29 chr6 51474824 51474894 -98042143 - ID4_ SINE ID -13 70 1 1 977 422 262 83 9 chr6 51475672 51475780 -98041257 + PB1D10 SINE Alu 2 117 0 1 977 499 216 39 0 chr6 51475782 51475884 -98041153 - B1_Mus2 SINE Alu -40 107 2 1 977 188 260 74 49 chr6 51475892 51475973 -98041064 - L3 LINE CR1 -959 3530 3448 1 977 451 298 0 21 chr6 51475983 51476127 -98040910 - ID_B1 SINE B4 -1 223 83 1 977 329 266 67 0 chr6 51476222 51476326 -98040711 - ID_B1 SINE B4 -48 176 70 1 977 664 181 63 0 chr6 51476332 51476459 -98040578 + B1_Mus1 SINE Alu 7 141 -7 1 977 285 307 76 49 chr6 51476336 51476480 -98040557 + B4A SINE B4 95 242 -50 1 977 217 214 36 0 chr6 51476503 51476559 -98040478 + ID4 SINE ID 3 60 -23 1 977 200 361 24 32 chr6 51476567 51476690 -98040347 - MIR SINE MIR -62 200 79 1 977 441 313 6 6 chr6 51476931 51477111 -98039926 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 977 226 299 63 43 chr6 51477314 51477457 -98039580 - B4 SINE B4 -3 162 16 1 977 479 309 60 0 chr6 51477538 51477687 -98039350 - RSINE1 SINE B4 -6 159 2 1 977 410 234 93 9 chr6 51477704 51477723 -98039314 - PB1D10 SINE Alu 0 117 5 1 977 441 247 0 0 chr6 51477723 51477808 -98039229 - ID_B1 SINE B4 -54 170 86 1 977 1250 47 0 0 chr6 51478449 51478597 -98038440 - B1_Mus1 SINE Alu 0 148 1 1 977 495 284 49 49 chr6 51479062 51479225 -98037812 + B3A SINE B2 1 163 -35 1 977 214 302 0 0 chr6 51479241 51479304 -98037733 + (CCA)n Simple_repeat Simple_repeat 2 64 0 1 977 223 337 72 0 chr6 51479340 51479423 -98037614 + ID_B1 SINE B4 83 171 -53 1 977 360 258 61 20 chr6 51479352 51479451 -98037586 + PB1D10 SINE Alu 14 116 -1 1 977 1764 147 183 24 chr6 51479996 51480367 -98036670 - RLTR23 LTR ERV1 0 430 1 1 977 357 24 0 0 chr6 51480408 51480450 -98036587 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 977 253 271 11 86 chr6 51480457 51480520 -98036517 - RSINE1 SINE B4 -8 157 102 1 977 2769 140 129 6 chr6 51480520 51481016 -98036021 - RMER4B LTR ERVK 0 585 29 1 977 535 240 0 0 chr6 51481014 51481114 -98035923 - RSINE1 SINE B4 -63 102 3 1 977 193 254 238 0 chr6 51481147 51481210 -98035827 - MER5A DNA MER1_type -50 139 62 1 977 262 290 0 42 chr6 51481285 51481357 -98035680 - ID4_ SINE ID -10 73 5 1 977 1128 209 148 16 chr6 51481603 51481895 -98035142 + ORR1D1 LTR MaLR 1 319 -55 1 977 1143 214 5 9 chr6 51481895 51482112 -98034925 - B3 SINE B2 0 216 1 1 977 654 279 111 66 chr6 51482112 51482157 -98034880 + ORR1D1 LTR MaLR 311 353 -6 1 977 514 271 30 101 chr6 51482182 51482350 -98034687 - RSINE1 SINE B4 -2 163 8 1 977 369 279 61 19 chr6 51483187 51483355 -98033682 - MIRb SINE MIR -22 246 62 1 977 432 277 50 0 chr6 51483648 51483789 -98033248 - B1F SINE Alu 0 149 2 1 977 229 326 12 0 chr6 51484133 51484219 -98032818 - RMER1C Other Other -18 1324 1238 1 977 269 208 0 0 chr6 51484223 51484276 -98032761 - L1MC2 LINE L1 -13 6331 6279 1 977 225 277 81 90 chr6 51484379 51484418 -98032619 + PB1 SINE Alu 1 75 -52 1 977 280 250 0 0 chr6 51484418 51484474 -98032563 + ID_B1 SINE B4 139 194 -30 1 977 225 277 81 90 chr6 51484474 51484490 -98032547 + PB1 SINE Alu 76 110 -17 1 977 1115 149 10 21 chr6 51484738 51484930 -98032107 - B2_Mm2 SINE B2 -5 190 1 1 977 363 247 38 70 chr6 51484962 51485119 -98031918 - RSINE1 SINE B4 -9 156 5 1 977 833 64 0 0 chr6 51485143 51485252 -98031785 - B1_Mm SINE Alu 0 147 39 1 977 5703 102 83 18 chr6 51485314 51486213 -98030824 + RMER17B LTR ERVK 1 958 0 1 977 715 223 0 41 chr6 51486222 51486367 -98030670 - B1_Mur2 SINE Alu -6 143 5 1 977 495 0 0 0 chr6 51487228 51487283 -98029754 + (TTTCC)n Simple_repeat Simple_repeat 3 57 0 1 977 1311 98 0 5 chr6 51487283 51487467 -98029570 - B2_Mm2 SINE B2 -11 184 2 1 977 394 219 45 54 chr6 51487502 51487613 -98029424 - PB1D10 SINE Alu -7 110 1 1 977 747 0 0 0 chr6 51487664 51487747 -98029290 + (TCTCC)n Simple_repeat Simple_repeat 1 83 0 1 977 840 191 0 0 chr6 51487749 51487917 -98029120 + CT-rich Low_complexity Low_complexity 4 171 0 1 977 964 224 19 14 chr6 51487951 51488159 -98028878 - B3 SINE B2 -7 209 1 1 977 504 147 24 1 chr6 51488167 51488251 -98028786 - B1_Mur2 SINE Alu -5 144 60 1 977 189 0 0 0 chr6 51488251 51488272 -98028765 + (CCTG)n Simple_repeat Simple_repeat 4 24 0 1 977 474 184 19 37 chr6 51488272 51488294 -98028743 - B1F2 SINE Alu -90 59 40 1 977 580 287 82 6 chr6 51488319 51488501 -98028536 - ID_B1 SINE B4 -26 198 3 1 977 1004 202 135 153 chr6 51488764 51489065 -98027972 - ORR1C1 LTR MaLR 0 378 71 1 977 1239 47 0 0 chr6 51489065 51489213 -98027824 - B1_Mus1 SINE Alu 0 148 1 1 977 1282 102 16 21 chr6 51489217 51489408 -98027629 - B2_Mm2 SINE B2 -5 190 1 1 977 1004 202 135 153 chr6 51489408 51489486 -98027551 - ORR1C1 LTR MaLR -308 70 3 1 977 2266 98 9 0 chr6 51489703 51490021 -98027016 - ORR1A4 LTR MaLR -8 321 1 1 977 332 292 81 34 chr6 51490161 51490310 -98026727 - L2a LINE L2 -5 3421 3266 1 977 349 336 132 10 chr6 51490914 51491173 -98025864 + L1M2 LINE L1 5037 5321 -825 1 977 283 255 44 6 chr6 51491174 51491270 -98025767 + PB1D10 SINE Alu 1 99 -21 1 977 499 223 68 0 chr6 51491816 51491919 -98025118 - RSINE1 SINE B4 -22 143 34 1 977 189 0 0 0 chr6 51491968 51491989 -98025048 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 977 512 286 123 7 chr6 51491996 51492151 -98024886 - B3A SINE B2 -25 173 1 1 977 224 346 65 0 chr6 51492450 51492557 -98024480 - ID_B1 SINE B4 -33 191 78 1 977 253 324 0 14 chr6 51492633 51492705 -98024332 + RMER15 LTR ERVL 376 446 -129 1 977 898 146 7 27 chr6 51492851 51492999 -98024038 - B1_Mur1 SINE Alu -2 147 3 1 977 928 275 96 127 chr6 51493082 51493671 -98023366 - MTE-int LTR MaLR -305 1275 233 1 977 252 213 98 0 chr6 51493655 51493716 -98023321 - MTE2a LTR MaLR -82 297 231 1 977 531 252 35 28 chr6 51493706 51493849 -98023188 - RSINE1 SINE B4 -19 146 3 1 977 613 266 87 23 chr6 51494904 51495077 -98021960 - B3A SINE B2 -6 192 9 1 977 303 106 45 0 chr6 51495078 51495144 -98021893 + CT-rich Low_complexity Low_complexity 2 70 0 1 977 417 20 0 0 chr6 51495169 51495219 -98021818 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 977 215 140 20 0 chr6 51495219 51495269 -98021768 + GA-rich Low_complexity Low_complexity 2 52 0 1 977 243 265 72 0 chr6 51495302 51495385 -98021652 - B3A SINE B2 -82 116 28 1 977 557 260 0 0 chr6 51495685 51495808 -98021229 + B1F2 SINE Alu 1 123 -26 1 977 490 214 100 36 chr6 51495801 51495975 -98021062 - B3A SINE B2 -34 182 1 1 977 180 360 73 20 chr6 51496445 51496595 -98020442 - MIR SINE MIR -25 237 80 1 977 699 205 0 16 chr6 51497019 51497148 -98019889 + B1_Mm SINE Alu 2 128 -19 1 977 180 0 0 0 chr6 51497153 51497173 -98019864 + (CAA)n Simple_repeat Simple_repeat 1 20 0 1 977 294 318 137 72 chr6 51497204 51497343 -98019694 - RSINE1 SINE B4 -15 150 3 1 977 959 224 29 0 chr6 51497671 51497876 -98019161 - B3 SINE B2 -3 213 3 1 977 1034 61 69 0 chr6 51497917 51498048 -98018989 + B1_Mus2 SINE Alu 1 140 -7 1 977 279 0 0 0 chr6 51498050 51498081 -98018956 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 977 707 120 0 8 chr6 51498466 51498584 -98018453 + (TTCC)n Simple_repeat Simple_repeat 3 119 0 1 977 623 205 0 59 chr6 51498684 51498786 -98018251 + B1_Mur4 SINE Alu 1 95 -55 1 977 548 14 14 0 chr6 51498786 51498855 -98018182 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 977 623 205 0 59 chr6 51498855 51498887 -98018150 + B1_Mur4 SINE Alu 96 127 -23 1 977 278 214 70 23 chr6 51499684 51499770 -98017267 - L1MB8 LINE L1 -1 6177 6088 1 977 185 0 40 0 chr6 51499798 51499823 -98017214 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1 977 1548 40 0 0 chr6 51499823 51500000 -98017037 - B2_Mm1a SINE B2 -16 177 1 1 977 798 274 92 65 chr6 51500002 51500535 -98016502 - L1MB8 LINE L1 -108 6070 5539 1 977 363 23 0 0 chr6 51500661 51500705 -98016332 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 977 243 236 0 0 chr6 51500724 51500779 -98016258 - L1MB8 LINE L1 -855 5291 5237 1 977 258 242 117 32 chr6 51500924 51501018 -98016019 - PB1 SINE Alu -3 124 23 3 977 335 215 15 0 chr6 51501160 51501225 -98015812 - ID2 SINE ID -13 70 5 4 977 1482 181 73 0 chr6 51501362 51501650 -98015387 - MTC LTR MaLR -112 309 1 5 977 446 306 19 57 chr6 51501651 51501862 -98015175 - L1MB8 LINE L1 -1282 4864 4662 1 977 551 310 26 0 chr6 51501901 51502017 -98015020 - B1F SINE Alu -30 119 1 6 977 267 225 189 40 chr6 51502148 51502222 -98014815 - PB1D10 SINE Alu -38 111 27 7 977 23 33 0 0 chr6 51502273 51502303 -98014734 + AT_rich Low_complexity Low_complexity 1 30 0 8 977 1134 62 0 40 chr6 51502357 51502509 -98014528 - B1_Mm SINE Alu 0 147 2 9 977 381 245 36 36 chr6 51502708 51502818 -98014219 - PB1D7 SINE Alu -7 113 4 1 977 1269 34 0 0 chr6 51502850 51502996 -98014041 + B1_Mm SINE Alu 1 146 -1 1 977 207 146 42 0 chr6 51502997 51503045 -98013992 + A-rich Low_complexity Low_complexity 4 53 0 1 977 781 201 209 10 chr6 51503532 51503806 -98013231 + ORR1D1 LTR MaLR 1 329 -55 1 977 261 167 0 53 chr6 51503808 51503884 -98013153 + CT-rich Low_complexity Low_complexity 2 73 0 1 977 352 157 392 0 chr6 51503892 51503994 -98013043 - B1_Mus2 SINE Alu 0 147 6 1 977 373 131 33 0 chr6 51504003 51504064 -98012973 + ORR1D1 LTR MaLR 321 383 -1 1 977 1241 111 26 0 chr6 51504648 51504837 -98012200 + B2_Mm2 SINE B2 1 194 -1 1 977 255 204 0 0 chr6 51504840 51504894 -98012143 + A-rich Low_complexity Low_complexity 2 55 0 1 977 240 284 75 52 chr6 51504963 51505097 -98011940 - RSINE1 SINE B4 -1 164 28 1 977 550 179 125 0 chr6 51505123 51505235 -98011802 - B3 SINE B2 -28 188 63 1 977 718 193 0 94 chr6 51505267 51505298 -98011739 - B1_Mus2 SINE Alu 0 147 122 2 977 3628 35 28 2 chr6 51505298 51505723 -98011314 - RLTR10C LTR ERVK 0 436 1 2 977 718 193 0 94 chr6 51505723 51505851 -98011186 - B1_Mus2 SINE Alu -26 121 3 2 977 352 304 45 67 chr6 51505851 51505885 -98011152 - B4 SINE B4 -199 93 63 2 977 417 245 20 41 chr6 51506097 51506195 -98010842 - PB1D7 SINE Alu 0 120 25 2 977 252 306 26 53 chr6 51506129 51506243 -98010794 - MT2B2 LTR ERVL -337 247 137 2 977 1125 154 24 24 chr6 51506330 51506536 -98010501 - B3 SINE B2 -10 206 1 2 977 313 299 82 49 chr6 51506645 51506828 -98010209 - L1MB2 LINE L1 -3 6168 5980 2 977 1123 287 21 10 chr6 51506873 51507162 -98009875 + B4A SINE B4 1 292 0 2 977 279 0 0 0 chr6 51507173 51507204 -98009833 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 977 733 244 118 16 chr6 51507205 51507418 -98009619 - L1MB2 LINE L1 -240 5931 5690 2 977 1839 128 70 32 chr6 51507418 51507732 -98009305 + ORR1A3 LTR MaLR 1 326 0 2 977 733 244 118 16 chr6 51507732 51507772 -98009265 - L1MB2 LINE L1 -482 5689 5652 2 977 1023 110 0 14 chr6 51507778 51507926 -98009111 - B1_Mus1 SINE Alu 0 148 3 3 977 976 222 0 32 chr6 51507964 51508183 -98008854 + B3 SINE B2 5 216 0 3 977 225 149 64 0 chr6 51508191 51508238 -98008799 - L1MB2 LINE L1 -535 5648 5599 2 977 309 109 0 0 chr6 51508242 51508288 -98008749 + (CAT)n Simple_repeat Simple_repeat 2 47 0 3 977 230 321 0 0 chr6 51508315 51508371 -98008666 + ID4 SINE ID 22 77 -6 3 977 1286 104 11 6 chr6 51508862 51509045 -98007992 - B2_Mm2 SINE B2 -5 190 7 3 977 183 74 0 0 chr6 51509045 51509063 -98007974 + (T)n Simple_repeat Simple_repeat 1 18 0 3 977 898 112 26 77 chr6 51509063 51509218 -98007819 - B1_Mm SINE Alu 0 147 1 3 977 183 74 0 0 chr6 51509218 51509226 -98007811 + (T)n Simple_repeat Simple_repeat 1 8 0 3 977 1029 149 0 0 chr6 51509347 51509522 -98007515 + (TC)n Simple_repeat Simple_repeat 2 176 0 3 977 700 250 7 0 chr6 51510180 51510320 -98006717 - B4 SINE B4 -144 148 8 3 977 318 256 145 64 chr6 51510782 51511052 -98005985 - L1MB2 LINE L1 -24 6144 5843 4 122 332 276 35 49 chr6 51511285 51511423 -98005614 - MLT1C LTR MaLR -30 475 299 4 978 611 194 0 0 chr6 51511424 51511527 -98005510 - B1F SINE Alu -45 104 2 4 978 293 346 70 6 chr6 51511527 51511581 -98005456 - B4 SINE B4 -99 193 27 4 978 320 322 74 0 chr6 51511557 51511678 -98005359 + ID_B1 SINE B4 83 212 -12 4 978 1449 79 11 0 chr6 51512557 51512747 -98004290 - B2_Mm1t SINE B2 0 193 2 4 978 1403 84 5 5 chr6 51512788 51512980 -98004057 - B2_Mm2 SINE B2 -2 193 2 4 978 415 292 64 21 chr6 51513062 51513202 -98003835 - MER2 DNA MER2_type 0 345 200 4 978 467 280 80 0 chr6 51513206 51513331 -98003706 - ID_B1 SINE B4 -6 218 84 4 978 511 172 108 15 chr6 51513328 51513458 -98003579 - MER2 DNA MER2_type -117 228 87 4 978 675 221 0 0 chr6 51513517 51513745 -98003292 + (TG)n Simple_repeat Simple_repeat 1 228 0 4 978 469 220 10 10 chr6 51513769 51513870 -98003167 - B4 SINE B4 0 292 192 5 978 279 0 0 0 chr6 51514087 51514118 -98002919 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 5 978 978 190 50 41 chr6 51514458 51514677 -98002360 + URR1B DNA MER1_type 5 225 0 5 978 652 206 10 2 chr6 51514695 51514814 -98002223 - B1_Mur1 SINE Alu -22 126 9 5 978 258 301 88 81 chr6 51514713 51514861 -98002176 - MT2B2 LTR ERVL -321 263 115 5 978 409 87 14 68 chr6 51514957 51515031 -98002006 - B1_Mur4 SINE Alu -2 148 79 5 978 900 265 10 39 chr6 51515173 51515381 -98001656 - B4A SINE B4 -85 207 6 5 978 1457 234 17 99 chr6 51515415 51515827 -98001210 - MTE2b LTR MaLR -1 378 1 5 978 731 144 17 0 chr6 51516433 51516551 -98000486 + B1_Mus1 SINE Alu 2 121 -27 5 978 240 288 0 33 chr6 51516781 51516842 -98000195 - MER117 DNA MER1_type -138 59 1 5 978 748 133 12 169 chr6 51517637 51517809 -97999228 + URR1A DNA MER1_type 71 215 -11 5 978 573 236 6 92 chr6 51517913 51518076 -97998961 - B1_Mur1 SINE Alu 0 149 1 6 978 847 154 29 0 chr6 51518312 51518448 -97998589 + B1_Mur4 SINE Alu 2 141 -9 6 978 216 158 0 0 chr6 51518477 51518515 -97998522 + A-rich Low_complexity Low_complexity 1 38 0 6 978 582 268 0 7 chr6 51518539 51518678 -97998359 - B1F SINE Alu -9 140 3 6 978 976 211 5 40 chr6 51518990 51519212 -97997825 + B3 SINE B2 3 216 0 6 978 771 301 60 3 chr6 51519654 51519954 -97997083 + L1MC3 LINE L1 7205 7521 -264 6 978 263 301 21 31 chr6 51520006 51520102 -97996935 + MIRb SINE MIR 27 121 -147 6 978 8372 48 0 8 chr6 51520112 51521445 -97995592 - L1Md_F2 LINE L1 -12 6570 5257 6 978 1606 47 0 15 chr6 51521445 51521640 -97995397 - B2_Mm1t SINE B2 0 193 2 6 978 6679 62 1 23 chr6 51521640 51521866 -97995171 - L1Md_F2 LINE L1 -627 5256 5032 6 978 760 273 104 50 chr6 51522383 51522680 -97994357 - MamRep434 DNA TcMar -3 423 111 6 978 626 75 11 0 chr6 51523511 51523604 -97993433 + (GGAA)n Simple_repeat Simple_repeat 1 94 0 7 978 380 203 97 27 chr6 51523620 51523725 -97993312 - PB1D9 SINE Alu -28 121 15 7 978 226 327 0 0 chr6 51523835 51523887 -97993150 + C-rich Low_complexity Low_complexity 4 55 0 7 978 503 194 0 77 chr6 51523887 51524004 -97993033 - B1_Mus1 SINE Alu 0 148 41 7 978 423 237 67 8 chr6 51524000 51524119 -97992918 - B1F1 SINE Alu -23 126 1 7 978 324 274 22 75 chr6 51524010 51524144 -97992893 - ID_B1 SINE B4 -32 192 66 7 978 455 233 66 16 chr6 51524318 51524440 -97992597 + ORSL DNA Tip100 1 128 -147 7 978 527 92 183 0 chr6 51524678 51524782 -97992255 - B1_Mus1 SINE Alu -1 147 34 7 978 414 216 112 10 chr6 51525015 51525113 -97991924 - B3 SINE B2 -7 209 102 7 978 344 258 8 38 chr6 51525205 51525342 -97991695 - PB1D7 SINE Alu -5 144 17 7 978 25 31 0 0 chr6 51526169 51526201 -97990836 + AT_rich Low_complexity Low_complexity 1 32 0 8 978 396 0 0 0 chr6 51526300 51526344 -97990693 + (TATG)n Simple_repeat Simple_repeat 1 44 0 8 978 967 107 17 0 chr6 51526345 51526497 -97990540 - B2_Mm2 SINE B2 -47 169 2 8 978 897 173 39 15 chr6 51527285 51527490 -97989547 + B3 SINE B2 2 211 -5 8 978 719 169 15 44 chr6 51527523 51527659 -97989378 + ID_B1 SINE B4 82 213 -11 8 978 24 32 0 0 chr6 51527737 51527768 -97989269 + AT_rich Low_complexity Low_complexity 1 31 0 8 978 483 232 63 8 chr6 51528867 51528993 -97988044 - B1F SINE Alu -15 134 2 8 978 382 221 57 9 chr6 51529417 51529522 -97987515 - PB1D10 SINE Alu -3 114 5 8 978 382 223 0 24 chr6 51530627 51530735 -97986302 + B1F SINE Alu 46 148 -2 8 978 610 316 57 22 chr6 51531098 51531328 -97985709 + MIR SINE MIR 25 262 0 8 978 205 143 41 0 chr6 51531841 51531890 -97985147 + (TA)n Simple_repeat Simple_repeat 2 52 0 9 978 940 161 193 6 chr6 51531906 51532087 -97984950 - B3 SINE B2 -1 215 1 9 978 327 236 42 83 chr6 51532374 51532494 -97984543 - B1F2 SINE Alu -34 115 1 9 978 336 214 231 10 chr6 51532391 51532495 -97984542 - ID_B1 SINE B4 -17 207 81 9 978 927 230 28 19 chr6 51532980 51533193 -97983844 + B3 SINE B2 1 215 -1 9 978 535 276 0 16 chr6 51534482 51534607 -97982430 - ID_B1 SINE B4 -20 204 82 9 978 397 129 21 0 chr6 51534638 51534731 -97982306 + (CA)n Simple_repeat Simple_repeat 2 96 0 9 978 297 0 0 0 chr6 51535309 51535342 -97981695 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 9 978 722 202 0 0 chr6 51535347 51535476 -97981561 - B1_Mur2 SINE Alu -19 130 2 9 978 21 36 0 0 chr6 51535712 51535740 -97981297 + AT_rich Low_complexity Low_complexity 1 28 0 9 978 409 232 70 10 chr6 51535756 51535856 -97981181 - PB1D7 SINE Alu -6 114 9 1 978 289 273 39 13 chr6 51535786 51535864 -97981173 - ID_B1 SINE B4 -64 160 81 1 978 21 0 0 0 chr6 51535872 51535893 -97981144 + AT_rich Low_complexity Low_complexity 1 21 0 1 978 264 122 0 0 chr6 51538167 51538208 -97978829 + (T)n Simple_repeat Simple_repeat 1 41 0 1 978 297 0 0 0 chr6 51540744 51540777 -97976260 + (T)n Simple_repeat Simple_repeat 1 33 0 1 978 22 0 0 0 chr6 51541670 51541692 -97975345 + AT_rich Low_complexity Low_complexity 1 22 0 1 978 219 69 0 0 chr6 51543169 51543198 -97973839 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1 978 1068 77 153 6 chr6 51544361 51544531 -97972506 + B2_Mm2 SINE B2 1 195 0 1 978 470 234 103 0 chr6 51546233 51546340 -97970697 + ID_B1 SINE B4 94 211 -13 1 978 1463 37 15 68 chr6 51546873 51547078 -97969959 + B2_Mm2 SINE B2 2 195 0 1 978 685 95 45 54 chr6 51547554 51547665 -97969372 + B1_Mur4 SINE Alu 41 150 0 1 978 194 180 16 0 chr6 51547821 51547882 -97969155 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 978 461 186 8 0 chr6 51547898 51548027 -97969010 + (CA)n Simple_repeat Simple_repeat 2 131 0 1 978 273 128 0 0 chr6 51548255 51548302 -97968735 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 978 580 273 11 85 chr6 51548833 51549021 -97968016 - B3A SINE B2 0 198 25 1 978 513 44 0 0 chr6 51549129 51549197 -97967840 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 978 245 180 60 0 chr6 51549243 51549293 -97967744 + CT-rich Low_complexity Low_complexity 2 54 0 1 978 826 110 15 45 chr6 51549293 51549426 -97967611 - B1_Mus1 SINE Alu -1 147 19 1 978 1091 83 7 0 chr6 51549443 51549588 -97967449 - B1_Mus2 SINE Alu 0 147 2 1 978 235 167 0 0 chr6 51549588 51549624 -97967413 - B2_Mm2 SINE B2 -155 40 5 1 978 799 194 28 0 chr6 51549644 51549788 -97967249 - B1_Mur1 SINE Alu -1 148 1 1 978 385 279 22 58 chr6 51550091 51550228 -97966809 - B1F SINE Alu -6 143 12 1 978 243 294 49 128 chr6 51550228 51550294 -97966743 - ID_B1 SINE B4 -6 218 32 1 978 329 215 23 81 chr6 51550249 51550335 -97966702 + B1F SINE Alu 68 148 -1 1 978 215 310 0 17 chr6 51550375 51550434 -97966603 + RSINE1 SINE B4 29 86 -79 1 978 367 226 0 106 chr6 51550577 51550671 -97966366 + RSINE1 SINE B4 82 165 0 1 978 1420 45 78 0 chr6 51551098 51551116 -97965921 - B2_Mm1t SINE B2 0 193 176 1 978 423 0 0 0 chr6 51551116 51551163 -97965874 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 978 1420 45 78 0 chr6 51551163 51551323 -97965714 - B2_Mm1t SINE B2 -18 175 2 1 978 633 14 0 0 chr6 51551443 51551517 -97965520 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 1 978 420 273 10 39 chr6 51551517 51551610 -97965427 - RSINE1 SINE B4 -9 156 66 1 978 379 235 116 10 chr6 51551773 51551895 -97965142 - MLT1J2 LTR MaLR -299 213 35 1 978 267 224 12 106 chr6 51551921 51551988 -97965049 - B4 SINE B4 0 292 231 1 978 1012 134 111 0 chr6 51551988 51552160 -97964877 - B2_Mm2 SINE B2 -4 191 1 1 978 267 224 12 106 chr6 51552160 51552177 -97964860 - B4 SINE B4 -62 230 216 1 978 870 149 0 0 chr6 51552182 51552330 -97964707 + (TCC)n Simple_repeat Simple_repeat 3 150 0 1 978 219 167 0 0 chr6 51552416 51552458 -97964579 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1 978 287 241 0 0 chr6 51552461 51552515 -97964522 - RSINE1 SINE B4 0 165 112 1 978 710 328 68 42 chr6 51552533 51552797 -97964240 - B4A SINE B4 -21 271 1 1 978 633 242 92 46 chr6 51552797 51552974 -97964063 - B4A SINE B4 -72 220 35 1 978 567 292 60 32 chr6 51553624 51553840 -97963197 - RCHARR1 DNA MER1_type -750 224 3 1 978 312 294 117 16 chr6 51553883 51554011 -97963026 - MLT1A0 LTR MaLR -223 142 2 1 978 284 337 35 0 chr6 51554047 51554133 -97962904 + MIRb SINE MIR 57 145 -123 1 978 342 237 112 10 chr6 51555573 51555671 -97961366 - PB1D10 SINE Alu -9 108 1 1 978 213 39 0 0 chr6 51555697 51555723 -97961314 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 1 978 356 257 93 86 chr6 51555742 51555904 -97961133 - RSINE1 SINE B4 0 165 3 1 978 544 128 21 48 chr6 51558113 51558217 -97958820 - PB1D10 SINE Alu -2 115 14 1 978 187 253 63 51 chr6 51559192 51559271 -97957766 - L2 LINE L2 -1112 2307 2228 1 978 375 188 25 0 chr6 51560217 51560297 -97956740 + ID4 SINE ID 2 83 0 1 978 324 0 0 0 chr6 51560886 51560922 -97956115 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 978 672 13 0 0 chr6 51561437 51561514 -97955523 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 1 978 809 141 7 43 chr6 51561514 51561655 -97955382 - B1_Mur3 SINE Alu -13 136 1 1 978 337 321 56 100 chr6 51561655 51561706 -97955331 - B4 SINE B4 -202 90 48 1 978 303 28 0 0 chr6 51561777 51561813 -97955224 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 978 23 78 0 0 chr6 51562701 51562752 -97954285 + GC_rich Low_complexity Low_complexity 1 51 0 1 978 21 0 0 0 chr6 51562884 51562905 -97954132 + GC_rich Low_complexity Low_complexity 1 21 0 1 978 488 305 28 28 chr6 51563456 51563672 -97953365 + MER33 DNA MER1_type 109 324 0 1 978 1342 82 16 21 chr6 51564462 51564650 -97952387 + B2_Mm2 SINE B2 1 187 -8 1 978 1534 222 73 27 chr6 51566098 51566698 -97950339 + ORR1D1 LTR MaLR 1 374 0 1 978 279 325 50 58 chr6 51567190 51567311 -97949726 + B4 SINE B4 2 121 -171 1 978 237 241 0 33 chr6 51567364 51567424 -97949613 + RSINE1 SINE B4 108 165 0 1 978 347 217 129 11 chr6 51567501 51567594 -97949443 - PB1D10 SINE Alu -13 104 1 1 978 570 192 10 0 chr6 51568258 51568357 -97948680 + PB1D9 SINE Alu 2 101 -19 1 978 274 279 79 26 chr6 51568500 51568614 -97948423 + PB1 SINE Alu 6 125 -2 1 978 303 392 47 27 chr6 51568773 51569069 -97947968 - L1M5 LINE L1 -1006 5140 4839 1 978 504 324 7 42 chr6 51569383 51569525 -97947512 - ID_B1 SINE B4 -10 214 78 1 978 632 218 58 96 chr6 51570811 51571019 -97946018 - RMER10B LTR ERVL -4 394 195 1 978 1341 147 27 19 chr6 51571028 51571291 -97945746 - RMER10B LTR ERVL -133 265 1 1 978 902 151 7 21 chr6 51571592 51571734 -97945303 - B1_Mur3 SINE Alu -9 140 1 1 978 1797 87 63 104 chr6 51571765 51572100 -97944937 - ORR1A4 LTR MaLR -8 321 1 1 978 1827 244 146 26 chr6 51572160 51572635 -97944402 + Lx8 LINE L1 6780 7330 -143 1 978 2232 119 94 3 chr6 51572635 51572996 -97944041 + ORR1B1 LTR MaLR 1 394 0 1 978 1827 244 146 26 chr6 51572996 51573138 -97943899 + Lx8 LINE L1 7331 7471 -2 1 978 319 156 12 83 chr6 51573073 51573157 -97943880 + RMER1C Other Other 1260 1337 -5 1 978 1660 143 99 24 chr6 51573277 51573571 -97943466 - RLTR41 LTR ERV1 0 446 131 1 978 427 191 0 43 chr6 51573587 51573680 -97943357 - RLTR41 LTR ERV1 -269 177 89 1 978 3573 23 2 0 chr6 51573680 51574075 -97942962 - MTA_Mm LTR MaLR 0 396 1 1 978 8321 33 19 2 chr6 51574075 51575112 -97941925 - MTA_Mm-int LTR MaLR 0 1098 44 1 978 6663 18 0 1 chr6 51575112 51575854 -97941183 - MERVL-int LTR ERVL -4744 741 1 1 978 4321 25 12 0 chr6 51575854 51576341 -97940696 - MT2_Mm LTR ERVL 0 493 1 1 978 674 87 22 0 chr6 51576341 51576433 -97940604 - RLTR41 LTR ERV1 -352 94 1 1 978 596 215 0 0 chr6 51576452 51576559 -97940478 + MTD LTR MaLR 1 107 -312 1 978 3367 160 221 16 chr6 51576560 51577263 -97939774 - RMER19B LTR ERVK 0 902 56 1 978 331 122 0 0 chr6 51577264 51577313 -97939724 - RMER19B LTR ERVK -796 106 58 1 978 1067 233 64 57 chr6 51577311 51577625 -97939412 + MTD LTR MaLR 103 418 -1 1 978 288 291 115 50 chr6 51577631 51577848 -97939189 + MLT1A LTR MaLR 108 349 -41 1 978 351 0 0 0 chr6 51577915 51577954 -97939083 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1 978 10410 96 5 17 chr6 51577954 51579424 -97937613 - Lx4A LINE L1 -10 7048 5596 1 978 449 217 0 52 chr6 51579551 51579648 -97937389 + RLTR20D LTR ERVK 1 92 -476 1 978 696 172 0 0 chr6 51580730 51580852 -97936185 + B1_Mur3 SINE Alu 6 127 -22 1 978 339 119 0 0 chr6 51580853 51580920 -97936117 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 1 978 197 319 72 0 chr6 51581066 51581135 -97935902 + L2a LINE L2 3302 3375 -51 1 978 283 292 94 68 chr6 51582278 51582469 -97934568 + MamRep434 DNA TcMar 227 422 -4 1 978 320 278 111 70 chr6 51583635 51583879 -97933158 + LTR85b LTR Gypsy? 11 264 -438 1 978 528 297 104 5 chr6 51584003 51584060 -97932977 + LTR85b LTR Gypsy? 573 641 -143 1 978 429 20 0 0 chr6 51584060 51584110 -97932927 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 978 528 297 104 5 chr6 51584110 51584245 -97932792 + LTR85b LTR Gypsy? 642 783 -1 1 978 221 30 61 0 chr6 51586052 51586085 -97930952 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 1 978 203 200 13 67 chr6 51586740 51586815 -97930222 + A-rich Low_complexity Low_complexity 1 71 0 1 978 262 45 57 57 chr6 51586818 51586888 -97930149 + (CAAAC)n Simple_repeat Simple_repeat 5 74 0 1 978 208 85 0 78 chr6 51586895 51586946 -97930091 + A-rich Low_complexity Low_complexity 3 49 0 1 978 313 285 169 8 chr6 51586951 51587075 -97929962 + L1MC4a LINE L1 7305 7448 -434 1 978 1209 78 0 0 chr6 51587081 51587260 -97929777 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 978 433 281 173 33 chr6 51587269 51587541 -97929496 + L1MC4a LINE L1 7564 7873 -9 1 978 308 192 51 64 chr6 51587518 51587596 -97929441 + HAL1-3A_ME LINE L1 923 999 -1859 1 978 317 216 119 40 chr6 51588034 51588135 -97928902 - MLT1H2 LTR MaLR -312 177 69 1 978 199 114 22 22 chr6 51588204 51588249 -97928788 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 978 288 313 46 3 chr6 51588355 51588462 -97928575 - B4 SINE B4 -182 110 1 1 978 543 221 26 9 chr6 51588465 51588579 -97928458 - ID_B1 SINE B4 -3 221 106 1 978 261 322 82 33 chr6 51588479 51588601 -97928436 - MT2B LTR ERVL -319 282 155 1 978 1544 166 94 55 chr6 51588901 51589075 -97927962 - ORR1C1 LTR MaLR 0 378 175 1 978 507 56 0 0 chr6 51589075 51589146 -97927891 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 1 978 1544 166 94 55 chr6 51589146 51589334 -97927703 - ORR1C1 LTR MaLR -204 174 3 1 978 386 272 8 34 chr6 51589428 51589546 -97927491 + PB1D10 SINE Alu 1 115 -2 1 978 278 232 45 43 chr6 51589561 51589661 -97927376 + ID4 SINE ID 16 122 -30 1 978 262 259 0 65 chr6 51589763 51589825 -97927212 - ID_B1 SINE B4 -153 139 82 2 978 990 259 86 16 chr6 51589949 51590204 -97926833 + B4A SINE B4 15 287 -5 2 978 393 22 0 0 chr6 51590220 51590266 -97926771 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 978 525 331 7 0 chr6 51590572 51590711 -97926326 + ID_B1 SINE B4 80 219 -5 2 978 695 228 28 0 chr6 51591001 51591146 -97925891 + B1_Mur1 SINE Alu 1 149 0 2 978 219 69 0 0 chr6 51593201 51593230 -97923807 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 2 978 230 222 0 0 chr6 51593271 51593316 -97923721 - PB1D7 SINE Alu -2 118 74 2 978 1609 133 46 83 chr6 51593521 51593916 -97923121 + L1_Mur3 LINE L1 1270 1649 -4231 2 978 12678 147 25 33 chr6 51593902 51595350 -97921687 + L1_Mur3 LINE L1 3563 5020 -860 2 978 2180 43 0 0 chr6 51595350 51595607 -97921430 + L1Md_T LINE L1 6326 6582 0 2 978 12678 147 25 33 chr6 51595607 51596449 -97920588 + L1_Mur3 LINE L1 5021 5834 -46 2 978 634 244 7 0 chr6 51596451 51596586 -97920451 + Lx7 LINE L1 7219 7354 -342 2 978 230 0 33 0 chr6 51596595 51596625 -97920412 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 978 1200 29 0 0 chr6 51596625 51596763 -97920274 - B1_Mus2 SINE Alu -9 138 1 2 978 246 95 0 0 chr6 51596787 51596829 -97920208 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 2 978 1269 28 0 0 chr6 51596831 51596975 -97920062 - B1_Mm SINE Alu -3 144 1 2 978 1108 192 115 62 chr6 51596979 51597317 -97919720 + Lx7 LINE L1 7341 7696 0 2 978 376 174 0 21 chr6 51597477 51597571 -97919466 + CT-rich Low_complexity Low_complexity 1 92 0 2 978 563 262 32 69 chr6 51597626 51597843 -97919194 + MER3 DNA MER1_type 1 209 0 2 978 789 41 0 0 chr6 51598133 51598230 -97918807 - B1_Mm SINE Alu 0 147 51 2 978 351 0 0 0 chr6 51598382 51598421 -97918616 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 978 258 32 0 0 chr6 51599208 51599239 -97917798 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 978 283 204 0 0 chr6 51600531 51600580 -97916457 - B1F SINE Alu -1 148 100 2 978 260 328 24 40 chr6 51600599 51600723 -97916314 + YREP_Mm Unknown Unknown 175 296 -1516 2 978 691 186 18 0 chr6 51600612 51600725 -97916312 - ID_B1 SINE B4 -10 214 100 2 978 3138 75 2 2 chr6 51600993 51601410 -97915627 + L1_Mus4 LINE L1 6220 6636 0 2 978 237 256 364 28 chr6 51602436 51602566 -97914471 + B4A SINE B4 43 216 -76 2 978 396 7 0 136 chr6 51602575 51602752 -97914285 + (TATATG)n Simple_repeat Simple_repeat 1 153 0 2 978 338 0 0 135 chr6 51602783 51602924 -97914113 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 2 978 980 76 13 82 chr6 51603436 51603594 -97913443 + B1_Mm SINE Alu 1 147 0 2 978 198 0 0 0 chr6 51603594 51603616 -97913421 + (A)n Simple_repeat Simple_repeat 1 22 0 2 978 225 94 0 0 chr6 51603626 51603658 -97913379 + B3A SINE B2 1 32 -166 2 978 395 200 13 13 chr6 51603652 51603728 -97913309 - ORR1E LTR MaLR -283 76 1 2 978 842 203 26 31 chr6 51605060 51605253 -97911784 + B3 SINE B2 1 192 -24 2 978 218 163 41 0 chr6 51605259 51605308 -97911729 + G-rich Low_complexity Low_complexity 4 54 0 2 978 189 0 0 0 chr6 51609524 51609545 -97907492 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 2 978 632 57 38 0 chr6 51609682 51609788 -97907249 + (CCTG)n Simple_repeat Simple_repeat 1 110 0 2 978 495 130 0 0 chr6 51609814 51609914 -97907123 + (TC)n Simple_repeat Simple_repeat 1 100 0 2 978 314 286 141 9 chr6 51610402 51610562 -97906475 + L2b LINE L2 3002 3184 -203 2 978 368 254 16 66 chr6 51610675 51610797 -97906240 + PB1D10 SINE Alu 1 116 -1 2 978 675 25 0 0 chr6 51611078 51611159 -97905878 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 978 728 207 8 0 chr6 51611159 51611280 -97905757 - RSINE1 SINE B4 -41 124 3 2 978 249 200 0 22 chr6 51611336 51611382 -97905655 - MIRm SINE MIR -110 166 122 2 978 197 247 161 49 chr6 51611351 51611432 -97905605 - MIRc SINE MIR -119 149 60 2 978 556 324 28 12 chr6 51612588 51612835 -97904202 - L1MB5 LINE L1 -71 6103 5853 2 978 627 226 7 0 chr6 51612861 51613007 -97904030 - L1MB5 LINE L1 -423 5751 5605 2 978 297 146 0 0 chr6 51613007 51613055 -97903982 + MTD-int LTR MaLR 1209 1256 -2 2 978 1837 213 57 3 chr6 51613070 51613456 -97903581 + MTD LTR MaLR 13 419 0 2 978 266 314 73 45 chr6 51614952 51615062 -97901975 + MLT2B2 LTR ERVL 1 113 -402 2 978 279 262 99 36 chr6 51615129 51615240 -97901797 + ORR1E LTR MaLR 231 348 -11 2 978 183 42 0 0 chr6 51615707 51615731 -97901306 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2 978 261 284 174 30 chr6 51616122 51616289 -97900748 + ORR1E LTR MaLR 4 194 -165 2 978 1815 215 50 8 chr6 51616462 51616860 -97900177 - MTD LTR MaLR -2 417 3 2 978 299 300 53 26 chr6 51617152 51617265 -97899772 + PB1D10 SINE Alu 2 117 0 2 978 251 297 31 0 chr6 51617567 51617631 -97899406 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 2 978 301 139 0 0 chr6 51617814 51617857 -97899180 - B4A SINE B4 -225 67 25 2 978 1028 194 8 63 chr6 51618131 51618368 -97898669 - URR1A DNA MER1_type -2 224 1 2 978 240 354 31 0 chr6 51620107 51620234 -97896803 - LTR16A1 LTR ERVL -309 147 17 2 978 241 361 82 0 chr6 51620271 51620368 -97896669 + L2a LINE L2 3322 3426 0 2 978 621 221 138 26 chr6 51620667 51620862 -97896175 + MTE2b LTR MaLR 151 367 -12 2 978 187 286 58 74 chr6 51621145 51621266 -97895771 - MIR SINE MIR -64 144 26 2 978 340 269 118 0 chr6 51621517 51621610 -97895427 + PB1D10 SINE Alu 13 116 -1 2 978 594 109 31 15 chr6 51621837 51621967 -97895070 + CT-rich Low_complexity Low_complexity 3 134 0 2 978 351 0 0 0 chr6 51621978 51622017 -97895020 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2 978 894 176 7 7 chr6 51622017 51622155 -97894882 - B1_Mur4 SINE Alu -11 139 1 2 978 1193 160 14 33 chr6 51622252 51622465 -97894572 + B3 SINE B2 8 216 0 2 978 216 303 20 60 chr6 51623482 51623627 -97893410 - L3b LINE CR1 -362 4127 3992 2 978 233 344 101 32 chr6 51624122 51624183 -97892854 + B4A SINE B4 29 192 -100 2 978 454 259 43 35 chr6 51624183 51624299 -97892738 + PB1D10 SINE Alu 1 117 0 2 978 233 344 101 32 chr6 51624299 51624311 -97892726 + B4A SINE B4 193 230 -62 2 978 36 0 0 0 chr6 51624311 51624347 -97892690 + AT_rich Low_complexity Low_complexity 1 36 0 2 978 421 225 200 8 chr6 51624529 51624659 -97892378 + B4A SINE B4 136 290 -2 2 978 387 0 0 0 chr6 51624921 51624964 -97892073 + (TTA)n Simple_repeat Simple_repeat 2 44 0 2 978 333 0 0 0 chr6 51625055 51625092 -97891945 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 978 622 109 17 0 chr6 51625092 51625210 -97891827 + (TG)n Simple_repeat Simple_repeat 2 122 0 2 978 183 156 0 0 chr6 51626250 51626282 -97890755 + G-rich Low_complexity Low_complexity 3 34 0 2 978 201 347 227 21 chr6 51626770 51626964 -97890073 - MIRb SINE MIR -11 257 24 2 978 1818 86 86 4 chr6 51627708 51627976 -97889061 + RLTR9D LTR ERVK 1 290 -113 2 978 2046 49 4 0 chr6 51627976 51628222 -97888815 - L1Md_F2 LINE L1 -336 6246 6000 2 978 382 59 0 93 chr6 51628223 51628298 -97888739 + L1Md_F2 LINE L1 6514 6581 -1 2 978 850 87 16 0 chr6 51628298 51628425 -97888612 + RLTR9D LTR ERVK 275 403 0 2 978 645 272 93 93 chr6 51629252 51629681 -97887356 - L1MB3 LINE L1 -109 6074 5646 2 978 551 181 0 8 chr6 51630118 51630235 -97886802 + CT-rich Low_complexity Low_complexity 2 117 0 2 978 484 300 128 59 chr6 51631209 51631482 -97885555 + B4A SINE B4 1 292 0 2 978 255 61 0 0 chr6 51631549 51631582 -97885455 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 978 424 271 232 40 chr6 51631995 51632151 -97884886 - L2a LINE L2 -5 3370 3170 2 978 506 91 13 0 chr6 51632151 51632228 -97884809 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 978 467 238 118 25 chr6 51632228 51632484 -97884553 - L2a LINE L2 -253 3173 2882 2 978 419 231 0 0 chr6 51632533 51632611 -97884426 - PB1D10 SINE Alu 0 117 40 2 978 741 279 207 42 chr6 51632643 51633309 -97883728 - L2a LINE L2 -540 2879 2104 2 978 30 0 0 0 chr6 51633603 51633633 -97883404 + AT_rich Low_complexity Low_complexity 1 30 0 2 978 1826 132 16 63 chr6 51633646 51633962 -97883075 + ORR1A4 LTR MaLR 21 321 -8 2 978 288 53 0 0 chr6 51634671 51634709 -97882328 + (C)n Simple_repeat Simple_repeat 1 38 0 2 978 1226 181 23 0 chr6 51634776 51634991 -97882046 + URR1A DNA MER1_type 7 226 0 2 978 422 230 55 16 chr6 51636607 51636735 -97880302 - RSINE1 SINE B4 -21 144 12 2 978 816 274 136 18 chr6 51637068 51637347 -97879690 + MER2 DNA MER2_type 22 333 -12 2 978 472 231 0 31 chr6 51637402 51637520 -97879517 + B1_Mur3 SINE Alu 11 120 0 2 978 761 252 39 19 chr6 51637718 51637924 -97879113 + B3 SINE B2 2 211 -5 2 978 4209 198 23 147 chr6 51638194 51638496 -97878541 - Lx7 LINE L1 0 7696 7486 2 978 1052 108 0 6 chr6 51638496 51638663 -97878374 + (GAA)n Simple_repeat Simple_repeat 3 168 0 2 978 4209 198 23 147 chr6 51638663 51638838 -97878199 - Lx7 LINE L1 -211 7485 7353 2 978 324 0 0 0 chr6 51638838 51638874 -97878163 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 978 4209 198 23 147 chr6 51638874 51639644 -97877393 - Lx7 LINE L1 -344 7352 6603 2 978 4357 187 122 4 chr6 51639755 51640527 -97876510 + Lx9 LINE L1 6634 7479 -165 2 978 258 106 0 0 chr6 51640527 51640574 -97876463 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 978 4357 187 122 4 chr6 51640574 51640705 -97876332 + Lx9 LINE L1 7480 7643 -1 2 978 459 360 31 0 chr6 51640736 51640897 -97876140 + MER70A LTR ERVL 304 469 -3 2 978 1930 277 52 40 chr6 51641603 51641748 -97875289 - Lx8 LINE L1 -1 7472 7331 2 978 1522 48 16 0 chr6 51641748 51641934 -97875103 + B2_Mm2 SINE B2 2 190 -5 2 122 1930 277 52 40 chr6 51641934 51642446 -97874591 - Lx8 LINE L1 -143 7330 6807 2 979 966 246 0 14 chr6 51642499 51642709 -97874328 - B3 SINE B2 -9 207 1 2 979 1332 42 0 18 chr6 51642920 51643090 -97873947 + L1Md_T LINE L1 6416 6582 0 2 979 2679 211 30 124 chr6 51643199 51644004 -97873033 - Lx7 LINE L1 -23 7673 6945 2 979 4958 195 48 19 chr6 51643999 51644996 -97872041 - Lx7 LINE L1 -1022 6674 5649 2 979 506 241 211 17 chr6 51645196 51645478 -97871559 - L1M5 LINE L1 -252 5912 5576 2 979 224 368 0 22 chr6 51647279 51647368 -97869669 - MIR3 SINE MIR -14 194 108 3 979 527 287 226 57 chr6 51647754 51648102 -97868935 + MLT1A1 LTR MaLR 1 407 -1 3 979 280 264 43 32 chr6 51648548 51648642 -97868395 + LTR16D LTR ERVL 552 646 -5 3 979 27 0 0 0 chr6 51649086 51649113 -97867924 + AT_rich Low_complexity Low_complexity 1 27 0 3 979 539 199 22 0 chr6 51649113 51649249 -97867788 - Lx9 LINE L1 -8 7636 7498 3 979 2689 231 33 29 chr6 51649253 51649918 -97867119 + Lx9 LINE L1 6797 7464 -180 3 979 983 198 79 0 chr6 51650201 51650403 -97866634 - ID_B1 SINE B4 -6 218 1 3 979 219 322 49 57 chr6 51651509 51651631 -97865406 + L2b LINE L2 3069 3189 -186 3 979 250 217 0 163 chr6 51651971 51652186 -97864851 + CT-rich Low_complexity Low_complexity 1 180 0 3 979 210 263 17 34 chr6 51653594 51653653 -97863384 - MER5A DNA MER1_type -73 116 59 3 979 303 85 0 0 chr6 51653992 51654039 -97862998 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 3 979 1595 312 50 69 chr6 51655332 51656097 -97860940 + MER63C DNA AcHobo 111 860 -70 3 979 1380 51 7 20 chr6 51656310 51656605 -97860432 + (TTTC)n Simple_repeat Simple_repeat 1 290 0 3 979 210 217 22 0 chr6 51656622 51656668 -97860369 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 979 229 316 19 95 chr6 51660276 51660381 -97856656 + MIR SINE MIR 35 131 -131 3 979 225 0 0 0 chr6 51662059 51662084 -97854953 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 979 328 341 58 35 chr6 51662706 51662879 -97854158 + MER113 DNA MER1_type 335 511 -10 3 979 599 269 0 0 chr6 51663214 51663359 -97853678 + B1F SINE Alu 3 147 -2 3 979 1620 30 0 0 chr6 51663432 51663929 -97853108 + (TG)n Simple_repeat Simple_repeat 1 497 0 3 979 218 133 0 138 chr6 51663946 51664033 -97853004 + T-rich Low_complexity Low_complexity 4 78 0 3 979 467 248 136 9 chr6 51664576 51664686 -97852351 - B1_Mur1 SINE Alu -2 147 24 3 979 342 260 77 1 chr6 51664810 51664941 -97852096 - L1MA6 LINE L1 -130 6170 6028 3 979 368 258 11 0 chr6 51665959 51666048 -97850989 + B4A SINE B4 202 291 -1 3 979 205 197 15 15 chr6 51666049 51666116 -97850921 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 979 387 0 0 0 chr6 51666116 51666159 -97850878 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 979 186 71 0 0 chr6 51666324 51666352 -97850685 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 979 2616 275 103 24 chr6 51666352 51667231 -97849806 - Lx9 LINE L1 -129 7515 6564 3 979 327 318 59 32 chr6 51667275 51667496 -97849541 + MamRep434 DNA TcMar 165 391 -35 3 979 225 252 65 32 chr6 51668026 51668149 -97848888 - L1ME4a LINE L1 -32 6092 5966 3 979 310 325 70 0 chr6 51668285 51668399 -97848638 - L1ME4a LINE L1 -336 5788 5667 3 979 245 316 62 10 chr6 51668769 51668865 -97848172 - MIRb SINE MIR -121 147 47 3 979 232 333 24 12 chr6 51669056 51669138 -97847899 - ID4 SINE ID 0 83 1 3 979 412 355 65 100 chr6 51669248 51669527 -97847510 + B4A SINE B4 24 292 0 3 979 181 286 0 49 chr6 51670218 51670299 -97846738 - MIR3 SINE MIR -45 163 87 3 979 199 257 373 12 chr6 51670292 51670461 -97846576 + MIR SINE MIR 20 249 -13 3 979 258 192 0 0 chr6 51670486 51670538 -97846499 + GA-rich Low_complexity Low_complexity 2 53 0 3 979 423 369 75 5 chr6 51671050 51671249 -97845788 + MIR SINE MIR 23 235 -27 3 979 357 196 33 0 chr6 51671289 51671381 -97845656 - L1MB4 LINE L1 -1 6179 6085 3 979 275 400 75 17 chr6 51672865 51673038 -97843999 - LTR41 LTR ERVL -217 551 369 3 979 966 139 0 0 chr6 51673456 51673621 -97843416 + (CA)n Simple_repeat Simple_repeat 2 166 0 3 979 453 300 116 29 chr6 51673640 51674044 -97842993 - L1MB5 LINE L1 -92 6082 5638 3 979 1076 46 129 26 chr6 51674383 51674523 -97842514 + B2_Mm2 SINE B2 3 161 -34 3 979 189 0 0 0 chr6 51674523 51674544 -97842493 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 3 979 1076 46 129 26 chr6 51674544 51674558 -97842479 + B2_Mm2 SINE B2 162 173 -22 3 979 192 40 0 0 chr6 51675376 51675401 -97841636 + (CAAT)n Simple_repeat Simple_repeat 3 27 0 3 979 1093 163 21 0 chr6 51675479 51675669 -97841368 + ORR1C2 LTR MaLR 1 194 -190 3 979 1929 126 5 125 chr6 51675671 51676071 -97840966 - ORR1B1 LTR MaLR -2 392 41 3 979 1019 223 0 0 chr6 51676078 51676271 -97840766 + ORR1C2 LTR MaLR 192 384 0 3 979 202 313 96 0 chr6 51677857 51677940 -97839097 + MIRb SINE MIR 55 145 -123 3 979 230 356 95 35 chr6 51679335 51679504 -97837533 + L3 LINE CR1 3261 3439 -1050 3 979 513 226 39 31 chr6 51679644 51679772 -97837265 + B4A SINE B4 15 143 -149 3 979 741 263 23 6 chr6 51679835 51680011 -97837026 + B3A SINE B2 2 180 -18 3 979 240 357 7 79 chr6 51680022 51680162 -97836875 + RMER12 LTR ERVK 722 851 -471 3 979 261 228 0 0 chr6 51680174 51680253 -97836784 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 979 338 102 0 0 chr6 51680328 51680377 -97836660 + HAL1-3A_ME LINE L1 1977 2025 -833 3 979 441 293 8 8 chr6 51681372 51681506 -97835531 + L1ME1 LINE L1 5760 5893 -286 3 979 207 0 0 0 chr6 51681720 51681743 -97835294 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 979 607 238 99 40 chr6 51683273 51683665 -97833372 - L1MB8 LINE L1 -9 6169 5750 3 979 277 347 20 0 chr6 51684941 51685039 -97831998 - MER58C DNA MER1_type -93 122 23 3 979 330 26 0 0 chr6 51687726 51687765 -97829272 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 979 27 0 0 0 chr6 51688257 51688284 -97828753 + AT_rich Low_complexity Low_complexity 1 27 0 3 979 697 65 360 0 chr6 51688939 51689078 -97827959 + B2_Mm1a SINE B2 2 190 -3 3 979 270 0 0 0 chr6 51689147 51689177 -97827860 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 979 810 260 83 68 chr6 51690594 51690945 -97826092 - ORR1E LTR MaLR -2 357 2 3 979 549 0 0 0 chr6 51690955 51691016 -97826021 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 3 979 442 292 75 0 chr6 51691016 51691136 -97825901 - ID_B1 SINE B4 -14 210 82 3 979 213 39 0 0 chr6 51695012 51695038 -97821999 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 3 979 414 0 0 0 chr6 51695058 51695104 -97821933 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 979 312 27 0 0 chr6 51695310 51695347 -97821690 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 979 1003 251 160 63 chr6 51695526 51695908 -97821129 + MTD LTR MaLR 1 419 0 3 979 685 260 36 63 chr6 51696489 51696711 -97820326 + B3 SINE B2 1 216 0 3 979 1056 56 0 112 chr6 51697347 51697508 -97819529 + B1_Mus1 SINE Alu 2 144 -4 3 979 275 65 0 21 chr6 51697510 51697557 -97819480 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 3 979 25 31 0 0 chr6 51697601 51697633 -97819404 + AT_rich Low_complexity Low_complexity 1 32 0 3 979 1337 222 86 55 chr6 51697803 51698151 -97818886 - ORR1E LTR MaLR 0 359 1 3 979 477 0 0 0 chr6 51698198 51698251 -97818786 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 979 669 121 57 14 chr6 51698254 51698638 -97818399 + (TG)n Simple_repeat Simple_repeat 1 400 0 3 979 250 268 157 12 chr6 51698643 51698726 -97818311 - B4A SINE B4 -3 289 195 3 979 593 317 38 0 chr6 51700264 51700447 -97816590 - ID_B1 SINE B4 -31 193 4 3 979 283 256 213 41 chr6 51702455 51702467 -97814570 - B1F SINE Alu 0 149 93 3 979 408 263 53 0 chr6 51702467 51702562 -97814475 - ID_B1 SINE B4 -7 217 118 3 979 283 256 213 41 chr6 51702562 51702577 -97814460 - B1F SINE Alu 0 92 7 3 979 332 367 23 8 chr6 51702579 51702708 -97814329 - LTR16C LTR ERVL -144 345 215 3 979 308 255 43 43 chr6 51702880 51702995 -97814042 - MIR SINE MIR -146 116 2 3 979 350 222 0 11 chr6 51704732 51704823 -97812214 + CT-rich Low_complexity Low_complexity 2 91 0 3 979 307 369 60 57 chr6 51704977 51705310 -97811727 - ORR1D2 LTR MaLR -14 356 23 3 979 3520 25 2 0 chr6 51705443 51705838 -97811199 - MTA_Mm LTR MaLR 0 396 1 3 979 23 33 0 0 chr6 51705980 51706010 -97811027 + AT_rich Low_complexity Low_complexity 1 30 0 3 979 614 332 121 4 chr6 51708415 51708672 -97808365 - MER63B DNA AcHobo -3 433 147 3 979 246 291 97 35 chr6 51708833 51708947 -97808090 - MLT1J1 LTR MaLR -88 360 240 3 979 307 341 41 10 chr6 51708980 51709111 -97807926 - MLT1J1 LTR MaLR -309 139 1 3 979 732 85 0 0 chr6 51710191 51710309 -97806728 + (GTTTG)n Simple_repeat Simple_repeat 2 119 0 3 979 191 327 90 20 chr6 51710959 51711111 -97805926 - MIRb SINE MIR -52 216 39 3 979 255 288 135 64 chr6 51711937 51712093 -97804944 - MIRb SINE MIR -8 260 94 3 979 396 155 0 0 chr6 51712093 51712164 -97804873 + CT-rich Low_complexity Low_complexity 2 72 0 3 979 623 152 195 0 chr6 51712165 51712283 -97804754 - B1_Mus1 SINE Alu -5 143 3 3 979 558 290 117 12 chr6 51712904 51713152 -97803885 + B4A SINE B4 3 276 -16 3 979 946 36 36 0 chr6 51713195 51713334 -97803703 + (CA)n Simple_repeat Simple_repeat 1 144 0 3 979 1370 234 61 33 chr6 51713363 51713819 -97803218 - L1MA8 LINE L1 -6 6285 5817 3 979 257 0 30 0 chr6 51714290 51714323 -97802714 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 979 447 19 0 0 chr6 51714323 51714375 -97802662 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 979 21 71 0 0 chr6 51714533 51714575 -97802462 + AT_rich Low_complexity Low_complexity 1 42 0 3 979 509 229 18 35 chr6 51715103 51715216 -97801821 + ID_B1 SINE B4 61 171 -53 3 979 504 0 0 0 chr6 51715486 51715542 -97801495 + (CAAAC)n Simple_repeat Simple_repeat 3 58 0 3 979 1362 144 18 5 chr6 51715561 51715784 -97801253 + URR1A DNA MER1_type 1 226 0 3 979 185 319 0 0 chr6 51716150 51716197 -97800840 + MIR3 SINE MIR 140 186 -22 3 979 416 327 38 84 chr6 51716230 51716467 -97800570 - MIRb SINE MIR -20 248 23 4 979 378 0 0 0 chr6 51718574 51718616 -97798421 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 979 254 284 30 0 chr6 51719067 51719134 -97797903 + ORR1E LTR MaLR 245 313 -46 4 979 527 327 51 67 chr6 51719996 51720327 -97796710 - ORR1E LTR MaLR -33 326 1 4 979 481 298 100 22 chr6 51720339 51720425 -97796612 - L1MB2 LINE L1 -55 6116 6030 4 979 944 197 10 10 chr6 51720425 51720620 -97796417 + B2_Mm2 SINE B2 1 195 0 4 979 481 310 163 33 chr6 51720620 51720927 -97796110 - L1MB2 LINE L1 -142 6029 5676 4 979 267 31 0 0 chr6 51722924 51722956 -97794081 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 4 979 7192 57 0 0 chr6 51723161 51724085 -97792952 - L1Md_T LINE L1 0 6582 5706 4 979 874 217 39 34 chr6 51724903 51725108 -97791929 - B3 SINE B2 0 216 11 4 979 269 365 21 48 chr6 51725471 51725658 -97791379 - MLT1B LTR MaLR -121 269 88 4 979 263 257 152 38 chr6 51725705 51725810 -97791227 + ORR1D2 LTR MaLR 6 122 -248 4 979 2074 133 9 6 chr6 51726078 51726418 -97790619 + RLTR15 LTR ERVK 1 341 -18 4 979 372 22 0 0 chr6 51727034 51727079 -97789958 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 979 739 211 77 11 chr6 51727122 51727304 -97789733 - B2_Mm2 SINE B2 0 195 2 4 979 242 328 15 0 chr6 51727654 51727721 -97789316 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 4 979 261 287 59 38 chr6 51727745 51727858 -97789179 - MIRc SINE MIR -126 150 35 4 979 1858 168 120 6 chr6 51727866 51728238 -97788799 + MTD LTR MaLR 1 408 -11 4 979 7150 115 38 4 chr6 51730221 51730478 -97786559 + L1_Mur2 LINE L1 4332 4611 -1266 4 979 423 0 0 0 chr6 51730478 51730525 -97786512 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 979 7150 115 38 4 chr6 51730525 51731384 -97785653 + L1_Mur2 LINE L1 4612 5485 -392 4 979 28 29 0 0 chr6 51731417 51731452 -97785585 + AT_rich Low_complexity Low_complexity 1 35 0 4 979 323 154 0 15 chr6 51731470 51731536 -97785501 + GA-rich Low_complexity Low_complexity 2 66 0 4 979 520 152 0 15 chr6 51734233 51734367 -97782670 + CT-rich Low_complexity Low_complexity 2 133 0 4 979 863 136 7 0 chr6 51734410 51734557 -97782480 + (TCC)n Simple_repeat Simple_repeat 3 150 0 4 979 1171 55 7 0 chr6 51734559 51734704 -97782333 - B1_Mus2 SINE Alu -1 146 1 4 979 512 204 9 9 chr6 51734726 51734858 -97782179 - B1_Mus2 SINE Alu 0 149 18 4 979 1791 261 77 18 chr6 51735469 51735604 -97781433 - Lx8 LINE L1 -2 7471 7331 4 979 243 0 0 0 chr6 51735604 51735631 -97781406 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 979 1791 261 77 18 chr6 51735631 51736042 -97780995 - Lx8 LINE L1 -143 7330 6894 4 979 786 241 75 23 chr6 51736231 51736626 -97780411 - Lx8 LINE L1 -1615 6081 5627 4 979 3310 273 50 53 chr6 51736651 51737804 -97779233 + Lx9 LINE L1 6368 7517 -127 4 979 349 171 120 67 chr6 51737811 51737961 -97779076 + Lx9 LINE L1 7477 7634 -10 4 979 1188 133 148 0 chr6 51738751 51738947 -97778090 + URR1A DNA MER1_type 1 225 -1 4 979 340 229 125 0 chr6 51739405 51739501 -97777536 + L1MB3 LINE L1 5871 5978 -202 4 979 429 233 25 25 chr6 51739531 51739650 -97777387 + L1MB3 LINE L1 6065 6183 0 4 979 1059 52 0 0 chr6 51743562 51743696 -97773341 + (TC)n Simple_repeat Simple_repeat 2 135 0 4 979 190 256 138 43 chr6 51744678 51744772 -97772265 - MIR SINE MIR -90 118 16 4 979 786 75 0 0 chr6 51744951 51745057 -97771980 + (GA)n Simple_repeat Simple_repeat 2 107 0 4 979 186 156 52 0 chr6 51745066 51745143 -97771894 + (CAGAGA)n Simple_repeat Simple_repeat 2 82 0 4 979 504 274 190 9 chr6 51745156 51745388 -97771649 + MLT1B LTR MaLR 76 349 -41 4 979 312 186 0 33 chr6 51745833 51745894 -97771143 - MTE2b LTR MaLR -7 372 314 4 979 231 250 0 0 chr6 51745895 51745963 -97771074 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 979 219 229 0 20 chr6 51745974 51746023 -97771014 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 979 1046 275 116 0 chr6 51746055 51746313 -97770724 - MTE2b LTR MaLR -89 290 3 4 979 244 229 42 28 chr6 51746668 51746740 -97770297 + MIR3 SINE MIR 107 179 -29 4 979 360 338 117 0 chr6 51746846 51747027 -97770010 - MIR SINE MIR -49 219 11 4 979 1345 251 34 11 chr6 51747040 51747398 -97769639 - ORR1D2 LTR MaLR -4 366 1 4 979 1405 221 118 24 chr6 51747447 51747786 -97769251 - MTE2b LTR MaLR -8 371 1 4 979 225 232 53 18 chr6 51747813 51747870 -97769167 - L2c LINE L2 -6 3381 3323 4 979 228 60 80 0 chr6 51747944 51747994 -97769043 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 979 256 258 30 0 chr6 51750274 51750340 -97766697 + CT-rich Low_complexity Low_complexity 3 70 0 4 979 1004 139 0 9 chr6 51750815 51751134 -97765903 + (CTCA)n Simple_repeat Simple_repeat 1 316 0 4 979 363 276 0 62 chr6 51751763 51751844 -97765193 - ID4_ SINE ID -6 77 2 4 979 333 338 67 53 chr6 51752298 51752523 -97764514 - L3 LINE CR1 -652 3837 3610 4 979 232 300 0 14 chr6 51752532 51752603 -97764434 - L3 LINE CR1 -1073 3416 3347 4 979 1220 15 0 0 chr6 51753380 51753515 -97763522 + B1_Mus1 SINE Alu 1 135 -13 4 979 198 0 0 0 chr6 51754087 51754109 -97762928 + (TTG)n Simple_repeat Simple_repeat 2 23 0 4 979 528 263 15 15 chr6 51754125 51754260 -97762777 - B1_Mur1 SINE Alu -13 136 2 4 979 1002 237 5 18 chr6 51754487 51754706 -97762331 + B3 SINE B2 1 216 0 4 979 303 85 0 0 chr6 51754738 51754785 -97762252 + (ATTG)n Simple_repeat Simple_repeat 1 47 0 4 979 533 276 13 44 chr6 51754791 51754950 -97762087 - RSINE1 SINE B4 -10 155 2 4 979 348 286 0 11 chr6 51754951 51755043 -97761994 - B4A SINE B4 -200 92 2 4 979 345 288 50 8 chr6 51755151 51755270 -97761767 + L1MB7 LINE L1 5780 5903 -281 4 979 392 319 73 34 chr6 51755391 51755625 -97761412 + L1MB7 LINE L1 5926 6168 -16 4 979 248 53 26 0 chr6 51756692 51756730 -97760307 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 979 824 265 95 92 chr6 51757445 51757794 -97759243 - ORR1E LTR MaLR -9 350 1 4 979 1223 258 98 3 chr6 51758313 51758659 -97758378 + MTEa LTR MaLR 1 379 0 4 979 297 0 0 0 chr6 51759159 51759192 -97757845 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 979 504 346 43 10 chr6 51759783 51760084 -97756953 + L1MC1 LINE L1 4566 4876 -1270 4 979 316 91 15 15 chr6 51760296 51760363 -97756674 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 4 979 448 305 148 50 chr6 51760472 51761156 -97755881 + L1MC1 LINE L1 5577 6327 -6 4 979 214 297 70 22 chr6 51761268 51761368 -97755669 - MIRc SINE MIR -45 223 115 4 979 871 213 100 11 chr6 51761377 51761567 -97755470 + B3 SINE B2 1 207 -9 4 979 494 367 79 31 chr6 51762122 51762476 -97754561 - MLT1I LTR MaLR -4 407 37 4 979 181 234 44 59 chr6 51763090 51763158 -97753879 + MIRm SINE MIR 81 147 -129 4 979 215 311 36 45 chr6 51763241 51763352 -97753685 + MIR SINE MIR 68 177 -85 4 979 325 216 65 102 chr6 51763738 51763846 -97753191 + PB1D10 SINE Alu 1 104 -13 4 979 211 333 103 52 chr6 51763870 51764044 -97752993 - L2b LINE L2 -79 3296 3114 4 979 231 261 0 0 chr6 51764064 51764110 -97752927 - L2c LINE L2 -3 3384 3339 4 979 180 243 0 0 chr6 51765029 51765066 -97751971 - L4 LINE RTE -967 1062 1026 4 979 21 0 0 0 chr6 51765467 51765488 -97751549 + AT_rich Low_complexity Low_complexity 1 21 0 4 979 501 17 0 0 chr6 51765985 51766043 -97750994 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 979 252 298 69 45 chr6 51766452 51766593 -97750444 - MIRc SINE MIR -51 217 74 4 979 363 346 0 36 chr6 51768142 51768253 -97748784 - PB1D10 SINE Alu -10 107 1 4 979 22 56 0 0 chr6 51768258 51768294 -97748743 + AT_rich Low_complexity Low_complexity 1 36 0 4 979 210 311 203 43 chr6 51768831 51768969 -97748068 + MIRb SINE MIR 95 254 -14 4 979 845 220 82 17 chr6 51769924 51770155 -97746882 - MTE2a LTR MaLR -133 246 1 4 979 506 285 68 24 chr6 51770254 51770459 -97746578 - RMER15 LTR ERVL -11 564 351 4 979 1146 15 0 0 chr6 51771250 51771382 -97745655 + (TCTCC)n Simple_repeat Simple_repeat 5 136 0 4 979 540 0 0 0 chr6 51771382 51771442 -97745595 + (TTC)n Simple_repeat Simple_repeat 3 62 0 4 979 773 24 57 0 chr6 51771442 51771566 -97745471 + (TC)n Simple_repeat Simple_repeat 2 132 0 4 979 351 0 0 0 chr6 51771566 51771604 -97745433 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 979 433 289 0 73 chr6 51772595 51772759 -97744278 - MER5B DNA MER1_type -26 152 1 4 979 680 278 28 22 chr6 51772773 51772953 -97744084 + RMER30 DNA MER1_type 20 200 -2 4 979 449 269 50 67 chr6 51772994 51773154 -97743883 - MER45A DNA Tip100 -1 177 18 4 122 1481 234 21 70 chr6 51773154 51773540 -97743497 + ORR1D2 LTR MaLR 4 370 0 4 980 449 269 50 67 chr6 51773540 51773558 -97743479 - MER45A DNA Tip100 -161 17 2 4 980 798 237 102 10 chr6 51773955 51774151 -97742886 + B4A SINE B4 49 262 -30 4 980 381 43 0 0 chr6 51774155 51774202 -97742835 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 980 342 0 0 0 chr6 51777100 51777138 -97739899 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 980 797 246 185 83 chr6 51777944 51778296 -97738741 - RMER4B LTR ERVK 0 585 209 4 980 1255 21 7 0 chr6 51778296 51778441 -97738596 + B1_Mus1 SINE Alu 3 148 0 4 980 797 246 185 83 chr6 51778441 51778619 -97738418 - RMER4B LTR ERVK -377 208 2 4 980 1182 61 0 0 chr6 51778989 51779136 -97737901 + B1_Mus1 SINE Alu 2 148 0 4 980 28 29 0 0 chr6 51779136 51779171 -97737866 + AT_rich Low_complexity Low_complexity 1 35 0 4 980 688 271 79 94 chr6 51779191 51779468 -97737569 + B4A SINE B4 2 274 -18 4 980 558 0 0 0 chr6 51779483 51779545 -97737492 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 980 285 89 0 0 chr6 51779561 51779606 -97737431 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 980 407 336 75 26 chr6 51779610 51779836 -97737201 - MLT1I LTR MaLR -78 333 97 4 980 200 200 0 22 chr6 51780094 51780140 -97736897 + G-rich Low_complexity Low_complexity 4 48 0 4 980 388 304 27 7 chr6 51781391 51781540 -97735497 + MER5A1 DNA MER1_type 12 163 -3 5 980 237 296 105 50 chr6 51781877 51782115 -97734922 + L1MC4a LINE L1 5913 6163 -1719 5 980 1068 266 120 16 chr6 51782118 51782485 -97734552 + MTD LTR MaLR 1 405 -14 5 980 341 43 0 21 chr6 51782488 51782536 -97734501 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 5 980 980 248 62 83 chr6 51782614 51783001 -97734036 - MTE2a LTR MaLR 0 379 1 5 980 274 344 164 28 chr6 51783011 51783445 -97733592 + L1MC4a LINE L1 6252 6744 -1138 5 980 505 261 99 16 chr6 51783508 51783725 -97733312 - L1MB3 LINE L1 -131 6047 5807 5 980 2418 137 75 14 chr6 51783741 51784157 -97732880 - BGLII_A LTR ERVK -4 441 1 5 980 271 284 13 0 chr6 51784474 51784565 -97732472 - L1MB3 LINE L1 -510 5790 5699 5 980 746 265 62 23 chr6 51784936 51785195 -97731842 + B4A SINE B4 2 270 -22 5 980 381 75 0 0 chr6 51785195 51785248 -97731789 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 980 424 253 19 38 chr6 51786493 51786653 -97730384 - RSINE1 SINE B4 -5 160 4 5 980 208 174 0 21 chr6 51788163 51788210 -97728827 + T-rich Low_complexity Low_complexity 3 48 0 5 980 869 115 58 0 chr6 51789413 51789552 -97727485 + B1_Mus1 SINE Alu 2 148 0 5 980 338 0 24 0 chr6 51789652 51789694 -97727343 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 980 219 36 0 0 chr6 51793892 51793920 -97723117 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 980 647 294 0 7 chr6 51794954 51795098 -97721939 + RSINE1 SINE B4 6 148 -17 5 980 25 31 0 0 chr6 51796387 51796419 -97720618 + AT_rich Low_complexity Low_complexity 1 32 0 5 980 296 164 0 15 chr6 51797784 51797852 -97719185 + GA-rich Low_complexity Low_complexity 3 69 0 5 980 252 0 0 0 chr6 51798678 51798706 -97718331 + (A)n Simple_repeat Simple_repeat 1 28 0 5 980 219 69 0 0 chr6 51798809 51798838 -97718199 + (TCC)n Simple_repeat Simple_repeat 1 29 0 5 980 261 98 0 0 chr6 51800921 51800962 -97716075 + (A)n Simple_repeat Simple_repeat 1 41 0 5 980 22 35 0 0 chr6 51802226 51802255 -97714782 + AT_rich Low_complexity Low_complexity 1 29 0 5 980 279 133 0 0 chr6 51804475 51804520 -97712517 + (CAA)n Simple_repeat Simple_repeat 2 46 0 5 980 762 37 9 9 chr6 51805638 51805746 -97711291 - B1_Mur4 SINE Alu -2 148 41 5 980 513 115 0 0 chr6 51805834 51805912 -97711125 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 980 282 248 88 0 chr6 51806239 51806330 -97710707 - PB1D10 SINE Alu -9 108 1 5 980 25 0 0 0 chr6 51808903 51808928 -97708109 + AT_rich Low_complexity Low_complexity 1 25 0 5 980 228 167 22 22 chr6 51810266 51810358 -97706679 + (CAAA)n Simple_repeat Simple_repeat 1 92 0 5 980 22 56 0 0 chr6 51811218 51811254 -97705783 + AT_rich Low_complexity Low_complexity 1 36 0 5 980 216 186 0 0 chr6 51814247 51814306 -97702731 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 980 184 273 23 0 chr6 51816294 51816338 -97700699 + MIR3 SINE MIR 115 159 -49 5 980 29 28 0 0 chr6 51817170 51817206 -97699831 + AT_rich Low_complexity Low_complexity 1 36 0 5 980 456 282 33 13 chr6 51817607 51817758 -97699279 + MTD LTR MaLR 21 174 -245 5 980 294 253 77 0 chr6 51817776 51817867 -97699170 + MTD LTR MaLR 278 375 -44 5 980 207 0 0 0 chr6 51817891 51817914 -97699123 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 980 548 244 79 51 chr6 51818088 51818265 -97698772 - B3A SINE B2 -16 182 1 5 980 333 0 0 0 chr6 51818478 51818515 -97698522 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 980 360 64 0 0 chr6 51818876 51818923 -97698114 + (CAAG)n Simple_repeat Simple_repeat 1 47 0 5 980 198 0 0 0 chr6 51819144 51819166 -97697871 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 5 980 1191 41 7 0 chr6 51820000 51820145 -97696892 + B1_Mus2 SINE Alu 2 147 0 5 980 225 0 0 0 chr6 51820145 51820170 -97696867 + (A)n Simple_repeat Simple_repeat 1 25 0 5 980 248 130 22 0 chr6 51820659 51820705 -97696332 + GA-rich Low_complexity Low_complexity 1 47 0 5 980 30 59 0 0 chr6 51821014 51821065 -97695972 + AT_rich Low_complexity Low_complexity 1 51 0 5 980 305 334 25 1 chr6 51821493 51821585 -97695452 - RSINE1 SINE B4 -68 97 3 5 980 3049 76 0 19 chr6 51822416 51822833 -97694204 + L1_Mus1 LINE L1 6159 6567 0 5 980 288 0 0 0 chr6 51823371 51823403 -97693634 + (GGATG)n Simple_repeat Simple_repeat 2 33 0 5 980 398 204 0 11 chr6 51825841 51825935 -97691102 + GA-rich Low_complexity Low_complexity 1 93 0 5 980 180 111 0 0 chr6 51826154 51826181 -97690856 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 980 231 114 0 0 chr6 51826629 51826673 -97690364 + (T)n Simple_repeat Simple_repeat 1 44 0 5 980 21 0 0 0 chr6 51827663 51827684 -97689353 + AT_rich Low_complexity Low_complexity 1 21 0 5 980 223 292 109 40 chr6 51830387 51830562 -97686475 - MIR3 SINE MIR -18 190 4 5 980 21 0 0 0 chr6 51832158 51832179 -97684858 + AT_rich Low_complexity Low_complexity 1 21 0 5 980 233 336 15 67 chr6 51834045 51834179 -97682858 - MIRb SINE MIR -58 210 84 5 980 1000 32 0 0 chr6 51834468 51834593 -97682444 - B1_Mus2 SINE Alu 0 147 23 5 980 386 283 142 22 chr6 51835295 51835606 -97681431 + Lx9 LINE L1 7270 7617 -27 5 980 27 49 0 0 chr6 51836021 51836062 -97680975 + AT_rich Low_complexity Low_complexity 1 41 0 5 980 21 0 0 0 chr6 51836202 51836223 -97680814 + AT_rich Low_complexity Low_complexity 1 21 0 5 980 1483 43 16 0 chr6 51836276 51836460 -97680577 + B2_Mm2 SINE B2 2 188 -7 5 980 457 273 71 14 chr6 51836661 51836802 -97680235 + Charlie1a DNA MER1_type 536 684 -771 5 980 183 302 50 30 chr6 51837032 51837131 -97679906 + L2c LINE L2 3097 3197 -190 5 980 189 0 0 0 chr6 51837645 51837666 -97679371 + (T)n Simple_repeat Simple_repeat 1 21 0 5 980 270 167 0 0 chr6 51837959 51838019 -97679018 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 980 239 229 186 0 chr6 51838042 51838112 -97678925 - B4 SINE B4 -15 277 195 5 980 281 315 144 65 chr6 51838135 51838274 -97678763 - B4A SINE B4 -140 152 3 5 980 299 294 188 7 chr6 51838653 51838807 -97678230 - MER5A DNA MER1_type -3 186 5 5 980 607 291 13 0 chr6 51838874 51839025 -97678012 + ID_B1 SINE B4 15 167 -57 5 980 405 248 74 28 chr6 51838943 51839051 -97677986 + PB1D10 SINE Alu 5 117 0 5 980 476 280 95 19 chr6 51839433 51839644 -97677393 - MIRb SINE MIR -21 247 21 5 980 644 229 66 0 chr6 51841666 51841788 -97675249 + B3 SINE B2 1 130 -86 5 980 247 207 69 0 chr6 51841960 51842018 -97675019 + MADE2 DNA Mariner 2 63 -17 5 980 733 161 66 0 chr6 51844400 51844537 -97672500 - B1_Mus2 SINE Alu -1 146 1 5 980 348 24 0 0 chr6 51847664 51847705 -97669332 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 5 980 400 238 62 0 chr6 51847705 51847785 -97669252 - PB1D10 SINE Alu -32 85 1 5 980 226 322 31 55 chr6 51847785 51847835 -97669202 - MT2B LTR ERVL -438 163 117 5 980 372 339 9 0 chr6 51848054 51848169 -97668868 + ORR1E LTR MaLR 26 141 -218 5 980 238 211 97 14 chr6 51849879 51849951 -97667086 - ID4 SINE ID -5 78 1 5 980 323 293 0 0 chr6 51850106 51850205 -97666832 - L1M4 LINE L1 -3504 2642 2544 5 980 331 343 29 7 chr6 51850340 51850478 -97666559 - L1M4 LINE L1 -3772 2374 2234 5 980 300 53 0 0 chr6 51850479 51850517 -97666520 + (T)n Simple_repeat Simple_repeat 1 38 0 5 980 3980 49 12 16 chr6 51850782 51851299 -97665738 - L1Md_F2 LINE L1 -2 6580 6066 5 980 224 319 8 25 chr6 51852078 51852197 -97664840 + GA-rich Low_complexity Low_complexity 3 119 0 5 980 23 0 0 0 chr6 51852923 51852946 -97664091 + AT_rich Low_complexity Low_complexity 1 23 0 5 980 283 310 23 0 chr6 51853060 51853147 -97663890 - MER20 DNA MER1_type 0 219 131 5 980 195 129 0 0 chr6 51853168 51853199 -97663838 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 980 21 0 0 0 chr6 51853410 51853431 -97663606 + AT_rich Low_complexity Low_complexity 1 21 0 5 980 222 282 0 14 chr6 51853517 51853589 -97663448 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 5 980 25 31 0 0 chr6 51853596 51853628 -97663409 + AT_rich Low_complexity Low_complexity 1 32 0 5 980 270 0 0 0 chr6 51854278 51854308 -97662729 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 980 507 33 0 0 chr6 51854308 51854368 -97662669 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 980 998 151 201 0 chr6 51856614 51856793 -97660244 + B3 SINE B2 1 215 -1 5 980 243 191 265 0 chr6 51856844 51856912 -97660125 - MIRb SINE MIR -52 216 131 5 980 22 0 0 0 chr6 51857611 51857633 -97659404 + AT_rich Low_complexity Low_complexity 1 22 0 5 980 224 333 55 11 chr6 51860434 51860525 -97656512 + PB1D10 SINE Alu 15 109 -8 5 980 180 111 0 0 chr6 51861183 51861210 -97655827 + (A)n Simple_repeat Simple_repeat 1 27 0 5 980 587 271 153 5 chr6 51861737 51861949 -97655088 + B4A SINE B4 1 245 -47 5 980 785 312 57 35 chr6 51861949 51862231 -97654806 + B4A SINE B4 1 288 -4 5 980 360 126 0 33 chr6 51862607 51862697 -97654340 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 980 296 313 51 44 chr6 51863864 51864001 -97653036 + ORR1E LTR MaLR 2 139 -220 5 980 524 251 243 12 chr6 51864489 51864658 -97652379 + ID_B1 SINE B4 1 208 -16 5 980 459 0 0 0 chr6 51864659 51864710 -97652327 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 980 432 55 0 0 chr6 51865413 51865468 -97651569 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 980 730 119 224 7 chr6 51866152 51866177 -97650860 - B2_Mm2 SINE B2 -9 186 160 5 980 1056 146 0 0 chr6 51866177 51866355 -97650682 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 5 980 730 119 224 7 chr6 51866355 51866481 -97650556 - B2_Mm2 SINE B2 -36 159 2 5 980 756 214 126 16 chr6 51866540 51866730 -97650307 + B3 SINE B2 1 211 -5 5 980 234 0 0 0 chr6 51866731 51866757 -97650280 + (T)n Simple_repeat Simple_repeat 1 26 0 6 980 716 285 120 16 chr6 51867470 51867837 -97649200 - MLT1A1 LTR MaLR -2 406 2 6 980 826 100 25 18 chr6 51869776 51869939 -97647098 + Lx3_Mus LINE L1 6838 7001 -8 6 980 185 302 91 45 chr6 51870229 51870361 -97646676 + MIR SINE MIR 4 141 -121 6 980 191 181 0 53 chr6 51870528 51870604 -97646433 + GA-rich Low_complexity Low_complexity 2 73 0 6 980 189 107 0 0 chr6 51872930 51872958 -97644079 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 980 221 183 17 0 chr6 51873080 51873140 -97643897 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 6 980 252 100 0 0 chr6 51873143 51873183 -97643854 + (A)n Simple_repeat Simple_repeat 1 40 0 6 980 381 342 6 18 chr6 51873316 51873480 -97643557 + RSINE1 SINE B4 2 163 -2 6 980 933 239 14 14 chr6 51873557 51873769 -97643268 - B3 SINE B2 -3 213 2 6 980 306 0 0 0 chr6 51874655 51874689 -97642348 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 6 980 665 24 12 0 chr6 51875107 51875191 -97641846 - B1_Mus2 SINE Alu -1 146 62 6 980 672 269 121 36 chr6 51875803 51876135 -97640902 - Lx8 LINE L1 -73 7400 7041 6 980 1630 199 87 4 chr6 51876182 51876713 -97640324 + L1_Mur3 LINE L1 3660 4347 -1533 6 980 2617 90 100 7 chr6 51876915 51877375 -97639662 + Lx3_Mus LINE L1 5960 6462 -547 6 980 2765 87 35 22 chr6 51877375 51877776 -97639261 + Lx3_Mus LINE L1 6596 7001 -8 6 980 576 197 98 45 chr6 51878239 51878372 -97638665 - B1_Mur1 SINE Alu 0 149 10 6 980 232 330 16 78 chr6 51878380 51878508 -97638529 - PB1D7 SINE Alu 0 120 1 6 980 439 301 43 29 chr6 51878965 51879105 -97637932 + RSINE1 SINE B4 2 143 -22 6 980 360 0 0 0 chr6 51879135 51879175 -97637862 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 980 25 65 0 0 chr6 51879182 51879228 -97637809 + AT_rich Low_complexity Low_complexity 1 46 0 6 980 559 237 155 66 chr6 51879261 51879442 -97637595 + B3A SINE B2 2 198 0 6 980 230 294 68 112 chr6 51879976 51879987 -97637050 - MT2B2 LTR ERVL -278 306 245 6 980 469 186 36 95 chr6 51879987 51880124 -97636913 - B1F SINE Alu -20 129 1 6 980 230 294 68 112 chr6 51880124 51880137 -97636900 - MT2B2 LTR ERVL -278 244 153 6 980 22 88 0 0 chr6 51880817 51880874 -97636163 + AT_rich Low_complexity Low_complexity 1 57 0 6 980 27 29 0 0 chr6 51881595 51881629 -97635408 + AT_rich Low_complexity Low_complexity 1 34 0 6 980 22 0 0 0 chr6 51883795 51883817 -97633220 + AT_rich Low_complexity Low_complexity 1 22 0 6 980 236 237 17 0 chr6 51884358 51884417 -97632620 + ID4 SINE ID 2 61 -22 6 980 299 247 224 0 chr6 51885170 51885255 -97631782 + PB1D10 SINE Alu 13 116 -1 6 980 22 0 0 0 chr6 51885451 51885473 -97631564 + AT_rich Low_complexity Low_complexity 1 22 0 6 980 386 279 275 31 chr6 51885657 51885892 -97631145 + B4A SINE B4 1 292 0 6 980 246 232 0 18 chr6 51885932 51885989 -97631048 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 980 33 56 0 0 chr6 51886277 51886331 -97630706 + AT_rich Low_complexity Low_complexity 1 54 0 6 980 342 321 185 7 chr6 51886458 51886593 -97630444 + RSINE1 SINE B4 5 163 -2 6 980 255 283 24 40 chr6 51886808 51886933 -97630104 - L1MC4a LINE L1 -559 7323 7201 6 980 349 313 109 0 chr6 51888448 51888595 -97628442 - RSINE1 SINE B4 0 165 3 6 980 247 105 17 17 chr6 51888706 51888764 -97628273 + (CAAAAA)n Simple_repeat Simple_repeat 4 61 0 6 980 192 97 0 0 chr6 51889651 51889682 -97627355 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 980 1112 62 7 7 chr6 51889685 51889832 -97627205 - B1_Mm SINE Alu 0 147 1 6 980 244 109 73 0 chr6 51889832 51889887 -97627150 - L1MD2 LINE L1 -11 6348 6290 6 980 1002 223 9 28 chr6 51890019 51890236 -97626801 + B3 SINE B2 3 215 -1 6 980 338 217 176 34 chr6 51890264 51890383 -97626654 - L1MD1 LINE L1 -55 6304 6169 6 980 486 49 0 0 chr6 51890394 51890455 -97626582 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 980 464 248 40 7 chr6 51890522 51890672 -97626365 - L1MD1 LINE L1 -189 6053 5899 6 980 1140 58 0 0 chr6 51890691 51890829 -97626208 + B1_Mus1 SINE Alu 2 139 -9 6 980 226 0 0 56 chr6 51890829 51890865 -97626172 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 980 418 320 68 0 chr6 51892459 51892606 -97624431 + RSINE1 SINE B4 5 161 -4 6 980 242 250 214 43 chr6 51893203 51893320 -97623717 + MIRb SINE MIR 96 232 -36 6 980 238 287 80 11 chr6 51893480 51893568 -97623469 + MIR SINE MIR 8 101 -161 6 980 27 29 0 0 chr6 51893629 51893663 -97623374 + AT_rich Low_complexity Low_complexity 1 34 0 6 980 324 343 29 29 chr6 51895064 51895202 -97621835 - L2b LINE L2 0 3375 3238 6 980 450 246 13 86 chr6 51896133 51896284 -97620753 + B1F2 SINE Alu 2 141 -8 6 980 1001 205 29 43 chr6 51896294 51896503 -97620534 + B3 SINE B2 2 207 -9 6 980 32 43 0 0 chr6 51896815 51896861 -97620176 + AT_rich Low_complexity Low_complexity 1 46 0 6 980 224 215 153 3 chr6 51897045 51897108 -97619929 + MIR SINE MIR 81 150 -126 6 980 691 317 73 8 chr6 51897320 51897581 -97619456 - MER58B DNA MER1_type -36 305 28 6 980 29 28 0 0 chr6 51898477 51898513 -97618524 + AT_rich Low_complexity Low_complexity 1 36 0 6 980 5934 103 111 2 chr6 51898513 51899222 -97617815 + L1_Mus1 LINE L1 4809 5562 -324 6 980 4389 46 16 13 chr6 51899222 51899775 -97617262 - L1_Mus1 LINE L1 0 6567 6013 6 980 5934 38 8 0 chr6 51899775 51900166 -97616871 + L1_Mus1 LINE L1 5563 6010 -557 6 980 999 111 0 0 chr6 51900205 51900340 -97616697 + B1_Mus1 SINE Alu 2 136 -12 6 980 252 0 0 0 chr6 51900341 51900369 -97616668 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 6 980 6983 193 75 10 chr6 51901017 51902231 -97614806 + Lx7 LINE L1 6035 7329 -367 6 980 207 0 0 0 chr6 51902231 51902254 -97614783 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 6 980 6983 193 75 10 chr6 51902254 51902440 -97614597 + Lx7 LINE L1 7330 7526 -170 6 980 30 0 0 0 chr6 51902531 51902561 -97614476 + AT_rich Low_complexity Low_complexity 1 30 0 6 980 2052 232 58 15 chr6 51902589 51903057 -97613980 + Lx6 LINE L1 6969 7456 -4 6 980 26 30 0 0 chr6 51903452 51903485 -97613552 + AT_rich Low_complexity Low_complexity 1 33 0 6 122 7825 61 9 0 chr6 51903492 51904621 -97612416 - L1_Mus1 LINE L1 0 6567 5428 6 981 1856 73 0 0 chr6 51904617 51904863 -97612174 + L1_Mm LINE L1 5261 5506 -377 6 981 245 220 134 71 chr6 51904906 51905033 -97612004 - L1M LINE L1 -752 5422 5288 6 981 545 282 51 0 chr6 51905036 51905192 -97611845 + MLT1A0 LTR MaLR 202 365 0 6 981 827 212 67 11 chr6 51905365 51905692 -97611345 - Lx4B LINE L1 -4 6972 6607 6 981 270 315 75 11 chr6 51906088 51906181 -97610856 + MER63A DNA AcHobo 1 99 -111 6 981 810 139 73 0 chr6 51907179 51907316 -97609721 + B1_Mus2 SINE Alu 1 147 0 6 981 254 237 158 0 chr6 51907356 51907432 -97609605 + L1ME2z LINE L1 6351 6438 -6 6 981 469 280 6 42 chr6 51907614 51907782 -97609255 - MER115 DNA Tip100 -40 653 492 6 981 352 318 0 0 chr6 51908013 51908145 -97608892 + (AGGTG)n Simple_repeat Simple_repeat 3 134 0 6 981 895 140 0 47 chr6 51909675 51909825 -97607212 - B1_Mur3 SINE Alu -6 143 1 6 981 218 211 35 0 chr6 51909940 51909997 -97607040 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 981 250 179 65 29 chr6 51910260 51910398 -97606639 + (TA)n Simple_repeat Simple_repeat 2 144 0 6 981 835 314 98 32 chr6 51912661 51912810 -97604227 + L1ME1 LINE L1 5480 5652 -527 6 981 328 312 0 0 chr6 51912810 51912887 -97604150 + ID4_ SINE ID 2 78 -5 6 981 835 314 98 32 chr6 51912887 51913332 -97603705 + L1ME1 LINE L1 5653 6112 -67 6 981 193 361 75 8 chr6 51914527 51914683 -97602354 + MIR SINE MIR 6 172 -104 6 981 2467 249 42 33 chr6 51914743 51915188 -97601849 + Lx7 LINE L1 5930 6388 -1308 6 981 2187 155 19 34 chr6 51915188 51915601 -97601436 + MTB_Mm LTR MaLR 1 407 0 6 981 2467 249 42 33 chr6 51915601 51915853 -97601184 + Lx7 LINE L1 6389 6633 -1063 6 981 245 51 26 0 chr6 51915957 51915996 -97601041 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 981 683 315 75 46 chr6 51916477 51916552 -97600485 - B4A SINE B4 -4 288 209 6 981 300 27 0 0 chr6 51916552 51916589 -97600448 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 981 683 315 75 46 chr6 51916589 51916793 -97600244 - B4A SINE B4 -84 208 1 6 981 40 21 0 0 chr6 51916823 51916870 -97600167 + AT_rich Low_complexity Low_complexity 1 47 0 6 981 815 229 81 17 chr6 51916954 51917127 -97599910 + B3 SINE B2 27 210 -6 6 981 535 326 86 0 chr6 51917552 51917739 -97599298 + MLT1F1 LTR MaLR 9 211 -358 6 981 2099 61 0 0 chr6 51917739 51918003 -97599034 - L1_Mus3 LINE L1 -581 6057 5794 6 981 650 278 28 0 chr6 51918003 51918179 -97598858 + MER74A LTR ERVL 188 368 -190 6 981 345 244 24 0 chr6 51918238 51918361 -97598676 + GA-rich Low_complexity Low_complexity 4 129 0 6 981 254 279 13 0 chr6 51918383 51918462 -97598575 + L1MC4 LINE L1 7962 8041 -1 6 981 1279 258 60 14 chr6 51918475 51918892 -97598145 + L1MC3 LINE L1 7194 7629 -156 6 981 1645 197 45 53 chr6 51919605 51919980 -97597057 - ORR1D1 LTR MaLR -2 372 1 6 981 23 33 0 0 chr6 51920118 51920148 -97596889 + AT_rich Low_complexity Low_complexity 1 30 0 6 981 741 219 32 87 chr6 51920860 51921170 -97595867 + L1MA8 LINE L1 4097 4389 -1754 6 981 297 209 0 0 chr6 51921183 51921250 -97595787 + (CACG)n Simple_repeat Simple_repeat 4 70 0 6 981 427 232 59 6 chr6 51921259 51921374 -97595663 + PB1D10 SINE Alu 1 120 0 6 981 1603 264 139 14 chr6 51921424 51922012 -97595025 + L1MA8 LINE L1 4759 5430 -861 6 981 234 0 0 0 chr6 51922012 51922038 -97594999 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 981 414 0 0 0 chr6 51922038 51922083 -97594954 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 981 1603 261 146 36 chr6 51922083 51922815 -97594222 + L1MA8 LINE L1 5431 6239 -52 6 981 315 0 0 0 chr6 51922831 51922866 -97594171 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 981 301 187 15 22 chr6 51923012 51923104 -97593933 + MIRm SINE MIR 39 138 -138 7 981 1047 54 0 0 chr6 51923260 51923389 -97593648 + B1_Mus2 SINE Alu 1 129 -18 7 981 3513 20 0 0 chr6 51923391 51923787 -97593250 + MTA_Mm LTR MaLR 1 396 0 7 981 225 128 0 0 chr6 51923797 51923844 -97593193 + (A)n Simple_repeat Simple_repeat 1 47 0 7 981 26 50 0 0 chr6 51924858 51924898 -97592139 + AT_rich Low_complexity Low_complexity 1 40 0 7 981 22 0 0 0 chr6 51928309 51928331 -97588706 + AT_rich Low_complexity Low_complexity 1 22 0 7 981 238 264 0 0 chr6 51928585 51928638 -97588399 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 981 286 329 123 18 chr6 51930317 51930487 -97586550 - MIR SINE MIR -72 190 3 7 981 1017 224 205 21 chr6 51931143 51931480 -97585557 - MTD LTR MaLR 0 419 21 7 981 477 0 0 0 chr6 51931480 51931533 -97585504 + (CAAAA)n Simple_repeat Simple_repeat 5 57 0 7 981 180 152 0 0 chr6 51931670 51931703 -97585334 + CT-rich Low_complexity Low_complexity 1 33 0 7 981 278 278 14 0 chr6 51931759 51931831 -97585206 - ID4_ SINE ID -9 74 2 7 981 466 347 63 35 chr6 51932005 51932292 -97584745 + L4 LINE RTE 1077 1371 -658 7 981 189 0 0 0 chr6 51932459 51932480 -97584557 + (TTGG)n Simple_repeat Simple_repeat 3 23 0 7 981 228 390 25 20 chr6 51933245 51933444 -97583593 + L4 LINE RTE 1671 1870 -159 7 981 741 231 65 20 chr6 51933622 51933821 -97583216 + B3 SINE B2 1 208 -8 7 981 301 198 12 12 chr6 51933832 51933914 -97583123 + GA-rich Low_complexity Low_complexity 2 83 0 7 981 427 258 10 10 chr6 51934099 51934197 -97582840 - PB1D7 SINE Alu 0 120 23 7 981 29 28 0 0 chr6 51936022 51936058 -97580979 + AT_rich Low_complexity Low_complexity 1 36 0 7 981 320 366 77 41 chr6 51936706 51936900 -97580137 - MER5C1 DNA MER1_type -49 214 14 7 981 833 129 0 0 chr6 51937653 51937769 -97579268 + B1_Mur4 SINE Alu 1 116 -34 7 981 1122 307 80 64 chr6 51937774 51937919 -97579118 + L1MB7 LINE L1 5349 5482 -702 7 981 711 248 0 0 chr6 51937919 51938064 -97578973 + B1_Mur3 SINE Alu 4 148 -1 7 981 1122 307 80 64 chr6 51938064 51938733 -97578304 + L1MB7 LINE L1 5483 6176 -8 7 981 600 148 40 0 chr6 51938943 51939044 -97577993 + B1_Mur1 SINE Alu 37 141 -8 7 981 4759 75 22 2 chr6 51939495 51940136 -97576901 + L1_Mus3 LINE L1 5983 6636 -2 7 981 502 347 28 40 chr6 51940426 51940675 -97576362 - B4A SINE B4 -36 256 11 7 981 450 276 45 13 chr6 51940777 51940931 -97576106 + RSINE1 SINE B4 3 161 -4 7 981 216 143 0 0 chr6 51941563 51941605 -97575432 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 981 592 299 21 0 chr6 51941624 51941768 -97575269 - RSINE1 SINE B4 -16 149 3 7 981 521 304 24 0 chr6 51944212 51944337 -97572700 - RSINE1 SINE B4 0 165 38 7 981 22 0 0 0 chr6 51944704 51944726 -97572311 + AT_rich Low_complexity Low_complexity 1 22 0 7 981 23 0 0 0 chr6 51945571 51945594 -97571443 + AT_rich Low_complexity Low_complexity 1 23 0 7 981 237 33 0 0 chr6 51945849 51945879 -97571158 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 981 369 0 0 0 chr6 51946228 51946269 -97570768 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 981 261 0 0 0 chr6 51947546 51947575 -97569462 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 981 1103 52 0 0 chr6 51947575 51947709 -97569328 - B1_Mus2 SINE Alu -10 137 4 7 981 22 70 0 0 chr6 51948186 51948229 -97568808 + AT_rich Low_complexity Low_complexity 1 43 0 7 981 189 0 0 0 chr6 51949949 51949970 -97567067 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 7 981 403 269 28 0 chr6 51950875 51950983 -97566054 + PB1D7 SINE Alu 5 115 -5 7 981 252 219 76 30 chr6 51952671 51952737 -97564300 + ID4_ SINE ID 12 80 -3 7 981 324 64 0 0 chr6 51957233 51957280 -97559757 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 981 393 152 49 37 chr6 51958937 51959019 -97558018 + AmnSINE1 SINE SINE 98 180 -395 7 981 26 30 0 0 chr6 51959809 51959842 -97557195 + AT_rich Low_complexity Low_complexity 1 33 0 7 981 216 0 0 0 chr6 51963354 51963378 -97553659 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 981 781 213 50 56 chr6 51963746 51964185 -97552852 - RMER17C LTR ERVK -30 380 1 7 981 284 175 16 0 chr6 51964201 51964264 -97552773 + CT-rich Low_complexity Low_complexity 3 66 0 7 981 608 164 171 8 chr6 51964282 51964411 -97552626 - B1_Mur4 SINE Alu 0 150 1 7 981 186 133 0 0 chr6 51965734 51965764 -97551273 + (ATG)n Simple_repeat Simple_repeat 2 31 0 7 981 8118 97 10 11 chr6 51965879 51967115 -97549922 + Lx2 LINE L1 5635 6868 -129 7 981 257 132 26 0 chr6 51967269 51967307 -97549730 + PB1D9 SINE Alu 1 39 -81 7 981 693 132 16 0 chr6 51967309 51967430 -97549607 + Lx LINE L1 6528 6650 -4 7 981 651 331 114 30 chr6 51967735 51968034 -97549003 - MLT1F1 LTR MaLR -61 508 185 7 981 672 299 57 71 chr6 51969022 51969083 -97547954 + ORR1E LTR MaLR 1 55 -304 7 981 7215 97 12 14 chr6 51969083 51970108 -97546929 + RLTR13D5 LTR ERVK 1 1023 0 7 981 672 265 93 53 chr6 51970108 51970388 -97546649 + ORR1E LTR MaLR 56 370 -9 7 981 273 318 90 15 chr6 51970930 51971064 -97545973 + B1F SINE Alu 1 144 -5 7 981 333 239 15 0 chr6 51971078 51971145 -97545892 + ID4_ SINE ID 3 70 -13 7 981 280 228 18 0 chr6 51971097 51971154 -97545883 + tRNA-Thr-ACY tRNA tRNA 19 76 -1 7 981 234 0 0 0 chr6 51972393 51972419 -97544618 + (G)n Simple_repeat Simple_repeat 1 26 0 7 981 258 284 0 0 chr6 51973073 51973140 -97543897 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 981 374 188 0 0 chr6 51973249 51973318 -97543719 + ID4 SINE ID 6 74 -9 7 981 320 240 0 26 chr6 51973250 51973327 -97543710 + tRNA-Ala-GCA tRNA tRNA 1 75 0 7 981 325 219 55 0 chr6 51974339 51974412 -97542625 + ID4_ SINE ID 1 77 -6 7 981 255 61 0 0 chr6 51974429 51974462 -97542575 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 7 981 284 304 100 94 chr6 51975476 51975511 -97541526 - RSINE1 SINE B4 -1 164 136 7 981 374 0 22 0 chr6 51975511 51975557 -97541480 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 981 284 304 100 94 chr6 51975557 51975681 -97541356 - RSINE1 SINE B4 -30 135 4 7 981 396 0 0 0 chr6 51975741 51975785 -97541252 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 981 445 276 9 0 chr6 51976024 51976129 -97540908 - PB1D10 SINE Alu -11 106 1 7 981 259 324 199 55 chr6 51976159 51976466 -97540571 - MLT1J LTR MaLR -73 439 89 7 981 1070 180 25 15 chr6 51977282 51977485 -97539552 - B3 SINE B2 -10 206 2 7 981 598 255 34 7 chr6 51977717 51977863 -97539174 + B3A SINE B2 2 151 -47 7 981 844 264 59 25 chr6 51978034 51978356 -97538681 - Lx7 LINE L1 -425 7271 6939 7 981 357 229 32 29 chr6 51978357 51978636 -97538401 + GA-rich Low_complexity Low_complexity 1 279 0 7 981 331 207 98 0 chr6 51978643 51978725 -97538312 - Lx7 LINE L1 -739 6957 6868 7 981 28 0 0 0 chr6 51978828 51978856 -97538181 + AT_rich Low_complexity Low_complexity 1 28 0 7 981 279 219 0 45 chr6 51978856 51978923 -97538114 - B3 SINE B2 -7 209 146 7 981 223 250 19 0 chr6 51979678 51979730 -97537307 - ID4 SINE ID -29 54 2 7 981 343 173 213 0 chr6 51979772 51979847 -97537190 + RSINE1 SINE B4 4 94 -71 7 981 342 0 0 0 chr6 51979860 51979898 -97537139 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 981 27 73 0 0 chr6 51979934 51979989 -97537048 + AT_rich Low_complexity Low_complexity 1 55 0 7 981 272 284 0 15 chr6 51982924 51982992 -97534045 + ID4_ SINE ID 4 70 -13 7 981 490 214 111 0 chr6 51983191 51983308 -97533729 - B1F SINE Alu -19 130 1 7 981 1882 127 25 0 chr6 51983622 51983936 -97533101 + RLTR15 LTR ERVK 1 322 -37 7 981 423 375 0 0 chr6 51984063 51984183 -97532854 + PB1 SINE Alu 1 120 -7 7 981 252 0 0 0 chr6 51984395 51984423 -97532614 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 981 353 288 195 27 chr6 51984570 51984848 -97532189 - MLT1J LTR MaLR -2 510 155 7 981 22 70 0 0 chr6 51985727 51985770 -97531267 + AT_rich Low_complexity Low_complexity 1 43 0 7 981 382 245 0 11 chr6 51986095 51986190 -97530847 + PB1D10 SINE Alu 15 108 -9 7 981 896 179 114 0 chr6 51986199 51986383 -97530654 + B3 SINE B2 2 206 -10 7 981 1407 149 14 0 chr6 51986669 51986891 -97530146 - URR1B DNA MER1_type 0 225 1 7 981 358 306 208 57 chr6 51987883 51988512 -97528525 - HAL1 LINE L1 -4 2503 1781 7 981 312 252 21 97 chr6 51988514 51988659 -97528378 - BC1_Mm scRNA scRNA -13 139 6 7 981 272 27 0 26 chr6 51988689 51988727 -97528310 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 981 523 219 35 0 chr6 51988727 51988841 -97528196 - RSINE1 SINE B4 -45 120 3 7 981 495 258 92 7 chr6 51989319 51989471 -97527566 + LTR40a LTR ERVL 1 165 -354 7 981 1227 188 4 8 chr6 51989620 51989872 -97527165 - L1_Mur3 LINE L1 -1077 4803 4553 7 981 329 322 83 41 chr6 51990055 51990290 -97526747 + MIRb SINE MIR 15 270 -6 7 981 1059 265 101 3 chr6 51990324 51990669 -97526368 - MTE2b LTR MaLR 0 379 1 7 981 427 191 16 132 chr6 51990708 51990829 -97526208 + MT2B LTR ERVL 151 257 -344 7 981 907 109 7 93 chr6 51990735 51990886 -97526151 + B1_Mur2 SINE Alu 11 148 -1 7 981 394 59 0 56 chr6 51990886 51990958 -97526079 + (TAAA)n Simple_repeat Simple_repeat 1 68 0 7 981 460 322 26 89 chr6 51990970 51991010 -97526027 + B3A SINE B2 2 32 -166 7 981 2051 55 15 0 chr6 51991010 51991283 -97525754 + L1_Mus3 LINE L1 6362 6638 0 7 981 673 301 12 7 chr6 51991283 51991451 -97525586 + B3 SINE B2 29 196 -20 7 981 387 0 0 0 chr6 51991452 51991495 -97525542 + (TAA)n Simple_repeat Simple_repeat 1 43 0 8 981 638 210 78 88 chr6 51993030 51993223 -97523814 - B3A SINE B2 0 198 8 8 981 610 238 144 18 chr6 51993929 51994096 -97522941 + ORR1D1 LTR MaLR 1 188 -186 8 981 887 138 0 7 chr6 51994097 51994250 -97522787 + (TCTA)n Simple_repeat Simple_repeat 4 155 0 8 981 754 182 56 12 chr6 51994250 51994411 -97522626 + ORR1D1 LTR MaLR 169 336 -38 8 981 1100 59 7 0 chr6 51994412 51994547 -97522490 + B1_Mm SINE Alu 2 137 -10 8 981 343 345 93 54 chr6 51994561 51994787 -97522250 + MLT1H-int LTR MaLR 63 302 -1107 8 981 279 0 0 0 chr6 51994787 51994818 -97522219 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 981 343 345 93 54 chr6 51994818 51994925 -97522112 + MLT1H-int LTR MaLR 303 409 -1000 8 981 393 333 74 35 chr6 51995043 51995301 -97521736 + B4A SINE B4 3 270 -22 8 981 239 381 136 69 chr6 51995372 51995792 -97521245 + MLT1H-int LTR MaLR 854 1301 -108 8 981 274 330 11 21 chr6 51995820 51995913 -97521124 + L2a LINE L2 3312 3403 -23 8 981 196 240 0 0 chr6 51996064 51996114 -97520923 - MIR SINE MIR -74 134 85 8 981 437 192 61 0 chr6 51996375 51996472 -97520565 - B1F SINE Alu -18 109 1 8 981 220 333 108 8 chr6 51996472 51996505 -97520532 - B4 SINE B4 -99 193 51 8 981 23 0 0 0 chr6 51997576 51997599 -97519438 + AT_rich Low_complexity Low_complexity 1 23 0 8 981 248 196 20 0 chr6 51997774 51997825 -97519212 - MTE2b LTR MaLR -14 365 314 8 981 708 138 0 0 chr6 51997825 51997941 -97519096 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 8 981 385 194 28 0 chr6 51997956 51998028 -97519009 - MTE2b LTR MaLR -104 275 202 8 981 691 247 28 35 chr6 51998022 51998228 -97518809 + B3 SINE B2 9 188 -7 8 981 182 37 37 0 chr6 51998310 51998337 -97518700 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 981 350 282 128 118 chr6 51998343 51998407 -97518630 - B4 SINE B4 0 292 216 8 981 2380 56 3 3 chr6 51998407 51998712 -97518325 - L1_Mus1 LINE L1 0 6567 6263 8 981 350 282 128 118 chr6 51998712 51998936 -97518101 - B4 SINE B4 -77 215 1 8 981 493 211 128 0 chr6 51998953 51999056 -97517981 - MTE2b LTR MaLR -229 150 31 8 981 728 83 0 9 chr6 51999056 51999166 -97517871 + (TCTA)n Simple_repeat Simple_repeat 3 111 0 8 981 493 211 128 0 chr6 51999166 51999195 -97517842 - MTE2b LTR MaLR -349 30 2 8 981 590 247 0 90 chr6 51999752 51999930 -97517107 + RSINE1 SINE B4 4 165 0 8 981 1218 184 9 0 chr6 52001057 52001280 -97515757 - URR1A DNA MER1_type 0 226 2 1 981 650 256 0 0 chr6 52001372 52001501 -97515536 - RSINE1 SINE B4 -35 130 2 2 981 549 0 0 0 chr6 52001832 52001893 -97515144 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 981 884 142 8 0 chr6 52001913 52002047 -97514990 - B1_Mus1 SINE Alu -13 135 1 4 981 380 188 37 2 chr6 52002084 52002188 -97514849 - MTD LTR MaLR -5 414 260 5 981 261 0 0 0 chr6 52002210 52002239 -97514798 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 981 615 27 0 0 chr6 52002239 52002311 -97514726 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 981 199 333 39 39 chr6 52002503 52002606 -97514431 - L4 LINE RTE -377 1652 1550 8 981 622 257 7 0 chr6 52003104 52003248 -97513789 + ID_B1 SINE B4 80 224 0 9 981 784 217 93 16 chr6 52005145 52005328 -97511709 + B3 SINE B2 1 197 -19 1 981 226 260 109 52 chr6 52005978 52006226 -97510811 - RMER17C LTR ERVK -5 405 144 1 981 267 31 0 0 chr6 52006252 52006284 -97510753 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 981 1595 139 227 21 chr6 52006500 52006645 -97510392 + RMER10B LTR ERVL 1 148 -250 1 981 203 0 37 0 chr6 52006645 52006672 -97510365 + (TCTCCC)n Simple_repeat Simple_repeat 6 33 0 1 981 1595 139 227 21 chr6 52006672 52006856 -97510181 + RMER10B LTR ERVL 149 398 0 1 981 185 325 61 45 chr6 52006904 52007036 -97510001 + MIR SINE MIR 69 202 -60 1 981 258 216 0 0 chr6 52007281 52007332 -97509705 + PB1D10 SINE Alu 6 56 -61 1 981 985 136 6 11 chr6 52008795 52008973 -97508064 + GA-rich Low_complexity Low_complexity 2 178 0 1 981 919 275 17 50 chr6 52009999 52010301 -97506736 + B4 SINE B4 1 292 0 1 981 326 272 12 0 chr6 52011126 52011207 -97505830 - B4A SINE B4 -91 201 120 1 981 216 0 0 0 chr6 52012804 52012828 -97504209 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 981 207 133 0 0 chr6 52012828 52012873 -97504164 + (TTTTTG)n Simple_repeat Simple_repeat 6 50 0 2 981 207 0 0 0 chr6 52012878 52012901 -97504136 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 2 981 1146 82 0 0 chr6 52012901 52013042 -97503995 - B1_Mus2 SINE Alu -5 142 2 2 981 318 231 18 55 chr6 52013185 52013295 -97503742 + PB1D9 SINE Alu 5 110 -10 2 981 180 0 0 0 chr6 52013297 52013317 -97503720 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 981 1033 133 200 0 chr6 52013331 52013511 -97503526 + B3 SINE B2 1 216 0 2 981 225 0 0 0 chr6 52013803 52013828 -97503209 + (GGA)n Simple_repeat Simple_repeat 1 25 0 2 981 309 155 0 0 chr6 52015397 52015455 -97501582 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 981 707 279 88 27 chr6 52015477 52015738 -97501299 - B4A SINE B4 -14 278 2 2 981 705 256 42 0 chr6 52015777 52015968 -97501069 - ID_B1 SINE B4 -6 218 20 3 981 1219 41 7 0 chr6 52016096 52016242 -97500795 - B1_Mus2 SINE Alu 0 147 1 3 981 253 111 0 0 chr6 52016348 52016384 -97500653 - L1M1 LINE L1 -404 5896 5861 3 981 778 189 8 0 chr6 52016512 52016644 -97500393 + B1_Mur1 SINE Alu 2 134 -15 3 981 756 33 0 0 chr6 52016644 52016735 -97500302 + (GGAA)n Simple_repeat Simple_repeat 1 91 0 3 981 249 204 0 18 chr6 52016735 52016790 -97500247 + GA-rich Low_complexity Low_complexity 4 57 0 3 981 200 59 29 0 chr6 52018088 52018122 -97498915 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 981 627 196 65 0 chr6 52018186 52018324 -97498713 + B1_Mur2 SINE Alu 3 149 0 3 981 285 29 0 0 chr6 52018324 52018358 -97498679 + (A)n Simple_repeat Simple_repeat 1 34 0 3 981 243 314 10 10 chr6 52019232 52019335 -97497702 + MLT1J LTR MaLR 410 512 0 3 981 1173 43 0 14 chr6 52019344 52019486 -97497551 + B1_Mus2 SINE Alu 1 140 -7 4 981 429 70 0 0 chr6 52019486 52019543 -97497494 + (CATA)n Simple_repeat Simple_repeat 4 60 0 4 981 333 310 91 5 chr6 52020972 52021170 -97495867 + Lx8 LINE L1 7259 7473 0 4 981 276 100 0 0 chr6 52021171 52021211 -97495826 + (TA)n Simple_repeat Simple_repeat 1 40 0 4 981 407 336 58 58 chr6 52021278 52021572 -97495465 + HAL1 LINE L1 413 706 -1801 4 981 885 143 8 0 chr6 52021829 52021962 -97495075 + B1_Mus1 SINE Alu 1 134 -14 4 981 382 218 13 0 chr6 52022078 52022156 -97494881 + ID4_ SINE ID 2 80 -3 4 981 500 289 21 7 chr6 52022203 52022346 -97494691 + RSINE1 SINE B4 19 163 -2 4 981 753 224 60 28 chr6 52022378 52022594 -97494443 + ID_B1 SINE B4 1 223 -1 4 981 271 301 0 0 chr6 52022594 52022667 -97494370 + HAL1 LINE L1 1485 1557 -950 4 981 290 207 48 24 chr6 52022767 52022851 -97494186 + B1F1 SINE Alu 9 94 -55 4 981 247 295 0 0 chr6 52022852 52022913 -97494124 + GA-rich Low_complexity Low_complexity 6 66 0 5 981 229 250 19 0 chr6 52022976 52023028 -97494009 + ID_B1 SINE B4 39 91 -133 5 981 608 284 73 62 chr6 52023184 52023473 -97493564 + MER58B DNA MER1_type 8 299 -42 5 981 243 300 80 96 chr6 52023664 52023977 -97493060 + HAL1 LINE L1 2008 2315 -192 4 981 2428 167 44 153 chr6 52024232 52024918 -97492119 + RMER19C LTR ERVK 1 611 0 5 981 1085 197 29 19 chr6 52025439 52025646 -97491391 + B3 SINE B2 2 210 -6 5 981 234 0 0 0 chr6 52025840 52025866 -97491171 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 981 180 0 0 0 chr6 52025866 52025885 -97491152 + (CG)n Simple_repeat Simple_repeat 2 21 0 5 981 639 288 25 0 chr6 52027365 52027525 -97489512 - RSINE1 SINE B4 0 165 2 5 981 276 120 0 0 chr6 52027867 52027917 -97489120 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 981 375 141 0 0 chr6 52028958 52029022 -97488015 + (A)n Simple_repeat Simple_repeat 1 64 0 5 981 461 83 0 178 chr6 52030070 52030289 -97486748 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 981 431 179 7 20 chr6 52030393 52030541 -97486496 + (TG)n Simple_repeat Simple_repeat 2 147 0 6 981 216 0 0 0 chr6 52030611 52030635 -97486402 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 981 314 91 0 0 chr6 52030653 52030697 -97486340 - HAL1-3A_ME LINE L1 -840 2018 1975 6 981 324 0 0 0 chr6 52030764 52030800 -97486237 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 981 705 246 11 22 chr6 52030871 52031054 -97485983 - B3A SINE B2 -16 182 2 6 981 767 216 0 35 chr6 52031487 52031631 -97485406 + B1_Mur2 SINE Alu 2 140 -9 6 981 540 55 88 0 chr6 52031668 52031759 -97485278 - L1Md_F3 LINE L1 0 6584 6486 6 981 905 215 19 10 chr6 52031784 52031991 -97485046 - B3 SINE B2 0 216 8 6 981 784 220 143 0 chr6 52032750 52032932 -97484105 + B3 SINE B2 1 208 -8 6 981 422 308 0 0 chr6 52033072 52033176 -97483861 + RSINE1 SINE B4 5 108 -57 7 981 1019 83 18 12 chr6 52033238 52033408 -97483629 + (TAGA)n Simple_repeat Simple_repeat 2 172 0 7 981 2212 91 0 0 chr6 52033417 52033736 -97483301 + ORR1A2 LTR MaLR 3 321 -6 7 981 383 0 21 0 chr6 52033736 52033783 -97483254 + (CAGA)n Simple_repeat Simple_repeat 1 48 0 7 981 266 333 23 11 chr6 52033935 52034023 -97483014 + ID4_ SINE ID 9 97 -55 7 981 273 95 0 0 chr6 52034935 52034977 -97482060 - MLT1D LTR MaLR -18 487 446 7 981 662 281 135 42 chr6 52034993 52035305 -97481732 + MLT1A0 LTR MaLR 25 365 0 7 122 644 280 89 56 chr6 52035305 52035714 -97481323 - MLT1D LTR MaLR -58 447 20 7 982 222 315 13 40 chr6 52036054 52036130 -97480907 + MIRb SINE MIR 174 247 -21 7 982 1186 171 5 33 chr6 52037199 52037411 -97479626 + B3 SINE B2 4 209 -7 7 982 946 137 0 33 chr6 52038947 52039098 -97477939 - B1_Mus2 SINE Alu -1 146 1 7 982 1158 43 0 7 chr6 52039445 52039586 -97477451 + B1_Mus2 SINE Alu 1 140 -7 8 982 261 0 0 0 chr6 52039590 52039619 -97477418 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 982 591 271 46 35 chr6 52039711 52039971 -97477066 + L1MC3 LINE L1 6767 7029 -756 8 982 336 24 0 0 chr6 52039971 52040012 -97477025 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 8 982 337 292 53 0 chr6 52040012 52040125 -97476912 + RSINE1 SINE B4 46 164 -1 8 982 441 174 0 0 chr6 52040126 52040224 -97476813 + (CA)n Simple_repeat Simple_repeat 1 98 0 8 982 210 143 0 0 chr6 52040474 52040509 -97476528 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 8 982 379 265 150 0 chr6 52042211 52042358 -97474679 + MER2 DNA MER2_type 95 263 -82 8 982 490 277 57 108 chr6 52042588 52042820 -97474217 - ID_B1 SINE B4 0 224 8 8 982 21 57 0 0 chr6 52043543 52043578 -97473459 + AT_rich Low_complexity Low_complexity 1 35 0 8 982 223 250 0 0 chr6 52044444 52044500 -97472537 + CT-rich Low_complexity Low_complexity 2 57 0 9 982 416 208 0 45 chr6 52044573 52044684 -97472353 - ID_B1 SINE B4 0 224 119 9 982 207 0 0 0 chr6 52044851 52044874 -97472163 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 9 982 482 246 24 8 chr6 52045066 52045193 -97471844 + B1_Mur2 SINE Alu 19 147 -2 9 982 563 342 47 13 chr6 52045337 52045571 -97471466 + Arthur1 DNA Tip100 92 333 -3614 9 982 763 247 13 0 chr6 52045605 52045759 -97471278 - RSINE1 SINE B4 0 165 10 9 982 235 406 35 14 chr6 52045757 52045902 -97471135 + Arthur1 DNA Tip100 316 463 -3484 9 982 195 321 23 23 chr6 52045989 52046075 -97470962 + L2c LINE L2 3070 3155 -232 9 982 633 202 97 0 chr6 52047261 52047385 -97469652 + B1_Mus2 SINE Alu 4 139 -8 9 982 201 74 0 0 chr6 52047385 52047412 -97469625 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 982 226 163 0 44 chr6 52047475 52047520 -97469517 + RLTR25A LTR ERVK 515 557 -546 9 982 486 186 29 10 chr6 52047480 52047583 -97469454 + B1_Mur4 SINE Alu 45 149 -1 1 982 441 252 117 8 chr6 52047620 52047748 -97469289 + RSINE1 SINE B4 3 144 -21 1 982 22 56 0 0 chr6 52048108 52048144 -97468893 + AT_rich Low_complexity Low_complexity 1 36 0 1 982 180 0 0 0 chr6 52048278 52048298 -97468739 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 1 982 254 172 45 45 chr6 52048468 52048535 -97468502 + MTC LTR MaLR 5 71 -350 1 982 408 125 0 0 chr6 52048625 52048689 -97468348 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 982 528 210 8 16 chr6 52048735 52048861 -97468176 + MTD LTR MaLR 281 405 -14 1 982 219 224 60 0 chr6 52048930 52048997 -97468040 + RSINE1 SINE B4 64 134 -31 1 982 232 114 0 0 chr6 52049223 52049267 -97467770 - B3 SINE B2 -6 210 167 1 982 1181 61 0 0 chr6 52049597 52049744 -97467293 - B1_Mus1 SINE Alu 0 148 2 1 982 210 264 26 53 chr6 52049998 52050074 -97466963 + ID SINE ID 7 80 -144 1 982 1592 47 16 0 chr6 52050188 52050379 -97466658 + B2_Mm2 SINE B2 2 195 0 1 982 537 16 0 0 chr6 52050424 52050486 -97466551 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 1 982 990 90 15 0 chr6 52050603 52050736 -97466301 + B1_Mus1 SINE Alu 2 136 -12 1 982 210 37 0 0 chr6 52050738 52050765 -97466272 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 982 396 0 0 0 chr6 52053051 52053095 -97463942 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 982 319 189 41 82 chr6 52053120 52053218 -97463819 - PB1D10 SINE Alu -8 109 16 1 982 813 238 29 14 chr6 52053495 52053704 -97463333 - B3 SINE B2 0 216 5 1 982 193 250 137 14 chr6 52054541 52054614 -97462423 + L2 LINE L2 2553 2634 -785 1 982 180 0 0 0 chr6 52054700 52054720 -97462317 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 982 984 72 7 0 chr6 52054729 52054868 -97462169 - B1_Mus1 SINE Alu 0 148 9 1 982 450 253 44 76 chr6 52054731 52054889 -97462148 - B4 SINE B4 -69 223 71 1 982 28 0 0 0 chr6 52054995 52055023 -97462014 + AT_rich Low_complexity Low_complexity 1 28 0 1 982 360 0 0 0 chr6 52056603 52056643 -97460394 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 982 405 259 103 69 chr6 52056877 52057080 -97459957 + B3 SINE B2 6 215 -1 1 982 645 250 15 0 chr6 52057304 52057436 -97459601 + B1_Mur2 SINE Alu 1 134 -15 1 982 441 0 0 0 chr6 52057436 52057485 -97459552 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 1 982 754 212 137 5 chr6 52057495 52057685 -97459352 + B3 SINE B2 2 216 0 1 982 492 264 74 0 chr6 52057801 52057922 -97459115 + RSINE1 SINE B4 3 132 -33 1 982 1091 73 20 0 chr6 52057954 52058105 -97458932 + B2_Mm2 SINE B2 28 181 -14 1 982 593 204 21 55 chr6 52059062 52059207 -97457830 - B1_Mur1 SINE Alu 0 149 10 1 982 771 180 65 0 chr6 52059260 52059399 -97457638 + B1_Mur2 SINE Alu 1 148 -1 1 982 351 0 0 0 chr6 52059399 52059438 -97457599 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1 982 1099 105 0 55 chr6 52059690 52059752 -97457285 - B2_Mm2 SINE B2 -23 172 112 1 982 1493 46 25 0 chr6 52059752 52059949 -97457088 + L1Md_F3 LINE L1 6383 6584 0 1 982 1099 105 0 55 chr6 52059949 52060067 -97456970 - B2_Mm2 SINE B2 -84 111 2 1 982 488 290 79 37 chr6 52060072 52060262 -97456775 - B3A SINE B2 0 198 1 1 982 1731 151 24 71 chr6 52060336 52060757 -97456280 - RMER17C LTR ERVK -9 401 1 1 982 355 229 12 0 chr6 52061188 52061271 -97455766 + B3A SINE B2 68 151 -47 1 982 459 35 0 0 chr6 52061271 52061328 -97455709 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 982 410 254 0 164 chr6 52061579 52061725 -97455312 + RSINE1 SINE B4 3 124 -41 1 982 192 77 0 0 chr6 52061909 52061935 -97455102 + (T)n Simple_repeat Simple_repeat 1 26 0 1 982 284 260 93 28 chr6 52061936 52062043 -97454994 + PB1D10 SINE Alu 4 117 0 1 982 414 263 25 17 chr6 52062329 52062449 -97454588 - ID_B1 SINE B4 0 224 104 1 982 275 299 86 21 chr6 52062449 52062469 -97454568 - B1F1 SINE Alu 0 149 1 1 982 251 224 0 17 chr6 52062484 52062512 -97454525 + polypurine Low_complexity Low_complexity 1 28 0 1 982 1284 11 35 0 chr6 52062512 52062686 -97454351 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 982 251 224 0 17 chr6 52062686 52062716 -97454321 + polypurine Low_complexity Low_complexity 29 57 0 1 982 21 36 0 0 chr6 52064190 52064218 -97452819 + AT_rich Low_complexity Low_complexity 1 28 0 1 982 946 201 82 10 chr6 52064224 52064420 -97452617 - B3 SINE B2 -5 211 2 1 982 2270 189 78 11 chr6 52064513 52064946 -97452091 + Lx5 LINE L1 6588 7049 -1 1 982 207 100 0 0 chr6 52065089 52065119 -97451918 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 982 703 139 0 15 chr6 52065128 52065259 -97451778 + GA-rich Low_complexity Low_complexity 3 131 0 1 982 279 280 118 20 chr6 52065847 52066000 -97451037 + MIRc SINE MIR 91 258 -10 1 982 342 297 40 66 chr6 52066722 52066949 -97450088 + MIR SINE MIR 40 260 -2 1 982 398 228 94 148 chr6 52067127 52067276 -97449761 - RSINE1 SINE B4 -21 144 4 1 982 228 318 85 47 chr6 52067355 52067566 -97449471 + MIRb SINE MIR 50 268 0 1 982 333 0 0 0 chr6 52067641 52067678 -97449359 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 982 584 270 118 12 chr6 52067684 52067939 -97449098 - B4A SINE B4 -6 286 5 1 982 332 134 0 43 chr6 52068029 52068099 -97448938 + GA-rich Low_complexity Low_complexity 2 68 0 1 982 506 0 47 0 chr6 52068101 52068165 -97448872 + (GAAAA)n Simple_repeat Simple_repeat 3 69 0 1 982 324 0 0 0 chr6 52068282 52068318 -97448719 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 982 23 0 0 0 chr6 52069045 52069068 -97447969 + AT_rich Low_complexity Low_complexity 1 23 0 1 982 210 71 0 0 chr6 52069274 52069302 -97447735 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1 982 194 62 31 0 chr6 52069727 52069759 -97447278 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 982 454 91 0 25 chr6 52069780 52069859 -97447178 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 982 775 203 56 25 chr6 52070018 52070215 -97446822 - B3 SINE B2 -11 205 3 1 982 319 299 0 0 chr6 52070667 52070744 -97446293 + ID4 SINE ID 5 81 -2 1 982 551 219 59 128 chr6 52070943 52071110 -97445927 + B3A SINE B2 2 161 -34 1 982 291 130 0 0 chr6 52071110 52071164 -97445873 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 982 420 219 59 128 chr6 52071164 52071200 -97445837 + B2_Mm2 SINE B2 162 191 -4 1 982 236 152 32 32 chr6 52071568 52071663 -97445374 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 1 982 670 198 0 0 chr6 52071701 52071812 -97445225 - B1F2 SINE Alu -35 114 4 1 982 383 191 0 147 chr6 52071812 52071829 -97445208 - MT2B LTR ERVL -336 264 156 1 982 744 247 12 24 chr6 52071954 52072120 -97444917 - B4 SINE B4 0 292 129 1 982 1158 82 0 0 chr6 52072127 52072274 -97444763 - B1_Mm SINE Alu 0 147 1 1 982 719 105 67 12 chr6 52072326 52072490 -97444547 + CT-rich Low_complexity Low_complexity 2 174 0 1 982 772 183 0 17 chr6 52072479 52072657 -97444380 + T-rich Low_complexity Low_complexity 2 176 0 1 982 1645 37 0 0 chr6 52072740 52072930 -97444107 - B2_Mm1a SINE B2 -3 190 1 1 982 2298 102 135 13 chr6 52072937 52073316 -97443721 - Lx2A LINE L1 -1 7007 6583 1 982 237 83 0 0 chr6 52073414 52073450 -97443587 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 982 1994 239 110 41 chr6 52073567 52074196 -97442841 - Lx8 LINE L1 -25 7448 6777 1 982 693 297 81 41 chr6 52074204 52074499 -97442538 - MLT1A0 LTR MaLR -58 307 1 1 982 430 245 109 63 chr6 52074620 52074794 -97442243 + B3A SINE B2 1 182 -16 1 982 343 149 70 25 chr6 52074868 52075026 -97442011 + (CATATA)n Simple_repeat Simple_repeat 1 165 0 1 982 327 257 0 0 chr6 52075062 52075163 -97441874 + (TA)n Simple_repeat Simple_repeat 1 101 0 1 982 21 0 0 0 chr6 52075166 52075187 -97441850 + AT_rich Low_complexity Low_complexity 1 21 0 1 982 993 187 34 0 chr6 52075453 52075662 -97441375 + B3 SINE B2 1 216 0 1 982 572 235 17 0 chr6 52075814 52075929 -97441108 - PB1D10 SINE Alu 0 117 1 1 982 252 337 47 0 chr6 52075852 52075938 -97441099 - B4A SINE B4 -126 166 77 1 982 204 40 0 0 chr6 52076427 52076452 -97440585 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1 982 512 294 0 8 chr6 52076586 52076713 -97440324 + ID_B1 SINE B4 3 128 -96 1 982 220 211 28 0 chr6 52076713 52076784 -97440253 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 982 243 212 164 15 chr6 52076820 52076887 -97440150 + ID_B1 SINE B4 128 204 -20 1 982 1948 212 22 171 chr6 52076922 52077640 -97439397 - RMER19C LTR ERVK 0 611 1 1 982 390 21 0 0 chr6 52077640 52077687 -97439350 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 982 201 39 0 0 chr6 52077687 52077712 -97439325 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 982 445 191 43 9 chr6 52077713 52077829 -97439208 + MTD LTR MaLR 300 419 0 1 982 953 137 36 71 chr6 52077996 52078192 -97438845 + B2_Mm2 SINE B2 1 189 -6 1 982 641 264 10 36 chr6 52078766 52078959 -97438078 + B3 SINE B2 14 201 -15 1 982 384 259 0 0 chr6 52078951 52079036 -97438001 + PB1D9 SINE Alu 26 110 -10 1 982 218 173 19 19 chr6 52079036 52079089 -97437948 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 1 982 377 273 0 0 chr6 52079091 52079168 -97437869 + ID4 SINE ID 2 78 -5 1 982 378 0 0 0 chr6 52079305 52079347 -97437690 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 982 347 169 180 67 chr6 52079367 52079456 -97437581 + PB1D9 SINE Alu 20 118 -2 2 982 225 140 40 0 chr6 52079549 52079599 -97437438 + A-rich Low_complexity Low_complexity 2 53 0 2 982 954 269 58 7 chr6 52080692 52080984 -97436053 + Tigger7 DNA MER2_type 1 307 -2184 2 982 526 300 43 82 chr6 52081021 52081193 -97435844 + Tigger7 DNA MER2_type 2178 2353 -138 2 982 248 250 12 50 chr6 52081193 52081273 -97435764 - ID4 SINE ID -4 79 3 2 982 526 300 43 82 chr6 52081273 52081405 -97435632 + Tigger7 DNA MER2_type 2354 2470 -21 2 982 230 213 0 60 chr6 52081407 52081450 -97435587 + PB1D9 SINE Alu 1 41 -79 2 982 1536 22 0 0 chr6 52081450 52081630 -97435407 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 982 234 0 0 0 chr6 52081708 52081734 -97435303 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 982 335 353 29 6 chr6 52082374 52082548 -97434489 + L1ME4a LINE L1 5721 5898 -226 2 982 200 139 0 27 chr6 52082641 52082678 -97434359 + A-rich Low_complexity Low_complexity 5 40 0 2 982 1073 78 7 0 chr6 52082820 52082973 -97434064 + (TC)n Simple_repeat Simple_repeat 2 155 0 2 982 442 295 23 15 chr6 52083253 52083384 -97433653 - B1F SINE Alu -8 141 10 2 982 313 296 0 0 chr6 52083495 52083566 -97433471 - ID4_ SINE ID -10 73 3 2 982 661 147 20 26 chr6 52083618 52083752 -97433285 - B1_Mus2 SINE Alu 0 148 1 2 982 385 214 40 30 chr6 52083796 52083897 -97433140 - B1F SINE Alu 0 149 48 2 982 1110 70 14 14 chr6 52084385 52084531 -97432506 + B1_Mm SINE Alu 2 147 0 2 982 252 86 0 0 chr6 52084531 52084566 -97432471 + (A)n Simple_repeat Simple_repeat 1 35 0 2 982 423 282 107 0 chr6 52084635 52084766 -97432271 + RSINE1 SINE B4 9 153 -12 2 982 492 207 8 72 chr6 52084813 52084938 -97432099 + PB1D9 SINE Alu 2 118 -2 2 982 273 314 69 19 chr6 52085422 52085581 -97431456 - Charlie13a DNA Charlie -551 963 797 2 982 1049 233 18 0 chr6 52085840 52086059 -97430978 + ID_B1 SINE B4 2 224 0 2 982 4362 76 18 27 chr6 52086060 52086682 -97430355 + MusHAL1 LINE L1 992 1607 -1105 2 982 1228 54 0 0 chr6 52087247 52087394 -97429643 + B1_Mus1 SINE Alu 2 148 0 2 982 261 278 40 40 chr6 52087690 52087791 -97429246 + MTEa LTR MaLR 279 379 0 2 982 516 162 0 0 chr6 52088118 52088223 -97428814 + A-rich Low_complexity Low_complexity 1 105 0 2 982 599 180 0 18 chr6 52089496 52089609 -97427428 - PB1D9 SINE Alu -8 112 2 2 982 552 205 62 43 chr6 52089630 52089799 -97427238 - B2_Mm1t SINE B2 -6 210 33 2 982 1193 61 0 0 chr6 52089799 52089946 -97427091 + B1_Mus2 SINE Alu 1 147 0 2 982 220 125 25 0 chr6 52089949 52089989 -97427048 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 2 982 275 109 0 0 chr6 52089992 52090038 -97426999 - B2_Mm2 SINE B2 -149 46 1 2 982 749 152 0 164 chr6 52090860 52091025 -97426012 + B1_Mur4 SINE Alu 2 139 -11 2 982 582 15 0 0 chr6 52091025 52091092 -97425945 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 2 982 456 230 90 0 chr6 52091106 52091206 -97425831 + PB1D10 SINE Alu 3 111 -6 2 982 300 271 131 0 chr6 52091210 52091317 -97425720 + PB1 SINE Alu 1 121 -6 2 982 22 0 0 0 chr6 52093025 52093047 -97423990 + AT_rich Low_complexity Low_complexity 1 22 0 2 982 675 303 39 0 chr6 52093078 52093286 -97423751 + ID_B1 SINE B4 9 224 0 2 982 1259 109 5 58 chr6 52093288 52093493 -97423544 + B2_Mm2 SINE B2 2 195 0 2 982 261 57 0 0 chr6 52093496 52093531 -97423506 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 2 982 596 186 88 0 chr6 52093696 52093809 -97423228 + B1_Mur2 SINE Alu 15 137 -12 2 982 227 160 0 39 chr6 52093810 52093862 -97423175 + GA-rich Low_complexity Low_complexity 1 50 0 2 982 356 82 16 0 chr6 52094029 52094090 -97422947 + (GAAAA)n Simple_repeat Simple_repeat 4 65 0 2 982 1128 60 43 20 chr6 52094124 52094524 -97422513 + (TAGA)n Simple_repeat Simple_repeat 1 409 0 2 982 297 0 0 0 chr6 52094524 52094557 -97422480 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 982 198 0 0 0 chr6 52095002 52095024 -97422013 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 982 555 236 0 9 chr6 52095751 52095858 -97421179 + polypurine Low_complexity Low_complexity 5 110 0 2 982 808 154 23 6 chr6 52095858 52096034 -97421003 + G-rich Low_complexity Low_complexity 1 179 0 2 982 257 221 0 14 chr6 52096046 52096115 -97420922 + G-rich Low_complexity Low_complexity 3 70 0 2 982 624 247 100 11 chr6 52096124 52096304 -97420733 + B3A SINE B2 2 197 -1 2 982 28 0 0 0 chr6 52096305 52096333 -97420704 + AT_rich Low_complexity Low_complexity 1 28 0 2 982 657 272 25 47 chr6 52097294 52097529 -97419508 + B4A SINE B4 59 288 -4 2 982 457 275 65 77 chr6 52097800 52098048 -97418989 - B4 SINE B4 -6 286 42 2 982 597 169 178 0 chr6 52098222 52098340 -97418697 + B1_Mur2 SINE Alu 1 139 -10 2 982 221 0 0 33 chr6 52098340 52098370 -97418667 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 982 1466 65 5 5 chr6 52098413 52098600 -97418437 + B2_Mm1t SINE B2 1 187 -6 2 982 332 306 16 16 chr6 52098696 52098822 -97418215 + MIR SINE MIR 89 214 -48 2 982 717 281 73 18 chr6 52099055 52099385 -97417652 + L1MA6 LINE L1 5909 6256 -44 2 982 707 108 0 24 chr6 52099410 52099552 -97417485 - B1_Mur4 SINE Alu -1 149 11 2 982 668 126 359 0 chr6 52099562 52099721 -97417316 - B3 SINE B2 0 216 1 2 982 433 233 86 33 chr6 52100056 52100207 -97416830 + ID_B1 SINE B4 65 223 -1 2 982 22 0 0 0 chr6 52101060 52101082 -97415955 + AT_rich Low_complexity Low_complexity 1 22 0 2 982 243 226 0 0 chr6 52101394 52101447 -97415590 + C-rich Low_complexity Low_complexity 1 53 0 2 982 315 0 0 0 chr6 52101943 52101978 -97415059 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 982 215 286 0 67 chr6 52104579 52104654 -97412383 + ID SINE ID 4 73 -151 2 982 225 94 0 0 chr6 52107302 52107334 -97409703 + (CACCAT)n Simple_repeat Simple_repeat 4 35 0 2 982 297 51 0 0 chr6 52107990 52108029 -97409008 + (TGG)n Simple_repeat Simple_repeat 1 39 0 2 982 207 0 0 0 chr6 52109107 52109130 -97407907 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 2 982 297 0 0 0 chr6 52111536 52111569 -97405468 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 982 252 0 0 0 chr6 52111797 52111825 -97405212 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 982 180 0 0 0 chr6 52111895 52111915 -97405122 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 982 635 57 11 0 chr6 52115362 52115450 -97401587 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 982 375 157 34 0 chr6 52115527 52115616 -97401421 + CT-rich Low_complexity Low_complexity 1 92 0 2 982 369 0 0 0 chr6 52116399 52116440 -97400597 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 982 202 300 11 11 chr6 52119803 52119894 -97397143 + A-rich Low_complexity Low_complexity 3 93 0 2 982 223 258 0 82 chr6 52122274 52122384 -97394653 + G-rich Low_complexity Low_complexity 5 105 0 2 982 468 0 0 0 chr6 52123277 52123329 -97393708 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 982 468 0 0 0 chr6 52123478 52123530 -97393507 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 982 405 0 0 0 chr6 52124346 52124391 -97392646 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 982 285 100 0 0 chr6 52125727 52125777 -97391260 + (CGGG)n Simple_repeat Simple_repeat 3 52 0 2 982 216 0 0 0 chr6 52125860 52125884 -97391153 + (TCCCC)n Simple_repeat Simple_repeat 1 24 0 2 982 22 0 0 0 chr6 52127716 52127738 -97389299 + AT_rich Low_complexity Low_complexity 1 22 0 2 982 213 94 0 0 chr6 52129988 52130020 -97387017 + (GGAGAA)n Simple_repeat Simple_repeat 1 32 0 2 982 22 0 0 0 chr6 52131714 52131736 -97385301 + AT_rich Low_complexity Low_complexity 1 22 0 2 982 240 35 0 0 chr6 52132037 52132066 -97384971 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 982 231 114 0 0 chr6 52132748 52132783 -97384254 + (CTG)n Simple_repeat Simple_repeat 1 35 0 2 982 298 220 0 109 chr6 52132798 52132890 -97384147 + ID4_ SINE ID 2 83 0 2 982 272 120 0 20 chr6 52135064 52135115 -97381922 + (TCC)n Simple_repeat Simple_repeat 1 50 0 2 982 186 43 0 0 chr6 52136525 52136548 -97380489 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 982 931 159 0 0 chr6 52136560 52136705 -97380332 - B1_Mus1 SINE Alu -1 147 3 2 982 183 205 0 0 chr6 52137091 52137130 -97379907 + GA-rich Low_complexity Low_complexity 1 39 0 2 982 369 0 0 0 chr6 52138095 52138136 -97378901 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 982 558 0 0 0 chr6 52138648 52138710 -97378327 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 982 405 0 0 0 chr6 52138765 52138810 -97378227 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 982 243 0 0 0 chr6 52139504 52139531 -97377506 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 982 230 246 14 28 chr6 52140704 52140775 -97376262 + GA-rich Low_complexity Low_complexity 1 70 0 2 982 21 82 0 0 chr6 52141121 52141170 -97375867 + GC_rich Low_complexity Low_complexity 1 49 0 2 982 31 58 0 0 chr6 52141331 52141383 -97375654 + GC_rich Low_complexity Low_complexity 1 52 0 2 982 186 156 0 0 chr6 52141778 52141823 -97375214 + C-rich Low_complexity Low_complexity 1 45 0 2 982 220 239 0 61 chr6 52141838 52141936 -97375101 + C-rich Low_complexity Low_complexity 2 93 0 2 982 480 35 0 0 chr6 52148045 52148103 -97368934 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 982 375 121 0 0 chr6 52150515 52150573 -97366464 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 982 246 105 0 0 chr6 52152257 52152295 -97364742 + (T)n Simple_repeat Simple_repeat 1 38 0 2 982 201 74 0 0 chr6 52156745 52156772 -97360265 + (GAAA)n Simple_repeat Simple_repeat 1 27 0 2 982 191 146 24 0 chr6 52157440 52157481 -97359556 + GA-rich Low_complexity Low_complexity 3 44 0 3 982 351 0 0 0 chr6 52157730 52157769 -97359268 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 982 450 0 0 0 chr6 52157907 52157957 -97359080 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 982 203 217 0 21 chr6 52157989 52158036 -97359001 + CT-rich Low_complexity Low_complexity 3 48 0 3 982 693 0 0 0 chr6 52158042 52158119 -97358918 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 3 982 26 0 0 0 chr6 52158843 52158869 -97358168 + GC_rich Low_complexity Low_complexity 1 26 0 3 982 209 135 27 0 chr6 52160910 52160947 -97356090 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 982 198 0 0 0 chr6 52163596 52163618 -97353419 + (A)n Simple_repeat Simple_repeat 1 22 0 3 982 22 35 0 0 chr6 52165040 52165069 -97351968 + AT_rich Low_complexity Low_complexity 1 29 0 3 982 324 92 15 44 chr6 52165548 52165616 -97351421 + CT-rich Low_complexity Low_complexity 2 67 0 3 982 306 132 0 0 chr6 52165718 52165771 -97351266 + (TCC)n Simple_repeat Simple_repeat 3 55 0 3 122 200 238 38 0 chr6 52166615 52166720 -97350317 + GA-rich Low_complexity Low_complexity 2 110 0 3 983 486 0 0 0 chr6 52171232 52171286 -97345751 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 983 270 0 0 0 chr6 52172731 52172761 -97344276 + (T)n Simple_repeat Simple_repeat 1 30 0 3 983 28 0 0 0 chr6 52173941 52173969 -97343068 + AT_rich Low_complexity Low_complexity 1 28 0 3 983 236 226 16 31 chr6 52174659 52174723 -97342314 + CT-rich Low_complexity Low_complexity 3 65 0 3 983 180 0 0 0 chr6 52174762 52174782 -97342255 + (T)n Simple_repeat Simple_repeat 1 20 0 3 983 201 195 0 0 chr6 52174841 52174882 -97342155 + CT-rich Low_complexity Low_complexity 1 41 0 3 983 26 30 0 0 chr6 52176853 52176886 -97340151 + GC_rich Low_complexity Low_complexity 1 33 0 3 983 287 349 23 8 chr6 52177347 52177480 -97339557 + CT-rich Low_complexity Low_complexity 1 135 0 3 983 28 48 0 0 chr6 52178274 52178316 -97338721 + AT_rich Low_complexity Low_complexity 1 42 0 3 983 235 191 0 31 chr6 52179486 52179551 -97337486 + A-rich Low_complexity Low_complexity 2 64 0 3 983 229 360 0 43 chr6 52180342 52180435 -97336602 + polypurine Low_complexity Low_complexity 4 92 0 3 983 213 65 0 0 chr6 52181551 52181582 -97335455 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 3 983 284 111 19 0 chr6 52182288 52182342 -97334695 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 983 219 69 0 0 chr6 52183899 52183928 -97333109 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 3 983 290 217 0 0 chr6 52184466 52184535 -97332502 + (CGG)n Simple_repeat Simple_repeat 2 70 0 3 983 198 0 0 0 chr6 52185735 52185757 -97331280 + (CCA)n Simple_repeat Simple_repeat 3 24 0 3 983 220 229 0 24 chr6 52186693 52186778 -97330259 + GA-rich Low_complexity Low_complexity 2 84 0 3 983 225 0 0 0 chr6 52187366 52187391 -97329646 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 983 23 54 0 0 chr6 52188603 52188640 -97328397 + AT_rich Low_complexity Low_complexity 1 37 0 3 983 23 0 0 0 chr6 52188979 52189002 -97328035 + AT_rich Low_complexity Low_complexity 1 23 0 3 983 21 0 0 0 chr6 52189411 52189432 -97327605 + AT_rich Low_complexity Low_complexity 1 21 0 3 983 32 26 0 0 chr6 52192291 52192330 -97324707 + AT_rich Low_complexity Low_complexity 1 39 0 3 983 495 0 0 0 chr6 52194317 52194372 -97322665 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 983 370 261 8 23 chr6 52195072 52195205 -97321832 + (CCG)n Simple_repeat Simple_repeat 3 133 0 3 983 693 88 0 0 chr6 52200478 52200580 -97316457 + (TCC)n Simple_repeat Simple_repeat 1 102 0 3 983 477 0 0 0 chr6 52201154 52201207 -97315830 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 983 276 30 0 0 chr6 52201692 52201725 -97315312 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 983 195 69 0 0 chr6 52204651 52204680 -97312357 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 983 672 171 124 0 chr6 52205054 52205183 -97311854 + B1_Mus2 SINE Alu 3 147 0 3 983 27 0 0 0 chr6 52205204 52205231 -97311806 + AT_rich Low_complexity Low_complexity 1 27 0 3 983 702 133 0 0 chr6 52205376 52205489 -97311548 + (GGGA)n Simple_repeat Simple_repeat 1 113 0 3 983 233 269 26 0 chr6 52206912 52207014 -97310023 + (TA)n Simple_repeat Simple_repeat 1 104 0 3 983 26 0 0 0 chr6 52210341 52210367 -97306670 + GC_rich Low_complexity Low_complexity 1 26 0 3 983 283 78 19 19 chr6 52210380 52210432 -97306605 + (CGG)n Simple_repeat Simple_repeat 3 54 0 3 983 27 0 0 0 chr6 52210521 52210548 -97306489 + GC_rich Low_complexity Low_complexity 1 27 0 3 983 242 73 0 24 chr6 52210616 52210658 -97306379 + (CCG)n Simple_repeat Simple_repeat 2 42 0 3 983 42 60 0 29 chr6 52210831 52210934 -97306103 + GC_rich Low_complexity Low_complexity 1 100 0 3 983 24 32 0 0 chr6 52210970 52211001 -97306036 + GC_rich Low_complexity Low_complexity 1 31 0 3 983 396 0 0 0 chr6 52211614 52211658 -97305379 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 983 531 0 0 0 chr6 52211658 52211716 -97305321 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 983 438 20 0 0 chr6 52215013 52215064 -97301973 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 983 387 178 335 204 chr6 52219735 52219926 -97297111 - B3 SINE B2 0 216 1 3 983 363 282 61 35 chr6 52222065 52222179 -97294858 + B4 SINE B4 78 194 -98 3 983 746 214 0 14 chr6 52222082 52222224 -97294813 + B1_Mur2 SINE Alu 9 148 -1 3 983 370 71 60 0 chr6 52222225 52222309 -97294728 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 983 235 292 125 0 chr6 52222319 52222391 -97294646 - ID4_ SINE ID 0 83 3 3 983 424 300 14 14 chr6 52222515 52222657 -97294380 + L1ME3 LINE L1 6021 6162 0 3 983 314 229 10 145 chr6 52222657 52222763 -97294274 - MIRc SINE MIR -75 193 103 3 983 336 77 0 0 chr6 52224613 52224665 -97292372 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 3 983 324 0 0 0 chr6 52225030 52225066 -97291971 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 983 245 258 16 0 chr6 52225191 52225253 -97291784 + CT-rich Low_complexity Low_complexity 1 63 0 3 983 1163 172 14 41 chr6 52225553 52225771 -97291266 + URR1B DNA MER1_type 6 217 -8 3 983 1115 115 15 76 chr6 52227136 52227334 -97289703 - B2_Mm2 SINE B2 -7 188 3 3 983 674 260 119 10 chr6 52227550 52227744 -97289293 - MER20 DNA MER1_type 0 219 5 3 983 21 36 0 0 chr6 52227971 52227999 -97289038 + AT_rich Low_complexity Low_complexity 1 28 0 3 983 687 152 0 0 chr6 52228005 52228110 -97288927 - B2_Mm2 SINE B2 -90 105 1 3 983 1198 82 0 0 chr6 52228364 52228511 -97288526 - B1_Mus1 SINE Alu -1 147 1 3 983 252 77 0 0 chr6 52228560 52228599 -97288438 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 3 983 1143 39 175 0 chr6 52228622 52228776 -97288261 - B2_Mm2 SINE B2 -14 181 1 3 983 894 140 52 0 chr6 52228813 52228949 -97288088 - B1_Mur4 SINE Alu -7 143 1 3 983 764 167 26 65 chr6 52228963 52229117 -97287920 - B1_Mur4 SINE Alu -1 149 2 3 983 713 257 47 6 chr6 52229145 52229317 -97287720 + B3A SINE B2 2 180 -18 3 983 1630 32 0 0 chr6 52229344 52229529 -97287508 - B2_Mm1a SINE B2 -7 186 2 3 983 1024 122 0 20 chr6 52229610 52229760 -97287277 - B1_Mur1 SINE Alu -2 147 1 3 983 321 197 0 0 chr6 52229942 52230008 -97287029 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 983 360 256 16 64 chr6 52230144 52230269 -97286768 - MIRb SINE MIR -63 205 87 3 983 360 265 101 60 chr6 52230417 52230600 -97286437 + B3A SINE B2 3 198 0 3 983 1613 38 0 0 chr6 52230746 52230931 -97286106 - B2_Mm1t SINE B2 -6 187 3 3 983 552 278 51 41 chr6 52231825 52232020 -97285017 - B3A SINE B2 -1 197 1 3 983 248 303 73 9 chr6 52232076 52232186 -97284851 - MIRb SINE MIR -80 188 72 3 983 1218 75 0 0 chr6 52232951 52233098 -97283939 + B1_Mus2 SINE Alu 1 147 0 3 983 230 171 0 35 chr6 52233098 52233183 -97283854 + A-rich Low_complexity Low_complexity 1 82 0 3 983 270 0 0 0 chr6 52233410 52233440 -97283597 + (T)n Simple_repeat Simple_repeat 1 30 0 3 983 223 257 25 75 chr6 52233743 52233823 -97283214 + ID4 SINE ID 5 80 -3 3 983 492 274 8 25 chr6 52233984 52234104 -97282933 + PB1D7 SINE Alu 1 118 -2 3 983 496 276 0 0 chr6 52234108 52234213 -97282824 + RSINE1 SINE B4 1 105 -60 3 983 180 77 0 0 chr6 52234368 52234394 -97282643 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 983 204 40 0 0 chr6 52234472 52234497 -97282540 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 983 909 133 0 23 chr6 52234539 52234670 -97282367 - B1_Mus1 SINE Alu -19 129 2 3 983 210 313 113 62 chr6 52235025 52235202 -97281835 + MIRb SINE MIR 28 217 -51 3 983 1330 113 5 0 chr6 52235202 52235396 -97281641 + B2_Mm2 SINE B2 1 195 0 3 983 529 241 86 14 chr6 52235478 52235617 -97281420 - B1F2 SINE Alu 0 149 1 3 983 592 244 0 16 chr6 52235753 52235878 -97281159 - RSINE1 SINE B4 -40 125 3 3 983 552 191 63 75 chr6 52235878 52236037 -97281000 - ID_B1 SINE B4 -66 158 2 3 983 308 331 22 26 chr6 52236086 52236358 -97280679 + L1ME1 LINE L1 5782 6054 -125 3 983 324 103 0 0 chr6 52236399 52236457 -97280580 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 3 983 1400 87 5 0 chr6 52236511 52236696 -97280341 - B2_Mm1a SINE B2 -7 186 1 3 983 1047 199 44 15 chr6 52236738 52236942 -97280095 + B3 SINE B2 5 214 -2 3 983 555 16 0 0 chr6 52237429 52237493 -97279544 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 4 983 231 98 109 73 chr6 52237573 52237628 -97279409 - B3 SINE B2 -2 214 158 4 983 679 228 152 0 chr6 52237661 52237832 -97279205 - B3A SINE B2 0 198 2 4 983 396 0 0 0 chr6 52237845 52237889 -97279148 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 983 1322 91 11 0 chr6 52237952 52238127 -97278910 + B2_Mm1t SINE B2 3 179 -14 4 983 372 99 31 3 chr6 52238193 52238289 -97278748 + B2_Mm2 SINE B2 47 181 -14 4 983 297 128 0 0 chr6 52238289 52238336 -97278701 + (T)n Simple_repeat Simple_repeat 1 47 0 4 983 1230 54 0 0 chr6 52238336 52238483 -97278554 - B1_Mm SINE Alu 0 147 1 4 983 202 143 0 23 chr6 52238497 52238540 -97278497 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 4 983 720 210 29 14 chr6 52238625 52238765 -97278272 - B1_Mur1 SINE Alu -4 145 4 4 983 621 205 98 0 chr6 52238800 52238922 -97278115 - RSINE1 SINE B4 -30 135 2 4 983 1382 99 16 0 chr6 52239018 52239033 -97278004 - B2_Mm2 SINE B2 0 195 181 4 983 765 188 34 20 chr6 52239033 52239180 -97277857 - B1_Mur2 SINE Alu 0 149 1 4 983 1382 99 16 0 chr6 52239180 52239356 -97277681 - B2_Mm2 SINE B2 -15 180 3 4 983 690 289 42 26 chr6 52239401 52239593 -97277444 + B3A SINE B2 3 197 -1 4 983 441 0 0 0 chr6 52239630 52239679 -97277358 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 983 316 218 269 0 chr6 52239682 52239760 -97277277 - B3A SINE B2 -99 99 1 4 983 603 147 0 0 chr6 52239834 52239936 -97277101 + (GGA)n Simple_repeat Simple_repeat 2 103 0 4 983 709 196 7 27 chr6 52243467 52243614 -97273423 + B1_Mus1 SINE Alu 5 148 0 4 983 305 285 114 179 chr6 52243783 52243835 -97273202 + MTEa LTR MaLR 3 51 -328 4 983 696 286 85 0 chr6 52243835 52244034 -97273003 + B3 SINE B2 1 216 0 4 983 305 285 114 179 chr6 52244034 52244165 -97272872 + MTEa LTR MaLR 52 174 -205 4 983 397 315 31 23 chr6 52244145 52244166 -97272871 + ID_B1 SINE B4 68 198 -26 4 983 547 248 18 0 chr6 52244166 52244275 -97272762 + B1F SINE Alu 10 120 -29 4 983 235 289 0 0 chr6 52244289 52244334 -97272703 - ID4_ SINE ID -14 69 25 4 983 1175 95 6 12 chr6 52244398 52244411 -97272626 - B2_Mm1a SINE B2 -23 170 159 4 983 369 0 0 0 chr6 52244411 52244452 -97272585 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 4 983 1175 95 6 12 chr6 52244452 52244608 -97272429 - B2_Mm1a SINE B2 -35 158 2 4 983 2184 196 40 189 chr6 52244614 52245318 -97271719 - RMER19C LTR ERVK -12 599 1 4 983 967 140 6 17 chr6 52245345 52245526 -97271511 + CT-rich Low_complexity Low_complexity 2 180 0 4 983 707 216 7 33 chr6 52245573 52245726 -97271311 - B1_Mur2 SINE Alu 0 149 1 4 983 736 237 39 28 chr6 52245747 52245925 -97271112 - B3A SINE B2 -16 182 3 4 983 1031 143 0 52 chr6 52245925 52246117 -97270920 - B2_Mm2 SINE B2 -4 191 10 4 983 522 251 104 30 chr6 52246128 52246329 -97270708 - ID_B1 SINE B4 -8 216 1 4 983 1620 212 70 22 chr6 52246605 52246800 -97270237 - ORR1D1 LTR MaLR 0 374 165 4 983 609 52 0 0 chr6 52246800 52246877 -97270160 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 983 1620 212 70 22 chr6 52246877 52247038 -97269999 - ORR1D1 LTR MaLR -210 164 1 4 983 281 331 96 7 chr6 52247246 52247392 -97269645 - MLT1J LTR MaLR -314 198 40 4 983 276 170 0 0 chr6 52247859 52247912 -97269125 + CT-rich Low_complexity Low_complexity 3 55 0 4 983 391 250 12 12 chr6 52247917 52248002 -97269035 - PB1 SINE Alu -30 97 13 4 983 240 35 0 0 chr6 52248021 52248050 -97268987 + (TTCC)n Simple_repeat Simple_repeat 2 30 0 4 983 339 25 0 0 chr6 52248052 52248092 -97268945 + (TCCCC)n Simple_repeat Simple_repeat 1 40 0 4 983 761 40 20 0 chr6 52248140 52248240 -97268797 + (TTTC)n Simple_repeat Simple_repeat 2 103 0 4 983 580 220 110 29 chr6 52248252 52248388 -97268649 - B1_Mur3 SINE Alu -1 148 2 4 983 462 289 155 36 chr6 52249002 52249196 -97267841 - MIR SINE MIR -2 260 44 4 983 306 0 0 0 chr6 52249388 52249422 -97267615 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 983 1228 50 38 0 chr6 52249422 52249582 -97267455 - B2_Mm2 SINE B2 -28 167 2 4 983 665 144 0 8 chr6 52249729 52249848 -97267189 + A-rich Low_complexity Low_complexity 3 120 0 4 983 394 291 30 0 chr6 52249902 52250042 -97266995 + MIR SINE MIR 62 210 -58 4 983 715 261 7 7 chr6 52250045 52250199 -97266838 + B3 SINE B2 34 187 -29 4 983 186 71 0 0 chr6 52250204 52250232 -97266805 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 983 2141 110 68 9 chr6 52250340 52250679 -97266358 - RLTR15 LTR ERVK 0 359 1 4 983 203 348 25 59 chr6 52251246 52251365 -97265672 + MIRc SINE MIR 56 170 -98 4 983 473 192 153 32 chr6 52251447 52251571 -97265466 + B1_Mus2 SINE Alu 5 143 -4 4 983 378 0 0 0 chr6 52251588 52251630 -97265407 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 983 859 89 7 15 chr6 52251717 52251853 -97265184 + (GGGA)n Simple_repeat Simple_repeat 4 138 0 4 983 262 280 8 31 chr6 52251887 52251964 -97265073 + PB1D10 SINE Alu 6 83 -66 4 983 814 250 0 0 chr6 52251970 52252126 -97264911 + RSINE1 SINE B4 1 156 -9 4 983 237 285 68 68 chr6 52252173 52252305 -97264732 + RLTR25B LTR ERVK 367 498 -530 4 983 691 152 36 43 chr6 52252215 52252345 -97264692 + B1_Mur4 SINE Alu 9 139 -11 4 983 285 29 0 0 chr6 52252345 52252379 -97264658 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 983 268 171 41 105 chr6 52252470 52252556 -97264481 + MIRc SINE MIR 81 161 -47 4 983 396 0 0 0 chr6 52252574 52252618 -97264419 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 4 983 560 176 103 37 chr6 52252618 52252749 -97264288 - B1_Mus2 SINE Alu -1 146 7 4 983 1228 155 19 10 chr6 52252868 52253076 -97263961 - B3 SINE B2 -4 212 3 4 983 463 250 143 16 chr6 52253079 52253205 -97263832 - B1_Mur1 SINE Alu 0 149 8 4 983 583 268 80 0 chr6 52253262 52253400 -97263637 - B1_Mur2 SINE Alu 0 149 1 4 983 251 330 49 57 chr6 52253296 52253418 -97263619 - MT2B LTR ERVL -338 263 143 4 983 332 342 113 5 chr6 52253605 52253808 -97263229 + MIRb SINE MIR 20 244 -24 4 983 312 27 0 0 chr6 52254198 52254235 -97262802 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 983 345 47 0 0 chr6 52254236 52254279 -97262758 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 983 1027 198 19 28 chr6 52254312 52254525 -97262512 - B3 SINE B2 -5 211 1 4 983 726 279 6 0 chr6 52254532 52254693 -97262344 - ID_B1 SINE B4 -62 162 1 4 983 287 75 0 48 chr6 52254693 52254731 -97262306 + PB1D9 SINE Alu 24 59 -61 4 983 395 0 0 161 chr6 52254733 52255068 -97261969 + (CAGAG)n Simple_repeat Simple_repeat 1 280 0 4 983 480 131 64 92 chr6 52255071 52255150 -97261887 + B1_Mus2 SINE Alu 42 121 -26 4 983 198 0 0 0 chr6 52255150 52255172 -97261865 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 983 480 131 64 92 chr6 52255172 52255201 -97261836 + B1_Mus2 SINE Alu 122 147 0 4 983 326 247 294 0 chr6 52255358 52255504 -97261533 - MER5A DNA MER1_type 0 189 1 4 983 263 258 65 33 chr6 52257219 52257311 -97259726 + B1F2 SINE Alu 43 137 -12 4 983 253 355 0 0 chr6 52257352 52257428 -97259609 + ID4_ SINE ID 8 83 0 4 983 1117 68 7 0 chr6 52257963 52258110 -97258927 + B1_Mus1 SINE Alu 1 148 0 4 983 273 163 0 0 chr6 52258110 52258159 -97258878 + GA-rich Low_complexity Low_complexity 2 50 0 4 983 246 292 128 23 chr6 52258196 52258329 -97258708 + B1F SINE Alu 2 148 -1 4 983 210 143 0 0 chr6 52261096 52261131 -97255906 + (T)n Simple_repeat Simple_repeat 1 35 0 4 983 190 0 0 62 chr6 52262383 52262415 -97254622 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 4 983 207 0 0 0 chr6 52263115 52263138 -97253899 + (A)n Simple_repeat Simple_repeat 1 23 0 4 983 265 231 18 46 chr6 52266858 52266967 -97250070 + (CCG)n Simple_repeat Simple_repeat 2 107 0 4 983 1043 120 0 6 chr6 52270659 52270827 -97246210 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 4 983 234 0 0 0 chr6 52272543 52272569 -97244468 + (T)n Simple_repeat Simple_repeat 1 26 0 4 983 231 300 14 28 chr6 52275062 52275134 -97241903 - ID4 SINE ID -2 81 11 4 983 31 0 0 0 chr6 52275134 52275165 -97241872 + AT_rich Low_complexity Low_complexity 1 31 0 4 983 1158 55 0 33 chr6 52275216 52275231 -97241806 - B1_Mm SINE Alu 0 147 136 4 983 207 0 0 0 chr6 52275231 52275254 -97241783 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 4 983 1158 55 0 33 chr6 52275254 52275389 -97241648 - B1_Mm SINE Alu -12 135 2 4 983 728 195 0 15 chr6 52275392 52275522 -97241515 - B1_Mur1 SINE Alu -1 148 21 4 983 356 300 78 0 chr6 52276043 52276133 -97240904 - PB1D10 SINE Alu -20 97 1 4 983 233 365 71 30 chr6 52276045 52276144 -97240893 - ID_B1 SINE B4 -48 176 74 4 983 1242 100 0 0 chr6 52277291 52277471 -97239566 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 983 533 15 15 0 chr6 52277480 52277546 -97239491 + (TCCCC)n Simple_repeat Simple_repeat 2 68 0 4 983 288 0 0 0 chr6 52277546 52277578 -97239459 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 4 983 466 291 85 27 chr6 52278057 52278316 -97238721 - L1M3 LINE L1 -552 5781 5504 4 983 316 261 45 21 chr6 52278323 52278426 -97238611 - ID4_ SINE ID -41 111 9 4 983 239 269 73 55 chr6 52278453 52278563 -97238474 - B1F SINE Alu -10 139 28 4 983 329 238 52 65 chr6 52278749 52278902 -97238135 - L1M3 LINE L1 -821 5479 5329 4 983 739 194 0 0 chr6 52278964 52279093 -97237944 - B3 SINE B2 -86 130 2 4 983 384 190 38 0 chr6 52279167 52279246 -97237791 - B3 SINE B2 -108 108 27 4 983 504 264 196 26 chr6 52279246 52279557 -97237480 - L1M3 LINE L1 -850 5290 4927 4 983 508 203 153 23 chr6 52279625 52279756 -97237281 - B1_Mur3 SINE Alu 0 149 2 5 983 4777 74 12 23 chr6 52280129 52280794 -97236243 - L1_Mus3 LINE L1 0 6638 5981 5 983 1570 47 5 0 chr6 52280820 52281011 -97236026 - B2_Mm1a SINE B2 0 193 2 5 983 204 125 0 0 chr6 52281172 52281204 -97235833 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 983 450 0 0 0 chr6 52281982 52282032 -97235005 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 983 309 182 130 0 chr6 52282032 52282109 -97234928 - B1_Mur4 SINE Alu -16 134 48 5 983 277 301 140 9 chr6 52282500 52282614 -97234423 + MIRb SINE MIR 2 130 -138 5 983 834 181 19 13 chr6 52283265 52283422 -97233615 - B3 SINE B2 -13 203 46 5 983 781 84 84 0 chr6 52283430 52283549 -97233488 - B2_Mm2 SINE B2 -64 131 3 5 983 3168 14 0 0 chr6 52283580 52283926 -97233111 + ORR1A0 LTR MaLR 1 346 0 5 983 14404 50 7 1 chr6 52283926 52285707 -97231330 + ORR1A0-int LTR MaLR 1 1792 0 5 983 3180 12 0 0 chr6 52285707 52286053 -97230984 + ORR1A0 LTR MaLR 1 346 0 5 983 760 163 0 0 chr6 52286705 52286828 -97230209 + B1_Mur4 SINE Alu 21 143 -7 5 983 360 0 0 0 chr6 52286847 52286887 -97230150 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 983 275 214 0 0 chr6 52286947 52287003 -97230034 + ID_B1 SINE B4 160 215 -9 5 983 275 304 52 0 chr6 52287028 52287143 -97229894 - L1MB2 LINE L1 -21 6150 6030 5 983 236 281 43 53 chr6 52287169 52287263 -97229774 - B1_Mur3 SINE Alu -51 98 6 5 983 311 232 94 35 chr6 52287187 52287272 -97229765 - B4A SINE B4 -118 174 85 5 983 196 191 48 0 chr6 52287778 52287820 -97229217 - L2c LINE L2 -216 3171 3128 5 983 664 234 68 11 chr6 52287820 52287997 -97229040 + L1MA4 LINE L1 5757 5943 -357 5 983 524 122 33 0 chr6 52288260 52288350 -97228687 - B1_Mur3 SINE Alu 0 149 57 5 983 842 168 28 0 chr6 52288867 52289010 -97228027 + B1_Mur1 SINE Alu 1 147 -2 5 983 514 196 74 9 chr6 52289756 52289864 -97227173 + PB1D10 SINE Alu 1 115 -2 5 983 270 0 0 0 chr6 52290195 52290225 -97226812 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 983 333 0 0 0 chr6 52290225 52290262 -97226775 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 983 1135 217 4 8 chr6 52290619 52290861 -97226176 + MTD LTR MaLR 1 241 -178 5 983 1165 208 119 49 chr6 52290877 52291246 -97225791 + ORR1D1-int LTR MaLR 948 1342 -28 5 983 748 218 60 15 chr6 52291257 52291426 -97225611 + ORR1D1 LTR MaLR 1 167 -207 5 983 270 0 0 0 chr6 52291426 52291456 -97225581 + (TCTCTG)n Simple_repeat Simple_repeat 1 30 0 5 983 748 265 58 28 chr6 52291456 52291520 -97225517 + ORR1D1 LTR MaLR 168 237 -133 5 983 202 250 0 0 chr6 52291552 52291596 -97225441 + T-rich Low_complexity Low_complexity 1 44 0 5 983 719 160 0 22 chr6 52291597 52291749 -97225288 - B1_Mur2 SINE Alu 0 149 1 5 983 352 235 12 0 chr6 52291749 52291819 -97225218 + ORR1D1 LTR MaLR 304 374 0 5 983 976 204 0 29 chr6 52291819 52292007 -97225030 + MTD LTR MaLR 238 419 0 5 983 306 73 0 0 chr6 52292143 52292184 -97224853 + (TCTA)n Simple_repeat Simple_repeat 3 43 0 5 983 207 204 0 18 chr6 52292185 52292240 -97224797 + T-rich Low_complexity Low_complexity 6 59 0 5 983 1221 41 7 0 chr6 52292240 52292385 -97224652 - B1_Mus1 SINE Alu 0 148 3 5 983 860 175 216 0 chr6 52292386 52292557 -97224480 - B3 SINE B2 -8 208 1 5 983 238 271 28 14 chr6 52292592 52292663 -97224374 - ID4 SINE ID -1 82 11 5 983 261 83 0 0 chr6 52292677 52292713 -97224324 + (TTTCC)n Simple_repeat Simple_repeat 4 39 0 5 983 545 233 37 15 chr6 52292714 52292849 -97224188 - ID_B1 SINE B4 0 224 87 5 983 249 238 36 98 chr6 52292751 52292863 -97224174 - MT2B LTR ERVL -344 257 153 5 983 213 171 0 24 chr6 52293072 52293114 -97223923 + PB1D10 SINE Alu 36 76 -41 5 983 180 0 0 0 chr6 52293184 52293204 -97223833 + (CAT)n Simple_repeat Simple_repeat 2 21 0 5 983 789 175 21 21 chr6 52293204 52293344 -97223693 - B1_Mur3 SINE Alu -9 140 1 5 983 628 244 62 53 chr6 52293367 52293575 -97223462 - B3A SINE B2 -5 211 2 5 983 1309 93 5 16 chr6 52293903 52294089 -97222948 - B2_Mm1a SINE B2 -8 185 2 5 983 216 0 0 0 chr6 52294479 52294503 -97222534 + (T)n Simple_repeat Simple_repeat 1 24 0 5 983 204 67 0 0 chr6 52295666 52295696 -97221341 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 5 983 180 176 0 0 chr6 52295879 52295913 -97221124 + CT-rich Low_complexity Low_complexity 3 36 0 5 983 369 109 0 0 chr6 52295915 52295970 -97221067 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 983 1143 79 11 22 chr6 52296190 52296372 -97220665 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 5 983 503 31 15 0 chr6 52296379 52296444 -97220593 + (TC)n Simple_repeat Simple_repeat 2 67 0 5 983 771 181 7 26 chr6 52296480 52296633 -97220404 - B1_Mur4 SINE Alu 0 150 1 5 983 342 0 0 0 chr6 52296644 52296682 -97220355 + (T)n Simple_repeat Simple_repeat 1 38 0 5 983 1336 106 0 16 chr6 52297037 52297229 -97219808 + B2_Mm2 SINE B2 2 190 -5 5 984 905 62 40 14 chr6 52298239 52298387 -97218650 + (TTCC)n Simple_repeat Simple_repeat 2 153 0 5 984 3003 81 100 0 chr6 52298387 52298817 -97218220 - IAPLTR2_Mm LTR ERVK -2 473 1 5 984 6274 39 4 12 chr6 52298819 52299569 -97217468 - IAPEz-int LTR ERVK -2 6479 5736 5 984 2256 65 0 0 chr6 52299568 52299846 -97217191 - IAPEz-int LTR ERVK -4845 1636 1359 5 984 4222 89 34 58 chr6 52299846 52300604 -97216433 - IAPEz-int LTR ERVK -5819 662 9 5 984 3129 80 80 0 chr6 52300605 52301045 -97215992 - IAPLTR2_Mm LTR ERVK 0 475 1 5 984 387 0 0 0 chr6 52301045 52301088 -97215949 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 5 984 330 137 0 0 chr6 52301088 52301139 -97215898 - B1_Mur2 SINE Alu -11 138 88 5 984 386 250 9 19 chr6 52301135 52301241 -97215796 + MTD LTR MaLR 105 209 -210 5 984 433 194 16 26 chr6 52301189 52301315 -97215722 - B1_Mur3 SINE Alu -26 121 3 5 984 255 282 11 45 chr6 52301235 52301324 -97215713 - ID_B1 SINE B4 -63 161 76 5 984 709 248 0 0 chr6 52301382 52301523 -97215514 + B1_Mur1 SINE Alu 2 142 -7 5 984 528 279 30 0 chr6 52301614 52301815 -97215222 + MTD LTR MaLR 173 407 -12 5 984 1995 121 20 64 chr6 52301859 52302203 -97214834 + ORR1A4 LTR MaLR 1 329 0 5 984 584 138 72 18 chr6 52303685 52303796 -97213241 - B1_Mur1 SINE Alu 0 149 33 5 984 422 250 64 57 chr6 52304090 52304230 -97212807 - RSINE1 SINE B4 -22 143 3 5 984 565 235 0 0 chr6 52304284 52304399 -97212638 - B3 SINE B2 -52 164 50 5 984 468 100 22 0 chr6 52304399 52304488 -97212549 + ORR1A4 LTR MaLR 1 122 -272 5 984 2696 127 26 181 chr6 52304489 52305154 -97211883 + ORR1A4-int LTR MaLR 1402 1963 0 5 984 2069 135 9 6 chr6 52305154 52305482 -97211555 + ORR1A4 LTR MaLR 1 329 0 5 984 287 278 14 14 chr6 52305564 52305637 -97211400 + ID4 SINE ID 5 77 -6 5 984 414 39 0 0 chr6 52305645 52305697 -97211340 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 984 947 286 14 20 chr6 52305756 52306049 -97210988 + B4A SINE B4 2 292 0 5 984 232 250 154 40 chr6 52306279 52306454 -97210583 + L1MC5 LINE L1 7246 7440 -521 5 984 454 70 28 0 chr6 52306752 52306823 -97210214 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 984 835 150 36 0 chr6 52306856 52306996 -97210041 - B1_Mur4 SINE Alu -5 145 1 5 984 228 227 105 13 chr6 52307280 52307356 -97209681 - L1MC5 LINE L1 -632 7329 7247 5 984 21 0 0 0 chr6 52307404 52307425 -97209612 + AT_rich Low_complexity Low_complexity 1 21 0 5 984 29072 137 33 8 chr6 52308427 52311018 -97206019 + L1_Mus4 LINE L1 549 3182 -2701 5 984 314 0 49 0 chr6 52311018 52311059 -97205978 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 5 984 29072 106 20 7 chr6 52311059 52314426 -97202611 + L1_Mus4 LINE L1 3183 6630 -6 5 984 788 135 128 0 chr6 52314470 52314603 -97202434 - B1_Mur4 SINE Alu 0 150 1 5 984 516 229 97 16 chr6 52315276 52315400 -97201637 - B1_Mur1 SINE Alu -1 148 15 5 984 315 329 75 50 chr6 52315400 52315436 -97201601 - ID_B1 SINE B4 -1 223 60 5 984 189 0 0 0 chr6 52315885 52315906 -97201131 + (TC)n Simple_repeat Simple_repeat 2 22 0 5 984 333 244 81 0 chr6 52317906 52317992 -97199045 + B1F1 SINE Alu 1 93 -56 5 984 601 230 183 6 chr6 52318062 52318237 -97198800 + ID_B1 SINE B4 2 207 -17 5 984 315 319 29 14 chr6 52318472 52318612 -97198425 + MLT1A0 LTR MaLR 162 303 -62 5 984 197 246 53 0 chr6 52318902 52318959 -97198078 - MIRc SINE MIR -134 134 75 5 984 347 390 27 32 chr6 52319079 52319299 -97197738 - MER58A DNA MER1_type 0 224 6 5 984 850 221 84 0 chr6 52319919 52320109 -97196928 - B3 SINE B2 -6 210 5 5 984 1675 26 0 20 chr6 52321651 52321848 -97195189 + B2_Mm1a SINE B2 1 193 0 5 984 922 183 67 49 chr6 52321853 52322077 -97194960 - Lx7 LINE L1 -7 7689 7462 5 984 301 281 91 28 chr6 52322398 52322541 -97194496 - MIRb SINE MIR -27 241 90 5 984 3250 125 240 2 chr6 52322824 52323419 -97193618 - RMER19A LTR ERVK 0 737 1 5 984 271 337 106 0 chr6 52323592 52323791 -97193246 - L1M5 LINE L1 -460 5713 5494 5 984 294 311 67 0 chr6 52324202 52324321 -97192716 - PB1 SINE Alu 0 127 1 5 984 562 268 6 78 chr6 52324346 52324512 -97192525 - RSINE1 SINE B4 0 165 12 5 984 23 78 0 0 chr6 52324519 52324570 -97192467 + AT_rich Low_complexity Low_complexity 1 51 0 5 984 355 298 115 8 chr6 52324570 52324692 -97192345 - B3A SINE B2 -35 163 29 5 984 250 232 0 0 chr6 52324713 52324769 -97192268 - B3A SINE B2 -139 59 4 5 984 734 146 15 30 chr6 52324798 52324932 -97192105 + B1_Mur2 SINE Alu 15 146 -3 5 984 213 169 40 40 chr6 52324934 52325008 -97192029 + A-rich Low_complexity Low_complexity 3 76 0 5 984 441 54 0 0 chr6 52325741 52325797 -97191240 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 984 231 132 0 0 chr6 52325855 52325893 -97191144 - L2b LINE L2 -5 3370 3333 5 984 1237 41 0 0 chr6 52326200 52326346 -97190691 - B1_Mus2 SINE Alu 0 147 2 5 984 2598 112 5 62 chr6 52326360 52326808 -97190229 - Lx LINE L1 -4 6650 6229 5 984 396 0 0 0 chr6 52327031 52327075 -97189962 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 984 465 314 36 0 chr6 52327215 52327355 -97189682 - MER20 DNA MER1_type -47 172 28 6 984 513 25 12 12 chr6 52327432 52327512 -97189525 - Lx2A LINE L1 -6 7002 6923 6 984 246 208 0 0 chr6 52327650 52327703 -97189334 + CT-rich Low_complexity Low_complexity 2 54 0 6 984 489 205 61 26 chr6 52327704 52327819 -97189218 - B1_Mur3 SINE Alu -5 144 26 6 984 5643 43 1 4 chr6 52327825 52328507 -97188530 - L1Md_F2 LINE L1 0 6582 5903 6 984 324 0 0 0 chr6 52328758 52328794 -97188243 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 6 984 369 0 0 0 chr6 52328796 52328837 -97188200 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 6 984 557 233 0 0 chr6 52328872 52328988 -97188049 - B1_Mur1 SINE Alu -16 133 18 6 984 22 0 0 0 chr6 52330096 52330118 -97186919 + AT_rich Low_complexity Low_complexity 1 22 0 6 984 660 115 0 0 chr6 52330162 52330275 -97186762 + (TG)n Simple_repeat Simple_repeat 1 113 0 6 984 513 270 52 0 chr6 52330277 52330392 -97186645 - RSINE1 SINE B4 -43 122 2 6 984 745 290 124 8 chr6 52330528 52330924 -97186113 - L1MB7 LINE L1 -163 6021 5571 6 984 1815 144 85 6 chr6 52330952 52331281 -97185756 - ORR1B2 LTR MaLR -2 365 11 6 984 1788 5 0 0 chr6 52331464 52331665 -97185372 - L1Md_A LINE L1 0 6582 6382 6 984 887 174 0 34 chr6 52331889 52331900 -97185137 - B1_Mur4 SINE Alu -6 144 138 6 984 306 0 0 0 chr6 52331900 52331934 -97185103 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 6 984 887 174 0 34 chr6 52331934 52332071 -97184966 - B1_Mur4 SINE Alu -13 137 1 6 984 22 35 0 0 chr6 52332174 52332203 -97184834 + AT_rich Low_complexity Low_complexity 1 29 0 6 984 2407 88 25 0 chr6 52332505 52332824 -97184213 + ORR1A2 LTR MaLR 1 327 0 6 984 202 211 0 0 chr6 52332910 52332948 -97184089 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 984 510 318 45 0 chr6 52333205 52333381 -97183656 - L1MB7 LINE L1 -169 6015 5832 6 984 333 0 0 0 chr6 52333495 52333532 -97183505 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 984 303 295 81 25 chr6 52333657 52333817 -97183220 - L1MEg LINE L1 -5095 989 821 6 984 633 220 60 8 chr6 52333826 52333959 -97183078 + B1_Mur2 SINE Alu 3 142 -7 6 984 2300 192 65 6 chr6 52334066 52334543 -97182494 + RLTR16 LTR ERVK 1 505 0 6 984 23 0 0 0 chr6 52334720 52334743 -97182294 + AT_rich Low_complexity Low_complexity 1 23 0 6 984 390 91 0 0 chr6 52334769 52334824 -97182213 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 984 888 277 80 4 chr6 52334824 52335074 -97181963 - B4A SINE B4 -23 269 1 6 984 978 249 39 88 chr6 52335200 52335552 -97181485 + ORR1E LTR MaLR 4 329 -41 6 984 732 61 0 0 chr6 52335552 52335650 -97181387 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 6 984 853 276 29 96 chr6 52335650 52335683 -97181354 + ORR1E LTR MaLR 330 363 -7 6 984 201 83 56 0 chr6 52336259 52336295 -97180742 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 984 1116 153 0 0 chr6 52336386 52336652 -97180385 + (CTG)n Simple_repeat Simple_repeat 1 266 0 6 984 513 259 9 0 chr6 52336688 52336800 -97180237 - B1_Mur1 SINE Alu 0 149 37 6 984 624 232 109 0 chr6 52336840 52336978 -97180059 - RSINE1 SINE B4 -8 157 5 6 984 204 182 0 0 chr6 52337068 52337112 -97179925 + GA-rich Low_complexity Low_complexity 3 46 0 6 984 8310 66 2 2 chr6 52337493 52337505 -97179532 - L1Md_F LINE L1 -3561 2322 2312 6 984 3371 63 0 16 chr6 52337505 52337940 -97179097 - L1Md_F2 LINE L1 -10 6572 6145 6 984 8310 84 30 11 chr6 52337940 52339804 -97177233 - L1Md_F LINE L1 -3572 2311 409 6 984 506 262 56 7 chr6 52340504 52340646 -97176391 - RSINE1 SINE B4 0 165 17 6 984 518 256 98 7 chr6 52340838 52340987 -97176050 + B3A SINE B2 34 180 -36 6 984 438 69 0 0 chr6 52341006 52341064 -97175973 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 984 181 352 57 0 chr6 52341194 52341282 -97175755 + MIRb SINE MIR 120 212 -56 6 984 370 220 12 35 chr6 52341327 52341412 -97175625 + B1_Mur4 SINE Alu 63 145 -5 6 984 1068 31 0 0 chr6 52341412 52341540 -97175497 + (TC)n Simple_repeat Simple_repeat 2 129 0 6 984 195 69 0 0 chr6 52341540 52341568 -97175469 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 984 885 77 13 0 chr6 52342191 52342334 -97174703 - ORR1B1 LTR MaLR -8 386 230 6 984 239 79 0 26 chr6 52342426 52342465 -97174572 + (CTA)n Simple_repeat Simple_repeat 1 38 0 6 984 349 345 12 6 chr6 52343306 52343472 -97173565 - L1MC LINE L1 -3605 2541 2375 6 984 240 111 0 0 chr6 52343475 52343520 -97173517 + B3 SINE B2 172 216 0 6 984 285 224 14 29 chr6 52343544 52343613 -97173424 + ID4_ SINE ID 2 69 -14 6 984 709 102 7 42 chr6 52343737 52343880 -97173157 + CT-rich Low_complexity Low_complexity 6 143 0 6 984 305 289 58 0 chr6 52343912 52343933 -97173104 - PB1D10 SINE Alu -1 116 7 6 984 317 301 0 0 chr6 52343933 52344016 -97173021 - ID_B1 SINE B4 -54 170 88 6 984 225 0 0 0 chr6 52344088 52344113 -97172924 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 6 984 261 279 0 29 chr6 52345680 52345750 -97171287 - tRNA-Ala-GCA tRNA tRNA -6 69 2 6 984 1003 238 87 28 chr6 52345832 52346121 -97170916 + Lx8 LINE L1 6328 6633 -840 6 984 698 318 5 5 chr6 52346144 52346337 -97170700 - B3 SINE B2 -23 193 1 6 984 998 301 114 5 chr6 52346337 52346738 -97170299 + Lx8 LINE L1 6631 7069 -627 6 984 855 244 15 20 chr6 52346852 52347049 -97169988 + Lx8 LINE L1 7055 7250 -223 6 984 230 214 11 87 chr6 52347066 52347158 -97169879 + Lx8 LINE L1 7359 7443 -30 6 984 294 275 25 0 chr6 52347540 52347620 -97169417 - ORR1E LTR MaLR -211 148 67 6 984 418 282 26 26 chr6 52347677 52347830 -97169207 - MLT1B LTR MaLR -232 158 6 6 984 354 322 78 0 chr6 52348332 52348447 -97168590 + B4A SINE B4 169 292 0 6 984 216 254 0 16 chr6 52348480 52348544 -97168493 + (CATG)n Simple_repeat Simple_repeat 2 64 0 6 984 220 200 0 0 chr6 52348592 52348632 -97168405 + CT-rich Low_complexity Low_complexity 1 40 0 6 984 22 0 0 0 chr6 52348670 52348692 -97168345 + AT_rich Low_complexity Low_complexity 1 22 0 6 984 25 0 0 0 chr6 52348749 52348774 -97168263 + AT_rich Low_complexity Low_complexity 1 25 0 6 984 306 359 31 15 chr6 52349340 52349470 -97167567 + MLT1A1 LTR MaLR 5 136 -229 6 984 380 97 16 0 chr6 52349696 52349758 -97167279 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 984 581 164 29 0 chr6 52349765 52349869 -97167168 - B1F2 SINE Alu -7 142 36 6 984 580 304 14 0 chr6 52349912 52350060 -97166977 - RSINE1 SINE B4 -2 163 14 6 984 2026 241 73 25 chr6 52350071 52350602 -97166435 - Lx8 LINE L1 -130 7343 6787 6 984 299 254 0 0 chr6 52350603 52350666 -97166371 - Lx8 LINE L1 -641 6832 6770 6 984 1022 264 19 8 chr6 52350994 52351257 -97165780 - Lx8 LINE L1 -733 6740 6475 6 984 785 266 40 4 chr6 52351259 52351486 -97165551 + MLT1A1 LTR MaLR 174 408 0 6 984 825 239 23 6 chr6 52351933 52352110 -97164927 + B3A SINE B2 1 180 -18 6 984 486 291 0 8 chr6 52352161 52352279 -97164758 + RSINE1 SINE B4 28 144 -21 6 984 387 0 0 0 chr6 52352288 52352331 -97164706 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 984 1106 147 54 5 chr6 52353021 52353226 -97163811 - RLTR15 LTR ERVK -2 357 143 6 984 783 262 20 92 chr6 52353226 52353520 -97163517 - Lx8 LINE L1 -459 7014 6742 6 984 302 319 0 0 chr6 52353577 52353671 -97163366 + (CA)n Simple_repeat Simple_repeat 1 94 0 6 984 271 312 28 0 chr6 52353700 52353841 -97163196 - L1MEc LINE L1 -5497 903 759 6 984 516 297 91 59 chr6 52353931 52354271 -97162766 - L1MEc LINE L1 -5638 762 412 6 984 282 295 39 0 chr6 52354272 52354350 -97162687 + B1F1 SINE Alu 2 82 -67 6 984 5000 116 25 3 chr6 52354379 52355098 -97161939 - RMER19A LTR ERVK 0 737 3 6 984 180 0 0 0 chr6 52355099 52355119 -97161918 + (CCCA)n Simple_repeat Simple_repeat 4 23 0 6 984 312 311 60 36 chr6 52355243 52355410 -97161627 - L1MEc LINE L1 -6168 232 62 6 984 285 29 0 0 chr6 52355443 52355477 -97161560 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 984 22 26 0 25 chr6 52355494 52355512 -97161525 + AT_rich Low_complexity Low_complexity 1 18 0 6 984 1146 81 0 7 chr6 52355512 52355661 -97161376 - B1_Mus1 SINE Alu 0 148 1 6 984 22 26 0 25 chr6 52355661 52355682 -97161355 + AT_rich Low_complexity Low_complexity 1 21 0 6 984 698 250 52 37 chr6 52355683 52355874 -97161163 - B3A SINE B2 -2 196 3 6 984 186 43 0 0 chr6 52356703 52356726 -97160311 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 984 2945 29 43 3 chr6 52356836 52357187 -97159850 - RLTR10B2 LTR ERVK 0 365 1 6 984 342 295 112 11 chr6 52358340 52358518 -97158519 - B3A SINE B2 -1 197 2 6 984 199 388 23 8 chr6 52360432 52360564 -97156473 + MIR SINE MIR 18 149 -119 6 984 206 267 133 0 chr6 52360773 52360833 -97156204 - MIRb SINE MIR -83 185 118 6 984 290 246 80 0 chr6 52361620 52361721 -97155316 - PB1D7 SINE Alu -23 126 16 6 984 228 204 0 0 chr6 52362444 52362493 -97154544 + LTR16C LTR ERVL 327 375 -114 6 984 365 240 176 46 chr6 52363176 52363307 -97153730 - B1F1 SINE Alu -1 148 1 6 984 254 293 103 8 chr6 52363703 52363820 -97153217 - MLT1L LTR MaLR -291 319 192 6 984 555 233 75 64 chr6 52364276 52364300 -97152737 - B4 SINE B4 -100 192 169 6 984 456 19 0 0 chr6 52364300 52364353 -97152684 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 984 555 233 75 64 chr6 52364353 52364516 -97152521 - B4 SINE B4 -124 168 3 6 984 1004 205 34 20 chr6 52364626 52364830 -97152207 - B3 SINE B2 -8 208 2 6 984 356 275 25 84 chr6 52365169 52365288 -97151749 - PB1D10 SINE Alu -5 112 1 6 984 189 0 0 0 chr6 52366172 52366193 -97150844 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 984 351 0 0 0 chr6 52366193 52366231 -97150806 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 984 299 228 117 21 chr6 52369241 52369335 -97147702 - PB1D10 SINE Alu -1 116 14 6 984 356 361 114 39 chr6 52369372 52369626 -97147411 + B4 SINE B4 2 274 -18 6 984 322 274 0 0 chr6 52369691 52369764 -97147273 + ID4 SINE ID 8 80 -3 7 984 473 279 95 0 chr6 52369929 52370076 -97146961 - RSINE1 SINE B4 -2 163 3 7 984 695 194 0 7 chr6 52370323 52370458 -97146579 - B1_Mur1 SINE Alu -7 142 9 7 984 1330 203 89 86 chr6 52370831 52371214 -97145823 - ORR1C2 LTR MaLR 0 384 1 7 984 294 336 194 4 chr6 52373783 52374061 -97142976 + Arthur1 DNA Tip100 327 657 -3290 7 984 311 152 0 0 chr6 52374073 52374119 -97142918 + RSINE1 SINE B4 20 65 -100 7 984 555 107 0 0 chr6 52374119 52374203 -97142834 + (CA)n Simple_repeat Simple_repeat 2 85 0 7 984 295 198 178 9 chr6 52374263 52374370 -97142667 + Arthur1 DNA Tip100 3564 3688 -259 7 984 608 309 99 30 chr6 52374496 52374830 -97142207 + ORR1E LTR MaLR 1 357 -2 7 984 2339 179 7 7 chr6 52374904 52375325 -97141712 - MTC LTR MaLR 0 421 1 7 984 304 333 49 0 chr6 52375544 52375667 -97141370 - MIR SINE MIR -74 188 60 7 984 707 0 12 0 chr6 52375705 52375788 -97141249 + (TC)n Simple_repeat Simple_repeat 1 84 0 7 984 921 252 63 112 chr6 52376306 52376672 -97140365 - ORR1E LTR MaLR -11 348 1 7 984 261 0 0 0 chr6 52378468 52378497 -97138540 + (T)n Simple_repeat Simple_repeat 1 29 0 7 984 807 144 53 0 chr6 52379709 52379841 -97137196 + B1_Mur3 SINE Alu 1 139 -10 7 984 186 43 0 0 chr6 52379841 52379864 -97137173 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 984 447 19 0 0 chr6 52380486 52380538 -97136499 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 984 205 255 0 19 chr6 52380587 52380639 -97136398 + CT-rich Low_complexity Low_complexity 4 54 0 7 984 251 348 44 15 chr6 52380649 52380786 -97136251 - L1MB5 LINE L1 -101 6073 5933 7 984 1367 110 0 5 chr6 52381381 52381573 -97135464 - B2_Mm2 SINE B2 -4 191 1 7 984 233 109 0 21 chr6 52381584 52381631 -97135406 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 7 984 1179 48 14 0 chr6 52381634 52381779 -97135258 - B1_Mm SINE Alu 0 147 1 7 984 398 232 32 0 chr6 52382436 52382531 -97134506 + ID_B1 SINE B4 114 211 -13 7 984 254 296 83 0 chr6 52382531 52382544 -97134493 + B1F SINE Alu 33 149 0 7 984 527 288 52 0 chr6 52382593 52382746 -97134291 + RSINE1 SINE B4 4 164 -1 7 984 253 136 23 0 chr6 52383002 52383046 -97133991 - B3 SINE B2 -109 107 63 7 984 937 243 9 9 chr6 52383649 52383865 -97133172 - B3 SINE B2 0 216 1 7 984 205 282 55 103 chr6 52385207 52385353 -97131684 - MIRc SINE MIR -96 172 34 7 984 368 281 99 0 chr6 52385586 52385707 -97131330 + ID_B1 SINE B4 89 221 -3 7 984 189 0 0 0 chr6 52386759 52386780 -97130257 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 7 984 560 213 12 104 chr6 52386812 52386985 -97130052 - RSINE1 SINE B4 -7 158 2 7 984 22 0 0 0 chr6 52387215 52387237 -97129800 + AT_rich Low_complexity Low_complexity 1 22 0 7 984 700 204 15 0 chr6 52387342 52387479 -97129558 - B1_Mus1 SINE Alu 0 148 10 7 984 388 279 41 75 chr6 52387347 52387494 -97129543 - B4 SINE B4 -71 221 80 7 984 664 232 43 0 chr6 52387836 52387974 -97129063 + B1_Mur1 SINE Alu 1 144 -5 7 984 738 313 130 51 chr6 52388200 52388570 -97128467 - MLT1L LTR MaLR -62 548 150 7 984 489 122 150 20 chr6 52388831 52388931 -97128106 - PB1D9 SINE Alu -7 113 1 7 984 692 232 0 7 chr6 52389005 52389144 -97127893 + ID_B1 SINE B4 81 218 -6 7 984 248 262 0 130 chr6 52389554 52389646 -97127391 + MT2B LTR ERVL 160 239 -362 7 984 535 226 19 0 chr6 52389573 52389679 -97127358 + PB1D9 SINE Alu 12 119 -1 7 984 245 70 0 44 chr6 52389686 52389731 -97127306 + (CAAAAA)n Simple_repeat Simple_repeat 1 43 0 7 984 684 189 40 47 chr6 52389897 52390047 -97126990 + B1_Mur4 SINE Alu 1 149 -1 7 984 2369 182 39 41 chr6 52390237 52390333 -97126704 + RLTR11A LTR ERVK 4 102 -426 7 984 2766 82 79 5 chr6 52390333 52390724 -97126313 + BGLII LTR ERVK 2 421 0 7 984 2369 182 39 41 chr6 52390724 52391142 -97125895 + RLTR11A LTR ERVK 103 517 -11 7 984 312 280 103 14 chr6 52391359 52391504 -97125533 - MIR SINE MIR -13 249 92 7 984 312 289 41 0 chr6 52391506 52391603 -97125434 - MIR SINE MIR -130 132 32 7 984 351 290 98 64 chr6 52392347 52392612 -97124425 - ORR1E LTR MaLR -9 350 77 7 984 238 370 106 28 chr6 52392760 52392977 -97124060 + L2b LINE L2 3142 3375 0 7 984 808 156 43 0 chr6 52394176 52394317 -97122720 + B1_Mur3 SINE Alu 1 147 -2 7 984 387 141 0 0 chr6 52394320 52394384 -97122653 + (GGA)n Simple_repeat Simple_repeat 3 66 0 7 984 824 250 20 69 chr6 52394875 52395077 -97121960 - B3A SINE B2 -5 193 2 7 984 561 72 0 0 chr6 52395263 52395346 -97121691 + (TC)n Simple_repeat Simple_repeat 1 83 0 7 984 1703 16 5 0 chr6 52395579 52395770 -97121267 - B2_Mm1a SINE B2 0 193 2 7 984 26 50 0 0 chr6 52396267 52396307 -97120730 + AT_rich Low_complexity Low_complexity 1 40 0 7 984 845 211 157 0 chr6 52397294 52397479 -97119558 - B3 SINE B2 -2 214 1 7 984 376 203 14 0 chr6 52397499 52397568 -97119469 - MER5A DNA MER1_type -119 70 1 7 984 599 244 0 62 chr6 52397834 52397978 -97119059 - ID_B1 SINE B4 -4 220 86 7 984 677 137 8 0 chr6 52398330 52398447 -97118590 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 7 984 233 232 203 0 chr6 52398454 52398523 -97118514 + ID2 SINE ID 1 83 0 7 984 396 0 0 0 chr6 52398586 52398630 -97118407 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 984 243 0 0 0 chr6 52399394 52399421 -97117616 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 984 249 33 0 0 chr6 52399421 52399450 -97117587 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 984 218 171 0 0 chr6 52399451 52399486 -97117551 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 7 984 737 169 8 8 chr6 52399596 52399727 -97117310 - RMER19C LTR ERVK 0 611 481 7 984 313 355 45 37 chr6 52399735 52399999 -97117038 - B4 SINE B4 -25 267 2 7 984 409 328 107 47 chr6 52400023 52400276 -97116761 - L1MC LINE L1 -1827 4319 4052 7 984 324 165 158 40 chr6 52400473 52400574 -97116463 + PB1D10 SINE Alu 5 117 0 7 984 365 252 103 7 chr6 52400580 52400716 -97116321 + B1_Mur2 SINE Alu 1 149 0 7 984 912 150 7 0 chr6 52400887 52401027 -97116010 - B1_Mus2 SINE Alu -6 141 1 7 984 1265 68 11 0 chr6 52401365 52401541 -97115496 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 7 984 521 224 15 0 chr6 52401542 52401676 -97115361 + GA-rich Low_complexity Low_complexity 4 139 0 7 984 1180 74 0 0 chr6 52402919 52403067 -97113970 + B1_Mus1 SINE Alu 1 148 0 7 984 216 0 0 0 chr6 52403067 52403091 -97113946 + (A)n Simple_repeat Simple_repeat 1 24 0 7 984 357 24 0 0 chr6 52403183 52403225 -97113812 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 984 297 0 0 0 chr6 52403225 52403257 -97113780 + (GA)n Simple_repeat Simple_repeat 1 33 0 7 984 514 271 0 33 chr6 52403460 52403582 -97113455 + RSINE1 SINE B4 3 120 -45 7 984 1239 41 7 0 chr6 52403582 52403728 -97113309 + B1_Mus1 SINE Alu 2 148 0 7 984 208 139 0 0 chr6 52403730 52403766 -97113271 + (A)n Simple_repeat Simple_repeat 1 36 0 7 984 276 100 0 0 chr6 52403789 52403829 -97113208 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 984 788 165 7 35 chr6 52403931 52404075 -97112962 - B1_Mur4 SINE Alu -10 140 1 7 984 462 293 25 22 chr6 52404177 52404404 -97112633 + CT-rich Low_complexity Low_complexity 1 227 0 7 984 468 109 0 0 chr6 52404659 52404723 -97112314 - URR1B DNA MER1_type 0 225 162 7 984 281 159 23 0 chr6 52404889 52404933 -97112104 + ORR1A3 LTR MaLR 1 45 -284 7 984 607 105 0 0 chr6 52404929 52405015 -97112022 + ORR1A3 LTR MaLR 241 326 0 7 984 249 242 0 46 chr6 52405209 52405252 -97111785 + polypurine Low_complexity Low_complexity 3 43 0 7 984 249 33 0 0 chr6 52405252 52405282 -97111755 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 984 249 242 0 46 chr6 52405282 52405303 -97111734 + polypurine Low_complexity Low_complexity 44 64 0 7 984 719 262 126 0 chr6 52405305 52405488 -97111549 + ID_B1 SINE B4 2 207 -17 7 984 925 79 14 7 chr6 52405492 52405632 -97111405 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 7 984 389 252 105 15 chr6 52405851 52405984 -97111053 + B1F1 SINE Alu 1 145 -4 7 984 302 274 113 38 chr6 52406089 52406222 -97110815 + HAL1 LINE L1 2365 2507 0 7 984 26 74 0 0 chr6 52406236 52406290 -97110747 + AT_rich Low_complexity Low_complexity 1 54 0 7 984 195 129 0 0 chr6 52406386 52406417 -97110620 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 7 984 340 248 42 76 chr6 52408148 52408292 -97108745 - ORR1E LTR MaLR -134 225 87 7 984 318 314 167 0 chr6 52408569 52408671 -97108366 + B3A SINE B2 64 182 -16 7 984 254 95 24 0 chr6 52408712 52408754 -97108283 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 984 720 115 0 0 chr6 52409621 52409734 -97107303 + (TCCC)n Simple_repeat Simple_repeat 2 114 0 7 984 21 57 0 0 chr6 52410151 52410186 -97106851 + AT_rich Low_complexity Low_complexity 1 35 0 7 984 527 301 46 89 chr6 52410203 52410394 -97106643 + B4A SINE B4 1 190 -102 7 984 344 250 192 46 chr6 52410394 52410524 -97106513 + RSINE1 SINE B4 3 151 -14 7 984 527 301 46 89 chr6 52410524 52410584 -97106453 + B4A SINE B4 191 243 -49 7 984 1252 35 7 0 chr6 52410584 52410729 -97106308 + B1_Mm SINE Alu 1 146 -1 7 984 217 236 18 0 chr6 52410808 52410863 -97106174 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 984 228 225 0 4 chr6 52410921 52410976 -97106061 + PB1 SINE Alu 17 70 -225 8 984 313 197 0 76 chr6 52411006 52411072 -97105965 + tRNA-Ala-GCY_ tRNA tRNA 3 63 -12 8 984 303 250 23 91 chr6 52411072 52411089 -97105948 + ID4_ SINE ID 7 83 0 8 984 220 312 35 35 chr6 52411512 52411628 -97105409 + MER5B DNA MER1_type 63 178 0 8 984 313 255 128 0 chr6 52411636 52411730 -97105307 - MER5A1 DNA MER1_type 0 166 61 8 984 344 41 0 39 chr6 52411731 52411782 -97105255 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 8 984 1497 121 69 19 chr6 52411831 52412093 -97104944 - Lx2 LINE L1 0 6997 6723 8 984 574 307 120 52 chr6 52412582 52412908 -97104129 + ORR1E LTR MaLR 1 348 -11 8 984 274 208 95 27 chr6 52414380 52414454 -97102583 - MLT1B LTR MaLR -25 365 287 8 984 242 314 220 0 chr6 52414467 52414585 -97102452 - L4 LINE RTE -280 1749 1606 8 984 22 0 0 0 chr6 52414948 52414970 -97102067 + AT_rich Low_complexity Low_complexity 1 22 0 8 984 333 0 0 0 chr6 52415008 52415045 -97101992 + (TAA)n Simple_repeat Simple_repeat 1 37 0 8 984 692 299 97 46 chr6 52416057 52416407 -97100630 - MLT1A LTR MaLR 0 374 7 8 984 186 43 0 0 chr6 52416846 52416869 -97100168 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 8 984 270 275 0 0 chr6 52417043 52417123 -97099914 - ID4_ SINE ID -1 82 3 8 984 528 84 0 0 chr6 52417543 52417626 -97099411 + (GA)n Simple_repeat Simple_repeat 1 83 0 8 984 336 214 250 20 chr6 52417632 52417732 -97099305 - RSINE1 SINE B4 -39 126 4 8 984 242 290 29 14 chr6 52418582 52418652 -97098385 + ID4 SINE ID 2 72 -11 8 984 747 187 170 0 chr6 52418775 52418946 -97098091 - B3 SINE B2 -15 201 2 8 984 275 83 0 0 chr6 52419096 52419132 -97097905 - B2_Mm1a SINE B2 -36 157 122 8 984 216 36 0 0 chr6 52419133 52419161 -97097876 - B3 SINE B2 -188 28 1 8 984 498 238 20 0 chr6 52419271 52419372 -97097665 - PB1D10 SINE Alu -14 103 1 8 984 725 176 0 139 chr6 52419578 52419743 -97097294 - B1_Mur2 SINE Alu -3 146 5 8 984 186 133 0 0 chr6 52419846 52419876 -97097161 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 8 984 587 237 0 17 chr6 52419921 52420041 -97096996 - B1_Mm SINE Alu -28 119 2 8 984 680 199 271 18 chr6 52420155 52420380 -97096657 + ORR1D1 LTR MaLR 2 283 -91 8 984 180 0 0 0 chr6 52420729 52420749 -97096288 + (T)n Simple_repeat Simple_repeat 1 20 0 8 984 1247 48 0 0 chr6 52420749 52420895 -97096142 - B1_Mus2 SINE Alu 0 147 2 8 984 657 247 51 19 chr6 52420896 52421053 -97095984 - ID_B1 SINE B4 -60 164 3 8 984 538 337 80 15 chr6 52421380 52421579 -97095458 + MLT1J LTR MaLR 116 327 -185 8 984 511 253 115 5 chr6 52421849 52422040 -97094997 + L1MB5 LINE L1 5117 5328 -818 8 984 349 230 136 17 chr6 52422041 52422156 -97094881 + B1F1 SINE Alu 3 125 -24 8 984 1564 292 63 62 chr6 52422188 52423007 -97094030 + L1MB5 LINE L1 5345 6164 -10 8 984 417 123 0 0 chr6 52423023 52423088 -97093949 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 984 507 17 0 0 chr6 52423767 52423827 -97093210 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 984 296 248 74 128 chr6 52424171 52424319 -97092718 + L2a LINE L2 3283 3422 -4 8 984 468 77 0 0 chr6 52424831 52424896 -97092141 + (TG)n Simple_repeat Simple_repeat 1 65 0 8 984 447 245 19 38 chr6 52425992 52426098 -97090939 + ORR1E LTR MaLR 14 117 -242 8 984 225 250 94 0 chr6 52426178 52426242 -97090795 + ORR1E LTR MaLR 255 324 -55 8 984 342 279 51 68 chr6 52426246 52426423 -97090614 + B2_Mm1t SINE B2 10 183 -10 8 984 180 0 0 0 chr6 52426700 52426720 -97090317 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 984 293 347 37 15 chr6 52427382 52427501 -97089536 - L2a LINE L2 -6 3420 3254 8 15 188 309 43 14 chr6 52428799 52428868 -97088169 - L2b LINE L2 -7 3419 3349 8 985 200 379 23 0 chr6 52428941 52429028 -97088009 - L2b LINE L2 -39 3336 3248 8 985 407 323 100 14 chr6 52429506 52429726 -97087311 + MLT1A0 LTR MaLR 10 248 -117 8 985 1104 174 76 42 chr6 52429748 52430036 -97087001 - Lx7 LINE L1 0 7696 7399 8 985 990 167 0 0 chr6 52430037 52430217 -97086820 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 985 387 266 0 0 chr6 52430228 52430341 -97086696 + (CATATA)n Simple_repeat Simple_repeat 2 114 0 8 985 378 283 19 0 chr6 52430392 52430498 -97086539 - Lx7 LINE L1 -339 7357 7250 8 985 348 327 19 0 chr6 52430510 52430617 -97086420 + MLT1A0 LTR MaLR 257 365 0 8 985 459 165 0 0 chr6 52431489 52431574 -97085463 + (CA)n Simple_repeat Simple_repeat 2 86 0 8 985 21 36 0 0 chr6 52431673 52431701 -97085336 + AT_rich Low_complexity Low_complexity 1 28 0 8 985 315 200 125 0 chr6 52431701 52431781 -97085256 + L1ME4a LINE L1 6035 6124 0 8 985 434 217 21 11 chr6 52433100 52433193 -97083844 - B1_Mur1 SINE Alu -15 134 41 8 985 329 333 93 16 chr6 52433330 52433513 -97083524 - MIRb SINE MIR -61 207 11 8 985 312 245 0 140 chr6 52433599 52433713 -97083324 - B3 SINE B2 0 216 119 8 985 1584 36 0 25 chr6 52434014 52434212 -97082825 + B2_Mm2 SINE B2 3 195 0 8 985 768 214 7 21 chr6 52434214 52434357 -97082680 - B3 SINE B2 -75 141 1 8 985 334 309 106 22 chr6 52436822 52437001 -97080036 - LTR16C LTR ERVL 0 489 296 8 985 282 304 13 0 chr6 52437701 52437780 -97079257 - LTR16C LTR ERVL -221 268 189 8 985 207 0 0 0 chr6 52437821 52437844 -97079193 + (A)n Simple_repeat Simple_repeat 1 23 0 8 985 668 256 74 26 chr6 52438570 52438759 -97078278 - B3A SINE B2 0 198 1 8 985 620 282 42 42 chr6 52438958 52439147 -97077890 - MLT1B LTR MaLR -12 378 190 8 985 271 316 34 42 chr6 52439238 52439357 -97077680 + Charlie1a DNA MER1_type 808 925 -530 8 985 1350 227 154 20 chr6 52439375 52439725 -97077312 - MTD LTR MaLR -14 405 9 8 985 502 275 82 135 chr6 52439723 52440295 -97076742 + Charlie1a DNA MER1_type 914 1455 0 8 985 402 242 112 8 chr6 52440664 52440789 -97076248 - MER5A1 DNA MER1_type -2 164 27 8 985 282 266 31 0 chr6 52441651 52441716 -97075321 - ID4 SINE ID -16 67 1 8 985 216 0 0 0 chr6 52441762 52441786 -97075251 + (TC)n Simple_repeat Simple_repeat 2 25 0 8 985 476 329 41 14 chr6 52441922 52442067 -97074970 - B4A SINE B4 -117 175 27 8 985 189 0 0 0 chr6 52442267 52442288 -97074749 + (A)n Simple_repeat Simple_repeat 1 21 0 8 985 461 0 51 0 chr6 52442794 52442853 -97074184 + (ATATG)n Simple_repeat Simple_repeat 1 62 0 8 985 383 343 73 28 chr6 52443577 52443754 -97073283 - MIR SINE MIR -24 238 54 8 985 1461 192 69 31 chr6 52444752 52445112 -97071925 - ORR1C2 LTR MaLR 0 384 11 8 985 581 152 9 35 chr6 52445154 52445270 -97071767 - B1_Mus1 SINE Alu 0 148 36 8 985 195 42 0 0 chr6 52445309 52445333 -97071704 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 8 985 215 291 18 0 chr6 52446310 52446365 -97070672 - MER5A1 DNA MER1_type -76 90 35 8 985 3506 248 79 38 chr6 52447296 52448797 -97068240 - L1M4 LINE L1 -744 5402 3777 8 985 483 194 0 0 chr6 52448797 52448895 -97068142 + (TA)n Simple_repeat Simple_repeat 1 98 0 8 985 289 79 0 0 chr6 52448895 52448933 -97068104 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 985 464 327 69 16 chr6 52449006 52449353 -97067684 + L1ME3A LINE L1 5773 6141 -32 8 985 192 77 0 0 chr6 52449489 52449515 -97067522 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 985 408 274 135 27 chr6 52449521 52449780 -97067257 - B4A SINE B4 -5 287 1 8 985 1944 157 46 94 chr6 52451123 52451333 -97065704 - MTC LTR MaLR -5 416 235 8 985 315 0 0 0 chr6 52451333 52451368 -97065669 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 985 1944 157 46 94 chr6 52451368 52451594 -97065443 - MTC LTR MaLR -187 234 1 8 985 375 155 0 0 chr6 52451813 52451897 -97065140 + CT-rich Low_complexity Low_complexity 1 84 0 8 985 876 225 57 26 chr6 52451917 52452109 -97064928 + B3 SINE B2 5 202 -14 8 985 916 273 126 52 chr6 52452458 52452806 -97064231 - MTEa LTR MaLR -5 374 1 8 985 249 163 0 0 chr6 52453834 52453883 -97063154 + (CACTC)n Simple_repeat Simple_repeat 3 51 0 8 985 438 20 0 0 chr6 52455091 52455142 -97061895 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 985 475 260 16 0 chr6 52456638 52456765 -97060272 + ORR1E LTR MaLR 8 136 -223 8 985 229 325 43 17 chr6 52456806 52456922 -97060115 + ORR1E LTR MaLR 252 370 0 8 985 198 0 0 0 chr6 52457857 52457879 -97059158 + (A)n Simple_repeat Simple_repeat 1 22 0 8 985 183 220 0 0 chr6 52458230 52458280 -97058757 + CT-rich Low_complexity Low_complexity 2 51 0 8 985 467 304 97 19 chr6 52458344 52458602 -97058435 - B4A SINE B4 -13 279 2 8 985 22 0 0 0 chr6 52458863 52458885 -97058152 + AT_rich Low_complexity Low_complexity 1 22 0 8 985 384 214 0 0 chr6 52459237 52459307 -97057730 - B1_Mur4 SINE Alu -79 71 2 8 985 266 316 21 21 chr6 52459307 52459330 -97057707 - B4A SINE B4 -133 155 63 8 985 810 107 30 8 chr6 52459331 52459463 -97057574 + B1_Mur4 SINE Alu 16 150 0 8 985 205 89 44 0 chr6 52459480 52459525 -97057512 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 8 985 244 261 43 0 chr6 52459579 52459648 -97057389 + ID4_ SINE ID 8 79 -4 8 985 198 0 0 0 chr6 52460398 52460420 -97056617 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 8 985 423 0 0 0 chr6 52460468 52460515 -97056522 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 985 247 142 65 9 chr6 52460588 52460695 -97056342 + (TG)n Simple_repeat Simple_repeat 2 114 0 8 985 216 204 0 36 chr6 52460698 52460754 -97056283 + (TGG)n Simple_repeat Simple_repeat 3 56 0 8 985 390 42 0 0 chr6 52460754 52460802 -97056235 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 985 180 0 0 0 chr6 52460804 52460824 -97056213 + (TGG)n Simple_repeat Simple_repeat 1 20 0 8 985 182 65 0 61 chr6 52461696 52461729 -97055308 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 985 486 0 0 0 chr6 52462653 52462707 -97054330 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 985 251 189 43 22 chr6 52463051 52463143 -97053894 + GA-rich Low_complexity Low_complexity 4 97 0 8 985 359 266 45 9 chr6 52463633 52463743 -97053294 + HAL1 LINE L1 2393 2506 -1 9 985 380 284 49 0 chr6 52464632 52464734 -97052303 + B3A SINE B2 1 107 -91 9 985 24 32 0 0 chr6 52464806 52464837 -97052200 + AT_rich Low_complexity Low_complexity 1 31 0 9 985 513 177 112 87 chr6 52464846 52464890 -97052147 + RCHARR1 DNA MER1_type 493 525 -449 9 985 743 194 27 40 chr6 52464890 52465032 -97052005 + B1_Mur3 SINE Alu 2 143 -6 9 985 200 35 35 0 chr6 52465032 52465061 -97051976 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 9 985 513 177 112 87 chr6 52465068 52465184 -97051853 + RCHARR1 DNA MER1_type 526 657 -317 9 985 651 269 7 0 chr6 52465236 52465377 -97051660 + RSINE1 SINE B4 2 143 -22 9 985 255 339 5 51 chr6 52465377 52465432 -97051605 + B2_Mm2 SINE B2 1 187 -8 9 985 462 226 61 0 chr6 52465423 52465538 -97051499 + RCHARR1 DNA MER1_type 676 797 -177 9 985 634 253 7 0 chr6 52465531 52465685 -97051352 - ORR1D2-int LTR MaLR -1215 155 1 9 985 1060 217 174 46 chr6 52465685 52466013 -97051024 - ORR1D2 LTR MaLR 0 370 1 9 985 288 280 0 39 chr6 52466288 52466366 -97050671 + ID4_ SINE ID 3 77 -6 9 985 630 322 71 49 chr6 52466836 52467244 -97049793 + MLT1H2 LTR MaLR 71 487 -2 9 985 377 188 12 48 chr6 52467736 52467820 -97049217 + ID4 SINE ID 3 83 0 9 985 259 325 60 54 chr6 52469841 52470007 -97047030 - MLT1G3 LTR MaLR -100 491 325 9 985 249 33 0 0 chr6 52470008 52470038 -97046999 + (TTA)n Simple_repeat Simple_repeat 1 30 0 9 985 763 291 34 32 chr6 52470040 52470395 -97046642 - ORR1E LTR MaLR -4 375 3 9 985 252 0 0 0 chr6 52470471 52470499 -97046538 + (A)n Simple_repeat Simple_repeat 1 28 0 9 985 269 319 11 11 chr6 52470621 52470716 -97046321 - MLT1G3 LTR MaLR -498 97 3 9 985 309 306 29 22 chr6 52471143 52471280 -97045757 - LTR33 LTR ERVL -373 142 5 9 985 1312 289 37 19 chr6 52471826 52472309 -97044728 - L1MC1 LINE L1 -1 6332 5841 9 985 548 252 0 0 chr6 52472327 52472434 -97044603 + B1_Mur2 SINE Alu 2 108 -41 9 985 437 246 20 101 chr6 52472474 52472623 -97044414 - RSINE1 SINE B4 0 165 29 9 985 1803 262 26 38 chr6 52472633 52473492 -97043545 - L1MC1 LINE L1 -476 5857 5013 9 985 238 217 17 0 chr6 52473545 52473605 -97043432 + L1M5 LINE L1 5715 5775 -349 9 985 389 287 105 26 chr6 52475217 52475409 -97041628 + L1ME4a LINE L1 5678 5887 -237 9 985 2045 141 87 20 chr6 52475575 52475967 -97041070 + MTC LTR MaLR 1 418 -3 9 985 322 263 154 39 chr6 52476014 52476174 -97040863 - MTE2a LTR MaLR -9 370 190 9 985 1487 68 16 0 chr6 52476174 52476364 -97040673 - B2_Mm2 SINE B2 -2 193 1 9 985 322 263 154 39 chr6 52476364 52476385 -97040652 - MTE2a LTR MaLR -190 189 168 9 985 267 172 67 17 chr6 52476573 52476658 -97040379 - MTE2a LTR MaLR -224 155 59 9 985 1149 204 20 78 chr6 52476924 52477281 -97039756 - RLTR31_Mur LTR ERVK -217 336 1 9 985 380 237 90 58 chr6 52477287 52477475 -97039562 - L1MC1 LINE L1 -4526 1716 1523 9 985 2239 128 42 26 chr6 52477487 52477873 -97039164 - ORR1B1 LTR MaLR 0 394 3 9 985 480 334 121 80 chr6 52477873 52478235 -97038802 - L1MC1 LINE L1 -4893 1349 1001 9 985 491 195 159 30 chr6 52478235 52478367 -97038670 - B1_Mur2 SINE Alu 0 149 1 9 985 480 334 121 80 chr6 52478367 52479147 -97037890 - L1MC1 LINE L1 -5242 1000 160 9 985 1955 188 69 3 chr6 52479193 52479556 -97037481 - ORR1B1 LTR MaLR -4 390 4 9 985 1726 174 10 3 chr6 52480504 52480804 -97036233 + Lx7 LINE L1 6807 7108 -588 9 985 258 311 75 0 chr6 52480908 52481014 -97036023 + MER5A DNA MER1_type 15 128 -61 9 985 21 0 0 0 chr6 52481658 52481679 -97035358 + AT_rich Low_complexity Low_complexity 1 21 0 9 985 192 250 16 32 chr6 52482662 52482724 -97034313 - MIR SINE MIR -59 149 89 9 985 291 54 0 0 chr6 52482817 52482854 -97034183 + (TGGA)n Simple_repeat Simple_repeat 3 39 0 9 985 386 108 0 13 chr6 52483021 52483096 -97033941 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 9 985 324 120 0 0 chr6 52483430 52483480 -97033557 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 985 490 252 8 32 chr6 52483491 52483614 -97033423 - RSINE1 SINE B4 -43 122 3 9 985 383 206 0 69 chr6 52483764 52483872 -97033165 + PB1D10 SINE Alu 15 114 -3 9 985 1171 205 162 8 chr6 52484067 52484369 -97032668 + MTD LTR MaLR 82 405 -14 9 985 192 200 0 0 chr6 52484958 52485003 -97032034 + C-rich Low_complexity Low_complexity 4 48 0 9 985 180 0 0 0 chr6 52485285 52485305 -97031732 + (C)n Simple_repeat Simple_repeat 1 20 0 9 985 497 298 18 24 chr6 52486022 52486187 -97030850 - L1_Rod LINE L1 -1827 4020 3857 9 985 1560 125 4 4 chr6 52486382 52486607 -97030430 - URR1B DNA MER1_type 0 225 1 9 985 315 49 0 0 chr6 52487087 52487128 -97029909 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 9 985 289 218 0 0 chr6 52488173 52488228 -97028809 - L1_Mur1 LINE L1 -3305 2581 2527 9 985 447 228 25 0 chr6 52488336 52488415 -97028622 + B1F2 SINE Alu 4 84 -65 9 985 2407 141 26 106 chr6 52488419 52488950 -97028087 + RLTR24 LTR ERV1 5 493 -36 9 985 211 182 121 0 chr6 52488927 52488993 -97028044 + PB1D10 SINE Alu 43 116 -1 9 985 2949 55 40 33 chr6 52489010 52489407 -97027630 + MTB LTR MaLR 1 400 0 9 985 245 98 0 24 chr6 52491344 52491374 -97025663 + (GA)n Simple_repeat Simple_repeat 2 31 0 9 985 624 27 0 0 chr6 52491374 52491448 -97025589 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 9 985 245 98 0 24 chr6 52491448 52491459 -97025578 + (GA)n Simple_repeat Simple_repeat 2 12 0 9 985 21 0 0 0 chr6 52492320 52492341 -97024696 + AT_rich Low_complexity Low_complexity 1 21 0 9 985 370 269 144 36 chr6 52495044 52495183 -97021854 - MER20 DNA MER1_type -62 157 4 9 985 311 184 44 44 chr6 52495222 52495313 -97021724 - L1MB7 LINE L1 -170 6014 5924 9 985 248 275 0 14 chr6 52497208 52497278 -97019759 - ID4 SINE ID -9 74 6 9 985 270 0 0 0 chr6 52498082 52498112 -97018925 + (CAA)n Simple_repeat Simple_repeat 2 31 0 9 985 1196 75 0 0 chr6 52498123 52498270 -97018767 + B1_Mm SINE Alu 1 147 0 9 985 226 50 48 48 chr6 52498273 52498336 -97018701 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 9 985 243 0 0 0 chr6 52498663 52498690 -97018347 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 985 348 24 0 0 chr6 52498690 52498730 -97018307 + (GA)n Simple_repeat Simple_repeat 1 41 0 9 985 278 248 127 9 chr6 52499072 52499182 -97017855 + B1F1 SINE Alu 27 149 0 9 985 633 215 46 0 chr6 52499187 52499317 -97017720 + B1_Mus2 SINE Alu 2 137 -10 9 985 624 202 52 7 chr6 52500632 52500774 -97016263 + B1F SINE Alu 2 148 -1 1 985 390 129 0 0 chr6 52502060 52502122 -97014915 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 985 1365 61 0 0 chr6 52502122 52502302 -97014735 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 3 985 405 0 0 0 chr6 52502741 52502786 -97014251 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 985 212 265 124 29 chr6 52502881 52502986 -97014051 - MIR SINE MIR -27 235 121 5 985 323 191 29 136 chr6 52503119 52503139 -97013898 + MT2B2 LTR ERVL 149 157 -427 6 985 455 247 7 1 chr6 52503139 52503239 -97013798 + B1_Mus1 SINE Alu 2 105 -15 7 985 201 74 0 0 chr6 52503245 52503272 -97013765 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 985 223 115 37 37 chr6 52504321 52504375 -97012662 + (TA)n Simple_repeat Simple_repeat 1 54 0 9 985 21 0 0 0 chr6 52504706 52504727 -97012310 + AT_rich Low_complexity Low_complexity 1 21 0 1 985 471 257 30 0 chr6 52504737 52504838 -97012199 - RSINE1 SINE B4 0 165 62 1 985 203 152 0 0 chr6 52506600 52506633 -97010404 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 1 985 543 16 0 0 chr6 52509372 52509436 -97007601 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 985 738 181 58 0 chr6 52509805 52509943 -97007094 - B1_Mur4 SINE Alu -2 148 3 1 985 22 111 0 0 chr6 52510255 52510354 -97006683 + AT_rich Low_complexity Low_complexity 1 99 0 1 985 343 311 38 0 chr6 52510836 52510942 -97006095 + PB1D10 SINE Alu 1 110 -7 1 985 197 276 34 17 chr6 52511044 52511103 -97005934 - L2b LINE L2 -7 3368 3309 1 985 653 340 101 28 chr6 52511172 52511748 -97005289 + L2b LINE L2 2725 3357 -18 1 985 337 270 40 13 chr6 52512116 52512191 -97004846 - ID SINE ID -147 77 1 1 985 786 115 41 0 chr6 52512624 52512746 -97004291 + B1_Mur3 SINE Alu 15 141 -8 2 985 1662 158 67 89 chr6 52513068 52513429 -97003608 + ORR1B1 LTR MaLR 41 393 -1 2 985 1511 184 179 4 chr6 52513912 52514409 -97002628 + Lx9 LINE L1 7060 7643 -1 2 985 336 182 13 0 chr6 52514801 52514878 -97002159 - Lx9 LINE L1 -2 7642 7565 2 985 520 271 58 22 chr6 52515078 52515301 -97001736 + L1MA8 LINE L1 6053 6283 -8 2 985 519 246 83 43 chr6 52515317 52515547 -97001490 + B4A SINE B4 6 244 -48 2 985 308 24 0 24 chr6 52515569 52515611 -97001426 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 985 180 0 0 0 chr6 52516761 52516781 -97000256 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 985 189 94 0 0 chr6 52520555 52520587 -96996450 + (A)n Simple_repeat Simple_repeat 1 32 0 2 985 947 188 18 71 chr6 52520889 52521113 -96995924 + B3 SINE B2 2 213 -3 2 985 271 302 78 78 chr6 52521680 52521809 -96995228 - MLT1A1 LTR MaLR -191 217 89 3 985 622 179 0 9 chr6 52521944 52522051 -96994986 - MTD LTR MaLR -303 116 11 3 985 318 198 44 55 chr6 52522051 52522142 -96994895 + B3A SINE B2 31 120 -78 3 985 326 270 54 0 chr6 52522188 52522299 -96994738 + PB1D10 SINE Alu 1 117 0 3 985 364 253 187 53 chr6 52522320 52522566 -96994471 - L1MD2 LINE L1 -5313 1327 1049 3 985 274 132 66 0 chr6 52523077 52523153 -96993884 + GA-rich Low_complexity Low_complexity 2 82 0 3 985 502 289 26 0 chr6 52523309 52523461 -96993576 - L1MD2 LINE L1 -6368 179 24 3 985 230 339 88 8 chr6 52523568 52523612 -96993425 + L1ME1 LINE L1 5887 5933 -246 3 985 258 81 0 0 chr6 52523612 52523649 -96993388 + (CATAT)n Simple_repeat Simple_repeat 4 40 0 3 985 230 339 88 8 chr6 52523649 52523842 -96993195 + L1ME1 LINE L1 5934 6142 -37 3 985 571 134 11 11 chr6 52523885 52523988 -96993049 - ORR1D2 LTR MaLR -14 405 280 3 985 228 184 0 0 chr6 52524353 52524402 -96992635 + CT-rich Low_complexity Low_complexity 2 50 0 3 985 352 348 40 75 chr6 52524429 52524656 -96992381 - L1MEd LINE L1 -5811 308 90 4 985 364 242 90 50 chr6 52524668 52524768 -96992269 + PB1D7 SINE Alu 9 112 -8 4 985 267 355 74 68 chr6 52524751 52524786 -96992251 + ZP3AR Satellite Satellite 16 73 -139 4 985 295 262 0 0 chr6 52524786 52524847 -96992190 + ID4_ SINE ID 2 62 -21 4 985 267 355 74 68 chr6 52524847 52524899 -96992138 + ZP3AR Satellite Satellite 74 164 -48 4 985 431 239 118 9 chr6 52525220 52525330 -96991707 + RSINE1 SINE B4 43 164 -1 4 985 278 323 148 8 chr6 52525426 52525554 -96991483 + RSINE1 SINE B4 2 147 -18 4 985 557 184 18 18 chr6 52525614 52525725 -96991312 - B1F2 SINE Alu -1 148 38 4 985 301 226 102 45 chr6 52525655 52525743 -96991294 - MT2B LTR ERVL -338 263 171 4 985 560 253 109 46 chr6 52526588 52526762 -96990275 + ID_B1 SINE B4 34 218 -6 4 985 192 300 117 0 chr6 52527676 52527736 -96989301 - L2b LINE L2 -3 3372 3306 4 985 233 308 39 0 chr6 52527943 52528021 -96989016 + ID4_ SINE ID 3 83 0 5 985 24 0 0 0 chr6 52529859 52529883 -96987154 + AT_rich Low_complexity Low_complexity 1 24 0 5 985 261 0 0 0 chr6 52530191 52530220 -96986817 + (TGGGGG)n Simple_repeat Simple_repeat 3 31 0 5 985 258 204 0 0 chr6 52530226 52530270 -96986767 - PB1D10 SINE Alu -20 97 54 5 985 434 172 32 11 chr6 52530305 52530399 -96986638 - Lx8 LINE L1 -199 7274 7179 5 985 880 109 36 0 chr6 52530479 52530616 -96986421 - B1_Mur4 SINE Alu -8 142 1 5 985 315 0 0 0 chr6 52531032 52531067 -96985970 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 5 985 234 0 0 0 chr6 52531126 52531152 -96985885 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 985 704 211 14 7 chr6 52531188 52531331 -96985706 - B1F2 SINE Alu -5 144 1 5 985 21 36 0 0 chr6 52531427 52531455 -96985582 + AT_rich Low_complexity Low_complexity 1 28 0 5 985 306 263 13 0 chr6 52531518 52531594 -96985443 + ID_B1 SINE B4 146 222 -2 6 985 485 258 152 50 chr6 52531702 52531984 -96985053 - Charlie1 DNA MER1_type -5 2776 2466 6 985 585 303 179 23 chr6 52532033 52532462 -96984575 - Charlie1 DNA MER1_type -390 2391 1896 6 985 466 167 12 12 chr6 52532715 52532800 -96984237 - RMER16 LTR ERVK -83 450 366 6 985 745 218 103 10 chr6 52532839 52533043 -96983994 + ID_B1 SINE B4 1 223 -1 6 985 344 358 79 16 chr6 52533276 52533466 -96983571 - L1M5 LINE L1 -424 5700 5499 6 985 183 42 0 0 chr6 52533467 52533491 -96983546 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 985 297 0 0 0 chr6 52533716 52533749 -96983288 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 985 180 0 0 0 chr6 52535998 52536018 -96981019 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 985 910 91 0 0 chr6 52536033 52536154 -96980883 - B1_Mus2 SINE Alu -9 138 18 6 985 562 241 0 22 chr6 52536654 52536790 -96980247 - B1F SINE Alu -16 133 1 6 985 668 294 10 65 chr6 52537254 52537454 -96979583 + B3A SINE B2 1 189 -9 7 985 183 80 0 0 chr6 52537584 52537609 -96979428 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 7 985 848 184 13 26 chr6 52537832 52537983 -96979054 + B1_Mur2 SINE Alu 1 149 0 7 985 605 158 8 0 chr6 52538375 52538495 -96978542 + GA-rich Low_complexity Low_complexity 3 123 0 7 985 412 306 47 26 chr6 52538882 52539073 -96977964 + B3A SINE B2 2 196 -2 7 985 1008 231 0 14 chr6 52539907 52540126 -96976911 - B3 SINE B2 0 216 1 7 985 246 206 0 0 chr6 52540487 52540560 -96976477 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 985 189 367 0 71 chr6 52540560 52540645 -96976392 + L2a LINE L2 3348 3426 0 7 985 788 276 121 33 chr6 52540746 52541109 -96975928 - MLT1A1 LTR MaLR -12 396 2 7 985 216 0 0 0 chr6 52541272 52541296 -96975741 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 7 985 390 21 0 0 chr6 52541556 52541603 -96975434 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 985 441 293 200 0 chr6 52541608 52541758 -96975279 - ID_B1 SINE B4 -27 197 18 8 985 218 243 52 39 chr6 52542536 52542613 -96974424 + ID SINE ID 10 87 -137 8 985 208 206 16 16 chr6 52544352 52544416 -96972621 + A-rich Low_complexity Low_complexity 2 65 0 8 985 22 0 0 0 chr6 52544498 52544520 -96972517 + AT_rich Low_complexity Low_complexity 1 22 0 8 985 558 13 0 51 chr6 52544653 52544766 -96972271 - L1Md_T LINE L1 0 6582 6505 8 985 246 270 52 39 chr6 52545017 52545094 -96971943 + B1F2 SINE Alu 24 101 -48 8 985 244 297 110 0 chr6 52545141 52545259 -96971778 + B1F1 SINE Alu 4 134 -15 8 985 296 221 128 30 chr6 52545571 52545671 -96971366 - B3A SINE B2 -7 191 74 8 985 1218 266 82 19 chr6 52545899 52546360 -96970677 - Lx6 LINE L1 -26 7434 6945 8 985 629 272 52 89 chr6 52546544 52546780 -96970257 + B4A SINE B4 33 270 -22 9 985 240 111 0 0 chr6 52546780 52546816 -96970221 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 985 629 272 52 89 chr6 52546816 52546849 -96970188 + B4A SINE B4 271 292 0 9 985 471 275 20 68 chr6 52547321 52547469 -96969568 - B1F SINE Alu 0 149 9 9 985 232 340 45 72 chr6 52547392 52547503 -96969534 - B4A SINE B4 -118 174 67 9 985 499 291 21 14 chr6 52547577 52547720 -96969317 - B1F SINE Alu -1 148 5 9 985 423 38 0 0 chr6 52548435 52548488 -96968549 + (CACCC)n Simple_repeat Simple_repeat 5 57 0 9 985 1522 48 0 5 chr6 52548819 52549006 -96968031 + B2_Mm2 SINE B2 2 187 -8 9 985 198 209 0 0 chr6 52549845 52549888 -96967149 + (CATA)n Simple_repeat Simple_repeat 2 44 0 9 985 1072 82 0 20 chr6 52554255 52554404 -96962633 + B1_Mus1 SINE Alu 2 147 -1 9 985 346 262 106 10 chr6 52554945 52555049 -96961988 + PB1D7 SINE Alu 1 114 -6 9 985 323 238 59 44 chr6 52555102 52555238 -96961799 - L1MA10 LINE L1 -9 6325 6188 1 985 210 122 0 75 chr6 52555327 52555354 -96961683 + T-rich Low_complexity Low_complexity 26 51 0 1 985 747 177 0 58 chr6 52555354 52555510 -96961527 - B1_Mm SINE Alu 0 147 1 1 985 210 122 0 75 chr6 52555510 52555535 -96961502 + T-rich Low_complexity Low_complexity 3 25 0 1 985 496 254 17 17 chr6 52555536 52555652 -96961385 - PB1D10 SINE Alu -1 116 1 1 985 589 279 113 14 chr6 52555723 52555945 -96961092 - B4A SINE B4 -22 270 27 1 985 336 174 14 14 chr6 52555965 52556035 -96961002 - L1MB1 LINE L1 -96 6093 6024 1 985 420 291 19 57 chr6 52556042 52556199 -96960838 + RSINE1 SINE B4 15 165 0 1 985 185 316 152 0 chr6 52557525 52557604 -96959433 + L2a LINE L2 3121 3211 -215 1 985 583 266 19 149 chr6 52557960 52558031 -96959006 - B4A SINE B4 -12 280 218 1 985 426 79 0 0 chr6 52558031 52558094 -96958943 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 985 583 266 19 149 chr6 52558094 52558344 -96958693 - B4A SINE B4 -75 217 1 1 985 717 226 262 0 chr6 52558454 52558618 -96958419 + B3 SINE B2 1 207 -9 1 985 1125 73 0 0 chr6 52559363 52559500 -96957537 + B1_Mus2 SINE Alu 1 137 -10 1 985 282 73 0 0 chr6 52559500 52559541 -96957496 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 985 22 35 0 0 chr6 52559547 52559576 -96957461 + AT_rich Low_complexity Low_complexity 1 29 0 1 986 3587 146 179 73 chr6 52559900 52560716 -96956321 - RMER19B LTR ERVK 0 902 1 1 986 365 361 30 8 chr6 52561098 52561232 -96955805 + MIR3 SINE MIR 44 180 -28 1 986 227 349 94 12 chr6 52561774 52561945 -96955092 - MLT1H2 LTR MaLR -304 185 1 1 986 211 326 64 22 chr6 52562105 52562220 -96954817 + MIR SINE MIR 62 186 -82 1 986 289 250 98 0 chr6 52562348 52562440 -96954597 + L1ME3B LINE L1 5730 5830 -410 1 986 346 414 18 9 chr6 52562486 52562598 -96954439 + MER91A DNA Tip100 46 158 -38 1 986 316 290 25 120 chr6 52562608 52562746 -96954291 + PB1D10 SINE Alu 1 121 -26 1 986 235 280 104 52 chr6 52562827 52563038 -96953999 + L1ME3B LINE L1 5841 6062 -178 1 986 226 248 125 27 chr6 52563049 52563161 -96953876 + L1MA5 LINE L1 6173 6295 -5 1 986 335 105 18 0 chr6 52563379 52563436 -96953601 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 986 4989 56 5 0 chr6 52563753 52564375 -96952662 - L1_Mm LINE L1 -765 5118 4494 1 986 466 78 16 0 chr6 52564373 52564430 -96952607 + L1_Mm LINE L1 5529 5586 -297 1 986 8519 49 9 5 chr6 52564430 52565422 -96951615 + L1Md_F2 LINE L1 5587 6582 0 1 986 327 211 14 40 chr6 52565422 52565438 -96951599 + L1_Mm LINE L1 5616 5629 -545 1 986 21 36 0 0 chr6 52565582 52565610 -96951427 + AT_rich Low_complexity Low_complexity 1 28 0 1 986 779 244 73 5 chr6 52565637 52565843 -96951194 + B4A SINE B4 1 220 -72 1 986 339 269 239 30 chr6 52565851 52565985 -96951052 + RSINE1 SINE B4 4 165 0 1 986 260 290 29 39 chr6 52566275 52566379 -96950658 - PB1D7 SINE Alu 0 120 18 1 986 27 0 0 0 chr6 52566407 52566434 -96950603 + AT_rich Low_complexity Low_complexity 1 27 0 1 986 821 225 40 7 chr6 52566806 52566958 -96950079 + RSINE1 SINE B4 3 159 -6 1 986 421 191 55 22 chr6 52566988 52567079 -96949958 + RSINE1 SINE B4 3 96 -69 1 986 189 0 0 0 chr6 52567187 52567208 -96949829 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 986 646 274 117 19 chr6 52567656 52567920 -96949117 + B4A SINE B4 3 292 0 1 986 450 240 57 24 chr6 52567992 52568116 -96948921 + RSINE1 SINE B4 4 131 -34 1 986 23 0 0 0 chr6 52568130 52568153 -96948884 + AT_rich Low_complexity Low_complexity 1 23 0 1 986 333 279 123 19 chr6 52568266 52568372 -96948665 + PB1D10 SINE Alu 1 117 0 1 986 24 53 0 0 chr6 52568438 52568476 -96948561 + AT_rich Low_complexity Low_complexity 1 38 0 1 986 21 0 0 0 chr6 52568716 52568737 -96948300 + AT_rich Low_complexity Low_complexity 1 21 0 1 986 263 360 79 28 chr6 52568787 52569141 -96947896 - L1M5 LINE L1 -2275 3871 3500 1 986 1258 34 0 52 chr6 52569149 52569161 -96947876 - B1_Mm SINE Alu -1 146 136 1 986 261 0 0 0 chr6 52569161 52569190 -96947847 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 986 1258 34 0 52 chr6 52569190 52569331 -96947706 - B1_Mm SINE Alu -12 135 1 1 986 331 267 78 78 chr6 52569392 52569407 -96947630 - B1F2 SINE Alu 0 149 140 1 986 297 0 0 0 chr6 52569407 52569440 -96947597 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 986 331 267 78 78 chr6 52569440 52569566 -96947471 - B1F2 SINE Alu -10 139 8 1 986 796 306 24 5 chr6 52569566 52569650 -96947387 - ID_B1 SINE B4 -10 214 1 1 986 441 306 20 53 chr6 52570980 52571132 -96945905 + B1F SINE Alu 3 149 0 1 986 204 286 85 85 chr6 52573883 52574013 -96943024 + MIRc SINE MIR 3 132 -136 1 986 1472 44 16 47 chr6 52574722 52574913 -96942124 + B2_Mm2 SINE B2 3 187 -8 1 986 439 98 0 52 chr6 52575004 52575101 -96941936 + (GGAGA)n Simple_repeat Simple_repeat 2 93 0 1 986 243 299 124 43 chr6 52575480 52575641 -96941396 - MIR SINE MIR -86 176 3 1 986 1015 290 87 37 chr6 52575921 52576437 -96940600 - L1MB8 LINE L1 0 6178 5637 1 986 697 161 146 0 chr6 52576478 52576608 -96940429 - B1_Mur2 SINE Alu 0 149 1 1 986 355 348 24 58 chr6 52576639 52576822 -96940215 + B4A SINE B4 1 187 -105 1 986 777 244 123 49 chr6 52576889 52577431 -96939606 - L1MB8 LINE L1 -552 5632 5056 1 986 204 40 0 0 chr6 52577443 52577468 -96939569 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 986 1180 212 14 14 chr6 52577473 52577683 -96939354 - B3 SINE B2 -5 211 2 1 986 240 200 0 0 chr6 52578558 52578608 -96938429 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 986 235 308 115 0 chr6 52579664 52579768 -96937269 - MIRc SINE MIR -39 229 114 1 986 26 0 0 0 chr6 52580122 52580148 -96936889 + AT_rich Low_complexity Low_complexity 1 26 0 1 986 248 214 0 35 chr6 52580379 52580437 -96936600 + B3 SINE B2 161 216 0 1 986 292 250 65 13 chr6 52581320 52581397 -96935640 - PB1D10 SINE Alu -24 93 13 1 986 1325 27 0 7 chr6 52581630 52581778 -96935259 + B1_Mm SINE Alu 1 147 0 1 986 217 0 29 29 chr6 52581782 52581816 -96935221 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 986 1555 69 16 0 chr6 52581823 52582011 -96935026 + B2_Mm2 SINE B2 5 195 0 1 986 359 275 126 7 chr6 52582987 52583130 -96933907 - MER58A DNA MER1_type 0 224 65 1 986 496 323 93 35 chr6 52583168 52583425 -96933612 - B4A SINE B4 -6 286 15 1 986 285 350 22 0 chr6 52584416 52584553 -96932484 - Lx9 LINE L1 -225 7419 7280 1 986 300 309 138 30 chr6 52585750 52585917 -96931120 + MIRb SINE MIR 76 260 -8 1 986 279 0 0 0 chr6 52586228 52586259 -96930778 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 986 543 220 135 5 chr6 52586730 52586922 -96930115 - MER44A DNA MER2_type -100 239 23 1 986 21 0 0 0 chr6 52587287 52587308 -96929729 + AT_rich Low_complexity Low_complexity 1 21 0 1 986 258 197 143 13 chr6 52587398 52587475 -96929562 + Lx8 LINE L1 6950 7036 -437 1 986 236 321 36 0 chr6 52587533 52587645 -96929392 + Lx8 LINE L1 7134 7249 -224 1 986 26 30 0 0 chr6 52588053 52588086 -96928951 + AT_rich Low_complexity Low_complexity 1 33 0 1 986 21 57 0 0 chr6 52588439 52588474 -96928563 + AT_rich Low_complexity Low_complexity 1 35 0 1 986 2271 173 45 11 chr6 52591088 52591467 -96925570 + ORR1B1 LTR MaLR 3 394 0 1 986 225 182 0 0 chr6 52591662 52591706 -96925331 + A-rich Low_complexity Low_complexity 4 47 0 1 986 189 0 0 0 chr6 52591854 52591875 -96925162 + (T)n Simple_repeat Simple_repeat 1 21 0 1 986 180 77 0 0 chr6 52592533 52592559 -96924478 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 1 986 373 279 84 92 chr6 52592832 52592843 -96924194 - B4A SINE B4 -74 218 176 1 986 620 218 0 0 chr6 52592843 52592953 -96924084 - B1_Mur1 SINE Alu -38 111 2 1 986 373 279 84 92 chr6 52592953 52592974 -96924063 - B4A SINE B4 -74 175 78 1 986 1109 165 56 258 chr6 52593033 52593587 -96923450 + RMER10A LTR ERVL 1 442 0 1 986 717 92 365 21 chr6 52593868 52594013 -96923024 - B2_Mm2 SINE B2 0 195 1 1 986 1332 81 35 0 chr6 52594027 52594201 -96922836 - B2_Mm2 SINE B2 -14 181 2 1 986 352 257 24 4 chr6 52594622 52594878 -96922159 + (CA)n Simple_repeat Simple_repeat 1 261 0 1 986 198 174 0 0 chr6 52594900 52594946 -96922091 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 986 306 234 9 27 chr6 52594964 52595074 -96921963 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 986 455 253 38 0 chr6 52595113 52595271 -96921766 + (CA)n Simple_repeat Simple_repeat 2 165 0 1 986 210 255 10 31 chr6 52595285 52595382 -96921655 + (CA)n Simple_repeat Simple_repeat 1 95 0 1 986 215 157 20 0 chr6 52595395 52595446 -96921591 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 986 264 59 0 0 chr6 52595518 52595552 -96921485 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 986 207 157 39 19 chr6 52595565 52595617 -96921420 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 986 1238 151 5 9 chr6 52595849 52596063 -96920974 - URR1A DNA MER1_type 0 226 14 1 986 413 264 157 26 chr6 52596200 52596429 -96920608 + L1MDa LINE L1 1307 1565 -5068 1 986 300 83 0 0 chr6 52596900 52596948 -96920089 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 1 986 252 0 0 0 chr6 52596995 52597023 -96920014 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 1 986 180 0 0 0 chr6 52597049 52597069 -96919968 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 986 710 184 98 103 chr6 52597409 52597603 -96919434 + B3A SINE B2 5 197 -1 1 986 1110 95 14 7 chr6 52597619 52597767 -96919270 + B1_Mur4 SINE Alu 2 150 0 1 986 328 211 92 0 chr6 52597944 52598020 -96919017 + L1MC3 LINE L1 6599 6681 -1104 1 986 442 312 16 0 chr6 52598136 52598261 -96918776 + ORR1E LTR MaLR 1 127 -232 1 986 342 0 0 0 chr6 52598334 52598372 -96918665 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 986 308 24 0 24 chr6 52598497 52598539 -96918498 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 986 410 242 21 92 chr6 52599753 52599894 -96917143 - Lx9 LINE L1 -171 7473 7343 1 986 955 240 56 98 chr6 52600012 52600298 -96916739 - B4A SINE B4 -18 274 1 1 986 487 311 32 8 chr6 52600341 52600464 -96916573 - RSINE1 SINE B4 -17 148 23 1 986 1700 119 0 0 chr6 52600708 52600934 -96916103 - URR1A DNA MER1_type 0 226 1 2 986 409 281 72 79 chr6 52601086 52601225 -96915812 - B1_Mur1 SINE Alu 0 149 12 2 986 1018 286 128 27 chr6 52601295 52601669 -96915368 - MER68 LTR ERVL -4 559 148 2 986 4784 141 80 20 chr6 52601689 52602625 -96914412 - L1VL2 LINE L1 -2550 1065 61 2 986 622 214 31 31 chr6 52602647 52602777 -96914260 - B1_Mur1 SINE Alu -18 131 2 2 986 286 337 24 0 chr6 52602802 52602885 -96914152 - MER68 LTR ERVL -446 117 33 2 986 518 281 0 59 chr6 52602886 52603022 -96914015 + B1F2 SINE Alu 1 128 -21 2 986 233 306 68 14 chr6 52603061 52603134 -96913903 + RSINE1 SINE B4 17 93 -72 2 986 708 119 0 0 chr6 52603135 52603244 -96913793 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 2 986 490 318 15 0 chr6 52603244 52603376 -96913661 + B4A SINE B4 83 216 -76 2 986 1043 156 21 31 chr6 52603703 52603895 -96913142 + B2_Mm2 SINE B2 6 195 0 2 986 1271 86 5 0 chr6 52603896 52604081 -96912956 + B2_Mm2 SINE B2 2 193 0 2 986 1591 261 22 3 chr6 52604119 52604484 -96912553 + MTEa LTR MaLR 6 377 -2 2 986 1598 195 68 73 chr6 52605366 52605748 -96911289 - ORR1C2 LTR MaLR -2 382 3 2 986 33 73 0 0 chr6 52606126 52606194 -96910843 + AT_rich Low_complexity Low_complexity 1 68 0 2 986 366 235 9 67 chr6 52606312 52606380 -96910657 + Lx8 LINE L1 6708 6769 -704 2 986 2132 204 29 5 chr6 52606380 52606789 -96910248 - MTD LTR MaLR 0 419 1 2 986 366 235 9 67 chr6 52606789 52606825 -96910212 + Lx8 LINE L1 6770 6806 -667 2 986 2672 149 11 9 chr6 52606914 52607347 -96909690 - RMER4A LTR ERVK 0 466 33 2 986 229 51 0 49 chr6 52607348 52607389 -96909648 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 986 1513 82 0 44 chr6 52607405 52607609 -96909428 + B2_Mm2 SINE B2 1 195 0 2 986 2548 77 6 66 chr6 52607653 52608001 -96909036 + ORR1A2 LTR MaLR 1 327 0 2 986 1200 243 61 159 chr6 52608083 52608606 -96908431 + Lx8 LINE L1 6791 7262 -211 2 986 1395 231 51 90 chr6 52608620 52609109 -96907928 - RLTR12B LTR ERVK -20 508 39 2 986 295 336 56 91 chr6 52609129 52609361 -96907676 + Lx8 LINE L1 7248 7471 -2 2 986 440 337 6 11 chr6 52609423 52609603 -96907434 - MER33 DNA MER1_type -142 182 4 2 986 247 277 0 0 chr6 52610538 52610603 -96906434 + PB1D10 SINE Alu 13 77 -40 2 986 879 112 80 18 chr6 52610583 52610746 -96906291 + B2_Mm2 SINE B2 23 195 0 2 986 313 296 98 104 chr6 52610833 52610949 -96906088 - Lx8 LINE L1 0 7473 7354 2 986 207 100 0 0 chr6 52610949 52610979 -96906058 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 2 986 1184 79 0 0 chr6 52610979 52611118 -96905919 - B1_Mus1 SINE Alu -7 141 3 2 986 313 296 98 104 chr6 52611118 52611328 -96905709 - Lx8 LINE L1 -120 7353 7149 2 986 809 256 78 0 chr6 52611480 52611660 -96905377 - B3A SINE B2 0 198 5 2 986 422 222 100 10 chr6 52611884 52611984 -96905053 - PB1D10 SINE Alu -3 114 6 2 986 814 295 100 16 chr6 52612014 52612316 -96904721 - ORR1D2 LTR MaLR 0 359 21 2 986 214 148 74 0 chr6 52612618 52612672 -96904365 + T-rich Low_complexity Low_complexity 1 58 0 2 986 274 299 0 13 chr6 52612712 52612790 -96904247 - MER63D DNA AcHobo -309 752 676 2 986 365 266 13 0 chr6 52612813 52612892 -96904145 - MER63D DNA AcHobo -978 83 4 2 986 262 296 28 0 chr6 52613482 52613553 -96903484 - ID4_ SINE ID -8 75 3 2 986 180 111 0 0 chr6 52613783 52613810 -96903227 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 986 474 235 98 25 chr6 52613810 52613932 -96903105 - RSINE1 SINE B4 -33 132 2 2 986 230 396 31 10 chr6 52614104 52614201 -96902836 - MLT1K LTR MaLR -332 263 165 2 986 850 156 105 29 chr6 52614913 52614924 -96902113 + B2_Mm1t SINE B2 9 20 -173 2 986 931 69 272 14 chr6 52614924 52615071 -96901966 + B2_Mm2 SINE B2 1 185 -10 2 986 998 55 7 16 chr6 52615071 52615208 -96901829 + B2_Mm2 SINE B2 21 154 -39 2 986 614 37 0 12 chr6 52615208 52615290 -96901747 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 986 850 156 105 29 chr6 52615290 52615312 -96901725 + B2_Mm1t SINE B2 155 192 -1 2 986 216 0 0 0 chr6 52615785 52615809 -96901228 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 986 724 163 30 15 chr6 52615809 52615940 -96901097 - B1_Mur1 SINE Alu -14 135 3 2 986 378 333 14 42 chr6 52616010 52616154 -96900883 + Charlie2a DNA MER1_type 179 318 -2543 2 986 357 274 48 78 chr6 52616351 52616517 -96900520 + Charlie2a DNA MER1_type 1517 1677 -1184 2 986 324 301 137 8 chr6 52616644 52616768 -96900269 + B1F1 SINE Alu 1 140 -9 2 986 555 16 0 0 chr6 52616770 52616834 -96900203 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 986 305 279 101 65 chr6 52616834 52616845 -96900192 + ID_B1 SINE B4 216 224 0 2 986 229 349 11 34 chr6 52616881 52616970 -96900067 + BC1_Mm scRNA scRNA 10 96 -56 2 986 212 185 19 0 chr6 52618020 52618074 -96898963 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 986 1000 138 0 27 chr6 52618580 52618729 -96898308 - B1_Mus1 SINE Alu 0 148 4 2 986 252 297 31 84 chr6 52619294 52619470 -96897567 + MT2B2 LTR ERVL 98 260 -341 2 986 672 266 20 5 chr6 52619371 52619525 -96897512 + ID_B1 SINE B4 85 245 -47 2 986 327 104 0 0 chr6 52619525 52619573 -96897464 + (GGGA)n Simple_repeat Simple_repeat 2 49 0 2 986 396 0 0 0 chr6 52619860 52619904 -96897133 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2 986 836 61 61 0 chr6 52619904 52620019 -96897018 - B1_Mus1 SINE Alu -1 147 26 2 986 1113 86 0 7 chr6 52620016 52620169 -96896868 - B2_Mm2 SINE B2 -41 154 3 2 986 440 285 72 49 chr6 52620274 52620429 -96896608 + B3A SINE B2 4 153 -45 2 986 318 261 11 74 chr6 52620644 52620739 -96896298 - MER31A LTR ERV1 -382 103 15 2 986 210 0 98 24 chr6 52620871 52620912 -96896125 + (TTATA)n Simple_repeat Simple_repeat 3 46 0 2 986 308 234 16 0 chr6 52621021 52621085 -96895952 - B3 SINE B2 -151 65 1 2 986 327 275 0 24 chr6 52621253 52621335 -96895702 + ID4_ SINE ID 2 81 -2 2 986 180 111 0 0 chr6 52621335 52621362 -96895675 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 2 986 273 290 14 0 chr6 52621875 52621944 -96895093 - MER45B DNA Tip100 0 1040 971 2 986 612 227 8 0 chr6 52621964 52622083 -96894954 + RSINE1 SINE B4 2 121 -44 2 986 1986 187 54 32 chr6 52622087 52622495 -96894542 + MTC LTR MaLR 5 421 0 2 986 715 277 91 35 chr6 52622593 52622911 -96894126 - MER45B DNA Tip100 -279 761 426 2 986 344 304 61 0 chr6 52622913 52623028 -96894009 + B3A SINE B2 71 192 -6 2 986 275 333 86 77 chr6 52625261 52625482 -96891555 + ORR1E LTR MaLR 4 226 -133 2 986 21 0 0 0 chr6 52625560 52625581 -96891456 + AT_rich Low_complexity Low_complexity 1 21 0 2 986 720 301 136 34 chr6 52625658 52625981 -96891056 - MTEa LTR MaLR -23 356 1 2 986 880 157 174 26 chr6 52626333 52626523 -96890514 - URR1B DNA MER1_type -5 220 3 2 986 930 190 200 6 chr6 52626613 52626788 -96890249 - B3 SINE B2 -7 209 1 2 986 224 209 23 0 chr6 52626826 52626869 -96890168 - ID4 SINE ID -2 81 38 2 986 27 0 0 0 chr6 52627419 52627446 -96889591 + AT_rich Low_complexity Low_complexity 1 27 0 2 986 987 236 5 5 chr6 52627462 52627662 -96889375 + B3 SINE B2 6 205 -11 2 986 312 27 0 0 chr6 52627752 52627789 -96889248 + (T)n Simple_repeat Simple_repeat 1 37 0 2 986 1245 82 0 0 chr6 52627789 52627936 -96889101 - B1_Mm SINE Alu 0 147 1 2 986 351 0 0 0 chr6 52628980 52629019 -96888018 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 986 366 61 0 0 chr6 52629301 52629350 -96887687 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 986 550 179 104 0 chr6 52629818 52629924 -96887113 + RSINE1 SINE B4 16 132 -33 2 986 387 248 0 45 chr6 52630144 52630411 -96886626 + GA-rich Low_complexity Low_complexity 1 254 0 2 986 4434 144 56 187 chr6 52630750 52631513 -96885524 + RLTR25A LTR ERVK 1 809 -294 2 986 243 0 0 0 chr6 52631513 52631540 -96885497 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 986 4434 144 56 187 chr6 52631540 52632045 -96884992 + RLTR25A LTR ERVK 810 1103 0 2 986 244 307 80 0 chr6 52632481 52632556 -96884481 + ID4_ SINE ID 3 83 0 2 986 281 152 50 17 chr6 52632577 52632637 -96884400 + L1MA7 LINE L1 6230 6291 0 2 986 303 295 104 10 chr6 52632641 52632737 -96884300 + PB1D7 SINE Alu 1 105 -15 2 986 240 350 104 52 chr6 52632797 52633008 -96884029 - MIRb SINE MIR -11 257 36 2 986 1204 62 0 7 chr6 52633374 52633510 -96883527 + B1_Mm SINE Alu 3 137 -10 2 986 252 0 0 0 chr6 52633510 52633538 -96883499 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 986 728 272 98 46 chr6 52633654 52633725 -96883312 - MLT1A0 LTR MaLR -11 354 271 2 986 966 87 0 0 chr6 52633725 52633863 -96883174 + (GGGA)n Simple_repeat Simple_repeat 4 141 0 2 986 728 272 98 46 chr6 52633863 52634118 -96882919 - MLT1A0 LTR MaLR -95 270 11 2 986 300 256 12 37 chr6 52634957 52635038 -96881999 - B1F1 SINE Alu -2 147 69 2 986 356 88 18 0 chr6 52636083 52636140 -96880897 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 986 894 280 70 77 chr6 52636144 52636349 -96880688 - B4A SINE B4 -8 284 84 2 986 858 185 0 7 chr6 52636349 52636485 -96880552 - B1_Mus2 SINE Alu -12 135 1 2 986 894 280 70 77 chr6 52636485 52636565 -96880472 - B4A SINE B4 -209 83 1 2 986 434 245 28 28 chr6 52636574 52636683 -96880354 - ID_B1 SINE B4 0 224 116 2 986 612 252 41 27 chr6 52637739 52637886 -96879151 - ID_B1 SINE B4 -68 156 8 2 986 248 341 0 12 chr6 52637926 52638009 -96879028 - ID4_ SINE ID -1 82 1 2 986 406 253 0 0 chr6 52638759 52638842 -96878195 + PB1D10 SINE Alu 1 83 -34 2 986 241 209 179 0 chr6 52639565 52639632 -96877405 + B3 SINE B2 134 212 -4 2 986 996 214 45 0 chr6 52639876 52640077 -96876960 + B3 SINE B2 1 210 -6 2 986 451 319 0 34 chr6 52640172 52640289 -96876748 + PB1D10 SINE Alu 2 114 -3 2 986 2125 220 5 5 chr6 52640310 52640717 -96876320 - MTD LTR MaLR 0 419 13 2 986 307 250 170 0 chr6 52640854 52640966 -96876071 - B1F SINE Alu 0 149 19 3 986 219 146 0 0 chr6 52641815 52641856 -96875181 + (C)n Simple_repeat Simple_repeat 1 41 0 3 986 402 297 36 9 chr6 52641884 52641996 -96875041 - B1F1 SINE Alu -34 115 1 3 986 233 288 14 0 chr6 52642343 52642416 -96874621 + L1M5 LINE L1 5494 5567 -606 3 986 225 65 0 0 chr6 52642592 52642623 -96874414 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 986 2607 183 73 58 chr6 52643168 52643765 -96873272 + RMER6C LTR ERVK 6 615 -75 3 986 3340 53 5 20 chr6 52643765 52644167 -96872870 + MTA_Mm LTR MaLR 1 396 0 3 986 2607 183 73 58 chr6 52644167 52644241 -96872796 + RMER6C LTR ERVK 616 687 -3 3 986 372 255 65 9 chr6 52644535 52644642 -96872395 + PB1D7 SINE Alu 2 114 -6 3 986 298 242 65 0 chr6 52644654 52644716 -96872321 + ID4_ SINE ID 4 69 -14 3 986 1337 71 53 0 chr6 52644787 52644957 -96872080 + B2_Mm1t SINE B2 1 179 -14 3 986 380 134 305 51 chr6 52645043 52645161 -96871876 + B2_Mm2 SINE B2 47 194 -1 3 986 495 0 0 0 chr6 52646440 52646495 -96870542 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 986 1231 108 36 46 chr6 52646558 52646752 -96870285 - B2_Mm2 SINE B2 -3 192 1 3 986 504 294 0 62 chr6 52646755 52646900 -96870137 - ID_B1 SINE B4 0 224 89 3 986 487 238 0 9 chr6 52647367 52647473 -96869564 + PB1D10 SINE Alu 5 109 -8 3 986 286 278 0 0 chr6 52647485 52647539 -96869498 + ID4 SINE ID 2 55 -28 3 986 404 260 77 0 chr6 52647656 52647760 -96869277 + PB1D10 SINE Alu 1 112 -5 3 986 282 294 69 0 chr6 52648661 52648763 -96868274 + PB1D10 SINE Alu 1 109 -8 3 986 354 267 10 19 chr6 52648814 52648917 -96868120 + L1ME2z LINE L1 6335 6436 -8 3 986 712 224 0 52 chr6 52649043 52649198 -96867839 + B1_Mus1 SINE Alu 2 148 0 3 986 960 272 69 14 chr6 52649400 52649676 -96867361 + B4 SINE B4 2 292 0 3 986 363 191 15 0 chr6 52649709 52649777 -96867260 - PB1D10 SINE Alu -1 116 48 3 986 330 45 0 0 chr6 52649812 52649856 -96867181 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 986 258 325 44 38 chr6 52649917 52650077 -96866960 - MIR SINE MIR -2 260 100 3 986 23 0 0 0 chr6 52650271 52650294 -96866743 + AT_rich Low_complexity Low_complexity 1 23 0 3 986 405 0 0 0 chr6 52650308 52650353 -96866684 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 986 189 0 0 0 chr6 52650352 52650373 -96866664 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 986 1006 225 22 0 chr6 52650373 52650551 -96866486 - B3 SINE B2 -34 182 1 3 986 30 27 0 0 chr6 52650588 52650625 -96866412 + AT_rich Low_complexity Low_complexity 1 37 0 3 986 554 248 33 0 chr6 52650836 52650957 -96866080 - B1F2 SINE Alu -3 146 22 3 986 5728 61 12 0 chr6 52651204 52651895 -96865142 - L1_Mus3 LINE L1 -8 6630 5932 3 986 339 25 0 0 chr6 52652025 52652065 -96864972 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 986 898 326 48 66 chr6 52652179 52652636 -96864401 - MLT1C LTR MaLR -8 459 11 3 986 255 163 45 49 chr6 52652643 52652714 -96864323 + L1MC4a LINE L1 7812 7869 -13 3 986 265 197 36 14 chr6 52653050 52653121 -96863916 + PB1D10 SINE Alu 26 106 -21 3 986 300 304 60 86 chr6 52653285 52653436 -96863601 + LTR33 LTR ERVL 24 170 -345 3 986 591 303 5 112 chr6 52653665 52653765 -96863272 + ID SINE ID 1 79 -145 3 986 519 302 0 17 chr6 52653765 52653883 -96863154 + PB1D10 SINE Alu 1 116 -1 3 986 300 261 25 0 chr6 52653975 52654045 -96862992 + PB1D10 SINE Alu 45 125 -2 3 986 524 176 22 11 chr6 52654621 52654725 -96862312 + B1F2 SINE Alu 1 106 -43 3 986 376 283 71 0 chr6 52654947 52655046 -96861991 + PB1D10 SINE Alu 11 116 -1 3 986 244 367 13 0 chr6 52655559 52655638 -96861399 - ID4 SINE ID -1 82 3 3 986 333 350 21 35 chr6 52655649 52655794 -96861243 - ID_B1 SINE B4 -3 221 79 3 986 593 221 91 61 chr6 52656106 52656304 -96860733 + ID_B1 SINE B4 12 215 -9 3 986 467 241 0 85 chr6 52656309 52656427 -96860610 + PB1D10 SINE Alu 3 110 -7 3 986 3233 54 5 32 chr6 52656448 52656853 -96860184 + MTA_Mm LTR MaLR 3 396 0 3 986 237 325 89 81 chr6 52656853 52656977 -96860060 + PB1 SINE Alu 3 127 0 3 986 466 225 0 0 chr6 52656992 52657072 -96859965 + ID4 SINE ID 2 81 -2 3 986 1039 286 140 90 chr6 52657490 52658202 -96858835 - LTR41 LTR ERVL 0 768 21 3 986 183 42 0 0 chr6 52658272 52658296 -96858741 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 986 602 246 11 1 chr6 52658328 52658461 -96858576 + B3 SINE B2 57 198 0 3 986 211 133 0 0 chr6 52658526 52658556 -96858481 - B1F2 SINE Alu -113 36 7 3 986 257 165 101 45 chr6 52658532 52658563 -96858474 - MT2B2 LTR ERVL -297 287 257 3 986 335 41 20 0 chr6 52658563 52658612 -96858425 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 3 986 257 165 101 45 chr6 52658612 52658669 -96858368 - MT2B2 LTR ERVL -328 256 194 3 986 338 115 0 19 chr6 52658631 52658684 -96858353 - PB1D10 SINE Alu -43 74 23 3 986 506 218 197 24 chr6 52658747 52658874 -96858163 - B1_Mur2 SINE Alu 0 149 1 3 986 539 301 14 20 chr6 52659368 52659514 -96857523 + RSINE1 SINE B4 2 146 -19 3 986 867 121 0 0 chr6 52659516 52659656 -96857381 + (CA)n Simple_repeat Simple_repeat 2 141 0 3 986 635 216 96 7 chr6 52659735 52659870 -96857167 + B1_Mur1 SINE Alu 1 147 -2 3 986 27 49 0 0 chr6 52659873 52659914 -96857123 + AT_rich Low_complexity Low_complexity 1 41 0 3 986 305 222 161 0 chr6 52660210 52660291 -96856746 + MER46C DNA MER2_type 193 286 -52 3 986 234 128 0 0 chr6 52660578 52660617 -96856420 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 3 986 359 124 12 34 chr6 52660624 52660690 -96856347 - B2_Mm2 SINE B2 -83 115 46 3 986 1468 68 6 17 chr6 52660756 52660936 -96856101 - B2_Mm1t SINE B2 -14 179 2 3 986 227 288 35 70 chr6 52661107 52661193 -96855844 - RSINE1 SINE B4 -66 99 17 3 986 412 219 12 0 chr6 52661117 52661199 -96855838 - B3A SINE B2 -107 91 9 3 986 485 131 12 0 chr6 52661259 52661343 -96855694 + (TTTC)n Simple_repeat Simple_repeat 2 86 0 3 986 1294 42 0 0 chr6 52661347 52661489 -96855548 - B1_Mus1 SINE Alu -5 143 2 3 986 817 183 147 11 chr6 52661594 52661771 -96855266 - ID_B1 SINE B4 -21 203 3 3 986 1874 192 23 59 chr6 52662025 52662475 -96854562 + Lx4B LINE L1 6625 7054 -4 3 986 216 67 0 0 chr6 52662693 52662723 -96854314 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 986 186 103 0 0 chr6 52663184 52663213 -96853824 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 986 952 207 85 5 chr6 52665212 52665401 -96851636 - B3 SINE B2 -12 204 1 3 986 28 29 0 0 chr6 52665417 52665452 -96851585 + AT_rich Low_complexity Low_complexity 1 35 0 3 986 346 140 9 0 chr6 52665460 52665524 -96851513 - B2_Mm2 SINE B2 -102 114 47 3 986 1116 112 99 0 chr6 52665537 52665698 -96851339 - B2_Mm1t SINE B2 -14 179 3 3 986 368 176 204 44 chr6 52665796 52665909 -96851128 - B1_Mur2 SINE Alu -18 131 1 3 986 376 276 24 65 chr6 52666112 52666236 -96850801 + PB1D7 SINE Alu 1 119 -1 3 986 189 0 0 0 chr6 52666489 52666510 -96850527 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 986 192 111 0 0 chr6 52666513 52666549 -96850488 + (T)n Simple_repeat Simple_repeat 1 36 0 3 986 537 260 8 31 chr6 52666550 52666677 -96850360 - B1_Mur2 SINE Alu 0 149 26 3 986 1222 64 0 0 chr6 52666994 52667135 -96849902 - B1_Mus2 SINE Alu -6 141 1 3 986 1161 184 32 0 chr6 52667480 52667698 -96849339 - URR1B DNA MER1_type 0 225 1 3 986 821 277 110 38 chr6 52668290 52668553 -96848484 - B4A SINE B4 0 292 11 3 986 270 0 0 0 chr6 52668559 52668589 -96848448 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 986 414 221 76 9 chr6 52669004 52669109 -96847928 - PB1D10 SINE Alu -5 112 1 3 986 320 267 139 0 chr6 52669150 52669236 -96847801 - B1F1 SINE Alu -51 98 1 3 986 348 234 35 26 chr6 52669541 52669655 -96847382 + PB1D10 SINE Alu 1 115 -2 3 986 516 268 19 56 chr6 52669830 52669992 -96847045 - RSINE1 SINE B4 0 165 10 3 986 705 191 104 10 chr6 52670016 52670217 -96846820 - Lx9 LINE L1 -2 7642 7423 3 986 183 42 0 0 chr6 52670288 52670312 -96846725 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 986 180 244 44 0 chr6 52670558 52670603 -96846434 - MER5B DNA MER1_type -125 53 7 3 986 209 200 0 0 chr6 52670803 52670843 -96846194 + CT-rich Low_complexity Low_complexity 2 41 0 3 986 262 209 72 29 chr6 52671144 52671213 -96845824 - ID4_ SINE ID -9 74 3 3 986 311 0 0 25 chr6 52671540 52671580 -96845457 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 986 481 314 8 0 chr6 52671597 52671715 -96845322 - RSINE1 SINE B4 -43 122 4 3 986 284 271 151 44 chr6 52673532 52673684 -96843353 - L1M4c LINE L1 -4821 1563 1377 3 986 306 296 0 73 chr6 52673684 52673808 -96843229 - PB1D10 SINE Alu -2 115 1 3 986 284 271 151 44 chr6 52673808 52673906 -96843131 - L1M4c LINE L1 -5008 1376 1286 3 986 352 232 73 0 chr6 52673965 52674047 -96842990 - PB1D10 SINE Alu -21 96 9 3 986 23 0 0 0 chr6 52674127 52674150 -96842887 + AT_rich Low_complexity Low_complexity 1 23 0 3 986 619 250 27 14 chr6 52674189 52674335 -96842702 - RSINE1 SINE B4 0 165 18 4 986 280 204 96 17 chr6 52674389 52674504 -96842533 - L1M3de LINE L1 -4722 1931 1808 4 986 231 266 0 71 chr6 52675706 52675791 -96841246 + RSINE1 SINE B4 86 164 -1 4 986 25 31 0 0 chr6 52675913 52675945 -96841092 + AT_rich Low_complexity Low_complexity 1 32 0 4 986 1250 216 78 20 chr6 52676259 52676514 -96840523 + B4A SINE B4 1 270 -22 4 986 2795 41 0 0 chr6 52676731 52677069 -96839968 - ORR1A1 LTR MaLR -8 338 1 4 986 399 227 17 26 chr6 52677996 52678128 -96838909 - ORR1D1 LTR MaLR -14 405 284 4 986 277 164 109 0 chr6 52678211 52678266 -96838771 + ID2 SINE ID 14 74 -9 4 986 843 263 14 18 chr6 52678841 52679058 -96837979 + B3 SINE B2 1 216 0 4 986 583 282 8 0 chr6 52679581 52679705 -96837332 - B4A SINE B4 -6 286 162 4 986 384 267 29 38 chr6 52681146 52681251 -96835786 + PB1D10 SINE Alu 1 104 -13 4 986 556 165 0 52 chr6 52681387 52681483 -96835554 - 5S rRNA rRNA -30 91 1 4 986 21 71 0 0 chr6 52681611 52681653 -96835384 + AT_rich Low_complexity Low_complexity 1 42 0 4 986 1886 264 45 50 chr6 52682426 52683032 -96834005 - RLTR18 LTR ERVK -1 615 13 4 986 360 64 0 0 chr6 52683408 52683455 -96833582 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 986 293 228 40 0 chr6 52683461 52683562 -96833475 + (TA)n Simple_repeat Simple_repeat 1 105 0 4 986 412 261 25 25 chr6 52683563 52683746 -96833291 - B3A SINE B2 -9 186 2 4 986 363 223 93 14 chr6 52683847 52683963 -96833074 - B1F SINE Alu -22 125 6 4 986 278 337 43 0 chr6 52683882 52683974 -96833063 - B4 SINE B4 -118 174 79 4 986 263 199 72 174 chr6 52684165 52684290 -96832747 + B1F1 SINE Alu 8 127 0 4 986 303 325 8 26 chr6 52684759 52684876 -96832161 - PB1D10 SINE Alu -2 115 1 4 986 25 31 0 0 chr6 52685304 52685336 -96831701 + AT_rich Low_complexity Low_complexity 1 32 0 4 986 243 306 70 53 chr6 52685432 52685546 -96831491 + PB1D10 SINE Alu 2 117 0 4 986 389 301 131 85 chr6 52685552 52685628 -96831409 + B4A SINE B4 1 69 -223 4 986 3897 5 0 0 chr6 52685628 52686059 -96830978 - L1Md_A LINE L1 0 6582 6152 4 986 389 301 131 85 chr6 52686059 52686218 -96830819 + B4A SINE B4 70 247 -45 4 986 1028 131 0 0 chr6 52686463 52686608 -96830429 + B1_Mus1 SINE Alu 2 146 -2 4 986 804 194 0 14 chr6 52686620 52686761 -96830276 - B1_Mur4 SINE Alu -2 148 10 4 986 263 279 122 80 chr6 52687209 52687468 -96829569 - MLT1F1 LTR MaLR -81 488 181 4 986 461 292 38 23 chr6 52687695 52687828 -96829209 - RSINE1 SINE B4 -2 163 29 4 986 276 324 125 59 chr6 52688046 52688302 -96828735 + B4 SINE B4 3 275 -17 4 986 218 320 12 104 chr6 52688783 52688947 -96828090 + B2_Mm2 SINE B2 42 190 -5 4 986 22 35 0 0 chr6 52689280 52689309 -96827728 + AT_rich Low_complexity Low_complexity 1 29 0 4 986 210 230 164 90 chr6 52689321 52689337 -96827700 - B4 SINE B4 -148 144 1 4 986 598 207 0 17 chr6 52689337 52689455 -96827582 - B3 SINE B2 -100 116 1 4 986 243 259 128 12 chr6 52689842 52689928 -96827109 - B3A SINE B2 -1 197 102 4 986 549 0 0 0 chr6 52689939 52690000 -96827037 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 4 986 214 318 0 96 chr6 52690054 52690077 -96826960 - B1F SINE Alu -75 74 9 4 986 231 229 20 40 chr6 52690077 52690127 -96826910 - ID_B1 SINE B4 -86 138 90 4 986 396 0 0 0 chr6 52690695 52690739 -96826298 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 986 676 216 14 7 chr6 52690756 52690896 -96826141 - B1_Mur2 SINE Alu -8 141 1 4 987 25 24 0 23 chr6 52691509 52691528 -96825509 + AT_rich Low_complexity Low_complexity 1 19 0 4 987 599 210 70 28 chr6 52691528 52691670 -96825367 + B1_Mur4 SINE Alu 2 149 -1 4 987 25 24 0 23 chr6 52691670 52691693 -96825344 + AT_rich Low_complexity Low_complexity 1 23 0 4 987 567 296 0 76 chr6 52692984 52693156 -96823881 - RSINE1 SINE B4 -4 161 3 4 987 984 243 16 0 chr6 52693779 52693964 -96823073 - B3 SINE B2 -27 189 2 4 987 393 75 0 0 chr6 52694831 52694884 -96822153 + (CATA)n Simple_repeat Simple_repeat 2 54 0 4 987 279 0 0 0 chr6 52695659 52695690 -96821347 + (T)n Simple_repeat Simple_repeat 1 31 0 4 987 405 0 0 0 chr6 52695854 52695899 -96821138 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 987 423 162 12 36 chr6 52696136 52696219 -96820818 - B1_Mur1 SINE Alu 0 149 69 4 987 568 272 8 8 chr6 52696253 52696379 -96820658 + B1_Mur4 SINE Alu 2 127 -23 4 987 919 230 26 21 chr6 52696385 52696576 -96820461 - B3 SINE B2 -18 198 7 4 987 49 18 0 0 chr6 52696590 52696646 -96820391 + AT_rich Low_complexity Low_complexity 1 56 0 4 987 878 274 58 15 chr6 52697103 52697362 -96819675 - B4A SINE B4 -7 285 16 4 987 259 238 0 16 chr6 52697897 52697961 -96819076 - B3 SINE B2 0 216 154 4 987 212 209 23 0 chr6 52698843 52698886 -96818151 + (TATG)n Simple_repeat Simple_repeat 1 44 0 4 987 584 255 29 46 chr6 52698970 52699143 -96817894 - B4A SINE B4 -80 212 43 4 987 248 191 156 16 chr6 52699339 52699403 -96817634 - ID4 SINE ID -3 80 8 4 987 186 71 0 0 chr6 52699470 52699498 -96817539 + (TTGG)n Simple_repeat Simple_repeat 1 28 0 4 987 7412 80 7 4 chr6 52699591 52700673 -96816364 + L1_Mm LINE L1 3900 4985 -898 4 987 1525 274 116 13 chr6 52701616 52702236 -96814801 - Lx8 LINE L1 -160 7313 6630 4 987 665 245 101 35 chr6 52702264 52702492 -96814545 - Lx8 LINE L1 -953 6520 6278 4 987 365 259 103 48 chr6 52703690 52703836 -96813201 + Charlie1a DNA MER1_type 530 683 -772 4 987 252 318 72 72 chr6 52704186 52704393 -96812644 + L2a LINE L2 3219 3425 -1 4 987 188 0 74 0 chr6 52704924 52704951 -96812086 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 987 382 263 64 50 chr6 52705008 52705148 -96811889 - B3A SINE B2 -56 142 1 4 987 502 220 20 10 chr6 52705154 52705255 -96811782 - B1F SINE Alu -10 139 38 4 987 924 260 29 5 chr6 52705273 52705482 -96811555 - B3 SINE B2 0 216 3 4 987 385 269 19 9 chr6 52705982 52706087 -96810950 - B1_Mm SINE Alu -9 138 33 4 987 269 222 36 36 chr6 52706132 52706216 -96810821 - L1M5 LINE L1 -1498 4648 4565 4 987 3408 23 5 2 chr6 52706299 52706694 -96810343 - MTA_Mm LTR MaLR 0 396 1 4 987 308 161 16 0 chr6 52706799 52706861 -96810176 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 987 201 171 0 0 chr6 52706930 52706965 -96810072 + T-rich Low_complexity Low_complexity 1 35 0 4 987 1153 70 0 0 chr6 52706967 52707109 -96809928 - B1_Mus1 SINE Alu -5 143 2 4 987 28 0 0 0 chr6 52708461 52708489 -96808548 + AT_rich Low_complexity Low_complexity 1 28 0 4 987 399 135 360 40 chr6 52708512 52708612 -96808425 + B1_Mus1 SINE Alu 2 133 -15 4 987 646 236 20 14 chr6 52709030 52709176 -96807861 - B1_Mm SINE Alu 0 147 1 4 987 201 284 112 47 chr6 52710236 52710343 -96806694 - MIR SINE MIR -132 130 17 4 987 596 323 62 4 chr6 52710448 52710675 -96806362 - MER119 DNA MER1_type -192 391 152 4 987 355 306 72 101 chr6 52711549 52711873 -96805164 - L1MB8 LINE L1 -88 6090 5772 4 987 1158 174 19 5 chr6 52711873 52712086 -96804951 - B3 SINE B2 0 216 1 4 987 304 304 71 104 chr6 52712086 52712159 -96804878 - L1MB8 LINE L1 -403 5771 5706 4 987 228 67 0 0 chr6 52712598 52712628 -96804409 + (TCC)n Simple_repeat Simple_repeat 2 31 0 4 987 1071 203 15 19 chr6 52712663 52712869 -96804168 - B3 SINE B2 -11 205 1 4 987 343 213 0 0 chr6 52713158 52713219 -96803818 - HAL1-3A_ME LINE L1 -822 2036 1976 4 987 378 0 0 0 chr6 52713256 52713298 -96803739 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 987 798 232 5 38 chr6 52713298 52713482 -96803555 - B3A SINE B2 -16 182 5 4 987 1210 173 213 13 chr6 52713482 52713787 -96803250 - ORR1D1 LTR MaLR -8 366 1 4 987 682 241 127 10 chr6 52714217 52714414 -96802623 + Tigger7 DNA MER2_type 176 395 -2096 4 987 764 194 29 0 chr6 52714414 52714553 -96802484 + B1_Mur4 SINE Alu 1 143 -7 4 987 305 314 92 7 chr6 52714647 52714788 -96802249 + Tigger7 DNA MER2_type 2331 2483 -8 4 987 309 51 0 0 chr6 52717012 52717051 -96799986 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 987 22 56 0 0 chr6 52717270 52717306 -96799731 + AT_rich Low_complexity Low_complexity 1 36 0 4 987 579 259 215 4 chr6 52717496 52717733 -96799304 + B4A SINE B4 1 287 -5 4 987 270 264 114 70 chr6 52720954 52721068 -96795969 + B3 SINE B2 66 184 -32 4 987 2410 157 32 7 chr6 52722563 52722974 -96794063 + MTC LTR MaLR 1 421 0 4 987 306 342 0 0 chr6 52723046 52723119 -96793918 + tRNA-Ala-GCY_ tRNA tRNA 3 75 0 4 987 2043 178 30 12 chr6 52723297 52723700 -96793337 - MTC LTR MaLR 0 421 12 4 987 974 162 0 13 chr6 52730163 52730313 -96786724 + B1_Mur2 SINE Alu 1 148 -1 4 987 338 247 105 21 chr6 52731373 52731468 -96785569 - PB1D10 SINE Alu -12 105 3 4 987 654 193 106 69 chr6 52731517 52731706 -96785331 - B3A SINE B2 -1 197 2 4 987 456 200 9 21 chr6 52731718 52731832 -96785205 - B1F SINE Alu -8 141 3 4 987 189 0 0 0 chr6 52732033 52732054 -96784983 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 987 180 0 0 0 chr6 52732054 52732074 -96784963 + (T)n Simple_repeat Simple_repeat 1 20 0 4 987 1186 48 7 0 chr6 52732074 52732219 -96784818 - B1_Mm SINE Alu 0 147 2 5 987 671 236 224 0 chr6 52732259 52732433 -96784604 + B3 SINE B2 1 213 -3 5 987 544 254 0 0 chr6 52732896 52733006 -96784031 - PB1D10 SINE Alu -7 110 1 5 987 727 263 71 58 chr6 52733399 52733625 -96783412 - B4A SINE B4 0 292 64 5 987 228 241 34 17 chr6 52733747 52733806 -96783231 - RSINE1 SINE B4 0 165 106 5 987 444 316 171 60 chr6 52733775 52734027 -96783010 - B4 SINE B4 -11 281 2 5 987 1384 176 176 69 chr6 52734144 52734491 -96782546 + ORR1C2 LTR MaLR 1 384 0 5 987 468 232 35 26 chr6 52734493 52734608 -96782429 + ORR1C2-int LTR MaLR 2 117 -1392 5 987 1484 203 107 23 chr6 52734583 52735044 -96781993 + ORR1C2-int LTR MaLR 748 1369 -1 5 987 991 272 104 3 chr6 52735045 52735211 -96781826 + ORR1C2 LTR MaLR 1 173 -205 5 987 243 0 0 0 chr6 52735211 52735238 -96781799 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 987 991 272 104 3 chr6 52735238 52735388 -96781649 + ORR1C2 LTR MaLR 174 348 -30 5 987 243 317 38 38 chr6 52735694 52735799 -96781238 + L2c LINE L2 3055 3159 -228 5 987 303 167 0 0 chr6 52736571 52736637 -96780400 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 5 987 520 231 68 8 chr6 52737670 52737788 -96779249 + PB1 SINE Alu 1 125 -2 5 987 829 270 31 11 chr6 52737791 52737982 -96779055 + B3A SINE B2 4 198 0 5 987 247 250 0 18 chr6 52738033 52738090 -96778947 + B4 SINE B4 29 84 -208 5 987 333 0 0 0 chr6 52738307 52738344 -96778693 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 5 987 741 133 19 0 chr6 52738603 52738761 -96778276 + (CA)n Simple_repeat Simple_repeat 1 161 0 5 987 347 333 42 21 chr6 52738836 52739026 -96778011 + MIRb SINE MIR 45 238 -30 5 987 360 111 0 0 chr6 52739195 52739249 -96777788 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 987 627 257 59 0 chr6 52739589 52739725 -96777312 - ID_B1 SINE B4 0 224 81 5 987 196 330 39 10 chr6 52740601 52740705 -96776332 + MIRb SINE MIR 37 143 -125 5 987 2228 80 94 0 chr6 52741184 52741483 -96775554 + ORR1A2 LTR MaLR 1 327 0 5 987 1715 26 0 0 chr6 52743638 52743831 -96773206 - B2_Mm1a SINE B2 0 193 1 5 987 903 167 208 0 chr6 52748718 52748886 -96768151 - B3 SINE B2 -12 204 2 5 987 917 124 7 0 chr6 52749374 52749511 -96767526 + ORR1C1 LTR MaLR 1 138 -240 5 987 626 135 9 9 chr6 52749511 52749623 -96767414 + Lx6 LINE L1 6638 6749 -711 5 987 257 25 0 70 chr6 52749632 52749675 -96767362 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 987 3170 216 20 28 chr6 52749731 52750444 -96766593 + Lx6 LINE L1 6754 7460 0 5 987 3557 15 0 0 chr6 52750642 52751037 -96766000 - L1Md_A LINE L1 0 6582 6188 5 987 186 103 0 0 chr6 52751523 52751552 -96765485 + (TCC)n Simple_repeat Simple_repeat 1 29 0 5 987 210 305 36 54 chr6 52751552 52751663 -96765374 - PB1D10 SINE Alu -8 109 1 5 987 285 285 210 33 chr6 52753805 52754081 -96762956 - L1ME2 LINE L1 -59 6105 5781 5 987 315 267 48 0 chr6 52754097 52754202 -96762835 - L1ME2 LINE L1 -435 5729 5620 5 987 1360 73 56 0 chr6 52754437 52754615 -96762422 - B2_Mm2 SINE B2 -6 189 2 5 987 421 218 232 68 chr6 52754909 52755032 -96762005 - L1ME2 LINE L1 -830 5316 5156 5 987 698 265 110 6 chr6 52755032 52755214 -96761823 + B3 SINE B2 2 202 -14 5 987 197 65 32 0 chr6 52755214 52755245 -96761792 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 5 987 421 218 232 68 chr6 52755245 52755297 -96761740 - L1ME2 LINE L1 -991 5155 5112 5 987 193 260 171 40 chr6 52755712 52755788 -96761249 - MIRb SINE MIR -82 186 101 5 987 749 228 6 41 chr6 52757435 52757604 -96759433 - RSINE1 SINE B4 0 165 3 5 987 22 0 0 0 chr6 52757604 52757626 -96759411 + AT_rich Low_complexity Low_complexity 1 22 0 5 987 497 262 65 8 chr6 52758345 52758468 -96758569 + ID_B1 SINE B4 86 215 -9 5 987 277 271 69 69 chr6 52758361 52758492 -96758545 - YREP_Mm Unknown Unknown -1516 296 166 5 987 544 244 42 66 chr6 52758899 52759066 -96757971 + RSINE1 SINE B4 3 165 0 5 987 627 268 7 0 chr6 52759175 52759313 -96757724 + ID_B1 SINE B4 84 222 -2 5 987 249 401 43 7 chr6 52763970 52764108 -96752929 + MIRm SINE MIR 27 169 -107 5 987 858 129 76 0 chr6 52765045 52765177 -96751860 - B1_Mur4 SINE Alu -8 142 1 5 987 290 290 0 0 chr6 52765413 52765475 -96751562 - PB1D10 SINE Alu -20 97 36 5 987 210 259 144 106 chr6 52765800 52765960 -96751077 - MIR3 SINE MIR -21 187 22 5 987 611 260 141 40 chr6 52766329 52766626 -96750411 + MER63B DNA AcHobo 106 432 -4 5 987 640 265 66 80 chr6 52768143 52768356 -96748681 - B3 SINE B2 -5 211 2 5 987 600 204 0 0 chr6 52768474 52768577 -96748460 - PB1D10 SINE Alu -14 103 1 5 987 624 274 96 10 chr6 52768629 52768828 -96748209 + MIR SINE MIR 7 222 -40 5 987 359 234 272 41 chr6 52769974 52770121 -96746916 + B3A SINE B2 2 182 -16 5 987 224 59 29 0 chr6 52770174 52770208 -96746829 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 987 242 143 20 0 chr6 52770267 52770316 -96746721 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 987 205 200 35 35 chr6 52770545 52770602 -96746435 + GA-rich Low_complexity Low_complexity 5 61 0 5 987 251 309 24 12 chr6 52770666 52770748 -96746289 - ID4 SINE ID 0 83 1 5 987 29 70 0 0 chr6 52770890 52770947 -96746090 + AT_rich Low_complexity Low_complexity 1 57 0 5 987 210 143 0 0 chr6 52771003 52771038 -96745999 + (CGGA)n Simple_repeat Simple_repeat 2 36 0 5 987 367 263 29 65 chr6 52771039 52771232 -96745805 + B3A SINE B2 2 184 -11 5 987 777 179 20 20 chr6 52772209 52772357 -96744680 - B1_Mus1 SINE Alu 0 148 1 5 987 430 313 72 33 chr6 52772820 52773001 -96744036 - B3A SINE B2 0 216 29 5 987 471 254 16 8 chr6 52773226 52773349 -96743688 + MER57-int LTR ERV1 7148 7271 -266 5 987 229 282 45 34 chr6 52774704 52774792 -96742245 - Charlie23a DNA MER1_type -80 259 171 5 987 300 273 133 22 chr6 52775038 52775173 -96741864 - MamRep434 DNA TcMar -276 150 1 5 987 453 225 26 18 chr6 52775764 52775877 -96741160 - B3A SINE B2 -84 114 1 5 987 650 269 53 42 chr6 52775921 52776111 -96740926 - ID_B1 SINE B4 -12 212 21 5 987 571 236 28 21 chr6 52776683 52776826 -96740211 - B4A SINE B4 -148 144 1 5 987 738 275 94 19 chr6 52777201 52777468 -96739569 + B4A SINE B4 1 287 -5 5 987 244 319 0 0 chr6 52777479 52777548 -96739489 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 987 825 273 145 14 chr6 52777722 52778012 -96739025 - Lx8 LINE L1 -7 7466 7139 5 987 1086 230 109 90 chr6 52778034 52778402 -96738635 + MTE2a LTR MaLR 5 379 0 5 987 198 0 0 0 chr6 52778456 52778478 -96738559 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 987 507 260 23 47 chr6 52779672 52779801 -96737236 + ID_B1 SINE B4 88 213 -11 5 987 535 299 119 18 chr6 52781834 52782047 -96734990 + MER82 DNA MER2_type 153 395 -258 5 987 327 104 0 0 chr6 52782047 52782095 -96734942 + (CAAAG)n Simple_repeat Simple_repeat 2 49 0 5 987 535 305 230 21 chr6 52782095 52782311 -96734726 + MER82 DNA MER2_type 396 649 -4 5 987 204 125 0 0 chr6 52783413 52783445 -96733592 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 987 3797 56 7 2 chr6 52783715 52784184 -96732853 - Lx4A LINE L1 -1413 5645 5174 5 987 7574 48 19 4 chr6 52784186 52785106 -96731931 + L1Md_F2 LINE L1 5649 6581 -1 5 987 1242 41 0 0 chr6 52785106 52785253 -96731784 + B1_Mus2 SINE Alu 1 147 0 5 987 624 232 91 27 chr6 52789519 52789705 -96727332 + B3A SINE B2 1 198 0 5 987 432 0 0 0 chr6 52792183 52792231 -96724806 + (TGG)n Simple_repeat Simple_repeat 2 49 0 5 987 210 242 63 16 chr6 52792338 52792401 -96724636 - B4A SINE B4 -220 72 7 5 987 1313 166 18 46 chr6 52792678 52793060 -96723977 - MTC LTR MaLR -14 407 48 5 987 455 173 0 0 chr6 52793724 52793805 -96723232 - MTC LTR MaLR -340 81 1 5 987 225 284 79 49 chr6 52795143 52795277 -96721760 + MIR SINE MIR 33 178 -98 5 987 1068 184 138 19 chr6 52797006 52797266 -96719771 + ORR1D1 LTR MaLR 10 300 -74 5 987 880 174 0 13 chr6 52797588 52797739 -96719298 - B1_Mur4 SINE Alu 0 150 2 5 987 455 340 43 0 chr6 52798270 52798458 -96718579 - MER58A DNA MER1_type -25 199 4 5 987 1335 181 0 0 chr6 52798725 52798935 -96718102 - B3 SINE B2 -6 210 1 5 987 507 73 0 0 chr6 52798936 52799004 -96718033 + (TATG)n Simple_repeat Simple_repeat 2 69 0 5 987 438 294 8 16 chr6 52800370 52800491 -96716546 - RSINE1 SINE B4 -29 136 17 5 987 297 191 43 0 chr6 52800570 52800664 -96716373 + CT-rich Low_complexity Low_complexity 1 98 0 5 987 237 203 172 0 chr6 52800664 52800728 -96716309 - ID SINE ID -143 81 7 5 987 248 240 78 20 chr6 52800889 52800991 -96716046 - MamRep1161 DNA TcMar -828 129 22 5 987 232 196 18 18 chr6 52801789 52801846 -96715191 + CT-rich Low_complexity Low_complexity 4 60 0 5 987 315 0 0 0 chr6 52802245 52802280 -96714757 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 987 414 85 0 0 chr6 52803145 52803204 -96713833 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 5 987 273 119 0 0 chr6 52803566 52803608 -96713429 + (GGA)n Simple_repeat Simple_repeat 2 43 0 5 987 998 266 33 55 chr6 52803631 52804083 -96712954 + L1MB8 LINE L1 5148 5595 -583 5 987 643 247 94 51 chr6 52804061 52804317 -96712720 + L1MB8 LINE L1 5725 5991 -187 5 987 356 280 19 0 chr6 52804372 52804479 -96712558 + B3 SINE B2 90 198 -18 5 987 243 300 0 24 chr6 52805764 52805846 -96711191 + ID4_ SINE ID 1 80 -3 5 987 326 244 0 32 chr6 52806346 52806439 -96710598 + ID_B1 SINE B4 134 223 -1 5 987 594 48 0 46 chr6 52806357 52806444 -96710593 + B1_Mur4 SINE Alu 68 150 0 5 987 281 289 54 66 chr6 52806562 52806729 -96710308 + MIR SINE MIR 93 257 -5 5 987 495 0 0 0 chr6 52807944 52807999 -96709038 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 987 186 328 0 15 chr6 52809455 52809520 -96707517 + MIR SINE MIR 45 108 -100 6 987 271 88 0 0 chr6 52810294 52810341 -96706696 - B1F SINE Alu -10 139 72 6 987 225 65 0 0 chr6 52814536 52814567 -96702470 + (CAAAC)n Simple_repeat Simple_repeat 1 31 0 6 987 306 273 44 35 chr6 52815356 52815470 -96701567 + PB1D10 SINE Alu 1 115 -2 6 987 23 68 0 0 chr6 52817428 52817472 -96699565 + AT_rich Low_complexity Low_complexity 1 44 0 6 987 316 269 115 0 chr6 52817964 52818068 -96698969 + PB1D7 SINE Alu 5 120 0 6 987 252 0 0 0 chr6 52820582 52820610 -96696427 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 6 987 210 143 0 0 chr6 52821132 52821167 -96695870 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 988 210 375 0 12 chr6 52822412 52822493 -96694544 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 988 1225 83 33 0 chr6 52822964 52823145 -96693892 - B2_Mm2 SINE B2 -2 193 7 6 988 410 274 85 0 chr6 52823545 52823698 -96693339 - MIR SINE MIR -73 189 24 6 988 310 149 22 33 chr6 52823774 52823864 -96693173 + (TA)n Simple_repeat Simple_repeat 1 89 0 6 988 4129 43 4 0 chr6 52825274 52825767 -96691270 - L1Md_F2 LINE L1 0 6582 6088 6 988 1479 164 68 143 chr6 52827768 52828181 -96688856 + ORR1C2 LTR MaLR 1 382 -2 6 988 3884 227 66 60 chr6 52828199 52829349 -96687688 + ORR1C2-int LTR MaLR 169 1325 -45 6 988 1863 185 36 49 chr6 52829367 52829754 -96687283 + ORR1C2 LTR MaLR 1 382 -2 6 988 2006 175 12 30 chr6 52829817 52830136 -96686901 - ORR1B1 LTR MaLR 0 394 82 6 988 3388 38 2 0 chr6 52830136 52830531 -96686506 - MTA_Mm LTR MaLR 0 396 1 6 988 2006 175 12 30 chr6 52830531 52830612 -96686425 - ORR1B1 LTR MaLR -313 81 1 6 988 480 90 0 0 chr6 52830744 52830811 -96686226 + B1_Mus1 SINE Alu 2 68 -80 6 988 577 125 0 0 chr6 52830804 52830892 -96686145 - ORR1D1 LTR MaLR -284 90 3 6 988 288 111 0 0 chr6 52830916 52830961 -96686076 - MTE2a LTR MaLR -330 49 5 6 988 299 292 54 81 chr6 52830948 52830969 -96686068 + ID_B1 SINE B4 79 223 -1 6 988 619 203 62 0 chr6 52830969 52831097 -96685940 + B1_Mur1 SINE Alu 13 148 -1 6 988 369 353 7 22 chr6 52831147 52831283 -96685754 + RSINE1 SINE B4 4 137 -28 6 988 386 269 76 49 chr6 52831370 52831586 -96685451 + L1MA4 LINE L1 5755 5988 -312 6 988 219 36 0 0 chr6 52831586 52831614 -96685423 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 988 386 266 66 57 chr6 52831614 52831641 -96685396 + L1MA4 LINE L1 5989 6011 -289 6 988 695 302 35 23 chr6 52832093 52832351 -96684686 + Lx9 LINE L1 6839 7099 -545 6 988 508 308 60 44 chr6 52833872 52834120 -96682917 + B4 SINE B4 32 283 -9 6 988 443 256 86 17 chr6 52834398 52834573 -96682464 + Charlie4a DNA MER1_type 308 494 -14 6 988 252 0 0 0 chr6 52835509 52835537 -96681500 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 988 2174 126 12 6 chr6 52836083 52836410 -96680627 - ORR1A4 LTR MaLR 0 329 1 6 988 1755 44 9 22 chr6 52837203 52837435 -96679602 + L1Md_F2 LINE L1 6354 6582 0 6 988 1016 234 163 28 chr6 52839067 52839392 -96677645 + ORR1D2 LTR MaLR 1 369 -1 6 988 304 283 27 116 chr6 52840585 52840697 -96676340 - PB1D10 SINE Alu -10 107 6 6 988 976 159 0 0 chr6 52841146 52841291 -96675746 + B1_Mur2 SINE Alu 1 145 -4 6 988 311 82 40 14 chr6 52841844 52841918 -96675119 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 988 824 233 157 8 chr6 52841935 52842177 -96674860 - B4 SINE B4 -12 280 3 6 988 241 307 7 162 chr6 52842223 52842359 -96674678 + PB1D10 SINE Alu 2 116 -1 6 988 200 195 0 0 chr6 52842492 52842533 -96674504 + CT-rich Low_complexity Low_complexity 2 42 0 6 988 287 306 28 0 chr6 52846132 52846240 -96670797 + ORR1E LTR MaLR 24 134 -225 6 988 330 55 0 0 chr6 52848047 52848102 -96668935 + L1Md_F2 LINE L1 6528 6582 0 6 988 601 236 14 35 chr6 52848293 52848438 -96668599 - ID_B1 SINE B4 -6 218 77 6 988 360 158 0 0 chr6 52850121 52850197 -96666840 + T-rich Low_complexity Low_complexity 1 76 0 6 988 1078 58 65 0 chr6 52850200 52850339 -96666698 - B1_Mus1 SINE Alu 0 148 1 6 988 834 274 62 0 chr6 52851844 52852070 -96664967 + B4 SINE B4 2 241 -51 6 988 330 26 0 0 chr6 52852133 52852172 -96664865 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 988 416 172 48 72 chr6 52854790 52854915 -96662122 + RMER30 DNA MER1_type 26 147 -55 6 988 393 241 91 41 chr6 52855289 52855410 -96661627 + RSINE1 SINE B4 11 137 -28 6 988 186 43 0 0 chr6 52855430 52855453 -96661584 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 6 988 245 71 71 0 chr6 52855459 52855501 -96661536 + (GGGAGA)n Simple_repeat Simple_repeat 3 47 0 6 988 332 154 51 13 chr6 52855504 52855583 -96661454 + (CAGA)n Simple_repeat Simple_repeat 3 84 0 6 988 300 200 0 0 chr6 52855594 52855689 -96661348 + (CA)n Simple_repeat Simple_repeat 2 96 0 6 988 552 143 0 0 chr6 52855750 52855862 -96661175 + (CA)n Simple_repeat Simple_repeat 2 113 0 6 988 688 305 23 60 chr6 52856025 52856325 -96660712 - B4A SINE B4 -2 290 2 6 988 23 0 0 0 chr6 52857153 52857176 -96659861 + AT_rich Low_complexity Low_complexity 1 23 0 6 988 453 284 8 0 chr6 52857783 52857910 -96659127 - ID_B1 SINE B4 0 224 97 6 988 277 307 90 47 chr6 52859502 52859714 -96657323 + LTR33 LTR ERVL 105 325 -190 6 988 24 53 0 0 chr6 52860736 52860774 -96656263 + AT_rich Low_complexity Low_complexity 1 38 0 6 988 558 295 180 5 chr6 52860799 52861010 -96656027 - B4 SINE B4 -43 249 2 6 988 324 143 0 0 chr6 52862085 52862141 -96654896 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 988 243 0 0 0 chr6 52864115 52864142 -96652895 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 988 307 226 278 17 chr6 52864230 52864410 -96652627 + L1MC3 LINE L1 7559 7785 0 6 988 258 217 0 0 chr6 52864563 52864632 -96652405 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 988 347 243 9 28 chr6 52865104 52865210 -96651827 + ID_B1 SINE B4 86 189 -35 6 988 285 275 33 11 chr6 52865799 52865891 -96651146 - L2a LINE L2 -6 3420 3327 6 988 310 200 73 73 chr6 52866663 52866787 -96650250 + MLT1A1 LTR MaLR 273 396 -12 6 988 389 292 108 0 chr6 52868352 52868472 -96648565 - B1F SINE Alu -3 146 14 6 988 2152 39 0 0 chr6 52871601 52871855 -96645182 + L1_Mus1 LINE L1 6314 6567 0 6 988 417 86 0 0 chr6 52871861 52871919 -96645118 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 6 988 182 175 25 0 chr6 52872466 52872506 -96644531 - MIR SINE MIR -117 145 105 6 988 471 279 90 13 chr6 52873315 52873471 -96643566 + B3A SINE B2 1 168 -30 6 988 722 262 50 14 chr6 52873490 52873683 -96643354 + B3 SINE B2 3 195 0 6 988 272 244 23 47 chr6 52873710 52873796 -96643241 + Tigger5 DNA MER2_type 20 103 -2303 6 988 3698 65 12 10 chr6 52874164 52874650 -96642387 + L1Md_F2 LINE L1 6096 6582 0 6 988 231 297 122 0 chr6 52874704 52874778 -96642259 - MER94 DNA AcHobo 0 134 52 6 988 1642 192 37 6 chr6 52876947 52877298 -96639739 - ORR1D1 LTR MaLR -1 373 12 6 988 451 122 10 20 chr6 52877423 52877523 -96639514 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 6 988 530 292 31 0 chr6 52877526 52877656 -96639381 - B1_Mur1 SINE Alu -14 135 2 6 988 194 91 30 0 chr6 52877968 52878001 -96639036 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 6 988 245 278 14 101 chr6 52878001 52878149 -96638888 - L2a LINE L2 -13 3413 3279 6 988 385 148 0 0 chr6 52879047 52879108 -96637929 - B1_Mur4 SINE Alu -89 61 1 6 988 706 176 69 0 chr6 52880702 52880833 -96636204 - B1_Mur4 SINE Alu -6 144 5 6 988 461 264 25 0 chr6 52881254 52881375 -96635662 - B1_Mur2 SINE Alu -13 136 13 6 988 424 225 84 15 chr6 52881689 52881820 -96635217 + B4A SINE B4 1 140 -152 6 988 614 238 18 96 chr6 52882070 52882292 -96634745 + B4A SINE B4 90 292 0 6 988 23 33 0 0 chr6 52883193 52883223 -96633814 + AT_rich Low_complexity Low_complexity 1 30 0 6 988 673 280 22 6 chr6 52884750 52884933 -96632104 + B3 SINE B2 6 191 -25 6 988 451 261 22 7 chr6 52885562 52885697 -96631340 + B1F1 SINE Alu 1 137 -12 6 988 247 328 0 0 chr6 52885720 52885781 -96631256 + tRNA-Ala-GCY_ tRNA tRNA 6 66 -9 6 988 246 361 0 0 chr6 52885781 52885792 -96631245 + ID4 SINE ID 12 83 0 6 988 318 288 0 0 chr6 52886828 52886901 -96630136 - ID4 SINE ID -10 73 1 6 988 21 36 0 0 chr6 52887378 52887406 -96629631 + AT_rich Low_complexity Low_complexity 1 28 0 6 988 1030 50 14 0 chr6 52888524 52888664 -96628373 - B1_Mus1 SINE Alu 0 148 7 6 988 261 0 0 0 chr6 52889120 52889149 -96627888 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 988 930 57 0 0 chr6 52889198 52889322 -96627715 - B1_Mus1 SINE Alu 0 148 25 6 988 2218 123 110 7 chr6 52889310 52889729 -96627308 - RMER19B LTR ERVK -5 897 436 6 988 764 304 85 18 chr6 52889734 52890123 -96626914 + L1MB5 LINE L1 5611 6025 -149 6 988 321 47 0 0 chr6 52891625 52891668 -96625369 + (CAG)n Simple_repeat Simple_repeat 1 43 0 6 988 541 271 151 39 chr6 52893377 52893595 -96623442 - L1MA4 LINE L1 -268 6032 5789 6 988 207 69 0 0 chr6 52893595 52893624 -96623413 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 988 541 258 154 39 chr6 52893624 52893756 -96623281 - L1MA4 LINE L1 -512 5788 5645 6 988 425 248 48 24 chr6 52893996 52894120 -96622917 + MLT1A1 LTR MaLR 268 394 -14 6 988 432 139 0 12 chr6 52897368 52897448 -96619589 + B2_Mm2 SINE B2 115 193 -2 6 988 326 183 0 12 chr6 52897458 52897541 -96619496 + B2_Mm2 SINE B2 114 195 0 6 988 294 274 125 34 chr6 52898417 52898625 -96618412 - B4 SINE B4 -63 229 3 7 988 891 289 102 65 chr6 52899093 52899771 -96617266 - L1MB1 LINE L1 -143 6037 5329 7 988 246 279 43 14 chr6 52903305 52903374 -96613663 - PB1D7 SINE Alu -47 73 3 7 988 207 0 0 0 chr6 52904258 52904281 -96612756 + (CAT)n Simple_repeat Simple_repeat 2 24 0 7 988 699 293 35 22 chr6 52904981 52905211 -96611826 + B4A SINE B4 49 281 -11 7 988 597 222 176 51 chr6 52905657 52905913 -96611124 + B4 SINE B4 5 292 0 7 988 233 321 41 58 chr6 52906218 52906390 -96610647 - L1MEd LINE L1 -5363 756 588 7 988 245 185 0 15 chr6 52906509 52906575 -96610462 + CT-rich Low_complexity Low_complexity 1 65 0 7 988 380 259 88 15 chr6 52907776 52907913 -96609124 + LTR41B LTR ERVL 3 149 -609 7 988 491 338 33 5 chr6 52908099 52908310 -96608727 + LTR41B LTR ERVL 413 629 -129 7 988 22 0 0 0 chr6 52909187 52909209 -96607828 + AT_rich Low_complexity Low_complexity 1 22 0 7 988 269 275 42 42 chr6 52913333 52913428 -96603609 + L2c LINE L2 3274 3368 -19 7 988 23 33 0 0 chr6 52913896 52913926 -96603111 + AT_rich Low_complexity Low_complexity 1 30 0 7 988 30 0 0 0 chr6 52915082 52915112 -96601925 + AT_rich Low_complexity Low_complexity 1 30 0 7 988 21 36 0 0 chr6 52915141 52915169 -96601868 + AT_rich Low_complexity Low_complexity 1 28 0 7 988 230 272 58 50 chr6 52917291 52917411 -96599626 - L1M5 LINE L1 -289 5835 5715 7 988 283 175 12 48 chr6 52919519 52919603 -96597434 + A-rich Low_complexity Low_complexity 4 84 0 7 988 180 111 0 0 chr6 52920553 52920580 -96596457 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 7 988 219 217 43 0 chr6 52923533 52923602 -96593435 + B1F1 SINE Alu 40 108 -9 7 988 427 235 67 8 chr6 52924327 52924447 -96592590 - PB1 SINE Alu 0 127 1 7 988 8193 49 2 9 chr6 52926520 52927713 -96589324 - L1_Mus1 LINE L1 0 6567 5384 7 988 985 135 0 0 chr6 52927782 52927938 -96589099 + B2_Mm2 SINE B2 6 161 -34 7 988 282 56 0 0 chr6 52927941 52927977 -96589060 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 7 988 1201 55 0 7 chr6 52928231 52928378 -96588659 - B1_Mus2 SINE Alu -1 146 1 7 988 213 39 0 0 chr6 52928447 52928473 -96588564 + (TGG)n Simple_repeat Simple_repeat 3 28 0 7 988 264 209 154 0 chr6 52929978 52930069 -96586968 + MLT-int LTR MaLR 15 119 -1616 7 988 180 0 0 0 chr6 52931634 52931654 -96585383 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 7 988 1165 64 6 0 chr6 52931654 52931811 -96585226 - B2_Mm1t SINE B2 -33 160 3 7 988 330 225 132 14 chr6 52932092 52932236 -96584801 + RMER4A LTR ERVK 9 169 -297 7 988 520 273 98 5 chr6 52932525 52932709 -96584328 - B3 SINE B2 -14 202 2 7 988 15133 67 14 4 chr6 52934565 52937197 -96579840 + L1VL2 LINE L1 332 2989 -626 7 988 243 0 0 0 chr6 52937275 52937302 -96579735 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 7 988 187 310 43 65 chr6 52938725 52938818 -96578219 - MIRc SINE MIR -150 118 28 7 988 211 352 68 0 chr6 52939855 52939943 -96577094 + MIR SINE MIR 147 240 -22 7 988 289 289 57 24 chr6 52939984 52940108 -96576929 + L2 LINE L2 2682 2809 -610 7 988 182 289 48 12 chr6 52941060 52941144 -96575893 - MIRb SINE MIR -8 260 174 7 988 225 0 0 0 chr6 52941824 52941849 -96575188 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 7 988 204 219 0 0 chr6 52942773 52942814 -96574223 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 988 215 61 0 29 chr6 52943358 52943392 -96573645 + (AGTAG)n Simple_repeat Simple_repeat 1 33 0 7 988 392 137 0 27 chr6 52943512 52943587 -96573450 + GA-rich Low_complexity Low_complexity 4 76 0 7 988 33 43 0 0 chr6 52943679 52943726 -96573311 + AT_rich Low_complexity Low_complexity 1 47 0 7 988 240 350 30 0 chr6 52944252 52944352 -96572685 + MIRb SINE MIR 135 237 -31 7 988 24 32 0 0 chr6 52944648 52944679 -96572358 + AT_rich Low_complexity Low_complexity 1 31 0 7 988 231 297 31 0 chr6 52944949 52945013 -96572024 + (CATG)n Simple_repeat Simple_repeat 1 66 0 7 988 1075 157 91 0 chr6 52945105 52945303 -96571734 + Lx6 LINE L1 4496 4711 -1169 7 988 6862 199 67 6 chr6 52945309 52947426 -96569611 + Lx6 LINE L1 4884 7160 -300 7 988 22 56 0 0 chr6 52947610 52947646 -96569391 + AT_rich Low_complexity Low_complexity 1 36 0 7 988 345 270 0 0 chr6 52948507 52948596 -96568441 + PB1D10 SINE Alu 27 115 -2 7 988 6699 84 32 7 chr6 52948740 52950453 -96566584 - L1VL2 LINE L1 -1789 1826 75 7 988 584 258 56 70 chr6 52951927 52952159 -96564878 + L1M2 LINE L1 5509 5734 -578 7 988 481 272 37 0 chr6 52952257 52952393 -96564644 + L1M2 LINE L1 4050 4190 -1953 7 988 524 293 103 6 chr6 52952513 52952678 -96564359 + B3 SINE B2 25 205 -11 7 989 239 266 62 0 chr6 52953440 52953504 -96563533 - ID4_ SINE ID -14 69 2 7 989 261 317 12 0 chr6 52956687 52956769 -96560268 + ID4_ SINE ID 1 83 0 7 989 561 222 195 15 chr6 52957150 52957411 -96559626 - MER33 DNA MER1_type -16 308 1 7 989 255 288 14 0 chr6 52957814 52957887 -96559150 - B2_Mm2 SINE B2 -120 75 2 7 989 1483 249 190 16 chr6 52957916 52958421 -96558616 + Lx8 LINE L1 6262 6854 -619 7 989 1320 260 64 55 chr6 52958449 52958884 -96558153 + Lx8 LINE L1 7028 7466 -7 7 989 586 326 34 36 chr6 52959069 52959425 -96557612 - L1MC4a LINE L1 -1919 5963 5609 7 989 279 0 0 0 chr6 52959752 52959783 -96557254 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 7 989 308 297 86 14 chr6 52962772 52962912 -96554125 + MLT1B LTR MaLR 1 150 -240 7 989 7472 76 14 2 chr6 52963187 52964163 -96552874 + L1_Mus4 LINE L1 5649 6636 0 7 989 248 320 27 0 chr6 52965743 52965818 -96551219 - L2a LINE L2 0 3426 3350 7 989 1340 161 5 0 chr6 52966955 52967178 -96549859 - URR1A DNA MER1_type 0 226 3 7 989 474 281 25 25 chr6 52967211 52967368 -96549669 + MER5A DNA MER1_type 6 162 -27 7 989 225 280 95 36 chr6 52971563 52971700 -96545337 + L2a LINE L2 3016 3160 -266 7 989 468 0 0 0 chr6 52971742 52971794 -96545243 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 7 989 252 22 43 22 chr6 52972035 52972081 -96544956 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 7 989 560 231 8 0 chr6 52972372 52972493 -96544544 - B1_Mur4 SINE Alu -11 139 18 7 989 21 36 0 0 chr6 52972512 52972540 -96544497 + AT_rich Low_complexity Low_complexity 1 28 0 7 989 994 22 21 28 chr6 52972670 52972812 -96544225 + B2_Mm1a SINE B2 53 193 0 7 989 197 301 85 17 chr6 52974380 52974529 -96542508 - MIRc SINE MIR -78 190 31 7 989 434 205 0 0 chr6 52974825 52974903 -96542134 - ID4_ SINE ID -4 79 2 7 989 302 231 21 52 chr6 52977602 52977698 -96539339 + MLT1C LTR MaLR 137 229 -238 7 989 274 317 20 10 chr6 52977791 52977893 -96539144 + MLT1C LTR MaLR 359 461 -6 7 989 907 199 102 5 chr6 52979543 52979730 -96537307 + B3 SINE B2 3 207 -9 7 989 36 23 0 0 chr6 52979732 52979775 -96537262 + AT_rich Low_complexity Low_complexity 1 43 0 7 989 225 0 0 0 chr6 52979817 52979842 -96537195 + (CCTAT)n Simple_repeat Simple_repeat 2 26 0 7 989 317 239 14 0 chr6 52980407 52980478 -96536559 + B3A SINE B2 86 157 -41 7 989 387 41 0 0 chr6 52980479 52980528 -96536509 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 989 23 0 0 0 chr6 52981051 52981074 -96535963 + AT_rich Low_complexity Low_complexity 1 23 0 7 989 469 204 0 0 chr6 52982847 52982940 -96534097 - B3 SINE B2 -5 211 119 7 989 261 0 0 0 chr6 52985165 52985194 -96531843 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 989 285 29 0 0 chr6 52986808 52986842 -96530195 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 7 989 290 239 0 42 chr6 52987685 52987781 -96529256 + (CATA)n Simple_repeat Simple_repeat 2 93 0 7 989 396 244 0 0 chr6 52987801 52987928 -96529109 + (CA)n Simple_repeat Simple_repeat 2 128 0 7 989 979 265 75 27 chr6 52988398 52988770 -96528267 + MTD LTR MaLR 17 406 -13 7 989 1199 48 7 0 chr6 52991099 52991245 -96525792 - B1_Mus2 SINE Alu 0 147 1 7 989 485 309 143 17 chr6 52991536 52991836 -96525201 - MER58B DNA MER1_type 0 341 4 7 989 303 276 40 10 chr6 52992853 52992952 -96524085 + L1MC3 LINE L1 7684 7785 0 7 989 403 283 8 55 chr6 52993293 52993420 -96523617 + B4A SINE B4 2 122 -170 7 989 218 100 0 0 chr6 52993519 52993549 -96523488 + B1_Mus2 SINE Alu 1 30 -117 7 989 1701 100 19 8 chr6 52993523 52993786 -96523251 + MT2C_Mm LTR ERVL 210 475 0 7 989 186 191 0 0 chr6 52993813 52993860 -96523177 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 989 274 307 53 30 chr6 52994230 52994361 -96522676 + MER106B DNA MER1_type 921 1054 -5 7 989 198 0 0 0 chr6 52994484 52994506 -96522531 + (T)n Simple_repeat Simple_repeat 1 22 0 7 989 1031 209 30 0 chr6 52996617 52996818 -96520219 + B3 SINE B2 3 209 -7 7 989 346 208 191 48 chr6 52997212 52997338 -96519699 + ID_B1 SINE B4 81 224 0 7 989 675 117 0 0 chr6 52997475 52997578 -96519459 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 989 242 139 0 0 chr6 52997578 52997614 -96519423 - L1_Rod LINE L1 -140 5707 5672 7 989 523 220 68 0 chr6 52997614 52997746 -96519291 + Lx5 LINE L1 5783 5923 -1127 7 989 3067 287 72 68 chr6 52997758 52999158 -96517879 + Lx9 LINE L1 6030 7580 -64 7 989 200 261 42 28 chr6 52999307 52999378 -96517659 + MIR SINE MIR 110 181 -81 7 989 1335 77 0 0 chr6 52999389 52999811 -96517226 + (CTGTG)n Simple_repeat Simple_repeat 1 422 0 7 989 459 345 0 0 chr6 53000616 53000761 -96516276 - ID_B1 SINE B4 0 224 80 1 989 780 154 197 0 chr6 53002134 53002322 -96514715 + URR1B DNA MER1_type 1 225 0 2 989 25 0 0 0 chr6 53002859 53002884 -96514153 + AT_rich Low_complexity Low_complexity 1 25 0 3 989 299 242 71 0 chr6 53003851 53003950 -96513087 + L2a LINE L2 3316 3421 -5 4 989 254 300 125 27 chr6 53004915 53005069 -96511968 - MIRb SINE MIR -7 255 76 5 989 280 288 0 0 chr6 53005521 53005587 -96511450 + PB1 SINE Alu 1 66 -61 6 989 37 0 0 0 chr6 53006086 53006123 -96510914 + AT_rich Low_complexity Low_complexity 1 37 0 7 989 828 263 133 31 chr6 53006714 53007232 -96509805 - Arthur1 DNA Tip100 -9 3938 3368 8 989 355 227 192 34 chr6 53007310 53007456 -96509581 - Arthur1 DNA Tip100 -3259 688 520 8 989 250 365 61 20 chr6 53007541 53007737 -96509300 - Arthur1 DNA Tip100 -3546 401 198 8 989 222 118 0 0 chr6 53007903 53007937 -96509100 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 989 261 256 11 34 chr6 53008198 53008287 -96508750 + (CATATA)n Simple_repeat Simple_repeat 2 88 0 1 989 401 346 53 11 chr6 53008312 53008502 -96508535 + MER44C DNA MER2_type 2 199 -534 1 989 425 278 147 34 chr6 53008524 53008841 -96508196 + MER44C DNA MER2_type 290 642 -91 1 989 1091 161 93 0 chr6 53009168 53009373 -96507664 - URR1B DNA MER1_type 0 225 2 1 989 501 97 0 0 chr6 53009439 53009511 -96507526 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 989 225 0 0 0 chr6 53009511 53009536 -96507501 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1 989 300 232 11 22 chr6 53009752 53009933 -96507104 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 989 420 254 82 0 chr6 53009957 53010042 -96506995 - RSINE1 SINE B4 -20 145 52 1 989 370 269 86 9 chr6 53010042 53010158 -96506879 + B1_Mur2 SINE Alu 3 127 -22 1 989 225 348 0 14 chr6 53010170 53010240 -96506797 - RSINE1 SINE B4 -95 70 2 1 989 614 269 121 43 chr6 53012075 53012355 -96504682 - ORR1E LTR MaLR -25 334 33 1 989 211 259 0 17 chr6 53012536 53012595 -96504442 + B3 SINE B2 1 58 -158 2 989 261 0 0 0 chr6 53012672 53012701 -96504336 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 989 4319 251 98 41 chr6 53012730 53014084 -96502953 - ORR1E-int LTR MaLR -141 1439 9 2 989 847 297 97 18 chr6 53014100 53014429 -96502608 - ORR1E LTR MaLR -4 355 1 2 989 465 280 0 0 chr6 53015872 53016040 -96500997 + (TA)n Simple_repeat Simple_repeat 2 169 0 2 989 228 35 0 0 chr6 53016313 53016342 -96500695 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2 989 43 94 0 0 chr6 53017874 53018001 -96499036 + GC_rich Low_complexity Low_complexity 1 127 0 2 989 295 167 59 29 chr6 53018045 53018181 -96498856 + (CCGCG)n Simple_repeat Simple_repeat 3 142 0 2 989 232 217 56 28 chr6 53018296 53018438 -96498599 + (CCCG)n Simple_repeat Simple_repeat 1 146 0 2 989 321 283 26 19 chr6 53018604 53018759 -96498278 + G-rich Low_complexity Low_complexity 6 161 0 2 989 22 0 0 0 chr6 53019120 53019142 -96497895 + AT_rich Low_complexity Low_complexity 1 22 0 2 989 243 0 0 0 chr6 53021238 53021265 -96495772 + (T)n Simple_repeat Simple_repeat 1 27 0 3 989 215 167 0 40 chr6 53023135 53023185 -96493852 + C-rich Low_complexity Low_complexity 1 48 0 3 989 1052 255 11 13 chr6 53023531 53023882 -96493155 - L1MA4 LINE L1 -275 6022 5672 3 989 572 303 44 19 chr6 53023929 53024087 -96492950 - RSINE1 SINE B4 -2 163 2 3 989 22 35 0 0 chr6 53024120 53024149 -96492888 + AT_rich Low_complexity Low_complexity 1 29 0 3 989 957 209 255 19 chr6 53024328 53024650 -96492387 + MTD LTR MaLR 8 405 -14 3 989 291 333 117 33 chr6 53025674 53025854 -96491183 + ORR1E LTR MaLR 1 195 -164 3 989 235 221 72 14 chr6 53025970 53026039 -96490998 + ORR1E LTR MaLR 298 370 0 3 989 667 258 58 93 chr6 53026697 53027061 -96489976 - ORR1E LTR MaLR 0 359 9 3 989 378 0 0 0 chr6 53027090 53027132 -96489905 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 989 1250 154 14 9 chr6 53027456 53027679 -96489358 + URR1B DNA MER1_type 2 225 0 3 989 248 308 125 0 chr6 53028294 53028398 -96488639 + MIRb SINE MIR 51 167 -101 4 989 570 245 143 96 chr6 53029777 53030120 -96486917 + ORR1E LTR MaLR 1 359 0 4 989 330 162 0 0 chr6 53030148 53030222 -96486815 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 989 762 268 58 83 chr6 53030325 53030699 -96486338 - RLTR18 LTR ERVK 0 616 111 4 989 446 269 102 41 chr6 53030855 53031002 -96486035 - RLTR18 LTR ERVK -356 156 1 4 989 275 317 19 29 chr6 53031561 53031665 -96485372 + MLT1J LTR MaLR 110 212 -300 4 989 271 324 60 43 chr6 53031786 53031902 -96485135 + MLT1J LTR MaLR 376 493 -19 4 989 555 29 0 0 chr6 53032865 53032934 -96484103 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 989 616 234 16 0 chr6 53032934 53033058 -96483979 - B3A SINE B2 -50 148 23 4 989 1086 94 0 43 chr6 53033751 53034316 -96482721 + (TTAGGG)n Simple_repeat Simple_repeat 1 540 0 4 989 1040 74 3 42 chr6 53034346 53034975 -96482062 + (TTAGGG)n Simple_repeat Simple_repeat 1 604 0 4 989 424 171 16 105 chr6 53035813 53035937 -96481100 - MLT1D LTR MaLR -3 502 390 4 989 1051 221 158 27 chr6 53036071 53036209 -96480828 + MTEa LTR MaLR 1 148 -231 4 989 273 119 0 0 chr6 53036209 53036251 -96480786 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 989 1051 221 158 27 chr6 53036251 53036447 -96480590 + MTEa LTR MaLR 149 379 0 4 989 409 276 70 32 chr6 53036667 53036824 -96480213 + MIR SINE MIR 23 185 -77 5 989 232 318 0 74 chr6 53037807 53037902 -96479135 + Arthur1A DNA Tip100 3 90 -87 5 989 3135 144 61 80 chr6 53038003 53038630 -96478407 - RLTR18 LTR ERVK 0 616 2 5 989 404 300 58 58 chr6 53039018 53039209 -96477828 - MER20 DNA MER1_type -6 213 23 5 989 1752 147 6 70 chr6 53039336 53039679 -96477358 - ORR1A4 LTR MaLR -8 321 1 5 989 473 201 132 69 chr6 53039712 53039856 -96477181 + L1M4 LINE L1 4206 4358 -1788 5 989 379 222 89 14 chr6 53039946 53040092 -96476945 + L1M4 LINE L1 4347 4503 -1643 5 989 243 133 44 0 chr6 53040138 53040183 -96476854 + Lx7 LINE L1 7567 7613 -83 5 989 3591 23 0 0 chr6 53040275 53040671 -96476366 - MTA_Mm LTR MaLR 0 396 1 5 989 342 216 34 8 chr6 53040791 53040908 -96476129 - Lx9 LINE L1 -2 7642 7523 5 989 307 255 67 24 chr6 53040906 53041118 -96475919 - Lx6 LINE L1 -20 7676 7335 6 989 315 297 20 68 chr6 53041479 53041627 -96475410 + MIR SINE MIR 14 154 -108 6 989 351 266 13 0 chr6 53041634 53041713 -96475324 + MTE2b LTR MaLR 1 80 -299 6 989 407 328 0 8 chr6 53042031 53042148 -96474889 + PB1D10 SINE Alu 1 116 -1 6 989 1676 181 40 8 chr6 53042378 53042729 -96474308 - MTD LTR MaLR -51 368 7 6 989 1359 290 129 43 chr6 53042741 53043697 -96473340 - L1MC4 LINE L1 -307 7735 6698 6 989 302 241 143 25 chr6 53043722 53043841 -96473196 - L1MC4 LINE L1 -1302 6580 6448 6 989 22 0 0 0 chr6 53044054 53044076 -96472961 + AT_rich Low_complexity Low_complexity 1 22 0 6 989 200 338 84 28 chr6 53044713 53044856 -96472181 - MER5B DNA MER1_type 0 178 28 6 989 200 296 46 95 chr6 53044988 53045171 -96471866 + L2c LINE L2 3181 3383 -4 6 989 372 43 0 0 chr6 53046769 53046815 -96470222 + (TCTG)n Simple_repeat Simple_repeat 3 48 0 6 989 309 151 0 0 chr6 53046843 53046896 -96470141 + GA-rich Low_complexity Low_complexity 2 54 0 7 989 555 299 39 10 chr6 53047169 53047375 -96469662 - B4A SINE B4 -63 229 18 7 989 293 222 63 196 chr6 53047698 53047808 -96469229 - Lx9 LINE L1 -2 7642 7554 7 989 468 0 0 0 chr6 53047808 53047860 -96469177 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 989 293 222 63 196 chr6 53047860 53048035 -96469002 - Lx9 LINE L1 -91 7553 7395 7 989 38 22 0 0 chr6 53048080 53048125 -96468912 + AT_rich Low_complexity Low_complexity 1 45 0 7 989 454 347 76 10 chr6 53048392 53048533 -96468504 - L1MB7 LINE L1 -60 6124 5967 7 989 339 25 0 0 chr6 53048533 53048573 -96468464 + (CTAA)n Simple_repeat Simple_repeat 4 43 0 7 989 454 347 76 10 chr6 53048573 53048719 -96468318 - L1MB7 LINE L1 -218 5966 5818 7 989 272 378 0 0 chr6 53049361 53049459 -96467578 + ID_B1 SINE B4 80 177 -47 7 989 360 0 0 0 chr6 53049504 53049544 -96467493 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 989 682 122 36 0 chr6 53049545 53049684 -96467353 + GA-rich Low_complexity Low_complexity 1 144 0 7 989 41789 10 1 6 chr6 53050517 53056921 -96460116 - L1Md_A LINE L1 0 6582 215 8 989 833 191 190 33 chr6 53057051 53057235 -96459802 + B3 SINE B2 2 214 -2 8 989 373 318 19 9 chr6 53057332 53057440 -96459597 - MLT1J LTR MaLR -264 248 140 8 989 666 228 9 9 chr6 53057491 53057662 -96459375 - MTE2b LTR MaLR 0 379 208 8 989 309 105 18 0 chr6 53057666 53057723 -96459314 + RMER4A LTR ERVK 409 466 0 8 989 252 128 26 0 chr6 53057723 53057762 -96459275 + MurERV4-int LTR ERVK 1 40 -5220 8 989 937 164 60 0 chr6 53057764 53057947 -96459090 + RMER4A LTR ERVK 238 431 -35 8 989 5964 161 21 16 chr6 53057947 53058969 -96458068 + MurERV4-int LTR ERVK 49 1076 -4184 8 989 415 145 17 81 chr6 53058983 53059156 -96457881 + RMER17D2 LTR ERVK 342 503 -306 8 989 3914 130 10 22 chr6 53059177 53059773 -96457264 + MurERV4-int LTR ERVK 1094 1682 -3578 8 989 1762 140 40 10 chr6 53059841 53060137 -96456900 + MurERV4-int LTR ERVK 4956 5260 0 8 989 1657 138 72 158 chr6 53060138 53060595 -96456442 + RMER4A LTR ERVK 5 422 -44 8 989 352 295 42 0 chr6 53060616 53060711 -96456326 + Lx8 LINE L1 7208 7306 -167 8 989 462 49 0 0 chr6 53060721 53060782 -96456255 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 989 668 243 0 7 chr6 53060939 53061080 -96455957 + B1_Mur2 SINE Alu 2 141 -8 8 989 334 266 72 18 chr6 53061228 53061339 -96455698 - PB1D10 SINE Alu 0 117 1 9 989 186 229 110 41 chr6 53061394 53061467 -96455570 + L2 LINE L2 1945 2022 -1397 9 989 317 288 12 12 chr6 53062057 53062138 -96454899 + PB1D10 SINE Alu 22 102 -15 9 989 426 197 8 17 chr6 53062138 53062192 -96454845 + polypurine Low_complexity Low_complexity 4 57 0 9 989 3869 53 58 12 chr6 53062192 53062688 -96454349 - MURVY-LTR LTR ERV1 0 519 1 9 989 426 197 8 17 chr6 53062688 53062752 -96454285 + polypurine Low_complexity Low_complexity 58 121 0 9 989 441 320 102 20 chr6 53063183 53063486 -96453551 + L2 LINE L2 2480 2807 -612 9 989 595 210 17 0 chr6 53063764 53063883 -96453154 + Lx8 LINE L1 7205 7325 -148 9 989 283 200 69 81 chr6 53063883 53063970 -96453067 + RLTR25B LTR ERVK 424 509 -519 9 989 864 27 0 0 chr6 53063902 53064013 -96453024 + B1_Mm SINE Alu 37 147 0 9 989 21 0 0 0 chr6 53064013 53064034 -96453003 + AT_rich Low_complexity Low_complexity 1 21 0 9 989 333 0 0 0 chr6 53064807 53064844 -96452193 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 989 1128 103 12 2 chr6 53064948 53065131 -96451906 - ORR1A2 LTR MaLR -51 327 114 1 989 614 259 109 68 chr6 53065110 53065330 -96451707 - B4A SINE B4 -62 230 2 1 989 465 272 154 93 chr6 53067118 53067462 -96449575 + MLT1A0 LTR MaLR 1 365 0 1 989 527 285 127 59 chr6 53068454 53068793 -96448244 + L1ME2 LINE L1 5791 6152 -12 1 989 760 247 22 6 chr6 53070533 53070712 -96446325 - B3A SINE B2 -16 182 1 1 989 30 97 0 0 chr6 53070732 53070825 -96446212 + AT_rich Low_complexity Low_complexity 1 93 0 1 989 195 42 0 0 chr6 53071223 53071247 -96445790 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 989 3258 46 8 2 chr6 53071429 53071823 -96445214 + MTA_Mm LTR MaLR 1 396 0 1 989 9203 45 3 1 chr6 53071823 53072919 -96444118 + MTA_Mm-int LTR MaLR 1 1098 0 1 989 3317 51 2 0 chr6 53072919 53073314 -96443723 + MTA_Mm LTR MaLR 1 396 0 1 989 213 39 0 0 chr6 53073375 53073401 -96443636 + (GGAAA)n Simple_repeat Simple_repeat 1 26 0 1 989 787 246 96 9 chr6 53073460 53073690 -96443347 - ORR1E LTR MaLR -52 307 58 1 989 333 353 44 19 chr6 53075079 53075238 -96441799 + MER63B DNA AcHobo 273 435 -1 1 989 21 36 0 0 chr6 53075801 53075829 -96441208 + AT_rich Low_complexity Low_complexity 1 28 0 1 989 1533 263 80 18 chr6 53076638 53077148 -96439889 - RCHARR1 DNA MER1_type -430 544 3 1 989 987 231 14 23 chr6 53077157 53077374 -96439663 + B3 SINE B2 2 216 0 1 989 212 259 24 0 chr6 53078180 53078265 -96438772 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 1 989 228 277 0 0 chr6 53078331 53078414 -96438623 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 989 510 316 41 0 chr6 53079496 53079667 -96437370 + B3A SINE B2 4 181 -17 1 989 228 226 0 0 chr6 53079674 53079736 -96437301 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 989 945 134 206 6 chr6 53079842 53080022 -96437015 - B3 SINE B2 0 216 1 1 989 451 254 107 8 chr6 53080329 53080442 -96436595 + B3 SINE B2 73 188 -28 1 989 189 0 0 0 chr6 53080442 53080463 -96436574 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 989 451 254 107 8 chr6 53080463 53080480 -96436557 + B3 SINE B2 189 216 0 1 989 448 168 10 10 chr6 53080686 53080788 -96436249 + CT-rich Low_complexity Low_complexity 1 102 0 1 989 518 250 0 6 chr6 53081873 53082042 -96434995 + (TA)n Simple_repeat Simple_repeat 2 169 0 1 989 264 270 0 26 chr6 53082621 53082697 -96434340 + MTEb LTR MaLR 259 332 -47 1 989 194 62 0 30 chr6 53082977 53083010 -96434027 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 989 468 333 35 0 chr6 53083019 53083160 -96433877 - RSINE1 SINE B4 -14 151 6 1 989 1534 169 154 21 chr6 53083187 53083525 -96433512 + ORR1C2 LTR MaLR 1 383 -1 1 989 309 339 18 0 chr6 53083995 53084160 -96432877 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 990 315 0 0 0 chr6 53084186 53084221 -96432816 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 990 324 0 0 0 chr6 53084221 53084256 -96432781 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 990 487 273 62 8 chr6 53085089 53085218 -96431819 - ORR1E LTR MaLR -223 136 1 1 990 833 213 25 41 chr6 53085275 53085471 -96431566 + B3 SINE B2 1 193 -23 1 990 5886 89 10 6 chr6 53085937 53086769 -96430268 + L1_Mm LINE L1 3931 4765 -1118 1 990 548 290 89 70 chr6 53087045 53087316 -96429721 - B4 SINE B4 -11 281 13 1 990 258 273 98 43 chr6 53087340 53087432 -96429605 - PB1D10 SINE Alu -17 100 4 1 990 206 105 26 0 chr6 53087482 53087520 -96429517 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 990 443 220 236 0 chr6 53087843 53088025 -96429012 - Lx9 LINE L1 0 7644 7420 1 990 245 51 26 0 chr6 53088131 53088170 -96428867 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 990 279 0 0 0 chr6 53088889 53088920 -96428117 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 990 234 278 43 50 chr6 53088920 53089050 -96427987 - L1MB8 LINE L1 -18 6160 6030 1 990 964 312 81 20 chr6 53089675 53090169 -96426868 + L1MB3 LINE L1 5374 5897 -286 1 990 1012 251 127 0 chr6 53090236 53090478 -96426559 - Lx5 LINE L1 -679 6371 6076 1 990 362 346 0 0 chr6 53090493 53090597 -96426440 - PB1D7 SINE Alu -7 113 10 1 990 1826 301 54 14 chr6 53090984 53091686 -96425351 - L1MB2 LINE L1 -85 6086 5357 1 990 246 315 88 10 chr6 53091803 53092008 -96425029 - L1M4 LINE L1 -941 5205 4985 1 990 1574 98 4 13 chr6 53092259 53092487 -96424550 - L1Md_F2 LINE L1 0 6582 6357 1 990 633 14 0 0 chr6 53092715 53092789 -96424248 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 990 467 291 135 32 chr6 53092901 53093271 -96423766 + L1MB2 LINE L1 5759 6166 -5 1 990 261 0 0 0 chr6 53093953 53093982 -96423055 + (T)n Simple_repeat Simple_repeat 1 29 0 1 990 263 297 224 0 chr6 53094656 53094821 -96422216 + Cheshire DNA MER1_type 10 211 -2209 1 990 300 186 0 0 chr6 53095046 53095105 -96421932 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 990 446 280 135 7 chr6 53095942 53096366 -96420671 - L1M4 LINE L1 -735 5449 4973 1 990 300 83 0 0 chr6 53096985 53097033 -96420004 + (T)n Simple_repeat Simple_repeat 1 48 0 1 990 899 220 209 3 chr6 53098407 53098564 -96418473 + ORR1D1 LTR MaLR 1 179 -195 1 990 252 0 0 0 chr6 53098564 53098592 -96418445 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 990 899 220 209 3 chr6 53098592 53098740 -96418297 + ORR1D1 LTR MaLR 180 368 -6 1 990 565 267 43 0 chr6 53098854 53099015 -96418022 + MLT1C LTR MaLR 1 168 -299 1 990 583 317 0 4 chr6 53099046 53099204 -96417833 - ID_B1 SINE B4 0 224 74 1 990 1058 244 33 18 chr6 53099206 53099478 -96417559 - MTD LTR MaLR 0 419 144 1 990 303 306 0 34 chr6 53100079 53100167 -96416870 + ID_B1 SINE B4 103 187 -37 1 990 292 271 0 119 chr6 53100167 53100188 -96416849 + PB1D10 SINE Alu 22 117 0 1 990 198 0 0 0 chr6 53100245 53100267 -96416770 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 990 302 269 14 3 chr6 53101094 53101189 -96415848 - ID4 SINE ID -45 107 13 1 990 255 170 0 0 chr6 53101700 53101747 -96415290 + CT-rich Low_complexity Low_complexity 3 49 0 1 990 1247 64 0 9 chr6 53101752 53102071 -96414966 + (TCC)n Simple_repeat Simple_repeat 1 315 0 1 990 871 163 0 0 chr6 53102073 53102208 -96414829 - B1_Mur4 SINE Alu -14 136 2 1 990 1064 150 125 0 chr6 53103165 53103365 -96413672 - URR1B DNA MER1_type 0 225 1 1 990 202 116 92 28 chr6 53103604 53103746 -96413291 + (TG)n Simple_repeat Simple_repeat 1 151 0 1 990 569 74 66 20 chr6 53103761 53103912 -96413125 + (TG)n Simple_repeat Simple_repeat 1 158 0 1 990 285 328 38 0 chr6 53105317 53105448 -96411589 + MER20 DNA MER1_type 83 218 -1 1 990 396 110 0 58 chr6 53105902 53105989 -96411048 + PB1D10 SINE Alu 2 83 -34 1 990 238 244 37 37 chr6 53106476 53106557 -96410480 + PB1D10 SINE Alu 1 81 -36 1 990 216 0 0 0 chr6 53107097 53107121 -96409916 + (CAAGC)n Simple_repeat Simple_repeat 4 27 0 1 990 207 0 0 0 chr6 53108931 53108954 -96408083 + (T)n Simple_repeat Simple_repeat 1 23 0 1 990 328 219 68 0 chr6 53109180 53109253 -96407784 - ID4 SINE ID -1 82 5 1 990 362 303 70 87 chr6 53109706 53109912 -96407125 + L1_Mur3 LINE L1 4990 5174 -969 1 990 510 46 0 0 chr6 53109912 53109977 -96407060 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 990 456 298 63 33 chr6 53109977 53110292 -96406745 + L1_Mur3 LINE L1 5159 5509 -794 1 990 324 0 0 0 chr6 53110295 53110331 -96406706 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 990 1355 288 101 14 chr6 53110511 53111074 -96405963 + L1MB3 LINE L1 5572 6183 0 1 990 453 175 0 0 chr6 53111081 53111178 -96405859 + L1Md_T LINE L1 6486 6582 0 1 990 901 214 52 9 chr6 53111783 53111995 -96405042 + Lx2B LINE L1 6773 6993 -7 1 990 427 257 6 83 chr6 53112092 53112249 -96404788 + RSINE1 SINE B4 20 164 -1 1 990 1218 71 0 0 chr6 53112249 53112419 -96404618 + (GGGAGA)n Simple_repeat Simple_repeat 6 175 0 1 990 511 344 51 54 chr6 53112581 53112916 -96404121 - MER2 DNA MER2_type 0 345 12 1 990 800 297 21 11 chr6 53113748 53114027 -96403010 + MER2 DNA MER2_type 3 284 -61 1 990 257 316 105 0 chr6 53115085 53115218 -96401819 - MER3 DNA MER1_type -47 162 16 1 990 597 242 130 82 chr6 53115248 53115563 -96401474 + MTEa LTR MaLR 42 371 -8 1 990 1063 191 127 46 chr6 53116539 53116846 -96400191 - IAPEY3_LTR LTR ERVK 0 332 1 1 990 303 250 111 67 chr6 53117060 53117240 -96399797 + MER5A DNA MER1_type 2 189 0 1 990 243 234 0 72 chr6 53117276 53117345 -96399692 + MER5B DNA MER1_type 115 178 0 1 990 491 152 51 0 chr6 53117714 53117832 -96399205 + Lx9 LINE L1 7519 7642 -2 1 990 1025 241 30 26 chr6 53118130 53118398 -96398639 + B4A SINE B4 1 269 -23 1 990 459 82 0 0 chr6 53118399 53118472 -96398565 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 990 342 0 0 0 chr6 53118878 53118916 -96398121 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 990 2484 223 16 10 chr6 53122035 53122520 -96394517 + Lx6 LINE L1 6804 7291 -169 1 990 1683 157 6 40 chr6 53122743 53123094 -96393943 - RLTR19-int LTR ERVK -4115 2022 1684 1 990 605 252 232 25 chr6 53123097 53123382 -96393655 - MTC LTR MaLR -52 369 26 1 990 798 52 26 0 chr6 53123421 53123537 -96393500 + (GA)n Simple_repeat Simple_repeat 2 120 0 1 990 4652 83 22 3 chr6 53123538 53124211 -96392826 - MusHAL1 LINE L1 -731 1981 1296 1 990 11900 49 9 1 chr6 53124219 53126360 -96390677 - L1Md_F3 LINE L1 -14 6570 4412 1 990 40047 45 2 7 chr6 53126374 53132588 -96384449 - L1Md_A LINE L1 -3 6582 243 1 990 8999 96 11 14 chr6 53132588 53134572 -96382465 - L1VL4 LINE L1 -1403 2156 181 1 990 361 125 78 0 chr6 53134606 53134670 -96382367 + Lx7 LINE L1 6722 6790 -906 2 990 567 128 0 84 chr6 53134727 53134846 -96382191 + ORR1B1-int LTR MaLR 1855 1963 0 2 990 1828 131 27 82 chr6 53134853 53135219 -96381818 + ORR1B1 LTR MaLR 41 386 -8 2 990 575 333 0 27 chr6 53135541 53135729 -96381308 + MLT1A1 LTR MaLR 177 359 -49 2 990 217 260 156 18 chr6 53136608 53136728 -96380309 - MIR SINE MIR -51 157 23 2 990 307 272 58 10 chr6 53137152 53137256 -96379781 + MLT2B4 LTR ERVL 109 217 -339 2 990 21 0 0 0 chr6 53137929 53137950 -96379087 + AT_rich Low_complexity Low_complexity 1 21 0 2 990 240 86 0 0 chr6 53138443 53138478 -96378559 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 990 474 250 44 9 chr6 53138480 53138593 -96378444 - B1_Mur2 SINE Alu -21 128 12 2 990 3059 151 41 32 chr6 53138594 53139128 -96377909 + Lx4A LINE L1 6518 7056 -2 2 990 515 230 79 0 chr6 53139611 53139737 -96377300 + L1_Mur3 LINE L1 4964 5099 -781 2 990 7240 114 16 14 chr6 53139735 53140978 -96376059 - Lx LINE L1 -5 6649 5414 2 990 230 0 33 0 chr6 53140978 53141008 -96376029 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 990 1222 41 0 0 chr6 53141013 53141158 -96375879 - B1_Mus2 SINE Alu 0 147 3 2 990 4376 159 1 30 chr6 53141158 53141419 -96375618 - Lx LINE L1 -470 5413 5152 2 990 16153 115 22 12 chr6 53141419 53144792 -96372245 - L1VL2 LINE L1 -2298 3845 421 2 990 3491 198 61 8 chr6 53144791 53145544 -96371493 + Lx7 LINE L1 5088 5880 0 2 990 440 90 30 0 chr6 53145551 53145618 -96371419 + ORR1C2 LTR MaLR 316 384 0 2 990 247 302 98 23 chr6 53145625 53145798 -96371239 + Lx7 LINE L1 5960 6145 -1551 2 990 405 0 0 0 chr6 53145947 53145992 -96371045 + (CAAAT)n Simple_repeat Simple_repeat 2 46 0 2 990 2905 12 0 0 chr6 53146125 53146447 -96370590 - RLTRETN_Mm LTR ERVK 0 322 1 2 990 3763 237 47 60 chr6 53146462 53148163 -96368874 + RMER1A Other Other 1 868 -162 2 990 315 71 0 0 chr6 53148163 53148205 -96368832 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 990 1777 298 63 14 chr6 53148206 53148594 -96368443 + Lx7 LINE L1 6573 6977 -719 2 990 401 0 20 0 chr6 53148594 53148643 -96368394 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 990 1777 300 68 16 chr6 53148643 53148911 -96368126 + Lx7 LINE L1 6978 7273 -200 2 990 259 293 117 91 chr6 53150162 53150316 -96366721 + B4 SINE B4 124 281 -11 2 990 390 85 0 0 chr6 53150340 53150399 -96366638 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 990 225 312 0 0 chr6 53150627 53150704 -96366333 - MER103 DNA DNA -74 92 16 2 990 423 262 38 57 chr6 53152612 53152770 -96364267 + B4A SINE B4 1 155 -137 2 990 192 125 0 0 chr6 53152853 53152885 -96364152 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 990 23 33 0 0 chr6 53155805 53155835 -96361202 + AT_rich Low_complexity Low_complexity 1 30 0 2 990 424 268 289 35 chr6 53155903 53156131 -96360906 - B4A SINE B4 -4 288 3 2 990 331 298 0 21 chr6 53157091 53157187 -96359850 + CT-rich Low_complexity Low_complexity 3 96 0 2 990 391 311 106 18 chr6 53157425 53157595 -96359442 - MER45C DNA Tip100 -764 189 5 2 990 1661 231 14 22 chr6 53157833 53158201 -96358836 + ORR1D2 LTR MaLR 5 369 -1 2 990 193 333 89 71 chr6 53158405 53158886 -96358151 + L2 LINE L2 2336 2825 -594 2 990 1371 244 69 75 chr6 53160796 53161302 -96355735 - RLTR17 LTR ERVK -85 607 105 2 990 256 200 25 0 chr6 53161764 53161844 -96355193 + CT-rich Low_complexity Low_complexity 4 85 0 2 990 576 29 0 0 chr6 53162854 53162924 -96354113 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 990 282 116 0 0 chr6 53162924 53162967 -96354070 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 990 661 268 90 79 chr6 53162977 53163244 -96353793 - B4 SINE B4 -14 278 9 2 990 350 309 37 0 chr6 53163674 53163810 -96353227 - MER106B DNA MER1_type -4 1055 915 2 990 513 51 50 10 chr6 53163814 53163913 -96353124 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 990 464 232 71 0 chr6 53163925 53164037 -96353000 + B1F SINE Alu 3 122 -27 2 990 2139 294 25 23 chr6 53164037 53164608 -96352429 + Lx5 LINE L1 6461 7032 -18 2 990 198 0 0 0 chr6 53164619 53164641 -96352396 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2 990 474 18 0 0 chr6 53164721 53164776 -96352261 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 990 305 305 79 71 chr6 53165061 53165378 -96351659 + MLT1D LTR MaLR 66 387 -80 2 990 264 59 0 0 chr6 53165636 53165670 -96351367 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 990 244 214 271 0 chr6 53165676 53165746 -96351291 - RSINE1 SINE B4 -76 89 1 2 990 471 200 50 29 chr6 53165831 53165970 -96351067 - L1MC4a LINE L1 -1995 5887 5746 2 990 357 197 56 0 chr6 53167582 53167653 -96349384 - MLT1A0 LTR MaLR -2 363 289 2 990 365 350 56 70 chr6 53167718 53167933 -96349104 - LTR16A LTR ERVL -150 301 90 2 990 963 121 236 0 chr6 53169499 53169681 -96347356 + URR1A DNA MER1_type 1 225 -1 2 990 1356 50 0 0 chr6 53169794 53170036 -96347001 + (CA)n Simple_repeat Simple_repeat 1 242 0 2 990 1052 50 7 0 chr6 53170172 53170312 -96346725 + B1_Mus2 SINE Alu 6 146 -1 2 990 345 75 0 0 chr6 53170318 53170371 -96346666 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 2 990 833 249 53 0 chr6 53170378 53170623 -96346414 + MER2 DNA MER2_type 88 345 0 2 990 21 0 0 0 chr6 53171660 53171681 -96345356 + AT_rich Low_complexity Low_complexity 1 21 0 2 990 423 0 0 0 chr6 53172572 53172619 -96344418 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 990 237 33 0 0 chr6 53172619 53172648 -96344389 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 990 270 81 0 0 chr6 53172911 53172948 -96344089 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 990 293 279 22 44 chr6 53173323 53173413 -96343624 - PB1D10 SINE Alu -28 89 2 2 990 336 275 43 11 chr6 53173433 53173446 -96343591 - ID_B1 SINE B4 -128 96 2 2 990 390 231 13 13 chr6 53173446 53173525 -96343512 - ID4 SINE ID -3 80 2 2 990 190 371 34 0 chr6 53175329 53175418 -96341619 - MIRc SINE MIR -120 148 57 2 990 1248 253 49 25 chr6 53175653 53175804 -96341233 + MTE2b LTR MaLR 1 158 -221 2 990 2852 162 72 99 chr6 53175804 53176429 -96340608 - RMER19C LTR ERVK -1 610 3 2 990 1248 253 49 25 chr6 53176429 53176642 -96340395 + MTE2b LTR MaLR 159 374 -5 2 990 814 275 150 29 chr6 53177444 53177751 -96339286 - MTD LTR MaLR -68 351 8 2 990 3176 186 112 58 chr6 53178246 53179066 -96337971 + RMER13B LTR ERVK 45 908 0 2 990 739 311 64 42 chr6 53180434 53180594 -96336443 + MTEa LTR MaLR 13 175 -204 2 990 2055 208 29 132 chr6 53180594 53180712 -96336325 - RMER19C LTR ERVK 0 611 506 2 990 1093 90 7 0 chr6 53180712 53180857 -96336180 + B1_Mus1 SINE Alu 2 147 -1 2 990 2055 208 29 132 chr6 53180857 53181419 -96335618 - RMER19C LTR ERVK -106 505 1 2 990 739 311 64 42 chr6 53181419 53181617 -96335420 + MTEa LTR MaLR 176 379 0 2 990 534 244 52 103 chr6 53181959 53182133 -96334904 + RMER30 DNA MER1_type 36 200 -2 2 990 328 271 123 65 chr6 53182253 53182407 -96334630 - RSINE1 SINE B4 0 165 3 2 990 1111 149 39 15 chr6 53183130 53183334 -96333703 - URR1A DNA MER1_type -11 215 7 2 990 319 303 20 0 chr6 53183400 53183499 -96333538 - MIRb SINE MIR -78 190 90 2 990 291 352 115 6 chr6 53183962 53184145 -96332892 + AmnSINE1 SINE SINE 3 205 -370 2 990 299 45 0 22 chr6 53184474 53184520 -96332517 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 2 990 1813 249 122 26 chr6 53184683 53185656 -96331381 + L1MA8 LINE L1 4826 5901 -390 2 990 227 241 57 57 chr6 53185749 53185872 -96331165 + L1MA8 LINE L1 6158 6280 -11 2 990 547 327 37 23 chr6 53185992 53186208 -96330829 + MER20 DNA MER1_type 1 219 0 2 990 220 348 0 0 chr6 53188056 53188125 -96328912 - BC1_Mm scRNA scRNA -66 86 18 2 990 845 240 19 61 chr6 53188204 53188417 -96328620 + B3 SINE B2 7 210 -6 2 990 207 305 48 0 chr6 53189133 53189238 -96327799 + MIRc SINE MIR 53 162 -106 2 990 752 200 26 39 chr6 53189566 53189756 -96327281 + B3A SINE B2 4 190 -5 2 990 217 216 53 46 chr6 53189872 53190003 -96327034 + (CCAA)n Simple_repeat Simple_repeat 3 134 0 2 990 313 286 35 2 chr6 53190087 53190190 -96326847 - PB1 SINE Alu 0 120 12 2 990 379 353 19 13 chr6 53190840 53190995 -96326042 - RSINE1 SINE B4 -8 157 2 2 990 1969 142 22 17 chr6 53191157 53191514 -96325523 + ORR1B2 LTR MaLR 1 359 -8 2 990 810 131 18 13 chr6 53191800 53191960 -96325077 - ORR1B2 LTR MaLR -204 170 1 2 990 986 241 58 14 chr6 53192112 53192458 -96324579 - Charlie2b DNA MER1_type -6 2776 2416 2 990 554 286 74 42 chr6 53192957 53193242 -96323795 - Lx7 LINE L1 -1336 6360 6067 2 990 1489 155 44 31 chr6 53193343 53193636 -96323401 + ORR1A4 LTR MaLR 29 325 -4 2 990 2752 307 39 32 chr6 53194298 53195258 -96321779 + Lx8 LINE L1 6371 7336 -137 2 990 1607 154 90 34 chr6 53195298 53195653 -96321384 - RMER13A LTR ERVK -485 375 1 2 990 423 56 0 0 chr6 53195763 53195817 -96321220 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 990 405 0 0 0 chr6 53196057 53196102 -96320935 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 990 223 328 33 0 chr6 53196103 53196164 -96320873 + ID_B1 SINE B4 87 149 -75 2 990 340 193 0 33 chr6 53196520 53196611 -96320426 - RLTR15 LTR ERVK -238 121 34 2 990 570 54 0 0 chr6 53196632 53196706 -96320331 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 2 990 261 320 21 90 chr6 53196771 53196960 -96320077 - Charlie2b DNA MER1_type -812 1970 1795 2 990 1065 251 50 66 chr6 53197288 53197612 -96319425 - MTE2a LTR MaLR -4 375 44 2 990 2359 97 22 0 chr6 53197612 53197932 -96319105 + ORR1A2 LTR MaLR 1 327 0 2 990 1065 251 50 66 chr6 53197932 53197986 -96319051 - MTE2a LTR MaLR -336 43 3 2 990 505 292 64 60 chr6 53198178 53198444 -96318593 + RMER15 LTR ERVL 290 556 -19 2 990 216 132 53 0 chr6 53198500 53198538 -96318499 + B1_Mus1 SINE Alu 21 60 -88 2 990 440 175 0 8 chr6 53198547 53198674 -96318363 + GA-rich Low_complexity Low_complexity 2 127 0 3 990 1328 64 0 4 chr6 53199240 53199476 -96317561 + (CA)n Simple_repeat Simple_repeat 1 234 0 3 990 21 0 0 0 chr6 53199941 53199962 -96317075 + AT_rich Low_complexity Low_complexity 1 21 0 3 990 854 234 37 4 chr6 53199962 53200207 -96316830 - L1MA6 LINE L1 -6 6294 6042 3 990 186 43 0 0 chr6 53200668 53200691 -96316346 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 3 990 768 99 0 0 chr6 53200692 53200803 -96316234 + (GGGAGA)n Simple_repeat Simple_repeat 5 115 0 3 990 395 258 40 16 chr6 53203167 53203293 -96313744 - B1F1 SINE Alu -20 129 1 3 990 432 289 59 59 chr6 53203336 53203626 -96313411 + L1MD LINE L1 5336 5625 -734 3 990 261 0 0 0 chr6 53203792 53203821 -96313216 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 3 990 605 26 26 0 chr6 53204020 53204098 -96312939 + (GAAAA)n Simple_repeat Simple_repeat 2 81 0 3 990 1091 56 42 0 chr6 53204259 53204401 -96312636 + B1_Mus1 SINE Alu 1 148 0 3 990 926 240 67 21 chr6 53204522 53204813 -96312224 + MTD LTR MaLR 2 322 -97 3 990 181 344 83 15 chr6 53204911 53205044 -96311993 - L3 LINE CR1 -1 4488 4347 3 990 245 322 0 0 chr6 53205136 53205195 -96311842 + MER33 DNA MER1_type 7 65 -259 3 990 633 90 0 0 chr6 53205812 53205901 -96311136 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 3 990 447 325 111 62 chr6 53205968 53206417 -96310620 - L3 LINE CR1 -804 3685 3215 3 990 516 132 0 0 chr6 53206712 53206795 -96310242 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 990 211 176 68 0 chr6 53207017 53207091 -96309946 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 990 11219 78 40 8 chr6 53207139 53209403 -96307634 + L1VL2 LINE L1 177 2526 -1089 3 990 180 289 76 38 chr6 53209403 53209482 -96307555 + MER5A DNA MER1_type 2 83 -106 3 990 264 263 81 0 chr6 53210344 53210443 -96306594 + Tigger5 DNA MER2_type 2292 2398 -8 3 990 351 96 0 0 chr6 53210741 53210793 -96306244 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 990 357 304 79 16 chr6 53210797 53210924 -96306113 - B4 SINE B4 0 292 158 3 990 303 314 39 0 chr6 53210931 53211033 -96306004 - MLT2B5 LTR ERVL -607 110 5 3 990 839 251 42 28 chr6 53211711 53211824 -96305213 + B3 SINE B2 1 113 -103 3 990 3218 54 26 0 chr6 53211824 53212214 -96304823 - MTB LTR MaLR 0 400 1 3 990 839 251 42 28 chr6 53212214 53212313 -96304724 + B3 SINE B2 114 216 0 3 990 225 0 0 0 chr6 53213611 53213636 -96303401 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 3 990 619 169 6 25 chr6 53213992 53214150 -96302887 + G-rich Low_complexity Low_complexity 6 160 0 3 990 362 288 44 76 chr6 53214157 53214315 -96302722 + B4 SINE B4 3 155 -137 3 990 288 229 30 0 chr6 53214720 53214807 -96302230 - ID4_ SINE ID -46 106 18 3 991 473 53 0 39 chr6 53215262 53215340 -96301697 + (T)n Simple_repeat Simple_repeat 1 75 0 3 991 373 286 165 0 chr6 53215974 53216107 -96300930 - L1MEd LINE L1 -5758 361 207 3 991 196 190 31 94 chr6 53219651 53219715 -96297322 - MIR3 SINE MIR -11 197 138 3 991 810 100 0 0 chr6 53222694 53222834 -96294203 + (TC)n Simple_repeat Simple_repeat 1 140 0 3 991 21 0 0 0 chr6 53222939 53222960 -96294077 + AT_rich Low_complexity Low_complexity 1 21 0 3 991 225 65 0 0 chr6 53223732 53223763 -96293274 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 991 432 0 0 0 chr6 53223803 53223851 -96293186 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 991 565 230 22 33 chr6 53223852 53224036 -96293001 - L1MB4 LINE L1 -5 6175 5994 3 991 180 0 0 0 chr6 53224383 53224403 -96292634 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 991 850 231 46 0 chr6 53224410 53224605 -96292432 - B3 SINE B2 -11 205 2 3 991 422 36 0 18 chr6 53224753 53224810 -96292227 + (TTA)n Simple_repeat Simple_repeat 2 57 0 3 991 252 281 24 24 chr6 53225302 53225386 -96291651 - Tigger5 DNA MER2_type 0 2406 2323 3 991 245 289 170 0 chr6 53225648 53225783 -96291254 + L1MC LINE L1 5666 5823 -2059 3 991 1559 209 108 8 chr6 53226101 53226482 -96290555 - MTD LTR MaLR 0 419 1 3 991 206 357 83 19 chr6 53226999 53227156 -96289881 + MIRb SINE MIR 34 200 -68 3 991 1896 183 98 13 chr6 53228661 53229048 -96287989 - MTC LTR MaLR -1 420 1 3 991 1686 185 72 22 chr6 53229264 53229624 -96287413 + ORR1C1 LTR MaLR 1 378 0 3 991 676 318 85 37 chr6 53229678 53230138 -96286899 - MER45B DNA Tip100 -73 967 486 3 991 499 351 51 32 chr6 53230236 53230551 -96286486 - MER45B DNA Tip100 -719 321 1 3 991 609 63 10 21 chr6 53231116 53231213 -96285824 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 991 607 219 0 11 chr6 53231317 53231497 -96285540 + (TG)n Simple_repeat Simple_repeat 1 178 0 3 991 1055 282 60 14 chr6 53231536 53231889 -96285148 + Lx8 LINE L1 6198 6566 -907 3 991 368 111 16 0 chr6 53231995 53232058 -96284979 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 991 2399 278 44 62 chr6 53232195 53233080 -96283957 + Lx8 LINE L1 6598 7466 -7 3 991 987 221 34 10 chr6 53233853 53234059 -96282978 - B3 SINE B2 -5 211 1 3 991 542 296 23 64 chr6 53234168 53234388 -96282649 + B4A SINE B4 1 211 -81 3 991 21 57 0 0 chr6 53237159 53237194 -96279843 + GC_rich Low_complexity Low_complexity 1 35 0 3 991 207 220 0 0 chr6 53237881 53237931 -96279106 + (CGG)n Simple_repeat Simple_repeat 3 52 0 3 991 23 0 0 0 chr6 53240211 53240234 -96276803 + AT_rich Low_complexity Low_complexity 1 23 0 3 991 456 19 0 0 chr6 53240968 53241021 -96276016 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 991 279 0 0 0 chr6 53241021 53241051 -96275986 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 991 24 0 0 0 chr6 53241489 53241513 -96275524 + AT_rich Low_complexity Low_complexity 1 24 0 3 991 287 203 0 13 chr6 53243300 53243375 -96273662 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 991 350 299 10 0 chr6 53244988 53245085 -96271952 - PB1D10 SINE Alu -9 108 11 3 991 627 218 135 57 chr6 53245161 53245390 -96271647 - MER33 DNA MER1_type -76 248 2 3 991 226 331 62 19 chr6 53245405 53245565 -96271472 - MER5B DNA MER1_type -7 171 5 3 991 297 359 63 7 chr6 53245730 53245873 -96271164 + RSINE1 SINE B4 13 163 -2 3 991 492 62 0 0 chr6 53246364 53246428 -96270609 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 991 342 214 35 23 chr6 53247724 53247810 -96269227 - PB1 SINE Alu 0 127 41 3 991 281 219 129 50 chr6 53247727 53247828 -96269209 - ID_B1 SINE B4 -5 219 111 3 991 182 37 0 36 chr6 53248302 53248330 -96268707 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 991 350 227 108 9 chr6 53248515 53248626 -96268411 + L1MB2 LINE L1 6044 6165 -6 3 991 251 222 47 16 chr6 53248873 53248937 -96268100 - RSINE1 SINE B4 -97 68 3 3 991 285 222 111 0 chr6 53249769 53249841 -96267196 + ID4 SINE ID 2 81 -2 3 991 494 322 45 20 chr6 53249851 53250095 -96266942 + L1MB7 LINE L1 5926 6175 -9 3 991 356 59 20 0 chr6 53250547 53250598 -96266439 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 991 654 188 0 0 chr6 53251089 53251417 -96265620 + (CA)n Simple_repeat Simple_repeat 1 328 0 3 991 626 225 39 0 chr6 53251543 53251672 -96265365 - B1F2 SINE Alu -15 134 1 3 991 249 285 107 6 chr6 53252106 53252265 -96264772 - L1M5 LINE L1 -209 5915 5741 3 991 360 43 0 0 chr6 53252672 53252718 -96264319 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 991 330 81 40 26 chr6 53252718 53252794 -96264243 + (CAGA)n Simple_repeat Simple_repeat 2 78 0 3 991 348 265 87 71 chr6 53253354 53253606 -96263431 - L2 LINE L2 -728 2691 2436 3 991 786 274 92 96 chr6 53255264 53255818 -96261219 - MLT1F2 LTR MaLR 0 560 9 3 991 657 262 16 27 chr6 53256334 53256518 -96260519 + B3A SINE B2 1 182 -16 3 991 21 0 0 0 chr6 53256700 53256721 -96260316 + AT_rich Low_complexity Low_complexity 1 21 0 3 991 423 0 0 0 chr6 53258314 53258361 -96258676 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 991 796 269 126 15 chr6 53258366 53258627 -96258410 - B4 SINE B4 -2 290 1 3 991 198 0 0 0 chr6 53259286 53259308 -96257729 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3 991 378 0 0 0 chr6 53259805 53259847 -96257190 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 991 801 208 9 14 chr6 53260027 53260347 -96256690 + CT-rich Low_complexity Low_complexity 1 318 0 3 991 531 0 0 0 chr6 53262363 53262422 -96254615 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 991 400 359 14 47 chr6 53262804 53263082 -96253955 - Charlie19a DNA Charlie -117 269 1 3 991 211 28 0 53 chr6 53263388 53263426 -96253611 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 3 991 277 324 28 9 chr6 53263784 53263890 -96253147 - MIR SINE MIR -132 130 23 3 991 822 106 0 0 chr6 53265039 53265162 -96251875 + (TCTA)n Simple_repeat Simple_repeat 4 126 0 3 991 694 238 46 25 chr6 53265246 53265483 -96251554 + MER121 Unknown Unknown 36 277 -135 3 991 236 30 30 0 chr6 53265493 53265526 -96251511 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 3 991 1148 82 7 0 chr6 53265527 53265674 -96251363 - B1_Mus1 SINE Alu 0 148 1 3 991 191 298 165 9 chr6 53265938 53266053 -96250984 + MIRc SINE MIR 106 238 -30 3 991 765 273 49 0 chr6 53266134 53266339 -96250698 - B3 SINE B2 0 216 2 3 991 627 172 86 8 chr6 53266350 53266467 -96250570 - B1_Mur1 SINE Alu -1 148 23 3 991 587 130 10 0 chr6 53266492 53266592 -96250445 + (TC)n Simple_repeat Simple_repeat 2 102 0 3 991 1506 28 0 0 chr6 53266606 53266785 -96250252 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 3 991 416 322 0 0 chr6 53266785 53266900 -96250137 - ID_B1 SINE B4 -8 216 102 4 991 193 310 58 39 chr6 53267316 53267420 -96249617 - MIRb SINE MIR -1 267 162 4 991 389 327 117 51 chr6 53267423 53267894 -96249143 - LTR40a LTR ERVL 0 519 18 4 991 455 269 22 22 chr6 53268313 53268450 -96248587 + ID_B1 SINE B4 87 223 -1 4 991 243 0 0 0 chr6 53269447 53269474 -96247563 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 4 991 1070 109 6 11 chr6 53270497 53270651 -96246386 + B2_Mm2 SINE B2 1 154 -41 4 991 383 0 0 21 chr6 53270651 53270699 -96246338 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 4 991 1070 109 6 11 chr6 53270699 53270720 -96246317 + B2_Mm2 SINE B2 155 175 -20 4 991 303 308 158 12 chr6 53270807 53270978 -96246059 + MER2 DNA MER2_type 116 311 -34 4 991 1206 226 67 9 chr6 53271115 53271446 -96245591 - MTD LTR MaLR 0 419 70 4 991 1989 302 87 79 chr6 53271662 53272145 -96244892 + MTE-int LTR MaLR 21 509 -1071 4 991 1133 84 0 0 chr6 53272145 53272288 -96244749 - B1_Mus2 SINE Alu 0 147 5 4 991 1989 302 87 79 chr6 53272288 53273039 -96243998 + MTE-int LTR MaLR 510 1265 -315 4 991 770 40 0 0 chr6 53273763 53273864 -96243173 - B1_Mm SINE Alu 0 147 47 4 991 306 188 70 28 chr6 53273806 53273877 -96243160 - RLTR25B LTR ERVK -519 509 436 4 991 324 198 33 44 chr6 53274218 53274308 -96242729 + MLT1A1 LTR MaLR 320 408 0 4 991 279 0 0 0 chr6 53275599 53275630 -96241407 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 991 1019 188 33 33 chr6 53275851 53276065 -96240972 + B3 SINE B2 2 215 -1 4 991 414 0 0 0 chr6 53276095 53276141 -96240896 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 991 1102 249 123 9 chr6 53276188 53276512 -96240525 + MTD LTR MaLR 1 361 -58 4 991 480 117 0 0 chr6 53276824 53276901 -96240136 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 991 931 167 172 0 chr6 53277153 53277345 -96239692 + URR1B DNA MER1_type 1 225 0 4 991 21 0 0 0 chr6 53277820 53277841 -96239196 + AT_rich Low_complexity Low_complexity 1 21 0 4 991 365 335 137 0 chr6 53277926 53278087 -96238950 + MER2 DNA MER2_type 2 184 -161 4 991 343 273 71 62 chr6 53278425 53278636 -96238401 - LTR33 LTR ERVL -302 213 1 4 991 8498 185 52 37 chr6 53278775 53281340 -96235697 - Lx6 LINE L1 -5 7455 4852 4 991 777 301 16 8 chr6 53281817 53282062 -96234975 + MTE2b LTR MaLR 1 247 -132 4 991 566 170 35 6 chr6 53282233 53282405 -96234632 + CT-rich Low_complexity Low_complexity 2 178 0 4 991 308 225 65 43 chr6 53282468 53282561 -96234476 + RMER10A LTR ERVL 321 415 -27 4 991 333 302 0 0 chr6 53283046 53283142 -96233895 + CT-rich Low_complexity Low_complexity 1 96 0 4 991 243 42 20 59 chr6 53283327 53283378 -96233659 + (CAAAAA)n Simple_repeat Simple_repeat 1 49 0 4 991 795 50 0 0 chr6 53283811 53283911 -96233126 + (GGA)n Simple_repeat Simple_repeat 3 102 0 4 991 360 148 0 0 chr6 53283959 53284020 -96233017 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 991 308 280 100 46 chr6 53284390 53284671 -96232366 - RMER10A LTR ERVL -25 417 122 4 991 416 273 34 61 chr6 53285209 53285357 -96231680 - ID_B1 SINE B4 0 224 81 4 991 642 307 55 11 chr6 53285401 53285674 -96231363 + B4 SINE B4 2 286 -6 4 991 1544 228 54 21 chr6 53285715 53286104 -96230933 - MTD LTR MaLR 0 419 18 4 991 333 365 15 20 chr6 53287122 53287326 -96229711 + MIRb SINE MIR 27 229 -39 4 991 206 207 0 33 chr6 53289166 53289226 -96227811 + (TAA)n Simple_repeat Simple_repeat 3 60 0 4 991 258 235 141 10 chr6 53290219 53290318 -96226719 - L1MB7 LINE L1 -13 6171 6060 4 991 660 233 216 7 chr6 53290320 53290625 -96226412 + MTEb LTR MaLR 1 369 -10 4 991 876 243 67 4 chr6 53290638 53290878 -96226159 + MTEb-int LTR MaLR 4 258 -1322 4 991 294 301 72 126 chr6 53290872 53290997 -96226040 + MTEb LTR MaLR 214 319 -60 4 991 1841 187 90 35 chr6 53290997 53291396 -96225641 + MTC LTR MaLR 1 421 0 4 991 294 301 72 126 chr6 53291396 53291437 -96225600 + MTEb LTR MaLR 320 371 -8 4 991 284 268 99 0 chr6 53291456 53291575 -96225462 - L1MB7 LINE L1 -157 6017 5888 4 991 337 255 114 54 chr6 53291642 53291791 -96225246 - L1MB7 LINE L1 -391 5793 5636 4 991 270 116 0 0 chr6 53291910 53291953 -96225084 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 991 628 249 155 18 chr6 53292002 53292388 -96224649 - L1MB7 LINE L1 -586 5592 5156 4 991 2192 261 80 18 chr6 53292416 53292534 -96224503 - Lx8 LINE L1 -2 7471 7334 4 991 252 111 0 0 chr6 53292534 53292579 -96224458 + (TTA)n Simple_repeat Simple_repeat 1 45 0 4 991 2192 261 80 18 chr6 53292579 53293181 -96223856 - Lx8 LINE L1 -140 7333 6707 4 991 2330 282 86 89 chr6 53293187 53293893 -96223144 - L1MB7 LINE L1 -1018 5128 4443 4 991 1207 61 0 0 chr6 53293893 53294040 -96222997 + B1_Mus1 SINE Alu 2 148 0 4 991 182 62 0 30 chr6 53294042 53294075 -96222962 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 991 2330 282 86 89 chr6 53294075 53295004 -96222033 - L1MB7 LINE L1 -1704 4442 3495 4 991 183 129 0 0 chr6 53295009 53295040 -96221997 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 991 231 232 0 35 chr6 53295088 53295204 -96221833 + (TATG)n Simple_repeat Simple_repeat 4 115 0 4 991 245 244 106 38 chr6 53295275 53295407 -96221630 - L1MB7 LINE L1 -2653 3493 3353 4 991 522 308 51 5 chr6 53296101 53296297 -96220740 + MIRc SINE MIR 33 237 -31 4 991 438 229 113 48 chr6 53298269 53298360 -96218677 + B1F SINE Alu 11 113 -36 4 991 1082 271 104 9 chr6 53298360 53298706 -96218331 + MTEa LTR MaLR 1 379 0 4 991 438 229 113 48 chr6 53298706 53298738 -96218299 + B1F SINE Alu 114 142 -7 4 991 537 16 0 0 chr6 53298822 53298884 -96218153 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 991 276 315 53 56 chr6 53299489 53299664 -96217373 - MIRb SINE MIR -46 222 54 4 991 505 299 69 49 chr6 53300230 53300434 -96216603 - MIR SINE MIR 0 262 55 4 991 343 325 93 46 chr6 53301318 53301534 -96215503 - ORR1E LTR MaLR -130 229 4 4 991 339 241 11 44 chr6 53301839 53301930 -96215107 + BC1_Mm scRNA scRNA 1 88 -64 4 991 414 250 83 57 chr6 53304615 53304772 -96212265 + MTEb LTR MaLR 206 366 -13 4 991 1321 248 146 40 chr6 53304793 53305314 -96211723 + MTEb-int LTR MaLR 19 594 -986 4 991 620 218 56 0 chr6 53305311 53305453 -96211584 + MTEb-int LTR MaLR 1330 1479 -101 4 991 1015 131 0 8 chr6 53305456 53305712 -96211325 + (TTCC)n Simple_repeat Simple_repeat 1 253 0 4 991 644 253 191 23 chr6 53305766 53306069 -96210968 + ORR1E LTR MaLR 4 357 -2 4 991 690 241 17 46 chr6 53306424 53306598 -96210439 - B3 SINE B2 0 216 48 4 991 272 257 34 68 chr6 53306603 53306749 -96210288 + Lx7 LINE L1 7517 7657 -39 4 991 315 0 0 0 chr6 53306749 53306784 -96210253 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 991 345 47 0 0 chr6 53306784 53306826 -96210211 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 991 234 0 0 0 chr6 53306826 53306852 -96210185 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 991 8030 168 53 35 chr6 53306859 53308681 -96208356 - Lx4A LINE L1 -26 7434 5587 4 991 1803 111 18 7 chr6 53308712 53308993 -96208044 + Lx4A LINE L1 6775 7058 0 4 991 275 200 0 0 chr6 53309007 53309052 -96207985 - B3 SINE B2 -171 45 1 4 991 254 345 11 11 chr6 53309058 53309149 -96207888 - MIR SINE MIR -118 144 54 4 991 576 286 64 54 chr6 53309815 53310018 -96207019 + B4 SINE B4 84 288 -4 4 991 180 125 0 0 chr6 53310031 53310063 -96206974 + (C)n Simple_repeat Simple_repeat 1 32 0 4 991 1241 21 0 14 chr6 53310084 53310229 -96206808 - B1_Mm SINE Alu 0 147 5 4 991 297 0 0 0 chr6 53310668 53310701 -96206336 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 4 991 1376 224 88 13 chr6 53310845 53311233 -96205804 + MTD LTR MaLR 3 419 0 4 991 1043 232 10 0 chr6 53312486 53312693 -96204344 + B3 SINE B2 2 210 -6 4 991 685 194 120 26 chr6 53312995 53313186 -96203851 + MTC LTR MaLR 1 209 -212 4 991 342 45 0 0 chr6 53314342 53314386 -96202651 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 991 263 200 14 0 chr6 53314731 53314801 -96202236 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 991 245 27 54 0 chr6 53315162 53315199 -96201838 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 991 243 0 0 0 chr6 53316260 53316287 -96200750 + (A)n Simple_repeat Simple_repeat 1 27 0 4 991 223 77 0 49 chr6 53316473 53316514 -96200523 - L2a LINE L2 -1 3425 3387 4 991 22 35 0 0 chr6 53318199 53318228 -96198809 + AT_rich Low_complexity Low_complexity 1 29 0 4 991 230 317 81 8 chr6 53318363 53318487 -96198550 + L1MA5 LINE L1 6138 6270 -30 4 991 1037 156 72 14 chr6 53318626 53318834 -96198203 - URR1A DNA MER1_type 0 226 7 4 991 565 307 69 0 chr6 53321625 53321814 -96195223 - MER20 DNA MER1_type -7 212 11 4 991 216 333 14 0 chr6 53323334 53323403 -96193634 + PB1D10 SINE Alu 22 91 -26 4 991 307 279 71 60 chr6 53323496 53323655 -96193382 + B2_Mm2 SINE B2 3 159 -36 4 991 363 44 0 0 chr6 53323655 53323700 -96193337 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 991 307 279 71 60 chr6 53323700 53323723 -96193314 + B2_Mm2 SINE B2 160 187 -8 4 991 1015 221 45 0 chr6 53323748 53323947 -96193090 + B3 SINE B2 4 211 -5 4 991 32 26 0 0 chr6 53326342 53326381 -96190656 + AT_rich Low_complexity Low_complexity 1 39 0 4 991 388 309 61 1 chr6 53326594 53326767 -96190270 + MIRc SINE MIR 20 200 -68 4 991 242 242 0 61 chr6 53328654 53328720 -96188317 + ID4 SINE ID 2 63 -20 4 991 369 62 0 0 chr6 53329042 53329090 -96187947 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 991 706 255 0 7 chr6 53329090 53329244 -96187793 - B3 SINE B2 -63 153 1 4 991 477 133 0 0 chr6 53329579 53329677 -96187360 + (GA)n Simple_repeat Simple_repeat 2 99 0 4 991 183 42 0 0 chr6 53330911 53330935 -96186102 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 991 933 249 9 0 chr6 53332550 53332763 -96184274 - B3 SINE B2 0 216 2 4 991 21 57 0 0 chr6 53332808 53332843 -96184194 + AT_rich Low_complexity Low_complexity 1 35 0 4 991 264 122 0 0 chr6 53332904 53332945 -96184092 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 991 349 175 44 0 chr6 53333366 53333480 -96183557 + (CAGAGA)n Simple_repeat Simple_repeat 2 120 0 4 991 981 259 9 101 chr6 53333495 53333813 -96183224 - B4 SINE B4 -3 289 1 4 991 915 276 128 28 chr6 53334150 53334578 -96182459 - L1MA6 LINE L1 -11 6289 5819 4 991 525 32 0 0 chr6 53336624 53336687 -96180350 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 991 937 34 0 0 chr6 53336913 53337030 -96180007 + B1_Mm SINE Alu 21 137 -10 5 991 522 0 0 0 chr6 53337030 53337088 -96179949 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 991 468 0 0 0 chr6 53337794 53337846 -96179191 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 991 277 312 52 0 chr6 53338996 53339092 -96177945 - PB1D10 SINE Alu -13 104 4 5 991 381 348 60 39 chr6 53340517 53340801 -96176236 + L4 LINE RTE 1650 1939 -90 5 991 610 100 0 20 chr6 53341407 53341509 -96175528 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 5 991 504 0 0 0 chr6 53341736 53341792 -96175245 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 991 373 245 30 10 chr6 53342846 53342945 -96174092 - L2 LINE L2 -534 2885 2785 5 991 180 0 0 0 chr6 53343448 53343468 -96173569 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 991 342 0 0 0 chr6 53343626 53343664 -96173373 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 991 486 0 0 0 chr6 53344708 53344762 -96172275 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 5 123 222 165 37 37 chr6 53346264 53346371 -96170666 + (CACCAT)n Simple_repeat Simple_repeat 6 112 0 5 992 384 22 0 0 chr6 53347210 53347255 -96169782 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 5 992 291 28 0 0 chr6 53349342 53349378 -96167659 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 992 630 39 0 0 chr6 53349378 53349454 -96167583 + (GA)n Simple_repeat Simple_repeat 1 77 0 5 992 287 343 9 0 chr6 53349454 53349562 -96167475 + (TG)n Simple_repeat Simple_repeat 2 110 0 5 992 221 0 0 33 chr6 53350408 53350438 -96166599 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 5 992 181 279 29 14 chr6 53351406 53351475 -96165562 - MIRm SINE MIR -4 272 203 5 992 369 0 0 0 chr6 53352419 53352460 -96164577 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 992 1074 89 0 0 chr6 53352460 53352661 -96164376 + (GA)n Simple_repeat Simple_repeat 1 201 0 5 992 36127 35 0 0 chr6 53352850 53358077 -96158960 + L1Md_T LINE L1 265 5589 -297 5 992 9194 4 0 0 chr6 53358077 53359073 -96157964 + L1Md_T LINE L1 5590 6585 0 5 992 279 0 0 0 chr6 53359151 53359182 -96157855 + (A)n Simple_repeat Simple_repeat 1 31 0 5 992 683 178 24 0 chr6 53361039 53361208 -96155829 + (TG)n Simple_repeat Simple_repeat 1 173 0 5 992 491 218 12 24 chr6 53361445 53361614 -96155423 + (CATATA)n Simple_repeat Simple_repeat 1 167 0 5 992 432 325 43 52 chr6 53362456 53362667 -96154370 - MLT1C LTR MaLR -175 292 84 5 992 237 132 0 0 chr6 53362668 53362706 -96154331 + (CTG)n Simple_repeat Simple_repeat 1 38 0 5 992 342 187 21 42 chr6 53362717 53362812 -96154225 - Lx7 LINE L1 -19 7677 7585 5 992 980 296 26 10 chr6 53362910 53363258 -96153779 + Lx7 LINE L1 6954 7294 -402 5 992 279 0 0 0 chr6 53363890 53363921 -96153116 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 992 276 30 0 0 chr6 53363923 53363956 -96153081 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 992 216 226 19 0 chr6 53364405 53364458 -96152579 - MIR SINE MIR -122 140 87 5 992 265 311 140 9 chr6 53365121 53365228 -96151809 + ID_B1 SINE B4 102 222 -2 5 992 304 315 23 8 chr6 53366064 53366195 -96150842 - MIR SINE MIR -84 178 46 5 992 189 159 0 0 chr6 53366890 53366934 -96150103 + (ATG)n Simple_repeat Simple_repeat 1 44 0 5 992 330 341 67 6 chr6 53367153 53367249 -96149788 - L1M5 LINE L1 -2886 3260 3163 5 992 465 62 0 0 chr6 53367249 53367314 -96149723 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 5 992 330 341 67 6 chr6 53367314 53367382 -96149655 - L1M5 LINE L1 -2984 3162 3087 5 992 426 313 80 0 chr6 53367515 53367678 -96149359 - B3A SINE B2 -20 178 3 5 992 463 274 57 16 chr6 53367680 53367866 -96149171 - L1M5 LINE L1 -3220 2926 2738 5 992 185 312 0 0 chr6 53368034 53368082 -96148955 + L2a LINE L2 3368 3415 -11 5 992 860 192 154 0 chr6 53369765 53369947 -96147090 + B3 SINE B2 1 210 -6 5 992 275 280 87 70 chr6 53370616 53370731 -96146306 + PB1D10 SINE Alu 1 117 0 5 992 603 284 0 0 chr6 53370745 53370879 -96146158 + RSINE1 SINE B4 3 136 -29 5 992 204 40 0 0 chr6 53371440 53371465 -96145572 + (CAGAGA)n Simple_repeat Simple_repeat 6 30 0 5 992 600 14 0 0 chr6 53372920 53372989 -96144048 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 992 656 149 52 11 chr6 53374973 53375444 -96141593 + (TG)n Simple_repeat Simple_repeat 1 490 0 5 992 396 0 0 0 chr6 53375445 53375489 -96141548 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 992 828 252 29 15 chr6 53376325 53376530 -96140507 + B3 SINE B2 1 208 -8 5 992 273 196 0 0 chr6 53376530 53376586 -96140451 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 992 281 152 39 3 chr6 53376822 53376887 -96140150 - ORR1E LTR MaLR -2 368 292 5 992 695 324 107 45 chr6 53377143 53377676 -96139361 - MER119 DNA MER1_type -14 569 4 5 992 243 0 0 0 chr6 53378362 53378389 -96138648 + (TCG)n Simple_repeat Simple_repeat 1 27 0 5 992 489 34 0 0 chr6 53378389 53378448 -96138589 + (TCC)n Simple_repeat Simple_repeat 2 60 0 5 992 1337 200 137 8 chr6 53378560 53378918 -96138119 + MTD LTR MaLR 1 404 -15 5 992 248 200 33 0 chr6 53380702 53380762 -96136275 + (TCTCTG)n Simple_repeat Simple_repeat 5 66 0 5 992 570 99 0 0 chr6 53380762 53380853 -96136184 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 992 657 294 59 52 chr6 53380875 53381162 -96135875 - B4 SINE B4 -2 290 2 5 992 738 131 0 0 chr6 53383487 53383609 -96133428 + (CAGAGA)n Simple_repeat Simple_repeat 4 125 0 5 992 1382 55 0 0 chr6 53383967 53384132 -96132905 + U1 snRNA snRNA 1 165 0 5 992 465 171 0 0 chr6 53384134 53384222 -96132815 + A-rich Low_complexity Low_complexity 1 88 0 5 992 524 179 0 48 chr6 53384414 53384602 -96132435 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 992 230 269 0 13 chr6 53390731 53390810 -96126227 + MIR SINE MIR 96 169 -93 5 992 441 0 0 0 chr6 53391345 53391394 -96125643 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 992 204 40 0 0 chr6 53393058 53393083 -96123954 + (TTC)n Simple_repeat Simple_repeat 1 25 0 5 992 1033 92 0 40 chr6 53393083 53393231 -96123806 - B1_Mus1 SINE Alu -6 142 1 5 992 761 277 142 0 chr6 53393301 53393590 -96123447 - L3 LINE CR1 -308 4181 3852 5 992 628 275 11 33 chr6 53393599 53393783 -96123254 - L3 LINE CR1 -830 3659 3480 5 992 297 0 0 0 chr6 53394123 53394156 -96122881 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 992 1252 117 133 0 chr6 53395334 53395530 -96121507 - URR1A DNA MER1_type 0 226 5 5 992 22 0 0 0 chr6 53399031 53399053 -96117984 + AT_rich Low_complexity Low_complexity 1 22 0 5 992 327 49 0 0 chr6 53399755 53399796 -96117241 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 992 672 107 0 0 chr6 53400136 53400248 -96116789 + (TC)n Simple_repeat Simple_repeat 1 112 0 5 992 245 280 13 0 chr6 53404102 53404177 -96112860 - MIRb SINE MIR -72 196 121 5 992 358 254 114 215 chr6 53404487 53404785 -96112252 - MTE2b LTR MaLR -90 289 10 5 992 645 294 93 34 chr6 53404830 53405154 -96111883 - Lx8 LINE L1 -2 7471 7129 5 992 245 256 25 13 chr6 53405303 53405382 -96111655 + MIRb SINE MIR 117 196 -72 5 992 606 214 0 0 chr6 53406965 53407105 -96109932 + CT-rich Low_complexity Low_complexity 2 141 0 5 992 23 33 0 0 chr6 53409424 53409454 -96107583 + AT_rich Low_complexity Low_complexity 1 30 0 5 992 242 294 92 46 chr6 53409576 53409729 -96107308 + Charlie15a DNA MER1_type 63 222 -2 5 992 565 302 102 29 chr6 53410451 53410795 -96106242 + MLT1C LTR MaLR 98 466 -1 5 992 3431 13 34 0 chr6 53414213 53414596 -96102441 + MTA_Mm LTR MaLR 1 396 0 5 992 9302 32 3 2 chr6 53414596 53415691 -96101346 + MTA_Mm-int LTR MaLR 1 1096 -2 5 992 3431 13 34 0 chr6 53415693 53416076 -96100961 + MTA_Mm LTR MaLR 1 396 0 5 992 866 98 22 40 chr6 53416398 53416672 -96100365 + (CA)n Simple_repeat Simple_repeat 1 269 0 5 992 700 315 102 16 chr6 53416673 53417044 -96099993 - Lx8 LINE L1 -32 7441 7039 5 992 243 0 0 0 chr6 53419505 53419532 -96097505 + (T)n Simple_repeat Simple_repeat 1 27 0 5 992 254 228 0 34 chr6 53420019 53420078 -96096959 + MIRb SINE MIR 117 173 -95 5 992 498 79 0 0 chr6 53421493 53421569 -96095468 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 992 801 140 0 0 chr6 53421706 53421842 -96095195 + (GAAA)n Simple_repeat Simple_repeat 2 137 0 5 992 220 191 14 29 chr6 53421837 53421907 -96095130 + GA-rich Low_complexity Low_complexity 3 71 0 5 992 450 0 0 0 chr6 53422526 53422576 -96094461 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 992 325 87 0 55 chr6 53422576 53422649 -96094388 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 5 992 366 332 48 52 chr6 53423753 53424001 -96093036 + MIRb SINE MIR 22 268 0 5 992 468 35 0 0 chr6 53426016 53426074 -96090963 + (TATG)n Simple_repeat Simple_repeat 4 61 0 5 992 493 283 138 71 chr6 53426418 53426810 -96090227 - MER21B LTR ERV1 -2 861 444 5 992 440 99 0 14 chr6 53427121 53427193 -96089844 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 992 294 275 0 0 chr6 53427809 53427878 -96089159 - ID4_ SINE ID -3 80 12 5 992 710 283 69 35 chr6 53428151 53428411 -96088626 + B4A SINE B4 10 278 -14 5 992 225 0 0 0 chr6 53428463 53428488 -96088549 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 992 486 46 0 0 chr6 53428489 53428554 -96088483 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 5 992 342 236 14 0 chr6 53429014 53429086 -96087951 - ID4 SINE ID -9 74 2 5 992 280 261 150 18 chr6 53429099 53429212 -96087825 - B1F SINE Alu -6 143 16 5 992 813 212 0 0 chr6 53429535 53429714 -96087323 + CT-rich Low_complexity Low_complexity 2 180 0 5 992 513 261 0 29 chr6 53430452 53430590 -96086447 + ID_B1 SINE B4 80 213 -11 5 992 1506 196 53 10 chr6 53430602 53430901 -96086136 + Lx9 LINE L1 6938 7249 -395 6 992 39433 5 1 0 chr6 53430902 53436479 -96080558 + L1Md_A LINE L1 8 5586 -297 6 992 9180 2 1 0 chr6 53436479 53437474 -96079563 + L1Md_A LINE L1 5587 6582 0 6 992 201 227 0 74 chr6 53437486 53437567 -96079470 + A-rich Low_complexity Low_complexity 1 75 0 6 992 1372 204 98 52 chr6 53437567 53437955 -96079082 + Lx9 LINE L1 7239 7644 0 6 992 4530 82 0 27 chr6 53438108 53438735 -96078302 + L1Md_F2 LINE L1 5972 6581 -1 6 992 284 345 13 33 chr6 53439028 53439178 -96077859 + L1MD1 LINE L1 5794 5940 -302 6 992 501 168 20 0 chr6 53440001 53440102 -96076935 + B1F SINE Alu 13 115 -34 6 992 348 245 177 44 chr6 53441029 53441187 -96075850 - B3A SINE B2 -16 182 4 6 992 275 369 41 41 chr6 53441660 53441807 -96075230 + B1F1 SINE Alu 1 147 -2 6 992 243 0 0 0 chr6 53441809 53441836 -96075201 + (A)n Simple_repeat Simple_repeat 1 27 0 6 992 404 162 0 66 chr6 53441857 53441963 -96075074 + L1Md_F3 LINE L1 6472 6570 -14 6 992 1391 40 11 0 chr6 53442764 53442941 -96074096 + (TCTCCC)n Simple_repeat Simple_repeat 1 179 0 6 992 555 165 0 0 chr6 53442958 53443067 -96073970 + CT-rich Low_complexity Low_complexity 1 109 0 6 992 345 100 0 0 chr6 53444176 53444226 -96072811 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 992 180 163 0 0 chr6 53444225 53444268 -96072769 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 992 477 50 0 0 chr6 53444490 53444550 -96072487 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 992 326 287 94 58 chr6 53445666 53445879 -96071158 - ORR1E LTR MaLR -71 288 73 6 992 381 43 0 0 chr6 53445879 53445926 -96071111 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 992 326 287 94 58 chr6 53445926 53445989 -96071048 - ORR1E LTR MaLR -287 72 2 6 992 617 0 14 0 chr6 53446228 53446301 -96070736 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 992 486 49 0 0 chr6 53447242 53447303 -96069734 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 992 297 0 0 0 chr6 53448421 53448454 -96068583 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 992 396 0 0 0 chr6 53449071 53449115 -96067922 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 992 648 304 82 25 chr6 53450769 53451012 -96066025 + B4 SINE B4 34 290 -2 6 992 195 129 0 0 chr6 53451874 53451905 -96065132 + (TGG)n Simple_repeat Simple_repeat 1 31 0 6 992 195 42 0 0 chr6 53451905 53451929 -96065108 + (GGA)n Simple_repeat Simple_repeat 2 25 0 6 992 227 309 36 0 chr6 53452683 53452767 -96064270 - MIR SINE MIR -34 228 142 6 992 452 81 0 13 chr6 53452816 53452891 -96064146 + (TCC)n Simple_repeat Simple_repeat 3 76 0 6 992 232 229 21 0 chr6 53453304 53453352 -96063685 + ID SINE ID 5 53 -171 6 992 26 0 0 0 chr6 53453376 53453402 -96063635 + AT_rich Low_complexity Low_complexity 1 26 0 6 992 1375 192 186 3 chr6 53453450 53453794 -96063243 + MTD LTR MaLR 2 408 -11 6 992 252 0 0 0 chr6 53453818 53453846 -96063191 + (T)n Simple_repeat Simple_repeat 1 28 0 6 992 1973 116 66 0 chr6 53454329 53454689 -96062348 - L1_Mus3 LINE L1 0 6638 6292 6 992 609 254 98 44 chr6 53454749 53455066 -96061971 + RLTR15 LTR ERVK 1 334 -25 6 992 1008 86 0 0 chr6 53455083 53455223 -96061814 + (GGAGA)n Simple_repeat Simple_repeat 2 141 0 6 992 312 70 0 0 chr6 53455288 53455331 -96061706 + (GGGGA)n Simple_repeat Simple_repeat 3 45 0 6 992 27 0 0 0 chr6 53455714 53455741 -96061296 + AT_rich Low_complexity Low_complexity 1 27 0 6 992 200 359 57 0 chr6 53458191 53458297 -96058740 - MIRc SINE MIR -71 197 86 6 992 555 29 0 0 chr6 53458621 53458690 -96058347 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 992 1512 148 280 15 chr6 53458690 53459019 -96058018 - MTC LTR MaLR -2 419 4 6 992 374 325 6 59 chr6 53459688 53459874 -96057163 + B4A SINE B4 2 172 -120 6 992 459 0 0 0 chr6 53459933 53459984 -96057053 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 992 279 0 0 0 chr6 53459984 53460014 -96057023 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 992 1635 169 111 48 chr6 53460395 53460811 -96056226 - RMER10A LTR ERVL 0 442 1 6 992 1244 193 122 22 chr6 53461382 53461694 -96055343 + MTD LTR MaLR 77 419 0 6 992 320 226 21 31 chr6 53461900 53461996 -96055041 - MIRb SINE MIR -58 210 116 6 992 696 141 0 0 chr6 53462872 53462993 -96054044 + (TCC)n Simple_repeat Simple_repeat 3 123 0 6 992 7400 156 31 6 chr6 53463005 53464245 -96052792 - Lx5 LINE L1 -3 7047 5777 6 992 222 37 0 0 chr6 53464765 53464792 -96052245 + (AGGGGG)n Simple_repeat Simple_repeat 2 28 0 6 992 212 0 36 0 chr6 53464850 53464878 -96052159 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 992 819 0 0 0 chr6 53465331 53465422 -96051615 + (TTC)n Simple_repeat Simple_repeat 1 91 0 6 992 227 268 40 40 chr6 53467275 53467349 -96049688 + MIRb SINE MIR 174 247 -21 6 992 404 51 0 17 chr6 53468379 53468439 -96048598 + (TTA)n Simple_repeat Simple_repeat 2 60 0 6 992 300 302 61 30 chr6 53469203 53469302 -96047735 + PB1D10 SINE Alu 14 115 -2 6 992 191 349 72 61 chr6 53470774 53470954 -96046083 + L2a LINE L2 3224 3405 -21 6 992 22 56 0 0 chr6 53471177 53471213 -96045824 + AT_rich Low_complexity Low_complexity 1 36 0 6 992 269 268 110 0 chr6 53471228 53471320 -96045717 - MIRm SINE MIR -145 131 32 6 992 204 97 0 0 chr6 53472888 53472919 -96044118 + (CAAT)n Simple_repeat Simple_repeat 1 31 0 6 992 1528 155 206 17 chr6 53473216 53473563 -96043474 + MTC LTR MaLR 1 413 -6 6 992 323 255 71 10 chr6 53474930 53475029 -96042008 + B1F1 SINE Alu 43 147 -2 6 992 186 43 0 0 chr6 53475118 53475141 -96041896 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 6 992 446 304 56 12 chr6 53475577 53475737 -96041300 + RMER30 DNA MER1_type 8 174 -28 6 992 300 83 0 0 chr6 53476337 53476385 -96040652 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 992 1121 177 62 0 chr6 53476564 53476756 -96040281 - B3 SINE B2 -11 205 2 6 992 41 58 0 0 chr6 53476909 53476978 -96040059 + AT_rich Low_complexity Low_complexity 1 69 0 6 993 387 0 0 0 chr6 53478035 53478078 -96038959 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 993 258 280 27 0 chr6 53479217 53479292 -96037745 + GA-rich Low_complexity Low_complexity 5 81 0 6 993 726 276 105 52 chr6 53479322 53479647 -96037390 - MTE2b LTR MaLR -30 349 8 6 993 22 0 0 0 chr6 53480039 53480061 -96036976 + AT_rich Low_complexity Low_complexity 1 22 0 6 993 378 61 0 0 chr6 53480270 53480319 -96036718 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 993 821 346 55 0 chr6 53483341 53483685 -96033352 + MLT2B1 LTR ERVL 7 369 -151 6 993 281 50 32 32 chr6 53483826 53483882 -96033155 + (TTTG)n Simple_repeat Simple_repeat 3 59 0 6 993 1114 29 57 7 chr6 53483882 53484022 -96033015 - B1_Mm SINE Alu 0 147 1 6 993 260 288 0 0 chr6 53484353 53484412 -96032625 - Lx8 LINE L1 -1157 6316 6258 6 993 286 241 52 0 chr6 53484448 53484506 -96032531 + Lx8 LINE L1 6198 6258 -1215 6 993 870 224 41 10 chr6 53484884 53485078 -96031959 + B3 SINE B2 2 201 -15 6 993 834 140 0 0 chr6 53485086 53485265 -96031772 + (CATA)n Simple_repeat Simple_repeat 2 180 0 6 993 195 42 0 0 chr6 53485369 53485393 -96031644 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 6 993 512 15 0 15 chr6 53485841 53485907 -96031130 + (TTA)n Simple_repeat Simple_repeat 2 66 0 6 993 207 0 0 0 chr6 53485916 53485939 -96031098 + (TGG)n Simple_repeat Simple_repeat 1 23 0 6 993 280 290 11 0 chr6 53486234 53486327 -96030710 + MER58B DNA MER1_type 115 208 -133 6 993 251 262 153 10 chr6 53488544 53488652 -96028385 + MIRb SINE MIR 27 151 -117 6 993 333 0 0 0 chr6 53488979 53489016 -96028021 + (A)n Simple_repeat Simple_repeat 1 37 0 6 993 189 0 0 0 chr6 53490067 53490088 -96026949 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 993 387 0 0 0 chr6 53490088 53490131 -96026906 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 993 356 97 0 16 chr6 53491186 53491249 -96025788 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 993 263 353 26 8 chr6 53491302 53491419 -96025618 - B4 SINE B4 -64 228 110 6 993 384 302 11 82 chr6 53491510 53491684 -96025353 + B3A SINE B2 6 166 -32 6 993 420 37 0 0 chr6 53491684 53491738 -96025299 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 993 202 56 27 27 chr6 53491753 53491790 -96025247 + (TAA)n Simple_repeat Simple_repeat 1 37 0 6 993 22 0 0 0 chr6 53492279 53492301 -96024736 + AT_rich Low_complexity Low_complexity 1 22 0 6 993 333 68 0 0 chr6 53492435 53492479 -96024558 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 993 2012 257 117 7 chr6 53492479 53493086 -96023951 - Lx9 LINE L1 -181 7463 6790 6 993 632 326 36 25 chr6 53494467 53494741 -96022296 - B4A SINE B4 -14 278 2 6 993 2052 145 52 72 chr6 53494833 53495235 -96021802 - ORR1B1 LTR MaLR 0 394 1 6 993 195 42 0 0 chr6 53495471 53495495 -96021542 + (CAGG)n Simple_repeat Simple_repeat 1 24 0 6 993 208 139 0 0 chr6 53495890 53495926 -96021111 + (T)n Simple_repeat Simple_repeat 1 36 0 6 993 522 0 0 0 chr6 53496839 53496897 -96020140 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 993 293 274 23 46 chr6 53497321 53497451 -96019586 + HAL1 LINE L1 1483 1609 -898 6 993 257 310 92 8 chr6 53497451 53497581 -96019456 - L2a LINE L2 -5 3421 3281 6 993 867 70 0 0 chr6 53497687 53497802 -96019235 + (GGAA)n Simple_repeat Simple_repeat 1 115 0 6 993 188 125 0 48 chr6 53498156 53498198 -96018839 + CT-rich Low_complexity Low_complexity 4 43 0 7 993 684 0 0 0 chr6 53500646 53500722 -96016315 + (CTG)n Simple_repeat Simple_repeat 1 76 0 1 993 211 278 133 0 chr6 53502750 53502840 -96014197 + AmnSINE1 SINE SINE 1 102 -473 2 993 374 276 66 41 chr6 53504863 53504984 -96012053 - RSINE1 SINE B4 -36 129 6 3 993 587 250 37 58 chr6 53505861 53506103 -96010934 + L1MD3 LINE L1 7744 7980 -15 4 993 364 272 52 17 chr6 53506498 53506614 -96010423 + B1F SINE Alu 30 149 0 5 993 1606 183 79 42 chr6 53507220 53507573 -96009464 - RMER1B Other Other 0 1066 701 6 993 2270 282 78 66 chr6 53507781 53508305 -96008732 - Lx8 LINE L1 -826 6647 6127 7 993 974 118 94 6 chr6 53508305 53508475 -96008562 - B2_Mm2 SINE B2 -10 185 1 8 993 2270 282 78 66 chr6 53508475 53508950 -96008087 - Lx8 LINE L1 -1347 6126 5636 7 993 229 327 0 30 chr6 53509124 53509354 -96007683 + (CATA)n Simple_repeat Simple_repeat 1 222 0 9 993 234 284 71 13 chr6 53509897 53510058 -96006979 + MIRb SINE MIR 68 245 -23 1 993 587 244 138 56 chr6 53511411 53511680 -96005357 + B4A SINE B4 2 292 0 1 993 402 214 0 0 chr6 53511687 53511776 -96005261 + (CATA)n Simple_repeat Simple_repeat 4 92 0 1 993 245 248 126 36 chr6 53511779 53511946 -96005091 - RLTR21 LTR ERVK -319 1253 1072 1 993 389 279 100 6 chr6 53512869 53513049 -96003988 + L2 LINE L2 2396 2592 -827 1 993 496 264 70 21 chr6 53513258 53513444 -96003593 + B3 SINE B2 9 203 -13 1 993 278 290 10 10 chr6 53513444 53513545 -96003492 + (CA)n Simple_repeat Simple_repeat 1 101 0 1 993 410 294 10 0 chr6 53514301 53514403 -96002634 + PB1D10 SINE Alu 7 109 -8 1 993 180 0 0 0 chr6 53515681 53515701 -96001336 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 993 449 250 24 40 chr6 53515702 53515827 -96001210 - PB1 SINE Alu -4 123 1 1 993 1028 132 11 0 chr6 53516027 53516201 -96000836 + (TCTCC)n Simple_repeat Simple_repeat 5 180 0 2 993 750 101 0 0 chr6 53516201 53516310 -96000727 + (TTC)n Simple_repeat Simple_repeat 2 110 0 2 993 387 0 0 0 chr6 53516408 53516451 -96000586 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 993 351 0 0 0 chr6 53517378 53517417 -95999620 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 993 351 328 31 16 chr6 53517490 53517617 -95999420 + MER2 DNA MER2_type 216 344 -1 2 993 459 0 0 0 chr6 53521273 53521324 -95995713 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 993 645 135 0 51 chr6 53521324 53521336 -95995701 - B1_Mur3 SINE Alu -9 140 134 2 993 3013 50 53 3 chr6 53521336 53521713 -95995324 - MTA_Mm LTR MaLR 0 396 1 2 993 645 135 0 51 chr6 53521713 53521817 -95995220 - B1_Mur3 SINE Alu -16 133 30 2 993 324 0 0 0 chr6 53522099 53522135 -95994902 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 993 239 133 22 0 chr6 53522871 53522916 -95994121 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 2 993 223 282 0 25 chr6 53523181 53523261 -95993776 + GA-rich Low_complexity Low_complexity 3 80 0 3 993 180 0 0 0 chr6 53523630 53523650 -95993387 + (T)n Simple_repeat Simple_repeat 1 20 0 3 993 180 0 0 0 chr6 53523700 53523720 -95993317 + (G)n Simple_repeat Simple_repeat 1 20 0 3 993 390 42 0 0 chr6 53525157 53525205 -95991832 + (TATG)n Simple_repeat Simple_repeat 2 49 0 3 993 204 40 0 0 chr6 53525873 53525898 -95991139 + (TTA)n Simple_repeat Simple_repeat 1 25 0 3 993 272 354 30 18 chr6 53526920 53527084 -95989953 + MIRb SINE MIR 21 186 -82 3 993 288 193 0 34 chr6 53527648 53527707 -95989330 + tRNA-Ala-GCY_ tRNA tRNA 11 67 -8 3 993 254 29 29 0 chr6 53527709 53527744 -95989293 + (CAAT)n Simple_repeat Simple_repeat 1 36 0 3 993 224 271 17 0 chr6 53528863 53528922 -95988115 + MIRb SINE MIR 51 110 -158 3 993 291 140 0 0 chr6 53528972 53529022 -95988015 + (CCA)n Simple_repeat Simple_repeat 1 50 0 3 993 632 234 41 31 chr6 53529783 53529977 -95987060 + B3A SINE B2 2 197 -1 4 993 477 0 0 0 chr6 53531347 53531400 -95985637 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 993 673 257 87 5 chr6 53531462 53531681 -95985356 + MER2 DNA MER2_type 58 294 -51 4 993 482 68 45 0 chr6 53531738 53531826 -95985211 + (CATA)n Simple_repeat Simple_repeat 1 92 0 4 993 288 0 0 0 chr6 53532528 53532560 -95984477 + (CAGG)n Simple_repeat Simple_repeat 3 34 0 4 993 593 27 13 0 chr6 53532701 53532776 -95984261 + (GA)n Simple_repeat Simple_repeat 2 77 0 4 993 1084 160 0 49 chr6 53532779 53533002 -95984035 - MER121 Unknown Unknown -169 243 32 4 993 273 98 0 0 chr6 53533863 53533904 -95983133 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 4 993 21 36 0 0 chr6 53536252 53536280 -95980757 + AT_rich Low_complexity Low_complexity 1 28 0 4 993 237 65 0 0 chr6 53536787 53536818 -95980219 + (A)n Simple_repeat Simple_repeat 1 31 0 4 993 293 366 72 21 chr6 53537223 53537427 -95979610 - L2b LINE L2 -171 3216 3001 5 993 183 320 173 16 chr6 53537608 53537735 -95979302 - L2b LINE L2 -644 2775 2629 5 993 975 174 0 0 chr6 53537945 53538277 -95978760 + (TGGA)n Simple_repeat Simple_repeat 1 332 0 5 993 581 302 68 20 chr6 53538322 53538572 -95978465 + Tigger5 DNA MER2_type 2137 2398 -8 5 993 655 299 137 67 chr6 53538614 53539016 -95978021 - MLT2B1 LTR ERVL -72 448 19 5 993 202 254 27 27 chr6 53539661 53539734 -95977303 - MIRc SINE MIR -123 145 73 5 993 25 0 0 0 chr6 53540409 53540434 -95976603 + AT_rich Low_complexity Low_complexity 1 25 0 5 993 397 255 49 0 chr6 53540468 53540570 -95976467 - PB1D7 SINE Alu -7 113 7 5 993 339 263 30 10 chr6 53540657 53540757 -95976280 + RSINE1 SINE B4 2 103 -62 5 993 680 167 63 28 chr6 53542806 53542948 -95974089 + B1_Mur2 SINE Alu 3 149 0 5 993 236 157 58 19 chr6 53543043 53543067 -95973970 + (AATAG)n Simple_repeat Simple_repeat 4 30 0 5 993 1016 146 6 0 chr6 53543067 53543245 -95973792 + (CAGAA)n Simple_repeat Simple_repeat 2 180 0 6 993 236 157 58 19 chr6 53543245 53543272 -95973765 + (AATAG)n Simple_repeat Simple_repeat 2 28 0 6 993 25 0 0 0 chr6 53544237 53544262 -95972775 + AT_rich Low_complexity Low_complexity 1 25 0 6 993 393 22 0 0 chr6 53546101 53546147 -95970890 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 993 29 0 0 0 chr6 53546490 53546519 -95970518 + AT_rich Low_complexity Low_complexity 1 29 0 6 993 1387 196 171 11 chr6 53546870 53547221 -95969816 + MTD LTR MaLR 13 419 0 6 993 234 306 82 8 chr6 53547358 53547480 -95969557 + MTE2a LTR MaLR 1 131 -248 6 993 1348 242 48 37 chr6 53547584 53547627 -95969410 - MTC-int LTR MaLR -819 439 387 6 993 189 0 0 0 chr6 53547627 53547648 -95969389 + (TGG)n Simple_repeat Simple_repeat 2 22 0 6 993 1348 242 48 37 chr6 53547648 53548038 -95968999 - MTC-int LTR MaLR -872 386 1 6 993 1118 279 98 8 chr6 53548064 53548433 -95968604 + MTD LTR MaLR 18 419 0 6 993 234 348 9 0 chr6 53548443 53548558 -95968479 - MIR SINE MIR -146 116 1 7 993 991 94 0 32 chr6 53548881 53549067 -95967970 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 993 935 215 49 0 chr6 53551955 53552160 -95964877 - B3 SINE B2 0 216 2 7 993 1225 152 66 5 chr6 53552332 53552543 -95964494 - URR1B DNA MER1_type -1 224 1 7 993 252 86 0 0 chr6 53553492 53553527 -95963510 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 7 993 674 291 86 30 chr6 53554874 53555178 -95961859 + MER2 DNA MER2_type 2 322 -23 7 993 180 321 0 0 chr6 53555491 53555544 -95961493 - MIR SINE MIR -196 66 14 7 993 307 324 102 6 chr6 53555541 53555718 -95961319 - MIRb SINE MIR -41 227 34 7 993 253 197 194 14 chr6 53555724 53555796 -95961241 - PB1D10 SINE Alu -4 113 29 7 993 3159 104 130 0 chr6 53556590 53557081 -95959956 + Lx3_Mus LINE L1 6432 6986 -23 7 993 216 0 0 0 chr6 53557081 53557105 -95959932 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 8 993 441 282 152 6 chr6 53557268 53557439 -95959598 + MER20 DNA MER1_type 16 211 -8 8 993 360 186 35 0 chr6 53558550 53558636 -95958401 + L1MB3 LINE L1 6092 6180 -3 8 993 454 258 96 29 chr6 53559744 53559880 -95957157 - B1F2 SINE Alu -4 145 1 8 993 24 0 0 0 chr6 53559940 53559964 -95957073 + AT_rich Low_complexity Low_complexity 1 24 0 8 993 264 149 0 0 chr6 53560928 53560975 -95956062 + (TTG)n Simple_repeat Simple_repeat 2 48 0 8 993 255 79 0 0 chr6 53563189 53563227 -95953810 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 8 993 207 341 0 42 chr6 53563577 53563672 -95953365 + GA-rich Low_complexity Low_complexity 5 95 0 8 993 348 297 50 8 chr6 53563853 53563972 -95953065 - B1F SINE Alu 0 149 26 8 993 632 259 25 41 chr6 53564407 53564604 -95952433 - ID_B1 SINE B4 -1 223 30 8 993 180 0 0 0 chr6 53565579 53565599 -95951438 + (CAG)n Simple_repeat Simple_repeat 3 22 0 9 993 198 0 0 0 chr6 53566957 53566979 -95950058 + (TGGG)n Simple_repeat Simple_repeat 3 24 0 9 993 347 310 25 17 chr6 53567764 53567882 -95949155 + PB1D7 SINE Alu 1 119 -1 9 993 1142 184 23 42 chr6 53567890 53568105 -95948932 + B3 SINE B2 2 212 -4 9 993 274 285 101 14 chr6 53570323 53570462 -95946575 - L1M5 LINE L1 -453 5671 5521 9 993 265 231 31 0 chr6 53570670 53570735 -95946302 - ID4_ SINE ID -12 71 5 9 993 203 278 14 14 chr6 53570761 53570834 -95946203 + CT-rich Low_complexity Low_complexity 3 75 0 9 993 444 200 0 0 chr6 53570834 53570919 -95946118 - PB1 SINE Alu -8 119 35 9 993 209 335 109 40 chr6 53571791 53571965 -95945072 - MIRb SINE MIR -30 238 53 9 993 399 56 0 0 chr6 53572339 53572393 -95944644 + (TTAG)n Simple_repeat Simple_repeat 3 56 0 9 993 405 287 65 20 chr6 53574300 53574499 -95942538 - MER3 DNA MER1_type 0 209 2 1 993 956 128 6 6 chr6 53574553 53574710 -95942327 - RLTR24 LTR ERV1 -6 523 367 1 993 332 286 40 33 chr6 53576163 53576315 -95940722 + MamRep1161 DNA TcMar 4 156 -801 1 993 248 250 26 26 chr6 53576557 53576635 -95940402 - ID2 SINE ID -4 79 2 1 993 638 227 63 52 chr6 53577369 53577560 -95939477 - MLT1B LTR MaLR -28 362 170 1 993 659 158 8 0 chr6 53577575 53577702 -95939335 + CT-rich Low_complexity Low_complexity 3 130 0 1 993 690 329 8 12 chr6 53577879 53577908 -95939129 + B4A SINE B4 1 29 -263 1 993 231 36 0 0 chr6 53577908 53577936 -95939101 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1 993 690 329 8 12 chr6 53577936 53578152 -95938885 + B4A SINE B4 30 245 -47 1 993 251 36 52 52 chr6 53579978 53580036 -95937001 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 1 993 23 0 0 0 chr6 53582668 53582691 -95934346 + AT_rich Low_complexity Low_complexity 1 23 0 1 993 235 324 28 14 chr6 53582766 53582838 -95934199 - Tigger7 DNA MER2_type -5 2486 2414 1 993 1032 294 118 70 chr6 53582835 53583025 -95934012 - Tigger7 DNA MER2_type -1877 614 398 1 993 801 181 14 7 chr6 53583025 53583170 -95933867 - B1_Mus2 SINE Alu -1 146 1 1 993 1032 294 118 70 chr6 53583170 53583539 -95933498 - Tigger7 DNA MER2_type -2094 397 28 1 993 1134 89 0 0 chr6 53583634 53583780 -95933257 - B1_Mus1 SINE Alu -2 146 1 1 993 251 200 12 96 chr6 53584043 53584126 -95932911 - ORR1E LTR MaLR -255 104 29 1 993 856 269 104 25 chr6 53585200 53585593 -95931444 - L1MC4a LINE L1 0 7882 7459 1 993 360 0 0 0 chr6 53586826 53586866 -95930171 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 993 310 275 11 42 chr6 53589913 53590008 -95927029 + GA-rich Low_complexity Low_complexity 3 94 0 1 993 339 89 0 0 chr6 53590008 53590064 -95926973 + (CAGA)n Simple_repeat Simple_repeat 2 57 0 1 993 522 46 0 0 chr6 53591046 53591111 -95925926 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 993 249 57 0 0 chr6 53594348 53594383 -95922654 + (T)n Simple_repeat Simple_repeat 1 35 0 1 993 270 56 0 0 chr6 53594440 53594476 -95922561 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 993 340 222 38 31 chr6 53595611 53595722 -95921315 - B1F1 SINE Alu -6 111 3 1 993 211 273 14 43 chr6 53595660 53595729 -95921308 - B4A SINE B4 -145 147 81 1 993 25 0 0 0 chr6 53597633 53597658 -95919379 + AT_rich Low_complexity Low_complexity 1 25 0 1 993 1015 245 20 28 chr6 53598890 53599142 -95917895 - ORR1D2 LTR MaLR -120 250 1 1 993 387 73 0 0 chr6 53599327 53599382 -95917655 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 993 283 265 206 0 chr6 53599415 53599517 -95917520 - RSINE1 SINE B4 -39 126 4 1 993 213 154 0 0 chr6 53601441 53601480 -95915557 + GA-rich Low_complexity Low_complexity 3 41 0 1 993 31 44 0 0 chr6 53605646 53605691 -95911346 + AT_rich Low_complexity Low_complexity 1 45 0 1 993 664 322 84 33 chr6 53606227 53606808 -95910229 - L1MB7 LINE L1 -20 6164 5554 1 993 23 54 0 0 chr6 53607408 53607445 -95909592 + AT_rich Low_complexity Low_complexity 1 37 0 1 994 266 167 0 16 chr6 53608460 53608521 -95908516 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 994 860 260 72 58 chr6 53611637 53611915 -95905122 + B4A SINE B4 10 291 -1 1 994 360 0 0 0 chr6 53611927 53611967 -95905070 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 994 298 287 45 30 chr6 53614441 53614574 -95902463 - MTEa LTR MaLR -14 365 231 1 994 414 0 0 0 chr6 53614763 53614809 -95902228 + (TTG)n Simple_repeat Simple_repeat 2 47 0 1 994 441 0 0 0 chr6 53615098 53615147 -95901890 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 994 396 0 0 0 chr6 53615147 53615190 -95901847 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 994 296 273 65 24 chr6 53615405 53615529 -95901508 + B1F SINE Alu 2 130 -19 1 994 718 21 21 0 chr6 53615536 53615632 -95901405 + (GA)n Simple_repeat Simple_repeat 2 99 0 1 994 978 104 28 7 chr6 53616931 53617076 -95899961 - B1_Mus1 SINE Alu 0 148 1 1 994 346 316 104 66 chr6 53617456 53617639 -95899398 + Tigger5 DNA MER2_type 53 242 -2164 1 994 371 269 65 0 chr6 53617635 53617743 -95899294 + Tigger5 DNA MER2_type 2291 2405 -1 1 994 431 257 35 0 chr6 53617806 53617919 -95899118 + PB1D7 SINE Alu 2 118 -2 1 994 253 265 0 14 chr6 53617919 53617988 -95899049 + ID4 SINE ID 2 69 -14 1 994 207 0 0 0 chr6 53617999 53618022 -95899015 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 994 369 0 0 0 chr6 53618697 53618738 -95898299 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 994 556 252 0 8 chr6 53618816 53618944 -95898093 + RSINE1 SINE B4 16 142 -23 1 994 507 17 0 0 chr6 53618959 53619019 -95898018 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 994 26 30 0 0 chr6 53619416 53619449 -95897588 + AT_rich Low_complexity Low_complexity 1 33 0 1 994 1153 78 0 0 chr6 53619484 53619626 -95897411 + B1_Mus2 SINE Alu 1 142 -5 1 994 270 0 0 0 chr6 53619629 53619659 -95897378 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 994 518 124 21 0 chr6 53620894 53620991 -95896046 + (TTTC)n Simple_repeat Simple_repeat 4 102 0 1 994 234 91 0 0 chr6 53622659 53622692 -95894345 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 994 1629 216 57 5 chr6 53623593 53623980 -95893057 - MTD LTR MaLR -11 408 2 1 994 352 284 284 0 chr6 53624042 53624271 -95892766 - L1MB5 LINE L1 -1 6173 5880 1 994 342 0 0 0 chr6 53624436 53624474 -95892563 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 994 350 309 0 131 chr6 53624494 53624669 -95892368 - RSINE1 SINE B4 -13 152 1 1 994 242 141 55 123 chr6 53624861 53624934 -95892103 + MT2B LTR ERVL 166 233 -368 1 994 559 141 40 0 chr6 53624870 53624969 -95892068 + PB1D9 SINE Alu 15 117 -3 1 994 226 300 17 0 chr6 53626955 53627015 -95890022 + MIRm SINE MIR 216 276 0 1 994 189 0 0 0 chr6 53627520 53627541 -95889496 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 1 994 378 61 0 0 chr6 53628505 53628554 -95888483 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 994 272 290 0 0 chr6 53628558 53628627 -95888410 - PB1D10 SINE Alu -32 85 17 1 994 837 185 0 0 chr6 53629712 53629885 -95887152 + GA-rich Low_complexity Low_complexity 1 173 0 1 994 813 21 0 0 chr6 53629907 53630002 -95887035 + (GGGAA)n Simple_repeat Simple_repeat 2 96 0 1 994 403 259 0 37 chr6 53631034 53631198 -95885839 + C-rich Low_complexity Low_complexity 4 161 0 1 994 189 0 0 0 chr6 53632303 53632324 -95884713 + (A)n Simple_repeat Simple_repeat 1 21 0 1 994 1407 34 85 0 chr6 53632850 53632868 -95884169 - B2_Mm1a SINE B2 0 193 176 1 994 315 0 0 0 chr6 53632868 53632903 -95884134 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 994 1407 34 85 0 chr6 53632903 53633061 -95883976 - B2_Mm1a SINE B2 -18 175 3 1 994 235 226 168 62 chr6 53635743 53635856 -95881181 + MIRb SINE MIR 110 234 -34 1 994 387 0 0 0 chr6 53636353 53636396 -95880641 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 1 994 646 267 61 5 chr6 53636396 53636592 -95880445 - ID_B1 SINE B4 -14 210 4 1 994 862 217 16 26 chr6 53637171 53637365 -95879672 + B3A SINE B2 1 192 -6 1 994 384 260 19 19 chr6 53637593 53637699 -95879338 - MER20 DNA MER1_type -89 130 25 1 994 480 35 0 0 chr6 53637990 53638048 -95878989 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 994 238 308 29 22 chr6 53638621 53638780 -95878257 - MIRc SINE MIR -10 198 35 1 994 329 269 0 0 chr6 53640284 53640362 -95876675 - ID4_ SINE ID -4 79 2 1 994 539 62 0 40 chr6 53640649 53640750 -95876287 + (TA)n Simple_repeat Simple_repeat 2 98 0 1 994 851 246 35 10 chr6 53640750 53640936 -95876101 - B3 SINE B2 -22 194 2 1 994 303 85 0 0 chr6 53641417 53641464 -95875573 + (TTGG)n Simple_repeat Simple_repeat 2 48 0 1 994 610 290 7 0 chr6 53641477 53641622 -95875415 - RSINE1 SINE B4 -18 147 2 1 994 489 121 0 0 chr6 53645620 53645703 -95871334 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 994 250 259 0 47 chr6 53645994 53646079 -95870958 + A-rich Low_complexity Low_complexity 4 84 0 1 994 216 196 0 0 chr6 53648047 53648093 -95868944 + T-rich Low_complexity Low_complexity 1 46 0 1 994 309 51 0 0 chr6 53648317 53648356 -95868681 + (CCCCCA)n Simple_repeat Simple_repeat 1 39 0 1 994 25 0 0 0 chr6 53648439 53648464 -95868573 + AT_rich Low_complexity Low_complexity 1 25 0 1 994 252 0 0 0 chr6 53649800 53649828 -95867209 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1 994 681 200 188 6 chr6 53651954 53652130 -95864907 + B3 SINE B2 2 209 -7 1 994 225 227 38 51 chr6 53652432 53652511 -95864526 - Lx8 LINE L1 -28 7445 7368 1 994 204 216 0 0 chr6 53652560 53652597 -95864440 + GA-rich Low_complexity Low_complexity 3 39 0 1 994 306 0 0 0 chr6 53652601 53652635 -95864402 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 994 323 260 28 57 chr6 53652668 53652774 -95864263 + Lx8 LINE L1 7157 7259 -214 1 994 308 241 0 0 chr6 53654255 53654313 -95862724 + ID4 SINE ID 13 70 -13 1 994 202 128 26 0 chr6 53655210 53655249 -95861788 + (CAA)n Simple_repeat Simple_repeat 3 42 0 1 994 197 205 0 0 chr6 53655318 53655357 -95861680 + MIR SINE MIR 36 74 -188 1 994 335 278 221 44 chr6 53655509 53655803 -95861234 + ORR1E LTR MaLR 8 353 -6 1 994 195 365 0 34 chr6 53656869 53656957 -95860080 + MER5A DNA MER1_type 31 115 -74 1 994 378 0 0 0 chr6 53656973 53657015 -95860022 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 994 396 0 0 0 chr6 53657332 53657376 -95859661 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 994 201 74 0 0 chr6 53657712 53657739 -95859298 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 1 994 325 230 136 42 chr6 53657877 53657995 -95859042 + MER5A DNA MER1_type 1 129 -60 2 994 601 300 84 32 chr6 53658377 53658628 -95858409 + B4A SINE B4 2 265 -27 2 994 270 0 0 0 chr6 53659502 53659532 -95857505 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 994 252 86 0 0 chr6 53661492 53661527 -95855510 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 2 994 276 77 0 0 chr6 53661527 53661566 -95855471 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 994 288 269 0 55 chr6 53661830 53662011 -95855026 + (CATG)n Simple_repeat Simple_repeat 2 172 0 2 994 228 163 0 0 chr6 53663068 53663111 -95853926 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 2 994 719 52 10 0 chr6 53663992 53664088 -95852949 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 2 994 1184 295 41 5 chr6 53666386 53666802 -95850235 - RCHARR1 DNA MER1_type -543 431 1 2 994 308 189 73 8 chr6 53666833 53666956 -95850081 + (TA)n Simple_repeat Simple_repeat 1 131 0 2 994 668 221 79 20 chr6 53667133 53667336 -95849701 + B3 SINE B2 1 215 -1 2 994 870 168 5 104 chr6 53667366 53667578 -95849459 + B2_Mm2 SINE B2 2 192 -3 2 994 315 306 71 15 chr6 53672136 53672332 -95844705 + MLT2C1 LTR ERVL 13 219 -178 2 994 409 333 15 5 chr6 53674209 53674411 -95842626 + L1MA7 LINE L1 6086 6289 -2 2 994 21 0 0 0 chr6 53675404 53675425 -95841612 + AT_rich Low_complexity Low_complexity 1 21 0 2 994 313 300 49 24 chr6 53675512 53675635 -95841402 - B4A SINE B4 -156 136 11 2 994 3139 73 0 5 chr6 53675907 53676305 -95840732 + MTA_Mm LTR MaLR 1 396 0 2 994 468 0 0 0 chr6 53676583 53676635 -95840402 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 994 716 0 12 0 chr6 53676635 53676718 -95840319 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 994 2327 191 44 14 chr6 53676759 53677258 -95839779 + RMER5 LTR ERV1 13 526 -8 2 994 665 237 128 17 chr6 53677282 53677509 -95839528 + MTD LTR MaLR 158 399 -20 2 994 561 259 37 0 chr6 53677526 53677661 -95839376 - B1F1 SINE Alu -8 141 2 2 994 255 311 47 37 chr6 53678219 53678326 -95838711 + PB1D10 SINE Alu 9 116 -1 2 994 1458 222 117 5 chr6 53679088 53679463 -95837574 + MTD LTR MaLR 3 419 0 2 994 279 304 112 26 chr6 53679775 53679927 -95837110 - L2 LINE L2 -1063 2356 2192 2 994 316 285 7 81 chr6 53680412 53680561 -95836476 + L1MD3 LINE L1 7792 7929 -66 2 994 207 0 0 0 chr6 53681519 53681542 -95835495 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 2 994 180 176 0 0 chr6 53681542 53681576 -95835461 + CT-rich Low_complexity Low_complexity 2 35 0 2 994 611 95 0 21 chr6 53681568 53681665 -95835372 + (TTTCC)n Simple_repeat Simple_repeat 2 96 0 2 994 270 236 72 45 chr6 53681665 53681776 -95835261 - PB1D10 SINE Alu 0 117 4 2 994 686 222 0 0 chr6 53681953 53682079 -95834958 - B3 SINE B2 -86 130 5 2 994 4365 50 43 2 chr6 53682176 53682714 -95834323 - LTRIS2 LTR ERV1 0 564 5 2 994 351 0 0 0 chr6 53683703 53683742 -95833295 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 994 744 12 0 0 chr6 53685029 53685114 -95831923 + (GA)n Simple_repeat Simple_repeat 1 85 0 2 994 452 56 66 22 chr6 53685318 53685409 -95831628 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 2 994 519 160 0 2 chr6 53686146 53686240 -95830797 + B1_Mur2 SINE Alu 45 136 -13 2 994 270 0 0 0 chr6 53686240 53686270 -95830767 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2 994 327 288 76 70 chr6 53686304 53686420 -95830617 - L1MD2 LINE L1 -14 6345 6227 2 994 388 293 30 69 chr6 53686420 53686622 -95830415 + B3A SINE B2 2 195 -3 2 994 327 288 76 70 chr6 53686622 53686834 -95830203 - L1MD2 LINE L1 -133 6226 6015 2 994 21 0 0 0 chr6 53687153 53687174 -95829863 + AT_rich Low_complexity Low_complexity 1 21 0 2 994 5495 62 16 34 chr6 53687221 53687960 -95829077 + L1Md_F2 LINE L1 5845 6570 -12 2 994 349 351 44 7 chr6 53689386 53689521 -95827516 + LTR16A LTR ERVL 45 184 -267 2 994 1241 54 0 5 chr6 53689891 53690113 -95826924 + (CA)n Simple_repeat Simple_repeat 1 221 0 2 994 426 300 64 41 chr6 53690174 53690393 -95826644 + MER58A DNA MER1_type 1 224 0 2 994 402 21 0 0 chr6 53690463 53690510 -95826527 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2 994 3586 114 11 29 chr6 53690510 53691071 -95825966 - Lx3C LINE L1 -13 6963 6413 2 994 324 0 0 0 chr6 53692945 53692981 -95824056 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 994 375 23 0 0 chr6 53692981 53693024 -95824013 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 994 486 234 7 47 chr6 53693148 53693296 -95823741 - B4A SINE B4 -150 142 1 2 994 225 324 0 0 chr6 53694819 53694890 -95822147 + ID4 SINE ID 2 72 -11 2 994 744 229 47 6 chr6 53695333 53695504 -95821533 + B3A SINE B2 5 182 -16 2 994 25 51 0 0 chr6 53695511 53695550 -95821487 + AT_rich Low_complexity Low_complexity 1 39 0 2 994 583 193 0 26 chr6 53695563 53695717 -95821320 + (TA)n Simple_repeat Simple_repeat 1 150 0 2 994 324 0 0 0 chr6 53695717 53695753 -95821284 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 994 892 30 442 0 chr6 53695753 53695925 -95821112 - ORR1A1 LTR MaLR -98 248 1 2 994 22 70 0 0 chr6 53696020 53696063 -95820974 + AT_rich Low_complexity Low_complexity 1 43 0 2 994 459 0 0 0 chr6 53696881 53696932 -95820105 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 994 288 0 0 0 chr6 53696932 53696963 -95820074 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 994 692 258 132 28 chr6 53697176 53697427 -95819610 - B4 SINE B4 -3 289 13 2 994 700 219 173 15 chr6 53698010 53698346 -95818691 + MTD LTR MaLR 1 404 -15 2 994 623 263 37 37 chr6 53698358 53698629 -95818408 - L1MEc LINE L1 -2317 3996 3726 2 994 1114 304 89 29 chr6 53698840 53699809 -95817228 - L1MEc LINE L1 -3095 3224 2201 2 994 23 68 0 0 chr6 53700112 53700156 -95816881 + AT_rich Low_complexity Low_complexity 1 44 0 2 994 725 254 156 21 chr6 53700342 53700579 -95816458 - MER2 DNA MER2_type -69 276 8 2 994 456 104 0 0 chr6 53701040 53701107 -95815930 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 994 230 78 18 89 chr6 53701124 53701180 -95815857 + CT-rich Low_complexity Low_complexity 2 53 0 2 994 276 250 0 0 chr6 53701891 53701959 -95815078 + L1M4 LINE L1 4629 4696 -1450 2 994 949 155 0 0 chr6 53702296 53702444 -95814593 + B1_Mur4 SINE Alu 2 149 -1 2 994 421 324 60 79 chr6 53702784 53703095 -95813942 + L1ME3 LINE L1 5520 5824 -338 2 994 1686 21 0 0 chr6 53703095 53703282 -95813755 + B2_Mm1a SINE B2 1 187 -6 2 994 421 324 60 79 chr6 53703282 53703453 -95813584 + L1ME3 LINE L1 5825 5993 -169 2 994 449 252 42 66 chr6 53703462 53703628 -95813409 - RLTR14 LTR ERV1 0 382 221 2 994 937 295 71 19 chr6 53703842 53704167 -95812870 - RLTR14-int LTR ERV1 0 5317 4976 2 994 227 100 0 57 chr6 53704325 53704378 -95812659 + T-rich Low_complexity Low_complexity 1 50 0 2 994 530 286 44 33 chr6 53706765 53706946 -95810091 + MER2B DNA MER2_type 111 293 -43 2 994 915 236 11 0 chr6 53707163 53707341 -95809696 + B3A SINE B2 1 180 -18 2 994 424 237 155 61 chr6 53707574 53707722 -95809315 + MLT1B LTR MaLR 1 162 -228 2 994 207 100 0 0 chr6 53707897 53707927 -95809110 + (CGTG)n Simple_repeat Simple_repeat 1 30 0 2 994 315 0 0 0 chr6 53709001 53709036 -95808001 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 994 436 74 0 36 chr6 53709036 53709119 -95807918 + (CAGAGA)n Simple_repeat Simple_repeat 3 83 0 2 994 279 127 31 16 chr6 53710260 53710324 -95806713 + CT-rich Low_complexity Low_complexity 2 66 0 2 994 264 30 0 0 chr6 53711831 53711864 -95805173 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 994 213 94 0 0 chr6 53711873 53711905 -95805132 + (CACCAT)n Simple_repeat Simple_repeat 4 35 0 2 994 245 171 66 0 chr6 53711943 53711968 -95805069 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 994 299 85 21 0 chr6 53711968 53712015 -95805022 + (CCA)n Simple_repeat Simple_repeat 3 50 0 2 994 245 171 66 0 chr6 53712015 53712065 -95804972 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 994 1312 160 0 34 chr6 53713987 53714220 -95802817 - URR1B DNA MER1_type 0 225 1 2 994 232 358 0 21 chr6 53714648 53714745 -95802292 + MLT1E1 LTR MaLR 8 102 -458 2 994 386 296 58 82 chr6 53714849 53715094 -95801943 + MLT1E1 LTR MaLR 338 610 -44 2 994 234 0 0 0 chr6 53715269 53715295 -95801742 + (A)n Simple_repeat Simple_repeat 1 26 0 2 994 369 316 179 28 chr6 53715329 53715580 -95801457 + B4 SINE B4 2 290 -2 2 994 763 242 6 0 chr6 53716297 53716458 -95800579 + B3A SINE B2 1 162 -36 2 994 21 0 0 0 chr6 53717339 53717360 -95799677 + AT_rich Low_complexity Low_complexity 1 21 0 2 994 3808 281 93 35 chr6 53717450 53718988 -95798049 + Lx8 LINE L1 5803 7464 -9 2 994 257 244 211 0 chr6 53719504 53719594 -95797443 - Lx8 LINE L1 -381 7092 6984 2 994 837 182 0 0 chr6 53719598 53719834 -95797203 + (TG)n Simple_repeat Simple_repeat 1 236 0 2 994 718 222 39 33 chr6 53719834 53720016 -95797021 - Lx8 LINE L1 -512 6961 6779 2 994 1113 287 85 3 chr6 53720023 53720352 -95796685 + Lx8 LINE L1 7110 7465 -8 2 994 226 340 30 10 chr6 53720488 53720589 -95796448 + L1M6 LINE L1 86 188 -6308 2 994 198 0 0 0 chr6 53720652 53720674 -95796363 + (CAAAT)n Simple_repeat Simple_repeat 1 22 0 2 994 326 328 50 17 chr6 53721194 53721374 -95795663 + L1ME3 LINE L1 5568 5753 -420 2 994 272 261 45 30 chr6 53722002 53722136 -95794901 + L1ME3 LINE L1 5946 6081 -81 2 994 301 104 167 0 chr6 53722198 53722246 -95794791 + Lx6 LINE L1 276 331 -7397 2 994 9779 80 8 3 chr6 53722244 53722849 -95794188 + Lx3_Mus LINE L1 5349 5922 -1087 2 994 954 26 0 0 chr6 53722849 53722962 -95794075 + (GGGAA)n Simple_repeat Simple_repeat 3 115 0 2 994 1179 117 0 0 chr6 53722963 53723143 -95793894 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 2 994 9779 88 30 29 chr6 53723143 53724183 -95792854 + Lx3_Mus LINE L1 5923 6997 -12 2 994 189 0 0 0 chr6 53724185 53724206 -95792831 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 3 994 3369 147 19 2 chr6 53724207 53724801 -95792236 + Lx6 LINE L1 3198 3801 -2079 2 994 7335 176 28 26 chr6 53724801 53727006 -95790031 + Lx6 LINE L1 4520 6730 -730 2 994 1171 218 180 38 chr6 53729099 53729308 -95787729 - MTD LTR MaLR 0 419 162 3 994 432 0 0 0 chr6 53729308 53729356 -95787681 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 994 1171 218 180 38 chr6 53729356 53729513 -95787524 - MTD LTR MaLR -258 161 2 3 994 477 0 0 0 chr6 53730634 53730687 -95786350 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 994 347 223 54 32 chr6 53731586 53731690 -95785347 - PB1D10 SINE Alu -36 113 8 3 994 247 289 65 93 chr6 53731604 53731711 -95785326 - ID_B1 SINE B4 -48 176 73 3 994 1810 264 84 40 chr6 53731925 53732533 -95784504 + Lx8 LINE L1 6398 7032 -441 3 994 288 267 128 37 chr6 53732829 53732938 -95784099 + PB1D9 SINE Alu 1 119 -1 3 994 383 311 66 116 chr6 53734319 53734452 -95782585 + Arthur1C DNA Tip100 2 144 -219 3 994 884 202 77 5 chr6 53734452 53734646 -95782391 + B3 SINE B2 1 208 -8 3 994 383 311 66 116 chr6 53734646 53734770 -95782267 + Arthur1C DNA Tip100 145 246 -117 3 994 1193 62 7 0 chr6 53734785 53734931 -95782106 - B1_Mus2 SINE Alu 0 147 1 3 994 1008 125 7 3 chr6 53735375 53735673 -95781364 + (TG)n Simple_repeat Simple_repeat 1 298 0 3 994 306 0 0 0 chr6 53735823 53735857 -95781180 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 3 994 464 292 167 37 chr6 53736051 53736296 -95780741 + B4 SINE B4 1 277 -15 3 994 180 77 0 0 chr6 53736319 53736345 -95780692 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 994 351 0 0 0 chr6 53736345 53736383 -95780654 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 994 242 252 49 98 chr6 53736383 53736506 -95780531 + L1MA6 LINE L1 6151 6267 -33 3 994 4505 12 2 0 chr6 53736508 53737000 -95780037 - MT2_Mm LTR ERVL 0 493 1 3 994 319 0 0 0 chr6 53737000 53737038 -95779999 - MERVL-int LTR ERVL 0 5485 5448 3 994 403 167 46 35 chr6 53737038 53737125 -95779912 - ORR1A3-int LTR MaLR -1323 640 553 3 124 41492 16 14 0 chr6 53737125 53742412 -95774625 - MERVL-int LTR ERVL -125 5360 1 3 995 4505 12 2 0 chr6 53742412 53742904 -95774133 - MT2_Mm LTR ERVL 0 493 1 3 995 387 147 12 58 chr6 53743856 53744029 -95773008 + (TA)n Simple_repeat Simple_repeat 1 165 0 3 995 670 133 8 0 chr6 53744148 53744252 -95772785 + Lx LINE L1 6531 6635 -19 3 995 180 0 0 0 chr6 53744252 53744272 -95772765 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 995 670 133 8 0 chr6 53744272 53744287 -95772750 + Lx LINE L1 6636 6650 -4 3 995 243 0 0 0 chr6 53744680 53744707 -95772330 + (T)n Simple_repeat Simple_repeat 1 27 0 3 995 2316 185 40 5 chr6 53746051 53746474 -95770563 - MT2A LTR ERVL -95 438 1 3 995 636 50 0 0 chr6 53747164 53747244 -95769793 + (TTAGGG)n Simple_repeat Simple_repeat 4 83 0 3 995 636 260 31 69 chr6 53747506 53747778 -95769259 - MLT1A1 LTR MaLR 0 408 95 3 995 433 241 113 20 chr6 53748612 53748807 -95768230 - MER45B DNA Tip100 -89 951 739 3 995 1047 251 53 124 chr6 53748814 53749264 -95767773 - RLTR23 LTR ERV1 -5 425 8 3 995 288 137 0 0 chr6 53749333 53749384 -95767653 + (TCC)n Simple_repeat Simple_repeat 2 52 0 3 995 1532 264 79 16 chr6 53749385 53749813 -95767224 - Lx5 LINE L1 -21 7029 6575 3 995 1024 251 0 106 chr6 53749984 53750287 -95766750 + RLTR11B LTR ERVK 4 274 -179 3 995 539 233 53 64 chr6 53750304 53750492 -95766545 + RLTR11B LTR ERVK 246 431 -22 3 995 236 255 276 0 chr6 53750535 53750633 -95766404 - L1M5 LINE L1 -456 5784 5660 3 995 504 296 30 17 chr6 53750764 53750998 -95766039 + L1MD3 LINE L1 7750 7986 -9 3 995 400 278 131 34 chr6 53751771 53751946 -95765091 + LTR84b LTR ERVL 502 693 -68 3 995 213 39 0 0 chr6 53752903 53752929 -95764108 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 995 318 50 0 0 chr6 53754501 53754541 -95762496 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 3 995 195 139 0 0 chr6 53754541 53754577 -95762460 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 3 995 450 65 0 0 chr6 53754581 53754643 -95762394 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 3 995 899 198 258 14 chr6 53755001 53755165 -95761872 + Lx9 LINE L1 7288 7476 -168 3 995 207 0 0 0 chr6 53755165 53755188 -95761849 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 995 899 198 258 14 chr6 53755188 53755219 -95761818 + Lx9 LINE L1 7477 7553 -91 3 995 2152 175 104 38 chr6 53755219 53755652 -95761385 + MT2A LTR ERVL 1 478 -55 3 995 321 26 0 0 chr6 53755652 53755690 -95761347 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 995 2152 175 104 38 chr6 53755690 53755756 -95761281 + MT2A LTR ERVL 479 533 0 3 995 899 198 258 14 chr6 53755756 53755846 -95761191 + Lx9 LINE L1 7554 7643 -1 3 995 333 0 0 0 chr6 53756127 53756164 -95760873 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 995 626 304 77 23 chr6 53756214 53756473 -95760564 - B4A SINE B4 -18 274 2 3 995 442 274 86 36 chr6 53756907 53757047 -95759990 + MLT1C LTR MaLR 4 150 -317 3 995 520 206 14 0 chr6 53757633 53757774 -95759263 + CT-rich Low_complexity Low_complexity 2 144 0 3 995 788 264 19 9 chr6 53758423 53758637 -95758400 - ID_B1 SINE B4 -8 216 1 3 995 21 0 0 0 chr6 53760065 53760086 -95756951 + AT_rich Low_complexity Low_complexity 1 21 0 3 995 377 326 198 23 chr6 53760241 53760590 -95756447 + L1MCc LINE L1 1112 1521 -4902 3 995 3196 61 5 8 chr6 53760775 53761172 -95755865 - MTA_Mm LTR MaLR 0 396 1 3 995 479 17 0 16 chr6 53761346 53761407 -95755630 + (TTCC)n Simple_repeat Simple_repeat 2 61 0 3 995 180 0 0 0 chr6 53761431 53761451 -95755586 + (TTG)n Simple_repeat Simple_repeat 1 20 0 3 995 431 257 5 30 chr6 53761457 53761558 -95755479 - B1F SINE Alu -32 117 14 3 995 230 248 60 113 chr6 53761464 53761598 -95755439 + YREP_Mm Unknown Unknown 211 336 -1476 3 995 583 276 45 6 chr6 53761598 53761755 -95755282 - MER58B DNA MER1_type -1 340 178 3 995 297 273 0 0 chr6 53761862 53761990 -95755047 + (TG)n Simple_repeat Simple_repeat 2 129 0 3 995 291 261 0 0 chr6 53762032 53762166 -95754871 + (TG)n Simple_repeat Simple_repeat 2 135 0 3 995 2159 139 12 0 chr6 53763567 53763890 -95753147 + ORR1A2 LTR MaLR 1 327 0 3 995 1042 83 20 7 chr6 53764657 53764803 -95752234 + B2_Mm2 SINE B2 1 148 -47 3 995 342 0 0 0 chr6 53764804 53764842 -95752195 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 995 24 32 0 0 chr6 53766441 53766472 -95750565 + AT_rich Low_complexity Low_complexity 1 31 0 3 995 210 37 0 0 chr6 53766540 53766567 -95750470 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 995 297 0 0 0 chr6 53766918 53766951 -95750086 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 995 378 0 0 0 chr6 53772706 53772748 -95744289 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 995 279 0 0 0 chr6 53772748 53772778 -95744259 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 995 216 0 0 0 chr6 53773061 53773085 -95743952 + (A)n Simple_repeat Simple_repeat 1 24 0 3 995 1964 139 18 76 chr6 53773676 53774057 -95742980 - RLTR15 LTR ERVK 0 359 1 3 995 269 343 35 0 chr6 53774324 53774407 -95742630 + Zaphod DNA Tip100 1 89 -1594 3 995 355 257 185 71 chr6 53776163 53776347 -95740690 - B3 SINE B2 -11 205 1 3 995 186 379 11 33 chr6 53776420 53776510 -95740527 - MIRb SINE MIR -46 222 135 3 995 6273 127 8 15 chr6 53776532 53776679 -95740358 - L1_Mur2 LINE L1 -816 5061 4910 3 995 279 0 0 0 chr6 53776679 53776710 -95740327 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 3 995 6273 127 8 15 chr6 53776710 53777548 -95739489 - L1_Mur2 LINE L1 -968 4909 4083 3 995 5224 163 50 29 chr6 53777548 53779062 -95737975 + Lx5 LINE L1 5074 6692 -308 3 995 390 274 84 84 chr6 53780071 53780402 -95736635 + ORR1E LTR MaLR 9 339 -40 3 995 613 275 7 0 chr6 53781042 53781180 -95735857 + RSINE1 SINE B4 3 141 -24 3 995 225 94 0 0 chr6 53781180 53781212 -95735825 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 995 24 0 0 0 chr6 53782161 53782185 -95734852 + AT_rich Low_complexity Low_complexity 1 24 0 3 995 679 218 0 0 chr6 53782202 53782326 -95734711 - B1_Mur1 SINE Alu -21 128 5 3 995 190 270 116 50 chr6 53782754 53782875 -95734162 + MIRb SINE MIR 119 247 -21 3 995 326 296 0 0 chr6 53783035 53783133 -95733904 - MLT1A1 LTR MaLR -14 394 297 3 995 4552 43 2 0 chr6 53783143 53783680 -95733357 + L1Md_F2 LINE L1 6044 6581 -1 3 995 29 28 0 0 chr6 53783712 53783748 -95733289 + AT_rich Low_complexity Low_complexity 1 36 0 3 995 1191 154 69 20 chr6 53784329 53784415 -95732622 - RLTR20C LTR ERVK 0 534 436 3 995 411 21 0 0 chr6 53784415 53784463 -95732574 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 995 1191 180 41 16 chr6 53784463 53784845 -95732192 - RLTR20C LTR ERVK -99 442 16 3 995 1180 62 0 7 chr6 53784845 53784992 -95732045 + B1_Mus2 SINE Alu 2 147 0 3 995 489 110 0 0 chr6 53784992 53785074 -95731963 + (A)n Simple_repeat Simple_repeat 1 82 0 3 995 237 299 76 41 chr6 53785735 53785906 -95731131 - MIR SINE MIR -32 230 54 3 995 241 218 85 49 chr6 53786305 53786387 -95730650 - B3A SINE B2 -113 85 1 3 995 1530 223 25 47 chr6 53787085 53787122 -95729915 - MTD LTR MaLR -24 395 360 3 995 2385 125 7 73 chr6 53787122 53787544 -95729493 - ORR1B1 LTR MaLR 0 394 1 3 995 1530 223 25 47 chr6 53787544 53787910 -95729127 - MTD LTR MaLR -60 359 1 3 995 268 294 91 9 chr6 53787910 53787999 -95729038 + MLT1E2 LTR MaLR 530 627 0 3 995 3452 289 100 21 chr6 53788043 53789342 -95727695 + Lx8 LINE L1 6068 7471 -2 3 995 400 303 39 78 chr6 53789427 53789631 -95727406 - B3A SINE B2 0 198 3 3 995 540 0 0 0 chr6 53789820 53789880 -95727157 + (CTGTG)n Simple_repeat Simple_repeat 5 64 0 3 995 389 283 20 52 chr6 53791080 53791233 -95725804 - RSINE1 SINE B4 -15 150 3 3 995 402 348 79 37 chr6 53791478 53791833 -95725204 + L1ME2 LINE L1 5527 5896 -268 3 995 549 303 47 110 chr6 53791934 53792297 -95724740 - MLT1A LTR MaLR -4 370 31 3 995 198 0 0 0 chr6 53793377 53793399 -95723638 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 995 431 35 18 0 chr6 53793399 53793455 -95723582 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 995 3683 223 74 26 chr6 53794156 53794750 -95722287 - RMER1C Other Other -1 1341 731 3 995 1823 95 69 10 chr6 53794750 53795038 -95721999 + RLTR27 LTR ERVK 1 305 -4 3 995 3683 223 74 26 chr6 53795038 53795335 -95721702 - RMER1C Other Other -612 730 409 3 995 233 342 0 0 chr6 53796121 53796197 -95720840 - L1MC LINE L1 -2223 5659 5584 4 995 304 353 125 72 chr6 53796285 53796403 -95720634 + L2 LINE L2 1713 1824 -1595 4 995 207 0 0 0 chr6 53796403 53796426 -95720611 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 995 304 353 125 72 chr6 53796426 53797275 -95719762 + L2 LINE L2 1825 2731 -688 4 995 267 230 0 22 chr6 53797623 53797712 -95719325 + (TA)n Simple_repeat Simple_repeat 1 87 0 4 995 1365 203 157 112 chr6 53797862 53798301 -95718736 - MT2A LTR ERVL -74 459 1 4 995 222 366 30 0 chr6 53798875 53798976 -95718061 - MER5A DNA MER1_type -85 104 1 4 995 1899 174 39 3 chr6 53799107 53799465 -95717572 + ORR1C2 LTR MaLR 1 371 -13 4 995 213 254 17 39 chr6 53799927 53800107 -95716930 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 4 995 277 154 66 0 chr6 53799928 53800019 -95717018 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 995 508 171 7 28 chr6 53800165 53800309 -95716728 + (TA)n Simple_repeat Simple_repeat 2 142 0 4 995 309 214 28 90 chr6 53800310 53800448 -95716589 - MT2A LTR ERVL -168 433 242 4 995 240 196 98 0 chr6 53800489 53800540 -95716497 + MTEb LTR MaLR 196 251 -128 4 995 290 247 13 0 chr6 53800552 53800629 -95716408 + MTEb LTR MaLR 302 379 0 4 995 1152 76 7 0 chr6 53800867 53801011 -95716026 - B1_Mus2 SINE Alu 0 147 3 4 995 656 71 51 0 chr6 53801065 53801163 -95715874 - BC1_Mm scRNA scRNA -49 103 1 4 995 333 0 0 0 chr6 53801172 53801209 -95715828 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 4 995 2513 191 167 42 chr6 53802349 53803151 -95713886 - RMER19B LTR ERVK 0 902 1 4 995 1660 169 71 37 chr6 53803500 53803880 -95713157 - MTD LTR MaLR -15 404 12 4 995 376 250 0 41 chr6 53804510 53804631 -95712406 + LTR33A LTR ERVL 403 518 -2 4 995 180 0 0 0 chr6 53806368 53806388 -95710649 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 4 995 307 309 0 11 chr6 53806388 53806483 -95710554 - PB1D10 SINE Alu -12 105 12 4 995 23 0 0 0 chr6 53807722 53807745 -95709292 + AT_rich Low_complexity Low_complexity 1 23 0 4 995 601 189 17 28 chr6 53808305 53808485 -95708552 + GA-rich Low_complexity Low_complexity 3 180 0 4 995 210 71 0 0 chr6 53809007 53809035 -95708002 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 995 243 103 0 0 chr6 53809541 53809580 -95707457 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 995 204 40 0 0 chr6 53810519 53810544 -95706493 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 995 411 115 11 44 chr6 53810548 53810639 -95706398 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 4 995 204 228 17 34 chr6 53810708 53810767 -95706270 + L2a LINE L2 3369 3426 0 4 995 802 246 0 94 chr6 53812412 53812645 -95704392 - B3 SINE B2 -5 211 1 4 995 351 0 0 0 chr6 53814207 53814246 -95702791 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 995 198 0 0 0 chr6 53814246 53814267 -95702770 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 995 362 226 7 21 chr6 53815203 53815343 -95701694 + CT-rich Low_complexity Low_complexity 4 141 0 4 995 709 33 0 0 chr6 53815526 53815617 -95701420 + B1_Mus2 SINE Alu 57 147 0 4 995 488 252 25 25 chr6 53815787 53815905 -95701132 + PB1D7 SINE Alu 3 120 0 4 995 305 241 139 0 chr6 53815975 53816083 -95700954 + RSINE1 SINE B4 18 140 -25 4 995 1023 139 0 0 chr6 53816117 53816297 -95700740 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 995 274 342 70 43 chr6 53816340 53816685 -95700352 - Charlie7 DNA MER1_type -174 2438 2085 4 995 6256 225 59 84 chr6 53818284 53819875 -95697162 + Lx7 LINE L1 5834 7386 -310 4 995 342 0 0 0 chr6 53819875 53819913 -95697124 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 995 351 0 0 0 chr6 53819913 53819951 -95697086 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 995 6256 225 59 84 chr6 53819951 53820207 -95696830 + Lx7 LINE L1 7387 7634 -62 4 995 763 151 143 21 chr6 53820208 53820397 -95696640 + RMER1B Other Other 852 1063 -3 4 995 1519 265 108 40 chr6 53820421 53821580 -95695457 - RMER1A Other Other -340 726 1 4 995 213 39 0 0 chr6 53821979 53822005 -95695032 + (T)n Simple_repeat Simple_repeat 1 26 0 4 995 408 325 93 30 chr6 53822735 53823036 -95694001 + ORR1E LTR MaLR 1 320 -39 4 995 32 75 0 0 chr6 53823309 53823376 -95693661 + AT_rich Low_complexity Low_complexity 1 67 0 4 995 269 195 23 0 chr6 53823632 53823701 -95693336 + ID4 SINE ID 15 86 -66 4 995 312 347 116 57 chr6 53825800 53826207 -95690830 + L1MEg LINE L1 811 1214 -4870 4 995 670 251 80 0 chr6 53826207 53826406 -95690631 + B3 SINE B2 2 216 0 4 995 312 347 116 57 chr6 53826406 53826526 -95690511 + L1MEg LINE L1 1215 1368 -4716 4 995 254 305 57 9 chr6 53827291 53827397 -95689640 - MER81 DNA AcHobo -3 111 1 4 995 1610 190 36 56 chr6 53827495 53827885 -95689152 + Lx7 LINE L1 7314 7695 -1 4 995 270 0 0 0 chr6 53828090 53828120 -95688917 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 995 414 172 0 29 chr6 53828120 53828222 -95688815 + (TA)n Simple_repeat Simple_repeat 1 99 0 4 995 925 161 129 0 chr6 53829211 53829404 -95687633 + URR1B DNA MER1_type 1 218 -7 4 995 189 0 0 0 chr6 53830690 53830711 -95686326 + (T)n Simple_repeat Simple_repeat 1 21 0 4 995 329 290 60 0 chr6 53833607 53833707 -95683330 + PB1D10 SINE Alu 4 109 -8 4 995 193 266 78 0 chr6 53834265 53834329 -95682708 - MIR SINE MIR -149 113 45 4 995 458 287 10 153 chr6 53834605 53834893 -95682144 - Charlie4a DNA MER1_type -241 267 21 4 995 430 329 63 36 chr6 53835805 53836026 -95681011 + MLT1H2 LTR MaLR 202 428 -61 4 995 195 69 0 0 chr6 53836765 53836794 -95680243 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 995 2398 53 3 0 chr6 53836808 53837126 -95679911 + ORR1A2 LTR MaLR 1 319 -8 4 995 195 42 0 0 chr6 53837653 53837677 -95679360 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 995 222 341 116 0 chr6 53838213 53838351 -95678686 - MIRb SINE MIR -82 186 33 4 995 1266 257 88 0 chr6 53839399 53839552 -95677485 + ORR1D2 LTR MaLR 2 164 -206 4 995 486 0 0 0 chr6 53839552 53839606 -95677431 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 995 1266 257 88 0 chr6 53839606 53839791 -95677246 + ORR1D2 LTR MaLR 165 369 -1 4 995 401 228 42 10 chr6 53840295 53840403 -95676634 + PB1D7 SINE Alu 5 118 -2 4 995 243 176 0 0 chr6 53841668 53841719 -95675318 + (TTG)n Simple_repeat Simple_repeat 1 51 0 4 995 330 98 0 0 chr6 53841722 53841773 -95675264 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 995 765 0 0 0 chr6 53841889 53841974 -95675063 + (GA)n Simple_repeat Simple_repeat 2 86 0 4 995 758 231 87 44 chr6 53842126 53842324 -95674713 - MTD LTR MaLR -46 373 122 4 995 276 30 0 0 chr6 53842324 53842357 -95674680 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 4 995 2885 23 2 178 chr6 53842363 53842836 -95674201 - RLTR10 LTR ERVK 0 390 1 4 995 758 229 108 60 chr6 53842836 53842950 -95674087 - MTD LTR MaLR -298 121 2 4 995 342 306 145 34 chr6 53843004 53844094 -95672943 + L1MEg LINE L1 1340 2569 -3577 4 995 219 132 37 19 chr6 53844151 53844205 -95672832 + GA-rich Low_complexity Low_complexity 2 56 0 4 995 797 282 34 15 chr6 53844222 53844485 -95672552 + Lx9 LINE L1 6674 6941 -703 4 995 803 350 17 0 chr6 53844537 53844886 -95672151 + Lx9 LINE L1 7081 7435 -209 4 995 407 283 125 68 chr6 53845036 53845594 -95671443 + L1MEg LINE L1 2635 3224 -2922 4 995 318 167 0 0 chr6 53847015 53847075 -95669962 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 995 398 62 0 45 chr6 53848546 53848613 -95668424 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 995 1030 65 0 0 chr6 53848613 53848751 -95668286 - B2_Mm2 SINE B2 -56 139 2 4 995 459 331 61 65 chr6 53849175 53849273 -95667764 + MLT2B5 LTR ERVL 140 243 -474 4 995 2639 68 3 0 chr6 53849273 53849597 -95667440 - ORR1A2 LTR MaLR 0 327 3 4 995 459 331 61 65 chr6 53849597 53849808 -95667229 + MLT2B5 LTR ERVL 244 448 -269 4 995 303 208 56 0 chr6 53850061 53850133 -95666904 - MER81 DNA AcHobo -17 97 22 4 995 236 262 118 12 chr6 53850915 53851000 -95666037 + RSINE1 SINE B4 3 96 -69 4 995 342 0 0 0 chr6 53851591 53851629 -95665408 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 995 1061 282 35 21 chr6 53851640 53852111 -95664926 - L1MA4 LINE L1 -372 5928 5461 4 995 348 77 0 0 chr6 53852183 53852235 -95664802 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 4 995 449 287 68 126 chr6 53852269 53852460 -95664577 - B4 SINE B4 -14 278 99 4 995 724 270 83 23 chr6 53852470 53852851 -95664186 - L1MA4 LINE L1 -480 5403 5027 4 995 194 81 0 26 chr6 53853637 53853675 -95663362 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 4 995 595 96 18 88 chr6 53853678 53853792 -95663245 - B2_Mm1t SINE B2 -85 108 3 4 995 858 62 0 0 chr6 53853980 53854093 -95662944 + (CA)n Simple_repeat Simple_repeat 1 113 0 4 995 23 0 0 0 chr6 53854177 53854200 -95662837 + AT_rich Low_complexity Low_complexity 1 23 0 4 995 456 266 134 29 chr6 53855253 53855462 -95661575 - ORR1E LTR MaLR -119 240 10 4 995 255 229 0 0 chr6 53858699 53858760 -95658277 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 995 294 73 0 0 chr6 53859100 53859141 -95657896 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 995 180 0 0 0 chr6 53859625 53859645 -95657392 + (G)n Simple_repeat Simple_repeat 1 20 0 4 995 263 231 0 9 chr6 53860483 53860592 -95656445 + (TGG)n Simple_repeat Simple_repeat 1 108 0 4 995 214 223 0 31 chr6 53860590 53860687 -95656350 + GA-rich Low_complexity Low_complexity 1 94 0 4 995 982 61 14 0 chr6 53863925 53864072 -95652965 + (CA)n Simple_repeat Simple_repeat 1 149 0 4 995 968 103 83 0 chr6 53864331 53864487 -95652550 + B2_Mm2 SINE B2 1 169 -26 4 995 654 284 96 26 chr6 53865015 53865431 -95651606 + Lx7 LINE L1 1237 1681 -4199 4 995 360 293 57 8 chr6 53865840 53865964 -95651073 + L1_Rod LINE L1 1711 1840 -4007 4 995 246 266 21 4 chr6 53866138 53866241 -95650796 + Lx7 LINE L1 2052 2184 -3663 4 995 455 279 8 24 chr6 53866278 53866403 -95650634 + RSINE1 SINE B4 7 129 -36 4 995 22 0 0 0 chr6 53866426 53866448 -95650589 + AT_rich Low_complexity Low_complexity 1 22 0 4 995 2248 292 112 54 chr6 53866455 53866836 -95650201 + Lx7 LINE L1 2185 2553 -3327 4 995 632 217 35 14 chr6 53866836 53866981 -95650056 + B1_Mur2 SINE Alu 1 148 -1 5 995 2248 292 112 54 chr6 53866981 53867997 -95649040 + Lx7 LINE L1 2554 3657 -2223 4 995 311 0 26 0 chr6 53867997 53868036 -95649001 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 995 2248 292 112 54 chr6 53868036 53868270 -95648767 + Lx7 LINE L1 3658 3910 -1970 4 995 721 288 120 18 chr6 53868277 53868561 -95648476 + Lx7 LINE L1 5593 5907 -1066 4 995 285 89 0 0 chr6 53868561 53868606 -95648431 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 995 251 343 28 17 chr6 53868606 53868631 -95648406 + Lx7 LINE L1 5908 5935 -1038 4 995 230 226 19 0 chr6 53868656 53868709 -95648328 + L1MC LINE L1 5073 5126 -1020 5 995 1187 15 0 0 chr6 53868907 53869037 -95648000 - L1_Mus1 LINE L1 -117 6450 6321 5 995 259 265 113 50 chr6 53869076 53869184 -95647853 - L1MCa LINE L1 -1767 4554 4431 5 995 335 41 0 20 chr6 53869184 53869234 -95647803 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 995 259 265 113 50 chr6 53869234 53869284 -95647753 - L1MCa LINE L1 -1891 4430 4387 5 995 324 0 0 0 chr6 53869308 53869344 -95647693 + (TTG)n Simple_repeat Simple_repeat 1 36 0 5 995 743 176 14 27 chr6 53869369 53869515 -95647522 - B1_Mur1 SINE Alu 0 149 6 5 995 279 319 14 22 chr6 53869517 53869655 -95647382 - L1MCa LINE L1 -4721 1787 1651 5 995 274 300 103 62 chr6 53869633 53870215 -95646822 - L1MCa LINE L1 -5074 1434 829 5 124 316 329 56 1 chr6 53870577 53870749 -95646288 + Tigger5 DNA MER2_type 2179 2363 -43 5 996 278 316 175 30 chr6 53870808 53871203 -95645834 - L1MCa LINE L1 -5963 545 94 5 996 483 189 25 0 chr6 53871332 53871454 -95645583 + GA-rich Low_complexity Low_complexity 2 126 0 5 996 301 305 113 51 chr6 53871471 53871727 -95645310 - B4 SINE B4 -18 274 3 5 996 445 287 138 17 chr6 53872674 53872804 -95644233 + MLT1A0 LTR MaLR 1 150 -215 5 996 1308 151 4 39 chr6 53872804 53873038 -95643999 + URR1A DNA MER1_type 1 226 0 5 996 445 287 138 17 chr6 53873038 53873088 -95643949 + MLT1A0 LTR MaLR 151 202 -163 5 996 336 24 0 0 chr6 53873411 53873452 -95643585 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 996 1189 54 0 0 chr6 53874805 53874952 -95642085 + B1_Mus2 SINE Alu 1 147 0 5 996 271 304 77 17 chr6 53877088 53877205 -95639832 - B4 SINE B4 -3 289 166 5 996 224 348 57 6 chr6 53877958 53878117 -95638920 - L2 LINE L2 -2273 1146 980 5 996 387 0 0 0 chr6 53878198 53878241 -95638796 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 996 204 62 0 59 chr6 53878647 53878681 -95638356 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 5 996 203 304 37 25 chr6 53878719 53878800 -95638237 - MIRc SINE MIR -107 161 80 5 996 260 274 253 92 chr6 53879158 53879407 -95637630 + B4 SINE B4 2 290 -2 5 996 928 216 19 0 chr6 53879912 53880120 -95636917 + B3 SINE B2 5 216 0 5 996 381 321 0 0 chr6 53883581 53883687 -95633350 - RSINE1 SINE B4 -49 116 11 5 996 818 167 0 22 chr6 53883699 53883742 -95633295 + polypyrimidine Low_complexity Low_complexity 138 180 0 5 996 1262 69 6 0 chr6 53883742 53883916 -95633121 + (TTC)n Simple_repeat Simple_repeat 3 177 0 5 996 818 167 0 22 chr6 53883916 53884056 -95632981 + polypyrimidine Low_complexity Low_complexity 1 137 0 5 996 10024 131 13 17 chr6 53884460 53885803 -95631234 + Lx2 LINE L1 4451 5801 -85 5 996 1067 101 0 0 chr6 53885803 53885942 -95631095 + B1_Mus1 SINE Alu 1 139 -9 5 996 229 0 26 53 chr6 53885942 53885980 -95631057 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 996 10024 100 6 22 chr6 53885980 53887200 -95629837 + Lx2 LINE L1 5798 6996 -1 5 996 252 329 134 0 chr6 53887272 53887436 -95629601 + L2a LINE L2 2933 3118 -308 5 996 202 274 15 46 chr6 53888321 53888386 -95628651 - L2c LINE L2 -40 3347 3285 5 996 22 0 0 0 chr6 53888786 53888808 -95628229 + AT_rich Low_complexity Low_complexity 1 22 0 5 996 22 0 0 0 chr6 53892235 53892257 -95624780 + AT_rich Low_complexity Low_complexity 1 22 0 5 996 318 309 117 35 chr6 53892743 53892914 -95624123 + MIRb SINE MIR 36 220 -48 5 996 207 0 0 0 chr6 53894477 53894500 -95622537 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 996 415 244 42 153 chr6 53895287 53895476 -95621561 - RMER30 DNA MER1_type -34 168 1 5 996 296 314 101 41 chr6 53896102 53896321 -95620716 + MLT1K LTR MaLR 5 236 -359 5 996 558 254 66 62 chr6 53896717 53896944 -95620093 + L1MC4 LINE L1 6743 6970 -1072 5 996 308 189 14 0 chr6 53898221 53898295 -95618742 + GA-rich Low_complexity Low_complexity 3 77 0 5 996 198 0 0 0 chr6 53898479 53898501 -95618536 + (A)n Simple_repeat Simple_repeat 1 22 0 5 996 502 230 35 0 chr6 53899045 53899158 -95617879 + MER53 DNA hAT 1 117 -76 5 996 378 121 0 0 chr6 53899159 53899225 -95617812 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 996 296 224 30 0 chr6 53899226 53899293 -95617744 - B4A SINE B4 -1 291 223 5 996 367 195 13 13 chr6 53899299 53899377 -95617660 + MER53 DNA hAT 113 190 -3 5 996 270 56 0 0 chr6 53902404 53902440 -95614597 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 996 415 233 82 16 chr6 53902921 53903043 -95613994 - B1F SINE Alu -18 131 2 5 996 205 396 50 0 chr6 53905363 53905464 -95611573 + MIR SINE MIR 39 144 -118 5 996 372 43 0 0 chr6 53905650 53905696 -95611341 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 5 996 294 331 106 16 chr6 53907345 53907468 -95609569 - RSINE1 SINE B4 -31 134 1 5 996 253 339 18 9 chr6 53907818 53907931 -95609106 + MIR SINE MIR 17 130 -132 5 996 259 208 192 13 chr6 53908418 53908496 -95608541 + PB1D10 SINE Alu 12 103 -14 5 996 214 164 0 35 chr6 53908504 53908561 -95608476 + GA-rich Low_complexity Low_complexity 2 56 0 5 996 1134 228 277 0 chr6 53909048 53909373 -95607664 - MTD LTR MaLR 0 419 5 5 996 2610 126 14 24 chr6 53909374 53909796 -95607241 + Lx4B LINE L1 6627 7044 -14 5 996 228 100 0 0 chr6 53909796 53909836 -95607201 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 5 996 1262 27 7 0 chr6 53911630 53911776 -95605261 + B1_Mm SINE Alu 1 147 0 5 996 329 58 14 42 chr6 53911776 53911848 -95605189 + (CAAAA)n Simple_repeat Simple_repeat 1 70 0 5 996 320 323 35 50 chr6 53911880 53912082 -95604955 - LTR41B LTR ERVL -106 652 454 5 996 280 170 175 70 chr6 53912123 53912237 -95604800 - LTR41B LTR ERVL -564 204 78 5 996 240 35 0 0 chr6 53912430 53912459 -95604578 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 996 234 353 85 78 chr6 53912464 53912593 -95604444 - MLT1F1 LTR MaLR -50 519 390 5 996 197 220 19 39 chr6 53912814 53912866 -95604171 + MER5B DNA MER1_type 114 164 -14 5 996 243 61 0 0 chr6 53913278 53913311 -95603726 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 996 22 0 0 0 chr6 53914448 53914470 -95602567 + AT_rich Low_complexity Low_complexity 1 22 0 5 996 451 272 66 110 chr6 53915270 53915588 -95601449 + L1MA6 LINE L1 5991 6294 -6 5 996 351 274 0 0 chr6 53915615 53915688 -95601349 + PB1D7 SINE Alu 35 107 -13 5 996 234 0 0 0 chr6 53915688 53915714 -95601323 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 5 996 423 0 0 0 chr6 53915727 53915774 -95601263 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 996 29 28 0 0 chr6 53917092 53917128 -95599909 + AT_rich Low_complexity Low_complexity 1 36 0 5 996 724 273 157 4 chr6 53917380 53917636 -95599401 + B4A SINE B4 2 292 0 5 996 211 200 25 0 chr6 53918480 53918520 -95598517 - MIR SINE MIR -142 120 80 5 996 828 274 53 21 chr6 53919225 53919508 -95597529 + B4 SINE B4 1 292 0 5 996 422 304 82 124 chr6 53920037 53920393 -95596644 + MLT1A0 LTR MaLR 8 348 -17 5 996 1549 154 143 35 chr6 53920476 53920819 -95596218 + ORR1C2 LTR MaLR 5 384 0 5 996 289 287 58 83 chr6 53921288 53921444 -95595593 + L2c LINE L2 3236 3387 0 5 996 439 330 7 3 chr6 53922815 53922966 -95594071 + MIR SINE MIR 31 186 -22 5 996 188 348 0 28 chr6 53924914 53924985 -95592052 - L2b LINE L2 -31 3344 3276 5 996 360 0 0 0 chr6 53925140 53925180 -95591857 + (TGAG)n Simple_repeat Simple_repeat 1 40 0 5 996 258 105 0 0 chr6 53925446 53925484 -95591553 + (TTGG)n Simple_repeat Simple_repeat 4 41 0 5 996 312 27 0 0 chr6 53925485 53925522 -95591515 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 5 996 470 290 10 0 chr6 53925653 53925753 -95591284 + ID_B1 SINE B4 98 198 -26 5 996 515 284 122 22 chr6 53925782 53925943 -95591094 + B3A SINE B2 1 177 -21 5 996 216 111 0 0 chr6 53925943 53925979 -95591058 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 996 288 0 0 0 chr6 53925979 53926010 -95591027 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 996 515 284 122 22 chr6 53926010 53926027 -95591010 + B3A SINE B2 178 197 -1 5 996 438 286 44 50 chr6 53926436 53926616 -95590421 - MER96B DNA hAT -238 179 1 5 996 234 279 0 14 chr6 53926728 53926797 -95590240 - ID4_ SINE ID -12 71 4 5 996 183 80 0 0 chr6 53927999 53928024 -95589013 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 996 366 302 54 63 chr6 53929311 53929516 -95587521 + MER63B DNA AcHobo 39 241 -195 5 996 1769 176 71 62 chr6 53929527 53929950 -95587087 - RMER10A LTR ERVL -15 427 1 5 996 323 310 103 0 chr6 53929959 53930104 -95586933 + MER63B DNA AcHobo 255 414 -22 5 996 205 191 24 0 chr6 53930329 53930371 -95586666 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 996 359 272 67 51 chr6 53931693 53931871 -95585166 + MER34 LTR ERV1 362 542 0 5 996 290 357 224 34 chr6 53932279 53932688 -95584349 - L2b LINE L2 -328 3047 2561 5 996 747 75 0 0 chr6 53933513 53933620 -95583417 + (TG)n Simple_repeat Simple_repeat 1 107 0 5 996 306 0 0 0 chr6 53933620 53933653 -95583384 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 996 189 0 0 0 chr6 53934110 53934131 -95582906 + (A)n Simple_repeat Simple_repeat 1 21 0 5 996 197 281 15 59 chr6 53934710 53934778 -95582259 + L3 LINE CR1 1114 1178 -3311 5 996 30 59 0 0 chr6 53935200 53935251 -95581786 + AT_rich Low_complexity Low_complexity 1 51 0 5 996 197 286 18 0 chr6 53937293 53937349 -95579688 - L2c LINE L2 -60 3327 3271 5 996 423 0 0 0 chr6 53937589 53937636 -95579401 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 996 294 125 12 24 chr6 53938274 53938356 -95578681 + A-rich Low_complexity Low_complexity 4 84 0 5 996 294 138 0 0 chr6 53938979 53939037 -95578000 + (CAGTA)n Simple_repeat Simple_repeat 4 61 0 6 996 2284 82 28 6 chr6 53939262 53939582 -95577455 + ORR1A2 LTR MaLR 1 327 0 6 996 21 0 0 0 chr6 53939813 53939834 -95577203 + AT_rich Low_complexity Low_complexity 1 21 0 6 996 273 232 72 0 chr6 53940466 53940535 -95576502 - ID4 SINE ID -8 75 2 6 996 1404 40 0 0 chr6 53940835 53941059 -95575978 + (CTTG)n Simple_repeat Simple_repeat 1 224 0 6 996 2562 203 21 38 chr6 53941064 53941721 -95575316 - Lx4B LINE L1 -20 6980 6296 6 996 738 274 99 38 chr6 53942796 53943158 -95573879 + RLTR16 LTR ERVK 24 465 -40 6 996 183 129 0 0 chr6 53943376 53943407 -95573630 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 996 195 257 150 71 chr6 53943646 53943759 -95573278 + L3b LINE CR1 267 388 -94 6 996 204 300 54 32 chr6 53943756 53943849 -95573188 - MIRb SINE MIR -133 135 41 6 996 253 185 19 0 chr6 53944626 53944680 -95572357 + U6 snRNA snRNA 48 102 -5 6 996 328 142 155 134 chr6 53944904 53945030 -95572007 - Lx9 LINE L1 0 7644 7511 6 996 433 16 49 0 chr6 53945030 53945091 -95571946 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 6 996 328 142 155 134 chr6 53945091 53945151 -95571886 - Lx9 LINE L1 -134 7510 7454 6 996 311 274 0 0 chr6 53945145 53945218 -95571819 + Lx9 LINE L1 7382 7454 -190 6 996 317 229 104 0 chr6 53945288 53945384 -95571653 - MIR SINE MIR -86 176 71 6 996 253 268 41 61 chr6 53945596 53945743 -95571294 + MLT1H2 LTR MaLR 345 488 -1 6 996 181 345 0 0 chr6 53945744 53945799 -95571238 + MIR SINE MIR 77 131 -131 6 996 276 362 61 55 chr6 53945985 53946166 -95570871 - MER115 DNA Tip100 -7 686 505 6 996 233 362 87 66 chr6 53946238 53946572 -95570465 - MER115 DNA Tip100 -326 367 27 6 996 1777 137 6 19 chr6 53946844 53947165 -95569872 - RMER6C LTR ERVK -4 686 370 6 996 333 231 12 37 chr6 53947223 53947304 -95569733 - B1_Mus2 SINE Alu -65 82 4 6 996 482 189 8 131 chr6 53947304 53947399 -95569638 - MT2B LTR ERVL -341 260 181 6 996 261 132 0 0 chr6 53947410 53947448 -95569589 - RMER6C LTR ERVK -682 38 1 6 996 489 211 0 68 chr6 53948218 53948335 -95568702 + B4A SINE B4 184 292 0 6 996 225 333 0 0 chr6 53948337 53948446 -95568591 + (CA)n Simple_repeat Simple_repeat 1 109 0 6 996 262 100 33 0 chr6 53948911 53948971 -95568066 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 996 253 146 0 77 chr6 53948971 53949023 -95568014 + B1_Mur1 SINE Alu 95 142 -7 6 996 390 159 0 0 chr6 53949695 53949764 -95567273 + CT-rich Low_complexity Low_complexity 1 69 0 6 996 583 277 19 87 chr6 53949765 53949971 -95567066 - ID_B1 SINE B4 -31 193 2 6 996 2106 162 28 6 chr6 53950596 53950955 -95566082 - ORR1B2 LTR MaLR 0 367 1 6 996 1393 227 72 136 chr6 53951003 53951548 -95565489 + RMER19C LTR ERVK 3 611 0 6 996 466 153 204 0 chr6 53951951 53952049 -95564988 - Lx3C LINE L1 -485 6491 6374 6 996 451 282 144 26 chr6 53952152 53952381 -95564656 - MLT1B LTR MaLR -132 258 3 6 996 391 360 97 11 chr6 53952446 53952713 -95564324 - MLT1D LTR MaLR -2 503 214 6 996 312 143 0 0 chr6 53952976 53953032 -95564005 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 996 339 307 18 97 chr6 53953550 53953777 -95563260 - MLT1D LTR MaLR -255 212 4 6 996 342 267 47 19 chr6 53955189 53955296 -95561741 + PB1D10 SINE Alu 1 110 -7 6 996 288 0 0 0 chr6 53955309 53955341 -95561696 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 6 996 258 391 9 0 chr6 53956111 53956221 -95560816 + MIRb SINE MIR 27 137 -131 6 996 306 366 37 12 chr6 53956765 53956928 -95560109 + RMER15 LTR ERVL 393 559 -16 6 996 182 37 37 0 chr6 53957752 53957779 -95559258 + (TATG)n Simple_repeat Simple_repeat 3 30 0 6 996 522 306 32 54 chr6 53957789 53958069 -95558968 - B4 SINE B4 -18 274 1 6 996 511 259 52 130 chr6 53959878 53960109 -95556928 - ID_B1 SINE B4 -4 220 8 6 996 977 155 166 0 chr6 53961406 53961599 -95555438 + URR1B DNA MER1_type 1 225 0 6 996 408 268 87 0 chr6 53961640 53961767 -95555270 - B1F2 SINE Alu 0 149 12 6 996 565 319 5 42 chr6 53961653 53961866 -95555171 - ID_B1 SINE B4 -18 206 2 6 996 268 260 199 33 chr6 53962334 53962485 -95554552 + MLT1L LTR MaLR 344 519 -91 6 996 573 15 0 0 chr6 53963306 53963372 -95553665 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 996 420 20 0 0 chr6 53963372 53963420 -95553617 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 996 1617 293 14 31 chr6 53963426 53963940 -95553097 - Lx9 LINE L1 -184 7460 6956 6 996 860 237 147 17 chr6 53963968 53964268 -95552769 - Lx8 LINE L1 -159 7314 6976 6 996 295 273 59 22 chr6 53964313 53964448 -95552589 - L1M5 LINE L1 -642 5598 5459 6 996 1269 277 155 49 chr6 53965073 53965723 -95551314 + Lx8 LINE L1 6755 7473 0 6 996 23 0 0 0 chr6 53965723 53965746 -95551291 + AT_rich Low_complexity Low_complexity 1 23 0 6 996 1742 206 65 3 chr6 53965762 53966118 -95550919 - ORR1C1 LTR MaLR 0 378 1 6 996 1342 197 40 101 chr6 53966149 53966527 -95550510 + MTEa LTR MaLR 25 379 0 6 996 378 0 0 0 chr6 53966868 53966910 -95550127 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 996 210 143 0 0 chr6 53967955 53967990 -95549047 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 6 996 3686 118 57 22 chr6 53970178 53970759 -95546278 - MT2B LTR ERVL 0 601 1 6 996 1151 216 127 18 chr6 53971507 53971846 -95545191 - MTD LTR MaLR -39 380 5 6 996 294 29 0 0 chr6 53972678 53972713 -95544324 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6 996 284 308 44 0 chr6 53972889 53972980 -95544057 + RSINE1 SINE B4 2 96 -69 6 996 954 90 67 0 chr6 53973341 53973475 -95543562 - B1_Mus1 SINE Alu -5 143 1 6 996 180 333 50 0 chr6 53973691 53973751 -95543286 + MIR SINE MIR 13 75 -187 6 996 536 208 104 0 chr6 53973823 53973948 -95543089 + B1_Mur1 SINE Alu 3 140 -9 6 996 233 303 83 26 chr6 53974394 53974550 -95542487 + L1M5 LINE L1 5665 5829 -295 6 996 184 295 44 33 chr6 53976059 53976150 -95540887 + MER5A DNA MER1_type 40 131 -58 6 996 766 146 0 35 chr6 53976321 53976492 -95540545 + GA-rich Low_complexity Low_complexity 3 167 0 6 996 279 0 0 0 chr6 53976570 53976601 -95540436 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 996 583 316 67 78 chr6 53976604 53976961 -95540076 + ORR1E LTR MaLR 7 359 0 6 996 546 29 0 0 chr6 53976970 53977038 -95539999 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 996 1362 206 120 8 chr6 53977039 53977407 -95539630 + MTD LTR MaLR 10 418 -1 6 996 1071 273 161 76 chr6 53977412 53978165 -95538872 + MTD-int LTR MaLR 3 949 -309 6 996 2293 124 85 0 chr6 53978165 53978528 -95538509 - ORR1B1 LTR MaLR 0 394 1 6 996 1071 282 143 27 chr6 53978528 53978708 -95538329 + MTD-int LTR MaLR 950 1140 -118 6 996 1209 231 78 16 chr6 53978708 53979016 -95538021 + RMER20B LTR ERVK 1 327 -300 6 996 299 258 155 0 chr6 53979135 53979232 -95537805 + MTD-int LTR MaLR 1147 1258 0 6 996 730 276 39 47 chr6 53979232 53979464 -95537573 + MTD LTR MaLR 1 230 -189 6 996 340 158 0 26 chr6 53979487 53979565 -95537472 + (TATG)n Simple_repeat Simple_repeat 1 76 0 6 996 858 288 73 20 chr6 53979645 53979989 -95537048 - MLT2B4 LTR ERVL -188 368 7 6 996 2950 147 65 50 chr6 53980002 53980568 -95536469 - RMER15 LTR ERVL 0 575 1 6 996 263 344 69 0 chr6 53982683 53982814 -95534223 - MIRb SINE MIR -99 169 30 6 996 468 51 0 0 chr6 53984486 53984545 -95532492 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 996 575 228 112 46 chr6 53985974 53986126 -95530911 + RSINE1 SINE B4 2 163 -2 6 996 226 280 19 0 chr6 53986128 53986285 -95530752 + (CATATA)n Simple_repeat Simple_repeat 5 164 0 6 996 888 215 29 5 chr6 53986959 53986998 -95530039 - B3 SINE B2 0 216 174 6 996 2601 127 23 3 chr6 53986998 53987384 -95529653 - ORR1B1 LTR MaLR 0 394 1 6 996 888 215 29 5 chr6 53987384 53987554 -95529483 - B3 SINE B2 -43 173 3 6 996 417 20 0 0 chr6 53990681 53990731 -95526306 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 996 216 0 0 0 chr6 53991349 53991373 -95525664 + (T)n Simple_repeat Simple_repeat 1 24 0 6 996 193 294 8 128 chr6 53992415 53992532 -95524505 + MIRb SINE MIR 37 139 -129 6 996 514 191 0 57 chr6 53992591 53992713 -95524324 + B3A SINE B2 7 121 -77 6 996 342 45 0 0 chr6 53992730 53992774 -95524263 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 996 2146 149 28 28 chr6 53992924 53993323 -95523714 - MTB_Mm LTR MaLR -8 399 1 6 996 204 293 0 0 chr6 53993351 53993409 -95523628 - L2b LINE L2 -5 3370 3313 6 996 1639 86 8 4 chr6 53994142 53994377 -95522660 + L1_Mus3 LINE L1 6401 6636 -2 6 996 1610 57 0 0 chr6 53994765 53994958 -95522079 + B2_Mm1a SINE B2 1 193 0 6 996 1940 122 26 29 chr6 53995331 53995676 -95521361 + RLTR15 LTR ERVK 16 359 0 6 996 473 84 0 14 chr6 53996792 53996864 -95520173 + (TCCC)n Simple_repeat Simple_repeat 3 73 0 6 996 965 181 23 56 chr6 53999320 53999536 -95517501 - MTD LTR MaLR -38 381 173 6 996 243 127 39 90 chr6 53999694 53999772 -95517265 + A-rich Low_complexity Low_complexity 3 76 0 6 996 760 257 58 5 chr6 53999780 53999987 -95517050 - Lx7 LINE L1 -336 7360 7143 6 996 371 145 65 0 chr6 54000001 54000063 -95516974 - Lx7 LINE L1 -583 7113 7048 1 996 428 191 15 191 chr6 54000063 54000199 -95516838 - MTC LTR MaLR -308 113 2 2 996 230 224 182 39 chr6 54000211 54000392 -95516645 + MER33 DNA MER1_type 118 324 0 3 996 333 0 0 0 chr6 54000884 54000921 -95516116 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 997 327 289 125 98 chr6 54002493 54002575 -95514462 - MER47B DNA MER2_type 0 418 342 5 997 1893 151 69 26 chr6 54002575 54002922 -95514115 - ORR1B2 LTR MaLR -1 366 5 6 997 327 289 125 98 chr6 54002922 54003215 -95513822 - MER47B DNA MER2_type -77 341 33 5 997 621 279 95 25 chr6 54003789 54004105 -95512932 + L1MB8 LINE L1 5834 6171 -7 7 997 515 237 8 0 chr6 54004146 54004264 -95512773 + PB1D9 SINE Alu 2 120 0 8 997 229 169 0 33 chr6 54004264 54004325 -95512712 + A-rich Low_complexity Low_complexity 1 59 0 9 997 899 129 0 6 chr6 54004461 54004617 -95512420 + (TTCC)n Simple_repeat Simple_repeat 4 158 0 1 997 187 116 22 44 chr6 54004639 54004684 -95512353 + CT-rich Low_complexity Low_complexity 4 47 0 1 997 248 294 68 22 chr6 54004719 54004815 -95512222 - PB1D10 SINE Alu -8 109 13 1 997 210 372 15 30 chr6 54007035 54007168 -95509869 + MIR3 SINE MIR 35 165 -43 1 997 208 310 109 39 chr6 54007642 54007954 -95509083 - L2a LINE L2 -157 3269 2936 1 997 496 265 151 5 chr6 54008140 54008352 -95508685 + Lx8 LINE L1 7200 7442 -31 1 997 972 238 0 14 chr6 54010437 54010650 -95506387 + B3 SINE B2 2 211 -5 1 997 234 81 0 0 chr6 54010683 54010720 -95506317 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 1 997 1214 47 0 0 chr6 54010720 54010868 -95506169 - B1_Mus1 SINE Alu 0 148 1 1 997 478 254 25 17 chr6 54013367 54013487 -95503550 + B4A SINE B4 172 292 0 1 997 387 0 0 0 chr6 54013506 54013549 -95503488 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 997 540 331 31 38 chr6 54013552 54013841 -95503196 + L1M5 LINE L1 2583 2869 -3277 2 997 352 340 68 30 chr6 54014290 54014660 -95502377 + L1M5 LINE L1 3251 3634 -2512 2 997 438 309 98 23 chr6 54014899 54015091 -95501946 + L1M5 LINE L1 4500 4705 -1441 2 997 1361 90 21 0 chr6 54015091 54015279 -95501758 + B2_Mm2 SINE B2 3 194 -1 2 997 438 309 98 23 chr6 54015279 54015391 -95501646 + L1M5 LINE L1 4706 4827 -1319 2 997 354 236 123 30 chr6 54015424 54015649 -95501388 + L1M5 LINE L1 5254 5488 -676 2 997 232 175 51 34 chr6 54015938 54015997 -95501040 - L1M5 LINE L1 -263 5901 5842 2 997 278 280 45 27 chr6 54016107 54016217 -95500820 - L1M5 LINE L1 -539 5634 5523 2 997 282 182 0 0 chr6 54016571 54016637 -95500400 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 997 385 133 27 0 chr6 54016702 54016777 -95500260 + GA-rich Low_complexity Low_complexity 2 78 0 2 997 258 296 10 10 chr6 54017896 54017995 -95499042 + PB1D10 SINE Alu 11 109 -8 2 997 495 0 0 0 chr6 54019234 54019289 -95497748 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 997 1197 68 0 0 chr6 54019455 54019632 -95497405 + (TG)n Simple_repeat Simple_repeat 2 178 0 2 997 629 286 88 102 chr6 54020250 54020593 -95496444 + MER2 DNA MER2_type 8 345 0 2 997 378 276 103 7 chr6 54022188 54022334 -95494703 - B3A SINE B2 -38 160 1 3 997 291 158 17 39 chr6 54022958 54023065 -95493972 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 997 333 0 0 0 chr6 54023065 54023101 -95493936 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 997 235 223 25 59 chr6 54023101 54023147 -95493890 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 997 219 204 0 0 chr6 54024500 54024554 -95492483 + CT-rich Low_complexity Low_complexity 3 56 0 3 997 203 287 69 0 chr6 54025186 54025273 -95491764 + MIR SINE MIR 104 196 -66 3 997 478 333 14 27 chr6 54025714 54025933 -95491104 + MLT1D LTR MaLR 288 503 -2 3 997 475 286 276 24 chr6 54027232 54027483 -95489554 - MLT1D LTR MaLR -15 490 181 3 997 1267 164 51 0 chr6 54027483 54027697 -95489340 - URR1B DNA MER1_type 0 225 1 3 997 475 287 75 44 chr6 54027697 54027856 -95489181 - MLT1D LTR MaLR -325 180 12 3 997 229 410 45 0 chr6 54028904 54029060 -95487977 - L2a LINE L2 -3 3423 3261 3 997 608 217 168 5 chr6 54029079 54029264 -95487773 + B3 SINE B2 2 216 0 4 997 601 297 113 18 chr6 54029315 54029589 -95487448 + ORR1E LTR MaLR 1 300 -59 4 997 273 386 62 6 chr6 54029664 54029841 -95487196 - L2a LINE L2 -259 3167 2981 3 997 653 296 138 25 chr6 54029960 54030366 -95486671 - L2a LINE L2 -556 2863 2412 3 997 342 0 0 0 chr6 54030427 54030465 -95486572 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 997 382 329 25 19 chr6 54030895 54031056 -95485981 - MER102b DNA MER1_type -179 162 1 4 997 213 300 26 115 chr6 54031497 54031610 -95485427 - L2c LINE L2 -14 3373 3271 4 997 362 202 0 39 chr6 54031668 54031710 -95485327 + polypurine Low_complexity Low_complexity 2 42 0 4 997 306 0 0 0 chr6 54031710 54031744 -95485293 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 997 362 202 0 39 chr6 54031744 54031830 -95485207 + GA-rich Low_complexity Low_complexity 43 124 0 4 997 237 236 42 0 chr6 54031849 54031921 -95485116 + ID4 SINE ID 9 83 0 4 997 243 246 14 28 chr6 54032173 54032244 -95484793 + ID_B1 SINE B4 124 193 -31 4 997 189 0 0 0 chr6 54032269 54032290 -95484747 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 997 266 0 29 0 chr6 54033591 54033625 -95483412 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 5 997 246 264 93 19 chr6 54033841 54033949 -95483088 - MIRb SINE MIR -70 198 83 5 997 565 261 204 23 chr6 54034897 54035113 -95481924 - MLT1A0 LTR MaLR -101 264 10 5 997 195 42 0 0 chr6 54035921 54035945 -95481092 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 997 315 247 14 0 chr6 54036967 54037040 -95479997 + ID4_ SINE ID 10 83 0 5 997 651 286 110 26 chr6 54038704 54039085 -95477952 + MLT1C LTR MaLR 50 462 -5 5 997 230 307 32 73 chr6 54039853 54039976 -95477061 + MIR SINE MIR 34 151 -111 5 997 714 268 100 25 chr6 54040025 54040266 -95476771 - MER2 DNA MER2_type -1 344 86 5 997 402 21 0 0 chr6 54040565 54040612 -95476425 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 997 300 378 6 63 chr6 54040985 54041143 -95475894 - LTR33B LTR ERVL -331 172 24 6 997 268 287 58 41 chr6 54043264 54043435 -95473602 + L1MC LINE L1 5681 5854 -2028 6 997 568 236 36 0 chr6 54043646 54043786 -95473251 + ID_B1 SINE B4 80 224 0 6 997 267 283 127 28 chr6 54043811 54043841 -95473196 - MT2A LTR ERVL 0 475 445 6 997 288 0 0 0 chr6 54043841 54043873 -95473164 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 997 894 233 95 79 chr6 54043873 54044285 -95472752 - MT2A LTR ERVL -73 511 1 6 997 410 73 0 0 chr6 54044285 54044340 -95472697 - MERVL_2A-int LTR ERVL 0 5761 5707 6 997 233 219 0 88 chr6 54044341 54044421 -95472616 - ORR1A3-int LTR MaLR -1324 639 567 6 997 4657 151 35 11 chr6 54044421 54045227 -95471810 - MERVL_2A-int LTR ERVL -133 5628 4762 6 997 547 264 75 47 chr6 54045227 54045481 -95471556 + L1MA9 LINE L1 6052 6312 0 6 997 1374 131 9 43 chr6 54046072 54046303 -95470734 - URR1B DNA MER1_type 0 225 3 6 997 233 179 20 69 chr6 54046629 54046731 -95470306 + RMER17C LTR ERVK 67 163 -247 6 997 397 281 69 52 chr6 54048242 54048415 -95468622 - RLTR14 LTR ERV1 0 382 207 6 997 684 239 35 31 chr6 54048492 54048747 -95468290 + RLTR15 LTR ERVK 24 279 -80 7 997 238 366 56 7 chr6 54049083 54049226 -95467811 - MLT1G LTR MaLR -13 578 429 7 997 276 111 0 0 chr6 54050533 54050578 -95466459 + (CATA)n Simple_repeat Simple_repeat 2 46 0 7 997 237 298 98 16 chr6 54051841 54051964 -95465073 - MIRb SINE MIR -5 263 131 7 997 1126 108 0 0 chr6 54052107 54052273 -95464764 - B2_Mm2 SINE B2 -28 167 2 7 997 311 238 125 0 chr6 54052417 54052497 -95464540 - 5S rRNA rRNA -30 91 2 7 997 22 0 0 0 chr6 54054419 54054441 -95462596 + AT_rich Low_complexity Low_complexity 1 22 0 7 997 420 287 110 23 chr6 54056081 54056222 -95460815 - Charlie1a DNA MER1_type -20 1435 1284 7 997 1537 154 123 24 chr6 54056222 54056580 -95460457 + RMER17C LTR ERVK 1 386 -24 7 997 378 0 0 0 chr6 54056580 54056622 -95460415 + (TC)n Simple_repeat Simple_repeat 2 43 0 7 997 1537 154 123 24 chr6 54056622 54056636 -95460401 + RMER17C LTR ERVK 387 409 -1 7 997 574 291 107 23 chr6 54056636 54056794 -95460243 - Charlie1a DNA MER1_type -172 1283 1110 7 997 345 200 209 11 chr6 54058062 54058153 -95458884 - PB1D10 SINE Alu -8 109 1 8 997 1634 188 57 46 chr6 54059009 54059378 -95457659 + ORR1C2 LTR MaLR 12 384 0 8 997 441 36 0 0 chr6 54060014 54060069 -95456968 + (CTG)n Simple_repeat Simple_repeat 1 55 0 8 997 249 309 121 46 chr6 54060706 54060879 -95456158 - MIR SINE MIR -76 192 7 8 997 280 207 121 12 chr6 54060971 54061054 -95455983 - MER5B DNA MER1_type -25 153 62 8 997 231 286 82 12 chr6 54061145 54061230 -95455807 - MER58A DNA MER1_type -126 98 8 8 997 567 122 0 0 chr6 54061404 54061494 -95455543 + (TC)n Simple_repeat Simple_repeat 1 90 0 8 997 273 214 0 54 chr6 54061711 54061785 -95455252 + C-rich Low_complexity Low_complexity 1 70 0 8 997 896 159 204 0 chr6 54062280 54062456 -95454581 - B3 SINE B2 -3 213 2 8 997 333 0 0 0 chr6 54062897 54062934 -95454103 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 997 378 0 0 0 chr6 54063748 54063790 -95453247 + (TTA)n Simple_repeat Simple_repeat 2 43 0 9 997 216 0 0 0 chr6 54064400 54064424 -95452613 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 997 193 361 72 0 chr6 54064768 54064865 -95452172 - MIRb SINE MIR -52 216 113 9 997 1414 319 56 44 chr6 54064903 54065217 -95451820 + MLT1E1A LTR MaLR 6 314 -366 9 997 234 0 0 0 chr6 54065217 54065243 -95451794 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 9 997 1414 319 56 44 chr6 54065243 54065593 -95451444 + MLT1E1A LTR MaLR 315 677 -3 9 997 394 353 191 18 chr6 54066069 54066519 -95450518 - L3 LINE CR1 -112 4377 3850 9 997 182 339 0 0 chr6 54067256 54067315 -95449722 + L3 LINE CR1 4429 4487 -2 9 997 607 251 505 6 chr6 54067481 54067727 -95449310 - ORR1D2 LTR MaLR -22 397 17 9 997 187 303 108 15 chr6 54068065 54068184 -95448853 + MIR SINE MIR 52 175 -87 9 997 304 250 40 72 chr6 54068255 54068380 -95448657 + MLT1K LTR MaLR 448 568 -27 9 997 578 219 130 26 chr6 54068399 54068591 -95448446 - MTD LTR MaLR -2 417 206 1 997 951 146 21 0 chr6 54068800 54068944 -95448093 + B1_Mur3 SINE Alu 2 148 -1 1 997 249 108 0 0 chr6 54069305 54069342 -95447695 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 1 997 675 46 0 0 chr6 54069749 54069836 -95447201 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 997 25 0 0 0 chr6 54071449 54071474 -95445563 + AT_rich Low_complexity Low_complexity 1 25 0 1 997 2359 255 57 34 chr6 54071474 54072176 -95444861 - Lx9 LINE L1 -2 7642 6925 1 997 1570 199 179 19 chr6 54072204 54072629 -95444408 + Lx9 LINE L1 6412 6904 -740 1 997 421 264 75 68 chr6 54072627 54072920 -95444117 - Lx9 LINE L1 0 7644 7350 1 997 721 164 94 29 chr6 54072926 54073096 -95443941 - ORR1B1 LTR MaLR -213 181 1 1 997 689 261 116 69 chr6 54073308 54073562 -95443475 + B4 SINE B4 3 272 -20 1 997 639 0 0 0 chr6 54073562 54073633 -95443404 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 997 204 40 0 0 chr6 54073633 54073657 -95443380 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 997 689 261 116 69 chr6 54073657 54073677 -95443360 + B4 SINE B4 273 290 -2 1 997 379 319 84 48 chr6 54073850 54074288 -95442749 - L1_Mur3 LINE L1 -6439 1273 820 1 997 198 365 47 28 chr6 54075064 54075171 -95441866 + L2b LINE L2 2632 2740 -679 1 997 216 225 0 0 chr6 54075466 54075506 -95441531 + L2 LINE L2 1768 1807 -1612 1 997 232 315 51 57 chr6 54075828 54076003 -95441034 + L2b LINE L2 2920 3093 -282 1 997 270 0 0 0 chr6 54076162 54076192 -95440845 + (T)n Simple_repeat Simple_repeat 1 30 0 1 997 1198 50 0 0 chr6 54076199 54076338 -95440699 - B1_Mus2 SINE Alu -7 140 2 1 997 41 36 0 0 chr6 54078231 54078286 -95438751 + AT_rich Low_complexity Low_complexity 1 55 0 1 997 244 289 125 0 chr6 54078784 54078888 -95438149 + L1M3 LINE L1 5647 5763 -417 1 997 399 21 0 0 chr6 54079035 54079083 -95437954 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 997 504 0 0 0 chr6 54079083 54079138 -95437899 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 997 486 0 0 0 chr6 54080129 54080183 -95436854 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 997 415 338 169 26 chr6 54080333 54080676 -95436361 + LTR78 LTR ERV1 200 591 -713 1 997 243 103 0 0 chr6 54081202 54081241 -95435796 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 1 997 212 205 22 43 chr6 54081777 54081869 -95435168 + CT-rich Low_complexity Low_complexity 2 91 0 1 997 217 203 68 0 chr6 54082579 54082638 -95434399 + CT-rich Low_complexity Low_complexity 3 65 0 1 997 508 246 35 0 chr6 54082687 54082801 -95434236 - PB1D7 SINE Alu -1 119 2 1 997 192 97 0 0 chr6 54084257 54084288 -95432749 + (G)n Simple_repeat Simple_repeat 1 31 0 1 997 448 307 86 54 chr6 54084428 54084707 -95432330 + L1ME4a LINE L1 5701 5988 -136 1 997 915 220 6 22 chr6 54084847 54085028 -95432009 - MLT1A0 LTR MaLR -2 363 186 1 997 920 166 133 20 chr6 54085045 54085248 -95431789 + URR1A DNA MER1_type 1 226 0 1 997 261 286 12 0 chr6 54085303 54085387 -95431650 - Lx8 LINE L1 -1602 5871 5787 1 997 276 303 122 49 chr6 54085415 54085620 -95431417 + L1_Mur3 LINE L1 4918 5137 -743 1 997 23 33 0 0 chr6 54085781 54085811 -95431226 + AT_rich Low_complexity Low_complexity 1 30 0 1 997 598 279 63 5 chr6 54085812 54086107 -95430930 + L1M2 LINE L1 5153 5469 -831 1 997 274 333 20 14 chr6 54086109 54086255 -95430782 - B1_Mus2 SINE Alu 0 147 1 1 997 382 209 52 43 chr6 54086386 54086501 -95430536 - MIR SINE MIR -141 121 6 1 997 1013 310 29 58 chr6 54086531 54086911 -95430126 - MTEa LTR MaLR -10 369 1 1 997 318 271 47 12 chr6 54087033 54087119 -95429918 - L2a LINE L2 -9 3417 3329 1 997 729 193 56 21 chr6 54087400 54087422 -95429615 - B1_Mur1 SINE Alu -1 148 130 1 997 183 42 0 0 chr6 54087422 54087446 -95429591 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 997 729 193 56 21 chr6 54087446 54087566 -95429471 - B1_Mur1 SINE Alu -20 129 3 1 997 603 329 42 28 chr6 54089014 54089382 -95427655 + L1MB3 LINE L1 5613 5992 -186 1 997 817 80 269 62 chr6 54089426 54089586 -95427451 - B2_Mm2 SINE B2 -1 194 2 1 997 853 312 23 23 chr6 54091439 54091698 -95425339 + MER2 DNA MER2_type 86 344 -1 1 997 213 146 0 0 chr6 54092974 54093022 -95424015 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 1 997 369 0 0 0 chr6 54093025 54093066 -95423971 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 997 384 158 0 0 chr6 54093103 54093179 -95423858 + CT-rich Low_complexity Low_complexity 1 76 0 1 997 217 381 9 0 chr6 54093179 54093284 -95423753 - L2b LINE L2 0 3375 3270 1 997 308 305 63 0 chr6 54093575 54093670 -95423367 + MER58C DNA MER1_type 115 215 0 1 997 191 277 93 51 chr6 54093913 54094031 -95423006 - MIRm SINE MIR -99 177 55 1 997 452 250 40 20 chr6 54094707 54094858 -95422179 - RSINE1 SINE B4 -10 155 2 1 997 480 302 45 23 chr6 54095185 54095375 -95421662 - MIR SINE MIR -49 219 19 1 997 273 324 36 36 chr6 54095845 54095957 -95421080 + MIRc SINE MIR 110 221 -47 1 997 781 165 263 6 chr6 54096899 54097070 -95419967 - B3 SINE B2 -1 215 1 1 997 372 241 85 57 chr6 54098978 54099119 -95417918 + MER5A DNA MER1_type 45 189 0 1 997 293 301 110 42 chr6 54099787 54099905 -95417132 - B1F1 SINE Alu -1 148 23 1 997 281 327 112 5 chr6 54102903 54103109 -95413928 - LTR33 LTR ERVL -7 508 281 1 997 239 233 70 0 chr6 54103265 54103351 -95413686 + (CAGTG)n Simple_repeat Simple_repeat 4 95 0 1 997 261 172 80 0 chr6 54103362 54103513 -95413524 + (CAGTG)n Simple_repeat Simple_repeat 3 165 0 1 997 378 196 76 0 chr6 54103569 54103906 -95413131 + (CAGTG)n Simple_repeat Simple_repeat 1 362 0 1 997 275 306 95 48 chr6 54104210 54104399 -95412638 + MIRb SINE MIR 58 255 -13 1 997 261 0 0 0 chr6 54104541 54104570 -95412467 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 997 1013 146 171 5 chr6 54104633 54104826 -95412211 - URR1A DNA MER1_type 0 226 2 1 997 355 272 0 21 chr6 54105881 54105975 -95411062 - B4A SINE B4 -199 93 2 1 997 219 82 68 14 chr6 54106049 54106123 -95410914 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 997 325 340 125 33 chr6 54108932 54109423 -95407614 - MLT2B3 LTR ERVL 0 533 1 1 997 255 288 0 15 chr6 54110023 54110090 -95406947 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 1 997 306 0 0 0 chr6 54110107 54110141 -95406896 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 997 209 333 0 0 chr6 54110360 54110429 -95406608 + CT-rich Low_complexity Low_complexity 4 72 0 1 997 21 0 0 0 chr6 54110619 54110640 -95406397 + AT_rich Low_complexity Low_complexity 1 21 0 1 997 211 372 53 9 chr6 54111470 54111584 -95405453 + MIRc SINE MIR 20 138 -130 1 997 263 141 22 45 chr6 54112078 54112167 -95404870 + (CAAA)n Simple_repeat Simple_repeat 2 88 0 1 997 243 170 0 0 chr6 54112321 54112368 -95404669 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 1 997 474 18 0 0 chr6 54113575 54113630 -95403407 + (TTGG)n Simple_repeat Simple_repeat 1 55 0 1 997 2721 191 68 21 chr6 54115156 54115760 -95401277 + Lx9 LINE L1 7005 7636 -8 1 997 468 0 0 0 chr6 54117992 54118044 -95398993 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 997 36 62 0 0 chr6 54118218 54118282 -95398755 + AT_rich Low_complexity Low_complexity 1 64 0 1 997 654 20 160 13 chr6 54118690 54118840 -95398197 + CT-rich Low_complexity Low_complexity 4 175 0 1 997 893 11 0 118 chr6 54118840 54119044 -95397993 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 1 997 309 345 52 33 chr6 54119047 54119200 -95397837 - HAL1-3A_ME LINE L1 -419 2439 2284 1 997 294 113 84 0 chr6 54119205 54119276 -95397761 + CT-rich Low_complexity Low_complexity 1 77 0 1 997 240 368 0 22 chr6 54119277 54119366 -95397671 + T-rich Low_complexity Low_complexity 2 88 0 1 997 270 0 0 0 chr6 54119671 54119701 -95397336 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 997 201 133 0 0 chr6 54119880 54119910 -95397127 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 997 324 370 17 0 chr6 54119944 54120063 -95396974 + MIR3 SINE MIR 61 181 -27 1 997 630 282 71 46 chr6 54120080 54120277 -95396760 + ID_B1 SINE B4 2 203 -21 1 997 619 245 0 40 chr6 54120938 54121087 -95395950 - B1F2 SINE Alu -5 144 2 1 997 456 301 174 12 chr6 54121179 54121592 -95395445 - L2a LINE L2 -17 3409 2930 1 997 742 255 75 0 chr6 54122505 54122705 -95394332 + B3 SINE B2 2 216 0 1 997 21 36 0 0 chr6 54123183 54123211 -95393826 + AT_rich Low_complexity Low_complexity 1 28 0 1 997 980 49 0 0 chr6 54124033 54124155 -95392882 + B1_Mus2 SINE Alu 26 147 0 1 997 723 221 14 7 chr6 54124520 54124661 -95392376 + B1_Mur2 SINE Alu 1 142 -7 1 997 1004 243 88 4 chr6 54124972 54125199 -95391838 + B4A SINE B4 1 246 -46 1 997 257 221 15 0 chr6 54125199 54125267 -95391770 + GA-rich Low_complexity Low_complexity 2 70 0 1 997 250 306 0 0 chr6 54125267 54125329 -95391708 + B4A SINE B4 217 278 -14 1 997 351 44 0 0 chr6 54125332 54125377 -95391660 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 997 190 333 30 96 chr6 54125775 54125941 -95391096 + L2a LINE L2 3269 3423 -3 1 997 381 93 0 0 chr6 54128044 54128098 -95388939 + (TTA)n Simple_repeat Simple_repeat 2 55 0 1 997 295 23 0 43 chr6 54128801 54128847 -95388190 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 1 997 187 369 35 28 chr6 54130726 54130871 -95386166 - MER5B DNA MER1_type -8 170 25 1 997 1677 137 66 3 chr6 54131097 54131383 -95385654 - MTD LTR MaLR 0 419 116 1 124 5992 191 98 57 chr6 54131386 54133342 -95383695 + Lx9 LINE L1 5313 7498 -146 1 998 336 48 0 0 chr6 54133342 54133384 -95383653 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 998 5992 187 126 30 chr6 54133384 54133504 -95383533 + Lx9 LINE L1 7499 7643 -1 1 998 349 194 13 40 chr6 54133524 54133599 -95383438 - MTD LTR MaLR -299 120 48 1 998 591 15 0 0 chr6 54135060 54135128 -95381909 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 998 639 343 62 49 chr6 54135149 54135474 -95381563 - MER2 DNA MER2_type -16 329 1 2 998 9194 197 87 21 chr6 54135502 54137021 -95380016 - Lx7 LINE L1 -301 7395 5781 2 998 387 0 0 0 chr6 54137021 54137064 -95379973 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 998 9194 167 52 52 chr6 54137064 54138983 -95378054 - Lx7 LINE L1 -100 5780 3869 2 998 1356 85 0 0 chr6 54139068 54139412 -95377625 + (CA)n Simple_repeat Simple_repeat 1 344 0 2 998 2432 167 13 0 chr6 54139448 54139831 -95377206 - MTC LTR MaLR 0 421 34 2 998 780 113 9 0 chr6 54139832 54139947 -95377090 - URR1B DNA MER1_type 0 225 110 2 998 225 200 0 0 chr6 54139961 54140001 -95377036 - MTC LTR MaLR -381 40 1 2 998 4952 173 46 31 chr6 54140001 54141127 -95375910 - Lx7 LINE L1 -2112 3768 2626 2 998 1408 144 212 0 chr6 54141129 54141407 -95375630 - RLTR15 LTR ERVK 0 359 23 2 998 1476 206 138 23 chr6 54142692 54143039 -95373998 - MTD LTR MaLR -21 398 12 2 998 351 0 0 0 chr6 54143230 54143269 -95373768 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 998 590 129 25 19 chr6 54143269 54143427 -95373610 + (CAGAGA)n Simple_repeat Simple_repeat 2 160 0 2 998 414 0 0 0 chr6 54143845 54143891 -95373146 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 998 225 0 0 0 chr6 54143891 54143915 -95373122 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 998 688 295 153 62 chr6 54144561 54145097 -95371940 - Lx8 LINE L1 -196 7277 6693 2 998 1064 264 56 34 chr6 54146114 54146381 -95370656 + B4 SINE B4 14 286 -6 2 998 249 109 0 0 chr6 54146700 54146746 -95370291 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 998 1407 49 48 16 chr6 54147187 54147375 -95369662 - B2_Mm2 SINE B2 0 195 2 2 998 193 354 0 10 chr6 54148814 54148911 -95368126 + L2 LINE L2 2338 2433 -986 2 998 434 291 150 6 chr6 54149196 54149376 -95367661 - Tigger7 DNA MER2_type -1 2490 2285 2 998 387 208 188 0 chr6 54149381 54149477 -95367560 - Tigger7 DNA MER2_type -2373 118 5 2 998 218 371 66 41 chr6 54151068 54151189 -95365848 - B1_Mus2 SINE Alu -21 126 3 2 998 518 344 12 0 chr6 54151189 54151254 -95365783 - ID SINE ID -140 84 18 2 998 430 196 30 30 chr6 54151255 54151355 -95365682 + PB1D9 SINE Alu 4 103 -17 2 998 180 0 0 0 chr6 54151384 54151404 -95365633 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 998 705 172 0 0 chr6 54152208 54152359 -95364678 + (CA)n Simple_repeat Simple_repeat 2 152 0 2 998 361 0 41 0 chr6 54152363 54152412 -95364625 + (CAGAGA)n Simple_repeat Simple_repeat 1 51 0 2 998 374 269 48 9 chr6 54152911 54153016 -95364021 + MER5A DNA MER1_type 1 109 -80 2 998 198 413 74 0 chr6 54154019 54154140 -95362897 - L3 LINE CR1 -1201 3288 3159 2 998 1230 105 20 26 chr6 54154442 54154637 -95362400 + B2_Mm2 SINE B2 2 195 0 2 998 301 314 12 0 chr6 54154830 54154916 -95362121 + MER58B DNA MER1_type 251 337 -4 2 998 285 292 160 0 chr6 54155899 54156005 -95361032 + MIRc SINE MIR 11 133 -135 2 998 585 42 0 0 chr6 54156102 54156174 -95360863 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 2 998 281 133 0 32 chr6 54156174 54156236 -95360801 + (CAGAGA)n Simple_repeat Simple_repeat 1 60 0 2 998 22 0 0 0 chr6 54156242 54156264 -95360773 + AT_rich Low_complexity Low_complexity 1 22 0 2 998 393 95 0 0 chr6 54156998 54157061 -95359976 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 998 272 336 16 16 chr6 54157259 54157383 -95359654 - Lx9 LINE L1 -1690 5954 5831 2 998 1507 211 115 0 chr6 54157848 54158160 -95358877 - Lx5 LINE L1 -1 7049 6702 2 998 2303 151 63 30 chr6 54158158 54158589 -95358448 + Lx5 LINE L1 5724 6168 -882 2 998 258 119 0 23 chr6 54158591 54158634 -95358403 + Lx5 LINE L1 6302 6343 -707 2 998 244 289 92 10 chr6 54159209 54159307 -95357730 + MER87 LTR ERV1 222 327 -214 2 998 22 0 0 0 chr6 54159640 54159662 -95357375 + AT_rich Low_complexity Low_complexity 1 22 0 2 998 559 258 20 71 chr6 54160224 54160420 -95356617 - B3A SINE B2 -10 188 3 2 998 230 288 99 12 chr6 54162288 54162369 -95354668 - Tigger5 DNA MER2_type -1243 1163 1076 2 998 319 95 31 31 chr6 54162774 54162839 -95354198 + (CATA)n Simple_repeat Simple_repeat 2 66 0 2 998 312 183 0 77 chr6 54162839 54162904 -95354133 + HAL1-3A_ME LINE L1 1975 2034 -824 2 998 307 288 34 50 chr6 54163405 54163584 -95353453 + CT-rich Low_complexity Low_complexity 3 178 0 2 998 21 36 0 0 chr6 54164399 54164427 -95352610 + AT_rich Low_complexity Low_complexity 1 28 0 2 998 654 170 26 9 chr6 54167593 54167706 -95349331 + B1_Mur2 SINE Alu 35 149 0 2 998 432 0 0 0 chr6 54167897 54167945 -95349092 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 998 279 286 13 0 chr6 54169199 54169276 -95347761 - L1MB3 LINE L1 -8 6175 6098 2 998 201 353 74 25 chr6 54170171 54170293 -95346744 + MIRb SINE MIR 49 176 -92 2 998 188 261 32 54 chr6 54170824 54170917 -95346120 - MIR3 SINE MIR -31 177 87 2 998 273 57 0 0 chr6 54171643 54171678 -95345359 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 998 480 18 0 0 chr6 54171681 54171738 -95345299 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 998 2021 184 63 8 chr6 54172050 54172449 -95344588 - MTC LTR MaLR 0 421 1 2 998 1223 122 97 10 chr6 54172462 54172669 -95344368 - URR1B DNA MER1_type 0 225 1 2 998 310 267 81 84 chr6 54177102 54177303 -95339734 - LTR33A_ LTR ERVL -306 209 35 2 998 639 171 6 12 chr6 54177616 54177776 -95339261 + (CA)n Simple_repeat Simple_repeat 1 159 0 2 998 294 200 0 0 chr6 54178608 54178658 -95338379 - MER5B DNA MER1_type -3 175 126 2 998 205 354 62 0 chr6 54178766 54178862 -95338175 - MER5B DNA MER1_type -76 102 1 2 998 180 0 0 0 chr6 54178980 54179000 -95338037 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 998 864 309 109 35 chr6 54179354 54179833 -95337204 - Charlie1a DNA MER1_type 0 1455 942 2 998 645 305 107 8 chr6 54180234 54180495 -95336542 - MER2 DNA MER2_type -58 287 1 2 998 197 146 73 0 chr6 54180531 54180572 -95336465 - MIRc SINE MIR -118 150 107 2 998 238 240 32 0 chr6 54180792 54180866 -95336171 + MLT1K LTR MaLR 167 229 -381 2 998 187 241 138 46 chr6 54181176 54181263 -95335774 + L3 LINE CR1 2151 2245 -2244 2 998 2815 194 0 10 chr6 54183269 54183789 -95333248 + ORR1A4-int LTR MaLR 126 640 -1323 2 998 299 116 0 0 chr6 54183789 54183832 -95333205 + MERVL_2A-int LTR ERVL 5719 5761 0 2 998 7555 127 26 92 chr6 54183836 54185276 -95331761 + ORR1A4-int LTR MaLR 619 1963 0 2 998 1612 108 66 123 chr6 54185276 54185625 -95331412 + ORR1A4 LTR MaLR 1 329 0 2 998 293 206 0 87 chr6 54185718 54185787 -95331250 + ID4_ SINE ID 4 66 -17 2 998 387 0 0 0 chr6 54185831 54185874 -95331163 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 998 343 228 182 59 chr6 54188127 54188304 -95328733 - MLT1E2 LTR MaLR -388 265 59 2 998 261 289 0 0 chr6 54189025 54189184 -95327853 + (CA)n Simple_repeat Simple_repeat 1 159 0 2 998 399 123 0 0 chr6 54189234 54189315 -95327722 + (TTTTTG)n Simple_repeat Simple_repeat 2 82 0 2 998 268 365 37 11 chr6 54190286 54190477 -95326560 - LTR78 LTR ERV1 -117 1187 992 2 998 2342 113 3 0 chr6 54190730 54191056 -95325981 - ORR1A2 LTR MaLR 0 327 1 2 998 2022 187 73 8 chr6 54191210 54191592 -95325445 - MTD LTR MaLR 0 419 13 2 998 1450 309 62 33 chr6 54193322 54193988 -95323049 - Lx8 LINE L1 -298 7175 6491 2 998 188 35 35 0 chr6 54194950 54194979 -95322058 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 998 315 0 0 0 chr6 54195101 54195136 -95321901 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 998 375 23 0 0 chr6 54195136 54195179 -95321858 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 998 240 260 92 23 chr6 54195763 54195893 -95321144 - L1M5 LINE L1 -225 5899 5761 2 998 1032 291 66 30 chr6 54197505 54198059 -95318978 + L1MB5 LINE L1 4830 5411 -751 2 998 841 272 66 122 chr6 54198078 54198471 -95318566 + MTE2a LTR MaLR 7 377 -2 2 998 1040 297 32 19 chr6 54198487 54198861 -95318176 + L1MB5 LINE L1 5486 5864 -310 2 998 969 269 10 5 chr6 54199424 54199633 -95317404 + B3 SINE B2 7 216 0 2 998 257 291 136 68 chr6 54199755 54199917 -95317120 - MLT1I LTR MaLR -224 187 15 2 998 304 338 41 152 chr6 54200342 54200472 -95316565 + MLT1D LTR MaLR 1 107 -398 2 998 689 258 54 11 chr6 54200472 54200656 -95316381 - B3A SINE B2 -6 192 1 2 998 304 338 41 152 chr6 54200656 54200769 -95316268 + MLT1D LTR MaLR 108 217 -288 2 998 1073 144 110 30 chr6 54200867 54201067 -95315970 + URR1B DNA MER1_type 1 216 -9 2 998 258 258 133 10 chr6 54201091 54201189 -95315848 + MLT1D LTR MaLR 377 486 -19 2 998 278 0 54 0 chr6 54201259 54201296 -95315741 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 998 232 321 48 42 chr6 54201888 54202054 -95314983 - L2b LINE L2 -212 3163 2997 2 998 295 302 115 31 chr6 54202272 54202402 -95314635 - MLT1I LTR MaLR -3 408 268 2 998 442 224 178 0 chr6 54202806 54202913 -95314124 + RSINE1 SINE B4 11 136 -29 2 998 516 228 99 40 chr6 54202913 54203064 -95313973 - RSINE1 SINE B4 -4 161 2 2 998 838 234 30 0 chr6 54203242 54203443 -95313594 + B3 SINE B2 2 208 -8 2 998 245 294 43 0 chr6 54204207 54204288 -95312749 + ID4 SINE ID 9 92 -60 2 998 439 325 18 26 chr6 54209236 54209427 -95307610 + MIR3 SINE MIR 16 208 -68 2 998 1887 190 61 11 chr6 54211539 54211933 -95305104 - MTD LTR MaLR -14 405 1 2 998 1262 87 66 0 chr6 54212518 54212701 -95304336 - B2_Mm2 SINE B2 0 195 1 2 998 240 329 24 35 chr6 54212702 54212787 -95304250 + B4 SINE B4 25 108 -184 2 998 201 321 27 45 chr6 54212858 54212969 -95304068 - MIR SINE MIR -131 131 23 2 998 384 252 0 0 chr6 54213046 54213185 -95303852 + (TG)n Simple_repeat Simple_repeat 2 140 0 2 998 669 63 0 0 chr6 54213185 54213280 -95303757 + (GA)n Simple_repeat Simple_repeat 1 95 0 2 998 435 272 68 112 chr6 54213286 54213580 -95303457 - B4 SINE B4 -10 282 2 2 998 375 78 0 0 chr6 54214403 54214454 -95302583 + (A)n Simple_repeat Simple_repeat 1 51 0 3 998 613 82 21 0 chr6 54216613 54216710 -95300327 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 3 998 183 294 106 45 chr6 54217191 54217323 -95299714 - L2 LINE L2 -457 2962 2823 3 998 267 304 31 42 chr6 54217647 54217743 -95299294 + MER5A DNA MER1_type 13 107 -82 3 998 495 0 0 0 chr6 54218426 54218481 -95298556 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 998 593 39 0 0 chr6 54219461 54219538 -95297499 - B1_Mus2 SINE Alu 0 147 71 3 998 334 311 75 37 chr6 54219577 54219764 -95297273 + MIR SINE MIR 67 260 -2 3 998 373 339 90 17 chr6 54219781 54219958 -95297079 + MER20 DNA MER1_type 30 219 0 3 998 349 297 48 27 chr6 54221490 54221651 -95295386 + MIR SINE MIR 54 235 -33 3 998 198 160 0 0 chr6 54222536 54222586 -95294451 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 998 424 306 34 80 chr6 54225796 54226202 -95290835 - ORR1E LTR MaLR 0 379 2 3 998 1301 234 16 29 chr6 54226284 54226596 -95290441 - Lx5 LINE L1 0 7050 6743 3 998 1079 172 42 28 chr6 54226621 54226836 -95290201 + URR1B DNA MER1_type 8 225 0 3 998 236 315 97 26 chr6 54227454 54227568 -95289469 + MER20 DNA MER1_type 2 123 -96 3 998 530 285 54 63 chr6 54228604 54228825 -95288212 + MER20 DNA MER1_type 1 219 0 3 998 360 318 65 39 chr6 54230721 54230875 -95286162 - L1MEg LINE L1 -3569 2577 2420 3 998 420 349 79 34 chr6 54231623 54231914 -95285123 - L1MEg LINE L1 -4756 1486 1183 3 998 253 254 113 0 chr6 54232196 54232267 -95284770 - ID4 SINE ID 0 83 5 3 998 24 0 0 0 chr6 54232304 54232328 -95284709 + AT_rich Low_complexity Low_complexity 1 24 0 3 998 516 338 7 0 chr6 54232371 54232522 -95284515 + Lx8 LINE L1 7178 7329 -144 3 998 936 79 0 28 chr6 54233810 54233954 -95283083 - L1Md_F2 LINE L1 -3 6579 6440 3 998 281 68 0 22 chr6 54233966 54234011 -95283026 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 998 1207 36 0 0 chr6 54234011 54234150 -95282887 - B1_Mus2 SINE Alu -8 139 1 3 998 335 203 17 0 chr6 54234428 54234487 -95282550 - 5S rRNA rRNA -60 61 2 3 998 1185 106 0 0 chr6 54235180 54235360 -95281677 + (CTATG)n Simple_repeat Simple_repeat 1 180 0 3 998 359 326 40 32 chr6 54238239 54238486 -95278551 + L1MB1 LINE L1 5826 6074 -94 3 998 297 234 65 98 chr6 54238494 54238617 -95278420 + B1_Mur1 SINE Alu 19 137 -12 3 998 371 230 29 100 chr6 54238725 54238865 -95278172 + B1_Mur1 SINE Alu 19 148 -1 3 998 288 0 0 0 chr6 54239884 54239916 -95277121 + (A)n Simple_repeat Simple_repeat 1 32 0 3 998 223 156 44 0 chr6 54240463 54240508 -95276529 + (TTATA)n Simple_repeat Simple_repeat 4 50 0 3 998 209 293 75 82 chr6 54240666 54240800 -95276237 - L2c LINE L2 -7 3380 3248 3 998 2574 147 72 41 chr6 54241026 54241537 -95275500 - RLTR11A2 LTR ERVK 0 527 1 3 998 577 268 42 58 chr6 54241537 54241727 -95275310 - MTEb LTR MaLR -6 373 187 3 998 235 49 49 0 chr6 54242980 54243021 -95274016 + (CCCCCA)n Simple_repeat Simple_repeat 3 45 0 3 998 2058 255 15 13 chr6 54243660 54244125 -95272912 + Lx6 LINE L1 6995 7460 0 3 998 459 290 76 0 chr6 54244147 54244278 -95272759 + RSINE1 SINE B4 4 144 -21 3 998 23 0 0 0 chr6 54244297 54244320 -95272717 + AT_rich Low_complexity Low_complexity 1 23 0 3 998 495 234 0 11 chr6 54244332 54244427 -95272610 + B4A SINE B4 4 97 -195 3 998 315 0 0 0 chr6 54244538 54244573 -95272464 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 998 751 289 60 52 chr6 54244603 54245040 -95271997 - RLTR11A2 LTR ERVK -60 381 1 3 998 357 24 0 0 chr6 54245157 54245199 -95271838 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 998 304 284 63 18 chr6 54246317 54246428 -95270609 + PB1D10 SINE Alu 1 116 -1 3 998 3566 13 5 0 chr6 54246451 54246845 -95270192 - MTA_Mm LTR MaLR 0 396 1 3 998 197 347 64 39 chr6 54246860 54247016 -95270021 - MIRb SINE MIR -23 245 86 3 998 1723 202 52 30 chr6 54248339 54248752 -95268285 - MTC-int LTR MaLR -747 511 107 3 998 1527 205 58 56 chr6 54248796 54249209 -95267828 - MTD LTR MaLR 0 419 6 3 998 394 275 5 43 chr6 54252684 54252928 -95264109 + G-rich Low_complexity Low_complexity 1 234 0 3 998 295 349 59 4 chr6 54253375 54253614 -95263423 - L1MD3 LINE L1 0 7995 7744 3 998 381 286 6 80 chr6 54253644 54253819 -95263218 + RSINE1 SINE B4 4 165 0 3 998 25 0 0 0 chr6 54253824 54253849 -95263188 + AT_rich Low_complexity Low_complexity 1 25 0 3 998 451 319 12 36 chr6 54253857 54254023 -95263014 + RSINE1 SINE B4 4 165 0 3 998 757 279 27 22 chr6 54254598 54254781 -95262256 + B3A SINE B2 2 185 -13 3 998 618 297 146 0 chr6 54254986 54255205 -95261832 + MLT1A0 LTR MaLR 98 348 -17 3 998 409 154 0 0 chr6 54255207 54255272 -95261765 - MTC LTR MaLR 0 421 357 3 998 2305 169 9 75 chr6 54255268 54255708 -95261329 - MTC LTR MaLR -10 411 1 3 998 185 274 99 59 chr6 54255801 54255902 -95261135 + L2a LINE L2 3285 3389 -37 3 998 269 321 12 0 chr6 54257349 54257430 -95259607 + ID4_ SINE ID 2 83 0 3 998 627 259 44 0 chr6 54257468 54257603 -95259434 + RSINE1 SINE B4 3 143 -22 3 998 462 91 0 0 chr6 54257605 54257682 -95259355 + (CA)n Simple_repeat Simple_repeat 1 77 0 3 998 22 0 0 0 chr6 54257685 54257707 -95259330 + AT_rich Low_complexity Low_complexity 1 22 0 3 998 554 207 107 70 chr6 54258086 54258273 -95258764 - B3A SINE B2 -4 194 1 3 998 296 295 87 26 chr6 54258466 54258581 -95258456 - MLT1L LTR MaLR -326 284 163 3 998 257 111 37 0 chr6 54258731 54258785 -95258252 + (TCTCTG)n Simple_repeat Simple_repeat 1 56 0 3 998 402 207 52 35 chr6 54258788 54258903 -95258134 - Lx6 LINE L1 -4 7456 7340 3 998 1346 227 15 7 chr6 54258922 54259193 -95257844 + ORR1C1 LTR MaLR 55 327 -51 3 998 519 148 0 0 chr6 54259196 54259284 -95257753 + (GGGGA)n Simple_repeat Simple_repeat 3 90 0 3 998 5761 214 87 21 chr6 54259300 54260543 -95256494 - Lx6 LINE L1 -136 7324 6000 3 998 2218 189 0 12 chr6 54260870 54261272 -95255765 - Lx6 LINE L1 -1477 5983 5587 3 998 251 219 236 49 chr6 54261841 54261985 -95255052 + MIRc SINE MIR 4 174 -94 3 998 257 286 86 46 chr6 54262773 54263033 -95254004 - L1M5 LINE L1 -617 5577 5309 3 998 693 276 135 26 chr6 54263107 54263456 -95253581 + L1_Mur3 LINE L1 4617 5055 -1088 3 124 762 299 4 8 chr6 54263706 54263967 -95253070 + L1_Mur3 LINE L1 5045 5337 -966 3 999 427 304 9 0 chr6 54264046 54264158 -95252879 - PB1D7 SINE Alu -7 113 1 3 999 284 158 18 0 chr6 54264340 54264397 -95252640 + CT-rich Low_complexity Low_complexity 3 60 0 3 999 240 328 0 0 chr6 54264973 54265037 -95252000 + tRNA-Ala-GCY_ tRNA tRNA 1 64 -11 3 999 325 248 71 53 chr6 54265633 54265758 -95251279 - MTEb LTR MaLR -8 371 238 3 999 250 262 170 14 chr6 54265771 54265918 -95251119 - MTEb LTR MaLR -189 170 1 3 999 587 227 39 10 chr6 54266350 54266532 -95250505 - B3A SINE B2 -3 192 1 3 999 276 211 0 0 chr6 54267072 54267143 -95249894 + (ATTG)n Simple_repeat Simple_repeat 2 72 0 3 999 309 385 23 23 chr6 54267180 54267353 -95249684 - MIRb SINE MIR -14 254 82 3 999 186 240 60 0 chr6 54267649 54267699 -95249338 + MIR SINE MIR 65 117 -91 3 999 237 254 151 42 chr6 54268349 54268468 -95248569 - RLTR1B LTR ERV1 -333 179 48 3 999 321 308 100 54 chr6 54268801 54269041 -95247996 + MIR SINE MIR 6 256 -6 3 999 477 0 0 0 chr6 54269801 54269854 -95247183 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 999 873 275 147 31 chr6 54269854 54270085 -95246952 + MTEa LTR MaLR 24 272 -107 3 999 1952 188 46 29 chr6 54270085 54270497 -95246540 + MTD LTR MaLR 1 419 0 3 999 873 275 147 31 chr6 54270497 54270584 -95246453 + MTEa LTR MaLR 273 379 0 3 999 188 307 146 70 chr6 54270766 54271151 -95245886 - L2 LINE L2 -432 2987 2574 3 999 515 254 84 8 chr6 54271221 54271340 -95245697 + MLT1A0 LTR MaLR 198 325 -40 3 999 348 232 61 0 chr6 54271362 54271444 -95245593 - MTE2a LTR MaLR 0 379 293 3 999 1069 201 131 32 chr6 54271444 54271940 -95245097 + RMER4B LTR ERVK 1 585 0 3 999 733 244 133 10 chr6 54271999 54272202 -95244835 - MTD LTR MaLR -24 395 168 3 999 722 213 67 0 chr6 54272269 54272419 -95244618 - MTD LTR MaLR -257 162 3 3 999 461 224 57 75 chr6 54272441 54272548 -95244489 - MTE2a LTR MaLR -115 264 160 3 999 280 214 36 0 chr6 54272576 54272632 -95244405 - MTE2a LTR MaLR -320 59 2 3 999 251 224 0 0 chr6 54272632 54272676 -95244361 + MLT1A0 LTR MaLR 364 407 -1 3 999 1607 228 51 3 chr6 54272798 54273150 -95243887 - ORR1D2 LTR MaLR 0 370 2 3 999 629 181 7 0 chr6 54273706 54273844 -95243193 + (TA)n Simple_repeat Simple_repeat 2 140 0 3 999 297 0 0 0 chr6 54273844 54273877 -95243160 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 999 276 254 0 88 chr6 54273938 54274044 -95242993 + ID4_ SINE ID 8 103 -49 3 999 504 0 0 0 chr6 54275144 54275200 -95241837 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 999 201 284 0 0 chr6 54275693 54275767 -95241270 + GA-rich Low_complexity Low_complexity 2 75 0 3 999 687 203 0 36 chr6 54278410 54278443 -95238594 - MTC LTR MaLR -179 242 212 3 999 931 88 57 28 chr6 54278443 54278584 -95238453 - B1_Mus1 SINE Alu -1 147 3 3 999 687 203 0 36 chr6 54278584 54278688 -95238349 - MTC LTR MaLR -210 211 110 3 999 261 0 0 0 chr6 54279804 54279833 -95237204 + (T)n Simple_repeat Simple_repeat 1 29 0 3 999 249 159 0 0 chr6 54281650 54281694 -95235343 + (CACCAT)n Simple_repeat Simple_repeat 6 49 0 3 999 243 0 0 0 chr6 54281710 54281737 -95235300 + (A)n Simple_repeat Simple_repeat 1 27 0 3 999 210 237 163 71 chr6 54283972 54284113 -95232924 + MIR3 SINE MIR 41 194 -14 3 999 740 279 133 8 chr6 54284324 54284580 -95232457 + B4 SINE B4 1 288 -4 3 999 976 85 14 25 chr6 54284583 54284862 -95232175 + (CA)n Simple_repeat Simple_repeat 1 275 0 3 999 761 223 16 19 chr6 54285157 54285332 -95231705 + ID_B1 SINE B4 48 224 -68 4 999 224 59 29 0 chr6 54285556 54285590 -95231447 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 999 282 253 34 22 chr6 54285984 54286073 -95230964 - LTR41 LTR ERVL -11 757 668 4 999 313 331 96 36 chr6 54286102 54286268 -95230769 - LTR41 LTR ERVL -157 611 436 4 999 582 188 0 0 chr6 54286822 54286987 -95230050 + CT-rich Low_complexity Low_complexity 1 165 0 4 999 2664 114 19 12 chr6 54287215 54287631 -95229406 + RLTR31_Mur LTR ERVK 135 553 0 4 999 1205 210 201 26 chr6 54287834 54288197 -95228840 + MTD LTR MaLR 1 405 -2 4 999 31 44 0 0 chr6 54288238 54288283 -95228754 + AT_rich Low_complexity Low_complexity 1 45 0 4 999 5306 120 31 17 chr6 54289943 54290818 -95226219 + RMER17D LTR ERVK 1 887 -2 4 999 919 43 9 0 chr6 54291502 54291618 -95225419 - B1_Mm SINE Alu -9 138 22 4 999 323 268 239 29 chr6 54292770 54293008 -95224029 - L1MD3 LINE L1 -1977 6018 5731 4 999 182 108 54 0 chr6 54293024 54293061 -95223976 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 999 509 291 85 39 chr6 54293165 54293472 -95223565 - L1MD3 LINE L1 -567 5612 5292 4 999 370 146 87 10 chr6 54293455 54293559 -95223478 - Lx9 LINE L1 0 7644 7533 4 999 380 20 0 20 chr6 54293559 54293609 -95223428 + (CATA)n Simple_repeat Simple_repeat 1 49 0 4 999 237 229 0 0 chr6 54293932 54293980 -95223057 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 999 2856 154 40 56 chr6 54294002 54294572 -95222465 - RLTR31_Mm LTR ERVK 0 561 1 4 999 3206 243 61 22 chr6 54294609 54295456 -95221581 - Lx9 LINE L1 -264 7380 6501 4 999 2759 287 114 67 chr6 54295508 54295762 -95221275 - Lx9 LINE L1 -1 7472 7210 4 999 1020 45 0 0 chr6 54295762 54295896 -95221141 + (TC)n Simple_repeat Simple_repeat 1 134 0 4 999 2759 264 123 59 chr6 54295896 54297004 -95220033 - Lx9 LINE L1 -307 7337 6159 4 999 180 0 0 0 chr6 54297209 54297229 -95219808 + (A)n Simple_repeat Simple_repeat 1 20 0 4 999 235 254 0 60 chr6 54297333 54297400 -95219637 + tRNA-Gly-GGG tRNA tRNA 4 66 -8 4 999 196 317 11 58 chr6 54297556 54297643 -95219394 + L2 LINE L2 2412 2494 -925 4 999 432 0 0 0 chr6 54298952 54299000 -95218037 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 999 519 327 57 22 chr6 54299007 54299235 -95217802 - B4A SINE B4 -55 237 2 4 999 720 240 48 27 chr6 54299449 54299637 -95217400 + ORR1D2 LTR MaLR 1 192 -178 4 999 327 185 15 0 chr6 54299637 54299702 -95217335 + ORR1D2 LTR MaLR 354 419 0 4 999 4174 139 36 3 chr6 54299875 54300532 -95216505 - RMER1B Other Other 0 1066 388 4 999 3517 30 0 2 chr6 54301012 54301409 -95215628 + MTA_Mm LTR MaLR 1 396 0 4 999 383 323 233 9 chr6 54301595 54301808 -95215229 - B4A SINE B4 -6 286 1 4 999 1123 324 139 18 chr6 54302539 54303093 -95213944 + MER82 DNA MER2_type 33 653 0 4 999 207 326 0 0 chr6 54303550 54303599 -95213438 + MIRb SINE MIR 133 181 -87 4 999 216 111 0 0 chr6 54304170 54304206 -95212831 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 999 766 183 0 0 chr6 54305077 54305197 -95211840 + B1_Mur3 SINE Alu 2 121 -28 4 999 181 57 57 0 chr6 54305514 54305549 -95211488 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 4 999 544 78 0 49 chr6 54305549 54305630 -95211407 - B1_Mus2 SINE Alu 0 147 71 4 999 316 230 69 13 chr6 54306158 54306244 -95210793 + RLTR11A2 LTR ERVK 39 124 -403 4 999 906 106 17 80 chr6 54306246 54306421 -95210616 - RLTR10 LTR ERVK 0 390 227 4 999 2393 33 23 13 chr6 54306550 54306860 -95210177 - RLTR10 LTR ERVK -77 313 1 4 999 8880 27 0 2 chr6 54306862 54307859 -95209178 - RLTR10-int LTR ERVK -3 1984 990 4 999 7564 25 1 75 chr6 54307953 54308939 -95208098 - RLTR10-int LTR ERVK -1034 953 41 4 999 895 112 17 80 chr6 54308949 54309124 -95207913 - RLTR10 LTR ERVK 0 390 227 4 999 2383 36 23 13 chr6 54309253 54309563 -95207474 - RLTR10 LTR ERVK -77 313 1 4 999 2204 152 51 15 chr6 54309567 54309962 -95207075 + RLTR11A2 LTR ERVK 119 527 0 4 999 2420 176 51 20 chr6 54310893 54311402 -95205635 - RLTR11A2 LTR ERVK 0 527 3 4 999 290 252 89 83 chr6 54311489 54311658 -95205379 + L1MC LINE L1 5700 5869 -2013 4 999 643 209 131 25 chr6 54313699 54313884 -95203153 - MTD LTR MaLR -15 404 219 4 999 619 237 30 0 chr6 54314338 54314469 -95202568 + B1F SINE Alu 12 146 -3 4 999 574 148 83 9 chr6 54315740 54315849 -95201188 + MER44A DNA MER2_type 98 214 -125 4 999 263 125 0 64 chr6 54316206 54316300 -95200737 + (GTTTG)n Simple_repeat Simple_repeat 2 89 0 4 999 1109 182 11 0 chr6 54316345 54316526 -95200511 - B3 SINE B2 0 216 34 4 999 257 307 122 30 chr6 54316750 54316881 -95200156 - MIRb SINE MIR -34 234 92 4 999 227 300 16 16 chr6 54317573 54317634 -95199403 + RSINE1 SINE B4 67 127 -38 4 999 288 0 0 0 chr6 54317653 54317685 -95199352 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 999 277 254 0 0 chr6 54317726 54317789 -95199248 + GA-rich Low_complexity Low_complexity 3 65 0 4 999 249 83 0 0 chr6 54318010 54318046 -95198991 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 4 999 286 132 24 24 chr6 54319608 54319693 -95197344 + (CAGAGA)n Simple_repeat Simple_repeat 2 86 0 4 999 342 0 0 0 chr6 54319824 54319862 -95197175 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 999 301 179 0 50 chr6 54320177 54320277 -95196760 + GA-rich Low_complexity Low_complexity 4 98 0 4 999 181 53 25 50 chr6 54320971 54321011 -95196026 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 999 295 298 9 71 chr6 54321544 54321656 -95195381 - Tigger5 DNA MER2_type -2212 194 90 4 999 294 247 128 12 chr6 54321641 54321727 -95195310 + PB1D10 SINE Alu 20 115 -2 4 999 420 257 65 28 chr6 54321725 54321833 -95195204 - Tigger5 DNA MER2_type -2294 112 1 4 999 239 189 57 0 chr6 54322124 54322177 -95194860 - MLT1E2 LTR MaLR -440 187 132 4 999 244 320 10 20 chr6 54322354 54322456 -95194581 + L1M5 LINE L1 5818 5918 -261 4 999 273 286 36 109 chr6 54322736 54322846 -95194191 + MT2B LTR ERVL 155 256 -345 4 999 623 203 87 24 chr6 54322764 54322890 -95194147 + B1_Mur4 SINE Alu 12 145 -5 4 999 213 94 0 0 chr6 54323554 54323586 -95193451 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 999 768 167 115 18 chr6 54323708 54323873 -95193164 + ORR1D1 LTR MaLR 1 181 -193 4 999 888 154 17 0 chr6 54323916 54324091 -95192946 + CT-rich Low_complexity Low_complexity 2 179 0 4 999 202 188 0 0 chr6 54324092 54324124 -95192913 + C-rich Low_complexity Low_complexity 3 34 0 4 999 541 199 151 22 chr6 54324124 54324263 -95192774 + ORR1D1 LTR MaLR 174 330 -54 4 999 683 196 6 0 chr6 54324503 54324666 -95192371 + GA-rich Low_complexity Low_complexity 2 165 0 4 999 1835 110 83 3 chr6 54324719 54325019 -95192018 + L1_Mur3 LINE L1 3911 4234 -1646 4 999 1772 121 8 0 chr6 54325047 54325312 -95191725 + Lx4A LINE L1 5591 5857 -1201 4 999 785 206 70 10 chr6 54325319 54325520 -95191517 + Lx5 LINE L1 6827 7039 -11 4 999 403 100 0 48 chr6 54325532 54325595 -95191442 + ORR1C2 LTR MaLR 325 384 0 4 999 555 66 0 0 chr6 54325737 54325813 -95191224 + (TCC)n Simple_repeat Simple_repeat 2 77 0 4 999 207 88 0 0 chr6 54325814 54325848 -95191189 + (CCA)n Simple_repeat Simple_repeat 1 34 0 4 999 679 306 91 32 chr6 54325863 54326116 -95190921 + B4 SINE B4 2 269 -23 4 999 486 0 0 0 chr6 54326116 54326170 -95190867 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 999 282 237 52 31 chr6 54326241 54326337 -95190700 - Tigger7 DNA MER2_type -251 2240 2143 4 999 918 261 146 11 chr6 54326345 54326612 -95190425 - Tigger7 DNA MER2_type -2188 303 1 4 999 601 284 158 20 chr6 54326632 54326942 -95190095 + L1MD3 LINE L1 6886 7214 -781 4 999 6629 119 75 29 chr6 54326948 54328089 -95188948 + Lx2 LINE L1 5804 6996 -1 4 999 3752 39 0 0 chr6 54328127 54328565 -95188472 - L1Md_F2 LINE L1 -548 6034 5597 4 999 2455 64 0 3 chr6 54328565 54328879 -95188158 + L1Md_F2 LINE L1 6258 6570 -12 4 999 184 71 71 0 chr6 54328915 54328957 -95188080 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 4 999 2037 199 223 19 chr6 54329434 54330039 -95186998 + RMER1B Other Other 15 1060 -6 4 999 1450 254 87 20 chr6 54330409 54330855 -95186182 - RCHARR1 DNA MER1_type -11 963 488 4 999 996 274 102 0 chr6 54331030 54331333 -95185704 - RCHARR1 DNA MER1_type -495 479 146 4 999 360 0 0 0 chr6 54331352 54331392 -95185645 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 999 276 202 116 16 chr6 54331402 54331523 -95185514 + Lx9 LINE L1 7499 7631 -13 4 999 26 64 0 0 chr6 54332175 54332222 -95184815 + AT_rich Low_complexity Low_complexity 1 47 0 4 999 243 114 0 0 chr6 54333107 54333151 -95183886 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 999 543 281 91 99 chr6 54333745 54334208 -95182829 - RLTR11A2 LTR ERVK -28 499 41 4 999 241 276 35 0 chr6 54334521 54334579 -95182458 + RMER15 LTR ERVL 1 60 -515 4 999 1383 229 206 30 chr6 54334602 54335034 -95182003 + RMER15 LTR ERVL 27 534 -41 4 999 260 344 61 31 chr6 54335459 54335877 -95181160 + L1ME1 LINE L1 5703 6133 -46 4 999 222 37 0 0 chr6 54335924 54335951 -95181086 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 4 999 388 211 66 0 chr6 54335964 54336040 -95180997 + B1F1 SINE Alu 1 81 -68 4 999 298 315 69 30 chr6 54336040 54336094 -95180943 + B4A SINE B4 86 220 -72 4 999 262 384 52 36 chr6 54336716 54336908 -95180129 - MIR3 SINE MIR -13 195 1 4 999 414 0 0 0 chr6 54336918 54336964 -95180073 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 999 225 0 0 0 chr6 54337078 54337103 -95179934 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 999 338 320 48 66 chr6 54337824 54337991 -95179046 + B4 SINE B4 1 164 -128 4 999 249 323 60 77 chr6 54338775 54338943 -95178094 + LTR78 LTR ERV1 452 616 -688 4 999 330 307 43 9 chr6 54339009 54339124 -95177913 - MLT1C LTR MaLR 0 467 349 4 999 712 274 44 18 chr6 54339214 54339441 -95177596 - MLT1C LTR MaLR -234 233 1 4 999 234 0 0 0 chr6 54339691 54339717 -95177320 + (GGA)n Simple_repeat Simple_repeat 3 28 0 4 999 1103 90 7 0 chr6 54339717 54339861 -95177176 + B1_Mus2 SINE Alu 3 147 0 4 999 659 90 10 0 chr6 54339867 54339967 -95177070 + (GAA)n Simple_repeat Simple_repeat 2 102 0 4 999 216 281 0 0 chr6 54340019 54340076 -95176961 + (CATA)n Simple_repeat Simple_repeat 4 60 0 4 999 742 264 21 21 chr6 54340160 54340346 -95176691 + B4 SINE B4 43 228 -64 4 999 383 193 77 115 chr6 54340395 54340499 -95176538 + B4 SINE B4 215 292 0 4 999 267 140 0 0 chr6 54340506 54340556 -95176481 + (CAGA)n Simple_repeat Simple_repeat 4 53 0 5 999 759 272 60 0 chr6 54340772 54340956 -95176081 - ID_B1 SINE B4 -28 196 2 5 999 2156 130 14 8 chr6 54341343 54341700 -95175337 - RLTR15 LTR ERVK 0 359 1 5 999 236 146 84 12 chr6 54342035 54342107 -95174930 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 5 999 312 27 0 0 chr6 54342107 54342144 -95174893 + (CATA)n Simple_repeat Simple_repeat 2 38 0 5 999 236 146 84 12 chr6 54342144 54342154 -95174883 + (TAGA)n Simple_repeat Simple_repeat 1 10 0 5 999 912 190 12 12 chr6 54342393 54342563 -95174474 - MTC LTR MaLR 0 421 252 5 999 1200 158 0 5 chr6 54342559 54342756 -95174281 - MTC-int LTR MaLR -673 585 390 5 999 1217 52 0 22 chr6 54342764 54342942 -95174095 + (TTC)n Simple_repeat Simple_repeat 3 176 0 5 999 484 160 0 20 chr6 54342948 54343050 -95173987 + CT-rich Low_complexity Low_complexity 1 100 0 5 999 1383 171 144 18 chr6 54343084 54343417 -95173620 - MTC-int LTR MaLR -872 386 12 5 999 335 290 104 36 chr6 54343392 54343614 -95173423 + MLT1F LTR MaLR 281 517 -31 5 999 555 219 70 106 chr6 54343810 54344009 -95173028 - MER53 DNA hAT 0 193 2 5 999 479 266 156 0 chr6 54344218 54344410 -95172627 - Tigger7 DNA MER2_type -11 2480 2259 5 999 856 225 77 39 chr6 54344851 54345059 -95171978 + MTD LTR MaLR 204 419 0 5 999 390 129 0 0 chr6 54345530 54345592 -95171445 + (CATA)n Simple_repeat Simple_repeat 3 64 0 5 999 1311 98 33 0 chr6 54345771 54345954 -95171083 + B2_Mm2 SINE B2 1 189 -6 5 999 268 107 71 0 chr6 54345956 54346012 -95171025 + GA-rich Low_complexity Low_complexity 5 64 0 5 999 226 274 271 30 chr6 54346012 54346215 -95170822 + Lx8 LINE L1 7214 7465 -8 5 999 404 299 30 54 chr6 54346609 54346775 -95170262 + MIR SINE MIR 31 192 -70 5 999 515 94 31 10 chr6 54346775 54346872 -95170165 + (GA)n Simple_repeat Simple_repeat 2 100 0 5 999 229 367 45 9 chr6 54347047 54347157 -95169880 - ORR1E LTR MaLR -225 134 21 5 999 2741 123 8 0 chr6 54347720 54348111 -95168926 + ORR1B1 LTR MaLR 1 394 0 5 999 618 300 128 24 chr6 54351332 54351629 -95165408 + MER2 DNA MER2_type 17 344 -1 5 999 528 129 0 0 chr6 54352239 54352340 -95164697 + (TG)n Simple_repeat Simple_repeat 1 101 0 5 999 216 0 0 0 chr6 54353100 54353124 -95163913 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 5 999 875 328 111 17 chr6 54353548 54353970 -95163067 + MLT2B1 LTR ERVL 1 462 -58 5 999 1870 115 18 90 chr6 54353976 54354376 -95162661 + RMER17C LTR ERVK 1 371 -39 5 999 792 0 0 0 chr6 54354389 54354477 -95162560 + (TTC)n Simple_repeat Simple_repeat 2 89 0 5 999 3336 179 53 108 chr6 54354998 54355160 -95161877 + RLTR40 LTR ERVK 1 152 -665 5 999 2306 127 111 5 chr6 54355160 54355557 -95161480 + BGLII_B LTR ERVK 2 440 -1 5 999 3336 179 53 108 chr6 54355557 54356045 -95160992 + RLTR40 LTR ERVK 153 622 -195 5 999 324 48 0 0 chr6 54356045 54356087 -95160950 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 999 3336 179 53 108 chr6 54356087 54356286 -95160751 + RLTR40 LTR ERVK 623 804 -13 5 999 839 206 12 12 chr6 54356298 54356470 -95160567 - B3A SINE B2 -22 176 5 5 999 236 250 0 0 chr6 54356597 54356645 -95160392 + CT-rich Low_complexity Low_complexity 5 52 0 5 999 336 83 0 0 chr6 54356645 54356693 -95160344 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 999 878 292 122 0 chr6 54356695 54356948 -95160089 - B4A SINE B4 -8 284 1 5 999 2871 58 31 61 chr6 54357719 54358143 -95158894 - RLTR10A LTR ERVK 0 411 1 5 999 231 338 43 81 chr6 54359147 54359308 -95157729 - LTR81C LTR ERV1? -244 909 755 5 999 244 336 64 24 chr6 54359772 54359897 -95157140 - MIRb SINE MIR -81 187 58 5 999 345 258 41 10 chr6 54360578 54360676 -95156361 - MER5A1 DNA MER1_type -59 107 7 5 999 633 325 97 25 chr6 54360929 54361207 -95155830 + Tigger7 DNA MER2_type 115 412 -2079 5 999 351 0 0 0 chr6 54361227 54361266 -95155771 + (TATG)n Simple_repeat Simple_repeat 2 40 0 5 999 1233 89 0 12 chr6 54362131 54362301 -95154736 + URR1A DNA MER1_type 59 226 0 5 999 606 247 98 6 chr6 54363203 54363386 -95153651 - MLT1A1 LTR MaLR 0 408 209 5 999 673 315 36 9 chr6 54363418 54363642 -95153395 + MLT1A LTR MaLR 133 362 -12 5 999 459 0 0 0 chr6 54363658 54363709 -95153328 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 5 999 796 192 144 17 chr6 54363709 54363889 -95153148 - B3 SINE B2 -12 204 2 5 999 315 0 0 0 chr6 54363892 54363927 -95153110 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 999 2659 139 24 7 chr6 54364534 54364948 -95152089 - MTC LTR MaLR 0 421 1 5 999 4561 179 20 17 chr6 54365293 54366332 -95150705 + RMER12B LTR ERVK 1 1004 -400 5 999 336 228 37 37 chr6 54366401 54366483 -95150554 + RMER30 DNA MER1_type 52 133 -69 5 999 301 288 186 29 chr6 54366572 54366847 -95150190 - L2 LINE L2 -539 2880 2563 5 999 342 0 0 0 chr6 54367395 54367433 -95149604 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 999 1365 25 0 0 chr6 54367433 54367592 -95149445 - B2_Mm1a SINE B2 -33 160 2 5 999 211 359 21 92 chr6 54369088 54369229 -95147808 + MIRb SINE MIR 92 222 -46 5 999 2435 233 30 32 chr6 54369842 54370527 -95146510 + ORR1D2-int LTR MaLR 11 694 -676 5 999 420 77 0 0 chr6 54371634 54371699 -95145338 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 999 279 0 0 0 chr6 54371713 54371744 -95145293 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 999 4845 45 10 10 chr6 54373020 54373607 -95143430 + LTRIS_Mus LTR ERV1 1 587 0 5 999 281 341 18 12 chr6 54373701 54373870 -95143167 + (TA)n Simple_repeat Simple_repeat 1 170 0 5 999 352 296 47 12 chr6 54373877 54374048 -95142989 + (TATG)n Simple_repeat Simple_repeat 1 177 0 5 999 233 293 35 28 chr6 54374097 54374241 -95142796 + L1ME4a LINE L1 5941 6085 -39 5 999 245 184 25 38 chr6 54376723 54376802 -95140235 + (TTTG)n Simple_repeat Simple_repeat 2 79 0 5 999 227 109 20 80 chr6 54376804 54376816 -95140221 - B1_Mus2 SINE Alu -1 146 138 5 999 1157 70 0 7 chr6 54376816 54376961 -95140076 - B1_Mus1 SINE Alu -1 147 4 5 999 227 109 20 80 chr6 54376961 54376998 -95140039 - B1_Mus2 SINE Alu -10 137 100 5 999 780 147 116 0 chr6 54377021 54377150 -95139887 - B1_Mur4 SINE Alu -1 149 6 5 999 564 56 0 0 chr6 54377928 54378000 -95139037 + (GAAA)n Simple_repeat Simple_repeat 3 74 0 5 999 297 51 0 0 chr6 54378233 54378272 -95138765 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5 999 230 259 0 0 chr6 54379750 54379808 -95137229 + (CGA)n Simple_repeat Simple_repeat 2 59 0 5 999 341 291 58 0 chr6 54380358 54380461 -95136576 - MIR SINE MIR -65 143 35 5 999 653 249 48 29 chr6 54381066 54381273 -95135764 - B3 SINE B2 -5 211 1 5 999 207 0 0 0 chr6 54381455 54381478 -95135559 + (T)n Simple_repeat Simple_repeat 1 23 0 5 999 194 259 202 53 chr6 54381656 54381770 -95135267 - MIR SINE MIR -37 231 101 5 999 396 0 0 0 chr6 54382140 54382184 -95134853 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 999 641 195 59 0 chr6 54382312 54382430 -95134607 + RSINE1 SINE B4 3 127 -38 5 999 513 104 0 0 chr6 54382441 54382518 -95134519 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 999 243 0 0 0 chr6 54383301 54383328 -95133709 + (A)n Simple_repeat Simple_repeat 1 27 0 5 999 231 329 23 34 chr6 54383764 54383852 -95133185 + MIRm SINE MIR 73 159 -117 5 999 209 143 0 0 chr6 54384181 54384216 -95132821 - L4 LINE RTE -210 1819 1785 5 999 445 305 113 27 chr6 54384818 54385074 -95131963 - B4A SINE B4 -14 278 1 5 999 26 0 0 0 chr6 54385140 54385166 -95131871 + AT_rich Low_complexity Low_complexity 1 26 0 5 999 180 135 0 0 chr6 54385236 54385273 -95131764 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 999 245 304 16 89 chr6 54385433 54385556 -95131481 - MLT1L LTR MaLR -145 465 352 5 999 398 281 178 47 chr6 54386767 54387036 -95130001 - L1MB8 LINE L1 -171 6007 5703 5 999 281 266 24 48 chr6 54387036 54387119 -95129918 + ID4 SINE ID 2 82 -1 5 999 286 305 62 28 chr6 54387348 54387513 -95129524 + MIRb SINE MIR 3 177 -91 5 999 293 123 15 0 chr6 54387821 54387886 -95129151 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 999 1852 279 84 88 chr6 54388567 54389106 -95127931 + RCHARR1 DNA MER1_type 35 587 -387 5 999 1109 234 179 28 chr6 54389106 54389470 -95127567 + MTD LTR MaLR 1 419 0 5 999 1852 279 84 88 chr6 54389470 54389869 -95127168 + RCHARR1 DNA MER1_type 588 969 -5 5 999 425 19 19 0 chr6 54389996 54390050 -95126987 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 999 234 0 0 0 chr6 54390484 54390510 -95126527 + (T)n Simple_repeat Simple_repeat 1 26 0 5 999 227 143 0 39 chr6 54391228 54391279 -95125758 + (TATG)n Simple_repeat Simple_repeat 1 49 0 5 999 718 269 62 90 chr6 54391326 54391344 -95125693 - B4A SINE B4 -1 291 274 5 999 213 121 0 0 chr6 54391344 54391377 -95125660 + (CG)n Simple_repeat Simple_repeat 2 34 0 5 999 718 269 62 90 chr6 54391377 54391648 -95125389 - B4A SINE B4 -19 273 10 5 999 203 232 129 35 chr6 54392120 54392205 -95124832 - L3 LINE CR1 -1656 2833 2741 5 999 23 33 0 0 chr6 54392371 54392401 -95124636 + AT_rich Low_complexity Low_complexity 1 30 0 5 999 229 304 0 25 chr6 54392577 54392658 -95124379 - L1M4 LINE L1 -2040 4106 4028 5 999 582 240 6 38 chr6 54392730 54392890 -95124147 - RSINE1 SINE B4 -6 159 5 5 999 4387 30 4 0 chr6 54392976 54393483 -95123554 - L1Md_A LINE L1 0 6582 6074 5 999 360 64 0 0 chr6 54393483 54393530 -95123507 + L1Md_A LINE L1 6029 6075 -507 5 999 781 174 72 0 chr6 54393530 54393668 -95123369 - B1_Mur2 SINE Alu -1 148 1 5 124 922 273 43 18 chr6 54394654 54394930 -95122107 - B4A SINE B4 -7 285 3 5 1000 348 308 30 19 chr6 54395031 54395147 -95121890 - B1F SINE Alu -21 126 9 6 1000 1180 41 21 0 chr6 54396108 54396253 -95120784 + B1_Mus1 SINE Alu 1 148 0 6 1000 381 93 0 0 chr6 54396317 54396371 -95120666 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1000 275 240 48 29 chr6 54396501 54396604 -95120433 - L1M7 LINE L1 -4631 1587 1483 6 1000 274 173 360 0 chr6 54396694 54396769 -95120268 + B3A SINE B2 7 108 -108 6 1000 350 333 19 7 chr6 54398377 54398531 -95118506 + MER113 DNA MER1_type 304 459 -62 6 1000 253 289 114 84 chr6 54399877 54399919 -95117118 + Charlie8 DNA MER1_type 39 76 -2352 6 1000 749 275 70 70 chr6 54399919 54400003 -95117034 + MER2 DNA MER2_type 1 100 -245 6 1000 248 0 31 0 chr6 54400003 54400035 -95117002 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1000 749 275 70 70 chr6 54400035 54400294 -95116743 + MER2 DNA MER2_type 101 344 -1 6 1000 253 289 114 84 chr6 54400294 54400417 -95116620 + Charlie8 DNA MER1_type 77 208 -2220 6 1000 351 0 0 0 chr6 54402099 54402138 -95114899 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1000 267 31 0 0 chr6 54402534 54402566 -95114471 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1000 261 135 0 0 chr6 54402885 54402937 -95114100 + (CCA)n Simple_repeat Simple_repeat 3 54 0 6 1000 475 288 74 61 chr6 54403620 54403783 -95113254 - MER20 DNA MER1_type -9 210 46 6 1000 22 0 0 0 chr6 54404540 54404562 -95112475 + AT_rich Low_complexity Low_complexity 1 22 0 6 1000 1816 235 112 52 chr6 54405046 54405662 -95111375 + Lx7 LINE L1 6998 7650 -46 6 1000 297 236 120 19 chr6 54405690 54405798 -95111239 + Lx7 LINE L1 7578 7696 0 6 1000 366 156 0 0 chr6 54405933 54405997 -95111040 + GA-rich Low_complexity Low_complexity 3 66 0 6 1000 402 239 60 26 chr6 54406169 54406285 -95110752 + RSINE1 SINE B4 2 121 -44 6 1000 1347 76 0 0 chr6 54406287 54406736 -95110301 + (CA)n Simple_repeat Simple_repeat 1 449 0 6 1000 287 338 60 0 chr6 54407127 54407260 -95109777 + Cheshire DNA MER1_type 104 244 -2176 6 1000 443 266 117 40 chr6 54407268 54407491 -95109546 + Cheshire DNA MER1_type 2168 2407 -13 6 1000 223 222 12 12 chr6 54407913 54407995 -95109042 + GA-rich Low_complexity Low_complexity 2 83 0 6 1000 234 0 0 0 chr6 54407995 54408021 -95109016 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 6 1000 450 245 60 33 chr6 54408089 54408273 -95108764 - MER31B LTR ERV1 -18 448 252 6 1000 256 293 53 13 chr6 54408306 54408382 -95108655 - ID SINE ID -142 82 4 6 1000 757 128 128 0 chr6 54408496 54408629 -95108408 - B1_Mur4 SINE Alu 0 150 1 6 1000 404 286 24 40 chr6 54408636 54408760 -95108277 - MER31B LTR ERV1 -358 127 6 6 1000 194 0 39 0 chr6 54408788 54408814 -95108223 + (CCCCCA)n Simple_repeat Simple_repeat 1 27 0 6 1000 243 0 0 0 chr6 54410240 54410267 -95106770 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1000 1167 191 10 0 chr6 54411716 54411920 -95105117 - B3 SINE B2 -10 206 1 6 1000 206 259 86 0 chr6 54411945 54412026 -95105011 - MIR SINE MIR -142 120 33 6 1000 251 389 25 57 chr6 54413569 54413727 -95103310 + MIRb SINE MIR 25 177 -91 6 1000 291 312 15 39 chr6 54413732 54413862 -95103175 + L2a LINE L2 3300 3426 0 6 1000 261 0 0 0 chr6 54414524 54414553 -95102484 + (CAA)n Simple_repeat Simple_repeat 3 31 0 6 1000 485 16 16 0 chr6 54414751 54414813 -95102224 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 6 1000 308 244 0 12 chr6 54415804 54415887 -95101150 + PB1D9 SINE Alu 37 118 -2 6 1000 495 0 0 0 chr6 54416051 54416106 -95100931 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 6 1000 536 163 233 0 chr6 54416365 54416494 -95100543 + B3 SINE B2 58 216 0 6 1000 267 77 92 0 chr6 54416668 54416733 -95100304 + T-rich Low_complexity Low_complexity 3 73 0 6 1000 565 233 8 40 chr6 54416746 54416871 -95100166 - B1_Mur1 SINE Alu 0 149 29 6 1000 317 321 46 73 chr6 54416747 54416898 -95100139 - ID_B1 SINE B4 0 224 78 6 1000 334 219 92 20 chr6 54416902 54417000 -95100037 - L1MC2 LINE L1 -13 6331 6227 6 1000 23 33 0 0 chr6 54417794 54417824 -95099213 + AT_rich Low_complexity Low_complexity 1 30 0 6 1000 1228 61 0 0 chr6 54418053 54418200 -95098837 - B1_Mus2 SINE Alu 0 147 1 6 1000 438 101 0 0 chr6 54418449 54418518 -95098519 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 1000 219 307 30 30 chr6 54418819 54418987 -95098050 + (CAGGG)n Simple_repeat Simple_repeat 2 169 0 6 1000 313 327 37 9 chr6 54420055 54420163 -95096874 - L1ME1 LINE L1 -129 6050 5940 6 1000 311 279 26 25 chr6 54420204 54420326 -95096711 - L1MC LINE L1 -1451 4695 4573 6 1000 274 281 42 63 chr6 54420386 54420481 -95096556 - RMER10A LTR ERVL -301 141 49 6 1000 369 241 115 68 chr6 54420720 54421017 -95096020 - L1MC LINE L1 -1979 4161 3836 6 1000 1752 186 64 45 chr6 54421073 54421496 -95095541 - RMER10A LTR ERVL -5 437 7 6 1000 594 51 0 0 chr6 54421506 54421584 -95095453 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 1000 342 351 11 34 chr6 54422128 54422305 -95094732 - MIR SINE MIR -2 260 88 6 1000 234 0 0 0 chr6 54423257 54423283 -95093754 + (CCCCCA)n Simple_repeat Simple_repeat 6 31 0 6 1000 252 0 0 0 chr6 54423825 54423853 -95093184 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1000 1289 280 68 50 chr6 54423915 54424374 -95092663 + RMER5 LTR ERV1 68 534 0 6 1000 204 67 0 0 chr6 54424629 54424659 -95092378 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 6 1000 182 128 0 41 chr6 54424687 54424736 -95092301 + (CAA)n Simple_repeat Simple_repeat 2 48 0 6 1000 1979 178 18 23 chr6 54424736 54425122 -95091915 - ORR1C2 LTR MaLR 0 384 1 6 1000 186 206 0 0 chr6 54425673 54425707 -95091330 - L2 LINE L2 -540 2879 2846 6 1000 398 238 70 44 chr6 54426766 54426924 -95090113 + L1MA4 LINE L1 5807 5968 -332 6 1000 921 304 100 28 chr6 54427338 54427459 -95089578 - Lx8 LINE L1 -18 7455 7332 6 1000 548 29 14 0 chr6 54427459 54427529 -95089508 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 6 1000 921 304 100 28 chr6 54427529 54427678 -95089359 - Lx8 LINE L1 -142 7331 7178 6 1000 345 24 0 0 chr6 54427678 54427720 -95089317 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1000 921 304 100 28 chr6 54427720 54427909 -95089128 - Lx8 LINE L1 -296 7177 6962 6 1000 568 231 86 13 chr6 54427992 54428145 -95088892 + B3 SINE B2 29 198 0 6 1000 1021 234 0 9 chr6 54429405 54429616 -95087421 + B3 SINE B2 3 211 -5 6 1000 710 151 246 6 chr6 54430302 54430469 -95086568 - RLTR40 LTR ERVK -17 800 594 6 1000 324 0 0 0 chr6 54430470 54430506 -95086531 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1000 970 167 91 95 chr6 54430508 54430601 -95086436 - RLTR40 LTR ERVK -533 284 212 6 1000 1246 113 11 16 chr6 54430601 54430789 -95086248 + B2_Mm2 SINE B2 2 188 -7 6 1000 970 167 91 95 chr6 54430789 54430959 -95086078 - RLTR40 LTR ERVK -606 211 22 6 1000 300 198 120 11 chr6 54432152 54432244 -95084793 - L1MB3 LINE L1 -1 6182 6081 6 1000 771 230 12 116 chr6 54432468 54432709 -95084328 - B3A SINE B2 0 216 1 6 1000 1422 65 16 11 chr6 54432721 54432908 -95084129 - B2_Mm2 SINE B2 -7 188 1 6 1000 1670 197 102 6 chr6 54433126 54433458 -95083579 - ORR1D2 LTR MaLR 0 370 7 6 1000 1175 56 14 0 chr6 54434030 54434174 -95082863 + B1_Mus1 SINE Alu 3 148 0 6 1000 263 317 125 0 chr6 54434433 54434537 -95082500 - MLT1H LTR MaLR -1 548 432 6 1000 238 280 137 85 chr6 54434653 54434864 -95082173 - MLT1H LTR MaLR -271 308 87 6 1000 201 121 0 0 chr6 54435370 54435403 -95081634 + (CCCCCA)n Simple_repeat Simple_repeat 1 33 0 6 1000 210 226 57 0 chr6 54435491 54435544 -95081493 + C-rich Low_complexity Low_complexity 1 56 0 6 1000 186 143 0 0 chr6 54435694 54435729 -95081308 + (CCA)n Simple_repeat Simple_repeat 2 36 0 6 1000 264 271 131 0 chr6 54436089 54436196 -95080841 + MIR SINE MIR 25 145 -117 6 1000 412 264 33 44 chr6 54436652 54436834 -95080203 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1000 439 297 8 0 chr6 54437640 54437758 -95079279 - MIR SINE MIR -66 196 78 6 1000 234 288 193 26 chr6 54439821 54439935 -95077102 - ORR1E LTR MaLR -221 138 6 6 1000 650 307 85 0 chr6 54440049 54440342 -95076695 + L1MB5 LINE L1 5753 6070 -104 6 1000 2752 144 52 46 chr6 54440456 54440979 -95076058 + RLTR11A LTR ERVK 1 526 -2 6 1000 1018 306 42 98 chr6 54441878 54442553 -95074484 - L1MB2 LINE L1 -80 6091 5453 6 1000 192 308 159 25 chr6 54443134 54443297 -95073740 + L2a LINE L2 2932 3116 -310 6 1000 381 243 69 43 chr6 54443309 54443425 -95073612 - MLT1A LTR MaLR -47 327 209 6 1000 239 283 0 16 chr6 54443455 54443516 -95073521 - MLT1A LTR MaLR -322 86 27 6 1000 183 385 73 9 chr6 54443657 54443767 -95073270 + L2a LINE L2 3258 3374 -1 6 1000 719 192 214 27 chr6 54446595 54446782 -95070255 + URR1A DNA MER1_type 5 226 0 6 1000 822 308 174 30 chr6 54447605 54448070 -95068967 + L1M4c LINE L1 15 546 -5838 6 1000 588 246 158 2 chr6 54448076 54448312 -95068725 - MTE2b LTR MaLR -3 376 82 6 1000 220 83 0 40 chr6 54448312 54448362 -95068675 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 6 1000 1209 283 118 88 chr6 54448528 54449550 -95067487 + L1M4c LINE L1 606 1658 -4726 6 1000 1203 162 14 58 chr6 54449774 54449997 -95067040 - B3 SINE B2 -2 214 2 6 1000 225 175 0 0 chr6 54451904 54451944 -95065093 + GA-rich Low_complexity Low_complexity 2 41 0 6 1000 736 246 53 39 chr6 54451982 54452189 -95064848 + B4 SINE B4 83 292 0 6 1000 806 248 59 80 chr6 54453074 54453363 -95063674 + B4A SINE B4 6 288 -4 6 1000 217 51 25 25 chr6 54453379 54453419 -95063618 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1000 650 252 13 33 chr6 54454000 54454152 -95062885 - B3A SINE B2 -3 195 47 6 1000 369 0 0 0 chr6 54454491 54454532 -95062505 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1000 234 291 22 122 chr6 54454660 54454750 -95062287 - ID4 SINE ID 0 83 3 6 1000 459 243 86 29 chr6 54455121 54455295 -95061742 - L1MB3 LINE L1 -229 5954 5771 6 1000 300 53 0 0 chr6 54455295 54455333 -95061704 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 6 1000 312 226 150 21 chr6 54455351 54455516 -95061521 - L1MB3 LINE L1 -478 5705 5520 6 1000 579 179 18 18 chr6 54455598 54455712 -95061325 - PB1D9 SINE Alu -6 114 1 6 1000 287 284 0 113 chr6 54455712 54455742 -95061295 - MT2B LTR ERVL -446 155 139 6 1000 468 0 0 0 chr6 54457759 54457811 -95059226 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1000 209 205 113 144 chr6 54459735 54459832 -95057205 - L3 LINE CR1 -956 3533 3440 7 1000 1079 287 143 26 chr6 54460000 54460489 -95056548 + MTC-int LTR MaLR 474 1095 -163 7 1000 520 209 203 28 chr6 54460508 54460651 -95056386 + MTD LTR MaLR 182 349 -70 7 1000 556 305 125 48 chr6 54460759 54461007 -95056030 - B4A SINE B4 -23 269 3 7 1000 636 259 67 42 chr6 54461067 54461260 -95055777 + B3A SINE B2 1 198 0 7 1000 207 0 0 0 chr6 54461540 54461563 -95055474 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1000 533 189 11 0 chr6 54463658 54463748 -95053289 + B3 SINE B2 2 92 -124 7 1000 242 206 15 0 chr6 54463797 54463865 -95053172 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 7 1000 21 0 0 0 chr6 54465109 54465130 -95051907 + AT_rich Low_complexity Low_complexity 1 21 0 7 1000 2737 46 0 0 chr6 54465231 54465559 -95051478 + L1Md_A LINE L1 6254 6581 -1 7 1000 296 302 120 30 chr6 54465831 54465964 -95051073 - MIR3 SINE MIR -56 152 8 7 1000 284 286 22 11 chr6 54466010 54466102 -95050935 - MIRb SINE MIR -100 168 76 7 1000 387 246 0 0 chr6 54467883 54468062 -95048975 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 7 1000 315 265 147 29 chr6 54469141 54469277 -95047760 + HAL1-3A_ME LINE L1 2288 2439 -419 7 1000 1198 68 0 0 chr6 54470323 54470470 -95046567 - B1_Mus2 SINE Alu 0 147 1 7 1000 615 27 0 0 chr6 54470861 54470934 -95046103 + (GA)n Simple_repeat Simple_repeat 1 73 0 7 1000 546 311 59 36 chr6 54470981 54471201 -95045836 + MLT1J LTR MaLR 38 262 -250 7 1000 278 286 0 0 chr6 54471633 54471697 -95045340 + B1F SINE Alu 1 64 -56 7 1000 349 298 120 106 chr6 54471776 54472125 -95044912 + ORR1E LTR MaLR 6 359 0 7 1000 304 221 30 148 chr6 54473681 54473782 -95043255 + L1MEg LINE L1 1864 1952 -4132 7 1000 270 0 0 0 chr6 54473896 54473926 -95043111 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1000 1011 278 51 20 chr6 54476120 54476472 -95040565 + MLT1A0 LTR MaLR 1 363 -2 7 1000 191 301 155 58 chr6 54476722 54476877 -95040160 + MIRb SINE MIR 78 247 -21 7 1000 384 295 271 23 chr6 54478692 54478991 -95038046 + MLT1A LTR MaLR 1 372 -2 7 1000 306 306 132 69 chr6 54479436 54479580 -95037457 + LTR84a LTR ERVL 601 753 -4 7 1000 387 297 18 0 chr6 54479591 54479702 -95037335 + MIRb SINE MIR 99 211 -57 7 1000 431 336 118 27 chr6 54479995 54480215 -95036822 + B4A SINE B4 49 288 -4 7 1000 390 21 0 0 chr6 54480700 54480747 -95036290 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1000 568 38 12 12 chr6 54480801 54480881 -95036156 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 7 1000 234 0 0 0 chr6 54481387 54481413 -95035624 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1000 1118 162 83 5 chr6 54482247 54482452 -95034585 + URR1A DNA MER1_type 1 221 -5 7 1000 342 230 43 65 chr6 54483043 54483125 -95033912 + PB1D7 SINE Alu 28 108 -12 7 1000 810 91 0 0 chr6 54483125 54483246 -95033791 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 7 1000 388 266 181 32 chr6 54483952 54484280 -95032757 - L1MB7 LINE L1 -6 6173 5793 7 1000 229 299 51 25 chr6 54484924 54485003 -95032034 - Charlie15a DNA MER1_type -30 194 114 7 1000 753 210 101 34 chr6 54485316 54485523 -95031514 + ID_B1 SINE B4 2 222 -2 7 1000 1131 68 0 40 chr6 54486268 54486283 -95030754 - B1_Mus1 SINE Alu -1 147 138 7 1000 244 0 56 0 chr6 54486283 54486319 -95030718 + (TTG)n Simple_repeat Simple_repeat 2 39 0 7 1000 1131 68 0 40 chr6 54486319 54486455 -95030582 - B1_Mus1 SINE Alu -11 137 2 7 1000 948 213 18 50 chr6 54487300 54487522 -95029515 + B3 SINE B2 2 216 0 7 1000 382 219 0 27 chr6 54487732 54487807 -95029230 - MTE2b LTR MaLR -302 77 5 7 1000 992 232 19 0 chr6 54488338 54488549 -95028488 - B3 SINE B2 0 216 2 7 1000 276 30 0 0 chr6 54488572 54488605 -95028432 + (GA)n Simple_repeat Simple_repeat 1 33 0 7 1000 877 253 82 16 chr6 54489513 54489770 -95027267 + B4A SINE B4 1 274 -18 7 1000 290 133 0 48 chr6 54489803 54489866 -95027171 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1000 267 31 0 0 chr6 54490966 54490998 -95026039 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1000 2953 167 27 15 chr6 54490999 54491523 -95025514 + RMER5 LTR ERV1 1 530 -4 7 1000 270 0 0 0 chr6 54491715 54491745 -95025292 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1000 2371 164 80 52 chr6 54492274 54492788 -95024249 + RLTR11A LTR ERVK 1 528 0 7 1000 1178 200 9 0 chr6 54493258 54493468 -95023569 - B3 SINE B2 -4 212 1 7 1000 268 191 19 0 chr6 54493905 54493971 -95023066 - ORR1D1 LTR MaLR -295 75 9 7 1000 456 213 0 21 chr6 54493975 54494071 -95022966 + RSINE1 SINE B4 3 96 -69 7 1000 21 0 0 0 chr6 54495151 54495172 -95021865 + AT_rich Low_complexity Low_complexity 1 21 0 7 1000 756 272 6 0 chr6 54495177 54495339 -95021698 - B3 SINE B2 -19 197 35 7 1000 377 320 180 91 chr6 54495376 54495916 -95021121 - MLT1G3 LTR MaLR 0 595 8 7 1000 249 301 110 58 chr6 54497026 54497181 -95019856 + L1MC LINE L1 5505 5667 -2215 7 1000 228 67 0 0 chr6 54497276 54497306 -95019731 + (GGA)n Simple_repeat Simple_repeat 3 32 0 7 1000 832 222 18 80 chr6 54497456 54497681 -95019356 + ORR1D1 LTR MaLR 1 211 -163 7 1000 248 70 0 23 chr6 54497701 54497745 -95019292 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 1000 1254 54 0 0 chr6 54497754 54497902 -95019135 - B1_Mus1 SINE Alu 0 148 1 7 1000 384 22 0 0 chr6 54498680 54498725 -95018312 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1000 956 247 81 12 chr6 54498783 54499041 -95017996 - MER2 DNA MER2_type -69 276 1 7 1000 186 133 0 0 chr6 54499930 54499960 -95017077 + (TA)n Simple_repeat Simple_repeat 1 30 0 7 1000 1326 162 14 5 chr6 54500435 54500658 -95016379 + URR1B DNA MER1_type 1 225 0 1 1000 249 250 79 0 chr6 54500662 54500738 -95016299 + MIRb SINE MIR 47 128 -140 2 1000 504 0 0 0 chr6 54501269 54501325 -95015712 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1000 458 240 49 16 chr6 54501767 54501890 -95015147 + B1_Mur1 SINE Alu 22 148 -1 4 1000 207 100 0 0 chr6 54501891 54501921 -95015116 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1000 1179 226 100 34 chr6 54502210 54502559 -95014478 + Lx9 LINE L1 7272 7643 -1 6 1000 408 250 68 8 chr6 54503252 54503385 -95013652 + MER3 DNA MER1_type 6 146 -63 7 1000 599 244 237 14 chr6 54503683 54503979 -95013058 - MTEa LTR MaLR 0 379 1 8 1000 503 280 146 29 chr6 54504001 54504240 -95012797 + L1MB2 LINE L1 5904 6170 -1 9 1000 238 226 75 75 chr6 54505469 54505603 -95011434 - ORR1E LTR MaLR -222 137 4 1 1000 276 325 135 6 chr6 54505825 54505995 -95011042 + MER102b DNA MER1_type 38 229 -112 1 1000 184 246 32 16 chr6 54506250 54506312 -95010725 + MIRb SINE MIR 192 254 -14 1 1000 372 215 72 22 chr6 54506464 54506602 -95010435 + L1MC5 LINE L1 7515 7659 -302 1 1000 290 346 57 38 chr6 54506643 54506748 -95010289 + PB1 SINE Alu 6 112 -15 1 1000 248 189 39 51 chr6 54506967 54507045 -95009992 + B4A SINE B4 70 146 -146 1 1000 326 194 112 51 chr6 54506998 54507096 -95009941 + PB1D10 SINE Alu 14 117 0 1 1000 216 67 0 0 chr6 54507297 54507327 -95009710 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1000 763 233 11 49 chr6 54507822 54508007 -95009030 + B3 SINE B2 27 204 -12 1 1000 216 97 0 0 chr6 54508101 54508132 -95008905 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1 1000 23 33 0 0 chr6 54508909 54508939 -95008098 + AT_rich Low_complexity Low_complexity 1 30 0 2 1000 423 0 0 0 chr6 54509188 54509235 -95007802 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 2 1000 1201 232 77 72 chr6 54510806 54511182 -95005855 - MTE2a LTR MaLR -1 378 1 2 1000 23 0 0 0 chr6 54512144 54512167 -95004870 + GC_rich Low_complexity Low_complexity 1 23 0 2 1000 495 318 9 152 chr6 54512374 54512708 -95004329 + MTE2a LTR MaLR 3 276 -103 2 1000 212 0 36 0 chr6 54512819 54512847 -95004190 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1000 253 68 45 0 chr6 54512847 54512891 -95004146 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1000 330 132 0 0 chr6 54512972 54513025 -95004012 + (TCC)n Simple_repeat Simple_repeat 3 55 0 2 1000 740 261 49 33 chr6 54513100 54513405 -95003632 - MER33 DNA MER1_type 0 324 15 2 1000 186 43 0 0 chr6 54513490 54513513 -95003524 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 2 1000 524 266 8 8 chr6 54513642 54513767 -95003270 - B1_Mur2 SINE Alu -1 148 24 3 1000 369 0 0 0 chr6 54515338 54515379 -95001658 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1000 459 35 0 0 chr6 54517074 54517131 -94999906 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1000 219 150 25 0 chr6 54517316 54517356 -94999681 + PB1D9 SINE Alu 73 113 -7 3 1000 435 38 0 0 chr6 54517513 54517566 -94999471 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1000 243 0 0 0 chr6 54518436 54518463 -94998574 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 3 1000 489 261 127 6 chr6 54518701 54518969 -94998068 + L1M4 LINE L1 4481 4786 -1360 3 1000 24 0 0 0 chr6 54519025 54519049 -94997988 + AT_rich Low_complexity Low_complexity 1 24 0 3 1000 871 248 73 13 chr6 54520335 54520568 -94996469 - ORR1D2 LTR MaLR 0 370 124 3 1000 528 266 22 0 chr6 54521006 54521145 -94995892 - ORR1D2 LTR MaLR -217 142 1 3 1000 916 233 5 23 chr6 54521473 54521693 -94995344 - B3 SINE B2 0 216 1 3 1000 2210 34 4 4 chr6 54521898 54522163 -94994874 - L1Md_F2 LINE L1 -12 6570 6306 4 1000 581 49 0 12 chr6 54522584 54522666 -94994371 - B1_Mm SINE Alu 0 147 67 4 1000 303 28 0 0 chr6 54523047 54523083 -94993954 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1000 931 70 47 0 chr6 54523095 54523266 -94993771 + (GA)n Simple_repeat Simple_repeat 1 179 0 4 1000 246 204 0 0 chr6 54524044 54524132 -94992905 + (TCTCTG)n Simple_repeat Simple_repeat 1 88 0 4 1000 543 282 112 15 chr6 54524270 54524475 -94992562 - B4A SINE B4 -60 232 8 4 1000 1047 200 4 61 chr6 54525595 54525824 -94991213 + B3 SINE B2 1 216 0 4 15 229 200 20 0 chr6 54525932 54525982 -94991055 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1001 225 227 0 83 chr6 54526020 54526068 -94990969 - RMER1A Other Other -684 346 303 4 1001 1907 176 53 6 chr6 54526035 54526373 -94990664 - RMER1B Other Other -669 397 44 4 1001 357 300 41 70 chr6 54527253 54527425 -94989612 + B4 SINE B4 2 168 -124 5 1001 580 288 25 46 chr6 54529910 54530147 -94986890 - B4A SINE B4 -59 233 2 5 1001 801 271 65 22 chr6 54530310 54530585 -94986452 - B4 SINE B4 -5 287 1 5 1001 28 0 0 0 chr6 54531161 54531189 -94985848 + AT_rich Low_complexity Low_complexity 1 28 0 5 1001 1071 163 67 34 chr6 54531225 54531434 -94985603 - B3 SINE B2 0 216 1 5 1001 408 186 202 20 chr6 54531604 54531703 -94985334 + PB1D9 SINE Alu 2 118 -2 5 1001 1302 97 0 31 chr6 54531705 54531896 -94985141 + B2_Mm2 SINE B2 1 185 -10 5 1001 1246 117 11 0 chr6 54531904 54532092 -94984945 + B2_Mm2 SINE B2 5 194 -1 5 1001 206 32 0 31 chr6 54532239 54532271 -94984766 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1001 1092 73 0 0 chr6 54532271 54532408 -94984629 - B1_Mus1 SINE Alu -11 137 1 5 1001 288 261 53 18 chr6 54532858 54532971 -94984066 + B3A SINE B2 2 118 -80 6 1001 282 312 108 8 chr6 54532971 54532987 -94984050 + B4A SINE B4 2 143 -149 6 1001 230 250 150 44 chr6 54533000 54533113 -94983924 + B4A SINE B4 163 287 -5 6 1001 269 290 0 0 chr6 54533622 54533691 -94983346 - ID4 SINE ID -10 73 5 6 1001 1713 26 0 0 chr6 54533900 54534093 -94982944 + B2_Mm1a SINE B2 1 193 0 6 1001 264 261 0 0 chr6 54534100 54534165 -94982872 + PB1D10 SINE Alu 42 106 -11 6 1001 1131 76 0 0 chr6 54534292 54534436 -94982601 + B1_Mus2 SINE Alu 1 144 -3 6 1001 414 0 0 0 chr6 54534436 54534482 -94982555 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 6 1001 258 186 154 19 chr6 54535027 54535131 -94981906 - Lx8 LINE L1 -3 7470 7353 6 1001 945 175 11 21 chr6 54535158 54535345 -94981692 + Lx2B LINE L1 6812 6996 -4 6 1001 465 252 24 0 chr6 54535590 54535713 -94981324 - Lx7 LINE L1 -366 7330 7205 6 1001 812 175 0 7 chr6 54538046 54538190 -94978847 + B1_Mus1 SINE Alu 6 148 0 7 1001 280 212 12 0 chr6 54539456 54539517 -94977520 - ID4_ SINE ID -64 88 25 7 1001 324 0 0 0 chr6 54539528 54539564 -94977473 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1001 3625 18 0 0 chr6 54539860 54540256 -94976781 + MTA_Mm LTR MaLR 1 396 0 7 1001 326 205 260 0 chr6 54540325 54540452 -94976585 - MER2 DNA MER2_type -91 254 95 7 1001 883 142 35 0 chr6 54541134 54541275 -94975762 - B1_Mus1 SINE Alu 0 148 3 7 1001 1643 219 54 13 chr6 54543737 54544126 -94972911 - MTD LTR MaLR -8 411 7 7 1001 333 0 0 0 chr6 54544321 54544358 -94972679 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 1001 186 0 0 81 chr6 54544466 54544503 -94972534 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1001 345 270 35 65 chr6 54544720 54544890 -94972147 - MER5A1 DNA MER1_type 0 166 2 7 1001 29 60 0 0 chr6 54545371 54545421 -94971616 + GC_rich Low_complexity Low_complexity 1 50 0 8 1001 216 162 0 0 chr6 54547249 54547286 -94969751 + CT-rich Low_complexity Low_complexity 3 39 0 8 1001 2107 319 49 18 chr6 54547322 54548155 -94968882 - Lx8 LINE L1 -214 7259 6401 8 1001 737 204 0 14 chr6 54548344 54548488 -94968549 + B1_Mur2 SINE Alu 7 148 -1 8 1001 216 0 0 0 chr6 54549088 54549112 -94967925 + (TGG)n Simple_repeat Simple_repeat 3 26 0 8 1001 235 299 74 33 chr6 54549919 54550040 -94966997 - MIRb SINE MIR -74 194 69 8 1001 326 269 131 44 chr6 54550634 54550840 -94966197 - L1M4 LINE L1 -991 5155 4932 8 1001 22 0 0 0 chr6 54552357 54552379 -94964658 + AT_rich Low_complexity Low_complexity 1 22 0 8 1001 1350 72 28 0 chr6 54552396 54552576 -94964461 + B2_Mm2 SINE B2 1 185 -10 8 1001 1615 192 83 25 chr6 54553915 54554278 -94962759 - ORR1C2 LTR MaLR 0 384 1 8 1001 21 36 0 0 chr6 54554370 54554398 -94962639 + AT_rich Low_complexity Low_complexity 1 28 0 9 1001 306 308 88 40 chr6 54554870 54554995 -94962042 + RCHARR1 DNA MER1_type 3 133 -841 9 1001 232 203 108 47 chr6 54555162 54555291 -94961746 + L1M4 LINE L1 2818 2954 -3192 9 1001 1207 161 187 16 chr6 54555307 54555628 -94961409 + ORR1C2 LTR MaLR 1 376 -8 9 1001 720 114 138 0 chr6 54556082 54556205 -94960832 - B1_Mus2 SINE Alu 0 147 8 9 1001 1606 73 0 21 chr6 54556369 54556606 -94960431 + MTB LTR MaLR 1 232 -168 9 1001 315 0 0 0 chr6 54556720 54556755 -94960282 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1001 11921 138 36 108 chr6 54557207 54558389 -94958648 - Lx3B LINE L1 -3 6970 5800 9 1001 439 94 0 0 chr6 54558389 54558453 -94958584 - B2_Mm2 SINE B2 -88 107 44 9 1001 11921 138 36 108 chr6 54558453 54559605 -94957432 - Lx3B LINE L1 -1174 5799 4658 9 1001 2108 94 36 0 chr6 54559605 54559913 -94957124 - ORR1A2 LTR MaLR -8 319 1 9 1001 11921 138 36 108 chr6 54559913 54559936 -94957101 - Lx3B LINE L1 -3 4657 4632 9 1001 207 0 0 0 chr6 54559936 54559959 -94957078 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1001 11921 120 21 169 chr6 54559959 54561016 -94956021 - Lx3B LINE L1 -1255 4631 3533 9 1001 335 276 16 8 chr6 54561036 54561053 -94955984 - L1M5 LINE L1 -3880 2266 2250 1 1001 1205 28 14 0 chr6 54561053 54561198 -94955839 - B1_Mus2 SINE Alu 0 147 1 1 1001 5730 142 12 11 chr6 54561198 54562392 -94954645 - L1_Mur1 LINE L1 -1696 2216 1017 1 1001 277 264 9 52 chr6 54563874 54563990 -94953047 - MLT1A0 LTR MaLR 0 365 255 1 1001 333 0 0 0 chr6 54564401 54564438 -94952599 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1001 417 20 0 0 chr6 54564438 54564487 -94952550 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1001 463 207 202 24 chr6 54564568 54564692 -94952345 - B1_Mus2 SINE Alu 0 147 2 1 1001 445 267 13 39 chr6 54564805 54564961 -94952076 + B4A SINE B4 1 152 -140 1 1001 352 323 34 68 chr6 54565513 54565689 -94951348 + MIRb SINE MIR 14 183 -85 1 1001 540 100 0 0 chr6 54567237 54567317 -94949720 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 1 1001 338 283 33 58 chr6 54567317 54567437 -94949600 - PB1D10 SINE Alu 0 117 1 1 1001 1500 54 16 0 chr6 54567599 54567784 -94949253 + B2_Mm2 SINE B2 2 189 -6 1 1001 227 330 110 0 chr6 54567999 54568090 -94948947 + MER20 DNA MER1_type 65 165 -54 1 1001 2105 151 15 53 chr6 54568132 54568525 -94948512 - ORR1C1 LTR MaLR 0 378 1 1 1001 258 267 3 0 chr6 54570807 54570878 -94946159 + ID4 SINE ID 11 82 -1 1 1001 350 301 48 0 chr6 54571633 54571736 -94945301 - PB1D7 SINE Alu -1 119 12 1 1001 872 142 223 5 chr6 54571878 54572062 -94944975 + URR1A DNA MER1_type 1 224 -2 1 1001 405 333 130 5 chr6 54573425 54573633 -94943404 + MER82 DNA MER2_type 418 651 -2 1 1001 644 242 0 0 chr6 54573702 54573822 -94943215 + RSINE1 SINE B4 3 122 -43 1 1001 275 326 0 144 chr6 54575093 54575108 -94941929 - B3A SINE B2 -19 179 66 1 1001 332 257 0 0 chr6 54575108 54575182 -94941855 - B4A SINE B4 0 292 219 1 1001 292 321 9 35 chr6 54575188 54575301 -94941736 - B4A SINE B4 -181 111 2 1 1001 447 259 194 5 chr6 54575368 54575585 -94941452 - L1ME2z LINE L1 -354 6090 5833 1 1001 253 259 144 20 chr6 54575778 54575924 -94941113 - L1ME2z LINE L1 -715 5449 5286 1 1001 248 315 65 79 chr6 54575946 54576050 -94940987 - L1ME2z LINE L1 -852 5294 5189 1 1001 1615 42 5 0 chr6 54576050 54576240 -94940797 - B2_Mm1a SINE B2 -2 191 1 1 1001 248 315 65 79 chr6 54576240 54576423 -94940614 - L1ME2z LINE L1 -958 5188 5004 1 1001 887 263 13 84 chr6 54576423 54576734 -94940303 - B4 SINE B4 -1 291 3 1 1001 248 315 65 79 chr6 54576734 54576876 -94940161 - L1ME2z LINE L1 -1143 5003 4870 1 1001 554 254 61 36 chr6 54576962 54577158 -94939879 - L1ME2z LINE L1 -1435 4711 4511 1 1001 2710 37 65 0 chr6 54577340 54577665 -94939372 - ORR1A1 LTR MaLR 0 346 1 1 1001 258 233 0 40 chr6 54577968 54578028 -94939009 + T-rich Low_complexity Low_complexity 16 73 0 1 1001 1482 59 11 0 chr6 54578028 54578214 -94938823 - B2_Mm1t SINE B2 -4 189 2 1 1001 258 233 0 40 chr6 54578214 54578229 -94938808 + T-rich Low_complexity Low_complexity 1 15 0 1 1001 30 45 0 0 chr6 54578246 54578290 -94938747 + AT_rich Low_complexity Low_complexity 1 44 0 1 1001 371 305 133 8 chr6 54578292 54578533 -94938504 - Charlie5 DNA MER1_type -13 2611 2341 1 1001 532 237 30 22 chr6 54579227 54579361 -94937676 + B1_Mus2 SINE Alu 1 135 -12 1 1001 204 40 0 0 chr6 54579361 54579386 -94937651 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1001 180 0 0 0 chr6 54579789 54579809 -94937228 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1 1001 187 31 30 30 chr6 54579968 54580001 -94937036 + (CAGCT)n Simple_repeat Simple_repeat 3 35 0 1 1001 352 273 81 0 chr6 54580230 54580329 -94936708 - MER5A DNA MER1_type -76 113 7 1 1001 22 35 0 0 chr6 54580663 54580692 -94936345 + AT_rich Low_complexity Low_complexity 1 29 0 1 1001 237 267 171 38 chr6 54581288 54581393 -94935644 - PB1D7 SINE Alu 0 120 2 1 1001 760 143 45 0 chr6 54581570 54581703 -94935334 + RMER6A LTR ERVK 618 756 0 1 1001 218 253 94 52 chr6 54582641 54582737 -94934300 + MIR3 SINE MIR 81 180 -28 1 1001 664 214 63 21 chr6 54582821 54582964 -94934073 - B1_Mur3 SINE Alu 0 149 1 1 1001 21 0 0 0 chr6 54584054 54584075 -94932962 + AT_rich Low_complexity Low_complexity 1 21 0 1 1001 22 0 0 0 chr6 54584939 54584961 -94932076 + AT_rich Low_complexity Low_complexity 1 22 0 1 1001 377 269 9 36 chr6 54585122 54585234 -94931803 - PB1 SINE Alu 0 127 19 1 1001 1204 163 42 9 chr6 54585827 54586044 -94930993 + URR1A DNA MER1_type 3 226 0 1 1001 200 388 107 0 chr6 54587598 54587776 -94929261 - MIRb SINE MIR -12 256 60 1 1001 729 243 177 18 chr6 54588132 54588459 -94928578 - MTEa LTR MaLR 0 379 1 1 1001 5006 252 72 20 chr6 54588461 54589912 -94927125 - MTE2b-int LTR MaLR -54 1526 1 1 1001 953 265 136 0 chr6 54589913 54590245 -94926792 - MTE2b LTR MaLR -1 378 2 1 1001 25 31 0 0 chr6 54591798 54591830 -94925207 + AT_rich Low_complexity Low_complexity 1 32 0 1 1001 409 282 42 25 chr6 54592438 54592558 -94924479 + PB1 SINE Alu 1 122 -5 1 1001 332 42 0 0 chr6 54594176 54594224 -94922813 - L1_Mus2 LINE L1 0 6566 6519 1 1001 219 236 0 18 chr6 54597591 54597647 -94919390 + GA-rich Low_complexity Low_complexity 1 55 0 1 1001 227 308 0 0 chr6 54597654 54597745 -94919292 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1001 3438 118 15 7 chr6 54598309 54598846 -94918191 + Lx LINE L1 6113 6653 -1 1 1001 234 91 0 0 chr6 54598847 54598880 -94918157 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 1 1001 732 318 89 56 chr6 54598892 54599408 -94917629 + RMER5 LTR ERV1 1 533 -1 1 1001 450 238 58 45 chr6 54599581 54599735 -94917302 - RMER15 LTR ERVL -17 558 403 1 1001 236 262 16 0 chr6 54599741 54599802 -94917235 - RMER15 LTR ERVL -146 429 368 1 1001 1664 139 153 21 chr6 54599802 54599953 -94917084 + ORR1C2 LTR MaLR 1 170 -214 1 1001 356 111 14 0 chr6 54599953 54600025 -94917012 + (TCTG)n Simple_repeat Simple_repeat 1 73 0 1 1001 1664 139 153 21 chr6 54600025 54600212 -94916825 + ORR1C2 LTR MaLR 171 384 0 1 1001 543 53 0 0 chr6 54600383 54600458 -94916579 + B1_Mus2 SINE Alu 64 138 -9 1 1001 638 58 11 0 chr6 54600471 54600558 -94916479 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1001 398 260 42 0 chr6 54600605 54600701 -94916336 - MamRep38 DNA hAT -192 103 4 1 1001 257 329 14 14 chr6 54600726 54600874 -94916163 + HAL1b LINE L1 190 337 -1672 1 1001 287 321 8 92 chr6 54601101 54601186 -94915851 + PB1D10 SINE Alu 3 83 -34 1 1001 2180 185 11 69 chr6 54601186 54601269 -94915768 + MTC LTR MaLR 1 73 -348 1 1001 1740 16 0 0 chr6 54601269 54601461 -94915576 + B2_Mm1a SINE B2 1 192 -1 1 1001 2180 185 11 69 chr6 54601461 54601824 -94915213 + MTC LTR MaLR 74 421 0 1 1001 287 321 8 92 chr6 54601824 54601858 -94915179 + PB1D10 SINE Alu 84 112 -5 1 1001 840 224 81 30 chr6 54602067 54602338 -94914699 - RMER20B LTR ERVK -215 412 128 1 1001 634 330 105 6 chr6 54602600 54602933 -94914104 + L1MA6 LINE L1 5526 5891 -409 1 1001 684 252 7 0 chr6 54603085 54603232 -94913805 + B1_Mur3 SINE Alu 2 149 0 1 1001 567 0 0 0 chr6 54603445 54603508 -94913529 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1001 969 60 54 12 chr6 54603588 54603756 -94913281 + (GGAAA)n Simple_repeat Simple_repeat 4 178 0 1 1001 419 269 6 77 chr6 54606340 54606509 -94910528 + L1MB4 LINE L1 5919 6075 -105 1 1001 207 0 0 0 chr6 54606630 54606653 -94910384 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1001 22 0 0 0 chr6 54606744 54606766 -94910271 + AT_rich Low_complexity Low_complexity 1 22 0 1 1001 1190 68 0 0 chr6 54607123 54607270 -94909767 - B1_Mm SINE Alu 0 147 1 1 1001 372 243 46 18 chr6 54607662 54607771 -94909266 + MTEb LTR MaLR 268 379 0 1 1001 1121 305 62 52 chr6 54607771 54608373 -94908664 - L1MB8 LINE L1 -167 6011 5404 1 1001 622 139 0 0 chr6 54608400 54608501 -94908536 - RMER19B LTR ERVK -751 151 51 1 1001 336 190 0 0 chr6 54608732 54608790 -94908247 + ID4 SINE ID 13 70 -13 1 1001 3578 62 2 2 chr6 54609021 54609473 -94907564 + L1Md_F2 LINE L1 6131 6582 0 1 1001 287 342 27 7 chr6 54609730 54609877 -94907160 - MIR SINE MIR -103 159 10 1 1001 469 298 25 12 chr6 54611238 54611398 -94905639 + RSINE1 SINE B4 2 163 -2 1 1001 987 44 22 0 chr6 54611404 54611541 -94905496 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 1 1001 873 191 7 8 chr6 54611747 54611903 -94905134 - B1_Mur3 SINE Alu -2 147 1 1 1001 291 54 0 0 chr6 54612555 54612592 -94904445 + (ATG)n Simple_repeat Simple_repeat 2 38 0 1 1001 354 178 11 22 chr6 54612593 54612685 -94904352 + GA-rich Low_complexity Low_complexity 3 93 0 1 1001 1041 113 11 6 chr6 54612685 54612863 -94904174 + (GGA)n Simple_repeat Simple_repeat 2 180 0 1 1001 1210 49 4 21 chr6 54612863 54613095 -94903942 + (GAA)n Simple_repeat Simple_repeat 1 228 0 1 1001 475 255 9 9 chr6 54613171 54613278 -94903759 - ID_B1 SINE B4 -34 190 84 1 1001 246 293 93 17 chr6 54613399 54613517 -94903520 + MamGypLTR2b LTR Gypsy 722 848 -74 1 1001 256 301 194 26 chr6 54614143 54614334 -94902703 - MIRb SINE MIR -5 257 35 1 1001 1174 168 50 32 chr6 54614865 54615086 -94901951 + URR1B DNA MER1_type 1 225 0 1 1001 216 0 0 0 chr6 54615152 54615176 -94901861 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1001 1277 299 94 37 chr6 54615190 54615842 -94901195 + L1MB5 LINE L1 5404 6092 -82 1 1001 3004 222 44 28 chr6 54615970 54616607 -94900430 + Lx9 LINE L1 6695 7340 -304 1 1001 522 0 0 0 chr6 54616607 54616665 -94900372 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1001 3004 222 44 28 chr6 54616665 54616749 -94900288 + Lx9 LINE L1 7341 7428 -216 1 1001 2017 101 24 10 chr6 54616750 54617016 -94900021 - ORR1A2 LTR MaLR 0 327 58 1 1001 5839 41 58 33 chr6 54617016 54617209 -94899828 + RLTR13C2 LTR ERVK 1 193 -615 1 1001 3669 46 2 4 chr6 54617209 54617664 -94899373 - L1Md_F2 LINE L1 0 6582 6129 1 1001 5839 41 58 33 chr6 54617664 54618258 -94898779 + RLTR13C2 LTR ERVK 194 808 0 1 1001 471 91 15 0 chr6 54618258 54618324 -94898713 - ORR1A2 LTR MaLR -260 67 1 1 1001 313 276 20 56 chr6 54618324 54618520 -94898517 + Lx9 LINE L1 7425 7613 -31 1 1001 21 57 0 0 chr6 54618531 54618566 -94898471 + AT_rich Low_complexity Low_complexity 1 35 0 1 1001 1230 41 0 7 chr6 54618570 54618717 -94898320 + B1_Mm SINE Alu 2 147 0 2 1001 365 39 20 0 chr6 54618922 54618973 -94898064 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1001 1024 123 0 14 chr6 54620313 54620461 -94896576 + B1_Mus1 SINE Alu 1 146 -2 2 1001 1661 32 0 0 chr6 54620465 54620653 -94896384 + B2_Mm1a SINE B2 1 188 -5 2 1001 678 244 25 40 chr6 54620740 54620941 -94896096 - B3A SINE B2 0 198 1 2 1001 477 50 0 0 chr6 54621312 54621372 -94895665 + (GGGGA)n Simple_repeat Simple_repeat 1 60 0 2 1001 383 367 76 10 chr6 54622024 54622222 -94894815 + MLT1K LTR MaLR 295 505 -90 2 1001 318 50 0 0 chr6 54622235 54622275 -94894762 + (CAT)n Simple_repeat Simple_repeat 3 42 0 2 1001 375 23 0 0 chr6 54622278 54622322 -94894715 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1001 530 319 14 0 chr6 54622333 54622477 -94894560 - RSINE1 SINE B4 -19 146 1 2 1001 507 350 12 6 chr6 54622521 54622685 -94894352 - MER2B DNA MER2_type -7 329 165 2 1001 673 221 182 10 chr6 54622686 54622878 -94894159 - MTD LTR MaLR 0 419 195 2 1001 827 228 30 52 chr6 54622880 54623111 -94893926 - ORR1D1 LTR MaLR -55 319 94 2 1001 2585 205 18 80 chr6 54623129 54623627 -94893410 - ORR1D1-int LTR MaLR -18 1352 893 2 1001 1153 75 7 0 chr6 54623627 54623773 -94893264 - B1_Mus1 SINE Alu 0 148 2 2 1001 2585 205 18 80 chr6 54623773 54623890 -94893147 - ORR1D1-int LTR MaLR -478 892 775 2 1001 574 223 10 0 chr6 54623881 54623984 -94893053 - B3 SINE B2 -102 114 11 2 1001 878 194 5 48 chr6 54624004 54624193 -94892844 - B2_Mm2 SINE B2 -3 192 12 2 1001 2262 185 40 164 chr6 54624193 54624890 -94892147 - RMER19C LTR ERVK 0 611 1 2 1001 471 149 15 20 chr6 54625340 54625531 -94891506 + CT-rich Low_complexity Low_complexity 1 190 0 2 1001 734 160 26 59 chr6 54625531 54625684 -94891353 - B1_Mus1 SINE Alu 0 148 1 2 1001 350 223 149 74 chr6 54626196 54626292 -94890745 - MTEa LTR MaLR 0 379 274 2 1001 1681 201 56 17 chr6 54626292 54626652 -94890385 + ORR1D1 LTR MaLR 1 374 0 2 1001 350 223 149 74 chr6 54626652 54626676 -94890361 - MTEa LTR MaLR -106 273 250 2 1001 407 326 132 95 chr6 54626674 54626969 -94890068 - ORR1E LTR MaLR -53 306 1 2 1001 217 116 0 44 chr6 54627414 54627459 -94889578 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 2 1001 469 271 68 0 chr6 54627472 54627605 -94889432 - B1F SINE Alu -7 142 1 2 1001 1347 70 27 11 chr6 54627878 54628066 -94888971 + B2_Mm2 SINE B2 2 192 -3 2 1001 277 250 15 0 chr6 54628131 54628199 -94888838 + ID4_ SINE ID 3 71 -12 2 1001 1150 267 39 48 chr6 54628334 54628665 -94888372 - MTD LTR MaLR -44 375 48 2 1001 186 43 0 0 chr6 54628689 54628712 -94888325 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1001 256 270 0 39 chr6 54629038 54629115 -94887922 + ID4_ SINE ID 3 76 -7 2 1001 315 0 0 0 chr6 54629156 54629191 -94887846 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1001 1834 232 36 30 chr6 54629255 54629726 -94887311 + RMER19C LTR ERVK 138 611 0 2 1001 894 222 35 10 chr6 54630238 54630438 -94886599 + B3 SINE B2 2 206 -10 2 1001 441 0 0 0 chr6 54630480 54630529 -94886508 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1001 205 134 27 26 chr6 54630544 54630596 -94886441 - MIRc SINE MIR -93 169 118 2 1001 199 200 197 15 chr6 54630562 54630628 -94886409 - MIRm SINE MIR -122 154 77 2 1001 233 261 15 184 chr6 54630798 54630934 -94886103 + L2c LINE L2 3272 3384 -3 2 1001 271 208 96 14 chr6 54631076 54631149 -94885888 + ID4_ SINE ID 2 80 -3 2 1001 205 284 11 22 chr6 54631666 54631756 -94885281 + G-rich Low_complexity Low_complexity 5 93 0 2 1001 445 176 0 26 chr6 54633866 54633942 -94883095 - B4A SINE B4 -216 76 3 2 1001 295 238 90 13 chr6 54633955 54634042 -94882995 - MIRb SINE MIR -65 203 102 2 1001 249 277 30 6 chr6 54635143 54635235 -94881802 + MIRc SINE MIR 69 167 -109 2 1001 421 349 56 20 chr6 54635407 54635603 -94881434 - MER2 DNA MER2_type -17 328 126 2 1001 231 36 0 0 chr6 54635765 54635793 -94881244 + (CCCTG)n Simple_repeat Simple_repeat 3 30 0 2 1001 180 259 35 53 chr6 54635988 54636045 -94880992 - MER5A DNA MER1_type -90 99 44 2 1001 201 414 0 0 chr6 54636243 54636354 -94880683 + L4 LINE RTE 960 1070 -959 2 1001 204 216 0 0 chr6 54636404 54636455 -94880582 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1001 693 243 120 11 chr6 54636704 54636895 -94880142 - B3 SINE B2 0 216 5 2 1001 190 75 49 24 chr6 54640171 54640212 -94876825 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2 1001 786 188 7 0 chr6 54642564 54642702 -94874335 + B1_Mus2 SINE Alu 9 147 0 2 1001 185 139 23 0 chr6 54642704 54642747 -94874290 + A-rich Low_complexity Low_complexity 3 46 0 2 1001 207 288 88 0 chr6 54644008 54644088 -94872949 + MIRc SINE MIR 31 117 -151 2 1001 6723 96 2 0 chr6 54644785 54645792 -94871245 - L1_Mus3 LINE L1 -716 5922 4913 2 1001 5421 71 3 3 chr6 54645792 54646497 -94870540 + L1_Mus3 LINE L1 5934 6638 0 2 1001 184 281 191 0 chr6 54647441 54647530 -94869507 + L4 LINE RTE 251 356 -1673 2 1001 448 224 163 37 chr6 54647631 54647821 -94869216 + B3 SINE B2 1 214 -2 2 1001 693 236 108 0 chr6 54647922 54648079 -94868958 + B3 SINE B2 40 213 -3 2 1001 21 95 0 0 chr6 54648084 54648147 -94868890 + AT_rich Low_complexity Low_complexity 1 63 0 2 1001 360 0 0 0 chr6 54648201 54648241 -94868796 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1001 28 0 0 0 chr6 54650056 54650084 -94866953 + AT_rich Low_complexity Low_complexity 1 28 0 2 1001 275 0 0 28 chr6 54655261 54655297 -94861740 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1001 316 261 105 32 chr6 54656437 54656532 -94860505 - ID_B1 SINE B4 -15 209 108 2 1001 275 96 19 0 chr6 54656592 54656644 -94860393 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 2 1001 324 256 33 99 chr6 54656644 54656796 -94860241 - MIR SINE MIR -121 147 6 2 1002 438 239 37 70 chr6 54657834 54657986 -94859051 + B1F SINE Alu 2 145 -4 2 1002 242 294 77 31 chr6 54658438 54658582 -94858455 - RSINE1 SINE B4 -3 289 82 2 1002 1918 157 78 9 chr6 54658585 54658919 -94858118 - ORR1B2 LTR MaLR -8 359 3 2 1002 212 264 82 97 chr6 54658921 54659055 -94857982 - B4A SINE B4 -151 141 10 2 1002 361 310 105 59 chr6 54659208 54659623 -94857414 + L1MDa LINE L1 1014 1445 -5082 2 1002 227 243 29 0 chr6 54659708 54659778 -94857259 + L1M2 LINE L1 2192 2263 -4516 2 1002 267 331 0 40 chr6 54659996 54660144 -94856893 + L1M2 LINE L1 2493 2634 -4215 2 1002 2459 165 5 5 chr6 54660186 54660607 -94856430 + MTC LTR MaLR 1 421 0 2 1002 290 0 75 0 chr6 54660780 54660820 -94856217 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 2 1002 1728 306 88 119 chr6 54660841 54661662 -94855375 + L1M2 LINE L1 2909 3794 -3048 2 1002 651 26 0 0 chr6 54661662 54661739 -94855298 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 1002 1728 300 80 133 chr6 54661739 54663061 -94853976 + L1M2 LINE L1 3795 5037 -1805 2 1002 222 118 0 0 chr6 54663061 54663095 -94853942 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1002 1728 300 80 133 chr6 54663095 54664152 -94852885 + L1M2 LINE L1 5038 6007 -835 2 1002 1604 186 26 18 chr6 54664152 54664491 -94852546 + Lx9 LINE L1 7301 7642 -2 2 1002 1728 302 98 118 chr6 54664491 54664896 -94852141 + L1M2 LINE L1 5979 6445 -137 2 1002 333 0 0 0 chr6 54664966 54665003 -94852034 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1002 600 53 0 0 chr6 54665003 54665078 -94851959 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1002 299 286 85 9 chr6 54665305 54665411 -94851626 + B1F SINE Alu 20 133 -16 2 1002 186 208 0 0 chr6 54665425 54665478 -94851559 + GA-rich Low_complexity Low_complexity 1 53 0 2 1002 254 321 37 0 chr6 54666430 54666511 -94850526 + RSINE1 SINE B4 4 87 -78 2 1002 252 0 0 0 chr6 54666515 54666543 -94850494 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1002 603 116 0 0 chr6 54666543 54666655 -94850382 + (GA)n Simple_repeat Simple_repeat 1 112 0 2 1002 867 251 40 20 chr6 54666674 54666873 -94850164 + B3 SINE B2 9 211 -5 2 1002 2015 205 58 2 chr6 54667867 54668263 -94848774 - MTD LTR MaLR 0 419 2 2 1002 234 315 82 0 chr6 54668817 54668890 -94848147 - MIRb SINE MIR -189 79 1 2 1002 184 340 48 19 chr6 54669097 54669202 -94847835 + L2c LINE L2 3267 3374 -13 2 1002 1687 26 0 0 chr6 54669204 54669394 -94847643 + B2_Mm1a SINE B2 1 190 -3 2 1002 231 36 0 0 chr6 54669397 54669425 -94847612 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1002 189 74 0 0 chr6 54669435 54669462 -94847575 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2 1002 219 217 0 0 chr6 54669661 54669707 -94847330 + C-rich Low_complexity Low_complexity 1 46 0 2 1002 335 304 53 46 chr6 54671314 54671346 -94845691 + L1M LINE L1 5274 5307 -817 2 1002 3008 164 40 50 chr6 54671346 54671925 -94845112 - RMER15 LTR ERVL 0 575 3 2 1002 335 304 53 46 chr6 54671925 54672044 -94844993 + L1M LINE L1 5308 5426 -698 2 1002 414 0 0 0 chr6 54672231 54672277 -94844760 + (ATATG)n Simple_repeat Simple_repeat 5 50 0 2 1002 339 222 86 0 chr6 54673304 54673385 -94843652 - B3 SINE B2 -17 199 112 2 1002 356 371 69 10 chr6 54673388 54673592 -94843445 - L1M2 LINE L1 -2969 3174 2959 2 1002 226 167 0 0 chr6 54673614 54673662 -94843375 + RMER21A LTR ERV1 419 466 -481 2 1002 728 289 69 106 chr6 54673652 54674190 -94842847 + RMER21B LTR ERV1 268 785 -57 2 1002 575 291 0 41 chr6 54674373 54674520 -94842517 + RSINE1 SINE B4 3 143 -22 2 1002 339 242 35 121 chr6 54674489 54674524 -94842513 + MT2B2 LTR ERVL 106 137 -447 2 1002 414 0 0 0 chr6 54674524 54674570 -94842467 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1002 339 242 35 121 chr6 54674570 54674593 -94842444 + MT2B2 LTR ERVL 138 149 -435 2 1002 619 219 0 17 chr6 54674593 54674709 -94842328 + B1_Mus1 SINE Alu 1 114 -34 2 1002 180 0 0 0 chr6 54674709 54674729 -94842308 + (TAA)n Simple_repeat Simple_repeat 1 20 0 2 1002 319 284 37 0 chr6 54674746 54674827 -94842210 - L1M2 LINE L1 -3276 2867 2784 2 1002 4502 157 52 72 chr6 54674842 54675750 -94841287 + RMER19B LTR ERVK 1 890 -12 3 1002 362 284 0 0 chr6 54675765 54675874 -94841163 - L1M2 LINE L1 -3375 2768 2660 2 1002 831 240 59 0 chr6 54676098 54676302 -94840735 + B3 SINE B2 1 216 0 3 1002 532 335 137 34 chr6 54677630 54677859 -94839178 - MLT1F2 LTR MaLR -12 548 298 3 1002 2617 49 65 0 chr6 54677859 54678184 -94838853 - ORR1A1 LTR MaLR 0 346 1 3 1002 532 335 137 34 chr6 54678184 54678451 -94838586 - MLT1F2 LTR MaLR -263 297 2 3 1002 297 314 91 21 chr6 54679323 54679466 -94837571 + MIRb SINE MIR 95 247 -21 3 1002 321 357 24 8 chr6 54679476 54679603 -94837434 + L2b LINE L2 3247 3375 0 3 1002 252 0 0 0 chr6 54679958 54679986 -94837051 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1002 1159 95 0 0 chr6 54679986 54680134 -94836903 - B1_Mus1 SINE Alu 0 148 1 3 1002 1778 284 4 36 chr6 54680161 54680629 -94836408 - Lx6 LINE L1 -28 7432 6980 3 1002 371 273 0 11 chr6 54680979 54681068 -94835969 - Lx7 LINE L1 -778 6918 6831 3 1002 852 352 20 6 chr6 54681082 54681425 -94835612 - Lx7 LINE L1 -1179 6517 6170 3 1002 207 349 26 52 chr6 54681725 54681840 -94835197 - MIRm SINE MIR -19 257 146 3 1002 198 0 0 0 chr6 54682077 54682099 -94834938 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1002 245 300 12 48 chr6 54682511 54682595 -94834442 - ID2 SINE ID -2 81 1 3 1002 303 241 49 37 chr6 54683518 54683600 -94833437 - ID4_ SINE ID 0 83 1 3 1002 882 204 102 0 chr6 54683626 54683822 -94833215 + B3 SINE B2 1 216 0 3 1002 283 226 187 47 chr6 54684066 54684173 -94832864 + MER3 DNA MER1_type 81 202 -7 3 1002 198 342 108 36 chr6 54684891 54685058 -94831979 + MIRc SINE MIR 37 215 -53 3 1002 468 262 58 32 chr6 54685391 54685545 -94831492 + MER58A DNA MER1_type 55 212 -12 3 1002 229 128 20 60 chr6 54685669 54685719 -94831318 + Lx8 LINE L1 7037 7084 -389 3 1002 392 307 65 14 chr6 54685978 54686117 -94830920 + RMER15 LTR ERVL 426 571 -4 3 1002 992 293 167 59 chr6 54686070 54686796 -94830241 + Zaphod DNA Tip100 205 1008 -3023 3 1002 345 47 0 0 chr6 54686824 54686867 -94830170 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1002 286 289 13 13 chr6 54687461 54687538 -94829499 - L2b LINE L2 0 3375 3299 3 1002 335 285 138 58 chr6 54687648 54687786 -94829251 + MER21B LTR ERV1 98 246 -617 3 1002 429 311 150 36 chr6 54687901 54688148 -94828889 + MER21B LTR ERV1 452 726 -137 3 1002 477 0 0 0 chr6 54688376 54688429 -94828608 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1002 312 363 0 0 chr6 54688828 54688919 -94828118 + MLT1K LTR MaLR 205 295 -300 3 1002 228 170 0 41 chr6 54688995 54689044 -94827993 + C-rich Low_complexity Low_complexity 2 48 0 3 1002 764 233 56 86 chr6 54690877 54691074 -94825963 + RMER30 DNA MER1_type 11 201 -1 3 1002 1315 179 164 48 chr6 54691232 54691567 -94825470 + ORR1D1 LTR MaLR 1 374 0 3 1002 350 260 57 9 chr6 54693303 54693408 -94823629 - MER66-int LTR ERV1 -5026 1650 1541 3 1002 1269 241 65 30 chr6 54693624 54693962 -94823075 + MTD LTR MaLR 68 417 -2 3 1002 459 0 0 0 chr6 54694117 54694168 -94822869 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1002 1121 82 0 14 chr6 54694329 54694477 -94822560 - B1_Mus2 SINE Alu -1 146 1 3 1002 360 0 0 0 chr6 54694623 54694663 -94822374 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1002 4744 158 57 37 chr6 54695255 54696140 -94820897 - RMER19B LTR ERVK 0 902 1 3 1002 1116 205 5 36 chr6 54696288 54696511 -94820526 - B3 SINE B2 0 216 1 3 1002 279 257 19 29 chr6 54696899 54697003 -94820034 + (TG)n Simple_repeat Simple_repeat 1 103 0 3 1002 2236 79 9 60 chr6 54697832 54698168 -94818869 + ORR1A2 LTR MaLR 1 319 -8 3 1002 263 263 198 45 chr6 54698725 54698968 -94818069 + B4 SINE B4 1 280 -12 3 1002 627 293 144 16 chr6 54699492 54699735 -94817302 - B4 SINE B4 -18 274 1 3 1002 252 0 0 0 chr6 54699750 54699778 -94817259 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 3 1002 703 248 0 0 chr6 54699778 54699915 -94817122 - B1_Mur3 SINE Alu -12 137 1 3 1002 771 287 66 70 chr6 54700731 54700944 -94816093 + B4 SINE B4 16 236 -56 3 1002 1099 281 46 22 chr6 54700944 54701311 -94815726 + MTEa LTR MaLR 1 376 -3 3 1002 771 287 66 70 chr6 54701311 54701370 -94815667 + B4 SINE B4 237 287 -5 3 1002 301 337 10 40 chr6 54702646 54702745 -94814292 + PB1D10 SINE Alu 1 96 -21 3 1002 1007 84 13 40 chr6 54702758 54702907 -94814130 + B1_Mus1 SINE Alu 2 146 -2 3 1002 464 14 13 40 chr6 54703562 54703638 -94813399 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 3 1002 380 308 80 37 chr6 54703858 54704020 -94813017 + MIR SINE MIR 15 183 -79 3 1002 227 229 25 136 chr6 54704111 54704192 -94812845 + L1MA8 LINE L1 6162 6233 -58 3 1002 1122 180 19 23 chr6 54704326 54704542 -94812495 + B3 SINE B2 2 216 0 3 1002 581 244 23 12 chr6 54704722 54704886 -94812151 - B3 SINE B2 0 195 27 3 1002 2739 28 0 0 chr6 54705614 54705939 -94811098 + IAPEY2_LTR LTR ERVK 33 357 0 3 1002 1431 206 24 135 chr6 54705932 54706354 -94810683 + MTE2a LTR MaLR 1 375 -4 3 1002 222 218 5 0 chr6 54706712 54706761 -94810276 - MIRm SINE MIR -108 160 111 3 1002 1384 77 11 0 chr6 54706791 54706973 -94810064 - B2_Mm1t SINE B2 -9 184 1 3 1002 581 298 150 46 chr6 54707012 54707272 -94809765 - MLT1A1 LTR MaLR -1 407 121 3 1002 254 316 153 59 chr6 54708558 54708780 -94808257 + MLT1B LTR MaLR 5 247 -143 3 1002 1538 202 46 46 chr6 54708862 54709272 -94807765 + RMER17C LTR ERVK 1 410 0 3 1002 250 359 0 21 chr6 54709287 54709381 -94807656 + MLT1B LTR MaLR 290 381 -9 3 1002 260 53 0 26 chr6 54710469 54710508 -94806529 + (CCCCCA)n Simple_repeat Simple_repeat 2 39 0 3 1002 528 217 39 15 chr6 54710557 54710690 -94806347 - L1MB4 LINE L1 -17 6154 6027 3 1002 2074 132 3 54 chr6 54710802 54711171 -94805866 + RMER10B LTR ERVL 48 397 -1 3 1002 323 248 248 0 chr6 54711423 54711536 -94805501 + B1F SINE Alu 1 141 -8 3 1002 1212 191 93 21 chr6 54712671 54712834 -94804203 + RMER17C LTR ERVK 1 180 -230 3 1002 417 39 0 0 chr6 54712834 54712885 -94804152 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1002 1212 191 93 21 chr6 54712885 54713096 -94803941 + RMER17C LTR ERVK 181 402 -8 3 1002 465 19 0 0 chr6 54713128 54713182 -94803855 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1002 216 67 0 0 chr6 54713882 54713912 -94803125 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1002 996 293 67 103 chr6 54713928 54714483 -94802554 - RLTR18 LTR ERVK 0 616 82 3 1002 496 299 129 60 chr6 54714472 54714821 -94802216 + MLT1J LTR MaLR 29 401 -111 3 1002 229 374 24 35 chr6 54714916 54715085 -94801952 - L2 LINE L2 -1317 2102 1936 3 1002 231 257 24 129 chr6 54715139 54715189 -94801848 + BC1_Mm scRNA scRNA 17 66 -86 3 1002 504 0 0 0 chr6 54715189 54715245 -94801792 + (GGAA)n Simple_repeat Simple_repeat 4 59 0 3 1002 231 257 24 129 chr6 54715245 54715279 -94801758 + BC1_Mm scRNA scRNA 67 92 -60 3 1002 460 304 58 91 chr6 54715331 54715660 -94801377 - MLT1H2 LTR MaLR 0 489 174 3 1002 210 238 16 16 chr6 54715681 54715745 -94801292 + BC1_Mm scRNA scRNA 48 111 -41 3 1002 258 186 84 14 chr6 54715986 54716057 -94800980 + L1MA10 LINE L1 6211 6286 -48 3 1002 793 180 16 0 chr6 54716367 54716495 -94800542 + B3 SINE B2 1 130 -86 3 1002 195 139 0 0 chr6 54717189 54717225 -94799812 + (CGGGG)n Simple_repeat Simple_repeat 1 36 0 3 1002 2623 137 9 11 chr6 54718238 54718675 -94798362 + RMER10A LTR ERVL 1 436 -6 3 1002 227 312 12 38 chr6 54718807 54718887 -94798150 + ID4_ SINE ID 4 81 -2 3 1002 201 74 0 0 chr6 54718922 54718949 -94798088 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1002 1216 55 0 0 chr6 54719017 54719163 -94797874 - B1_Mm SINE Alu 0 147 2 3 1002 387 0 0 0 chr6 54719512 54719555 -94797482 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1002 957 236 54 61 chr6 54720008 54720302 -94796735 + B4A SINE B4 1 292 0 3 1002 450 53 0 0 chr6 54720327 54720384 -94796653 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1002 399 269 157 51 chr6 54720401 54720753 -94796284 - MLT1J LTR MaLR -81 431 5 3 1002 726 329 100 30 chr6 54721338 54721593 -94795444 + MLT1F LTR MaLR 1 264 -284 3 1002 201 39 0 0 chr6 54721593 54721619 -94795418 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1002 726 329 100 30 chr6 54721619 54721865 -94795172 + MLT1F LTR MaLR 265 536 -12 3 1002 274 280 79 10 chr6 54721865 54721966 -94795071 - MIRc SINE MIR -114 154 47 3 1002 772 132 124 0 chr6 54721979 54722108 -94794929 - B1_Mur3 SINE Alu 0 149 5 3 1002 1501 156 8 8 chr6 54722125 54722365 -94794672 - MTC LTR MaLR -8 413 174 3 1002 1318 160 231 37 chr6 54722772 54723123 -94793914 - MTD LTR MaLR 0 419 1 3 1002 6745 238 70 26 chr6 54723386 54725128 -94791909 + Lx7 LINE L1 5597 7414 -282 3 1002 433 230 110 0 chr6 54725415 54725515 -94791522 - PB1D7 SINE Alu -9 111 1 3 1002 1506 197 61 53 chr6 54725864 54726153 -94790884 + ORR1C1 LTR MaLR 1 304 -74 3 1002 384 77 0 0 chr6 54726153 54726205 -94790832 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1002 1506 197 61 53 chr6 54726205 54726290 -94790747 + ORR1C1 LTR MaLR 305 378 0 3 1002 981 39 0 0 chr6 54727084 54727211 -94789826 + B1_Mus1 SINE Alu 13 139 -9 3 1002 402 21 0 0 chr6 54727211 54727258 -94789779 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 1002 2733 133 74 8 chr6 54728328 54728843 -94788194 - RMER15 LTR ERVL 0 575 27 3 1002 286 243 43 0 chr6 54728876 54728946 -94788091 - ID4_ SINE ID -10 73 1 3 1002 3045 57 23 10 chr6 54729315 54729705 -94787332 - MTA_Mm LTR MaLR 0 396 2 3 1002 394 298 0 32 chr6 54729733 54729858 -94787179 + RSINE1 SINE B4 4 124 -41 3 1002 194 105 26 0 chr6 54729858 54729896 -94787141 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1002 221 182 0 18 chr6 54729899 54729955 -94787082 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 4 1002 1093 256 125 17 chr6 54730752 54731177 -94785860 - Lx8 LINE L1 -1553 5920 5425 4 1002 180 0 0 0 chr6 54731178 54731198 -94785839 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1002 1156 301 54 21 chr6 54731437 54731953 -94785084 + MT2A LTR ERVL 1 533 0 4 1002 230 289 64 43 chr6 54732458 54732552 -94784485 - PB1D10 SINE Alu -19 98 3 4 1002 279 79 0 0 chr6 54732804 54732842 -94784195 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1002 22 0 0 0 chr6 54733109 54733131 -94783906 + AT_rich Low_complexity Low_complexity 1 22 0 4 1002 2971 197 48 23 chr6 54733323 54733921 -94783116 - Lx5 LINE L1 -552 6498 5886 4 1002 2379 227 38 32 chr6 54733914 54734339 -94782698 + Lx5 LINE L1 6493 6926 -124 4 1002 1242 54 0 0 chr6 54734339 54734487 -94782550 + B1_Mus1 SINE Alu 1 148 0 4 1002 2379 227 38 32 chr6 54734487 54734616 -94782421 + Lx5 LINE L1 6927 7050 0 4 1002 243 125 0 0 chr6 54734716 54734756 -94782281 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1002 522 275 15 15 chr6 54734784 54734917 -94782120 - B4A SINE B4 -32 260 128 4 1002 222 37 0 0 chr6 54734917 54734944 -94782093 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1002 189 0 0 0 chr6 54734956 54734977 -94782060 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1002 219 69 0 0 chr6 54735137 54735166 -94781871 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1002 326 253 12 12 chr6 54735876 54735956 -94781081 + ID4_ SINE ID 1 80 -3 4 1002 287 258 117 11 chr6 54736712 54736806 -94780231 - PB1D10 SINE Alu -13 104 1 4 1002 193 302 0 19 chr6 54737058 54737112 -94779925 + L2b LINE L2 3225 3277 -98 4 1002 383 273 9 18 chr6 54737267 54737379 -94779658 - PB1D7 SINE Alu -7 113 3 4 1002 239 167 15 0 chr6 54737697 54737763 -94779274 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1002 324 115 0 19 chr6 54737769 54737822 -94779215 + HAL1-3A_ME LINE L1 1976 2027 -831 4 1002 769 277 63 16 chr6 54737825 54738144 -94778893 - L1MA5 LINE L1 -375 5925 5592 4 1002 307 308 37 116 chr6 54738438 54738779 -94778258 - MLT1A1 LTR MaLR 0 408 59 4 1002 2132 137 52 61 chr6 54739529 54739838 -94777199 - BGLII_B LTR ERVK 0 441 145 4 1002 203 0 37 0 chr6 54739838 54739865 -94777172 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1002 2132 137 52 61 chr6 54739865 54739998 -94777039 - BGLII_B LTR ERVK -297 144 3 4 1002 392 272 9 28 chr6 54740633 54740739 -94776298 - PB1D10 SINE Alu -1 116 13 4 1002 657 249 71 52 chr6 54741170 54741351 -94775686 + B3 SINE B2 1 194 -22 4 1002 242 56 28 0 chr6 54741351 54741387 -94775650 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1002 657 249 71 52 chr6 54741387 54741417 -94775620 + B3 SINE B2 195 216 0 4 1002 444 304 78 13 chr6 54743210 54743440 -94773597 - MLT1A LTR MaLR -98 276 32 4 1002 305 343 39 0 chr6 54743471 54743573 -94773464 - PB1D10 SINE Alu -8 109 4 4 1002 1315 67 22 22 chr6 54743692 54743876 -94773161 + B2_Mm2 SINE B2 2 185 -10 4 1002 399 200 62 21 chr6 54743882 54743979 -94773058 + PB1D9 SINE Alu 13 113 -7 4 1002 345 261 0 13 chr6 54744193 54744311 -94772726 + MIRc SINE MIR 34 145 -63 4 1002 310 306 8 8 chr6 54744567 54744694 -94772343 - MIR SINE MIR -99 169 39 4 1002 545 283 180 7 chr6 54745089 54745367 -94771670 + L1M4 LINE L1 708 1033 -5509 4 1002 468 302 0 0 chr6 54745523 54745649 -94771388 - RSINE1 SINE B4 -38 127 2 4 1002 567 212 29 7 chr6 54745685 54745821 -94771216 + MER2 DNA MER2_type 86 224 -121 4 1002 220 344 0 0 chr6 54745821 54745832 -94771205 + ID4_ SINE ID 1 61 -19 4 1002 243 200 0 0 chr6 54745832 54745882 -94771155 + tRNA-Ala-GCA tRNA tRNA 6 55 -20 4 1002 514 298 80 36 chr6 54746370 54746645 -94770392 + B4A SINE B4 2 288 -4 4 1002 408 88 0 0 chr6 54746677 54746734 -94770303 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1002 499 309 108 10 chr6 54747109 54747406 -94769631 - L1M4 LINE L1 -5863 679 354 4 1002 250 207 132 12 chr6 54747790 54747873 -94769164 - MTE2b LTR MaLR -44 335 243 4 1002 3366 179 30 65 chr6 54747873 54748693 -94768344 - L1_Mur3 LINE L1 -2555 3325 2534 4 1002 698 242 55 55 chr6 54748693 54748947 -94768090 - MT2B LTR ERVL -70 531 278 4 1002 1041 187 0 0 chr6 54748947 54749134 -94767903 + L1_Mur3 LINE L1 1729 1915 -3965 4 1002 226 184 0 0 chr6 54749134 54749172 -94767865 - MT2B LTR ERVL -404 129 92 4 1002 442 238 0 9 chr6 54749195 54749301 -94767736 - MT2B LTR ERVL -428 105 1 4 1002 5360 203 41 37 chr6 54749301 54750956 -94766081 - L1_Mur3 LINE L1 -3365 2515 844 4 1002 764 203 0 75 chr6 54751477 54751637 -94765400 - B1_Mur2 SINE Alu -1 148 1 4 1002 1539 204 62 20 chr6 54751727 54751957 -94765080 + ORR1D1 LTR MaLR 1 243 -131 4 1002 579 51 0 0 chr6 54751957 54752036 -94765001 + (CCTG)n Simple_repeat Simple_repeat 3 81 0 4 1002 1539 204 62 20 chr6 54752036 54752160 -94764877 + ORR1D1 LTR MaLR 244 369 -5 4 1002 450 211 21 0 chr6 54753098 54753193 -94763844 + ORR1D1 LTR MaLR 1 97 -277 4 1002 1293 233 73 33 chr6 54753558 54753957 -94763080 + MTD LTR MaLR 5 419 0 4 1002 207 69 0 0 chr6 54754667 54754696 -94762341 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 4 1002 242 326 45 0 chr6 54754977 54755066 -94761971 + PB1D7 SINE Alu 10 102 -18 4 1002 272 281 12 0 chr6 54755356 54755438 -94761599 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 1002 457 287 26 0 chr6 54755651 54755766 -94761271 + PB1D7 SINE Alu 2 119 -1 4 1002 271 269 26 44 chr6 54756145 54756258 -94760779 - Charlie18a DNA MER1_type -1 341 231 4 1002 444 37 0 0 chr6 54756904 54756958 -94760079 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1002 216 372 11 11 chr6 54756967 54757054 -94759983 - PB1 SINE Alu -40 87 1 4 1002 2363 84 19 6 chr6 54757319 54757642 -94759395 - ORR1A2 LTR MaLR 0 327 1 4 1002 450 321 67 49 chr6 54757915 54758200 -94758837 + B4A SINE B4 3 292 0 4 1002 256 276 13 0 chr6 54758642 54758718 -94758319 - L1MB3 LINE L1 -28 6155 6079 4 1002 266 308 13 0 chr6 54758778 54758856 -94758181 + ID4 SINE ID 1 79 -4 4 1002 324 0 0 0 chr6 54759327 54759363 -94757674 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1002 231 36 0 0 chr6 54760550 54760578 -94756459 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 4 1002 393 58 0 0 chr6 54760679 54760731 -94756306 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1002 1107 80 0 0 chr6 54760731 54760869 -94756168 - B1_Mus1 SINE Alu -6 142 5 4 1002 498 276 84 50 chr6 54760895 54761097 -94755940 - MLT1D LTR MaLR -296 209 1 4 1002 721 211 14 0 chr6 54761121 54761268 -94755769 + B1_Mur4 SINE Alu 1 149 -1 4 1002 258 247 123 0 chr6 54761582 54761655 -94755382 + ID4 SINE ID 2 83 0 4 1002 225 154 0 0 chr6 54763317 54763356 -94753681 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 1002 777 79 0 0 chr6 54763373 54763487 -94753550 - B1_Mus1 SINE Alu 0 148 35 4 1002 675 276 36 32 chr6 54763501 54763722 -94753315 - B4A SINE B4 -68 224 3 4 1002 26 0 0 0 chr6 54763732 54763758 -94753279 + AT_rich Low_complexity Low_complexity 1 26 0 4 1002 219 200 169 0 chr6 54764899 54764964 -94752073 + RSINE1 SINE B4 67 142 -23 4 1002 252 86 0 0 chr6 54764975 54765010 -94752027 + (CATA)n Simple_repeat Simple_repeat 4 38 0 4 1002 199 175 17 17 chr6 54765352 54765410 -94751627 + CT-rich Low_complexity Low_complexity 3 60 0 4 1002 394 240 21 10 chr6 54765412 54765509 -94751528 - PB1 SINE Alu -9 118 21 4 1002 909 191 67 26 chr6 54765558 54765751 -94751286 + B3 SINE B2 3 203 -13 4 1002 234 0 0 0 chr6 54765765 54765791 -94751246 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1002 228 245 20 30 chr6 54766814 54766915 -94750122 + (CGG)n Simple_repeat Simple_repeat 2 101 0 4 1002 243 61 0 0 chr6 54766957 54766990 -94750047 + (CTCG)n Simple_repeat Simple_repeat 4 36 0 4 1002 23 54 0 0 chr6 54767091 54767128 -94749909 + GC_rich Low_complexity Low_complexity 1 37 0 4 1002 180 77 0 0 chr6 54767177 54767203 -94749834 + (CGG)n Simple_repeat Simple_repeat 3 28 0 4 1002 26 30 0 0 chr6 54767383 54767416 -94749621 + GC_rich Low_complexity Low_complexity 1 33 0 4 1002 1069 84 0 14 chr6 54768230 54768374 -94748663 - B1_Mus2 SINE Alu -3 144 3 4 1002 257 207 47 73 chr6 54768569 54768680 -94748357 - BC1_Mm scRNA scRNA -41 111 3 4 1002 27 0 0 0 chr6 54768846 54768873 -94748164 + AT_rich Low_complexity Low_complexity 1 27 0 4 1002 269 287 86 29 chr6 54769157 54769297 -94747740 + MER105 DNA DNA 2 149 -55 4 1002 370 289 162 37 chr6 54771470 54771686 -94745351 - MLT1E1A LTR MaLR 0 680 438 4 1002 245 338 0 0 chr6 54771767 54771838 -94745199 + CT-rich Low_complexity Low_complexity 2 72 0 4 1002 1048 62 20 20 chr6 54771839 54771988 -94745049 - B1_Mur4 SINE Alu 0 150 2 4 1002 702 292 41 67 chr6 54772074 54772202 -94744835 - L1MA4 LINE L1 -363 5949 5823 4 1002 693 266 38 29 chr6 54772202 54772411 -94744626 - B3 SINE B2 -5 211 1 4 1002 702 267 42 73 chr6 54772411 54772699 -94744338 - L1MA4 LINE L1 -478 5822 5512 4 1002 307 333 142 0 chr6 54772733 54772853 -94744184 - MLT1F2 LTR MaLR -423 137 1 4 1002 3010 17 3 25 chr6 54772950 54773304 -94743733 + ORR1A0 LTR MaLR 1 346 0 4 1002 4417 52 16 2 chr6 54773304 54773940 -94743097 + ORR1A0-int LTR MaLR 1 645 -1147 4 1002 5485 24 17 1 chr6 54773939 54774646 -94742391 + ORR1A0-int LTR MaLR 1075 1792 0 4 1002 2886 29 18 0 chr6 54774646 54774986 -94742051 + ORR1A0 LTR MaLR 1 346 0 4 1002 371 202 11 0 chr6 54776226 54776315 -94740722 + (TA)n Simple_repeat Simple_repeat 1 90 0 4 1002 348 173 200 0 chr6 54776774 54776849 -94740188 + B3A SINE B2 21 110 -88 4 1002 28 0 0 0 chr6 54776855 54776883 -94740154 + AT_rich Low_complexity Low_complexity 1 28 0 4 1002 714 188 13 46 chr6 54776889 54777040 -94739997 + B1_Mur4 SINE Alu 5 150 0 4 1002 4435 147 98 14 chr6 54777277 54778093 -94738944 + RMER19B LTR ERVK 1 885 -17 4 1002 1142 76 0 0 chr6 54778093 54778237 -94738800 + B1_Mus1 SINE Alu 1 144 -4 5 1002 473 293 128 34 chr6 54778308 54778573 -94738464 - B4A SINE B4 -2 290 1 5 1002 307 204 38 35 chr6 54778573 54778706 -94738331 - B4 SINE B4 -62 230 1 5 1002 290 262 0 16 chr6 54779473 54779535 -94737502 - B1F SINE Alu -65 84 24 5 1002 566 254 65 69 chr6 54779762 54779978 -94737059 - B3 SINE B2 -1 215 1 5 1002 21 57 0 0 chr6 54780399 54780434 -94736603 + AT_rich Low_complexity Low_complexity 1 35 0 5 1002 440 260 15 52 chr6 54780434 54780568 -94736469 + RSINE1 SINE B4 2 130 -35 5 1002 392 148 10 146 chr6 54780552 54780655 -94736382 + ORR1B1 LTR MaLR 296 384 -10 5 1002 213 292 29 58 chr6 54780838 54780907 -94736130 - ID4 SINE ID -2 81 15 5 1002 228 297 64 32 chr6 54781519 54781613 -94735424 - MER21B LTR ERV1 -559 304 208 5 1002 347 0 23 0 chr6 54781722 54781765 -94735272 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 1002 21 36 0 0 chr6 54782344 54782372 -94734665 + AT_rich Low_complexity Low_complexity 1 28 0 5 1002 372 216 61 35 chr6 54782425 54782540 -94734497 - B1_Mur2 SINE Alu -5 144 27 5 1002 1542 27 22 0 chr6 54782802 54782987 -94734050 + B2_Mm1a SINE B2 1 189 -4 5 1002 259 328 95 56 chr6 54783020 54783146 -94733891 + B3A SINE B2 38 168 -30 5 1002 858 275 89 37 chr6 54783478 54783803 -94733234 - MLT1D LTR MaLR -1 504 163 5 1002 7156 53 16 10 chr6 54784394 54785353 -94731684 - L1_Mus2 LINE L1 0 6566 5603 5 1002 1199 221 33 11 chr6 54785762 54786032 -94731005 - ORR1D1 LTR MaLR -95 279 4 5 1002 311 247 52 0 chr6 54786106 54786183 -94730854 + MER5A DNA MER1_type 53 133 -56 5 1002 236 279 0 37 chr6 54787089 54787171 -94729866 + ID4 SINE ID 2 80 -3 5 1002 837 190 35 5 chr6 54787295 54787474 -94729563 + B3 SINE B2 6 198 0 5 1002 1121 58 0 0 chr6 54787492 54787629 -94729408 + B1_Mm SINE Alu 1 137 -10 5 1002 412 32 32 0 chr6 54787629 54787691 -94729346 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 5 1002 25 83 0 0 chr6 54787709 54787769 -94729268 + AT_rich Low_complexity Low_complexity 1 60 0 5 1003 1181 267 82 18 chr6 54788403 54788770 -94728267 - MTD LTR MaLR -20 401 4 5 1003 413 243 14 19 chr6 54788837 54788944 -94728093 - PB1D10 SINE Alu -6 111 4 5 1003 323 224 164 43 chr6 54788980 54789120 -94727917 - L1M5 LINE L1 -804 5342 5186 5 1003 345 309 106 29 chr6 54789560 54789730 -94727307 + MER5A DNA MER1_type 1 183 -6 5 1003 812 149 34 54 chr6 54789829 54789978 -94727059 - B1_Mus2 SINE Alu 0 147 2 5 1003 689 152 79 16 chr6 54790445 54790572 -94726465 - B1_Mus1 SINE Alu -13 135 1 5 1003 25 0 0 0 chr6 54790884 54790909 -94726128 + AT_rich Low_complexity Low_complexity 1 25 0 5 1003 25 0 0 0 chr6 54790978 54791003 -94726034 + AT_rich Low_complexity Low_complexity 1 25 0 5 1003 834 125 29 0 chr6 54793128 54793264 -94723773 - B1_Mus1 SINE Alu 0 148 9 5 1003 671 201 90 8 chr6 54795721 54795900 -94721137 + B3 SINE B2 2 185 -10 5 1003 304 270 236 0 chr6 54796443 54796591 -94720446 - Cheshire DNA MER1_type -2190 230 48 5 1003 1129 61 0 26 chr6 54797468 54797619 -94719418 + B1_Mus2 SINE Alu 1 147 0 5 1003 270 0 0 0 chr6 54799228 54799258 -94717779 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1003 487 51 39 0 chr6 54799259 54799337 -94717700 + (CAGAGA)n Simple_repeat Simple_repeat 2 82 0 5 1003 231 186 0 0 chr6 54799671 54799714 -94717323 + G-rich Low_complexity Low_complexity 1 43 0 5 1003 2413 180 56 37 chr6 54801131 54801725 -94715312 - RLTR19-int LTR ERVK -3141 2996 2392 5 1003 1730 173 72 44 chr6 54803301 54803731 -94713306 + RMER10A LTR ERVL 1 442 0 5 1003 302 54 0 0 chr6 54803733 54803770 -94713267 - tRNA-Phe-TTY tRNA tRNA 0 76 40 5 1003 1090 95 0 0 chr6 54804023 54804170 -94712867 - B1_Mus2 SINE Alu 0 147 1 5 1003 1337 94 0 10 chr6 54804428 54804622 -94712415 - B2_Mm2 SINE B2 -2 193 2 5 1003 1696 142 103 18 chr6 54804719 54805048 -94711989 - RMER10B LTR ERVL -14 384 28 5 1003 567 235 86 45 chr6 54805351 54805695 -94711342 - RMER17C LTR ERVK 0 410 2 5 1003 433 280 27 47 chr6 54806281 54806431 -94710606 - RSINE1 SINE B4 -16 149 3 5 1003 230 273 102 0 chr6 54806713 54806801 -94710236 - L1MC4 LINE L1 -541 7501 7405 5 1003 192 40 0 0 chr6 54806964 54806989 -94710048 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1003 23 0 0 0 chr6 54807083 54807106 -94709931 + AT_rich Low_complexity Low_complexity 1 23 0 5 1003 8719 87 42 15 chr6 54807675 54807951 -94709086 - L1VL2 LINE L1 -632 3282 3004 5 1003 191 61 0 29 chr6 54807951 54807985 -94709052 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 5 1003 8719 105 64 37 chr6 54807985 54809173 -94707864 - L1VL2 LINE L1 -911 3003 1784 5 1003 1094 44 0 0 chr6 54809173 54809309 -94707728 - B1_Mus1 SINE Alu 0 148 13 5 1003 8719 105 64 37 chr6 54809309 54810475 -94706562 - L1VL2 LINE L1 -911 1783 584 5 1003 875 161 28 14 chr6 54810508 54810653 -94706384 - B1_Mur2 SINE Alu -1 148 2 5 1003 1116 211 190 32 chr6 54810752 54811099 -94705938 - MTD LTR MaLR 0 419 18 5 1003 1688 193 40 20 chr6 54812936 54813290 -94703747 - ORR1D1 LTR MaLR -8 366 6 5 1003 1149 23 0 0 chr6 54813557 54813689 -94703348 + B1_Mus2 SINE Alu 3 134 -13 5 1003 428 202 243 17 chr6 54814156 54814337 -94702700 - Charlie1b DNA MER1_type -204 319 98 5 1003 303 209 0 43 chr6 54814355 54814425 -94702612 + B1_Mus2 SINE Alu 49 115 -32 5 1003 740 217 72 67 chr6 54814550 54814743 -94702294 + B3 SINE B2 17 210 -6 5 1003 32 43 0 0 chr6 54815180 54815226 -94701811 + AT_rich Low_complexity Low_complexity 1 46 0 5 1003 870 183 14 0 chr6 54815226 54815368 -94701669 - B1_Mur4 SINE Alu -6 144 1 5 1003 488 45 15 0 chr6 54816498 54816565 -94700472 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1003 341 235 94 0 chr6 54817785 54817870 -94699167 - PB1D7 SINE Alu -7 113 21 5 1003 1154 73 0 12 chr6 54817881 54818048 -94698989 + (TTCC)n Simple_repeat Simple_repeat 4 168 0 5 1003 1053 82 0 0 chr6 54818232 54818367 -94698670 + B1_Mus1 SINE Alu 1 135 -13 5 1003 482 277 7 49 chr6 54818995 54819139 -94697898 + MTD LTR MaLR 8 145 -274 5 1003 791 205 43 43 chr6 54819140 54819349 -94697688 + B3 SINE B2 2 210 -6 5 1003 417 248 190 32 chr6 54819353 54819547 -94697490 + MTD LTR MaLR 195 408 -13 5 1003 301 239 63 127 chr6 54819591 54819749 -94697288 - B1_Mur1 SINE Alu -1 148 1 5 1003 208 271 0 17 chr6 54819962 54820022 -94697015 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 5 1003 421 256 13 26 chr6 54820064 54820208 -94696829 - B4A SINE B4 -88 204 10 5 1003 378 210 109 10 chr6 54820288 54820389 -94696648 - ID_B1 SINE B4 -6 218 108 5 1003 189 0 0 0 chr6 54821460 54821481 -94695556 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1003 423 0 0 0 chr6 54822022 54822069 -94694968 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1003 585 233 55 30 chr6 54823117 54823281 -94693756 + B3A SINE B2 1 168 -30 5 1003 205 372 35 39 chr6 54823440 54823607 -94693430 + MIRb SINE MIR 50 217 -51 5 1003 524 156 7 50 chr6 54824065 54824178 -94692859 - B1F2 SINE Alu -30 119 6 5 1003 240 267 0 140 chr6 54824093 54824193 -94692844 - MT2B LTR ERVL -361 240 155 5 1003 26 82 0 0 chr6 54825006 54825067 -94691970 + AT_rich Low_complexity Low_complexity 1 61 0 5 1003 47 44 0 0 chr6 54825111 54825179 -94691858 + AT_rich Low_complexity Low_complexity 1 68 0 5 1003 3558 15 2 0 chr6 54825262 54825657 -94691380 + MTA_Mm LTR MaLR 1 396 0 5 1003 338 284 0 11 chr6 54825908 54825997 -94691040 - PB1D10 SINE Alu -5 112 25 5 1003 308 195 73 61 chr6 54825989 54826071 -94690966 + Kanga1c DNA Tc2 625 707 -22 5 1003 3471 86 18 2 chr6 54826084 54826574 -94690463 + L1_Mus3 LINE L1 6139 6636 -2 5 1003 225 184 0 0 chr6 54827190 54827239 -94689798 + T-rich Low_complexity Low_complexity 1 49 0 5 1003 1214 48 0 0 chr6 54827239 54827386 -94689651 - B1_Mm SINE Alu 0 147 1 5 1003 606 208 46 8 chr6 54827464 54827515 -94689522 + B1_Mur1 SINE Alu 1 52 -97 5 1003 183 42 0 0 chr6 54827515 54827539 -94689498 + (G)n Simple_repeat Simple_repeat 1 24 0 5 1003 606 208 46 8 chr6 54827539 54827618 -94689419 + B1_Mur1 SINE Alu 53 136 -13 5 1003 219 36 0 0 chr6 54827618 54827646 -94689391 + (CATA)n Simple_repeat Simple_repeat 1 28 0 5 1003 504 225 100 8 chr6 54828865 54828995 -94688042 + B1_Mur1 SINE Alu 1 142 -7 5 1003 386 270 100 94 chr6 54829032 54829212 -94687825 + B3A SINE B2 2 182 -16 5 1003 25 31 0 0 chr6 54829231 54829263 -94687774 + AT_rich Low_complexity Low_complexity 1 32 0 5 1003 235 314 84 42 chr6 54829736 54829879 -94687158 - B1_Mur1 SINE Alu 0 149 1 5 1003 210 253 87 54 chr6 54829889 54829981 -94687056 - B4A SINE B4 -195 97 3 5 1003 315 252 56 35 chr6 54830055 54830199 -94686838 + L1M5 LINE L1 4533 4679 -1467 5 1003 229 345 133 38 chr6 54830310 54830521 -94686516 + MIRb SINE MIR 29 259 -9 5 1003 811 154 25 48 chr6 54830658 54830865 -94686172 + Lx3B LINE L1 6723 6970 -3 5 1003 26 0 0 0 chr6 54830867 54830893 -94686144 + AT_rich Low_complexity Low_complexity 1 26 0 5 1003 460 294 13 151 chr6 54831095 54831277 -94685760 + B3A SINE B2 25 198 0 5 1003 238 295 105 18 chr6 54831704 54831818 -94685219 + Tigger9a DNA Tigger 589 712 -20 5 1003 392 340 18 36 chr6 54831819 54831929 -94685108 + PB1D10 SINE Alu 2 109 -8 6 1003 651 112 0 0 chr6 54831945 54832043 -94684994 + (TAGG)n Simple_repeat Simple_repeat 2 99 0 6 1003 222 118 0 0 chr6 54832043 54832077 -94684960 + (CATG)n Simple_repeat Simple_repeat 2 35 0 6 1003 434 208 27 98 chr6 54832175 54832287 -94684750 + RSINE1 SINE B4 11 114 -51 6 1003 21 36 0 0 chr6 54832309 54832337 -94684700 + AT_rich Low_complexity Low_complexity 1 28 0 6 1003 328 289 0 22 chr6 54832695 54832787 -94684250 - PB1D10 SINE Alu -2 115 26 6 1003 308 248 110 22 chr6 54833619 54833755 -94683282 + MER3 DNA MER1_type 16 163 -46 6 1003 1035 271 28 28 chr6 54833799 54834084 -94682953 + B4 SINE B4 2 286 -6 6 1003 359 132 0 14 chr6 54834101 54834155 -94682882 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1003 255 31 0 0 chr6 54834155 54834187 -94682850 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1003 359 132 0 14 chr6 54834187 54834201 -94682836 + (CA)n Simple_repeat Simple_repeat 2 15 0 6 1003 210 71 0 0 chr6 54834924 54834952 -94682085 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1003 22 0 0 0 chr6 54834986 54835008 -94682029 + AT_rich Low_complexity Low_complexity 1 22 0 6 1003 182 308 123 19 chr6 54835859 54835965 -94681072 - MIRc SINE MIR -106 162 46 6 1003 2177 161 36 13 chr6 54836413 54836798 -94680239 + MTC LTR MaLR 16 409 -12 6 1003 263 205 229 0 chr6 54836826 54836909 -94680128 + RSINE1 SINE B4 40 141 -24 6 1003 228 282 12 71 chr6 54837315 54837399 -94679638 - ID4_ SINE ID -2 81 3 6 1003 266 143 14 54 chr6 54838759 54838833 -94678204 + T-rich Low_complexity Low_complexity 2 72 0 6 1003 23 54 0 0 chr6 54839587 54839624 -94677413 + AT_rich Low_complexity Low_complexity 1 37 0 6 1003 214 147 0 0 chr6 54839860 54839894 -94677143 + (CGCTG)n Simple_repeat Simple_repeat 1 34 0 6 1003 409 228 12 106 chr6 54841601 54841714 -94675323 + B1F SINE Alu 3 113 -36 6 1003 246 81 0 0 chr6 54842636 54842673 -94674364 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1003 454 240 30 42 chr6 54842968 54843106 -94673931 + B1F SINE Alu 1 140 -9 6 1003 1652 26 0 5 chr6 54844609 54844802 -94672235 + B2_Mm1a SINE B2 2 193 0 6 1003 335 273 148 0 chr6 54846072 54846160 -94670877 + B1_Mus2 SINE Alu 2 102 -45 6 1003 180 0 0 0 chr6 54846173 54846193 -94670844 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 6 1003 189 0 0 0 chr6 54847023 54847044 -94669993 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1003 428 259 73 7 chr6 54847249 54847385 -94669652 + ID_B1 SINE B4 68 212 -12 6 1003 216 0 0 0 chr6 54847385 54847409 -94669628 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 6 1003 260 322 127 0 chr6 54847562 54847680 -94669357 + B1F1 SINE Alu 5 137 -12 6 1003 274 175 99 12 chr6 54847962 54848043 -94668994 - L1ME2 LINE L1 -110 6069 5982 6 1003 576 258 185 24 chr6 54848110 54848408 -94668629 - L1ME2 LINE L1 -283 5881 5536 6 1003 385 289 44 0 chr6 54848419 54848533 -94668504 + ID_B1 SINE B4 94 212 -12 6 1003 341 281 139 28 chr6 54848636 54848852 -94668185 - L1MB8 LINE L1 -324 5854 5615 6 1003 3141 128 39 28 chr6 54849263 54849833 -94667204 + RLTR20B3 LTR ERVK 1 576 -1 6 1003 1868 123 99 9 chr6 54849842 54850186 -94666851 - RLTR14 LTR ERV1 0 382 8 6 1003 271 289 35 17 chr6 54850393 54850509 -94666528 - L1MB8 LINE L1 -1123 5023 4906 6 1003 1559 58 16 0 chr6 54850527 54850717 -94666320 - B2_Mm1a SINE B2 0 193 1 6 1003 481 239 51 77 chr6 54851621 54851816 -94665221 + B4 SINE B4 103 292 0 6 1003 1639 183 106 3 chr6 54851824 54852153 -94664884 - MTD LTR MaLR -56 363 1 6 1003 235 314 36 42 chr6 54852189 54852382 -94664655 - L1ME4a LINE L1 -4 6120 5929 6 1003 618 255 50 0 chr6 54853470 54853631 -94663406 - MTE2a LTR MaLR -3 376 208 6 1003 210 226 44 67 chr6 54853631 54853721 -94663316 - B4A SINE B4 -163 129 42 6 1003 1107 84 126 0 chr6 54853881 54854048 -94662989 - B2_Mm2 SINE B2 -7 188 1 6 1003 339 305 48 0 chr6 54854071 54854176 -94662861 + PB1D10 SINE Alu 8 117 0 6 1003 257 218 37 49 chr6 54854453 54854535 -94662502 - MLT1G3 LTR MaLR -216 379 299 6 1003 1348 229 58 23 chr6 54854546 54854894 -94662143 + MTE2a LTR MaLR 20 379 0 6 1003 539 290 91 20 chr6 54854912 54855165 -94661872 - MLT1G3 LTR MaLR -307 288 18 6 1003 330 255 0 29 chr6 54855965 54856070 -94660967 - MLT1H LTR MaLR -4 545 444 6 1003 249 253 46 46 chr6 54856554 54856641 -94660396 - PB1D10 SINE Alu -15 102 16 6 1003 402 294 61 81 chr6 54856932 54857080 -94659957 + ID_B1 SINE B4 78 222 -2 6 1003 989 157 5 61 chr6 54857452 54857649 -94659388 - MTC LTR MaLR 0 421 236 6 1003 547 186 20 0 chr6 54857651 54857753 -94659284 - MTC LTR MaLR -317 104 1 6 1003 22103 173 70 44 chr6 54857785 54860881 -94656156 - Lx7 LINE L1 0 7696 4367 6 1003 657 0 0 0 chr6 54860881 54860954 -94656083 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 6 1003 22103 145 72 52 chr6 54860954 54863229 -94653808 - Lx7 LINE L1 -1514 4366 2162 6 1003 3456 49 65 0 chr6 54863229 54863659 -94653378 - L1_Mus1 LINE L1 -1 6566 6109 6 1003 22103 167 87 39 chr6 54863659 54865243 -94651794 - Lx7 LINE L1 -3719 2161 428 6 1003 296 300 100 0 chr6 54866027 54866117 -94650920 + PB1D10 SINE Alu 2 100 -17 6 1003 3165 70 5 8 chr6 54866555 54866956 -94650081 - MTB LTR MaLR 0 400 1 6 1003 426 222 90 67 chr6 54867205 54867407 -94649630 - MIR SINE MIR -7 261 50 6 1003 296 299 98 51 chr6 54867552 54867819 -94649218 + B4 SINE B4 13 288 -4 6 1003 252 0 0 0 chr6 54868287 54868315 -94648722 + (TTAG)n Simple_repeat Simple_repeat 3 30 0 6 1003 1254 41 0 0 chr6 54869086 54869232 -94647805 - B1_Mm SINE Alu -1 146 1 6 1003 180 0 0 0 chr6 54869333 54869353 -94647684 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 6 1003 527 198 93 9 chr6 54869440 54869547 -94647490 + B1_Mur1 SINE Alu 7 122 -27 6 1003 437 302 108 0 chr6 54869598 54869737 -94647300 + RSINE1 SINE B4 3 156 -9 6 1003 1602 43 0 0 chr6 54869770 54869957 -94647080 - B2_Mm1a SINE B2 -6 187 1 6 1003 272 279 100 89 chr6 54870141 54870432 -94646605 + ORR1E LTR MaLR 61 354 -5 6 1003 225 291 49 25 chr6 54870979 54871060 -94645977 - ORR1D1 LTR MaLR -7 367 285 6 1003 185 311 65 19 chr6 54871790 54871898 -94645139 - MIRb SINE MIR -34 234 122 6 1003 681 268 84 105 chr6 54871990 54872286 -94644751 + B4 SINE B4 3 292 0 6 1003 412 258 0 93 chr6 54872347 54872454 -94644583 + RSINE1 SINE B4 43 139 -26 6 1003 693 157 0 0 chr6 54872466 54872619 -94644418 + GA-rich Low_complexity Low_complexity 1 153 0 6 1003 475 191 14 1 chr6 54872860 54872956 -94644081 - PB1D10 SINE Alu -13 107 10 6 1003 1477 72 0 10 chr6 54875363 54875558 -94641479 - B2_Mm2 SINE B2 -1 194 2 6 1003 1182 230 76 79 chr6 54876129 54876445 -94640592 - MTEa LTR MaLR -7 372 58 6 1003 239 223 0 42 chr6 54876462 54876522 -94640515 - PB1D9 SINE Alu -97 52 1 6 1003 3290 52 12 12 chr6 54876657 54877062 -94639975 + MTB_Mm LTR MaLR 3 407 0 6 1003 380 20 0 20 chr6 54878328 54878378 -94638659 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1003 441 0 0 0 chr6 54878378 54878426 -94638611 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1003 426 127 0 0 chr6 54879109 54879180 -94637857 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1003 1466 59 27 0 chr6 54879319 54879506 -94637531 + B2_Mm1a SINE B2 2 193 0 6 1003 684 279 184 23 chr6 54879546 54880026 -94637011 + L1MB7 LINE L1 5476 6025 -334 6 1003 239 86 237 17 chr6 54880997 54881056 -94635981 + PB1D10 SINE Alu 12 83 -66 6 1003 2165 98 3 0 chr6 54881486 54881804 -94635233 - ORR1A2 LTR MaLR -8 319 1 6 1003 310 325 0 17 chr6 54882395 54882511 -94634526 - PB1D10 SINE Alu -2 115 2 6 1003 1236 227 28 85 chr6 54882538 54882938 -94634099 + MTEa LTR MaLR 2 378 -1 6 1003 310 168 19 47 chr6 54883201 54883307 -94633730 + G-rich Low_complexity Low_complexity 5 107 0 6 1003 965 245 80 46 chr6 54885074 54885435 -94631602 + MTD LTR MaLR 44 394 -25 6 1003 297 301 26 40 chr6 54885443 54885595 -94631442 + MIRb SINE MIR 82 231 -37 6 1003 333 0 0 0 chr6 54885953 54885990 -94631047 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1003 459 222 58 58 chr6 54886179 54886351 -94630686 + L1M3 LINE L1 5430 5601 -582 6 1003 591 245 73 0 chr6 54886384 54886535 -94630502 + B3 SINE B2 50 211 -5 6 1003 23 0 0 0 chr6 54886536 54886559 -94630478 + AT_rich Low_complexity Low_complexity 1 23 0 6 1003 25 0 0 0 chr6 54887029 54887054 -94629983 + AT_rich Low_complexity Low_complexity 1 25 0 6 1003 275 193 76 0 chr6 54889120 54889137 -94627900 + B4A SINE B4 69 117 -175 6 1003 293 118 20 0 chr6 54889137 54889188 -94627849 + PB1D10 SINE Alu 9 60 -57 6 1003 275 193 76 0 chr6 54889188 54889202 -94627835 + B4A SINE B4 118 164 -128 6 1003 1511 186 70 39 chr6 54890512 54890897 -94626140 + RMER10A LTR ERVL 3 399 -43 6 1003 2946 144 23 15 chr6 54890897 54891417 -94625620 - RLTR28 LTR ERVL 0 524 1 6 1003 427 331 105 39 chr6 54891533 54891791 -94625246 + MLT1J LTR MaLR 235 509 -3 6 1003 261 244 48 12 chr6 54892345 54892428 -94624609 + MIRm SINE MIR 66 151 -125 6 1003 2466 158 41 47 chr6 54892472 54892938 -94624099 - RMER4A LTR ERVK 0 466 4 6 1003 483 255 18 9 chr6 54895836 54895947 -94621090 + PB1D10 SINE Alu 5 116 -1 6 1003 269 320 58 30 chr6 54896017 54896268 -94620769 - L1MB5 LINE L1 -5 6173 5903 6 1003 423 0 0 0 chr6 54896369 54896416 -94620621 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1003 252 307 81 83 chr6 54897142 54897286 -94619751 + L2b LINE L2 3254 3425 -1 7 1003 284 291 80 0 chr6 54897376 54897472 -94619565 - ID4_ SINE ID -46 106 3 7 1003 327 244 0 35 chr6 54897616 54897701 -94619336 + ID4 SINE ID 2 83 0 7 1003 473 255 18 28 chr6 54898562 54898671 -94618366 + PB1D10 SINE Alu 10 117 0 7 1003 4757 69 24 2 chr6 54899863 54900455 -94616582 + RLTR1D LTR ERV1 1 605 0 7 1003 2580 187 37 4 chr6 54900485 54900995 -94616042 - RLTR11A2 LTR ERVK 0 527 1 7 1003 288 258 196 43 chr6 54901045 54901183 -94615854 - MTEa LTR MaLR -19 360 202 7 1003 904 315 75 118 chr6 54901401 54902045 -94614992 + RLTR18 LTR ERVK 1 616 0 7 1003 21 36 0 0 chr6 54902060 54902088 -94614949 + AT_rich Low_complexity Low_complexity 1 28 0 7 1003 1253 90 26 31 chr6 54902283 54902477 -94614560 + B2_Mm2 SINE B2 1 193 -2 7 1003 224 263 77 26 chr6 54902528 54902606 -94614431 - B1F1 SINE Alu 0 149 68 7 1003 351 262 96 10 chr6 54902621 54902725 -94614312 + B4A SINE B4 1 113 -179 7 1003 2012 171 25 8 chr6 54902735 54903094 -94613943 + Lx9 LINE L1 6679 7043 -601 7 1003 4407 156 85 24 chr6 54903102 54903952 -94613085 + RLTR13D6 LTR ERVK 1 902 0 7 1003 1447 211 201 0 chr6 54903955 54904318 -94612719 + Lx9 LINE L1 7049 7484 -160 7 1003 417 86 0 0 chr6 54904324 54904382 -94612655 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1003 315 250 50 0 chr6 54904392 54904472 -94612565 - RLTR11A2 LTR ERVK -185 342 259 7 1003 399 212 8 34 chr6 54904481 54904598 -94612439 + Lx9 LINE L1 7524 7637 -7 7 1003 224 318 28 0 chr6 54905366 54905473 -94611564 + G-rich Low_complexity Low_complexity 5 114 0 7 1003 247 246 0 42 chr6 54905419 54905491 -94611546 + GA-rich Low_complexity Low_complexity 6 74 0 7 1003 630 26 0 71 chr6 54906892 54907018 -94610019 + (TG)n Simple_repeat Simple_repeat 2 118 0 7 1003 1168 247 60 28 chr6 54907022 54907339 -94609698 + MER2 DNA MER2_type 16 342 -3 7 1003 387 0 0 0 chr6 54907351 54907394 -94609643 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1003 388 265 25 33 chr6 54907463 54907584 -94609453 - PB1D9 SINE Alu 0 120 1 7 1003 432 0 0 0 chr6 54908448 54908496 -94608541 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 7 1003 695 206 0 15 chr6 54908497 54908630 -94608407 - B1_Mus1 SINE Alu -17 131 1 7 1003 545 200 204 33 chr6 54908643 54908824 -94608213 - B3 SINE B2 -3 213 2 7 1003 297 0 0 0 chr6 54908966 54908999 -94608038 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 1003 1191 22 14 0 chr6 54908999 54909137 -94607900 - B1_Mus1 SINE Alu -8 140 1 7 1003 4563 74 7 2 chr6 54909349 54909930 -94607107 + MT2B2 LTR ERVL 1 584 0 7 1003 617 252 111 84 chr6 54910142 54910367 -94606670 - B4 SINE B4 -57 235 5 7 1003 405 285 60 46 chr6 54910620 54910771 -94606266 + RMER15 LTR ERVL 369 521 -54 7 1003 335 281 0 0 chr6 54911014 54911096 -94605941 + PB1D10 SINE Alu 14 95 -22 7 1003 207 0 0 0 chr6 54911096 54911119 -94605918 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1003 342 0 0 0 chr6 54911227 54911265 -94605772 + (TTTC)n Simple_repeat Simple_repeat 4 41 0 7 1003 207 156 0 0 chr6 54912011 54912043 -94604994 + CT-rich Low_complexity Low_complexity 1 32 0 7 1003 302 231 218 0 chr6 54912778 54912856 -94604181 + PB1D10 SINE Alu 1 95 -22 7 1003 465 66 0 0 chr6 54912871 54912932 -94604105 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 7 1003 2110 74 100 7 chr6 54913012 54913313 -94603724 + ORR1A4 LTR MaLR 1 329 0 7 1003 558 257 9 0 chr6 54913533 54913638 -94603399 + RSINE1 SINE B4 14 119 -46 7 1003 689 274 39 90 chr6 54913752 54914109 -94602928 + RLTR23 LTR ERV1 92 430 0 7 1003 684 83 0 0 chr6 54914166 54914262 -94602775 + (GGGAGA)n Simple_repeat Simple_repeat 1 96 0 7 1003 264 295 13 0 chr6 54914839 54914917 -94602120 + ID4_ SINE ID 5 83 0 7 1003 270 333 37 28 chr6 54915507 54915615 -94601422 + MLT1A LTR MaLR 1 109 -256 7 1003 349 242 23 31 chr6 54915869 54915974 -94601063 + MTEa LTR MaLR 269 365 -14 7 1003 417 333 81 39 chr6 54916530 54916789 -94600248 + MLT1A LTR MaLR 77 346 -28 7 1003 294 296 22 43 chr6 54916853 54916945 -94600092 - PB1D10 SINE Alu -27 90 1 7 1003 342 244 26 0 chr6 54916980 54917058 -94599979 - ID4_ SINE ID -3 80 1 7 1003 201 310 113 0 chr6 54917826 54917938 -94599099 + MIRc SINE MIR 16 148 -120 7 1003 788 193 7 0 chr6 54918519 54918664 -94598373 + B1_Mur1 SINE Alu 2 147 -2 7 1003 282 29 0 0 chr6 54918866 54918901 -94598136 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1003 1159 44 0 0 chr6 54918901 54919036 -94598001 - B1_Mm SINE Alu -11 136 2 7 1004 252 310 0 14 chr6 54919308 54919452 -94597585 + (TA)n Simple_repeat Simple_repeat 2 143 0 7 1004 264 282 14 27 chr6 54919539 54919612 -94597425 + ID4 SINE ID 2 73 -10 7 1004 1256 34 0 0 chr6 54920824 54920971 -94596066 + B1_Mus2 SINE Alu 1 147 0 7 1004 204 40 0 0 chr6 54920971 54920996 -94596041 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1004 262 310 49 47 chr6 54921115 54921290 -94595747 - MIRb SINE MIR -8 200 29 7 1004 244 286 95 42 chr6 54921933 54922028 -94595009 - MER5B DNA MER1_type -4 174 75 7 1004 569 275 130 120 chr6 54923245 54923575 -94593462 - L1MD1 LINE L1 -8 6625 6278 7 1004 479 322 58 19 chr6 54923575 54923730 -94593307 - RSINE1 SINE B4 -2 163 3 7 1004 569 275 130 120 chr6 54923730 54923907 -94593130 - L1MD1 LINE L1 -356 6277 6113 7 1004 419 272 278 55 chr6 54923932 54924266 -94592771 - L1MD1 LINE L1 -781 5969 5567 7 1004 795 21 0 0 chr6 54924266 54924359 -94592678 + (TCTCCC)n Simple_repeat Simple_repeat 4 96 0 7 1004 320 263 253 18 chr6 54924359 54924529 -94592508 - ID_B1 SINE B4 -14 210 1 7 1004 246 258 80 46 chr6 54924529 54924635 -94592402 - L1MD1 LINE L1 -971 5566 5451 7 1004 3711 198 55 42 chr6 54925092 54926360 -94590677 + RMER1B Other Other 15 1061 -5 7 1004 317 226 16 0 chr6 54926416 54926478 -94590559 - PB1D10 SINE Alu -1 116 54 7 1004 322 306 103 15 chr6 54926571 54926707 -94590330 - L1MD1 LINE L1 -1222 5315 5168 7 1004 399 323 98 119 chr6 54928658 54929087 -94587950 - L1MD1 LINE L1 -1320 5217 4798 7 1004 300 386 0 0 chr6 54929112 54929226 -94587811 - PB1D10 SINE Alu -3 114 1 7 1004 570 279 72 12 chr6 54929263 54929581 -94587456 + L1MB5 LINE L1 5529 5866 -308 7 1004 306 225 236 6 chr6 54929629 54929790 -94587247 + L1MB5 LINE L1 5947 6144 -30 7 1004 379 287 21 11 chr6 54929835 54929871 -94587166 - B3 SINE B2 -1 215 180 7 1004 498 108 0 0 chr6 54929871 54929945 -94587092 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 1004 379 287 21 11 chr6 54929945 54930003 -94587034 - B3 SINE B2 -37 179 120 7 1004 972 49 8 0 chr6 54930103 54930225 -94586812 - B1_Mm SINE Alu 0 147 25 7 1004 405 95 0 0 chr6 54930280 54930343 -94586694 + (T)n Simple_repeat Simple_repeat 1 63 0 7 1004 2069 128 137 0 chr6 54930344 54930680 -94586357 - RLTR41 LTR ERV1 -64 382 1 7 1004 301 283 0 54 chr6 54930789 54930901 -94586136 - L1MD1 LINE L1 -1763 4774 4669 7 1004 615 176 34 0 chr6 54931051 54931170 -94585867 - RSINE1 SINE B4 -40 125 3 7 1004 236 244 161 25 chr6 54931254 54931372 -94585665 - L1MD1 LINE L1 -2077 4460 4327 7 1004 348 337 40 40 chr6 54931410 54931663 -94585374 - L1MD1 LINE L1 -2295 4242 3990 7 1004 490 276 109 0 chr6 54931657 54931849 -94585188 - L1MD1 LINE L1 -3772 2765 2553 7 1004 676 283 40 1 chr6 54931870 54932068 -94584969 - B3 SINE B2 -5 211 1 7 1004 248 329 27 0 chr6 54932137 54932210 -94584827 - PB1D10 SINE Alu -21 96 22 7 1004 270 0 0 0 chr6 54932211 54932241 -94584796 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1004 327 273 248 26 chr6 54932391 54932847 -94584190 - L1MD1 LINE L1 -4431 2202 1646 7 1004 265 311 78 13 chr6 54932978 54933131 -94583906 - L1MD1 LINE L1 -5200 1433 1271 7 1004 577 263 87 23 chr6 54933369 54933587 -94583450 - L1MD1 LINE L1 -5435 1198 967 7 1004 782 300 72 44 chr6 54933730 54934159 -94582878 - L1MD1 LINE L1 -6178 455 15 7 1004 259 268 121 20 chr6 54934201 54934300 -94582737 - PB1D10 SINE Alu -7 110 2 7 1004 660 292 92 22 chr6 54934312 54934585 -94582452 - B4 SINE B4 0 292 1 7 1004 342 272 38 28 chr6 54934922 54935028 -94582009 + PB1D10 SINE Alu 10 116 -1 7 1004 340 261 125 19 chr6 54935055 54935215 -94581822 - MIR SINE MIR -19 243 67 7 1004 322 242 86 56 chr6 54935219 54935337 -94581700 + PB1D10 SINE Alu 1 123 -25 7 1004 192 321 0 0 chr6 54937028 54937059 -94579978 + L2b LINE L2 1116 1146 -2273 7 1004 1462 39 78 0 chr6 54937059 54937077 -94579960 - B2_Mm1t SINE B2 0 193 176 7 1004 495 0 0 0 chr6 54937077 54937132 -94579905 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 7 1004 1462 39 78 0 chr6 54937132 54937292 -94579745 - B2_Mm1t SINE B2 -18 175 2 7 1004 192 321 0 0 chr6 54937292 54937313 -94579724 + L2b LINE L2 1147 1167 -2252 7 1004 754 221 0 0 chr6 54937392 54937523 -94579514 - B1_Mur1 SINE Alu -5 144 14 7 1004 2998 115 4 53 chr6 54937523 54937625 -94579412 + RLTR31_Mm LTR ERVK 1 102 -459 7 1004 1396 74 11 0 chr6 54937625 54937815 -94579222 + B2_Mm1a SINE B2 2 193 0 7 1004 2998 115 4 53 chr6 54937815 54938225 -94578812 + RLTR31_Mm LTR ERVK 103 488 -73 7 1004 1423 128 115 0 chr6 54938227 54938462 -94578575 + RLTR17 LTR ERVK 431 692 0 7 1004 449 320 124 19 chr6 54938523 54938781 -94578256 + MER2 DNA MER2_type 21 305 -40 7 1004 189 147 0 0 chr6 54939869 54939903 -94577134 + (TTTC)n Simple_repeat Simple_repeat 4 37 0 7 1004 213 337 0 46 chr6 54940176 54940263 -94576774 - MIRb SINE MIR -138 130 48 7 1004 275 312 0 24 chr6 54940300 54940382 -94576655 + MIR3 SINE MIR 83 162 -46 7 1004 347 302 197 36 chr6 54940941 54941584 -94575453 + L2b LINE L2 2412 3209 -178 7 1004 280 272 95 88 chr6 54941988 54942000 -94575037 + MLT1N2 LTR MaLR 418 428 -134 7 1004 531 0 0 0 chr6 54942000 54942059 -94574978 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1004 280 272 95 88 chr6 54942059 54942183 -94574854 + MLT1N2 LTR MaLR 429 555 -7 7 1004 235 278 27 27 chr6 54943204 54943278 -94573759 - PB1D7 SINE Alu -12 108 35 7 1004 250 290 44 53 chr6 54943499 54943612 -94573425 + L1MC5 LINE L1 6752 6863 -1179 7 1004 364 298 80 132 chr6 54943670 54943995 -94573042 + L1MC5 LINE L1 6861 7168 -793 7 1004 843 177 0 21 chr6 54944201 54944345 -94572692 + B1_Mur3 SINE Alu 1 141 -8 7 1004 210 71 0 0 chr6 54944345 54944373 -94572664 + (CAA)n Simple_repeat Simple_repeat 2 29 0 7 1004 399 235 191 0 chr6 54944575 54944711 -94572326 + RSINE1 SINE B4 2 163 -2 7 1004 225 0 0 0 chr6 54944711 54944736 -94572301 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1004 828 100 0 0 chr6 54944736 54944855 -94572182 + (CA)n Simple_repeat Simple_repeat 1 120 0 7 1004 1343 58 0 17 chr6 54945235 54945250 -94571787 - B2_Mm1a SINE B2 -20 173 161 7 1004 180 0 0 0 chr6 54945250 54945270 -94571767 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 7 1004 1343 58 0 17 chr6 54945270 54945430 -94571607 - B2_Mm1a SINE B2 -33 160 1 7 1004 296 18 52 35 chr6 54945438 54945496 -94571541 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 7 1004 1204 56 0 0 chr6 54945496 54945640 -94571397 - B1_Mm SINE Alu -3 144 1 8 1004 367 277 29 10 chr6 54945966 54946068 -94570969 - PB1D10 SINE Alu -5 112 9 8 1004 1151 69 0 14 chr6 54946099 54946246 -94570791 + B1_Mus2 SINE Alu 2 146 -1 8 1004 817 128 97 8 chr6 54948226 54948360 -94568677 - B1_Mus1 SINE Alu 0 148 3 8 1004 300 53 0 0 chr6 54948495 54948533 -94568504 + (TTG)n Simple_repeat Simple_repeat 2 39 0 8 1004 527 148 11 0 chr6 54948557 54948645 -94568392 - B1_Mus2 SINE Alu 0 147 59 8 1004 486 114 0 0 chr6 54948654 54948733 -94568304 + (TG)n Simple_repeat Simple_repeat 1 79 0 8 1004 661 218 75 0 chr6 54948748 54948881 -94568156 - B3A SINE B2 -55 143 1 8 1004 369 242 0 0 chr6 54949044 54949106 -94567931 - ID4 SINE ID -4 79 18 8 1004 303 286 0 0 chr6 54949051 54949114 -94567923 - tRNA-Ala-GCY_ tRNA tRNA -9 66 4 8 1004 547 259 51 22 chr6 54949600 54949738 -94567299 - B1F SINE Alu -6 143 2 8 1004 420 231 13 0 chr6 54949876 54949954 -94567083 + PB1D10 SINE Alu 13 91 -26 8 1004 580 156 88 151 chr6 54949986 54950145 -94566892 + B1_Mur4 SINE Alu 2 150 0 8 1004 816 223 53 24 chr6 54950195 54950402 -94566635 + B3 SINE B2 2 214 -2 8 1004 848 275 62 55 chr6 54950434 54950707 -94566330 + B4 SINE B4 17 291 -1 8 1004 1006 156 172 0 chr6 54951870 54952062 -94564975 - URR1B DNA MER1_type 0 225 1 8 1004 186 103 0 0 chr6 54952356 54952385 -94564652 + (TC)n Simple_repeat Simple_repeat 2 30 0 8 1004 262 309 37 12 chr6 54952744 54952826 -94564211 - ID_B1 SINE B4 -4 220 137 8 1004 243 61 0 0 chr6 54952942 54952975 -94564062 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1004 1166 101 196 0 chr6 54953072 54953251 -94563786 + B3 SINE B2 3 216 0 8 1004 1685 191 92 23 chr6 54953648 54954040 -94562997 + MTD LTR MaLR 1 419 0 8 1004 260 260 183 96 chr6 54954980 54955095 -94561942 + B1F SINE Alu 25 149 0 8 1004 814 299 148 14 chr6 54955154 54955639 -94561398 + L1MB5 LINE L1 5617 6166 -8 8 1004 1225 55 0 0 chr6 54957066 54957212 -94559825 + B1_Mus1 SINE Alu 3 148 0 8 1004 699 256 88 90 chr6 54957702 54958069 -94558968 - MTE2b LTR MaLR -18 341 8 8 1004 3889 150 111 87 chr6 54958106 54958987 -94558050 + RMER19B LTR ERVK 1 902 0 8 1004 698 0 12 0 chr6 54958990 54959072 -94557965 + (TA)n Simple_repeat Simple_repeat 1 83 0 8 1004 274 282 35 26 chr6 54959169 54959282 -94557755 + PB1D10 SINE Alu 4 117 0 8 1004 368 131 0 14 chr6 54959282 54959352 -94557685 + (GA)n Simple_repeat Simple_repeat 2 70 0 8 1004 240 135 27 13 chr6 54960241 54960316 -94556721 + (TGGG)n Simple_repeat Simple_repeat 3 78 0 8 1004 248 273 0 0 chr6 54960730 54960785 -94556252 - MLT1F1 LTR MaLR 0 560 506 8 1004 613 288 0 33 chr6 54960793 54960944 -94556093 + B3A SINE B2 3 148 -50 8 1004 324 0 0 0 chr6 54960945 54960981 -94556056 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1004 308 330 138 106 chr6 54961107 54961324 -94555713 - MLT1F1 LTR MaLR -196 352 129 8 1004 30 27 0 0 chr6 54961405 54961442 -94555595 + AT_rich Low_complexity Low_complexity 1 37 0 8 1004 546 294 7 7 chr6 54961442 54961589 -94555448 - MLT1F1 LTR MaLR -422 147 1 8 1004 248 230 104 39 chr6 54961855 54961932 -94555105 + PB1 SINE Alu 1 82 -67 8 1004 225 307 27 0 chr6 54963283 54963358 -94553679 + B1F SINE Alu 71 147 -2 8 1004 2162 150 85 5 chr6 54963906 54964295 -94552742 + MTC LTR MaLR 1 420 -1 8 1004 1803 192 35 35 chr6 54964654 54965026 -94552011 - ORR1D1 LTR MaLR 0 374 3 8 1004 308 250 29 0 chr6 54965085 54965153 -94551884 + B4A SINE B4 1 70 -222 8 1004 296 194 0 0 chr6 54965712 54965780 -94551257 - L1MB1 LINE L1 -190 5990 5923 8 1004 2415 162 19 10 chr6 54965780 54966197 -94550840 - MTC LTR MaLR 0 421 1 8 1004 512 271 73 27 chr6 54966198 54966418 -94550619 - L1MB2 LINE L1 -244 5927 5698 8 1004 339 170 5 89 chr6 54966846 54966943 -94550094 + PB1D10 SINE Alu 37 127 0 8 1004 285 262 0 0 chr6 54966985 54967046 -94549991 + ID4_ SINE ID 21 81 -2 8 1004 521 216 0 105 chr6 54968516 54968758 -94548279 + C-rich Low_complexity Low_complexity 1 216 0 8 1004 306 164 0 0 chr6 54968931 54968986 -94548051 + (CACCAT)n Simple_repeat Simple_repeat 6 60 0 8 1004 2174 64 29 36 chr6 54969715 54969861 -94547176 + ORR1A2 LTR MaLR 2 155 -172 8 1004 1497 58 21 0 chr6 54969861 54970049 -94546988 + B2_Mm2 SINE B2 1 192 -3 8 1004 2174 64 29 36 chr6 54970049 54970211 -94546826 + ORR1A2 LTR MaLR 156 308 -19 8 1004 2079 4 0 0 chr6 54970213 54970444 -94546593 - L1_Mm LINE L1 -3284 2599 2369 8 1004 2313 165 28 12 chr6 54970632 54971032 -94546005 + MTC LTR MaLR 5 410 -11 8 1004 441 0 0 0 chr6 54971444 54971493 -94545544 + (TGGA)n Simple_repeat Simple_repeat 2 50 0 8 1004 411 179 81 45 chr6 54971640 54971751 -94545286 + MLT1A1 LTR MaLR 291 405 -3 8 1004 3045 20 40 3 chr6 54972346 54972700 -94544337 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1004 26764 17 1 2 chr6 54972700 54975660 -94541377 - IAPEz-int LTR ERVK 0 6481 3525 8 1004 934 88 24 0 chr6 54975660 54975785 -94541252 - IAPEz-int LTR ERVK -2770 4910 4783 8 1004 1787 123 4 15 chr6 54975780 54976045 -94540992 - IAPEz-int LTR ERVK -5183 2497 2236 8 1004 460 66 0 32 chr6 54976034 54976097 -94540940 - IAPEz-int LTR ERVK -5062 1419 1359 8 1004 3283 89 14 16 chr6 54976097 54976802 -94540235 - IAPEz-int LTR ERVK -5819 662 35 8 1004 3045 20 40 3 chr6 54976812 54977166 -94539871 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1004 486 275 33 170 chr6 54977454 54977818 -94539219 - ORR1E LTR MaLR 0 359 46 8 1004 1416 148 28 53 chr6 54977898 54978219 -94538818 + RMER17C LTR ERVK 3 315 -95 8 1004 727 117 79 48 chr6 54978220 54978320 -94538717 + B2_Mm2 SINE B2 52 161 -34 8 1004 288 0 0 0 chr6 54978320 54978352 -94538685 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 8 1004 727 117 79 48 chr6 54978352 54978377 -94538660 + B2_Mm2 SINE B2 162 181 -14 8 1004 228 244 149 11 chr6 54978411 54978498 -94538539 + MTD LTR MaLR 320 418 -1 8 1004 1543 181 20 40 chr6 54978678 54978977 -94538060 + RLTR30 LTR ERV1 43 335 -44 8 1004 429 251 42 68 chr6 54979098 54979290 -94537747 - RMER10A LTR ERVL -10 432 246 8 1004 1132 140 198 16 chr6 54979446 54979664 -94537373 + RMER16 LTR ERVK 242 483 -50 8 1004 414 0 0 0 chr6 54979664 54979710 -94537327 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 8 1004 1132 140 198 16 chr6 54979710 54979738 -94537299 + RMER16 LTR ERVK 484 532 -1 8 1004 395 221 113 84 chr6 54979738 54979951 -94537086 - RMER10A LTR ERVL -199 243 25 8 1004 2801 114 64 113 chr6 54981409 54982020 -94535017 + RLTR13D1 LTR ERVK 252 806 0 8 1004 268 256 47 47 chr6 54982149 54982235 -94534802 + MTEa LTR MaLR 279 364 -15 8 1004 405 70 0 0 chr6 54982985 54983042 -94533995 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1004 355 311 22 29 chr6 54983860 54983923 -94533114 - Lx8 LINE L1 -1501 5972 5910 8 1004 333 0 0 0 chr6 54983923 54983960 -94533077 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1004 355 310 3 4 chr6 54983960 54984076 -94532961 - Lx8 LINE L1 -372 5928 5829 8 1004 2737 81 30 50 chr6 54984829 54985231 -94531806 + ORR1B1 LTR MaLR 1 394 0 8 1004 233 310 14 0 chr6 54985321 54985392 -94531645 - B4A SINE B4 -219 73 2 8 1004 21 0 0 0 chr6 54985821 54985842 -94531195 + AT_rich Low_complexity Low_complexity 1 21 0 8 1004 483 283 45 98 chr6 54985853 54986139 -94530898 - MER65-int LTR ERV1 -3145 1726 1456 8 1004 487 312 102 27 chr6 54986618 54986896 -94530141 - LTR31 LTR ERV1 -210 512 110 8 1004 620 223 0 0 chr6 54987509 54987621 -94529416 - PB1D10 SINE Alu -1 116 5 8 1004 201 243 0 13 chr6 54989399 54989474 -94527563 + T-rich Low_complexity Low_complexity 3 76 0 8 1004 463 275 140 48 chr6 54989816 54990087 -94526950 + Charlie1a DNA MER1_type 640 935 -520 8 1004 319 247 82 10 chr6 54990141 54990239 -94526798 - ID_B1 SINE B4 -12 212 108 8 1004 260 224 35 0 chr6 54990227 54990285 -94526752 - ID4_ SINE ID -9 74 15 8 1004 408 271 101 8 chr6 54990422 54990541 -94526496 - RSINE1 SINE B4 -33 132 3 8 1004 447 102 0 17 chr6 54990795 54990908 -94526129 - B2_Mm2 SINE B2 -2 193 47 8 1004 1370 69 40 0 chr6 54990921 54991094 -94525943 - B2_Mm2 SINE B2 -14 181 2 8 1004 618 267 56 47 chr6 54991182 54991456 -94525581 - Tigger5 DNA MER2_type -2139 267 74 8 1004 413 322 8 0 chr6 54991557 54991675 -94525362 + B4 SINE B4 1 119 -173 8 1004 597 132 96 9 chr6 54991939 54992054 -94524983 + B1_Mur3 SINE Alu 1 125 -24 8 1004 238 50 50 0 chr6 54992076 54992116 -94524921 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 8 1004 255 31 0 0 chr6 54992340 54992372 -94524665 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8 1004 1153 35 0 14 chr6 54992413 54992557 -94524480 + B1_Mus1 SINE Alu 6 147 -1 8 1004 399 56 0 0 chr6 54992624 54992678 -94524359 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1004 239 235 218 75 chr6 54992758 54992905 -94524132 + MIR SINE MIR 84 251 -11 8 1004 318 175 0 0 chr6 54993476 54993556 -94523481 + (TG)n Simple_repeat Simple_repeat 2 81 0 8 1004 305 375 51 15 chr6 54994682 54994877 -94522160 - MER20B DNA MER1_type -196 587 386 8 1004 254 259 59 0 chr6 54996049 54996134 -94520903 - L1MEd LINE L1 -5068 1051 962 8 1004 254 150 126 0 chr6 54996727 54996781 -94520256 + ID4 SINE ID 3 63 -20 8 1004 742 255 57 32 chr6 54997058 54997341 -94519696 - B4A SINE B4 0 292 3 8 1004 263 276 115 0 chr6 54997437 54997524 -94519513 - PB1D10 SINE Alu 0 117 21 8 1004 411 38 0 0 chr6 54997723 54997776 -94519261 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1004 971 164 137 95 chr6 54998189 54998452 -94518585 - ORR1B1 LTR MaLR -116 278 5 8 1004 740 127 57 43 chr6 54998644 54998784 -94518253 - B1_Mus1 SINE Alu -5 143 2 8 1004 1085 59 0 0 chr6 54998838 54998973 -94518064 - B1_Mus2 SINE Alu 0 147 13 8 1004 2014 212 137 63 chr6 54998976 54999609 -94517428 - Lx7 LINE L1 -70 7626 6947 8 1004 433 363 30 0 chr6 55000617 55000752 -94516285 + RSINE1 SINE B4 19 157 -8 1 1004 4023 136 86 0 chr6 55001481 55002130 -94514907 - RMER19A LTR ERVK 0 737 33 2 1004 305 250 59 0 chr6 55002458 55002526 -94514511 + ID4_ SINE ID 2 73 -10 3 1004 1198 117 21 18 chr6 55002610 55002806 -94514231 + B2_Mm2 SINE B2 5 213 -3 4 1004 1175 122 11 0 chr6 55002825 55003005 -94514032 - B2_Mm1t SINE B2 -11 182 1 5 1004 465 317 28 0 chr6 55003359 55003501 -94513536 - B1F SINE Alu -3 146 1 6 1004 506 278 0 38 chr6 55003624 55003755 -94513282 - RSINE1 SINE B4 -37 128 3 7 1004 24 0 0 0 chr6 55004091 55004115 -94512922 + AT_rich Low_complexity Low_complexity 1 24 0 8 1004 577 127 263 0 chr6 55004272 55004390 -94512647 - B1_Mur2 SINE Alu 0 149 1 9 1004 488 302 20 30 chr6 55005404 55005602 -94511435 - L1MC5 LINE L1 -1044 6917 6722 1 1004 351 299 17 25 chr6 55006144 55006264 -94510773 + MER3 DNA MER1_type 67 185 -24 1 1004 289 226 69 35 chr6 55006661 55006748 -94510289 - RSINE1 SINE B4 -64 101 12 1 1004 1853 185 147 0 chr6 55006754 55007121 -94509916 + MTC LTR MaLR 1 421 0 1 1004 966 231 111 70 chr6 55007567 55007753 -94509284 + ORR1D1 LTR MaLR 1 187 -187 1 1004 1258 0 0 0 chr6 55007753 55007899 -94509138 - L1Md_T LINE L1 0 6582 6437 1 1004 966 231 111 70 chr6 55007899 55008071 -94508966 + ORR1D1 LTR MaLR 188 373 -1 1 1004 675 206 55 28 chr6 55008183 55008328 -94508709 + B3 SINE B2 68 216 0 1 1004 285 141 29 86 chr6 55008684 55008754 -94508283 - ORR1D1 LTR MaLR -3 371 306 1 1004 1234 323 110 18 chr6 55008757 55008872 -94508165 - Lx7 LINE L1 -29 7444 7305 1 1004 504 0 0 0 chr6 55008872 55008928 -94508109 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1004 3048 241 185 18 chr6 55008928 55009942 -94507095 - Lx7 LINE L1 -169 7304 6106 1 1004 311 259 140 73 chr6 55009933 55010083 -94506954 + L1_Mur3 LINE L1 4200 4359 -1521 2 1004 329 348 89 17 chr6 55010079 55010316 -94506721 + Lx7 LINE L1 5815 6068 -1628 2 1004 1251 208 121 7 chr6 55010325 55010630 -94506407 - ORR1D1 LTR MaLR -30 344 5 2 1004 192 40 0 0 chr6 55011325 55011350 -94505687 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 2 1004 316 283 48 39 chr6 55013562 55013665 -94503372 + RSINE1 SINE B4 3 106 -59 2 1004 1105 218 153 53 chr6 55014001 55014253 -94502784 - MTD LTR MaLR -21 398 127 2 1004 1800 193 111 119 chr6 55014253 55014765 -94502272 - RLTR18B LTR ERVK -4 508 1 2 1004 1105 218 153 53 chr6 55014765 55014871 -94502166 - MTD LTR MaLR -293 126 4 2 1004 584 173 98 18 chr6 55015098 55015210 -94501827 - B1_Mur2 SINE Alu 0 149 29 2 1004 314 271 39 87 chr6 55016171 55016313 -94500724 - PB1D10 SINE Alu -15 134 1 2 1004 250 309 70 30 chr6 55016235 55016335 -94500702 - B4 SINE B4 -125 167 64 2 1004 337 258 31 41 chr6 55016378 55016390 -94500647 - ID_B1 SINE B4 -2 222 212 3 1004 333 0 0 0 chr6 55016390 55016427 -94500610 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 3 1004 337 258 31 41 chr6 55016427 55016511 -94500526 - ID_B1 SINE B4 -13 211 127 3 1004 1111 54 0 51 chr6 55016725 55016881 -94500156 - B1_Mus1 SINE Alu 0 148 1 3 1004 243 259 67 45 chr6 55017378 55017467 -94499570 - MLT1A0 LTR MaLR -202 163 73 3 1004 640 258 6 44 chr6 55018616 55018774 -94498263 - RSINE1 SINE B4 -10 155 4 3 1004 218 32 0 31 chr6 55018894 55018926 -94498111 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1004 878 272 47 8 chr6 55018928 55019184 -94497853 - B4A SINE B4 -26 266 1 3 1004 369 260 44 66 chr6 55020691 55020872 -94496165 + L1MEc LINE L1 1366 1542 -4858 3 1004 310 312 55 9 chr6 55021064 55021174 -94495863 + B4 SINE B4 5 119 -173 3 1004 218 140 70 0 chr6 55021740 55021797 -94495240 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1004 283 286 100 20 chr6 55021801 55021951 -94495086 + L1MEc LINE L1 2493 2654 -3665 3 1004 895 135 14 47 chr6 55024306 55024454 -94492583 + B1_Mur4 SINE Alu 2 144 -6 4 1004 312 239 98 43 chr6 55024683 55024775 -94492262 - B1F1 SINE Alu -52 97 1 4 1004 1156 184 48 0 chr6 55024809 55025015 -94492022 - B3 SINE B2 0 216 1 4 1004 183 265 0 20 chr6 55028026 55028076 -94488961 + L4 LINE RTE 653 701 -1328 4 1004 258 329 96 45 chr6 55028452 55028630 -94488407 + MER5A DNA MER1_type 3 189 0 4 1004 290 283 177 11 chr6 55029599 55029785 -94487252 - L1MB8 LINE L1 -5 6173 5957 4 1004 1183 37 0 0 chr6 55031084 55031219 -94485818 + B1_Mus2 SINE Alu 1 135 -12 4 1004 180 0 0 0 chr6 55031219 55031239 -94485798 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4 1004 184 220 203 0 chr6 55031995 55032054 -94484983 - MER5B DNA MER1_type -4 174 104 4 1004 252 0 0 0 chr6 55033743 55033771 -94483266 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1004 982 274 63 70 chr6 55033859 55034256 -94482781 + RMER5 LTR ERV1 126 519 -15 5 1004 247 156 44 0 chr6 55035746 55035791 -94481246 - MER94 DNA AcHobo 0 134 88 5 1004 420 261 49 112 chr6 55035904 55036128 -94480909 - ID_B1 SINE B4 -13 211 2 5 1004 1157 68 0 20 chr6 55038030 55038180 -94478857 + B1_Mus1 SINE Alu 2 148 0 5 1004 261 0 0 0 chr6 55038181 55038210 -94478827 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 5 1004 441 291 133 78 chr6 55038563 55038872 -94478165 + Charlie2b DNA MER1_type 1908 2233 -549 5 1004 255 271 0 0 chr6 55038872 55038931 -94478106 + RSINE1 SINE B4 3 61 -104 5 1004 654 24 36 0 chr6 55038935 55038994 -94478043 - ORR1A1 LTR MaLR 0 346 288 5 1004 405 0 0 0 chr6 55038994 55039039 -94477998 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 5 1004 654 24 36 0 chr6 55039039 55039063 -94477974 - ORR1A1 LTR MaLR -59 287 261 5 1004 1233 66 0 0 chr6 55039060 55039227 -94477810 - ORR1A1-int LTR MaLR -1231 561 395 5 1004 1268 93 107 5 chr6 55039207 55039412 -94477625 - ORR1A1-int LTR MaLR -54 1738 1513 5 1004 349 264 11 33 chr6 55039407 55039497 -94477540 + RSINE1 SINE B4 65 152 -13 5 1004 23 0 0 0 chr6 55039565 55039588 -94477449 + AT_rich Low_complexity Low_complexity 1 23 0 5 1004 334 247 52 164 chr6 55039588 55039704 -94477333 + PB1D10 SINE Alu 15 117 0 6 1004 381 287 111 23 chr6 55039900 55040071 -94476966 + Charlie2b DNA MER1_type 2569 2754 -28 5 1004 295 188 63 10 chr6 55040889 55040989 -94476048 + MIRc SINE MIR 82 192 -84 6 1004 405 0 0 0 chr6 55041925 55041970 -94475067 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1004 362 311 106 20 chr6 55041972 55042123 -94474914 - RSINE1 SINE B4 0 165 2 6 1004 216 0 0 0 chr6 55042916 55042940 -94474097 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 6 1004 279 321 14 14 chr6 55044777 55044919 -94472118 + (TCCA)n Simple_repeat Simple_repeat 3 144 0 6 1004 270 349 64 29 chr6 55049836 55050007 -94467030 - L3 LINE CR1 -106 4383 4207 6 1005 368 240 0 13 chr6 55050985 55051061 -94465976 - ID4_ SINE ID -3 80 6 6 1005 547 264 28 7 chr6 55051077 55051218 -94465819 - B1F1 SINE Alu -2 147 4 6 1005 1014 128 0 0 chr6 55051376 55051517 -94465520 + B1_Mus2 SINE Alu 1 141 -6 6 1005 363 23 0 0 chr6 55051522 55051566 -94465471 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1005 396 0 0 0 chr6 55052194 55052238 -94464799 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1005 272 297 27 0 chr6 55053540 55053614 -94463423 + ID4_ SINE ID 2 77 -6 7 1005 300 120 0 0 chr6 55053620 55053670 -94463367 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1005 251 246 16 0 chr6 55054252 55054313 -94462724 + ID4 SINE ID 4 65 -18 7 1005 207 231 0 0 chr6 55055315 55055354 -94461683 - MIR SINE MIR -115 147 109 7 1005 880 260 15 29 chr6 55056321 55056527 -94460510 + B3 SINE B2 9 211 -5 7 1005 382 339 32 40 chr6 55057030 55057282 -94459755 - MER112 DNA MER1_type -8 253 4 7 1005 186 368 47 9 chr6 55058002 55058109 -94458928 + MIR SINE MIR 31 141 -67 7 1005 432 242 33 0 chr6 55060631 55060722 -94456315 + MTD LTR MaLR 120 213 -206 7 1005 263 281 37 0 chr6 55061058 55061140 -94455897 + L1_Rod LINE L1 5752 5836 -11 8 1005 180 0 0 0 chr6 55061391 55061411 -94455626 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1005 400 269 88 22 chr6 55061455 55061592 -94455445 + RSINE1 SINE B4 3 148 -17 8 1005 21 57 0 0 chr6 55061617 55061652 -94455385 + AT_rich Low_complexity Low_complexity 1 35 0 8 1005 312 311 7 29 chr6 55063193 55063332 -94453705 + GA-rich Low_complexity Low_complexity 5 140 0 8 1005 275 269 0 41 chr6 55063793 55063890 -94453147 - RSINE1 SINE B4 -71 94 2 8 1005 536 246 0 0 chr6 55063914 55064024 -94453013 - B1_Mur1 SINE Alu -38 111 2 8 1005 239 263 0 0 chr6 55064100 55064157 -94452880 + MIRc SINE MIR 97 153 -115 8 1005 402 286 30 30 chr6 55071250 55071448 -94445589 + Charlie23a DNA MER1_type 45 242 -97 8 1005 663 285 128 23 chr6 55072535 55072880 -94444157 + MLT1B LTR MaLR 4 384 -6 8 1005 191 279 49 0 chr6 55072880 55072941 -94444096 - MIR SINE MIR -90 118 55 9 1005 430 173 0 19 chr6 55074699 55074805 -94442232 + (TG)n Simple_repeat Simple_repeat 1 104 0 9 1005 423 0 0 0 chr6 55075614 55075661 -94441376 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1005 387 0 0 0 chr6 55075661 55075703 -94441334 + (GA)n Simple_repeat Simple_repeat 1 43 0 9 1005 207 69 0 0 chr6 55075928 55075957 -94441080 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 9 1005 209 299 43 0 chr6 55076215 55076304 -94440733 + MIRc SINE MIR 81 179 -97 9 1005 206 281 120 32 chr6 55076634 55076759 -94440278 - MIR SINE MIR -24 238 103 9 1005 391 281 0 10 chr6 55077054 55077151 -94439886 + MER21B LTR ERV1 20 115 -748 9 1005 1347 141 151 60 chr6 55077248 55077566 -94439471 + ORR1C2 LTR MaLR 38 384 0 9 1005 259 233 0 48 chr6 55078146 55078209 -94438828 + L2c LINE L2 3326 3385 -2 9 1005 378 0 0 0 chr6 55078210 55078252 -94438785 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 1 1005 328 321 23 18 chr6 55078798 55078969 -94438068 + GA-rich Low_complexity Low_complexity 3 174 0 1 1005 315 0 0 0 chr6 55079612 55079647 -94437390 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1 1005 1048 91 0 0 chr6 55079649 55079792 -94437245 - B1_Mus2 SINE Alu -4 143 1 1 1005 387 0 0 0 chr6 55079803 55079846 -94437191 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1005 315 0 0 0 chr6 55080444 55080479 -94436558 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1005 295 340 56 14 chr6 55081810 55081953 -94435084 - MIRb SINE MIR -23 245 97 1 1005 262 296 36 36 chr6 55082134 55082218 -94434819 + MIR3 SINE MIR 84 167 -41 1 1005 540 0 0 0 chr6 55082238 55082298 -94434739 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1005 741 43 0 0 chr6 55083813 55083906 -94433131 + (TC)n Simple_repeat Simple_repeat 1 93 0 1 1005 2070 139 82 14 chr6 55084055 55084420 -94432617 + ORR1B1 LTR MaLR 5 394 0 1 1005 186 133 0 0 chr6 55084781 55084811 -94432226 + (GGGGA)n Simple_repeat Simple_repeat 2 31 0 1 1005 245 300 133 21 chr6 55085279 55085422 -94431615 - MLT1A LTR MaLR -213 161 3 1 1005 230 217 0 0 chr6 55085616 55085662 -94431375 + LTR16A1 LTR ERVL 251 296 -160 1 1005 486 0 0 0 chr6 55085697 55085751 -94431286 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1005 741 146 163 0 chr6 55085757 55085935 -94431102 - Lx9 LINE L1 -7 7637 7431 1 1005 2920 168 112 2 chr6 55085929 55086043 -94430994 - RMER1A Other Other -1 1029 912 1 1005 189 107 0 0 chr6 55086043 55086071 -94430966 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1005 2920 207 72 113 chr6 55086071 55087115 -94429922 - RMER1A Other Other -129 937 86 1 1005 323 325 51 8 chr6 55087115 55087233 -94429804 - MER106A DNA MER1_type -92 144 22 1 1005 198 0 0 0 chr6 55088254 55088276 -94428761 + (TTTTTA)n Simple_repeat Simple_repeat 4 25 0 1 1005 934 141 58 0 chr6 55089327 55089343 -94427694 - B2_Mm2 SINE B2 -30 165 150 1 1005 252 0 0 0 chr6 55089343 55089371 -94427666 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1005 934 141 58 0 chr6 55089371 55089510 -94427527 - B2_Mm2 SINE B2 -46 149 2 1 1005 383 274 159 0 chr6 55089820 55089977 -94427060 - MLT1A LTR MaLR 0 374 193 1 1005 467 269 54 93 chr6 55090770 55090817 -94426220 + MLT1A LTR MaLR 1 54 -320 1 1005 1784 181 82 8 chr6 55090817 55091207 -94425830 + MTD LTR MaLR 1 419 0 1 1005 467 256 187 107 chr6 55091207 55091469 -94425568 + MLT1A LTR MaLR 54 335 -30 1 1005 198 336 118 0 chr6 55091591 55091701 -94425336 + MIRm SINE MIR 27 149 -127 1 1005 225 348 167 6 chr6 55092215 55092371 -94424666 - LTR85b LTR Gypsy? -30 754 574 1 1005 728 150 18 18 chr6 55092841 55093011 -94424026 + (TAGA)n Simple_repeat Simple_repeat 4 173 0 1 1005 314 316 78 50 chr6 55093011 55093191 -94423846 - MLT2C2 LTR ERVL -20 444 260 1 1005 944 242 19 41 chr6 55093297 55093454 -94423583 - MLT2C2 LTR ERVL -188 276 122 1 1005 4360 112 81 1 chr6 55093454 55094137 -94422900 - RMER19A LTR ERVK 0 737 1 1 1005 944 242 19 41 chr6 55094137 55094246 -94422791 - MLT2C2 LTR ERVL -343 121 16 1 1005 473 292 29 12 chr6 55094433 55094606 -94422431 + ORR1E LTR MaLR 18 193 -166 1 1005 232 287 114 53 chr6 55094710 55094824 -94422213 + ORR1E LTR MaLR 258 378 -1 1 1005 930 296 33 15 chr6 55095780 55096054 -94420983 + MER2 DNA MER2_type 67 345 0 1 1005 261 363 0 9 chr6 55096096 55096210 -94420827 - MIR SINE MIR -142 120 8 1 1005 307 245 49 0 chr6 55096409 55096511 -94420526 - U13_ snRNA snRNA -1 107 1 1 1005 309 366 53 22 chr6 55097043 55097269 -94419768 - Tigger5 DNA MER2_type -2164 242 10 1 1005 1109 75 0 0 chr6 55097305 55097452 -94419585 + B1_Mm SINE Alu 1 147 0 1 1005 849 47 0 0 chr6 55097469 55097575 -94419462 + (GAAA)n Simple_repeat Simple_repeat 1 106 0 1 1005 654 248 0 7 chr6 55097805 55097947 -94419090 - RSINE1 SINE B4 -21 144 4 1 1005 270 0 0 0 chr6 55098858 55098888 -94418149 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1005 270 0 0 0 chr6 55098888 55098917 -94418120 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1005 296 225 84 20 chr6 55098962 55099076 -94417961 + ID4_ SINE ID 14 130 -22 1 1005 218 294 143 0 chr6 55099180 55099306 -94417731 + MER5A DNA MER1_type 46 189 0 1 1005 390 21 0 0 chr6 55099966 55100013 -94417024 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1005 377 290 36 0 chr6 55100819 55100957 -94416080 - B1F1 SINE Alu -6 143 1 1 1005 386 341 104 30 chr6 55100998 55101336 -94415701 - L1M5 LINE L1 -395 5729 5367 1 1005 414 323 123 76 chr6 55101611 55102123 -94414914 - MLT1G1 LTR MaLR 0 579 44 1 1005 1311 210 28 132 chr6 55102521 55102921 -94414116 - MTE2a LTR MaLR -21 358 1 1 1005 363 196 9 29 chr6 55103100 55103205 -94413832 + GA-rich Low_complexity Low_complexity 3 105 0 1 1005 309 272 179 25 chr6 55103352 55103514 -94413523 - MIRb SINE MIR -3 265 79 1 1005 1205 259 71 33 chr6 55103521 55103857 -94413180 + ORR1E LTR MaLR 5 353 -6 1 1005 441 296 23 11 chr6 55104060 55104234 -94412803 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 1 1005 2305 200 31 37 chr6 55104637 55104728 -94412309 - RLTR20A LTR ERVK 0 541 451 1 1005 360 0 0 0 chr6 55104728 55104768 -94412269 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1005 2305 200 31 37 chr6 55104768 55105220 -94411817 - RLTR20A LTR ERVK -91 450 2 1 1005 25 31 0 0 chr6 55105862 55105894 -94411143 + AT_rich Low_complexity Low_complexity 1 32 0 1 1005 383 206 11 11 chr6 55106061 55106154 -94410883 - PB1D10 SINE Alu -23 94 2 1 1005 925 162 0 0 chr6 55106454 55106596 -94410441 + B1_Mus1 SINE Alu 1 142 -6 1 1005 754 223 34 24 chr6 55106756 55106963 -94410074 + ID_B1 SINE B4 3 211 -13 1 1005 1012 80 28 18 chr6 55106836 55106997 -94410040 + B1_Mus2 SINE Alu 8 311 0 1 1005 180 174 21 42 chr6 55109214 55109262 -94407775 - MIRc SINE MIR -114 154 108 1 1005 286 359 34 7 chr6 55109935 55110081 -94406956 + L2 LINE L2 2816 2965 -454 1 1005 1419 65 0 0 chr6 55110190 55110374 -94406663 - B2_Mm1a SINE B2 -9 184 1 1 1005 258 300 100 0 chr6 55112584 55112684 -94404353 + MIRb SINE MIR 43 152 -116 1 1005 1527 246 62 15 chr6 55112686 55113090 -94403947 + MT2A LTR ERVL 1 423 -110 1 1005 1252 135 122 4 chr6 55113093 55113323 -94403714 + ORR1C2 LTR MaLR 128 384 0 1 1005 293 111 0 0 chr6 55113327 55113372 -94403665 + MT2A LTR ERVL 487 531 -2 1 1005 322 306 44 18 chr6 55113382 55113495 -94403542 - L2b LINE L2 -1 3374 3259 1 1005 1249 258 91 5 chr6 55113761 55114146 -94402891 + MTD LTR MaLR 1 418 -1 1 1005 1715 226 3 0 chr6 55116309 55116614 -94400423 + MTD LTR MaLR 25 330 -89 1 1005 671 223 236 17 chr6 55117602 55117780 -94399257 + MTD LTR MaLR 1 217 -202 1 1005 956 207 87 38 chr6 55117836 55118102 -94398935 + MTC-int LTR MaLR 1 279 -979 1 1005 350 167 17 0 chr6 55118104 55118164 -94398873 + MTC-int LTR MaLR 232 292 -966 1 1005 205 296 8 39 chr6 55118299 55118429 -94398608 + CT-rich Low_complexity Low_complexity 5 130 0 1 1005 2216 220 67 44 chr6 55118572 55119020 -94398017 + MTC-int LTR MaLR 289 727 -531 1 1005 2445 131 39 65 chr6 55119020 55119454 -94397583 - RLTR23 LTR ERV1 -4 426 4 1 1005 2216 220 67 44 chr6 55119454 55119527 -94397510 + MTC-int LTR MaLR 728 821 -437 1 1005 1287 87 37 16 chr6 55119696 55119883 -94397154 - B2_Mm2 SINE B2 -2 193 3 1 1005 279 214 0 0 chr6 55121576 55121646 -94395391 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1005 437 178 0 62 chr6 55121646 55121742 -94395295 - B4 SINE B4 0 292 203 1 1005 708 259 31 25 chr6 55121910 55122072 -94394965 + RSINE1 SINE B4 3 165 0 1 1005 226 276 7 7 chr6 55122073 55122226 -94394811 + (CA)n Simple_repeat Simple_repeat 2 154 0 1 1005 204 254 0 106 chr6 55122731 55122797 -94394240 + MIRb SINE MIR 115 173 -95 1 1005 224 257 57 0 chr6 55122979 55123049 -94393988 - L2b LINE L2 -188 3187 3114 1 1005 256 271 77 119 chr6 55125226 55125511 -94391526 - RMER17A LTR ERVK -176 575 303 1 1005 1127 65 7 0 chr6 55125805 55125958 -94391079 + (TTTC)n Simple_repeat Simple_repeat 3 156 0 1 1005 1419 234 152 0 chr6 55126178 55126539 -94390498 - MTD LTR MaLR -16 403 4 1 1005 369 0 0 0 chr6 55126616 55126657 -94390380 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1005 357 259 0 0 chr6 55128190 55128271 -94388766 + MER20 DNA MER1_type 3 83 -136 1 1005 678 256 179 18 chr6 55128800 55129081 -94387956 + MLT2D LTR ERVL 71 414 0 1 1005 2531 143 17 5 chr6 55129129 55129537 -94387500 - MTC LTR MaLR -8 413 1 1 1005 232 262 155 0 chr6 55129826 55129910 -94387127 - MIR3 SINE MIR -42 166 70 1 1005 360 0 0 0 chr6 55130678 55130718 -94386319 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1005 708 69 13 52 chr6 55130990 55131143 -94385894 + (TCTCC)n Simple_repeat Simple_repeat 1 147 0 1 1005 287 221 210 16 chr6 55131185 55131325 -94385712 + MLT1J LTR MaLR 1 144 -368 1 1005 473 260 149 29 chr6 55131326 55131500 -94385537 + Lx8 LINE L1 6541 6735 -738 1 1005 592 312 76 57 chr6 55131804 55132120 -94384917 + ORR1E LTR MaLR 10 331 -28 1 1005 1592 290 149 40 chr6 55132132 55132955 -94384082 - Lx8 LINE L1 -5 7468 6556 1 1005 609 264 148 26 chr6 55133065 55133404 -94383633 - L1MC4 LINE L1 -701 7341 6962 1 1005 2918 85 19 3 chr6 55134080 55134459 -94382578 - IAPEY_LTR LTR ERVK 0 385 1 1 1005 20288 63 7 6 chr6 55134459 55137167 -94379870 - IAPEy-int LTR ERVK 0 7513 4804 1 1005 6445 109 14 54 chr6 55137167 55138269 -94378768 - IAPEy-int LTR ERVK -6455 1058 1 1 1005 2907 79 19 3 chr6 55138269 55138648 -94378389 - IAPEY_LTR LTR ERVK 0 385 1 1 1005 1125 279 50 28 chr6 55138872 55139189 -94377848 - ORR1E LTR MaLR -10 349 26 1 1005 4009 251 102 44 chr6 55139198 55140702 -94376335 - MTD-int LTR MaLR 0 1580 2 1 1005 346 164 0 0 chr6 55140702 55140747 -94376290 - MTD-int LTR MaLR -1383 197 153 1 1005 3697 219 29 67 chr6 55140784 55140900 -94376137 + RLTR42-int LTR ERVK 544 648 -4874 1 1005 766 183 234 0 chr6 55140900 55141075 -94375962 + B3 SINE B2 1 216 0 1 1005 3697 219 29 67 chr6 55141075 55142010 -94375027 + RLTR42-int LTR ERVK 649 1555 -3967 1 1005 928 175 16 11 chr6 55142038 55142229 -94374808 + B2_Mm2 SINE B2 3 194 -1 1 1005 461 190 71 211 chr6 55142261 55142541 -94374496 + RLTR42-int LTR ERVK 1538 1778 -3744 1 1005 486 0 0 0 chr6 55142601 55142655 -94374382 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1005 1338 151 20 12 chr6 55142954 55143208 -94373829 + RLTR42-int LTR ERVK 1926 2181 -3341 1 1005 346 285 31 56 chr6 55143209 55143369 -94373668 - RLTR14 LTR ERV1 -3 379 224 2 1005 5294 156 36 46 chr6 55143641 55144643 -94372394 + RLTR42-int LTR ERVK 2178 3176 -2346 1 1005 2448 146 146 16 chr6 55144643 55145083 -94371954 - RLTR19 LTR ERVK -2 497 1 2 1005 5294 156 36 46 chr6 55145083 55145100 -94371937 + RLTR42-int LTR ERVK 3177 3187 -2335 1 1005 4606 171 75 78 chr6 55145099 55145767 -94371270 + RLTR42-int LTR ERVK 3727 4403 -1119 1 1005 2240 111 18 9 chr6 55145767 55146093 -94370944 - ORR1A4 LTR MaLR 0 329 1 2 1005 4606 171 75 78 chr6 55146093 55146314 -94370723 + RLTR42-int LTR ERVK 4404 4632 -890 1 1005 912 158 7 14 chr6 55146314 55146462 -94370575 + B1_Mus2 SINE Alu 1 147 0 2 1005 4606 171 75 78 chr6 55146462 55146779 -94370258 + RLTR42-int LTR ERVK 4633 4931 -591 1 1005 227 277 95 11 chr6 55147455 55147550 -94369487 + ORR1A1-int LTR MaLR 964 1066 -726 2 1005 898 152 70 6 chr6 55147658 55147732 -94369305 - B2_Mm2 SINE B2 -2 193 114 2 1005 360 0 0 0 chr6 55147732 55147772 -94369265 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1005 898 152 70 6 chr6 55147772 55147869 -94369168 - B2_Mm2 SINE B2 -82 113 13 2 1005 304 299 84 0 chr6 55147960 55148067 -94368970 + RSINE1 SINE B4 2 117 -48 2 1005 928 81 13 7 chr6 55149479 55149629 -94367408 - L1_Mus3 LINE L1 0 6638 6488 2 1005 315 0 0 0 chr6 55149879 55149914 -94367123 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1005 405 0 0 0 chr6 55149914 55149958 -94367079 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1005 389 302 57 7 chr6 55150008 55150148 -94366889 + L2a LINE L2 2719 2865 -554 2 1005 1575 47 11 0 chr6 55150175 55150366 -94366671 + B2_Mm1t SINE B2 1 193 0 2 1005 186 313 152 0 chr6 55150881 55150980 -94366057 + L2a LINE L2 2989 3102 -324 2 1005 351 215 40 61 chr6 55151058 55151157 -94365880 - B4 SINE B4 0 292 196 2 1005 668 212 44 22 chr6 55151159 55151342 -94365695 - MT2A LTR ERVL -346 187 1 2 1005 189 0 0 0 chr6 55151387 55151408 -94365629 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1005 375 133 13 51 chr6 55151411 55151490 -94365547 - PB1D9 SINE Alu 0 120 45 2 1005 870 245 152 125 chr6 55151496 55151684 -94365353 + MTE2a LTR MaLR 1 180 -199 2 1005 970 199 73 15 chr6 55151684 55151888 -94365149 + B3 SINE B2 1 216 0 2 1005 870 245 152 125 chr6 55151888 55152068 -94364969 + MTE2a LTR MaLR 181 379 0 2 1005 844 284 118 22 chr6 55152553 55152909 -94364128 + MLT1B LTR MaLR 1 390 0 2 1005 188 95 65 87 chr6 55152976 55153022 -94364015 + L2 LINE L2 2520 2564 -855 2 1005 540 68 0 0 chr6 55154232 55154305 -94362732 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1005 360 348 9 0 chr6 55154470 55154585 -94362452 - ID_B1 SINE B4 -30 194 79 2 1005 1964 172 85 42 chr6 55155419 55155819 -94361218 + MTC LTR MaLR 1 417 -4 2 1005 401 319 14 36 chr6 55155887 55156027 -94361010 - ID_B1 SINE B4 -9 215 79 2 1005 191 362 31 21 chr6 55156128 55156224 -94360813 - MIR SINE MIR -77 185 89 2 1005 244 340 160 24 chr6 55156617 55156867 -94360170 + L2 LINE L2 1053 1336 -2083 2 1005 363 78 0 0 chr6 55158100 55158151 -94358886 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1005 471 293 119 48 chr6 55158233 55158502 -94358535 - B4A SINE B4 -4 288 1 2 1005 2090 62 13 50 chr6 55158889 55159192 -94357845 + L1_Mus1 LINE L1 6276 6567 0 2 1005 1619 26 16 0 chr6 55159201 55159391 -94357646 + B2_Mm1a SINE B2 1 193 0 2 1005 297 0 0 0 chr6 55159725 55159758 -94357279 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1005 304 181 11 67 chr6 55159910 55159999 -94357038 + HAL1-3A_ME LINE L1 1944 2027 -831 2 1005 660 87 0 0 chr6 55160128 55160220 -94356817 + (TCCC)n Simple_repeat Simple_repeat 3 94 0 2 1005 1442 83 5 5 chr6 55160230 55160424 -94356613 - B2_Mm2 SINE B2 0 195 2 2 1005 252 0 0 0 chr6 55161635 55161663 -94355374 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1005 405 0 0 0 chr6 55161663 55161707 -94355330 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1005 286 266 72 72 chr6 55161901 55162039 -94354998 + L2b LINE L2 3176 3313 -62 2 1005 602 239 42 14 chr6 55162315 55162459 -94354578 - B1F SINE Alu 0 149 2 2 1005 636 259 222 4 chr6 55162496 55162721 -94354316 + B4A SINE B4 1 274 -18 2 1005 396 0 0 0 chr6 55162738 55162782 -94354255 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1005 1259 92 49 0 chr6 55163488 55163673 -94353364 - B2_Mm2 SINE B2 0 195 2 2 1005 624 222 36 62 chr6 55163825 55164017 -94353020 - RLTR23 LTR ERV1 0 430 244 2 1005 773 118 16 0 chr6 55165095 55165222 -94351815 + (TTCTC)n Simple_repeat Simple_repeat 3 131 0 2 1005 207 0 0 0 chr6 55165223 55165246 -94351791 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 2 1005 1212 93 0 0 chr6 55165246 55165418 -94351619 + (TTTC)n Simple_repeat Simple_repeat 3 174 0 2 1005 399 218 50 66 chr6 55165418 55165600 -94351437 - RMER17C LTR ERVK -139 271 93 2 1005 665 331 63 18 chr6 55165678 55166013 -94351024 - ORR1E LTR MaLR -5 354 5 2 1005 315 267 0 0 chr6 55166076 55166136 -94350901 + RSINE1 SINE B4 80 139 -26 2 1005 239 262 150 20 chr6 55166291 55166402 -94350635 + L2a LINE L2 3251 3425 -1 2 1005 507 95 0 0 chr6 55166836 55166910 -94350127 + (TCCC)n Simple_repeat Simple_repeat 4 77 0 2 1005 195 139 0 0 chr6 55167369 55167405 -94349632 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1005 266 0 0 29 chr6 55167406 55167441 -94349596 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 2 1005 238 261 0 30 chr6 55169190 55169257 -94347780 + L3 LINE CR1 4013 4077 -412 2 1005 459 282 43 0 chr6 55169760 55169877 -94347160 - Charlie1 DNA MER1_type -2 2779 2658 2 1005 528 266 0 0 chr6 55169879 55169988 -94347049 + B3A SINE B2 1 109 -89 2 1005 357 24 0 0 chr6 55170152 55170194 -94346843 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1005 1171 277 136 78 chr6 55170204 55170788 -94346249 - Charlie1 DNA MER1_type -109 2672 2099 2 1005 408 40 0 0 chr6 55170788 55170838 -94346199 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1005 1171 277 136 78 chr6 55170838 55171063 -94345974 - Charlie1 DNA MER1_type -683 2098 1816 2 1005 336 345 0 92 chr6 55171130 55171315 -94345722 - Charlie1 DNA MER1_type -1089 1692 1525 2 1005 251 307 53 0 chr6 55171798 55171873 -94345164 - Charlie1 DNA MER1_type -2702 79 1 2 1005 363 235 58 10 chr6 55172741 55172844 -94344193 - MER46C DNA MER2_type -11 327 220 2 1005 2270 192 129 46 chr6 55173176 55173868 -94343169 + Lx7 LINE L1 6948 7696 0 2 1005 294 286 75 27 chr6 55175042 55175229 -94341808 - L1MEg LINE L1 -2664 3657 3462 2 1005 4061 38 0 0 chr6 55175591 55176061 -94340976 - L1Md_T LINE L1 0 6582 6113 2 1005 20104 16 0 0 chr6 55176061 55178651 -94338386 + L1Md_A LINE L1 3510 6099 -483 2 1005 267 307 51 25 chr6 55178703 55178900 -94338137 - L1MEg LINE L1 -4857 1560 1359 2 1005 551 173 9 0 chr6 55178900 55179010 -94338027 + CT-rich Low_complexity Low_complexity 3 113 0 2 1005 321 292 39 52 chr6 55179010 55179165 -94337872 - L1MEg LINE L1 -5228 1280 1128 2 1005 473 296 130 22 chr6 55179242 55179566 -94337471 - L1MEg LINE L1 -5160 1257 899 2 1005 211 338 0 0 chr6 55179591 55179659 -94337378 - RSINE1 SINE B4 -19 146 79 2 1005 248 317 123 19 chr6 55180358 55180464 -94336573 + L2c LINE L2 3250 3366 -21 2 1005 225 308 77 0 chr6 55180583 55180661 -94336376 - MIRc SINE MIR -116 152 69 2 1006 258 294 12 12 chr6 55181365 55181451 -94335586 + CT-rich Low_complexity Low_complexity 2 87 0 2 1006 554 284 53 56 chr6 55182021 55182279 -94334758 - MLT1D LTR MaLR -21 446 217 2 1006 182 226 93 19 chr6 55183701 55183755 -94333282 - L2 LINE L2 -2918 501 444 2 1006 186 188 0 56 chr6 55184606 55184713 -94332324 + (CCAA)n Simple_repeat Simple_repeat 1 101 0 2 1006 246 128 0 0 chr6 55184986 55185025 -94332012 + (CCTG)n Simple_repeat Simple_repeat 1 39 0 2 1006 259 274 107 73 chr6 55186078 55186235 -94330802 - MIR SINE MIR -1 267 103 2 1006 2168 138 87 13 chr6 55186259 55186649 -94330388 - MTC LTR MaLR 0 421 3 2 1006 369 256 31 9 chr6 55186889 55187019 -94330018 - L1MA6 LINE L1 -3 6288 6165 2 1006 468 171 75 9 chr6 55187015 55187121 -94329916 - L1MA5 LINE L1 -6 6294 6182 2 1006 302 353 10 0 chr6 55188078 55188180 -94328857 + Tigger14a DNA MER2_type 75 177 -147 2 1006 2409 105 6 0 chr6 55188514 55188839 -94328198 - ORR1A2 LTR MaLR 0 327 1 2 1006 2118 94 10 10 chr6 55188839 55189150 -94327887 - ORR1A2-int LTR MaLR 0 1963 1653 2 1006 309 26 0 0 chr6 55190170 55190208 -94326829 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1006 315 0 0 0 chr6 55191099 55191134 -94325903 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1006 682 169 131 0 chr6 55191134 55191264 -94325773 - B1_Mus2 SINE Alu 0 147 1 2 1006 237 172 0 0 chr6 55192136 55192200 -94324837 + A-rich Low_complexity Low_complexity 1 64 0 2 1006 247 325 25 33 chr6 55192204 55192325 -94324712 + PB1 SINE Alu 1 120 -7 2 1006 301 316 0 0 chr6 55192349 55192428 -94324609 + ID4 SINE ID 1 79 -4 2 1006 1332 246 18 3 chr6 55192716 55193001 -94324036 - B4A SINE B4 -3 289 1 2 1006 317 325 24 32 chr6 55193016 55193140 -94323897 - B1F1 SINE Alu -26 123 1 2 1006 262 252 24 112 chr6 55193479 55193604 -94323433 + MIRc SINE MIR 117 233 -35 2 1006 716 214 28 14 chr6 55194669 55194811 -94322226 - B1_Mur2 SINE Alu -5 144 1 2 1006 407 324 43 14 chr6 55194696 55194834 -94322203 - B4 SINE B4 -88 204 63 2 1006 1030 152 138 25 chr6 55195196 55195399 -94321638 + URR1A DNA MER1_type 1 226 0 2 1006 1139 79 0 22 chr6 55196209 55196390 -94320647 + (GAA)n Simple_repeat Simple_repeat 3 179 0 2 1006 202 61 61 0 chr6 55197751 55197784 -94319253 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1006 257 309 16 65 chr6 55197928 55198068 -94318969 - PB1 SINE Alu -21 128 3 2 1006 366 284 43 55 chr6 55198147 55198311 -94318726 - RSINE1 SINE B4 0 165 4 2 1006 231 325 105 8 chr6 55198994 55199233 -94317804 - L1MEe LINE L1 -3543 2839 2578 2 1006 891 172 76 62 chr6 55199376 55199587 -94317450 - B3 SINE B2 0 216 3 2 1006 243 271 228 15 chr6 55199962 55200168 -94316869 - L1M4 LINE L1 -325 5849 5600 2 1006 323 312 185 23 chr6 55200443 55200760 -94316277 - L1MEe LINE L1 -4485 1917 1574 2 1006 285 244 11 11 chr6 55201204 55201291 -94315746 - L1MC4 LINE L1 -212 7830 7744 2 1006 5525 196 36 38 chr6 55201368 55202546 -94314491 - Lx6 LINE L1 -2 7458 6283 2 1006 186 343 29 0 chr6 55203173 55203243 -94313794 + MIR SINE MIR 32 103 -159 2 1006 273 320 63 16 chr6 55203345 55203472 -94313565 - MLT1D LTR MaLR -7 498 366 3 1006 309 227 196 0 chr6 55203594 55203691 -94313346 - MLT1D LTR MaLR -364 141 26 3 1006 615 62 0 0 chr6 55205310 55205390 -94311647 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 3 1006 935 148 56 0 chr6 55205810 55205952 -94311085 + B1_Mur4 SINE Alu 1 150 0 3 1006 252 184 0 0 chr6 55205984 55206033 -94311004 + (TATG)n Simple_repeat Simple_repeat 4 52 0 3 1006 488 248 0 0 chr6 55206045 55206146 -94310891 + PB1D10 SINE Alu 10 110 -7 3 1006 675 0 0 0 chr6 55207952 55208027 -94309010 + (CATCC)n Simple_repeat Simple_repeat 5 79 0 3 1006 607 180 122 8 chr6 55208056 55208179 -94308858 + B1F SINE Alu 5 141 -8 3 1006 434 88 0 14 chr6 55208232 55208301 -94308736 + (TCC)n Simple_repeat Simple_repeat 3 70 0 3 1006 401 72 29 0 chr6 55208304 55208373 -94308664 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 3 1006 315 269 0 0 chr6 55209111 55209189 -94307848 - L1ME5 LINE L1 -291 5903 5826 3 1006 223 351 0 0 chr6 55209814 55209928 -94307109 + (TATATG)n Simple_repeat Simple_repeat 2 115 0 3 1006 220 250 118 0 chr6 55210781 55210857 -94306180 + MIRc SINE MIR 9 93 -175 3 1006 785 279 35 15 chr6 55211850 55212050 -94304987 - MER58A DNA MER1_type -15 209 6 3 1006 582 114 0 0 chr6 55212156 55212244 -94304793 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 1006 357 274 16 66 chr6 55212281 55212402 -94304635 - MER5B DNA MER1_type -58 120 6 3 1006 397 297 101 70 chr6 55214864 55215092 -94301945 + L2b LINE L2 3141 3375 0 3 1006 287 240 37 83 chr6 55215078 55215187 -94301850 - L2b LINE L2 -249 3126 3023 3 1006 759 117 53 0 chr6 55215670 55215841 -94301196 + GA-rich Low_complexity Low_complexity 1 180 0 3 1006 256 266 12 42 chr6 55216326 55216491 -94300546 + (TTGTG)n Simple_repeat Simple_repeat 3 162 0 3 1006 231 220 47 30 chr6 55217350 55217435 -94299602 - MIR SINE MIR -60 148 62 3 1006 402 21 0 0 chr6 55217652 55217699 -94299338 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1006 4494 14 2 0 chr6 55217752 55218244 -94298793 - MT2_Mm LTR ERVL 0 493 1 3 1006 305 0 0 0 chr6 55218244 55218282 -94298755 - MERVL-int LTR ERVL 0 5485 5448 3 1006 399 167 46 35 chr6 55218282 55218369 -94298668 - ORR1A3-int LTR MaLR -1323 640 553 3 1006 29265 18 0 0 chr6 55218369 55221748 -94295289 - MERVL-int LTR ERVL -125 5360 1981 3 1006 4809 11 0 0 chr6 55221739 55222294 -94294743 - MERVL-int LTR ERVL -4930 555 1 3 1006 4518 14 2 0 chr6 55222294 55222786 -94294251 - MT2_Mm LTR ERVL 0 493 1 3 1006 611 195 102 27 chr6 55224491 55224647 -94292390 + B3 SINE B2 9 163 -30 3 1006 423 0 0 0 chr6 55225686 55225733 -94291304 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1006 428 275 120 27 chr6 55227147 55227330 -94289707 + MIR SINE MIR 7 206 -56 3 1006 235 306 61 0 chr6 55227549 55227647 -94289390 - MIR SINE MIR -80 128 25 3 1006 194 146 42 0 chr6 55228263 55228311 -94288726 + (GCTTG)n Simple_repeat Simple_repeat 3 52 0 3 1006 22 0 0 0 chr6 55231445 55231467 -94285570 + AT_rich Low_complexity Low_complexity 1 22 0 3 1006 187 250 50 0 chr6 55232137 55232197 -94284840 + L2a LINE L2 3028 3090 -336 3 1006 255 225 88 0 chr6 55232401 55232508 -94284529 - PB1D7 SINE Alu -7 142 23 3 1006 267 264 41 14 chr6 55232692 55232765 -94284272 - L4 LINE RTE -203 1826 1752 3 1006 907 181 25 13 chr6 55232931 55233142 -94283895 - MTD LTR MaLR 0 419 153 3 1006 407 162 0 72 chr6 55233177 55233370 -94283667 + GA-rich Low_complexity Low_complexity 2 180 0 3 1006 973 219 129 41 chr6 55233382 55233535 -94283502 - MTD LTR MaLR -104 315 135 3 1006 789 234 6 0 chr6 55233535 55233706 -94283331 - Lx6 LINE L1 -2 7458 7287 3 1006 973 219 129 41 chr6 55233706 55233823 -94283214 - MTD LTR MaLR -285 134 21 3 1006 258 253 13 0 chr6 55235984 55236063 -94280974 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 1006 594 63 0 0 chr6 55237886 55237965 -94279072 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1006 1723 199 6 21 chr6 55239808 55240147 -94276890 - MTC LTR MaLR 0 421 88 3 1006 564 189 13 92 chr6 55240181 55240333 -94276704 + URR1B DNA MER1_type 86 225 0 3 1006 522 191 27 9 chr6 55240333 55240442 -94276595 - MTC LTR MaLR -310 111 1 3 1006 282 354 122 10 chr6 55242132 55242329 -94274708 - MIRb SINE MIR -48 220 2 3 1006 209 284 67 13 chr6 55242899 55242974 -94274063 + MIRc SINE MIR 112 190 -78 3 1006 642 136 0 0 chr6 55243871 55244003 -94273034 + (TG)n Simple_repeat Simple_repeat 2 133 0 3 1006 313 277 0 0 chr6 55244008 55244073 -94272964 - ID2 SINE ID -5 78 14 3 1006 541 156 138 0 chr6 55244191 55244300 -94272737 - B1_Mus1 SINE Alu -6 142 19 3 1006 429 216 0 83 chr6 55244211 55244332 -94272705 - MT2B LTR ERVL -338 263 153 3 1006 296 274 0 56 chr6 55244316 55244405 -94272632 - ID_B1 SINE B4 -67 157 74 3 1006 235 245 159 9 chr6 55244415 55244522 -94272515 - MIR3 SINE MIR -41 167 45 3 1006 441 0 0 0 chr6 55245240 55245289 -94271748 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1006 264 296 0 27 chr6 55246391 55246464 -94270573 + polypyrimidine Low_complexity Low_complexity 1 71 0 3 1006 899 224 55 23 chr6 55246584 55246803 -94270234 + B4A SINE B4 2 227 -65 3 1006 609 247 0 120 chr6 55246986 55247170 -94269867 + RSINE1 SINE B4 2 163 -2 3 1006 239 288 45 0 chr6 55247173 55247239 -94269798 + B4A SINE B4 220 288 -4 3 1006 571 212 0 9 chr6 55248833 55248947 -94268090 - PB1D10 SINE Alu 0 117 5 3 1006 715 102 15 0 chr6 55249238 55249375 -94267662 + (CA)n Simple_repeat Simple_repeat 2 140 0 3 1006 528 194 0 13 chr6 55250297 55250424 -94266613 + L1MC4a LINE L1 7765 7995 0 3 1006 514 305 101 60 chr6 55251469 55251807 -94265230 - MLT1C LTR MaLR -53 337 6 3 1006 227 206 15 73 chr6 55252064 55252132 -94264905 - LTR52 LTR ERVL -65 356 293 3 1006 1141 252 79 14 chr6 55253154 55253520 -94263517 + MLT1B LTR MaLR 1 390 0 3 1006 240 320 30 30 chr6 55253815 55253915 -94263122 + Kanga1c DNA Tc2 2 101 -628 3 1006 425 333 73 0 chr6 55254239 55254389 -94262648 + RSINE1 SINE B4 3 163 -2 3 1006 270 0 0 0 chr6 55254528 55254558 -94262479 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1006 342 0 0 0 chr6 55254558 55254595 -94262442 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1006 192 97 0 0 chr6 55255065 55255096 -94261941 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1006 213 309 167 21 chr6 55255144 55255159 -94261878 + ID_B1 SINE B4 70 98 -126 3 1006 267 301 154 4 chr6 55255159 55255287 -94261750 + PB1D10 SINE Alu 3 148 -1 3 1006 777 171 83 79 chr6 55256797 55257009 -94260028 + RMER17C LTR ERVK 1 211 -199 3 1006 279 0 0 0 chr6 55257009 55257040 -94259997 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1006 777 171 83 79 chr6 55257040 55257081 -94259956 + RMER17C LTR ERVK 212 255 -155 3 1006 693 115 392 28 chr6 55257088 55257302 -94259735 - RMER17C LTR ERVK -81 329 38 3 1006 201 39 0 0 chr6 55257950 55257976 -94259061 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1006 3595 13 5 0 chr6 55258573 55258967 -94258070 - MTA_Mm LTR MaLR 0 396 1 3 1006 189 253 169 0 chr6 55260009 55260092 -94256945 + MIR SINE MIR 50 146 -62 3 1006 27 0 0 0 chr6 55260801 55260828 -94256209 + GC_rich Low_complexity Low_complexity 1 27 0 3 1006 192 342 38 0 chr6 55261426 55261505 -94255532 - MER5A DNA MER1_type -106 83 2 3 1006 289 269 21 11 chr6 55261710 55261727 -94255310 - B4A SINE B4 -197 95 1 3 1006 297 286 0 0 chr6 55261727 55261804 -94255233 - B3A SINE B2 -121 77 1 3 1006 457 276 145 26 chr6 55266605 55266832 -94250205 - MER2 DNA MER2_type 0 345 92 3 1006 468 328 109 62 chr6 55266924 55267262 -94249775 - ORR1E LTR MaLR -2 357 4 3 1006 5225 206 48 67 chr6 55270585 55272082 -94244955 - RMER1A Other Other -14 1016 1 3 1006 1090 127 0 0 chr6 55272178 55272328 -94244709 - B1_Mur4 SINE Alu 0 150 1 3 1006 183 274 20 0 chr6 55272608 55272659 -94244378 + L2b LINE L2 3313 3364 -11 3 1006 207 0 0 0 chr6 55274170 55274193 -94242844 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1006 464 252 16 48 chr6 55275689 55275814 -94241223 + ID_B1 SINE B4 103 223 -1 3 1006 200 330 157 0 chr6 55275831 55275946 -94241091 + MIR SINE MIR 113 245 -17 3 1006 385 354 51 0 chr6 55278041 55278199 -94238838 + MER5A1 DNA MER1_type 1 166 0 3 1006 264 358 41 51 chr6 55280245 55280442 -94236595 + RMER12 LTR ERVK 727 921 -401 3 1006 432 0 0 0 chr6 55284284 55284332 -94232705 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1006 207 191 24 0 chr6 55286230 55286272 -94230765 + GA-rich Low_complexity Low_complexity 2 44 0 3 1006 360 0 0 0 chr6 55290061 55290101 -94226936 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1006 244 351 29 58 chr6 55291952 55292194 -94224843 - L1M5 LINE L1 -3423 2723 2489 3 1006 259 185 37 0 chr6 55294204 55294258 -94222779 - MIRm SINE MIR -104 172 117 3 1006 183 80 0 0 chr6 55298370 55298395 -94218642 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 3 1006 227 392 42 0 chr6 55299677 55299820 -94217217 - MIRb SINE MIR -104 164 16 3 1006 645 14 0 0 chr6 55300323 55300397 -94216640 + (GGATG)n Simple_repeat Simple_repeat 4 77 0 3 1006 477 0 0 0 chr6 55301014 55301067 -94215970 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1006 252 0 0 0 chr6 55301071 55301099 -94215938 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1006 259 205 85 15 chr6 55301119 55301201 -94215836 - RSINE1 SINE B4 -22 143 78 3 1006 290 232 11 68 chr6 55301344 55301432 -94215605 - B4 SINE B4 -206 86 4 3 1006 489 273 169 6 chr6 55302293 55302459 -94214578 - ID_B1 SINE B4 -31 193 1 3 1006 237 196 0 0 chr6 55303260 55303316 -94213721 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1006 342 0 0 0 chr6 55306700 55306738 -94210299 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1006 36 40 0 0 chr6 55306834 55306884 -94210153 + AT_rich Low_complexity Low_complexity 1 50 0 3 1006 280 253 147 0 chr6 55306967 55307062 -94209975 + MIR SINE MIR 36 144 -118 4 1006 674 147 28 49 chr6 55308400 55308543 -94208494 - URR1A DNA MER1_type -8 218 79 4 1006 207 0 0 0 chr6 55309082 55309105 -94207932 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1006 312 308 134 40 chr6 55309496 55310073 -94206964 - L1M5 LINE L1 -273 5891 5270 4 1006 393 334 163 42 chr6 55310462 55311499 -94205538 - L1MC4a LINE L1 -551 7331 6169 4 1006 356 335 160 31 chr6 55311566 55311954 -94205083 - L1ME1 LINE L1 -161 6018 5581 4 1007 986 157 141 0 chr6 55313230 55313428 -94203609 + URR1A DNA MER1_type 1 226 0 4 1007 231 268 52 52 chr6 55313438 55313572 -94203465 - L1ME1 LINE L1 -869 5575 5442 4 1007 407 309 60 37 chr6 55313574 55313619 -94203418 - L1ME1 LINE L1 -705 5474 5426 4 1007 2496 70 0 0 chr6 55313619 55313947 -94203090 - L1_Mus1 LINE L1 0 6567 6240 4 1007 407 314 65 65 chr6 55313947 55314379 -94202658 - L1ME1 LINE L1 -754 5425 4999 4 1007 5949 141 7 35 chr6 55314381 55314690 -94202347 - L1_Mur2 LINE L1 -3542 2335 2048 4 1007 660 26 0 0 chr6 55314690 55314768 -94202269 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 1007 5949 146 52 29 chr6 55314768 55315917 -94201120 - L1_Mur2 LINE L1 -3830 2047 834 4 1007 348 289 211 0 chr6 55316032 55316198 -94200839 - L1ME1 LINE L1 -1208 4938 4738 4 1007 3997 253 82 44 chr6 55316707 55316849 -94200188 - Lx8 LINE L1 0 7473 7351 4 1007 1325 73 17 0 chr6 55316849 55317027 -94200010 - B2_Mm2 SINE B2 -14 181 1 4 1007 3997 277 87 59 chr6 55317027 55318726 -94198311 - Lx8 LINE L1 -292 7352 5810 4 1007 1641 208 65 0 chr6 55318726 55319077 -94197960 - ORR1D1 LTR MaLR 0 374 1 4 1007 1109 220 98 72 chr6 55319077 55319409 -94197628 - Lx8 LINE L1 -73 5810 5439 4 1007 250 254 15 0 chr6 55319412 55319479 -94197558 - L1MEc LINE L1 -1848 4471 4404 4 1007 250 298 103 38 chr6 55319750 55319935 -94197102 + Lx9 LINE L1 7299 7495 -149 4 1007 254 329 0 0 chr6 55320006 55320082 -94196955 - RMER15 LTR ERVL -202 373 298 4 1007 1745 268 87 14 chr6 55320767 55321282 -94195755 - RMER15-int LTR ERVL -3869 1130 578 4 1007 2106 118 75 6 chr6 55321296 55321655 -94195382 - ORR1C2 LTR MaLR 0 384 1 4 1007 220 252 44 132 chr6 55322383 55322497 -94194540 - B1F SINE Alu -26 123 20 4 1007 227 263 0 34 chr6 55322556 55322615 -94194422 - L1MEc LINE L1 -6303 97 41 4 1007 958 111 0 104 chr6 55322636 55322670 -94194367 - B2_Mm2 SINE B2 -23 172 146 4 1007 429 20 0 0 chr6 55322670 55322720 -94194317 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1007 958 111 0 104 chr6 55322720 55322877 -94194160 - B2_Mm2 SINE B2 -50 145 1 4 1007 516 320 32 0 chr6 55323036 55323192 -94193845 - RSINE1 SINE B4 -2 163 3 4 1007 2106 191 42 0 chr6 55324171 55324575 -94192462 + MTC LTR MaLR 1 421 0 4 1007 198 0 0 0 chr6 55325695 55325717 -94191320 + (ACTG)n Simple_repeat Simple_repeat 1 22 0 4 1007 315 279 0 12 chr6 55325717 55325797 -94191240 - ID4 SINE ID -3 80 2 4 1007 231 277 0 71 chr6 55326991 55327061 -94189976 + B1F SINE Alu 55 119 -30 4 1007 279 0 0 0 chr6 55327291 55327322 -94189715 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1007 948 114 0 0 chr6 55327322 55327497 -94189540 + (GA)n Simple_repeat Simple_repeat 1 176 0 4 1007 397 288 236 0 chr6 55328120 55328370 -94188667 - MLT1D LTR MaLR -194 311 3 4 1007 223 164 47 28 chr6 55328553 55328660 -94188377 + CT-rich Low_complexity Low_complexity 2 110 0 4 1007 281 316 152 17 chr6 55332468 55332645 -94184392 - MIR SINE MIR -2 260 60 4 1007 222 37 0 0 chr6 55332823 55332850 -94184187 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1007 954 26 0 0 chr6 55332850 55332962 -94184075 + (GA)n Simple_repeat Simple_repeat 1 113 0 4 1007 189 0 0 0 chr6 55333821 55333842 -94183195 + (AGGGGG)n Simple_repeat Simple_repeat 5 25 0 4 1007 641 92 0 10 chr6 55334827 55334926 -94182111 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 1007 237 333 103 41 chr6 55335035 55335229 -94181808 - L2c LINE L2 -56 3331 3126 4 1007 206 386 7 7 chr6 55335596 55335737 -94181300 + (TCTA)n Simple_repeat Simple_repeat 3 143 0 4 1007 376 281 48 0 chr6 55335693 55335839 -94181198 + (TCCA)n Simple_repeat Simple_repeat 2 154 0 4 1007 228 289 26 26 chr6 55335799 55335916 -94181121 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 4 1007 236 276 38 9 chr6 55335875 55335981 -94181056 + (TCCA)n Simple_repeat Simple_repeat 3 111 0 4 1007 621 194 0 0 chr6 55336007 55336162 -94180875 + (TCCA)n Simple_repeat Simple_repeat 4 158 0 4 1007 265 344 0 0 chr6 55336179 55336272 -94180765 + (TCCA)n Simple_repeat Simple_repeat 3 95 0 4 1007 458 61 15 0 chr6 55336280 55336346 -94180691 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 4 1007 405 349 6 12 chr6 55336356 55336477 -94180560 + (TCCA)n Simple_repeat Simple_repeat 1 121 0 4 1007 189 74 0 0 chr6 55336477 55336504 -94180533 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 4 1007 405 349 6 12 chr6 55336504 55336550 -94180487 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 4 1007 408 40 0 0 chr6 55337545 55337595 -94179442 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 4 1007 234 304 34 17 chr6 55338784 55338901 -94178136 - L1M5 LINE L1 -267 5927 5809 4 1007 682 321 53 84 chr6 55339350 55339707 -94177330 - ORR1E LTR MaLR -5 354 9 4 1007 773 251 64 35 chr6 55340627 55340970 -94176067 + L1MB7 LINE L1 5353 5705 -473 4 1007 460 203 181 30 chr6 55341095 55341315 -94175722 + L1MB7 LINE L1 5915 6175 -9 4 1007 232 343 47 67 chr6 55341332 55341482 -94175555 + RSINE1 SINE B4 3 149 -16 4 1007 368 181 0 12 chr6 55341629 55341713 -94175324 + CT-rich Low_complexity Low_complexity 2 84 0 4 1007 327 49 0 0 chr6 55341786 55341827 -94175210 + (TGGGGG)n Simple_repeat Simple_repeat 5 45 0 4 1007 291 225 0 0 chr6 55342813 55342884 -94174153 + GA-rich Low_complexity Low_complexity 1 71 0 4 1007 278 132 0 19 chr6 55343061 55343115 -94173922 + GA-rich Low_complexity Low_complexity 4 56 0 4 1007 287 322 213 17 chr6 55343727 55343901 -94173136 - L2b LINE L2 -184 3191 2984 4 1007 2088 123 8 79 chr6 55344197 55344551 -94172486 - ORR1A4 LTR MaLR 0 329 1 4 1007 255 351 82 18 chr6 55344891 55345172 -94171865 - L2b LINE L2 -1232 2187 1889 4 1007 364 254 126 47 chr6 55348120 55348305 -94168732 - MLT1A1 LTR MaLR -12 396 171 4 1007 197 311 107 0 chr6 55350126 55350229 -94166808 - MIR SINE MIR -33 229 116 4 1007 419 238 0 0 chr6 55350531 55350611 -94166426 - B3A SINE B2 -118 80 1 4 1007 243 255 20 0 chr6 55350653 55350704 -94166333 - MIRm SINE MIR -125 151 100 4 1007 203 318 348 3 chr6 55351451 55351773 -94165264 + L2a LINE L2 2945 3377 -49 4 1007 189 0 0 0 chr6 55352082 55352103 -94164934 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1007 1260 79 62 0 chr6 55352833 55353010 -94164027 - B2_Mm2 SINE B2 -6 189 2 4 1007 231 78 39 19 chr6 55353147 55353199 -94163838 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 4 1007 182 289 78 78 chr6 55353461 55353551 -94163486 - L2a LINE L2 -2 3424 3335 4 1007 245 308 24 49 chr6 55354315 55354397 -94162640 - ID2 SINE ID -1 82 3 4 1007 776 287 67 7 chr6 55354402 55354686 -94162351 + MLT1B LTR MaLR 87 387 -3 4 1007 600 84 0 0 chr6 55355729 55355812 -94161225 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1007 1375 116 92 0 chr6 55355872 55356079 -94160958 - Lx4A LINE L1 -3 7055 6830 4 1007 518 316 42 0 chr6 55356370 55356563 -94160474 + MER2 DNA MER2_type 145 345 0 4 1007 419 184 65 65 chr6 55356660 55356753 -94160284 + B1_Mus2 SINE Alu 1 93 -54 4 1007 734 34 0 0 chr6 55356831 55356919 -94160118 + B1_Mus2 SINE Alu 58 145 -2 4 1007 984 125 0 0 chr6 55356919 55357079 -94159958 + (TA)n Simple_repeat Simple_repeat 2 161 0 4 1007 21 0 0 0 chr6 55358219 55358240 -94158797 + GC_rich Low_complexity Low_complexity 1 21 0 4 1007 449 317 86 34 chr6 55360088 55360297 -94156740 + MIR SINE MIR 44 263 -13 4 1007 332 261 85 70 chr6 55360826 55361037 -94156000 - MER44A DNA MER2_type -112 227 53 4 1007 341 328 65 30 chr6 55361066 55361331 -94155706 - Tigger7 DNA MER2_type -2186 305 1 4 1007 285 151 0 0 chr6 55362112 55362165 -94154872 + (TTCA)n Simple_repeat Simple_repeat 3 55 0 4 1007 393 373 51 47 chr6 55362448 55362701 -94154336 - HAL1 LINE L1 -623 1884 1631 4 1007 245 215 196 41 chr6 55362775 55362872 -94154165 - PB1D7 SINE Alu -8 112 1 4 1007 426 325 98 53 chr6 55362993 55363350 -94153687 - HAL1 LINE L1 -1133 1374 1002 4 1007 288 0 0 0 chr6 55363350 55363382 -94153655 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1007 261 0 0 0 chr6 55363382 55363411 -94153626 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 4 1007 412 191 8 108 chr6 55363411 55363540 -94153497 + Lx8 LINE L1 5441 5582 -304 4 1007 3029 281 83 33 chr6 55363559 55363686 -94153351 + Lx8 LINE L1 6230 6354 -1119 4 1007 1190 254 45 98 chr6 55363686 55364248 -94152789 + MT2A LTR ERVL 1 532 -1 4 1007 3029 281 83 33 chr6 55364248 55365250 -94151787 + Lx8 LINE L1 6355 7416 -57 4 1007 183 129 0 0 chr6 55365285 55365316 -94151721 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1007 302 243 63 36 chr6 55365393 55365504 -94151533 + ID_B1 SINE B4 79 192 -32 4 1007 232 172 49 49 chr6 55365490 55365551 -94151486 - MTEb LTR MaLR -41 338 278 4 1007 304 327 36 71 chr6 55365746 55365914 -94151123 - MLT1A1 LTR MaLR -244 164 3 4 1007 576 333 89 53 chr6 55366075 55366892 -94150145 - HAL1 LINE L1 -689 1818 972 4 1007 1537 191 61 67 chr6 55367126 55367290 -94149747 + ORR1D1 LTR MaLR 1 165 -209 4 1007 332 41 41 0 chr6 55367290 55367339 -94149698 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 4 1007 1537 191 61 67 chr6 55367339 55367550 -94149487 + ORR1D1 LTR MaLR 166 374 0 4 1007 29 60 0 0 chr6 55368555 55368605 -94148432 + AT_rich Low_complexity Low_complexity 1 50 0 4 1007 182 333 125 25 chr6 55369244 55369364 -94147673 + MIRb SINE MIR 105 236 -32 4 1007 204 64 64 0 chr6 55372200 55372247 -94144790 + (GGGGA)n Simple_repeat Simple_repeat 1 50 0 4 1007 247 308 48 39 chr6 55372604 55372737 -94144300 + MIRb SINE MIR 94 237 -25 4 1007 217 261 31 0 chr6 55372977 55373042 -94143995 - MIRm SINE MIR -126 150 84 4 1007 564 260 128 37 chr6 55374143 55374331 -94142706 - MTE2b LTR MaLR -7 372 168 4 1007 631 303 74 42 chr6 55374384 55374667 -94142370 - B4A SINE B4 0 292 1 4 1007 1548 222 77 34 chr6 55374714 55375064 -94141973 - ORR1D2 LTR MaLR -5 365 1 4 1007 441 207 28 49 chr6 55375064 55375204 -94141833 - MTE2b LTR MaLR -239 140 15 4 1007 2170 263 124 30 chr6 55375217 55375949 -94141088 - MTE-int LTR MaLR -5 1575 775 4 1007 374 284 57 43 chr6 55375950 55376090 -94140947 - RMER15 LTR ERVL -338 237 96 4 1007 384 286 70 90 chr6 55376271 55376471 -94140566 - B3A SINE B2 0 198 3 4 1007 397 324 128 19 chr6 55376472 55376683 -94140354 - MTE-int LTR MaLR -903 677 444 4 1007 1210 278 200 30 chr6 55376685 55377095 -94139942 + RMER15 LTR ERVL 96 575 0 4 1007 364 255 10 48 chr6 55377212 55377315 -94139722 - L1MCa LINE L1 -4550 1958 1860 5 1007 306 293 0 0 chr6 55377393 55377516 -94139521 + A-rich Low_complexity Low_complexity 1 123 0 5 1007 3118 23 0 0 chr6 55377544 55377890 -94139147 - ORR1A0 LTR MaLR 0 346 1 5 1007 14374 48 8 2 chr6 55377890 55379671 -94137366 - ORR1A0-int LTR MaLR 0 1792 1 5 1007 3137 17 0 3 chr6 55379671 55380018 -94137019 - ORR1A0 LTR MaLR 0 346 1 5 1007 3220 291 82 15 chr6 55380109 55381373 -94135664 - Lx7 LINE L1 -502 7194 5847 5 1007 2123 168 101 5 chr6 55382426 55382803 -94134234 - MTC LTR MaLR -8 413 1 5 1007 208 274 146 0 chr6 55383362 55383477 -94133560 + MIR SINE MIR 59 188 -74 5 1007 837 283 71 4 chr6 55387634 55387914 -94129123 + MER33 DNA MER1_type 6 304 -20 5 1007 435 337 79 0 chr6 55387959 55388137 -94128900 - MIR SINE MIR -10 252 61 5 1007 345 284 21 0 chr6 55391072 55391167 -94125870 + MER5B DNA MER1_type 2 98 -80 5 1007 522 0 0 0 chr6 55391373 55391431 -94125606 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1007 467 286 4 135 chr6 55392756 55392986 -94124051 + MTEb LTR MaLR 1 200 -179 5 1007 213 214 24 0 chr6 55393000 55393042 -94123995 + C-rich Low_complexity Low_complexity 4 46 0 5 1007 531 0 0 0 chr6 55395221 55395280 -94121757 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 5 1007 221 258 32 21 chr6 55395323 55395418 -94121619 + (CAAA)n Simple_repeat Simple_repeat 2 97 0 5 1007 708 54 0 0 chr6 55395475 55395568 -94121469 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 1007 617 334 87 31 chr6 55396725 55397282 -94119755 + MLT1E LTR MaLR 1 653 -1 5 1007 693 66 0 0 chr6 55398022 55398113 -94118924 + (GA)n Simple_repeat Simple_repeat 1 91 0 5 1007 360 292 32 58 chr6 55399133 55399289 -94117748 - MER5B DNA MER1_type -12 166 15 5 1007 237 248 138 37 chr6 55400501 55400610 -94116427 - MIRc SINE MIR -36 232 113 5 1007 180 0 0 0 chr6 55403959 55403979 -94113058 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 5 1007 531 0 0 0 chr6 55404079 55404138 -94112899 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1007 396 0 0 0 chr6 55404925 55404969 -94112068 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1007 345 324 97 0 chr6 55406955 55407169 -94109868 + MIR SINE MIR 8 241 -21 5 1007 612 0 0 0 chr6 55408216 55408284 -94108753 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1007 256 307 54 74 chr6 55411079 55411227 -94105810 + MIR SINE MIR 35 179 -83 5 1007 195 364 40 5 chr6 55413102 55413222 -94103815 - MIRc SINE MIR -86 182 59 5 1007 247 278 130 14 chr6 55416023 55416169 -94100868 - MER5A DNA MER1_type -26 163 1 5 1007 212 0 36 0 chr6 55416201 55416229 -94100808 + (AGGGGG)n Simple_repeat Simple_repeat 6 34 0 5 1007 354 195 0 0 chr6 55417173 55417255 -94099782 + (TCCA)n Simple_repeat Simple_repeat 4 85 0 5 1007 324 0 0 0 chr6 55417397 55417433 -94099604 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1007 195 289 78 0 chr6 55417769 55417859 -94099178 + L2 LINE L2 2665 2761 -658 5 1007 225 0 0 0 chr6 55417891 55417916 -94099121 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 5 1007 671 325 53 0 chr6 55418146 55418352 -94098685 + MLT1D LTR MaLR 250 466 -39 5 1007 210 254 17 17 chr6 55418499 55418559 -94098478 + GA-rich Low_complexity Low_complexity 2 61 0 5 1007 222 349 0 0 chr6 55420921 55421004 -94096033 - L2 LINE L2 -1379 2040 1958 5 1007 279 0 0 0 chr6 55421658 55421689 -94095348 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1007 368 264 121 36 chr6 55421716 55421881 -94095156 - MTEa LTR MaLR -32 347 169 5 1007 458 17 17 0 chr6 55422050 55422109 -94094928 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1007 183 407 0 56 chr6 55422642 55422785 -94094252 + MIRb SINE MIR 126 260 -8 5 1007 207 88 0 0 chr6 55422879 55422913 -94094124 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1007 1207 62 0 0 chr6 55422915 55423060 -94093977 - B1_Mm SINE Alu 0 147 3 5 1007 317 89 0 0 chr6 55423072 55423117 -94093920 - ORR1B2 LTR MaLR -1 366 322 5 1007 253 235 65 6 chr6 55424958 55425050 -94091987 - L2b LINE L2 -223 3164 3062 5 1007 821 138 92 0 chr6 55426743 55426873 -94090164 + B1_Mus1 SINE Alu 1 142 -6 5 1007 300 346 56 12 chr6 55428317 55428478 -94088559 - MamRep38 DNA hAT -92 203 36 5 1007 375 365 60 92 chr6 55431233 55431580 -94085457 - L1MC LINE L1 -341 5821 5486 5 1007 240 333 0 9 chr6 55432536 55432648 -94084389 - L1MC LINE L1 -1887 4259 4149 5 1007 288 0 0 0 chr6 55433358 55433390 -94083647 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1007 224 286 139 28 chr6 55433442 55433550 -94083487 - PB1D9 SINE Alu 0 120 1 5 1007 377 286 57 70 chr6 55433550 55433626 -94083411 - B4 SINE B4 -205 87 14 5 1007 464 259 0 0 chr6 55434553 55434661 -94082376 - PB1D10 SINE Alu -7 110 3 5 1007 186 133 0 0 chr6 55436256 55436286 -94080751 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1007 330 26 0 0 chr6 55438362 55438401 -94078636 + (TAA)n Simple_repeat Simple_repeat 1 39 0 5 1007 678 13 0 0 chr6 55439544 55439623 -94077414 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 1007 564 289 80 0 chr6 55440412 55440599 -94076438 + MER3 DNA MER1_type 2 203 -6 5 1007 258 95 0 0 chr6 55440943 55440985 -94076052 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1007 275 365 8 33 chr6 55441682 55441804 -94075233 - MIR SINE MIR -44 218 100 5 1007 212 238 0 60 chr6 55442906 55442973 -94074064 + CT-rich Low_complexity Low_complexity 4 66 0 5 1008 459 52 0 0 chr6 55449112 55449170 -94067867 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1008 1953 178 74 5 chr6 55453041 55453408 -94063629 - ORR1B1 LTR MaLR -2 392 1 5 1008 334 316 37 15 chr6 55453623 55453758 -94063279 - RMER10B LTR ERVL -63 335 198 5 1008 417 135 0 0 chr6 55453773 55453862 -94063175 + (GA)n Simple_repeat Simple_repeat 1 89 0 5 1008 232 275 0 28 chr6 55454245 55454306 -94062731 - MLT1J LTR MaLR -334 178 119 5 1008 2405 136 24 26 chr6 55454306 55454685 -94062352 - ORR1C1 LTR MaLR 0 378 1 5 1008 754 309 67 49 chr6 55455903 55456352 -94060685 - MLT1C LTR MaLR 0 467 11 5 1008 992 256 9 22 chr6 55456414 55456646 -94060391 - MTD LTR MaLR -117 302 74 5 1008 1153 251 84 25 chr6 55457680 55458039 -94058998 - MTD LTR MaLR -39 380 1 5 1008 1351 244 28 44 chr6 55458936 55459566 -94057471 - RLTR18B LTR ERVK 0 512 61 5 1008 1961 214 44 31 chr6 55459899 55460377 -94056660 + RMER20A LTR ERVK 11 494 -22 5 1008 804 210 35 39 chr6 55462773 55463056 -94053981 - Lx7 LINE L1 -96 7600 7319 5 1008 2776 192 69 32 chr6 55463138 55463793 -94053244 - Lx7 LINE L1 -325 7371 6693 5 1008 459 219 106 0 chr6 55464163 55464286 -94052751 + ORR1D1 LTR MaLR 1 136 -238 5 1008 243 274 52 75 chr6 55464269 55464287 -94052750 - MT2B2 LTR ERVL -33 442 425 5 1008 411 21 0 0 chr6 55464287 55464335 -94052702 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1008 669 245 47 70 chr6 55464335 55464606 -94052431 - MT2B2 LTR ERVL -61 523 274 5 1008 1430 249 65 106 chr6 55464616 55465230 -94051807 - L1_Mur3 LINE L1 -318 5562 4953 5 1008 227 305 45 54 chr6 55465415 55465526 -94051511 - MLT1A1 LTR MaLR -242 166 57 5 1008 3537 258 58 40 chr6 55465599 55466082 -94050955 - Lx8 LINE L1 -2 7471 6953 5 1008 369 109 0 0 chr6 55466082 55466137 -94050900 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1008 3537 258 58 40 chr6 55466137 55466766 -94050271 - Lx8 LINE L1 -521 6952 6339 5 1008 607 269 64 13 chr6 55466765 55467030 -94050007 + Lx9 LINE L1 5697 5976 -1668 5 1008 5566 3 0 0 chr6 55467053 55467657 -94049380 - L1Md_A LINE L1 0 6582 5979 5 1008 226 255 160 0 chr6 55467767 55467861 -94049176 - L1MC LINE L1 -893 5253 5145 5 1008 594 286 7 0 chr6 55468485 55468639 -94048398 + RSINE1 SINE B4 11 165 0 5 1008 339 323 13 25 chr6 55468822 55468981 -94048056 - MLT1H LTR MaLR 0 549 393 5 1008 333 0 0 0 chr6 55470154 55470191 -94046846 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1008 1317 13 0 0 chr6 55470191 55470341 -94046696 + (GA)n Simple_repeat Simple_repeat 1 151 0 5 1008 22 0 0 0 chr6 55470621 55470643 -94046394 + GC_rich Low_complexity Low_complexity 1 22 0 5 1008 350 326 156 6 chr6 55470868 55471047 -94045990 + MER20 DNA MER1_type 3 208 -11 5 1008 25 0 0 0 chr6 55471337 55471362 -94045675 + AT_rich Low_complexity Low_complexity 1 25 0 5 1008 460 283 92 0 chr6 55471618 55471770 -94045267 - Lx6 LINE L1 -1395 6065 5900 5 1008 1038 8 15 0 chr6 55471784 55471915 -94045122 - B1_Mm SINE Alu -5 142 10 5 1008 246 308 75 0 chr6 55472551 55472658 -94044379 + MER57F LTR ERV1 148 262 -174 5 1008 216 321 0 0 chr6 55472683 55472739 -94044298 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1008 1776 255 69 17 chr6 55472754 55473273 -94043764 - Lx6 LINE L1 -895 4985 4440 5 1008 9082 138 11 7 chr6 55473271 55475117 -94041920 - Lx2 LINE L1 -1 6996 5137 5 1008 219 224 0 0 chr6 55475425 55475474 -94041563 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1008 458 298 128 11 chr6 55475487 55475667 -94041370 - B4A SINE B4 -2 290 90 5 1008 229 311 56 86 chr6 55475765 55475962 -94041075 - L1MEg LINE L1 -5575 509 319 5 1008 300 91 0 0 chr6 55476241 55476285 -94040752 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 1008 562 259 6 47 chr6 55476410 55476580 -94040457 - RSINE1 SINE B4 0 165 3 5 1008 737 245 25 0 chr6 55476685 55476844 -94040193 + RMER19B LTR ERVK 123 285 -617 5 1008 508 249 73 11 chr6 55476988 55477167 -94039870 + L1MC4a LINE L1 5706 5895 -1987 5 1008 3598 186 79 62 chr6 55477423 55478275 -94038762 + RMER19B LTR ERVK 1 866 -36 5 1008 1249 34 0 0 chr6 55478275 55478421 -94038616 + B1_Mus1 SINE Alu 3 148 0 6 1008 189 0 0 0 chr6 55478421 55478442 -94038595 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1008 220 270 0 60 chr6 55478508 55478575 -94038462 + ID4_ SINE ID 1 63 -20 6 1008 23 54 0 0 chr6 55478698 55478735 -94038302 + AT_rich Low_complexity Low_complexity 1 37 0 6 1008 230 333 12 12 chr6 55478764 55478849 -94038188 - ORR1D2 LTR MaLR -7 363 279 6 1008 2978 196 80 19 chr6 55479282 55479908 -94037129 - Lx5 LINE L1 0 7050 6387 6 1008 1202 152 36 18 chr6 55479919 55480140 -94036897 - URR1B DNA MER1_type 0 225 1 6 1008 254 280 191 81 chr6 55481038 55481248 -94035789 - MLT1B LTR MaLR -4 386 154 6 1008 236 134 76 95 chr6 55481787 55481866 -94035171 + B3A SINE B2 16 83 -112 6 1008 625 103 18 18 chr6 55481872 55481981 -94035056 + ORR1B1 LTR MaLR 41 149 -245 6 1008 205 178 0 0 chr6 55482079 55482124 -94034913 + A-rich Low_complexity Low_complexity 2 46 0 6 1008 243 0 0 0 chr6 55482128 55482155 -94034882 + (CAAAC)n Simple_repeat Simple_repeat 3 29 0 6 1008 1192 226 52 14 chr6 55482164 55482510 -94034527 + L1_Mur3 LINE L1 4625 4983 -897 6 1008 1982 228 35 137 chr6 55482515 55483161 -94033876 + RMER19C LTR ERVK 1 582 -29 6 1008 1961 82 49 21 chr6 55483161 55483447 -94033590 + L1Md_F2 LINE L1 6289 6582 0 6 1008 1982 228 35 137 chr6 55483447 55483480 -94033557 + RMER19C LTR ERVK 583 611 0 6 1008 299 0 0 0 chr6 55483518 55483554 -94033483 + U2 snRNA snRNA 1 36 -152 6 1008 268 241 0 0 chr6 55483554 55483612 -94033425 + L1_Mur3 LINE L1 5008 5065 -815 6 1008 794 264 60 0 chr6 55484374 55484575 -94032462 - B3 SINE B2 -3 213 1 6 1008 297 281 24 12 chr6 55484678 55484772 -94032265 - B1F SINE Alu -16 134 39 6 1008 278 87 22 0 chr6 55485898 55485944 -94031093 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1008 558 0 0 0 chr6 55486284 55486346 -94030691 + (GAA)n Simple_repeat Simple_repeat 2 63 0 6 1008 393 39 0 0 chr6 55486346 55486397 -94030640 + (CAA)n Simple_repeat Simple_repeat 1 51 0 6 1008 195 42 0 0 chr6 55487223 55487247 -94029790 + (TTTTTA)n Simple_repeat Simple_repeat 5 28 0 6 1008 973 232 19 0 chr6 55487317 55487524 -94029513 - B3 SINE B2 -1 215 5 6 1008 843 109 0 0 chr6 55488316 55488472 -94028565 + (GA)n Simple_repeat Simple_repeat 1 156 0 6 1008 261 83 0 0 chr6 55488521 55488557 -94028480 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 6 1008 204 179 0 0 chr6 55489772 55489811 -94027226 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1008 345 125 0 0 chr6 55489831 55489887 -94027150 + (GGA)n Simple_repeat Simple_repeat 2 57 0 6 1008 324 0 0 0 chr6 55490029 55490065 -94026972 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1008 279 355 129 27 chr6 55490687 55491277 -94025760 - L2 LINE L2 -625 2794 2145 6 1008 213 328 0 0 chr6 55491659 55491723 -94025314 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1008 245 282 38 114 chr6 55491869 55492001 -94025036 - ID_B1 SINE B4 0 224 103 6 1008 203 238 0 0 chr6 55492008 55492050 -94024987 + GA-rich Low_complexity Low_complexity 3 44 0 6 1008 338 357 73 32 chr6 55495296 55495542 -94021495 - MLT1A LTR MaLR -71 303 48 6 1008 438 53 0 0 chr6 55495552 55495609 -94021428 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1008 1122 307 71 72 chr6 55495609 55495832 -94021205 + L1_Rod LINE L1 4825 5040 -807 6 1008 1065 123 0 0 chr6 55495832 55496009 -94021028 + (CCAA)n Simple_repeat Simple_repeat 1 183 -53 6 1008 1065 123 0 0 chr6 55496018 55496068 -94020969 + (CCAA)n Simple_repeat Simple_repeat 184 236 0 6 1008 1122 311 68 68 chr6 55496068 55496632 -94020405 + L1_Rod LINE L1 5041 5689 -551 6 1008 228 67 0 0 chr6 55496773 55496803 -94020234 + (CATA)n Simple_repeat Simple_repeat 3 32 0 6 1008 3274 155 36 14 chr6 55497131 55497706 -94019331 - Lx2B LINE L1 0 7000 6413 6 1008 290 232 60 12 chr6 55498108 55498191 -94018846 + MLT2B2 LTR ERVL 1 87 -467 6 1008 281 265 27 81 chr6 55498191 55498219 -94018818 + MTEa LTR MaLR 1 105 -274 6 1008 793 347 53 38 chr6 55499569 55499964 -94017073 + MLT2B2 LTR ERVL 108 508 -7 6 1008 184 286 34 45 chr6 55500080 55500168 -94016869 - MIRb SINE MIR -16 252 166 1 1008 212 279 101 27 chr6 55500510 55500658 -94016379 + MIRm SINE MIR 55 252 -10 2 1008 822 293 73 30 chr6 55501659 55502098 -94014939 - MER31A LTR ERV1 0 485 28 3 1008 317 24 0 23 chr6 55502395 55502438 -94014599 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 4 1008 378 0 0 0 chr6 55503373 55503415 -94013622 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 5 1008 1279 41 0 20 chr6 55503573 55503721 -94013316 - B1_Mus2 SINE Alu 0 147 3 6 1008 378 119 0 0 chr6 55503742 55503801 -94013236 - B1_Mus2 SINE Alu 0 147 89 7 1008 207 279 0 32 chr6 55503879 55503942 -94013095 + MIRm SINE MIR 208 268 -8 8 1008 2146 93 73 27 chr6 55504045 55504375 -94012662 + Lx3C LINE L1 6630 6974 -2 9 1008 180 0 0 0 chr6 55504398 55504418 -94012619 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1008 249 381 45 13 chr6 55504450 55504607 -94012430 - L3 LINE CR1 -1007 3482 3321 1 1008 635 237 0 0 chr6 55505826 55505944 -94011093 + B2_Mm2 SINE B2 2 119 -76 1 1008 423 0 0 0 chr6 55505969 55506016 -94011021 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1008 250 252 44 124 chr6 55506089 55506202 -94010835 - ORR1E LTR MaLR -237 122 19 1 1008 367 365 70 60 chr6 55506293 55506663 -94010374 + MLT1I LTR MaLR 38 411 0 1 1008 625 266 83 21 chr6 55506831 55507097 -94009940 + B4 SINE B4 6 290 -2 1 1008 794 20 20 0 chr6 55507266 55507365 -94009672 + (TTTC)n Simple_repeat Simple_repeat 1 101 0 1 1008 254 380 100 40 chr6 55508710 55508910 -94008127 - LTR33 LTR ERVL -215 300 89 1 1008 220 206 0 52 chr6 55511799 55511876 -94005161 + CT-rich Low_complexity Low_complexity 3 75 0 1 1008 404 304 122 19 chr6 55512204 55512409 -94004628 + L1MB7 LINE L1 5742 5967 -217 2 1008 1141 151 15 20 chr6 55512418 55512671 -94004366 + ORR1A2 LTR MaLR 1 318 -8 2 1008 243 290 118 37 chr6 55512680 55512841 -94004196 + L1MB7 LINE L1 5985 6158 -16 2 1008 313 325 63 117 chr6 55513172 55513506 -94003531 + ORR1E LTR MaLR 3 318 -41 2 1008 738 53 0 0 chr6 55513534 55513629 -94003408 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 1008 599 286 7 29 chr6 55513631 55513768 -94003269 - RSINE1 SINE B4 -29 136 3 2 1008 34 55 0 0 chr6 55513990 55514045 -94002992 + AT_rich Low_complexity Low_complexity 1 55 0 2 1008 278 305 0 0 chr6 55514449 55514531 -94002506 + L1_Mur3 LINE L1 5332 5413 -467 2 1008 447 141 0 0 chr6 55515038 55515116 -94001921 + (GA)n Simple_repeat Simple_repeat 2 79 0 2 1008 589 298 18 12 chr6 55516222 55516385 -94000652 + ID_B1 SINE B4 60 223 -1 2 1008 413 286 137 5 chr6 55516360 55516550 -94000487 - MER2 DNA MER2_type -34 311 97 2 1008 396 0 0 0 chr6 55516610 55516654 -94000383 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1008 26 0 0 0 chr6 55516768 55516794 -94000243 + AT_rich Low_complexity Low_complexity 1 26 0 3 1008 22 0 0 0 chr6 55516869 55516891 -94000146 + AT_rich Low_complexity Low_complexity 1 22 0 3 1008 506 290 69 107 chr6 55517715 55518005 -93999032 - ORR1E LTR MaLR -72 287 9 3 1008 747 224 0 0 chr6 55518015 55518194 -93998843 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1008 670 200 285 5 chr6 55521205 55521455 -93995582 + MTD LTR MaLR 102 418 -1 3 1008 234 222 0 18 chr6 55521510 55521565 -93995472 - ORR1A3 LTR MaLR -146 180 127 3 1008 310 314 69 44 chr6 55522055 55522215 -93994822 + MER2 DNA MER2_type 123 286 -59 3 1008 26 30 0 0 chr6 55522435 55522468 -93994569 + AT_rich Low_complexity Low_complexity 1 33 0 3 1008 464 344 24 0 chr6 55522711 55522836 -93994201 + RSINE1 SINE B4 13 140 -25 3 1008 524 15 15 0 chr6 55522836 55522901 -93994136 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1008 317 255 320 36 chr6 55522925 55523144 -93993893 - MLT1B LTR MaLR -89 301 21 4 1008 326 361 50 36 chr6 55523143 55523364 -93993673 - RMER15 LTR ERVL -4 571 348 4 1008 207 167 0 0 chr6 55524040 55524082 -93992955 + (CATA)n Simple_repeat Simple_repeat 4 45 0 4 1008 279 0 0 0 chr6 55524653 55524684 -93992353 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1008 1469 226 185 55 chr6 55524706 55525198 -93991839 + RMER2 LTR ERV1 8 563 -4 4 1008 579 66 0 0 chr6 55525702 55525778 -93991259 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 4 1008 657 283 96 58 chr6 55526218 55526511 -93990526 + MER2 DNA MER2_type 8 311 -34 4 1008 1021 204 69 16 chr6 55526617 55526806 -93990231 - B3 SINE B2 -14 202 4 4 1008 186 43 0 0 chr6 55527125 55527148 -93989889 + (TTA)n Simple_repeat Simple_repeat 2 24 0 4 1008 323 110 0 40 chr6 55527838 55527914 -93989123 + (A)n Simple_repeat Simple_repeat 1 73 0 5 1008 305 64 0 41 chr6 55530027 55530076 -93986961 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 5 1008 21 0 0 0 chr6 55530094 55530115 -93986922 + AT_rich Low_complexity Low_complexity 1 21 0 5 1008 495 0 0 0 chr6 55530316 55530371 -93986666 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1008 210 150 0 0 chr6 55531594 55531634 -93985403 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1008 1275 243 139 6 chr6 55533252 55533604 -93983433 + MTD LTR MaLR 7 405 -14 5 1008 2648 62 9 0 chr6 55533913 55534235 -93982802 - L1_Mus1 LINE L1 0 6567 6243 5 1008 235 321 62 62 chr6 55534599 55534712 -93982325 - L2a LINE L2 -20 3406 3294 5 1008 340 353 26 0 chr6 55535936 55536052 -93980985 - LTR16C LTR ERVL 0 489 371 5 1008 233 379 53 0 chr6 55536184 55536316 -93980721 - LTR16C LTR ERVL -350 139 1 5 1008 515 261 45 13 chr6 55536476 55536631 -93980406 - Lx8 LINE L1 -305 7168 7009 5 1008 226 286 0 0 chr6 55537923 55537972 -93979065 + (CGTG)n Simple_repeat Simple_repeat 3 51 0 6 1008 377 285 134 34 chr6 55537972 55538121 -93978916 - RSINE1 SINE B4 0 165 2 6 1008 26 30 0 0 chr6 55538795 55538828 -93978209 + AT_rich Low_complexity Low_complexity 1 33 0 6 1008 386 308 85 0 chr6 55539466 55539596 -93977441 + MER2B DNA MER2_type 173 313 -23 6 1008 31 26 0 0 chr6 55539849 55539887 -93977150 + AT_rich Low_complexity Low_complexity 1 38 0 6 1008 360 326 63 16 chr6 55539954 55540144 -93976893 - Lx8 LINE L1 -79 7394 7196 6 1008 603 40 0 0 chr6 55541255 55541329 -93975708 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 6 1008 381 93 0 0 chr6 55541339 55541393 -93975644 + (TATG)n Simple_repeat Simple_repeat 2 55 0 6 1008 618 294 142 29 chr6 55542131 55542573 -93974464 - L1M6 LINE L1 -5672 824 333 6 1008 683 205 4 0 chr6 55543058 55543194 -93973843 - B1_Mur1 SINE Alu -2 147 9 6 1008 3151 183 80 2 chr6 55543218 55543815 -93973222 - Lx5 LINE L1 0 7050 6407 7 1008 744 218 26 0 chr6 55543983 55544139 -93972898 - Lx5 LINE L1 -631 6419 6260 7 1008 9966 144 15 14 chr6 55544137 55546053 -93970984 + Lx5 LINE L1 4289 6213 -837 7 1008 269 278 44 11 chr6 55546369 55546460 -93970577 - MER53 DNA hAT -8 185 92 7 1008 561 255 130 21 chr6 55547558 55547750 -93969287 - MTEa LTR MaLR 0 379 167 7 1008 296 283 0 32 chr6 55547944 55548039 -93968998 + GA-rich Low_complexity Low_complexity 2 93 0 7 1008 315 224 7 19 chr6 55548077 55548232 -93968805 + (TGG)n Simple_repeat Simple_repeat 1 153 0 7 1008 21 0 0 0 chr6 55548486 55548507 -93968530 + AT_rich Low_complexity Low_complexity 1 21 0 7 1008 864 256 45 0 chr6 55549298 55549540 -93967497 - Lx3C LINE L1 -8 6968 6716 7 1008 244 312 70 26 chr6 55549576 55549673 -93967364 - LTR48B LTR ERV1 -153 634 537 7 1008 198 0 0 0 chr6 55549673 55549695 -93967342 + (CAA)n Simple_repeat Simple_repeat 2 23 0 7 1008 244 312 70 26 chr6 55549695 55549712 -93967325 - LTR48B LTR ERV1 -251 536 517 7 1008 618 330 50 35 chr6 55549728 55550011 -93967026 - LTR48B LTR ERV1 -352 292 6 7 1008 23 0 0 0 chr6 55550046 55550069 -93966968 + AT_rich Low_complexity Low_complexity 1 23 0 7 1008 247 289 65 87 chr6 55550602 55550833 -93966204 - L1MA9 LINE L1 -10 6302 6077 8 1008 288 0 0 0 chr6 55550833 55550865 -93966172 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1008 1618 251 116 10 chr6 55550905 55551423 -93965614 - L1MA8 LINE L1 -188 6103 5531 8 1008 486 252 56 0 chr6 55551479 55551586 -93965451 - B4A SINE B4 -150 142 30 8 1008 239 271 0 63 chr6 55551530 55551593 -93965444 - ID2 SINE ID -2 81 23 8 1008 960 69 80 33 chr6 55552040 55552190 -93964847 + L1Md_F2 LINE L1 6424 6580 -2 8 1008 378 308 72 50 chr6 55552862 55553084 -93963953 - L1MEg LINE L1 -2379 3767 3541 8 1008 243 202 40 95 chr6 55553176 55553302 -93963735 - L1MEg LINE L1 -2691 3455 3337 8 1008 418 330 136 55 chr6 55553320 55553753 -93963284 - L1MEg LINE L1 -2787 3359 2892 8 1008 23 68 0 0 chr6 55553815 55553859 -93963178 + AT_rich Low_complexity Low_complexity 1 44 0 8 1008 412 324 168 53 chr6 55553884 55554671 -93962366 - L1MEg LINE L1 -4168 2074 1198 8 1008 189 74 0 0 chr6 55554684 55554711 -93962326 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1008 644 251 89 20 chr6 55555305 55555508 -93961529 + ID_B1 SINE B4 1 217 -7 8 1008 509 294 43 17 chr6 55555523 55555755 -93961282 - L1MC LINE L1 -2265 5617 5380 9 1008 418 268 8 47 chr6 55556431 55556560 -93960477 - RSINE1 SINE B4 -40 125 2 9 1008 1087 304 93 39 chr6 55556601 55557422 -93959615 - L1M4 LINE L1 -1201 4945 4081 9 1008 1019 297 82 8 chr6 55557691 55558232 -93958805 - L1MA5 LINE L1 0 6300 5726 9 1008 378 0 0 0 chr6 55558328 55558370 -93958667 + (CAAG)n Simple_repeat Simple_repeat 1 42 0 9 1008 215 361 0 0 chr6 55560017 55560078 -93956959 - ID4_ SINE ID -11 72 12 9 1008 1859 188 50 19 chr6 55561281 55561640 -93955397 + ORR1C1 LTR MaLR 5 374 -4 9 1008 3247 206 184 25 chr6 55561643 55562166 -93954871 + ORR1C1-int LTR MaLR 1 525 -984 9 1008 324 0 0 0 chr6 55562166 55562202 -93954835 + (CAA)n Simple_repeat Simple_repeat 2 37 0 9 1008 3247 206 184 25 chr6 55562202 55562666 -93954371 + ORR1C1-int LTR MaLR 526 1145 -364 9 1008 450 94 0 0 chr6 55562884 55562948 -93954089 + (CAGAA)n Simple_repeat Simple_repeat 4 67 0 9 1008 225 319 63 28 chr6 55563361 55563503 -93953534 + L1_Mur2 LINE L1 3682 3828 -2049 9 1008 1871 162 70 54 chr6 55563897 55564268 -93952769 + ORR1C1 LTR MaLR 1 377 -1 9 1008 5607 62 11 15 chr6 55564313 55565123 -93951914 + RLTR13C2 LTR ERVK 1 1031 -2 1 1008 552 30 0 0 chr6 55565123 55565189 -93951848 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1008 234 0 0 0 chr6 55565189 55565214 -93951823 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1008 1245 99 16 0 chr6 55565465 55565647 -93951390 + B2_Mm2 SINE B2 7 191 -4 1 1008 342 45 0 0 chr6 55565841 55565885 -93951152 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 1008 2553 133 21 24 chr6 55566037 55566459 -93950578 + MTC LTR MaLR 1 421 0 1 1008 504 195 24 16 chr6 55566630 55566755 -93950282 + B3A SINE B2 43 168 -30 1 1008 961 245 10 5 chr6 55566897 55567106 -93949931 - B3 SINE B2 -6 210 1 1 1008 304 255 9 81 chr6 55567127 55567238 -93949799 - ID_B1 SINE B4 -16 208 106 1 1008 1142 62 0 0 chr6 55568501 55568647 -93948390 + B1_Mus2 SINE Alu 2 147 0 1 1008 384 40 0 0 chr6 55568647 55568697 -93948340 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1008 1322 83 57 0 chr6 55568949 55569141 -93947896 - Lx LINE L1 0 6654 6452 1 1008 203 255 0 0 chr6 55569704 55569751 -93947286 + (CAG)n Simple_repeat Simple_repeat 3 49 0 1 1008 226 322 109 15 chr6 55569903 55570168 -93946869 - L1MEc LINE L1 -4170 2230 1941 1 1008 475 267 82 16 chr6 55570384 55570567 -93946470 + RLTR42-int LTR ERVK 1176 1370 -4152 1 1008 451 118 11 21 chr6 55570777 55570872 -93946165 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 1 1008 871 275 125 57 chr6 55570926 55571314 -93945723 - L1MEc LINE L1 -5213 1187 784 1 1008 1041 284 83 6 chr6 55571314 55571664 -93945373 - MTEa LTR MaLR 0 379 3 1 1008 871 275 125 57 chr6 55571664 55571876 -93945161 - L1MEc LINE L1 -5617 783 546 1 1008 289 235 0 0 chr6 55572401 55572469 -93944568 + RMER30 DNA MER1_type 134 201 -1 1 1008 731 92 0 9 chr6 55572504 55572614 -93944423 + (TCC)n Simple_repeat Simple_repeat 1 109 0 1 1008 374 260 40 27 chr6 55572730 55572880 -93944157 - L1MEc LINE L1 -6156 244 93 1 1008 309 68 0 0 chr6 55572897 55572941 -93944096 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1009 2205 124 0 3 chr6 55574535 55574874 -93942163 - ORR1A1 LTR MaLR -8 338 1 1 1009 22 70 0 0 chr6 55574921 55574964 -93942073 + AT_rich Low_complexity Low_complexity 1 43 0 1 1009 647 181 258 6 chr6 55575601 55575779 -93941258 - URR1B DNA MER1_type 0 225 3 1 1009 597 211 0 0 chr6 55578007 55578140 -93938897 + (TA)n Simple_repeat Simple_repeat 2 134 0 1 1009 351 0 0 0 chr6 55580040 55580079 -93936958 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1009 370 368 32 16 chr6 55580415 55580600 -93936437 + B4A SINE B4 6 193 -99 1 1009 423 0 0 0 chr6 55580630 55580677 -93936360 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 1 1009 1488 69 0 7 chr6 55580747 55581217 -93935820 + (CA)n Simple_repeat Simple_repeat 1 466 0 1 1009 1247 184 171 97 chr6 55581413 55581804 -93935233 - MT2A LTR ERVL -112 421 2 1 1009 192 152 0 0 chr6 55582877 55582910 -93934127 + GA-rich Low_complexity Low_complexity 4 36 0 1 1009 230 327 66 76 chr6 55583037 55583325 -93933712 + ORR1E LTR MaLR 75 359 0 1 1009 8201 72 21 11 chr6 55583400 55584527 -93932510 - Lx3_Mus LINE L1 -1 7008 5871 1 1009 244 344 57 16 chr6 55585074 55585198 -93931839 + MER5A DNA MER1_type 4 132 -57 1 1009 611 314 29 0 chr6 55585392 55585599 -93931438 + L1MA9 LINE L1 5715 5927 -385 1 1009 414 69 0 0 chr6 55585730 55585788 -93931249 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1009 467 324 49 0 chr6 55586214 55586356 -93930681 + RSINE1 SINE B4 4 152 -13 1 1009 525 104 0 0 chr6 55586365 55586442 -93930595 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 1 1009 590 276 166 41 chr6 55586568 55586849 -93930188 + Lx9 LINE L1 7178 7473 -171 1 1009 369 0 0 0 chr6 55586849 55586890 -93930147 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1009 590 276 166 41 chr6 55586890 55587023 -93930014 + Lx9 LINE L1 7474 7643 -1 1 1009 4556 72 5 2 chr6 55587629 55588225 -93928812 - L1_Mus3 LINE L1 -1 6637 6040 1 1009 521 173 16 17 chr6 55588470 55588587 -93928450 - B3 SINE B2 -71 124 1 1 1009 923 201 29 14 chr6 55588603 55588810 -93928227 - B3 SINE B2 -5 211 2 1 1009 339 310 53 46 chr6 55588854 55589006 -93928031 - RSINE1 SINE B4 -10 155 3 1 1009 282 87 0 0 chr6 55590959 55591005 -93926032 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1009 257 338 62 19 chr6 55591483 55591643 -93925394 + MER5A DNA MER1_type 20 186 -3 1 1009 1727 0 80 0 chr6 55592101 55592302 -93924735 + L1Md_T LINE L1 6366 6582 0 1 1009 496 289 144 18 chr6 55592625 55593119 -93923918 - L1MB4 LINE L1 -98 6082 5527 1 1009 240 163 0 0 chr6 55594710 55594753 -93922284 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1009 209 200 0 0 chr6 55596532 55596567 -93920470 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1009 205 0 0 103 chr6 55600762 55600801 -93916236 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1009 23 0 0 0 chr6 55601827 55601850 -93915187 + AT_rich Low_complexity Low_complexity 1 23 0 1 1009 226 349 0 9 chr6 55601991 55602098 -93914939 - L1M5 LINE L1 -393 5731 5626 1 1009 182 62 31 0 chr6 55602102 55602134 -93914903 + (TCTA)n Simple_repeat Simple_repeat 3 35 0 1 1009 848 232 140 16 chr6 55602160 55602410 -93914627 - Lx2B LINE L1 -8 6992 6712 1 1009 1957 120 91 8 chr6 55602411 55602763 -93914274 + Lx2B LINE L1 5784 6164 -836 1 1009 4422 26 0 0 chr6 55603526 55604019 -93913018 - MT2_Mm LTR ERVL 0 493 1 1 1009 321 0 0 0 chr6 55604019 55604057 -93912980 - MERVL-int LTR ERVL 0 5485 5448 1 1009 362 167 46 35 chr6 55604057 55604144 -93912893 - ORR1A3-int LTR MaLR -1323 640 553 1 1009 48311 16 6 0 chr6 55604144 55609471 -93907566 - MERVL-int LTR ERVL -125 5360 1 1 1009 4422 26 0 0 chr6 55609471 55609964 -93907073 - MT2_Mm LTR ERVL 0 493 1 1 1009 201 247 91 34 chr6 55609964 55610052 -93906985 - MIRc SINE MIR -73 195 103 1 1009 649 198 9 0 chr6 55610144 55610260 -93906777 + B1_Mur1 SINE Alu 4 120 -29 1 1009 243 0 0 0 chr6 55610261 55610288 -93906749 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1 1009 342 269 39 49 chr6 55610977 55611180 -93905857 - Arthur1 DNA Tip100 -887 3060 2860 1 1009 24 67 0 0 chr6 55612429 55612474 -93904563 + AT_rich Low_complexity Low_complexity 1 45 0 1 1009 354 280 110 0 chr6 55613828 55613928 -93903109 - PB1D10 SINE Alu 0 117 7 1 1009 1243 34 0 0 chr6 55614575 55614721 -93902316 + B1_Mus1 SINE Alu 3 148 0 1 1009 21 0 0 0 chr6 55615047 55615068 -93901969 + AT_rich Low_complexity Low_complexity 1 21 0 1 1009 187 329 82 0 chr6 55615076 55615149 -93901888 + MIR SINE MIR 57 135 -127 1 1009 563 306 7 7 chr6 55615776 55615921 -93901116 + RSINE1 SINE B4 8 152 -13 1 1009 220 221 13 13 chr6 55616430 55616508 -93900529 + (TATG)n Simple_repeat Simple_repeat 4 81 0 1 1009 24 0 0 0 chr6 55616947 55616971 -93900066 + AT_rich Low_complexity Low_complexity 1 24 0 1 1009 201 318 44 5 chr6 55617915 55618032 -93899005 + MIR SINE MIR 22 144 -64 1 1009 327 327 20 0 chr6 55618489 55618590 -93898447 + B1_Mus1 SINE Alu 1 103 -45 1 1009 459 0 0 0 chr6 55618614 55618665 -93898372 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1009 576 0 0 0 chr6 55618665 55618728 -93898309 + (GA)n Simple_repeat Simple_repeat 2 65 0 1 1009 257 248 27 82 chr6 55618788 55618898 -93898139 - MLT1A1 LTR MaLR 0 408 305 1 1009 813 165 180 31 chr6 55620049 55620243 -93896794 + URR1B DNA MER1_type 2 224 -1 1 1009 213 119 0 0 chr6 55621932 55621974 -93895063 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1009 213 108 0 0 chr6 55621974 55622011 -93895026 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1009 1154 68 7 0 chr6 55622012 55622158 -93894879 - B1_Mus1 SINE Alu -1 147 1 1 1009 189 338 13 13 chr6 55622421 55622499 -93894538 - MIRb SINE MIR -70 198 121 1 1009 407 287 0 9 chr6 55623072 55623181 -93893856 + PB1D10 SINE Alu 2 109 -8 1 1009 279 295 41 31 chr6 55623647 55623745 -93893292 + MER21B LTR ERV1 294 392 -471 1 1009 435 252 94 56 chr6 55623867 55624027 -93893010 + MER21B LTR ERV1 616 781 -82 1 1009 420 135 0 0 chr6 55624750 55624824 -93892213 + (CCAA)n Simple_repeat Simple_repeat 2 75 0 1 1009 444 37 0 0 chr6 55627261 55627315 -93889722 + (GGA)n Simple_repeat Simple_repeat 3 56 0 1 1009 369 0 0 0 chr6 55628374 55628415 -93888622 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1009 239 245 0 0 chr6 55629435 55629488 -93887549 + CT-rich Low_complexity Low_complexity 1 53 0 1 1009 438 20 0 0 chr6 55630717 55630768 -93886269 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1009 666 0 0 0 chr6 55633262 55633336 -93883701 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1009 618 333 29 49 chr6 55635030 55635276 -93881761 - B4A SINE B4 0 292 52 1 1009 489 17 0 0 chr6 55635834 55635892 -93881145 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1009 682 187 7 21 chr6 55636587 55636729 -93880308 + MTD LTR MaLR 1 140 -279 1 1009 269 300 0 98 chr6 55637459 55637592 -93879445 + MER34 LTR ERV1 63 182 -360 1 1009 369 0 0 0 chr6 55637771 55637812 -93879225 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1009 229 174 0 42 chr6 55638355 55638403 -93878634 + (ATG)n Simple_repeat Simple_repeat 1 46 0 1 1009 281 278 88 80 chr6 55640818 55640876 -93876161 - B1F1 SINE Alu 0 149 88 1 1009 288 0 0 0 chr6 55640876 55640908 -93876129 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1009 281 278 88 80 chr6 55640908 55640986 -93876051 - B1F1 SINE Alu -62 87 12 1 1009 21 0 0 0 chr6 55641379 55641400 -93875637 + AT_rich Low_complexity Low_complexity 1 21 0 1 1009 3017 175 68 32 chr6 55641894 55642484 -93874553 - RMER19C LTR ERVK 0 611 1 1 1009 220 0 0 79 chr6 55642745 55642783 -93874254 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1009 1165 35 21 0 chr6 55642785 55642929 -93874108 - B1_Mus1 SINE Alu -1 147 1 1 1009 311 294 42 8 chr6 55643206 55643326 -93873711 - MER45A DNA Tip100 0 178 55 1 1009 345 265 52 42 chr6 55643576 55643768 -93873269 - MLT1A LTR MaLR 0 390 195 2 1009 202 282 0 0 chr6 55644110 55644181 -93872856 + (TAAA)n Simple_repeat Simple_repeat 4 74 0 2 1009 641 205 17 0 chr6 55644360 55644477 -93872560 - B3A SINE B2 -78 120 2 2 1009 393 70 0 0 chr6 55644599 55644656 -93872381 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1009 392 286 5 0 chr6 55644657 55644759 -93872278 - B1F1 SINE Alu -43 106 1 2 1009 360 0 0 0 chr6 55645521 55645561 -93871476 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1009 2408 291 120 34 chr6 55645561 55646567 -93870470 + Lx9 LINE L1 6358 7449 -195 2 1009 233 215 81 36 chr6 55646677 55646788 -93870249 + Lx8 LINE L1 7348 7463 -10 2 1009 489 34 0 0 chr6 55646840 55646899 -93870138 + (TATG)n Simple_repeat Simple_repeat 4 62 0 2 1009 444 314 24 16 chr6 55646899 55647025 -93870012 - RSINE1 SINE B4 -35 130 4 2 1009 396 0 0 0 chr6 55647041 55647085 -93869952 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1009 236 238 99 12 chr6 55647178 55647259 -93869778 + BC1_Mm scRNA scRNA 10 97 -55 2 1009 22 70 0 0 chr6 55647268 55647311 -93869726 + AT_rich Low_complexity Low_complexity 1 43 0 2 1009 253 341 95 28 chr6 55647612 55647938 -93869099 - Charlie5 DNA MER1_type -5 2619 2272 2 1009 545 280 59 47 chr6 55648049 55648285 -93868752 - MER21B LTR ERV1 -486 377 139 2 1009 2897 171 63 10 chr6 55648979 55649554 -93867483 - RMER20B LTR ERVK -2 625 21 2 1009 438 20 0 0 chr6 55650434 55650485 -93866552 + (GGGA)n Simple_repeat Simple_repeat 3 53 0 2 1009 215 31 0 30 chr6 55652269 55652302 -93864735 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1009 26 0 0 0 chr6 55654139 55654165 -93862872 + AT_rich Low_complexity Low_complexity 1 26 0 2 1009 23 0 0 0 chr6 55654495 55654518 -93862519 + AT_rich Low_complexity Low_complexity 1 23 0 2 1009 439 274 0 10 chr6 55655413 55655509 -93861528 + PB1D10 SINE Alu 11 105 -12 2 1009 3838 61 161 6 chr6 55655863 55656408 -93860629 + L1_Mus3 LINE L1 6009 6638 0 2 1009 860 111 7 0 chr6 55656431 55656566 -93860471 + (GGA)n Simple_repeat Simple_repeat 3 138 0 2 1009 2513 318 93 16 chr6 55656988 55658103 -93858934 - Lx7 LINE L1 -4 7469 6205 2 1009 380 20 20 0 chr6 55658103 55658152 -93858885 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2 1009 2513 328 112 28 chr6 55658152 55658197 -93858840 - Lx7 LINE L1 -1492 6204 6159 2 1009 1120 67 6 45 chr6 55658197 55658353 -93858684 - B1_Mur4 SINE Alu 0 150 1 2 1009 2513 275 62 119 chr6 55658353 55659225 -93857812 - Lx7 LINE L1 -1538 6158 5355 2 1009 230 291 63 44 chr6 55659241 55659446 -93857591 - Lx7 LINE L1 -15 7681 7473 2 1009 3557 277 83 21 chr6 55659465 55660615 -93856422 - Lx7 LINE L1 -368 7328 6107 2 1009 522 246 22 68 chr6 55660616 55660838 -93856199 - Lx7 LINE L1 -530 5350 5139 2 1009 288 289 23 25 chr6 55661254 55661415 -93855622 - Lx7 LINE L1 -2858 2989 2805 2 1009 5088 75 6 6 chr6 55661420 55662090 -93854947 - L1_Mus1 LINE L1 0 6567 5898 2 1009 423 0 0 0 chr6 55662327 55662374 -93854663 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1009 576 121 0 0 chr6 55662374 55662465 -93854572 + (GA)n Simple_repeat Simple_repeat 1 91 0 2 1009 708 238 86 14 chr6 55662730 55662939 -93854098 - ORR1D1 LTR MaLR -55 319 96 2 1009 422 242 34 47 chr6 55662940 55663086 -93853951 - Lx9 LINE L1 -627 7017 6779 2 1009 522 306 77 49 chr6 55663090 55663375 -93853662 + Lx9 LINE L1 7173 7465 -179 2 1009 270 0 0 0 chr6 55663387 55663417 -93853620 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1009 519 71 35 0 chr6 55663420 55663505 -93853532 + (TA)n Simple_repeat Simple_repeat 1 88 0 2 1009 561 219 125 0 chr6 55663670 55663798 -93853239 + B1F2 SINE Alu 5 148 -1 2 1009 429 20 0 0 chr6 55664383 55664433 -93852604 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1009 660 252 85 39 chr6 55664916 55665176 -93851861 + RMER15 LTR ERVL 288 559 -16 2 1009 218 281 48 28 chr6 55667420 55667583 -93849454 + MIR SINE MIR 5 163 -113 2 1009 245 288 40 56 chr6 55667620 55667745 -93849292 - LTR16E1 LTR ERVL -1 537 415 2 1009 374 303 40 24 chr6 55667966 55668091 -93848946 - Tigger5 DNA MER2_type 0 2406 2280 2 1009 324 157 0 0 chr6 55669671 55669722 -93847315 + Lx5 LINE L1 6846 6896 -154 2 1009 1009 250 50 12 chr6 55669729 55669988 -93847049 - MTD LTR MaLR -150 269 1 2 1009 436 178 19 0 chr6 55670991 55671098 -93845939 + (CATA)n Simple_repeat Simple_repeat 4 112 0 2 1009 400 279 8 8 chr6 55671098 55671221 -93845816 - L1MA4 LINE L1 -388 5912 5790 2 1009 690 316 0 0 chr6 55671224 55671382 -93845655 + B3A SINE B2 5 162 -36 2 1009 595 293 168 10 chr6 55671439 55671742 -93845295 - L1MA4 LINE L1 -487 5804 5454 2 1009 34 0 0 0 chr6 55672064 55672098 -93844939 + AT_rich Low_complexity Low_complexity 1 34 0 2 1009 964 283 100 37 chr6 55672098 55672208 -93844829 - Lx8 LINE L1 0 7473 7343 2 1009 279 0 0 0 chr6 55672208 55672239 -93844798 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 2 1009 964 283 100 37 chr6 55672239 55672558 -93844479 - Lx8 LINE L1 -131 7342 7017 2 1009 378 61 0 0 chr6 55672686 55672735 -93844302 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1009 1141 237 120 7 chr6 55672746 55673163 -93843874 - L1MA7 LINE L1 -87 6204 5741 2 1009 186 43 0 0 chr6 55673365 55673388 -93843649 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1009 298 300 120 0 chr6 55673488 55673588 -93843449 - PB1D9 SINE Alu -6 114 3 2 1009 229 346 96 0 chr6 55673791 55673895 -93843142 - Tigger5 DNA MER2_type -2 2404 2291 2 1009 308 339 26 17 chr6 55673976 55674093 -93842944 - Tigger5 DNA MER2_type -2288 118 1 2 1009 316 237 160 30 chr6 55674355 55674455 -93842582 + RSINE1 SINE B4 16 128 -37 2 1009 350 21 21 0 chr6 55674488 55674535 -93842502 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1009 3780 241 16 8 chr6 55676650 55677449 -93839588 - Lx5 LINE L1 -5 7045 6240 2 1009 294 95 0 0 chr6 55677778 55677820 -93839217 + (GGGAGA)n Simple_repeat Simple_repeat 5 46 0 2 1009 275 257 172 32 chr6 55678231 55678388 -93838649 - MTEa LTR MaLR 0 379 201 2 1009 593 251 191 17 chr6 55678939 55679174 -93837863 - RMER15 LTR ERVL 0 575 300 2 1009 2217 184 50 15 chr6 55680431 55680834 -93836203 + Lx6 LINE L1 6305 6721 -739 2 1009 458 264 81 84 chr6 55680871 55681144 -93835893 - L1MA7 LINE L1 -3 6288 6017 2 1009 3492 286 35 29 chr6 55681180 55682372 -93834665 - RMER1C Other Other -13 1329 378 2 1009 253 309 0 0 chr6 55682463 55682518 -93834519 - RMER1C Other Other -1202 140 86 2 1009 419 252 10 0 chr6 55682851 55682954 -93834083 - RMER1B Other Other -352 714 611 2 1009 190 375 12 48 chr6 55683018 55683102 -93833935 - L3b LINE CR1 -18 464 384 2 1009 585 329 56 94 chr6 55683393 55683786 -93833251 - MTC LTR MaLR -43 378 1 2 1009 511 248 18 0 chr6 55683793 55683902 -93833135 - Lx8 LINE L1 -1114 6359 6249 2 1009 444 19 0 0 chr6 55684022 55684075 -93832962 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1009 1004 288 28 45 chr6 55684080 55684668 -93832369 - L1MDa LINE L1 -2896 3372 2699 2 1009 366 221 86 141 chr6 55684739 55684902 -93832135 + MTE2b LTR MaLR 1 154 -225 2 1009 374 270 50 71 chr6 55684989 55685277 -93831760 - L1MDa LINE L1 -5232 1401 1022 2 1009 645 14 0 0 chr6 55685284 55685358 -93831679 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1009 246 62 0 0 chr6 55685418 55685450 -93831587 + (TTCCC)n Simple_repeat Simple_repeat 5 36 0 2 1009 242 245 86 105 chr6 55685509 55685614 -93831423 + MTD LTR MaLR 17 119 -300 2 1009 519 368 21 25 chr6 55685657 55685941 -93831096 + MT2A LTR ERVL 155 437 -96 2 1009 4130 249 73 31 chr6 55686031 55687169 -93829868 + MMAR1 DNA Mariner 99 1284 -2 2 1009 497 44 0 14 chr6 55688348 55688417 -93828620 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 2 1009 351 0 0 0 chr6 55689407 55689446 -93827591 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1009 488 279 0 16 chr6 55689473 55689597 -93827440 - RSINE1 SINE B4 -42 123 2 2 1009 549 0 0 0 chr6 55689606 55689667 -93827370 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1009 399 269 41 46 chr6 55689995 55690148 -93826889 - MLT1J LTR MaLR -251 261 66 2 1009 543 306 64 11 chr6 55690280 55690468 -93826569 + Tigger5 DNA MER2_type 47 244 -2162 2 1009 255 322 33 0 chr6 55690456 55690546 -93826491 + Tigger5 DNA MER2_type 2283 2375 -31 2 1009 366 272 34 23 chr6 55690615 55690841 -93826196 + (TG)n Simple_repeat Simple_repeat 1 228 0 2 1009 369 0 0 0 chr6 55690972 55691013 -93826024 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1009 351 185 45 36 chr6 55692080 55692192 -93824845 - Lx9 LINE L1 0 7644 7532 2 1009 369 0 0 0 chr6 55692198 55692239 -93824798 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1009 4827 203 41 6 chr6 55692254 55693238 -93823799 - Lx9 LINE L1 -245 7399 6382 2 1009 227 32 32 0 chr6 55693247 55693278 -93823759 + Lx9 LINE L1 6428 6459 -1185 2 1009 330 253 83 52 chr6 55693283 55693379 -93823658 - Lx9 LINE L1 -1234 6410 6312 2 1009 518 309 0 21 chr6 55693589 55693731 -93823306 - B1F SINE Alu -8 141 3 2 1009 1628 228 102 13 chr6 55694537 55694920 -93822117 - MTD LTR MaLR 0 419 3 2 1009 22 0 0 0 chr6 55695492 55695514 -93821523 + AT_rich Low_complexity Low_complexity 1 22 0 2 1009 189 0 0 0 chr6 55696693 55696714 -93820323 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1009 538 226 107 29 chr6 55697471 55697676 -93819361 + MLT1B LTR MaLR 2 222 -168 2 1009 728 287 122 21 chr6 55697812 55698140 -93818897 + MLT1B-int LTR MaLR 22 382 -989 2 1009 296 258 15 15 chr6 55698173 55698240 -93818797 - B4 SINE B4 -8 284 218 2 1009 1271 54 6 0 chr6 55698270 55698438 -93818599 + (TCTA)n Simple_repeat Simple_repeat 2 170 0 2 1009 408 360 84 18 chr6 55698605 55698831 -93818206 + MIR SINE MIR 2 242 -20 2 1009 27 0 0 0 chr6 55698836 55698863 -93818174 + AT_rich Low_complexity Low_complexity 1 27 0 2 1009 185 318 30 0 chr6 55699068 55699134 -93817903 + MIRc SINE MIR 38 105 -163 2 1009 6492 65 9 5 chr6 55701582 55702374 -93814663 - L1_Mus1 LINE L1 0 6567 5773 2 1009 236 252 31 108 chr6 55703576 55703705 -93813332 + PB1D7 SINE Alu 1 119 -1 2 1009 188 400 0 0 chr6 55703747 55703817 -93813220 + MIRc SINE MIR 90 159 -109 2 1009 348 232 110 0 chr6 55703979 55704061 -93812976 + L2a LINE L2 3336 3426 0 2 1010 412 333 70 6 chr6 55705931 55706103 -93810934 - MIR SINE MIR -17 245 63 2 1010 1304 238 50 3 chr6 55706398 55706697 -93810340 - Lx7 LINE L1 -599 7097 6785 3 1010 286 197 16 0 chr6 55706699 55706760 -93810277 - Lx7 LINE L1 -867 6829 6768 3 1010 300 275 0 0 chr6 55706759 55706828 -93810209 + Lx7 LINE L1 6675 6743 -953 3 1010 874 219 16 26 chr6 55710693 55710885 -93806152 - B3 SINE B2 0 216 27 3 1010 6927 62 8 6 chr6 55712047 55712940 -93804097 - L1Md_F2 LINE L1 -12 6570 5695 3 1010 303 344 48 18 chr6 55712941 55713107 -93803930 + MER5B DNA MER1_type 8 178 0 3 1010 486 0 0 0 chr6 55713235 55713289 -93803748 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1010 209 205 0 0 chr6 55713640 55713679 -93803358 + CT-rich Low_complexity Low_complexity 4 42 0 3 1010 826 159 87 0 chr6 55714548 55714686 -93802351 + B1_Mur4 SINE Alu 1 150 0 3 1010 296 86 35 95 chr6 55716235 55716351 -93800686 + (CAAA)n Simple_repeat Simple_repeat 2 110 0 3 1010 1471 150 279 21 chr6 55716352 55716685 -93800352 + MTD LTR MaLR 1 419 0 3 1010 813 253 6 0 chr6 55716917 55717079 -93799958 - B3A SINE B2 -35 163 1 3 1010 222 118 0 0 chr6 55717098 55717132 -93799905 + (GAAAA)n Simple_repeat Simple_repeat 3 36 0 3 1010 429 206 0 0 chr6 55717541 55717633 -93799404 + (CATATA)n Simple_repeat Simple_repeat 5 96 0 3 1010 180 0 0 0 chr6 55717634 55717654 -93799383 + (GA)n Simple_repeat Simple_repeat 2 21 0 3 1010 275 272 136 0 chr6 55717741 55717910 -93799127 - MER20B DNA MER1_type -6 777 586 3 1010 422 242 8 70 chr6 55717940 55717991 -93799046 + MER5A1 DNA MER1_type 1 48 -118 3 1010 576 106 0 0 chr6 55717991 55718076 -93798961 + (CAG)n Simple_repeat Simple_repeat 2 86 0 3 1010 422 242 8 70 chr6 55718076 55718153 -93798884 + MER5A1 DNA MER1_type 49 121 -45 3 1010 246 355 56 0 chr6 55718745 55718852 -93798185 - MER5A DNA MER1_type -29 160 48 3 1010 239 237 0 17 chr6 55719353 55719413 -93797624 - LTR33 LTR ERVL -120 395 337 3 1010 334 269 113 71 chr6 55719600 55719768 -93797269 - MER53 DNA hAT -15 178 4 3 1010 839 301 195 11 chr6 55720306 55720782 -93796255 + MTE-int LTR MaLR 935 1498 -82 3 1010 339 325 26 104 chr6 55720813 55721122 -93795915 + ORR1D2 LTR MaLR 18 302 -68 3 1010 687 283 44 31 chr6 55721328 55721649 -93795388 + L1ME4a LINE L1 5599 5923 -201 3 1010 567 0 0 0 chr6 55722163 55722226 -93794811 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1010 1562 240 24 31 chr6 55722372 55722794 -93794243 + MTD LTR MaLR 1 419 0 3 1010 296 350 63 0 chr6 55723146 55723356 -93793681 + MIRb SINE MIR 42 256 -6 3 1010 396 0 0 0 chr6 55723585 55723629 -93793408 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1010 926 292 115 44 chr6 55725404 55726037 -93791000 - Kanga1a DNA Tc2 -6 748 64 3 1010 541 289 55 62 chr6 55726816 55727107 -93789930 - B4 SINE B4 0 292 4 3 1010 704 59 0 0 chr6 55727121 55727206 -93789831 - L1_Mus4 LINE L1 -710 5926 5842 3 1010 5348 89 4 12 chr6 55727206 55727414 -93789623 + L1_Mus4 LINE L1 5911 6121 -515 3 1010 2029 124 130 46 chr6 55727414 55727852 -93789185 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1010 5348 89 4 12 chr6 55727852 55728373 -93788664 + L1_Mus4 LINE L1 6122 6634 -2 3 1010 4886 65 0 0 chr6 55728469 55729073 -93787964 - L1_Mus1 LINE L1 -49 6518 5915 3 1010 3288 89 2 0 chr6 55729072 55729523 -93787514 + MusHAL1 LINE L1 1354 1805 -907 3 1010 1841 179 31 41 chr6 55729625 55730038 -93786999 - MTC LTR MaLR -12 409 1 3 1010 214 238 16 16 chr6 55730398 55730462 -93786575 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 3 1010 282 29 0 0 chr6 55731032 55731067 -93785970 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1010 531 0 0 0 chr6 55731114 55731173 -93785864 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1010 312 27 0 0 chr6 55731173 55731209 -93785828 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1010 387 247 0 0 chr6 55731822 55731907 -93785130 - B1F SINE Alu -6 143 59 3 1010 418 326 143 0 chr6 55731971 55732146 -93784891 + MER63A DNA AcHobo 1 200 -10 3 1010 324 171 64 0 chr6 55732451 55732591 -93784446 + CT-rich Low_complexity Low_complexity 1 149 0 3 1010 288 70 0 0 chr6 55733076 55733119 -93783918 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1010 652 282 27 0 chr6 55733142 55733362 -93783675 + L1_Rod LINE L1 5611 5836 -11 3 1010 297 0 0 0 chr6 55734436 55734469 -93782568 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 3 1010 2421 266 103 27 chr6 55734761 55735963 -93781074 + Lx7 LINE L1 4638 5961 -1512 3 1010 1131 206 23 85 chr6 55735979 55736258 -93780779 + ORR1D2-int LTR MaLR 1079 1334 -36 3 1010 405 0 0 0 chr6 55736258 55736303 -93780734 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1010 216 0 0 0 chr6 55736303 55736326 -93780711 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1010 1131 206 23 85 chr6 55736326 55736352 -93780685 + ORR1D2-int LTR MaLR 1335 1365 -5 3 1010 509 259 0 8 chr6 55736356 55736473 -93780564 + ORR1D2 LTR MaLR 1 116 -254 3 1010 225 394 121 0 chr6 55736586 55736685 -93780352 + MLT1H1 LTR MaLR 229 339 -216 3 1010 306 0 0 0 chr6 55736914 55736948 -93780089 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1010 364 373 90 14 chr6 55738032 55738454 -93778583 + L2 LINE L2 2392 2845 -574 3 1010 983 143 11 0 chr6 55739448 55739623 -93777414 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 3 1010 180 137 39 19 chr6 55739629 55739681 -93777356 + CT-rich Low_complexity Low_complexity 1 53 0 3 1010 771 274 124 0 chr6 55739835 55740094 -93776943 - MER2 DNA MER2_type 0 345 55 3 1010 234 0 0 0 chr6 55740977 55741003 -93776034 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1010 224 320 0 13 chr6 55741172 55741248 -93775789 + CT-rich Low_complexity Low_complexity 2 76 0 3 1010 393 39 0 0 chr6 55743329 55743380 -93773657 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1010 551 289 33 16 chr6 55743951 55744134 -93772903 + MER20 DNA MER1_type 34 219 0 3 1010 400 319 113 72 chr6 55745230 55745672 -93771365 - MER74A LTR ERVL -13 545 86 3 1010 252 0 0 0 chr6 55745918 55745946 -93771091 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 3 1010 780 250 11 16 chr6 55745954 55746137 -93770900 - B3 SINE B2 -33 183 2 3 1010 637 277 0 0 chr6 55746146 55746287 -93770750 - B1_Mur1 SINE Alu -6 143 3 3 1010 274 62 14 71 chr6 55747483 55747553 -93769484 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 3 1010 200 132 0 26 chr6 55748767 55748806 -93768231 + A-rich Low_complexity Low_complexity 5 42 0 3 1010 360 226 47 9 chr6 55748936 55749043 -93767994 + Charlie5 DNA MER1_type 11 121 -2503 3 1010 945 226 72 30 chr6 55749047 55749420 -93767617 + Charlie5 DNA MER1_type 2235 2623 -1 3 1010 961 249 24 5 chr6 55750550 55750760 -93766277 + B3 SINE B2 1 214 -2 3 1010 287 380 42 7 chr6 55751610 55751753 -93765284 + MER45A DNA Tip100 10 157 -21 3 1010 1190 71 3 31 chr6 55752229 55752519 -93764518 + (TTTC)n Simple_repeat Simple_repeat 1 282 0 3 1010 411 234 274 50 chr6 55753648 55753956 -93763081 + L1ME4a LINE L1 5741 6117 -7 3 1010 233 333 73 0 chr6 55756225 55756348 -93760689 + MIRb SINE MIR 118 249 -19 3 1010 345 312 153 7 chr6 55758293 55758567 -93758470 + MER31A LTR ERV1 42 355 -130 3 1010 376 210 0 0 chr6 55759275 55759337 -93757700 + ID4 SINE ID 7 68 -15 3 1010 299 306 0 14 chr6 55759337 55759348 -93757689 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 3 1010 282 261 88 73 chr6 55760667 55760851 -93756186 + MIR3 SINE MIR 18 200 -68 3 1010 216 0 0 0 chr6 55762884 55762908 -93754129 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 3 1010 218 359 102 20 chr6 55762936 55763132 -93753905 - L2b LINE L2 -181 3194 2983 3 1010 684 307 137 42 chr6 55763875 55764256 -93752781 - MTD LTR MaLR -1 418 2 3 1010 301 357 38 23 chr6 55765349 55765481 -93751556 + B1F SINE Alu 1 134 -15 3 1010 1095 139 0 0 chr6 55765490 55765670 -93751367 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1010 236 209 0 29 chr6 55765670 55765729 -93751308 + G-rich Low_complexity Low_complexity 11 67 0 3 1010 217 328 14 43 chr6 55765863 55765933 -93751104 - B1F1 SINE Alu -70 79 12 3 1010 4601 57 0 1 chr6 55766121 55766833 -93750204 - L1_Mus2 LINE L1 -429 6137 5427 3 1010 249 108 0 0 chr6 55766894 55766931 -93750106 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 3 1010 271 56 0 0 chr6 55767134 55767170 -93749867 - U2 snRNA snRNA -152 36 1 3 1010 492 18 0 0 chr6 55767328 55767385 -93749652 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1010 681 182 48 20 chr6 55767385 55767523 -93749514 - B3A SINE B2 -55 143 2 3 1010 182 365 73 0 chr6 55768021 55768158 -93748879 + MIRb SINE MIR 99 245 -23 3 1010 401 282 46 23 chr6 55769993 55770167 -93746870 - MER34 LTR ERV1 -62 480 303 3 1010 8049 91 2 5 chr6 55770454 55771966 -93745071 - L1_Mus3 LINE L1 0 6638 5133 3 1010 4753 132 5 75 chr6 55771965 55772833 -93744204 + L1_Mus3 LINE L1 4359 5165 -718 3 1010 670 320 63 17 chr6 55773264 55773611 -93743426 + L1MA6 LINE L1 5938 6300 0 3 1010 2130 312 89 38 chr6 55773792 55775077 -93741960 + Lx8 LINE L1 5671 7021 -452 3 1010 198 103 0 0 chr6 55775113 55775142 -93741895 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 3 1010 297 298 0 12 chr6 55775487 55775572 -93741465 + L1M6 LINE L1 1577 1660 -4836 3 1010 684 186 0 0 chr6 55775854 55776021 -93741016 + (CA)n Simple_repeat Simple_repeat 1 167 0 3 1010 689 163 28 14 chr6 55777157 55777300 -93739737 - URR1A DNA MER1_type 0 226 82 3 1010 255 328 63 3 chr6 55778733 55778894 -93738143 - MIRc SINE MIR -82 186 8 3 1010 282 29 0 0 chr6 55779162 55779197 -93737840 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1010 577 242 91 0 chr6 55779531 55779663 -93737374 - B1F1 SINE Alu 0 149 6 3 1010 1508 251 25 17 chr6 55780525 55780885 -93736152 + ORR1D2 LTR MaLR 3 365 -5 3 1010 308 336 76 13 chr6 55781226 55781464 -93735573 + L1MD LINE L1 5057 5309 -837 3 1010 234 0 0 0 chr6 55781604 55781630 -93735407 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1010 244 191 0 0 chr6 55783036 55783078 -93733959 + ORR1E LTR MaLR 77 118 -241 4 1010 750 204 23 0 chr6 55784219 55784351 -93732686 - B1_Mur1 SINE Alu -5 144 10 4 1010 525 216 0 10 chr6 55784550 55784653 -93732384 + B1_Mur1 SINE Alu 43 144 -5 4 1010 587 269 99 26 chr6 55785423 55785614 -93731423 - B3 SINE B2 -10 206 2 4 1010 746 264 11 0 chr6 55785983 55786161 -93730876 + B3A SINE B2 1 180 -18 4 1010 663 169 0 0 chr6 55787456 55787633 -93729404 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 1010 1014 102 0 0 chr6 55787656 55787832 -93729205 + (CA)n Simple_repeat Simple_repeat 2 177 0 4 1010 696 301 87 20 chr6 55789432 55789883 -93727154 - L1MA5A LINE L1 -409 5888 5408 4 1010 362 315 90 56 chr6 55789925 55790132 -93726905 - L1M3 LINE L1 -1801 4339 4143 4 1010 387 0 0 0 chr6 55790132 55790175 -93726862 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1010 362 315 90 56 chr6 55790175 55790377 -93726660 - L1M3 LINE L1 -1998 4142 3917 4 1010 947 298 97 12 chr6 55790607 55791155 -93725882 - Lx7 LINE L1 -1742 5954 5336 4 1010 1139 301 72 25 chr6 55791158 55791513 -93725524 - Lx7 LINE L1 -3438 2442 2081 4 1010 299 45 0 22 chr6 55791513 55791559 -93725478 + (TTG)n Simple_repeat Simple_repeat 2 46 0 4 1010 1139 299 83 27 chr6 55791559 55792247 -93724790 - Lx7 LINE L1 -3753 2094 1361 4 1010 195 69 0 0 chr6 55792253 55792282 -93724755 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1010 389 117 33 0 chr6 55792505 55792565 -93724472 - ORR1C2 LTR MaLR -4 380 319 4 1010 1993 200 14 0 chr6 55793177 55793527 -93723510 - MTC LTR MaLR -2 419 65 4 1010 438 108 0 0 chr6 55793527 55793592 -93723445 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1010 320 389 0 9 chr6 55793678 55793792 -93723245 - MT2A LTR ERVL -108 425 313 4 1010 523 321 77 38 chr6 55793749 55794014 -93723023 - MTEa LTR MaLR -82 297 24 4 1010 2611 71 0 14 chr6 55794014 55794371 -93722666 + L1Md_F2 LINE L1 6218 6569 -13 4 1010 511 288 58 34 chr6 55794430 55794502 -93722535 + MLT1D LTR MaLR 294 362 -143 4 1010 1526 206 81 8 chr6 55794502 55794680 -93722357 - ORR1C2 LTR MaLR 0 384 201 4 1010 536 0 16 0 chr6 55794680 55794744 -93722293 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1010 1526 206 81 8 chr6 55794744 55794923 -93722114 - ORR1C2 LTR MaLR -184 200 2 4 1010 511 288 58 34 chr6 55794923 55795055 -93721982 + MLT1D LTR MaLR 363 503 -2 4 1010 456 245 215 7 chr6 55795762 55795906 -93721131 + MTD LTR MaLR 91 264 -155 4 1010 856 223 58 31 chr6 55796097 55796314 -93720723 - MTD LTR MaLR -16 403 196 4 1010 767 294 5 0 chr6 55796316 55796500 -93720537 - B3 SINE B2 -28 188 4 4 1010 595 294 5 48 chr6 55796503 55796689 -93720348 - MTD LTR MaLR -209 210 33 4 1010 223 349 15 0 chr6 55796719 55796785 -93720252 - PB1D10 SINE Alu -27 90 24 4 1010 434 339 43 58 chr6 55797345 55797671 -93719366 + Charlie26a DNA MER1_type 1 321 -4 4 1010 408 88 0 0 chr6 55797935 55797992 -93719045 + (CAT)n Simple_repeat Simple_repeat 2 58 0 4 1010 180 344 116 8 chr6 55798029 55798158 -93718879 - MIRc SINE MIR -45 223 81 4 1010 262 291 52 52 chr6 55798323 55798439 -93718598 - MER20 DNA MER1_type -94 125 10 4 1010 1715 244 14 24 chr6 55799227 55799646 -93717391 + MTD LTR MaLR 3 417 -2 4 1010 251 330 47 0 chr6 55799684 55799790 -93717247 + MIRb SINE MIR 92 202 -66 4 1010 820 177 217 16 chr6 55799905 55800070 -93716967 + RLTR20D LTR ERVK 1 204 -364 4 1010 315 0 0 0 chr6 55800070 55800105 -93716932 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1010 1022 101 6 0 chr6 55800105 55800262 -93716775 + (GA)n Simple_repeat Simple_repeat 1 159 0 4 1010 820 177 217 16 chr6 55800262 55800279 -93716758 + RLTR20D LTR ERVK 205 220 -348 4 1010 1205 190 10 0 chr6 55800276 55800476 -93716561 + RLTR20D LTR ERVK 367 568 0 4 1010 408 20 0 0 chr6 55802686 55802735 -93714302 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1010 405 0 0 0 chr6 55803772 55803817 -93713220 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1010 393 22 0 0 chr6 55804030 55804076 -93712961 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1010 186 189 0 0 chr6 55804601 55804638 -93712399 + GA-rich Low_complexity Low_complexity 2 38 0 4 1010 528 16 0 0 chr6 55804638 55804699 -93712338 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1010 302 321 8 22 chr6 55805030 55805164 -93711873 + GA-rich Low_complexity Low_complexity 1 132 0 4 1010 351 291 62 8 chr6 55805164 55805292 -93711745 - MER73 LTR ERVL -272 372 238 4 1010 1958 216 34 7 chr6 55805729 55806139 -93710898 - MTC LTR MaLR 0 421 1 4 1010 306 280 59 29 chr6 55806403 55806539 -93710498 - L1MEe LINE L1 -978 5168 5029 4 1010 4075 85 19 3 chr6 55806588 55807152 -93709885 + L1_Mus4 LINE L1 6064 6636 0 4 1010 228 116 0 0 chr6 55807528 55807571 -93709466 - Lx3A LINE L1 0 6981 6939 4 1010 1072 92 45 17 chr6 55807569 55807745 -93709292 - Lx3A LINE L1 -448 6533 6353 4 1010 252 267 0 16 chr6 55807745 55807806 -93709231 - B4 SINE B4 -202 90 31 4 1010 306 269 67 50 chr6 55808339 55808519 -93708518 - L1MEe LINE L1 -3740 2426 2244 4 1010 824 298 109 85 chr6 55808848 55809014 -93708023 + L1M5 LINE L1 3307 3489 -2657 4 1010 303 345 0 0 chr6 55809014 55809124 -93707913 + PB1D10 SINE Alu 1 110 -7 4 1010 824 298 109 85 chr6 55809124 55809385 -93707652 + L1M5 LINE L1 3490 3756 -2390 4 1010 3225 120 35 0 chr6 55809385 55809867 -93707170 + Lx2B LINE L1 6502 7000 0 4 1010 824 298 109 85 chr6 55809867 55810182 -93706855 + L1M5 LINE L1 3757 4068 -2078 4 1010 195 100 0 0 chr6 55811198 55811228 -93705809 + (TCCCC)n Simple_repeat Simple_repeat 3 32 0 4 1010 898 81 0 22 chr6 55811228 55811367 -93705670 + (TTCC)n Simple_repeat Simple_repeat 3 138 0 4 1010 254 29 29 0 chr6 55811550 55811585 -93705452 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1010 1750 273 129 11 chr6 55811585 55812458 -93704579 - L1MC2 LINE L1 -19 6325 5350 4 1010 972 151 129 10 chr6 55812482 55812683 -93704354 + URR1A DNA MER1_type 1 225 -1 4 1010 483 33 0 0 chr6 55812801 55812862 -93704175 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 4 1010 234 239 124 37 chr6 55812915 55813076 -93703961 - L1MC2 LINE L1 -1120 5026 4852 4 1010 3708 30 2 0 chr6 55813868 55814304 -93702733 - L1Md_F2 LINE L1 -2 6580 6144 4 1010 772 115 0 24 chr6 55814304 55814429 -93702608 + B2_Mm2 SINE B2 55 176 -19 4 1010 240 335 47 99 chr6 55814595 55814807 -93702230 - L2c LINE L2 -5 3382 3182 4 1010 23 0 0 0 chr6 55815652 55815675 -93701362 + AT_rich Low_complexity Low_complexity 1 23 0 4 1010 267 317 94 31 chr6 55816433 55816625 -93700412 - L2c LINE L2 -1135 2284 2081 4 1010 329 349 38 76 chr6 55816821 55817112 -93699925 - L2 LINE L2 -813 2606 2327 4 1010 1009 119 20 0 chr6 55817291 55817442 -93699595 + B2_Mm2 SINE B2 1 154 -41 4 1010 243 88 0 0 chr6 55817443 55817477 -93699560 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 4 1010 318 189 18 6 chr6 55818173 55818338 -93698699 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 4 1010 693 329 94 41 chr6 55818899 55819274 -93697763 + MTD LTR MaLR 6 406 -13 4 1010 1974 199 56 27 chr6 55819274 55819683 -93697354 - MTC LTR MaLR 0 421 1 4 1010 693 329 94 41 chr6 55819683 55819700 -93697337 + MTD LTR MaLR 407 419 0 4 1010 327 337 50 20 chr6 55820012 55820112 -93696925 + RSINE1 SINE B4 35 137 -28 4 1010 616 199 4 9 chr6 55822929 55823165 -93693872 + CT-rich Low_complexity Low_complexity 1 234 0 4 1010 431 286 156 36 chr6 55823184 55823376 -93693661 - B4A SINE B4 -77 215 1 4 1010 201 348 43 11 chr6 55823576 55823669 -93693368 + L3 LINE CR1 3799 3894 -595 4 1010 886 314 130 23 chr6 55825720 55826189 -93690848 - Lx8 LINE L1 0 7473 6954 4 1010 468 0 0 0 chr6 55826189 55826241 -93690796 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1010 886 314 130 23 chr6 55826241 55826411 -93690626 - Lx8 LINE L1 -520 6953 6767 4 1010 417 193 36 27 chr6 55827736 55827848 -93689189 + RCHARR1 DNA MER1_type 789 901 -73 4 1010 1954 134 96 17 chr6 55827853 55828042 -93688995 - ORR1C2 LTR MaLR 0 384 196 4 1010 567 0 0 0 chr6 55828042 55828105 -93688932 + (GA)n Simple_repeat Simple_repeat 1 63 0 4 1010 1954 134 96 17 chr6 55828105 55828271 -93688766 - ORR1C2 LTR MaLR -189 195 1 4 1010 810 0 0 0 chr6 55828579 55828669 -93688368 + (GAA)n Simple_repeat Simple_repeat 2 91 0 4 1010 204 67 0 0 chr6 55831639 55831669 -93685368 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 1010 281 250 65 11 chr6 55832239 55832332 -93684705 + MER117 DNA MER1_type 68 165 -32 4 1010 575 231 21 43 chr6 55832506 55832646 -93684391 + B1_Mur2 SINE Alu 12 148 -1 4 1010 375 315 9 0 chr6 55832756 55832864 -93684173 + PB1D10 SINE Alu 7 115 -2 4 1010 189 107 0 0 chr6 55832867 55832895 -93684142 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1010 605 290 74 15 chr6 55833679 55833882 -93683155 + B3 SINE B2 2 216 0 4 1010 218 204 36 18 chr6 55833928 55833983 -93683054 + MIRb SINE MIR 213 268 0 4 1010 483 60 0 0 chr6 55834034 55834101 -93682936 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1010 346 316 158 0 chr6 55835123 55835275 -93681762 + MER5A DNA MER1_type 2 177 -12 4 1010 324 0 0 0 chr6 55835439 55835475 -93681562 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1010 198 0 0 0 chr6 55835508 55835530 -93681507 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 4 1010 1248 270 114 19 chr6 55835715 55836093 -93680944 - MTD LTR MaLR -5 414 1 4 1011 513 0 0 0 chr6 55837298 55837355 -93679682 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1011 186 324 99 27 chr6 55837735 55837846 -93679191 + L2b LINE L2 3257 3375 0 4 1011 415 295 142 63 chr6 55839277 55839615 -93677422 - MLT1I LTR MaLR -1 410 43 4 1011 1511 134 72 8 chr6 55840173 55840437 -93676600 - Lx LINE L1 -7 6647 6367 4 1011 2105 118 38 78 chr6 55840439 55840863 -93676174 - L1_Mur1 LINE L1 -1116 4770 4364 4 1011 492 18 0 0 chr6 55840949 55841006 -93676031 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1011 189 0 0 0 chr6 55841008 55841029 -93676008 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1011 385 354 131 36 chr6 55841913 55842242 -93674795 + MTEa-int LTR MaLR 237 632 -948 4 1011 275 326 22 0 chr6 55842261 55842350 -93674687 + B4A SINE B4 4 94 -198 4 1011 8119 40 2 2 chr6 55842457 55843994 -93673043 - L1Md_F2 LINE L1 -1 6581 5047 4 1011 1527 319 82 16 chr6 55844018 55844626 -93672411 + MTEa-int LTR MaLR 926 1573 -7 4 1011 361 301 64 84 chr6 55844632 55844823 -93672214 + MTEa LTR MaLR 1 179 -200 4 1011 900 321 79 64 chr6 55844827 55845421 -93671616 + Lx8 LINE L1 6789 7389 -84 4 1011 3744 61 6 0 chr6 55845421 55845893 -93671144 + L1_Mus1 LINE L1 6091 6565 -2 4 1011 900 321 79 64 chr6 55845893 55845971 -93671066 + Lx8 LINE L1 7390 7471 -2 4 1011 184 296 37 0 chr6 55846690 55846744 -93670293 - MIR SINE MIR -19 243 188 4 1011 329 143 0 15 chr6 55847319 55847394 -93669643 - Lx3A LINE L1 0 6981 6904 5 1011 462 358 68 0 chr6 55847413 55847561 -93669476 - RSINE1 SINE B4 -6 159 2 5 1011 2213 160 34 3 chr6 55848372 55848754 -93668283 - ORR1B1 LTR MaLR 0 394 1 5 1011 1370 218 26 58 chr6 55848832 55849178 -93667859 - ORR1D1 LTR MaLR -1 373 39 5 1011 350 261 17 51 chr6 55849640 55849757 -93667280 - HAL1-3A_ME LINE L1 -771 2087 1975 5 1011 207 139 0 0 chr6 55849757 55849793 -93667244 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1011 234 0 0 0 chr6 55851016 55851042 -93665995 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1011 217 135 27 0 chr6 55851254 55851291 -93665746 + CT-rich Low_complexity Low_complexity 1 38 0 5 1011 716 125 8 0 chr6 55852560 55852688 -93664349 + (TC)n Simple_repeat Simple_repeat 2 130 0 5 1011 408 268 103 0 chr6 55852737 55852834 -93664203 + PB1D10 SINE Alu 7 113 -4 5 1011 240 35 0 0 chr6 55852946 55852975 -93664062 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 5 1011 422 230 145 22 chr6 55852975 55853113 -93663924 - Lx4B LINE L1 -21 7037 6883 5 1011 14076 160 33 45 chr6 55853095 55855036 -93662001 - Lx4B LINE L1 -280 6778 4798 5 1011 378 0 0 0 chr6 55855036 55855078 -93661959 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1011 14076 164 84 72 chr6 55855078 55856913 -93660124 - Lx4B LINE L1 -1074 4812 2634 5 1011 1187 110 218 12 chr6 55856913 55857170 -93659867 - BGLII LTR ERVK 0 421 112 5 1011 14076 164 84 72 chr6 55857170 55858333 -93658704 - Lx4B LINE L1 -1074 2633 1250 5 1011 1667 162 15 0 chr6 55858336 55858602 -93658435 - ORR1A3 LTR MaLR -8 318 49 5 1011 1142 176 25 22 chr6 55858612 55858925 -93658112 - Lx4B LINE L1 -4172 1705 1178 5 1011 965 197 166 12 chr6 55858921 55859168 -93657869 - L1VL4 LINE L1 -5480 822 538 5 1011 408 40 0 0 chr6 55859955 55860005 -93657032 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1011 304 357 85 87 chr6 55860477 55860901 -93656136 + L1MEb LINE L1 75 497 -5597 5 1011 304 366 74 39 chr6 55860963 55861193 -93655844 + L1MEb LINE L1 626 863 -5337 5 1011 285 337 87 18 chr6 55861445 55861826 -93655211 + L1MEb LINE L1 987 1393 -4807 5 1011 678 109 0 0 chr6 55862375 55862476 -93654561 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 5 1011 788 77 111 0 chr6 55862719 55862836 -93654201 + B1_Mm SINE Alu 18 147 0 5 1011 282 291 83 21 chr6 55862940 55863084 -93653953 + MER104 DNA Tc2 7 159 -22 5 1011 234 0 0 0 chr6 55863639 55863665 -93653372 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1011 190 258 121 0 chr6 55864165 55864231 -93652806 + MIR SINE MIR 151 224 -38 5 1011 330 230 54 0 chr6 55864391 55864465 -93652572 + B4A SINE B4 1 78 -214 5 1011 862 288 5 21 chr6 55864439 55864726 -93652311 - MTD LTR MaLR -139 282 1 5 1011 749 234 93 29 chr6 55865099 55865271 -93651766 + B3 SINE B2 34 216 0 5 1011 2031 84 4 0 chr6 55865819 55866092 -93650945 + L1_Mus1 LINE L1 6294 6567 0 5 1011 495 225 67 47 chr6 55866163 55866312 -93650725 + RSINE1 SINE B4 4 155 -10 5 1011 201 263 0 0 chr6 55866443 55866500 -93650537 + A-rich Low_complexity Low_complexity 1 57 0 5 1011 294 308 0 49 chr6 55867075 55867157 -93649880 + ID4 SINE ID 6 83 0 5 1011 183 42 0 0 chr6 55867157 55867181 -93649856 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1011 460 283 58 0 chr6 55867792 55867912 -93649125 + B1_Mur1 SINE Alu 1 127 -22 5 1011 693 98 36 30 chr6 55868011 55868179 -93648858 + (TAGA)n Simple_repeat Simple_repeat 1 169 0 5 1011 278 206 73 0 chr6 55868813 55868881 -93648156 - ID4 SINE ID -9 74 2 5 1011 274 232 114 14 chr6 55869002 55869072 -93647965 - MER2B DNA MER2_type -7 329 253 5 1011 217 49 98 0 chr6 55870033 55870074 -93646963 + (TTTCC)n Simple_repeat Simple_repeat 2 46 0 5 1011 740 134 8 0 chr6 55870845 55870979 -93646058 + (TC)n Simple_repeat Simple_repeat 2 136 0 5 1011 521 260 104 55 chr6 55872290 55872473 -93644564 + B3A SINE B2 6 197 -1 5 1011 1162 74 0 0 chr6 55872503 55872651 -93644386 + B1_Mus1 SINE Alu 1 148 0 5 1011 192 149 0 0 chr6 55872652 55872699 -93644338 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 5 1011 272 70 23 0 chr6 55872740 55872783 -93644254 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1011 589 342 60 49 chr6 55872813 55873080 -93643957 - B4A SINE B4 -18 274 5 5 1011 225 358 21 10 chr6 55873118 55873144 -93643893 - BC1_Mm scRNA scRNA -51 101 7 5 1011 315 224 15 15 chr6 55873144 55873212 -93643825 - tRNA-Ala-GCY_ tRNA tRNA -5 70 3 5 1011 310 214 115 58 chr6 55873215 55873354 -93643683 - MIRb SINE MIR -59 209 63 5 1011 282 181 28 0 chr6 55873413 55873485 -93643552 + A-rich Low_complexity Low_complexity 2 75 0 5 1011 492 66 21 184 chr6 55875049 55875201 -93641836 + L1Md_F3 LINE L1 6481 6584 0 5 1011 4252 154 55 10 chr6 55875204 55875551 -93641486 - L1_Mur2 LINE L1 -2373 3504 3127 5 1011 279 0 0 0 chr6 55875551 55875582 -93641455 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1011 4252 154 55 10 chr6 55875582 55876101 -93640936 - L1_Mur2 LINE L1 -2751 3126 2600 5 1011 365 92 53 0 chr6 55877123 55877199 -93639838 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 1011 506 124 0 11 chr6 55877280 55877370 -93639667 + (TATG)n Simple_repeat Simple_repeat 4 92 0 5 1011 890 277 26 18 chr6 55877558 55877786 -93639251 - B4A SINE B4 -21 271 42 5 1011 367 308 65 37 chr6 55877841 55878057 -93638980 - HAL1 LINE L1 -784 1723 1502 5 1011 267 31 0 0 chr6 55878395 55878427 -93638610 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1011 347 331 55 78 chr6 55878454 55878762 -93638275 - HAL1 LINE L1 -1414 1093 793 5 1011 278 152 0 17 chr6 55878767 55878827 -93638210 + (TATG)n Simple_repeat Simple_repeat 2 60 0 5 1011 253 281 0 0 chr6 55878895 55878952 -93638085 - HAL1 LINE L1 -1817 690 634 5 1011 281 335 92 31 chr6 55879492 55879809 -93637228 - L1MB7 LINE L1 -112 6932 6597 5 1011 255 286 171 119 chr6 55879822 55880104 -93636933 - MTEb LTR MaLR -15 364 2 5 1011 264 302 0 0 chr6 55880104 55880167 -93636870 - MLT2B3 LTR ERVL -490 64 2 5 1011 501 347 25 0 chr6 55880185 55880427 -93636610 - L1MB7 LINE L1 -460 6584 6337 5 1011 565 314 85 15 chr6 55880557 55880816 -93636221 - B4A SINE B4 -15 277 1 5 1011 1297 282 70 51 chr6 55880850 55882021 -93635016 - L1MB7 LINE L1 -729 6309 5117 5 1011 197 139 23 0 chr6 55882045 55882088 -93634949 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1011 326 291 58 0 chr6 55882226 55882398 -93634639 + L1M4 LINE L1 5263 5444 -730 5 1011 282 56 0 0 chr6 55882641 55882677 -93634360 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 5 1011 648 280 81 20 chr6 55882690 55882985 -93634052 - L1MB7 LINE L1 -2034 4972 4660 5 1011 1436 244 61 20 chr6 55883259 55883602 -93633435 - MTEb LTR MaLR -1 378 22 5 1011 448 338 104 14 chr6 55884044 55884332 -93632705 - L1MB7 LINE L1 -2765 4241 3928 5 1011 306 289 0 0 chr6 55884522 55884598 -93632439 - ID4 SINE ID -3 80 5 5 1011 4830 191 103 7 chr6 55884624 55885799 -93631238 - Lx9 LINE L1 -23 7621 6306 5 1011 578 14 14 0 chr6 55885869 55885940 -93631097 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 5 1011 305 282 60 0 chr6 55885998 55886115 -93630922 - L1MB7 LINE L1 -3117 3889 3766 5 1011 1769 302 63 25 chr6 55886143 55887379 -93629658 - Lx8 LINE L1 -34 7439 6103 5 1011 281 247 21 31 chr6 55887382 55887478 -93629559 - L1MB7 LINE L1 -3242 3758 3664 5 1011 378 0 0 0 chr6 55887599 55887641 -93629396 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1011 198 0 0 0 chr6 55887665 55887687 -93629350 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5 1011 26 30 0 0 chr6 55888260 55888293 -93628744 + AT_rich Low_complexity Low_complexity 1 33 0 5 1011 335 194 97 0 chr6 55888328 55888390 -93628647 - B3 SINE B2 -86 130 63 5 1011 473 273 27 10 chr6 55888424 55888620 -93628417 - L1MB7 LINE L1 -4682 2420 2085 5 1011 239 362 51 6 chr6 55888771 55888949 -93628088 - L1MB7 LINE L1 -5025 1879 1694 5 1011 30 27 0 0 chr6 55889084 55889121 -93627916 + AT_rich Low_complexity Low_complexity 1 37 0 5 1011 430 313 88 29 chr6 55889220 55889641 -93627396 - L1MB7 LINE L1 -5461 1443 998 5 1011 3015 205 84 1 chr6 55890420 55891149 -93625888 - Lx9 LINE L1 0 7644 6856 5 1011 1269 256 68 37 chr6 55891738 55892091 -93624946 - ORR1D2 LTR MaLR -2 368 5 5 1011 24 0 0 0 chr6 55892106 55892130 -93624907 + AT_rich Low_complexity Low_complexity 1 24 0 5 1011 261 287 49 123 chr6 55892132 55892295 -93624742 - MER44A DNA MER2_type -175 164 14 5 1011 1297 227 92 0 chr6 55895311 55895593 -93621444 - MTD LTR MaLR -107 312 5 5 1011 2048 157 12 6 chr6 55895935 55896269 -93620768 + ORR1B2 LTR MaLR 1 336 -31 5 1011 308 337 97 86 chr6 55896594 55896873 -93620164 - LTR33 LTR ERVL -209 306 25 5 1011 320 0 25 0 chr6 55897001 55897041 -93619996 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1011 2073 240 51 28 chr6 55898646 55899212 -93617825 - Lx7 LINE L1 -582 7114 6536 5 1011 411 73 0 0 chr6 55899354 55899409 -93617628 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1011 254 29 29 0 chr6 55901546 55901581 -93615456 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 5 1011 645 256 102 44 chr6 55902429 55902654 -93614383 + MER2 DNA MER2_type 93 330 -15 5 1011 1182 48 0 26 chr6 55903318 55903329 -93613708 - B1_Mm SINE Alu 0 147 140 5 1011 243 0 0 0 chr6 55903329 55903356 -93613681 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1011 1182 48 0 26 chr6 55903356 55903495 -93613542 - B1_Mm SINE Alu -8 139 1 5 1011 26 0 0 0 chr6 55903506 55903532 -93613505 + AT_rich Low_complexity Low_complexity 1 26 0 5 1011 327 174 209 27 chr6 55903532 55903680 -93613357 - Lx8 LINE L1 -3 7470 7296 5 1011 3414 40 0 0 chr6 55903882 55904311 -93612726 + L1Md_F2 LINE L1 5158 5586 -297 5 1011 8524 29 1 1 chr6 55904311 55905306 -93611731 + L1Md_F2 LINE L1 5587 6581 -1 5 1011 60 27 0 0 chr6 55905423 55905497 -93611540 + AT_rich Low_complexity Low_complexity 1 74 0 5 1011 255 318 15 0 chr6 55905709 55905775 -93611262 - ID4 SINE ID -14 69 3 5 1011 305 242 192 66 chr6 55905956 55906345 -93610692 - L1MEc LINE L1 -4930 1470 1012 5 1011 243 61 0 0 chr6 55906345 55906378 -93610659 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1011 305 242 178 59 chr6 55906378 55906482 -93610555 - L1MEc LINE L1 -5393 1022 927 5 1011 249 314 14 21 chr6 55906776 55906916 -93610121 - L1MEc LINE L1 -5558 842 704 5 1011 465 19 0 0 chr6 55906925 55906979 -93610058 + (TTA)n Simple_repeat Simple_repeat 3 56 0 5 1011 7355 135 14 28 chr6 55906990 55908221 -93608816 - Lx3C LINE L1 -18 6958 5745 5 1011 813 93 0 0 chr6 55908225 55908343 -93608694 + L1_Mur1 LINE L1 4493 4610 -1276 5 1011 32217 70 29 5 chr6 55908339 55913542 -93603495 + L1Md_F LINE L1 260 5586 -297 5 1011 7863 53 9 3 chr6 55913542 55914521 -93602516 + L1Md_F2 LINE L1 5587 6571 -11 5 1011 32217 107 17 117 chr6 55914521 55914981 -93602056 + L1Md_F LINE L1 5587 5600 -283 5 1011 422 366 31 17 chr6 55915183 55915533 -93601504 - L1MEc LINE L1 -6010 390 36 5 1011 588 14 0 0 chr6 55916040 55916109 -93600928 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 5 1011 542 321 51 32 chr6 55916208 55916424 -93600613 + ID_B1 SINE B4 2 221 -3 5 1011 255 61 0 0 chr6 55916483 55916516 -93600521 + (CACAA)n Simple_repeat Simple_repeat 5 37 0 6 1011 588 107 0 0 chr6 55917293 55917396 -93599641 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 6 1011 229 200 164 0 chr6 55919113 55919168 -93597869 + ID4_ SINE ID 1 64 -19 6 1011 256 282 0 0 chr6 55919170 55919241 -93597796 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 1011 217 397 30 15 chr6 55919884 55920007 -93597030 - MIRc SINE MIR -115 153 36 6 1011 533 298 27 33 chr6 55920464 55920648 -93596389 + MER20 DNA MER1_type 34 216 -3 6 1011 242 295 19 112 chr6 55920790 55920897 -93596140 + MT2B2 LTR ERVL 156 252 -332 6 1011 454 328 62 0 chr6 55920801 55920929 -93596108 + B1F2 SINE Alu 4 139 -10 6 1011 903 220 62 121 chr6 55921602 55921907 -93595130 + B4A SINE B4 1 287 -5 6 1011 213 211 0 0 chr6 55922128 55922180 -93594857 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1011 459 0 0 0 chr6 55922971 55923022 -93594015 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1011 192 40 0 0 chr6 55923058 55923083 -93593954 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 6 1011 565 307 88 9 chr6 55923674 55923891 -93593146 - MER67B LTR ERV1 -2 659 426 6 1011 401 179 219 6 chr6 55924045 55924160 -93592877 - MER67B LTR ERV1 -259 402 293 6 1011 822 266 81 13 chr6 55924244 55924341 -93592696 + Lx8 LINE L1 6798 6928 -545 6 1011 360 0 0 0 chr6 55924341 55924381 -93592656 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1011 822 248 79 8 chr6 55924381 55924561 -93592476 + Lx8 LINE L1 6929 7115 -358 6 1011 423 0 0 0 chr6 55924739 55924786 -93592251 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1011 373 218 51 0 chr6 55924786 55924856 -93592181 - MER67B LTR ERV1 -492 169 96 6 1011 536 296 85 53 chr6 55927274 55927463 -93589574 + B3A SINE B2 1 195 -3 6 1011 1281 238 120 16 chr6 55927709 55928085 -93588952 - MTD LTR MaLR 0 419 5 6 1011 204 307 13 119 chr6 55928552 55928711 -93588326 - L2c LINE L2 -16 3371 3230 6 1011 4137 33 0 2 chr6 55930073 55930556 -93586481 + LTRIS_Mm LTR ERV1 1 482 0 6 1011 305 295 199 40 chr6 55930890 55931116 -93585921 + MER2 DNA MER2_type 8 269 -76 6 1011 191 338 75 0 chr6 55931126 55931206 -93585831 + MIR SINE MIR 186 268 0 6 1011 243 232 18 18 chr6 55931664 55931721 -93585316 + MLT2B2 LTR ERVL 370 426 -136 6 1011 201 269 77 0 chr6 55932075 55932127 -93584910 - MIRb SINE MIR -37 231 176 6 1011 237 65 0 0 chr6 55932181 55932212 -93584825 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 6 1011 1078 290 152 21 chr6 55932404 55932985 -93584052 + Lx8 LINE L1 6812 7468 -5 6 1011 213 205 0 0 chr6 55933422 55933461 -93583576 + GA-rich Low_complexity Low_complexity 4 42 0 6 1011 798 178 0 37 chr6 55933970 55934104 -93582933 - B3 SINE B2 -86 130 2 6 1011 569 276 34 18 chr6 55934165 55934480 -93582557 - Lx8 LINE L1 -711 6762 6415 6 1011 1036 260 35 94 chr6 55934473 55934961 -93582076 + Lx5 LINE L1 4519 4977 -903 6 1011 7173 167 41 6 chr6 55934966 55936525 -93580512 + Lx5 LINE L1 5419 7050 0 6 1011 848 255 78 15 chr6 55936561 55937031 -93580006 + L1_Mur3 LINE L1 4942 5500 -656 6 1011 276 127 0 0 chr6 55937214 55937269 -93579768 + (A)n Simple_repeat Simple_repeat 1 55 0 6 1011 418 180 15 30 chr6 55937626 55937758 -93579279 + GA-rich Low_complexity Low_complexity 6 135 0 6 1011 743 83 9 0 chr6 55937791 55937899 -93579138 + (GA)n Simple_repeat Simple_repeat 1 109 0 6 1011 1143 93 0 0 chr6 55938287 55938449 -93578588 + (TC)n Simple_repeat Simple_repeat 1 162 0 6 1011 311 357 83 0 chr6 55938477 55938645 -93578392 - Lx8 LINE L1 -163 7310 7129 6 1011 357 289 47 29 chr6 55938656 55938827 -93578210 - Lx8 LINE L1 -378 7095 6922 6 1011 423 156 115 0 chr6 55938904 55939000 -93578037 - Lx3A LINE L1 -5 6976 6870 6 1011 6727 114 25 13 chr6 55939013 55940061 -93576976 - Lx3A LINE L1 -14 6967 5908 6 1011 978 118 6 40 chr6 55940083 55940218 -93576819 + Lx3A LINE L1 5747 5882 -1099 6 1011 3813 35 39 0 chr6 55940218 55940682 -93576355 - RLTR45 LTR ERVK 0 482 1 6 1011 978 118 6 40 chr6 55940682 55940715 -93576322 + Lx3A LINE L1 5883 5909 -1072 6 1011 294 29 0 0 chr6 55940715 55940750 -93576287 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1011 814 215 55 58 chr6 55940771 55941028 -93576009 + L1_Mur3 LINE L1 5359 5614 -266 6 1011 923 133 29 217 chr6 55941028 55941268 -93575769 - RMER19B LTR ERVK -706 196 2 6 1011 352 344 19 5 chr6 55941269 55941472 -93575565 + Lx8 LINE L1 6695 6919 -554 6 1011 715 275 53 29 chr6 55941810 55942016 -93575021 - B3 SINE B2 0 216 6 6 1011 255 277 28 47 chr6 55942094 55942200 -93574837 - MTD-int LTR MaLR -1154 104 1 6 1011 1070 295 79 19 chr6 55942274 55942640 -93574397 - MTD LTR MaLR -14 405 18 6 1011 1339 282 73 45 chr6 55942726 55943153 -93573884 - MTE-int LTR MaLR -1130 450 12 6 1011 714 291 124 29 chr6 55943944 55944429 -93572608 + MT2A LTR ERVL 3 533 0 6 1011 620 203 81 0 chr6 55944485 55944608 -93572429 + B1_Mur1 SINE Alu 6 138 -11 6 1011 456 19 0 0 chr6 55944608 55944661 -93572376 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1011 466 108 12 12 chr6 55944661 55944745 -93572292 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1011 829 304 71 18 chr6 55944825 55945207 -93571830 + RMER5 LTR ERV1 113 514 -20 6 1011 498 316 25 46 chr6 55945385 55945581 -93571456 - B3A SINE B2 -5 193 2 6 1011 927 254 14 18 chr6 55945679 55945896 -93571141 + ID_B1 SINE B4 9 224 0 6 1011 1965 34 4 0 chr6 55947271 55947507 -93569530 - L1Md_A LINE L1 0 6582 6346 6 1011 510 294 44 68 chr6 55947581 55947833 -93569204 + LTR86A2 LTR ERVL 46 291 -217 6 1011 652 173 0 36 chr6 55947997 55948135 -93568902 - URR1B DNA MER1_type -7 218 86 6 1011 209 315 43 33 chr6 55949089 55949181 -93567856 + L2 LINE L2 2765 2857 -562 6 1011 441 286 63 28 chr6 55949290 55949542 -93567495 + L1M3 LINE L1 3906 4166 -1974 6 1011 28537 112 33 4 chr6 55949547 55952053 -93564984 - L1_Mus3 LINE L1 0 6638 4065 6 1011 672 13 0 0 chr6 55952053 55952130 -93564907 + (GA)n Simple_repeat Simple_repeat 1 77 0 6 1011 28537 125 30 3 chr6 55952130 55955496 -93561541 - L1_Mus3 LINE L1 -1819 4064 615 6 1011 308 251 188 28 chr6 55955757 55955970 -93561067 - RMER5 LTR ERV1 -26 508 262 6 1011 257 263 98 37 chr6 55956223 55956432 -93560605 + L1MD LINE L1 4490 4711 -1435 6 1011 229 292 132 30 chr6 55957421 55957587 -93559450 - L2a LINE L2 -4 3422 3240 6 1011 525 297 96 9 chr6 55957691 55957964 -93559073 + L1MD LINE L1 5458 5752 -432 6 1011 846 113 113 0 chr6 55957983 55958116 -93558921 - B1_Mus1 SINE Alu 0 148 1 6 1011 327 311 71 24 chr6 55958294 55958462 -93558575 - L2 LINE L2 -528 2891 2716 6 1011 225 154 0 0 chr6 55958500 55958539 -93558498 + C-rich Low_complexity Low_complexity 4 42 0 6 1011 804 306 56 26 chr6 55959881 55960223 -93556814 - MER89 LTR ERV1 -4 555 204 6 1011 1015 52 80 22 chr6 55960994 55961119 -93555918 + B1_Mus2 SINE Alu 1 136 -11 6 1011 391 46 46 0 chr6 55961119 55961184 -93555853 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 6 1011 1015 52 80 22 chr6 55961184 55961195 -93555842 + B1_Mus2 SINE Alu 137 145 -2 6 1011 198 219 52 52 chr6 55963120 55963197 -93553840 + MIRc SINE MIR 22 98 -170 6 1011 393 22 0 0 chr6 55963943 55963989 -93553048 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1011 420 55 0 0 chr6 55963989 55964043 -93552994 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1011 306 0 0 0 chr6 55964501 55964535 -93552502 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1011 1078 91 14 0 chr6 55964693 55964836 -93552201 - B1_Mus1 SINE Alu -3 145 1 6 1011 772 219 117 24 chr6 55964852 55964888 -93552149 + L1MD1 LINE L1 5133 5167 -979 6 1011 438 36 0 0 chr6 55964888 55964944 -93552093 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1011 2082 266 112 15 chr6 55964944 55965868 -93551169 + L1MD1 LINE L1 5168 6189 -53 6 1011 858 90 0 0 chr6 55966333 55966455 -93550582 - B1_Mur4 SINE Alu -7 143 22 6 1011 336 202 45 100 chr6 55966370 55966480 -93550557 - MT2B LTR ERVL -343 258 155 6 1011 182 214 52 35 chr6 55967133 55967191 -93549846 + MIR SINE MIR 80 138 -124 6 1012 264 346 63 0 chr6 55969200 55969359 -93547678 + MER46C DNA MER2_type 70 238 -100 6 1012 959 152 11 0 chr6 55971593 55971770 -93545267 + CT-rich Low_complexity Low_complexity 2 180 0 6 1012 21 36 0 0 chr6 55972221 55972249 -93544788 + AT_rich Low_complexity Low_complexity 1 28 0 6 1012 432 0 0 0 chr6 55972318 55972366 -93544671 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1012 675 37 0 0 chr6 55972685 55972767 -93544270 + (GA)n Simple_repeat Simple_repeat 1 82 0 6 1012 354 250 0 26 chr6 55974199 55974277 -93542760 + PB1D10 SINE Alu 16 91 -26 6 1012 240 122 0 0 chr6 55975064 55975105 -93541932 + (CAGAG)n Simple_repeat Simple_repeat 5 45 0 6 1012 472 161 103 43 chr6 55975672 55975789 -93541248 + B3 SINE B2 92 215 -1 6 1012 189 0 0 0 chr6 55976600 55976621 -93540416 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1012 555 29 0 0 chr6 55977222 55977291 -93539746 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1012 620 318 105 19 chr6 55978379 55978645 -93538392 + B4A SINE B4 2 290 -2 6 1012 251 239 36 13 chr6 55979050 55979151 -93537886 - ORR1E LTR MaLR 0 379 270 6 1012 401 180 7 0 chr6 55980291 55980437 -93536600 + GA-rich Low_complexity Low_complexity 1 147 0 6 1012 22 0 0 0 chr6 55980643 55980665 -93536372 + GC_rich Low_complexity Low_complexity 1 22 0 6 1012 657 264 28 0 chr6 55980900 55981044 -93535993 - RSINE1 SINE B4 -15 150 3 6 1012 351 0 0 0 chr6 55982725 55982764 -93534273 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 1012 263 269 31 70 chr6 55982815 55982943 -93534094 + Charlie8 DNA MER1_type 39 161 -2267 6 1012 4317 118 98 4 chr6 55983750 55984457 -93532580 + Lx3B LINE L1 6197 6969 -4 6 1012 399 41 0 0 chr6 55984462 55984511 -93532526 + (TAA)n Simple_repeat Simple_repeat 1 49 0 6 1012 24 32 0 0 chr6 55986123 55986154 -93530883 + AT_rich Low_complexity Low_complexity 1 31 0 6 1012 378 0 0 0 chr6 55986157 55986199 -93530838 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1012 551 211 0 60 chr6 55986205 55986321 -93530716 - RSINE1 SINE B4 -54 111 3 7 1012 1231 65 19 12 chr6 55986664 55986989 -93530048 + (GAAA)n Simple_repeat Simple_repeat 1 327 0 7 1012 932 335 96 39 chr6 55987393 55987984 -93529053 - MTE-int LTR MaLR -950 630 6 7 1012 488 313 40 65 chr6 55988135 55988412 -93528625 - ORR1E LTR MaLR -86 273 4 7 1012 821 227 48 5 chr6 55990780 55990966 -93526071 - B3 SINE B2 -22 194 1 7 1012 462 79 0 0 chr6 55991738 55991801 -93525236 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 7 1012 1220 50 0 0 chr6 55991803 55991964 -93525073 - B2_Mm2 SINE B2 -34 161 1 7 1012 362 213 180 6 chr6 55993664 55993779 -93523258 + B3A SINE B2 1 131 -85 7 1012 206 167 71 0 chr6 55995148 55995190 -93521847 - MIRm SINE MIR -133 143 99 7 1012 251 38 56 19 chr6 55995485 55995539 -93521498 + (TTTTG)n Simple_repeat Simple_repeat 1 56 0 7 1012 1208 54 0 0 chr6 55995565 55995712 -93521325 - B1_Mus2 SINE Alu 0 147 1 7 1012 283 91 18 35 chr6 55995793 55995850 -93521187 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 7 1012 687 24 0 0 chr6 55996929 55997005 -93520032 + (GAA)n Simple_repeat Simple_repeat 2 77 0 7 1012 1266 90 0 0 chr6 55997005 55997183 -93519854 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 7 1012 687 24 0 0 chr6 55997183 55997189 -93519848 + (GAA)n Simple_repeat Simple_repeat 3 8 0 7 1012 2147 180 52 20 chr6 55997426 55997834 -93519203 - MTC LTR MaLR 0 421 1 7 1012 1286 84 39 0 chr6 55998381 55998399 -93518638 - B2_Mm1t SINE B2 -6 187 170 7 1012 405 0 0 0 chr6 55998399 55998444 -93518593 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 7 1012 1286 84 39 0 chr6 55998444 55998604 -93518433 - B2_Mm1t SINE B2 -24 169 3 7 1012 204 125 0 0 chr6 56000500 56000532 -93516505 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1012 2701 203 4 10 chr6 56000726 56001243 -93515794 - Lx LINE L1 -31 6623 6110 2 1012 1211 170 4 68 chr6 56001664 56001898 -93515139 - URR1B DNA MER1_type -6 219 1 3 1012 786 235 19 34 chr6 56002943 56003150 -93513887 - RMER10B LTR ERVL 0 398 195 4 1012 476 264 13 13 chr6 56003429 56003579 -93513458 + Lx7 LINE L1 7538 7687 -9 5 1012 423 141 0 32 chr6 56003590 56003685 -93513352 + GA-rich Low_complexity Low_complexity 2 93 0 6 1012 1101 96 0 17 chr6 56003688 56003869 -93513168 + (GGA)n Simple_repeat Simple_repeat 3 180 0 7 1012 1774 153 62 38 chr6 56005489 56005701 -93511336 + RMER17C LTR ERVK 1 225 -185 8 1012 603 51 0 0 chr6 56005701 56005780 -93511257 + (TC)n Simple_repeat Simple_repeat 2 80 0 9 1012 1774 153 62 38 chr6 56005780 56005967 -93511070 + RMER17C LTR ERVK 226 410 0 8 1012 3048 102 100 39 chr6 56008147 56008636 -93508401 + MURVY-LTR LTR ERV1 1 519 0 1 1012 226 305 135 56 chr6 56008701 56008902 -93508135 + Charlie2b DNA MER1_type 1725 1948 -834 1 1012 3733 148 12 85 chr6 56008902 56009559 -93507478 - RMER19C LTR ERVK -2 609 1 1 1012 226 305 135 56 chr6 56009559 56009645 -93507392 + Charlie2b DNA MER1_type 1949 2035 -747 1 1012 636 307 68 100 chr6 56009698 56009977 -93507060 + B4 SINE B4 17 286 -6 1 1012 189 0 0 0 chr6 56010009 56010030 -93507007 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1012 1750 169 98 20 chr6 56010100 56010456 -93506581 + ORR1C2 LTR MaLR 1 384 0 1 1012 264 30 0 0 chr6 56011195 56011228 -93505809 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 1012 739 147 0 33 chr6 56011881 56012001 -93505036 + MTC LTR MaLR 1 116 -305 1 1012 1368 197 96 11 chr6 56012129 56012411 -93504626 + MTC LTR MaLR 116 421 0 1 1012 1242 48 7 0 chr6 56012518 56012663 -93504374 + B1_Mus2 SINE Alu 2 147 0 1 1012 216 216 0 0 chr6 56013107 56013158 -93503879 + A-rich Low_complexity Low_complexity 1 51 0 1 1012 504 72 0 0 chr6 56013531 56013600 -93503437 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1012 230 247 48 36 chr6 56013638 56013722 -93503315 - RLTR47_MM LTR ERV1 -28 504 420 2 1012 7533 147 24 152 chr6 56013745 56014913 -93502124 - RLTR21 LTR ERVK 0 1572 478 2 1012 3274 75 0 0 chr6 56014913 56015314 -93501723 - L1Md_T LINE L1 0 6582 6182 2 1012 7533 147 24 152 chr6 56015314 56015476 -93501561 - RLTR21 LTR ERVK -1095 477 408 2 1012 1027 109 0 14 chr6 56015476 56015615 -93501422 + B1_Mm SINE Alu 2 138 -9 2 1012 7533 147 24 152 chr6 56015615 56016085 -93500952 - RLTR21 LTR ERVK -1165 407 1 2 1012 232 312 25 49 chr6 56016085 56016165 -93500872 - MLT1J LTR MaLR -99 413 336 2 1012 379 274 0 50 chr6 56016358 56016477 -93500560 + PB1D10 SINE Alu 5 117 0 2 1012 585 0 0 0 chr6 56016738 56016803 -93500234 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 1012 1088 264 47 0 chr6 56017442 56017696 -93499341 + ORR1D2 LTR MaLR 1 266 -104 2 1012 701 161 385 0 chr6 56017769 56017930 -93499107 + URR1A DNA MER1_type 2 224 -2 2 1012 244 326 59 40 chr6 56019337 56019508 -93497529 - MIRc SINE MIR -97 171 1 3 1012 283 141 31 0 chr6 56021146 56021210 -93495827 + CT-rich Low_complexity Low_complexity 1 66 0 3 1012 1021 212 27 22 chr6 56021404 56021626 -93495411 + Lx9 LINE L1 7252 7474 -170 3 1012 279 41 40 20 chr6 56021628 56021678 -93495359 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1012 428 215 37 9 chr6 56021680 56021788 -93495249 + Lx9 LINE L1 7531 7641 -3 3 1012 370 211 219 6 chr6 56022779 56022961 -93494076 + L1MC3 LINE L1 5219 5438 -2347 3 1012 1656 296 90 41 chr6 56022974 56023977 -93493060 + L1MC3 LINE L1 5811 6862 -923 3 1012 368 179 0 13 chr6 56023987 56024066 -93492971 + GA-rich Low_complexity Low_complexity 2 79 0 3 1012 546 280 145 22 chr6 56024067 56024473 -93492564 + L1MC3 LINE L1 7140 7595 -190 3 1012 713 299 77 19 chr6 56024858 56025117 -93491920 + B4A SINE B4 1 274 -18 3 1012 488 267 105 40 chr6 56025213 56025365 -93491672 + RSINE1 SINE B4 4 165 0 3 1012 26 30 0 0 chr6 56025371 56025404 -93491633 + AT_rich Low_complexity Low_complexity 1 33 0 3 1012 1123 218 10 0 chr6 56025543 56025740 -93491297 - B3 SINE B2 -17 199 1 3 1012 190 319 71 14 chr6 56026037 56026107 -93490930 - L2b LINE L2 -30 3345 3272 4 1012 183 42 0 0 chr6 56026909 56026933 -93490104 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1012 1046 53 0 0 chr6 56026940 56027072 -93489965 - B1_Mm SINE Alu 0 147 16 4 1012 1451 23 6 0 chr6 56027581 56027756 -93489281 + (TTC)n Simple_repeat Simple_repeat 2 177 0 4 1012 269 208 20 30 chr6 56027759 56027858 -93489179 + CT-rich Low_complexity Low_complexity 2 99 0 4 1012 254 295 0 0 chr6 56027878 56027939 -93489098 + CT-rich Low_complexity Low_complexity 4 64 0 4 1012 182 288 40 14 chr6 56029411 56029485 -93487552 - MER5B DNA MER1_type -100 78 3 4 1012 200 260 155 29 chr6 56031840 56031943 -93485094 + MIR SINE MIR 88 203 -59 4 1012 911 291 83 0 chr6 56033031 56033285 -93483752 + B4A SINE B4 1 275 -17 4 1012 328 266 114 9 chr6 56034095 56034134 -93482903 - MLT1A0 LTR MaLR -236 129 81 4 1012 4845 133 19 13 chr6 56034134 56034886 -93482151 + RMER6A LTR ERVK 1 756 0 4 1012 328 266 114 9 chr6 56034886 56034960 -93482077 - MLT1A0 LTR MaLR -285 80 5 4 1012 6544 34 1 0 chr6 56035546 56036274 -93480763 + L1Md_A LINE L1 5854 6582 0 5 1012 655 323 132 4 chr6 56036370 56036855 -93480182 - L1MB7 LINE L1 -28 6156 5610 5 1012 276 282 53 35 chr6 56036863 56036977 -93480060 - B1F2 SINE Alu 0 149 34 5 1012 428 333 76 13 chr6 56037004 56037452 -93479585 - L1MB7 LINE L1 -571 5607 5128 5 1012 959 63 55 5 chr6 56037996 56038133 -93478904 - B1_Mus1 SINE Alu -7 141 18 5 1012 32 43 0 0 chr6 56040090 56040136 -93476901 + AT_rich Low_complexity Low_complexity 1 46 0 5 1012 459 0 0 0 chr6 56040761 56040812 -93476225 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1012 677 102 9 0 chr6 56040916 56041024 -93476013 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 5 1012 210 158 0 0 chr6 56041031 56041069 -93475968 + CT-rich Low_complexity Low_complexity 2 39 0 5 1012 21 0 0 0 chr6 56042237 56042258 -93474779 + AT_rich Low_complexity Low_complexity 1 21 0 5 1012 384 309 11 0 chr6 56042444 56042538 -93474499 - PB1D10 SINE Alu -15 102 8 5 1012 1280 228 136 9 chr6 56042617 56042949 -93474088 - ORR1D1 LTR MaLR 0 374 1 6 1012 261 197 0 0 chr6 56043264 56043325 -93473712 + CT-rich Low_complexity Low_complexity 2 62 0 6 1012 1581 276 106 16 chr6 56043336 56043892 -93473145 - Lx7 LINE L1 -361 7335 6730 6 1012 522 267 120 27 chr6 56044433 56044583 -93472454 - Lx7 LINE L1 -962 6734 6571 6 1012 456 284 26 39 chr6 56044870 56045024 -93472013 + RLTR14 LTR ERV1 231 382 0 6 1012 1048 302 43 6 chr6 56045024 56045347 -93471690 - Lx8 LINE L1 -892 6581 6247 6 1012 2874 74 8 0 chr6 56045352 56045731 -93471306 - MTB LTR MaLR -18 382 1 6 1012 4011 202 68 41 chr6 56045732 56046741 -93470296 + ORR1A3-int LTR MaLR 39 1042 -328 6 1012 767 119 40 19 chr6 56046744 56046887 -93470150 + ORR1A3-int LTR MaLR 1244 1370 0 6 1012 242 246 16 0 chr6 56046868 56046929 -93470108 + ORR1A3 LTR MaLR 1 62 -312 6 1012 206 129 0 0 chr6 56047332 56047363 -93469674 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1012 682 184 23 121 chr6 56047539 56047712 -93469325 + ORR1D1 LTR MaLR 1 156 -218 6 1012 183 114 0 0 chr6 56047718 56047753 -93469284 + (TCTG)n Simple_repeat Simple_repeat 3 37 0 6 1012 313 171 11 18 chr6 56047768 56047833 -93469204 + ORR1D1 LTR MaLR 237 361 -23 6 1012 503 301 109 46 chr6 56047827 56048001 -93469036 - B4 SINE B4 -105 187 3 7 1012 461 17 17 0 chr6 56048263 56048321 -93468716 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 1012 359 353 51 65 chr6 56049360 56049775 -93467262 + L1ME4a LINE L1 5620 6028 -96 7 1012 186 71 0 0 chr6 56057893 56057921 -93459116 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1012 3497 261 61 16 chr6 56061827 56062332 -93454705 + Lx9 LINE L1 900 1434 -4413 7 1012 318 106 0 0 chr6 56062332 56062379 -93454658 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1012 3497 246 72 28 chr6 56062379 56063568 -93453469 + Lx9 LINE L1 1435 2671 -3176 7 1012 1922 201 60 67 chr6 56063568 56064086 -93452951 - RMER4B LTR ERVK 0 585 1 7 1012 3709 237 80 66 chr6 56064089 56064995 -93452042 + Lx9 LINE L1 2670 3661 -2186 7 1012 180 0 0 0 chr6 56064995 56065015 -93452022 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1012 3709 266 188 41 chr6 56065015 56067791 -93449246 + Lx9 LINE L1 3649 7178 -466 7 1012 553 275 93 54 chr6 56067806 56068194 -93448843 + Lx9 LINE L1 7242 7644 0 7 1012 180 176 29 0 chr6 56069642 56069676 -93447361 - L3 LINE CR1 -3572 917 883 7 1012 214 265 29 14 chr6 56070723 56070792 -93446245 + ID4 SINE ID 1 70 -13 7 1012 22 0 0 0 chr6 56071320 56071342 -93445695 + AT_rich Low_complexity Low_complexity 1 22 0 8 1012 792 235 134 0 chr6 56071342 56071529 -93445508 - B3 SINE B2 -4 212 1 8 1012 232 209 176 15 chr6 56071531 56071599 -93445438 - ID_B1 SINE B4 -2 222 144 8 1012 720 244 31 40 chr6 56072080 56072302 -93444735 + RLTR12B LTR ERVK 79 298 -230 8 1012 660 269 55 44 chr6 56072312 56072584 -93444453 + RLTR12B LTR ERVK 240 514 -14 8 1012 186 71 0 0 chr6 56072688 56072716 -93444321 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1012 198 312 10 59 chr6 56073393 56073430 -93443607 + MIR SINE MIR 113 150 -112 8 1012 1289 90 11 11 chr6 56073430 56073610 -93443427 - B2_Mm2 SINE B2 -15 180 1 8 1012 198 312 10 59 chr6 56073610 56073674 -93443363 + MIR SINE MIR 151 209 -53 8 1012 455 297 72 49 chr6 56073739 56074086 -93442951 - LTR37B LTR ERV1 0 468 114 8 1012 261 341 24 0 chr6 56075292 56075377 -93441660 + MER58B DNA MER1_type 255 341 0 8 1012 207 325 15 102 chr6 56075429 56075566 -93441471 + MIRc SINE MIR 23 147 -121 9 1012 392 274 32 0 chr6 56075642 56075737 -93441300 - B4 SINE B4 -4 288 191 9 1012 273 330 42 11 chr6 56076374 56076469 -93440568 + MER81 DNA AcHobo 14 111 -3 9 1012 24 0 0 0 chr6 56077512 56077536 -93439501 + AT_rich Low_complexity Low_complexity 1 24 0 9 1012 4256 21 0 0 chr6 56078675 56079157 -93437880 + LTRIS_Mm LTR ERV1 1 482 0 9 1012 246 128 0 0 chr6 56079453 56079492 -93437545 + (ATAGG)n Simple_repeat Simple_repeat 3 41 0 9 1012 2316 234 28 6 chr6 56080074 56080576 -93436461 + Lx6 LINE L1 6779 7291 -169 9 1012 3556 181 42 17 chr6 56081445 56082084 -93434953 - Lx5 LINE L1 -3 7047 6393 9 1012 579 243 185 6 chr6 56082673 56082851 -93434186 + B3 SINE B2 2 211 -5 9 1012 3319 43 0 2 chr6 56084466 56084863 -93432174 - MTA_Mm LTR MaLR 0 396 1 9 1012 731 11 11 0 chr6 56084878 56084966 -93432071 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 1012 325 279 168 78 chr6 56084966 56085145 -93431892 - B4 SINE B4 -5 287 93 1 1012 256 360 49 21 chr6 56085866 56086008 -93431029 + MLT1A LTR MaLR 2 147 -227 1 1012 220 27 0 51 chr6 56086817 56086856 -93430181 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1 1012 1016 251 89 35 chr6 56088477 56088841 -93428196 + MTE2a LTR MaLR 40 419 0 1 1012 230 372 32 11 chr6 56088847 56088942 -93428095 - MIR SINE MIR -160 102 6 1 1012 23 33 0 0 chr6 56091421 56091451 -93425586 + AT_rich Low_complexity Low_complexity 1 30 0 1 1012 2080 50 4 0 chr6 56091454 56091713 -93425324 - L1_Mus1 LINE L1 0 6567 6308 1 1012 710 157 0 14 chr6 56092922 56093064 -93423973 - L1Md_F2 LINE L1 0 6582 6443 1 1012 263 338 38 25 chr6 56093087 56093245 -93423792 + MIRb SINE MIR 50 209 -59 1 1012 201 154 0 0 chr6 56093248 56093287 -93423750 + A-rich Low_complexity Low_complexity 1 39 0 1 1012 10851 6 0 0 chr6 56093310 56094584 -93422453 + L1Md_A LINE L1 4313 5586 -297 1 1012 8806 16 0 0 chr6 56094584 56095580 -93421457 + L1Md_A LINE L1 5587 6582 0 1 1012 228 291 61 107 chr6 56096097 56096228 -93420809 + MTEa LTR MaLR 112 236 -123 1 1012 297 275 22 4 chr6 56096283 56096384 -93420653 + MTEa LTR MaLR 279 379 0 1 126 7664 77 8 24 chr6 56098009 56099049 -93417988 + RLTR13D5 LTR ERVK 1 1023 0 1 1013 304 333 116 87 chr6 56099339 56099684 -93417353 + MLT1A LTR MaLR 19 373 -1 1 1013 795 140 66 0 chr6 56101557 56101693 -93415344 + B2_Mm2 SINE B2 1 145 -50 1 1013 462 237 0 14 chr6 56101729 56101834 -93415203 + B3A SINE B2 5 106 -110 1 1013 261 0 0 0 chr6 56101838 56101867 -93415170 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1013 260 304 79 40 chr6 56102022 56102224 -93414813 - L1M5 LINE L1 -411 5768 5559 1 1013 558 71 0 0 chr6 56102260 56102344 -93414693 + (T)n Simple_repeat Simple_repeat 1 84 0 1 1013 34 24 0 0 chr6 56102653 56102694 -93414343 + AT_rich Low_complexity Low_complexity 1 41 0 1 1013 351 204 99 0 chr6 56102931 56103051 -93413986 - L1M5 LINE L1 -1152 4988 4847 1 1013 335 294 190 46 chr6 56103062 56103259 -93413778 + B4 SINE B4 5 220 -72 1 1013 988 129 6 6 chr6 56103259 56103430 -93413607 + (GGAA)n Simple_repeat Simple_repeat 3 173 0 1 1013 334 332 139 54 chr6 56103430 56103455 -93413582 + B4A SINE B4 221 245 -47 1 1013 252 271 10 30 chr6 56103677 56103776 -93413261 - L1M3 LINE L1 -303 5886 5790 1 1013 425 218 103 0 chr6 56103776 56103863 -93413174 + RSINE1 SINE B4 2 97 -68 1 1013 240 35 0 0 chr6 56104016 56104045 -93412992 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1013 1194 54 0 0 chr6 56104045 56104192 -93412845 - B1_Mus2 SINE Alu 0 147 1 1 1013 289 253 88 0 chr6 56104486 56104577 -93412460 - L1M5 LINE L1 -2047 4099 4001 1 1013 374 306 59 7 chr6 56104764 56104899 -93412138 - B1F2 SINE Alu -7 142 1 1 1013 761 307 5 0 chr6 56105053 56105271 -93411766 - ID_B1 SINE B4 -3 221 3 1 1013 401 357 36 42 chr6 56105319 56105652 -93411385 - MLT2B4 LTR ERVL -224 332 2 1 1013 384 310 137 9 chr6 56105874 56106313 -93410724 - L1M5 LINE L1 -2577 3569 3075 1 1013 189 354 62 23 chr6 56107752 56107882 -93409155 - MIRm SINE MIR -114 162 28 1 1013 512 341 32 16 chr6 56109566 56109751 -93407286 + MER5A DNA MER1_type 1 188 -1 1 1013 467 229 45 9 chr6 56110167 56110277 -93406760 + ORR1D2 LTR MaLR 42 155 -215 1 1013 1069 145 12 6 chr6 56110278 56110445 -93406592 + LTRIS3 LTR ERV1 345 512 0 1 1013 869 148 65 6 chr6 56110994 56111164 -93405873 + RMER16-int LTR ERVK 141 320 -5086 1 1013 4209 110 31 6 chr6 56111155 56111823 -93405214 + RMER16-int LTR ERVK 688 1372 -4034 1 1013 225 283 17 0 chr6 56111824 56111884 -93405153 + MTC-int LTR MaLR 915 975 -283 1 1013 3115 211 131 21 chr6 56111889 56112737 -93404300 + MuRRS4-int LTR ERV1 750 1695 -3368 1 1013 468 0 0 0 chr6 56112737 56112789 -93404248 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1013 3115 226 37 26 chr6 56112789 56112938 -93404099 + MuRRS4-int LTR ERV1 1696 1842 -3221 1 1013 7608 127 26 9 chr6 56112950 56115155 -93401882 + MuRRS4-int LTR ERV1 1936 4271 -792 1 1013 892 210 28 0 chr6 56115160 56115374 -93401663 + MuRRS4-int LTR ERV1 4802 5021 -42 1 1013 3347 114 8 2 chr6 56115375 56115857 -93401180 + LTRIS2 LTR ERV1 1 485 -79 1 1013 495 232 19 78 chr6 56115876 56116030 -93401007 + ORR1D2 LTR MaLR 226 370 0 1 1013 220 189 0 0 chr6 56116457 56116494 -93400543 + GA-rich Low_complexity Low_complexity 3 39 0 1 1013 592 99 10 19 chr6 56116494 56116597 -93400440 + (GAAA)n Simple_repeat Simple_repeat 4 105 0 1 1013 962 225 34 0 chr6 56117059 56117268 -93399769 - B3 SINE B2 0 216 1 1 1013 196 267 33 65 chr6 56117279 56117371 -93399666 - MIR SINE MIR -56 206 118 1 1013 508 240 93 8 chr6 56117563 56117696 -93399341 - B1F SINE Alu -2 147 5 1 1013 348 0 58 0 chr6 56117889 56117941 -93399096 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1 1013 267 103 0 0 chr6 56119191 56119230 -93397807 + (GGGAGA)n Simple_repeat Simple_repeat 4 42 0 1 1013 1201 77 36 62 chr6 56119266 56119308 -93397729 + B2_Mm2 SINE B2 2 43 -152 1 1013 1104 81 0 0 chr6 56119308 56119444 -93397593 + B1_Mus2 SINE Alu 2 137 -10 1 1013 191 36 36 0 chr6 56119444 56119472 -93397565 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1013 1201 77 36 62 chr6 56119472 56119621 -93397416 + B2_Mm2 SINE B2 44 188 -7 1 1013 893 279 149 4 chr6 56119624 56119865 -93397172 + B4 SINE B4 15 290 -2 1 1013 188 324 14 14 chr6 56120014 56120083 -93396954 + L2c LINE L2 3313 3381 -6 1 1013 622 288 75 16 chr6 56120238 56120425 -93396612 + B3A SINE B2 1 198 0 1 1013 270 372 20 27 chr6 56120797 56120946 -93396091 - MLT1A1 LTR MaLR -209 199 52 1 1013 348 295 120 66 chr6 56121015 56121316 -93395721 - L1M5 LINE L1 -1339 4807 4491 1 1013 286 323 47 16 chr6 56121782 56121911 -93395126 - MIRb SINE MIR -119 149 17 1 1013 372 379 6 36 chr6 56122834 56123001 -93394036 + RSINE1 SINE B4 4 165 0 1 1013 225 278 103 89 chr6 56125243 56125456 -93391581 - Charlie24 DNA MER1_type -1559 891 676 1 1013 216 0 0 0 chr6 56128651 56128675 -93388362 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1013 444 19 0 0 chr6 56128675 56128728 -93388309 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1013 23 33 0 0 chr6 56129949 56129979 -93387058 + AT_rich Low_complexity Low_complexity 1 30 0 1 1013 396 55 0 0 chr6 56130368 56130423 -93386614 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1013 486 0 0 0 chr6 56130423 56130476 -93386561 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1013 36422 13 2 7 chr6 56133564 56138972 -93378065 + L1Md_A LINE L1 208 5586 -297 1 1013 8902 12 0 0 chr6 56138972 56139968 -93377069 + L1Md_A LINE L1 5587 6582 0 1 1013 221 0 0 33 chr6 56140200 56140230 -93376807 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1013 562 224 267 0 chr6 56140406 56140571 -93376466 + B3 SINE B2 3 211 -5 1 1013 5723 58 0 6 chr6 56142108 56142823 -93374214 + L1_Mus1 LINE L1 5855 6565 -2 1 1013 1084 267 65 19 chr6 56143148 56143579 -93373458 + Lx7 LINE L1 5715 6165 -1531 1 1013 1117 73 0 14 chr6 56143579 56143857 -93373180 + (CA)n Simple_repeat Simple_repeat 1 273 0 1 1013 2299 269 31 58 chr6 56143863 56144671 -93372366 + Lx7 LINE L1 6515 7300 -396 1 1013 585 0 0 0 chr6 56144674 56144739 -93372298 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 1 1013 321 26 0 0 chr6 56144739 56144776 -93372261 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 1 1013 217 232 14 28 chr6 56144837 56144908 -93372129 + T-rich Low_complexity Low_complexity 3 72 0 1 1013 465 19 0 0 chr6 56144908 56144962 -93372075 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1013 27 29 0 0 chr6 56145026 56145060 -93371977 + AT_rich Low_complexity Low_complexity 1 34 0 1 1013 566 93 0 11 chr6 56145089 56145176 -93371861 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 1 1013 603 0 0 0 chr6 56145595 56145662 -93371375 + (GGAGA)n Simple_repeat Simple_repeat 3 69 0 1 1013 259 312 0 0 chr6 56145764 56145828 -93371209 + polypurine Low_complexity Low_complexity 4 67 0 1 1013 477 0 0 0 chr6 56147148 56147201 -93369836 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1013 444 19 0 0 chr6 56147201 56147253 -93369784 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1013 518 312 69 0 chr6 56148284 56148502 -93368535 + MER2 DNA MER2_type 87 319 -26 1 1013 303 262 96 15 chr6 56149145 56149343 -93367694 + L1M5 LINE L1 2826 3039 -3107 1 1013 248 196 74 56 chr6 56149590 56149698 -93367339 + L1M5 LINE L1 3410 3519 -2627 1 1013 413 219 44 79 chr6 56149839 56149953 -93367084 + MT2B LTR ERVL 148 257 -344 1 1013 1050 52 0 0 chr6 56149862 56149998 -93367039 + B1_Mus2 SINE Alu 12 147 0 1 1013 219 152 0 0 chr6 56149999 56150045 -93366992 + A-rich Low_complexity Low_complexity 1 46 0 1 1013 315 282 164 14 chr6 56150047 56150266 -93366771 + L1M5 LINE L1 3812 4063 -2083 1 1013 180 0 0 0 chr6 56150386 56150406 -93366631 + (TGG)n Simple_repeat Simple_repeat 3 22 0 1 1013 353 320 20 20 chr6 56150616 56150718 -93366319 + RSINE1 SINE B4 58 159 -6 1 1013 323 310 59 59 chr6 56150784 56151106 -93365931 + L1M5 LINE L1 4428 4749 -1397 1 1013 474 296 12 30 chr6 56151244 56151408 -93365629 + GA-rich Low_complexity Low_complexity 2 162 0 1 1013 210 171 0 0 chr6 56152069 56152110 -93364927 + GA-rich Low_complexity Low_complexity 4 44 0 1 1013 189 132 0 0 chr6 56152110 56152148 -93364889 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1013 597 333 45 52 chr6 56152890 56152952 -93364085 - B4 SINE B4 -1 291 238 1 1013 717 12 0 0 chr6 56152952 56153034 -93364003 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1 1013 597 333 45 52 chr6 56153034 56153262 -93363775 - B4 SINE B4 -55 237 3 1 1013 261 0 0 0 chr6 56153489 56153518 -93363519 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1013 340 216 21 0 chr6 56153688 56153785 -93363252 + (CATA)n Simple_repeat Simple_repeat 3 101 0 1 1013 882 283 99 7 chr6 56153787 56154262 -93362775 - Lx8 LINE L1 -1553 5920 5371 1 1013 419 265 19 3 chr6 56154594 56154738 -93362299 + Lx7 LINE L1 7559 7689 -7 1 1013 1211 41 7 0 chr6 56154872 56155017 -93362020 + B1_Mm SINE Alu 2 147 0 1 1013 186 43 0 0 chr6 56155017 56155040 -93361997 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1013 672 48 0 0 chr6 56155226 56155310 -93361727 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 1013 318 282 76 36 chr6 56155376 56155626 -93361411 + ALINE LINE RTE 249 508 -109 1 1013 199 82 39 39 chr6 56155840 56155891 -93361146 + A-rich Low_complexity Low_complexity 1 51 0 1 1013 2958 151 55 67 chr6 56157039 56157585 -93359452 + L1Md_F2 LINE L1 438 1082 -5556 1 1013 3248 68 0 7 chr6 56157585 56158014 -93359023 + L1Md_F2 LINE L1 6156 6581 -1 2 1013 30606 73 11 9 chr6 56158014 56162553 -93354484 + L1Md_F2 LINE L1 1062 5585 -298 1 1013 6921 105 3 7 chr6 56162554 56163554 -93353483 + L1Md_F2 LINE L1 5587 6582 0 1 1013 539 301 87 68 chr6 56163590 56164158 -93352879 + L1_Rod LINE L1 1625 2178 -3669 2 1013 1261 79 50 17 chr6 56164158 56164338 -93352699 + B2_Mm2 SINE B2 2 187 -8 2 1013 539 301 87 68 chr6 56164338 56164828 -93352209 + L1_Rod LINE L1 2179 2703 -3144 2 1013 313 260 0 25 chr6 56164837 56164916 -93352121 + L1MA4A LINE L1 2790 2866 -3277 2 1013 180 0 0 0 chr6 56164942 56164962 -93352075 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2 1013 2221 105 12 3 chr6 56164962 56165288 -93351749 - Lx3A LINE L1 -15 6966 6638 2 1013 4828 88 13 8 chr6 56165288 56165997 -93351040 + Lx3_Mus LINE L1 5926 6637 -372 2 1013 482 250 6 59 chr6 56166047 56166217 -93350820 + L1MA4A LINE L1 4878 5038 -1105 2 1013 585 282 6 0 chr6 56166235 56166391 -93350646 + Lx8 LINE L1 6347 6503 -970 2 1013 355 286 71 0 chr6 56166399 56166567 -93350470 + L1MA4A LINE L1 5745 5924 -379 2 1013 22 0 0 0 chr6 56166769 56166791 -93350246 + AT_rich Low_complexity Low_complexity 1 22 0 2 1013 595 159 51 0 chr6 56168357 56168495 -93348542 + Lx2 LINE L1 5964 6108 -889 2 1013 1857 181 65 11 chr6 56168495 56168923 -93348114 + RMER17C LTR ERVK 1 436 -373 2 1013 5364 130 13 12 chr6 56168925 56169772 -93347265 + Lx2 LINE L1 6148 6995 -2 2 1013 521 30 15 0 chr6 56169775 56169842 -93347195 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 1013 226 316 26 9 chr6 56171189 56171304 -93345733 + GA-rich Low_complexity Low_complexity 2 118 0 2 1013 441 0 0 0 chr6 56171679 56171728 -93345309 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1013 238 345 64 23 chr6 56172000 56172172 -93344865 + MLT1N2 LTR MaLR 375 553 -9 2 1013 2542 285 38 37 chr6 56172247 56173705 -93343332 + L1M2 LINE L1 2701 4159 -1984 2 1013 4880 73 28 0 chr6 56173754 56174399 -93342638 - L1_Mus2 LINE L1 0 6566 5904 2 1013 20649 158 19 106 chr6 56174403 56175366 -93341671 - L1Md_F LINE L1 -93 5784 4943 2 1013 1111 186 359 41 chr6 56175366 56175705 -93341332 + LTRIS5 LTR ERV1 1 447 0 2 1013 20649 158 19 106 chr6 56175705 56176104 -93340933 - L1Md_F LINE L1 -93 4942 4593 2 1013 518 37 49 0 chr6 56176104 56176185 -93340852 + L1Md_F3 LINE L1 6486 6570 -14 2 1013 20649 102 22 65 chr6 56176185 56177109 -93339928 - L1Md_F LINE L1 -1291 4592 3724 2 1013 1229 48 0 0 chr6 56177109 56177256 -93339781 - B1_Mus2 SINE Alu 0 147 1 2 1013 20649 146 35 78 chr6 56177256 56180713 -93336324 - L1Md_F LINE L1 -2160 3723 260 2 1013 336 234 76 99 chr6 56180702 56180846 -93336191 + L1M2 LINE L1 4198 4335 -1805 2 1013 615 301 55 0 chr6 56180846 56181045 -93335992 + B3 SINE B2 1 210 -6 2 1013 282 234 76 99 chr6 56181045 56181071 -93335966 + L1M2 LINE L1 4336 4364 -1776 2 1013 1712 289 52 5 chr6 56181090 56181834 -93335203 + L1_Mur3 LINE L1 4282 5060 -820 2 1013 328 357 0 0 chr6 56183003 56183132 -93333905 + (TG)n Simple_repeat Simple_repeat 2 130 0 2 1013 807 11 0 0 chr6 56183651 56183743 -93333294 + (TTAGGG)n Simple_repeat Simple_repeat 2 93 0 2 1013 405 54 0 0 chr6 56183860 56183916 -93333121 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1013 189 0 0 0 chr6 56183918 56183939 -93333098 + (CCA)n Simple_repeat Simple_repeat 1 21 0 2 1013 411 21 0 0 chr6 56185600 56185648 -93331389 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1013 21 0 0 0 chr6 56186088 56186109 -93330928 + AT_rich Low_complexity Low_complexity 1 21 0 2 1013 27 49 0 0 chr6 56187411 56187452 -93329585 + AT_rich Low_complexity Low_complexity 1 41 0 2 1013 907 281 0 0 chr6 56187452 56187651 -93329386 - B3 SINE B2 -16 200 2 2 1013 1394 46 0 0 chr6 56189374 56189548 -93327489 - L1Md_T LINE L1 -1 6581 6408 2 1013 419 246 185 38 chr6 56189847 56190058 -93326979 - Lx8 LINE L1 -3 7470 7229 2 1013 37365 60 1 22 chr6 56190525 56197456 -93319581 - L1Md_T LINE L1 0 6582 99 2 1013 2040 215 5 20 chr6 56197470 56198689 -93318348 - L1Md_F LINE L1 -5923 596 2 2 1013 253 333 56 0 chr6 56198934 56199024 -93318013 - MER2 DNA MER2_type 0 345 251 2 1013 806 281 92 15 chr6 56199028 56199299 -93317738 + B4A SINE B4 1 292 0 2 1013 656 279 67 13 chr6 56199312 56199537 -93317500 - MER2 DNA MER2_type -71 274 38 2 1013 216 0 0 0 chr6 56199808 56199832 -93317205 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2 1013 189 0 0 0 chr6 56200482 56200503 -93316534 + (TC)n Simple_repeat Simple_repeat 1 21 0 2 1013 210 260 0 75 chr6 56201434 56201567 -93315470 + (CATAT)n Simple_repeat Simple_repeat 3 125 0 2 1013 784 280 5 29 chr6 56201719 56201925 -93315112 + B3 SINE B2 16 216 0 2 1013 309 315 68 27 chr6 56202313 56202460 -93314577 - RSINE1 SINE B4 -10 155 3 2 1013 186 189 0 0 chr6 56203092 56203129 -93313908 + (CATA)n Simple_repeat Simple_repeat 4 40 0 2 1013 1356 82 0 35 chr6 56203567 56203761 -93313276 - MTB LTR MaLR -26 374 188 2 1013 6063 93 14 0 chr6 56203761 56204606 -93312431 - L1_Mus3 LINE L1 -3 6635 5779 2 1013 6559 38 11 0 chr6 56204613 56205436 -93311601 - L1Md_F2 LINE L1 -21 6561 5730 2 1013 293 278 184 4 chr6 56205596 56205863 -93311174 - L1MCb LINE L1 -5348 1403 1089 2 1013 457 342 97 24 chr6 56205873 56206253 -93310784 - L1MCb LINE L1 -5082 963 556 2 1013 285 75 0 0 chr6 56206301 56206341 -93310696 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1013 1919 25 4 0 chr6 56206385 56206620 -93310417 + L1Md_F2 LINE L1 5351 5586 -297 2 1013 8289 34 2 5 chr6 56206620 56207619 -93309418 + L1Md_F2 LINE L1 5587 6582 0 2 1013 667 246 39 0 chr6 56207703 56207903 -93309134 + Lx6 LINE L1 7246 7453 -7 2 1013 558 0 0 0 chr6 56207903 56207965 -93309072 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 2 1013 299 244 105 0 chr6 56208523 56208609 -93308428 - Charlie2a DNA MER1_type -1769 1092 998 2 1013 366 316 9 17 chr6 56209323 56209439 -93307598 - B3A SINE B2 0 198 84 2 1013 252 286 91 0 chr6 56209466 56209543 -93307494 - MTB LTR MaLR -295 84 1 2 1013 227 199 108 17 chr6 56209879 56209951 -93307086 + MIRc SINE MIR 52 144 -124 2 1013 886 94 0 0 chr6 56211098 56211215 -93305822 + B2_Mm2 SINE B2 1 117 -78 2 1013 235 0 0 54 chr6 56211280 56211317 -93305720 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1013 1398 251 97 60 chr6 56211857 56212623 -93304414 - L1_Mur3 LINE L1 -2304 3576 2783 2 1013 2079 309 74 32 chr6 56212630 56213471 -93303566 + Lx8 LINE L1 6292 7175 -298 2 1013 1267 198 132 38 chr6 56213471 56213813 -93303224 - ORR1D1 LTR MaLR 0 374 1 2 1013 2079 309 74 32 chr6 56213813 56213894 -93303143 + Lx8 LINE L1 7176 7252 -221 2 1013 1187 201 74 11 chr6 56214315 56214443 -93302594 - RMER1B Other Other -6 1060 920 2 1013 384 22 0 0 chr6 56214443 56214488 -93302549 + (CATA)n Simple_repeat Simple_repeat 2 46 0 2 1013 1187 201 74 11 chr6 56214488 56214630 -93302407 - RMER1B Other Other -147 919 773 2 1013 2324 82 3 3 chr6 56214631 56214950 -93302087 + ORR1A2 LTR MaLR 1 319 -8 2 1013 370 172 0 0 chr6 56214966 56215030 -93302007 - RMER1B Other Other -301 765 702 2 1013 22 70 0 0 chr6 56215228 56215271 -93301766 + AT_rich Low_complexity Low_complexity 1 43 0 2 1013 22 0 0 0 chr6 56217272 56217294 -93299743 + AT_rich Low_complexity Low_complexity 1 22 0 2 1013 239 336 51 60 chr6 56217587 56217704 -93299333 - MIRb SINE MIR -17 251 136 2 1013 896 230 23 23 chr6 56217774 56217992 -93299045 + MTD LTR MaLR 6 223 -196 2 1013 240 59 0 0 chr6 56220054 56220088 -93296949 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1013 319 374 109 43 chr6 56220627 56221066 -93295971 + LTR33 LTR ERVL 46 513 -2 2 1013 361 294 54 36 chr6 56221929 56222095 -93294942 + AmnSINE1 SINE SINE 215 383 -192 2 1013 634 306 142 61 chr6 56223280 56223639 -93293398 + MLT1B LTR MaLR 3 390 0 2 1013 852 137 25 0 chr6 56224301 56224462 -93292575 + CT-rich Low_complexity Low_complexity 2 166 0 2 1013 447 238 9 54 chr6 56224462 56224573 -93292464 + MTD LTR MaLR 13 118 -301 2 1013 249 281 11 0 chr6 56224753 56224842 -93292195 + L1MB8 LINE L1 6034 6123 -55 2 1013 2819 177 15 24 chr6 56225597 56226129 -93290908 + Lx4A LINE L1 6516 7042 -16 2 1013 250 161 0 0 chr6 56226140 56226196 -93290841 + Lx6 LINE L1 1165 1220 -6508 2 1013 9062 200 112 80 chr6 56226182 56227482 -93289555 + Lx6 LINE L1 1087 2490 -3387 2 1013 1283 57 0 0 chr6 56227482 56227639 -93289398 - B2_Mm2 SINE B2 -37 158 2 2 1013 9062 200 112 80 chr6 56227639 56229283 -93287754 + Lx6 LINE L1 2491 4268 -1609 2 1013 1002 112 0 0 chr6 56229283 56229461 -93287576 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 2 1013 9062 201 117 84 chr6 56229461 56229827 -93287210 + Lx6 LINE L1 4269 4686 -1191 2 126 2298 254 96 27 chr6 56229824 56229914 -93287123 + Lx6 LINE L1 5648 5733 -1727 2 1014 252 0 0 0 chr6 56229914 56229942 -93287095 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1014 641 47 0 12 chr6 56229942 56230027 -93287010 + (TA)n Simple_repeat Simple_repeat 2 86 0 2 1014 2298 254 96 27 chr6 56230027 56230725 -93286312 + Lx6 LINE L1 5734 6491 -969 2 1014 1272 38 16 21 chr6 56230727 56230916 -93286121 - L1Md_F3 LINE L1 0 6584 6397 2 1014 3036 252 78 39 chr6 56230917 56231410 -93285627 + Lx6 LINE L1 6487 7010 -450 2 1014 1714 141 261 45 chr6 56231410 56231789 -93285248 + RMER6B LTR ERVK 1 461 0 2 1014 3036 252 78 39 chr6 56231789 56232213 -93284824 + Lx6 LINE L1 7011 7440 -20 2 1014 263 238 0 16 chr6 56232214 56232278 -93284759 + (TCG)n Simple_repeat Simple_repeat 2 64 0 2 1014 333 204 89 89 chr6 56232285 56232409 -93284628 - MLT1A1 LTR MaLR -270 138 15 2 1014 351 352 66 15 chr6 56232522 56232718 -93284319 - MIR SINE MIR -44 218 13 2 1014 2135 117 139 11 chr6 56233017 56233390 -93283647 - MTC LTR MaLR 0 421 1 2 1014 30 0 0 0 chr6 56233641 56233671 -93283366 + AT_rich Low_complexity Low_complexity 1 30 0 2 1014 22 56 0 0 chr6 56233710 56233746 -93283291 + AT_rich Low_complexity Low_complexity 1 36 0 2 1014 553 284 29 82 chr6 56234056 56234263 -93282774 - MLT1D LTR MaLR -293 212 17 2 1014 405 300 0 0 chr6 56234290 56234370 -93282667 - ID4_ SINE ID -2 81 2 2 1014 464 283 157 57 chr6 56234427 56234689 -93282348 + B4 SINE B4 3 290 -2 2 1014 1089 272 142 8 chr6 56234705 56235072 -93281965 - MTD LTR MaLR -3 416 1 2 1014 364 316 57 7 chr6 56235201 56235341 -93281696 + B1F SINE Alu 1 147 -2 2 1014 216 97 0 0 chr6 56235819 56235850 -93281187 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1014 183 333 25 25 chr6 56236334 56236414 -93280623 - L2b LINE L2 -7 3368 3289 2 1014 249 270 0 0 chr6 56236548 56236611 -93280426 - MER46C DNA MER2_type 0 338 276 2 1014 27 0 0 0 chr6 56236825 56236852 -93280185 + AT_rich Low_complexity Low_complexity 1 27 0 2 1014 287 299 144 0 chr6 56237406 56237503 -93279534 + B3A SINE B2 17 127 -71 2 1014 348 266 27 17 chr6 56238527 56238641 -93278396 - MLT1D LTR MaLR -19 486 417 2 1014 247 307 136 56 chr6 56238809 56238971 -93278066 + MLT1C LTR MaLR 214 388 -79 2 1014 187 217 63 48 chr6 56239638 56239701 -93277336 + L3 LINE CR1 3493 3556 -933 3 1014 1611 163 17 104 chr6 56240909 56241314 -93275723 - RMER1C Other Other 0 1342 973 3 1014 193 291 109 17 chr6 56242220 56242339 -93274698 + MIRb SINE MIR 118 247 -21 3 1014 1638 189 59 22 chr6 56242395 56242753 -93274284 + ORR1D1 LTR MaLR 4 374 0 3 1014 36372 30 0 0 chr6 56243298 56250021 -93267016 - L1Md_T LINE L1 0 6585 1 3 1014 338 161 10 31 chr6 56250451 56250547 -93266490 + (TATATG)n Simple_repeat Simple_repeat 1 94 0 3 1014 319 227 53 0 chr6 56250775 56250850 -93266187 - MLT1A1 LTR MaLR -12 396 318 3 1014 503 171 0 9 chr6 56252687 56252793 -93264244 + (CA)n Simple_repeat Simple_repeat 2 106 0 3 1014 1882 264 126 24 chr6 56253181 56253894 -93263143 - RLTR40 LTR ERVK -31 786 1 3 1014 332 79 206 0 chr6 56253930 56253993 -93263044 + Lx5 LINE L1 6380 6455 -595 3 1014 1471 27 53 0 chr6 56254003 56254190 -93262847 - L1_Mus1 LINE L1 0 6567 6371 3 1014 2930 224 18 5 chr6 56254175 56254781 -93262256 + Lx5 LINE L1 6437 7050 0 3 1014 276 30 0 0 chr6 56255334 56255367 -93261670 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1014 180 394 43 24 chr6 56255405 56255569 -93261468 + L2c LINE L2 3212 3378 -9 3 1014 240 293 80 109 chr6 56256464 56256602 -93260435 - L2a LINE L2 0 3426 3293 3 1014 459 268 48 82 chr6 56256745 56256794 -93260243 - B3 SINE B2 -14 202 164 3 1014 415 112 25 0 chr6 56256794 56256874 -93260163 + (TG)n Simple_repeat Simple_repeat 1 82 0 3 1014 459 268 48 82 chr6 56256874 56257031 -93260006 - B3 SINE B2 -53 163 3 3 1014 490 340 13 34 chr6 56257259 56257408 -93259629 + RSINE1 SINE B4 3 148 -17 3 1014 268 295 48 60 chr6 56257517 56257600 -93259437 + RSINE1 SINE B4 3 84 -81 3 1014 677 290 65 6 chr6 56257528 56257698 -93259339 + B3 SINE B2 13 192 -24 3 1014 185 163 20 0 chr6 56257716 56257765 -93259272 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 3 1014 1220 41 0 0 chr6 56257772 56257919 -93259118 + B1_Mus2 SINE Alu 1 147 0 3 1014 22 0 0 0 chr6 56258828 56258850 -93258187 + AT_rich Low_complexity Low_complexity 1 22 0 3 1014 675 302 25 123 chr6 56259268 56259544 -93257493 - B4 SINE B4 -2 290 42 3 1014 1479 177 274 20 chr6 56259549 56259885 -93257152 - MTC LTR MaLR 0 421 1 3 1014 3887 197 142 33 chr6 56260934 56261867 -93255170 + ORR1D1-int LTR MaLR 335 1368 -2 3 1014 996 257 63 8 chr6 56261868 56262182 -93254855 + ORR1D1 LTR MaLR 1 353 -6 3 1014 215 265 20 0 chr6 56262330 56262379 -93254658 + L2a LINE L2 3364 3413 -13 3 1014 27 62 0 0 chr6 56262392 56262440 -93254597 + AT_rich Low_complexity Low_complexity 1 48 0 3 1014 483 302 80 31 chr6 56262925 56263250 -93253787 + L1MEc LINE L1 47 387 -6013 3 1014 545 304 62 31 chr6 56263414 56263767 -93253270 + L1MEc LINE L1 4197 4560 -1759 3 1014 899 183 76 12 chr6 56264801 56264972 -93252065 + MTC LTR MaLR 3 184 -237 3 1014 269 279 34 34 chr6 56264972 56265061 -93251976 + MTC LTR MaLR 332 420 -1 3 1014 412 290 66 16 chr6 56265137 56265442 -93251595 + L1_Mur3 LINE L1 1583 1902 -3978 3 1014 1739 277 62 12 chr6 56265477 56266240 -93250797 + L1_Mur3 LINE L1 3141 3941 -1939 3 1014 1225 213 5 9 chr6 56266250 56266473 -93250564 + MTC LTR MaLR 5 226 -195 3 1014 852 275 0 0 chr6 56266469 56266651 -93250386 + MTC LTR MaLR 173 354 -67 3 1014 2342 228 66 28 chr6 56266652 56267437 -93249600 + L1_Mur3 LINE L1 3969 4783 -1097 3 1014 1906 197 95 82 chr6 56267441 56267967 -93249070 - MT2A LTR ERVL 0 533 1 3 1014 383 239 99 43 chr6 56267971 56268133 -93248904 + L1M2 LINE L1 4818 4988 -1155 3 1014 1194 297 78 7 chr6 56268169 56268633 -93248404 + Lx8 LINE L1 6298 6794 -679 3 1014 2775 147 17 2 chr6 56268651 56269068 -93247969 + Lx4A LINE L1 6636 7058 0 3 1014 559 252 216 10 chr6 56269086 56269294 -93247743 + B4A SINE B4 1 251 -41 3 1014 589 269 0 44 chr6 56269536 56269672 -93247365 - B1F2 SINE Alu -1 148 19 3 1014 1167 50 0 0 chr6 56269734 56269875 -93247162 - B1_Mus2 SINE Alu -6 141 1 3 1014 314 386 0 45 chr6 56270146 56270279 -93246758 + ID_B1 SINE B4 84 210 -14 3 1014 189 0 0 0 chr6 56270460 56270481 -93246556 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1014 195 42 0 0 chr6 56270485 56270509 -93246528 + (TTGG)n Simple_repeat Simple_repeat 3 26 0 3 1014 887 183 114 20 chr6 56270529 56270730 -93246307 + ORR1C1 LTR MaLR 1 220 -158 3 1014 6920 103 16 9 chr6 56270771 56271828 -93245209 + Lx LINE L1 5587 6650 -4 3 1014 484 206 56 9 chr6 56272100 56272208 -93244829 - B1F SINE Alu -36 113 1 3 1014 214 300 0 0 chr6 56274043 56274103 -93242934 + GA-rich Low_complexity Low_complexity 3 62 0 3 1014 451 265 126 22 chr6 56275617 56275887 -93241150 - Lx9 LINE L1 -4 7640 7343 3 1014 216 0 0 0 chr6 56277215 56277239 -93239798 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 3 1014 733 172 171 7 chr6 56277451 56277597 -93239440 - URR1A DNA MER1_type -55 171 2 3 1014 208 70 0 44 chr6 56278008 56278053 -93238984 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1014 557 184 46 33 chr6 56278614 56278766 -93238271 - MTD LTR MaLR 0 419 266 3 1014 381 316 58 6 chr6 56278781 56278937 -93238100 + ORR1D1 LTR MaLR 18 181 -193 3 1014 666 181 0 0 chr6 56278939 56279082 -93237955 + CT-rich Low_complexity Low_complexity 24 166 0 3 1014 297 0 0 0 chr6 56279082 56279115 -93237922 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1014 666 181 0 0 chr6 56279115 56279137 -93237900 + polypyrimidine Low_complexity Low_complexity 2 23 0 3 1014 354 273 123 12 chr6 56279139 56279302 -93237735 + ORR1D1 LTR MaLR 197 377 -2 3 1014 181 163 18 109 chr6 56280450 56280505 -93236532 + L3 LINE CR1 2176 2225 -2264 3 1014 2262 91 26 9 chr6 56280918 56281261 -93235776 + Lx LINE L1 6302 6650 -4 3 1014 1057 122 35 0 chr6 56281262 56281434 -93235603 - RLTR25A LTR ERVK -923 180 3 3 1014 296 209 9 35 chr6 56283173 56283287 -93233750 + CT-rich Low_complexity Low_complexity 5 115 0 3 1014 267 325 25 58 chr6 56283320 56283441 -93233596 - PB1D9 SINE Alu -2 118 2 3 1014 793 304 28 21 chr6 56283532 56283814 -93233223 - B4A SINE B4 -4 288 5 3 1014 243 200 0 0 chr6 56284028 56284073 -93232964 - MER20 DNA MER1_type -143 76 32 3 1014 198 150 0 0 chr6 56284251 56284291 -93232746 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 3 1014 555 322 63 17 chr6 56285419 56285593 -93231444 + ID_B1 SINE B4 39 220 -4 3 1014 354 261 34 11 chr6 56285680 56285769 -93231268 - MTC LTR MaLR -8 413 323 3 1014 632 271 21 0 chr6 56286463 56286603 -93230434 + RSINE1 SINE B4 1 143 -22 3 1014 206 213 0 0 chr6 56286640 56286687 -93230350 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1014 257 27 0 51 chr6 56287300 56287339 -93229698 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1014 401 248 47 0 chr6 56287432 56287561 -93229476 - Lx9 LINE L1 -7 7637 7503 3 1014 189 107 0 0 chr6 56287998 56288026 -93229011 + (TCTCCC)n Simple_repeat Simple_repeat 2 29 0 3 1014 278 367 144 0 chr6 56290789 56290928 -93226109 + RSINE1 SINE B4 1 159 -6 3 1014 238 36 0 0 chr6 56290933 56290961 -93226076 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1014 528 200 0 0 chr6 56290961 56291081 -93225956 + (TA)n Simple_repeat Simple_repeat 1 120 0 3 1014 364 302 71 36 chr6 56291389 56291583 -93225454 + MLT1H1 LTR MaLR 83 283 -308 3 1014 238 232 45 116 chr6 56291674 56291786 -93225251 + MLT1H1 LTR MaLR 402 505 -44 3 1014 29 28 0 0 chr6 56291879 56291915 -93225122 + AT_rich Low_complexity Low_complexity 1 36 0 3 1014 1788 76 8 0 chr6 56292478 56292715 -93224322 + L1_Mus1 LINE L1 6329 6567 0 3 1014 491 243 42 28 chr6 56293997 56294141 -93222896 + B1F SINE Alu 4 149 0 3 1014 405 0 0 0 chr6 56295631 56295676 -93221361 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1014 200 316 110 20 chr6 56295958 56296058 -93220979 + MIRc SINE MIR 69 177 -91 3 1014 2458 85 3 0 chr6 56296307 56296635 -93220402 + L1_Mus4 LINE L1 6304 6632 -4 3 1014 239 250 174 9 chr6 56297693 56297802 -93219235 + L2c LINE L2 3101 3227 -160 3 1014 198 222 0 0 chr6 56298756 56298810 -93218227 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1014 22 0 0 0 chr6 56299014 56299036 -93218001 + AT_rich Low_complexity Low_complexity 1 22 0 3 1014 186 43 0 0 chr6 56299469 56299492 -93217545 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1014 238 294 28 42 chr6 56301229 56301300 -93215737 + B3 SINE B2 101 170 -46 3 1014 602 252 0 0 chr6 56301315 56301434 -93215603 - RSINE1 SINE B4 -45 120 2 3 1014 525 154 0 0 chr6 56301659 56301750 -93215287 + A-rich Low_complexity Low_complexity 1 91 0 3 1014 234 0 0 0 chr6 56301776 56301802 -93215235 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1014 180 222 44 73 chr6 56302701 56302769 -93214268 + L3b LINE CR1 197 262 -220 3 1014 194 379 82 34 chr6 56304984 56305276 -93211761 + L2c LINE L2 3052 3357 -30 3 1014 408 20 0 0 chr6 56305782 56305831 -93211206 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1014 437 305 0 0 chr6 56306273 56306378 -93210659 + ID_B1 SINE B4 103 207 -17 3 1014 190 224 68 17 chr6 56307883 56307942 -93209095 + MIRm SINE MIR 201 262 -14 3 1014 2551 37 0 0 chr6 56308142 56308440 -93208597 + L1_Mus1 LINE L1 6268 6565 -2 3 1014 27 0 0 0 chr6 56308440 56308467 -93208570 + AT_rich Low_complexity Low_complexity 1 27 0 3 1014 465 19 0 0 chr6 56308979 56309033 -93208004 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1014 369 0 0 0 chr6 56309033 56309073 -93207964 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1014 345 24 0 0 chr6 56309675 56309717 -93207320 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1014 540 81 0 0 chr6 56312628 56312702 -93204335 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1014 341 136 0 15 chr6 56314661 56314728 -93202309 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1014 413 253 160 25 chr6 56315071 56315296 -93201741 + L1MA4A LINE L1 5423 5714 -457 4 1014 3377 124 87 7 chr6 56315296 56315838 -93201199 + RMER4B LTR ERVK 1 585 0 4 1014 413 254 79 60 chr6 56315838 56316032 -93201005 + L1MA4A LINE L1 5715 5930 -373 4 1014 224 310 42 66 chr6 56316384 56316550 -93200487 - L2c LINE L2 -175 3212 3051 4 1014 809 198 106 5 chr6 56316860 56317078 -93199959 + Lx9 LINE L1 7402 7641 -3 4 1014 444 328 15 37 chr6 56317591 56317671 -93199366 + B4A SINE B4 1 80 -212 4 1014 279 0 0 0 chr6 56317671 56317702 -93199335 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1014 444 328 15 37 chr6 56317702 56317757 -93199280 + B4A SINE B4 81 133 -159 4 1014 432 234 0 11 chr6 56317870 56317965 -93199072 - L1MCa LINE L1 -4428 2080 1987 4 1014 306 0 0 0 chr6 56318631 56318665 -93198372 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1014 859 136 21 0 chr6 56319616 56319756 -93197281 - RLTR27 LTR ERVK -166 143 1 4 1014 532 250 43 0 chr6 56320274 56320390 -93196647 + B1_Mur1 SINE Alu 2 122 -27 4 1014 549 125 0 0 chr6 56320390 56320478 -93196559 + (GAA)n Simple_repeat Simple_repeat 2 89 0 4 1014 318 355 25 67 chr6 56320489 56320658 -93196379 - MLT1H1 LTR MaLR -276 273 56 4 1014 2767 76 10 15 chr6 56320658 56321047 -93195990 - L1Md_F2 LINE L1 0 6582 6196 4 1014 318 353 16 75 chr6 56321047 56321106 -93195931 - MLT1H1 LTR MaLR -500 55 6 4 1014 207 0 0 0 chr6 56323207 56323230 -93193807 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1014 594 159 0 0 chr6 56324918 56325025 -93192012 + (CAA)n Simple_repeat Simple_repeat 2 108 0 4 1014 929 308 73 17 chr6 56325334 56326018 -93191019 - L1M2 LINE L1 -612 5679 4889 4 1014 4308 150 33 6 chr6 56326337 56327042 -93189995 + Lx4A LINE L1 6335 7058 0 4 1014 277 42 0 41 chr6 56327043 56327092 -93189945 + (CAAAAA)n Simple_repeat Simple_repeat 3 49 0 4 1014 243 335 67 20 chr6 56327207 56327402 -93189635 - L2 LINE L2 -384 3035 2832 4 1014 315 304 234 16 chr6 56327427 56327671 -93189366 + Lx9 LINE L1 7313 7609 -35 4 1014 249 33 0 0 chr6 56327695 56327725 -93189312 + (TAA)n Simple_repeat Simple_repeat 1 30 0 4 1014 5463 122 56 23 chr6 56330034 56330961 -93186076 + RMER17B LTR ERVK 1 958 0 4 1014 425 202 95 16 chr6 56331387 56331513 -93185524 + MER44D DNA MER2_type 1 136 -569 4 1014 501 270 72 0 chr6 56331667 56331819 -93185218 + MER44D DNA MER2_type 543 705 0 4 1014 1831 266 61 47 chr6 56331915 56332624 -93184413 + RCHARR1 DNA MER1_type 37 755 -219 4 1014 259 329 23 47 chr6 56333615 56333701 -93183336 + MIRb SINE MIR 21 104 -164 4 1014 441 352 51 11 chr6 56333954 56334168 -93182869 - MLT2B4 LTR ERVL -283 237 21 4 1014 1906 98 50 59 chr6 56334806 56334865 -93182172 - Lx LINE L1 -2 6652 6594 4 1014 351 0 0 0 chr6 56334865 56334904 -93182133 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1014 1906 98 50 59 chr6 56334904 56335181 -93181856 - Lx LINE L1 -61 6593 6319 4 1014 1219 69 0 0 chr6 56335537 56335696 -93181341 + L1_Mus1 LINE L1 6408 6566 -1 4 1014 243 0 0 0 chr6 56335708 56335735 -93181302 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 1014 981 169 22 0 chr6 56336509 56336692 -93180345 - B2_Mm2 SINE B2 -7 188 2 4 1014 218 359 33 0 chr6 56338584 56338676 -93178361 + MIRb SINE MIR 154 248 -20 4 1014 213 39 0 0 chr6 56339432 56339458 -93177579 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1014 519 338 73 90 chr6 56339473 56339941 -93177096 + HAL1 LINE L1 602 1061 -1446 4 1014 24 0 0 0 chr6 56339977 56340001 -93177036 + AT_rich Low_complexity Low_complexity 1 24 0 4 1014 419 275 75 62 chr6 56340065 56340449 -93176588 + HAL1 LINE L1 1271 1659 -848 4 1014 260 250 71 101 chr6 56340459 56340628 -93176409 + RSINE1 SINE B4 2 165 0 4 1014 220 250 0 0 chr6 56341491 56341531 -93175506 + G-rich Low_complexity Low_complexity 1 40 0 4 1014 284 307 101 43 chr6 56341565 56341963 -93175074 + L1MCa LINE L1 661 1081 -4964 4 1014 24395 20 0 1 chr6 56341964 56345628 -93171409 - L1Md_A LINE L1 -1 6581 2920 4 1014 3180 71 17 6 chr6 56345622 56346090 -93170947 - L1Md_A LINE L1 -5836 888 416 4 1014 904 274 145 33 chr6 56346402 56347193 -93169844 + L1MCa LINE L1 1489 2368 -4383 4 1014 477 0 0 0 chr6 56347619 56347672 -93169365 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1014 525 321 82 0 chr6 56347940 56348124 -93168913 - MER20 DNA MER1_type 0 219 21 4 1014 226 330 72 31 chr6 56348836 56348933 -93168104 - MIRm SINE MIR -130 146 46 4 1014 252 298 60 0 chr6 56351569 56351653 -93165384 + PB1D10 SINE Alu 13 101 -16 4 1014 186 103 0 0 chr6 56351668 56351697 -93165340 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 4 1014 1129 78 0 0 chr6 56352147 56352289 -93164748 + B1_Mus1 SINE Alu 2 143 -5 4 1014 233 29 0 29 chr6 56352302 56352337 -93164700 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 4 1014 189 214 0 0 chr6 56352397 56352439 -93164598 + GA-rich Low_complexity Low_complexity 1 42 0 4 1014 4979 77 0 0 chr6 56353931 56354635 -93162402 - L1Md_F2 LINE L1 -2153 3730 3027 4 1014 16250 49 0 0 chr6 56354634 56356953 -93160084 + L1Md_F2 LINE L1 3734 6052 -530 4 1014 2518 45 0 3 chr6 56356953 56357267 -93159770 + L1Md_F2 LINE L1 6258 6570 -12 4 1014 236 167 45 0 chr6 56357404 56357470 -93159567 - L1M5 LINE L1 -2835 3311 3243 4 1014 1222 34 7 0 chr6 56357471 56357617 -93159420 - B1_Mm SINE Alu 0 147 1 4 1014 4118 40 0 4 chr6 56357683 56358182 -93158855 + L1Md_F3 LINE L1 6088 6584 0 4 1014 458 245 0 30 chr6 56359556 56359657 -93157380 - Lx8 LINE L1 -146 7327 7230 4 1014 23 0 0 0 chr6 56359794 56359817 -93157220 + AT_rich Low_complexity Low_complexity 1 23 0 4 1014 1277 289 91 18 chr6 56359829 56359913 -93157124 - Lx8 LINE L1 -28 7445 7357 4 1014 216 0 0 0 chr6 56359913 56359937 -93157100 + (TC)n Simple_repeat Simple_repeat 2 25 0 4 1014 1277 289 91 18 chr6 56359937 56360356 -93156681 - Lx8 LINE L1 -117 7356 6906 4 1014 1304 281 136 8 chr6 56360368 56360870 -93156167 - Lx8 LINE L1 -597 6876 6311 4 1015 216 0 0 0 chr6 56361056 56361080 -93155957 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1015 21 0 0 0 chr6 56361779 56361800 -93155237 + AT_rich Low_complexity Low_complexity 1 21 0 4 1015 249 57 0 0 chr6 56361809 56361844 -93155193 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1015 1612 202 53 25 chr6 56361891 56362287 -93154750 + Lx4B LINE L1 5971 6377 -681 4 1015 5084 68 40 12 chr6 56362349 56363705 -93153332 + L1VL2 LINE L1 333 1738 -1877 4 1015 290 412 0 73 chr6 56363706 56363829 -93153208 - RSINE1 SINE B4 -46 119 6 4 1015 686 207 48 15 chr6 56364297 56364501 -93152536 + L1_Rod LINE L1 5328 5573 -607 4 1015 2019 41 4 4 chr6 56364949 56365195 -93151842 + L1Md_F2 LINE L1 6325 6570 -12 4 1015 592 305 36 26 chr6 56365365 56365560 -93151477 + MLT1L LTR MaLR 406 602 -8 4 1015 294 314 115 38 chr6 56365564 56365760 -93151277 - MIRb SINE MIR -9 259 55 4 1015 9774 14 1 0 chr6 56367395 56368581 -93148456 - L1Md_A LINE L1 -1078 4805 3619 4 1015 6492 14 0 0 chr6 56368579 56369351 -93147686 + L1Md_A LINE L1 4814 5585 -298 4 1015 8413 35 0 0 chr6 56369352 56370348 -93146689 + L1Md_A LINE L1 5587 6582 0 4 1015 494 43 0 14 chr6 56370555 56370625 -93146412 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1015 645 49 0 0 chr6 56370827 56370908 -93146129 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 4 1015 189 0 0 0 chr6 56371160 56371181 -93145856 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1015 543 299 38 24 chr6 56371316 56371501 -93145536 - B3A SINE B2 -34 182 1 4 1015 448 313 48 24 chr6 56371534 56371701 -93145336 + Lx8 LINE L1 6770 6940 -533 4 1015 338 255 130 99 chr6 56371861 56371890 -93145147 + B4 SINE B4 59 92 -200 4 1015 703 158 25 0 chr6 56371890 56372023 -93145014 + B1_Mur1 SINE Alu 1 149 0 4 1015 769 327 80 28 chr6 56372281 56372680 -93144357 - MLT1K LTR MaLR -2 593 174 4 1015 219 285 144 68 chr6 56373194 56373326 -93143711 - L2 LINE L2 -558 2861 2720 4 1015 216 298 173 32 chr6 56373804 56373960 -93143077 - MIRm SINE MIR -71 197 20 4 1015 243 88 0 0 chr6 56374188 56374222 -93142815 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1015 559 187 0 61 chr6 56374223 56374337 -93142700 - PB1D9 SINE Alu -12 108 2 4 1015 432 0 0 0 chr6 56374654 56374702 -93142335 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1015 5492 120 8 4 chr6 56374766 56375592 -93141445 - Lx2A LINE L1 0 7008 6179 4 1015 832 112 14 7 chr6 56376553 56376697 -93140340 + (TCTCCC)n Simple_repeat Simple_repeat 4 148 0 4 1015 303 93 0 0 chr6 56377184 56377227 -93139810 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1015 192 339 31 0 chr6 56377234 56377299 -93139738 + MIRm SINE MIR 1 67 -209 4 1015 7441 74 4 5 chr6 56378354 56380105 -93136932 + L1_Mus1 LINE L1 4820 6566 -1 4 1015 433 186 35 11 chr6 56380121 56380208 -93136829 + B3A SINE B2 27 115 -83 4 1015 278 255 93 84 chr6 56380260 56380474 -93136563 + L1MC4 LINE L1 7564 7779 -263 4 1015 280 73 0 52 chr6 56380499 56380557 -93136480 + (TTTTTG)n Simple_repeat Simple_repeat 1 55 0 4 1015 1215 324 37 37 chr6 56380880 56381560 -93135477 + Lx8 LINE L1 6331 7010 -463 4 1015 252 0 0 0 chr6 56382833 56382861 -93134176 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1015 246 314 8 92 chr6 56384249 56384379 -93132658 + PB1 SINE Alu 1 119 -8 4 1015 272 339 74 25 chr6 56384468 56384589 -93132448 + MamGypLTR2 LTR Gypsy 1063 1189 0 4 1015 189 213 21 21 chr6 56384719 56384767 -93132270 + MER5A DNA MER1_type 103 150 -39 4 1015 204 40 0 0 chr6 56385137 56385162 -93131875 + (TTG)n Simple_repeat Simple_repeat 2 26 0 4 1015 360 0 0 0 chr6 56386003 56386043 -93130994 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1015 878 239 118 27 chr6 56388157 56388461 -93128576 - ORR1D1 LTR MaLR -14 364 3 4 1015 423 0 0 0 chr6 56388630 56388677 -93128360 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1015 639 0 0 0 chr6 56388853 56388924 -93128113 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 4 1015 763 163 7 34 chr6 56388939 56388951 -93128086 - B1_Mm SINE Alu 0 147 136 4 1015 186 71 0 0 chr6 56388951 56388979 -93128058 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1015 763 163 7 34 chr6 56388979 56389112 -93127925 - B1_Mm SINE Alu -12 135 7 4 1015 329 304 52 117 chr6 56388993 56389224 -93127813 - MT2B LTR ERVL -323 278 63 5 1015 5640 8 0 0 chr6 56392556 56393144 -93123893 + L1Md_T LINE L1 5995 6582 0 5 1015 219 36 0 0 chr6 56393427 56393455 -93123582 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1015 303 130 0 0 chr6 56393651 56393697 -93123340 + ORR1A4 LTR MaLR 1 46 -283 5 1015 3742 176 42 59 chr6 56393741 56394556 -93122481 + RLTR40 LTR ERVK 12 812 -5 5 1015 1080 111 52 0 chr6 56394622 56394794 -93122243 - Lx LINE L1 -2 6652 6472 5 1015 335 314 83 59 chr6 56394959 56395213 -93121824 + MER74A LTR ERVL 171 430 -128 5 1015 228 211 0 66 chr6 56396643 56396704 -93120333 + Charlie23a DNA MER1_type 166 222 -117 5 1015 259 349 40 33 chr6 56396885 56397162 -93119875 + MLT1L LTR MaLR 95 450 -160 5 1015 250 302 83 111 chr6 56397272 56397525 -93119512 + LTR37A LTR ERV1 47 292 -134 5 1015 414 282 81 47 chr6 56397555 56397820 -93119217 - MTEb LTR MaLR -19 360 63 5 1015 316 270 40 10 chr6 56397844 56397945 -93119092 - MLT2B2 LTR ERVL -407 108 5 5 1015 23 33 0 0 chr6 56398407 56398437 -93118600 + AT_rich Low_complexity Low_complexity 1 30 0 5 1015 201 163 0 0 chr6 56398465 56398514 -93118523 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1015 212 167 0 0 chr6 56398796 56398838 -93118199 + (TTTAA)n Simple_repeat Simple_repeat 1 42 0 5 1015 597 332 163 9 chr6 56399324 56399661 -93117376 + MER74A LTR ERVL 125 513 -45 5 1015 409 295 104 12 chr6 56401376 56401616 -93115421 - L1MA6 LINE L1 -362 5938 5677 5 1015 891 281 79 0 chr6 56401770 56402111 -93114926 - L1MA6 LINE L1 -632 5659 5292 5 1015 9159 83 47 1 chr6 56402127 56403392 -93113645 - Lx2 LINE L1 0 6997 5675 5 1015 288 287 177 98 chr6 56403367 56403519 -93113518 - L1MA6 LINE L1 -842 5301 5126 5 1015 3450 142 73 6 chr6 56403519 56404063 -93112974 - RMER4B LTR ERVK 0 585 5 5 1015 288 287 177 98 chr6 56404063 56404339 -93112698 - L1MA6 LINE L1 -1018 5125 4839 5 1015 1327 194 37 0 chr6 56404339 56404581 -93112456 + Lx9 LINE L1 6541 6791 -853 5 1015 588 288 113 49 chr6 56404682 56405194 -93111843 + L1_Mur3 LINE L1 5007 5506 -374 5 1015 489 314 0 8 chr6 56405654 56405779 -93111258 - RSINE1 SINE B4 -40 125 2 5 1015 8418 41 10 2 chr6 56405794 56407490 -93109547 - L1Md_F3 LINE L1 -14 6570 4860 5 1015 1063 191 34 19 chr6 56407679 56407887 -93109150 + B3 SINE B2 1 211 -5 5 1015 23 0 0 0 chr6 56407959 56407982 -93109055 + AT_rich Low_complexity Low_complexity 1 23 0 5 1015 761 240 98 39 chr6 56408204 56408408 -93108629 - B3 SINE B2 0 216 1 5 1015 297 272 108 25 chr6 56408834 56409075 -93107962 - MER33 DNA MER1_type -30 294 34 5 1015 1010 151 0 0 chr6 56409837 56409989 -93107048 - Lx4A LINE L1 -186 6872 6721 5 1015 795 178 27 14 chr6 56409981 56410129 -93106908 + Lx4A LINE L1 6873 7022 -36 5 1015 24 53 0 0 chr6 56410132 56410170 -93106867 + AT_rich Low_complexity Low_complexity 1 38 0 5 1015 35850 60 7 4 chr6 56410628 56416622 -93100415 - L1Md_F2 LINE L1 0 6585 474 5 1015 217 187 0 20 chr6 56417871 56417922 -93099115 + MIRm SINE MIR 208 264 -12 5 1015 1598 286 121 9 chr6 56418186 56419143 -93097894 - L1MD1 LINE L1 -166 6467 5385 5 1015 1250 316 57 80 chr6 56419159 56419888 -93097149 - Lx7 LINE L1 0 7473 6751 5 1015 939 299 75 29 chr6 56419888 56420301 -93096736 - L1MD1 LINE L1 -1203 5334 4903 5 1015 1909 279 116 96 chr6 56420499 56422008 -93095029 - L1MD1 LINE L1 -1632 4905 3419 5 1015 4514 6 0 0 chr6 56422008 56422477 -93094560 - L1Md_T LINE L1 0 6582 6114 5 1015 1909 274 111 85 chr6 56422477 56423353 -93093684 - L1MD1 LINE L1 -3119 3418 2469 5 1015 717 281 147 48 chr6 56423451 56424035 -93093002 - L1MD1 LINE L1 -4323 2310 1669 5 1015 320 306 56 0 chr6 56424233 56424341 -93092696 - MLT1G1 LTR MaLR -459 120 7 5 1015 248 253 22 22 chr6 56424528 56424617 -93092420 - L1MD1 LINE L1 -6019 508 420 5 1015 250 311 40 13 chr6 56425103 56425178 -93091859 - MER5A DNA MER1_type -66 123 47 5 1015 444 249 114 153 chr6 56425401 56425794 -93091243 - L1MA10 LINE L1 -13 6321 5944 5 1015 731 246 143 11 chr6 56426346 56426535 -93090502 - B3 SINE B2 0 216 3 5 1015 341 312 56 19 chr6 56428388 56428548 -93088489 - MER5A1 DNA MER1_type 0 166 1 5 1015 2609 43 56 89 chr6 56428642 56429000 -93088037 + ORR1A1 LTR MaLR 1 346 0 5 1015 1656 255 115 24 chr6 56429256 56429750 -93087287 + Lx7 LINE L1 6337 6875 -821 5 1015 1349 56 0 0 chr6 56429750 56429912 -93087125 + L1_Mus1 LINE L1 6406 6567 0 5 1015 1195 89 6 6 chr6 56429926 56430106 -93086931 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1015 530 277 66 73 chr6 56430375 56430648 -93086389 - B4 SINE B4 -19 273 3 5 1015 379 333 74 7 chr6 56432524 56432672 -93084365 - MER5A DNA MER1_type -5 184 27 5 1015 4720 31 0 0 chr6 56432948 56433462 -93083575 + L1Md_T LINE L1 6068 6581 -1 5 1015 503 164 32 13 chr6 56433858 56434012 -93083025 + (CA)n Simple_repeat Simple_repeat 2 158 0 5 1015 513 151 40 28 chr6 56434066 56434243 -93082794 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1015 180 0 0 0 chr6 56434244 56434264 -93082773 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1015 450 0 0 0 chr6 56434756 56434806 -93082231 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 5 1015 284 315 0 0 chr6 56434857 56434930 -93082107 + MER5B DNA MER1_type 13 85 -93 5 1015 210 336 171 8 chr6 56436739 56436862 -93080175 - MIRb SINE MIR -125 143 1 5 1015 328 258 20 20 chr6 56436892 56436991 -93080046 + PB1D10 SINE Alu 10 108 -9 5 1015 222 359 31 61 chr6 56437037 56437051 -93079986 + BC1_Mm scRNA scRNA 5 31 -121 5 1015 255 308 0 0 chr6 56437051 56437103 -93079934 + ID SINE ID 23 74 -150 5 1015 222 359 31 61 chr6 56437103 56437135 -93079902 + BC1_Mm scRNA scRNA 32 99 -53 5 1015 203 321 70 18 chr6 56438101 56438215 -93078822 - MIRc SINE MIR -118 150 31 5 1015 263 244 137 40 chr6 56439455 56439579 -93077458 + MLT1A1 LTR MaLR 268 403 -5 5 1015 234 0 0 0 chr6 56441745 56441771 -93075266 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1015 388 285 86 25 chr6 56442865 56443063 -93073974 - MIR SINE MIR -32 230 21 5 1015 214 335 81 54 chr6 56443117 56443345 -93073692 + L2a LINE L2 3097 3391 -35 5 1015 215 275 58 0 chr6 56443779 56443848 -93073189 + MIRc SINE MIR 15 87 -181 5 1015 1707 246 44 10 chr6 56444216 56444602 -93072435 + MTD LTR MaLR 13 411 -8 5 1015 1255 135 124 10 chr6 56444782 56444984 -93072053 - URR1B DNA MER1_type 0 225 1 5 1015 336 302 47 110 chr6 56445118 56445419 -93071618 - B4A SINE B4 -10 282 1 5 1015 555 43 0 0 chr6 56445852 56445922 -93071115 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 1015 686 314 94 32 chr6 56446055 56446394 -93070643 - MTD LTR MaLR -54 365 6 5 1015 214 301 123 28 chr6 56446587 56446693 -93070344 + L2a LINE L2 3281 3396 -30 5 1015 791 311 89 51 chr6 56446760 56447211 -93069826 + MLT1F LTR MaLR 1 468 -80 5 1015 193 272 185 0 chr6 56447448 56447529 -93069508 - MIRb SINE MIR -99 169 74 5 1015 237 65 0 0 chr6 56447616 56447647 -93069390 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1015 186 273 0 0 chr6 56448353 56448397 -93068640 - MIRb SINE MIR -201 67 24 5 1015 494 258 23 81 chr6 56450238 56450411 -93066626 + RSINE1 SINE B4 3 165 0 5 1015 1210 62 7 7 chr6 56450449 56450596 -93066441 + B1_Mm SINE Alu 1 147 0 5 1015 749 331 53 68 chr6 56450917 56451459 -93065578 + L1MA4A LINE L1 5483 6016 -281 5 1015 490 251 32 64 chr6 56451778 56451965 -93065072 + L1MD3 LINE L1 7 187 -6360 5 1015 283 287 169 18 chr6 56452091 56452369 -93064668 + L1MD3 LINE L1 1005 1322 -5318 5 1015 408 40 0 0 chr6 56452446 56452496 -93064541 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 5 1015 771 287 99 48 chr6 56452498 56453127 -93063910 + L1MD3 LINE L1 3471 4131 -2413 5 1015 795 294 21 30 chr6 56453156 56453391 -93063646 - Lx6 LINE L1 -1 7459 7227 5 1015 630 161 0 0 chr6 56453401 56453513 -93063524 + (TA)n Simple_repeat Simple_repeat 1 112 0 5 1015 198 103 0 0 chr6 56453581 56453610 -93063427 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1015 340 250 42 0 chr6 56453612 56453684 -93063353 + B3A SINE B2 1 75 -123 5 1015 237 288 51 110 chr6 56453786 56453939 -93063098 + L1MD3 LINE L1 4352 4512 -2032 5 1015 583 264 76 16 chr6 56453939 56454124 -93062913 + B3A SINE B2 1 196 -2 5 1015 237 288 51 110 chr6 56454124 56454224 -93062813 + L1MD3 LINE L1 4513 4590 -1954 5 1015 740 138 8 0 chr6 56454226 56454356 -93062681 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 5 1015 295 308 107 11 chr6 56454381 56454644 -93062393 + L1MD3 LINE L1 4593 4880 -1664 5 1015 380 258 0 61 chr6 56454962 56455061 -93061976 + PB1D10 SINE Alu 1 93 -24 5 1015 225 191 24 0 chr6 56455074 56455116 -93061921 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1015 694 289 90 82 chr6 56455165 56456316 -93060721 + L1MD3 LINE L1 5271 6398 -1995 5 1015 311 301 77 77 chr6 56456998 56457218 -93059819 + L1M5 LINE L1 4596 4815 -1331 5 1015 23678 6 0 0 chr6 56457700 56460327 -93056710 + L1Md_A LINE L1 2960 5586 -297 5 1015 9600 4 0 0 chr6 56460327 56461323 -93055714 + L1Md_A LINE L1 5587 6582 0 5 1015 20444 20 0 2 chr6 56461328 56463669 -93053368 + L1Md_T LINE L1 3251 5586 -297 5 1015 8982 34 0 0 chr6 56463669 56464665 -93052372 + L1Md_T LINE L1 5587 6582 0 5 1015 1795 201 62 17 chr6 56465475 56465829 -93051208 + ORR1D1 LTR MaLR 3 372 -2 5 1015 4711 233 65 20 chr6 56465834 56466947 -93050090 + ORR1D1-int LTR MaLR 4 1167 -203 5 1015 996 142 150 16 chr6 56466947 56467140 -93049897 + MTC LTR MaLR 1 219 -202 5 1015 1106 47 0 0 chr6 56467140 56467269 -93049768 - L1Md_F2 LINE L1 -196 6386 6258 5 1015 1396 82 0 0 chr6 56467271 56467455 -93049582 + L1Md_F2 LINE L1 6399 6582 0 5 1015 24 0 0 0 chr6 56467455 56467479 -93049558 + AT_rich Low_complexity Low_complexity 1 24 0 5 1015 7833 55 17 0 chr6 56467493 56468457 -93048580 + L1_Mus2 LINE L1 5587 6566 0 5 1015 813 167 0 0 chr6 56468496 56468646 -93048391 + GA-rich Low_complexity Low_complexity 4 153 0 5 1015 1222 187 4 26 chr6 56468647 56468878 -93048159 + MTC LTR MaLR 196 421 0 5 1015 1011 152 81 30 chr6 56468882 56468950 -93048087 + ORR1D1-int LTR MaLR 1164 1245 -125 5 1015 1432 70 11 21 chr6 56468950 56469139 -93047898 + B2_Mm1a SINE B2 2 188 -5 5 1015 1011 152 81 30 chr6 56469139 56469267 -93047770 + ORR1D1-int LTR MaLR 1246 1370 0 5 1015 1895 171 66 33 chr6 56469267 56469629 -93047408 + ORR1D1 LTR MaLR 1 374 0 5 1015 180 263 126 39 chr6 56469650 56469753 -93047284 - L2 LINE L2 -2914 505 394 5 1015 1368 216 110 32 chr6 56469875 56470220 -93046817 + ORR1D1 LTR MaLR 3 374 0 5 1015 520 305 35 55 chr6 56471177 56471316 -93045721 - Lx9 LINE L1 -40 7604 7475 5 1015 459 0 0 0 chr6 56471316 56471367 -93045670 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1015 520 305 35 55 chr6 56471367 56471574 -93045463 - Lx9 LINE L1 -170 7474 7266 5 1015 308 313 0 68 chr6 56473445 56473548 -93043489 + MamRep137 DNA TcMar? 1 96 -348 5 1015 230 167 0 59 chr6 56473947 56473998 -93043039 - MER5A DNA MER1_type -135 54 7 5 1015 342 0 0 0 chr6 56474505 56474543 -93042494 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1015 275 176 20 0 chr6 56475686 56475737 -93041300 - B2_Mm2 SINE B2 -142 53 2 6 1015 448 333 11 11 chr6 56476028 56476204 -93040833 - Lx8 LINE L1 -615 6858 6683 6 1015 718 221 26 7 chr6 56476199 56476354 -93040683 - Lx8 LINE L1 -1017 6456 6299 6 1015 297 212 122 0 chr6 56476813 56476898 -93040139 + MIRb SINE MIR 99 198 -70 6 1015 219 287 96 0 chr6 56478064 56478158 -93038879 - MER5A DNA MER1_type -78 111 9 6 1015 449 289 40 60 chr6 56478269 56478519 -93038518 - Lx9 LINE L1 -15 7629 7385 6 1015 1434 205 183 58 chr6 56478546 56479043 -93037994 - RMER4B LTR ERVK -9 576 18 6 1015 752 250 82 22 chr6 56479286 56479470 -93037567 - B3 SINE B2 -20 196 2 6 1015 181 135 81 0 chr6 56479470 56479507 -93037530 + MIRc SINE MIR 124 163 -105 6 1015 326 314 48 63 chr6 56481495 56481621 -93035416 - B1F2 SINE Alu -20 129 6 6 1015 707 274 36 12 chr6 56481536 56481702 -93035335 - ID_B1 SINE B4 -54 170 1 6 1015 238 346 116 16 chr6 56482682 56482811 -93034226 + MIRb SINE MIR 63 204 -64 6 1015 289 185 15 30 chr6 56483958 56484025 -93033012 + Lx8 LINE L1 7060 7125 -348 6 1015 374 186 160 104 chr6 56484227 56484371 -93032666 - HAL1-3A_ME LINE L1 -731 2127 1976 6 1015 296 200 11 0 chr6 56484371 56484461 -93032576 + (TG)n Simple_repeat Simple_repeat 1 91 0 6 1015 362 356 72 35 chr6 56484781 56485127 -93031910 - L1MC4 LINE L1 -509 7533 7175 6 1015 185 379 99 14 chr6 56485316 56485458 -93031579 - MIRb SINE MIR -95 173 20 6 1015 490 380 0 18 chr6 56486142 56486311 -93030726 + MLT1K LTR MaLR 119 284 -311 6 1015 528 354 12 46 chr6 56486346 56486586 -93030451 + MLT1K LTR MaLR 358 589 -6 6 1015 4697 153 93 85 chr6 56487000 56488042 -93028995 + RLTR25A LTR ERVK 54 1103 0 6 1015 420 295 140 63 chr6 56488356 56488627 -93028410 + B4 SINE B4 1 292 0 6 1015 229 278 54 22 chr6 56488739 56488831 -93028206 - L2a LINE L2 -6 3420 3326 6 1015 273 230 0 0 chr6 56489308 56489382 -93027655 + A-rich Low_complexity Low_complexity 2 75 0 6 1015 225 212 130 43 chr6 56489410 56489479 -93027558 + MIRb SINE MIR 7 81 -187 6 1015 1268 89 42 62 chr6 56489623 56489815 -93027222 - B2_Mm2 SINE B2 -7 188 1 6 1015 351 302 45 23 chr6 56489863 56489995 -93027042 + B1F SINE Alu 15 149 0 6 1015 971 182 86 36 chr6 56490400 56490622 -93026415 + MTD LTR MaLR 3 235 -184 6 1015 1369 199 80 44 chr6 56490758 56491102 -93025935 - ORR1D1 LTR MaLR 0 326 1 6 1015 1338 266 97 22 chr6 56491111 56491607 -93025430 + L1M2 LINE L1 3725 4257 -1886 6 126 531 244 0 0 chr6 56491894 56492062 -93024975 + (TA)n Simple_repeat Simple_repeat 2 169 0 6 1016 2703 167 14 0 chr6 56492166 56492579 -93024458 - MTC LTR MaLR -2 419 1 6 1016 239 333 0 0 chr6 56492683 56492740 -93024297 + Tigger7 DNA MER2_type 2433 2489 -2 6 1016 345 352 0 0 chr6 56493404 56493512 -93023525 + PB1D10 SINE Alu 1 108 -9 6 1016 24 85 0 0 chr6 56493654 56493713 -93023324 + AT_rich Low_complexity Low_complexity 1 59 0 6 1016 827 228 14 7 chr6 56493722 56493868 -93023169 - RSINE1 SINE B4 -17 148 2 6 1016 444 256 11 0 chr6 56493975 56494065 -93022972 - MTC LTR MaLR -31 390 300 6 1016 183 42 0 0 chr6 56494267 56494291 -93022746 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1016 3008 167 59 93 chr6 56494404 56494997 -93022040 + RMER15 LTR ERVL 3 575 0 6 1016 702 265 213 23 chr6 56495079 56495380 -93021657 - MER21B LTR ERV1 -1 862 505 6 1016 273 204 74 0 chr6 56495386 56495440 -93021597 + PB1 SINE Alu 68 125 -2 6 1016 247 179 0 0 chr6 56495457 56495496 -93021541 + ID2 SINE ID 9 47 -36 6 1016 779 210 7 20 chr6 56495617 56495763 -93021274 + B1F SINE Alu 5 148 -1 6 1016 3097 234 180 48 chr6 56496360 56496760 -93020277 - Lx9 LINE L1 -691 6953 6558 6 1016 1069 101 0 0 chr6 56496760 56496898 -93020139 - B1_Mus1 SINE Alu -6 142 5 6 1016 6912 225 101 47 chr6 56496898 56498915 -93018122 - Lx9 LINE L1 -1087 6557 4297 6 1016 2181 171 15 73 chr6 56498915 56499313 -93017724 + ORR1C1 LTR MaLR 1 375 -3 6 1016 6912 222 74 47 chr6 56499313 56499838 -93017199 - Lx9 LINE L1 -1551 4296 3769 6 1016 473 217 8 91 chr6 56499859 56499991 -93017046 + Lx9 LINE L1 6942 7062 -582 6 1016 928 259 85 53 chr6 56500000 56500412 -93016625 + Lx9 LINE L1 7205 7629 -15 1 1016 456 19 0 0 chr6 56500556 56500609 -93016428 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 2 1016 24 0 0 0 chr6 56501471 56501495 -93015542 + AT_rich Low_complexity Low_complexity 1 24 0 3 1016 22 35 0 0 chr6 56501779 56501808 -93015229 + AT_rich Low_complexity Low_complexity 1 29 0 4 1016 324 0 0 0 chr6 56502414 56502450 -93014587 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1016 250 311 87 0 chr6 56502524 56502627 -93014410 + PB1D10 SINE Alu 5 116 -1 6 1016 209 176 39 0 chr6 56502664 56502715 -93014322 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 7 1016 1371 330 35 33 chr6 56502794 56503317 -93013720 + Lx8 LINE L1 6805 7336 -137 8 1016 5126 57 2 0 chr6 56503317 56503948 -93013089 + L1_Mus1 LINE L1 5936 6567 0 9 1016 1371 330 35 33 chr6 56503948 56504055 -93012982 + Lx8 LINE L1 7337 7436 -37 8 1016 21 36 0 0 chr6 56504091 56504119 -93012918 + AT_rich Low_complexity Low_complexity 1 28 0 1 1016 545 262 158 106 chr6 56504127 56504611 -93012426 + Lx7 LINE L1 6950 7473 0 1 1016 31 0 0 0 chr6 56505250 56505281 -93011756 + AT_rich Low_complexity Low_complexity 1 31 0 1 1016 2174 291 59 19 chr6 56506325 56507126 -93009911 + Lx8 LINE L1 6257 7089 -384 1 1016 332 312 136 45 chr6 56507168 56507433 -93009604 + Lx8 LINE L1 7151 7439 -34 1 1016 560 268 106 0 chr6 56507834 56508032 -93009005 + L1M4 LINE L1 5522 5740 -444 1 1016 232 338 12 0 chr6 56511450 56511530 -93005507 + ID4_ SINE ID 1 81 -2 1 1016 270 261 0 0 chr6 56511541 56511606 -93005431 - L1MB1 LINE L1 -77 6091 6027 1 1016 802 234 23 0 chr6 56511642 56511817 -93005220 + B3 SINE B2 1 179 -37 1 1016 587 211 9 0 chr6 56511896 56512010 -93005027 - MTEa LTR MaLR 0 379 265 1 1016 2888 181 74 16 chr6 56512051 56512676 -93004361 + Lx9 LINE L1 6983 7643 -1 1 1016 747 253 24 52 chr6 56512698 56512948 -93004089 - Lx6 LINE L1 -30 7430 7188 2 1016 630 203 35 0 chr6 56512918 56513061 -93003976 + L1_Mur2 LINE L1 5135 5282 -595 2 1016 509 0 0 16 chr6 56513235 56513297 -93003740 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1016 1777 229 27 12 chr6 56514765 56515177 -93001860 - MTD LTR MaLR -1 418 1 2 1016 23 68 0 0 chr6 56516667 56516711 -93000326 + AT_rich Low_complexity Low_complexity 1 44 0 2 1016 193 256 0 0 chr6 56516844 56516887 -93000150 - MIRb SINE MIR -11 257 215 2 1016 198 156 0 0 chr6 56518071 56518116 -92998921 + T-rich Low_complexity Low_complexity 1 45 0 2 1016 205 163 40 20 chr6 56520378 56520428 -92996609 + (CATATA)n Simple_repeat Simple_repeat 5 55 0 2 1016 389 70 0 17 chr6 56520432 56520490 -92996547 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1016 207 69 0 0 chr6 56520850 56520879 -92996158 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1016 231 330 25 50 chr6 56521154 56521275 -92995762 + MER58B DNA MER1_type 1 118 -223 3 1016 737 264 139 5 chr6 56521301 56521510 -92995527 + Lx5 LINE L1 6804 7040 -10 3 1016 390 282 0 0 chr6 56521548 56521626 -92995411 + PB1D10 SINE Alu 1 78 -39 3 1016 327 314 0 11 chr6 56521645 56521732 -92995305 - PB1D7 SINE Alu -32 88 3 3 1016 212 324 14 14 chr6 56521673 56521745 -92995292 - B4A SINE B4 -147 145 74 3 1016 21 0 0 0 chr6 56522622 56522643 -92994394 + AT_rich Low_complexity Low_complexity 1 21 0 3 1016 470 325 21 10 chr6 56523140 56523333 -92993704 - MLT1J2 LTR MaLR -188 260 66 3 1016 441 0 0 0 chr6 56523732 56523781 -92993256 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1016 219 114 0 0 chr6 56524669 56524704 -92992333 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 1016 373 258 18 26 chr6 56525157 56525285 -92991752 + ORR1E LTR MaLR 266 379 0 3 1016 258 32 0 0 chr6 56525303 56525334 -92991703 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 1016 2290 276 139 27 chr6 56525630 56525853 -92991184 - Lx8 LINE L1 -304 7169 6927 4 1016 345 47 0 0 chr6 56525853 56525896 -92991141 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1016 2290 276 139 27 chr6 56525896 56526534 -92990503 - Lx8 LINE L1 -547 6926 6213 4 1016 447 232 41 89 chr6 56526557 56526680 -92990357 - RSINE1 SINE B4 -41 124 8 4 1016 280 261 73 32 chr6 56526939 56527062 -92989975 + L2a LINE L2 3299 3426 0 4 1016 227 365 0 12 chr6 56527119 56527205 -92989832 + BC1_Mm scRNA scRNA 20 104 -48 4 1016 213 39 0 0 chr6 56528568 56528594 -92988443 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 4 1016 447 35 0 0 chr6 56529872 56529929 -92987108 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1016 339 271 12 0 chr6 56530099 56530184 -92986853 + MIR SINE MIR 170 255 -7 4 1016 201 39 0 0 chr6 56530292 56530318 -92986719 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1016 1796 246 162 41 chr6 56531757 56533328 -92983709 - RMER1A Other Other 0 1030 1 5 1016 3996 63 36 0 chr6 56534091 56534596 -92982441 + Lx3_Mus LINE L1 6338 6860 -149 5 1016 1333 227 92 10 chr6 56534597 56534944 -92982093 + ORR1D1 LTR MaLR 1 372 -2 5 1016 7798 98 3 32 chr6 56535750 56537327 -92979710 + L1_Mus2 LINE L1 5042 6565 -1 5 1016 7749 174 46 5 chr6 56537343 56539024 -92978013 + Lx5 LINE L1 5283 7049 -1 5 1016 193 282 203 8 chr6 56539741 56539859 -92977178 - MIR SINE MIR -1 261 121 5 1016 495 160 277 13 chr6 56539869 56540049 -92976988 - MTD LTR MaLR 0 419 181 5 1016 342 248 115 0 chr6 56540398 56540511 -92976526 + MER58B DNA MER1_type 87 212 -129 5 1016 180 231 39 0 chr6 56541225 56541277 -92975760 + L2a LINE L2 3089 3142 -284 5 1016 243 236 75 131 chr6 56541505 56541612 -92975425 - MLT2B1 LTR ERVL -12 555 455 5 1016 1006 266 55 4 chr6 56541636 56541908 -92975129 + B4A SINE B4 1 286 -6 6 1016 1087 170 31 48 chr6 56541992 56542221 -92974816 - URR1A DNA MER1_type 0 226 2 6 1016 347 351 52 34 chr6 56542307 56542575 -92974462 - L2 LINE L2 -1316 2103 1831 6 1016 405 241 8 59 chr6 56542903 56543022 -92974015 - MER2 DNA MER2_type -54 291 179 6 1016 283 300 33 11 chr6 56543015 56543106 -92973931 + B1F1 SINE Alu 7 99 -50 6 1016 251 308 13 0 chr6 56543114 56543192 -92973845 + ID4 SINE ID 3 81 -2 6 1016 384 328 76 0 chr6 56543192 56543363 -92973674 - MER2 DNA MER2_type -159 186 3 6 1016 367 297 215 41 chr6 56543461 56543817 -92973220 - L1ME3A LINE L1 -8 6165 5726 6 1016 1435 178 58 186 chr6 56543817 56544300 -92972737 + MTC LTR MaLR 1 421 0 6 1016 367 297 215 41 chr6 56544300 56544427 -92972610 - L1ME3A LINE L1 -448 5725 5598 6 1016 287 331 88 64 chr6 56544557 56545186 -92971851 + L2a LINE L2 2723 3418 -8 6 1016 1082 53 0 0 chr6 56545186 56545318 -92971719 + B1_Mm SINE Alu 3 134 -13 6 1016 378 0 0 0 chr6 56545318 56545360 -92971677 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 7 1016 2127 299 79 51 chr6 56545741 56546049 -92970988 + Lx8 LINE L1 6496 6802 -671 7 1016 616 216 52 0 chr6 56546049 56546183 -92970854 - B1_Mur3 SINE Alu -6 143 3 7 1016 2127 299 79 51 chr6 56546183 56546808 -92970229 + Lx8 LINE L1 6803 7455 -18 7 1016 623 13 13 0 chr6 56547340 56547416 -92969621 + (TC)n Simple_repeat Simple_repeat 2 78 0 7 1016 400 269 40 69 chr6 56548009 56548182 -92968855 + B4 SINE B4 125 290 -2 7 1016 322 102 20 0 chr6 56549427 56549476 -92967561 - ORR1C2 LTR MaLR -333 51 2 7 1016 329 333 58 0 chr6 56549507 56549627 -92967410 - B1F SINE Alu -22 127 1 7 1016 661 76 9 9 chr6 56549628 56549734 -92967303 + (TAGA)n Simple_repeat Simple_repeat 3 108 0 7 1016 486 0 0 0 chr6 56549858 56549912 -92967125 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1016 342 0 0 0 chr6 56549912 56549949 -92967088 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1016 1296 188 110 4 chr6 56549949 56550221 -92966816 - RMER1B Other Other -4 1062 762 8 1016 1047 236 95 17 chr6 56550216 56550457 -92966580 - RMER1B Other Other -762 304 45 8 1016 914 264 85 26 chr6 56551080 56551352 -92965685 + Lx8 LINE L1 7051 7338 -135 8 1016 281 224 6 0 chr6 56551536 56551692 -92965345 + (TG)n Simple_repeat Simple_repeat 2 158 0 8 1016 789 291 92 18 chr6 56551753 56552231 -92964806 + L1M5 LINE L1 5255 5789 -375 8 1016 231 376 49 10 chr6 56552233 56552335 -92964702 + MER45C DNA Tip100 9 114 -839 8 1016 246 345 78 26 chr6 56552519 56552635 -92964402 + MER45C DNA Tip100 717 838 -115 8 1016 615 289 112 53 chr6 56552656 56552709 -92964328 + MTD LTR MaLR 56 113 -283 8 1016 303 49 0 0 chr6 56552709 56552750 -92964287 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 8 1016 1056 182 118 46 chr6 56552750 56553018 -92964019 + MTD LTR MaLR 114 411 -8 8 1016 482 245 41 0 chr6 56553018 56553116 -92963921 + B3A SINE B2 63 164 -34 8 1016 384 125 0 0 chr6 56553116 56553180 -92963857 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1016 1685 157 123 24 chr6 56553474 56553808 -92963229 - ORR1B2 LTR MaLR 0 367 1 8 1016 312 316 139 14 chr6 56553932 56554147 -92962890 + MLT1E1 LTR MaLR 6 247 -407 9 1016 189 0 0 0 chr6 56554638 56554659 -92962378 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9 1016 2358 209 49 30 chr6 56555650 56556257 -92960780 + RCHARR1 DNA MER1_type 2 620 -354 9 1016 1381 252 70 54 chr6 56556277 56556489 -92960548 + RMER5 LTR ERV1 1 220 -314 9 1016 1311 152 44 40 chr6 56556489 56556764 -92960273 + L1Md_F3 LINE L1 6309 6584 0 9 1016 1381 252 70 54 chr6 56556764 56557067 -92959970 + RMER5 LTR ERV1 221 524 -10 9 1016 664 264 39 9 chr6 56557055 56557284 -92959753 + RCHARR1 DNA MER1_type 628 863 -111 9 1016 1698 77 46 8 chr6 56557507 56557744 -92959293 - L1Md_F2 LINE L1 -12 6570 6325 9 1016 2472 153 76 40 chr6 56557852 56558302 -92958735 + RMER4A LTR ERVK 1 466 0 9 1016 273 340 0 20 chr6 56558678 56558780 -92958257 + MLT1A LTR MaLR 63 162 -212 9 1016 1715 238 84 90 chr6 56560602 56561233 -92955804 + RMER1A Other Other 1 517 -549 9 1016 705 34 0 0 chr6 56561233 56561321 -92955716 + (CA)n Simple_repeat Simple_repeat 1 88 0 9 1016 2268 234 24 83 chr6 56561321 56562300 -92954737 + RMER1B Other Other 18 1055 -11 9 1016 856 240 24 5 chr6 56562325 56562534 -92954503 + B3 SINE B2 1 213 -3 1 1016 267 206 114 0 chr6 56562541 56562672 -92954365 + L1MB8 LINE L1 5219 5364 -782 1 1016 332 258 71 26 chr6 56562670 56562853 -92954184 - L1M4 LINE L1 -544 5640 5451 1 1016 1303 215 89 31 chr6 56562955 56563305 -92953732 + ORR1D1 LTR MaLR 1 370 -4 1 1016 574 225 0 72 chr6 56563310 56563449 -92953588 + ORR1D1-int LTR MaLR 3 131 -1239 1 1016 824 308 80 53 chr6 56563454 56564129 -92952908 + L1MB8 LINE L1 5388 6080 -98 1 1016 406 289 178 48 chr6 56564165 56564631 -92952406 + MLT1G LTR MaLR 22 589 -2 1 1016 222 339 172 8 chr6 56565976 56566098 -92950939 - MIR SINE MIR -117 145 4 1 1016 214 217 0 28 chr6 56566929 56567000 -92950037 + A-rich Low_complexity Low_complexity 5 73 0 1 1016 233 272 70 65 chr6 56567491 56567676 -92949361 + L2 LINE L2 1703 1888 -1531 1 1016 237 340 46 20 chr6 56568023 56568176 -92948861 + L2 LINE L2 2429 2585 -834 1 1016 3936 204 49 30 chr6 56568177 56569282 -92947755 - RMER1A Other Other 0 1030 34 1 1016 265 306 164 0 chr6 56569509 56569666 -92947371 - MIR SINE MIR -66 202 14 1 1016 330 188 30 0 chr6 56569835 56569936 -92947101 + (TGGA)n Simple_repeat Simple_repeat 1 104 0 1 1016 265 342 35 0 chr6 56570013 56570127 -92946910 + MIRb SINE MIR 33 150 -118 1 1016 2322 151 75 29 chr6 56570854 56570968 -92946069 - Lx9 LINE L1 -7 7637 7519 1 1016 943 176 21 21 chr6 56570968 56571159 -92945878 - B2_Mm2 SINE B2 -3 192 2 1 1016 2322 151 75 29 chr6 56571159 56571174 -92945863 - Lx9 LINE L1 -126 7518 7490 1 1016 195 129 0 0 chr6 56571174 56571205 -92945832 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1016 2322 151 75 29 chr6 56571205 56571530 -92945507 - Lx9 LINE L1 -155 7489 7163 1 1016 410 290 82 7 chr6 56571621 56571767 -92945270 - MER5A1 DNA MER1_type -3 163 7 1 1016 274 192 39 0 chr6 56573313 56573372 -92943665 + A-rich Low_complexity Low_complexity 2 63 0 1 1016 1052 131 6 0 chr6 56573372 56573547 -92943490 + (GAGAA)n Simple_repeat Simple_repeat 2 177 0 1 1016 274 192 39 0 chr6 56573547 56573565 -92943472 + A-rich Low_complexity Low_complexity 64 81 0 1 1016 719 259 0 12 chr6 56573727 56573891 -92943146 + RLTR40 LTR ERVK 656 817 0 1 1016 2099 219 55 14 chr6 56573891 56574401 -92942636 - L1_Rod LINE L1 -2792 3055 2525 1 1016 312 102 0 0 chr6 56574428 56574477 -92942560 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1016 666 0 0 0 chr6 56575409 56575483 -92941554 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 1 1016 216 238 119 8 chr6 56575663 56575778 -92941259 + MIR SINE MIR 140 266 -2 1 1016 1583 160 54 75 chr6 56575934 56576320 -92940717 + ORR1C1 LTR MaLR 1 378 0 1 1016 650 297 125 19 chr6 56576529 56576793 -92940244 + MER2 DNA MER2_type 1 292 -53 1 1016 1058 272 13 92 chr6 56576802 56576989 -92940048 + MTE2a LTR MaLR 10 168 -211 1 1016 2867 91 30 26 chr6 56576989 56577416 -92939621 - L1Md_F2 LINE L1 -9 6573 6145 1 1016 1058 272 13 92 chr6 56577416 56577620 -92939417 + MTE2a LTR MaLR 169 369 -10 1 1016 239 304 80 0 chr6 56577796 56577921 -92939116 - L1MEd LINE L1 -5409 710 576 1 1016 974 176 205 22 chr6 56578109 56578387 -92938650 - ORR1A4 LTR MaLR 0 329 1 1 1016 216 235 0 0 chr6 56578512 56578580 -92938457 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1016 462 286 234 0 chr6 56578710 56578885 -92938152 + B3 SINE B2 1 216 0 1 1016 414 281 0 0 chr6 56580254 56580350 -92936687 + PB1D10 SINE Alu 6 101 -16 1 1016 522 0 0 0 chr6 56580350 56580408 -92936629 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1016 201 108 0 0 chr6 56580850 56580887 -92936150 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1016 291 325 86 37 chr6 56580984 56581332 -92935705 + L1M5 LINE L1 3591 3955 -2191 1 1016 1848 40 0 9 chr6 56581367 56581594 -92935443 - L1_Mus1 LINE L1 -615 5952 5728 1 1016 2267 41 4 0 chr6 56581594 56581863 -92935174 + L1_Mus1 LINE L1 6298 6567 0 1 1016 396 0 0 0 chr6 56582337 56582381 -92934656 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1016 802 183 110 31 chr6 56582481 56582735 -92934302 + RMER17C LTR ERVK 137 410 0 1 1016 3003 26 3 3 chr6 56583053 56583399 -92933638 - ORR1A1 LTR MaLR 0 346 1 1 1016 258 254 92 99 chr6 56583704 56583835 -92933202 + RMER17C-int LTR ERVK 395 524 -2714 1 1016 509 322 5 24 chr6 56583790 56583997 -92933040 + RodERV21-int LTR ERV1 709 911 -4080 1 1016 2144 142 143 39 chr6 56584267 56584749 -92932288 + RMER17C-int LTR ERVK 1485 2016 -1222 1 1016 616 152 62 0 chr6 56584748 56584860 -92932177 + RMER17C-int LTR ERVK 2170 2288 -950 1 1016 2478 148 176 13 chr6 56584855 56585421 -92931616 + RMER17C-int LTR ERVK 2581 3237 -1 1 1016 1705 160 125 16 chr6 56585421 56585596 -92931441 + RMER17C LTR ERVK 1 213 -197 1 1016 855 70 0 0 chr6 56585596 56585711 -92931326 + (TC)n Simple_repeat Simple_repeat 2 116 0 1 1016 1705 160 125 16 chr6 56585711 56585903 -92931134 + RMER17C LTR ERVK 214 408 -2 1 1016 391 205 13 13 chr6 56586064 56586143 -92930894 + ETnERV2-int LTR ERVK 2462 2540 -4866 1 1016 1260 101 123 95 chr6 56586143 56586427 -92930610 + RMER16 LTR ERVK 242 533 0 1 1016 264 282 25 13 chr6 56586561 56586640 -92930397 + PB1D10 SINE Alu 31 110 -7 1 1016 412 321 21 35 chr6 56588243 56588385 -92928652 - RSINE1 SINE B4 -10 155 16 1 1016 625 316 9 31 chr6 56589042 56589264 -92927773 - B4A SINE B4 -66 226 10 1 1016 415 269 22 30 chr6 56589564 56589698 -92927339 - RSINE1 SINE B4 -30 135 3 1 1016 1156 68 0 0 chr6 56589845 56589992 -92927045 + B1_Mus1 SINE Alu 2 148 0 1 1016 318 106 0 0 chr6 56589993 56590040 -92926997 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1016 203 269 30 0 chr6 56590042 56590109 -92926928 + (TATG)n Simple_repeat Simple_repeat 2 70 0 1 1016 251 345 146 0 chr6 56590214 56590324 -92926713 + MIR SINE MIR 47 172 -90 1 1016 620 237 58 13 chr6 56590441 56590595 -92926442 + RSINE1 SINE B4 3 163 -2 1 1016 239 254 63 0 chr6 56590658 56590721 -92926316 + PB1D10 SINE Alu 51 117 0 1 1016 1233 235 37 17 chr6 56590867 56591222 -92925815 + MTEb LTR MaLR 14 375 -4 1 1016 798 274 64 28 chr6 56591863 56592189 -92924848 + LTR48B LTR ERV1 283 620 -24 1 1016 550 143 9 62 chr6 56592535 56592624 -92924413 + ORR1C2 LTR MaLR 4 89 -295 1 1016 2920 56 5 36 chr6 56592624 56593013 -92924024 + L1Md_F2 LINE L1 6195 6571 -11 1 1016 550 143 9 62 chr6 56593013 56593035 -92924002 + ORR1C2 LTR MaLR 90 109 -275 1 1016 2261 141 12 58 chr6 56593172 56593572 -92923465 - ORR1C2 LTR MaLR 0 384 3 1 1016 25 0 0 0 chr6 56593888 56593913 -92923124 + AT_rich Low_complexity Low_complexity 1 25 0 1 1016 257 310 30 0 chr6 56594095 56594195 -92922842 - MER5A DNA MER1_type -48 141 39 1 1016 316 328 33 1 chr6 56594299 56594438 -92922599 + MIRb SINE MIR 31 174 -34 1 1016 382 321 21 0 chr6 56594695 56594835 -92922202 - LTR82B Low_complexity ERVL -439 391 249 1 1016 1911 206 43 8 chr6 56595527 56595919 -92921118 - MTD LTR MaLR -13 406 1 1 1016 277 312 45 18 chr6 56596782 56596893 -92920144 + MER5A DNA MER1_type 6 119 -70 1 1016 234 227 0 0 chr6 56597413 56597488 -92919549 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1016 757 350 27 34 chr6 56597509 56597802 -92919235 - B4A SINE B4 -1 291 1 1 1016 581 302 98 45 chr6 56598298 56598562 -92918475 + B4A SINE B4 14 291 -1 1 1016 453 36 0 0 chr6 56598570 56598625 -92918412 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 1016 200 154 0 0 chr6 56599088 56599127 -92917910 + MIR SINE MIR 109 147 -115 1 1016 228 135 0 0 chr6 56599408 56599445 -92917592 + (TCC)n Simple_repeat Simple_repeat 2 38 0 1 1016 545 216 7 69 chr6 56599460 56599604 -92917433 - B1_Mur1 SINE Alu 0 149 15 1 1016 505 256 17 0 chr6 56599605 56599722 -92917315 + PB1D9 SINE Alu 2 120 0 1 1016 369 162 0 0 chr6 56599753 56599821 -92917216 + GA-rich Low_complexity Low_complexity 3 70 0 1 1016 3139 17 0 0 chr6 56599841 56600187 -92916850 + ORR1A0 LTR MaLR 1 346 0 1 1016 207 0 0 0 chr6 56601270 56601293 -92915744 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1016 241 335 144 7 chr6 56601398 56601551 -92915486 - MIRc SINE MIR -7 261 88 1 1016 387 0 0 0 chr6 56601642 56601685 -92915352 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1016 463 289 109 59 chr6 56602834 56603055 -92913982 - Lx8 LINE L1 -7 7466 7235 1 1016 195 303 69 20 chr6 56603481 56603582 -92913455 - MIRc SINE MIR -146 122 17 1 1016 729 300 132 39 chr6 56604123 56604585 -92912452 - MLT2B1 LTR ERVL -9 511 7 1 1016 591 219 0 38 chr6 56604807 56604940 -92912097 + Lx5 LINE L1 5875 6002 -1048 1 1016 1268 204 7 4 chr6 56604940 56605220 -92911817 + ORR1D2-int LTR MaLR 1090 1370 0 1 1016 598 294 194 4 chr6 56605220 56605473 -92911564 + ORR1D2 LTR MaLR 1 301 -69 1 1016 498 301 29 25 chr6 56605473 56605677 -92911360 - RMER15 LTR ERVL -113 462 258 1 1016 763 197 66 0 chr6 56605874 56606011 -92911026 + B1_Mur1 SINE Alu 3 148 -1 1 1016 607 282 6 37 chr6 56606052 56606113 -92910924 + Lx8 LINE L1 6196 6255 -1218 1 1016 1268 272 22 8 chr6 56606113 56606476 -92910561 - ORR1D2 LTR MaLR 0 370 3 1 1016 607 282 6 37 chr6 56606476 56606576 -92910461 + Lx8 LINE L1 6256 6352 -1121 1 1016 475 292 0 0 chr6 56606575 56606681 -92910356 + Lx8 LINE L1 6522 6627 -846 1 1016 313 288 0 0 chr6 56606681 56606754 -92910283 + Lx8 LINE L1 6577 6649 -824 1 1016 943 245 56 12 chr6 56606745 56607061 -92909976 + L1MA4 LINE L1 5665 5986 -254 1 1016 206 279 0 0 chr6 56607062 56607105 -92909932 + (CGA)n Simple_repeat Simple_repeat 2 44 0 1 1016 580 273 58 62 chr6 56607457 56607527 -92909510 + MER92B LTR ERV1 1 68 -568 1 1016 420 292 169 68 chr6 56607527 56607865 -92909172 - MLT1A LTR MaLR -2 372 1 1 1016 580 273 58 62 chr6 56607865 56608036 -92909001 + MER92B LTR ERV1 69 241 -395 1 1016 1141 255 88 38 chr6 56608035 56608479 -92908558 + RMER5 LTR ERV1 69 534 0 1 1016 33 56 0 0 chr6 56610361 56610415 -92906622 + AT_rich Low_complexity Low_complexity 1 54 0 1 1016 4737 71 29 2 chr6 56610922 56611546 -92905491 - L1Md_F2 LINE L1 -2 6580 5940 1 1016 405 0 0 0 chr6 56611778 56611823 -92905214 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1016 21 0 0 0 chr6 56611953 56611974 -92905063 + AT_rich Low_complexity Low_complexity 1 21 0 1 1016 2910 126 108 12 chr6 56612064 56612554 -92904483 - Lx LINE L1 -2 6652 6116 1 1016 242 94 0 0 chr6 56612554 56612586 -92904451 + Lx2A LINE L1 6344 6375 -633 1 1016 865 299 49 31 chr6 56612805 56613092 -92903945 - B4 SINE B4 0 292 1 1 1016 761 303 55 14 chr6 56613989 56614264 -92902773 + B4A SINE B4 4 289 -3 2 1016 432 0 0 0 chr6 56614264 56614312 -92902725 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1016 204 286 13 13 chr6 56614324 56614402 -92902635 + GA-rich Low_complexity Low_complexity 1 78 0 2 1016 431 296 28 21 chr6 56614771 56614916 -92902121 - B1F2 SINE Alu -2 147 2 2 1016 934 171 85 5 chr6 56615357 56615557 -92901480 - Lx5 LINE L1 0 7050 6835 2 1016 1581 314 60 57 chr6 56615556 56616335 -92900702 + Lx8 LINE L1 6692 7473 0 2 1016 608 229 40 111 chr6 56616520 56616583 -92900454 - B3 SINE B2 -6 210 152 2 1016 2145 166 69 35 chr6 56616583 56616989 -92900048 + MTC LTR MaLR 1 420 -1 2 1016 608 229 40 111 chr6 56616989 56617151 -92899886 - B3 SINE B2 -65 151 1 2 1016 23 0 0 0 chr6 56617377 56617400 -92899637 + AT_rich Low_complexity Low_complexity 1 23 0 2 1016 604 12 48 0 chr6 56618035 56618118 -92898919 + (CAGAGA)n Simple_repeat Simple_repeat 3 89 0 2 1016 316 221 29 0 chr6 56618307 56618375 -92898662 + ORR1E LTR MaLR 1 70 -289 2 1016 543 305 7 7 chr6 56618627 56618769 -92898268 + RSINE1 SINE B4 3 144 -21 2 1016 436 340 50 10 chr6 56618787 56618989 -92898048 + MTE-int LTR MaLR 1 210 -1370 2 1016 597 215 0 0 chr6 56619190 56619297 -92897740 + RMER1B Other Other 287 393 -673 2 1016 3732 165 77 17 chr6 56619387 56620138 -92896899 + RMER19B LTR ERVK 107 902 0 2 1016 199 315 176 34 chr6 56620630 56620778 -92896259 - MIRb SINE MIR -97 171 3 2 1016 1309 81 48 21 chr6 56621096 56621285 -92895752 + B2_Mm2 SINE B2 2 195 0 2 1016 350 167 36 36 chr6 56622052 56622164 -92894873 + GA-rich Low_complexity Low_complexity 3 114 0 2 1016 23 33 0 0 chr6 56622167 56622197 -92894840 + AT_rich Low_complexity Low_complexity 1 30 0 2 15 255 323 134 75 chr6 56622894 56623199 -92893838 - MLT1H2 LTR MaLR -111 378 56 2 1017 455 304 29 0 chr6 56623348 56623486 -92893551 + B1_Mur1 SINE Alu 2 143 -6 2 1017 543 257 65 22 chr6 56623902 56624041 -92892996 + ID_B1 SINE B4 69 213 -11 2 1017 271 280 72 77 chr6 56624073 56624378 -92892659 + Lx9 LINE L1 5853 6281 -1363 2 1017 528 285 76 13 chr6 56625222 56625446 -92891591 - L1MB5 LINE L1 -8 6166 5929 2 1017 250 292 0 58 chr6 56625473 56625542 -92891495 + B4 SINE B4 36 100 -192 2 1017 1373 78 15 30 chr6 56627908 56628105 -92888932 + B2_Mm2 SINE B2 2 195 0 2 1017 1995 149 0 71 chr6 56628185 56628539 -92888498 + ORR1A4 LTR MaLR 1 329 0 2 1017 235 329 27 0 chr6 56628585 56628658 -92888379 + PB1 SINE Alu 24 98 -29 2 1017 498 17 0 0 chr6 56628671 56628730 -92888307 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1017 527 289 82 73 chr6 56628782 56629002 -92888035 + ID_B1 SINE B4 3 224 0 2 1017 252 303 144 27 chr6 56629323 56629469 -92887568 - MIRc SINE MIR -54 214 52 2 1017 871 106 0 14 chr6 56629537 56629681 -92887356 + (TCC)n Simple_repeat Simple_repeat 1 142 0 2 1017 360 315 122 48 chr6 56630156 56630170 -92886867 + MT2A LTR ERVL 6 27 -506 2 1017 330 284 28 129 chr6 56630170 56630348 -92886689 + MTEa LTR MaLR 20 179 -200 2 1017 360 315 122 48 chr6 56630348 56630647 -92886390 + MT2A LTR ERVL 28 525 -8 2 1017 248 312 39 0 chr6 56631086 56631163 -92885874 - B1F SINE Alu -26 123 44 2 1017 544 268 0 16 chr6 56632955 56633084 -92883953 - ID_B1 SINE B4 -10 214 88 2 1017 342 0 0 0 chr6 56633094 56633132 -92883905 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1017 357 277 107 84 chr6 56633174 56633399 -92883638 - B4A SINE B4 -58 234 5 2 1017 1549 38 21 5 chr6 56633483 56633669 -92883368 + B2_Mm1t SINE B2 1 189 -4 2 1017 698 190 96 56 chr6 56633683 56633911 -92883126 - MTC-int LTR MaLR -6 1252 1013 2 1017 2328 88 12 59 chr6 56633911 56634248 -92882789 + ORR1A2 LTR MaLR 5 325 -2 2 1017 698 190 96 56 chr6 56634248 56634270 -92882767 - MTC-int LTR MaLR -246 1012 992 2 1017 674 226 0 0 chr6 56634266 56634390 -92882647 - B1_Mur1 SINE Alu -7 142 19 2 1017 707 272 36 40 chr6 56634410 56634663 -92882374 - MTC-int LTR MaLR -264 994 743 2 1017 366 269 123 52 chr6 56634765 56635091 -92881946 + L1M2 LINE L1 4658 5006 -1137 2 1017 684 159 29 36 chr6 56635248 56635385 -92881652 + B2_Mm2 SINE B2 1 136 -59 2 1017 373 36 18 18 chr6 56635402 56635458 -92881579 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 2 1017 354 315 25 20 chr6 56635462 56635666 -92881371 + L1M2 LINE L1 5153 5357 -786 2 1017 994 187 288 23 chr6 56635791 56636097 -92880940 + RMER1B Other Other 2 388 -678 2 1017 473 299 112 4 chr6 56636096 56636328 -92880709 + L1_Rod LINE L1 5591 5847 0 2 1017 245 284 41 31 chr6 56636364 56636462 -92880575 + RSINE1 SINE B4 10 108 -57 2 1017 205 146 20 20 chr6 56636844 56636893 -92880144 + T-rich Low_complexity Low_complexity 4 52 0 2 1017 3965 119 41 5 chr6 56636957 56637572 -92879465 - Lx2B LINE L1 -4 6996 6360 2 1017 305 47 23 0 chr6 56637784 56637827 -92879210 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 1017 334 254 0 0 chr6 56637850 56637921 -92879116 + PB1D9 SINE Alu 45 115 -5 2 1017 1020 91 0 29 chr6 56637922 56638092 -92878945 + (GGGGA)n Simple_repeat Simple_repeat 3 167 0 2 1017 23 33 0 0 chr6 56638251 56638281 -92878756 + AT_rich Low_complexity Low_complexity 1 30 0 2 1017 653 77 0 0 chr6 56638754 56638845 -92878192 + BC1_Mm scRNA scRNA 2 92 -60 2 1017 1154 189 0 26 chr6 56638967 56639200 -92877837 - Lx5 LINE L1 -522 6528 6302 2 1017 2532 211 43 0 chr6 56639199 56639663 -92877374 + Lx5 LINE L1 6567 7050 0 2 1017 275 325 51 74 chr6 56640501 56640677 -92876360 - MIRb SINE MIR -13 255 84 2 1017 252 339 50 42 chr6 56640718 56640838 -92876199 + B1F SINE Alu 15 135 -14 2 1017 257 156 0 22 chr6 56640854 56640900 -92876137 + ID2 SINE ID 8 52 -31 2 1017 685 192 35 25 chr6 56640943 56641114 -92875923 - B3 SINE B2 -4 191 16 2 1017 408 184 125 10 chr6 56641157 56641261 -92875776 + PB1D9 SINE Alu 5 120 0 2 1017 445 158 245 40 chr6 56641470 56641599 -92875438 - B1F SINE Alu 0 149 1 2 1017 2174 51 3 82 chr6 56642869 56643187 -92873850 + L1_Mus1 LINE L1 6275 6567 0 2 1017 561 216 72 0 chr6 56643335 56643460 -92873577 + B1_Mur2 SINE Alu 2 135 -14 2 1017 954 50 0 0 chr6 56643566 56643686 -92873351 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 2 1017 552 232 23 39 chr6 56643717 56643847 -92873190 - RSINE1 SINE B4 -30 135 8 2 1017 559 236 104 20 chr6 56643993 56644211 -92872826 - L1MB7 LINE L1 -71 6113 5886 2 1017 275 221 152 67 chr6 56644254 56644387 -92872650 - L1MB7 LINE L1 -460 5720 5575 2 1017 3169 32 167 0 chr6 56644387 56644794 -92872243 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1017 275 221 152 67 chr6 56644794 56644883 -92872154 - L1MB7 LINE L1 -606 5574 5479 2 1017 650 148 59 68 chr6 56644883 56645207 -92871830 + RLTR28 LTR ERVL 159 524 0 2 1017 448 234 44 53 chr6 56645285 56645398 -92871639 - B1F1 SINE Alu -29 120 9 2 1017 953 180 11 11 chr6 56645493 56645673 -92871364 - B3A SINE B2 -18 180 1 2 1017 2847 19 0 3 chr6 56646163 56646487 -92870550 + L1Md_F2 LINE L1 5264 5586 -297 2 1017 8401 34 2 2 chr6 56646487 56647471 -92869566 + L1Md_F2 LINE L1 5587 6570 -12 2 1017 25 0 0 0 chr6 56647471 56647496 -92869541 + AT_rich Low_complexity Low_complexity 1 25 0 2 1017 234 343 14 0 chr6 56648056 56648126 -92868911 + ID4_ SINE ID 1 71 -12 2 1017 214 162 28 42 chr6 56648476 56648547 -92868490 + (TTATA)n Simple_repeat Simple_repeat 4 73 0 2 1017 219 98 38 38 chr6 56648492 56648545 -92868492 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 2 1017 1092 262 109 12 chr6 56648716 56649056 -92867981 + MTE2b LTR MaLR 3 375 -4 2 1017 1167 55 0 0 chr6 56649076 56649222 -92867815 + B1_Mm SINE Alu 1 146 -1 2 1017 956 150 77 11 chr6 56649271 56649453 -92867584 - B2_Mm2 SINE B2 0 195 2 2 1017 303 214 57 0 chr6 56649472 56649542 -92867495 + PB1D10 SINE Alu 9 82 -35 2 1017 662 287 0 18 chr6 56650012 56650179 -92866858 + RSINE1 SINE B4 2 165 0 2 1017 470 187 47 0 chr6 56650236 56650343 -92866694 + B3 SINE B2 105 216 0 2 1017 870 195 53 10 chr6 56650597 56650804 -92866233 + B3 SINE B2 1 216 0 2 1017 3514 28 0 2 chr6 56651512 56651909 -92865128 + MTA_Mm LTR MaLR 1 396 0 2 1017 228 222 167 0 chr6 56652254 56652308 -92864729 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 2 1017 911 207 233 57 chr6 56652574 56652739 -92864298 + ORR1D1 LTR MaLR 1 183 -191 2 1017 351 0 0 0 chr6 56652739 56652778 -92864259 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1017 911 207 233 57 chr6 56652778 56652930 -92864107 + ORR1D1 LTR MaLR 184 374 0 2 1017 23 0 0 0 chr6 56652968 56652991 -92864046 + AT_rich Low_complexity Low_complexity 1 23 0 2 1017 183 80 0 0 chr6 56653517 56653542 -92863495 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2 1017 1420 96 70 27 chr6 56653542 56653789 -92863248 - Lx2A1 LINE L1 -9 6999 6739 2 1017 243 0 0 0 chr6 56655134 56655161 -92861876 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1017 219 310 0 0 chr6 56655465 56655523 -92861514 + ID4 SINE ID 13 70 -13 2 1017 293 0 27 0 chr6 56655549 56655586 -92861451 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 1017 505 274 53 33 chr6 56656605 56656756 -92860281 - RSINE1 SINE B4 -10 155 2 2 1017 243 0 0 0 chr6 56656865 56656892 -92860145 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 2 1017 1610 161 64 48 chr6 56656919 56656955 -92860082 - ORR1C2 LTR MaLR 0 384 355 2 1017 3778 37 5 0 chr6 56656955 56657389 -92859648 - RLTR10C LTR ERVK 0 436 1 2 1017 1610 161 64 48 chr6 56657389 56657725 -92859312 - ORR1C2 LTR MaLR -30 354 6 2 1017 755 265 36 0 chr6 56657731 56657897 -92859140 - B3 SINE B2 -42 174 3 2 1017 196 308 0 0 chr6 56657908 56657973 -92859064 + MIRb SINE MIR 176 240 -28 2 1017 5305 93 62 98 chr6 56658005 56658932 -92858105 - RLTR13B1 LTR ERVK 0 893 1 2 1017 366 346 8 16 chr6 56659035 56659164 -92857873 + RSINE1 SINE B4 2 129 -36 3 1017 326 64 0 0 chr6 56659339 56659386 -92857651 + ORR1C2 LTR MaLR 338 384 0 3 1017 4382 43 83 111 chr6 56659647 56660320 -92856717 - RLTR6_Mm LTR ERV1 0 654 1 3 1017 200 152 21 21 chr6 56660320 56660360 -92856677 + T-rich Low_complexity Low_complexity 2 41 0 3 1017 553 224 34 20 chr6 56660360 56660506 -92856531 - B1F SINE Alu 0 149 2 3 1017 274 211 111 17 chr6 56661106 56661184 -92855853 + B4A SINE B4 11 91 -201 3 1017 1008 61 76 0 chr6 56661184 56661315 -92855722 + B1_Mus1 SINE Alu 2 142 -6 3 1017 405 0 0 0 chr6 56661319 56661364 -92855673 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1017 468 0 0 0 chr6 56661364 56661416 -92855621 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 3 1017 221 328 0 0 chr6 56661417 56661478 -92855559 + B1F SINE Alu 1 61 -88 3 1017 757 233 93 0 chr6 56661434 56661606 -92855431 + B4A SINE B4 103 290 -2 3 1017 1191 62 7 0 chr6 56662205 56662350 -92854687 - B1_Mm SINE Alu -1 146 1 3 1017 4010 109 26 36 chr6 56662665 56663272 -92853765 - MT2B LTR ERVL 0 601 1 3 1017 423 0 0 0 chr6 56663551 56663598 -92853439 + (CAT)n Simple_repeat Simple_repeat 2 48 0 3 1017 780 143 60 8 chr6 56663622 56663756 -92853281 - B1_Mus2 SINE Alu -6 141 1 3 1017 1047 101 0 35 chr6 56663822 56663996 -92853041 - B2_Mm2 SINE B2 -26 169 2 3 1017 273 257 42 14 chr6 56664013 56664084 -92852953 - B1F SINE Alu -53 96 24 3 1017 1253 20 7 0 chr6 56664135 56664281 -92852756 + B1_Mus2 SINE Alu 1 147 0 3 1017 207 0 0 0 chr6 56664281 56664304 -92852733 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1017 231 188 0 0 chr6 56664643 56664691 -92852346 + (CCCCG)n Simple_repeat Simple_repeat 5 52 0 3 1017 266 279 95 9 chr6 56666019 56666124 -92850913 + PB1D10 SINE Alu 3 116 -1 3 1017 268 180 0 164 chr6 56666990 56667063 -92849974 + ID2 SINE ID 3 63 -20 3 1017 471 195 0 35 chr6 56667043 56667128 -92849909 + B1_Mus2 SINE Alu 53 134 -13 3 1017 216 0 0 0 chr6 56667128 56667152 -92849885 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1017 1186 48 0 0 chr6 56667154 56667300 -92849737 - B1_Mm SINE Alu 0 147 2 3 1017 1264 259 63 40 chr6 56667397 56667952 -92849085 - Lx9 LINE L1 -55 7589 7022 3 1017 1214 27 0 26 chr6 56667975 56668126 -92848911 - B1_Mus2 SINE Alu 0 147 1 3 1017 420 20 0 0 chr6 56668180 56668229 -92848808 + (TAA)n Simple_repeat Simple_repeat 2 50 0 3 1017 381 326 39 52 chr6 56668234 56668389 -92848648 - RSINE1 SINE B4 -2 163 11 3 1017 319 325 58 61 chr6 56668537 56668848 -92848189 - Lx8 LINE L1 -10 7463 7154 3 1017 541 151 0 0 chr6 56668861 56668947 -92848090 - B1_Mus2 SINE Alu 0 147 62 3 1017 779 252 39 10 chr6 56669001 56669205 -92847832 - B3 SINE B2 -6 210 1 3 1017 226 200 0 0 chr6 56669323 56669354 -92847683 + A-rich Low_complexity Low_complexity 5 35 0 3 1017 652 196 75 0 chr6 56669354 56669487 -92847550 + B1_Mur4 SINE Alu 1 143 -7 3 1017 226 200 0 0 chr6 56669487 56669510 -92847527 + A-rich Low_complexity Low_complexity 36 58 0 3 1017 252 0 0 0 chr6 56669510 56669538 -92847499 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1017 268 267 71 102 chr6 56669673 56669869 -92847168 + Lx9 LINE L1 7316 7505 -139 3 1017 1574 157 92 0 chr6 56669934 56670227 -92846810 + IAPEY3_LTR LTR ERVK 1 320 -12 3 1017 746 203 29 0 chr6 56670279 56670417 -92846620 + B1_Mur1 SINE Alu 1 142 -7 3 1017 301 311 155 0 chr6 56670576 56670679 -92846358 - RSINE1 SINE B4 -46 119 1 3 1017 465 316 15 8 chr6 56671021 56671155 -92845882 - RSINE1 SINE B4 -28 137 3 3 1017 286 227 0 0 chr6 56671469 56671535 -92845502 + B3 SINE B2 151 216 0 3 1017 316 360 49 56 chr6 56671893 56672037 -92845000 - MER21B LTR ERV1 -169 694 552 3 1017 959 320 116 37 chr6 56672044 56672423 -92844614 - MER21B LTR ERV1 -415 448 40 3 1017 1547 39 6 0 chr6 56672556 56672738 -92844299 + B2_Mm1t SINE B2 2 184 -9 3 1017 1397 69 21 5 chr6 56672751 56672941 -92844096 + B2_Mm2 SINE B2 2 194 -1 3 1017 333 281 146 0 chr6 56673085 56673174 -92843863 - Tigger16b DNA Tigger -6 331 230 3 1017 1171 68 0 0 chr6 56674049 56674195 -92842842 - B1_Mus2 SINE Alu 0 147 2 3 1017 229 154 44 44 chr6 56674670 56674738 -92842299 - L1MC5 LINE L1 -285 7676 7609 3 1017 493 240 8 23 chr6 56675381 56675537 -92841500 - L1M1 LINE L1 -547 5631 5481 3 1017 239 253 129 62 chr6 56675753 56675947 -92841090 - L1_Mur3 LINE L1 -3509 2371 2165 3 1017 527 200 118 0 chr6 56676967 56677077 -92839960 - ID_B1 SINE B4 -5 219 97 3 1017 318 250 171 39 chr6 56677077 56677096 -92839941 - B1_Mus1 SINE Alu -2 146 1 3 1017 473 194 104 21 chr6 56678405 56678520 -92838517 + B3A SINE B2 10 126 -69 3 1017 303 255 87 10 chr6 56679476 56679598 -92837439 - MER3 DNA MER1_type -100 109 2 3 1017 780 233 110 11 chr6 56680178 56680360 -92836677 - ID_B1 SINE B4 -24 200 1 3 1017 22 70 0 0 chr6 56680526 56680569 -92836468 + AT_rich Low_complexity Low_complexity 1 43 0 3 1017 685 254 73 23 chr6 56681310 56681487 -92835550 - B3A SINE B2 0 198 13 3 1017 485 232 90 21 chr6 56681487 56681632 -92835405 + MER58A DNA MER1_type 58 212 -12 3 1017 1021 232 19 5 chr6 56681986 56682198 -92834839 - B3 SINE B2 0 216 2 3 1017 346 304 32 21 chr6 56682359 56682453 -92834584 - PB1D10 SINE Alu -14 103 9 3 1017 996 251 25 32 chr6 56682640 56682920 -92834117 + B4A SINE B4 1 278 -14 3 1017 829 233 90 35 chr6 56682982 56683182 -92833855 + B3 SINE B2 1 211 -5 3 1017 446 317 0 0 chr6 56683238 56683342 -92833695 + B1F1 SINE Alu 3 106 -43 3 1017 1072 120 74 0 chr6 56683428 56683603 -92833434 - B2_Mm2 SINE B2 -7 188 1 3 1017 660 293 24 126 chr6 56683876 56684083 -92832954 - B3A SINE B2 0 198 2 3 1017 426 311 126 35 chr6 56684178 56684408 -92832629 - B4A SINE B4 0 292 42 3 1017 438 189 84 0 chr6 56684418 56684513 -92832524 - U6 snRNA snRNA -1 106 4 3 1017 23 97 0 0 chr6 56684800 56684872 -92832165 + AT_rich Low_complexity Low_complexity 1 72 0 3 1017 261 0 0 0 chr6 56684988 56685017 -92832020 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3 1017 1004 194 22 0 chr6 56685077 56685257 -92831780 - Lx5 LINE L1 -124 6926 6743 3 1017 398 231 159 40 chr6 56685621 56685747 -92831290 - RSINE1 SINE B4 -23 142 2 3 1017 243 0 0 0 chr6 56685750 56685777 -92831260 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1017 3109 47 0 5 chr6 56685780 56686163 -92830874 - L1_Mus1 LINE L1 0 6567 6187 3 1017 493 255 20 0 chr6 56686169 56686267 -92830770 - B1_Mur3 SINE Alu -49 100 1 3 1017 513 149 175 30 chr6 56687090 56687256 -92829781 + MTC-int LTR MaLR 1067 1256 -2 3 1017 1529 209 122 3 chr6 56687274 56687601 -92829436 + MTD LTR MaLR 46 411 -8 3 1017 709 264 62 34 chr6 56688188 56688355 -92828682 - B3 SINE B2 -1 215 41 3 1017 677 156 109 15 chr6 56688355 56688492 -92828545 - B1_Mur4 SINE Alu 0 150 1 3 1017 709 264 62 34 chr6 56688492 56688532 -92828505 - B3 SINE B2 -176 40 2 3 1017 1243 92 46 0 chr6 56688671 56688844 -92828193 + B2_Mm2 SINE B2 1 181 -14 3 1017 319 304 67 29 chr6 56689321 56689426 -92827611 + PB1D10 SINE Alu 9 117 0 3 1017 321 220 109 8 chr6 56689501 56689620 -92827417 - L1M3 LINE L1 -363 5808 5678 3 1017 240 241 35 0 chr6 56690007 56690065 -92826972 + ID4_ SINE ID 24 83 0 3 1017 1048 53 8 0 chr6 56690258 56690389 -92826648 - B1_Mus1 SINE Alu -15 133 2 3 1017 327 100 21 62 chr6 56691624 56691720 -92825317 + (TTTG)n Simple_repeat Simple_repeat 1 92 0 3 1017 1265 27 0 0 chr6 56691720 56691867 -92825170 - B1_Mm SINE Alu 0 147 1 3 1017 796 150 29 22 chr6 56691870 56692006 -92825031 - B1_Mus1 SINE Alu -1 147 11 3 1017 404 340 56 12 chr6 56692008 56692169 -92824868 - MIR SINE MIR -50 212 45 3 1017 26 30 0 0 chr6 56692299 56692332 -92824705 + AT_rich Low_complexity Low_complexity 1 33 0 3 1017 768 284 46 21 chr6 56692912 56693106 -92823931 - B3 SINE B2 -11 205 7 3 1017 1295 104 11 0 chr6 56693562 56693745 -92823292 + B2_Mm1t SINE B2 1 185 -8 3 1017 957 47 15 15 chr6 56694029 56694159 -92822878 - B1_Mus1 SINE Alu 0 148 19 3 1017 198 0 0 0 chr6 56694161 56694183 -92822854 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1017 877 179 0 14 chr6 56694992 56695134 -92821903 - B1_Mus1 SINE Alu -7 141 2 3 1017 228 244 254 50 chr6 56695149 56695330 -92821707 - MIR SINE MIR -26 236 19 3 1017 294 257 32 89 chr6 56695460 56695584 -92821453 + PB1D10 SINE Alu 1 117 0 3 1017 24 0 0 0 chr6 56695941 56695965 -92821072 + AT_rich Low_complexity Low_complexity 1 24 0 3 1017 316 360 35 28 chr6 56696004 56696147 -92820890 - MIR3 SINE MIR -32 176 33 3 1017 642 178 62 8 chr6 56696463 56696593 -92820444 - B1_Mur1 SINE Alu -12 137 1 3 1017 30635 9 1 0 chr6 56696791 56701130 -92815907 - L1Md_A LINE L1 0 6582 2236 3 1017 306 267 53 13 chr6 56701689 56701765 -92815272 + B1F SINE Alu 1 79 -70 3 1017 401 211 193 83 chr6 56701779 56701960 -92815077 + Lx9 LINE L1 7245 7445 -199 3 1017 446 187 32 8 chr6 56701998 56702122 -92814915 + Lx9 LINE L1 7516 7642 -2 3 1017 230 220 0 33 chr6 56704172 56704233 -92812804 + CT-rich Low_complexity Low_complexity 1 59 0 4 1017 454 226 43 0 chr6 56704243 56704336 -92812701 - PB1D7 SINE Alu 0 120 24 4 1017 434 259 9 1 chr6 56704342 56704480 -92812557 + L1M5 LINE L1 3536 3675 -2471 4 1017 656 192 8 32 chr6 56704594 56704718 -92812319 - B1_Mus1 SINE Alu -20 128 8 4 1017 850 287 77 48 chr6 56704742 56705079 -92811958 - ORR1E LTR MaLR 0 359 13 4 1017 815 275 142 28 chr6 56705362 56705692 -92811345 - Tigger7 DNA MER2_type -2017 474 277 4 1017 1312 209 169 11 chr6 56705692 56706054 -92810983 - MTD LTR MaLR 0 419 1 4 1017 815 294 149 63 chr6 56706054 56706309 -92810728 - Tigger7 DNA MER2_type -2215 276 9 4 1017 187 333 49 12 chr6 56706489 56706516 -92810521 - MER5B DNA MER1_type -83 95 70 4 1017 731 222 40 23 chr6 56706516 56706691 -92810346 - B3A SINE B2 -16 182 5 4 1017 187 333 49 12 chr6 56706691 56706745 -92810292 - MER5B DNA MER1_type -109 69 13 4 1017 1200 54 0 0 chr6 56706886 56707033 -92810004 - B1_Mm SINE Alu 0 147 1 4 1017 486 248 99 63 chr6 56708426 56708568 -92808469 + B4A SINE B4 3 149 -143 4 1017 339 313 0 46 chr6 56708577 56708664 -92808373 + RSINE1 SINE B4 83 165 0 4 1017 581 191 15 7 chr6 56712358 56712495 -92804542 + MYSERV16_I-int LTR ERVK 2044 2181 -145 4 1017 363 130 0 0 chr6 56712690 56712759 -92804278 + MYSERV16_I-int LTR ERVK 2183 2251 -75 4 1017 2358 203 41 51 chr6 56712819 56713384 -92803653 + RLTR20B1 LTR ERVK 1 559 -4 4 1017 622 293 37 37 chr6 56713481 56713672 -92803365 - B3A SINE B2 -4 194 4 4 1017 249 228 141 42 chr6 56713682 56713824 -92803213 - L1M5 LINE L1 -989 5157 5002 4 1017 2252 133 66 0 chr6 56715639 56716001 -92801036 - ORR1B1 LTR MaLR -8 386 1 4 1017 456 19 0 0 chr6 56716089 56716142 -92800895 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1017 1240 216 48 28 chr6 56716402 56716654 -92800383 - MTD LTR MaLR -162 257 1 4 1017 549 193 6 110 chr6 56716694 56716763 -92800274 - RCHARR1 DNA MER1_type -159 815 757 4 1017 666 194 78 14 chr6 56716763 56716904 -92800133 - B1_Mur4 SINE Alu 0 150 1 4 1017 549 193 6 110 chr6 56716904 56716997 -92800040 - RCHARR1 DNA MER1_type -218 756 670 4 1017 415 333 25 8 chr6 56717038 56717156 -92799881 - B3A SINE B2 -35 163 44 4 1017 198 0 0 0 chr6 56717240 56717262 -92799775 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1017 1065 63 0 27 chr6 56717262 56717408 -92799629 - B1_Mus2 SINE Alu 0 147 6 4 1017 298 233 25 8 chr6 56717306 56717427 -92799610 - ORR1B1-int LTR MaLR -755 754 632 4 1017 1059 144 60 16 chr6 56717441 56717625 -92799412 + B2_Mm2 SINE B2 2 193 -2 4 1017 507 157 0 0 chr6 56717736 56717825 -92799212 + CT-rich Low_complexity Low_complexity 2 90 0 4 1017 342 147 0 42 chr6 56717833 56717904 -92799133 - RSINE1 SINE B4 -25 140 73 4 1017 301 309 53 53 chr6 56717888 56718021 -92799016 - RSINE1 SINE B4 -24 141 9 4 1017 236 53 0 26 chr6 56718174 56718213 -92798824 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1017 371 99 0 2 chr6 56718213 56718274 -92798763 - B1_Mm SINE Alu -2 145 86 4 1017 389 245 381 0 chr6 56718289 56718428 -92798609 + ID_B1 SINE B4 33 224 0 4 1017 1154 44 0 0 chr6 56718432 56718569 -92798468 + B1_Mus1 SINE Alu 3 139 -9 4 1017 243 0 0 0 chr6 56718574 56718601 -92798436 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 4 1017 330 237 0 0 chr6 56718614 56718673 -92798364 + RSINE1 SINE B4 50 108 -57 4 1017 718 230 78 27 chr6 56718739 56718958 -92798079 - RCHARR1 DNA MER1_type -479 495 266 4 1017 914 138 7 33 chr6 56719428 56719578 -92797459 - B1_Mm SINE Alu 0 147 2 4 1017 207 0 0 0 chr6 56719617 56719640 -92797397 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 4 1017 309 151 0 0 chr6 56719648 56719701 -92797336 + T-rich Low_complexity Low_complexity 1 53 0 4 1017 1214 54 0 0 chr6 56719701 56719848 -92797189 - B1_Mus1 SINE Alu 0 148 2 4 1017 273 104 0 0 chr6 56719909 56719926 -92797111 + (CAAAAA)n Simple_repeat Simple_repeat 1 17 0 4 1017 1191 62 0 0 chr6 56719926 56720070 -92796967 + B1_Mus2 SINE Alu 1 144 -3 4 1017 273 104 0 0 chr6 56720070 56720100 -92796937 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 4 1017 321 301 46 46 chr6 56720259 56720367 -92796670 + RSINE1 SINE B4 9 116 -49 4 1017 486 250 149 6 chr6 56720409 56720590 -92796447 - L1MB7 LINE L1 -69 6115 5909 4 1017 310 316 96 48 chr6 56720590 56720756 -92796281 + ORR1E LTR MaLR 1 174 -185 4 1017 235 322 244 34 chr6 56721398 56721517 -92795520 - RSINE1 SINE B4 -16 149 6 4 1017 284 260 140 73 chr6 56721697 56721954 -92795083 - L1MA5 LINE L1 -366 5934 5660 4 1017 207 0 0 0 chr6 56722048 56722071 -92794966 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 4 1017 295 308 68 40 chr6 56722208 56722384 -92794653 - L1M2 LINE L1 -3754 3091 2911 4 1017 225 0 0 0 chr6 56722542 56722567 -92794470 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1017 1230 35 0 0 chr6 56722567 56722711 -92794326 - B1_Mm SINE Alu -3 144 1 4 1017 281 88 34 34 chr6 56722715 56722774 -92794263 - L1M2 LINE L1 -3933 2912 2854 4 1017 1651 166 67 89 chr6 56722784 56723175 -92793862 - ORR1C2 LTR MaLR 0 384 3 4 1017 475 298 56 16 chr6 56723191 56723443 -92793594 - L1M2 LINE L1 -4033 2816 2555 4 1017 216 135 0 0 chr6 56723445 56723482 -92793555 + (C)n Simple_repeat Simple_repeat 1 37 0 4 1017 345 332 60 5 chr6 56723562 56723762 -92793275 - L1M2 LINE L1 -4415 2434 2224 4 1017 22 0 0 0 chr6 56723895 56723917 -92793120 + AT_rich Low_complexity Low_complexity 1 22 0 4 1017 766 249 60 0 chr6 56723929 56724114 -92792923 - B3 SINE B2 -20 196 1 4 1017 461 266 20 65 chr6 56724132 56724285 -92792752 - RSINE1 SINE B4 0 165 20 4 1017 1315 103 108 0 chr6 56724459 56724662 -92792375 - URR1B DNA MER1_type 0 225 1 4 1017 322 186 253 11 chr6 56724859 56724946 -92792091 - PB1D10 SINE Alu 0 117 10 4 1017 242 216 54 0 chr6 56724958 56725032 -92792005 - L1M4 LINE L1 -2185 3961 3884 4 1017 692 73 0 9 chr6 56725047 56725158 -92791879 - L1_Mus4 LINE L1 -75 6561 6452 4 1017 608 254 5 77 chr6 56725239 56725435 -92791602 - B3 SINE B2 -34 182 1 4 1017 242 268 0 0 chr6 56725749 56725805 -92791232 - BLACKJACK DNA AcHobo -4 2940 2885 4 1017 180 0 0 0 chr6 56725841 56725861 -92791176 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1017 333 230 160 0 chr6 56726272 56726372 -92790665 - PB1D9 SINE Alu -2 118 3 4 1017 1039 196 56 37 chr6 56726399 56726669 -92790368 + MTD LTR MaLR 1 275 -144 4 1017 232 192 11 4 chr6 56726704 56726756 -92790281 + MTD LTR MaLR 365 421 0 4 1017 217 246 14 58 chr6 56726778 56726847 -92790190 + ID4_ SINE ID 8 73 -10 4 1017 450 0 0 0 chr6 56727338 56727388 -92789649 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1017 22 35 0 0 chr6 56727522 56727551 -92789486 + AT_rich Low_complexity Low_complexity 1 29 0 4 1017 1182 54 0 13 chr6 56728379 56728529 -92788508 + B1_Mus1 SINE Alu 1 148 0 4 1017 23 0 0 0 chr6 56730356 56730379 -92786658 + AT_rich Low_complexity Low_complexity 1 23 0 4 1017 767 136 17 0 chr6 56730854 56730972 -92786065 - PB1D9 SINE Alu 0 120 1 4 1017 24 0 0 0 chr6 56731450 56731474 -92785563 + AT_rich Low_complexity Low_complexity 1 24 0 4 1017 503 242 122 20 chr6 56732165 56732409 -92784628 + L1MB8 LINE L1 5782 6054 -125 4 1017 232 241 99 10 chr6 56732573 56732671 -92784366 - PB1D10 SINE Alu -36 111 4 4 1017 397 265 57 35 chr6 56732671 56732753 -92784284 - ID SINE ID -138 86 2 4 1017 252 246 0 0 chr6 56732868 56732925 -92784112 + L1MB8 LINE L1 6111 6167 -12 4 1017 486 227 82 15 chr6 56733026 56733160 -92783877 - B1_Mur2 SINE Alu -6 143 1 4 1017 437 243 84 39 chr6 56733210 56733364 -92783673 - RSINE1 SINE B4 -2 163 3 4 1017 831 116 0 0 chr6 56733454 56733575 -92783462 + B1_Mus1 SINE Alu 1 121 -27 4 1017 262 273 0 15 chr6 56733717 56733784 -92783253 + ID4 SINE ID 2 67 -16 4 1017 189 132 0 0 chr6 56734420 56734458 -92782579 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1017 369 307 17 17 chr6 56734704 56734836 -92782201 + PB1D7 SINE Alu 2 133 -16 4 1017 306 193 243 18 chr6 56734819 56734930 -92782107 + MTD LTR MaLR 219 354 -65 4 1017 540 291 52 26 chr6 56735481 56735636 -92781401 - RSINE1 SINE B4 -4 161 3 4 1017 186 71 0 0 chr6 56735660 56735688 -92781349 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1017 1133 114 37 16 chr6 56735690 56735877 -92781160 + B2_Mm2 SINE B2 1 191 -4 4 1017 302 312 60 43 chr6 56736030 56736147 -92780890 + B4A SINE B4 1 119 -173 4 1017 772 179 113 0 chr6 56736620 56736788 -92780249 + B3 SINE B2 3 189 -27 4 1017 630 211 125 10 chr6 56736807 56736999 -92780038 + B3 SINE B2 3 216 0 4 1017 593 299 0 7 chr6 56737145 56737293 -92779744 + RSINE1 SINE B4 7 153 -12 4 1017 23 54 0 0 chr6 56737300 56737337 -92779700 + AT_rich Low_complexity Low_complexity 1 37 0 4 1017 201 284 45 11 chr6 56737707 56737796 -92779241 + MER5B DNA MER1_type 24 115 -63 4 1017 773 110 17 8 chr6 56738003 56738122 -92778915 - PB1D9 SINE Alu 0 120 1 4 1017 226 111 28 0 chr6 56738376 56738412 -92778625 + MTE2a LTR MaLR 281 317 -62 4 1017 624 175 7 80 chr6 56738884 56739021 -92778016 + B1_Mur2 SINE Alu 23 149 0 4 1017 277 301 0 14 chr6 56740204 56740278 -92776759 - ID4 SINE ID -3 80 8 4 1017 808 240 206 4 chr6 56740592 56740864 -92776173 + MTE2b LTR MaLR 7 333 -46 4 1017 255 61 0 0 chr6 56740881 56740914 -92776123 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 4 1017 556 165 63 18 chr6 56740917 56741028 -92776009 - PB1D9 SINE Alu -4 116 1 4 1017 565 218 227 11 chr6 56741130 56741306 -92775731 + B3 SINE B2 1 214 -2 4 1017 27 73 0 0 chr6 56741307 56741362 -92775675 + AT_rich Low_complexity Low_complexity 1 55 0 4 1017 355 234 13 0 chr6 56742330 56742407 -92774630 + B1F SINE Alu 41 118 -31 5 1017 696 314 60 89 chr6 56742545 56742646 -92774391 + MTE2a LTR MaLR 30 121 -258 5 1017 1056 106 0 0 chr6 56742646 56742788 -92774249 + B1_Mus1 SINE Alu 1 142 -6 5 1017 189 0 0 0 chr6 56742792 56742813 -92774224 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1017 696 314 60 89 chr6 56742813 56743056 -92773981 + MTE2a LTR MaLR 122 359 -20 5 1017 226 132 0 0 chr6 56743059 56743097 -92773940 + B1F SINE Alu 112 149 0 5 1017 232 229 129 0 chr6 56743169 56743239 -92773798 + L1MA7 LINE L1 6166 6244 -47 5 1017 231 261 140 96 chr6 56743239 56743417 -92773620 + B2_Mm2 SINE B2 1 186 -9 5 1017 228 160 80 0 chr6 56743417 56743467 -92773570 + L1MA7 LINE L1 6238 6291 0 5 1017 306 73 0 0 chr6 56743566 56743607 -92773430 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1017 225 154 0 0 chr6 56743888 56743927 -92773110 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1017 433 305 57 0 chr6 56744206 56744347 -92772690 - B1F SINE Alu 0 149 1 5 1017 523 202 18 27 chr6 56744542 56744654 -92772383 - B1_Mur2 SINE Alu -38 111 1 5 1017 263 330 23 0 chr6 56744575 56744663 -92772374 - B4A SINE B4 -126 166 77 5 1017 36 23 0 0 chr6 56747196 56747239 -92769798 + AT_rich Low_complexity Low_complexity 1 43 0 5 1017 22 0 0 0 chr6 56747390 56747412 -92769625 + GC_rich Low_complexity Low_complexity 1 22 0 5 1017 259 330 9 28 chr6 56748440 56748549 -92768488 + ID_B1 SINE B4 75 181 -43 5 1017 234 204 0 58 chr6 56748870 56748922 -92768115 + L1MD2 LINE L1 6038 6086 -273 5 1017 518 230 55 48 chr6 56748978 56749124 -92767913 + B1_Mur1 SINE Alu 3 149 0 5 1017 342 274 14 49 chr6 56749146 56749288 -92767749 + L1MC4a LINE L1 7655 7791 -91 5 1017 573 83 0 0 chr6 56749329 56749413 -92767624 + (TG)n Simple_repeat Simple_repeat 1 84 0 5 1017 423 240 67 44 chr6 56749428 56749563 -92767474 - RSINE1 SINE B4 -15 150 13 5 1017 348 198 67 44 chr6 56749622 56749697 -92767340 + B3 SINE B2 1 77 -139 5 1017 1494 203 65 21 chr6 56749697 56750065 -92766972 + RLTR18 LTR ERVK 1 377 -135 5 1017 251 120 0 123 chr6 56750065 56750103 -92766934 + B3 SINE B2 158 192 -24 5 1017 4899 131 83 16 chr6 56750103 56750949 -92766088 - RLTR13D6 LTR ERVK 0 902 1 5 1017 251 120 0 123 chr6 56750949 56750967 -92766070 + B3 SINE B2 193 207 -9 5 1017 387 274 118 0 chr6 56751169 56751271 -92765766 + B1F SINE Alu 7 120 -29 5 1017 233 306 28 0 chr6 56751329 56751401 -92765636 + PB1 SINE Alu 29 102 -25 5 1017 312 258 0 106 chr6 56751448 56751552 -92765485 - PB1D10 SINE Alu -15 102 10 5 1017 263 316 13 0 chr6 56751481 56751560 -92765477 - ID_B1 SINE B4 -63 161 82 5 1017 1021 159 62 76 chr6 56751727 56751951 -92765086 + URR1B DNA MER1_type 5 225 0 5 1017 21 0 0 0 chr6 56752154 56752175 -92764862 + AT_rich Low_complexity Low_complexity 1 21 0 5 1017 906 115 83 24 chr6 56752175 56752344 -92764693 - Lx2A1 LINE L1 -4 7004 6826 5 1017 685 267 69 86 chr6 56752798 56753089 -92763948 + B4A SINE B4 1 286 -6 5 1017 496 305 25 43 chr6 56753149 56753310 -92763727 - B3A SINE B2 0 198 41 5 1017 1341 147 83 1 chr6 56753313 56753603 -92763434 - ORR1A4 LTR MaLR -54 340 1 5 1017 255 196 0 0 chr6 56753615 56753666 -92763371 + PB1 SINE Alu 76 126 -1 5 1017 812 261 83 61 chr6 56753762 56754089 -92762948 + L1MB3 LINE L1 5628 5961 -222 5 1017 231 245 0 19 chr6 56754097 56754151 -92762886 + ORR1C1 LTR MaLR 24 76 -303 5 127 1039 95 0 7 chr6 56754163 56754311 -92762726 - B1_Mus2 SINE Alu 0 147 1 5 1018 459 141 0 0 chr6 56754364 56754442 -92762595 + (CCCCCT)n Simple_repeat Simple_repeat 3 80 0 5 1018 979 202 14 5 chr6 56754453 56754662 -92762375 + ORR1C1 LTR MaLR 168 378 0 5 1018 1026 211 40 16 chr6 56754719 56754969 -92762068 + MTE2b LTR MaLR 122 377 -2 5 1018 916 246 50 76 chr6 56754971 56755288 -92761749 + MTE2b-int LTR MaLR 1 309 -1271 5 1018 218 261 116 0 chr6 56755329 56755398 -92761639 + ID4 SINE ID 4 80 -3 5 1018 244 236 27 27 chr6 56755399 56755473 -92761564 + GA-rich Low_complexity Low_complexity 2 75 0 5 1018 760 249 55 25 chr6 56755606 56755808 -92761229 + B3 SINE B2 1 208 -8 5 1018 395 323 42 30 chr6 56756420 56756586 -92760451 + MLT1F LTR MaLR 190 357 -191 5 1018 316 198 135 34 chr6 56756644 56756733 -92760304 + PB1D10 SINE Alu 27 124 -3 5 1018 292 234 15 15 chr6 56756733 56756798 -92760239 + ID4_ SINE ID 2 66 -17 5 1018 717 215 0 8 chr6 56756974 56757105 -92759932 + RSINE1 SINE B4 1 130 -35 5 1018 616 217 132 35 chr6 56757105 56757327 -92759710 + Lx7 LINE L1 5625 5894 -1802 5 1018 551 289 238 6 chr6 56757328 56757669 -92759368 - MTC LTR MaLR 0 421 2 5 1018 1255 75 0 39 chr6 56758057 56758238 -92758799 + L1_Mus1 LINE L1 6394 6567 0 5 1018 273 144 13 64 chr6 56758267 56758348 -92758689 + ORR1C2 LTR MaLR 1 73 -294 5 1018 352 237 142 43 chr6 56758354 56758495 -92758542 + Lx8 LINE L1 6785 6939 -534 5 1018 540 0 0 0 chr6 56759536 56759596 -92757441 + (TTTCC)n Simple_repeat Simple_repeat 3 62 0 5 1018 1094 62 7 40 chr6 56759851 56759986 -92757051 + B1_Mus1 SINE Alu 2 137 -11 5 1018 504 0 0 0 chr6 56759986 56760042 -92756995 + (CTAAA)n Simple_repeat Simple_repeat 1 56 0 5 1018 1094 62 7 40 chr6 56760042 56760057 -92756980 + B1_Mus1 SINE Alu 138 147 -1 5 1018 234 245 86 0 chr6 56760625 56760788 -92756249 + (CTGGGG)n Simple_repeat Simple_repeat 1 177 0 5 1018 459 233 0 0 chr6 56760858 56760944 -92756093 + RMER30 DNA MER1_type 1 86 -116 5 1018 2011 194 34 58 chr6 56760944 56761479 -92755558 - RLTR11A LTR ERVK 0 528 7 5 1018 359 262 55 18 chr6 56761484 56761593 -92755444 - Charlie12 DNA MER1_type -2760 113 1 5 1018 258 182 0 250 chr6 56761764 56761852 -92755185 + ORR1D1 LTR MaLR 1 66 -308 5 1018 819 137 324 24 chr6 56762245 56762492 -92754545 + ORR1D1 LTR MaLR 54 374 0 5 1018 4424 189 29 130 chr6 56762505 56763732 -92753305 + ORR1D1-int LTR MaLR 47 1148 -222 5 1018 1631 246 75 58 chr6 56763838 56764425 -92752612 + Lx9 LINE L1 5864 6460 -1184 5 1018 817 243 119 30 chr6 56764427 56764784 -92752253 - MT2B LTR ERVL -2 599 77 5 1018 784 209 7 33 chr6 56764820 56764973 -92752064 + B1_Mur4 SINE Alu 2 150 0 5 1018 1595 187 17 3 chr6 56765032 56765322 -92751715 + Lx9 LINE L1 6461 6754 -890 5 1018 1734 127 191 3 chr6 56765322 56765631 -92751406 + ORR1B2 LTR MaLR 1 367 0 5 1018 6455 166 72 18 chr6 56765631 56765992 -92751045 + ORR1B2-int LTR MaLR 1 376 -1133 5 1018 1194 89 66 11 chr6 56765992 56766173 -92750864 - B2_Mm2 SINE B2 -3 192 2 5 1018 6455 166 72 18 chr6 56766173 56767179 -92749858 + ORR1B2-int LTR MaLR 377 1442 -67 5 1018 595 115 10 0 chr6 56767178 56767274 -92749763 + ORR1B2 LTR MaLR 269 365 -2 5 1018 3153 190 60 24 chr6 56767274 56768036 -92749001 + Lx9 LINE L1 6838 7641 -3 5 1018 21 0 0 0 chr6 56768161 56768182 -92748855 + AT_rich Low_complexity Low_complexity 1 21 0 5 1018 1620 256 59 30 chr6 56768232 56768691 -92748346 - Lx6 LINE L1 -2 7458 6987 5 1018 272 152 0 0 chr6 56768688 56768734 -92748303 - Lx6 LINE L1 -665 6795 6750 5 1018 2394 122 3 0 chr6 56768734 56769094 -92747943 - RMER19B LTR ERVK -11 891 531 5 1018 575 234 107 61 chr6 56769103 56769299 -92747738 + Lx8 LINE L1 6888 7092 -381 5 1018 22 0 0 0 chr6 56769541 56769563 -92747474 + AT_rich Low_complexity Low_complexity 1 22 0 5 1018 768 250 45 5 chr6 56769693 56769894 -92747143 + B3 SINE B2 4 212 -4 5 1018 841 156 7 7 chr6 56769933 56770075 -92746962 + B1_Mur4 SINE Alu 8 149 -1 5 1018 288 0 0 0 chr6 56770345 56770377 -92746660 + (TAA)n Simple_repeat Simple_repeat 1 32 0 5 1018 280 125 0 0 chr6 56770377 56770417 -92746620 + ID4_ SINE ID 27 66 -17 5 1018 748 177 151 0 chr6 56771302 56771488 -92745549 - ORR1D2 LTR MaLR 0 370 157 5 1018 1123 174 33 0 chr6 56771471 56771683 -92745354 + ORR1C1 LTR MaLR 77 295 -83 5 1018 1002 213 64 89 chr6 56771682 56771996 -92745041 - MTC-int LTR MaLR -952 306 1 5 1018 2216 166 33 3 chr6 56772029 56772421 -92744616 - MTC LTR MaLR -17 404 1 5 1018 464 200 9 0 chr6 56772436 56772541 -92744496 + (TA)n Simple_repeat Simple_repeat 2 107 0 5 1018 1412 212 33 238 chr6 56772599 56773237 -92743800 - RLTR18B LTR ERVK -5 507 1 5 1018 239 161 0 111 chr6 56773237 56773294 -92743743 + MTC-int LTR MaLR 1034 1083 -175 5 1018 1195 36 0 0 chr6 56773316 56773453 -92743584 - B1_Mm SINE Alu -10 137 1 5 1018 654 155 7 60 chr6 56773453 56773511 -92743526 + MTC-int LTR MaLR 1070 1127 -131 5 1018 8636 29 1 0 chr6 56773511 56774488 -92742549 - RLTR13A3 LTR ERVK 0 978 1 5 1018 654 155 7 60 chr6 56774488 56774580 -92742457 + MTC-int LTR MaLR 1128 1212 -46 5 1018 2385 153 37 5 chr6 56774604 56775011 -92742026 + MTC LTR MaLR 1 420 -1 5 1018 1671 166 68 26 chr6 56775011 56775363 -92741674 - MTC LTR MaLR -54 367 1 5 1018 909 271 125 5 chr6 56775376 56775744 -92741293 + RCHARR1 DNA MER1_type 68 479 -495 5 1018 649 253 25 6 chr6 56775786 56775949 -92741088 + Lx8 LINE L1 7113 7278 -195 5 1018 495 45 0 0 chr6 56775951 56776017 -92741020 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1018 387 279 0 0 chr6 56776165 56776251 -92740786 + ID_B1 SINE B4 85 170 -54 5 1018 261 0 0 0 chr6 56776261 56776290 -92740747 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1018 390 57 0 0 chr6 56776290 56776342 -92740695 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1018 1350 212 55 20 chr6 56776349 56776748 -92740289 + RCHARR1 DNA MER1_type 498 910 -64 5 1018 1648 32 0 0 chr6 56776980 56777166 -92739871 + B2_Mm1a SINE B2 1 186 -7 5 1018 8271 131 23 23 chr6 56777166 56778531 -92738506 - Lx3C LINE L1 -8 6968 5604 5 1018 589 252 39 158 chr6 56778585 56778995 -92738042 - RLTR12B LTR ERVK -121 407 47 5 1018 225 208 55 14 chr6 56779042 56779115 -92737922 + CT-rich Low_complexity Low_complexity 6 81 0 5 1018 341 252 30 20 chr6 56779314 56779415 -92737622 - L1M2 LINE L1 -591 5709 5608 5 1018 293 250 92 23 chr6 56779503 56779634 -92737403 - B1F1 SINE Alu -5 144 5 5 1018 413 276 71 26 chr6 56779637 56779828 -92737209 - L1M2 LINE L1 -563 5621 5417 5 1018 1081 197 5 5 chr6 56779839 56780043 -92736994 - B3 SINE B2 -12 204 1 5 1018 244 106 64 0 chr6 56780044 56780091 -92736946 - L1M2 LINE L1 -740 5440 5391 5 1018 433 312 71 19 chr6 56780272 56780540 -92736497 - L1M2 LINE L1 -809 5334 5053 5 1018 689 262 24 0 chr6 56780561 56780725 -92736312 - B3 SINE B2 0 216 49 5 1018 632 225 68 21 chr6 56780841 56781057 -92735980 + L1M2 LINE L1 4809 5041 -845 5 1018 213 39 0 0 chr6 56781511 56781537 -92735500 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1018 34 55 0 0 chr6 56782064 56782119 -92734918 + GC_rich Low_complexity Low_complexity 1 55 0 5 1018 315 0 0 0 chr6 56782857 56782892 -92734145 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1018 308 246 31 0 chr6 56783295 56783360 -92733677 - ID4_ SINE ID -15 68 2 6 1018 554 269 21 0 chr6 56783449 56783590 -92733447 + RSINE1 SINE B4 3 146 -19 6 1018 366 202 28 17 chr6 56783654 56783754 -92733283 - L1_Mur1 LINE L1 -514 5664 5542 6 1018 838 183 0 0 chr6 56783831 56783962 -92733075 + B1_Mur2 SINE Alu 3 133 -16 6 1018 260 243 100 0 chr6 56783966 56784036 -92733001 - L1_Mur1 LINE L1 -733 5441 5365 6 1018 30 27 0 0 chr6 56785099 56785136 -92731901 + AT_rich Low_complexity Low_complexity 1 37 0 6 1018 571 242 25 25 chr6 56785136 56785293 -92731744 - B3A SINE B2 -4 194 38 6 1018 296 260 57 46 chr6 56786041 56786190 -92730847 - MER5A1 DNA MER1_type -4 162 9 6 1018 359 278 205 16 chr6 56786259 56786449 -92730588 - L2a LINE L2 -1 3425 3200 6 1018 3537 134 130 11 chr6 56786932 56787549 -92729488 - RLTR17 LTR ERVK -1 691 2 6 1018 274 284 51 68 chr6 56788878 56788995 -92728042 - PB1D7 SINE Alu -3 117 3 6 1018 458 261 9 18 chr6 56789042 56789141 -92727896 + B3 SINE B2 103 202 -14 6 1018 2886 73 59 13 chr6 56789141 56789530 -92727507 + MTB_Mm LTR MaLR 1 407 0 6 1018 458 261 9 18 chr6 56789530 56789543 -92727494 + B3 SINE B2 203 214 -2 6 1018 22 0 0 0 chr6 56789810 56789832 -92727205 + AT_rich Low_complexity Low_complexity 1 22 0 6 1018 484 227 196 30 chr6 56789832 56790000 -92727037 - B3A SINE B2 0 198 3 6 1018 315 250 104 0 chr6 56790024 56790120 -92726917 - PB1D10 SINE Alu -6 111 6 6 1018 322 211 152 22 chr6 56790371 56790463 -92726574 - PB1D7 SINE Alu -7 113 10 6 1018 720 209 33 0 chr6 56790395 56790548 -92726489 - ID_B1 SINE B4 -65 159 2 6 1018 645 179 74 34 chr6 56791267 56791452 -92725585 - L1M3 LINE L1 -710 5458 5271 6 1018 619 311 55 94 chr6 56791593 56791955 -92725082 - ORR1E LTR MaLR -5 354 7 6 1018 1143 306 128 48 chr6 56791961 56792148 -92724889 - L1M3 LINE L1 -909 5234 5051 6 1018 448 261 18 0 chr6 56792148 56792259 -92724778 - PB1D7 SINE Alu -7 113 1 6 1018 1292 293 84 49 chr6 56792259 56792769 -92724268 - L1M3 LINE L1 -1093 5050 4449 6 1018 564 288 18 30 chr6 56792769 56792934 -92724103 - RSINE1 SINE B4 0 165 3 6 1018 1292 290 72 50 chr6 56792934 56793359 -92723678 - L1M3 LINE L1 -1692 4448 4018 6 1018 228 281 36 12 chr6 56793359 56793442 -92723595 + LTR33 LTR ERVL 431 515 0 6 1018 2874 288 72 25 chr6 56794109 56795249 -92721788 + Lx9 LINE L1 6103 7436 -208 6 1018 354 183 0 0 chr6 56795263 56795334 -92721703 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1018 558 253 253 0 chr6 56795978 56796144 -92720893 + B3 SINE B2 2 209 -7 6 1018 237 65 0 0 chr6 56797018 56797049 -92719988 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1018 540 263 44 0 chr6 56797060 56797197 -92719840 - RSINE1 SINE B4 -19 146 4 6 1018 204 205 37 95 chr6 56797202 56797391 -92719646 + (CTCA)n Simple_repeat Simple_repeat 3 180 0 6 1018 213 310 99 0 chr6 56798451 56798522 -92718515 - ID4_ SINE ID -4 79 2 6 1018 2433 143 72 30 chr6 56798975 56799407 -92717630 - RMER1B Other Other -1 1065 616 6 1018 474 276 128 45 chr6 56800084 56800327 -92716710 - RMER15 LTR ERVL -14 561 299 6 1018 634 246 0 68 chr6 56801547 56801752 -92715285 - B3A SINE B2 0 198 8 6 1018 329 288 88 47 chr6 56801854 56802047 -92714990 - MER3 DNA MER1_type -7 202 2 6 1018 588 40 0 0 chr6 56802288 56802363 -92714674 + (TG)n Simple_repeat Simple_repeat 1 75 0 6 1018 825 260 78 0 chr6 56802394 56802598 -92714439 + ID_B1 SINE B4 3 222 -2 6 1018 430 209 86 0 chr6 56802765 56802870 -92714167 + PB1D10 SINE Alu 1 114 -3 6 1018 995 235 68 80 chr6 56803077 56803442 -92713595 - ORR1D2 LTR MaLR -9 361 1 6 1018 226 266 38 12 chr6 56803452 56803532 -92713505 - ID4 SINE ID 0 83 2 6 1018 2305 197 40 40 chr6 56803677 56804132 -92712905 - Lx5 LINE L1 0 7050 6596 6 1018 332 198 5 0 chr6 56804204 56804275 -92712762 - PB1D10 SINE Alu -44 105 32 6 1018 327 264 138 17 chr6 56804662 56804843 -92712194 - Lx7 LINE L1 -9 7687 7485 6 1018 828 312 11 0 chr6 56804914 56805183 -92711854 - Lx7 LINE L1 -389 7307 7036 6 1018 745 138 72 0 chr6 56805336 56805474 -92711563 + B1_Mur4 SINE Alu 3 150 0 6 1018 396 0 0 0 chr6 56805565 56805609 -92711428 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 6 1018 420 246 73 0 chr6 56805609 56805719 -92711318 - ID_B1 SINE B4 -28 196 79 6 1018 407 253 0 0 chr6 56805723 56805806 -92711231 - MER2B DNA MER2_type -253 83 1 6 1018 26 0 0 0 chr6 56807177 56807203 -92709834 + AT_rich Low_complexity Low_complexity 1 26 0 6 1018 21 0 0 0 chr6 56807311 56807332 -92709705 + AT_rich Low_complexity Low_complexity 1 21 0 6 1018 1155 199 19 0 chr6 56807338 56807544 -92709493 - B3 SINE B2 -6 210 1 6 1018 279 79 0 0 chr6 56807694 56807732 -92709305 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1018 484 257 0 9 chr6 56808234 56808348 -92708689 + PB1 SINE Alu 1 113 -14 6 1018 195 129 0 0 chr6 56808359 56808390 -92708647 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 6 1018 244 273 56 32 chr6 56808489 56808614 -92708423 - L1MC LINE L1 -2058 5824 5697 6 1018 25 0 0 0 chr6 56808682 56808707 -92708330 + AT_rich Low_complexity Low_complexity 1 25 0 6 1018 379 259 0 26 chr6 56808794 56808899 -92708138 + B1F SINE Alu 3 97 -20 6 1018 504 300 114 22 chr6 56809074 56809533 -92707504 - L1_Mur3 LINE L1 -4094 1753 1258 6 1018 270 227 214 10 chr6 56809602 56809700 -92707337 - B3A SINE B2 -72 126 9 6 1018 31 0 0 0 chr6 56809718 56809749 -92707288 + AT_rich Low_complexity Low_complexity 1 31 0 6 1018 1177 201 9 5 chr6 56811069 56811284 -92705753 - B3 SINE B2 0 216 1 6 1018 521 241 0 0 chr6 56811527 56811635 -92705402 + ID_B1 SINE B4 88 195 -29 6 1018 272 48 24 0 chr6 56811642 56811684 -92705353 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 6 1018 254 315 84 95 chr6 56811819 56811998 -92705039 + MLT1D LTR MaLR 18 194 -311 6 1018 314 250 0 0 chr6 56812243 56812303 -92704734 - ID4 SINE ID -22 61 2 6 1018 280 337 11 0 chr6 56812420 56812509 -92704528 + ID_B1 SINE B4 83 172 -52 6 1018 352 299 0 0 chr6 56812431 56812528 -92704509 + PB1D10 SINE Alu 14 110 -7 6 1018 250 214 36 0 chr6 56813096 56813152 -92703885 + B1F2 SINE Alu 1 58 -91 6 1018 1121 186 150 10 chr6 56813227 56813520 -92703517 - ORR1D1 LTR MaLR 0 374 41 6 1018 336 267 11 34 chr6 56813501 56813590 -92703447 + ID_B1 SINE B4 136 222 -2 6 1018 234 294 0 0 chr6 56813610 56813661 -92703376 + polypurine Low_complexity Low_complexity 3 53 0 6 1018 243 278 0 0 chr6 56813669 56813723 -92703314 + ID4_ SINE ID 19 72 -11 6 1018 244 120 20 20 chr6 56813727 56813778 -92703259 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 6 1018 1240 21 0 0 chr6 56813838 56813978 -92703059 - B1_Mus2 SINE Alu -7 140 1 6 1018 369 0 0 0 chr6 56814106 56814147 -92702890 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1018 219 69 0 0 chr6 56814173 56814202 -92702835 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1018 279 259 42 33 chr6 56814788 56814908 -92702129 + (TATATG)n Simple_repeat Simple_repeat 6 126 0 6 1018 339 25 0 0 chr6 56814955 56814995 -92702042 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 6 1018 688 190 73 0 chr6 56815885 56816022 -92701015 - B1_Mur1 SINE Alu 0 149 3 6 1018 269 174 0 27 chr6 56816207 56816274 -92700763 - B1F SINE Alu -7 142 50 6 1018 245 183 94 35 chr6 56816377 56816462 -92700575 - Lx5 LINE L1 -3 7047 6958 6 1018 3473 210 94 38 chr6 56816492 56816795 -92700242 - Lx5 LINE L1 -38 7012 6695 6 1018 1951 147 91 29 chr6 56816795 56817180 -92699857 - RLTR9E LTR ERVK 0 409 1 6 1018 3473 210 94 38 chr6 56817180 56817791 -92699246 - Lx5 LINE L1 -356 6694 6047 6 1018 256 317 0 0 chr6 56817910 56817970 -92699067 + (TTGGGG)n Simple_repeat Simple_repeat 6 65 0 6 1018 249 57 0 36 chr6 56818505 56818560 -92698477 - L1Md_F2 LINE L1 0 6582 6530 6 1018 2330 147 5 47 chr6 56820574 56820746 -92696291 - MTC LTR MaLR -17 404 251 6 1018 1171 252 93 88 chr6 56820746 56821359 -92695678 - RLTR18 LTR ERVK 0 616 1 6 1018 2330 134 2 47 chr6 56821359 56821510 -92695527 - MTC LTR MaLR -171 250 114 6 1018 2477 72 9 12 chr6 56821510 56821848 -92695189 + L1Md_F2 LINE L1 6245 6581 -1 6 1018 2330 134 2 47 chr6 56821848 56821962 -92695075 - MTC LTR MaLR -308 113 1 6 1018 450 241 67 15 chr6 56822898 56823033 -92694004 + ID_B1 SINE B4 79 220 -4 6 1018 25 51 0 0 chr6 56824213 56824252 -92692785 + AT_rich Low_complexity Low_complexity 1 39 0 6 1018 21 36 0 0 chr6 56824317 56824345 -92692692 + AT_rich Low_complexity Low_complexity 1 28 0 6 1018 308 240 27 0 chr6 56824475 56824550 -92692487 + ID4 SINE ID 1 77 -6 6 1018 606 241 0 0 chr6 56824626 56824742 -92692295 - PB1D10 SINE Alu 0 117 2 6 1018 689 253 66 20 chr6 56824843 56825041 -92691996 - B4 SINE B4 -1 291 85 6 1018 333 47 0 0 chr6 56825067 56825110 -92691927 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1018 484 307 21 21 chr6 56825128 56825271 -92691766 - RSINE1 SINE B4 -20 145 3 6 1018 189 307 60 17 chr6 56826235 56826351 -92690686 + L2 LINE L2 1671 1791 -1628 6 1018 290 221 15 0 chr6 56826374 56826442 -92690595 - PB1D10 SINE Alu -9 108 40 6 1018 220 116 70 0 chr6 56826507 56826550 -92690487 + L2 LINE L2 1853 1898 -1521 6 1018 554 228 26 0 chr6 56826605 56826719 -92690318 - PB1D10 SINE Alu 0 117 1 6 1018 231 301 112 26 chr6 56826720 56826836 -92690201 - PB1 SINE Alu 0 127 2 6 1018 268 337 205 24 chr6 56827136 56827473 -92689564 + L2a LINE L2 3002 3399 -27 6 1018 258 32 0 0 chr6 56827487 56827518 -92689519 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 6 1018 448 246 154 46 chr6 56827657 56827832 -92689205 - B3A SINE B2 -2 196 3 6 1018 243 231 15 15 chr6 56830173 56830232 -92686805 + CT-rich Low_complexity Low_complexity 9 67 0 7 1018 3360 51 0 2 chr6 56830232 56830641 -92686396 - L1Md_T LINE L1 0 6582 6175 7 1018 224 30 30 0 chr6 56830665 56830698 -92686339 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 1018 558 109 96 29 chr6 56830699 56830803 -92686234 + RMER1B Other Other 933 1043 -23 7 1018 1353 140 72 0 chr6 56830794 56831016 -92686021 - RMER1A Other Other -157 873 636 7 1018 321 283 94 0 chr6 56831021 56831127 -92685910 - PB1D10 SINE Alu 0 117 2 7 1018 799 237 252 10 chr6 56831575 56831873 -92685164 + ORR1D2 LTR MaLR 1 370 0 7 1018 1296 88 44 0 chr6 56832025 56832207 -92684830 + B2_Mm2 SINE B2 1 190 -5 7 1018 362 281 107 0 chr6 56832239 56832360 -92684677 - ID_B1 SINE B4 -1 223 90 7 1018 443 261 8 42 chr6 56833225 56833345 -92683692 - PB1D10 SINE Alu 0 117 2 7 1018 497 273 45 13 chr6 56833928 56834084 -92682953 - RSINE1 SINE B4 0 165 5 7 1018 283 281 58 50 chr6 56835338 56835458 -92681579 - L1MA4A LINE L1 -371 5932 5812 7 1018 372 202 23 81 chr6 56835621 56835707 -92681330 + ID4_ SINE ID 3 83 0 7 1018 265 329 0 12 chr6 56835845 56835928 -92681109 - B1F2 SINE Alu -62 87 6 7 1018 364 234 101 210 chr6 56836247 56836485 -92680552 - ID_B1 SINE B4 -10 214 3 7 1018 1412 55 26 32 chr6 56837108 56837297 -92679740 - B2_Mm2 SINE B2 -4 191 4 7 1018 405 302 46 38 chr6 56837433 56837564 -92679473 - B1F1 SINE Alu -1 148 17 7 1018 261 198 161 21 chr6 56838772 56838865 -92678172 - PB1D10 SINE Alu -8 109 4 7 1018 475 282 0 58 chr6 56839038 56839177 -92677860 + ID_B1 SINE B4 79 209 -15 7 1018 261 254 0 0 chr6 56839177 56839232 -92677805 - MIR SINE MIR -13 249 195 7 1018 237 247 154 22 chr6 56839251 56839342 -92677695 - PB1D10 SINE Alu -14 103 1 7 1018 379 236 94 94 chr6 56839818 56839842 -92677195 - PB1D10 SINE Alu 0 117 99 7 1018 1291 198 195 14 chr6 56839842 56840196 -92676841 + MTD LTR MaLR 1 418 -1 7 1018 379 236 94 94 chr6 56840196 56840288 -92676749 - PB1D10 SINE Alu -19 98 1 7 1018 694 239 55 25 chr6 56840288 56840369 -92676668 - ID SINE ID -136 88 3 7 1018 555 90 0 0 chr6 56840528 56840606 -92676431 + (TA)n Simple_repeat Simple_repeat 2 79 0 7 1018 283 316 0 48 chr6 56840713 56840796 -92676241 - ID4 SINE ID -3 80 2 7 1018 1685 191 115 5 chr6 56840800 56841173 -92675864 + MTD LTR MaLR 1 414 -5 7 1018 241 239 9 132 chr6 56841648 56841754 -92675283 + MT2B LTR ERVL 172 264 -337 7 1018 712 172 0 30 chr6 56841661 56841793 -92675244 + B1_Mur4 SINE Alu 23 150 0 7 1018 249 236 137 14 chr6 56841846 56841919 -92675118 - B4 SINE B4 -9 283 202 7 1018 320 279 58 46 chr6 56842585 56842758 -92674279 - Lx7 LINE L1 -346 7350 7176 7 1018 287 277 168 11 chr6 56843083 56843178 -92673859 + PB1D10 SINE Alu 7 116 -1 7 1018 580 170 30 15 chr6 56843397 56843516 -92673521 + B1_Mur1 SINE Alu 9 120 0 7 1018 303 303 11 11 chr6 56843529 56843619 -92673418 + PB1 SINE Alu 31 120 -7 7 1018 2160 147 126 0 chr6 56843705 56844079 -92672958 + MTC LTR MaLR 1 421 0 7 1018 575 301 32 54 chr6 56845036 56845222 -92671815 + B4A SINE B4 107 288 -4 7 1018 566 285 23 0 chr6 56845549 56845679 -92671358 + B3A SINE B2 1 133 -65 7 1018 732 168 21 42 chr6 56845870 56845997 -92671040 + B1_Mus1 SINE Alu 10 136 -13 7 1018 225 83 0 0 chr6 56845997 56846033 -92671004 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 1018 730 168 21 42 chr6 56846033 56846048 -92670989 + B1_Mur3 SINE Alu 137 148 -1 7 1018 244 262 49 0 chr6 56846508 56846569 -92670468 + ID4_ SINE ID 9 72 -11 7 1018 522 312 0 0 chr6 56846714 56846839 -92670198 - B1F1 SINE Alu -24 125 1 7 1018 740 291 16 26 chr6 56847047 56847241 -92669796 - ID_B1 SINE B4 -7 217 26 7 1018 398 215 75 0 chr6 56847268 56847361 -92669676 + ID_B1 SINE B4 118 217 -7 7 1018 289 248 24 96 chr6 56847413 56847538 -92669499 + PB1D10 SINE Alu 2 117 0 7 1018 469 270 20 0 chr6 56848107 56848207 -92668830 - PB1D7 SINE Alu -18 102 1 7 1018 539 230 180 49 chr6 56848331 56848393 -92668644 - Lx8 LINE L1 -115 7358 7281 7 1018 405 0 0 0 chr6 56848393 56848438 -92668599 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1018 539 230 180 49 chr6 56848438 56848558 -92668479 - Lx8 LINE L1 -193 7280 7153 7 1018 187 328 78 0 chr6 56848606 56848670 -92668367 + L2b LINE L2 3302 3370 -5 7 1018 691 115 10 0 chr6 56848843 56848947 -92668090 - B1_Mur4 SINE Alu -44 106 2 7 1018 244 272 61 44 chr6 56848982 56849076 -92667961 + ID4 SINE ID 1 99 -53 7 1018 387 252 237 30 chr6 56849093 56849228 -92667809 + B3A SINE B2 1 163 -35 7 1018 281 284 28 56 chr6 56849379 56849487 -92667550 - PB1D10 SINE Alu -11 106 2 7 1018 462 18 0 0 chr6 56849666 56849721 -92667316 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1018 306 308 39 0 chr6 56851265 56851343 -92665694 - ID4_ SINE ID -1 82 2 7 1018 386 296 88 41 chr6 56852247 56852441 -92664596 + L1MB3 LINE L1 5973 6175 -8 7 1018 346 320 72 0 chr6 56852547 56852644 -92664393 + PB1 SINE Alu 4 107 -20 7 1018 259 198 186 58 chr6 56852931 56853017 -92664020 - PB1 SINE Alu -4 123 27 7 1018 547 264 181 25 chr6 56853202 56853439 -92663598 - B4A SINE B4 -18 274 1 7 1018 312 321 42 18 chr6 56853598 56853766 -92663271 + L1MC LINE L1 5559 5730 -2152 7 1018 336 252 35 43 chr6 56853806 56853922 -92663115 + PB1D9 SINE Alu 5 119 -1 7 1018 214 299 52 0 chr6 56853972 56854049 -92662988 + ID4 SINE ID 2 82 -1 7 1018 226 262 128 11 chr6 56854126 56854234 -92662803 + PB1D9 SINE Alu 2 120 0 7 1018 210 196 0 19 chr6 56854357 56854409 -92662628 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 7 1018 251 281 71 24 chr6 56854745 56854829 -92662208 + PB1D10 SINE Alu 30 117 0 7 1018 272 280 30 99 chr6 56855347 56855478 -92661559 + RSINE1 SINE B4 44 165 0 7 1018 702 245 216 16 chr6 56855543 56855759 -92661278 + Lx7 LINE L1 7038 7293 -403 7 1018 387 0 0 0 chr6 56855759 56855802 -92661235 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1018 702 245 216 16 chr6 56855802 56855830 -92661207 + Lx7 LINE L1 7294 7330 -366 7 1018 259 225 151 27 chr6 56856088 56856161 -92660876 + ID4 SINE ID 1 82 -1 7 1018 352 224 5 39 chr6 56856529 56856654 -92660383 + B4 SINE B4 36 189 -103 7 1018 222 286 191 57 chr6 56857187 56857226 -92659811 + ID_B1 SINE B4 16 135 -89 7 1018 258 284 66 33 chr6 56857226 56857317 -92659720 + MT2B2 LTR ERVL 148 241 -343 7 1018 305 216 129 54 chr6 56857259 56857352 -92659685 + PB1D10 SINE Alu 18 117 0 7 1018 222 286 191 57 chr6 56857317 56857328 -92659709 + ID_B1 SINE B4 136 175 -49 7 1018 395 305 30 22 chr6 56857737 56857864 -92659173 - PB1D10 SINE Alu -22 127 1 7 1018 1057 199 91 0 chr6 56858099 56858285 -92658752 + B3 SINE B2 2 204 -12 7 1018 231 242 47 31 chr6 56858359 56858423 -92658614 - PB1 SINE Alu -54 73 9 7 1018 432 292 38 0 chr6 56858823 56858929 -92658108 + PB1D9 SINE Alu 2 111 -9 7 1018 546 16 0 0 chr6 56858932 56858995 -92658042 + (GA)n Simple_repeat Simple_repeat 1 63 0 7 1018 3087 71 275 19 chr6 56859162 56859624 -92657413 - MT2B2 LTR ERVL 0 584 5 7 1018 488 198 0 0 chr6 56859693 56859774 -92657263 - PB1D9 SINE Alu -7 113 33 7 1018 362 274 126 24 chr6 56860226 56860353 -92656684 - B1F SINE Alu 0 149 10 7 1018 339 275 0 0 chr6 56860543 56860623 -92656414 + B1_Mur4 SINE Alu 64 143 -7 7 1018 368 235 36 36 chr6 56860630 56860714 -92656323 + PB1D10 SINE Alu 32 115 -2 7 1018 275 284 0 15 chr6 56860753 56860821 -92656216 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 7 1018 186 167 0 0 chr6 56861025 56861061 -92655976 + CT-rich Low_complexity Low_complexity 5 40 0 7 1018 234 274 167 10 chr6 56861064 56861160 -92655877 - PB1D10 SINE Alu -6 111 1 7 1018 373 241 114 43 chr6 56861160 56861218 -92655819 - ID SINE ID -212 80 5 7 1018 23 33 0 0 chr6 56861332 56861362 -92655675 + AT_rich Low_complexity Low_complexity 1 30 0 7 1018 399 259 65 129 chr6 56861395 56861451 -92655586 + L1M2 LINE L1 5402 5458 -839 7 1018 2439 74 52 0 chr6 56861451 56861760 -92655277 + ORR1A2 LTR MaLR 1 325 -2 7 1018 399 259 65 129 chr6 56861760 56861920 -92655117 + L1M2 LINE L1 5459 5604 -693 7 1018 560 200 0 8 chr6 56861983 56862114 -92654923 + GA-rich Low_complexity Low_complexity 2 131 0 7 1018 1393 244 75 7 chr6 56862298 56862724 -92654313 + L1_Mur3 LINE L1 3924 4378 -1502 7 1018 840 220 63 10 chr6 56862738 56862909 -92654128 + B3A SINE B2 4 175 -18 7 1018 492 48 0 0 chr6 56862909 56862972 -92654065 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1018 268 280 87 39 chr6 56862991 56863095 -92653942 + PB1D10 SINE Alu 1 109 -8 7 1018 306 207 115 69 chr6 56863550 56863680 -92653357 + Tigger12c DNA MER2_type 561 696 -38 7 1018 279 156 0 0 chr6 56863687 56863732 -92653305 + ID2 SINE ID 1 45 -38 7 1018 2023 144 76 25 chr6 56864352 56864501 -92652536 - ORR1D1 LTR MaLR 0 374 229 7 1018 477 0 0 0 chr6 56864501 56864554 -92652483 + (GCATG)n Simple_repeat Simple_repeat 4 56 0 7 1018 2023 144 76 25 chr6 56864554 56864760 -92652277 - ORR1D1 LTR MaLR -146 228 1 7 1018 209 200 0 0 chr6 56865379 56865424 -92651613 + A-rich Low_complexity Low_complexity 3 47 0 7 1018 731 216 186 0 chr6 56865587 56865754 -92651283 - B3 SINE B2 -18 198 1 7 1018 277 314 29 0 chr6 56865759 56865829 -92651208 - ID4_ SINE ID -4 79 8 8 1018 329 311 0 0 chr6 56866026 56866116 -92650921 + PB1D10 SINE Alu 15 104 -13 8 1018 198 0 0 0 chr6 56866189 56866211 -92650826 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 8 1018 345 24 0 0 chr6 56866392 56866434 -92650603 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1018 224 234 46 115 chr6 56866557 56866644 -92650393 + ID4 SINE ID 3 83 0 8 1018 493 221 19 9 chr6 56866716 56866821 -92650216 - RSINE1 SINE B4 -35 130 25 8 1018 260 172 15 121 chr6 56867301 56867367 -92649670 + PB1D9 SINE Alu 2 60 -60 8 1018 452 285 28 35 chr6 56867381 56867523 -92649514 + B4A SINE B4 127 267 -25 8 1018 704 271 67 10 chr6 56868943 56869137 -92647900 - B3 SINE B2 -6 210 6 8 1018 330 315 9 9 chr6 56869160 56869272 -92647765 + PB1D10 SINE Alu 4 115 -2 8 1018 421 189 70 78 chr6 56869563 56869678 -92647359 + PB1D10 SINE Alu 3 116 -1 8 1018 261 0 0 0 chr6 56869962 56869991 -92647046 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1018 391 333 24 8 chr6 56870114 56870238 -92646799 + PB1 SINE Alu 2 127 0 8 1018 939 280 197 2 chr6 56870338 56870867 -92646170 + L1MC3 LINE L1 6880 7511 -274 8 1018 461 212 272 24 chr6 56870983 56871196 -92645841 + L1MC3 LINE L1 7504 7769 -16 8 1018 211 284 137 69 chr6 56871274 56871356 -92645681 + PB1D10 SINE Alu 1 90 -27 8 1018 3550 148 33 14 chr6 56871356 56871930 -92645107 - RMER4B LTR ERVK 0 585 1 8 1018 211 284 137 69 chr6 56871930 56871949 -92645088 + PB1D10 SINE Alu 91 109 -8 8 1018 267 93 0 0 chr6 56873385 56873428 -92643609 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 8 1018 247 296 19 93 chr6 56874756 56874864 -92642173 + B1F SINE Alu 1 100 -17 8 1018 242 51 51 0 chr6 56875129 56875168 -92641869 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 8 1018 1354 210 100 15 chr6 56875222 56875561 -92641476 - ORR1D2 LTR MaLR 0 370 3 8 1018 391 298 0 0 chr6 56875582 56875686 -92641351 - MER34A LTR ERV1 -467 104 1 8 1018 6348 101 98 0 chr6 56875825 56876833 -92640204 - Lx3C LINE L1 -306 6670 5545 8 1018 1415 305 68 47 chr6 56876828 56877737 -92639300 - L1M2 LINE L1 -2817 3326 2390 8 1018 1465 210 107 38 chr6 56877737 56878083 -92638954 + ORR1D2 LTR MaLR 1 370 0 8 1018 2128 181 27 11 chr6 56878088 56878456 -92638581 + ORR1D1 LTR MaLR 1 374 0 8 1018 1415 305 68 47 chr6 56878456 56878637 -92638400 - L1M2 LINE L1 -3754 2389 2208 8 1018 1358 105 30 15 chr6 56878705 56878908 -92638129 + RMER17C-int LTR ERVK 1994 2199 -1039 8 1018 243 0 0 0 chr6 56878908 56878935 -92638102 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 8 1018 3457 100 19 23 chr6 56878937 56879418 -92637619 - Lx3A LINE L1 -16 6965 6487 8 1018 5947 77 186 68 chr6 56879418 56880548 -92636489 + Lx3_Mus LINE L1 4694 5963 -1046 8 1018 2589 123 107 141 chr6 56880550 56880940 -92636097 + RMER17C-int LTR ERVK 2190 2592 -646 8 1018 246 244 0 0 chr6 56880940 56880985 -92636052 - LSU-rRNA_Hsa rRNA rRNA -789 4246 4202 8 1018 2589 123 107 141 chr6 56880985 56881212 -92635825 + RMER17C-int LTR ERVK 2593 2829 -409 8 1018 441 0 0 0 chr6 56881216 56881265 -92635772 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1018 1714 110 4 0 chr6 56881266 56881502 -92635535 + RMER17C-int LTR ERVK 3002 3238 0 8 1018 870 196 4 52 chr6 56881504 56881752 -92635285 + RMER17C LTR ERVK 3 238 -172 8 1018 249 195 36 24 chr6 56881782 56881866 -92635171 + (CA)n Simple_repeat Simple_repeat 1 85 0 8 1018 1502 14 0 9 chr6 56882846 56883065 -92633972 + (TTC)n Simple_repeat Simple_repeat 1 217 0 8 1018 273 119 0 0 chr6 56883065 56883107 -92633930 + (TCC)n Simple_repeat Simple_repeat 1 42 0 8 1018 1187 97 6 0 chr6 56883107 56883283 -92633754 + (TTC)n Simple_repeat Simple_repeat 3 179 0 8 1018 840 192 36 6 chr6 56883416 56883584 -92633453 + RMER17C LTR ERVK 238 410 0 8 1018 1447 287 20 44 chr6 56883589 56884088 -92632949 - Lx8 LINE L1 -145 7328 6842 8 1018 462 308 80 33 chr6 56884088 56884239 -92632798 + RSINE1 SINE B4 2 159 -6 8 1018 499 219 92 0 chr6 56884284 56884403 -92632634 - ORR1D2 LTR MaLR -240 130 1 8 1018 495 307 17 73 chr6 56884403 56884635 -92632402 - Lx8 LINE L1 -862 6611 6393 8 1018 1600 173 68 21 chr6 56884634 56885018 -92632019 - L1_Mur3 LINE L1 -4071 1809 1408 8 1018 582 114 0 0 chr6 56885018 56885106 -92631931 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 8 1019 432 0 0 0 chr6 56885808 56885856 -92631181 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1019 22 0 0 0 chr6 56886152 56886174 -92630863 + AT_rich Low_complexity Low_complexity 1 22 0 8 1019 414 0 0 0 chr6 56886438 56886484 -92630553 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1019 817 289 46 3 chr6 56886537 56886822 -92630215 - L1MA4 LINE L1 -400 5900 5604 8 1019 342 248 7 157 chr6 56886828 56886981 -92630056 + L1VL1 LINE L1 228 357 -6065 8 1019 298 73 0 0 chr6 56887024 56887065 -92629972 + U2 snRNA snRNA 1 41 -147 8 1019 512 225 46 38 chr6 56887071 56887274 -92629763 + L1Md_F LINE L1 308 706 -5813 8 1019 2545 125 21 94 chr6 56887246 56888199 -92628838 + L1Md_F LINE L1 628 1524 -2293 8 1019 14466 94 31 30 chr6 56888169 56889437 -92627600 + L1_Mus2 LINE L1 3597 4905 -1661 8 1019 243 169 34 135 chr6 56889437 56889526 -92627511 - RMER20A LTR ERVK -268 248 169 8 1019 14466 94 31 30 chr6 56889526 56891015 -92626022 + L1_Mus2 LINE L1 4906 6444 -122 8 1019 208 0 0 59 chr6 56891078 56891112 -92625925 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 8 1019 222 105 0 0 chr6 56891116 56891154 -92625883 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 1019 580 65 11 11 chr6 56891607 56891700 -92625337 + L1_Mus2 LINE L1 6544 6636 -18 8 1019 2124 225 187 35 chr6 56891702 56892626 -92624411 - L1_Rod LINE L1 -2531 3316 2252 8 1019 6830 156 30 7 chr6 56892624 56893840 -92623197 + Lx4B LINE L1 4487 5740 -1318 8 1019 4068 203 62 59 chr6 56894514 56895749 -92621288 - L1_Rod LINE L1 -3144 2703 1466 8 1019 236 214 0 23 chr6 56895759 56895802 -92621235 - ID4_ SINE ID -41 42 1 8 1019 7085 77 8 1 chr6 56895860 56896814 -92620223 - L1_Mus3 LINE L1 -8 6630 5670 8 1019 306 0 0 0 chr6 56898138 56898172 -92618865 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 8 1019 4736 117 1 1 chr6 56898172 56898868 -92618169 - L1_Mm LINE L1 -206 5677 4982 8 1019 227 231 24 82 chr6 56899841 56899926 -92617111 - MLT1E1A LTR MaLR 0 680 601 8 1019 663 116 0 0 chr6 56900509 56900621 -92616416 + (CA)n Simple_repeat Simple_repeat 1 112 0 8 1019 287 235 46 69 chr6 56900724 56900811 -92616226 + B1F1 SINE Alu 4 88 -61 8 1019 312 111 0 0 chr6 56900827 56900881 -92616156 + (TCTG)n Simple_repeat Simple_repeat 3 56 0 8 1019 200 200 57 57 chr6 56901006 56901059 -92615978 + MER5A DNA MER1_type 21 73 -116 8 1019 321 157 33 22 chr6 56901302 56901393 -92615644 + CT-rich Low_complexity Low_complexity 3 94 0 8 1019 333 0 0 0 chr6 56901430 56901467 -92615570 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1019 195 65 43 21 chr6 56902327 56902374 -92614663 + (TTATA)n Simple_repeat Simple_repeat 5 52 0 8 1019 25 0 0 0 chr6 56902425 56902450 -92614587 + AT_rich Low_complexity Low_complexity 1 25 0 8 1019 8259 30 0 0 chr6 56902498 56903524 -92613513 - L1Md_T LINE L1 0 6582 5615 8 1019 226 170 31 21 chr6 56903596 56903692 -92613345 + (TA)n Simple_repeat Simple_repeat 2 98 0 8 1019 399 239 53 32 chr6 56903767 56903862 -92613175 - B2_Mm2 SINE B2 -93 102 6 8 1019 276 253 41 58 chr6 56904499 56904671 -92612366 + Lx9 LINE L1 5926 6094 -1550 8 1019 8537 10 2 0 chr6 56905112 56906074 -92610963 - L1Md_A LINE L1 0 6582 5619 8 1019 365 300 64 0 chr6 56907451 56907561 -92609476 - B3 SINE B2 -11 205 89 8 1019 26 50 0 0 chr6 56907889 56907929 -92609108 + AT_rich Low_complexity Low_complexity 1 40 0 8 1019 23 92 0 0 chr6 56908060 56908125 -92608912 + AT_rich Low_complexity Low_complexity 1 65 0 8 1019 408 40 0 0 chr6 56908130 56908180 -92608857 + (TATG)n Simple_repeat Simple_repeat 1 50 0 8 1019 502 308 119 46 chr6 56908193 56908267 -92608770 - B4 SINE B4 -2 290 219 8 1019 2849 119 15 15 chr6 56908267 56908278 -92608759 - Lx LINE L1 -2 6652 6643 8 1019 180 0 0 0 chr6 56908278 56908298 -92608739 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 8 1019 2849 119 15 15 chr6 56908298 56908754 -92608283 - Lx LINE L1 -12 6642 6185 8 1019 502 308 119 46 chr6 56908754 56908873 -92608164 - B4 SINE B4 -74 218 83 8 1019 389 153 0 14 chr6 56908889 56908962 -92608075 - Lx7 LINE L1 0 7696 7625 8 1019 290 243 14 0 chr6 56908967 56909037 -92608000 - Lx7 LINE L1 -1644 6052 5982 8 1019 1430 231 144 19 chr6 56909523 56910088 -92606949 - Lx7 LINE L1 -1710 5986 5351 8 1019 36537 68 1 2 chr6 56910091 56916269 -92600768 - L1Md_F2 LINE L1 0 6582 450 8 1019 7985 155 16 24 chr6 56916289 56916436 -92600601 - L1_Mm LINE L1 -746 5137 4983 8 1019 432 0 0 0 chr6 56916436 56916484 -92600553 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1019 7985 155 16 24 chr6 56916484 56917846 -92599191 - L1_Mm LINE L1 -901 4982 3641 8 1019 21 0 0 0 chr6 56917924 56917945 -92599092 + AT_rich Low_complexity Low_complexity 1 21 0 8 1019 3162 122 22 2 chr6 56917949 56918450 -92598587 + L1_Mur1 LINE L1 4543 5053 -833 8 1019 5703 137 23 19 chr6 56918452 56919423 -92597614 + Lx3A LINE L1 6006 6980 -1 8 1019 374 122 27 0 chr6 56919498 56919572 -92597465 + (TTTTC)n Simple_repeat Simple_repeat 5 80 0 8 1019 635 163 63 32 chr6 56919577 56919735 -92597302 - L1_Rod LINE L1 -4219 1628 1466 8 1019 423 0 0 0 chr6 56921313 56921360 -92595677 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1019 228 270 76 45 chr6 56921466 56921532 -92595505 + B1_Mus1 SINE Alu 10 77 -71 8 1019 1049 203 5 5 chr6 56921532 56921725 -92595312 - RMER19C LTR ERVK 0 611 419 8 1019 236 171 0 47 chr6 56921702 56921745 -92595292 - RMER19C LTR ERVK -238 664 624 8 1019 207 114 0 0 chr6 56921797 56921832 -92595205 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 8 1019 250 250 17 0 chr6 56922263 56922323 -92594714 + CT-rich Low_complexity Low_complexity 2 62 0 8 1019 459 0 0 0 chr6 56922353 56922404 -92594633 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1019 513 0 0 0 chr6 56922404 56922460 -92594577 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1019 29 0 0 0 chr6 56922626 56922655 -92594382 + AT_rich Low_complexity Low_complexity 1 29 0 8 1019 579 88 0 0 chr6 56923186 56923277 -92593760 + (TCTCTG)n Simple_repeat Simple_repeat 6 96 0 8 1019 32 43 0 0 chr6 56923748 56923794 -92593243 + AT_rich Low_complexity Low_complexity 1 46 0 8 1019 259 221 138 46 chr6 56923865 56923889 -92593148 - B3 SINE B2 0 216 194 8 1019 261 0 0 0 chr6 56923889 56923918 -92593119 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1019 328 280 93 26 chr6 56923918 56924096 -92592941 - B3A SINE B2 -23 193 2 8 1019 7993 136 31 12 chr6 56924489 56925925 -92591112 - L1_Mm LINE L1 -1609 4274 2812 9 1019 269 109 0 21 chr6 56925925 56925972 -92591065 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 9 1019 33271 102 22 9 chr6 56925977 56932284 -92584753 - L1_Mus1 LINE L1 0 6567 207 9 1019 477 193 0 0 chr6 56932648 56932783 -92584254 + CT-rich Low_complexity Low_complexity 2 136 0 9 1019 279 0 0 0 chr6 56932783 56932814 -92584223 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1019 30 77 0 0 chr6 56933225 56933290 -92583747 + AT_rich Low_complexity Low_complexity 1 65 0 9 1019 423 335 29 29 chr6 56933448 56933623 -92583414 - B3 SINE B2 -33 183 9 9 1019 303 265 37 58 chr6 56934256 56934475 -92582562 + Lx9 LINE L1 5927 6235 -1409 9 1019 413 268 55 31 chr6 56936294 56936421 -92580616 - B3 SINE B2 -11 205 76 9 1019 2179 109 6 0 chr6 56936701 56937021 -92580016 - L1_Mus3 LINE L1 0 6638 6317 9 1019 350 270 9 26 chr6 56937507 56937621 -92579416 - Lx6 LINE L1 -7 7453 7342 9 1019 310 197 15 0 chr6 56937591 56937657 -92579380 - Lx7 LINE L1 -1645 6051 5985 9 1019 226 254 15 45 chr6 56937688 56937754 -92579283 - RLTR1C LTR ERV1 -51 452 389 9 1019 920 254 55 11 chr6 56937878 56938149 -92578888 - Lx7 LINE L1 -1710 5986 5704 9 1019 2189 94 13 3 chr6 56938149 56938459 -92578578 + RMER17B LTR ERVK 1 313 -645 9 1019 180 0 0 0 chr6 56938480 56938500 -92578537 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 9 1019 1742 76 111 4 chr6 56938516 56938768 -92578269 - L1_Mus1 LINE L1 0 6567 6289 9 1019 4675 55 7 0 chr6 56938774 56939357 -92577680 + LTRIS_Mus LTR ERV1 1 587 0 9 1019 3219 155 50 3 chr6 56939357 56939921 -92577116 - L1Md_F LINE L1 -5672 847 258 9 1019 241 217 83 12 chr6 56940069 56940153 -92576884 - L1PB4 LINE L1 -189 5967 5878 9 1019 497 310 102 24 chr6 56940229 56940724 -92576313 - L1M2 LINE L1 -386 5803 5264 9 1019 1171 336 11 9 chr6 56940707 56941317 -92575720 - Lx7 LINE L1 -565 5315 4696 9 1019 22 56 0 0 chr6 56941485 56941521 -92575516 + AT_rich Low_complexity Low_complexity 1 36 0 9 1019 575 288 89 9 chr6 56942084 56942298 -92574739 - MERVL_2A-int LTR ERVL -1790 3971 3741 9 1019 1980 165 3 6 chr6 56942298 56942627 -92574410 + ORR1A4 LTR MaLR 1 328 -1 9 1019 3497 299 35 35 chr6 56942640 56943971 -92573066 - MERVL_2A-int LTR ERVL -2028 3733 2403 9 1019 216 0 0 0 chr6 56943971 56943995 -92573042 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1019 1123 63 7 0 chr6 56943997 56944139 -92572898 - B1_Mus2 SINE Alu -4 143 1 9 1019 233 29 0 29 chr6 56944142 56944177 -92572860 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1019 8361 30 6 0 chr6 56944180 56945841 -92571196 - L1Md_T LINE L1 0 6582 4912 9 1019 2333 212 78 81 chr6 56945831 56946752 -92570285 - L1_Rod LINE L1 -3529 2357 1463 9 1019 447 19 0 0 chr6 56949684 56949736 -92567301 + (TC)n Simple_repeat Simple_repeat 1 52 0 9 1019 23 0 0 0 chr6 56950210 56950233 -92566804 + AT_rich Low_complexity Low_complexity 1 23 0 9 1019 447 35 0 0 chr6 56950344 56950401 -92566636 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 9 1019 479 290 75 30 chr6 56950401 56950589 -92566448 - B3 SINE B2 -13 203 3 9 1019 236 257 25 74 chr6 56951363 56951485 -92565552 + Lx9 LINE L1 6120 6235 -1409 9 1019 283 297 70 26 chr6 56953293 56953407 -92563630 - B3 SINE B2 -2 214 96 9 1019 2108 106 6 30 chr6 56953711 56954041 -92562996 - L1_Mus3 LINE L1 0 6638 6317 9 1019 222 400 0 0 chr6 56954414 56954443 -92562594 - PB1D7 SINE Alu -21 99 5 9 1019 270 318 0 0 chr6 56954443 56954509 -92562528 - B4 SINE B4 -137 155 90 9 1019 245 151 0 36 chr6 56954531 56954586 -92562451 - Lx7 LINE L1 0 7696 7644 9 1019 5485 146 22 8 chr6 56954640 56956061 -92560976 + L1_Mus2 LINE L1 670 2113 -3770 9 1019 6539 103 2 2 chr6 56956066 56957312 -92559725 + L1_Mus2 LINE L1 5243 6487 -79 9 1019 741 256 20 105 chr6 56957303 56957609 -92559428 - L1VL1 LINE L1 -6099 323 44 9 1019 3578 305 42 51 chr6 56958328 56958547 -92558490 - MERVL_2A-int LTR ERVL -1790 3971 3746 9 1019 1962 168 3 0 chr6 56958547 56958874 -92558163 + ORR1A4 LTR MaLR 1 328 -1 9 1019 3578 305 42 51 chr6 56958874 56960232 -92556805 - MERVL_2A-int LTR ERVL -2016 3745 2408 9 1019 1607 202 64 0 chr6 56960232 56960637 -92556400 - L1_Rod LINE L1 -3525 2358 1952 9 1019 38396 50 8 10 chr6 56960665 56967201 -92549836 - L1Md_F2 LINE L1 -108 6889 416 9 1019 414 0 0 0 chr6 56967231 56967277 -92549760 + (TA)n Simple_repeat Simple_repeat 1 46 0 9 1019 35248 69 3 7 chr6 56967277 56973203 -92543834 - L1Md_F3 LINE L1 -22 6562 468 9 1019 3591 83 30 16 chr6 56973212 56973714 -92543323 - L1Md_F2 LINE L1 -19 6563 6055 9 1019 615 138 0 9 chr6 56973925 56974035 -92543002 - Lx2 LINE L1 0 6997 6889 9 1019 560 155 0 0 chr6 56974039 56974136 -92542901 + L1_Mur1 LINE L1 3662 3758 -2128 9 1019 280 291 139 0 chr6 56974205 56974284 -92542753 + B3 SINE B2 93 182 -34 9 1019 23 0 0 0 chr6 56974320 56974343 -92542694 + AT_rich Low_complexity Low_complexity 1 23 0 9 1019 6317 17 0 0 chr6 56975454 56976169 -92540868 + L1Md_T LINE L1 5868 6582 0 9 1019 3040 137 50 2 chr6 56976174 56976717 -92540320 + L1_Mus2 LINE L1 1545 2113 -3770 9 1019 6619 87 7 2 chr6 56976722 56977963 -92539074 + L1_Mus2 LINE L1 5243 6487 -79 9 1019 582 266 15 154 chr6 56977955 56978279 -92538758 - L1VL1 LINE L1 -6100 322 44 9 1019 281 320 30 0 chr6 56979007 56979107 -92537930 - MERVL_2A-int LTR ERVL -1790 3971 3869 9 1019 3131 293 30 25 chr6 56979151 56979184 -92537853 - MERVL_2A-int LTR ERVL -1988 3773 3741 9 1019 1958 149 16 0 chr6 56979184 56979507 -92537530 + ORR1A4 LTR MaLR 1 328 -1 9 1019 3131 293 30 25 chr6 56979507 56980523 -92536514 - MERVL_2A-int LTR ERVL -2021 3740 2719 9 1019 2220 219 75 83 chr6 56980839 56981757 -92535280 - L1_Rod LINE L1 -3495 2352 1470 9 1019 1538 71 9 19 chr6 56983424 56983640 -92533397 + L1_Mus1 LINE L1 6348 6561 -6 9 1019 351 0 0 0 chr6 56983714 56983753 -92533284 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1019 224 372 27 81 chr6 56983851 56983962 -92533075 + PB1D10 SINE Alu 1 105 -12 9 1019 462 157 0 0 chr6 56983962 56984045 -92532992 + (TCTG)n Simple_repeat Simple_repeat 4 86 0 9 1019 387 0 0 0 chr6 56984242 56984285 -92532752 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1019 695 255 16 45 chr6 56984777 56985023 -92532014 + Lx9 LINE L1 5871 6109 -1535 9 1019 558 0 0 0 chr6 56985674 56985736 -92531301 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 9 1019 261 330 62 0 chr6 56986912 56987009 -92530028 - B3 SINE B2 -21 195 93 9 1019 537 165 0 1 chr6 56987080 56987180 -92529857 - L1_Mur1 LINE L1 -2128 3758 3653 9 1019 539 174 0 18 chr6 56987180 56987291 -92529746 + Lx LINE L1 6540 6648 -6 9 1019 264 250 28 0 chr6 56987780 56987852 -92529185 + (TATG)n Simple_repeat Simple_repeat 3 76 0 9 1019 2022 140 24 80 chr6 56987932 56988343 -92528694 - RLTR9C LTR ERVK 0 393 6 9 1019 251 333 0 0 chr6 56988370 56988436 -92528601 - B4A SINE B4 -137 155 90 9 1019 4107 266 51 37 chr6 56988455 56989794 -92527243 - Lx7 LINE L1 0 7696 6340 9 1019 971 108 0 0 chr6 56989796 56989926 -92527111 - L1_Mm LINE L1 -211 5672 5543 9 1019 1733 65 9 0 chr6 56989926 56990156 -92526881 + L1_Mus1 LINE L1 6335 6566 -1 9 1019 324 0 0 0 chr6 56990161 56990197 -92526840 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 9 1019 832 282 45 31 chr6 56990207 56990566 -92526471 - Lx7 LINE L1 -1360 6336 5973 9 1019 549 243 20 136 chr6 56990572 56990977 -92526060 - L1_Rod LINE L1 -4024 1823 1466 9 1019 251 125 0 0 chr6 56990989 56991029 -92526008 - ID SINE ID -183 41 2 9 1019 756 119 0 0 chr6 56992131 56992249 -92524788 + (CA)n Simple_repeat Simple_repeat 1 118 0 9 1019 2049 94 33 3 chr6 56992888 56993187 -92523850 + Lx3_Mus LINE L1 6341 6648 -361 9 1019 2186 146 11 8 chr6 56993220 56993592 -92523445 - Lx3_Mus LINE L1 -8 7001 6629 9 1019 7718 153 23 20 chr6 56993594 56993640 -92523397 - L1_Mur1 LINE L1 -3100 2786 2747 9 1019 3394 82 4 10 chr6 56993640 56994120 -92522917 - L1_Mus2 LINE L1 0 6566 6090 9 1019 7718 153 23 20 chr6 56994120 56994161 -92522876 - L1_Mur1 LINE L1 -3140 2746 2700 9 1019 599 0 78 78 chr6 56994161 56994341 -92522696 + (TA)n Simple_repeat Simple_repeat 1 180 0 9 1019 7718 153 23 20 chr6 56994341 56995031 -92522006 - L1_Mur1 LINE L1 -3187 2699 2000 9 1019 954 0 0 0 chr6 56995031 56995137 -92521900 + (TTC)n Simple_repeat Simple_repeat 2 107 0 9 1019 7718 153 23 20 chr6 56995137 56995828 -92521209 - L1_Mur1 LINE L1 -3887 1999 1312 9 1019 22352 105 6 6 chr6 56995841 57000000 -92517037 - L1_Mus1 LINE L1 -1 6566 2406 9 1019 2318 129 2 0 chr6 57000001 57000404 -92516633 - L1Md_Gf LINE L1 -3479 2407 2004 1 1019 12930 123 12 40 chr6 57000383 57003206 -92513831 - L1Md_Gf LINE L1 -2949 2937 220 1 1019 3953 125 99 17 chr6 57003214 57004192 -92512845 - L1Md_F LINE L1 -3892 1991 949 2 1019 803 160 38 0 chr6 57004192 57004323 -92512714 + B1_Mus2 SINE Alu 3 138 -9 3 1019 3182 157 115 66 chr6 57004323 57004849 -92512188 - L1Md_F LINE L1 -5668 948 380 2 1019 3375 203 29 13 chr6 57004870 57005776 -92511261 - L1_Mur1 LINE L1 -5658 1324 17 4 1019 876 211 4 4 chr6 57005786 57006014 -92511023 - L1_Mur3 LINE L1 -1411 4469 4242 5 1019 610 236 8 0 chr6 57006014 57006137 -92510900 + ETnERV2-int LTR ERVK 7073 7196 -210 6 1019 1761 213 51 43 chr6 57006534 57006755 -92510282 - L1_Mur3 LINE L1 -1631 4249 4010 5 1019 180 0 0 0 chr6 57006755 57006775 -92510262 + (TC)n Simple_repeat Simple_repeat 1 20 0 7 1019 1761 213 51 43 chr6 57006775 57007084 -92509953 - L1_Mur3 LINE L1 -1871 4009 3716 5 1019 4366 92 8 105 chr6 57007083 57008247 -92508790 + L1Md_T LINE L1 4628 5586 -297 8 1019 8218 47 0 0 chr6 57008247 57009243 -92507794 + L1Md_T LINE L1 5587 6582 0 8 1019 5753 172 22 69 chr6 57009765 57011164 -92505873 + RMER17C-int LTR ERVK 1098 2524 -714 9 1019 250 241 0 18 chr6 57011166 57011221 -92505816 - LSU-rRNA_Hsa rRNA rRNA -780 4255 4202 1 1019 3176 175 41 13 chr6 57011221 57011856 -92505181 + RMER17C-int LTR ERVK 2586 3238 0 9 1019 478 269 50 29 chr6 57011856 57012097 -92504940 + RMER17C LTR ERVK 1 246 -164 9 1019 677 265 52 52 chr6 57012098 57012424 -92504613 + RMER17C LTR ERVK 85 410 0 1 1019 993 196 15 5 chr6 57012435 57012459 -92504578 + Lx4B LINE L1 6424 6447 -611 1 1019 2889 15 45 0 chr6 57012459 57012790 -92504247 + ORR1A0 LTR MaLR 1 346 0 1 1019 993 196 15 5 chr6 57012790 57012960 -92504077 + Lx4B LINE L1 6448 6620 -438 1 1019 1500 313 38 16 chr6 57013211 57014116 -92502921 - Lx6 LINE L1 -27 7433 6228 1 1019 495 221 40 126 chr6 57014133 57014459 -92502578 - L1_Rod LINE L1 -3872 1975 1678 1 1019 24 0 0 0 chr6 57014459 57014483 -92502554 + AT_rich Low_complexity Low_complexity 1 24 0 1 1019 3051 146 23 26 chr6 57014484 57015012 -92502025 - Lx3A LINE L1 -8 6973 6448 1 1019 4995 116 66 18 chr6 57015017 57015939 -92501098 - L1_Mur1 LINE L1 -668 5218 4253 1 1019 1017 116 0 0 chr6 57015993 57016140 -92500897 - B1_Mm SINE Alu 0 147 1 1 127 524 224 72 11 chr6 57016152 57016333 -92500704 - L1_Rod LINE L1 -4190 1657 1466 1 1020 34 65 0 0 chr6 57018946 57019008 -92498029 + AT_rich Low_complexity Low_complexity 1 62 0 2 1020 216 0 0 0 chr6 57019073 57019097 -92497940 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2 1020 230 254 18 0 chr6 57019449 57019504 -92497533 + (TATG)n Simple_repeat Simple_repeat 1 56 0 2 1020 482 313 27 36 chr6 57019831 57020053 -92496984 + Lx9 LINE L1 5878 6097 -1547 2 1020 21 57 0 0 chr6 57021837 57021872 -92495165 + AT_rich Low_complexity Low_complexity 1 35 0 2 1020 368 304 69 0 chr6 57021872 57021974 -92495063 - B3 SINE B2 0 216 108 2 1020 3165 259 57 14 chr6 57022776 57023526 -92493511 - Lx7 LINE L1 -561 7135 6344 2 1020 4022 152 55 14 chr6 57023526 57024303 -92492734 + RMER17D2 LTR ERVK 1 809 0 2 1020 3165 259 57 14 chr6 57024303 57024484 -92492553 - Lx7 LINE L1 -1353 6343 6164 2 1020 3120 38 0 3 chr6 57024488 57024854 -92492183 - RLTR10B2 LTR ERVK 0 365 1 2 1020 3830 114 29 1 chr6 57024854 57025524 -92491513 - IAPEY3-int LTR ERVK 0 7680 6965 2 1020 1466 87 98 17 chr6 57025524 57025759 -92491278 - IAP-d-int LTR ERVK -1287 5255 5002 2 1020 431 296 34 29 chr6 57025771 57026042 -92490995 - IAPEY3-int LTR ERVK -5481 1061 822 2 1020 2815 35 0 0 chr6 57026181 57026522 -92490515 - RLTR10-int LTR ERVK -995 992 652 3 1020 310 91 0 0 chr6 57026526 57026570 -92490467 - RLTR10-int LTR ERVK -6406 136 93 3 1020 384 116 31 81 chr6 57026570 57026730 -92490307 + CT-rich Low_complexity Low_complexity 3 154 0 3 1020 180 329 94 35 chr6 57026734 57026819 -92490218 - L4 LINE RTE -842 1187 1098 3 1020 246 214 0 0 chr6 57026819 57026861 -92490176 - RLTR27 LTR ERVK -34 275 234 3 1020 699 87 10 0 chr6 57026863 57026966 -92490071 - RLTR10-int LTR ERVK -7477 104 1 3 1020 2864 52 0 67 chr6 57026966 57027357 -92489680 - RLTR10B2 LTR ERVK 0 365 1 3 1020 230 287 103 23 chr6 57027363 57027538 -92489499 - Lx7 LINE L1 -1537 6159 5971 2 1020 28728 97 9 11 chr6 57027591 57029986 -92487051 - L1_Mus1 LINE L1 0 6567 4195 3 1020 429 95 0 0 chr6 57029986 57030049 -92486988 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1020 28728 124 19 15 chr6 57030049 57033853 -92483184 - L1_Mus1 LINE L1 -1689 4194 380 3 1020 371 243 99 16 chr6 57033884 57034076 -92482961 - L1_Rod LINE L1 -4137 1710 1503 3 1020 242 184 0 0 chr6 57034106 57034144 -92482893 - ID SINE ID -185 39 2 3 1020 260 259 0 0 chr6 57035255 57035309 -92481728 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1020 1722 118 33 30 chr6 57035957 57036262 -92480775 + Lx3_Mus LINE L1 6343 6648 -361 3 1020 2012 134 63 11 chr6 57036280 57036642 -92480395 - Lx3_Mus LINE L1 -3 7006 6626 4 1020 232 163 0 0 chr6 57036630 57036673 -92480364 - MusHAL1 LINE L1 -1122 1590 1548 4 1020 3590 23 102 0 chr6 57036673 57037104 -92479933 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1020 49671 41 17 22 chr6 57037106 57043612 -92473425 - IAPEz-int LTR ERVK -2 6479 9 4 1020 3172 16 84 0 chr6 57043613 57043992 -92473045 - IAPLTR2a LTR ERVK 0 411 1 4 1020 7731 138 14 43 chr6 57043993 57044015 -92473022 - L1_Mur1 LINE L1 -3127 2759 2745 4 1020 2779 101 58 38 chr6 57044015 57044271 -92472766 - L1_Mus2 LINE L1 0 6566 6298 4 1020 1396 75 0 36 chr6 57044271 57044465 -92472572 - B2_Mm2 SINE B2 -8 187 1 4 1020 2779 101 58 38 chr6 57044465 57044660 -92472377 - L1_Mus2 LINE L1 -269 6297 6106 4 1020 7731 138 14 43 chr6 57044660 57044740 -92472297 - L1_Mur1 LINE L1 -3142 2744 2693 4 1020 297 0 0 0 chr6 57044740 57044773 -92472264 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1020 7731 138 14 43 chr6 57044773 57044992 -92472045 - L1_Mur1 LINE L1 -3194 2692 2469 4 1020 2316 51 0 13 chr6 57044992 57045291 -92471746 + L1Md_F2 LINE L1 6276 6570 -12 4 1020 7731 138 14 42 chr6 57045291 57046663 -92470374 - L1_Mur1 LINE L1 -3418 2468 1112 4 1020 765 170 0 30 chr6 57046663 57046827 -92470210 - L1Md_F2 LINE L1 -5 6577 6419 4 1020 3357 211 24 35 chr6 57046827 57047524 -92469513 - L1_Mur1 LINE L1 -5873 1111 37 4 1020 33445 55 3 2 chr6 57047592 57050334 -92466703 - L1Md_F3 LINE L1 -2 6582 3840 5 1020 420 20 0 0 chr6 57050334 57050383 -92466654 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 5 1020 33445 79 2 8 chr6 57050383 57053611 -92463426 - L1Md_F3 LINE L1 -2044 3839 633 5 1020 2025 228 27 10 chr6 57053612 57054201 -92462836 - L1_Mur3 LINE L1 -1449 4431 3833 5 1020 2578 184 44 15 chr6 57054218 57054763 -92462274 + RMER17C-int LTR ERVK 2678 3238 0 5 1020 574 261 42 32 chr6 57054763 57055041 -92461996 + RMER17C LTR ERVK 1 482 -327 5 1020 677 236 55 52 chr6 57055071 57055397 -92461640 + RMER17C LTR ERVK 84 410 0 5 1020 978 191 42 0 chr6 57055408 57055597 -92461440 + Lx4B LINE L1 6424 6620 -438 5 1020 1440 308 49 20 chr6 57055850 57056776 -92460261 - Lx6 LINE L1 -27 7433 6201 5 1020 580 231 66 10 chr6 57056769 57056966 -92460071 - L1_Rod LINE L1 -3872 1975 1768 5 1020 232 132 19 19 chr6 57057061 57057115 -92459922 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 1020 3243 151 15 17 chr6 57057130 57057662 -92459375 - Lx3A LINE L1 -7 6974 6444 5 1020 5542 123 22 26 chr6 57057669 57058632 -92458405 - L1_Mur1 LINE L1 -675 5211 4253 6 1020 537 223 70 32 chr6 57058671 57058856 -92458181 - L1_Rod LINE L1 -4187 1660 1469 5 1020 26 82 0 0 chr6 57061402 57061463 -92455574 + AT_rich Low_complexity Low_complexity 1 61 0 6 1020 273 57 0 0 chr6 57061529 57061564 -92455473 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 1020 230 254 18 0 chr6 57061919 57061974 -92455063 + (TATG)n Simple_repeat Simple_repeat 1 56 0 6 1020 567 304 27 36 chr6 57062301 57062523 -92454514 + Lx9 LINE L1 5878 6097 -1547 6 1020 275 333 9 36 chr6 57064354 57064466 -92452571 - B3 SINE B2 0 216 108 6 1020 345 47 0 0 chr6 57065075 57065118 -92451919 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1020 3840 259 53 16 chr6 57065297 57066419 -92450618 - Lx7 LINE L1 -561 7135 5973 6 1020 556 227 72 25 chr6 57066462 57066697 -92450340 - L1_Rod LINE L1 -4118 1729 1484 6 1020 393 22 0 0 chr6 57067991 57068037 -92449000 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1020 6466 97 9 45 chr6 57068147 57068343 -92448694 + L1_Mur1 LINE L1 2467 2636 -3250 7 1020 5332 68 0 7 chr6 57068343 57069043 -92447994 - L1Md_F2 LINE L1 0 6582 5888 7 1020 6466 97 9 45 chr6 57069043 57069894 -92447143 + L1_Mur1 LINE L1 2637 3476 -2410 7 1020 2628 112 21 13 chr6 57069892 57070582 -92446455 + L1_Mur1 LINE L1 4215 5327 -559 7 1020 8021 89 42 16 chr6 57070582 57071763 -92445274 + Lx3_Mus LINE L1 5798 7009 0 7 1020 25 51 0 0 chr6 57071763 57071802 -92445235 + AT_rich Low_complexity Low_complexity 1 39 0 7 1020 1394 209 64 21 chr6 57072060 57072436 -92444601 - Lx7 LINE L1 -232 5648 5257 6 1020 2785 118 39 28 chr6 57072436 57072899 -92444138 + Lx LINE L1 6181 6648 -6 7 1020 422 173 12 0 chr6 57072903 57072984 -92444053 - MERVL_2A-int LTR ERVL -4475 1286 1205 7 1020 1407 260 53 6 chr6 57073161 57073501 -92443536 - MTC-int LTR MaLR -684 574 219 7 1020 419 138 96 36 chr6 57073485 57073504 -92443533 + RLTR25B LTR ERVK 941 957 -71 7 1020 202 29 57 0 chr6 57073504 57073539 -92443498 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 1020 419 138 96 36 chr6 57073539 57073602 -92443435 + RLTR25B LTR ERVK 958 1028 0 7 1020 634 236 0 16 chr6 57073620 57073749 -92443288 - MT2A LTR ERVL -406 127 1 7 1020 225 219 68 0 chr6 57073756 57073829 -92443208 - Lx7 LINE L1 -1711 4169 4092 6 1020 4788 141 82 1 chr6 57073838 57075043 -92441994 + L1_Mur2 LINE L1 531 1825 -4052 8 1020 315 0 0 0 chr6 57075043 57075078 -92441959 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1020 513 0 0 0 chr6 57075078 57075134 -92441903 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1020 4788 112 43 2 chr6 57075134 57075332 -92441705 + L1_Mur2 LINE L1 1826 2038 -3839 8 1020 1344 158 4 0 chr6 57075333 57075573 -92441464 - L1_Mur2 LINE L1 -588 5289 5049 8 1020 252 0 0 0 chr6 57076431 57076459 -92440578 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 8 1020 189 0 0 0 chr6 57076554 57076575 -92440462 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1020 5423 63 6 19 chr6 57076864 57077594 -92439443 + L1_Mm LINE L1 4339 5058 -825 8 1020 6565 47 17 11 chr6 57077598 57078437 -92438600 + L1Md_F2 LINE L1 5739 6582 0 8 1020 7556 175 88 46 chr6 57078633 57080411 -92436626 - L1_Mur2 LINE L1 -820 5057 3205 8 1020 478 191 16 0 chr6 57080431 57080557 -92436480 + GA-rich Low_complexity Low_complexity 2 129 0 8 1020 444 288 0 48 chr6 57080649 57080817 -92436220 - L1_Rod LINE L1 -3310 2537 2378 8 1020 3235 192 50 52 chr6 57082112 57083035 -92434002 - L1_Rod LINE L1 -3461 2386 1466 8 1020 22 0 0 0 chr6 57083827 57083849 -92433188 + AT_rich Low_complexity Low_complexity 1 22 0 9 1020 231 337 39 29 chr6 57084978 57085082 -92431955 + PB1D7 SINE Alu 4 108 -12 9 1020 432 0 0 0 chr6 57085090 57085138 -92431899 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1020 393 313 75 85 chr6 57085276 57085475 -92431562 - B3A SINE B2 0 198 2 9 1020 747 272 42 60 chr6 57086091 57086471 -92430566 + Lx9 LINE L1 5874 6246 -1398 9 1020 432 267 53 0 chr6 57088299 57088430 -92428607 - B3 SINE B2 -6 210 73 9 1020 22 0 0 0 chr6 57088443 57088465 -92428572 + AT_rich Low_complexity Low_complexity 1 22 0 9 1020 527 337 59 6 chr6 57089028 57089198 -92427839 - B4 SINE B4 -4 288 110 9 1020 982 220 71 51 chr6 57089244 57089689 -92427348 - Lx7 LINE L1 -4 7692 7190 9 1020 1496 199 95 0 chr6 57089695 57090022 -92427015 + RLTR24 LTR ERV1 172 529 0 9 1020 1891 196 30 36 chr6 57090028 57090499 -92426538 - L1_Mur3 LINE L1 -1209 4671 4204 1 1020 955 256 5 18 chr6 57090503 57090726 -92426311 + URR1B DNA MER1_type 6 225 0 1 1020 993 259 208 21 chr6 57090751 57091130 -92425907 - MT2A LTR ERVL 0 533 84 1 1020 868 149 112 22 chr6 57091175 57091354 -92425683 + B2_Mm2 SINE B2 1 195 0 1 1020 2030 144 54 36 chr6 57091579 57091786 -92425251 + L1_Mur2 LINE L1 3224 3440 -2437 1 1020 2716 72 0 11 chr6 57091786 57092136 -92424901 + ORR1A1 LTR MaLR 1 346 0 1 1020 2030 144 54 36 chr6 57092136 57092317 -92424720 + L1_Mur2 LINE L1 3441 3619 -2258 1 1020 7360 181 34 20 chr6 57092316 57093879 -92423158 + L1_Mur2 LINE L1 4023 5606 -271 1 1020 33567 88 5 7 chr6 57093869 57098848 -92418189 + Lx4B LINE L1 630 5586 -297 1 1020 7467 71 4 3 chr6 57098848 57099831 -92417206 + L1Md_F2 LINE L1 5587 6570 -12 1 1020 33567 169 18 6 chr6 57099831 57100930 -92416107 + Lx4B LINE L1 5587 6702 -356 1 1020 654 229 5 68 chr6 57100949 57101141 -92415896 + Lx4B LINE L1 6876 7055 -3 1 1020 556 229 7 30 chr6 57101152 57101286 -92415751 - MTC-int LTR MaLR -1021 237 107 1 1020 1748 218 100 91 chr6 57101286 57101866 -92415171 + RMER4B LTR ERVK 1 585 0 1 1020 575 191 9 0 chr6 57101866 57101976 -92415061 - MTC-int LTR MaLR -1146 112 2 1 1020 1662 225 18 97 chr6 57101980 57102432 -92414605 - MTC LTR MaLR -5 416 1 1 1020 235 269 0 0 chr6 57102725 57102777 -92414260 + GA-rich Low_complexity Low_complexity 2 53 0 1 1020 216 130 0 0 chr6 57102799 57102845 -92414192 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1020 3031 221 68 49 chr6 57102938 57103998 -92413039 - L1_Rod LINE L1 -3298 2549 1470 1 1020 2967 43 0 16 chr6 57104850 57105224 -92411813 - L1_Mus1 LINE L1 -563 6004 5637 1 1020 4215 82 17 3 chr6 57105718 57106296 -92410741 - L1Md_F2 LINE L1 -5 6577 5992 1 1020 21 0 0 0 chr6 57107708 57107729 -92409308 + AT_rich Low_complexity Low_complexity 1 21 0 1 1020 425 122 0 13 chr6 57107787 57107862 -92409175 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 1020 29 28 0 0 chr6 57107945 57107981 -92409056 + AT_rich Low_complexity Low_complexity 1 36 0 1 1020 442 237 72 22 chr6 57109872 57110010 -92407027 - B3 SINE B2 0 216 72 1 1020 1330 228 68 11 chr6 57110073 57110507 -92406530 - Lx4B LINE L1 -21 6979 6498 1 1020 2862 222 34 6 chr6 57110906 57111657 -92405380 - Lx4B LINE L1 0 7050 6176 1 1020 5875 180 41 11 chr6 57111665 57113312 -92403725 + Lx2B LINE L1 4653 6354 -646 1 1020 3484 60 16 0 chr6 57113322 57113768 -92403269 - L1Md_F2 LINE L1 -497 6085 5633 1 1020 3493 78 0 2 chr6 57113769 57114232 -92402805 + L1Md_F2 LINE L1 6109 6570 -12 1 1020 2755 208 32 25 chr6 57114257 57114885 -92402152 + Lx2B LINE L1 6343 6974 -2 1 1020 819 307 64 26 chr6 57115001 57115312 -92401725 + MERVL_2A-int LTR ERVL 1942 2264 -3497 1 1020 1570 253 8 112 chr6 57115364 57115866 -92401171 - RMER5 LTR ERV1 -84 450 1 1 1020 1347 266 60 56 chr6 57115903 57116349 -92400688 + MERVL_2A-int LTR ERVL 2261 2708 -3053 1 1020 3765 284 44 11 chr6 57116372 57116760 -92400277 + MERVL_2A-int LTR ERVL 2797 3184 -2577 1 1020 4176 102 8 8 chr6 57116760 57117380 -92399657 + L1_Mus3 LINE L1 6017 6636 -2 1 1020 3765 284 44 11 chr6 57117380 57118129 -92398908 + MERVL_2A-int LTR ERVL 3185 3971 -1790 1 1020 616 291 33 39 chr6 57118582 57118625 -92398412 + L1M2 LINE L1 4714 4756 -1387 1 1020 210 37 0 0 chr6 57118625 57118652 -92398385 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 1 1020 616 291 33 39 chr6 57118652 57118915 -92398122 + L1M2 LINE L1 4757 5018 -1125 1 1020 1225 212 0 8 chr6 57118913 57119155 -92397882 - L1_Mur1 LINE L1 -182 5695 5456 1 1020 12216 169 35 30 chr6 57119155 57119468 -92397569 - L1_Mur1 LINE L1 -995 4891 4593 1 1020 1116 68 7 7 chr6 57119468 57119616 -92397421 + B1_Mus1 SINE Alu 1 148 0 1 1020 12216 169 35 30 chr6 57119616 57122001 -92395036 - L1_Mur1 LINE L1 -1294 4592 2181 1 1020 284 309 64 83 chr6 57122080 57122470 -92394567 - RLTR20D LTR ERVK -254 438 23 1 1020 715 242 51 5 chr6 57122470 57122686 -92394351 - L1_Mur1 LINE L1 -3709 2177 1952 1 1020 8643 52 1 0 chr6 57122688 57124456 -92392581 - L1Md_F2 LINE L1 -12 6570 4801 1 1020 3753 164 23 1 chr6 57124454 57125399 -92391638 - L1_Mur1 LINE L1 -1949 1965 995 1 1020 529 262 7 0 chr6 57125738 57125883 -92391154 - MERVL_2A-int LTR ERVL -4411 1350 1205 1 1020 2012 247 70 38 chr6 57126068 57126623 -92390414 - MTC-int LTR MaLR -682 576 4 1 1020 1115 229 249 15 chr6 57126624 57126965 -92390072 - MTC LTR MaLR 0 421 1 1 1020 264 122 0 0 chr6 57127035 57127076 -92389961 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 1020 201 255 21 0 chr6 57127633 57127680 -92389357 + GA-rich Low_complexity Low_complexity 5 52 0 1 1020 24 0 0 0 chr6 57128193 57128217 -92388820 + AT_rich Low_complexity Low_complexity 1 24 0 1 1020 234 150 0 0 chr6 57128772 57128812 -92388225 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1020 28756 104 22 26 chr6 57129147 57132196 -92384841 - L1_Mus2 LINE L1 -2 6564 3454 1 1020 684 0 0 0 chr6 57132196 57132272 -92384765 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 1 1020 28756 126 24 29 chr6 57132272 57135166 -92381871 - L1_Mus2 LINE L1 -2430 3453 675 1 1020 1318 46 0 0 chr6 57135692 57135865 -92381172 - L1Md_A LINE L1 0 6582 6410 1 1020 261 0 0 0 chr6 57136631 57136660 -92380377 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1020 3393 197 91 92 chr6 57137009 57137900 -92379137 + RMER19B LTR ERVK 1 890 -12 1 1020 463 271 78 0 chr6 57139444 57139573 -92377464 - B3 SINE B2 0 216 78 1 1020 26 30 0 0 chr6 57139701 57139734 -92377303 + AT_rich Low_complexity Low_complexity 1 33 0 1 1020 662 238 41 0 chr6 57139768 57139915 -92377122 + MTB_Mm LTR MaLR 18 170 -251 1 1020 2843 159 116 30 chr6 57139915 57140865 -92376172 + RLTR13D1 LTR ERVK 1 1023 0 1 1020 991 230 53 31 chr6 57140865 57141117 -92375920 + MTB_Mm LTR MaLR 147 380 -27 1 1020 1959 232 22 35 chr6 57141120 57141665 -92375372 - L1_Mur3 LINE L1 -662 5218 4681 1 1020 675 118 100 8 chr6 57141665 57141785 -92375252 + RLTR24 LTR ERV1 1 131 -398 1 1020 4087 194 62 62 chr6 57141792 57142682 -92374355 - RMER19B LTR ERVK -12 890 1 1 1020 1886 159 85 139 chr6 57142682 57143414 -92373623 - MurERV4_19-int LTR ERVK 0 5780 5089 1 1020 782 168 37 37 chr6 57143414 57143631 -92373406 - L1_Mur3 LINE L1 -1430 4450 4234 1 1020 402 269 12 64 chr6 57143640 57143651 -92373386 - CYRA11_Mm Unknown Y-chromosome -220 397 347 1 1020 628 257 0 0 chr6 57143651 57143791 -92373246 + URR1B DNA MER1_type 1 140 -85 1 1020 402 269 12 64 chr6 57143791 57143811 -92373226 - CYRA11_Mm Unknown Y-chromosome -220 346 236 1 1020 306 156 0 0 chr6 57143811 57143856 -92373181 + L1VL4 LINE L1 21 65 -6237 1 1020 8756 97 26 39 chr6 57143853 57145288 -92371749 + L1_Mm LINE L1 2443 3875 -2008 1 1020 1115 83 0 7 chr6 57145288 57145434 -92371603 - B1_Mm SINE Alu 0 147 3 1 1020 6836 244 75 79 chr6 57145434 57147332 -92369705 + L1_Mm LINE L1 3876 5765 -118 1 1021 243 23 44 22 chr6 57147479 57147524 -92369513 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 1 1021 975 269 69 20 chr6 57147896 57148285 -92368752 - RMER1C Other Other -48 1294 773 1 1021 3913 207 52 51 chr6 57148593 57149218 -92367819 - L1_Mur3 LINE L1 -2667 3213 2545 1 1021 2691 36 2 208 chr6 57149218 57149709 -92367328 + RLTR10 LTR ERVK 1 390 0 1 1021 299 26 0 0 chr6 57149711 57149749 -92367288 - tRNA-Phe-TTY tRNA tRNA 0 76 39 1 1021 2415 109 104 25 chr6 57149750 57150190 -92366847 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1021 3913 207 52 51 chr6 57150190 57150274 -92366763 - L1_Mur3 LINE L1 -3336 2544 2465 1 1021 188 34 0 33 chr6 57150274 57150304 -92366733 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1021 3913 207 52 51 chr6 57150304 57150665 -92366372 - L1_Mur3 LINE L1 -3416 2464 2099 1 1021 23 33 0 0 chr6 57151227 57151257 -92365780 + AT_rich Low_complexity Low_complexity 1 30 0 1 1021 2299 269 61 10 chr6 57151560 57152236 -92364801 - MERVL_2A-int LTR ERVL -1790 3971 3262 1 1021 1179 197 52 94 chr6 57152243 57152702 -92364335 - L1_Rod LINE L1 -3944 1903 1464 1 1021 236 309 102 81 chr6 57155270 57155467 -92361570 - RMER2 LTR ERV1 0 567 367 1 1021 544 129 10 10 chr6 57155729 57155831 -92361206 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 1 1021 503 297 8 8 chr6 57155978 57156107 -92360930 - B3 SINE B2 -86 130 2 1 1021 276 100 0 0 chr6 57156328 57156368 -92360669 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 1 1021 1013 97 6 33 chr6 57156368 57156549 -92360488 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 1 1021 450 0 0 0 chr6 57157351 57157401 -92359636 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1021 3176 34 21 3 chr6 57157538 57157927 -92359110 - MTA_Mm LTR MaLR 0 396 1 1 1021 435 304 37 81 chr6 57158607 57158990 -92358047 + Lx9 LINE L1 5879 6244 -1400 1 1021 7534 185 34 12 chr6 57160771 57162238 -92354799 - Lx4A LINE L1 -1 7057 5587 1 1021 378 0 0 0 chr6 57162239 57162281 -92354756 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1021 2776 84 18 5 chr6 57162285 57162679 -92354358 - MTB LTR MaLR 0 400 2 1 1021 594 159 56 0 chr6 57162679 57162786 -92354251 - Lx4A LINE L1 -330 5547 5435 1 1021 17683 209 49 18 chr6 57162788 57163682 -92353355 + Lx4B LINE L1 1187 2052 -3834 1 1021 519 31 0 0 chr6 57163682 57163747 -92353290 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1021 17683 229 59 19 chr6 57163747 57168015 -92349022 + Lx4B LINE L1 2053 6570 -427 1 1021 1717 168 15 24 chr6 57168015 57168345 -92348692 + ORR1A2 LTR MaLR 1 327 0 1 1021 2216 312 99 19 chr6 57168345 57168726 -92348311 + Lx4B LINE L1 6571 6986 -11 1 1021 465 196 10 30 chr6 57168751 57168851 -92348186 - MTC-int LTR MaLR -1055 203 106 1 1021 1598 225 38 29 chr6 57168874 57169367 -92347670 + RMER4B LTR ERVK 59 585 0 1 1021 483 192 29 0 chr6 57169367 57169468 -92347569 - MTC-int LTR MaLR -1153 105 2 1 1021 1076 256 53 39 chr6 57169467 57169520 -92347517 - MTC LTR MaLR 0 421 376 1 1021 310 125 0 45 chr6 57169520 57169587 -92347450 + Lx LINE L1 6589 6652 -2 1 1021 1076 256 53 39 chr6 57169587 57169817 -92347220 - MTC LTR MaLR -46 375 134 1 1021 22 0 0 0 chr6 57169833 57169855 -92347182 + AT_rich Low_complexity Low_complexity 1 22 0 1 1021 36293 42 0 3 chr6 57169882 57176098 -92340939 - L1Md_T LINE L1 0 6585 290 1 1021 640 216 8 0 chr6 57176128 57176253 -92340784 - MTC LTR MaLR -295 126 1 1 1021 354 314 16 0 chr6 57176559 57176680 -92340357 + GA-rich Low_complexity Low_complexity 3 125 0 1 1021 2250 203 73 10 chr6 57176821 57177433 -92339604 - L1_Rod LINE L1 -3399 2448 1798 1 1021 6266 129 24 8 chr6 57177431 57178526 -92338511 + Lx LINE L1 5537 6648 -6 1 1021 283 218 11 11 chr6 57178659 57178747 -92338290 + Lx4B LINE L1 6970 7057 -1 1 1021 207 0 0 0 chr6 57178764 57178787 -92338250 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1021 510 227 55 55 chr6 57178875 57179164 -92337873 - L1_Rod LINE L1 -4093 1754 1466 1 1021 1508 42 0 5 chr6 57179285 57179478 -92337559 + L1Md_F2 LINE L1 5395 5586 -297 1 1021 7796 53 6 13 chr6 57179478 57179557 -92337480 + L1Md_F2 LINE L1 5587 5665 -917 1 1021 2489 118 74 39 chr6 57179557 57180016 -92337021 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1021 7796 53 6 13 chr6 57180016 57180938 -92336099 + L1Md_F2 LINE L1 5666 6581 -1 1 1021 1368 271 29 7 chr6 57182458 57182870 -92334167 - Lx2B LINE L1 -8 6992 6572 1 1021 319 278 85 57 chr6 57184386 57184527 -92332510 - B3 SINE B2 0 216 72 1 1021 22 35 0 0 chr6 57184563 57184592 -92332445 + AT_rich Low_complexity Low_complexity 1 29 0 1 1021 1139 247 34 8 chr6 57184609 57185050 -92331987 - Lx4B LINE L1 -38 7020 6464 1 1021 2510 236 28 14 chr6 57185422 57186218 -92330819 - Lx4B LINE L1 -1 6999 6176 1 1021 5985 186 55 11 chr6 57186231 57188429 -92328608 + Lx3C LINE L1 4647 6974 -2 1 1021 697 309 81 7 chr6 57188560 57188870 -92328167 + MERVL_2A-int LTR ERVL 1942 2274 -3487 1 1021 1175 275 23 122 chr6 57188914 57189349 -92327688 - RMER5 LTR ERV1 -84 450 59 1 1021 2221 258 73 2 chr6 57189360 57190403 -92326634 + MERVL_2A-int LTR ERVL 2884 4007 -1754 1 1021 530 137 87 24 chr6 57190766 57190893 -92326144 - Lx2 LINE L1 -2 6995 6861 1 1021 2990 71 5 18 chr6 57190893 57191294 -92325743 + MTA_Mm LTR MaLR 1 396 0 2 1021 7738 87 9 6 chr6 57191294 57192388 -92324649 + MTA_Mm-int LTR MaLR 1 1098 0 2 1021 672 76 11 11 chr6 57192408 57192501 -92324536 + MTB LTR MaLR 308 400 0 2 1021 1513 156 0 0 chr6 57192501 57192758 -92324279 - Lx2 LINE L1 -132 6865 6609 1 1021 8571 183 36 7 chr6 57192865 57194622 -92322415 - L1VL4 LINE L1 -1274 4603 2789 2 1021 261 0 0 0 chr6 57194622 57194651 -92322386 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1021 8571 183 36 7 chr6 57194651 57194854 -92322183 - L1VL4 LINE L1 -3089 2788 2586 2 1021 3856 93 6 2 chr6 57194864 57195390 -92321647 - L1_Mus3 LINE L1 -12 6626 6099 2 1021 4003 82 3 15 chr6 57195390 57196060 -92320977 + L1_Mus3 LINE L1 5489 6152 -486 2 1021 690 187 0 0 chr6 57196057 57196196 -92320841 - L1VL4 LINE L1 -3281 2605 2467 2 1021 5364 118 43 111 chr6 57196206 57197271 -92319766 + MTB-int LTR MaLR 106 1098 0 2 1021 2443 91 9 9 chr6 57197271 57197616 -92319421 + MTB LTR MaLR 1 345 -55 2 1021 4628 199 27 35 chr6 57197628 57197912 -92319125 - L1VL4 LINE L1 -3418 2468 2222 2 1021 1256 27 0 0 chr6 57197912 57198058 -92318979 - B1_Mm SINE Alu 0 147 2 2 1021 4628 199 27 35 chr6 57198058 57198122 -92318915 - L1VL4 LINE L1 -3665 2221 2161 2 1021 183 42 0 0 chr6 57198122 57198146 -92318891 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 1021 4628 199 32 28 chr6 57198146 57199447 -92317590 - L1VL4 LINE L1 -3726 2160 817 2 1021 588 95 0 0 chr6 57199654 57199738 -92317299 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 2 1021 1163 194 27 0 chr6 57199738 57200001 -92317036 - L1_Mur3 LINE L1 -2995 2882 2613 2 1021 441 36 0 0 chr6 57200027 57200082 -92316955 + (TTTTG)n Simple_repeat Simple_repeat 5 59 0 2 1021 1182 222 45 9 chr6 57200443 57200774 -92316263 - L1_Mur3 LINE L1 -3382 2498 2156 2 1021 791 210 46 139 chr6 57200762 57201221 -92315816 - L1_Rod LINE L1 -3966 1881 1466 2 1021 28 61 0 0 chr6 57202559 57202608 -92314429 + AT_rich Low_complexity Low_complexity 1 49 0 2 1021 27 0 0 0 chr6 57203137 57203164 -92313873 + AT_rich Low_complexity Low_complexity 1 27 0 2 1021 2526 92 28 16 chr6 57203167 57203554 -92313483 - L1_Mus3 LINE L1 -5 6633 6242 2 1021 308 216 14 0 chr6 57203878 57203952 -92313085 - HAL1 LINE L1 -844 1663 1589 2 1021 22 35 0 0 chr6 57204654 57204683 -92312354 + AT_rich Low_complexity Low_complexity 1 29 0 2 1021 510 17 0 0 chr6 57205295 57205354 -92311683 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1021 432 0 0 0 chr6 57205768 57205816 -92311221 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1021 21 36 0 0 chr6 57207041 57207069 -92309968 + AT_rich Low_complexity Low_complexity 1 28 0 2 1021 1861 69 0 28 chr6 57207114 57207366 -92309671 - L1_Mus1 LINE L1 -2 6565 6321 2 1021 374 332 82 5 chr6 57207477 57207671 -92309366 - B3 SINE B2 -5 211 3 2 1021 1221 44 6 6 chr6 57209091 57209250 -92307787 + B2_Mm1a SINE B2 2 160 -33 2 1021 275 0 0 28 chr6 57209250 57209286 -92307751 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 1021 421 258 116 8 chr6 57209329 57209458 -92307579 - B3 SINE B2 -1 215 73 2 1021 185 108 27 0 chr6 57209576 57209613 -92307424 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1021 335 369 112 6 chr6 57210086 57210255 -92306782 - B4 SINE B4 -2 290 104 2 1021 3723 310 57 30 chr6 57210285 57210583 -92306454 - Lx7 LINE L1 -5 7455 7152 2 1021 432 0 0 0 chr6 57210583 57210631 -92306406 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 1021 4742 244 69 11 chr6 57210631 57212522 -92304515 - Lx7 LINE L1 -511 7185 5217 2 1021 735 257 31 67 chr6 57212522 57212747 -92304290 + MTB_Mm LTR MaLR 1 217 -190 2 1021 212 54 54 0 chr6 57212751 57212788 -92304249 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 2 1021 1900 212 34 85 chr6 57212790 57213295 -92303742 + RLTR24 LTR ERV1 49 527 -2 2 1021 24 0 0 0 chr6 57213307 57213331 -92303706 + AT_rich Low_complexity Low_complexity 1 24 0 2 1021 198 91 0 0 chr6 57213353 57213386 -92303651 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1021 1214 194 41 91 chr6 57213429 57213848 -92303189 - Lx7 LINE L1 -1269 4611 4214 2 1021 698 269 28 37 chr6 57213862 57214078 -92302959 + URR1B DNA MER1_type 6 219 -6 2 1021 1136 248 202 11 chr6 57214107 57214478 -92302559 - MT2A LTR ERVL 0 533 92 2 1021 21 0 0 0 chr6 57214497 57214518 -92302519 + AT_rich Low_complexity Low_complexity 1 21 0 2 1021 955 80 0 0 chr6 57214531 57214656 -92302381 + B1_Mm SINE Alu 3 127 -20 2 1021 222 62 0 0 chr6 57214656 57214688 -92302349 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1021 823 163 22 0 chr6 57214709 57214844 -92302193 + B2_Mm2 SINE B2 1 138 -57 2 1021 2625 147 27 40 chr6 57214844 57215214 -92301823 + MT2C_Mm LTR ERVL 1 358 -117 2 1021 189 0 0 0 chr6 57215214 57215235 -92301802 + (CTG)n Simple_repeat Simple_repeat 2 22 0 2 1021 2625 147 27 40 chr6 57215235 57215345 -92301692 + MT2C_Mm LTR ERVL 359 474 -1 2 1021 2189 133 0 14 chr6 57215347 57215714 -92301323 + MT-int LTR MaLR 1 362 -736 2 1021 25 31 0 0 chr6 57215938 57215970 -92301067 + AT_rich Low_complexity Low_complexity 1 32 0 2 1021 1967 270 51 21 chr6 57216315 57216447 -92300590 - MERVL_2A-int LTR ERVL -1790 3971 3840 2 1021 2020 74 6 94 chr6 57216447 57216788 -92300249 - L1Md_F2 LINE L1 0 6582 6272 2 1021 1967 270 51 21 chr6 57216788 57217355 -92299682 - MERVL_2A-int LTR ERVL -1922 3839 3251 2 1021 1191 62 0 0 chr6 57217471 57217617 -92299420 - B1_Mm SINE Alu -1 146 1 2 1021 4068 107 25 2 chr6 57217622 57218221 -92298816 - Lx3_Mus LINE L1 -1 7008 6396 2 1021 1515 64 0 0 chr6 57218221 57218423 -92298614 - Lx3_Mus LINE L1 -1134 5875 5674 2 1021 708 225 49 101 chr6 57218429 57218795 -92298242 - L1_Rod LINE L1 -4035 1812 1466 2 1021 1086 95 0 20 chr6 57220485 57220635 -92296402 - B1_Mm SINE Alu 0 147 1 2 1021 352 291 29 93 chr6 57221440 57221686 -92295351 - RMER2 LTR ERV1 0 567 338 2 1021 543 267 8 0 chr6 57222356 57222476 -92294561 - B3 SINE B2 -95 121 1 2 1021 6982 65 26 1 chr6 57223027 57224047 -92292990 - L1_Mus2 LINE L1 0 6566 5522 2 1021 231 300 0 16 chr6 57224047 57224108 -92292929 + PB1D7 SINE Alu 34 93 -27 2 1021 297 51 0 0 chr6 57224134 57224173 -92292864 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1021 369 0 0 0 chr6 57224173 57224213 -92292824 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1021 522 31 0 0 chr6 57224624 57224688 -92292349 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1021 215 200 16 16 chr6 57225757 57225818 -92291219 + (TTATA)n Simple_repeat Simple_repeat 5 65 0 2 1021 473 270 137 5 chr6 57225971 57226161 -92290876 - B3 SINE B2 0 216 2 2 1021 419 302 59 59 chr6 57226774 57227147 -92289890 + Lx9 LINE L1 5873 6245 -1399 2 1021 3201 198 35 7 chr6 57228662 57229340 -92287697 - Lx4A LINE L1 -1 7057 6361 2 1021 7394 151 21 16 chr6 57229359 57230952 -92286085 - Lx4A LINE L1 -809 6249 4635 2 1021 2333 146 162 0 chr6 57230952 57231384 -92285653 + RLTR44C LTR ERVK 1 502 0 2 1021 7394 137 19 19 chr6 57231384 57231503 -92285534 - Lx4A LINE L1 -1243 4634 4520 2 1021 1159 226 45 4 chr6 57231519 57231785 -92285252 + Lx4A LINE L1 6782 7058 0 2 1021 1669 225 35 9 chr6 57231788 57232133 -92284904 - MTC-int LTR MaLR -682 576 223 2 1021 14505 212 39 16 chr6 57232414 57233578 -92283459 + Lx4B LINE L1 906 2054 -3823 2 1021 324 0 0 0 chr6 57233578 57233614 -92283423 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1021 14505 199 45 20 chr6 57233614 57235855 -92281182 + Lx4B LINE L1 2055 4419 -1458 2 1021 7382 138 6 5 chr6 57235855 57237023 -92280014 + Lx2 LINE L1 5829 6997 0 2 1021 14505 199 45 20 chr6 57237023 57237633 -92279404 + Lx4B LINE L1 4420 5019 -858 2 1021 33833 35 0 0 chr6 57237620 57243221 -92273816 + L1Md_T LINE L1 1 5589 -297 2 1021 9019 6 0 0 chr6 57243221 57244217 -92272820 + L1Md_T LINE L1 5590 6585 0 2 1021 4415 176 14 10 chr6 57244230 57245108 -92271929 + Lx4B LINE L1 4996 5876 -1 2 1021 22 0 0 0 chr6 57245116 57245138 -92271899 + AT_rich Low_complexity Low_complexity 1 22 0 2 1021 2733 63 0 0 chr6 57245139 57245471 -92271566 - IAPEY3_LTR LTR ERVK 0 332 1 2 1021 54856 64 16 7 chr6 57245471 57249415 -92267622 - IAPEY3-int LTR ERVK 0 7680 3683 2 1021 4210 25 12 2 chr6 57249415 57249903 -92267134 - MT2_Mm LTR ERVL 0 493 1 2 1021 54856 65 7 7 chr6 57249903 57253601 -92263436 - IAPEY3-int LTR ERVK -3998 3682 1 2 1021 2793 54 0 0 chr6 57253601 57253933 -92263104 - IAPEY3_LTR LTR ERVK 0 332 1 2 1021 1363 222 16 19 chr6 57253933 57254309 -92262728 + Lx4B LINE L1 5908 6282 -776 2 1021 33614 69 0 3 chr6 57254310 57260641 -92256396 + L1Md_F2 LINE L1 126 6537 -48 2 1021 912 204 70 37 chr6 57260634 57260711 -92256326 + Lx4B LINE L1 6512 6600 -458 2 1021 3245 108 4 4 chr6 57260711 57261186 -92255851 - MT2C_Mm LTR ERVL 0 475 1 2 1021 912 231 80 38 chr6 57261186 57261488 -92255549 + Lx4B LINE L1 6599 6922 -51 2 1021 320 204 34 134 chr6 57261488 57261606 -92255431 - MTC-int LTR MaLR -1046 212 107 2 1021 551 109 89 18 chr6 57261606 57261718 -92255319 + RMER4B LTR ERVK 1 120 -465 2 1021 278 346 28 56 chr6 57262234 57262378 -92254659 + MLT1D LTR MaLR 18 157 -348 2 1021 396 55 0 0 chr6 57263908 57263963 -92253074 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2 1021 752 234 53 17 chr6 57263963 57264239 -92252798 - Lx4B LINE L1 -4 7054 6677 2 1021 4189 80 5 5 chr6 57264240 57264845 -92252192 + L1_Mm LINE L1 3377 3981 -1902 2 1021 1209 79 0 0 chr6 57264853 57265017 -92252020 - L1_Mus1 LINE L1 0 6567 6404 2 1021 1504 67 0 0 chr6 57265017 57265211 -92251826 + L1_Mus1 LINE L1 6189 6382 -185 2 1021 1365 220 169 2 chr6 57265205 57265643 -92251394 + L1_Mur3 LINE L1 5238 5748 -132 2 1021 740 192 22 205 chr6 57265643 57265911 -92251126 + RMER19C LTR ERVK 1 219 -392 2 1021 588 285 51 15 chr6 57266407 57266681 -92250356 + MERVL_2A-int LTR ERVL 2519 2802 -2959 2 1021 5698 69 15 15 chr6 57266681 57267463 -92249574 + RLTR13C2 LTR ERVK 1 782 -26 2 1021 3862 60 29 27 chr6 57267560 57268071 -92248966 - RLTR1B LTR ERV1 0 512 1 2 1021 2744 93 0 30 chr6 57268332 57268733 -92248304 - L1Md_F2 LINE L1 -19 6563 6175 2 1021 959 329 18 33 chr6 57268883 57269430 -92247607 + L1M2 LINE L1 4708 5246 -897 2 1021 243 0 0 0 chr6 57269445 57269472 -92247565 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1021 527 317 61 13 chr6 57269529 57269842 -92247195 + L1M2 LINE L1 5268 5595 -717 2 1021 3825 260 72 17 chr6 57269966 57271445 -92245592 + Lx7 LINE L1 6091 7696 0 2 1021 559 304 110 6 chr6 57271471 57271653 -92245384 + B4 SINE B4 90 290 -2 2 1021 579 66 0 0 chr6 57271664 57271740 -92245297 + (CATA)n Simple_repeat Simple_repeat 3 78 0 2 1021 1524 90 12 41 chr6 57272251 57272495 -92244542 + L1_Mus3 LINE L1 6402 6638 0 2 1021 261 0 0 0 chr6 57273651 57273680 -92243357 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1021 955 35 0 0 chr6 57273681 57273795 -92243242 - B1_Mm SINE Alu -12 135 22 2 1021 416 163 0 132 chr6 57273704 57273810 -92243227 - MT2B LTR ERVL -337 264 173 2 1021 511 271 58 29 chr6 57274082 57274287 -92242750 - Lx9 LINE L1 -1563 6081 5871 2 1021 587 278 96 20 chr6 57274665 57274863 -92242174 + B3 SINE B2 4 216 0 2 1021 5336 236 97 38 chr6 57274876 57276022 -92241015 - RLTR22_Mur LTR ERVK 0 1848 650 2 1021 1066 88 0 0 chr6 57276022 57276159 -92240878 + B1_Mm SINE Alu 2 138 -9 2 1021 5336 236 97 38 chr6 57276159 57276225 -92240812 - RLTR22_Mur LTR ERVK -1199 649 600 2 1021 198 0 0 0 chr6 57276225 57276247 -92240790 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 1021 5336 236 97 38 chr6 57276247 57276646 -92240391 - RLTR22_Mur LTR ERVK -1249 599 180 2 1021 302 45 0 22 chr6 57276646 57276691 -92240346 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1021 324 0 0 0 chr6 57276694 57276730 -92240307 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1021 5336 236 97 38 chr6 57276730 57276857 -92240180 - RLTR22_Mur LTR ERVK -1669 179 13 2 1021 243 0 0 0 chr6 57277354 57277381 -92239656 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3 1021 1104 101 6 11 chr6 57277381 57277561 -92239476 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 3 1021 261 151 0 0 chr6 57278270 57278323 -92238714 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1022 6289 53 8 0 chr6 57279698 57280487 -92236550 - L1Md_F2 LINE L1 0 6582 5788 3 1022 4315 71 3 10 chr6 57280487 57281095 -92235942 + L1Md_F2 LINE L1 4983 5586 -297 3 1022 7642 64 5 3 chr6 57281096 57282079 -92234958 + L1Md_F2 LINE L1 5588 6572 -10 3 1022 32 0 0 0 chr6 57282079 57282111 -92234926 + AT_rich Low_complexity Low_complexity 1 32 0 3 1022 1684 204 68 57 chr6 57282376 57283022 -92234015 + L1_Rod LINE L1 1467 2119 -3728 3 1022 6013 75 4 0 chr6 57283047 57283856 -92233181 + L1Md_F2 LINE L1 311 1122 -5494 3 1022 18493 85 2 23 chr6 57283856 57287246 -92229791 + L1Md_F2 LINE L1 487 3802 -2081 3 1022 36146 55 22 14 chr6 57287260 57293654 -92223383 - L1Md_A LINE L1 0 6582 133 3 1022 13156 65 3 1 chr6 57293656 57295446 -92221591 + L1Md_F2 LINE L1 3793 5586 -297 3 1022 7950 55 1 1 chr6 57295446 57296439 -92220598 + L1Md_F2 LINE L1 5587 6579 -3 3 1022 30524 78 2 3 chr6 57296445 57300929 -92216108 + L1Md_F2 LINE L1 1108 5586 -297 3 1022 8080 43 3 0 chr6 57300929 57301919 -92215118 + L1Md_F2 LINE L1 5587 6579 -3 3 1022 5302 127 17 14 chr6 57301955 57303605 -92213432 + L1VL2 LINE L1 67 1720 -1895 3 1022 866 148 0 0 chr6 57303608 57303770 -92213267 + L1VL2 LINE L1 2607 2768 -847 3 1022 882 168 0 31 chr6 57303772 57303963 -92213074 + Lx LINE L1 6470 6654 0 3 1022 2137 141 27 15 chr6 57303965 57304375 -92212662 - Lx4A LINE L1 -739 5138 4724 3 1022 5873 154 39 9 chr6 57304376 57305974 -92211063 + Lx4A LINE L1 5166 6837 -221 3 1022 852 250 51 62 chr6 57305984 57306455 -92210582 + RMER2 LTR ERV1 1 567 0 3 1022 1373 279 33 90 chr6 57306597 57307086 -92209951 - RMER5 LTR ERV1 -73 461 1 3 1022 1972 286 15 47 chr6 57307123 57307875 -92209162 + MERVL_2A-int LTR ERVL 2261 2988 -2773 3 1022 2661 239 93 19 chr6 57307892 57308934 -92208103 + Lx7 LINE L1 6578 7696 0 3 1022 268 308 0 0 chr6 57308960 57309025 -92208012 + B4 SINE B4 91 155 -137 3 1022 223 324 63 54 chr6 57309025 57309071 -92207966 + PB1D7 SINE Alu 6 117 -3 3 1022 227 175 0 17 chr6 57309142 57309200 -92207837 + (CATA)n Simple_repeat Simple_repeat 2 58 0 3 1022 621 100 0 0 chr6 57309749 57309839 -92207198 + (TCCA)n Simple_repeat Simple_repeat 4 93 0 3 1022 940 204 54 29 chr6 57309857 57310099 -92206938 - Lx4B LINE L1 -51 7007 6760 3 1022 512 266 57 0 chr6 57310169 57310293 -92206744 + B3 SINE B2 86 216 0 3 1022 466 139 0 44 chr6 57310300 57310413 -92206624 - L1Md_F3 LINE L1 0 6584 6477 3 1022 186 271 28 14 chr6 57311093 57311164 -92205873 - L3b LINE CR1 -273 209 138 3 1022 225 191 14 29 chr6 57312219 57312289 -92204748 - Lx9 LINE L1 -1408 6236 6168 3 1022 312 277 116 0 chr6 57312361 57312473 -92204564 - Lx9 LINE L1 -1649 5995 5871 3 1022 390 42 0 0 chr6 57312836 57312884 -92204153 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1022 1469 38 33 5 chr6 57314330 57314514 -92202523 + B2_Mm1a SINE B2 2 190 -3 3 1022 427 66 0 50 chr6 57314578 57314658 -92202379 + Lx3_Mus LINE L1 6929 7004 -5 3 1022 882 247 32 13 chr6 57314669 57314977 -92202060 + L1_Mur3 LINE L1 4908 5221 -659 3 1022 1762 211 31 46 chr6 57314977 57315390 -92201647 - MTB_Mm LTR MaLR 0 407 1 3 1022 1674 202 103 6 chr6 57315390 57315864 -92201173 + L1_Mur3 LINE L1 5217 5736 -144 3 1022 2417 243 34 12 chr6 57315888 57316471 -92200566 + RMER19C LTR ERVK 1 596 -15 3 1022 3866 169 26 18 chr6 57316471 57317248 -92199789 + MurERV4_19-int LTR ERVK 899 1681 -4099 3 1022 3686 172 17 1 chr6 57317245 57317950 -92199087 + MurERV4_19-int LTR ERVK 2153 2868 -2912 3 1022 5143 31 5 0 chr6 57317972 57318575 -92198462 - L1Md_F3 LINE L1 -2 6582 5977 3 1022 36041 46 0 3 chr6 57318590 57325012 -92192025 - L1Md_T LINE L1 0 6585 83 3 1022 1034 162 0 11 chr6 57325017 57325198 -92191839 + MurERV4_19-int LTR ERVK 2856 3034 -2746 3 1022 3141 8 0 0 chr6 57325200 57325569 -92191468 + L1Md_A LINE L1 5218 5586 -297 3 1022 8874 13 0 0 chr6 57325569 57326565 -92190472 + L1Md_A LINE L1 5587 6582 0 3 1022 5763 155 19 0 chr6 57326566 57327698 -92189339 + MurERV4_19-int LTR ERVK 3025 4178 -1602 3 1022 523 196 51 10 chr6 57327698 57327796 -92189241 - RLTR26 LTR ERVK -538 104 3 3 1022 322 243 0 14 chr6 57327894 57327965 -92189072 - RMER5 LTR ERV1 -68 466 397 3 1022 534 325 19 52 chr6 57328011 57328280 -92188757 - RLTR11B LTR ERVK -158 295 36 3 1022 360 0 0 0 chr6 57328290 57328330 -92188707 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1022 3476 152 84 0 chr6 57328441 57329139 -92187898 + Lx3C LINE L1 4660 5416 -461 3 1022 9378 185 23 11 chr6 57329144 57332120 -92184917 - Lx3C LINE L1 -2 6974 3949 3 1022 6530 185 29 7 chr6 57332115 57333535 -92183502 + Lx3C LINE L1 5517 6974 -2 3 1022 27 0 0 0 chr6 57333577 57333604 -92183433 + AT_rich Low_complexity Low_complexity 1 27 0 3 1022 5841 141 40 16 chr6 57333604 57334640 -92182397 - Lx2 LINE L1 -15 6982 5923 3 1022 4082 262 47 10 chr6 57334731 57335900 -92181137 + Lx7 LINE L1 6121 7332 -364 3 1022 674 128 8 0 chr6 57335901 57336018 -92181019 + (TA)n Simple_repeat Simple_repeat 2 119 0 3 1022 7403 69 10 3 chr6 57336041 57337023 -92180014 + L1Md_F2 LINE L1 4598 5586 -297 3 1022 7906 57 0 4 chr6 57337023 57338023 -92179014 + L1Md_F2 LINE L1 5587 6582 0 3 1022 1930 171 21 24 chr6 57338051 57338428 -92178609 + Lx2 LINE L1 5915 6290 -707 3 1022 342 0 0 0 chr6 57338429 57338467 -92178570 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1022 659 257 53 25 chr6 57338545 57338788 -92178249 + Lx7 LINE L1 7447 7696 0 3 1022 283 356 56 50 chr6 57338813 57339011 -92178026 + B4A SINE B4 91 289 -3 3 1022 653 296 36 50 chr6 57341406 57341769 -92175268 - Lx9 LINE L1 -1416 6228 5871 3 1022 332 258 40 30 chr6 57342362 57342462 -92174575 + B2_Mm2 SINE B2 3 103 -92 3 1022 28 29 0 0 chr6 57342727 57342762 -92174275 + AT_rich Low_complexity Low_complexity 1 35 0 3 1022 417 39 0 0 chr6 57343902 57343953 -92173084 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1022 378 0 0 0 chr6 57344350 57344392 -92172645 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1022 252 0 0 0 chr6 57344973 57345001 -92172036 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1022 413 243 0 9 chr6 57346121 57346229 -92170808 + L1_Rod LINE L1 1466 1572 -4275 3 1022 2481 147 133 0 chr6 57346236 57346666 -92170371 + Lx2 LINE L1 6511 6997 0 3 1022 310 238 29 19 chr6 57346678 57346781 -92170256 + L1_Rod LINE L1 1592 1695 -4152 3 1022 1178 114 0 0 chr6 57346821 57346997 -92170040 + L1_Mus1 LINE L1 6389 6564 -3 3 1022 778 265 57 0 chr6 57347120 57347365 -92169672 + L1_Rod LINE L1 1768 2026 -3821 3 1022 3021 166 128 21 chr6 57347366 57348677 -92168360 + L1_Mur1 LINE L1 212 1663 -4223 3 1022 1190 86 21 11 chr6 57348677 57348865 -92168172 - L1_Mus3 LINE L1 -7 6631 6442 3 1022 579 285 18 46 chr6 57349137 57349420 -92167617 + RMER3D-int LTR ERVK 1112 1386 -1456 3 1022 1980 248 91 55 chr6 57349432 57350248 -92166789 + MYSERV16_I-int LTR ERVK 288 1132 -1194 3 1022 482 171 19 9 chr6 57350248 57350354 -92166683 - L1_Rod LINE L1 -4275 1572 1466 3 1022 345 47 0 0 chr6 57351189 57351232 -92165805 + (ATTG)n Simple_repeat Simple_repeat 4 46 0 3 1022 249 33 0 0 chr6 57351232 57351262 -92165775 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1022 23 54 0 0 chr6 57351974 57352011 -92165026 + AT_rich Low_complexity Low_complexity 1 37 0 3 1022 349 213 0 26 chr6 57352489 57352566 -92164471 + HAL1-3A_ME LINE L1 1944 2018 -840 3 1022 243 0 0 0 chr6 57352590 57352617 -92164420 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1022 547 294 94 6 chr6 57353969 57354150 -92162887 - B3 SINE B2 -17 199 3 3 1022 387 298 84 0 chr6 57355414 57355545 -92161492 - B3 SINE B2 -2 214 73 3 1022 261 0 0 0 chr6 57355663 57355692 -92161345 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1022 29 47 0 0 chr6 57356060 57356103 -92160934 + AT_rich Low_complexity Low_complexity 1 43 0 3 1022 1987 247 79 35 chr6 57356214 57356917 -92160120 - Lx7 LINE L1 -1565 6131 5396 3 1022 186 43 0 0 chr6 57356917 57356940 -92160097 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1022 1052 71 0 41 chr6 57356942 57357089 -92159948 - B1_Mus2 SINE Alu -6 141 1 3 1022 1987 223 75 45 chr6 57357089 57357251 -92159786 - Lx7 LINE L1 -485 5395 5217 3 1022 770 254 45 0 chr6 57357251 57357423 -92159614 + MTC LTR MaLR 1 178 -243 3 1022 698 62 0 10 chr6 57357423 57357520 -92159517 + (TTTC)n Simple_repeat Simple_repeat 2 97 0 3 1022 770 254 45 0 chr6 57357520 57357548 -92159489 + MTC LTR MaLR 179 209 -212 3 1022 21285 88 3 7 chr6 57357552 57358771 -92158266 + L1VL1 LINE L1 219 1371 -4512 3 1022 453 36 0 0 chr6 57358771 57358826 -92158211 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1022 21285 116 11 19 chr6 57358826 57362081 -92154956 + L1VL1 LINE L1 1372 4661 -1222 3 1022 2001 125 3 3 chr6 57362082 57362388 -92154649 - L1_Mm LINE L1 -919 4964 4659 3 1022 13759 66 5 4 chr6 57362382 57364192 -92152845 - L1_Mm LINE L1 -214 5669 3859 3 1022 5928 75 2 9 chr6 57364189 57365080 -92151957 + L1Md_A LINE L1 1163 2047 -3836 3 1022 8137 41 4 3 chr6 57365080 57366074 -92150963 + L1Md_F2 LINE L1 5587 6581 -1 3 1022 381 241 0 11 chr6 57366090 57366178 -92150859 - MT2A LTR ERVL -445 88 2 3 1022 1632 217 71 15 chr6 57366178 57366645 -92150392 - Lx7 LINE L1 -1701 4179 3687 3 1022 2169 292 12 24 chr6 57366673 57367343 -92149694 - RMER1C Other Other -6 1336 675 3 1022 531 0 0 0 chr6 57367595 57367654 -92149383 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1022 1564 207 42 10 chr6 57367656 57368066 -92148971 - Lx7 LINE L1 -2674 3206 2784 3 1022 30 27 0 0 chr6 57368073 57368110 -92148927 + AT_rich Low_complexity Low_complexity 1 37 0 3 1022 7435 184 18 7 chr6 57368115 57369492 -92147545 - Lx4B LINE L1 -2 7056 5665 3 1022 1247 218 65 35 chr6 57369491 57369858 -92147179 - L1_Mur3 LINE L1 -2928 2952 2575 3 1022 28 71 0 0 chr6 57370244 57370300 -92146737 + AT_rich Low_complexity Low_complexity 1 56 0 3 1022 566 315 60 21 chr6 57370327 57370764 -92146273 - L1M2 LINE L1 -577 5735 5282 3 1022 1540 262 17 55 chr6 57370862 57371405 -92145632 - Lx4B LINE L1 -117 6883 6357 3 1022 367 241 0 0 chr6 57371408 57371487 -92145550 + L1_Mur2 LINE L1 5565 5643 -234 3 1022 13766 119 3 2 chr6 57371484 57373606 -92143431 + L1_Mm LINE L1 2129 4252 -1631 3 1022 228 231 37 49 chr6 57373608 57373690 -92143347 + RMER5 LTR ERV1 136 216 -318 3 1022 835 286 43 49 chr6 57373694 57373830 -92143207 + RMER5 LTR ERV1 171 307 -227 3 1022 2763 78 37 20 chr6 57373830 57374234 -92142803 - RLTR9F LTR ERVK -4 411 1 3 1022 835 286 43 49 chr6 57374234 57374402 -92142635 + RMER5 LTR ERV1 308 473 -61 3 1022 628 299 54 0 chr6 57374424 57374645 -92142392 - MERVL_2A-int LTR ERVL -3497 2264 2032 3 1022 365 272 12 0 chr6 57374737 57374818 -92142219 - B3A SINE B2 -109 89 8 4 1022 283 290 65 7 chr6 57374826 57374965 -92142072 - MERVL_2A-int LTR ERVL -4410 1351 1205 3 1022 304 204 276 0 chr6 57375187 57375285 -92141752 - MTC-int LTR MaLR -728 530 406 4 1022 1063 46 0 0 chr6 57375291 57375421 -92141616 + L1_Mm LINE L1 5398 5527 -356 4 1022 1569 231 62 39 chr6 57375421 57375481 -92141556 - MTC-int LTR MaLR -782 476 414 4 1022 7736 53 3 13 chr6 57375481 57376486 -92140551 + L1Md_F2 LINE L1 5588 6582 0 4 1022 1569 231 62 39 chr6 57376486 57376889 -92140148 - MTC-int LTR MaLR -845 413 3 4 1022 1212 252 52 4 chr6 57376892 57377212 -92139825 - MTC LTR MaLR -8 413 71 4 1022 484 204 37 9 chr6 57377253 57377362 -92139675 - MTC LTR MaLR -309 112 1 4 1022 1017 227 77 43 chr6 57378006 57378398 -92138639 - L1_Rod LINE L1 -3974 1873 1469 4 1022 21 0 0 0 chr6 57379319 57379340 -92137697 + AT_rich Low_complexity Low_complexity 1 21 0 4 1022 22 0 0 0 chr6 57380097 57380119 -92136918 + AT_rich Low_complexity Low_complexity 1 22 0 4 1022 489 262 33 59 chr6 57380564 57380829 -92136208 + Lx9 LINE L1 5871 6235 -1409 4 1022 199 261 29 14 chr6 57381892 57381962 -92135075 + L3b LINE CR1 138 208 -274 4 1022 345 254 93 34 chr6 57382633 57382751 -92134286 - B3 SINE B2 -6 210 86 4 1022 962 227 86 31 chr6 57382817 57383108 -92133929 + Lx4B LINE L1 6752 7058 0 4 1022 3068 119 130 6 chr6 57383557 57384081 -92132956 - RLTR1D LTR ERV1 -16 589 1 4 1022 351 0 0 0 chr6 57384261 57384300 -92132737 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1022 216 0 0 0 chr6 57384300 57384323 -92132714 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1022 1277 234 59 12 chr6 57384564 57384589 -92132448 - L1_Mur2 LINE L1 -77 5806 5783 4 1022 578 70 0 0 chr6 57384589 57384675 -92132362 - L1_Mus3 LINE L1 -6 6632 6547 4 1022 1627 148 72 4 chr6 57384675 57384969 -92132068 - L1_Mur2 LINE L1 -101 5782 5472 4 1022 1159 133 25 5 chr6 57385481 57385678 -92131359 - L1_Mur2 LINE L1 -388 5489 5289 4 1022 180 77 0 0 chr6 57385685 57385711 -92131326 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 4 1022 13559 139 25 27 chr6 57385720 57387122 -92129915 - Lx3B LINE L1 -3 6970 5573 4 1022 207 0 0 0 chr6 57387122 57387145 -92129892 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1022 13559 126 7 31 chr6 57387145 57387633 -92129404 - Lx3B LINE L1 -314 5572 5136 4 1022 1636 26 0 0 chr6 57387633 57387823 -92129214 - B2_Mm1a SINE B2 -3 190 1 4 1022 14494 120 11 33 chr6 57387823 57390012 -92127025 - Lx3B LINE L1 -751 5135 2957 4 1022 41125 16 1 6 chr6 57390009 57396392 -92120645 - L1Md_A LINE L1 0 6582 232 4 1022 1085 159 34 42 chr6 57396371 57396607 -92120430 - MusHAL1 LINE L1 -923 1789 1556 4 1022 3700 189 30 19 chr6 57396604 57397320 -92119717 + Lx2B LINE L1 6247 6971 -29 4 1022 207 0 0 0 chr6 57397320 57397343 -92119694 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 4 1022 2028 179 130 29 chr6 57398538 57399111 -92117926 - RLTR22_Mur LTR ERVK -1049 799 164 4 1022 260 67 49 16 chr6 57399111 57399172 -92117865 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1022 2028 179 130 29 chr6 57399172 57399220 -92117817 - RLTR22_Mur LTR ERVK -1685 163 115 4 1022 1965 45 4 25 chr6 57399321 57399596 -92117441 - LTRIS2 LTR ERV1 -295 269 1 4 1022 1039 184 29 0 chr6 57399597 57399804 -92117233 - MuRRS4-int LTR ERV1 -42 5021 4809 4 1022 1022 78 0 14 chr6 57399805 57399948 -92117089 + B1_Mus2 SINE Alu 6 146 -1 4 1022 2655 249 23 21 chr6 57399971 57400627 -92116410 - MuRRS4-int LTR ERV1 -792 4271 3615 4 1022 309 209 0 0 chr6 57401178 57401245 -92115792 + GA-rich Low_complexity Low_complexity 2 68 0 4 1022 25 0 0 0 chr6 57401293 57401318 -92115719 + AT_rich Low_complexity Low_complexity 1 25 0 4 1022 931 237 14 19 chr6 57401410 57401621 -92115416 - Lx5 LINE L1 0 7050 6841 4 1022 912 184 126 15 chr6 57401686 57401747 -92115290 - URR1A DNA MER1_type 0 226 168 4 1022 3088 73 2 2 chr6 57401747 57402143 -92114894 + MTA_Mm LTR MaLR 1 396 0 4 1022 912 184 126 15 chr6 57402143 57402280 -92114757 - URR1A DNA MER1_type -59 167 6 4 1022 7919 52 1 1 chr6 57402543 57403515 -92113522 + L1Md_F2 LINE L1 4615 5586 -297 4 1022 8179 51 0 1 chr6 57403515 57404500 -92112537 + L1Md_F2 LINE L1 5587 6570 -12 4 1022 2441 58 0 3 chr6 57404500 57404796 -92112241 + L1Md_F2 LINE L1 5292 5586 -297 4 1022 8266 43 2 5 chr6 57404796 57405794 -92111243 + L1Md_F2 LINE L1 5587 6581 -1 4 1022 396 0 0 0 chr6 57407692 57407736 -92109301 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1022 198 118 0 0 chr6 57407878 57407912 -92109125 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1022 849 43 0 17 chr6 57407913 57408030 -92109007 - B1_Mus2 SINE Alu 0 147 33 4 1022 2134 194 87 4 chr6 57408359 57408841 -92108196 + RMER5 LTR ERV1 13 534 0 4 127 2582 232 32 101 chr6 57409001 57409650 -92107387 + RMER1B Other Other 244 945 -121 4 1023 3181 32 48 0 chr6 57409650 57410028 -92107009 - MTA_Mm LTR MaLR 0 396 1 4 1023 2582 224 32 107 chr6 57410028 57410187 -92106850 + RMER1B Other Other 946 1063 -3 4 1023 253 128 0 41 chr6 57410289 57410338 -92106699 - MT2A LTR ERVL -3 581 535 4 1023 342 100 0 0 chr6 57410338 57410398 -92106639 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 1023 951 251 149 135 chr6 57410399 57410850 -92106187 - MT2A LTR ERVL -74 459 3 4 1023 1056 99 133 6 chr6 57410851 57411024 -92106013 + B2_Mm2 SINE B2 1 195 0 4 1023 395 55 18 0 chr6 57411034 57411089 -92105948 - MERVL_2A-int LTR ERVL 0 5761 5706 4 1023 268 192 0 52 chr6 57411089 57411166 -92105871 - ORR1A3-int LTR MaLR -1324 639 567 4 1023 4262 158 46 63 chr6 57411174 57412021 -92105016 - MERVL_2A-int LTR ERVL -71 5690 4858 4 1023 4717 176 50 5 chr6 57412017 57412845 -92104192 - MERVL_2A-int LTR ERVL -1799 3962 3098 4 1023 580 236 46 52 chr6 57412925 57413099 -92103938 - RMER5 LTR ERV1 -331 203 31 4 1023 758 221 0 7 chr6 57413129 57413275 -92103762 - B1_Mus2 SINE Alu -2 145 1 4 1023 435 176 53 20 chr6 57413559 57413710 -92103327 + GA-rich Low_complexity Low_complexity 2 157 0 4 1023 2028 217 32 44 chr6 57413710 57414215 -92102822 - Lx7 LINE L1 -219 7477 6979 4 1023 7859 60 11 0 chr6 57414238 57415345 -92101692 - L1_Mus1 LINE L1 0 6567 5450 4 1023 404 19 0 19 chr6 57415345 57415399 -92101638 + (TATG)n Simple_repeat Simple_repeat 4 56 0 4 1023 1078 88 0 0 chr6 57415399 57415547 -92101490 - B2_Mm2 SINE B2 -42 153 6 4 1023 770 248 6 0 chr6 57415603 57415764 -92101273 - Lx6 LINE L1 -818 6642 6481 4 1023 1498 161 64 132 chr6 57415770 57416163 -92100874 + ORR1B1 LTR MaLR 29 394 0 4 1023 207 0 0 0 chr6 57416583 57416606 -92100431 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1023 903 227 156 40 chr6 57416606 57416680 -92100357 - ORR1D2 LTR MaLR -15 355 274 4 1023 1728 179 53 17 chr6 57416680 57417039 -92099998 + ORR1D1 LTR MaLR 1 372 -2 4 1023 903 227 156 40 chr6 57417039 57417071 -92099966 - ORR1D2 LTR MaLR -97 273 237 4 1023 2855 33 135 0 chr6 57417071 57417433 -92099604 + IAPLTR2a LTR ERVK 1 411 0 4 1023 903 227 156 40 chr6 57417433 57417638 -92099399 - ORR1D2 LTR MaLR -134 236 6 4 1023 500 241 0 0 chr6 57417663 57417779 -92099258 - ORR1D2-int LTR MaLR -720 650 535 4 1023 186 133 0 0 chr6 57417782 57417812 -92099225 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 4 1023 606 243 21 0 chr6 57417818 57417962 -92099075 - ORR1D2-int LTR MaLR -1213 157 11 4 1023 3138 88 60 58 chr6 57418109 57418627 -92098410 + MURVY-LTR LTR ERV1 1 519 0 4 1023 226 268 18 0 chr6 57418663 57418719 -92098318 + ORR1D1 LTR MaLR 1 57 -317 4 1023 631 265 146 52 chr6 57418730 57418997 -92098040 - ORR1D2 LTR MaLR -32 338 47 4 1023 30 27 0 0 chr6 57420197 57420234 -92096803 + AT_rich Low_complexity Low_complexity 1 37 0 4 1023 413 36 0 0 chr6 57420256 57420312 -92096725 - L1_Mus1 LINE L1 0 6567 6512 4 1023 22 35 0 0 chr6 57420698 57420727 -92096310 + AT_rich Low_complexity Low_complexity 1 29 0 4 1023 1110 80 0 0 chr6 57420728 57420865 -92096172 + B1_Mus2 SINE Alu 2 138 -9 4 1023 1322 263 77 18 chr6 57420972 57421363 -92095674 - MT2A LTR ERVL -108 425 12 4 1023 4114 173 41 30 chr6 57421668 57422552 -92094485 + L1_Mur2 LINE L1 1862 2754 -3123 4 1023 17386 85 35 3 chr6 57422697 57425507 -92091530 - L1VL4 LINE L1 -145 3414 508 4 1023 21 36 0 0 chr6 57425769 57425797 -92091240 + AT_rich Low_complexity Low_complexity 1 28 0 4 1023 662 234 28 0 chr6 57425811 57425956 -92091081 - B1_Mur4 SINE Alu -1 149 1 4 1023 670 246 80 25 chr6 57425958 57426158 -92090879 - B3 SINE B2 -1 215 5 4 1023 351 0 0 0 chr6 57427438 57427477 -92089560 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1023 288 77 0 0 chr6 57428102 57428141 -92088896 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1023 3853 136 26 7 chr6 57428475 57429169 -92087868 - RMER17D2 LTR ERVK 0 809 103 4 1023 1099 209 19 0 chr6 57429312 57429518 -92087519 - B3 SINE B2 -5 211 2 4 1023 1615 194 30 38 chr6 57429703 57430072 -92086965 + RLTR17 LTR ERVK 324 689 -3 4 1023 21 0 0 0 chr6 57430085 57430106 -92086931 + AT_rich Low_complexity Low_complexity 1 21 0 4 1023 399 21 0 0 chr6 57430174 57430222 -92086815 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1023 898 185 122 10 chr6 57430635 57430832 -92086205 + URR1A DNA MER1_type 1 219 -7 4 1023 2877 72 15 13 chr6 57432121 57432516 -92084521 + MTA_Mm LTR MaLR 1 396 0 4 1023 2170 167 19 5 chr6 57433402 57433775 -92083262 - ORR1C1 LTR MaLR 0 378 1 4 1023 21 36 0 0 chr6 57434172 57434200 -92082837 + AT_rich Low_complexity Low_complexity 1 28 0 4 1023 682 255 7 0 chr6 57434213 57434362 -92082675 - B1_Mur4 SINE Alu 0 150 1 4 1023 633 234 88 26 chr6 57434364 57434557 -92082480 - B3 SINE B2 -1 215 11 4 1023 390 91 0 0 chr6 57435868 57435923 -92081114 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1023 432 82 0 0 chr6 57436370 57436431 -92080606 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1023 3833 135 162 10 chr6 57436763 57437465 -92079572 - RMER17D2 LTR ERVK 0 809 1 4 1023 231 222 16 16 chr6 57437735 57437799 -92079238 + MLT1B LTR MaLR 205 268 -122 4 1023 321 89 0 0 chr6 57438089 57438134 -92078903 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1023 252 0 0 0 chr6 57439275 57439303 -92077734 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1023 213 205 72 0 chr6 57440313 57440396 -92076641 + CT-rich Low_complexity Low_complexity 4 92 0 4 1023 260 281 24 24 chr6 57440439 57440523 -92076514 + C-rich Low_complexity Low_complexity 1 84 0 4 1023 263 315 14 0 chr6 57440612 57440685 -92076352 + C-rich Low_complexity Low_complexity 1 74 0 4 1023 2902 56 59 0 chr6 57440700 57441074 -92075963 - MTA_Mm LTR MaLR 0 396 1 4 1023 8898 57 3 1 chr6 57441074 57442170 -92074867 - MTA_Mm-int LTR MaLR 0 1098 1 4 1023 2946 45 59 3 chr6 57442170 57442545 -92074492 - MTA_Mm LTR MaLR 0 396 1 4 1023 210 250 0 50 chr6 57442631 57442732 -92074305 + C-rich Low_complexity Low_complexity 2 97 0 4 1023 293 329 0 12 chr6 57442776 57442856 -92074181 + G-rich Low_complexity Low_complexity 2 80 0 4 1023 330 278 0 32 chr6 57442866 57443061 -92073976 + C-rich Low_complexity Low_complexity 1 188 0 4 1023 304 325 0 12 chr6 57443100 57443184 -92073853 + G-rich Low_complexity Low_complexity 3 85 0 4 1023 226 347 0 39 chr6 57443193 57443271 -92073766 + C-rich Low_complexity Low_complexity 6 80 0 4 1023 289 217 11 78 chr6 57443294 57443384 -92073653 + C-rich Low_complexity Low_complexity 1 84 0 4 1023 211 127 0 122 chr6 57443439 57443529 -92073508 + G-rich Low_complexity Low_complexity 1 79 0 5 1023 295 362 7 90 chr6 57443558 57443713 -92073324 + C-rich Low_complexity Low_complexity 6 147 0 5 1023 324 350 8 31 chr6 57443744 57443871 -92073166 + G-rich Low_complexity Low_complexity 2 125 0 5 1023 236 104 0 107 chr6 57443876 57443951 -92073086 + C-rich Low_complexity Low_complexity 1 67 0 5 1023 312 306 12 0 chr6 57444027 57444112 -92072925 + G-rich Low_complexity Low_complexity 5 90 0 5 1023 236 300 0 16 chr6 57444129 57444190 -92072847 + C-rich Low_complexity Low_complexity 1 60 0 5 1023 196 180 0 82 chr6 57444218 57444315 -92072722 + C-rich Low_complexity Low_complexity 2 90 0 5 1023 257 307 12 12 chr6 57444345 57444510 -92072527 + CT-rich Low_complexity Low_complexity 1 165 0 5 1023 291 340 10 0 chr6 57444564 57444664 -92072373 + GA-rich Low_complexity Low_complexity 3 103 0 5 1023 7632 22 0 0 chr6 57444664 57445538 -92071499 + L1_Mm LINE L1 4634 5507 -376 5 1023 383 346 164 29 chr6 57446041 57446761 -92070276 + L2a LINE L2 2224 3040 -379 5 1023 477 0 0 0 chr6 57446761 57446814 -92070223 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 5 1023 1173 52 7 0 chr6 57446814 57446950 -92070087 - B1_Mus2 SINE Alu -10 137 1 5 1023 362 346 59 69 chr6 57446950 57447249 -92069788 + L2a LINE L2 3041 3339 -87 5 1023 384 147 0 0 chr6 57447727 57447802 -92069235 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 1023 960 287 29 18 chr6 57447812 57448092 -92068945 - B4A SINE B4 -4 288 6 5 1023 25 0 0 0 chr6 57448391 57448416 -92068621 + AT_rich Low_complexity Low_complexity 1 25 0 5 1023 1366 209 42 63 chr6 57449203 57449585 -92067452 + ORR1D1 LTR MaLR 1 374 0 5 1023 531 0 0 0 chr6 57449821 57449880 -92067157 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1023 315 0 0 0 chr6 57449880 57449914 -92067123 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1023 497 16 16 0 chr6 57450543 57450605 -92066432 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1023 291 296 80 33 chr6 57450805 57451035 -92066002 + MIR SINE MIR 17 259 -9 5 1023 307 343 92 24 chr6 57451557 57451808 -92065229 - L1ME4a LINE L1 -176 5948 5681 5 1023 23 33 0 0 chr6 57451819 57451849 -92065188 + AT_rich Low_complexity Low_complexity 1 30 0 5 1023 258 307 64 45 chr6 57452291 57452448 -92064589 + Lx8 LINE L1 7129 7288 -185 5 1023 4725 187 82 34 chr6 57452470 57454085 -92062952 + Lx4B LINE L1 5302 7057 -1 5 1023 507 134 0 0 chr6 57455210 57455292 -92061745 + (TC)n Simple_repeat Simple_repeat 2 83 0 5 1023 457 299 62 112 chr6 57455297 57455602 -92061435 - B4A SINE B4 0 292 3 5 1023 22 0 0 0 chr6 57455614 57455636 -92061401 + AT_rich Low_complexity Low_complexity 1 22 0 5 1023 255 262 12 23 chr6 57455968 57456054 -92060983 - L3b LINE CR1 -340 142 58 5 1023 285 75 0 0 chr6 57456185 57456225 -92060812 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1023 273 282 14 0 chr6 57456225 57456296 -92060741 + ID4 SINE ID 2 73 -10 5 1023 22 35 0 0 chr6 57457230 57457259 -92059778 + AT_rich Low_complexity Low_complexity 1 29 0 5 1023 250 355 62 31 chr6 57457646 57457687 -92059350 + B4A SINE B4 42 140 -152 5 1023 272 309 0 0 chr6 57457687 57457742 -92059295 + B1F1 SINE Alu 1 55 -94 5 1023 1239 81 0 0 chr6 57458079 57458227 -92058810 + B1_Mus1 SINE Alu 1 148 0 5 1023 189 94 0 0 chr6 57458227 57458259 -92058778 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1023 306 67 0 0 chr6 57458264 57458309 -92058728 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 5 1023 23 33 0 0 chr6 57458553 57458583 -92058454 + AT_rich Low_complexity Low_complexity 1 30 0 5 1023 1679 37 5 0 chr6 57458583 57458772 -92058265 - B2_Mm1t SINE B2 -3 190 1 5 1023 431 306 85 39 chr6 57459063 57459192 -92057845 - B1F SINE Alu -12 136 2 5 1023 21 0 0 0 chr6 57460144 57460165 -92056872 + AT_rich Low_complexity Low_complexity 1 21 0 5 1023 321 207 0 17 chr6 57460165 57460224 -92056813 + PB1 SINE Alu 33 90 -37 5 1023 1273 48 0 14 chr6 57461730 57461878 -92055159 + B1_Mm SINE Alu 1 146 -1 5 1023 221 349 0 0 chr6 57461980 57462046 -92054991 + ID4_ SINE ID 17 82 -1 5 1023 188 32 97 0 chr6 57462189 57462220 -92054817 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 5 1023 383 186 0 26 chr6 57462270 57462346 -92054691 - PB1 SINE Alu -47 80 6 5 1023 259 233 0 40 chr6 57462280 57462356 -92054681 - B4A SINE B4 -138 154 82 5 1023 591 258 0 193 chr6 57462376 57462578 -92054459 + RSINE1 SINE B4 3 165 0 5 1023 282 219 0 0 chr6 57462579 57462643 -92054394 + (CG)n Simple_repeat Simple_repeat 2 65 0 5 1023 23 68 0 0 chr6 57462841 57462885 -92054152 + AT_rich Low_complexity Low_complexity 1 44 0 5 1023 225 196 39 0 chr6 57463016 57463067 -92053970 + ID_B1 SINE B4 172 224 0 5 1023 261 0 0 0 chr6 57463095 57463124 -92053913 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1023 245 148 0 32 chr6 57463126 57463189 -92053848 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 5 1023 247 292 46 19 chr6 57465325 57465433 -92051604 + PB1D10 SINE Alu 1 111 -6 5 1023 288 102 0 0 chr6 57466319 57466368 -92050669 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 5 1023 387 0 0 0 chr6 57466368 57466411 -92050626 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1023 23 68 0 0 chr6 57466971 57467015 -92050022 + AT_rich Low_complexity Low_complexity 1 44 0 5 1023 279 79 0 0 chr6 57468462 57468500 -92048537 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1023 338 272 12 0 chr6 57469201 57469282 -92047755 + ID4 SINE ID 2 83 0 5 1023 261 216 0 73 chr6 57469624 57469679 -92047358 + ID4 SINE ID 3 53 -30 5 1023 21 57 0 0 chr6 57469913 57469948 -92047089 + AT_rich Low_complexity Low_complexity 1 35 0 5 1023 24 0 0 0 chr6 57470527 57470551 -92046486 + AT_rich Low_complexity Low_complexity 1 24 0 5 1023 233 111 0 43 chr6 57470563 57470610 -92046427 + A-rich Low_complexity Low_complexity 4 48 0 5 1023 352 218 12 37 chr6 57470919 57471000 -92046037 + B1_Mur1 SINE Alu 60 138 -11 5 1023 726 253 6 31 chr6 57472137 57472296 -92044741 - RSINE1 SINE B4 -9 156 2 5 1023 468 0 0 0 chr6 57472526 57472578 -92044459 + (TTA)n Simple_repeat Simple_repeat 3 54 0 5 1023 220 276 156 13 chr6 57473048 57473125 -92043912 - ID_B1 SINE B4 -127 97 10 5 1023 222 222 74 0 chr6 57473164 57473218 -92043819 + B1F SINE Alu 91 148 -1 5 1023 469 292 68 20 chr6 57473339 57473486 -92043551 - RSINE1 SINE B4 -8 157 4 5 1023 1431 185 51 187 chr6 57473737 57474170 -92042867 + ORR1D1 LTR MaLR 1 374 0 5 1023 396 244 45 82 chr6 57474293 57474427 -92042610 + B4A SINE B4 141 269 -23 5 1023 357 24 0 0 chr6 57474429 57474471 -92042566 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1023 489 76 0 0 chr6 57475348 57475414 -92041623 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1023 287 295 111 35 chr6 57475526 57475670 -92041367 - MER5A1 DNA MER1_type -5 161 7 5 1023 21 0 0 0 chr6 57475848 57475869 -92041168 + AT_rich Low_complexity Low_complexity 1 21 0 5 1023 413 62 0 0 chr6 57475879 57475927 -92041110 + L1Md_F2 LINE L1 5539 5586 -297 5 1023 8439 51 11 0 chr6 57475927 57476912 -92040125 + L1Md_F2 LINE L1 5587 6582 0 5 1023 1127 258 74 56 chr6 57476941 57477385 -92039652 - Lx8 LINE L1 -80 7393 6942 5 1023 537 224 17 0 chr6 57477668 57477784 -92039253 - B1_Mur1 SINE Alu 0 149 32 5 1023 272 328 16 57 chr6 57477709 57477832 -92039205 - MT2B LTR ERVL -341 260 143 5 1023 357 313 35 9 chr6 57478080 57478196 -92038841 + PB1 SINE Alu 9 127 0 5 1023 21 57 0 0 chr6 57478199 57478234 -92038803 + AT_rich Low_complexity Low_complexity 1 35 0 5 1023 766 122 14 0 chr6 57478288 57478436 -92038601 + (GA)n Simple_repeat Simple_repeat 2 151 0 5 1023 209 79 79 0 chr6 57478709 57478747 -92038290 + GA-rich Low_complexity Low_complexity 6 46 0 5 1023 816 262 42 0 chr6 57478765 57478956 -92038081 + Lx8 LINE L1 6226 6424 -1049 5 1023 533 289 20 15 chr6 57478956 57479153 -92037884 + Lx8 LINE L1 6781 6978 -495 5 1023 901 143 110 55 chr6 57479168 57479368 -92037669 + URR1B DNA MER1_type 15 225 0 5 1023 646 261 91 33 chr6 57479374 57479616 -92037421 + Lx8 LINE L1 6989 7244 -229 5 1023 453 62 0 0 chr6 57479665 57479730 -92037307 + (T)n Simple_repeat Simple_repeat 1 65 0 5 1023 367 289 96 73 chr6 57479730 57479950 -92037087 + Lx8 LINE L1 7248 7472 -1 5 1023 22 0 0 0 chr6 57480486 57480508 -92036529 + AT_rich Low_complexity Low_complexity 1 22 0 5 1023 964 137 68 0 chr6 57480784 57480945 -92036092 + L1_Mus3 LINE L1 6460 6631 -7 5 1023 405 90 0 0 chr6 57481869 57481936 -92035101 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 5 1023 1307 115 27 0 chr6 57482614 57482797 -92034240 - B2_Mm1t SINE B2 -5 188 1 5 1023 1042 109 133 0 chr6 57482851 57483016 -92034021 + B2_Mm2 SINE B2 1 187 -8 5 1023 381 211 40 0 chr6 57483325 57483401 -92033636 + PB1D10 SINE Alu 29 107 -10 5 1023 331 244 111 0 chr6 57483401 57483415 -92033622 + ID_B1 SINE B4 110 209 -15 5 1023 186 43 0 0 chr6 57486322 57486345 -92030692 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 5 1023 1099 99 0 0 chr6 57486350 57486501 -92030536 - B2_Mm2 SINE B2 -44 151 1 5 1023 223 65 15 75 chr6 57486532 57486599 -92030438 + T-rich Low_complexity Low_complexity 1 63 0 5 1023 28 29 0 0 chr6 57486709 57486744 -92030293 + AT_rich Low_complexity Low_complexity 1 35 0 5 1023 602 297 58 42 chr6 57486919 57487221 -92029816 - L1ME3A LINE L1 -30 6143 5841 5 1023 464 276 124 12 chr6 57487224 57487393 -92029644 + B3 SINE B2 28 215 -1 5 1023 210 370 70 8 chr6 57487424 57487552 -92029485 - MIR SINE MIR -106 156 21 5 1023 1546 138 0 18 chr6 57488352 57488581 -92028456 - URR1B DNA MER1_type 0 225 1 5 1023 3714 157 124 10 chr6 57488621 57489347 -92027690 + RLTR25A LTR ERVK 8 816 -287 6 1023 387 0 0 0 chr6 57489347 57489390 -92027647 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1023 3237 175 199 73 chr6 57489390 57489416 -92027621 + RLTR25B LTR ERVK 742 794 -234 6 1023 501 17 0 0 chr6 57489416 57489474 -92027563 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1023 3237 175 199 73 chr6 57489474 57489627 -92027410 + RLTR25B LTR ERVK 795 1027 -1 6 1023 201 331 76 25 chr6 57489827 57489994 -92027043 + MIR SINE MIR 21 204 -64 6 1023 22 0 0 0 chr6 57489996 57490018 -92027019 + AT_rich Low_complexity Low_complexity 1 22 0 6 1023 1224 54 0 13 chr6 57490131 57490280 -92026757 + B1_Mus1 SINE Alu 1 147 -1 6 1023 250 267 141 42 chr6 57490307 57490413 -92026624 + MIR SINE MIR 64 175 -87 6 1023 255 226 108 0 chr6 57490486 57490579 -92026458 + MLT2C2 LTR ERVL 5 107 -357 6 1023 543 260 52 114 chr6 57490974 57491397 -92025640 - RMER2 LTR ERV1 -27 540 5 6 1023 2972 132 8 77 chr6 57491889 57492382 -92024655 + RMER6B LTR ERVK 1 459 -2 6 1023 6427 78 8 6 chr6 57493465 57494288 -92022749 + L1_Mus3 LINE L1 5813 6637 -1 6 1023 609 14 0 0 chr6 57495355 57495425 -92021612 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 6 1023 421 319 0 0 chr6 57496592 57496683 -92020354 + PB1D10 SINE Alu 18 108 -9 6 1023 2162 277 24 34 chr6 57496741 57497411 -92019626 - Lx8 LINE L1 -194 7279 6617 6 1023 2223 150 73 11 chr6 57497568 57497939 -92019098 + ORR1B1 LTR MaLR 1 394 0 6 1023 947 262 93 38 chr6 57498702 57499015 -92018022 - ORR1D1 LTR MaLR -44 330 1 6 1023 1364 269 36 18 chr6 57499030 57499417 -92017620 - Lx9 LINE L1 -199 7445 7052 6 1023 839 230 78 201 chr6 57499442 57499850 -92017187 + ORR1D1 LTR MaLR 1 358 -16 6 1023 614 246 7 21 chr6 57499858 57499999 -92017038 - Lx9 LINE L1 -626 7018 6880 6 1023 1478 292 33 51 chr6 57500056 57500565 -92016472 - Lx5 LINE L1 0 7050 6551 1 1023 520 312 53 9 chr6 57500540 57500766 -92016271 - Lx9 LINE L1 -775 6869 6634 2 1023 307 222 35 124 chr6 57500774 57500887 -92016150 + MT2B LTR ERVL 155 257 -344 3 1023 711 189 44 22 chr6 57500792 57500927 -92016110 + B1_Mur3 SINE Alu 6 143 -6 4 1023 1068 87 0 0 chr6 57500942 57501091 -92015946 + (GAAA)n Simple_repeat Simple_repeat 2 150 0 5 1023 747 262 100 8 chr6 57501099 57501338 -92015699 - Lx9 LINE L1 -1042 6602 6342 2 1023 563 296 75 46 chr6 57501515 57501795 -92015242 + B4A SINE B4 1 288 -4 6 1023 567 262 24 58 chr6 57502262 57502469 -92014568 + Lx6 LINE L1 7076 7275 -185 7 1023 592 294 96 21 chr6 57503062 57503302 -92013735 + MER2 DNA MER2_type 49 306 -39 8 1023 206 62 31 0 chr6 57503339 57503371 -92013666 + (TA)n Simple_repeat Simple_repeat 2 34 0 9 1023 7167 231 69 12 chr6 57503371 57505169 -92011868 + Lx6 LINE L1 5559 7456 -4 1 1023 341 302 36 51 chr6 57505895 57506367 -92010670 + L1_Mur3 LINE L1 1324 1794 -4053 1 1023 1714 284 34 74 chr6 57506444 57506522 -92010515 + L1_Mur3 LINE L1 2607 2675 -3205 1 1023 251 28 0 27 chr6 57506522 57506559 -92010478 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1023 1047 96 0 0 chr6 57506559 57506695 -92010342 - B1_Mm SINE Alu -10 137 2 1 1023 1714 284 34 74 chr6 57506695 57507647 -92009390 + L1_Mur3 LINE L1 2676 3596 -2284 1 1023 229 191 0 45 chr6 57507703 57507769 -92009268 + L1_Mur3 LINE L1 4283 4345 -1535 1 1023 559 243 7 45 chr6 57507773 57507928 -92009109 + MTD LTR MaLR 12 160 -259 1 1023 1333 304 57 19 chr6 57507948 57508703 -92008334 + L1_Mur3 LINE L1 4711 5494 -386 1 1023 188 34 0 33 chr6 57508709 57508739 -92008298 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1023 682 102 78 8 chr6 57508754 57508887 -92008150 + RLTR9B LTR ERVK 162 342 -95 1 1023 1253 83 0 6 chr6 57508957 57509138 -92007899 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1023 216 0 0 0 chr6 57509138 57509162 -92007875 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1023 1210 48 7 0 chr6 57509163 57509309 -92007728 - B1_Mm SINE Alu 0 147 1 1 1023 639 268 17 29 chr6 57509330 57509568 -92007469 + Lx8 LINE L1 5532 5766 -81 2 1023 2955 260 100 22 chr6 57509603 57509941 -92007096 + Lx8 LINE L1 6350 6729 -744 2 1023 207 0 0 0 chr6 57509941 57509964 -92007073 + (TGG)n Simple_repeat Simple_repeat 2 24 0 2 1023 2955 260 100 22 chr6 57509964 57510604 -92006433 + Lx8 LINE L1 6730 7404 -69 2 1023 339 262 25 76 chr6 57510710 57510867 -92006170 - L1MB5 LINE L1 -285 5889 5741 2 1023 629 213 14 35 chr6 57510890 57511031 -92006006 - B1F2 SINE Alu -10 139 2 2 1023 258 32 0 0 chr6 57511031 57511062 -92005975 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 1023 440 302 16 8 chr6 57511067 57511194 -92005843 - ID_B1 SINE B4 -3 221 94 2 1023 1602 251 138 24 chr6 57511191 57511739 -92005298 + MTD-int LTR MaLR 673 1252 -6 2 1023 1067 239 196 22 chr6 57511739 57512051 -92004986 + MTD LTR MaLR 1 366 -53 2 1023 351 0 0 0 chr6 57512066 57512105 -92004932 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1023 525 345 21 0 chr6 57512109 57512254 -92004783 - RSINE1 SINE B4 -16 149 2 2 1023 584 297 23 0 chr6 57512256 57512384 -92004653 - ID_B1 SINE B4 -81 143 13 2 1023 378 152 0 0 chr6 57512447 57512539 -92004498 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 1023 231 114 0 0 chr6 57512560 57512595 -92004442 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 3 1023 462 226 24 0 chr6 57512601 57512685 -92004352 - B3A SINE B2 -98 100 15 3 1023 3304 108 16 2 chr6 57512738 57513249 -92003788 - Lx3_Mus LINE L1 -85 6924 6407 3 1023 553 300 117 42 chr6 57513325 57513404 -92003633 - RMER15 LTR ERVL 0 575 489 3 1023 504 0 0 0 chr6 57513404 57513460 -92003577 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 3 1023 553 300 117 42 chr6 57513460 57513644 -92003393 - RMER15 LTR ERVL -87 488 293 3 1023 1704 248 70 30 chr6 57513804 57514306 -92002731 - RMER5 LTR ERV1 0 534 13 3 1023 332 347 74 17 chr6 57514664 57514840 -92002197 - HAL1-3A_ME LINE L1 -389 2469 2284 3 1023 1221 48 0 0 chr6 57515741 57515887 -92001150 + B1_Mm SINE Alu 2 147 0 3 1023 1228 54 0 0 chr6 57515957 57516104 -92000933 - B1_Mm SINE Alu 0 147 1 3 1023 1773 152 15 72 chr6 57516152 57516259 -92000778 + ORR1A2 LTR MaLR 1 107 -220 4 1023 1060 116 0 0 chr6 57516259 57516406 -92000631 + B1_Mm SINE Alu 1 147 0 4 1023 1773 152 15 72 chr6 57516406 57516632 -92000405 + ORR1A2 LTR MaLR 108 315 -12 4 1023 327 319 44 48 chr6 57517584 57517854 -91999183 - MER52-int LTR ERV1 -3184 3907 3639 4 1023 455 212 9 9 chr6 57518470 57518508 -91998529 - MYSERV-int LTR ERVK -47 6503 6466 4 1023 2420 188 25 21 chr6 57518508 57519020 -91998017 + Lx LINE L1 6141 6654 0 4 1023 455 212 9 9 chr6 57519020 57519095 -91997942 - MYSERV-int LTR ERVK -85 6465 6391 4 1023 796 97 0 0 chr6 57519117 57519230 -91997807 + B1_Mus2 SINE Alu 29 141 -6 4 1023 860 248 138 54 chr6 57519248 57519931 -91997106 + MYSERV-int LTR ERVK 5956 6542 -8 4 1023 944 234 0 38 chr6 57519946 57520186 -91996851 + RLTR11B LTR ERVK 1 231 -222 4 1023 202 213 21 0 chr6 57520214 57520261 -91996776 + G-rich Low_complexity Low_complexity 4 51 0 4 1023 237 33 0 0 chr6 57520490 57520520 -91996517 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1023 271 0 0 49 chr6 57521286 57521327 -91995710 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1023 394 151 97 0 chr6 57521451 57521544 -91995493 - RLTR42-int LTR ERVK -3435 2087 1986 5 1023 186 43 0 0 chr6 57521560 57521583 -91995454 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1023 440 283 57 62 chr6 57521676 57521853 -91995184 - RMER20B LTR ERVK -364 263 88 5 1023 2410 178 58 23 chr6 57523809 57524292 -91992745 - RLTR16 LTR ERVK -3 502 3 5 1023 235 211 0 0 chr6 57524969 57525021 -91992016 + L1_Mur3 LINE L1 109 160 -7568 5 1023 232 67 0 0 chr6 57525028 57525058 -91991979 + B1_Mus1 SINE Alu 2 31 -117 5 1023 12303 178 94 77 chr6 57525058 57526346 -91990691 + L1_Mur3 LINE L1 888 2458 -3422 5 1023 238 67 44 0 chr6 57526346 57526391 -91990646 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 1023 12303 170 100 99 chr6 57526391 57526701 -91990336 + L1_Mur3 LINE L1 2459 2677 -3203 5 1023 417 203 0 0 chr6 57526701 57526775 -91990262 + ID_B1 SINE B4 140 213 -11 5 1023 12303 170 100 99 chr6 57526775 57527242 -91989795 + L1_Mur3 LINE L1 2678 3008 -2872 5 1023 258 32 0 0 chr6 57527242 57527273 -91989764 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1023 12303 170 100 99 chr6 57527273 57529127 -91987910 + L1_Mur3 LINE L1 3009 4915 -965 5 1023 242 155 16 49 chr6 57529128 57529189 -91987848 - L1_Rod LINE L1 -4181 1666 1608 5 1023 3370 222 83 42 chr6 57529194 57530108 -91986929 + Lx6 LINE L1 5939 6889 -571 6 1023 825 110 0 0 chr6 57530108 57530235 -91986802 + (GA)n Simple_repeat Simple_repeat 1 127 0 6 1023 3370 222 83 42 chr6 57530235 57530313 -91986724 + Lx6 LINE L1 6890 6971 -489 6 1023 434 261 305 8 chr6 57531690 57531821 -91985216 + B3 SINE B2 1 170 -46 6 1023 351 0 0 0 chr6 57531851 57531890 -91985147 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1023 31 0 0 0 chr6 57531891 57531922 -91985115 + AT_rich Low_complexity Low_complexity 1 31 0 6 1023 216 132 0 116 chr6 57532183 57532226 -91984811 - ID4_ SINE ID -40 43 6 6 1023 416 297 57 91 chr6 57532269 57532499 -91984538 - MER34A LTR ERV1 0 571 350 6 1023 260 208 67 135 chr6 57532548 57532637 -91984400 - MER57E1 LTR ERV1 -261 111 29 6 1023 626 115 10 0 chr6 57532861 57532875 -91984162 + (TC)n Simple_repeat Simple_repeat 1 14 0 6 1023 1320 73 0 0 chr6 57532875 57533052 -91983985 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 6 1023 626 115 10 0 chr6 57533052 57533141 -91983896 + (TC)n Simple_repeat Simple_repeat 1 90 0 7 1023 432 0 0 0 chr6 57533571 57533619 -91983418 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 7 1023 390 200 0 56 chr6 57533830 57533920 -91983117 + ID_B1 SINE B4 129 213 -11 7 1023 401 297 58 18 chr6 57534006 57534229 -91982808 + LSU-rRNA_Hsa rRNA rRNA 3660 3891 -1144 7 1023 1307 271 42 59 chr6 57534674 57535403 -91981634 - L1_Rod LINE L1 -1298 4549 3833 7 1023 1032 209 64 38 chr6 57535406 57535720 -91981317 - L1_Rod LINE L1 -2356 3491 3170 7 1023 2978 247 46 78 chr6 57535720 57536458 -91980579 - L1_Rod LINE L1 -1194 4653 3979 7 1023 185 0 40 0 chr6 57536458 57536483 -91980554 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1023 1120 65 0 0 chr6 57536483 57536621 -91980416 - B1_Mus1 SINE Alu -9 139 2 7 1023 2978 247 46 78 chr6 57536621 57537218 -91979819 - L1_Rod LINE L1 -1869 3978 3360 7 1023 389 156 0 13 chr6 57537218 57537296 -91979741 + (TA)n Simple_repeat Simple_repeat 1 77 0 7 1023 6471 122 11 11 chr6 57537418 57538788 -91978249 - Lx LINE L1 -5 6649 5290 7 127 34531 65 1 13 chr6 57538802 57544944 -91972093 - L1Md_F2 LINE L1 -5 6577 511 8 1024 982 212 123 36 chr6 57544943 57545301 -91971736 - L1_Rod LINE L1 -2475 3372 2984 7 1024 219 36 0 0 chr6 57545322 57545350 -91971687 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 8 1024 1049 127 13 0 chr6 57545350 57545507 -91971530 - B2_Mm1t SINE B2 -34 159 1 8 1024 1001 239 30 12 chr6 57545519 57545857 -91971180 - L1_Rod LINE L1 -2874 2973 2630 7 1024 1733 264 63 44 chr6 57546000 57547163 -91969874 - L1_Rod LINE L1 -3818 2029 841 7 1024 198 319 204 53 chr6 57547304 57547642 -91969395 - L2 LINE L2 -558 2861 2473 8 1024 584 284 60 9 chr6 57547741 57548035 -91969002 + L1MA9 LINE L1 5814 6135 -54 8 1024 259 279 90 0 chr6 57548176 57548298 -91968739 + L1MA9 LINE L1 6172 6304 -8 8 1024 399 21 0 0 chr6 57548300 57548348 -91968689 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1024 612 288 142 84 chr6 57548767 57549218 -91967819 - MLT1D LTR MaLR 0 505 29 8 1024 275 321 98 8 chr6 57549222 57549354 -91967683 + MER5B DNA MER1_type 35 178 0 8 1024 993 313 29 38 chr6 57550141 57550483 -91966554 - MLT1A0 LTR MaLR -2 363 25 8 1024 3999 73 18 5 chr6 57550518 57551069 -91965968 - L1_Mus3 LINE L1 -5 6633 6076 8 1024 1129 116 0 34 chr6 57551147 57551326 -91965711 + B2_Mm2 SINE B2 2 174 -21 9 1024 661 268 54 0 chr6 57551345 57551513 -91965524 - B3A SINE B2 -21 177 1 9 1024 35 24 0 0 chr6 57552018 57552060 -91964977 + AT_rich Low_complexity Low_complexity 1 42 0 9 1024 221 315 0 0 chr6 57552066 57552120 -91964917 - ID4 SINE ID -19 64 11 9 1024 25 31 0 0 chr6 57552136 57552168 -91964869 + AT_rich Low_complexity Low_complexity 1 32 0 9 1024 797 280 55 113 chr6 57552309 57552619 -91964418 - B4 SINE B4 0 292 1 9 1024 35 41 0 0 chr6 57552641 57552690 -91964347 + AT_rich Low_complexity Low_complexity 1 49 0 9 1024 998 144 193 6 chr6 57552690 57552871 -91964166 - B3 SINE B2 0 216 2 9 1024 243 0 0 0 chr6 57553134 57553161 -91963876 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 9 1024 191 114 29 0 chr6 57553282 57553317 -91963720 + (GAA)n Simple_repeat Simple_repeat 3 38 0 9 1024 28 48 0 0 chr6 57553325 57553367 -91963670 + AT_rich Low_complexity Low_complexity 1 42 0 1 1024 267 146 0 0 chr6 57553389 57553444 -91963593 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1024 701 242 108 0 chr6 57553444 57553601 -91963436 - B3A SINE B2 -24 174 1 1 1024 43 76 0 0 chr6 57553671 57553763 -91963274 + AT_rich Low_complexity Low_complexity 1 92 0 1 1024 25 75 0 0 chr6 57553887 57553940 -91963097 + AT_rich Low_complexity Low_complexity 1 53 0 1 1024 30 27 0 0 chr6 57554317 57554354 -91962683 + AT_rich Low_complexity Low_complexity 1 37 0 1 1024 285 75 0 0 chr6 57554550 57554590 -91962447 + (TATG)n Simple_repeat Simple_repeat 2 41 0 1 1024 365 265 46 23 chr6 57554627 57554821 -91962216 + Lx8 LINE L1 4784 4994 -1152 1 1024 379 290 32 16 chr6 57554825 57554951 -91962086 + B4A SINE B4 4 131 -161 1 1024 1034 304 82 41 chr6 57555175 57556137 -91960900 + Lx8 LINE L1 4927 5973 -1671 1 1024 24 32 0 0 chr6 57556319 57556350 -91960687 + AT_rich Low_complexity Low_complexity 1 31 0 1 1024 677 257 5 103 chr6 57556356 57556459 -91960578 + ID_B1 SINE B4 11 100 -124 1 1024 473 47 16 0 chr6 57556459 57556523 -91960514 + (TGG)n Simple_repeat Simple_repeat 1 65 0 1 1024 677 257 5 103 chr6 57556523 57556623 -91960414 + ID_B1 SINE B4 101 194 -30 1 1024 29 0 0 0 chr6 57556623 57556652 -91960385 + AT_rich Low_complexity Low_complexity 1 29 0 1 1024 1097 64 0 0 chr6 57556652 57556793 -91960244 - B1_Mus2 SINE Alu 0 147 7 1 1024 384 245 0 102 chr6 57556687 57556805 -91960232 - MT2B LTR ERVL -337 264 159 1 1024 234 0 0 0 chr6 57556813 57556839 -91960198 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1024 351 206 13 27 chr6 57557763 57557838 -91959199 - ID4 SINE ID -9 74 1 1 1024 227 258 0 70 chr6 57557956 57558027 -91959010 + ID4_ SINE ID 2 67 -16 1 1024 1464 227 86 33 chr6 57558474 57558849 -91958188 - MTD LTR MaLR -17 402 20 1 1024 200 360 100 21 chr6 57559041 57559231 -91957806 - L2 LINE L2 -2064 1355 1151 1 1024 565 339 37 21 chr6 57559378 57559568 -91957469 + MER20 DNA MER1_type 4 196 -23 1 1024 324 83 0 0 chr6 57560047 57560095 -91956942 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1024 233 167 0 0 chr6 57560098 57560134 -91956903 + B1F SINE Alu 105 140 -9 1 1024 580 281 154 24 chr6 57560176 57560591 -91956446 - L1MB4 LINE L1 -60 6120 5652 1 1024 1167 176 18 13 chr6 57561476 57561700 -91955337 - URR1B DNA MER1_type 0 225 1 1 1024 419 267 9 9 chr6 57562091 57562197 -91954840 - ID_B1 SINE B4 -13 211 106 1 1024 414 0 0 0 chr6 57562257 57562303 -91954734 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1024 243 0 0 0 chr6 57562303 57562329 -91954708 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1024 2411 190 0 12 chr6 57562378 57562804 -91954233 - MTC LTR MaLR 0 421 1 1 1024 414 0 0 0 chr6 57562807 57562853 -91954184 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1024 425 248 26 0 chr6 57562951 57563068 -91953969 + Lx8 LINE L1 6367 6486 -987 1 1024 12978 72 2 2 chr6 57563055 57564847 -91952190 + L1Md_F2 LINE L1 3794 5586 -297 1 1024 7301 82 1 12 chr6 57564848 57565854 -91951183 + L1Md_F2 LINE L1 5588 6582 0 1 1024 1269 321 70 18 chr6 57565856 57566589 -91950448 + Lx8 LINE L1 6461 7231 -242 1 1024 182 116 23 0 chr6 57566923 57566966 -91950071 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1024 432 0 0 0 chr6 57567432 57567480 -91949557 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1024 37 0 0 0 chr6 57568141 57568178 -91948859 + AT_rich Low_complexity Low_complexity 1 37 0 1 1024 207 0 0 0 chr6 57568334 57568357 -91948680 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1024 1177 28 7 7 chr6 57568357 57568495 -91948542 - B1_Mm SINE Alu -7 140 3 1 1024 2678 120 5 2 chr6 57569935 57570345 -91946692 + L1VL4 LINE L1 206 616 -5686 1 1024 3869 123 154 36 chr6 57570345 57571129 -91945908 + RMER17D LTR ERVK 1 877 -12 1 1024 1398 83 0 0 chr6 57571185 57571389 -91945648 + L1VL4 LINE L1 611 814 -5488 1 1024 4465 161 5 4 chr6 57571375 57572189 -91944848 + L1_Mm LINE L1 4994 5808 -75 1 1024 8285 6 0 0 chr6 57572196 57573160 -91943877 - L1Md_T LINE L1 0 6582 5619 1 1024 4916 135 44 19 chr6 57573160 57573999 -91943038 + Lx LINE L1 5790 6649 -5 1 1024 530 312 85 11 chr6 57574200 57574388 -91942649 + B4A SINE B4 68 269 -23 1 1024 486 0 0 0 chr6 57574432 57574486 -91942551 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1024 771 258 45 0 chr6 57574795 57574993 -91942044 - B3 SINE B2 -9 207 1 1 1024 552 277 15 0 chr6 57575022 57575159 -91941878 + ID_B1 SINE B4 84 222 -2 1 1024 345 275 146 9 chr6 57575481 57575591 -91941446 + B1F SINE Alu 18 142 -7 1 1024 36 0 0 0 chr6 57576075 57576111 -91940926 + AT_rich Low_complexity Low_complexity 1 36 0 1 1024 3922 242 92 45 chr6 57576150 57577372 -91939665 - Lx9 LINE L1 -10 7634 6349 1 1024 468 0 0 0 chr6 57577372 57577424 -91939613 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1024 3922 265 81 35 chr6 57577424 57578014 -91939023 - Lx9 LINE L1 -1296 6348 5637 1 1024 789 255 32 30 chr6 57578021 57578226 -91938811 + ORR1D1 LTR MaLR 1 216 -168 1 1024 306 0 0 0 chr6 57578226 57578260 -91938777 + (CATA)n Simple_repeat Simple_repeat 2 35 0 1 1024 542 256 188 52 chr6 57578260 57578342 -91938695 + ORR1D1 LTR MaLR 217 327 -57 1 1024 37302 33 2 7 chr6 57578345 57584523 -91932514 - L1Md_T LINE L1 0 6582 441 1 1024 902 185 0 6 chr6 57584593 57584751 -91932286 + URR1B DNA MER1_type 1 157 -68 1 1024 603 115 52 0 chr6 57584965 57585061 -91931976 + URR1B DNA MER1_type 125 225 0 1 1024 3067 230 48 77 chr6 57585061 57585400 -91931637 - Lx9 LINE L1 -262 5585 5256 1 1024 3431 182 28 12 chr6 57585400 57586045 -91930992 - Lx3C LINE L1 -2 6974 6320 1 1024 3067 230 48 77 chr6 57586045 57587038 -91929999 - Lx9 LINE L1 -592 5255 4292 1 1024 298 259 174 40 chr6 57587123 57587272 -91929765 - RMER21B LTR ERV1 -333 509 341 1 1024 183 42 0 0 chr6 57587272 57587296 -91929741 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1024 1139 63 0 0 chr6 57587302 57587444 -91929593 - B1_Mus2 SINE Alu -5 142 1 1 1024 443 257 174 16 chr6 57587633 57587823 -91929214 - RMER21B LTR ERV1 -276 566 347 1 1024 773 244 54 51 chr6 57587972 57588445 -91928592 - Lx9 LINE L1 -2422 3425 3123 1 1024 243 268 109 34 chr6 57588445 57588592 -91928445 - Lx9 LINE L1 -2867 2980 2823 1 1024 3790 191 42 17 chr6 57588592 57589512 -91927525 - MYSERV6-int LTR ERVK -251 8708 7766 1 1024 595 275 50 11 chr6 57589514 57589694 -91927343 - RMER4A LTR ERVK -29 437 251 1 1024 1372 265 41 106 chr6 57589708 57590714 -91926323 - MYSERV-int LTR ERVK -1435 5115 4209 1 1024 704 301 20 59 chr6 57590849 57591241 -91925796 - MYSERV-int LTR ERVK -2389 4161 3785 1 1024 534 115 159 0 chr6 57592088 57592175 -91924862 + B2_Mm1t SINE B2 57 153 -40 1 1024 257 0 0 29 chr6 57592175 57592209 -91924828 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 1024 534 115 159 0 chr6 57592209 57592234 -91924803 + B2_Mm1t SINE B2 154 186 -7 1 1024 343 291 23 0 chr6 57592540 57592626 -91924411 + ID_B1 SINE B4 84 171 -53 1 1024 432 37 0 0 chr6 57592644 57592698 -91924339 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1024 235 231 0 0 chr6 57592772 57592811 -91924226 + ID_B1 SINE B4 177 215 -9 1 1024 537 58 0 0 chr6 57592835 57592904 -91924133 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1024 249 274 113 41 chr6 57593079 57593300 -91923737 - L1M5 LINE L1 -748 5398 5162 1 1024 357 145 0 0 chr6 57593313 57593375 -91923662 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 1 1024 312 231 0 93 chr6 57593384 57593470 -91923567 - ID4_ SINE ID -4 79 2 1 1024 446 311 50 30 chr6 57593669 57593871 -91923166 - ID_B1 SINE B4 -16 208 3 1 1024 323 258 104 8 chr6 57593910 57594035 -91923002 - L1M5 LINE L1 -1828 4318 4182 1 1024 1046 208 59 0 chr6 57594223 57594425 -91922612 - B3 SINE B2 0 216 3 1 1024 4351 49 2 0 chr6 57594582 57595113 -91921924 - L1Md_T LINE L1 0 6582 6051 1 1024 28 0 0 0 chr6 57595287 57595315 -91921722 + AT_rich Low_complexity Low_complexity 1 28 0 1 1024 29 0 0 0 chr6 57595390 57595419 -91921618 + AT_rich Low_complexity Low_complexity 1 29 0 1 1024 668 197 61 0 chr6 57595791 57595923 -91921114 - B1_Mur4 SINE Alu -8 142 3 1 1024 455 301 15 171 chr6 57596403 57596557 -91920480 + ID_B1 SINE B4 2 157 -67 1 1024 806 231 9 70 chr6 57596557 57596785 -91920252 + B3 SINE B2 2 215 -1 1 1024 455 301 15 171 chr6 57596785 57596894 -91920143 + ID_B1 SINE B4 158 224 0 1 1024 280 301 109 64 chr6 57597414 57597570 -91919467 - MLT1A1 LTR MaLR -240 168 6 1 1024 34 0 0 0 chr6 57597849 57597883 -91919154 + AT_rich Low_complexity Low_complexity 1 34 0 1 1024 242 242 115 10 chr6 57597883 57597979 -91919058 - Lx2 LINE L1 -20 6977 6872 1 1024 273 284 14 5 chr6 57598170 57598260 -91918777 - Lx8 LINE L1 -454 7019 6929 1 1024 1612 307 21 16 chr6 57598262 57598824 -91918213 + Lx8 LINE L1 6389 6953 -520 1 1024 259 241 45 0 chr6 57598910 57599043 -91917994 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 1024 1149 61 0 13 chr6 57599183 57599332 -91917705 + B1_Mus1 SINE Alu 2 148 0 1 1024 348 245 172 0 chr6 57599413 57599576 -91917461 - LTR80B LTR ERVL -229 355 165 1 1024 1340 206 67 50 chr6 57599596 57599999 -91917038 - RMER17C LTR ERVK 0 410 1 1 1024 263 286 0 0 chr6 57601487 57601536 -91915501 + B1F SINE Alu 1 49 -100 1 1024 301 225 0 130 chr6 57601622 57601714 -91915323 - ID_B1 SINE B4 -2 222 143 1 1024 642 323 0 6 chr6 57601731 57601896 -91915141 - RSINE1 SINE B4 0 165 2 1 1024 258 239 113 0 chr6 57601897 57601968 -91915069 - ID_B1 SINE B4 -68 156 78 1 1024 384 40 0 0 chr6 57602186 57602236 -91914801 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1024 310 215 45 15 chr6 57602488 57602554 -91914483 - ID SINE ID -153 71 4 1 1024 254 343 28 0 chr6 57602771 57602879 -91914158 - MLT1H LTR MaLR -429 120 10 1 1024 265 254 17 0 chr6 57603531 57603590 -91913447 + ID4_ SINE ID 20 79 -4 1 1024 249 292 62 0 chr6 57603533 57603598 -91913439 + ID_B1 SINE B4 23 91 -133 1 1024 1329 101 11 0 chr6 57603717 57603906 -91913131 - B2_Mm2 SINE B2 -3 192 2 1 1024 446 240 40 10 chr6 57604847 57604948 -91912089 - PB1D10 SINE Alu -2 115 12 1 1024 222 62 0 0 chr6 57605008 57605040 -91911997 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1024 21 0 0 0 chr6 57605040 57605061 -91911976 + AT_rich Low_complexity Low_complexity 1 21 0 1 1024 507 70 0 0 chr6 57605977 57606048 -91910989 - L1Md_F2 LINE L1 -526 5357 5287 1 1024 1735 46 0 0 chr6 57606039 57606256 -91910781 + L1Md_F2 LINE L1 5370 5586 -297 1 1024 7678 53 19 5 chr6 57606256 57607227 -91909810 + L1Md_F2 LINE L1 5587 6570 -12 1 1024 236 167 0 0 chr6 57607229 57607265 -91909772 + ID_B1 SINE B4 143 178 -46 1 1024 3929 26 0 0 chr6 57607266 57607721 -91909316 + L1Md_A LINE L1 6128 6582 0 2 1024 236 294 11 43 chr6 57608442 57608627 -91908410 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1024 537 30 0 0 chr6 57609782 57609849 -91907188 + (TATG)n Simple_repeat Simple_repeat 4 70 0 2 1024 26 74 0 0 chr6 57609937 57609991 -91907046 + AT_rich Low_complexity Low_complexity 1 54 0 2 1024 356 253 51 0 chr6 57610548 57610627 -91906410 + MER63B DNA AcHobo 313 395 -41 2 1024 312 269 93 72 chr6 57610869 57611172 -91905865 - MLT1A1 LTR MaLR -5 403 70 2 1024 338 308 61 34 chr6 57611556 57611704 -91905333 + Tigger5 DNA MER2_type 21 172 -2234 2 1024 255 286 13 13 chr6 57611691 57611769 -91905268 + Tigger5 DNA MER2_type 2269 2346 -60 2 1024 22 0 0 0 chr6 57613042 57613064 -91903973 + AT_rich Low_complexity Low_complexity 1 22 0 2 1024 21 36 0 0 chr6 57613162 57613190 -91903847 + AT_rich Low_complexity Low_complexity 1 28 0 2 1024 985 207 14 9 chr6 57613202 57613412 -91903625 + B3 SINE B2 2 212 -4 2 1024 317 266 160 44 chr6 57614120 57614516 -91902521 + L1MC LINE L1 3609 4059 -2087 2 1024 26 30 0 0 chr6 57614787 57614820 -91902217 + AT_rich Low_complexity Low_complexity 1 33 0 2 1024 333 216 22 0 chr6 57614916 57615050 -91901987 + (TG)n Simple_repeat Simple_repeat 2 138 0 2 1024 246 326 33 58 chr6 57615175 57615285 -91901752 + L1MC LINE L1 4602 4711 -1435 2 1024 1591 217 30 27 chr6 57615285 57615654 -91901383 + ORR1D2 LTR MaLR 1 370 0 2 1024 246 326 33 58 chr6 57615654 57615784 -91901253 + L1MC LINE L1 4712 4836 -1310 2 1024 906 115 0 0 chr6 57616314 57616479 -91900558 + (TC)n Simple_repeat Simple_repeat 2 166 0 2 1024 227 250 17 0 chr6 57616479 57616539 -91900498 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1024 288 293 50 20 chr6 57616541 57616642 -91900395 - B4A SINE B4 0 292 189 2 1024 336 306 10 48 chr6 57616663 57616766 -91900271 - B4A SINE B4 -192 100 2 2 1024 448 244 32 16 chr6 57616876 57617001 -91900036 - PB1 SINE Alu 0 127 1 2 1024 305 270 59 34 chr6 57617001 57617120 -91899917 - L1MEg LINE L1 -4822 1262 1141 2 1024 33557 69 2 4 chr6 57617417 57623671 -91893366 - L1Md_F2 LINE L1 0 6585 244 2 1024 21 0 0 0 chr6 57623767 57623788 -91893249 + AT_rich Low_complexity Low_complexity 1 21 0 2 1024 947 263 24 0 chr6 57623882 57624087 -91892950 + B3 SINE B2 6 215 -1 2 1024 472 331 294 7 chr6 57624764 57625062 -91891975 + Tigger7 DNA MER2_type 20 402 -2089 2 1024 2811 28 0 0 chr6 57625294 57625616 -91891421 + RLTRETN_Mm LTR ERVK 1 322 0 2 1024 1968 206 108 5 chr6 57625807 57626384 -91890653 + L1_Mur3 LINE L1 2042 2677 -3203 2 1024 656 200 46 23 chr6 57626373 57626547 -91890490 + Lx7 LINE L1 6156 6333 -1363 2 1024 1687 203 63 46 chr6 57626547 57626914 -91890123 + ORR1C2 LTR MaLR 4 376 -8 2 1024 3245 231 104 34 chr6 57626915 57627907 -91889130 + Lx7 LINE L1 6322 7382 -314 2 1024 611 228 158 12 chr6 57627951 57628204 -91888833 - L1M4b LINE L1 -4494 2840 2551 2 1024 360 318 160 10 chr6 57628220 57628420 -91888617 - L1M4b LINE L1 -6989 345 116 2 1024 387 0 0 0 chr6 57628502 57628545 -91888492 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 1024 618 228 63 0 chr6 57628545 57628672 -91888365 - B1_Mm SINE Alu -12 135 1 2 1024 198 0 0 0 chr6 57628680 57628702 -91888335 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2 1024 342 0 0 0 chr6 57628702 57628740 -91888297 + (TAG)n Simple_repeat Simple_repeat 1 38 0 2 1024 3955 113 22 6 chr6 57628744 57629375 -91887662 - L1_Mus4 LINE L1 -10 6626 5986 2 1024 16890 152 15 28 chr6 57629375 57630956 -91886081 - L1VL4 LINE L1 -1302 4581 2999 2 1024 210 37 0 0 chr6 57630956 57630983 -91886054 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1024 16890 152 15 28 chr6 57630983 57631611 -91885426 - L1VL4 LINE L1 -2885 2998 2396 2 1024 1676 16 0 10 chr6 57631611 57631805 -91885232 - B2_Mm1t SINE B2 0 193 2 2 1024 16890 160 20 36 chr6 57631805 57633639 -91883398 - L1VL4 LINE L1 -3488 2395 598 2 1024 561 274 98 84 chr6 57633746 57634033 -91883004 - B4A SINE B4 0 292 2 2 1024 283 232 157 29 chr6 57634362 57634464 -91882573 + PB1D10 SINE Alu 1 115 -2 2 1024 434 323 87 53 chr6 57634464 57634670 -91882367 + B3 SINE B2 1 213 -3 2 1024 200 91 21 83 chr6 57635210 57635258 -91881779 + T-rich Low_complexity Low_complexity 5 49 0 2 1024 351 0 0 0 chr6 57635278 57635317 -91881720 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1024 718 131 21 78 chr6 57635587 57635728 -91881309 - URR1B DNA MER1_type 0 225 93 2 1024 1068 136 40 0 chr6 57636942 57637118 -91879919 + MTC LTR MaLR 1 183 -238 2 1024 1317 128 87 35 chr6 57637346 57637625 -91879412 + MTC LTR MaLR 133 421 0 2 1024 237 167 63 48 chr6 57637816 57637879 -91879158 - ID_B1 SINE B4 -57 167 104 2 1024 442 320 41 0 chr6 57638392 57638539 -91878498 + RSINE1 SINE B4 3 155 -10 2 1024 270 0 0 0 chr6 57640080 57640110 -91876927 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1024 286 95 0 0 chr6 57640308 57640350 -91876687 + RLTR6-int LTR ERV1 7737 7778 0 2 1024 445 70 349 0 chr6 57640350 57640436 -91876601 + LTRIS5 LTR ERV1 1 116 -331 2 1024 1136 160 26 22 chr6 57640460 57640690 -91876347 + LTRIS5 LTR ERV1 217 447 0 2 1024 1114 55 14 0 chr6 57640769 57640914 -91876123 + B1_Mus2 SINE Alu 1 147 0 2 1024 245 63 15 73 chr6 57640915 57640983 -91876054 + A-rich Low_complexity Low_complexity 3 66 0 2 1024 466 294 7 7 chr6 57640991 57641128 -91875909 + B1F SINE Alu 1 137 -12 2 1024 183 100 0 0 chr6 57641209 57641239 -91875798 + (TCTCTG)n Simple_repeat Simple_repeat 3 32 0 2 1024 243 0 0 0 chr6 57641239 57641266 -91875771 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1024 238 289 0 13 chr6 57641289 57641344 -91875693 + polypurine Low_complexity Low_complexity 3 56 0 2 1024 660 26 0 0 chr6 57641344 57641422 -91875615 + (GA)n Simple_repeat Simple_repeat 2 79 0 2 1024 238 289 0 13 chr6 57641422 57641443 -91875594 + polypurine Low_complexity Low_complexity 57 77 0 2 1024 216 0 0 0 chr6 57641483 57641507 -91875530 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 1024 221 109 0 21 chr6 57642074 57642121 -91874916 + (CCCCCG)n Simple_repeat Simple_repeat 1 46 0 2 1024 1041 148 38 21 chr6 57642549 57642735 -91874302 + URR1B DNA MER1_type 26 214 -11 2 1024 197 33 33 0 chr6 57643399 57643429 -91873608 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 2 1024 659 278 30 65 chr6 57643868 57644068 -91872969 - B3A SINE B2 -5 193 1 2 1024 3880 116 176 55 chr6 57645226 57646034 -91871003 + RMER17A2 LTR ERVK 1 906 0 2 1024 950 70 132 0 chr6 57646296 57646425 -91870612 + B1_Mm SINE Alu 2 147 0 2 1024 1263 111 0 6 chr6 57646525 57646706 -91870331 + ORR1A3 LTR MaLR 147 326 0 2 1024 22 0 0 0 chr6 57647734 57647756 -91869281 + AT_rich Low_complexity Low_complexity 1 22 0 2 1024 836 314 95 61 chr6 57648338 57648928 -91868109 + Lx8 LINE L1 5998 6607 -866 2 1024 3179 48 10 5 chr6 57648928 57649322 -91867715 + MTA_Mm LTR MaLR 1 396 0 2 1024 1056 189 24 36 chr6 57649330 57649533 -91867504 - RMER10B LTR ERVL 0 398 196 2 1024 548 0 30 0 chr6 57649533 57649600 -91867437 + (GGAA)n Simple_repeat Simple_repeat 2 70 0 2 1024 1056 189 24 36 chr6 57649600 57649643 -91867394 - RMER10B LTR ERVL -203 195 155 2 1024 313 277 86 21 chr6 57649662 57649802 -91867235 + Lx8 LINE L1 7265 7413 -60 2 1024 387 0 0 0 chr6 57651507 57651550 -91865487 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1024 393 39 0 0 chr6 57651550 57651600 -91865437 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1024 22 70 0 0 chr6 57652318 57652361 -91864676 + AT_rich Low_complexity Low_complexity 1 43 0 2 1024 340 335 67 57 chr6 57653828 57654142 -91862895 - Lx8 LINE L1 -236 7237 6921 2 1024 531 169 61 25 chr6 57654146 57654220 -91862817 - Lx3C LINE L1 -1329 5647 5572 2 1024 512 227 0 52 chr6 57654220 57654336 -91862701 - PB1D9 SINE Alu -9 111 2 2 1024 531 290 234 55 chr6 57654336 57654480 -91862557 - Lx3C LINE L1 -309 5571 5440 2 1024 3346 55 21 0 chr6 57654480 57654902 -91862135 - L1_Mus1 LINE L1 -1 6566 6136 2 1024 556 290 233 55 chr6 57654902 57655313 -91861724 - Lx3C LINE L1 -441 5439 4901 2 1024 1500 283 70 56 chr6 57655477 57656395 -91860642 - Lx3C LINE L1 -1217 4663 3724 2 1024 1201 93 21 27 chr6 57656395 57656582 -91860455 - B2_Mm2 SINE B2 -9 186 1 2 1024 1500 283 70 56 chr6 57656582 57656674 -91860363 - Lx3C LINE L1 -2157 3723 3639 2 1024 487 294 42 21 chr6 57657120 57657311 -91859726 - LTR41 LTR ERVL -11 757 563 2 1024 508 210 83 89 chr6 57657330 57657487 -91859550 - MLT1F1 LTR MaLR -1 568 413 2 1024 342 0 0 0 chr6 57657589 57657627 -91859410 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1024 243 0 0 0 chr6 57657627 57657653 -91859384 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 1024 618 177 117 63 chr6 57657692 57657897 -91859140 + Lx7 LINE L1 7480 7695 -1 2 1024 2503 162 17 17 chr6 57657879 57658384 -91858653 + L1_Mur3 LINE L1 5262 5776 -380 2 1024 1109 227 135 10 chr6 57658912 57659201 -91857836 + MTD LTR MaLR 1 325 -94 2 1024 2012 237 59 81 chr6 57659256 57660085 -91856952 + MTC-int LTR MaLR 1 1205 -375 2 1024 261 0 0 0 chr6 57660370 57660399 -91856638 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1024 923 198 78 11 chr6 57660400 57660674 -91856363 + L1_Rod LINE L1 4986 5316 -564 2 1024 2132 189 4 32 chr6 57660670 57661144 -91855893 - L1_Mur3 LINE L1 -966 4914 4454 2 1024 454 336 27 20 chr6 57662224 57662370 -91854667 - ID_B1 SINE B4 0 224 78 2 1024 672 279 92 42 chr6 57662392 57662593 -91854444 - MTEb LTR MaLR -103 276 68 2 1024 288 0 0 0 chr6 57662593 57662625 -91854412 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1024 672 279 92 42 chr6 57662625 57662685 -91854352 - MTEb LTR MaLR -312 67 3 2 1024 21 0 0 0 chr6 57663359 57663380 -91853657 + AT_rich Low_complexity Low_complexity 1 21 0 2 1024 26 0 0 0 chr6 57663461 57663487 -91853550 + AT_rich Low_complexity Low_complexity 1 26 0 2 1024 1119 236 12 33 chr6 57664368 57664697 -91852340 - L1_Rod LINE L1 -3514 2333 2012 2 1024 2462 253 54 10 chr6 57664717 57665325 -91851712 - ORR1D1-int LTR MaLR -686 684 50 2 1024 1378 131 56 0 chr6 57665325 57665539 -91851498 - URR1A DNA MER1_type 0 226 1 2 1024 322 206 14 22 chr6 57665539 57665604 -91851433 - ORR1D1-int LTR MaLR -1729 63 1 2 1024 1572 216 32 27 chr6 57665604 57665976 -91851061 - ORR1D1 LTR MaLR 0 374 1 2 1024 23613 162 38 30 chr6 57666168 57671095 -91845942 - L1_Mur3 LINE L1 -28 5849 889 2 1024 211 226 0 19 chr6 57671160 57671214 -91845823 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 2 1025 357 298 112 32 chr6 57671737 57671862 -91845175 - ID_B1 SINE B4 -10 214 80 2 1025 210 136 0 0 chr6 57673744 57673788 -91843249 + (T)n Simple_repeat Simple_repeat 1 44 0 2 1025 885 137 0 14 chr6 57675764 57675905 -91841132 + B1_Mm SINE Alu 1 139 -8 3 1025 261 162 0 0 chr6 57675915 57675983 -91841054 + A-rich Low_complexity Low_complexity 1 68 0 3 1025 271 299 236 62 chr6 57676767 57676992 -91840045 - B4A SINE B4 -27 265 2 3 1025 584 311 95 0 chr6 57677068 57677258 -91839779 - B4 SINE B4 -5 287 80 3 1025 598 193 171 39 chr6 57677280 57677485 -91839552 - Lx9 LINE L1 -12 7632 7401 3 1025 251 120 100 0 chr6 57677709 57677759 -91839278 - Lx9 LINE L1 -220 7424 7370 3 1025 676 191 79 29 chr6 57677793 57677933 -91839104 + B1_Mur1 SINE Alu 1 147 -2 3 1025 509 220 129 9 chr6 57677946 57678103 -91838934 + L1_Rod LINE L1 4012 4186 -1661 3 1025 234 203 51 0 chr6 57678183 57678301 -91838736 + (TAGA)n Simple_repeat Simple_repeat 4 127 0 3 1025 423 349 45 51 chr6 57678301 57678615 -91838422 + RLTR25B LTR ERVK 1 312 -716 3 1025 270 326 73 46 chr6 57679473 57679624 -91837413 + RLTR25B LTR ERVK 937 1091 -12 3 1025 474 277 107 43 chr6 57679647 57679903 -91837134 - ORR1D2-int LTR MaLR -1304 276 20 3 1025 1223 282 27 27 chr6 57680310 57680678 -91836359 - ORR1D2 LTR MaLR -2 368 1 3 1025 1033 299 119 64 chr6 57680679 57681257 -91835780 + Lx9 LINE L1 6813 7422 -222 3 1025 648 173 75 75 chr6 57681248 57681435 -91835602 - L1_Rod LINE L1 -1932 3915 3729 3 1025 1985 255 14 19 chr6 57681446 57682022 -91835015 - L1_Rod LINE L1 -6479 693 121 3 1025 195 219 0 0 chr6 57682553 57682585 -91834452 + MIR SINE MIR 20 51 -211 3 1025 285 276 126 66 chr6 57682626 57682793 -91834244 + MIRb SINE MIR 24 200 -68 3 1025 405 0 0 0 chr6 57683631 57683676 -91833361 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1025 644 272 31 6 chr6 57683685 57683844 -91833193 - B3A SINE B2 -34 164 2 3 1025 786 22 0 0 chr6 57683851 57683943 -91833094 + (TTC)n Simple_repeat Simple_repeat 2 93 0 3 1025 26 74 0 0 chr6 57684601 57684655 -91832382 + AT_rich Low_complexity Low_complexity 1 54 0 3 1025 847 217 0 0 chr6 57684700 57684843 -91832194 - B1_Mur2 SINE Alu -5 144 2 3 1025 417 39 0 0 chr6 57684856 57684907 -91832130 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1025 360 275 45 9 chr6 57685172 57685282 -91831755 + PB1D9 SINE Alu 4 117 -3 3 1025 2352 44 11 0 chr6 57685407 57685681 -91831356 - L1Md_F2 LINE L1 0 6582 6306 3 1025 248 332 100 9 chr6 57686032 57686242 -91830795 + L1ME2z LINE L1 5730 5958 -206 3 1025 325 261 54 0 chr6 57686321 57686432 -91830605 + L1ME2z LINE L1 6062 6178 -266 3 1025 237 321 0 28 chr6 57686737 57686834 -91830203 - ID2 SINE ID -55 97 9 3 1025 518 323 65 72 chr6 57686931 57687208 -91829829 + B4 SINE B4 7 281 -11 3 1025 585 0 0 0 chr6 57687230 57687295 -91829742 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1025 209 0 98 0 chr6 57687309 57687350 -91829687 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3 1025 1229 69 0 0 chr6 57687354 57687499 -91829538 - B1_Mus2 SINE Alu -1 146 2 3 1025 22 0 0 0 chr6 57688647 57688669 -91828368 + AT_rich Low_complexity Low_complexity 1 22 0 3 1025 1550 205 149 0 chr6 57689882 57690204 -91826833 - ORR1D1 LTR MaLR 0 374 5 3 1025 487 170 120 0 chr6 57690355 57690455 -91826582 - ORR1D1 LTR MaLR -41 333 222 3 1025 2653 136 71 87 chr6 57690745 57691231 -91825806 - RLTR13D1 LTR ERVK 0 806 327 3 1025 5880 60 1 3 chr6 57691231 57691932 -91825105 - L1Md_F2 LINE L1 0 6582 5883 3 1025 2653 254 86 106 chr6 57691932 57692358 -91824679 - RLTR13D1 LTR ERVK -494 399 1 3 1025 2279 183 98 11 chr6 57692872 57693320 -91823717 - MERVL_2A-int LTR ERVL -809 4952 4466 3 1025 1506 264 9 86 chr6 57693346 57693588 -91823449 - RMER1B Other Other -321 745 514 3 1025 204 67 0 0 chr6 57693588 57693618 -91823419 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 3 1025 1506 264 9 86 chr6 57693618 57693639 -91823398 - RMER1B Other Other -553 513 513 3 1025 1200 76 7 0 chr6 57693639 57693784 -91823253 - B1_Mm SINE Alu 0 147 2 3 1025 1912 279 12 28 chr6 57693784 57694453 -91822584 - RMER1A Other Other -553 513 1 3 1025 220 244 0 0 chr6 57695166 57695211 -91821826 + T-rich Low_complexity Low_complexity 1 45 0 3 1025 482 206 0 30 chr6 57695397 57695497 -91821540 + B1_Mur4 SINE Alu 54 150 0 3 1025 2128 179 13 21 chr6 57696718 57697095 -91819942 - ORR1C1 LTR MaLR 0 378 5 3 1025 305 319 122 20 chr6 57697102 57697249 -91819788 + RSINE1 SINE B4 2 163 -2 3 1025 2118 140 72 12 chr6 57698158 57698504 -91818533 + ORR1B2 LTR MaLR 1 367 0 3 1025 6789 150 154 70 chr6 57698504 57699133 -91817904 + ORR1B2-int LTR MaLR 1 649 -860 3 1025 427 270 102 16 chr6 57699133 57699261 -91817776 + B1_Mur3 SINE Alu 3 141 -8 3 1025 6789 150 154 70 chr6 57699261 57699684 -91817353 + ORR1B2-int LTR MaLR 650 1164 -345 3 1025 1717 16 0 20 chr6 57699684 57699880 -91817157 - B2_Mm1a SINE B2 0 193 2 3 1025 6789 150 154 70 chr6 57699880 57700219 -91816818 + ORR1B2-int LTR MaLR 1165 1509 0 3 1025 1825 194 20 20 chr6 57700219 57700577 -91816460 + ORR1B2 LTR MaLR 1 358 -9 3 1025 302 371 8 8 chr6 57700982 57701099 -91815938 - PB1 SINE Alu -8 119 3 3 1025 325 143 239 14 chr6 57706125 57706196 -91810841 - RMER5 LTR ERV1 0 534 448 3 1025 460 304 22 7 chr6 57706669 57706808 -91810229 + B1F SINE Alu 2 142 -7 3 1025 232 151 0 36 chr6 57707297 57707352 -91809685 + A-rich Low_complexity Low_complexity 3 55 0 3 1025 337 91 0 0 chr6 57707619 57707663 -91809374 - MTC LTR MaLR 0 421 378 3 1025 2238 108 0 0 chr6 57707663 57707969 -91809068 - L1_Mus3 LINE L1 -424 6214 5909 3 1025 2764 64 78 3 chr6 57707969 57708329 -91808708 + L1_Mus3 LINE L1 6243 6629 -9 3 1025 2528 149 5 0 chr6 57708347 57708736 -91808301 - MTC LTR MaLR -30 391 1 3 1025 444 326 58 18 chr6 57708756 57708852 -91808185 - MER2 DNA MER2_type -27 318 215 3 1025 420 20 0 0 chr6 57708852 57708901 -91808136 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1025 444 326 58 18 chr6 57708901 57709029 -91808008 - MER2 DNA MER2_type -131 214 86 3 1025 232 320 0 81 chr6 57710242 57710402 -91806635 - L1MA9 LINE L1 -141 6171 6025 3 1025 4630 170 34 94 chr6 57711053 57712217 -91804820 + RLTR22_Mur LTR ERVK 654 1846 -2 3 1025 1753 214 83 18 chr6 57713668 57714054 -91802983 + MTD LTR MaLR 1 411 -8 3 1025 631 122 155 9 chr6 57714304 57714420 -91802617 + B1_Mus1 SINE Alu 9 141 -7 3 1025 258 260 98 45 chr6 57714314 57714447 -91802590 - YREP_Mm Unknown Unknown -1520 292 153 3 1025 305 167 13 0 chr6 57714660 57714738 -91802299 + CT-rich Low_complexity Low_complexity 2 80 0 3 1025 210 91 0 0 chr6 57714743 57714776 -91802261 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 3 1025 454 290 27 27 chr6 57714854 57715003 -91802034 - B1F SINE Alu 0 149 1 3 1025 787 198 50 21 chr6 57715800 57716005 -91801032 + Lx4B LINE L1 6854 7041 -17 3 1025 1517 268 135 22 chr6 57716073 57716570 -91800467 + Lx5 LINE L1 6480 7032 -18 3 1025 575 176 8 0 chr6 57716604 57716729 -91800308 + GA-rich Low_complexity Low_complexity 2 127 0 3 1025 804 173 240 11 chr6 57716877 57717052 -91799985 + B3 SINE B2 2 216 0 3 1025 450 0 0 0 chr6 57717824 57717874 -91799163 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1025 1251 29 0 0 chr6 57717876 57718014 -91799023 + B1_Mm SINE Alu 1 138 -9 3 1025 270 0 0 0 chr6 57718014 57718044 -91798993 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1025 1557 195 97 9 chr6 57718599 57718941 -91798096 + RMER5 LTR ERV1 1 372 -162 3 1025 1487 149 18 0 chr6 57719377 57719599 -91797438 + URR1A DNA MER1_type 1 226 0 3 1025 244 299 0 20 chr6 57720284 57720383 -91796654 - CYRA11_Mm Unknown Y-chromosome -282 335 239 3 1025 473 130 9 57 chr6 57720304 57720410 -91796627 + URR1A DNA MER1_type 83 183 -43 3 1025 1006 185 133 9 chr6 57720979 57721197 -91795840 - ORR1D1 LTR MaLR -129 245 1 3 1025 249 83 0 0 chr6 57721446 57721482 -91795555 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1025 256 246 0 0 chr6 57721723 57721784 -91795253 + RLTR42-int LTR ERVK 1459 1519 -4003 3 1025 383 164 0 0 chr6 57721891 57721952 -91795085 + RLTR42-int LTR ERVK 1547 1607 -3915 3 1025 1814 188 72 46 chr6 57722214 57722604 -91794433 + RLTR20B3 LTR ERVK 178 577 0 3 1025 221 287 85 3 chr6 57725093 57725180 -91791857 + MIRc SINE MIR 64 155 -53 3 1025 631 335 61 58 chr6 57725740 57726082 -91790955 + MLT1E1 LTR MaLR 302 644 -10 3 1025 802 256 153 89 chr6 57726263 57726385 -91790652 + MTEa LTR MaLR 3 138 -241 3 1025 2573 95 3 0 chr6 57726385 57726711 -91790326 + ORR1A2 LTR MaLR 1 327 0 3 1025 802 256 153 89 chr6 57726711 57726935 -91790102 + MTEa LTR MaLR 139 371 -8 3 1025 3363 56 8 2 chr6 57727490 57727884 -91789153 - MTA_Mm LTR MaLR 0 396 1 3 1025 486 233 107 50 chr6 57729931 57730071 -91786966 + B1_Mur2 SINE Alu 2 149 0 3 1025 378 320 140 54 chr6 57730132 57730446 -91786591 + MLT1A LTR MaLR 21 361 -13 3 1025 367 339 17 0 chr6 57730676 57730791 -91786246 + PB1 SINE Alu 1 117 -10 3 1025 1637 191 198 54 chr6 57731168 57731633 -91785404 - RMER5 LTR ERV1 -2 532 1 3 1025 198 364 123 19 chr6 57731668 57731822 -91785215 - L3 LINE CR1 -702 3787 3618 3 1025 181 333 155 72 chr6 57732320 57732501 -91784536 - L3 LINE CR1 -876 3613 3418 3 1025 180 111 0 0 chr6 57733270 57733297 -91783740 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1025 367 162 29 0 chr6 57733357 57733425 -91783612 - L1MA10 LINE L1 -15 6319 6250 3 1025 1135 253 100 12 chr6 57734718 57735058 -91781979 - ORR1D2 LTR MaLR 0 370 1 3 1025 262 326 219 27 chr6 57735410 57735593 -91781444 + RMER15 LTR ERVL 345 562 -13 3 1025 2914 183 119 14 chr6 57736480 57737202 -91779835 + RLTR40 LTR ERVK 1 798 -19 3 1025 287 320 92 5 chr6 57737263 57737470 -91779567 - Lx9 LINE L1 -1 7643 7419 3 1025 3410 300 58 31 chr6 57737482 57739195 -91777842 - Lx9 LINE L1 -172 7472 5589 3 1025 286 280 21 0 chr6 57739230 57739323 -91777714 - Lx9 LINE L1 -1198 4649 4555 3 1025 323 278 62 56 chr6 57739321 57739500 -91777537 - Lx9 LINE L1 -2183 3664 3485 3 1025 1806 162 30 30 chr6 57739515 57739884 -91777153 - RMER6C LTR ERVK 0 690 322 3 1025 313 278 0 14 chr6 57740333 57740406 -91776631 - tRNA-Ala-GCY_ tRNA tRNA -1 74 3 3 1025 2847 120 16 2 chr6 57741313 57741739 -91775298 + Lx2B LINE L1 6565 6996 -4 3 1025 2748 34 3 42 chr6 57742946 57743281 -91773756 + RLTRETN_Mm LTR ERVK 1 322 0 3 1025 352 302 30 30 chr6 57743297 57743430 -91773607 - B1F SINE Alu 0 149 17 3 1025 2157 280 85 49 chr6 57743430 57744220 -91772817 + Lx8 LINE L1 6181 6998 -475 3 1025 225 275 0 91 chr6 57744222 57744233 -91772804 + RLTR25B LTR ERVK 428 451 -577 4 1025 749 74 19 0 chr6 57744251 57744359 -91772678 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 4 1025 255 164 0 153 chr6 57744359 57744412 -91772625 + MT2B LTR ERVL 213 257 -344 4 1025 512 181 0 54 chr6 57744417 57744444 -91772593 + B1_Mus2 SINE Alu 50 134 -13 4 1025 225 0 0 0 chr6 57744444 57744469 -91772568 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4 1025 512 181 0 54 chr6 57744469 57744483 -91772554 + B1_Mus2 SINE Alu 135 146 -1 4 1025 561 264 171 4 chr6 57744545 57744796 -91772241 + Lx8 LINE L1 7175 7467 -6 3 1025 1086 110 7 0 chr6 57744828 57744974 -91772063 + B1_Mus1 SINE Alu 2 148 0 4 1025 763 247 78 35 chr6 57745203 57745434 -91771603 - RMER5 LTR ERV1 0 534 294 4 1025 23 0 0 0 chr6 57745695 57745718 -91771319 + AT_rich Low_complexity Low_complexity 1 23 0 4 1025 430 229 0 0 chr6 57745747 57745830 -91771207 - B1_Mur4 SINE Alu -22 128 46 4 1025 245 234 16 0 chr6 57745944 57746008 -91771029 - L1M4 LINE L1 -412 5766 5702 4 1025 651 189 195 7 chr6 57746376 57746530 -91770507 + B3 SINE B2 4 186 -30 4 1025 518 184 211 0 chr6 57746544 57746653 -91770384 + B1_Mur2 SINE Alu 9 140 -9 4 1025 180 111 0 0 chr6 57747315 57747342 -91769695 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1025 276 321 23 23 chr6 57747354 57747440 -91769597 - PB1 SINE Alu -41 86 1 4 1025 264 323 74 15 chr6 57747444 57747579 -91769458 - L1M4 LINE L1 -579 5605 5463 4 1025 432 0 0 0 chr6 57747674 57747722 -91769315 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1025 1692 198 106 3 chr6 57748120 57748459 -91768578 + ORR1D1 LTR MaLR 1 374 0 4 1025 6318 207 65 19 chr6 57748459 57749769 -91767268 + ORR1D1-int LTR MaLR 1 1370 0 4 1025 955 216 61 20 chr6 57749774 57750071 -91766966 + ORR1D1 LTR MaLR 6 374 0 4 1025 482 252 0 116 chr6 57750583 57750704 -91766333 + RSINE1 SINE B4 3 109 -56 4 1025 3089 241 91 96 chr6 57750704 57750914 -91766123 + L1_Rod LINE L1 3459 3663 -2184 4 1025 243 0 0 0 chr6 57750914 57750941 -91766096 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1025 3089 241 91 96 chr6 57750941 57751142 -91765895 + L1_Rod LINE L1 3664 3895 -1952 4 1025 3340 60 3 0 chr6 57751142 57751526 -91765511 + IAPEY_LTR LTR ERVK 1 385 0 4 1025 3089 250 88 99 chr6 57751526 57752802 -91764235 + L1_Rod LINE L1 3842 5022 -858 4 1025 219 36 0 0 chr6 57752802 57752830 -91764207 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1025 2751 280 78 112 chr6 57752830 57753208 -91763829 + L1_Rod LINE L1 5023 5443 -437 4 1025 840 277 59 100 chr6 57753206 57753696 -91763341 + Lx8 LINE L1 7003 7472 -1 4 1025 643 203 56 63 chr6 57753710 57753852 -91763185 + B1_Mus2 SINE Alu 3 143 -4 4 1025 438 20 0 0 chr6 57753856 57753907 -91763130 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 4 1025 372 206 53 123 chr6 57754235 57754372 -91762665 + B3 SINE B2 40 163 -32 4 1025 2781 187 98 25 chr6 57754373 57755053 -91761984 + Lx9 LINE L1 6839 7568 -76 4 1025 230 258 42 21 chr6 57755124 57755219 -91761818 + L1MD3 LINE L1 7899 7995 0 4 1025 2127 161 60 16 chr6 57756029 57756395 -91760642 - MTC LTR MaLR 0 421 40 4 1025 1150 294 103 2 chr6 57758024 57758451 -91758586 + RCHARR1 DNA MER1_type 33 503 -471 4 1025 963 92 52 7 chr6 57758451 57758605 -91758432 - ORR1D1 LTR MaLR 0 374 214 4 1025 5546 185 69 25 chr6 57758602 57759743 -91757294 - ORR1D1-int LTR MaLR -78 1292 82 4 1025 200 34 0 33 chr6 57759743 57759773 -91757264 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1025 1149 300 94 64 chr6 57759773 57759826 -91757211 - ORR1D1-int LTR MaLR -1882 81 4 4 1025 1170 226 184 0 chr6 57759832 57760141 -91756896 - ORR1D1 LTR MaLR -8 366 1 4 1025 1220 220 139 43 chr6 57760338 57760471 -91756566 + MTD LTR MaLR 34 193 -226 4 1025 1814 205 48 14 chr6 57760471 57760842 -91756195 + ORR1C2 LTR MaLR 1 384 0 4 1025 1220 220 139 43 chr6 57760842 57761060 -91755977 + MTD LTR MaLR 194 419 0 4 1025 515 294 102 16 chr6 57761123 57761437 -91755600 + Charlie2b DNA MER1_type 2404 2744 -38 4 1025 263 305 12 24 chr6 57761517 57761601 -91755436 - Lx8 LINE L1 -158 7315 7233 4 1025 28 71 0 0 chr6 57761686 57761742 -91755295 + AT_rich Low_complexity Low_complexity 1 56 0 4 1025 370 315 11 0 chr6 57761763 57761855 -91755182 - B3A SINE B2 -66 132 40 4 1025 193 227 68 0 chr6 57762584 57762628 -91754409 - L2a LINE L2 -6 3420 3374 4 1025 255 291 12 48 chr6 57762633 57762716 -91754321 - ID4 SINE ID -1 82 3 4 1025 229 106 20 41 chr6 57763814 57763863 -91753174 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 1025 856 166 50 7 chr6 57763864 57764004 -91753033 - B1_Mus2 SINE Alu 0 147 2 4 1025 255 307 6 127 chr6 57764891 57765048 -91751989 + MIR SINE MIR 115 252 -10 4 1025 2622 203 35 115 chr6 57765545 57766358 -91750679 + L1_Mus2 LINE L1 432 1108 -5526 4 1025 405 162 39 39 chr6 57766358 57766461 -91750576 + L1_Mus1 LINE L1 6465 6567 0 4 1025 31899 104 15 6 chr6 57766461 57771968 -91745069 + L1_Mus2 LINE L1 1109 6566 0 4 1025 263 189 0 0 chr6 57772068 57772121 -91744916 - B1_Mur4 SINE Alu -2 148 96 4 1025 324 222 321 0 chr6 57772310 57772391 -91744646 + PB1D10 SINE Alu 4 110 -7 4 1025 399 89 0 0 chr6 57772982 57773038 -91743999 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1025 537 30 0 0 chr6 57773551 57773618 -91743419 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1025 234 150 0 0 chr6 57773834 57773874 -91743163 + (GAA)n Simple_repeat Simple_repeat 2 41 0 4 1025 1307 72 0 6 chr6 57773874 57774055 -91742982 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1025 220 255 0 0 chr6 57774060 57774107 -91742930 + GA-rich Low_complexity Low_complexity 1 47 0 4 1025 21 0 0 0 chr6 57775986 57776007 -91741030 + AT_rich Low_complexity Low_complexity 1 21 0 4 1025 410 287 182 11 chr6 57776207 57776383 -91740654 - RMER5 LTR ERV1 -97 437 232 4 1025 282 287 39 10 chr6 57776662 57776764 -91740273 - Lx9 LINE L1 -182 7462 7358 4 1025 2662 320 52 49 chr6 57776798 57777433 -91739604 - Lx8 LINE L1 -559 6914 6274 4 1025 1937 169 65 70 chr6 57777433 57777802 -91739235 - ORR1B2 LTR MaLR 0 367 1 4 1025 2582 278 47 27 chr6 57777802 57778662 -91738375 - Lx8 LINE L1 -1200 6273 5376 4 1025 1370 228 46 84 chr6 57779017 57779409 -91737628 - MTE2b LTR MaLR 0 379 3 4 1025 7319 205 102 41 chr6 57779692 57781724 -91735313 - Lx9 LINE L1 -8 7636 5387 4 1025 4190 197 46 17 chr6 57781731 57782561 -91734476 + RMER13A LTR ERVK 1 854 -6 4 1025 268 241 93 0 chr6 57782577 57782640 -91734397 - Lx9 LINE L1 -446 5401 5336 4 1025 378 0 0 0 chr6 57782640 57782682 -91734355 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 4 1025 268 241 93 0 chr6 57782682 57782726 -91734311 - Lx9 LINE L1 -512 5335 5285 4 1025 2868 210 77 22 chr6 57782807 57783575 -91733462 - Lx9 LINE L1 -581 5266 4457 4 1025 742 143 0 119 chr6 57783579 57783738 -91733299 + ORR1A4 LTR MaLR 1 140 -189 4 1025 7396 76 12 3 chr6 57783739 57785247 -91731790 + L1_Mus2 LINE L1 5041 6565 -1 4 1025 819 132 201 19 chr6 57785260 57785414 -91731623 + ORR1A4 LTR MaLR 148 329 0 4 1025 2830 222 30 37 chr6 57785436 57785907 -91731130 - Lx9 LINE L1 -1395 4452 3972 4 1025 1363 196 65 108 chr6 57785907 57786307 -91730730 - ORR1C2 LTR MaLR 0 384 2 4 1025 2830 222 30 37 chr6 57786307 57786615 -91730422 - Lx9 LINE L1 -1876 3971 3679 4 1025 5718 196 29 14 chr6 57786606 57787926 -91729111 - Lx9 LINE L1 -3065 2782 1444 4 1025 212 103 51 0 chr6 57787966 57788005 -91729032 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 4 1025 3513 175 60 24 chr6 57788007 57788599 -91728438 + Lx7 LINE L1 4017 4625 -1255 4 1025 372 22 0 0 chr6 57788599 57788644 -91728393 + (CCAA)n Simple_repeat Simple_repeat 2 46 0 4 1025 3513 175 60 24 chr6 57788644 57788817 -91728220 + Lx7 LINE L1 4626 4810 -1070 4 1025 2199 232 15 9 chr6 57788819 57789279 -91727758 + RLTR18B LTR ERVK 1 463 -49 4 1025 1276 239 109 55 chr6 57789285 57789385 -91727652 + Lx7 LINE L1 5813 5918 -1778 4 1025 369 0 0 0 chr6 57789385 57789426 -91727611 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1025 1276 239 109 55 chr6 57789426 57789839 -91727198 + Lx7 LINE L1 5919 6354 -1342 4 1025 5424 220 40 59 chr6 57791079 57791329 -91725708 + Lx7 LINE L1 6323 6577 -1119 4 1025 1088 116 0 0 chr6 57791329 57791476 -91725561 + B1_Mus1 SINE Alu 2 148 0 4 1025 5424 220 40 59 chr6 57791476 57792626 -91724411 + Lx7 LINE L1 6578 7696 0 4 1025 603 319 73 16 chr6 57792634 57792825 -91724212 + B4 SINE B4 90 291 -1 4 1025 423 246 83 15 chr6 57793368 57793500 -91723537 + B3 SINE B2 71 211 -5 4 1025 601 276 48 68 chr6 57795310 57795792 -91721245 - Lx9 LINE L1 -1398 6246 5874 4 1025 789 232 72 0 chr6 57796369 57796563 -91720474 + B3 SINE B2 4 211 -5 4 1025 201 74 0 0 chr6 57796572 57796599 -91720438 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1025 221 351 12 38 chr6 57796982 57797062 -91719975 - ID4_ SINE ID -4 79 2 4 1025 348 309 23 54 chr6 57797085 57797215 -91719822 - ID_B1 SINE B4 0 224 99 4 1025 342 0 0 0 chr6 57798127 57798165 -91718872 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1025 183 42 0 0 chr6 57798588 57798612 -91718425 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 4 1025 217 239 42 0 chr6 57799778 57799849 -91717188 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1025 342 0 0 0 chr6 57800091 57800129 -91716908 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1025 216 32 0 31 chr6 57800893 57800925 -91716112 + ID4_ SINE ID 8 38 -45 4 1025 719 190 32 133 chr6 57800939 57801164 -91715873 + L1_Rod LINE L1 1466 1654 -4193 4 1025 1026 122 0 0 chr6 57801164 57801344 -91715693 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1025 719 190 32 133 chr6 57801344 57801464 -91715573 + L1_Rod LINE L1 1655 1775 -4072 4 128 34392 48 5 5 chr6 57801465 57806407 -91710630 + L1Md_F2 LINE L1 643 5586 -297 4 1026 7721 56 4 15 chr6 57806407 57807414 -91709623 + L1Md_F2 LINE L1 5587 6582 0 4 1026 2722 220 55 1 chr6 57807416 57808094 -91708943 + L1_Rod LINE L1 1763 2476 -3371 4 1026 2147 245 75 87 chr6 57808114 57809468 -91707569 - RMER1B Other Other -5 1061 2 4 1026 3561 236 62 36 chr6 57809944 57811323 -91705714 + L1_Rod LINE L1 2495 3909 -1938 4 1026 31287 102 19 31 chr6 57811325 57818073 -91698964 + Lx3A LINE L1 33 6691 -290 4 1026 2776 216 6 6 chr6 57818074 57818624 -91698413 + L1_Mur2 LINE L1 5325 5874 -3 4 1026 7155 212 36 23 chr6 57818636 57819879 -91697158 + Lx5 LINE L1 4141 5418 -462 4 1026 2719 48 33 0 chr6 57819879 57820212 -91696825 + ORR1A0 LTR MaLR 3 346 0 4 1026 7155 265 38 65 chr6 57820212 57821902 -91695135 + Lx5 LINE L1 5419 7049 -1 4 1026 278 314 12 0 chr6 57822187 57822273 -91694764 + B3 SINE B2 73 159 -57 4 1026 495 0 0 0 chr6 57822299 57822354 -91694683 + (TAAAA)n Simple_repeat Simple_repeat 5 59 0 4 1026 423 0 0 0 chr6 57823148 57823195 -91693842 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1026 3540 74 2 0 chr6 57823483 57823941 -91693096 - L1_Mus2 LINE L1 0 6566 6108 4 1026 225 0 0 0 chr6 57824090 57824115 -91692922 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1026 243 318 32 54 chr6 57824144 57824237 -91692800 - B1_Mus1 SINE Alu -57 91 1 4 1026 261 83 0 0 chr6 57825337 57825373 -91691664 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1026 25 0 0 0 chr6 57825420 57825445 -91691592 + AT_rich Low_complexity Low_complexity 1 25 0 4 1026 9013 216 33 17 chr6 57827348 57830400 -91686637 + Lx5 LINE L1 3917 7031 -19 4 1026 246 128 0 0 chr6 57830400 57830439 -91686598 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 4 1026 5182 267 41 6 chr6 57830439 57830451 -91686586 + Lx5 LINE L1 7032 7042 -8 4 1026 1110 198 84 17 chr6 57830456 57830811 -91686226 + Lx5 LINE L1 2994 3372 -2508 5 1026 18140 89 13 9 chr6 57830812 57832154 -91684883 - L1Md_F2 LINE L1 0 6582 5244 5 1026 189 0 0 0 chr6 57832154 57832175 -91684862 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1026 29655 83 9 1 chr6 57832175 57835436 -91681601 - L1Md_F2 LINE L1 -640 5243 1969 5 1026 192 77 0 0 chr6 57835436 57835462 -91681575 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1026 29655 108 40 1 chr6 57835462 57836901 -91680136 - L1Md_F2 LINE L1 -3915 1968 458 5 1026 6786 227 47 13 chr6 57836902 57838709 -91678328 + Lx5 LINE L1 3362 5229 -651 5 1026 460 278 12 58 chr6 57838718 57838890 -91678147 - RNLTR23 LTR ERVK 0 642 479 5 1026 1986 205 20 10 chr6 57839181 57839625 -91677412 + Lx5 LINE L1 5236 5689 -1361 5 1026 3299 230 8 39 chr6 57839624 57840246 -91676791 + L1VL4 LINE L1 186 797 -5505 5 1026 7708 119 38 4 chr6 57840246 57841456 -91675581 + Lx3_Mus LINE L1 5759 7009 0 5 1026 8892 116 15 19 chr6 57841456 57843000 -91674037 + L1VL4 LINE L1 798 2323 -1236 5 1026 11067 149 8 190 chr6 57842994 57844976 -91672061 + L1_Mus3 LINE L1 3391 5354 -529 5 1026 279 0 0 0 chr6 57844976 57845007 -91672030 + (TAGG)n Simple_repeat Simple_repeat 1 31 0 5 1026 11067 149 8 190 chr6 57845007 57845535 -91671502 + L1_Mus3 LINE L1 5355 5365 -518 5 1026 3983 89 14 2 chr6 57845535 57846088 -91670949 + L1_Mus1 LINE L1 6008 6567 0 5 1026 11067 128 7 44 chr6 57846088 57847383 -91669654 + L1_Mus3 LINE L1 5366 6637 -1 5 1026 6547 16 1 0 chr6 57847444 57848191 -91668846 - L1Md_A LINE L1 -1 6581 5834 5 1026 1540 277 68 20 chr6 57848223 57848779 -91668258 + Lx6 LINE L1 5691 6273 -1187 5 1026 2458 268 128 17 chr6 57848783 57849604 -91667433 + Lx6 LINE L1 6522 7433 -27 5 1026 787 246 31 68 chr6 57851855 57852208 -91664829 - Lx9 LINE L1 -1398 6246 5907 5 1026 8467 150 13 3 chr6 57852523 57854063 -91662974 + Lx2 LINE L1 5430 6983 -14 5 1026 192 77 0 0 chr6 57854389 57854415 -91662622 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1026 482 330 127 0 chr6 57854429 57854602 -91662435 + B3 SINE B2 21 215 -1 5 1026 949 92 35 14 chr6 57854686 57854830 -91662207 - B1_Mm SINE Alu 0 147 1 5 1026 234 62 0 0 chr6 57855953 57855985 -91661052 + (CAG)n Simple_repeat Simple_repeat 2 33 0 5 1026 4815 224 53 7 chr6 57858558 57859856 -91657181 + Lx6 LINE L1 3872 5229 -651 5 1026 387 274 68 50 chr6 57859865 57860026 -91657011 - RNLTR23 LTR ERVK 0 642 479 5 1026 1774 230 25 9 chr6 57860316 57860759 -91656278 + Lx6 LINE L1 5236 5685 -195 5 1026 3333 220 7 48 chr6 57860764 57861387 -91655650 + L1_Mus3 LINE L1 548 1152 -5505 5 1026 7942 121 22 2 chr6 57861387 57862613 -91654424 + Lx3_Mus LINE L1 5759 7009 0 5 1026 13584 223 167 15 chr6 57862613 57864235 -91652802 + L1_Mus3 LINE L1 1153 3476 -2407 5 1026 270 0 0 0 chr6 57864235 57864265 -91652772 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 5 1026 13584 151 15 6 chr6 57864265 57867409 -91649628 + L1_Mus3 LINE L1 3472 6638 0 5 1026 1679 288 41 30 chr6 57867450 57868867 -91648170 + Lx6 LINE L1 5691 7413 -47 5 1026 22 0 0 0 chr6 57868877 57868899 -91648138 + AT_rich Low_complexity Low_complexity 1 22 0 5 1026 207 0 0 0 chr6 57868947 57868970 -91648067 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1026 1027 106 0 0 chr6 57868973 57869115 -91647922 - B1_Mus1 SINE Alu -6 142 1 5 1026 275 298 142 22 chr6 57869365 57869499 -91647538 + B3 SINE B2 67 216 0 5 1026 35062 46 0 6 chr6 57869504 57874831 -91642206 + L1Md_T LINE L1 196 5589 -297 5 1026 8355 32 1 1 chr6 57874831 57875827 -91641210 + L1Md_T LINE L1 5590 6585 0 5 1026 878 247 31 70 chr6 57877667 57878054 -91638983 - Lx9 LINE L1 -1398 6246 5875 5 1026 7868 159 15 3 chr6 57878334 57879866 -91637171 + Lx2 LINE L1 5429 6978 -19 5 1026 628 314 69 0 chr6 57880253 57880441 -91636596 + B3 SINE B2 15 215 -1 5 1026 24 53 0 0 chr6 57880556 57880594 -91636443 + AT_rich Low_complexity Low_complexity 1 38 0 5 1026 22 35 0 0 chr6 57882227 57882256 -91634781 + AT_rich Low_complexity Low_complexity 1 29 0 5 1026 967 196 0 0 chr6 57884208 57884402 -91632635 + Lx5 LINE L1 3917 4110 -1767 5 1026 4717 154 11 1 chr6 57884790 57885492 -91631545 - RLTR45-int LTR ERVK -204 7202 6494 5 1026 914 252 5 0 chr6 57885554 57885855 -91631182 - RLTR45-int LTR ERVK -469 7748 7506 5 1026 7473 184 87 133 chr6 57885858 57888583 -91628454 - RLTR45-int LTR ERVK -1173 6071 3473 5 1026 675 167 25 0 chr6 57888598 57888718 -91628319 - RMER16-int LTR ERVK -5077 1060 938 5 1026 1876 207 145 34 chr6 57888723 57889248 -91627789 - RMER16-int LTR ERVK -4587 819 237 5 1026 33171 91 16 2 chr6 57889412 57895617 -91621420 - L1Md_F2 LINE L1 -4 6578 284 5 1026 773 220 8 0 chr6 57896339 57896471 -91620566 - ETnERV2-int LTR ERVK -204 7202 7070 5 1026 5231 231 39 35 chr6 57896472 57899506 -91617531 + Lx5 LINE L1 4105 7053 -5 5 1026 293 204 63 27 chr6 57899549 57899660 -91617377 + Lx5 LINE L1 3020 3134 -2743 5 1026 10050 231 70 41 chr6 57900456 57904297 -91612740 + Lx5 LINE L1 3112 7049 -1 5 1026 1400 128 31 13 chr6 57904640 57904869 -91612168 - Lx2 LINE L1 0 6997 6765 5 1026 1590 116 4 0 chr6 57904858 57905090 -91611947 - Lx2 LINE L1 -352 6645 6413 5 1026 401 237 98 8 chr6 57905125 57905257 -91611780 + B3 SINE B2 73 216 0 5 1026 22 0 0 0 chr6 57905261 57905283 -91611754 + AT_rich Low_complexity Low_complexity 1 22 0 5 1026 1104 160 75 0 chr6 57905284 57905496 -91611541 - Lx3B LINE L1 -2 6971 6744 5 1026 212 0 0 35 chr6 57905503 57905532 -91611505 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 1026 24 53 0 0 chr6 57906948 57906986 -91610051 + AT_rich Low_complexity Low_complexity 1 38 0 5 1026 716 289 28 55 chr6 57907413 57907776 -91609261 - Lx9 LINE L1 -1417 6227 5875 5 1026 676 272 81 5 chr6 57908402 57908587 -91608450 + B3 SINE B2 18 216 0 5 1026 324 0 0 0 chr6 57909135 57909171 -91607866 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 5 1026 372 59 0 0 chr6 57909895 57909946 -91607091 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1026 9598 148 25 19 chr6 57912138 57915214 -91601823 + Lx3_Mus LINE L1 3917 7008 -1 5 1026 5690 201 63 26 chr6 57915218 57916864 -91600173 + Lx3_Mus LINE L1 5278 6991 -18 5 1026 3268 95 7 0 chr6 57916864 57917317 -91599720 - L1_Mur1 LINE L1 -73 5813 5358 5 1026 5783 120 25 23 chr6 57917311 57918250 -91598787 - L1_Mus4 LINE L1 -7 6629 5690 5 1026 3464 123 73 49 chr6 57918250 57918966 -91598071 + RMER17D2 LTR ERVK 77 809 0 5 1026 35 0 0 0 chr6 57918984 57919019 -91598018 + AT_rich Low_complexity Low_complexity 1 35 0 5 1026 23064 161 38 18 chr6 57919019 57924569 -91592468 - L1_Mur1 LINE L1 -200 5686 33 5 1026 414 0 0 0 chr6 57924688 57924734 -91592303 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1026 1039 68 7 0 chr6 57924955 57925102 -91591935 - L1Md_F2 LINE L1 -13 6569 6422 5 1026 246 214 35 18 chr6 57925330 57925387 -91591650 - RLTR25A LTR ERVK -651 452 395 5 1026 235 105 17 17 chr6 57925387 57925445 -91591592 + (TTTTTG)n Simple_repeat Simple_repeat 4 61 0 5 1026 462 151 0 0 chr6 57925446 57925519 -91591518 - RLTR25A LTR ERVK -628 400 328 5 1026 209 122 0 24 chr6 57925642 57925684 -91591353 + (TTTTTA)n Simple_repeat Simple_repeat 1 41 0 5 1026 1824 105 103 50 chr6 57925720 57925966 -91591071 - Lx3A LINE L1 -830 6151 5915 5 1026 252 0 0 0 chr6 57925966 57925994 -91591043 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 5 1026 1824 105 103 50 chr6 57925994 57926088 -91590949 - Lx3A LINE L1 -1067 5914 5795 5 1026 3120 82 5 0 chr6 57926087 57926491 -91590546 + Lx3A LINE L1 5379 5784 -102 5 1026 1216 274 42 13 chr6 57926491 57926798 -91590239 - RLTR25A LTR ERVK -773 330 15 5 1026 749 201 71 0 chr6 57926799 57926953 -91590084 + Lx7 LINE L1 6756 6920 -776 5 1026 875 234 84 44 chr6 57927010 57927331 -91589706 + Lx7 LINE L1 7363 7696 0 5 1026 507 362 50 10 chr6 57927346 57927547 -91589490 + B4 SINE B4 82 290 -2 5 1026 465 232 87 16 chr6 57928035 57928162 -91588875 + B3 SINE B2 78 213 -3 5 1026 1182 104 40 0 chr6 57928176 57928349 -91588688 - B2_Mm2 SINE B2 -15 180 1 5 1026 633 294 23 77 chr6 57930058 57930448 -91586589 - Lx9 LINE L1 -1398 6246 5878 5 1026 432 55 0 0 chr6 57931479 57931534 -91585503 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1026 374 276 223 29 chr6 57932418 57932593 -91584444 + B3 SINE B2 3 211 -5 5 128 180 0 0 0 chr6 57933808 57933828 -91583209 + (CAG)n Simple_repeat Simple_repeat 2 21 0 5 1027 420 20 0 0 chr6 57933928 57933977 -91583060 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1027 388 296 0 43 chr6 57934007 57934099 -91582938 - PB1D10 SINE Alu -29 88 1 5 1027 249 360 29 20 chr6 57934008 57934110 -91582927 - B4 SINE B4 -113 179 77 5 1027 233 200 0 0 chr6 57935991 57936031 -91581006 + ID SINE ID 2 41 -183 5 1027 3427 212 43 56 chr6 57936066 57937004 -91580033 + L1_Rod LINE L1 1478 2416 -3431 5 1027 2122 108 19 3 chr6 57937004 57937320 -91579717 + L1_Mus3 LINE L1 6311 6631 -7 5 1027 3427 212 43 56 chr6 57937320 57937470 -91579567 + L1_Rod LINE L1 2417 2552 -3295 5 1027 528 176 7 14 chr6 57937564 57937702 -91579335 + CT-rich Low_complexity Low_complexity 2 138 0 5 1027 5134 69 1 0 chr6 57937820 57938486 -91578551 + L1Md_F2 LINE L1 4920 5586 -297 5 1027 7426 66 11 14 chr6 57938487 57939472 -91577565 + L1Md_F2 LINE L1 5588 6569 -13 5 1027 482 147 0 0 chr6 57939662 57939737 -91577300 + MTC LTR MaLR 1 75 -346 5 1027 4605 81 33 0 chr6 57939738 57940370 -91576667 + Lx3_Mus LINE L1 6352 7004 -5 5 1027 1205 230 117 22 chr6 57940455 57940771 -91576266 + MTC LTR MaLR 68 413 -8 5 1027 398 216 29 10 chr6 57940774 57940877 -91576160 + MTC-int LTR MaLR 2 106 -1152 5 1027 2462 176 38 5 chr6 57940878 57941444 -91575593 - Lx2B LINE L1 -1043 5957 5354 5 1027 1236 57 11 6 chr6 57941445 57941620 -91575417 + (TCC)n Simple_repeat Simple_repeat 3 178 0 5 1027 189 0 0 0 chr6 57941620 57941641 -91575396 + (TTC)n Simple_repeat Simple_repeat 3 23 0 5 1027 7219 71 18 13 chr6 57941667 57942695 -91574342 - L1_Mus2 LINE L1 -12 6554 5521 5 1027 701 297 25 7 chr6 57942696 57942981 -91574056 + MERVL_2A-int LTR ERVL 2586 2875 -2886 5 1027 27 62 0 0 chr6 57943639 57943687 -91573350 + AT_rich Low_complexity Low_complexity 1 48 0 5 1027 1894 88 7 18 chr6 57943758 57944036 -91573001 - Lx3_Mus LINE L1 -7 7002 6728 5 1027 6408 99 19 0 chr6 57944611 57945520 -91571517 - L1_Mus3 LINE L1 -6 6632 5707 5 1027 7246 128 25 25 chr6 57945521 57946841 -91570196 - MusHAL1 LINE L1 -594 2118 799 5 1027 33420 79 8 6 chr6 57946833 57953123 -91563914 - L1Md_F2 LINE L1 -2 6583 304 5 1027 376 185 0 0 chr6 57953103 57953168 -91563869 - L1Md_F2 LINE L1 -6192 427 363 5 1027 4589 108 33 4 chr6 57953168 57953355 -91563682 - L1VL4 LINE L1 -1900 1659 1464 5 1027 210 37 0 0 chr6 57953355 57953382 -91563655 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1027 4589 142 22 44 chr6 57953382 57954633 -91562404 - L1VL4 LINE L1 -2096 1463 254 5 1027 760 92 17 0 chr6 57954957 57955077 -91561960 - L1_Mus1 LINE L1 -1 6566 6445 5 1027 1023 106 0 0 chr6 57955080 57955221 -91561816 - B1_Mus1 SINE Alu -7 141 1 5 1027 13055 120 12 8 chr6 57955221 57958085 -91558952 - L1_Mus3 LINE L1 -10 6628 3754 5 1027 567 269 22 22 chr6 57958094 57958273 -91558764 - L1VL2 LINE L1 -6093 242 64 5 1027 699 239 30 91 chr6 57960070 57960443 -91556594 - Lx9 LINE L1 -1417 6227 5878 5 1027 616 286 76 0 chr6 57961059 57961244 -91555793 + B3 SINE B2 18 216 0 5 1027 369 62 0 0 chr6 57961352 57961400 -91555637 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1027 4500 140 43 15 chr6 57962557 57963220 -91553817 + Lx LINE L1 5847 6519 -135 6 1027 216 0 0 0 chr6 57963220 57963244 -91553793 + (TGGG)n Simple_repeat Simple_repeat 1 24 0 6 1027 4500 140 43 15 chr6 57963244 57963328 -91553709 + Lx LINE L1 6520 6614 -40 6 1027 30 27 0 0 chr6 57963391 57963428 -91553609 + AT_rich Low_complexity Low_complexity 1 37 0 6 1027 5589 195 7 79 chr6 57965800 57966407 -91550630 + Lx5 LINE L1 3917 4506 -1371 6 1027 1700 66 4 84 chr6 57966407 57966670 -91550367 + L1_Mus2 LINE L1 6325 6566 0 6 1027 5589 195 7 79 chr6 57966670 57967422 -91549615 + Lx5 LINE L1 4507 5178 -699 6 1027 3390 240 13 8 chr6 57967984 57969153 -91547884 + Lx5 LINE L1 5246 6428 -622 6 1027 549 0 0 0 chr6 57969157 57969218 -91547819 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1027 9864 225 37 30 chr6 57969230 57969741 -91547296 + Lx6 LINE L1 2998 3512 -2368 6 1027 1599 130 21 21 chr6 57969741 57970024 -91547013 - Lx LINE L1 -5 6649 6367 6 1027 9864 234 35 28 chr6 57970024 57972845 -91544192 + Lx6 LINE L1 3513 6618 -1078 6 1027 214 186 0 0 chr6 57972852 57972895 -91544142 + T-rich Low_complexity Low_complexity 1 43 0 6 1027 361 276 21 31 chr6 57973060 57973157 -91543880 - B1F1 SINE Alu -53 96 1 6 1027 447 19 0 0 chr6 57973653 57973705 -91543332 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1027 207 0 0 0 chr6 57973705 57973727 -91543310 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1027 3187 50 0 0 chr6 57974413 57974810 -91542227 - L1Md_F2 LINE L1 -10 6572 6176 6 1027 1404 60 0 0 chr6 57975395 57975579 -91541458 + L1Md_A LINE L1 6399 6582 0 6 1027 232 227 0 0 chr6 57975674 57975718 -91541319 + ID SINE ID 2 45 -179 6 1027 2192 219 72 62 chr6 57975726 57976522 -91540515 + L1_Rod LINE L1 1466 2269 -3578 6 1027 387 244 8 47 chr6 57976508 57976637 -91540400 + L1_Rod LINE L1 2429 2552 -3295 6 1027 298 290 10 10 chr6 57976732 57976833 -91540204 + CT-rich Low_complexity Low_complexity 2 102 0 6 1027 412 163 11 0 chr6 57977107 57977191 -91539846 + MTC LTR MaLR 1 89 -330 6 1027 1188 248 97 19 chr6 57977250 57977571 -91539466 + MTC LTR MaLR 68 413 -8 6 1027 389 278 16 7 chr6 57977574 57977710 -91539327 + MTC-int LTR MaLR 2 134 -1236 6 1027 507 56 0 0 chr6 57977711 57977783 -91539254 - L1_Mus1 LINE L1 -594 5973 5902 6 1027 416 178 0 0 chr6 57977778 57977851 -91539186 - Lx2B LINE L1 -1222 5778 5706 6 1027 543 268 97 10 chr6 57977854 57978050 -91538987 + B3 SINE B2 4 216 0 6 1027 5242 236 93 31 chr6 57978071 57979658 -91537379 - RLTR22_Mur LTR ERVK 0 1848 176 6 1027 369 0 0 0 chr6 57979658 57979699 -91537338 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1027 378 0 0 0 chr6 57979699 57979740 -91537297 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1027 5242 236 93 31 chr6 57979740 57979813 -91537224 - RLTR22_Mur LTR ERVK -1673 175 84 6 1027 4169 37 44 2 chr6 57979899 57980417 -91536620 + L1Md_F3 LINE L1 6043 6582 -2 6 1027 1439 86 5 0 chr6 57980504 57980702 -91536335 + L1_Mus2 LINE L1 6368 6566 0 6 1027 1836 203 64 67 chr6 57982097 57982752 -91534285 + L1_Rod LINE L1 1467 2119 -3728 6 1027 6089 134 17 16 chr6 57982803 57984671 -91532366 + L1VL2 LINE L1 67 1936 -1679 6 1027 31944 102 7 5 chr6 57984672 57990919 -91526118 + L1_Mus4 LINE L1 278 6631 -8 6 1027 1018 169 25 0 chr6 57990919 57991120 -91525917 + Lx LINE L1 6443 6648 -6 6 1027 2261 144 27 5 chr6 57991132 57991538 -91525499 - Lx4A LINE L1 -739 5138 4724 6 1027 6482 149 39 4 chr6 57991539 57993142 -91523895 + Lx4A LINE L1 5166 6847 -211 6 1027 915 252 60 66 chr6 57993142 57993608 -91523429 + RMER2 LTR ERV1 1 567 0 6 1027 1506 261 33 84 chr6 57993750 57994236 -91522801 - RMER5 LTR ERV1 -73 461 1 6 1027 2027 289 20 52 chr6 57994273 57995024 -91522013 + MERVL_2A-int LTR ERVL 2261 2987 -2774 6 1027 2722 251 41 14 chr6 57995044 57995758 -91521279 + Lx7 LINE L1 6578 7310 -386 6 1027 360 0 0 0 chr6 57995780 57995820 -91521217 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1027 483 33 0 0 chr6 57995820 57995880 -91521157 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1027 764 247 76 29 chr6 57995881 57996156 -91520881 + Lx7 LINE L1 7409 7696 0 6 1027 224 170 0 19 chr6 57996353 57996407 -91520630 + (CATA)n Simple_repeat Simple_repeat 2 54 0 6 1027 7657 72 5 15 chr6 57996945 57997976 -91519061 - L1Md_F2 LINE L1 -6 6576 5586 6 1027 2938 93 7 0 chr6 57997971 57998403 -91518634 + L1_Mm LINE L1 2918 3352 -2531 6 1027 183 42 0 0 chr6 57998420 57998444 -91518593 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 6 1027 932 241 58 25 chr6 57998463 57998706 -91518331 - Lx4B LINE L1 -51 7007 6757 6 1027 435 289 83 0 chr6 57998774 57998895 -91518142 + B3 SINE B2 86 216 0 6 1027 414 281 28 57 chr6 58000669 58000945 -91516092 - Lx9 LINE L1 -1398 6246 5871 1 1027 288 0 0 0 chr6 58001299 58001331 -91515706 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1027 186 103 0 0 chr6 58001331 58001359 -91515678 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 1027 21 0 0 0 chr6 58001459 58001480 -91515557 + AT_rich Low_complexity Low_complexity 1 21 0 4 1027 423 43 72 0 chr6 58002826 58002895 -91514142 + Lx3_Mus LINE L1 6929 7002 -7 5 1027 2236 228 71 23 chr6 58002908 58003214 -91513823 + L1_Mur3 LINE L1 4909 5216 -664 6 1027 1691 196 21 48 chr6 58003214 58003632 -91513405 - MTB_Mm LTR MaLR 0 407 1 7 1027 2236 228 71 23 chr6 58003632 58004115 -91512922 + L1_Mur3 LINE L1 5217 5736 -144 6 1027 2238 231 44 10 chr6 58004153 58004744 -91512293 + RMER19C LTR ERVK 1 611 0 8 1027 13527 172 43 16 chr6 58004753 58009248 -91507789 + MurERV4_19-int LTR ERVK 10 4626 -1154 8 1027 203 61 30 0 chr6 58009251 58009284 -91507753 + (TAA)n Simple_repeat Simple_repeat 3 36 0 9 1027 1260 263 7 7 chr6 58009380 58009682 -91507355 - RMER5 LTR ERV1 -68 466 165 1 1027 575 295 42 42 chr6 58009676 58009892 -91507145 - RMER5 LTR ERV1 -314 220 5 1 1027 816 268 31 0 chr6 58009940 58010164 -91506873 + MERVL_2A-int LTR ERVL 2268 2498 -3263 1 1027 275 281 85 78 chr6 58010275 58010547 -91506490 - RLTR11B LTR ERVK -24 504 241 1 1027 719 243 27 100 chr6 58010561 58010822 -91506215 - RLTR11B LTR ERVK -211 242 1 1 1027 1284 121 148 19 chr6 58010943 58011213 -91505824 + Lx3C LINE L1 4660 4964 -913 1 1027 2210 94 82 0 chr6 58011215 58011543 -91505494 + IAPEY2_LTR LTR ERVK 1 355 -2 1 1027 6302 128 25 9 chr6 58011545 58012613 -91504424 + IAPEY3-int LTR ERVK 1 1085 -6595 1 1027 4318 127 6 19 chr6 58012606 58013334 -91503703 + IAPEy-int LTR ERVK 6796 7513 0 1 1027 2134 122 19 0 chr6 58013344 58013664 -91503373 + IAPEY2_LTR LTR ERVK 32 357 0 1 1027 2205 149 48 18 chr6 58013664 58014100 -91502937 + Lx3C LINE L1 4961 5409 -468 1 1027 8728 194 35 12 chr6 58014112 58017051 -91499986 - Lx3C LINE L1 0 6976 3949 1 1027 3599 185 9 0 chr6 58017046 58017867 -91499170 + Lx3C LINE L1 5517 6345 -631 1 1027 3296 180 11 6 chr6 58017867 58018516 -91498521 - Lx2 LINE L1 -341 6656 6005 1 1027 2881 21 0 43 chr6 58018516 58018868 -91498169 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1027 24626 21 40 9 chr6 58018868 58021930 -91495107 + IAPEz-int LTR ERVK 8 3165 -3316 1 1027 9401 24 2 5 chr6 58021919 58023060 -91493977 + IAPEz-int LTR ERVK 5345 6481 0 1 1027 2881 21 0 43 chr6 58023060 58023412 -91493625 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1027 317 184 34 22 chr6 58023415 58023504 -91493533 - Lx2 LINE L1 -989 6008 5919 1 1027 1551 276 7 5 chr6 58023596 58024043 -91492994 + Lx7 LINE L1 6121 6568 -1128 2 1027 416 219 10 0 chr6 58024048 58024144 -91492893 + Lx7 LINE L1 7597 7693 -3 2 1027 2849 128 16 22 chr6 58024654 58025156 -91491881 - Lx LINE L1 -1035 4848 4350 2 1027 5696 150 21 1 chr6 58025156 58025536 -91491501 + Lx LINE L1 4854 5234 -649 2 1027 468 0 0 0 chr6 58025536 58025588 -91491449 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1027 5696 157 65 42 chr6 58025588 58026966 -91490071 + Lx LINE L1 5235 6652 -2 2 1027 27 81 0 0 chr6 58027116 58027178 -91489859 + AT_rich Low_complexity Low_complexity 1 62 0 2 1027 557 248 84 64 chr6 58028920 58029265 -91487772 - Lx9 LINE L1 -1422 6222 5871 2 1027 424 314 0 0 chr6 58029895 58030000 -91487037 + B3 SINE B2 23 127 -89 2 1027 180 271 42 93 chr6 58031357 58031418 -91485619 + L3 LINE CR1 966 1019 -3470 2 1027 480 35 0 0 chr6 58031418 58031476 -91485561 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1027 180 271 42 93 chr6 58031476 58031532 -91485505 + L3 LINE CR1 1020 1077 -3412 2 1027 360 0 0 0 chr6 58031903 58031943 -91485094 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1027 3002 149 2 6 chr6 58033844 58034331 -91482706 + Lx LINE L1 6163 6647 -7 2 1027 22 0 0 0 chr6 58034331 58034353 -91482684 + AT_rich Low_complexity Low_complexity 1 22 0 3 1027 30401 76 4 37 chr6 58034415 58039766 -91477271 + L1Md_F3 LINE L1 412 5585 -298 3 1027 8061 46 3 0 chr6 58039767 58040748 -91476289 + L1Md_F3 LINE L1 5587 6570 -14 3 1027 347 252 57 130 chr6 58040751 58041066 -91475971 + L1_Rod LINE L1 1646 1937 -3910 3 1027 330 87 0 0 chr6 58041261 58041307 -91475730 + (CCA)n Simple_repeat Simple_repeat 2 47 0 3 1027 306 0 0 0 chr6 58042525 58042559 -91474478 + (ATG)n Simple_repeat Simple_repeat 3 36 0 3 1027 28446 85 6 5 chr6 58042660 58046868 -91470169 + L1Md_F2 LINE L1 1373 5585 -298 3 1027 8061 46 5 0 chr6 58046869 58047860 -91469177 + L1Md_F2 LINE L1 5587 6582 0 3 1027 198 0 0 0 chr6 58048616 58048638 -91468399 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1027 266 263 148 20 chr6 58049683 58049784 -91467253 + PB1D10 SINE Alu 1 114 -3 3 1027 790 234 55 50 chr6 58049784 58049986 -91467051 + B3 SINE B2 1 203 -13 3 1027 682 258 98 5 chr6 58050169 58050372 -91466665 + ID_B1 SINE B4 1 222 -2 3 1027 245 356 0 100 chr6 58051418 58051518 -91465519 + Tigger16a DNA Tigger 840 929 -4 4 1027 240 59 0 0 chr6 58052229 58052263 -91464774 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1027 232 330 48 19 chr6 58052834 58052939 -91464098 + B1F2 SINE Alu 10 117 -32 4 1027 406 264 9 45 chr6 58053101 58053212 -91463825 - MTEa LTR MaLR -65 314 208 4 1027 381 43 0 0 chr6 58054856 58054903 -91462134 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 4 1027 264 91 0 0 chr6 58055743 58055787 -91461250 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1027 28 0 0 0 chr6 58056189 58056217 -91460820 + AT_rich Low_complexity Low_complexity 1 28 0 4 1027 1596 233 68 33 chr6 58056259 58056806 -91460231 + L1_Rod LINE L1 1933 2498 -3349 4 1027 5042 115 66 0 chr6 58056845 58057599 -91459438 - Lx3_Mus LINE L1 0 7009 6206 4 1027 1033 147 73 0 chr6 58057604 58057808 -91459229 - L1Md_F LINE L1 -5646 873 655 4 1027 474 214 9 120 chr6 58057806 58058012 -91459025 - L1VL1 LINE L1 -6006 412 215 5 1027 315 0 0 0 chr6 58058430 58058465 -91458572 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1027 735 213 123 11 chr6 58058590 58058851 -91458186 - RLTR22_Mur LTR ERVK -1079 769 480 5 1027 9323 179 48 60 chr6 58058861 58060733 -91456304 + Lx3C LINE L1 3600 5555 -1421 5 1027 866 171 5 33 chr6 58060733 58060901 -91456136 - MTB_Mm LTR MaLR -183 236 66 5 1027 9323 179 48 60 chr6 58060901 58062253 -91454784 + Lx3C LINE L1 5556 6970 -6 5 1027 5881 158 37 4 chr6 58062302 58063349 -91453688 - Lx2 LINE L1 -1 6996 5915 5 1027 1878 287 12 26 chr6 58063428 58064075 -91452962 + Lx7 LINE L1 6119 6756 -940 5 1027 1381 261 77 34 chr6 58064073 58064806 -91452231 + Lx7 LINE L1 6886 7696 0 5 128 415 337 26 47 chr6 58064847 58065037 -91452000 + B4 SINE B4 104 289 -3 5 1028 294 29 0 0 chr6 58065528 58065563 -91451474 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1028 25 31 0 0 chr6 58065667 58065699 -91451338 + AT_rich Low_complexity Low_complexity 1 32 0 5 1028 691 295 33 33 chr6 58067452 58067817 -91449220 - Lx9 LINE L1 -1409 6235 5871 6 1028 22 0 0 0 chr6 58068252 58068274 -91448763 + AT_rich Low_complexity Low_complexity 1 22 0 6 1028 492 278 96 15 chr6 58068408 58068605 -91448432 + B3 SINE B2 3 215 -1 6 1028 55 72 0 0 chr6 58068715 58068826 -91448211 + AT_rich Low_complexity Low_complexity 1 111 0 6 1028 534 57 0 0 chr6 58069968 58070038 -91446999 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1028 180 0 0 0 chr6 58070490 58070510 -91446527 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1028 2551 233 75 48 chr6 58072296 58073352 -91443685 + L1_Rod LINE L1 1466 2549 -3298 6 1028 230 206 16 0 chr6 58073440 58073503 -91443534 + CT-rich Low_complexity Low_complexity 1 64 0 6 1028 1892 223 39 32 chr6 58073847 58074027 -91443010 + MTC LTR MaLR 1 180 -241 6 1028 2570 52 0 6 chr6 58074027 58074354 -91442683 - L1Md_F2 LINE L1 -11 6571 6247 6 1028 1892 223 39 32 chr6 58074354 58074585 -91442452 + MTC LTR MaLR 181 415 -6 6 1028 4885 141 27 67 chr6 58074585 58074804 -91442233 - RLTR13D6 LTR ERVK 0 902 688 7 1028 279 0 0 0 chr6 58074804 58074835 -91442202 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 7 1028 4885 141 27 67 chr6 58074835 58075553 -91441484 - RLTR13D6 LTR ERVK -215 687 5 7 1028 4120 78 20 16 chr6 58075553 58076115 -91440922 + LTRIS2 LTR ERV1 1 564 0 7 1028 839 160 91 6 chr6 58076710 58076886 -91440151 + RMER16-int LTR ERVK 141 331 -5075 7 1028 4447 129 22 20 chr6 58076867 58077625 -91439412 + RMER16-int LTR ERVK 685 1444 -3962 7 1028 5268 157 57 52 chr6 58077616 58079406 -91437631 + RLTR1B-int LTR ERV1 760 2010 -1289 7 1028 3545 77 6 0 chr6 58079427 58079910 -91437127 + RLTR1B-int LTR ERV1 3132 3617 -1446 7 1028 1782 79 10 88 chr6 58080177 58080482 -91436555 - L1_Mus1 LINE L1 -368 6199 5919 7 1028 1322 159 47 4 chr6 58080546 58080780 -91436257 - RLTR11A2 LTR ERVK 0 527 284 7 1028 2781 104 73 7 chr6 58080816 58081253 -91435784 - Lx2A LINE L1 -1 7007 6542 7 1028 366 260 101 47 chr6 58081372 58081501 -91435536 + B1F SINE Alu 2 137 -12 7 1028 25 31 0 0 chr6 58083068 58083100 -91433937 + AT_rich Low_complexity Low_complexity 1 32 0 7 1028 625 228 91 32 chr6 58084240 58084394 -91432643 + RSINE1 SINE B4 2 164 -1 8 1028 307 337 11 0 chr6 58084425 58084514 -91432523 + PB1D10 SINE Alu 7 96 -21 8 1028 636 273 82 29 chr6 58084538 58084817 -91432220 - RLTR15 LTR ERVK -21 338 45 8 1028 204 346 60 45 chr6 58084914 58085047 -91431990 - MIRm SINE MIR -115 161 27 8 1028 481 198 48 19 chr6 58085258 58085361 -91431676 - PB1D10 SINE Alu -1 116 11 8 1028 329 274 20 31 chr6 58085276 58085374 -91431663 - ID_B1 SINE B4 -48 176 80 8 1028 2124 90 19 22 chr6 58085441 58085758 -91431279 - IAPLTR2b LTR ERVK -11 316 1 8 1028 208 319 62 76 chr6 58086158 58086318 -91430719 + MIRb SINE MIR 43 195 -73 8 1028 729 296 84 54 chr6 58086715 58086976 -91430061 - B4 SINE B4 -16 276 8 8 1028 4666 190 106 17 chr6 58087186 58088739 -91428298 - Lx5 LINE L1 -50 7000 5308 8 1028 24 0 0 0 chr6 58089370 58089394 -91427643 + AT_rich Low_complexity Low_complexity 1 24 0 9 1028 2782 66 0 0 chr6 58089397 58089775 -91427262 + L1_Mus1 LINE L1 6208 6567 0 9 1028 311 345 65 22 chr6 58089786 58090017 -91427020 + L1ME4a LINE L1 5681 5921 -203 9 1028 280 329 92 26 chr6 58090537 58090765 -91426272 - MIRb SINE MIR -9 259 17 9 1028 594 0 0 0 chr6 58090963 58091029 -91426008 + (GA)n Simple_repeat Simple_repeat 1 66 0 9 1028 609 135 0 0 chr6 58091657 58091783 -91425254 + (TC)n Simple_repeat Simple_repeat 2 127 0 9 1028 426 20 0 0 chr6 58091783 58091834 -91425203 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1028 219 287 104 47 chr6 58091884 58091990 -91425047 + MIRb SINE MIR 38 149 -119 9 1028 1229 211 36 77 chr6 58092071 58092461 -91424576 - ORR1D1 LTR MaLR 0 374 1 9 1028 181 239 22 0 chr6 58092803 58092849 -91424188 + L2b LINE L2 3319 3365 -10 9 1028 906 312 25 14 chr6 58093564 58093844 -91423193 + B4A SINE B4 6 288 -4 1 1028 600 97 0 0 chr6 58093854 58093947 -91423090 + (CA)n Simple_repeat Simple_repeat 1 93 0 1 1028 347 353 148 31 chr6 58094422 58095318 -91421719 - L2a LINE L2 -86 3340 2334 1 1028 706 298 42 21 chr6 58096041 58096233 -91420804 - B3A SINE B2 0 198 3 1 1028 726 132 15 7 chr6 58096538 58096675 -91420362 + GA-rich Low_complexity Low_complexity 1 138 0 1 1028 2439 132 43 43 chr6 58096833 58097323 -91419714 - L1_Mur3 LINE L1 -2978 2902 2413 1 1028 441 0 0 0 chr6 58097327 58097376 -91419661 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1028 911 172 29 10 chr6 58097377 58097582 -91419455 - L1_Mur3 LINE L1 -3823 2057 1849 1 1028 29643 79 1 36 chr6 58097583 58103208 -91413829 + L1Md_F2 LINE L1 67 5589 -297 1 1028 7860 58 2 1 chr6 58103209 58104202 -91412835 + L1Md_F2 LINE L1 5591 6584 -1 1 1028 3102 180 86 20 chr6 58104210 58105210 -91411827 - L1_Mur3 LINE L1 -4036 1844 778 1 1028 232 265 22 78 chr6 58105210 58105300 -91411737 + PB1D10 SINE Alu 32 116 -1 1 1028 27 29 0 0 chr6 58106135 58106169 -91410868 + AT_rich Low_complexity Low_complexity 1 34 0 1 1028 623 317 31 7 chr6 58106250 58106539 -91410498 - Lx9 LINE L1 -171 7473 7178 1 1028 1492 273 72 20 chr6 58106544 58107086 -91409951 - Lx9 LINE L1 -685 6959 6390 1 1028 2046 196 99 2 chr6 58122400 58122876 -91394161 - RMER5 LTR ERV1 0 534 13 1 1028 749 81 26 26 chr6 58123346 58123499 -91393538 + (CAGAGA)n Simple_repeat Simple_repeat 3 155 0 1 1028 5675 163 29 38 chr6 58123533 58124824 -91392213 + L1Md_T LINE L1 99 1205 -5411 1 1028 36862 35 1 0 chr6 58124816 58129245 -91387792 + L1Md_T LINE L1 1157 5586 -297 1 1028 8204 54 0 0 chr6 58129245 58130240 -91386797 + L1Md_T LINE L1 5587 6581 -1 1 1028 33502 86 6 5 chr6 58131956 58137400 -91379637 + L1Md_F2 LINE L1 238 6004 -581 1 1028 2314 69 6 3 chr6 58137405 58137726 -91379311 - IAPEY2_LTR LTR ERVK -3 354 33 1 1028 4230 92 2 8 chr6 58137737 58138328 -91378709 + L1Md_F2 LINE L1 5999 6585 0 1 1028 911 142 7 0 chr6 58138329 58138477 -91378560 + B2_Mm2 SINE B2 9 157 -38 1 1028 275 154 0 37 chr6 58138481 58138535 -91378502 - RMER5 LTR ERV1 -9 525 474 1 1028 709 182 36 128 chr6 58139289 58139373 -91377664 + MT2A LTR ERVL 1 82 -451 1 1028 321 26 0 0 chr6 58139373 58139411 -91377626 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1028 709 182 36 128 chr6 58139411 58139521 -91377516 + MT2A LTR ERVL 83 176 -357 1 1028 270 0 0 0 chr6 58139522 58139552 -91377485 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1028 736 55 82 0 chr6 58139629 58139739 -91377298 + B2_Mm2 SINE B2 70 188 -7 1 1028 1891 233 48 12 chr6 58139734 58140238 -91376799 - RMER5 LTR ERV1 -9 525 4 1 1028 261 0 0 0 chr6 58140304 58140333 -91376704 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1028 329 43 0 21 chr6 58140496 58140544 -91376493 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1028 618 14 0 0 chr6 58140889 58140960 -91376077 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1028 498 96 0 0 chr6 58140961 58141034 -91376003 + (TATG)n Simple_repeat Simple_repeat 2 74 0 1 1028 733 245 40 45 chr6 58141078 58141248 -91375789 + MT2B LTR ERVL 381 542 -59 1 1028 432 0 0 0 chr6 58141248 58141296 -91375741 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1028 733 245 40 45 chr6 58141296 58141347 -91375690 + MT2B LTR ERVL 543 600 -1 1 1028 351 0 0 0 chr6 58141376 58141415 -91375622 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1028 1173 210 42 11 chr6 58141613 58141873 -91375164 + RMER5 LTR ERV1 23 290 -244 1 1028 2218 102 9 12 chr6 58141926 58142254 -91374783 - ORR1A4 LTR MaLR -2 327 1 1 1028 320 301 71 25 chr6 58142307 58142505 -91374532 - RMER17C LTR ERVK -81 329 123 1 1028 452 120 27 0 chr6 58142638 58142713 -91374324 + RMER5 LTR ERV1 458 534 0 1 1028 226 106 21 21 chr6 58143024 58143072 -91373965 + (CTTG)n Simple_repeat Simple_repeat 2 49 0 1 1028 241 213 132 13 chr6 58143422 58143498 -91373539 + URR1A DNA MER1_type 18 102 -124 1 1028 2891 169 43 50 chr6 58143497 58144617 -91372420 - RLTR13C2 LTR ERVK -18 1096 1 1 1028 579 152 17 43 chr6 58144617 58144664 -91372373 + URR1A DNA MER1_type 118 166 -60 1 1028 3137 68 2 2 chr6 58144664 58145060 -91371977 - MTA_Mm LTR MaLR 0 396 1 1 1028 7726 91 14 5 chr6 58145060 58146148 -91370889 - MTA_Mm-int LTR MaLR 0 1098 1 1 1028 3109 76 2 2 chr6 58146148 58146544 -91370493 - MTA_Mm LTR MaLR 0 396 1 1 1028 579 152 17 43 chr6 58146544 58146605 -91370432 + URR1A DNA MER1_type 167 223 -3 1 1028 325 155 0 2 chr6 58146665 58146717 -91370320 + Lx4B LINE L1 6859 6909 -149 1 1028 2526 126 126 2 chr6 58146720 58147149 -91369888 - RLTR45 LTR ERVK 0 482 1 1 1028 7805 143 12 17 chr6 58147149 58148555 -91368482 - RLTR45-int LTR ERVK -413 7804 6319 1 1028 2568 66 6 0 chr6 58148644 58148962 -91368075 - RLTR45-int LTR ERVK -5596 1648 1329 1 1028 437 230 56 56 chr6 58149348 58149491 -91367546 - RNERVK23-int LTR ERVK -1880 6337 6195 1 1028 1129 24 0 0 chr6 58149700 58149827 -91367210 - RLTR45-int LTR ERVK -6426 818 692 1 1028 1156 35 0 40 chr6 58150183 58150333 -91366704 - RLTR45-int LTR ERVK -6552 692 549 1 1028 3743 121 26 23 chr6 58151090 58151659 -91365378 - RLTR45-int LTR ERVK -6673 571 1 1 1028 2804 133 35 35 chr6 58151659 58152141 -91364896 - RLTR45 LTR ERVK 0 482 1 1 1028 628 212 20 14 chr6 58152147 58152295 -91364742 + Lx5 LINE L1 6891 7039 -11 1 1028 25 0 0 0 chr6 58152400 58152425 -91364612 + AT_rich Low_complexity Low_complexity 1 25 0 1 1028 857 181 6 0 chr6 58152476 58152653 -91364384 + CT-rich Low_complexity Low_complexity 1 178 0 1 1028 2508 267 12 18 chr6 58153242 58153895 -91363142 + MuRRS4-int LTR ERV1 3623 4271 -792 1 1028 282 29 0 0 chr6 58153907 58153942 -91363095 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1028 980 46 0 0 chr6 58153943 58154073 -91362964 - B1_Mus2 SINE Alu -12 135 6 1 1028 989 198 29 0 chr6 58154074 58154281 -91362756 + MuRRS4-int LTR ERV1 4809 5021 -42 1 1028 1792 86 0 39 chr6 58154282 58154562 -91362475 + LTRIS2 LTR ERV1 1 269 -295 1 1028 1854 221 71 66 chr6 58154636 58155316 -91361721 + RLTR22_Mur LTR ERVK 87 769 -1079 1 1028 2415 80 129 3 chr6 58155779 58156144 -91360893 + IAPLTR2a LTR ERVK 1 411 0 1 1028 3575 195 43 3 chr6 58156929 58157654 -91359383 - Lx2B LINE L1 0 7000 6247 1 1028 13193 147 18 73 chr6 58157654 58162594 -91354443 + Lx3B LINE L1 2757 6969 -4 1 1028 482 46 0 15 chr6 58162604 58162670 -91354367 + (TAAA)n Simple_repeat Simple_repeat 4 68 0 1 1028 1069 148 82 0 chr6 58162673 58162855 -91354182 + L1_Mur2 LINE L1 5289 5485 -392 1 1028 1367 171 109 11 chr6 58163369 58163652 -91353385 + L1_Mur2 LINE L1 5466 5776 -101 1 1028 538 81 0 0 chr6 58163652 58163739 -91353298 + L1_Mus3 LINE L1 6546 6632 -6 1 1028 1021 224 69 18 chr6 58163739 58163766 -91353271 + L1_Mur3 LINE L1 5778 5802 -78 1 1028 871 248 86 34 chr6 58164584 58164876 -91352161 - Lx4B LINE L1 0 7058 6752 1 1028 298 267 89 32 chr6 58164942 58165066 -91351971 + B3 SINE B2 86 216 0 1 1028 475 256 19 94 chr6 58166870 58167144 -91349893 - Lx9 LINE L1 -1409 6235 5871 1 1028 1045 225 78 36 chr6 58169286 58169673 -91347364 + L1_Rod LINE L1 1471 1873 -3974 1 1028 207 69 0 0 chr6 58169682 58169711 -91347326 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1028 1997 212 72 23 chr6 58169734 58170293 -91346744 + L1_Rod LINE L1 1967 2552 -3295 1 1028 903 67 0 0 chr6 58170430 58170549 -91346488 + (TTC)n Simple_repeat Simple_repeat 2 120 0 1 1028 444 185 38 3 chr6 58170871 58170980 -91346057 + MTC LTR MaLR 1 112 -309 1 1028 1390 235 81 3 chr6 58171021 58171341 -91345696 + MTC LTR MaLR 69 413 -8 1 1028 1633 238 118 19 chr6 58171344 58171591 -91345446 + MTC-int LTR MaLR 2 263 -995 1 1028 198 0 0 0 chr6 58171591 58171613 -91345424 + (CTGGGG)n Simple_repeat Simple_repeat 4 25 0 1 1028 1633 238 118 19 chr6 58171613 58171848 -91345189 + MTC-int LTR MaLR 264 532 -726 1 1028 363 261 65 7 chr6 58172057 58172196 -91344841 + MERVL_2A-int LTR ERVL 1205 1351 -4410 1 1028 378 259 12 0 chr6 58172204 58172285 -91344752 + B3A SINE B2 8 89 -109 1 1028 654 316 72 3 chr6 58172292 58172597 -91344440 + MERVL_2A-int LTR ERVL 1939 2264 -3497 1 1028 832 301 39 18 chr6 58172619 58172900 -91344137 - RMER5 LTR ERV1 -61 473 187 1 1028 6526 139 12 3 chr6 58173000 58173769 -91343268 - L1_Mm LINE L1 -1628 4255 3477 1 1028 180 0 0 0 chr6 58173769 58173789 -91343248 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1028 6526 139 12 3 chr6 58173789 58174115 -91342922 - L1_Mm LINE L1 -2407 3476 3150 1 1028 33707 89 9 5 chr6 58174112 58180224 -91336813 - L1Md_F2 LINE L1 -3 6579 443 1 1028 6739 112 1 3 chr6 58180213 58181256 -91335781 - MusHAL1 LINE L1 -747 1965 925 1 1028 422 227 0 0 chr6 58181252 58181340 -91335697 - L1_Mur2 LINE L1 -233 5644 5557 1 1028 1727 246 13 24 chr6 58181338 58181863 -91335174 + Lx4B LINE L1 6358 6874 -126 1 1028 417 324 89 28 chr6 58181979 58182404 -91334633 + L1M2 LINE L1 5302 5752 -560 1 1028 210 71 0 0 chr6 58182432 58182460 -91334577 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1028 1434 220 25 32 chr6 58182871 58183275 -91333762 + L1_Mur3 LINE L1 2575 2975 -2905 1 1028 7402 187 18 7 chr6 58183248 58184632 -91332405 + Lx4B LINE L1 5659 7058 0 1 1028 29 47 0 0 chr6 58184635 58184678 -91332359 + AT_rich Low_complexity Low_complexity 1 43 0 1 1028 1544 212 29 7 chr6 58184679 58185096 -91331941 + L1_Mur3 LINE L1 2784 3209 -2671 1 1028 441 0 0 0 chr6 58185096 58185145 -91331892 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1028 2129 282 11 26 chr6 58185398 58186073 -91330964 + RMER1C Other Other 527 1339 -3 1 1028 1700 202 80 28 chr6 58186098 58186572 -91330465 + L1_Mur3 LINE L1 3687 4183 -1697 1 1028 1171 251 160 87 chr6 58186572 58187065 -91329972 + MT2A LTR ERVL 5 533 0 1 1028 1700 202 80 28 chr6 58187065 58187088 -91329949 + L1_Mur3 LINE L1 4184 4209 -1671 1 1028 818 257 5 32 chr6 58187090 58187311 -91329726 - URR1B DNA MER1_type 0 225 11 1 1028 856 134 0 37 chr6 58187350 58187513 -91329524 - L1Md_F2 LINE L1 0 6582 6426 1 1028 13935 197 140 23 chr6 58187513 58191789 -91325248 - L1VL4 LINE L1 -356 5521 704 1 1028 693 247 6 6 chr6 58191844 58192007 -91325030 - MTC LTR MaLR -8 399 237 1 1028 189 147 0 0 chr6 58192007 58192041 -91324996 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 1 1028 279 0 0 0 chr6 58192043 58192074 -91324963 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1 1028 4194 172 123 6 chr6 58192074 58192442 -91324595 + RMER17B LTR ERVK 4 398 -560 1 1028 656 24 12 0 chr6 58192442 58192524 -91324513 + (TC)n Simple_repeat Simple_repeat 2 84 0 1 1028 4194 172 123 6 chr6 58192524 58193010 -91324027 + RMER17B LTR ERVK 399 957 -1 1 1028 5189 198 43 26 chr6 58193024 58195075 -91321962 - Lx2 LINE L1 -2 6995 4924 1 1028 331 100 20 0 chr6 58195076 58195126 -91321911 + PB1D9 SINE Alu 1 51 -69 1 1028 2141 101 82 0 chr6 58195128 58195456 -91321581 - IAPEY2_LTR LTR ERVK -2 355 1 1 128 5789 125 7 17 chr6 58195456 58196352 -91320685 - IAPEy-int LTR ERVK 0 7513 6627 1 1029 8893 130 21 8 chr6 58196332 58197733 -91319304 - IAPEY3-int LTR ERVK -6261 1419 1 1 1029 2062 119 19 3 chr6 58197733 58198053 -91318984 - IAPEY2_LTR LTR ERVK 0 357 33 1 1029 664 114 16 66 chr6 58198052 58198174 -91318863 + B1_Mm SINE Alu 32 147 0 1 1029 495 33 0 0 chr6 58198230 58198291 -91318746 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1029 19638 128 27 52 chr6 58198307 58204481 -91312556 - L1_Mus1 LINE L1 -2 6565 218 1 1029 702 242 82 10 chr6 58204484 58204512 -91312525 - MTC LTR MaLR -211 210 182 1 1029 1043 58 7 0 chr6 58204512 58204651 -91312386 + (GAAA)n Simple_repeat Simple_repeat 2 141 0 1 1029 702 242 82 10 chr6 58204651 58204818 -91312219 - MTC LTR MaLR -240 181 3 1 1029 1788 232 121 33 chr6 58204818 58204980 -91312057 + Lx7 LINE L1 5217 5398 -482 1 1029 989 92 34 40 chr6 58204980 58205128 -91311909 + B1_Mus1 SINE Alu 1 147 -1 2 1029 279 0 0 0 chr6 58205128 58205159 -91311878 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 1029 1788 252 134 21 chr6 58205159 58205831 -91311206 + Lx7 LINE L1 5399 6131 -1565 1 1029 22 70 0 0 chr6 58205942 58205985 -91311052 + AT_rich Low_complexity Low_complexity 1 43 0 2 1029 24 32 0 0 chr6 58208071 58208102 -91308935 + AT_rich Low_complexity Low_complexity 1 31 0 2 1029 751 269 31 71 chr6 58208371 58208763 -91308274 - Lx9 LINE L1 -1398 6246 5871 2 1029 563 276 81 25 chr6 58209371 58209568 -91307469 + B3 SINE B2 3 210 -6 2 1029 527 122 3 0 chr6 58210868 58210959 -91306078 - L1_Mus1 LINE L1 -111 6471 6381 2 1029 570 274 27 23 chr6 58210950 58211096 -91305941 - L1_Rod LINE L1 -4119 1728 1581 2 1029 3207 127 4 6 chr6 58211096 58211588 -91305449 - Lx LINE L1 -1 6653 6163 2 1029 570 274 27 23 chr6 58211588 58211703 -91305334 - L1_Rod LINE L1 -4267 1580 1467 2 1029 411 68 0 0 chr6 58213791 58213850 -91303187 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1029 25 0 0 0 chr6 58214990 58215015 -91302022 + AT_rich Low_complexity Low_complexity 1 25 0 2 1029 22 56 0 0 chr6 58216612 58216648 -91300389 + AT_rich Low_complexity Low_complexity 1 36 0 2 1029 596 263 43 21 chr6 58216946 58217179 -91299858 - Lx7 LINE L1 0 7696 7459 2 1029 2879 71 0 10 chr6 58217258 58217644 -91299393 + L1_Mus1 LINE L1 6185 6566 -1 2 1029 1849 158 20 3 chr6 58217712 58218055 -91298982 - Lx2 LINE L1 -709 6288 5940 2 1029 198 0 0 0 chr6 58218061 58218083 -91298954 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1029 38 0 0 0 chr6 58218138 58218176 -91298861 + AT_rich Low_complexity Low_complexity 1 38 0 2 1029 487 46 58 0 chr6 58218183 58218270 -91298767 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 1029 4004 267 26 19 chr6 58218342 58219457 -91297580 - Lx7 LINE L1 -453 7243 6121 2 1029 263 143 54 0 chr6 58219536 58219592 -91297445 + Lx2 LINE L1 5915 5973 -1024 2 1029 5062 218 29 26 chr6 58219592 58220738 -91296299 - MurERV4_19-int LTR ERVK -4631 1149 1 2 1029 2185 244 30 12 chr6 58220742 58221338 -91295699 - RMER19C LTR ERVK -4 607 1 2 1029 1931 197 83 4 chr6 58221364 58221844 -91295193 - L1_Mur3 LINE L1 -146 5734 5217 2 1029 1739 220 15 39 chr6 58221844 58222251 -91294786 + MTB_Mm LTR MaLR 1 397 -10 2 1029 896 228 53 13 chr6 58222257 58222559 -91294478 - L1_Mur3 LINE L1 -659 5221 4908 2 1029 345 48 159 0 chr6 58222564 58222627 -91294410 - Lx3_Mus LINE L1 -8 7001 6929 2 1029 256 195 50 38 chr6 58222638 58222718 -91294319 - L1_Rod LINE L1 -4301 1546 1466 2 1029 441 0 0 0 chr6 58223053 58223102 -91293935 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1029 405 123 0 0 chr6 58224140 58224205 -91292832 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 1029 399 291 41 49 chr6 58224563 58224818 -91292219 + Lx9 LINE L1 5871 6226 -1418 2 1029 22 0 0 0 chr6 58225539 58225561 -91291476 + AT_rich Low_complexity Low_complexity 1 22 0 2 1029 25 31 0 0 chr6 58225603 58225635 -91291402 + AT_rich Low_complexity Low_complexity 1 32 0 2 1029 213 246 0 17 chr6 58225670 58225728 -91291309 + (TATG)n Simple_repeat Simple_repeat 2 58 0 2 1029 254 281 16 0 chr6 58225845 58225909 -91291128 - B4 SINE B4 -137 155 91 2 1029 913 232 57 13 chr6 58225935 58226236 -91290801 - Lx7 LINE L1 -1 7695 7382 2 1029 529 134 12 25 chr6 58226241 58226402 -91290635 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 2 1029 2733 255 32 8 chr6 58226434 58227149 -91289888 - Lx7 LINE L1 -387 7309 6578 2 1029 1528 294 12 48 chr6 58227164 58227957 -91289080 - MERVL_2A-int LTR ERVL -2769 2992 2159 2 1029 625 293 44 139 chr6 58227994 58228311 -91288726 + RMER5 LTR ERV1 1 287 -247 2 1029 3695 96 27 51 chr6 58228458 58228561 -91288476 - RLTR45-int LTR ERVK -6673 571 496 2 1029 4522 54 5 0 chr6 58228561 58229133 -91287904 - L1Md_F2 LINE L1 0 6582 6008 2 1029 3695 96 27 51 chr6 58229133 58229614 -91287423 - RLTR45-int LTR ERVK -6749 495 1 2 1029 2359 136 24 141 chr6 58229614 58230160 -91286877 - RLTR45 LTR ERVK 0 482 1 2 1029 9321 120 10 1 chr6 58230160 58231629 -91285408 - L1_Mm LINE L1 -1234 4649 3167 2 1029 1037 203 135 43 chr6 58231630 58231934 -91285103 - IAPEY3_LTR LTR ERVK 0 332 1 2 1029 711 99 36 0 chr6 58231934 58232045 -91284992 - MMERVK10C-int LTR ERVK 0 7680 7566 2 1029 2600 51 0 0 chr6 58232062 58232374 -91284663 - RLTR10-int LTR ERVK -190 1797 1486 2 1029 2210 177 18 4 chr6 58232376 58232860 -91284177 - MMERVK10C-int LTR ERVK -149 7364 6849 2 1029 1821 82 0 0 chr6 58232879 58233110 -91283927 - MMERVK10C-int LTR ERVK -1882 5699 5469 2 1029 2744 276 44 33 chr6 58233083 58233930 -91283107 - IAPEY3-int LTR ERVK -6290 1390 535 2 1029 452 275 30 110 chr6 58233926 58234126 -91282911 - IAPEY3-int LTR ERVK -7494 186 3 2 1029 1100 225 95 34 chr6 58234138 58234432 -91282605 - RLTR46 LTR ERVK -8 312 1 2 1029 12012 147 15 4 chr6 58234432 58237186 -91279851 - L1Md_F LINE L1 -2712 3171 387 2 1029 947 176 22 0 chr6 58237189 58237371 -91279666 - Lx LINE L1 -26 6628 6443 2 1029 19560 166 27 20 chr6 58237369 58242118 -91274919 - L1_Mus4 LINE L1 -4 6632 1853 2 1029 2554 122 5 10 chr6 58242118 58242524 -91274513 - RLTR9E LTR ERVK 0 409 6 2 1029 983 116 0 19 chr6 58242540 58242698 -91274339 - L1VL2 LINE L1 -2056 1559 1405 2 1029 36738 71 6 16 chr6 58242698 58248896 -91268141 - L1Md_F3 LINE L1 -14 6570 446 2 1029 5315 148 17 20 chr6 58248912 58250267 -91266770 - L1VL2 LINE L1 -2196 1419 67 2 1029 1908 194 68 59 chr6 58250318 58250965 -91266072 - L1_Rod LINE L1 -3728 2119 1467 2 1029 237 151 0 0 chr6 58252680 58252733 -91264304 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1029 819 80 0 0 chr6 58253420 58253532 -91263505 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 2 1029 23 54 0 0 chr6 58254040 58254077 -91262960 + AT_rich Low_complexity Low_complexity 1 37 0 2 1029 5109 232 98 55 chr6 58254167 58254306 -91262731 + RLTR22_Mur LTR ERVK 9 144 -1704 2 1029 591 85 0 0 chr6 58254306 58254388 -91262649 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 1029 5109 232 98 55 chr6 58254388 58255086 -91261951 + RLTR22_Mur LTR ERVK 145 925 -923 2 1029 1172 68 0 0 chr6 58255086 58255233 -91261804 + B1_Mm SINE Alu 1 147 0 2 1029 5109 232 98 55 chr6 58255233 58256159 -91260878 + RLTR22_Mur LTR ERVK 926 1847 -1 2 1029 453 272 143 11 chr6 58256186 58256368 -91260669 - B3 SINE B2 -7 209 4 2 1029 627 267 43 43 chr6 58256788 58256999 -91260038 + Lx9 LINE L1 5871 6081 -1563 2 1029 21 0 0 0 chr6 58257064 58257085 -91259952 + AT_rich Low_complexity Low_complexity 1 21 0 2 1029 1410 121 13 4 chr6 58258426 58258658 -91258379 - L1_Mus3 LINE L1 0 6638 6405 2 1029 246 62 0 0 chr6 58259171 58259203 -91257834 + (TATG)n Simple_repeat Simple_repeat 3 34 0 2 1029 522 330 104 0 chr6 58259214 58259396 -91257641 - B4 SINE B4 -2 290 90 2 1029 4493 269 92 13 chr6 58259420 58260859 -91256178 - Lx7 LINE L1 0 7696 6145 2 1029 30704 102 14 2 chr6 58260860 58266278 -91250759 - L1Md_F2 LINE L1 -12 6570 1084 2 1029 244 248 125 25 chr6 58266288 58266408 -91250629 - L1M LINE L1 -900 5397 5266 2 1029 870 319 35 35 chr6 58266397 58266464 -91250573 - L1M2 LINE L1 -803 5340 5281 2 1029 210 37 0 0 chr6 58266464 58266491 -91250546 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1029 870 319 35 35 chr6 58266491 58266965 -91250072 - L1M2 LINE L1 -863 5280 4799 2 1029 535 277 52 33 chr6 58267232 58267445 -91249592 + RLTR45 LTR ERVK 265 481 -1 2 1029 328 254 0 0 chr6 58267461 58267532 -91249505 - L1_Mur3 LINE L1 -1133 4747 4677 2 1029 5604 85 4 9 chr6 58267976 58268788 -91248249 - RLTR13C2 LTR ERVK 0 983 1 2 1029 555 291 56 17 chr6 58268788 58269075 -91247962 - MERVL_2A-int LTR ERVL -2959 2802 2505 2 1029 288 308 106 92 chr6 58269352 58269570 -91247467 + RMER2 LTR ERV1 308 528 -39 2 1029 3736 152 39 55 chr6 58269581 58270560 -91246477 - RLTR13D1 LTR ERVK 0 1023 129 2 1029 1198 190 21 9 chr6 58270557 58270790 -91246247 + MTB_Mm LTR MaLR 162 397 -10 2 1029 731 192 70 28 chr6 58270804 58271018 -91246019 - L1_Mur3 LINE L1 -671 5209 4987 2 1029 483 266 21 41 chr6 58271018 58271163 -91245874 - RLTR43A LTR ERVK 0 364 223 2 1029 1004 255 13 4 chr6 58271163 58271399 -91245638 + RLTR24 LTR ERV1 292 529 0 2 1029 842 221 66 60 chr6 58271414 58271731 -91245306 - L1_Mur3 LINE L1 -1220 4660 4342 2 1029 1494 277 29 26 chr6 58272130 58272583 -91244454 + Lx7 LINE L1 6138 6591 -1105 2 1029 6405 174 23 3 chr6 58272581 58273784 -91243253 - L1_Mur1 LINE L1 -107 5779 4553 2 1029 2166 67 30 20 chr6 58273801 58274105 -91242932 - IAPLTR2b LTR ERVK -20 307 1 2 1029 7872 232 20 29 chr6 58274105 58276017 -91241020 - IAPLTR3-int LTR ERVK -20 6801 4906 2 1029 1959 78 12 0 chr6 58276014 58276271 -91240766 - IAPEY3-int LTR ERVK -5183 2497 2238 2 1029 3140 88 5 0 chr6 58276248 58276659 -91240378 - IAPEY3-int LTR ERVK -5698 1982 1570 2 1029 1962 132 9 15 chr6 58276656 58277043 -91239994 - IAPEY3-int LTR ERVK -5903 578 22 2 1029 2226 69 34 4 chr6 58277043 58277364 -91239673 - IAPLTR2b LTR ERVK 0 357 1 2 1029 1193 176 18 1 chr6 58277364 58277597 -91239440 - L1_Mur1 LINE L1 -1328 4555 4319 2 1029 6373 119 15 10 chr6 58277597 58278580 -91238457 - Lx3_Mus LINE L1 0 7009 6022 2 1029 1082 191 28 16 chr6 58278580 58278601 -91238436 - L1_Mur1 LINE L1 -1565 4318 4298 2 1029 6488 94 58 8 chr6 58278584 58279706 -91237331 + Lx3_Mus LINE L1 4750 5922 -1087 2 1029 1067 143 41 18 chr6 58279737 58279957 -91237080 + Lx3_Mus LINE L1 5910 6134 -875 2 1029 667 147 0 0 chr6 58279941 58280057 -91236980 - L1_Mur1 LINE L1 -1524 4362 4247 2 1029 946 229 18 50 chr6 58280137 58280358 -91236679 + MTC LTR MaLR 1 214 -207 2 1029 2838 9 22 0 chr6 58280366 58280685 -91236352 + IAPLTR3 LTR ERVK 1 326 0 2 1029 11559 40 7 21 chr6 58280685 58282179 -91234858 + IAPLTR3-int LTR ERVK 1 1472 -5349 2 1029 12222 22 0 0 chr6 58282177 58283621 -91233416 + IAPLTR3-int LTR ERVK 5304 6747 -74 2 1029 728 244 46 46 chr6 58283621 58283674 -91233363 + MTC LTR MaLR 147 202 -194 2 1029 2911 15 0 0 chr6 58283674 58284000 -91233037 + IAPLTR3 LTR ERVK 1 326 0 2 1029 922 231 20 10 chr6 58284000 58284197 -91232840 + MTC LTR MaLR 223 421 0 2 1029 1712 208 109 41 chr6 58284199 58284685 -91232352 + MTC-int LTR MaLR 5 523 -735 2 1029 3789 200 19 16 chr6 58284690 58285931 -91231106 + L1_Mur1 LINE L1 951 2204 -3682 2 1029 1223 189 8 8 chr6 58285928 58286189 -91230848 + Lx3_Mus LINE L1 6193 6453 -523 2 1029 4713 185 41 14 chr6 58286193 58286664 -91230373 - L1_Mur2 LINE L1 -164 5713 5236 2 1029 203 0 0 36 chr6 58286664 58286692 -91230345 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1029 4713 185 41 14 chr6 58286692 58287258 -91229779 - L1_Mur2 LINE L1 -642 5235 4647 2 1029 2064 239 97 8 chr6 58287271 58287994 -91229043 + Lx4B LINE L1 6176 6973 -27 2 1029 387 0 0 0 chr6 58287999 58288042 -91228995 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2 1029 262 227 91 0 chr6 58290639 58290705 -91226332 + L1_Rod LINE L1 1467 1538 -4309 2 1029 1540 168 54 18 chr6 58290706 58291022 -91226015 - RLTR22_Mus LTR ERVK 0 1808 1543 2 1029 611 84 19 0 chr6 58291067 58291174 -91225863 + L1_Mus1 LINE L1 6459 6567 0 2 1029 267 127 27 27 chr6 58291227 58291300 -91225737 + G-rich Low_complexity Low_complexity 5 77 0 2 1029 6006 69 9 1 chr6 58291395 58292206 -91224831 - RLTR22_Mus LTR ERVK -991 817 1 2 1029 2091 216 83 48 chr6 58292206 58293090 -91223947 + L1_Rod LINE L1 1534 2448 -3399 2 1029 207 0 0 0 chr6 58293180 58293203 -91223834 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1029 5152 178 36 46 chr6 58293203 58294415 -91222622 + L1_Mur2 LINE L1 4134 5333 -544 2 1029 372 206 45 36 chr6 58294415 58294526 -91222511 + MTC LTR MaLR 310 421 0 2 1029 540 174 18 9 chr6 58294525 58294635 -91222402 + MTC-int LTR MaLR 2 112 -1146 2 1029 1106 138 5 16 chr6 58294702 58294886 -91222151 - B2_Mm2 SINE B2 -3 192 11 2 1029 1633 231 49 49 chr6 58294915 58295366 -91221671 - RMER4B LTR ERVK -134 451 1 2 1029 290 214 62 133 chr6 58295367 58295480 -91221557 + MTC-int LTR MaLR 108 212 -1046 2 1029 2037 72 29 0 chr6 58295496 58295774 -91221263 - RLTR13C2 LTR ERVK 0 808 523 3 1029 36803 7 1 2 chr6 58295774 58301364 -91215673 + L1Md_A LINE L1 7 5586 -297 3 1029 9093 1 0 0 chr6 58301364 58302360 -91214677 + L1Md_A LINE L1 5587 6582 0 3 1029 4290 55 0 0 chr6 58302360 58302890 -91214147 - RLTR13C2 LTR ERVK -276 532 3 3 1029 5190 209 17 13 chr6 58302992 58303135 -91213902 - Lx4B LINE L1 -318 6740 6604 3 1029 3222 104 6 13 chr6 58303135 58303613 -91213424 + MT2C_Mm LTR ERVL 1 475 0 3 1029 6935 186 24 6 chr6 58303613 58305738 -91211299 - Lx4B LINE L1 -455 6603 4437 3 1029 21 36 0 0 chr6 58305739 58305767 -91211270 + AT_rich Low_complexity Low_complexity 1 28 0 3 1029 5095 162 60 8 chr6 58305771 58306140 -91210897 + L1_Mus1 LINE L1 217 561 -6077 3 1029 1786 36 32 0 chr6 58306140 58306361 -91210676 + L1Md_F3 LINE L1 6341 6568 -16 3 1029 387 0 0 0 chr6 58306368 58306411 -91210626 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1029 28447 105 37 11 chr6 58306411 58312463 -91204574 + L1_Mus1 LINE L1 403 6997 0 3 1029 8025 229 27 16 chr6 58314644 58317711 -91199326 + Lx5 LINE L1 3917 7031 -19 3 1029 462 65 0 0 chr6 58317712 58317774 -91199263 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 3 1029 7514 216 41 19 chr6 58317792 58319981 -91197056 + Lx6 LINE L1 2994 5229 -651 3 1029 306 261 0 32 chr6 58319990 58320085 -91196952 - RNLTR23 LTR ERVK 0 642 551 3 1029 863 76 0 0 chr6 58320090 58320208 -91196829 - L1_Mm LINE L1 -888 4995 4878 3 1029 4417 58 0 0 chr6 58320208 58320760 -91196277 + L1Md_F2 LINE L1 6019 6570 -12 3 1029 1664 220 32 10 chr6 58321126 58321565 -91195472 + Lx6 LINE L1 5236 5689 -1361 3 1029 2889 220 22 47 chr6 58321564 58322181 -91194856 + L1_Mus3 LINE L1 541 1158 -5499 3 1029 7768 129 19 4 chr6 58322181 58323413 -91193624 + Lx3_Mus LINE L1 5759 7009 0 3 1029 12136 168 228 7 chr6 58323413 58325044 -91191993 + L1_Mus3 LINE L1 1159 3488 -2395 3 1029 808 37 19 0 chr6 58325044 58325152 -91191885 + (GAAA)n Simple_repeat Simple_repeat 2 111 0 3 1029 12136 166 236 6 chr6 58325152 58326741 -91190296 + L1_Mus3 LINE L1 3489 5086 -797 3 128 26021 23 2 2 chr6 58326758 58328973 -91188064 - L1Md_T LINE L1 0 6582 4369 3 1030 3473 28 0 0 chr6 58328973 58329369 -91187668 + MTA_Mm LTR MaLR 1 396 0 3 1030 9415 24 3 1 chr6 58329369 58330465 -91186572 + MTA_Mm-int LTR MaLR 1 1098 0 3 1030 3511 25 0 0 chr6 58330465 58330861 -91186176 + MTA_Mm LTR MaLR 1 396 0 3 1030 26021 16 2 3 chr6 58330861 58332526 -91184511 - L1Md_T LINE L1 -1515 4368 2705 3 1030 6057 134 14 19 chr6 58332502 58334077 -91182960 + L1_Mus3 LINE L1 5076 6632 -6 3 1030 1249 280 58 35 chr6 58334124 58334283 -91182754 + Lx6 LINE L1 5691 5843 -1617 3 1030 3575 13 2 0 chr6 58334283 58334678 -91182359 + MTA_Mm LTR MaLR 1 396 0 3 1030 9525 16 4 1 chr6 58334678 58335773 -91181264 + MTA_Mm-int LTR MaLR 1 1098 0 3 1030 3589 10 2 0 chr6 58335773 58336168 -91180869 + MTA_Mm LTR MaLR 1 396 0 3 1030 1249 280 58 35 chr6 58336168 58336576 -91180461 + Lx6 LINE L1 5844 6271 -1189 3 1030 796 280 95 16 chr6 58336580 58336951 -91180086 + Lx6 LINE L1 6479 6886 -574 3 1030 246 125 0 0 chr6 58337579 58337627 -91179410 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1030 3588 148 20 2 chr6 58338417 58339216 -91177821 - Lx2 LINE L1 -755 6242 5430 3 1030 528 284 38 38 chr6 58339496 58339763 -91177274 + Lx9 LINE L1 5878 6144 -1500 3 1030 230 189 19 19 chr6 58340169 58340223 -91176814 + L1_Rod LINE L1 1466 1519 -4328 3 1030 7355 196 19 106 chr6 58340221 58341044 -91175993 + Lx5 LINE L1 3917 4724 -1153 3 1030 513 32 0 0 chr6 58341044 58341107 -91175930 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 3 1030 7355 219 50 63 chr6 58341107 58343508 -91173529 + Lx5 LINE L1 4725 7036 -14 3 1030 216 0 0 0 chr6 58343508 58343532 -91173505 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 3 1030 4600 247 87 12 chr6 58343532 58343545 -91173492 + Lx5 LINE L1 7037 7049 -1 3 1030 310 237 34 8 chr6 58343558 58343677 -91173360 + MusHAL1 LINE L1 1817 1938 -774 3 1030 1935 184 43 10 chr6 58344484 58344999 -91172038 + Lx6 LINE L1 3112 3643 -2237 3 1030 32037 78 6 2 chr6 58345034 58351198 -91165839 - L1Md_F2 LINE L1 -1 6581 391 3 1030 7606 212 88 21 chr6 58351223 58353646 -91163391 + Lx6 LINE L1 3658 6264 -786 3 1030 4990 71 27 3 chr6 58353646 58354312 -91162725 - L1Md_F2 LINE L1 -12 6570 5889 3 1030 2097 291 108 19 chr6 58354312 58355156 -91161881 + Lx6 LINE L1 6265 7403 -57 3 1030 1322 137 18 18 chr6 58355517 58355740 -91161297 - Lx2 LINE L1 0 6997 6775 3 1030 1505 121 0 0 chr6 58355740 58355971 -91161066 - Lx2 LINE L1 -354 6643 6413 3 1030 392 261 105 23 chr6 58356010 58356143 -91160894 + B3 SINE B2 73 216 0 3 1030 980 174 82 0 chr6 58356170 58356377 -91160660 - Lx3B LINE L1 -2 6971 6748 3 1030 630 300 24 52 chr6 58358208 58358591 -91158446 - Lx9 LINE L1 -1398 6246 5875 3 1030 591 273 68 88 chr6 58359215 58359246 -91157791 + B3 SINE B2 16 39 -177 3 1030 4126 99 2 5 chr6 58359246 58359824 -91157213 - L1_Mus1 LINE L1 0 6567 5992 3 1030 591 273 68 88 chr6 58359824 58359997 -91157040 + B3 SINE B2 40 216 0 3 1030 369 0 0 0 chr6 58360880 58360921 -91156116 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1030 270 277 139 69 chr6 58360931 58361032 -91156005 - PB1D7 SINE Alu -12 108 1 3 1030 2251 179 44 6 chr6 58363123 58363622 -91153415 + Lx3_Mus LINE L1 3923 4440 -1437 3 1030 9076 99 21 13 chr6 58363621 58365186 -91151851 + Lx3_Mus LINE L1 5437 7008 -1 3 1030 5882 199 43 36 chr6 58365188 58366903 -91150134 + Lx3_Mus LINE L1 5281 6991 -18 3 1030 2978 105 11 4 chr6 58366903 58367363 -91149674 - L1_Mur1 LINE L1 -73 5813 5351 3 1030 5452 131 17 10 chr6 58367347 58367464 -91149573 - L1_Mus4 LINE L1 -7 6629 6520 3 1030 243 0 0 0 chr6 58367464 58367491 -91149546 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 3 1030 5452 131 17 10 chr6 58367491 58368308 -91148729 - L1_Mus4 LINE L1 -117 6519 5689 3 1030 3915 131 46 22 chr6 58368311 58369024 -91148013 + RMER17D2 LTR ERVK 80 809 0 3 1030 22351 160 47 9 chr6 58369073 58374517 -91142520 - L1_Mur1 LINE L1 -200 5686 33 3 1030 378 0 0 0 chr6 58374640 58374682 -91142355 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1030 39387 7 0 1 chr6 58374794 58381561 -91135476 - L1Md_A LINE L1 0 6582 1 3 1030 589 182 24 16 chr6 58381883 58382006 -91135031 - RLTR25A LTR ERVK -577 451 328 3 1030 183 114 0 0 chr6 58382127 58382162 -91134875 + (TTTTTA)n Simple_repeat Simple_repeat 1 35 0 3 1030 1780 112 196 9 chr6 58382197 58382332 -91134705 - Lx3_Mus LINE L1 -812 6197 6052 3 1030 408 40 0 0 chr6 58382332 58382382 -91134655 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 3 1030 1780 112 196 9 chr6 58382382 58382493 -91134544 - Lx3_Mus LINE L1 -958 6051 5924 3 1030 180 0 0 0 chr6 58382493 58382513 -91134524 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 3 1030 1780 112 196 9 chr6 58382513 58382606 -91134431 - Lx3_Mus LINE L1 -1086 5923 5795 3 1030 2899 87 5 0 chr6 58382605 58383009 -91134028 + Lx3_Mus LINE L1 5379 5784 -102 3 1030 1263 276 38 13 chr6 58383009 58383324 -91133713 - RLTR25A LTR ERVK -773 330 8 3 1030 678 221 70 0 chr6 58383325 58383483 -91133554 + Lx7 LINE L1 6752 6920 -776 3 1030 843 223 44 56 chr6 58383540 58383878 -91133159 + Lx7 LINE L1 7363 7696 0 3 1030 507 333 60 16 chr6 58383893 58384076 -91132961 + B4 SINE B4 82 272 -20 3 1030 459 246 47 16 chr6 58384579 58384707 -91132330 + B3 SINE B2 78 209 -7 3 1030 1129 122 0 0 chr6 58384728 58384892 -91132145 - B2_Mm2 SINE B2 -31 164 1 3 1030 582 302 20 71 chr6 58386598 58386990 -91130047 - Lx9 LINE L1 -1398 6246 5875 3 1030 279 0 0 0 chr6 58388894 58388925 -91128112 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1030 4319 179 44 27 chr6 58388941 58389887 -91127150 + RLTR13A2 LTR ERVK 8 952 -6 3 1030 333 284 224 29 chr6 58389887 58390061 -91126976 + B3 SINE B2 4 211 -5 3 1030 23 0 0 0 chr6 58390180 58390203 -91126834 + AT_rich Low_complexity Low_complexity 1 23 0 3 1030 396 0 0 0 chr6 58391393 58391437 -91125600 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1030 537 16 0 0 chr6 58391824 58391886 -91125151 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1030 415 284 0 43 chr6 58391916 58392008 -91125029 - PB1D10 SINE Alu -29 88 1 3 1030 784 201 109 25 chr6 58393954 58394229 -91122808 + L1_Rod LINE L1 1466 1763 -4084 3 1030 3945 114 11 21 chr6 58394292 58395297 -91121740 - L1Md_A LINE L1 -4261 1622 631 3 1030 3363 72 2 19 chr6 58395338 58395806 -91121231 + L1Md_F2 LINE L1 6122 6581 -1 3 1030 25 0 0 0 chr6 58395847 58395872 -91121165 + AT_rich Low_complexity Low_complexity 1 25 0 3 1030 915 263 121 22 chr6 58395878 58396193 -91120844 + MTC LTR MaLR 68 413 -8 3 1030 428 236 27 10 chr6 58396196 58396328 -91120709 + MTC-int LTR MaLR 2 134 -1236 3 1030 429 127 0 0 chr6 58396328 58396407 -91120630 - L1_Mus1 LINE L1 -589 5978 5900 3 1030 301 51 0 0 chr6 58396403 58396442 -91120595 - Lx3C LINE L1 -1202 5774 5736 3 1030 1909 173 5 27 chr6 58396443 58396812 -91120225 - Lx3C LINE L1 -366 5511 5151 3 1030 989 68 30 0 chr6 58396812 58396944 -91120093 + B2_Mm2 SINE B2 26 161 -34 3 1030 302 167 0 108 chr6 58396944 58397018 -91120019 - Lx3C LINE L1 -736 5141 5076 3 1030 4226 201 54 31 chr6 58397002 58398072 -91118965 + Lx2B LINE L1 5960 7007 -1 3 1030 805 138 12 50 chr6 58398076 58398236 -91118801 + MTC-int LTR MaLR 93 246 -1012 3 1030 466 199 72 14 chr6 58398237 58398375 -91118662 + Lx LINE L1 6508 6653 -1 3 1030 1530 227 28 0 chr6 58398383 58398700 -91118337 + MTC-int LTR MaLR 251 576 -682 3 1030 845 254 14 28 chr6 58399005 58399220 -91117817 - RMER5 LTR ERV1 -152 382 171 3 1030 668 202 116 30 chr6 58399222 58399421 -91117616 - RMER5 LTR ERV1 -316 218 3 3 1030 605 281 21 21 chr6 58399460 58399649 -91117388 + MERVL_2A-int LTR ERVL 2261 2449 -3312 3 1030 342 314 88 80 chr6 58399665 58399914 -91117123 - RMER2 LTR ERV1 -27 540 290 3 1030 960 293 36 3 chr6 58400181 58400540 -91116497 + MERVL_2A-int LTR ERVL 2505 2875 -2886 3 1030 928 310 96 15 chr6 58400925 58401013 -91116024 + L1M2 LINE L1 4708 4826 -1317 3 1030 184 29 114 0 chr6 58401013 58401048 -91115989 + (AATAG)n Simple_repeat Simple_repeat 2 40 0 3 1030 928 310 96 15 chr6 58401048 58401478 -91115559 + L1M2 LINE L1 4827 5271 -872 3 1030 198 0 0 0 chr6 58401478 58401500 -91115537 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1030 928 310 96 15 chr6 58401500 58401566 -91115471 + L1M2 LINE L1 5272 5338 -805 3 1030 520 322 64 30 chr6 58401555 58401994 -91115043 + L1M2 LINE L1 5266 5719 -593 3 1030 2551 253 32 24 chr6 58401993 58402444 -91114593 + Lx7 LINE L1 6091 6544 -1152 3 1030 396 0 0 0 chr6 58402444 58402488 -91114549 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 3 1030 2551 253 32 24 chr6 58402488 58402701 -91114336 + Lx7 LINE L1 6545 6760 -936 3 1030 1960 47 8 26 chr6 58402704 58402968 -91114069 - ORR1A0 LTR MaLR 0 346 88 3 1030 2740 258 99 11 chr6 58402968 58403800 -91113237 + Lx7 LINE L1 6792 7696 0 3 1030 577 306 117 0 chr6 58403820 58404000 -91113037 + B4 SINE B4 90 290 -2 3 1030 372 43 0 0 chr6 58404013 58404059 -91112978 + (CATA)n Simple_repeat Simple_repeat 1 46 0 3 1030 368 171 0 13 chr6 58404295 58404372 -91112665 - RLTRETN_Mm LTR ERVK 0 322 247 3 1030 1461 95 13 17 chr6 58404655 58404890 -91112147 + L1_Mus3 LINE L1 6405 6638 0 3 1030 409 295 74 0 chr6 58404938 58405060 -91111977 + B3 SINE B2 86 216 0 3 1030 554 282 5 60 chr6 58406278 58406493 -91110544 - Lx9 LINE L1 -1563 6081 5879 3 1030 563 278 105 12 chr6 58406925 58407096 -91109941 + B3 SINE B2 4 190 -26 3 1030 558 43 0 0 chr6 58407096 58407165 -91109872 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1030 4213 245 88 42 chr6 58407194 58408679 -91108358 - RLTR22_Mur LTR ERVK 0 1848 297 3 1030 7712 66 1 2 chr6 58408690 58410078 -91106959 - L1Md_F2 LINE L1 -15 6567 5182 3 1030 4256 49 2 0 chr6 58410117 58410629 -91106408 + L1Md_F2 LINE L1 6056 6568 -14 3 1030 813 221 26 55 chr6 58410646 58410762 -91106275 - RLTR22_Mur LTR ERVK -1035 369 188 3 1030 468 0 0 0 chr6 58410762 58410814 -91106223 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 3 1030 813 208 19 62 chr6 58410814 58410925 -91106112 - RLTR22_Mur LTR ERVK -1661 187 83 3 1030 1289 81 76 0 chr6 58411625 58411810 -91105227 + L1_Mus2 LINE L1 6368 6566 0 3 1030 1575 214 85 71 chr6 58413216 58413860 -91103177 + L1_Rod LINE L1 1467 2119 -3728 3 1030 3823 180 33 25 chr6 58413911 58414663 -91102374 + L1VL2 LINE L1 67 824 -5511 4 1030 17606 165 92 21 chr6 58414662 58419914 -91097123 + L1Md_F LINE L1 1 5589 -297 4 1030 8377 34 1 1 chr6 58419914 58420910 -91096127 + L1Md_F3 LINE L1 5587 6582 -2 4 1030 279 0 0 0 chr6 58421441 58421472 -91095565 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 4 1030 913 212 60 40 chr6 58421489 58421740 -91095297 - Lx4B LINE L1 -51 7007 6752 4 1030 27 62 0 0 chr6 58421909 58421957 -91095080 + AT_rich Low_complexity Low_complexity 1 48 0 4 1030 443 275 40 40 chr6 58423720 58423989 -91093048 - Lx9 LINE L1 -1408 6236 5871 4 1030 609 162 0 0 chr6 58424347 58424458 -91092579 + (TA)n Simple_repeat Simple_repeat 1 111 0 4 1030 314 118 0 68 chr6 58425930 58426003 -91091034 + Lx3_Mus LINE L1 6929 6996 -13 4 1030 1065 222 39 13 chr6 58426016 58426322 -91090715 + L1_Mur3 LINE L1 4908 5221 -659 4 1030 1480 203 51 42 chr6 58426322 58426677 -91090360 - MTB_Mm LTR MaLR 0 407 50 4 1030 334 191 29 14 chr6 58427010 58427079 -91089958 - MTB_Mm LTR MaLR -337 70 1 4 1030 435 143 13 0 chr6 58427079 58427156 -91089881 + L1_Mur3 LINE L1 5217 5294 -586 4 1030 1085 90 0 7 chr6 58427160 58427305 -91089732 + B1_Mus2 SINE Alu 2 145 -2 4 1030 1628 207 98 9 chr6 58427315 58427764 -91089273 + L1_Mur3 LINE L1 5246 5734 -146 4 1030 2472 235 32 12 chr6 58427790 58428384 -91088653 + RMER19C LTR ERVK 1 606 -5 4 1030 5024 187 28 22 chr6 58428389 58429374 -91087663 + MurERV4_19-int LTR ERVK 1 991 -4789 4 1030 14664 159 50 14 chr6 58429395 58432811 -91084226 + MurERV4_19-int LTR ERVK 1123 4660 -1120 4 1030 1164 272 7 7 chr6 58432901 58433193 -91083844 - RMER5 LTR ERV1 -78 456 165 4 1030 677 254 50 41 chr6 58433187 58433405 -91083632 - RMER5 LTR ERV1 -314 220 1 4 1030 788 285 4 64 chr6 58433443 58433724 -91083313 + MERVL_2A-int LTR ERVL 2262 2525 -3236 4 1030 657 282 37 70 chr6 58434065 58434336 -91082701 - RLTR11B LTR ERVK -191 262 1 4 1030 267 301 29 0 chr6 58434338 58434441 -91082596 + MERVL_2A-int LTR ERVL 2544 2649 -3112 4 1030 3099 178 75 34 chr6 58434441 58434590 -91082447 + Lx3C LINE L1 4654 4843 -1043 4 1030 723 12 0 0 chr6 58434590 58434674 -91082363 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 1030 3099 148 38 32 chr6 58434674 58435119 -91081918 + Lx3C LINE L1 4833 5290 -587 4 1030 8588 7 0 0 chr6 58435119 58436077 -91080960 + L1Md_A LINE L1 5625 6582 0 4 1030 3099 148 38 32 chr6 58436077 58436211 -91080826 + Lx3C LINE L1 5291 5415 -462 4 1030 9563 195 31 8 chr6 58436222 58439164 -91077873 - Lx3C LINE L1 0 6976 3960 4 1030 3585 191 36 0 chr6 58439165 58439960 -91077077 + Lx3C LINE L1 5521 6345 -631 4 1030 4176 159 23 7 chr6 58439960 58440690 -91076347 - Lx2 LINE L1 -341 6656 5915 4 1030 1726 262 16 7 chr6 58440780 58441229 -91075808 + Lx7 LINE L1 6123 6575 -1121 4 1030 474 182 10 0 chr6 58441230 58441329 -91075708 + Lx7 LINE L1 7597 7696 0 4 1030 448 344 54 54 chr6 58441350 58441553 -91075484 + B4 SINE B4 87 289 -3 4 1030 3045 137 0 8 chr6 58441833 58442326 -91074711 - L1_Mm LINE L1 -1035 4848 4360 4 1030 6554 114 52 22 chr6 58442395 58444131 -91072906 + L1_Mus3 LINE L1 4854 6638 0 4 1030 26 30 0 0 chr6 58444285 58444318 -91072719 + AT_rich Low_complexity Low_complexity 1 33 0 4 1030 738 226 84 67 chr6 58446103 58446449 -91070588 - Lx9 LINE L1 -1422 6222 5871 4 1030 334 324 0 0 chr6 58447082 58447187 -91069850 + B3 SINE B2 23 127 -89 4 1030 27 73 0 0 chr6 58447395 58447450 -91069587 + AT_rich Low_complexity Low_complexity 1 55 0 4 1030 225 0 0 0 chr6 58448610 58448635 -91068402 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1030 342 0 0 0 chr6 58449064 58449102 -91067935 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1030 378 0 0 0 chr6 58449590 58449632 -91067405 + (TTA)n Simple_repeat Simple_repeat 1 42 0 4 1030 4460 61 5 5 chr6 58449632 58450190 -91066847 - L1Md_F2 LINE L1 -23 6559 6002 4 1030 2432 241 58 79 chr6 58451514 58451598 -91065439 + L1_Rod LINE L1 1495 1574 -4273 4 1030 2906 153 4 6 chr6 58451598 58452084 -91064953 + Lx LINE L1 6163 6647 -7 4 1030 2432 241 58 79 chr6 58452084 58453024 -91064013 + L1_Rod LINE L1 1575 2498 -3349 4 1030 5314 94 69 1 chr6 58453062 58453815 -91063222 - Lx3_Mus LINE L1 0 7009 6206 4 1030 1365 180 8 0 chr6 58453820 58454064 -91062973 - L1Md_F LINE L1 -5646 873 628 4 1030 401 259 98 84 chr6 58454036 58454251 -91062786 - L1Md_F LINE L1 -5814 705 295 4 1030 476 229 30 111 chr6 58454251 58454476 -91062561 - L1VL1 LINE L1 -5981 437 215 4 1030 617 224 139 12 chr6 58455027 58455285 -91061752 - RLTR22_Mur LTR ERVK -1079 769 479 4 1030 12437 169 6 9 chr6 58455287 58457542 -91059495 + L1_Mm LINE L1 3599 5847 -36 4 1030 1791 134 22 16 chr6 58457543 58457862 -91059175 - MTB LTR MaLR 0 400 80 4 128 2605 187 1 0 chr6 58457863 58458376 -91058661 + Lx3C LINE L1 5548 6059 -917 4 1031 20195 19 0 0 chr6 58458379 58460678 -91056359 + L1Md_T LINE L1 3288 5586 -297 4 1031 8552 31 3 2 chr6 58460678 58461673 -91055364 + L1Md_T LINE L1 5587 6582 0 4 1031 1206 205 22 7 chr6 58461680 58461955 -91055082 + Lx3C LINE L1 6067 6345 -631 4 1031 498 183 28 19 chr6 58461977 58462083 -91054954 - PB1D10 SINE Alu 0 117 11 4 1031 310 263 20 29 chr6 58461998 58462100 -91054937 - ID_B1 SINE B4 -48 176 76 4 1031 571 298 82 56 chr6 58463109 58463376 -91053661 - B4 SINE B4 -16 276 3 4 1031 3035 173 29 9 chr6 58463548 58464130 -91052907 - Lx4B LINE L1 -1 7057 6464 4 1031 8309 30 0 1 chr6 58464128 58465078 -91051959 + L1Md_F2 LINE L1 5632 6580 -2 4 1031 2055 201 32 20 chr6 58465081 58465523 -91051514 - Lx4B LINE L1 -578 6480 6034 4 1031 1139 82 0 0 chr6 58465672 58465818 -91051219 + L1Md_F2 LINE L1 6323 6468 -114 4 1031 239 282 106 25 chr6 58466194 58466354 -91050683 - MIR SINE MIR -22 240 68 4 1031 555 16 0 0 chr6 58466605 58466669 -91050368 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1031 234 0 0 0 chr6 58467274 58467300 -91049737 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1031 465 19 0 0 chr6 58467300 58467353 -91049684 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1031 1337 203 36 77 chr6 58467593 58467656 -91049381 - ORR1D1 LTR MaLR 0 374 329 4 1031 3191 38 32 20 chr6 58467656 58468062 -91048975 + IAPLTR2a LTR ERVK 1 411 0 4 1031 1337 203 36 77 chr6 58468062 58468388 -91048649 - ORR1D1 LTR MaLR -46 328 1 4 1031 818 281 10 0 chr6 58469582 58469778 -91047259 + B4A SINE B4 91 288 -4 4 1031 200 205 0 0 chr6 58469788 58469827 -91047210 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1031 370 344 142 26 chr6 58470304 58471243 -91045794 - L2a LINE L2 -86 3340 2293 4 1031 596 292 20 30 chr6 58472424 58472622 -91044415 - B3A SINE B2 0 198 3 4 1031 27 29 0 0 chr6 58473254 58473288 -91043749 + AT_rich Low_complexity Low_complexity 1 34 0 4 1031 884 294 10 35 chr6 58473352 58473666 -91043371 - Lx9 LINE L1 -161 7483 7178 4 1031 1423 290 113 10 chr6 58473687 58474189 -91042848 - Lx9 LINE L1 -712 6932 6379 4 1031 288 404 0 0 chr6 58478290 58478399 -91038638 + polypyrimidine Low_complexity Low_complexity 1 109 0 4 1031 537 218 11 29 chr6 58478500 58478675 -91038362 + C-rich Low_complexity Low_complexity 1 172 0 4 1031 321 381 0 0 chr6 58478675 58478801 -91038236 + CT-rich Low_complexity Low_complexity 3 128 0 4 1031 240 261 29 14 chr6 58478829 58478899 -91038138 + GA-rich Low_complexity Low_complexity 4 74 0 4 1031 201 175 31 31 chr6 58478905 58478970 -91038067 + G-rich Low_complexity Low_complexity 2 66 0 4 1031 391 290 14 51 chr6 58478984 58479122 -91037915 + C-rich Low_complexity Low_complexity 5 137 0 4 1031 369 340 0 0 chr6 58479155 58479255 -91037782 + G-rich Low_complexity Low_complexity 1 100 0 4 1031 220 312 16 0 chr6 58479278 58479342 -91037695 + GA-rich Low_complexity Low_complexity 3 67 0 4 1031 257 374 0 0 chr6 58479352 58479435 -91037602 + C-rich Low_complexity Low_complexity 3 85 0 4 1031 313 133 0 82 chr6 58479512 58479610 -91037427 + G-rich Low_complexity Low_complexity 1 90 0 4 1031 336 330 0 42 chr6 58479617 58479737 -91037300 + C-rich Low_complexity Low_complexity 5 119 0 4 1031 388 320 16 16 chr6 58479768 58479895 -91037142 + G-rich Low_complexity Low_complexity 2 128 0 4 1031 253 304 0 14 chr6 58479918 58479988 -91037049 + G-rich Low_complexity Low_complexity 6 74 0 4 1031 203 295 11 0 chr6 58480023 58480118 -91036919 + C-rich Low_complexity Low_complexity 2 97 0 4 1031 376 322 0 113 chr6 58480167 58480370 -91036667 + G-rich Low_complexity Low_complexity 1 180 0 4 1031 332 330 0 11 chr6 58480387 58480479 -91036558 + C-rich Low_complexity Low_complexity 5 95 0 4 1031 386 336 7 28 chr6 58480509 58480650 -91036387 + G-rich Low_complexity Low_complexity 1 138 0 4 1031 2617 57 48 3 chr6 58480670 58481041 -91035996 + MTA_Mm LTR MaLR 1 388 -8 4 1031 279 269 0 60 chr6 58481054 58481137 -91035900 + G-rich Low_complexity Low_complexity 6 83 0 4 1031 346 336 0 28 chr6 58481142 58481249 -91035788 + C-rich Low_complexity Low_complexity 2 105 0 4 1031 226 286 0 18 chr6 58481282 58481339 -91035698 + G-rich Low_complexity Low_complexity 5 60 0 4 1031 334 337 0 10 chr6 58481400 58481502 -91035535 + GA-rich Low_complexity Low_complexity 4 104 0 4 1031 379 137 0 129 chr6 58481582 58481775 -91035262 + G-rich Low_complexity Low_complexity 2 169 0 4 1031 816 110 8 0 chr6 58483749 58483867 -91033170 - RLTR13A LTR ERVK 0 855 737 4 1031 1320 290 33 37 chr6 58483867 58484989 -91032048 - ETnERV3-int LTR ERVK -5560 1693 186 4 1031 300 280 10 0 chr6 58485369 58485469 -91031568 - ETnERV3-int LTR ERVK -6874 379 279 4 1031 1046 154 11 16 chr6 58485541 58485726 -91031311 - ETnERV3-int LTR ERVK -5622 186 3 4 1031 7507 52 29 5 chr6 58485728 58486664 -91030373 - RLTR13A2 LTR ERVK 0 958 1 4 1031 746 226 80 25 chr6 58486752 58486952 -91030085 + B3 SINE B2 5 215 -1 4 1031 717 242 7 0 chr6 58486954 58487103 -91029934 + B1_Mur4 SINE Alu 1 150 0 4 1031 22 35 0 0 chr6 58487118 58487147 -91029890 + AT_rich Low_complexity Low_complexity 1 29 0 4 1031 2062 179 24 5 chr6 58487544 58487915 -91029122 + ORR1C1 LTR MaLR 1 378 0 4 1031 2942 64 15 13 chr6 58488777 58489172 -91027865 - MTA_Mm LTR MaLR 0 396 1 4 1031 21 71 0 0 chr6 58489400 58489442 -91027595 + AT_rich Low_complexity Low_complexity 1 42 0 4 1031 912 180 122 10 chr6 58490452 58490648 -91026389 - URR1A DNA MER1_type -6 220 3 4 1031 819 0 0 0 chr6 58490941 58491032 -91026005 + (TTC)n Simple_repeat Simple_repeat 1 91 0 4 1031 1106 209 19 0 chr6 58491058 58491264 -91025773 + B3 SINE B2 2 211 -5 4 1031 22 35 0 0 chr6 58491293 58491322 -91025715 + AT_rich Low_complexity Low_complexity 1 29 0 4 1031 372 187 53 0 chr6 58491729 58491804 -91025233 - Lx6 LINE L1 -1237 6223 6145 4 1031 417 39 0 0 chr6 58491810 58491861 -91025176 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1031 873 214 35 10 chr6 58492138 58492341 -91024696 + MTC LTR MaLR 214 421 0 5 1031 563 208 115 0 chr6 58493942 58494072 -91022965 - B1F SINE Alu -1 148 4 5 1031 21 57 0 0 chr6 58494072 58494107 -91022930 + AT_rich Low_complexity Low_complexity 1 35 0 5 1031 956 151 6 0 chr6 58494138 58494304 -91022733 - URR1A DNA MER1_type -2 224 58 5 1031 441 0 0 0 chr6 58494718 58494767 -91022270 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1031 495 48 0 0 chr6 58494767 58494828 -91022209 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1031 453 81 0 0 chr6 58494896 58494958 -91022079 + (T)n Simple_repeat Simple_repeat 1 62 0 5 1031 1336 225 31 38 chr6 58494970 58495289 -91021748 - RLTR17 LTR ERVK 0 692 376 5 1031 7020 50 11 6 chr6 58495290 58496244 -91020793 - RLTR13A2 LTR ERVK 0 958 1 5 1031 244 83 0 0 chr6 58496244 58496280 -91020757 - RLTR17 LTR ERVK -312 380 345 5 1031 1084 214 19 0 chr6 58496489 58496695 -91020342 + B3 SINE B2 2 211 -5 5 1031 30 27 0 0 chr6 58496882 58496919 -91020118 + AT_rich Low_complexity Low_complexity 1 37 0 5 1031 380 187 53 0 chr6 58497438 58497513 -91019524 - Lx6 LINE L1 -1237 6223 6145 5 1031 257 286 0 0 chr6 58497988 58498058 -91018979 + (TATG)n Simple_repeat Simple_repeat 3 72 0 5 1031 324 326 0 0 chr6 58498109 58498201 -91018836 - B3 SINE B2 -33 183 92 5 1031 535 291 53 7 chr6 58498273 58498425 -91018612 - B3 SINE B2 -5 211 53 5 1031 324 310 11 0 chr6 58498417 58498504 -91018533 + RSINE1 SINE B4 54 141 -24 5 1031 315 354 13 89 chr6 58498540 58498698 -91018339 + B4A SINE B4 2 147 -145 5 1031 316 100 24 36 chr6 58498879 58498962 -91018075 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1031 288 293 37 0 chr6 58499249 58499331 -91017706 + B4A SINE B4 137 221 -71 5 1031 213 91 36 72 chr6 58499776 58499859 -91017178 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 5 1031 233 137 68 14 chr6 58499875 58499949 -91017088 + (TA)n Simple_repeat Simple_repeat 1 78 0 5 1031 341 304 55 23 chr6 58500000 58500128 -91016909 - B1F SINE Alu -17 132 1 1 1031 828 248 125 110 chr6 58500153 58500452 -91016585 - MTEb LTR MaLR 0 379 76 2 1031 3303 182 35 17 chr6 58500452 58501083 -91015954 - RLTR26 LTR ERVK 0 642 1 3 1031 322 206 103 0 chr6 58501083 58501146 -91015891 - MTEb LTR MaLR -305 74 5 2 1031 225 337 12 0 chr6 58501727 58501810 -91015227 + B1_Mus1 SINE Alu 13 96 -52 4 1031 22 56 0 0 chr6 58501848 58501884 -91015153 + AT_rich Low_complexity Low_complexity 1 36 0 5 1031 2972 240 103 67 chr6 58501886 58502625 -91014412 + Lx9 LINE L1 6536 7347 -297 6 1031 294 135 38 19 chr6 58502625 58502678 -91014359 - RLTR26 LTR ERVK -316 326 273 7 1031 2972 240 103 67 chr6 58502678 58502756 -91014281 + Lx9 LINE L1 7348 7435 -209 6 1031 396 0 0 0 chr6 58502756 58502800 -91014237 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1031 2972 240 103 67 chr6 58502800 58502991 -91014046 + Lx9 LINE L1 7436 7635 -9 6 1031 379 274 86 0 chr6 58503020 58503125 -91013912 + B1F SINE Alu 1 116 -1 9 1031 21 36 0 0 chr6 58503149 58503177 -91013860 + AT_rich Low_complexity Low_complexity 1 28 0 1 1031 2644 134 15 22 chr6 58503231 58503688 -91013349 - RMER1B Other Other -3 1063 610 1 1031 282 116 0 0 chr6 58504435 58504478 -91012559 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 1031 351 65 0 0 chr6 58505024 58505070 -91011967 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1031 575 62 12 0 chr6 58505131 58505211 -91011826 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 1031 1867 212 35 0 chr6 58505290 58505686 -91011351 - Lx6 LINE L1 -977 6483 6074 1 1031 4687 165 32 16 chr6 58505692 58506734 -91010303 - Lx6 LINE L1 -1511 5949 4893 1 1031 1207 52 0 0 chr6 58507562 58507716 -91009321 + L1_Mus1 LINE L1 6017 6170 -397 1 1031 755 142 28 0 chr6 58507714 58507850 -91009187 - Lx5 LINE L1 -1230 5820 5681 1 1031 3193 70 0 17 chr6 58507850 58508271 -91008766 + L1_Mus1 LINE L1 6154 6567 0 1 1031 3466 152 33 36 chr6 58508344 58508984 -91008053 - Lx4B LINE L1 -6 7052 6415 1 1031 871 119 42 30 chr6 58508984 58509149 -91007888 + Lx4B LINE L1 5789 5955 -1103 1 1031 11127 144 101 22 chr6 58509176 58511540 -91005497 - L1_Mur2 LINE L1 -280 5597 3046 2 1031 234 0 0 0 chr6 58511540 58511566 -91005471 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1031 36290 30 0 0 chr6 58511583 58517809 -90999228 - L1Md_T LINE L1 0 6585 262 2 1031 1303 179 49 19 chr6 58517806 58518114 -90998923 - L1_Mur2 LINE L1 -2817 3060 2744 2 1031 12859 85 26 9 chr6 58518116 58520886 -90996151 + L1VL4 LINE L1 36 2841 -718 2 1031 1021 191 178 4 chr6 58520886 58521128 -90995909 - ORR1C1 LTR MaLR -94 284 1 2 1031 1721 231 64 0 chr6 58521599 58521976 -90995061 + MT2A LTR ERVL 3 403 -130 2 1031 488 68 0 14 chr6 58521998 58522072 -90994965 + (TTATA)n Simple_repeat Simple_repeat 5 77 0 2 1031 845 113 0 29 chr6 58522185 58522322 -90994715 - B1_Mus1 SINE Alu -1 147 15 2 1031 808 258 129 69 chr6 58522688 58523005 -90994032 + ORR1D2 LTR MaLR 3 338 -32 2 1031 241 268 18 0 chr6 58523016 58523072 -90993965 - ORR1D1 LTR MaLR -317 57 1 2 1031 2075 257 39 66 chr6 58523242 58523744 -90993293 + ORR1D2-int LTR MaLR 11 517 -853 2 1031 588 195 333 0 chr6 58523744 58523903 -90993134 + B3 SINE B2 1 212 -4 3 1031 2075 257 39 66 chr6 58523903 58524071 -90992966 + ORR1D2-int LTR MaLR 518 663 -707 2 1031 1159 240 138 15 chr6 58524075 58524310 -90992727 + ORR1D2 LTR MaLR 1 273 -97 2 1031 1810 176 41 14 chr6 58524310 58524672 -90992365 - ORR1D1 LTR MaLR -2 372 1 3 1031 1159 240 138 15 chr6 58524672 58524762 -90992275 + ORR1D2 LTR MaLR 274 366 -4 2 1031 1811 129 66 135 chr6 58525172 58525565 -90991472 - ORR1B1 LTR MaLR 0 394 29 3 1031 739 242 6 0 chr6 58525567 58525732 -90991305 + Lx6 LINE L1 6477 6642 -818 3 1031 232 188 0 0 chr6 58525732 58525780 -90991257 + Lx6 LINE L1 6954 7001 -459 3 1031 941 109 0 28 chr6 58525785 58525927 -90991110 + B2_Mm2 SINE B2 5 142 -53 3 1031 1752 205 36 54 chr6 58525930 58526285 -90990752 + Lx7 LINE L1 7205 7539 -157 3 1031 360 111 0 0 chr6 58526285 58526339 -90990698 + (CAATA)n Simple_repeat Simple_repeat 2 55 0 3 1031 1752 205 36 54 chr6 58526339 58526484 -90990553 + Lx7 LINE L1 7540 7695 -1 3 1031 1076 240 126 12 chr6 58526499 58526832 -90990205 + MTD LTR MaLR 1 371 -48 3 1031 453 62 0 0 chr6 58526860 58526925 -90990112 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 3 1031 768 193 14 7 chr6 58527430 58527576 -90989461 + B1_Mur3 SINE Alu 1 147 -2 3 1031 363 267 8 94 chr6 58527589 58527717 -90989320 + RMER5 LTR ERV1 14 130 -404 4 1031 345 161 0 16 chr6 58527722 58527785 -90989252 - RMER1A Other Other -917 113 52 4 1031 2200 198 99 2 chr6 58527940 58528416 -90988621 - RMER5 LTR ERV1 0 534 13 4 1031 1213 61 0 11 chr6 58528904 58529086 -90987951 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1031 1204 102 62 0 chr6 58530805 58530982 -90986055 + B2_Mm2 SINE B2 3 190 -5 4 1031 2062 244 46 6 chr6 58530984 58531484 -90985553 - RMER5 LTR ERV1 -14 520 1 4 1031 180 0 0 0 chr6 58531550 58531570 -90985467 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1031 1060 222 108 91 chr6 58532860 58532946 -90984091 + MT2A LTR ERVL 1 84 -449 4 1031 435 63 0 0 chr6 58532946 58533009 -90984028 + (TATTG)n Simple_repeat Simple_repeat 1 63 0 4 1031 1060 222 108 91 chr6 58533009 58533125 -90983912 + MT2A LTR ERVL 85 190 -343 4 1031 627 14 0 0 chr6 58533125 58533197 -90983840 + (TC)n Simple_repeat Simple_repeat 2 73 0 4 1031 471 35 0 0 chr6 58533197 58533253 -90983784 + (TATG)n Simple_repeat Simple_repeat 2 58 0 5 1031 1060 236 74 91 chr6 58533253 58533434 -90983603 + MT2A LTR ERVL 191 506 -95 4 1031 234 0 0 0 chr6 58533434 58533460 -90983577 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1031 423 0 0 0 chr6 58533460 58533506 -90983531 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1031 413 256 45 110 chr6 58533506 58533537 -90983500 + MT2A LTR ERVL 432 460 -73 4 1031 324 0 0 0 chr6 58533576 58533612 -90983425 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1031 1348 209 19 11 chr6 58533813 58534079 -90982958 + RMER5 LTR ERV1 23 290 -244 5 1031 2236 113 3 9 chr6 58534132 58534461 -90982576 - ORR1A4 LTR MaLR -2 327 1 5 1031 403 307 65 32 chr6 58534466 58534712 -90982325 - RMER17C LTR ERVK -34 376 123 5 1031 546 104 0 0 chr6 58534845 58534922 -90982115 + RMER5 LTR ERV1 458 534 0 5 1031 948 193 125 15 chr6 58535609 58535747 -90981290 + URR1A DNA MER1_type 5 167 -59 5 1031 3050 78 2 2 chr6 58535747 58536143 -90980894 - MTA_Mm LTR MaLR 0 396 1 5 1031 948 193 125 15 chr6 58536143 58536204 -90980833 + URR1A DNA MER1_type 168 226 0 5 1031 838 210 23 51 chr6 58536269 58536485 -90980552 + Lx5 LINE L1 6841 7050 0 6 1031 698 160 0 8 chr6 58536646 58536778 -90980259 + CT-rich Low_complexity Low_complexity 2 132 0 6 1031 316 288 0 0 chr6 58537778 58537858 -90979179 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 1031 540 0 0 0 chr6 58537898 58537958 -90979079 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1031 246 32 0 0 chr6 58538162 58538193 -90978844 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 6 1031 990 203 199 58 chr6 58538534 58539063 -90977974 + RMER1B Other Other 4 509 -557 6 1031 4325 88 22 15 chr6 58539060 58539790 -90977247 + MusHAL1 LINE L1 222 956 -1756 6 1031 6696 125 10 23 chr6 58539798 58541197 -90975840 + Lx2 LINE L1 5263 6648 -349 6 1031 1084 140 77 0 chr6 58541192 58541399 -90975638 + Lx2 LINE L1 6775 6997 0 6 1031 396 0 0 0 chr6 58541520 58541564 -90975473 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1031 1340 136 218 25 chr6 58542571 58543003 -90974034 + RMER5 LTR ERV1 13 527 -7 6 1031 1134 120 0 0 chr6 58543372 58543547 -90973490 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 7 1031 582 86 0 0 chr6 58543547 58543628 -90973409 + (TCC)n Simple_repeat Simple_repeat 3 83 0 7 1031 976 97 0 0 chr6 58543628 58543762 -90973275 - B1_Mus1 SINE Alu 0 148 15 7 1031 397 157 22 22 chr6 58543771 58543862 -90973175 + CT-rich Low_complexity Low_complexity 2 92 0 7 1031 460 261 65 100 chr6 58543889 58544059 -90972978 - RSINE1 SINE B4 0 165 2 7 1031 36 0 0 0 chr6 58544064 58544100 -90972937 + AT_rich Low_complexity Low_complexity 1 36 0 7 1031 375 23 0 0 chr6 58544101 58544145 -90972892 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1031 245 29 0 29 chr6 58545883 58545918 -90971119 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 7 1031 378 0 0 0 chr6 58545927 58545969 -90971068 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1031 231 114 0 0 chr6 58546546 58546581 -90970456 + (CGGGGG)n Simple_repeat Simple_repeat 6 40 0 7 1031 332 22 22 0 chr6 58547242 58547287 -90969750 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 8 1031 226 316 0 0 chr6 58547319 58547376 -90969661 - MER5A1 DNA MER1_type -2 164 108 8 1031 319 289 13 0 chr6 58547440 58547516 -90969521 + ID4 SINE ID 2 78 -5 8 1031 507 241 71 0 chr6 58547578 58547690 -90969347 - PB1D9 SINE Alu 0 120 1 8 1031 364 348 22 15 chr6 58548109 58548246 -90968791 + MER58B DNA MER1_type 198 335 -6 8 1031 208 369 89 8 chr6 58548291 58548414 -90968623 - L2a LINE L2 -31 3395 3263 8 1031 205 368 13 0 chr6 58550183 58550259 -90966778 + MER5A DNA MER1_type 63 139 -50 8 1031 447 100 0 0 chr6 58550610 58550680 -90966357 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1031 450 53 0 0 chr6 58551257 58551314 -90965723 + (TATG)n Simple_repeat Simple_repeat 4 60 0 8 1031 439 375 14 14 chr6 58551364 58551640 -90965397 - B4A SINE B4 -16 276 1 8 1031 604 289 7 26 chr6 58551675 58551828 -90965209 - RSINE1 SINE B4 -13 152 3 9 1031 301 302 0 44 chr6 58552147 58552237 -90964800 - B1F SINE Alu -63 86 1 9 1031 236 308 46 0 chr6 58552183 58552248 -90964789 - B4A SINE B4 -153 139 72 9 1031 450 301 161 102 chr6 58552435 58552894 -90964143 - L2 LINE L2 -1461 1958 1473 9 1031 324 0 0 0 chr6 58552931 58552967 -90964070 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 9 1031 567 29 0 0 chr6 58553059 58553128 -90963909 + (GA)n Simple_repeat Simple_repeat 2 70 0 9 1031 247 325 129 45 chr6 58553189 58553521 -90963516 - L2 LINE L2 -2080 1339 980 9 1031 486 0 0 0 chr6 58553996 58554050 -90962987 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1031 426 347 0 7 chr6 58554629 58554780 -90962257 - RSINE1 SINE B4 -5 160 11 9 1031 571 45 71 18 chr6 58554857 58554970 -90962067 + (TCTCTG)n Simple_repeat Simple_repeat 2 120 0 9 1031 935 214 63 5 chr6 58554973 58555180 -90961857 + MTEb LTR MaLR 161 379 0 9 1031 182 130 88 53 chr6 58555271 58555328 -90961709 + L3 LINE CR1 2565 2623 -1866 1 1031 197 65 32 0 chr6 58555567 58555598 -90961439 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 1 1031 3552 77 7 0 chr6 58555721 58556538 -90960499 - L1VL2 LINE L1 -2158 1457 635 1 1031 302 0 26 0 chr6 58557173 58557211 -90959826 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1031 1203 29 0 0 chr6 58557211 58557348 -90959689 - B1_Mm SINE Alu -9 138 2 1 1031 328 324 9 0 chr6 58557681 58557789 -90959248 + Lx9 LINE L1 7078 7186 -458 1 1031 1050 204 66 0 chr6 58557800 58558011 -90959026 + URR1B DNA MER1_type 1 225 0 1 1031 268 309 91 20 chr6 58558164 58558263 -90958774 + PB1D10 SINE Alu 7 112 -5 1 1031 30 45 0 0 chr6 58558266 58558310 -90958727 + AT_rich Low_complexity Low_complexity 1 44 0 1 1031 2041 256 58 19 chr6 58558359 58558874 -90958163 - RMER15 LTR ERVL -18 557 23 1 1031 707 233 30 0 chr6 58560963 58561096 -90955941 - RSINE1 SINE B4 -25 140 4 1 1031 565 269 150 0 chr6 58561099 58561292 -90955745 - ID_B1 SINE B4 0 224 3 1 1031 399 339 84 62 chr6 58561832 58562200 -90954837 - RMER17C LTR ERVK -34 376 1 1 1031 26 23 0 23 chr6 58562400 58562424 -90954613 + AT_rich Low_complexity Low_complexity 1 24 0 1 1031 1547 43 0 0 chr6 58562424 58562608 -90954429 - B2_Mm1a SINE B2 -8 185 2 1 1031 26 23 0 23 chr6 58562608 58562627 -90954410 + AT_rich Low_complexity Low_complexity 1 19 0 1 1031 631 261 24 53 chr6 58562627 58562797 -90954240 - B3A SINE B2 -7 191 27 1 1031 389 294 7 70 chr6 58562888 58563006 -90954031 - B1_Mus2 SINE Alu -5 122 1 1 1031 311 287 84 92 chr6 58562903 58563022 -90954015 - B4 SINE B4 -106 186 69 1 1031 937 284 79 22 chr6 58563496 58563813 -90953224 + MER2 DNA MER2_type 1 335 -10 1 1031 1205 150 91 58 chr6 58563993 58564234 -90952803 + MT2A LTR ERVL 1 249 -284 1 1031 287 49 24 0 chr6 58564239 58564280 -90952757 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1 1031 351 167 0 0 chr6 58564386 58564452 -90952585 + T-rich Low_complexity Low_complexity 1 66 0 1 1031 1160 205 67 34 chr6 58564762 58565030 -90952007 + MT2A LTR ERVL 256 532 -1 1 1031 180 0 0 0 chr6 58565486 58565506 -90951531 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1031 33591 72 6 4 chr6 58565506 58571415 -90945622 - L1Md_F2 LINE L1 -16 6566 651 1 1031 22 56 0 0 chr6 58571649 58571685 -90945352 + AT_rich Low_complexity Low_complexity 1 36 0 1 1031 330 314 98 98 chr6 58571972 58572216 -90944821 - L1MB7 LINE L1 -223 5961 5718 1 1031 402 291 76 6 chr6 58572285 58572541 -90944496 - L1M5 LINE L1 -892 5552 5258 1 1031 1092 279 52 18 chr6 58572654 58572982 -90944055 - MTD LTR MaLR -80 339 1 1 1031 940 247 211 7 chr6 58574407 58574705 -90942332 - ORR1E LTR MaLR 0 359 1 1 1031 307 286 138 63 chr6 58574886 58575343 -90941694 + L1_Mur3 LINE L1 1335 1806 -4041 1 1031 439 244 0 7 chr6 58575389 58575525 -90941512 + L1_Mur3 LINE L1 3299 3433 -2447 1 1031 913 231 28 44 chr6 58575878 58575963 -90941074 + L1_Mur3 LINE L1 4050 4139 -1741 1 1031 1724 149 160 17 chr6 58575963 58576319 -90940718 - MTB_Mm LTR MaLR 0 407 1 1 1031 913 231 28 44 chr6 58576319 58576336 -90940701 + L1_Mur3 LINE L1 4140 4149 -1731 1 1031 1147 254 66 25 chr6 58576336 58576700 -90940337 + MTE2a LTR MaLR 1 379 0 1 1031 913 231 28 44 chr6 58576700 58576917 -90940120 + L1_Mur3 LINE L1 4150 4365 -1515 1 1031 1809 203 43 30 chr6 58576927 58577499 -90939538 - RMER6D LTR ERVK 0 720 1 1 1031 718 263 67 34 chr6 58577505 58577832 -90939205 + L1_Mur3 LINE L1 4396 4733 -1147 1 1031 619 293 44 30 chr6 58577854 58578125 -90938912 + L1M3 LINE L1 3549 3823 -2317 1 1031 257 333 64 0 chr6 58578423 58578501 -90938536 - ID4 SINE ID 0 83 1 1 1031 720 288 104 40 chr6 58578629 58578976 -90938061 - MLT1B LTR MaLR -9 381 13 1 1031 1289 225 111 9 chr6 58579638 58579970 -90937067 - ORR1D2 LTR MaLR -4 366 1 1 1031 280 374 9 0 chr6 58580394 58580509 -90936528 - Lx8 LINE L1 -146 7327 7212 1 1031 368 351 118 54 chr6 58580691 58580971 -90936066 + MLT1E3 LTR MaLR 327 624 0 1 1031 1674 234 67 19 chr6 58581173 58581548 -90935489 - MTD LTR MaLR -12 407 15 1 1031 273 230 65 39 chr6 58582286 58582363 -90934674 + MLT1D LTR MaLR 1 79 -426 1 1031 342 298 32 38 chr6 58582374 58582531 -90934506 + MLT1D LTR MaLR 167 322 -183 1 1031 280 280 63 117 chr6 58582616 58582822 -90934215 - RLTR41 LTR ERV1 -62 384 190 1 1031 277 239 144 22 chr6 58583277 58583367 -90933670 + MLT1D LTR MaLR 405 505 0 1 1031 800 311 186 49 chr6 58583436 58583946 -90933091 - MER21B LTR ERV1 -11 852 273 1 1031 296 188 99 28 chr6 58584101 58584172 -90932865 + ID4_ SINE ID 5 80 -3 1 1031 189 94 0 0 chr6 58584173 58584205 -90932832 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1031 192 40 0 0 chr6 58584392 58584417 -90932620 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 1 1031 23 0 0 0 chr6 58584504 58584527 -90932510 + AT_rich Low_complexity Low_complexity 1 23 0 1 1031 352 310 115 0 chr6 58584552 58584665 -90932372 - RSINE1 SINE B4 -32 133 8 1 1031 214 147 0 0 chr6 58584673 58584707 -90932330 + (CCTG)n Simple_repeat Simple_repeat 2 35 0 1 1031 306 50 0 0 chr6 58584715 58584755 -90932282 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1 1031 920 254 24 19 chr6 58585848 58586061 -90930976 - B3 SINE B2 -1 215 2 1 1031 249 33 0 0 chr6 58586186 58586216 -90930821 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1031 369 233 178 15 chr6 58587047 58587182 -90929855 + B3A SINE B2 1 157 -41 1 128 1874 238 100 130 chr6 58588371 58589279 -90927758 + MTC-int LTR MaLR 217 1097 -1 1 1032 1637 184 16 22 chr6 58589296 58589618 -90927419 + MTC LTR MaLR 15 334 -87 1 1032 624 104 0 40 chr6 58589837 58589937 -90927100 + MTC LTR MaLR 318 413 -8 1 1032 222 118 0 0 chr6 58591125 58591159 -90925878 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1032 276 325 50 42 chr6 58591162 58591281 -90925756 - PB1 SINE Alu -7 120 1 1 1032 202 327 0 0 chr6 58592159 58592214 -90924823 + CT-rich Low_complexity Low_complexity 3 57 0 1 1032 485 235 234 47 chr6 58592215 58592429 -90924608 - B4 SINE B4 -37 255 2 1 1032 22 0 0 0 chr6 58592980 58593002 -90924035 + AT_rich Low_complexity Low_complexity 1 22 0 1 1032 247 303 52 13 chr6 58593455 58593532 -90923505 + MER21B LTR ERV1 1 80 -783 1 1032 531 185 0 62 chr6 58593550 58593694 -90923343 - L1Md_F3 LINE L1 0 6584 6450 1 1032 238 26 51 0 chr6 58593760 58593799 -90923238 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 1032 183 139 0 0 chr6 58594158 58594194 -90922843 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1032 391 183 48 12 chr6 58594194 58594277 -90922760 - B1F2 SINE Alu 0 149 64 1 1032 386 250 135 8 chr6 58594260 58594393 -90922644 + MER21B LTR ERV1 607 756 -107 1 1032 252 275 78 51 chr6 58595441 58595646 -90921391 - L1MD3 LINE L1 -316 7679 7363 1 1032 252 289 35 40 chr6 58595878 58596088 -90920949 - L1MD3 LINE L1 -820 7062 6845 1 1032 658 267 94 77 chr6 58596854 58597378 -90919659 + RLTR18 LTR ERVK 1 591 -25 1 1032 356 269 45 71 chr6 58598183 58598295 -90918742 - PB1D7 SINE Alu 0 120 12 1 1032 318 281 0 35 chr6 58598303 58598388 -90918649 - ID_B1 SINE B4 0 224 143 1 1032 24 53 0 0 chr6 58599106 58599144 -90917893 + AT_rich Low_complexity Low_complexity 1 38 0 1 1032 466 271 113 0 chr6 58599157 58599290 -90917747 - RSINE1 SINE B4 -17 148 1 1 1032 1898 206 57 33 chr6 58599621 58600164 -90916873 - Lx7 LINE L1 -2 7694 7139 1 1032 352 300 33 0 chr6 58600421 58600511 -90916526 - MER34A LTR ERV1 0 571 479 1 1032 392 245 28 38 chr6 58600588 58600694 -90916343 - PB1D10 SINE Alu -9 108 4 1 1032 592 232 40 7 chr6 58600774 58600926 -90916111 + RSINE1 SINE B4 3 159 -6 1 1032 211 282 28 14 chr6 58601352 58601424 -90915613 - L2 LINE L2 -2524 895 823 1 1032 1593 204 108 57 chr6 58601898 58602287 -90914750 - MTD LTR MaLR -6 413 5 1 1032 3034 83 2 0 chr6 58602357 58602756 -90914281 + MTB LTR MaLR 1 400 0 1 1032 468 0 0 0 chr6 58603927 58603979 -90913058 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1032 522 0 0 0 chr6 58604867 58604925 -90912112 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1032 787 249 40 0 chr6 58606436 58606609 -90910428 + ID_B1 SINE B4 1 180 -44 1 1032 438 221 42 10 chr6 58606528 58606624 -90910413 + PB1D10 SINE Alu 17 115 -2 1 1032 199 0 0 122 chr6 58606625 58606666 -90910371 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1 1032 225 65 0 0 chr6 58607045 58607076 -90909961 + (TAG)n Simple_repeat Simple_repeat 2 32 0 1 1032 276 30 0 0 chr6 58607238 58607271 -90909766 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1 1032 468 316 14 22 chr6 58607277 58607416 -90909621 - ID_B1 SINE B4 -1 223 86 1 1032 1610 57 5 0 chr6 58607464 58607674 -90909363 + L1Md_A LINE L1 6372 6582 0 1 1032 21 0 0 0 chr6 58607732 58607753 -90909284 + AT_rich Low_complexity Low_complexity 1 21 0 1 1032 13500 81 31 10 chr6 58607822 58610651 -90906386 - L1VL2 LINE L1 -627 2988 90 1 1032 24 0 0 0 chr6 58610757 58610781 -90906256 + AT_rich Low_complexity Low_complexity 1 24 0 1 1032 393 274 48 10 chr6 58610790 58610893 -90906144 + B1F1 SINE Alu 21 127 -22 1 1032 248 336 41 57 chr6 58610893 58610913 -90906124 + ID_B1 SINE B4 102 222 -2 1 1032 269 312 60 35 chr6 58611450 58611566 -90905471 - MER58B DNA MER1_type 0 341 223 1 1032 360 0 0 0 chr6 58612733 58612773 -90904264 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1032 434 229 131 0 chr6 58612811 58612933 -90904104 - RSINE1 SINE B4 -24 141 4 1 1032 232 312 16 0 chr6 58613258 58613322 -90903715 - ID4_ SINE ID -11 72 8 1 1032 209 54 81 0 chr6 58614060 58614097 -90902940 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1032 656 225 28 21 chr6 58614177 58614322 -90902715 - B1_Mur1 SINE Alu -3 146 1 1 1032 370 220 267 17 chr6 58615917 58616037 -90901000 + B4 SINE B4 17 166 -126 1 1032 1156 54 20 0 chr6 58616094 58616243 -90900794 + B2_Mm2 SINE B2 5 156 -39 1 1032 213 39 0 0 chr6 58616267 58616293 -90900744 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2 1032 255 302 0 87 chr6 58616449 58616634 -90900403 + (GGGTG)n Simple_repeat Simple_repeat 1 169 0 2 1032 279 149 18 40 chr6 58617391 58617456 -90899581 - MLT1A LTR MaLR -12 378 302 2 1032 253 275 0 0 chr6 58617934 58618014 -90899023 - L1_Rod LINE L1 0 5847 5768 2 1032 384 22 0 0 chr6 58618124 58618169 -90898868 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1032 219 133 44 0 chr6 58618454 58618499 -90898538 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 2 1032 260 70 0 23 chr6 58618633 58618677 -90898360 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1032 210 71 0 0 chr6 58618788 58618816 -90898221 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1032 3940 179 40 62 chr6 58619627 58620544 -90896493 - RMER13B LTR ERVK -11 897 1 2 1032 725 239 102 11 chr6 58620904 58621090 -90895947 - B3 SINE B2 -12 204 2 2 1032 740 279 28 0 chr6 58621256 58621435 -90895602 + B3 SINE B2 23 206 -10 2 1032 269 220 1 11 chr6 58622173 58622239 -90894798 + B1F1 SINE Alu 61 148 -1 2 1032 324 0 0 0 chr6 58622436 58622472 -90894565 + (TATG)n Simple_repeat Simple_repeat 4 39 0 2 1032 1210 220 43 39 chr6 58622472 58622914 -90894123 - MT2A LTR ERVL -82 451 1 2 1032 512 288 6 53 chr6 58622914 58623077 -90893960 + ID_B1 SINE B4 70 224 0 2 1032 824 173 7 7 chr6 58622938 58623078 -90893959 + B1_Mur1 SINE Alu 10 149 0 2 1032 655 261 36 0 chr6 58623300 58623438 -90893599 - B1_Mur1 SINE Alu 0 149 7 2 1032 264 333 22 124 chr6 58623576 58623802 -90893235 - RMER4B LTR ERVK -372 213 11 2 1032 270 0 0 0 chr6 58624432 58624462 -90892575 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1032 195 42 0 0 chr6 58625009 58625033 -90892004 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1032 1215 48 0 0 chr6 58625033 58625179 -90891858 - B1_Mm SINE Alu 0 147 2 2 1032 22 0 0 0 chr6 58625303 58625325 -90891712 + AT_rich Low_complexity Low_complexity 1 22 0 2 1032 1171 68 0 0 chr6 58625330 58625477 -90891560 + B1_Mus2 SINE Alu 1 147 0 2 1032 315 0 0 0 chr6 58625477 58625512 -90891525 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1032 186 43 0 0 chr6 58625599 58625622 -90891415 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1032 946 166 14 0 chr6 58625622 58625767 -90891270 - B1_Mur3 SINE Alu -2 147 1 2 1032 894 249 246 18 chr6 58625980 58626320 -90890717 - MTD LTR MaLR -2 417 1 2 1032 180 0 0 0 chr6 58626476 58626496 -90890541 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 2 1032 369 285 37 90 chr6 58626838 58627027 -90890010 + B3A SINE B2 4 182 -16 2 1032 702 67 2 26 chr6 58628375 58628498 -90888539 - ORR1A3-int LTR MaLR -1677 115 3 2 1032 2353 90 6 3 chr6 58628498 58628821 -90888216 - ORR1A3 LTR MaLR -2 324 1 2 1032 807 277 112 73 chr6 58628912 58629546 -90887491 - L1MB3 LINE L1 -38 6145 5487 2 1032 409 269 137 14 chr6 58629572 58629783 -90887254 - L1M4 LINE L1 -789 5357 5121 2 1032 6306 56 1 0 chr6 58629787 58630568 -90886469 - L1_Mus1 LINE L1 0 6567 5786 2 1032 1306 82 33 0 chr6 58630578 58630760 -90886277 - L1_Mus1 LINE L1 0 6567 6380 2 1032 225 0 0 0 chr6 58630767 58630792 -90886245 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 2 1032 2752 78 11 0 chr6 58630848 58631218 -90885819 - MTB LTR MaLR -26 374 1 2 1032 839 245 10 30 chr6 58631325 58631527 -90885510 - B3 SINE B2 -15 201 4 2 1032 443 306 8 53 chr6 58631566 58631697 -90885340 - PB1 SINE Alu -2 125 1 2 1032 181 250 159 14 chr6 58631830 58631899 -90885138 - MIRc SINE MIR -51 217 139 2 1032 320 203 17 0 chr6 58632187 58632246 -90884791 + B2_Mm2 SINE B2 12 71 -124 2 1032 498 285 50 114 chr6 58632282 58632717 -90884320 - MTE2a LTR MaLR -2 417 2 2 1032 235 239 44 15 chr6 58632777 58632845 -90884192 - MLT1A LTR MaLR -303 71 2 2 1032 23 0 0 0 chr6 58633110 58633133 -90883904 + AT_rich Low_complexity Low_complexity 1 23 0 2 1032 201 39 0 0 chr6 58633711 58633737 -90883300 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 2 1032 328 242 125 10 chr6 58636082 58636178 -90880859 + PB1D10 SINE Alu 3 109 -8 2 1032 192 40 0 0 chr6 58636506 58636531 -90880506 + (CATA)n Simple_repeat Simple_repeat 2 26 0 2 1032 231 321 14 58 chr6 58636531 58636670 -90880367 - YREP_Mm Unknown Unknown -1490 322 190 2 1032 647 248 0 22 chr6 58636547 58636683 -90880354 + ID_B1 SINE B4 92 224 0 2 1032 1196 86 21 41 chr6 58637081 58637119 -90879918 - B2_Mm2 SINE B2 -3 192 161 2 1032 996 168 11 0 chr6 58637119 58637310 -90879727 - Lx3B LINE L1 -3 6970 6778 2 1032 1196 86 21 41 chr6 58637310 58637465 -90879572 - B2_Mm2 SINE B2 -35 160 3 2 1032 677 280 10 70 chr6 58637749 58637949 -90879088 - B3A SINE B2 0 198 11 2 1032 630 264 0 8 chr6 58638331 58638461 -90878576 + B1F2 SINE Alu 10 138 -11 2 1032 892 264 34 0 chr6 58638596 58638804 -90878233 + B3 SINE B2 2 216 0 2 1032 301 336 29 44 chr6 58638804 58638941 -90878096 + MER2B DNA MER2_type 201 335 -1 2 1032 1238 71 0 6 chr6 58639199 58639370 -90877667 + (TTTC)n Simple_repeat Simple_repeat 2 171 0 2 1032 305 307 51 0 chr6 58639370 58639469 -90877568 - PB1D10 SINE Alu -11 106 4 2 1032 225 250 0 0 chr6 58640314 58640362 -90876675 + G-rich Low_complexity Low_complexity 5 52 0 2 1032 180 208 167 0 chr6 58640690 58640738 -90876299 + MIRm SINE MIR 100 155 -121 2 1032 477 0 0 0 chr6 58641102 58641155 -90875882 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1032 246 224 143 13 chr6 58642652 58642729 -90874308 + B1F SINE Alu 1 87 -62 2 1032 246 125 0 72 chr6 58643702 58643771 -90873266 + T-rich Low_complexity Low_complexity 4 67 0 2 1032 1411 314 5 32 chr6 58643884 58644479 -90872558 - Lx9 LINE L1 -273 7371 6793 2 1032 461 250 9 0 chr6 58644501 58644609 -90872428 - Lx9 LINE L1 -1010 6634 6526 2 1032 1087 276 176 18 chr6 58644991 58645123 -90871914 - Lx9 LINE L1 -1787 5909 5715 2 1032 336 48 0 0 chr6 58645123 58645165 -90871872 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 1032 1087 279 146 35 chr6 58645165 58645909 -90871128 - Lx9 LINE L1 -133 5714 4906 2 1032 2956 151 61 9 chr6 58645909 58646465 -90870572 + RMER4B LTR ERVK 1 585 0 2 1032 1087 287 117 67 chr6 58646465 58647210 -90869827 - Lx9 LINE L1 -1181 4962 4186 2 1032 255 342 99 6 chr6 58647726 58647888 -90869149 + LTR16E1 LTR ERVL 353 529 -9 2 1032 2225 123 35 17 chr6 58648419 58648765 -90868272 + RLTR17 LTR ERVK 2 353 -339 2 1032 435 269 67 37 chr6 58648870 58649005 -90868032 + B4A SINE B4 3 141 -151 2 1032 216 0 0 0 chr6 58649111 58649135 -90867902 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 1032 234 0 0 0 chr6 58649135 58649160 -90867877 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1032 654 205 158 18 chr6 58649240 58649404 -90867633 - RMER6D LTR ERVK -164 556 370 2 1032 6741 69 25 13 chr6 58649404 58650568 -90866469 + L1VL4 LINE L1 714 1891 -1668 2 1032 1299 154 0 0 chr6 58650562 58650796 -90866241 + L1_Mm LINE L1 5190 5423 -460 2 1032 393 117 0 0 chr6 58650791 58650851 -90866186 + L1_Mur1 LINE L1 5503 5562 -324 2 1032 2203 71 32 19 chr6 58650860 58651176 -90865861 - IAPLTR2b LTR ERVK -7 320 1 2 1032 1529 111 0 0 chr6 58651176 58651402 -90865635 + L1_Mm LINE L1 5557 5782 -101 2 1032 12161 52 2 0 chr6 58651443 58653721 -90863316 - L1Md_F2 LINE L1 0 6582 4300 2 1032 5406 136 19 3 chr6 58653721 58654586 -90862451 + Lx LINE L1 5777 6654 0 2 1032 1354 156 65 76 chr6 58654587 58654878 -90862159 - ORR1B1-int LTR MaLR -172 1337 1050 2 1032 280 42 20 59 chr6 58654878 58654929 -90862108 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 2 1032 1211 87 11 17 chr6 58654963 58654984 -90862053 - B2_Mm2 SINE B2 -19 176 157 2 1032 459 52 0 0 chr6 58654984 58655042 -90861995 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2 1032 1211 87 11 17 chr6 58655042 58655196 -90861841 - B2_Mm2 SINE B2 -39 156 2 2 1032 5779 159 159 112 chr6 58655196 58656725 -90860312 - ORR1A4-int LTR MaLR -363 1600 1 2 1032 2016 122 16 10 chr6 58656725 58657032 -90860005 - ORR1A4 LTR MaLR 0 329 21 2 1032 3748 244 137 23 chr6 58657352 58659416 -90857621 + Lx9 LINE L1 3640 5965 -1679 2 1032 3472 86 34 2 chr6 58659644 58660120 -90856917 + Lx3_Mus LINE L1 6513 7003 -6 2 1032 225 239 136 12 chr6 58660125 58660294 -90856743 + L1M4b LINE L1 3141 3330 -4004 2 1032 251 330 22 22 chr6 58660317 58660407 -90856630 + RSINE1 SINE B4 3 92 -73 2 1032 6408 55 4 46 chr6 58662620 58663572 -90853465 + L1Md_A LINE L1 433 1344 -5380 2 1032 14889 20 0 1 chr6 58665999 58667815 -90849222 + L1Md_T LINE L1 3772 5586 -297 2 1032 8585 28 0 0 chr6 58667815 58668811 -90848226 + L1Md_T LINE L1 5587 6582 0 2 1032 1157 247 73 40 chr6 58669237 58669591 -90847446 + MTC-int LTR MaLR 180 545 -713 2 1032 768 284 20 69 chr6 58669596 58669842 -90847195 + MTC-int LTR MaLR 744 977 -281 2 1032 1462 269 10 70 chr6 58670722 58671233 -90845804 + Lx6 LINE L1 6980 7459 -1 2 1032 384 167 0 0 chr6 58671238 58671310 -90845727 + GA-rich Low_complexity Low_complexity 1 72 0 2 1032 564 262 111 25 chr6 58671444 58671679 -90845358 + RLTR42-int LTR ERVK 1101 1355 -4167 2 1032 795 196 0 0 chr6 58672503 58672676 -90844361 + GA-rich Low_complexity Low_complexity 2 174 0 2 1032 380 123 25 0 chr6 58673140 58673221 -90843816 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 2 1032 493 206 16 8 chr6 58673224 58673351 -90843686 + (CATATA)n Simple_repeat Simple_repeat 6 133 0 2 1032 5738 78 13 0 chr6 58673432 58674229 -90842808 + L1_Mus3 LINE L1 5766 6576 -62 2 1032 351 105 0 0 chr6 58674236 58674293 -90842744 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1032 10745 56 0 13 chr6 58674436 58676622 -90840415 - L1Md_F2 LINE L1 -1 6581 4431 2 1032 2071 215 106 33 chr6 58676621 58677377 -90839660 + L1_Rod LINE L1 4068 4878 -969 2 1032 453 131 11 67 chr6 58677378 58677468 -90839569 + L1_Rod LINE L1 5631 5715 -132 2 1032 2227 155 81 14 chr6 58677503 58677934 -90839103 - RMER4A LTR ERVK 0 466 7 2 1032 793 119 8 0 chr6 58677950 58678076 -90838961 - MurERV4-int LTR ERVK 0 5260 5134 2 1032 219 103 0 0 chr6 58678083 58678122 -90838915 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1032 1825 184 21 16 chr6 58678141 58678516 -90838521 - MurERV4-int LTR ERVK -3186 2074 1698 2 1032 533 108 0 0 chr6 58678510 58678584 -90838453 - MurERV4-int LTR ERVK -3771 1489 1416 2 1032 500 62 309 0 chr6 58678647 58678728 -90838309 - MTB_Mm LTR MaLR -299 108 3 3 1032 1762 167 70 11 chr6 58678728 58679085 -90837952 - MurERV4-int LTR ERVK -4756 504 127 2 1032 258 175 35 0 chr6 58679107 58679164 -90837873 - MurERV4-int LTR ERVK -5200 60 2 2 1032 1890 178 16 35 chr6 58679168 58679534 -90837503 - RMER4A LTR ERVK -3 463 105 2 1032 1444 178 128 40 chr6 58679534 58679738 -90837299 + RMER17C LTR ERVK 1 227 -183 3 1032 824 0 10 0 chr6 58679738 58679834 -90837203 + (TC)n Simple_repeat Simple_repeat 1 97 0 3 1032 1444 178 128 40 chr6 58679834 58680004 -90837033 + RMER17C LTR ERVK 228 408 -2 3 1032 327 164 33 122 chr6 58680006 58680096 -90836941 + RMER17C-int LTR ERVK 1 82 -3156 3 1032 314 233 35 0 chr6 58680149 58680235 -90836802 + RMER17C-int LTR ERVK 108 196 -3042 3 1032 9124 116 34 28 chr6 58680239 58681468 -90835569 + RMER17C-int LTR ERVK 1644 2887 -351 3 1032 525 44 0 0 chr6 58681468 58681536 -90835501 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 3 1032 9124 116 34 28 chr6 58681536 58681862 -90835175 + RMER17C-int LTR ERVK 2888 3207 -31 3 1032 1164 54 0 33 chr6 58681866 58682019 -90835018 - B1_Mus1 SINE Alu 0 148 1 3 1032 1102 190 76 26 chr6 58682019 58682317 -90834720 + RMER17C LTR ERVK 89 401 -9 3 1032 614 136 10 10 chr6 58682321 58682425 -90834612 - RMER4A LTR ERVK -357 109 6 2 1032 554 296 49 8 chr6 58682442 58682687 -90834350 + Lx9 LINE L1 7181 7435 -209 3 1032 210 139 42 0 chr6 58682690 58682762 -90834275 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 1032 28 71 0 0 chr6 58682902 58682958 -90834079 + AT_rich Low_complexity Low_complexity 1 56 0 3 1032 803 210 0 0 chr6 58683093 58683236 -90833801 + URR1B DNA MER1_type 3 145 -80 3 1032 456 270 71 39 chr6 58683338 58683646 -90833391 + L1M2 LINE L1 2933 3250 -2893 3 1032 3106 102 31 16 chr6 58684410 58684860 -90832177 - Lx3A LINE L1 -2 6979 6523 3 1032 593 136 0 10 chr6 58684967 58685071 -90831966 + (GAA)n Simple_repeat Simple_repeat 2 104 0 3 1032 324 0 0 0 chr6 58685071 58685107 -90831930 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1032 432 0 0 0 chr6 58685674 58685722 -90831315 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1032 1370 82 16 0 chr6 58686077 58686259 -90830778 + B2_Mm2 SINE B2 4 188 -7 3 1032 552 304 15 24 chr6 58686289 58686495 -90830542 - Lx8 LINE L1 -1059 6414 6211 3 1032 271 317 0 96 chr6 58686640 58686776 -90830261 - RMER4B LTR ERVK -398 187 65 3 1032 336 24 0 0 chr6 58686895 58686936 -90830101 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1032 480 18 0 0 chr6 58686936 58686992 -90830045 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1032 2250 312 33 20 chr6 58687006 58687864 -90829173 + Lx8 LINE L1 6452 7320 -153 3 1032 288 0 85 0 chr6 58688270 58688317 -90828720 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1032 1053 71 57 0 chr6 58688332 58688472 -90828565 - B1_Mus1 SINE Alu 0 148 1 3 1032 1247 232 173 58 chr6 58688680 58689156 -90827881 + MT2B LTR ERVL 1 543 -58 3 1032 243 88 0 0 chr6 58689156 58689190 -90827847 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 3 1032 263 54 0 51 chr6 58689269 58689308 -90827729 + MT2B LTR ERVL 535 571 -13 3 1032 1187 241 40 111 chr6 58689487 58689883 -90827154 - MTE2a LTR MaLR -9 370 3 3 1032 1472 315 100 27 chr6 58690117 58690757 -90826280 - Tigger6a DNA MER2_type -322 761 75 3 1032 407 343 6 6 chr6 58690760 58690929 -90826108 - Tigger6a DNA MER2_type -855 228 60 3 1032 353 211 122 0 chr6 58690929 58691019 -90826018 - RMER5 LTR ERV1 -2 532 432 3 1032 257 280 56 9 chr6 58691459 58691535 -90825502 - RMER5 LTR ERV1 -128 406 329 3 1032 1294 85 5 50 chr6 58691535 58691733 -90825304 + B2_Mm2 SINE B2 1 189 -6 3 1032 257 280 56 9 chr6 58691733 58691764 -90825273 - RMER5 LTR ERV1 -206 328 295 3 1032 6087 158 50 15 chr6 58692376 58693087 -90823950 - Lx4B LINE L1 -240 6818 6082 3 1032 252 0 0 0 chr6 58693087 58693115 -90823922 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1032 23652 144 27 37 chr6 58693115 58695248 -90821789 - Lx4B LINE L1 -977 6081 3930 3 1032 3067 53 5 10 chr6 58695248 58695650 -90821387 - L1Md_F2 LINE L1 0 6582 6183 3 1032 23652 143 25 40 chr6 58695650 58695917 -90821120 - Lx4B LINE L1 -1948 3929 3665 3 1032 3343 30 0 0 chr6 58695917 58696310 -90820727 + L1Md_A LINE L1 6190 6582 0 3 1032 23652 143 25 40 chr6 58696310 58696992 -90820045 - Lx4B LINE L1 -2213 3664 3057 3 1032 1090 76 14 0 chr6 58696992 58697137 -90819900 - B1_Mus2 SINE Alu 0 147 1 3 1032 23652 156 41 37 chr6 58697137 58699292 -90817745 - Lx4B LINE L1 -2821 3056 835 3 1032 532 299 65 0 chr6 58699989 58700143 -90816894 + RSINE1 SINE B4 2 165 0 3 1032 235 111 0 0 chr6 58700156 58700192 -90816845 - L1_Rod LINE L1 -348 5499 5464 3 1032 1747 209 103 26 chr6 58700199 58700734 -90816303 - L1_Rod LINE L1 -620 5227 4652 3 1032 302 200 13 0 chr6 58701159 58701234 -90815803 - L1M3 LINE L1 -1417 4723 4648 3 1032 260 125 0 0 chr6 58701234 58701274 -90815763 - L1_Rod LINE L1 -3658 2189 2150 3 1032 1100 188 38 28 chr6 58701274 58701381 -90815656 - ORR1C1 LTR MaLR 0 378 269 3 1032 2484 84 206 0 chr6 58701381 58701822 -90815215 + RLTR47_MM LTR ERV1 1 532 0 3 1032 1100 188 38 28 chr6 58701822 58701927 -90815110 - ORR1C1 LTR MaLR -110 268 164 3 1032 473 270 113 73 chr6 58701958 58702162 -90814875 - RMER2 LTR ERV1 -26 541 330 3 1032 21 0 0 0 chr6 58702338 58702359 -90814678 + AT_rich Low_complexity Low_complexity 1 21 0 3 1032 1233 118 27 0 chr6 58703063 58703250 -90813787 + B2_Mm2 SINE B2 2 193 -2 3 1032 811 300 47 21 chr6 58703284 58703598 -90813439 - RLTR16 LTR ERVK -338 354 1 3 1032 619 292 49 18 chr6 58703643 58704142 -90812895 - L1_Mur3 LINE L1 -4243 1637 1128 3 1032 782 231 7 0 chr6 58704163 58704310 -90812727 + B1_Mur2 SINE Alu 2 149 0 3 1032 29 28 0 0 chr6 58705099 58705135 -90811902 + AT_rich Low_complexity Low_complexity 1 36 0 3 1032 2231 124 62 85 chr6 58705486 58705935 -90811102 + RMER6B LTR ERVK 1 439 -22 3 1032 2546 133 91 32 chr6 58705937 58706459 -90810578 + ORR1B1-int LTR MaLR 1007 1956 -7 3 1032 446 304 49 35 chr6 58706459 58706602 -90810435 - RSINE1 SINE B4 -19 146 2 3 1032 440 35 0 17 chr6 58706854 58706913 -90810124 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1032 21 0 0 0 chr6 58707148 58707169 -90809868 + AT_rich Low_complexity Low_complexity 1 21 0 3 1032 530 63 0 12 chr6 58707575 58707655 -90809382 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1032 1072 246 114 9 chr6 58707780 58708112 -90808925 - ORR1D2 LTR MaLR -3 367 1 3 1032 633 80 0 0 chr6 58708196 58708284 -90808753 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 3 1032 501 273 19 39 chr6 58708455 58708611 -90808426 - ORR1E LTR MaLR -171 188 36 3 1032 1156 62 0 7 chr6 58708774 58708919 -90808118 + B1_Mus1 SINE Alu 5 148 0 3 1032 348 24 0 0 chr6 58708923 58708964 -90808073 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 1032 261 308 10 62 chr6 58709432 58709444 -90807593 + ID SINE ID 70 76 -148 3 1032 440 217 23 35 chr6 58709444 58709530 -90807507 + B1_Mur4 SINE Alu 1 85 -65 3 1032 213 310 46 114 chr6 58709569 58709594 -90807443 - RSINE1 SINE B4 0 165 141 3 1032 276 77 0 0 chr6 58709594 58709633 -90807404 + (TGG)n Simple_repeat Simple_repeat 3 41 0 3 1032 258 293 0 17 chr6 58709633 58709692 -90807345 - tRNA-Ala-GCA tRNA tRNA -6 69 12 3 1032 226 338 0 86 chr6 58709634 58709715 -90807322 - ID2 SINE ID -9 74 1 3 1032 213 310 46 114 chr6 58709715 58709782 -90807255 - RSINE1 SINE B4 -48 117 4 3 1032 24 32 0 0 chr6 58710010 58710041 -90806996 + AT_rich Low_complexity Low_complexity 1 31 0 3 1032 572 50 12 0 chr6 58710224 58710304 -90806733 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1032 24 0 0 0 chr6 58710730 58710754 -90806283 + AT_rich Low_complexity Low_complexity 1 24 0 3 1032 947 62 132 0 chr6 58710790 58710919 -90806118 + B1_Mm SINE Alu 2 147 0 3 1032 267 152 0 0 chr6 58710921 58710967 -90806070 + A-rich Low_complexity Low_complexity 1 46 0 3 1032 346 222 40 112 chr6 58711189 58711341 -90805696 + L1MB7 LINE L1 5750 5890 -294 3 1032 263 267 67 0 chr6 58711469 58711574 -90805463 + L1MB7 LINE L1 6069 6180 0 3 1032 639 279 6 12 chr6 58711615 58711775 -90805262 + ID_B1 SINE B4 65 223 -1 3 1032 23 0 0 0 chr6 58711776 58711799 -90805238 + AT_rich Low_complexity Low_complexity 1 23 0 3 1032 1163 141 10 25 chr6 58711906 58712103 -90804934 + B2_Mm2 SINE B2 2 195 0 3 1032 2952 102 40 9 chr6 58712345 58712798 -90804239 - RMER2 LTR ERV1 -100 467 1 3 1032 192 59 94 38 chr6 58713133 58713186 -90803851 + A-rich Low_complexity Low_complexity 3 58 0 3 1032 29606 63 33 38 chr6 58713329 58717537 -90799500 + L1Md_A LINE L1 610 4909 -974 3 1032 234 271 36 79 chr6 58717537 58717677 -90799360 - MER72B LTR ERV1 -355 413 280 3 1032 29606 63 33 38 chr6 58717677 58718337 -90798700 + L1Md_A LINE L1 4910 5585 -298 3 1032 8091 37 6 1 chr6 58718338 58719317 -90797720 + L1Md_F3 LINE L1 5587 6570 -14 3 1032 1015 120 130 5 chr6 58719785 58719969 -90797068 + RMER6C LTR ERVK 484 690 0 3 1 679 208 26 26 chr6 58720218 58720371 -90796666 + ORR1D2 LTR MaLR 218 370 0 3 1033 213 65 0 0 chr6 58720425 58720456 -90796581 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1033 251 248 45 7 chr6 58720739 58720813 -90796224 + B1F SINE Alu 14 86 -34 3 1033 834 183 2 23 chr6 58722990 58723189 -90793848 + B3 SINE B2 1 187 -8 3 1033 1392 86 5 0 chr6 58723534 58723720 -90793317 + B2_Mm1t SINE B2 1 187 -6 3 1033 645 276 174 30 chr6 58723804 58724125 -90792912 + MTEa LTR MaLR 1 370 0 3 1033 509 296 84 19 chr6 58724125 58724280 -90792757 + MTEa-int LTR MaLR 1 165 -1415 3 1033 360 305 93 10 chr6 58724388 58724689 -90792348 + L1_Rod LINE L1 465 790 -6382 3 1033 1151 243 135 36 chr6 58724698 58725582 -90791455 + L1_Rod LINE L1 4024 5010 -837 3 1033 345 24 0 0 chr6 58725630 58725672 -90791365 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1033 266 197 0 0 chr6 58725678 58725739 -90791298 + L1_Mur3 LINE L1 3909 3969 -1911 3 1033 2098 187 34 3 chr6 58725739 58726119 -90790918 - ORR1B1 LTR MaLR 0 394 3 3 1033 1257 86 23 0 chr6 58726207 58726382 -90790655 + B2_Mm1t SINE B2 1 179 -14 3 1033 429 36 0 51 chr6 58726406 58726465 -90790572 + B2_Mm2 SINE B2 46 101 -94 3 1033 24 32 0 0 chr6 58726487 58726518 -90790519 + AT_rich Low_complexity Low_complexity 1 31 0 3 1033 409 256 49 0 chr6 58726578 58726742 -90790295 + L1_Mur3 LINE L1 1595 1766 -4114 3 1033 1348 270 53 30 chr6 58726740 58727306 -90789731 + L1_Mur3 LINE L1 1937 2515 -3365 3 1033 3387 169 15 34 chr6 58727317 58727842 -90789195 - RMER6D LTR ERVK -4 716 200 3 1033 1128 87 121 6 chr6 58727842 58728015 -90789022 - B2_Mm2 SINE B2 -2 193 1 3 1033 3387 180 50 34 chr6 58728015 58728165 -90788872 - RMER6D LTR ERVK -521 199 1 3 1033 1192 236 36 68 chr6 58728165 58728638 -90788399 + L1_Mur3 LINE L1 2517 2974 -2906 3 1033 536 267 46 9 chr6 58728646 58728865 -90788172 + L1_Rod LINE L1 3132 3358 -2489 3 1033 635 144 127 8 chr6 58729388 58729514 -90787523 - URR1B DNA MER1_type -2 223 83 3 1033 5923 179 61 13 chr6 58730169 58731324 -90785713 - MTD-int LTR MaLR -47 1211 2 3 1033 306 116 0 0 chr6 58731323 58731366 -90785671 - MTD LTR MaLR 0 421 379 3 1033 308 311 186 57 chr6 58731453 58731630 -90785407 + MT2A LTR ERVL 261 460 -73 3 1033 2853 224 23 191 chr6 58732066 58733433 -90783604 + RMER1B Other Other 153 1051 -15 4 1033 768 252 6 18 chr6 58733468 58733634 -90783403 - MTD LTR MaLR -109 310 147 3 1033 513 0 0 0 chr6 58733656 58733713 -90783324 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1033 189 107 0 0 chr6 58734070 58734098 -90782939 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1033 259 269 218 0 chr6 58734099 58734177 -90782860 - PB1D10 SINE Alu -4 113 19 4 1033 1223 40 23 6 chr6 58734457 58734631 -90782406 + (TTTCC)n Simple_repeat Simple_repeat 4 180 0 4 1033 455 17 34 0 chr6 58734631 58734690 -90782347 + (TTTC)n Simple_repeat Simple_repeat 1 61 0 4 1033 297 261 15 0 chr6 58734711 58734776 -90782261 - ID4 SINE ID 0 83 18 4 1033 355 101 43 0 chr6 58734937 58735006 -90782031 + (GAAAA)n Simple_repeat Simple_repeat 2 73 0 4 1033 345 247 145 13 chr6 58735007 58735239 -90781798 - L1MC4a LINE L1 -354 7688 7395 4 1033 1578 175 150 158 chr6 58736011 58736479 -90780558 + MT2A LTR ERVL 1 464 -69 4 1033 235 221 26 13 chr6 58736479 58736557 -90780480 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 1033 239 146 21 0 chr6 58736558 58736606 -90780431 + MT2A LTR ERVL 484 532 -1 4 1033 619 251 29 78 chr6 58736621 58736863 -90780174 + BGLII_B LTR ERVK 15 244 -197 4 1033 1023 264 63 17 chr6 58736863 58737090 -90779947 + MYSERV-int LTR ERVK 4282 4518 -2032 4 1033 2108 116 28 0 chr6 58737090 58737408 -90779629 + ORR1A2 LTR MaLR 1 327 0 4 1033 1023 266 80 32 chr6 58737408 58737705 -90779332 + MYSERV-int LTR ERVK 4519 4647 -1903 4 1033 335 211 40 0 chr6 58737705 58737781 -90779256 + RMER4B LTR ERVK 507 585 0 4 1033 662 234 46 122 chr6 58737781 58737862 -90779175 - Lx9 LINE L1 -1114 6530 6463 4 1033 1690 21 0 0 chr6 58737862 58738052 -90778985 - B2_Mm1a SINE B2 -2 191 2 4 1033 662 234 46 122 chr6 58738052 58738208 -90778829 - Lx9 LINE L1 -1182 6462 6311 4 1033 613 252 68 48 chr6 58738284 58738593 -90778444 - Lx9 LINE L1 -1530 6114 5800 4 1033 1286 152 0 0 chr6 58738593 58738797 -90778240 - RMER4B LTR ERVK -323 262 59 4 1033 16525 43 1 0 chr6 58738797 58742396 -90774641 - L1Md_T LINE L1 -2402 3484 1 4 1033 17266 21 0 0 chr6 58742397 58744502 -90772535 + L1Md_T LINE L1 3485 5589 -297 4 1033 8889 7 0 0 chr6 58744502 58745486 -90771551 + L1Md_T LINE L1 5590 6573 -12 4 1033 29 0 0 0 chr6 58745500 58745529 -90771508 + AT_rich Low_complexity Low_complexity 1 29 0 4 1033 359 111 127 0 chr6 58745529 58745592 -90771445 - RMER4B LTR ERVK -514 71 1 4 1033 878 190 95 0 chr6 58745592 58745771 -90771266 + Lx9 LINE L1 6525 6720 -924 4 1033 257 273 29 39 chr6 58745758 58745861 -90771176 - Lx8 LINE L1 -694 6779 6678 4 1033 194 330 35 78 chr6 58746052 58746105 -90770932 - MIRb SINE MIR -47 221 166 4 1033 958 140 116 107 chr6 58746105 58746329 -90770708 - URR1A DNA MER1_type 0 226 1 4 1033 194 340 50 20 chr6 58746329 58746390 -90770647 - MIRc SINE MIR -97 171 109 4 1033 355 291 38 38 chr6 58746969 58747155 -90769882 + Lx7 LINE L1 870 1055 -6673 4 1033 4900 246 88 20 chr6 58747226 58748950 -90768087 + Lx7 LINE L1 4818 6624 -1072 4 1033 917 99 0 14 chr6 58748950 58749094 -90767943 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 4 1033 4900 274 65 17 chr6 58749094 58749705 -90767332 + Lx7 LINE L1 6625 7313 -383 4 1033 26 0 0 0 chr6 58751127 58751153 -90765884 + AT_rich Low_complexity Low_complexity 1 26 0 4 1033 309 51 0 0 chr6 58751305 58751344 -90765693 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 4 1033 7112 75 8 22 chr6 58751783 58753296 -90763741 + L1_Mus2 LINE L1 5066 6566 0 4 1033 230 122 19 58 chr6 58754227 58754279 -90762758 + A-rich Low_complexity Low_complexity 6 55 0 4 1033 4328 199 73 27 chr6 58755389 58757018 -90760019 + Lx9 LINE L1 520 2264 -3583 4 1033 989 86 35 14 chr6 58757018 58757160 -90759877 + B1_Mus1 SINE Alu 2 146 -2 4 1033 4328 176 87 42 chr6 58757160 58757408 -90759629 + Lx9 LINE L1 2265 2488 -3359 4 1033 1124 98 12 6 chr6 58757427 58757591 -90759446 + B2_Mm2 SINE B2 27 191 -4 4 1033 1013 237 93 24 chr6 58757602 58758022 -90759015 + Lx9 LINE L1 2542 2990 -2857 4 1033 2109 245 59 53 chr6 58758069 58759714 -90757323 + Lx9 LINE L1 4408 6016 -1628 4 1033 3522 204 58 28 chr6 58760102 58761011 -90756026 + Lx9 LINE L1 6707 7643 -1 4 1033 479 309 101 21 chr6 58762440 58762705 -90754332 - MLT1C LTR MaLR 0 467 53 4 1033 749 290 63 75 chr6 58762950 58763189 -90753848 + B4A SINE B4 30 265 -27 4 1033 293 244 143 24 chr6 58763333 58763459 -90753578 + MLT1A1 LTR MaLR 268 408 0 4 1033 841 278 112 21 chr6 58763539 58763736 -90753301 - MLT1A0 LTR MaLR -4 361 148 4 1033 207 0 0 0 chr6 58763736 58763759 -90753278 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4 1033 1604 60 0 0 chr6 58763764 58763964 -90753073 - L1_Mus1 LINE L1 -1 6566 6367 4 1033 841 278 112 21 chr6 58763964 58764091 -90752946 - MLT1A0 LTR MaLR -221 144 1 4 1033 1235 51 12 17 chr6 58764237 58764476 -90752561 + (TCCC)n Simple_repeat Simple_repeat 1 237 0 4 1033 466 321 21 0 chr6 58765250 58765390 -90751647 + ID_B1 SINE B4 81 223 -1 4 1033 387 298 75 22 chr6 58765393 58765527 -90751510 + ID_B1 SINE B4 78 218 -6 4 1033 521 311 15 7 chr6 58765577 58765713 -90751324 + ID_B1 SINE B4 87 223 -1 4 1033 1547 250 128 34 chr6 58766017 58766635 -90750402 - Lx8 LINE L1 -2 7471 6796 4 1033 1794 266 63 23 chr6 58766635 58766866 -90750171 - ORR1D2-int LTR MaLR -554 816 581 4 1033 633 49 0 0 chr6 58766866 58766947 -90750090 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1033 1794 266 63 23 chr6 58766947 58767239 -90749798 - ORR1D2-int LTR MaLR -790 580 273 4 1033 2865 59 208 9 chr6 58767239 58767666 -90749371 - RLTR1B LTR ERV1 0 512 1 4 1033 63746 19 0 0 chr6 58767666 58775223 -90741814 - MMERGLN-int LTR ERV1 0 7556 1 4 1033 2865 59 208 9 chr6 58775223 58775650 -90741387 - RLTR1B LTR ERV1 0 512 1 4 1033 902 195 63 5 chr6 58775665 58775856 -90741181 - ORR1D2-int LTR MaLR -1111 259 58 4 1033 410 200 0 0 chr6 58775869 58775949 -90741088 - MTC LTR MaLR 0 419 340 4 1033 599 309 52 65 chr6 58775954 58776355 -90740682 - RMER10A LTR ERVL -29 413 18 4 1033 1692 218 29 11 chr6 58776489 58776837 -90740200 - MTC LTR MaLR -65 356 3 4 1033 1548 239 41 8 chr6 58776841 58777198 -90739839 - ORR1D2 LTR MaLR 0 421 1 4 1033 1938 284 58 70 chr6 58777201 58777955 -90739082 - Lx8 LINE L1 -697 6776 6032 4 1033 480 35 0 0 chr6 58778057 58778115 -90738922 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1033 878 156 0 7 chr6 58778154 58778296 -90738741 - B1_Mus1 SINE Alu -7 141 1 4 1033 2476 258 112 41 chr6 58778772 58779344 -90737693 + RCHARR1 DNA MER1_type 1 605 -369 4 1033 550 89 11 11 chr6 58779344 58779435 -90737602 + (TA)n Simple_repeat Simple_repeat 2 92 0 4 1033 2476 258 112 41 chr6 58779435 58779771 -90737266 + RCHARR1 DNA MER1_type 606 973 -1 4 1033 29 0 0 0 chr6 58780372 58780401 -90736636 + AT_rich Low_complexity Low_complexity 1 29 0 4 1033 224 152 0 21 chr6 58781091 58781138 -90735899 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 4 1033 188 162 12 48 chr6 58781388 58781472 -90735565 + (CCCCG)n Simple_repeat Simple_repeat 1 81 0 4 1033 374 342 14 0 chr6 58783304 58783450 -90733587 - B1F SINE Alu -1 148 1 4 1033 342 233 35 11 chr6 58783874 58783961 -90733076 - ID_B1 SINE B4 -23 201 113 4 1033 368 200 0 39 chr6 58784620 58784698 -90732339 - L1M5 LINE L1 -596 5577 5503 4 1033 1989 130 166 3 chr6 58784805 58785167 -90731870 - MTC LTR MaLR 0 421 1 4 1033 192 125 0 0 chr6 58785325 58785357 -90731680 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1033 441 0 0 0 chr6 58785358 58785407 -90731630 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1033 275 372 0 0 chr6 58785426 58785520 -90731517 + PB1D7 SINE Alu 9 102 -18 4 1033 544 246 25 0 chr6 58785623 58785745 -90731292 + B1F SINE Alu 2 126 -23 4 1033 406 293 56 35 chr6 58785912 58786054 -90730983 + ID_B1 SINE B4 82 222 -2 4 1033 2157 98 72 3 chr6 58786962 58787268 -90729769 - ORR1A2 LTR MaLR 0 327 1 4 1033 264 184 9 19 chr6 58787568 58787673 -90729364 + (TA)n Simple_repeat Simple_repeat 2 105 0 4 1033 398 188 83 33 chr6 58787710 58787831 -90729206 - MER3 DNA MER1_type -13 196 70 4 1033 360 257 40 0 chr6 58789561 58789662 -90727375 - PB1D10 SINE Alu -8 109 5 4 1033 195 42 0 0 chr6 58789894 58789918 -90727119 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1033 228 67 0 0 chr6 58790508 58790538 -90726499 + (CATA)n Simple_repeat Simple_repeat 3 32 0 4 1033 252 312 0 0 chr6 58790783 58790847 -90726190 + MER82 DNA MER2_type 2 65 -588 4 1033 240 289 70 9 chr6 58791185 58791300 -90725737 + MER82 DNA MER2_type 260 381 -272 4 1033 215 143 83 67 chr6 58791329 58791389 -90725648 - B2_Mm2 SINE B2 -134 61 1 4 1033 258 32 0 0 chr6 58794391 58794422 -90722615 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1033 288 0 0 0 chr6 58794464 58794496 -90722541 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1033 530 29 15 0 chr6 58794498 58794566 -90722471 + (GA)n Simple_repeat Simple_repeat 1 69 0 4 1033 536 256 153 0 chr6 58795005 58795181 -90721856 + B3 SINE B2 2 204 -12 4 1033 362 328 16 0 chr6 58795459 58795581 -90721456 + ID_B1 SINE B4 86 209 -15 4 1033 288 0 0 0 chr6 58796156 58796188 -90720849 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1033 198 0 0 0 chr6 58796188 58796209 -90720828 + (CG)n Simple_repeat Simple_repeat 2 23 0 4 1033 444 252 23 8 chr6 58796612 58796740 -90720297 - ID_B1 SINE B4 -3 221 92 4 1033 276 30 0 0 chr6 58798307 58798340 -90718697 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1033 469 319 51 0 chr6 58798358 58798444 -90718593 - B3A SINE B2 -30 168 77 4 1033 318 50 0 0 chr6 58798444 58798484 -90718553 + (TTA)n Simple_repeat Simple_repeat 2 41 0 4 1033 469 319 51 0 chr6 58798484 58798554 -90718483 - B3A SINE B2 -122 76 5 4 1033 297 0 0 0 chr6 58798650 58798683 -90718354 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1033 1142 171 24 5 chr6 58800291 58800503 -90716534 - B3 SINE B2 0 216 1 4 1033 262 212 30 15 chr6 58800788 58800855 -90716182 - RLTR18B LTR ERVK -444 68 1 4 1033 231 113 0 54 chr6 58800855 58800911 -90716126 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 4 1033 2139 267 102 25 chr6 58801284 58801964 -90715073 - Lx8 LINE L1 -244 7229 6498 4 1033 987 276 26 29 chr6 58801963 58802314 -90714723 - L1MA5 LINE L1 -235 6065 5716 4 1033 210 109 14 123 chr6 58802387 58802460 -90714577 + T-rich Low_complexity Low_complexity 1 65 0 4 1033 736 303 113 35 chr6 58802923 58803506 -90713531 - L1MA5 LINE L1 -580 5723 5093 4 1033 296 113 0 36 chr6 58803646 58803701 -90713336 + (TTTTC)n Simple_repeat Simple_repeat 3 55 0 4 1033 538 268 42 28 chr6 58803712 58803854 -90713183 - ID_B1 SINE B4 0 224 81 4 1033 315 0 0 0 chr6 58803900 58803935 -90713102 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1033 319 245 57 29 chr6 58803939 58804044 -90712993 - L1MA5 LINE L1 -1255 4888 4781 4 1033 180 0 0 0 chr6 58804252 58804272 -90712765 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1033 677 245 64 50 chr6 58804473 58804692 -90712345 + MTEa LTR MaLR 6 227 -152 4 1033 288 332 109 49 chr6 58806847 58807151 -90709886 - L2b LINE L2 -4 3371 3050 4 1033 22 80 0 0 chr6 58808090 58808140 -90708897 + AT_rich Low_complexity Low_complexity 1 50 0 4 1033 219 69 0 0 chr6 58808198 58808227 -90708810 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 4 1033 322 279 134 39 chr6 58808235 58808362 -90708675 - ID_B1 SINE B4 -5 219 81 4 1033 591 190 8 40 chr6 58808562 58808688 -90708349 - B3A SINE B2 -75 123 2 5 1033 265 288 2 84 chr6 58809213 58809333 -90707704 - B1F2 SINE Alu -7 110 1 5 1033 465 274 130 79 chr6 58809632 58809909 -90707128 + B4A SINE B4 2 292 0 5 1033 285 29 0 0 chr6 58809939 58809973 -90707064 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1033 242 233 53 53 chr6 58809973 58810057 -90706980 - Charlie12 DNA MER1_type -2748 125 39 5 1033 263 214 29 0 chr6 58809992 58810062 -90706975 + RMER30 DNA MER1_type 97 168 -34 5 1033 1208 66 12 0 chr6 58810512 58810678 -90706359 + (TTCC)n Simple_repeat Simple_repeat 1 168 0 5 1033 329 233 89 0 chr6 58810949 58811039 -90705998 - MIRb SINE MIR -144 124 27 5 1033 234 250 225 0 chr6 58811755 58811835 -90705202 + PB1D10 SINE Alu 10 107 -10 5 1033 302 211 34 114 chr6 58812269 58812341 -90704696 + Lx9 LINE L1 7458 7520 -124 5 1033 378 0 0 0 chr6 58812341 58812383 -90704654 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1033 302 211 34 114 chr6 58812383 58812486 -90704551 + Lx9 LINE L1 7521 7619 -25 5 1033 31 26 0 0 chr6 58812486 58812524 -90704513 + AT_rich Low_complexity Low_complexity 1 38 0 5 1033 383 280 92 8 chr6 58813550 58813669 -90703368 + ID_B1 SINE B4 86 214 -10 5 1033 216 0 0 0 chr6 58813842 58813866 -90703171 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1033 747 164 8 8 chr6 58814312 58814441 -90702596 - B1_Mus2 SINE Alu -7 140 12 5 1033 228 200 55 0 chr6 58814815 58814925 -90702112 + (TA)n Simple_repeat Simple_repeat 1 116 0 5 1033 250 257 43 0 chr6 58815627 58815697 -90701340 + ID4 SINE ID 2 74 -9 5 1033 879 10 0 0 chr6 58816034 58816134 -90700903 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 5 1033 403 307 21 28 chr6 58816385 58816529 -90700508 + RSINE1 SINE B4 3 145 -20 5 1033 393 58 0 0 chr6 58816529 58816581 -90700456 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1033 1096 197 13 53 chr6 58816626 58816851 -90700186 + B3 SINE B2 1 216 0 5 1033 900 234 93 19 chr6 58816961 58817231 -90699806 + B4A SINE B4 2 291 -1 5 1033 515 266 0 105 chr6 58817377 58817520 -90699517 - ID_B1 SINE B4 -13 211 84 5 1033 4033 99 5 26 chr6 58817538 58818142 -90698895 - Lx LINE L1 0 6654 6064 5 1033 351 65 0 0 chr6 58819932 58819978 -90697059 + (TATG)n Simple_repeat Simple_repeat 3 48 0 5 1033 302 299 4 60 chr6 58821329 58821445 -90695592 + L1_Mur3 LINE L1 5574 5717 -586 5 1033 882 227 40 8 chr6 58821461 58821757 -90695280 + MT2A LTR ERVL 101 452 -81 5 1033 4600 55 38 3 chr6 58821848 58822427 -90694610 - L1Md_F2 LINE L1 0 6582 5984 5 1033 742 198 37 6 chr6 58822470 58822633 -90694404 + L1_Rod LINE L1 5310 5477 -370 5 1033 446 196 18 73 chr6 58823389 58823499 -90693538 + B1_Mur1 SINE Alu 25 128 -21 5 1033 24 0 0 0 chr6 58823502 58823526 -90693511 + AT_rich Low_complexity Low_complexity 1 24 0 5 1033 186 43 0 0 chr6 58823702 58823725 -90693312 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1033 1033 218 5 0 chr6 58825495 58825701 -90691336 - B3 SINE B2 -6 210 4 5 1033 205 209 23 0 chr6 58826119 58826162 -90690875 + GA-rich Low_complexity Low_complexity 2 45 0 5 1033 708 81 0 18 chr6 58826203 58826316 -90690721 - B2_Mm2 SINE B2 -6 189 79 5 1033 189 0 0 0 chr6 58826917 58826938 -90690099 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 1033 341 247 0 0 chr6 58827086 58827159 -90689878 + ID4_ SINE ID 1 73 -10 5 1033 546 29 0 0 chr6 58827169 58827237 -90689800 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 5 1033 356 284 38 25 chr6 58827244 58827403 -90689634 + L1MB1 LINE L1 5928 6088 -101 5 1033 210 171 0 0 chr6 58827414 58827449 -90689588 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 5 1033 810 241 81 10 chr6 58827453 58827650 -90689387 - B3 SINE B2 -5 211 1 5 1033 570 276 57 10 chr6 58827652 58827846 -90689191 - ID_B1 SINE B4 -20 204 2 5 1033 650 268 94 25 chr6 58828955 58829200 -90687837 - RLTR18B LTR ERVK -5 507 246 5 1033 344 138 99 80 chr6 58829224 58829329 -90687708 - RLTR18 LTR ERVK -319 297 173 5 1033 720 232 205 26 chr6 58829955 58830189 -90686848 + RMER1C Other Other 11 286 -1056 5 1033 1079 194 18 0 chr6 58830354 58830576 -90686461 - RLTR27 LTR ERVK -83 226 1 5 1033 245 368 11 0 chr6 58830576 58830671 -90686366 + RMER1C Other Other 53 148 -1194 5 1033 2988 207 83 37 chr6 58830701 58831408 -90685629 + RMER1C Other Other 601 1340 -2 5 1033 232 174 284 83 chr6 58832936 58833049 -90683988 - MTEb LTR MaLR -2 377 224 5 1033 309 122 27 13 chr6 58833104 58833179 -90683858 + C-rich Low_complexity Low_complexity 3 78 0 5 1033 247 326 21 10 chr6 58833316 58833412 -90683625 - MTEb LTR MaLR -205 174 78 5 1033 349 252 16 0 chr6 58834558 58834653 -90682384 - PB1D10 SINE Alu -39 110 12 5 1033 280 0 50 0 chr6 58835372 58835412 -90681625 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1033 470 265 51 98 chr6 58835723 58835999 -90681038 - L1M2 LINE L1 -1055 5088 4826 5 1033 269 96 2 0 chr6 58836127 58836174 -90680863 - L1_Mm LINE L1 -1309 4574 4522 5 1033 361 319 78 0 chr6 58836283 58836399 -90680638 - ID_B1 SINE B4 -18 206 82 5 1033 265 271 93 12 chr6 58836462 58836548 -90680489 - MER58B DNA MER1_type -30 311 219 5 1033 218 245 0 0 chr6 58836954 58837003 -90680034 + CT-rich Low_complexity Low_complexity 2 50 0 5 1033 249 139 0 0 chr6 58837700 58837743 -90679294 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 5 1033 767 210 79 21 chr6 58839013 58839203 -90677834 + B3 SINE B2 4 204 -12 5 1033 289 230 219 9 chr6 58839701 58839815 -90677222 - MER3 DNA MER1_type -55 154 17 5 1033 958 214 55 20 chr6 58840413 58840613 -90676424 + B3 SINE B2 1 207 -9 5 1033 203 79 0 26 chr6 58840708 58840747 -90676290 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 5 1033 948 288 37 112 chr6 58840824 58841060 -90675977 - L1MB8 LINE L1 -12 6166 5941 5 1033 240 59 0 0 chr6 58841060 58841094 -90675943 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 5 1033 433 221 149 9 chr6 58841095 58841209 -90675828 - B1F1 SINE Alu -19 130 1 5 1033 948 288 37 112 chr6 58841209 58841623 -90675414 - L1MB8 LINE L1 -238 5940 5563 5 1033 398 368 10 52 chr6 58841785 58841876 -90675161 + ID SINE ID 1 83 -141 5 1033 222 336 93 93 chr6 58841876 58841994 -90675043 + PB1 SINE Alu 3 120 -7 5 1033 252 0 0 0 chr6 58842060 58842088 -90674949 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 1033 293 290 78 19 chr6 58842758 58843015 -90674022 + Ricksha_0 DNA MuDR 1328 1599 -134 5 1033 183 42 0 0 chr6 58843039 58843063 -90673974 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1033 1219 235 51 7 chr6 58843357 58843653 -90673384 - ORR1D2 LTR MaLR -61 309 1 5 1033 323 328 72 90 chr6 58844756 58844959 -90672078 + MIRc SINE MIR 13 225 -43 5 1033 236 283 62 42 chr6 58845280 58845376 -90671661 - MTE2a LTR MaLR -31 348 251 5 1033 420 287 112 56 chr6 58845603 58845817 -90671220 - MER21B LTR ERV1 -136 727 502 5 1033 316 206 0 60 chr6 58847380 58847447 -90669590 - RMER5 LTR ERV1 0 534 472 5 1033 730 243 28 11 chr6 58847450 58847629 -90669408 - RMER5 LTR ERV1 -23 511 330 5 1033 309 222 62 0 chr6 58847635 58847716 -90669321 - RMER5 LTR ERV1 -428 106 21 5 1033 1035 60 0 0 chr6 58847726 58847859 -90669178 + B1_Mm SINE Alu 15 147 0 5 1033 198 0 0 0 chr6 58847859 58847881 -90669156 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1033 612 73 0 0 chr6 58847881 58847963 -90669074 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 5 1033 22 35 0 0 chr6 58848444 58848473 -90668564 + AT_rich Low_complexity Low_complexity 1 29 0 5 1033 991 239 68 73 chr6 58848576 58848960 -90668077 - ORR1C2 LTR MaLR 0 384 3 5 1033 845 209 374 16 chr6 58849410 58849781 -90667256 - RMER5 LTR ERV1 -9 525 23 5 1033 369 0 0 0 chr6 58849975 58850016 -90667021 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1033 181 228 0 109 chr6 58850387 58850451 -90666586 + L3 LINE CR1 3570 3626 -863 5 1033 1008 322 69 13 chr6 58850897 58851272 -90665765 - MER21B LTR ERV1 -190 673 278 5 1034 600 81 0 0 chr6 58851501 58851588 -90665449 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 1034 269 254 174 9 chr6 58852099 58852214 -90664823 - MIR SINE MIR -116 146 13 5 1034 620 214 34 41 chr6 58852436 58852582 -90664455 + B1_Mur2 SINE Alu 5 149 0 5 1034 306 73 0 0 chr6 58852765 58852806 -90664231 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1034 210 260 0 0 chr6 58853178 58853228 -90663809 + (TATG)n Simple_repeat Simple_repeat 1 50 0 5 1034 261 324 29 0 chr6 58855109 58855214 -90661823 - MIR SINE MIR -26 236 129 5 1034 261 185 0 0 chr6 58856534 58856599 -90660438 + CT-rich Low_complexity Low_complexity 1 65 0 5 1034 227 103 0 25 chr6 58858141 58858181 -90658856 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 5 1034 324 320 20 10 chr6 58858650 58858748 -90658289 - RSINE1 SINE B4 -64 101 3 5 1034 507 186 28 2 chr6 58859003 58859110 -90657927 + MTE2a LTR MaLR 260 376 -3 5 1034 270 0 0 0 chr6 58859140 58859170 -90657867 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1034 233 196 89 0 chr6 58859181 58859237 -90657800 - L1M2 LINE L1 -596 5704 5644 5 1034 545 318 30 12 chr6 58859221 58859549 -90657488 - L1_Mur3 LINE L1 -1539 4341 4008 5 1034 1072 272 85 19 chr6 58859615 58860135 -90656902 - L1M2 LINE L1 -3006 3137 2584 5 1034 394 240 5 20 chr6 58860137 58860334 -90656703 + CT-rich Low_complexity Low_complexity 1 193 0 5 1034 8913 110 19 32 chr6 58860399 58862034 -90655003 - Lx4A LINE L1 0 7058 5429 5 1034 230 272 25 0 chr6 58862950 58863017 -90654020 + MIR SINE MIR 87 166 -110 5 1034 618 104 0 0 chr6 58863591 58863687 -90653350 + (TCCC)n Simple_repeat Simple_repeat 4 99 0 6 1034 231 314 242 23 chr6 58864351 58864566 -90652471 + MER89 LTR ERV1 1 262 -297 6 1034 651 291 92 20 chr6 58864620 58864869 -90652168 + MER89 LTR ERV1 293 559 0 6 1034 274 287 28 113 chr6 58865097 58865203 -90651834 + B1F2 SINE Alu 1 97 -52 6 1034 305 70 0 0 chr6 58865203 58865246 -90651791 + L1_Mur2 LINE L1 4515 4557 -1320 6 1034 778 184 0 0 chr6 58865261 58865402 -90651635 + L1_Mur2 LINE L1 4922 5062 -815 6 1034 2087 160 17 8 chr6 58865402 58865756 -90651281 - RLTR28B LTR ERVL -124 357 1 6 1034 970 314 8 13 chr6 58865764 58866003 -90651034 + B4 SINE B4 55 292 0 6 1034 21 36 0 0 chr6 58866999 58867027 -90650010 + AT_rich Low_complexity Low_complexity 1 28 0 6 1034 604 282 0 31 chr6 58867122 58867250 -90649787 + PB1 SINE Alu 1 124 -3 6 1034 319 275 179 14 chr6 58867408 58867548 -90649489 - L1MB8 LINE L1 -132 6046 5884 6 1034 216 0 0 0 chr6 58869155 58869179 -90647858 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1034 266 268 23 45 chr6 58869730 58869863 -90647174 + CT-rich Low_complexity Low_complexity 3 132 0 6 1034 21 57 0 0 chr6 58869883 58869918 -90647119 + AT_rich Low_complexity Low_complexity 1 35 0 6 1034 680 215 39 32 chr6 58871081 58871235 -90645802 + RSINE1 SINE B4 11 165 0 6 1034 2151 296 119 29 chr6 58871982 58873401 -90643636 - Lx8 LINE L1 -74 7399 5822 6 1034 711 176 84 0 chr6 58873401 58873532 -90643505 - B1_Mur4 SINE Alu -8 142 1 6 1034 4110 248 209 62 chr6 58873532 58874419 -90642618 - Lx8 LINE L1 -1875 5821 5020 6 1034 1157 55 14 0 chr6 58874419 58874565 -90642472 - B1_Mus1 SINE Alu 0 148 1 6 1034 4110 248 209 62 chr6 58874565 58875565 -90641472 - Lx8 LINE L1 -861 5019 3702 6 1034 305 82 20 0 chr6 58875565 58875614 -90641423 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1034 4110 248 209 62 chr6 58875614 58876679 -90640358 - Lx8 LINE L1 -2179 3701 2434 6 1034 296 164 59 15 chr6 58876683 58876751 -90640286 - MTC LTR MaLR 0 421 351 6 1034 474 204 0 0 chr6 58876744 58876832 -90640205 - MTC LTR MaLR -333 88 1 6 1034 791 248 117 28 chr6 58876835 58877159 -90639878 - Lx8 LINE L1 -3450 2430 2078 6 1034 226 191 0 21 chr6 58878817 58878865 -90638172 + B4 SINE B4 246 292 0 6 1034 426 241 48 7 chr6 58878865 58879011 -90638026 + (CA)n Simple_repeat Simple_repeat 1 152 0 6 1034 235 314 98 0 chr6 58879210 58879312 -90637725 - MIRc SINE MIR -72 196 85 6 1034 400 313 28 7 chr6 58880352 58880423 -90636614 + B4A SINE B4 16 85 -207 6 1034 229 339 16 65 chr6 58880423 58880546 -90636491 + PB1D9 SINE Alu 3 119 -1 6 1034 25 0 0 0 chr6 58881450 58881475 -90635562 + AT_rich Low_complexity Low_complexity 1 25 0 6 1034 632 128 18 0 chr6 58881957 58882066 -90634971 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 6 1034 1768 201 92 5 chr6 58886049 58886430 -90630607 - MTD LTR MaLR -5 414 1 6 1034 844 235 46 56 chr6 58886499 58886715 -90630322 - B3 SINE B2 0 216 3 6 1034 1225 254 88 60 chr6 58887352 58887617 -90629420 + RLTR40 LTR ERVK 19 283 -534 6 1034 405 0 0 0 chr6 58887617 58887662 -90629375 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1034 1225 259 75 57 chr6 58887662 58888009 -90629028 + RLTR40 LTR ERVK 284 753 -64 6 1034 197 0 71 0 chr6 58889410 58889438 -90627599 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1034 237 109 36 18 chr6 58889794 58889850 -90627187 + CT-rich Low_complexity Low_complexity 1 57 0 6 1034 258 286 51 13 chr6 58889894 58889972 -90627065 - B1F1 SINE Alu -25 124 44 6 1034 1118 197 24 0 chr6 58890951 58891159 -90625878 + B3 SINE B2 4 216 0 6 1034 186 333 69 29 chr6 58891601 58891703 -90625334 + L3 LINE CR1 3561 3666 -823 6 1034 1144 82 0 0 chr6 58891748 58891895 -90625142 + B1_Mus1 SINE Alu 2 148 0 6 1034 249 33 0 0 chr6 58891895 58891925 -90625112 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1034 370 281 97 0 chr6 58892019 58892133 -90624904 + MER20 DNA MER1_type 1 125 -94 6 1034 209 333 128 56 chr6 58892247 58892498 -90624539 + L3 LINE CR1 3928 4196 -293 6 1034 324 0 0 0 chr6 58892538 58892574 -90624463 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1034 22 0 0 0 chr6 58893495 58893517 -90623520 + AT_rich Low_complexity Low_complexity 1 22 0 6 1034 261 0 0 0 chr6 58893843 58893872 -90623165 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1034 1471 224 75 56 chr6 58895565 58895976 -90621061 + MTD LTR MaLR 1 419 0 6 1034 933 286 10 5 chr6 58896427 58896624 -90620413 + B3 SINE B2 9 206 -10 6 1034 523 279 0 9 chr6 58896687 58896799 -90620238 + RSINE1 SINE B4 13 123 -42 6 1034 1751 177 122 31 chr6 58897337 58897475 -90619562 + MTD LTR MaLR 1 138 -281 6 1034 2258 149 11 3 chr6 58897475 58897839 -90619198 + ORR1B2 LTR MaLR 1 367 0 6 1034 1751 177 122 31 chr6 58897839 58898084 -90618953 + MTD LTR MaLR 139 419 0 6 1034 1967 5 0 0 chr6 58898553 58898774 -90618263 - L1Md_A LINE L1 0 6582 6362 6 1034 387 192 0 141 chr6 58899426 58899445 -90617592 + MT2B LTR ERVL 152 153 -448 6 1034 705 184 95 7 chr6 58899445 58899582 -90617455 + B1_Mur2 SINE Alu 1 149 0 6 1034 431 118 0 12 chr6 58901377 58901463 -90615574 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 1034 187 143 0 58 chr6 58902854 58902879 -90614158 + polypyrimidine Low_complexity Low_complexity 27 49 0 6 1034 776 57 0 9 chr6 58902879 58902986 -90614051 + (TTTC)n Simple_repeat Simple_repeat 1 106 0 6 1034 187 143 0 58 chr6 58902986 58903012 -90614025 + polypyrimidine Low_complexity Low_complexity 1 26 0 6 1034 1211 90 62 0 chr6 58903013 58903190 -90613847 - B2_Mm2 SINE B2 -7 188 1 6 1034 762 228 22 6 chr6 58905318 58905493 -90611544 - B3 SINE B2 -7 186 1 6 1034 897 154 37 6 chr6 58905827 58905990 -90611047 - URR1A DNA MER1_type 0 226 59 6 1034 669 281 7 0 chr6 58907728 58907867 -90609170 + RSINE1 SINE B4 3 142 -23 6 1034 7205 40 18 1 chr6 58907935 58908860 -90608177 - L1Md_F2 LINE L1 0 6582 5642 6 1034 283 287 56 123 chr6 58911456 58911635 -90605402 - MIR SINE MIR -60 202 36 6 1034 189 107 0 0 chr6 58911795 58911823 -90605214 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 6 1034 678 283 0 0 chr6 58911830 58911975 -90605062 - RSINE1 SINE B4 -19 146 2 6 1034 640 290 37 11 chr6 58912006 58912194 -90604843 - B3A SINE B2 -1 197 5 6 1034 347 255 8 150 chr6 58912343 58912463 -90604574 - PB1D7 SINE Alu -15 105 3 6 1034 242 270 49 57 chr6 58913453 58913575 -90603462 - Tigger1 DNA MER2_type -1490 928 808 6 1034 22 0 0 0 chr6 58914904 58914926 -90602111 + AT_rich Low_complexity Low_complexity 1 22 0 6 1034 1186 61 11 58 chr6 58916639 58916830 -90600207 - URR1A DNA MER1_type -1 225 44 6 1034 214 361 111 54 chr6 58917598 58917734 -90599303 - L2a LINE L2 -1 3425 3273 6 1034 865 222 86 0 chr6 58917734 58917932 -90599105 + B3 SINE B2 2 216 0 6 1034 214 361 111 54 chr6 58917932 58918146 -90598891 - L2a LINE L2 -154 3272 3055 6 1034 189 0 0 0 chr6 58918171 58918192 -90598845 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 1034 807 262 14 58 chr6 58920212 58920419 -90596618 + B3A SINE B2 1 198 0 6 1034 1200 103 16 36 chr6 58920808 58921000 -90596037 + B2_Mm2 SINE B2 2 189 -6 6 1034 28 0 0 0 chr6 58921084 58921112 -90595925 + AT_rich Low_complexity Low_complexity 1 28 0 6 1034 331 145 14 14 chr6 58921893 58921963 -90595074 + GA-rich Low_complexity Low_complexity 3 72 0 6 1034 363 215 129 0 chr6 58921988 58922081 -90594956 - PB1D10 SINE Alu -12 105 1 6 1034 24 0 0 0 chr6 58923254 58923278 -90593759 + AT_rich Low_complexity Low_complexity 1 24 0 6 1034 266 20 20 0 chr6 58923310 58923359 -90593678 - L1Md_F2 LINE L1 0 6582 6533 6 1034 460 238 132 0 chr6 58923456 58923607 -90593430 + Lx8 LINE L1 7080 7250 -223 6 1034 268 204 125 10 chr6 58923685 58923789 -90593248 + Lx8 LINE L1 7358 7473 0 6 1034 314 281 45 0 chr6 58924465 58924554 -90592483 - ID_B1 SINE B4 -54 170 78 6 1034 300 257 14 0 chr6 58924661 58924731 -90592306 + ID4_ SINE ID 2 72 -11 6 1034 1072 290 24 3 chr6 58924763 58925136 -90591901 + L1_Mur3 LINE L1 5493 5873 -7 6 1034 260 27 27 0 chr6 58925206 58925243 -90591794 + (CAA)n Simple_repeat Simple_repeat 2 39 0 6 1034 1017 128 0 0 chr6 58926056 58926236 -90590801 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1034 243 0 0 0 chr6 58926524 58926551 -90590486 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1034 241 221 37 161 chr6 58927345 58927426 -90589611 - PB1 SINE Alu -50 77 7 6 1034 420 274 101 76 chr6 58928015 58928173 -90588864 - RSINE1 SINE B4 -1 164 3 6 1034 417 20 0 0 chr6 58929407 58929457 -90587580 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1034 513 0 0 0 chr6 58930021 58930078 -90586959 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1034 375 318 152 8 chr6 58930521 58930778 -90586259 + L2 LINE L2 1901 2194 -1225 6 1034 287 336 54 7 chr6 58930813 58930960 -90586077 + L2 LINE L2 2309 2462 -957 6 1034 206 387 112 5 chr6 58931011 58931216 -90585821 + L2 LINE L2 2655 2881 -538 6 1034 666 268 56 15 chr6 58931742 58931939 -90585098 + B3A SINE B2 11 215 -1 6 1034 219 69 0 0 chr6 58932536 58932565 -90584472 + (TCTCTG)n Simple_repeat Simple_repeat 4 32 0 6 1034 205 217 0 0 chr6 58932606 58932625 -90584412 + (CA)n Simple_repeat Simple_repeat 1 19 0 6 1034 272 78 0 38 chr6 58932625 58932678 -90584359 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 6 1034 205 217 0 0 chr6 58932678 58932704 -90584333 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1034 1211 48 0 0 chr6 58933050 58933197 -90583840 - B1_Mus2 SINE Alu 0 147 1 6 1034 27 73 0 0 chr6 58933594 58933649 -90583388 + AT_rich Low_complexity Low_complexity 1 55 0 6 1034 670 305 157 3 chr6 58934869 58935201 -90581836 + MLT1B LTR MaLR 8 390 0 6 1034 441 54 0 0 chr6 58935212 58935268 -90581769 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1034 1428 142 17 8 chr6 58936740 58936975 -90580062 + ORR1A4 LTR MaLR 93 329 0 6 1034 249 256 35 68 chr6 58938037 58938135 -90578902 - PB1D10 SINE Alu 0 127 35 6 1034 27 29 0 0 chr6 58938192 58938226 -90578811 + AT_rich Low_complexity Low_complexity 1 34 0 6 1034 181 341 11 76 chr6 58939162 58939254 -90577783 + L2c LINE L2 3284 3369 -18 6 1034 246 274 9 95 chr6 58939391 58939404 -90577633 + MT2B LTR ERVL 155 250 -351 7 1034 367 267 33 22 chr6 58939404 58939496 -90577541 + PB1D10 SINE Alu 2 94 -23 7 1034 247 255 118 39 chr6 58939831 58939933 -90577104 - MER21B LTR ERV1 -412 451 342 7 1034 210 229 0 0 chr6 58940812 58940882 -90576155 + (CACCAT)n Simple_repeat Simple_repeat 2 71 0 7 1034 279 301 112 41 chr6 58941081 58941251 -90575786 - MIRb SINE MIR -21 247 66 7 1034 225 338 25 0 chr6 58941724 58941804 -90575233 - ID4 SINE ID 0 83 2 7 1034 678 185 8 8 chr6 58942281 58942401 -90574636 - B1_Mur4 SINE Alu -1 149 30 7 1034 202 158 26 0 chr6 58943209 58943247 -90573790 + T-rich Low_complexity Low_complexity 2 40 0 7 1034 781 236 35 15 chr6 58943961 58944163 -90572874 - B3 SINE B2 -7 209 4 7 1034 482 325 15 59 chr6 58944310 58944513 -90572524 - B3 SINE B2 0 216 23 7 1034 492 312 12 0 chr6 58944513 58944683 -90572354 - Lx9 LINE L1 -275 7369 7198 7 1034 1060 261 69 82 chr6 58944682 58945158 -90571879 + Lx9 LINE L1 6714 7183 -461 7 1034 409 185 12 0 chr6 58946746 58946827 -90570210 - B1_Mur3 SINE Alu 0 149 68 7 1034 559 242 166 26 chr6 58946908 58947137 -90569900 + L1MB3 LINE L1 5480 5740 -443 7 1034 305 324 40 0 chr6 58947139 58947213 -90569824 + RSINE1 SINE B4 3 79 -86 7 1034 880 278 19 27 chr6 58947213 58947587 -90569450 + L1MB3 LINE L1 5811 6181 -2 7 1034 195 162 0 0 chr6 58947631 58947668 -90569369 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1034 774 204 7 13 chr6 58947914 58948063 -90568974 - B1_Mur2 SINE Alu -1 148 1 7 1034 239 288 197 0 chr6 58948293 58948359 -90568678 - ID4 SINE ID -4 79 1 7 1034 768 226 20 61 chr6 58950823 58951021 -90566016 - B3A SINE B2 -1 197 8 7 1034 183 80 0 0 chr6 58951028 58951053 -90565984 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1034 1016 184 47 33 chr6 58951182 58951395 -90565642 - B3 SINE B2 0 216 1 7 1034 22 70 0 0 chr6 58952041 58952084 -90564953 + AT_rich Low_complexity Low_complexity 1 43 0 7 1034 1108 156 4 157 chr6 58952182 58952449 -90564588 + URR1A DNA MER1_type 1 226 0 7 1034 234 0 0 0 chr6 58952800 58952826 -90564211 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1034 306 0 0 0 chr6 58952858 58952892 -90564145 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1034 483 33 0 0 chr6 58952922 58952983 -90564054 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1034 239 310 42 0 chr6 58953004 58953075 -90563962 - ID4_ SINE ID -6 77 4 7 1034 517 262 67 7 chr6 58953191 58953341 -90563696 + ID_B1 SINE B4 65 223 -1 7 1034 3210 207 78 65 chr6 58953996 58954845 -90562192 + RMER13A LTR ERVK 1 860 0 7 1034 15289 54 5 7 chr6 58955057 58957836 -90559201 - L1Md_F2 LINE L1 -2 6580 3810 7 1034 677 33 0 0 chr6 58957836 58957926 -90559111 - L1Md_F2 LINE L1 -3933 1950 1861 7 1034 566 89 0 0 chr6 58957926 58958005 -90559032 - B2_Mm2 SINE B2 -116 79 1 7 1034 520 14 29 0 chr6 58958126 58958195 -90558842 + (TC)n Simple_repeat Simple_repeat 1 71 0 7 1034 366 91 0 0 chr6 58958195 58958249 -90558788 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1034 478 250 57 68 chr6 58958978 58959154 -90557883 + RMER30 DNA MER1_type 2 175 -27 7 1034 233 283 52 104 chr6 58959048 58959182 -90557855 - Charlie12 DNA MER1_type -2746 127 1 7 1034 570 190 0 0 chr6 58959257 58959373 -90557664 + CT-rich Low_complexity Low_complexity 1 116 0 7 1034 182 197 0 141 chr6 58959898 58959969 -90557068 + L3 LINE CR1 909 969 -3520 7 1034 206 178 0 22 chr6 58961066 58961112 -90555925 + T-rich Low_complexity Low_complexity 2 46 0 7 1034 215 120 19 39 chr6 58961434 58961486 -90555551 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1034 217 255 10 10 chr6 58962463 58962562 -90554475 + CT-rich Low_complexity Low_complexity 4 102 0 7 1034 414 0 0 0 chr6 58962683 58962729 -90554308 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1034 343 321 93 90 chr6 58962743 58963099 -90553938 + MLT1B LTR MaLR 27 383 -7 7 1034 394 275 96 37 chr6 58963508 58963644 -90553393 + ID_B1 SINE B4 78 221 -3 7 1034 223 233 149 14 chr6 58964550 58964624 -90552413 + L2b LINE L2 3284 3367 -8 7 1034 209 299 30 40 chr6 58965787 58965888 -90551149 - MIRb SINE MIR -9 259 160 7 1034 235 230 27 49 chr6 58966441 58966624 -90550413 + (TG)n Simple_repeat Simple_repeat 1 179 0 7 1034 358 194 24 42 chr6 58966582 58966832 -90550205 + (TG)n Simple_repeat Simple_repeat 1 245 0 7 1034 522 272 119 39 chr6 58968849 58969235 -90547802 + L1MB8 LINE L1 5743 6159 -19 7 1034 1185 55 7 0 chr6 58969235 58969380 -90547657 + B1_Mm SINE Alu 2 147 0 7 1034 258 56 0 0 chr6 58969605 58969641 -90547396 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1034 354 191 23 0 chr6 58969643 58969774 -90547263 + GA-rich Low_complexity Low_complexity 2 135 0 7 1034 724 314 18 72 chr6 58969781 58970059 -90546978 - B4A SINE B4 -1 291 29 7 1034 252 0 0 0 chr6 58970088 58970116 -90546921 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1034 783 184 7 52 chr6 58970116 58970271 -90546766 - B1_Mur2 SINE Alu 0 149 2 7 1034 252 264 0 0 chr6 58971431 58971484 -90545553 + B3 SINE B2 80 132 -84 7 1034 35 24 0 0 chr6 58971530 58971572 -90545465 + AT_rich Low_complexity Low_complexity 1 42 0 7 1034 232 174 0 0 chr6 58973822 58973868 -90543169 + T-rich Low_complexity Low_complexity 1 46 0 7 1034 180 182 0 0 chr6 58974571 58974615 -90542422 + CT-rich Low_complexity Low_complexity 3 46 0 7 1034 633 253 82 33 chr6 58975243 58975262 -90541775 - B3A SINE B2 -1 197 184 7 1034 315 0 0 0 chr6 58975262 58975297 -90541740 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1034 746 207 116 0 chr6 58975297 58975461 -90541576 - B3 SINE B2 -29 187 5 7 1034 1605 206 88 45 chr6 58975576 58975916 -90541121 + MTC LTR MaLR 9 370 -51 7 1034 324 0 0 0 chr6 58975916 58975952 -90541085 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1034 1605 206 88 45 chr6 58975952 58976007 -90541030 + MTC LTR MaLR 371 421 0 7 1034 554 254 105 35 chr6 58976710 58976967 -90540070 - RLTR42-int LTR ERVK -4134 1388 1114 7 1034 2068 203 134 87 chr6 58977512 58978096 -90538941 + RMER19C LTR ERVK 1 611 0 7 1034 234 105 0 0 chr6 58978219 58978257 -90538780 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 7 1034 262 287 17 77 chr6 58978415 58978532 -90538505 - RLTR42-int LTR ERVK -3748 1774 1665 7 1034 430 301 109 7 chr6 58979647 58979794 -90537243 + RSINE1 SINE B4 2 163 -2 7 1034 762 164 52 0 chr6 58980452 58980586 -90536451 + B1_Mur3 SINE Alu 9 149 0 7 1034 486 0 0 0 chr6 58980592 58980646 -90536391 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 7 1034 699 139 0 0 chr6 58982279 58982394 -90534643 + (TCCC)n Simple_repeat Simple_repeat 3 117 0 7 129 215 74 0 0 chr6 58982394 58982421 -90534616 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7 1035 1163 82 0 0 chr6 58982421 58982568 -90534469 - B1_Mus2 SINE Alu 0 147 1 7 1035 297 0 0 0 chr6 58982644 58982677 -90534360 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 7 1035 193 309 18 0 chr6 58983540 58983595 -90533442 - MIRc SINE MIR -173 95 40 7 1035 202 128 0 25 chr6 58983658 58983698 -90533339 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 7 1035 435 107 0 0 chr6 58983882 58983957 -90533080 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 1035 588 256 90 8 chr6 58983975 58984109 -90532928 - B3A SINE B2 -27 171 27 7 1035 1192 54 7 0 chr6 58984134 58984281 -90532756 - B1_Mus1 SINE Alu 0 148 1 7 1035 3487 114 5 2 chr6 58984668 58985298 -90531739 - Lx4A LINE L1 -1067 5991 5357 7 1035 474 209 0 0 chr6 58985422 58985551 -90531486 + GA-rich Low_complexity Low_complexity 1 129 0 7 1035 715 291 156 26 chr6 58985636 58985938 -90531099 - Lx6 LINE L1 -28 7432 7092 7 1035 683 255 71 0 chr6 58985940 58986124 -90530913 - Lx5 LINE L1 -370 6680 6484 7 1035 617 271 90 63 chr6 58986127 58986439 -90530598 - Lx5 LINE L1 -688 6362 6011 7 1035 1001 141 0 6 chr6 58986448 58986612 -90530425 + Lx5 LINE L1 5628 5790 -1260 7 1035 1663 187 18 122 chr6 58987437 58987881 -90529156 + RMER10B LTR ERVL 1 398 0 7 1035 22 35 0 0 chr6 58990450 58990479 -90526558 + AT_rich Low_complexity Low_complexity 1 29 0 7 1035 516 292 241 16 chr6 58991900 58992273 -90524764 + Charlie1b DNA MER1_type 18 474 -49 7 1035 3836 221 69 36 chr6 58992543 58994534 -90522503 - Lx9 LINE L1 -791 6853 4751 7 1035 5455 62 17 0 chr6 58994573 58995296 -90521741 + L1Md_F2 LINE L1 370 1104 -5512 7 1035 19320 70 1 0 chr6 58995298 58997960 -90519077 + L1Md_F2 LINE L1 2922 5586 -297 7 1035 7880 58 9 0 chr6 58997960 58998945 -90518092 + L1Md_F2 LINE L1 5587 6580 -2 7 1035 399 164 0 0 chr6 58998956 58999023 -90518014 + L1_Rod LINE L1 2300 2366 -3481 7 1035 1092 205 68 0 chr6 58999014 58999307 -90517730 + L1_Rod LINE L1 3234 3546 -2301 7 1035 411 179 12 117 chr6 58999333 58999504 -90517533 - L1_Rod LINE L1 -4103 1744 1592 7 1035 2440 178 42 4 chr6 58999504 58999671 -90517366 - RLTR28 LTR ERVL 0 524 358 7 1035 198 0 0 0 chr6 58999671 58999693 -90517344 + (G)n Simple_repeat Simple_repeat 1 22 0 7 1035 2440 178 42 4 chr6 58999693 59000000 -90517037 - RLTR28 LTR ERVL -167 357 33 7 1035 718 205 6 42 chr6 59000014 59000116 -90516921 - L1_Rod LINE L1 -4268 1612 1505 1 1035 2122 165 23 51 chr6 59000116 59000505 -90516532 - ORR1C1 LTR MaLR 0 378 1 2 1035 718 188 0 43 chr6 59000505 59000580 -90516457 - L1_Rod LINE L1 -4336 1511 1442 1 1035 438 53 0 0 chr6 59000592 59000649 -90516388 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1035 353 188 73 0 chr6 59000658 59000754 -90516283 - L1_Rod LINE L1 -4414 1433 1331 1 1035 4020 114 16 2 chr6 59000754 59001335 -90515702 + Lx2 LINE L1 6408 6996 -1 4 1035 967 240 10 7 chr6 59001382 59001680 -90515357 - L1_Rod LINE L1 -6264 1344 1046 1 1035 443 235 51 0 chr6 59001809 59001907 -90515130 + RLTR28B LTR ERVL 1 103 -378 5 1035 534 291 21 26 chr6 59001908 59002102 -90514935 - L1_Rod LINE L1 -6973 635 443 1 1035 798 275 78 33 chr6 59003443 59003714 -90513323 - RMER19C LTR ERVK -328 283 1 6 1035 471 78 0 0 chr6 59004749 59004813 -90512224 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1035 871 231 36 31 chr6 59005452 59005644 -90511393 + B3 SINE B2 24 216 0 8 1035 224 245 0 0 chr6 59006229 59006282 -90510755 + T-rich Low_complexity Low_complexity 1 53 0 9 1035 650 121 17 0 chr6 59006286 59006402 -90510635 - Lx LINE L1 -1 6653 6536 1 1035 641 304 50 11 chr6 59006410 59006698 -90510339 - L1M2 LINE L1 -513 5778 5476 1 1035 23 25 0 24 chr6 59006700 59006721 -90510316 + AT_rich Low_complexity Low_complexity 1 21 0 1 1035 1140 75 7 0 chr6 59006721 59006867 -90510170 + B1_Mus2 SINE Alu 1 147 0 1 1035 23 25 0 24 chr6 59006867 59006886 -90510151 + AT_rich Low_complexity Low_complexity 1 19 0 1 1035 725 277 45 0 chr6 59006913 59007115 -90509922 - B3 SINE B2 -5 211 1 1 1035 658 330 58 22 chr6 59007116 59007707 -90509330 - L1_Mur3 LINE L1 -421 5459 4848 1 1035 918 169 112 97 chr6 59007710 59007773 -90509264 - RLTR25B LTR ERVK 0 1028 969 1 1035 333 0 0 0 chr6 59007773 59007810 -90509227 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1035 918 169 112 97 chr6 59007810 59008014 -90509023 - RLTR25B LTR ERVK -60 968 757 1 1035 4170 174 41 99 chr6 59008286 59009294 -90507743 - RLTR25A LTR ERVK -154 949 1 1 1035 420 288 56 43 chr6 59009310 59009542 -90507495 - L1M2 LINE L1 -1278 4865 4631 1 1035 688 322 0 24 chr6 59009592 59009805 -90507232 - B3 SINE B2 -7 209 2 2 1035 591 270 0 0 chr6 59009822 59009948 -90507089 - B1_Mur1 SINE Alu 0 149 24 2 1035 666 252 40 11 chr6 59010188 59010366 -90506671 + B3 SINE B2 1 192 -6 2 1035 791 180 14 28 chr6 59010518 59010661 -90506376 - B1_Mur1 SINE Alu 0 149 9 2 1035 567 300 66 35 chr6 59010529 59010726 -90506311 - ID_B1 SINE B4 -7 217 15 2 1035 1360 279 31 14 chr6 59010948 59011373 -90505664 - Lx6 LINE L1 -19 7441 7010 2 1035 702 328 34 77 chr6 59012175 59012472 -90504565 - B4 SINE B4 0 292 9 2 1035 25 0 0 0 chr6 59012515 59012540 -90504497 + AT_rich Low_complexity Low_complexity 1 25 0 2 1035 327 327 19 0 chr6 59013839 59013946 -90503091 - PB1 SINE Alu -18 109 1 2 1035 456 19 0 0 chr6 59014379 59014432 -90502605 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1035 221 329 134 18 chr6 59014764 59014928 -90502109 - MIR SINE MIR -18 244 62 3 1035 780 241 113 25 chr6 59015039 59015104 -90501933 - B4 SINE B4 -2 290 223 3 1035 186 71 0 0 chr6 59015104 59015132 -90501905 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 1035 780 241 113 25 chr6 59015132 59015270 -90501767 - B4 SINE B4 -70 222 70 3 1035 21 0 0 0 chr6 59016234 59016255 -90500782 + AT_rich Low_complexity Low_complexity 1 21 0 3 1035 275 284 11 43 chr6 59016383 59016475 -90500562 + L2a LINE L2 3338 3426 0 3 1035 801 265 63 5 chr6 59017821 59018026 -90499011 - ID_B1 SINE B4 0 224 8 3 1035 419 280 34 0 chr6 59018189 59018307 -90498730 - B1_Mur3 SINE Alu -26 123 2 3 1035 194 270 92 75 chr6 59018993 59019113 -90497924 + MIRb SINE MIR 146 267 -1 3 1035 22 0 0 0 chr6 59019114 59019136 -90497901 + AT_rich Low_complexity Low_complexity 1 22 0 3 1035 21 0 0 0 chr6 59019213 59019234 -90497803 + AT_rich Low_complexity Low_complexity 1 21 0 3 1035 184 372 20 41 chr6 59019642 59019740 -90497297 - L2c LINE L2 -20 3367 3272 4 1035 1659 218 64 0 chr6 59020345 59020735 -90496302 - MTD LTR MaLR -2 417 3 4 1035 28 0 0 0 chr6 59020954 59020982 -90496055 + AT_rich Low_complexity Low_complexity 1 28 0 4 1035 366 225 56 0 chr6 59021097 59021168 -90495869 - ID4 SINE ID -7 76 2 4 1035 22 0 0 0 chr6 59021247 59021269 -90495768 + AT_rich Low_complexity Low_complexity 1 22 0 4 1035 214 250 82 14 chr6 59021329 59021402 -90495635 - L2c LINE L2 0 3387 3310 4 1035 592 325 111 32 chr6 59021612 59021955 -90495082 + LTR40b LTR ERVL 88 457 -5 4 1035 387 0 0 0 chr6 59022469 59022512 -90494525 + (TAA)n Simple_repeat Simple_repeat 1 43 0 4 1035 698 347 109 22 chr6 59022576 59022988 -90494049 + MER21B LTR ERV1 207 654 -209 4 1035 207 0 0 0 chr6 59023181 59023204 -90493833 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1035 505 245 76 105 chr6 59023260 59023630 -90493407 + RLTR10D LTR ERVK 1 359 0 5 1035 9148 263 31 26 chr6 59023674 59026757 -90490280 + IAP-d-int LTR ERVK 22 3122 -3420 5 1035 4722 292 15 12 chr6 59026822 59028689 -90488348 + IAP-d-int LTR ERVK 3230 5083 -1459 5 1035 1321 222 26 26 chr6 59028883 59029235 -90487802 + IAP-d-int LTR ERVK 6190 6541 -1 5 1035 813 262 43 52 chr6 59029236 59029593 -90487444 + RLTR10D LTR ERVK 1 411 0 5 1035 378 0 0 0 chr6 59030961 59031003 -90486034 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1035 21 0 0 0 chr6 59031284 59031305 -90485732 + AT_rich Low_complexity Low_complexity 1 21 0 5 1035 1258 106 0 26 chr6 59031317 59031511 -90485526 - B2_Mm2 SINE B2 -4 191 3 5 1035 1083 88 0 0 chr6 59031546 59031682 -90485355 - B1_Mm SINE Alu -11 136 1 5 1035 9715 156 38 11 chr6 59031711 59032345 -90484692 + Lx2B LINE L1 1746 2382 -3504 5 1035 3122 63 5 0 chr6 59032345 59032739 -90484298 - MTA_Mm LTR MaLR 0 396 1 5 1035 9715 156 38 11 chr6 59032739 59034102 -90482935 + Lx2B LINE L1 2383 3795 -2091 5 1035 8700 138 16 11 chr6 59034101 59036797 -90480240 + Lx2B LINE L1 4275 6999 -1 5 1035 411 229 0 24 chr6 59036793 59036918 -90480119 + L1_Rod LINE L1 1304 1425 -4422 5 1035 1115 82 7 0 chr6 59036919 59037066 -90479971 + B1_Mus1 SINE Alu 1 148 0 5 1035 1536 213 106 11 chr6 59037098 59037714 -90479323 + L1_Rod LINE L1 1361 2034 -3813 5 1035 3963 208 42 66 chr6 59037727 59038791 -90478246 + Lx9 LINE L1 6413 7451 -193 5 1035 275 368 47 27 chr6 59038940 59039088 -90477949 + LTR33B LTR ERVL 35 185 -318 6 1035 976 291 17 0 chr6 59040277 59040518 -90476519 - MTD LTR MaLR -174 245 1 6 1035 423 303 154 48 chr6 59040518 59040726 -90476311 + B4A SINE B4 37 266 -26 6 1035 240 214 0 0 chr6 59040883 59040939 -90476098 + A-rich Low_complexity Low_complexity 1 56 0 6 1035 523 227 125 18 chr6 59041032 59041144 -90475893 + RSINE1 SINE B4 2 125 -40 6 1035 349 333 123 8 chr6 59041224 59041354 -90475683 - RSINE1 SINE B4 -19 146 2 6 1035 603 311 135 4 chr6 59041530 59041775 -90475262 + RMER1B Other Other 73 349 -717 6 1035 593 290 48 32 chr6 59041798 59041987 -90475050 + RMER1B Other Other 154 345 -721 6 1035 3087 206 17 9 chr6 59041998 59042636 -90474401 + RMER1B Other Other 413 1055 -11 6 1035 1353 293 93 23 chr6 59043299 59043816 -90473221 + Lx8 LINE L1 6263 6815 -658 6 1035 1126 308 53 55 chr6 59043841 59044384 -90472653 + Lx8 LINE L1 6925 7466 -7 6 1035 483 304 161 33 chr6 59044434 59044825 -90472212 + L1M5 LINE L1 4073 4513 -1633 6 1035 686 275 25 55 chr6 59044897 59045097 -90471940 + ID_B1 SINE B4 25 218 -6 7 1035 454 100 400 0 chr6 59045121 59045231 -90471806 + L1_Mur1 LINE L1 4959 5112 -774 7 1035 4467 63 0 65 chr6 59045235 59045865 -90471172 + L1_Mus2 LINE L1 5978 6566 0 7 1035 4997 112 1 1 chr6 59045880 59046668 -90470369 - L1_Mm LINE L1 -1374 4509 3722 7 1035 555 29 0 0 chr6 59047031 59047100 -90469937 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 7 1035 23 86 0 0 chr6 59048263 59048321 -90468716 + AT_rich Low_complexity Low_complexity 1 58 0 7 1035 1298 256 55 77 chr6 59049597 59050091 -90466946 + RMER1B Other Other 45 527 -539 7 1035 1804 238 120 39 chr6 59050105 59050806 -90466231 + RMER1B Other Other 1 1048 -18 7 1035 265 211 76 38 chr6 59052651 59052730 -90464307 - RMER10A LTR ERVL -43 399 318 7 1035 301 324 21 35 chr6 59052766 59052907 -90464130 + L1MEd LINE L1 957 1095 -5024 7 1035 198 156 0 0 chr6 59052913 59052958 -90464079 + GA-rich Low_complexity Low_complexity 2 46 0 8 1035 213 154 0 0 chr6 59052961 59053000 -90464037 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1035 376 62 0 0 chr6 59053043 59053091 -90463946 + HAL1-3A_ME LINE L1 1976 2023 -835 8 1035 428 141 0 39 chr6 59053133 59053173 -90463864 + polypurine Low_complexity Low_complexity 2 38 0 8 1035 189 0 0 0 chr6 59053173 59053194 -90463843 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1035 428 141 0 39 chr6 59053194 59053256 -90463781 + polypurine Low_complexity Low_complexity 39 100 0 8 1035 803 29 0 10 chr6 59053667 59053770 -90463267 + (CA)n Simple_repeat Simple_repeat 2 103 0 8 1035 792 249 40 40 chr6 59054029 59054301 -90462736 + L1MB7 LINE L1 5880 6151 -33 8 1035 2407 159 47 0 chr6 59054752 59055154 -90461883 - MTC LTR MaLR 0 421 1 8 1035 272 302 192 0 chr6 59055200 59055372 -90461665 + L2a LINE L2 3221 3425 -1 8 1035 1025 39 0 8 chr6 59055877 59056008 -90461029 + (GAA)n Simple_repeat Simple_repeat 3 132 0 9 1035 2252 274 51 19 chr6 59056014 59056638 -90460399 + MTE-int LTR MaLR 898 1541 -39 9 1035 706 314 109 34 chr6 59056625 59056945 -90460092 + ORR1E LTR MaLR 8 351 -8 9 1035 240 336 122 69 chr6 59057383 59057849 -90459188 + MARNA DNA Mariner 77 567 -19 9 1035 568 330 87 46 chr6 59058082 59058508 -90458529 + L2a LINE L2 2670 3113 -313 9 1035 256 24 24 24 chr6 59058676 59058718 -90458319 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 9 1035 1095 50 0 0 chr6 59058719 59058858 -90458179 - B1_Mus1 SINE Alu 0 148 10 9 1035 467 202 137 83 chr6 59058726 59058931 -90458106 - B4A SINE B4 -72 220 5 9 1035 333 296 31 39 chr6 59058891 59059021 -90458016 + RSINE1 SINE B4 34 162 -3 9 1035 278 250 132 39 chr6 59059046 59059175 -90457862 + L2a LINE L2 3278 3418 -8 9 1035 22 0 0 0 chr6 59059637 59059659 -90457378 + AT_rich Low_complexity Low_complexity 1 22 0 9 1035 438 94 0 0 chr6 59059704 59059768 -90457269 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1035 226 226 81 61 chr6 59059830 59059929 -90457108 - L3 LINE CR1 -2262 2227 2127 1 1035 1105 55 14 0 chr6 59060283 59060428 -90456609 - B1_Mus1 SINE Alu -1 147 1 1 1035 518 318 13 9 chr6 59060430 59060655 -90456382 - L1MB1 LINE L1 -82 6086 5861 1 1035 1309 243 11 6 chr6 59060679 59061115 -90455922 - Lx2B LINE L1 -5 7053 6519 1 1035 481 297 38 30 chr6 59061112 59061376 -90455661 - L1MB1 LINE L1 -295 5873 5608 1 1035 5747 148 40 11 chr6 59061819 59062804 -90454233 - Lx4B LINE L1 -8 7050 6038 1 1035 2384 114 10 13 chr6 59062806 59063204 -90453833 + Lx4A LINE L1 4603 4999 -878 1 1035 1720 177 34 20 chr6 59063205 59063638 -90453399 + RMER17C LTR ERVK 20 439 -519 1 1035 5159 119 24 4 chr6 59063644 59064648 -90452389 + Lx4A LINE L1 4992 6020 -1038 1 1035 386 222 68 31 chr6 59064649 59064845 -90452192 - L1M2 LINE L1 -696 5616 5402 1 1035 2062 275 118 27 chr6 59064965 59065811 -90451226 + Lx8 LINE L1 6549 7471 -2 1 1035 276 347 94 10 chr6 59065822 59065918 -90451119 + B4A SINE B4 8 111 -181 1 1035 679 294 6 6 chr6 59066225 59066396 -90450641 + B4A SINE B4 104 274 -18 1 1035 480 35 0 0 chr6 59066431 59066489 -90450548 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1035 790 230 25 121 chr6 59066930 59067128 -90449909 - B3 SINE B2 -15 180 2 1 1035 24 0 0 0 chr6 59067163 59067187 -90449850 + AT_rich Low_complexity Low_complexity 1 24 0 1 1035 255 302 20 50 chr6 59067187 59067288 -90449749 - MLT1C LTR MaLR -32 435 270 1 1035 693 293 71 48 chr6 59067717 59068011 -90449026 + RMER15 LTR ERVL 275 575 0 1 1035 582 327 92 30 chr6 59068069 59068551 -90448486 + MLT1F-int LTR MaLR 1 664 -707 1 1035 284 261 33 43 chr6 59068620 59068712 -90448325 + MLT1F-int LTR MaLR 725 815 -674 1 1035 569 281 34 14 chr6 59068936 59069084 -90447953 + RSINE1 SINE B4 4 154 -11 1 1035 681 24 0 0 chr6 59069191 59069274 -90447763 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1035 655 254 6 23 chr6 59069436 59069613 -90447424 + B3A SINE B2 25 198 0 1 1035 486 237 49 176 chr6 59069820 59069900 -90447137 + RMER15 LTR ERVL 1 62 -513 1 1035 1000 175 74 46 chr6 59069900 59070116 -90446921 - URR1A DNA MER1_type -4 222 1 1 1035 486 237 49 176 chr6 59070116 59070240 -90446797 + RMER15 LTR ERVL 63 179 -396 1 1035 2540 281 38 55 chr6 59070238 59071150 -90445887 - Tigger7 DNA MER2_type -1009 1482 586 1 1035 4070 80 18 2 chr6 59071162 59071710 -90445327 - L1_Mus3 LINE L1 -8 6630 6074 1 1035 672 285 47 4 chr6 59071740 59071994 -90445043 + L1MA5 LINE L1 4799 5063 -1080 1 1035 431 170 0 21 chr6 59072009 59072105 -90444932 + CT-rich Low_complexity Low_complexity 1 94 0 1 1035 242 251 41 103 chr6 59072105 59072376 -90444661 - L1_Rod LINE L1 -2241 3606 3353 1 1035 258 269 15 0 chr6 59072503 59072570 -90444467 + RMER15-int LTR ERVL 4555 4622 -377 1 1035 566 293 90 43 chr6 59072581 59072881 -90444156 + Lx9 LINE L1 6891 7204 -440 1 1035 278 421 0 0 chr6 59072895 59073059 -90443978 + Lx8 LINE L1 7164 7327 -146 1 1035 183 72 47 23 chr6 59073059 59073102 -90443935 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1035 906 243 68 48 chr6 59073254 59073505 -90443532 + Lx8 LINE L1 6333 6588 -885 1 1035 36324 30 0 0 chr6 59073542 59079987 -90437050 - L1Md_T LINE L1 0 6585 44 1 1035 1446 332 53 28 chr6 59079993 59080807 -90436230 + Lx8 LINE L1 6639 7472 -1 1 1035 329 241 216 11 chr6 59080812 59080988 -90436049 + L1MA5 LINE L1 5316 5527 -773 1 1035 338 327 10 0 chr6 59081009 59081113 -90435924 - Lx8 LINE L1 -235 7238 7134 1 1035 282 260 27 0 chr6 59081119 59081192 -90435845 - ID4 SINE ID -8 75 1 1 1035 240 158 0 0 chr6 59081455 59081493 -90435544 - RMER30 DNA MER1_type -158 44 7 1 1035 374 255 32 11 chr6 59081554 59081649 -90435388 + B4A SINE B4 2 98 -194 1 1035 518 157 0 0 chr6 59081649 59081732 -90435305 - Lx5 LINE L1 -149 6901 6819 1 1035 238 106 0 21 chr6 59081728 59081776 -90435261 + Lx5 LINE L1 7004 7050 0 1 1035 643 308 36 36 chr6 59081787 59081979 -90435058 + B4 SINE B4 81 272 -20 1 1035 276 30 0 0 chr6 59081981 59082014 -90435023 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1035 408 20 0 0 chr6 59082014 59082062 -90434975 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1035 402 324 49 0 chr6 59082075 59082260 -90434777 + L1MA5 LINE L1 5822 6015 -285 1 1035 25538 132 15 4 chr6 59083155 59085681 -90431356 - L1_Mus4 LINE L1 -234 6402 3862 1 1035 423 0 0 0 chr6 59085681 59085728 -90431309 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1035 25538 147 13 7 chr6 59085728 59086344 -90430693 - L1_Mus4 LINE L1 -2022 3861 3260 1 1035 4858 50 0 0 chr6 59086344 59086925 -90430112 - L1Md_F2 LINE L1 -13 6569 5989 1 1035 25538 152 26 7 chr6 59086925 59089410 -90427627 - L1_Mus4 LINE L1 -2624 3259 700 1 1035 437 50 17 0 chr6 59089683 59089743 -90427294 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 1 1035 604 184 28 0 chr6 59089805 59089914 -90427123 - B1_Mur3 SINE Alu -29 120 9 1 1035 272 200 65 112 chr6 59089825 59089932 -90427105 - MT2B LTR ERVL -348 253 152 1 1035 228 350 38 19 chr6 59090406 59090511 -90426526 + L2a LINE L2 3264 3370 -56 1 1035 180 0 0 0 chr6 59090548 59090568 -90426469 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 1 1035 710 207 12 17 chr6 59090699 59090862 -90426175 - MTC LTR MaLR -1 420 219 1 1035 2196 233 13 30 chr6 59090864 59091552 -90425485 + RMER1B Other Other 47 871 -195 1 1035 1631 209 33 3 chr6 59091553 59091860 -90425177 - MTC LTR MaLR -105 316 1 1 1035 420 347 18 0 chr6 59093881 59094051 -90422986 + Lx8 LINE L1 6837 7009 -464 1 1035 261 286 87 109 chr6 59094997 59095181 -90421856 - MIRb SINE MIR -53 215 36 1 1035 353 280 96 9 chr6 59095571 59095791 -90421246 + Lx8 LINE L1 7176 7414 -59 1 1035 606 136 25 0 chr6 59095791 59095909 -90421128 + GA-rich Low_complexity Low_complexity 1 121 0 1 1035 250 284 109 73 chr6 59097200 59097310 -90419727 - Tigger5 DNA MER2_type -2282 124 11 1 1035 557 306 64 14 chr6 59097999 59098280 -90418757 + MER44B DNA MER2_type 12 368 -182 1 1035 602 157 186 29 chr6 59098436 59098646 -90418391 - Lx7 LINE L1 -17 7679 7437 1 1035 2055 259 147 19 chr6 59098643 59099274 -90417763 + Lx6 LINE L1 6694 7405 -55 1 1035 309 118 0 0 chr6 59099337 59099388 -90417649 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1035 290 226 60 0 chr6 59099488 59099572 -90417465 + Lx7 LINE L1 7170 7258 -438 1 1035 319 232 115 40 chr6 59099568 59099716 -90417321 - Lx7 LINE L1 -1249 6447 6289 1 1035 358 350 19 0 chr6 59100210 59100313 -90416724 + PB1D10 SINE Alu 4 108 -9 1 1035 261 239 60 0 chr6 59100931 59100998 -90416039 + MTE-int LTR MaLR 567 637 -733 1 1035 4041 68 24 6 chr6 59101027 59101559 -90415478 - L1_Mus1 LINE L1 0 6567 6026 1 1035 453 271 132 22 chr6 59101566 59101702 -90415335 + MTE-int LTR MaLR 720 870 -710 1 1035 268 311 0 0 chr6 59101765 59101826 -90415211 - ORR1D1 LTR MaLR -249 125 65 1 1035 1384 223 106 15 chr6 59101872 59102277 -90414760 - RMER1C Other Other -17 1325 884 1 1035 570 243 53 101 chr6 59102451 59102620 -90414417 - ORR1E LTR MaLR -4 355 195 1 1035 354 23 0 0 chr6 59102620 59102663 -90414374 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1035 1223 210 135 3 chr6 59102767 59103101 -90413936 + RMER1B Other Other 687 1064 -2 1 1035 192 111 0 0 chr6 59103383 59103419 -90413618 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 1035 341 317 139 34 chr6 59103808 59104017 -90413020 + MIRb SINE MIR 19 249 -19 1 1035 743 267 11 16 chr6 59104441 59104624 -90412413 + B3A SINE B2 1 182 -16 1 1035 423 282 25 46 chr6 59104677 59104874 -90412163 + MER44B DNA MER2_type 355 547 -3 1 1035 411 73 0 0 chr6 59105382 59105437 -90411600 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 1 1035 410 319 11 108 chr6 59105473 59105649 -90411388 - RSINE1 SINE B4 -2 163 5 1 1035 310 329 70 70 chr6 59105962 59106233 -90410804 + B4 SINE B4 3 273 -19 1 1035 324 0 0 0 chr6 59106260 59106296 -90410741 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1035 299 288 48 51 chr6 59106322 59106668 -90410369 + L1MA5A LINE L1 5107 5459 -421 1 1035 647 251 68 56 chr6 59106665 59106996 -90410041 + L1_Mur3 LINE L1 2717 3080 -3063 1 1035 579 29 0 0 chr6 59106997 59107066 -90409971 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1035 570 260 0 6 chr6 59107079 59107249 -90409788 + L1_Mur3 LINE L1 3281 3449 -2431 1 1035 597 231 29 22 chr6 59107276 59107413 -90409624 + B1_Mur1 SINE Alu 9 146 -3 1 1035 306 0 0 0 chr6 59107421 59107455 -90409582 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 1035 486 241 256 0 chr6 59107796 59107995 -90409042 + Lx8 LINE L1 6240 6489 -984 1 1035 1298 275 112 11 chr6 59107990 59108427 -90408610 + Lx8 LINE L1 6859 7339 -134 1 1035 599 280 142 9 chr6 59108604 59108943 -90408094 + L1MA5A LINE L1 5536 5919 -378 1 1035 544 207 29 7 chr6 59109319 59109455 -90407582 - Lx6 LINE L1 -421 7039 6901 1 1035 2967 85 5 8 chr6 59109461 59109862 -90407175 - MTB LTR MaLR 0 400 1 1 1035 1305 236 83 9 chr6 59109919 59110256 -90406781 + Lx6 LINE L1 7086 7447 -13 1 1035 303 289 26 0 chr6 59110938 59111052 -90405985 + L1MB7 LINE L1 6041 6157 -27 1 1035 453 19 0 0 chr6 59112899 59112953 -90404084 + (TAA)n Simple_repeat Simple_repeat 1 54 0 1 1035 245 307 67 0 chr6 59112957 59113032 -90404005 + ID4_ SINE ID 2 81 -2 1 129 578 240 34 39 chr6 59113324 59113532 -90403505 + L1_Rod LINE L1 472 678 -6494 1 1036 1257 248 50 57 chr6 59113542 59113766 -90403271 - Lx9 LINE L1 -902 6742 6517 1 1036 405 0 0 0 chr6 59113766 59113811 -90403226 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1036 1257 282 58 67 chr6 59113811 59114135 -90402902 - Lx9 LINE L1 -1128 6516 6057 1 1036 980 266 4 4 chr6 59114182 59114424 -90402613 + Lx9 LINE L1 7105 7346 -298 1 1036 1994 79 0 0 chr6 59114425 59114728 -90402309 + L1_Mus2 LINE L1 1547 1849 -4034 1 1036 10181 118 1 0 chr6 59114725 59116371 -90400666 + L1_Mus2 LINE L1 2945 4592 -1291 1 1036 392 41 0 0 chr6 59116368 59116417 -90400620 + L1Md_F2 LINE L1 5885 5933 -649 1 1036 7104 79 3 1 chr6 59116456 59117576 -90399461 + L1_Mus2 LINE L1 5445 6566 0 1 1036 1506 165 95 64 chr6 59119018 59119406 -90397631 + RLTR9D LTR ERVK 1 400 -3 1 1036 288 296 100 18 chr6 59119573 59119683 -90397354 + PB1D7 SINE Alu 2 120 0 1 1036 238 427 51 0 chr6 59119728 59119845 -90397192 - L4 LINE RTE -869 1160 1038 1 1036 963 211 78 23 chr6 59120054 59120272 -90396765 + RLTR26 LTR ERVK 1 230 -412 1 1036 522 0 0 0 chr6 59120284 59120342 -90396695 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1036 477 321 18 54 chr6 59120412 59120580 -90396457 + B4A SINE B4 4 165 -127 1 1036 1608 236 27 42 chr6 59121535 59121938 -90395099 - MTD LTR MaLR -5 414 18 1 1036 207 100 0 0 chr6 59122279 59122309 -90394728 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1036 198 0 0 0 chr6 59122311 59122333 -90394704 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1036 1006 316 92 38 chr6 59122357 59122969 -90394068 - Lx8 LINE L1 -208 7436 6649 2 1036 405 0 0 0 chr6 59123041 59123086 -90393951 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2 1036 2906 262 58 45 chr6 59123302 59124728 -90392309 - Lx8 LINE L1 -1668 5976 4497 2 1036 234 191 309 0 chr6 59124728 59124796 -90392241 + ORR1C1 LTR MaLR 290 378 0 2 1036 2286 227 72 39 chr6 59124796 59125383 -90391654 + ORR1C1-int LTR MaLR 1 606 -903 2 1036 4000 79 70 7 chr6 59125383 59125956 -90391081 + Lx3_Mus LINE L1 6393 7001 -8 2 1036 422 272 70 12 chr6 59125965 59126136 -90390901 + L1M2 LINE L1 2365 2545 -3598 2 1036 259 202 86 25 chr6 59126137 59126218 -90390819 + L1M2 LINE L1 2688 2773 -3367 2 1036 1734 248 107 36 chr6 59126468 59127109 -90389928 + Lx7 LINE L1 5050 5724 -156 2 1036 1897 123 95 3 chr6 59127109 59127436 -90389601 - RLTR15 LTR ERVK 0 359 3 2 1036 1734 248 97 36 chr6 59127436 59127654 -90389383 + Lx7 LINE L1 5725 5968 -1676 2 1036 2668 305 43 19 chr6 59127766 59128874 -90388163 + Lx8 LINE L1 6176 7310 -163 2 1036 483 63 0 0 chr6 59128892 59128955 -90388082 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1036 447 188 26 0 chr6 59129098 59129215 -90387822 + CT-rich Low_complexity Low_complexity 1 120 0 2 1036 684 289 94 30 chr6 59129321 59129556 -90387481 + MLT1F2 LTR MaLR 309 558 -2 2 1036 549 171 300 35 chr6 59130714 59130884 -90386153 - B3 SINE B2 0 216 2 2 1036 762 181 7 46 chr6 59131775 59131926 -90385111 + B1_Mus2 SINE Alu 3 147 0 2 1036 884 284 46 43 chr6 59132296 59132598 -90384439 - MER2 DNA MER2_type -41 304 2 2 1036 1225 41 0 0 chr6 59132631 59132778 -90384259 + B1_Mus2 SINE Alu 1 147 0 2 1036 226 188 47 12 chr6 59132794 59132880 -90384157 + (TATAA)n Simple_repeat Simple_repeat 4 92 0 2 1036 1208 296 77 8 chr6 59133145 59133680 -90383357 - Lx9 LINE L1 -6 7638 7067 2 1036 249 139 0 0 chr6 59133942 59133985 -90383052 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2 1036 381 319 80 0 chr6 59134034 59134147 -90382890 - B1F SINE Alu -27 122 1 2 1036 7625 26 4 3 chr6 59136923 59137869 -90379168 - L1Md_F2 LINE L1 -2 6580 5634 2 1036 189 139 0 0 chr6 59139284 59139327 -90377710 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1036 320 322 147 0 chr6 59140770 59140883 -90376154 + B3A SINE B2 2 131 -62 2 1036 263 245 108 0 chr6 59141446 59141548 -90375489 + L1M3 LINE L1 4916 5028 -1112 2 1036 639 125 0 0 chr6 59141553 59141657 -90375380 + (CA)n Simple_repeat Simple_repeat 1 104 0 2 1036 346 297 27 9 chr6 59141847 59141959 -90375078 + PB1D7 SINE Alu 1 114 -6 2 1036 283 244 126 42 chr6 59141985 59142170 -90374867 + L1M3 LINE L1 5262 5461 -830 2 1036 21 36 0 0 chr6 59142500 59142528 -90374509 + AT_rich Low_complexity Low_complexity 1 28 0 2 1036 225 0 0 0 chr6 59142866 59142891 -90374146 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1036 198 0 0 0 chr6 59143314 59143336 -90373701 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1036 216 250 20 20 chr6 59143661 59143710 -90373327 + ID4_ SINE ID 16 64 -19 2 1036 264 303 22 22 chr6 59143787 59143878 -90373159 + CT-rich Low_complexity Low_complexity 5 95 0 2 1036 672 175 9 0 chr6 59144413 59144527 -90372510 + B1F2 SINE Alu 23 137 -12 2 1036 816 40 0 0 chr6 59144527 59144627 -90372410 + (CAAAG)n Simple_repeat Simple_repeat 5 104 0 2 1036 333 0 0 0 chr6 59144744 59144781 -90372256 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1036 479 17 17 0 chr6 59144781 59144840 -90372197 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1036 1883 260 76 30 chr6 59144860 59145384 -90371653 - RLTR18 LTR ERVK -25 591 44 2 1036 30 69 0 0 chr6 59145561 59145619 -90371418 + AT_rich Low_complexity Low_complexity 1 58 0 2 1036 243 329 24 37 chr6 59146276 59146358 -90370679 + ID2 SINE ID 3 83 0 2 1036 269 344 53 11 chr6 59146387 59146481 -90370556 + B1F1 SINE Alu 1 98 -51 2 1036 575 124 0 9 chr6 59146516 59146630 -90370407 + (GA)n Simple_repeat Simple_repeat 1 113 0 2 1036 21 0 0 0 chr6 59146677 59146698 -90370339 + AT_rich Low_complexity Low_complexity 1 21 0 2 1036 395 331 40 7 chr6 59148597 59148746 -90368291 + Lx8 LINE L1 6590 6743 -730 2 1036 306 0 0 0 chr6 59148746 59148780 -90368257 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1036 467 303 54 126 chr6 59148780 59149003 -90368034 + MTE2b LTR MaLR 173 379 0 2 1036 32489 35 11 12 chr6 59149638 59155075 -90361962 + L1Md_Gf LINE L1 1 4988 -898 2 1036 228 183 46 77 chr6 59155075 59155140 -90361897 - RMER20A LTR ERVK -268 248 186 2 1036 32489 35 11 12 chr6 59155140 59155794 -90361243 + L1Md_Gf LINE L1 4989 5589 -297 2 1036 9038 5 0 0 chr6 59155794 59156790 -90360247 + L1Md_T LINE L1 5587 6582 0 2 1036 234 0 0 0 chr6 59158328 59158354 -90358683 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1036 415 361 47 59 chr6 59160585 59161315 -90355722 + Tigger10 DNA Tigger 571 1291 -552 2 1036 222 188 113 28 chr6 59162663 59162734 -90354303 + MIR SINE MIR 126 202 -60 2 1036 290 281 144 25 chr6 59163569 59163770 -90353267 - MER113A DNA MER1_type -66 248 24 2 1036 211 305 34 0 chr6 59164982 59165041 -90351996 + B4A SINE B4 88 148 -144 2 1036 439 252 19 0 chr6 59164990 59165093 -90351944 + PB1D10 SINE Alu 12 116 -1 2 1036 232 333 0 0 chr6 59165093 59165150 -90351887 + ID4_ SINE ID 3 59 -24 2 1036 239 255 0 0 chr6 59166118 59166165 -90350872 - ID SINE ID -154 70 24 2 1036 3759 112 54 43 chr6 59166363 59167007 -90350030 + Lx2 LINE L1 6347 6997 0 2 1036 760 324 151 43 chr6 59167217 59167827 -90349210 - MER21B LTR ERV1 -109 754 80 2 1036 233 358 43 62 chr6 59168469 59168630 -90348407 - MamGypLTR2c LTR Gypsy -34 1034 877 2 1036 201 211 0 0 chr6 59169189 59169241 -90347796 + CT-rich Low_complexity Low_complexity 3 54 0 2 1036 573 197 51 0 chr6 59169340 59169457 -90347580 + RSINE1 SINE B4 12 134 -31 2 1036 558 0 0 0 chr6 59169470 59169532 -90347505 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1036 1410 271 126 21 chr6 59170208 59170907 -90346130 + RMER1A Other Other 1 509 -557 2 1036 7365 247 60 30 chr6 59170904 59174263 -90342774 + Lx7 LINE L1 3831 7306 -390 2 1036 378 0 0 0 chr6 59174263 59174305 -90342732 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2 1036 5053 261 86 33 chr6 59174305 59174361 -90342676 + Lx7 LINE L1 7307 7364 -332 2 1036 192 97 0 0 chr6 59174366 59174397 -90342640 + (TTTTTA)n Simple_repeat Simple_repeat 6 36 0 2 1036 6282 105 77 5 chr6 59174405 59175687 -90341350 - L1_Mus4 LINE L1 -3 6633 5248 2 1036 693 0 0 0 chr6 59175687 59175764 -90341273 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 2 1036 4281 100 70 2 chr6 59175764 59175801 -90341236 - L1_Mus4 LINE L1 -636 5247 5199 2 1036 31545 39 0 2 chr6 59175795 59179673 -90337364 + L1Md_T LINE L1 1716 5586 -297 2 1036 8378 33 2 0 chr6 59179673 59180667 -90336370 + L1Md_T LINE L1 5587 6582 0 2 1036 6213 101 30 16 chr6 59180670 59182394 -90334643 - L1VL4 LINE L1 -1807 1752 8 2 1036 213 311 37 28 chr6 59183286 59183395 -90333642 - MIR3 SINE MIR -1 207 98 2 1036 2297 208 37 61 chr6 59183560 59184114 -90332923 + RMER15 LTR ERVL 1 541 -34 2 1036 431 35 18 0 chr6 59184114 59184171 -90332866 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1036 2297 208 37 61 chr6 59184171 59184205 -90332832 + RMER15 LTR ERVL 542 575 0 2 1036 614 266 88 25 chr6 59184752 59185026 -90332011 + L1MA7 LINE L1 6001 6291 0 2 1036 452 275 151 7 chr6 59185832 59185971 -90331066 - RSINE1 SINE B4 -4 161 3 2 1036 11844 113 20 12 chr6 59186595 59189528 -90327509 + Lx3B LINE L1 4015 6950 -23 2 1036 752 272 102 13 chr6 59189751 59189986 -90327051 - MTE2b LTR MaLR -4 375 120 2 1036 1522 244 92 30 chr6 59189987 59190388 -90326649 - Lx9 LINE L1 -366 7278 6853 2 1036 3523 64 0 0 chr6 59190427 59190867 -90326170 + L1Md_F2 LINE L1 5925 6364 -218 2 1036 2288 91 190 27 chr6 59190869 59191274 -90325763 + IAPLTR2_Mm LTR ERVK 5 475 0 2 1036 2545 20 0 3 chr6 59191278 59191575 -90325462 - RLTR10-int LTR ERVK -1390 597 302 2 1036 2275 75 119 11 chr6 59191575 59191927 -90325110 - RLTR10 LTR ERVK 0 390 1 2 1036 1577 78 0 14 chr6 59191927 59192149 -90324888 + L1Md_F2 LINE L1 6358 6576 -6 2 1036 330 98 20 0 chr6 59192194 59192245 -90324792 - L1_Mus1 LINE L1 -1235 4648 4597 2 1036 7905 82 47 0 chr6 59192243 59194027 -90323010 + L1_Mus1 LINE L1 4668 6566 -1 2 1036 1457 282 60 27 chr6 59194070 59194999 -90322038 + Lx9 LINE L1 5510 6512 -961 2 1036 301 368 9 0 chr6 59195065 59195179 -90321858 - Arthur1B DNA Tip100 -1030 195 81 2 1036 17985 82 32 6 chr6 59195312 59196550 -90320487 - L1VL4 LINE L1 -3 3556 2259 2 1036 2623 65 14 23 chr6 59196550 59196899 -90320138 - ORR1A1 LTR MaLR 0 346 1 2 1036 17985 94 33 5 chr6 59196899 59198928 -90318109 - L1VL4 LINE L1 -1301 2258 195 2 1036 229 294 0 32 chr6 59198992 59199087 -90317950 + GA-rich Low_complexity Low_complexity 1 92 0 2 1036 293 347 24 8 chr6 59199410 59199535 -90317502 + Charlie4a DNA MER1_type 11 137 -371 2 1036 495 237 0 0 chr6 59200131 59200266 -90316771 + A-rich Low_complexity Low_complexity 1 135 0 2 1036 237 211 102 34 chr6 59200411 59200529 -90316508 - Lx9 LINE L1 -5 7639 7514 2 1036 441 0 0 0 chr6 59200532 59200581 -90316456 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1036 1984 312 86 49 chr6 59200582 59201090 -90315947 - Lx9 LINE L1 -230 7414 6895 2 1036 691 221 36 7 chr6 59201090 59201227 -90315810 + B1_Mur2 SINE Alu 2 142 -7 2 1036 1984 312 86 49 chr6 59201227 59201695 -90315342 - Lx9 LINE L1 -750 6894 6402 2 1036 1286 68 0 0 chr6 59201701 59201864 -90315173 - B2_Mm2 SINE B2 -31 164 2 2 1036 731 32 0 11 chr6 59201922 59202017 -90315020 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 2 1036 228 225 44 18 chr6 59202020 59202133 -90314904 + (TA)n Simple_repeat Simple_repeat 2 117 0 2 1036 213 152 0 0 chr6 59202176 59202212 -90314825 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1036 387 0 0 0 chr6 59202212 59202255 -90314782 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1036 213 152 0 0 chr6 59202255 59202264 -90314773 + (TA)n Simple_repeat Simple_repeat 1 9 0 2 1036 591 229 8 8 chr6 59202301 59202424 -90314613 - Lx9 LINE L1 -405 7239 7117 2 1036 3120 255 87 60 chr6 59202450 59203968 -90313069 - Lx9 LINE L1 -1301 6172 4582 2 1036 339 25 0 0 chr6 59204050 59204090 -90312947 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1036 1968 253 89 27 chr6 59204094 59204686 -90312351 - Lx9 LINE L1 -3769 2078 1430 2 1036 754 69 23 8 chr6 59204686 59204818 -90312219 - L1_Mus3 LINE L1 0 6638 6505 2 1036 1968 253 89 27 chr6 59204818 59205030 -90312007 - Lx9 LINE L1 -4418 1429 1224 2 1036 427 272 58 0 chr6 59205090 59205281 -90311756 - Lx9 LINE L1 -6487 1121 920 2 1036 282 206 0 0 chr6 59205361 59205424 -90311613 + CT-rich Low_complexity Low_complexity 2 64 0 3 1036 596 14 0 14 chr6 59205880 59205954 -90311083 + (TTCC)n Simple_repeat Simple_repeat 2 74 0 3 1036 410 53 18 0 chr6 59207380 59207437 -90309600 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1036 214 200 18 35 chr6 59207562 59207619 -90309418 + GA-rich Low_complexity Low_complexity 5 60 0 3 1036 250 390 0 48 chr6 59208190 59208314 -90308723 + MLT1B LTR MaLR 202 319 -71 3 1036 311 280 87 24 chr6 59208444 59208610 -90308427 - MIR SINE MIR -73 195 1 3 1036 21 0 0 0 chr6 59209027 59209048 -90307989 + AT_rich Low_complexity Low_complexity 1 21 0 3 1036 269 299 111 17 chr6 59209049 59209189 -90307848 + B4A SINE B4 1 163 -2 3 1036 2454 145 42 24 chr6 59209484 59209936 -90307101 + RMER6B LTR ERVK 1 460 -1 3 1036 259 286 28 14 chr6 59213563 59213634 -90303403 - ID4_ SINE ID -3 80 9 3 1036 272 18 89 18 chr6 59213643 59213699 -90303338 + (TTTTG)n Simple_repeat Simple_repeat 3 62 0 3 1036 6387 45 10 0 chr6 59213728 59214512 -90302525 - L1Md_F2 LINE L1 0 6582 5791 3 1036 2410 46 0 0 chr6 59214512 59214815 -90302222 + L1_Mm LINE L1 3949 4251 -1632 3 1036 664 304 161 50 chr6 59215251 59215611 -90301426 - MTD LTR MaLR 0 419 20 3 1036 200 292 0 0 chr6 59215774 59215822 -90301215 + GA-rich Low_complexity Low_complexity 3 50 0 3 1036 595 84 21 0 chr6 59216568 59216663 -90300374 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 3 1036 309 212 216 24 chr6 59216712 59216862 -90300175 - L1M4 LINE L1 -760 5414 5237 3 1036 587 294 85 11 chr6 59216945 59217134 -90299903 + B3 SINE B2 1 203 -13 3 1036 3131 44 10 5 chr6 59217135 59217527 -90299510 - MTA_Mm LTR MaLR 0 396 3 3 1036 317 59 14 56 chr6 59218934 59219006 -90298031 + (TTTTTG)n Simple_repeat Simple_repeat 2 70 0 3 1036 203 356 27 0 chr6 59219709 59219782 -90297255 + MIR3 SINE MIR 99 173 -35 3 1036 976 134 6 17 chr6 59219809 59219984 -90297053 - L1_Mur2 LINE L1 -502 5375 5203 3 1036 2819 154 83 6 chr6 59219985 59220502 -90296535 + Lx2B LINE L1 6438 6994 -6 3 1036 381 107 36 0 chr6 59222803 59222887 -90294150 - L1_Mus3 LINE L1 -1 6637 6551 3 1036 28 0 0 0 chr6 59223383 59223411 -90293626 + AT_rich Low_complexity Low_complexity 1 28 0 3 1036 21 57 0 0 chr6 59223505 59223540 -90293497 + AT_rich Low_complexity Low_complexity 1 35 0 3 1036 672 191 87 14 chr6 59223551 59223689 -90293348 - B1_Mus1 SINE Alu 0 148 1 3 1036 3315 43 2 2 chr6 59223752 59224148 -90292889 + MTA_Mm LTR MaLR 1 396 0 3 1036 367 345 121 5 chr6 59224606 59224813 -90292224 + MIRb SINE MIR 34 264 -4 3 1036 1069 73 47 0 chr6 59225263 59225413 -90291624 + L1Md_F2 LINE L1 5430 5586 -297 3 1036 7381 56 43 1 chr6 59225414 59226367 -90290670 + L1Md_F2 LINE L1 5588 6580 -2 3 1036 403 284 96 9 chr6 59226975 59227223 -90289814 + L1MA4 LINE L1 5662 5926 -371 3 1036 237 119 0 0 chr6 59227239 59227281 -90289756 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1036 1694 177 110 0 chr6 59227281 59227591 -90289446 + ORR1B2 LTR MaLR 13 356 -11 3 1036 1224 203 31 31 chr6 59227597 59227851 -90289186 + ORR1B2-int LTR MaLR 1 254 -1255 3 1036 232 246 29 14 chr6 59227956 59228026 -90289011 - LTRIS5 LTR ERV1 -144 303 233 3 1036 702 194 79 0 chr6 59228329 59228468 -90288569 + ORR1B2-int LTR MaLR 236 385 -1124 3 1036 1271 203 41 8 chr6 59228516 59228784 -90288253 + ORR1B2 LTR MaLR 83 359 -8 3 1036 366 23 0 0 chr6 59228797 59228840 -90288197 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1036 3866 138 67 2 chr6 59228881 59229519 -90287518 + Lx4A LINE L1 6376 7055 -3 3 1036 180 152 0 0 chr6 59229519 59229552 -90287485 + (TAA)n Simple_repeat Simple_repeat 1 33 0 3 1036 185 180 20 0 chr6 59230111 59230161 -90286876 + (TTG)n Simple_repeat Simple_repeat 1 51 0 3 1036 284 338 82 33 chr6 59231125 59231611 -90285426 + L1M2 LINE L1 1955 2464 -4385 3 1036 1090 176 12 65 chr6 59232172 59232509 -90284528 - MTB_Mm LTR MaLR -7 400 1 3 1036 881 306 56 16 chr6 59232511 59232817 -90284220 - MTE2b LTR MaLR -43 336 19 3 1036 2464 296 47 12 chr6 59232833 59233509 -90283528 - MTE2b-int LTR MaLR -2 1578 879 3 1036 495 45 0 0 chr6 59233521 59233588 -90283449 - L1Md_T LINE L1 0 6585 6519 3 1036 16575 7 1 2 chr6 59233588 59235535 -90281502 + L1_Mm LINE L1 3640 5586 -297 3 1036 9006 4 0 0 chr6 59235535 59236529 -90280508 + L1Md_A LINE L1 5587 6580 -2 3 1036 16575 7 1 2 chr6 59236529 59236553 -90280484 + L1_Mm LINE L1 5587 5608 -275 3 1036 25 51 0 0 chr6 59236555 59236594 -90280443 + AT_rich Low_complexity Low_complexity 1 39 0 3 1036 36410 42 0 4 chr6 59236594 59242766 -90274271 - L1Md_T LINE L1 -56 6529 288 3 1036 1820 315 61 54 chr6 59242802 59243103 -90273934 - MTE2b-int LTR MaLR -696 884 579 3 1036 1018 101 29 0 chr6 59243103 59243241 -90273796 - B1_Mus1 SINE Alu -5 143 2 3 1036 1820 315 61 54 chr6 59243241 59243641 -90273396 - MTE2b-int LTR MaLR -1002 578 178 3 1036 414 271 21 86 chr6 59243660 59243997 -90273040 + L1_Rod LINE L1 5227 5512 -368 3 1036 930 309 25 91 chr6 59243992 59244519 -90272518 + Lx8 LINE L1 6751 7242 -231 3 129 322 232 124 0 chr6 59244541 59244635 -90272402 - MTE2b LTR MaLR -155 224 118 3 1037 280 146 73 0 chr6 59244636 59244718 -90272319 + L1_Mur3 LINE L1 3180 3267 -2613 3 1037 446 202 193 0 chr6 59244722 59244831 -90272206 - B2_Mm2 SINE B2 -25 170 41 3 1037 3746 230 116 12 chr6 59244845 59246316 -90270721 - L1_Mur3 LINE L1 -3001 2879 1257 3 1037 1099 79 0 0 chr6 59246357 59246497 -90270540 - B1_Mus2 SINE Alu -6 141 2 3 1037 21 36 0 0 chr6 59246507 59246535 -90270502 + AT_rich Low_complexity Low_complexity 1 28 0 3 1037 542 252 47 0 chr6 59247321 59247448 -90269589 + ETnERV2-int LTR ERVK 7070 7202 -204 3 1037 643 42 0 10 chr6 59247657 59247754 -90269283 - L1Md_F2 LINE L1 -12 6570 6475 3 1037 322 351 380 20 chr6 59247931 59248139 -90268898 + B4A SINE B4 10 292 0 3 1037 320 308 108 14 chr6 59248570 59248718 -90268319 + MLT1A LTR MaLR 109 270 -104 3 1037 7366 31 7 0 chr6 59248730 59249788 -90267249 - L1Md_F2 LINE L1 -563 6019 4955 3 1037 4622 46 0 5 chr6 59249788 59250360 -90266677 + L1Md_F2 LINE L1 6002 6570 -12 3 1037 864 254 104 0 chr6 59250702 59250981 -90266056 - Lx8 LINE L1 -413 7060 6753 3 1037 333 0 0 0 chr6 59251044 59251081 -90265956 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1037 180 0 0 0 chr6 59251081 59251100 -90265937 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1037 413 292 22 14 chr6 59251100 59251239 -90265798 - L1M2 LINE L1 -659 5641 5502 3 1037 1929 169 47 3 chr6 59251266 59251628 -90265409 - ORR1C1 LTR MaLR 0 378 1 3 1037 230 296 100 20 chr6 59251654 59251754 -90265283 + MTE2a LTR MaLR 159 266 -113 3 1037 351 0 0 0 chr6 59252384 59252423 -90264614 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1037 881 227 92 0 chr6 59252559 59252766 -90264271 - URR1A DNA MER1_type 0 226 1 3 1037 523 268 93 48 chr6 59252766 59253056 -90263981 - L1MB2 LINE L1 -241 5930 5628 3 1037 226 319 82 49 chr6 59253195 59253317 -90263720 + L2a LINE L2 3300 3425 -1 3 1037 24 0 0 0 chr6 59253929 59253953 -90263084 + AT_rich Low_complexity Low_complexity 1 24 0 3 1037 204 125 0 0 chr6 59254030 59254062 -90262975 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 1037 180 0 0 0 chr6 59254085 59254105 -90262932 + (TCTCC)n Simple_repeat Simple_repeat 2 21 0 3 1037 2669 94 5 5 chr6 59254139 59254522 -90262515 - RLTR9D LTR ERVK -20 383 1 3 1037 6268 183 82 13 chr6 59254523 59254536 -90262501 - Lx5 LINE L1 -75 6975 6969 3 1037 5757 111 52 45 chr6 59254536 59254825 -90262212 + RMER17B LTR ERVK 1 314 -644 3 1037 771 32 0 0 chr6 59254825 59254919 -90262118 + (TC)n Simple_repeat Simple_repeat 2 95 0 3 1037 5757 111 52 45 chr6 59254919 59255581 -90261456 + RMER17B LTR ERVK 315 957 -1 3 1037 6268 179 65 24 chr6 59255581 59257354 -90259683 - Lx5 LINE L1 -82 6968 5107 3 1037 1371 85 5 5 chr6 59257354 59257544 -90259493 - B2_Mm2 SINE B2 -5 190 1 3 1037 5852 172 42 38 chr6 59257544 59258116 -90258921 - Lx5 LINE L1 -771 5106 4556 3 1037 462 49 0 0 chr6 59258897 59258958 -90258079 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1037 233 98 24 0 chr6 59259425 59259466 -90257571 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 3 1037 353 293 34 17 chr6 59260283 59260401 -90256636 + LTR82B Low_complexity ERVL 522 641 -189 3 1037 236 317 12 24 chr6 59260466 59260550 -90256487 + MLT1H LTR MaLR 60 142 -407 3 1037 332 303 102 34 chr6 59260881 59261028 -90256009 + LTR82A LTR ERVL 689 845 -27 3 1037 231 304 38 0 chr6 59261912 59261991 -90255046 + MER5B DNA MER1_type 43 124 -54 3 1037 235 366 42 77 chr6 59262025 59262312 -90254725 + L2c LINE L2 3111 3387 0 3 1037 267 122 0 0 chr6 59262625 59262674 -90254363 + (TGG)n Simple_repeat Simple_repeat 2 50 0 3 1037 197 271 0 59 chr6 59262736 59262787 -90254250 + L3 LINE CR1 3990 4037 -452 3 1037 1100 243 19 34 chr6 59262869 59262989 -90254048 + ORR1D2 LTR MaLR 1 121 -249 3 1037 288 0 0 0 chr6 59262989 59263021 -90254016 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1037 1100 243 19 34 chr6 59263021 59263164 -90253873 + ORR1D2 LTR MaLR 122 260 -110 3 1037 459 265 62 93 chr6 59263321 59263546 -90253491 + RLTR14 LTR ERV1 165 382 0 3 1037 289 125 0 0 chr6 59263592 59263632 -90253405 + ORR1D2 LTR MaLR 320 359 -11 3 1037 190 264 198 52 chr6 59263859 59263955 -90253082 - MIRc SINE MIR -112 156 47 3 1037 501 355 97 25 chr6 59264307 59264700 -90252337 + MER34A1 LTR ERV1 98 518 -69 3 1037 245 271 7 83 chr6 59264743 59264888 -90252149 - L1MD3 LINE L1 -68 7927 7794 3 1037 355 247 181 11 chr6 59265676 59265864 -90251173 - L1MA9 LINE L1 -172 6140 5921 3 1037 1658 221 73 0 chr6 59266296 59266487 -90250550 - ORR1D1 LTR MaLR 0 374 175 3 1037 945 18 0 0 chr6 59266487 59266598 -90250439 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 3 1037 1658 221 73 0 chr6 59266598 59266750 -90250287 - ORR1D1 LTR MaLR -200 174 7 3 1037 260 302 136 23 chr6 59266761 59267025 -90250012 - L1MB7 LINE L1 -3 6181 5888 3 1037 6142 212 58 11 chr6 59267278 59268671 -90248366 + ORR1C1-int LTR MaLR 51 1509 0 3 1037 1963 169 26 54 chr6 59268671 59269060 -90247977 + ORR1C1 LTR MaLR 1 378 0 3 1037 245 293 132 22 chr6 59269112 59269339 -90247698 - L1MB7 LINE L1 -627 5551 5300 3 1037 3949 38 2 0 chr6 59269716 59270314 -90246723 - L1Md_F3 LINE L1 -611 5973 5375 3 1037 4666 52 17 0 chr6 59270314 59270889 -90246148 + L1Md_F3 LINE L1 5986 6570 -14 3 1037 315 282 36 18 chr6 59271086 59271198 -90245839 - Tigger15a DNA TcMar -503 212 99 3 1037 24 0 0 0 chr6 59271368 59271392 -90245645 + AT_rich Low_complexity Low_complexity 1 24 0 3 1037 1086 264 38 67 chr6 59271662 59271756 -90245281 + Lx9 LINE L1 6805 6895 -749 4 1037 1208 87 10 70 chr6 59271756 59271955 -90245082 - B2_Mm1t SINE B2 -6 187 1 4 1037 1086 264 38 67 chr6 59271955 59272306 -90244731 + Lx9 LINE L1 6896 7237 -407 4 1037 253 290 85 27 chr6 59272427 59272550 -90244487 - RMER17D LTR ERVK -481 408 283 4 1037 600 50 0 0 chr6 59272550 59272630 -90244407 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1037 253 290 85 27 chr6 59272630 59272694 -90244343 - RMER17D LTR ERVK -607 282 210 4 1037 2276 187 86 44 chr6 59272723 59273317 -90243720 - RMER17C-int LTR ERVK -21 3217 2599 4 1037 339 291 0 9 chr6 59273401 59273512 -90243525 - RMER17C-int LTR ERVK -1992 1246 1137 4 1037 646 251 92 99 chr6 59274560 59274972 -90242065 - RodERV21-int LTR ERV1 -4230 761 353 4 1037 316 290 20 46 chr6 59275295 59275447 -90241590 + GA-rich Low_complexity Low_complexity 4 151 0 4 1037 231 203 13 51 chr6 59275508 59275586 -90241451 + Lx9 LINE L1 7569 7643 -1 4 1037 1887 136 49 7 chr6 59275990 59276294 -90240743 - ORR1A4 LTR MaLR -8 321 5 4 1037 3232 151 41 89 chr6 59276290 59277186 -90239851 - ORR1A4-int LTR MaLR -193 1770 1001 4 1037 238 171 0 0 chr6 59277186 59277227 -90239810 + RLTR26 LTR ERVK 1 41 -601 4 1037 413 83 9 0 chr6 59277480 59277545 -90239492 - ORR1A4-int LTR MaLR -1744 219 151 4 1037 324 297 78 84 chr6 59277938 59278129 -90238908 - B3A SINE B2 -4 194 5 4 1037 283 268 10 30 chr6 59279017 59279117 -90237920 - L1MA6 LINE L1 -101 6199 6102 4 1037 659 196 0 9 chr6 59279208 59279321 -90237716 + B3 SINE B2 1 112 -104 4 1037 450 0 0 0 chr6 59279814 59279864 -90237173 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1037 607 207 18 0 chr6 59279925 59280036 -90237001 + B3 SINE B2 91 203 -13 4 1037 2231 151 60 28 chr6 59280380 59280817 -90236220 + RLTR11B LTR ERVK 2 452 -1 4 1037 21 0 0 0 chr6 59280965 59280986 -90236051 + AT_rich Low_complexity Low_complexity 1 21 0 4 1037 5951 8 0 0 chr6 59281065 59281795 -90235242 - L1Md_T LINE L1 0 6582 5924 4 1037 1893 133 50 154 chr6 59281911 59282011 -90235026 + RLTR23 LTR ERV1 1 100 -330 4 1037 285 29 0 0 chr6 59282011 59282045 -90234992 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1037 1893 133 50 154 chr6 59282045 59282424 -90234613 + RLTR23 LTR ERV1 101 430 0 4 1037 2054 306 28 21 chr6 59282491 59283219 -90233818 - Lx7 LINE L1 -335 7361 6629 4 1037 707 235 162 31 chr6 59283243 59283527 -90233510 - RMER20B LTR ERVK -286 341 21 4 1037 180 0 0 0 chr6 59283951 59283971 -90233066 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1037 600 323 7 7 chr6 59284683 59284845 -90232192 + B3A SINE B2 2 162 -54 4 1037 486 0 0 0 chr6 59284845 59284899 -90232138 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1037 518 330 16 26 chr6 59284899 59284929 -90232108 + B3 SINE B2 163 191 -25 4 1037 21 36 0 0 chr6 59285056 59285084 -90231953 + AT_rich Low_complexity Low_complexity 1 28 0 4 1037 2015 159 74 8 chr6 59285362 59285729 -90231308 - RLTR9D LTR ERVK -12 391 1 4 1037 974 121 28 0 chr6 59286034 59286175 -90230862 + B1_Mm SINE Alu 2 146 -1 4 1037 22 35 0 0 chr6 59286267 59286296 -90230741 + AT_rich Low_complexity Low_complexity 1 29 0 4 1037 733 152 316 0 chr6 59286885 59287056 -90229981 - URR1A DNA MER1_type -1 225 1 4 1037 847 239 6 38 chr6 59287411 59287594 -90229443 - RLTR25B LTR ERVK -851 177 1 4 1037 300 351 112 80 chr6 59287969 59288036 -90229001 - MLT1E1A LTR MaLR 0 680 616 4 1037 634 292 49 120 chr6 59288036 59288444 -90228593 - MTE2a LTR MaLR 0 379 1 4 1037 300 351 112 80 chr6 59288444 59288874 -90228163 - MLT1E1A LTR MaLR -65 615 167 4 1037 758 136 8 0 chr6 59291116 59291234 -90225803 - ORR1A2 LTR MaLR -208 119 1 4 1037 9943 153 59 10 chr6 59291234 59293106 -90223931 - ORR1A2-int LTR MaLR 0 1963 1 4 1037 2254 79 3 70 chr6 59293110 59293452 -90223585 - ORR1A2 LTR MaLR -8 319 1 4 1037 604 198 0 18 chr6 59295079 59295192 -90221845 - B3 SINE B2 -105 111 1 4 1037 227 131 31 62 chr6 59297195 59297260 -90219777 + A-rich Low_complexity Low_complexity 1 63 0 4 1037 336 185 0 15 chr6 59300059 59300125 -90216912 - RMER1A Other Other -425 605 541 4 1037 2280 158 38 7 chr6 59300124 59300545 -90216492 + RMER1A Other Other 596 1029 -1 4 1037 227 361 99 16 chr6 59305511 59305632 -90211405 + B1F2 SINE Alu 10 140 -9 4 1037 313 200 28 28 chr6 59305649 59305721 -90211316 + ID4 SINE ID 9 80 -3 4 1037 273 233 64 85 chr6 59305721 59305743 -90211294 + ID_B1 SINE B4 9 100 -124 4 1037 21 0 0 0 chr6 59306494 59306515 -90210522 + AT_rich Low_complexity Low_complexity 1 21 0 4 1037 369 210 71 63 chr6 59307622 59307749 -90209288 - RLTR11B LTR ERVK -191 262 135 4 1037 1355 131 54 0 chr6 59307758 59307980 -90209057 + Lx LINE L1 6245 6478 -176 4 1037 251 303 79 0 chr6 59309428 59309504 -90207533 + PB1D10 SINE Alu 30 111 -6 4 1037 259 266 12 37 chr6 59309572 59309654 -90207383 + CT-rich Low_complexity Low_complexity 1 80 0 4 1037 4455 31 0 0 chr6 59309718 59310234 -90206803 + L1Md_T LINE L1 6066 6581 -1 4 1037 549 74 36 36 chr6 59310668 59310780 -90206257 - L1Md_F2 LINE L1 0 6582 6471 4 1037 611 277 81 14 chr6 59310943 59311166 -90205871 - Lx9 LINE L1 -1045 6599 6362 4 1037 336 64 0 0 chr6 59311174 59311221 -90205816 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1037 1555 37 11 5 chr6 59311448 59311637 -90205400 + B2_Mm1t SINE B2 1 190 -3 4 1037 265 305 57 48 chr6 59312110 59312234 -90204803 - MER31B LTR ERV1 -146 320 196 4 1037 1049 148 33 5 chr6 59312536 59312720 -90204317 + URR1A DNA MER1_type 38 226 0 4 1037 233 247 0 30 chr6 59312858 59312958 -90204079 + (CAAA)n Simple_repeat Simple_repeat 2 98 0 4 1037 967 263 169 14 chr6 59314182 59314595 -90202442 + RMER5 LTR ERV1 49 525 -9 4 1037 817 300 58 10 chr6 59315339 59315632 -90201405 + RMER5 LTR ERV1 228 534 0 4 1037 248 301 95 26 chr6 59315988 59316104 -90200933 - Charlie4z DNA MER1_type -7 160 37 4 1037 649 241 0 50 chr6 59316246 59316386 -90200651 + RSINE1 SINE B4 3 135 -30 4 1037 1120 135 22 0 chr6 59318081 59318266 -90198771 + Lx2A LINE L1 5624 5812 -1196 4 1037 4997 132 32 78 chr6 59318266 59318542 -90198495 + Lx2A LINE L1 6109 6382 -626 4 1037 377 20 0 20 chr6 59318542 59318593 -90198444 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 4 1037 4997 132 32 78 chr6 59318593 59319260 -90197777 + Lx2A LINE L1 6383 7007 -1 4 1037 278 206 0 14 chr6 59319382 59319451 -90197586 + GA-rich Low_complexity Low_complexity 5 72 0 4 1037 183 42 0 0 chr6 59319963 59319987 -90197050 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1037 262 296 154 10 chr6 59321412 59321620 -90195417 + Tigger13a DNA MER2_type 164 401 -370 4 1037 302 305 116 41 chr6 59321718 59321865 -90195172 - RSINE1 SINE B4 -1 164 7 4 1037 326 323 60 36 chr6 59322254 59322421 -90194616 - MIR SINE MIR -18 244 74 4 1037 258 258 14 43 chr6 59322935 59323004 -90194033 - ORR1E LTR MaLR -283 76 10 4 1037 344 241 60 0 chr6 59323052 59323135 -90193902 + B1F1 SINE Alu 9 96 -53 4 1037 279 0 0 0 chr6 59323146 59323177 -90193860 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1037 261 57 0 0 chr6 59323345 59323380 -90193657 + (CCAA)n Simple_repeat Simple_repeat 1 35 0 4 1037 455 335 138 13 chr6 59323421 59323632 -90193405 + MLT1A0 LTR MaLR 10 248 -117 4 1037 1457 169 82 67 chr6 59323632 59323948 -90193089 + ORR1A4 LTR MaLR 1 321 -8 4 1037 2671 235 77 47 chr6 59324238 59324717 -90192320 - RCHARR1 DNA MER1_type -6 968 480 4 1037 954 211 13 53 chr6 59324717 59324942 -90192095 - B3 SINE B2 0 216 1 4 1037 2671 235 77 47 chr6 59324942 59325297 -90191740 - RCHARR1 DNA MER1_type -495 479 109 4 1037 263 206 15 0 chr6 59325689 59325757 -90191280 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 1037 1084 182 70 3 chr6 59325812 59326033 -90191004 + MTC LTR MaLR 1 210 -211 4 1037 235 254 0 53 chr6 59326042 59326117 -90190920 + L1_Mur1 LINE L1 681 751 -6231 4 1037 936 240 16 4 chr6 59326246 59326489 -90190548 + L1_Mur1 LINE L1 765 1010 -5972 4 1037 4144 205 76 16 chr6 59326877 59327673 -90189364 + RMER1B Other Other 13 852 -214 4 1037 3021 33 3 6 chr6 59327673 59328039 -90188998 + L1Md_A LINE L1 6217 6581 -1 4 1037 4144 205 76 16 chr6 59328039 59328225 -90188812 + RMER1B Other Other 853 1053 -13 4 1037 383 333 180 35 chr6 59328406 59328717 -90188320 + MLT1F1 LTR MaLR 36 391 -178 4 1037 2559 52 0 6 chr6 59328747 59329073 -90187964 - L1_Mus1 LINE L1 0 6567 6244 4 1037 3120 60 0 0 chr6 59329074 59329475 -90187562 + L1_Mus1 LINE L1 5840 6240 -327 4 1037 6145 53 1 0 chr6 59329822 59330577 -90186460 + L1Md_F2 LINE L1 5820 6575 -7 4 1037 881 254 54 52 chr6 59330616 59331077 -90185960 + L1M3 LINE L1 4216 4677 -1463 4 1037 245 191 2 7 chr6 59331079 59331140 -90185897 + L1_Rod LINE L1 5165 5254 -626 4 1037 387 0 0 0 chr6 59331140 59331183 -90185854 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1037 232 236 20 61 chr6 59331183 59331220 -90185817 + L1_Rod LINE L1 5255 5290 -590 4 1037 1404 251 61 15 chr6 59331947 59332290 -90184747 - ORR1E LTR MaLR 0 359 1 4 1037 610 82 20 0 chr6 59334223 59334321 -90182716 + (TC)n Simple_repeat Simple_repeat 2 101 0 4 1037 3156 56 15 0 chr6 59335176 59335570 -90181467 + MTB LTR MaLR 1 400 0 4 1037 21 57 0 0 chr6 59335763 59335798 -90181239 + AT_rich Low_complexity Low_complexity 1 35 0 4 1037 23 0 0 0 chr6 59335822 59335845 -90181192 + AT_rich Low_complexity Low_complexity 1 23 0 4 1037 210 91 0 0 chr6 59336414 59336447 -90180590 + (CAAAC)n Simple_repeat Simple_repeat 1 33 0 4 1037 606 68 0 0 chr6 59336447 59336535 -90180502 + (CCA)n Simple_repeat Simple_repeat 1 88 0 4 1037 1221 236 151 0 chr6 59337039 59337403 -90179634 + MTD LTR MaLR 1 419 0 4 1037 27 81 0 0 chr6 59338240 59338302 -90178735 + AT_rich Low_complexity Low_complexity 1 62 0 4 1037 180 304 50 71 chr6 59339746 59339845 -90177192 - MIRm SINE MIR -19 257 161 4 1037 252 310 109 66 chr6 59340640 59340823 -90176214 - L2b LINE L2 -160 3215 3025 4 1037 264 271 86 79 chr6 59340934 59341074 -90175963 + MIR SINE MIR 38 178 -84 4 1037 2864 85 31 0 chr6 59341296 59341684 -90175353 + MTB LTR MaLR 1 400 0 4 1037 294 331 29 24 chr6 59342041 59342211 -90174826 - Lx9 LINE L1 -1670 5974 5804 4 1037 1430 285 32 74 chr6 59342217 59343108 -90173929 - L1_Mur3 LINE L1 -346 5534 4681 4 1037 1441 306 103 39 chr6 59343195 59343550 -90173487 + Lx8 LINE L1 6198 6578 -895 4 1037 1441 196 128 12 chr6 59343550 59343885 -90173152 - ORR1D1 LTR MaLR 0 374 1 4 1037 1441 306 103 39 chr6 59343885 59344331 -90172706 + Lx8 LINE L1 6579 7051 -422 4 1037 570 275 122 16 chr6 59344360 59344615 -90172422 + L1_Rod LINE L1 3979 4260 -1587 4 1037 1134 251 166 22 chr6 59344605 59345176 -90171861 + L1_Rod LINE L1 4636 5344 -836 4 1037 8223 263 25 57 chr6 59345237 59345950 -90171087 + Lx7 LINE L1 859 1561 -4319 4 1037 890 196 21 11 chr6 59345950 59346141 -90170896 + B2_Mm2 SINE B2 1 193 -2 5 1037 8223 263 45 81 chr6 59346141 59349259 -90167778 + Lx7 LINE L1 1562 4529 -1351 4 1037 6176 35 25 0 chr6 59349259 59349994 -90167043 - L1Md_F2 LINE L1 -12 6570 5818 5 1037 8223 273 69 69 chr6 59349994 59352008 -90165029 + Lx7 LINE L1 4530 6536 -1160 4 1037 252 0 0 0 chr6 59352008 59352036 -90165001 + (TTA)n Simple_repeat Simple_repeat 3 30 0 5 1037 3230 291 118 44 chr6 59352036 59352748 -90164289 + Lx7 LINE L1 6537 7366 -330 4 1037 224 30 0 29 chr6 59352766 59352800 -90164237 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 5 1037 2329 306 80 26 chr6 59352903 59354776 -90162261 + Lx9 LINE L1 5277 7437 -207 5 1037 422 323 44 22 chr6 59354876 59355012 -90162025 + ID_B1 SINE B4 86 224 0 5 1037 504 0 0 0 chr6 59355236 59355292 -90161745 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1037 411 203 8 24 chr6 59356195 59356321 -90160716 + (TATG)n Simple_repeat Simple_repeat 2 125 0 5 1037 211 347 0 20 chr6 59356327 59356427 -90160610 + (TATATG)n Simple_repeat Simple_repeat 6 103 0 5 1037 364 322 65 51 chr6 59356429 59356645 -90160392 + RMER12 LTR ERVK 770 988 -334 5 1037 348 249 11 22 chr6 59356672 59356853 -90160184 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 5 1037 349 322 13 20 chr6 59356854 59357003 -90160034 + (TATG)n Simple_repeat Simple_repeat 4 151 0 5 1037 249 182 0 0 chr6 59357014 59357069 -90159968 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1037 916 280 28 24 chr6 59357073 59357362 -90159675 - B4A SINE B4 -1 291 2 5 1037 591 315 57 35 chr6 59360021 59360248 -90156789 + MER47B DNA MER2_type 37 268 -150 5 1037 222 37 0 0 chr6 59360373 59360400 -90156637 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1037 886 219 41 5 chr6 59361105 59361302 -90155735 + B3 SINE B2 7 210 -6 5 1037 641 304 111 12 chr6 59361434 59361687 -90155350 + B4A SINE B4 3 280 -12 5 1037 201 94 0 0 chr6 59361694 59361726 -90155311 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1037 216 0 0 0 chr6 59361791 59361815 -90155222 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1037 563 262 7 0 chr6 59361827 59361968 -90155069 + B1F SINE Alu 1 142 -7 5 1037 183 139 0 0 chr6 59361972 59362008 -90155029 + (CCAA)n Simple_repeat Simple_repeat 1 36 0 5 1037 1050 97 7 0 chr6 59362129 59362274 -90154763 + B1_Mus2 SINE Alu 1 146 -1 5 1037 972 157 24 82 chr6 59363317 59363525 -90153512 - URR1B DNA MER1_type 0 225 30 5 1037 1959 191 40 5 chr6 59363967 59364372 -90152665 - Lx LINE L1 -5 6649 6231 5 1037 707 194 21 37 chr6 59365588 59365775 -90151262 + Lx5 LINE L1 6856 7039 -11 5 1037 324 64 0 0 chr6 59365779 59365826 -90151211 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1037 705 299 80 0 chr6 59367641 59367842 -90149195 + ID_B1 SINE B4 8 224 0 5 1037 228 316 51 0 chr6 59370679 59370758 -90146279 + Charlie26a DNA MER1_type 29 111 -214 5 1037 216 135 0 0 chr6 59371287 59371324 -90145713 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 5 1037 348 284 0 0 chr6 59371616 59371683 -90145354 - RSINE1 SINE B4 -96 69 3 5 1037 22 35 0 0 chr6 59372095 59372124 -90144913 + AT_rich Low_complexity Low_complexity 1 29 0 5 1037 517 241 0 9 chr6 59373174 59373283 -90143754 + PB1D10 SINE Alu 1 108 -9 5 1037 1077 83 7 0 chr6 59373330 59373474 -90143563 + B1_Mus1 SINE Alu 2 146 -2 5 1037 302 0 26 0 chr6 59373474 59373512 -90143525 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1037 187 310 57 45 chr6 59374064 59374152 -90142885 + L2c LINE L2 3297 3385 -2 5 1037 23 0 0 0 chr6 59375157 59375180 -90141857 + AT_rich Low_complexity Low_complexity 1 23 0 5 1038 237 65 0 0 chr6 59377191 59377222 -90139815 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1038 231 291 99 25 chr6 59377825 59377906 -90139131 - MLT1D LTR MaLR -412 93 7 5 1038 1870 187 32 12 chr6 59378524 59378870 -90138167 - ORR1B2 LTR MaLR -14 353 1 5 1038 441 275 93 35 chr6 59378870 59379047 -90137990 + MTEb LTR MaLR 178 374 -5 5 1038 4297 167 81 36 chr6 59379236 59380104 -90136933 - RMER13B LTR ERVK 0 908 2 5 1038 432 272 66 44 chr6 59380420 59380601 -90136436 + RLTR12B LTR ERVK 46 230 -298 5 1038 713 12 12 0 chr6 59380601 59380687 -90136350 + (GA)n Simple_repeat Simple_repeat 2 88 0 5 1038 240 255 125 54 chr6 59380689 59380801 -90136236 + RLTR12B LTR ERVK 316 435 -93 5 1038 212 279 12 12 chr6 59380887 59380967 -90136070 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 5 1038 444 36 0 0 chr6 59381519 59381568 -90135469 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1038 653 12 25 0 chr6 59381568 59381649 -90135388 + (TCCCC)n Simple_repeat Simple_repeat 1 83 0 5 1038 444 36 0 0 chr6 59381649 59381655 -90135382 + (TC)n Simple_repeat Simple_repeat 2 7 0 5 1038 1282 302 22 27 chr6 59381655 59382057 -90134980 + MTD LTR MaLR 20 419 0 5 1038 2056 256 234 48 chr6 59382057 59382738 -90134299 + MTD-int LTR MaLR 1 823 -435 5 1038 357 24 0 0 chr6 59382738 59382780 -90134257 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1038 623 67 11 0 chr6 59382780 59382868 -90134169 + (GA)n Simple_repeat Simple_repeat 1 90 0 5 1038 2056 256 234 48 chr6 59382868 59383246 -90133791 + MTD-int LTR MaLR 824 1257 -1 5 1038 514 233 462 21 chr6 59383248 59383470 -90133567 + MTD LTR MaLR 102 421 0 5 1038 227 273 0 38 chr6 59383533 59383613 -90133424 + CT-rich Low_complexity Low_complexity 5 81 0 5 1038 433 288 82 35 chr6 59384285 59384517 -90132520 - MLT2B1 LTR ERVL -48 519 174 5 1038 412 317 111 34 chr6 59384608 59384750 -90132287 + L1MB7 LINE L1 5313 5466 -718 5 1038 1324 149 229 58 chr6 59384750 59385078 -90131959 + ORR1C2 LTR MaLR 1 384 0 5 1038 412 317 87 87 chr6 59385078 59385244 -90131793 + L1MB7 LINE L1 5467 5625 -549 5 1038 706 331 45 19 chr6 59385262 59385730 -90131307 + L1MB7 LINE L1 5695 6174 -10 5 1038 555 369 19 34 chr6 59386759 59386964 -90130073 + B3 SINE B2 2 203 -13 5 1038 365 118 0 0 chr6 59386998 59387049 -90129988 + HAL1-3A_ME LINE L1 1975 2025 -833 5 1038 4498 121 39 10 chr6 59389877 59390278 -90126759 - Lx3B LINE L1 0 6973 6547 5 1038 2988 62 31 0 chr6 59390278 59390666 -90126371 + MTB LTR MaLR 1 400 0 5 1038 4498 121 39 10 chr6 59390666 59390965 -90126072 - Lx3B LINE L1 -427 6546 6253 5 1038 385 260 15 12 chr6 59391322 59391433 -90125604 + MTD LTR MaLR 16 123 -284 5 1038 2029 233 23 144 chr6 59392115 59392807 -90124230 - RMER19C LTR ERVK -3 608 1 5 1038 315 0 0 0 chr6 59393259 59393294 -90123743 + (TAA)n Simple_repeat Simple_repeat 1 35 0 5 1038 514 329 25 6 chr6 59393510 59393669 -90123368 - RSINE1 SINE B4 -2 163 2 5 1038 1764 195 68 80 chr6 59394322 59394746 -90122291 - MTC LTR MaLR -2 419 1 5 1038 573 15 0 0 chr6 59394948 59395014 -90122023 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 5 1038 1145 253 117 47 chr6 59395025 59395562 -90121475 - RLTR26 LTR ERVK 0 642 1 5 1038 294 280 23 45 chr6 59395872 59396093 -90120944 + RMER17D LTR ERVK 231 446 -443 5 1038 1381 146 166 0 chr6 59396613 59396914 -90120123 - RMER1B Other Other -6 1060 710 5 1038 280 303 30 10 chr6 59396912 59397012 -90120025 - RMER1A Other Other -745 285 184 5 1038 332 273 185 62 chr6 59397079 59397136 -90119901 - RMER1B Other Other -726 340 308 5 1038 4427 141 51 44 chr6 59397136 59398036 -90119001 + RMER17A2 LTR ERVK 1 906 0 5 1038 332 261 262 41 chr6 59398036 59398168 -90118869 - RMER1B Other Other -759 307 131 5 1038 1347 144 56 32 chr6 59398178 59398525 -90118512 - L1_Mus3 LINE L1 0 6566 6209 5 1038 823 154 3 22 chr6 59399443 59399613 -90117424 - L1_Mus4 LINE L1 -82 6554 6366 5 1038 404 176 0 13 chr6 59399595 59399670 -90117367 + L1_Mus4 LINE L1 6188 6261 -375 5 1038 616 356 37 17 chr6 59399689 59399986 -90117051 - Lx9 LINE L1 -969 6675 6373 5 1038 516 101 0 0 chr6 59400013 59400102 -90116935 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 1038 1522 251 19 119 chr6 59400368 59401220 -90115817 - Lx9 LINE L1 -1068 5932 5130 5 1038 5590 77 53 25 chr6 59403476 59404326 -90112711 + L1_Mus2 LINE L1 5692 6565 -1 5 1038 189 175 0 0 chr6 59404955 59404995 -90112042 + T-rich Low_complexity Low_complexity 1 40 0 5 1038 351 0 0 0 chr6 59405133 59405172 -90111865 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1038 1008 97 0 27 chr6 59405288 59405437 -90111600 - B1_Mm SINE Alu 0 147 3 5 1038 266 346 78 19 chr6 59407153 59407359 -90109678 - RMER15 LTR ERVL -11 564 347 5 1038 2148 111 13 0 chr6 59407543 59407859 -90109178 + RLTR46 LTR ERVK 1 320 0 5 1038 1718 148 127 6 chr6 59408201 59408533 -90108504 - ORR1C1 LTR MaLR 0 378 7 5 1038 1368 256 60 20 chr6 59408843 59409245 -90107792 - MTD LTR MaLR 0 419 2 5 1038 252 0 0 0 chr6 59409255 59409283 -90107754 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1038 3108 170 97 30 chr6 59409283 59409981 -90107056 - RLTR13C1 LTR ERVK -110 698 1 5 1038 4733 125 5 12 chr6 59409981 59411051 -90105986 - Lx LINE L1 -313 6341 5288 5 1038 37015 53 12 3 chr6 59411056 59417520 -90099517 - L1Md_T LINE L1 -1 6581 99 5 1038 216 200 0 0 chr6 59417995 59418040 -90098997 + T-rich Low_complexity Low_complexity 1 45 0 5 1038 708 45 0 0 chr6 59418121 59418209 -90098828 + (TTTC)n Simple_repeat Simple_repeat 3 90 0 5 1038 304 68 0 0 chr6 59418210 59418254 -90098783 - B1_Mus2 SINE Alu -3 144 101 5 1038 231 325 30 0 chr6 59418344 59418435 -90098602 - PB1D10 SINE Alu -51 98 1 5 1038 1343 91 0 28 chr6 59418489 59418704 -90098333 + L1Md_F2 LINE L1 6374 6582 0 5 1038 388 250 57 19 chr6 59418719 59418825 -90098212 - MLT1D LTR MaLR -372 133 24 5 1038 485 295 22 58 chr6 59418936 59419073 -90097964 + B1F1 SINE Alu 3 134 -15 5 1038 340 379 147 19 chr6 59419128 59419448 -90097589 - MLT1K LTR MaLR -56 539 179 5 1038 269 299 67 52 chr6 59419485 59419619 -90097418 + BC1_Mm scRNA scRNA 1 136 -16 5 1038 25 31 0 0 chr6 59420357 59420389 -90096648 + AT_rich Low_complexity Low_complexity 1 32 0 5 1038 423 171 73 0 chr6 59420453 59420535 -90096502 + MERVL_2A-int LTR ERVL 4689 4776 -985 5 1038 1217 276 155 13 chr6 59420535 59421005 -90096032 + RMER20B LTR ERVK 1 537 -90 5 1038 4273 170 69 9 chr6 59421038 59421906 -90095131 + MERVL_2A-int LTR ERVL 4771 5690 -71 5 1038 416 245 14 14 chr6 59421906 59422047 -90094990 + MERVL_2A-int LTR ERVL 5621 5761 0 5 1038 1091 279 37 71 chr6 59422047 59422568 -90094469 + MT2B LTR ERVL 1 601 0 5 1038 1832 185 65 46 chr6 59422604 59423017 -90094020 - MTC LTR MaLR 0 421 1 6 1038 342 0 0 0 chr6 59423827 59423865 -90093172 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1038 4842 139 38 11 chr6 59423946 59425006 -90092031 + L1Md_F LINE L1 188 1270 -5454 6 1038 19498 76 6 0 chr6 59424983 59427801 -90089236 + L1Md_F LINE L1 1461 4294 -1589 6 1038 247 284 0 47 chr6 59427805 59427890 -90089147 - PB1D10 SINE Alu -29 88 8 6 1038 463 207 60 7 chr6 59427955 59428106 -90088931 - L1_Mur3 LINE L1 -473 5407 5249 6 1038 1051 265 80 8 chr6 59428117 59428588 -90088449 + Lx7 LINE L1 5401 5909 -1787 6 1038 576 366 123 8 chr6 59428662 59429150 -90087887 + Lx7 LINE L1 6132 6675 -1021 6 1038 7673 48 7 2 chr6 59429149 59430318 -90086719 - L1Md_F2 LINE L1 -2 6580 5409 6 1038 764 294 28 14 chr6 59430303 59430586 -90086451 + Lx7 LINE L1 6657 6943 -753 6 1038 25 65 0 0 chr6 59431405 59431451 -90085586 + AT_rich Low_complexity Low_complexity 1 46 0 6 1038 293 193 0 4 chr6 59431602 59431660 -90085377 + MTE2a LTR MaLR 1 56 -363 6 1038 2640 82 37 0 chr6 59431893 59432273 -90084764 - Lx3A LINE L1 -204 6777 6384 6 1038 303 141 0 0 chr6 59432557 59432621 -90084416 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1038 266 375 20 27 chr6 59433029 59433177 -90083860 + Lx8 LINE L1 6910 7056 -417 6 1038 25 0 0 0 chr6 59435192 59435217 -90081820 + AT_rich Low_complexity Low_complexity 1 25 0 6 1038 315 324 67 42 chr6 59435241 59435434 -90081603 - B3A SINE B2 0 198 1 6 1038 269 322 175 0 chr6 59435434 59435611 -90081426 - MER2 DNA MER2_type -118 227 20 6 1038 1978 146 0 7 chr6 59435689 59435999 -90081038 + RLTR10E LTR ERVK 1 308 -3 6 1038 186 265 0 0 chr6 59436320 59436388 -90080649 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1038 810 128 6 11 chr6 59436387 59436561 -90080476 + (GA)n Simple_repeat Simple_repeat 1 173 0 6 1038 314 349 98 21 chr6 59436740 59436831 -90080206 - MLT1C LTR MaLR -203 264 167 6 1038 1062 120 68 6 chr6 59436831 59437007 -90080030 - B2_Mm2 SINE B2 -6 189 3 6 1038 314 349 98 21 chr6 59437007 59437149 -90079888 - MLT1C LTR MaLR -301 166 13 6 1038 353 329 81 30 chr6 59437714 59438144 -90078893 + Kanga1 DNA Tc2 9 388 -1357 6 1038 1372 318 112 31 chr6 59439381 59440059 -90076978 - MTE-int LTR MaLR -847 733 1 6 1038 481 184 0 30 chr6 59440120 59440221 -90076816 - ORR1D1-int LTR MaLR -816 554 457 6 1038 1077 253 106 13 chr6 59440261 59440573 -90076464 - ORR1D1 LTR MaLR -28 346 6 6 1038 491 261 0 116 chr6 59440596 59440743 -90076294 - MTEa LTR MaLR -84 295 166 6 1038 193 29 0 56 chr6 59441383 59441419 -90075618 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 1038 23 54 0 0 chr6 59441547 59441584 -90075453 + AT_rich Low_complexity Low_complexity 1 37 0 6 1038 235 73 24 0 chr6 59441848 59441889 -90075148 + Lx9 LINE L1 7602 7643 -1 6 1038 312 234 55 42 chr6 59441916 59442081 -90074956 - Lx9 LINE L1 -20 7624 7458 6 1038 449 267 6 0 chr6 59442081 59442257 -90074780 + (TA)n Simple_repeat Simple_repeat 2 178 0 6 1038 501 268 81 5 chr6 59442262 59442483 -90074554 - Lx9 LINE L1 -126 7518 7281 6 1038 457 180 21 78 chr6 59442498 59442691 -90074346 - RMER17C LTR ERVK -137 273 92 6 1038 2377 269 59 45 chr6 59442691 59442845 -90074192 - Lx9 LINE L1 -354 7290 7135 6 1038 2711 110 14 5 chr6 59442845 59443266 -90073771 - L1_Mus3 LINE L1 -4 6634 6210 6 1038 2650 269 59 45 chr6 59443266 59444006 -90073031 - Lx9 LINE L1 -510 7134 6383 6 1038 365 39 0 19 chr6 59444041 59444093 -90072944 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1038 705 246 79 22 chr6 59444224 59444453 -90072584 - L1_Rod LINE L1 -957 4890 4649 6 1038 185 140 0 23 chr6 59444461 59444505 -90072532 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1038 832 232 26 23 chr6 59444554 59444819 -90072218 - L1_Rod LINE L1 -2986 2861 2596 6 1038 211 28 27 27 chr6 59444819 59444856 -90072181 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 6 1038 835 241 133 8 chr6 59444863 59445303 -90071734 - L1_Rod LINE L1 -4296 1551 1066 6 1038 288 0 0 0 chr6 59445433 59445465 -90071572 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1038 699 289 10 10 chr6 59445471 59445667 -90071370 - L1_Rod LINE L1 -6529 1079 884 6 1038 324 320 155 45 chr6 59445872 59446057 -90070980 + Lx8 LINE L1 7117 7341 -132 6 1038 243 0 0 0 chr6 59446057 59446084 -90070953 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1038 324 320 155 45 chr6 59446084 59446189 -90070848 + Lx8 LINE L1 7342 7439 -34 6 1038 21 0 0 0 chr6 59446320 59446341 -90070696 + AT_rich Low_complexity Low_complexity 1 21 0 6 1038 187 73 73 0 chr6 59446922 59446963 -90070074 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1038 21 0 0 0 chr6 59447092 59447113 -90069924 + AT_rich Low_complexity Low_complexity 1 21 0 6 1038 579 266 22 168 chr6 59447116 59447342 -90069695 + B3A SINE B2 2 194 -1 6 1038 31 0 0 0 chr6 59447508 59447539 -90069498 + AT_rich Low_complexity Low_complexity 1 31 0 6 1038 819 57 0 0 chr6 59447602 59447707 -90069330 + (TCTCC)n Simple_repeat Simple_repeat 4 108 0 6 1038 21 0 0 0 chr6 59447906 59447927 -90069110 + AT_rich Low_complexity Low_complexity 1 21 0 6 1038 432 0 0 0 chr6 59448100 59448148 -90068889 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1038 374 259 0 0 chr6 59448488 59448569 -90068468 - RMER12 LTR ERVK -471 851 771 6 1038 198 0 0 0 chr6 59448569 59448591 -90068446 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1038 1279 154 72 0 chr6 59448603 59448811 -90068226 - ORR1A2 LTR MaLR -104 223 1 6 1038 1545 147 12 0 chr6 59448811 59449069 -90067968 - ORR1A2-int LTR MaLR 0 1963 1703 6 1038 227 288 85 59 chr6 59449013 59449131 -90067906 + ORR1A1-int LTR MaLR 1464 1584 -208 6 1038 27 62 0 0 chr6 59449553 59449601 -90067436 + AT_rich Low_complexity Low_complexity 1 48 0 6 1038 267 410 0 0 chr6 59449602 59449707 -90067330 - RMER15 LTR ERVL -106 469 365 6 1038 201 263 0 17 chr6 59449947 59450005 -90067032 + T-rich Low_complexity Low_complexity 3 59 0 6 1038 5619 82 4 1 chr6 59450011 59450766 -90066271 - L1_Mus3 LINE L1 -7 6631 5875 6 1038 1253 243 73 107 chr6 59450768 59451313 -90065724 + RMER19C LTR ERVK 159 735 -2 6 1038 22 0 0 0 chr6 59451685 59451707 -90065330 + AT_rich Low_complexity Low_complexity 1 22 0 6 1038 1594 163 71 0 chr6 59451707 59451989 -90065048 - Lx LINE L1 -2 6995 6694 6 1038 4367 41 8 2 chr6 59452164 59452698 -90064339 + L1Md_F3 LINE L1 6045 6581 -3 6 1038 6499 124 33 13 chr6 59452698 59453436 -90063601 - Lx LINE L1 -10 6644 5902 6 1038 405 0 0 0 chr6 59453436 59453481 -90063556 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 6 1038 7409 170 30 8 chr6 59453481 59454951 -90062086 - Lx LINE L1 -753 5901 4381 6 1038 7092 174 35 3 chr6 59454942 59456364 -90060673 + L1_Mur1 LINE L1 2688 4153 -1733 6 1038 626 164 8 30 chr6 59456372 59456504 -90060533 + L1_Mm LINE L1 4266 4394 -1489 6 1038 1202 210 103 21 chr6 59456641 59456972 -90060065 + Lx9 LINE L1 7283 7640 -4 6 1038 24 32 0 0 chr6 59456972 59457003 -90060034 + AT_rich Low_complexity Low_complexity 1 31 0 6 1038 25 65 0 0 chr6 59457020 59457066 -90059971 + AT_rich Low_complexity Low_complexity 1 46 0 6 1038 234 289 12 50 chr6 59457072 59457152 -90059885 + B4A SINE B4 216 292 0 6 1038 21 0 0 0 chr6 59457563 59457584 -90059453 + AT_rich Low_complexity Low_complexity 1 21 0 6 1038 1590 176 29 65 chr6 59458271 59458612 -90058425 - ORR1A4 LTR MaLR 0 329 1 6 1038 308 271 140 21 chr6 59458850 59458993 -90058044 + L1_Rod LINE L1 3813 3972 -1875 6 1038 297 145 0 0 chr6 59459781 59459843 -90057194 + (ATG)n Simple_repeat Simple_repeat 3 64 0 6 1038 435 38 0 0 chr6 59459870 59459923 -90057114 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 6 1038 195 146 0 0 chr6 59459963 59460004 -90057033 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1038 32 0 0 0 chr6 59460154 59460186 -90056851 + AT_rich Low_complexity Low_complexity 1 32 0 6 1038 53 17 0 0 chr6 59460259 59460319 -90056718 + AT_rich Low_complexity Low_complexity 1 60 0 6 1038 23 33 0 0 chr6 59461070 59461100 -90055937 + AT_rich Low_complexity Low_complexity 1 30 0 6 1038 3348 33 0 0 chr6 59461429 59461823 -90055214 + L1Md_F2 LINE L1 5193 5586 -297 6 1038 8040 50 1 2 chr6 59461823 59462820 -90054217 + L1Md_F2 LINE L1 5587 6582 0 6 1038 221 338 0 48 chr6 59463296 59463380 -90053657 + PB1D10 SINE Alu 15 94 -23 6 1038 216 330 81 48 chr6 59463380 59463420 -90053617 + ID_B1 SINE B4 96 223 -1 6 1038 9751 113 1 8 chr6 59464642 59466800 -90050237 + L1_Mus1 LINE L1 4424 6565 -2 6 1038 319 172 16 0 chr6 59466816 59466880 -90050157 + RCHARR1 DNA MER1_type 767 831 -143 6 1038 1743 119 0 4 chr6 59466882 59467152 -90049885 - L1VL4 LINE L1 -5510 792 524 6 1038 21 95 0 0 chr6 59467458 59467521 -90049516 + AT_rich Low_complexity Low_complexity 1 63 0 6 1038 23 0 0 0 chr6 59467974 59467997 -90049040 + AT_rich Low_complexity Low_complexity 1 23 0 6 1038 227 230 64 91 chr6 59468417 59468527 -90048510 - L1M3e LINE L1 -6844 186 80 6 1038 3341 46 2 0 chr6 59468981 59469392 -90047645 + L1Md_T LINE L1 6171 6582 0 6 1038 4593 103 46 0 chr6 59469700 59470369 -90046668 - L1_Mus1 LINE L1 -1 6566 5867 6 1038 1741 54 14 1 chr6 59470369 59470608 -90046429 - L1_Mus1 LINE L1 -26 6541 6301 6 1038 693 92 0 0 chr6 59471266 59471364 -90045673 + (CACG)n Simple_repeat Simple_repeat 2 99 0 6 1038 228 377 113 38 chr6 59471642 59472067 -90044970 + L2 LINE L2 2402 2858 -561 6 1038 21 36 0 0 chr6 59472413 59472441 -90044596 + AT_rich Low_complexity Low_complexity 1 28 0 6 1038 771 211 131 5 chr6 59474489 59474680 -90042357 - B3 SINE B2 -1 215 1 6 1038 216 86 0 0 chr6 59475253 59475288 -90041749 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1038 387 243 66 28 chr6 59475877 59476063 -90040974 - RLTR21 LTR ERVK -136 1436 1285 6 1038 225 233 94 62 chr6 59476035 59476099 -90040938 + LTR33A_ LTR ERVL 152 217 -314 6 1038 189 0 0 0 chr6 59476099 59476120 -90040917 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1038 444 104 0 0 chr6 59476120 59476187 -90040850 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1038 21207 148 18 10 chr6 59476187 59478938 -90038099 - L1VL1 LINE L1 -769 5114 2341 6 1038 2480 78 8 39 chr6 59478938 59479299 -90037738 - L1_Mus1 LINE L1 0 6567 6218 6 1038 21207 163 40 18 chr6 59479299 59481194 -90035843 - L1VL1 LINE L1 -3543 2340 397 6 1038 332 269 23 70 chr6 59481181 59481321 -90035716 - L1_Rod LINE L1 -1382 4465 4327 6 1038 3509 83 0 18 chr6 59481321 59481812 -90035225 - L1Md_F2 LINE L1 -3 6579 6098 6 1038 332 269 23 70 chr6 59481812 59481843 -90035194 - L1_Rod LINE L1 -1521 4326 4302 6 1038 1057 277 56 29 chr6 59481861 59481999 -90035038 + L1_Rod LINE L1 5076 5212 -635 7 1038 360 43 0 0 chr6 59481999 59482045 -90034992 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 7 1038 1057 277 56 29 chr6 59482045 59482319 -90034718 + L1_Rod LINE L1 5213 5499 -348 7 1038 12742 100 6 19 chr6 59482331 59485018 -90032019 + Lx3_Mus LINE L1 4009 6655 -354 7 1038 2350 55 26 3 chr6 59485222 59485534 -90031503 - IAPLTR2b LTR ERVK -8 319 1 7 1038 251 71 24 0 chr6 59487465 59487507 -90029530 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 7 1038 756 0 0 0 chr6 59487712 59487796 -90029241 + (TTCC)n Simple_repeat Simple_repeat 4 87 0 7 1038 417 20 0 0 chr6 59487799 59487849 -90029188 + (CCTG)n Simple_repeat Simple_repeat 1 50 0 7 1038 625 220 209 23 chr6 59489264 59489436 -90027601 - B3 SINE B2 -10 206 3 7 1038 4812 176 9 1 chr6 59490790 59491673 -90025364 - L1_Mm LINE L1 -342 5541 4652 7 1038 38409 7 1 0 chr6 59491674 59496837 -90020200 + L1Md_A LINE L1 422 5586 -297 7 1038 8880 9 0 0 chr6 59496837 59497833 -90019204 + L1Md_A LINE L1 5587 6582 0 7 1038 38409 7 1 1 chr6 59497833 59497859 -90019178 + L1Md_A LINE L1 5587 5613 -270 7 1038 2527 167 0 0 chr6 59497836 59498284 -90018753 - L1_Mur2 LINE L1 -1221 4656 4209 7 1038 3063 149 10 0 chr6 59498281 59498798 -90018239 + Lx LINE L1 5550 6071 -583 7 1038 427 206 21 21 chr6 59498794 59498888 -90018149 - Lx2 LINE L1 -539 6458 6365 7 1038 1043 109 7 0 chr6 59499054 59499201 -90017836 - B1_Mus1 SINE Alu 0 148 1 7 1038 259 274 0 0 chr6 59499344 59499406 -90017631 + MLT2B3 LTR ERVL 1 62 -492 7 1038 2962 289 50 3 chr6 59500043 59500310 -90016727 + L1_Mur3 LINE L1 976 1251 -6477 1 1038 288 0 0 0 chr6 59500310 59500342 -90016695 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1038 357 24 0 0 chr6 59500342 59500383 -90016654 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1038 2962 238 169 28 chr6 59500383 59500506 -90016531 + L1_Mur3 LINE L1 1252 1395 -4485 1 1038 1140 230 111 44 chr6 59500506 59500866 -90016171 - ORR1C2 LTR MaLR 0 384 1 4 1038 2962 238 169 28 chr6 59500866 59500992 -90016045 + L1_Mur3 LINE L1 1396 1539 -4341 1 1038 180 0 0 0 chr6 59500992 59501012 -90016025 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1038 2962 238 169 28 chr6 59501012 59502032 -90015005 + L1_Mur3 LINE L1 1540 2695 -3185 1 1038 285 118 0 0 chr6 59502032 59502083 -90014954 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1038 2962 238 169 28 chr6 59502083 59502233 -90014804 + L1_Mur3 LINE L1 2696 2875 -3005 1 1038 1339 176 105 21 chr6 59502286 59502611 -90014426 + RMER1B Other Other 499 850 -216 7 1038 274 243 24 65 chr6 59502633 59502756 -90014281 + RMER1A Other Other 913 1030 0 7 1038 487 274 27 5 chr6 59502724 59502944 -90014093 + L1_Mur3 LINE L1 2851 3075 -2805 1 1038 493 271 172 57 chr6 59502948 59503406 -90013631 - RMER5 LTR ERV1 -23 511 1 8 1038 277 303 56 11 chr6 59503407 59503497 -90013540 + MLT2B4 LTR ERVL 56 149 -407 9 1038 224 0 0 61 chr6 59503796 59503829 -90013208 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 1 1038 667 233 16 0 chr6 59504230 59504359 -90012678 - ETnERV2-int LTR ERVK -206 7200 7070 1 1038 216 0 0 0 chr6 59504374 59504398 -90012639 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1038 1061 244 34 4 chr6 59504398 59504661 -90012376 + MTD LTR MaLR 13 283 -136 1 1038 225 0 0 0 chr6 59504688 59504713 -90012324 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1038 186 43 0 0 chr6 59504714 59504737 -90012300 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 1 1038 1445 121 50 0 chr6 59505280 59505520 -90011517 - L1_Mm LINE L1 -357 5526 5275 1 1038 32 0 0 0 chr6 59505858 59505890 -90011147 + AT_rich Low_complexity Low_complexity 1 32 0 1 1039 1319 70 0 6 chr6 59507398 59507571 -90009466 - B2_Mm2 SINE B2 -23 172 1 1 1039 579 274 72 28 chr6 59507590 59507770 -90009267 - B3 SINE B2 -6 210 23 1 1039 216 265 0 0 chr6 59508250 59508318 -90008719 + T-rich Low_complexity Low_complexity 1 68 0 2 1039 32689 69 3 2 chr6 59508325 59513817 -90003220 - L1Md_F2 LINE L1 -19 6566 975 2 1039 495 69 0 0 chr6 59515253 59515325 -90001712 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1039 297 0 0 0 chr6 59515325 59515357 -90001680 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1039 324 116 0 0 chr6 59515907 59515950 -90001087 - HAL1-3A_ME LINE L1 -840 2018 1976 2 1039 267 153 40 20 chr6 59515960 59516060 -90000977 + (TG)n Simple_repeat Simple_repeat 2 103 0 2 1039 245 263 27 44 chr6 59516107 59516290 -90000747 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 2 1039 318 65 32 16 chr6 59516302 59516365 -90000672 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1039 3000 63 8 0 chr6 59516695 59517075 -89999962 - L1Md_F2 LINE L1 0 6582 6200 2 1039 1117 270 76 12 chr6 59517632 59517962 -89999075 - ORR1D2 LTR MaLR -19 351 1 2 1039 835 340 114 31 chr6 59518449 59518931 -89998106 - MT2A LTR ERVL -10 523 2 3 1039 2783 102 19 10 chr6 59520403 59520820 -89996217 + BGLII LTR ERVK 1 421 0 3 1039 318 26 0 0 chr6 59521510 59521549 -89995488 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1039 189 0 0 0 chr6 59521587 59521608 -89995429 + (TA)n Simple_repeat Simple_repeat 2 22 0 3 1039 315 0 0 0 chr6 59521608 59521642 -89995395 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1039 234 308 119 30 chr6 59521729 59521863 -89995174 + B1F1 SINE Alu 2 147 -2 3 1039 864 225 26 31 chr6 59522180 59522373 -89994664 + MT2A LTR ERVL 9 200 -333 3 1039 23 68 0 0 chr6 59522549 59522593 -89994444 + AT_rich Low_complexity Low_complexity 1 44 0 3 1039 21415 89 6 7 chr6 59522697 59526417 -89990620 + L1Md_A LINE L1 632 4340 -1543 3 1039 543 149 0 0 chr6 59526636 59526743 -89990294 + (TCTG)n Simple_repeat Simple_repeat 4 110 0 3 1039 311 309 73 0 chr6 59526785 59526908 -89990129 + RMER12 LTR ERVK 705 836 -486 4 1039 729 23 0 0 chr6 59526908 59526995 -89990042 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 4 1039 378 0 0 0 chr6 59527199 59527241 -89989796 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1039 303 344 19 32 chr6 59527367 59527523 -89989514 - Lx9 LINE L1 -406 7238 7085 4 1039 414 347 114 34 chr6 59527517 59527842 -89989195 - Lx9 LINE L1 -930 6714 6364 4 1039 475 312 32 51 chr6 59528199 59528634 -89988403 - L1M3 LINE L1 -2217 3923 3497 4 1039 21 36 0 0 chr6 59529100 59529128 -89987909 + AT_rich Low_complexity Low_complexity 1 28 0 4 1039 2124 93 0 13 chr6 59529368 59529673 -89987364 + L1_Mus2 LINE L1 5978 6278 -288 4 1039 4973 161 30 7 chr6 59529680 59530590 -89986447 - Lx3B LINE L1 -308 6665 5735 4 1039 1584 183 16 16 chr6 59530590 59530896 -89986141 + Lx3A LINE L1 6668 6973 -8 4 1039 23 54 0 0 chr6 59530898 59530935 -89986102 + AT_rich Low_complexity Low_complexity 1 37 0 4 1039 422 255 19 9 chr6 59530967 59531074 -89985963 + ORR1C1 LTR MaLR 1 108 -270 5 1039 3715 152 57 0 chr6 59531081 59531770 -89985267 + L1Md_F LINE L1 380 1107 -5509 5 1039 5155 28 2 0 chr6 59531767 59532409 -89984628 + L1Md_T LINE L1 4944 5586 -297 5 1039 6277 86 27 57 chr6 59532410 59533435 -89983602 + L1Md_T LINE L1 5588 6582 0 5 1039 3140 78 0 2 chr6 59533473 59533895 -89983142 + L1Md_F2 LINE L1 6162 6582 0 5 1039 3076 87 2 0 chr6 59533903 59534460 -89982577 + L1Md_F LINE L1 1132 1689 -4194 5 1039 2873 18 0 53 chr6 59534460 59534816 -89982221 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1039 53627 17 17 1 chr6 59534816 59541190 -89975847 + IAPEz-int LTR ERVK 8 6481 0 5 1039 2873 18 0 53 chr6 59541190 59541546 -89975491 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1039 25734 100 12 2 chr6 59541546 59541832 -89975205 + L1Md_F LINE L1 1684 1969 -3914 5 1039 261 0 0 0 chr6 59541832 59541861 -89975176 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1039 25734 100 12 2 chr6 59541861 59545520 -89971517 + L1Md_F LINE L1 1970 5667 -216 5 1039 2938 31 2 89 chr6 59545520 59545945 -89971092 - RLTR10 LTR ERVK -2 388 1 5 1039 8133 23 6 2 chr6 59545947 59546936 -89970101 - RLTR10-int LTR ERVK -3 1984 992 5 1039 329 258 39 15 chr6 59547019 59547149 -89969888 - RLTR10-int LTR ERVK -5987 1594 1462 5 1039 7089 41 33 13 chr6 59547213 59548152 -89968885 - RLTR10-int LTR ERVK -989 998 41 5 1039 2948 28 2 89 chr6 59548164 59548589 -89968448 - RLTR10 LTR ERVK -2 388 1 5 1039 774 100 0 0 chr6 59548589 59548699 -89968338 + L1_Mm LINE L1 5459 5568 -315 5 1039 297 288 62 31 chr6 59548699 59548718 -89968319 + ORR1B2 LTR MaLR 37 54 -313 5 1039 6765 107 14 7 chr6 59548718 59549694 -89967343 + L1Md_F2 LINE L1 5588 6570 -12 6 1039 297 288 20 102 chr6 59549694 59549824 -89967213 + ORR1B2 LTR MaLR 55 194 -190 5 1039 318 93 13 51 chr6 59549826 59549905 -89967132 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 6 1039 226 204 9 170 chr6 59549905 59550017 -89967020 + ORR1B2 LTR MaLR 164 257 -121 5 1039 2175 138 90 8 chr6 59550017 59550539 -89966498 - Lx3B LINE L1 -916 6057 5511 6 1039 1134 262 56 28 chr6 59550598 59551248 -89965789 - MYSERV-int LTR ERVK -638 5912 5206 6 1039 1347 75 304 0 chr6 59551284 59551521 -89965516 - L1_Mus3 LINE L1 -456 6182 5874 6 1039 2499 132 22 59 chr6 59551521 59551979 -89965058 + L1_Mus3 LINE L1 6196 6636 -2 6 1039 250 299 69 83 chr6 59552118 59552552 -89964485 - MYSERV16_I-int LTR ERVK -1561 765 338 6 1039 3995 231 14 51 chr6 59553935 59555000 -89962037 + RLTR21 LTR ERVK 27 1052 -520 6 1039 423 0 0 0 chr6 59555042 59555089 -89961948 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1039 21 0 0 0 chr6 59555438 59555459 -89961578 + AT_rich Low_complexity Low_complexity 1 21 0 6 1039 4112 189 57 29 chr6 59555624 59557520 -89959517 + Lx LINE L1 4984 6883 -114 6 1039 25 0 0 0 chr6 59557520 59557545 -89959492 + AT_rich Low_complexity Low_complexity 1 25 0 7 1039 224 194 16 16 chr6 59557870 59557933 -89959104 + (TTATA)n Simple_repeat Simple_repeat 3 65 0 7 1039 24 67 0 0 chr6 59557933 59557978 -89959059 + AT_rich Low_complexity Low_complexity 1 45 0 7 1039 31 26 0 0 chr6 59558016 59558054 -89958983 + AT_rich Low_complexity Low_complexity 1 38 0 7 1039 268 241 111 25 chr6 59559562 59559643 -89957394 + B3 SINE B2 129 216 0 7 1039 23 0 0 0 chr6 59559695 59559718 -89957319 + AT_rich Low_complexity Low_complexity 1 23 0 7 1039 1621 32 0 0 chr6 59560132 59560320 -89956717 - L1Md_F2 LINE L1 -218 6364 6177 7 1039 302 0 0 0 chr6 59561171 59561206 -89955831 - U2 snRNA snRNA -153 35 1 7 1039 227 161 0 18 chr6 59561738 59561795 -89955242 + CT-rich Low_complexity Low_complexity 5 60 0 7 1039 595 254 49 63 chr6 59561795 59562018 -89955019 + ORR1C1 LTR MaLR 159 378 0 7 1039 1470 232 51 61 chr6 59562243 59562734 -89954303 + RMER4A LTR ERVK 3 566 -19 8 1039 438 276 11 114 chr6 59562711 59562887 -89954150 - ORR1C1 LTR MaLR -192 186 29 8 1039 417 292 55 139 chr6 59563164 59563474 -89953563 - RLTR12B LTR ERVK -198 330 47 8 1039 1781 246 68 12 chr6 59563515 59564090 -89952947 - MYSERV-int LTR ERVK -15 6535 5929 8 1039 321 68 0 0 chr6 59564154 59564198 -89952839 + (T)n Simple_repeat Simple_repeat 1 44 0 8 1039 917 231 53 68 chr6 59564198 59564519 -89952518 - MYSERV-int LTR ERVK -613 5937 5622 8 1039 2452 87 43 11 chr6 59564531 59564905 -89952132 + L1_Mus4 LINE L1 6250 6635 -1 8 1039 1379 193 24 4 chr6 59564905 59565155 -89951882 + ORR1B1-int LTR MaLR 1154 1408 -555 8 1039 4311 145 46 26 chr6 59565163 59565921 -89951116 - Lx LINE L1 -2 6652 5880 8 1039 1599 170 3 10 chr6 59565921 59566212 -89950825 + L1_Mm LINE L1 5251 5539 -344 8 1039 1875 195 103 57 chr6 59566212 59566815 -89950222 + ORR1B1-int LTR MaLR 1002 1924 -39 8 1039 1512 253 11 13 chr6 59566815 59567187 -89949850 + ORR1B1 LTR MaLR 3 373 -21 8 1039 367 295 66 9 chr6 59567187 59567293 -89949744 + B1_Mus1 SINE Alu 2 113 -35 8 1039 3182 181 16 2 chr6 59567238 59567819 -89949218 + ORR1B1-int LTR MaLR 781 1369 -594 8 1039 434 18 18 0 chr6 59568158 59568213 -89948824 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 9 1039 559 354 26 45 chr6 59568278 59568428 -89948609 - Lx9 LINE L1 -145 7499 7349 9 1039 441 0 0 0 chr6 59568428 59568477 -89948560 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 9 1039 559 354 26 45 chr6 59568477 59568749 -89948288 - Lx9 LINE L1 -296 7348 7085 9 1039 643 355 44 29 chr6 59568738 59569078 -89947959 - Lx9 LINE L1 -925 6719 6375 9 1039 1248 184 229 22 chr6 59569459 59569821 -89947216 + RMER1B Other Other 619 1055 -11 9 1039 706 215 60 18 chr6 59569801 59570019 -89947018 + L1_Mur3 LINE L1 2853 3079 -2801 9 1039 235 230 125 86 chr6 59570019 59570171 -89946866 - RMER5 LTR ERV1 -23 511 354 9 1039 328 278 135 42 chr6 59570227 59570464 -89946573 - RMER5 LTR ERV1 -275 259 1 9 1039 1113 300 56 26 chr6 59570909 59571299 -89945738 + MTD LTR MaLR 13 414 -5 9 1039 25 51 0 0 chr6 59572302 59572341 -89944696 + AT_rich Low_complexity Low_complexity 1 39 0 9 1039 2301 134 6 0 chr6 59572414 59572765 -89944272 + L1_Mus3 LINE L1 6263 6615 -23 9 1039 364 52 17 33 chr6 59572770 59572830 -89944207 + (TAA)n Simple_repeat Simple_repeat 3 61 0 9 1039 5236 169 30 30 chr6 59573077 59574702 -89942335 + L1VL2 LINE L1 445 2059 -1556 1 1039 29697 100 11 12 chr6 59574700 59579891 -89937146 + L1Md_F3 LINE L1 398 5584 -299 1 1039 6911 74 50 8 chr6 59579893 59580851 -89936186 + L1Md_F3 LINE L1 5587 6584 0 1 1039 35443 35 0 0 chr6 59580858 59586175 -89930862 + L1Md_T LINE L1 176 5589 -297 1 1039 8930 6 0 3 chr6 59586175 59587174 -89929863 + L1Md_T LINE L1 5590 6585 0 1 1039 3055 185 5 11 chr6 59587175 59587803 -89929234 - MusHAL1 LINE L1 -940 1772 1148 1 1039 4901 72 0 6 chr6 59587803 59588445 -89928592 - L1Md_F2 LINE L1 -12 6570 5933 1 1039 17433 80 6 1 chr6 59588445 59591026 -89926011 - L1Md_F2 LINE L1 -18 6566 3518 1 1039 531 153 0 0 chr6 59591017 59591102 -89925935 + MusHAL1 LINE L1 1759 1843 -869 1 1039 4154 237 40 15 chr6 59591106 59591128 -89925909 + Lx2B LINE L1 5878 5899 -1101 1 1039 357 109 0 0 chr6 59591128 59591183 -89925854 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1 1039 4154 237 40 15 chr6 59591183 59592250 -89924787 + Lx2B LINE L1 5900 6995 -5 1 1039 1920 277 68 49 chr6 59592378 59593355 -89923682 + MYSERV-int LTR ERVK 3775 4769 -1781 1 1039 1024 187 38 17 chr6 59593443 59593682 -89923355 + Lx3B LINE L1 6484 6727 -246 1 1039 20801 91 22 16 chr6 59593680 59597964 -89919073 + L1Md_F2 LINE L1 98 4293 -1590 1 1039 2787 64 0 0 chr6 59597965 59598325 -89918712 + L1Md_F2 LINE L1 5227 5586 -297 1 1039 7643 56 23 1 chr6 59598325 59599298 -89917739 + L1Md_F2 LINE L1 5587 6580 -2 1 1039 896 238 27 35 chr6 59599298 59599555 -89917482 + Lx3B LINE L1 6715 6969 -4 1 1039 705 24 0 0 chr6 59599575 59599658 -89917379 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1039 261 284 57 65 chr6 59599807 59599931 -89917106 + RLTR12B LTR ERVK 198 320 -208 1 1039 1185 258 43 65 chr6 59600289 59600658 -89916379 + ORR1C1 LTR MaLR 18 378 0 1 1039 1196 215 70 24 chr6 59601149 59601237 -89915800 - RMER4A LTR ERVK -27 439 355 1 1039 639 57 0 0 chr6 59601237 59601325 -89915712 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 1039 1196 238 86 65 chr6 59601325 59601675 -89915362 - RMER4A LTR ERVK -112 354 4 1 1039 27 0 0 0 chr6 59601775 59601802 -89915235 + AT_rich Low_complexity Low_complexity 1 27 0 1 1039 1839 71 3 121 chr6 59604033 59604355 -89912682 - RLTR10B LTR ERVK 0 292 9 1 1039 311 71 0 0 chr6 59604363 59604405 -89912632 - RLTR10B LTR ERVK -250 42 1 1 1039 35 0 0 0 chr6 59605342 59605377 -89911660 + AT_rich Low_complexity Low_complexity 1 35 0 1 1039 5417 53 1 1 chr6 59605388 59606060 -89910977 - L1Md_F2 LINE L1 -1 5882 5211 1 1039 5406 61 0 6 chr6 59606060 59606750 -89910287 + L1Md_F2 LINE L1 5885 6570 -12 1 1039 499 207 104 22 chr6 59608470 59608651 -89908386 - RLTR21 LTR ERVK -115 1457 1285 1 1039 544 194 218 45 chr6 59608672 59608683 -89908354 + RLTR10D LTR ERVK 43 54 -305 1 1039 432 0 0 0 chr6 59608683 59608731 -89908306 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1039 544 194 218 45 chr6 59608731 59608962 -89908075 + RLTR10D LTR ERVK 55 327 -32 1 1039 2848 223 115 76 chr6 59608975 59609940 -89907097 - RLTR21 LTR ERVK -534 1038 36 1 1039 200 143 0 23 chr6 59610095 59610138 -89906899 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1039 302 234 119 14 chr6 59610221 59610364 -89906673 + Lx9 LINE L1 7486 7643 -1 1 1039 589 320 60 56 chr6 59610617 59610885 -89906152 + RLTR12B LTR ERVK 35 303 -225 1 1039 1405 294 46 50 chr6 59611281 59611783 -89905254 - RMER19C LTR ERVK 0 611 112 1 1039 477 186 99 29 chr6 59611840 59612083 -89904954 - MurERV4_19-int LTR ERVK -9 5771 5512 1 1039 3963 195 138 6 chr6 59612095 59613438 -89903599 - Lx2B LINE L1 -812 6188 4661 1 1039 510 17 0 0 chr6 59613442 59613501 -89903536 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1039 1227 223 33 64 chr6 59613514 59613873 -89903164 - RMER4B LTR ERVK -237 348 1 1 1039 4847 200 15 67 chr6 59613950 59614572 -89902465 - L1_Mur2 LINE L1 -6 5871 5319 1 1039 1178 62 0 7 chr6 59614572 59614719 -89902318 - B1_Mm SINE Alu 0 147 2 1 1039 4847 200 15 67 chr6 59614719 59615357 -89901680 - L1_Mur2 LINE L1 -559 5318 4676 1 1039 290 304 60 128 chr6 59615381 59615824 -89901213 + RLTR11A2 LTR ERVK 126 513 -14 1 1039 272 222 96 24 chr6 59615951 59616034 -89901003 - RLTR25A LTR ERVK -493 610 522 1 1039 783 73 0 0 chr6 59615969 59616079 -89900958 - B1_Mus1 SINE Alu -37 111 2 1 1039 1580 255 29 36 chr6 59616079 59616601 -89900436 - RMER19B LTR ERVK -241 661 107 1 1039 657 192 55 17 chr6 59616624 59616862 -89900175 - MurERV4_19-int LTR ERVK -2 5778 5532 1 1039 5169 215 49 42 chr6 59616880 59617984 -89899053 - Lx2B LINE L1 -59 6941 5852 1 1039 243 0 0 0 chr6 59617984 59618011 -89899026 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1039 5169 185 229 18 chr6 59618011 59619099 -89897938 - Lx2B LINE L1 -1149 5851 4538 1 1039 24 0 0 0 chr6 59619193 59619217 -89897820 + AT_rich Low_complexity Low_complexity 1 24 0 1 1039 5494 191 36 19 chr6 59619225 59620391 -89896646 - Lx3C LINE L1 -1 6975 5790 1 1039 883 172 50 11 chr6 59620397 59620579 -89896458 + Lx3A LINE L1 6786 6974 -7 1 1039 1062 168 5 0 chr6 59620604 59620800 -89896237 - Lx3C LINE L1 -1193 5783 5587 1 1039 252 0 0 0 chr6 59620869 59620897 -89896140 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1039 470 267 84 26 chr6 59621023 59621177 -89895860 + RMER4A LTR ERVK 243 405 -61 1 1039 427 241 30 30 chr6 59621185 59621352 -89895685 + MYSERV6-int LTR ERVK 5301 5467 -1083 1 1039 13097 171 95 6 chr6 59621386 59625187 -89891850 - L1_Mus4 LINE L1 -8 6628 2456 1 1039 34831 35 3 8 chr6 59625189 59630325 -89886712 + L1Md_T LINE L1 480 5586 -297 1 1039 8076 49 0 6 chr6 59630325 59631327 -89885710 + L1Md_T LINE L1 5587 6582 0 1 1039 6260 128 34 21 chr6 59631330 59632558 -89884479 - MusHAL1 LINE L1 -1450 1262 19 1 1039 1614 267 69 72 chr6 59632620 59632747 -89884290 + MYSERV6-int LTR ERVK 5457 5586 -964 1 1039 6553 105 47 7 chr6 59632747 59633731 -89883306 + RLTR13D5 LTR ERVK 1 1023 0 1 1039 1630 254 70 58 chr6 59633731 59634680 -89882357 + MYSERV6-int LTR ERVK 8275 8903 -56 1 1039 581 256 151 47 chr6 59634712 59634991 -89882046 + RLTR12B LTR ERVK 11 311 -257 1 1039 1846 218 40 135 chr6 59635043 59635689 -89881348 + LTRIS_Mus LTR ERV1 3 587 0 1 129 10974 238 21 35 chr6 59635691 59641026 -89876011 + MuRRS-int LTR ERV1 5 5420 -2358 1 1040 233 222 148 0 chr6 59641032 59641086 -89875951 + RLTR6_Mm LTR ERV1 523 584 -70 1 1040 291 269 0 0 chr6 59641414 59641492 -89875545 + ORR1C1 LTR MaLR 29 106 -272 1 1040 279 0 0 0 chr6 59642047 59642078 -89874959 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1040 25 75 0 0 chr6 59642344 59642397 -89874640 + AT_rich Low_complexity Low_complexity 1 53 0 1 1040 2860 11 5 135 chr6 59642909 59643331 -89873706 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1040 8475 67 71 12 chr6 59643331 59644564 -89872473 + IAPEz-int LTR ERVK 8 1313 -5168 1 1040 27682 19 1 2 chr6 59644563 59647839 -89869198 + IAPEz-int LTR ERVK 3210 6481 0 1 1040 3045 11 46 0 chr6 59647839 59648190 -89868847 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1040 294 73 0 0 chr6 59649018 59649059 -89867978 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 1 1040 407 263 45 58 chr6 59649074 59649282 -89867755 - RMER12B LTR ERVK -136 1436 1286 1 1040 519 45 0 0 chr6 59649282 59649348 -89867689 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1040 276 278 60 90 chr6 59649348 59649368 -89867669 - RMER12B LTR ERVK -276 1296 1276 1 1040 5054 48 2 6 chr6 59649372 59649998 -89867039 + L1Md_F2 LINE L1 5949 6571 -11 1 1040 396 346 111 28 chr6 59650222 59650475 -89866562 + RLTR12B LTR ERVK 47 320 -208 1 1040 1038 122 0 0 chr6 59650668 59650815 -89866222 + B1_Mm SINE Alu 1 147 0 1 1040 202 0 29 57 chr6 59650825 59650860 -89866177 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1040 1004 231 115 57 chr6 59651017 59651348 -89865689 + ORR1C1 LTR MaLR 29 378 0 1 1040 216 0 0 0 chr6 59652027 59652051 -89864986 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1040 1233 248 61 108 chr6 59652360 59652821 -89864216 - RMER4A LTR ERVK -27 439 1 1 1040 28 0 0 0 chr6 59652910 59652938 -89864099 + AT_rich Low_complexity Low_complexity 1 28 0 1 1040 685 257 7 0 chr6 59653694 59653830 -89863207 + ETnERV2-int LTR ERVK 7066 7202 -204 1 1040 23 68 0 0 chr6 59654125 59654169 -89862868 + AT_rich Low_complexity Low_complexity 1 44 0 1 1040 405 322 117 13 chr6 59654220 59654374 -89862663 - B3 SINE B2 0 216 47 1 1040 209 228 25 25 chr6 59655571 59655652 -89861385 + (TATAA)n Simple_repeat Simple_repeat 5 85 0 1 1040 22 0 0 0 chr6 59655722 59655744 -89861293 + AT_rich Low_complexity Low_complexity 1 22 0 1 1040 3383 117 20 11 chr6 59656997 59657533 -89859504 - L1_Mus3 LINE L1 0 6638 6098 1 1040 426 196 10 10 chr6 59657534 59657632 -89859405 + L1_Mur2 LINE L1 4874 4971 -906 1 1040 1631 134 285 1 chr6 59657654 59658106 -89858931 - L1_Mus3 LINE L1 0 6638 6035 1 1040 3400 178 35 22 chr6 59658106 59658886 -89858151 - MurERV4_19-int LTR ERVK -2241 3539 2750 1 1040 246 270 58 93 chr6 59658886 59659025 -89858012 + RLTR12B LTR ERVK 187 320 -208 1 1040 1328 233 47 41 chr6 59659321 59659661 -89857376 + ORR1C1 LTR MaLR 37 378 0 1 1040 207 69 0 0 chr6 59659727 59659756 -89857281 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1040 532 144 87 0 chr6 59659899 59660003 -89857034 - RMER4B LTR ERVK -472 113 1 1 1040 520 266 38 6 chr6 59660325 59660484 -89856553 + Lx5 LINE L1 6838 7001 -49 1 1040 33 25 0 0 chr6 59661138 59661178 -89855859 + AT_rich Low_complexity Low_complexity 1 40 0 1 1040 24 0 0 0 chr6 59661360 59661384 -89855653 + AT_rich Low_complexity Low_complexity 1 24 0 1 1040 387 0 0 0 chr6 59661731 59661774 -89855263 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1040 900 162 47 42 chr6 59661867 59661903 -89855134 - B2_Mm2 SINE B2 0 195 165 1 1040 459 0 0 0 chr6 59661903 59661954 -89855083 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1040 900 162 47 42 chr6 59661954 59662110 -89854927 - B2_Mm2 SINE B2 -31 164 2 1 1040 207 0 0 0 chr6 59662229 59662252 -89854785 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1040 399 100 0 0 chr6 59663870 59663940 -89853097 + (TAAA)n Simple_repeat Simple_repeat 1 70 0 1 1040 6310 114 6 33 chr6 59664022 59665587 -89851450 + L1_Mus2 LINE L1 5067 6566 0 1 1040 28 79 0 0 chr6 59665784 59665847 -89851190 + AT_rich Low_complexity Low_complexity 1 63 0 1 1040 20820 70 5 2 chr6 59667009 59669779 -89847258 + L1_Mm LINE L1 2833 5608 -275 1 1040 452 357 70 0 chr6 59670390 59670561 -89846476 + B4A SINE B4 48 230 -62 1 1040 189 0 0 0 chr6 59670605 59670626 -89846411 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1040 1046 8 8 0 chr6 59670627 59670750 -89846287 + (GA)n Simple_repeat Simple_repeat 2 125 0 1 1040 2323 99 115 3 chr6 59671265 59671621 -89845416 + MTA_Mm LTR MaLR 1 396 0 1 1040 1019 285 80 25 chr6 59671882 59672374 -89844663 - L1MA4A LINE L1 -399 5904 5332 1 1040 576 106 0 0 chr6 59672374 59672459 -89844578 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1040 746 291 117 30 chr6 59672459 59672504 -89844533 - L1MA4A LINE L1 -933 5370 5320 1 1040 286 380 77 10 chr6 59672752 59672959 -89844078 - Lx8 LINE L1 -244 7229 7009 2 1040 2148 139 31 0 chr6 59673236 59673596 -89843441 - L1_Mus3 LINE L1 -7 6631 6261 2 1040 3293 140 4 2 chr6 59673596 59674126 -89842911 + L1_Mm LINE L1 4578 5108 -775 2 1040 249 209 0 0 chr6 59674342 59674409 -89842628 + (TATG)n Simple_repeat Simple_repeat 2 68 0 2 1040 571 134 8 8 chr6 59674398 59674518 -89842519 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 2 1040 213 292 83 0 chr6 59674599 59674647 -89842390 - RSINE1 SINE B4 -109 56 5 2 1040 353 326 66 24 chr6 59674845 59675336 -89841701 - L1M2 LINE L1 -3930 2619 2155 2 1040 5150 272 48 19 chr6 59675530 59677471 -89839566 + Lx8 LINE L1 3796 5799 -1674 2 1040 3835 140 22 21 chr6 59677586 59677822 -89839215 + Lx3_Mus LINE L1 6332 6571 -438 2 1040 5605 134 38 24 chr6 59677822 59678767 -89838270 + RMER17B LTR ERVK 1 958 0 2 1040 3835 140 22 21 chr6 59678767 59679199 -89837838 + Lx3_Mus LINE L1 6572 7001 -8 2 1040 231 320 105 37 chr6 59680490 59680652 -89836385 + Kanga1d DNA Tc2 402 574 -35 2 1040 29 28 0 0 chr6 59681994 59682030 -89835007 + AT_rich Low_complexity Low_complexity 1 36 0 2 1040 1975 104 0 4 chr6 59682091 59682372 -89834665 + L1_Mus1 LINE L1 6287 6566 -1 2 1040 1075 321 39 59 chr6 59682886 59683273 -89833764 - MTEa LTR MaLR 0 379 1 2 1040 271 195 134 0 chr6 59683284 59683366 -89833671 - MTE-int LTR MaLR -847 733 641 2 1040 436 280 0 114 chr6 59683410 59683559 -89833478 - MTEb LTR MaLR -82 297 166 2 1040 23 0 0 0 chr6 59684179 59684202 -89832835 + AT_rich Low_complexity Low_complexity 1 23 0 2 1040 271 307 34 6 chr6 59684691 59684868 -89832169 - Lx9 LINE L1 -5 7639 7458 2 1040 350 312 0 23 chr6 59684868 59684996 -89832041 + (CATA)n Simple_repeat Simple_repeat 3 127 0 2 1040 411 233 0 38 chr6 59684997 59685180 -89831857 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 2 1040 3432 278 54 15 chr6 59685192 59686322 -89830715 - Lx9 LINE L1 -128 7516 6343 2 1040 513 251 86 21 chr6 59686461 59686648 -89830389 - L1_Rod LINE L1 -949 4898 4700 2 1040 330 26 0 0 chr6 59686715 59686754 -89830283 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1040 711 225 26 31 chr6 59686779 59687008 -89830029 - L1_Rod LINE L1 -2990 2857 2630 2 1040 4095 137 29 52 chr6 59687011 59687836 -89829201 + RLTR13D1 LTR ERVK 1 806 0 2 1040 541 257 33 37 chr6 59687865 59688254 -89828783 - L1_Rod LINE L1 -4268 1579 1165 2 1040 6027 144 41 8 chr6 59688256 59689447 -89827590 + L1_Mus4 LINE L1 5404 6626 -10 2 1040 435 300 33 0 chr6 59689857 59689977 -89827060 + B3 SINE B2 1 124 -92 2 1040 498 232 38 16 chr6 59690638 59690822 -89826215 - Lx9 LINE L1 -6 7638 7451 2 1040 929 105 78 24 chr6 59690938 59691104 -89825933 - B2_Mm2 SINE B2 -19 176 2 2 1040 1671 78 0 30 chr6 59691662 59691899 -89825138 + L1_Mus1 LINE L1 6337 6566 -1 2 1040 708 35 0 0 chr6 59691904 59691991 -89825046 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 2 1040 1368 265 34 73 chr6 59692020 59692565 -89824472 + RMER19C LTR ERVK 109 609 -2 2 1040 310 230 59 112 chr6 59692573 59692725 -89824312 - L1_Mur3 LINE L1 -610 5270 5127 2 1040 273 344 41 8 chr6 59692723 59692846 -89824191 + Lx8 LINE L1 7212 7338 -135 2 1040 964 181 96 74 chr6 59693207 59693530 -89823507 + Lx9 LINE L1 7311 7640 -4 2 1040 22 56 0 0 chr6 59693530 59693566 -89823471 + AT_rich Low_complexity Low_complexity 1 36 0 2 1040 263 249 15 1 chr6 59694672 59694755 -89822282 + L1_Rod LINE L1 3662 3769 -2371 2 1040 1692 170 17 64 chr6 59694805 59695150 -89821887 - ORR1A4 LTR MaLR 0 329 1 2 1040 182 105 26 0 chr6 59695176 59695214 -89821823 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1040 262 326 125 0 chr6 59695406 59695550 -89821487 + L1_Mur3 LINE L1 3808 3969 -1911 2 1040 630 74 0 0 chr6 59696251 59696332 -89820705 - L1_Mus3 LINE L1 -451 6187 6107 2 1040 1749 136 20 14 chr6 59696283 59696575 -89820462 + L1_Mus3 LINE L1 6140 6433 -205 2 1040 10793 157 27 68 chr6 59696571 59698408 -89818629 + L1VL4 LINE L1 893 2741 -1173 2 1040 1130 142 23 0 chr6 59698408 59698584 -89818453 + B2_Mm1t SINE B2 2 181 -12 2 1040 10793 162 26 88 chr6 59698584 59698596 -89818441 + L1VL4 LINE L1 2742 2753 -3133 2 1040 1112 144 11 0 chr6 59698596 59698777 -89818260 + B2_Mm1t SINE B2 7 189 -4 2 1040 10793 162 26 88 chr6 59698777 59699079 -89817958 + L1VL4 LINE L1 2754 3058 -2828 2 1040 243 0 0 0 chr6 59699079 59699106 -89817931 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1040 10793 167 28 69 chr6 59699106 59699821 -89817216 + L1VL4 LINE L1 3054 3789 -2097 2 1040 1967 74 0 0 chr6 59699831 59700087 -89816950 + L1Md_F2 LINE L1 6070 6325 -257 2 1040 33 25 0 0 chr6 59700156 59700196 -89816841 + AT_rich Low_complexity Low_complexity 1 40 0 2 1040 3969 67 6 0 chr6 59700196 59700717 -89816320 + L1Md_F2 LINE L1 5063 5586 -297 2 1040 7464 64 19 4 chr6 59700717 59701690 -89815347 + L1Md_F2 LINE L1 5587 6574 -8 2 1040 25 51 0 0 chr6 59701693 59701732 -89815305 + AT_rich Low_complexity Low_complexity 1 39 0 2 1040 924 101 7 7 chr6 59701880 59702020 -89815017 - B1_Mus2 SINE Alu -1 146 7 2 1040 526 240 19 39 chr6 59702020 59702036 -89815001 - ID_B1 SINE B4 -2 222 70 2 1040 182 37 37 0 chr6 59703385 59703412 -89813625 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1040 20053 123 39 6 chr6 59703808 59707682 -89809355 - L1_Mus2 LINE L1 0 6566 2539 2 1040 1863 148 90 46 chr6 59707682 59708137 -89808900 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1040 20053 130 50 7 chr6 59708137 59708371 -89808666 - L1_Mus2 LINE L1 -3345 2538 2311 2 1040 1630 140 26 7 chr6 59708362 59708671 -89808366 - MusHAL1 LINE L1 -2208 504 190 2 1040 1094 102 0 0 chr6 59708694 59708841 -89808196 + B1_Mus1 SINE Alu 2 148 0 2 1040 414 0 0 0 chr6 59708841 59708887 -89808150 + (A)n Simple_repeat Simple_repeat 1 46 0 2 1040 1357 221 38 0 chr6 59708894 59709233 -89807804 - L1_Mus2 LINE L1 -5540 1076 725 2 1040 511 228 16 8 chr6 59709241 59709369 -89807668 - L1_Mus2 LINE L1 -5813 803 675 2 1040 265 111 0 100 chr6 59709383 59709433 -89807604 - L1VL1 LINE L1 -6317 105 61 2 1040 479 283 193 6 chr6 59710350 59710531 -89806506 + B3 SINE B2 2 216 0 2 1040 22 0 0 0 chr6 59710637 59710659 -89806378 + AT_rich Low_complexity Low_complexity 1 22 0 2 1040 46 78 0 0 chr6 59710979 59711081 -89805956 + AT_rich Low_complexity Low_complexity 1 102 0 2 1040 1452 232 113 26 chr6 59711240 59711621 -89805416 + MTC LTR MaLR 1 414 -7 2 1040 275 26 0 49 chr6 59712693 59712734 -89804303 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1040 30 59 0 0 chr6 59712874 59712925 -89804112 + AT_rich Low_complexity Low_complexity 1 51 0 2 1040 1460 273 46 41 chr6 59712938 59713377 -89803660 + L1VL4 LINE L1 4 444 -5858 2 1040 6897 205 163 12 chr6 59713375 59714588 -89802449 + MusHAL1 LINE L1 1177 2694 -3189 2 1040 456 19 0 0 chr6 59714588 59714641 -89802396 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1040 6897 215 177 13 chr6 59714641 59715709 -89801328 + MusHAL1 LINE L1 2695 3834 -2049 2 1040 491 129 90 49 chr6 59715960 59716082 -89800955 - L1Md_F2 LINE L1 -7 6575 6449 2 1040 2132 74 3 0 chr6 59716071 59716355 -89800682 + L1_Mm LINE L1 4819 5103 -780 2 1040 1184 204 25 0 chr6 59716352 59716631 -89800406 + L1_Mur2 LINE L1 3815 4100 -1777 2 1040 194 98 0 47 chr6 59716918 59716961 -89800076 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 2 1040 263 325 85 10 chr6 59717717 59717916 -89799121 + Lx8 LINE L1 6455 6668 -805 2 1040 1861 167 76 13 chr6 59718958 59719352 -89797685 - BGLII_Mus LTR ERVK 0 422 4 2 1040 1544 243 6 9 chr6 59719436 59719777 -89797260 + ORR1B1 LTR MaLR 1 340 -54 2 1040 5563 234 57 91 chr6 59719822 59720164 -89796873 + ORR1B1-int LTR MaLR 31 384 -1579 2 1040 228 67 0 0 chr6 59720164 59720194 -89796843 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2 1040 1051 88 0 0 chr6 59720196 59720332 -89796705 - B1_Mus1 SINE Alu -12 136 1 2 1040 5563 234 57 91 chr6 59720332 59721685 -89795352 + ORR1B1-int LTR MaLR 385 1706 -257 2 1040 597 64 0 0 chr6 59721685 59721763 -89795274 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1040 5563 234 57 91 chr6 59721763 59722021 -89795016 + ORR1B1-int LTR MaLR 1707 1921 -42 2 1040 325 320 48 19 chr6 59722013 59722028 -89795009 + B1_Mus2 SINE Alu 5 19 -128 2 1040 1022 246 49 83 chr6 59722028 59722436 -89794601 + ORR1B1 LTR MaLR 1 394 0 2 1040 325 320 48 19 chr6 59722436 59722525 -89794512 + B1_Mus2 SINE Alu 20 112 -35 2 1040 543 209 13 7 chr6 59722456 59722610 -89794427 + ORR1A3-int LTR MaLR 767 921 -1042 2 1040 408 167 32 3 chr6 59722625 59722706 -89794331 + ORR1A3-int LTR MaLR 1315 1376 -587 2 1040 226 313 0 0 chr6 59723016 59723083 -89793954 + (TCTG)n Simple_repeat Simple_repeat 4 70 0 2 1040 360 0 0 0 chr6 59723156 59723196 -89793841 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1040 180 0 0 0 chr6 59723196 59723215 -89793822 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1040 24 0 0 0 chr6 59723245 59723269 -89793768 + AT_rich Low_complexity Low_complexity 1 24 0 2 1040 402 21 0 0 chr6 59723388 59723435 -89793602 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1040 449 294 10 74 chr6 59723447 59723649 -89793388 - Lx9 LINE L1 -311 7333 7145 2 1040 694 349 31 37 chr6 59723704 59724058 -89792979 - Lx9 LINE L1 -934 6710 6359 2 1040 4910 154 27 57 chr6 59725212 59726170 -89790867 - Lx3A LINE L1 -318 6663 5735 2 1040 1620 181 26 3 chr6 59726170 59726475 -89790562 + Lx3A LINE L1 6668 6979 -2 2 1040 685 245 36 41 chr6 59726549 59726745 -89790292 + ORR1C2 LTR MaLR 1 195 -189 2 1040 269 169 0 25 chr6 59726753 59726832 -89790205 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 2 1040 454 246 47 2 chr6 59726936 59727080 -89789957 - Lx3C LINE L1 -913 6096 5942 2 1040 2783 122 29 7 chr6 59727081 59727526 -89789511 - RLTR13D2 LTR ERVK -568 455 1 2 1040 1551 188 84 32 chr6 59727537 59727943 -89789094 - Lx3C LINE L1 -1041 5935 5512 2 1040 1425 199 42 83 chr6 59727987 59728566 -89788471 - MYSERV6-int LTR ERVK -600 8359 7892 2 1040 312 293 87 73 chr6 59728578 59728787 -89788250 - RMER4A LTR ERVK -32 553 229 2 1040 2847 238 37 74 chr6 59728854 59729725 -89787312 + RLTR21 LTR ERVK 128 979 -593 2 1040 1062 90 7 0 chr6 59729725 59729870 -89787167 + B1_Mus1 SINE Alu 1 146 -2 2 1040 2847 238 37 74 chr6 59729870 59729961 -89787076 + RLTR21 LTR ERVK 980 1055 -517 2 1040 1403 61 17 0 chr6 59729966 59730147 -89786890 - L1_Mus1 LINE L1 -673 5894 5711 2 1040 3924 194 7 24 chr6 59731153 59732144 -89784893 + Lx LINE L1 4984 5971 -683 2 1040 297 51 0 0 chr6 59732144 59732183 -89784854 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1040 2847 152 6 45 chr6 59732183 59732329 -89784708 + Lx LINE L1 5972 6096 -558 2 1040 4354 14 4 0 chr6 59732329 59732820 -89784217 + MT2_Mm LTR ERVL 1 493 0 2 1040 40479 16 14 0 chr6 59732820 59738107 -89778930 + MERVL-int LTR ERVL 1 5360 -125 2 1040 392 167 46 35 chr6 59738107 59738194 -89778843 + ORR1A3-int LTR MaLR 553 640 -1323 2 1040 314 0 0 0 chr6 59738194 59738232 -89778805 + MERVL-int LTR ERVL 5448 5485 0 2 1040 4354 14 4 0 chr6 59738232 59738723 -89778314 + MT2_Mm LTR ERVL 1 493 0 2 1040 2752 182 44 24 chr6 59738723 59739270 -89777767 + Lx LINE L1 6092 6649 -5 2 1040 31 82 0 0 chr6 59739634 59739707 -89777330 + AT_rich Low_complexity Low_complexity 1 73 0 2 1040 33 43 0 0 chr6 59739744 59739791 -89777246 + AT_rich Low_complexity Low_complexity 1 47 0 3 1040 7312 81 13 6 chr6 59740298 59741557 -89775480 - L1Md_F2 LINE L1 0 6582 5309 3 1040 447 52 0 0 chr6 59741846 59741904 -89775133 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1040 298 235 98 51 chr6 59743297 59743414 -89773623 + B3 SINE B2 87 216 0 3 1040 28 48 0 0 chr6 59745142 59745184 -89771853 + AT_rich Low_complexity Low_complexity 1 42 0 3 1040 284 148 18 21 chr6 59745342 59745399 -89771638 + MTD LTR MaLR 2 56 -363 3 1040 418 317 107 34 chr6 59745916 59746235 -89770802 + MTD LTR MaLR 53 377 -2 3 1040 591 188 0 0 chr6 59746254 59746371 -89770666 + (TA)n Simple_repeat Simple_repeat 2 118 0 3 1040 21 0 0 0 chr6 59746405 59746426 -89770611 + AT_rich Low_complexity Low_complexity 1 21 0 3 1040 534 339 89 44 chr6 59746942 59747303 -89769734 + MTEa LTR MaLR 1 377 -2 3 1040 1111 326 82 36 chr6 59747488 59748048 -89768989 - Lx8 LINE L1 -631 6842 6257 3 1040 464 229 32 13 chr6 59748243 59748398 -89768639 + L1_Mur2 LINE L1 4136 4293 -1584 3 1040 2489 67 48 0 chr6 59748398 59748728 -89768309 + ORR1A0 LTR MaLR 1 346 0 3 1040 13422 67 6 2 chr6 59748728 59750514 -89766523 + ORR1A0-int LTR MaLR 1 1792 0 3 1040 2602 59 3 0 chr6 59750514 59750851 -89766186 + ORR1A0 LTR MaLR 1 338 -8 3 1040 4784 197 10 19 chr6 59750853 59751923 -89765114 + L1_Mur2 LINE L1 4287 5347 -530 3 1040 951 234 69 9 chr6 59751922 59752155 -89764882 + Lx LINE L1 6407 6653 -1 3 1040 349 364 54 20 chr6 59752687 59752984 -89764053 + Kanga1c DNA Tc2 8 314 -415 3 1040 252 366 45 85 chr6 59754483 59754707 -89762330 - MTEb LTR MaLR 0 379 165 3 1040 25 0 0 0 chr6 59754719 59754744 -89762293 + AT_rich Low_complexity Low_complexity 1 25 0 3 1040 321 47 0 0 chr6 59755305 59755348 -89761689 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1040 25 0 0 0 chr6 59755960 59755985 -89761052 + AT_rich Low_complexity Low_complexity 1 25 0 3 1040 451 264 18 137 chr6 59756129 59756348 -89760689 + B3A SINE B2 2 194 -1 3 1040 21 57 0 0 chr6 59756365 59756400 -89760637 + AT_rich Low_complexity Low_complexity 1 35 0 3 1040 379 208 26 0 chr6 59756804 59756881 -89760156 - B3 SINE B2 -136 80 2 3 1040 300 186 0 0 chr6 59757586 59757645 -89759392 + CT-rich Low_complexity Low_complexity 3 61 0 3 1040 986 157 0 0 chr6 59758071 59758218 -89758819 + B1_Mus1 SINE Alu 2 148 0 3 1040 260 53 0 26 chr6 59758832 59758871 -89758166 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1040 324 230 43 14 chr6 59758931 59759072 -89757965 + (TA)n Simple_repeat Simple_repeat 2 146 0 3 1040 551 288 0 0 chr6 59759764 59759889 -89757148 + B3 SINE B2 1 125 -91 3 1040 580 209 16 21 chr6 59760552 59760681 -89756356 - Lx9 LINE L1 -2 7642 7514 3 1040 3062 179 115 103 chr6 59760681 59761076 -89755961 + RMER17A2 LTR ERVK 1 445 -461 3 1040 548 29 14 0 chr6 59761076 59761146 -89755891 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1040 3062 179 115 103 chr6 59761146 59761645 -89755392 + RMER17A2 LTR ERVK 446 905 -1 3 1040 580 209 16 21 chr6 59761645 59761706 -89755331 - Lx9 LINE L1 -131 7513 7453 3 1040 963 187 0 6 chr6 59761823 59761995 -89755042 - B2_Mm2 SINE B2 -23 172 2 3 1040 441 0 0 0 chr6 59762198 59762247 -89754790 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1040 525 110 0 0 chr6 59762571 59762662 -89754375 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 1040 1182 256 60 99 chr6 59762794 59763315 -89753722 + RMER19C LTR ERVK 176 735 -2 3 1040 258 360 36 9 chr6 59763700 59763812 -89753225 + B4A SINE B4 4 118 -174 3 1040 23 54 0 0 chr6 59763812 59763849 -89753188 + AT_rich Low_complexity Low_complexity 1 37 0 3 1040 1491 122 39 4 chr6 59764478 59764732 -89752305 - L1_Mus3 LINE L1 -1 6637 6375 3 1040 1290 147 4 47 chr6 59764732 59764967 -89752070 + L1_Mus3 LINE L1 5998 6222 -416 3 1040 3142 129 0 0 chr6 59764990 59765455 -89751582 - L1_Mus1 LINE L1 -1 6566 6102 3 1040 1287 137 0 10 chr6 59765457 59765664 -89751373 + L1_Mus1 LINE L1 5878 6082 -484 3 1040 223 152 43 0 chr6 59766040 59766086 -89750951 + A-rich Low_complexity Low_complexity 3 50 0 3 1040 677 156 7 47 chr6 59766317 59766465 -89750572 - L1_Mus1 LINE L1 0 6582 6441 3 1040 1195 72 0 0 chr6 59766465 59766618 -89750419 + L1Md_F2 LINE L1 5434 5586 -297 3 1040 7581 66 2 7 chr6 59766619 59767617 -89749420 + L1Md_F2 LINE L1 5588 6580 -2 3 16 8942 121 16 12 chr6 59767617 59769628 -89747409 - L1_Mus1 LINE L1 -137 6430 4427 3 1041 6124 98 1 15 chr6 59769630 59770520 -89746517 - L1Md_F2 LINE L1 -14 6568 5691 3 1041 13306 103 1 1 chr6 59770520 59772458 -89744579 + L1Md_F2 LINE L1 3713 5650 -233 3 1041 16918 137 9 1 chr6 59772452 59775277 -89741760 - L1_Mus1 LINE L1 -1440 4443 1596 3 1041 30209 55 5 13 chr6 59775277 59781288 -89735749 - L1Md_F2 LINE L1 -2 6580 615 3 1041 2482 157 88 3 chr6 59781287 59782416 -89734621 - L1_Mus1 LINE L1 -4274 1609 387 3 1041 1501 167 24 17 chr6 59782429 59782716 -89734321 - ORR1A4 LTR MaLR -2 327 39 3 1041 433 262 171 51 chr6 59782918 59783175 -89733862 + Lx8 LINE L1 7182 7469 -4 3 1041 239 308 8 24 chr6 59783903 59784026 -89733011 + L1MC LINE L1 5678 5798 -2084 3 1041 624 83 0 0 chr6 59784393 59784489 -89732548 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 1041 330 26 0 0 chr6 59784493 59784532 -89732505 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1041 4133 161 22 25 chr6 59784567 59785378 -89731659 + RMER17D2 LTR ERVK 1 809 0 3 1041 2717 82 5 3 chr6 59785513 59785882 -89731155 - Lx3_Mus LINE L1 -247 6762 6393 3 1041 9711 204 7 31 chr6 59785892 59786347 -89730690 + Lx2 LINE L1 2937 3375 -2511 3 1041 648 0 0 0 chr6 59786347 59786419 -89730618 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 3 1041 9711 204 7 31 chr6 59786419 59788248 -89728789 + Lx2 LINE L1 3376 5167 -719 3 1041 3416 187 40 3 chr6 59788246 59788916 -89728121 + Lx2 LINE L1 5579 6246 -751 3 1041 1367 219 19 137 chr6 59788916 59789072 -89727965 + RLTR21 LTR ERVK 117 260 -1312 3 1041 1062 99 0 0 chr6 59789072 59789214 -89727823 + B1_Mus1 SINE Alu 2 143 -5 3 1041 1367 219 19 137 chr6 59789214 59789360 -89727677 + RLTR21 LTR ERVK 261 403 -1169 3 1041 609 27 0 0 chr6 59789360 59789435 -89727602 + (TAG)n Simple_repeat Simple_repeat 2 76 0 3 1041 1367 219 19 137 chr6 59789435 59789554 -89727483 + RLTR21 LTR ERVK 404 489 -1083 3 1041 1646 184 25 15 chr6 59789568 59789894 -89727143 - ORR1A4 LTR MaLR 0 329 1 3 1041 2981 243 17 72 chr6 59789898 59790732 -89726305 - ORR1A4-int LTR MaLR -4 1959 1172 3 1041 396 143 0 0 chr6 59790739 59790809 -89726228 + (CATA)n Simple_repeat Simple_repeat 2 71 0 3 1041 758 256 161 45 chr6 59790819 59791146 -89725891 + RLTR12B LTR ERVK 11 341 -186 3 1041 2125 122 8 63 chr6 59791503 59791881 -89725156 - L1_Mus2 LINE L1 0 6566 6210 3 1041 7449 156 19 7 chr6 59791881 59793701 -89723336 - L1VL4 LINE L1 -1387 2430 578 3 1041 1457 280 48 44 chr6 59793791 59794292 -89722745 - RMER19C LTR ERVK -2 609 107 3 1041 909 99 0 14 chr6 59794439 59794582 -89722455 + L1Md_F2 LINE L1 6430 6570 -12 3 1041 2929 177 27 67 chr6 59794587 59795259 -89721778 + RMER17D2 LTR ERVK 165 809 0 3 1041 1701 218 84 6 chr6 59795261 59795704 -89721333 - Lx2B LINE L1 -962 6038 5587 3 1041 377 241 28 0 chr6 59795704 59795812 -89721225 - Lx2B LINE L1 -484 5393 5283 3 1041 5936 94 53 0 chr6 59795816 59796664 -89720373 - L1_Mus1 LINE L1 0 6567 5675 3 1041 458 144 33 0 chr6 59796657 59796747 -89720290 + L1_Mm LINE L1 3231 3323 -2560 3 1041 396 312 137 79 chr6 59796843 59797121 -89719916 + RLTR12B LTR ERVK 18 311 -217 3 1041 432 37 0 0 chr6 59797430 59797484 -89719553 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1041 1099 270 43 54 chr6 59797485 59797834 -89719203 + ORR1C1 LTR MaLR 34 378 0 3 1041 3075 190 29 9 chr6 59797876 59798541 -89718496 - Lx2B LINE L1 -1783 4094 3417 3 1041 879 149 43 0 chr6 59798544 59798685 -89718352 + Lx2 LINE L1 6497 6643 -354 3 1041 1136 182 5 9 chr6 59798685 59798907 -89718130 + Lx2 LINE L1 6775 6995 -2 3 1041 207 0 0 0 chr6 59798951 59798974 -89718063 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1041 1077 265 181 42 chr6 59799300 59799814 -89717223 - RMER4A LTR ERVK 0 585 1 3 1041 24 53 0 0 chr6 59799903 59799941 -89717096 + AT_rich Low_complexity Low_complexity 1 38 0 3 1041 441 0 0 0 chr6 59800972 59801021 -89716016 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1041 23 33 0 0 chr6 59801253 59801283 -89715754 + AT_rich Low_complexity Low_complexity 1 30 0 3 1041 423 0 0 0 chr6 59801381 59801428 -89715609 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1041 24 53 0 0 chr6 59801578 59801616 -89715421 + AT_rich Low_complexity Low_complexity 1 38 0 3 1041 183 42 0 0 chr6 59802942 59802966 -89714071 + (CAAAT)n Simple_repeat Simple_repeat 2 25 0 3 1041 261 0 0 0 chr6 59802967 59802996 -89714041 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 1041 212 205 52 35 chr6 59803230 59803346 -89713691 + (TATAA)n Simple_repeat Simple_repeat 4 121 0 3 1041 2710 57 3 0 chr6 59803439 59803770 -89713267 + IAPEY3_LTR LTR ERVK 1 332 0 3 1041 55491 75 19 1 chr6 59803770 59811317 -89705720 + IAPEY3-int LTR ERVK 1 7680 0 3 1041 2670 70 3 0 chr6 59811317 59811648 -89705389 + IAPEY3_LTR LTR ERVK 1 332 0 3 1041 336 291 50 33 chr6 59812938 59813129 -89703908 - RLTR21 LTR ERVK -135 1437 1286 3 1041 216 111 0 0 chr6 59813147 59813183 -89703854 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1041 3452 231 49 66 chr6 59813221 59814294 -89702743 - RLTR21 LTR ERVK -517 1055 1 3 1041 906 144 0 7 chr6 59814559 59814706 -89702331 + B1_Mus1 SINE Alu 3 148 0 3 1041 261 57 0 0 chr6 59814722 59814757 -89702280 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1041 1056 57 7 14 chr6 59815621 59815763 -89701274 + B1_Mm SINE Alu 1 141 -6 3 1041 567 0 0 0 chr6 59815765 59815828 -89701209 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 3 1041 201 26 51 26 chr6 59816424 59816463 -89700574 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 1041 1273 240 64 16 chr6 59816468 59816897 -89700140 + MYSERV6-int LTR ERVK 8528 8880 -79 3 1041 432 339 90 49 chr6 59816925 59817170 -89699867 + RLTR12B LTR ERVK 47 301 -227 3 1041 1064 208 124 67 chr6 59817513 59817843 -89699194 + ORR1C1 LTR MaLR 30 378 0 3 1041 227 0 93 0 chr6 59817914 59817957 -89699080 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 3 1041 187 68 43 43 chr6 59818549 59818595 -89698442 + A-rich Low_complexity Low_complexity 3 48 0 3 1041 183 114 0 0 chr6 59818636 59818671 -89698366 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1041 714 62 0 0 chr6 59818983 59819079 -89697958 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 1041 2274 104 9 0 chr6 59819124 59819450 -89697587 - L1_Mus1 LINE L1 -331 6236 5908 3 1041 2138 94 25 0 chr6 59819450 59819769 -89697268 + L1_Mus1 LINE L1 6238 6564 -3 3 1041 967 257 42 55 chr6 59819779 59820088 -89696949 - RMER4B LTR ERVK -280 305 1 3 1041 252 111 0 0 chr6 59821145 59821190 -89695847 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1041 7942 57 1 0 chr6 59821673 59822822 -89694215 - L1Md_F2 LINE L1 -4 6578 5429 3 1041 428 167 0 0 chr6 59822819 59822891 -89694146 + L1Md_Gf LINE L1 266 337 -6282 3 1041 3855 91 20 3 chr6 59822884 59823961 -89693076 + L1Md_Gf LINE L1 563 1756 -4130 3 1041 28 86 0 0 chr6 59825348 59825418 -89691619 + AT_rich Low_complexity Low_complexity 1 70 0 3 1041 284 250 18 18 chr6 59825430 59825544 -89691493 + Lx9 LINE L1 7523 7636 -8 3 1041 4420 14 0 0 chr6 59825581 59826074 -89690963 - MT2_Mm LTR ERVL 0 493 1 4 1041 719 229 37 11 chr6 59827241 59827431 -89689606 - L1_Mus4 LINE L1 0 6636 6442 4 1041 312 325 29 50 chr6 59827813 59828027 -89689010 - RLTR21 LTR ERVK -141 1431 1285 4 1041 432 0 0 0 chr6 59828027 59828075 -89688962 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1041 498 17 0 0 chr6 59828075 59828133 -89688904 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1041 3626 256 42 38 chr6 59828133 59828623 -89688414 - RLTR21 LTR ERVK -478 1094 593 4 1041 405 0 0 0 chr6 59828623 59828668 -89688369 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1041 3626 256 42 38 chr6 59828668 59829265 -89687772 - RLTR21 LTR ERVK -980 592 3 4 1041 368 111 16 0 chr6 59829380 59829443 -89687594 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1041 297 0 0 0 chr6 59829512 59829545 -89687492 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1041 207 100 0 0 chr6 59829545 59829574 -89687463 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1041 566 264 85 157 chr6 59829940 59830412 -89686625 + RLTR12B LTR ERVK 48 485 -43 4 1041 809 145 30 0 chr6 59830507 59830638 -89686399 + B1_Mm SINE Alu 13 147 0 4 1041 534 330 9 18 chr6 59831016 59831057 -89685980 - Lx8 LINE L1 -1650 5823 5782 4 1041 3010 140 24 46 chr6 59831057 59831597 -89685440 - L1_Mus2 LINE L1 0 6566 6039 4 1041 3339 145 26 12 chr6 59831597 59832178 -89684859 - L1_Mm LINE L1 -98 5785 5197 4 1041 911 180 23 65 chr6 59832176 59832390 -89684647 + L1_Mm LINE L1 5069 5273 -610 4 1041 2165 232 44 2 chr6 59832384 59832932 -89684105 - L1_Mur2 LINE L1 -1007 4870 4300 4 1041 1178 204 48 0 chr6 59832932 59833162 -89683875 - Lx3C LINE L1 -557 6416 6176 4 1041 1946 127 254 31 chr6 59833162 59833610 -89683427 - RLTR6_Mm LTR ERV1 -70 584 37 4 1041 285 208 200 38 chr6 59833612 59833717 -89683320 - RLTR6_Mm LTR ERV1 -532 122 1 4 1041 65182 38 14 0 chr6 59833717 59841404 -89675633 - RLTR6-int LTR ERV1 0 7778 2 4 1041 1941 130 251 33 chr6 59841404 59841858 -89675179 - RLTR6_Mm LTR ERV1 -65 589 37 4 1041 285 208 200 38 chr6 59841860 59841965 -89675072 - RLTR6_Mm LTR ERV1 -532 122 1 4 1041 2876 170 22 5 chr6 59841980 59842668 -89674369 - Lx3C LINE L1 -805 6171 5474 4 1041 298 229 16 0 chr6 59842668 59842729 -89674308 + MYSERV-int LTR ERVK 4975 5036 -1514 4 1041 662 284 31 44 chr6 59842846 59843163 -89673874 + MYSERV-int LTR ERVK 5173 5485 -1065 4 1041 3397 107 15 64 chr6 59843163 59843681 -89673356 + MT2_Mm LTR ERVL 1 493 0 4 1041 7120 79 6 25 chr6 59843681 59844655 -89672382 + MERVL-int LTR ERVL 1 956 -4529 4 1041 25395 71 0 0 chr6 59844657 59847803 -89669234 + MERVL-int LTR ERVL 2096 5241 -244 4 1041 566 143 282 32 chr6 59847786 59847974 -89669063 + MERVL-int LTR ERVL 5395 5629 -132 4 1041 287 127 15 60 chr6 59847974 59848041 -89668996 + ORR1A3-int LTR MaLR 567 630 -1333 4 1041 380 43 0 0 chr6 59848041 59848088 -89668949 + MERVL-int LTR ERVL 5439 5485 0 4 1041 1919 119 45 85 chr6 59848088 59848748 -89668289 + MT2C_Mm LTR ERVL 1 584 0 4 1041 841 226 64 75 chr6 59848748 59849121 -89667916 + MYSERV6-int LTR ERVK 7945 8313 -646 4 1041 1816 209 67 5 chr6 59849127 59849559 -89667478 - Lx3C LINE L1 -1261 4616 4158 4 1041 791 215 12 6 chr6 59849557 59849730 -89667307 + Lx3C LINE L1 4010 4183 -1694 4 1041 2669 131 63 50 chr6 59849781 59850257 -89666780 + RLTR45 LTR ERVK 1 482 0 4 1041 6558 184 34 3 chr6 59850448 59851288 -89665749 - MurERV4_19-int LTR ERVK -560 5220 4359 4 1041 348 103 0 0 chr6 59851288 59851346 -89665691 + (TTA)n Simple_repeat Simple_repeat 2 59 0 4 1041 6558 184 34 3 chr6 59851346 59851854 -89665183 - MurERV4_19-int LTR ERVK -1422 4358 3832 4 1041 2251 202 119 4 chr6 59851856 59852353 -89664684 - Lx LINE L1 -3 6651 6098 4 1041 2787 175 33 4 chr6 59852354 59852894 -89664143 - MurERV4_19-int LTR ERVK -1946 3834 3279 4 1041 3357 217 31 3 chr6 59852885 59853629 -89663408 - MurERV4_19-int LTR ERVK -3335 2445 1681 4 1041 3693 231 11 16 chr6 59853632 59854502 -89662535 - MurERV4_19-int LTR ERVK -4230 1550 685 4 1041 4309 167 54 6 chr6 59854513 59854934 -89662103 - RMER17D LTR ERVK -2 887 466 4 1041 873 71 53 0 chr6 59854934 59855103 -89661934 + (GA)n Simple_repeat Simple_repeat 2 179 0 4 1041 4309 167 54 6 chr6 59855103 59855501 -89661536 - RMER17D LTR ERVK -424 465 30 4 1041 5882 136 35 39 chr6 59855504 59856588 -89660449 - RMER17A-int LTR ERVK -91 1637 226 4 1041 2134 124 30 93 chr6 59856605 59857142 -89659895 - RMER17D LTR ERVK -375 514 1 4 1041 1479 262 38 35 chr6 59857144 59857568 -89659469 - MurERV4_19-int LTR ERVK -5101 679 255 4 1041 1100 78 7 7 chr6 59857598 59857753 -89659284 - L1Md_F2 LINE L1 0 6582 6428 4 1041 418 275 14 14 chr6 59857753 59857897 -89659140 + L1_Mm LINE L1 5525 5668 -215 4 1041 7988 54 7 1 chr6 59857895 59858885 -89658152 - L1Md_F2 LINE L1 0 6582 5587 4 1041 2978 78 8 33 chr6 59858901 59859299 -89657738 - RLTR10 LTR ERVK -2 388 1 4 1041 8200 50 5 2 chr6 59859299 59860293 -89656744 - RLTR10-int LTR ERVK -1 1986 990 4 1041 444 340 30 30 chr6 59860375 59860769 -89656268 - RLTR10-int LTR ERVK -5987 1594 1201 4 1041 6850 68 63 2 chr6 59860814 59861718 -89655319 - RLTR10-int LTR ERVK -988 999 41 4 1041 2753 78 4 157 chr6 59861730 59862188 -89654849 - RLTR10 LTR ERVK -2 388 1 4 1041 15166 82 1 1 chr6 59862189 59864215 -89652822 - L1Md_F LINE L1 -305 5578 3554 4 1041 7542 100 2 9 chr6 59864213 59866167 -89650870 - L1Md_F LINE L1 -3587 2296 356 4 1041 933 104 49 0 chr6 59866167 59866311 -89650726 - L1_Mus3 LINE L1 -14 6624 6474 4 1041 2659 164 5 0 chr6 59866312 59866758 -89650279 + L1_Mus3 LINE L1 6019 6466 -172 4 1041 595 266 51 14 chr6 59866779 59866996 -89650041 - MurERV4_19-int LTR ERVK -5554 226 2 4 1041 1253 281 159 30 chr6 59866997 59867499 -89649538 - RMER19B LTR ERVK 0 902 336 4 1041 2774 138 19 17 chr6 59867976 59868482 -89648555 + Lx LINE L1 5393 5905 -749 4 1041 1168 178 36 22 chr6 59868482 59868706 -89648331 + L1_Mus3 LINE L1 6396 6622 -16 4 1041 2175 119 14 26 chr6 59868706 59868740 -89648297 + Lx LINE L1 5906 5941 -713 4 1041 27463 147 15 38 chr6 59869166 59872794 -89644243 + L1_Mus2 LINE L1 695 4294 -1589 4 1041 1167 110 0 0 chr6 59872794 59872940 -89644097 - B1_Mus2 SINE Alu 0 147 2 4 1041 27463 128 12 24 chr6 59872940 59875346 -89641691 + L1_Mus2 LINE L1 4295 6566 0 4 1041 259 260 54 23 chr6 59875368 59875498 -89641539 + MYSERV-int LTR ERVK 6408 6541 -9 4 1041 333 322 74 59 chr6 59875532 59875803 -89641234 + RLTR12B LTR ERVK 48 322 -206 4 1041 6974 127 12 14 chr6 59876082 59877487 -89639550 + L1_Mus3 LINE L1 5251 6638 0 4 1041 276 77 0 0 chr6 59877501 59877540 -89639497 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1041 579 85 0 0 chr6 59877540 59877621 -89639416 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1041 4003 145 118 11 chr6 59877805 59878145 -89638892 - RMER17D2 LTR ERVK 0 809 458 4 1041 990 112 0 0 chr6 59878145 59878323 -89638714 + (GA)n Simple_repeat Simple_repeat 1 178 0 4 1041 4003 145 118 11 chr6 59878323 59878713 -89638324 - RMER17D2 LTR ERVK -352 457 1 4 1041 361 316 328 33 chr6 59878771 59879046 -89637991 + MLT1F1 LTR MaLR 95 450 -119 4 1041 1082 275 38 15 chr6 59880127 59880470 -89636567 + ORR1C1 LTR MaLR 28 378 0 4 1041 16662 69 0 1 chr6 59880523 59883344 -89633693 - L1Md_F2 LINE L1 0 6582 3764 4 1041 3667 90 19 0 chr6 59883790 59884256 -89632781 + MT2C_Mm LTR ERVL 1 475 0 4 1041 1477 224 153 47 chr6 59884309 59884838 -89632199 - RMER4B LTR ERVK 0 585 1 4 1041 30 0 0 0 chr6 59884935 59884965 -89632072 + AT_rich Low_complexity Low_complexity 1 30 0 4 1041 21 71 0 0 chr6 59887655 59887697 -89629340 + AT_rich Low_complexity Low_complexity 1 42 0 4 1041 221 177 63 16 chr6 59887698 59887761 -89629276 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 4 1041 795 75 0 0 chr6 59888104 59888211 -89628826 + (TTTTC)n Simple_repeat Simple_repeat 2 108 0 4 1041 1909 89 19 19 chr6 59888231 59888495 -89628542 - L1_Mus2 LINE L1 0 6566 6303 4 1041 419 258 99 75 chr6 59889602 59889814 -89627223 - RLTR21 LTR ERVK -136 1436 1232 4 1041 1543 208 33 39 chr6 59889788 59890248 -89626789 - RLTR21 LTR ERVK -458 1114 658 4 1041 1673 68 0 0 chr6 59890248 59890469 -89626568 - L1_Mus1 LINE L1 0 6567 6347 4 1041 1956 122 6 13 chr6 59890469 59890785 -89626252 + L1_Mm LINE L1 4958 5271 -612 4 1041 2537 266 12 41 chr6 59890786 59891473 -89625564 - RLTR21 LTR ERVK -905 667 1 4 1041 465 122 34 17 chr6 59891722 59891839 -89625198 + (TA)n Simple_repeat Simple_repeat 1 119 0 4 1041 387 306 79 42 chr6 59892081 59892296 -89624741 + RLTR12B LTR ERVK 3 225 -303 4 1041 408 281 15 38 chr6 59892810 59892827 -89624210 + B4 SINE B4 69 82 -210 4 1041 784 80 0 66 chr6 59892827 59892948 -89624089 + B1_Mus1 SINE Alu 1 113 -35 4 1041 342 0 0 0 chr6 59892948 59892986 -89624051 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1041 223 170 43 43 chr6 59893435 59893527 -89623510 + (TA)n Simple_repeat Simple_repeat 1 92 0 4 1041 3508 80 12 41 chr6 59894266 59894773 -89622264 + L1_Mus2 LINE L1 6075 6566 0 4 1041 577 214 19 65 chr6 59894828 59894983 -89622054 - B1_Mur2 SINE Alu -1 148 1 4 1041 17902 142 40 13 chr6 59895531 59899382 -89617655 - L1_Mus3 LINE L1 -184 6454 2540 4 1042 1460 184 36 62 chr6 59900115 59900452 -89616585 + ORR1A4 LTR MaLR 1 328 -1 4 1042 264 316 110 33 chr6 59901540 59901785 -89615252 - Lx8 LINE L1 0 7473 7210 4 1042 274 299 10 30 chr6 59903068 59903168 -89613869 + CT-rich Low_complexity Low_complexity 6 103 0 4 1042 731 209 126 19 chr6 59903173 59903399 -89613638 + ORR1C2 LTR MaLR 156 382 -2 4 1042 1126 253 31 48 chr6 59903625 59903978 -89613059 + RMER4B LTR ERVK 2 348 -237 4 1042 363 329 7 7 chr6 59904035 59904176 -89612861 - MuRRS4-int LTR ERV1 -3617 1446 1306 4 1042 475 215 158 0 chr6 59904582 59904740 -89612297 - RLTR47_MM LTR ERV1 0 532 350 4 1042 928 320 78 89 chr6 59904748 59906021 -89611016 - MYSERV-int LTR ERVK -1042 5508 4250 4 1042 541 279 28 0 chr6 59906053 59906232 -89610805 - MYSERV-int LTR ERVK -2386 4164 3981 4 1042 401 134 37 0 chr6 59906401 59906483 -89610554 + MurERV4_19-int LTR ERVK 2319 2403 -3377 4 1042 28 61 0 0 chr6 59906565 59906614 -89610423 + AT_rich Low_complexity Low_complexity 1 49 0 4 1042 231 277 8 56 chr6 59906627 59906753 -89610284 - Lx9 LINE L1 0 7644 7525 4 1042 35 54 0 0 chr6 59906803 59906859 -89610178 + AT_rich Low_complexity Low_complexity 1 56 0 4 1042 339 333 105 37 chr6 59907991 59908153 -89608884 + B3 SINE B2 42 214 -2 4 1042 39 0 0 0 chr6 59909513 59909552 -89607485 + AT_rich Low_complexity Low_complexity 1 39 0 4 1042 3124 149 11 14 chr6 59910661 59911220 -89605817 + Lx LINE L1 5589 6145 -509 4 1042 573 35 0 44 chr6 59911282 59911373 -89605664 + (TTATA)n Simple_repeat Simple_repeat 3 89 0 4 1042 206 77 0 49 chr6 59911850 59911891 -89605146 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 4 1042 320 399 6 19 chr6 59912182 59912343 -89604694 - B3 SINE B2 -6 210 52 4 1042 1427 252 13 56 chr6 59912526 59912921 -89604116 + ORR1C1 LTR MaLR 1 378 0 4 1042 814 73 0 0 chr6 59913004 59913114 -89603923 - B1_Mm SINE Alu -36 111 2 4 1042 460 195 8 103 chr6 59913013 59913139 -89603898 - MT2B LTR ERVL -344 257 144 4 1042 708 209 0 0 chr6 59913209 59913343 -89603694 - URR1B DNA MER1_type -1 224 91 4 1042 209 213 0 0 chr6 59914697 59914744 -89602293 + T-rich Low_complexity Low_complexity 1 47 0 4 1042 252 143 0 0 chr6 59915259 59915315 -89601722 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 4 1042 1357 268 18 20 chr6 59915327 59915701 -89601336 + ORR1B1 LTR MaLR 1 367 0 4 1042 3259 266 44 46 chr6 59915701 59916855 -89600182 + ORR1B1-int LTR MaLR 1 1152 -811 4 1042 2431 128 8 5 chr6 59916860 59917260 -89599777 + L1_Mus4 LINE L1 6230 6630 -6 4 1042 625 260 111 66 chr6 59917281 59917524 -89599513 - RMER19B LTR ERVK -342 560 307 4 1042 792 208 23 23 chr6 59917543 59917764 -89599273 - MurERV4_19-int LTR ERVK -3 5777 5557 5 1042 2804 228 16 24 chr6 59917767 59917778 -89599259 - Lx2B LINE L1 -722 6278 6268 5 1042 390 107 0 97 chr6 59917778 59917871 -89599166 - Lx2A1 LINE L1 0 7008 6925 5 1042 2804 228 16 24 chr6 59917871 59918161 -89598876 - Lx2B LINE L1 -733 6267 5978 5 1042 3913 162 79 81 chr6 59918161 59918623 -89598414 - RMER17A2 LTR ERVK 0 906 447 5 1042 648 0 0 0 chr6 59918623 59918695 -89598342 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1042 3913 162 79 81 chr6 59918695 59919139 -89597898 - RMER17A2 LTR ERVK -460 446 2 5 1042 3562 203 143 83 chr6 59919139 59920375 -89596662 - Lx2B LINE L1 -1023 5977 4670 5 1042 932 245 34 169 chr6 59920375 59920413 -89596624 - RMER4A LTR ERVK -81 385 352 5 1042 1225 73 17 0 chr6 59920413 59920590 -89596447 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1042 932 245 34 169 chr6 59920590 59920817 -89596220 - RMER4A LTR ERVK -115 351 155 5 1042 288 0 0 0 chr6 59920817 59920849 -89596188 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1042 932 245 34 169 chr6 59920849 59920886 -89596151 - RMER4A LTR ERVK -312 154 147 5 1042 1879 113 0 24 chr6 59920886 59921177 -89595860 - L1Md_F2 LINE L1 -12 6570 6287 5 1042 932 245 34 169 chr6 59921177 59921315 -89595722 - RMER4A LTR ERVK -320 146 3 5 1042 633 220 132 0 chr6 59921551 59921733 -89595304 - ORR1C1 LTR MaLR -4 374 169 5 1042 270 0 0 0 chr6 59921785 59921815 -89595222 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1042 347 345 87 7 chr6 59923117 59923266 -89593771 - B3 SINE B2 -9 207 47 5 1042 3539 141 52 2 chr6 59923919 59924521 -89592516 - Lx3_Mus LINE L1 -11 6998 6367 5 1042 2962 155 18 0 chr6 59924521 59925032 -89592005 + Lx3_Mus LINE L1 5818 6337 -672 5 1042 2407 166 38 11 chr6 59925469 59925914 -89591123 - Lx3_Mus LINE L1 -430 6224 5768 5 1042 25 51 0 0 chr6 59926100 59926139 -89590898 + AT_rich Low_complexity Low_complexity 1 39 0 5 1042 1644 254 124 21 chr6 59927070 59927796 -89589241 - RLTR21 LTR ERVK -136 1436 675 5 1042 223 333 71 20 chr6 59928152 59928250 -89588787 + MIRc SINE MIR 51 153 -115 5 1042 28 48 0 0 chr6 59928253 59928295 -89588742 + AT_rich Low_complexity Low_complexity 1 42 0 5 1042 27 0 0 0 chr6 59929190 59929217 -89587820 + AT_rich Low_complexity Low_complexity 1 27 0 5 1042 523 237 52 7 chr6 59929217 59929370 -89587667 - Lx3_Mus LINE L1 -23 6986 6827 5 1042 233 96 178 0 chr6 59929358 59929431 -89587606 + Lx3_Mus LINE L1 6916 7001 -8 5 1042 236 281 22 33 chr6 59929488 59929580 -89587457 + L1_Rod LINE L1 518 608 -6564 5 1042 6439 151 30 3 chr6 59929586 59930672 -89586365 - Lx3_Mus LINE L1 -166 6843 5729 5 1042 7368 139 32 77 chr6 59930672 59932590 -89584447 + Lx3_Mus LINE L1 4057 5586 -297 5 1042 8283 37 1 0 chr6 59932591 59933584 -89583453 + L1Md_A LINE L1 5588 6581 -1 5 1042 1892 125 14 0 chr6 59933587 59933868 -89583169 + L1_Mur1 LINE L1 5457 5741 -145 5 1042 924 0 17 8 chr6 59934788 59934905 -89582132 + (TTTTTG)n Simple_repeat Simple_repeat 2 119 0 5 1042 317 355 19 50 chr6 59935870 59936030 -89581007 + B3 SINE B2 60 214 -2 5 1042 40 21 0 0 chr6 59936032 59936079 -89580958 + AT_rich Low_complexity Low_complexity 1 47 0 5 1042 237 146 0 0 chr6 59936124 59936172 -89580865 + (CCTTG)n Simple_repeat Simple_repeat 3 50 0 5 1042 438 177 0 34 chr6 59936222 59936339 -89580698 + CT-rich Low_complexity Low_complexity 2 114 0 5 1042 687 276 50 33 chr6 59936361 59936601 -89580436 - ORR1D2-int LTR MaLR -1117 253 10 5 1042 718 269 27 89 chr6 59936604 59936860 -89580177 - ORR1D2 LTR MaLR -2 377 140 5 1042 183 100 0 0 chr6 59936874 59936904 -89580133 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1042 1073 303 79 63 chr6 59936938 59937417 -89579620 + ORR1D-int LTR MaLR 322 808 -562 5 1042 1711 225 12 15 chr6 59937586 59937992 -89579045 - MTB_Mm LTR MaLR 0 407 3 5 1042 24 0 0 0 chr6 59938027 59938051 -89578986 + AT_rich Low_complexity Low_complexity 1 24 0 5 1042 976 171 23 6 chr6 59938051 59938242 -89578795 - RMER19A LTR ERVK 0 902 566 5 1042 1402 114 0 5 chr6 59938329 59938541 -89578496 + L1_Mus1 LINE L1 6351 6561 -6 5 1042 333 269 13 13 chr6 59938997 59939076 -89577961 + RSINE1 SINE B4 41 119 -46 5 1042 8910 91 6 3 chr6 59939083 59941004 -89576033 - L1Md_F2 LINE L1 -17 6565 4637 5 1042 733 83 9 0 chr6 59941003 59941111 -89575926 + L1Md_F2 LINE L1 4528 4636 -1247 5 1042 384 22 0 0 chr6 59941175 59941220 -89575817 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1042 989 105 0 27 chr6 59941458 59941605 -89575432 + B1_Mm SINE Alu 2 144 -3 5 1042 1246 174 25 0 chr6 59942537 59942778 -89574259 + Lx3_Mus LINE L1 6758 7004 -5 5 1042 734 230 68 12 chr6 59943342 59943505 -89573532 - RLTR26 LTR ERVK 0 642 471 5 1042 1237 83 48 0 chr6 59943515 59943683 -89573354 + L1Md_T LINE L1 5410 5585 -298 5 1042 8047 49 0 0 chr6 59943684 59944680 -89572357 + L1Md_T LINE L1 5587 6582 0 5 1042 192 97 0 0 chr6 59945303 59945334 -89571703 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1042 798 70 0 0 chr6 59945334 59945448 -89571589 + (CA)n Simple_repeat Simple_repeat 1 114 0 5 1042 671 134 8 0 chr6 59945537 59945656 -89571381 + (TTCC)n Simple_repeat Simple_repeat 3 122 0 5 1042 21 36 0 0 chr6 59947173 59947201 -89569836 + AT_rich Low_complexity Low_complexity 1 28 0 5 1042 556 300 9 75 chr6 59947506 59947733 -89569304 - B3 SINE B2 -4 212 1 5 1042 203 61 0 29 chr6 59948126 59948160 -89568877 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 5 1042 326 351 34 45 chr6 59949436 59949612 -89567425 - Lx8 LINE L1 -129 7344 7171 5 1042 328 94 62 0 chr6 59949622 59949686 -89567351 + T-rich Low_complexity Low_complexity 2 69 0 5 1042 1012 221 0 0 chr6 59949698 59949915 -89567122 - Lx2 LINE L1 0 6997 6781 5 1042 660 36 0 0 chr6 59949921 59950004 -89567033 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 1042 310 319 45 55 chr6 59950017 59950219 -89566818 - Lx8 LINE L1 -325 7148 6949 5 1042 29 0 0 0 chr6 59950277 59950306 -89566731 + AT_rich Low_complexity Low_complexity 1 29 0 5 1042 369 0 0 0 chr6 59951053 59951094 -89565943 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 5 1042 3376 76 2 13 chr6 59951139 59951604 -89565433 - L1Md_F2 LINE L1 0 6582 6123 5 1042 7262 88 5 6 chr6 59951779 59953204 -89563833 - L1Md_F2 LINE L1 -2 6580 5161 5 1042 1855 95 0 0 chr6 59953194 59953457 -89563580 - L1_Mm LINE L1 -568 5315 5053 5 1042 337 275 104 42 chr6 59953986 59954130 -89562907 + B3 SINE B2 59 211 -5 5 1042 30 69 0 0 chr6 59955864 59955922 -89561115 + AT_rich Low_complexity Low_complexity 1 58 0 5 1042 256 143 17 39 chr6 59956089 59956148 -89560889 + MTD LTR MaLR 1 56 -363 5 1042 468 293 109 36 chr6 59956698 59957017 -89560020 + MTD LTR MaLR 53 377 -2 5 1042 489 34 0 0 chr6 59957036 59957095 -89559942 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1042 482 346 92 39 chr6 59957554 59957891 -89559146 + MTEa LTR MaLR 23 377 -2 5 1042 566 339 57 20 chr6 59958070 59958314 -89558723 - Lx8 LINE L1 -631 6842 6590 5 1042 2980 92 24 0 chr6 59958421 59958754 -89558283 - L1_Mm LINE L1 -305 5578 5245 5 1042 180 77 0 0 chr6 59958754 59958780 -89558257 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1042 2980 92 24 0 chr6 59958780 59958868 -89558169 - L1_Mm LINE L1 -639 5244 5148 5 1042 6940 97 7 3 chr6 59958870 59959850 -89557187 + L1Md_F2 LINE L1 5587 6570 -12 5 1042 640 300 66 21 chr6 59959850 59960092 -89556945 - Lx8 LINE L1 -993 6480 6228 5 1042 5188 206 15 17 chr6 59960258 59961473 -89555564 + L1_Mur2 LINE L1 4136 5347 -530 5 1042 1021 200 78 31 chr6 59961443 59961701 -89555336 + Lx LINE L1 6385 6654 0 5 1042 319 371 40 18 chr6 59962235 59962512 -89554525 + Kanga1 DNA Tc2 8 290 -1455 5 1042 266 326 90 0 chr6 59963653 59963742 -89553295 - MTEb LTR MaLR -118 261 165 5 1042 33 0 0 0 chr6 59963754 59963787 -89553250 + AT_rich Low_complexity Low_complexity 1 33 0 5 1042 452 269 13 159 chr6 59965141 59965367 -89551670 + B3A SINE B2 2 198 0 5 1042 378 195 26 0 chr6 59965782 59965859 -89551178 - B2_Mm2 SINE B2 -115 80 2 5 1042 334 204 19 0 chr6 59966518 59966626 -89550411 + CT-rich Low_complexity Low_complexity 1 110 0 5 1042 971 163 0 0 chr6 59967003 59967150 -89549887 + B1_Mus1 SINE Alu 2 148 0 5 1042 1171 41 7 14 chr6 59967391 59967539 -89549498 + B1_Mus1 SINE Alu 2 148 0 5 1042 259 74 18 36 chr6 59967540 59967596 -89549441 + (CAAAAA)n Simple_repeat Simple_repeat 3 57 0 5 1042 27 29 0 0 chr6 59968148 59968182 -89548855 + AT_rich Low_complexity Low_complexity 1 34 0 5 1042 189 171 0 0 chr6 59968195 59968230 -89548807 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1042 512 320 0 0 chr6 59968910 59969035 -89548002 + B3 SINE B2 1 125 -91 5 1042 279 0 0 0 chr6 59969135 59969166 -89547871 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1042 558 156 15 15 chr6 59969720 59969850 -89547187 - Lx9 LINE L1 -2 7642 7513 5 1042 2429 258 132 42 chr6 59969860 59970225 -89546812 + RMER17B LTR ERVK 5 397 -561 5 1042 453 36 0 0 chr6 59970225 59970280 -89546757 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1042 2429 258 132 42 chr6 59970280 59970784 -89546253 + RMER17B LTR ERVK 398 951 -7 5 1042 942 193 0 6 chr6 59970968 59971140 -89545897 - B2_Mm2 SINE B2 -23 172 2 5 1042 477 0 0 0 chr6 59971338 59971391 -89545646 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1042 755 210 0 6 chr6 59971736 59971913 -89545124 + (TG)n Simple_repeat Simple_repeat 1 176 0 5 1042 1228 236 73 102 chr6 59972045 59972561 -89544476 + RMER19C LTR ERVK 176 735 -2 5 1042 233 287 13 93 chr6 59972563 59972713 -89544324 - L1_Mur3 LINE L1 -604 5276 5139 5 1042 25 51 0 0 chr6 59973068 59973107 -89543930 + AT_rich Low_complexity Low_complexity 1 39 0 5 1042 1356 75 37 11 chr6 59973534 59973723 -89543314 + L1Md_F2 LINE L1 5392 5585 -298 5 1042 6964 66 4 103 chr6 59973724 59974828 -89542209 + L1Md_F2 LINE L1 5587 6580 -2 5 1042 1458 146 8 4 chr6 59975000 59975247 -89541790 - L1_Mus3 LINE L1 -16 6622 6375 5 1042 1378 128 27 5 chr6 59975247 59975467 -89541570 + L1_Mus3 LINE L1 5998 6222 -416 5 1042 3108 131 0 0 chr6 59975486 59975952 -89541085 - L1_Mus1 LINE L1 -2 6565 6100 5 1042 1290 111 0 1 chr6 59975952 59976160 -89540877 + L1_Mus1 LINE L1 5878 6082 -485 5 1042 4091 102 2 0 chr6 59976802 59977399 -89539638 - L1_Mus1 LINE L1 0 6567 5998 5 1042 241 151 0 36 chr6 59977399 59977423 -89539614 + T-rich Low_complexity Low_complexity 2 24 0 5 1042 959 64 28 0 chr6 59977427 59977568 -89539469 - L1Md_F3 LINE L1 -3 6581 6437 5 1042 8246 128 18 30 chr6 59977568 59979217 -89537820 - L1_Mus1 LINE L1 -525 6042 4427 5 1042 6201 82 4 33 chr6 59979217 59980123 -89536914 - L1Md_F2 LINE L1 -12 6570 5691 5 1042 13212 94 21 4 chr6 59980123 59981624 -89535413 + L1_Mm LINE L1 3713 5234 -649 5 1042 720 0 0 0 chr6 59981624 59981704 -89535333 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1042 13212 94 21 4 chr6 59981704 59982106 -89534931 + L1_Mm LINE L1 5235 5648 -235 5 1042 5499 137 35 0 chr6 59982100 59983020 -89534017 - L1_Mus1 LINE L1 -1440 4443 3492 5 1042 2390 148 19 3 chr6 59983020 59983399 -89533638 + IAPEY_LTR LTR ERVK 1 385 0 5 1042 53673 88 10 13 chr6 59983399 59990929 -89526108 + IAPEy-int LTR ERVK 1 7507 -6 5 1042 2507 127 18 5 chr6 59990935 59991315 -89525722 + IAPEY_LTR LTR ERVK 1 385 0 5 1042 380 19 39 0 chr6 59991323 59991375 -89525662 + (TTTTTG)n Simple_repeat Simple_repeat 5 58 0 5 1042 12992 148 34 8 chr6 59991375 59994395 -89522642 - L1_Mus1 LINE L1 -2395 3488 387 5 1042 1480 191 21 14 chr6 59994408 59994695 -89522342 - ORR1A4 LTR MaLR -2 327 39 6 1042 448 280 158 39 chr6 59994895 59995155 -89521882 + Lx8 LINE L1 7179 7469 -4 6 1042 2160 81 77 18 chr6 59995507 59995833 -89521204 - IAPLTR4 LTR ERVK 0 345 1 6 1042 229 377 0 0 chr6 59996070 59996147 -89520890 - ID4_ SINE ID -5 78 2 6 1042 346 359 37 26 chr6 59996193 59996382 -89520655 + L1MC4a LINE L1 5678 5868 -2014 6 1042 576 0 0 0 chr6 59996683 59996747 -89520290 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1042 495 48 0 0 chr6 59996747 59996808 -89520229 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1042 3908 175 35 20 chr6 59996843 59997640 -89519397 + RMER17D2 LTR ERVK 1 809 0 6 1042 2591 103 3 3 chr6 59997775 59998145 -89518892 - Lx3_Mus LINE L1 -247 6762 6393 6 1042 7264 204 12 18 chr6 59998155 59998609 -89518428 + L1_Mur1 LINE L1 2937 3373 -2513 6 1042 760 46 9 18 chr6 59998609 59998719 -89518318 + (TTTC)n Simple_repeat Simple_repeat 3 111 0 6 1042 7264 204 12 18 chr6 59998719 59998832 -89518205 + L1_Mur1 LINE L1 3374 3485 -2401 6 1042 344 40 20 0 chr6 59998832 59998882 -89518155 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 6 1042 7264 204 12 18 chr6 59998882 60000000 -89517037 + L1_Mur1 LINE L1 3486 4613 -1273 6 1042 2182 238 7 2 chr6 60000000 60000548 -89516489 + Lx2 LINE L1 4614 5164 -722 1 1042 3746 164 22 3 chr6 60000543 60001230 -89515807 + Lx2 LINE L1 5540 6246 -751 1 1042 497 292 0 58 chr6 60001230 60001386 -89515651 + RLTR21 LTR ERVK 117 263 -1309 2 1042 998 109 7 7 chr6 60001386 60001533 -89515504 + B1_Mus1 SINE Alu 1 147 -1 3 1042 343 52 17 17 chr6 60001535 60001594 -89515443 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 4 1042 198 71 0 0 chr6 60001603 60001631 -89515406 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1042 840 221 26 118 chr6 60001643 60001915 -89515122 + RLTR21 LTR ERVK 243 489 -1083 2 1042 1642 167 25 16 chr6 60001933 60002255 -89514782 - ORR1A4 LTR MaLR -4 325 1 6 1042 1308 218 59 38 chr6 60002259 60002638 -89514399 - ORR1A4-int LTR MaLR -75 1434 1098 6 1042 219 114 0 0 chr6 60002726 60002761 -89514276 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1042 1152 220 51 38 chr6 60002799 60003189 -89513848 - RLTR21 LTR ERVK -518 1054 660 8 1042 2601 116 0 3 chr6 60003189 60003562 -89513475 - IAPEY_LTR LTR ERVK -1 384 13 9 1042 308 143 0 0 chr6 60003541 60003590 -89513447 - IAPEY_LTR LTR ERVK -308 49 1 1 1042 54254 85 10 12 chr6 60003590 60009758 -89507279 - IAPEy-int LTR ERVK 0 7513 1345 1 1042 4417 12 0 0 chr6 60009758 60010251 -89506786 + MT2_Mm LTR ERVL 1 493 0 1 1042 54254 85 10 12 chr6 60010251 60011610 -89505427 - IAPEy-int LTR ERVK -6169 1344 1 1 1042 2721 98 16 3 chr6 60011610 60011990 -89505047 - IAPEY_LTR LTR ERVK 0 385 1 1 1042 2285 258 20 64 chr6 60011991 60012679 -89504358 - RLTR21 LTR ERVK -907 665 8 8 1042 896 138 7 7 chr6 60012951 60013097 -89503940 + B1_Mus1 SINE Alu 3 148 0 1 1042 497 30 15 0 chr6 60013152 60013219 -89503818 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 1 1042 21 0 0 0 chr6 60014065 60014086 -89502951 + AT_rich Low_complexity Low_complexity 1 21 0 1 1042 228 35 0 0 chr6 60014637 60014666 -89502371 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1042 1259 253 57 27 chr6 60014668 60015038 -89501999 + MYSERV6-int LTR ERVK 8523 8903 -56 1 1042 194 0 39 0 chr6 60015123 60015149 -89501888 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1042 401 333 119 36 chr6 60015149 60015401 -89501636 + RLTR12B LTR ERVK 48 320 -208 1 1042 1106 88 0 7 chr6 60015591 60015739 -89501298 + B1_Mm SINE Alu 1 147 0 1 1042 194 0 39 0 chr6 60015742 60015768 -89501269 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1042 1052 225 118 63 chr6 60015931 60016263 -89500774 + ORR1C1 LTR MaLR 29 378 0 2 1042 468 150 0 0 chr6 60016293 60016373 -89500664 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 1042 236 77 26 0 chr6 60016414 60016453 -89500584 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1042 243 0 0 0 chr6 60017026 60017053 -89499984 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1042 1111 232 113 116 chr6 60017317 60017439 -89499598 - RMER4B LTR ERVK 0 466 351 2 1042 198 0 0 0 chr6 60017439 60017461 -89499576 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 1042 1183 228 56 56 chr6 60017461 60017805 -89499232 - RMER4B LTR ERVK -116 350 1 2 1042 28 0 0 0 chr6 60017888 60017916 -89499121 + AT_rich Low_complexity Low_complexity 1 28 0 2 1042 702 254 8 0 chr6 60018687 60018817 -89498220 + ETnERV2-int LTR ERVK 7066 7196 -210 2 1042 22 56 0 0 chr6 60019217 60019253 -89497784 + AT_rich Low_complexity Low_complexity 1 36 0 2 1042 23 68 0 0 chr6 60019422 60019466 -89497571 + AT_rich Low_complexity Low_complexity 1 44 0 3 1042 30 103 0 0 chr6 60020855 60020962 -89496075 + AT_rich Low_complexity Low_complexity 1 107 0 3 1042 24 0 0 0 chr6 60021032 60021056 -89495981 + AT_rich Low_complexity Low_complexity 1 24 0 3 1042 1999 178 85 57 chr6 60022313 60022807 -89494230 - L1_Mus2 LINE L1 0 6566 6059 3 1042 3301 174 73 34 chr6 60022809 60023594 -89493443 - MurERV4_19-int LTR ERVK -2218 3562 2748 3 1042 28238 83 9 9 chr6 60024128 60028093 -89488944 + L1Md_F2 LINE L1 1618 5585 -298 3 1042 7672 60 5 4 chr6 60028094 60029089 -89487948 + L1Md_F2 LINE L1 5587 6582 0 3 1042 1115 233 53 4 chr6 60029122 60029385 -89487652 + ORR1C1 LTR MaLR 93 368 -10 3 1042 234 105 0 0 chr6 60029461 60029499 -89487538 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1042 573 125 87 0 chr6 60029641 60029745 -89487292 - RMER4B LTR ERVK -472 113 1 3 1042 536 263 51 6 chr6 60030065 60030222 -89486815 + Lx5 LINE L1 6838 7001 -49 3 1042 26 30 0 0 chr6 60030880 60030913 -89486124 + AT_rich Low_complexity Low_complexity 1 33 0 4 1043 21 0 0 0 chr6 60031115 60031136 -89485901 + AT_rich Low_complexity Low_complexity 1 21 0 4 1043 203 171 0 0 chr6 60031186 60031227 -89485810 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1043 875 80 8 0 chr6 60031421 60031546 -89485491 + (GA)n Simple_repeat Simple_repeat 2 127 0 4 1043 1042 133 6 44 chr6 60031766 60031947 -89485090 - B2_Mm2 SINE B2 -20 175 2 4 1043 226 206 0 31 chr6 60032828 60032893 -89484144 + A-rich Low_complexity Low_complexity 2 64 0 4 1043 410 88 15 0 chr6 60033644 60033712 -89483325 + (TAAA)n Simple_repeat Simple_repeat 2 70 0 4 1043 6785 97 36 12 chr6 60033796 60035282 -89481755 + L1_Mus2 LINE L1 5067 6566 0 4 1043 27 87 0 0 chr6 60035474 60035543 -89481494 + AT_rich Low_complexity Low_complexity 1 69 0 4 1043 23 54 0 0 chr6 60036011 60036048 -89480989 + AT_rich Low_complexity Low_complexity 1 37 0 4 1043 372 269 35 0 chr6 60036979 60037113 -89479924 - RMER12B LTR ERVK -136 1436 1284 5 1043 656 253 26 1 chr6 60037254 60037467 -89479570 - L1_Mur3 LINE L1 -818 5059 4836 5 1043 958 133 0 11 chr6 60037485 60037575 -89479462 + (TTC)n Simple_repeat Simple_repeat 1 90 0 5 1043 1139 100 0 11 chr6 60037575 60037757 -89479280 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1043 958 133 0 11 chr6 60037757 60037848 -89479189 + (TTC)n Simple_repeat Simple_repeat 2 90 0 5 1043 351 256 124 27 chr6 60037874 60037989 -89479048 - L1_Mur3 LINE L1 -1120 4760 4625 5 1043 513 0 0 0 chr6 60037989 60038046 -89478991 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1043 186 43 0 0 chr6 60038046 60038068 -89478969 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1043 351 256 124 27 chr6 60038068 60038136 -89478901 - L1_Mur3 LINE L1 -1256 4624 4559 5 1043 3075 278 146 14 chr6 60038145 60038219 -89478818 - L1_Mur3 LINE L1 -1516 4364 4277 5 1043 288 0 0 0 chr6 60038219 60038251 -89478786 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1043 3075 278 146 14 chr6 60038251 60039155 -89477882 - L1_Mur3 LINE L1 -1604 4276 3335 5 1043 198 91 0 0 chr6 60039155 60039188 -89477849 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 5 1043 3075 278 146 14 chr6 60039188 60039848 -89477189 - L1_Mur3 LINE L1 -2546 3334 2510 5 1043 1244 241 101 6 chr6 60039858 60040184 -89476853 + ORR1B2 LTR MaLR 3 359 -8 5 1043 8042 29 0 0 chr6 60040685 60041640 -89475397 - L1Md_T LINE L1 -666 5217 4263 6 1043 3274 13 0 0 chr6 60041633 60042007 -89475030 + L1Md_T LINE L1 5213 5586 -297 6 1043 8878 6 0 0 chr6 60042007 60042991 -89474046 + L1Md_T LINE L1 5587 6570 -12 6 1043 340 381 67 34 chr6 60043086 60043265 -89473772 + B4A SINE B4 48 232 -60 6 1043 333 0 0 0 chr6 60043304 60043341 -89473696 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1043 378 0 0 0 chr6 60043341 60043382 -89473655 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1043 2752 82 42 3 chr6 60043895 60044276 -89472761 + MTA_Mm LTR MaLR 1 396 0 6 1043 595 268 69 42 chr6 60044541 60044802 -89472235 - Lx7 LINE L1 -1827 5869 5602 6 1043 35476 45 1 3 chr6 60045035 60050321 -89466716 + L1Md_T LINE L1 221 5589 -297 6 1043 8406 34 0 0 chr6 60050321 60051317 -89465720 + L1Md_T LINE L1 5590 6585 0 6 1043 600 240 151 6 chr6 60051324 60051496 -89465541 - Lx7 LINE L1 -323 5557 5361 6 1043 681 24 0 0 chr6 60051496 60051579 -89465458 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1043 639 88 0 0 chr6 60051579 60051669 -89465368 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1043 499 233 229 16 chr6 60051669 60051749 -89465288 - L1_Mm LINE L1 -762 5394 5286 6 1043 272 397 57 14 chr6 60051977 60052189 -89464848 - Lx8 LINE L1 -244 7229 7009 7 1043 2201 133 25 0 chr6 60052473 60052834 -89464203 - L1_Mus3 LINE L1 -7 6631 6262 7 1043 889 173 0 6 chr6 60052836 60053005 -89464032 + L1_Mm LINE L1 4579 4746 -1137 7 1043 2798 206 111 39 chr6 60053004 60053801 -89463236 + L1_Mur1 LINE L1 3083 3968 -1918 7 1043 3970 49 0 4 chr6 60053801 60054290 -89462747 + L1Md_F2 LINE L1 6087 6573 -9 7 1043 1352 53 30 0 chr6 60054294 60054463 -89462574 - B2_Mm1t SINE B2 -19 174 1 7 1043 2798 206 111 39 chr6 60054463 60054607 -89462430 + L1_Mur1 LINE L1 3969 4097 -1789 7 1043 225 104 60 40 chr6 60054882 60054932 -89462105 + (TTATA)n Simple_repeat Simple_repeat 2 52 0 7 1043 32 43 0 0 chr6 60056741 60056787 -89460250 + AT_rich Low_complexity Low_complexity 1 46 0 7 1043 22 0 0 0 chr6 60056792 60056814 -89460223 + AT_rich Low_complexity Low_complexity 1 22 0 7 1043 1681 199 71 3 chr6 60056920 60057312 -89459725 - BGLII_Mus LTR ERVK 0 422 4 7 1043 1686 204 67 16 chr6 60057395 60057769 -89459268 + ORR1B1 LTR MaLR 1 393 -1 8 1043 1403 247 12 3 chr6 60057783 60058124 -89458913 + ORR1B1-int LTR MaLR 31 374 -1589 8 1043 864 200 0 0 chr6 60058151 60058331 -89458706 + T-rich Low_complexity Low_complexity 1 180 0 8 1043 965 92 42 14 chr6 60058335 60058479 -89458558 - B1_Mus1 SINE Alu 0 148 1 8 1043 4221 243 61 103 chr6 60058499 60059835 -89457202 + ORR1B1-int LTR MaLR 390 1706 -257 8 1043 459 0 0 0 chr6 60059835 60059886 -89457151 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1043 4221 243 61 103 chr6 60059886 60060149 -89456888 + ORR1B1-int LTR MaLR 1707 1921 -42 8 1043 1383 272 21 23 chr6 60060156 60060380 -89456657 + ORR1B1 LTR MaLR 1 227 -167 8 1043 315 156 0 0 chr6 60060380 60060444 -89456593 - L1Md_T LINE L1 -6 6576 6513 8 1043 1383 272 21 23 chr6 60060444 60060606 -89456431 + ORR1B1 LTR MaLR 228 386 -8 8 1043 345 218 37 37 chr6 60060604 60060685 -89456352 + MT2B LTR ERVL 173 253 -348 8 1043 510 238 0 18 chr6 60060625 60060788 -89456249 + ORR1B1-int LTR MaLR 762 921 -1042 8 1043 383 201 33 3 chr6 60060800 60060880 -89456157 + ORR1C2-int LTR MaLR 1316 1376 -587 8 1043 189 246 0 0 chr6 60061191 60061256 -89455781 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 8 1043 320 0 25 0 chr6 60061329 60061369 -89455668 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 8 1043 25 0 0 0 chr6 60061431 60061456 -89455581 + AT_rich Low_complexity Low_complexity 1 25 0 8 1043 702 35 0 0 chr6 60061575 60061660 -89455377 + (TC)n Simple_repeat Simple_repeat 1 85 0 9 1043 383 328 34 67 chr6 60061663 60061931 -89455106 - Lx9 LINE L1 -304 7340 7082 9 1043 553 368 34 40 chr6 60061923 60062277 -89454760 - Lx9 LINE L1 -934 6710 6359 9 1043 411 306 24 43 chr6 60062695 60062983 -89454054 - L1M2 LINE L1 -2360 3783 3497 9 1043 351 0 0 0 chr6 60063416 60063455 -89453582 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 9 1043 4149 73 0 7 chr6 60063458 60064007 -89453030 - L1Md_F2 LINE L1 -19 6563 6019 9 1043 4763 159 29 48 chr6 60064297 60065246 -89451791 - Lx3A LINE L1 -317 6664 5735 9 1043 1580 184 26 3 chr6 60065246 60065551 -89451486 + Lx3A LINE L1 6668 6979 -2 9 1043 673 245 36 41 chr6 60065625 60065821 -89451216 + ORR1C2 LTR MaLR 1 195 -189 8 1043 248 182 0 25 chr6 60065829 60065908 -89451129 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 9 1043 490 231 47 2 chr6 60066012 60066156 -89450881 - Lx3C LINE L1 -913 6096 5942 9 1043 2745 131 29 7 chr6 60066157 60066602 -89450435 - RLTR13D2 LTR ERVK -568 455 1 9 1043 1605 183 83 32 chr6 60066613 60067023 -89450014 - Lx3C LINE L1 -1041 5935 5512 9 1043 1330 263 64 25 chr6 60067074 60067664 -89449373 - MYSERV-int LTR ERVK -627 5923 5311 9 1043 293 288 158 61 chr6 60067665 60067861 -89449176 - RMER4A LTR ERVK -23 443 229 1 1043 2846 226 18 102 chr6 60067963 60068838 -89448199 + RLTR21 LTR ERVK 161 968 -604 1 1043 1103 69 7 0 chr6 60068838 60068983 -89448054 + B1_Mus1 SINE Alu 1 146 -2 1 1043 2846 226 18 102 chr6 60068983 60069083 -89447954 + RLTR21 LTR ERVK 969 1054 -518 1 1043 1447 65 0 0 chr6 60069088 60069272 -89447765 - L1_Mus1 LINE L1 -673 5894 5711 1 1043 21 0 0 0 chr6 60070116 60070137 -89446900 + AT_rich Low_complexity Low_complexity 1 21 0 1 1043 3631 225 5 57 chr6 60070302 60071067 -89445970 + Lx LINE L1 4984 5747 -136 1 1043 3712 77 2 0 chr6 60071067 60071550 -89445487 + L1Md_T LINE L1 6099 6582 0 1 1043 3631 168 5 113 chr6 60071550 60071824 -89445213 + Lx LINE L1 5748 5974 -680 1 1043 2168 165 25 2 chr6 60071826 60072234 -89444803 - L1VL4 LINE L1 -3492 2391 1975 1 1043 3459 150 19 7 chr6 60072252 60073329 -89443708 - L1VL4 LINE L1 -2139 1775 675 1 1043 1513 251 203 18 chr6 60073419 60073922 -89443115 - RMER19B LTR ERVK -2 900 305 1 1043 929 78 0 21 chr6 60074064 60074208 -89442829 + L1Md_F2 LINE L1 6430 6570 -12 1 1043 2952 155 26 86 chr6 60074214 60074900 -89442137 + RMER17D2 LTR ERVK 165 809 0 1 1043 1839 210 71 6 chr6 60074900 60075350 -89441687 - Lx2B LINE L1 -960 6040 5587 1 1043 429 179 46 19 chr6 60075350 60075458 -89441579 - Lx2B LINE L1 -484 5393 5283 1 1043 6485 95 7 0 chr6 60075462 60076349 -89440688 - L1_Mus1 LINE L1 0 6567 5675 1 1043 507 111 33 0 chr6 60076342 60076432 -89440605 + L1_Mm LINE L1 3231 3323 -2560 1 1043 352 284 110 156 chr6 60076527 60076853 -89440184 + RLTR12B LTR ERVK 18 328 -200 1 1043 369 0 0 0 chr6 60077113 60077154 -89439883 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1043 1047 280 46 61 chr6 60077160 60077506 -89439531 + ORR1C1 LTR MaLR 38 378 0 1 1043 3310 171 29 8 chr6 60077554 60078218 -89438819 - Lx2B LINE L1 -1783 4094 3417 1 1043 908 129 43 0 chr6 60078221 60078360 -89438677 + Lx2 LINE L1 6497 6641 -356 1 1043 1152 177 5 9 chr6 60078362 60078584 -89438453 + Lx2 LINE L1 6775 6995 -2 1 1043 1098 247 189 61 chr6 60078985 60079504 -89437533 - RMER4A LTR ERVK 0 585 1 1 1043 24 32 0 0 chr6 60079601 60079632 -89437405 + AT_rich Low_complexity Low_complexity 1 31 0 1 1043 3265 66 13 12 chr6 60079644 60080102 -89436935 + IAPEY3-int LTR ERVK 6965 7376 -304 1 1043 1035 99 61 12 chr6 60080102 60080265 -89436772 + IAPEY3_LTR LTR ERVK 162 332 0 1 1043 25 51 0 0 chr6 60080622 60080661 -89436376 + AT_rich Low_complexity Low_complexity 1 39 0 1 1043 3932 241 40 69 chr6 60081564 60082907 -89434130 - RLTR21 LTR ERVK 0 1404 8 1 1043 871 125 0 7 chr6 60083185 60083322 -89433715 + B1_Mus1 SINE Alu 13 148 0 1 1043 198 0 0 0 chr6 60083366 60083388 -89433649 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1043 1055 92 0 7 chr6 60084243 60084385 -89432652 + B1_Mm SINE Alu 1 141 -6 1 1043 396 0 0 0 chr6 60084387 60084431 -89432606 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 1 1043 21 0 0 0 chr6 60084442 60084463 -89432574 + AT_rich Low_complexity Low_complexity 1 21 0 1 1043 244 48 48 0 chr6 60085047 60085089 -89431948 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 1043 1115 247 24 17 chr6 60085097 60085393 -89431644 + MYSERV6-int LTR ERVK 8528 8825 -134 1 1043 490 308 101 57 chr6 60085553 60085801 -89431236 + RLTR12B LTR ERVK 47 305 -223 1 1043 1012 213 120 69 chr6 60086141 60086474 -89430563 + ORR1C1 LTR MaLR 29 378 0 1 1043 182 0 105 0 chr6 60086545 60086583 -89430454 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 1 1043 226 107 36 0 chr6 60087178 60087234 -89429803 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 1 1043 217 132 0 0 chr6 60087280 60087318 -89429719 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1043 308 24 24 0 chr6 60087632 60087673 -89429364 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1043 2328 92 9 0 chr6 60087718 60088044 -89428993 - L1_Mus1 LINE L1 -331 6236 5908 1 1043 2104 94 28 0 chr6 60088044 60088362 -89428675 + L1_Mus1 LINE L1 6238 6564 -3 1 1043 869 268 42 55 chr6 60088372 60088680 -89428357 - RMER4B LTR ERVK -280 305 2 1 1043 27 29 0 0 chr6 60088770 60088804 -89428233 + AT_rich Low_complexity Low_complexity 1 34 0 1 1043 339 78 0 0 chr6 60089841 60089892 -89427145 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1043 28 86 0 0 chr6 60091746 60091816 -89425221 + AT_rich Low_complexity Low_complexity 1 70 0 1 1043 23 0 0 0 chr6 60091907 60091930 -89425107 + AT_rich Low_complexity Low_complexity 1 23 0 1 1043 721 181 196 38 chr6 60093136 60093320 -89423717 - Lx LINE L1 0 6654 6442 1 1043 342 297 46 67 chr6 60093705 60093919 -89423118 - RLTR21 LTR ERVK -140 1432 1285 1 1043 558 0 0 0 chr6 60093919 60093981 -89423056 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1043 315 0 0 0 chr6 60093981 60094015 -89423022 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1043 1538 229 46 32 chr6 60094015 60094509 -89422528 - RLTR21 LTR ERVK -478 1094 593 1 1043 414 53 0 0 chr6 60094509 60094566 -89422471 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1043 1984 279 23 17 chr6 60094589 60095111 -89421926 - RLTR21 LTR ERVK -1047 525 1 1 1043 571 313 63 47 chr6 60095590 60095845 -89421192 + RLTR12B LTR ERVK 48 306 -222 1 1043 790 138 39 0 chr6 60096159 60096289 -89420748 + B1_Mm SINE Alu 13 147 0 1 1043 3057 137 20 48 chr6 60096873 60097412 -89419625 - L1_Mus2 LINE L1 0 6566 6043 1 1043 2616 129 34 2 chr6 60097414 60097832 -89419205 - L1_Mm LINE L1 -96 5787 5357 1 1043 302 176 25 63 chr6 60097876 60097955 -89419082 + ORR1A3-int LTR MaLR 567 642 -1321 1 1043 268 56 0 0 chr6 60097955 60097991 -89419046 + MERVL-int LTR ERVL 5450 5485 0 1 1043 1784 122 51 86 chr6 60097991 60098649 -89418388 + MT2C_Mm LTR ERVL 1 584 0 1 1043 719 243 62 67 chr6 60098649 60099020 -89418017 + MYSERV6-int LTR ERVK 7945 8313 -646 1 1043 1783 205 67 5 chr6 60099026 60099458 -89417579 - L1_Mur2 LINE L1 -1261 4616 4158 1 1043 815 198 12 6 chr6 60099456 60099629 -89417408 + L1_Mur2 LINE L1 4010 4183 -1694 1 1043 283 229 22 78 chr6 60099630 60099680 -89417357 - MurERV4_19-int LTR ERVK -458 5322 5272 1 1043 2528 113 65 50 chr6 60099680 60100155 -89416882 + RLTR45 LTR ERVK 1 482 0 1 1043 283 229 22 78 chr6 60100155 60100194 -89416843 - MurERV4_19-int LTR ERVK -509 5271 5238 1 1043 6356 194 20 6 chr6 60100348 60101719 -89415318 - MurERV4_19-int LTR ERVK -560 5220 3830 1 1043 2304 189 120 4 chr6 60101725 60102218 -89414819 - Lx LINE L1 -7 6647 6098 1 1043 2829 160 37 2 chr6 60102219 60102756 -89414281 - MurERV4_19-int LTR ERVK -1946 3834 3279 1 1043 3268 216 31 3 chr6 60102748 60103489 -89413548 - MurERV4_19-int LTR ERVK -3336 2444 1683 1 1043 3558 238 15 9 chr6 60103492 60104356 -89412681 - MurERV4_19-int LTR ERVK -4230 1550 682 1 1043 4501 150 11 86 chr6 60104364 60105293 -89411744 - RMER17D LTR ERVK -2 887 29 1 1043 5474 142 34 61 chr6 60105299 60106476 -89410561 - RMER17A-int LTR ERVK -94 1634 158 1 1043 624 137 0 0 chr6 60106499 60106601 -89410436 + (GGGAGA)n Simple_repeat Simple_repeat 2 103 0 1 1043 819 181 7 7 chr6 60106602 60106752 -89410285 - RMER17A-int LTR ERVK -1578 150 1 1 1043 3625 122 25 90 chr6 60106752 60107551 -89409486 - RMER17D LTR ERVK 0 751 5 1 1043 1544 263 38 19 chr6 60107554 60107973 -89409064 - MurERV4_19-int LTR ERVK -5099 681 255 1 1043 957 97 39 0 chr6 60107985 60108140 -89408897 - L1_Mus3 LINE L1 -4 6634 6474 1 1043 2815 146 5 0 chr6 60108141 60108587 -89408450 + L1_Mus3 LINE L1 6019 6466 -172 1 1043 634 258 55 18 chr6 60108608 60108825 -89408212 - MurERV4_19-int LTR ERVK -5554 226 2 1 1043 1105 300 41 45 chr6 60108826 60109330 -89407707 - RMER19B LTR ERVK -238 664 108 1 1043 216 0 0 0 chr6 60109349 60109373 -89407664 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1043 2657 180 27 3 chr6 60109818 60110327 -89406710 + Lx3_Mus LINE L1 5389 5905 -1104 1 1043 1200 146 36 22 chr6 60110327 60110551 -89406486 + L1_Mus3 LINE L1 6396 6622 -16 1 1043 1538 211 24 51 chr6 60110551 60110613 -89406424 + Lx3_Mus LINE L1 5906 5963 -1046 1 1043 22 0 0 0 chr6 60110973 60110995 -89406042 + AT_rich Low_complexity Low_complexity 1 22 0 1 1043 198 71 0 0 chr6 60111068 60111096 -89405941 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 1043 1855 294 56 35 chr6 60111720 60112527 -89404510 + MYSERV-int LTR ERVK 3813 4636 -1914 1 1043 4143 33 12 0 chr6 60112625 60113112 -89403925 + MT2_Mm LTR ERVL 1 493 0 1 1043 1380 55 0 0 chr6 60113264 60113463 -89403574 + (TTC)n Simple_repeat Simple_repeat 1 199 0 1 1043 869 261 31 18 chr6 60113481 60113703 -89403334 - Lx3B LINE L1 -1 6972 6748 1 1043 198 103 0 0 chr6 60114714 60114743 -89402294 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1043 1104 75 0 26 chr6 60114744 60114758 -89402279 - B1_Mus2 SINE Alu 0 147 137 1 1043 437 0 0 19 chr6 60114758 60114812 -89402225 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 1 1043 1104 75 0 26 chr6 60114812 60114948 -89402089 - B1_Mus2 SINE Alu -11 136 1 1 1043 1017 224 39 12 chr6 60115004 60115261 -89401776 + MYSERV6-int LTR ERVK 8520 8783 -176 1 1043 2022 213 80 39 chr6 60115264 60115939 -89401098 + L1Md_F LINE L1 522 1205 -5411 1 1043 279 54 0 0 chr6 60115939 60115976 -89401061 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1043 19565 131 11 12 chr6 60115976 60119106 -89397931 + L1Md_F LINE L1 1159 4302 -1581 1 1043 1067 116 0 0 chr6 60119106 60119252 -89397785 - B1_Mus2 SINE Alu 0 147 2 1 1043 19565 144 8 51 chr6 60119252 60119933 -89397104 + L1Md_F LINE L1 4291 4791 -1092 1 1043 4242 144 38 1 chr6 60119933 60120626 -89396411 + L1_Mus2 LINE L1 5849 6566 0 1 1043 316 194 113 126 chr6 60120627 60120786 -89396251 + MYSERV6-int LTR ERVK 8802 8958 -1 1 1043 332 321 87 80 chr6 60120813 60121077 -89395960 + RLTR12B LTR ERVK 48 313 -215 1 1043 6993 128 7 8 chr6 60121330 60122727 -89394310 + L1_Mus3 LINE L1 5251 6638 0 1 1043 207 257 0 51 chr6 60122738 60122816 -89394221 + (CATA)n Simple_repeat Simple_repeat 2 75 0 1 1043 4147 125 53 27 chr6 60122963 60123286 -89393751 - RMER17D2 LTR ERVK 0 809 458 1 1043 315 0 0 0 chr6 60123286 60123321 -89393716 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1043 4147 125 53 27 chr6 60123321 60123785 -89393252 - RMER17D2 LTR ERVK -352 457 1 1 1043 322 321 332 41 chr6 60123843 60124122 -89392915 + MLT1F1 LTR MaLR 95 454 -115 1 1043 1107 268 44 20 chr6 60125218 60125561 -89391476 + ORR1C1 LTR MaLR 28 378 0 1 1043 223 140 40 0 chr6 60125612 60125662 -89391375 + T-rich Low_complexity Low_complexity 4 55 0 1 1043 3601 71 19 4 chr6 60126097 60126565 -89390472 + MT2C_Mm LTR ERVL 1 475 0 1 1043 1310 230 45 86 chr6 60126618 60126731 -89390306 - RMER4A LTR ERVK 0 466 358 1 1043 519 17 0 0 chr6 60126731 60126791 -89390246 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1043 1310 230 45 86 chr6 60126791 60127163 -89389874 - RMER4A LTR ERVK -109 357 2 1 1043 24 0 0 0 chr6 60127940 60127964 -89389073 + AT_rich Low_complexity Low_complexity 1 24 0 1 1043 342 0 0 0 chr6 60128012 60128050 -89388987 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1043 21 0 0 0 chr6 60128802 60128823 -89388214 + AT_rich Low_complexity Low_complexity 1 21 0 1 1043 35 54 0 0 chr6 60129965 60130021 -89387016 + AT_rich Low_complexity Low_complexity 1 56 0 1 1043 200 139 28 0 chr6 60130187 60130223 -89386814 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 1043 1205 82 0 6 chr6 60130413 60130585 -89386452 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1 1043 195 162 0 0 chr6 60130587 60130624 -89386413 + T-rich Low_complexity Low_complexity 1 37 0 1 1043 1824 92 4 19 chr6 60130629 60130896 -89386141 - L1_Mus2 LINE L1 -1 6565 6303 1 1043 427 283 86 10 chr6 60131973 60132168 -89384869 - RLTR21 LTR ERVK -136 1436 1285 1 1043 294 87 0 0 chr6 60132173 60132219 -89384818 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1043 1586 193 7 39 chr6 60132254 60132663 -89384374 - RLTR21 LTR ERVK -519 1053 658 2 1043 1572 78 4 27 chr6 60132663 60132888 -89384149 - L1_Mus1 LINE L1 -1 6566 6347 2 1043 2028 125 3 0 chr6 60132888 60133201 -89383836 + L1_Mm LINE L1 4958 5271 -612 2 1043 2447 268 12 48 chr6 60133202 60133889 -89383148 - RLTR21 LTR ERVK -905 667 6 2 1043 21 36 0 0 chr6 60133998 60134026 -89383011 + AT_rich Low_complexity Low_complexity 1 28 0 2 1043 217 129 42 28 chr6 60134114 60134186 -89382851 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 1043 39706 31 5 6 chr6 60134206 60141005 -89376032 - L1Md_A LINE L1 0 6582 1 2 1043 374 272 175 16 chr6 60141262 60141456 -89375581 + RLTR12B LTR ERVK 1 225 -303 2 1043 2969 153 19 11 chr6 60141456 60141991 -89375046 + Lx LINE L1 5556 6094 -560 2 1043 595 197 8 32 chr6 60141966 60142092 -89374945 - Lx2B LINE L1 -228 6772 6650 2 1043 1970 218 25 17 chr6 60142090 60142566 -89374471 - Lx2B LINE L1 -605 6395 5916 2 1043 5702 103 23 6 chr6 60143182 60144022 -89373015 - L1Md_F2 LINE L1 -15 6567 5714 2 1043 2037 143 3 44 chr6 60144027 60144124 -89372913 - L1_Mus4 LINE L1 -698 5938 5845 2 1043 597 94 0 0 chr6 60144124 60144209 -89372828 + (TA)n Simple_repeat Simple_repeat 2 86 0 2 1043 924 162 0 0 chr6 60144213 60144355 -89372682 - B1_Mus1 SINE Alu -6 142 1 2 1043 4385 188 3 197 chr6 60144355 60144409 -89372628 - L1_Mus4 LINE L1 -42 5841 5797 2 1043 3933 84 21 2 chr6 60144409 60144943 -89372094 - L1_Mus1 LINE L1 0 6567 6024 2 1043 4385 188 3 197 chr6 60144943 60146332 -89370705 - L1_Mus4 LINE L1 -87 5796 4678 2 1043 967 129 0 45 chr6 60146330 60146481 -89370556 + L1_Mus4 LINE L1 5998 6146 -490 2 1043 1834 157 65 20 chr6 60146481 60146878 -89370159 + RLTR9F LTR ERVK 1 415 0 2 1043 967 129 0 45 chr6 60146878 60146904 -89370133 + L1_Mus4 LINE L1 6147 6166 -470 2 1043 2458 236 54 95 chr6 60147050 60147197 -89369840 + ETnERV2-int LTR ERVK 103 242 -4602 2 1043 333 62 0 0 chr6 60147197 60147245 -89369792 + (TTAAA)n Simple_repeat Simple_repeat 4 51 0 2 1043 8955 190 52 42 chr6 60147245 60150168 -89366869 + ETnERV2-int LTR ERVK 243 4090 -3316 2 1043 1380 57 20 15 chr6 60150168 60150366 -89366671 - L1Md_F3 LINE L1 0 6584 6386 2 1043 552 52 37 49 chr6 60150367 60150448 -89366589 + L1Md_F3 LINE L1 6296 6375 -209 2 1043 7792 178 33 26 chr6 60150448 60151334 -89365703 + ETnERV2-int LTR ERVK 3411 3866 -1540 2 1043 723 269 34 52 chr6 60151475 60151801 -89365236 - RLTR46 LTR ERVK 0 320 1 2 1043 9348 235 26 18 chr6 60151807 60154279 -89362758 - IAPEY3-int LTR ERVK -363 7317 5111 2 1043 5688 110 4 1 chr6 60154263 60155057 -89361980 - IAPEY3-int LTR ERVK -4781 2899 2104 2 1043 398 169 28 0 chr6 60155068 60155139 -89361898 - IAPEY3-int LTR ERVK -7362 318 246 2 1043 32511 67 8 24 chr6 60155349 60160335 -89356702 + L1Md_F2 LINE L1 606 5586 -297 2 1043 7826 56 2 5 chr6 60160335 60161330 -89355707 + L1Md_F2 LINE L1 5587 6578 -4 2 1043 15531 124 28 9 chr6 60161380 60161674 -89355363 + L1VL4 LINE L1 753 1045 -2514 2 1043 198 0 0 0 chr6 60161674 60161696 -89355341 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 130 15531 116 42 13 chr6 60161696 60164133 -89352904 + L1VL4 LINE L1 1046 3558 -1 2 1044 326 322 32 64 chr6 60164208 60164491 -89352546 + MYSERV6-int LTR ERVK 3990 4179 -4780 2 1044 3417 202 68 105 chr6 60164500 60165714 -89351323 + ETnERV2-int LTR ERVK 2 1169 -3675 2 1044 1363 211 89 27 chr6 60165713 60166083 -89350954 + ETnERV2-int LTR ERVK 2428 2820 -4586 2 1044 478 101 0 0 chr6 60166097 60166166 -89350871 + ETnERV2-int LTR ERVK 2919 2987 -4419 2 1044 3649 186 26 44 chr6 60166182 60167840 -89349197 + ETnERV2-int LTR ERVK 2351 4085 -3321 2 1044 505 235 0 19 chr6 60167875 60167979 -89349058 + ETnERV2-int LTR ERVK 6126 6227 -1179 2 1044 1417 143 15 14 chr6 60167982 60168232 -89348805 + ETnERV2-int LTR ERVK 6222 6426 -980 2 1044 389 94 0 59 chr6 60168330 60168398 -89348639 + RLTR45-int LTR ERVK 6009 6072 -1172 2 1044 1486 158 12 4 chr6 60168411 60168665 -89348372 + ETnERV3-int LTR ERVK 5529 5784 -24 2 1044 1101 181 15 10 chr6 60168682 60168883 -89348154 + RLTR13B1 LTR ERVK 4 205 -688 2 1044 31822 107 8 2 chr6 60168883 60174635 -89342402 - L1Md_F2 LINE L1 -22 6560 775 2 1044 852 289 71 124 chr6 60174659 60175571 -89341466 + MYSERV-int LTR ERVK 4255 5118 -1432 2 1044 329 304 27 88 chr6 60175577 60175725 -89341312 + RMER4A LTR ERVK 286 424 -42 2 1044 2879 248 52 76 chr6 60175758 60176962 -89340075 + MYSERV-int LTR ERVK 5336 6510 -40 2 1044 502 287 72 59 chr6 60176970 60177274 -89339763 + RLTR12B LTR ERVK 2 309 -219 2 1044 1353 208 51 54 chr6 60177593 60177943 -89339094 + ORR1C1 LTR MaLR 29 377 -1 2 1044 956 25 8 0 chr6 60179256 60179375 -89337662 + (GA)n Simple_repeat Simple_repeat 1 120 0 2 1044 792 243 40 84 chr6 60179375 60179672 -89337365 - RMER4B LTR ERVK -256 329 46 2 1044 785 247 26 36 chr6 60179672 60179865 -89337172 - Lx3B LINE L1 -230 6743 6553 2 1044 5279 138 28 12 chr6 60179869 60180764 -89336273 - Lx LINE L1 -4 6650 5742 2 1044 1339 84 35 74 chr6 60180764 60180872 -89336165 + MTB-int LTR MaLR 852 951 -147 2 1044 1361 70 26 26 chr6 60180872 60180904 -89336133 - B2_Mm1t SINE B2 0 193 161 2 1044 279 0 0 0 chr6 60180904 60180935 -89336102 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2 1044 1361 70 26 26 chr6 60180935 60181094 -89335943 - B2_Mm1t SINE B2 -33 160 2 2 1044 1339 84 35 74 chr6 60181094 60181242 -89335795 + MTB-int LTR MaLR 952 1098 0 2 1044 2975 80 5 0 chr6 60181242 60181640 -89335397 + MTB LTR MaLR 1 400 0 2 1044 1758 172 3 6 chr6 60181640 60181984 -89335053 - Lx LINE L1 -577 5306 4964 2 1044 482 191 0 11 chr6 60181988 60182078 -89334959 - Lx3B LINE L1 -414 6559 6471 2 1044 1875 162 35 0 chr6 60182080 60182426 -89334611 - L1_Mur1 LINE L1 -264 5622 5265 2 1044 870 235 16 33 chr6 60182403 60182682 -89334355 - L1_Mur1 LINE L1 -6125 859 666 2 1044 578 240 76 67 chr6 60183022 60183245 -89333792 + RLTR12B LTR ERVK 42 266 -262 2 1044 454 177 8 0 chr6 60183428 60183522 -89333515 - L1_Mus3 LINE L1 -120 6516 6420 2 1044 584 134 14 69 chr6 60183627 60183771 -89333266 + L1_Mus3 LINE L1 6497 6632 -6 2 1044 4991 103 51 1 chr6 60183918 60184704 -89332333 - RLTR22_Mus LTR ERVK -983 825 1 2 1044 198 0 0 0 chr6 60184713 60184735 -89332302 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 2 1044 1434 271 70 43 chr6 60184760 60185346 -89331691 + MYSERV6-int LTR ERVK 8358 8959 0 2 1044 207 0 0 0 chr6 60185456 60185479 -89331558 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1044 12582 187 31 78 chr6 60185489 60188491 -89328546 - L1_Mus3 LINE L1 -4 6634 3730 2 1044 874 127 0 0 chr6 60188491 60188617 -89328420 - BGLII_B LTR ERVK -41 400 275 2 1044 12582 187 31 78 chr6 60188617 60189851 -89327186 - L1_Mus3 LINE L1 -4 3729 2534 2 1044 31521 91 15 1 chr6 60189873 60196033 -89321004 - L1Md_F2 LINE L1 -5 6577 327 2 1044 1415 187 36 62 chr6 60196766 60197103 -89319934 + ORR1A4 LTR MaLR 1 328 -1 2 1044 435 285 108 40 chr6 60198183 60198461 -89318576 - Lx8 LINE L1 0 7473 7177 2 1044 932 195 24 47 chr6 60198526 60198777 -89318260 - Lx LINE L1 -8 6646 6411 2 1044 676 309 37 53 chr6 60198782 60199161 -89317876 - Lx8 LINE L1 -349 7124 6752 2 1044 1326 278 79 24 chr6 60199164 60199845 -89317192 - L1_Mur3 LINE L1 -1306 4574 3856 2 1044 693 347 16 0 chr6 60200295 60200546 -89316491 + Lx8 LINE L1 6722 6976 -497 2 1044 863 78 0 0 chr6 60200785 60200901 -89316136 + 5S rRNA rRNA 1 116 -5 2 1044 210 71 0 0 chr6 60200901 60200929 -89316108 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1044 957 113 0 27 chr6 60200929 60201075 -89315962 + B1_Mm SINE Alu 1 142 -5 2 1044 462 61 0 0 chr6 60201081 60201147 -89315890 + (A)n Simple_repeat Simple_repeat 1 66 0 2 1044 1112 104 12 0 chr6 60201148 60201312 -89315725 + B2_Mm1t SINE B2 21 186 -7 2 1044 632 297 22 41 chr6 60201374 60201742 -89315295 - L1_Mur3 LINE L1 -2922 2958 2598 2 1044 583 267 34 53 chr6 60202556 60202762 -89314275 + RMER15 LTR ERVL 365 566 -9 2 1044 405 0 0 0 chr6 60203486 60203531 -89313506 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1044 251 338 28 14 chr6 60203724 60203865 -89313172 + B1F SINE Alu 2 144 -5 2 1044 845 255 250 21 chr6 60204186 60204618 -89312419 + MT2A LTR ERVL 3 533 0 2 1044 810 94 0 0 chr6 60204638 60204755 -89312282 + (GA)n Simple_repeat Simple_repeat 2 118 0 2 1044 488 295 6 55 chr6 60204758 60204923 -89312114 + ORR1D-int LTR MaLR 1010 1166 -204 2 1044 387 0 0 0 chr6 60204940 60204983 -89312054 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1044 186 43 0 0 chr6 60204983 60205005 -89312032 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1044 645 14 0 0 chr6 60205005 60205078 -89311959 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1044 234 0 0 0 chr6 60205078 60205103 -89311934 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 1044 444 258 31 0 chr6 60205146 60205274 -89311763 + ORR1D-int LTR MaLR 1168 1299 -71 2 1044 37 23 0 0 chr6 60205289 60205333 -89311704 + AT_rich Low_complexity Low_complexity 1 44 0 2 1044 832 264 59 56 chr6 60205359 60205492 -89311545 - Lx2B LINE L1 -157 6843 6711 2 1044 3398 157 61 38 chr6 60205492 60205842 -89311195 - RMER17A LTR ERVK 0 751 419 2 1044 601 47 24 0 chr6 60205842 60205927 -89311110 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 1044 3398 157 61 38 chr6 60205927 60206310 -89310727 - RMER17A LTR ERVK -333 418 3 2 1044 832 264 59 56 chr6 60206310 60206481 -89310556 - Lx2B LINE L1 -290 6710 6538 2 1044 6592 130 12 7 chr6 60206663 60207700 -89309337 - L1_Mus3 LINE L1 -9 6629 5587 2 1044 5929 126 8 38 chr6 60207707 60207973 -89309064 + L1_Mus2 LINE L1 5584 5828 -336 2 1044 1049 110 0 0 chr6 60207973 60208118 -89308919 - B1_Mus2 SINE Alu -2 145 1 2 1044 5929 104 4 42 chr6 60208118 60208799 -89308238 + L1_Mus2 LINE L1 5809 6468 -98 2 1044 1659 209 55 33 chr6 60208796 60209286 -89307751 + L1_Mur2 LINE L1 3343 3843 -2034 2 1044 35500 47 0 3 chr6 60209298 60214778 -89302259 + L1Md_T LINE L1 30 5587 -299 2 1044 8421 33 0 0 chr6 60214780 60215776 -89301261 + L1Md_T LINE L1 5590 6585 0 2 1044 1034 205 36 0 chr6 60215777 60216026 -89301011 + L1_Mur2 LINE L1 3842 4099 -1778 2 1044 21 36 0 0 chr6 60216266 60216294 -89300743 + AT_rich Low_complexity Low_complexity 1 28 0 2 1044 201 94 56 19 chr6 60216316 60216370 -89300667 + (TTATA)n Simple_repeat Simple_repeat 2 57 0 2 1044 221 28 83 0 chr6 60216699 60216735 -89300302 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1044 1759 194 67 30 chr6 60218455 60218859 -89298178 - BGLII_Mus LTR ERVK 0 422 4 2 1044 1538 242 6 9 chr6 60218940 60219282 -89297755 + ORR1B1 LTR MaLR 1 341 -53 2 1044 5210 246 66 65 chr6 60219326 60221365 -89295672 + ORR1B1-int LTR MaLR 31 1766 -197 2 1044 1501 275 16 13 chr6 60221365 60221748 -89295289 + ORR1B1 LTR MaLR 1 384 -10 2 1044 335 253 92 0 chr6 60221753 60221840 -89295197 + B1_Mur3 SINE Alu 18 112 -37 2 1044 506 245 0 19 chr6 60221787 60221941 -89295096 + ORR1B1-int LTR MaLR 781 931 -1032 2 1044 342 231 34 3 chr6 60221943 60222024 -89295013 + ORR1A3-int LTR MaLR 1316 1376 -587 2 1044 228 289 101 47 chr6 60222052 60222201 -89294836 + Lx8 LINE L1 6128 6284 -1189 2 1044 242 197 28 0 chr6 60222334 60222405 -89294632 + (TCTG)n Simple_repeat Simple_repeat 4 76 0 2 1044 433 0 35 0 chr6 60222478 60222535 -89294502 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2 1044 208 0 62 0 chr6 60222680 60222712 -89294325 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1044 504 313 91 31 chr6 60222885 60223172 -89293865 + L1VL2 LINE L1 96 399 -5936 2 1044 2959 157 11 53 chr6 60223281 60224450 -89292587 + L1Md_F LINE L1 667 1778 -4105 2 1044 24 0 0 0 chr6 60224683 60224707 -89292330 + AT_rich Low_complexity Low_complexity 1 24 0 2 1044 5797 187 17 11 chr6 60225234 60226890 -89290147 + Lx LINE L1 4982 6650 -4 2 1044 192 125 0 0 chr6 60227061 60227093 -89289944 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2 1044 51 85 0 18 chr6 60227254 60227422 -89289615 + AT_rich Low_complexity Low_complexity 1 165 0 2 1044 372 338 54 36 chr6 60228822 60228988 -89288049 + B3 SINE B2 47 215 -1 2 1044 327 281 26 17 chr6 60230900 60231016 -89286021 + CT-rich Low_complexity Low_complexity 4 120 0 3 1044 860 203 64 5 chr6 60231044 60231247 -89285790 + ORR1C2 LTR MaLR 168 382 -2 3 1044 1157 212 108 88 chr6 60231479 60231842 -89285195 + RMER4A LTR ERVK 3 344 -122 3 1044 926 99 6 0 chr6 60231842 60232004 -89285033 + (TC)n Simple_repeat Simple_repeat 1 163 0 3 1044 246 32 0 0 chr6 60232004 60232034 -89285003 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1044 1157 212 108 88 chr6 60232034 60232124 -89284913 + RMER4A LTR ERVK 345 465 -1 3 1044 196 53 26 26 chr6 60233227 60233266 -89283771 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1044 751 253 39 29 chr6 60233344 60233593 -89283444 - ORR1C1 LTR MaLR 0 378 104 3 1044 251 54 27 0 chr6 60233841 60233878 -89283159 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 3 1044 264 343 14 12 chr6 60234175 60234317 -89282720 - MuRRS4-int LTR ERV1 -2015 5586 5434 3 1044 1460 297 25 12 chr6 60234505 60235033 -89282004 - MuRRS4-int LTR ERV1 -1048 4015 3545 3 1044 433 223 166 0 chr6 60236363 60236520 -89280517 - RLTR47_MM LTR ERV1 0 532 350 3 1044 389 217 65 42 chr6 60236528 60236696 -89280341 - MYSERV-int LTR ERVK -1042 5508 5337 3 1044 371 341 61 6 chr6 60236726 60236891 -89280146 - RMER4A LTR ERVK -43 423 250 3 1044 957 295 116 41 chr6 60237271 60238005 -89279032 - MYSERV-int LTR ERVK -1781 4769 3981 3 1044 1177 223 72 0 chr6 60238046 60238324 -89278713 + MurERV4_19-int LTR ERVK 893 1190 -4590 3 1044 412 132 36 0 chr6 60238324 60238407 -89278630 - L1_Mus2 LINE L1 -29 6537 6452 3 1044 264 32 0 0 chr6 60238408 60238455 -89278582 + L1_Mus2 LINE L1 6526 6566 0 3 1044 6043 203 10 1 chr6 60238546 60239779 -89277258 + MurERV4_19-int LTR ERVK 1179 2422 -3358 3 1044 241 257 8 58 chr6 60239905 60240025 -89277012 - Lx9 LINE L1 0 7644 7531 3 1044 29 70 0 0 chr6 60240078 60240135 -89276902 + AT_rich Low_complexity Low_complexity 1 57 0 3 1044 358 327 107 38 chr6 60241269 60241428 -89275609 + B3 SINE B2 45 214 -2 3 1044 1300 96 27 0 chr6 60241474 60241662 -89275375 - B2_Mm2 SINE B2 -1 194 2 3 1044 478 0 32 0 chr6 60242981 60243043 -89273994 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1044 180 0 0 0 chr6 60243688 60243708 -89273329 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1044 24 77 0 0 chr6 60243826 60243878 -89273159 + AT_rich Low_complexity Low_complexity 1 52 0 3 1044 3197 143 14 14 chr6 60244149 60244709 -89272328 + Lx LINE L1 5589 6148 -506 3 1044 680 103 0 9 chr6 60244778 60244886 -89272151 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 3 1044 223 125 42 0 chr6 60245368 60245416 -89271621 + T-rich Low_complexity Low_complexity 4 53 0 3 1044 369 380 6 19 chr6 60245708 60245869 -89271168 - B3 SINE B2 -6 210 52 3 1044 1171 275 36 57 chr6 60246041 60246076 -89270961 + ORR1C1 LTR MaLR 1 35 -343 3 1044 657 0 0 0 chr6 60246076 60246149 -89270888 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 1044 1171 275 36 57 chr6 60246149 60246499 -89270538 + ORR1C1 LTR MaLR 36 376 -2 3 1044 1043 82 0 40 chr6 60246556 60246708 -89270329 - B1_Mm SINE Alu 0 147 2 3 1044 684 212 0 0 chr6 60246803 60246935 -89270102 - URR1A DNA MER1_type -1 225 94 3 1044 392 284 37 43 chr6 60246935 60246960 -89270077 + CYRA11_Mm Unknown Y-chromosome 173 328 -289 3 1044 249 128 0 0 chr6 60248825 60248872 -89268165 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1044 1001 270 19 26 chr6 60248885 60249155 -89267882 + ORR1B1 LTR MaLR 1 268 -126 3 1044 37783 3 0 0 chr6 60249155 60254282 -89262755 + L1Md_A LINE L1 376 5503 -380 3 1044 402 276 32 105 chr6 60254282 60254365 -89262672 + ORR1B1 LTR MaLR 94 169 -177 3 1044 8984 4 0 0 chr6 60254365 60255361 -89261676 + L1Md_A LINE L1 5587 6582 0 3 1044 614 211 39 1 chr6 60255361 60255519 -89261518 + ORR1B1 LTR MaLR 187 367 0 3 1044 3386 256 46 45 chr6 60255519 60256670 -89260367 + ORR1B1-int LTR MaLR 1 1152 -811 3 1044 2348 118 44 5 chr6 60256675 60257065 -89259972 + L1_Mus4 LINE L1 6230 6634 -2 3 1044 671 230 103 65 chr6 60257087 60257301 -89259736 - RMER19B LTR ERVK -373 529 308 3 1044 746 195 26 26 chr6 60257321 60257516 -89259521 - MurERV4_19-int LTR ERVK 0 5780 5586 3 1044 219 36 0 0 chr6 60257531 60257559 -89259478 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 1044 1311 38 0 0 chr6 60257559 60257719 -89259318 - B2_Mm1t SINE B2 -33 160 1 3 1044 347 96 13 52 chr6 60257790 60257867 -89259170 - Lx2A1 LINE L1 -10 6998 6925 3 1044 2812 217 18 26 chr6 60257867 60258157 -89258880 - Lx2B LINE L1 -734 6266 5977 3 1044 3985 156 71 86 chr6 60258157 60258629 -89258408 - RMER17A2 LTR ERVK 0 906 443 3 1044 540 0 0 0 chr6 60258629 60258689 -89258348 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1044 3985 156 71 86 chr6 60258689 60259136 -89257901 - RMER17A2 LTR ERVK -464 442 2 3 1044 2812 222 19 26 chr6 60259136 60259559 -89257478 - Lx2B LINE L1 -1024 5976 5587 3 1044 3512 174 12 23 chr6 60259558 60259798 -89257239 - Lx2B LINE L1 -492 5385 5144 3 1044 216 0 0 0 chr6 60259798 60259822 -89257215 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1044 3512 174 12 23 chr6 60259822 60260315 -89256722 - Lx2B LINE L1 -734 5143 4661 3 1044 663 13 0 0 chr6 60260328 60260404 -89256633 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 1044 21 0 0 0 chr6 60261499 60261520 -89255517 + AT_rich Low_complexity Low_complexity 1 21 0 3 1044 4129 54 8 21 chr6 60262118 60262999 -89254038 + L1Md_Gf LINE L1 1 604 -5918 3 1044 35311 36 0 0 chr6 60263019 60268723 -89248314 + L1Md_T LINE L1 1 5589 -297 3 1044 8938 6 0 0 chr6 60268723 60269718 -89247319 + L1Md_T LINE L1 5590 6584 -1 3 1044 204 40 0 0 chr6 60269732 60269757 -89247280 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1044 339 321 90 25 chr6 60269927 60270088 -89246949 - B3 SINE B2 0 216 47 3 1044 3151 159 58 8 chr6 60270753 60271355 -89245682 - Lx3_Mus LINE L1 -11 6998 6367 3 1044 1098 135 0 21 chr6 60271355 60271538 -89245499 + Lx3A LINE L1 5818 5997 -984 3 1044 2991 53 0 0 chr6 60271539 60271896 -89245141 + IAPEY2_LTR LTR ERVK 1 357 0 3 1044 541 123 0 0 chr6 60271896 60271977 -89245060 - Lx LINE L1 -562 6447 6367 3 1044 2997 128 6 66 chr6 60271976 60272521 -89244516 + Lx3_Mus LINE L1 5817 6328 -681 3 1044 2978 137 11 0 chr6 60272959 60273411 -89243626 - Lx LINE L1 -430 6224 5768 3 1044 1349 274 99 31 chr6 60274547 60274890 -89242147 - RLTR21 LTR ERVK -136 1436 1112 3 1044 207 0 0 0 chr6 60274890 60274913 -89242124 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1044 1349 257 114 38 chr6 60274913 60275336 -89241701 - RLTR21 LTR ERVK -461 1111 675 3 1044 4635 125 32 1 chr6 60275343 60276118 -89240919 - L1Md_F LINE L1 -5450 1274 480 3 1044 924 203 92 13 chr6 60276117 60276344 -89240693 - L1VL1 LINE L1 -6177 245 1 3 1044 1954 193 37 4 chr6 60276343 60276835 -89240202 - L1Md_F LINE L1 -2649 1249 739 3 1044 1287 300 52 44 chr6 60276957 60277456 -89239581 - RMER19C LTR ERVK -2 609 107 3 1044 781 189 51 50 chr6 60277488 60277822 -89239215 - MurERV4_19-int LTR ERVK -2 5778 5468 3 1044 4450 235 75 20 chr6 60277861 60278685 -89238352 - Lx2B LINE L1 -91 6909 6037 3 1044 3721 166 31 60 chr6 60278685 60279518 -89237519 + RMER17D2 LTR ERVK 1 809 0 3 1044 4450 235 75 20 chr6 60279518 60279662 -89237375 - Lx2B LINE L1 -964 6036 5878 3 1044 3062 35 50 0 chr6 60279662 60280039 -89236998 + MTA_Mm LTR MaLR 1 396 0 3 1044 4450 235 75 20 chr6 60280039 60280323 -89236714 - Lx2B LINE L1 -1123 5877 5587 3 1044 341 254 18 0 chr6 60280347 60280457 -89236580 - Lx2B LINE L1 -484 5402 5291 3 1044 3626 103 2 2 chr6 60280460 60280968 -89236069 - L1_Mus1 LINE L1 0 6567 6060 3 1044 9080 109 40 4 chr6 60281006 60282623 -89234414 + L1_Mus1 LINE L1 4403 6069 -498 3 1044 1399 216 132 5 chr6 60282617 60283012 -89234025 - Lx2B LINE L1 -581 5305 4848 3 1044 13808 190 40 34 chr6 60283098 60284945 -89232092 - MurERV4_19-int LTR ERVK -561 5219 3337 3 1044 984 98 0 0 chr6 60284945 60285077 -89231960 + B1_Mm SINE Alu 2 133 -14 3 1044 13808 190 40 34 chr6 60285077 60286437 -89230600 - MurERV4_19-int LTR ERVK -2444 3336 1993 3 1044 3800 112 47 2 chr6 60286441 60287043 -89229994 - L1Md_F2 LINE L1 -12 6570 5942 3 1044 1926 82 0 0 chr6 60287043 60287300 -89229737 + L1Md_F2 LINE L1 5707 5963 -619 3 1044 416 157 48 0 chr6 60287302 60287385 -89229652 - MurERV4_19-int LTR ERVK -3780 2000 1914 3 1044 24 32 0 0 chr6 60287436 60287467 -89229570 + AT_rich Low_complexity Low_complexity 1 31 0 3 1044 30 83 0 0 chr6 60287555 60287627 -89229410 + AT_rich Low_complexity Low_complexity 1 72 0 3 1044 3613 201 67 0 chr6 60287769 60288625 -89228412 + L1_Mur2 LINE L1 4252 5164 -713 3 1044 474 228 16 0 chr6 60288625 60288752 -89228285 + Lx2 LINE L1 6858 6986 -11 3 1044 981 313 62 63 chr6 60288803 60289576 -89227461 + MYSERV-int LTR ERVK 4256 4769 -1781 3 1044 735 174 0 0 chr6 60289579 60289728 -89227309 + CT-rich Low_complexity Low_complexity 3 151 0 3 1044 21 57 0 0 chr6 60289728 60289763 -89227274 + AT_rich Low_complexity Low_complexity 1 35 0 3 1044 1032 242 92 11 chr6 60289773 60290120 -89226917 + MYSERV-int LTR ERVK 6161 6535 -15 3 1044 529 217 67 0 chr6 60290247 60290367 -89226670 - RMER4B LTR ERVK 0 585 458 3 1044 1165 234 40 48 chr6 60290420 60290774 -89226263 - RMER4B LTR ERVK -234 351 1 3 1044 28 61 0 0 chr6 60290863 60290912 -89226125 + AT_rich Low_complexity Low_complexity 1 49 0 3 1044 405 0 0 0 chr6 60291965 60292010 -89225027 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1044 282 338 128 14 chr6 60292537 60292678 -89224359 - B3 SINE B2 0 216 60 3 1045 207 69 0 0 chr6 60293916 60293945 -89223092 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 1045 201 250 45 39 chr6 60294104 60294283 -89222754 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 3 1045 26 50 0 0 chr6 60294769 60294809 -89222228 + AT_rich Low_complexity Low_complexity 1 40 0 3 1045 1785 137 110 51 chr6 60295374 60295766 -89221271 - RLTR9F LTR ERVK 0 415 1 3 1045 7981 181 43 45 chr6 60296057 60297159 -89219878 - ETnERV2-int LTR ERVK -1534 3872 3192 3 1045 405 0 0 0 chr6 60297159 60297204 -89219833 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1045 8584 185 55 52 chr6 60297204 60299959 -89217078 - ETnERV2-int LTR ERVK -3308 4098 252 3 1045 378 42 0 0 chr6 60299959 60300007 -89217030 + (TTTTA)n Simple_repeat Simple_repeat 4 51 0 3 1045 1115 249 70 88 chr6 60300007 60300327 -89216710 - ETnERV2-int LTR ERVK -2994 320 3 3 1045 897 182 0 19 chr6 60300335 60300497 -89216540 - RLTR9D LTR ERVK -22 381 223 3 1045 9306 42 3 0 chr6 60300497 60301651 -89215386 - L1_Mm LINE L1 -1016 4867 3711 3 1045 239 151 27 0 chr6 60302169 60302242 -89214795 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 3 1045 456 19 0 0 chr6 60302741 60302794 -89214243 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1045 783 53 0 0 chr6 60302859 60303016 -89214021 - L1Md_A LINE L1 0 6582 6470 3 1045 246 137 0 0 chr6 60303016 60303022 -89214015 + (T)n Simple_repeat Simple_repeat 1 6 0 3 1045 194 91 30 0 chr6 60303079 60303112 -89213925 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 3 1045 603 270 143 21 chr6 60303390 60303628 -89213409 - RMER15 LTR ERVL -15 560 294 3 1045 718 289 16 104 chr6 60304402 60304859 -89212178 + L1_Mur3 LINE L1 2598 3011 -2869 3 1045 7017 99 25 1 chr6 60304859 60305856 -89211181 - RLTR13D5 LTR ERVK -2 1021 1 3 1045 718 289 16 104 chr6 60305856 60305966 -89211071 + L1_Mur3 LINE L1 3012 3115 -2765 3 1045 710 354 30 4 chr6 60306032 60306377 -89210660 - Lx8 LINE L1 -451 7022 6660 3 1045 819 101 0 0 chr6 60306580 60306699 -89210338 + (TA)n Simple_repeat Simple_repeat 2 120 0 4 1045 2035 182 148 40 chr6 60307906 60308432 -89208605 + RMER16-int LTR ERVK 237 819 -4587 4 1045 565 209 26 0 chr6 60308437 60308552 -89208485 + RMER16-int LTR ERVK 938 1055 -5082 4 1045 5451 168 117 11 chr6 60308529 60309857 -89207180 + ETnERV2-int LTR ERVK 2485 4000 -3406 4 1045 4680 177 64 19 chr6 60309848 60310887 -89206150 + ETnERV3-int LTR ERVK 3584 5384 -424 4 1045 1235 48 42 0 chr6 60310916 60311083 -89205954 + RLTR13D5 LTR ERVK 291 464 -559 4 1045 351 329 24 12 chr6 60311354 60311520 -89205517 + ETnERV3-int LTR ERVK 6355 6522 -722 4 1045 401 252 44 44 chr6 60311573 60311710 -89205327 + ETnERV3-int LTR ERVK 6496 6632 -774 4 1045 810 277 109 9 chr6 60312699 60313147 -89203890 + L1_Mur3 LINE L1 3917 4409 -1471 4 1045 2921 129 22 40 chr6 60313150 60313674 -89203363 + RMER17A LTR ERVK 1 514 -237 4 1045 3826 189 57 25 chr6 60313674 60314504 -89202533 - RLTR13D6 LTR ERVK -2 900 45 4 1045 1172 137 16 92 chr6 60314517 60314767 -89202270 + RMER17A LTR ERVK 521 751 0 4 1045 392 208 29 29 chr6 60314842 60314946 -89202091 + L1_Mur3 LINE L1 4481 4584 -1296 4 1045 720 298 28 43 chr6 60315001 60315327 -89201710 + Lx8 LINE L1 6806 7126 -347 4 1045 990 224 26 9 chr6 60315338 60315568 -89201469 + Lx LINE L1 6420 6653 -1 4 1045 465 321 88 42 chr6 60315596 60315902 -89201135 + Lx8 LINE L1 7154 7473 0 4 1045 1577 178 26 62 chr6 60317016 60317357 -89199680 - ORR1A4 LTR MaLR 0 329 1 4 1045 3814 134 19 5 chr6 60318328 60318949 -89198088 - L1_Mus3 LINE L1 -2 6636 6007 4 1045 1046 100 159 65 chr6 60318949 60319066 -89197971 + RMER16-int LTR ERVK 566 699 -4707 4 1045 867 128 0 0 chr6 60319066 60319230 -89197807 + (GAAA)n Simple_repeat Simple_repeat 1 164 0 4 1045 1046 100 159 65 chr6 60319230 60319326 -89197711 + RMER16-int LTR ERVK 700 798 -4608 4 1045 449 248 0 67 chr6 60319326 60319454 -89197583 + ORR1C2 LTR MaLR 75 183 -201 4 1045 2885 178 38 2 chr6 60319459 60319987 -89197050 - L1_Mus4 LINE L1 -6 6630 6084 4 1045 30 27 0 0 chr6 60320462 60320499 -89196538 + AT_rich Low_complexity Low_complexity 1 37 0 4 1045 183 114 0 0 chr6 60320612 60320647 -89196390 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1045 1057 235 8 17 chr6 60320663 60320901 -89196136 + ORR1B1 LTR MaLR 1 236 -158 4 1045 5252 248 37 61 chr6 60320915 60322544 -89194493 + ORR1B1-int LTR MaLR 182 1771 -192 4 1045 205 178 0 0 chr6 60322544 60322589 -89194448 + T-rich Low_complexity Low_complexity 1 45 0 4 1045 189 0 0 0 chr6 60322590 60322611 -89194426 + (TTG)n Simple_repeat Simple_repeat 2 22 0 4 1045 1307 174 68 0 chr6 60322617 60322871 -89194166 + ORR1B1-int LTR MaLR 1219 1500 -9 4 1045 1284 273 44 23 chr6 60322881 60323267 -89193770 + ORR1B1 LTR MaLR 1 394 0 4 1045 393 265 67 19 chr6 60323267 60323360 -89193677 + B1_Mur3 SINE Alu 18 117 -32 4 1045 566 219 0 38 chr6 60323301 60323458 -89193579 + ORR1A3-int LTR MaLR 781 931 -1032 4 1045 362 218 27 0 chr6 60323453 60323533 -89193504 + ORR1A3-int LTR MaLR 1314 1376 -587 4 1045 285 164 0 0 chr6 60323918 60323991 -89193046 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 4 1045 278 320 12 89 chr6 60324325 60324493 -89192544 - Lx9 LINE L1 -405 7239 7085 4 1045 474 383 35 35 chr6 60324489 60324827 -89192210 - Lx9 LINE L1 -932 6712 6375 4 1045 321 102 0 0 chr6 60325509 60325558 -89191479 + L1VL2 LINE L1 443 491 -5844 4 1045 6956 133 45 12 chr6 60325627 60326464 -89190573 + MusHAL1 LINE L1 753 1611 -1101 4 1045 459 78 0 0 chr6 60326464 60326528 -89190509 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1045 6956 133 45 12 chr6 60326528 60326981 -89190056 + MusHAL1 LINE L1 1612 2085 -627 4 1045 343 119 15 15 chr6 60327049 60327117 -89189920 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 4 1045 24 32 0 0 chr6 60327197 60327228 -89189809 + AT_rich Low_complexity Low_complexity 1 31 0 4 1045 225 309 20 40 chr6 60328392 60328493 -89188544 + MURVY-LTR LTR ERV1 15 113 -406 4 1045 661 311 9 19 chr6 60329196 60329409 -89187628 - B3 SINE B2 -5 211 1 4 1045 21 36 0 0 chr6 60329921 60329949 -89187088 + AT_rich Low_complexity Low_complexity 1 28 0 4 1045 1160 43 0 0 chr6 60330371 60330509 -89186528 + B1_Mus1 SINE Alu 2 139 -9 4 1045 236 30 0 29 chr6 60330509 60330543 -89186494 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1045 817 283 32 31 chr6 60330735 60331186 -89185851 - L1_Mur3 LINE L1 -2814 3063 2588 4 1045 230 355 17 43 chr6 60331399 60331508 -89185529 + PB1D10 SINE Alu 3 109 -8 4 1045 321 47 0 0 chr6 60331508 60331551 -89185486 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 4 1045 3151 61 2 10 chr6 60331556 60331972 -89185065 - L1Md_F2 LINE L1 -14 6568 6156 4 1045 28148 105 7 9 chr6 60331972 60336953 -89180084 - L1Md_F2 LINE L1 -699 5184 214 4 1045 518 279 98 27 chr6 60337432 60337616 -89179421 + RMER15 LTR ERVL 362 558 -17 4 1045 291 54 0 0 chr6 60338325 60338362 -89178675 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1045 842 237 10 10 chr6 60338431 60338623 -89178414 + ORR1D2-int LTR MaLR 1174 1365 -5 4 1045 800 332 78 12 chr6 60338626 60338970 -89178067 + ORR1D2 LTR MaLR 2 368 -2 4 1045 1111 75 7 0 chr6 60338971 60339117 -89177920 + B1_Mus2 SINE Alu 1 147 0 4 1045 313 81 32 0 chr6 60339125 60339187 -89177850 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 4 1045 1799 208 32 22 chr6 60339832 60340405 -89176632 + MusHAL1 LINE L1 876 1458 -2240 4 1045 1068 106 0 0 chr6 60340405 60340546 -89176491 + B1_Mus1 SINE Alu 2 142 -6 4 1045 1799 209 22 20 chr6 60340546 60340577 -89176460 + MusHAL1 LINE L1 1459 1490 -2208 4 1045 1585 196 101 19 chr6 60340723 60341432 -89175605 - Lx3A LINE L1 -1062 5996 5506 4 1045 967 261 72 25 chr6 60341483 60341883 -89175154 - MYSERV-int LTR ERVK -633 5917 5499 4 1045 207 0 0 0 chr6 60341900 60341923 -89175114 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 1045 353 228 29 29 chr6 60342418 60342558 -89174479 - MYSERV-int LTR ERVK -1075 5475 5336 4 1045 413 304 52 33 chr6 60342570 60342723 -89174314 - RMER4A LTR ERVK -19 447 292 4 1045 2105 88 6 50 chr6 60342778 60343115 -89173922 - RLTRETN_Mm LTR ERVK 0 322 1 4 1045 295 326 42 56 chr6 60343191 60343334 -89173703 - MYSERV-int LTR ERVK -1519 5031 4891 4 1045 6965 75 10 23 chr6 60343345 60344658 -89172379 - L1Md_F2 LINE L1 0 6582 5294 4 1045 3421 89 4 58 chr6 60344654 60345193 -89171844 + L1_Mm LINE L1 3301 3810 -2073 4 1045 321 26 0 0 chr6 60345383 60345421 -89171616 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1045 3965 237 31 46 chr6 60345646 60346752 -89170285 + RLTR21 LTR ERVK 1 1089 -483 4 1045 222 37 0 0 chr6 60346759 60346786 -89170251 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1045 287 325 50 17 chr6 60346848 60346967 -89170070 + RMER12B LTR ERVK 1282 1404 0 4 1045 4182 203 57 37 chr6 60348090 60349901 -89167136 + Lx LINE L1 4984 6831 -166 4 1045 2498 174 74 10 chr6 60349891 60350378 -89166659 + Lx LINE L1 6131 6648 -6 4 1045 36 53 0 0 chr6 60350751 60350808 -89166229 + AT_rich Low_complexity Low_complexity 1 57 0 4 1045 286 74 37 0 chr6 60351054 60351108 -89165929 + (TTTTG)n Simple_repeat Simple_repeat 1 56 0 4 1045 1106 82 0 20 chr6 60351108 60351258 -89165779 - B1_Mm SINE Alu 0 147 1 4 1045 22 0 0 0 chr6 60352172 60352194 -89164843 + AT_rich Low_complexity Low_complexity 1 22 0 4 1045 283 336 106 7 chr6 60352212 60352353 -89164684 + B3 SINE B2 57 211 -5 4 1045 482 250 38 13 chr6 60352400 60352558 -89164479 + Lx LINE L1 6490 6651 -3 4 1045 399 149 0 0 chr6 60352939 60353013 -89164024 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1045 22 56 0 0 chr6 60353363 60353399 -89163638 + AT_rich Low_complexity Low_complexity 1 36 0 4 1045 342 293 17 8 chr6 60354353 60354470 -89162567 - L1M2 LINE L1 -2368 3775 3658 4 1045 369 0 0 0 chr6 60354470 60354511 -89162526 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1045 519 31 0 0 chr6 60354511 60354575 -89162462 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1045 11139 142 48 28 chr6 60354575 60355348 -89161689 - MusHAL1 LINE L1 -296 2416 1685 4 1045 1071 75 0 0 chr6 60355348 60355494 -89161543 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 4 1045 11139 142 48 28 chr6 60355494 60356937 -89160100 - MusHAL1 LINE L1 -1028 1684 158 4 1045 1862 160 69 28 chr6 60356937 60357330 -89159707 + RLTR9E LTR ERVK 1 409 0 4 1045 1153 226 38 148 chr6 60357332 60357866 -89159171 + MMETn-int LTR ERVK 2 476 -4368 4 1045 1608 103 13 0 chr6 60357848 60358080 -89158957 + MMETn-int LTR ERVK 3777 4011 -3395 4 1045 3163 213 27 72 chr6 60358080 60359167 -89157870 + MMETn-int LTR ERVK 2351 3141 -1703 4 1045 1365 179 20 32 chr6 60359136 60359519 -89157518 + MMETn-int LTR ERVK 6222 6451 -955 4 1045 311 141 0 59 chr6 60359588 60359656 -89157381 + RLTR45-int LTR ERVK 6009 6072 -1172 4 1045 1266 163 71 4 chr6 60359669 60359909 -89157128 + ETnERV3-int LTR ERVK 5529 5784 -24 4 1045 1870 181 86 12 chr6 60359916 60360387 -89156650 + RLTR13D6 LTR ERVK 1 539 -363 4 1045 447 107 13 26 chr6 60360387 60360464 -89156573 + MMETn-int LTR ERVK 7331 7406 0 4 1045 1971 159 50 30 chr6 60360464 60360865 -89156172 + RLTR9E LTR ERVK 1 409 0 4 1045 3464 219 47 66 chr6 60360865 60362108 -89154929 - L1VL2 LINE L1 -2551 1064 26 4 1045 1055 155 27 0 chr6 60362160 60362347 -89154690 - B2_Mm2 SINE B2 -1 194 3 4 1045 311 327 86 26 chr6 60362394 60362545 -89154492 - B3 SINE B2 -6 210 51 4 1045 6117 209 22 23 chr6 60362545 60362688 -89154349 + Lx LINE L1 4488 4630 -1253 4 1045 209 33 0 32 chr6 60362688 60362719 -89154318 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 4 1045 6117 209 22 23 chr6 60362719 60363533 -89153504 + Lx LINE L1 4631 5449 -434 4 1045 2381 132 5 5 chr6 60363533 60363921 -89153116 + L1_Mus3 LINE L1 6251 6638 0 4 1045 6117 167 41 22 chr6 60363921 60365105 -89151932 + Lx LINE L1 5450 6654 0 4 1045 247 65 43 0 chr6 60365238 60365284 -89151753 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1045 241 282 103 24 chr6 60365290 60365416 -89151621 + RMER4B LTR ERVK 287 536 -49 4 1045 528 286 27 59 chr6 60365432 60365608 -89151429 + RLTR45-int LTR ERVK 5328 5496 -1054 4 1045 381 43 0 0 chr6 60365608 60365655 -89151382 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1045 528 286 27 59 chr6 60365655 60365816 -89151221 + RLTR45-int LTR ERVK 5497 5654 -896 4 1045 22 0 0 0 chr6 60365816 60365838 -89151199 + AT_rich Low_complexity Low_complexity 1 22 0 4 1045 23858 64 2 2 chr6 60365839 60369650 -89147387 - L1Md_F2 LINE L1 -13 6569 2762 4 1045 6125 84 1 0 chr6 60369646 60370492 -89146545 + L1Md_F2 LINE L1 1913 2759 -3124 4 1045 17636 162 19 35 chr6 60370577 60374914 -89142123 + L1VL1 LINE L1 219 4488 -1395 4 1045 2157 135 211 26 chr6 60375024 60375488 -89141549 + RLTR6_Mm LTR ERV1 37 586 -68 4 1045 3453 141 2 5 chr6 60375488 60376044 -89140993 + L1VL1 LINE L1 4486 5039 -844 4 1045 3196 193 50 50 chr6 60376050 60376227 -89140810 - Lx3B LINE L1 -1 6972 6802 4 1045 1022 74 22 0 chr6 60376227 60376362 -89140675 - B1_Mm SINE Alu -8 139 2 4 1045 3196 193 50 50 chr6 60376362 60376919 -89140118 - Lx3B LINE L1 -172 6801 6238 4 1045 2327 126 139 21 chr6 60376920 60377351 -89139686 + RLTR45 LTR ERVK 1 482 0 4 1045 3814 92 39 26 chr6 60377351 60377919 -89139118 + RLTR45-int LTR ERVK 1 575 -6669 4 1045 1101 68 24 36 chr6 60378675 60378842 -89138195 + RLTR45-int LTR ERVK 549 713 -6531 4 1045 1071 72 0 0 chr6 60379170 60379308 -89137729 + RLTR45-int LTR ERVK 681 818 -6426 4 1045 456 273 28 28 chr6 60379514 60379657 -89137380 + RLTR45-int LTR ERVK 6195 6337 -1880 4 1045 2680 47 0 0 chr6 60380094 60380414 -89136623 + RLTR45-int LTR ERVK 1329 1648 -5596 4 1045 7217 155 24 10 chr6 60380503 60381885 -89135152 + RLTR45-int LTR ERVK 6331 7761 -456 4 1045 2361 128 139 19 chr6 60381885 60382315 -89134722 + RLTR45 LTR ERVK 1 482 0 4 1045 3473 174 15 8 chr6 60382322 60383097 -89133940 - Lx3B LINE L1 -742 6231 5453 4 1045 363 23 0 0 chr6 60383097 60383141 -89133896 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1045 3473 172 12 11 chr6 60383141 60383372 -89133665 - Lx3B LINE L1 -434 5452 5217 4 1045 7654 164 40 4 chr6 60383366 60384872 -89132165 + Lx3B LINE L1 3694 5254 -632 4 1045 1027 258 127 6 chr6 60384901 60384932 -89132105 - MTD LTR MaLR -45 374 334 4 1045 330 26 0 0 chr6 60384932 60384971 -89132066 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1045 1027 258 127 6 chr6 60384971 60385263 -89131774 - MTD LTR MaLR -86 333 13 4 1045 240 325 112 0 chr6 60385622 60385702 -89131335 - MLT2B3 LTR ERVL -411 143 55 4 1045 278 320 190 43 chr6 60385702 60386148 -89130889 + RMER5 LTR ERV1 1 511 -23 5 1045 666 245 10 10 chr6 60386152 60386354 -89130683 - L1_Mur3 LINE L1 -2805 3075 2874 5 1045 285 29 0 0 chr6 60386365 60386399 -89130638 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1045 1317 230 216 11 chr6 60386399 60386848 -89130189 - RMER1B Other Other -33 1033 493 5 1045 2496 254 160 44 chr6 60386908 60388245 -89128792 - L1_Mur3 LINE L1 -3002 2878 1387 5 1045 4412 117 21 40 chr6 60388243 60388992 -89128045 + L1_Mm LINE L1 3433 4167 -1716 5 1045 1095 260 111 17 chr6 60389311 60389603 -89127434 + MTD LTR MaLR 12 332 -87 5 1045 366 23 0 0 chr6 60389603 60389646 -89127391 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1045 1095 260 111 17 chr6 60389646 60389713 -89127324 + MTD LTR MaLR 333 404 -15 5 1045 306 72 0 68 chr6 60390308 60390382 -89126655 + (TTTTTG)n Simple_repeat Simple_repeat 2 70 0 5 1045 1040 72 50 0 chr6 60390384 60390523 -89126514 - B1_Mm SINE Alu -1 146 1 5 1045 23 0 0 0 chr6 60390804 60390827 -89126210 + AT_rich Low_complexity Low_complexity 1 23 0 5 1045 324 0 0 0 chr6 60391190 60391226 -89125811 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1045 22 35 0 0 chr6 60391950 60391979 -89125058 + AT_rich Low_complexity Low_complexity 1 29 0 5 1045 24 0 0 0 chr6 60392357 60392381 -89124656 + AT_rich Low_complexity Low_complexity 1 24 0 5 1045 23 33 0 0 chr6 60393178 60393208 -89123829 + AT_rich Low_complexity Low_complexity 1 30 0 5 1045 468 0 0 0 chr6 60393433 60393485 -89123552 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1045 330 322 20 77 chr6 60393677 60393872 -89123165 - MER31B LTR ERV1 -282 184 1 5 1045 357 246 0 0 chr6 60394111 60394229 -89122808 + CT-rich Low_complexity Low_complexity 3 120 0 5 1045 1140 89 0 0 chr6 60395058 60395204 -89121833 - B1_Mm SINE Alu 0 147 2 5 1045 181 250 100 0 chr6 60396663 60396723 -89120314 - MER5B DNA MER1_type -1 177 112 5 1045 303 219 0 0 chr6 60398292 60398388 -89118649 + (TA)n Simple_repeat Simple_repeat 2 97 0 5 1045 266 235 25 22 chr6 60398887 60399087 -89117950 + (TG)n Simple_repeat Simple_repeat 1 200 0 5 1045 378 61 0 0 chr6 60399087 60399136 -89117901 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1045 266 265 24 41 chr6 60399136 60399223 -89117814 + (TG)n Simple_repeat Simple_repeat 2 87 0 5 1045 380 274 9 9 chr6 60400072 60400179 -89116858 - ORR1D2 LTR MaLR 0 370 264 5 1045 811 343 123 15 chr6 60400662 60401135 -89115902 - MT2A LTR ERVL -8 525 2 5 1045 401 306 112 30 chr6 60403504 60403773 -89113264 - Lx8 LINE L1 -29 7444 7154 5 1045 525 202 8 0 chr6 60403807 60403926 -89113111 - Lx2 LINE L1 0 6997 6878 5 1045 2374 136 39 25 chr6 60403932 60404363 -89112674 - L1_Mm LINE L1 -279 5604 5168 5 1045 657 304 16 92 chr6 60404464 60405037 -89112000 + L1_Mur3 LINE L1 2601 3129 -2751 5 1045 604 358 34 6 chr6 60405126 60405446 -89111591 - Lx8 LINE L1 -481 6992 6664 5 1045 26 30 0 0 chr6 60405717 60405750 -89111287 + AT_rich Low_complexity Low_complexity 1 33 0 5 1045 557 281 167 62 chr6 60405767 60406443 -89110594 + L1_Mur3 LINE L1 3746 4492 -1388 5 1045 24572 87 8 1 chr6 60406442 60410605 -89106432 + L1Md_F2 LINE L1 2360 6555 -27 5 1045 306 314 84 21 chr6 60410722 60410865 -89106172 + MTEb LTR MaLR 1 152 -227 5 1045 319 319 5 28 chr6 60410912 60411039 -89105998 + MTEb LTR MaLR 244 370 0 5 1045 724 362 29 6 chr6 60411128 60411639 -89105398 - MurERV4-int LTR ERVK -156 5104 4582 5 1045 2877 185 43 72 chr6 60412377 60413154 -89103883 - Lx3B LINE L1 -992 5981 5217 5 1045 2236 178 7 2 chr6 60413147 60413609 -89103428 + L1_Mur1 LINE L1 3693 4156 -1730 5 1045 6372 135 26 5 chr6 60413602 60415312 -89101725 + L1_Mus3 LINE L1 4880 6632 -6 5 1045 5771 155 32 5 chr6 60415367 60416443 -89100594 + L1_Mur1 LINE L1 4149 5254 -632 5 1045 1356 278 52 47 chr6 60417572 60418108 -89098929 + RMER19B LTR ERVK 82 688 -214 5 1045 356 269 11 102 chr6 60418108 60418294 -89098743 + MurERV4_19-int LTR ERVK 1 169 -5611 5 1045 17073 82 2 1 chr6 60418323 60421365 -89095672 - L1Md_F2 LINE L1 -4 6578 3534 5 1045 9092 111 12 18 chr6 60421352 60423413 -89093624 - L1Md_F2 LINE L1 -3414 2469 420 5 130 7147 237 20 7 chr6 60423483 60425102 -89091935 + MurERV4_19-int LTR ERVK 248 1886 -3894 5 1046 5228 239 9 54 chr6 60425103 60425410 -89091627 + L1_Mur3 LINE L1 4131 4420 -1460 5 1046 1577 147 73 3 chr6 60425410 60425697 -89091340 + L1_Mus4 LINE L1 6314 6620 -16 5 1046 5228 239 9 54 chr6 60425697 60426883 -89090154 + L1_Mur3 LINE L1 4421 5556 -324 5 1046 6311 182 41 39 chr6 60426880 60427032 -89090005 + L1_Mm LINE L1 3668 3813 -2070 5 1046 6153 118 63 2 chr6 60427032 60427996 -89089041 + RLTR13D5 LTR ERVK 1 1023 0 5 1046 6311 182 41 39 chr6 60427996 60428637 -89088400 + L1_Mm LINE L1 3814 4441 -1442 5 1046 3541 109 4 0 chr6 60428637 60429134 -89087903 + L1_Mus1 LINE L1 6068 6566 -1 5 1046 6311 182 41 39 chr6 60429134 60429744 -89087293 + L1_Mm LINE L1 4442 5074 -809 5 1046 3507 137 48 23 chr6 60430365 60431420 -89085617 + RLTR13D1 LTR ERVK 1 778 -28 5 1046 1833 185 6 12 chr6 60431604 60431948 -89085089 + Lx3B LINE L1 6231 6572 -401 5 1046 327 164 0 0 chr6 60431950 60432011 -89085026 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 5 1046 2182 180 10 19 chr6 60432011 60432424 -89084613 + Lx3B LINE L1 6560 6968 -5 5 1046 182 108 54 0 chr6 60432448 60432485 -89084552 + A-rich Low_complexity Low_complexity 2 40 0 5 1046 392 0 0 20 chr6 60432906 60432955 -89084082 + (TAA)n Simple_repeat Simple_repeat 3 50 0 5 1046 5296 189 2 50 chr6 60433558 60434742 -89082295 + L1_Mur2 LINE L1 3946 5073 -804 5 1046 1038 180 125 0 chr6 60434776 60434976 -89082061 + Lx3B LINE L1 6406 6630 -343 5 1046 861 234 49 10 chr6 60435005 60435208 -89081829 - ORR1C2 LTR MaLR -2 382 172 5 1046 231 191 0 0 chr6 60435208 60435276 -89081761 + GA-rich Low_complexity Low_complexity 1 68 0 5 1046 561 96 0 0 chr6 60436639 60436733 -89080304 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 1046 334 85 85 0 chr6 60437174 60437280 -89079757 + T-rich Low_complexity Low_complexity 1 115 0 5 1046 1101 82 7 0 chr6 60437280 60437426 -89079611 - B1_Mm SINE Alu 0 147 1 5 1046 269 331 176 33 chr6 60437462 60437615 -89079422 - B3 SINE B2 0 216 42 5 1046 24 0 0 0 chr6 60439024 60439048 -89077989 + AT_rich Low_complexity Low_complexity 1 24 0 5 1046 28 107 0 0 chr6 60439089 60439201 -89077836 + AT_rich Low_complexity Low_complexity 1 112 0 5 1046 207 88 0 0 chr6 60440602 60440636 -89076401 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1046 4169 222 31 54 chr6 60440636 60441781 -89075256 - RLTR21 LTR ERVK -454 1118 1 5 1046 294 29 0 0 chr6 60442595 60442630 -89074407 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 5 1046 2470 174 21 108 chr6 60442656 60443934 -89073103 + L1_Mus1 LINE L1 271 1494 -2420 5 1046 605 228 32 0 chr6 60443937 60444060 -89072977 + ETnERV2-int LTR ERVK 7070 7196 -210 5 1046 25416 119 8 19 chr6 60444449 60449587 -89067450 + L1_Mus1 LINE L1 1491 6565 -2 5 1046 1012 24 0 0 chr6 60449738 60449864 -89067173 - L1Md_T LINE L1 -767 5815 5690 5 1046 6797 36 0 14 chr6 60449864 60450691 -89066346 + L1Md_T LINE L1 5768 6582 0 5 1046 26 64 0 0 chr6 60450865 60450912 -89066125 + AT_rich Low_complexity Low_complexity 1 47 0 5 1046 492 277 49 61 chr6 60451374 60451656 -89065381 + MYSERV-int LTR ERVK 4845 5033 -1517 5 1046 331 288 80 75 chr6 60451740 60451929 -89065108 + RMER4A LTR ERVK 251 553 -32 5 1046 1476 234 50 36 chr6 60451935 60452095 -89064942 + MYSERV-int LTR ERVK 5330 5488 -1062 5 1046 506 146 0 0 chr6 60452095 60452184 -89064853 + L1_Mus2 LINE L1 6478 6566 0 5 1046 1476 234 50 36 chr6 60452184 60452609 -89064428 + MYSERV-int LTR ERVK 5489 5923 -627 5 1046 6234 169 34 15 chr6 60452655 60454073 -89062964 + Lx LINE L1 5512 6995 -5 5 1046 840 91 0 0 chr6 60454076 60454197 -89062840 + Lx3B LINE L1 5790 5910 -1063 5 1046 601 134 18 0 chr6 60454200 60454312 -89062725 + GA-rich Low_complexity Low_complexity 2 115 0 5 1046 463 209 60 0 chr6 60454352 60454486 -89062551 + Lx3C LINE L1 5943 6084 -892 5 1046 275 91 36 0 chr6 60454561 60454616 -89062421 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 5 1046 516 227 80 64 chr6 60454622 60454810 -89062227 - ORR1C2 LTR MaLR -189 195 5 5 1046 645 128 0 0 chr6 60454822 60454924 -89062113 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 5 1046 1510 179 33 17 chr6 60454974 60455275 -89061762 - Lx3A LINE L1 -8 6973 6668 5 1046 4783 143 44 10 chr6 60455275 60456162 -89060875 + Lx3A LINE L1 5735 6651 -330 5 1046 3230 100 28 2 chr6 60456163 60456626 -89060411 - MT2C_Mm LTR ERVL 0 475 1 5 1046 253 162 28 56 chr6 60456661 60456733 -89060304 - ORR1C2-int LTR MaLR -1323 640 571 5 1046 326 97 65 0 chr6 60456737 60456799 -89060238 - MERVL-int LTR ERVL -132 5629 5564 5 1046 852 189 0 0 chr6 60456817 60456981 -89060056 + L1Md_F2 LINE L1 174 337 -6282 5 1046 31863 70 0 1 chr6 60456974 60461905 -89055132 + L1Md_F2 LINE L1 563 5589 -297 5 1046 8085 50 3 0 chr6 60461906 60462898 -89054139 + L1Md_F2 LINE L1 5591 6585 0 5 1046 11560 75 3 0 chr6 60462961 60464523 -89052514 - MERVL-int LTR ERVL -129 5356 3790 5 1046 18711 71 19 10 chr6 60464519 60467109 -89049928 - MERVL-int LTR ERVL -2872 2613 1 5 1046 3542 77 21 0 chr6 60467109 60467574 -89049463 - MT2C_Mm LTR ERVL 0 475 1 5 1046 201 74 0 0 chr6 60467677 60467704 -89049333 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1046 25 51 0 0 chr6 60467871 60467910 -89049127 + AT_rich Low_complexity Low_complexity 1 39 0 5 1046 490 193 27 18 chr6 60467984 60468095 -89048942 + Lx3C LINE L1 6858 6969 -7 5 1046 3784 133 7 7 chr6 60468225 60468837 -89048200 + L1_Mus3 LINE L1 6027 6638 0 5 1046 2573 149 19 2 chr6 60468862 60469292 -89047745 + Lx3_Mus LINE L1 6572 7008 -1 5 1046 4263 146 127 63 chr6 60469317 60470277 -89046760 - RLTR13D2 LTR ERVK -2 1021 1 5 1046 8242 103 3 9 chr6 60471104 60473495 -89043542 + L1Md_F2 LINE L1 98 2409 -3474 5 1046 11523 25 1 1 chr6 60473499 60475589 -89041448 - L1Md_A LINE L1 -12 6570 4481 5 1046 22690 74 2 0 chr6 60475586 60478772 -89038265 + L1Md_F2 LINE L1 2393 5585 -298 5 1046 7931 52 4 5 chr6 60478773 60479770 -89037267 + L1Md_F2 LINE L1 5587 6582 0 5 1046 316 304 33 33 chr6 60480254 60480407 -89036630 - L1MC3 LINE L1 -20 7765 7613 5 1046 342 289 116 0 chr6 60480419 60480540 -89036497 - B1F SINE Alu -6 143 9 5 1046 1159 262 43 21 chr6 60480586 60481023 -89036014 - Lx7 LINE L1 -3 7693 7247 5 1046 3254 48 0 0 chr6 60481041 60481458 -89035579 + L1Md_F3 LINE L1 5169 5585 -298 5 1046 7868 48 11 1 chr6 60481460 60482447 -89034590 + L1Md_F3 LINE L1 5588 6584 0 5 1046 1203 227 11 4 chr6 60482448 60482727 -89034310 - Lx7 LINE L1 -437 7259 6979 5 1046 9237 201 55 72 chr6 60482727 60485559 -89031478 - L1_Mur3 LINE L1 -1694 4186 1418 5 1046 2190 139 11 0 chr6 60485559 60485925 -89031112 - L1_Mus3 LINE L1 0 6638 6269 5 1046 9237 205 44 46 chr6 60485925 60486243 -89030794 - L1_Mur3 LINE L1 -4463 1417 1084 5 1046 512 240 58 0 chr6 60486245 60486399 -89030638 - Lx6 LINE L1 -11 7449 7287 5 1046 1497 245 25 20 chr6 60486417 60486863 -89030174 - L1_Mur3 LINE L1 -6664 1064 617 5 1046 333 313 49 38 chr6 60487243 60487509 -89029528 - L1MC3 LINE L1 -314 7471 7203 5 1046 231 312 68 61 chr6 60487612 60487923 -89029114 - L1MC3 LINE L1 -730 7055 6743 5 1046 1710 152 16 10 chr6 60487972 60488284 -89028753 + Lx2 LINE L1 6614 6927 -70 5 1046 3967 179 64 1 chr6 60488334 60489084 -89027953 - Lx4A LINE L1 -2 7056 6260 5 1046 3432 126 74 5 chr6 60489085 60489259 -89027778 + Lx4A LINE L1 5606 5798 -1260 5 1046 423 0 0 0 chr6 60489259 60489306 -89027731 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1046 3432 126 74 5 chr6 60489306 60489737 -89027300 + Lx4A LINE L1 5799 6253 -805 5 1046 225 298 63 52 chr6 60489801 60489992 -89027045 - L1MC3 LINE L1 -1190 6595 6403 5 1046 369 367 92 8 chr6 60489996 60490235 -89026802 + MLT-int LTR MaLR 358 616 -1119 5 1046 254 286 0 0 chr6 60490390 60490453 -89026584 + ID4_ SINE ID 3 65 -18 5 1046 288 0 0 0 chr6 60491203 60491235 -89025802 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 1046 583 127 17 0 chr6 60491352 60491470 -89025567 + (GA)n Simple_repeat Simple_repeat 1 120 0 6 1046 32687 93 10 8 chr6 60491871 60498219 -89018818 - L1Md_F2 LINE L1 -12 6570 212 6 1046 2788 224 119 5 chr6 60498374 60499172 -89017865 + L1_Rod LINE L1 514 1408 -4439 6 1046 3616 138 11 4 chr6 60499175 60499736 -89017301 - ETnERV2-int LTR ERVK -347 7059 6495 6 1046 471 283 13 0 chr6 60499846 60499998 -89017039 - RNERVK23-int LTR ERVK -469 7748 7595 6 1046 443 133 13 0 chr6 60500044 60500119 -89016918 - RLTR45-int LTR ERVK -917 6489 6414 1 1046 5543 168 60 130 chr6 60500125 60502031 -89015006 - RLTR45-int LTR ERVK -1176 6068 4296 1 1046 1188 217 62 24 chr6 60502064 60502352 -89014685 - ETnERV2-int LTR ERVK -4653 2753 2455 2 1046 503 165 128 0 chr6 60502366 60502475 -89014562 - RMER16-int LTR ERVK -5077 1060 938 3 1046 1821 188 145 45 chr6 60502480 60502997 -89014040 - RMER16-int LTR ERVK -4587 819 251 3 1046 300 289 25 8 chr6 60503202 60503324 -89013713 - RMER16-int LTR ERVK -6940 304 181 3 1046 497 284 47 0 chr6 60503889 60504016 -89013021 - ETnERV2-int LTR ERVK -204 7202 7070 4 1046 1898 194 94 58 chr6 60504018 60504231 -89012806 + L1_Rod LINE L1 1404 1606 -4241 5 1046 504 0 0 0 chr6 60504231 60504287 -89012750 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 1046 1898 194 94 58 chr6 60504287 60504784 -89012253 + L1_Rod LINE L1 1607 2140 -3707 5 1046 890 247 65 80 chr6 60504783 60505259 -89011778 + L1_Rod LINE L1 2727 3195 -2652 5 1046 22 0 0 0 chr6 60505357 60505379 -89011658 + AT_rich Low_complexity Low_complexity 1 22 0 7 1046 795 211 42 18 chr6 60506583 60506800 -89010237 - URR1A DNA MER1_type -1 225 4 8 1046 495 0 0 0 chr6 60506845 60506900 -89010137 + (TA)n Simple_repeat Simple_repeat 2 56 0 9 1046 236 330 23 0 chr6 60506902 60506990 -89010047 + MER20B DNA MER1_type 292 381 -402 1 1046 1539 167 149 0 chr6 60507013 60507342 -89009695 + ORR1C1 LTR MaLR 1 378 0 1 1046 21 0 0 0 chr6 60507703 60507724 -89009313 + AT_rich Low_complexity Low_complexity 1 21 0 1 1046 189 0 0 0 chr6 60508156 60508177 -89008860 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1046 6322 41 0 0 chr6 60508276 60509032 -89008005 + L1Md_T LINE L1 5827 6582 0 1 1046 212 261 108 0 chr6 60509658 60509723 -89007314 - MIRb SINE MIR -96 172 101 1 1046 381 43 0 0 chr6 60509860 60509907 -89007130 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1046 546 16 0 0 chr6 60510252 60510315 -89006722 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1046 280 346 152 11 chr6 60510694 60510878 -89006159 + LTR68 LTR ERV1 204 413 -327 1 1046 216 67 0 0 chr6 60511305 60511335 -89005702 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1046 180 0 0 0 chr6 60511787 60511807 -89005230 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1046 201 69 0 0 chr6 60512430 60512442 -89004595 + (T)n Simple_repeat Simple_repeat 1 12 0 2 1046 1153 75 0 0 chr6 60512442 60512589 -89004448 - B1_Mus2 SINE Alu 0 147 1 2 1046 201 69 0 0 chr6 60512589 60512605 -89004432 + (T)n Simple_repeat Simple_repeat 1 16 0 2 1046 397 369 39 6 chr6 60513128 60513308 -89003729 - MLT1F1 LTR MaLR -268 301 116 2 1046 270 0 0 0 chr6 60513432 60513462 -89003575 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 1046 1406 231 81 3 chr6 60513464 60513772 -89003265 - ORR1D2 LTR MaLR 0 370 39 2 1046 956 112 6 23 chr6 60514666 60514840 -89002197 + (GGGA)n Simple_repeat Simple_repeat 2 172 0 2 1046 1087 256 78 12 chr6 60514979 60515518 -89001519 - Lx7 LINE L1 -1536 5937 5364 2 1046 919 57 0 0 chr6 60515852 60515976 -89001061 + L1Md_T LINE L1 6458 6581 -1 2 1046 315 361 48 72 chr6 60516184 60516351 -89000686 - RSINE1 SINE B4 0 165 3 3 1046 22 35 0 0 chr6 60516531 60516560 -89000477 + AT_rich Low_complexity Low_complexity 1 29 0 3 1046 217 211 0 0 chr6 60516884 60516922 -89000115 + B3 SINE B2 35 72 -144 3 1046 1950 167 0 39 chr6 60516925 60517281 -88999756 + Lx4A LINE L1 6708 7049 -9 3 1046 224 100 25 0 chr6 60517305 60517345 -88999692 + (GAAA)n Simple_repeat Simple_repeat 1 41 0 3 1046 1032 156 0 0 chr6 60517347 60517527 -88999510 + GA-rich Low_complexity Low_complexity 1 180 0 3 1046 285 29 0 0 chr6 60517529 60517563 -88999474 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 3 1046 1166 104 17 0 chr6 60517563 60517736 -88999301 + RLTR13C2 LTR ERVK 618 793 -15 3 1046 4701 58 30 0 chr6 60517713 60518320 -88998717 - RLTR13C2 LTR ERVK -183 625 1 3 1046 13361 153 11 26 chr6 60518321 60520966 -88996071 - L1_Mm LINE L1 -1467 4416 1813 3 1046 2286 187 5 19 chr6 60520988 60521481 -88995556 - L1VL4 LINE L1 -5464 838 154 4 1046 312 191 0 0 chr6 60521552 60521615 -88995422 + Lx6 LINE L1 3878 3940 -1940 4 1046 1679 175 79 10 chr6 60521616 60522009 -88995028 + Lx6 LINE L1 4210 4629 -1251 4 1046 245 89 22 0 chr6 60522012 60522057 -88994980 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 4 1046 4363 221 34 51 chr6 60522075 60523591 -88993446 + Lx6 LINE L1 4623 6110 -1350 4 1046 372 97 0 0 chr6 60523631 60523693 -88993344 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 4 1046 2524 82 3 3 chr6 60523698 60524039 -88992998 + ORR1A1 LTR MaLR 6 346 0 4 1046 2021 272 56 10 chr6 60524039 60524630 -88992407 + Lx6 LINE L1 6150 6767 -693 4 1046 1500 244 25 0 chr6 60524630 60524945 -88992092 + ORR1B1 LTR MaLR 1 323 -71 4 1046 3853 125 27 2 chr6 60524946 60525572 -88991465 + Lx3_Mus LINE L1 6184 6825 -184 4 1046 2004 118 15 41 chr6 60525572 60525961 -88991076 + RLTR10A LTR ERVK 1 359 0 4 1046 312 130 0 0 chr6 60525998 60526044 -88990993 + RLTR10-int LTR ERVK 222 267 -7314 4 1046 705 58 0 0 chr6 60526444 60526548 -88990489 + RLTR10-int LTR ERVK 749 852 -1135 4 1046 924 9 0 0 chr6 60526698 60526803 -88990234 + (TTC)n Simple_repeat Simple_repeat 1 105 0 4 1046 579 111 0 39 chr6 60526803 60526906 -88990131 + RLTR10-int LTR ERVK 79 177 -6365 5 1046 723 205 6 0 chr6 60526900 60527056 -88989981 + RLTR10-int LTR ERVK 347 503 -6039 5 1046 3285 73 84 14 chr6 60527056 60527543 -88989494 + RLTR10-int LTR ERVK 5007 5527 -1015 5 1046 4512 104 23 16 chr6 60527555 60528291 -88988746 + RLTR10-int LTR ERVK 1288 1986 -1 5 1046 1996 108 23 31 chr6 60528291 60528670 -88988367 + RLTR10A LTR ERVK 1 385 0 5 1046 653 162 155 0 chr6 60528670 60528818 -88988219 + Lx3_Mus LINE L1 6820 6990 -19 5 1046 375 189 189 0 chr6 60528808 60528919 -88988118 + Lx3_Mus LINE L1 6857 6988 -21 4 1046 360 64 0 0 chr6 60528919 60528966 -88988071 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 5 1046 488 136 12 0 chr6 60528970 60529051 -88987986 + ORR1B1 LTR MaLR 278 359 -8 4 1046 2318 264 68 6 chr6 60529054 60529703 -88987334 + Lx6 LINE L1 6762 7450 -10 4 1046 228 272 32 32 chr6 60530347 60530442 -88986595 - Lx8 LINE L1 -5 7468 7374 5 1046 1334 327 106 10 chr6 60530538 60531088 -88985949 - Lx8 LINE L1 -235 7238 6632 5 1046 887 248 201 10 chr6 60531088 60531402 -88985635 + ORR1D1 LTR MaLR 1 374 0 5 1046 1334 327 106 10 chr6 60531402 60531673 -88985364 - Lx8 LINE L1 -842 6631 6338 5 1046 240 133 16 32 chr6 60531905 60531967 -88985070 + GA-rich Low_complexity Low_complexity 3 63 0 5 1046 252 361 81 34 chr6 60532093 60532242 -88984795 - MLT1A0 LTR MaLR -174 191 36 5 1046 269 287 119 49 chr6 60532651 60532794 -88984243 - MLT1A0 LTR MaLR -205 160 8 5 1046 1445 307 55 8 chr6 60533910 60534527 -88982510 - Lx8 LINE L1 -141 7332 6687 5 1046 353 322 101 11 chr6 60534594 60534773 -88982264 + L1M4 LINE L1 5568 5762 -412 5 1046 483 18 0 0 chr6 60538046 60538102 -88978935 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1046 279 0 0 0 chr6 60538440 60538471 -88978566 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1046 461 208 97 39 chr6 60539367 60539415 -88977622 - RLTR43A LTR ERVK 0 364 309 6 1046 189 0 0 0 chr6 60539415 60539436 -88977601 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1046 306 0 0 0 chr6 60539436 60539469 -88977568 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1046 461 208 97 39 chr6 60539469 60539574 -88977463 - RLTR43A LTR ERVK -56 308 202 6 1046 378 0 0 0 chr6 60540577 60540619 -88976418 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1046 1771 19 28 0 chr6 60541498 60541711 -88975326 + MT2_Mm LTR ERVL 275 493 0 6 1046 3469 36 0 0 chr6 60541711 60542154 -88974883 - L1_Mm LINE L1 -1494 4389 3947 6 1046 3991 48 40 0 chr6 60542263 60542763 -88974274 - L1Md_F2 LINE L1 -1 6581 6062 6 1046 237 65 0 0 chr6 60543968 60543999 -88973038 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1046 31521 31 3 1 chr6 60544107 60548770 -88968267 - L1Md_T LINE L1 0 6582 1906 7 1046 2251 136 101 0 chr6 60548769 60549224 -88967813 - L1Md_A LINE L1 -6038 686 186 7 1046 330 312 142 39 chr6 60551462 60551695 -88965342 + Lx9 LINE L1 6372 6628 -1016 7 1046 295 261 127 32 chr6 60551771 60551929 -88965108 + Lx9 LINE L1 6788 6960 -684 7 1046 315 284 48 34 chr6 60552025 60552171 -88964866 + Lx9 LINE L1 7284 7431 -213 7 1046 6902 31 24 2 chr6 60552703 60553621 -88963416 - L1Md_F2 LINE L1 0 6582 5684 7 1046 693 243 14 0 chr6 60554001 60554145 -88962892 - B1_Mus1 SINE Alu -1 147 2 7 1046 278 289 124 0 chr6 60554232 60554329 -88962708 - PB1D10 SINE Alu -8 109 1 7 130 27795 82 24 1 chr6 60554584 60559365 -88957672 + L1Md_F2 LINE L1 596 5586 -297 7 1047 8195 43 0 6 chr6 60559366 60560367 -88956670 + L1Md_F2 LINE L1 5588 6582 0 7 1047 9543 71 2 1 chr6 60560367 60561621 -88955416 + L1Md_F2 LINE L1 4332 5586 -297 7 1047 7894 51 2 2 chr6 60561621 60562601 -88954436 + L1Md_F2 LINE L1 5587 6566 -16 7 1047 25 51 0 0 chr6 60562601 60562640 -88954397 + AT_rich Low_complexity Low_complexity 1 39 0 7 1047 23 33 0 0 chr6 60562714 60562744 -88954293 + AT_rich Low_complexity Low_complexity 1 30 0 7 1047 1752 149 18 27 chr6 60562793 60563125 -88953912 + ORR1A4 LTR MaLR 1 329 0 8 1047 305 172 0 15 chr6 60563771 60563836 -88953201 + CT-rich Low_complexity Low_complexity 2 65 0 8 1047 1070 319 92 62 chr6 60563842 60564440 -88952597 - Lx8 LINE L1 -235 7238 6633 8 1047 1026 268 97 3 chr6 60564440 60564780 -88952257 + ORR1D1 LTR MaLR 1 372 -2 8 1047 1070 319 92 62 chr6 60564780 60564804 -88952233 - Lx8 LINE L1 -841 6632 6608 8 1047 342 0 0 0 chr6 60564804 60564842 -88952195 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 8 1047 1070 320 84 61 chr6 60564842 60565113 -88951924 - Lx8 LINE L1 -866 6607 6347 8 1047 201 74 0 0 chr6 60565322 60565349 -88951688 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1047 284 102 20 0 chr6 60565345 60565394 -88951643 + (GGA)n Simple_repeat Simple_repeat 3 52 0 8 1047 570 280 34 19 chr6 60565936 60566134 -88950903 - MLT1A0 LTR MaLR -16 374 187 8 1047 207 0 0 0 chr6 60567001 60567024 -88950013 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1047 568 305 107 19 chr6 60567274 60567582 -88949455 + L1_Mur3 LINE L1 118 452 -7276 8 1047 450 0 0 0 chr6 60567585 60567635 -88949402 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 9 1047 220 167 16 16 chr6 60567635 60567680 -88949357 + G-rich Low_complexity Low_complexity 4 48 0 9 1047 1250 74 6 0 chr6 60567680 60567855 -88949182 + (GGAGA)n Simple_repeat Simple_repeat 1 176 0 9 1047 220 167 16 16 chr6 60567855 60567870 -88949167 + G-rich Low_complexity Low_complexity 49 63 0 9 1047 725 198 6 19 chr6 60567870 60567893 -88949144 + L1_Mur3 LINE L1 2247 2268 -3612 8 1047 744 43 0 0 chr6 60567893 60567985 -88949052 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 9 1047 725 198 6 19 chr6 60567985 60568121 -88948916 + L1_Mur3 LINE L1 2269 2404 -3476 8 1047 5613 171 32 3 chr6 60568117 60569470 -88947567 + Lx3C LINE L1 5255 6649 -327 9 1047 36024 39 5 7 chr6 60569470 60574829 -88942208 + L1Md_T LINE L1 242 5586 -297 9 1047 8362 37 0 0 chr6 60574829 60575825 -88941212 + L1Md_T LINE L1 5587 6582 0 9 1047 1419 241 54 0 chr6 60575825 60576141 -88940896 + Lx3C LINE L1 6633 6965 -11 9 1047 5365 200 75 15 chr6 60576155 60576326 -88940711 + L1_Mur3 LINE L1 2407 2598 -3282 8 1047 312 70 0 0 chr6 60576326 60576369 -88940668 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1047 5365 200 75 15 chr6 60576369 60577588 -88939449 + L1_Mur3 LINE L1 2599 3879 -2001 8 1047 2719 177 6 4 chr6 60577590 60578073 -88938964 + L1_Mur3 LINE L1 5362 5845 -35 8 1047 478 245 19 9 chr6 60578081 60578188 -88938849 - Lx7 LINE L1 -965 6731 6624 9 1047 1979 138 3 42 chr6 60578191 60578525 -88938512 + ORR1A4 LTR MaLR 1 321 -8 9 1047 616 218 0 0 chr6 60578529 60578639 -88938398 - Lx7 LINE L1 -1071 6625 6516 9 1047 945 197 55 10 chr6 60578647 60578847 -88938190 + Lx6 LINE L1 5744 5952 -1508 1 1047 2494 177 20 28 chr6 60578849 60579348 -88937689 - RLTR13D2 LTR ERVK 0 1023 529 1 1047 774 93 0 33 chr6 60579330 60579452 -88937585 - RLTR13D2 LTR ERVK -688 118 1 1 1047 4212 208 131 67 chr6 60579570 60579658 -88937379 + L1_Mur3 LINE L1 3558 3648 -2232 1 1047 1712 142 46 15 chr6 60579658 60579987 -88937050 + Lx2 LINE L1 6656 6994 -3 1 1047 4212 208 131 67 chr6 60579987 60581367 -88935670 + L1_Mur3 LINE L1 3649 5120 -760 1 1047 2186 225 77 4 chr6 60581369 60581925 -88935112 - L1_Mur3 LINE L1 -200 5680 5115 1 1047 226 136 0 22 chr6 60581929 60581974 -88935063 - Lx6 LINE L1 -28 7432 7389 1 1047 21 57 0 0 chr6 60582119 60582154 -88934883 + AT_rich Low_complexity Low_complexity 1 35 0 1 1047 456 338 29 0 chr6 60582265 60582404 -88934633 + B1F1 SINE Alu 7 149 0 1 1047 345 316 61 42 chr6 60582670 60582931 -88934106 - L1M5 LINE L1 -391 5788 5523 1 1047 338 113 16 0 chr6 60583827 60583889 -88933148 - Lx3_Mus LINE L1 -8 7001 6939 1 1047 5732 262 60 34 chr6 60583968 60584530 -88932507 + L1_Rod LINE L1 1040 1611 -4236 1 1047 456 111 0 0 chr6 60584530 60584602 -88932435 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1047 5732 266 101 67 chr6 60584602 60587596 -88929441 + L1_Rod LINE L1 1612 4720 -1127 1 1047 609 253 199 27 chr6 60587593 60588274 -88928763 + L1_Rod LINE L1 4104 5460 -387 1 1047 511 227 80 16 chr6 60588321 60588474 -88928563 - B1_Mur4 SINE Alu -2 148 1 1 1047 378 0 0 0 chr6 60588623 60588665 -88928372 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1047 836 298 45 5 chr6 60588701 60589075 -88927962 + L1_Rod LINE L1 4683 5071 -809 1 1047 1552 273 30 56 chr6 60589103 60589639 -88927398 + RLTR20A1 LTR ERVK 7 528 -23 1 1047 1264 290 68 47 chr6 60589726 60590434 -88926603 + L1_Rod LINE L1 5138 5834 -13 1 1047 23 0 0 0 chr6 60590471 60590494 -88926543 + AT_rich Low_complexity Low_complexity 1 23 0 1 1047 354 163 0 2 chr6 60590599 60590659 -88926378 + B3A SINE B2 2 60 -156 1 1047 29 0 0 0 chr6 60590671 60590700 -88926337 + AT_rich Low_complexity Low_complexity 1 29 0 1 1047 225 294 174 0 chr6 60590730 60590822 -88926215 + PB1D7 SINE Alu 2 109 -11 1 1047 629 174 8 0 chr6 60590843 60590975 -88926062 + (TAGA)n Simple_repeat Simple_repeat 3 135 0 1 1047 435 162 0 0 chr6 60591875 60591955 -88925082 + (TA)n Simple_repeat Simple_repeat 2 81 0 1 1047 2077 239 71 71 chr6 60592223 60592469 -88924568 + RLTR25B LTR ERVK 282 552 -476 1 1047 3121 202 133 72 chr6 60592469 60593319 -88923718 + RMER19B LTR ERVK 1 902 0 1 1047 2077 239 71 71 chr6 60593319 60593597 -88923440 + RLTR25B LTR ERVK 553 822 -206 1 1047 441 0 0 0 chr6 60593597 60593646 -88923391 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1047 2077 239 71 71 chr6 60593646 60593867 -88923170 + RLTR25B LTR ERVK 823 1028 0 1 1047 513 47 0 0 chr6 60593927 60593991 -88923046 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 1 1047 360 0 0 0 chr6 60595423 60595463 -88921574 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1047 240 35 0 0 chr6 60595932 60595961 -88921076 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1047 213 65 0 0 chr6 60596291 60596322 -88920715 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1047 3510 123 60 34 chr6 60596750 60597449 -88919588 + RLTR13C2 LTR ERVK 270 1033 0 1 1047 667 239 14 0 chr6 60597883 60598021 -88919016 + B1_Mur1 SINE Alu 2 141 -8 1 1047 192 250 100 50 chr6 60598228 60598308 -88918729 - L2 LINE L2 -1877 1542 1459 1 1047 525 177 0 0 chr6 60598312 60598459 -88918578 + CT-rich Low_complexity Low_complexity 2 148 0 1 1047 492 48 0 0 chr6 60598454 60598517 -88918520 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1047 681 152 0 0 chr6 60598740 60598911 -88918126 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 1 1047 638 152 169 0 chr6 60598931 60599049 -88917988 - B1_Mur3 SINE Alu -2 147 10 1 1047 8730 97 15 17 chr6 60599099 60599752 -88917285 + Lx3A LINE L1 5259 5906 -1075 1 1047 684 36 0 0 chr6 60599752 60599835 -88917202 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 1 1047 8730 111 44 2 chr6 60599835 60600848 -88916189 + Lx3A LINE L1 5907 6972 -9 1 1047 209 387 13 39 chr6 60601169 60601325 -88915712 - MIR SINE MIR -74 188 37 1 1047 252 256 27 182 chr6 60602715 60602863 -88914174 + MLT1L LTR MaLR 96 220 -390 1 1047 321 312 32 0 chr6 60603088 60603181 -88913856 - Lx8 LINE L1 -1182 6291 6196 1 1047 208 212 15 15 chr6 60603203 60603270 -88913767 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1047 323 269 28 55 chr6 60603271 60603452 -88913585 - Lx8 LINE L1 -1310 6334 6060 1 1047 3349 296 42 18 chr6 60603458 60604067 -88912970 + Lx8 LINE L1 6346 6949 -524 1 1047 450 0 0 0 chr6 60604067 60604117 -88912920 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1047 444 67 0 0 chr6 60604117 60604176 -88912861 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1047 3349 296 42 18 chr6 60604176 60604658 -88912379 + Lx8 LINE L1 6950 7463 -10 1 1047 429 346 62 0 chr6 60604673 60604852 -88912185 - B3 SINE B2 0 216 27 1 1047 2271 113 3 0 chr6 60604901 60605229 -88911808 + Lx2 LINE L1 6344 6672 -325 1 1047 210 203 79 63 chr6 60605233 60605296 -88911741 - B3A SINE B2 -132 66 3 1 1047 1400 209 87 3 chr6 60605636 60605957 -88911080 - ORR1D1 LTR MaLR -26 348 1 1 1047 22 35 0 0 chr6 60606480 60606509 -88910528 + AT_rich Low_complexity Low_complexity 1 29 0 1 1047 218 32 32 0 chr6 60606563 60606594 -88910443 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1047 212 243 29 0 chr6 60607989 60608059 -88908978 + (ATG)n Simple_repeat Simple_repeat 1 72 0 1 1047 586 285 0 14 chr6 60608230 60608376 -88908661 + ID_B1 SINE B4 81 224 0 1 1047 4665 38 5 0 chr6 60608468 60609028 -88908009 - L1Md_F3 LINE L1 -1 6583 6021 1 1047 1914 188 20 21 chr6 60609028 60609468 -88907569 - RLTR11A LTR ERVK -33 495 1 1 1047 1125 142 0 0 chr6 60610730 60610892 -88906145 + B2_Mm2 SINE B2 1 162 -33 1 1047 480 35 0 0 chr6 60611185 60611243 -88905794 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1047 261 0 0 0 chr6 60611243 60611271 -88905766 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1047 21 0 0 0 chr6 60611575 60611596 -88905441 + AT_rich Low_complexity Low_complexity 1 21 0 1 1047 5338 196 20 21 chr6 60611854 60612934 -88904103 - Lx5 LINE L1 0 7050 5972 1 1047 240 35 0 0 chr6 60613481 60613510 -88903527 + (G)n Simple_repeat Simple_repeat 1 29 0 1 1047 277 22 43 22 chr6 60613889 60613935 -88903102 + (CAAAA)n Simple_repeat Simple_repeat 1 47 0 1 1047 423 0 0 0 chr6 60615907 60615954 -88901083 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1047 462 36 0 0 chr6 60616194 60616250 -88900787 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1047 414 53 0 0 chr6 60617017 60617026 -88900011 + (TA)n Simple_repeat Simple_repeat 2 10 0 1 1047 207 0 0 0 chr6 60617026 60617049 -88899988 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1047 414 53 0 0 chr6 60617049 60617067 -88899970 + (TA)n Simple_repeat Simple_repeat 2 19 0 1 1047 512 100 12 0 chr6 60617067 60617147 -88899890 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1047 414 53 0 0 chr6 60617147 60617175 -88899862 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1047 8924 49 0 1 chr6 60617953 60619105 -88897932 + L1Md_F3 LINE L1 4436 5586 -297 1 1047 7838 45 11 2 chr6 60619105 60620080 -88896957 + L1Md_F3 LINE L1 5587 6570 -14 1 1047 7776 85 6 1 chr6 60620290 60622117 -88894920 - L1_Mus1 LINE L1 0 6654 4738 1 1047 578 196 39 33 chr6 60622117 60622270 -88894767 + B2_Mm2 SINE B2 40 193 -2 1 1047 468 0 0 0 chr6 60623352 60623404 -88893633 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1047 1111 52 0 0 chr6 60623410 60623546 -88893491 - B1_Mus1 SINE Alu -8 140 5 1 1047 477 0 0 0 chr6 60624221 60624274 -88892763 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1047 541 316 8 0 chr6 60624632 60624765 -88892272 + RSINE1 SINE B4 7 140 -25 1 1047 244 143 56 93 chr6 60624963 60624974 -88892063 - PB1D10 SINE Alu -1 116 65 1 1047 267 209 0 0 chr6 60624974 60625017 -88892020 - ID_B1 SINE B4 -7 217 175 1 1047 27 0 0 0 chr6 60625135 60625162 -88891875 + AT_rich Low_complexity Low_complexity 1 27 0 1 1047 376 233 0 0 chr6 60625796 60625869 -88891168 + B3 SINE B2 5 77 -139 1 1047 4440 103 61 9 chr6 60625869 60626544 -88890493 + Lx3A LINE L1 6266 6975 -6 1 1047 24 0 0 0 chr6 60626545 60626569 -88890468 + AT_rich Low_complexity Low_complexity 1 24 0 1 1047 398 230 61 45 chr6 60626590 60626722 -88890315 + MTC-int LTR MaLR 1117 1250 -8 1 1047 2200 64 30 20 chr6 60626828 60627132 -88889905 - IAPLTR2b LTR ERVK -20 307 1 1 1047 709 281 82 51 chr6 60627132 60627357 -88889680 + MTD LTR MaLR 172 398 -21 1 1047 807 297 91 10 chr6 60627710 60628006 -88889031 - MLT1B LTR MaLR -3 387 68 1 1047 398 165 0 12 chr6 60628812 60628892 -88888145 + T-rich Low_complexity Low_complexity 5 83 0 1 1047 527 0 0 16 chr6 60628907 60628971 -88888066 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1047 513 92 0 0 chr6 60628971 60629046 -88887991 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1047 710 264 18 0 chr6 60629064 60629231 -88887806 - B3 SINE B2 -42 174 5 1 1047 21 0 0 0 chr6 60629584 60629605 -88887432 + AT_rich Low_complexity Low_complexity 1 21 0 1 1047 6692 32 6 6 chr6 60629605 60630454 -88886583 - L1Md_F3 LINE L1 -12 6572 5724 1 1047 7097 49 0 1 chr6 60630453 60631366 -88885671 + L1Md_F3 LINE L1 4790 5701 -182 1 1047 1807 144 77 18 chr6 60632877 60633216 -88883821 + Lx3B LINE L1 6613 6971 -2 1 1047 242 95 24 0 chr6 60633442 60633484 -88883553 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1047 1026 256 123 42 chr6 60633573 60633931 -88883106 - MTD LTR MaLR -15 404 18 1 1047 231 282 28 0 chr6 60634009 60634080 -88882957 + Lx8 LINE L1 7200 7272 -201 1 1047 1064 317 69 6 chr6 60634796 60635142 -88881895 - MTD LTR MaLR 0 419 52 1 1047 245 264 65 35 chr6 60635946 60636115 -88880922 - Lx8 LINE L1 0 7473 7300 1 1047 284 234 47 58 chr6 60636112 60636198 -88880839 - Lx8 LINE L1 -326 7147 7063 1 1047 765 303 35 12 chr6 60636194 60636448 -88880589 - Lx8 LINE L1 -1017 6456 6197 1 1047 479 176 9 0 chr6 60637216 60637324 -88879713 + GSAT_MM Satellite Satellite 222 330 -141 1 1047 796 166 33 57 chr6 60638633 60638855 -88878182 - L1VL4 LINE L1 -5977 1005 780 1 1047 855 338 26 26 chr6 60639349 60639732 -88877305 + Lx8 LINE L1 6219 6601 -872 2 1047 2271 129 203 25 chr6 60639864 60640347 -88876690 + RLTR6_Mm LTR ERV1 37 605 -49 2 1047 19763 32 33 1 chr6 60640347 60642872 -88874165 + RLTR6-int LTR ERV1 1 2606 -5172 2 1047 9766 45 2 0 chr6 60642867 60644099 -88872938 + RLTR6-int LTR ERV1 5066 6299 -1479 2 1047 12011 42 1 0 chr6 60644131 60645616 -88871421 + RLTR6-int LTR ERV1 6293 7778 0 2 1047 2177 131 209 26 chr6 60645729 60646192 -88870845 + RLTR6_Mm LTR ERV1 37 584 -70 2 1047 765 338 68 85 chr6 60646192 60646532 -88870505 + Lx8 LINE L1 6624 6959 -514 2 1047 2186 161 73 8 chr6 60646532 60646927 -88870110 - MTC LTR MaLR 0 421 1 2 1047 765 338 68 85 chr6 60646927 60647310 -88869727 + Lx8 LINE L1 6960 7337 -136 2 1047 441 0 0 0 chr6 60647310 60647359 -88869678 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1047 765 338 68 85 chr6 60647359 60647459 -88869578 + Lx8 LINE L1 7338 7434 -39 2 1047 26 64 0 0 chr6 60647475 60647522 -88869515 + AT_rich Low_complexity Low_complexity 1 47 0 2 1047 347 210 240 0 chr6 60647892 60647992 -88869045 - MTD LTR MaLR -286 133 10 2 1047 354 369 22 28 chr6 60648861 60649042 -88867995 + MER2B DNA MER2_type 150 329 -7 2 1047 189 0 0 0 chr6 60649403 60649424 -88867613 + (TCC)n Simple_repeat Simple_repeat 1 21 0 2 1047 1051 124 0 11 chr6 60649424 60649603 -88867434 + (TTC)n Simple_repeat Simple_repeat 3 179 0 2 1047 360 0 0 0 chr6 60649603 60649643 -88867394 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1047 1229 209 90 23 chr6 60650047 60650346 -88866691 - Lx4B LINE L1 0 7058 6740 2 1047 1081 255 54 34 chr6 60650354 60650649 -88866388 - ORR1D1 LTR MaLR 0 374 58 2 1047 4211 46 11 6 chr6 60650649 60651171 -88865866 - L1Md_F2 LINE L1 -13 6569 6045 2 1047 435 309 79 85 chr6 60651171 60651204 -88865833 - ORR1D1 LTR MaLR -289 57 20 2 1047 468 92 0 15 chr6 60651275 60651341 -88865696 - ORR1D1-int LTR MaLR -6 1364 1300 2 1047 369 0 0 0 chr6 60651342 60651383 -88865654 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1047 573 214 14 28 chr6 60651383 60651527 -88865510 + ORR1D1-int LTR MaLR 1169 1310 -60 2 1047 2448 107 0 13 chr6 60651527 60651914 -88865123 - L1_Mm LINE L1 -907 4976 4595 2 1047 254 29 0 28 chr6 60652178 60652214 -88864823 + (CAAAAA)n Simple_repeat Simple_repeat 4 38 0 2 1047 341 132 74 29 chr6 60652214 60652292 -88864745 - ORR1D1 LTR MaLR -27 357 269 2 1047 938 263 89 16 chr6 60652292 60652604 -88864433 + ORR1D1 LTR MaLR 1 353 -14 2 1047 935 226 166 4 chr6 60652615 60652850 -88864187 - ORR1D1 LTR MaLR -96 278 6 2 1047 1661 178 33 39 chr6 60652861 60653194 -88863843 + ORR1B2 LTR MaLR 37 367 0 2 1047 1007 158 7 10 chr6 60653574 60653870 -88863167 + CT-rich Low_complexity Low_complexity 1 294 0 2 1047 186 43 0 0 chr6 60654512 60654535 -88862502 + (ATCTG)n Simple_repeat Simple_repeat 5 27 0 2 1047 601 262 64 159 chr6 60654631 60654777 -88862260 + MTD LTR MaLR 75 230 -189 2 1047 352 38 19 0 chr6 60654777 60654830 -88862207 - L1_Mus2 LINE L1 0 6566 6513 2 1047 601 262 64 159 chr6 60654830 60655042 -88861995 + MTD LTR MaLR 231 399 -20 2 1047 2175 66 11 0 chr6 60655589 60655875 -88861162 - L1Md_F2 LINE L1 -1 6581 6293 2 1047 750 276 38 48 chr6 60656309 60656518 -88860519 + MTE2b LTR MaLR 1 207 -172 2 1047 256 236 14 0 chr6 60657853 60657925 -88859112 - L1M3 LINE L1 -549 5619 5547 2 1047 601 64 177 26 chr6 60658600 60658713 -88858324 - L1Md_F2 LINE L1 -2 6580 6451 2 1047 719 295 65 65 chr6 60658842 60659597 -88857440 - L1MA4A LINE L1 -396 5907 5085 2 1047 207 0 0 0 chr6 60659998 60660021 -88857016 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1047 2971 83 0 27 chr6 60660829 60661238 -88855799 + MTB LTR MaLR 2 399 -1 2 1047 350 64 520 10 chr6 60662321 60662419 -88854618 - B2_Mm2 SINE B2 0 195 48 2 1047 1228 96 22 6 chr6 60662448 60662626 -88854411 - B2_Mm2 SINE B2 -14 181 1 2 1047 1941 107 26 0 chr6 60662631 60662939 -88854098 - MusHAL1 LINE L1 -1030 1682 1367 2 1047 534 148 37 0 chr6 60663371 60663479 -88853558 - Lx3C LINE L1 -1087 5889 5778 2 1047 5184 123 34 6 chr6 60663499 60664354 -88852683 + Lx3B LINE L1 5886 6764 -209 2 1047 965 259 61 18 chr6 60664491 60664821 -88852216 + Lx8 LINE L1 7101 7444 -29 2 1047 598 293 53 5 chr6 60665441 60665630 -88851407 + B3A SINE B2 1 198 0 2 1047 443 294 37 0 chr6 60666401 60666510 -88850527 + PB1 SINE Alu 1 113 -14 2 1047 327 204 41 81 chr6 60666510 60666548 -88850489 + Lx7 LINE L1 7275 7312 -384 2 1047 225 0 0 0 chr6 60666548 60666573 -88850464 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2 1047 327 204 41 81 chr6 60666573 60666657 -88850380 + Lx7 LINE L1 7313 7391 -305 2 1047 495 33 0 0 chr6 60666706 60666767 -88850270 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1047 253 241 0 0 chr6 60666780 60666859 -88850178 + Lx7 LINE L1 7603 7681 -15 2 1047 288 0 0 0 chr6 60666937 60666969 -88850068 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1047 200 143 24 0 chr6 60667620 60667662 -88849375 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1047 2059 306 72 47 chr6 60669496 60670359 -88846678 - Lx8 LINE L1 -37 7436 6553 2 1047 2116 127 12 0 chr6 60670359 60670681 -88846356 - ORR1A3 LTR MaLR 0 326 1 2 1047 2059 306 72 47 chr6 60670681 60670835 -88846202 - Lx8 LINE L1 -921 6552 6395 2 1047 5194 154 5 30 chr6 60671507 60672392 -88844645 - Lx3C LINE L1 -3 6973 6112 2 1047 3139 111 8 62 chr6 60672393 60672645 -88844392 + Lx3C LINE L1 5552 5797 -89 2 1047 2388 95 206 0 chr6 60672645 60673004 -88844033 - RLTR10C LTR ERVK -3 433 1 2 1047 3139 110 9 67 chr6 60673004 60673326 -88843711 + Lx3C LINE L1 5795 6092 -884 2 1047 1189 55 0 0 chr6 60676501 60676647 -88840390 + B1_Mus2 SINE Alu 2 147 0 2 1047 482 16 0 31 chr6 60676648 60676712 -88840325 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 2 1047 6535 138 38 3 chr6 60676914 60677981 -88839056 + Lx LINE L1 5540 6642 -12 2 1047 390 42 0 0 chr6 60677982 60678030 -88839007 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 2 1047 244 333 44 22 chr6 60678207 60678342 -88838695 + MIR SINE MIR 67 204 -58 2 1047 322 321 118 67 chr6 60678625 60678879 -88838158 - MER21B LTR ERV1 -210 653 387 2 1047 269 261 125 92 chr6 60679047 60679144 -88837893 + LTR48 LTR ERV1 6 105 -682 2 1047 708 12 0 0 chr6 60679144 60679225 -88837812 + (TC)n Simple_repeat Simple_repeat 1 81 0 2 1047 269 261 125 92 chr6 60679225 60679279 -88837758 + LTR48 LTR ERV1 106 161 -626 2 1047 847 23 23 23 chr6 60679699 60679831 -88837206 + (TAGA)n Simple_repeat Simple_repeat 2 133 0 2 1047 633 49 0 0 chr6 60681155 60681236 -88835801 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1047 22 0 0 0 chr6 60681693 60681715 -88835322 + AT_rich Low_complexity Low_complexity 1 22 0 2 1047 617 298 61 17 chr6 60683744 60683925 -88833112 - B3 SINE B2 -27 189 1 2 1047 1172 136 5 24 chr6 60685280 60685491 -88831546 - L1_Mus4 LINE L1 -7 6629 6423 2 1047 2740 69 0 0 chr6 60685491 60685841 -88831196 + L1_Mus4 LINE L1 6074 6423 -213 2 1047 224 91 23 0 chr6 60686050 60686094 -88830943 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2 1048 477 325 128 23 chr6 60687632 60687890 -88829147 + Lx8 LINE L1 6823 7107 -366 2 1048 209 261 29 0 chr6 60687892 60687961 -88829076 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 1048 444 19 0 0 chr6 60688266 60688319 -88828718 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1048 1188 41 0 20 chr6 60688522 60688670 -88828367 + B1_Mm SINE Alu 2 146 -1 2 1048 205 218 0 18 chr6 60689099 60689155 -88827882 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 1048 341 331 37 0 chr6 60690974 60691110 -88825927 + B1F SINE Alu 1 141 -8 2 1048 21 0 0 0 chr6 60691132 60691153 -88825884 + AT_rich Low_complexity Low_complexity 1 21 0 2 1048 184 300 0 0 chr6 60691378 60691418 -88825619 - MIR SINE MIR -220 42 3 2 1048 423 0 0 0 chr6 60691581 60691628 -88825409 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1048 258 367 91 62 chr6 60694246 60694522 -88822515 - LTR40a LTR ERVL -2 460 177 2 1048 751 192 214 6 chr6 60694525 60694698 -88822339 - B3 SINE B2 -6 210 2 2 1048 503 316 39 7 chr6 60694746 60694899 -88822138 - LTR40a LTR ERVL -345 174 17 2 1048 645 174 173 9 chr6 60694974 60695188 -88821849 - Lx9 LINE L1 -4 7640 7392 2 1048 22 35 0 0 chr6 60697123 60697152 -88819885 + AT_rich Low_complexity Low_complexity 1 29 0 2 1048 661 148 0 0 chr6 60697508 60697609 -88819428 - B1_Mus2 SINE Alu -2 145 45 2 1048 2324 171 50 0 chr6 60700262 60700724 -88816313 - Lx9 LINE L1 -1 7643 7159 2 1048 1673 226 105 70 chr6 60700859 60701373 -88815664 + RLTR31_Mur LTR ERVK 8 539 -14 2 1048 457 269 40 7 chr6 60702237 60702387 -88814650 - B4 SINE B4 0 292 138 2 1048 513 84 0 0 chr6 60703718 60703789 -88813248 + (TTTC)n Simple_repeat Simple_repeat 1 71 0 2 1048 2352 32 0 0 chr6 60706040 60706317 -88810720 - L1Md_F2 LINE L1 -330 5553 5277 2 1048 8104 50 0 3 chr6 60706318 60707310 -88809727 + L1Md_F2 LINE L1 5590 6578 -4 2 1048 25 0 0 0 chr6 60707366 60707391 -88809646 + AT_rich Low_complexity Low_complexity 1 25 0 2 1048 2073 225 113 18 chr6 60708276 60708779 -88808258 - Lx6 LINE L1 -9 7451 6901 2 1048 23 0 0 0 chr6 60708886 60708909 -88808128 + AT_rich Low_complexity Low_complexity 1 23 0 2 1048 23 0 0 0 chr6 60708923 60708946 -88808091 + AT_rich Low_complexity Low_complexity 1 23 0 2 1048 1423 56 0 20 chr6 60709355 60709557 -88807480 + L1Md_F2 LINE L1 6382 6579 -3 2 1048 243 0 0 0 chr6 60709740 60709767 -88807270 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1048 252 277 29 10 chr6 60709955 60710057 -88806980 + CT-rich Low_complexity Low_complexity 2 105 0 2 1048 357 128 11 95 chr6 60710651 60710746 -88806291 + MER2 DNA MER2_type 131 217 -128 2 1048 36 40 0 0 chr6 60711180 60711230 -88805807 + AT_rich Low_complexity Low_complexity 1 50 0 2 1048 180 0 0 0 chr6 60711268 60711288 -88805749 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 2 1048 23 33 0 0 chr6 60711293 60711323 -88805714 + AT_rich Low_complexity Low_complexity 1 30 0 2 1048 195 42 0 0 chr6 60712475 60712499 -88804538 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1048 27 0 0 0 chr6 60714317 60714344 -88802693 + AT_rich Low_complexity Low_complexity 1 27 0 2 1048 623 265 0 13 chr6 60715036 60715185 -88801852 + B1_Mur2 SINE Alu 1 147 -2 2 1048 353 255 92 0 chr6 60715331 60715429 -88801608 - Lx9 LINE L1 -626 7018 6912 2 1048 371 292 16 63 chr6 60715518 60715708 -88801329 - Lx9 LINE L1 -453 7191 7011 2 1048 581 304 13 43 chr6 60715708 60715938 -88801099 + Lx9 LINE L1 6785 7007 -637 2 1048 417 39 0 0 chr6 60716146 60716197 -88800840 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1048 294 330 22 11 chr6 60716300 60716392 -88800645 - MIR SINE MIR -89 173 81 3 1048 22 56 0 0 chr6 60717060 60717096 -88799941 + AT_rich Low_complexity Low_complexity 1 36 0 3 1048 1090 62 7 20 chr6 60717883 60718031 -88799006 + B1_Mus1 SINE Alu 3 148 0 3 1048 351 0 0 0 chr6 60721352 60721391 -88795646 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 3 1048 252 0 0 0 chr6 60722540 60722568 -88794469 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1048 22 80 0 0 chr6 60722586 60722636 -88794401 + AT_rich Low_complexity Low_complexity 1 50 0 3 1048 5110 75 3 0 chr6 60722726 60723403 -88793634 - L1_Mm LINE L1 -501 5382 4704 3 1048 6327 71 0 0 chr6 60723401 60724216 -88792821 - L1_Mm LINE L1 -682 5201 4387 3 1048 1758 64 0 0 chr6 60724211 60724431 -88792606 + L1Md_F2 LINE L1 5367 5586 -297 3 1048 8006 52 0 7 chr6 60724431 60725434 -88791603 + L1Md_F2 LINE L1 5587 6582 0 3 1048 272 305 53 41 chr6 60725474 60725645 -88791392 + L1MA5 LINE L1 5943 6115 -185 3 1048 564 335 69 11 chr6 60725832 60726092 -88790945 - B4 SINE B4 -15 277 3 3 1048 225 0 0 0 chr6 60726259 60726284 -88790753 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1048 363 78 0 0 chr6 60726699 60726750 -88790287 + (CAA)n Simple_repeat Simple_repeat 1 51 0 3 1048 257 261 45 0 chr6 60728420 60728539 -88788498 + (TA)n Simple_repeat Simple_repeat 1 124 0 3 1048 379 266 18 8 chr6 60728865 60728962 -88788075 + PB1D10 SINE Alu 3 99 -50 3 1048 414 0 0 0 chr6 60729075 60729121 -88787916 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1048 553 301 13 19 chr6 60730073 60730232 -88786805 - RSINE1 SINE B4 -5 160 3 3 1048 1039 103 209 31 chr6 60730764 60730955 -88786082 - URR1A DNA MER1_type 0 226 2 3 1048 997 196 18 57 chr6 60731939 60732166 -88784871 + Lx5 LINE L1 6785 7002 -48 3 1048 504 307 152 0 chr6 60732820 60733051 -88783986 + B4A SINE B4 20 285 -7 3 1048 620 182 8 0 chr6 60733067 60733199 -88783838 + (TA)n Simple_repeat Simple_repeat 2 134 0 3 1048 384 59 0 0 chr6 60733229 60733280 -88783757 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3 1048 906 281 5 5 chr6 60734782 60734993 -88782044 - B3 SINE B2 0 216 6 3 1048 705 261 53 15 chr6 60735467 60735673 -88781364 + B3 SINE B2 3 216 0 3 1048 30 0 0 0 chr6 60735747 60735777 -88781260 + AT_rich Low_complexity Low_complexity 1 30 0 3 1048 28 61 0 0 chr6 60736263 60736312 -88780725 + AT_rich Low_complexity Low_complexity 1 49 0 3 1048 211 149 0 60 chr6 60736635 60736685 -88780352 + T-rich Low_complexity Low_complexity 5 51 0 3 1048 334 272 45 80 chr6 60736685 60736797 -88780240 - B1F2 SINE Alu 0 149 42 3 1048 347 311 161 10 chr6 60738297 60738489 -88778548 - HAL1-3A_ME LINE L1 -658 2200 1980 3 1048 852 42 0 24 chr6 60738950 60739073 -88777964 + L1Md_F2 LINE L1 6461 6580 -2 3 1048 225 0 0 0 chr6 60741082 60741107 -88775930 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1048 5251 63 0 1 chr6 60741198 60741869 -88775168 + L1_Mus2 LINE L1 5625 6294 -272 3 1048 1615 162 81 13 chr6 60745332 60745639 -88771398 - Lx4A LINE L1 0 7058 6731 3 1048 4846 55 11 3 chr6 60745812 60746428 -88770609 - L1Md_F2 LINE L1 -15 6567 5947 3 1048 775 285 65 49 chr6 60746721 60747113 -88769924 - L1MC2 LINE L1 -348 5996 5593 3 1048 189 0 0 0 chr6 60747113 60747134 -88769903 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1048 775 285 65 49 chr6 60747134 60747169 -88769868 - L1MC2 LINE L1 -752 5592 5562 3 1048 192 97 0 0 chr6 60747392 60747423 -88769614 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1048 1071 82 0 14 chr6 60747429 60747577 -88769460 - B1_Mus2 SINE Alu -1 146 1 3 1048 193 29 0 56 chr6 60749467 60749503 -88767534 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 3 1048 1974 206 14 0 chr6 60749993 60750361 -88766676 + ORR1C1 LTR MaLR 6 378 0 3 1048 387 0 0 0 chr6 60750766 60750809 -88766228 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1048 381 58 0 0 chr6 60750809 60750861 -88766176 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 1048 565 287 102 30 chr6 60751459 60751775 -88765262 + MLT1A1 LTR MaLR 26 406 -2 3 1048 25 31 0 0 chr6 60752015 60752047 -88764990 + AT_rich Low_complexity Low_complexity 1 32 0 3 1048 1088 80 0 0 chr6 60752114 60752252 -88764785 + B1_Mus1 SINE Alu 2 139 -9 3 1048 263 28 28 0 chr6 60752252 60752288 -88764749 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1048 1045 280 27 91 chr6 60753697 60754102 -88762935 + MTE2b LTR MaLR 1 379 0 3 1048 2410 57 0 0 chr6 60755284 60755584 -88761453 + L1Md_F2 LINE L1 6268 6567 -15 3 1048 207 214 24 0 chr6 60756452 60756494 -88760543 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1048 1965 133 34 3 chr6 60756661 60756986 -88760051 + Lx2 LINE L1 6663 6997 0 3 1048 656 101 92 0 chr6 60757775 60757884 -88759153 - L1Md_F2 LINE L1 -12 6570 6452 3 1048 615 158 44 22 chr6 60758627 60758763 -88758274 + Lx3A LINE L1 6836 6974 -7 3 1048 25 0 0 0 chr6 60758815 60758840 -88758197 + AT_rich Low_complexity Low_complexity 1 25 0 3 1048 698 282 176 72 chr6 60759597 60760520 -88756517 + L1MA9 LINE L1 4223 5242 -901 3 1048 2779 200 90 11 chr6 60760521 60761199 -88755838 + Lx7 LINE L1 6944 7688 -8 3 1048 513 296 24 0 chr6 60761224 60761349 -88755688 + B4A SINE B4 1 128 -164 3 1048 225 209 32 25 chr6 60761437 60761594 -88755443 + (CA)n Simple_repeat Simple_repeat 2 159 0 3 1048 1105 265 131 40 chr6 60761606 60762234 -88754803 + L1MA9 LINE L1 5335 6019 -293 3 1048 39 50 0 0 chr6 60762460 60762520 -88754517 + AT_rich Low_complexity Low_complexity 1 60 0 3 1048 1383 98 0 5 chr6 60762629 60762824 -88754213 + B2_Mm2 SINE B2 2 195 0 3 1048 240 312 65 0 chr6 60763972 60764049 -88752988 + Charlie24 DNA MER1_type 2348 2429 -21 3 1048 208 389 92 33 chr6 60764535 60764870 -88752167 - L2a LINE L2 0 3426 3072 3 1048 932 88 73 0 chr6 60766439 60766576 -88750461 + B1_Mm SINE Alu 1 147 0 3 1048 23 68 0 0 chr6 60767861 60767905 -88749132 + AT_rich Low_complexity Low_complexity 1 44 0 3 1048 236 278 165 0 chr6 60769071 60769168 -88747869 - MIRb SINE MIR -82 186 74 3 1048 324 276 136 35 chr6 60769389 60769588 -88747449 - L1P5 LINE L1 -371 5785 5567 3 1048 345 292 241 4 chr6 60770258 60770489 -88746548 + RMER20B LTR ERVK 231 516 0 3 1048 226 148 37 0 chr6 60770556 60770610 -88746427 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 1048 1605 270 25 17 chr6 60771074 60771481 -88745556 - MTD LTR MaLR -4 415 6 3 1048 24 0 0 0 chr6 60771646 60771670 -88745367 + AT_rich Low_complexity Low_complexity 1 24 0 3 1048 472 262 213 51 chr6 60772051 60772365 -88744672 - Tigger6b DNA MER2_type -1 1596 1232 3 1048 802 219 87 9 chr6 60772384 60772614 -88744423 - ORR1D1 LTR MaLR -126 248 1 3 1048 901 357 22 8 chr6 60772918 60773288 -88743749 - Tigger6b DNA MER2_type -1164 433 61 3 1048 1281 111 131 0 chr6 60773398 60773597 -88743440 + Lx2 LINE L1 6360 6584 -413 3 1048 1746 146 123 0 chr6 60773597 60773913 -88743124 + Lx LINE L1 6298 6652 -2 3 1048 256 213 63 51 chr6 60774771 60774850 -88742187 - ID4_ SINE ID -2 81 2 3 1048 728 66 19 0 chr6 60776763 60776869 -88740168 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 3 1048 779 94 8 0 chr6 60776869 60776995 -88740042 + (TG)n Simple_repeat Simple_repeat 1 128 0 3 1048 333 0 0 0 chr6 60776995 60777031 -88740006 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1048 345 24 0 0 chr6 60777031 60777072 -88739965 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1048 454 264 0 28 chr6 60777072 60777181 -88739856 - ID_B1 SINE B4 -21 203 98 3 1048 324 0 0 0 chr6 60780004 60780040 -88736997 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 1048 270 237 0 0 chr6 60782138 60782214 -88734823 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1048 590 305 62 12 chr6 60783660 60783847 -88733190 - B3A SINE B2 -30 186 5 3 1048 180 0 0 0 chr6 60784941 60784961 -88732076 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 1048 21 57 0 0 chr6 60785281 60785316 -88731721 + AT_rich Low_complexity Low_complexity 1 35 0 3 1048 1111 70 0 7 chr6 60785902 60786046 -88730991 + B1_Mus1 SINE Alu 5 147 -1 3 1048 942 281 181 20 chr6 60786433 60786782 -88730255 + MTD LTR MaLR 1 405 -14 3 1048 2078 267 44 58 chr6 60786795 60787515 -88729522 + MTD-int LTR MaLR 1 710 -660 3 1048 3102 191 70 18 chr6 60787516 60788229 -88728808 + Lx9 LINE L1 6749 7498 -146 3 1048 4440 211 50 52 chr6 60788379 60789601 -88727436 + Lx9 LINE L1 6424 7642 -2 3 1048 425 265 7 114 chr6 60790098 60790247 -88726790 + MTD-int LTR MaLR 886 1018 -562 3 1048 431 256 0 0 chr6 60790225 60790311 -88726726 - ORR1D-int LTR MaLR -438 932 847 3 1048 485 186 12 0 chr6 60790333 60790419 -88726618 + ORR1D2 LTR MaLR 284 370 0 3 1048 807 162 280 20 chr6 60791459 60791729 -88725308 + RMER6C LTR ERVK 1 345 -345 3 1048 219 114 0 0 chr6 60791729 60791764 -88725273 + (CAGTT)n Simple_repeat Simple_repeat 4 38 0 3 1048 609 164 132 28 chr6 60791764 60791784 -88725253 + RMER6C LTR ERVK 346 364 -326 3 1048 279 266 107 36 chr6 60791798 60791966 -88725071 + L1_Mur2 LINE L1 4886 5065 -812 3 1048 2846 109 11 9 chr6 60792089 60792532 -88724505 + Lx3_Mus LINE L1 6413 6856 -153 3 1048 854 263 40 25 chr6 60792532 60792856 -88724181 + L1_Rod LINE L1 5388 5716 -131 3 1048 2307 136 43 26 chr6 60792861 60793328 -88723709 - RMER6A LTR ERVK 0 756 282 3 1048 375 78 0 0 chr6 60793347 60793398 -88723639 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1048 3639 132 47 8 chr6 60793422 60794017 -88723020 - Lx LINE L1 -15 6639 6022 3 1048 580 337 73 32 chr6 60794017 60794425 -88722612 + Lx8 LINE L1 6934 7358 -115 3 1048 883 250 63 45 chr6 60794623 60794891 -88722146 + MLT1B LTR MaLR 108 380 -10 3 1048 1031 224 5 0 chr6 60795116 60795321 -88721716 + B3 SINE B2 1 206 -10 4 1048 265 203 0 26 chr6 60795922 60795998 -88721039 + (TTGG)n Simple_repeat Simple_repeat 2 75 0 4 1048 414 0 0 0 chr6 60796224 60796270 -88720767 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1048 215 398 19 10 chr6 60796589 60796612 -88720425 + B4A SINE B4 63 86 -206 4 1048 302 311 84 37 chr6 60796612 60796719 -88720318 + B1F SINE Alu 1 112 -8 4 1048 4134 113 54 2 chr6 60796787 60797400 -88719637 - L1_Mus4 LINE L1 -4 6632 5988 4 1048 304 220 50 99 chr6 60798602 60798723 -88718314 + MTD LTR MaLR 1 115 -304 4 1048 908 262 126 110 chr6 60799061 60799370 -88717667 + MTD LTR MaLR 62 405 -14 4 1048 749 266 55 88 chr6 60799375 60799647 -88717390 + MTD-int LTR MaLR 2 264 -994 4 1048 739 125 0 0 chr6 60799647 60799759 -88717278 + L1VL1 LINE L1 218 329 -6093 4 1048 6359 91 10 0 chr6 60799757 60800680 -88716357 + L1_Mus3 LINE L1 5701 6632 -6 4 1048 1460 262 34 125 chr6 60800712 60801389 -88715648 + MTD-int LTR MaLR 578 1538 -425 4 1048 275 311 66 11 chr6 60801505 60801595 -88715442 + MTD LTR MaLR 25 119 -300 4 1048 1939 265 91 21 chr6 60801595 60802154 -88714883 - RMER19B LTR ERVK 0 902 305 4 1048 386 287 73 85 chr6 60802130 60802294 -88714743 + MTD LTR MaLR 58 229 -190 4 1048 801 293 49 20 chr6 60802294 60802639 -88714398 - Lx9 LINE L1 -679 6965 6611 4 1048 560 285 26 53 chr6 60802640 60802866 -88714171 + Lx9 LINE L1 6982 7201 -443 4 1048 1318 297 56 26 chr6 60802938 60803853 -88713184 + Lx6 LINE L1 17 675 -7053 4 1048 5321 161 28 25 chr6 60803873 60803924 -88713113 + Lx6 LINE L1 3001 3055 -2825 4 1048 1155 61 0 0 chr6 60803924 60804089 -88712948 + (GA)n Simple_repeat Simple_repeat 2 166 0 4 1048 5321 161 28 25 chr6 60804089 60805193 -88711844 + Lx6 LINE L1 3056 4159 -1721 4 1048 7144 210 69 17 chr6 60805189 60807651 -88709386 + Lx6 LINE L1 4841 7447 -13 4 1048 891 67 0 0 chr6 60807651 60807770 -88709267 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 4 1048 7144 229 54 17 chr6 60807770 60807784 -88709253 + Lx6 LINE L1 7448 7459 -1 4 1048 574 226 86 40 chr6 60808085 60808260 -88708777 + MTD LTR MaLR 223 405 -14 4 1048 1786 109 146 7 chr6 60808289 60808576 -88708461 + ORR1A4 LTR MaLR 3 329 0 4 1048 1301 190 99 31 chr6 60808791 60809124 -88707913 - ORR1C2 LTR MaLR 0 384 5 4 1048 401 296 34 91 chr6 60809867 60810075 -88706962 - RMER12 LTR ERVK -26 1296 1101 4 1048 5307 73 20 80 chr6 60810325 60810583 -88706454 - RLTR22_Mus LTR ERVK -1000 808 618 4 1048 1242 41 0 0 chr6 60810583 60810730 -88706307 - B1_Mus2 SINE Alu 0 147 1 4 1048 5307 73 20 80 chr6 60810730 60811331 -88705706 - RLTR22_Mus LTR ERVK -1191 617 1 4 1048 400 276 18 37 chr6 60811492 60811601 -88705436 + RSINE1 SINE B4 2 108 -57 4 1048 575 51 13 0 chr6 60811624 60811703 -88705334 + (GA)n Simple_repeat Simple_repeat 2 81 0 4 1048 517 357 35 26 chr6 60811869 60812096 -88704941 - B4A SINE B4 -62 230 2 4 1048 198 71 0 0 chr6 60813349 60813377 -88703660 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1048 255 256 48 24 chr6 60814641 60814725 -88702312 + MT2B LTR ERVL 377 462 -139 4 1048 8271 111 30 8 chr6 60814725 60816083 -88700954 + L1_Mm LINE L1 4004 5390 -493 4 1048 2400 38 0 0 chr6 60816596 60816885 -88700152 + L1Md_A LINE L1 6293 6581 -1 4 1048 255 31 0 0 chr6 60816988 60817020 -88700017 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1048 190 179 18 18 chr6 60817348 60817405 -88699632 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 1049 313 248 62 0 chr6 60817413 60817558 -88699479 + (TCTA)n Simple_repeat Simple_repeat 4 157 0 4 1049 956 289 98 32 chr6 60818705 60819177 -88697860 - Lx9 LINE L1 -2 7642 7140 4 1049 303 28 0 0 chr6 60820248 60820284 -88696753 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1049 237 286 0 31 chr6 60821620 60821685 -88695352 + polypurine Low_complexity Low_complexity 3 65 0 4 1049 1747 54 18 0 chr6 60822482 60822704 -88694333 - L1_Mus1 LINE L1 -1 6566 6341 4 1049 896 74 0 0 chr6 60822704 60822826 -88694211 + L1_Mus1 LINE L1 6199 6320 -247 4 1049 1198 303 61 47 chr6 60822831 60824179 -88692858 - L1M2 LINE L1 -650 5641 4238 4 1049 2023 114 38 35 chr6 60824184 60824503 -88692534 + RMER17B LTR ERVK 15 334 -624 4 1049 3766 62 0 4 chr6 60824503 60824987 -88692050 - L1Md_F2 LINE L1 0 6582 6101 4 1049 30696 52 16 4 chr6 60824987 60829826 -88687211 - L1Md_F2 LINE L1 -764 5119 263 4 1049 404 164 0 0 chr6 60829827 60829900 -88687137 - L1Md_F2 LINE L1 -6291 325 253 4 1049 3397 159 34 74 chr6 60829901 60830701 -88686336 + RMER17B LTR ERVK 191 958 0 4 1049 3687 60 2 2 chr6 60831191 60831656 -88685381 - L1Md_F3 LINE L1 -14 6570 6106 4 1049 606 245 28 0 chr6 60832077 60832220 -88684817 + B1_Mur3 SINE Alu 2 148 -1 4 1049 21 0 0 0 chr6 60833100 60833121 -88683916 + AT_rich Low_complexity Low_complexity 1 21 0 4 1049 351 0 0 0 chr6 60833699 60833738 -88683299 + (TAA)n Simple_repeat Simple_repeat 1 39 0 4 1049 211 173 189 19 chr6 60833738 60833782 -88683255 + B1F1 SINE Alu 45 98 -51 4 1049 288 0 0 0 chr6 60833784 60833816 -88683221 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1049 1031 153 150 6 chr6 60834382 60834648 -88682389 + ORR1B1 LTR MaLR 1 394 0 4 1049 522 332 160 42 chr6 60834648 60834936 -88682101 + L1MEc LINE L1 1127 1467 -4933 4 1049 1013 133 78 6 chr6 60834936 60835102 -88681935 + B2_Mm2 SINE B2 1 178 -17 4 1049 522 332 160 42 chr6 60835102 60835238 -88681799 + L1MEc LINE L1 1468 1601 -4799 4 1049 343 104 0 0 chr6 60835283 60835331 -88681706 + tRNA-Gly-GGA tRNA tRNA 1 48 -27 4 1049 272 294 75 58 chr6 60835355 60835731 -88681306 + L1MEc LINE L1 1711 2092 -4308 4 1049 552 314 107 62 chr6 60836169 60836427 -88680610 - MLT1E3 LTR MaLR -74 550 332 4 1049 288 328 133 13 chr6 60836597 60836912 -88680125 + L1MEc LINE L1 2627 2979 -3340 4 1049 380 306 0 0 chr6 60836958 60837069 -88679968 + (CA)n Simple_repeat Simple_repeat 2 112 0 4 1049 228 344 165 16 chr6 60837118 60837245 -88679792 - L2b LINE L2 -300 3075 2930 4 1049 267 75 0 0 chr6 60837721 60837755 -88679282 + (TA)n Simple_repeat Simple_repeat 1 34 0 4 1049 294 29 0 0 chr6 60837755 60837790 -88679247 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1049 246 284 12 36 chr6 60837894 60837978 -88679059 + ID4_ SINE ID 2 83 0 4 1049 3029 110 0 15 chr6 60838912 60839382 -88677655 + Lx2 LINE L1 5643 6105 -892 4 1049 3689 60 23 4 chr6 60839443 60839930 -88677107 + LTRIS2 LTR ERV1 69 564 0 4 1049 1372 132 19 122 chr6 60839930 60840250 -88676787 - RLTRETN_Mm LTR ERVK -29 293 7 4 1049 5794 71 18 36 chr6 60840250 60841196 -88675841 - MMVL30-int LTR ERV1 -1520 2178 960 4 1049 5310 63 20 8 chr6 60841283 60842035 -88675002 - MMVL30-int LTR ERV1 -2245 1453 693 4 1049 848 178 27 24 chr6 60842071 60842300 -88674737 - MMVL30-int LTR ERV1 -7105 347 117 4 1049 584 202 207 48 chr6 60842429 60842700 -88674337 - RLTR6_Mm LTR ERV1 -65 589 276 4 1049 790 149 12 99 chr6 60842713 60842884 -88674153 - RLTR6_Mm LTR ERV1 -498 156 1 4 1049 5140 148 6 12 chr6 60842884 60843740 -88673297 + Lx2 LINE L1 6147 6997 0 4 1049 918 271 110 18 chr6 60843879 60844262 -88672775 + MTD LTR MaLR 2 419 0 4 1049 205 96 112 0 chr6 60844372 60844497 -88672540 + (TA)n Simple_repeat Simple_repeat 1 139 0 4 1049 220 134 43 43 chr6 60844501 60844571 -88672466 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 4 1049 626 134 43 0 chr6 60844577 60844741 -88672296 + (TA)n Simple_repeat Simple_repeat 2 172 0 4 1049 2133 122 6 30 chr6 60844749 60845080 -88671957 + ORR1A2 LTR MaLR 1 323 -4 4 1049 243 42 61 20 chr6 60845269 60845318 -88671719 + (CAAAAA)n Simple_repeat Simple_repeat 6 56 0 4 1049 312 171 0 0 chr6 60845765 60845847 -88671190 + GA-rich Low_complexity Low_complexity 1 82 0 4 1049 1741 188 26 48 chr6 60845861 60846280 -88670757 - RMER17C LTR ERVK 0 410 1 4 1049 4741 102 44 0 chr6 60846485 60847679 -88669358 + L1Md_F2 LINE L1 374 1628 -4255 4 1049 1804 104 7 336 chr6 60847679 60848387 -88668650 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1049 26096 78 5 51 chr6 60848387 60852543 -88664494 + L1Md_F2 LINE L1 1623 5586 -297 4 1049 7308 67 25 10 chr6 60852544 60853445 -88663592 + L1Md_F2 LINE L1 5588 6481 -101 4 1049 243 61 0 0 chr6 60853445 60853478 -88663559 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 4 1049 7308 67 25 10 chr6 60853478 60853545 -88663492 + L1Md_F2 LINE L1 6482 6568 -14 4 1049 3806 101 0 41 chr6 60853546 60854136 -88662901 + L1Md_F2 LINE L1 6005 6570 -12 4 1049 3953 106 2 10 chr6 60854138 60854720 -88662317 + L1Md_F2 LINE L1 6005 6581 -1 4 1049 941 219 33 19 chr6 60855586 60855796 -88661241 - RLTR42 LTR ERVK -25 214 2 4 1049 645 201 0 79 chr6 60855797 60855975 -88661062 - RLTR42-int LTR ERVK 0 5522 5359 4 1049 3430 181 34 12 chr6 60856015 60856752 -88660285 - RLTR42-int LTR ERVK -314 5208 4456 4 1049 1048 150 11 11 chr6 60856756 60856938 -88660099 - URR1B DNA MER1_type 0 225 44 4 1049 2615 157 55 7 chr6 60856938 60857226 -88659811 - RLTR42-int LTR ERVK -1929 3593 3295 4 1049 2798 80 28 5 chr6 60857226 60857617 -88659420 - MTB LTR MaLR 0 400 1 4 1049 2615 157 55 7 chr6 60857617 60857872 -88659165 - RLTR42-int LTR ERVK -2228 3294 3025 4 1049 6361 41 39 0 chr6 60857883 60858661 -88658376 - RLTR13C2 LTR ERVK 0 808 1 4 1049 362 265 76 106 chr6 60858799 60859035 -88658002 + RLTR14 LTR ERV1 154 382 0 4 1049 2660 195 221 37 chr6 60859035 60859818 -88657219 - RLTR42-int LTR ERVK -2495 3027 2102 4 1049 1145 82 7 0 chr6 60859818 60859965 -88657072 - B1_Mus1 SINE Alu 0 148 1 4 1049 2660 165 16 64 chr6 60859965 60860282 -88656755 - RLTR42-int LTR ERVK -3421 2101 1797 4 1049 335 140 0 0 chr6 60860326 60860376 -88656661 - RLTR42-int LTR ERVK -3727 1795 1746 4 1049 32645 73 3 6 chr6 60860411 60864612 -88652425 + L1Md_F3 LINE L1 446 4609 -1274 4 1049 2459 55 31 3 chr6 60864612 60864939 -88652098 + L1Md_F3 LINE L1 6235 6570 -14 4 1049 32645 51 3 5 chr6 60864939 60865934 -88651103 + L1Md_F3 LINE L1 4610 5585 -298 4 1049 7969 47 7 1 chr6 60865935 60866927 -88650110 + L1Md_F3 LINE L1 5587 6584 0 4 1049 1619 159 23 7 chr6 60866968 60867278 -88649759 - RLTR42-int LTR ERVK -3800 1722 1408 4 1049 23 0 0 0 chr6 60867282 60867305 -88649732 + AT_rich Low_complexity Low_complexity 1 23 0 4 1049 354 55 0 6 chr6 60867452 60867502 -88649535 - L1_Mur2 LINE L1 -1693 2221 2170 4 1049 2366 164 73 35 chr6 60867502 60867699 -88649338 - RLTR42-int LTR ERVK -4158 1364 1167 4 1049 1532 27 33 0 chr6 60867699 60867882 -88649155 - B2_Mm1a SINE B2 -3 190 2 4 1049 2366 164 73 35 chr6 60867882 60868201 -88648836 - RLTR42-int LTR ERVK -4356 1166 828 4 1049 192 229 11 88 chr6 60868201 60868292 -88648745 + L3 LINE CR1 2276 2359 -2130 4 1049 612 320 35 31 chr6 60868297 60868587 -88648450 - RLTR42-int LTR ERVK -4789 733 443 4 1049 1055 245 165 0 chr6 60868625 60868952 -88648085 - RLTR42-int LTR ERVK -5141 381 1 4 1049 910 254 12 56 chr6 60868952 60869202 -88647835 - RLTR42 LTR ERVK 0 239 1 4 1049 209 271 42 0 chr6 60869555 60869651 -88647386 + (TA)n Simple_repeat Simple_repeat 2 101 0 4 1049 906 115 69 0 chr6 60869731 60869861 -88647176 + B1_Mus1 SINE Alu 1 139 -9 4 1049 1734 233 32 5 chr6 60870482 60870861 -88646176 + Lx6 LINE L1 6882 7270 -190 4 1049 568 242 188 50 chr6 60870861 60871100 -88645937 - RLTR10A LTR ERVK 0 411 140 4 1049 518 260 10 0 chr6 60871409 60871513 -88645524 - B1_Mur2 SINE Alu -43 106 2 4 1049 318 308 0 96 chr6 60871412 60871527 -88645510 - MT2B LTR ERVL -345 256 153 4 1049 2275 203 22 28 chr6 60871613 60872106 -88644931 + RMER5 LTR ERV1 1 490 -44 4 1049 369 0 0 0 chr6 60872656 60872697 -88644340 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 4 1049 580 91 0 0 chr6 60872697 60872774 -88644263 - B1_Mur4 SINE Alu -12 138 62 4 1049 333 0 0 0 chr6 60872777 60872814 -88644223 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 4 1049 963 126 0 0 chr6 60872814 60872949 -88644088 - B1_Mus1 SINE Alu -12 136 2 4 1049 1413 51 0 7 chr6 60872989 60873267 -88643770 + (TTCTCC)n Simple_repeat Simple_repeat 1 276 0 4 1049 21 36 0 0 chr6 60873453 60873481 -88643556 + AT_rich Low_complexity Low_complexity 1 28 0 4 1049 21 0 0 0 chr6 60873506 60873527 -88643510 + AT_rich Low_complexity Low_complexity 1 21 0 5 1049 21 82 0 0 chr6 60873806 60873855 -88643182 + AT_rich Low_complexity Low_complexity 1 49 0 5 1049 24 0 0 0 chr6 60874347 60874371 -88642666 + AT_rich Low_complexity Low_complexity 1 24 0 5 1049 2754 27 72 3 chr6 60874698 60875029 -88642008 - IAPEY2_LTR LTR ERVK -3 354 1 5 1049 21 95 0 0 chr6 60875045 60875108 -88641929 + AT_rich Low_complexity Low_complexity 1 63 0 5 1049 333 0 0 0 chr6 60875545 60875582 -88641455 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1049 25 0 0 0 chr6 60876181 60876206 -88640831 + AT_rich Low_complexity Low_complexity 1 25 0 5 1049 2021 236 82 12 chr6 60876771 60877259 -88639778 + RMER5 LTR ERV1 13 534 0 5 1049 620 263 23 28 chr6 60879221 60879397 -88637640 + MTD LTR MaLR 14 188 -231 5 1049 1249 169 163 19 chr6 60879373 60879738 -88637299 + RMER10A LTR ERVL 11 434 -8 5 1049 561 50 132 0 chr6 60879738 60879859 -88637178 + CT-rich Low_complexity Low_complexity 1 137 0 5 1049 1240 34 0 43 chr6 60879860 60880047 -88636990 + (TTTCC)n Simple_repeat Simple_repeat 1 179 0 5 1049 721 184 99 0 chr6 60880101 60880253 -88636784 + MTD LTR MaLR 239 405 -14 5 1049 328 229 0 0 chr6 60880265 60880326 -88636711 + MTD-int LTR MaLR 1 61 -1309 5 1049 835 196 86 6 chr6 60880322 60880496 -88636541 - RLTR14 LTR ERV1 -194 188 1 5 1049 345 321 80 4 chr6 60880727 60880952 -88636085 - L1MEg LINE L1 -1781 4365 4124 5 1049 470 45 0 43 chr6 60881033 60881103 -88635934 + (TTTA)n Simple_repeat Simple_repeat 3 69 0 5 1049 338 143 16 0 chr6 60881186 60881249 -88635788 + CT-rich Low_complexity Low_complexity 2 65 0 5 1049 1172 254 91 43 chr6 60881401 60881751 -88635286 - ORR1D2 LTR MaLR 0 370 4 5 1049 180 0 0 0 chr6 60882903 60882923 -88634114 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1049 1037 96 0 58 chr6 60882927 60883082 -88633955 - B1_Mus2 SINE Alu 0 147 2 5 1049 348 315 96 88 chr6 60883569 60883762 -88633275 - L1MEg LINE L1 -4523 1719 1533 5 1049 4174 130 63 50 chr6 60883762 60884538 -88632499 - Lx3A LINE L1 -8 6973 6188 5 1049 348 315 96 88 chr6 60884538 60884730 -88632307 - L1MEg LINE L1 -4710 1532 1331 5 1049 216 0 0 0 chr6 60885424 60885448 -88631589 + (CATG)n Simple_repeat Simple_repeat 3 26 0 5 1049 535 316 114 41 chr6 60885516 60885859 -88631178 + LTR53 LTR ERVL 1 368 -151 5 1049 472 206 120 0 chr6 60886005 60886097 -88630940 + B3A SINE B2 1 103 -95 5 1049 8036 37 0 5 chr6 60886099 60887826 -88629211 - L1Md_F2 LINE L1 0 6582 4863 5 1049 821 72 7 61 chr6 60887874 60888021 -88629016 + L1Md_F2 LINE L1 6444 6582 0 5 1049 282 56 0 0 chr6 60888274 60888310 -88628727 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1049 888 83 0 0 chr6 60888310 60888430 -88628607 - L1Md_F2 LINE L1 -1007 4876 4757 5 1049 496 308 25 0 chr6 60888433 60888553 -88628484 + B3 SINE B2 92 214 -2 5 1049 983 105 0 79 chr6 60888562 60888727 -88628310 + B2_Mm2 SINE B2 2 153 -42 5 1049 279 0 0 0 chr6 60888736 60888767 -88628270 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1049 318 331 49 14 chr6 60888940 60889084 -88627953 + MTD LTR MaLR 31 179 -240 5 1049 295 256 50 57 chr6 60889116 60889268 -88627769 + MTD LTR MaLR 225 419 0 5 1049 822 39 0 0 chr6 60889402 60889504 -88627533 + (TTCCC)n Simple_repeat Simple_repeat 5 106 0 5 1049 380 277 18 29 chr6 60889848 60890019 -88627018 + (TG)n Simple_repeat Simple_repeat 2 170 0 5 1049 336 290 204 59 chr6 60890081 60890301 -88626736 - B4A SINE B4 0 292 41 5 1049 4145 229 38 35 chr6 60890481 60891466 -88625571 + Lx6 LINE L1 6474 7460 0 5 1049 1678 199 78 30 chr6 60891505 60891877 -88625160 - MTC LTR MaLR -31 390 1 5 1049 338 234 176 9 chr6 60891878 60891986 -88625051 + Lx8 LINE L1 6777 6902 -571 5 1049 488 149 11 0 chr6 60892066 60892160 -88624877 + CT-rich Low_complexity Low_complexity 2 96 0 5 1049 311 354 60 13 chr6 60892166 60892315 -88624722 - HAL1-3A_ME LINE L1 -419 2439 2284 5 1049 24 0 0 0 chr6 60893340 60893364 -88623673 + AT_rich Low_complexity Low_complexity 1 24 0 5 1049 402 21 0 0 chr6 60894027 60894074 -88622963 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1049 21 71 0 0 chr6 60896353 60896395 -88620642 + AT_rich Low_complexity Low_complexity 1 42 0 5 1049 498 17 0 0 chr6 60897523 60897582 -88619455 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1049 852 161 22 0 chr6 60897582 60897719 -88619318 - B1_Mur4 SINE Alu -10 140 1 5 1049 192 152 0 0 chr6 60898637 60898670 -88618367 + T-rich Low_complexity Low_complexity 1 33 0 5 1049 1115 75 0 7 chr6 60898694 60898841 -88618196 - B1_Mus2 SINE Alu -1 146 1 5 1049 216 311 0 159 chr6 60899727 60899853 -88617184 - PB1D7 SINE Alu -10 110 5 5 1049 423 257 97 0 chr6 60899743 60899856 -88617181 - ID_B1 SINE B4 -18 206 83 5 1049 542 15 0 15 chr6 60900738 60900806 -88616231 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1049 16422 9 0 0 chr6 60900948 60903502 -88613535 - L1Md_A LINE L1 0 6582 4029 5 1049 23 54 0 0 chr6 60904400 60904437 -88612600 + AT_rich Low_complexity Low_complexity 1 37 0 5 1049 459 0 0 0 chr6 60904523 60904574 -88612463 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1049 551 238 124 6 chr6 60904618 60904787 -88612250 - Lx9 LINE L1 -203 7441 7253 5 1049 21 36 0 0 chr6 60908538 60908566 -88608471 + AT_rich Low_complexity Low_complexity 1 28 0 5 1049 237 179 36 0 chr6 60908679 60908735 -88608302 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 5 1049 297 169 0 0 chr6 60910115 60910174 -88606863 + CT-rich Low_complexity Low_complexity 1 59 0 5 1049 26 0 0 0 chr6 60911064 60911090 -88605947 + AT_rich Low_complexity Low_complexity 1 26 0 5 1049 200 209 0 0 chr6 60912181 60912224 -88604813 + A-rich Low_complexity Low_complexity 2 44 0 5 1049 204 188 0 0 chr6 60913334 60913366 -88603671 + polypyrimidine Low_complexity Low_complexity 3 34 0 5 1049 243 152 0 102 chr6 60913576 60913664 -88603373 + (GTTTG)n Simple_repeat Simple_repeat 3 81 0 5 1049 200 309 0 0 chr6 60913681 60913736 -88603301 + GA-rich Low_complexity Low_complexity 1 55 0 5 1049 738 0 0 0 chr6 60915063 60915145 -88601892 + (GAA)n Simple_repeat Simple_repeat 2 83 0 5 1049 1212 190 190 34 chr6 60916048 60916206 -88600831 + ORR1C2 LTR MaLR 8 182 -202 5 1049 549 0 0 0 chr6 60916206 60916267 -88600770 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1049 1212 190 190 34 chr6 60916267 60916434 -88600603 + ORR1C2 LTR MaLR 183 383 -1 5 1049 276 100 0 0 chr6 60917852 60917892 -88599145 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1049 300 327 18 27 chr6 60917912 60918022 -88599015 - PB1D7 SINE Alu -1 119 11 5 1049 27 62 0 0 chr6 60918199 60918247 -88598790 + AT_rich Low_complexity Low_complexity 1 48 0 5 1049 23 54 0 0 chr6 60919035 60919072 -88597965 + AT_rich Low_complexity Low_complexity 1 37 0 5 1049 357 292 95 0 chr6 60919623 60919760 -88597277 - MER5A DNA MER1_type 0 189 40 5 1049 273 197 50 8 chr6 60921719 60921814 -88595223 + L1MA4 LINE L1 5848 5932 -368 5 1049 209 172 0 15 chr6 60921819 60921884 -88595153 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1049 354 171 52 13 chr6 60921905 60921982 -88595055 - HAL1-3A_ME LINE L1 -804 2054 1975 5 1049 330 26 0 0 chr6 60921982 60922021 -88595016 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1049 1191 93 60 11 chr6 60922583 60922767 -88594270 + B2_Mm2 SINE B2 1 193 -2 5 1049 492 99 0 0 chr6 60925035 60925106 -88591931 + (TC)n Simple_repeat Simple_repeat 1 71 0 5 1049 216 0 0 0 chr6 60928267 60928291 -88588746 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1049 218 313 45 79 chr6 60928522 60928636 -88588401 + MIRm SINE MIR 1 110 -166 5 1049 880 258 45 28 chr6 60929289 60929576 -88587461 + B4A SINE B4 1 292 0 5 1049 315 71 0 0 chr6 60929646 60929688 -88587349 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1049 549 0 0 0 chr6 60929688 60929749 -88587288 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 5 1049 21 57 0 0 chr6 60930082 60930117 -88586920 + AT_rich Low_complexity Low_complexity 1 35 0 5 1049 378 42 0 0 chr6 60930722 60930770 -88586267 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 5 1049 3307 85 0 25 chr6 60930882 60931355 -88585682 + L1Md_F2 LINE L1 6115 6575 -7 5 1049 225 0 0 0 chr6 60931566 60931591 -88585446 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1049 306 0 0 0 chr6 60931591 60931624 -88585413 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 1049 571 339 79 38 chr6 60931698 60931965 -88585072 + B4A SINE B4 7 284 -8 5 1049 1298 152 13 5 chr6 60933117 60933341 -88583696 - URR1A DNA MER1_type 0 226 1 5 1049 29 47 0 0 chr6 60933385 60933428 -88583609 + AT_rich Low_complexity Low_complexity 1 43 0 5 1049 194 306 107 56 chr6 60934081 60934278 -88582759 - L2c LINE L2 -31 3356 3150 5 1049 22 35 0 0 chr6 60935275 60935304 -88581733 + AT_rich Low_complexity Low_complexity 1 29 0 5 1049 225 0 0 0 chr6 60935545 60935570 -88581467 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1049 880 306 53 23 chr6 60935579 60935843 -88581194 + B4A SINE B4 8 279 -13 5 1049 290 238 107 0 chr6 60935932 60936016 -88581021 + L1MA4 LINE L1 5838 5930 -370 5 1049 584 315 24 42 chr6 60936461 60936673 -88580364 + B3A SINE B2 2 209 -7 5 1049 189 312 37 61 chr6 60936938 60937020 -88580017 - L3 LINE CR1 -1348 3141 3062 5 1049 302 291 43 81 chr6 60937380 60937541 -88579496 + RSINE1 SINE B4 11 165 0 5 1049 855 55 0 0 chr6 60939476 60939585 -88577452 + (TC)n Simple_repeat Simple_repeat 2 110 0 5 1049 538 322 105 30 chr6 60939617 60939883 -88577154 - B4A SINE B4 -4 288 3 5 1049 3983 139 6 25 chr6 60939985 60940613 -88576424 - RMER19A LTR ERVK -121 616 1 5 1049 21 0 0 0 chr6 60942130 60942151 -88574886 + AT_rich Low_complexity Low_complexity 1 21 0 5 1049 1588 171 143 9 chr6 60942268 60942452 -88574585 - RMER10B LTR ERVL 0 398 190 5 1049 423 0 0 0 chr6 60942452 60942499 -88574538 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1049 1588 171 143 9 chr6 60942499 60942663 -88574374 - RMER10B LTR ERVL -209 189 4 5 1049 532 249 138 15 chr6 60942719 60942915 -88574122 - RMER17C-int LTR ERVK -83 3155 2936 6 1049 560 210 68 108 chr6 60942939 60942987 -88574050 - RMER17C-int LTR ERVK -361 2877 2830 6 1049 225 0 0 0 chr6 60942987 60943012 -88574025 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 6 1049 366 23 0 0 chr6 60943013 60943056 -88573981 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 6 1049 560 210 68 108 chr6 60943056 60943283 -88573754 - RMER17C-int LTR ERVK -409 2829 2614 6 1049 767 201 58 93 chr6 60943436 60943661 -88573376 - RLTR19-int LTR ERVK -3130 3007 2791 6 1049 324 0 0 0 chr6 60943832 60943868 -88573169 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1049 855 67 0 0 chr6 60944122 60944241 -88572796 + (TC)n Simple_repeat Simple_repeat 1 119 0 6 1049 397 225 165 121 chr6 60944879 60945061 -88571976 + B3A SINE B2 2 191 -4 6 1049 244 339 27 0 chr6 60946069 60946181 -88570856 - PB1D10 SINE Alu -1 116 2 6 1049 427 370 86 47 chr6 60946215 60946407 -88570630 - MLT1A LTR MaLR 0 374 168 6 1049 519 224 55 23 chr6 60946407 60946535 -88570502 + B1F1 SINE Alu 1 132 -17 6 1049 427 370 86 47 chr6 60946535 60946680 -88570357 - MLT1A LTR MaLR -207 167 24 6 1049 261 0 0 0 chr6 60948362 60948391 -88568646 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 1049 450 94 0 0 chr6 60948391 60948454 -88568583 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 1050 2714 166 22 20 chr6 60948694 60949198 -88567839 - RLTR16 LTR ERVK 0 505 1 6 1050 407 19 19 0 chr6 60949251 60949303 -88567734 + (TAG)n Simple_repeat Simple_repeat 3 55 0 6 1050 1182 124 11 0 chr6 60949539 60949716 -88567321 + B2_Mm1t SINE B2 1 179 -14 6 1050 255 182 56 11 chr6 60949717 60949806 -88567231 + (CAGAG)n Simple_repeat Simple_repeat 3 95 0 6 1050 27 29 0 0 chr6 60949810 60949844 -88567193 + AT_rich Low_complexity Low_complexity 1 34 0 6 1050 309 117 350 10 chr6 60949844 60949947 -88567090 + B2_Mm2 SINE B2 58 195 0 6 1050 438 141 0 0 chr6 60949947 60950011 -88567026 + (GGGAA)n Simple_repeat Simple_repeat 4 67 0 6 1050 755 75 9 0 chr6 60950011 60950118 -88566919 + (GAAAA)n Simple_repeat Simple_repeat 4 111 0 6 1050 267 367 89 0 chr6 60950207 60950297 -88566740 - B1F1 SINE Alu -46 103 6 6 1050 279 0 0 0 chr6 60950929 60950960 -88566077 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1050 277 282 13 0 chr6 60951675 60951753 -88565284 + CT-rich Low_complexity Low_complexity 3 81 0 6 1050 686 183 33 0 chr6 60951809 60951929 -88565108 + ETnERV2-int LTR ERVK 7070 7193 -213 6 1050 184 200 44 0 chr6 60953369 60953414 -88563623 + L3 LINE CR1 959 1005 -3484 6 1050 288 0 0 0 chr6 60953783 60953815 -88563222 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1050 407 182 26 0 chr6 60953888 60953965 -88563072 + ID4_ SINE ID 3 81 -2 6 1050 240 352 44 0 chr6 60954337 60954428 -88562609 + PB1D10 SINE Alu 15 109 -8 6 1050 250 296 123 56 chr6 60954535 60954714 -88562323 + MIR SINE MIR 41 231 -31 6 1050 22 0 0 0 chr6 60954911 60954933 -88562104 + AT_rich Low_complexity Low_complexity 1 22 0 6 1050 369 0 0 0 chr6 60955368 60955409 -88561628 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1050 1133 58 0 0 chr6 60955409 60955548 -88561489 - B1_Mus1 SINE Alu -9 139 1 6 1050 464 261 13 1 chr6 60955967 60956081 -88560956 - B1_Mur2 SINE Alu -4 116 1 6 1050 301 236 29 114 chr6 60956446 60956459 -88560578 + MT2B LTR ERVL 152 155 -446 6 1050 604 261 0 61 chr6 60956459 60956606 -88560431 + B1_Mus2 SINE Alu 3 140 -7 6 1050 189 0 0 0 chr6 60956606 60956627 -88560410 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1050 351 310 17 26 chr6 60956724 60956840 -88560197 + PB1D10 SINE Alu 1 115 -2 6 1050 186 43 0 0 chr6 60958254 60958277 -88558760 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1050 671 307 20 54 chr6 60958370 60958666 -88558371 + B4A SINE B4 5 290 -2 6 1050 23 0 0 0 chr6 60958749 60958772 -88558265 + AT_rich Low_complexity Low_complexity 1 23 0 6 1050 243 0 0 0 chr6 60959208 60959235 -88557802 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1050 1032 131 67 17 chr6 60959245 60959424 -88557613 + B2_Mm2 SINE B2 1 188 -7 6 1050 273 295 0 76 chr6 60959521 60959615 -88557422 + L1_Rod LINE L1 2122 2213 -3634 6 1050 680 12 0 0 chr6 60959615 60959700 -88557337 + L1Md_A LINE L1 6498 6582 0 6 1050 273 295 0 76 chr6 60959700 60959737 -88557300 + L1_Rod LINE L1 2214 2243 -3604 6 1050 235 268 0 0 chr6 60959713 60959784 -88557253 + L1M4 LINE L1 2225 2295 -3851 6 1050 387 296 38 70 chr6 60959860 60960045 -88556992 + L1M2 LINE L1 2382 2560 -3583 6 1050 769 175 511 7 chr6 60960066 60960344 -88556693 + MTC LTR MaLR 2 421 0 6 1050 986 270 39 55 chr6 60960414 60960720 -88556317 + L1M2 LINE L1 4099 4398 -1745 6 1050 604 284 0 0 chr6 60960720 60960868 -88556169 + B1_Mur2 SINE Alu 1 148 -1 6 1050 986 270 39 55 chr6 60960868 60961051 -88555986 + L1M2 LINE L1 4399 4580 -1563 6 1050 770 48 10 0 chr6 60961080 60961183 -88555854 + (TTTC)n Simple_repeat Simple_repeat 4 107 0 6 1050 1180 70 27 5 chr6 60961402 60961590 -88555447 + MTA_Mm-int LTR MaLR 907 1098 0 6 1050 3178 58 5 0 chr6 60961590 60961984 -88555053 + MTA_Mm LTR MaLR 1 396 0 6 1050 719 253 18 14 chr6 60961984 60962172 -88554865 + Lx9 LINE L1 7268 7458 -186 6 1050 1350 224 31 25 chr6 60962172 60962529 -88554508 + RLTR10D LTR ERVK 1 359 0 6 1050 719 253 18 14 chr6 60962529 60962560 -88554477 + Lx9 LINE L1 7459 7488 -156 6 1050 282 56 0 0 chr6 60962564 60962600 -88554437 + (TAA)n Simple_repeat Simple_repeat 3 38 0 6 1050 407 332 100 61 chr6 60962940 60963380 -88553657 + MER34A LTR ERV1 4 460 -111 6 1050 279 0 0 0 chr6 60963400 60963431 -88553606 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1050 606 266 19 7 chr6 60963506 60963661 -88553376 + MLT1B LTR MaLR 231 387 -3 6 1050 1010 224 173 22 chr6 60964136 60964505 -88552532 - Lx8 LINE L1 0 7473 7049 6 1050 2513 92 0 89 chr6 60964539 60964933 -88552104 - RLTR10D LTR ERVK 0 359 1 6 1050 240 216 20 0 chr6 60964939 60964990 -88552047 - B3A SINE B2 -144 54 3 6 1050 784 33 0 16 chr6 60965173 60965296 -88551741 - L1Md_F3 LINE L1 0 6584 6464 6 1050 4905 136 34 12 chr6 60965295 60966154 -88550883 - Lx LINE L1 -30 6624 5747 6 1050 1956 104 0 0 chr6 60966151 60966431 -88550606 + Lx LINE L1 5503 5782 -101 6 1050 212 0 0 35 chr6 60967954 60967983 -88549054 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1050 523 241 0 133 chr6 60968348 60968506 -88548531 + B1_Mur2 SINE Alu 5 141 -8 6 1050 378 0 0 0 chr6 60968857 60968899 -88548138 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1050 970 60 90 0 chr6 60970221 60970354 -88546683 - B1_Mm SINE Alu -2 145 1 6 1050 365 232 14 14 chr6 60970580 60970724 -88546313 + CT-rich Low_complexity Low_complexity 2 145 0 6 1050 275 216 0 0 chr6 60971220 60971271 -88545766 + PB1D9 SINE Alu 54 104 -16 6 1050 24 0 0 0 chr6 60971281 60971305 -88545732 + AT_rich Low_complexity Low_complexity 1 24 0 6 1050 420 55 0 0 chr6 60971660 60971715 -88545322 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1050 351 0 0 0 chr6 60971715 60971754 -88545283 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1050 745 265 49 18 chr6 60972880 60973103 -88543934 + RMER5 LTR ERV1 1 230 -304 6 1050 39064 9 0 6 chr6 60973104 60979306 -88537731 - L1Md_A LINE L1 0 6582 422 6 1050 495 239 237 23 chr6 60979307 60979569 -88537468 + RMER5 LTR ERV1 217 534 0 6 1050 264 184 41 0 chr6 60979742 60979791 -88537246 + RMER5 LTR ERV1 484 534 0 6 1050 2363 75 21 15 chr6 60980361 60980686 -88536351 + IAPLTR2b LTR ERVK 1 327 0 6 1050 533 175 125 48 chr6 60980713 60980881 -88536156 - RMER5 LTR ERV1 -19 515 335 6 1050 2237 42 0 0 chr6 60980883 60981166 -88535871 - L1Md_F2 LINE L1 -417 6165 5883 6 1050 3364 35 0 0 chr6 60981166 60981560 -88535477 + L1Md_F2 LINE L1 6172 6565 -17 6 1050 25 0 0 0 chr6 60981560 60981585 -88535452 + AT_rich Low_complexity Low_complexity 1 25 0 6 1050 850 303 55 22 chr6 60981643 60981916 -88535121 - RMER5 LTR ERV1 -247 287 6 6 1050 421 335 137 20 chr6 60981965 60982169 -88534868 + MLT1A0 LTR MaLR 138 365 0 6 1050 722 185 8 0 chr6 60982355 60982485 -88534552 + B1_Mur4 SINE Alu 1 131 -19 6 1050 344 273 47 67 chr6 60982644 60982899 -88534138 - RMER17C LTR ERVK -160 250 1 6 1050 222 37 0 0 chr6 60983470 60983497 -88533540 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1050 186 71 0 0 chr6 60983834 60983862 -88533175 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1050 1192 281 30 30 chr6 60984175 60984608 -88532429 - L1MA6 LINE L1 -297 7176 6744 6 1050 691 294 108 65 chr6 60984622 60985019 -88532018 + RMER10A LTR ERVL 12 425 -17 6 1050 639 299 93 0 chr6 60985041 60985245 -88531792 - L1MA6 LINE L1 -764 6709 6487 6 1050 796 312 99 32 chr6 60985246 60985447 -88531590 - L1MA6 LINE L1 -1108 6365 6133 6 1050 243 0 0 0 chr6 60985447 60985474 -88531563 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1050 1064 87 0 7 chr6 60985474 60985613 -88531424 - B1_Mus1 SINE Alu -10 138 1 6 1050 1315 285 60 21 chr6 60985613 60986420 -88530617 - L1MA6 LINE L1 -1341 6132 5331 6 1050 1999 163 0 3 chr6 60986437 60986764 -88530273 - ORR1A3 LTR MaLR 0 326 1 6 1050 1708 275 61 57 chr6 60986767 60987749 -88529288 - L1MA6 LINE L1 -2910 2970 1985 6 1050 1237 207 73 82 chr6 60988350 60988718 -88528319 + ORR1C2 LTR MaLR 20 384 0 6 1050 351 0 0 0 chr6 60988773 60988812 -88528225 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1050 1673 202 128 3 chr6 60988919 60989262 -88527775 - ORR1B1 LTR MaLR -8 386 1 6 1050 486 136 0 0 chr6 60989483 60989564 -88527473 + (A)n Simple_repeat Simple_repeat 1 81 0 6 1050 549 55 0 0 chr6 60990152 60990225 -88526812 + B1_Mur4 SINE Alu 78 150 0 6 1050 1678 261 40 16 chr6 60990822 60991229 -88525808 - MTD LTR MaLR -14 405 2 6 1050 935 137 6 0 chr6 60991667 60991828 -88525209 + (TTCC)n Simple_repeat Simple_repeat 3 164 0 6 1050 590 179 0 53 chr6 60991828 60991934 -88525103 - PB1D9 SINE Alu -10 110 11 6 1050 183 42 0 0 chr6 60991934 60991958 -88525079 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1050 250 317 10 10 chr6 60992229 60992331 -88524706 + CT-rich Low_complexity Low_complexity 1 102 0 6 1050 306 323 92 8 chr6 60994502 60994633 -88522404 + ORR1E LTR MaLR 1 142 -217 6 1050 216 0 0 0 chr6 60995029 60995053 -88521984 + (CAA)n Simple_repeat Simple_repeat 1 24 0 6 1050 986 201 113 0 chr6 60995223 60995417 -88521620 - B3 SINE B2 0 216 1 7 1050 504 192 0 0 chr6 60995417 60995521 -88521516 + CT-rich Low_complexity Low_complexity 1 104 0 7 1050 879 166 42 21 chr6 60995521 60995712 -88521325 - B2_Mm2 SINE B2 0 195 1 7 1050 734 105 0 9 chr6 60996004 60996119 -88520918 + (TTTC)n Simple_repeat Simple_repeat 4 117 0 7 1050 1281 214 90 76 chr6 60996885 60997319 -88519718 + RMER10A LTR ERVL 1 440 -2 7 1050 1416 199 98 66 chr6 60997450 60997727 -88519310 + RMER10B LTR ERVL 19 312 -86 7 1050 2396 131 12 36 chr6 60997727 60998146 -88518891 + RLTR9E LTR ERVK 1 409 0 7 1050 1416 199 98 66 chr6 60998146 60998234 -88518803 + RMER10B LTR ERVL 313 396 -2 7 1050 355 118 0 0 chr6 60998361 60998412 -88518625 + RLTR23 LTR ERV1 11 61 -369 7 1050 3397 29 0 0 chr6 60998412 60998826 -88518211 - L1_Mus1 LINE L1 -566 6001 5588 7 1050 4490 61 7 0 chr6 60998843 60999399 -88517638 + L1_Mus1 LINE L1 6008 6567 0 7 1050 406 70 35 0 chr6 60999428 60999485 -88517552 + RLTR23 LTR ERV1 46 104 -326 7 1050 214 150 0 48 chr6 60999499 60999541 -88517496 + A-rich Low_complexity Low_complexity 2 41 0 7 1050 1436 193 88 24 chr6 60999541 60999870 -88517167 + RLTR23 LTR ERV1 73 422 -8 7 1050 453 307 265 18 chr6 61000217 61000606 -88516431 + L1MC1 LINE L1 4470 4954 -1192 1 1050 245 217 14 0 chr6 61001159 61001228 -88515809 + L1MC1 LINE L1 4982 5051 -1095 1 1050 399 290 170 21 chr6 61001407 61001714 -88515323 + L1MC1 LINE L1 5256 5612 -732 1 1050 889 305 61 47 chr6 61001719 61002126 -88514911 + MTE2a LTR MaLR 1 419 0 2 1050 1834 176 142 41 chr6 61002148 61002820 -88514217 - Lx5 LINE L1 -505 6545 5806 3 1050 2300 181 56 5 chr6 61002841 61003290 -88513747 + Lx5 LINE L1 6576 7047 -3 4 1050 527 300 23 46 chr6 61003366 61003628 -88513409 + L1MC1 LINE L1 6060 6315 -18 1 1050 296 241 0 33 chr6 61003726 61003786 -88513251 - RSINE1 SINE B4 -106 59 2 5 1050 212 323 32 0 chr6 61004102 61004164 -88512873 - ID4_ SINE ID -6 77 14 6 1050 1961 171 0 58 chr6 61004614 61005049 -88511988 + RMER17C LTR ERVK 1 410 0 7 1050 563 211 137 79 chr6 61005355 61005425 -88511612 - RLTR25A LTR ERVK 0 1103 1023 8 1050 3752 130 98 151 chr6 61005425 61006406 -88510631 - RLTR13B3 LTR ERVK 0 929 1 9 1050 2501 161 152 12 chr6 61006406 61007198 -88509839 - RLTR25A LTR ERVK -81 1022 1 8 1050 598 255 57 47 chr6 61008316 61008509 -88508528 + MTEb LTR MaLR 5 199 -180 1 1050 372 22 0 0 chr6 61008510 61008555 -88508482 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1050 227 115 39 0 chr6 61008962 61009014 -88508023 + (TTTG)n Simple_repeat Simple_repeat 1 54 0 1 1050 27 0 0 0 chr6 61009074 61009101 -88507936 + AT_rich Low_complexity Low_complexity 1 27 0 1 1050 288 290 100 0 chr6 61011032 61011132 -88505905 - Tigger5 DNA MER2_type -2283 123 14 1 1050 905 293 148 12 chr6 61011889 61012402 -88504635 + Lx8 LINE L1 6267 6849 -624 1 1050 484 337 80 3 chr6 61012414 61012700 -88504337 + Lx8 LINE L1 6952 7259 -214 1 1050 21 0 0 0 chr6 61012808 61012829 -88504208 + AT_rich Low_complexity Low_complexity 1 21 0 1 1050 201 171 0 0 chr6 61013637 61013672 -88503365 + T-rich Low_complexity Low_complexity 1 35 0 1 1050 1074 66 0 0 chr6 61013672 61013809 -88503228 - B1_Mus1 SINE Alu 0 148 12 1 1050 1536 239 50 8 chr6 61014098 61014498 -88502539 - MTD LTR MaLR 0 419 3 1 1050 391 246 112 7 chr6 61014579 61014722 -88502315 + RSINE1 SINE B4 8 165 0 2 1050 297 0 0 0 chr6 61015388 61015421 -88501616 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1050 384 119 0 0 chr6 61017701 61017760 -88499277 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 2 1050 23 68 0 0 chr6 61018073 61018117 -88498920 + AT_rich Low_complexity Low_complexity 1 44 0 2 1050 1942 204 11 3 chr6 61018147 61018526 -88498511 + RLTR14 LTR ERV1 1 382 0 2 1050 1057 216 9 0 chr6 61018577 61018799 -88498238 + URR1B DNA MER1_type 2 225 0 2 1050 408 67 0 0 chr6 61018897 61018957 -88498080 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1050 750 130 129 8 chr6 61019273 61019397 -88497640 + B1_Mus2 SINE Alu 9 147 0 2 1050 454 261 24 71 chr6 61019420 61019589 -88497448 + B3A SINE B2 31 191 -7 2 1050 431 303 115 22 chr6 61019632 61019874 -88497163 + MLT1A1 LTR MaLR 124 396 -12 2 1050 7097 59 5 0 chr6 61020073 61020969 -88496068 + L1Md_F2 LINE L1 5671 6570 -12 3 1050 198 293 182 29 chr6 61021217 61021354 -88495683 + L3 LINE CR1 919 1076 -3413 3 1050 507 196 0 0 chr6 61021374 61021517 -88495520 + (CA)n Simple_repeat Simple_repeat 2 144 0 3 1050 315 105 0 0 chr6 61021562 61021619 -88495418 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 3 1050 259 243 17 104 chr6 61021983 61022000 -88495037 + MT2B LTR ERVL 153 159 -442 3 1050 664 231 28 7 chr6 61022000 61022144 -88494893 + B1_Mur3 SINE Alu 3 149 0 3 1050 298 365 160 19 chr6 61022188 61022456 -88494581 + MLT1A0 LTR MaLR 28 333 -32 3 1050 258 32 0 0 chr6 61022688 61022719 -88494318 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 1050 1787 285 129 35 chr6 61022722 61023549 -88493488 - Lx8 LINE L1 -44 7429 6526 3 1050 307 180 0 0 chr6 61023634 61023684 -88493353 - MER58B DNA MER1_type -129 212 163 3 1050 986 289 94 15 chr6 61023772 61024102 -88492935 - MER21B LTR ERV1 -2 861 506 4 1050 663 318 66 19 chr6 61024234 61024491 -88492546 - MER21B LTR ERV1 -557 306 38 4 1050 234 177 31 31 chr6 61024559 61024623 -88492414 + MTB LTR MaLR 66 129 -271 4 1050 564 222 8 0 chr6 61024706 61024823 -88492214 - PB1D9 SINE Alu -1 119 2 4 1050 247 363 44 7 chr6 61026632 61026768 -88490269 - MIRb SINE MIR -37 231 91 4 1050 4133 165 119 14 chr6 61027280 61028085 -88488952 - RMER19B LTR ERVK -12 890 1 4 1050 367 319 37 7 chr6 61028270 61028406 -88488631 - B1F1 SINE Alu -7 142 3 4 1050 181 308 15 0 chr6 61033503 61033568 -88483469 - MIRc SINE MIR -6 262 197 4 1050 468 282 66 49 chr6 61034486 61034669 -88482368 + MER2 DNA MER2_type 160 345 0 4 1050 4941 141 94 81 chr6 61035365 61036378 -88480659 + RLTR25B LTR ERVK 3 1028 0 4 1050 21 36 0 0 chr6 61037092 61037120 -88479917 + AT_rich Low_complexity Low_complexity 1 28 0 4 1050 422 212 0 0 chr6 61037396 61037476 -88479561 - RMER1B Other Other -553 513 434 5 1050 22 70 0 0 chr6 61037509 61037552 -88479485 + AT_rich Low_complexity Low_complexity 1 43 0 5 1050 3076 175 41 19 chr6 61037565 61038043 -88478994 + RLTR20A2 LTR ERVK 1 490 -88 5 1050 279 54 0 0 chr6 61038043 61038080 -88478957 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1050 3076 175 41 19 chr6 61038080 61038166 -88478871 + RLTR20A2 LTR ERVK 491 577 -1 5 1050 33762 44 1 3 chr6 61038393 61043646 -88473391 + L1Md_T LINE L1 255 5589 -297 5 1050 8359 35 0 3 chr6 61043646 61044645 -88472392 + L1Md_T LINE L1 5590 6585 0 5 1050 230 282 28 14 chr6 61044705 61044777 -88472260 + MER5A DNA MER1_type 4 76 -113 5 1050 21 0 0 0 chr6 61044875 61044896 -88472141 + AT_rich Low_complexity Low_complexity 1 21 0 5 1050 273 139 163 28 chr6 61045233 61045305 -88471732 - RMER6D LTR ERVK -611 145 25 5 1050 2031 267 18 12 chr6 61045708 61046205 -88470832 + Lx6 LINE L1 6906 7405 -55 5 1050 1375 244 31 12 chr6 61046418 61046738 -88470299 - Lx5 LINE L1 -3 7047 6722 5 1050 660 13 0 0 chr6 61046748 61046825 -88470212 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 1050 405 70 0 0 chr6 61046825 61046881 -88470156 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1050 2676 222 14 11 chr6 61046881 61047450 -88469587 + Lx5 LINE L1 6145 6715 -335 6 1050 25 31 0 0 chr6 61047632 61047664 -88469373 + AT_rich Low_complexity Low_complexity 1 32 0 6 1050 1869 106 45 126 chr6 61049043 61049222 -88467815 - ORR1A2 LTR MaLR 0 327 157 6 1050 1233 48 0 0 chr6 61049222 61049369 -88467668 - B1_Mm SINE Alu 0 147 1 6 1050 1869 106 45 126 chr6 61049369 61049545 -88467492 - ORR1A2 LTR MaLR -171 156 1 6 1050 279 0 0 0 chr6 61051409 61051440 -88465597 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1050 591 85 0 0 chr6 61051534 61051616 -88465421 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 1050 527 290 16 49 chr6 61051616 61051824 -88465213 + MLT1A LTR MaLR 173 467 0 6 1050 288 323 0 0 chr6 61052893 61052955 -88464082 - B3A SINE B2 -64 134 73 6 1050 643 191 35 49 chr6 61053078 61053221 -88463816 - B1_Mus1 SINE Alu 0 148 8 7 1050 224 278 13 89 chr6 61053153 61053232 -88463805 - B4A SINE B4 -140 152 80 7 1050 302 180 16 0 chr6 61054169 61054230 -88462807 + L1MA5 LINE L1 5874 5935 -365 7 1050 309 267 147 0 chr6 61054873 61054948 -88462089 + PB1D10 SINE Alu 24 109 -8 7 1050 25 31 0 0 chr6 61055192 61055224 -88461813 + AT_rich Low_complexity Low_complexity 1 32 0 7 1050 329 307 66 45 chr6 61055405 61055603 -88461434 + ORR1E LTR MaLR 14 215 -144 7 1050 1393 188 44 121 chr6 61055664 61056003 -88461034 + ORR1A4 LTR MaLR 17 329 0 7 1050 234 91 0 0 chr6 61056836 61056869 -88460168 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1050 288 333 9 0 chr6 61056984 61057089 -88459948 + PB1D10 SINE Alu 1 106 -11 7 1050 1387 194 21 14 chr6 61057382 61057669 -88459368 - RMER5 LTR ERV1 -17 517 229 7 1050 1142 75 0 7 chr6 61058229 61058376 -88458661 + B1_Mus1 SINE Alu 3 148 0 8 1050 1991 212 61 5 chr6 61059487 61059920 -88457117 + RMER12B LTR ERVK 1 458 -946 8 1050 2589 83 49 32 chr6 61059920 61060329 -88456708 + BGLII LTR ERVK 1 416 -5 8 1050 3926 191 77 39 chr6 61060296 61060884 -88456153 + RMER12B LTR ERVK 422 1018 -386 8 1050 4005 148 19 17 chr6 61060884 61061573 -88455464 + RLTR17 LTR ERVK 3 692 0 8 1050 3926 191 77 39 chr6 61061573 61061930 -88455107 + RMER12B LTR ERVK 1019 1403 -1 8 1050 929 330 25 21 chr6 61064532 61064814 -88452223 - B4A SINE B4 0 292 10 8 1050 714 171 0 0 chr6 61064895 61064949 -88452088 + polypurine Low_complexity Low_complexity 2 55 0 8 1050 974 148 6 0 chr6 61064949 61065125 -88451912 + GA-rich Low_complexity Low_complexity 4 180 0 8 1050 714 171 0 0 chr6 61065125 61065210 -88451827 + polypurine Low_complexity Low_complexity 56 140 0 8 1050 3016 148 118 5 chr6 61065894 61066529 -88450508 - Lx4A LINE L1 0 7058 6352 8 1050 727 279 82 80 chr6 61066541 61066942 -88450095 + RLTR26 LTR ERVK 1 430 -212 8 1050 531 319 0 66 chr6 61068214 61068365 -88448672 + RSINE1 SINE B4 14 154 -11 9 1050 468 0 0 0 chr6 61068367 61068419 -88448618 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1050 222 91 0 0 chr6 61068433 61068466 -88448571 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 9 1050 2082 197 48 5 chr6 61068838 61069236 -88447801 - MTD LTR MaLR -1 418 4 9 1050 675 200 50 7 chr6 61070806 61070947 -88446090 + B1_Mur3 SINE Alu 1 147 -2 9 1050 315 268 8 158 chr6 61071033 61071166 -88445871 - RMER5 LTR ERV1 -414 120 8 9 1050 565 279 128 0 chr6 61071251 61071430 -88445607 - B3 SINE B2 -14 202 1 9 1050 231 36 0 0 chr6 61071459 61071487 -88445550 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1050 770 67 0 0 chr6 61071487 61071583 -88445454 - B1_Mm SINE Alu -9 138 43 9 1050 380 119 0 33 chr6 61071677 61071738 -88445299 - B1_Mus2 SINE Alu -88 59 1 9 1050 387 361 70 22 chr6 61071760 61072032 -88445005 - MLT1E1A LTR MaLR -46 634 350 1 1050 1501 200 99 48 chr6 61072095 61072447 -88444590 - ORR1C1 LTR MaLR -8 370 1 1 1050 293 299 149 0 chr6 61072447 61072554 -88444483 - MLT1E1A LTR MaLR -409 244 105 1 1050 1071 275 142 7 chr6 61073566 61073995 -88443042 + Lx8 LINE L1 6839 7325 -148 1 1050 243 0 0 0 chr6 61074107 61074134 -88442903 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1050 349 314 175 21 chr6 61075977 61076120 -88440917 + RSINE1 SINE B4 1 165 0 1 1050 916 297 214 8 chr6 61076354 61076936 -88440101 - Lx8 LINE L1 -201 7272 6571 1 1050 799 259 172 79 chr6 61076946 61077324 -88439713 - MTD LTR MaLR -5 414 2 1 1050 996 246 124 27 chr6 61077327 61077657 -88439380 - Lx8 LINE L1 -910 6563 6202 1 1050 203 61 0 29 chr6 61077802 61077836 -88439201 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1 1050 21 36 0 0 chr6 61079183 61079211 -88437826 + AT_rich Low_complexity Low_complexity 1 28 0 1 1050 612 187 0 0 chr6 61079232 61079339 -88437698 + L1VL4 LINE L1 194 300 -6002 1 131 14344 88 25 58 chr6 61079339 61082466 -88434571 + L1VL4 LINE L1 232 3249 -310 1 1051 5544 127 63 19 chr6 61082453 61083566 -88433471 + Lx2 LINE L1 5764 6646 -351 1 1051 297 0 0 0 chr6 61084051 61084084 -88432953 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1051 6390 129 30 7 chr6 61084684 61086175 -88430862 + Lx LINE L1 5130 6654 0 1 1051 915 213 40 48 chr6 61087016 61087243 -88429794 + URR1B DNA MER1_type 1 225 0 1 1051 250 277 15 0 chr6 61087493 61087558 -88429479 + GA-rich Low_complexity Low_complexity 1 66 0 1 1051 603 322 19 5 chr6 61087710 61087925 -88429112 - ID_B1 SINE B4 -3 221 4 1 1051 22 0 0 0 chr6 61088110 61088132 -88428905 + AT_rich Low_complexity Low_complexity 1 22 0 1 1051 189 0 0 0 chr6 61088558 61088579 -88428458 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1051 787 300 87 10 chr6 61088731 61089077 -88427960 - L1MB3 LINE L1 -9 6171 5784 1 1051 399 41 0 0 chr6 61089077 61089126 -88427911 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1051 787 296 74 9 chr6 61089126 61089419 -88427618 - L1MB3 LINE L1 -399 5784 5478 1 1051 242 0 61 0 chr6 61089579 61089612 -88427425 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1051 1214 218 158 43 chr6 61089669 61090106 -88426931 + Lx2B LINE L1 6510 6996 -4 1 1051 640 124 0 26 chr6 61090980 61091096 -88425941 - Lx LINE L1 -1 6653 6541 1 1051 5215 82 12 0 chr6 61091094 61091829 -88425208 - Lx LINE L1 -240 6414 5671 1 1051 26 0 0 0 chr6 61092368 61092394 -88424643 + AT_rich Low_complexity Low_complexity 1 26 0 1 1051 2796 66 147 117 chr6 61093914 61094411 -88422626 + RLTR1B LTR ERV1 1 512 0 1 1051 714 309 49 34 chr6 61094463 61094728 -88422309 - B4A SINE B4 -22 270 2 1 1051 2465 149 183 127 chr6 61094826 61095121 -88421916 - RLTR13C2 LTR ERVK -23 785 478 1 1051 2809 57 3 26 chr6 61095121 61095499 -88421538 + L1_Mus1 LINE L1 6198 6566 -1 1 1051 2465 149 183 127 chr6 61095499 61095946 -88421091 - RLTR13C2 LTR ERVK -331 477 1 1 1051 768 317 142 32 chr6 61095950 61096298 -88420739 - MLT2B1 LTR ERVL -41 479 73 1 1051 357 24 0 0 chr6 61096298 61096340 -88420697 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1051 415 316 152 38 chr6 61096340 61096400 -88420637 - MLT2B1 LTR ERVL -482 72 10 1 1051 871 214 5 60 chr6 61096765 61096935 -88420102 + ORR1D1 LTR MaLR 5 165 -209 1 1051 369 0 0 0 chr6 61096935 61096976 -88420061 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1051 871 214 5 60 chr6 61096976 61097004 -88420033 + ORR1D1 LTR MaLR 166 192 -182 1 1051 192 333 0 0 chr6 61097541 61097610 -88419427 + MIR SINE MIR 185 253 -9 1 1051 230 292 157 0 chr6 61097689 61097778 -88419259 - MLT1A0 LTR MaLR 0 374 272 1 1051 352 303 130 38 chr6 61097791 61097976 -88419061 - MLT1A0 LTR MaLR -162 203 2 1 1051 330 318 36 0 chr6 61098169 61098279 -88418758 - RMER15 LTR ERVL -57 518 405 1 1051 8853 75 19 2 chr6 61098309 61100348 -88416689 + L1_Mus1 LINE L1 4497 6566 -1 1 1051 306 348 74 25 chr6 61100810 61100972 -88416065 - MER20 DNA MER1_type -15 204 35 1 1051 2955 227 61 21 chr6 61101107 61101880 -88415157 - RCHARR1 DNA MER1_type -113 861 58 1 1051 1114 94 10 113 chr6 61103737 61103940 -88413097 - B2_Mm1t SINE B2 -9 184 3 1 1051 441 0 0 0 chr6 61103992 61104041 -88412996 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1 1051 201 108 0 0 chr6 61105778 61105815 -88411222 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1051 29 0 0 0 chr6 61106122 61106151 -88410886 + AT_rich Low_complexity Low_complexity 1 29 0 1 1051 229 364 25 49 chr6 61107373 61107535 -88409502 - MIRb SINE MIR -39 229 72 1 1051 218 309 156 21 chr6 61107587 61107683 -88409354 - PB1D10 SINE Alu -7 110 2 1 1051 629 254 151 8 chr6 61107936 61108132 -88408905 - B3 SINE B2 -6 210 6 1 1051 765 276 95 65 chr6 61108415 61108880 -88408157 + L1MA6 LINE L1 5587 6065 -235 1 1051 37 23 0 0 chr6 61108965 61109009 -88408028 + AT_rich Low_complexity Low_complexity 1 44 0 1 1051 534 210 75 13 chr6 61109014 61109173 -88407864 + Lx7 LINE L1 5687 5855 -1841 1 1051 969 255 36 25 chr6 61109207 61109481 -88407556 + Lx7 LINE L1 6610 6886 -810 1 1051 1306 269 51 27 chr6 61109477 61109886 -88407151 + Lx7 LINE L1 6989 7407 -289 1 1051 360 0 0 0 chr6 61109890 61109930 -88407107 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1051 666 93 0 0 chr6 61109930 61110037 -88407000 + (GA)n Simple_repeat Simple_repeat 1 108 0 1 1051 225 215 30 30 chr6 61110056 61110123 -88406914 + Lx7 LINE L1 7613 7679 -17 1 1051 562 327 39 17 chr6 61110136 61110500 -88406537 - Lx9 LINE L1 -20 7624 7131 1 1051 249 33 0 0 chr6 61111401 61111431 -88405606 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1051 656 297 113 28 chr6 61111533 61111852 -88405185 - ORR1E LTR MaLR -12 347 2 1 1051 226 300 112 0 chr6 61111852 61111922 -88405115 - MTE-int LTR MaLR -52 1528 1450 1 1051 1522 310 58 36 chr6 61112004 61112560 -88404477 - MTE-int LTR MaLR -436 1144 577 1 1051 1255 274 55 30 chr6 61112984 61113387 -88403650 - MTE-int LTR MaLR -1080 500 88 1 1051 630 240 14 6 chr6 61114035 61114185 -88402852 + B1_Mur1 SINE Alu 5 149 0 1 1051 27 0 0 0 chr6 61114323 61114350 -88402687 + AT_rich Low_complexity Low_complexity 1 27 0 1 1051 383 291 104 31 chr6 61114412 61114731 -88402306 + ERVL-int LTR ERVL 677 1006 -4751 1 1051 1387 306 55 22 chr6 61115086 61115688 -88401349 + ERVL-int LTR ERVL 1293 1914 -3800 1 1051 2531 315 85 18 chr6 61115760 61116296 -88400741 + ERVL-int LTR ERVL 2076 2645 -3112 1 1051 1104 235 206 14 chr6 61116296 61116646 -88400391 - MTD LTR MaLR 0 419 3 1 1051 2531 315 85 18 chr6 61116646 61117446 -88399591 + ERVL-int LTR ERVL 2646 3502 -2255 1 1051 239 269 10 88 chr6 61117446 61117548 -88399489 - RMER12 LTR ERVK -497 825 732 1 1051 627 330 34 19 chr6 61117560 61117610 -88399427 + ERVL-int LTR ERVL 3562 3614 -2143 1 1051 2211 37 4 4 chr6 61117610 61117884 -88399153 - L1Md_F3 LINE L1 -14 6570 6297 1 1051 627 330 34 19 chr6 61117884 61118154 -88398883 + ERVL-int LTR ERVL 3615 3887 -1870 1 1051 463 256 15 8 chr6 61118205 61118335 -88398702 + ERVL-int LTR ERVL 4489 4619 -1138 1 1051 620 302 82 14 chr6 61118361 61118727 -88398310 + ERVL-int LTR ERVL 4685 5075 -682 1 1051 180 209 70 0 chr6 61119956 61119999 -88397038 - L2c LINE L2 -5 3382 3337 1 1051 384 22 0 0 chr6 61120317 61120362 -88396675 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 1 1051 420 337 176 26 chr6 61120472 61120806 -88396231 - L2 LINE L2 -567 2852 2471 1 1051 712 241 115 5 chr6 61120806 61120998 -88396039 - B3 SINE B2 -3 213 1 1 1051 420 337 176 26 chr6 61120998 61121169 -88395868 - L2 LINE L2 -949 2470 2272 1 1051 2567 104 0 5 chr6 61121358 61121755 -88395282 + L1_Mus4 LINE L1 6220 6614 -22 1 1051 270 77 0 0 chr6 61121755 61121763 -88395274 + (GAA)n Simple_repeat Simple_repeat 1 8 0 1 1051 1413 51 0 0 chr6 61121763 61121941 -88395096 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1 1051 270 77 0 0 chr6 61121941 61121971 -88395066 + (GAA)n Simple_repeat Simple_repeat 3 32 0 1 1051 21 0 0 0 chr6 61122284 61122305 -88394732 + AT_rich Low_complexity Low_complexity 1 21 0 1 1051 1464 127 52 18 chr6 61122312 61122584 -88394453 - Lx3C LINE L1 -2 6974 6694 1 1051 638 321 85 46 chr6 61122854 61122890 -88394147 - Lx8 LINE L1 -1 7472 7444 1 1051 230 56 28 0 chr6 61122890 61122926 -88394111 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1 1051 670 180 35 35 chr6 61122927 61123071 -88393966 - B1F2 SINE Alu -5 144 1 1 1051 638 321 85 46 chr6 61123071 61123596 -88393441 - Lx8 LINE L1 -30 7443 6887 1 1051 612 40 0 0 chr6 61123603 61123678 -88393359 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1051 274 330 142 0 chr6 61124166 61124272 -88392765 + MLT1E LTR MaLR 8 128 -525 1 1051 226 350 154 47 chr6 61124439 61124673 -88392364 + MLT1E LTR MaLR 362 620 -4 1 1051 21 0 0 0 chr6 61125076 61125097 -88391940 + AT_rich Low_complexity Low_complexity 1 21 0 1 1051 575 303 22 33 chr6 61125112 61125296 -88391741 - B3A SINE B2 -16 182 1 1 1051 1148 82 0 0 chr6 61125788 61125935 -88391102 - B1_Mus1 SINE Alu 0 148 2 1 1051 206 283 0 0 chr6 61126752 61126798 -88390239 + CT-rich Low_complexity Low_complexity 2 47 0 1 1051 952 274 20 27 chr6 61127125 61127418 -88389619 - B4A SINE B4 0 292 2 1 1051 226 182 36 0 chr6 61128783 61128838 -88388199 + B4A SINE B4 1 57 -235 1 1051 29 0 0 0 chr6 61129194 61129223 -88387814 + AT_rich Low_complexity Low_complexity 1 29 0 1 1051 209 263 35 17 chr6 61130277 61130451 -88386586 + (CCG)n Simple_repeat Simple_repeat 2 178 0 1 1051 330 45 0 0 chr6 61131970 61132014 -88385023 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1051 312 28 0 0 chr6 61132014 61132050 -88384987 + HAL1-3A_ME LINE L1 1980 2015 -843 1 1051 221 211 19 0 chr6 61132207 61132259 -88384778 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1051 201 39 0 0 chr6 61133563 61133589 -88383448 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1051 237 287 44 52 chr6 61134224 61134360 -88382677 + RLTR1C LTR ERV1 86 220 -283 1 1051 609 258 91 12 chr6 61134949 61135114 -88381923 + B3A SINE B2 3 180 -18 1 1051 276 30 0 0 chr6 61136610 61136643 -88380394 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1 1051 693 299 28 0 chr6 61138210 61138387 -88378650 + B3 SINE B2 5 186 -30 1 1051 525 16 0 0 chr6 61138387 61138449 -88378588 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1051 707 299 60 126 chr6 61138760 61139062 -88377975 - B4 SINE B4 0 292 11 1 1051 616 299 37 37 chr6 61139991 61140206 -88376831 + B4A SINE B4 2 216 -76 1 1051 2928 83 5 0 chr6 61140211 61140609 -88376428 - MTB LTR MaLR 0 400 1 1 1051 180 0 0 0 chr6 61140609 61140629 -88376408 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 1 1051 353 227 56 48 chr6 61140629 61140754 -88376283 + B4A SINE B4 162 287 -5 1 1051 195 276 0 0 chr6 61140772 61140859 -88376178 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1051 324 273 0 0 chr6 61140876 61141052 -88375985 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1051 668 278 12 11 chr6 61142646 61142832 -88374205 - MLT2C2 LTR ERVL -121 276 97 1 1051 6508 48 0 9 chr6 61143345 61144158 -88372879 + L1Md_F2 LINE L1 5777 6582 0 1 1051 1287 231 17 24 chr6 61144870 61145159 -88371878 + ORR1D1 LTR MaLR 3 289 -85 2 1051 2229 209 11 13 chr6 61145463 61145915 -88371122 - Lx5 LINE L1 -8 7042 6592 2 1051 369 0 0 0 chr6 61146193 61146234 -88370803 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1051 447 324 41 0 chr6 61146249 61146394 -88370643 - RSINE1 SINE B4 -14 151 1 2 1051 2959 37 3 0 chr6 61146745 61147098 -88369939 + L1Md_F2 LINE L1 6229 6582 0 2 1051 492 154 0 0 chr6 61147378 61147482 -88369555 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 2 1051 479 261 59 0 chr6 61147487 61147606 -88369431 - B3A SINE B2 -34 164 39 2 1051 33 0 0 0 chr6 61147872 61147905 -88369132 + AT_rich Low_complexity Low_complexity 1 33 0 2 1051 511 289 6 77 chr6 61148074 61148243 -88368794 - RSINE1 SINE B4 0 165 9 2 1051 29 0 0 0 chr6 61148494 61148523 -88368514 + AT_rich Low_complexity Low_complexity 1 29 0 2 1051 395 149 0 13 chr6 61149043 61149118 -88367919 + CT-rich Low_complexity Low_complexity 2 75 0 2 1051 1163 41 0 52 chr6 61149118 61149272 -88367765 - B1_Mus1 SINE Alu -2 146 1 2 1051 249 321 43 42 chr6 61149470 61149653 -88367384 - MIR SINE MIR -67 209 30 2 1051 421 274 24 71 chr6 61150078 61150247 -88366790 - RSINE1 SINE B4 -1 164 4 2 1051 327 262 12 12 chr6 61150964 61151049 -88365988 + BC1_Mm scRNA scRNA 3 87 -65 2 1051 398 20 0 19 chr6 61151755 61151807 -88365230 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1051 231 242 119 15 chr6 61153587 61153654 -88363383 - MER67C LTR ERV1 -465 246 173 2 1051 21 36 0 0 chr6 61155399 61155427 -88361610 + AT_rich Low_complexity Low_complexity 1 28 0 2 1051 402 306 110 23 chr6 61156005 61156332 -88360705 - MLT1A1 LTR MaLR 0 408 1 2 1051 252 329 27 0 chr6 61156442 61156515 -88360522 - B1F SINE Alu -9 140 66 2 1051 903 65 0 0 chr6 61156548 61156671 -88360366 + (CA)n Simple_repeat Simple_repeat 1 123 0 2 1051 1063 264 111 46 chr6 61156927 61157514 -88359523 + Lx9 LINE L1 7010 7634 -10 2 1051 21 0 0 0 chr6 61158636 61158657 -88358380 + AT_rich Low_complexity Low_complexity 1 21 0 2 1051 2348 166 8 3 chr6 61158973 61159353 -88357684 - ORR1B1 LTR MaLR -8 386 5 2 1051 26 30 0 0 chr6 61159441 61159474 -88357563 + AT_rich Low_complexity Low_complexity 1 33 0 2 1051 292 45 91 0 chr6 61160892 61160958 -88356079 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 2 1051 1020 89 7 33 chr6 61160958 61161109 -88355928 - B1_Mus1 SINE Alu 0 148 2 2 1051 188 35 35 0 chr6 61161474 61161503 -88355534 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1051 23 68 0 0 chr6 61161790 61161834 -88355203 + AT_rich Low_complexity Low_complexity 1 44 0 2 1051 647 208 102 23 chr6 61161835 61162012 -88355025 - ORR1D2 LTR MaLR 0 370 180 2 1051 405 39 0 0 chr6 61162028 61162079 -88354958 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1051 5131 122 2 14 chr6 61162404 61163263 -88353774 - L1_Mur2 LINE L1 -700 5177 4329 2 1051 1761 156 29 3 chr6 61163255 61163570 -88353467 + L1_Mur2 LINE L1 5275 5597 -280 2 1051 3893 215 84 20 chr6 61163579 61164642 -88352395 + Lx2B LINE L1 5860 6990 -10 2 1051 26 0 0 0 chr6 61167493 61167519 -88349518 + AT_rich Low_complexity Low_complexity 1 26 0 2 1051 354 61 0 0 chr6 61167590 61167639 -88349398 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1051 894 182 62 75 chr6 61167876 61168102 -88348935 + URR1B DNA MER1_type 1 223 -2 2 1051 448 293 16 16 chr6 61168452 61168473 -88348564 + L1_Mur3 LINE L1 3234 3254 -2593 2 1051 8906 7 3 0 chr6 61168473 61169466 -88347571 + L1Md_T LINE L1 5587 6582 0 2 1051 566 190 31 37 chr6 61169466 61169628 -88347409 + L1_Mur3 LINE L1 3245 3415 -2432 2 1051 195 282 103 0 chr6 61170402 61170480 -88346557 + MIR SINE MIR 96 181 -81 2 1051 643 270 68 48 chr6 61170496 61170788 -88346249 + BGLII_B LTR ERVK 73 370 -71 2 1051 252 0 0 0 chr6 61171512 61171540 -88345497 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 2 1051 768 198 80 76 chr6 61172660 61172884 -88344153 + URR1A DNA MER1_type 1 225 -1 2 1051 539 296 195 111 chr6 61173379 61173713 -88343324 - MTE2a LTR MaLR -5 374 13 2 1051 198 191 0 0 chr6 61173977 61174024 -88343013 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1051 4553 8 0 0 chr6 61174866 61175405 -88341632 + L1Md_T LINE L1 6081 6582 0 2 1051 1605 239 38 20 chr6 61176228 61176621 -88340416 - MTD LTR MaLR -2 417 18 2 1051 715 225 109 5 chr6 61176797 61176989 -88340048 - B3 SINE B2 -4 212 1 2 1051 767 235 142 22 chr6 61177975 61178158 -88338879 - B3 SINE B2 -6 210 6 2 1051 250 263 69 59 chr6 61178155 61178256 -88338781 + Kanga1c DNA Tc2 615 716 -13 2 1051 927 289 64 60 chr6 61178286 61179034 -88338003 + Lx8 LINE L1 5104 5905 -1568 2 1051 3287 83 4 38 chr6 61179253 61179704 -88337333 + Lx3A LINE L1 6521 6966 -15 2 1051 288 0 0 0 chr6 61179704 61179736 -88337301 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2 1051 3287 83 4 38 chr6 61179736 61179761 -88337276 + Lx3A LINE L1 6967 6981 0 2 1051 264 130 0 0 chr6 61179919 61179965 -88337072 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1051 1238 80 0 6 chr6 61180941 61181118 -88335919 + (TCCC)n Simple_repeat Simple_repeat 3 178 0 2 1051 207 0 0 0 chr6 61182156 61182179 -88334858 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1051 870 150 14 28 chr6 61182183 61182327 -88334710 - B1_Mur4 SINE Alu -8 142 1 2 1051 377 274 35 0 chr6 61182717 61182830 -88334207 + PB1D10 SINE Alu 1 117 0 2 1051 339 89 0 0 chr6 61184863 61184919 -88332118 + (A)n Simple_repeat Simple_repeat 1 56 0 2 1051 403 283 9 19 chr6 61186274 61186382 -88330655 - ORR1E LTR MaLR -112 247 141 2 1051 790 320 35 21 chr6 61186378 61186665 -88330372 - ORR1E-int LTR MaLR -225 1355 1065 2 1051 282 265 193 0 chr6 61186718 61186801 -88330236 - ORR1E-int LTR MaLR -936 644 546 2 1051 1401 0 0 0 chr6 61186804 61186965 -88330072 - L1_Mm LINE L1 -350 5533 5373 2 1051 564 0 0 0 chr6 61186964 61187028 -88330009 + L1_Mm LINE L1 5523 5586 -297 2 1051 9040 4 0 0 chr6 61187028 61188024 -88329013 + L1Md_A LINE L1 5587 6582 0 2 1051 1645 314 22 19 chr6 61188024 61188557 -88328480 - ORR1E-int LTR MaLR -1030 550 16 2 1051 858 275 55 35 chr6 61188574 61188864 -88328173 - ORR1E LTR MaLR -2 357 62 2 1051 303 267 87 65 chr6 61189123 61189247 -88327790 + MLT1J LTR MaLR 110 267 -343 2 1051 3695 288 107 24 chr6 61189710 61191064 -88325973 - Tigger1 DNA MER2_type 0 2418 952 2 1051 22 0 0 0 chr6 61191218 61191240 -88325797 + AT_rich Low_complexity Low_complexity 1 22 0 2 1051 392 37 19 0 chr6 61191240 61191294 -88325743 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 1051 319 324 32 96 chr6 61191371 61191528 -88325509 - MER21B LTR ERV1 -716 147 1 2 1051 539 219 0 0 chr6 61193110 61193206 -88323831 - B3A SINE B2 -93 105 10 2 1051 261 75 0 0 chr6 61193210 61193250 -88323787 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1051 1954 154 17 22 chr6 61193302 61193660 -88323377 - ORR1B2 LTR MaLR -10 357 2 2 1051 387 313 29 41 chr6 61193858 61194028 -88323009 - RMER15 LTR ERVL -129 446 279 2 1051 806 268 105 16 chr6 61194195 61194567 -88322470 + L1M2 LINE L1 3783 4187 -1956 2 1051 25 0 0 0 chr6 61195101 61195126 -88321911 + AT_rich Low_complexity Low_complexity 1 25 0 2 1051 243 88 0 0 chr6 61195396 61195430 -88321607 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1051 582 15 0 0 chr6 61195430 61195496 -88321541 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 1051 189 333 55 44 chr6 61195519 61195610 -88321427 - MIRb SINE MIR -173 95 4 2 1051 573 279 29 29 chr6 61196092 61196232 -88320805 + RSINE1 SINE B4 4 143 -22 2 1051 578 249 19 102 chr6 61197016 61197231 -88319806 - B3A SINE B2 0 198 2 2 1051 356 265 110 15 chr6 61197282 61197507 -88319530 - MER33 DNA MER1_type -69 255 6 2 1051 24 0 0 0 chr6 61199333 61199357 -88317680 + AT_rich Low_complexity Low_complexity 1 24 0 2 1051 256 186 0 44 chr6 61200475 61200565 -88316472 + CT-rich Low_complexity Low_complexity 4 89 0 2 1051 2873 122 42 42 chr6 61201557 61202060 -88314977 - Lx LINE L1 -6 6648 6146 2 1051 981 90 0 25 chr6 61204480 61204640 -88312397 + L1Md_F2 LINE L1 6415 6570 -12 2 1051 683 70 30 0 chr6 61204706 61204806 -88312231 + (TCCCC)n Simple_repeat Simple_repeat 4 106 0 2 1051 3422 37 0 9 chr6 61204917 61205357 -88311680 + MERVL-int LTR ERVL 4936 5371 -114 2 1051 383 137 13 40 chr6 61205357 61205433 -88311604 + ORR1A3-int LTR MaLR 567 640 -1323 2 1051 302 0 0 0 chr6 61205433 61205471 -88311566 + MERVL-int LTR ERVL 5448 5485 0 2 1051 4495 10 0 0 chr6 61205471 61205964 -88311073 + MT2_Mm LTR ERVL 1 493 0 2 1051 287 363 0 73 chr6 61206138 61206248 -88310789 + ID_B1 SINE B4 80 181 -43 2 1051 464 260 9 0 chr6 61206154 61206255 -88310782 + B1_Mur2 SINE Alu 10 116 -4 2 1051 1123 65 0 0 chr6 61206675 61206814 -88310223 + B1_Mus1 SINE Alu 1 139 -9 2 1051 329 0 0 24 chr6 61206814 61206856 -88310181 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2 1051 1924 22 0 0 chr6 61207008 61207233 -88309804 - MT2_Mm LTR ERVL -224 269 45 2 1051 2576 23 0 0 chr6 61207243 61207553 -88309484 - MERVL-int LTR ERVL -5175 310 1 2 1051 559 15 0 0 chr6 61207553 61207620 -88309417 - MT2_Mm LTR ERVL 0 493 427 2 1051 3983 50 0 0 chr6 61207614 61208114 -88308923 - MT-int LTR MaLR -63 1035 536 2 1051 730 280 15 31 chr6 61208525 61208720 -88308317 + B3 SINE B2 19 210 -6 2 1051 596 213 201 15 chr6 61208816 61209022 -88308015 + MTD LTR MaLR 172 398 -21 2 1052 24 77 0 0 chr6 61210966 61211018 -88306019 + AT_rich Low_complexity Low_complexity 1 52 0 2 1052 21 0 0 0 chr6 61211154 61211175 -88305862 + AT_rich Low_complexity Low_complexity 1 21 0 2 1052 358 92 0 38 chr6 61211342 61211421 -88305616 + (TTTTTG)n Simple_repeat Simple_repeat 1 76 0 2 1052 432 0 0 0 chr6 61211650 61211698 -88305339 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1052 303 127 0 0 chr6 61211846 61211909 -88305128 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 2 1052 295 298 130 35 chr6 61212158 61212390 -88304647 + RMER20B LTR ERVK 42 310 -206 3 1052 259 245 65 47 chr6 61212519 61212626 -88304411 + RMER20B LTR ERVK 481 589 -38 3 1052 2782 64 0 6 chr6 61213860 61214222 -88302815 - L1Md_F2 LINE L1 -12 6570 6211 3 1052 300 342 143 38 chr6 61214398 61214769 -88302268 - L1MD2 LINE L1 -4 6355 5946 3 1052 315 0 0 0 chr6 61215097 61215132 -88301905 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 1052 387 0 0 0 chr6 61215173 61215216 -88301821 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 3 1052 572 190 8 101 chr6 61215220 61215349 -88301688 - B1_Mur3 SINE Alu -32 117 1 3 1052 583 232 28 7 chr6 61216952 61217095 -88299942 - B1F SINE Alu -3 146 1 3 1052 226 352 63 8 chr6 61217724 61217850 -88299187 - MIRb SINE MIR -68 200 68 3 1052 317 250 9 0 chr6 61218651 61218759 -88298278 + G-rich Low_complexity Low_complexity 5 113 0 3 1052 256 318 189 24 chr6 61219248 61219544 -88297493 + LTR16B1 LTR ERVL 125 469 -11 3 1052 2753 35 3 3 chr6 61220207 61220548 -88296489 - ORR1A0 LTR MaLR 0 346 6 3 1052 21 0 0 0 chr6 61221198 61221219 -88295818 + GC_rich Low_complexity Low_complexity 1 21 0 3 1052 234 62 0 0 chr6 61221742 61221774 -88295263 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 3 1052 24 32 0 0 chr6 61222217 61222248 -88294789 + AT_rich Low_complexity Low_complexity 1 31 0 3 1052 2030 129 26 70 chr6 61222530 61222913 -88294124 - Lx3C LINE L1 -7 6969 6604 3 1052 22 0 0 0 chr6 61224407 61224429 -88292608 + AT_rich Low_complexity Low_complexity 1 22 0 3 1052 328 216 67 19 chr6 61225063 61225167 -88291870 - B1F SINE Alu 0 149 41 3 1052 302 45 23 0 chr6 61226026 61226070 -88290967 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1052 510 253 5 138 chr6 61226075 61226263 -88290774 - RSINE1 SINE B4 0 165 3 3 1052 1180 130 16 0 chr6 61226679 61226863 -88290174 + B2_Mm1t SINE B2 2 188 -5 3 1052 312 263 44 133 chr6 61230288 61230468 -88286569 - MTEb LTR MaLR -15 364 201 3 1052 903 129 0 7 chr6 61230872 61231012 -88286025 + B2_Mm2 SINE B2 2 140 -55 3 1052 324 0 0 0 chr6 61231015 61231051 -88285986 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1052 405 353 7 0 chr6 61231602 61231738 -88285299 + ID_B1 SINE B4 78 214 -10 3 1052 212 267 33 0 chr6 61232016 61232076 -88284961 + L2c LINE L2 3325 3386 -1 3 1052 250 343 14 28 chr6 61232137 61232209 -88284828 + ID4 SINE ID 12 82 -1 3 1052 30 27 0 0 chr6 61232522 61232559 -88284478 + AT_rich Low_complexity Low_complexity 1 37 0 3 1052 2594 120 44 12 chr6 61232874 61233305 -88283732 + BGLII_A LTR ERVK 1 445 0 3 1052 751 310 100 23 chr6 61233317 61233978 -88283059 - L1MB8 LINE L1 -38 6140 5429 3 1052 385 296 43 29 chr6 61233980 61234119 -88282918 - B1F1 SINE Alu 0 149 9 3 1052 3768 9 121 0 chr6 61234186 61234626 -88282411 - MT2_Mm LTR ERVL 0 493 1 3 1052 715 273 127 45 chr6 61234771 61235438 -88281599 - L1MB8 LINE L1 -967 5179 4458 3 1052 3116 155 11 13 chr6 61235454 61235983 -88281054 - Lx2 LINE L1 0 6997 6470 3 1052 287 306 30 76 chr6 61236737 61236868 -88280169 - ORR1E LTR MaLR -229 130 6 3 1052 1595 340 90 53 chr6 61236886 61237748 -88279289 - MTE2b-int LTR MaLR -91 1489 589 3 1052 1388 94 16 0 chr6 61237748 61237940 -88279097 - B2_Mm2 SINE B2 0 195 1 3 1052 1595 340 90 53 chr6 61237940 61237978 -88279059 - MTE2b-int LTR MaLR -992 588 556 3 1052 389 311 30 22 chr6 61238074 61238209 -88278828 - MTE2b-int LTR MaLR -1444 136 1 3 1052 273 202 171 45 chr6 61238211 61238299 -88278738 - MTE2b LTR MaLR -2 377 279 3 1052 28 29 0 0 chr6 61238661 61238696 -88278341 + AT_rich Low_complexity Low_complexity 1 35 0 3 1052 1144 281 132 10 chr6 61238795 61239153 -88277884 + MTD LTR MaLR 8 419 0 3 1052 1076 88 0 20 chr6 61239164 61239314 -88277723 + B1_Mus1 SINE Alu 2 148 0 3 1052 903 176 0 7 chr6 61239552 61239693 -88277344 + B1_Mus1 SINE Alu 1 141 -7 3 1052 190 29 28 56 chr6 61239693 61239729 -88277308 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1052 198 0 0 0 chr6 61239773 61239795 -88277242 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1052 234 0 0 0 chr6 61239795 61239820 -88277217 + (GA)n Simple_repeat Simple_repeat 1 26 0 3 1052 3335 38 0 17 chr6 61240542 61240945 -88276092 - MTA_Mm LTR MaLR 0 396 1 3 1052 1220 284 90 28 chr6 61241164 61241599 -88275438 - RMER5 LTR ERV1 -40 494 33 3 1052 23 33 0 0 chr6 61241917 61241947 -88275090 + AT_rich Low_complexity Low_complexity 1 30 0 3 1052 234 0 0 0 chr6 61242632 61242658 -88274379 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1052 23 101 0 0 chr6 61244038 61244117 -88272920 + AT_rich Low_complexity Low_complexity 1 79 0 3 1052 481 270 14 7 chr6 61244127 61244265 -88272772 + B1F SINE Alu 1 139 -10 3 1052 1601 157 106 15 chr6 61244413 61244818 -88272219 - RLTR11A2 LTR ERVK 0 527 86 3 1052 348 238 74 67 chr6 61246778 61246913 -88270124 + PB1D10 SINE Alu 14 149 0 3 1052 22 0 0 0 chr6 61246992 61247014 -88270023 + AT_rich Low_complexity Low_complexity 1 22 0 3 1052 1176 62 0 0 chr6 61247834 61247979 -88269058 - B1_Mm SINE Alu -2 145 1 3 1052 1838 150 94 23 chr6 61248462 61248804 -88268233 - RMER19A LTR ERVK 0 737 372 3 1052 447 267 26 8 chr6 61251387 61251504 -88265533 - PB1D7 SINE Alu 0 120 2 3 1052 303 262 15 15 chr6 61252101 61252167 -88264870 - RSINE1 SINE B4 -89 76 11 3 1052 25 0 0 0 chr6 61252533 61252558 -88264479 + AT_rich Low_complexity Low_complexity 1 25 0 3 1052 1700 240 8 5 chr6 61253359 61253740 -88263297 - Lx6 LINE L1 -7 7453 7072 3 1052 477 298 47 19 chr6 61253740 61253952 -88263085 + CYRA11_Mm Unknown Y-chromosome 128 345 -272 3 1052 1155 166 23 14 chr6 61253782 61253996 -88263041 - URR1B DNA MER1_type -4 221 6 3 1052 602 191 90 15 chr6 61254000 61254133 -88262904 - Lx6 LINE L1 -426 7034 6892 3 1052 3908 174 41 19 chr6 61254174 61254930 -88262107 - RLTR25B LTR ERVK -255 773 1 3 1052 209 182 0 0 chr6 61255458 61255491 -88261546 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1052 24 0 0 0 chr6 61255876 61255900 -88261137 + AT_rich Low_complexity Low_complexity 1 24 0 3 1052 596 284 57 38 chr6 61256915 61257127 -88259910 - B3 SINE B2 0 216 1 3 1052 408 40 0 0 chr6 61258148 61258198 -88258839 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 3 1052 303 233 68 0 chr6 61258199 61258272 -88258765 - ORR1D1 LTR MaLR -57 317 240 3 1052 488 214 34 0 chr6 61258268 61258385 -88258652 - ORR1D1 LTR MaLR -251 123 3 3 1052 592 271 197 41 chr6 61258800 61259147 -88257890 - Lx8 LINE L1 -734 6739 6339 3 1052 415 301 14 3 chr6 61259152 61259343 -88257694 + Lx7 LINE L1 5702 5927 -1769 3 1052 428 302 50 45 chr6 61259557 61259758 -88257279 - MTE2a LTR MaLR 0 379 178 3 1052 238 292 0 71 chr6 61259716 61259786 -88257251 + ID4_ SINE ID 19 83 0 3 1052 204 271 81 54 chr6 61262613 61262687 -88254350 + MIR SINE MIR 36 111 -97 3 1052 258 242 0 0 chr6 61262698 61262764 -88254273 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1052 364 297 8 41 chr6 61263329 61263452 -88253585 - B1F SINE Alu 0 149 31 3 1052 1037 46 0 0 chr6 61265005 61265136 -88251901 - L1Md_F2 LINE L1 -362 6220 6090 3 1052 2582 80 0 16 chr6 61265136 61265503 -88251534 + L1Md_F2 LINE L1 6210 6570 -12 3 1052 1160 165 4 70 chr6 61265507 61265748 -88251289 - URR1B DNA MER1_type 0 225 1 3 1052 857 183 75 40 chr6 61267559 61267758 -88249279 - B3 SINE B2 -9 207 2 3 1052 1138 51 7 0 chr6 61269033 61269170 -88247867 + B1_Mus1 SINE Alu 1 138 -10 3 1052 396 0 0 0 chr6 61269170 61269214 -88247823 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 1052 180 0 0 0 chr6 61270469 61270489 -88246548 + (TTA)n Simple_repeat Simple_repeat 1 20 0 3 1052 29 28 0 0 chr6 61271149 61271185 -88245852 + AT_rich Low_complexity Low_complexity 1 36 0 3 1052 402 308 93 28 chr6 61271520 61271767 -88245270 - LTR37B LTR ERV1 -72 396 134 3 1052 383 317 0 0 chr6 61272136 61272237 -88244800 - RSINE1 SINE B4 -62 103 3 3 1052 21 0 0 0 chr6 61272313 61272334 -88244703 + AT_rich Low_complexity Low_complexity 1 21 0 3 1052 25 31 0 0 chr6 61273358 61273390 -88243647 + AT_rich Low_complexity Low_complexity 1 32 0 3 1052 264 254 0 0 chr6 61273425 61273480 -88243557 - B4A SINE B4 -4 288 234 3 1052 333 285 151 24 chr6 61273555 61273591 -88243446 + L1_Rod LINE L1 4243 4281 -1596 3 1052 549 0 0 0 chr6 61273591 61273652 -88243385 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1052 333 285 151 24 chr6 61273652 61273820 -88243217 + L1_Rod LINE L1 4282 4475 -1402 3 1052 668 288 30 21 chr6 61273830 61274160 -88242877 + L1_Rod LINE L1 4612 4944 -903 3 1052 584 251 79 20 chr6 61274172 61274424 -88242613 - L1_Rod LINE L1 -629 5218 4952 3 1052 851 329 0 47 chr6 61277684 61277942 -88239095 - B4A SINE B4 -1 291 46 3 1052 1590 200 86 6 chr6 61277962 61278299 -88238738 - ORR1B2 LTR MaLR -3 364 1 3 1052 22 0 0 0 chr6 61278848 61278870 -88238167 + AT_rich Low_complexity Low_complexity 1 22 0 3 1052 1497 236 54 3 chr6 61278919 61279272 -88237765 - MTD LTR MaLR -9 410 40 3 1052 474 18 0 0 chr6 61279296 61279351 -88237686 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1052 219 266 102 96 chr6 61280747 61280934 -88236103 + L2a LINE L2 3197 3384 -42 3 1052 863 296 56 14 chr6 61284480 61284840 -88232197 + MTE2a LTR MaLR 2 376 -3 3 1052 8072 63 15 0 chr6 61285231 61286245 -88230792 - L1_Mus3 LINE L1 -3 6635 5607 3 1052 2335 133 3 3 chr6 61286250 61286611 -88230426 + L1_Mm LINE L1 5262 5622 -261 3 1052 306 280 176 9 chr6 61287056 61287164 -88229873 + RSINE1 SINE B4 4 129 -36 3 1052 3211 42 118 0 chr6 61287223 61287648 -88229389 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1052 6280 66 12 11 chr6 61287650 61288478 -88228559 - IAPEz-int LTR ERVK -2 6479 5651 3 1052 2641 76 0 3 chr6 61288471 61288814 -88228223 - IAPEz-int LTR ERVK -4781 1700 1359 3 1052 3571 75 20 39 chr6 61288814 61289467 -88227570 - IAPEz-int LTR ERVK -5819 662 168 3 1052 253 296 0 0 chr6 61289467 61289521 -88227516 - RLTR27 LTR ERVK -34 275 222 3 1052 988 117 30 86 chr6 61289521 61289718 -88227319 - IAPEz-int LTR ERVK -6287 194 9 3 1052 2525 42 158 0 chr6 61289719 61290074 -88226963 - IAPLTR2_Mm LTR ERVK 0 411 1 3 1052 1584 234 25 22 chr6 61290074 61290429 -88226608 + ORR1D1 LTR MaLR 19 374 0 3 1052 1191 328 25 40 chr6 61290446 61290919 -88226118 + Lx8 LINE L1 6827 7292 -181 3 1052 23 33 0 0 chr6 61291023 61291053 -88225984 + AT_rich Low_complexity Low_complexity 1 30 0 4 1052 770 314 83 4 chr6 61291405 61291683 -88225354 - Lx8 LINE L1 -566 6907 6608 4 1052 308 298 101 64 chr6 61292878 61293204 -88223833 + L1M5 LINE L1 4173 4510 -1636 4 1052 5099 53 8 3 chr6 61293222 61293881 -88223156 + L1Md_F3 LINE L1 5909 6570 -14 4 1052 394 315 65 62 chr6 61294426 61294717 -88222320 + Lx8 LINE L1 7176 7467 -6 4 1052 495 0 0 0 chr6 61294773 61294828 -88222209 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1052 405 0 0 0 chr6 61294828 61294872 -88222165 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1052 757 148 7 20 chr6 61294932 61295084 -88221953 + GA-rich Low_complexity Low_complexity 4 153 0 4 1052 764 10 0 0 chr6 61295136 61295234 -88221803 - L1Md_T LINE L1 -2 6580 6483 4 1052 4273 56 6 4 chr6 61295448 61295989 -88221048 + L1Md_F2 LINE L1 6041 6582 0 4 1052 25 51 0 0 chr6 61296957 61296996 -88220041 + AT_rich Low_complexity Low_complexity 1 39 0 4 1052 21 36 0 0 chr6 61299184 61299212 -88217825 + AT_rich Low_complexity Low_complexity 1 28 0 4 1052 21 0 0 0 chr6 61299333 61299354 -88217683 + AT_rich Low_complexity Low_complexity 1 21 0 4 1052 924 294 17 108 chr6 61299568 61299976 -88217061 - MTE2a LTR MaLR -8 371 1 4 1052 409 338 95 43 chr6 61300974 61301299 -88215738 + LTR40a LTR ERVL 4 345 -174 4 1052 23 0 0 0 chr6 61301746 61301769 -88215268 + AT_rich Low_complexity Low_complexity 1 23 0 4 1052 679 305 48 12 chr6 61302085 61302337 -88214700 - Lx8 LINE L1 -334 7139 6879 4 1052 492 174 22 0 chr6 61302486 61302578 -88214459 - ORR1D1 LTR MaLR -275 99 6 4 1052 1164 324 77 25 chr6 61302582 61303427 -88213610 - L1_Mur3 LINE L1 -229 5651 4763 4 1052 885 306 109 59 chr6 61303442 61303655 -88213382 - L1M2 LINE L1 -1044 5096 4900 4 1052 1066 217 14 0 chr6 61303655 61303867 -88213170 - B3 SINE B2 0 216 2 4 1052 937 306 109 59 chr6 61303867 61304297 -88212740 - L1M2 LINE L1 -1241 4899 4445 4 1052 3392 30 5 0 chr6 61304297 61304691 -88212346 - MTA_Mm LTR MaLR 0 396 1 4 1052 937 309 113 43 chr6 61304691 61305479 -88211558 - L1M2 LINE L1 -1696 4447 3596 4 1052 573 56 33 0 chr6 61305526 61305616 -88211421 + (TC)n Simple_repeat Simple_repeat 2 94 0 4 1052 235 275 78 55 chr6 61305617 61305925 -88211112 - L1M2 LINE L1 -2576 3567 3253 4 1052 358 333 0 19 chr6 61306825 61306929 -88210108 + ID_B1 SINE B4 2 103 -121 4 1052 23 33 0 0 chr6 61307207 61307237 -88209800 + AT_rich Low_complexity Low_complexity 1 30 0 4 1052 1641 211 88 11 chr6 61308451 61308815 -88208222 - MTD LTR MaLR -8 411 20 4 1052 269 39 115 0 chr6 61308818 61308870 -88208167 + Lx LINE L1 6597 6654 0 4 1052 325 299 0 25 chr6 61308975 61308988 -88208049 - L1Md_F3 LINE L1 -416 6168 6158 4 1052 1333 177 8 0 chr6 61308988 61309236 -88207801 - Lx2B LINE L1 -4 6996 6747 4 1052 2553 136 21 21 chr6 61309236 61309671 -88207366 - Lx2B LINE L1 -502 6498 6064 4 1052 686 89 20 0 chr6 61309746 61309847 -88207190 + B1_Mus1 SINE Alu 39 141 -7 4 1052 230 95 24 0 chr6 61309847 61309889 -88207148 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 4 1052 1417 50 6 0 chr6 61310013 61310194 -88206843 - L1Md_T LINE L1 -2 6580 6399 4 1052 3227 33 3 0 chr6 61310194 61310583 -88206454 + L1Md_T LINE L1 5613 6002 -580 4 1052 380 0 0 0 chr6 61310578 61310620 -88206417 + L1Md_T LINE L1 6183 6224 -358 4 1052 25 51 0 0 chr6 61310750 61310789 -88206248 + AT_rich Low_complexity Low_complexity 1 39 0 4 1052 21 0 0 0 chr6 61311992 61312013 -88205024 + AT_rich Low_complexity Low_complexity 1 21 0 4 1052 237 375 28 33 chr6 61314726 61314908 -88202129 + MER77 LTR ERVL 419 599 -8 4 1052 234 0 0 0 chr6 61315081 61315107 -88201930 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 4 1052 1182 41 7 0 chr6 61315245 61315390 -88201647 - B1_Mm SINE Alu 0 147 2 4 1052 23 92 0 0 chr6 61315885 61315950 -88201087 + AT_rich Low_complexity Low_complexity 1 65 0 4 1052 330 156 0 0 chr6 61316544 61316608 -88200429 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1052 636 270 22 87 chr6 61316957 61317092 -88199945 - B3 SINE B2 0 216 84 4 1052 189 0 0 0 chr6 61317092 61317113 -88199924 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1052 636 270 22 87 chr6 61317113 61317208 -88199829 - B3 SINE B2 -133 83 1 4 1052 260 316 111 35 chr6 61318574 61318800 -88198237 - L1MA7 LINE L1 -230 6061 5819 4 1052 351 0 0 0 chr6 61319007 61319046 -88197991 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1052 333 0 0 0 chr6 61319046 61319082 -88197955 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1052 3720 270 66 17 chr6 61319110 61320498 -88196539 + L1_Mur3 LINE L1 3701 5157 -723 4 1052 2570 158 14 16 chr6 61321405 61321849 -88195188 + Lx2B LINE L1 6082 6524 -476 4 1052 3340 110 57 111 chr6 61321854 61322632 -88194405 - RMER17A LTR ERVK -15 736 1 4 1052 2117 178 2 25 chr6 61322632 61323025 -88194012 + Lx2B LINE L1 6519 6902 -98 4 1052 289 318 11 0 chr6 61323007 61323095 -88193942 - L1_Mur3 LINE L1 -659 5221 5133 4 1052 1035 233 20 0 chr6 61323086 61323331 -88193706 - L1_Mur3 LINE L1 -936 4944 4695 4 1052 513 321 24 12 chr6 61323340 61323510 -88193527 + Lx7 LINE L1 6534 6705 -991 4 1052 210 71 0 0 chr6 61323619 61323647 -88193390 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1052 1337 133 0 167 chr6 61324142 61324384 -88192653 - L1_Mur2 LINE L1 -1069 4808 4590 4 1052 1140 51 0 0 chr6 61324384 61324521 -88192516 + B1_Mus2 SINE Alu 3 139 -8 4 1052 218 56 0 27 chr6 61324521 61324558 -88192479 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1052 1337 133 0 167 chr6 61324558 61324656 -88192381 - L1_Mur2 LINE L1 -1288 4589 4525 4 1052 3343 133 25 0 chr6 61324656 61325211 -88191826 + L1_Mur2 LINE L1 3965 4533 -1344 4 1052 25 31 0 0 chr6 61326019 61326051 -88190986 + AT_rich Low_complexity Low_complexity 1 32 0 4 1052 249 196 43 21 chr6 61327314 61327408 -88189629 + (TA)n Simple_repeat Simple_repeat 1 96 0 4 1052 2896 314 25 31 chr6 61327952 61329095 -88187942 + Lx9 LINE L1 6197 7403 -241 4 1052 609 110 0 0 chr6 61329095 61329186 -88187851 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 4 1052 2532 330 53 27 chr6 61329186 61329269 -88187768 + Lx9 LINE L1 7339 7421 -52 4 1052 342 0 0 0 chr6 61329319 61329357 -88187680 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1052 32 26 0 0 chr6 61329663 61329702 -88187335 + AT_rich Low_complexity Low_complexity 1 39 0 4 1052 1902 300 43 40 chr6 61330561 61331217 -88185820 + Lx9 LINE L1 6357 7014 -630 4 1052 380 179 178 9 chr6 61331217 61331274 -88185763 - ORR1C2 LTR MaLR -3 381 307 4 1052 612 188 23 93 chr6 61331274 61331403 -88185634 + B1_Mus1 SINE Alu 1 120 0 4 1052 719 296 136 30 chr6 61331392 61331709 -88185328 - ORR1D1 LTR MaLR -27 343 1 4 1052 1131 274 89 35 chr6 61331709 61332193 -88184844 + Lx9 LINE L1 7011 7520 -124 4 1052 244 309 49 0 chr6 61332768 61332849 -88184188 - MIRc SINE MIR -16 252 168 4 1052 27 0 0 0 chr6 61334045 61334072 -88182965 + AT_rich Low_complexity Low_complexity 1 27 0 4 1052 26 30 0 0 chr6 61334251 61334284 -88182753 + AT_rich Low_complexity Low_complexity 1 33 0 4 1052 426 297 145 23 chr6 61334458 61334761 -88182276 - MER110A LTR ERV1 0 468 129 4 1052 226 289 0 154 chr6 61335611 61335734 -88181303 + MTD LTR MaLR 14 117 -302 4 1052 336 143 0 0 chr6 61336093 61336149 -88180888 + (CAA)n Simple_repeat Simple_repeat 2 57 0 4 1052 2187 137 62 0 chr6 61337091 61337448 -88179589 + MTC LTR MaLR 1 379 -42 4 1052 971 248 126 46 chr6 61337962 61338415 -88178622 + Lx9 LINE L1 7141 7629 -15 4 1052 37 62 0 0 chr6 61339396 61339461 -88177576 + AT_rich Low_complexity Low_complexity 1 65 0 4 1052 346 272 174 51 chr6 61339495 61339673 -88177364 - RMER15 LTR ERVL -55 520 321 4 1052 291 230 45 173 chr6 61339715 61339894 -88177143 - RMER15 LTR ERVL -416 159 4 4 1052 288 271 123 0 chr6 61340091 61340213 -88176824 + MLT1A0 LTR MaLR 217 353 -12 4 1052 279 0 0 0 chr6 61341238 61341269 -88175768 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1053 243 296 86 56 chr6 61342090 61342323 -88174714 + RLTR21 LTR ERVK 1069 1308 -264 4 1053 236 200 0 18 chr6 61342332 61342388 -88174649 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1053 1153 86 63 21 chr6 61342838 61343029 -88174008 - L1Md_F2 LINE L1 0 6582 6384 4 1053 3629 57 0 4 chr6 61343029 61343485 -88173552 + L1Md_F2 LINE L1 5925 6378 -204 4 1053 1276 103 22 0 chr6 61343521 61343705 -88173332 + B2_Mm1t SINE B2 2 189 -4 4 1053 1326 262 22 146 chr6 61344311 61344652 -88172385 + RLTR12A LTR ERVK 1 284 -284 4 1053 1090 89 0 22 chr6 61344652 61344836 -88172201 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1053 1326 262 22 146 chr6 61344836 61345097 -88171940 + RLTR12A LTR ERVK 285 528 -40 4 1053 1962 81 11 3 chr6 61345298 61345582 -88171455 + L1_Mus3 LINE L1 6346 6631 -7 4 1053 739 261 84 16 chr6 61346451 61346606 -88170431 - MTE2a LTR MaLR -50 329 161 4 1053 558 0 0 0 chr6 61346606 61346668 -88170369 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1053 739 295 70 63 chr6 61346668 61346791 -88170246 - MTE2a LTR MaLR -219 160 56 4 1053 397 326 99 54 chr6 61346926 61347260 -88169777 - Lx9 LINE L1 -174 7470 7122 4 1053 490 313 44 25 chr6 61347259 61347462 -88169575 - Lx8 LINE L1 -867 6606 6400 4 1053 2167 195 11 41 chr6 61347493 61347953 -88169084 - RMER6B LTR ERVK -15 446 1 4 1053 348 312 22 7 chr6 61347954 61348093 -88168944 - Lx8 LINE L1 -1070 6403 6263 4 1053 230 350 48 55 chr6 61349482 61349627 -88167410 + RMER15 LTR ERVL 356 499 -76 4 1053 2827 58 138 94 chr6 61351441 61351896 -88165141 - MT2C_Mm LTR ERVL 0 475 1 4 1053 4611 153 11 0 chr6 61352301 61353018 -88164019 + RMER19A LTR ERVK 13 737 0 4 1053 2021 275 61 6 chr6 61353398 61354034 -88163003 - Lx7 LINE L1 -279 7417 6747 4 1053 2909 213 78 33 chr6 61354048 61354434 -88162603 + L1_Mur3 LINE L1 1710 2123 -3757 4 1053 2255 97 3 0 chr6 61354434 61354744 -88162293 - Lx3_Mus LINE L1 0 7009 6699 4 1053 2909 213 78 33 chr6 61354744 61355275 -88161762 + L1_Mur3 LINE L1 2124 2669 -3211 4 1053 983 164 137 6 chr6 61355276 61355507 -88161530 + L1_Mur3 LINE L1 3932 4205 -1941 4 1053 447 276 67 65 chr6 61355609 61355883 -88161154 - RMER20A LTR ERVK -422 486 225 4 1053 3669 178 34 3 chr6 61356107 61356810 -88160227 - L1_Mm LINE L1 -361 5522 4798 4 1053 8102 160 23 6 chr6 61356811 61357272 -88159765 + L1_Mm LINE L1 3019 3480 -2403 4 1053 378 16 65 16 chr6 61357272 61357334 -88159703 + (CAAA)n Simple_repeat Simple_repeat 4 68 0 4 1053 8102 160 23 6 chr6 61357334 61358412 -88158625 + L1_Mm LINE L1 3481 4584 -1299 4 1053 5547 24 53 4 chr6 61358414 61359127 -88157910 + MTA_Mm-int LTR MaLR 351 1098 0 4 1053 3460 20 2 0 chr6 61359127 61359522 -88157515 + MTA_Mm LTR MaLR 1 396 0 4 1053 27 62 0 0 chr6 61361164 61361212 -88155825 + AT_rich Low_complexity Low_complexity 1 48 0 4 1053 248 154 19 0 chr6 61361889 61361941 -88155096 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1053 1751 160 12 64 chr6 61361999 61362326 -88154711 - ORR1A4 LTR MaLR 0 329 20 5 1053 8208 92 6 36 chr6 61363624 61364871 -88152166 - Lx3_Mus LINE L1 0 7009 5801 5 1053 538 301 39 29 chr6 61365107 61365312 -88151725 - B3 SINE B2 -9 207 1 5 1053 432 295 19 19 chr6 61365486 61365645 -88151392 - MLT1B LTR MaLR -229 161 3 5 1053 330 132 0 0 chr6 61365720 61365773 -88151264 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1053 246 194 0 0 chr6 61365772 61365844 -88151193 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1053 373 226 83 50 chr6 61365863 61365984 -88151053 - B1F1 SINE Alu -17 132 8 5 1053 29 60 0 0 chr6 61366167 61366217 -88150820 + AT_rich Low_complexity Low_complexity 1 50 0 5 1053 180 77 0 0 chr6 61367244 61367270 -88149767 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1053 326 379 21 0 chr6 61367509 61367649 -88149388 + ID_B1 SINE B4 80 222 -2 5 1053 360 0 0 0 chr6 61368269 61368309 -88148728 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1053 733 265 47 11 chr6 61368313 61368504 -88148533 - Lx7 LINE L1 -694 7002 6805 5 1053 377 299 7 35 chr6 61369457 61369599 -88147438 - Tigger6a DNA MER2_type -627 456 319 5 1053 389 200 0 24 chr6 61369689 61369703 -88147334 + L1_Mur1 LINE L1 4589 4602 -1284 5 1053 2963 64 10 2 chr6 61369703 61370096 -88146941 - L1_Mus2 LINE L1 0 6566 6171 5 1053 488 100 0 0 chr6 61370096 61370166 -88146871 + L1_Mm LINE L1 4599 4668 -1215 5 1053 4302 93 5 3 chr6 61370201 61370793 -88146244 + L1_Mus1 LINE L1 5975 6567 0 5 1053 302 319 56 14 chr6 61370836 61370979 -88146058 - Tigger6a DNA MER2_type -929 154 6 5 1053 1074 87 0 0 chr6 61371059 61371197 -88145840 - B1_Mus1 SINE Alu -9 139 2 5 1053 1104 303 30 36 chr6 61371320 61371683 -88145354 - MTE2b LTR MaLR -11 368 8 5 1053 499 339 50 0 chr6 61371842 61372022 -88145015 + MLT1E2 LTR MaLR 439 627 0 5 1053 216 0 0 0 chr6 61372103 61372127 -88144910 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1053 333 0 0 0 chr6 61372239 61372276 -88144761 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1053 305 331 74 39 chr6 61373407 61373609 -88143428 - B2_Mm2 SINE B2 -2 214 1 5 1053 228 35 0 0 chr6 61375324 61375353 -88141684 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1053 348 176 0 0 chr6 61376903 61376971 -88140066 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1053 271 305 142 9 chr6 61377917 61378023 -88139014 + PB1D7 SINE Alu 1 120 0 5 1053 1932 192 71 80 chr6 61378117 61378616 -88138421 + Lx5 LINE L1 6569 7046 -4 5 1053 2141 195 33 20 chr6 61379987 61380436 -88136601 + RMER4A LTR ERVK 12 466 0 5 1053 544 264 126 34 chr6 61382213 61382476 -88134561 + Lx7 LINE L1 7081 7367 -329 5 1053 486 0 0 0 chr6 61382548 61382602 -88134435 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1053 466 330 6 6 chr6 61383502 61383682 -88133355 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1053 383 225 0 27 chr6 61383706 61383779 -88133258 - B4 SINE B4 0 292 222 5 1053 231 250 0 16 chr6 61383795 61383856 -88133181 - Lx8 LINE L1 -10 7463 7404 5 1053 424 337 141 18 chr6 61383889 61384173 -88132864 + Lx8 LINE L1 6784 7102 -371 5 1053 556 321 70 9 chr6 61384175 61384389 -88132648 - B4A SINE B4 -60 232 6 5 1053 260 312 99 12 chr6 61385233 61385395 -88131642 - MIR SINE MIR -14 248 73 5 1053 337 322 58 19 chr6 61385845 61386000 -88131037 + RSINE1 SINE B4 4 164 -1 5 1053 656 206 102 12 chr6 61388534 61388701 -88128336 + Lx3C LINE L1 6792 6973 -3 5 1053 21 36 0 0 chr6 61388834 61388862 -88128175 + AT_rich Low_complexity Low_complexity 1 28 0 5 1053 5457 32 0 1 chr6 61389489 61390137 -88126900 + L1Md_T LINE L1 5933 6579 -3 5 1053 201 74 0 0 chr6 61390360 61390387 -88126650 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1053 262 225 14 0 chr6 61390391 61390462 -88126575 + L1MB3 LINE L1 6005 6076 -107 5 1053 601 306 161 25 chr6 61390582 61390867 -88126170 - MT2A LTR ERVL -146 387 64 5 1053 444 245 133 61 chr6 61390930 61391126 -88125911 + B3 SINE B2 3 212 -4 5 1053 277 323 127 30 chr6 61391227 61391361 -88125676 - B1F1 SINE Alu 0 149 3 5 1053 1146 68 31 6 chr6 61392280 61392443 -88124594 - L1_Mus2 LINE L1 -2 6564 6398 5 1053 655 241 130 41 chr6 61392751 61393089 -88123948 - RLTR9A LTR ERVK 0 368 1 5 1053 3258 118 29 17 chr6 61394500 61395016 -88122021 - Lx LINE L1 -2 6652 6131 5 1053 2155 94 39 6 chr6 61395016 61395347 -88121690 + L1_Mus4 LINE L1 5629 5970 -666 5 1053 16538 71 4 2 chr6 61395880 61398794 -88118243 - L1Md_F2 LINE L1 -14 6568 3652 5 1053 40986 8 0 2 chr6 61398786 61404918 -88112119 - L1Md_A LINE L1 0 6582 465 5 1053 8324 92 2 0 chr6 61404919 61406100 -88110937 - L1Md_F2 LINE L1 -2208 3675 2493 5 1053 8717 92 5 0 chr6 61406101 61407335 -88109702 - L1_Mm LINE L1 -578 5305 4066 5 1053 405 284 121 0 chr6 61409013 61409129 -88107908 + MTEb LTR MaLR 9 138 -241 5 1053 869 313 82 93 chr6 61409255 61409780 -88107257 + MTE-int LTR MaLR 1 519 -1061 5 1053 4355 64 9 12 chr6 61409829 61410395 -88106642 - LTRIS2 LTR ERV1 0 564 1 5 1053 819 358 82 45 chr6 61410434 61410923 -88106114 + MTE-int LTR MaLR 706 1212 -368 5 1053 419 0 20 0 chr6 61412016 61412067 -88104970 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 5 1053 399 323 108 0 chr6 61412103 61412270 -88104767 - B3A SINE B2 -13 185 1 5 1053 1113 44 0 7 chr6 61413231 61413368 -88103669 + B1_Mm SINE Alu 2 137 -10 5 1053 240 59 0 0 chr6 61413368 61413402 -88103635 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1053 23 0 0 0 chr6 61413458 61413481 -88103556 + AT_rich Low_complexity Low_complexity 1 23 0 5 1053 260 0 57 0 chr6 61415093 61415128 -88101909 + (TATG)n Simple_repeat Simple_repeat 3 39 0 5 1053 261 220 78 18 chr6 61415155 61415322 -88101715 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 5 1053 23 0 0 0 chr6 61415613 61415636 -88101401 + AT_rich Low_complexity Low_complexity 1 23 0 5 1053 348 94 0 0 chr6 61416239 61416292 -88100745 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1053 1029 259 19 15 chr6 61416331 61416598 -88100439 - Lx6 LINE L1 -20 7440 7173 5 1053 494 291 79 18 chr6 61417803 61418030 -88099007 - Lx9 LINE L1 -176 7468 7228 5 1053 235 329 41 64 chr6 61418022 61418194 -88098843 - Lx9 LINE L1 -542 7102 6935 5 1053 617 301 46 9 chr6 61418247 61418465 -88098572 - Lx9 LINE L1 -789 6855 6630 5 1053 509 335 6 50 chr6 61418465 61418644 -88098393 - B3 SINE B2 -8 208 38 5 1053 452 335 76 30 chr6 61418941 61419138 -88097899 - MER47B DNA MER2_type -174 244 39 5 1053 218 306 154 16 chr6 61420142 61420265 -88096772 - L2 LINE L2 -989 2430 2291 5 1053 21 0 0 0 chr6 61422535 61422556 -88094481 + AT_rich Low_complexity Low_complexity 1 21 0 5 1053 23 0 0 0 chr6 61423164 61423187 -88093850 + AT_rich Low_complexity Low_complexity 1 23 0 5 1053 2598 205 37 45 chr6 61423731 61424292 -88092745 + RLTR25B LTR ERVK 1 557 -471 5 1053 182 37 0 36 chr6 61424452 61424480 -88092557 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1053 198 143 0 0 chr6 61425138 61425173 -88091864 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1053 34442 68 7 8 chr6 61426551 61432842 -88084195 - L1Md_F2 LINE L1 -12 6570 280 5 1053 23 33 0 0 chr6 61433499 61433529 -88083508 + AT_rich Low_complexity Low_complexity 1 30 0 5 1053 396 155 0 0 chr6 61434557 61434628 -88082409 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1053 818 265 45 0 chr6 61434933 61435133 -88081904 + B3 SINE B2 6 214 -2 5 1053 27 29 0 0 chr6 61435133 61435167 -88081870 + AT_rich Low_complexity Low_complexity 1 34 0 5 1053 23 33 0 0 chr6 61435585 61435615 -88081422 + AT_rich Low_complexity Low_complexity 1 30 0 5 1053 1231 183 151 17 chr6 61435965 61436334 -88080703 - RMER6D LTR ERVK 0 720 259 5 1053 1932 60 83 4 chr6 61436348 61436614 -88080423 - L1_Mus2 LINE L1 0 6566 6280 5 1053 1340 85 0 36 chr6 61436614 61436809 -88080228 + L1_Mus2 LINE L1 6055 6242 -324 5 1053 1182 190 89 4 chr6 61436809 61437068 -88079969 - RMER6D LTR ERVK -431 289 9 5 1053 21 0 0 0 chr6 61437459 61437480 -88079557 + AT_rich Low_complexity Low_complexity 1 21 0 5 1053 4454 49 14 2 chr6 61437700 61438253 -88078784 - LTRIS2 LTR ERV1 0 564 5 5 1053 872 184 24 6 chr6 61440930 61441100 -88075937 - URR1A DNA MER1_type 0 226 54 5 1053 23 0 0 0 chr6 61443732 61443755 -88073282 + AT_rich Low_complexity Low_complexity 1 23 0 5 1053 323 284 98 0 chr6 61443755 61443857 -88073180 + PB1D7 SINE Alu 6 117 -3 5 1053 37183 37 3 35 chr6 61444172 61448043 -88068994 - L1Md_F2 LINE L1 -1 6584 2753 5 1053 4528 44 2 0 chr6 61448043 61448593 -88068444 - L1Md_T LINE L1 0 6582 6032 5 1053 37183 49 1 36 chr6 61448593 61451136 -88065901 - L1Md_F2 LINE L1 -3134 2752 284 5 1053 227 237 52 13 chr6 61451969 61452046 -88064991 - RMER1C Other Other -3 1339 1260 5 1053 2691 314 65 39 chr6 61451994 61453936 -88063101 - Lx8 LINE L1 -5 7468 5475 5 1053 653 261 32 68 chr6 61453945 61454323 -88062714 - RLTR46 LTR ERVK 0 357 1 5 1053 350 290 25 92 chr6 61454603 61454709 -88062328 - L1MC4 LINE L1 -5170 1045 952 5 1053 333 100 0 28 chr6 61454709 61454781 -88062256 - Lx LINE L1 0 6654 6585 5 1053 350 290 25 92 chr6 61454781 61454913 -88062124 - L1MC4 LINE L1 -5264 951 824 5 1053 31 58 0 0 chr6 61456256 61456308 -88060729 + AT_rich Low_complexity Low_complexity 1 52 0 5 1053 216 330 56 11 chr6 61456431 61456520 -88060517 + PB1D10 SINE Alu 10 102 -15 5 1053 207 0 0 0 chr6 61456719 61456742 -88060295 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1053 603 260 8 24 chr6 61456742 61456868 -88060169 - B1_Mur4 SINE Alu -11 139 16 5 1053 269 333 0 61 chr6 61456974 61457073 -88059964 - PB1D10 SINE Alu -21 96 4 5 1053 2250 147 40 52 chr6 61458128 61458609 -88058428 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1053 20990 16 1 2 chr6 61458609 61460971 -88056066 - IAPEz-int LTR ERVK 0 6481 4123 5 1053 914 81 24 0 chr6 61460973 61461096 -88055941 - IAPEz-int LTR ERVK -2770 4910 4785 6 1053 1846 111 4 4 chr6 61461093 61461355 -88055682 - IAPEz-int LTR ERVK -5183 2497 2236 6 1053 442 66 0 32 chr6 61461344 61461407 -88055630 - IAPEz-int LTR ERVK -5062 1419 1359 6 1053 4350 61 68 23 chr6 61461407 61462025 -88055012 - IAPEz-int LTR ERVK -5819 662 17 6 1053 2247 153 40 52 chr6 61462048 61462529 -88054508 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1053 228 289 17 34 chr6 61462919 61463037 -88054000 + (CATATA)n Simple_repeat Simple_repeat 3 118 0 6 1053 1957 161 28 17 chr6 61463042 61463396 -88053641 - ORR1B2 LTR MaLR -8 359 2 6 1053 198 0 0 0 chr6 61466920 61466942 -88050095 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1053 432 0 0 0 chr6 61467100 61467148 -88049889 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1053 201 39 0 0 chr6 61467149 61467175 -88049862 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1053 46 19 0 0 chr6 61468031 61468084 -88048953 + AT_rich Low_complexity Low_complexity 1 53 0 6 1053 23 68 0 0 chr6 61468150 61468194 -88048843 + AT_rich Low_complexity Low_complexity 1 44 0 6 1053 2551 257 118 77 chr6 61468513 61469475 -88047562 - ORR1D-int LTR MaLR -71 1299 298 6 1053 1122 291 17 51 chr6 61469449 61469800 -88047237 - MTC LTR MaLR -79 342 4 6 1053 672 225 31 0 chr6 61469942 61470071 -88046966 + B3 SINE B2 1 133 -83 6 1053 21 36 0 0 chr6 61470128 61470156 -88046881 + AT_rich Low_complexity Low_complexity 1 28 0 6 1053 273 118 0 0 chr6 61470161 61470212 -88046825 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1053 528 16 0 0 chr6 61470332 61470393 -88046644 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 1053 261 333 12 12 chr6 61470902 61470984 -88046053 + ID4_ SINE ID 2 83 0 6 1053 194 62 31 0 chr6 61471019 61471051 -88045986 + (TTG)n Simple_repeat Simple_repeat 2 34 0 6 1053 610 313 30 70 chr6 61471232 61471531 -88045506 + B4 SINE B4 2 288 -4 6 1053 252 0 0 0 chr6 61471927 61471955 -88045082 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 6 1053 21 0 0 0 chr6 61472474 61472495 -88044542 + AT_rich Low_complexity Low_complexity 1 21 0 6 1054 1923 161 16 88 chr6 61473618 61474041 -88042996 - RLTR9C LTR ERVK 0 393 1 6 1054 582 265 26 26 chr6 61474102 61474257 -88042780 + ID_B1 SINE B4 12 166 -58 6 1054 601 327 140 95 chr6 61474318 61474676 -88042361 + MTE2a LTR MaLR 1 374 -5 6 1054 25 0 0 0 chr6 61475222 61475247 -88041790 + AT_rich Low_complexity Low_complexity 1 25 0 6 1054 216 0 0 0 chr6 61475521 61475545 -88041492 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 6 1054 1585 41 0 15 chr6 61475806 61476002 -88041035 + B2_Mm1a SINE B2 1 193 0 6 1054 4792 89 18 11 chr6 61476747 61477416 -88039621 - Lx3_Mus LINE L1 -196 6813 6140 6 1054 722 325 19 5 chr6 61477419 61477629 -88039408 - B4A SINE B4 -75 217 5 6 1054 21 0 0 0 chr6 61478072 61478093 -88038944 + AT_rich Low_complexity Low_complexity 1 21 0 6 1054 321 172 0 0 chr6 61478965 61479029 -88038008 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1054 221 270 0 13 chr6 61479062 61479137 -88037900 + (TA)n Simple_repeat Simple_repeat 1 74 0 6 1054 695 71 10 0 chr6 61480313 61480411 -88036626 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 6 1054 519 288 7 33 chr6 61480414 61480565 -88036472 - B1_Mus1 SINE Alu -1 147 1 6 1054 1003 315 129 42 chr6 61481289 61482342 -88034695 + MTC-int LTR MaLR 2 1236 -22 6 1054 232 319 64 0 chr6 61483109 61483203 -88033834 + PB1D10 SINE Alu 17 116 -1 6 1054 270 335 73 57 chr6 61483642 61483819 -88033218 + MLT1E1A LTR MaLR 499 678 -2 6 1054 716 297 100 53 chr6 61484284 61484604 -88032433 + Lx8 LINE L1 7134 7468 -5 6 1054 312 328 227 37 chr6 61485375 61485723 -88031314 + MLT1D LTR MaLR 3 416 -89 6 1054 1346 220 57 40 chr6 61486108 61486459 -88030578 - ORR1D1 LTR MaLR 0 374 18 6 1054 500 247 117 1 chr6 61486471 61486630 -88030407 - ORR1D1-int LTR MaLR -6 1364 1206 6 1054 261 182 0 0 chr6 61486633 61486688 -88030349 + A-rich Low_complexity Low_complexity 1 55 0 6 1054 1675 238 90 27 chr6 61486701 61487435 -88029602 - ORR1D1-int LTR MaLR -536 834 58 6 1054 389 319 5 86 chr6 61487944 61488153 -88028884 - L1M2 LINE L1 -3814 2329 2138 6 1054 28 48 0 0 chr6 61488370 61488412 -88028625 + AT_rich Low_complexity Low_complexity 1 42 0 6 1054 208 161 49 12 chr6 61488423 61488505 -88028532 + (TTTA)n Simple_repeat Simple_repeat 2 86 0 6 1054 31 0 0 0 chr6 61488701 61488732 -88028305 + AT_rich Low_complexity Low_complexity 1 31 0 6 1054 282 248 90 8 chr6 61488760 61488894 -88028143 - L1M5 LINE L1 -1679 4467 4323 6 1054 309 289 62 0 chr6 61488913 61489041 -88027996 - L1M5 LINE L1 -1902 4244 4109 6 1054 268 284 37 11 chr6 61489380 61489506 -88027531 - L1M5 LINE L1 -3368 2778 2647 6 1054 409 329 62 47 chr6 61489638 61489976 -88027061 - L1MD LINE L1 -3673 2473 2131 6 1054 517 372 110 45 chr6 61490312 61490774 -88026263 - LTR33B LTR ERVL -3 500 9 6 1054 29 0 0 0 chr6 61491047 61491076 -88025961 + AT_rich Low_complexity Low_complexity 1 29 0 6 1054 485 317 43 94 chr6 61491758 61492057 -88024980 + MTE2b LTR MaLR 96 379 0 6 1054 23 0 0 0 chr6 61492146 61492169 -88024868 + AT_rich Low_complexity Low_complexity 1 23 0 6 1054 547 288 57 25 chr6 61492292 61492449 -88024588 + RSINE1 SINE B4 4 165 0 6 1054 25 0 0 0 chr6 61493992 61494017 -88023020 + AT_rich Low_complexity Low_complexity 1 25 0 6 1054 25 51 0 0 chr6 61495044 61495083 -88021954 + AT_rich Low_complexity Low_complexity 1 39 0 6 1054 32 0 0 0 chr6 61495376 61495408 -88021629 + AT_rich Low_complexity Low_complexity 1 32 0 6 1054 4792 183 50 13 chr6 61495419 61496423 -88020614 - Lx3C LINE L1 -2 6974 5934 6 1054 6637 200 108 72 chr6 61496423 61496913 -88020124 - L1_Mur1 LINE L1 -2480 3397 2888 6 1054 198 0 0 0 chr6 61496913 61496935 -88020102 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 6 1054 6637 200 108 72 chr6 61496935 61497315 -88019722 - L1_Mur1 LINE L1 -2990 2887 2343 6 1054 2309 72 9 21 chr6 61497315 61497643 -88019394 - L1Md_F2 LINE L1 -2 6580 6257 6 1054 6637 200 108 72 chr6 61497643 61497879 -88019158 - L1_Mur1 LINE L1 -3535 2342 2215 6 1054 1123 78 0 0 chr6 61497879 61498020 -88019017 - B1_Mus1 SINE Alu -7 141 1 6 1054 6637 196 72 62 chr6 61498020 61499497 -88017540 - L1_Mur1 LINE L1 -3663 2214 751 6 1054 278 257 0 0 chr6 61499614 61499688 -88017349 - L1_Mur1 LINE L1 -6231 753 680 6 1054 267 383 44 4 chr6 61500474 61500723 -88016314 - L1M1 LINE L1 -433 5867 5609 1 1054 5474 31 0 0 chr6 61501942 61502580 -88014457 + L1Md_T LINE L1 5943 6580 -2 2 1054 234 0 0 0 chr6 61502880 61502906 -88014131 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1054 243 0 0 0 chr6 61502906 61502933 -88014104 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1054 403 321 158 18 chr6 61503032 61503426 -88013611 + LTR40a LTR ERVL 5 452 -13 5 1054 525 32 0 0 chr6 61504653 61504716 -88012321 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 6 1054 1111 68 0 20 chr6 61504778 61504792 -88012245 - B1_Mus1 SINE Alu -1 147 136 7 1054 320 18 52 17 chr6 61504792 61504850 -88012187 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 8 1054 1111 68 0 20 chr6 61504850 61504984 -88012053 - B1_Mus1 SINE Alu -13 135 2 7 1054 707 233 213 0 chr6 61505426 61505683 -88011354 + ORR1D1 LTR MaLR 1 317 -57 9 1054 243 0 0 0 chr6 61505683 61505710 -88011327 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1054 473 258 176 0 chr6 61505710 61505755 -88011282 + ORR1D1 LTR MaLR 318 365 -9 9 1054 1230 266 72 25 chr6 61506284 61506646 -88010391 + MTD LTR MaLR 27 405 -14 1 1054 4132 62 0 50 chr6 61507382 61507958 -88009079 - L1_Mus2 LINE L1 0 6566 6020 1 1054 24 32 0 0 chr6 61510338 61510369 -88006668 + AT_rich Low_complexity Low_complexity 1 31 0 1 1054 2627 151 12 26 chr6 61510668 61511171 -88005866 + L1_Mur2 LINE L1 4240 4735 -1142 1 1054 286 130 0 0 chr6 61511163 61511209 -88005828 + L1_Mur2 LINE L1 4954 4999 -887 1 1054 222 118 0 0 chr6 61511702 61511736 -88005301 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1054 557 280 61 39 chr6 61512078 61512299 -88004738 - MTE2a LTR MaLR 0 379 127 1 1054 444 328 50 0 chr6 61512546 61512726 -88004311 + RMER15 LTR ERVL 365 553 -22 1 1054 21 71 0 0 chr6 61513004 61513046 -88003991 + AT_rich Low_complexity Low_complexity 1 42 0 1 1054 759 273 23 6 chr6 61513432 61513609 -88003428 - B3 SINE B2 -28 188 9 1 1054 363 73 0 0 chr6 61514077 61514132 -88002905 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2 1054 1768 209 74 3 chr6 61514133 61514512 -88002525 - Lx4B LINE L1 -19 7039 6634 2 1054 960 153 0 0 chr6 61514510 61514654 -88002383 + Lx2B LINE L1 6197 6340 -660 2 1054 545 77 11 11 chr6 61514676 61514768 -88002269 - L1_Mus3 LINE L1 -12 6626 6535 2 1054 3514 169 50 8 chr6 61514753 61515395 -88001642 + Lx2B LINE L1 6324 6992 -8 2 1054 4823 166 45 3 chr6 61515402 61516473 -88000564 + Lx4B LINE L1 4982 6103 -955 2 1054 1363 62 0 35 chr6 61516473 61516672 -88000365 + L1_Mus1 LINE L1 6376 6567 0 2 1054 3938 202 31 10 chr6 61516672 61516979 -88000058 + Lx4B LINE L1 6104 6419 -639 2 1054 533 224 17 8 chr6 61516980 61517097 -87999940 + RLTR16 LTR ERVK 1 118 -387 2 1054 653 258 75 15 chr6 61517094 61517295 -87999742 + MTD LTR MaLR 207 419 0 2 1054 187 289 67 52 chr6 61518409 61518544 -87998493 - L2b LINE L2 -293 3082 2946 2 1054 441 50 0 0 chr6 61518683 61518743 -87998294 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1054 306 0 0 0 chr6 61518743 61518776 -87998261 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1054 369 0 0 0 chr6 61518776 61518816 -87998221 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1054 360 85 0 0 chr6 61518915 61518974 -87998063 - L1_Mus3 LINE L1 -6 6632 6574 3 1054 40 37 0 0 chr6 61519206 61519260 -87997777 + AT_rich Low_complexity Low_complexity 1 54 0 3 1054 563 318 88 21 chr6 61519640 61520047 -87996990 - MER34A1 LTR ERV1 -16 571 117 3 1054 233 269 28 35 chr6 61520931 61521031 -87996006 + MIR SINE MIR 49 149 -119 3 1054 385 268 0 0 chr6 61522405 61522487 -87994550 - B3 SINE B2 -27 189 108 3 1054 180 0 0 0 chr6 61525163 61525183 -87991854 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1054 939 26 0 0 chr6 61526444 61526558 -87990479 + (CA)n Simple_repeat Simple_repeat 1 114 0 3 1054 327 325 124 76 chr6 61526798 61526851 -87990186 - MLT1F1 LTR MaLR -48 521 458 3 1054 7480 35 1 0 chr6 61526851 61527742 -87989295 + L1Md_T LINE L1 5691 6582 0 4 1054 327 325 124 76 chr6 61527742 61527938 -87989099 - MLT1F1 LTR MaLR -112 457 260 3 1054 333 258 34 0 chr6 61528112 61528201 -87988836 - MLT1F1-int LTR MaLR -385 1104 1013 3 1054 284 301 58 0 chr6 61528368 61528471 -87988566 - Lx9 LINE L1 -178 7466 7358 4 1054 2857 170 27 4 chr6 61528490 61528768 -87988269 - RLTR11A2 LTR ERVK -2 525 247 4 1054 1085 140 45 5 chr6 61528768 61528969 -87988068 - Lx2 LINE L1 0 6997 6789 4 1054 2857 170 27 4 chr6 61528969 61529203 -87987834 - RLTR11A2 LTR ERVK -281 246 2 4 1054 901 313 42 16 chr6 61529214 61529594 -87987443 - Lx9 LINE L1 -310 7334 6945 4 1054 2190 202 52 20 chr6 61529598 61530097 -87986940 - ORR1C2-int LTR MaLR -990 519 5 4 1054 337 171 12 62 chr6 61530101 61530182 -87986855 - ORR1C2 LTR MaLR 0 384 308 4 1054 1041 325 37 7 chr6 61530217 61530626 -87986411 - Lx9 LINE L1 -888 6756 6336 4 1054 2121 92 3 0 chr6 61530626 61530919 -87986118 + L1_Mus4 LINE L1 6342 6635 -1 4 1054 842 94 133 0 chr6 61531013 61531141 -87985896 + B1_Mus1 SINE Alu 2 146 -2 4 1054 306 0 0 0 chr6 61531179 61531213 -87985824 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1054 240 193 0 17 chr6 61531372 61531430 -87985607 - Lx9 LINE L1 -1400 6244 6188 4 1054 6901 68 6 1 chr6 61532112 61533009 -87984028 - L1_Mus1 LINE L1 0 6567 5667 4 1054 475 331 91 41 chr6 61533079 61533397 -87983640 - MLT1F1-int LTR MaLR -556 933 600 3 1054 377 129 0 14 chr6 61535223 61535294 -87981743 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1054 351 301 27 89 chr6 61535796 61535942 -87981095 - ORR1C1 LTR MaLR -241 137 1 5 1054 198 103 0 0 chr6 61536746 61536775 -87980262 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1054 384 22 0 0 chr6 61536823 61536868 -87980169 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 5 1054 222 37 0 0 chr6 61537334 61537361 -87979676 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1054 263 359 0 11 chr6 61537707 61537800 -87979237 + C-rich Low_complexity Low_complexity 1 92 0 5 1054 24 32 0 0 chr6 61538448 61538479 -87978558 + AT_rich Low_complexity Low_complexity 1 31 0 5 1054 311 304 205 46 chr6 61539549 61539743 -87977294 - L1MEg LINE L1 -4546 1538 1344 5 1054 216 0 0 0 chr6 61539743 61539767 -87977270 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1054 311 304 205 46 chr6 61539767 61539879 -87977158 - L1MEg LINE L1 -4741 1343 1184 5 1054 523 281 61 11 chr6 61539938 61540118 -87976919 + Lx8 LINE L1 6097 6285 -1188 5 1054 253 242 0 0 chr6 61540314 61540376 -87976661 - L1MEg LINE L1 -5319 765 704 5 1054 6313 58 2 4 chr6 61540741 61541542 -87975495 - L1Md_F2 LINE L1 0 6582 5783 5 1054 1490 6 0 37 chr6 61541538 61541725 -87975312 - L1Md_A LINE L1 0 6582 6403 6 1054 2698 3 0 0 chr6 61541725 61542023 -87975014 + L1Md_A LINE L1 6053 6350 -232 6 1054 4609 44 7 2 chr6 61542021 61542590 -87974447 - L1_Mm LINE L1 -82 5801 5230 6 1054 234 331 106 41 chr6 61542589 61542712 -87974325 - L1MEg LINE L1 -5847 237 107 5 1054 283 0 47 23 chr6 61543588 61543631 -87973406 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1054 198 143 0 0 chr6 61544872 61544907 -87972130 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1054 1775 242 24 72 chr6 61546295 61546750 -87970287 - Lx6 LINE L1 -4 7456 7024 6 1054 217 154 0 0 chr6 61547290 61547329 -87969708 + B3 SINE B2 34 72 -144 6 1054 36 0 0 0 chr6 61547347 61547383 -87969654 + AT_rich Low_complexity Low_complexity 1 36 0 6 1054 336 256 38 53 chr6 61547513 61547645 -87969392 - Lx7 LINE L1 -332 7364 7235 6 1054 306 0 0 0 chr6 61547676 61547710 -87969327 + (CATA)n Simple_repeat Simple_repeat 2 35 0 6 1054 387 214 27 0 chr6 61547794 61547906 -87969131 + Lx7 LINE L1 7582 7696 0 6 1054 297 292 22 0 chr6 61548016 61548105 -87968932 - ID_B1 SINE B4 -1 223 133 7 1054 416 111 0 14 chr6 61548283 61548356 -87968681 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1054 413 366 32 60 chr6 61548359 61548641 -87968396 - B4A SINE B4 -17 275 2 7 1054 21 0 0 0 chr6 61549288 61549309 -87967728 + AT_rich Low_complexity Low_complexity 1 21 0 7 1054 1286 252 87 15 chr6 61549754 61550145 -87966892 - MTD LTR MaLR 0 419 1 7 1054 778 328 14 63 chr6 61550538 61550824 -87966213 - MTE-int LTR MaLR -1131 449 178 7 1054 4597 217 87 9 chr6 61550842 61551892 -87965145 - Lx5 LINE L1 -1 7049 5918 7 1054 383 288 9 9 chr6 61551896 61552001 -87965036 - MTE-int LTR MaLR -1407 173 69 7 1054 625 318 68 40 chr6 61552003 61552255 -87964782 - MTE2b LTR MaLR -120 259 1 7 1054 288 0 0 0 chr6 61554760 61554792 -87962245 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1054 24 53 0 0 chr6 61554828 61554866 -87962171 + AT_rich Low_complexity Low_complexity 1 38 0 7 1054 740 193 257 0 chr6 61555687 61555858 -87961179 + B3 SINE B2 2 216 0 8 1054 453 272 26 0 chr6 61555920 61556034 -87961003 + MTC LTR MaLR 297 413 -8 8 1054 2022 82 49 0 chr6 61556864 61557169 -87959868 - L1_Mus3 LINE L1 -3 6635 6316 8 1054 5006 112 8 1 chr6 61557216 61557937 -87959100 - Lx3_Mus LINE L1 0 7009 6284 8 1054 1817 126 0 0 chr6 61557937 61558200 -87958837 - Lx3_Mus LINE L1 -389 6620 6358 8 1054 4709 108 20 51 chr6 61558201 61558962 -87958075 + Lx3_Mus LINE L1 5670 6406 -603 8 1054 339 184 0 0 chr6 61559158 61559245 -87957792 + GA-rich Low_complexity Low_complexity 2 88 0 8 1054 964 287 75 48 chr6 61559279 61559796 -87957241 + RCHARR1 DNA MER1_type 443 973 -1 8 1054 36 70 0 0 chr6 61561258 61561329 -87955708 + AT_rich Low_complexity Low_complexity 1 71 0 8 1054 1456 280 27 35 chr6 61561356 61561723 -87955314 + MTE2b LTR MaLR 3 366 -13 8 1054 254 354 90 59 chr6 61563406 61563628 -87953409 - ORR1D2 LTR MaLR -100 270 42 8 1054 527 306 94 4 chr6 61563697 61563963 -87953074 + L1MA6 LINE L1 5796 6085 -215 9 1054 195 42 0 0 chr6 61564885 61564909 -87952128 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 9 1054 936 317 57 0 chr6 61566202 61566502 -87950535 + MLT1A0 LTR MaLR 31 347 -18 9 1054 497 339 64 6 chr6 61566850 61567022 -87950015 - MTEa LTR MaLR -1 378 197 9 1054 689 152 0 6 chr6 61567065 61567237 -87949800 + CT-rich Low_complexity Low_complexity 2 172 0 9 1054 301 391 86 0 chr6 61567240 61567391 -87949646 - MTEa LTR MaLR -203 176 13 9 1054 315 385 56 33 chr6 61567638 61567853 -87949184 + L2 LINE L2 512 731 -2688 9 1054 922 150 0 7 chr6 61570223 61570371 -87946666 - B1_Mus1 SINE Alu 0 148 2 9 1054 320 339 94 0 chr6 61571520 61571700 -87945337 - Lx8 LINE L1 -450 7023 6827 9 1054 1264 314 84 22 chr6 61571745 61572328 -87944709 - Lx8 LINE L1 -728 6745 6127 9 1054 695 338 65 17 chr6 61572355 61572710 -87944327 + Lx8 LINE L1 7074 7445 -28 9 1054 1209 134 37 0 chr6 61573131 61573318 -87943719 - B2_Mm2 SINE B2 0 195 2 9 1054 23 0 0 0 chr6 61574274 61574297 -87942740 + AT_rich Low_complexity Low_complexity 1 23 0 1 1054 369 0 0 0 chr6 61574495 61574536 -87942501 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1 1054 3647 273 32 28 chr6 61575401 61576390 -87940647 - Lx5 LINE L1 -5 7045 6053 1 1054 274 312 68 51 chr6 61577178 61577414 -87939623 - L1MD3 LINE L1 -1026 6969 6730 1 1054 326 384 0 0 chr6 61578076 61578162 -87938875 - PB1D10 SINE Alu -31 86 1 1 1054 540 329 58 13 chr6 61582129 61582354 -87934683 + MTD LTR MaLR 52 286 -133 1 1054 6878 50 2 2 chr6 61582495 61583355 -87933682 - L1Md_F2 LINE L1 0 6582 5723 1 1054 423 222 97 14 chr6 61583598 61583765 -87933272 + MTD LTR MaLR 209 419 0 1 1054 3907 190 82 100 chr6 61584150 61584273 -87932764 - RLTR25A LTR ERVK 0 1103 976 1 1054 195 69 0 0 chr6 61584273 61584302 -87932735 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1054 3907 190 82 100 chr6 61584302 61584413 -87932624 - RLTR25A LTR ERVK -128 975 895 1 1054 285 29 0 0 chr6 61584413 61584447 -87932590 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1054 3907 190 82 100 chr6 61584447 61584808 -87932229 - RLTR25A LTR ERVK -209 894 502 1 1054 210 37 0 0 chr6 61584808 61584835 -87932202 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1054 3907 190 82 100 chr6 61584835 61585360 -87931677 - RLTR25A LTR ERVK -602 501 2 1 1054 3027 301 62 25 chr6 61586790 61587881 -87929156 + Lx8 LINE L1 6178 7309 -164 1 1054 1352 0 0 0 chr6 61589735 61589894 -87927143 + L1Md_T LINE L1 6424 6582 0 1 1054 21 82 0 0 chr6 61590368 61590417 -87926620 + AT_rich Low_complexity Low_complexity 1 49 0 1 1054 1351 211 26 23 chr6 61590648 61590958 -87926079 + Lx5 LINE L1 6731 7041 -9 1 1054 529 348 34 29 chr6 61590958 61591165 -87925872 + B4 SINE B4 81 288 -4 1 1054 387 41 0 0 chr6 61591188 61591237 -87925800 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1054 450 0 0 0 chr6 61591971 61592021 -87925016 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1054 896 201 11 6 chr6 61592777 61592957 -87924080 + URR1A DNA MER1_type 46 226 0 1 1054 287 320 20 10 chr6 61593052 61593150 -87923887 - MER5A1 DNA MER1_type -5 161 63 1 1054 559 278 8 0 chr6 61593627 61593753 -87923284 - B1_Mus1 SINE Alu -10 138 12 1 1054 225 0 0 0 chr6 61594504 61594529 -87922508 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1054 195 42 0 0 chr6 61594947 61594971 -87922066 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1054 184 300 14 41 chr6 61594986 61595059 -87921978 - L2a LINE L2 -162 3264 3194 1 1054 578 217 77 24 chr6 61595453 61595623 -87921414 + Lx7 LINE L1 7518 7696 0 1 1054 236 154 0 19 chr6 61595843 61595896 -87921141 + G-rich Low_complexity Low_complexity 2 53 0 1 1054 352 304 60 9 chr6 61596887 61597003 -87920034 - MLT1A1 LTR MaLR -264 144 23 1 1054 594 345 46 46 chr6 61597574 61597878 -87919159 - MER68 LTR ERVL -245 318 15 1 1054 331 233 14 0 chr6 61597860 61597933 -87919104 - MLT1B LTR MaLR -12 378 305 1 1054 235 246 40 68 chr6 61600207 61600281 -87916756 + MLT1A LTR MaLR 3 74 -300 1 1054 25 65 0 0 chr6 61602667 61602713 -87914324 + AT_rich Low_complexity Low_complexity 1 46 0 1 1054 31 0 0 0 chr6 61602848 61602879 -87914158 + AT_rich Low_complexity Low_complexity 1 31 0 1 1054 186 43 0 0 chr6 61603159 61603182 -87913855 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1054 207 0 0 0 chr6 61603219 61603242 -87913795 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1054 264 319 42 43 chr6 61603285 61603463 -87913574 - MIRc SINE MIR -85 177 1 1 1055 2624 88 67 3 chr6 61605336 61605710 -87911327 - MTB LTR MaLR 0 400 3 1 1055 29 47 0 0 chr6 61605810 61605853 -87911184 + AT_rich Low_complexity Low_complexity 1 43 0 1 1055 1940 234 42 88 chr6 61605911 61606031 -87911006 - RLTR20A LTR ERVK 0 541 437 1 1055 405 0 0 0 chr6 61606031 61606076 -87910961 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1055 324 0 0 0 chr6 61606076 61606111 -87910926 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1055 1940 234 42 88 chr6 61606111 61606556 -87910481 - RLTR20A LTR ERVK -105 436 2 1 1055 195 114 0 0 chr6 61606647 61606682 -87910355 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1055 2107 221 44 30 chr6 61606895 61607370 -87909667 - Lx6 LINE L1 -210 7250 6769 1 1055 261 0 0 0 chr6 61607571 61607600 -87909437 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1055 1168 234 98 11 chr6 61608817 61609257 -87907780 - Lx2B LINE L1 -13 6987 6463 1 1055 29 0 0 0 chr6 61610009 61610038 -87906999 + AT_rich Low_complexity Low_complexity 1 29 0 1 1055 1500 268 60 19 chr6 61610049 61610562 -87906475 + RMER5 LTR ERV1 1 534 0 1 1055 492 18 0 0 chr6 61611114 61611171 -87905866 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1055 21 0 0 0 chr6 61611366 61611387 -87905650 + AT_rich Low_complexity Low_complexity 1 21 0 1 1055 3677 166 29 25 chr6 61611930 61612678 -87904359 - RMER6A LTR ERVK -5 751 1 1 1055 201 147 0 0 chr6 61613047 61613081 -87903956 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1 1055 286 287 65 22 chr6 61613083 61613222 -87903815 - Lx7 LINE L1 -17 7679 7535 1 1055 424 299 44 33 chr6 61613341 61613358 -87903679 - Lx7 LINE L1 -391 7305 7290 1 1055 320 41 41 0 chr6 61613358 61613407 -87903630 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1055 424 299 44 33 chr6 61613407 61613569 -87903468 - Lx7 LINE L1 -407 7289 7124 1 1055 2206 200 69 40 chr6 61614111 61614616 -87902421 + RMER5 LTR ERV1 1 520 -14 1 1055 232 308 33 0 chr6 61614644 61614735 -87902302 - ORR1D1 LTR MaLR 0 374 281 1 1055 276 321 37 9 chr6 61615136 61615243 -87901794 - MER63D DNA AcHobo -668 393 284 1 1055 455 0 18 0 chr6 61615983 61616038 -87900999 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1055 24 67 0 0 chr6 61616151 61616196 -87900841 + AT_rich Low_complexity Low_complexity 1 45 0 1 1055 288 0 0 0 chr6 61616196 61616228 -87900809 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1055 311 294 31 52 chr6 61616770 61616867 -87900170 + B4A SINE B4 3 97 -195 1 1055 278 230 22 54 chr6 61617006 61617098 -87899939 + MTC LTR MaLR 333 421 0 1 1055 195 345 56 22 chr6 61617472 61617561 -87899476 - L2c LINE L2 -20 3367 3276 1 1055 354 45 0 0 chr6 61617915 61617959 -87899078 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 1 1055 1312 91 21 16 chr6 61620162 61620351 -87896686 - B2_Mm2 SINE B2 -4 191 2 1 1055 2750 195 35 2 chr6 61620483 61620996 -87896041 - Lx5 LINE L1 -195 6855 6326 1 1055 875 196 94 14 chr6 61620987 61621199 -87895838 + Lx5 LINE L1 6819 7047 -3 1 1055 1068 331 97 62 chr6 61622016 61622949 -87894088 + MLT1F2-int LTR MaLR 86 1087 -402 1 1055 5694 166 21 7 chr6 61622964 61623929 -87893108 - Lx4A LINE L1 0 7058 6081 1 1055 684 147 0 0 chr6 61623931 61624047 -87892990 + L1_Mur2 LINE L1 4264 4379 -1498 1 1055 23 68 0 0 chr6 61624311 61624355 -87892682 + AT_rich Low_complexity Low_complexity 1 44 0 1 1055 1277 119 36 0 chr6 61624413 61624607 -87892430 + L1_Mur2 LINE L1 4344 4544 -1333 1 1055 260 342 158 26 chr6 61624691 61624925 -87892112 + MLT1F2-int LTR MaLR 1216 1480 -9 1 1055 2278 122 18 62 chr6 61624925 61625326 -87891711 - RLTR9A2 LTR ERVK 0 383 1 1 1055 377 330 17 0 chr6 61625371 61625486 -87891551 + MLT1F2 LTR MaLR 76 192 -368 1 1055 2499 133 12 9 chr6 61625709 61626133 -87890904 - L1Md_F3 LINE L1 -14 6570 6146 1 1055 180 0 0 0 chr6 61626135 61626155 -87890882 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1055 936 252 19 8 chr6 61626224 61626484 -87890553 - Lx9 LINE L1 -1676 5968 5706 1 1055 1042 223 113 37 chr6 61626479 61626688 -87890349 + Lx9 LINE L1 7264 7481 -163 1 1055 207 0 0 0 chr6 61626688 61626711 -87890326 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1055 1042 223 113 37 chr6 61626711 61626855 -87890182 + Lx9 LINE L1 7482 7643 -1 1 1055 329 203 0 0 chr6 61627650 61627709 -87889328 - Lx9 LINE L1 -448 7196 7138 1 1055 21 82 0 0 chr6 61627920 61627969 -87889068 + AT_rich Low_complexity Low_complexity 1 49 0 1 1055 217 324 26 26 chr6 61629695 61629771 -87887266 - B1_Mus1 SINE Alu -45 103 28 1 1055 207 204 0 0 chr6 61629954 61629998 -87887039 + (CATATA)n Simple_repeat Simple_repeat 6 49 0 1 1055 450 0 0 0 chr6 61631799 61631849 -87885188 + (CATA)n Simple_repeat Simple_repeat 2 51 0 1 1055 555 43 0 0 chr6 61633023 61633093 -87883944 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1055 783 271 54 5 chr6 61633144 61633348 -87883689 + B3 SINE B2 3 216 0 1 1055 193 230 27 0 chr6 61633598 61633672 -87883365 + (CAT)n Simple_repeat Simple_repeat 3 78 0 1 1055 976 245 21 103 chr6 61634072 61634490 -87882547 - Lx9 LINE L1 -2 7642 7259 1 1055 557 50 19 29 chr6 61634548 61634652 -87882385 - L1Md_F2 LINE L1 -8 6574 6472 1 1055 7215 48 42 1 chr6 61635455 61637125 -87879912 - L1Md_F3 LINE L1 -14 6570 4833 1 1055 3569 73 15 2 chr6 61638186 61638655 -87878382 - MT2C_Mm LTR ERVL 0 475 1 1 1055 1240 130 0 49 chr6 61639037 61639263 -87877774 - Lx3B LINE L1 -7 6966 6752 1 1055 1289 237 35 20 chr6 61639867 61640211 -87876826 - RLTR15 LTR ERVK -9 350 2 1 1055 4289 218 47 41 chr6 61640213 61641005 -87876032 - MYSERV6-int LTR ERVK -2 8957 8174 1 1055 654 13 0 0 chr6 61641005 61641080 -87875957 + (TCTA)n Simple_repeat Simple_repeat 1 75 0 1 1055 4289 218 47 41 chr6 61641080 61641459 -87875578 - MYSERV6-int LTR ERVK -786 8173 7780 1 1055 316 339 59 32 chr6 61641461 61641647 -87875390 - RMER4A LTR ERVK -19 447 257 1 1055 1456 286 51 100 chr6 61641656 61642824 -87874213 - MYSERV6-int LTR ERVK -1423 5127 4091 1 1055 740 199 45 32 chr6 61642949 61643105 -87873932 - MYSERV6-int LTR ERVK -7529 1430 1273 1 1055 414 0 0 0 chr6 61643178 61643224 -87873813 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1 1055 956 314 18 12 chr6 61643361 61643699 -87873338 - MYSERV6-int LTR ERVK -7844 1115 776 1 1055 24 32 0 0 chr6 61644086 61644117 -87872920 + AT_rich Low_complexity Low_complexity 1 31 0 1 1055 244 218 54 9 chr6 61644636 61644747 -87872290 + (TA)n Simple_repeat Simple_repeat 1 116 0 1 1055 426 39 0 0 chr6 61644918 61644970 -87872067 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1055 5686 67 16 7 chr6 61645072 61645833 -87871204 - L1_Mus1 LINE L1 -12 6555 5788 1 1055 351 113 0 0 chr6 61645870 61645923 -87871114 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1055 269 298 19 142 chr6 61646092 61646459 -87870578 + L1MCb LINE L1 39 360 -5685 1 1055 1688 215 150 28 chr6 61646853 61647346 -87869691 - RLTR31_Mur LTR ERVK 0 553 1 1 1055 2978 131 13 2 chr6 61647798 61648272 -87868765 - Lx2A1 LINE L1 -291 5586 5108 1 1055 1602 70 21 46 chr6 61648274 61648515 -87868522 + Lx2A1 LINE L1 5611 5845 -1163 1 1055 3251 156 74 0 chr6 61648515 61649097 -87867940 + Lx2 LINE L1 6371 6995 -2 2 1055 608 291 11 22 chr6 61649097 61649123 -87867914 + L1ME3B LINE L1 5878 5903 -337 2 1055 239 188 20 20 chr6 61649448 61649497 -87867540 + B1F SINE Alu 15 63 -86 2 1055 11272 67 7 1 chr6 61650094 61651572 -87865465 + L1Md_F2 LINE L1 4099 5586 -297 2 1055 8160 39 8 2 chr6 61651572 61652562 -87864475 + L1Md_F2 LINE L1 5587 6582 0 2 1055 241 191 0 0 chr6 61652577 61652619 -87864418 + T-rich Low_complexity Low_complexity 1 42 0 2 1055 270 0 0 0 chr6 61652871 61652901 -87864136 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1055 4079 42 10 2 chr6 61654578 61655079 -87861958 + L1Md_F3 LINE L1 6080 6584 0 2 1055 225 341 112 37 chr6 61655412 61655546 -87861491 - MLT1C LTR MaLR -26 441 298 2 1055 281 162 15 0 chr6 61655554 61655622 -87861415 + (CAT)n Simple_repeat Simple_repeat 3 71 0 2 1055 350 254 117 17 chr6 61655952 61656072 -87860965 + MLT1A1 LTR MaLR 277 408 0 2 1055 240 35 0 0 chr6 61656864 61656893 -87860144 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1055 660 326 91 55 chr6 61657584 61658022 -87859015 - MER74C LTR ERVL -6 454 1 2 1055 335 315 151 10 chr6 61658200 61658399 -87858638 - RMER5 LTR ERV1 -88 446 220 2 1055 293 281 107 23 chr6 61658420 61658551 -87858486 - RMER5 LTR ERV1 -374 160 19 2 1055 248 0 31 0 chr6 61659314 61659346 -87857691 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 2 1055 1064 56 7 0 chr6 61659362 61659504 -87857533 - B1_Mus1 SINE Alu 0 148 6 2 1055 22 0 0 0 chr6 61659993 61660015 -87857022 + AT_rich Low_complexity Low_complexity 1 22 0 2 1055 26 0 0 0 chr6 61660650 61660676 -87856361 + AT_rich Low_complexity Low_complexity 1 26 0 2 1055 197 33 33 0 chr6 61660882 61660912 -87856125 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 2 1055 336 133 0 0 chr6 61661810 61661870 -87855167 + (TAA)n Simple_repeat Simple_repeat 3 62 0 2 1055 792 223 117 19 chr6 61661942 61662148 -87854889 - URR1A DNA MER1_type 0 226 1 2 1055 3404 135 31 31 chr6 61662201 61662752 -87854285 - Lx LINE L1 -6 6648 6097 2 1055 2964 84 5 2 chr6 61662752 61663147 -87853890 - MTA_Mm LTR MaLR 0 396 1 2 1055 3404 135 31 31 chr6 61663147 61663182 -87853855 - Lx LINE L1 -558 6096 6062 2 1055 4544 94 8 23 chr6 61663707 61664424 -87852613 + L1_Mus3 LINE L1 5984 6638 0 2 1055 1288 274 91 13 chr6 61665310 61665695 -87851342 + MTD LTR MaLR 1 415 -4 2 1055 211 377 0 0 chr6 61665900 61665969 -87851068 - L2b LINE L2 -15 3360 3292 2 1055 1472 242 13 76 chr6 61666313 61666706 -87850331 + Lx6 LINE L1 6144 6511 -949 2 1055 408 94 0 0 chr6 61666706 61666770 -87850267 + L1_Mus2 LINE L1 6499 6562 -4 2 1055 1708 187 17 60 chr6 61666777 61667130 -87849907 + Lx6 LINE L1 6503 6840 -620 2 1055 445 189 406 12 chr6 61667136 61667308 -87849729 - ORR1B2 LTR MaLR -136 242 3 2 1055 736 151 124 7 chr6 61669385 61669538 -87847499 - URR1A DNA MER1_type 0 226 56 2 1055 680 232 51 19 chr6 61670189 61670347 -87846690 - RMER10B LTR ERVL 0 398 236 2 1055 1271 73 0 11 chr6 61670351 61670532 -87846505 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 2 1055 1112 0 8 0 chr6 61670535 61670663 -87846374 + (GAGAA)n Simple_repeat Simple_repeat 1 129 0 2 1055 294 87 0 0 chr6 61670672 61670718 -87846319 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 2 1055 719 173 8 8 chr6 61670740 61670868 -87846169 - RMER10B LTR ERVL -270 128 1 2 1055 333 370 14 0 chr6 61670962 61671100 -87845937 - B1F SINE Alu -1 148 9 2 1055 4906 77 0 5 chr6 61672050 61672706 -87844331 + L1Md_T LINE L1 5929 6581 -1 2 1055 1459 73 0 10 chr6 61672829 61673023 -87844014 - B2_Mm2 SINE B2 -2 193 2 2 1055 312 263 158 51 chr6 61673080 61673276 -87843761 - MLT1A LTR MaLR -78 296 80 2 1055 286 314 57 8 chr6 61674210 61674332 -87842705 + MLT1A0 LTR MaLR 210 337 -28 2 1055 235 358 37 9 chr6 61674350 61674457 -87842580 - B1F SINE Alu -11 138 29 2 1055 24 91 0 0 chr6 61674694 61674760 -87842277 + AT_rich Low_complexity Low_complexity 1 66 0 2 1055 423 335 85 39 chr6 61676013 61676271 -87840766 - MTEa LTR MaLR 0 379 110 2 1055 228 114 0 0 chr6 61676299 61676334 -87840703 - MTEa LTR MaLR -344 35 1 2 1055 21 36 0 0 chr6 61676683 61676711 -87840326 + AT_rich Low_complexity Low_complexity 1 28 0 2 1055 287 333 207 0 chr6 61676965 61677076 -87839961 + RSINE1 SINE B4 19 152 -13 2 1055 5432 119 14 0 chr6 61677227 61678033 -87839004 + Lx LINE L1 5834 6650 -4 2 1055 21 0 0 0 chr6 61678280 61678301 -87838736 + AT_rich Low_complexity Low_complexity 1 21 0 2 1055 1485 286 86 28 chr6 61680057 61680723 -87836314 + Lx9 LINE L1 6422 7158 -315 2 1055 288 0 0 0 chr6 61680903 61680935 -87836102 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1055 476 111 12 0 chr6 61680935 61681015 -87836022 + (TG)n Simple_repeat Simple_repeat 1 82 0 2 1055 22 0 0 0 chr6 61681137 61681159 -87835878 + AT_rich Low_complexity Low_complexity 1 22 0 2 1055 1026 118 33 8 chr6 61681515 61681691 -87835346 + B2_Mm1t SINE B2 6 187 -6 2 1055 251 28 28 0 chr6 61682963 61682999 -87834038 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1055 762 278 55 159 chr6 61683877 61684279 -87832758 - ORR1C2 LTR MaLR -1 383 24 2 1055 1885 129 25 40 chr6 61684283 61684607 -87832430 - ORR1A2 LTR MaLR -8 319 1 2 1055 248 359 78 0 chr6 61684659 61684826 -87832211 - B3A SINE B2 -17 181 2 2 1055 337 281 0 0 chr6 61684941 61685030 -87832007 + ID_B1 SINE B4 117 205 -19 2 1055 802 182 170 10 chr6 61687196 61687390 -87829647 + URR1B DNA MER1_type 1 225 0 2 1055 689 299 65 0 chr6 61687676 61687860 -87829177 + B3 SINE B2 14 209 -7 2 1055 320 43 0 21 chr6 61689255 61689302 -87827735 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1055 329 309 49 54 chr6 61690028 61690241 -87826796 + MLT1A0 LTR MaLR 158 372 -2 2 1055 483 307 84 7 chr6 61690244 61690398 -87826639 + ORR1E LTR MaLR 1 166 -193 2 1055 405 0 0 0 chr6 61690811 61690856 -87826181 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1055 4079 138 78 3 chr6 61690861 61691549 -87825488 - Lx LINE L1 0 6654 5915 2 1055 4123 156 3 1 chr6 61691553 61692339 -87824698 + Lx2 LINE L1 5165 5951 -1046 2 1055 22 94 0 0 chr6 61692394 61692458 -87824579 + AT_rich Low_complexity Low_complexity 1 64 0 2 1055 3865 115 52 2 chr6 61692737 61693330 -87823707 - L1_Mus3 LINE L1 -6 6632 6010 2 1055 2088 83 92 3 chr6 61693437 61693762 -87823275 - L1_Mus3 LINE L1 -3 6635 6282 2 1055 4807 165 28 48 chr6 61693816 61694784 -87822253 - Lx3B LINE L1 0 6973 6025 2 1055 411 56 0 0 chr6 61694785 61694839 -87822198 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 2 1055 243 0 0 0 chr6 61694840 61694867 -87822170 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 1055 353 96 0 0 chr6 61694867 61694919 -87822118 - B1_Mus2 SINE Alu -19 128 77 2 1055 222 115 19 37 chr6 61695301 61695355 -87821682 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1055 347 379 47 20 chr6 61695475 61695623 -87821414 + RSINE1 SINE B4 13 164 -1 2 1055 250 204 104 28 chr6 61695887 61695993 -87821044 + Lx8 LINE L1 7354 7467 -6 2 1055 277 245 148 30 chr6 61697153 61697254 -87819783 - MTEa LTR MaLR 0 379 267 2 1055 382 279 0 31 chr6 61697306 61697402 -87819635 + ID_B1 SINE B4 86 178 -46 2 1055 201 39 0 0 chr6 61697646 61697672 -87819365 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1055 768 104 0 0 chr6 61697672 61697805 -87819232 + (GA)n Simple_repeat Simple_repeat 1 134 0 2 1055 293 141 76 30 chr6 61697811 61697943 -87819094 + (CAGAGA)n Simple_repeat Simple_repeat 5 142 0 2 1055 1136 210 18 0 chr6 61698206 61698425 -87818612 - URR1B DNA MER1_type 0 225 3 2 1055 486 336 22 40 chr6 61698711 61698937 -87818100 + ID_B1 SINE B4 1 222 -2 2 1055 568 320 62 56 chr6 61699248 61699427 -87817610 + B3A SINE B2 1 180 -18 2 1055 633 61 0 0 chr6 61699428 61699510 -87817527 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 2 1055 1330 193 24 5 chr6 61700485 61700769 -87816268 - RLTR12A LTR ERVK -13 555 244 2 1055 26 0 0 0 chr6 61701566 61701592 -87815445 + AT_rich Low_complexity Low_complexity 1 26 0 2 1055 365 317 77 0 chr6 61701666 61701770 -87815267 - PB1 SINE Alu -7 120 9 2 1055 1216 255 110 5 chr6 61702132 61702506 -87814531 - MTD LTR MaLR -2 417 5 2 1055 34 24 0 0 chr6 61702575 61702616 -87814421 + AT_rich Low_complexity Low_complexity 1 41 0 2 1055 1101 365 77 17 chr6 61702670 61703253 -87813784 - LTR41 LTR ERVL -131 637 20 2 1055 354 173 0 0 chr6 61704524 61704628 -87812409 + T-rich Low_complexity Low_complexity 1 104 0 2 1055 862 57 41 0 chr6 61704631 61704753 -87812284 - B1_Mus2 SINE Alu 0 147 21 2 1055 648 238 65 74 chr6 61706293 61706524 -87810513 + B4 SINE B4 64 292 0 2 1055 481 279 75 11 chr6 61706804 61707035 -87810002 + L1MB8 LINE L1 5610 5851 -327 2 1055 22 35 0 0 chr6 61707077 61707106 -87809931 + AT_rich Low_complexity Low_complexity 1 29 0 2 1055 397 299 77 12 chr6 61707118 61707287 -87809750 - B3A SINE B2 -18 180 1 2 1055 313 342 78 13 chr6 61707308 61707462 -87809575 - RSINE1 SINE B4 0 165 2 2 1055 431 255 83 0 chr6 61707550 61707695 -87809342 + L1MB8 LINE L1 6020 6176 -8 2 1055 22 56 0 0 chr6 61708544 61708580 -87808457 + AT_rich Low_complexity Low_complexity 1 36 0 2 1055 1225 290 73 34 chr6 61708724 61709228 -87807809 - Lx9 LINE L1 -219 7425 6902 2 1055 234 0 0 0 chr6 61709230 61709256 -87807781 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 1055 252 0 0 0 chr6 61709256 61709283 -87807754 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1055 376 322 26 0 chr6 61709285 61709400 -87807637 - RSINE1 SINE B4 -32 133 16 2 1055 273 271 51 0 chr6 61710813 61710931 -87806106 + Lx9 LINE L1 7389 7512 -132 3 1055 540 111 0 0 chr6 61710942 61711023 -87806014 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1055 1043 83 7 0 chr6 61711508 61711653 -87805384 - B1_Mus1 SINE Alu 0 148 3 3 1055 181 281 35 0 chr6 61712031 61712088 -87804949 + L4 LINE RTE 1229 1287 -742 3 1055 998 289 75 37 chr6 61712549 61713013 -87804024 - RMER5 LTR ERV1 -5 529 48 3 1055 636 116 8 24 chr6 61714394 61714518 -87802519 + L1_Mus4 LINE L1 6515 6636 0 3 1055 582 257 40 101 chr6 61720232 61720479 -87796558 - Lx9 LINE L1 -300 7344 7113 3 1055 860 246 45 91 chr6 61720470 61720778 -87796259 + Lx9 LINE L1 6718 7011 -633 3 1055 366 253 0 65 chr6 61722973 61723066 -87793971 - PB1D7 SINE Alu -33 87 1 3 1055 223 214 17 35 chr6 61726511 61726569 -87790468 + PB1D10 SINE Alu 56 112 -5 3 1055 1298 100 10 16 chr6 61726617 61726810 -87790227 + B2_Mm2 SINE B2 1 192 -3 3 1055 346 283 52 13 chr6 61726828 61726982 -87790055 - LTR37A LTR ERV1 -12 414 255 3 1055 714 194 0 0 chr6 61727152 61727385 -87789652 + CT-rich Low_complexity Low_complexity 1 233 0 3 1055 1005 234 15 61 chr6 61727477 61727774 -87789263 - Lx7 LINE L1 -395 7301 7017 3 1055 351 0 0 0 chr6 61727774 61727813 -87789224 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1055 1005 234 15 61 chr6 61727813 61727843 -87789194 - Lx7 LINE L1 -680 7016 6989 3 1055 408 248 33 25 chr6 61727918 61728038 -87788999 + ORR1D1 LTR MaLR 1 121 -253 3 1055 231 204 0 0 chr6 61728476 61728525 -87788512 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1055 4046 22 0 95 chr6 61728742 61729287 -87787750 + MT2_Mm LTR ERVL 1 493 0 3 1055 47333 15 7 0 chr6 61729287 61734610 -87782427 + MERVL-int LTR ERVL 1 5360 -125 3 1055 392 167 46 35 chr6 61734610 61734697 -87782340 + ORR1A3-int LTR MaLR 553 640 -1323 3 1055 314 0 0 0 chr6 61734697 61734735 -87782302 + MERVL-int LTR ERVL 5448 5485 0 3 131 4037 22 0 95 chr6 61734735 61735280 -87781757 + MT2_Mm LTR ERVL 1 493 0 3 1056 23 0 0 0 chr6 61736053 61736076 -87780961 + AT_rich Low_complexity Low_complexity 1 23 0 3 1056 257 0 30 0 chr6 61736151 61736184 -87780853 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1056 23 68 0 0 chr6 61736371 61736415 -87780622 + AT_rich Low_complexity Low_complexity 1 44 0 3 1056 28 29 0 0 chr6 61736500 61736535 -87780502 + AT_rich Low_complexity Low_complexity 1 35 0 3 1056 286 256 380 17 chr6 61737305 61737426 -87779611 - RSINE1 SINE B4 0 165 1 3 1056 216 200 12 24 chr6 61737500 61737582 -87779455 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1056 244 323 98 55 chr6 61737582 61737746 -87779291 - RLTR21 LTR ERVK -319 1253 1083 3 1056 375 202 0 25 chr6 61738401 61738482 -87778555 + Lx9 LINE L1 7396 7474 -170 3 1056 381 117 0 0 chr6 61738482 61738542 -87778495 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1056 27 0 0 0 chr6 61738660 61738687 -87778350 + AT_rich Low_complexity Low_complexity 1 27 0 3 1056 229 313 30 0 chr6 61739755 61739822 -87777215 - ID4_ SINE ID -3 80 12 3 1056 477 311 65 29 chr6 61740933 61741072 -87775965 + RSINE1 SINE B4 2 145 -20 3 1056 239 114 0 22 chr6 61741106 61741151 -87775886 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 3 1056 840 217 165 0 chr6 61741916 61742128 -87774909 - MTD LTR MaLR -14 405 159 3 1056 207 182 0 0 chr6 61743113 61743151 -87773886 + T-rich Low_complexity Low_complexity 18 55 0 3 1056 950 87 71 21 chr6 61743151 61743292 -87773745 - B1_Mus1 SINE Alu 0 148 1 3 1056 207 182 0 0 chr6 61743292 61743308 -87773729 + T-rich Low_complexity Low_complexity 2 17 0 3 1056 9340 89 34 31 chr6 61743313 61744724 -87772313 - Lx3_Mus LINE L1 -8 7001 5587 3 1056 910 68 0 64 chr6 61745448 61745589 -87771448 - L1_Mus2 LINE L1 -1 6565 6434 3 1056 2566 99 31 10 chr6 61745708 61745861 -87771176 - Lx3_Mus LINE L1 -942 6067 5908 3 1056 180 0 0 0 chr6 61745861 61745881 -87771156 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 3 1056 2566 99 31 10 chr6 61745881 61746113 -87770924 - Lx3_Mus LINE L1 -1102 5907 5675 3 1056 380 279 57 0 chr6 61746600 61746722 -87770315 + Tigger5 DNA MER2_type 2278 2406 0 3 1056 369 268 70 38 chr6 61749083 61749269 -87767768 - MER33 DNA MER1_type -110 214 23 3 1056 1373 256 135 17 chr6 61749604 61750025 -87767012 - RMER15 LTR ERVL -83 492 22 3 1056 275 282 11 34 chr6 61750037 61750125 -87766912 - RMER15 LTR ERVL -489 86 1 3 1056 449 316 75 117 chr6 61750214 61750641 -87766396 - MLT1C LTR MaLR 0 467 59 3 1056 1329 280 65 4 chr6 61751606 61752092 -87764945 - Lx5 LINE L1 -49 7411 6486 3 1056 756 50 0 0 chr6 61752109 61752210 -87764827 + (TTCC)n Simple_repeat Simple_repeat 2 102 0 3 1056 718 124 23 0 chr6 61752210 61752339 -87764698 + (TTTTC)n Simple_repeat Simple_repeat 1 132 0 3 1056 49 0 0 0 chr6 61752381 61752430 -87764607 + AT_rich Low_complexity Low_complexity 1 49 0 3 1056 393 333 0 0 chr6 61753906 61754005 -87763032 + ID_B1 SINE B4 87 185 -39 3 1056 405 0 0 0 chr6 61754016 61754061 -87762976 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1056 1291 225 58 0 chr6 61754061 61754337 -87762700 + MTC LTR MaLR 22 313 -108 3 1056 422 251 286 30 chr6 61754368 61754536 -87762501 - B3 SINE B2 -5 211 1 3 1056 36 77 0 0 chr6 61754775 61754853 -87762184 + AT_rich Low_complexity Low_complexity 1 78 0 3 1056 387 0 0 0 chr6 61754978 61755021 -87762016 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1056 324 0 0 0 chr6 61755022 61755058 -87761979 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1056 1386 303 93 40 chr6 61755126 61756091 -87760946 - Lx9 LINE L1 -274 7370 6201 3 1056 316 255 78 30 chr6 61756172 61756338 -87760699 + L1_Rod LINE L1 4269 4442 -1405 3 1056 887 298 10 58 chr6 61756400 61756903 -87760134 - L1_Mur3 LINE L1 -982 4898 4420 3 1056 216 67 0 0 chr6 61757033 61757063 -87759974 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1056 259 167 72 43 chr6 61757063 61757132 -87759905 - L1_Mm LINE L1 -487 5396 5326 3 1056 6697 55 38 2 chr6 61757111 61757981 -87759056 - L1Md_F2 LINE L1 -15 6567 5667 3 1056 569 69 11 0 chr6 61758070 61758157 -87758880 + (TC)n Simple_repeat Simple_repeat 1 88 0 3 1056 297 0 0 0 chr6 61758157 61758190 -87758847 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1056 372 375 9 0 chr6 61758190 61758302 -87758735 - B3 SINE B2 -51 165 53 3 1056 210 174 0 0 chr6 61758393 61758439 -87758598 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1056 24 0 0 0 chr6 61759541 61759565 -87757472 + AT_rich Low_complexity Low_complexity 1 24 0 3 1056 21 71 0 0 chr6 61761655 61761697 -87755340 + AT_rich Low_complexity Low_complexity 1 42 0 3 1056 252 0 0 0 chr6 61764543 61764571 -87752466 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 1056 374 242 169 32 chr6 61766508 61766632 -87750405 - B1F SINE Alu -8 141 1 3 1056 216 91 0 0 chr6 61767154 61767179 -87749858 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 1056 492 117 0 0 chr6 61767179 61767256 -87749781 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1056 216 91 0 0 chr6 61767256 61767263 -87749774 + (TA)n Simple_repeat Simple_repeat 2 8 0 3 1056 288 91 0 0 chr6 61767998 61768042 -87748995 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1056 1307 262 6 26 chr6 61768218 61768570 -87748467 - Lx2B LINE L1 -5 6995 6651 3 1056 1120 96 0 0 chr6 61769112 61769258 -87747779 + B1_Mus1 SINE Alu 3 148 0 3 1056 21 89 0 0 chr6 61769404 61769460 -87747577 + AT_rich Low_complexity Low_complexity 1 56 0 3 1056 22 35 0 0 chr6 61770545 61770574 -87746463 + AT_rich Low_complexity Low_complexity 1 29 0 3 1056 3281 241 57 59 chr6 61770949 61771199 -87745838 - Lx2B LINE L1 -2 6998 6720 3 1056 1214 48 0 0 chr6 61771199 61771346 -87745691 + B1_Mm SINE Alu 1 147 0 3 1056 3281 241 57 59 chr6 61771346 61772169 -87744868 - Lx2B LINE L1 -281 6719 5927 3 1056 533 244 23 119 chr6 61773233 61773452 -87743585 - L1_Mur3 LINE L1 -7196 516 319 3 1056 402 261 8 75 chr6 61773462 61773582 -87743455 + PB1D10 SINE Alu 5 116 -1 3 1056 949 269 86 18 chr6 61773770 61774050 -87742987 - L1_Mur3 LINE L1 -7138 574 276 3 1056 1001 39 0 0 chr6 61775078 61775206 -87741831 + B1_Mus2 SINE Alu 10 137 -10 3 1056 321 169 0 0 chr6 61776324 61776383 -87740654 + T-rich Low_complexity Low_complexity 1 59 0 3 1056 1184 55 0 0 chr6 61776384 61776530 -87740507 - B1_Mus1 SINE Alu -1 147 2 3 1056 231 262 0 0 chr6 61778051 61778093 -87738944 - L1M4b LINE L1 -7256 78 37 3 1056 349 362 59 0 chr6 61778337 61778489 -87738548 + MER20 DNA MER1_type 2 162 -57 3 1056 240 111 0 0 chr6 61778830 61778866 -87738171 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 3 1056 858 355 52 38 chr6 61779134 61779967 -87737070 - MTE-int LTR MaLR -34 1546 665 3 1056 32 0 0 0 chr6 61780303 61780335 -87736702 + AT_rich Low_complexity Low_complexity 1 32 0 3 1056 435 234 214 12 chr6 61780420 61780593 -87736444 + B3 SINE B2 3 210 -6 3 1056 502 301 14 7 chr6 61780616 61780760 -87736277 + B1_Mur1 SINE Alu 3 147 -2 3 1056 521 339 91 42 chr6 61781021 61781286 -87735751 - B4A SINE B4 -9 283 6 3 1056 614 198 51 35 chr6 61781598 61781746 -87735291 - MTD LTR MaLR -274 145 3 3 1056 594 39 0 0 chr6 61782410 61782487 -87734550 + B1_Mm SINE Alu 71 147 0 3 1056 244 296 58 90 chr6 61784900 61785056 -87731981 + MLT1B LTR MaLR 1 151 -223 3 1056 23 0 0 0 chr6 61786062 61786085 -87730952 + AT_rich Low_complexity Low_complexity 1 23 0 3 1056 1044 35 0 21 chr6 61788263 61788407 -87728630 + (TTTTC)n Simple_repeat Simple_repeat 3 143 0 3 1056 1057 143 0 0 chr6 61788408 61788576 -87728461 - B2_Mm2 SINE B2 -27 168 1 3 1056 340 359 138 5 chr6 61788577 61788787 -87728250 + MLT1B LTR MaLR 153 390 0 3 1056 307 341 120 42 chr6 61789549 61789766 -87727271 + L1M4 LINE L1 666 899 -6005 3 1056 350 371 71 59 chr6 61789845 61790100 -87726937 - B4 SINE B4 -11 281 24 3 1056 432 367 40 68 chr6 61790173 61790524 -87726513 + L1M4 LINE L1 955 1295 -5609 3 1056 359 300 115 31 chr6 61790758 61791214 -87725823 + L1M4 LINE L1 1913 2452 -4882 3 1056 842 289 94 19 chr6 61791376 61791846 -87725191 + L1M4 LINE L1 5417 5921 -1085 3 1056 707 192 0 0 chr6 61792222 61792342 -87724695 + B3 SINE B2 1 120 -96 4 1056 396 43 0 0 chr6 61792501 61792547 -87724490 - L1Md_F2 LINE L1 -236 6346 6301 4 1056 1794 36 9 0 chr6 61792548 61792768 -87724269 + L1Md_F2 LINE L1 6358 6579 -3 4 1056 1117 177 19 5 chr6 61793044 61793254 -87723783 + Lx2 LINE L1 6783 6995 -2 4 1056 1406 295 41 25 chr6 61793475 61793962 -87723075 - RLTR11A2 LTR ERVK -29 498 4 4 1056 320 291 215 3 chr6 61794272 61794630 -87722407 + L1M3 LINE L1 3047 3480 -2660 4 1056 362 366 117 38 chr6 61796289 61796553 -87720484 + LTR16C LTR ERVL 147 431 -58 4 1056 301 127 0 41 chr6 61796741 61796798 -87720239 - Lx5 LINE L1 -232 6826 6749 4 1056 657 127 0 0 chr6 61796851 61796985 -87720052 + (TC)n Simple_repeat Simple_repeat 2 135 0 4 1056 225 0 0 0 chr6 61796985 61797010 -87720027 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1056 1098 68 7 14 chr6 61797771 61797909 -87719128 + B1_Mus1 SINE Alu 2 140 -8 4 1056 285 100 0 0 chr6 61797909 61797959 -87719078 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 4 1056 951 204 181 29 chr6 61798071 61798348 -87718689 - ORR1C1 LTR MaLR -46 332 2 4 1056 1753 207 76 30 chr6 61799563 61799602 -87717435 + MTC LTR MaLR 1 41 -380 4 1056 2692 27 2 169 chr6 61799602 61800040 -87716997 - RLTR10B2 LTR ERVK 0 365 1 4 1056 1753 207 76 30 chr6 61800040 61800394 -87716643 + MTC LTR MaLR 42 412 -9 4 1056 387 60 0 0 chr6 61800703 61800753 -87716284 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1056 540 0 0 0 chr6 61800753 61800812 -87716225 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1056 219 288 96 36 chr6 61801172 61801255 -87715782 + B1F SINE Alu 17 104 -45 4 1056 23 54 0 0 chr6 61801398 61801435 -87715602 + AT_rich Low_complexity Low_complexity 1 37 0 4 1056 51 17 0 0 chr6 61802231 61802289 -87714748 + AT_rich Low_complexity Low_complexity 1 58 0 4 1056 21 57 0 0 chr6 61802583 61802618 -87714419 + AT_rich Low_complexity Low_complexity 1 35 0 4 1056 1077 189 158 30 chr6 61803274 61803670 -87713367 - RMER17C LTR ERVK -519 439 16 4 1056 1000 310 9 67 chr6 61803744 61804086 -87712951 - MTE2a LTR MaLR 0 379 58 4 1056 566 300 101 53 chr6 61804268 61804645 -87712392 + RMER5 LTR ERV1 60 454 -80 4 1056 382 340 6 13 chr6 61805640 61805798 -87711239 + CT-rich Low_complexity Low_complexity 2 158 0 4 1056 666 235 98 64 chr6 61806325 61806561 -87710476 - RLTR25B LTR ERVK 0 1028 785 4 1056 1436 186 14 47 chr6 61806646 61806973 -87710064 - RLTR25A LTR ERVK -646 457 169 4 1056 228 191 0 45 chr6 61806973 61807017 -87710020 - RLTR25A LTR ERVK -986 42 1 4 1056 1577 22 6 0 chr6 61807083 61807266 -87709771 - B2_Mm1t SINE B2 -7 186 3 4 1056 297 351 52 112 chr6 61807366 61807732 -87709305 - MLT1B LTR MaLR -46 344 1 4 1056 198 0 0 0 chr6 61809493 61809515 -87707522 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1056 1087 79 0 0 chr6 61809515 61809654 -87707383 - B1_Mus1 SINE Alu -8 140 2 4 1056 497 342 0 68 chr6 61810009 61810172 -87706865 + RSINE1 SINE B4 14 165 0 4 1056 2012 96 3 0 chr6 61810267 61810549 -87706488 - L1_Mus1 LINE L1 -1 6566 6284 4 1056 479 282 87 42 chr6 61811009 61811298 -87705739 - L1MD LINE L1 -736 5623 5322 4 1056 216 0 0 0 chr6 61811360 61811384 -87705653 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 4 1056 21 36 0 0 chr6 61813415 61813443 -87703594 + AT_rich Low_complexity Low_complexity 1 28 0 4 1056 4162 158 23 12 chr6 61813549 61814284 -87702753 - Lx LINE L1 -2 6652 5910 4 1056 4848 189 40 15 chr6 61814327 61815493 -87701544 + L1_Mur3 LINE L1 2538 3732 -2148 4 1056 576 149 40 8 chr6 61815597 61815712 -87701325 - ORR1B1 LTR MaLR -253 125 1 4 1056 860 201 118 5 chr6 61815712 61815894 -87701143 - URR1A DNA MER1_type -22 204 1 4 1056 334 225 20 55 chr6 61816068 61816214 -87700823 + T-rich Low_complexity Low_complexity 4 144 0 4 1056 547 148 37 0 chr6 61818088 61818223 -87698814 + (TA)n Simple_repeat Simple_repeat 2 141 0 4 1056 28 61 0 0 chr6 61818224 61818273 -87698764 + AT_rich Low_complexity Low_complexity 1 49 0 4 1056 7904 52 1 2 chr6 61818273 61819467 -87697570 - L1Md_F2 LINE L1 -5 6577 5387 4 1056 1609 186 112 0 chr6 61820699 61821022 -87696015 - ORR1B2 LTR MaLR -8 359 1 4 1056 249 146 0 0 chr6 61821068 61821116 -87695921 + (CAT)n Simple_repeat Simple_repeat 3 50 0 4 1056 660 282 50 46 chr6 61821660 61821942 -87695095 + B4A SINE B4 5 287 -5 4 1056 210 156 0 0 chr6 61822445 61822490 -87694547 + T-rich Low_complexity Low_complexity 5 49 0 4 1056 8766 18 0 1 chr6 61822495 61823651 -87693386 - L1Md_T LINE L1 0 6582 5428 4 1056 445 181 85 0 chr6 61823650 61823744 -87693293 - Lx2 LINE L1 -25 6972 6871 4 1056 222 174 0 0 chr6 61824613 61824659 -87692378 + A-rich Low_complexity Low_complexity 1 46 0 4 1056 288 0 0 0 chr6 61824679 61824711 -87692326 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1056 477 105 37 19 chr6 61826700 61826807 -87690230 + (TCTCTG)n Simple_repeat Simple_repeat 6 114 0 4 1056 27 0 0 0 chr6 61827090 61827117 -87689920 + AT_rich Low_complexity Low_complexity 1 27 0 4 1056 973 254 147 155 chr6 61827368 61827898 -87689139 - MT2B LTR ERVL -7 594 1 4 1056 247 240 0 0 chr6 61828736 61828786 -87688251 + Tigger7 DNA MER2_type 304 353 -2138 4 1056 246 256 21 62 chr6 61828879 61828975 -87688062 + CT-rich Low_complexity Low_complexity 4 95 0 4 1056 271 211 0 0 chr6 61829524 61829581 -87687456 - Tigger5 DNA MER2_type -178 2228 2172 4 1056 1032 250 19 90 chr6 61830933 61831298 -87685739 + Lx9 LINE L1 7155 7493 -151 4 1056 255 93 0 0 chr6 61831309 61831352 -87685685 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 4 1056 275 242 15 59 chr6 61831380 61831516 -87685521 + Lx9 LINE L1 7511 7640 -4 4 1056 198 103 0 0 chr6 61832941 61832970 -87684067 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1056 189 121 0 0 chr6 61833520 61833553 -87683484 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1056 520 337 28 22 chr6 61833556 61833735 -87683302 - B3A SINE B2 -16 182 3 4 1056 1441 182 62 49 chr6 61833735 61834104 -87682933 + ORR1D1 LTR MaLR 1 374 0 4 1056 22 0 0 0 chr6 61834195 61834217 -87682820 + AT_rich Low_complexity Low_complexity 1 22 0 4 1056 2617 103 9 45 chr6 61834556 61834982 -87682055 - IAPLTR2a LTR ERVK 0 411 1 4 1056 441 290 30 30 chr6 61835116 61835251 -87681786 - MER5A DNA MER1_type -9 180 46 4 1056 405 0 0 0 chr6 61835429 61835474 -87681563 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 4 1056 342 0 0 0 chr6 61835474 61835512 -87681525 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1056 393 382 92 19 chr6 61837550 61837918 -87679119 - L4 LINE RTE -275 1754 1360 4 1056 27 0 0 0 chr6 61838772 61838799 -87678238 + AT_rich Low_complexity Low_complexity 1 27 0 4 1056 21 57 0 0 chr6 61839363 61839398 -87677639 + AT_rich Low_complexity Low_complexity 1 35 0 4 1056 21 57 0 0 chr6 61839467 61839502 -87677535 + AT_rich Low_complexity Low_complexity 1 35 0 4 1056 480 35 0 0 chr6 61840351 61840409 -87676628 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1056 339 65 0 0 chr6 61840412 61840458 -87676579 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1056 840 310 61 18 chr6 61840491 61840885 -87676152 - Lx8 LINE L1 -327 7146 6736 4 1056 180 0 0 0 chr6 61841027 61841047 -87675990 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 1056 8564 68 8 54 chr6 61841053 61842971 -87674066 - L1Md_A LINE L1 -12 6570 4781 4 1056 685 80 0 0 chr6 61843105 61843205 -87673832 - L1_Mus1 LINE L1 -1 6566 6467 4 1056 5301 76 27 0 chr6 61843205 61843901 -87673136 + L1_Mus1 LINE L1 5753 6467 -100 4 1056 2103 297 42 23 chr6 61845111 61845665 -87671372 + Lx8 LINE L1 6248 6805 -668 4 1056 1118 86 85 11 chr6 61845665 61845841 -87671196 - B2_Mm2 SINE B2 -4 191 3 4 1056 2103 292 99 29 chr6 61845841 61846428 -87670609 + Lx8 LINE L1 6806 7470 -3 4 1056 6051 10 0 0 chr6 61846928 61847604 -87669433 + L1Md_T LINE L1 5907 6582 0 4 1056 252 0 0 0 chr6 61847619 61847647 -87669390 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1056 186 118 0 0 chr6 61847768 61847802 -87669235 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1056 2312 264 79 29 chr6 61849728 61850499 -87666538 - Lx9 LINE L1 -751 6893 6084 4 1056 306 0 0 0 chr6 61850605 61850639 -87666398 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1056 23 33 0 0 chr6 61850650 61850680 -87666357 + AT_rich Low_complexity Low_complexity 1 30 0 4 1056 618 14 0 0 chr6 61851225 61851296 -87665741 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1056 424 59 29 0 chr6 61851442 61851510 -87665527 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 4 1056 1259 53 0 0 chr6 61851830 61851982 -87665055 - L1_Mus2 LINE L1 -298 6268 6117 4 1056 2269 70 3 3 chr6 61851982 61852285 -87664752 + L1_Mus2 LINE L1 6263 6565 -1 4 1056 1620 138 95 63 chr6 61852455 61852771 -87664266 - ORR1A3 LTR MaLR 0 326 1 4 1056 619 308 66 0 chr6 61852997 61853195 -87663842 + ID_B1 SINE B4 2 212 -12 4 1056 180 77 0 0 chr6 61853254 61853280 -87663757 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1056 1718 231 23 119 chr6 61853280 61853933 -87663104 - Lx7 LINE L1 -9 7687 7098 4 1056 748 139 14 14 chr6 61853970 61854116 -87662921 - L1_Mus3 LINE L1 0 6638 6493 4 1056 3166 148 0 2 chr6 61854120 61854633 -87662404 - L1_Mm LINE L1 -16 5867 5356 4 1056 10669 127 11 14 chr6 61854625 61856322 -87660715 + L1_Mm LINE L1 3600 5297 -586 4 1056 1057 59 15 0 chr6 61856322 61856457 -87660580 + B1_Mm SINE Alu 1 137 -10 4 1056 208 0 62 0 chr6 61856457 61856489 -87660548 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1056 10669 127 11 14 chr6 61856489 61856555 -87660482 + L1_Mm LINE L1 5298 5358 -525 4 1056 4576 246 65 23 chr6 61856548 61856777 -87660260 - Lx7 LINE L1 -694 7002 6765 4 1056 207 69 0 0 chr6 61856777 61856806 -87660231 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1056 9309 216 59 21 chr6 61856806 61858504 -87658533 - Lx7 LINE L1 -932 6764 5025 4 1056 189 0 0 0 chr6 61858504 61858525 -87658512 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1056 996 81 15 0 chr6 61858525 61858661 -87658376 - B1_Mus1 SINE Alu -9 139 2 4 1056 9309 184 53 19 chr6 61858661 61859949 -87657088 - Lx7 LINE L1 -856 5024 3679 4 1056 2019 70 0 0 chr6 61859952 61860211 -87656826 + L1_Mus1 LINE L1 6309 6567 0 5 1056 2186 116 55 3 chr6 61861082 61861428 -87655609 - Lx LINE L1 -6 6648 6285 5 1056 391 97 8 0 chr6 61861428 61861492 -87655545 + Lx LINE L1 6237 6307 -275 5 1056 7470 44 4 1 chr6 61861514 61862431 -87654606 + L1Md_F3 LINE L1 5651 6570 -14 5 1056 342 330 36 48 chr6 61862476 61862727 -87654310 + Tigger5 DNA MER2_type 2159 2406 0 5 1056 830 311 47 49 chr6 61863050 61863435 -87653602 - RLTR17 LTR ERVK -193 499 116 5 1056 255 132 14 29 chr6 61863565 61863635 -87653402 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1056 513 347 36 33 chr6 61863656 61863930 -87653107 - B4A SINE B4 -8 284 10 5 1056 212 136 45 0 chr6 61863954 61863998 -87653039 + T-rich Low_complexity Low_complexity 2 47 0 5 1056 538 233 112 28 chr6 61864281 61864520 -87652517 - Lx7 LINE L1 -10 5837 5606 5 1056 225 0 0 0 chr6 61864658 61864683 -87652354 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 1056 1090 95 7 0 chr6 61864719 61864866 -87652171 - B1_Mus1 SINE Alu 0 148 1 5 1056 387 0 0 0 chr6 61864886 61864929 -87652108 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1056 419 325 37 55 chr6 61864941 61865104 -87651933 - B3A SINE B2 0 198 39 5 1056 698 297 52 37 chr6 61865105 61865511 -87651526 - L1MA5 LINE L1 -395 6141 5730 5 16 2116 222 56 22 chr6 61865541 61866162 -87650875 - BGLII_B LTR ERVK -6 547 1 5 1057 270 226 93 19 chr6 61866196 61866304 -87650733 - L1MA5 LINE L1 -787 5623 5508 5 1057 3590 96 48 29 chr6 61866316 61866816 -87650221 - RLTR13D5 LTR ERVK 0 1023 511 5 1057 243 0 0 0 chr6 61866816 61866843 -87650194 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1057 829 81 97 0 chr6 61866843 61866967 -87650070 - B1_Mm SINE Alu -10 137 2 5 1057 3590 96 48 29 chr6 61866967 61867011 -87650026 - RLTR13D5 LTR ERVK -513 510 469 5 1057 405 0 0 0 chr6 61867011 61867056 -87649981 + (T)n Simple_repeat Simple_repeat 1 45 0 5 1057 37858 29 0 0 chr6 61867076 61873484 -87643553 - L1Md_T LINE L1 -12 6573 66 5 1057 3570 78 4 0 chr6 61873484 61873958 -87643079 - RLTR13D5 LTR ERVK -547 476 1 5 1057 268 231 26 0 chr6 61873994 61874072 -87642965 - L1MA5 LINE L1 -918 5458 5379 5 1057 21 36 0 0 chr6 61874210 61874238 -87642799 + AT_rich Low_complexity Low_complexity 1 28 0 5 1057 421 302 43 55 chr6 61874279 61874678 -87642359 - L1MA5 LINE L1 -3888 2496 2103 5 1057 477 0 0 0 chr6 61874923 61874976 -87642061 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1057 255 103 0 0 chr6 61874977 61875016 -87642021 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 1057 552 56 0 0 chr6 61875171 61875243 -87641794 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1057 661 356 20 5 chr6 61875246 61875449 -87641588 - B4 SINE B4 -34 258 53 5 1057 270 244 60 48 chr6 61875462 61875630 -87641407 - L1MA5 LINE L1 -5401 983 814 5 1057 1059 367 64 46 chr6 61875660 61876560 -87640477 - Lx8 LINE L1 -134 7339 6423 5 1057 570 67 0 0 chr6 61876579 61876654 -87640383 + (TTTTC)n Simple_repeat Simple_repeat 3 77 0 5 1057 496 308 138 40 chr6 61876660 61877008 -87640029 - Lx8 LINE L1 -1293 6403 6022 5 1057 1067 103 0 14 chr6 61877079 61877227 -87639810 - B1_Mus1 SINE Alu -1 147 2 5 1057 751 282 17 31 chr6 61877314 61877603 -87639434 + L1_Mur3 LINE L1 4777 5061 -819 5 1057 300 137 0 0 chr6 61877816 61877867 -87639170 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1057 380 328 24 65 chr6 61877868 61878116 -87638921 - L1MA5 LINE L1 -5905 479 242 5 1057 360 0 0 0 chr6 61878268 61878308 -87638729 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1057 396 0 0 0 chr6 61879867 61879911 -87637126 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1057 5274 46 9 18 chr6 61880707 61881377 -87635660 - L1Md_F2 LINE L1 -12 6570 5907 5 1057 1966 74 1 3 chr6 61881380 61881641 -87635396 - L1_Mm LINE L1 -281 5602 5364 5 1057 236 20 75 38 chr6 61882868 61882921 -87634116 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 5 1057 1168 221 53 74 chr6 61884468 61884845 -87632192 - ORR1D1 LTR MaLR -5 369 1 5 1057 3465 281 97 43 chr6 61884845 61885542 -87631495 - ORR1D1-int LTR MaLR 0 1370 622 5 1057 1697 51 0 0 chr6 61885542 61885756 -87631281 - L1Md_T LINE L1 0 6582 6369 5 1057 3465 281 97 43 chr6 61885756 61886358 -87630679 - ORR1D1-int LTR MaLR -749 621 1 5 1057 1413 268 19 25 chr6 61886376 61886740 -87630297 - ORR1D1 LTR MaLR -8 366 5 5 1057 369 0 0 0 chr6 61886789 61886830 -87630207 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1057 549 206 0 0 chr6 61886865 61886972 -87630065 + ORR1C2 LTR MaLR 18 124 -260 5 1057 296 330 30 0 chr6 61887851 61887951 -87629086 - MER68 LTR ERVL -459 104 2 5 1057 553 258 138 63 chr6 61890822 61890971 -87626066 + B3A SINE B2 6 160 -33 5 1057 495 33 0 0 chr6 61890971 61891032 -87626005 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1057 303 258 138 63 chr6 61891032 61891056 -87625981 + B2_Mm1a SINE B2 161 191 -2 5 1057 383 327 19 0 chr6 61892854 61892961 -87624076 + B3A SINE B2 5 113 -85 5 1057 788 311 46 0 chr6 61893453 61893649 -87623388 + B3 SINE B2 10 214 -2 5 1057 22 0 0 0 chr6 61894570 61894592 -87622445 + AT_rich Low_complexity Low_complexity 1 22 0 5 1057 646 255 11 75 chr6 61894729 61894903 -87622134 + B3A SINE B2 36 198 0 5 1057 27 0 0 0 chr6 61895214 61895241 -87621796 + AT_rich Low_complexity Low_complexity 1 27 0 5 1057 195 371 25 17 chr6 61896068 61896186 -87620851 + MIR SINE MIR 32 150 -112 5 1057 1975 291 93 31 chr6 61896257 61896417 -87620620 - RCHARR1 DNA MER1_type -23 951 796 5 1057 1236 116 26 0 chr6 61896417 61896607 -87620430 + B2_Mm2 SINE B2 1 195 0 5 1057 1975 291 93 31 chr6 61896607 61897338 -87619699 - RCHARR1 DNA MER1_type -179 795 5 5 1057 192 149 0 0 chr6 61898947 61898994 -87618043 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1057 319 113 0 19 chr6 61898995 61899049 -87617988 + HAL1-3A_ME LINE L1 1976 2028 -830 5 1057 255 154 0 0 chr6 61899049 61899114 -87617923 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1057 312 203 0 15 chr6 61899115 61899180 -87617857 + HAL1-3A_ME LINE L1 1976 2039 -819 5 1057 1572 98 12 16 chr6 61901278 61901527 -87615510 - L1_Mus3 LINE L1 0 6638 6391 5 1057 25 31 0 0 chr6 61902426 61902458 -87614579 + AT_rich Low_complexity Low_complexity 1 32 0 5 1057 2320 220 43 87 chr6 61902535 61902661 -87614376 + RMER6C LTR ERVK 1 127 -563 5 1057 192 77 0 0 chr6 61902661 61902687 -87614350 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1057 7205 15 12 0 chr6 61902687 61903499 -87613538 - RLTR13B2 LTR ERVK 0 822 1 5 1057 2320 220 43 87 chr6 61903499 61904093 -87612944 + RMER6C LTR ERVK 128 689 -1 5 1057 832 288 21 0 chr6 61904323 61904514 -87612523 - B3 SINE B2 -6 210 16 5 1057 3181 155 29 52 chr6 61904571 61905184 -87611853 + RMER6D LTR ERVK 112 710 -10 5 1057 280 299 23 8 chr6 61905226 61905354 -87611683 - L1MA5 LINE L1 -7 6293 6164 5 1057 474 341 77 0 chr6 61905650 61905820 -87611217 - B3A SINE B2 -14 184 2 5 1057 223 270 0 16 chr6 61906072 61906136 -87610901 + A-rich Low_complexity Low_complexity 2 64 0 5 1057 275 150 17 0 chr6 61906342 61906402 -87610635 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 5 1057 290 182 0 15 chr6 61906834 61906901 -87610136 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1057 789 266 41 44 chr6 61907813 61908108 -87608929 + Lx7 LINE L1 7026 7319 -377 5 1057 256 262 0 0 chr6 61908216 61908277 -87608760 + Lx7 LINE L1 7619 7679 -17 5 1057 29 28 0 0 chr6 61908277 61908313 -87608724 + AT_rich Low_complexity Low_complexity 1 36 0 5 1057 743 324 11 21 chr6 61908499 61908688 -87608349 + B3 SINE B2 2 188 -28 5 1057 365 54 18 0 chr6 61908688 61908744 -87608293 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1057 212 216 0 0 chr6 61908925 61908962 -87608075 + B2_Mm1t SINE B2 11 47 -146 5 1057 311 265 10 0 chr6 61909469 61909571 -87607466 + (TA)n Simple_repeat Simple_repeat 2 104 0 5 1057 1418 298 44 29 chr6 61910381 61910907 -87606130 - RMER5 LTR ERV1 0 534 1 5 1057 32 67 0 0 chr6 61911700 61911760 -87605277 + AT_rich Low_complexity Low_complexity 1 60 0 5 1057 796 89 16 0 chr6 61911851 61911974 -87605063 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 5 1057 365 81 16 0 chr6 61912231 61912293 -87604744 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 5 1057 454 305 143 10 chr6 61912309 61912610 -87604427 - Lx8 LINE L1 -166 7307 6967 5 1057 251 260 18 0 chr6 61913151 61913217 -87603820 - B3 SINE B2 -131 67 1 5 1057 25 31 0 0 chr6 61913226 61913258 -87603779 + AT_rich Low_complexity Low_complexity 1 32 0 5 1057 2372 293 71 24 chr6 61913418 61914289 -87602748 - Lx7 LINE L1 -426 7270 6359 5 1057 1071 73 0 0 chr6 61914732 61914868 -87602169 + B1_Mus1 SINE Alu 1 136 -12 5 1057 780 11 0 0 chr6 61914868 61914957 -87602080 + (GAA)n Simple_repeat Simple_repeat 3 91 0 5 1057 552 200 0 0 chr6 61915530 61915670 -87601367 + (CA)n Simple_repeat Simple_repeat 1 140 0 5 1057 402 232 8 51 chr6 61917130 61917248 -87599789 - Lx4B LINE L1 -12 7046 6934 5 1057 443 305 124 74 chr6 61917357 61917615 -87599422 - MLT1B LTR MaLR -17 373 103 5 1057 276 30 0 0 chr6 61919301 61919334 -87597703 + (TTG)n Simple_repeat Simple_repeat 1 33 0 5 1057 1031 100 0 0 chr6 61919335 61919475 -87597562 - B1_Mm SINE Alu -7 140 1 5 1057 240 35 0 0 chr6 61919532 61919561 -87597476 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 5 1057 727 263 91 0 chr6 61919561 61919753 -87597284 - Lx5 LINE L1 -14 7036 6827 5 1057 274 346 0 0 chr6 61920645 61920723 -87596314 - Lx8 LINE L1 -232 7241 7164 5 1057 755 152 112 39 chr6 61920731 61920831 -87596206 - RMER6A LTR ERVK 0 720 618 5 1057 399 98 0 0 chr6 61920831 61920892 -87596145 + (TCTG)n Simple_repeat Simple_repeat 3 63 0 5 1057 1176 207 61 56 chr6 61920892 61921312 -87595725 - RMER6A LTR ERVK -64 692 314 5 1057 225 0 0 0 chr6 61921332 61921357 -87595680 + (TCC)n Simple_repeat Simple_repeat 2 26 0 5 1057 1269 230 101 14 chr6 61921357 61921781 -87595256 - RMER6D LTR ERVK -259 461 1 5 1057 23 0 0 0 chr6 61922055 61922078 -87594959 + AT_rich Low_complexity Low_complexity 1 23 0 5 1057 989 129 12 0 chr6 61922465 61922635 -87594402 + (TTCC)n Simple_repeat Simple_repeat 2 173 0 5 1057 6816 108 11 42 chr6 61922740 61923634 -87593403 - L1_Mus4 LINE L1 -21 6615 5754 5 1057 1685 26 0 0 chr6 61923634 61923826 -87593211 - B2_Mm1t SINE B2 0 193 2 5 1057 6816 144 34 67 chr6 61923826 61924926 -87592111 - L1_Mus4 LINE L1 -130 5753 4676 5 1057 3600 222 112 42 chr6 61924921 61926091 -87590946 + L1_Mur3 LINE L1 4406 5657 -223 5 1057 40 21 0 0 chr6 61926651 61926698 -87590339 + AT_rich Low_complexity Low_complexity 1 47 0 5 1057 21 0 0 0 chr6 61927457 61927478 -87589559 + AT_rich Low_complexity Low_complexity 1 21 0 6 1057 24 32 0 0 chr6 61928820 61928851 -87588186 + AT_rich Low_complexity Low_complexity 1 31 0 6 1057 23 0 0 0 chr6 61928909 61928932 -87588105 + AT_rich Low_complexity Low_complexity 1 23 0 6 1057 41184 5 0 0 chr6 61928932 61935282 -87581755 - L1Md_A LINE L1 0 6582 232 6 1057 21 0 0 0 chr6 61935334 61935355 -87581682 + AT_rich Low_complexity Low_complexity 1 21 0 6 1057 229 170 38 0 chr6 61936490 61936577 -87580460 + (TCTCTG)n Simple_repeat Simple_repeat 1 90 0 6 1057 248 162 36 50 chr6 61936945 61937012 -87580025 + MIR SINE MIR 162 229 -39 6 1057 252 21 61 41 chr6 61937909 61937958 -87579079 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 6 1057 225 0 0 0 chr6 61938017 61938042 -87578995 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 6 1057 8221 43 4 2 chr6 61938058 61939323 -87577714 - L1Md_F2 LINE L1 -2 6580 5313 6 1057 208 316 158 0 chr6 61939437 61939513 -87577524 + MIRb SINE MIR 26 113 -155 6 1057 281 271 112 24 chr6 61939636 61939761 -87577276 + Lx4B LINE L1 6918 7053 -5 6 1057 28 48 0 0 chr6 61940751 61940793 -87576244 + AT_rich Low_complexity Low_complexity 1 42 0 6 1057 22 0 0 0 chr6 61941275 61941297 -87575740 + AT_rich Low_complexity Low_complexity 1 22 0 6 1057 1508 251 65 27 chr6 61942239 61942274 -87574763 - MT2A LTR ERVL -1 532 498 6 1057 825 11 0 0 chr6 61942274 61942368 -87574669 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 6 1057 1508 251 65 27 chr6 61942368 61942843 -87574194 - MT2A LTR ERVL -36 497 5 6 1057 263 275 136 71 chr6 61944206 61944390 -87572647 + LTR78 LTR ERV1 1044 1239 -65 6 1057 231 115 0 62 chr6 61945037 61945102 -87571935 + (CAA)n Simple_repeat Simple_repeat 1 61 0 6 1057 189 0 0 0 chr6 61945122 61945143 -87571894 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1057 333 125 0 0 chr6 61945175 61945231 -87571806 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1057 535 309 152 4 chr6 61945638 61945875 -87571162 - B4A SINE B4 -20 272 1 6 1057 264 296 69 39 chr6 61946288 61946492 -87570545 + L1M2 LINE L1 4157 4366 -1777 6 1057 450 0 0 0 chr6 61946536 61946586 -87570451 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1057 736 342 40 5 chr6 61946586 61947012 -87570025 + L1M2 LINE L1 4481 4921 -1222 6 1057 1168 281 25 49 chr6 61949014 61949325 -87567712 + ORR1D2 LTR MaLR 1 312 -58 6 1057 242 29 0 28 chr6 61949325 61949361 -87567676 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1057 1168 281 25 49 chr6 61949361 61949416 -87567621 + ORR1D2 LTR MaLR 313 358 -12 6 1057 351 0 0 0 chr6 61949561 61949600 -87567437 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1057 683 292 90 30 chr6 61949609 61949877 -87567160 - B4 SINE B4 -8 284 1 6 1057 363 194 19 10 chr6 61950333 61950437 -87566600 + (CATATA)n Simple_repeat Simple_repeat 4 108 0 6 1057 819 152 7 0 chr6 61951052 61951203 -87565834 - L1_Mus2 LINE L1 0 6566 6415 6 1057 335 262 126 36 chr6 61951203 61951308 -87565729 - B1_Mur1 SINE Alu -26 121 6 6 1057 252 322 160 56 chr6 61951205 61951330 -87565707 - B4 SINE B4 -86 206 69 6 1057 378 318 0 105 chr6 61951889 61951913 -87565124 + ID_B1 SINE B4 69 222 -2 6 1057 636 264 0 9 chr6 61951913 61952061 -87564976 + B1_Mur2 SINE Alu 5 149 -1 6 1057 755 271 75 46 chr6 61952149 61952581 -87564456 + L1MB3 LINE L1 5505 5942 -1531 6 1057 384 353 91 70 chr6 61953025 61953543 -87563494 + L1MB3 LINE L1 6826 7354 -119 6 1057 394 135 0 53 chr6 61953699 61953793 -87563244 - L1Md_F2 LINE L1 0 6582 6494 6 1057 857 81 8 0 chr6 61955646 61955769 -87561268 + (TCTA)n Simple_repeat Simple_repeat 4 127 0 6 1057 198 125 53 18 chr6 61955974 61956031 -87561006 + CT-rich Low_complexity Low_complexity 4 62 0 6 1057 545 333 75 34 chr6 61956515 61957022 -87560015 - Lx8 LINE L1 -233 7240 6692 6 1057 238 275 0 0 chr6 61957956 61958036 -87559001 - L1_Mm LINE L1 -1428 4455 4376 6 1057 3625 63 17 2 chr6 61958366 61958840 -87558197 - L1_Mus2 LINE L1 0 6566 6086 6 1057 5894 71 3 0 chr6 61958840 61959622 -87557415 - Lx3_Mus LINE L1 -1097 5912 5129 6 1057 1294 121 0 5 chr6 61959622 61959822 -87557215 + L1_Mm LINE L1 4879 5077 -806 6 1057 24 0 0 0 chr6 61960344 61960368 -87556669 + AT_rich Low_complexity Low_complexity 1 24 0 6 1057 886 276 97 62 chr6 61960788 61961252 -87555785 + Lx9 LINE L1 6979 7458 -186 6 1057 492 195 8 85 chr6 61961384 61961513 -87555524 - MT2A LTR ERVL 0 584 466 6 1057 673 241 52 74 chr6 61961523 61961752 -87555285 - MT2A LTR ERVL -307 226 3 6 1057 22 0 0 0 chr6 61961761 61961783 -87555254 + AT_rich Low_complexity Low_complexity 1 22 0 6 1057 320 323 31 39 chr6 61962808 61962937 -87554100 + MIR SINE MIR 31 158 -104 6 1057 243 319 77 0 chr6 61963316 61963407 -87553630 + B4A SINE B4 115 212 -80 6 1057 468 91 0 0 chr6 61963413 61963479 -87553558 + (CATA)n Simple_repeat Simple_repeat 2 67 0 6 1057 344 88 18 0 chr6 61963550 61963607 -87553430 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1057 464 325 30 42 chr6 61966200 61966367 -87550670 + B4A SINE B4 3 167 -125 6 1057 317 320 46 26 chr6 61966364 61966515 -87550522 + B4A SINE B4 106 259 -33 6 1057 1616 151 42 133 chr6 61966612 61967063 -87549974 - RMER17C LTR ERVK 0 410 1 6 1057 279 0 0 0 chr6 61967119 61967150 -87549887 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1057 207 0 0 0 chr6 61967150 61967172 -87549865 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1057 600 14 0 0 chr6 61967589 61967658 -87549379 + (TCTTG)n Simple_repeat Simple_repeat 1 69 0 6 1057 24 0 0 0 chr6 61969010 61969034 -87548003 + AT_rich Low_complexity Low_complexity 1 24 0 6 1057 2419 251 75 56 chr6 61970369 61971115 -87545922 + MTC-int LTR MaLR 7 766 -492 6 1057 12508 98 4 1 chr6 61971121 61973023 -87544014 - L1_Mus1 LINE L1 -606 5961 4054 6 1057 1463 270 39 16 chr6 61973394 61973781 -87543256 - MTD LTR MaLR -23 396 1 6 1057 3114 271 80 39 chr6 61973783 61975469 -87541568 - L1_Rod LINE L1 -1533 4314 2560 6 1057 582 71 0 0 chr6 61976259 61976343 -87540694 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1057 232 165 62 12 chr6 61976536 61976616 -87540421 - Lx5 LINE L1 0 7050 6967 6 1057 252 241 19 0 chr6 61976632 61976686 -87540351 - RMER15 LTR ERVL -517 58 4 6 1057 22 0 0 0 chr6 61976743 61976765 -87540272 + AT_rich Low_complexity Low_complexity 1 22 0 6 1057 976 331 52 3 chr6 61978363 61978745 -87538292 - Lx8 LINE L1 -402 7071 6671 6 1057 727 302 84 37 chr6 61978795 61979176 -87537861 - Lx8 LINE L1 -884 6589 6191 6 1057 2843 57 2 98 chr6 61979402 61979831 -87537206 - RLTR10 LTR ERVK -2 388 1 6 1057 22 0 0 0 chr6 61980521 61980543 -87536494 + AT_rich Low_complexity Low_complexity 1 22 0 6 1057 448 104 27 54 chr6 61980973 61981085 -87535952 - L1Md_T LINE L1 -1 6581 6473 6 1057 2543 120 14 29 chr6 61981293 61981713 -87535324 - Lx LINE L1 -3 6651 6238 6 1057 2490 286 78 24 chr6 61982430 61983370 -87533667 + Lx7 LINE L1 5194 6169 -1527 6 1057 513 0 0 0 chr6 61983370 61983427 -87533610 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 6 1057 2490 322 82 50 chr6 61983427 61984518 -87532519 + Lx7 LINE L1 6170 7302 -394 6 1057 236 159 55 99 chr6 61984619 61984710 -87532327 + Lx8 LINE L1 7358 7444 -29 6 1057 713 270 54 5 chr6 61984766 61984971 -87532066 + B3 SINE B2 1 215 -1 6 1057 182 118 59 0 chr6 61985002 61985036 -87532001 + L3 LINE CR1 1161 1196 -3293 6 1057 182 255 39 19 chr6 61985081 61985133 -87531904 - L2 LINE L2 -1413 2006 1954 6 1057 37880 31 1 0 chr6 61985187 61992177 -87524860 - L1Md_T LINE L1 0 6585 1 6 1057 267 31 0 0 chr6 61992247 61992279 -87524758 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 6 1057 871 276 4 21 chr6 61992279 61992512 -87524525 - Lx5 LINE L1 -16 7034 6806 6 1057 845 273 59 4 chr6 61993504 61993743 -87523294 - Lx5 LINE L1 -50 7000 6749 6 1057 475 244 92 3 chr6 61993933 61994073 -87522964 - Lx9 LINE L1 -1096 6548 6288 6 1057 301 160 81 25 chr6 61994129 61994289 -87522748 + (TA)n Simple_repeat Simple_repeat 1 169 0 6 1057 24 0 0 0 chr6 61994290 61994314 -87522723 + AT_rich Low_complexity Low_complexity 1 24 0 6 1057 1445 148 27 23 chr6 61994364 61994620 -87522417 - RLTR22_Mur LTR ERVK 0 1848 1592 6 1057 5656 94 7 40 chr6 61994861 61995494 -87521543 - RLTR22_Mus LTR ERVK -959 849 245 6 1057 919 85 0 14 chr6 61995494 61995637 -87521400 + L1Md_F2 LINE L1 6442 6582 0 6 1057 5656 94 7 40 chr6 61995637 61995881 -87521156 - RLTR22_Mus LTR ERVK -1564 244 1 6 1057 734 282 26 39 chr6 61995931 61996343 -87520694 - Lx9 LINE L1 -1594 6050 5604 6 1057 27 49 0 0 chr6 61996764 61996805 -87520232 + AT_rich Low_complexity Low_complexity 1 41 0 6 1057 288 0 0 0 chr6 61996883 61996915 -87520122 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1058 470 304 121 12 chr6 61997429 61997886 -87519151 + L1MA6 LINE L1 5776 6285 -12 6 1058 246 62 0 0 chr6 61998200 61998232 -87518805 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 1058 1249 152 51 0 chr6 61998237 61998474 -87518563 - Lx3B LINE L1 -4 6969 6721 6 1058 21 104 0 0 chr6 61998685 61998762 -87518275 + AT_rich Low_complexity Low_complexity 1 77 0 6 1058 279 331 107 8 chr6 61999878 62000000 -87517037 + B1F SINE Alu 1 134 -15 6 1058 21 0 0 0 chr6 62000158 62000179 -87516858 + AT_rich Low_complexity Low_complexity 1 21 0 1 1058 36 70 0 0 chr6 62000333 62000404 -87516633 + AT_rich Low_complexity Low_complexity 1 71 0 2 1058 805 171 41 0 chr6 62000642 62000788 -87516249 + Lx2B LINE L1 6475 6626 -374 3 1058 451 248 30 18 chr6 62000795 62000838 -87516199 + ID_B1 SINE B4 44 198 -94 4 1058 713 139 0 0 chr6 62000838 62000953 -87516084 + B1_Mus2 SINE Alu 1 115 -32 5 1058 432 0 0 0 chr6 62000953 62001001 -87516036 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1058 548 224 31 112 chr6 62001042 62001241 -87515796 - Lx3C LINE L1 -688 6293 6110 7 1058 6364 212 42 40 chr6 62001467 62002660 -87514377 - Lx2B LINE L1 -12 6988 5786 8 1058 3880 71 0 4 chr6 62002660 62003169 -87513868 - L1Md_F2 LINE L1 -12 6570 6064 9 1058 6364 156 13 17 chr6 62003169 62003682 -87513355 - Lx2B LINE L1 -92 5785 5263 8 1058 203 0 0 36 chr6 62003682 62003710 -87513327 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1 1058 6364 156 13 17 chr6 62003710 62004237 -87512800 - Lx2B LINE L1 -615 5262 4738 8 1058 227 219 16 0 chr6 62004957 62005021 -87512016 + (TTTAA)n Simple_repeat Simple_repeat 4 68 0 1 1058 543 291 133 34 chr6 62005032 62005574 -87511463 + L1ME2z LINE L1 5449 6034 -128 1 1058 481 354 32 32 chr6 62005971 62006158 -87510879 + MTEa LTR MaLR 35 221 -158 1 1058 2962 82 5 0 chr6 62006187 62006577 -87510460 - L1_Mus1 LINE L1 0 6567 6176 1 1058 3574 60 0 2 chr6 62006577 62007025 -87510012 + L1_Mus1 LINE L1 5714 6160 -407 1 1058 234 0 0 0 chr6 62007026 62007052 -87509985 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1058 325 300 44 0 chr6 62007098 62007188 -87509849 + MTEa LTR MaLR 279 372 -7 1 1058 243 355 0 62 chr6 62007323 62007419 -87509618 + PB1 SINE Alu 30 119 -8 1 1058 438 114 0 0 chr6 62008322 62008392 -87508645 + (CAA)n Simple_repeat Simple_repeat 3 72 0 1 1058 204 125 0 0 chr6 62009917 62009949 -87507088 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1058 1079 82 0 26 chr6 62010770 62010786 -87506251 - B1_Mus2 SINE Alu 0 147 135 1 1058 245 51 26 0 chr6 62010786 62010825 -87506212 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 1058 1079 82 0 26 chr6 62010825 62010959 -87506078 - B1_Mus2 SINE Alu -13 134 1 1 1058 321 348 0 38 chr6 62011084 62011269 -87505768 + G-rich Low_complexity Low_complexity 2 179 0 2 1058 265 369 0 38 chr6 62011283 62011469 -87505568 + G-rich Low_complexity Low_complexity 1 179 0 2 1058 189 346 12 49 chr6 62011594 62011676 -87505361 + MIRb SINE MIR 95 173 -95 2 1058 414 0 0 0 chr6 62011862 62011908 -87505129 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1058 22 35 0 0 chr6 62012657 62012686 -87504351 + AT_rich Low_complexity Low_complexity 1 29 0 2 1058 3270 91 2 0 chr6 62012807 62013245 -87503792 + L1_Mus2 LINE L1 6127 6565 -1 2 1058 28 38 0 19 chr6 62013351 62013380 -87503657 + AT_rich Low_complexity Low_complexity 1 29 0 2 1058 526 239 39 0 chr6 62013380 62013510 -87503527 + B1_Mur1 SINE Alu 3 137 -12 2 1058 28 38 0 19 chr6 62013510 62013533 -87503504 + AT_rich Low_complexity Low_complexity 1 23 0 2 1058 958 237 4 58 chr6 62013728 62013970 -87503067 + Lx5 LINE L1 6817 7045 -5 2 1058 287 308 55 0 chr6 62014361 62014452 -87502585 - PB1D7 SINE Alu -7 113 18 3 1058 1270 242 166 19 chr6 62014524 62014781 -87502256 + MTC LTR MaLR 1 261 -160 3 1058 381 22 0 0 chr6 62014781 62014827 -87502210 + (TTG)n Simple_repeat Simple_repeat 2 47 0 3 1058 1270 242 166 19 chr6 62014827 62014936 -87502101 + MTC LTR MaLR 262 420 -1 3 1058 22 70 0 0 chr6 62016277 62016320 -87500717 + AT_rich Low_complexity Low_complexity 1 43 0 3 1058 216 0 0 0 chr6 62016818 62016842 -87500195 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1058 238 293 93 17 chr6 62017381 62017499 -87499538 + MER3 DNA MER1_type 83 209 0 3 1058 282 29 0 0 chr6 62018260 62018295 -87498742 + (TAA)n Simple_repeat Simple_repeat 1 35 0 3 1058 5431 61 16 1 chr6 62018363 62019068 -87497969 - L1Md_F2 LINE L1 -2 6580 5866 3 1058 5609 68 2 8 chr6 62019069 62019870 -87497167 - L1Md_A LINE L1 -3897 1986 1192 3 1058 301 22 21 21 chr6 62019870 62019917 -87497120 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1058 4541 175 25 23 chr6 62019917 62020685 -87496352 - L1Md_A LINE L1 -5533 1191 420 3 1058 22 0 0 0 chr6 62020749 62020771 -87496266 + AT_rich Low_complexity Low_complexity 1 22 0 4 1058 186 43 0 0 chr6 62020910 62020933 -87496104 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 1058 330 26 0 0 chr6 62021623 62021662 -87495375 + (CATA)n Simple_repeat Simple_repeat 3 41 0 4 1058 23 0 0 0 chr6 62022085 62022108 -87494929 + AT_rich Low_complexity Low_complexity 1 23 0 4 1058 283 23 45 0 chr6 62022557 62022601 -87494436 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 4 1058 1441 235 78 7 chr6 62022693 62022989 -87494048 - Lx9 LINE L1 -1 7643 7321 4 1058 381 22 0 0 chr6 62022989 62023035 -87494002 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1058 1441 235 78 7 chr6 62023035 62023197 -87493840 - Lx9 LINE L1 -324 7320 7154 4 1058 661 255 9 113 chr6 62023209 62023439 -87493598 + L1_Rod LINE L1 1732 1937 -3910 4 1058 500 197 6 150 chr6 62023451 62023618 -87493419 + B1_Mus2 SINE Alu 5 147 0 4 1058 4893 169 7 41 chr6 62024168 62025177 -87491860 + L1_Mur2 LINE L1 4250 5224 -653 4 1058 4160 129 77 13 chr6 62025177 62025903 -87491134 + RLTR13C2 LTR ERVK 36 808 0 5 1058 697 22 22 0 chr6 62026603 62026694 -87490343 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 5 1058 1383 143 0 0 chr6 62026871 62027094 -87489943 - Lx2 LINE L1 0 6997 6775 5 1058 590 151 0 0 chr6 62027094 62027187 -87489850 - Lx2 LINE L1 -354 6643 6551 5 1058 21 36 0 0 chr6 62027231 62027259 -87489778 + AT_rich Low_complexity Low_complexity 1 28 0 5 1058 21 0 0 0 chr6 62028616 62028637 -87488400 + AT_rich Low_complexity Low_complexity 1 21 0 5 1058 623 129 7 39 chr6 62029477 62029630 -87487407 + (TCTCTG)n Simple_repeat Simple_repeat 1 148 0 5 1058 1258 319 72 55 chr6 62031087 62031783 -87485254 - Lx8 LINE L1 -519 6954 6247 5 1058 576 170 0 0 chr6 62031871 62031977 -87485060 + (TA)n Simple_repeat Simple_repeat 1 106 0 5 1058 727 340 51 27 chr6 62031991 62032517 -87484520 - L1_Mur3 LINE L1 -205 5675 5137 5 1058 1609 258 56 3 chr6 62032522 62032895 -87484142 - Lx5 LINE L1 -160 6890 6498 5 1058 225 196 0 0 chr6 62032896 62032942 -87484095 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 6 1058 457 316 25 6 chr6 62032957 62033173 -87483864 - Lx7 LINE L1 -609 5703 5492 6 1058 1634 119 63 0 chr6 62033177 62033429 -87483608 - Lx5 LINE L1 -552 6498 6231 6 1058 240 385 0 0 chr6 62034871 62034967 -87482070 - MIR SINE MIR -101 161 66 6 1058 623 224 36 22 chr6 62036040 62036177 -87480860 + RMER20B LTR ERVK 1 139 -488 6 1058 251 250 0 0 chr6 62036608 62036664 -87480373 + (TCTCTG)n Simple_repeat Simple_repeat 3 58 0 6 1058 490 41 14 14 chr6 62036668 62036742 -87480295 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 6 1058 1955 232 48 81 chr6 62037447 62037572 -87479465 - RMER1B Other Other -10 1056 941 6 1058 1098 55 7 7 chr6 62037572 62037719 -87479318 + B1_Mm SINE Alu 1 147 0 6 1058 1955 267 72 54 chr6 62037719 62038778 -87478259 - RMER1B Other Other -126 940 1 6 1058 6376 242 72 44 chr6 62039089 62041208 -87475829 - Lx7 LINE L1 -5 7691 5515 6 1058 26 30 0 0 chr6 62041253 62041286 -87475751 + AT_rich Low_complexity Low_complexity 1 33 0 7 1058 24 67 0 0 chr6 62041685 62041730 -87475307 + AT_rich Low_complexity Low_complexity 1 45 0 7 1058 3235 21 42 0 chr6 62041999 62042379 -87474658 - MTA_Mm LTR MaLR 0 396 1 7 1058 207 0 0 0 chr6 62043078 62043101 -87473936 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1058 214 357 0 41 chr6 62043138 62043211 -87473826 + PB1D9 SINE Alu 43 112 -8 7 1058 22 35 0 0 chr6 62043698 62043727 -87473310 + AT_rich Low_complexity Low_complexity 1 29 0 7 1058 218 343 39 19 chr6 62044665 62044769 -87472268 + PB1D9 SINE Alu 13 118 -2 7 1058 284 0 28 0 chr6 62044774 62044810 -87472227 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1058 1618 91 104 0 chr6 62046799 62047030 -87470007 - L1_Mus4 LINE L1 -409 6227 5973 7 1058 1254 165 7 76 chr6 62047020 62047134 -87469903 - L1_Mur2 LINE L1 -486 5391 5294 7 1058 1179 62 0 0 chr6 62047134 62047280 -87469757 - B1_Mm SINE Alu -1 146 1 8 1058 1254 165 7 76 chr6 62047280 62047466 -87469571 - L1_Mur2 LINE L1 -584 5293 5112 7 1058 21 0 0 0 chr6 62048542 62048563 -87468474 + AT_rich Low_complexity Low_complexity 1 21 0 8 1058 22 0 0 0 chr6 62048634 62048656 -87468381 + AT_rich Low_complexity Low_complexity 1 22 0 8 1058 21 0 0 0 chr6 62049079 62049100 -87467937 + AT_rich Low_complexity Low_complexity 1 21 0 8 1058 861 160 0 0 chr6 62049789 62049920 -87467117 - Lx LINE L1 -410 6244 6114 8 1058 1851 135 17 0 chr6 62049920 62050216 -87466821 + Lx2 LINE L1 6691 6991 -6 8 1058 540 84 0 0 chr6 62050343 62050414 -87466623 - L1_Mus1 LINE L1 -398 6169 6099 8 1058 2932 52 3 0 chr6 62050414 62050779 -87466258 + L1_Mus1 LINE L1 6201 6566 -1 8 1058 186 43 0 0 chr6 62050862 62050885 -87466152 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 1058 32 26 0 0 chr6 62051193 62051232 -87465805 + AT_rich Low_complexity Low_complexity 1 39 0 8 1058 27 0 0 0 chr6 62051631 62051658 -87465379 + AT_rich Low_complexity Low_complexity 1 27 0 8 1058 236 200 17 0 chr6 62053091 62053151 -87463886 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 9 1058 52 41 0 0 chr6 62053931 62054004 -87463033 + AT_rich Low_complexity Low_complexity 1 73 0 9 1058 561 296 62 29 chr6 62054942 62055151 -87461886 - B3 SINE B2 0 216 1 9 1058 239 157 20 0 chr6 62055786 62055837 -87461200 + CT-rich Low_complexity Low_complexity 6 57 0 9 1058 1171 70 17 23 chr6 62058193 62058368 -87458669 - L1Md_F2 LINE L1 -3 6579 6406 9 1058 252 0 0 0 chr6 62059063 62059091 -87457946 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1058 497 334 109 52 chr6 62059494 62060182 -87456855 + L1MCa LINE L1 743 1469 -5039 9 1058 6275 93 25 3 chr6 62060212 62061114 -87455923 + L1_Mus1 LINE L1 5671 6567 0 9 1058 24 77 0 0 chr6 62061804 62061856 -87455181 + AT_rich Low_complexity Low_complexity 1 52 0 9 1058 465 19 0 0 chr6 62062341 62062395 -87454642 + (TC)n Simple_repeat Simple_repeat 1 54 0 9 1058 5135 261 50 51 chr6 62062464 62065227 -87451810 - Lx7 LINE L1 -280 7416 4629 1 1058 287 150 0 16 chr6 62065248 62065309 -87451728 + CT-rich Low_complexity Low_complexity 1 60 0 1 1058 588 65 0 0 chr6 62065309 62065386 -87451651 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1058 376 246 245 5 chr6 62065386 62065578 -87451459 - Lx7 LINE L1 -1256 4624 4387 1 1058 1707 200 63 10 chr6 62065734 62066213 -87450824 - Lx7 LINE L1 -4085 1795 1292 1 1058 246 62 0 0 chr6 62066216 62066248 -87450789 + (CTTTG)n Simple_repeat Simple_repeat 1 32 0 1 1058 495 87 0 0 chr6 62066277 62066346 -87450691 + (TTTA)n Simple_repeat Simple_repeat 3 71 0 1 1058 881 216 70 52 chr6 62066361 62066590 -87450447 - Lx5 LINE L1 -54 6996 6764 1 1058 836 278 58 30 chr6 62066625 62067018 -87450019 - Lx7 LINE L1 -6483 1245 842 1 1058 43 76 0 0 chr6 62067798 62067890 -87449147 + AT_rich Low_complexity Low_complexity 1 92 0 1 1058 559 333 127 6 chr6 62068125 62068463 -87448574 - Lx8 LINE L1 -48 7425 7047 1 1058 5431 140 23 18 chr6 62069050 62069991 -87447046 - Lx3A LINE L1 -4 6977 6032 1 1058 21 36 0 0 chr6 62070373 62070401 -87446636 + AT_rich Low_complexity Low_complexity 1 28 0 1 1058 1790 260 53 2 chr6 62071105 62071521 -87445516 + Lx6 LINE L1 6942 7378 -82 1 1058 2254 58 24 0 chr6 62071806 62072101 -87444936 + L1Md_F3 LINE L1 6269 6570 -14 1 1058 182 252 165 18 chr6 62073841 62073950 -87443087 + L4 LINE RTE 1808 1932 -97 1 1058 374 325 19 53 chr6 62074055 62074318 -87442719 - Lx9 LINE L1 -171 7473 7220 1 1058 610 297 31 109 chr6 62074429 62074672 -87442365 - Lx7 LINE L1 -10 7450 7214 1 1058 1018 121 11 6 chr6 62074672 62074847 -87442190 + (GGAGAA)n Simple_repeat Simple_repeat 3 178 0 1 1058 1407 261 41 121 chr6 62074847 62075560 -87441477 - Lx7 LINE L1 -214 7482 6839 1 1058 561 258 261 23 chr6 62075569 62076068 -87440969 + Lx7 LINE L1 3577 4201 -1939 1 1058 440 270 171 77 chr6 62076356 62076770 -87440267 + Lx7 LINE L1 4299 4751 -1392 1 1058 336 311 30 18 chr6 62076807 62076971 -87440066 + Lx7 LINE L1 4883 5048 -1095 1 1058 282 316 42 0 chr6 62077196 62077291 -87439746 + BC1_Mm scRNA scRNA 2 100 -52 1 1058 228 98 32 32 chr6 62077379 62077442 -87439595 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1 1058 480 279 93 29 chr6 62077443 62077876 -87439161 + Lx7 LINE L1 5367 5876 -427 1 1058 186 291 0 0 chr6 62078080 62078135 -87438902 - MIR SINE MIR -25 237 183 1 1058 182 264 73 36 chr6 62078195 62078250 -87438787 - MIRb SINE MIR -187 81 25 1 1058 472 161 63 24 chr6 62078957 62079084 -87437953 - Lx3_Mus LINE L1 -4 7005 6874 1 1058 21 0 0 0 chr6 62079250 62079271 -87437766 + AT_rich Low_complexity Low_complexity 1 21 0 1 1058 494 254 0 7 chr6 62080332 62080471 -87436566 - Lx7 LINE L1 -400 7296 7159 1 1058 358 127 0 27 chr6 62080501 62080574 -87436463 + GA-rich Low_complexity Low_complexity 2 72 0 1 1058 1028 101 0 0 chr6 62080657 62080796 -87436241 + B1_Mus1 SINE Alu 5 143 -5 1 1058 276 30 0 0 chr6 62080800 62080833 -87436204 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 1058 216 345 169 32 chr6 62081368 62081706 -87435331 + L2 LINE L2 2625 3008 -411 1 1058 22 0 0 0 chr6 62082230 62082252 -87434785 + AT_rich Low_complexity Low_complexity 1 22 0 1 1058 248 260 24 61 chr6 62084016 62084098 -87432939 - B4A SINE B4 -207 85 7 1 1058 25 31 0 0 chr6 62084433 62084465 -87432572 + AT_rich Low_complexity Low_complexity 1 32 0 1 1058 433 271 84 26 chr6 62085371 62085598 -87431439 - L1M2 LINE L1 -529 5771 5532 1 1058 7192 115 16 1 chr6 62085686 62086727 -87430310 - Lx LINE L1 -2 6652 5596 1 1058 3265 134 75 2 chr6 62086740 62087271 -87429766 - Lx LINE L1 -1 6653 6084 1 1058 225 0 0 0 chr6 62088405 62088430 -87428607 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1058 297 0 0 0 chr6 62088443 62088476 -87428561 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1 1058 4477 89 9 26 chr6 62088482 62089140 -87427897 - L1Md_F2 LINE L1 -10 6572 5926 1 1058 28 0 0 0 chr6 62089154 62089182 -87427855 + AT_rich Low_complexity Low_complexity 1 28 0 1 1058 8381 26 1 0 chr6 62089182 62090663 -87426374 - L1Md_A LINE L1 -2 6580 5099 1 1058 21 0 0 0 chr6 62091936 62091957 -87425080 + AT_rich Low_complexity Low_complexity 1 21 0 1 1058 288 321 57 65 chr6 62092011 62092283 -87424754 - MLT1C LTR MaLR -23 444 121 1 1058 1058 316 34 22 chr6 62092329 62092740 -87424297 - Lx7 LINE L1 -434 7262 6847 1 1058 28 29 0 0 chr6 62092951 62092986 -87424051 + AT_rich Low_complexity Low_complexity 1 35 0 1 1058 4812 208 55 21 chr6 62092986 62094462 -87422575 - Lx5 LINE L1 0 7050 5462 1 1058 2090 177 8 3 chr6 62094451 62094831 -87422206 + Lx5 LINE L1 5056 5437 -440 1 1058 342 0 0 0 chr6 62094945 62094983 -87422054 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1058 30315 130 17 12 chr6 62095211 62101495 -87415542 + L1Md_F2 LINE L1 239 6567 -15 1 1058 300 102 0 0 chr6 62101933 62101982 -87415055 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 1 1058 1062 144 0 0 chr6 62101982 62102162 -87414875 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1058 792 177 11 6 chr6 62102163 62102339 -87414698 + CT-rich Low_complexity Low_complexity 2 178 0 1 1058 2119 98 6 59 chr6 62103723 62104060 -87412977 - ORR1A2 LTR MaLR -8 319 1 1 1058 225 65 0 0 chr6 62104301 62104332 -87412705 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1 1058 516 114 22 22 chr6 62105150 62105284 -87411753 + (TA)n Simple_repeat Simple_repeat 1 134 0 1 1058 7071 111 11 30 chr6 62105596 62107105 -87409932 + L1_Mus3 LINE L1 5157 6638 0 1 1058 180 111 0 0 chr6 62108760 62108787 -87408250 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1058 217 167 49 16 chr6 62109253 62109314 -87407723 + (TGAA)n Simple_repeat Simple_repeat 2 64 0 1 1058 1468 162 199 3 chr6 62111530 62111852 -87405185 + ORR1B1 LTR MaLR 1 385 -9 1 1058 465 34 0 0 chr6 62113035 62113094 -87403943 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1058 324 384 19 26 chr6 62113097 62113252 -87403785 - RSINE1 SINE B4 -9 156 3 1 1058 26 0 0 0 chr6 62113379 62113405 -87403632 + AT_rich Low_complexity Low_complexity 1 26 0 1 1058 29 60 0 0 chr6 62113512 62113562 -87403475 + AT_rich Low_complexity Low_complexity 1 50 0 1 1058 24 77 0 0 chr6 62113604 62113656 -87403381 + AT_rich Low_complexity Low_complexity 1 52 0 1 1058 269 297 70 94 chr6 62113874 62114045 -87402992 - MLT1A0 LTR MaLR -69 296 130 1 1058 1047 314 32 11 chr6 62114465 62114593 -87402444 - MTD LTR MaLR -64 355 223 1 1058 6308 59 11 7 chr6 62114593 62115409 -87401628 - L1Md_F2 LINE L1 0 6582 5764 1 1058 1047 314 32 11 chr6 62115409 62115628 -87401409 - MTD LTR MaLR -197 222 2 1 1058 216 111 0 0 chr6 62115741 62115777 -87401260 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1058 333 285 78 29 chr6 62115782 62115884 -87401153 - RSINE1 SINE B4 -34 131 24 1 1058 212 122 0 24 chr6 62115916 62115958 -87401079 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 1 1058 1074 83 0 14 chr6 62116114 62116261 -87400776 + B1_Mus1 SINE Alu 4 148 0 1 1058 21 0 0 0 chr6 62117038 62117059 -87399978 + AT_rich Low_complexity Low_complexity 1 21 0 1 1058 207 0 0 0 chr6 62117200 62117223 -87399814 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1058 372 133 0 0 chr6 62117362 62117422 -87399615 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1058 35 54 0 0 chr6 62117428 62117484 -87399553 + AT_rich Low_complexity Low_complexity 1 56 0 1 1058 186 103 0 0 chr6 62119206 62119235 -87397802 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1058 474 65 0 0 chr6 62119409 62119471 -87397566 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 1 1058 369 0 0 0 chr6 62120067 62120108 -87396929 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1 1058 225 204 18 18 chr6 62120238 62120288 -87396749 + GA-rich Low_complexity Low_complexity 3 53 0 1 1058 823 9 43 0 chr6 62120288 62120404 -87396633 + (GGGAGA)n Simple_repeat Simple_repeat 2 122 0 1 1058 527 0 0 16 chr6 62120466 62120530 -87396507 + (TTG)n Simple_repeat Simple_repeat 2 64 0 1 1058 516 16 0 0 chr6 62120708 62120769 -87396268 + (CAAAC)n Simple_repeat Simple_repeat 2 62 0 1 1058 216 0 0 0 chr6 62120772 62120796 -87396241 + (CACAA)n Simple_repeat Simple_repeat 1 24 0 1 1058 8639 16 1 0 chr6 62122054 62123284 -87393753 - L1Md_A LINE L1 0 6582 5351 1 1058 2332 4 0 0 chr6 62123282 62123544 -87393493 + L1_Mm LINE L1 3864 4125 -1758 1 1058 201 108 54 0 chr6 62123704 62123741 -87393296 + (TATG)n Simple_repeat Simple_repeat 1 39 0 1 1058 2241 204 39 39 chr6 62124293 62124854 -87392183 + RLTR31_Mm LTR ERVK 1 561 0 1 1058 822 197 43 5 chr6 62125037 62125221 -87391816 + B2_Mm2 SINE B2 4 194 -1 1 1058 284 306 44 39 chr6 62125967 62126147 -87390890 - Lx8 LINE L1 -10 7463 7283 1 1058 903 208 40 5 chr6 62126147 62126345 -87390692 + Lx2 LINE L1 6792 6996 -1 1 1058 257 330 60 0 chr6 62126351 62126451 -87390586 - Lx8 LINE L1 -246 7227 7122 1 1058 23 0 0 0 chr6 62126488 62126511 -87390526 + AT_rich Low_complexity Low_complexity 1 23 0 1 1058 934 327 78 13 chr6 62126511 62126907 -87390130 - Lx8 LINE L1 -355 7118 6697 1 1058 410 318 69 11 chr6 62126947 62127122 -87389915 + Lx8 LINE L1 6927 7111 -362 1 1058 1064 332 14 8 chr6 62127123 62127493 -87389544 - Lx8 LINE L1 -626 6847 6476 1 1059 2904 160 22 20 chr6 62128536 62129045 -87387992 + Lx2B LINE L1 6491 7000 0 1 1059 405 0 0 0 chr6 62129247 62129292 -87387745 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1059 672 274 34 19 chr6 62129356 62129561 -87387476 - B3 SINE B2 -5 211 4 1 1059 259 302 57 0 chr6 62129919 62130025 -87387012 - Lx7 LINE L1 0 7696 7585 1 1059 23 0 0 0 chr6 62130081 62130104 -87386933 + AT_rich Low_complexity Low_complexity 1 23 0 1 1059 21 0 0 0 chr6 62131317 62131338 -87385699 + AT_rich Low_complexity Low_complexity 1 21 0 1 1059 38445 42 2 13 chr6 62132195 62138343 -87378694 - L1Md_T LINE L1 -3 6579 505 1 1059 22 35 0 0 chr6 62139150 62139179 -87377858 + AT_rich Low_complexity Low_complexity 1 29 0 1 1059 21 0 0 0 chr6 62139327 62139348 -87377689 + AT_rich Low_complexity Low_complexity 1 21 0 1 1059 909 110 0 0 chr6 62139403 62139530 -87377507 + B1_Mur4 SINE Alu 2 128 -22 1 1059 276 30 0 0 chr6 62139530 62139563 -87377474 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2 1059 238 333 66 16 chr6 62139639 62139761 -87377276 + MLT1A1 LTR MaLR 269 396 -12 2 1059 791 237 111 38 chr6 62140113 62140476 -87376561 - MT2B LTR ERVL -61 540 1 2 1059 475 322 18 16 chr6 62140614 62140901 -87376136 - L1MA6 LINE L1 -271 6029 5738 2 1059 22 0 0 73 chr6 62141125 62141166 -87375871 + AT_rich Low_complexity Low_complexity 1 38 0 2 1059 354 270 129 43 chr6 62141284 62141493 -87375544 - L1MCb LINE L1 -4877 1168 942 2 1059 850 244 45 32 chr6 62142961 62143181 -87373856 - Lx7 LINE L1 -520 7176 6954 2 1059 809 257 96 57 chr6 62143204 62143531 -87373506 + Lx7 LINE L1 7221 7546 -150 2 1059 1823 138 24 3 chr6 62143531 62143828 -87373209 - Lx2 LINE L1 -2 6995 6693 2 1059 809 257 96 57 chr6 62143828 62143958 -87373079 + Lx7 LINE L1 7547 7695 -1 2 1059 411 157 0 0 chr6 62144645 62144753 -87372284 + A-rich Low_complexity Low_complexity 2 109 0 2 1059 21 0 0 0 chr6 62144945 62144966 -87372071 + AT_rich Low_complexity Low_complexity 1 21 0 2 1059 571 137 41 20 chr6 62145346 62145486 -87371551 - L1_Mus3 LINE L1 -23 6615 6494 2 1059 318 50 0 0 chr6 62147561 62147601 -87369436 + (GGA)n Simple_repeat Simple_repeat 1 40 0 2 1059 369 0 0 0 chr6 62147601 62147642 -87369395 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1059 2460 258 53 42 chr6 62149899 62150821 -87366216 + L1_Rod LINE L1 4756 5687 -160 2 1059 378 0 0 0 chr6 62151074 62151116 -87365921 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1059 248 222 0 18 chr6 62152567 62152622 -87364415 + CT-rich Low_complexity Low_complexity 1 54 0 2 1059 450 0 0 0 chr6 62152637 62152687 -87364350 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1059 31 44 0 0 chr6 62153477 62153522 -87363515 + AT_rich Low_complexity Low_complexity 1 45 0 2 1059 189 0 0 0 chr6 62155614 62155635 -87361402 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1059 953 83 68 0 chr6 62155746 62155878 -87361159 + B1_Mm SINE Alu 1 141 -6 2 1059 279 0 0 0 chr6 62155880 62155911 -87361126 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1059 1472 124 52 4 chr6 62156203 62156454 -87360583 - L1_Mus4 LINE L1 -8 6628 6366 2 1059 208 328 0 0 chr6 62156461 62156522 -87360515 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1059 30 45 0 0 chr6 62156721 62156765 -87360272 + AT_rich Low_complexity Low_complexity 1 44 0 2 1059 519 323 36 31 chr6 62157019 62157214 -87359823 + B3A SINE B2 2 197 -1 2 1059 465 230 17 17 chr6 62158096 62158211 -87358826 + ORR1D2 LTR MaLR 255 369 -1 2 1059 207 146 0 0 chr6 62158869 62158910 -87358127 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1059 4727 49 2 3 chr6 62158921 62159510 -87357527 - L1Md_F2 LINE L1 -12 6570 5983 2 1059 582 162 0 0 chr6 62159510 62159609 -87357428 + L1_Mm LINE L1 3744 3842 -2041 2 1059 361 336 68 60 chr6 62159696 62159962 -87357075 - RLTR6-int LTR ERV1 -6089 1689 1422 2 1059 1202 163 5 0 chr6 62160411 62160620 -87356417 - Lx9 LINE L1 -649 6995 6786 2 1059 235 269 0 29 chr6 62160701 62160770 -87356267 - L1MC LINE L1 -1969 4177 4111 2 1059 333 82 0 0 chr6 62160930 62160979 -87356058 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 2 1059 1058 104 14 0 chr6 62160980 62161124 -87355913 - B1_Mus1 SINE Alu -2 146 1 2 1059 309 290 95 92 chr6 62161163 62162298 -87354739 - L1MC LINE L1 -2222 3924 2786 2 1059 186 103 0 0 chr6 62163710 62163739 -87353298 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1059 192 241 86 0 chr6 62165402 62165460 -87351577 - L2 LINE L2 -2640 779 717 2 1059 11940 151 21 9 chr6 62165643 62167012 -87350025 - Lx LINE L1 -5 6649 5258 2 1059 2789 109 50 38 chr6 62167012 62167488 -87349549 - RLTR45 LTR ERVK 0 482 1 2 1059 11940 185 30 30 chr6 62167488 62169441 -87347596 - Lx LINE L1 -626 5257 3310 2 1059 563 299 124 16 chr6 62169870 62170176 -87346861 - RMER5 LTR ERV1 -5 529 191 2 1059 210 191 0 0 chr6 62171007 62171054 -87345983 + T-rich Low_complexity Low_complexity 1 47 0 2 1059 21 0 0 0 chr6 62171343 62171364 -87345673 + AT_rich Low_complexity Low_complexity 1 21 0 2 1059 3827 123 22 8 chr6 62171563 62172163 -87344874 + RLTR13C1 LTR ERVK 3 610 -373 2 1059 591 322 0 25 chr6 62174299 62174503 -87342534 - B3 SINE B2 -14 202 4 2 1059 28 0 0 0 chr6 62174645 62174673 -87342364 + AT_rich Low_complexity Low_complexity 1 28 0 2 1059 808 230 130 0 chr6 62175783 62175983 -87341054 - URR1A DNA MER1_type 0 226 1 2 1059 654 296 95 16 chr6 62176755 62176944 -87340093 - B3 SINE B2 -6 210 7 2 1059 213 39 0 0 chr6 62177103 62177129 -87339908 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2 1059 4859 133 35 14 chr6 62177129 62177932 -87339105 - Lx LINE L1 -14 6640 5821 2 1059 853 70 0 0 chr6 62177932 62178046 -87338991 - L1_Mus4 LINE L1 -909 5727 5614 2 1059 1944 97 10 0 chr6 62178050 62178338 -87338699 + MusHAL1 LINE L1 1505 1795 -917 2 1059 1536 102 18 0 chr6 62178383 62178608 -87338429 + L1_Mus1 LINE L1 6339 6567 0 2 1059 245 221 26 111 chr6 62179735 62179852 -87337185 + Lx8 LINE L1 7175 7281 -192 2 1059 5050 191 34 8 chr6 62179974 62181019 -87336018 - L1_Mur2 LINE L1 -643 5519 4416 2 1059 230 0 33 0 chr6 62181865 62181895 -87335142 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1059 1273 60 6 0 chr6 62181968 62182136 -87334901 - L1Md_T LINE L1 -1 6581 6413 2 1059 256 225 97 42 chr6 62182845 62182989 -87334048 - Lx9 LINE L1 0 7644 7493 2 1059 266 308 31 0 chr6 62184042 62184107 -87332930 - ID SINE ID -135 89 23 2 1059 22 0 0 0 chr6 62184156 62184178 -87332859 + AT_rich Low_complexity Low_complexity 1 22 0 2 1059 464 265 49 2 chr6 62185072 62185220 -87331817 + B3A SINE B2 3 157 -41 2 1059 5595 72 5 1 chr6 62185238 62185979 -87331058 - L1_Mus1 LINE L1 0 6567 5824 2 1059 446 391 99 87 chr6 62186766 62187320 -87329717 - MLT-int LTR MaLR -460 1275 715 2 1059 642 153 36 0 chr6 62187359 62187496 -87329541 + GA-rich Low_complexity Low_complexity 3 144 0 2 1059 314 336 93 23 chr6 62187496 62187712 -87329325 - MLT-int LTR MaLR -1015 720 490 2 1059 2765 288 122 38 chr6 62187721 62187831 -87329206 - Lx9 LINE L1 -23 7621 7487 2 1059 660 48 0 0 chr6 62187831 62187915 -87329122 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 1059 2765 288 122 38 chr6 62187915 62189145 -87327892 - Lx9 LINE L1 -158 7486 6170 2 1059 352 350 162 28 chr6 62189355 62189741 -87327296 - MLT-int LTR MaLR -1269 466 29 2 1059 687 323 16 0 chr6 62190885 62191071 -87325966 - B3 SINE B2 -27 189 1 2 1059 750 240 50 10 chr6 62191517 62191719 -87325318 - B3 SINE B2 -6 210 1 2 1059 12324 104 8 38 chr6 62192646 62194638 -87322399 + L1_Mur1 LINE L1 3643 5575 -311 2 1059 462 18 0 0 chr6 62194639 62194694 -87322343 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2 1059 299 85 0 21 chr6 62195003 62195051 -87321986 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1059 32 43 0 0 chr6 62197377 62197423 -87319614 + AT_rich Low_complexity Low_complexity 1 46 0 2 1059 30 83 0 0 chr6 62197495 62197567 -87319470 + AT_rich Low_complexity Low_complexity 1 72 0 2 1059 1264 244 144 14 chr6 62197569 62198014 -87319023 - Lx2B LINE L1 -4 6996 6494 2 1059 8420 147 19 20 chr6 62198251 62199866 -87317171 + Lx2 LINE L1 5387 6997 0 2 1059 455 139 0 0 chr6 62201856 62201928 -87315109 + L1_Mur2 LINE L1 3395 3466 -2411 2 1059 351 275 78 52 chr6 62203799 62203991 -87313046 + MLT1A0 LTR MaLR 126 322 -43 2 1059 1254 98 22 0 chr6 62204447 62204630 -87312407 + B2_Mm1t SINE B2 2 188 -5 2 1059 28 86 0 0 chr6 62205241 62205311 -87311726 + AT_rich Low_complexity Low_complexity 1 70 0 2 1059 1165 171 11 56 chr6 62205324 62205590 -87311447 - Lx7 LINE L1 -71 7625 7372 2 1059 458 121 0 0 chr6 62205591 62205657 -87311380 - Lx7 LINE L1 -711 6985 6920 2 1059 1240 265 96 28 chr6 62206163 62206517 -87310520 - MTE2b LTR MaLR 0 379 2 2 1059 1376 344 128 55 chr6 62206510 62206932 -87310105 - MTE2b-int LTR MaLR 0 1580 1112 2 1059 681 95 0 0 chr6 62206932 62207048 -87309989 + (TC)n Simple_repeat Simple_repeat 1 116 0 2 1059 1376 344 128 55 chr6 62207048 62207575 -87309462 - MTE2b-int LTR MaLR -469 1111 561 2 1059 630 0 0 0 chr6 62207678 62207748 -87309289 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1059 346 368 57 43 chr6 62207748 62207978 -87309059 - B4A SINE B4 -58 234 2 2 1059 1292 315 78 22 chr6 62207978 62208527 -87308510 - MTE2b-int LTR MaLR -1000 580 1 2 1059 703 343 83 17 chr6 62208532 62208882 -87308155 - MTE2b LTR MaLR -5 374 2 2 1059 325 189 11 11 chr6 62209323 62209414 -87307623 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 1059 236 330 41 31 chr6 62209538 62209635 -87307402 + Tigger7 DNA MER2_type 17 114 -2377 2 1059 212 148 48 32 chr6 62209646 62209709 -87307328 + (TTA)n Simple_repeat Simple_repeat 2 65 0 2 1059 186 348 85 25 chr6 62212468 62212586 -87304451 - MIR SINE MIR -115 147 23 2 1059 240 59 0 0 chr6 62215820 62215854 -87301183 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1059 417 39 0 0 chr6 62216807 62216858 -87300179 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1059 1684 155 43 43 chr6 62217429 62217753 -87299284 - ORR1A3 LTR MaLR -2 324 1 2 1059 2912 72 2 8 chr6 62218474 62218867 -87298170 + L1_Mus2 LINE L1 6176 6566 0 2 1059 362 295 8 15 chr6 62219974 62220108 -87296929 + (CA)n Simple_repeat Simple_repeat 2 134 0 2 1059 504 89 0 0 chr6 62220624 62220703 -87296334 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1059 311 311 69 20 chr6 62220813 62221016 -87296021 + Lx7 LINE L1 7483 7695 -1 2 1059 23 54 0 0 chr6 62221941 62221978 -87295059 + AT_rich Low_complexity Low_complexity 1 37 0 2 1059 397 355 31 61 chr6 62222234 62222528 -87294509 - Lx9 LINE L1 -411 7233 6949 2 1059 931 280 55 25 chr6 62222593 62223117 -87293920 - L1M3 LINE L1 -1204 4936 4397 2 1059 1852 97 29 7 chr6 62223161 62223441 -87293596 - L1_Mus3 LINE L1 -8 6630 6345 2 1059 226 224 58 12 chr6 62223472 62223558 -87293479 - L1_Mur1 LINE L1 -1545 4341 4252 2 1059 728 296 68 28 chr6 62223633 62224165 -87292872 - L1_Rod LINE L1 -4035 1812 1260 2 1059 290 263 82 60 chr6 62224212 62224394 -87292643 - L1_Rod LINE L1 -6413 1195 1010 2 1059 1048 89 14 7 chr6 62225073 62225220 -87291817 + B1_Mus1 SINE Alu 1 148 0 3 1059 192 97 0 0 chr6 62225222 62225253 -87291784 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 3 1059 2674 190 88 54 chr6 62227085 62227701 -87289336 + RMER13B LTR ERVK 5 641 -267 3 1059 477 0 0 0 chr6 62227725 62227778 -87289259 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1059 300 200 0 128 chr6 62227798 62227884 -87289153 + HAL1-3A_ME LINE L1 1975 2049 -809 3 1059 333 100 0 0 chr6 62227884 62227934 -87289103 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1059 350 107 89 51 chr6 62228096 62228175 -87288862 + L1MCa LINE L1 1882 1963 -4545 3 1059 548 62 12 0 chr6 62228210 62228291 -87288746 + (TG)n Simple_repeat Simple_repeat 2 83 0 3 1059 241 143 89 0 chr6 62228517 62228573 -87288464 - L1Md_T LINE L1 -7 6575 6515 3 1059 409 60 14 29 chr6 62228576 62228645 -87288392 + L1Md_F2 LINE L1 6503 6570 -12 3 1059 22 0 0 0 chr6 62229385 62229407 -87287630 + AT_rich Low_complexity Low_complexity 1 22 0 3 1059 4825 145 159 5 chr6 62229504 62230436 -87286601 - Lx3_Mus LINE L1 0 7009 5935 3 1059 285 29 0 0 chr6 62230490 62230524 -87286513 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1059 405 0 0 0 chr6 62230524 62230568 -87286469 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1059 277 365 39 0 chr6 62230609 62230713 -87286324 + MER5A DNA MER1_type 7 114 -75 3 1059 181 227 0 43 chr6 62232298 62232344 -87284693 + L3 LINE CR1 2281 2324 -2165 3 1059 6749 108 17 28 chr6 62232888 62234008 -87283029 - L1_Mur1 LINE L1 -1483 4403 3296 3 1059 34 55 0 0 chr6 62234474 62234529 -87282508 + AT_rich Low_complexity Low_complexity 1 55 0 3 1059 28 0 0 0 chr6 62234732 62234760 -87282277 + AT_rich Low_complexity Low_complexity 1 28 0 3 1059 5530 48 0 4 chr6 62234814 62235498 -87281539 - L1Md_F2 LINE L1 -170 6412 5732 3 1059 333 0 0 0 chr6 62236035 62236072 -87280965 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1059 25 31 0 0 chr6 62236317 62236349 -87280688 + AT_rich Low_complexity Low_complexity 1 32 0 3 1059 2210 224 26 16 chr6 62236936 62237440 -87279597 - RMER5 LTR ERV1 -9 525 17 3 1059 365 354 56 11 chr6 62238147 62238327 -87278710 + MIR SINE MIR 1 188 -74 3 1059 14449 25 2 0 chr6 62238688 62240395 -87276642 + L1Md_T LINE L1 3877 5586 -297 3 1059 8743 18 0 1 chr6 62240395 62241392 -87275645 + L1Md_T LINE L1 5587 6582 0 3 1059 32 0 0 0 chr6 62242220 62242252 -87274785 + AT_rich Low_complexity Low_complexity 1 32 0 3 1059 663 304 47 14 chr6 62242360 62242589 -87274448 - B4A SINE B4 -53 239 5 3 1059 1059 101 0 0 chr6 62243004 62243142 -87273895 + B1_Mus1 SINE Alu 1 138 -10 3 1059 210 37 0 0 chr6 62243142 62243169 -87273868 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1059 23 0 0 0 chr6 62243228 62243251 -87273786 + AT_rich Low_complexity Low_complexity 1 23 0 3 1059 21 0 0 0 chr6 62243272 62243293 -87273744 + AT_rich Low_complexity Low_complexity 1 21 0 3 1059 206 192 0 19 chr6 62244653 62244706 -87272331 + G-rich Low_complexity Low_complexity 1 52 0 3 1059 369 313 56 53 chr6 62244800 62245121 -87271916 - L1_Rod LINE L1 -357 5490 5169 3 1059 25 0 0 0 chr6 62245217 62245242 -87271795 + AT_rich Low_complexity Low_complexity 1 25 0 3 1059 1809 174 24 3 chr6 62245250 62245578 -87271459 - Lx3A LINE L1 -7 6974 6640 3 1059 27 92 0 0 chr6 62246089 62246165 -87270872 + AT_rich Low_complexity Low_complexity 1 76 0 3 1059 510 17 0 0 chr6 62246986 62247045 -87269992 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1059 254 159 0 0 chr6 62247045 62247098 -87269939 - Lx7 LINE L1 -524 5776 5690 3 1059 203 171 0 0 chr6 62247102 62247143 -87269894 + T-rich Low_complexity Low_complexity 1 41 0 3 1059 31 44 0 0 chr6 62247346 62247391 -87269646 + AT_rich Low_complexity Low_complexity 1 45 0 3 1059 343 352 64 17 chr6 62247604 62247899 -87269138 + L1M4 LINE L1 5513 5821 -357 3 1059 236 200 138 0 chr6 62248075 62248140 -87268897 - B3A SINE B2 -124 74 1 3 1059 413 340 14 0 chr6 62248140 62248269 -87268768 + B3 SINE B2 76 206 -10 3 1059 4812 151 45 17 chr6 62248952 62249843 -87267194 - Lx2A1 LINE L1 0 7008 6093 3 1059 401 306 24 0 chr6 62250670 62250794 -87266243 + B3A SINE B2 2 128 -70 3 1059 31 44 0 0 chr6 62250966 62251011 -87266026 + AT_rich Low_complexity Low_complexity 1 45 0 3 1059 3934 317 107 49 chr6 62251034 62252684 -87264353 + Tigger1 DNA MER2_type 40 1798 -620 3 1059 426 269 35 9 chr6 62252684 62252800 -87264237 - PB1D7 SINE Alu 0 120 2 3 1059 3934 317 107 49 chr6 62252800 62253297 -87263740 + Tigger1 DNA MER2_type 1799 2310 -108 3 1059 496 286 50 0 chr6 62253295 62253435 -87263602 - B1F2 SINE Alu -2 147 1 3 1059 284 348 22 0 chr6 62253860 62253949 -87263088 - MLT1A0 LTR MaLR -11 354 264 3 1059 182 37 37 0 chr6 62254440 62254467 -87262570 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1059 298 308 22 11 chr6 62254660 62254752 -87262285 - PB1D7 SINE Alu -3 117 25 3 1059 635 320 111 34 chr6 62255045 62255307 -87261730 - MTEa LTR MaLR -97 282 1 3 1059 4612 109 102 3 chr6 62255896 62256605 -87260432 + L1_Mus3 LINE L1 5833 6611 -27 3 1059 897 91 52 15 chr6 62256606 62256740 -87260297 + B1_Mm SINE Alu 2 140 -7 3 1059 450 163 152 22 chr6 62257005 62257143 -87259894 + L1MC1 LINE L1 5777 5932 -401 3 1059 229 263 53 124 chr6 62257217 62257330 -87259707 + B1_Mur4 SINE Alu 2 106 -44 3 1059 320 282 89 77 chr6 62257574 62257743 -87259294 - MER34A1 LTR ERV1 -389 182 12 3 1059 4482 88 20 5 chr6 62258136 62258775 -87258262 - L1_Mus3 LINE L1 -1 6637 5989 3 1060 1499 207 98 6 chr6 62259912 62260248 -87256789 + ORR1B2 LTR MaLR 1 367 0 3 1060 750 78 0 0 chr6 62260427 62260529 -87256508 + (TA)n Simple_repeat Simple_repeat 1 102 0 3 1060 492 18 0 0 chr6 62260844 62260901 -87256136 + (TTA)n Simple_repeat Simple_repeat 2 58 0 3 1060 505 278 48 64 chr6 62260936 62261130 -87255907 - RLTR18 LTR ERVK -324 188 3 3 1060 315 0 0 0 chr6 62261130 62261165 -87255872 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1060 558 365 51 27 chr6 62261648 62261904 -87255133 + B4A SINE B4 2 263 -29 3 1060 265 261 58 0 chr6 62262117 62262186 -87254851 + MT2A LTR ERVL 1 73 -460 3 1060 1142 193 0 10 chr6 62262185 62262394 -87254643 - URR1A DNA MER1_type -16 210 4 3 1060 22 0 0 0 chr6 62263062 62263084 -87253953 + AT_rich Low_complexity Low_complexity 1 22 0 3 1060 1462 53 0 59 chr6 62263651 62263870 -87253167 + L1Md_F3 LINE L1 6377 6582 -2 3 1060 686 268 165 46 chr6 62264496 62264824 -87252213 - ORR1D2 LTR MaLR -3 367 1 3 1060 263 50 50 0 chr6 62264905 62264945 -87252092 + (TATG)n Simple_repeat Simple_repeat 2 43 0 3 1060 927 109 0 0 chr6 62265085 62265223 -87251814 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 3 1060 1496 251 83 9 chr6 62265230 62265653 -87251384 - Lx5 LINE L1 -23 7027 6574 3 1060 27 29 0 0 chr6 62265829 62265863 -87251174 + AT_rich Low_complexity Low_complexity 1 34 0 3 1060 1179 117 0 0 chr6 62266649 62266829 -87250208 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1060 243 103 0 0 chr6 62266844 62266883 -87250154 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 1060 270 0 0 0 chr6 62266886 62266916 -87250121 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1060 372 322 42 17 chr6 62266940 62267060 -87249977 - RSINE1 SINE B4 -38 127 5 3 1060 203 211 0 19 chr6 62267495 62267526 -87249511 + (CAA)n Simple_repeat Simple_repeat 2 32 0 3 1060 225 65 0 0 chr6 62267526 62267557 -87249480 + (CCA)n Simple_repeat Simple_repeat 1 31 0 3 1060 203 211 0 19 chr6 62267557 62267578 -87249459 + (CAA)n Simple_repeat Simple_repeat 3 23 0 3 1060 390 42 0 0 chr6 62268419 62268467 -87248570 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 3 1060 1321 50 0 22 chr6 62268469 62268653 -87248384 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1060 22 35 0 0 chr6 62269327 62269356 -87247681 + AT_rich Low_complexity Low_complexity 1 29 0 3 1060 1503 278 107 24 chr6 62269581 62270067 -87246970 - L1MCa LINE L1 -2385 3936 3397 3 1060 234 0 0 0 chr6 62270067 62270093 -87246944 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1060 1503 278 107 24 chr6 62270093 62270653 -87246384 - L1MCa LINE L1 -2925 3396 2803 3 1060 948 18 0 0 chr6 62270837 62270947 -87246090 + (GA)n Simple_repeat Simple_repeat 2 111 0 3 1060 752 207 14 0 chr6 62270987 62271127 -87245910 + B1_Mur3 SINE Alu 2 143 -6 3 1060 478 298 56 40 chr6 62271170 62271474 -87245563 - L1MCa LINE L1 -4703 1805 1497 3 1060 782 314 117 73 chr6 62271557 62272487 -87244550 - L1MCa LINE L1 -5136 1372 402 3 1060 5530 59 0 1 chr6 62272561 62273261 -87243776 + L1Md_F2 LINE L1 4888 5586 -297 3 1060 7201 73 21 3 chr6 62273261 62274223 -87242814 + L1Md_F2 LINE L1 5587 6565 -17 3 1060 201 171 0 0 chr6 62274224 62274259 -87242778 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 1060 294 372 101 4 chr6 62274310 62274537 -87242500 - L1MCa LINE L1 -6251 257 9 3 1060 25 0 0 0 chr6 62274922 62274947 -87242090 + AT_rich Low_complexity Low_complexity 1 25 0 3 1060 3808 267 68 25 chr6 62275496 62276617 -87240420 - Lx6 LINE L1 -10 7450 6282 3 1060 24 0 0 0 chr6 62276625 62276649 -87240388 + AT_rich Low_complexity Low_complexity 1 24 0 3 1060 3455 74 13 2 chr6 62278091 62278552 -87238485 - L1_Mus2 LINE L1 0 6566 6101 3 1060 243 125 0 0 chr6 62279525 62279565 -87237472 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1060 757 279 61 80 chr6 62279958 62280164 -87236873 - Lx9 LINE L1 -1 7643 7464 3 1060 387 41 0 0 chr6 62280164 62280213 -87236824 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1060 757 279 61 80 chr6 62280213 62280532 -87236505 - Lx9 LINE L1 -181 7463 7128 3 1060 1093 187 14 5 chr6 62280569 62280779 -87236258 + Lx9 LINE L1 6788 6999 -645 3 1060 2245 261 116 64 chr6 62281245 62281817 -87235220 - L1Md_A LINE L1 -280 6693 6085 3 1060 195 42 0 0 chr6 62281817 62281841 -87235196 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1060 2245 261 116 64 chr6 62281841 62281946 -87235091 - L1Md_A LINE L1 -889 6084 5950 3 1060 5254 57 0 6 chr6 62281946 62282613 -87234424 - L1Md_T LINE L1 0 6582 5920 4 1060 1598 60 0 18 chr6 62282611 62282833 -87234204 + L1Md_A LINE L1 6365 6582 0 4 1060 25926 28 2 1 chr6 62282833 62286008 -87231029 - L1Md_A LINE L1 -1024 5949 2779 3 1060 2794 111 16 2 chr6 62286006 62286450 -87230587 - L1_Mur1 LINE L1 -635 5251 4802 4 1060 2423 122 0 3 chr6 62286448 62286826 -87230211 + L1_Mur1 LINE L1 4408 4784 -1102 4 1060 21 107 0 0 chr6 62287056 62287140 -87229897 + AT_rich Low_complexity Low_complexity 1 84 0 4 1060 464 59 47 0 chr6 62287164 62287249 -87229788 + (TA)n Simple_repeat Simple_repeat 2 90 0 4 1060 662 321 82 12 chr6 62287869 62288112 -87228925 + B4 SINE B4 9 268 -24 4 1060 252 0 0 0 chr6 62288213 62288241 -87228796 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1060 22 0 0 0 chr6 62288703 62288725 -87228312 + AT_rich Low_complexity Low_complexity 1 22 0 4 1060 350 308 126 48 chr6 62288908 62289075 -87227962 - B3 SINE B2 -36 180 1 4 1060 388 35 35 0 chr6 62289455 62289513 -87227524 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1060 396 0 0 0 chr6 62289518 62289562 -87227475 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1060 25 51 0 0 chr6 62291735 62291774 -87225263 + AT_rich Low_complexity Low_complexity 1 39 0 4 1060 22 35 0 0 chr6 62293041 62293070 -87223967 + AT_rich Low_complexity Low_complexity 1 29 0 4 1060 22 56 0 0 chr6 62293256 62293292 -87223745 + AT_rich Low_complexity Low_complexity 1 36 0 4 1060 36 40 0 0 chr6 62294021 62294071 -87222966 + AT_rich Low_complexity Low_complexity 1 50 0 4 1060 842 208 121 57 chr6 62294183 62294464 -87222573 + Lx9 LINE L1 7346 7644 0 4 1060 483 329 69 13 chr6 62294497 62294762 -87222275 + B4A SINE B4 10 288 -4 4 1060 971 299 82 29 chr6 62295180 62295596 -87221441 + Lx7 LINE L1 6883 7320 -376 4 1060 219 120 0 74 chr6 62295609 62295663 -87221374 + T-rich Low_complexity Low_complexity 3 52 0 4 1060 1742 204 23 13 chr6 62296026 62296419 -87220618 - Lx2B LINE L1 -734 6266 5870 4 1060 2373 196 88 10 chr6 62296441 62296952 -87220085 + Lx2B LINE L1 6316 6866 -134 4 1060 742 247 92 36 chr6 62296950 62297231 -87219806 - L1_Rod LINE L1 -817 5030 4734 4 1060 7482 70 15 0 chr6 62297241 62298358 -87218679 - L1Md_F2 LINE L1 -3 6579 5447 4 1060 301 93 0 0 chr6 62298356 62298399 -87218638 - L1Md_F2 LINE L1 -551 5332 5290 4 1060 477 124 49 6 chr6 62298402 62298564 -87218473 + (TA)n Simple_repeat Simple_repeat 2 170 0 4 1060 417 265 80 7 chr6 62298564 62298701 -87218336 - L1_Rod LINE L1 -3924 1923 1777 4 1060 1040 262 46 13 chr6 62298697 62298982 -87218055 + Lx6 LINE L1 6978 7532 -164 4 1060 516 100 0 0 chr6 62299974 62300054 -87216983 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1060 644 67 11 0 chr6 62301127 62301217 -87215820 + (TA)n Simple_repeat Simple_repeat 1 91 0 4 1060 279 79 0 0 chr6 62301217 62301255 -87215782 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1060 540 0 0 0 chr6 62302301 62302361 -87214676 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 4 1060 945 234 19 32 chr6 62302409 62302625 -87214412 + B3 SINE B2 2 214 -2 4 1060 222 317 17 0 chr6 62303012 62303072 -87213965 - ID4 SINE ID -14 69 9 4 1060 23 105 0 0 chr6 62303971 62304057 -87212980 + AT_rich Low_complexity Low_complexity 1 86 0 4 1060 33395 77 3 2 chr6 62304816 62310991 -87206046 - L1Md_F2 LINE L1 -2 6580 398 4 1060 24 32 0 0 chr6 62311721 62311752 -87205285 + AT_rich Low_complexity Low_complexity 1 31 0 4 1060 1490 197 47 3 chr6 62312148 62312444 -87204593 - RLTR27 LTR ERVK 0 309 1 4 1060 583 66 47 9 chr6 62312556 62312663 -87204374 + L1_Mus3 LINE L1 6524 6634 -4 4 1060 922 331 71 31 chr6 62312721 62313142 -87203895 + Lx8 LINE L1 6824 7261 -212 4 1060 1813 243 25 112 chr6 62313173 62313744 -87203293 - RMER15 LTR ERVL -2 573 53 4 1060 230 73 24 0 chr6 62314671 62314712 -87202325 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 4 1060 1850 184 28 23 chr6 62314794 62314963 -87202074 - RMER10B LTR ERVL 0 398 228 4 1060 387 0 0 0 chr6 62314963 62315006 -87202031 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1060 1850 184 28 23 chr6 62315006 62315232 -87201805 - RMER10B LTR ERVL -171 227 2 4 1060 1145 78 0 0 chr6 62315589 62315731 -87201306 + B1_Mus1 SINE Alu 2 143 -5 4 1060 453 36 0 0 chr6 62315744 62315799 -87201238 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 4 1060 247 232 61 31 chr6 62317437 62317535 -87199502 - Lx8 LINE L1 -7 7466 7366 4 1060 3302 147 14 14 chr6 62317560 62318114 -87198923 - Lx LINE L1 -7 6647 6094 4 1060 780 271 18 9 chr6 62318116 62318339 -87198698 + Lx7 LINE L1 5738 5962 -1734 4 1060 362 299 11 38 chr6 62318356 62318540 -87198497 + Lx7 LINE L1 6056 6234 -1462 4 1060 468 0 0 0 chr6 62318770 62318822 -87198215 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1060 234 0 0 0 chr6 62318823 62318849 -87198188 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 1060 1509 142 91 4 chr6 62319232 62319507 -87197530 + Lx2 LINE L1 6697 6995 -2 4 1060 814 151 158 0 chr6 62319634 62319786 -87197251 + B2_Mm2 SINE B2 3 178 -17 4 1060 3230 84 33 4 chr6 62319812 62320268 -87196769 - L1_Mus3 LINE L1 -3 6635 6167 4 1060 5454 62 0 0 chr6 62320334 62321017 -87196020 + L1Md_F2 LINE L1 4903 5585 -298 4 1060 8033 49 1 2 chr6 62321018 62322015 -87195022 + L1Md_F2 LINE L1 5587 6582 0 4 1060 983 73 66 0 chr6 62322135 62322271 -87194766 + B1_Mus1 SINE Alu 2 146 -2 4 1060 510 17 0 0 chr6 62322271 62322330 -87194707 + (CAA)n Simple_repeat Simple_repeat 2 60 0 4 1060 222 150 0 0 chr6 62323004 62323044 -87193993 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1060 228 315 138 9 chr6 62323819 62323928 -87193109 - PB1 SINE Alu 0 127 5 4 1060 408 55 0 0 chr6 62324759 62324814 -87192223 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1060 26 30 0 0 chr6 62324851 62324884 -87192153 + AT_rich Low_complexity Low_complexity 1 33 0 4 1060 235 361 90 6 chr6 62325095 62325251 -87191786 + Kanga1 DNA Tc2 281 449 -1296 4 1060 672 228 83 80 chr6 62325519 62325843 -87191194 - Lx7 LINE L1 -21 7675 7351 4 1060 447 297 26 33 chr6 62326160 62326313 -87190724 - Lx8 LINE L1 -361 7112 6961 4 1060 325 226 65 56 chr6 62326326 62326434 -87190603 + Lx8 LINE L1 6753 6861 -612 4 1060 382 254 18 0 chr6 62327118 62327232 -87189805 + L1MA7 LINE L1 6174 6289 -2 4 1060 198 103 0 0 chr6 62327518 62327547 -87189490 + (GAAAA)n Simple_repeat Simple_repeat 4 32 0 4 1060 283 260 146 7 chr6 62328094 62328194 -87188843 + RMER17C LTR ERVK 101 220 -190 4 1060 774 67 0 0 chr6 62328194 62328299 -87188738 + (TC)n Simple_repeat Simple_repeat 2 106 0 4 1060 283 260 146 7 chr6 62328299 62328349 -87188688 + RMER17C LTR ERVK 221 271 -139 4 1060 1365 61 0 0 chr6 62328356 62328536 -87188501 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1060 228 35 0 0 chr6 62329090 62329119 -87187918 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1060 948 92 46 0 chr6 62329119 62329249 -87187788 - B1_Mus1 SINE Alu -10 138 3 4 1060 369 0 0 0 chr6 62331803 62331844 -87185193 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1060 22 0 0 0 chr6 62333702 62333724 -87183313 + AT_rich Low_complexity Low_complexity 1 22 0 4 1060 513 47 0 0 chr6 62333801 62333865 -87183172 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1060 21 0 0 0 chr6 62333922 62333943 -87183094 + AT_rich Low_complexity Low_complexity 1 21 0 4 1060 650 259 140 19 chr6 62333991 62334255 -87182782 - Lx7 LINE L1 -263 7433 7138 4 1060 22 56 0 0 chr6 62334325 62334361 -87182676 + AT_rich Low_complexity Low_complexity 1 36 0 4 1060 1496 149 21 21 chr6 62334670 62334952 -87182085 + Lx LINE L1 6373 6654 0 4 1060 211 67 21 43 chr6 62334978 62335025 -87182012 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 4 1060 22 35 0 0 chr6 62335358 62335387 -87181650 + AT_rich Low_complexity Low_complexity 1 29 0 4 1060 252 0 0 0 chr6 62337163 62337191 -87179846 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1060 27 29 0 0 chr6 62337373 62337407 -87179630 + AT_rich Low_complexity Low_complexity 1 34 0 4 1060 1546 233 53 82 chr6 62337569 62338154 -87178883 - RLTR12A LTR ERVK 0 568 1 4 1060 716 292 44 19 chr6 62338154 62338350 -87178687 - B3 SINE B2 -9 207 7 4 1060 373 325 78 16 chr6 62338879 62339007 -87178030 + B1F SINE Alu 2 137 -12 4 1060 2207 218 132 27 chr6 62339208 62340148 -87176889 + Lx5 LINE L1 5460 6505 -545 4 1060 647 104 0 34 chr6 62340163 62340282 -87176755 - L1Md_F2 LINE L1 -4 6578 6464 4 1060 1839 284 53 15 chr6 62340279 62340808 -87176229 + Lx5 LINE L1 6497 7045 -5 4 1060 360 284 74 63 chr6 62340828 62341099 -87175938 + L1_Mur3 LINE L1 1494 1767 -4113 4 1060 35329 36 0 0 chr6 62341104 62346337 -87170700 + L1Md_T LINE L1 260 5589 -297 4 1060 8793 15 0 0 chr6 62346337 62347333 -87169704 + L1Md_T LINE L1 5590 6585 0 4 1060 1623 277 128 15 chr6 62347357 62348098 -87168939 + L1_Mur3 LINE L1 1796 2620 -3260 4 1060 287 182 0 0 chr6 62348097 62348152 -87168885 + L1_Mur3 LINE L1 2796 2850 -3030 4 1060 6886 136 29 11 chr6 62348149 62349947 -87167090 + Lx LINE L1 4815 6647 -7 4 1060 310 272 116 28 chr6 62349960 62350244 -87166793 + L1_Mur3 LINE L1 2881 3189 -2691 4 1060 2285 258 32 9 chr6 62350231 62350888 -87166149 + L1_Mur3 LINE L1 4551 5222 -658 4 1060 239 300 116 119 chr6 62350915 62351259 -87165778 - Charlie6 DNA MER1_type -2738 762 420 4 1060 180 53 79 0 chr6 62351364 62351402 -87165635 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1060 324 242 10 10 chr6 62352146 62352246 -87164791 + MMVL30-int LTR ERV1 3134 3233 -465 4 1060 336 301 115 51 chr6 62353072 62353289 -87163748 + RLTR12B LTR ERVK 1 231 -297 4 1060 697 287 80 29 chr6 62353560 62353872 -87163165 + RLTR10D LTR ERVK 1 328 -31 4 1060 455 232 18 0 chr6 62353930 62354042 -87162995 + IAP-d-int LTR ERVK 22 135 -6407 4 1060 253 321 0 0 chr6 62354137 62354243 -87162794 + IAP-d-int LTR ERVK 3170 3275 -3267 4 1060 2692 53 14 12 chr6 62354243 62354587 -87162450 + ORR1A0 LTR MaLR 2 346 0 4 1060 3472 290 20 16 chr6 62354588 62355796 -87161241 + IAP-d-int LTR ERVK 4182 5394 -1148 4 1060 2802 250 3 0 chr6 62355844 62356521 -87160516 + IAP-d-int LTR ERVK 5402 6080 -462 4 1060 1515 210 18 24 chr6 62356537 62356874 -87160163 + IAP-d-int LTR ERVK 6208 6542 0 4 1060 810 282 85 32 chr6 62356874 62357215 -87159822 + RLTR10D LTR ERVK 1 359 0 4 1060 286 256 34 23 chr6 62357647 62357735 -87159302 + RLTR14-int LTR ERV1 4950 5038 -279 4 1060 212 126 62 21 chr6 62357807 62357904 -87159133 + (TAAA)n Simple_repeat Simple_repeat 3 103 0 4 1060 395 322 28 17 chr6 62358325 62358502 -87158535 + MLT2B2 LTR ERVL 384 562 0 4 1060 969 171 11 22 chr6 62359825 62360005 -87157032 + RMER17A2 LTR ERVK 1 178 -728 4 1060 6360 117 34 16 chr6 62360005 62361052 -87155985 - L1_Mus3 LINE L1 -35 6603 5541 4 1060 816 296 106 36 chr6 62362318 62362744 -87154293 + Lx8 LINE L1 6084 6678 -966 4 1060 229 270 0 11 chr6 62363191 62363281 -87153756 + L1MC2 LINE L1 6132 6220 -124 5 1060 816 253 15 5 chr6 62363505 62363704 -87153333 + Lx5 LINE L1 6841 7041 -9 5 1060 248 194 36 36 chr6 62363712 62363824 -87153213 + (TAA)n Simple_repeat Simple_repeat 1 112 0 5 1060 362 269 76 103 chr6 62364786 62364931 -87152106 + B4 SINE B4 6 146 -146 5 1060 3280 70 7 0 chr6 62364964 62365407 -87151630 - Lx3_Mus LINE L1 0 7009 6564 5 1060 3535 111 78 7 chr6 62365407 62365969 -87151068 + Lx3_Mus LINE L1 5964 6565 -444 5 1060 426 111 63 0 chr6 62366398 62366461 -87150576 - L1_Mus3 LINE L1 -223 6415 6349 5 1060 27 29 0 0 chr6 62367747 62367781 -87149256 + AT_rich Low_complexity Low_complexity 1 34 0 5 1060 233 156 44 0 chr6 62367898 62367943 -87149094 + CT-rich Low_complexity Low_complexity 2 48 0 5 1060 366 80 0 0 chr6 62367962 62368012 -87149025 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1060 249 309 159 6 chr6 62368076 62368239 -87148798 - Lx9 LINE L1 -235 7409 7222 5 1060 267 93 0 0 chr6 62368239 62368282 -87148755 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 5 1060 189 0 0 0 chr6 62368281 62368302 -87148735 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1060 428 99 14 0 chr6 62368322 62368393 -87148644 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1060 567 344 52 35 chr6 62368465 62368833 -87148204 - Lx9 LINE L1 -457 7187 6814 5 1060 4966 40 0 0 chr6 62368959 62369551 -87147486 + L1Md_T LINE L1 5991 6582 0 5 1060 365 328 53 49 chr6 62369746 62370012 -87147025 + Lx8 LINE L1 7205 7471 -2 5 1060 454 355 26 90 chr6 62370073 62370383 -87146654 - MLT1A LTR MaLR -51 323 34 5 1060 551 312 24 43 chr6 62371172 62371380 -87145657 + B3 SINE B2 3 206 -10 5 1060 480 345 140 29 chr6 62371554 62371862 -87145175 - MTE2b LTR MaLR -4 375 34 5 1060 27291 122 9 25 chr6 62371996 62377378 -87139659 - L1_Mus3 LINE L1 0 6638 1350 5 1060 1856 202 3 0 chr6 62377381 62377712 -87139325 - L1VL1 LINE L1 -5986 436 105 5 1060 2377 84 0 3 chr6 62377808 62378131 -87138906 - L1_Mus1 LINE L1 0 6567 6246 5 1060 660 157 8 42 chr6 62378131 62378251 -87138786 - L1VL1 LINE L1 -6299 123 8 5 1060 216 0 0 0 chr6 62378594 62378618 -87138419 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 5 1060 620 272 121 8 chr6 62378727 62379087 -87137950 - L1MA9 LINE L1 -333 5967 5559 5 1060 248 272 37 12 chr6 62379373 62379455 -87137582 - L1MA9 LINE L1 -1263 4877 4794 5 1060 449 235 139 7 chr6 62379500 62379637 -87137400 - Lx8 LINE L1 -276 7197 7043 5 1060 2043 159 44 68 chr6 62379647 62380059 -87136978 + Lx LINE L1 6247 6648 -6 5 1060 24 0 0 0 chr6 62380425 62380449 -87136588 + AT_rich Low_complexity Low_complexity 1 24 0 5 1060 387 0 0 0 chr6 62380501 62380544 -87136493 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1060 1241 315 73 13 chr6 62380591 62381112 -87135925 - Lx8 LINE L1 -522 6951 6400 5 1060 311 264 162 30 chr6 62381130 62381501 -87135536 - L1MA9 LINE L1 -1877 4269 3850 5 1060 23 0 0 0 chr6 62381501 62381524 -87135513 + AT_rich Low_complexity Low_complexity 1 23 0 5 1060 370 330 114 41 chr6 62381697 62382072 -87134965 - L1M2 LINE L1 -3107 3036 2627 5 1060 1013 103 0 7 chr6 62382072 62382218 -87134819 - B1_Mus2 SINE Alu -1 146 2 5 1060 370 330 114 41 chr6 62382218 62382332 -87134705 - L1M2 LINE L1 -3517 2626 2511 5 1060 307 291 104 83 chr6 62382387 62382713 -87134324 - L1MD LINE L1 -844 5302 4970 5 1060 4588 70 0 7 chr6 62382718 62383336 -87133701 + L1_Mm LINE L1 4180 4793 -1090 5 1060 703 263 43 29 chr6 62383342 62383596 -87133441 - RMER19C LTR ERVK -194 417 101 5 1060 227 299 82 69 chr6 62383596 62383685 -87133352 - L1M2 LINE L1 -2955 3188 3102 5 1060 189 74 0 0 chr6 62383685 62383712 -87133325 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1060 227 299 82 69 chr6 62383712 62384160 -87132877 - L1M2 LINE L1 -3042 3101 2646 5 1060 18559 91 19 3 chr6 62384374 62387705 -87129332 + L1Md_F2 LINE L1 433 3818 -2065 5 1060 4902 16 2 9 chr6 62387704 62388263 -87128774 + L1Md_A LINE L1 5027 5586 -297 5 1060 8798 14 0 0 chr6 62388263 62389257 -87127780 + L1Md_A LINE L1 5587 6580 -2 5 132 14019 52 2 2 chr6 62389257 62391040 -87125997 + L1Md_F2 LINE L1 3805 5586 -297 5 1061 7392 78 0 16 chr6 62391040 62392050 -87124987 + L1Md_F2 LINE L1 5587 6580 -2 5 1061 280 275 38 0 chr6 62392140 62392220 -87124817 - L1_Rod LINE L1 -3491 2356 2274 5 1061 559 330 74 48 chr6 62392409 62392975 -87124062 - L1_Rod LINE L1 -3815 2032 1452 5 1061 236 28 0 53 chr6 62393554 62393592 -87123445 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 5 1061 1551 271 27 106 chr6 62393601 62394555 -87122482 - L1_Rod LINE L1 -51 5796 4918 5 1061 365 295 70 26 chr6 62394605 62394823 -87122214 - L1_Rod LINE L1 -2115 4028 3752 5 1061 528 59 0 0 chr6 62394824 62394892 -87122145 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1061 1022 120 8 8 chr6 62394899 62395161 -87121876 + (TTTC)n Simple_repeat Simple_repeat 1 262 0 5 1061 900 78 147 0 chr6 62395162 62395291 -87121746 - B1_Mus1 SINE Alu 0 148 1 5 1061 3801 160 60 1 chr6 62395293 62395962 -87121075 - Lx LINE L1 0 6654 5947 5 1061 336 206 29 67 chr6 62395964 62396068 -87120969 - L1MD LINE L1 -2407 3739 3640 5 1061 1109 64 35 6 chr6 62396489 62396663 -87120374 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 5 1061 1077 101 0 22 chr6 62396681 62396863 -87120174 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 1061 459 0 0 0 chr6 62396865 62396916 -87120121 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 5 1061 23467 75 12 15 chr6 62396922 62401113 -87115924 - L1Md_F3 LINE L1 -28 6980 2903 5 1061 12101 50 6 4 chr6 62401117 62402803 -87114234 + L1Md_A LINE L1 1108 2780 -3103 5 1061 5671 161 4 63 chr6 62402800 62403930 -87113107 + L1_Mur2 LINE L1 4504 5567 -310 5 1061 227 294 34 34 chr6 62403936 62404024 -87113013 + MLT1J LTR MaLR 371 458 -54 5 1061 6358 109 15 2 chr6 62404024 62404957 -87112080 + L1_Mus4 LINE L1 5688 6632 -4 5 1061 6747 175 18 15 chr6 62404980 62407013 -87110024 - L1_Mur1 LINE L1 -3359 2527 522 5 1061 468 0 0 0 chr6 62407464 62407516 -87109521 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1061 1570 275 41 7 chr6 62407516 62407977 -87109060 - Lx9 LINE L1 -179 7465 6989 5 1061 1708 134 103 19 chr6 62408075 62408386 -87108651 - Lx2 LINE L1 -1 6996 6660 5 1061 3107 199 70 3 chr6 62408386 62409010 -87108027 + RLTR17 LTR ERVK 1 666 -26 5 1061 2694 119 22 5 chr6 62409027 62409432 -87107605 - Lx2 LINE L1 -332 6665 6254 5 1061 1174 238 153 43 chr6 62409432 62409911 -87107126 - RMER19B LTR ERVK -237 665 87 5 1061 14636 158 34 7 chr6 62409970 62413147 -87103890 + Lx LINE L1 2941 6210 -444 5 1061 482 185 71 16 chr6 62413153 62413279 -87103758 + Lx LINE L1 6509 6641 -13 5 1061 383 139 0 27 chr6 62413357 62413431 -87103606 + T-rich Low_complexity Low_complexity 4 75 0 5 1061 281 360 39 80 chr6 62414718 62415056 -87101981 - L1M3b LINE L1 -5944 337 14 5 1061 3845 96 40 4 chr6 62415484 62416027 -87101010 - L1_Mus3 LINE L1 -24 6614 6052 5 1061 22 35 0 0 chr6 62416452 62416481 -87100556 + AT_rich Low_complexity Low_complexity 1 29 0 5 1061 564 302 63 13 chr6 62416611 62416849 -87100188 - Lx7 LINE L1 -477 7219 6970 5 1061 1743 293 53 26 chr6 62416843 62417502 -87099535 - Lx7 LINE L1 -897 6799 6123 5 1061 536 324 77 13 chr6 62417784 62418188 -87098849 + Lx7 LINE L1 5473 5900 -1796 5 1061 492 274 147 35 chr6 62418474 62418788 -87098249 + L1_Mur2 LINE L1 4515 4863 -1014 5 1061 252 209 0 0 chr6 62418788 62418879 -87098158 + GA-rich Low_complexity Low_complexity 2 92 0 5 1061 257 282 60 115 chr6 62419075 62419237 -87097800 + L1_Rod LINE L1 5307 5521 -779 5 1061 2675 51 62 3 chr6 62419237 62419574 -87097463 - IAPEY2_LTR LTR ERVK 0 357 1 5 1061 257 328 11 63 chr6 62419574 62419622 -87097415 + L1_Rod LINE L1 5522 5565 -735 5 1061 213 121 0 0 chr6 62419634 62419667 -87097370 + (GGA)n Simple_repeat Simple_repeat 3 35 0 5 1061 1254 80 0 0 chr6 62419667 62419843 -87097194 + (GAA)n Simple_repeat Simple_repeat 3 178 0 5 1061 247 349 36 0 chr6 62420421 62420504 -87096533 + PB1D7 SINE Alu 28 113 -7 5 1061 929 243 65 31 chr6 62420621 62420944 -87096093 - L1MA7 LINE L1 -38 6253 5920 5 1061 226 357 17 26 chr6 62421038 62421153 -87095884 + B3 SINE B2 2 115 -101 5 1061 304 329 0 0 chr6 62421154 62421234 -87095803 + ORR1B2 LTR MaLR 1 80 -287 5 1061 1391 185 31 20 chr6 62421234 62421631 -87095406 + BGLII_B LTR ERVK 1 415 -7 5 1061 1270 177 36 58 chr6 62421631 62421907 -87095130 + ORR1B2 LTR MaLR 69 338 -29 5 1061 1366 221 14 7 chr6 62421905 62422197 -87094840 + ORR1B2-int LTR MaLR 1216 1509 0 5 1061 1608 174 112 6 chr6 62422197 62422527 -87094510 + ORR1B2 LTR MaLR 1 365 -2 5 1061 661 338 24 0 chr6 62422798 62423005 -87094032 + B3 SINE B2 4 215 -1 5 1061 357 62 0 0 chr6 62423195 62423243 -87093794 + (T)n Simple_repeat Simple_repeat 1 48 0 5 1061 785 116 4 27 chr6 62423243 62423395 -87093642 - B1_Mus2 SINE Alu 0 149 10 5 1061 1262 279 40 30 chr6 62423724 62424153 -87092884 + Lx9 LINE L1 7024 7456 -188 5 1061 402 21 0 0 chr6 62424154 62424201 -87092836 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1061 312 188 49 12 chr6 62424211 62424292 -87092745 + Lx9 LINE L1 7518 7601 -43 5 1061 238 0 81 0 chr6 62425437 62425474 -87091563 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 5 1061 312 344 66 0 chr6 62425491 62425642 -87091395 + RMER15 LTR ERVL 405 565 -10 5 1061 4880 253 43 32 chr6 62426274 62427635 -87089402 - Lx7 LINE L1 -18 7678 6303 5 1061 554 109 27 9 chr6 62427912 62428023 -87089014 + (TA)n Simple_repeat Simple_repeat 2 114 0 5 1061 26 0 0 0 chr6 62428554 62428580 -87088457 + AT_rich Low_complexity Low_complexity 1 26 0 5 1061 2076 133 9 3 chr6 62428947 62429278 -87087759 + L1_Mus4 LINE L1 6295 6627 -9 5 1061 959 124 0 0 chr6 62429441 62429578 -87087459 + B1_Mus1 SINE Alu 2 138 -10 5 1061 1029 17 0 0 chr6 62429578 62429697 -87087340 + (GAA)n Simple_repeat Simple_repeat 2 120 0 5 1061 600 50 0 12 chr6 62429909 62429990 -87087047 + ORR1A4 LTR MaLR 238 317 -12 5 1061 785 321 63 92 chr6 62429984 62430533 -87086504 + MTE-int LTR MaLR 385 1312 -268 5 1061 325 301 37 78 chr6 62430543 62430734 -87086303 + MTC-int LTR MaLR 1068 1250 -8 5 1061 896 302 118 28 chr6 62430744 62431108 -87085929 + MTC LTR MaLR 10 406 -15 5 1061 1015 39 0 0 chr6 62431399 62431528 -87085509 - L1_Mus1 LINE L1 0 6567 6439 5 1061 4493 209 7 45 chr6 62431553 62432563 -87084474 - Lx2B LINE L1 -13 6987 6017 5 1061 455 360 25 79 chr6 62432595 62433065 -87083972 + Lx8 LINE L1 6196 6640 -833 5 1061 356 363 97 10 chr6 62433076 62433445 -87083592 + Lx8 LINE L1 6779 7199 -274 5 1061 680 298 98 13 chr6 62433763 62434239 -87082798 - Lx2B LINE L1 -1576 5897 5353 5 1061 1601 38 62 5 chr6 62434239 62434450 -87082587 - L1Md_F3 LINE L1 -2 6582 6360 5 1061 252 332 124 70 chr6 62434450 62434498 -87082539 - Lx2B LINE L1 -505 5378 5347 5 1061 325 188 24 0 chr6 62434568 62434653 -87082384 + CT-rich Low_complexity Low_complexity 3 89 0 5 1061 631 336 48 14 chr6 62434693 62435131 -87081906 - L1M2 LINE L1 -910 5233 4781 5 1061 3245 161 40 4 chr6 62436357 62436902 -87080135 + Lx2 LINE L1 5318 5882 -1115 5 1061 194 91 0 29 chr6 62436902 62436936 -87080101 + (TTA)n Simple_repeat Simple_repeat 1 33 0 6 1061 3245 143 37 2 chr6 62436936 62437191 -87079846 + Lx2 LINE L1 5883 6142 -855 5 1061 1286 159 11 86 chr6 62437172 62437441 -87079596 + Lx2 LINE L1 6403 6651 -3 5 1061 480 284 26 20 chr6 62437576 62437727 -87079310 + L1_Mur3 LINE L1 246 397 -7315 6 1061 1954 167 40 5 chr6 62437741 62438120 -87078917 - L1_Mur2 LINE L1 -1480 4397 4006 6 1061 3589 208 46 13 chr6 62438124 62438506 -87078531 + Lx5 LINE L1 5032 5439 -438 6 1061 315 0 0 0 chr6 62438506 62438541 -87078496 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1061 5380 225 39 11 chr6 62438541 62440031 -87077006 + Lx5 LINE L1 5440 7050 0 6 1061 1832 247 77 37 chr6 62440046 62440669 -87076368 + L1_Mur3 LINE L1 677 1324 -6388 6 1061 5947 83 5 6 chr6 62440677 62441504 -87075533 + L1_Mus3 LINE L1 5809 6634 -4 6 1061 735 283 58 130 chr6 62441504 62441935 -87075102 - Lx7 LINE L1 -704 6992 6593 6 1061 1958 251 92 71 chr6 62444879 62445030 -87072007 + L1Md_F LINE L1 150 245 -6296 6 1061 212 0 0 35 chr6 62445030 62445059 -87071978 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1061 9701 162 36 19 chr6 62445059 62447562 -87069475 + L1Md_F LINE L1 229 2799 -1018 6 1061 18107 73 1 31 chr6 62447555 62449032 -87068005 - L1Md_A LINE L1 -2105 3778 2310 6 1061 3245 47 0 5 chr6 62449032 62449442 -87067595 + L1Md_F2 LINE L1 6173 6580 -2 6 1061 18107 93 5 22 chr6 62449442 62451167 -87065870 - L1Md_A LINE L1 -3574 2309 647 6 1061 292 244 48 12 chr6 62451168 62451266 -87065771 + Lx8 LINE L1 6771 6886 -587 6 1061 1024 75 8 0 chr6 62451662 62451796 -87065241 + B1_Mus1 SINE Alu 1 135 -13 6 1061 1343 39 28 6 chr6 62451797 62451978 -87065059 - L1Md_F3 LINE L1 0 6584 6400 6 1061 1883 41 8 4 chr6 62451978 62452221 -87064816 + L1Md_F3 LINE L1 5099 5342 -541 6 1061 441 67 0 16 chr6 62452214 62452275 -87064762 + L1Md_F3 LINE L1 5812 5871 -713 6 1061 242 220 0 0 chr6 62452281 62452340 -87064697 + A-rich Low_complexity Low_complexity 1 59 0 6 1061 909 37 0 0 chr6 62452863 62452971 -87064066 - L1_Mus3 LINE L1 -296 6342 6235 6 1061 495 320 157 28 chr6 62453030 62453564 -87063473 - Lx8 LINE L1 0 7473 6871 6 1061 283 277 52 47 chr6 62453612 62453707 -87063330 - ORR1E LTR MaLR -1 378 273 6 1061 416 130 29 0 chr6 62453707 62453776 -87063261 + ORR1A2 LTR MaLR 1 71 -256 6 1061 7074 77 6 7 chr6 62453776 62454717 -87062320 - L1Md_F2 LINE L1 -28 6554 5615 6 1061 347 284 0 0 chr6 62455081 62455162 -87061875 + BC1_Mm scRNA scRNA 8 88 -64 6 1061 435 252 60 15 chr6 62456544 62456677 -87060360 + LTR86B1 LTR ERVL 345 483 -10 6 1061 261 254 30 30 chr6 62457055 62457189 -87059848 - Lx9 LINE L1 0 7644 7511 6 1061 597 257 81 12 chr6 62457181 62457354 -87059683 + Lx9 LINE L1 7217 7401 -243 6 1061 1867 220 11 13 chr6 62457631 62458009 -87059028 + MTC LTR MaLR 1 377 -44 6 1061 982 271 18 14 chr6 62458058 62458339 -87058698 - Lx6 LINE L1 -59 7401 7120 6 1061 511 250 33 8 chr6 62458339 62458460 -87058577 + B3 SINE B2 1 124 -92 6 1061 303 235 78 0 chr6 62458521 62458623 -87058414 + Lx6 LINE L1 7322 7431 -29 6 1061 291 206 7 17 chr6 62458680 62458747 -87058290 + MTC LTR MaLR 366 421 0 6 1061 247 330 27 27 chr6 62459180 62459292 -87057745 + MLT1A1 LTR MaLR 291 402 -6 6 1061 28 86 0 0 chr6 62459363 62459433 -87057604 + AT_rich Low_complexity Low_complexity 1 70 0 6 1061 259 369 107 7 chr6 62459525 62459806 -87057231 + L2a LINE L2 1996 2304 -1115 6 1061 960 296 55 7 chr6 62460014 62460323 -87056714 + Lx9 LINE L1 6401 6724 -920 6 1061 184 393 0 9 chr6 62460608 62460716 -87056321 + L2a LINE L2 3055 3161 -265 6 1061 275 301 12 0 chr6 62460958 62461041 -87055996 + (TGGA)n Simple_repeat Simple_repeat 1 84 0 6 1061 4945 151 4 11 chr6 62461055 62461894 -87055143 - L1_Mm LINE L1 -983 4900 4068 6 1061 6909 126 23 1 chr6 62461891 62463078 -87053959 + Lx LINE L1 5433 6645 -9 6 1061 270 0 0 0 chr6 62463111 62463141 -87053896 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 6 1061 1191 112 0 0 chr6 62463141 62463319 -87053718 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 1061 1195 293 54 23 chr6 62464331 62464722 -87052315 - MTD LTR MaLR -16 403 1 6 1061 257 267 57 47 chr6 62464722 62464828 -87052209 - MTD-int LTR MaLR 0 1258 1152 6 1061 14136 224 52 31 chr6 62464832 62465961 -87051076 + Lx3C LINE L1 3 1423 -4454 6 1061 182 37 37 0 chr6 62465961 62465988 -87051049 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1061 14136 195 21 99 chr6 62465988 62466573 -87050464 + Lx3C LINE L1 1424 1990 -3887 6 1061 282 73 0 0 chr6 62466573 62466614 -87050423 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1061 14136 195 21 99 chr6 62466614 62468492 -87048545 + Lx3C LINE L1 1991 3595 -2282 6 1061 1980 112 32 10 chr6 62468492 62468800 -87048237 + L1_Mus4 LINE L1 6320 6634 -2 6 1061 14136 195 21 99 chr6 62468800 62470166 -87046871 + Lx3C LINE L1 3596 4940 -937 6 1061 6598 159 10 69 chr6 62470160 62470535 -87046502 + Lx3C LINE L1 5604 5924 -1052 6 1061 306 0 0 0 chr6 62470535 62470569 -87046468 + (CAGAA)n Simple_repeat Simple_repeat 4 37 0 6 1061 6598 176 11 69 chr6 62470569 62471668 -87045369 + Lx3C LINE L1 5925 6968 -5 6 1061 18257 182 18 71 chr6 62471718 62476337 -87040700 + L1VL4 LINE L1 503 4837 -1046 6 1061 8118 39 3 8 chr6 62476337 62477338 -87039699 + L1Md_T LINE L1 5587 6582 0 6 1061 18257 174 17 79 chr6 62477338 62477973 -87039064 + L1VL4 LINE L1 4838 5474 -409 6 1061 2678 88 8 0 chr6 62477971 62478335 -87038702 + L1_Mus3 LINE L1 5868 6234 -404 6 1061 474 82 0 0 chr6 62478335 62478408 -87038629 + L1_Mus3 LINE L1 6558 6630 -8 6 1061 1360 231 92 61 chr6 62478458 62478883 -87038154 + RLTR11A LTR ERVK 1 438 -90 6 1061 21 57 0 0 chr6 62478883 62478918 -87038119 + AT_rich Low_complexity Low_complexity 1 35 0 6 1061 315 324 0 18 chr6 62478945 62479055 -87037982 + L1MCa LINE L1 1639 1746 -4762 6 1061 240 35 0 0 chr6 62480227 62480256 -87036781 + (CAA)n Simple_repeat Simple_repeat 3 31 0 6 1061 189 0 0 0 chr6 62480882 62480903 -87036134 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1061 1116 289 36 32 chr6 62481239 62481796 -87035241 - L1_Rod LINE L1 -2910 2937 2379 6 1061 250 308 11 11 chr6 62482061 62482153 -87034884 - Lx9 LINE L1 -1713 5931 5840 6 1061 662 187 21 7 chr6 62482168 62482308 -87034729 + URR1A DNA MER1_type 85 226 0 6 1061 1410 279 18 11 chr6 62482361 62482800 -87034237 + Lx9 LINE L1 7052 7493 -151 6 1061 216 0 0 0 chr6 62483066 62483090 -87033947 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1061 320 267 19 9 chr6 62483213 62483319 -87033718 - L1M3 LINE L1 -516 5652 5546 6 1061 25 83 0 0 chr6 62483353 62483413 -87033624 + AT_rich Low_complexity Low_complexity 1 60 0 6 1061 223 93 23 23 chr6 62483425 62483469 -87033568 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 6 1061 579 171 24 8 chr6 62483469 62483593 -87033444 + Lx9 LINE L1 7359 7484 -160 6 1061 27 62 0 0 chr6 62484198 62484246 -87032791 + AT_rich Low_complexity Low_complexity 1 48 0 6 1061 2058 147 47 0 chr6 62484310 62484650 -87032387 - Lx LINE L1 -1 6996 6641 6 1061 3791 145 13 4 chr6 62484664 62485342 -87031695 + MusHAL1 LINE L1 1560 2243 -469 6 1061 315 83 0 0 chr6 62485348 62485396 -87031641 + Lx2 LINE L1 6117 6164 -833 6 1061 2950 75 2 26 chr6 62485402 62485829 -87031208 + BGLII LTR ERVK 5 421 0 6 1061 4525 160 52 10 chr6 62485829 62486650 -87030387 + Lx2 LINE L1 6141 6996 -1 6 1061 7342 158 25 19 chr6 62486652 62488044 -87028993 + L1_Mur2 LINE L1 3463 4863 -1014 6 1061 309 238 14 26 chr6 62488043 62488130 -87028907 - Lx5 LINE L1 -201 6857 6752 6 1061 22 0 0 0 chr6 62488161 62488183 -87028854 + AT_rich Low_complexity Low_complexity 1 22 0 6 1061 384 59 0 0 chr6 62488200 62488251 -87028786 + (T)n Simple_repeat Simple_repeat 1 51 0 6 1061 243 79 0 0 chr6 62488587 62488625 -87028412 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1061 1174 48 7 0 chr6 62488625 62488771 -87028266 - B1_Mus2 SINE Alu 0 147 1 6 1061 21 36 0 0 chr6 62488789 62488817 -87028220 + AT_rich Low_complexity Low_complexity 1 28 0 6 1061 5638 124 23 3 chr6 62488818 62489715 -87027322 - Lx LINE L1 -3 6651 5737 6 1061 216 0 0 0 chr6 62490510 62490534 -87026503 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1061 22 0 0 0 chr6 62490818 62490840 -87026197 + AT_rich Low_complexity Low_complexity 1 22 0 6 1061 445 227 20 0 chr6 62491048 62491198 -87025839 + (CATATA)n Simple_repeat Simple_repeat 2 154 0 6 1061 4148 120 9 5 chr6 62492171 62492816 -87024221 - L1_Mus3 LINE L1 -6 6632 5985 6 1061 2007 70 4 4 chr6 62492816 62493088 -87023949 + L1Md_F2 LINE L1 6311 6582 0 6 1061 2869 72 41 3 chr6 62493108 62493230 -87023807 - L1_Mus3 LINE L1 -641 5997 5860 6 1061 188 35 35 0 chr6 62493230 62493259 -87023778 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1061 3436 97 22 2 chr6 62493259 62493761 -87023276 - L1_Mus3 LINE L1 -779 5859 5358 6 1061 393 22 0 0 chr6 62493788 62493834 -87023203 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1061 269 349 35 0 chr6 62494034 62494120 -87022917 - B1F2 SINE Alu -43 106 18 6 1061 849 116 0 0 chr6 62494877 62495032 -87022005 + (GA)n Simple_repeat Simple_repeat 1 155 0 6 1061 23 68 0 0 chr6 62495145 62495189 -87021848 + AT_rich Low_complexity Low_complexity 1 44 0 6 1061 3372 112 22 13 chr6 62495720 62496256 -87020781 - L1_Mus3 LINE L1 -6 6632 6092 6 1061 320 217 17 0 chr6 62497088 62497148 -87019889 + HAL1-3A_ME LINE L1 1974 2034 -824 6 1061 6594 102 67 15 chr6 62497213 62498481 -87018556 - L1_Mus3 LINE L1 0 6638 5293 6 1061 311 0 0 25 chr6 62498481 62498521 -87018516 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 6 1061 4495 139 2 65 chr6 62498521 62498552 -87018485 - L1_Mm LINE L1 -591 5292 5292 6 1061 2406 48 0 0 chr6 62498552 62498847 -87018190 - L1Md_A LINE L1 -1 6581 6287 6 1061 4495 139 2 65 chr6 62498847 62499039 -87017998 - L1_Mus3 LINE L1 -591 5292 5114 6 1061 1489 142 92 3 chr6 62499037 62499320 -87017717 + L1_Mm LINE L1 4582 4889 -994 6 1061 258 246 0 14 chr6 62500547 62500617 -87016420 + L1M LINE L1 5335 5403 -791 1 1061 1000 189 84 10 chr6 62501179 62501382 -87015655 - URR1A DNA MER1_type -1 225 8 2 1061 243 0 0 0 chr6 62501557 62501584 -87015453 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1061 679 103 0 0 chr6 62501955 62502072 -87014965 + Lx3_Mus LINE L1 6893 7009 0 4 1061 879 122 61 0 chr6 62503080 62503227 -87013810 + Lx2B LINE L1 6473 6628 -372 5 1061 301 359 8 0 chr6 62503225 62503356 -87013681 - Lx9 LINE L1 -291 7353 7222 6 1061 402 21 0 0 chr6 62504013 62504060 -87012977 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1061 484 309 14 35 chr6 62504170 62504311 -87012726 - RSINE1 SINE B4 -16 149 12 8 1061 1826 61 288 14 chr6 62504327 62504608 -87012429 + RLTR10D LTR ERVK 2 359 0 9 1061 429 36 0 0 chr6 62505082 62505137 -87011900 + (CAAAAA)n Simple_repeat Simple_repeat 4 58 0 1 1061 22 0 0 0 chr6 62505446 62505468 -87011569 + AT_rich Low_complexity Low_complexity 1 22 0 1 1061 29 28 0 0 chr6 62505496 62505532 -87011505 + AT_rich Low_complexity Low_complexity 1 36 0 1 1061 231 170 0 0 chr6 62505786 62505833 -87011204 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1061 22 0 0 0 chr6 62505920 62505942 -87011095 + AT_rich Low_complexity Low_complexity 1 22 0 1 1061 25 83 0 0 chr6 62506426 62506486 -87010551 + AT_rich Low_complexity Low_complexity 1 60 0 1 1061 749 67 10 0 chr6 62506510 62506614 -87010423 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 1 1061 240 336 179 27 chr6 62507792 62508015 -87009022 + MLT1F1 LTR MaLR 263 519 -50 1 1061 271 295 78 60 chr6 62508522 62508688 -87008349 + MLT1B LTR MaLR 216 384 -6 1 1061 401 324 105 34 chr6 62508904 62509198 -87007839 - MLT1B LTR MaLR -63 327 13 1 1061 393 341 52 28 chr6 62509280 62509491 -87007546 - MT2A LTR ERVL -149 384 169 2 1061 39727 21 2 7 chr6 62509491 62515690 -87001347 - L1Md_A LINE L1 -5 6577 416 2 1061 283 388 12 17 chr6 62515731 62515904 -87001133 + Lx8 LINE L1 7040 7211 -262 2 1061 339 25 0 0 chr6 62515994 62516034 -87001003 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1061 276 276 39 13 chr6 62516040 62516117 -87000920 + Lx8 LINE L1 7244 7322 -151 2 1061 3387 75 4 4 chr6 62516540 62516997 -87000040 + L1_Mus2 LINE L1 6109 6565 -1 2 1061 1483 122 26 4 chr6 62517541 62517772 -86999265 + L1Md_T LINE L1 6347 6582 0 2 1061 1731 94 54 13 chr6 62517785 62518162 -86998875 - RLTR1B LTR ERV1 -53 459 1 2 1061 27 49 0 0 chr6 62518240 62518281 -86998756 + AT_rich Low_complexity Low_complexity 1 41 0 2 1061 2841 12 0 0 chr6 62518286 62518611 -86998426 + L1Md_A LINE L1 6258 6582 0 2 1061 407 333 84 4 chr6 62518730 62518980 -86998057 - Lx8 LINE L1 -29 7444 7175 2 1061 261 139 0 0 chr6 62519958 62520001 -86997036 + (CAA)n Simple_repeat Simple_repeat 3 45 0 3 1061 1161 111 1 0 chr6 62520273 62520441 -86996596 + L1_Mm LINE L1 5492 5661 -219 3 1061 21 57 0 0 chr6 62520572 62520607 -86996430 + AT_rich Low_complexity Low_complexity 1 35 0 3 1061 21 36 0 0 chr6 62520987 62521015 -86996022 + AT_rich Low_complexity Low_complexity 1 28 0 3 1061 272 257 0 0 chr6 62521110 62521184 -86995853 - Lx9 LINE L1 -5 7639 7566 3 1062 327 291 97 75 chr6 62521670 62521856 -86995181 - Lx8 LINE L1 -17 7456 7267 3 1062 21 36 0 0 chr6 62521933 62521961 -86995076 + AT_rich Low_complexity Low_complexity 1 28 0 3 1062 2948 38 0 0 chr6 62522188 62522534 -86994503 + ORR1A1 LTR MaLR 1 346 0 3 1062 432 0 0 0 chr6 62522685 62522733 -86994304 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1062 400 266 30 45 chr6 62523656 62523790 -86993247 - RLTR42-int LTR ERVK -4164 1358 1227 3 1062 702 133 0 0 chr6 62524361 62524474 -86992563 + (TC)n Simple_repeat Simple_repeat 2 114 0 4 1062 559 91 8 120 chr6 62525660 62525785 -86991252 - RLTRETN_Mm LTR ERVK -211 111 1 4 1062 296 274 23 35 chr6 62525919 62526006 -86991031 - RLTR42-int LTR ERVK -3761 1761 1676 4 1062 198 0 0 0 chr6 62526091 62526113 -86990924 + (CAA)n Simple_repeat Simple_repeat 3 24 0 4 1062 27 0 0 0 chr6 62526537 62526564 -86990473 + AT_rich Low_complexity Low_complexity 1 27 0 4 1062 180 0 0 0 chr6 62526650 62526670 -86990367 + (CAAAC)n Simple_repeat Simple_repeat 3 22 0 4 1062 5007 97 6 6 chr6 62526925 62527928 -86989109 - Lx3A LINE L1 -786 6195 5189 4 1062 3294 102 65 14 chr6 62527926 62528431 -86988606 + Lx3A LINE L1 6221 6751 -230 4 1062 1964 285 80 36 chr6 62528442 62529455 -86987582 - L1_Rod LINE L1 -1499 4348 3292 4 1062 350 307 51 25 chr6 62529457 62529614 -86987423 - L1MD LINE L1 -2920 3226 3066 4 1062 226 277 0 0 chr6 62530527 62530574 -86986463 + LTR90A LTR LTR 851 897 -79 4 1062 193 89 22 22 chr6 62530846 62530892 -86986145 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 5 1062 257 329 58 23 chr6 62530923 62531094 -86985943 - Lx8 LINE L1 -1184 6289 6113 5 1062 1014 319 58 4 chr6 62531512 62531996 -86985041 + Lx7 LINE L1 4627 5136 -744 5 1062 272 275 0 199 chr6 62533383 62533519 -86983518 + PB1D10 SINE Alu 9 117 0 5 1062 332 291 22 44 chr6 62533588 62533678 -86983359 + B3A SINE B2 1 88 -110 5 1062 24 32 0 0 chr6 62533688 62533719 -86983318 + AT_rich Low_complexity Low_complexity 1 31 0 5 1062 322 361 5 58 chr6 62533890 62534081 -86982956 + L1M2 LINE L1 4919 5099 -1044 5 1062 515 300 80 60 chr6 62534084 62534555 -86982482 + Lx7 LINE L1 5420 5906 -1790 5 1062 384 267 60 59 chr6 62534668 62534939 -86982098 - Lx8 LINE L1 -786 5360 5021 5 1062 3117 175 15 18 chr6 62535721 62536326 -86980711 - Lx4B LINE L1 0 7058 6456 5 1062 1235 338 79 65 chr6 62536346 62536665 -86980372 - Lx9 LINE L1 -53 7591 7230 5 1062 1260 176 0 8 chr6 62536665 62536905 -86980132 - Lx2B LINE L1 -5 6995 6758 5 1062 1235 338 79 65 chr6 62536905 62537609 -86979428 - Lx9 LINE L1 -415 7229 6554 5 1062 387 73 0 0 chr6 62537612 62537667 -86979370 + (TTG)n Simple_repeat Simple_repeat 1 55 0 6 1062 3461 184 38 29 chr6 62537667 62538315 -86978722 + Lx4A LINE L1 6402 7055 -3 6 1062 515 250 6 37 chr6 62538316 62538478 -86978559 + RLTR18-int LTR ERVK 5201 5357 -4 6 1062 345 47 0 0 chr6 62538601 62538644 -86978393 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1062 923 349 92 7 chr6 62538779 62539342 -86977695 + Lx9 LINE L1 6440 7050 -594 6 1062 724 314 21 16 chr6 62540516 62540707 -86976330 + B3A SINE B2 5 196 -2 6 1062 1129 49 0 0 chr6 62540730 62540874 -86976163 + B1_Mus1 SINE Alu 2 145 -3 6 1062 282 29 0 0 chr6 62540874 62540909 -86976128 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1062 210 368 17 25 chr6 62540928 62541048 -86975989 - L2 LINE L2 -673 2746 2628 6 1062 23 0 0 0 chr6 62542204 62542227 -86974810 + AT_rich Low_complexity Low_complexity 1 23 0 6 1062 393 58 0 0 chr6 62543362 62543414 -86973623 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1062 655 281 0 7 chr6 62543436 62543583 -86973454 - RSINE1 SINE B4 -18 147 2 7 1062 669 239 0 23 chr6 62543977 62544110 -86972927 + RMER1B Other Other 607 736 -330 7 1062 383 355 112 27 chr6 62544151 62544374 -86972663 - MTE2b LTR MaLR -90 289 48 7 1062 217 346 0 24 chr6 62544445 62544528 -86972509 - L2a LINE L2 -15 3411 3331 7 1062 392 286 30 55 chr6 62545024 62545206 -86971831 + ORR1D2 LTR MaLR 1 177 -197 7 1062 1457 292 33 47 chr6 62545226 62545963 -86971074 - RMER1B Other Other -146 920 42 7 1062 796 319 46 19 chr6 62546041 62546303 -86970734 + ORR1D2 LTR MaLR 102 370 0 7 1062 3437 142 14 12 chr6 62547532 62548110 -86968927 + Lx2 LINE L1 6418 6996 -1 7 1062 23 0 0 0 chr6 62548623 62548646 -86968391 + AT_rich Low_complexity Low_complexity 1 23 0 7 1062 237 204 0 0 chr6 62550497 62550541 -86966496 - URR1B DNA MER1_type -60 165 122 7 1062 539 268 63 37 chr6 62550547 62550724 -86966313 + L1_Mur3 LINE L1 5044 5232 -648 8 1062 844 226 103 0 chr6 62550724 62550928 -86966109 - URR1B DNA MER1_type 0 225 1 8 1062 539 268 63 37 chr6 62550928 62551018 -86966019 + L1_Mur3 LINE L1 5233 5317 -563 8 1062 360 0 0 0 chr6 62551058 62551098 -86965939 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1062 233 333 92 8 chr6 62551510 62551640 -86965397 + RMER12 LTR ERVK 704 844 -478 8 1062 1689 237 57 69 chr6 62551734 62552450 -86964587 - RMER17B LTR ERVK -183 723 1 8 1062 549 181 0 0 chr6 62552693 62552826 -86964211 + (TG)n Simple_repeat Simple_repeat 1 133 0 8 1062 253 294 91 32 chr6 62552895 62553081 -86963956 - L1M4c LINE L1 -4612 1772 1576 8 1062 281 288 86 57 chr6 62553441 62553581 -86963456 + B3 SINE B2 73 216 0 8 1062 307 307 203 0 chr6 62554891 62555044 -86961993 - MT2A LTR ERVL -2 531 348 8 1062 470 325 107 56 chr6 62555045 62555456 -86961581 - MT2A LTR ERVL -101 432 1 8 1062 296 270 44 122 chr6 62555534 62555779 -86961258 - MLT1C LTR MaLR -209 258 29 9 1062 219 69 0 0 chr6 62556371 62556400 -86960637 + (TTTTC)n Simple_repeat Simple_repeat 5 33 0 9 1062 1086 76 7 0 chr6 62556400 62556544 -86960493 - B1_Mus2 SINE Alu 0 147 3 9 1062 242 29 29 0 chr6 62556860 62556895 -86960142 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1062 5630 109 14 25 chr6 62557131 62558006 -86959031 - Lx LINE L1 -7 6647 5783 9 1062 644 190 49 0 chr6 62558028 62558170 -86958867 - Lx LINE L1 -5 6649 6501 9 1062 519 122 0 0 chr6 62558188 62558262 -86958775 + Lx2 LINE L1 5788 5861 -1136 9 1062 1425 152 66 0 chr6 62558259 62558503 -86958534 - Lx LINE L1 -119 5764 5505 9 1062 414 0 0 0 chr6 62559713 62559759 -86957278 + (TA)n Simple_repeat Simple_repeat 1 46 0 9 1062 732 123 0 0 chr6 62559759 62559873 -86957164 + (TG)n Simple_repeat Simple_repeat 1 114 0 9 1062 402 286 84 45 chr6 62560494 62560648 -86956389 + MTD LTR MaLR 1 160 -259 9 1062 482 338 37 45 chr6 62560651 62560893 -86956144 - L1M2 LINE L1 -744 5399 5160 1 1062 279 79 0 0 chr6 62560904 62560942 -86956095 + (CATGT)n Simple_repeat Simple_repeat 3 40 0 1 1062 555 16 0 0 chr6 62560960 62561024 -86956013 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 1 1062 883 242 24 5 chr6 62561026 62561238 -86955799 - B4 SINE B4 -75 217 2 1 1062 7997 55 1 3 chr6 62561347 62562961 -86954076 - L1Md_F2 LINE L1 0 6582 4970 1 1062 476 239 135 5 chr6 62563047 62563241 -86953796 - L1M2 LINE L1 -1096 5044 4800 1 1062 24 0 0 0 chr6 62563281 62563305 -86953732 + AT_rich Low_complexity Low_complexity 1 24 0 1 1062 522 0 0 0 chr6 62563667 62563725 -86953312 + (GAAAA)n Simple_repeat Simple_repeat 2 59 0 1 1062 940 264 73 24 chr6 62564245 62564557 -86952480 + ORR1D2 LTR MaLR 1 336 -43 1 1062 2129 88 0 10 chr6 62564563 62564862 -86952175 - L1_Mus1 LINE L1 0 6567 6272 1 1062 641 53 0 0 chr6 62564862 62564938 -86952099 + L1_Mus1 LINE L1 6159 6234 -333 1 1062 343 197 0 27 chr6 62564938 62565011 -86952026 + ORR1D2 LTR MaLR 300 370 0 1 1062 23 33 0 0 chr6 62565176 62565206 -86951831 + AT_rich Low_complexity Low_complexity 1 30 0 1 1062 314 345 65 26 chr6 62565233 62565465 -86951572 + L1MC2 LINE L1 5622 5862 -482 1 1062 271 313 0 0 chr6 62565647 62565746 -86951291 + L1MA10 LINE L1 6185 6283 -51 1 1062 23 0 0 0 chr6 62565780 62565803 -86951234 + AT_rich Low_complexity Low_complexity 1 23 0 1 1062 368 328 44 31 chr6 62566309 62566475 -86950562 - Lx7 LINE L1 -402 7294 7136 1 1062 461 318 166 32 chr6 62566529 62566807 -86950230 - Lx7 LINE L1 -343 7130 6820 1 1062 22 0 0 0 chr6 62567493 62567515 -86949522 + AT_rich Low_complexity Low_complexity 1 22 0 1 1062 852 222 64 34 chr6 62568021 62568254 -86948783 + ORR1D1 LTR MaLR 1 240 -134 1 1062 239 215 30 14 chr6 62568251 62568324 -86948713 + ORR1D1 LTR MaLR 323 418 -3 1 1062 368 322 123 27 chr6 62568399 62568928 -86948109 + L1MC3 LINE L1 5402 5982 -1803 1 1062 611 220 48 34 chr6 62569409 62569555 -86947482 + B1_Mur4 SINE Alu 2 149 -1 1 1062 995 285 106 38 chr6 62569970 62570444 -86946593 + RMER5 LTR ERV1 1 506 -28 1 1062 429 20 0 0 chr6 62571668 62571718 -86945319 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 1 1062 468 0 0 0 chr6 62571720 62571772 -86945265 + (TTTTC)n Simple_repeat Simple_repeat 3 54 0 1 1062 418 271 40 147 chr6 62571811 62571988 -86945049 - B3 SINE B2 -1 215 58 1 1062 204 200 0 0 chr6 62571990 62572035 -86945002 + (TATG)n Simple_repeat Simple_repeat 4 48 0 1 1062 752 134 6 19 chr6 62572041 62572201 -86944836 + (TA)n Simple_repeat Simple_repeat 2 159 0 1 1062 266 368 0 0 chr6 62572238 62572333 -86944704 - Lx8 LINE L1 -267 7206 7112 1 1062 6355 125 27 6 chr6 62572373 62573369 -86943668 - L1_Mus4 LINE L1 -6 6630 5614 1 1062 623 286 73 32 chr6 62573561 62573781 -86943256 - MTC LTR MaLR -192 229 1 1 1062 183 129 0 0 chr6 62574470 62574501 -86942536 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1062 3981 101 26 15 chr6 62574524 62575128 -86941909 - L1_Mus2 LINE L1 0 6566 5956 1 1062 4343 6 0 0 chr6 62575135 62575616 -86941421 - L1Md_T LINE L1 0 6582 6102 1 1062 4945 102 6 4 chr6 62575616 62576469 -86940568 - L1_Mus2 LINE L1 -594 5972 5120 1 1062 3698 128 22 48 chr6 62576469 62577116 -86939921 + L1_Mus2 LINE L1 4512 5141 -742 1 1062 408 194 0 0 chr6 62577121 62577193 -86939844 + MTD LTR MaLR 20 91 -330 1 1062 5136 72 1 0 chr6 62577193 62577861 -86939176 + L1Md_F2 LINE L1 4918 5586 -297 1 1062 7558 70 3 12 chr6 62577861 62578866 -86938171 + L1Md_F2 LINE L1 5587 6582 0 1 1062 1172 275 14 62 chr6 62578866 62579219 -86937818 + MTD LTR MaLR 84 419 0 1 1062 1386 242 173 125 chr6 62579219 62580419 -86936618 + MTD-int LTR MaLR 1 1258 0 1 1062 308 358 22 0 chr6 62580456 62580590 -86936447 + MTD LTR MaLR 12 148 -271 1 1062 25 51 0 0 chr6 62580828 62580867 -86936170 + AT_rich Low_complexity Low_complexity 1 39 0 1 1062 632 286 79 5 chr6 62580967 62581176 -86935861 + MTD LTR MaLR 111 325 -94 1 1062 8239 172 17 8 chr6 62581193 62582995 -86934042 + Lx2B LINE L1 5175 6995 -5 1 1062 1052 96 0 0 chr6 62583265 62583401 -86933636 - B1_Mus2 SINE Alu -10 137 2 1 1062 681 229 15 0 chr6 62583523 62583654 -86933383 + ETnERV2-int LTR ERVK 7070 7202 -204 1 1062 716 194 123 99 chr6 62584302 62584485 -86932552 - RLTR25B LTR ERVK -14 1014 836 1 1062 459 0 0 0 chr6 62584485 62584536 -86932501 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1062 716 194 123 99 chr6 62584536 62584604 -86932433 - RLTR25B LTR ERVK -193 835 757 1 1062 1096 201 119 61 chr6 62584946 62585086 -86931951 - RLTR25A LTR ERVK -165 863 718 1 1062 2238 198 60 8 chr6 62585086 62585565 -86931472 + RLTR19C LTR ERVK 3 506 0 1 1062 2536 194 55 14 chr6 62585565 62586160 -86930877 - RLTR25A LTR ERVK -311 717 54 1 1062 3119 153 53 4 chr6 62586185 62586728 -86930309 - ORR1B1-int LTR MaLR -494 1469 900 1 1062 1920 233 33 167 chr6 62586756 62587290 -86929747 - RLTR25A LTR ERVK 0 1103 679 1 1062 180 0 0 0 chr6 62587290 62587310 -86929727 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 1 1062 1920 233 33 167 chr6 62587310 62587565 -86929472 - RLTR25A LTR ERVK -425 678 420 1 1062 1856 190 23 137 chr6 62588058 62588181 -86928856 - RLTR25A LTR ERVK -602 426 320 1 1062 266 107 18 0 chr6 62588181 62588237 -86928800 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1 1062 1856 190 23 137 chr6 62588237 62588594 -86928443 - RLTR25A LTR ERVK -709 319 1 1 1062 370 240 38 57 chr6 62588600 62588669 -86928368 - MT2B LTR ERVL -344 257 188 1 1062 779 108 23 0 chr6 62588669 62588799 -86928238 + L1Md_F2 LINE L1 6438 6570 -12 1 1062 441 0 0 0 chr6 62588802 62588851 -86928186 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 1 1062 370 240 38 57 chr6 62588851 62588883 -86928154 - MT2B LTR ERVL -414 187 156 1 1062 396 222 138 112 chr6 62588855 62589007 -86928030 - MT2B LTR ERVL -327 274 119 1 1062 297 116 0 0 chr6 62589023 62589066 -86927971 - MERVL_2A-int LTR ERVL 0 5761 5719 1 1062 2921 168 113 5 chr6 62589066 62589639 -86927398 - ORR1B1-int LTR MaLR -1323 640 6 1 1062 1460 186 68 34 chr6 62589637 62589959 -86927078 - ORR1B1 LTR MaLR -33 361 29 1 1062 2333 228 98 9 chr6 62589959 62590545 -86926492 - RMER1A Other Other -221 809 275 1 1062 365 299 87 19 chr6 62590549 62590815 -86926222 - L1M2 LINE L1 -1159 4984 4701 1 1062 266 259 0 69 chr6 62590988 62591046 -86925991 + ID4_ SINE ID 10 63 -20 1 1062 323 262 127 18 chr6 62591102 62591331 -86925706 - L1M2 LINE L1 -1537 4606 4353 1 1062 4248 156 17 8 chr6 62592036 62592997 -86924040 - Lx4A LINE L1 -693 6365 5387 1 1062 3027 165 19 2 chr6 62592987 62593474 -86923563 + Lx4A LINE L1 6345 6839 -219 1 1062 759 235 11 16 chr6 62593607 62593793 -86923244 + Lx2B LINE L1 6499 6683 -317 1 1062 4206 203 22 4 chr6 62593791 62594379 -86922658 - Lx2A1 LINE L1 -25 6983 6388 1 1062 321 47 0 0 chr6 62594379 62594422 -86922615 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1062 4206 203 22 4 chr6 62594422 62594616 -86922421 - Lx2A1 LINE L1 -621 6387 6188 1 1062 212 203 0 75 chr6 62594926 62595006 -86922031 + (TTATA)n Simple_repeat Simple_repeat 1 74 0 1 1062 2108 253 59 55 chr6 62595094 62595743 -86921294 - RMER1B Other Other -4 1062 412 1 1062 7610 93 4 1 chr6 62595750 62596616 -86920421 + L1_Mus3 LINE L1 5510 6376 -262 1 1062 428 51 17 0 chr6 62596616 62596675 -86920362 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 1 1062 7610 88 5 1 chr6 62596675 62596929 -86920108 + L1_Mus3 LINE L1 6377 6632 -6 1 1062 277 329 14 0 chr6 62597011 62597081 -86919956 + B4 SINE B4 95 165 -127 1 1062 2936 139 44 17 chr6 62597095 62597636 -86919401 - L1_Mm LINE L1 -1621 4262 3707 1 1062 22434 107 7 12 chr6 62598463 62602694 -86914343 - L1_Mus1 LINE L1 -2 6565 2361 1 1062 1022 137 0 25 chr6 62602685 62602842 -86914195 - L1VL1 LINE L1 -6258 164 12 1 1062 3157 183 62 9 chr6 62602837 62603493 -86913544 - L1_Mus1 LINE L1 -5489 1127 437 1 1062 3206 83 1 3 chr6 62603495 62603933 -86913104 - L1_Mus1 LINE L1 -107 6531 6055 1 1062 339 65 0 0 chr6 62604127 62604173 -86912864 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1062 25 31 0 0 chr6 62604234 62604266 -86912771 + AT_rich Low_complexity Low_complexity 1 32 0 1 1062 540 0 0 0 chr6 62606741 62606801 -86910236 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1062 447 19 0 0 chr6 62606801 62606852 -86910185 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1062 420 343 48 67 chr6 62606909 62607178 -86909859 - B4 SINE B4 -25 267 4 1 1062 2079 42 0 29 chr6 62607797 62608069 -86908968 + L1Md_F3 LINE L1 6307 6570 -14 1 1062 438 36 0 0 chr6 62609269 62609325 -86907712 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 1 1062 21 0 0 0 chr6 62609862 62609883 -86907154 + AT_rich Low_complexity Low_complexity 1 21 0 1 1062 240 292 88 22 chr6 62610518 62610609 -86906428 + MLT1H2 LTR MaLR 93 189 -300 1 1062 24 96 0 0 chr6 62611307 62611380 -86905657 + AT_rich Low_complexity Low_complexity 1 73 0 1 1062 857 328 145 72 chr6 62611982 62612306 -86904731 + Lx8 LINE L1 6671 7041 -432 1 1062 189 0 0 0 chr6 62612306 62612327 -86904710 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1062 857 341 120 35 chr6 62612327 62612712 -86904325 + Lx8 LINE L1 7042 7443 -30 1 1062 24 0 0 0 chr6 62612936 62612960 -86904077 + AT_rich Low_complexity Low_complexity 1 24 0 1 1062 305 100 20 0 chr6 62613921 62613971 -86903066 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1062 329 321 9 27 chr6 62614458 62614570 -86902467 - Lx8 LINE L1 -248 7225 7116 1 1062 369 0 0 0 chr6 62614575 62614616 -86902421 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1062 414 0 0 0 chr6 62615466 62615512 -86901525 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1062 326 337 26 93 chr6 62615699 62615925 -86901112 - Lx8 LINE L1 -151 7322 7112 1 1062 495 0 0 0 chr6 62615925 62615980 -86901057 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1062 290 324 14 16 chr6 62616896 62617069 -86899968 - L1MD2 LINE L1 -228 6014 5843 1 1062 3010 201 47 8 chr6 62617326 62617944 -86899093 + RLTR26 LTR ERVK 1 642 0 1 1062 1174 221 111 95 chr6 62618030 62618399 -86898638 - RLTR1B LTR ERV1 0 512 138 1 1062 818 229 68 11 chr6 62618674 62618864 -86898173 - B3 SINE B2 -15 201 1 1 1062 300 275 58 44 chr6 62619034 62619220 -86897817 - L1MC LINE L1 -543 5636 5447 1 1062 302 274 152 43 chr6 62619242 62619452 -86897585 - L1MDa LINE L1 -4541 2092 1860 1 1062 305 302 52 0 chr6 62619581 62619748 -86897289 + L1MC LINE L1 4104 4280 -1866 1 1062 180 77 0 0 chr6 62620112 62620138 -86896899 + L4 LINE RTE 916 941 -1088 1 1062 333 0 0 0 chr6 62620446 62620483 -86896554 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1062 713 273 17 34 chr6 62620483 62620661 -86896376 - B3 SINE B2 -41 175 1 1 1062 1897 207 14 0 chr6 62620747 62621099 -86895938 + ORR1B2 LTR MaLR 3 359 -8 1 1062 25 65 0 0 chr6 62621234 62621280 -86895757 + AT_rich Low_complexity Low_complexity 1 46 0 1 1062 2706 180 195 84 chr6 62621374 62622175 -86894862 + RMER19B LTR ERVK 1 890 -12 1 1062 288 345 25 22 chr6 62622196 62622472 -86894565 - Lx9 LINE L1 -111 7533 7257 1 1062 1028 299 93 21 chr6 62622609 62623081 -86893956 - Lx9 LINE L1 -494 7150 6645 1 1062 592 308 139 41 chr6 62623180 62624029 -86893008 - L1MDa LINE L1 -4860 1773 842 1 1062 720 35 0 0 chr6 62624537 62624624 -86892413 + (TTTA)n Simple_repeat Simple_repeat 2 88 0 1 1062 967 63 79 0 chr6 62624624 62624750 -86892287 - B1_Mus1 SINE Alu -12 136 1 1 1062 988 23 15 15 chr6 62624849 62624980 -86892057 + (GAAA)n Simple_repeat Simple_repeat 1 131 0 1 1062 180 0 0 0 chr6 62625056 62625076 -86891961 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1062 3414 147 12 7 chr6 62625130 62625707 -86891330 - Lx3A LINE L1 -5 6976 6397 2 1062 1214 96 42 11 chr6 62625707 62625897 -86891140 - Lx3A LINE L1 -719 6262 6067 2 1062 210 143 0 0 chr6 62626018 62626053 -86890984 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 2 1062 3949 142 24 11 chr6 62628584 62629240 -86887797 - Lx3A LINE L1 -8 6973 6309 2 1062 772 83 26 38 chr6 62629963 62630093 -86886944 + Lx3A LINE L1 6196 6327 -654 2 1062 276 89 0 82 chr6 62630086 62630147 -86886890 + Lx3_Mus LINE L1 6946 7001 -8 2 1062 276 30 0 0 chr6 62630180 62630213 -86886824 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2 1062 224 315 105 32 chr6 62631448 62631543 -86885494 + B1F1 SINE Alu 8 109 -40 2 1062 249 57 0 0 chr6 62632001 62632036 -86885001 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1062 255 31 0 0 chr6 62632037 62632069 -86884968 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1062 22 35 0 0 chr6 62632272 62632301 -86884736 + AT_rich Low_complexity Low_complexity 1 29 0 2 1062 939 236 135 32 chr6 62632966 62633109 -86883928 + ORR1C1 LTR MaLR 1 174 -204 2 1062 342 0 0 0 chr6 62633109 62633147 -86883890 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1062 939 236 135 32 chr6 62633147 62633344 -86883693 + ORR1C1 LTR MaLR 175 376 -2 2 1062 446 287 0 39 chr6 62633421 62633548 -86883489 + B1_Mur2 SINE Alu 28 149 0 2 1062 231 270 113 20 chr6 62634939 62635090 -86881947 + L1MEc LINE L1 713 877 -5523 2 1062 4137 172 14 2 chr6 62635583 62636375 -86880662 - Lx2B LINE L1 -894 4983 4183 2 1062 643 165 38 0 chr6 62636377 62636510 -86880527 + Lx2B LINE L1 4951 5088 -798 2 1062 372 161 7 21 chr6 62636520 62636660 -86880377 + T-rich Low_complexity Low_complexity 2 139 0 2 1062 26498 140 32 8 chr6 62636754 62639824 -86877213 - L1_Mus3 LINE L1 -4 6634 3456 2 1062 4696 89 1 8 chr6 62639824 62640477 -86876560 - L1Md_F2 LINE L1 0 6582 5934 2 1062 26498 151 30 9 chr6 62640477 62643445 -86873592 - L1_Mus3 LINE L1 -2428 3455 447 2 1062 6081 207 50 39 chr6 62643437 62645335 -86871702 + Lx2B LINE L1 5073 6997 -3 2 1062 2470 71 6 3 chr6 62645517 62645857 -86871180 + L1_Mus2 LINE L1 6224 6564 -2 2 1062 21 0 0 0 chr6 62645870 62645891 -86871146 + AT_rich Low_complexity Low_complexity 1 21 0 2 1062 315 312 216 26 chr6 62646489 62646874 -86870163 + L1MEc LINE L1 2567 3024 -3295 2 1062 307 200 10 133 chr6 62646995 62647093 -86869944 - MTE2a LTR MaLR 0 379 294 2 1062 1099 298 116 36 chr6 62647476 62648743 -86868294 + L1_Rod LINE L1 1522 2958 -2889 2 1062 1207 297 52 16 chr6 62648905 62649291 -86867746 - MTD LTR MaLR -19 400 1 2 1062 264 277 49 10 chr6 62649299 62649401 -86867636 + L1MEc LINE L1 4233 4338 -1975 2 1062 257 182 0 100 chr6 62649412 62649503 -86867534 + L1MEc LINE L1 5011 5123 -1193 2 1062 189 0 0 0 chr6 62649623 62649644 -86867393 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1062 893 332 99 10 chr6 62650021 62650508 -86866529 + Lx8 LINE L1 6373 6902 -571 2 1062 212 339 113 26 chr6 62650557 62650672 -86866365 - B3 SINE B2 0 216 92 2 1062 342 330 0 0 chr6 62650684 62650775 -86866262 + Lx8 LINE L1 6549 6639 -834 2 1062 2415 168 59 24 chr6 62650811 62651322 -86865715 - RLTR31_Mm LTR ERVK -32 529 1 2 1062 3448 200 32 49 chr6 62651323 62652205 -86864832 - RMER3D-int LTR ERVK -1 2841 1975 2 132 992 213 79 72 chr6 62652314 62652733 -86864304 + RMER3D-int LTR ERVK 111 869 -1973 2 1063 2594 177 4 34 chr6 62652746 62653284 -86863753 + RMER3D-int LTR ERVK 1022 1543 -1299 2 1063 1267 190 26 19 chr6 62653303 62653571 -86863466 + RMER3D-int LTR ERVK 1532 1801 -1041 2 1063 387 0 0 0 chr6 62653571 62653614 -86863423 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1063 21 36 0 0 chr6 62653617 62653645 -86863392 + AT_rich Low_complexity Low_complexity 1 28 0 2 1063 37840 30 4 0 chr6 62653782 62660122 -86856915 - L1Md_T LINE L1 0 6585 123 2 1063 348 163 32 11 chr6 62660124 62660217 -86856820 + RMER3D-int LTR ERVK 1162 1256 -1070 2 1063 1868 172 12 52 chr6 62660198 62660603 -86856434 + RMER3D-int LTR ERVK 1907 2295 -547 2 1063 342 67 0 0 chr6 62661004 62661049 -86855988 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1063 231 258 0 0 chr6 62661050 62661116 -86855921 - RCHARR1 DNA MER1_type -464 510 445 2 1063 1889 272 97 43 chr6 62661538 62662372 -86854665 + RCHARR1 DNA MER1_type 8 883 -91 2 1063 384 22 0 0 chr6 62662372 62662417 -86854620 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1063 1889 272 97 43 chr6 62662417 62662435 -86854602 + RCHARR1 DNA MER1_type 884 906 -68 2 1063 281 321 71 47 chr6 62662658 62662828 -86854209 - MTD LTR MaLR 0 419 246 2 1063 646 333 14 42 chr6 62663055 62663340 -86853697 + B4A SINE B4 2 278 -14 2 1063 4235 257 131 23 chr6 62664775 62666339 -86850698 - Lx9 LINE L1 -50 7594 5862 2 1063 24 32 0 0 chr6 62666802 62666833 -86850204 + AT_rich Low_complexity Low_complexity 1 31 0 2 1063 274 299 69 92 chr6 62666855 62667072 -86849965 + LTR80B LTR ERVL 98 309 -275 2 1063 31 0 0 0 chr6 62667241 62667272 -86849765 + AT_rich Low_complexity Low_complexity 1 31 0 2 1063 499 329 29 0 chr6 62667637 62667777 -86849260 + RSINE1 SINE B4 2 145 -20 2 1063 834 76 14 7 chr6 62667780 62667926 -86849111 + (CA)n Simple_repeat Simple_repeat 2 148 0 2 1063 362 21 0 21 chr6 62668032 62668080 -86848957 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1063 26 30 0 0 chr6 62670518 62670551 -86846486 + AT_rich Low_complexity Low_complexity 1 33 0 2 1063 191 22 0 115 chr6 62670562 62670614 -86846423 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 2 1063 21 0 0 0 chr6 62671240 62671261 -86845776 + AT_rich Low_complexity Low_complexity 1 21 0 2 1063 180 0 0 0 chr6 62672968 62672988 -86844049 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2 1063 30340 78 3 1 chr6 62673006 62677794 -86839243 - L1Md_F2 LINE L1 -12 6570 1771 2 1063 543 152 0 0 chr6 62677794 62677886 -86839151 - L1VL1 LINE L1 -6149 273 182 2 1063 276 367 22 0 chr6 62678093 62678183 -86838854 - RSINE1 SINE B4 -18 147 56 2 1063 27 81 0 0 chr6 62678830 62678892 -86838145 + AT_rich Low_complexity Low_complexity 1 62 0 2 1063 1138 303 56 31 chr6 62679294 62679740 -86837297 + Lx8 LINE L1 6216 6672 -801 2 1063 399 41 0 0 chr6 62679755 62679804 -86837233 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 2 1063 1198 0 14 0 chr6 62679805 62679947 -86837090 + (TTTCC)n Simple_repeat Simple_repeat 4 147 0 2 1063 1303 329 73 24 chr6 62680044 62680673 -86836364 + Lx8 LINE L1 6663 7322 -151 2 1063 405 0 0 0 chr6 62680690 62680735 -86836302 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1063 4877 61 6 8 chr6 62680876 62681524 -86835513 - L1Md_F2 LINE L1 0 6582 5936 2 1063 3554 72 0 4 chr6 62681524 62681996 -86835041 - L1Md_F2 LINE L1 -284 5599 5130 2 1063 2778 48 0 0 chr6 62681995 62682331 -86834706 + L1Md_F2 LINE L1 5601 5936 -646 2 1063 245 51 26 0 chr6 62683239 62683278 -86833759 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1063 7290 116 68 10 chr6 62685106 62687217 -86829820 - Lx3A LINE L1 -3 6978 4742 2 1063 598 316 85 5 chr6 62687342 62687530 -86829507 - ID_B1 SINE B4 -8 216 14 2 1063 657 328 28 4 chr6 62688651 62688899 -86828138 - MER2 DNA MER2_type -1 344 91 2 1063 2870 85 31 3 chr6 62688980 62689369 -86827668 + MTB LTR MaLR 1 400 0 2 1063 286 386 68 29 chr6 62689793 62690100 -86826937 - L2 LINE L2 -398 3021 2703 2 1063 205 136 22 22 chr6 62690205 62690250 -86826787 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 2 1063 512 331 163 31 chr6 62690412 62690737 -86826300 - MTEa LTR MaLR -9 370 3 2 1063 630 297 99 35 chr6 62690752 62691094 -86825943 - MTEa-int LTR MaLR -13 1567 1204 2 1063 902 299 16 16 chr6 62691113 62691368 -86825669 - MTEa LTR MaLR -124 255 1 2 1063 405 0 0 0 chr6 62691630 62691675 -86825362 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1063 468 51 0 0 chr6 62691770 62691829 -86825208 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1063 1956 191 100 5 chr6 62691831 62692242 -86824795 - RLTR20B2 LTR ERVK -108 452 3 2 1063 380 317 46 40 chr6 62692250 62692401 -86824636 - B3A SINE B2 -46 152 1 2 1063 672 274 29 15 chr6 62692529 62692733 -86824304 + MTD LTR MaLR 1 207 -214 2 1063 4179 204 42 18 chr6 62693105 62694312 -86822725 + L1VL4 LINE L1 827 2050 -3836 2 1063 417 20 0 0 chr6 62694312 62694362 -86822675 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1063 4179 196 37 17 chr6 62694362 62694520 -86822517 + L1VL4 LINE L1 2051 2220 -3666 2 1063 330 24 0 0 chr6 62694516 62694557 -86822480 - L1_Mm LINE L1 -626 5257 5217 2 1063 7867 81 8 0 chr6 62694555 62695611 -86821426 + L1Md_F2 LINE L1 4523 5586 -297 2 1063 7245 77 10 5 chr6 62695612 62696585 -86820452 + L1Md_F2 LINE L1 5588 6565 -17 2 1063 991 107 13 0 chr6 62696614 62696763 -86820274 + MTA_Mm LTR MaLR 192 342 -54 2 1063 9818 182 29 182 chr6 62696775 62697710 -86819327 + L1VL4 LINE L1 2199 3071 -2806 2 1063 448 92 0 0 chr6 62697710 62697775 -86819262 + L1Md_F2 LINE L1 6499 6563 -19 2 1063 966 18 0 0 chr6 62697778 62697890 -86819147 + (GAA)n Simple_repeat Simple_repeat 2 113 0 2 1063 9818 182 29 182 chr6 62697890 62698056 -86818981 + L1VL4 LINE L1 3072 3147 -2730 2 1063 2314 84 21 53 chr6 62698056 62698435 -86818602 + BGLII LTR ERVK 1 367 -54 2 1063 614 13 0 13 chr6 62698435 62698511 -86818526 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 2 1063 9818 182 29 182 chr6 62698511 62700632 -86816405 + L1VL4 LINE L1 3148 5254 -623 2 1063 2613 236 46 5 chr6 62700633 62701247 -86815790 + Lx3C LINE L1 6334 6972 -4 2 1063 699 275 80 0 chr6 62701257 62701457 -86815580 + MTD LTR MaLR 196 411 -8 2 1063 24 32 0 0 chr6 62702487 62702518 -86814519 + AT_rich Low_complexity Low_complexity 1 31 0 2 1063 541 27 27 0 chr6 62702721 62702796 -86814241 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 2 1063 188 170 19 0 chr6 62703266 62703319 -86813718 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1063 2027 130 3 7 chr6 62703466 62703775 -86813262 - RLTR10E LTR ERVK -3 308 1 2 1063 19615 98 5 8 chr6 62703775 62706813 -86810224 - MMERVK10C-int LTR ERVK 0 7680 4623 2 1063 828 75 36 50 chr6 62707583 62707723 -86809314 - MMERVK10C-int LTR ERVK -2911 4670 4533 2 1063 491 196 9 35 chr6 62707748 62707864 -86809173 - MMETn-int LTR ERVK -2376 2468 2356 2 1063 3739 135 103 2 chr6 62707868 62708508 -86808529 - MMERVK10C-int LTR ERVK -3135 4271 3567 2 1063 657 202 0 0 chr6 62708534 62708653 -86808384 - MMERVK10C-int LTR ERVK -4653 2753 2635 2 1063 294 279 0 55 chr6 62708665 62708756 -86808281 - MMERVK10C-int LTR ERVK -4867 2539 2454 2 1063 465 211 92 0 chr6 62708773 62708882 -86808155 - RMER16-int LTR ERVK -5081 1056 938 2 1063 1319 191 146 15 chr6 62708885 62709320 -86807717 - RMER16-int LTR ERVK -5469 668 212 2 1063 2715 191 83 74 chr6 62709295 62710159 -86806878 - MMERVK10C-int LTR ERVK -6709 872 1 2 1063 1970 143 0 10 chr6 62710163 62710474 -86806563 - RLTR10E LTR ERVK -3 308 1 2 1063 23 78 0 0 chr6 62710568 62710619 -86806418 + AT_rich Low_complexity Low_complexity 1 51 0 2 1063 22 0 0 0 chr6 62710795 62710817 -86806220 + AT_rich Low_complexity Low_complexity 1 22 0 2 1063 4526 151 8 18 chr6 62711671 62712454 -86804583 - Lx3B LINE L1 -4 6969 6195 2 1063 5116 150 10 7 chr6 62712524 62713389 -86803648 - Lx2B LINE L1 -1 6999 6132 2 1063 300 131 0 28 chr6 62713395 62713466 -86803571 - Lx LINE L1 -1 6653 6585 2 1063 1103 98 26 0 chr6 62713466 62713619 -86803418 - Lx LINE L1 -208 6446 6290 2 1063 640 160 0 0 chr6 62713619 62713719 -86803318 + B2_Mm2 SINE B2 1 100 -95 2 1063 226 233 211 0 chr6 62713743 62713833 -86803204 - Lx3C LINE L1 -2 6974 6866 2 1063 258 295 27 0 chr6 62714074 62714186 -86802851 - L1_Mur3 LINE L1 -734 5146 5032 2 1063 653 276 138 40 chr6 62714198 62714671 -86802366 - L1_Mur3 LINE L1 -1469 2445 1951 3 1063 1495 245 58 32 chr6 62715124 62715773 -86801264 - Lx2B LINE L1 -14 6983 5976 3 1063 1316 104 0 0 chr6 62715769 62715951 -86801086 - L1_Mus3 LINE L1 -190 6448 6267 3 1063 694 149 0 9 chr6 62715943 62716051 -86800986 - Lx2B LINE L1 -496 6158 6052 3 1063 420 172 0 8 chr6 62716080 62716168 -86800869 - L1_Mur2 LINE L1 -623 5263 5182 3 1063 341 116 0 14 chr6 62716249 62716319 -86800718 - L1Md_F3 LINE L1 -1 6583 6515 3 1063 1062 151 0 0 chr6 62716319 62716498 -86800539 - L1_Mur2 LINE L1 -697 5180 5002 3 1063 5762 145 40 2 chr6 62716495 62717598 -86799439 + Lx2 LINE L1 5744 7000 0 3 1063 258 293 34 8 chr6 62718618 62718735 -86798302 - HAL1 LINE L1 -1368 1139 1020 3 1063 1789 241 34 87 chr6 62718995 62719491 -86797546 - RLTR18 LTR ERVK 0 616 147 3 1063 852 175 53 0 chr6 62719490 62719661 -86797376 - RLTR18 LTR ERVK -436 180 1 3 1063 331 269 0 206 chr6 62719752 62719883 -86797154 + RSINE1 SINE B4 3 106 -59 3 1063 210 37 0 0 chr6 62719893 62719920 -86797117 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1063 339 25 0 0 chr6 62719920 62719959 -86797078 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1063 370 344 49 31 chr6 62720268 62720493 -86796544 + L1M2 LINE L1 4527 4755 -1388 3 1063 360 311 97 58 chr6 62720493 62721115 -86795922 + L1_Mur3 LINE L1 5175 5820 -60 3 1063 2157 182 31 54 chr6 62721168 62721637 -86795400 + Lx3C LINE L1 709 1180 -5477 3 1063 2102 68 7 0 chr6 62721637 62721915 -86795122 + L1_Mus3 LINE L1 6358 6637 -1 3 1063 15485 193 54 58 chr6 62721915 62723186 -86793851 + Lx3C LINE L1 1181 2457 -3420 3 1063 1071 66 0 0 chr6 62723186 62723322 -86793715 + B1_Mus1 SINE Alu 1 136 -12 3 1063 15485 197 59 60 chr6 62723322 62724407 -86792630 + Lx3C LINE L1 2458 3382 -2495 3 1063 3252 48 5 0 chr6 62724407 62724801 -86792236 + MTA_Mm LTR MaLR 1 396 0 3 1063 15485 197 59 60 chr6 62724801 62726519 -86790518 + Lx3C LINE L1 3383 5232 -645 3 1063 423 0 0 0 chr6 62726519 62726566 -86790471 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1063 15485 217 50 124 chr6 62726566 62727452 -86789585 + Lx3C LINE L1 5233 5737 -146 3 1063 5930 187 18 5 chr6 62727449 62728720 -86788317 + Lx3C LINE L1 5468 6753 -223 3 1063 30 0 0 0 chr6 62728765 62728795 -86788242 + AT_rich Low_complexity Low_complexity 1 30 0 3 1063 6643 157 41 18 chr6 62730216 62731443 -86785594 + Lx2B LINE L1 5741 6995 -5 3 1063 28 29 0 0 chr6 62731781 62731816 -86785221 + AT_rich Low_complexity Low_complexity 1 35 0 3 1063 230 343 19 47 chr6 62732088 62732195 -86784842 + PB1D10 SINE Alu 13 116 -1 3 1063 421 230 302 6 chr6 62732229 62732391 -86784646 + B3 SINE B2 2 211 -5 3 1063 24 67 0 0 chr6 62732393 62732438 -86784599 + AT_rich Low_complexity Low_complexity 1 45 0 3 1063 3814 229 98 19 chr6 62732448 62734124 -86782913 + Lx6 LINE L1 4941 6757 -703 3 1063 387 0 0 0 chr6 62734124 62734167 -86782870 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 3 1063 2194 287 125 10 chr6 62734167 62734801 -86782236 + Lx6 LINE L1 6758 7459 -1 3 1063 317 332 65 75 chr6 62735846 62736139 -86780898 - L1M4 LINE L1 -386 5793 5504 3 1063 22 0 0 0 chr6 62736235 62736257 -86780780 + AT_rich Low_complexity Low_complexity 1 22 0 3 1063 839 166 55 12 chr6 62736394 62736559 -86780478 + ORR1D1 LTR MaLR 10 181 -193 3 1063 7081 111 29 1 chr6 62736568 62737606 -86779431 - Lx LINE L1 0 6654 5588 3 1063 863 192 11 44 chr6 62737617 62737649 -86779388 + ORR1D1 LTR MaLR 201 227 -147 3 1063 1647 154 72 90 chr6 62737649 62738049 -86778988 + RLTR9C LTR ERVK 1 393 0 3 1063 863 192 11 44 chr6 62738049 62738196 -86778841 + ORR1D1 LTR MaLR 228 374 0 3 1063 314 325 33 0 chr6 62738515 62738635 -86778402 - L1M4 LINE L1 -1367 4779 4656 3 1063 325 243 92 33 chr6 62738908 62739061 -86777976 + ERVL-int LTR ERVL 2715 2876 -2881 3 1063 807 11 0 0 chr6 62739436 62739528 -86777509 + (TC)n Simple_repeat Simple_repeat 1 92 0 3 1063 3313 208 117 51 chr6 62739641 62740812 -86776225 - RMER12 LTR ERVK -11 1837 92 3 1063 585 96 0 0 chr6 62740811 62740894 -86776143 - MTB_Mm LTR MaLR -324 83 1 3 1063 242 361 0 20 chr6 62740895 62740994 -86776043 - ORR1E LTR MaLR -168 191 95 3 1063 1443 192 65 111 chr6 62741007 62741376 -86775661 + ORR1B1 LTR MaLR 41 392 -2 3 1063 196 211 52 17 chr6 62741421 62741479 -86775558 + L2 LINE L2 2836 2895 -524 3 1063 492 358 10 0 chr6 62741572 62741779 -86775258 + ERVL-B4-int LTR ERVL 4774 4982 -732 3 1063 767 270 142 36 chr6 62741781 62742112 -86774925 - ORR1D2 LTR MaLR -4 366 1 3 1063 423 253 0 0 chr6 62742112 62742199 -86774838 - ORR1D2-int LTR MaLR 0 1370 1284 3 1063 2267 282 68 61 chr6 62742202 62743119 -86773918 - ORR1D2-int LTR MaLR -384 986 64 3 1063 717 329 105 41 chr6 62743136 62743478 -86773559 - ORR1D2 LTR MaLR -6 364 1 3 1063 28 79 0 0 chr6 62744178 62744241 -86772796 + AT_rich Low_complexity Low_complexity 1 63 0 3 1063 288 77 0 0 chr6 62744923 62744962 -86772075 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1063 184 302 0 19 chr6 62745530 62745584 -86771453 + L2 LINE L2 2042 2094 -1325 3 1063 327 303 92 80 chr6 62748016 62748278 -86768759 + HERV16-int LTR ERVL 2680 2944 -2052 3 1063 686 321 108 54 chr6 62749060 62749853 -86767184 + L1MC3 LINE L1 6920 7755 -30 3 1063 685 338 17 51 chr6 62750466 62750762 -86766275 + B4A SINE B4 7 292 0 3 1063 316 211 0 31 chr6 62751879 62751977 -86765060 + A-rich Low_complexity Low_complexity 2 96 0 3 1063 242 188 0 55 chr6 62752047 62752120 -86764917 - MLT2B1 LTR ERVL 0 567 499 3 1063 296 211 0 0 chr6 62752134 62752191 -86764846 - MT2A LTR ERVL -476 57 1 3 1063 263 276 40 0 chr6 62753335 62753411 -86763626 - MLT1A0 LTR MaLR 0 365 287 3 1063 435 173 0 0 chr6 62753656 62753737 -86763300 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1063 23 33 0 0 chr6 62753763 62753793 -86763244 + AT_rich Low_complexity Low_complexity 1 30 0 3 1063 24 0 0 0 chr6 62753862 62753886 -86763151 + AT_rich Low_complexity Low_complexity 1 24 0 3 1063 1258 209 65 7 chr6 62754485 62754794 -86762243 - Lx3C LINE L1 -2 6974 6648 3 1063 467 117 0 13 chr6 62754794 62754872 -86762165 - L1_Mur2 LINE L1 -1188 4689 4613 3 1063 3038 159 136 2 chr6 62754870 62755468 -86761569 + L1_Mur2 LINE L1 3956 4633 -1244 3 1063 240 59 0 0 chr6 62755475 62755509 -86761528 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 3 1063 972 106 0 8 chr6 62755513 62755646 -86761391 - B1_Mus1 SINE Alu -15 133 2 3 1063 195 69 0 0 chr6 62755679 62755708 -86761329 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 3 1063 733 146 15 0 chr6 62756123 62756260 -86760777 + (TCTA)n Simple_repeat Simple_repeat 1 139 0 3 1063 2819 245 85 17 chr6 62757651 62758412 -86758625 - Lx9 LINE L1 -457 7187 6375 3 1063 183 292 62 0 chr6 62758481 62758546 -86758491 - L2 LINE L2 -1285 2134 2066 3 1063 309 304 113 17 chr6 62760280 62760511 -86756526 + L1M4c LINE L1 1465 1717 -4667 3 1063 378 370 88 24 chr6 62760539 62760794 -86756243 + B4A SINE B4 3 272 -20 3 1063 315 0 0 0 chr6 62760865 62760900 -86756137 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1063 760 201 211 0 chr6 62761545 62761744 -86755293 - RMER5 LTR ERV1 -9 525 285 3 1063 7635 76 0 5 chr6 62761744 62762945 -86754092 - L1Md_F2 LINE L1 -4 6578 5384 3 1063 844 233 82 45 chr6 62762945 62763188 -86753849 - RMER5 LTR ERV1 -236 298 47 3 1063 731 270 59 21 chr6 62763805 62764043 -86752994 + Lx6 LINE L1 7212 7458 -2 3 1063 236 130 0 0 chr6 62764268 62764314 -86752723 - B1_Mus2 SINE Alu 0 147 102 3 1063 279 310 25 50 chr6 62764513 62764632 -86752405 + RLTR14 LTR ERV1 267 382 0 3 1063 465 97 0 0 chr6 62765973 62766045 -86750992 + (TA)n Simple_repeat Simple_repeat 1 72 0 3 1063 579 40 0 0 chr6 62766047 62766121 -86750916 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1063 31 0 0 0 chr6 62766642 62766673 -86750364 + AT_rich Low_complexity Low_complexity 1 31 0 3 1063 21 36 0 0 chr6 62767275 62767303 -86749734 + AT_rich Low_complexity Low_complexity 1 28 0 3 1063 2811 260 84 42 chr6 62768008 62769028 -86748009 - Lx9 LINE L1 0 7644 6582 3 1063 399 318 93 13 chr6 62769598 62769748 -86747289 + RSINE1 SINE B4 4 165 0 3 1063 782 200 209 21 chr6 62769864 62770099 -86746938 - ORR1C2 LTR MaLR 0 384 106 3 1063 1419 199 62 35 chr6 62770868 62771207 -86745830 - RLTR28 LTR ERVL -2 522 175 3 1063 298 224 0 133 chr6 62771207 62771305 -86745732 + RMER20B LTR ERVK 390 474 -153 3 1063 286 250 0 0 chr6 62771313 62771381 -86745656 - L1_Mus2 LINE L1 -604 7092 7025 3 1063 34968 67 1 3 chr6 62771388 62776563 -86740474 - L1Md_F2 LINE L1 -1 6584 1420 3 1063 1609 37 0 0 chr6 62776563 62776754 -86740283 - B2_Mm1a SINE B2 -1 192 2 3 1063 34968 68 10 20 chr6 62776754 62777671 -86739366 - L1Md_F2 LINE L1 -4467 1419 418 3 1063 2287 301 71 87 chr6 62777664 62778355 -86738682 - L1_Mus2 LINE L1 -655 7041 6331 3 1063 423 0 0 0 chr6 62778355 62778402 -86738635 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1063 2287 301 71 87 chr6 62778402 62778476 -86738561 - L1_Mus2 LINE L1 -1366 6330 6258 3 1063 543 97 11 0 chr6 62778476 62778569 -86738468 - L1_Mus2 LINE L1 0 6566 6473 3 1063 5874 101 3 11 chr6 62778569 62779896 -86737141 - L1_Mus2 LINE L1 -274 6292 4975 3 1063 3553 220 72 15 chr6 62781165 62782156 -86734881 - L1_Mur3 LINE L1 -552 5328 4282 3 1063 3201 171 155 72 chr6 62782438 62783271 -86733766 - RMER19B LTR ERVK 0 902 1 3 1063 198 0 0 0 chr6 62783282 62783304 -86733733 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1064 7290 85 11 2 chr6 62784625 62786080 -86730957 - L1_Mus2 LINE L1 0 6566 5099 3 1064 26 74 0 0 chr6 62786269 62786323 -86730714 + AT_rich Low_complexity Low_complexity 1 54 0 3 1064 24 0 0 0 chr6 62786420 62786444 -86730593 + AT_rich Low_complexity Low_complexity 1 24 0 3 1064 2292 100 14 6 chr6 62786460 62786811 -86730226 - Lx LINE L1 0 6654 6301 3 1064 1696 177 50 50 chr6 62786842 62787222 -86729815 + ORR1C2 LTR MaLR 5 384 0 3 1064 290 289 33 0 chr6 62787244 62787334 -86729703 - Charlie4a DNA MER1_type -301 207 115 3 1064 594 0 0 0 chr6 62787953 62788019 -86729018 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1064 231 175 0 0 chr6 62788420 62788477 -86728560 + T-rich Low_complexity Low_complexity 1 57 0 3 1064 1148 62 7 0 chr6 62788500 62788646 -86728391 - B1_Mus2 SINE Alu 0 147 1 3 1064 324 0 0 0 chr6 62788938 62788974 -86728063 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1064 303 85 0 0 chr6 62789274 62789321 -86727716 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1064 525 83 0 0 chr6 62789321 62789405 -86727632 + (GA)n Simple_repeat Simple_repeat 2 85 0 3 1064 6655 99 19 6 chr6 62789691 62791023 -86726014 - L1_Mus2 LINE L1 -1 6565 5217 3 1064 4459 109 4 29 chr6 62791021 62791719 -86725318 + L1_Mus2 LINE L1 4523 5203 -680 3 1064 887 259 68 71 chr6 62791945 62792519 -86724518 + Lx9 LINE L1 4094 4665 -1182 3 1064 839 245 104 30 chr6 62792507 62792580 -86724457 + Lx9 LINE L1 5455 5525 -322 3 1064 4236 99 5 2 chr6 62792580 62793175 -86723862 + L1_Mus3 LINE L1 6037 6633 -5 4 1064 839 286 69 45 chr6 62793175 62793708 -86723329 + Lx9 LINE L1 5526 6113 -1531 3 1064 237 237 0 33 chr6 62793733 62793794 -86723243 + MTC LTR MaLR 359 417 -4 4 1064 1056 104 7 0 chr6 62793823 62793967 -86723070 + B1_Mm SINE Alu 3 147 0 4 1064 209 109 0 21 chr6 62793968 62794015 -86723022 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 4 1064 756 126 0 0 chr6 62794008 62794127 -86722910 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 4 1064 22 35 0 0 chr6 62794439 62794468 -86722569 + AT_rich Low_complexity Low_complexity 1 29 0 4 1064 2779 44 9 3 chr6 62794760 62795103 -86721934 - IAPLTR4 LTR ERVK 0 345 1 4 1064 292 298 81 13 chr6 62795133 62795442 -86721595 + L1M2 LINE L1 3191 3520 -2623 4 1064 354 317 19 0 chr6 62795452 62795556 -86721481 + PB1D9 SINE Alu 12 117 -3 4 1064 667 199 12 0 chr6 62795567 62795705 -86721332 + GA-rich Low_complexity Low_complexity 2 141 0 4 1064 1578 11 0 0 chr6 62795705 62795885 -86721152 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1064 667 199 12 0 chr6 62795885 62795912 -86721125 + polypurine Low_complexity Low_complexity 142 168 0 4 1064 386 216 0 0 chr6 62795912 62796000 -86721037 + GA-rich Low_complexity Low_complexity 2 89 0 4 1064 459 286 239 8 chr6 62796025 62796402 -86720635 + L1M2 LINE L1 3529 3992 -2151 4 1064 489 237 108 92 chr6 62796497 62796692 -86720345 + RMER15 LTR ERVL 291 488 -87 4 1064 26 0 0 0 chr6 62796827 62796853 -86720184 + AT_rich Low_complexity Low_complexity 1 26 0 4 1064 4247 60 9 0 chr6 62796853 62797386 -86719651 - L1_Mus1 LINE L1 0 6567 6030 4 1064 1796 231 14 21 chr6 62797496 62797933 -86719104 - RMER6D LTR ERVK 0 720 307 4 1064 1809 143 15 63 chr6 62797933 62798268 -86718769 + ORR1A4 LTR MaLR 1 319 -10 4 1064 652 216 46 40 chr6 62798231 62798405 -86718632 - RMER6D LTR ERVK -362 358 184 4 1064 8159 44 5 0 chr6 62798433 62799803 -86717234 - L1Md_F2 LINE L1 0 6582 5206 4 1064 5052 69 6 0 chr6 62799819 62800486 -86716551 - L1Md_F2 LINE L1 0 6582 5912 4 1064 401 21 0 0 chr6 62800486 62800533 -86716504 + L1Md_F2 LINE L1 5861 5907 -675 4 1064 2596 321 62 88 chr6 62800533 62801157 -86715880 - MTE-int LTR MaLR -323 1257 614 4 1064 427 94 11 34 chr6 62801157 62801245 -86715792 - L1_Mus3 LINE L1 -12 6626 6541 4 1064 2596 321 62 88 chr6 62801245 62801485 -86715552 - MTE-int LTR MaLR -967 613 427 4 1064 306 0 0 0 chr6 62801485 62801519 -86715518 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1064 405 0 0 0 chr6 62801519 62801563 -86715474 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1064 2596 321 62 88 chr6 62801563 62801971 -86715066 - MTE-int LTR MaLR -1154 426 17 4 1064 28 48 0 0 chr6 62802117 62802159 -86714878 + AT_rich Low_complexity Low_complexity 1 42 0 4 1064 329 383 76 51 chr6 62802249 62802524 -86714513 + B4A SINE B4 1 282 -10 4 1064 276 311 108 8 chr6 62802451 62802571 -86714466 + RMER12 LTR ERVK 696 827 -495 4 1064 317 348 14 43 chr6 62802618 62802759 -86714278 - MTE2b LTR MaLR -38 341 205 4 1064 30 27 0 0 chr6 62803227 62803264 -86713773 + AT_rich Low_complexity Low_complexity 1 37 0 4 1064 23 54 0 0 chr6 62803855 62803892 -86713145 + AT_rich Low_complexity Low_complexity 1 37 0 4 1064 384 303 36 75 chr6 62803952 62804069 -86712968 + L1MC3 LINE L1 5074 5184 -962 4 1064 372 305 73 20 chr6 62804069 62804273 -86712764 + B3 SINE B2 2 216 0 4 1064 384 303 36 75 chr6 62804273 62804490 -86712547 + L1MC3 LINE L1 5185 5395 -751 4 1064 21 36 0 0 chr6 62804490 62804518 -86712519 + AT_rich Low_complexity Low_complexity 1 28 0 4 1064 231 311 11 0 chr6 62804662 62804752 -86712285 + L1MC3 LINE L1 5655 5745 -2040 4 1064 306 379 36 49 chr6 62804873 62805120 -86711917 + L1MC3 LINE L1 5888 6131 -1654 4 1064 231 288 0 0 chr6 62807871 62807930 -86709107 + MER92C LTR ERV1 496 554 0 4 1064 1203 232 185 0 chr6 62808091 62808405 -86708632 - ORR1D1 LTR MaLR -1 373 2 4 1064 385 295 19 0 chr6 62809113 62809218 -86707819 - ID_B1 SINE B4 0 224 118 4 1064 328 175 162 0 chr6 62809963 62810043 -86706994 + ORR1C2 LTR MaLR 1 93 -281 4 1064 480 91 0 0 chr6 62810045 62810111 -86706926 + Lx LINE L1 6031 6096 -558 4 1064 1604 146 123 40 chr6 62810106 62810456 -86706581 + L1_Mus4 LINE L1 6250 6628 -8 4 1064 302 281 42 58 chr6 62810456 62810616 -86706421 + ORR1C2 LTR MaLR 87 265 -119 4 1064 661 234 117 5 chr6 62810604 62810810 -86706227 + ORR1C2 LTR MaLR 156 384 0 4 1064 334 337 163 29 chr6 62811157 62811710 -86705327 - HAL1 LINE L1 -301 2206 1580 4 1064 513 0 0 0 chr6 62812260 62812317 -86704720 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1064 315 0 0 0 chr6 62812317 62812351 -86704686 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1064 24 0 0 0 chr6 62813584 62813608 -86703429 + AT_rich Low_complexity Low_complexity 1 24 0 4 1064 331 260 52 10 chr6 62815320 62815417 -86701620 - RSINE1 SINE B4 -38 127 27 4 1064 327 206 40 80 chr6 62815781 62815871 -86701166 - ORR1D1 LTR MaLR -10 368 283 4 1064 2370 118 3 5 chr6 62815871 62816245 -86700792 - MTB_Mm LTR MaLR 0 407 35 4 1064 1243 216 26 11 chr6 62816257 62816529 -86700508 - ORR1D1 LTR MaLR -98 276 1 4 1064 341 257 19 9 chr6 62816629 62816735 -86700302 + Lx2B LINE L1 6883 6989 -11 4 1064 22 0 0 0 chr6 62816875 62816897 -86700140 + AT_rich Low_complexity Low_complexity 1 22 0 4 1064 22 0 0 0 chr6 62817054 62817076 -86699961 + AT_rich Low_complexity Low_complexity 1 22 0 4 1064 249 355 122 54 chr6 62818502 62818838 -86698199 - MLT1B LTR MaLR -2 388 30 4 1064 232 339 86 31 chr6 62819073 62819584 -86697453 + L1MCb LINE L1 647 1185 -4860 4 1064 281 24 49 0 chr6 62820016 62820057 -86696980 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1064 249 242 0 0 chr6 62820303 62820365 -86696672 + L1MA9 LINE L1 6241 6302 -10 4 1064 344 319 90 0 chr6 62821455 62821599 -86695438 + RSINE1 SINE B4 5 161 -4 4 1064 6123 34 5 11 chr6 62821894 62822636 -86694401 + L1Md_F3 LINE L1 5845 6582 -2 4 1064 228 0 44 67 chr6 62822718 62822763 -86694274 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 4 1064 2256 114 112 114 chr6 62822874 62823340 -86693697 - Lx2A LINE L1 0 7008 6544 4 1064 1544 171 7 3 chr6 62823335 62823629 -86693408 + Lx6 LINE L1 4548 4842 -1035 4 1064 456 168 264 34 chr6 62823786 62823844 -86693193 + Lx6 LINE L1 5699 5795 -85 4 1064 6207 93 10 2 chr6 62823844 62824718 -86692319 - L1_Mus3 LINE L1 -6 6632 5752 4 1064 456 217 188 31 chr6 62824718 62824846 -86692191 + Lx6 LINE L1 5796 5923 -1773 4 1064 31 44 0 0 chr6 62824901 62824946 -86692091 + AT_rich Low_complexity Low_complexity 1 45 0 4 1064 5190 248 97 7 chr6 62825137 62826488 -86690549 + Lx6 LINE L1 5984 7456 -4 4 1064 287 196 0 0 chr6 62826569 62826625 -86690412 + Lx9 LINE L1 6914 6969 -675 4 1064 325 273 67 94 chr6 62826801 62827068 -86689969 - Lx8 LINE L1 0 7473 7214 4 1064 693 75 40 33 chr6 62827068 62827220 -86689817 + (TCTCTG)n Simple_repeat Simple_repeat 4 156 0 4 1064 1065 90 0 0 chr6 62827221 62827398 -86689639 + (TC)n Simple_repeat Simple_repeat 2 178 0 4 1064 521 398 34 14 chr6 62827418 62827859 -86689178 - Lx7 LINE L1 -515 7181 6732 4 1064 294 346 19 6 chr6 62827908 62828068 -86688969 - L1_Mur3 LINE L1 -3562 2318 2157 4 1064 40682 11 0 6 chr6 62828104 62834306 -86682731 - L1Md_A LINE L1 0 6582 422 4 1064 1145 272 25 20 chr6 62834539 62834937 -86682100 - L1_Mur3 LINE L1 -4008 1872 1473 4 1064 465 103 0 0 chr6 62834937 62835005 -86682032 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1064 7166 109 24 0 chr6 62836493 62837586 -86679451 - L1_Mm LINE L1 -2319 3564 2446 4 1064 3696 88 30 8 chr6 62837586 62838114 -86678923 + L1_Mus1 LINE L1 6028 6567 0 4 1064 33 66 0 0 chr6 62838114 62838175 -86678862 + AT_rich Low_complexity Low_complexity 1 61 0 4 1064 429 297 22 7 chr6 62838945 62839084 -86677953 - RMER15 LTR ERVL -14 561 421 4 1064 189 0 0 0 chr6 62839434 62839455 -86677582 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1064 4105 27 0 2 chr6 62839658 62840140 -86676897 - L1Md_A LINE L1 -1 6581 6101 4 1064 1711 158 56 28 chr6 62840281 62840601 -86676436 - ORR1A4 LTR MaLR 0 329 1 4 1064 331 293 94 80 chr6 62841236 62841588 -86675449 - RMER10A LTR ERVL 0 442 86 4 1064 1727 138 17 24 chr6 62841908 62842204 -86674833 + RMER6C LTR ERVK 1 294 -396 4 1064 4660 243 50 53 chr6 62842214 62842691 -86674346 - RMER12 LTR ERVK 0 1322 830 4 1064 216 111 0 0 chr6 62842691 62842727 -86674310 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 4 1064 4660 243 50 53 chr6 62842727 62843575 -86673462 - RMER12 LTR ERVK -493 829 1 4 1064 1132 229 133 18 chr6 62843575 62843955 -86673082 + RMER6C LTR ERVK 297 720 0 4 1064 291 204 28 9 chr6 62844062 62844171 -86672866 + GA-rich Low_complexity Low_complexity 2 112 0 4 1064 781 219 138 120 chr6 62844224 62844666 -86672371 - RLTR19-int LTR ERVK -2182 3955 3506 4 1064 424 292 76 111 chr6 62844685 62845059 -86671978 - RLTR19-int LTR ERVK -2955 3182 2854 4 1064 213 65 0 0 chr6 62845900 62845931 -86671106 + (CAA)n Simple_repeat Simple_repeat 2 32 0 4 1064 273 245 211 58 chr6 62846987 62847143 -86669894 + MER67D LTR ERV1 9 188 -326 4 1064 233 208 156 65 chr6 62847265 62847342 -86669695 + RLTR9B2 LTR ERVK 102 185 -235 4 1064 23 0 0 0 chr6 62847472 62847495 -86669542 + AT_rich Low_complexity Low_complexity 1 23 0 4 1064 8036 129 42 9 chr6 62847745 62849407 -86667630 - Lx3A LINE L1 -6 6975 5247 4 1064 202 111 0 69 chr6 62849410 62849468 -86667569 + T-rich Low_complexity Low_complexity 1 54 0 4 1064 574 129 0 14 chr6 62849475 62849583 -86667454 - Lx3A LINE L1 -611 5275 5150 4 1064 2447 136 5 13 chr6 62849555 62849936 -86667101 + Lx3A LINE L1 6198 6575 -406 4 1064 8901 105 24 4 chr6 62849931 62852064 -86664973 - Lx3A LINE L1 -3345 2541 366 4 1064 312 182 0 0 chr6 62852064 62852119 -86664918 - Lx3A LINE L1 -6926 58 4 4 1064 221 244 0 0 chr6 62852169 62852214 -86664823 + (CTTA)n Simple_repeat Simple_repeat 2 46 0 4 1064 226 316 12 12 chr6 62852444 62852524 -86664513 - MER5A1 DNA MER1_type -1 165 86 4 1064 617 269 77 55 chr6 62852723 62852904 -86664133 - B3 SINE B2 -8 187 3 4 1064 317 59 39 0 chr6 62852904 62852955 -86664082 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 4 1064 235 329 53 0 chr6 62852968 62853044 -86663993 - PB1D7 SINE Alu 0 120 41 4 1064 191 283 104 47 chr6 62853176 62853369 -86663668 + L2 LINE L2 1736 1939 -1480 4 1064 2243 178 46 67 chr6 62854178 62854745 -86662292 + Lx6 LINE L1 4328 4882 -998 4 1064 1509 250 121 5 chr6 62854754 62855280 -86661757 + Lx6 LINE L1 5351 5972 -1001 4 1064 3727 215 65 62 chr6 62855282 62856125 -86660912 - RMER13A LTR ERVK -5 855 10 4 1064 5401 242 87 25 chr6 62856136 62857532 -86659505 + Lx6 LINE L1 5961 7442 -18 4 1064 6882 238 22 30 chr6 62857590 62860344 -86656693 - Lx5 LINE L1 -40 7018 4290 4 1064 617 280 52 152 chr6 62860513 62860921 -86656116 + RMER20B LTR ERVK 214 580 -47 4 1064 1137 168 27 5 chr6 62861017 62861239 -86655798 - Lx5 LINE L1 -1581 4296 4070 4 1064 354 227 21 0 chr6 62861251 62861348 -86655689 - Lx5 LINE L1 -1777 4100 4002 4 1064 1274 239 62 62 chr6 62862364 62862735 -86654302 + ORR1D1 LTR MaLR 2 372 -2 4 1064 24 32 0 0 chr6 62863788 62863819 -86653218 + AT_rich Low_complexity Low_complexity 1 31 0 5 1064 1349 85 6 0 chr6 62863824 62864001 -86653036 - B2_Mm1t SINE B2 -14 179 2 5 1064 1914 199 17 45 chr6 62864445 62864908 -86652129 - RLTR31_Mur LTR ERVK -103 450 1 5 1064 859 312 20 8 chr6 62864909 62865158 -86651879 + MERVK26-int LTR ERVK 6667 6918 -1 5 1064 3150 53 8 0 chr6 62865336 62865729 -86651308 + MTA_Mm LTR MaLR 1 396 0 5 1064 4580 37 0 0 chr6 62866109 62866654 -86650383 + L1Md_T LINE L1 6038 6582 0 5 1064 759 22 0 0 chr6 62867550 62867639 -86649398 + (GA)n Simple_repeat Simple_repeat 2 90 0 5 1064 5280 87 24 10 chr6 62868111 62868908 -86648129 + RLTR13C2 LTR ERVK 1 893 0 5 1064 255 260 16 8 chr6 62870017 62870141 -86646896 + (TA)n Simple_repeat Simple_repeat 2 126 0 5 1064 281 248 8 64 chr6 62871170 62871295 -86645742 - PB1D7 SINE Alu -2 118 1 5 1064 367 355 41 0 chr6 62871922 62872094 -86644943 - MLT1C LTR MaLR -282 185 7 5 1064 854 251 68 0 chr6 62872937 62873128 -86643909 + B3 SINE B2 12 215 -1 5 1064 410 196 306 6 chr6 62873156 62873259 -86643778 - Lx9 LINE L1 -15 7629 7473 5 1064 375 23 0 0 chr6 62873259 62873303 -86643734 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1064 410 196 306 6 chr6 62873303 62873379 -86643658 - Lx9 LINE L1 -172 7472 7397 5 1064 269 236 27 14 chr6 62873708 62873781 -86643256 + GA-rich Low_complexity Low_complexity 2 75 0 5 1064 8013 125 47 20 chr6 62874046 62875365 -86641672 + Lx3B LINE L1 5617 6970 -3 5 1064 22 35 0 0 chr6 62875373 62875402 -86641635 + AT_rich Low_complexity Low_complexity 1 29 0 5 1064 423 0 0 0 chr6 62875470 62875517 -86641520 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1064 2429 229 132 37 chr6 62875517 62876328 -86640709 + RMER19B LTR ERVK 3 890 -12 5 1064 290 285 22 0 chr6 62876764 62876953 -86640084 + GA-rich Low_complexity Low_complexity 1 193 0 5 1064 241 110 68 0 chr6 62878049 62878122 -86638915 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 5 1064 266 318 57 0 chr6 62878193 62878281 -86638756 - B4 SINE B4 -134 158 66 5 1064 26 30 0 0 chr6 62878907 62878940 -86638097 + AT_rich Low_complexity Low_complexity 1 33 0 5 1064 26 0 0 0 chr6 62879062 62879088 -86637949 + AT_rich Low_complexity Low_complexity 1 26 0 5 1064 1743 231 81 10 chr6 62881551 62882081 -86634956 - Lx2B LINE L1 0 7058 6390 5 1064 1083 248 72 0 chr6 62882096 62882346 -86634691 + RMER1B Other Other 465 732 -334 5 1064 410 197 41 112 chr6 62882331 62882573 -86634464 + RMER1B Other Other 837 1061 -5 5 1064 750 200 0 0 chr6 62882615 62882755 -86634282 - URR1B DNA MER1_type 0 225 86 5 1064 1217 206 192 1 chr6 62882748 62883073 -86633964 + MTC LTR MaLR 39 421 0 5 1064 246 254 75 0 chr6 62883196 62883263 -86633774 - Lx8 LINE L1 -158 7315 7244 5 1064 466 366 39 17 chr6 62883729 62883907 -86633130 - B3A SINE B2 -16 182 1 5 1064 471 35 0 0 chr6 62884153 62884210 -86632827 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1064 297 0 0 0 chr6 62884210 62884242 -86632795 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1064 22 0 0 0 chr6 62884593 62884615 -86632422 + AT_rich Low_complexity Low_complexity 1 22 0 5 1064 1663 228 78 32 chr6 62884625 62885100 -86631937 - Lx5 LINE L1 -826 6224 5728 5 1064 2000 262 69 16 chr6 62885098 62885761 -86631276 + Lx5 LINE L1 6262 7045 -5 5 1064 204 216 26 39 chr6 62885893 62885970 -86631067 + A-rich Low_complexity Low_complexity 3 78 0 5 1064 817 306 40 18 chr6 62885975 62886251 -86630786 + Lx7 LINE L1 6953 7234 -462 5 1064 5044 84 3 206 chr6 62886282 62886859 -86630178 + L1MD1 LINE L1 5011 5586 -297 5 1064 7105 65 53 4 chr6 62886859 62887806 -86629231 + L1Md_F2 LINE L1 5588 6580 -2 5 1064 5044 114 5 181 chr6 62887806 62888411 -86628626 + L1MD1 LINE L1 5512 5989 -314 5 1064 25 31 0 0 chr6 62888561 62888593 -86628444 + AT_rich Low_complexity Low_complexity 1 32 0 5 1064 268 134 41 10 chr6 62890138 62890236 -86626801 + T-rich Low_complexity Low_complexity 1 101 0 5 1064 570 311 15 0 chr6 62890236 62890442 -86626595 - Lx7 LINE L1 -1866 5830 5622 5 1064 501 303 50 12 chr6 62890499 62890740 -86626297 + L1M2 LINE L1 4991 5240 -903 5 1064 974 331 32 35 chr6 62890754 62891452 -86625585 + Lx8 LINE L1 5358 6062 -1634 5 1064 244 163 23 0 chr6 62891812 62891855 -86625182 + Lx8 LINE L1 6343 6386 -1087 5 1064 1743 173 90 9 chr6 62891855 62892199 -86624838 + RLTR30 LTR ERV1 1 372 -7 5 1064 2499 310 87 20 chr6 62892200 62893216 -86623821 + Lx8 LINE L1 6383 7466 -7 5 1064 7856 131 39 29 chr6 62893222 62894544 -86622493 - Lx2A1 LINE L1 -1 7007 5672 5 1064 259 372 45 7 chr6 62896860 62897014 -86620023 - MIR3 SINE MIR -10 198 39 5 1064 355 368 51 67 chr6 62897331 62897721 -86619316 + MER63D DNA AcHobo 3 386 -675 5 1064 222 37 0 0 chr6 62897733 62897760 -86619277 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1064 303 312 19 10 chr6 62897930 62898064 -86618973 + ERVL-B4-int LTR ERVL 4387 4565 -1149 5 1064 781 97 64 50 chr6 62898226 62898367 -86618670 + L1Md_F2 LINE L1 6430 6572 -10 5 1064 733 329 51 21 chr6 62898498 62898932 -86618105 + ERVL-B4-int LTR ERVL 4591 5037 -677 5 1064 2014 133 178 10 chr6 62899043 62899430 -86617607 + Lx3C LINE L1 6525 6976 0 5 1064 23 68 0 0 chr6 62899929 62899973 -86617064 + AT_rich Low_complexity Low_complexity 1 44 0 5 1064 1061 270 10 13 chr6 62899977 62900277 -86616760 + Lx7 LINE L1 7065 7363 -333 5 1064 23 0 0 0 chr6 62900280 62900303 -86616734 + AT_rich Low_complexity Low_complexity 1 23 0 5 1064 4539 40 0 2 chr6 62900446 62900994 -86616043 + L1Md_A LINE L1 6036 6582 0 5 1064 298 372 46 25 chr6 62901093 62901289 -86615748 - Lx8 LINE L1 -283 7190 6991 5 1064 282 353 59 0 chr6 62901358 62901477 -86615560 - Lx8 LINE L1 -665 6808 6683 5 1064 647 260 12 17 chr6 62901481 62901653 -86615384 - Lx7 LINE L1 -461 7235 7065 5 1064 23 68 0 0 chr6 62901657 62901701 -86615336 + AT_rich Low_complexity Low_complexity 1 44 0 5 1064 763 327 67 18 chr6 62901824 62902151 -86614886 - Lx8 LINE L1 -861 6612 6270 5 1064 1079 282 81 31 chr6 62902432 62902617 -86614420 - Lx8 LINE L1 -1554 5919 5679 5 1064 2955 86 0 25 chr6 62902617 62903023 -86614014 + MTA_Mm LTR MaLR 1 396 0 5 1064 1079 278 78 30 chr6 62903023 62903338 -86613699 - Lx8 LINE L1 -169 5678 5366 5 1064 293 185 0 97 chr6 62903389 62903461 -86613576 + ORR1C2 LTR MaLR 319 383 -1 5 1064 585 28 0 0 chr6 62903503 62903574 -86613463 + (GA)n Simple_repeat Simple_repeat 2 72 0 5 1064 1087 111 18 0 chr6 62903767 62903938 -86613099 - L1_Mus2 LINE L1 0 6566 6393 5 1064 245 173 39 0 chr6 62903941 62903993 -86613044 + L1M2 LINE L1 4900 4953 -1190 5 1064 406 332 21 28 chr6 62904006 62904299 -86612738 + L1_Mur3 LINE L1 5008 5329 -551 5 1064 407 91 0 0 chr6 62904301 62904367 -86612670 + L1_Mus2 LINE L1 6462 6527 -39 5 1064 1261 200 0 0 chr6 62904521 62904746 -86612291 - URR1B DNA MER1_type 0 225 1 5 1064 217 229 105 35 chr6 62904855 62904941 -86612096 + MIRb SINE MIR 113 204 -64 5 1064 244 284 40 0 chr6 62906537 62906611 -86610426 + MTEa LTR MaLR 297 373 -6 5 1064 1118 272 127 77 chr6 62906613 62907118 -86609919 - MT2A LTR ERVL -3 530 1 5 1064 809 322 118 3 chr6 62907152 62907526 -86609511 + MTE-int LTR MaLR 17 433 -1147 5 1064 303 85 0 0 chr6 62907709 62907756 -86609281 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1064 450 331 16 0 chr6 62908021 62908148 -86608889 + RSINE1 SINE B4 1 129 -36 5 1064 837 71 0 0 chr6 62908228 62908341 -86608696 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 5 1064 383 277 72 77 chr6 62908443 62908689 -86608348 + L1MA4 LINE L1 5327 5571 -729 5 1064 407 322 32 23 chr6 62908704 62908923 -86608114 + L1MA4 LINE L1 5787 6007 -293 5 1064 940 199 11 0 chr6 62908925 62909111 -86607926 - RMER6-int LTR ERVK -2212 965 778 5 1064 6269 167 141 17 chr6 62909121 62910737 -86606300 - Lx4A LINE L1 -3 7055 5310 5 1064 4735 123 13 13 chr6 62910737 62911481 -86605556 + Lx2 LINE L1 6243 6986 -11 5 1064 213 39 0 0 chr6 62911484 62911510 -86605527 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 1064 4967 146 199 21 chr6 62911510 62912050 -86604987 - Lx4A LINE L1 -568 5309 4572 5 1064 956 195 0 5 chr6 62912050 62912251 -86604786 - L1_Mur1 LINE L1 -1092 4794 4595 5 16 36997 49 3 3 chr6 62912248 62918509 -86598528 - L1Md_T LINE L1 -1 6584 233 5 1065 434 132 0 0 chr6 62918508 62918576 -86598461 - L1_Mm LINE L1 -1275 4608 4541 5 1065 2364 88 23 0 chr6 62918592 62918979 -86598058 - MusHAL1 LINE L1 -427 2285 1890 5 1065 6156 148 29 6 chr6 62918978 62920774 -86596263 + Lx LINE L1 4793 6629 -25 5 1065 375 23 0 0 chr6 62920780 62920824 -86596213 + (GAAA)n Simple_repeat Simple_repeat 3 46 0 5 1065 2181 129 3 0 chr6 62920824 62921174 -86595863 + L1_Mur2 LINE L1 2375 2725 -3152 5 1065 456 162 9 19 chr6 62921174 62921281 -86595756 - RMER6-int LTR ERVK -2377 800 695 5 1065 3815 52 4 6 chr6 62921393 62921880 -86595157 + L1Md_F2 LINE L1 6097 6582 0 5 1065 492 93 0 0 chr6 62922246 62922321 -86594716 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 5 1065 181 333 57 38 chr6 62922466 62922572 -86594465 + L2c LINE L2 3210 3317 -70 5 1065 1067 130 0 0 chr6 62922650 62922819 -86594218 - RMER6-int LTR ERVK -2522 655 487 5 1065 216 0 0 0 chr6 62923704 62923728 -86593309 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 5 1065 611 311 20 25 chr6 62923731 62923935 -86593102 - Lx5 LINE L1 -15 7035 6833 5 1065 2631 266 65 22 chr6 62923935 62924784 -86592253 - RLTR18-int LTR ERVK -2387 2974 2090 5 1065 417 39 0 0 chr6 62925025 62925076 -86591961 + (CAG)n Simple_repeat Simple_repeat 2 52 0 5 1065 804 21 0 0 chr6 62925076 62925170 -86591867 + (GAA)n Simple_repeat Simple_repeat 3 96 0 5 1065 207 146 0 0 chr6 62925216 62925257 -86591780 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1065 278 326 54 0 chr6 62925261 62925445 -86591592 + L1_Rod LINE L1 1448 1641 -4206 5 1065 299 139 0 0 chr6 62925455 62925498 -86591539 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1065 971 161 0 6 chr6 62925498 62925679 -86591358 + GA-rich Low_complexity Low_complexity 1 180 0 5 1065 1158 297 125 33 chr6 62925680 62926537 -86590500 + L1_Rod LINE L1 1647 2582 -3265 5 1065 3617 68 4 8 chr6 62926543 62927029 -86590008 - L1_Mus3 LINE L1 -436 6202 5719 5 1065 3104 102 7 2 chr6 62927027 62927460 -86589577 + L1_Mus3 LINE L1 6147 6581 -57 5 1065 3110 294 71 47 chr6 62927464 62929615 -86587422 + L1_Rod LINE L1 2807 5008 -839 5 1065 900 138 19 0 chr6 62929651 62929847 -86587190 - L1_Mus3 LINE L1 0 6638 6461 5 1065 2244 194 16 16 chr6 62929849 62930346 -86586691 - L1Md_F LINE L1 -5500 1019 87 5 1065 270 300 22 0 chr6 62930378 62930468 -86586569 + L1_Rod LINE L1 5096 5187 -660 5 1065 1237 276 143 50 chr6 62930469 62931209 -86585828 + RLTR40 LTR ERVK 1 809 -8 6 1065 640 156 8 8 chr6 62931322 62931451 -86585586 + GA-rich Low_complexity Low_complexity 3 131 0 6 1065 560 293 27 0 chr6 62931454 62931642 -86585395 + L1_Rod LINE L1 5297 5489 -358 5 1065 1842 268 133 26 chr6 62931708 62932658 -86584379 - L1_Rod LINE L1 -3432 2415 1365 6 1065 726 144 177 94 chr6 62932662 62932854 -86584183 - RMER16 LTR ERVK -83 450 243 6 1065 1026 256 72 15 chr6 62932855 62933255 -86583782 - L1_Rod LINE L1 -6252 1356 934 6 1065 842 126 12 19 chr6 62933432 62933594 -86583443 + L1_Mus3 LINE L1 6478 6638 0 6 1065 21 36 0 0 chr6 62933775 62933803 -86583234 + AT_rich Low_complexity Low_complexity 1 28 0 6 1065 698 332 21 0 chr6 62934418 62934704 -86582333 + L1_Rod LINE L1 2152 2443 -3404 6 1065 1235 341 63 37 chr6 62934914 62935781 -86581256 + Lx8 LINE L1 6109 6998 -475 6 1065 25 0 0 0 chr6 62935877 62935902 -86581135 + AT_rich Low_complexity Low_complexity 1 25 0 6 1065 928 217 33 0 chr6 62936764 62936976 -86580061 + URR1A DNA MER1_type 5 223 -3 6 1065 244 330 34 0 chr6 62937013 62937101 -86579936 + PB1D10 SINE Alu 18 108 -9 6 1065 25 0 0 0 chr6 62937226 62937251 -86579786 + AT_rich Low_complexity Low_complexity 1 25 0 6 1065 22 80 0 0 chr6 62938063 62938113 -86578924 + AT_rich Low_complexity Low_complexity 1 50 0 6 1065 231 36 0 0 chr6 62938190 62938218 -86578819 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1065 4137 154 10 1 chr6 62938222 62938892 -86578145 + RLTR21 LTR ERVK 1 676 -896 6 1065 37834 31 0 0 chr6 62938892 62945304 -86571733 - L1Md_T LINE L1 -6 6579 71 6 1065 2707 174 63 59 chr6 62945304 62945759 -86571278 + RLTR21 LTR ERVK 655 1132 -440 6 1065 826 227 135 75 chr6 62945759 62946106 -86570931 + RLTR9A LTR ERVK 1 368 0 6 1065 2707 174 63 59 chr6 62946106 62946299 -86570738 + RLTR21 LTR ERVK 1133 1306 -266 6 1065 2329 157 76 72 chr6 62946306 62946522 -86570515 + RLTR21 LTR ERVK 1056 1306 -266 6 1065 389 70 18 0 chr6 62946522 62946579 -86570458 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1065 2329 157 76 72 chr6 62946579 62946877 -86570160 + RLTR21 LTR ERVK 1307 1572 0 6 1065 2127 55 26 62 chr6 62948375 62948684 -86568353 - L1_Mus2 LINE L1 0 6566 6269 6 1065 21 0 0 0 chr6 62949455 62949476 -86567561 + AT_rich Low_complexity Low_complexity 1 21 0 6 1065 3085 64 7 26 chr6 62949750 62950165 -86566872 - L1_Mus1 LINE L1 0 6567 6161 6 1065 212 100 25 0 chr6 62950191 62950231 -86566806 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 6 1065 24 0 0 0 chr6 62950562 62950586 -86566451 + AT_rich Low_complexity Low_complexity 1 24 0 6 1065 4896 123 43 21 chr6 62950591 62951024 -86566013 - Lx3A LINE L1 -6 6975 6534 6 1065 471 23 33 43 chr6 62951024 62951116 -86565921 + (TTTG)n Simple_repeat Simple_repeat 2 92 0 6 1065 4896 123 43 21 chr6 62951116 62951494 -86565543 - Lx3A LINE L1 -448 6533 6146 6 1065 768 115 0 0 chr6 62951494 62951610 -86565427 + L1_Mur1 LINE L1 4702 4817 -1069 6 1065 26 0 0 0 chr6 62951610 62951636 -86565401 + AT_rich Low_complexity Low_complexity 1 26 0 6 1065 21 36 0 0 chr6 62951736 62951764 -86565273 + AT_rich Low_complexity Low_complexity 1 28 0 6 1065 338 273 108 30 chr6 62952925 62953091 -86563946 - MTEa LTR MaLR 0 379 201 6 1065 474 296 117 9 chr6 62953247 62953584 -86563453 - L1M5 LINE L1 -526 5714 5344 6 1065 23 33 0 0 chr6 62953636 62953666 -86563371 + AT_rich Low_complexity Low_complexity 1 30 0 6 1065 967 345 31 20 chr6 62954035 62954445 -86562592 - Lx8 LINE L1 -356 7117 6703 6 1065 833 122 13 13 chr6 62954445 62954594 -86562443 - L1Md_F3 LINE L1 -2 6582 6434 6 1065 967 345 31 20 chr6 62954594 62954694 -86562343 - Lx8 LINE L1 -771 6702 6602 6 1065 997 254 32 18 chr6 62954764 62955045 -86561992 - Lx8 LINE L1 -982 6491 6207 6 1065 35948 43 2 4 chr6 62955052 62961259 -86555778 - L1Md_T LINE L1 -3 6582 295 6 1065 527 315 27 5 chr6 62961608 62961828 -86555209 + Lx7 LINE L1 5597 5821 -1875 6 1065 912 229 32 65 chr6 62962426 62962767 -86554270 + Lx7 LINE L1 7367 7696 0 6 1065 211 326 80 20 chr6 62963553 62963653 -86553384 - L4 LINE RTE -594 1435 1330 6 1065 840 277 71 34 chr6 62963961 62964011 -86553026 + MTD LTR MaLR 159 208 -211 6 1065 582 115 26 0 chr6 62964011 62964124 -86552913 + L1_Mus3 LINE L1 6523 6638 0 6 1065 840 277 71 34 chr6 62964124 62964312 -86552725 + MTD LTR MaLR 209 406 -13 6 1065 2132 263 34 20 chr6 62964323 62964943 -86552094 + MTD-int LTR MaLR 1 1100 -692 6 1065 33763 36 2 0 chr6 62964970 62971885 -86545152 + L1Md_T LINE L1 1 5589 -297 6 1065 8990 8 0 0 chr6 62971885 62972913 -86544124 + L1Md_T LINE L1 5590 6585 0 6 1065 1088 303 85 29 chr6 62972917 62973399 -86543638 + MTD-int LTR MaLR 632 1140 -118 6 1065 551 59 0 23 chr6 62973403 62973490 -86543547 - L1Md_F2 LINE L1 -10 6572 6488 6 1065 642 113 0 0 chr6 62973490 62973587 -86543450 - L1Md_F LINE L1 -6332 187 91 6 1065 436 250 37 0 chr6 62973589 62973697 -86543340 + MTD-int LTR MaLR 1147 1258 0 6 1065 1192 257 62 10 chr6 62973711 62974017 -86543020 + MTD LTR MaLR 14 335 -84 6 1065 207 0 0 0 chr6 62974228 62974251 -86542786 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1065 201 121 0 0 chr6 62974453 62974486 -86542551 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 6 1065 8579 3 0 0 chr6 62974507 62975717 -86541320 - L1Md_A LINE L1 -1 6581 5372 6 1065 549 0 0 0 chr6 62975716 62975784 -86541253 + L1Md_A LINE L1 5210 5277 -606 6 1065 6071 156 32 22 chr6 62975800 62976941 -86540096 - Lx3B LINE L1 0 6973 5822 6 1065 1857 100 10 6 chr6 62976941 62977253 -86539784 + L1_Mur1 LINE L1 3607 3919 -1967 6 1065 21 57 0 0 chr6 62977624 62977659 -86539378 + AT_rich Low_complexity Low_complexity 1 35 0 6 1065 832 270 172 72 chr6 62977898 62978229 -86538808 + ORR1E LTR MaLR 1 364 -10 6 1065 303 324 96 16 chr6 62978638 62978826 -86538211 - LTR40b LTR ERVL -12 507 305 6 1065 316 374 44 11 chr6 62978926 62979107 -86537930 - LTR40b LTR ERVL -269 193 7 6 1065 468 0 0 0 chr6 62979437 62979489 -86537548 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1065 237 308 11 0 chr6 62979627 62979718 -86537319 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 1065 3624 256 99 30 chr6 62979802 62979906 -86537131 - Lx9 LINE L1 -8 7636 7531 6 1065 369 0 0 0 chr6 62979906 62979947 -86537090 + (TTA)n Simple_repeat Simple_repeat 2 42 0 6 1065 1047 116 0 0 chr6 62979947 62980093 -86536944 - B1_Mus1 SINE Alu -2 146 1 6 1065 3624 256 99 30 chr6 62980093 62980135 -86536902 - Lx9 LINE L1 -114 7530 7480 6 1065 285 29 0 0 chr6 62980135 62980169 -86536868 + (TATG)n Simple_repeat Simple_repeat 2 35 0 6 1065 3624 259 76 23 chr6 62980169 62982092 -86534945 - Lx9 LINE L1 -165 7479 5300 6 1065 6661 105 7 42 chr6 62982095 62982330 -86534707 + Lx LINE L1 5587 5793 -861 6 1065 867 150 68 17 chr6 62982330 62982506 -86534531 - B2_Mm1t SINE B2 -8 185 1 6 1065 6661 105 7 42 chr6 62982506 62983372 -86533665 + Lx LINE L1 5794 6650 -4 6 1065 473 319 69 98 chr6 62983890 62984238 -86532799 - MLT1B LTR MaLR -30 360 23 6 1065 1516 308 38 7 chr6 62984622 62985171 -86531866 - Lx6 LINE L1 -1007 6453 5888 6 1065 1854 277 127 13 chr6 62985172 62985846 -86531191 + Lx6 LINE L1 6702 7452 -8 6 1065 1192 307 55 25 chr6 62985882 62986487 -86530550 - Lx7 LINE L1 -333 7363 6741 6 1065 301 355 19 9 chr6 62986518 62986626 -86530411 - PB1D10 SINE Alu -8 109 1 6 1065 263 244 142 39 chr6 62987067 62987272 -86529765 - L1MEf LINE L1 -3614 3231 3006 6 1065 238 322 133 0 chr6 62987275 62987365 -86529672 - ID_B1 SINE B4 -28 196 95 6 1065 258 320 79 24 chr6 62987910 62988126 -86528911 - L1MEf LINE L1 -4246 2603 2216 6 1065 697 344 42 26 chr6 62988488 62988873 -86528164 - Lx8 LINE L1 -303 7170 6780 6 1065 393 109 16 0 chr6 62988869 62988933 -86528104 - L1_Mus2 LINE L1 -188 6378 6314 6 1065 1479 62 0 0 chr6 62988933 62989127 -86527910 + L1_Mus2 LINE L1 6372 6565 -1 6 1065 277 143 254 0 chr6 62989209 62989272 -86527765 - BC1_Mm scRNA scRNA -72 80 2 6 1065 417 339 138 4 chr6 62989376 62989607 -86527430 - Lx8 LINE L1 -886 6587 6326 6 1065 8014 34 4 1 chr6 62989629 62990980 -86526057 - L1Md_F3 LINE L1 0 6584 5230 6 1065 701 93 0 0 chr6 62991441 62991548 -86525489 - L1_Mus1 LINE L1 -1 6566 6460 6 1065 1015 50 0 7 chr6 62991548 62991688 -86525349 - L1_Mus1 LINE L1 -503 6064 5926 6 1065 627 284 44 13 chr6 62991700 62991988 -86525049 - Lx8 LINE L1 -1880 5816 5497 6 1065 697 281 49 10 chr6 62991995 62992301 -86524736 + L1_Mur3 LINE L1 4177 4494 -1386 6 1065 468 0 0 0 chr6 62992341 62992393 -86524644 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1065 295 268 0 0 chr6 62992745 62992801 -86524236 + B1F2 SINE Alu 2 57 -92 6 1065 1142 301 91 19 chr6 62993277 62993930 -86523107 - Lx7 LINE L1 -410 7286 6566 6 1065 279 237 0 0 chr6 62993934 62993993 -86523044 + L1_Mur3 LINE L1 4518 4576 -1301 6 1065 467 243 83 35 chr6 62993994 62994139 -86522898 + Lx7 LINE L1 6398 6549 -1147 6 1065 180 0 0 0 chr6 62994411 62994431 -86522606 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1065 25 51 0 0 chr6 62994772 62994811 -86522226 + AT_rich Low_complexity Low_complexity 1 39 0 6 1065 260 65 0 42 chr6 62995494 62995542 -86521495 + (TTTTTG)n Simple_repeat Simple_repeat 1 46 0 6 1065 198 0 0 0 chr6 62995694 62995716 -86521321 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6 1065 25 0 0 0 chr6 62995789 62995814 -86521223 + AT_rich Low_complexity Low_complexity 1 25 0 6 1065 1148 225 0 25 chr6 62996740 62996982 -86520055 - RLTR21 LTR ERVK 0 1572 1337 6 1065 1598 234 80 57 chr6 62997022 62997654 -86519383 - RMER13B LTR ERVK -9 899 321 6 1065 32 57 0 0 chr6 62998099 62998152 -86518885 + AT_rich Low_complexity Low_complexity 1 53 0 6 1065 25 0 0 0 chr6 62998200 62998225 -86518812 + AT_rich Low_complexity Low_complexity 1 25 0 6 1065 21 0 0 0 chr6 62998252 62998273 -86518764 + AT_rich Low_complexity Low_complexity 1 21 0 6 1065 312 237 30 20 chr6 62998556 62998655 -86518382 + L1MC LINE L1 4486 4585 -1561 6 1065 326 322 149 6 chr6 62998710 62998953 -86518084 + L1MC LINE L1 4612 4893 -1253 6 1065 246 307 53 0 chr6 62999052 62999127 -86517910 + PB1D10 SINE Alu 25 103 -14 6 1065 967 170 11 32 chr6 62999786 62999974 -86517063 + RLTR18 LTR ERVK 1 184 -432 6 1065 1648 210 84 26 chr6 63000001 63000383 -86516654 + RLTR18 LTR ERVK 183 586 -30 1 1065 25 83 0 0 chr6 63000401 63000461 -86516576 + AT_rich Low_complexity Low_complexity 1 60 0 2 1065 1564 57 0 0 chr6 63001242 63001434 -86515603 + B2_Mm1t SINE B2 2 193 0 3 1065 246 211 28 28 chr6 63001591 63001698 -86515339 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 4 1065 393 336 26 96 chr6 63001797 63002110 -86514927 + B4A SINE B4 2 292 0 5 1065 1183 222 88 20 chr6 63002347 63002641 -86514396 + MT2A LTR ERVL 13 326 -207 6 1065 2527 215 151 29 chr6 63002745 63003368 -86513669 - RMER1B Other Other -11 1055 357 7 1065 268 348 88 34 chr6 63003498 63003906 -86513131 - L1MD3 LINE L1 -127 7868 7439 8 1065 227 312 108 54 chr6 63004042 63004320 -86512717 - L1MD3 LINE L1 -818 7177 6885 8 1065 235 139 28 56 chr6 63004365 63004472 -86512565 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 9 1065 3959 103 31 24 chr6 63004516 63005134 -86511903 - Lx2 LINE L1 0 6997 6376 1 1065 35283 75 7 11 chr6 63005193 63011410 -86505627 - L1Md_F2 LINE L1 0 6582 388 1 1065 381 290 96 48 chr6 63012025 63012318 -86504719 - L1ME2 LINE L1 -222 5942 5636 1 1065 1724 207 24 63 chr6 63012536 63012918 -86504119 - ORR1B2 LTR MaLR 0 367 1 1 1065 23 54 0 0 chr6 63012947 63012984 -86504053 + AT_rich Low_complexity Low_complexity 1 37 0 1 1065 1297 139 9 14 chr6 63013101 63013319 -86503718 - RMER2 LTR ERV1 -347 220 4 1 1065 207 100 0 0 chr6 63013320 63013350 -86503687 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 1 1065 809 136 173 6 chr6 63013352 63013508 -86503529 + RLTR9D LTR ERVK 1 182 -221 1 1065 345 85 0 0 chr6 63013659 63013706 -86503331 + ETnERV2-int LTR ERVK 7331 7377 -29 1 1065 7171 40 2 1 chr6 63013708 63014576 -86502461 - L1Md_F3 LINE L1 -3 6581 5713 1 1065 2015 158 65 8 chr6 63014599 63014968 -86502069 + RLTR9D LTR ERVK 2 391 -12 2 1065 222 238 0 0 chr6 63014971 63015013 -86502024 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 2 1065 915 183 0 0 chr6 63015039 63015219 -86501818 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1065 272 231 0 0 chr6 63015423 63015488 -86501549 + RLTR14 LTR ERV1 114 178 -204 2 1065 4224 46 0 0 chr6 63015488 63016027 -86501010 + MTA_Mm-int LTR MaLR 560 1098 0 2 1065 3312 35 5 0 chr6 63016027 63016421 -86500616 + MTA_Mm LTR MaLR 1 396 0 2 1065 416 206 124 0 chr6 63016424 63016521 -86500516 + RLTR14 LTR ERV1 198 306 -76 2 1065 232 358 0 47 chr6 63017448 63017533 -86499504 - ID4 SINE ID 0 83 3 2 1065 1073 115 0 0 chr6 63018597 63018745 -86498292 - B1_Mus1 SINE Alu 0 148 1 2 1065 1422 49 22 11 chr6 63019623 63019807 -86497230 - B2_Mm1a SINE B2 -6 187 2 2 1065 21 71 0 0 chr6 63019971 63020013 -86497024 + AT_rich Low_complexity Low_complexity 1 42 0 2 1065 393 296 43 29 chr6 63020394 63020669 -86496368 - L1MA5 LINE L1 -469 5831 5596 2 1065 985 217 24 14 chr6 63020894 63021104 -86495933 - B3 SINE B2 -1 215 4 3 1065 321 272 102 25 chr6 63021135 63021485 -86495552 - L1MA5 LINE L1 -860 5440 5060 2 1065 2607 45 4 125 chr6 63021714 63022141 -86494896 - RLTR10B2 LTR ERVK -1 356 1 3 1065 334 262 68 25 chr6 63022144 63022277 -86494760 - L1MA5 LINE L1 -1621 4522 4390 2 1065 669 25 0 0 chr6 63022296 63022375 -86494662 + (TTTC)n Simple_repeat Simple_repeat 1 79 0 3 1065 1308 233 133 22 chr6 63022741 63023109 -86493928 + MTD LTR MaLR 11 419 0 3 1065 281 290 125 38 chr6 63023119 63023359 -86493678 - L1MA5 LINE L1 -2367 3776 3516 2 1065 227 286 0 0 chr6 63023506 63023569 -86493468 - Lx7 LINE L1 -397 7299 7237 3 1065 1978 287 65 96 chr6 63023631 63025415 -86491622 - L1_Mur3 LINE L1 -3226 2654 923 3 1065 814 322 26 55 chr6 63025737 63026157 -86490880 - Lx9 LINE L1 -339 7305 6898 3 1065 265 30 0 0 chr6 63026157 63026190 -86490847 - L1Md_F2 LINE L1 -1953 3930 3898 3 1065 12746 55 13 1 chr6 63026185 63027825 -86489212 + L1Md_F2 LINE L1 3927 5586 -297 3 1065 7629 65 7 3 chr6 63027825 63028815 -86488222 + L1Md_F2 LINE L1 5587 6580 -2 3 1065 390 297 18 9 chr6 63028915 63029027 -86488010 - Lx9 LINE L1 -1175 6469 6357 3 1065 246 265 16 89 chr6 63029065 63029189 -86487848 - Lx9 LINE L1 -1374 6270 6156 3 1065 1204 146 10 0 chr6 63029308 63029513 -86487524 - Lx2 LINE L1 -14 6983 6777 3 1065 3367 178 15 29 chr6 63029514 63030294 -86486743 - Lx2 LINE L1 -29 7444 6088 3 1065 1135 211 28 126 chr6 63030564 63030890 -86486147 - RMER19C LTR ERVK -3 608 315 3 1065 574 211 58 142 chr6 63030884 63031110 -86485927 - RMER19C LTR ERVK -404 207 1 3 1065 11867 87 11 6 chr6 63031170 63033468 -86483569 - L1Md_F2 LINE L1 -17 6565 4250 4 1065 237 185 0 0 chr6 63033662 63033727 -86483310 + CT-rich Low_complexity Low_complexity 2 66 0 4 1065 211 309 10 21 chr6 63033779 63033875 -86483162 + (CATATA)n Simple_repeat Simple_repeat 6 100 0 4 1065 921 307 48 48 chr6 63035763 63035930 -86481107 - Lx2 LINE L1 -376 7097 6927 3 1065 935 159 156 21 chr6 63035930 63036122 -86480915 + URR1A DNA MER1_type 5 222 -4 4 1065 921 307 48 48 chr6 63036122 63036375 -86480662 - Lx2 LINE L1 -547 6926 6677 3 1065 217 119 0 45 chr6 63036385 63036429 -86480608 + T-rich Low_complexity Low_complexity 5 46 0 4 1065 259 217 0 0 chr6 63036429 63036475 -86480562 - Lx2 LINE L1 -809 6664 6619 3 1065 335 83 0 16 chr6 63036522 63036583 -86480454 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 4 1065 988 126 53 42 chr6 63036650 63036840 -86480197 - B2_Mm2 SINE B2 -3 192 1 4 1065 586 183 7 47 chr6 63037055 63037204 -86479833 - Lx2 LINE L1 -5 6649 6507 3 1065 477 326 90 13 chr6 63039193 63039426 -86477611 - Lx8 LINE L1 -151 7322 7072 4 1065 294 283 10 98 chr6 63039455 63039557 -86477480 - ID_B1 SINE B4 -8 216 124 4 1065 441 313 82 47 chr6 63039566 63040566 -86476471 - L1M2 LINE L1 -707 5596 4569 4 1065 186 375 0 0 chr6 63041720 63041768 -86475269 - MIRm SINE MIR -15 261 214 5 1065 375 336 62 47 chr6 63041949 63042305 -86474732 + MTEb LTR MaLR 5 376 -3 5 1065 2417 134 23 5 chr6 63044223 63044612 -86472425 - Lx2 LINE L1 -383 6614 6219 5 1065 1219 186 0 87 chr6 63044607 63044883 -86472154 - Lx2 LINE L1 -914 6083 5832 5 1065 1613 324 42 15 chr6 63044916 63045564 -86471473 + Lx7 LINE L1 6251 6915 -781 5 133 7995 134 30 15 chr6 63045560 63046870 -86470167 + Lx2A1 LINE L1 5671 7000 -8 5 1066 187 95 47 23 chr6 63047323 63047366 -86469671 + T-rich Low_complexity Low_complexity 2 45 0 5 1066 27 62 0 0 chr6 63047941 63047989 -86469048 + AT_rich Low_complexity Low_complexity 1 48 0 5 1066 968 36 29 7 chr6 63048750 63048890 -86468147 - L1Md_F3 LINE L1 -1 6583 6441 5 1066 1500 151 108 10 chr6 63049327 63049641 -86467396 + L1_Mus4 LINE L1 6274 6618 -18 5 1066 658 121 8 8 chr6 63049644 63049761 -86467276 + (GA)n Simple_repeat Simple_repeat 1 117 0 5 1066 314 238 0 0 chr6 63049763 63049826 -86467211 + MTC LTR MaLR 197 259 -162 6 1066 617 123 9 0 chr6 63050333 63050439 -86466598 + (TC)n Simple_repeat Simple_repeat 2 108 0 6 1066 312 48 0 0 chr6 63050842 63050884 -86466153 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 6 1066 1633 140 11 0 chr6 63051521 63051792 -86465245 + Lx2 LINE L1 6716 6989 -8 6 1066 216 196 0 0 chr6 63053044 63053090 -86463947 + T-rich Low_complexity Low_complexity 1 46 0 6 1066 2493 210 21 29 chr6 63053183 63053847 -86463190 - RLTR31_Mm LTR ERVK 0 561 1 6 1066 468 0 0 0 chr6 63053868 63053920 -86463117 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1066 1754 231 101 73 chr6 63054486 63055157 -86461880 + RMER6C LTR ERVK 1 690 0 6 1066 8467 108 17 6 chr6 63055271 63057019 -86460018 - L1_Mus3 LINE L1 -7 6631 4863 6 1066 1071 103 0 0 chr6 63057019 63057165 -86459872 + B1_Mus2 SINE Alu 1 146 -1 6 1066 8467 128 10 12 chr6 63057165 63057502 -86459535 - L1_Mus3 LINE L1 -1021 4862 4538 6 1066 2354 36 4 0 chr6 63057498 63057776 -86459261 - L1Md_F3 LINE L1 -172 6412 6134 7 1066 474 99 22 11 chr6 63057887 63057979 -86459058 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 7 1066 234 136 0 0 chr6 63058252 63058296 -86458741 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 1066 475 43 0 28 chr6 63058345 63058417 -86458620 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1066 348 341 48 0 chr6 63060143 63060269 -86456768 - RSINE1 SINE B4 -22 143 12 7 1066 273 128 0 0 chr6 63060478 63060525 -86456512 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1066 464 302 8 0 chr6 63060661 63060787 -86456250 - Lx6 LINE L1 -426 7034 6908 7 1066 1792 164 16 3 chr6 63060787 63061092 -86455945 - RLTR27 LTR ERVK 0 309 1 7 1066 465 167 0 0 chr6 63061092 63061176 -86455861 - MMERVK10C-int LTR ERVK 0 7581 7498 7 1066 2235 88 3 3 chr6 63061177 63061495 -86455542 - RLTR10A LTR ERVK -93 318 1 7 1066 4806 105 23 10 chr6 63061495 63062234 -86454803 - RLTR10-int LTR ERVK -1 1986 1288 7 1066 1967 47 123 13 chr6 63062238 63062707 -86454330 - RLTR10-int LTR ERVK -1015 5527 5007 7 1066 753 222 9 59 chr6 63062707 63062927 -86454110 - RLTR10-int LTR ERVK -6039 503 295 7 1066 504 0 0 0 chr6 63062933 63062989 -86454048 + (GAA)n Simple_repeat Simple_repeat 2 57 0 7 1066 447 272 59 62 chr6 63063033 63063354 -86453683 - MMERVK10C-int LTR ERVK -6709 872 553 7 1066 324 130 0 0 chr6 63063579 63063625 -86453412 - MMERVK10C-int LTR ERVK -7314 267 222 7 1066 1720 161 16 35 chr6 63063661 63063976 -86453061 - RLTR27 LTR ERVK 0 309 1 8 1066 3224 259 89 31 chr6 63064028 63064588 -86452449 - Lx6 LINE L1 -746 6714 6092 7 1066 2707 103 29 7 chr6 63064588 63064999 -86452038 + BGLII_Mus LTR ERVK 1 420 -2 8 1066 3224 257 68 17 chr6 63064999 63065572 -86451465 - Lx6 LINE L1 -1369 6091 5514 7 1066 1807 202 3 0 chr6 63065978 63066335 -86450702 - Lx2B LINE L1 -370 5516 5159 8 1066 5533 209 43 12 chr6 63066344 63067719 -86449318 + Lx2B LINE L1 5493 6927 -73 8 1066 27 29 0 0 chr6 63067719 63067753 -86449284 + AT_rich Low_complexity Low_complexity 1 34 0 8 1066 26 30 0 0 chr6 63067963 63067996 -86449041 + AT_rich Low_complexity Low_complexity 1 33 0 8 1066 1332 215 21 140 chr6 63068004 63068536 -86448501 + L1_Rod LINE L1 3830 4311 -1575 8 1066 7836 12 0 1 chr6 63068853 63069748 -86447289 + L1_Mm LINE L1 4990 5883 0 8 1066 5043 168 62 11 chr6 63069787 63070801 -86446236 - Lx3C LINE L1 -2 6974 5909 8 1066 5742 143 21 45 chr6 63070805 63071873 -86445164 - L1_Mur1 LINE L1 -274 5612 4570 8 1066 21 36 0 0 chr6 63071929 63071957 -86445080 + AT_rich Low_complexity Low_complexity 1 28 0 8 1066 5498 156 203 45 chr6 63071964 63073420 -86443617 + L1_Mur1 LINE L1 2894 4578 -1308 9 1066 238 394 16 0 chr6 63073793 63073920 -86443117 + MTEa LTR MaLR 18 146 -233 9 1066 449 286 58 14 chr6 63073928 63074105 -86442932 + MT2A LTR ERVL 184 500 -101 9 1066 663 13 0 0 chr6 63074109 63074185 -86442852 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 9 1066 712 291 101 16 chr6 63074311 63074497 -86442540 - MTD LTR MaLR -145 274 75 9 1066 324 0 0 0 chr6 63074497 63074533 -86442504 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 9 1066 712 291 101 16 chr6 63074533 63074594 -86442443 - MTD LTR MaLR -345 74 6 9 1066 207 100 0 0 chr6 63075208 63075238 -86441799 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 9 1066 24 0 0 0 chr6 63075509 63075533 -86441504 + AT_rich Low_complexity Low_complexity 1 24 0 9 1066 284 352 0 39 chr6 63075798 63075928 -86441109 - ORR1E LTR MaLR -234 125 1 9 1066 316 322 72 39 chr6 63076107 63076440 -86440597 - L1MEg LINE L1 -429 5744 5401 9 1066 22 35 0 0 chr6 63076450 63076479 -86440558 + AT_rich Low_complexity Low_complexity 1 29 0 1 1066 204 40 0 0 chr6 63076493 63076518 -86440519 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1066 396 0 0 0 chr6 63076518 63076561 -86440476 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1066 1249 237 7 3 chr6 63076562 63076867 -86440170 - Lx7 LINE L1 -35 7661 7356 1 1066 1257 217 109 139 chr6 63076932 63077466 -86439571 - Lx7 LINE L1 -519 7177 6660 1 1066 411 270 68 31 chr6 63078080 63078271 -86438766 + MER33 DNA MER1_type 38 235 -89 1 1066 5327 114 85 2 chr6 63078568 63079401 -86437636 + RLTR13D6 LTR ERVK 1 902 0 1 1066 499 309 111 71 chr6 63079595 63080201 -86436836 - L1MEg LINE L1 -1779 4367 3738 9 1066 215 31 0 30 chr6 63080439 63080472 -86436565 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1066 2740 258 75 49 chr6 63080472 63080605 -86436432 - Lx6 LINE L1 -30 7430 7298 1 1066 225 108 0 0 chr6 63080605 63080642 -86436395 + (TAATG)n Simple_repeat Simple_repeat 4 40 0 1 1066 2740 258 75 49 chr6 63080642 63081388 -86435649 - Lx6 LINE L1 -163 7297 6528 1 1066 1073 260 37 10 chr6 63081383 63081678 -86435359 - Lx7 LINE L1 -1291 6405 6103 1 1066 2261 201 96 12 chr6 63081676 63082423 -86434614 - Lx6 LINE L1 -988 6070 5236 1 1066 22 35 0 0 chr6 63082455 63082484 -86434553 + AT_rich Low_complexity Low_complexity 1 29 0 1 1066 230 350 0 0 chr6 63082567 63082664 -86434373 + T-rich Low_complexity Low_complexity 1 97 0 1 1066 261 262 0 15 chr6 63082595 63082661 -86434376 + CT-rich Low_complexity Low_complexity 2 66 0 1 1066 225 0 0 0 chr6 63082879 63082904 -86434133 + (CTTA)n Simple_repeat Simple_repeat 3 27 0 1 1066 3016 25 85 0 chr6 63083040 63083405 -86433632 - MTA_Mm LTR MaLR 0 396 1 1 1066 327 214 40 19 chr6 63083601 63083711 -86433326 - L1MEg LINE L1 -4562 1680 1549 9 1066 461 290 55 75 chr6 63084576 63084727 -86432310 + B3A SINE B2 2 150 -48 1 1066 375 73 0 0 chr6 63084727 63084782 -86432255 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1066 461 290 55 75 chr6 63084782 63084831 -86432206 + B3A SINE B2 151 198 0 1 1066 471 303 19 13 chr6 63085031 63085185 -86431852 + RLTR40 LTR ERVK 2 156 -661 1 1066 3420 177 27 27 chr6 63085191 63085572 -86431465 - Lx5 LINE L1 -762 6288 5910 1 1066 1598 136 18 73 chr6 63085572 63085913 -86431124 + RLTRETN_Mm LTR ERVK 1 322 0 1 1066 3420 151 30 24 chr6 63085913 63086541 -86430496 - Lx5 LINE L1 -1141 5909 5272 1 1066 3697 201 56 10 chr6 63086543 63087261 -86429776 + Lx5 LINE L1 6299 7049 -1 1 1066 1285 255 134 44 chr6 63087273 63087403 -86429634 + RLTR40 LTR ERVK 143 287 -530 1 1066 573 15 0 0 chr6 63087403 63087469 -86429568 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1066 1285 255 134 44 chr6 63087469 63087957 -86429080 + RLTR40 LTR ERVK 288 817 0 1 1066 291 53 52 35 chr6 63088089 63088147 -86428890 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 1 1066 1265 180 9 13 chr6 63088278 63088509 -86428528 + RLTR14 LTR ERV1 3 232 -150 1 1066 27 49 0 0 chr6 63088528 63088569 -86428468 + AT_rich Low_complexity Low_complexity 1 41 0 1 1066 540 208 0 0 chr6 63088582 63088678 -86428359 + RLTR14 LTR ERV1 239 334 -48 1 1066 2093 199 39 51 chr6 63089222 63089613 -86427424 - L1_Mur3 LINE L1 -2248 3632 3234 1 1066 1208 35 0 0 chr6 63089613 63089755 -86427282 - B1_Mus1 SINE Alu -6 142 1 1 1066 2093 199 39 51 chr6 63089755 63089875 -86427162 - L1_Mur3 LINE L1 -2647 3233 3130 1 1066 243 0 0 0 chr6 63089875 63089902 -86427135 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1066 2093 199 39 51 chr6 63089902 63090013 -86427024 - L1_Mur3 LINE L1 -2751 3129 3019 1 1066 2165 174 30 98 chr6 63090044 63090117 -86426920 + L1_Mur3 LINE L1 3634 3712 -2168 1 1066 252 0 0 0 chr6 63090117 63090145 -86426892 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1066 2165 174 30 98 chr6 63090145 63090631 -86426406 + L1_Mur3 LINE L1 3713 4155 -1725 1 1066 1893 255 28 17 chr6 63090629 63091088 -86425949 + Lx6 LINE L1 6811 7274 -186 1 1066 339 96 0 0 chr6 63091093 63091145 -86425892 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 1 1066 220 280 27 0 chr6 63091342 63091417 -86425620 + (CAGAGA)n Simple_repeat Simple_repeat 4 80 0 1 1066 21 0 0 0 chr6 63092523 63092544 -86424493 + AT_rich Low_complexity Low_complexity 1 21 0 1 1066 8289 151 19 12 chr6 63092996 63094284 -86422753 - Lx2B LINE L1 -23 6977 5693 1 1066 1958 108 20 3 chr6 63094284 63094623 -86422414 + L1_Mus3 LINE L1 6327 6638 0 1 1066 8289 185 30 7 chr6 63094623 63094920 -86422117 - Lx2B LINE L1 -191 5695 5386 1 1066 11092 182 77 28 chr6 63094931 63098498 -86418539 - Lx2B LINE L1 -1036 4841 796 1 1066 261 0 0 0 chr6 63099999 63100028 -86417009 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1066 23 78 0 0 chr6 63100132 63100183 -86416854 + AT_rich Low_complexity Low_complexity 1 51 0 1 1066 21 0 0 0 chr6 63100225 63100246 -86416791 + AT_rich Low_complexity Low_complexity 1 21 0 1 1066 749 220 53 232 chr6 63102588 63102796 -86414241 + ORR1D1 LTR MaLR 1 183 -191 1 1066 1557 17 0 0 chr6 63102796 63102976 -86414061 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1066 749 220 53 232 chr6 63102976 63103029 -86414008 + ORR1D1 LTR MaLR 184 184 -190 1 1066 525 58 0 0 chr6 63103029 63103098 -86413939 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1066 749 220 53 232 chr6 63103098 63103291 -86413746 + ORR1D1 LTR MaLR 184 374 0 1 1066 737 225 135 11 chr6 63103568 63103629 -86413408 - Lx9 LINE L1 -4 7640 7568 1 1066 1976 155 3 6 chr6 63103629 63103959 -86413078 - ORR1A4 LTR MaLR 0 329 1 1 1066 737 225 135 11 chr6 63103959 63104171 -86412866 - Lx9 LINE L1 -77 7567 7333 1 1066 21 0 0 0 chr6 63106278 63106299 -86410738 + AT_rich Low_complexity Low_complexity 1 21 0 1 1066 22 70 0 0 chr6 63107646 63107689 -86409348 + AT_rich Low_complexity Low_complexity 1 43 0 1 1066 2116 316 66 33 chr6 63107721 63108634 -86408403 - Lx8 LINE L1 -1 7472 6530 1 1066 1024 303 22 9 chr6 63108647 63108964 -86408073 - Lx6 LINE L1 -4 7456 7136 1 1066 432 55 0 0 chr6 63108967 63109022 -86408015 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1 1066 280 288 0 12 chr6 63109040 63109121 -86407916 - Lx6 LINE L1 -398 7062 6983 1 1066 1221 233 40 43 chr6 63109121 63109183 -86407854 + RLTR15 LTR ERVK 1 58 -301 1 1066 198 0 0 0 chr6 63109183 63109205 -86407832 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1066 1221 233 40 43 chr6 63109205 63109492 -86407545 + RLTR15 LTR ERVK 59 349 -10 1 1066 1047 109 0 0 chr6 63109724 63109880 -86407157 + (TCTCC)n Simple_repeat Simple_repeat 5 160 0 1 1066 212 189 0 0 chr6 63109880 63109917 -86407120 + T-rich Low_complexity Low_complexity 1 37 0 1 1066 207 0 0 0 chr6 63109930 63109953 -86407084 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1066 183 136 16 33 chr6 63110017 63110078 -86406959 + T-rich Low_complexity Low_complexity 2 61 0 1 1066 341 104 0 0 chr6 63110225 63110273 -86406764 + L1_Mur2 LINE L1 4375 4422 -1455 1 1066 1110 62 7 0 chr6 63111168 63111313 -86405724 + B1_Mus2 SINE Alu 1 146 -1 1 1066 286 324 42 54 chr6 63111737 63112073 -86404964 + MYSERV6-int LTR ERVK 62 393 -6157 1 1066 1114 300 80 16 chr6 63112044 63112559 -86404478 + MYSERV6-int LTR ERVK 813 1360 -1817 1 1066 1103 223 80 45 chr6 63112768 63113120 -86403917 + MYSERV6-int LTR ERVK 1273 1636 -7323 1 1066 313 197 0 0 chr6 63113144 63113205 -86403832 + MYSERV6-int LTR ERVK 4284 4344 -4615 1 1066 3400 222 106 106 chr6 63113209 63115166 -86401871 + MYSERV6-int LTR ERVK 7763 8662 -297 1 1066 461 217 28 28 chr6 63115146 63115288 -86401749 + MYSERV6-int LTR ERVK 6406 6547 -3 1 1066 997 264 21 32 chr6 63115296 63115636 -86401401 + RLTR15 LTR ERVK 4 339 -20 1 1066 2724 234 76 8 chr6 63115663 63116304 -86400733 - Lx6 LINE L1 -472 6988 6304 1 1066 214 385 45 50 chr6 63116431 63116633 -86400404 + ID_B1 SINE B4 24 224 0 1 1066 265 314 58 0 chr6 63117137 63117223 -86399814 + ID_B1 SINE B4 114 204 -20 1 1066 431 295 21 7 chr6 63118659 63118799 -86398238 + Lx6 LINE L1 7292 7433 -27 1 1066 1006 110 6 6 chr6 63118814 63118988 -86398049 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 1 1066 198 0 0 0 chr6 63119018 63119040 -86397997 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1066 850 112 104 0 chr6 63119048 63119182 -86397855 + B1_Mus1 SINE Alu 1 148 0 1 1066 212 0 36 0 chr6 63119186 63119214 -86397823 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1066 203 119 48 0 chr6 63119218 63119260 -86397777 + A-rich Low_complexity Low_complexity 2 45 0 1 1066 3550 247 66 38 chr6 63119347 63120401 -86396636 - Lx7 LINE L1 -15 7681 6598 1 1066 3130 124 18 8 chr6 63120422 63120910 -86396127 - Lx3A LINE L1 -5 6976 6484 1 1066 6323 103 5 43 chr6 63120910 63121441 -86395596 - L1_Mur1 LINE L1 -512 5374 4846 1 1066 495 0 0 0 chr6 63121441 63121496 -86395541 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1066 6323 103 5 43 chr6 63121496 63121995 -86395042 - L1_Mur1 LINE L1 -1041 4845 4383 1 1066 532 248 0 0 chr6 63121990 63122099 -86394938 - Lx7 LINE L1 -1114 6582 6474 1 1066 369 219 12 0 chr6 63122100 63122182 -86394855 - L1_Mur3 LINE L1 -698 5182 5100 1 1066 1321 239 31 41 chr6 63122252 63122666 -86394371 - L1_Mur3 LINE L1 -766 5114 4705 1 1066 387 0 0 0 chr6 63123136 63123179 -86393858 + (TTA)n Simple_repeat Simple_repeat 3 45 0 1 1066 434 301 0 0 chr6 63123182 63123318 -86393719 - B1F SINE Alu -10 139 4 1 1066 251 146 18 0 chr6 63123559 63123614 -86393423 + CT-rich Low_complexity Low_complexity 4 59 0 1 1066 254 368 28 15 chr6 63123619 63123768 -86393269 - B1F SINE Alu -1 149 1 1 1066 297 0 0 0 chr6 63124691 63124724 -86392313 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1066 20067 37 10 1 chr6 63124728 63127117 -86389920 + IAPEz-int LTR ERVK 4070 6479 -2 1 1066 3620 16 81 14 chr6 63127119 63127564 -86389473 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1066 253 312 90 48 chr6 63127776 63127921 -86389116 + LTR16E1 LTR ERVL 387 537 -1 1 1066 186 43 0 0 chr6 63128190 63128213 -86388824 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1066 333 0 0 0 chr6 63128213 63128249 -86388788 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1066 21 36 0 0 chr6 63128298 63128326 -86388711 + AT_rich Low_complexity Low_complexity 1 28 0 1 1066 1040 96 7 0 chr6 63128642 63128778 -86388259 + B1_Mus1 SINE Alu 5 141 -7 1 1066 249 33 0 0 chr6 63128781 63128811 -86388226 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1066 216 194 29 29 chr6 63128906 63128975 -86388062 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1 1066 1003 299 71 8 chr6 63129221 63129615 -86387422 + MTD LTR MaLR 1 419 0 1 1066 480 270 140 45 chr6 63132492 63132663 -86384374 + RLTR12B LTR ERVK 41 233 -295 1 1066 732 12 0 0 chr6 63132663 63132748 -86384289 + (GA)n Simple_repeat Simple_repeat 2 86 0 1 1066 480 270 140 45 chr6 63132748 63132797 -86384240 + RLTR12B LTR ERVK 234 282 -246 1 1066 192 125 0 0 chr6 63132817 63132849 -86384188 + (CCA)n Simple_repeat Simple_repeat 1 32 0 1 1066 2163 223 59 82 chr6 63132851 63133357 -86383680 - Lx2B LINE L1 -10 6990 6468 1 1066 1218 83 21 5 chr6 63133357 63133551 -86383486 + L1_Mus3 LINE L1 6436 6632 -6 1 1066 2163 223 59 82 chr6 63133551 63133689 -86383348 - Lx2B LINE L1 -533 6467 6361 1 1066 540 304 145 17 chr6 63135642 63135876 -86381161 - RMER15 LTR ERVL -16 559 296 1 1066 1472 141 10 101 chr6 63136837 63137145 -86379892 - Lx3B LINE L1 -3 6970 6691 1 1066 2777 133 25 0 chr6 63137130 63137565 -86379472 + Lx3C LINE L1 6233 6678 -298 1 1066 1632 314 87 29 chr6 63137692 63138534 -86378503 - Lx8 LINE L1 -6 7467 6577 1 1066 222 62 0 0 chr6 63138693 63138725 -86378312 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1066 2956 51 38 0 chr6 63140256 63140627 -86376410 + IAPEY_LTR LTR ERVK 1 385 0 1 1066 201 377 31 31 chr6 63140676 63140835 -86376202 + MER5A DNA MER1_type 31 189 0 1 1066 394 75 30 0 chr6 63141623 63141690 -86375347 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 1 1066 267 236 86 39 chr6 63141882 63142010 -86375027 - L1Md_F3 LINE L1 -13 5867 5743 1 1066 721 299 105 71 chr6 63142024 63142700 -86374337 + Lx9 LINE L1 6945 7643 -1 2 1066 533 279 54 100 chr6 63143391 63143761 -86373276 + Lx7 LINE L1 7338 7690 -6 2 1066 738 62 0 0 chr6 63143779 63143875 -86373162 + (GA)n Simple_repeat Simple_repeat 1 96 0 2 1066 3479 128 17 5 chr6 63144271 63144934 -86372103 - Lx4A LINE L1 -1083 5975 5293 2 1066 2765 205 18 7 chr6 63144941 63145486 -86371551 + Lx4B LINE L1 6002 6552 -506 2 1066 1124 214 36 65 chr6 63145491 63145770 -86371267 + Lx4B LINE L1 6786 7056 -2 2 1066 231 262 33 111 chr6 63146130 63146220 -86370817 + AluG_3 SINE Alu 148 218 -93 2 1066 250 293 67 0 chr6 63146287 63146362 -86370675 + ID4_ SINE ID 2 81 -2 2 1066 230 264 61 121 chr6 63147101 63147200 -86369837 - MER77 LTR ERVL -473 134 42 2 1066 27 49 0 0 chr6 63147244 63147285 -86369752 + AT_rich Low_complexity Low_complexity 1 41 0 2 1066 1846 190 52 44 chr6 63147339 63147796 -86369241 - RMER6B LTR ERVK 0 461 1 2 1066 263 161 18 0 chr6 63147812 63147868 -86369169 + CT-rich Low_complexity Low_complexity 2 58 0 2 1066 510 241 51 12 chr6 63147873 63148118 -86368919 - Lx9 LINE L1 -44 7600 7307 2 1066 618 253 70 0 chr6 63148116 63148274 -86368763 - Lx9 LINE L1 -817 6827 6659 2 1066 1567 249 14 17 chr6 63148300 63148713 -86368324 + L1_Rod LINE L1 3993 4404 -1443 2 1066 1233 258 118 106 chr6 63148719 63149618 -86367419 + Lx9 LINE L1 5801 6710 -934 2 1066 422 350 28 22 chr6 63149716 63149897 -86367140 + ORR1E LTR MaLR 6 187 -172 2 1066 407 159 0 14 chr6 63150062 63150132 -86366905 - U6 snRNA snRNA -27 80 12 2 1066 3766 94 2 17 chr6 63150132 63150698 -86366339 + L1_Mus2 LINE L1 6025 6566 0 2 1066 859 168 171 9 chr6 63150709 63150890 -86366147 - Lx2A1 LINE L1 -13 6995 6789 2 1066 3513 50 0 11 chr6 63150890 63151335 -86365702 + L1Md_F2 LINE L1 6140 6579 -3 2 1066 859 168 171 9 chr6 63151335 63151364 -86365673 - Lx2A1 LINE L1 -220 6788 6751 2 1066 289 386 97 18 chr6 63152441 63152821 -86364216 + MLT1C LTR MaLR 26 435 -32 2 1066 23 0 0 0 chr6 63152963 63152986 -86364051 + AT_rich Low_complexity Low_complexity 1 23 0 2 1066 24 32 0 0 chr6 63154175 63154206 -86362831 + AT_rich Low_complexity Low_complexity 1 31 0 2 1066 1257 279 72 11 chr6 63154273 63154650 -86362387 + MTD LTR MaLR 5 404 -15 2 1066 2732 262 86 46 chr6 63154659 63155500 -86361537 + MTD-int LTR MaLR 1 874 -384 2 1066 37267 22 1 8 chr6 63155533 63160718 -86356319 + L1Md_A LINE L1 440 5586 -297 2 1066 8328 36 1 0 chr6 63160718 63161711 -86355326 + L1Md_A LINE L1 5587 6580 -2 2 1066 526 256 62 62 chr6 63161722 63162163 -86354874 + MTD-int LTR MaLR 858 1249 -9 2 1066 1424 281 27 29 chr6 63162207 63162621 -86354416 + MTD LTR MaLR 5 417 -2 2 1066 1152 285 21 24 chr6 63162948 63163368 -86353669 - MTD LTR MaLR 0 419 1 2 1066 254 156 16 0 chr6 63164166 63164230 -86352807 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1066 1101 183 48 5 chr6 63164412 63164621 -86352416 - RMER1A Other Other -77 953 736 2 1066 651 60 0 0 chr6 63164624 63164708 -86352329 + (CATA)n Simple_repeat Simple_repeat 2 85 0 2 1066 1700 306 46 50 chr6 63164720 63165375 -86351662 - RMER1B Other Other -408 658 7 2 1066 23 0 0 0 chr6 63165566 63165589 -86351448 + AT_rich Low_complexity Low_complexity 1 23 0 2 1066 579 293 18 54 chr6 63166311 63166471 -86350566 - B3 SINE B2 -34 182 31 2 1066 1976 68 39 45 chr6 63166471 63166780 -86350257 + L1_Mus3 LINE L1 6331 6637 -1 2 1066 455 292 24 55 chr6 63166780 63166801 -86350236 - B3A SINE B2 -168 30 15 2 1066 663 78 0 0 chr6 63166812 63166902 -86350135 + (GAAAA)n Simple_repeat Simple_repeat 2 91 0 2 1066 229 225 0 0 chr6 63166902 63166942 -86350095 - B3 SINE B2 -176 40 1 2 1066 14076 62 2 0 chr6 63167695 63170190 -86346847 - L1Md_F2 LINE L1 -2 6580 4080 2 1066 1096 286 102 44 chr6 63170654 63171715 -86345322 + L1_Rod LINE L1 896 2039 -3808 2 1066 983 106 0 7 chr6 63171742 63171894 -86345143 + (GAA)n Simple_repeat Simple_repeat 3 153 0 2 1066 502 282 69 13 chr6 63171900 63172052 -86344985 + B3 SINE B2 3 151 -44 2 1066 252 182 0 127 chr6 63172053 63172116 -86344921 - L1_Mur3 LINE L1 -2063 3817 3763 2 1066 297 51 0 0 chr6 63172143 63172182 -86344855 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1066 21 95 0 0 chr6 63172375 63172438 -86344599 + AT_rich Low_complexity Low_complexity 1 63 0 2 1066 8824 141 15 27 chr6 63173103 63175455 -86341582 - L1VL4 LINE L1 -1044 2515 194 2 1066 531 31 0 0 chr6 63175508 63175573 -86341464 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1066 23 0 0 0 chr6 63175641 63175664 -86341373 + AT_rich Low_complexity Low_complexity 1 23 0 2 1066 24 32 0 0 chr6 63175684 63175715 -86341322 + AT_rich Low_complexity Low_complexity 1 31 0 2 1066 64 43 0 0 chr6 63175864 63175956 -86341081 + AT_rich Low_complexity Low_complexity 1 92 0 2 1066 260 319 84 11 chr6 63175986 63176176 -86340861 - L1M2 LINE L1 -413 5776 5573 2 1066 199 179 15 15 chr6 63176252 63176320 -86340717 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 133 342 361 96 5 chr6 63176600 63176809 -86340228 - L1M2 LINE L1 -1088 5055 4828 2 1067 494 255 27 8 chr6 63176809 63176983 -86340054 + L1_Rod LINE L1 4630 4814 -1033 2 1067 5065 220 72 26 chr6 63177964 63179621 -86337416 - Lx5 LINE L1 0 7050 5282 2 1067 21 0 0 0 chr6 63179621 63179642 -86337395 + AT_rich Low_complexity Low_complexity 1 21 0 2 1067 8047 127 9 2 chr6 63179670 63180928 -86336109 + L1_Mur1 LINE L1 4578 5844 -42 2 1067 4654 178 50 17 chr6 63180927 63181979 -86335058 - Lx5 LINE L1 -2343 3543 2457 2 1067 5571 113 13 3 chr6 63181979 63182825 -86334212 - L1_Mus3 LINE L1 -1 6637 5784 2 1067 7689 136 25 14 chr6 63182825 63184095 -86332942 + L1_Mus3 LINE L1 4534 5817 -66 2 1067 3801 189 33 51 chr6 63184094 63185470 -86331567 - Lx5 LINE L1 -3415 2471 984 2 1067 3926 181 50 17 chr6 63185468 63186339 -86330698 - L1_Mur2 LINE L1 -1061 4816 3917 2 1067 34413 77 4 4 chr6 63186336 63192557 -86324480 - L1Md_F2 LINE L1 0 6585 265 2 1067 13227 166 40 11 chr6 63192552 63193983 -86323054 - L1_Mur2 LINE L1 -1942 3935 2488 2 1067 3753 71 22 4 chr6 63193983 63194481 -86322556 - L1Md_F2 LINE L1 -2 6580 6074 2 1067 13227 166 40 11 chr6 63194481 63194831 -86322206 - L1_Mur2 LINE L1 -3390 2487 2154 2 1067 432 0 0 0 chr6 63194831 63194879 -86322158 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1067 13227 166 40 11 chr6 63194879 63194959 -86322078 - L1_Mur2 LINE L1 -3724 2153 1996 2 1067 414 0 0 0 chr6 63194959 63195005 -86322032 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1067 13227 209 58 13 chr6 63195005 63196220 -86320817 - L1_Mur2 LINE L1 -3882 1995 696 2 1067 351 0 0 0 chr6 63196645 63196684 -86320353 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1067 428 35 17 0 chr6 63196898 63196956 -86320081 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 2 1067 1128 67 0 0 chr6 63198064 63198214 -86318823 + (TCTA)n Simple_repeat Simple_repeat 2 151 0 2 1067 201 74 0 0 chr6 63198363 63198390 -86318647 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1067 429 109 0 0 chr6 63198725 63198789 -86318248 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 1067 553 259 21 7 chr6 63199141 63199285 -86317752 - B1_Mur3 SINE Alu 0 149 4 2 1067 42 89 0 0 chr6 63200128 63200240 -86316797 + AT_rich Low_complexity Low_complexity 1 112 0 2 1067 353 289 113 9 chr6 63201619 63201734 -86315303 + B3 SINE B2 84 210 -6 2 1067 757 110 0 0 chr6 63202850 63202959 -86314078 + Lx5 LINE L1 5865 5973 -1077 2 1067 229 300 133 0 chr6 63203003 63203093 -86313944 + PB1 SINE Alu 23 124 -3 2 1067 1383 241 75 46 chr6 63203709 63204097 -86312940 + MTD LTR MaLR 6 404 -15 2 1067 189 0 0 0 chr6 63207780 63207801 -86309236 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1067 342 0 0 0 chr6 63208020 63208058 -86308979 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1067 24 0 0 0 chr6 63212192 63212216 -86304821 + AT_rich Low_complexity Low_complexity 1 24 0 2 1067 25 31 0 0 chr6 63213177 63213209 -86303828 + AT_rich Low_complexity Low_complexity 1 32 0 2 1067 543 272 24 41 chr6 63213637 63213818 -86303219 + Lx9 LINE L1 6601 6877 -767 2 1067 278 392 18 42 chr6 63214047 63214212 -86302825 - L2a LINE L2 -329 3097 2937 2 1067 3094 68 16 36 chr6 63215156 63215599 -86301438 + Lx3_Mus LINE L1 6576 7009 0 2 1067 342 0 0 0 chr6 63217930 63217968 -86299069 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1067 449 47 16 0 chr6 63217969 63218033 -86299004 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1067 267 286 65 19 chr6 63219072 63219179 -86297858 - PB1D9 SINE Alu -8 112 1 2 1067 306 0 0 0 chr6 63222424 63222458 -86294579 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1067 423 174 0 0 chr6 63222458 63222544 -86294493 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 1067 453 19 0 0 chr6 63225962 63226016 -86291021 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1067 3904 94 55 19 chr6 63226580 63227175 -86289862 - L1_Mus2 LINE L1 -2 6564 5948 2 1067 247 245 67 58 chr6 63227491 63227595 -86289442 + PB1D10 SINE Alu 13 117 0 2 1067 3213 50 139 0 chr6 63227732 63228170 -86288867 - L1Md_F2 LINE L1 -517 5366 4868 2 1067 1746 46 23 0 chr6 63228157 63228376 -86288661 + L1Md_F2 LINE L1 5363 5586 -297 2 1067 7879 53 1 1 chr6 63228376 63229368 -86287669 + L1Md_F2 LINE L1 5587 6578 -4 2 1067 195 42 0 0 chr6 63230580 63230604 -86286433 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1067 602 126 0 10 chr6 63232894 63232998 -86284039 + (TCCC)n Simple_repeat Simple_repeat 3 105 0 2 1067 405 0 0 0 chr6 63232998 63233043 -86283994 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1067 186 71 0 0 chr6 63233162 63233190 -86283847 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 1067 653 128 63 8 chr6 63233190 63233316 -86283721 - Lx LINE L1 -33 6621 6489 2 1067 216 135 0 0 chr6 63233379 63233416 -86283621 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1067 447 246 8 76 chr6 63233416 63233535 -86283502 - RSINE1 SINE B4 0 165 55 2 1067 1117 96 0 0 chr6 63233708 63233854 -86283183 - B1_Mus2 SINE Alu 0 147 2 2 1067 603 67 0 11 chr6 63233977 63234067 -86282970 + L1_Mus2 LINE L1 6478 6566 0 2 1067 611 245 48 70 chr6 63234581 63234819 -86282218 + MLT1K LTR MaLR 337 579 -31 2 1067 267 31 0 0 chr6 63235843 63235875 -86281162 + (ATATG)n Simple_repeat Simple_repeat 4 35 0 2 1067 245 192 82 0 chr6 63237049 63237122 -86279915 + Lx2B LINE L1 6857 6935 -65 2 1067 29 28 0 0 chr6 63237134 63237170 -86279867 + AT_rich Low_complexity Low_complexity 1 36 0 2 1067 6748 137 43 34 chr6 63237170 63238365 -86278672 - Lx3B LINE L1 -2 6971 5765 2 1067 1618 342 54 22 chr6 63238365 63239310 -86277727 - Lx7 LINE L1 -472 7224 6250 2 1067 23 0 0 0 chr6 63240364 63240387 -86276650 + AT_rich Low_complexity Low_complexity 1 23 0 2 1067 233 242 48 0 chr6 63240557 63240619 -86276418 + AmnSINE1 SINE SINE 508 572 -3 2 1067 577 247 203 43 chr6 63241040 63241083 -86275954 - MT2A LTR ERVL 0 601 539 3 1067 550 0 29 0 chr6 63241083 63241153 -86275884 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 3 1067 811 193 119 126 chr6 63241153 63241529 -86275508 - MT2A LTR ERVL -63 538 4 3 1067 23 0 0 0 chr6 63242180 63242203 -86274834 + AT_rich Low_complexity Low_complexity 1 23 0 3 1067 2476 45 0 22 chr6 63242593 63242909 -86274128 + L1_Mus2 LINE L1 5626 5934 -632 3 1067 1573 106 12 4 chr6 63242909 63243155 -86273882 + L1_Mus3 LINE L1 6391 6638 0 3 1067 279 0 0 0 chr6 63243671 63243702 -86273335 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1067 1097 78 0 0 chr6 63243704 63243846 -86273191 - B1_Mm SINE Alu -4 143 2 3 1067 21 36 0 0 chr6 63244021 63244049 -86272988 + AT_rich Low_complexity Low_complexity 1 28 0 3 1067 2552 268 79 2 chr6 63244049 63244693 -86272344 - Lx6 LINE L1 -9 7451 6758 3 1067 851 144 7 0 chr6 63244748 63244901 -86272136 + CT-rich Low_complexity Low_complexity 4 157 0 3 1067 2213 281 70 5 chr6 63244901 63245563 -86271474 - Lx6 LINE L1 -725 6735 6031 3 1067 24 0 0 0 chr6 63247250 63247274 -86269763 + AT_rich Low_complexity Low_complexity 1 24 0 3 1067 1978 58 0 11 chr6 63247313 63247575 -86269462 - L1Md_F2 LINE L1 0 6582 6324 3 1067 6410 162 54 4 chr6 63247683 63248817 -86268220 - Lx4A LINE L1 -75 6983 5794 3 1067 7773 133 42 28 chr6 63248818 63250243 -86266794 + Lx5 LINE L1 4342 5795 -1255 3 1067 450 273 171 70 chr6 63250354 63250653 -86266384 - Lx9 LINE L1 -448 7196 6868 3 1067 1390 239 88 45 chr6 63250669 63251360 -86265677 - L1_Rod LINE L1 -472 5375 4655 3 1067 280 224 15 15 chr6 63251403 63251471 -86265566 - L1_Rod LINE L1 -639 5208 5141 3 1067 768 244 31 68 chr6 63251469 63251812 -86265225 - L1_Rod LINE L1 -3127 2753 2449 3 1067 323 78 20 0 chr6 63252460 63252511 -86264526 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 3 1067 1086 102 0 0 chr6 63252878 63253025 -86264012 + B1_Mus1 SINE Alu 2 148 0 3 1067 363 155 0 0 chr6 63253025 63253109 -86263928 + A-rich Low_complexity Low_complexity 1 84 0 3 1067 210 176 0 0 chr6 63253145 63253196 -86263841 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1067 1686 81 165 13 chr6 63253347 63253624 -86263413 - MT2C_Mm LTR ERVL 0 475 186 3 1067 434 290 116 42 chr6 63253629 63253845 -86263192 - Lx8 LINE L1 -664 6809 6578 3 1067 21 57 0 0 chr6 63254965 63255000 -86262037 + AT_rich Low_complexity Low_complexity 1 35 0 3 1067 234 131 0 103 chr6 63255215 63255283 -86261754 + B1_Mm SINE Alu 87 147 0 3 1067 211 125 36 0 chr6 63255284 63255314 -86261723 + A-rich Low_complexity Low_complexity 3 32 0 3 1067 243 0 0 0 chr6 63255314 63255341 -86261696 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 3 1067 211 125 36 0 chr6 63255341 63255366 -86261671 + A-rich Low_complexity Low_complexity 33 59 0 3 1067 1811 224 140 12 chr6 63255471 63255978 -86261059 - RMER15 LTR ERVL -2 573 2 3 1067 1852 279 87 48 chr6 63255978 63256747 -86260290 - RMER15-int LTR ERVL -35 4964 4166 3 1067 3110 115 25 6 chr6 63256763 63257252 -86259785 - Lx LINE L1 -18 6636 6139 3 1067 22 0 0 0 chr6 63257252 63257274 -86259763 + AT_rich Low_complexity Low_complexity 1 22 0 3 1067 3746 270 19 24 chr6 63257425 63258427 -86258610 - RMER15-int LTR ERVL -2774 2225 1229 3 1067 239 157 0 19 chr6 63258630 63258682 -86258355 + (TATG)n Simple_repeat Simple_repeat 2 52 0 3 1067 285 283 191 21 chr6 63258863 63259051 -86257986 + MER2 DNA MER2_type 103 322 -23 3 1067 218 283 125 62 chr6 63261556 63261684 -86255353 + MIRb SINE MIR 95 230 -38 3 1067 190 391 0 0 chr6 63262557 63262626 -86254411 - L2c LINE L2 -38 3349 3281 3 1067 470 327 53 0 chr6 63262834 63262984 -86254053 + RSINE1 SINE B4 8 165 0 3 1067 1364 191 112 56 chr6 63263231 63263318 -86253719 - ORR1C1 LTR MaLR 0 378 285 3 1067 504 41 0 0 chr6 63263318 63263391 -86253646 + L1_Mus3 LINE L1 6565 6637 -1 3 1067 1364 191 112 56 chr6 63263391 63263659 -86253378 - ORR1C1 LTR MaLR -94 284 4 3 1067 348 383 43 28 chr6 63264605 63264860 -86252177 - MARNA DNA Mariner -158 428 170 3 1067 734 333 37 23 chr6 63265139 63265489 -86251548 + Lx8 LINE L1 6705 7059 -414 3 1067 284 267 97 50 chr6 63265519 63265703 -86251334 + MTE2b LTR MaLR 211 408 -13 3 1067 333 0 0 0 chr6 63265857 63265894 -86251143 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1067 33 25 0 0 chr6 63265921 63265961 -86251076 + AT_rich Low_complexity Low_complexity 1 40 0 3 1067 1248 231 136 6 chr6 63266312 63266643 -86250394 - ORR1C2 LTR MaLR -8 376 3 3 1067 462 18 0 0 chr6 63266669 63266724 -86250313 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 3 1067 968 318 23 10 chr6 63266970 63267272 -86249765 + MTE2b LTR MaLR 18 323 -56 3 1067 957 124 0 22 chr6 63267281 63267463 -86249574 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3 1067 230 250 36 0 chr6 63267463 63267519 -86249518 + CT-rich Low_complexity Low_complexity 2 59 0 3 1067 1161 68 0 0 chr6 63267689 63267835 -86249202 - B1_Mus1 SINE Alu -2 146 1 3 1067 186 380 0 61 chr6 63268609 63268707 -86248330 + L3 LINE CR1 4396 4487 -2 3 1067 4458 65 14 12 chr6 63270384 63270977 -86246060 - L1Md_F2 LINE L1 -11 6571 5978 3 1067 365 347 11 57 chr6 63270987 63271164 -86245873 - MER90a LTR ERV1 -412 202 34 3 1067 22 35 0 0 chr6 63272192 63272221 -86244816 + AT_rich Low_complexity Low_complexity 1 29 0 3 1067 469 290 21 35 chr6 63272583 63272726 -86244311 + RSINE1 SINE B4 2 142 -23 3 1067 216 86 0 0 chr6 63272738 63272773 -86244264 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 3 1067 870 301 66 22 chr6 63273161 63273524 -86243513 - MTEa LTR MaLR 0 379 1 3 1067 2167 339 70 31 chr6 63273525 63274466 -86242571 - MTEa-int LTR MaLR -2 1578 601 3 1067 519 351 6 22 chr6 63274495 63274673 -86242364 - MTEa-int LTR MaLR -1404 176 2 3 1067 655 346 66 30 chr6 63274698 63274998 -86242039 - MTEa LTR MaLR -24 355 45 3 1067 965 174 237 26 chr6 63274998 63275378 -86241659 - RMER6B LTR ERVK 0 461 2 3 1067 5523 44 13 11 chr6 63275822 63276532 -86240505 - L1Md_F2 LINE L1 -13 6569 5859 3 1067 3083 62 3 0 chr6 63276532 63276917 -86240120 + L1Md_F2 LINE L1 5493 5878 -5 3 1067 274 125 0 0 chr6 63276971 63277019 -86240018 - L1_Mur2 LINE L1 -1400 4477 4430 3 1067 409 317 70 47 chr6 63277476 63277691 -86239346 + MER2 DNA MER2_type 38 257 -88 3 1067 21 57 0 0 chr6 63280048 63280083 -86236954 + AT_rich Low_complexity Low_complexity 1 35 0 3 1067 22 0 0 0 chr6 63280924 63280946 -86236091 + AT_rich Low_complexity Low_complexity 1 22 0 3 1067 180 0 0 0 chr6 63281361 63281381 -86235656 + (TAA)n Simple_repeat Simple_repeat 2 21 0 3 1067 21 82 0 0 chr6 63284791 63284840 -86232197 + AT_rich Low_complexity Low_complexity 1 49 0 3 1067 1528 204 86 10 chr6 63284889 63285286 -86231751 - L1MA5 LINE L1 -385 5915 5455 3 1067 285 310 47 81 chr6 63285293 63285465 -86231572 - RLTR18 LTR ERVK -8 608 443 3 1067 331 222 12 12 chr6 63285468 63285550 -86231487 - L1MA5 LINE L1 -712 5168 5087 3 1067 4789 197 59 96 chr6 63285546 63286779 -86230258 - L1MA5 LINE L1 -1446 4434 3328 3 1067 2540 88 37 3 chr6 63286779 63287155 -86229882 - L1_Mus2 LINE L1 -2 6564 6176 3 1067 4789 197 59 96 chr6 63287155 63287444 -86229593 - L1MA5 LINE L1 -2553 3327 3007 3 1067 504 0 0 0 chr6 63287444 63287500 -86229537 + (TTTTC)n Simple_repeat Simple_repeat 2 57 0 3 1067 4789 197 59 96 chr6 63287500 63287575 -86229462 - L1MA5 LINE L1 -2874 3006 2897 3 1067 421 309 88 0 chr6 63287581 63287762 -86229275 - Lx8 LINE L1 -64 7409 7213 3 1067 380 250 92 29 chr6 63287816 63287989 -86229048 - Lx8 LINE L1 -352 7121 6938 3 1067 192 125 0 0 chr6 63288073 63288105 -86228932 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1067 557 339 32 20 chr6 63288381 63288628 -86228409 + B4A SINE B4 2 251 -41 3 1067 343 336 53 9 chr6 63289053 63289167 -86227870 + PB1D7 SINE Alu 2 120 0 3 1067 279 54 0 0 chr6 63289300 63289337 -86227700 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1067 807 316 75 8 chr6 63289479 63289855 -86227182 - Lx8 LINE L1 -4 7469 7069 3 1067 21 71 0 0 chr6 63290156 63290198 -86226839 + AT_rich Low_complexity Low_complexity 1 42 0 3 1067 651 88 0 0 chr6 63290230 63290321 -86226716 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 3 1067 23 33 0 0 chr6 63290855 63290885 -86226152 + AT_rich Low_complexity Low_complexity 1 30 0 3 1067 21 0 0 0 chr6 63292196 63292217 -86224820 + AT_rich Low_complexity Low_complexity 1 21 0 3 1067 721 272 134 35 chr6 63294059 63294363 -86222674 - Lx2B LINE L1 -5 7003 6659 3 1067 1069 346 76 31 chr6 63294705 63295458 -86221579 - Lx8 LINE L1 -414 7059 6269 3 1067 1309 28 96 0 chr6 63295458 63295636 -86221401 + L1Md_F3 LINE L1 6390 6584 0 3 1067 1069 346 76 31 chr6 63295636 63295688 -86221349 - Lx8 LINE L1 -1205 6268 6218 3 1067 833 107 8 0 chr6 63295850 63295981 -86221056 + (TTTC)n Simple_repeat Simple_repeat 4 135 0 3 1067 23 0 0 0 chr6 63296041 63296064 -86220973 + AT_rich Low_complexity Low_complexity 1 23 0 3 1067 438 286 79 20 chr6 63296289 63296518 -86220519 - RMER20B LTR ERVK 0 516 280 3 1067 24 32 0 0 chr6 63297704 63297735 -86219302 + AT_rich Low_complexity Low_complexity 1 31 0 3 1067 27 49 0 0 chr6 63299099 63299140 -86217897 + AT_rich Low_complexity Low_complexity 1 41 0 3 1067 584 238 168 22 chr6 63300293 63300478 -86216559 - B3 SINE B2 -2 214 3 3 1067 490 252 30 0 chr6 63301080 63301179 -86215858 + URR1B DNA MER1_type 1 102 -123 3 1067 1061 58 26 7 chr6 63301179 63301334 -86215703 - L1Md_F3 LINE L1 -2 6582 6425 3 1067 24461 67 7 4 chr6 63301334 63305153 -86211884 - L1Md_F3 LINE L1 -1460 4423 593 3 1067 589 188 8 45 chr6 63305154 63305288 -86211749 + URR1B DNA MER1_type 91 219 -6 3 1067 342 0 0 0 chr6 63305718 63305756 -86211281 + (CTATA)n Simple_repeat Simple_repeat 3 40 0 3 1067 353 275 27 27 chr6 63305915 63306061 -86210976 + CT-rich Low_complexity Low_complexity 1 146 0 3 1067 7659 87 17 1 chr6 63306061 63307277 -86209760 - L1_Mus3 LINE L1 -2 6636 5403 3 133 5271 144 23 6 chr6 63307271 63308181 -86208856 + L1_Mus3 LINE L1 4497 5422 -461 3 1068 1692 244 43 13 chr6 63308860 63309255 -86207782 + MTC LTR MaLR 1 407 -14 3 1068 277 323 60 30 chr6 63309824 63309990 -86207047 + MIR SINE MIR 42 212 -50 3 1068 198 71 0 0 chr6 63310619 63310647 -86206390 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1068 946 272 55 44 chr6 63311089 63311279 -86205758 - ORR1D1 LTR MaLR -8 366 165 3 1068 641 13 13 0 chr6 63311279 63311357 -86205680 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 1068 946 272 55 44 chr6 63311357 63311528 -86205509 - ORR1D1 LTR MaLR -210 164 2 3 1068 3000 126 34 13 chr6 63312020 63312205 -86204832 - Lx3A LINE L1 -30 6951 6758 3 1068 207 0 0 0 chr6 63312205 63312228 -86204809 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 1068 369 0 0 0 chr6 63312228 63312268 -86204769 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1068 3000 119 164 8 chr6 63312268 63312825 -86204212 - Lx3A LINE L1 -224 6757 6118 3 1068 12402 110 18 17 chr6 63312845 63313995 -86203042 - Lx3A LINE L1 0 5886 4738 3 1068 306 0 0 0 chr6 63313995 63314029 -86203008 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4 1068 12402 110 18 17 chr6 63314029 63314843 -86202194 - Lx3A LINE L1 -1149 4737 3920 3 1068 1719 127 0 14 chr6 63314853 63315140 -86201897 + Lx3A LINE L1 3627 3909 -1977 3 1068 897 143 7 0 chr6 63315142 63315282 -86201755 + Lx2 LINE L1 6677 6817 -180 4 1068 3139 137 26 44 chr6 63315282 63315855 -86201182 + Lx3A LINE L1 6416 6978 -3 4 1068 460 356 90 0 chr6 63315977 63316165 -86200872 + MTD LTR MaLR 13 217 -202 4 1068 2039 208 2 14 chr6 63316180 63316615 -86200422 + L1_Mur3 LINE L1 4966 5395 -485 4 1068 1325 260 163 88 chr6 63316619 63317232 -86199805 + MTD-int LTR MaLR 485 1273 -690 4 1068 2055 31 11 11 chr6 63317338 63317599 -86199438 - L1Md_F2 LINE L1 0 6584 6324 4 1068 4325 44 92 0 chr6 63317599 63318361 -86198676 - L1Md_F2 LINE L1 -509 6073 5242 4 1068 359 254 81 16 chr6 63318437 63318561 -86198476 + MTD-int LTR MaLR 1117 1248 -10 4 1068 474 296 57 117 chr6 63318571 63318793 -86198244 + MTD LTR MaLR 1 208 -211 4 1068 4758 191 54 7 chr6 63318793 63319782 -86197255 + RMER12B LTR ERVK 1 1035 -369 4 1068 3571 210 66 16 chr6 63319785 63320469 -86196568 + RMER12B LTR ERVK 471 1200 -204 4 1068 267 31 0 0 chr6 63320469 63320501 -86196536 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1068 3571 210 66 16 chr6 63320501 63320570 -86196467 + RMER12B LTR ERVK 1201 1262 -142 4 1068 387 0 0 0 chr6 63320570 63320613 -86196424 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1068 369 0 0 0 chr6 63320613 63320653 -86196384 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1068 3571 210 66 16 chr6 63320653 63320786 -86196251 + RMER12B LTR ERVK 1263 1402 -2 4 1068 577 301 45 6 chr6 63320815 63320992 -86196045 + MTD LTR MaLR 199 382 -37 4 1068 5339 93 11 10 chr6 63321094 63321890 -86195147 - L1_Mus3 LINE L1 0 6638 5842 4 1068 1624 83 31 0 chr6 63321890 63322119 -86194918 + L1_Mus3 LINE L1 5634 5869 -769 4 1068 549 0 0 0 chr6 63322769 63322830 -86194207 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1068 21 57 0 0 chr6 63323209 63323244 -86193793 + AT_rich Low_complexity Low_complexity 1 35 0 4 1068 461 324 65 5 chr6 63323255 63323441 -86193596 + B3A SINE B2 2 198 0 4 1068 403 350 85 16 chr6 63323965 63324212 -86192825 - MLT1A LTR MaLR -62 312 49 4 1068 2158 127 36 19 chr6 63324987 63325348 -86191689 + Lx LINE L1 6288 6654 0 4 1068 376 254 95 35 chr6 63326510 63326710 -86190327 + RCHARR1 DNA MER1_type 756 967 -7 4 1068 1817 93 0 0 chr6 63329223 63329470 -86187567 - L1_Mus2 LINE L1 -1 6565 6319 4 1068 369 23 0 0 chr6 63329470 63329514 -86187523 + L1_Mus2 LINE L1 6286 6329 -237 4 1068 201 329 39 26 chr6 63330109 63330187 -86186850 - L2b LINE L2 0 3375 3297 4 1068 820 292 88 37 chr6 63331961 63332313 -86184724 + ORR1D2 LTR MaLR 1 370 0 4 1068 22 35 0 0 chr6 63332460 63332489 -86184548 + AT_rich Low_complexity Low_complexity 1 29 0 4 1068 1273 179 8 4 chr6 63332898 63333150 -86183887 + Lx2A1 LINE L1 5143 5395 -482 4 1068 6319 69 93 0 chr6 63333153 63334022 -86183015 + L1Md_F2 LINE L1 5633 6582 0 4 1068 915 117 28 1 chr6 63334022 63334181 -86182856 + Lx2A1 LINE L1 5791 5951 -687 4 1068 3022 41 0 0 chr6 63335549 63335912 -86181125 - L1Md_T LINE L1 -1 6581 6219 4 1068 704 240 5 64 chr6 63336051 63336238 -86180799 + Lx6 LINE L1 7254 7429 -31 4 1068 632 102 0 10 chr6 63336238 63336337 -86180700 + (GA)n Simple_repeat Simple_repeat 1 98 0 4 1068 212 111 22 0 chr6 63336414 63336459 -86180578 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 4 1068 1211 48 0 0 chr6 63336460 63336607 -86180430 - B1_Mus2 SINE Alu 0 147 1 4 1068 717 164 26 105 chr6 63336829 63337020 -86180017 + B2_Mm2 SINE B2 1 176 -19 4 1068 443 318 69 80 chr6 63337569 63338126 -86178911 - L1_Mur3 LINE L1 -1808 4335 3753 4 1068 363 280 86 27 chr6 63338240 63338427 -86178610 - B3A SINE B2 0 198 1 4 1068 2975 31 0 3 chr6 63339737 63340092 -86176945 - IAPEY2_LTR LTR ERVK -3 354 1 4 1068 567 336 18 25 chr6 63340328 63340603 -86176434 - B4A SINE B4 -18 274 2 4 1068 768 321 0 0 chr6 63341700 63341893 -86175144 + B3 SINE B2 3 195 -21 4 1068 25 0 0 0 chr6 63341909 63341934 -86175103 + AT_rich Low_complexity Low_complexity 1 25 0 4 1068 4839 154 122 27 chr6 63341934 63342872 -86174165 - L1_Mus4 LINE L1 -6 6630 5604 4 1068 263 28 0 27 chr6 63343149 63343186 -86173851 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1068 896 201 16 123 chr6 63343188 63343505 -86173532 + Lx7 LINE L1 7413 7695 -1 4 1068 35 24 0 0 chr6 63343553 63343595 -86173442 + AT_rich Low_complexity Low_complexity 1 42 0 4 1068 779 97 5 49 chr6 63343831 63344016 -86173021 + CT-rich Low_complexity Low_complexity 4 180 0 4 1068 870 100 0 48 chr6 63344027 63344216 -86172821 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 4 1068 224 77 18 55 chr6 63344229 63344284 -86172753 + (TCTCCC)n Simple_repeat Simple_repeat 2 54 0 4 1068 758 115 8 47 chr6 63344290 63344526 -86172511 + CT-rich Low_complexity Low_complexity 1 227 0 4 1068 1272 279 138 27 chr6 63344529 63345381 -86171656 - Lx9 LINE L1 -298 7346 6400 4 1068 681 70 0 66 chr6 63345454 63345576 -86171461 + Lx LINE L1 6541 6654 0 4 1068 526 291 27 60 chr6 63346101 63346284 -86170753 - B4A SINE B4 -113 179 3 4 1068 253 270 0 16 chr6 63346410 63346474 -86170563 - ID_B1 SINE B4 -9 215 153 4 1068 273 183 0 0 chr6 63346515 63346575 -86170462 + (TTG)n Simple_repeat Simple_repeat 1 60 0 4 1068 201 129 0 0 chr6 63346620 63346651 -86170386 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1068 436 349 56 19 chr6 63347136 63347460 -86169577 + L1MD3 LINE L1 5676 6011 -1984 4 1068 348 167 0 0 chr6 63347602 63347674 -86169363 - Lx LINE L1 -2 6652 6581 4 1068 7335 131 26 231 chr6 63347676 63348202 -86168835 + L1_Mm LINE L1 3791 4317 -1566 4 1068 5348 94 0 0 chr6 63348202 63348928 -86168109 + L1_Mus1 LINE L1 5841 6566 -1 4 1068 7335 131 26 231 chr6 63348928 63349229 -86167808 + L1_Mm LINE L1 4318 4627 -1256 4 1068 321 82 0 0 chr6 63349229 63349278 -86167759 + (CAA)n Simple_repeat Simple_repeat 2 50 0 4 1068 7335 131 26 231 chr6 63349278 63349525 -86167512 + L1_Mm LINE L1 4628 4860 -1023 4 1068 1333 84 11 0 chr6 63349525 63349810 -86167227 - L1_Mus2 LINE L1 0 6566 6368 4 1068 7335 131 26 231 chr6 63349810 63350350 -86166687 + L1_Mm LINE L1 4861 4944 -939 4 1068 1099 87 6 6 chr6 63350350 63350523 -86166514 - L1Md_F2 LINE L1 0 6582 6410 4 1068 7335 131 26 231 chr6 63350523 63351157 -86165880 + L1_Mm LINE L1 4945 5578 -305 4 1068 203 79 26 0 chr6 63351633 63351671 -86165366 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 4 1068 5425 87 8 1 chr6 63354271 63355032 -86162005 - L1_Mus2 LINE L1 0 6566 5801 4 1068 2107 49 11 4 chr6 63355618 63355885 -86161152 - L1Md_F3 LINE L1 -15 6569 6301 4 1068 253 214 167 11 chr6 63356540 63356630 -86160407 + U6 snRNA snRNA 1 104 -3 4 1068 407 288 0 0 chr6 63356806 63356886 -86160151 + B1F SINE Alu 3 82 -67 4 1068 246 264 42 0 chr6 63357610 63357682 -86159355 - MTEa LTR MaLR -15 364 290 4 1068 468 0 0 0 chr6 63359829 63359881 -86157156 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1068 454 186 68 0 chr6 63360896 63361014 -86156023 + Lx9 LINE L1 7518 7643 -1 4 1068 349 161 16 0 chr6 63361574 63361636 -86155401 - HAL1-3A_ME LINE L1 -820 2038 1976 4 1068 246 294 12 0 chr6 63361645 63361730 -86155307 + (TG)n Simple_repeat Simple_repeat 2 87 0 4 1068 182 62 31 0 chr6 63362038 63362070 -86154967 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 4 1068 21 0 0 0 chr6 63362662 63362683 -86154354 + AT_rich Low_complexity Low_complexity 1 21 0 4 1068 696 162 0 33 chr6 63363065 63363218 -86153819 - Lx3A LINE L1 -5 6976 6829 4 1068 814 124 240 6 chr6 63363323 63363481 -86153556 + L1_Mm LINE L1 5398 5576 -307 4 1068 3985 198 11 3 chr6 63363486 63364227 -86152810 + Lx LINE L1 5845 6591 -63 4 1068 498 96 0 0 chr6 63364248 63364321 -86152716 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 1068 1065 134 0 0 chr6 63364323 63364495 -86152542 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 4 1068 3333 144 69 13 chr6 63364496 63365092 -86151945 + Lx LINE L1 6001 6629 -25 4 1068 6145 36 0 3 chr6 63365493 63366225 -86150812 - L1Md_F3 LINE L1 -14 6570 5841 4 1068 298 322 134 21 chr6 63366225 63366463 -86150574 - Lx8 LINE L1 -35 7438 7174 4 1068 21 89 0 0 chr6 63367862 63367918 -86149119 + AT_rich Low_complexity Low_complexity 1 56 0 4 1068 357 270 62 0 chr6 63368955 63369133 -86147904 - L1M3 LINE L1 -1573 4567 4379 4 1068 274 323 29 58 chr6 63369137 63369344 -86147693 + Lx9 LINE L1 7238 7438 -206 4 1068 25 0 0 0 chr6 63369511 63369536 -86147501 + AT_rich Low_complexity Low_complexity 1 25 0 4 1068 2000 225 41 11 chr6 63370120 63370588 -86146449 + RMER5 LTR ERV1 14 495 -39 4 1068 210 71 0 0 chr6 63372995 63373023 -86144014 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1068 298 365 67 31 chr6 63373200 63373406 -86143631 - B4 SINE B4 -86 206 4 4 1068 721 230 42 32 chr6 63373431 63373594 -86143443 - ORR1D1 LTR MaLR -3 371 208 4 1068 3786 197 37 84 chr6 63373594 63374541 -86142496 + RMER19B LTR ERVK 1 902 0 4 1068 721 230 42 32 chr6 63374541 63374593 -86142444 - ORR1D1 LTR MaLR -167 207 155 4 1068 247 246 0 0 chr6 63374593 63374650 -86142387 + (CAGAGA)n Simple_repeat Simple_repeat 6 62 0 4 1068 324 260 29 48 chr6 63374654 63374759 -86142278 - ORR1D1 LTR MaLR -187 197 95 4 1068 1216 243 81 48 chr6 63374769 63375127 -86141910 - ORR1C2 LTR MaLR -14 370 1 4 1068 6201 147 31 46 chr6 63376052 63376468 -86140569 + L1_Mus4 LINE L1 5285 5711 -172 4 1068 228 35 0 0 chr6 63376468 63376497 -86140540 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1068 6201 103 55 33 chr6 63376497 63376573 -86140464 + L1_Mus4 LINE L1 5712 5781 -855 4 1068 1045 90 0 0 chr6 63376573 63376707 -86140330 + B1_Mm SINE Alu 3 136 -11 4 1068 6201 103 55 33 chr6 63376707 63377566 -86139471 + L1_Mus4 LINE L1 5782 6636 0 4 1068 21 36 0 0 chr6 63378113 63378141 -86138896 + AT_rich Low_complexity Low_complexity 1 28 0 4 1068 367 348 78 0 chr6 63378299 63378440 -86138597 - RSINE1 SINE B4 0 165 14 4 1068 180 0 0 0 chr6 63378560 63378580 -86138457 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 4 1068 495 45 0 0 chr6 63378584 63378650 -86138387 + (TTAG)n Simple_repeat Simple_repeat 3 68 0 4 1068 949 78 0 72 chr6 63378650 63378802 -86138235 - B1_Mus2 SINE Alu -7 141 1 4 1068 281 348 37 83 chr6 63379321 63379397 -86137640 + ID_B1 SINE B4 19 224 0 4 1068 327 381 14 7 chr6 63379397 63379537 -86137500 + B1F SINE Alu 9 149 0 4 1068 360 327 0 36 chr6 63379584 63379695 -86137342 + B3A SINE B2 1 107 -91 4 1068 721 329 54 50 chr6 63380250 63380593 -86136444 + Lx9 LINE L1 6956 7294 -350 4 1068 1215 46 0 44 chr6 63380593 63380776 -86136261 - L1Md_F3 LINE L1 0 6584 6410 5 1068 721 329 54 50 chr6 63380776 63380896 -86136141 + Lx9 LINE L1 7295 7421 -223 4 1068 360 0 0 0 chr6 63380928 63380968 -86136069 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1068 858 277 63 42 chr6 63380968 63381303 -86135734 - RMER15 LTR ERVL -44 531 190 5 1068 324 0 0 0 chr6 63381713 63381749 -86135288 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1068 414 0 0 0 chr6 63381751 63381797 -86135240 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1068 24 32 0 0 chr6 63383366 63383397 -86133640 + AT_rich Low_complexity Low_complexity 1 31 0 5 1068 896 72 0 8 chr6 63384469 63384595 -86132442 + (TTC)n Simple_repeat Simple_repeat 1 125 0 5 1068 368 75 0 19 chr6 63384599 63384653 -86132384 - B2_Mm2 SINE B2 -21 174 122 5 1068 319 330 20 0 chr6 63386475 63386575 -86130462 - PB1D10 SINE Alu -13 104 3 5 1068 355 325 48 34 chr6 63387343 63387550 -86129487 + L1MB2 LINE L1 5919 6128 -43 5 1068 25 31 0 0 chr6 63387569 63387601 -86129436 + AT_rich Low_complexity Low_complexity 1 32 0 5 1068 1369 340 57 25 chr6 63388194 63388963 -86128074 - Lx8 LINE L1 -253 7220 6427 5 1068 1395 298 52 34 chr6 63389220 63389776 -86127261 + RLTR20A2 LTR ERVK 1 566 -12 5 1068 406 327 92 23 chr6 63389834 63390138 -86126899 - Lx8 LINE L1 -1371 6102 5778 5 1068 807 266 123 9 chr6 63390197 63390425 -86126612 - RMER1B Other Other -811 255 2 5 1068 211 321 18 36 chr6 63390527 63390695 -86126342 + (CATATA)n Simple_repeat Simple_repeat 2 166 0 5 1068 860 314 48 40 chr6 63390713 63391088 -86125949 + MTE2b-int LTR MaLR 1200 1577 -3 5 1068 609 326 60 22 chr6 63391087 63391319 -86125718 + MTE2b LTR MaLR 2 242 -137 5 1068 743 201 0 0 chr6 63391604 63391738 -86125299 + B1_Mur4 SINE Alu 11 144 -6 5 1068 383 329 13 0 chr6 63391806 63391955 -86125082 + GA-rich Low_complexity Low_complexity 3 153 0 5 1068 2178 104 8 63 chr6 63392126 63392504 -86124533 + L1_Mus2 LINE L1 6210 6566 0 5 1068 602 82 10 0 chr6 63393209 63393307 -86123730 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 5 1068 477 270 47 16 chr6 63393512 63393640 -86123397 + B4A SINE B4 161 292 0 5 1068 22 0 0 0 chr6 63395015 63395037 -86122000 + AT_rich Low_complexity Low_complexity 1 22 0 5 1068 622 332 64 0 chr6 63395227 63395429 -86121608 + ID_B1 SINE B4 1 215 -9 5 1068 204 200 0 0 chr6 63396837 63396882 -86120155 + CT-rich Low_complexity Low_complexity 2 46 0 5 1068 221 367 24 55 chr6 63396949 63397076 -86119961 - ID_B1 SINE B4 -51 173 51 5 1068 2272 245 25 77 chr6 63397952 63398605 -86118432 - RMER20B LTR ERVK -2 625 7 5 1068 2085 87 111 36 chr6 63399064 63399423 -86117614 - L1Md_F2 LINE L1 -11 6571 6186 5 1068 349 214 57 0 chr6 63399821 63399961 -86117076 - Lx9 LINE L1 -4 7640 7493 5 1068 214 111 74 0 chr6 63400003 63400057 -86116980 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 1068 1955 284 107 29 chr6 63400061 63400929 -86116108 - Lx9 LINE L1 -129 7515 6580 5 1068 444 255 39 27 chr6 63401076 63401248 -86115789 + Lx9 LINE L1 5793 5965 -1679 5 1068 21 36 0 0 chr6 63401447 63401475 -86115562 + AT_rich Low_complexity Low_complexity 1 28 0 5 1068 294 115 0 0 chr6 63401481 63401533 -86115504 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1068 294 259 12 12 chr6 63401776 63401858 -86115179 + GA-rich Low_complexity Low_complexity 1 82 0 5 1068 197 266 274 11 chr6 63402643 63402738 -86114299 - MIRb SINE MIR -78 190 71 5 1068 529 120 10 20 chr6 63403232 63403334 -86113703 + RMER17A2 LTR ERVK 413 513 -393 5 1068 3880 39 0 0 chr6 63403341 63403854 -86113183 + L1Md_T LINE L1 6119 6582 0 5 1068 214 152 43 0 chr6 63404111 63404157 -86112880 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 5 1068 4702 195 51 9 chr6 63404165 63405139 -86111898 + Lx3C LINE L1 5960 6974 -2 5 1068 240 308 119 8 chr6 63407356 63407474 -86109563 - B1F1 SINE Alu -1 148 18 5 1068 31 0 0 0 chr6 63407613 63407644 -86109393 + AT_rich Low_complexity Low_complexity 1 31 0 5 1068 4111 140 66 1 chr6 63408768 63409448 -86107589 - Lx2 LINE L1 -466 6531 5808 5 1068 893 144 0 0 chr6 63409448 63409580 -86107457 + Lx2 LINE L1 6512 6643 -354 5 1068 1348 122 4 35 chr6 63409580 63409810 -86107227 + Lx2 LINE L1 6775 6997 0 5 1068 1030 60 0 0 chr6 63409866 63410000 -86107037 + B1_Mus1 SINE Alu 10 143 -5 5 1068 664 150 16 0 chr6 63410001 63410128 -86106909 + GA-rich Low_complexity Low_complexity 2 130 0 5 1068 528 16 0 0 chr6 63410128 63410189 -86106848 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 5 1068 1134 249 18 15 chr6 63410196 63410469 -86106568 - Lx9 LINE L1 -740 6904 6631 5 1068 1434 45 0 0 chr6 63410606 63410784 -86106253 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 5 1068 1099 69 6 6 chr6 63410784 63410940 -86106097 + (TTC)n Simple_repeat Simple_repeat 2 157 0 5 1068 639 164 11 38 chr6 63410910 63411094 -86105943 + CT-rich Low_complexity Low_complexity 2 180 0 5 1068 2804 256 78 3 chr6 63411119 63411786 -86105251 - Lx6 LINE L1 -3 7457 6741 5 1068 783 102 14 7 chr6 63411813 63411951 -86105086 - Lx3A LINE L1 -5 6976 6838 5 1068 366 176 143 0 chr6 63411952 63412043 -86104994 + RMER6D LTR ERVK 380 483 -237 5 1068 429 109 0 0 chr6 63412097 63412161 -86104876 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 1068 702 0 0 0 chr6 63412192 63412270 -86104767 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 5 1068 994 266 17 0 chr6 63412270 63412507 -86104530 + RMER6D LTR ERVK 476 716 -4 5 1068 2440 264 14 3 chr6 63412511 63413088 -86103949 - Lx6 LINE L1 -750 6710 6128 5 1068 4392 121 49 82 chr6 63413102 63413520 -86103517 - RMER17A2 LTR ERVK -11 895 504 5 1068 1175 67 6 0 chr6 63413520 63413684 -86103353 - L1_Mus2 LINE L1 0 6566 6402 5 1068 4392 121 49 82 chr6 63413684 63413891 -86103146 - RMER17A2 LTR ERVK -403 503 310 5 1068 279 0 0 0 chr6 63413891 63413922 -86103115 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 5 1068 4392 121 49 82 chr6 63413922 63414221 -86102816 - RMER17A2 LTR ERVK -597 309 1 5 1068 1745 238 34 14 chr6 63414235 63414841 -86102196 - Lx6 LINE L1 -1347 6113 5485 5 1068 651 343 36 28 chr6 63414969 63415218 -86101819 - ORR1D2 LTR MaLR -119 251 1 5 1068 197 108 27 0 chr6 63417800 63417837 -86099200 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1068 233 212 47 0 chr6 63417837 63417922 -86099115 + (TCTA)n Simple_repeat Simple_repeat 1 89 0 5 1068 181 372 13 0 chr6 63418302 63418380 -86098657 - L2a LINE L2 -1 3425 3347 5 1068 513 359 64 11 chr6 63419138 63419344 -86097693 + B4 SINE B4 6 221 -71 5 1068 21 0 0 0 chr6 63419760 63419781 -86097256 + AT_rich Low_complexity Low_complexity 1 21 0 5 1068 405 380 80 28 chr6 63421067 63421394 -86095643 - MLT1F2 LTR MaLR -8 552 209 5 1068 31 26 0 0 chr6 63421670 63421708 -86095329 + AT_rich Low_complexity Low_complexity 1 38 0 5 1068 416 364 69 0 chr6 63422401 63422574 -86094463 - ID_B1 SINE B4 -31 193 9 5 1068 21 0 0 0 chr6 63422959 63422980 -86094057 + AT_rich Low_complexity Low_complexity 1 21 0 5 1068 29 28 0 0 chr6 63423387 63423423 -86093614 + AT_rich Low_complexity Low_complexity 1 36 0 5 1068 282 224 63 38 chr6 63423444 63423523 -86093514 - B1F SINE Alu -59 90 10 5 1068 849 222 37 162 chr6 63423526 63423908 -86093129 + Lx5 LINE L1 6717 7050 0 5 1068 789 326 166 12 chr6 63424102 63424590 -86092447 - MTE-int LTR MaLR -980 600 38 5 1068 604 294 103 38 chr6 63424813 63424943 -86092094 - MTEb LTR MaLR -65 314 181 5 1068 462 36 0 0 chr6 63424943 63424999 -86092038 + (TTTTC)n Simple_repeat Simple_repeat 4 59 0 5 1068 604 294 103 38 chr6 63424999 63425130 -86091907 - MTEb LTR MaLR -199 180 36 5 1068 495 27 41 0 chr6 63425338 63425411 -86091626 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1068 549 0 0 0 chr6 63425414 63425475 -86091562 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1068 24 32 0 0 chr6 63426203 63426234 -86090803 + AT_rich Low_complexity Low_complexity 1 31 0 5 1068 379 270 81 0 chr6 63428246 63428357 -86088680 - Lx8 LINE L1 -247 7226 7107 5 1068 201 167 0 0 chr6 63428454 63428490 -86088547 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 5 1068 2634 121 68 23 chr6 63428492 63428931 -86088106 - Lx3A LINE L1 -10 6971 6513 5 1068 43 76 0 0 chr6 63430149 63430241 -86086796 + AT_rich Low_complexity Low_complexity 1 92 0 5 1068 235 258 22 33 chr6 63430526 63430618 -86086419 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 5 1068 182 156 22 0 chr6 63430715 63430760 -86086277 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 5 1068 258 243 38 19 chr6 63430774 63430879 -86086158 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 5 1068 252 178 27 14 chr6 63430900 63430974 -86086063 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 5 1068 846 130 123 6 chr6 63431091 63431261 -86085776 - Lx3_Mus LINE L1 0 7009 6820 5 1068 691 92 0 0 chr6 63431257 63431355 -86085682 - Lx3A LINE L1 -1191 5790 5693 5 1068 352 97 32 0 chr6 63431466 63431528 -86085509 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1068 489 127 0 0 chr6 63433338 63433417 -86083620 + (TG)n Simple_repeat Simple_repeat 1 79 0 5 1068 371 191 25 50 chr6 63433589 63433710 -86083327 + Lx7 LINE L1 7579 7696 0 5 1068 30 27 0 0 chr6 63434060 63434097 -86082940 + AT_rich Low_complexity Low_complexity 1 37 0 5 1068 31 0 0 0 chr6 63434522 63434553 -86082484 + AT_rich Low_complexity Low_complexity 1 31 0 5 1068 1362 51 85 5 chr6 63434555 63434754 -86082283 - RLTR13D5 LTR ERVK -114 909 695 5 1068 1592 179 11 7 chr6 63435403 63435684 -86081353 + Lx4A LINE L1 6770 7051 -7 5 1068 306 0 0 0 chr6 63435684 63435718 -86081319 + (TAA)n Simple_repeat Simple_repeat 1 34 0 5 1068 548 320 40 11 chr6 63436338 63436515 -86080522 + ORR1D2 LTR MaLR 7 188 -182 5 1068 303 16 94 0 chr6 63436518 63436582 -86080455 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 5 1068 582 278 99 26 chr6 63436582 63436774 -86080263 + ORR1D2 LTR MaLR 165 370 0 5 1068 276 353 64 48 chr6 63436957 63437082 -86079955 - RSINE1 SINE B4 -36 129 3 5 1068 574 111 10 0 chr6 63437111 63437210 -86079827 - Lx LINE L1 -6 6648 6549 5 1068 6391 221 25 7 chr6 63437222 63438551 -86078486 - Lx5 LINE L1 -110 6940 5588 5 1069 249 329 0 12 chr6 63440812 63440898 -86076139 + MTE2b LTR MaLR 1 85 -294 5 1069 219 167 83 0 chr6 63440916 63440976 -86076061 + (TATAA)n Simple_repeat Simple_repeat 2 66 0 5 1069 3405 139 18 4 chr6 63441545 63442101 -86074936 + Lx3A LINE L1 6410 6973 -8 5 1069 530 234 117 0 chr6 63442262 63442467 -86074570 + Lx9 LINE L1 7376 7604 -40 5 1069 449 356 15 20 chr6 63442981 63443176 -86073861 - B3A SINE B2 -1 197 4 5 1069 194 0 39 0 chr6 63443200 63443226 -86073811 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 6 1069 21 36 0 0 chr6 63443380 63443408 -86073629 + AT_rich Low_complexity Low_complexity 1 28 0 6 1069 489 51 15 9 chr6 63443438 63443515 -86073522 - ORR1A3 LTR MaLR 0 374 262 6 1069 2407 138 56 13 chr6 63443522 63443984 -86073053 - RLTR21 LTR ERVK -477 1095 614 6 1069 1418 166 0 27 chr6 63443993 63444253 -86072784 - L1_Mus4 LINE L1 -5 6631 6379 6 1069 1673 109 0 0 chr6 63444253 63444492 -86072545 - ORR1A2 LTR MaLR -88 239 1 6 1069 6586 154 64 10 chr6 63444492 63445741 -86071296 - ORR1A2-int LTR MaLR 0 1963 647 6 1069 1066 184 98 39 chr6 63445543 63445797 -86071240 - MT2B2 LTR ERVL -315 269 1 6 1069 22 0 0 0 chr6 63446024 63446046 -86070991 + AT_rich Low_complexity Low_complexity 1 22 0 6 1069 8439 152 26 5 chr6 63446072 63447769 -86069268 + Lx2 LINE L1 5274 6996 -1 6 1069 1481 159 16 0 chr6 63447788 63448045 -86068992 - L1_Mur2 LINE L1 -51 5826 5566 6 1069 1151 233 48 14 chr6 63448055 63448347 -86068690 + Lx5 LINE L1 6741 7042 -8 6 1069 2352 96 10 175 chr6 63448366 63448870 -86068167 - L1_Mus1 LINE L1 -1 6566 6146 6 1069 23 68 0 0 chr6 63449188 63449232 -86067805 + AT_rich Low_complexity Low_complexity 1 44 0 6 1069 447 92 0 0 chr6 63449332 63449397 -86067640 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1069 30 45 0 0 chr6 63449498 63449542 -86067495 + AT_rich Low_complexity Low_complexity 1 44 0 6 1069 576 65 0 0 chr6 63449664 63449741 -86067296 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1069 24 0 0 0 chr6 63450792 63450816 -86066221 + AT_rich Low_complexity Low_complexity 1 24 0 6 1069 35 24 0 0 chr6 63451492 63451534 -86065503 + AT_rich Low_complexity Low_complexity 1 42 0 6 1069 181 362 10 31 chr6 63452540 63452637 -86064400 - MIR SINE MIR -162 100 6 6 1069 564 362 43 8 chr6 63454159 63454415 -86062622 + MLT1A0 LTR MaLR 23 287 -78 6 1069 27 62 0 0 chr6 63454849 63454897 -86062140 + AT_rich Low_complexity Low_complexity 1 48 0 6 1069 22 0 0 0 chr6 63455780 63455802 -86061235 + AT_rich Low_complexity Low_complexity 1 22 0 6 1069 204 125 0 0 chr6 63455903 63455935 -86061102 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1069 273 89 0 0 chr6 63455935 63455980 -86061057 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1069 27 62 0 0 chr6 63456068 63456116 -86060921 + AT_rich Low_complexity Low_complexity 1 48 0 6 1069 821 206 18 0 chr6 63456618 63456783 -86060254 - ORR1B2 LTR MaLR -52 315 148 6 1069 25 51 0 0 chr6 63456960 63456999 -86060038 + AT_rich Low_complexity Low_complexity 1 39 0 6 1069 189 0 0 0 chr6 63457368 63457389 -86059648 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1069 238 256 22 11 chr6 63458682 63458773 -86058264 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 1069 342 129 0 0 chr6 63459762 63459824 -86057213 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1069 545 238 46 33 chr6 63460448 63460600 -86056437 + Lx5 LINE L1 6897 7050 0 6 1069 195 42 0 0 chr6 63461047 63461071 -86055966 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 1069 207 0 0 0 chr6 63461139 63461162 -86055875 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 6 1069 4931 230 43 37 chr6 63461857 63463870 -86053167 - Lx7 LINE L1 -665 7031 5011 6 1069 23 0 0 0 chr6 63464920 63464943 -86052094 + AT_rich Low_complexity Low_complexity 1 23 0 6 1069 208 283 109 20 chr6 63466226 63466327 -86050710 - MIR SINE MIR -55 207 98 6 1069 195 42 0 0 chr6 63466329 63466353 -86050684 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1069 190 261 66 33 chr6 63466786 63466877 -86050160 + L3 LINE CR1 2809 2902 -1587 6 1069 346 195 37 89 chr6 63467501 63467636 -86049401 - Lx9 LINE L1 -8 7636 7509 6 1069 191 395 104 0 chr6 63467706 63467840 -86049197 + MIR SINE MIR 31 178 -84 6 1069 411 309 14 35 chr6 63467979 63468123 -86048914 + B1F SINE Alu 6 146 -3 6 1069 329 200 183 0 chr6 63469018 63469133 -86047904 + Lx9 LINE L1 7508 7643 -1 6 1069 28 0 0 0 chr6 63469669 63469697 -86047340 + AT_rich Low_complexity Low_complexity 1 28 0 6 1069 1592 184 24 30 chr6 63469697 63470027 -86047010 + ORR1A4 LTR MaLR 1 328 -1 6 1069 1091 162 353 13 chr6 63470153 63470462 -86046575 + RLTR17 LTR ERVK 279 692 0 6 1069 626 141 74 8 chr6 63470462 63470582 -86046455 + RMER16 LTR ERVK 202 329 -204 6 1069 1173 7 0 0 chr6 63470586 63470750 -86046287 + L1Md_T LINE L1 6440 6582 0 6 1069 261 0 0 0 chr6 63470926 63470955 -86046082 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1069 848 178 45 17 chr6 63470955 63471132 -86045905 + RMER16 LTR ERVK 352 533 0 6 1069 1118 125 78 14 chr6 63471132 63471351 -86045686 - RLTR11B LTR ERVK -51 402 170 6 1069 3852 277 49 13 chr6 63471691 63472762 -86044275 - Lx5 LINE L1 -16 7034 5926 6 1069 5825 224 66 85 chr6 63472895 63473468 -86043569 + L1_Mur3 LINE L1 904 1483 -4394 6 1069 2504 108 23 3 chr6 63473468 63473859 -86043178 + L1_Mus3 LINE L1 6236 6634 -4 6 1069 5825 198 75 131 chr6 63473859 63473884 -86043153 + L1_Mur3 LINE L1 1484 1508 -4369 6 1069 4146 175 34 15 chr6 63473884 63474669 -86042368 + Lx2B LINE L1 6182 6981 -19 6 1069 5825 198 75 131 chr6 63474669 63474873 -86042164 + L1_Mur3 LINE L1 1509 1594 -4283 6 1069 1663 96 34 0 chr6 63474873 63475112 -86041925 + L1_Mus1 LINE L1 6319 6565 -2 6 1069 5825 198 75 131 chr6 63475112 63476717 -86040320 + L1_Mur3 LINE L1 1595 3201 -2676 6 1069 1434 254 45 99 chr6 63476717 63477360 -86039677 - RMER19C LTR ERVK 0 611 4 6 1069 5825 198 75 131 chr6 63477360 63477484 -86039553 + L1_Mur3 LINE L1 3202 3318 -2559 6 1069 533 291 24 0 chr6 63478274 63478401 -86038636 - B3 SINE B2 -86 130 1 6 1069 278 137 0 0 chr6 63478457 63478508 -86038529 + B1_Mur4 SINE Alu 3 53 -97 6 1069 195 42 0 0 chr6 63478534 63478558 -86038479 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1069 21 0 0 0 chr6 63478827 63478848 -86038189 + AT_rich Low_complexity Low_complexity 1 21 0 6 1069 433 221 43 22 chr6 63479537 63479676 -86037361 - L1_Mur3 LINE L1 -2498 3382 3241 6 1069 622 144 75 7 chr6 63479685 63479832 -86037205 - Lx2B LINE L1 0 7000 6844 6 1069 1170 102 12 0 chr6 63479835 63480001 -86037036 + Lx2B LINE L1 6223 6390 -610 6 1069 537 126 0 0 chr6 63480004 63480115 -86036922 + (CATA)n Simple_repeat Simple_repeat 2 112 0 6 1069 2133 170 94 10 chr6 63480115 63480508 -86036529 + Lx2B LINE L1 6393 6818 -182 6 1069 368 258 7 19 chr6 63480518 63480672 -86036365 - L1_Mur3 LINE L1 -2657 3223 3072 6 1069 274 91 18 18 chr6 63483316 63483372 -86033665 + (CAAA)n Simple_repeat Simple_repeat 3 58 0 6 1069 356 68 13 40 chr6 63483744 63483820 -86033217 + (TTTG)n Simple_repeat Simple_repeat 1 74 0 6 1069 565 326 6 0 chr6 63484138 63484319 -86032718 - Lx6 LINE L1 -11 7449 7268 6 1069 506 338 3 17 chr6 63484715 63484907 -86032130 - B4A SINE B4 -1 291 97 6 1069 405 0 0 0 chr6 63484962 63485007 -86032030 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1069 2791 99 0 10 chr6 63485230 63485628 -86031409 + MTA_Mm LTR MaLR 3 396 0 6 1069 25 0 0 0 chr6 63485710 63485735 -86031302 + AT_rich Low_complexity Low_complexity 1 25 0 6 1069 309 26 0 0 chr6 63485753 63485791 -86031246 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1069 512 264 7 53 chr6 63486204 63486356 -86030681 + B1_Mur2 SINE Alu 5 149 0 6 1069 297 0 0 0 chr6 63486376 63486409 -86030628 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1069 53 17 0 0 chr6 63486648 63486708 -86030329 + AT_rich Low_complexity Low_complexity 1 60 0 6 1069 672 86 0 0 chr6 63486796 63486901 -86030136 + (TC)n Simple_repeat Simple_repeat 2 106 0 6 1069 510 280 37 5 chr6 63486912 63487099 -86029938 - Lx9 LINE L1 -201 7443 7251 6 1069 24 32 0 0 chr6 63489494 63489525 -86027512 + AT_rich Low_complexity Low_complexity 1 31 0 6 1069 5028 111 3 8 chr6 63489632 63490377 -86026660 - L1_Mus4 LINE L1 -11 6625 5885 6 1069 3889 169 21 26 chr6 63490377 63491135 -86025902 + L1_Mus4 LINE L1 5124 5877 -6 6 1069 200 178 0 82 chr6 63492669 63492718 -86024319 + A-rich Low_complexity Low_complexity 1 45 0 6 1069 956 96 7 0 chr6 63492846 63492981 -86024056 - B1_Mm SINE Alu -1 146 11 6 1069 370 260 122 0 chr6 63492999 63493122 -86023915 - MLT2B1 LTR ERVL -382 138 1 6 1069 595 311 112 36 chr6 63493473 63494271 -86022766 - ERVL-int LTR ERVL -420 5337 4537 6 1069 2752 44 0 12 chr6 63494278 63494624 -86022413 - L1Md_F3 LINE L1 -9 6575 6234 6 1069 384 324 46 39 chr6 63494746 63495006 -86022031 - ERVL-int LTR ERVL -2078 3636 3375 6 1069 348 24 0 0 chr6 63495300 63495341 -86021696 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1069 213 154 0 0 chr6 63495341 63495380 -86021657 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 6 1069 314 123 18 0 chr6 63495973 63496030 -86021007 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 6 1069 207 0 0 0 chr6 63496729 63496752 -86020285 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1069 539 312 78 58 chr6 63496970 63497606 -86019431 - L1MA9 LINE L1 -61 6230 5579 6 1069 900 267 91 16 chr6 63497841 63498202 -86018835 + MTD LTR MaLR 33 419 0 6 1069 184 286 28 28 chr6 63498943 63499015 -86018022 - L3 LINE CR1 -3497 992 921 6 1069 3587 87 0 2 chr6 63499475 63499961 -86017076 - L1_Mus2 LINE L1 -1 6565 6081 6 1069 252 0 0 0 chr6 63501314 63501342 -86015695 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1069 477 0 0 0 chr6 63501556 63501609 -86015428 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1069 288 0 0 0 chr6 63502152 63502184 -86014853 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1069 744 184 13 45 chr6 63503000 63503154 -86013883 + B1_Mur4 SINE Alu 2 150 0 4 1069 768 22 0 0 chr6 63503224 63503314 -86013723 + (GAAAA)n Simple_repeat Simple_repeat 2 91 0 5 1069 227 264 0 0 chr6 63503527 63503580 -86013457 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1069 425 103 15 0 chr6 63503689 63503757 -86013280 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 1069 498 253 147 119 chr6 63504967 63505218 -86011819 + B4A SINE B4 2 259 -33 8 1069 609 40 0 0 chr6 63505229 63505305 -86011732 + (CA)n Simple_repeat Simple_repeat 1 76 0 9 1069 491 315 89 0 chr6 63505344 63505490 -86011547 - B3A SINE B2 -26 172 14 1 1069 810 288 55 28 chr6 63505729 63506133 -86010904 - Lx7 LINE L1 -1564 5909 5455 1 1069 504 45 0 0 chr6 63506242 63506309 -86010728 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1069 306 0 0 0 chr6 63506309 63506342 -86010695 + (TTAG)n Simple_repeat Simple_repeat 2 35 0 1 1069 742 340 142 6 chr6 63506394 63506992 -86010045 + Lx8 LINE L1 6221 6894 -579 1 1069 28 35 0 49 chr6 63507326 63507387 -86009650 + AT_rich Low_complexity Low_complexity 1 58 0 1 1069 1484 101 14 0 chr6 63507410 63507627 -86009410 + L1_Mus1 LINE L1 6347 6566 -1 1 1069 21 0 0 0 chr6 63507727 63507748 -86009289 + AT_rich Low_complexity Low_complexity 1 21 0 1 1069 5356 88 23 1 chr6 63508388 63509169 -86007868 + Lx3_Mus LINE L1 6209 7006 -3 1 1069 23 33 0 0 chr6 63509169 63509199 -86007838 + AT_rich Low_complexity Low_complexity 1 30 0 1 1069 198 103 0 0 chr6 63509432 63509461 -86007576 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 2 1069 247 314 79 31 chr6 63509624 63509819 -86007218 - Lx8 LINE L1 -457 7016 6818 2 1069 340 340 0 61 chr6 63509982 63510129 -86006908 - Lx8 LINE L1 -869 6604 6467 2 1069 22 94 0 0 chr6 63510189 63510253 -86006784 + AT_rich Low_complexity Low_complexity 1 64 0 2 1069 3072 70 12 0 chr6 63510263 63510666 -86006371 - L1_Mus2 LINE L1 0 6566 6159 2 1069 1868 83 4 14 chr6 63510666 63510946 -86006091 + L1_Mm LINE L1 5177 5453 -430 2 1069 499 293 16 0 chr6 63510985 63511108 -86005929 - B1_Mur1 SINE Alu 0 149 25 2 1069 519 259 117 7 chr6 63511131 63511430 -86005607 - L1M4c LINE L1 -4123 2261 1930 2 1069 22 0 0 0 chr6 63513006 63513028 -86004009 + AT_rich Low_complexity Low_complexity 1 22 0 2 1069 2721 129 4 33 chr6 63513667 63514123 -86002914 + Lx LINE L1 6211 6653 -1 2 1069 269 77 19 0 chr6 63515570 63515622 -86001415 + L1Md_F2 LINE L1 6528 6580 -2 2 1069 27 0 0 0 chr6 63515740 63515767 -86001270 + AT_rich Low_complexity Low_complexity 1 27 0 3 1069 1057 8 0 0 chr6 63515771 63515903 -86001134 - L1Md_T LINE L1 0 6582 6451 3 1069 207 69 0 0 chr6 63515951 63515980 -86001057 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1069 531 31 0 0 chr6 63516293 63516358 -86000679 + (TC)n Simple_repeat Simple_repeat 1 65 0 3 1069 308 383 35 0 chr6 63516454 63516569 -86000468 - RSINE1 SINE B4 -22 143 25 3 1069 955 128 7 0 chr6 63516645 63516786 -86000251 + B1_Mm SINE Alu 5 146 -1 3 1069 183 80 0 0 chr6 63517017 63517042 -85999995 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 3 1069 922 276 48 3 chr6 63518090 63518403 -85998634 - Lx7 LINE L1 -1 7695 7369 3 1069 1928 147 88 16 chr6 63518715 63519089 -85997948 - RLTR9D LTR ERVK -1 402 2 3 1069 1141 68 0 14 chr6 63519255 63519403 -85997634 - B1_Mus1 SINE Alu -1 147 2 3 1069 26 30 0 0 chr6 63520945 63520978 -85996059 + AT_rich Low_complexity Low_complexity 1 33 0 4 1069 207 69 0 0 chr6 63521196 63521225 -85995812 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1069 21 0 0 0 chr6 63523808 63523829 -85993208 + AT_rich Low_complexity Low_complexity 1 21 0 4 1069 257 89 22 0 chr6 63523876 63523921 -85993116 + (TTTAA)n Simple_repeat Simple_repeat 5 50 0 4 1069 434 292 241 7 chr6 63524258 63524544 -85992493 + MTEb LTR MaLR 1 353 -26 4 1069 234 0 0 0 chr6 63524698 63524724 -85992313 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 1069 405 95 0 0 chr6 63525026 63525089 -85991948 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1069 572 352 36 88 chr6 63525097 63525371 -85991666 - B4 SINE B4 -15 277 18 4 1069 380 348 29 0 chr6 63526149 63526422 -85990615 - L1M2 LINE L1 -1252 4891 4611 4 1069 32 43 0 0 chr6 63526422 63526468 -85990569 + AT_rich Low_complexity Low_complexity 1 46 0 4 1069 7938 132 25 62 chr6 63527896 63528824 -85988213 - Lx3A LINE L1 -7 6974 6044 5 1069 180 0 0 0 chr6 63528824 63528844 -85988193 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 5 1069 7938 143 18 70 chr6 63528844 63529815 -85987222 - Lx3A LINE L1 -938 6043 5126 5 1069 33521 7 86 1 chr6 63529863 63536303 -85980734 - L1Md_A LINE L1 0 6582 1 5 1069 1132 112 0 0 chr6 63536304 63536473 -85980564 - L1_Mm LINE L1 -746 5137 4969 5 1069 4102 127 15 11 chr6 63536473 63537132 -85979905 + L1_Mus4 LINE L1 5974 6635 -1 5 1069 291 114 0 0 chr6 63537219 63537263 -85979774 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1069 850 310 71 33 chr6 63537263 63538355 -85978682 + Lx8 LINE L1 4447 5617 -683 5 1069 254 252 144 39 chr6 63538366 63538466 -85978571 + Lx8 LINE L1 5639 5753 -1720 5 1069 279 0 0 0 chr6 63538466 63538497 -85978540 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1069 254 273 75 23 chr6 63538497 63538611 -85978426 + Lx8 LINE L1 5726 5837 -10 5 1069 2230 154 2 32 chr6 63538708 63539111 -85977926 + Lx2 LINE L1 6606 6996 -1 5 1069 25 0 0 0 chr6 63539471 63539496 -85977541 + AT_rich Low_complexity Low_complexity 1 25 0 5 1069 1068 96 7 0 chr6 63541405 63541551 -85975486 - B1_Mus2 SINE Alu 0 147 1 6 1069 392 330 142 21 chr6 63541711 63542092 -85974945 - Lx9 LINE L1 -145 7499 7073 6 1069 5279 141 35 17 chr6 63542995 63543811 -85973226 + Lx3C LINE L1 6040 6863 -113 6 1069 2870 38 3 0 chr6 63543811 63544156 -85972881 - ORR1A0 LTR MaLR 0 346 1 6 1069 5279 141 35 17 chr6 63544156 63544257 -85972780 + Lx3C LINE L1 6864 6972 -4 6 1069 24 32 0 0 chr6 63544643 63544674 -85972363 + AT_rich Low_complexity Low_complexity 1 31 0 6 1069 516 59 35 0 chr6 63544811 63544896 -85972141 + (TA)n Simple_repeat Simple_repeat 2 89 0 6 1069 3519 70 4 0 chr6 63544916 63545375 -85971662 - L1_Mus1 LINE L1 -2 6565 6105 6 1069 270 81 0 0 chr6 63546015 63546052 -85970985 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1069 21 71 0 0 chr6 63546235 63546277 -85970760 + AT_rich Low_complexity Low_complexity 1 42 0 6 1069 1611 216 64 10 chr6 63546478 63546867 -85970170 + Lx3C LINE L1 6565 6974 -2 6 1069 275 150 95 13 chr6 63547340 63547435 -85969602 + Lx2B LINE L1 6894 6994 -3 7 1069 369 0 0 0 chr6 63547438 63547479 -85969558 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 1069 702 291 22 14 chr6 63547482 63547665 -85969372 + ORR1D2 LTR MaLR 140 319 -51 7 1069 833 67 17 0 chr6 63547665 63547785 -85969252 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 7 1069 316 340 24 101 chr6 63547785 63547819 -85969218 + ORR1D2 LTR MaLR 317 351 -8 7 1069 754 238 140 0 chr6 63548021 63548185 -85968852 - Lx2B LINE L1 -164 6836 6650 7 1069 275 316 0 71 chr6 63549309 63549394 -85967643 - RSINE1 SINE B4 0 165 87 7 1069 214 346 23 30 chr6 63550769 63550900 -85966137 + L3 LINE CR1 2244 2373 -2116 7 1069 545 319 0 14 chr6 63552274 63552414 -85964623 + RSINE1 SINE B4 28 165 0 7 1069 545 127 0 0 chr6 63552772 63552851 -85964186 + BC1_Mm scRNA scRNA 2 80 -72 7 1069 246 95 0 0 chr6 63553372 63553414 -85963623 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 7 1069 611 285 20 18 chr6 63554583 63554746 -85962291 - B3 SINE B2 -29 187 32 8 1069 192 316 0 17 chr6 63555014 63555072 -85961965 + L2 LINE L2 2903 2959 -460 8 1069 441 0 0 0 chr6 63555200 63555249 -85961788 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1069 270 73 0 0 chr6 63555390 63555431 -85961606 + (T)n Simple_repeat Simple_repeat 1 41 0 8 1069 1030 322 174 8 chr6 63555685 63556294 -85960743 - Lx8 LINE L1 -2 7471 6762 8 1069 291 321 28 28 chr6 63556308 63556452 -85960585 - Lx8 LINE L1 -756 6717 6574 8 1069 663 296 32 26 chr6 63556722 63556933 -85960104 - B3A SINE B2 0 216 1 8 1069 239 327 55 3 chr6 63557208 63557373 -85959664 - L1M2 LINE L1 -434 5857 5687 8 1069 271 193 57 57 chr6 63557463 63557551 -85959486 - L1_Rod LINE L1 -637 5210 5123 8 1069 23 33 0 0 chr6 63560674 63560704 -85956333 + AT_rich Low_complexity Low_complexity 1 30 0 8 1069 23 33 0 0 chr6 63562029 63562059 -85954978 + AT_rich Low_complexity Low_complexity 1 30 0 8 1069 1811 275 13 4 chr6 63563468 63563939 -85953098 - Lx5 LINE L1 0 7050 6576 9 1069 4142 52 4 4 chr6 63564455 63564981 -85952056 - L1Md_F2 LINE L1 -2 6580 6055 9 1069 29 70 0 0 chr6 63566319 63566376 -85950661 + AT_rich Low_complexity Low_complexity 1 57 0 9 1069 2430 271 24 3 chr6 63567078 63567712 -85949325 + Lx2B LINE L1 6353 6999 -1 9 1069 240 35 0 0 chr6 63567736 63567765 -85949272 + (GA)n Simple_repeat Simple_repeat 2 30 0 9 1069 540 0 0 0 chr6 63567765 63567825 -85949212 + (GGAA)n Simple_repeat Simple_repeat 2 61 0 9 1069 4876 45 2 8 chr6 63567889 63568493 -85948544 - L1Md_F3 LINE L1 -287 6297 5698 9 1069 933 72 0 0 chr6 63568493 63568618 -85948419 + B1_Mus1 SINE Alu 24 148 0 9 1069 576 0 0 0 chr6 63568651 63568715 -85948322 + (GA)n Simple_repeat Simple_repeat 1 64 0 9 1069 209 175 18 0 chr6 63568992 63569035 -85948002 + T-rich Low_complexity Low_complexity 17 60 0 9 1069 1290 80 0 0 chr6 63569035 63569211 -85947826 + (TTTCC)n Simple_repeat Simple_repeat 1 176 0 1 1069 209 175 18 0 chr6 63569211 63569224 -85947813 + T-rich Low_complexity Low_complexity 4 16 0 1 1070 3938 207 137 21 chr6 63570774 63572068 -85944969 + Lx6 LINE L1 4753 6167 -1293 1 1070 5493 150 54 14 chr6 63572084 63573059 -85943978 - L1_Mus4 LINE L1 -6 6630 5617 1 1070 2018 284 19 35 chr6 63573060 63573680 -85943357 + Lx6 LINE L1 6184 6793 -667 1 1070 1149 283 67 6 chr6 63573708 63574049 -85942988 + Lx6 LINE L1 7099 7460 0 1 1070 353 378 0 0 chr6 63575232 63575351 -85941686 + RSINE1 SINE B4 11 129 -36 1 1070 612 91 0 0 chr6 63575362 63575450 -85941587 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1070 932 336 21 3 chr6 63577783 63578067 -85938970 - B4A SINE B4 -3 289 1 1 1070 1519 216 95 62 chr6 63578231 63578651 -85938386 + Lx5 LINE L1 6617 7050 0 1 1070 1331 201 66 23 chr6 63578660 63578961 -85938076 - MTC LTR MaLR -106 315 2 1 1070 27 73 0 0 chr6 63581826 63581881 -85935156 + AT_rich Low_complexity Low_complexity 1 55 0 1 1070 399 145 0 0 chr6 63581928 63581997 -85935040 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1070 25 0 0 0 chr6 63583012 63583037 -85934000 + AT_rich Low_complexity Low_complexity 1 25 0 1 1070 7639 71 10 0 chr6 63583072 63584146 -85932891 + L1_Mus1 LINE L1 5485 6567 0 1 1070 204 67 0 0 chr6 63584872 63584902 -85932135 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 1070 282 56 0 0 chr6 63585663 63585699 -85931338 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1070 890 91 52 0 chr6 63586035 63586189 -85930848 + Lx3_Mus LINE L1 6832 6993 -16 1 1070 189 0 0 0 chr6 63586189 63586210 -85930827 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 1 1070 1825 47 25 0 chr6 63586551 63586787 -85930250 - L1Md_F3 LINE L1 0 6584 6343 1 1070 1241 14 0 0 chr6 63586787 63586930 -85930107 + L1Md_F3 LINE L1 5738 5880 -704 1 1070 317 299 0 25 chr6 63587158 63587237 -85929800 + B3A SINE B2 45 121 -77 1 1070 362 250 0 7 chr6 63587237 63587390 -85929647 + (TG)n Simple_repeat Simple_repeat 1 152 0 1 1070 527 174 18 0 chr6 63587399 63587508 -85929529 + GA-rich Low_complexity Low_complexity 5 115 0 1 1070 3279 143 22 56 chr6 63588232 63588826 -85928211 - Lx LINE L1 0 6654 6081 1 1070 952 266 149 75 chr6 63590335 63590750 -85926287 - Lx6 LINE L1 -26 7434 6989 1 1070 22 0 0 0 chr6 63591168 63591190 -85925847 + AT_rich Low_complexity Low_complexity 1 22 0 1 1070 1395 237 53 0 chr6 63592337 63592658 -85924379 - Lx6 LINE L1 -10 7450 7113 1 1070 713 205 8 0 chr6 63592694 63592821 -85924216 - B1_Mur3 SINE Alu -21 128 1 1 1070 325 228 0 31 chr6 63593193 63593320 -85923717 + (TATG)n Simple_repeat Simple_repeat 2 124 0 1 1070 225 213 104 24 chr6 63593816 63593941 -85923096 - L1MA5A LINE L1 -298 5999 5865 1 1070 312 192 78 31 chr6 63593982 63594111 -85922926 - Lx9 LINE L1 -1 7643 7509 1 1070 268 263 83 32 chr6 63594123 63594280 -85922757 - L1MA5A LINE L1 -476 5815 5651 1 1070 235 286 79 24 chr6 63594280 63594445 -85922592 - L1MA5A LINE L1 -850 5462 5289 1 1070 2323 198 166 39 chr6 63594448 63595060 -85921977 - RMER6C LTR ERVK 0 690 1 1 1070 266 0 0 29 chr6 63595099 63595134 -85921903 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1070 477 345 4 35 chr6 63595485 63595713 -85921324 + Lx7 LINE L1 5596 5816 -1880 1 1070 251 0 0 56 chr6 63596525 63596561 -85920476 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1070 21 36 0 0 chr6 63596793 63596821 -85920216 + AT_rich Low_complexity Low_complexity 1 28 0 1 1070 638 86 60 0 chr6 63596823 63596939 -85920098 - L1_Mus3 LINE L1 -1 6637 6515 1 1070 21 36 0 0 chr6 63597029 63597057 -85919980 + AT_rich Low_complexity Low_complexity 1 28 0 1 1070 21 36 0 0 chr6 63597330 63597358 -85919679 + AT_rich Low_complexity Low_complexity 1 28 0 1 1070 3289 85 52 0 chr6 63597361 63597820 -85919217 - L1_Mus1 LINE L1 0 6567 6085 1 1070 1289 51 0 0 chr6 63597822 63597979 -85919058 + L1_Mm LINE L1 5404 5560 -323 1 1070 266 303 7 193 chr6 63597985 63598120 -85918917 - RSINE1 SINE B4 -41 124 15 1 1070 201 39 0 0 chr6 63598190 63598216 -85918821 + (CAT)n Simple_repeat Simple_repeat 1 26 0 1 1070 428 0 19 0 chr6 63598891 63598943 -85918094 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1070 22 80 0 0 chr6 63599067 63599117 -85917920 + AT_rich Low_complexity Low_complexity 1 50 0 1 1070 24 53 0 0 chr6 63599760 63599798 -85917239 + AT_rich Low_complexity Low_complexity 1 38 0 1 1070 195 200 0 74 chr6 63600560 63600641 -85916396 + T-rich Low_complexity Low_complexity 1 75 0 1 1070 186 43 0 0 chr6 63600651 63600674 -85916363 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1070 964 105 21 7 chr6 63600674 63600808 -85916229 - B1_Mus1 SINE Alu -9 139 3 1 1070 224 0 65 0 chr6 63600811 63600842 -85916195 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1070 518 43 14 0 chr6 63600927 63600996 -85916041 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1 1070 192 77 0 0 chr6 63601081 63601107 -85915930 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1070 226 260 13 52 chr6 63601333 63601410 -85915627 + MIR3 SINE MIR 92 165 -43 1 1070 675 306 21 22 chr6 63602476 63602745 -85914292 + ORR1E LTR MaLR 3 275 -95 1 1070 21 71 0 0 chr6 63603677 63603719 -85913318 + AT_rich Low_complexity Low_complexity 1 42 0 1 1070 1618 308 120 19 chr6 63603751 63604036 -85913001 - Lx9 LINE L1 -73 7571 7237 1 1070 192 40 0 0 chr6 63604036 63604061 -85912976 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1070 1618 308 120 19 chr6 63604061 63604668 -85912369 - Lx9 LINE L1 -408 7236 6590 1 1070 2921 193 67 8 chr6 63606349 63606976 -85910061 + RMER6C LTR ERVK 1 664 -26 1 1070 826 238 0 0 chr6 63607031 63607191 -85909846 + RMER6D LTR ERVK 557 716 -4 1 1070 232 127 48 0 chr6 63607419 63607482 -85909555 + (TTTG)n Simple_repeat Simple_repeat 1 66 0 1 1070 2945 77 13 3 chr6 63607760 63608152 -85908885 - MTA_Mm LTR MaLR 0 396 1 1 1070 31 0 0 0 chr6 63608534 63608565 -85908472 + AT_rich Low_complexity Low_complexity 1 31 0 1 1070 26 30 0 0 chr6 63609017 63609050 -85907987 + AT_rich Low_complexity Low_complexity 1 33 0 1 1070 346 358 128 19 chr6 63609910 63610175 -85906862 - MLT1B LTR MaLR -74 316 23 1 1070 471 240 79 6 chr6 63611067 63611223 -85905814 - ORR1C1 LTR MaLR -49 335 164 1 1070 244 119 0 33 chr6 63611237 63611298 -85905739 + GA-rich Low_complexity Low_complexity 2 60 0 1 1070 889 201 16 16 chr6 63611350 63611537 -85905500 - ORR1C1 LTR MaLR -191 187 1 1 1070 911 252 20 16 chr6 63611537 63611790 -85905247 + Lx7 LINE L1 5601 5855 -1618 1 1070 397 178 37 18 chr6 63611790 63611899 -85905138 + Lx3_Mus LINE L1 6893 7003 -6 1 1070 825 283 66 16 chr6 63611899 63611950 -85905087 + Lx7 LINE L1 5856 5920 -1553 1 1070 683 308 76 66 chr6 63611967 63612353 -85904684 - MTD LTR MaLR -60 359 2 1 1070 292 345 14 14 chr6 63612590 63612737 -85904300 + Charlie14a DNA MER1_type 264 410 -754 1 1070 436 160 191 0 chr6 63612818 63612912 -85904125 + MTD LTR MaLR 252 363 -56 1 1070 191 367 40 20 chr6 63613291 63613391 -85903646 - MIRb SINE MIR -121 147 46 1 1070 21 36 0 0 chr6 63613445 63613473 -85903564 + AT_rich Low_complexity Low_complexity 1 28 0 1 1070 451 403 6 58 chr6 63613719 63614024 -85903013 - B4A SINE B4 0 292 1 1 1070 284 64 0 21 chr6 63614287 63614335 -85902702 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1070 22 35 0 0 chr6 63614759 63614788 -85902249 + AT_rich Low_complexity Low_complexity 1 29 0 1 1070 2480 59 0 0 chr6 63616781 63617101 -85899936 - L1Md_A LINE L1 0 6582 6263 1 1070 268 311 127 15 chr6 63617101 63617235 -85899802 + B3 SINE B2 64 212 -4 1 1070 245 310 19 57 chr6 63617482 63617588 -85899449 - MLT1B LTR MaLR -1 466 365 1 1070 36036 42 1 23 chr6 63617590 63623059 -85893978 + Lx LINE L1 24 5589 -297 1 1070 8906 9 0 0 chr6 63623059 63624055 -85892982 + L1Md_T LINE L1 5587 6582 0 1 1070 36036 87 17 13 chr6 63624055 63625235 -85891802 + Lx LINE L1 5590 6656 -1 1 1070 243 0 0 0 chr6 63625248 63625275 -85891762 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1070 301 288 91 111 chr6 63625275 63625647 -85891390 - MLT1B LTR MaLR -90 377 1 1 1070 2571 98 0 6 chr6 63626685 63627033 -85890004 - Lx LINE L1 -423 6231 5886 1 1070 1185 117 11 0 chr6 63627145 63627324 -85889713 - L1_Mus4 LINE L1 -741 5895 5715 1 1070 2424 117 29 5 chr6 63627324 63627710 -85889327 + Lx LINE L1 6247 6641 -13 1 1070 750 69 0 0 chr6 63627752 63627853 -85889184 + (GA)n Simple_repeat Simple_repeat 2 102 0 1 1070 923 186 78 0 chr6 63628039 63628206 -85888831 - ORR1B1 LTR MaLR -1 393 214 1 1070 839 283 9 13 chr6 63628236 63628462 -85888575 - Lx6 LINE L1 -26 7434 7210 1 1070 518 184 143 53 chr6 63628466 63628647 -85888390 - ORR1B1 LTR MaLR -183 191 1 1 1070 5672 158 13 26 chr6 63629220 63629357 -85887680 - Lx2A LINE L1 -438 6570 6439 1 1070 2587 75 6 31 chr6 63629357 63629712 -85887325 - ORR1A0 LTR MaLR 0 346 1 1 1070 5672 159 12 27 chr6 63629712 63630664 -85886373 - Lx2A LINE L1 -570 6438 5487 1 1070 901 80 16 0 chr6 63630653 63630778 -85886259 + Lx2A LINE L1 5357 5483 -400 1 1070 590 236 45 50 chr6 63630778 63630978 -85886059 - RLTR20D LTR ERVK -338 213 1 1 1070 477 242 128 8 chr6 63631147 63631280 -85885757 + Lx6 LINE L1 7301 7449 -11 1 1070 22 0 0 0 chr6 63631288 63631310 -85885727 + AT_rich Low_complexity Low_complexity 1 22 0 1 1070 365 244 52 9 chr6 63631328 63631444 -85885593 - Lx7 LINE L1 -1936 5760 5640 1 1070 4218 25 0 0 chr6 63631844 63632330 -85884707 - L1Md_A LINE L1 -143 6439 5954 1 1070 958 0 0 0 chr6 63632342 63632531 -85884506 + L1Md_A LINE L1 6464 6582 0 1 1070 32 26 0 0 chr6 63632673 63632712 -85884325 + AT_rich Low_complexity Low_complexity 1 39 0 1 1070 26 0 0 0 chr6 63633307 63633333 -85883704 + AT_rich Low_complexity Low_complexity 1 26 0 1 1070 38 61 0 0 chr6 63633684 63633750 -85883287 + AT_rich Low_complexity Low_complexity 1 66 0 1 1070 624 62 0 0 chr6 63633860 63633941 -85883096 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1070 264 289 81 41 chr6 63634423 63634580 -85882457 - MLT1B LTR MaLR -25 365 194 1 1070 297 312 8 16 chr6 63634582 63634709 -85882328 + (TA)n Simple_repeat Simple_repeat 2 127 0 1 1070 282 125 0 0 chr6 63634711 63634759 -85882278 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 2 1070 1315 206 24 0 chr6 63636140 63636387 -85880650 + RLTR12A LTR ERVK 5 257 -311 2 1070 957 169 29 17 chr6 63636402 63636577 -85880460 - RMER6D LTR ERVK -495 225 49 2 1070 2021 188 137 2 chr6 63636576 63636669 -85880368 + RMER6D LTR ERVK 232 335 -385 2 1070 573 55 0 0 chr6 63636669 63636742 -85880295 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 1070 2021 188 137 2 chr6 63636742 63637079 -85879958 + RMER6D LTR ERVK 336 719 -1 2 1070 689 250 20 41 chr6 63637155 63637351 -85879686 + RLTR12A LTR ERVK 362 553 -15 2 1070 261 345 59 33 chr6 63637388 63637541 -85879496 - LTR41 LTR ERVL -580 188 32 2 1070 221 255 59 0 chr6 63637902 63637953 -85879084 + AmnSINE1 SINE SINE 42 95 -480 2 1070 1449 12 0 0 chr6 63638053 63638251 -85878786 + L1Md_A LINE L1 6413 6582 0 2 1070 1275 26 0 0 chr6 63638259 63638410 -85878627 + L1_Mus1 LINE L1 6410 6560 -7 2 1070 387 0 0 0 chr6 63638411 63638454 -85878583 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 1070 27 0 0 0 chr6 63639068 63639095 -85877942 + AT_rich Low_complexity Low_complexity 1 27 0 2 1070 222 341 114 0 chr6 63639738 63639826 -85877211 + B4A SINE B4 1 98 -194 2 1070 21 0 0 0 chr6 63640089 63640110 -85876927 + AT_rich Low_complexity Low_complexity 1 21 0 2 1070 1446 77 21 0 chr6 63640203 63640397 -85876640 - L1_Mus1 LINE L1 -285 6282 6085 2 1070 1707 63 0 5 chr6 63640399 63640621 -85876416 + L1_Mus1 LINE L1 6343 6563 -4 2 1070 679 309 74 76 chr6 63640627 63641225 -85875812 + L1_Mur3 LINE L1 1705 2257 -3623 2 1070 4891 53 8 2 chr6 63641225 63641843 -85875194 + L1_Mus1 LINE L1 5943 6564 -3 2 1070 679 309 74 76 chr6 63641843 63642283 -85874754 + L1_Mur3 LINE L1 2258 2741 -3139 2 1070 323 330 91 44 chr6 63642448 63642810 -85874227 + Charlie1a DNA MER1_type 1007 1385 -70 2 1070 351 88 18 0 chr6 63642945 63643002 -85874035 - L1_Mus3 LINE L1 -490 6148 6091 2 1070 2897 123 45 2 chr6 63643002 63643468 -85873569 + L1_Mus3 LINE L1 6153 6638 0 2 1070 531 45 0 0 chr6 63643490 63643556 -85873481 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 2 1070 21 0 0 0 chr6 63643877 63643898 -85873139 + AT_rich Low_complexity Low_complexity 1 21 0 2 1070 860 249 50 18 chr6 63644356 63644577 -85872460 - MTD LTR MaLR -191 228 1 2 1070 500 95 12 0 chr6 63644833 63644917 -85872120 + (TATG)n Simple_repeat Simple_repeat 4 88 0 2 1070 40492 15 1 6 chr6 63645172 63651375 -85865662 - L1Md_A LINE L1 0 6582 418 2 1070 227 343 0 0 chr6 63651578 63651645 -85865392 + PB1D7 SINE Alu 46 112 -8 2 1070 28 0 0 0 chr6 63651672 63651700 -85865337 + AT_rich Low_complexity Low_complexity 1 28 0 2 1070 6630 204 13 4 chr6 63652716 63654284 -85862753 - Lx2B LINE L1 -5 6995 5417 2 1070 8287 169 34 20 chr6 63654289 63655144 -85861893 + L1_Mur2 LINE L1 3636 4519 -1358 2 1070 1924 51 39 12 chr6 63655144 63655403 -85861634 + L1Md_F3 LINE L1 6318 6583 -1 2 1070 8287 174 34 21 chr6 63655403 63656315 -85860722 + L1_Mur2 LINE L1 4520 5465 -835 2 1070 225 196 0 0 chr6 63657191 63657242 -85859795 + (CATA)n Simple_repeat Simple_repeat 3 53 0 2 1070 264 388 47 52 chr6 63657445 63657737 -85859300 - B4A SINE B4 0 292 2 2 1070 28 0 0 0 chr6 63657820 63657848 -85859189 + AT_rich Low_complexity Low_complexity 1 28 0 2 1070 2749 283 46 20 chr6 63657865 63658541 -85858496 - L1_Mur3 LINE L1 -836 5044 4353 2 1070 525 66 33 0 chr6 63658541 63658632 -85858405 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 2 1070 2749 283 46 20 chr6 63658632 63658701 -85858336 - L1_Mur3 LINE L1 -1528 4352 4281 2 1070 3378 127 60 5 chr6 63658701 63659264 -85857773 - L1_Mus4 LINE L1 -6 6630 6037 2 1070 2749 283 46 20 chr6 63659264 63659759 -85857278 - L1_Mur3 LINE L1 -1600 4280 3772 2 1070 795 64 0 0 chr6 63659796 63659906 -85857131 + (CA)n Simple_repeat Simple_repeat 2 111 0 2 1070 833 305 38 16 chr6 63659907 63660227 -85856810 + Lx8 LINE L1 6696 7022 -451 2 1070 3731 244 18 51 chr6 63661282 63662270 -85854767 - Lx7 LINE L1 -354 7342 6387 2 1070 808 268 83 12 chr6 63662277 63662575 -85854462 - Lx7 LINE L1 -1203 6257 5950 2 1070 675 65 0 0 chr6 63665751 63665844 -85851193 + (GA)n Simple_repeat Simple_repeat 2 94 0 2 1070 279 253 55 49 chr6 63668770 63668953 -85848084 - Charlie1b DNA MER1_type -70 453 270 2 1070 29 0 0 0 chr6 63669871 63669900 -85847137 + AT_rich Low_complexity Low_complexity 1 29 0 2 1070 282 294 0 0 chr6 63670271 63670339 -85846698 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 2 1070 195 326 40 20 chr6 63670358 63670458 -85846579 - MIRb SINE MIR -56 212 107 2 1070 1092 96 17 6 chr6 63671811 63671989 -85845048 + L1_Mus3 LINE L1 6459 6638 0 2 1070 324 0 0 0 chr6 63672038 63672074 -85844963 + (TTATG)n Simple_repeat Simple_repeat 3 38 0 2 1070 3313 148 42 12 chr6 63674643 63675233 -85841804 - L1_Mur1 LINE L1 -135 5751 5144 2 1070 22 56 0 0 chr6 63676310 63676346 -85840691 + AT_rich Low_complexity Low_complexity 1 36 0 2 1070 242 299 145 55 chr6 63678877 63679022 -85838015 - MER20 DNA MER1_type -59 160 3 2 1070 1715 166 30 36 chr6 63679096 63679427 -85837610 + ORR1A4 LTR MaLR 1 329 0 2 1070 22 35 0 0 chr6 63680149 63680178 -85836859 + AT_rich Low_complexity Low_complexity 1 29 0 2 1070 261 57 0 0 chr6 63680215 63680250 -85836787 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1070 239 333 53 26 chr6 63682785 63682899 -85834138 - RSINE1 SINE B4 -37 128 12 2 1070 21 36 0 0 chr6 63683671 63683699 -85833338 + AT_rich Low_complexity Low_complexity 1 28 0 2 1070 240 217 0 0 chr6 63684718 63684764 -85832273 + Lx7 LINE L1 7179 7224 -472 2 1070 363 23 0 0 chr6 63684856 63684900 -85832137 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1070 1665 250 78 46 chr6 63684902 63685590 -85831447 - RMER1A Other Other -163 867 275 2 1070 23 33 0 0 chr6 63686684 63686714 -85830323 + AT_rich Low_complexity Low_complexity 1 30 0 2 1070 1439 297 93 59 chr6 63686917 63687614 -85829423 + Lx8 LINE L1 6747 7467 -6 2 1070 371 321 43 52 chr6 63687939 63688054 -85828983 - ID_B1 SINE B4 -18 206 93 2 1070 21 36 0 0 chr6 63688140 63688168 -85828869 + AT_rich Low_complexity Low_complexity 1 28 0 2 1070 202 239 0 0 chr6 63688210 63688256 -85828781 + T-rich Low_complexity Low_complexity 1 46 0 2 1070 409 176 9 73 chr6 63688855 63688965 -85828072 + MTB_Mm LTR MaLR 305 407 0 2 1070 515 115 13 0 chr6 63689126 63689204 -85827833 - L1_Mur3 LINE L1 -1315 4565 4487 2 1070 7310 127 4 3 chr6 63689203 63690836 -85826201 + Lx LINE L1 5015 6648 -6 2 1070 2004 49 0 0 chr6 63691557 63691803 -85825234 + L1_Mus1 LINE L1 6316 6561 -6 2 1070 21 82 0 0 chr6 63691997 63692046 -85824991 + AT_rich Low_complexity Low_complexity 1 49 0 2 1070 1896 75 4 8 chr6 63693347 63693601 -85823436 + Lx3_Mus LINE L1 6336 6588 -421 2 1070 395 0 0 162 chr6 63693603 63694022 -85823015 + (CAGAG)n Simple_repeat Simple_repeat 1 350 0 2 1070 3014 87 7 2 chr6 63694024 63694451 -85822586 + Lx3_Mus LINE L1 6581 7009 0 2 1070 580 248 73 0 chr6 63694950 63695087 -85821950 - RSINE1 SINE B4 -8 157 11 2 1070 482 308 98 23 chr6 63695147 63695577 -85821460 + Lx8 LINE L1 7004 7465 -8 2 1070 360 236 42 63 chr6 63695680 63695775 -85821262 + RSINE1 SINE B4 12 104 -61 2 1070 234 0 0 0 chr6 63695816 63695842 -85821195 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1070 1028 240 169 39 chr6 63696040 63696396 -85820641 + MTD LTR MaLR 18 419 0 2 1070 321 89 0 0 chr6 63696513 63696558 -85820479 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1070 624 159 17 17 chr6 63697033 63697212 -85819825 + (TG)n Simple_repeat Simple_repeat 1 179 0 2 1070 295 218 27 7 chr6 63697248 63697396 -85819641 + (TG)n Simple_repeat Simple_repeat 1 151 0 2 1070 180 164 45 0 chr6 63697485 63697552 -85819485 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1070 361 294 56 44 chr6 63697577 63697737 -85819300 - RSINE1 SINE B4 0 165 4 2 1070 250 293 119 24 chr6 63698836 63698962 -85818075 - L2c LINE L2 0 3387 3250 2 1070 1169 61 0 26 chr6 63700541 63700693 -85816344 - B1_Mus1 SINE Alu 0 148 1 2 1071 1380 340 80 49 chr6 63702368 63703426 -85813611 - Lx8 LINE L1 -53 7420 6330 2 1071 335 31 30 45 chr6 63703500 63703567 -85813470 + (TTTTTG)n Simple_repeat Simple_repeat 6 71 0 2 1071 1102 75 7 0 chr6 63703567 63703713 -85813324 - B1_Mus1 SINE Alu 0 148 2 2 1071 640 299 52 85 chr6 63703732 63704039 -85812998 - MTD LTR MaLR -122 297 1 2 1071 284 250 0 0 chr6 63704039 63704119 -85812918 - Lx5 LINE L1 -1241 5809 5730 2 1071 1145 255 23 51 chr6 63704558 63704795 -85812242 - Lx5 LINE L1 -201 5679 5451 2 1071 1160 111 18 0 chr6 63704795 63704966 -85812071 - B2_Mm2 SINE B2 -19 176 3 2 1071 1145 255 23 51 chr6 63704966 63705079 -85811958 - Lx5 LINE L1 -430 5450 5339 2 1071 26 0 0 0 chr6 63705087 63705113 -85811924 + AT_rich Low_complexity Low_complexity 1 26 0 2 1071 1741 225 55 9 chr6 63705164 63705600 -85811437 - Lx9 LINE L1 -157 7487 7032 2 1071 467 241 82 36 chr6 63705680 63705874 -85811163 - Lx5 LINE L1 -1128 4752 4550 2 1071 22 0 0 0 chr6 63705926 63705948 -85811089 + AT_rich Low_complexity Low_complexity 1 22 0 2 1071 395 354 120 19 chr6 63705995 63706254 -85810783 + B4A SINE B4 5 289 -3 2 1071 244 323 120 10 chr6 63708051 63708151 -85808886 - PB1 SINE Alu -11 116 6 2 1071 482 149 26 17 chr6 63708188 63708304 -85808733 + CT-rich Low_complexity Low_complexity 2 118 0 2 1071 2829 178 27 103 chr6 63708411 63708717 -85808320 + RMER6C LTR ERVK 3 313 -377 2 1071 3602 141 125 12 chr6 63708717 63709444 -85807593 - RMER17D2 LTR ERVK 0 809 1 2 1071 2829 178 27 103 chr6 63709444 63709882 -85807155 + RMER6C LTR ERVK 314 690 0 2 1071 22 56 0 0 chr6 63710792 63710828 -85806209 + AT_rich Low_complexity Low_complexity 1 36 0 2 1071 705 24 0 0 chr6 63711359 63711442 -85805595 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1071 365 351 23 17 chr6 63711955 63712129 -85804908 + MIR3 SINE MIR 5 179 -29 2 1071 217 0 29 29 chr6 63712806 63712840 -85804197 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 2 1071 22 56 0 0 chr6 63713068 63713104 -85803933 + AT_rich Low_complexity Low_complexity 1 36 0 2 1071 462 108 0 0 chr6 63714003 63714077 -85802960 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1071 267 31 0 0 chr6 63714207 63714239 -85802798 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1071 654 272 25 59 chr6 63715157 63715395 -85801642 + L1M1 LINE L1 5438 5667 -501 2 1071 186 292 0 65 chr6 63715448 63715525 -85801512 + MIR SINE MIR 120 191 -71 3 1071 228 290 43 0 chr6 63715860 63715929 -85801108 + B4A SINE B4 136 207 -85 3 1071 968 106 6 0 chr6 63715931 63716110 -85800927 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1071 1395 184 92 0 chr6 63716120 63716413 -85800624 - RMER4B LTR ERVK -263 322 3 3 1071 275 320 39 26 chr6 63719532 63719609 -85797428 - PB1D10 SINE Alu -27 90 13 3 1071 21 0 0 0 chr6 63719996 63720017 -85797020 + AT_rich Low_complexity Low_complexity 1 21 0 3 1071 24 53 0 0 chr6 63720194 63720232 -85796805 + AT_rich Low_complexity Low_complexity 1 38 0 3 1071 1102 119 68 0 chr6 63720352 63720574 -85796463 + L1_Mus2 LINE L1 6369 6566 0 3 1071 236 295 91 45 chr6 63720797 63720907 -85796130 + B4 SINE B4 151 265 -27 3 1071 329 259 0 0 chr6 63721560 63721645 -85795392 - Lx3A LINE L1 -7 6974 6890 3 1071 5368 129 28 30 chr6 63721635 63722524 -85794513 - Lx3B LINE L1 -221 6752 5866 3 1071 1144 91 17 0 chr6 63724006 63724181 -85792856 + (GGGGA)n Simple_repeat Simple_repeat 3 180 0 3 1071 759 341 62 14 chr6 63724459 63724816 -85792221 + MTE2a LTR MaLR 1 374 -5 3 1071 21 0 0 0 chr6 63725190 63725211 -85791826 + AT_rich Low_complexity Low_complexity 1 21 0 3 1071 3525 181 96 30 chr6 63725680 63726484 -85790553 - RMER12 LTR ERVK -136 1186 330 3 1071 379 35 35 0 chr6 63726502 63726559 -85790478 + (CAA)n Simple_repeat Simple_repeat 2 60 0 3 1071 683 28 36 9 chr6 63726617 63726727 -85790310 + L1Md_F3 LINE L1 6470 6582 -2 3 1071 495 123 0 0 chr6 63727273 63727354 -85789683 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 3 1071 1758 183 107 13 chr6 63727491 63727874 -85789163 - MTC LTR MaLR -2 419 1 3 1071 22 35 0 0 chr6 63728166 63728195 -85788842 + AT_rich Low_complexity Low_complexity 1 29 0 3 1071 799 312 42 58 chr6 63729584 63729945 -85787092 + Lx6 LINE L1 7101 7455 -5 3 1071 729 242 71 55 chr6 63730016 63730326 -85786711 - Lx8 LINE L1 -28 7445 7131 3 1071 315 227 2 62 chr6 63730332 63730452 -85786585 - L1PB4 LINE L1 -343 5948 5835 3 1071 440 282 62 52 chr6 63730478 63730507 -85786530 - L1PB4 LINE L1 -629 5671 5643 3 1071 198 0 0 0 chr6 63730507 63730529 -85786508 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1071 440 282 65 69 chr6 63730529 63730811 -85786226 - L1PB4 LINE L1 -658 5642 5357 3 1071 3275 200 47 52 chr6 63730859 63731321 -85785716 + RLTR13A LTR ERVK 1 450 -405 3 1071 7952 50 1 0 chr6 63731321 63732332 -85784705 + L1Md_F2 LINE L1 5591 6582 0 3 1071 3275 200 47 52 chr6 63732332 63732728 -85784309 + RLTR13A LTR ERVK 451 854 -1 3 1071 326 411 25 30 chr6 63732969 63733172 -85783865 + B4 SINE B4 10 211 -81 3 1071 213 291 12 25 chr6 63733197 63733278 -85783759 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 3 1071 732 302 129 15 chr6 63734099 63734432 -85782605 - MTD LTR MaLR -14 405 35 3 1071 791 177 152 0 chr6 63734435 63734593 -85782444 + URR1A DNA MER1_type 2 183 -43 3 1071 354 257 14 62 chr6 63735831 63735976 -85781061 - Lx7 LINE L1 0 7696 7559 3 1071 231 206 56 56 chr6 63737831 63737903 -85779134 - Charlie11 DNA MER1_type -1107 1089 1018 3 1071 2681 249 40 15 chr6 63738328 63739407 -85777630 - Lx7 LINE L1 -1227 6469 5351 3 1071 5161 184 82 16 chr6 63739415 63741342 -85775695 - Lx2B LINE L1 -13 6987 4929 3 1071 2966 221 72 26 chr6 63741335 63742250 -85774787 - Lx7 LINE L1 -517 5363 4407 3 1071 536 311 297 40 chr6 63743528 63744034 -85773003 - Lx9 LINE L1 -52 7592 6957 3 1071 745 298 30 104 chr6 63744766 63745191 -85771846 - RLTR11B LTR ERVK -55 472 80 3 1071 1832 129 9 51 chr6 63745191 63745526 -85771511 - RLTRETN_Mm LTR ERVK -1 321 1 3 1071 745 276 8 63 chr6 63745526 63745616 -85771421 - RLTR11B LTR ERVK -374 79 1 3 1071 4050 75 0 0 chr6 63745768 63746287 -85770750 - L1_Mus3 LINE L1 -385 6253 5735 3 1071 22 35 0 0 chr6 63746690 63746719 -85770318 + AT_rich Low_complexity Low_complexity 1 29 0 3 1071 261 0 0 0 chr6 63748248 63748277 -85768760 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1071 829 28 9 9 chr6 63748282 63748391 -85768646 + (TAGA)n Simple_repeat Simple_repeat 2 110 0 3 1071 368 192 10 0 chr6 63749336 63749440 -85767597 + (TA)n Simple_repeat Simple_repeat 2 106 0 3 1071 205 156 22 22 chr6 63749893 63749939 -85767098 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1071 255 61 0 0 chr6 63749968 63750001 -85767036 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 1071 1086 300 37 21 chr6 63750010 63750391 -85766646 - Lx9 LINE L1 -138 7506 7120 3 1071 206 0 69 0 chr6 63751305 63751334 -85765703 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 3 1071 575 242 15 29 chr6 63751357 63751372 -85765665 + MTD LTR MaLR 114 126 -293 3 1071 2620 73 48 0 chr6 63751372 63751728 -85765309 - L1_Mus1 LINE L1 -1 6566 6194 3 1071 575 242 15 29 chr6 63751728 63751848 -85765189 + MTD LTR MaLR 127 247 -172 3 1071 22 56 0 0 chr6 63752348 63752384 -85764653 + AT_rich Low_complexity Low_complexity 1 36 0 3 1071 265 225 34 17 chr6 63752473 63752546 -85764491 + B2_Mm2 SINE B2 8 85 -108 3 1071 333 0 0 0 chr6 63752695 63752732 -85764305 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 1071 4510 63 0 3 chr6 63752835 63753411 -85763626 - L1Md_F2 LINE L1 -12 6570 5997 3 1071 219 158 53 0 chr6 63753913 63753970 -85763067 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1071 315 0 0 0 chr6 63757504 63757539 -85759498 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 3 1071 292 325 51 0 chr6 63757923 63758040 -85758997 + MER5A1 DNA MER1_type 43 165 -1 3 1071 2266 171 5 29 chr6 63758742 63759157 -85757880 - Lx3C LINE L1 -1 6975 6571 3 1071 582 257 27 69 chr6 63759214 63759402 -85757635 + B3A SINE B2 3 182 -16 3 1071 22 35 0 0 chr6 63759514 63759543 -85757494 + AT_rich Low_complexity Low_complexity 1 29 0 3 1071 803 119 75 0 chr6 63759632 63759766 -85757271 + L1Md_F2 LINE L1 6423 6566 -16 3 1071 229 192 26 40 chr6 63761481 63761547 -85755490 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 1071 477 34 0 0 chr6 63761547 63761606 -85755431 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1071 465 34 0 0 chr6 63761606 63761664 -85755373 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1071 229 192 26 40 chr6 63761664 63761672 -85755365 + (TA)n Simple_repeat Simple_repeat 1 7 0 3 1071 212 323 0 0 chr6 63761673 63761735 -85755302 - BC1_Mm scRNA scRNA -85 67 6 3 1071 542 188 12 12 chr6 63761738 63761910 -85755127 + (TA)n Simple_repeat Simple_repeat 2 173 0 3 1071 25 0 0 0 chr6 63761910 63761935 -85755102 + AT_rich Low_complexity Low_complexity 1 25 0 3 1071 342 0 0 0 chr6 63761982 63762020 -85755017 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 3 1071 892 208 50 10 chr6 63762021 63762220 -85754817 - Lx3C LINE L1 -11 6965 6759 3 1071 7160 102 19 5 chr6 63762223 63763459 -85753578 - L1_Mus3 LINE L1 -6 6632 5382 3 1071 189 0 0 0 chr6 63766276 63766297 -85750740 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 3 1071 309 51 0 0 chr6 63767307 63767346 -85749691 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1071 495 118 0 0 chr6 63768083 63768159 -85748878 + (GA)n Simple_repeat Simple_repeat 2 77 0 3 1071 462 140 10 20 chr6 63768376 63768478 -85748559 + GA-rich Low_complexity Low_complexity 3 103 0 3 1071 205 222 0 18 chr6 63768956 63769011 -85748026 + T-rich Low_complexity Low_complexity 5 58 0 3 1071 2148 127 77 13 chr6 63769185 63769577 -85747460 + Lx LINE L1 6238 6654 0 3 1071 280 219 40 48 chr6 63769611 63769736 -85747301 + Lx6 LINE L1 7310 7433 -27 3 1071 1313 145 25 13 chr6 63772176 63772414 -85744623 - Lx2 LINE L1 -2 6995 6755 3 1071 32 26 0 0 chr6 63772701 63772740 -85744297 + AT_rich Low_complexity Low_complexity 1 39 0 3 1071 223 154 31 0 chr6 63775163 63775228 -85741809 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1071 308 94 19 0 chr6 63775230 63775283 -85741754 + (CAGAGA)n Simple_repeat Simple_repeat 3 56 0 3 1071 21 57 0 0 chr6 63775663 63775698 -85741339 + AT_rich Low_complexity Low_complexity 1 35 0 3 1071 1029 195 120 7 chr6 63775917 63776216 -85740821 + Lx9 LINE L1 7311 7643 -1 3 1071 249 57 0 0 chr6 63776349 63776384 -85740653 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 3 1071 297 234 121 0 chr6 63777223 63777347 -85739690 - L1MA4 LINE L1 -383 5917 5779 3 1071 434 303 45 55 chr6 63777366 63777656 -85739381 - RLTR15 LTR ERVK -33 326 40 3 1071 234 278 72 27 chr6 63777809 63777920 -85739117 - Lx7 LINE L1 -1951 5745 5630 3 1071 23 0 0 0 chr6 63778838 63778861 -85738176 + AT_rich Low_complexity Low_complexity 1 23 0 3 1071 414 57 0 0 chr6 63778894 63778947 -85738090 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1071 294 29 0 0 chr6 63778947 63778982 -85738055 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1071 1188 68 0 0 chr6 63779752 63779899 -85737138 - B1_Mus1 SINE Alu 0 148 2 3 1071 1900 233 63 30 chr6 63779909 63780421 -85736616 - RMER1B Other Other -4 1338 418 3 1071 319 227 10 10 chr6 63780636 63780734 -85736303 + GA-rich Low_complexity Low_complexity 2 99 0 3 1071 391 316 47 22 chr6 63782113 63782416 -85734621 + L1MB7 LINE L1 5645 5941 -233 3 1071 373 290 148 9 chr6 63784130 63784346 -85732691 + L1MA9 LINE L1 5540 5785 -527 3 1071 304 270 16 0 chr6 63784398 63784461 -85732576 + RSINE1 SINE B4 82 145 -20 3 1071 297 0 0 0 chr6 63784465 63784498 -85732539 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 3 1071 271 240 56 40 chr6 63784515 63784641 -85732396 + L1MA9 LINE L1 5769 5896 -416 3 1071 6455 128 21 43 chr6 63785391 63786206 -85730831 - Lx LINE L1 -8 6646 5858 3 1071 441 0 0 0 chr6 63786206 63786255 -85730782 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1071 6455 146 11 17 chr6 63786255 63786980 -85730057 - Lx LINE L1 -797 5857 5130 3 1071 4903 146 5 5 chr6 63786973 63787824 -85729213 + L1_Mur2 LINE L1 3412 4262 -1615 3 1071 536 358 52 60 chr6 63788007 63788388 -85728649 - MER21B LTR ERV1 -55 808 431 3 1071 273 333 21 64 chr6 63788405 63788546 -85728491 + MER2 DNA MER2_type 207 341 -4 3 1071 418 362 109 37 chr6 63788771 63789344 -85727693 + MER44D DNA MER2_type 72 702 -3 3 1071 395 297 9 9 chr6 63791506 63791618 -85725419 - MLT1A0 LTR MaLR -45 320 209 4 1071 1038 276 98 53 chr6 63791850 63792359 -85724678 - MTD-int LTR MaLR -726 532 1 4 1071 912 296 106 16 chr6 63792359 63792727 -85724310 - MTD LTR MaLR 0 419 19 4 1071 414 39 0 0 chr6 63793469 63793521 -85723516 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1071 21 36 0 0 chr6 63793879 63793907 -85723130 + AT_rich Low_complexity Low_complexity 1 28 0 4 1071 315 0 0 0 chr6 63794020 63794055 -85722982 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1071 501 32 0 0 chr6 63794055 63794117 -85722920 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1071 4720 47 14 0 chr6 63794895 63795474 -85721563 + L1_Mus1 LINE L1 5981 6567 0 4 1071 318 148 0 0 chr6 63795700 63795754 -85721283 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 4 1071 2730 120 9 19 chr6 63795754 63796186 -85720851 - Lx3A LINE L1 -2 6979 6552 4 1071 1497 142 25 14 chr6 63796187 63796472 -85720565 - Lx3A LINE L1 -804 6177 5890 4 1071 579 29 0 0 chr6 63796534 63796603 -85720434 + (GA)n Simple_repeat Simple_repeat 1 69 0 4 1071 513 328 98 49 chr6 63797288 63797554 -85719483 - RMER15 LTR ERVL -1 574 296 4 1071 21 0 0 0 chr6 63797674 63797695 -85719342 + AT_rich Low_complexity Low_complexity 1 21 0 4 1071 5408 176 45 44 chr6 63797696 63798776 -85718261 - Lx4A LINE L1 -1 7057 5977 4 1071 1156 217 46 11 chr6 63798776 63799037 -85718000 - RLTR22_Mur LTR ERVK 0 1848 1579 4 1071 3439 211 50 36 chr6 63799241 63799374 -85717663 - RLTR22_Mus LTR ERVK -877 931 791 4 1071 267 31 0 0 chr6 63799374 63799406 -85717631 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1071 3800 170 33 32 chr6 63799406 63800013 -85717024 - RLTR22_Mur LTR ERVK -1063 785 179 4 1071 344 21 42 0 chr6 63800013 63800061 -85716976 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 4 1071 3800 170 33 32 chr6 63800061 63800237 -85716800 - RLTR22_Mur LTR ERVK -1670 178 1 4 1071 1108 136 0 0 chr6 63800240 63800417 -85716620 - Lx4A LINE L1 -1079 5979 5803 4 1071 405 123 0 0 chr6 63800841 63800906 -85716131 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1071 22 0 0 0 chr6 63800953 63800975 -85716062 + AT_rich Low_complexity Low_complexity 1 22 0 4 1071 22 0 0 0 chr6 63801046 63801068 -85715969 + AT_rich Low_complexity Low_complexity 1 22 0 4 1071 23 0 0 0 chr6 63802036 63802059 -85714978 + AT_rich Low_complexity Low_complexity 1 23 0 4 1071 243 211 20 59 chr6 63803401 63803502 -85713535 + (TATATG)n Simple_repeat Simple_repeat 5 101 0 4 1071 435 311 32 44 chr6 63803841 63804090 -85712947 - L1_Rod LINE L1 -174 5673 5428 4 1071 1247 74 0 11 chr6 63804104 63804281 -85712756 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 4 1071 477 348 25 34 chr6 63804293 63804617 -85712420 - L1M2 LINE L1 -3007 3136 2816 4 1071 646 221 80 7 chr6 63804642 63804779 -85712258 - B1_Mus1 SINE Alu -1 147 1 4 1071 717 308 134 64 chr6 63804801 63805582 -85711455 - Lx9 LINE L1 -20 7624 6789 4 1071 247 230 32 75 chr6 63805598 63805692 -85711345 - L1_Mur3 LINE L1 -3077 2803 2714 4 1071 297 337 102 18 chr6 63805701 63806060 -85710977 - L1_Mur3 LINE L1 -3638 2502 2118 4 1071 403 260 16 8 chr6 63806067 63806195 -85710842 - Lx7 LINE L1 -1467 6229 6101 4 1071 305 308 55 18 chr6 63806359 63806468 -85710569 - Lx8 LINE L1 -195 7278 7166 4 1071 582 238 120 36 chr6 63806794 63806986 -85710051 + B3 SINE B2 1 208 -8 4 1071 21 0 0 0 chr6 63807213 63807234 -85709803 + AT_rich Low_complexity Low_complexity 1 21 0 4 1071 213 39 0 0 chr6 63808511 63808537 -85708500 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1071 980 80 0 28 chr6 63808537 63808678 -85708359 - B1_Mus1 SINE Alu 0 148 12 4 1071 422 278 66 33 chr6 63808995 63809177 -85707860 - L2a LINE L2 0 3426 3239 4 1071 189 114 0 0 chr6 63809831 63809845 -85707192 + (TA)n Simple_repeat Simple_repeat 1 14 0 4 1071 579 29 0 0 chr6 63809845 63809914 -85707123 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1071 189 114 0 0 chr6 63809914 63809934 -85707103 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 1071 263 232 29 0 chr6 63813309 63813378 -85703659 + GA-rich Low_complexity Low_complexity 3 73 0 4 1071 706 298 24 6 chr6 63813496 63813665 -85703372 + B3 SINE B2 2 173 -43 4 1071 1396 127 92 4 chr6 63813671 63813900 -85703137 - MT2B LTR ERVL -352 249 1 4 1071 291 335 53 83 chr6 63814036 63814264 -85702773 - MamRep605 Unknown Unknown -591 285 65 4 1071 558 0 0 0 chr6 63816563 63816625 -85700412 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1071 374 324 61 20 chr6 63817986 63818134 -85698903 + RSINE1 SINE B4 12 165 0 4 1071 1228 328 81 11 chr6 63818347 63818917 -85698120 - Lx8 LINE L1 -272 7201 6592 4 1071 4493 127 3 0 chr6 63819062 63819737 -85697300 - L1_Mus3 LINE L1 -96 5787 5111 4 1071 232 111 0 0 chr6 63819726 63819762 -85697275 + L1_Mus3 LINE L1 5762 5797 -841 4 1071 1685 94 5 0 chr6 63819747 63819970 -85697067 - L1Md_F2 LINE L1 -395 6187 5964 4 1071 2768 68 0 45 chr6 63819970 63820373 -85696664 + L1Md_F2 LINE L1 6190 6574 -8 4 1071 1400 59 0 5 chr6 63820502 63820688 -85696349 + L1_Mus2 LINE L1 6381 6565 -1 4 1071 5096 97 94 25 chr6 63820696 63820894 -85696143 + L1_Mus3 LINE L1 5783 6053 -585 4 1071 1090 75 7 0 chr6 63820894 63821040 -85695997 + B1_Mm SINE Alu 1 147 0 4 1071 5096 97 94 25 chr6 63821040 63821642 -85695395 + L1_Mus3 LINE L1 6054 6638 0 4 1071 4509 248 87 25 chr6 63821962 63822073 -85694964 - Lx9 LINE L1 0 7644 7523 4 1071 486 88 0 0 chr6 63822073 63822141 -85694896 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1071 4509 248 87 25 chr6 63822141 63822533 -85694504 - Lx9 LINE L1 -122 7522 7047 4 1071 312 27 0 0 chr6 63822533 63822570 -85694467 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1071 4509 248 87 25 chr6 63822570 63823319 -85693718 - Lx9 LINE L1 -598 7046 6315 4 1071 358 326 48 11 chr6 63824903 63825089 -85691948 - L1VL4 LINE L1 -5976 326 134 4 1071 7321 95 17 5 chr6 63825116 63826245 -85690792 + L1_Mus3 LINE L1 5493 6632 -6 4 1071 24 67 0 0 chr6 63826361 63826406 -85690631 + AT_rich Low_complexity Low_complexity 1 45 0 4 1071 669 258 113 0 chr6 63826621 63826815 -85690222 + B3 SINE B2 1 216 0 4 1071 26 30 0 0 chr6 63826972 63827005 -85690032 + AT_rich Low_complexity Low_complexity 1 33 0 4 1071 429 20 0 0 chr6 63827675 63827725 -85689312 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1071 234 372 22 7 chr6 63828648 63828786 -85688251 - MIR SINE MIR -79 183 44 4 1071 982 206 27 0 chr6 63829206 63829425 -85687612 + URR1A DNA MER1_type 2 226 0 4 1071 362 328 45 38 chr6 63829632 63829765 -85687272 + RSINE1 SINE B4 3 136 -29 4 1071 318 26 0 0 chr6 63829798 63829837 -85687200 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1071 5487 50 0 9 chr6 63830026 63830715 -85686322 + L1Md_F2 LINE L1 5889 6571 -11 4 1071 233 363 63 16 chr6 63831169 63831295 -85685742 + MER5A DNA MER1_type 5 136 -53 4 1071 24 53 0 0 chr6 63831317 63831355 -85685682 + AT_rich Low_complexity Low_complexity 1 38 0 4 1072 710 194 0 13 chr6 63833627 63833784 -85683253 + GA-rich Low_complexity Low_complexity 1 155 0 4 1072 490 317 1 0 chr6 63834647 63834788 -85682249 + B1F1 SINE Alu 1 142 -7 4 1072 2581 41 3 0 chr6 63835255 63835572 -85681465 - L1Md_F3 LINE L1 -15 6569 6252 4 1072 23 33 0 0 chr6 63836375 63836405 -85680632 + AT_rich Low_complexity Low_complexity 1 30 0 4 1072 1236 332 52 39 chr6 63837425 63837964 -85679073 - Lx5 LINE L1 -18 7032 6487 4 1072 22 0 0 0 chr6 63838361 63838383 -85678654 + AT_rich Low_complexity Low_complexity 1 22 0 4 1072 1516 338 101 30 chr6 63839230 63839316 -85677721 - Lx8 LINE L1 -28 7445 7329 4 1072 180 0 0 0 chr6 63839316 63839336 -85677701 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1072 1516 338 101 30 chr6 63839336 63840278 -85676759 - Lx8 LINE L1 -145 7328 6344 4 1072 337 206 0 113 chr6 63840263 63840378 -85676659 - Lx7 LINE L1 -184 7512 7411 4 1072 230 297 0 135 chr6 63840943 63841017 -85676020 - B4 SINE B4 0 292 229 4 1072 265 378 40 0 chr6 63841029 63841177 -85675860 - B4 SINE B4 -131 161 8 4 1072 294 333 9 35 chr6 63842377 63842492 -85674545 + ID_B1 SINE B4 109 220 -4 4 1072 210 37 0 0 chr6 63842544 63842571 -85674466 + (TAA)n Simple_repeat Simple_repeat 2 28 0 4 1072 24 32 0 0 chr6 63842657 63842688 -85674349 + AT_rich Low_complexity Low_complexity 1 31 0 4 1072 305 282 84 89 chr6 63843373 63843587 -85673450 - MLT1A0 LTR MaLR -150 215 3 4 1072 183 170 0 0 chr6 63843622 63843669 -85673368 + T-rich Low_complexity Low_complexity 1 47 0 4 1072 298 253 89 95 chr6 63844040 63844058 -85672979 + CYRA11_Mm Unknown Y-chromosome 215 336 -281 4 1072 811 155 148 0 chr6 63844058 63844213 -85672824 - URR1A DNA MER1_type -48 178 1 4 1072 468 0 0 0 chr6 63844732 63844784 -85672253 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1072 210 286 0 0 chr6 63844791 63844840 -85672197 + GA-rich Low_complexity Low_complexity 3 51 0 4 1072 180 0 0 0 chr6 63845001 63845021 -85672016 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1072 234 61 0 0 chr6 63845452 63845566 -85671471 - L1Md_F3 LINE L1 0 6584 6530 4 1072 8352 62 10 4 chr6 63845571 63847336 -85669701 - L1Md_F2 LINE L1 -10 6572 4800 4 1072 766 214 48 43 chr6 63848365 63848575 -85668462 + B3 SINE B2 2 212 -4 4 1072 456 271 171 5 chr6 63848641 63849018 -85668019 + L1M5 LINE L1 3094 3563 -2583 4 1072 241 246 18 0 chr6 63849030 63849087 -85667950 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1072 424 75 299 10 chr6 63849370 63849466 -85667571 + Lx LINE L1 6500 6649 -5 4 1072 350 302 0 0 chr6 63849476 63849582 -85667455 + Lx9 LINE L1 7320 7425 -219 4 1072 294 302 6 115 chr6 63849780 63849963 -85667074 + L1M5 LINE L1 4096 4258 -1888 4 1072 227 351 115 14 chr6 63850448 63850743 -85666294 - L1MC4a LINE L1 -9 7873 7549 4 1072 583 343 39 5 chr6 63851060 63851265 -85665772 - ID_B1 SINE B4 -1 223 12 4 1072 9208 131 14 10 chr6 63851485 63853030 -85664007 - L1_Mur2 LINE L1 -1320 4557 3008 4 1072 1104 130 46 14 chr6 63853042 63853105 -85663932 - L1_Mur2 LINE L1 -3294 2583 2524 4 1072 399 21 0 0 chr6 63853105 63853153 -85663884 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1072 1104 130 46 14 chr6 63853153 63853307 -85663730 - L1_Mur2 LINE L1 -3354 2523 2360 4 1072 982 109 0 13 chr6 63853305 63853463 -85663574 - L1_Mur2 LINE L1 -4395 1482 1327 4 1072 326 204 119 30 chr6 63854118 63854219 -85662818 - MLT1A1 LTR MaLR -5 403 294 4 1072 1491 92 0 5 chr6 63854445 63854663 -85662374 - L1_Mus4 LINE L1 -5 6631 6415 4 1072 281 45 0 43 chr6 63854663 63854702 -85662335 + L1_Mus4 LINE L1 6346 6383 -253 4 1072 243 89 0 0 chr6 63855225 63855270 -85661767 - L1_Mus4 LINE L1 0 6636 6592 4 1072 1212 266 123 6 chr6 63855747 63856106 -85660931 + MTD LTR MaLR 1 401 -18 4 1072 311 361 62 54 chr6 63856733 63856862 -85660175 + ID_B1 SINE B4 83 212 -12 5 1072 693 284 0 6 chr6 63856981 63857151 -85659886 + MTD LTR MaLR 196 364 -55 5 1072 25 0 0 0 chr6 63857433 63857458 -85659579 + AT_rich Low_complexity Low_complexity 1 25 0 5 1072 985 159 56 46 chr6 63859374 63859684 -85657353 - RMER17C LTR ERVK 0 410 96 5 1072 1350 28 0 32 chr6 63859684 63859870 -85657167 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 5 1072 985 108 86 53 chr6 63859870 63859900 -85657137 - RMER17C LTR ERVK -315 95 85 5 1072 1620 0 0 0 chr6 63859900 63860080 -85656957 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1072 774 0 0 0 chr6 63860083 63860169 -85656868 + (GAGAA)n Simple_repeat Simple_repeat 1 86 0 5 1072 765 108 86 53 chr6 63860169 63860340 -85656697 - RMER17C LTR ERVK -224 186 3 5 1072 216 321 62 0 chr6 63860340 63860418 -85656619 + PB1D10 SINE Alu 22 104 -13 5 1072 459 0 0 0 chr6 63860419 63860470 -85656567 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 1072 226 200 0 35 chr6 63860589 63860646 -85656391 + (TGG)n Simple_repeat Simple_repeat 3 57 0 5 1072 180 191 22 11 chr6 63862578 63862668 -85654369 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1072 197 296 70 0 chr6 63863241 63863312 -85653725 - MIRb SINE MIR -19 249 174 5 1072 223 354 17 42 chr6 63863320 63863438 -85653599 - MIRb SINE MIR 0 268 154 5 1072 216 0 0 0 chr6 63863445 63863469 -85653568 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1072 225 0 0 0 chr6 63863821 63863846 -85653191 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1072 207 0 0 0 chr6 63864059 63864082 -85652955 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1072 3349 37 7 10 chr6 63864274 63864687 -85652350 - L1Md_F2 LINE L1 -2 6580 6169 5 1072 799 261 74 16 chr6 63864883 63865125 -85651912 + Lx7 LINE L1 7148 7403 -293 5 1072 200 224 0 20 chr6 63865191 63865217 -85651820 + polypurine Low_complexity Low_complexity 3 28 0 5 1072 999 124 17 0 chr6 63865217 63865394 -85651643 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1072 200 224 0 20 chr6 63865394 63865417 -85651620 + polypurine Low_complexity Low_complexity 29 51 0 5 1072 1169 92 0 10 chr6 63865417 63865625 -85651412 + (GGAA)n Simple_repeat Simple_repeat 1 206 0 5 1072 21 36 0 0 chr6 63865697 63865725 -85651312 + AT_rich Low_complexity Low_complexity 1 28 0 5 1072 30 27 0 0 chr6 63865762 63865799 -85651238 + AT_rich Low_complexity Low_complexity 1 37 0 5 1072 24 32 0 0 chr6 63865825 63865856 -85651181 + AT_rich Low_complexity Low_complexity 1 31 0 5 1072 23 33 0 0 chr6 63865922 63865952 -85651085 + AT_rich Low_complexity Low_complexity 1 30 0 5 1072 324 48 0 0 chr6 63866419 63866461 -85650576 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 1072 488 287 17 0 chr6 63866511 63866626 -85650411 - B3 SINE B2 -92 124 8 5 1072 318 26 0 0 chr6 63866630 63866669 -85650368 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1072 408 299 12 13 chr6 63866671 63866882 -85650155 - L1MA5 LINE L1 -364 5936 5660 5 1072 378 0 0 0 chr6 63867502 63867544 -85649493 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1072 409 139 41 41 chr6 63869054 63869226 -85647811 + (TAGA)n Simple_repeat Simple_repeat 2 173 0 5 1072 240 169 39 0 chr6 63869259 63869336 -85647701 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 5 1072 793 139 8 0 chr6 63869346 63869475 -85647562 - URR1B DNA MER1_type 0 225 96 5 1072 1317 186 104 14 chr6 63869477 63869755 -85647282 + RMER17B LTR ERVK 3 305 -653 5 1072 233 231 24 71 chr6 63869772 63869856 -85647181 + RMER17B LTR ERVK 879 958 0 5 1072 342 91 0 0 chr6 63870323 63870378 -85646659 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 5 1072 515 66 13 0 chr6 63870378 63870453 -85646584 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1072 2885 39 9 111 chr6 63872417 63872851 -85644186 + RLTR10 LTR ERVK 1 390 0 5 1072 7645 40 18 2 chr6 63872860 63873805 -85643232 + RLTR10-int LTR ERVK 39 998 -989 5 1072 381 258 39 15 chr6 63873869 63873999 -85643038 + RLTR10-int LTR ERVK 1462 1594 -5987 5 1072 8757 23 0 0 chr6 63874081 63875076 -85641961 + RLTR10-int LTR ERVK 990 1984 -3 5 1072 2875 42 9 111 chr6 63875078 63875512 -85641525 + RLTR10 LTR ERVK 1 390 0 5 1072 414 0 0 0 chr6 63875658 63875704 -85641333 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1072 1062 108 96 0 chr6 63875925 63876092 -85640945 + B2_Mm2 SINE B2 4 186 -9 5 1072 189 178 0 0 chr6 63876695 63876740 -85640297 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1072 759 165 94 61 chr6 63876746 63876927 -85640110 - Lx3C LINE L1 -11 6965 6779 5 1072 1662 194 0 0 chr6 63877050 63877380 -85639657 + L1_Mur1 LINE L1 699 1028 -5954 5 1072 21 0 0 0 chr6 63878009 63878030 -85639007 + AT_rich Low_complexity Low_complexity 1 21 0 5 1072 468 108 10 31 chr6 63878699 63878795 -85638242 + (TTTC)n Simple_repeat Simple_repeat 1 94 0 5 1072 4216 148 64 29 chr6 63878795 63879622 -85637415 - Lx2A1 LINE L1 -2 7006 6151 5 1072 436 35 34 45 chr6 63881128 63881217 -85635820 + (CAAAAA)n Simple_repeat Simple_repeat 1 88 0 5 1072 339 85 0 0 chr6 63881821 63881868 -85635169 + (T)n Simple_repeat Simple_repeat 1 47 0 5 1072 240 35 0 0 chr6 63882789 63882818 -85634219 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1072 637 301 0 0 chr6 63883766 63883899 -85633138 - Lx5 LINE L1 -122 6928 6796 5 1072 545 277 120 21 chr6 63883955 63884147 -85632890 + B3 SINE B2 6 216 0 5 1072 226 243 144 66 chr6 63884010 63884191 -85632846 - RLTR22_Mus LTR ERVK -964 844 650 5 1072 592 339 27 16 chr6 63884417 63884600 -85632437 - B3A SINE B2 -1 197 13 5 1072 228 67 0 0 chr6 63884620 63884650 -85632387 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1072 248 325 181 92 chr6 63884696 63885110 -85631927 - MER82 DNA MER2_type -7 646 196 5 1072 197 220 37 0 chr6 63885110 63885219 -85631818 + (TA)n Simple_repeat Simple_repeat 1 113 0 5 1072 414 253 10 10 chr6 63885818 63885914 -85631123 + PB1D9 SINE Alu 18 113 -7 5 1072 660 77 265 0 chr6 63885922 63886039 -85630998 + B1_Mus1 SINE Alu 1 148 0 5 1072 260 224 16 54 chr6 63886059 63886243 -85630794 + (TAA)n Simple_repeat Simple_repeat 2 178 0 5 1072 256 315 0 52 chr6 63887035 63887112 -85629925 + B4A SINE B4 83 155 -137 5 1072 374 282 84 3 chr6 63887047 63887163 -85629874 + B1F SINE Alu 10 142 -7 5 1072 302 45 23 0 chr6 63888573 63888617 -85628420 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1072 208 226 0 54 chr6 63888619 63888675 -85628362 + GA-rich Low_complexity Low_complexity 1 53 0 5 1072 183 340 101 40 chr6 63888762 63888961 -85628076 - MIR SINE MIR -26 236 26 5 1072 267 347 59 20 chr6 63889097 63889177 -85627860 + ID SINE ID 1 86 -138 5 1072 255 333 58 10 chr6 63889177 63889280 -85627757 + PB1D10 SINE Alu 2 109 -8 5 1072 303 337 80 53 chr6 63889447 63889635 -85627402 + Charlie13a DNA Charlie 565 757 -757 5 1072 385 278 76 19 chr6 63889834 63889992 -85627045 + Charlie13a DNA Charlie 822 988 -526 5 1072 360 297 12 72 chr6 63890104 63890271 -85626766 + HAL1-3A_ME LINE L1 2285 2441 -417 5 1072 24 0 0 0 chr6 63890815 63890839 -85626198 + AT_rich Low_complexity Low_complexity 1 24 0 5 1072 963 25 0 0 chr6 63890876 63890994 -85626043 + (TG)n Simple_repeat Simple_repeat 2 119 0 5 1072 366 23 0 0 chr6 63892240 63892283 -85624754 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1072 594 140 0 0 chr6 63892284 63892384 -85624653 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 1072 410 0 20 0 chr6 63892404 63892454 -85624583 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 5 1072 1191 58 5 122 chr6 63893148 63893362 -85623675 + L1_Mus2 LINE L1 6378 6566 0 5 1072 216 151 58 11 chr6 63894336 63894423 -85622614 + (TCTCTG)n Simple_repeat Simple_repeat 4 94 0 5 1072 30 27 0 0 chr6 63894955 63894992 -85622045 + AT_rich Low_complexity Low_complexity 1 37 0 5 1072 247 380 34 40 chr6 63895714 63895862 -85621175 + MamRep605 Unknown Unknown 613 759 -117 5 1072 1392 224 91 13 chr6 63896120 63896428 -85620609 - RMER1B Other Other -273 793 462 5 1072 903 199 67 29 chr6 63896483 63896721 -85620316 + RMER1B Other Other 809 1055 -11 5 1072 324 0 0 0 chr6 63896727 63896763 -85620274 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1072 21 0 0 0 chr6 63896771 63896792 -85620245 + AT_rich Low_complexity Low_complexity 1 21 0 5 1072 2043 131 0 21 chr6 63898456 63898792 -85618245 + Lx3A LINE L1 6652 6980 -1 5 1072 510 96 0 0 chr6 63898792 63898865 -85618172 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 5 1072 5931 190 40 17 chr6 63898869 63900183 -85616854 - Lx6 LINE L1 -128 5752 4409 5 1072 1519 243 49 12 chr6 63900174 63900582 -85616455 + Lx6 LINE L1 5765 6187 -1273 5 1072 1331 289 70 11 chr6 63900574 63901028 -85616009 + Lx6 LINE L1 6954 7434 -26 5 1072 378 0 0 0 chr6 63901610 63901652 -85615385 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1072 408 352 83 14 chr6 63901670 63901814 -85615223 - RSINE1 SINE B4 -9 156 3 5 1072 991 252 121 30 chr6 63902615 63902787 -85614250 - ORR1C2 LTR MaLR -14 370 171 5 1072 513 0 0 0 chr6 63902787 63902844 -85614193 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1072 991 252 121 30 chr6 63902844 63903010 -85614027 - ORR1C2 LTR MaLR -214 170 2 5 1072 4131 92 21 29 chr6 63903926 63904544 -85612493 - Lx2 LINE L1 0 6997 6385 5 1072 378 0 0 0 chr6 63904550 63904592 -85612445 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1072 226 340 9 91 chr6 63905943 63906053 -85610984 - RMER30 DNA MER1_type -2 200 100 5 1072 337 282 35 90 chr6 63906123 63906171 -85610866 - B1_Mur1 SINE Alu -13 136 96 5 1072 1063 197 31 18 chr6 63906171 63906393 -85610644 + URR1B DNA MER1_type 1 225 0 5 1072 337 282 35 90 chr6 63906393 63906488 -85610549 - B1_Mur1 SINE Alu -54 95 1 5 1072 30 45 0 0 chr6 63906668 63906712 -85610325 + AT_rich Low_complexity Low_complexity 1 44 0 5 1072 4904 228 94 11 chr6 63908316 63909437 -85607600 - Lx6 LINE L1 -1 7459 6246 5 1072 288 0 0 0 chr6 63909605 63909637 -85607400 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 5 1072 383 218 88 81 chr6 63909786 63909899 -85607138 - Lx6 LINE L1 -469 5771 5647 5 1072 1410 184 81 3 chr6 63910137 63910458 -85606579 - L1_Mur3 LINE L1 -3237 2643 2298 5 1072 1766 182 172 0 chr6 63910459 63910860 -85606177 + Lx6 LINE L1 5265 5734 -146 5 1072 561 155 41 0 chr6 63910909 63911006 -85606031 + Lx7 LINE L1 6735 6835 -861 5 1072 4906 260 58 34 chr6 63911006 63912628 -85604409 + Lx6 LINE L1 5738 7460 0 5 1072 285 29 0 0 chr6 63912778 63912812 -85604225 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 6 1072 312 200 0 0 chr6 63914479 63914554 -85602483 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1072 223 333 78 0 chr6 63915065 63915194 -85601843 + L3 LINE CR1 4103 4241 -248 6 1072 316 198 110 0 chr6 63915969 63916060 -85600977 - Lx8 LINE L1 0 7473 7373 6 1072 521 42 0 27 chr6 63916226 63916299 -85600738 + (TCTCCC)n Simple_repeat Simple_repeat 3 73 0 6 1072 209 125 25 0 chr6 63916451 63916491 -85600546 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 6 1072 228 35 0 0 chr6 63916523 63916552 -85600485 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1072 23 68 0 0 chr6 63916937 63916981 -85600056 + AT_rich Low_complexity Low_complexity 1 44 0 6 1072 351 0 0 0 chr6 63918308 63918347 -85598690 + (TTG)n Simple_repeat Simple_repeat 1 39 0 6 1072 1071 167 168 22 chr6 63918610 63918842 -85598195 + L1_Mus1 LINE L1 6302 6567 0 6 1072 249 57 0 0 chr6 63918966 63919001 -85598036 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1072 322 361 62 42 chr6 63919688 63919995 -85597042 + Lx8 LINE L1 7151 7463 -10 6 1072 345 282 119 7 chr6 63920710 63920853 -85596184 - MER45B DNA Tip100 -1 1039 881 6 1072 448 322 71 19 chr6 63920861 63921016 -85596021 + RSINE1 SINE B4 3 165 0 6 1072 408 216 198 8 chr6 63921082 63921208 -85595829 + B1_Mur4 SINE Alu 1 150 0 6 1072 272 360 114 7 chr6 63921254 63921534 -85595503 - MER45B DNA Tip100 -240 800 491 6 1072 407 278 0 0 chr6 63921577 63921667 -85595370 + PB1D10 SINE Alu 8 97 -20 6 1072 305 123 0 58 chr6 63921746 63921815 -85595222 - Lx9 LINE L1 -7 7637 7573 6 1072 283 179 11 103 chr6 63921816 63921868 -85595169 + Lx9 LINE L1 7331 7378 -266 6 1072 1380 106 109 8 chr6 63921868 63921938 -85595099 - L1_Mus3 LINE L1 -7 6631 6564 6 1072 183 42 0 0 chr6 63921938 63921962 -85595075 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 6 1072 1380 106 109 8 chr6 63921962 63922129 -85594908 - L1_Mus3 LINE L1 -75 6563 6371 6 1072 283 179 11 103 chr6 63922129 63922163 -85594874 + Lx9 LINE L1 7379 7409 -235 6 1072 474 321 94 19 chr6 63922305 63922518 -85594519 - MER45B DNA Tip100 -811 229 1 6 1072 641 301 63 8 chr6 63923470 63923738 -85593299 - B4A SINE B4 -6 286 4 6 1072 4930 75 20 18 chr6 63925015 63925697 -85591340 + L1Md_F2 LINE L1 5899 6582 0 6 1072 1547 190 78 65 chr6 63926131 63926503 -85590534 + ORR1C1 LTR MaLR 2 378 0 6 1072 283 271 49 76 chr6 63927133 63927277 -85589760 + MER5A1 DNA MER1_type 24 163 -3 6 1072 387 0 0 0 chr6 63928020 63928063 -85588974 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1072 339 25 0 0 chr6 63928063 63928102 -85588935 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1072 897 217 5 53 chr6 63928154 63928344 -85588693 + ORR1D1 LTR MaLR 1 181 -193 6 1072 545 125 21 0 chr6 63928344 63928440 -85588597 + (TCTCCC)n Simple_repeat Simple_repeat 3 100 0 6 1072 648 238 103 46 chr6 63928440 63928634 -85588403 + ORR1D1 LTR MaLR 175 379 -5 6 1072 594 75 0 0 chr6 63928771 63928851 -85588186 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 6 1072 389 78 40 65 chr6 63929096 63929220 -85587817 + T-rich Low_complexity Low_complexity 2 122 0 6 1072 300 335 60 60 chr6 63929982 63930108 -85586929 - RMER15 LTR ERVL -46 529 402 6 1072 1071 306 62 0 chr6 63930108 63930461 -85586576 + MTE2a LTR MaLR 3 377 -2 6 1072 300 335 60 60 chr6 63930461 63930518 -85586519 - RMER15 LTR ERVL -174 401 346 6 1072 203 299 15 0 chr6 63931626 63931693 -85585344 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 1072 23 0 0 0 chr6 63931850 63931873 -85585164 + AT_rich Low_complexity Low_complexity 1 23 0 6 1072 484 230 45 103 chr6 63932035 63932190 -85584847 + B4 SINE B4 76 221 -71 6 1072 1027 30 2 0 chr6 63932061 63932195 -85584842 + B1_Mm SINE Alu 13 147 0 6 1072 1543 177 114 20 chr6 63932304 63932465 -85584572 + ORR1C2 LTR MaLR 1 167 -217 6 1072 531 45 0 0 chr6 63932465 63932531 -85584506 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1072 1543 177 114 20 chr6 63932531 63932710 -85584327 + ORR1C2 LTR MaLR 168 373 -11 6 1072 1388 248 87 68 chr6 63933763 63934086 -85582951 + L1_Mur3 LINE L1 3263 3592 -2288 6 1072 896 110 73 0 chr6 63934086 63934222 -85582815 - B1_Mus2 SINE Alu -1 146 1 6 1072 1388 248 87 68 chr6 63934222 63934557 -85582480 + L1_Mur3 LINE L1 3593 3933 -1947 6 1072 2120 204 18 0 chr6 63934568 63934960 -85582077 - MTC LTR MaLR -20 401 3 6 1072 1124 290 32 25 chr6 63934980 63935510 -85581527 + L1_Mur3 LINE L1 3948 4481 -1399 6 1072 321 242 41 39 chr6 63935512 63935631 -85581406 + Lx8 LINE L1 6451 6545 -928 6 1072 505 334 78 27 chr6 63935662 63936034 -85581003 + Lx8 LINE L1 7075 7465 -8 6 1072 830 223 65 37 chr6 63936444 63936738 -85580299 - Lx9 LINE L1 -1 7643 7342 6 1072 1734 271 39 6 chr6 63936762 63937221 -85579816 + Lx9 LINE L1 6128 6752 -892 6 1072 500 126 0 11 chr6 63937410 63937498 -85579539 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 1072 301 208 91 0 chr6 63938183 63938260 -85578777 + LTR80A LTR ERVL 132 215 -368 6 1072 384 369 48 14 chr6 63938361 63938570 -85578467 + LTR80A LTR ERVL 368 583 0 6 1072 369 138 0 0 chr6 63938937 63938995 -85578042 + ORR1A2 LTR MaLR 1 58 -269 6 1072 3557 24 0 0 chr6 63938995 63939407 -85577630 + L1Md_F2 LINE L1 5174 5585 -298 6 1072 7907 41 11 15 chr6 63939408 63940408 -85576629 + L1Md_F2 LINE L1 5587 6582 0 6 1072 1695 132 41 19 chr6 63940431 63940702 -85576335 + ORR1A2 LTR MaLR 43 319 -8 6 1072 305 179 75 0 chr6 63941055 63941122 -85575915 - HAL1-2a_MD LINE L1 -598 2426 2355 6 1072 243 280 29 43 chr6 63941133 63941271 -85575766 - Lx8 LINE L1 -3 7470 7335 6 1072 714 138 214 0 chr6 63941259 63941418 -85575619 - Lx LINE L1 0 6654 6462 6 1072 611 272 150 82 chr6 63941422 63941763 -85575274 - RLTR9A LTR ERVK -4 364 1 6 1072 437 388 8 0 chr6 63942159 63942427 -85574610 - RNERVK23-int LTR ERVK -493 7724 7455 6 1072 11535 120 19 17 chr6 63942409 63943318 -85573719 - RMER16-int LTR ERVK -1068 4338 3425 6 1072 3384 33 2 0 chr6 63943318 63943713 -85573324 - MTA_Mm LTR MaLR 0 396 1 6 1072 15139 121 40 17 chr6 63943713 63945263 -85571774 - RMER16-int LTR ERVK -1982 3424 1830 6 1072 186 43 0 0 chr6 63945263 63945286 -85571751 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 6 1072 15139 121 40 17 chr6 63945286 63945549 -85571488 - RMER16-int LTR ERVK -3577 1829 1565 6 1072 207 0 0 0 chr6 63945652 63945675 -85571362 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 6 1072 834 82 72 36 chr6 63945675 63945803 -85571234 - B1_Mus1 SINE Alu -12 136 2 6 1072 525 222 20 55 chr6 63945888 63946062 -85570975 - RMER16-int LTR ERVK -4823 2583 2474 6 1072 5381 150 112 31 chr6 63946226 63947384 -85569653 - RMER16-int LTR ERVK -3838 1568 317 6 1072 214 82 0 58 chr6 63947531 63947583 -85569454 + (TTTTTG)n Simple_repeat Simple_repeat 1 49 0 6 1072 3680 71 0 4 chr6 63947595 63948077 -85568960 - L1_Mus1 LINE L1 0 6567 6088 6 1072 2719 51 29 0 chr6 63948077 63948428 -85568609 + L1_Mus1 LINE L1 5702 6062 -505 6 1072 225 0 0 0 chr6 63948436 63948461 -85568576 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1072 1057 288 179 5 chr6 63948796 63949243 -85567794 - Lx8 LINE L1 -258 7215 6691 6 1072 204 40 0 0 chr6 63950300 63950325 -85566712 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1072 591 330 31 28 chr6 63950343 63950633 -85566404 - B4 SINE B4 0 292 2 6 1072 318 322 71 39 chr6 63950654 63950909 -85566128 + L1MC5 LINE L1 7654 7916 -45 6 1072 402 21 0 0 chr6 63951024 63951071 -85565966 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1072 467 217 9 9 chr6 63951821 63951928 -85565109 - Lx7 LINE L1 -430 7266 7160 6 1072 214 272 31 61 chr6 63952074 63952172 -85564865 - MIRc SINE MIR -7 261 167 6 1072 183 299 163 16 chr6 63952549 63952678 -85564359 + L2a LINE L2 2395 2542 -877 6 1072 1055 155 5 16 chr6 63952923 63953113 -85563924 + URR1B DNA MER1_type 38 225 0 6 1072 213 331 181 34 chr6 63953215 63953540 -85563497 + L2a LINE L2 2977 3349 -77 6 1072 226 363 59 0 chr6 63953673 63953775 -85563262 - MIRc SINE MIR -98 170 63 6 1072 309 232 0 0 chr6 63954502 63954597 -85562440 + (TG)n Simple_repeat Simple_repeat 1 95 0 6 1072 261 0 0 0 chr6 63955004 63955033 -85562004 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1072 25 31 0 0 chr6 63955574 63955606 -85561431 + AT_rich Low_complexity Low_complexity 1 32 0 6 1072 22 56 0 0 chr6 63955995 63956031 -85561006 + AT_rich Low_complexity Low_complexity 1 36 0 6 1072 3362 79 6 21 chr6 63956111 63956577 -85560460 - L1_Mus1 LINE L1 -3 6564 6106 6 1072 33 25 0 0 chr6 63956651 63956691 -85560346 + AT_rich Low_complexity Low_complexity 1 40 0 6 1072 892 231 30 0 chr6 63956898 63957101 -85559936 + B3 SINE B2 1 209 -7 6 1072 285 75 0 0 chr6 63957836 63957876 -85559161 + (TTG)n Simple_repeat Simple_repeat 2 41 0 6 1072 215 350 87 40 chr6 63958283 63958456 -85558581 - MIRb SINE MIR -20 248 68 6 1072 587 217 418 25 chr6 63958573 63958814 -85558223 - ORR1B1 LTR MaLR 0 394 59 6 1072 2144 174 17 22 chr6 63958806 63959211 -85557826 - ORR1B1-int LTR MaLR -408 1555 1153 6 1072 417 325 59 84 chr6 63960112 63960434 -85556603 - RLTR25A LTR ERVK -789 314 1 6 1072 1936 188 34 122 chr6 63960434 63960961 -85556076 - ORR1B1-int LTR MaLR -809 1154 675 6 1072 2320 104 140 34 chr6 63960961 63961397 -85555640 - RLTR45 LTR ERVK 0 482 1 6 1072 1936 188 34 122 chr6 63961397 63961457 -85555580 - ORR1B1-int LTR MaLR -1289 674 619 6 1072 3214 188 17 35 chr6 63961504 63962155 -85554882 - ORR1B1-int LTR MaLR -1324 639 1 6 1072 2334 167 10 0 chr6 63962155 63962545 -85554492 - ORR1B1 LTR MaLR 0 394 1 6 16 5248 68 16 3 chr6 63962658 63963342 -85553695 - L1Md_F2 LINE L1 -12 6570 5878 6 1073 2388 18 0 4 chr6 63963342 63963621 -85553416 + L1Md_T LINE L1 5309 5586 -297 6 1073 8877 8 0 4 chr6 63963621 63964621 -85552416 + L1Md_T LINE L1 5587 6582 0 6 1073 291 304 29 19 chr6 63964648 63964752 -85552285 + LTR33 LTR ERVL 361 465 -50 6 1073 180 158 0 0 chr6 63964957 63964995 -85552042 + A-rich Low_complexity Low_complexity 1 38 0 6 1073 320 0 25 0 chr6 63965069 63965109 -85551928 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1073 233 298 87 87 chr6 63965797 63965970 -85551067 + MLT1D LTR MaLR 306 478 -27 6 1073 275 52 69 0 chr6 63966003 63966061 -85550976 + (TTG)n Simple_repeat Simple_repeat 2 63 0 6 1073 6719 149 25 8 chr6 63967618 63969631 -85547406 + Lx LINE L1 4611 6654 0 6 1073 654 13 0 0 chr6 63970508 63970583 -85546454 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1073 453 36 0 0 chr6 63970583 63970637 -85546400 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1073 680 195 156 34 chr6 63970828 63971184 -85545853 - RMER6B LTR ERVK -7 454 1 6 1073 189 0 0 0 chr6 63971835 63971856 -85545181 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1073 232 295 33 0 chr6 63972501 63972562 -85544475 + ID4_ SINE ID 1 63 -20 6 1073 23 33 0 0 chr6 63972797 63972827 -85544210 + AT_rich Low_complexity Low_complexity 1 30 0 6 1073 4374 228 67 51 chr6 63973489 63974748 -85542289 - Lx9 LINE L1 -8 7636 6358 6 1073 2217 114 38 0 chr6 63974759 63975074 -85541963 + ORR1A2 LTR MaLR 1 327 0 6 1073 735 123 0 0 chr6 63976668 63976790 -85540247 + (TTCC)n Simple_repeat Simple_repeat 2 123 0 6 1073 628 283 85 103 chr6 63977473 63978046 -85538991 - RLTR25B LTR ERVK -4 1024 450 6 1073 941 218 74 51 chr6 63977711 63977947 -85539090 - ORR1A3-int LTR MaLR -956 1007 658 7 1073 1363 147 59 63 chr6 63977947 63978201 -85538836 - MT2B LTR ERVL -314 287 35 7 1073 941 218 74 51 chr6 63978201 63978306 -85538731 - ORR1A3-int LTR MaLR -956 657 499 7 1073 1098 138 11 11 chr6 63978232 63978423 -85538614 - RLTR25B LTR ERVK -583 520 330 6 1073 9518 152 24 11 chr6 63978479 63981262 -85535775 - Lx4A LINE L1 0 7058 4228 7 1073 11378 160 20 2 chr6 63981259 63982460 -85534577 + Lx2 LINE L1 3887 5097 -786 7 1073 492 18 0 0 chr6 63982460 63982517 -85534520 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 7 1073 11378 144 13 8 chr6 63982517 63984042 -85532995 + Lx2 LINE L1 5098 6648 -349 7 1073 1167 160 14 10 chr6 63984043 63984251 -85532786 + Lx2 LINE L1 6788 6996 -1 7 1073 6484 129 77 42 chr6 63984264 63984967 -85532070 - Lx4A LINE L1 -1647 4230 3484 7 1073 250 24 71 0 chr6 63984967 63985009 -85532028 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 7 1073 6484 129 77 42 chr6 63985009 63985639 -85531398 - Lx4A LINE L1 -2394 3483 2850 7 1073 432 0 0 0 chr6 63985639 63985687 -85531350 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1073 1187 175 4 0 chr6 63985695 63985923 -85531114 - Lx4A LINE L1 -3837 2040 1812 7 1073 4011 171 53 1 chr6 63985924 63986751 -85530286 - Lx4A LINE L1 -5948 1138 379 7 1073 1660 196 12 32 chr6 63986752 63987090 -85529947 - RLTR25B LTR ERVK -697 331 1 6 1073 2055 190 31 58 chr6 63987336 63987974 -85529063 - RMER6A LTR ERVK 0 756 1 7 1073 22 0 0 0 chr6 63988395 63988417 -85528620 + AT_rich Low_complexity Low_complexity 1 22 0 7 1073 243 240 0 0 chr6 63989003 63989053 -85527984 + tRNA-Ala-GCA tRNA tRNA 19 68 -7 7 1073 1110 90 0 0 chr6 63989245 63989389 -85527648 - B1_Mm SINE Alu 0 147 4 7 1073 8031 29 14 13 chr6 63990714 63991358 -85525679 - L1Md_F3 LINE L1 -11 6573 5929 7 1073 4434 14 0 0 chr6 63991358 63991851 -85525186 - MT2_Mm LTR ERVL 0 493 1 7 1073 8031 32 13 12 chr6 63991851 63992232 -85524805 - L1Md_F3 LINE L1 -656 5928 5547 7 1073 270 369 29 10 chr6 63992661 63992765 -85524272 - LTR16C LTR ERVL 0 489 384 7 1073 216 0 0 0 chr6 63992841 63992865 -85524172 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1073 236 260 61 30 chr6 63992918 63993017 -85524020 - LTR45C LTR ERV1 -10 529 428 7 1073 664 273 29 5 chr6 63995535 63995745 -85521292 - B3 SINE B2 0 216 2 7 1073 293 232 40 0 chr6 63995747 63995846 -85521191 + (TA)n Simple_repeat Simple_repeat 2 104 0 7 1073 22 35 0 0 chr6 63995892 63995921 -85521116 + AT_rich Low_complexity Low_complexity 1 29 0 7 1073 195 236 0 6 chr6 63996029 63996077 -85520960 + MIR SINE MIR 218 268 0 7 1073 293 316 11 0 chr6 63996863 63996958 -85520079 + B4A SINE B4 2 97 -195 7 1073 656 226 0 15 chr6 63997043 63997178 -85519859 + B1_Mur3 SINE Alu 1 133 -16 7 1073 625 309 58 0 chr6 63997218 63997406 -85519631 + B3 SINE B2 4 202 -14 7 1073 946 125 14 0 chr6 63997424 63997568 -85519469 + B1_Mus1 SINE Alu 1 146 -2 7 1073 294 73 0 0 chr6 63997572 63997613 -85519424 + (CATA)n Simple_repeat Simple_repeat 2 42 0 7 1073 258 95 0 0 chr6 63997651 63997693 -85519344 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1073 195 69 0 0 chr6 63998558 63998587 -85518450 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1073 1110 160 81 21 chr6 63998860 63998918 -85518119 - RLTR20A LTR ERVK -35 506 437 7 1073 836 10 10 0 chr6 63998918 63999019 -85518018 + (CA)n Simple_repeat Simple_repeat 2 103 0 7 1073 1110 244 61 58 chr6 63999019 63999521 -85517516 - RLTR20A LTR ERVK -103 475 16 7 1073 21 0 0 0 chr6 64001390 64001411 -85515626 + AT_rich Low_complexity Low_complexity 1 21 0 1 1073 201 158 0 0 chr6 64001516 64001554 -85515483 + A-rich Low_complexity Low_complexity 1 38 0 2 1073 317 270 11 33 chr6 64001554 64001646 -85515391 - MTEb LTR MaLR -28 351 262 3 1073 647 46 11 0 chr6 64001656 64001743 -85515294 + (TG)n Simple_repeat Simple_repeat 2 89 0 4 1073 379 265 24 0 chr6 64001750 64001833 -85515204 - B3 SINE B2 -62 154 70 5 1073 719 257 7 0 chr6 64001927 64002075 -85514962 - MTEb LTR MaLR -226 153 5 3 1073 453 81 0 0 chr6 64004221 64004283 -85512754 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1073 23 54 0 0 chr6 64004411 64004448 -85512589 + AT_rich Low_complexity Low_complexity 1 37 0 7 1073 1315 79 40 0 chr6 64004541 64004718 -85512319 + B2_Mm2 SINE B2 1 184 -11 8 1073 26 64 0 0 chr6 64004896 64004943 -85512094 + AT_rich Low_complexity Low_complexity 1 47 0 9 1073 303 169 0 0 chr6 64005274 64005345 -85511692 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1073 238 300 17 145 chr6 64005388 64005505 -85511532 + MT2B LTR ERVL 134 235 -366 1 1073 303 185 11 21 chr6 64006964 64007058 -85509979 + GA-rich Low_complexity Low_complexity 2 94 0 1 1073 287 215 45 15 chr6 64007083 64007149 -85509888 - RMER10A LTR ERVL -357 85 18 1 1073 204 40 0 0 chr6 64008932 64008957 -85508080 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1073 1710 147 48 40 chr6 64012934 64013374 -85503663 - RMER17C LTR ERVK -519 439 16 1 1073 197 65 0 31 chr6 64014659 64014667 -85502370 + (TTTC)n Simple_repeat Simple_repeat 1 8 0 1 1073 507 33 0 0 chr6 64014667 64014728 -85502309 + (TTCCC)n Simple_repeat Simple_repeat 3 63 0 1 1073 197 65 0 31 chr6 64014728 64014751 -85502286 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 1073 378 0 0 0 chr6 64015068 64015110 -85501927 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1073 37589 11 2 8 chr6 64015608 64020746 -85496291 + L1Md_T LINE L1 423 5527 -356 2 1073 344 37 19 0 chr6 64020746 64020800 -85496237 + L1Md_T LINE L1 6527 6581 -1 2 1073 692 214 7 35 chr6 64021985 64022130 -85494907 - B1_Mur3 SINE Alu -6 143 3 2 1073 35 78 0 0 chr6 64022690 64022767 -85494270 + AT_rich Low_complexity Low_complexity 1 77 0 2 1073 401 333 138 44 chr6 64023027 64023504 -85493533 + L3 LINE CR1 3599 4120 -369 2 1073 342 0 0 0 chr6 64024268 64024306 -85492731 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1073 1194 80 0 0 chr6 64024800 64024963 -85492074 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 2 1073 23 0 0 0 chr6 64028371 64028394 -85488643 + AT_rich Low_complexity Low_complexity 1 23 0 2 1073 22 35 0 0 chr6 64028985 64029014 -85488023 + AT_rich Low_complexity Low_complexity 1 29 0 2 1073 441 0 0 0 chr6 64029021 64029070 -85487967 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1073 247 284 106 56 chr6 64029077 64029219 -85487818 - Lx8 LINE L1 -42 7431 7283 2 1073 1878 279 85 16 chr6 64029272 64029988 -85487049 - Lx8 LINE L1 -625 6848 6083 2 1073 884 237 48 0 chr6 64030352 64030580 -85486457 - Lx8 LINE L1 -1867 5829 5591 2 1073 310 308 108 18 chr6 64030607 64030673 -85486364 - L1_Rod LINE L1 -4334 1513 1442 3 1073 195 114 0 0 chr6 64030673 64030708 -85486329 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1073 310 308 108 18 chr6 64030708 64030919 -85486118 - L1_Rod LINE L1 -4406 1441 1211 3 1073 186 254 85 0 chr6 64030999 64031058 -85485979 - L4 LINE RTE -1239 790 727 3 1073 2473 114 89 27 chr6 64031185 64031599 -85485438 - Lx3A LINE L1 -8 6973 6534 3 1073 327 214 51 7 chr6 64032427 64032526 -85484511 - RMER4B LTR ERVK -57 528 356 3 1073 1893 201 78 19 chr6 64032494 64032905 -85484132 - RMER4B LTR ERVK -118 467 33 3 1073 585 76 0 0 chr6 64032905 64032984 -85484053 + (TC)n Simple_repeat Simple_repeat 2 80 0 3 1073 790 82 6 177 chr6 64032990 64033083 -85483954 - B1_Mus1 SINE Alu -12 136 58 3 1073 2747 91 8 0 chr6 64033083 64033480 -85483557 + L1_Mus3 LINE L1 6237 6636 -2 3 1073 790 82 6 177 chr6 64033480 64033550 -85483487 - B1_Mus1 SINE Alu -91 57 1 3 1073 2225 188 25 21 chr6 64033703 64034196 -85482841 - RLTR31_Mm LTR ERVK -31 530 1 3 1073 23 33 0 0 chr6 64034888 64034918 -85482119 + AT_rich Low_complexity Low_complexity 1 30 0 3 1073 1277 244 11 0 chr6 64035375 64035654 -85481383 + Lx9 LINE L1 6645 6926 -718 4 1073 393 338 269 14 chr6 64036171 64036386 -85480651 + B4A SINE B4 11 280 -12 4 1073 555 16 0 0 chr6 64036402 64036466 -85480571 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1073 261 163 41 0 chr6 64036845 64036894 -85480143 - RLTR16 LTR ERVK -454 51 1 4 1073 1066 214 116 4 chr6 64036974 64037242 -85479795 - MTC LTR MaLR -122 299 2 4 1073 1125 249 149 15 chr6 64037354 64037689 -85479348 - Lx5 LINE L1 0 7050 6671 4 1073 6777 117 6 0 chr6 64037658 64038648 -85478389 - L1_Mus4 LINE L1 -49 6587 5592 4 1073 2414 120 69 0 chr6 64038644 64038929 -85478108 - L1VL4 LINE L1 -2265 1294 1009 4 1073 665 12 0 12 chr6 64038929 64039012 -85478025 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 4 1073 3513 120 69 0 chr6 64039012 64039087 -85477950 - L1VL4 LINE L1 -2551 1008 915 4 1073 207 0 0 0 chr6 64039087 64039110 -85477927 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1073 3513 192 58 11 chr6 64039110 64039784 -85477253 - L1VL4 LINE L1 -5388 914 206 4 1073 25 31 0 0 chr6 64039860 64039892 -85477145 + AT_rich Low_complexity Low_complexity 1 32 0 5 1073 488 271 0 0 chr6 64040830 64040937 -85476100 - B1_Mur1 SINE Alu -28 121 15 5 1073 415 286 8 43 chr6 64040966 64041083 -85475954 + RSINE1 SINE B4 20 132 -33 5 1073 247 341 53 42 chr6 64041332 64041427 -85475610 - LTR80A LTR ERVL -85 498 403 5 1073 200 333 39 19 chr6 64041702 64041806 -85475231 - MIR SINE MIR -86 176 71 5 1073 4367 116 64 3 chr6 64042821 64043512 -85473525 + Lx LINE L1 5920 6652 -2 5 1073 28 29 0 0 chr6 64043606 64043641 -85473396 + AT_rich Low_complexity Low_complexity 1 35 0 5 1073 252 0 0 0 chr6 64045845 64045873 -85471164 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1073 2278 234 28 40 chr6 64046188 64046763 -85470274 - Lx5 LINE L1 0 7050 6483 5 1073 250 311 0 26 chr6 64048109 64048127 -85468910 + B4A SINE B4 72 87 -205 5 1073 298 288 0 0 chr6 64048127 64048193 -85468844 + PB1D10 SINE Alu 3 68 -49 6 1073 252 264 0 0 chr6 64048324 64048411 -85468626 + (TG)n Simple_repeat Simple_repeat 1 87 0 6 1073 539 146 10 10 chr6 64049545 64049642 -85467395 - URR1B DNA MER1_type 0 225 129 6 1073 21 57 0 0 chr6 64049651 64049686 -85467351 + AT_rich Low_complexity Low_complexity 1 35 0 6 1073 257 0 0 29 chr6 64049842 64049876 -85467161 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6 1073 728 313 92 67 chr6 64050190 64050655 -85466382 + MLT2B1 LTR ERVL 3 479 -41 6 1073 579 282 96 0 chr6 64050669 64050825 -85466212 - B3 SINE B2 -7 209 39 6 1073 378 0 0 0 chr6 64050968 64051010 -85466027 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 6 1073 3706 229 104 20 chr6 64051150 64052106 -85464931 - Lx7 LINE L1 -99 7597 6562 6 1073 979 51 29 0 chr6 64053163 64053300 -85463737 + L1_Mus2 LINE L1 6426 6566 0 6 1073 6582 19 1 0 chr6 64054529 64055286 -85461751 - L1Md_A LINE L1 -3 6579 5822 7 1073 1070 81 0 0 chr6 64055286 64055422 -85461615 - B1_Mm SINE Alu -11 136 1 7 1073 744 336 57 53 chr6 64056763 64057219 -85459818 - MT2A LTR ERVL -71 462 5 7 1073 202 87 0 42 chr6 64057781 64057829 -85459208 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 7 1073 1136 43 7 0 chr6 64057829 64057969 -85459068 - B1_Mm SINE Alu -5 142 2 7 1073 243 351 102 53 chr6 64058061 64058326 -85458711 - ORR1D1 LTR MaLR -4 370 93 7 1073 1223 278 45 32 chr6 64058463 64058865 -85458172 + MTD LTR MaLR 9 415 -4 7 1073 22 0 0 0 chr6 64059439 64059461 -85457576 + AT_rich Low_complexity Low_complexity 1 22 0 7 1073 492 324 60 49 chr6 64059811 64060077 -85456960 + ORR1E LTR MaLR 3 271 -88 7 1073 7600 98 2 5 chr6 64060931 64061978 -85455059 + Lx LINE L1 5607 6650 -4 7 1073 205 19 0 143 chr6 64062569 64062632 -85454405 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 8 1073 26 74 0 0 chr6 64062662 64062716 -85454321 + AT_rich Low_complexity Low_complexity 1 54 0 8 1073 21 0 0 0 chr6 64063066 64063087 -85453950 + AT_rich Low_complexity Low_complexity 1 21 0 8 1073 25 0 0 0 chr6 64063145 64063170 -85453867 + AT_rich Low_complexity Low_complexity 1 25 0 8 1073 577 112 0 0 chr6 64063440 64063520 -85453517 + Lx4A LINE L1 6560 6639 -419 8 1073 440 345 74 33 chr6 64063629 64063872 -85453165 - L4 LINE RTE -1340 689 437 8 1073 522 0 0 0 chr6 64064997 64065055 -85451982 + (TC)n Simple_repeat Simple_repeat 1 58 0 8 1073 191 323 51 20 chr6 64065710 64065808 -85451229 - L2c LINE L2 -44 3343 3243 8 1073 415 335 49 129 chr6 64065811 64066137 -85450900 - MLT1B LTR MaLR -19 371 72 8 1073 265 306 102 0 chr6 64066199 64066297 -85450740 - Tigger5 DNA MER2_type -8 2398 2291 8 1073 412 322 58 0 chr6 64066319 64066440 -85450597 - Tigger5 DNA MER2_type -2189 217 90 8 1073 200 292 168 40 chr6 64067183 64067308 -85449729 - MER5B DNA MER1_type 0 178 38 9 1073 953 118 26 26 chr6 64067308 64067500 -85449537 + L1_Mus3 LINE L1 6447 6638 0 9 1073 707 93 19 0 chr6 64067509 64067617 -85449420 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 9 1073 252 302 151 0 chr6 64068715 64068801 -85448236 - PB1D10 SINE Alu -10 107 9 9 1073 1136 187 246 22 chr6 64069353 64069714 -85447323 - RMER10A LTR ERVL 0 442 1 9 1073 1120 104 58 0 chr6 64071313 64071486 -85445551 - L1Md_F2 LINE L1 -12 6570 6388 9 1073 255 261 66 38 chr6 64072213 64072396 -85444641 - L1MEg LINE L1 -1121 5727 5540 9 1073 420 291 89 0 chr6 64072524 64072703 -85444334 - L1MEg LINE L1 -1487 5361 5167 9 1073 25 31 0 0 chr6 64072709 64072741 -85444296 + AT_rich Low_complexity Low_complexity 1 32 0 9 1073 369 0 0 0 chr6 64072789 64072830 -85444207 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1073 227 337 78 10 chr6 64072830 64072932 -85444105 - RSINE1 SINE B4 -46 119 11 9 1073 306 286 82 0 chr6 64072932 64073103 -85443934 - L1MEg LINE L1 -1674 5174 4990 9 1073 363 270 110 7 chr6 64073175 64073413 -85443624 - L1MEg LINE L1 -4333 2516 2144 9 1073 434 350 20 66 chr6 64073428 64073624 -85443413 + B3A SINE B2 4 190 -26 1 1073 190 312 49 24 chr6 64074695 64074777 -85442260 + L2a LINE L2 3343 3426 0 1 1073 478 282 77 31 chr6 64075003 64075197 -85441840 + MER58A DNA MER1_type 16 218 -6 1 1073 23 78 0 0 chr6 64076382 64076433 -85440604 + AT_rich Low_complexity Low_complexity 1 51 0 1 1073 328 290 178 0 chr6 64076990 64077097 -85439940 + B1_Mur2 SINE Alu 3 128 -21 1 1073 305 333 99 7 chr6 64077101 64077243 -85439794 + HAL1-3A_ME LINE L1 2284 2438 -420 1 1073 351 0 0 0 chr6 64077243 64077282 -85439755 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 1 1073 22 0 0 0 chr6 64079328 64079350 -85437687 + AT_rich Low_complexity Low_complexity 1 22 0 1 1073 255 149 0 0 chr6 64079350 64079397 -85437640 - Lx4A LINE L1 -3 7055 7009 1 1073 5277 233 78 28 chr6 64079818 64082047 -85434990 - Lx9 LINE L1 -1 7643 5156 1 1073 2336 233 75 86 chr6 64082048 64083099 -85433938 - Lx9 LINE L1 -817 5030 3991 1 1073 446 235 52 0 chr6 64083099 64083214 -85433823 - Lx9 LINE L1 -2281 3566 3446 1 1073 781 295 95 3 chr6 64083212 64083518 -85433519 - L1_Rod LINE L1 -6778 394 61 1 1073 251 301 0 14 chr6 64083688 64083762 -85433275 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1073 302 318 0 12 chr6 64084693 64084779 -85432258 - ID_B1 SINE B4 -52 172 88 1 1073 809 203 0 20 chr6 64085443 64085594 -85431443 + B1_Mur1 SINE Alu 1 148 -1 1 1073 649 314 23 6 chr6 64085616 64085792 -85431245 + B3A SINE B2 4 182 -16 1 1073 432 0 0 0 chr6 64085795 64085843 -85431194 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1073 1407 70 0 21 chr6 64086882 64087073 -85429964 + B2_Mm2 SINE B2 1 187 -8 1 1073 239 55 55 18 chr6 64087454 64087509 -85429528 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 1 1073 2106 161 42 18 chr6 64090081 64090462 -85426575 + ORR1B1 LTR MaLR 1 390 -4 1 1073 696 24 0 0 chr6 64090953 64091035 -85426002 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1 1073 931 171 0 7 chr6 64091035 64091182 -85425855 - B1_Mur4 SINE Alu -1 149 4 1 1073 510 256 0 0 chr6 64091707 64091887 -85425150 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 1 1073 390 278 69 50 chr6 64091962 64092121 -85424916 + RSINE1 SINE B4 4 165 0 1 1073 21 0 0 0 chr6 64092193 64092214 -85424823 + AT_rich Low_complexity Low_complexity 1 21 0 1 1073 372 77 0 0 chr6 64092218 64092270 -85424767 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1073 207 0 0 0 chr6 64092392 64092415 -85424622 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1 1073 1111 124 10 5 chr6 64092415 64092600 -85424437 - Lx3A LINE L1 -10 6971 6786 1 1073 1160 115 11 6 chr6 64092781 64092936 -85424101 + B2_Mm2 SINE B2 1 155 -40 1 1073 197 0 71 0 chr6 64092936 64092964 -85424073 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1 1073 1160 115 11 6 chr6 64092964 64092983 -85424054 + B2_Mm2 SINE B2 156 176 -19 1 1073 213 159 0 0 chr6 64093837 64093881 -85423156 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 134 897 246 11 0 chr6 64094022 64094209 -85422828 + B3 SINE B2 26 214 -2 1 1074 589 299 19 33 chr6 64094340 64094554 -85422483 + B3 SINE B2 1 211 -5 1 1074 190 282 125 34 chr6 64096284 64096372 -85420665 + MIRb SINE MIR 99 194 -74 1 1074 1880 294 52 77 chr6 64096544 64097417 -85419620 + Lx9 LINE L1 6518 7481 -163 1 1074 221 0 35 0 chr6 64097417 64097446 -85419591 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1 1074 1546 320 57 82 chr6 64097446 64097562 -85419475 + Lx9 LINE L1 7352 7472 -1 1 1074 27 29 0 0 chr6 64098557 64098591 -85418446 + AT_rich Low_complexity Low_complexity 1 34 0 1 1074 24 0 0 0 chr6 64099443 64099467 -85417570 + AT_rich Low_complexity Low_complexity 1 24 0 1 1074 254 265 48 12 chr6 64099701 64099785 -85417252 - RLTR24 LTR ERV1 -442 87 1 1 1074 420 258 24 36 chr6 64099822 64099987 -85417050 + CT-rich Low_complexity Low_complexity 3 165 0 1 1074 210 37 0 0 chr6 64100118 64100145 -85416892 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1074 255 193 0 0 chr6 64100145 64100233 -85416804 + GA-rich Low_complexity Low_complexity 1 88 0 1 1074 376 297 67 17 chr6 64100284 64100404 -85416633 + MT2A LTR ERVL 6 131 -402 1 1074 373 297 11 0 chr6 64100454 64100545 -85416492 + MT2A LTR ERVL 432 523 -61 1 1074 313 127 21 121 chr6 64100593 64100675 -85416362 + MT2A LTR ERVL 521 601 0 1 1074 204 262 0 0 chr6 64100743 64100785 -85416252 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 1 1074 474 345 54 11 chr6 64100787 64101065 -85415972 - B4A SINE B4 -2 290 1 1 1074 498 293 129 88 chr6 64101117 64101435 -85415602 - RMER15 LTR ERVL 0 575 245 1 1074 23 0 0 0 chr6 64101919 64101942 -85415095 + AT_rich Low_complexity Low_complexity 1 23 0 1 1074 452 353 88 0 chr6 64101954 64102090 -85414947 - RSINE1 SINE B4 -14 151 4 1 1074 277 272 292 24 chr6 64102560 64102729 -85414308 - MLT1A0 LTR MaLR -151 223 10 1 1074 216 186 0 23 chr6 64103134 64103178 -85413859 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1074 25 0 0 0 chr6 64103225 64103250 -85413787 + AT_rich Low_complexity Low_complexity 1 25 0 1 1074 285 303 70 114 chr6 64103851 64104052 -85412985 - LTR16C LTR ERVL -29 460 269 1 1074 21 0 0 0 chr6 64104360 64104381 -85412656 + AT_rich Low_complexity Low_complexity 1 21 0 1 1074 207 204 0 0 chr6 64104438 64104482 -85412555 + T-rich Low_complexity Low_complexity 1 44 0 1 1074 2071 111 12 12 chr6 64104489 64104826 -85412211 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1074 55201 27 8 5 chr6 64104828 64111276 -85405761 - IAPEz-int LTR ERVK -2 6479 8 1 1074 2071 111 12 12 chr6 64111276 64111613 -85405424 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1074 2371 50 7 26 chr6 64111613 64111923 -85405114 - L1Md_F3 LINE L1 -26 6558 6255 1 1074 850 213 37 14 chr6 64112003 64112217 -85404820 - Lx5 LINE L1 -3 7047 6829 1 1074 1540 195 11 108 chr6 64113928 64114365 -85402672 - RMER17C LTR ERVK 0 410 16 1 1074 400 273 50 50 chr6 64115134 64115273 -85401764 - B1_Mur2 SINE Alu -9 140 2 1 1074 450 0 0 0 chr6 64115279 64115329 -85401708 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1074 22 35 0 0 chr6 64115363 64115392 -85401645 + AT_rich Low_complexity Low_complexity 1 29 0 1 1074 2886 160 93 28 chr6 64115830 64116402 -85400635 + RLTR18 LTR ERVK 3 611 -5 1 1074 26 64 0 0 chr6 64116759 64116806 -85400231 + AT_rich Low_complexity Low_complexity 1 47 0 1 1074 534 31 0 0 chr6 64117307 64117371 -85399666 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1074 438 130 3 102 chr6 64118796 64118964 -85398073 + Lx2A LINE L1 6872 7007 -1 1 1074 2664 257 94 44 chr6 64119326 64119439 -85397598 - Lx7 LINE L1 -1 7695 7589 1 1074 502 59 23 23 chr6 64119439 64119526 -85397511 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 1 1074 2664 257 94 44 chr6 64119526 64119553 -85397484 - Lx7 LINE L1 -108 7588 7561 1 1074 1153 68 0 7 chr6 64119553 64119701 -85397336 + B1_Mm SINE Alu 1 147 0 1 1074 2664 257 94 44 chr6 64119701 64120632 -85396405 - Lx7 LINE L1 -136 7560 6569 1 1074 2880 31 2 167 chr6 64121156 64121623 -85395414 - RLTR10 LTR ERVK 0 390 1 1 1074 8384 14 1 2 chr6 64121625 64122619 -85394418 - RLTR10-int LTR ERVK -3 1984 992 1 1074 354 308 19 19 chr6 64122946 64123105 -85393932 - IAP-d-int LTR ERVK -2848 3694 3536 1 1074 6550 37 8 35 chr6 64123225 64124104 -85392933 - RLTR10-int LTR ERVK -1130 857 3 1 1074 2877 34 2 163 chr6 64124106 64124571 -85392466 - RLTR10 LTR ERVK 0 390 1 1 1074 305 320 28 114 chr6 64125864 64126153 -85390884 + L2a LINE L2 3157 3420 -6 1 1074 356 211 21 128 chr6 64126390 64126531 -85390506 + MT2B2 LTR ERVL 151 276 -308 1 1074 713 220 0 28 chr6 64126413 64126558 -85390479 + B1_Mur3 SINE Alu 9 149 0 1 1074 243 0 0 0 chr6 64126564 64126591 -85390446 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 1 1074 282 87 0 0 chr6 64126692 64126738 -85390299 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 1 1074 1035 194 75 17 chr6 64127724 64127965 -85389072 + Lx3C LINE L1 6719 6973 -3 1 1074 9006 25 0 0 chr6 64127967 64129748 -85387289 - L1Md_T LINE L1 -1 6581 4800 1 1074 252 0 0 0 chr6 64131752 64131780 -85385257 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1074 21 71 0 0 chr6 64131879 64131921 -85385116 + AT_rich Low_complexity Low_complexity 1 42 0 1 1074 483 18 0 0 chr6 64132560 64132616 -85384421 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1074 530 301 54 7 chr6 64132618 64132765 -85384272 - B3A SINE B2 -41 157 4 1 1074 15739 166 24 3 chr6 64133228 64136415 -85380622 - L1_Mm LINE L1 -984 4899 1647 1 1074 490 133 11 22 chr6 64136415 64136507 -85380530 + RLTR9C LTR ERVK 303 393 0 1 1074 1672 252 43 63 chr6 64137023 64137069 -85379968 - Lx9 LINE L1 -1 7643 7598 1 1074 2781 83 55 5 chr6 64137069 64137470 -85379567 - BGLII LTR ERVK 0 421 1 1 1074 1672 252 43 63 chr6 64137470 64138188 -85378849 - Lx9 LINE L1 -47 7597 6894 1 1074 956 295 34 8 chr6 64139562 64139825 -85377212 + ORR1D2 LTR MaLR 1 270 -100 1 1074 1361 212 22 11 chr6 64139855 64140127 -85376910 + MTC LTR MaLR 142 416 -5 1 1074 405 0 0 0 chr6 64140231 64140276 -85376761 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1074 1393 206 66 45 chr6 64140278 64140671 -85376366 - MT2A LTR ERVL -58 543 2 1 1074 1435 299 97 52 chr6 64140945 64141675 -85375362 - Lx8 LINE L1 -9 7464 6702 1 1074 4448 122 17 10 chr6 64141676 64142385 -85374652 + Lx LINE L1 5924 6637 -17 1 1074 198 0 0 0 chr6 64142387 64142409 -85374628 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 1074 1155 311 85 56 chr6 64142416 64142709 -85374328 - L1_Mur3 LINE L1 -12 5868 5566 1 1074 1327 258 25 11 chr6 64142709 64143074 -85373963 - ORR1D1 LTR MaLR 0 374 5 1 1074 1155 311 85 56 chr6 64143074 64143599 -85373438 - L1_Mur3 LINE L1 -315 5565 5022 1 1074 3851 186 145 9 chr6 64143599 64144393 -85372644 - RMER19B LTR ERVK 0 902 1 1 1074 1155 311 85 56 chr6 64144393 64144501 -85372536 - L1_Mur3 LINE L1 -859 5021 4939 1 1074 296 24 0 24 chr6 64144501 64144543 -85372494 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1 1074 1155 311 85 56 chr6 64144543 64144795 -85372242 - L1_Mur3 LINE L1 -942 4938 4668 1 1074 180 77 0 0 chr6 64144795 64144821 -85372216 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1074 1155 311 85 56 chr6 64144821 64144987 -85372050 - L1_Mur3 LINE L1 -1213 4667 4484 1 1074 315 0 0 0 chr6 64145032 64145067 -85371970 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1074 253 373 75 50 chr6 64146256 64146496 -85370541 - LTR86A2 LTR ERVL -144 364 119 1 1074 8106 23 1 0 chr6 64146600 64147939 -85369098 - L1Md_T LINE L1 0 6582 5243 1 1074 1606 105 0 41 chr6 64149187 64149456 -85367581 - L1Md_F2 LINE L1 -3 6579 6322 1 1074 7321 49 7 0 chr6 64149466 64150486 -85366551 - L1Md_F3 LINE L1 0 6584 5613 2 1074 486 120 0 0 chr6 64150761 64150836 -85366201 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1074 368 316 31 0 chr6 64151027 64151125 -85365912 - MTE2a LTR MaLR -222 157 57 2 1074 234 0 0 0 chr6 64151225 64151251 -85365786 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 2 1074 180 237 0 0 chr6 64151706 64151744 -85365293 + L2 LINE L2 2844 2881 -538 2 1074 188 175 16 0 chr6 64152017 64152080 -85364957 + (CAGAGA)n Simple_repeat Simple_repeat 3 66 0 2 1074 448 287 32 6 chr6 64152941 64153099 -85363938 - MER5A1 DNA MER1_type -4 162 1 2 1074 534 16 0 0 chr6 64153549 64153612 -85363425 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1074 188 265 0 128 chr6 64154262 64154340 -85362697 - L2 LINE L2 -2902 517 450 2 1074 388 215 32 0 chr6 64154709 64154802 -85362235 - RMER1C Other Other -2 1340 1245 2 1074 623 325 20 41 chr6 64155205 64155497 -85361540 - B4A SINE B4 -6 286 1 2 1074 247 288 17 0 chr6 64155497 64155556 -85361481 - MTEb LTR MaLR -219 160 101 2 1074 405 237 21 0 chr6 64155677 64155770 -85361267 - MTEb LTR MaLR -282 97 3 2 1074 859 205 81 10 chr6 64156529 64156726 -85360311 - B3 SINE B2 -4 212 2 2 1074 198 71 0 0 chr6 64157196 64157224 -85359813 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 1074 1155 325 64 56 chr6 64157825 64158559 -85358478 - MER63C DNA AcHobo -184 746 7 2 1074 26 0 0 0 chr6 64159130 64159156 -85357881 + AT_rich Low_complexity Low_complexity 1 26 0 2 1074 550 185 0 71 chr6 64159458 64159598 -85357439 + RMER6C LTR ERVK 418 547 -143 2 1074 299 279 35 0 chr6 64159664 64159750 -85357287 + MLT1C LTR MaLR 1 89 -378 2 1074 1020 150 0 31 chr6 64159766 64159959 -85357078 - RMER6C LTR ERVK -86 604 418 2 1074 417 16 48 0 chr6 64162019 64162081 -85354956 + (CAGAGA)n Simple_repeat Simple_repeat 4 68 0 2 1074 1561 137 47 25 chr6 64162105 64162383 -85354654 - RLTR20B3 LTR ERVK -274 303 20 2 1074 402 21 0 0 chr6 64162742 64162789 -85354248 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1074 340 293 23 68 chr6 64162802 64162934 -85354103 - B4A SINE B4 -6 286 161 2 1074 288 318 0 34 chr6 64163282 64163370 -85353667 + PB1D10 SINE Alu 33 117 0 2 1074 26 64 0 0 chr6 64163774 64163821 -85353216 + AT_rich Low_complexity Low_complexity 1 47 0 2 1074 225 250 76 48 chr6 64163982 64164087 -85352950 - L1MA6 LINE L1 -271 6029 5922 2 1074 489 268 22 16 chr6 64164218 64164400 -85352637 - L1MA6 LINE L1 -696 5595 5413 2 1074 486 277 22 0 chr6 64165107 64165244 -85351793 - B1F2 SINE Alu -9 140 1 2 1074 6205 59 1 0 chr6 64167538 64168350 -85348687 - L1_Mm LINE L1 -262 5621 4809 2 1074 4569 182 30 68 chr6 64168685 64169609 -85347428 - RMER19B LTR ERVK -12 890 2 2 1074 870 79 5 0 chr6 64170608 64170735 -85346302 + B1_Mus1 SINE Alu 19 148 0 2 1074 303 283 130 0 chr6 64171016 64171108 -85345929 - MIRb SINE MIR -90 178 75 2 1074 193 336 132 60 chr6 64172059 64172663 -85344374 + L3 LINE CR1 2203 2850 -1639 2 1074 741 61 0 0 chr6 64173050 64173149 -85343888 + (TA)n Simple_repeat Simple_repeat 1 99 0 2 1074 4108 97 12 22 chr6 64173396 64173986 -85343051 - Lx LINE L1 -11 6643 6060 2 1074 390 57 0 0 chr6 64174058 64174111 -85342926 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 2 1074 238 327 104 43 chr6 64174558 64174721 -85342316 - MLT1G1 LTR MaLR -178 401 229 2 1074 745 246 30 45 chr6 64174986 64175186 -85341851 + B3A SINE B2 2 198 0 2 1074 351 0 0 0 chr6 64176583 64176622 -85340415 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 1074 447 324 40 46 chr6 64176854 64177006 -85340031 - RSINE1 SINE B4 -13 152 2 2 1074 1036 289 75 36 chr6 64177440 64177802 -85339235 + MTEb LTR MaLR 1 376 -3 2 1074 23 33 0 0 chr6 64177852 64177882 -85339155 + AT_rich Low_complexity Low_complexity 1 30 0 2 1074 37 52 0 0 chr6 64177925 64177983 -85339054 + AT_rich Low_complexity Low_complexity 1 58 0 2 1074 622 233 75 7 chr6 64178568 64178717 -85338320 + RSINE1 SINE B4 1 159 -6 2 1074 291 308 31 4 chr6 64179635 64179745 -85337292 - PB1D10 SINE Alu 0 120 1 2 1074 654 219 22 0 chr6 64180257 64180321 -85336716 - B1_Mus1 SINE Alu -7 141 76 2 1074 1564 36 0 15 chr6 64180321 64180519 -85336518 + L1Md_F2 LINE L1 6376 6570 -12 2 1074 654 219 22 0 chr6 64180519 64180591 -85336446 - B1_Mus1 SINE Alu -73 75 3 2 1074 255 274 25 33 chr6 64181794 64181915 -85335122 - L1MCc LINE L1 -6274 149 30 2 1074 839 155 0 30 chr6 64182791 64182924 -85334113 - B1_Mur4 SINE Alu -13 137 9 2 1074 375 23 0 0 chr6 64183099 64183143 -85333894 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1074 3496 70 32 4 chr6 64184268 64184740 -85332297 - L1_Mus2 LINE L1 -2 6564 6080 2 1074 1699 63 21 0 chr6 64184742 64184979 -85332058 + L1_Mus2 LINE L1 5854 6095 -471 2 1074 21 36 0 0 chr6 64185052 64185080 -85331957 + AT_rich Low_complexity Low_complexity 1 28 0 2 1074 352 347 144 15 chr6 64185500 64185583 -85331454 + RMER1A Other Other 150 231 -799 2 1074 1197 39 0 32 chr6 64185583 64185769 -85331268 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1074 352 347 144 15 chr6 64185769 64185887 -85331150 + RMER1A Other Other 232 377 -653 2 1074 1692 139 7 17 chr6 64185933 64186232 -85330805 + RMER1B Other Other 757 1052 -14 2 1074 1587 219 47 54 chr6 64186601 64187025 -85330012 + MTC LTR MaLR 1 421 0 2 1074 1041 190 50 47 chr6 64187414 64187978 -85329059 + RMER10B LTR ERVL 1 437 -5 2 1074 52 58 0 0 chr6 64188229 64188316 -85328721 + AT_rich Low_complexity Low_complexity 1 87 0 2 1074 1271 89 10 40 chr6 64188318 64188516 -85328521 - B2_Mm2 SINE B2 -2 193 2 2 1074 814 199 0 0 chr6 64188526 64188667 -85328370 - B1_Mus1 SINE Alu -6 142 2 2 1074 417 224 158 20 chr6 64188760 64188906 -85328131 - MTE2b LTR MaLR -13 366 201 2 1074 284 175 0 16 chr6 64188914 64188978 -85328059 + GA-rich Low_complexity Low_complexity 1 63 0 2 1074 656 294 23 41 chr6 64188979 64189199 -85327838 - MTE2b LTR MaLR -163 216 1 2 1074 235 346 19 113 chr6 64189896 64190108 -85326929 - MLT1D LTR MaLR -224 281 90 2 1074 432 278 36 14 chr6 64190351 64190597 -85326440 + L1M2 LINE L1 5053 5308 -569 2 1074 225 0 0 0 chr6 64191050 64191075 -85325962 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1074 467 17 0 16 chr6 64191075 64191135 -85325902 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1074 1106 150 0 5 chr6 64191523 64191717 -85325320 - Lx LINE L1 0 6654 6462 2 1074 21 36 0 0 chr6 64191896 64191924 -85325113 + AT_rich Low_complexity Low_complexity 1 28 0 2 1074 477 0 0 0 chr6 64192583 64192636 -85324401 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1074 761 201 0 0 chr6 64192640 64192779 -85324258 - B1_Mus2 SINE Alu -8 139 1 2 1074 21 0 0 0 chr6 64192824 64192845 -85324192 + AT_rich Low_complexity Low_complexity 1 21 0 2 1074 9352 84 25 2 chr6 64192852 64194330 -85322707 - Lx3_Mus LINE L1 0 7009 5505 2 1074 3362 80 2 2 chr6 64194327 64194813 -85322224 - Lx3_Mus LINE L1 -1616 4270 3785 2 1074 744 281 127 60 chr6 64195475 64195934 -85321103 - RMER13A LTR ERVK -221 737 149 2 1074 254 354 22 76 chr6 64195940 64196163 -85320874 - RMER13A LTR ERVK -648 212 2 2 1074 192 182 0 0 chr6 64196642 64196686 -85320351 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1074 281 193 35 0 chr6 64196725 64196782 -85320255 - RSINE1 SINE B4 -106 59 1 2 1074 286 199 25 70 chr6 64197626 64197647 -85319390 + (CATA)n Simple_repeat Simple_repeat 2 21 0 2 1074 211 93 47 0 chr6 64197647 64197690 -85319347 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1074 286 199 25 70 chr6 64197690 64197825 -85319212 + (CATA)n Simple_repeat Simple_repeat 2 131 0 2 1074 494 359 40 26 chr6 64198021 64198247 -85318790 + LTR40a LTR ERVL 43 271 -248 2 1074 242 314 157 0 chr6 64198303 64198443 -85318594 + LTR40a LTR ERVL 288 449 -13 2 1074 247 276 84 19 chr6 64198923 64199030 -85318007 - PB1 SINE Alu -11 116 3 2 1074 431 303 110 79 chr6 64199523 64199777 -85317260 - MLT1B LTR MaLR -123 267 6 2 1074 229 209 43 29 chr6 64200324 64200393 -85316644 + L1MC5 LINE L1 7701 7770 -191 2 1074 359 366 50 58 chr6 64200580 64200841 -85316196 - MamSINE1 SINE tRNA -30 260 2 2 1074 265 211 107 18 chr6 64201136 64201237 -85315800 - MTE2b LTR MaLR 0 379 257 2 1074 405 0 0 0 chr6 64201493 64201538 -85315499 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1074 260 235 75 32 chr6 64201983 64202161 -85314876 - L1M4c LINE L1 -4323 2061 1782 2 1074 31848 75 9 7 chr6 64203273 64206973 -85310064 - L1Md_F2 LINE L1 -1 6581 2889 2 1074 573 15 0 0 chr6 64206973 64207039 -85309998 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 2 1074 31848 94 16 8 chr6 64207039 64209257 -85307780 - L1Md_F2 LINE L1 -2995 2888 631 2 1074 437 279 69 36 chr6 64209256 64209406 -85307631 - L1M4c LINE L1 -5159 1225 1072 2 1074 1700 178 132 31 chr6 64209406 64209516 -85307521 - RMER4A LTR ERVK 0 466 354 2 1074 192 97 0 0 chr6 64209516 64209547 -85307490 + (CAGAGA)n Simple_repeat Simple_repeat 4 34 0 2 1074 1700 178 132 31 chr6 64209547 64209687 -85307350 - RMER4A LTR ERVK -113 353 175 2 1074 1252 62 17 6 chr6 64209687 64209865 -85307172 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 2 1074 1700 178 132 31 chr6 64209865 64210036 -85307001 - RMER4A LTR ERVK -292 174 2 2 1074 437 279 69 36 chr6 64210036 64210160 -85306877 - L1M4c LINE L1 -5313 1071 942 2 1074 23 33 0 0 chr6 64210255 64210285 -85306752 + AT_rich Low_complexity Low_complexity 1 30 0 2 1074 2637 79 5 3 chr6 64210415 64210796 -85306241 - Lx3_Mus LINE L1 -356 5530 5149 2 1074 8931 92 14 20 chr6 64210796 64211824 -85305213 + Lx3_Mus LINE L1 5537 6529 -480 2 1074 3515 15 2 0 chr6 64211824 64212219 -85304818 + MTA_Mm LTR MaLR 1 396 0 2 1074 8931 103 19 30 chr6 64212219 64212681 -85304356 + Lx3_Mus LINE L1 6530 7009 0 2 1074 863 140 34 39 chr6 64213209 64213387 -85303650 - L1Md_F2 LINE L1 0 6582 6406 2 1074 1182 88 0 0 chr6 64213387 64213547 -85303490 + L1_Mus1 LINE L1 6215 6374 -193 2 1074 2728 279 90 11 chr6 64214035 64214942 -85302095 - Lx7 LINE L1 -407 7289 6311 2 1074 491 275 42 37 chr6 64215087 64215276 -85301761 - L1M4c LINE L1 -5697 687 498 2 1074 203 189 0 0 chr6 64216108 64216145 -85300892 + T-rich Low_complexity Low_complexity 1 37 0 2 1074 596 138 131 91 chr6 64216362 64216538 -85300499 + B2_Mm2 SINE B2 1 183 -12 2 1074 22 0 0 0 chr6 64216538 64216560 -85300477 + AT_rich Low_complexity Low_complexity 1 22 0 2 1074 491 353 13 0 chr6 64216611 64216761 -85300276 + RSINE1 SINE B4 14 165 0 3 1074 828 118 51 7 chr6 64216816 64216953 -85300084 + URR1B DNA MER1_type 83 225 0 3 1074 214 337 16 0 chr6 64217468 64217549 -85299488 + MIRb SINE MIR 26 114 -154 3 1074 954 26 0 0 chr6 64217552 64217665 -85299372 + (TTC)n Simple_repeat Simple_repeat 2 114 0 3 1074 5221 47 5 3 chr6 64217706 64218344 -85298693 - L1_Mus1 LINE L1 0 6567 5929 3 1074 288 314 41 41 chr6 64218344 64218490 -85298547 + MIRb SINE MIR 107 252 -16 3 1074 339 44 0 0 chr6 64220264 64220309 -85296728 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1074 388 336 165 8 chr6 64220319 64220568 -85296469 - B4A SINE B4 -4 288 1 3 1074 382 301 0 11 chr6 64220726 64220820 -85296217 + B3A SINE B2 60 152 -46 3 1074 219 45 21 64 chr6 64220878 64220925 -85296112 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 3 1074 3359 201 25 6 chr6 64221515 64222165 -85294872 - Lx5 LINE L1 -1 7049 6388 3 1074 276 237 82 10 chr6 64222213 64222311 -85294726 + MIR SINE MIR 109 213 -49 3 1074 2314 232 101 5 chr6 64223132 64223747 -85293290 - Lx2B LINE L1 0 7000 6327 3 1075 26 0 0 0 chr6 64225350 64225376 -85291661 + AT_rich Low_complexity Low_complexity 1 26 0 3 1075 180 33 67 0 chr6 64225607 64225637 -85291400 - L2 LINE L2 -1091 2328 2297 3 1075 583 341 16 63 chr6 64226440 64226631 -85290406 + B3A SINE B2 3 184 -14 3 1075 752 154 80 14 chr6 64228864 64229002 -85288035 + B1_Mur4 SINE Alu 4 150 0 3 1075 739 169 223 0 chr6 64229954 64230138 -85286899 - URR1B DNA MER1_type 0 225 1 3 1075 23 0 0 0 chr6 64230500 64230523 -85286514 + AT_rich Low_complexity Low_complexity 1 23 0 3 1075 387 202 0 0 chr6 64231459 64231553 -85285484 + (TG)n Simple_repeat Simple_repeat 1 94 0 3 1075 232 105 50 50 chr6 64231831 64231873 -85285164 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 3 1075 1699 21 0 0 chr6 64231873 64232066 -85284971 - B2_Mm1t SINE B2 0 193 1 3 1075 232 105 50 50 chr6 64232066 64232083 -85284954 + (TTTG)n Simple_repeat Simple_repeat 3 18 0 3 1075 517 250 19 0 chr6 64234175 64234279 -85282758 + B3A SINE B2 1 106 -92 3 1075 243 0 0 0 chr6 64234288 64234315 -85282722 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1075 1909 133 70 0 chr6 64234702 64235003 -85282034 - ORR1A2 LTR MaLR -5 322 1 3 1075 245 309 85 0 chr6 64235010 64235104 -85281933 - RMER4B LTR ERVK -139 446 345 3 1075 5806 284 61 24 chr6 64236691 64238502 -85278535 - RodERV21-int LTR ERV1 -2655 2336 458 3 1075 1213 229 72 0 chr6 64238495 64238774 -85278263 - RodERV21-int LTR ERV1 -4676 315 17 3 1075 990 241 117 16 chr6 64239684 64240059 -85276978 + MT2A LTR ERVL 6 464 -69 3 1075 652 194 222 0 chr6 64240087 64240267 -85276770 - URR1B DNA MER1_type -5 220 1 3 1075 1179 290 38 40 chr6 64240303 64240881 -85276156 + L1MB8 LINE L1 5480 6056 -122 3 1075 753 340 57 0 chr6 64241108 64241317 -85275720 - ID_B1 SINE B4 -2 222 2 3 1075 275 47 70 0 chr6 64242804 64242847 -85274190 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 3 1075 486 278 125 91 chr6 64243175 64243695 -85273342 - LTR48 LTR ERV1 -2 785 127 3 1075 186 71 0 0 chr6 64243695 64243723 -85273314 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 3 1075 363 289 154 120 chr6 64243723 64243880 -85273157 - LTR48 LTR ERV1 -661 126 1 3 1075 275 0 0 28 chr6 64244224 64244260 -85272777 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 1075 239 328 121 78 chr6 64244393 64244527 -85272510 - RMER5 LTR ERV1 -2 532 394 3 1075 692 174 20 40 chr6 64244527 64244677 -85272360 + B1_Mur1 SINE Alu 2 148 -1 3 1075 239 328 121 78 chr6 64244677 64245015 -85272022 - RMER5 LTR ERV1 -141 393 41 3 1075 1073 270 87 4 chr6 64245158 64245422 -85271615 - MTD LTR MaLR 0 419 134 3 1075 2180 202 112 55 chr6 64245423 64245755 -85271282 - RLTR40 LTR ERVK 0 817 500 3 1075 2080 186 17 15 chr6 64245755 64246159 -85270878 - MTB_Mm LTR MaLR 0 407 3 3 1075 2180 202 112 55 chr6 64246159 64246449 -85270588 - RLTR40 LTR ERVK -318 499 159 3 1075 391 180 0 76 chr6 64246450 64246582 -85270455 - Lx2B LINE L1 -7 6993 6872 3 1075 743 161 70 45 chr6 64246582 64246738 -85270299 - RLTR40 LTR ERVK -655 162 3 3 1075 627 217 8 0 chr6 64246738 64246863 -85270174 - MTD LTR MaLR -279 140 15 3 1075 21 0 0 0 chr6 64248198 64248219 -85268818 + AT_rich Low_complexity Low_complexity 1 21 0 3 1075 772 181 5 38 chr6 64248219 64248403 -85268634 - Lx4A LINE L1 -3 7055 6878 3 1075 25837 136 34 33 chr6 64248407 64253532 -85263505 - L1Md_F LINE L1 -521 5362 281 3 1075 650 361 122 4 chr6 64253969 64254222 -85262815 + B4A SINE B4 2 284 -8 3 1075 423 0 0 0 chr6 64254938 64254985 -85262052 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1075 267 322 23 11 chr6 64255178 64255266 -85261771 - B1F SINE Alu -46 103 15 3 1075 359 17 67 0 chr6 64255919 64255979 -85261058 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 3 1075 1589 269 26 18 chr6 64256458 64256848 -85260189 + MTD LTR MaLR 13 405 -14 3 1075 21 71 0 0 chr6 64257083 64257125 -85259912 + AT_rich Low_complexity Low_complexity 1 42 0 3 1075 213 39 0 0 chr6 64257837 64257863 -85259174 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1075 876 249 11 26 chr6 64257963 64258126 -85258911 + B3 SINE B2 3 167 -49 3 1075 369 75 0 0 chr6 64258126 64258179 -85258858 + (CATA)n Simple_repeat Simple_repeat 4 56 0 3 1075 876 249 11 26 chr6 64258179 64258205 -85258832 + B3 SINE B2 168 189 -27 3 1075 1050 295 74 14 chr6 64259637 64259988 -85257049 + MTE2b LTR MaLR 6 377 -2 3 1075 324 321 61 56 chr6 64260478 64260676 -85256361 - L1M5 LINE L1 -564 5676 5478 3 1075 231 89 17 35 chr6 64261060 64261118 -85255919 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 3 1075 186 143 0 0 chr6 64262219 64262254 -85254783 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1075 3774 238 69 84 chr6 64262258 64262825 -85254212 + Lx6 LINE L1 6311 6882 -578 3 1075 378 0 0 0 chr6 64262825 64262867 -85254170 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1075 3774 238 69 84 chr6 64262867 64263074 -85253963 + Lx6 LINE L1 6883 7034 -426 3 1075 999 151 131 0 chr6 64263074 64263273 -85253764 + URR1A DNA MER1_type 1 225 -1 3 1075 3774 238 69 84 chr6 64263273 64263650 -85253387 + Lx6 LINE L1 7035 7446 -14 3 1075 25 0 0 0 chr6 64263900 64263925 -85253112 + AT_rich Low_complexity Low_complexity 1 25 0 3 1075 302 311 102 37 chr6 64263926 64264113 -85252924 - Lx8 LINE L1 -64 7409 7211 3 1075 23 68 0 0 chr6 64264247 64264291 -85252746 + AT_rich Low_complexity Low_complexity 1 44 0 3 1075 5121 265 69 36 chr6 64264292 64266621 -85250416 - L1_Mur3 LINE L1 -2216 3664 1259 3 1075 23 54 0 0 chr6 64267636 64267673 -85249364 + AT_rich Low_complexity Low_complexity 1 37 0 3 1075 28 48 0 0 chr6 64267795 64267837 -85249200 + AT_rich Low_complexity Low_complexity 1 42 0 3 1075 411 384 8 0 chr6 64267876 64268001 -85249036 - RSINE1 SINE B4 -39 126 1 3 1075 343 299 250 13 chr6 64268231 64268539 -85248498 - MLT1J LTR MaLR -44 468 88 3 1075 457 297 19 25 chr6 64269227 64269389 -85247648 + ID_B1 SINE B4 18 178 -46 3 1075 1939 148 75 3 chr6 64270695 64271067 -85245970 + Lx2 LINE L1 6599 6997 0 3 1075 214 282 42 0 chr6 64271517 64271588 -85245449 - L2 LINE L2 -767 2652 2579 3 1075 459 0 0 0 chr6 64271845 64271896 -85245141 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1075 279 0 0 0 chr6 64271896 64271926 -85245111 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1075 606 354 14 0 chr6 64272110 64272257 -85244780 - RSINE1 SINE B4 -13 152 4 3 1075 527 296 23 21 chr6 64272270 64272486 -85244551 - L1MA5A LINE L1 -400 5897 5683 3 1075 256 364 65 19 chr6 64273347 64273501 -85243536 - MIR SINE MIR -77 185 25 3 1075 447 263 26 0 chr6 64273516 64273630 -85243407 - L2 LINE L2 -993 2426 2310 3 1075 523 292 156 28 chr6 64273758 64274110 -85242927 - MLT1K LTR MaLR -3 592 196 3 1075 820 101 34 7 chr6 64274954 64275103 -85241934 + L1_Mus3 LINE L1 6481 6633 -5 3 1075 200 214 0 87 chr6 64275115 64275161 -85241876 - MIR SINE MIR -205 57 16 3 1075 735 276 6 6 chr6 64275232 64275396 -85241641 + B3 SINE B2 48 211 -5 3 1075 561 119 61 25 chr6 64275669 64275832 -85241205 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 3 1075 203 356 45 58 chr6 64276082 64276237 -85240800 - L2b LINE L2 -127 3248 3096 3 1075 3840 62 15 19 chr6 64279257 64279781 -85237256 + L1_Mus1 LINE L1 5943 6464 -103 3 1075 315 254 47 53 chr6 64280084 64280150 -85236887 + L1MEg LINE L1 1804 1870 -4214 3 1075 814 65 187 0 chr6 64280150 64280273 -85236764 + B1_Mus2 SINE Alu 2 147 0 3 1075 315 254 47 53 chr6 64280273 64280289 -85236748 + L1MEg LINE L1 1871 1889 -4195 3 1075 1106 122 0 6 chr6 64280289 64280470 -85236567 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1075 315 254 47 53 chr6 64280470 64280536 -85236501 + L1MEg LINE L1 1890 1952 -4132 3 1075 22 0 0 0 chr6 64280946 64280968 -85236069 + AT_rich Low_complexity Low_complexity 1 22 0 3 1075 21 82 0 0 chr6 64281426 64281475 -85235562 + AT_rich Low_complexity Low_complexity 1 49 0 3 1075 3103 30 0 232 chr6 64281732 64282300 -85234737 - RLTR10C LTR ERVK 0 436 1 3 1075 8111 32 0 1 chr6 64282300 64283237 -85233800 - MMERVK10C-int LTR ERVK 0 7581 6646 3 1075 41766 40 0 1 chr6 64283223 64288167 -85228870 - MMERVK10C-int LTR ERVK -1771 5810 870 3 1075 2647 87 53 3 chr6 64288165 64288545 -85228492 - MMERVK10C-int LTR ERVK -7182 399 1 3 1075 3766 30 5 0 chr6 64288545 64288979 -85228058 - RLTR10C LTR ERVK 0 436 1 3 1075 351 0 0 0 chr6 64289005 64289044 -85227993 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1075 269 281 193 16 chr6 64289370 64289561 -85227476 + MIR SINE MIR 32 258 -10 3 1075 24 53 0 0 chr6 64289690 64289728 -85227309 + AT_rich Low_complexity Low_complexity 1 38 0 3 1075 214 278 19 0 chr6 64290226 64290280 -85226757 + CT-rich Low_complexity Low_complexity 3 57 0 3 1075 2493 29 12 22 chr6 64291077 64291400 -85225637 + L1Md_F3 LINE L1 6264 6583 -1 3 1075 693 319 43 79 chr6 64291649 64291952 -85225085 - B4 SINE B4 0 292 1 3 1075 186 270 0 0 chr6 64292839 64292902 -85224135 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1075 420 82 0 0 chr6 64293529 64293590 -85223447 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1075 550 218 40 114 chr6 64293873 64294049 -85222988 + RSINE1 SINE B4 3 165 0 3 1075 200 338 0 12 chr6 64294049 64294130 -85222907 + (CATA)n Simple_repeat Simple_repeat 1 80 0 3 1075 212 371 65 0 chr6 64294257 64294381 -85222656 + MIRb SINE MIR 68 199 -69 3 1075 265 250 0 0 chr6 64298273 64298337 -85218700 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1075 24 77 0 0 chr6 64298788 64298840 -85218197 + AT_rich Low_complexity Low_complexity 1 52 0 4 1075 225 183 197 0 chr6 64300540 64300611 -85216426 - Lx8 LINE L1 -1 7472 7388 4 1075 234 0 0 0 chr6 64300639 64300665 -85216372 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1075 432 0 0 0 chr6 64300665 64300712 -85216325 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1075 795 340 94 8 chr6 64300744 64301117 -85215920 - Lx7 LINE L1 -402 7294 6890 4 1075 888 241 80 0 chr6 64302977 64303176 -85213861 - B3 SINE B2 0 216 2 4 1075 689 106 0 9 chr6 64303212 64303326 -85213711 + (CA)n Simple_repeat Simple_repeat 2 114 0 4 1075 220 320 50 20 chr6 64303397 64303410 -85213627 - B4A SINE B4 -187 105 4 4 1075 522 165 0 12 chr6 64303410 64303496 -85213541 - BC1_Mm scRNA scRNA -64 88 4 4 1075 23 0 0 0 chr6 64305244 64305267 -85211770 + AT_rich Low_complexity Low_complexity 1 23 0 4 1075 496 307 47 10 chr6 64305582 64305790 -85211247 - L1M2 LINE L1 -719 5581 5363 4 1075 330 336 8 0 chr6 64305929 64306057 -85210980 - L1M2 LINE L1 -1291 4852 4724 4 1075 294 221 0 2 chr6 64306478 64306540 -85210497 - B3A SINE B2 -131 64 4 4 1075 282 402 68 61 chr6 64307098 64307376 -85209661 + B4 SINE B4 2 281 -11 4 1075 213 132 0 0 chr6 64307428 64307466 -85209571 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1075 24 32 0 0 chr6 64307471 64307502 -85209535 + AT_rich Low_complexity Low_complexity 1 31 0 4 1075 495 33 0 0 chr6 64308588 64308649 -85208388 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1075 22 35 0 0 chr6 64308993 64309022 -85208015 + AT_rich Low_complexity Low_complexity 1 29 0 4 1075 222 159 23 0 chr6 64310517 64310561 -85206476 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 4 1075 4638 153 33 20 chr6 64310561 64311355 -85205682 - Lx4A LINE L1 0 7058 6255 4 1075 1447 154 38 10 chr6 64311355 64311644 -85205393 + Lx4A LINE L1 5978 6274 -784 4 1075 207 0 0 0 chr6 64311825 64311848 -85205189 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1075 674 246 41 69 chr6 64311897 64312115 -85204922 - B4A SINE B4 -56 236 25 4 1075 1548 101 0 4 chr6 64313164 64313393 -85203644 + L1Md_F2 LINE L1 6354 6581 -1 4 1075 728 216 179 0 chr6 64313560 64313750 -85203287 + URR1B DNA MER1_type 1 224 -1 4 1075 7323 54 1 2 chr6 64314900 64315806 -85201231 - L1_Mus1 LINE L1 0 6567 5663 4 1075 353 148 65 16 chr6 64315872 64315934 -85201103 + PB1D10 SINE Alu 22 86 -31 4 1075 342 0 0 0 chr6 64315943 64315981 -85201056 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1075 1323 83 0 15 chr6 64316277 64316472 -85200565 + L1Md_F2 LINE L1 6380 6571 -11 4 1075 1742 210 19 8 chr6 64319449 64319823 -85197214 - ORR1C1 LTR MaLR 0 378 1 4 1075 5106 45 0 0 chr6 64320419 64321035 -85196002 - L1Md_F2 LINE L1 -14 6568 5953 4 1075 272 31 0 0 chr6 64321063 64321095 -85195942 + L1_Mus2 LINE L1 5896 5927 -639 4 1075 1604 205 84 11 chr6 64321388 64321758 -85195279 - RMER1B Other Other -14 1052 656 4 1075 214 341 125 58 chr6 64324503 64324846 -85192191 - L2 LINE L2 -1974 1445 1080 4 1075 287 185 0 58 chr6 64325420 64325506 -85191531 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 4 1075 2237 80 58 3 chr6 64325938 64326250 -85190787 + L1_Mus1 LINE L1 6237 6565 -2 4 1075 5163 58 1 1 chr6 64326784 64327435 -85189602 - L1Md_F2 LINE L1 -12 6570 5920 4 1075 240 297 29 29 chr6 64327598 64327702 -85189335 - L1M5 LINE L1 -467 5773 5670 4 1075 37301 59 4 9 chr6 64328035 64334258 -85182779 - L1Md_T LINE L1 -2 6580 375 4 1075 361 335 150 4 chr6 64334328 64334568 -85182469 - L1M5 LINE L1 -1036 5110 4836 4 1075 1059 71 0 0 chr6 64334894 64335034 -85182003 + L1_Mus1 LINE L1 6428 6567 0 4 1075 320 295 123 24 chr6 64335702 64336042 -85180995 - L1M5 LINE L1 -2452 3694 3321 4 1075 201 143 48 0 chr6 64336174 64336216 -85180821 + T-rich Low_complexity Low_complexity 3 46 0 4 1075 2937 293 65 9 chr6 64336955 64337819 -85179218 - Lx8 LINE L1 -351 7122 6211 4 1075 1882 232 24 30 chr6 64337897 64338391 -85178646 + RLTR22_Mur LTR ERVK 2 492 -1356 4 1075 912 242 62 43 chr6 64338406 64338730 -85178307 + RLTR22_Mur LTR ERVK 1392 1721 -127 4 1075 388 292 64 58 chr6 64338971 64339142 -85177895 + RMER12 LTR ERVK 1145 1316 -6 4 1075 1929 309 65 37 chr6 64339407 64340409 -85176628 + MTE-int LTR MaLR 282 1387 -193 4 1075 1151 259 78 28 chr6 64340419 64340776 -85176261 + MTE2b LTR MaLR 3 377 -2 4 1075 21 36 0 0 chr6 64341345 64341373 -85175664 + AT_rich Low_complexity Low_complexity 1 28 0 4 1075 301 322 118 77 chr6 64341599 64341794 -85175243 - MLT1B LTR MaLR -187 203 1 4 1075 444 130 0 0 chr6 64341903 64341972 -85175065 + Lx9 LINE L1 7404 7472 -172 4 1075 288 0 0 0 chr6 64341972 64342004 -85175033 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1075 255 214 56 37 chr6 64342007 64342114 -85174923 + Lx9 LINE L1 7536 7644 0 4 1075 6297 36 0 0 chr6 64342256 64343004 -85174033 - L1Md_T LINE L1 0 6582 5835 4 1075 244 350 126 90 chr6 64343494 64344025 -85173012 - L2 LINE L2 -458 2961 2412 4 1075 400 307 115 43 chr6 64344109 64344317 -85172720 - RMER15 LTR ERVL -17 558 336 4 1075 644 221 0 0 chr6 64344355 64344486 -85172551 - MTC LTR MaLR -285 136 6 4 1075 22 0 0 0 chr6 64345482 64345504 -85171533 + AT_rich Low_complexity Low_complexity 1 22 0 4 1075 320 287 121 9 chr6 64345603 64345719 -85171318 + B3 SINE B2 87 215 -1 4 1075 210 291 0 0 chr6 64345863 64345918 -85171119 + GA-rich Low_complexity Low_complexity 5 59 0 4 1075 299 314 57 21 chr6 64346778 64346918 -85170119 - MIR SINE MIR 0 262 118 4 1075 310 272 172 26 chr6 64347427 64347578 -85169459 - L1MB1 LINE L1 -311 6001 5829 4 1075 261 0 0 0 chr6 64347698 64347727 -85169310 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1075 380 184 254 0 chr6 64347769 64347928 -85169109 - Lx9 LINE L1 -241 7403 7205 4 1075 23 54 0 0 chr6 64348057 64348094 -85168943 + AT_rich Low_complexity Low_complexity 1 37 0 4 1075 464 272 92 13 chr6 64348100 64348253 -85168784 - MIRb SINE MIR -14 254 90 4 1075 209 59 37 56 chr6 64349011 64349065 -85167972 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1075 660 282 50 25 chr6 64349363 64349563 -85167474 + B3 SINE B2 2 206 -10 4 1075 351 274 63 71 chr6 64350165 64350291 -85166746 - L1MD2 LINE L1 -240 6119 5995 4 1075 519 170 0 0 chr6 64351457 64351557 -85165480 + CT-rich Low_complexity Low_complexity 1 100 0 4 1075 21 0 0 0 chr6 64353015 64353036 -85164001 + AT_rich Low_complexity Low_complexity 1 21 0 4 1075 251 348 32 12 chr6 64353133 64353443 -85163594 + L1M2 LINE L1 1959 2316 -4266 4 1075 337 263 16 17 chr6 64353518 64353657 -85163380 + L1M2 LINE L1 2470 2625 -3924 4 1075 662 317 92 38 chr6 64353804 64354814 -85162223 + L1M2 LINE L1 5007 6071 -774 4 1075 4154 39 0 4 chr6 64354812 64355308 -85161729 + L1Md_F2 LINE L1 5988 6481 -101 4 1075 354 274 105 52 chr6 64355300 64355535 -85161502 + L1M2 LINE L1 6068 6311 -633 4 1075 616 195 78 0 chr6 64355545 64355673 -85161364 + B1_Mur3 SINE Alu 9 146 -3 4 1075 857 58 39 34 chr6 64355673 64355851 -85161186 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 4 1075 194 91 30 0 chr6 64355855 64355888 -85161149 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 4 1076 352 399 31 21 chr6 64357114 64357403 -85159634 + L3 LINE CR1 3440 3731 -758 4 1076 222 37 0 0 chr6 64357419 64357446 -85159591 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1076 2345 218 79 16 chr6 64358184 64358752 -85158285 - Lx2B LINE L1 -5 6995 6392 4 1076 22532 88 70 27 chr6 64358752 64363042 -85153995 - L1Md_F LINE L1 -1058 4825 348 4 1076 598 164 0 0 chr6 64363639 64363743 -85153294 + U6 snRNA snRNA 3 106 -1 4 1076 590 250 0 0 chr6 64363743 64363875 -85153162 + Lx6 LINE L1 7309 7440 -20 4 1076 266 317 19 56 chr6 64363916 64364023 -85153014 + B1F1 SINE Alu 10 112 -37 4 1076 340 258 0 92 chr6 64363930 64364028 -85153009 + ID_B1 SINE B4 103 191 -33 4 1076 4734 212 67 120 chr6 64364202 64364773 -85152264 - L1_Mur3 LINE L1 -1109 4771 4287 4 1076 369 0 0 0 chr6 64364773 64364814 -85152223 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1076 4734 212 67 120 chr6 64364814 64366053 -85150984 - L1_Mur3 LINE L1 -1594 4286 3059 4 1076 1140 101 0 0 chr6 64366054 64366232 -85150805 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 4 1076 327 177 82 20 chr6 64366239 64366337 -85150700 - L1_Mur3 LINE L1 -2916 2964 2861 4 1076 838 218 55 22 chr6 64366325 64366780 -85150257 - L1_Mur3 LINE L1 -4524 1356 845 4 1076 662 288 27 39 chr6 64367082 64367342 -85149695 - L1_Mur3 LINE L1 -6883 845 589 4 1076 873 29 0 0 chr6 64369000 64369104 -85147933 + (CATATA)n Simple_repeat Simple_repeat 2 105 0 4 1076 183 355 19 93 chr6 64369195 64369400 -85147637 - MIRb SINE MIR -56 212 23 4 1076 25 0 0 0 chr6 64370114 64370139 -85146898 + AT_rich Low_complexity Low_complexity 1 25 0 4 1076 934 294 48 57 chr6 64370481 64370816 -85146221 - Lx5 LINE L1 -32 7018 6687 4 1076 249 33 0 0 chr6 64370825 64370855 -85146182 + (TTTCC)n Simple_repeat Simple_repeat 1 30 0 4 1076 1386 56 0 0 chr6 64370855 64371035 -85146002 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 4 1076 767 34 67 0 chr6 64371035 64371154 -85145883 + (TCCCC)n Simple_repeat Simple_repeat 5 131 0 4 1076 477 0 0 0 chr6 64371154 64371207 -85145830 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1076 2209 312 93 23 chr6 64373462 64374371 -85142666 - Lx8 LINE L1 -71 7402 6430 4 1076 616 301 29 8 chr6 64374376 64374617 -85142420 - L1M2 LINE L1 -1808 4335 4090 4 1076 798 182 15 0 chr6 64374619 64374756 -85142281 + B1_Mus1 SINE Alu 5 143 -5 4 1076 552 183 0 45 chr6 64374770 64374879 -85142158 + polypurine Low_complexity Low_complexity 2 107 0 4 1076 986 140 6 0 chr6 64374879 64375058 -85141979 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1076 552 183 0 45 chr6 64375058 64375125 -85141912 + polypurine Low_complexity Low_complexity 108 170 0 4 1076 2764 270 57 37 chr6 64375131 64375469 -85141568 - L1_Mur3 LINE L1 -1810 4070 3730 4 1076 771 83 0 0 chr6 64375469 64375577 -85141460 + (TG)n Simple_repeat Simple_repeat 1 108 0 4 1076 2764 270 57 37 chr6 64375577 64376478 -85140559 - L1_Mur3 LINE L1 -2151 3729 2808 4 1076 2390 141 51 42 chr6 64376514 64376813 -85140224 - RMER6B LTR ERVK -6 455 156 5 1076 414 0 0 0 chr6 64376813 64376859 -85140178 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1076 2390 141 51 42 chr6 64376859 64377010 -85140027 - RMER6B LTR ERVK -306 155 2 5 1076 1195 305 63 17 chr6 64377011 64377538 -85139499 - L1_Mur3 LINE L1 -3088 2792 2242 4 1076 216 0 0 0 chr6 64378586 64378610 -85138427 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 5 1076 224 341 0 11 chr6 64378766 64378855 -85138182 + CT-rich Low_complexity Low_complexity 4 91 0 5 1076 204 135 0 0 chr6 64378880 64378917 -85138120 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1076 320 143 0 67 chr6 64378927 64378987 -85138050 + HAL1-3A_ME LINE L1 1976 2031 -827 5 1076 293 306 138 39 chr6 64378999 64379230 -85137807 + MIRb SINE MIR 9 262 -6 5 1076 21 57 0 0 chr6 64381330 64381365 -85135672 + AT_rich Low_complexity Low_complexity 1 35 0 5 1076 1156 57 0 0 chr6 64381878 64382018 -85135019 + B1_Mus2 SINE Alu 2 141 -6 5 1076 252 0 0 0 chr6 64382020 64382048 -85134989 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 5 1076 501 256 0 0 chr6 64382068 64382185 -85134852 + PB1D10 SINE Alu 1 117 0 5 1076 1511 64 0 0 chr6 64382384 64382572 -85134465 - L1_Mus2 LINE L1 -144 6422 6235 5 1076 1015 51 7 0 chr6 64382572 64382710 -85134327 + L1_Mus2 LINE L1 6428 6566 0 5 1076 33 66 0 0 chr6 64383825 64383886 -85133151 + AT_rich Low_complexity Low_complexity 1 61 0 5 1076 555 252 24 8 chr6 64384725 64384849 -85132188 - RSINE1 SINE B4 -38 127 2 5 1076 1231 291 78 38 chr6 64385327 64385752 -85131285 - Lx5 LINE L1 -9 7041 6600 5 1076 9538 183 49 19 chr6 64385769 64387899 -85129138 - L1_Mur3 LINE L1 -1363 4514 2322 5 1076 3080 68 2 2 chr6 64387899 64388295 -85128742 - MTA_Mm LTR MaLR 0 396 1 5 1076 8046 60 31 5 chr6 64388296 64389365 -85127672 - MTA_Mm-int LTR MaLR -1 1097 1 5 1076 3104 56 8 2 chr6 64389365 64389759 -85127278 - MTA_Mm LTR MaLR 0 396 1 5 1076 6997 183 51 16 chr6 64389759 64389958 -85127079 - L1_Mur3 LINE L1 -3552 2325 2128 5 1076 4115 42 0 0 chr6 64389958 64390440 -85126597 - LTRIS_Mm LTR ERV1 0 482 1 5 1076 6997 183 51 16 chr6 64390440 64390517 -85126520 - L1_Mur3 LINE L1 -3750 2127 2053 5 1076 387 41 0 0 chr6 64390517 64390566 -85126471 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1076 6997 210 50 13 chr6 64390566 64391679 -85125358 - L1_Mur3 LINE L1 -3825 2052 892 5 1076 3553 13 2 0 chr6 64391848 64392243 -85124794 + MTA_Mm LTR MaLR 1 396 0 5 1076 297 208 83 0 chr6 64392544 64392616 -85124421 - ID4_ SINE ID -4 79 2 5 1076 226 320 94 28 chr6 64392637 64392743 -85124294 - PB1D10 SINE Alu -4 113 1 5 1076 462 148 139 0 chr6 64393292 64393407 -85123630 - L1_Mus3 LINE L1 -4 6634 6504 5 1076 520 290 56 30 chr6 64393648 64393879 -85123158 - L1M3 LINE L1 -396 5787 5551 5 1076 272 236 37 43 chr6 64393960 64394061 -85122976 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 5 1076 308 83 0 20 chr6 64394061 64394110 -85122927 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1076 272 236 37 43 chr6 64394110 64394172 -85122865 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 5 1076 27 49 0 0 chr6 64394210 64394251 -85122786 + AT_rich Low_complexity Low_complexity 1 41 0 5 1076 603 268 117 68 chr6 64394502 64394750 -85122287 + MTEa LTR MaLR 4 263 -116 5 1076 478 151 19 0 chr6 64394845 64394951 -85122086 + (TCTA)n Simple_repeat Simple_repeat 2 109 0 5 1076 8943 34 15 2 chr6 64395494 64397299 -85119738 - L1Md_F2 LINE L1 0 6582 4765 5 1076 185 310 156 58 chr6 64397332 64397486 -85119551 + MER5A DNA MER1_type 14 182 -7 5 1076 4651 179 48 13 chr6 64397543 64398419 -85118618 + RMER13B LTR ERVK 2 908 0 5 1076 309 309 0 10 chr6 64400084 64400182 -85116855 + (CA)n Simple_repeat Simple_repeat 2 98 0 5 1076 540 45 0 0 chr6 64400358 64400425 -85116612 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1076 2832 95 14 12 chr6 64401209 64401633 -85115404 + L1_Mus3 LINE L1 6208 6632 -6 5 1076 2147 175 163 8 chr6 64401663 64402146 -85114891 + RMER4B LTR ERVK 17 574 -11 5 1076 4297 86 5 2 chr6 64402774 64403356 -85113681 - L1Md_F2 LINE L1 -13 6569 5986 5 1076 270 348 73 52 chr6 64403383 64403616 -85113421 + L2a LINE L2 3151 3388 -38 5 1076 420 383 22 0 chr6 64403893 64404120 -85112917 - L1ME2 LINE L1 -297 5867 5636 5 1076 346 314 26 49 chr6 64404175 64404480 -85112557 - L1MB8 LINE L1 -102 6076 5779 5 1076 290 312 12 12 chr6 64404552 64404633 -85112404 - L3 LINE CR1 -2252 2237 2157 5 1076 318 325 93 58 chr6 64405042 64405267 -85111770 + L1MD3 LINE L1 6736 6968 -1027 5 1076 506 305 21 21 chr6 64405469 64405710 -85111327 + L1MD3 LINE L1 7555 7795 -200 5 1076 27 62 0 0 chr6 64406529 64406577 -85110460 + AT_rich Low_complexity Low_complexity 1 48 0 5 1076 652 225 45 60 chr6 64406905 64407170 -85109867 + Lx9 LINE L1 7377 7637 -7 5 1076 30 27 0 0 chr6 64409526 64409563 -85107474 + AT_rich Low_complexity Low_complexity 1 37 0 5 1076 347 246 74 170 chr6 64411330 64411550 -85105487 + B3A SINE B2 11 197 -1 5 1076 430 223 34 59 chr6 64412388 64412507 -85104530 - PB1D9 SINE Alu 0 120 5 5 1076 24 0 0 0 chr6 64412554 64412578 -85104459 + AT_rich Low_complexity Low_complexity 1 24 0 5 1076 5345 50 0 9 chr6 64412581 64413250 -85103787 - L1_Mus1 LINE L1 0 6567 5905 5 1076 380 289 43 26 chr6 64414692 64414809 -85102228 + RSINE1 SINE B4 47 165 0 5 1076 23 92 0 0 chr6 64414828 64414893 -85102144 + AT_rich Low_complexity Low_complexity 1 65 0 5 1076 1021 88 0 0 chr6 64415000 64415137 -85101900 - B1_Mm SINE Alu -9 138 2 5 1076 186 265 204 57 chr6 64416391 64416479 -85100558 + MIRb SINE MIR 38 138 -130 5 1076 286 336 72 14 chr6 64416652 64416791 -85100246 - RMER15 LTR ERVL -5 570 424 5 1076 271 284 35 99 chr6 64416887 64417059 -85099978 - RMER15 LTR ERVL -414 161 1 5 1076 243 0 0 0 chr6 64417073 64417100 -85099937 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1076 947 162 38 32 chr6 64417104 64417289 -85099748 + B2_Mm2 SINE B2 1 186 -9 5 1076 189 107 0 0 chr6 64417870 64417898 -85099139 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1076 205 338 0 25 chr6 64417898 64417977 -85099060 - L3 LINE CR1 -618 3871 3795 5 1076 180 171 73 0 chr6 64418076 64418117 -85098920 - L3 LINE CR1 -876 3613 3570 5 1076 22 0 0 0 chr6 64418397 64418419 -85098618 + AT_rich Low_complexity Low_complexity 1 22 0 5 1076 708 248 7 0 chr6 64418523 64418664 -85098373 - B1_Mus2 SINE Alu 0 147 6 5 1076 320 238 132 42 chr6 64419096 64419285 -85097752 - L1MC1 LINE L1 -9 6324 6119 5 1076 239 276 10 0 chr6 64419418 64419516 -85097521 + GA-rich Low_complexity Low_complexity 3 101 0 5 1076 1384 280 52 15 chr6 64419551 64420159 -85096878 - L1MC1 LINE L1 -207 6126 5499 5 1076 412 246 64 32 chr6 64420271 64420489 -85096548 - L1MC1 LINE L1 -760 5386 5162 5 1076 650 257 126 10 chr6 64420520 64420825 -85096212 - L1MC1 LINE L1 -1116 5030 4691 5 1076 201 308 27 63 chr6 64420964 64421075 -85095962 - L3 LINE CR1 -2433 2056 1950 5 1076 850 110 14 49 chr6 64421579 64421601 -85095436 - B2_Mm2 SINE B2 -17 178 163 5 1076 492 62 0 0 chr6 64421601 64421665 -85095372 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 5 1076 850 110 14 49 chr6 64421665 64421785 -85095252 - B2_Mm2 SINE B2 -33 162 41 5 1076 531 0 0 0 chr6 64422569 64422628 -85094409 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1076 322 305 91 19 chr6 64423762 64423916 -85093121 - Kanga11a DNA Tc2 -181 789 625 5 1076 1118 220 23 9 chr6 64423947 64424167 -85092870 + MTD LTR MaLR 1 223 -196 5 1076 12232 71 31 59 chr6 64424167 64426026 -85091011 - RLTR22_Mus LTR ERVK 0 1808 1 5 1076 805 172 147 6 chr6 64426026 64426196 -85090841 + MTD LTR MaLR 218 411 -8 5 1076 5893 39 1 0 chr6 64426282 64426981 -85090056 + L1Md_T LINE L1 5882 6581 -1 5 1076 566 326 7 0 chr6 64427006 64427144 -85089893 - ID_B1 SINE B4 -7 217 79 5 1076 23 0 0 0 chr6 64427421 64427444 -85089593 + AT_rich Low_complexity Low_complexity 1 23 0 5 1076 560 281 22 0 chr6 64427714 64427849 -85089188 - B1_Mur1 SINE Alu -2 147 10 5 1076 268 352 37 0 chr6 64428218 64428326 -85088711 + MIR SINE MIR 24 135 -127 5 1076 3326 130 22 18 chr6 64428474 64429021 -85088016 + Lx4A LINE L1 6508 7056 -2 5 1076 249 346 82 32 chr6 64429932 64430090 -85086947 + MIRm SINE MIR 5 170 -106 5 1076 183 306 0 0 chr6 64430406 64430455 -85086582 - L2c LINE L2 -98 3289 3241 5 1076 2990 66 18 0 chr6 64431086 64431479 -85085558 + MTB LTR MaLR 1 400 0 5 1076 192 316 90 94 chr6 64431632 64431866 -85085171 + L2 LINE L2 2724 2956 -463 5 1076 521 30 15 0 chr6 64431907 64431974 -85085063 + (TTTC)n Simple_repeat Simple_repeat 1 68 0 5 1076 241 281 23 107 chr6 64432142 64432276 -85084761 - MIR SINE MIR -94 174 49 5 1076 739 297 55 33 chr6 64432736 64433102 -85083935 + Lx9 LINE L1 7093 7466 -178 5 1076 324 0 0 0 chr6 64433104 64433140 -85083897 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1076 4529 123 13 3 chr6 64433263 64433950 -85083087 + Lx2 LINE L1 6304 6997 0 5 1076 260 70 23 0 chr6 64434556 64434599 -85082438 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5 1076 25 0 0 0 chr6 64434842 64434867 -85082170 + AT_rich Low_complexity Low_complexity 1 25 0 5 1076 450 0 0 0 chr6 64435757 64435807 -85081230 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1076 432 0 0 0 chr6 64435919 64435967 -85081070 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1076 232 310 0 78 chr6 64437582 64437659 -85079378 + MIR3 SINE MIR 87 157 -51 5 1076 269 290 0 61 chr6 64437960 64438059 -85078978 - MLT1H2 LTR MaLR -335 154 62 5 1076 432 0 0 0 chr6 64438102 64438150 -85078887 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1076 212 327 11 65 chr6 64438203 64438327 -85078710 + MIR SINE MIR 15 134 -134 5 1076 678 229 28 0 chr6 64438899 64439043 -85077994 + B1_Mur2 SINE Alu 1 148 -1 5 1076 180 0 0 0 chr6 64439096 64439116 -85077921 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 5 1076 846 214 14 45 chr6 64439526 64439746 -85077291 + B3 SINE B2 1 213 -3 5 1076 197 280 29 114 chr6 64440349 64440454 -85076583 - L2c LINE L2 0 3387 3292 5 1076 1329 284 56 19 chr6 64441042 64441560 -85075477 - Arthur1 DNA Tip100 0 3947 3411 5 1076 489 17 0 0 chr6 64441798 64441856 -85075181 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 5 1076 7475 64 1 2 chr6 64442117 64443412 -85073625 - L1Md_F2 LINE L1 -2 6580 5288 5 1076 2994 61 2 10 chr6 64443543 64443938 -85073099 - L1Md_F3 LINE L1 -14 6570 6179 6 1076 6894 84 3 113 chr6 64443938 64444370 -85072667 - L1Md_F2 LINE L1 -597 5286 4851 5 1076 966 85 0 47 chr6 64444368 64444516 -85072521 + L1Md_F2 LINE L1 2885 3025 -2858 6 1076 1303 14 0 0 chr6 64444482 64444628 -85072409 + L1Md_T LINE L1 5441 5586 -297 6 1076 8856 8 0 4 chr6 64444628 64445628 -85071409 + L1Md_T LINE L1 5587 6582 0 6 1076 18996 78 4 1 chr6 64445637 64448221 -85068816 + L1Md_F2 LINE L1 2996 5586 -297 6 1076 7004 92 7 5 chr6 64448221 64449204 -85067833 + L1Md_F2 LINE L1 5587 6571 -11 6 1076 2729 121 8 0 chr6 64449204 64449600 -85067437 - MusHAL1 LINE L1 -2835 519 121 6 1076 1378 149 24 0 chr6 64449711 64449919 -85067118 - L1VL4 LINE L1 -5980 322 110 6 1076 267 122 0 0 chr6 64450096 64450145 -85066892 + (TTTTG)n Simple_repeat Simple_repeat 4 52 0 6 1076 234 192 19 19 chr6 64450198 64450251 -85066786 + (TCTTG)n Simple_repeat Simple_repeat 5 57 0 6 1076 292 228 35 0 chr6 64450370 64450427 -85066610 + MER21B LTR ERV1 25 83 -780 6 1076 674 289 33 28 chr6 64450711 64450925 -85066112 - B3 SINE B2 0 216 2 6 1076 438 321 58 16 chr6 64451304 64451494 -85065543 - MLT1D LTR MaLR 0 505 308 6 1076 1440 252 53 5 chr6 64451556 64451951 -85065086 + MTD LTR MaLR 4 417 -2 6 1076 464 339 93 4 chr6 64452449 64452674 -85064363 - MLT1C LTR MaLR -7 460 216 6 1076 297 169 0 0 chr6 64453330 64453389 -85063648 + GA-rich Low_complexity Low_complexity 3 61 0 6 1076 29 0 0 0 chr6 64453713 64453742 -85063295 + AT_rich Low_complexity Low_complexity 1 29 0 6 1076 1878 200 96 61 chr6 64453767 64453859 -85063178 - Lx9 LINE L1 -48 7596 7510 6 1076 441 0 0 0 chr6 64453859 64453908 -85063129 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1076 1878 200 96 61 chr6 64453908 64454357 -85062680 - Lx9 LINE L1 -135 7509 7037 6 1076 336 257 101 31 chr6 64454592 64454718 -85062319 - ORR1E LTR MaLR -230 164 33 6 1076 2335 212 47 18 chr6 64455247 64455866 -85061171 - L1_Mur3 LINE L1 -371 5509 4873 6 1076 225 367 48 42 chr6 64455909 64456074 -85060963 - MIRb SINE MIR -41 227 62 6 1076 34095 88 9 2 chr6 64456373 64462716 -85054321 - L1Md_F2 LINE L1 -3 6579 189 6 1076 252 0 0 0 chr6 64462801 64462829 -85054208 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1076 309 51 0 0 chr6 64464495 64464534 -85052503 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1076 444 86 0 0 chr6 64464933 64465003 -85052034 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1076 423 0 0 0 chr6 64465003 64465050 -85051987 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1076 24 0 0 0 chr6 64465233 64465257 -85051780 + AT_rich Low_complexity Low_complexity 1 24 0 6 1076 251 224 26 13 chr6 64466358 64466435 -85050602 + L1M5 LINE L1 5164 5241 -905 6 1076 25 0 0 0 chr6 64466508 64466533 -85050504 + AT_rich Low_complexity Low_complexity 1 25 0 6 1076 276 291 117 42 chr6 64466605 64466845 -85050192 + L1M5 LINE L1 5395 5652 -512 6 1076 530 272 0 50 chr6 64466852 64467034 -85050003 - L1M2 LINE L1 -3010 3133 2961 6 1076 577 254 141 14 chr6 64467263 64467363 -85049674 - L1_Mur3 LINE L1 -3484 2396 2278 6 1076 216 0 0 0 chr6 64467363 64467387 -85049650 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1076 577 254 141 14 chr6 64467387 64467569 -85049468 - L1_Mur3 LINE L1 -3603 2277 2079 6 1076 307 323 64 25 chr6 64467613 64467848 -85049189 - L1_Rod LINE L1 -3817 2030 1787 6 1076 378 324 88 0 chr6 64467854 64467956 -85049081 + B3A SINE B2 3 113 -85 6 1076 225 237 34 0 chr6 64468433 64468492 -85048545 - MER3 DNA MER1_type -6 203 143 6 1076 784 267 59 102 chr6 64468498 64468648 -85048389 - MTE2b LTR MaLR -2 377 221 6 1076 1054 68 0 75 chr6 64468648 64468808 -85048229 + B1_Mus1 SINE Alu 1 148 0 6 1076 784 267 59 102 chr6 64468808 64469049 -85047988 - MTE2b LTR MaLR -159 220 3 6 1076 1023 85 14 0 chr6 64469064 64469205 -85047832 + B1_Mm SINE Alu 5 147 0 6 1076 427 338 0 13 chr6 64469208 64469367 -85047670 - MER3 DNA MER1_type -51 158 2 6 1076 301 387 78 5 chr6 64470870 64471088 -85045949 - L1M5 LINE L1 -578 5546 5313 6 1076 347 284 0 0 chr6 64471457 64471538 -85045499 + ID4_ SINE ID 2 82 -1 6 1076 623 182 149 0 chr6 64472042 64472163 -85044874 - B1_Mur2 SINE Alu -1 148 10 6 1076 1729 180 56 8 chr6 64472565 64472956 -85044081 - RMER17C LTR ERVK 0 410 1 6 1076 261 59 0 0 chr6 64472956 64472990 -85044047 - RMER17C-int LTR ERVK 0 3238 3205 6 1076 3243 58 29 0 chr6 64472992 64473424 -85043613 - L1Md_F2 LINE L1 -536 6461 5674 6 1076 3403 63 2 5 chr6 64473428 64473861 -85043176 + L1Md_F2 LINE L1 6138 6569 -13 6 1076 3717 136 122 147 chr6 64473873 64474464 -85042573 - RMER17C-int LTR ERVK -19 3219 2618 6 1076 256 222 0 0 chr6 64474464 64474509 -85042528 + LSU-rRNA_Hsa rRNA rRNA 4202 4246 -789 6 1076 3717 136 122 147 chr6 64474509 64474893 -85042144 - RMER17C-int LTR ERVK -19 2617 2225 6 1076 1740 242 37 43 chr6 64475343 64475603 -85041434 - Lx7 LINE L1 -665 7031 6762 6 1076 222 37 0 0 chr6 64475603 64475630 -85041407 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1076 1740 242 37 43 chr6 64475630 64475853 -85041184 - Lx7 LINE L1 -935 6761 6551 6 1076 525 115 0 0 chr6 64476786 64476873 -85040164 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 1076 335 225 0 0 chr6 64478884 64478964 -85038073 - Lx7 LINE L1 0 7696 7617 6 1076 1652 326 102 7 chr6 64478978 64479048 -85037989 - Lx8 LINE L1 -12 7461 7374 6 1076 2450 193 23 20 chr6 64479048 64479607 -85037430 - RLTR31_Mm LTR ERVK 0 561 1 6 1076 1652 326 102 7 chr6 64479607 64480418 -85036619 - Lx8 LINE L1 -100 7373 6497 6 1076 3136 46 0 20 chr6 64481021 64481422 -85035615 - L1Md_F3 LINE L1 -2 6582 6190 6 1076 537 245 40 7 chr6 64481613 64481761 -85035276 + Lx4B LINE L1 6885 7037 -21 6 1076 261 0 0 0 chr6 64481761 64481790 -85035247 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6 1076 25 75 0 0 chr6 64481875 64481928 -85035109 + AT_rich Low_complexity Low_complexity 1 53 0 6 1076 534 205 151 32 chr6 64481929 64482055 -85034982 + B1_Mur2 SINE Alu 9 149 0 6 1076 299 65 22 0 chr6 64482055 64482101 -85034936 + (GAAAA)n Simple_repeat Simple_repeat 4 50 0 6 1076 210 118 0 0 chr6 64482236 64482270 -85034767 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1076 2274 40 22 0 chr6 64482334 64482608 -85034429 + L1Md_F3 LINE L1 6184 6463 -121 6 1076 265 286 101 2 chr6 64484629 64484750 -85032287 - MIR SINE MIR -78 190 49 6 1076 326 194 0 0 chr6 64485192 64485254 -85031783 - B3A SINE B2 -82 116 55 6 1076 426 234 129 62 chr6 64485705 64485883 -85031154 - MIR SINE MIR -33 229 40 6 1076 405 267 145 6 chr6 64486339 64486505 -85030532 - MER5A DNA MER1_type 0 189 1 6 134 1777 215 33 40 chr6 64487290 64487712 -85029325 - MTD LTR MaLR 0 419 1 6 1077 423 0 0 0 chr6 64487844 64487891 -85029146 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1077 23 33 0 0 chr6 64488432 64488462 -85028575 + AT_rich Low_complexity Low_complexity 1 30 0 6 1077 384 255 19 10 chr6 64489987 64490090 -85026947 + MLT1B LTR MaLR 94 197 -193 6 1077 260 263 0 0 chr6 64491047 64491104 -85025933 + GA-rich Low_complexity Low_complexity 1 57 0 6 1077 281 375 0 0 chr6 64491471 64491559 -85025478 - Tigger7 DNA MER2_type 0 2491 2404 6 1077 325 277 0 24 chr6 64491566 64491651 -85025386 - Tigger7 DNA MER2_type -1448 1043 961 6 1077 912 289 83 0 chr6 64491649 64491915 -85025122 - Tigger7 DNA MER2_type -2143 348 61 6 1077 251 308 0 32 chr6 64493390 64493484 -85023553 + PB1D10 SINE Alu 21 111 -6 6 1077 4572 65 3 0 chr6 64494971 64495553 -85021484 - L1Md_F2 LINE L1 -2 6580 5997 6 1077 2714 124 57 5 chr6 64495837 64496273 -85020764 - Lx3B LINE L1 -3 6970 6512 6 1077 267 333 15 0 chr6 64496295 64496361 -85020676 + B1F1 SINE Alu 1 67 -82 6 1077 1416 44 66 0 chr6 64497981 64498141 -85018896 + B2_Mm1a SINE B2 1 160 -33 6 1077 270 0 0 0 chr6 64498141 64498171 -85018866 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 1077 1416 44 66 0 chr6 64498171 64498191 -85018846 + B2_Mm1a SINE B2 161 191 -2 6 1077 232 338 17 21 chr6 64498323 64498429 -85018608 - MIRc SINE MIR -139 129 15 6 1077 27 49 0 0 chr6 64500155 64500196 -85016841 + AT_rich Low_complexity Low_complexity 1 41 0 1 1077 523 264 28 21 chr6 64500196 64500339 -85016698 - LTR40b LTR ERVL 0 462 319 2 1077 358 369 31 18 chr6 64500642 64500805 -85016232 - MER82 DNA MER2_type -6 647 483 3 1077 264 265 11 57 chr6 64500775 64500863 -85016174 - MTEb LTR MaLR -23 356 273 4 1077 1052 280 59 6 chr6 64501503 64501823 -85015214 + Lx8 LINE L1 6290 6626 -847 5 1077 577 206 138 20 chr6 64501830 64502029 -85015008 - ORR1D1 LTR MaLR -6 364 70 6 1077 807 294 36 43 chr6 64502070 64502375 -85014662 + Lx8 LINE L1 6623 6925 -548 5 1077 279 173 0 0 chr6 64502615 64502667 -85014370 + (TA)n Simple_repeat Simple_repeat 2 53 0 7 1077 814 276 99 32 chr6 64502667 64503011 -85014026 - MER82 DNA MER2_type -206 447 81 3 1077 441 0 0 0 chr6 64503032 64503081 -85013956 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1077 4247 50 0 6 chr6 64503181 64503705 -85013332 + L1Md_F2 LINE L1 6062 6582 0 9 1077 432 267 70 71 chr6 64503742 64504004 -85013033 + L2b LINE L2 2833 3091 -284 1 1077 201 162 0 0 chr6 64504183 64504220 -85012817 + CT-rich Low_complexity Low_complexity 1 37 0 1 1077 916 199 114 138 chr6 64504233 64504611 -85012426 - ORR1D1 LTR MaLR -1 373 5 1 1077 198 159 44 22 chr6 64505913 64506003 -85011034 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 1077 280 336 17 0 chr6 64506812 64506928 -85010109 - L2a LINE L2 -287 3139 3022 1 1077 5833 67 25 9 chr6 64507005 64507775 -85009262 - L1_Mus3 LINE L1 -7 6631 5850 1 1077 642 25 0 0 chr6 64507775 64507854 -85009183 + L1_Mus3 LINE L1 5687 5765 -871 1 1077 963 96 6 76 chr6 64507854 64507947 -85009090 + B1_Mus1 SINE Alu 2 89 -59 1 1077 2589 86 2 88 chr6 64507947 64508370 -85008667 - RLTR10 LTR ERVK -3 387 1 1 1077 963 103 6 80 chr6 64508370 64508442 -85008595 + B1_Mus1 SINE Alu 65 148 0 1 1077 849 64 0 0 chr6 64508461 64508586 -85008451 + L1_Mus3 LINE L1 5737 5861 -723 1 1077 1039 313 90 17 chr6 64508655 64509299 -85007738 - Lx7 LINE L1 -594 7102 6403 1 1077 387 321 21 7 chr6 64509848 64509989 -85007048 - RMER15 LTR ERVL -12 563 421 2 1077 29 0 0 0 chr6 64510271 64510300 -85006737 + AT_rich Low_complexity Low_complexity 1 29 0 2 1077 732 268 154 11 chr6 64510374 64510849 -85006188 + L1M2 LINE L1 4767 5309 -834 2 1077 727 319 35 4 chr6 64510867 64511195 -85005842 + L1M2 LINE L1 5363 5699 -481 2 1077 222 156 0 0 chr6 64511717 64511762 -85005275 + A-rich Low_complexity Low_complexity 1 45 0 2 1077 450 80 87 17 chr6 64512169 64512284 -85004753 + (CAGAGA)n Simple_repeat Simple_repeat 2 124 0 2 1077 310 216 57 29 chr6 64513784 64513889 -85003148 - PB1D7 SINE Alu -11 109 2 2 1077 701 232 0 14 chr6 64513927 64514067 -85002970 - B1_Mur1 SINE Alu -3 146 9 2 1077 380 228 317 0 chr6 64514184 64514329 -85002708 + B3 SINE B2 1 191 -25 2 1077 574 259 0 36 chr6 64514689 64514801 -85002236 + B1_Mur1 SINE Alu 3 110 -39 2 1077 601 308 48 79 chr6 64514966 64515262 -85001775 + B4A SINE B4 5 291 -1 2 1077 231 88 0 0 chr6 64515270 64515304 -85001733 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1077 284 195 25 38 chr6 64515322 64515402 -85001635 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 3 1077 231 88 0 0 chr6 64515679 64515713 -85001324 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 3 1077 285 267 0 62 chr6 64515721 64515785 -85001252 - PB1D9 SINE Alu -58 62 3 3 1077 21 0 0 0 chr6 64515983 64516004 -85001033 + AT_rich Low_complexity Low_complexity 1 21 0 3 1077 1111 68 0 39 chr6 64517863 64518016 -84999021 + B1_Mus2 SINE Alu 1 147 0 3 1077 465 50 0 0 chr6 64518016 64518076 -84998961 + (A)n Simple_repeat Simple_repeat 1 60 0 3 1077 339 25 0 0 chr6 64521047 64521087 -84995950 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1077 199 125 35 35 chr6 64521129 64521187 -84995850 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 3 1077 205 395 39 7 chr6 64521387 64521540 -84995497 - MIR SINE MIR -12 250 93 3 1077 1180 206 52 28 chr6 64522347 64522637 -84994400 - RMER1B Other Other -2 1064 768 4 1077 1198 43 149 0 chr6 64523648 64523809 -84993228 - L1_Mus1 LINE L1 -1 6566 6382 4 1077 335 292 16 40 chr6 64523949 64524074 -84992963 - MER31A LTR ERV1 -143 342 221 4 1077 272 169 42 0 chr6 64525168 64525239 -84991798 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 4 1077 342 80 0 0 chr6 64525728 64525778 -84991259 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1077 573 259 121 17 chr6 64525926 64526099 -84990938 + ID_B1 SINE B4 1 191 -33 4 1077 1020 101 0 0 chr6 64526107 64526285 -84990752 + (TC)n Simple_repeat Simple_repeat 1 178 0 4 1077 246 32 0 0 chr6 64526285 64526316 -84990721 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 4 1077 331 304 27 76 chr6 64526319 64526504 -84990533 - Lx7 LINE L1 -1210 5766 5589 4 1077 491 264 43 30 chr6 64527432 64527747 -84989290 - L1M2 LINE L1 -681 5616 5290 4 1077 447 297 80 11 chr6 64527772 64528034 -84989003 - L1M2 LINE L1 -952 5191 4912 4 1077 1114 66 7 0 chr6 64528076 64528213 -84988824 - B1_Mus2 SINE Alu -9 138 1 5 1077 381 238 91 11 chr6 64528276 64528457 -84988580 + MLT1B LTR MaLR 86 333 -57 5 1077 352 327 44 26 chr6 64529002 64529115 -84987922 + ID_B1 SINE B4 101 215 -9 5 1077 1347 192 40 98 chr6 64529124 64529173 -84987864 - ORR1A4 LTR MaLR -2 327 270 5 1077 5848 94 8 5 chr6 64529173 64530007 -84987030 - L1_Mus3 LINE L1 -7 6631 5795 5 1077 1347 192 40 98 chr6 64530007 64530304 -84986733 - ORR1A4 LTR MaLR -60 269 2 5 1077 351 0 0 0 chr6 64530306 64530345 -84986692 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1077 24 32 0 0 chr6 64530473 64530504 -84986533 + AT_rich Low_complexity Low_complexity 1 31 0 5 1077 459 0 0 0 chr6 64530555 64530606 -84986431 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1077 308 265 97 85 chr6 64530616 64530633 -84986404 - B2_Mm1t SINE B2 -23 170 157 5 1077 3482 23 2 0 chr6 64530633 64531028 -84986009 - MTA_Mm LTR MaLR 0 396 1 5 1077 466 265 97 85 chr6 64531028 64531175 -84985862 - B3 SINE B2 -47 169 4 5 1077 302 265 12 4 chr6 64531514 64531607 -84985430 - L1M5 LINE L1 -473 5651 5556 6 1077 276 333 76 8 chr6 64532275 64532393 -84984644 + MIRb SINE MIR 23 148 -120 6 1077 2136 159 14 3 chr6 64532439 64532798 -84984239 - ORR1D1 LTR MaLR -7 367 5 6 1077 229 272 10 10 chr6 64532952 64533056 -84983981 + (TA)n Simple_repeat Simple_repeat 2 105 0 6 1077 485 270 0 0 chr6 64533139 64533250 -84983787 + PB1D7 SINE Alu 3 113 -7 6 1077 266 236 244 0 chr6 64533592 64533719 -84983318 - MTE-int LTR MaLR -72 1508 1351 6 1077 368 266 0 0 chr6 64533747 64533826 -84983211 + B3 SINE B2 54 132 -84 6 1077 6914 122 128 4 chr6 64534042 64536131 -84980906 - L1Md_F2 LINE L1 -12 6570 4161 6 1077 931 69 0 0 chr6 64536128 64536258 -84980779 + L1_Mm LINE L1 5082 5211 -672 6 1077 500 291 191 12 chr6 64536804 64537061 -84979976 - RMER15 LTR ERVL 0 575 273 6 1077 429 104 0 0 chr6 64537361 64537438 -84979599 + (TCTCTG)n Simple_repeat Simple_repeat 4 80 0 7 1077 270 331 93 37 chr6 64537613 64537895 -84979142 - L2a LINE L2 -176 3250 2958 7 1077 836 203 124 5 chr6 64538158 64538351 -84978686 - B3 SINE B2 0 216 1 7 1077 923 205 265 23 chr6 64539123 64539432 -84977605 - ORR1C2 LTR MaLR 0 384 1 7 1077 873 61 0 44 chr6 64539520 64539657 -84977380 + L1Md_F2 LINE L1 6433 6563 -19 7 1077 2349 105 6 0 chr6 64541496 64541821 -84975216 + ORR1A2 LTR MaLR 1 327 0 7 1077 3200 44 0 3 chr6 64542670 64543056 -84973981 - L1_Mus1 LINE L1 -1 6566 6182 7 1077 2429 75 113 5 chr6 64543056 64543437 -84973600 + L1_Mus1 LINE L1 5709 6133 -505 7 1077 4541 40 0 6 chr6 64543705 64544252 -84972785 + L1Md_F2 LINE L1 6026 6569 -13 7 1077 360 207 0 0 chr6 64544493 64544551 -84972486 - PB1D10 SINE Alu -47 70 13 7 1077 505 228 86 6 chr6 64544848 64545011 -84972026 + L1MA8 LINE L1 6084 6259 -32 7 1077 516 243 0 0 chr6 64545255 64545362 -84971675 + PB1D10 SINE Alu 2 108 -9 8 1077 506 243 6 0 chr6 64545394 64545571 -84971466 + (CA)n Simple_repeat Simple_repeat 1 178 0 8 1077 428 246 0 33 chr6 64545582 64545704 -84971333 + (CATA)n Simple_repeat Simple_repeat 4 121 0 8 1077 22 35 0 0 chr6 64546125 64546154 -84970883 + AT_rich Low_complexity Low_complexity 1 29 0 8 1077 214 354 12 24 chr6 64546903 64546987 -84970050 - MIRc SINE MIR -125 143 61 8 1077 183 80 0 0 chr6 64547335 64547360 -84969677 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1077 834 126 37 0 chr6 64547653 64547788 -84969249 - URR1B DNA MER1_type 0 225 86 8 1077 411 259 175 17 chr6 64547654 64547831 -84969206 + CYRA11_Mm Unknown Y-chromosome 172 376 -241 8 1077 425 191 75 42 chr6 64548866 64548986 -84968051 + B3 SINE B2 92 215 -1 8 1077 233 196 105 18 chr6 64549011 64549068 -84967969 - B3A SINE B2 -136 62 1 8 1077 25 0 0 0 chr6 64549076 64549101 -84967936 + AT_rich Low_complexity Low_complexity 1 25 0 9 1077 277 390 59 29 chr6 64550094 64550332 -84966705 - L2a LINE L2 0 3426 3182 9 1077 549 335 68 30 chr6 64550642 64551075 -84965962 - L1M5 LINE L1 -757 5389 4935 9 1077 1115 198 13 13 chr6 64551299 64551524 -84965513 - URR1B DNA MER1_type 0 225 1 9 1077 451 308 28 7 chr6 64551790 64551934 -84965103 - B1_Mur1 SINE Alu 0 149 3 9 1077 253 283 0 32 chr6 64552023 64552085 -84964952 + ID4_ SINE ID 24 83 0 9 1077 180 211 0 50 chr6 64552170 64552210 -84964827 + L3b LINE CR1 192 229 -253 9 1077 7291 61 9 8 chr6 64553079 64554056 -84962981 - L1_Mus2 LINE L1 -2 6564 5587 9 1077 618 51 0 0 chr6 64556465 64556543 -84960494 + (TCC)n Simple_repeat Simple_repeat 2 79 0 9 1077 553 180 154 15 chr6 64556569 64556699 -84960338 - B1_Mus1 SINE Alu 0 148 1 9 1077 2134 116 24 59 chr6 64557010 64557349 -84959688 - ORR1A4 LTR MaLR 0 329 3 1 1077 409 272 203 14 chr6 64558045 64558183 -84958854 + B3A SINE B2 3 166 -32 1 1077 5831 58 53 14 chr6 64559008 64559745 -84957292 + L1Md_F2 LINE L1 5805 6570 -12 1 1077 2337 161 18 8 chr6 64559935 64560318 -84956719 + ORR1B1 LTR MaLR 5 391 -3 1 1077 3287 227 87 17 chr6 64560318 64561391 -84955646 + ORR1B1-int LTR MaLR 5 1284 -225 1 1077 483 100 0 0 chr6 64561391 64561461 -84955576 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1077 3287 208 80 6 chr6 64561461 64561526 -84955511 + ORR1B1-int LTR MaLR 1285 1354 -155 1 1077 1871 184 30 3 chr6 64561510 64561842 -84955195 + ORR1B1 LTR MaLR 54 394 0 1 1077 396 0 0 0 chr6 64563253 64563297 -84953740 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 1 1077 746 260 82 41 chr6 64563375 64563620 -84953417 + MER2 DNA MER2_type 90 344 -1 1 1077 279 0 0 0 chr6 64564544 64564575 -84952462 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1077 191 314 108 54 chr6 64564768 64564879 -84952158 + MIRm SINE MIR 127 243 -33 1 1077 227 103 26 0 chr6 64564906 64564945 -84952092 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 1 1077 327 333 31 12 chr6 64564958 64565119 -84951918 - L2 LINE L2 -996 2423 2260 1 1077 772 312 113 38 chr6 64565511 64565881 -84951156 - MER76 LTR ERVL -293 398 1 1 1077 1676 243 17 24 chr6 64565917 64566339 -84950698 + MTD LTR MaLR 1 419 0 1 1077 192 179 0 0 chr6 64570792 64570831 -84946206 + CT-rich Low_complexity Low_complexity 2 40 0 1 1077 917 150 13 26 chr6 64571148 64571299 -84945738 + B1_Mur3 SINE Alu 1 149 0 1 1077 276 30 0 0 chr6 64572020 64572053 -84944984 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1077 363 44 0 0 chr6 64572505 64572550 -84944487 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1077 184 307 78 22 chr6 64572823 64572913 -84944124 + MIR SINE MIR 93 187 -75 1 1077 240 283 0 0 chr6 64573759 64573812 -84943225 + ID4_ SINE ID 31 83 0 1 1077 610 310 25 0 chr6 64574071 64574310 -84942727 - Charlie19a DNA Charlie -35 351 107 1 1077 426 39 0 0 chr6 64574995 64575047 -84941990 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1077 6298 78 2 55 chr6 64576236 64577093 -84939944 - Lx3_Mus LINE L1 -8 7001 6190 1 1077 1353 170 13 9 chr6 64578133 64578358 -84938679 + URR1A DNA MER1_type 1 226 0 1 1077 411 21 0 0 chr6 64579039 64579087 -84937950 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1077 210 118 0 0 chr6 64579099 64579133 -84937904 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1 1077 350 348 17 25 chr6 64579161 64579279 -84937758 - RSINE1 SINE B4 -47 118 2 1 1077 543 118 0 0 chr6 64579332 64579417 -84937620 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1077 729 333 17 44 chr6 64579423 64579721 -84937316 + B4A SINE B4 3 292 0 1 1077 738 119 0 0 chr6 64580311 64580454 -84936583 + (TC)n Simple_repeat Simple_repeat 2 144 0 1 1077 234 0 0 0 chr6 64580454 64580480 -84936557 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1077 4800 114 67 31 chr6 64580805 64581538 -84935499 - Lx4A LINE L1 -4 7054 6296 1 1077 2783 133 30 17 chr6 64581538 64581674 -84935363 + Lx4A LINE L1 5409 5554 -323 1 1077 315 0 0 0 chr6 64581674 64581709 -84935328 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1077 4212 116 20 34 chr6 64581709 64582425 -84934612 + Lx4A LINE L1 5555 6268 -790 1 1077 536 223 73 16 chr6 64584738 64584861 -84932176 - MLT1A LTR MaLR -9 365 236 1 1077 347 245 83 89 chr6 64584885 64585042 -84931995 - MLT1A LTR MaLR -213 161 6 1 1077 316 267 27 54 chr6 64585196 64585307 -84931730 + PB1D10 SINE Alu 10 117 0 1 1077 216 0 0 0 chr6 64585307 64585331 -84931706 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1077 494 312 102 60 chr6 64586267 64586533 -84930504 - B4 SINE B4 -10 282 6 1 1077 522 317 91 56 chr6 64588733 64589074 -84927963 - MLT1A LTR MaLR -21 353 1 1 1077 250 223 61 0 chr6 64592552 64592622 -84924415 + MIR SINE MIR 74 148 -120 1 1077 1021 164 111 0 chr6 64592913 64593102 -84923935 + URR1B DNA MER1_type 15 224 -1 1 1077 549 329 7 0 chr6 64593102 64593252 -84923785 + B3A SINE B2 43 193 -5 1 1077 29 0 0 0 chr6 64595279 64595308 -84921729 + AT_rich Low_complexity Low_complexity 1 29 0 1 1077 8393 33 0 11 chr6 64595308 64596482 -84920555 - L1Md_F2 LINE L1 -14 6568 5408 1 1077 1466 238 26 14 chr6 64596856 64597205 -84919832 + ORR1D1 LTR MaLR 1 353 -21 1 1077 409 328 184 37 chr6 64597226 64597332 -84919705 + MamGypLTR2 LTR Gypsy 759 1187 -2 1 1077 459 308 153 30 chr6 64597332 64597600 -84919437 + LTR81B LTR ERV1? 1091 1391 -2 1 1077 252 0 0 0 chr6 64597979 64598007 -84919030 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1077 6211 91 75 13 chr6 64598693 64599605 -84917432 - Lx3C LINE L1 -2 6974 6007 1 1077 387 0 0 0 chr6 64599707 64599750 -84917287 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1077 240 35 0 0 chr6 64600179 64600208 -84916829 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1077 383 254 140 53 chr6 64601351 64601501 -84915536 + MER2 DNA MER2_type 4 166 -179 1 1077 1235 207 113 73 chr6 64601558 64601755 -84915282 - ORR1D2 LTR MaLR -12 358 136 1 1077 1357 73 0 0 chr6 64601755 64601933 -84915104 + L1Md_A LINE L1 6405 6582 0 1 1077 1235 207 113 73 chr6 64601933 64602079 -84914958 - ORR1D2 LTR MaLR -235 135 1 1 1077 426 118 59 0 chr6 64602441 64602509 -84914528 - L1MB1 LINE L1 -55 6113 6042 1 1077 342 0 0 0 chr6 64602513 64602551 -84914486 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1077 894 291 47 18 chr6 64602584 64602861 -84914176 - B4 SINE B4 -4 288 4 1 1077 7802 10 9 0 chr6 64603376 64604191 -84912846 - RLTR13B2 LTR ERVK 0 822 1 1 1077 25188 117 54 22 chr6 64604204 64605781 -84911256 - ETnERV3-int LTR ERVK -1174 6070 4010 1 1077 276 30 0 0 chr6 64605781 64605814 -84911223 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1 1077 25188 129 40 37 chr6 64605814 64610269 -84906768 - ETnERV3-int LTR ERVK -1799 4009 188 1 1077 312 287 0 0 chr6 64610454 64610555 -84906482 - ETnERV3-int LTR ERVK -6874 379 279 1 1077 1192 109 5 27 chr6 64610627 64610815 -84906222 - ETnERV3-int LTR ERVK -5622 186 3 1 1077 7865 10 4 0 chr6 64610817 64611636 -84905401 - RLTR13B2 LTR ERVK 0 822 1 1 1077 268 270 126 0 chr6 64611913 64612024 -84905013 - MER115 DNA Tip100 -24 669 545 1 1077 222 37 0 0 chr6 64614060 64614087 -84902950 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1077 198 0 0 0 chr6 64614181 64614203 -84902834 + (GTTTG)n Simple_repeat Simple_repeat 1 22 0 1 1077 189 0 0 0 chr6 64615371 64615392 -84901645 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1077 26 0 0 0 chr6 64615773 64615799 -84901238 + AT_rich Low_complexity Low_complexity 1 26 0 1 1077 205 274 0 31 chr6 64616391 64616455 -84900582 + CT-rich Low_complexity Low_complexity 1 62 0 1 1077 208 200 22 0 chr6 64616977 64617022 -84900015 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1078 312 27 0 0 chr6 64621458 64621495 -84895542 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1078 858 167 44 16 chr6 64621630 64621813 -84895224 + B2_Mm2 SINE B2 2 189 -6 1 1078 6069 48 3 7 chr6 64621846 64622599 -84894438 + L1Md_F2 LINE L1 5833 6582 0 1 1078 194 396 62 48 chr6 64623961 64624335 -84892702 - L2a LINE L2 -86 3340 2962 1 1078 374 269 58 16 chr6 64624788 64624909 -84892128 + RSINE1 SINE B4 3 128 -37 1 1078 192 158 0 0 chr6 64624955 64624993 -84892044 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1078 478 261 0 25 chr6 64625839 64625957 -84891080 + B1_Mur3 SINE Alu 35 149 0 1 1078 437 227 18 35 chr6 64626846 64626960 -84890077 + B3A SINE B2 87 198 0 1 1078 272 330 36 9 chr6 64626974 64627084 -84889953 - MIRc SINE MIR -138 130 18 1 1078 791 259 63 11 chr6 64627856 64628126 -84888911 + Lx7 LINE L1 5603 5886 -1810 1 1078 332 23 0 22 chr6 64628589 64628634 -84888403 + HAL1-3A_ME LINE L1 1975 2018 -840 1 1078 259 259 37 12 chr6 64629163 64629245 -84887792 - L2c LINE L2 -94 3293 3210 1 1078 2486 46 0 0 chr6 64629608 64629910 -84887127 + L1Md_F2 LINE L1 6281 6582 0 1 1078 189 0 0 0 chr6 64630000 64630021 -84887016 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1078 261 75 0 0 chr6 64630158 64630198 -84886839 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 1 1078 634 104 0 31 chr6 64630575 64630704 -84886333 + (CAGAGA)n Simple_repeat Simple_repeat 2 126 0 1 1078 261 57 0 0 chr6 64630860 64630895 -84886142 + (GTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1078 219 305 0 0 chr6 64631614 64631673 -84885364 + PB1D10 SINE Alu 40 98 -19 1 1078 236 326 0 30 chr6 64631683 64631784 -84885253 + GA-rich Low_complexity Low_complexity 4 101 0 1 1078 405 191 193 34 chr6 64631803 64631922 -84885115 - Lx8 LINE L1 -529 6944 6807 1 1078 724 301 43 23 chr6 64631916 64632219 -84884818 + Lx8 LINE L1 6941 7249 -224 1 1078 2175 232 73 61 chr6 64632226 64632868 -84884169 + Lx7 LINE L1 7031 7680 -16 1 1078 229 240 20 0 chr6 64632920 64632970 -84884067 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1 1078 252 329 12 56 chr6 64634208 64634369 -84882668 + MIRb SINE MIR 86 239 -29 1 1078 247 219 31 0 chr6 64634891 64634955 -84882082 - ID4_ SINE ID -16 67 2 1 1078 192 40 0 0 chr6 64634966 64634991 -84882046 + (G)n Simple_repeat Simple_repeat 1 25 0 1 1078 240 35 0 0 chr6 64635996 64636025 -84881012 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1078 735 177 23 0 chr6 64636025 64636155 -84880882 - B1_Mur2 SINE Alu -10 139 7 1 1078 22 0 0 0 chr6 64636243 64636265 -84880772 + AT_rich Low_complexity Low_complexity 1 22 0 1 1078 295 287 99 0 chr6 64636286 64636387 -84880650 + ID_B1 SINE B4 105 215 -9 1 1078 1318 70 5 41 chr6 64636957 64637151 -84879886 + B2_Mm2 SINE B2 1 187 -8 1 1078 1564 115 4 34 chr6 64637248 64637510 -84879527 - MTC LTR MaLR -17 404 151 1 1078 268 29 0 0 chr6 64637508 64637542 -84879495 - MTC LTR MaLR -373 34 1 1 1078 186 43 0 0 chr6 64638825 64638848 -84878189 + (CCCCCT)n Simple_repeat Simple_repeat 3 25 0 1 1078 266 73 0 24 chr6 64639285 64639327 -84877710 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1 1078 342 45 0 0 chr6 64639471 64639515 -84877522 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1078 461 221 28 28 chr6 64639533 64639640 -84877397 - RSINE1 SINE B4 -56 109 3 1 1078 336 278 63 12 chr6 64640077 64640230 -84876807 - MLT1E3 LTR MaLR -113 567 387 2 1078 405 0 0 0 chr6 64640404 64640449 -84876588 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1078 259 286 39 63 chr6 64640673 64640800 -84876237 + MamGypLTR1a LTR Gypsy 425 548 -236 2 1078 257 0 30 0 chr6 64640922 64640955 -84876082 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1078 432 0 0 0 chr6 64641098 64641146 -84875891 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1078 1088 181 103 0 chr6 64641320 64641524 -84875513 + URR1B DNA MER1_type 1 225 0 2 1078 672 243 29 0 chr6 64642476 64642616 -84874421 - B1_Mur1 SINE Alu -1 148 5 2 1078 504 0 0 0 chr6 64643240 64643296 -84873741 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 2 1078 468 0 0 0 chr6 64643533 64643585 -84873452 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 2 1078 21 57 0 0 chr6 64644019 64644054 -84872983 + AT_rich Low_complexity Low_complexity 1 35 0 2 1078 180 0 0 0 chr6 64645167 64645187 -84871850 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1078 270 136 0 0 chr6 64645187 64645231 -84871806 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1078 200 288 14 0 chr6 64646041 64646114 -84870923 + T-rich Low_complexity Low_complexity 3 76 0 2 1078 270 0 0 0 chr6 64646426 64646456 -84870581 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 1078 25 0 0 0 chr6 64646500 64646525 -84870512 + AT_rich Low_complexity Low_complexity 1 25 0 2 1078 227 322 115 53 chr6 64647470 64647696 -84869341 + MIRb SINE MIR 26 265 -3 2 1078 268 267 27 0 chr6 64648847 64648922 -84868115 + ID4_ SINE ID 7 83 0 2 1078 1501 210 131 14 chr6 64649561 64649935 -84867102 - MTD LTR MaLR -23 396 1 2 1078 193 321 74 0 chr6 64651458 64651539 -84865498 - L2c LINE L2 -38 3349 3263 2 1078 323 292 126 27 chr6 64651837 64652020 -84865017 + MIRc SINE MIR 33 233 -35 2 1078 363 202 0 0 chr6 64652692 64652801 -84864236 + (CA)n Simple_repeat Simple_repeat 2 110 0 2 1078 390 85 0 0 chr6 64653002 64653061 -84863976 + (CACAT)n Simple_repeat Simple_repeat 1 59 0 2 1078 29 28 0 0 chr6 64653091 64653127 -84863910 + AT_rich Low_complexity Low_complexity 1 36 0 2 1078 188 32 97 0 chr6 64654190 64654221 -84862816 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1078 1132 279 47 11 chr6 64656084 64656443 -84860594 + MTEa LTR MaLR 1 372 -7 2 1078 198 77 75 19 chr6 64656452 64656505 -84860532 + T-rich Low_complexity Low_complexity 2 57 0 2 1078 340 198 10 90 chr6 64657376 64657476 -84859561 - PB1D10 SINE Alu -1 116 25 2 1078 450 0 0 0 chr6 64657500 64657550 -84859487 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 2 1078 714 157 0 0 chr6 64657785 64657963 -84859074 + CT-rich Low_complexity Low_complexity 1 178 0 2 1078 523 138 0 0 chr6 64657963 64658050 -84858987 + ORR1C1 LTR MaLR 166 252 -126 2 1078 313 280 90 0 chr6 64658104 64658204 -84858833 + ID_B1 SINE B4 115 223 -1 2 1078 1408 298 163 36 chr6 64658217 64659212 -84857825 + Lx8 LINE L1 6337 7457 -16 2 1078 451 272 10 0 chr6 64660623 64660726 -84856311 - PB1D10 SINE Alu -12 105 2 2 1078 288 379 60 36 chr6 64660956 64661123 -84855914 + MLT1D LTR MaLR 24 194 -311 2 1078 531 0 0 0 chr6 64661126 64661185 -84855852 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1078 1725 200 29 75 chr6 64661308 64661360 -84855677 - RMER6D LTR ERVK -5 715 680 2 1078 1151 82 0 0 chr6 64661360 64661507 -84855530 + B1_Mus1 SINE Alu 2 148 0 2 1078 1725 200 29 75 chr6 64661507 64661832 -84855205 - RMER6D LTR ERVK -41 679 363 2 1078 198 0 0 0 chr6 64661832 64661854 -84855183 + (CCA)n Simple_repeat Simple_repeat 2 23 0 2 1078 1725 208 44 43 chr6 64661854 64662251 -84854786 - RMER6D LTR ERVK -260 460 56 2 1078 468 0 0 0 chr6 64662254 64662306 -84854731 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1078 362 295 15 23 chr6 64662319 64662365 -84854672 - MT2B LTR ERVL -402 131 86 2 1078 200 35 35 0 chr6 64662365 64662394 -84854643 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 1078 404 204 13 2 chr6 64662394 64662479 -84854558 - MT2B LTR ERVL -448 85 1 2 1078 1723 216 6 3 chr6 64662552 64662905 -84854132 + MTC LTR MaLR 7 360 -61 2 1078 498 33 0 0 chr6 64662914 64662974 -84854063 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 2 1078 831 181 0 0 chr6 64662974 64663134 -84853903 + GA-rich Low_complexity Low_complexity 1 160 0 2 1078 479 325 6 29 chr6 64663134 64663305 -84853732 + MLT1D LTR MaLR 315 481 -24 2 1078 441 311 85 10 chr6 64663331 64663574 -84853463 + MLT2C2 LTR ERVL 33 292 -172 2 1078 289 333 52 9 chr6 64663625 64663740 -84853297 + Tigger7 DNA MER2_type 3 122 -2369 2 1078 475 268 67 29 chr6 64663748 64663938 -84853099 + B3A SINE B2 1 197 -1 2 1078 352 352 143 43 chr6 64663919 64664177 -84852860 + Tigger7 DNA MER2_type 95 378 -2113 2 1078 304 222 0 0 chr6 64664224 64664278 -84852759 + B1_Mur4 SINE Alu 1 54 -96 2 1078 225 0 0 0 chr6 64664562 64664587 -84852450 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1078 416 194 85 40 chr6 64664587 64664764 -84852273 + Lx9 LINE L1 7458 7642 -2 2 1078 3848 252 41 51 chr6 64664775 64665874 -84851163 + Lx7 LINE L1 6025 7112 -584 2 1078 310 304 55 60 chr6 64666323 64666540 -84850497 + ERVL-B4-int LTR ERVL 2644 2859 -2855 2 1078 224 267 172 16 chr6 64667806 64667928 -84849109 - L2b LINE L2 -262 3113 2973 2 1078 1532 49 0 0 chr6 64667949 64668133 -84848904 - L1_Mus2 LINE L1 -411 6155 5972 2 1078 3119 70 0 67 chr6 64668133 64668565 -84848472 + L1_Mus2 LINE L1 6161 6563 -3 2 1078 240 347 123 43 chr6 64668565 64668914 -84848123 - L1MC4 LINE L1 -214 7828 7452 2 1078 315 326 55 17 chr6 64669082 64669263 -84847774 - L1MC4 LINE L1 -961 7081 6894 2 1078 576 195 0 0 chr6 64669263 64669417 -84847620 + (TG)n Simple_repeat Simple_repeat 1 154 0 2 1078 1242 184 196 0 chr6 64669572 64669843 -84847194 + L1Md_Gf LINE L1 309 632 -5987 2 1078 36255 41 3 3 chr6 64669841 64674542 -84842495 + L1Md_Gf LINE L1 792 5619 -2379 2 1078 8293 57 0 9 chr6 64674542 64675534 -84841503 + L1Md_T LINE L1 5588 6570 -12 2 1078 6722 58 1 1 chr6 64675530 64676330 -84840707 + L1Md_F2 LINE L1 5783 6582 0 2 1078 1292 256 9 64 chr6 64676330 64676424 -84840613 + L1Md_Gf LINE L1 5620 5689 -2309 2 1078 204 40 0 0 chr6 64678888 64678913 -84838124 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1078 342 0 0 0 chr6 64681542 64681580 -84835457 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1078 218 277 146 32 chr6 64682173 64682296 -84834741 + L3 LINE CR1 4270 4406 -83 2 1078 597 94 0 0 chr6 64683231 64683316 -84833721 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 1078 1591 49 5 0 chr6 64685959 64686143 -84830894 - B2_Mm1a SINE B2 -8 185 1 2 1078 1597 255 89 16 chr6 64687254 64687801 -84829236 + Lx9 LINE L1 6882 7611 -33 2 1078 21 0 0 0 chr6 64687823 64687844 -84829193 + AT_rich Low_complexity Low_complexity 1 21 0 2 1078 5313 52 2 10 chr6 64687958 64688586 -84828451 + L1Md_F2 LINE L1 5960 6582 0 2 1078 225 65 0 0 chr6 64689458 64689489 -84827548 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 2 1078 927 0 0 0 chr6 64690377 64690480 -84826557 + (TCTCC)n Simple_repeat Simple_repeat 2 104 0 2 1078 280 217 0 98 chr6 64690588 64690649 -84826388 - PB1D10 SINE Alu -53 64 10 2 1078 781 174 14 7 chr6 64690927 64691072 -84825965 + URR1A DNA MER1_type 81 226 0 2 1078 413 225 52 43 chr6 64692527 64692643 -84824394 + PB1D10 SINE Alu 1 117 0 2 1078 527 260 304 18 chr6 64693627 64693854 -84823183 - B4 SINE B4 0 292 1 2 1078 294 315 0 0 chr6 64694100 64694173 -84822864 + ID4_ SINE ID 1 73 -10 2 1078 215 222 0 0 chr6 64694173 64694218 -84822819 + (CAAT)n Simple_repeat Simple_repeat 2 46 0 2 1078 275 325 39 23 chr6 64694254 64694383 -84822654 + MIRc SINE MIR 69 199 -69 2 1078 4728 103 19 52 chr6 64694481 64695115 -84821922 + L1VL4 LINE L1 194 812 -5490 2 1078 1078 59 0 94 chr6 64695115 64695264 -84821773 + B1_Mus2 SINE Alu 1 135 -12 2 1078 4728 103 19 52 chr6 64695264 64695376 -84821661 + L1VL4 LINE L1 813 915 -5387 2 1078 7942 76 40 3 chr6 64695373 64696506 -84820531 + MusHAL1 LINE L1 1538 2712 0 2 1078 441 0 0 0 chr6 64696704 64696753 -84820284 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1078 964 124 0 17 chr6 64696753 64696933 -84820104 + (GAA)n Simple_repeat Simple_repeat 3 179 0 2 1078 501 17 0 0 chr6 64697745 64697803 -84819234 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1078 444 248 48 41 chr6 64697951 64698098 -84818939 - B1F1 SINE Alu -1 148 1 2 1078 283 253 37 25 chr6 64698189 64698270 -84818767 - ID4_ SINE ID 0 83 2 2 1078 273 327 84 0 chr6 64698719 64698826 -84818211 - PB1D10 SINE Alu 0 117 2 2 1078 225 254 0 0 chr6 64699111 64699174 -84817863 + L1M2 LINE L1 3168 3230 -2650 2 1078 362 301 0 14 chr6 64699174 64699322 -84817715 + GA-rich Low_complexity Low_complexity 2 147 0 2 1078 303 28 0 0 chr6 64699323 64699359 -84817678 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1078 1426 282 55 80 chr6 64699369 64699750 -84817287 + L1M2 LINE L1 3277 3685 -2458 2 1078 234 0 0 0 chr6 64699750 64699776 -84817261 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1078 1426 282 55 80 chr6 64699776 64699835 -84817202 + L1M2 LINE L1 3686 3743 -2400 2 1078 578 231 181 23 chr6 64699835 64700012 -84817025 - B3 SINE B2 -11 205 1 2 1078 1426 282 55 80 chr6 64700012 64700241 -84816796 + L1M2 LINE L1 3744 3947 -2196 2 1078 4876 28 0 0 chr6 64700241 64700771 -84816266 - L1Md_T LINE L1 -2 6580 6051 2 1078 1426 282 55 80 chr6 64700771 64700933 -84816104 + L1M2 LINE L1 3948 4088 -2055 2 1078 1159 241 92 30 chr6 64700952 64701256 -84815781 + ORR1D1 LTR MaLR 44 366 -8 2 1078 252 267 18 37 chr6 64701549 64701658 -84815379 + L1M2 LINE L1 4447 4553 -1327 2 1078 276 247 0 45 chr6 64701807 64701896 -84815141 - RMER1B Other Other 0 1066 982 2 1078 338 264 4 4 chr6 64701898 64702026 -84815011 - Lx7 LINE L1 -289 7184 7045 2 1078 248 277 0 84 chr6 64702019 64702090 -84814947 - Lx8 LINE L1 -582 6891 6827 2 1078 2287 266 103 13 chr6 64702227 64703059 -84813978 - Lx7 LINE L1 -1787 5909 4971 2 1078 242 227 13 13 chr6 64703077 64703153 -84813884 - Lx7 LINE L1 -6762 966 891 2 1078 300 268 178 11 chr6 64703723 64703908 -84813129 + L1M2 LINE L1 4547 4762 -1381 2 1078 790 328 35 15 chr6 64703994 64704254 -84812783 + B4A SINE B4 5 269 -23 2 1078 418 233 78 26 chr6 64704271 64704443 -84812594 + L1M2 LINE L1 4809 5003 -1140 2 1078 852 162 144 0 chr6 64704960 64705127 -84811910 + URR1A DNA MER1_type 1 191 -35 2 1078 1203 106 4 4 chr6 64707158 64707396 -84809641 + (GAA)n Simple_repeat Simple_repeat 1 238 0 2 1078 293 193 0 66 chr6 64707572 64707633 -84809404 - B1F SINE Alu 0 149 93 3 1078 4024 166 27 16 chr6 64707642 64708344 -84808693 + Lx LINE L1 5945 6654 0 3 1078 7642 63 14 3 chr6 64708915 64710306 -84806731 - L1Md_F2 LINE L1 -11 6571 5156 3 1078 6572 76 0 3 chr6 64710304 64711161 -84805876 + L1Md_F2 LINE L1 4287 5140 -743 3 1078 310 273 75 48 chr6 64711465 64711611 -84805426 + RSINE1 SINE B4 2 151 -14 3 1078 486 0 0 0 chr6 64711614 64711668 -84805369 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1078 310 115 16 16 chr6 64711874 64711936 -84805101 + (TCC)n Simple_repeat Simple_repeat 2 63 0 3 1078 21 0 0 0 chr6 64712784 64712805 -84804232 + GC_rich Low_complexity Low_complexity 1 21 0 3 1078 247 349 0 0 chr6 64712978 64713061 -84803976 - Tigger5 DNA MER2_type -28 2378 2296 3 1078 517 260 10 0 chr6 64714867 64714963 -84802074 - B1F SINE Alu -52 97 1 3 1078 243 293 0 0 chr6 64715427 64715485 -84801552 - Lx8 LINE L1 -132 7341 7284 3 1078 2051 279 31 9 chr6 64715547 64716097 -84800940 - Lx8 LINE L1 -300 7173 6612 3 1078 435 341 8 0 chr6 64716100 64716223 -84800814 - RMER15-int LTR ERVL -413 4586 4463 3 1078 1531 44 0 0 chr6 64716223 64716405 -84800632 + L1Md_A LINE L1 6401 6582 0 3 1078 605 319 41 53 chr6 64716553 64716967 -84800070 - L1_Mur3 LINE L1 -1044 5099 4662 3 1078 7315 74 2 0 chr6 64717005 64717934 -84799103 - L1_Mus3 LINE L1 -1 6637 5707 3 1078 417 58 0 0 chr6 64717931 64717983 -84799054 + L1_Mur1 LINE L1 5514 5565 -321 3 1078 1766 302 51 24 chr6 64717996 64718784 -84798253 - L1_Mur3 LINE L1 -1274 4606 3798 3 1078 259 365 21 47 chr6 64718872 64719062 -84797975 - L3 LINE CR1 -577 3912 3728 3 1078 514 239 18 0 chr6 64719068 64719177 -84797860 - PB1D10 SINE Alu 0 117 7 3 1078 262 319 56 28 chr6 64719094 64719234 -84797803 - B4A SINE B4 -109 183 37 3 1078 246 225 96 27 chr6 64719249 64719322 -84797715 + Tigger2b DNA MER2_type 64 141 -585 3 1078 2565 223 102 7 chr6 64719313 64719913 -84797124 - Lx6 LINE L1 -168 7528 6607 3 1078 897 189 83 10 chr6 64719918 64720110 -84796927 + Lx6 LINE L1 7252 7457 -3 3 1078 1123 320 107 14 chr6 64720090 64720644 -84796393 + Tigger2b DNA MER2_type 121 725 -1 3 1078 217 196 0 73 chr6 64720920 64720975 -84796062 + PB1D7 SINE Alu 67 117 -3 3 1078 549 72 0 0 chr6 64721035 64721118 -84795919 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 1078 244 184 77 26 chr6 64721135 64721252 -84795785 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 3 1078 210 169 46 0 chr6 64721268 64721333 -84795704 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 3 1078 34 24 0 0 chr6 64722195 64722236 -84794801 + AT_rich Low_complexity Low_complexity 1 41 0 3 1078 224 324 39 19 chr6 64722599 64722703 -84794334 + L4 LINE RTE 1629 1734 -295 3 1078 797 303 66 100 chr6 64724648 64724734 -84792303 - B4 SINE B4 0 292 213 3 1078 3669 68 11 4 chr6 64724734 64725238 -84791799 + L1Md_F2 LINE L1 6086 6582 0 3 1078 797 303 66 100 chr6 64725238 64725449 -84791588 - B4 SINE B4 -80 212 2 3 1078 543 148 0 0 chr6 64725829 64725910 -84791127 + B3 SINE B2 1 81 -135 3 1078 643 24 12 12 chr6 64725910 64725996 -84791041 + (TCTA)n Simple_repeat Simple_repeat 2 87 0 3 1078 803 244 33 9 chr6 64726778 64726989 -84790048 + B3 SINE B2 1 216 0 3 1078 379 346 89 48 chr6 64727110 64727380 -84789657 + B4 SINE B4 1 281 -11 3 1078 218 179 0 18 chr6 64727421 64727478 -84789559 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1078 1801 271 30 11 chr6 64727787 64728254 -84788783 - MTE-int LTR MaLR -1104 476 1 3 1078 10441 60 4 7 chr6 64728364 64729701 -84787336 - L1Md_F2 LINE L1 -6 6576 5235 3 1078 351 0 0 0 chr6 64729701 64729740 -84787297 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1078 10441 72 8 2 chr6 64729740 64730563 -84786474 - L1Md_F2 LINE L1 -649 5234 4414 3 1078 1120 266 59 11 chr6 64730576 64731017 -84786020 + Ricksha DNA MuDR 1328 1789 -1457 3 1078 343 324 121 59 chr6 64731051 64731340 -84785697 - RMER10A LTR ERVL -14 428 122 3 1078 397 260 302 36 chr6 64731427 64731732 -84785305 + Ricksha DNA MuDR 1890 2275 -971 3 1078 553 292 52 46 chr6 64732039 64732233 -84784804 - B3A SINE B2 0 198 4 3 1078 1508 275 22 17 chr6 64732233 64732580 -84784457 - MTEa LTR MaLR -30 349 1 3 1078 478 293 51 43 chr6 64732593 64732828 -84784209 + Ricksha DNA MuDR 2716 2952 -294 3 1078 320 254 167 0 chr6 64732948 64733062 -84783975 - MT2A LTR ERVL -117 416 284 3 1078 4197 69 49 0 chr6 64733195 64733748 -84783289 + L1_Mus4 LINE L1 6053 6632 -4 3 1078 194 109 0 42 chr6 64733751 64733799 -84783238 + A-rich Low_complexity Low_complexity 3 48 0 3 1078 370 271 25 27 chr6 64733815 64733931 -84783106 - MTEa LTR MaLR -252 127 1 3 1078 1760 273 87 64 chr6 64733952 64734838 -84782199 - MERVL_2A-int LTR ERVL -26 5735 4830 3 1078 438 271 24 39 chr6 64734840 64734967 -84782070 + MTEb LTR MaLR 1 125 -254 3 1078 418 324 37 31 chr6 64734967 64735031 -84782006 + MT2A LTR ERVL 1 192 -341 3 1078 693 271 46 35 chr6 64735039 64735274 -84781763 + MTD LTR MaLR 1 221 -186 3 1078 268 219 116 47 chr6 64735286 64735372 -84781665 + MTD LTR MaLR 272 363 -16 3 1078 310 387 28 34 chr6 64735384 64735563 -84781474 + MT2A LTR ERVL 193 370 -163 3 1078 243 291 145 0 chr6 64735572 64735689 -84781348 + MLT2B1 LTR ERVL 434 567 0 3 1078 624 282 30 5 chr6 64735834 64736037 -84781000 - MERVL_2A-int LTR ERVL -1366 4395 4188 3 1078 849 248 50 5 chr6 64736045 64736264 -84780773 + Lx7 LINE L1 6697 6925 -771 3 1078 1190 256 87 50 chr6 64736387 64736848 -84780189 + Lx7 LINE L1 6930 7407 -289 3 1078 7652 111 26 23 chr6 64737046 64737063 -84779974 - Lx3A LINE L1 0 6981 6968 3 1078 243 88 0 0 chr6 64737063 64737097 -84779940 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1078 7652 111 26 23 chr6 64737097 64738359 -84778678 - Lx3A LINE L1 -14 6967 5699 3 1078 30440 59 3 1 chr6 64738388 64743157 -84773880 + L1Md_A LINE L1 422 5159 -724 3 1078 210 222 0 0 chr6 64743157 64743211 -84773826 + CT-rich Low_complexity Low_complexity 3 56 0 3 1078 1190 232 69 10 chr6 64743296 64743601 -84773436 - Lx7 LINE L1 -350 7346 7024 3 1078 189 214 0 0 chr6 64743799 64743841 -84773196 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1078 419 282 0 0 chr6 64744065 64744150 -84772887 - RSINE1 SINE B4 -32 133 49 3 1078 933 247 90 45 chr6 64744605 64744915 -84772122 - ORR1D2 LTR MaLR -4 366 43 3 1078 227 114 23 0 chr6 64745012 64745056 -84771981 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1078 723 37 9 0 chr6 64745129 64745285 -84771752 + L1Md_F3 LINE L1 6475 6584 0 3 1078 632 64 0 11 chr6 64745732 64745827 -84771210 - Lx LINE L1 -6 6648 6555 3 1078 1244 116 19 37 chr6 64745829 64746044 -84770993 + Lx LINE L1 6328 6538 -116 3 1078 26 0 0 0 chr6 64747083 64747109 -84769928 + AT_rich Low_complexity Low_complexity 1 26 0 3 1078 186 43 0 0 chr6 64747290 64747313 -84769724 + (CATA)n Simple_repeat Simple_repeat 2 24 0 3 1078 24 53 0 0 chr6 64748227 64748265 -84768772 + AT_rich Low_complexity Low_complexity 1 38 0 3 1078 243 290 58 35 chr6 64748391 64748556 -84768481 + MIR SINE MIR 45 218 -50 3 1078 230 327 62 0 chr6 64748556 64748669 -84768368 + PB1D7 SINE Alu 1 120 0 3 1079 212 311 55 28 chr6 64751015 64751124 -84765913 + MIRb SINE MIR 89 200 -68 3 1079 1583 261 40 70 chr6 64751360 64752108 -84764929 + Lx9 LINE L1 6124 6849 -795 3 1079 2395 247 95 3 chr6 64752104 64752790 -84764247 + Lx7 LINE L1 6560 7308 -388 3 1079 186 43 0 0 chr6 64752804 64752827 -84764210 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1079 233 215 12 37 chr6 64752834 64752916 -84764121 + T-rich Low_complexity Low_complexity 2 81 0 3 1079 369 138 0 0 chr6 64752954 64753012 -84764025 - Lx2 LINE L1 -165 6832 6775 3 1079 5217 118 36 6 chr6 64753010 64753866 -84763171 - Lx2 LINE L1 -352 6645 5764 3 1079 4085 154 9 49 chr6 64753864 64754211 -84762826 + Lx2 LINE L1 5116 5462 -421 3 1079 1098 109 0 0 chr6 64754211 64754358 -84762679 + B1_Mus2 SINE Alu 1 147 0 3 1079 8310 126 36 10 chr6 64754358 64755884 -84761153 + Lx2 LINE L1 5463 6996 -1 3 1079 269 229 114 0 chr6 64756206 64756276 -84760761 - L2a LINE L2 0 3426 3349 3 1079 32356 47 13 16 chr6 64756311 64760970 -84756067 + L1Md_Gf LINE L1 126 4915 -971 3 1079 234 206 44 73 chr6 64760970 64761038 -84755999 - RMER20A LTR ERVK -265 251 186 3 1079 32356 47 13 16 chr6 64761038 64761692 -84755345 + L1Md_Gf LINE L1 4916 5589 -297 3 1079 8267 32 13 1 chr6 64761692 64762676 -84754361 + L1Md_T LINE L1 5587 6582 0 3 1079 504 311 26 19 chr6 64763106 64763250 -84753787 + RSINE1 SINE B4 2 147 -18 3 1079 189 0 0 0 chr6 64763250 64763271 -84753766 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1079 192 403 38 83 chr6 64763287 64763469 -84753568 - L2 LINE L2 -476 2943 2758 3 1079 261 0 0 0 chr6 64763469 64763498 -84753539 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1079 192 403 38 83 chr6 64763498 64763786 -84753251 - L2 LINE L2 -662 2757 2495 3 1079 216 0 0 0 chr6 64764789 64764813 -84752224 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 3 1079 2023 201 19 31 chr6 64766752 64767174 -84749863 + MTC LTR MaLR 1 417 -4 3 1079 22 0 0 0 chr6 64767196 64767218 -84749819 + AT_rich Low_complexity Low_complexity 1 22 0 3 1079 2997 48 8 3 chr6 64767260 64767638 -84749399 + L1Md_F2 LINE L1 6202 6581 -1 3 1079 702 191 249 0 chr6 64767702 64767875 -84749162 - B3 SINE B2 0 216 1 3 1079 229 342 88 7 chr6 64769048 64769195 -84747842 + RMER15 LTR ERVL 403 561 -14 3 1079 458 311 94 22 chr6 64770953 64771134 -84745903 + MER20 DNA MER1_type 1 194 -25 3 1079 235 274 82 0 chr6 64771393 64771466 -84745571 + B1F SINE Alu 68 146 -3 3 1079 304 264 0 89 chr6 64771474 64771553 -84745484 + ID4_ SINE ID 2 73 -10 3 1079 625 204 71 21 chr6 64772288 64772428 -84744609 + B1_Mus2 SINE Alu 1 147 0 3 1079 189 0 0 0 chr6 64773676 64773697 -84743340 + (CAGC)n Simple_repeat Simple_repeat 4 24 0 3 1079 261 329 60 36 chr6 64774122 64774289 -84742748 - MIR SINE MIR -78 184 14 3 1079 2741 237 46 9 chr6 64774641 64775297 -84741740 + Lx7 LINE L1 6434 7113 -583 3 1079 1874 149 95 73 chr6 64775313 64775439 -84741598 - MTC LTR MaLR 0 421 320 3 1079 4479 167 55 1 chr6 64775439 64776223 -84740814 - Lx5 LINE L1 -3 7047 6222 3 1079 1874 149 95 73 chr6 64776223 64776508 -84740529 - MTC LTR MaLR -102 319 1 3 1079 689 227 48 11 chr6 64776510 64776697 -84740340 + Lx7 LINE L1 7126 7319 -377 3 1079 405 86 0 0 chr6 64776739 64776797 -84740240 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1079 250 259 52 35 chr6 64776867 64776983 -84740054 + Lx7 LINE L1 7563 7680 -16 3 1079 242 354 26 17 chr6 64777143 64777258 -84739779 + PB1D9 SINE Alu 3 118 -2 3 1079 3713 97 2 0 chr6 64777258 64777896 -84739141 - L1_Mus4 LINE L1 -555 6081 5442 3 1079 3947 104 6 0 chr6 64777910 64778437 -84738600 + Lx LINE L1 6109 6638 -16 4 1079 24 32 0 0 chr6 64778437 64778468 -84738569 + AT_rich Low_complexity Low_complexity 1 31 0 4 1079 2689 35 10 3 chr6 64778638 64778950 -84738087 - L1Md_F3 LINE L1 -1 6583 6270 4 1079 893 324 54 30 chr6 64779106 64779490 -84737547 - Lx8 LINE L1 -123 7350 6955 4 1079 5026 173 44 42 chr6 64779490 64780390 -84736647 - RMER19B LTR ERVK 0 902 1 4 1079 893 319 165 8 chr6 64780390 64780714 -84736323 - Lx8 LINE L1 -519 6954 6583 4 1079 540 126 0 0 chr6 64780819 64780906 -84736131 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 1079 1160 300 109 139 chr6 64780922 64781163 -84735874 - MTE-int LTR MaLR -654 926 712 4 1079 1448 82 33 0 chr6 64781163 64781347 -84735690 - B2_Mm2 SINE B2 -5 190 1 4 1079 1160 300 109 139 chr6 64781347 64781397 -84735640 - MTE-int LTR MaLR -869 711 711 4 1079 804 175 13 59 chr6 64781397 64781549 -84735488 - B1_Mus2 SINE Alu 0 147 3 4 1079 1160 300 109 139 chr6 64781549 64781567 -84735470 - MTE-int LTR MaLR -869 711 696 4 1079 6696 59 1 2 chr6 64781567 64782362 -84734675 - L1Md_F2 LINE L1 0 6582 5789 4 1079 1160 300 109 139 chr6 64782362 64782679 -84734358 - MTE-int LTR MaLR -885 695 358 4 1079 279 0 0 0 chr6 64782679 64782710 -84734327 + (TAA)n Simple_repeat Simple_repeat 1 31 0 4 1079 1160 300 109 139 chr6 64782710 64782943 -84734094 - MTE-int LTR MaLR -1223 357 91 4 1079 866 223 130 23 chr6 64782946 64783162 -84733875 - RLTR42 LTR ERVK 0 239 1 4 1079 4066 183 64 6 chr6 64783162 64783961 -84733076 - RLTR42-int LTR ERVK 0 5522 4678 4 1079 6417 176 33 27 chr6 64783962 64785171 -84731866 - RLTR42-int LTR ERVK -2276 3246 2031 4 1079 7646 104 11 0 chr6 64785171 64786763 -84730274 + L1_Mus3 LINE L1 5027 6632 -6 4 1079 5076 78 6 12 chr6 64786748 64787510 -84729527 + Lx3_Mus LINE L1 5213 5969 -1012 4 1079 5388 96 24 13 chr6 64787514 64788264 -84728773 + Lx3_Mus LINE L1 6252 7009 0 4 1079 511 111 0 0 chr6 64788702 64788774 -84728263 - B1_Mus2 SINE Alu -2 145 74 4 1079 265 286 49 39 chr6 64788774 64788804 -84728233 - ID_B1 SINE B4 -2 222 120 4 1079 324 0 0 0 chr6 64788807 64788843 -84728194 + (TTGG)n Simple_repeat Simple_repeat 2 37 0 4 1079 282 116 0 0 chr6 64788867 64788910 -84728127 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1079 13239 40 32 19 chr6 64789043 64790667 -84726370 + RLTR1B-int LTR ERV1 1655 3299 0 4 1079 2334 44 209 3 chr6 64790667 64791007 -84726030 + RLTR1B LTR ERV1 1 410 -102 4 1079 438 202 0 82 chr6 64791014 64791111 -84725926 + RLTR1B LTR ERV1 348 436 -76 4 1079 274 308 0 0 chr6 64792036 64792101 -84724936 - ID4_ SINE ID -17 66 2 4 1079 635 328 60 11 chr6 64792483 64792518 -84724519 - B3 SINE B2 -22 194 150 4 1079 383 55 0 18 chr6 64792518 64792573 -84724464 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1079 635 328 60 11 chr6 64792573 64792722 -84724315 - B3 SINE B2 -67 149 1 4 1079 1074 102 0 17 chr6 64793100 64793279 -84723758 + (TCC)n Simple_repeat Simple_repeat 3 178 0 4 1079 733 89 14 36 chr6 64793279 64793307 -84723730 + (TTCTCC)n Simple_repeat Simple_repeat 4 33 0 4 1079 1062 112 0 17 chr6 64793307 64793488 -84723549 + (TCC)n Simple_repeat Simple_repeat 3 180 0 4 1079 733 89 14 36 chr6 64793488 64793599 -84723438 + (TTCTCC)n Simple_repeat Simple_repeat 5 111 0 4 1079 1417 28 11 0 chr6 64793599 64793777 -84723260 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1079 422 178 148 0 chr6 64793797 64793898 -84723139 - RLTR25A LTR ERVK -86 1017 902 4 1079 780 214 20 7 chr6 64796198 64796344 -84720693 - B1_Mur1 SINE Alu 0 149 2 4 1079 303 318 180 51 chr6 64796396 64796651 -84720386 - B4 SINE B4 0 292 5 4 1079 2494 146 7 86 chr6 64796652 64797080 -84719957 - ORR1B1 LTR MaLR 0 394 1 4 1079 1805 234 81 39 chr6 64797330 64797900 -84719137 + RMER6C LTR ERVK 96 689 -1 4 1079 775 218 0 40 chr6 64797940 64798088 -84718949 - B1_Mus2 SINE Alu -5 142 1 4 1079 214 103 51 0 chr6 64798787 64798826 -84718211 + CT-rich Low_complexity Low_complexity 2 42 0 4 1079 183 139 0 0 chr6 64798977 64799013 -84718024 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1079 2031 295 31 26 chr6 64799630 64800316 -84716721 + Lx9 LINE L1 6705 7393 -251 4 1079 3286 211 39 10 chr6 64800315 64801054 -84715983 - Lx9 LINE L1 -413 7231 6288 4 1079 6216 86 27 0 chr6 64801064 64802466 -84714571 + L1_Mus1 LINE L1 4956 6382 -185 4 1079 284 25 0 0 chr6 64802468 64802508 -84714529 + L1_Mus1 LINE L1 6525 6564 -3 4 1079 6990 96 13 7 chr6 64802630 64803632 -84713405 - L1Md_F2 LINE L1 -15 6567 5595 4 1079 450 0 0 0 chr6 64803636 64803686 -84713351 + (TCC)n Simple_repeat Simple_repeat 2 51 0 4 1079 1967 237 122 25 chr6 64803686 64804460 -84712577 - Lx9 LINE L1 -1444 6200 5336 4 1079 654 106 0 0 chr6 64804473 64804567 -84712470 - L1_Mus2 LINE L1 -1 6565 6472 4 1079 3055 184 20 19 chr6 64804569 64805338 -84711699 - Lx9 LINE L1 -699 5601 4472 4 1079 1378 208 172 3 chr6 64805343 64805714 -84711323 - L1_Mur3 LINE L1 -493 5387 4954 4 1079 4161 214 53 151 chr6 64805712 64807374 -84709663 - L1_Mur3 LINE L1 -3253 2627 1147 4 1079 1668 32 0 21 chr6 64807374 64807564 -84709473 + B2_Mm1a SINE B2 2 187 -6 4 1079 4161 165 41 52 chr6 64807564 64808196 -84708841 - L1_Mur3 LINE L1 -6582 1146 522 4 1079 834 212 136 5 chr6 64808195 64808408 -84708629 + Lx7 LINE L1 7448 7688 -8 4 1079 1139 203 14 92 chr6 64808404 64808697 -84708340 - RMER1B Other Other -3 1063 794 4 1079 514 294 6 16 chr6 64808686 64808894 -84708143 - RMER1A Other Other -830 200 14 4 1079 369 255 9 54 chr6 64808897 64809009 -84708028 + B1_Mur4 SINE Alu 44 150 0 4 1079 2681 99 142 0 chr6 64809144 64809560 -84707477 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1079 357 82 0 0 chr6 64809704 64809753 -84707284 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 4 1079 653 154 25 8 chr6 64809753 64809871 -84707166 - Lx3A LINE L1 -14 6967 6848 4 1079 4835 96 9 0 chr6 64809871 64810529 -84706508 + Lx3_Mus LINE L1 6197 6860 -149 4 1079 298 340 40 0 chr6 64811797 64811897 -84705140 - PB1D10 SINE Alu -10 107 4 4 1079 213 360 38 48 chr6 64811806 64811911 -84705126 - ID_B1 SINE B4 -45 179 76 4 1079 387 60 0 0 chr6 64812205 64812255 -84704782 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1079 464 205 0 0 chr6 64812792 64812870 -84704167 - PB1D10 SINE Alu -7 110 33 4 1079 239 253 109 11 chr6 64813712 64813804 -84703233 - MIRb SINE MIR -95 173 73 4 1079 608 185 50 29 chr6 64814007 64814146 -84702891 - B1F1 SINE Alu 0 149 8 4 1079 203 258 16 16 chr6 64814434 64814497 -84702540 + CT-rich Low_complexity Low_complexity 5 67 0 4 1079 660 26 0 0 chr6 64815897 64815975 -84701062 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1079 332 324 92 44 chr6 64816700 64817047 -84699990 - MTEa LTR MaLR -13 366 1 4 1079 287 301 118 46 chr6 64817331 64817484 -84699553 - MIR3 SINE MIR -8 200 37 4 1079 21 71 0 0 chr6 64817561 64817603 -84699434 + AT_rich Low_complexity Low_complexity 1 42 0 4 1079 346 202 140 75 chr6 64818653 64818760 -84698277 + PB1D10 SINE Alu 4 117 0 4 1079 326 336 36 0 chr6 64819200 64819310 -84697727 + MLT1A1 LTR MaLR 52 165 -243 4 1079 281 0 0 0 chr6 64819864 64819897 -84697140 + MT2C_Mm LTR ERVL 1 33 -442 4 1079 3534 56 0 4 chr6 64819902 64820366 -84696671 + ORR1A3-int LTR MaLR 1 462 -636 4 1079 1754 120 163 6 chr6 64820366 64820685 -84696352 + MERVL_2A-int LTR ERVL 5261 5629 -132 4 1079 315 167 26 53 chr6 64820685 64820761 -84696276 + ORR1A3-int LTR MaLR 567 640 -1323 4 1079 292 0 0 0 chr6 64820761 64820795 -84696242 + MERVL-int LTR ERVL 5448 5481 -4 4 1079 275 0 0 0 chr6 64820797 64820829 -84696208 + MT2C_Mm LTR ERVL 2 33 -442 4 1079 1951 158 3 19 chr6 64822197 64822520 -84694517 + ORR1A3 LTR MaLR 1 318 -8 4 1079 1077 90 0 0 chr6 64822800 64822977 -84694060 + (TCC)n Simple_repeat Simple_repeat 3 179 0 4 1079 867 178 0 0 chr6 64822978 64823152 -84693885 + CT-rich Low_complexity Low_complexity 2 175 0 4 1079 508 310 148 0 chr6 64823213 64823368 -84693669 - ID_B1 SINE B4 -2 222 45 4 1079 2465 178 73 14 chr6 64824206 64824702 -84692335 + Lx9 LINE L1 6952 7476 -168 4 1079 342 0 0 0 chr6 64824702 64824740 -84692297 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1079 448 217 8 48 chr6 64824742 64824868 -84692169 + Lx9 LINE L1 7517 7637 -7 4 1079 21 0 0 0 chr6 64824874 64824895 -84692142 + AT_rich Low_complexity Low_complexity 1 21 0 4 1079 2040 196 50 2 chr6 64825847 64826245 -84690792 + MTC LTR MaLR 5 421 0 4 1079 396 235 70 23 chr6 64826540 64826684 -84690353 + MLT1A1 LTR MaLR 200 388 -20 4 1079 1041 58 71 14 chr6 64826911 64827051 -84689986 + B1_Mus1 SINE Alu 1 148 0 4 1079 2273 76 0 0 chr6 64827394 64827671 -84689366 - L1_Mus2 LINE L1 0 6566 6290 4 1079 1868 194 80 3 chr6 64828080 64828431 -84688606 - ORR1C1 LTR MaLR 0 378 1 4 1079 477 0 0 0 chr6 64829681 64829734 -84687303 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 4 1079 287 341 119 50 chr6 64829738 64829957 -84687080 + B4A SINE B4 1 234 -58 4 1079 415 197 24 2 chr6 64830223 64830310 -84686727 + B1_Mur4 SINE Alu 10 95 -52 4 1079 619 268 180 32 chr6 64830834 64831112 -84685925 - Lx8 LINE L1 -1 7472 7154 4 1079 38986 15 2 8 chr6 64831304 64837328 -84679709 + L1Md_A LINE L1 1 5586 -297 4 1079 9452 11 0 0 chr6 64837328 64838323 -84678714 + L1Md_A LINE L1 5587 6581 -1 4 1079 1170 251 77 13 chr6 64838519 64838830 -84678207 - ORR1E LTR MaLR -28 331 1 4 1079 396 244 137 105 chr6 64838830 64839089 -84677948 - ORR1E-int LTR MaLR -53 1527 1235 4 1079 4627 300 40 19 chr6 64839567 64840909 -84676128 - MTE-int LTR MaLR -191 1389 20 4 1079 860 293 14 5 chr6 64840993 64841202 -84675835 - ORR1E LTR MaLR -148 211 1 4 1079 611 236 7 53 chr6 64841362 64841514 -84675523 + ID_B1 SINE B4 71 215 -9 4 1079 465 19 0 0 chr6 64841515 64841569 -84675468 + (TAG)n Simple_repeat Simple_repeat 3 56 0 4 1079 223 121 0 29 chr6 64841616 64841650 -84675387 - ID SINE ID -142 82 50 4 1079 5550 83 1 18 chr6 64841906 64842617 -84674420 + L1_Mus2 LINE L1 5868 6566 0 4 1079 334 262 38 0 chr6 64844246 64844326 -84672711 + B1F SINE Alu 7 89 -60 4 1079 1283 159 130 36 chr6 64844675 64844982 -84672055 + Lx9 LINE L1 7301 7636 -8 4 1079 475 305 113 17 chr6 64846530 64846928 -84670109 - MLT2B1 LTR ERVL -3 564 8 4 1079 235 230 37 98 chr6 64847877 64847959 -84669078 - MLT1F1 LTR MaLR -349 220 144 4 1079 21 57 0 0 chr6 64848204 64848239 -84668798 + AT_rich Low_complexity Low_complexity 1 35 0 4 1079 704 199 56 14 chr6 64848414 64848557 -84668480 + B1_Mur1 SINE Alu 1 149 0 4 1079 216 0 0 0 chr6 64849435 64849459 -84667578 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1079 302 268 165 0 chr6 64849516 64849613 -84667424 + B3 SINE B2 20 132 -84 4 1079 920 179 108 11 chr6 64849613 64849873 -84667164 - Lx7 LINE L1 -91 7605 7321 5 1079 2085 74 16 0 chr6 64849986 64850244 -84666793 - L1_Mus1 LINE L1 0 6567 6306 5 1079 386 283 78 21 chr6 64850619 64850760 -84666277 + B1F1 SINE Alu 1 149 0 5 1079 3920 203 37 62 chr6 64851058 64851974 -84665063 - Lx7 LINE L1 0 7696 6804 5 1079 397 309 70 32 chr6 64852196 64852353 -84664684 + ID_B1 SINE B4 43 205 -19 5 1079 216 286 0 18 chr6 64853001 64853058 -84663979 + ID4 SINE ID 5 60 -23 5 1079 1194 69 7 0 chr6 64853147 64853292 -84663745 - B1_Mus2 SINE Alu 0 147 2 5 1079 624 27 0 0 chr6 64853339 64853413 -84663624 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 1079 304 325 52 67 chr6 64853778 64853945 -84663092 - MLT1A1 LTR MaLR -7 584 378 5 1079 994 312 77 29 chr6 64854313 64854689 -84662348 - MLT1A1 LTR MaLR 0 408 15 5 1079 800 241 80 5 chr6 64855042 64855230 -84661807 + B3 SINE B2 5 206 -10 5 1079 24 0 0 0 chr6 64855419 64855443 -84661594 + AT_rich Low_complexity Low_complexity 1 24 0 5 1079 534 252 31 63 chr6 64855486 64855613 -84661424 + RSINE1 SINE B4 21 143 -22 5 1079 701 277 24 33 chr6 64856191 64856404 -84660633 + MTD LTR MaLR 2 212 -207 5 1079 7937 65 2 6 chr6 64856404 64857993 -84659044 + L1_Mus2 LINE L1 4984 6566 0 5 1079 1011 220 5 15 chr6 64857993 64858196 -84658841 + MTD LTR MaLR 196 396 -23 5 1079 6779 181 67 14 chr6 64858567 64860057 -84656980 - Lx7 LINE L1 -529 7167 5555 5 1079 307 281 36 136 chr6 64861244 64861384 -84655653 - B1F1 SINE Alu -1 148 23 5 1079 378 241 0 0 chr6 64861536 64861615 -84655422 - BC1_Mm scRNA scRNA -65 87 9 5 1079 891 239 8 78 chr6 64862020 64862288 -84654749 - RLTR14 LTR ERV1 -133 249 1 5 1079 1220 141 111 0 chr6 64863398 64863597 -84653440 - URR1B DNA MER1_type 0 225 5 5 1079 247 317 135 75 chr6 64864010 64864058 -84652979 + RSINE1 SINE B4 4 55 -110 5 1079 1214 37 0 0 chr6 64864058 64864194 -84652843 + B1_Mm SINE Alu 2 137 -10 5 1079 297 0 0 0 chr6 64864194 64864227 -84652810 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5 1079 247 317 135 75 chr6 64864227 64864310 -84652727 + RSINE1 SINE B4 56 143 -22 5 1079 284 302 169 76 chr6 64864586 64865002 -84652035 + MamGypLTR1c LTR Gypsy 4 463 -340 5 1079 631 255 117 25 chr6 64865523 64865693 -84651344 + B3 SINE B2 1 179 -37 5 1079 1380 29 82 0 chr6 64865693 64865864 -84651173 + L1Md_A LINE L1 6398 6582 0 5 1079 631 255 117 25 chr6 64865864 64865890 -84651147 + B3 SINE B2 180 215 -1 5 1079 2326 186 36 12 chr6 64865897 64866311 -84650726 + Lx5 LINE L1 6627 7050 0 5 1079 627 275 28 0 chr6 64866362 64866504 -84650533 + B1F SINE Alu 1 146 -3 5 1079 1187 83 0 0 chr6 64866659 64866803 -84650234 + B1_Mus1 SINE Alu 5 148 0 5 1079 261 0 0 0 chr6 64867811 64867840 -84649197 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1079 2214 277 103 21 chr6 64867915 64868708 -84648329 + Lx9 LINE L1 6477 7334 -310 5 1079 372 22 0 0 chr6 64868817 64868862 -84648175 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1079 288 0 0 0 chr6 64868862 64868893 -84648144 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1079 1671 48 0 0 chr6 64868948 64869137 -84647900 + B2_Mm1t SINE B2 4 192 -1 5 1079 21 0 0 0 chr6 64869140 64869161 -84647876 + AT_rich Low_complexity Low_complexity 1 21 0 5 1079 420 108 13 63 chr6 64869180 64869259 -84647778 + B1_Mur3 SINE Alu 75 149 0 5 1079 183 42 0 0 chr6 64869279 64869303 -84647734 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1079 756 238 42 0 chr6 64869438 64869678 -84647359 + L1_Mur3 LINE L1 847 1096 -6616 5 1079 7374 54 5 40 chr6 64869785 64871062 -84645975 - L1Md_F2 LINE L1 -11 6571 5358 5 1079 230 271 444 0 chr6 64871077 64871214 -84645823 - B3A SINE B2 0 198 1 5 1079 608 162 28 49 chr6 64871327 64871470 -84645567 + RMER1A Other Other 884 1023 -7 5 1079 9421 11 0 0 chr6 64871706 64872753 -84644284 + L1Md_T LINE L1 4540 5586 -297 5 1079 9485 9 0 2 chr6 64872753 64873751 -84643286 + L1Md_T LINE L1 5587 6582 0 5 1079 6386 25 8 0 chr6 64873751 64873995 -84643042 + L1Md_A LINE L1 5590 5917 -665 5 1079 4680 8 2 12 chr6 64873995 64874493 -84642544 + MT2_Mm LTR ERVL 1 493 0 5 1079 41339 15 14 0 chr6 64874493 64879780 -84637257 + MERVL-int LTR ERVL 1 5360 -125 5 1079 387 167 46 35 chr6 64879780 64879867 -84637170 + ORR1A3-int LTR MaLR 553 640 -1323 5 1079 322 0 0 0 chr6 64879867 64879905 -84637132 + MERVL-int LTR ERVL 5448 5485 0 5 1079 4680 8 2 12 chr6 64879905 64880403 -84636634 + MT2_Mm LTR ERVL 1 493 0 5 134 6151 15 12 0 chr6 64880403 64881065 -84635972 + L1Md_A LINE L1 5913 6582 0 5 1080 402 348 35 0 chr6 64881236 64881463 -84635574 - L1MC2 LINE L1 -25 6319 6085 5 1080 2715 137 55 19 chr6 64881479 64881956 -84635081 - RLTR33 LTR ERVK 0 678 185 5 1080 3869 51 4 0 chr6 64882973 64883423 -84633614 + L1Md_F3 LINE L1 6132 6583 -1 5 1080 292 349 127 40 chr6 64883425 64884033 -84633004 + L2 LINE L2 1227 1887 -1532 5 1080 329 268 79 31 chr6 64884599 64884726 -84632311 + B1F1 SINE Alu 11 143 -6 5 1080 394 217 0 14 chr6 64884728 64884798 -84632239 + ID4_ SINE ID 2 70 -13 5 1080 542 131 10 0 chr6 64884818 64884917 -84632120 + (GA)n Simple_repeat Simple_repeat 1 100 0 5 1080 180 246 138 0 chr6 64885246 64885311 -84631726 + L2b LINE L2 3233 3306 -69 5 1080 412 318 9 0 chr6 64885879 64885989 -84631048 - ID_B1 SINE B4 -12 212 102 5 1080 444 37 0 0 chr6 64886448 64886502 -84630535 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1080 385 257 50 0 chr6 64886502 64886603 -84630434 - RSINE1 SINE B4 -41 124 19 5 1080 214 272 21 11 chr6 64887481 64887574 -84629463 + (TATG)n Simple_repeat Simple_repeat 3 96 0 5 1080 611 331 62 68 chr6 64887576 64887803 -84629234 - B4A SINE B4 -2 290 51 5 1080 5346 118 15 6 chr6 64887803 64888533 -84628504 + RMER19A LTR ERVK 1 737 0 5 1080 611 331 62 68 chr6 64888533 64888597 -84628440 - B4A SINE B4 -242 50 1 5 1080 233 312 12 48 chr6 64888690 64888774 -84628263 + MT2B LTR ERVL 176 256 -345 5 1080 383 300 0 0 chr6 64888700 64888780 -84628257 + B1F2 SINE Alu 30 109 -40 5 1080 21 0 0 0 chr6 64888794 64888815 -84628222 + AT_rich Low_complexity Low_complexity 1 21 0 5 1080 201 176 0 0 chr6 64889314 64889348 -84627689 + (TTA)n Simple_repeat Simple_repeat 3 36 0 5 1080 1776 158 24 80 chr6 64889348 64889721 -84627316 - ORR1B1 LTR MaLR 0 394 43 5 1080 507 244 0 70 chr6 64889737 64889865 -84627172 - PB1D9 SINE Alu 0 120 2 5 1080 1017 132 73 17 chr6 64889963 64890140 -84626897 + ORR1C1 LTR MaLR 1 187 -191 5 1080 591 84 0 0 chr6 64890140 64890235 -84626802 + (TC)n Simple_repeat Simple_repeat 1 95 0 5 1080 870 165 203 0 chr6 64890355 64890537 -84626500 + URR1A DNA MER1_type 2 220 -6 5 1080 434 282 18 9 chr6 64890733 64890844 -84626193 - PB1D10 SINE Alu -3 114 3 5 1080 259 271 72 72 chr6 64891361 64891489 -84625548 + L1M4 LINE L1 3157 3285 -2861 5 1080 2397 77 9 36 chr6 64891489 64891826 -84625211 + L1_Mus3 LINE L1 6311 6638 0 5 1080 259 271 72 72 chr6 64891826 64891864 -84625173 + L1M4 LINE L1 3286 3323 -2823 5 1080 220 250 17 0 chr6 64891949 64891988 -84625049 + B4A SINE B4 86 124 -168 5 1080 4422 113 47 43 chr6 64891988 64892546 -84624491 + Lx3A LINE L1 6304 6848 -133 5 1080 198 0 0 0 chr6 64892546 64892568 -84624469 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 5 1080 4422 113 47 43 chr6 64892568 64892662 -84624375 + Lx3A LINE L1 6849 6966 -15 5 1080 252 0 0 0 chr6 64892662 64892690 -84624347 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 5 1080 4422 113 47 43 chr6 64892690 64892711 -84624326 + Lx3A LINE L1 6967 6980 -1 5 1080 220 250 17 0 chr6 64892711 64892731 -84624306 + B4A SINE B4 125 145 -147 5 1080 1578 285 92 52 chr6 64892743 64893609 -84623428 + L1M4 LINE L1 3326 4226 -1920 5 1080 452 241 81 81 chr6 64893634 64893783 -84623254 - B1_Mur1 SINE Alu 0 149 1 5 1080 269 173 0 0 chr6 64893907 64893959 -84623078 + Lx8 LINE L1 7420 7471 -2 5 1080 388 302 115 34 chr6 64894056 64894265 -84622772 + RMER13B LTR ERVK 554 779 -129 5 1080 649 212 45 58 chr6 64895086 64895241 -84621796 + B3 SINE B2 2 154 -62 5 1080 330 129 14 54 chr6 64895202 64895276 -84621761 + B1_Mur2 SINE Alu 78 148 -1 5 1080 222 171 207 3 chr6 64896526 64896588 -84620449 - PB1D10 SINE Alu -12 137 45 5 1080 464 0 18 0 chr6 64896614 64896670 -84620367 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1080 723 108 0 0 chr6 64896670 64896798 -84620239 + (TG)n Simple_repeat Simple_repeat 2 130 0 5 1080 519 259 35 56 chr6 64896798 64896941 -84620096 - B1F SINE Alu -9 140 1 5 1080 262 286 44 73 chr6 64897056 64897192 -84619845 + MIR SINE MIR 12 143 -119 5 1080 8022 56 2 13 chr6 64897211 64898218 -84618819 - L1Md_F2 LINE L1 0 6582 5587 5 1080 957 101 37 17 chr6 64898340 64898741 -84618296 + (TAGA)n Simple_repeat Simple_repeat 1 408 0 5 1080 2536 216 102 10 chr6 64899338 64899965 -84617072 - Lx9 LINE L1 -5 7639 6955 5 1080 221 119 24 0 chr6 64900722 64900764 -84616273 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1080 581 286 13 26 chr6 64900811 64900962 -84616075 + B1F1 SINE Alu 1 149 0 5 1080 429 322 122 26 chr6 64901548 64901851 -84615186 - Lx8 LINE L1 -9 7464 7133 5 1080 429 349 0 15 chr6 64901859 64901993 -84615044 - B1_Mur2 SINE Alu -11 138 7 5 1080 363 96 0 0 chr6 64903924 64903976 -84613061 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1080 186 71 0 0 chr6 64904200 64904228 -84612809 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1080 528 198 31 0 chr6 64904369 64904465 -84612572 + B3A SINE B2 1 99 -99 5 1080 290 244 62 25 chr6 64904782 64904862 -84612175 + B3A SINE B2 98 180 -18 5 1080 1036 302 57 78 chr6 64905021 64905316 -84611721 - MT2A LTR ERVL -6 561 187 5 1080 630 0 0 0 chr6 64905316 64905386 -84611651 + (AGATG)n Simple_repeat Simple_repeat 4 73 0 5 1080 1036 310 65 61 chr6 64905386 64905579 -84611458 - MT2A LTR ERVL -347 186 2 5 1080 253 320 78 20 chr6 64905581 64905683 -84611354 - RMER15 LTR ERVL -3 572 465 5 1080 345 349 28 0 chr6 64908370 64908479 -84608558 + RSINE1 SINE B4 50 161 -4 5 1080 228 372 26 0 chr6 64910493 64910571 -84606466 + ID4_ SINE ID 2 81 -2 5 1080 521 202 67 124 chr6 64913134 64913343 -84603694 - B3A SINE B2 -1 197 1 6 1080 403 291 109 8 chr6 64913938 64914066 -84602971 + B1F SINE Alu 1 141 -8 6 1080 343 297 89 0 chr6 64914180 64914281 -84602756 + PB1D10 SINE Alu 2 111 -6 6 1080 252 213 0 0 chr6 64914290 64914351 -84602686 + GA-rich Low_complexity Low_complexity 3 63 0 6 1080 224 314 83 49 chr6 64914428 64914572 -84602465 + B4A SINE B4 2 150 -142 6 1080 444 273 0 0 chr6 64914519 64914618 -84602419 + PB1D9 SINE Alu 13 111 -9 6 1080 378 0 0 0 chr6 64914622 64914664 -84602373 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1080 260 296 117 15 chr6 64914815 64914952 -84602085 + L1MD2 LINE L1 5963 6113 -246 6 1080 235 237 50 17 chr6 64915029 64915089 -84601948 + RSINE1 SINE B4 99 160 -5 6 1080 635 226 83 62 chr6 64915325 64915518 -84601519 + B3A SINE B2 2 198 0 6 1080 573 15 0 0 chr6 64915805 64915871 -84601166 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1080 297 362 61 24 chr6 64915881 64916045 -84600992 + Tigger6b DNA MER2_type 1106 1275 -322 6 1080 862 283 61 38 chr6 64916152 64916416 -84600621 - B4A SINE B4 -22 270 1 6 1080 1251 68 0 0 chr6 64916568 64916714 -84600323 - B1_Mus2 SINE Alu 0 147 2 6 1080 300 91 0 0 chr6 64917304 64917348 -84599689 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1080 1665 179 62 0 chr6 64917438 64917729 -84599308 + MTC LTR MaLR 59 367 -54 6 1080 213 237 0 0 chr6 64917922 64917981 -84599056 + GA-rich Low_complexity Low_complexity 3 61 0 6 1080 723 24 0 0 chr6 64917985 64918070 -84598967 + (GGGA)n Simple_repeat Simple_repeat 4 88 0 6 1080 34 35 0 17 chr6 64918220 64918239 -84598798 + AT_rich Low_complexity Low_complexity 1 19 0 6 1080 812 83 23 0 chr6 64918239 64918372 -84598665 + Lx3_Mus LINE L1 6874 7009 0 6 1080 34 35 0 17 chr6 64918372 64918411 -84598626 + AT_rich Low_complexity Low_complexity 1 39 0 6 1080 31 26 0 0 chr6 64919708 64919746 -84597291 + AT_rich Low_complexity Low_complexity 1 38 0 6 1080 566 193 228 0 chr6 64919750 64919864 -84597173 - B1_Mur2 SINE Alu -5 144 5 6 1080 256 306 113 48 chr6 64920177 64920407 -84596630 - L1MC LINE L1 -2094 5788 5544 6 1080 628 250 125 24 chr6 64921736 64921904 -84595133 + B3A SINE B2 14 198 0 6 1080 251 333 33 33 chr6 64922046 64922167 -84594870 + B1F SINE Alu 29 149 0 6 1080 356 265 0 24 chr6 64922179 64922264 -84594773 + ID4 SINE ID 1 83 0 6 1080 2601 152 39 48 chr6 64922823 64923340 -84593697 + RLTR28 LTR ERVL 1 512 -12 6 1080 1239 57 6 0 chr6 64923495 64923652 -84593385 + B2_Mm2 SINE B2 2 159 -36 6 1080 470 17 17 0 chr6 64923652 64923711 -84593326 + (TAAA)n Simple_repeat Simple_repeat 3 62 0 6 1080 316 199 67 34 chr6 64923754 64923866 -84593171 - Lx7 LINE L1 0 7696 7603 6 1080 1392 24 0 0 chr6 64923866 64924030 -84593007 + (TCTCCC)n Simple_repeat Simple_repeat 3 166 0 6 1080 279 0 0 0 chr6 64924031 64924062 -84592975 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1080 570 240 0 30 chr6 64924097 64924230 -84592807 - B3 SINE B2 -61 155 27 6 1080 210 225 0 0 chr6 64924234 64924274 -84592763 + (CTG)n Simple_repeat Simple_repeat 2 41 0 6 1080 225 108 0 0 chr6 64924284 64924321 -84592716 + (ATG)n Simple_repeat Simple_repeat 2 38 0 6 1080 313 153 194 0 chr6 64924323 64924395 -84592642 - B1_Mur2 SINE Alu 0 149 64 6 1080 255 125 0 0 chr6 64924396 64924436 -84592601 + (CAG)n Simple_repeat Simple_repeat 2 41 0 6 1080 257 244 11 65 chr6 64924654 64924687 -84592350 - L1MEc LINE L1 -4923 1477 1446 6 1080 3458 46 2 2 chr6 64924687 64925083 -84591954 + MTA_Mm LTR MaLR 1 396 0 6 1080 257 244 11 65 chr6 64925083 64925141 -84591896 - L1MEc LINE L1 -4955 1445 1391 6 1080 612 73 0 0 chr6 64925141 64925223 -84591814 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 6 1080 1255 68 0 13 chr6 64925226 64925237 -84591800 - B1_Mus1 SINE Alu 0 148 139 6 1080 216 0 0 0 chr6 64925237 64925261 -84591776 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1080 1255 68 0 13 chr6 64925261 64925399 -84591638 - B1_Mus1 SINE Alu -10 138 1 6 1080 412 331 71 0 chr6 64925551 64925705 -84591332 + RSINE1 SINE B4 1 165 0 6 1080 4117 200 110 10 chr6 64925751 64927317 -84589720 + L1_Rod LINE L1 463 2211 -3636 6 1080 5174 105 17 0 chr6 64927317 64928042 -84588995 + Lx LINE L1 5618 6354 -300 6 1080 1207 192 31 16 chr6 64928044 64928298 -84588739 - ORR1C1 LTR MaLR -120 258 1 6 1080 1171 68 7 14 chr6 64928335 64928483 -84588554 - B1_Mus1 SINE Alu -1 147 1 6 1080 669 269 20 7 chr6 64930034 64930180 -84586857 + RSINE1 SINE B4 12 159 -6 6 1080 272 213 43 0 chr6 64930373 64930452 -84586585 + PB1D10 SINE Alu 35 120 0 6 1080 408 233 49 70 chr6 64930480 64930597 -84586440 + B1F2 SINE Alu 36 149 0 6 1080 327 85 0 0 chr6 64931469 64931516 -84585521 + (TA)n Simple_repeat Simple_repeat 2 48 0 6 1080 31 0 0 0 chr6 64931913 64931944 -84585093 + AT_rich Low_complexity Low_complexity 1 31 0 6 1080 189 0 0 0 chr6 64932690 64932711 -84584326 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 6 1080 423 0 0 0 chr6 64933100 64933147 -84583890 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1080 645 56 0 0 chr6 64933270 64933360 -84583677 + (TG)n Simple_repeat Simple_repeat 2 91 0 6 1080 339 65 0 0 chr6 64933385 64933431 -84583606 + (TGG)n Simple_repeat Simple_repeat 1 46 0 6 1080 240 35 0 0 chr6 64934008 64934037 -84583000 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 6 1080 209 250 0 0 chr6 64934038 64934078 -84582959 + polypurine Low_complexity Low_complexity 3 42 0 6 1080 363 336 42 0 chr6 64934089 64934208 -84582829 + B1F SINE Alu 12 135 -14 6 1080 1091 207 29 10 chr6 64934221 64934426 -84582611 + B3 SINE B2 2 210 -6 6 1080 27 0 0 0 chr6 64934427 64934454 -84582583 + AT_rich Low_complexity Low_complexity 1 27 0 6 1080 756 316 5 19 chr6 64934524 64934737 -84582300 + ID_B1 SINE B4 2 211 -13 6 1080 269 204 157 11 chr6 64935545 64935634 -84581403 + PB1D7 SINE Alu 19 120 0 6 1080 1775 21 0 0 chr6 64935720 64935907 -84581130 + B2_Mm1a SINE B2 1 187 -6 6 1080 203 334 40 0 chr6 64936326 64936423 -84580614 + MIRc SINE MIR 73 173 -35 6 1080 276 329 74 20 chr6 64936423 64936572 -84580465 - MLT1A0 LTR MaLR 0 549 393 6 1080 1419 96 11 0 chr6 64936691 64936878 -84580159 - B2_Mm2 SINE B2 -6 189 1 6 1080 225 0 0 0 chr6 64937157 64937182 -84579855 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1080 1476 226 115 9 chr6 64937263 64937593 -84579444 + ORR1D2 LTR MaLR 5 369 -1 6 1080 710 284 108 30 chr6 64937630 64937964 -84579073 - MLT1A0 LTR MaLR 0 365 6 6 1080 285 328 104 111 chr6 64938163 64938307 -84578730 + RSINE1 SINE B4 3 145 -20 6 1080 768 104 215 0 chr6 64938639 64938774 -84578263 + B2_Mm2 SINE B2 1 164 -31 6 1080 26 62 0 15 chr6 64938774 64938795 -84578242 + AT_rich Low_complexity Low_complexity 1 21 0 6 1080 1401 82 11 6 chr6 64938795 64938978 -84578059 + B2_Mm1t SINE B2 2 185 -8 6 1080 26 62 0 15 chr6 64938978 64939021 -84578016 + AT_rich Low_complexity Low_complexity 1 43 0 6 1080 708 204 79 21 chr6 64939034 64939174 -84577863 + B1F SINE Alu 1 148 -1 6 1080 636 328 6 11 chr6 64939823 64940002 -84577035 + B3A SINE B2 5 182 -16 6 1080 220 191 0 0 chr6 64940008 64940050 -84576987 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1080 331 248 66 47 chr6 64940855 64940982 -84576055 - PB1D9 SINE Alu -9 140 22 6 1080 365 89 330 35 chr6 64941626 64941741 -84575296 - B2_Mm2 SINE B2 0 195 47 6 1080 876 182 14 0 chr6 64941784 64941927 -84575110 - B2_Mm2 SINE B2 -48 147 3 6 1080 207 69 0 0 chr6 64942130 64942159 -84574878 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1080 1333 51 0 11 chr6 64943188 64943368 -84573669 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 6 1080 236 200 17 0 chr6 64943886 64943946 -84573091 + GA-rich Low_complexity Low_complexity 2 62 0 6 1080 864 53 0 0 chr6 64943967 64944081 -84572956 + B1_Mus2 SINE Alu 34 147 0 6 1080 223 315 78 11 chr6 64944135 64944225 -84572812 + B4A SINE B4 53 148 -144 6 1080 405 268 0 20 chr6 64944173 64944272 -84572765 + B1F SINE Alu 13 109 -40 6 1080 372 182 24 120 chr6 64944282 64944372 -84572665 + B2_Mm2 SINE B2 70 147 -48 6 1080 369 0 0 0 chr6 64944372 64944413 -84572624 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1080 372 182 24 120 chr6 64944413 64944447 -84572590 + B2_Mm2 SINE B2 148 182 -13 6 1080 821 200 0 0 chr6 64944461 64944606 -84572431 + B1_Mur4 SINE Alu 6 150 0 6 1080 22 35 0 0 chr6 64944606 64944635 -84572402 + AT_rich Low_complexity Low_complexity 1 29 0 6 1080 718 247 141 10 chr6 64944649 64944841 -84572196 + B4 SINE B4 7 223 -69 6 1080 390 42 0 0 chr6 64944876 64944924 -84572113 + (CATA)n Simple_repeat Simple_repeat 3 50 0 6 1080 378 0 0 0 chr6 64944966 64945008 -84572029 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 6 1080 2035 133 16 0 chr6 64945022 64945344 -84571693 + ORR1A2 LTR MaLR 1 327 0 6 1080 415 302 67 78 chr6 64945868 64946152 -84570885 + B4A SINE B4 12 292 0 6 1080 567 78 0 0 chr6 64946213 64946290 -84570747 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 6 1080 617 297 5 85 chr6 64946340 64946539 -84570498 + ID_B1 SINE B4 3 185 -39 6 1080 207 0 0 0 chr6 64947185 64947208 -84569829 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1080 254 254 99 0 chr6 64948261 64948332 -84568705 - ID_B1 SINE B4 -2 222 145 6 1080 420 203 0 0 chr6 64948381 64948476 -84568561 + CT-rich Low_complexity Low_complexity 35 129 0 7 1080 252 59 0 0 chr6 64948476 64948510 -84568527 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1080 420 203 0 0 chr6 64948510 64948542 -84568495 + polypyrimidine Low_complexity Low_complexity 3 34 0 7 1080 306 0 0 0 chr6 64948545 64948579 -84568458 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1080 262 310 14 14 chr6 64948594 64948666 -84568371 - ID_B1 SINE B4 -61 163 92 6 1080 357 361 24 48 chr6 64948884 64949050 -84567987 - RSINE1 SINE B4 -1 164 3 7 1080 334 20 39 20 chr6 64949098 64949149 -84567888 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 7 1080 1248 108 37 16 chr6 64949149 64949338 -84567699 - B2_Mm2 SINE B2 -1 194 2 7 1080 3360 86 29 41 chr6 64949461 64949949 -84567088 - RLTR45 LTR ERVK 0 482 1 7 1080 482 289 66 7 chr6 64949998 64950134 -84566903 - RSINE1 SINE B4 -21 144 1 7 1080 22 0 0 0 chr6 64950141 64950163 -84566874 + AT_rich Low_complexity Low_complexity 1 22 0 7 1080 248 260 147 20 chr6 64950206 64950308 -84566729 - PB1D10 SINE Alu -1 116 2 7 1080 207 136 45 0 chr6 64950339 64950383 -84566654 + T-rich Low_complexity Low_complexity 4 49 0 7 1080 1063 70 42 0 chr6 64950386 64950528 -84566509 - B1_Mus1 SINE Alu 0 148 1 7 1080 1596 32 27 0 chr6 64950853 64951039 -84565998 + B2_Mm1t SINE B2 1 191 -2 7 1080 21 0 0 0 chr6 64951062 64951083 -84565954 + AT_rich Low_complexity Low_complexity 1 21 0 7 1080 1203 43 0 0 chr6 64951085 64951226 -84565811 - B1_Mus2 SINE Alu -5 142 2 7 1080 697 61 0 0 chr6 64951258 64951357 -84565680 + B1_Mm SINE Alu 49 147 0 7 1080 285 169 62 49 chr6 64951559 64951640 -84565397 + PB1D10 SINE Alu 35 116 -1 7 1080 26 0 0 0 chr6 64952159 64952185 -84564852 + AT_rich Low_complexity Low_complexity 1 26 0 7 1080 1510 168 55 37 chr6 64952289 64952616 -84564421 + ORR1C1 LTR MaLR 32 364 -14 7 1080 294 271 7 7 chr6 64952609 64952710 -84564327 + MTD LTR MaLR 181 296 -123 7 1080 395 170 133 41 chr6 64952838 64952853 -84564184 - B1_Mur4 SINE Alu -1 149 138 7 1080 291 28 0 0 chr6 64952853 64952889 -84564148 + (TTG)n Simple_repeat Simple_repeat 1 36 0 7 1080 395 170 133 41 chr6 64952889 64952971 -84564066 - B1_Mur4 SINE Alu -13 137 43 7 1080 652 188 0 49 chr6 64952975 64953137 -84563900 + (TCTCTG)n Simple_repeat Simple_repeat 3 156 0 7 1080 459 35 0 0 chr6 64953781 64953838 -84563199 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1080 189 0 0 0 chr6 64953932 64953953 -84563084 + (CTG)n Simple_repeat Simple_repeat 1 21 0 7 1080 192 77 0 0 chr6 64953994 64954020 -84563017 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1080 369 253 13 0 chr6 64954417 64954496 -84562541 + B1F SINE Alu 35 114 -35 7 1080 447 175 8 26 chr6 64954509 64954626 -84562411 + GA-rich Low_complexity Low_complexity 1 115 0 7 1080 669 233 98 5 chr6 64954685 64954879 -84562158 + B3 SINE B2 1 212 -4 7 1080 1535 52 0 10 chr6 64954882 64955076 -84561961 + B2_Mm1a SINE B2 1 192 -1 7 1080 24 53 0 0 chr6 64955082 64955120 -84561917 + AT_rich Low_complexity Low_complexity 1 38 0 7 1080 428 276 25 17 chr6 64955346 64955464 -84561573 - PB1D7 SINE Alu -1 119 1 7 1080 516 284 22 0 chr6 64955708 64955842 -84561195 + B1F SINE Alu 13 149 0 7 1080 259 294 53 15 chr6 64956347 64956440 -84560597 + PB1D10 SINE Alu 12 108 -12 7 1080 521 291 0 14 chr6 64956482 64956626 -84560411 + ID_B1 SINE B4 86 223 -1 7 1080 270 81 0 0 chr6 64956871 64956908 -84560129 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 1080 768 225 38 16 chr6 64957060 64957245 -84559792 - B3A SINE B2 -7 191 3 7 1080 1791 197 65 13 chr6 64957478 64957864 -84559173 - MTD LTR MaLR -13 406 1 7 1080 441 0 0 0 chr6 64957927 64957976 -84559061 + (CATAC)n Simple_repeat Simple_repeat 1 49 0 7 1080 301 325 0 0 chr6 64958040 64958160 -84558877 + Tigger1 DNA MER2_type 1358 1477 -941 7 1080 329 276 0 0 chr6 64958206 64958293 -84558744 - ID_B1 SINE B4 -1 223 137 7 1080 357 262 11 135 chr6 64958318 64958503 -84558534 - RSINE1 SINE B4 0 165 4 7 1080 518 279 16 0 chr6 64958512 64958641 -84558396 - ID_B1 SINE B4 -3 221 91 7 1080 412 260 23 75 chr6 64958682 64958815 -84558222 + B1F SINE Alu 16 141 -8 7 1080 365 232 71 0 chr6 64958835 64958947 -84558090 + Tigger1 DNA MER2_type 1595 1714 -704 7 1080 483 227 122 47 chr6 64958991 64959245 -84557792 + Tigger1 DNA MER2_type 1817 2089 -329 7 1080 277 237 75 0 chr6 64959245 64959338 -84557699 + Tigger1 DNA MER2_type 2218 2317 -101 7 1080 1004 92 21 7 chr6 64959339 64959482 -84557555 + B1_Mus1 SINE Alu 2 146 -2 7 1080 2220 105 33 60 chr6 64959615 64959950 -84557087 - ORR1A3 LTR MaLR 0 326 1 7 1080 794 202 125 0 chr6 64960049 64960217 -84556820 + B3 SINE B2 1 189 -27 7 1080 1131 89 0 0 chr6 64960297 64960455 -84556582 + B2_Mm2 SINE B2 1 158 -37 7 1080 279 0 0 0 chr6 64960456 64960487 -84556550 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 7 1080 549 0 0 0 chr6 64960491 64960552 -84556485 + (GAAA)n Simple_repeat Simple_repeat 3 63 0 7 1080 1049 37 75 0 chr6 64960552 64960686 -84556351 + B1_Mm SINE Alu 2 145 -2 7 1080 207 0 0 0 chr6 64960686 64960709 -84556328 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 7 1080 1395 93 17 21 chr6 64960717 64960935 -84556102 - L1_Mur2 LINE L1 -1089 4794 4543 7 1080 1146 56 21 0 chr6 64960935 64961078 -84555959 - B1_Mm SINE Alu 0 147 2 7 1080 873 202 187 29 chr6 64961078 64961176 -84555861 - L1_Mur2 LINE L1 -1341 4542 4409 7 1080 1243 80 103 0 chr6 64961176 64961193 -84555844 - B2_Mm2 SINE B2 0 195 179 7 1080 216 0 0 0 chr6 64961193 64961217 -84555820 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 7 1080 1243 80 103 0 chr6 64961217 64961374 -84555663 - B2_Mm2 SINE B2 -17 178 4 7 1080 873 202 187 29 chr6 64961374 64961460 -84555577 - L1_Mur2 LINE L1 -1475 4408 4323 7 1080 4725 170 57 19 chr6 64961460 64962237 -84554800 + Lx3C LINE L1 5986 6792 -184 7 1080 180 0 0 0 chr6 64962237 64962257 -84554780 + (GCCTG)n Simple_repeat Simple_repeat 1 20 0 7 1080 4725 170 57 19 chr6 64962257 64962432 -84554605 + Lx3C LINE L1 6793 6973 -3 7 1080 873 154 0 35 chr6 64962432 64962459 -84554578 - L1_Mur2 LINE L1 -1561 4322 4292 7 1080 1157 84 9 116 chr6 64962461 64962634 -84554403 + B2_Mm2 SINE B2 1 169 -26 7 1080 1075 65 29 0 chr6 64962634 64962772 -84554265 + B1_Mus1 SINE Alu 1 142 -6 7 1080 1157 84 9 116 chr6 64962772 64962813 -84554224 + B2_Mm2 SINE B2 170 192 -3 7 1080 817 266 152 23 chr6 64962877 64963219 -84553818 - MTD LTR MaLR -21 398 13 7 1080 804 213 180 0 chr6 64963967 64964150 -84552887 + B3 SINE B2 1 216 0 7 1080 328 218 0 56 chr6 64964169 64964262 -84552775 + ORR1D2 LTR MaLR 9 91 -279 7 1080 242 282 10 124 chr6 64964459 64964556 -84552481 + RLTR33 LTR ERVK 445 530 -148 7 1080 858 33 0 62 chr6 64964622 64964742 -84552295 + B1_Mm SINE Alu 26 139 -8 7 1080 212 0 0 35 chr6 64964742 64964771 -84552266 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1080 923 293 82 75 chr6 64964801 64965177 -84551860 + Lx8 LINE L1 6211 6589 -884 7 1080 1828 189 10 68 chr6 64965184 64965599 -84551438 + RMER10B LTR ERVL 1 391 -7 7 1080 1018 258 300 35 chr6 64965600 64966008 -84551029 + Lx8 LINE L1 6632 7147 -326 7 1080 330 114 28 14 chr6 64966051 64966122 -84550915 + GA-rich Low_complexity Low_complexity 4 75 0 7 1080 44 46 0 0 chr6 64966219 64966284 -84550753 + AT_rich Low_complexity Low_complexity 1 65 0 7 1080 1296 107 11 0 chr6 64966413 64966600 -84550437 - B2_Mm1t SINE B2 -3 190 2 7 1080 374 235 86 0 chr6 64966648 64966729 -84550308 - B1_Mur3 SINE Alu -61 88 1 7 1080 456 282 69 0 chr6 64966775 64966906 -84550131 - ID_B1 SINE B4 -5 219 80 7 1080 1085 103 0 20 chr6 64966927 64967076 -84549961 + B1_Mus1 SINE Alu 2 147 -1 7 1080 1207 15 0 0 chr6 64967100 64967236 -84549801 + B1_Mus2 SINE Alu 1 136 -11 7 1080 255 31 0 0 chr6 64967236 64967268 -84549769 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 7 1080 537 223 106 15 chr6 64967300 64967432 -84549605 - B1F SINE Alu -5 144 1 7 1080 2968 49 197 25 chr6 64967527 64967964 -84549073 + RLTR1B LTR ERV1 1 512 0 7 1080 220 241 0 48 chr6 64968658 64968741 -84548296 + GA-rich Low_complexity Low_complexity 2 80 0 7 1080 1226 41 0 13 chr6 64969227 64969376 -84547661 + B1_Mus2 SINE Alu 1 147 0 7 1080 785 268 135 19 chr6 64969398 64969826 -84547211 - RMER5 LTR ERV1 -10 524 48 7 1080 312 27 0 0 chr6 64970104 64970141 -84546896 + (CATA)n Simple_repeat Simple_repeat 2 38 0 7 1080 235 221 132 0 chr6 64970159 64970227 -84546810 - ID_B1 SINE B4 -22 202 126 7 1080 1449 54 5 16 chr6 64970258 64970445 -84546592 + B2_Mm1a SINE B2 2 186 -7 7 1080 920 218 34 29 chr6 64970532 64970740 -84546297 - B3 SINE B2 0 216 8 7 1080 23 33 0 0 chr6 64970749 64970779 -84546258 + AT_rich Low_complexity Low_complexity 1 30 0 7 1080 195 222 0 0 chr6 64970787 64970832 -84546205 + (CCA)n Simple_repeat Simple_repeat 1 45 0 7 1080 282 257 158 0 chr6 64970838 64970939 -84546098 - B1_Mur2 SINE Alu -10 139 23 7 1080 361 231 10 52 chr6 64970972 64971068 -84545969 - ID_B1 SINE B4 -131 93 2 7 1080 538 192 192 0 chr6 64971276 64971396 -84545641 + B1_Mur1 SINE Alu 1 143 -6 7 1080 651 13 0 0 chr6 64971398 64971474 -84545563 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 7 1080 240 111 0 0 chr6 64972366 64972402 -84544635 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1080 376 215 106 11 chr6 64973073 64973167 -84543870 - B1_Mus2 SINE Alu -21 126 24 7 1080 550 226 69 133 chr6 64973296 64973657 -84543380 - RLTR33 LTR ERVK -120 379 4 7 1080 924 129 0 0 chr6 64973679 64973849 -84543188 + (TTTC)n Simple_repeat Simple_repeat 2 171 0 7 1080 920 83 105 0 chr6 64973853 64973986 -84543051 - B1_Mm SINE Alu 0 147 1 7 1080 228 67 0 0 chr6 64974123 64974153 -84542884 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 1080 217 244 0 0 chr6 64974219 64974264 -84542773 - ID4_ SINE ID 0 83 39 7 1080 1046 132 110 20 chr6 64974332 64974585 -84542452 + RMER6A LTR ERVK 1 360 -396 7 1080 1747 154 81 30 chr6 64974589 64974958 -84542079 - RLTR23 LTR ERV1 0 430 43 7 1080 1428 54 43 0 chr6 64975565 64975725 -84541312 + B2_Mm1t SINE B2 1 160 -33 8 1080 207 0 0 0 chr6 64975725 64975748 -84541289 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 8 1080 1428 54 43 0 chr6 64975748 64975771 -84541266 + B2_Mm1t SINE B2 161 191 -2 8 1080 25 0 0 0 chr6 64976069 64976094 -84540943 + AT_rich Low_complexity Low_complexity 1 25 0 8 1080 1841 168 48 89 chr6 64976173 64976280 -84540757 - MTD LTR MaLR 0 419 324 8 1080 1254 20 0 7 chr6 64976280 64976428 -84540609 + B1_Mm SINE Alu 1 147 0 8 1080 1841 168 48 89 chr6 64976428 64976757 -84540280 - MTD LTR MaLR -96 323 1 8 1080 881 197 161 0 chr6 64976832 64977025 -84540012 + URR1B DNA MER1_type 2 225 0 8 1080 248 267 204 43 chr6 64977753 64977964 -84539073 - Charlie13b DNA Charlie -22 490 246 8 1080 2306 184 82 10 chr6 64978107 64978607 -84538430 + ORR1D2-int LTR MaLR 819 1354 -16 8 1080 1195 279 42 17 chr6 64978609 64978970 -84538067 + ORR1D2 LTR MaLR 1 370 0 8 1080 568 255 27 33 chr6 64979006 64979156 -84537881 + B1_Mur2 SINE Alu 1 149 0 8 1080 209 243 0 26 chr6 64979223 64979299 -84537738 + (TA)n Simple_repeat Simple_repeat 1 74 0 8 1080 1711 174 130 81 chr6 64979299 64979752 -84537285 - MT2A LTR ERVL -77 456 3 8 1080 471 347 14 14 chr6 64979752 64979888 -84537149 + RSINE1 SINE B4 24 159 -6 8 1080 216 0 0 0 chr6 64979892 64979916 -84537121 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1080 330 87 0 0 chr6 64980201 64980247 -84536790 + (T)n Simple_repeat Simple_repeat 1 46 0 8 1080 828 162 0 0 chr6 64980429 64980577 -84536460 + GA-rich Low_complexity Low_complexity 1 148 0 8 1080 774 178 20 20 chr6 64980588 64980737 -84536300 + B1_Mur4 SINE Alu 1 149 -1 8 1080 275 0 0 28 chr6 64980750 64980786 -84536251 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1080 546 28 0 0 chr6 64980792 64980863 -84536174 + B1_Mus2 SINE Alu 77 147 0 8 1080 189 0 0 0 chr6 64980863 64980884 -84536153 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1080 360 0 0 0 chr6 64980894 64980934 -84536103 + (CAAAC)n Simple_repeat Simple_repeat 3 42 0 8 1080 336 78 46 15 chr6 64980987 64981052 -84535985 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 8 1080 2441 109 136 43 chr6 64981217 64981658 -84535379 + RLTR45 LTR ERVK 1 482 0 8 1080 409 254 38 145 chr6 64981675 64981750 -84535287 + B3 SINE B2 1 76 -140 8 1080 900 164 14 0 chr6 64981750 64981896 -84535141 + B1_Mus1 SINE Alu 1 148 0 8 1080 183 42 0 0 chr6 64981905 64981929 -84535108 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 8 1080 409 254 38 145 chr6 64981929 64982078 -84534959 + B3 SINE B2 77 210 -6 8 1080 1333 75 5 110 chr6 64982155 64982364 -84534673 + B2_Mm2 SINE B2 1 187 -8 8 1080 305 298 106 0 chr6 64982440 64982544 -84534493 - ID_B1 SINE B4 0 224 110 8 1080 856 136 30 0 chr6 64982544 64982676 -84534361 - B1_Mur4 SINE Alu -10 140 5 8 1080 382 250 11 43 chr6 64982952 64983044 -84533993 + PB1D10 SINE Alu 1 89 -28 8 1080 579 246 0 0 chr6 64983086 64983208 -84533829 + B1_Mur1 SINE Alu 23 144 -5 8 1080 24 32 0 0 chr6 64983643 64983674 -84533363 + AT_rich Low_complexity Low_complexity 1 31 0 8 1080 707 181 7 21 chr6 64983674 64983815 -84533222 - B1_Mur3 SINE Alu -1 148 10 8 1080 360 0 0 0 chr6 64983815 64983855 -84533182 + (TTTTC)n Simple_repeat Simple_repeat 1 40 0 8 1080 267 138 69 0 chr6 64983867 64983954 -84533083 + (TA)n Simple_repeat Simple_repeat 1 93 0 8 1080 243 146 0 0 chr6 64983995 64984036 -84533001 + (TTCTC)n Simple_repeat Simple_repeat 1 41 0 8 1080 774 181 40 46 chr6 64984036 64984210 -84532827 - B2_Mm2 SINE B2 -20 175 3 8 1080 290 194 65 0 chr6 64984310 64984372 -84532665 - ID_B1 SINE B4 -140 152 84 8 1080 525 170 21 0 chr6 64984499 64984593 -84532444 - B1_Mur3 SINE Alu -7 142 47 8 1080 349 264 0 0 chr6 64984886 64984977 -84532060 + B1_Mur2 SINE Alu 46 136 -13 8 1080 273 57 0 0 chr6 64984978 64985013 -84532024 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1080 913 71 0 0 chr6 64985014 64985140 -84531897 - B1_Mus2 SINE Alu -21 126 1 8 1080 1358 102 5 0 chr6 64985142 64985328 -84531709 - B2_Mm1t SINE B2 -5 188 2 8 1080 779 105 0 8 chr6 64985363 64985488 -84531549 + (GAAA)n Simple_repeat Simple_repeat 1 124 0 8 1080 378 200 65 28 chr6 64986089 64986197 -84530840 - BC1_Mm scRNA scRNA -38 114 3 8 1080 1591 53 0 0 chr6 64986669 64986858 -84530179 - B2_Mm1a SINE B2 -4 189 1 8 1080 391 302 21 14 chr6 64987087 64987228 -84529809 - B1F1 SINE Alu -7 142 1 8 1080 207 0 0 0 chr6 64987251 64987274 -84529763 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1080 249 235 265 0 chr6 64987434 64987460 -84529577 + B1F1 SINE Alu 1 129 -20 8 1080 404 211 0 0 chr6 64987460 64987536 -84529501 + ID_B1 SINE B4 129 204 -20 8 1080 457 282 36 0 chr6 64987812 64987922 -84529115 - B1F2 SINE Alu -11 138 25 8 1080 441 310 9 0 chr6 64987951 64988064 -84528973 - ID_B1 SINE B4 -21 203 90 8 1080 1566 166 22 185 chr6 64988070 64988529 -84528508 - ORR1C2 LTR MaLR 0 384 1 8 1080 770 213 20 179 chr6 64988551 64989059 -84527978 - Lx7 LINE L1 0 7696 7270 8 1080 681 13 0 0 chr6 64989079 64989157 -84527880 + (TTCTC)n Simple_repeat Simple_repeat 2 79 0 8 1080 1070 67 30 0 chr6 64989175 64989310 -84527727 - B1_Mm SINE Alu -7 140 2 8 1080 259 222 111 0 chr6 64989311 64989374 -84527663 - Lx7 LINE L1 -422 7274 7205 8 1080 269 257 71 35 chr6 64989377 64989405 -84527632 + YREP_Mm Unknown Unknown 156 297 -1511 8 1080 343 269 73 9 chr6 64989405 64989514 -84527523 - ID_B1 SINE B4 -7 217 102 8 1080 261 0 0 0 chr6 64989546 64989575 -84527462 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1080 210 250 0 0 chr6 64989588 64989632 -84527405 + T-rich Low_complexity Low_complexity 2 45 0 8 1080 257 292 94 0 chr6 64989633 64989729 -84527308 - ID_B1 SINE B4 -35 189 85 8 1080 1953 141 28 25 chr6 64990120 64990484 -84526553 - RLTR14 LTR ERV1 -4 378 14 8 1080 618 81 0 0 chr6 64990477 64990564 -84526473 - MT2B2 LTR ERVL -497 87 1 8 1080 416 265 20 0 chr6 64990564 64990662 -84526375 + Lx7 LINE L1 7243 7342 -354 8 1080 324 0 0 0 chr6 64990683 64990719 -84526318 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 8 1080 207 0 0 0 chr6 64990819 64990842 -84526195 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1080 186 133 0 0 chr6 64990859 64990889 -84526148 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1080 922 43 0 0 chr6 64991073 64991190 -84525847 - B1_Mus1 SINE Alu -10 138 22 8 1080 510 314 21 11 chr6 64991279 64991466 -84525571 + MLT1B LTR MaLR 1 189 -201 8 1080 267 31 0 0 chr6 64992064 64992096 -84524941 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1080 481 301 0 24 chr6 64992096 64992222 -84524815 - RSINE1 SINE B4 -16 149 27 8 1080 504 216 63 28 chr6 64993809 64993952 -84523085 - B1F2 SINE Alu 0 149 2 8 1080 342 276 48 8 chr6 64994277 64994401 -84522636 - RSINE1 SINE B4 -33 132 4 8 1080 1093 75 0 20 chr6 64994655 64994805 -84522232 - B1_Mus1 SINE Alu 0 148 2 8 1080 1476 198 68 6 chr6 64994889 64995214 -84521823 + MTC LTR MaLR 1 345 -76 8 1080 1305 24 156 0 chr6 64995269 64995287 -84521750 - B2_Mm1a SINE B2 0 193 176 8 1080 243 0 0 0 chr6 64995287 64995314 -84521723 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 8 1080 1305 24 156 0 chr6 64995314 64995462 -84521575 - B2_Mm1a SINE B2 -18 175 2 8 1080 301 146 0 35 chr6 64995530 64995587 -84521450 - B2_Mm2 SINE B2 -94 101 47 8 1080 1163 106 6 0 chr6 64995623 64995793 -84521244 - B2_Mm1t SINE B2 -22 171 1 8 1080 283 189 8 8 chr6 64995836 64995898 -84521139 - B1_Mur4 SINE Alu -61 89 26 8 1080 241 246 35 0 chr6 64995897 64995954 -84521083 - ID_B1 SINE B4 -63 161 103 8 1080 266 275 32 21 chr6 64996002 64996095 -84520942 + CT-rich Low_complexity Low_complexity 2 95 0 8 1080 778 236 36 5 chr6 64996584 64996776 -84520261 - B3 SINE B2 -8 208 11 8 1080 456 213 130 30 chr6 64996803 64996934 -84520103 - B1_Mur2 SINE Alu 0 149 6 8 1080 951 47 8 0 chr6 64997224 64997353 -84519684 - B1_Mus2 SINE Alu 0 147 18 8 1080 809 61 9 0 chr6 64997349 64997463 -84519574 - B1_Mus2 SINE Alu -11 136 22 8 1080 1038 67 7 0 chr6 64997463 64997598 -84519439 - B1_Mus2 SINE Alu -11 136 1 8 1080 420 20 0 0 chr6 64998563 64998612 -84518425 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1080 550 258 112 12 chr6 64998641 64998802 -84518235 - B3 SINE B2 -35 181 5 8 1080 1037 103 0 14 chr6 64998842 64998989 -84518048 - B1_Mus1 SINE Alu 0 148 4 8 1080 418 308 32 24 chr6 64998992 64999115 -84517922 - ID_B1 SINE B4 -10 214 91 8 1080 445 114 13 0 chr6 64999415 64999494 -84517543 + B1_Mus2 SINE Alu 2 81 -66 8 1080 632 100 11 0 chr6 64999475 64999565 -84517472 - B1_Mus1 SINE Alu -56 92 2 8 1080 253 47 47 0 chr6 64999579 64999622 -84517415 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 8 1080 1128 56 28 0 chr6 64999623 64999766 -84517271 - B1_Mus1 SINE Alu -1 147 1 8 1080 310 310 10 29 chr6 65000352 65000455 -84516582 + RSINE1 SINE B4 36 136 -29 1 1080 866 94 24 0 chr6 65000956 65001083 -84515954 - B1_Mur4 SINE Alu -20 130 1 2 1080 259 270 76 59 chr6 65001397 65001515 -84515522 + PB1D7 SINE Alu 1 120 0 3 1080 1238 34 0 0 chr6 65002041 65002188 -84514849 - B1_Mm SINE Alu 0 147 1 4 1080 1110 101 18 12 chr6 65002333 65002504 -84514533 + B2_Mm2 SINE B2 1 172 -23 5 1080 207 0 0 0 chr6 65003022 65003045 -84513992 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1080 1027 73 0 0 chr6 65003045 65003182 -84513855 - B1_Mus1 SINE Alu -11 137 1 7 1080 802 169 0 75 chr6 65003242 65003402 -84513635 - B1_Mur4 SINE Alu -1 149 2 8 1080 237 191 21 0 chr6 65003604 65003651 -84513386 - L2a LINE L2 -268 3158 3111 9 1080 463 265 93 29 chr6 65003775 65003915 -84513122 - B1F1 SINE Alu 0 149 1 1 1080 671 293 179 25 chr6 65003918 65004355 -84512682 - L2a LINE L2 -540 2879 2376 9 1080 877 51 0 0 chr6 65004359 65004476 -84512561 + B1_Mus1 SINE Alu 32 148 0 1 1080 263 237 45 21 chr6 65004632 65004713 -84512324 - PB1D10 SINE Alu -33 116 36 1 1080 207 372 88 42 chr6 65004722 65004885 -84512152 - L2a LINE L2 -1104 2315 2150 9 1080 878 190 69 39 chr6 65004885 65005088 -84511949 + B3 SINE B2 2 210 -6 1 1080 207 372 88 42 chr6 65005088 65005140 -84511897 - L2a LINE L2 -1270 2149 2091 9 1080 297 267 123 78 chr6 65005498 65005856 -84511181 - L1MC4 LINE L1 -405 7637 7264 1 1080 488 274 71 31 chr6 65006638 65006834 -84510203 - B3 SINE B2 -11 205 2 1 1080 450 262 47 8 chr6 65006872 65006999 -84510038 - RSINE1 SINE B4 -22 143 12 1 1080 792 134 8 23 chr6 65007505 65007635 -84509402 + B1_Mm SINE Alu 9 136 -11 1 1080 609 54 0 88 chr6 65007677 65007694 -84509343 - B1_Mus2 SINE Alu -1 146 138 1 1080 306 0 0 0 chr6 65007694 65007728 -84509309 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1080 609 69 18 90 chr6 65007728 65007824 -84509213 - B1_Mus2 SINE Alu -10 137 2 1 1080 361 249 29 13 chr6 65008689 65008808 -84508229 - B1F SINE Alu -1 119 6 2 1080 995 229 72 20 chr6 65009245 65009494 -84507543 - Lx5 LINE L1 0 7050 6789 2 1080 1730 142 10 7 chr6 65009485 65009782 -84507255 - L1_Mur2 LINE L1 -3440 2437 2140 2 1080 9256 124 35 24 chr6 65009798 65010946 -84506091 - Lx4A LINE L1 -2 7056 5892 2 1080 2329 118 47 27 chr6 65010946 65011347 -84505690 - RLTR9E LTR ERVK 0 409 1 2 16 9256 105 105 128 chr6 65011347 65011993 -84505044 - Lx4A LINE L1 -1167 5891 5186 2 1081 712 43 0 60 chr6 65011993 65012093 -84504944 - B1_Mus2 SINE Alu 0 147 54 2 1081 9256 105 105 128 chr6 65012093 65012299 -84504738 - Lx4A LINE L1 -1167 5185 4959 2 1081 1309 111 21 0 chr6 65012299 65012488 -84504549 - B2_Mm2 SINE B2 -2 193 1 2 1081 4851 105 106 129 chr6 65012488 65012609 -84504428 - Lx4A LINE L1 -919 4958 4838 2 1081 3117 151 185 60 chr6 65012608 65013240 -84503797 - Lx4A LINE L1 -3721 2156 1563 2 1081 297 0 0 0 chr6 65013240 65013273 -84503764 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1081 1114 56 14 0 chr6 65013279 65013423 -84503614 - B1_Mus2 SINE Alu 0 147 2 2 1081 3117 209 67 72 chr6 65013423 65014304 -84502733 - Lx4A LINE L1 -4405 1472 563 2 1081 562 32 3 0 chr6 65015146 65015230 -84501807 - L1Md_F2 LINE L1 -2 6582 6497 2 1081 1134 55 7 0 chr6 65015526 65015672 -84501365 - B1_Mus2 SINE Alu 0 147 1 3 1081 651 224 30 7 chr6 65015762 65015897 -84501140 - B3 SINE B2 -2 214 77 3 1081 632 186 110 24 chr6 65016202 65016329 -84500708 + B1_Mur3 SINE Alu 2 139 -10 3 1081 231 379 24 8 chr6 65016623 65016748 -84500289 + MIRb SINE MIR 130 256 -12 3 1081 297 0 0 0 chr6 65017191 65017224 -84499813 + (CCCTAA)n Simple_repeat Simple_repeat 6 38 0 3 1081 706 226 87 38 chr6 65017243 65017427 -84499610 + B3 SINE B2 18 210 -6 3 1081 252 0 0 0 chr6 65017432 65017460 -84499577 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1081 927 152 149 48 chr6 65017656 65017884 -84499153 - Lx4B LINE L1 -1 7057 6807 3 1081 463 335 73 35 chr6 65018075 65018289 -84498748 + ID_B1 SINE B4 3 246 -46 3 1081 231 350 12 0 chr6 65018314 65018394 -84498643 + ID4_ SINE ID 1 81 -2 3 1081 461 319 43 60 chr6 65019118 65019556 -84497481 - RLTR12B LTR ERVK -104 464 44 4 1081 23 0 0 0 chr6 65019664 65019687 -84497350 + AT_rich Low_complexity Low_complexity 1 23 0 4 1081 914 48 24 0 chr6 65019690 65019818 -84497219 - B1_Mus1 SINE Alu -4 144 2 4 1081 411 307 62 27 chr6 65019829 65020053 -84496984 - L1MB5 LINE L1 -54 6120 5889 4 1081 195 129 0 0 chr6 65020093 65020124 -84496913 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1081 1080 49 35 0 chr6 65020124 65020266 -84496771 - B1_Mm SINE Alu 0 147 1 4 1081 261 253 0 107 chr6 65020279 65020301 -84496736 - ID_B1 SINE B4 -42 182 108 4 1081 310 220 0 48 chr6 65020301 65020363 -84496674 - PB1D10 SINE Alu -32 85 27 4 1081 319 246 57 78 chr6 65020473 65020604 -84496433 + ID_B1 SINE B4 81 208 -16 4 1081 408 274 28 0 chr6 65020604 65020710 -84496327 + B3A SINE B2 4 112 -86 4 1081 523 236 19 0 chr6 65020712 65020818 -84496219 - B1_Mur3 SINE Alu -40 109 2 5 1081 246 382 32 38 chr6 65020818 65020850 -84496187 - ID_B1 SINE B4 -37 187 54 5 1081 586 304 35 25 chr6 65020850 65021133 -84495904 + B4A SINE B4 1 286 -6 5 1081 246 382 32 38 chr6 65021133 65021179 -84495858 - ID SINE ID -171 53 5 5 1081 270 0 0 0 chr6 65021256 65021286 -84495751 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5 1081 687 88 193 0 chr6 65021286 65021400 -84495637 - B1_Mur3 SINE Alu -13 136 1 5 1081 579 29 0 0 chr6 65022479 65022548 -84494489 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 1081 784 188 14 20 chr6 65022930 65023077 -84493960 + B1_Mur1 SINE Alu 3 148 -1 5 1081 275 364 93 36 chr6 65023590 65023784 -84493253 + Kanga1b DNA Tc2 186 390 -389 5 1081 23 33 0 0 chr6 65023866 65023896 -84493141 + AT_rich Low_complexity Low_complexity 1 30 0 5 1081 689 322 92 26 chr6 65023906 65024212 -84492825 - MER2 DNA MER2_type -14 331 6 5 1081 23 0 0 0 chr6 65024694 65024717 -84492320 + AT_rich Low_complexity Low_complexity 1 23 0 6 1081 375 83 0 0 chr6 65025151 65025211 -84491826 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1081 718 291 57 28 chr6 65028125 65028337 -84488700 + ID_B1 SINE B4 7 224 0 6 1081 217 246 0 0 chr6 65028618 65028675 -84488362 + T-rich Low_complexity Low_complexity 1 57 0 6 1081 825 189 7 0 chr6 65028675 65028818 -84488219 - B1_Mur3 SINE Alu -5 144 1 6 1081 198 167 0 0 chr6 65028910 65028946 -84488091 + CT-rich Low_complexity Low_complexity 5 40 0 6 1081 1263 73 0 6 chr6 65028954 65029120 -84487917 - B2_Mm2 SINE B2 -29 166 2 6 1081 710 274 24 38 chr6 65030048 65030257 -84486780 - B3 SINE B2 -10 206 1 6 1081 258 368 42 0 chr6 65030262 65030357 -84486680 - PB1D10 SINE Alu 0 117 19 6 1081 581 250 9 0 chr6 65030362 65030474 -84486563 - ID_B1 SINE B4 -19 205 93 6 1081 667 257 58 6 chr6 65031021 65031193 -84485844 - B3A SINE B2 -16 182 2 7 1081 32 57 0 0 chr6 65031459 65031512 -84485525 + AT_rich Low_complexity Low_complexity 1 53 0 7 1081 609 308 100 0 chr6 65031638 65031813 -84485224 + B3 SINE B2 6 199 -17 7 1081 532 246 42 14 chr6 65031884 65032028 -84485009 + B1_Mur1 SINE Alu 2 149 0 7 1081 1192 61 0 0 chr6 65032513 65032661 -84484376 - B1_Mus1 SINE Alu 0 148 1 7 1081 1651 238 93 34 chr6 65032859 65033384 -84483653 - RLTR20A2 LTR ERVK -67 511 7 7 1081 2101 39 0 8 chr6 65034288 65034548 -84482489 + L1Md_F2 LINE L1 6313 6570 -12 7 1081 397 270 6 98 chr6 65035008 65035172 -84481865 - B1F SINE Alu 0 149 1 7 1081 464 227 59 0 chr6 65035295 65035414 -84481623 + B1F1 SINE Alu 1 126 -23 7 1081 578 288 40 28 chr6 65036496 65036698 -84480339 + B3A SINE B2 6 211 -5 7 1081 311 276 0 58 chr6 65037705 65037731 -84479306 - BC1_Mm scRNA scRNA -49 103 6 8 1081 374 260 0 13 chr6 65037731 65037809 -84479228 - ID SINE ID -142 82 6 8 1081 327 324 148 22 chr6 65038496 65038679 -84478358 + B3 SINE B2 1 206 -10 8 1081 27 0 0 0 chr6 65038679 65038706 -84478331 + AT_rich Low_complexity Low_complexity 1 27 0 8 1081 215 170 0 54 chr6 65040271 65040327 -84476710 + T-rich Low_complexity Low_complexity 5 57 0 8 1081 367 196 40 191 chr6 65040733 65040859 -84476178 + PB1D10 SINE Alu 21 127 -22 8 1081 524 199 71 8 chr6 65041329 65041456 -84475581 - Lx4A LINE L1 -4 7054 6920 8 1081 325 346 12 58 chr6 65041520 65041692 -84475345 - MLT1A LTR MaLR -210 164 1 8 1081 405 238 39 83 chr6 65041734 65041890 -84475147 - B1F SINE Alu 0 149 1 8 1081 452 345 7 14 chr6 65042808 65042949 -84474088 + ID_B1 SINE B4 82 221 -3 8 1081 4070 33 31 0 chr6 65042989 65043477 -84473560 + RLTR1C LTR ERV1 1 503 0 9 1081 336 271 11 45 chr6 65043499 65043610 -84473427 - PB1 SINE Alu -9 118 11 9 1081 835 201 21 21 chr6 65043611 65043799 -84473238 - B2_Mm2 SINE B2 -6 189 2 9 1081 24 32 0 0 chr6 65044209 65044240 -84472797 + AT_rich Low_complexity Low_complexity 1 31 0 9 1081 584 228 110 0 chr6 65044439 65044566 -84472471 - B1_Mur1 SINE Alu -6 143 3 9 1081 252 294 42 32 chr6 65044930 65045025 -84472012 - ID_B1 SINE B4 -12 212 117 9 1081 692 247 61 20 chr6 65045203 65045401 -84471636 - B3 SINE B2 -2 214 9 9 1081 25 0 0 0 chr6 65045409 65045434 -84471603 + AT_rich Low_complexity Low_complexity 1 25 0 9 1081 180 0 0 0 chr6 65045996 65046016 -84471021 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9 1081 285 98 0 0 chr6 65047051 65047092 -84469945 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1081 305 265 92 0 chr6 65047148 65047246 -84469791 - L1MC4a LINE L1 -66 7816 7710 1 1081 300 181 40 27 chr6 65047936 65048010 -84469027 - Lx8 LINE L1 -2 7471 7397 1 1081 1240 41 0 0 chr6 65048988 65049135 -84467902 - B1_Mus1 SINE Alu -1 147 1 1 1081 219 36 0 0 chr6 65049656 65049684 -84467353 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1081 1010 101 14 0 chr6 65049891 65050030 -84467007 - B1_Mus2 SINE Alu -5 142 2 1 1081 970 97 15 0 chr6 65050077 65050211 -84466826 - B1_Mm SINE Alu -11 136 1 1 1081 38280 39 0 2 chr6 65050394 65056636 -84460401 - L1Md_T LINE L1 0 6585 285 1 1081 853 65 186 8 chr6 65056646 65056770 -84460267 - B1_Mm SINE Alu -1 146 1 1 1081 243 0 0 0 chr6 65056771 65056798 -84460239 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1081 1057 108 134 0 chr6 65056857 65057014 -84460023 - B2_Mm1t SINE B2 -14 179 2 1 1081 303 93 0 0 chr6 65057018 65057061 -84459976 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1081 1442 77 50 0 chr6 65057387 65057569 -84459468 + B2_Mm2 SINE B2 1 191 -4 1 1081 29 0 0 0 chr6 65058191 65058220 -84458817 + AT_rich Low_complexity Low_complexity 1 29 0 1 1081 1209 69 0 14 chr6 65058926 65059073 -84457964 - B1_Mus2 SINE Alu -2 145 1 1 1081 326 269 26 0 chr6 65059178 65059256 -84457781 - ID4 SINE ID -2 81 2 1 1081 1620 310 14 16 chr6 65059287 65059773 -84457264 + Lx5 LINE L1 6506 6990 -60 1 1081 347 341 21 43 chr6 65060798 65060939 -84456098 + B1F SINE Alu 9 146 -3 1 1081 1314 209 74 77 chr6 65061154 65061226 -84455811 - ORR1C2 LTR MaLR -5 379 315 1 1081 805 219 7 33 chr6 65061226 65061377 -84455660 + B1_Mm SINE Alu 1 147 0 1 1081 1314 209 74 77 chr6 65061377 65061682 -84455355 - ORR1C2 LTR MaLR -70 314 3 1 1081 346 342 85 42 chr6 65062946 65063111 -84453926 + MER5A DNA MER1_type 18 189 0 1 1081 873 246 19 37 chr6 65063431 65063646 -84453391 - B3 SINE B2 -5 211 1 1 1081 240 35 0 0 chr6 65064657 65064686 -84452351 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1081 22 70 0 0 chr6 65065547 65065590 -84451447 + AT_rich Low_complexity Low_complexity 1 43 0 1 1081 471 182 233 52 chr6 65066243 65066359 -84450678 - B1_Mus1 SINE Alu 0 148 12 1 1081 1152 89 7 0 chr6 65066707 65066853 -84450184 + B1_Mus1 SINE Alu 1 147 -1 1 1081 21 0 0 0 chr6 65067590 65067611 -84449426 + AT_rich Low_complexity Low_complexity 1 21 0 1 1081 526 314 0 31 chr6 65067611 65067772 -84449265 - RSINE1 SINE B4 -6 159 4 1 1081 376 265 224 32 chr6 65068242 65068816 -84448221 - L1MC1 LINE L1 -423 5910 5211 1 1081 212 0 36 0 chr6 65068827 65068855 -84448182 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1081 1181 68 14 0 chr6 65068889 65069035 -84448002 - B1_Mus1 SINE Alu 0 148 1 1 1081 1166 61 48 12 chr6 65069037 65069202 -84447835 - B2_Mm2 SINE B2 -22 173 3 1 1081 422 278 153 41 chr6 65069280 65069665 -84447372 - Tigger6a DNA MER2_type -551 532 60 1 1081 239 330 38 28 chr6 65071102 65071208 -84445829 - MIRm SINE MIR -3 273 167 1 1081 336 285 139 41 chr6 65072038 65072305 -84444732 - L1MC5 LINE L1 -1027 6934 6642 1 1081 1449 110 16 0 chr6 65072338 65072529 -84444508 - B2_Mm2 SINE B2 0 195 2 1 1081 207 0 0 0 chr6 65072723 65072746 -84444291 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1 1081 1121 239 7 66 chr6 65072772 65073076 -84443961 + B4 SINE B4 1 286 -6 1 1081 387 237 155 0 chr6 65073367 65073464 -84443573 - PB1D7 SINE Alu -8 112 1 1 1081 424 273 11 120 chr6 65073804 65073987 -84443050 - RSINE1 SINE B4 0 165 3 1 1081 207 174 21 21 chr6 65074078 65074125 -84442912 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1081 2093 138 97 3 chr6 65074511 65074861 -84442176 + ORR1B1 LTR MaLR 1 383 -11 1 1081 414 0 0 0 chr6 65075495 65075541 -84441496 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1081 399 92 0 0 chr6 65075605 65075670 -84441367 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1081 367 199 75 5 chr6 65076122 65076219 -84440818 + PB1D10 SINE Alu 7 109 -11 1 1081 543 53 0 0 chr6 65077034 65077109 -84439928 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1081 180 0 0 0 chr6 65077297 65077317 -84439720 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1081 889 339 7 0 chr6 65077486 65077772 -84439265 + B4A SINE B4 3 290 -2 1 1081 295 256 11 78 chr6 65077875 65078009 -84439028 - B1F2 SINE Alu -1 148 28 1 1081 289 56 0 0 chr6 65077982 65078018 -84439019 + U2 snRNA snRNA 1 36 -152 1 1081 281 196 0 0 chr6 65078020 65078066 -84438971 - PB1D9 SINE Alu -56 64 19 1 1081 1283 206 99 22 chr6 65078220 65078532 -84438505 - MTD LTR MaLR -8 411 76 1 1081 731 261 66 148 chr6 65079088 65079266 -84437771 + ORR1E LTR MaLR 1 138 -221 1 1081 1006 47 147 0 chr6 65079266 65079395 -84437642 - B1_Mus1 SINE Alu 0 148 1 1 1081 731 261 66 148 chr6 65079395 65079548 -84437489 + ORR1E LTR MaLR 139 305 -54 1 1081 530 187 19 9 chr6 65079584 65079692 -84437345 - MTD LTR MaLR -302 119 11 1 1081 2910 64 12 0 chr6 65079912 65080254 -84436783 + ORR1A1 LTR MaLR 1 346 0 1 1081 324 327 59 0 chr6 65080844 65080945 -84436092 + ID_B1 SINE B4 87 193 -31 1 1081 1414 100 5 5 chr6 65081022 65081213 -84435824 + B2_Mm1t SINE B2 1 191 -2 1 1081 360 59 0 0 chr6 65081349 65081400 -84435637 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 1081 532 244 27 115 chr6 65081411 65081559 -84435478 + RSINE1 SINE B4 8 142 -23 1 1081 787 263 20 20 chr6 65081689 65081891 -84435146 + B3 SINE B2 5 206 -10 1 1081 587 237 105 26 chr6 65082843 65083034 -84434003 - B3 SINE B2 -10 206 1 1 1081 843 210 71 48 chr6 65084469 65084679 -84432358 - B3 SINE B2 -1 215 1 1 1081 432 258 159 16 chr6 65085285 65085411 -84431626 + B1F1 SINE Alu 6 149 0 1 1081 655 269 63 67 chr6 65085995 65086218 -84430819 + ID_B1 SINE B4 3 224 0 1 1081 847 212 54 25 chr6 65086311 65086514 -84430523 - B3 SINE B2 -1 215 7 1 1081 26 50 0 0 chr6 65086778 65086818 -84430219 + AT_rich Low_complexity Low_complexity 1 40 0 1 1081 181 321 34 45 chr6 65087830 65087918 -84429119 - MIRb SINE MIR -92 176 90 1 1081 368 293 64 72 chr6 65088908 65089033 -84428004 + B4 SINE B4 1 124 -168 1 1081 356 321 0 35 chr6 65089131 65089244 -84427793 + RSINE1 SINE B4 26 134 -31 1 1081 387 0 0 0 chr6 65089251 65089294 -84427743 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1081 24 0 0 0 chr6 65090016 65090040 -84426997 + AT_rich Low_complexity Low_complexity 1 24 0 1 1081 219 103 0 0 chr6 65090202 65090241 -84426796 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1081 225 204 105 95 chr6 65090255 65090445 -84426592 - RMER17C LTR ERVK -92 318 127 1 1081 441 255 116 62 chr6 65090562 65090821 -84426216 + Lx8 LINE L1 7199 7471 -2 1 1081 406 295 75 85 chr6 65091547 65091747 -84425290 + B3A SINE B2 1 198 0 1 1081 264 59 0 0 chr6 65091801 65091835 -84425202 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1081 450 193 102 83 chr6 65091980 65092144 -84424893 - RMER1C Other Other 0 1342 1199 1 1081 660 250 22 0 chr6 65092561 65092697 -84424340 + B1_Mur2 SINE Alu 1 139 -10 1 1081 578 60 0 12 chr6 65094237 65094321 -84422716 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1081 3459 51 2 19 chr6 65095644 65096067 -84420970 - L1Md_F2 LINE L1 0 6582 6167 1 1081 46 33 0 0 chr6 65096164 65096224 -84420813 + AT_rich Low_complexity Low_complexity 1 60 0 1 1081 1576 303 49 13 chr6 65097659 65098187 -84418850 - Lx8 LINE L1 -122 7351 6805 1 1081 1430 141 0 9 chr6 65098218 65098433 -84418604 - ORR1B1 LTR MaLR -4 325 113 1 1081 3292 167 47 76 chr6 65098431 65099097 -84417940 - ORR1B1-int LTR MaLR -100 1863 1007 1 1081 1363 27 0 0 chr6 65099097 65099244 -84417793 - B1_Mm SINE Alu 0 147 1 1 1081 3292 177 45 113 chr6 65099244 65099756 -84417281 - ORR1B1-int LTR MaLR -704 1259 720 1 1081 5233 57 0 0 chr6 65099756 65100353 -84416684 + L1_Mus1 LINE L1 5971 6567 0 1 1081 1944 256 106 148 chr6 65100353 65100381 -84416656 - ORR1B1-int LTR MaLR -1196 767 735 1 1081 456 77 0 0 chr6 65100381 65100446 -84416591 + L1_Mus2 LINE L1 6501 6565 -1 1 1081 1944 256 106 148 chr6 65100446 65100798 -84416239 - ORR1B1-int LTR MaLR -1229 734 369 1 1081 1935 152 44 49 chr6 65101552 65101940 -84415097 - ORR1B1-int LTR MaLR -1577 386 1 1 1081 1755 169 13 89 chr6 65101940 65102005 -84415032 - ORR1B1 LTR MaLR 0 394 353 1 1081 1229 82 0 0 chr6 65102005 65102151 -84414886 - B1_Mus2 SINE Alu 0 147 2 1 1081 1755 169 13 89 chr6 65102151 65102468 -84414569 - ORR1B1 LTR MaLR -42 352 41 1 1081 1398 269 97 2 chr6 65102475 65102908 -84414129 - Lx8 LINE L1 -701 6772 6299 1 1081 563 193 45 98 chr6 65102934 65103066 -84413971 + B1_Mus1 SINE Alu 24 148 0 1 1081 189 0 0 0 chr6 65103070 65103091 -84413946 + (CCAA)n Simple_repeat Simple_repeat 2 22 0 1 1081 303 257 68 0 chr6 65103094 65103168 -84413869 - Lx8 LINE L1 -1167 6306 6228 1 1081 2998 248 41 18 chr6 65103216 65104166 -84412871 - Lx8 LINE L1 -1622 6074 5105 1 1081 342 0 0 0 chr6 65104273 65104311 -84412726 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1081 882 264 111 76 chr6 65104454 65104888 -84412149 - RLTR42-int LTR ERVK -625 4897 4449 1 1081 696 165 23 0 chr6 65105966 65106142 -84410895 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1081 349 289 57 38 chr6 65106463 65106672 -84410365 - RLTR42-int LTR ERVK -1056 4466 4254 1 1081 481 233 0 70 chr6 65106895 65107024 -84410013 - RLTR42-int LTR ERVK -1400 4122 4003 1 1081 1307 256 66 135 chr6 65107055 65107871 -84409166 - RMER1B Other Other -263 803 44 1 1081 221 283 0 32 chr6 65107985 65108047 -84408990 - B1F SINE Alu -88 61 2 1 1081 818 249 48 159 chr6 65108510 65108968 -84408069 - RLTR23 LTR ERV1 0 430 24 1 1081 360 43 0 0 chr6 65109125 65109171 -84407866 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1081 749 266 39 21 chr6 65109564 65109798 -84407239 - RLTR42-int LTR ERVK -4134 1388 1151 1 1081 1456 202 70 7 chr6 65110233 65110517 -84406520 - Lx4B LINE L1 -536 6522 6221 1 1081 1264 129 26 0 chr6 65110517 65110710 -84406327 + Lx4A LINE L1 6848 7045 -13 1 1081 2044 132 25 22 chr6 65110721 65111084 -84405953 - L1_Mur3 LINE L1 -4139 1741 1378 1 1081 531 252 8 0 chr6 65111101 65111228 -84405809 + Lx8 LINE L1 7005 7132 -341 1 1081 2734 171 123 22 chr6 65111215 65111801 -84405236 + Lx4A LINE L1 6411 7055 -3 1 1081 1092 107 0 0 chr6 65112324 65112464 -84404573 - B1_Mus1 SINE Alu -7 141 2 2 1081 385 238 0 0 chr6 65113151 65113235 -84403802 - L1_Mur3 LINE L1 -773 5107 5024 2 1081 276 30 0 0 chr6 65113304 65113337 -84403700 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2 1081 1121 277 68 3 chr6 65113337 65113674 -84403363 + L1_Mur3 LINE L1 4671 5029 -851 2 1081 422 195 0 58 chr6 65113702 65113789 -84403248 + ID4 SINE ID 2 83 0 2 1081 1437 30 5 0 chr6 65114507 65114912 -84402125 + (CA)n Simple_repeat Simple_repeat 1 406 0 2 1081 21 57 0 0 chr6 65115590 65115625 -84401412 + AT_rich Low_complexity Low_complexity 1 35 0 2 1081 228 302 71 8 chr6 65115647 65115774 -84401263 - L1MA4 LINE L1 -48 6252 6118 2 1081 277 173 0 0 chr6 65115878 65115930 -84401107 + L1M2 LINE L1 4516 4567 -1576 2 1081 3025 119 22 113 chr6 65115953 65116052 -84400985 - RLTR20A LTR ERVK 0 541 441 2 1081 489 17 0 0 chr6 65116052 65116110 -84400927 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1081 3025 119 22 113 chr6 65116110 65116605 -84400432 - RLTR20A LTR ERVK -101 440 2 2 1081 426 20 0 0 chr6 65116607 65116658 -84400379 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1081 306 199 54 42 chr6 65116694 65116842 -84400195 + (TG)n Simple_repeat Simple_repeat 1 149 0 2 1081 302 67 22 0 chr6 65116842 65116887 -84400150 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1081 306 199 54 42 chr6 65116887 65116906 -84400131 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1081 724 199 29 64 chr6 65116929 65117133 -84399904 + ORR1D2 LTR MaLR 174 370 0 2 1081 233 285 197 0 chr6 65117162 65117299 -84399738 - L1M4 LINE L1 -1007 5139 4976 2 1081 536 336 128 38 chr6 65117282 65117830 -84399207 - L1_Mur3 LINE L1 -109 5771 5175 2 1081 339 318 85 0 chr6 65118188 65118364 -84398673 - L1M2 LINE L1 -1135 5008 4818 2 1081 1746 147 73 62 chr6 65118440 65118780 -84398257 - ORR1B1 LTR MaLR 0 394 51 2 1081 1137 125 75 26 chr6 65118781 65118994 -84398043 - RMER19A LTR ERVK 0 902 487 2 1081 405 0 0 0 chr6 65118994 65119039 -84397998 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1081 431 287 9 0 chr6 65119039 65119154 -84397883 - L1M2 LINE L1 -1407 4736 4621 2 1081 563 295 71 0 chr6 65120316 65120526 -84396511 - L1M2 LINE L1 -1512 4631 4407 2 1081 2980 49 23 0 chr6 65120788 65121138 -84395899 - L1Md_F2 LINE L1 -13 6569 6212 2 1081 1322 296 92 23 chr6 65121145 65121349 -84395688 - L1M2 LINE L1 -1754 4389 4141 2 1081 3290 47 39 3 chr6 65121349 65121731 -84395306 + MTA_Mm LTR MaLR 1 396 0 2 1081 1322 296 92 23 chr6 65121731 65122124 -84394913 - L1M2 LINE L1 -2003 4140 3751 2 1081 345 278 181 9 chr6 65122341 65122457 -84394580 - ID_B1 SINE B4 -7 217 82 2 1081 758 223 147 11 chr6 65123174 65123364 -84393673 - B3 SINE B2 0 216 1 2 1081 242 232 18 18 chr6 65123638 65123695 -84393342 + ID4_ SINE ID 20 76 -7 2 1081 652 259 74 47 chr6 65123786 65124001 -84393036 + RLTR18 LTR ERVK 1 221 -395 2 1081 27 49 0 0 chr6 65124161 65124202 -84392835 + AT_rich Low_complexity Low_complexity 1 41 0 2 1081 572 158 30 0 chr6 65124203 65124304 -84392733 - MTC-int LTR MaLR -1153 105 2 2 1081 456 295 79 36 chr6 65124307 65124556 -84392481 - L1M2 LINE L1 -1306 4834 4571 2 1081 242 251 95 58 chr6 65124557 65124747 -84392290 + L1M2 LINE L1 2728 2924 -3219 2 1081 445 304 75 42 chr6 65124951 65125284 -84391753 - L1MB2 LINE L1 -15 6156 5813 2 1081 794 170 6 0 chr6 65126527 65126698 -84390339 + (CA)n Simple_repeat Simple_repeat 1 172 0 2 1081 785 262 47 0 chr6 65127472 65127663 -84389374 + B3 SINE B2 14 213 -3 2 1081 723 279 46 0 chr6 65127796 65128036 -84389001 + L1_Rod LINE L1 462 712 -6460 2 1081 6699 66 12 1 chr6 65128051 65128899 -84388138 - L1Md_F2 LINE L1 -12 6570 5714 2 1081 1806 172 31 7 chr6 65128896 65129417 -84387620 + L1_Mm LINE L1 4175 4475 -1402 2 1081 1144 300 58 83 chr6 65129607 65130076 -84386961 + MER88 LTR ERVL 3 459 -5 2 1081 414 294 239 12 chr6 65130489 65130823 -84386214 + LTR50 LTR ERVL 111 520 -275 2 1081 24 53 0 0 chr6 65130934 65130972 -84386065 + AT_rich Low_complexity Low_complexity 1 38 0 2 1081 35451 66 7 4 chr6 65130972 65132170 -84384867 - L1_Mus1 LINE L1 0 6567 5368 2 1081 1134 55 0 110 chr6 65132170 65132334 -84384703 - B1_Mm SINE Alu 0 147 2 2 1081 35451 89 14 12 chr6 65132334 65137684 -84379353 - L1_Mus1 LINE L1 -516 5367 1 2 1081 4390 188 51 16 chr6 65137690 65138618 -84378419 - L1Md_F LINE L1 -5473 1046 87 2 1081 2171 179 51 8 chr6 65139561 65139954 -84377083 - MTC LTR MaLR -11 410 1 2 1081 1263 76 0 0 chr6 65140250 65140422 -84376615 + (GA)n Simple_repeat Simple_repeat 1 172 0 2 1081 266 303 52 13 chr6 65140426 65140503 -84376534 - B3A SINE B2 -44 154 75 2 1081 271 304 62 25 chr6 65140544 65140625 -84376412 - B3A SINE B2 -95 103 20 2 1081 22 0 0 0 chr6 65140756 65140778 -84376259 + AT_rich Low_complexity Low_complexity 1 22 0 2 1081 326 278 22 0 chr6 65141176 65141266 -84375771 + MLT2D LTR ERVL 3 94 -320 2 1081 200 128 0 25 chr6 65141640 65141680 -84375357 + (CTAG)n Simple_repeat Simple_repeat 2 40 0 2 1081 24 32 0 0 chr6 65141834 65141865 -84375172 + AT_rich Low_complexity Low_complexity 1 31 0 2 1081 21 0 0 0 chr6 65141920 65141941 -84375096 + AT_rich Low_complexity Low_complexity 1 21 0 2 1082 1604 205 103 3 chr6 65143047 65143395 -84373642 - MTD LTR MaLR -8 411 29 2 1082 387 56 0 0 chr6 65143412 65143466 -84373571 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 2 1082 2066 245 144 124 chr6 65143718 65144733 -84372304 - Lx8 LINE L1 -20 7453 6419 2 1082 35529 40 3 2 chr6 65145761 65146940 -84370097 - L1Md_F2 LINE L1 -7 6575 5416 2 1082 1233 55 7 0 chr6 65146940 65147086 -84369951 - B1_Mm SINE Alu 0 147 1 2 1082 35529 82 7 10 chr6 65147086 65152068 -84364969 - L1Md_F2 LINE L1 -468 5415 219 2 1082 38760 30 0 1 chr6 65152420 65158900 -84358137 - L1Md_T LINE L1 0 6585 43 2 1082 954 110 0 0 chr6 65158928 65159064 -84357973 + B1_Mm SINE Alu 12 147 0 2 1082 219 69 0 0 chr6 65159064 65159093 -84357944 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1082 242 216 0 13 chr6 65160215 65160290 -84356747 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1082 468 0 0 0 chr6 65160479 65160531 -84356506 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 2 1082 428 358 22 0 chr6 65160612 65160746 -84356291 + ORR1E LTR MaLR 2 138 -221 2 1082 286 322 38 51 chr6 65161352 65161509 -84355528 + RLTR14 LTR ERV1 228 382 0 2 1082 326 222 16 0 chr6 65161540 65161603 -84355434 + RSINE1 SINE B4 58 121 -44 2 1082 275 0 29 0 chr6 65161625 65161660 -84355377 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1082 23 33 0 0 chr6 65161685 65161715 -84355322 + AT_rich Low_complexity Low_complexity 1 30 0 2 1082 3408 258 78 28 chr6 65161719 65163431 -84353606 - Lx4A LINE L1 -19 7677 5236 2 1082 21 71 0 0 chr6 65163432 65163474 -84353563 + AT_rich Low_complexity Low_complexity 1 42 0 2 1082 391 211 100 55 chr6 65164154 65164264 -84352773 - B1_Mur4 SINE Alu 0 150 36 2 1082 1154 121 23 0 chr6 65164741 65164915 -84352122 + URR1B DNA MER1_type 48 225 0 2 1082 450 0 0 0 chr6 65165092 65165142 -84351895 + (TTA)n Simple_repeat Simple_repeat 3 52 0 2 1082 33838 35 1 0 chr6 65165332 65171202 -84345835 + L1Md_T LINE L1 1 5589 -297 2 1082 9056 4 0 0 chr6 65171202 65172198 -84344839 + L1Md_T LINE L1 5590 6585 0 2 1082 17717 169 36 14 chr6 65173106 65176604 -84340433 - Lx3C LINE L1 -2 6974 3441 2 1082 1263 100 22 0 chr6 65176604 65176784 -84340253 - B2_Mm1t SINE B2 -9 184 1 2 1082 17717 170 45 20 chr6 65176784 65178275 -84338762 - Lx3C LINE L1 -2446 3440 1864 2 1082 27776 22 1 0 chr6 65178274 65181700 -84335337 + L1Md_T LINE L1 2160 5586 -297 2 1082 8310 38 0 1 chr6 65181700 65182697 -84334340 + L1Md_T LINE L1 5587 6582 0 2 1082 6453 154 48 12 chr6 65183139 65184416 -84332621 - MusHAL1 LINE L1 -3313 2573 1267 2 1082 1226 71 0 6 chr6 65184416 65184587 -84332450 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 2 1082 6453 161 94 11 chr6 65184587 65184652 -84332385 - MusHAL1 LINE L1 -2648 1267 1186 2 1082 879 169 0 0 chr6 65184654 65184826 -84332211 + CT-rich Low_complexity Low_complexity 2 173 0 2 1082 3984 132 41 14 chr6 65184840 65185468 -84331569 - Lx3A LINE L1 0 6981 6337 2 1082 1352 189 37 3 chr6 65185472 65185770 -84331267 - L1VL4 LINE L1 -5467 835 528 2 1082 360 327 24 100 chr6 65187417 65187428 -84329609 + B4 SINE B4 77 155 -137 2 1082 759 219 0 33 chr6 65187428 65187579 -84329458 + B1_Mur3 SINE Alu 2 147 -2 2 1082 370 238 101 58 chr6 65188164 65188302 -84328735 + Kanga2_a DNA Tc2 211 354 -534 2 1082 2754 202 166 85 chr6 65188404 65189200 -84327837 - RMER13A LTR ERVK 0 860 1 2 1082 349 356 54 32 chr6 65189697 65189883 -84327154 + MIR3 SINE MIR 10 199 -9 2 1082 23 0 0 0 chr6 65190197 65190220 -84326817 + AT_rich Low_complexity Low_complexity 1 23 0 2 1082 1885 234 76 36 chr6 65190651 65191153 -84325884 - RMER5 LTR ERV1 0 534 13 2 1082 3033 49 13 15 chr6 65191267 65191664 -84325373 - MTA_Mm LTR MaLR 0 396 1 2 1082 1075 242 35 39 chr6 65191922 65192206 -84324831 - ORR1D1 LTR MaLR -91 283 1 2 1082 7865 40 1 1 chr6 65193331 65194920 -84322117 - L1Md_F3 LINE L1 -15 6569 4980 2 1082 785 302 27 14 chr6 65194927 65195414 -84321623 + L1_Mur3 LINE L1 4156 4648 -1232 2 1082 2110 72 111 0 chr6 65195508 65195840 -84321197 - L1VL2 LINE L1 -1586 2029 1661 2 1082 5249 74 0 11 chr6 65195853 65196882 -84320155 - L1VL2 LINE L1 -2294 1321 304 2 1082 491 306 10 17 chr6 65196943 65197088 -84319949 - ID_B1 SINE B4 -63 229 85 2 1082 215 191 0 93 chr6 65197152 65197227 -84319810 + C-rich Low_complexity Low_complexity 2 69 0 2 1082 3415 46 0 2 chr6 65197705 65198122 -84318915 + L1Md_F2 LINE L1 6166 6581 -1 2 1082 291 54 0 0 chr6 65198192 65198229 -84318808 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1082 203 211 19 19 chr6 65198581 65198634 -84318403 + (CATA)n Simple_repeat Simple_repeat 4 56 0 2 1082 300 215 36 18 chr6 65198642 65198808 -84318229 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 2 1082 334 276 94 99 chr6 65198880 65198926 -84318111 - MLT1F2 LTR MaLR -330 230 185 2 1082 567 0 0 0 chr6 65198926 65198989 -84318048 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1082 334 276 94 99 chr6 65198989 65199123 -84317914 - MLT1F2 LTR MaLR -376 184 51 2 1082 4151 164 106 81 chr6 65199222 65200220 -84316817 + RLTR13D2 LTR ERVK 1 1023 0 3 1082 333 0 0 0 chr6 65200444 65200481 -84316556 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1082 422 211 39 45 chr6 65200515 65200694 -84316343 + (TATG)n Simple_repeat Simple_repeat 3 180 0 3 1082 356 243 22 56 chr6 65200712 65200891 -84316146 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 3 1082 253 233 76 22 chr6 65201239 65201331 -84315706 - L1M3e LINE L1 -6915 115 19 3 1082 186 316 111 0 chr6 65201819 65201936 -84315101 - MIR3 SINE MIR -3 205 76 3 1082 1783 238 9 85 chr6 65202050 65202498 -84314539 - MTD LTR MaLR -14 405 1 3 1082 243 103 0 0 chr6 65204104 65204143 -84312894 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1082 1020 204 15 25 chr6 65204268 65204464 -84312573 + B3 SINE B2 6 199 -17 3 1082 840 39 0 0 chr6 65204469 65204573 -84312464 + B1_Mm SINE Alu 39 142 -5 3 1082 255 245 61 160 chr6 65204471 65204602 -84312435 + B4A SINE B4 126 243 -49 3 1082 463 285 26 99 chr6 65204609 65204761 -84312276 + RSINE1 SINE B4 24 164 -1 3 1082 387 0 0 0 chr6 65204774 65204817 -84312220 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1082 243 161 0 0 chr6 65204836 65204892 -84312145 + CT-rich Low_complexity Low_complexity 1 56 0 3 1082 39574 5 0 0 chr6 65204998 65211574 -84305463 - L1Md_A LINE L1 0 6582 7 3 1082 250 335 41 99 chr6 65212833 65213005 -84304032 - MLT1H LTR MaLR -304 245 84 3 1082 580 338 0 13 chr6 65213180 65213339 -84303698 - B4A SINE B4 -129 163 7 3 1082 252 0 0 0 chr6 65213811 65213839 -84303198 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 3 1082 1018 199 71 5 chr6 65214406 65214603 -84302434 - B3 SINE B2 -6 210 1 3 1082 3094 231 57 58 chr6 65214617 65214749 -84302288 - RMER1B Other Other 0 1066 939 3 1082 288 0 0 0 chr6 65214749 65214781 -84302256 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1082 3094 239 60 59 chr6 65214781 65215651 -84301386 - RMER1B Other Other -128 938 164 3 1082 1845 195 41 6 chr6 65215779 65216145 -84300892 + RLTR30 LTR ERV1 1 379 0 3 1082 230 311 82 0 chr6 65216704 65216765 -84300272 - ID4 SINE ID -2 81 16 3 1082 525 16 0 0 chr6 65216765 65216827 -84300210 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1082 336 305 31 10 chr6 65217445 65217541 -84299496 + B4 SINE B4 26 123 -169 3 1082 1173 73 0 0 chr6 65217709 65217887 -84299150 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 1082 317 70 0 0 chr6 65218229 65218272 -84298765 - MT2A LTR ERVL -2 531 489 3 1082 708 89 0 0 chr6 65218278 65218379 -84298658 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 3 1082 396 0 0 0 chr6 65218655 65218699 -84298338 + (CATA)n Simple_repeat Simple_repeat 2 45 0 3 1082 606 289 9 28 chr6 65218715 65218929 -84298108 - L1M2 LINE L1 -596 5695 5486 3 1082 1074 110 0 0 chr6 65219005 65219151 -84297886 + B1_Mus1 SINE Alu 2 147 -1 3 1082 459 52 0 0 chr6 65219152 65219210 -84297827 + (TAAG)n Simple_repeat Simple_repeat 2 59 0 3 1082 410 280 9 27 chr6 65219667 65219777 -84297260 + RMER15 LTR ERVL 296 403 -172 3 1082 518 319 79 11 chr6 65219770 65219960 -84297077 - MTD LTR MaLR -199 220 18 3 1082 476 261 43 9 chr6 65220099 65220215 -84296822 + PB1D9 SINE Alu 1 120 0 3 1082 288 183 28 14 chr6 65220243 65220315 -84296722 + L1M2 LINE L1 5413 5485 -827 3 1082 204 125 0 0 chr6 65220371 65220403 -84296634 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 3 1082 542 54 14 0 chr6 65221739 65221813 -84295224 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 3 1082 936 160 13 7 chr6 65221906 65222215 -84294822 + CT-rich Low_complexity Low_complexity 1 311 0 3 1082 947 154 0 26 chr6 65222219 65222372 -84294665 - B1_Mur4 SINE Alu -1 149 1 3 1082 216 97 0 0 chr6 65222455 65222486 -84294551 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 3 1082 252 264 40 40 chr6 65222764 65222839 -84294198 + ID2 SINE ID 2 76 -7 3 1082 516 223 108 0 chr6 65223083 65223213 -84293824 - RLTR23 LTR ERV1 0 430 287 3 1082 358 205 69 46 chr6 65223387 65223474 -84293563 - RLTR23 LTR ERV1 -336 94 6 3 1082 375 253 132 0 chr6 65225106 65225189 -84291848 + PB1D10 SINE Alu 22 115 -2 3 1082 224 159 0 22 chr6 65225195 65225240 -84291797 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 1082 359 318 9 26 chr6 65225240 65225353 -84291684 + RSINE1 SINE B4 20 130 -35 3 1082 258 318 0 11 chr6 65225484 65225573 -84291464 - PB1D10 SINE Alu -16 101 14 3 1082 764 153 7 14 chr6 65225928 65226074 -84290963 + Lx LINE L1 6504 6648 -6 3 1082 261 139 0 0 chr6 65226076 65226119 -84290918 + (A)n Simple_repeat Simple_repeat 1 43 0 3 1082 1200 254 143 162 chr6 65226119 65226588 -84290449 - MT2A LTR ERVL -73 460 1 3 1082 3600 260 46 73 chr6 65227038 65228565 -84288472 + RMER1C Other Other 103 1342 0 3 1082 410 53 18 0 chr6 65229112 65229169 -84287868 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1082 1974 79 36 7 chr6 65230197 65230477 -84286560 - L1Md_F2 LINE L1 -6 6576 6289 3 1082 308 328 36 8 chr6 65230527 65230649 -84286388 + MIRb SINE MIR 17 141 -135 3 1082 915 276 157 43 chr6 65231819 65232099 -84284938 + MTE2a LTR MaLR 68 379 0 3 1082 276 319 21 49 chr6 65232281 65232423 -84284614 - L2c LINE L2 0 3387 3250 3 1082 550 279 115 4 chr6 65233430 65233700 -84283337 + L1MB7 LINE L1 5848 6147 -37 3 1082 242 200 30 15 chr6 65233864 65233930 -84283107 + GA-rich Low_complexity Low_complexity 2 68 0 3 1082 252 308 78 62 chr6 65234113 65234241 -84282796 - RMER4B LTR ERVK -109 476 347 3 1082 3431 332 36 40 chr6 65234293 65236381 -84280656 - RodERV21-int LTR ERV1 -193 4798 2718 3 1082 258 158 51 34 chr6 65236718 65236777 -84280260 - RodERV21-int LTR ERV1 -2657 4949 4890 3 1082 351 318 28 20 chr6 65237229 65237537 -84279500 - RodERV21-int LTR ERV1 -1987 5104 4978 3 1082 1778 45 0 0 chr6 65237883 65238103 -84278934 - L1Md_A LINE L1 0 6582 6363 3 1082 355 355 22 38 chr6 65238511 65239006 -84278031 - RodERV21-int LTR ERV1 -3017 4074 3588 3 1082 5477 266 20 31 chr6 65239124 65240754 -84276283 - RodERV21-int LTR ERV1 -2273 2718 1106 3 1082 835 287 30 53 chr6 65240822 65241183 -84275854 - RodERV21-int LTR ERV1 -3903 1088 736 3 1082 624 212 0 0 chr6 65242415 65242552 -84274485 + CT-rich Low_complexity Low_complexity 2 138 0 3 1082 915 91 106 0 chr6 65242555 65242687 -84274350 - B1_Mus1 SINE Alu -1 147 2 3 1082 492 244 45 38 chr6 65243122 65243254 -84273783 + B4A SINE B4 105 237 -55 3 1082 33633 41 4 0 chr6 65243262 65247726 -84269311 + L1Md_A LINE L1 1012 5589 -297 3 1082 8497 31 0 0 chr6 65247726 65248721 -84268316 + L1Md_A LINE L1 5590 6584 -1 3 1082 234 0 0 0 chr6 65248748 65248774 -84268263 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1082 4084 20 0 0 chr6 65248774 65249269 -84267768 + L1Md_A LINE L1 5092 5586 -297 3 1082 8497 31 0 0 chr6 65249269 65250264 -84266773 + L1Md_A LINE L1 5587 6581 -1 3 1082 234 0 0 0 chr6 65250291 65250317 -84266720 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1082 4084 20 0 0 chr6 65250317 65250812 -84266225 + L1Md_A LINE L1 5092 5586 -297 3 1082 8473 32 0 0 chr6 65250812 65251807 -84265230 + L1Md_A LINE L1 5587 6581 -1 3 1082 4094 18 0 0 chr6 65251850 65252345 -84264692 + L1Md_A LINE L1 5092 5586 -297 3 1082 8497 31 0 0 chr6 65252345 65253340 -84263697 + L1Md_A LINE L1 5587 6581 -1 3 1082 297 0 0 0 chr6 65253367 65253400 -84263637 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1082 4084 20 0 0 chr6 65253400 65253895 -84263142 + L1Md_A LINE L1 5092 5586 -297 3 1082 8497 31 0 0 chr6 65253895 65254890 -84262147 + L1Md_A LINE L1 5587 6581 -1 3 1082 351 0 0 0 chr6 65254917 65254956 -84262081 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1082 4084 20 0 0 chr6 65254956 65255451 -84261586 + L1Md_T LINE L1 5092 5586 -297 3 1082 8462 34 0 0 chr6 65255451 65256447 -84260590 + L1Md_T LINE L1 5587 6582 0 3 1082 389 333 44 8 chr6 65256566 65256917 -84260120 + L1M3 LINE L1 2388 2757 -3386 3 1082 1474 292 139 28 chr6 65257209 65258685 -84258352 + L1M3 LINE L1 3113 4764 -1379 3 1082 1567 186 95 49 chr6 65258685 65258869 -84258168 + ORR1C2 LTR MaLR 1 188 -196 3 1082 548 63 72 0 chr6 65258869 65258980 -84258057 + (TCTCTG)n Simple_repeat Simple_repeat 2 120 0 3 1082 1567 186 95 49 chr6 65258980 65259162 -84257875 + ORR1C2 LTR MaLR 189 384 0 3 1082 717 303 104 22 chr6 65259162 65259227 -84257810 + L1M3 LINE L1 4765 4829 -1314 3 1082 262 322 53 63 chr6 65259300 65259489 -84257548 - MLT1F2 LTR MaLR -349 211 25 3 1082 318 313 148 31 chr6 65259904 65260161 -84256876 - L1MEg LINE L1 -4466 1618 1332 3 1082 215 95 0 45 chr6 65260196 65260240 -84256797 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1082 652 284 65 45 chr6 65260247 65260496 -84256541 - B4 SINE B4 -30 262 5 3 1082 772 69 8 8 chr6 65261511 65261628 -84255409 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 3 1082 266 358 41 20 chr6 65262572 65262769 -84254268 - MER57A-int LTR ERV1 -1734 4453 4253 3 1082 726 266 87 50 chr6 65262787 65263306 -84253731 - MER57A-int LTR ERV1 -2162 4025 3488 3 1082 258 136 0 0 chr6 65263342 65263386 -84253651 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 1082 421 238 72 29 chr6 65263659 65263867 -84253170 - MER57A-int LTR ERV1 -2228 3128 2912 3 1082 289 350 20 0 chr6 65264661 65264761 -84252276 - MER5B DNA MER1_type -5 173 72 3 1082 1813 294 87 8 chr6 65264818 65265704 -84251333 - L1M2 LINE L1 -1102 5041 4086 3 1082 375 293 49 59 chr6 65265788 65265991 -84251046 + L1MA4 LINE L1 5071 5271 -872 3 1082 639 39 0 0 chr6 65266016 65266094 -84250943 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 3 1082 872 286 129 31 chr6 65266133 65266643 -84250394 + L1MA4 LINE L1 5338 5897 -403 3 1082 1832 73 8 8 chr6 65267660 65267957 -84249080 + L1_Mus3 LINE L1 6378 6638 0 3 1082 33857 35 0 0 chr6 65268363 65273573 -84243464 + L1Md_T LINE L1 283 5589 -297 3 135 9007 5 0 1 chr6 65273573 65274570 -84242467 + L1Md_T LINE L1 5590 6585 0 3 1083 234 0 0 0 chr6 65274590 65274616 -84242421 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1083 936 321 90 60 chr6 65275576 65276056 -84240981 - MLT1D LTR MaLR -7 498 5 3 1083 405 58 0 0 chr6 65276863 65276915 -84240122 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1083 21 0 0 0 chr6 65277598 65277619 -84239418 + AT_rich Low_complexity Low_complexity 1 21 0 3 1083 583 159 134 47 chr6 65277644 65277815 -84239222 - RMER17C-int LTR ERVK -446 2792 2607 3 1083 311 206 129 11 chr6 65277911 65278004 -84239033 + LSU-rRNA_Hsa rRNA rRNA 4201 4304 -731 3 1083 457 152 0 27 chr6 65278007 65278111 -84238926 - RMER17C-int LTR ERVK -2461 3676 3604 3 1083 281 127 191 0 chr6 65278972 65279035 -84238002 + B1_Mus2 SINE Alu 72 146 -1 3 1083 318 26 0 0 chr6 65279040 65279079 -84237958 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 3 1083 348 186 11 23 chr6 65279160 65279248 -84237789 - RMER17C-int LTR ERVK -887 2351 2265 3 1083 328 132 0 135 chr6 65279224 65279320 -84237717 - RLTR19-int LTR ERVK -2571 3566 3484 3 1083 1574 249 81 34 chr6 65279731 65280363 -84236674 - MYSERV6-int LTR ERVK -263 8696 8114 4 1083 192 143 0 0 chr6 65280424 65280466 -84236571 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1083 203 56 56 0 chr6 65281466 65281502 -84235535 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 4 1083 286 294 39 19 chr6 65282555 65282659 -84234378 - RodERV21-int LTR ERV1 -4788 203 98 4 1083 244 251 33 109 chr6 65282812 65283116 -84233921 - RMER17A2 LTR ERVK -404 502 222 4 1083 688 255 18 62 chr6 65283300 65283526 -84233511 - B3 SINE B2 0 216 1 4 1083 22 0 0 0 chr6 65283577 65283599 -84233438 + AT_rich Low_complexity Low_complexity 1 22 0 4 1083 532 314 73 23 chr6 65283606 65283867 -84233170 - Lx8 LINE L1 -72 7401 7128 4 1083 1016 187 0 16 chr6 65284108 65284293 -84232744 + MTC LTR MaLR 147 328 -93 4 1083 1693 182 39 53 chr6 65284295 65284654 -84232383 + ORR1B2 LTR MaLR 3 356 -11 4 1083 577 191 9 9 chr6 65284653 65284759 -84232278 + ORR1B2 LTR MaLR 316 421 0 4 1083 587 81 12 0 chr6 65285486 65285572 -84231465 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 4 1083 189 107 0 0 chr6 65286471 65286499 -84230538 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 1083 992 96 16 38 chr6 65286504 65286688 -84230349 - Lx3_Mus LINE L1 0 7009 6830 4 1083 1285 190 142 15 chr6 65288081 65288413 -84228624 - ORR1D1 LTR MaLR 0 374 1 4 1083 1778 240 164 4 chr6 65288797 65289274 -84227763 + RMER15 LTR ERVL 1 553 -22 4 1083 460 339 55 24 chr6 65289286 65289579 -84227458 - Lx8 LINE L1 -93 7380 7079 4 1083 253 318 28 0 chr6 65289922 65290029 -84227008 + LTR37A LTR ERV1 77 186 -240 4 1083 1928 242 96 19 chr6 65290768 65291503 -84225534 + Lx9 LINE L1 6854 7644 0 4 1083 321 337 11 0 chr6 65292133 65292222 -84224815 - RSINE1 SINE B4 -12 153 64 4 1083 28 0 0 0 chr6 65292255 65292283 -84224754 + AT_rich Low_complexity Low_complexity 1 28 0 4 1083 228 35 0 0 chr6 65292397 65292426 -84224611 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1083 2728 303 64 23 chr6 65292426 65293519 -84223518 - Lx8 LINE L1 -139 7334 6197 4 1083 1761 217 28 80 chr6 65293569 65294005 -84223032 + MTD LTR MaLR 1 413 -6 4 1083 807 323 64 23 chr6 65294124 65294727 -84222310 - Lx8 LINE L1 -289 6014 5329 4 1083 1055 189 46 0 chr6 65294735 65294931 -84222106 - B3 SINE B2 -8 208 4 4 1083 947 202 39 5 chr6 65295429 65295633 -84221404 - B3 SINE B2 -5 211 1 4 1083 543 217 5 39 chr6 65295697 65295876 -84221161 - L1M3 LINE L1 -1476 4664 4483 4 1083 23 33 0 0 chr6 65295935 65295965 -84221072 + AT_rich Low_complexity Low_complexity 1 30 0 4 1083 686 249 77 0 chr6 65296214 65296395 -84220642 - B3A SINE B2 -2 196 2 4 1083 714 282 18 46 chr6 65296443 65296662 -84220375 - B4 SINE B4 -66 226 14 4 1083 239 219 41 0 chr6 65296687 65296760 -84220277 + L1M2 LINE L1 3372 3447 -2696 4 1083 506 266 79 16 chr6 65297182 65297434 -84219603 - L1MA6 LINE L1 -4 6296 6029 4 1083 354 263 66 44 chr6 65297431 65297614 -84219423 + L1M2 LINE L1 2727 2913 -3230 4 1083 263 83 0 0 chr6 65299301 65299337 -84217700 - ORR1A3 LTR MaLR -8 318 283 4 1083 2503 68 61 0 chr6 65299409 65299735 -84217302 + ORR1A1 LTR MaLR 1 346 0 4 1083 261 0 0 0 chr6 65299802 65299831 -84217206 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 4 1083 227 402 54 27 chr6 65299842 65300103 -84216934 - L2 LINE L2 -527 2892 2625 4 1083 432 322 66 52 chr6 65300114 65300327 -84216710 + MLT1D LTR MaLR 1 216 -289 4 1083 815 253 36 16 chr6 65300806 65300999 -84216038 - B3 SINE B2 -9 207 11 4 1083 22 35 0 0 chr6 65301165 65301194 -84215843 + AT_rich Low_complexity Low_complexity 1 29 0 4 1083 238 237 162 20 chr6 65301367 65301466 -84215571 - L1MA4A LINE L1 -42 6258 6146 4 1083 213 39 0 0 chr6 65301908 65301934 -84215103 + (CAG)n Simple_repeat Simple_repeat 1 26 0 4 1083 5242 95 7 10 chr6 65302014 65302782 -84214255 - L1_Mus3 LINE L1 -2 6636 5872 4 1083 2651 50 0 15 chr6 65302982 65303325 -84213712 - L1Md_F3 LINE L1 -4 6580 6243 4 1083 6307 94 9 3 chr6 65303326 65304248 -84212789 - L1_Mm LINE L1 -34 5849 4923 4 1083 18829 85 12 5 chr6 65304245 65307606 -84209431 - L1Md_F2 LINE L1 -197 6385 2996 4 1083 5869 101 23 18 chr6 65307613 65308776 -84208261 - L1VL1 LINE L1 -2337 1361 193 4 1083 825 60 0 0 chr6 65309961 65310077 -84206960 + (CA)n Simple_repeat Simple_repeat 2 117 0 4 1083 239 287 116 0 chr6 65310135 65310264 -84206773 - L1MA4A LINE L1 -367 5936 5793 4 1083 244 200 0 0 chr6 65310259 65310304 -84206733 - Lx8 LINE L1 -1741 5732 5688 4 1083 227 191 0 0 chr6 65310377 65310424 -84206613 + CT-rich Low_complexity Low_complexity 1 47 0 4 1083 312 292 111 37 chr6 65310424 65310559 -84206478 - HAL1-3A_ME LINE L1 -420 2438 2294 4 1083 4665 86 12 15 chr6 65310567 65311225 -84205812 - L1_Mus4 LINE L1 -7 6629 5974 4 1083 3496 55 4 26 chr6 65311225 65311717 -84205320 + L1_Mm LINE L1 3763 4243 -1640 4 1083 341 311 93 0 chr6 65312230 65312391 -84204646 + MER5B DNA MER1_type 2 177 -1 4 1083 26 0 0 0 chr6 65312420 65312446 -84204591 + AT_rich Low_complexity Low_complexity 1 26 0 4 1083 278 354 85 16 chr6 65313290 65313419 -84203618 - Tigger5 DNA MER2_type -2162 244 107 4 1083 316 298 70 62 chr6 65314370 65314499 -84202538 + RSINE1 SINE B4 17 146 -19 4 1083 192 130 74 0 chr6 65315122 65315176 -84201861 + CT-rich Low_complexity Low_complexity 4 61 0 4 1083 1189 261 35 70 chr6 65315185 65315559 -84201478 - RLTR18B LTR ERVK -9 503 143 4 1083 1060 224 50 60 chr6 65315574 65315855 -84201182 - RLTR18 LTR ERVK -334 282 5 4 1083 1116 299 29 23 chr6 65315879 65316263 -84200774 + Lx8 LINE L1 6132 6517 -956 4 1083 597 195 9 25 chr6 65316281 65316740 -84200297 + GA-rich Low_complexity Low_complexity 1 451 0 4 1083 222 331 122 16 chr6 65317134 65317257 -84199780 + L4 LINE RTE 1355 1490 -539 4 1083 994 269 62 48 chr6 65317257 65317530 -84199507 + ORR1E LTR MaLR 1 277 -82 4 1083 227 355 83 78 chr6 65317709 65317889 -84199148 + L4 LINE RTE 1641 1821 -208 4 1083 908 273 88 56 chr6 65318013 65318386 -84198651 + RMER15 LTR ERVL 189 573 -2 4 1083 198 0 0 0 chr6 65318849 65318871 -84198166 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1083 584 278 91 4 chr6 65319568 65319832 -84197205 - L1M4 LINE L1 -1596 4550 4264 4 1083 180 0 0 0 chr6 65320024 65320044 -84196993 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1083 306 0 0 0 chr6 65320044 65320077 -84196960 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1083 1505 217 74 14 chr6 65322448 65322799 -84194238 - ORR1D1 LTR MaLR 0 374 3 4 1083 694 178 230 0 chr6 65323391 65323565 -84193472 - B3 SINE B2 0 216 3 4 1083 180 0 0 0 chr6 65323745 65323765 -84193272 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1083 552 259 0 18 chr6 65323940 65324050 -84192987 - B1_Mur4 SINE Alu -39 111 4 4 1083 204 67 0 0 chr6 65324319 65324349 -84192688 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 4 1083 183 114 0 0 chr6 65325284 65325319 -84191718 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1083 371 326 66 50 chr6 65325731 65325912 -84191125 - MER58B DNA MER1_type 0 341 158 4 1083 405 0 0 0 chr6 65326228 65326273 -84190764 + (TATG)n Simple_repeat Simple_repeat 2 46 0 4 1083 737 163 7 62 chr6 65326278 65326422 -84190615 - B1_Mur4 SINE Alu -2 148 13 4 1083 460 250 19 106 chr6 65326422 65326439 -84190598 - ID_B1 SINE B4 -2 222 76 4 1083 930 226 50 0 chr6 65326768 65326967 -84190070 + B3 SINE B2 7 215 -1 4 1083 362 267 43 22 chr6 65326985 65327123 -84189914 + L1MDa LINE L1 1571 1711 -4922 4 1083 254 314 58 45 chr6 65327639 65327862 -84189175 + L1MDa LINE L1 1824 2049 -4584 4 1083 215 268 10 0 chr6 65327977 65328074 -84188963 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 1083 464 281 71 26 chr6 65328077 65328271 -84188766 + L1MDa LINE L1 2017 2218 -4415 4 1083 3455 28 2 0 chr6 65328271 65328666 -84188371 - MTA_Mm LTR MaLR 0 396 1 4 1083 464 281 71 26 chr6 65328666 65328782 -84188255 + L1MDa LINE L1 2219 2341 -4292 4 1083 2052 113 98 17 chr6 65328861 65329220 -84187817 - Lx2B LINE L1 0 7000 6613 4 1083 1619 220 88 11 chr6 65329727 65330081 -84186956 - MTD LTR MaLR -28 391 11 4 1083 194 0 0 37 chr6 65330102 65330129 -84186908 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 4 1083 319 266 71 0 chr6 65330180 65330293 -84186744 + L1MD1 LINE L1 5657 5777 -582 4 1083 320 328 143 38 chr6 65330374 65330593 -84186444 + L1MD1 LINE L1 5842 6086 -156 4 1083 198 0 0 0 chr6 65330593 65330615 -84186422 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1083 363 23 0 0 chr6 65330615 65330658 -84186379 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1083 320 328 143 38 chr6 65330658 65330675 -84186362 + L1MD1 LINE L1 6087 6102 -140 4 1083 223 200 44 0 chr6 65331170 65331215 -84185822 + (CGCGG)n Simple_repeat Simple_repeat 5 51 0 4 1083 249 269 51 51 chr6 65333300 65333398 -84183639 + PB1D10 SINE Alu 12 109 -8 4 1083 189 246 35 0 chr6 65333871 65333928 -84183109 - L2c LINE L2 -222 3165 3107 4 1083 1286 237 51 3 chr6 65334482 65334816 -84182221 - MTD LTR MaLR 0 419 70 4 1083 3136 11 40 0 chr6 65334820 65335173 -84181864 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1083 56761 22 17 2 chr6 65335173 65341548 -84175489 - IAPEz-int LTR ERVK 0 6481 8 4 1083 3136 11 40 0 chr6 65341548 65341901 -84175136 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1083 1279 270 39 6 chr6 65341901 65342258 -84174779 - MTD LTR MaLR -41 378 10 4 1083 264 280 40 13 chr6 65342520 65342596 -84174441 + MER63D DNA AcHobo 307 384 -677 4 1083 384 144 144 0 chr6 65343782 65343872 -84173165 + L1_Mus3 LINE L1 6532 6634 -4 4 1083 1035 92 42 0 chr6 65344585 65344727 -84172310 - B1_Mus1 SINE Alu 0 148 1 4 1083 285 146 0 0 chr6 65344986 65345034 -84172003 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1083 191 375 23 0 chr6 65347001 65347089 -84169948 + MIRb SINE MIR 4 93 -175 4 1083 676 225 29 0 chr6 65347328 65347466 -84169571 + B3A SINE B2 1 142 -56 4 1083 285 29 0 0 chr6 65347470 65347504 -84169533 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1083 358 281 0 43 chr6 65347565 65347658 -84169379 + B1F SINE Alu 1 89 -60 5 1083 301 313 156 26 chr6 65348070 65348262 -84168775 + ID_B1 SINE B4 7 223 -1 5 1083 618 272 66 10 chr6 65348275 65348472 -84168565 + B3 SINE B2 9 216 0 5 1083 1033 123 82 22 chr6 65349331 65349514 -84167523 - B2_Mm2 SINE B2 -1 194 1 5 1083 785 152 49 28 chr6 65349645 65349787 -84167250 + B1_Mus2 SINE Alu 2 146 -1 5 1083 192 232 174 53 chr6 65350735 65350867 -84166170 + L2a LINE L2 3275 3422 -4 5 1083 2726 84 27 3 chr6 65351981 65352352 -84164685 + L1_Mus4 LINE L1 6257 6636 0 5 1083 363 239 79 92 chr6 65352562 65352714 -84164323 - MTEa LTR MaLR -228 151 2 5 1083 227 239 132 99 chr6 65352863 65352984 -84164053 + MTEa LTR MaLR 1 125 -254 5 1083 290 350 52 39 chr6 65353082 65353311 -84163726 + MT2A LTR ERVL 230 461 -72 5 1083 410 226 156 88 chr6 65353322 65353371 -84163666 - MT2A LTR ERVL 0 533 460 5 1083 369 0 0 0 chr6 65353371 65353412 -84163625 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1083 410 226 156 88 chr6 65353412 65353477 -84163560 - MT2A LTR ERVL -74 459 395 5 1083 567 60 24 0 chr6 65353477 65353560 -84163477 - L1Md_F3 LINE L1 -2 6582 6498 5 1083 894 226 293 33 chr6 65353560 65353838 -84163199 - MT2A LTR ERVL -139 394 61 5 1083 1439 166 121 14 chr6 65353834 65354189 -84162848 + RMER5 LTR ERV1 142 534 0 5 1083 468 266 91 0 chr6 65354547 65354690 -84162347 - RMER20B LTR ERVK -291 336 181 5 1083 8117 217 33 4 chr6 65354890 65356549 -84160488 - MERVK26-int LTR ERVK -1 6918 5212 5 1083 301 192 39 0 chr6 65357032 65357110 -84159927 - RLTR19-int LTR ERVK -4789 1348 1268 5 1083 252 184 0 0 chr6 65357100 65357149 -84159888 - MurERV4-int LTR ERVK -1644 3616 3568 5 1083 1379 211 143 100 chr6 65358471 65358531 -84158506 - RLTR20A2 LTR ERVK 0 534 436 5 1083 270 0 0 0 chr6 65358531 65358561 -84158476 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1083 2675 116 69 2 chr6 65358561 65359012 -84158025 - RLTR20A2 LTR ERVK -98 480 1 5 1083 208 188 15 45 chr6 65359035 65359102 -84157935 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 1083 441 323 112 60 chr6 65359562 65359666 -84157371 + Lx8 LINE L1 6313 6406 -1067 5 1083 1105 70 0 40 chr6 65359666 65359814 -84157223 + B1_Mus1 SINE Alu 3 144 -4 5 1083 261 0 0 0 chr6 65359815 65359844 -84157193 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 5 1083 1558 310 152 53 chr6 65359844 65360790 -84156247 + Lx8 LINE L1 6407 7465 -8 5 1083 481 211 162 25 chr6 65361633 65361716 -84155321 - Lx7 LINE L1 -108 7588 7476 5 1083 180 0 0 0 chr6 65361716 65361736 -84155301 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1083 481 211 162 25 chr6 65361736 65361856 -84155181 - Lx7 LINE L1 -221 7475 7357 5 1083 192 143 0 0 chr6 65361865 65361907 -84155130 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 5 1083 642 126 0 0 chr6 65361908 65362011 -84155026 + (GA)n Simple_repeat Simple_repeat 2 104 0 5 1083 595 91 0 0 chr6 65362011 65362088 -84154949 + (GGGGA)n Simple_repeat Simple_repeat 5 81 0 5 1083 7530 199 52 33 chr6 65362088 65364792 -84152245 - Lx7 LINE L1 -330 7366 4625 5 1083 189 0 0 0 chr6 65364792 65364813 -84152224 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1083 7148 171 54 35 chr6 65364813 65365048 -84151989 - Lx7 LINE L1 -1256 4624 4373 5 1083 2769 141 50 32 chr6 65365046 65365224 -84151813 - Lx7 LINE L1 -2698 3182 3009 5 1083 258 32 0 0 chr6 65365224 65365255 -84151782 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 5 1083 2769 141 50 32 chr6 65365255 65365634 -84151403 - Lx7 LINE L1 -2872 3008 2617 5 1083 499 217 129 47 chr6 65365670 65365863 -84151174 - Lx7 LINE L1 -7004 724 516 5 1083 4453 64 5 2 chr6 65366078 65366644 -84150393 + L1_Mus3 LINE L1 6066 6633 -5 5 1083 225 0 0 0 chr6 65366673 65366698 -84150339 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 5 1083 267 31 0 0 chr6 65366711 65366743 -84150294 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 5 1083 12698 17 0 2 chr6 65367745 65369909 -84147128 - L1Md_T LINE L1 0 6582 4421 5 1083 254 284 0 0 chr6 65370442 65370509 -84146528 + G-rich Low_complexity Low_complexity 6 72 0 5 1083 10054 147 39 21 chr6 65370782 65373589 -84143448 + Lx5 LINE L1 4156 7031 -19 5 1083 300 53 0 0 chr6 65373589 65373627 -84143410 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 1083 602 105 9 0 chr6 65374290 65374395 -84142642 + (TC)n Simple_repeat Simple_repeat 1 106 0 5 1083 344 284 221 26 chr6 65374445 65374676 -84142361 - B4A SINE B4 -15 277 2 5 1083 897 198 55 25 chr6 65374709 65374911 -84142126 + B3 SINE B2 8 215 -1 5 1083 222 174 0 0 chr6 65374951 65374997 -84142040 + (CTTTG)n Simple_repeat Simple_repeat 2 47 0 5 1083 395 270 117 81 chr6 65375735 65375957 -84141080 + B4 SINE B4 2 231 -61 5 1083 1519 212 72 35 chr6 65376606 65376953 -84140084 + Lx5 LINE L1 6687 7046 -4 5 1083 1619 199 95 8 chr6 65377802 65378181 -84138856 - RMER5 LTR ERV1 0 534 123 5 1083 585 267 41 7 chr6 65379205 65379352 -84137685 + RSINE1 SINE B4 4 155 -10 5 1083 333 155 0 0 chr6 65379398 65379456 -84137581 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1083 1083 110 14 0 chr6 65380318 65380464 -84136573 + B1_Mus1 SINE Alu 1 148 0 5 1083 240 137 0 0 chr6 65380916 65380967 -84136070 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 5 1083 1023 9 0 0 chr6 65381118 65381234 -84135803 + (TC)n Simple_repeat Simple_repeat 1 116 0 5 1083 431 132 0 0 chr6 65381975 65382043 -84134994 + L1VL2 LINE L1 732 799 -5536 5 1083 209 314 0 29 chr6 65382938 65383043 -84133994 + GA-rich Low_complexity Low_complexity 2 103 0 5 1083 6240 67 22 11 chr6 65384003 65385031 -84132006 + L1VL2 LINE L1 785 1826 -1789 5 1083 264 258 0 0 chr6 65385189 65385251 -84131786 - PB1D10 SINE Alu -16 101 40 5 1083 24 85 0 0 chr6 65386089 65386148 -84130889 + AT_rich Low_complexity Low_complexity 1 59 0 5 1083 1803 221 42 31 chr6 65386352 65386735 -84130302 + Lx9 LINE L1 6343 6729 -915 5 1083 687 336 18 5 chr6 65386756 65386980 -84130057 - MLT2B1 LTR ERVL -293 227 1 5 1083 1169 193 14 5 chr6 65387348 65387567 -84129470 - URR1B DNA MER1_type -4 221 1 5 1083 875 239 102 59 chr6 65387567 65387988 -84129049 - MT2B LTR ERVL -16 585 1 5 1083 252 59 0 0 chr6 65388392 65388426 -84128611 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1083 453 331 24 0 chr6 65388430 65388557 -84128480 - B1F SINE Alu -7 142 13 5 1083 4417 70 3 3 chr6 65388795 65389401 -84127636 - L1_Mus1 LINE L1 -22 5861 5256 5 1083 5319 82 0 7 chr6 65389401 65390116 -84126921 + L1_Mus1 LINE L1 5858 6567 0 5 1083 8024 35 1 0 chr6 65390133 65391083 -84125954 + L1Md_T LINE L1 5630 6580 -2 5 1083 192 125 0 0 chr6 65391087 65391119 -84125918 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1083 358 141 0 0 chr6 65392554 65392625 -84124412 - L1Md_F3 LINE L1 -2 6582 6512 5 1083 592 277 130 27 chr6 65393713 65394204 -84122833 + L1M2 LINE L1 4311 4827 -1056 5 1083 29 0 0 0 chr6 65394204 65394233 -84122804 + AT_rich Low_complexity Low_complexity 1 29 0 5 1083 213 39 0 0 chr6 65394238 65394264 -84122773 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1083 573 15 0 0 chr6 65394264 65394329 -84122708 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1083 616 287 0 0 chr6 65394337 65394466 -84122571 - RSINE1 SINE B4 -35 130 2 5 1083 691 254 86 21 chr6 65394657 65395031 -84122006 + L1_Mur3 LINE L1 5168 5565 -315 5 1083 758 202 6 0 chr6 65395311 65395479 -84121558 + CT-rich Low_complexity Low_complexity 5 173 0 5 1083 535 108 0 21 chr6 65395460 65395555 -84121482 + (TCCCC)n Simple_repeat Simple_repeat 4 96 0 5 1083 701 309 37 5 chr6 65395984 65396149 -84120888 + B3A SINE B2 4 170 -28 5 1083 443 18 0 18 chr6 65396149 65396206 -84120831 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1083 701 309 37 5 chr6 65396206 65396229 -84120808 + B3A SINE B2 171 198 0 5 1083 913 270 10 0 chr6 65396318 65396522 -84120515 + B3 SINE B2 5 210 -6 5 1083 287 303 172 0 chr6 65397024 65397123 -84119914 + B4A SINE B4 1 116 -176 5 1083 25 31 0 0 chr6 65398012 65398044 -84118993 + AT_rich Low_complexity Low_complexity 1 32 0 5 1083 630 0 0 0 chr6 65398291 65398361 -84118676 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1083 414 0 0 0 chr6 65398361 65398406 -84118631 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1083 333 307 66 0 chr6 65398561 65398698 -84118339 + L1M4b LINE L1 1201 1346 -5988 5 1083 538 309 104 43 chr6 65398908 65399236 -84117801 + ORR1E LTR MaLR 8 355 -4 5 1083 945 60 0 0 chr6 65400064 65400197 -84116840 + (TC)n Simple_repeat Simple_repeat 2 134 0 5 1083 204 40 0 0 chr6 65400197 65400221 -84116816 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1083 241 244 0 0 chr6 65400480 65400525 -84116512 + U6 snRNA snRNA 1 45 -62 5 1083 515 236 95 28 chr6 65400887 65401066 -84115971 - Charlie2a DNA MER1_type -1205 1656 1466 5 1083 372 376 57 15 chr6 65401167 65401429 -84115608 - Charlie2a DNA MER1_type -2244 617 345 5 1083 266 284 47 24 chr6 65401617 65401702 -84115335 + ID4 SINE ID 13 99 -53 5 1083 4243 68 0 0 chr6 65404011 65404539 -84112498 + L1_Mus1 LINE L1 6040 6567 0 5 1084 1868 175 77 0 chr6 65405466 65405831 -84111206 - ORR1B1 LTR MaLR -1 393 1 5 1084 538 269 0 0 chr6 65406578 65406682 -84110355 + ID_B1 SINE B4 114 217 -7 5 1084 457 350 138 20 chr6 65409577 65409982 -84107055 - L1MCb LINE L1 -5006 1039 587 5 1084 253 302 57 25 chr6 65410113 65410235 -84106802 - L1MCb LINE L1 -6034 717 592 5 1084 1964 121 45 7 chr6 65410666 65410975 -84106062 - ORR1A4 LTR MaLR -8 321 1 5 1084 332 293 154 8 chr6 65411198 65411315 -84105722 - RSINE1 SINE B4 -28 137 4 5 1084 426 268 207 29 chr6 65412732 65413012 -84104025 + L1MD LINE L1 4813 5142 -1004 5 1084 268 282 82 44 chr6 65413014 65413196 -84103841 + L1MD LINE L1 5330 5518 -841 5 1084 420 322 42 0 chr6 65413422 65413661 -84103376 + L1MB2 LINE L1 5613 5861 -310 5 1084 241 181 0 53 chr6 65413722 65413798 -84103239 + CT-rich Low_complexity Low_complexity 2 73 0 5 1084 266 237 134 0 chr6 65413981 65414078 -84102959 + L1MB2 LINE L1 6057 6166 -17 5 1084 502 311 60 8 chr6 65414123 65414256 -84102781 + RSINE1 SINE B4 9 148 -17 5 1084 318 364 16 5 chr6 65414283 65414468 -84102569 + L1MD LINE L1 5595 5781 -578 5 1084 226 259 17 0 chr6 65414803 65414861 -84102176 - Lx8 LINE L1 -785 6688 6630 5 1084 3356 63 20 11 chr6 65416053 65416500 -84100537 - L1Md_F2 LINE L1 -11 6571 6121 5 1084 6049 97 38 11 chr6 65416518 65418210 -84098827 - L1Md_F LINE L1 -3746 2137 398 5 1084 1157 179 9 36 chr6 65418547 65418767 -84098270 - MTD LTR MaLR 0 419 206 6 1084 812 90 0 16 chr6 65418770 65418894 -84098143 + (TTTC)n Simple_repeat Simple_repeat 4 125 0 6 1084 372 43 0 0 chr6 65418894 65418939 -84098098 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 6 1084 3090 156 10 46 chr6 65418943 65419892 -84097145 - Lx3A LINE L1 -16 6993 6086 6 1084 328 247 0 13 chr6 65419919 65419997 -84097040 - MTD LTR MaLR -283 138 62 6 1084 1590 161 140 15 chr6 65421382 65421717 -84095320 + MTD LTR MaLR 25 401 -18 6 1084 623 241 106 35 chr6 65422361 65422559 -84094478 - Tigger5 DNA MER2_type -3 2403 2192 6 1084 714 24 0 0 chr6 65423360 65423444 -84093593 + (GA)n Simple_repeat Simple_repeat 2 85 0 6 1084 648 340 90 0 chr6 65424010 65424310 -84092727 + MER74B LTR ERVL 75 401 -221 6 1084 259 290 14 0 chr6 65424338 65424407 -84092630 + GA-rich Low_complexity Low_complexity 27 96 0 6 1084 198 0 0 0 chr6 65424488 65424510 -84092527 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1084 5301 230 44 30 chr6 65424536 65426372 -84090665 - Lx9 LINE L1 -484 7160 5260 6 1084 1844 55 25 4 chr6 65426404 65426642 -84090395 - L1Md_F2 LINE L1 -15 6567 6325 6 1084 4825 63 0 0 chr6 65426642 65427530 -84089507 - L1Md_F2 LINE L1 -452 6130 5243 6 1084 32334 61 4 1 chr6 65427530 65428858 -84088179 - L1Md_F2 LINE L1 -12 6570 5244 6 1084 180 111 0 0 chr6 65428858 65428885 -84088152 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 1084 32334 81 17 7 chr6 65428885 65433441 -84083596 - L1Md_F2 LINE L1 -640 5243 640 6 1084 6515 207 90 198 chr6 65433482 65434838 -84082199 - Lx9 LINE L1 -625 5222 3667 6 1084 180 0 0 0 chr6 65434838 65434858 -84082179 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1084 6515 207 90 198 chr6 65434858 65435514 -84081523 - Lx9 LINE L1 -2181 3666 3092 6 1084 783 188 0 29 chr6 65435514 65435651 -84081386 - B1_Mm SINE Alu -5 142 10 6 1084 1373 75 27 0 chr6 65435651 65435838 -84081199 + B2_Mm2 SINE B2 2 193 -2 6 1084 6515 207 90 198 chr6 65435838 65435886 -84081151 - Lx9 LINE L1 -2756 3091 3080 6 1084 387 0 0 0 chr6 65435886 65435929 -84081108 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1084 6515 211 86 152 chr6 65435929 65438921 -84078116 - Lx9 LINE L1 -2768 3079 466 6 1084 303 319 30 24 chr6 65438952 65439119 -84077918 - L1_Rod LINE L1 -6957 215 48 6 1084 675 301 16 31 chr6 65439135 65439327 -84077710 - B4 SINE B4 -72 220 32 6 1084 935 260 13 63 chr6 65439393 65439631 -84077406 + B4A SINE B4 3 228 -64 6 1084 1178 99 0 0 chr6 65440175 65440336 -84076701 + B2_Mm2 SINE B2 1 161 -34 6 1084 270 0 0 0 chr6 65440336 65440366 -84076671 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 6 1084 962 283 14 0 chr6 65440392 65440604 -84076433 + B3 SINE B2 1 215 -1 6 1084 306 376 125 34 chr6 65440604 65440656 -84076381 + B4A SINE B4 1 288 -4 6 1084 285 212 0 0 chr6 65440675 65440717 -84076320 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1084 515 43 14 0 chr6 65440717 65440787 -84076250 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 1084 285 212 0 0 chr6 65440787 65440829 -84076208 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1084 1226 78 0 0 chr6 65440851 65441018 -84076019 - Lx3_Mus LINE L1 -1267 4619 4453 6 1084 9087 77 10 1 chr6 65441005 65442488 -84074549 + Lx3_Mus LINE L1 4614 6114 -895 6 1084 772 123 146 25 chr6 65442683 65442841 -84074196 - ORR1B1 LTR MaLR -7 387 211 6 1084 322 49 197 0 chr6 65442834 65442895 -84074142 - ORR1B1 LTR MaLR -256 73 1 6 1084 295 359 43 43 chr6 65443162 65443325 -84073712 + MTD LTR MaLR 49 211 -208 6 1084 2880 110 0 21 chr6 65443349 65443786 -84073251 + Lx LINE L1 6225 6652 -2 6 1084 8439 75 3 7 chr6 65443792 65445744 -84071293 + L1Md_F2 LINE L1 4611 6557 -25 6 1084 5053 82 17 3 chr6 65445867 65446566 -84070471 + L1_Mus2 LINE L1 5858 6566 0 6 1084 511 206 113 57 chr6 65446574 65446740 -84070297 + MTD LTR MaLR 194 404 -15 6 1084 288 339 44 82 chr6 65446744 65446950 -84070087 - Zaphod DNA Tip100 -3393 638 441 6 1084 29 60 0 0 chr6 65447185 65447235 -84069802 + AT_rich Low_complexity Low_complexity 1 50 0 6 1084 228 209 30 0 chr6 65447244 65447311 -84069726 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1084 272 241 46 0 chr6 65447288 65447375 -84069662 + (CAGAGA)n Simple_repeat Simple_repeat 4 94 0 6 1084 282 282 25 37 chr6 65447380 65447461 -84069576 - ID_B1 SINE B4 -13 211 132 6 1084 251 342 191 9 chr6 65447461 65447495 -84069542 - B1F1 SINE Alu -13 136 1 6 1084 330 297 59 0 chr6 65447663 65447764 -84069273 + PB1 SINE Alu 5 111 -16 6 1084 258 105 0 0 chr6 65448603 65448641 -84068396 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1084 536 150 0 9 chr6 65449309 65449423 -84067614 + CT-rich Low_complexity Low_complexity 2 114 0 6 1084 806 293 42 54 chr6 65449549 65449902 -84067135 + Lx8 LINE L1 6383 6731 -742 6 1084 536 333 54 7 chr6 65449902 65450180 -84066857 + Lx8 LINE L1 6865 7155 -318 6 1084 405 0 0 0 chr6 65450236 65450281 -84066756 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1084 1260 91 11 0 chr6 65450282 65450457 -84066580 - B2_Mm1t SINE B2 -16 177 1 6 1084 279 322 92 0 chr6 65450510 65450597 -84066440 + Lx8 LINE L1 7182 7276 -197 6 1084 36159 17 0 7 chr6 65450772 65455965 -84061072 + L1Md_A LINE L1 436 5586 -297 6 1084 8700 20 1 0 chr6 65455965 65456960 -84060077 + L1Md_A LINE L1 5587 6582 0 6 1084 21 0 0 0 chr6 65457341 65457362 -84059675 + AT_rich Low_complexity Low_complexity 1 21 0 6 1084 662 249 77 6 chr6 65457419 65457589 -84059448 + B3A SINE B2 3 184 -14 6 1084 465 19 0 0 chr6 65457590 65457644 -84059393 + (TAAG)n Simple_repeat Simple_repeat 2 55 0 6 1084 4358 112 23 5 chr6 65457713 65458360 -84058677 - L1_Mus4 LINE L1 -6 6630 5972 6 1084 714 24 0 0 chr6 65460163 65460247 -84056790 + (CAAGA)n Simple_repeat Simple_repeat 3 86 0 6 1084 573 15 0 0 chr6 65461617 65461683 -84055354 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 1084 29 28 0 0 chr6 65461732 65461768 -84055269 + AT_rich Low_complexity Low_complexity 1 36 0 6 1084 1890 92 319 42 chr6 65462587 65462973 -84054064 + MT2_Mm LTR ERVL 1 493 0 6 1084 267 345 93 62 chr6 65462989 65463313 -84053724 + L2a LINE L2 1931 2264 -1155 6 1084 257 304 110 39 chr6 65463649 65463803 -84053234 + L2a LINE L2 2750 2914 -505 6 1084 2170 176 97 61 chr6 65463823 65464367 -84052670 - RMER15 LTR ERVL 0 575 12 6 1084 199 289 65 22 chr6 65464400 65464492 -84052545 + L2a LINE L2 3021 3116 -310 6 1084 258 32 0 0 chr6 65464614 65464645 -84052392 + (GCATG)n Simple_repeat Simple_repeat 2 32 0 6 1084 229 300 75 0 chr6 65464648 65464728 -84052309 + L2a LINE L2 3341 3426 0 6 1084 402 162 0 0 chr6 65465327 65465401 -84051636 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1084 450 36 0 0 chr6 65465488 65465544 -84051493 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1084 318 80 0 0 chr6 65467536 65467586 -84049451 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1084 276 30 0 0 chr6 65467680 65467713 -84049324 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 6 1084 503 31 0 15 chr6 65467716 65467782 -84049255 + (GAAA)n Simple_repeat Simple_repeat 1 65 0 6 1084 207 125 0 0 chr6 65467897 65467937 -84049100 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1084 250 268 176 49 chr6 65468873 65468975 -84048062 - PB1D10 SINE Alu -2 115 1 6 1084 851 246 38 19 chr6 65469817 65470028 -84047009 + B3 SINE B2 2 216 0 6 1084 30 0 0 0 chr6 65470049 65470079 -84046958 + AT_rich Low_complexity Low_complexity 1 30 0 6 1084 270 96 192 0 chr6 65471289 65471341 -84045696 - L1_Mur1 LINE L1 -867 5019 4958 6 1084 591 15 0 0 chr6 65473828 65473896 -84043141 + (TTC)n Simple_repeat Simple_repeat 2 69 0 6 1084 6656 46 0 1 chr6 65473900 65474710 -84042327 - L1_Mus2 LINE L1 0 6566 5758 6 1084 2338 218 69 37 chr6 65477425 65478171 -84038866 - Lx5 LINE L1 -1259 5791 4989 6 1084 253 309 163 6 chr6 65478214 65478380 -84038657 + Lx8 LINE L1 7282 7473 0 6 1084 369 317 35 14 chr6 65480601 65480742 -84036295 + B1F1 SINE Alu 5 148 -1 6 1084 210 71 0 0 chr6 65480862 65480890 -84036147 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1084 24 77 0 0 chr6 65481978 65482030 -84035007 + AT_rich Low_complexity Low_complexity 1 52 0 6 1084 390 21 0 0 chr6 65482530 65482577 -84034460 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1084 282 29 0 0 chr6 65482577 65482611 -84034426 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1084 288 236 28 0 chr6 65482613 65482685 -84034352 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1084 770 311 36 33 chr6 65482693 65482969 -84034068 - B4A SINE B4 -4 288 12 6 1084 242 292 233 29 chr6 65483019 65483298 -84033739 + Tigger13a DNA MER2_type 177 512 -259 6 1084 297 0 0 0 chr6 65483506 65483539 -84033498 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1084 455 161 148 11 chr6 65483544 65483632 -84033405 - B3 SINE B2 -94 122 23 6 1084 2930 43 0 3 chr6 65485433 65485786 -84031251 - L1_Mus1 LINE L1 0 6567 6216 6 1084 24 32 0 0 chr6 65485876 65485907 -84031130 + AT_rich Low_complexity Low_complexity 1 31 0 6 1084 246 62 0 0 chr6 65486179 65486211 -84030826 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 6 1084 299 264 59 74 chr6 65486756 65486794 -84030243 - RLTR25B LTR ERVK -455 573 533 6 1084 379 63 16 16 chr6 65486794 65486858 -84030179 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 6 1084 299 264 59 74 chr6 65486858 65486954 -84030083 - RLTR25B LTR ERVK -496 532 442 6 1084 893 110 0 30 chr6 65486954 65486989 -84030048 - B1_Mus1 SINE Alu -12 136 10 6 1084 522 256 28 89 chr6 65486989 65487038 -84029999 - ID_B1 SINE B4 -12 212 44 6 1084 21 0 0 0 chr6 65487370 65487391 -84029646 + AT_rich Low_complexity Low_complexity 1 21 0 6 1084 180 143 0 0 chr6 65487562 65487590 -84029447 - L3 LINE CR1 -2743 1746 1719 6 1084 207 176 0 0 chr6 65488838 65488872 -84028165 + (CAT)n Simple_repeat Simple_repeat 3 36 0 6 1084 219 69 0 0 chr6 65488901 65488930 -84028107 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1084 180 0 0 0 chr6 65488937 65488957 -84028080 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1084 328 294 39 111 chr6 65488957 65489110 -84027927 - RSINE1 SINE B4 -22 143 2 6 1084 427 312 45 0 chr6 65489523 65489635 -84027402 + B1F2 SINE Alu 1 117 -32 6 1084 446 296 18 36 chr6 65489973 65490138 -84026899 - RSINE1 SINE B4 0 165 4 6 1084 318 254 53 35 chr6 65491050 65491164 -84025873 + PB1D10 SINE Alu 1 116 -1 6 1084 1501 47 0 5 chr6 65491353 65491545 -84025492 - L1_Mus1 LINE L1 -403 6164 5974 6 1084 3050 56 38 0 chr6 65491545 65491940 -84025097 + L1_Mus1 LINE L1 6158 6567 0 6 1084 210 221 14 56 chr6 65492283 65492355 -84024682 + GA-rich Low_complexity Low_complexity 1 69 0 6 1084 396 0 0 0 chr6 65492826 65492870 -84024167 + (TTA)n Simple_repeat Simple_repeat 1 44 0 7 1084 579 149 0 0 chr6 65494113 65494234 -84022803 + (TC)n Simple_repeat Simple_repeat 2 122 0 7 1084 234 0 0 0 chr6 65495668 65495694 -84021343 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1084 582 267 12 36 chr6 65496029 65496196 -84020841 + RSINE1 SINE B4 3 165 0 7 1084 32 26 0 0 chr6 65496207 65496246 -84020791 + AT_rich Low_complexity Low_complexity 1 39 0 7 1084 1099 230 5 0 chr6 65496301 65496514 -84020523 - B3 SINE B2 -2 214 1 7 1084 403 359 62 14 chr6 65496580 65496789 -84020248 - L1M5 LINE L1 -318 5806 5588 7 1084 258 348 82 35 chr6 65497125 65497295 -84019742 + MTEb LTR MaLR 201 378 -1 7 1084 6396 194 42 10 chr6 65497676 65499895 -84017142 - Lx7 LINE L1 -976 6720 4429 7 1084 1935 204 32 77 chr6 65500115 65500673 -84016364 + Lx7 LINE L1 6932 7464 -232 1 1084 468 0 0 0 chr6 65500677 65500729 -84016308 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1084 7879 44 0 2 chr6 65500729 65502278 -84014759 - L1Md_F3 LINE L1 -24 6560 5013 3 1084 285 51 0 0 chr6 65502385 65502424 -84014613 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1084 662 214 234 0 chr6 65502450 65502604 -84014433 - B3 SINE B2 -24 192 3 5 1084 2288 195 22 66 chr6 65502616 65503193 -84013844 - Lx2B LINE L1 -1 6999 6448 6 1084 513 190 26 0 chr6 65503193 65503309 -84013728 + Lx7 LINE L1 7578 7696 0 1 1084 198 287 143 98 chr6 65503790 65503902 -84013135 + MIRb SINE MIR 95 211 -57 7 1084 283 283 69 29 chr6 65504448 65504550 -84012487 - MER21B LTR ERV1 -310 553 448 8 1084 309 309 64 16 chr6 65504640 65504765 -84012272 - MER21B LTR ERV1 -635 228 98 8 1084 28 0 0 0 chr6 65505032 65505060 -84011977 + AT_rich Low_complexity Low_complexity 1 28 0 9 1084 384 308 42 25 chr6 65505068 65505188 -84011849 - RSINE1 SINE B4 -17 148 27 1 1084 573 138 0 0 chr6 65505908 65506002 -84011035 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 1 1084 30854 86 7 27 chr6 65506427 65511910 -84005127 + L1Md_F2 LINE L1 234 5585 -298 1 1084 7453 72 16 8 chr6 65511910 65512898 -84004139 + L1Md_F2 LINE L1 5587 6582 0 1 1084 204 314 28 28 chr6 65513066 65513138 -84003899 - MIR SINE MIR -121 87 16 1 1084 204 40 0 0 chr6 65514570 65514595 -84002442 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1084 454 77 51 0 chr6 65515148 65515226 -84001811 + (TCCCC)n Simple_repeat Simple_repeat 2 83 0 1 1084 207 262 0 0 chr6 65515226 65515268 -84001769 + polypyrimidine Low_complexity Low_complexity 3 44 0 1 1084 369 0 0 0 chr6 65515291 65515332 -84001705 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1084 213 224 0 0 chr6 65515337 65515395 -84001642 + GA-rich Low_complexity Low_complexity 2 59 0 1 1084 289 255 95 67 chr6 65515744 65515849 -84001188 + RSINE1 SINE B4 1 108 -57 1 1084 227 331 46 0 chr6 65516116 65516209 -84000828 - ID4 SINE ID -54 98 2 2 1084 4224 138 14 1 chr6 65517401 65518127 -83998910 - L1_Mur2 LINE L1 -430 5447 4713 2 1084 410 214 79 18 chr6 65518174 65518288 -83998749 - MYSERV6-int LTR ERVK -292 8667 8547 2 1084 335 225 0 0 chr6 65518539 65518610 -83998427 - RLTR42-int LTR ERVK -3653 1869 1799 2 1084 306 227 0 29 chr6 65518720 65518788 -83998249 - ORR1B1 LTR MaLR -193 201 136 2 1084 26 50 0 0 chr6 65518856 65518896 -83998141 + AT_rich Low_complexity Low_complexity 1 40 0 2 1084 317 287 39 10 chr6 65519604 65519706 -83997331 + U6 snRNA snRNA 2 106 -1 2 1084 21 71 0 0 chr6 65519711 65519753 -83997284 + AT_rich Low_complexity Low_complexity 1 42 0 2 1084 309 279 116 0 chr6 65520313 65520399 -83996638 + RSINE1 SINE B4 16 111 -54 2 1084 21 0 0 0 chr6 65520400 65520421 -83996616 + AT_rich Low_complexity Low_complexity 1 21 0 2 1084 545 236 254 24 chr6 65520676 65520924 -83996113 - RMER15 LTR ERVL -270 305 1 3 1084 593 299 134 34 chr6 65521510 65521808 -83995229 - LTR37B LTR ERV1 -2 466 139 3 1084 521 272 105 60 chr6 65522190 65522456 -83994581 - B4 SINE B4 -14 278 1 3 1084 198 0 0 0 chr6 65522603 65522625 -83994412 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1084 201 383 127 7 chr6 65524210 65524352 -83992685 - L2 LINE L2 -356 3063 2905 3 1084 771 115 0 0 chr6 65525450 65525598 -83991439 + (TC)n Simple_repeat Simple_repeat 1 148 0 3 1084 405 0 0 0 chr6 65525599 65525644 -83991393 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1084 366 23 0 0 chr6 65526245 65526288 -83990749 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1084 465 133 0 0 chr6 65526303 65526378 -83990659 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1084 520 284 75 71 chr6 65526404 65526636 -83990401 + B4A SINE B4 3 250 -42 3 1084 378 0 0 0 chr6 65526740 65526782 -83990255 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1084 189 0 0 0 chr6 65526787 65526808 -83990229 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1084 288 0 0 0 chr6 65528031 65528063 -83988974 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1084 492 18 0 0 chr6 65528063 65528119 -83988918 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1084 632 228 88 0 chr6 65528908 65529044 -83987993 + B1_Mus1 SINE Alu 1 148 0 4 1084 871 155 203 0 chr6 65529587 65529774 -83987263 + URR1B DNA MER1_type 1 225 0 4 1084 294 245 128 0 chr6 65530015 65530109 -83986928 - B3A SINE B2 -67 131 26 4 1084 235 214 243 28 chr6 65530152 65530296 -83986741 - Lx7 LINE L1 -6 7690 7516 4 1084 433 232 10 0 chr6 65530428 65530527 -83986510 - Lx7 LINE L1 -605 7091 6992 4 1084 1116 247 73 0 chr6 65530558 65530858 -83986179 - Lx7 LINE L1 -1228 6468 6147 4 1084 8039 24 16 2 chr6 65530870 65531925 -83985112 - L1Md_T LINE L1 -1 6581 5519 4 1084 1053 169 138 26 chr6 65531920 65532171 -83984866 - Lx7 LINE L1 -1537 6159 5882 4 1084 387 83 0 0 chr6 65532171 65532231 -83984806 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1084 1053 170 118 40 chr6 65532231 65532339 -83984698 - Lx7 LINE L1 -1815 5881 5738 4 1084 2417 200 51 25 chr6 65532737 65533264 -83983773 - RLTR20A LTR ERVK 0 541 1 5 1084 716 296 6 25 chr6 65533516 65533679 -83983358 - RSINE1 SINE B4 0 165 6 5 1084 227 336 106 81 chr6 65533895 65534141 -83982896 - ORR1E LTR MaLR -10 349 98 5 1085 189 316 171 0 chr6 65536548 65536624 -83980413 - L2 LINE L2 -838 2581 2493 5 1085 249 219 11 58 chr6 65537185 65537272 -83979765 + (CATATA)n Simple_repeat Simple_repeat 5 87 0 5 1085 203 324 64 44 chr6 65537459 65537635 -83979402 - MIR SINE MIR -82 180 3 5 1085 208 62 0 94 chr6 65538076 65538129 -83978908 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 5 1085 1116 96 0 0 chr6 65538130 65538276 -83978761 - B1_Mus2 SINE Alu -1 146 1 5 1085 204 231 0 0 chr6 65539329 65539381 -83977656 + T-rich Low_complexity Low_complexity 1 52 0 5 1085 270 0 0 0 chr6 65539963 65539993 -83977044 + (TTA)n Simple_repeat Simple_repeat 2 31 0 5 1085 253 273 0 43 chr6 65541076 65541145 -83975892 - B3A SINE B2 -2 196 131 6 1085 500 316 13 26 chr6 65541099 65541255 -83975782 - RSINE1 SINE B4 -6 159 6 6 1085 240 338 60 48 chr6 65543254 65543269 -83973768 - ID SINE ID -139 85 1 6 1085 251 309 72 14 chr6 65543269 65543338 -83973699 - ID4 SINE ID -10 73 1 6 1085 909 239 19 23 chr6 65543932 65544146 -83972891 + B3 SINE B2 1 213 -3 6 1085 29 0 0 0 chr6 65544631 65544660 -83972377 + AT_rich Low_complexity Low_complexity 1 29 0 6 1085 191 203 65 48 chr6 65547321 65547383 -83969654 + L3 LINE CR1 889 951 -3538 6 1085 198 0 0 0 chr6 65547547 65547569 -83969468 + (GGGA)n Simple_repeat Simple_repeat 1 22 0 6 1085 332 281 28 117 chr6 65547665 65547810 -83969227 - B1F1 SINE Alu -14 135 4 6 1085 387 0 0 0 chr6 65548428 65548471 -83968566 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1085 262 0 26 26 chr6 65549378 65549417 -83967620 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 7 1085 516 16 0 0 chr6 65549417 65549478 -83967559 - B1_Mus2 SINE Alu -9 138 78 7 1085 186 43 0 0 chr6 65550191 65550214 -83966823 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1085 241 279 0 0 chr6 65550509 65550570 -83966467 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1085 501 224 11 22 chr6 65550571 65550841 -83966196 + (TATG)n Simple_repeat Simple_repeat 1 267 0 7 1085 234 123 17 50 chr6 65551402 65551462 -83965575 + (CAAA)n Simple_repeat Simple_repeat 1 58 0 7 1085 1009 198 36 39 chr6 65551504 65551836 -83965201 - RMER17C LTR ERVK 0 410 80 7 1085 970 194 31 39 chr6 65551819 65552181 -83964856 - RMER17C LTR ERVK -417 472 12 7 1085 393 216 20 77 chr6 65552206 65552325 -83964712 + B1F2 SINE Alu 2 114 -35 7 1085 290 267 56 72 chr6 65552221 65552346 -83964691 + B4 SINE B4 103 225 -67 7 1085 197 108 0 26 chr6 65553120 65553158 -83963879 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 7 1085 518 282 0 53 chr6 65553210 65553360 -83963677 - B3A SINE B2 0 198 57 8 1085 994 30 30 0 chr6 65553411 65553543 -83963494 + (TTTC)n Simple_repeat Simple_repeat 1 136 0 8 1085 24 67 0 0 chr6 65554099 65554144 -83962893 + AT_rich Low_complexity Low_complexity 1 45 0 8 1085 2200 160 164 0 chr6 65554220 65554670 -83962367 + RLTR28 LTR ERVL 1 524 0 8 1085 233 233 32 48 chr6 65555409 65555472 -83961565 + MER5A DNA MER1_type 72 133 -56 8 1085 224 77 0 25 chr6 65557486 65557526 -83959511 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1085 1132 62 14 0 chr6 65557531 65557676 -83959361 - B1_Mm SINE Alu 0 147 1 8 1085 661 23 23 0 chr6 65559147 65559234 -83957803 + (GA)n Simple_repeat Simple_repeat 1 89 0 8 1085 1469 209 143 37 chr6 65562218 65562596 -83954441 - MTC LTR MaLR -3 418 1 8 1085 398 20 0 19 chr6 65562684 65562736 -83954301 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1085 6765 21 2 0 chr6 65562902 65563726 -83953311 - L1_Mm LINE L1 -675 5208 4383 9 1085 1152 14 150 0 chr6 65563726 65563873 -83953164 + L1Md_A LINE L1 6413 6581 -1 9 1085 1641 260 35 5 chr6 65564030 65564424 -83952613 - MTD LTR MaLR 0 419 14 9 1085 390 336 39 0 chr6 65565147 65565275 -83951762 - ID_B1 SINE B4 -8 216 84 9 1085 1330 295 92 35 chr6 65565767 65566339 -83950698 - MTE2b-int LTR MaLR -416 1093 485 9 1085 909 279 150 21 chr6 65566329 65566655 -83950382 - MTE2b-int LTR MaLR -1211 369 2 9 1085 1158 264 66 25 chr6 65566655 65567017 -83950020 - MTE2b LTR MaLR 0 379 3 9 1085 298 324 32 4 chr6 65567623 65567777 -83949260 - MIRb SINE MIR -27 241 75 9 1085 457 175 41 0 chr6 65568569 65568666 -83948371 - MTE2a LTR MaLR 0 379 279 9 1085 598 218 19 164 chr6 65568690 65568898 -83948139 - MTE2a LTR MaLR -201 178 1 9 1085 3148 146 42 12 chr6 65568961 65569530 -83947507 - Lx4B LINE L1 -565 6493 5908 9 1085 819 279 19 8 chr6 65569534 65569798 -83947239 - L1MA4 LINE L1 -302 5998 5732 9 1085 21 0 0 0 chr6 65570180 65570201 -83946836 + AT_rich Low_complexity Low_complexity 1 21 0 9 1085 1252 307 65 15 chr6 65570384 65571140 -83945897 - L1_Mur3 LINE L1 -1892 3988 3195 1 1085 302 295 25 16 chr6 65571132 65571364 -83945673 - L1MC LINE L1 -3819 2324 2088 1 1085 24 0 0 0 chr6 65572345 65572369 -83944668 + AT_rich Low_complexity Low_complexity 1 24 0 1 1085 274 276 151 25 chr6 65573380 65573499 -83943538 - MLT1C LTR MaLR -34 433 300 1 1085 838 228 73 37 chr6 65573527 65573820 -83943217 - MTEa LTR MaLR -2 377 21 1 1085 267 364 62 54 chr6 65573844 65574085 -83942952 - MLT1C LTR MaLR -224 243 1 1 1085 375 329 32 51 chr6 65574085 65574242 -83942795 - MIR SINE MIR -25 237 84 1 1085 224 172 0 17 chr6 65574680 65574739 -83942298 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1085 1200 61 0 0 chr6 65574776 65574923 -83942114 + B1_Mus1 SINE Alu 2 148 0 1 1085 207 0 0 0 chr6 65575018 65575041 -83941996 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1085 242 125 0 20 chr6 65575041 65575090 -83941947 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1085 295 176 49 19 chr6 65575141 65575303 -83941734 + (TAGA)n Simple_repeat Simple_repeat 3 169 0 1 1085 185 191 51 26 chr6 65575365 65575521 -83941516 + (TAGA)n Simple_repeat Simple_repeat 3 162 0 1 1085 302 236 50 25 chr6 65575634 65575795 -83941242 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 1 1085 232 231 62 40 chr6 65576373 65576549 -83940488 - Lx9 LINE L1 -7 7637 7458 1 1085 1695 254 42 2 chr6 65576589 65577091 -83939946 - Lx9 LINE L1 -140 7504 6983 1 1085 23 33 0 0 chr6 65577178 65577208 -83939829 + AT_rich Low_complexity Low_complexity 1 30 0 1 1085 7074 89 21 6 chr6 65577234 65578414 -83938623 - L1_Mus4 LINE L1 0 6636 5447 1 1085 3875 52 0 0 chr6 65578420 65578886 -83938151 - L1_Mus1 LINE L1 -6 6561 6096 1 1085 3810 54 0 2 chr6 65578887 65579432 -83937605 + L1_Mus1 LINE L1 5534 6077 -490 1 1085 4884 133 26 11 chr6 65579425 65580335 -83936702 - L1_Mur2 LINE L1 -425 5452 4529 1 1085 342 250 9 94 chr6 65580543 65580559 -83936478 - PB1D10 SINE Alu 0 117 105 1 1085 276 53 0 0 chr6 65580559 65580597 -83936440 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1085 342 250 9 94 chr6 65580597 65580686 -83936351 - PB1D10 SINE Alu -13 104 21 1 1085 376 348 52 0 chr6 65581451 65581566 -83935471 + B1F1 SINE Alu 1 121 -28 1 1085 207 186 0 0 chr6 65583320 65583363 -83933674 + A-rich Low_complexity Low_complexity 1 43 0 1 1085 1767 238 46 5 chr6 65584187 65584576 -83932461 - MTD LTR MaLR -14 405 1 1 1085 414 139 0 0 chr6 65584678 65584750 -83932287 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1085 3920 79 16 30 chr6 65584754 65585326 -83931711 + LTRIS2 LTR ERV1 1 564 0 1 1085 4668 123 15 15 chr6 65585938 65586681 -83930356 + RMER16-int LTR ERVK 702 1444 -3962 1 1085 2650 212 123 18 chr6 65586672 65587529 -83929508 + MuRRS4-int LTR ERV1 760 1671 -3392 1 1085 513 0 0 0 chr6 65587529 65587586 -83929451 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 1085 2650 97 14 88 chr6 65587586 65587908 -83929129 + MuRRS4-int LTR ERV1 1672 1842 -3221 1 1085 1831 74 11 8 chr6 65587911 65588171 -83928866 + LTRIS2 LTR ERV1 304 564 0 1 1085 928 119 0 12 chr6 65588173 65588334 -83928703 + (TA)n Simple_repeat Simple_repeat 1 159 0 1 1085 273 57 0 0 chr6 65588335 65588370 -83928667 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1085 654 126 11 0 chr6 65588371 65588466 -83928571 - B2_Mm2 SINE B2 -97 98 3 1 1085 666 166 13 70 chr6 65588467 65588623 -83928414 - L1_Mur3 LINE L1 -1947 3933 3787 1 1085 5093 167 83 22 chr6 65588624 65589664 -83927373 - RLTR25A LTR ERVK 0 1103 1 1 1085 8418 212 63 20 chr6 65589664 65591654 -83925383 - L1_Mur3 LINE L1 -2089 3791 1699 1 1085 183 42 0 0 chr6 65591654 65591678 -83925359 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1 1085 8418 246 71 13 chr6 65591678 65592488 -83924549 - L1_Mur3 LINE L1 -4182 1698 856 1 1085 333 329 79 0 chr6 65595566 65595700 -83921337 + MER5A DNA MER1_type 8 152 -37 1 1085 366 272 116 31 chr6 65595700 65595829 -83921208 + MTE2a LTR MaLR 1 140 -239 1 1085 598 320 75 101 chr6 65595807 65596231 -83920806 + MT2A LTR ERVL 118 530 -3 1 1085 531 329 102 67 chr6 65596963 65597364 -83919673 - MT2A LTR ERVL -118 415 1 1 1085 238 292 80 40 chr6 65598563 65598813 -83918224 + L1M3 LINE L1 4130 4389 -1751 1 1085 444 111 0 0 chr6 65598834 65598915 -83918122 + (CAAG)n Simple_repeat Simple_repeat 3 83 0 1 1085 2198 176 42 12 chr6 65599087 65599496 -83917541 - MTC LTR MaLR 0 421 1 1 1085 499 194 36 36 chr6 65599498 65599610 -83917427 + PB1D9 SINE Alu 5 116 -4 1 1085 280 254 42 14 chr6 65599683 65599755 -83917282 + ID4 SINE ID 1 74 -9 1 1085 1299 71 60 6 chr6 65600155 65600338 -83916699 - B2_Mm2 SINE B2 -2 193 1 1 1085 842 113 0 8 chr6 65601027 65601161 -83915876 + (TCC)n Simple_repeat Simple_repeat 1 133 0 1 1085 22 0 0 0 chr6 65601682 65601704 -83915333 + AT_rich Low_complexity Low_complexity 1 22 0 1 1085 1294 75 5 5 chr6 65602259 65602447 -83914590 - L1_Mus4 LINE L1 -8 6628 6441 1 1085 249 307 11 0 chr6 65603277 65603365 -83913672 + CT-rich Low_complexity Low_complexity 2 90 0 1 1085 448 156 9 9 chr6 65603371 65603481 -83913556 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 1 1085 316 176 11 34 chr6 65603477 65603512 -83913525 + (CATAT)n Simple_repeat Simple_repeat 3 36 0 1 1085 183 80 0 0 chr6 65603512 65603537 -83913500 + (TCCA)n Simple_repeat Simple_repeat 4 28 0 1 1085 316 176 11 34 chr6 65603537 65603589 -83913448 + (CATAT)n Simple_repeat Simple_repeat 2 53 0 1 1085 1395 218 109 16 chr6 65603887 65604255 -83912782 + MTD LTR MaLR 4 405 -14 1 1085 23 0 0 0 chr6 65605687 65605710 -83911327 + AT_rich Low_complexity Low_complexity 1 23 0 1 1085 334 360 7 32 chr6 65606062 65606217 -83910820 + MIRc SINE MIR 103 253 -15 1 1085 468 0 0 0 chr6 65606252 65606304 -83910733 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1085 3141 235 52 55 chr6 65606912 65607705 -83909332 + RMER19B LTR ERVK 1 792 -110 1 1085 189 0 0 0 chr6 65607705 65607726 -83909311 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1 1085 3141 235 52 55 chr6 65607726 65607829 -83909208 + RMER19B LTR ERVK 793 894 -8 1 1085 570 265 112 67 chr6 65608016 65608436 -83908601 - L1MA9 LINE L1 -18 6294 5856 1 1085 270 238 130 62 chr6 65608781 65608942 -83908095 - L1MA9 LINE L1 -442 5858 5687 1 1085 522 273 121 50 chr6 65608954 65609411 -83907626 - L1MA9 LINE L1 -786 5526 5011 1 1085 755 220 124 10 chr6 65609411 65609604 -83907433 + B3 SINE B2 2 216 0 1 1085 522 270 144 66 chr6 65609604 65609824 -83907213 - L1MA9 LINE L1 -1130 5010 4791 1 1085 567 326 197 63 chr6 65609957 65610510 -83906527 - LTR50 LTR ERVL -168 627 1 1 1085 269 293 110 24 chr6 65611230 65611428 -83905609 + MLT1H LTR MaLR 5 264 -285 1 1085 263 299 57 68 chr6 65611615 65611791 -83905246 + MER113A DNA MER1_type 96 269 -45 1 1085 663 48 0 0 chr6 65612339 65612422 -83904615 + (CTG)n Simple_repeat Simple_repeat 1 83 0 1 1085 301 180 0 16 chr6 65612422 65612474 -83904563 - HAL1-2a_MD LINE L1 -535 2489 2438 1 1085 736 305 89 0 chr6 65612474 65612854 -83904183 - L1_Mur3 LINE L1 -449 5431 5018 1 1085 441 0 0 0 chr6 65613150 65613199 -83903838 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1085 545 76 13 0 chr6 65613510 65613589 -83903448 + (TCC)n Simple_repeat Simple_repeat 2 81 0 1 1085 408 314 20 44 chr6 65614497 65614700 -83902337 - MIRb SINE MIR -54 214 17 1 1085 189 0 0 0 chr6 65616001 65616022 -83901015 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1085 259 268 11 68 chr6 65616324 65616412 -83900625 - ID4 SINE ID 0 83 1 1 1085 1238 297 100 28 chr6 65617118 65617728 -83899309 - Charlie1a DNA MER1_type -46 1409 756 1 1085 874 324 149 20 chr6 65617789 65618325 -83898712 - Charlie1a DNA MER1_type -821 634 30 1 1085 5077 112 9 8 chr6 65618618 65619363 -83897674 + Lx3A LINE L1 6229 6974 -7 1 1085 597 94 0 0 chr6 65620651 65620736 -83896301 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 1 1085 675 37 0 0 chr6 65621381 65621463 -83895574 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1085 388 315 122 12 chr6 65624227 65624391 -83892646 + B3A SINE B2 2 183 -15 1 1085 333 0 0 0 chr6 65624402 65624439 -83892598 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1085 477 0 0 0 chr6 65624439 65624492 -83892545 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1085 813 271 5 5 chr6 65625794 65626002 -83891035 + B3 SINE B2 3 210 -6 1 1085 27 0 0 0 chr6 65626456 65626483 -83890554 + AT_rich Low_complexity Low_complexity 1 27 0 1 1085 23 68 0 0 chr6 65626906 65626950 -83890087 + AT_rich Low_complexity Low_complexity 1 44 0 1 1085 180 182 0 0 chr6 65627589 65627633 -83889404 + T-rich Low_complexity Low_complexity 4 47 0 1 1085 608 207 26 58 chr6 65627634 65627788 -83889249 - B1_Mur1 SINE Alu 0 149 1 1 1085 24 32 0 0 chr6 65628748 65628779 -83888258 + AT_rich Low_complexity Low_complexity 1 31 0 1 1085 32 0 0 0 chr6 65628834 65628866 -83888171 + AT_rich Low_complexity Low_complexity 1 32 0 1 1085 257 151 19 0 chr6 65628909 65628962 -83888075 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1085 702 21 0 30 chr6 65628975 65629074 -83887963 + (TCTCC)n Simple_repeat Simple_repeat 2 97 0 1 1085 567 0 0 0 chr6 65629080 65629143 -83887894 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1 1085 235 203 0 0 chr6 65629299 65629363 -83887674 - Lx6 LINE L1 -46 7414 7351 1 1085 251 54 0 26 chr6 65629381 65629419 -83887618 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 1085 354 100 0 0 chr6 65629474 65629534 -83887503 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1085 417 315 9 9 chr6 65630067 65630176 -83886861 + RSINE1 SINE B4 44 152 -13 1 1085 252 0 0 0 chr6 65630365 65630393 -83886644 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1085 224 204 41 0 chr6 65630847 65630896 -83886141 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1 1085 2803 286 50 24 chr6 65631220 65632271 -83884766 + Lx8 LINE L1 6179 7257 -216 1 1085 296 278 0 65 chr6 65632684 65632761 -83884276 + ID4_ SINE ID 12 83 0 1 1085 183 80 0 0 chr6 65632975 65633000 -83884037 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1085 2772 142 72 58 chr6 65635681 65636234 -83880803 + RMER15 LTR ERVL 9 569 -6 1 1085 432 0 0 0 chr6 65637858 65637906 -83879131 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1085 475 256 57 21 chr6 65638073 65638213 -83878824 + RSINE1 SINE B4 4 148 -17 2 1085 590 169 8 0 chr6 65638597 65638715 -83878322 + (TAGA)n Simple_repeat Simple_repeat 1 119 0 2 1085 244 158 35 0 chr6 65638825 65638882 -83878155 + CT-rich Low_complexity Low_complexity 3 61 0 2 1085 1574 250 12 17 chr6 65641475 65641894 -83875143 + MTD LTR MaLR 3 419 0 2 1085 597 335 0 13 chr6 65642346 65642497 -83874540 + RSINE1 SINE B4 4 152 -13 2 1085 557 344 0 58 chr6 65642690 65642881 -83874156 + B3A SINE B2 3 182 -16 2 1085 294 341 12 12 chr6 65643349 65643521 -83873516 + GA-rich Low_complexity Low_complexity 4 175 0 2 1085 771 142 0 0 chr6 65643880 65644014 -83873023 + (TA)n Simple_repeat Simple_repeat 2 135 0 2 1085 614 307 10 36 chr6 65644244 65644440 -83872597 - ID_B1 SINE B4 0 224 34 2 1085 252 0 0 0 chr6 65644696 65644724 -83872313 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1085 580 289 33 22 chr6 65645383 65645659 -83871378 + L1MA5 LINE L1 6012 6290 -10 2 1085 201 74 0 0 chr6 65645883 65645910 -83871127 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1085 237 317 127 80 chr6 65648716 65649120 -83867917 - L2a LINE L2 0 3426 2939 2 1085 253 351 141 16 chr6 65649695 65650063 -83866974 - L2a LINE L2 -98 3328 2915 2 1085 324 0 0 0 chr6 65650268 65650304 -83866733 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1085 226 308 87 0 chr6 65650426 65650530 -83866507 - L2a LINE L2 -1049 2370 2258 2 1085 38 0 0 0 chr6 65654800 65654838 -83862199 + AT_rich Low_complexity Low_complexity 1 38 0 2 1085 432 267 9 19 chr6 65656824 65656931 -83860106 + B1_Mur1 SINE Alu 39 144 -5 2 1085 1122 210 5 0 chr6 65657315 65657520 -83859517 - B3 SINE B2 -10 206 1 2 1085 884 222 19 106 chr6 65657685 65657892 -83859145 - B3 SINE B2 -1 194 6 2 1085 2257 148 30 19 chr6 65659561 65660022 -83857015 - L1_Mur2 LINE L1 -471 5406 4941 2 1085 300 295 162 25 chr6 65660022 65660182 -83856855 - HAL1-3A_ME LINE L1 -421 2437 2256 2 1085 1150 199 20 0 chr6 65660575 65660776 -83856261 + B3 SINE B2 5 209 -7 2 1085 284 339 44 69 chr6 65662429 65662632 -83854405 - MIRb SINE MIR -36 232 35 2 1085 761 237 100 0 chr6 65663791 65663981 -83853056 - B3 SINE B2 -7 209 1 2 1085 1440 38 0 0 chr6 65663995 65664204 -83852833 + (TG)n Simple_repeat Simple_repeat 1 209 0 2 1085 301 338 82 54 chr6 65664219 65664366 -83852671 - RSINE1 SINE B4 -13 152 2 2 1085 440 250 142 0 chr6 65664399 65664519 -83852518 - B1_Mur1 SINE Alu 0 149 13 2 1085 718 245 0 14 chr6 65664539 65664684 -83852353 - B1_Mur1 SINE Alu -1 148 6 2 1085 5949 65 16 26 chr6 65664694 65664987 -83852050 - RLTR13C2 LTR ERVK 0 808 533 2 1085 5842 54 1 7 chr6 65664987 65665717 -83851320 + L1Md_F2 LINE L1 5855 6580 -2 2 1085 5949 65 16 26 chr6 65665717 65666239 -83850798 - RLTR13C2 LTR ERVK -276 532 1 2 1085 194 255 39 19 chr6 65666596 65666648 -83850389 - L4 LINE RTE -288 1741 1689 2 1086 4676 72 5 3 chr6 65667203 65667826 -83849211 - L1_Mus1 LINE L1 0 6567 5944 2 1086 785 306 83 62 chr6 65668120 65668722 -83848315 + L1MC3 LINE L1 6110 6724 -1061 2 1086 31 0 0 0 chr6 65668763 65668794 -83848243 + AT_rich Low_complexity Low_complexity 1 31 0 2 1086 2811 30 0 0 chr6 65668797 65669136 -83847901 - L1Md_F3 LINE L1 -200 6384 6046 2 1086 474 157 0 0 chr6 65669209 65669292 -83847745 + (TTA)n Simple_repeat Simple_repeat 1 83 0 2 1086 1046 103 7 0 chr6 65669292 65669437 -83847600 - B1_Mus1 SINE Alu -2 146 1 2 1086 450 0 0 0 chr6 65669535 65669585 -83847452 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1086 689 254 32 27 chr6 65669654 65669840 -83847197 + MTEa LTR MaLR 51 237 -142 2 1086 288 53 0 0 chr6 65669851 65669889 -83847148 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1086 487 277 83 27 chr6 65669889 65670149 -83846888 - L1MA4 LINE L1 -361 5939 5665 2 1086 469 324 47 13 chr6 65670330 65670630 -83846407 + L1MC3 LINE L1 6958 7267 -518 2 1086 550 280 39 32 chr6 65670741 65670896 -83846141 - RSINE1 SINE B4 -2 163 8 2 1086 319 220 44 204 chr6 65670979 65671116 -83845921 - MTE2b LTR MaLR -27 352 238 2 1086 492 305 31 8 chr6 65671227 65671485 -83845552 + L1MC3 LINE L1 7467 7730 -55 2 1086 25 51 0 0 chr6 65672046 65672085 -83844952 + AT_rich Low_complexity Low_complexity 1 39 0 2 1086 1587 244 29 6 chr6 65672147 65672493 -83844544 + MTD LTR MaLR 46 399 -20 2 1086 12262 26 1 0 chr6 65672972 65674518 -83842519 - L1_Mm LINE L1 -2351 3532 1986 2 1086 189 341 54 43 chr6 65674646 65674738 -83842299 + MIRb SINE MIR 20 112 -156 2 1086 341 345 7 7 chr6 65675558 65675704 -83841333 + (CA)n Simple_repeat Simple_repeat 2 147 0 2 1086 706 322 178 0 chr6 65677785 65678032 -83839005 + B4A SINE B4 2 292 0 2 1086 230 98 0 38 chr6 65678156 65678209 -83838828 + L1Md_T LINE L1 6532 6582 0 2 1086 1308 83 4 0 chr6 65679383 65679613 -83837424 + (TTTCC)n Simple_repeat Simple_repeat 1 231 0 2 1086 441 0 0 0 chr6 65679746 65679795 -83837242 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1086 297 0 0 0 chr6 65679795 65679827 -83837210 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1086 458 272 0 0 chr6 65679845 65679948 -83837089 - Lx8 LINE L1 -191 7282 7180 2 1086 198 0 0 0 chr6 65680062 65680084 -83836953 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2 1086 762 312 4 44 chr6 65680085 65680313 -83836724 - B4 SINE B4 -73 219 1 2 1086 434 359 92 92 chr6 65680983 65681275 -83835762 + B4A SINE B4 1 292 0 2 1086 384 71 0 0 chr6 65681278 65681334 -83835703 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1086 234 0 0 0 chr6 65681751 65681777 -83835260 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1086 267 237 53 0 chr6 65682781 65682857 -83834180 - MLT1A1 LTR MaLR 0 408 329 2 1086 735 160 56 0 chr6 65683099 65683224 -83833813 + B1_Mur4 SINE Alu 3 134 -16 2 1086 786 271 95 40 chr6 65683441 65683714 -83833323 - B4 SINE B4 -2 290 3 2 1086 21 89 0 0 chr6 65683948 65684004 -83833033 + AT_rich Low_complexity Low_complexity 1 56 0 2 1086 371 292 115 33 chr6 65684632 65685182 -83831855 + L1M2 LINE L1 1979 2621 -3928 2 1086 259 302 52 0 chr6 65685246 65685362 -83831675 - L1_Mur3 LINE L1 -1954 3926 3805 2 1086 1218 282 61 43 chr6 65685445 65685841 -83831196 + MTD LTR MaLR 6 408 -11 2 1086 780 306 35 12 chr6 65685842 65686183 -83830854 + L1M2 LINE L1 4310 4658 -2187 2 1086 4560 179 103 95 chr6 65686259 65686729 -83830308 - Lx5 LINE L1 -131 6919 6443 2 1086 966 83 53 0 chr6 65686729 65686862 -83830175 + B1_Mus1 SINE Alu 2 141 -7 2 1086 4560 179 103 95 chr6 65686862 65686873 -83830164 - Lx5 LINE L1 -608 6442 6431 2 1086 242 238 143 0 chr6 65686873 65686957 -83830080 - MTC LTR MaLR -31 388 293 2 1086 4560 179 103 95 chr6 65686957 65687637 -83829400 - Lx5 LINE L1 -608 6430 5664 2 1086 300 12 56 79 chr6 65687825 65687914 -83829123 + (TTTTTG)n Simple_repeat Simple_repeat 4 90 0 2 1086 928 54 139 0 chr6 65687914 65688043 -83828994 - B1_Mus1 SINE Alu 0 148 2 2 1086 1284 276 87 23 chr6 65688345 65688734 -83828303 + MTD LTR MaLR 1 414 -5 2 1086 192 40 0 0 chr6 65689500 65689525 -83827512 + (C)n Simple_repeat Simple_repeat 1 25 0 2 1086 234 276 72 53 chr6 65689645 65689852 -83827185 - L1M2 LINE L1 -551 5620 5410 2 1086 273 254 135 48 chr6 65690070 65690277 -83826760 - L1M2 LINE L1 -755 5388 5164 2 1086 1206 43 0 0 chr6 65691915 65692056 -83824981 - B1_Mm SINE Alu -6 141 1 2 1086 191 61 30 0 chr6 65692490 65692523 -83824514 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 2 1086 495 331 42 11 chr6 65692593 65692782 -83824255 + B3A SINE B2 1 195 -3 2 1086 430 240 74 118 chr6 65692783 65692986 -83824051 + B2_Mm2 SINE B2 1 194 -1 2 1086 393 22 0 0 chr6 65693285 65693331 -83823706 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1086 221 98 24 0 chr6 65694805 65694846 -83822191 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 2 1086 631 256 68 118 chr6 65694849 65695185 -83821852 + L1_Mur3 LINE L1 4056 4371 -1509 2 1086 219 36 0 0 chr6 65695185 65695213 -83821824 + (CAAAC)n Simple_repeat Simple_repeat 3 30 0 2 1086 631 256 68 118 chr6 65695213 65695318 -83821719 + L1_Mur3 LINE L1 4372 4475 -1405 2 1086 582 272 67 8 chr6 65695314 65695578 -83821459 + L1_Mur3 LINE L1 4779 5065 -821 2 1086 662 252 88 15 chr6 65695582 65695856 -83821181 + L1_Mur3 LINE L1 4008 4301 -1579 2 1086 1485 251 69 5 chr6 65695880 65696269 -83820768 + MTD LTR MaLR 1 414 -5 2 1086 429 0 32 16 chr6 65696317 65696379 -83820658 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1086 323 203 9 9 chr6 65696425 65696501 -83820536 - B1_Mur4 SINE Alu -1 149 44 2 1086 1120 68 0 27 chr6 65696801 65696951 -83820086 + B1_Mus1 SINE Alu 3 148 0 2 1086 467 288 36 55 chr6 65697440 65697660 -83819377 - RLTR14 LTR ERV1 0 382 167 2 1086 231 275 72 0 chr6 65698155 65698224 -83818813 - B1_Mur1 SINE Alu -1 148 75 2 1086 333 112 193 36 chr6 65698455 65698538 -83818499 + RLTR20A2 LTR ERVK 1 96 -438 2 1086 1009 114 90 6 chr6 65698568 65698745 -83818292 - B2_Mm2 SINE B2 -2 193 2 2 1086 324 289 93 0 chr6 65698746 65698843 -83818194 + RLTR20A2 LTR ERVK 63 168 -400 2 1086 351 227 9 76 chr6 65698817 65698922 -83818115 + RLTR20A2 LTR ERVK 406 503 -75 2 1086 2135 200 106 33 chr6 65699084 65699596 -83817441 + RMER15 LTR ERVL 27 575 0 2 1086 269 109 22 0 chr6 65699746 65699792 -83817245 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2 1086 856 278 88 69 chr6 65700624 65701553 -83815484 - L1M2 LINE L1 -95 6487 5517 2 1086 232 314 14 14 chr6 65701559 65701630 -83815407 + ID4_ SINE ID 11 81 -2 2 1086 1069 258 61 70 chr6 65701653 65702012 -83815025 + ORR1E LTR MaLR 4 359 0 2 1086 1249 274 90 12 chr6 65702014 65702668 -83814369 - L1M2 LINE L1 -1294 5551 4847 2 1086 272 314 140 34 chr6 65702706 65703522 -83813515 - L1M2 LINE L1 -3883 2962 2055 2 1086 852 265 10 20 chr6 65703548 65703752 -83813285 + MTD LTR MaLR 1 202 -217 2 1086 576 91 0 0 chr6 65703820 65703908 -83813129 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 2 1086 930 201 71 77 chr6 65703919 65704216 -83812821 + Lx7 LINE L1 7385 7679 -17 2 1086 309 207 70 31 chr6 65704222 65704309 -83812728 + MTD LTR MaLR 176 273 -146 2 1086 366 182 0 0 chr6 65704309 65704408 -83812629 + Lx9 LINE L1 7418 7516 -128 2 1086 522 154 147 0 chr6 65704444 65704587 -83812450 + Lx9 LINE L1 7480 7643 -1 2 1086 4348 168 64 64 chr6 65704701 65705590 -83811447 - RMER19B LTR ERVK -13 889 1 3 1086 268 279 159 18 chr6 65706331 65706444 -83810593 + Arthur1C DNA Tip100 232 360 -3 3 1086 183 139 0 0 chr6 65706532 65706568 -83810469 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 3 1086 210 286 0 0 chr6 65707744 65707786 -83809251 + (CG)n Simple_repeat Simple_repeat 2 43 0 3 1086 315 0 0 0 chr6 65708596 65708631 -83808406 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1086 215 217 17 0 chr6 65710003 65710063 -83806974 + CT-rich Low_complexity Low_complexity 5 65 0 3 1086 308 317 40 56 chr6 65710076 65710202 -83806835 - RSINE1 SINE B4 -169 123 1 3 1086 482 271 48 14 chr6 65710329 65710490 -83806547 - MTEa LTR MaLR -209 170 1 3 1086 376 315 9 9 chr6 65710643 65710755 -83806282 + B4A SINE B4 177 288 -4 3 1086 285 207 0 0 chr6 65710875 65710962 -83806075 + (TA)n Simple_repeat Simple_repeat 2 88 0 3 1086 21 71 0 0 chr6 65711114 65711156 -83805881 + AT_rich Low_complexity Low_complexity 1 42 0 3 1086 231 88 0 0 chr6 65711492 65711526 -83805511 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1086 377 252 110 30 chr6 65711532 65711696 -83805341 - B4 SINE B4 -1 291 115 3 1086 254 167 0 0 chr6 65712331 65712373 -83804664 + RLTR42 LTR ERVK 1 42 -197 3 1086 392 285 71 60 chr6 65712425 65712608 -83804429 + RLTR42 LTR ERVK 55 239 0 3 1086 476 32 16 0 chr6 65713157 65713219 -83803818 + (TCC)n Simple_repeat Simple_repeat 3 65 0 3 1086 1236 54 0 0 chr6 65713219 65713366 -83803671 - B1_Mm SINE Alu 0 147 1 3 1086 439 275 62 6 chr6 65713852 65714013 -83803024 + L1M2 LINE L1 4828 4997 -1146 3 1086 24 32 0 0 chr6 65714020 65714051 -83802986 + AT_rich Low_complexity Low_complexity 1 31 0 3 1086 608 59 12 0 chr6 65714060 65714145 -83802892 + (TG)n Simple_repeat Simple_repeat 1 86 0 3 1086 378 0 0 0 chr6 65714145 65714186 -83802851 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1086 504 247 52 1 chr6 65714191 65714316 -83802721 - RSINE1 SINE B4 -32 133 2 3 1086 370 304 73 32 chr6 65714316 65714363 -83802674 + L1M2 LINE L1 4992 5044 -1099 3 1086 185 0 40 0 chr6 65714363 65714388 -83802649 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1086 370 304 73 32 chr6 65714388 65714588 -83802449 + L1M2 LINE L1 5045 5248 -895 3 1086 468 310 23 8 chr6 65714782 65714912 -83802125 - ID_B1 SINE B4 -12 212 81 3 1086 2274 174 112 12 chr6 65715817 65716300 -83800737 + RMER17B LTR ERVK 428 958 0 3 1086 222 91 0 0 chr6 65716354 65716387 -83800650 + (TTA)n Simple_repeat Simple_repeat 3 35 0 3 1086 1306 268 55 50 chr6 65716396 65716597 -83800440 - Lx7 LINE L1 -4 7692 7482 3 1086 1643 16 16 0 chr6 65716597 65716786 -83800251 + B2_Mm1a SINE B2 2 193 0 3 1086 1306 268 55 50 chr6 65716786 65717188 -83799849 - Lx7 LINE L1 -215 7481 7087 3 1086 347 228 187 49 chr6 65717301 65717504 -83799533 - Lx8 LINE L1 -1 7472 7242 3 1086 679 133 132 8 chr6 65717541 65717622 -83799415 - RLTR20A LTR ERVK -4 537 452 3 1086 342 0 0 0 chr6 65717622 65717660 -83799377 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1086 679 133 132 8 chr6 65717660 65717707 -83799330 - RLTR20A LTR ERVK -90 451 394 3 1086 1049 50 14 0 chr6 65717720 65717860 -83799177 - B1_Mus1 SINE Alu 0 148 7 3 1086 1502 185 169 24 chr6 65717846 65718218 -83798819 - RLTR20A LTR ERVK -115 426 1 3 1086 474 215 54 82 chr6 65718663 65718810 -83798227 + ID_B1 SINE B4 81 223 -1 3 1086 217 240 51 51 chr6 65719784 65719863 -83797174 + ID_B1 SINE B4 83 161 -63 3 1086 2263 139 31 18 chr6 65720107 65720496 -83796541 + ORR1B1 LTR MaLR 1 394 0 3 1086 22 35 0 0 chr6 65720565 65720594 -83796443 + AT_rich Low_complexity Low_complexity 1 29 0 3 1086 752 298 93 8 chr6 65720891 65721290 -83795747 - L1MA5 LINE L1 -371 6631 6199 3 1086 31 26 0 0 chr6 65721291 65721329 -83795708 + AT_rich Low_complexity Low_complexity 1 38 0 3 1086 308 284 108 33 chr6 65721347 65721467 -83795570 - RSINE1 SINE B4 -34 131 3 3 1086 417 196 75 38 chr6 65721491 65721597 -83795440 - PB1D9 SINE Alu -1 119 10 3 1086 266 290 31 51 chr6 65721509 65721607 -83795430 - ID_B1 SINE B4 -48 176 81 3 1086 370 279 126 61 chr6 65721680 65721878 -83795159 - L1M4 LINE L1 -3296 2850 2640 3 1086 495 0 0 0 chr6 65721899 65721954 -83795083 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1086 228 250 53 44 chr6 65722358 65722471 -83794566 - L1MA5 LINE L1 -3679 3166 3053 3 1086 2507 70 0 9 chr6 65722547 65722880 -83794157 - L1_Mus1 LINE L1 0 6567 6238 3 1086 270 0 0 0 chr6 65723016 65723046 -83793991 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3 1086 540 304 64 26 chr6 65723332 65723599 -83793438 - L1MA5 LINE L1 -4150 2699 2423 3 1086 701 247 29 86 chr6 65723657 65723997 -83793040 - MTE2b LTR MaLR 0 379 2 3 1086 715 228 93 71 chr6 65724005 65724274 -83792763 - L1MA5 LINE L1 -4477 2372 2098 3 1086 249 33 0 0 chr6 65724342 65724372 -83792665 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 3 1086 1651 203 24 28 chr6 65724392 65724846 -83792191 - Lx4B LINE L1 -45 6955 6498 3 1086 1424 140 0 17 chr6 65724840 65725073 -83791964 - Lx4B LINE L1 -1124 5876 5648 3 1086 3343 138 36 3 chr6 65725073 65725676 -83791361 - Lx4B LINE L1 -1578 4299 3677 3 1086 369 0 0 0 chr6 65725942 65725983 -83791054 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1086 792 336 106 8 chr6 65726296 65726788 -83790249 - Lx8 LINE L1 -359 7114 6575 3 1086 297 340 43 43 chr6 65726959 65727168 -83789869 + ORR1E LTR MaLR 3 211 -148 3 1086 284 354 68 88 chr6 65727612 65727863 -83789174 - ORR1E LTR MaLR -45 314 69 3 1086 1654 211 56 72 chr6 65728017 65728431 -83788606 - MTD LTR MaLR -12 407 1 3 1086 185 0 0 39 chr6 65730134 65730160 -83786877 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3 1086 22 35 0 0 chr6 65732258 65732287 -83784750 + AT_rich Low_complexity Low_complexity 1 29 0 3 1086 206 211 42 34 chr6 65732871 65732989 -83784048 + (TATAA)n Simple_repeat Simple_repeat 1 119 0 3 1086 350 276 26 26 chr6 65733279 65733432 -83783605 - L1MA4 LINE L1 -355 5936 5784 3 1086 522 330 148 31 chr6 65733613 65734441 -83782596 - L2a LINE L2 -34 3392 2457 3 1086 12537 53 1 12 chr6 65734473 65736844 -83780193 - L1Md_F3 LINE L1 -15 6569 4225 3 1086 1165 272 97 6 chr6 65736946 65737275 -83779762 - ORR1E LTR MaLR 0 359 1 3 1086 3289 261 89 69 chr6 65737275 65738473 -83778564 - ORR1E-int LTR MaLR 0 1370 149 3 1086 607 345 83 15 chr6 65739215 65739480 -83777557 + B4A SINE B4 6 288 -4 3 1086 27 29 0 0 chr6 65739562 65739596 -83777441 + AT_rich Low_complexity Low_complexity 1 34 0 3 1086 243 61 0 0 chr6 65740264 65740297 -83776740 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1086 969 94 0 0 chr6 65741698 65741836 -83775201 + (TTC)n Simple_repeat Simple_repeat 1 138 0 3 1086 252 221 235 0 chr6 65742041 65742109 -83774928 + RSINE1 SINE B4 57 140 -25 3 1086 23 33 0 0 chr6 65742304 65742334 -83774703 + AT_rich Low_complexity Low_complexity 1 30 0 3 1086 465 317 23 29 chr6 65742601 65742773 -83774264 + ID_B1 SINE B4 54 224 0 3 1086 460 167 52 110 chr6 65743011 65743166 -83773871 - RMER20B LTR ERVK -17 610 465 3 1086 1334 215 149 22 chr6 65743199 65743522 -83773515 - RMER20B LTR ERVK -263 364 1 3 1086 25 0 0 0 chr6 65744170 65744195 -83772842 + AT_rich Low_complexity Low_complexity 1 25 0 3 1086 723 108 0 0 chr6 65744520 65744649 -83772388 + (TG)n Simple_repeat Simple_repeat 2 130 0 3 1086 232 239 0 0 chr6 65745352 65745398 -83771639 - ID_B1 SINE B4 -3 221 176 3 1086 510 298 109 48 chr6 65745404 65745459 -83771578 - MLT2C1 LTR ERVL -50 347 283 3 1086 1266 225 132 3 chr6 65745459 65745784 -83771253 + ORR1D2 LTR MaLR 4 370 0 3 1086 510 298 109 48 chr6 65745784 65745957 -83771080 - MLT2C1 LTR ERVL -115 282 105 3 1086 2002 123 176 14 chr6 65746524 65746894 -83770143 - RLTR23 LTR ERV1 0 430 1 3 1086 204 143 29 0 chr6 65747206 65747241 -83769796 + CT-rich Low_complexity Low_complexity 3 38 0 3 1086 2338 137 68 14 chr6 65747347 65747775 -83769262 + RLTR11B LTR ERVK 3 453 0 3 1086 1859 305 143 8 chr6 65747794 65748762 -83768275 - Lx8 LINE L1 -162 7311 6214 3 1086 254 196 21 21 chr6 65748793 65748887 -83768150 + CT-rich Low_complexity Low_complexity 2 95 0 3 1086 416 239 0 11 chr6 65749798 65749891 -83767146 - RMER20B LTR ERVK -25 602 511 3 1086 659 255 68 0 chr6 65749915 65750076 -83766961 - RMER20B LTR ERVK -218 409 238 3 1086 398 236 11 11 chr6 65750109 65750199 -83766838 - RMER20B LTR ERVK -534 93 4 3 1086 216 182 0 0 chr6 65750527 65750571 -83766466 + A-rich Low_complexity Low_complexity 1 44 0 3 1086 216 67 0 0 chr6 65752001 65752031 -83765006 + (TTA)n Simple_repeat Simple_repeat 3 32 0 3 1086 300 53 0 0 chr6 65752859 65752897 -83764140 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 3 1086 493 235 91 85 chr6 65753586 65753926 -83763111 + MTE2b LTR MaLR 1 377 -2 3 1086 443 241 0 3 chr6 65755503 65755607 -83761430 - ORR1D2 LTR MaLR -14 407 282 3 1086 309 289 65 78 chr6 65755612 65755827 -83761210 - ORR1D2 LTR MaLR -13 357 135 3 1086 459 0 0 0 chr6 65755827 65755878 -83761159 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1086 304 348 95 60 chr6 65755878 65755998 -83761039 - ORR1D2 LTR MaLR -236 134 10 3 1086 216 0 0 0 chr6 65756310 65756334 -83760703 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1086 2452 173 30 30 chr6 65756337 65756867 -83760170 + MYSERV6-int LTR ERVK 8274 8803 -156 3 1086 443 275 0 0 chr6 65756977 65757068 -83759969 + RSINE1 SINE B4 38 128 -37 3 1086 405 0 0 0 chr6 65757075 65757120 -83759917 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1086 520 214 29 0 chr6 65757126 65757266 -83759771 - MYSERV-int LTR ERVK -1101 5449 5306 3 1086 561 265 109 11 chr6 65757266 65757449 -83759588 - RMER4A LTR ERVK -27 439 239 3 1086 1701 192 42 44 chr6 65757547 65758013 -83759024 - Lx4A LINE L1 -644 6414 5883 3 1086 469 255 181 13 chr6 65758383 65758697 -83758340 - L1MC LINE L1 -681 5663 5297 3 1086 403 284 52 16 chr6 65758714 65758907 -83758130 - L1MC LINE L1 -915 5231 5032 3 1086 1869 179 0 16 chr6 65758910 65759223 -83757814 - MTC LTR MaLR -8 413 106 3 1086 2489 77 52 3 chr6 65759223 65759583 -83757454 - L1Md_F2 LINE L1 -299 6283 5905 3 1086 2133 90 0 7 chr6 65759583 65759875 -83757162 + L1_Mus1 LINE L1 6278 6567 0 3 1086 432 0 0 0 chr6 65759885 65759933 -83757104 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 3 1086 2609 123 41 136 chr6 65759973 65760611 -83756426 - RMER6A LTR ERVK -50 706 130 3 1086 1836 227 39 81 chr6 65760623 65761491 -83755546 - L1_Rod LINE L1 -2383 3464 2633 3 1086 2439 217 41 76 chr6 65761493 65762252 -83754785 - RLTR40 LTR ERVK -46 771 40 3 1086 795 290 105 12 chr6 65762287 65762939 -83754098 - L1_Rod LINE L1 -3228 2619 1904 3 1086 1163 53 0 30 chr6 65762939 65763174 -83753863 + (TTC)n Simple_repeat Simple_repeat 1 227 0 3 1086 657 317 59 22 chr6 65763174 65763187 -83753850 - L1_Rod LINE L1 -3944 1903 1893 3 1086 297 75 0 0 chr6 65763187 65763227 -83753810 + (TCC)n Simple_repeat Simple_repeat 3 42 0 4 1086 882 0 0 0 chr6 65763312 65763410 -83753627 + (TTC)n Simple_repeat Simple_repeat 1 98 0 4 1086 6348 96 23 5 chr6 65764585 65765525 -83751512 + Lx LINE L1 5693 6649 -5 4 1086 1005 201 10 49 chr6 65765557 65765651 -83751386 + B3 SINE B2 2 93 -123 4 1086 2102 189 65 32 chr6 65765651 65766155 -83750882 + RLTR28 LTR ERVL 4 524 0 4 1086 1005 201 10 49 chr6 65766155 65766264 -83750773 + B3 SINE B2 94 197 -19 4 1086 751 190 0 42 chr6 65766461 65766604 -83750433 - B1_Mur1 SINE Alu -1 148 12 4 1086 278 69 0 65 chr6 65766659 65766721 -83750316 + (TTC)n Simple_repeat Simple_repeat 2 59 0 4 1086 666 299 72 31 chr6 65766773 65767228 -83749809 - L1MB2 LINE L1 -62 6109 5636 4 1086 28 48 0 0 chr6 65767382 65767424 -83749613 + AT_rich Low_complexity Low_complexity 1 42 0 4 1086 698 276 13 13 chr6 65767424 65767582 -83749455 - RSINE1 SINE B4 -4 161 4 4 1086 200 330 49 60 chr6 65767962 65768146 -83748891 + L3 LINE CR1 4132 4313 -176 4 1086 720 192 216 0 chr6 65769550 65769717 -83747320 + B3 SINE B2 1 203 -13 4 1086 363 264 90 66 chr6 65772017 65772183 -83744854 - MLT1E2 LTR MaLR -3 624 455 4 1086 339 85 0 0 chr6 65772183 65772230 -83744807 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 4 1086 755 234 29 72 chr6 65772236 65772443 -83744594 - B3 SINE B2 -11 205 8 4 1086 927 142 66 76 chr6 65772526 65772724 -83744313 + URR1B DNA MER1_type 30 225 0 4 1086 25 31 0 0 chr6 65772954 65772986 -83744051 + AT_rich Low_complexity Low_complexity 1 32 0 4 1086 204 67 0 0 chr6 65773049 65773079 -83743958 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1086 24 0 0 0 chr6 65773396 65773420 -83743617 + AT_rich Low_complexity Low_complexity 1 24 0 4 1086 5335 64 0 0 chr6 65774070 65774744 -83742293 - L1Md_F2 LINE L1 -12 6570 5897 4 1086 243 0 0 0 chr6 65775925 65775952 -83741085 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 1086 519 17 0 0 chr6 65775952 65776011 -83741026 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1086 22 35 0 0 chr6 65776766 65776795 -83740242 + GC_rich Low_complexity Low_complexity 1 29 0 4 1086 2549 106 15 5 chr6 65777057 65777447 -83739590 - RLTR9D LTR ERVK 0 403 10 4 1086 26 50 0 0 chr6 65778052 65778092 -83738945 + AT_rich Low_complexity Low_complexity 1 40 0 4 1086 1315 218 127 24 chr6 65778257 65778596 -83738441 - MTE2b LTR MaLR 0 379 6 4 1086 609 270 44 5 chr6 65780192 65780397 -83736640 - B3 SINE B2 -2 214 2 4 1086 365 102 0 17 chr6 65780549 65780609 -83736428 + (TTCCC)n Simple_repeat Simple_repeat 2 60 0 4 1086 26 0 0 0 chr6 65780676 65780702 -83736335 + AT_rich Low_complexity Low_complexity 1 26 0 4 1086 696 335 30 86 chr6 65781802 65782230 -83734807 - MLT2D LTR ERVL -10 404 1 4 1086 1121 81 0 20 chr6 65782758 65782909 -83734128 + B1_Mus1 SINE Alu 1 148 0 4 1086 248 28 56 0 chr6 65782925 65782961 -83734076 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 4 1086 363 321 51 77 chr6 65786016 65786289 -83730748 - MLT1F1 LTR MaLR -2 567 302 4 1086 213 300 29 0 chr6 65786479 65786549 -83730488 - L2b LINE L2 -6 3369 3298 4 1086 3360 48 2 0 chr6 65787726 65788165 -83728872 + L1Md_F2 LINE L1 5146 5585 -298 4 1086 7764 57 4 2 chr6 65788166 65789147 -83727890 + L1Md_F2 LINE L1 5587 6569 -13 4 1086 186 43 0 0 chr6 65789150 65789173 -83727864 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1086 592 296 39 17 chr6 65792778 65792957 -83724080 + MTEa LTR MaLR 197 379 0 4 1086 225 94 0 0 chr6 65793795 65793827 -83723210 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1086 12325 94 9 15 chr6 65793831 65796815 -83720222 - Lx3A LINE L1 -7 6974 4013 4 1086 3904 91 25 0 chr6 65796816 65797419 -83719618 + Lx3A LINE L1 3390 4007 -1879 4 1086 186 43 0 0 chr6 65797734 65797757 -83719280 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1086 218 324 14 0 chr6 65797757 65797831 -83719206 - PB1D7 SINE Alu -10 110 36 4 1087 275 336 44 26 chr6 65798991 65799104 -83717933 - PB1D10 SINE Alu -1 116 2 4 1087 519 60 0 0 chr6 65800205 65800272 -83716765 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 4 1087 471 291 28 34 chr6 65800294 65800472 -83716565 - B3A SINE B2 -19 179 3 4 1087 1029 116 0 0 chr6 65800735 65800882 -83716155 + B1_Mus1 SINE Alu 1 147 -1 4 1087 225 102 19 75 chr6 65800883 65800936 -83716101 + A-rich Low_complexity Low_complexity 1 50 0 4 1087 283 274 24 12 chr6 65801133 65801218 -83715819 + ORR1E LTR MaLR 116 201 -158 4 1087 1483 216 39 7 chr6 65801396 65801703 -83715334 + MTD LTR MaLR 1 317 -102 4 1087 544 297 33 14 chr6 65802489 65802701 -83714336 - B3 SINE B2 0 216 1 4 1087 381 325 40 58 chr6 65803012 65803185 -83713852 - ORR1E LTR MaLR -170 189 20 4 1087 241 313 51 72 chr6 65803998 65804136 -83712901 + B1F1 SINE Alu 5 139 -10 4 1087 703 255 40 45 chr6 65804137 65804347 -83712690 + MTEa LTR MaLR 1 210 -169 4 1087 189 0 0 0 chr6 65804347 65804368 -83712669 + (CAGT)n Simple_repeat Simple_repeat 4 24 0 4 1087 703 255 40 45 chr6 65804368 65804379 -83712658 + MTEa LTR MaLR 211 221 -158 4 1087 462 143 0 0 chr6 65804379 65804484 -83712553 + (TC)n Simple_repeat Simple_repeat 2 106 0 4 1087 293 198 71 122 chr6 65804484 65804616 -83712421 + MTEa LTR MaLR 240 364 -15 4 1087 397 300 20 0 chr6 65805747 65805847 -83711190 - ID_B1 SINE B4 -9 215 114 4 1087 834 42 25 0 chr6 65808511 65808630 -83708407 + (TCTA)n Simple_repeat Simple_repeat 3 124 0 4 1087 23 0 0 0 chr6 65808681 65808704 -83708333 + AT_rich Low_complexity Low_complexity 1 23 0 4 1087 24 0 0 0 chr6 65812252 65812276 -83704761 + AT_rich Low_complexity Low_complexity 1 24 0 4 1087 246 301 0 0 chr6 65814175 65814258 -83702779 - U6 snRNA snRNA -11 96 14 4 1087 306 309 89 64 chr6 65814310 65814592 -83702445 - B4 SINE B4 -2 290 1 4 1087 3363 23 23 0 chr6 65816328 65816715 -83700322 - MTA_Mm LTR MaLR 0 396 1 4 1087 9621 17 0 0 chr6 65816715 65817813 -83699224 - MTA_Mm-int LTR MaLR 0 1098 1 4 1087 3504 25 0 0 chr6 65817813 65818209 -83698828 - MTA_Mm LTR MaLR 0 396 1 4 1087 52 17 0 0 chr6 65818399 65818458 -83698579 + AT_rich Low_complexity Low_complexity 1 59 0 4 1087 1377 71 22 0 chr6 65819885 65820067 -83696970 - B2_Mm1t SINE B2 -7 186 1 4 1087 243 0 0 0 chr6 65821203 65821230 -83695807 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1087 340 218 110 89 chr6 65821230 65821376 -83695661 - RSINE1 SINE B4 0 165 17 4 1087 401 403 0 7 chr6 65823214 65823364 -83693673 - RSINE1 SINE B4 -15 150 2 4 1087 253 244 37 0 chr6 65823930 65824012 -83693025 - L1MA9 LINE L1 -55 6257 6173 4 1087 381 228 156 78 chr6 65824228 65824485 -83692552 - L1MA9 LINE L1 -174 6138 5862 4 1087 432 0 0 0 chr6 65824826 65824874 -83692163 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1087 23 54 0 0 chr6 65824923 65824960 -83692077 + AT_rich Low_complexity Low_complexity 1 37 0 4 1087 234 150 0 0 chr6 65825243 65825283 -83691754 + (GGA)n Simple_repeat Simple_repeat 3 42 0 4 1087 24 53 0 0 chr6 65825484 65825522 -83691515 + AT_rich Low_complexity Low_complexity 1 38 0 4 1087 779 302 141 32 chr6 65825530 65825998 -83691039 - Lx8 LINE L1 -10 7463 6945 4 1087 2125 115 13 84 chr6 65828893 65829274 -83687763 - ORR1B1 LTR MaLR 0 394 41 4 1087 22 0 0 0 chr6 65829283 65829305 -83687732 + AT_rich Low_complexity Low_complexity 1 22 0 4 1087 278 291 43 43 chr6 65829427 65829542 -83687495 + PB1D10 SINE Alu 1 115 -2 4 1087 324 48 0 0 chr6 65829993 65830035 -83687002 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1087 820 214 111 16 chr6 65830120 65830310 -83686727 + B3 SINE B2 1 208 -8 4 1087 903 280 67 52 chr6 65834535 65834923 -83682114 - Lx6 LINE L1 -56 7404 7011 4 1087 237 33 0 0 chr6 65835213 65835243 -83681794 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1087 258 265 0 56 chr6 65835371 65835443 -83681594 - ID4 SINE ID -14 69 2 4 1087 1398 74 5 16 chr6 65837604 65837796 -83679241 + B2_Mm1t SINE B2 2 191 -2 4 1087 230 210 37 5 chr6 65838055 65838270 -83678767 + (TA)n Simple_repeat Simple_repeat 1 222 0 4 1087 1303 294 206 37 chr6 65839101 65840293 -83676744 - Charlie1a DNA MER1_type -55 1400 10 4 1087 1197 36 0 0 chr6 65841097 65841235 -83675802 + B1_Mus2 SINE Alu 1 138 -9 4 1087 305 19 18 53 chr6 65841235 65841292 -83675745 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 4 1087 339 85 0 0 chr6 65842987 65843034 -83674003 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1087 399 318 32 74 chr6 65843041 65843231 -83673806 - B3A SINE B2 -16 182 1 4 1087 533 12 0 59 chr6 65843254 65843339 -83673698 - L1Md_F2 LINE L1 0 6582 6503 4 1087 315 0 0 0 chr6 65844799 65844834 -83672203 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 4 1087 21 0 0 0 chr6 65845281 65845302 -83671735 + AT_rich Low_complexity Low_complexity 1 21 0 4 1087 237 108 0 0 chr6 65845973 65846010 -83671027 + (CTG)n Simple_repeat Simple_repeat 1 37 0 4 1087 1030 303 55 27 chr6 65846024 65846475 -83670562 - RMER15-int LTR ERVL -3141 1858 1395 4 1087 842 263 11 0 chr6 65846490 65846665 -83670372 - B3 SINE B2 -38 178 2 4 1087 402 291 56 7 chr6 65846811 65846953 -83670084 + B1F2 SINE Alu 1 149 0 4 1087 207 167 20 20 chr6 65847992 65848041 -83668996 + (TAA)n Simple_repeat Simple_repeat 3 51 0 4 1087 180 0 0 0 chr6 65848408 65848428 -83668609 + (TCC)n Simple_repeat Simple_repeat 1 20 0 4 1087 3973 226 120 16 chr6 65848430 65850297 -83666740 - Lx5 LINE L1 -104 7356 4973 4 1087 441 127 0 0 chr6 65850289 65850360 -83666677 + L1_Mur2 LINE L1 4904 4974 -903 4 1087 335 283 24 81 chr6 65852313 65852436 -83664601 + ID_B1 SINE B4 96 211 -13 4 1087 831 21 0 0 chr6 65852444 65852541 -83664496 + (GA)n Simple_repeat Simple_repeat 1 97 0 4 1087 21 0 0 0 chr6 65852579 65852600 -83664437 + AT_rich Low_complexity Low_complexity 1 21 0 5 1087 283 306 12 12 chr6 65852684 65852770 -83664267 + RSINE1 SINE B4 3 88 -77 5 1087 1239 248 108 12 chr6 65852849 65853184 -83663853 + MTD LTR MaLR 1 367 -52 5 1087 201 211 0 0 chr6 65853255 65853312 -83663725 + (TAA)n Simple_repeat Simple_repeat 3 59 0 5 1087 2878 117 78 17 chr6 65854729 65855269 -83661768 - Lx3A LINE L1 -609 6372 5800 5 1087 5925 77 10 7 chr6 65855266 65856156 -83660881 - L1_Mur1 LINE L1 -3482 2404 1512 5 1087 1285 242 88 18 chr6 65856544 65857020 -83660017 - RLTR12B LTR ERVK -9 559 1 5 1087 554 259 35 7 chr6 65858421 65858565 -83658472 - B1_Mur3 SINE Alu 0 149 2 5 1087 1121 76 7 0 chr6 65858607 65858751 -83658286 + B1_Mus2 SINE Alu 3 147 0 5 1087 489 76 0 0 chr6 65858885 65858951 -83658086 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1087 947 292 89 41 chr6 65858954 65859471 -83657566 - Lx9 LINE L1 -187 7457 6916 5 1087 23 54 0 0 chr6 65862304 65862341 -83654696 + AT_rich Low_complexity Low_complexity 1 37 0 5 1087 259 317 32 71 chr6 65862436 65862625 -83654412 - MTE2b LTR MaLR 0 379 197 5 1087 23 0 0 0 chr6 65863659 65863682 -83653355 + AT_rich Low_complexity Low_complexity 1 23 0 5 1087 1085 301 71 34 chr6 65863683 65864188 -83652849 - Lx9 LINE L1 -149 7495 6972 5 1087 1831 280 80 0 chr6 65864303 65864907 -83652130 + Lx9 LINE L1 6334 6985 -659 5 1087 435 119 0 0 chr6 65866093 65866160 -83650877 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1087 263 75 25 0 chr6 65866475 65866515 -83650522 - RLTR31_Mur LTR ERVK 0 553 513 5 1087 2355 221 63 37 chr6 65866510 65867110 -83649927 - RLTR17 LTR ERVK -73 619 4 5 1087 944 89 30 48 chr6 65867391 65867556 -83649481 - URR1A DNA MER1_type -4 222 61 5 1087 619 276 0 0 chr6 65868163 65868290 -83648747 + B1F SINE Alu 16 142 -7 5 1087 265 347 42 0 chr6 65869960 65870055 -83646982 - MER81 DNA AcHobo -11 103 5 5 1087 538 118 30 18 chr6 65870246 65870368 -83646669 + B1_Mus2 SINE Alu 28 147 -1 5 1087 263 324 42 21 chr6 65872429 65872571 -83644466 + MER5B DNA MER1_type 7 151 -27 5 1087 331 287 102 65 chr6 65872759 65872975 -83644062 + MIRb SINE MIR 36 259 -9 5 1087 335 301 52 22 chr6 65873090 65873226 -83643811 + MER5B DNA MER1_type 4 143 -35 5 1087 288 208 19 0 chr6 65874854 65874907 -83642130 - RSINE1 SINE B4 -108 57 4 5 1087 562 254 38 12 chr6 65874974 65875128 -83641909 - ID_B1 SINE B4 -52 240 84 5 1087 445 323 15 23 chr6 65875169 65875299 -83641738 + B4A SINE B4 2 130 -162 5 1087 614 47 12 0 chr6 65875605 65875691 -83641346 + (GA)n Simple_repeat Simple_repeat 1 87 0 5 1087 248 212 14 108 chr6 65876332 65876406 -83640631 - MTEb LTR MaLR -14 365 299 5 1087 22 0 0 0 chr6 65877140 65877162 -83639875 + AT_rich Low_complexity Low_complexity 1 22 0 5 1087 354 23 0 0 chr6 65878671 65878714 -83638323 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1087 30 0 0 0 chr6 65878714 65878744 -83638293 + AT_rich Low_complexity Low_complexity 1 30 0 5 1087 523 199 241 72 chr6 65879237 65879432 -83637605 + MT2A LTR ERVL 233 460 -73 5 1087 330 26 0 0 chr6 65879432 65879471 -83637566 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1087 245 244 12 82 chr6 65879543 65879628 -83637409 + MLT2B5 LTR ERVL 477 555 0 5 1087 277 282 146 24 chr6 65879699 65879816 -83637221 - L1MB5 LINE L1 -20 6154 6032 5 1087 901 108 7 13 chr6 65879816 65879966 -83637071 + (GGAAA)n Simple_repeat Simple_repeat 3 151 0 5 1087 277 275 211 21 chr6 65879966 65880319 -83636718 - L1MB5 LINE L1 -143 6031 5593 5 1087 388 281 68 24 chr6 65880316 65880679 -83636358 - Lx7 LINE L1 0 7696 7223 5 1087 469 296 98 80 chr6 65880747 65881242 -83635795 - L1MB5 LINE L1 -2123 4023 3512 5 1087 273 264 70 70 chr6 65881904 65882018 -83635019 - PB1D10 SINE Alu -2 115 2 5 1087 245 185 0 0 chr6 65882372 65882447 -83634590 + T-rich Low_complexity Low_complexity 1 75 0 5 1087 298 234 0 13 chr6 65884638 65884716 -83632321 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 1087 730 275 97 0 chr6 65887354 65887612 -83629425 + Lx8 LINE L1 7011 7293 -180 5 1087 22 70 0 0 chr6 65887699 65887742 -83629295 + AT_rich Low_complexity Low_complexity 1 43 0 5 1087 885 161 17 23 chr6 65888344 65888516 -83628521 + B2_Mm2 SINE B2 4 174 -21 5 1087 405 0 0 0 chr6 65889255 65889300 -83627737 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1087 26 50 0 0 chr6 65889475 65889515 -83627522 + AT_rich Low_complexity Low_complexity 1 40 0 5 1087 351 305 61 8 chr6 65889827 65889959 -83627078 + B1F SINE Alu 1 139 -10 5 1087 322 232 0 0 chr6 65889978 65890043 -83626994 + ID4 SINE ID 6 70 -82 5 1087 2608 218 81 18 chr6 65890076 65890734 -83626303 + L1_Rod LINE L1 484 1182 -6426 5 1087 533 133 10 0 chr6 65890750 65890848 -83626189 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 5 1087 2613 187 355 23 chr6 65890863 65891848 -83625189 + L1_Rod LINE L1 1203 2514 -3333 5 1087 595 248 0 0 chr6 65891848 65891965 -83625072 + B1_Mur2 SINE Alu 1 117 -32 5 1087 1129 244 148 5 chr6 65891965 65892385 -83624652 + Lx9 LINE L1 7165 7644 0 5 1087 689 180 18 18 chr6 65892373 65892543 -83624494 + L1_Rod LINE L1 2580 2749 -3098 5 1087 2418 162 64 54 chr6 65892543 65893060 -83623977 + RLTR28 LTR ERVL 1 522 -2 5 1087 21 0 0 0 chr6 65893060 65893081 -83623956 + AT_rich Low_complexity Low_complexity 1 21 0 5 1087 454 273 28 38 chr6 65893081 65893294 -83623743 + L1_Rod LINE L1 2768 2978 -2869 5 1087 4871 153 61 12 chr6 65893325 65894311 -83622726 + L1_Mur3 LINE L1 3627 4660 -1220 5 1087 1491 243 118 89 chr6 65894313 65895032 -83622005 + Lx6 LINE L1 605 1344 -6384 5 1087 1530 253 90 18 chr6 65895034 65895916 -83621121 + Lx6 LINE L1 6126 7210 -434 5 1087 362 238 24 94 chr6 65895925 65896145 -83620892 - RMER4B LTR ERVK -16 569 332 5 1087 1994 108 42 13 chr6 65896179 65896489 -83620548 - ORR1A2 LTR MaLR -8 319 1 5 1087 1815 124 15 0 chr6 65896489 65896762 -83620275 - ORR1A2-int LTR MaLR 0 1963 1687 5 1087 797 216 125 59 chr6 65896771 65897027 -83620010 - RMER4B LTR ERVK -295 290 18 5 1087 1198 204 85 7 chr6 65897031 65897416 -83619621 + Lx6 LINE L1 7201 7643 -1 5 1087 1503 278 39 22 chr6 65898282 65898691 -83618346 + Lx8 LINE L1 6546 6961 -512 5 1087 259 315 94 57 chr6 65899297 65899377 -83617660 + Lx8 LINE L1 7026 7105 -368 5 1087 1881 205 86 0 chr6 65899377 65899763 -83617274 + MTC LTR MaLR 3 421 0 5 1087 259 315 94 57 chr6 65899763 65899874 -83617163 + Lx8 LINE L1 7106 7224 -249 5 1087 450 267 17 0 chr6 65900070 65900186 -83616851 - MLT1A1 LTR MaLR 0 408 291 5 1087 216 0 0 0 chr6 65901227 65901251 -83615786 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5 1087 1033 312 90 35 chr6 65901457 65902406 -83614631 + L1M2 LINE L1 2926 3948 -1932 5 1087 267 279 170 44 chr6 65904393 65904700 -83612337 + L1M2 LINE L1 3968 4322 -1818 5 1087 389 310 143 74 chr6 65904709 65904953 -83612084 + B4 SINE B4 10 270 -22 5 1087 225 94 0 0 chr6 65905084 65905116 -83611921 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1087 1480 183 140 3 chr6 65905152 65905481 -83611556 - ORR1D1 LTR MaLR 0 374 1 5 1087 486 312 116 17 chr6 65905568 65906168 -83610869 + L1M2 LINE L1 4813 5477 -370 5 1087 231 114 0 0 chr6 65906335 65906370 -83610667 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1087 3920 88 2 0 chr6 65906381 65906912 -83610125 - L1_Mus1 LINE L1 -1 6566 6035 5 1087 415 118 0 23 chr6 65907098 65907185 -83609852 + (TA)n Simple_repeat Simple_repeat 2 86 0 5 1087 21144 161 20 84 chr6 65908251 65911831 -83605206 + Lx LINE L1 541 4206 -1671 5 1087 4072 32 2 18 chr6 65911831 65912311 -83604726 - RLTR1C LTR ERV1 0 503 29 5 1087 3437 18 5 0 chr6 65912311 65912705 -83604332 - MTA_Mm LTR MaLR 0 396 1 5 1087 9101 33 4 1 chr6 65912705 65913800 -83603237 - MTA_Mm-int LTR MaLR 0 1098 1 5 1087 3405 23 5 0 chr6 65913800 65914194 -83602843 - MTA_Mm LTR MaLR 0 396 1 5 1087 4072 32 2 18 chr6 65914194 65914222 -83602815 - RLTR1C LTR ERV1 -475 28 3 5 1087 21144 168 25 105 chr6 65914222 65914631 -83602406 + Lx LINE L1 4207 4622 -1255 5 1087 315 0 0 0 chr6 65914631 65914666 -83602371 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 1087 21144 163 32 54 chr6 65914666 65916636 -83600401 + Lx LINE L1 4623 6640 -14 5 1087 21 0 0 0 chr6 65917622 65917643 -83599394 + AT_rich Low_complexity Low_complexity 1 21 0 5 1087 1147 61 7 0 chr6 65917643 65917790 -83599247 - B1_Mus1 SINE Alu 0 148 1 5 1087 2685 67 36 0 chr6 65917923 65918282 -83598755 - L1Md_F2 LINE L1 -12 6570 6199 5 1087 549 44 0 0 chr6 65918394 65918462 -83598575 + (TA)n Simple_repeat Simple_repeat 1 68 0 5 1087 297 0 0 0 chr6 65918479 65918512 -83598525 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1087 213 261 0 44 chr6 65918734 65918802 -83598235 + CT-rich Low_complexity Low_complexity 1 65 0 5 1087 732 295 92 4 chr6 65919077 65919349 -83597688 - LTR40a LTR ERVL -223 296 1 5 1087 26 0 0 0 chr6 65920082 65920108 -83596929 + AT_rich Low_complexity Low_complexity 1 26 0 5 1087 216 255 0 0 chr6 65920615 65920662 -83596375 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 5 1087 204 163 0 23 chr6 65921202 65921246 -83595791 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 5 1087 335 189 81 6 chr6 65921777 65921937 -83595100 + (TA)n Simple_repeat Simple_repeat 1 172 0 5 1087 290 332 165 66 chr6 65922536 65922778 -83594259 + MLT1F1 LTR MaLR 218 507 -62 5 1087 619 294 68 91 chr6 65923011 65923553 -83593484 + SRV_MM-int LTR ERVK 2776 3728 -4489 5 1087 266 297 21 21 chr6 65923737 65923830 -83593207 + RMER16-int LTR ERVK 2109 2201 -3205 5 1087 605 301 48 40 chr6 65924847 65925435 -83591602 + RMER16-int LTR ERVK 3241 3619 -1787 5 1087 205 72 45 45 chr6 65925953 65925997 -83591040 + CT-rich Low_complexity Low_complexity 5 48 0 5 1087 2239 150 6 11 chr6 65926763 65927127 -83589910 - L1VL4 LINE L1 -5518 784 423 5 1087 1003 238 51 4 chr6 65927513 65927749 -83589288 - MTD LTR MaLR 0 419 173 5 1087 920 306 78 67 chr6 65927782 65928245 -83588792 + Lx8 LINE L1 6319 6786 -687 5 1087 519 123 0 0 chr6 65928988 65929069 -83587968 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 5 1088 196 323 72 54 chr6 65929977 65930144 -83586893 - MIR SINE MIR -78 184 15 5 1088 408 216 23 0 chr6 65932420 65932508 -83584529 + MTC LTR MaLR 1 90 -331 5 1088 974 206 144 130 chr6 65932536 65933214 -83583823 + MTC-int LTR MaLR 8 1170 -622 5 1088 522 0 0 0 chr6 65933541 65933599 -83583438 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1088 246 302 40 20 chr6 65934049 65934164 -83582873 - B1F2 SINE Alu -30 119 1 5 1088 442 271 24 41 chr6 65934164 65934249 -83582788 - B4 SINE B4 -207 85 3 6 1088 252 334 35 0 chr6 65934840 65934930 -83582107 + MLT1G3 LTR MaLR 10 99 -456 6 1088 759 327 96 24 chr6 65934952 65935378 -83581659 - MLT1D LTR MaLR 0 505 49 6 1088 264 267 119 48 chr6 65935477 65935603 -83581434 + MLT1G3 LTR MaLR 293 427 -168 6 1088 849 326 78 51 chr6 65935688 65936060 -83580977 + MLT1G3 LTR MaLR 202 583 -12 6 1088 305 327 130 9 chr6 65936919 65937027 -83580010 - RSINE1 SINE B4 -2 163 43 6 1088 261 0 0 0 chr6 65937347 65937376 -83579661 + (TA)n Simple_repeat Simple_repeat 2 30 0 6 1088 238 342 82 0 chr6 65937864 65938010 -83579027 - L1M5 LINE L1 -319 5921 5764 6 1088 280 286 97 21 chr6 65939105 65939198 -83577839 + MTEa LTR MaLR 178 286 -93 6 1088 653 147 29 0 chr6 65939635 65939737 -83577300 - U6 snRNA snRNA -2 105 1 6 1088 605 256 22 0 chr6 65940527 65940664 -83576373 + B1_Mur1 SINE Alu 2 141 -8 6 1088 1296 236 98 10 chr6 65941171 65941466 -83575571 - ORR1D2 LTR MaLR -10 360 40 6 1088 402 290 32 8 chr6 65941510 65941635 -83575402 - B1F SINE Alu -15 134 7 6 1088 21 0 0 0 chr6 65942526 65942547 -83574490 + AT_rich Low_complexity Low_complexity 1 21 0 6 1088 8995 9 0 0 chr6 65942558 65944161 -83572876 - L1Md_T LINE L1 0 6582 4980 6 1088 600 309 97 8 chr6 65944377 65944864 -83572173 - L1M3 LINE L1 -773 5367 4838 6 1088 1107 280 45 45 chr6 65944875 65945185 -83571852 + MTD LTR MaLR 21 330 -89 6 1088 318 307 42 18 chr6 65945226 65945392 -83571645 - L1M3 LINE L1 -1296 4847 4678 6 1088 886 145 6 6 chr6 65945402 65945569 -83571468 + CT-rich Low_complexity Low_complexity 2 168 0 6 1088 2666 88 110 9 chr6 65945809 65946244 -83570793 + RLTR44C LTR ERVK 1 479 -23 6 1088 689 135 28 14 chr6 65946592 65946735 -83570302 + L1_Mus4 LINE L1 6490 6634 -2 6 1088 21 71 0 0 chr6 65947079 65947121 -83569916 + AT_rich Low_complexity Low_complexity 1 42 0 6 1088 1464 281 56 26 chr6 65947292 65947830 -83569207 - Lx7 LINE L1 -346 7350 6797 6 1088 303 256 33 0 chr6 65947844 65947934 -83569103 - Lx9 LINE L1 -360 7284 7192 6 1088 518 253 0 26 chr6 65947948 65948102 -83568935 - L1_Mur3 LINE L1 -1455 4425 4276 6 1088 405 90 0 0 chr6 65948113 65948180 -83568857 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1088 1012 239 21 0 chr6 65948191 65948476 -83568561 - L1_Mur3 LINE L1 -1598 4282 3992 6 1088 1285 174 105 17 chr6 65948562 65948913 -83568124 - L1_Mur3 LINE L1 -2761 3116 2735 6 1088 4419 173 62 38 chr6 65948909 65949985 -83567052 - L1_Mur3 LINE L1 -3488 2392 1273 6 1088 2723 174 31 10 chr6 65949985 65950502 -83566535 + RLTR11A LTR ERVK 1 528 0 6 1088 4419 194 29 139 chr6 65950502 65950984 -83566053 - L1_Mur3 LINE L1 -4608 1272 871 6 1088 1663 236 44 81 chr6 65951521 65952221 -83564816 - L1_Mur3 LINE L1 -6392 1320 647 6 1088 650 244 12 0 chr6 65952208 65952368 -83564669 - L1_Mur3 LINE L1 -7260 452 291 6 1088 477 0 0 0 chr6 65952726 65952779 -83564258 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1088 711 33 0 0 chr6 65952779 65952868 -83564169 + (GA)n Simple_repeat Simple_repeat 2 91 0 6 1088 225 0 0 0 chr6 65953869 65953894 -83563143 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1088 3259 106 9 13 chr6 65954416 65954864 -83562173 - RLTR41 LTR ERV1 0 446 1 6 1088 3257 192 33 37 chr6 65955211 65955856 -83561181 + RLTR26 LTR ERVK 1 642 0 6 1088 225 59 19 56 chr6 65955944 65955998 -83561039 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 6 1088 1136 76 0 7 chr6 65955998 65956144 -83560893 - B1_Mus1 SINE Alu -1 147 3 6 1088 192 280 26 39 chr6 65957926 65958004 -83559033 + MIRb SINE MIR 112 188 -80 6 1088 264 327 37 46 chr6 65958886 65958995 -83558042 - B4A SINE B4 -14 278 171 6 1088 703 319 38 4 chr6 65959312 65959576 -83557461 + Tigger5 DNA MER2_type 2133 2405 -1 6 1088 203 0 37 0 chr6 65960296 65960323 -83556714 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 6 1088 1426 209 77 8 chr6 65961651 65962004 -83555033 - ORR1C1 LTR MaLR 0 378 2 6 1088 202 247 61 51 chr6 65962392 65962490 -83554547 + MIR3 SINE MIR 92 190 -18 6 1088 499 366 30 12 chr6 65963526 65963609 -83553428 + B4 SINE B4 4 89 -203 6 1088 254 402 10 0 chr6 65963609 65963706 -83553331 + PB1D10 SINE Alu 1 98 -19 6 1088 253 299 127 51 chr6 65964208 65964483 -83552554 - Zaphod DNA Tip100 -3204 827 532 6 1088 246 346 136 45 chr6 65964500 65964742 -83552295 + MLT1A0 LTR MaLR 1 264 -101 6 1088 228 339 224 40 chr6 65964819 65965194 -83551843 - Zaphod DNA Tip100 -3523 508 65 6 1088 252 0 0 0 chr6 65965213 65965241 -83551796 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1088 369 109 0 0 chr6 65965334 65965389 -83551648 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 6 1088 5593 60 3 17 chr6 65966010 65966779 -83550258 + L1Md_F2 LINE L1 5815 6560 -22 6 1088 525 236 86 49 chr6 65967264 65967450 -83549587 - B3A SINE B2 0 198 6 6 1088 1071 189 31 0 chr6 65968757 65968984 -83548053 + Lx9 LINE L1 7225 7458 -186 6 1088 225 94 0 0 chr6 65968987 65969019 -83548018 + (TA)n Simple_repeat Simple_repeat 1 32 0 6 1088 525 284 39 82 chr6 65969029 65969265 -83547772 + MLT1D LTR MaLR 214 521 -106 6 1088 262 310 56 0 chr6 65969265 65969336 -83547701 - ID4_ SINE ID -7 76 2 6 1088 474 329 4 110 chr6 65969336 65969439 -83547598 + MLT1D LTR MaLR 522 625 -2 6 1088 249 108 0 0 chr6 65969745 65969782 -83547255 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1088 20212 55 9 2 chr6 65969800 65973250 -83543787 - L1Md_F2 LINE L1 -3 6579 3117 6 1088 1522 108 355 28 chr6 65974909 65975233 -83541804 - RMER6B LTR ERVK -31 430 1 6 1088 2779 241 135 17 chr6 65975547 65976535 -83540502 - Lx9 LINE L1 -6 7638 6534 6 1088 630 287 54 158 chr6 65976596 65976969 -83540068 - MTE2a LTR MaLR -43 336 3 6 1088 898 174 147 10 chr6 65976979 65977177 -83539860 - URR1A DNA MER1_type 0 226 2 6 1088 703 254 6 61 chr6 65977180 65977360 -83539677 + B3A SINE B2 5 174 -24 6 1088 5823 215 47 69 chr6 65977784 65977887 -83539150 - Lx7 LINE L1 -52 7644 7542 6 1088 231 36 0 0 chr6 65977887 65977915 -83539122 + (TATAA)n Simple_repeat Simple_repeat 2 29 0 6 1088 5823 215 47 69 chr6 65977915 65979430 -83537607 - Lx7 LINE L1 -155 7541 6062 6 1088 6127 131 36 38 chr6 65979459 65979510 -83537527 - Lx2 LINE L1 -11 6986 6937 6 1088 1650 27 0 0 chr6 65979510 65979698 -83537339 - B2_Mm1a SINE B2 -5 188 1 6 1088 6127 131 36 38 chr6 65979698 65980704 -83536333 - Lx2 LINE L1 -61 6936 5931 6 1088 2188 152 56 5 chr6 65980707 65981125 -83535912 + L1_Mus1 LINE L1 5201 5642 -925 6 1088 6453 176 60 13 chr6 65981140 65982736 -83534301 - Lx7 LINE L1 -1683 6013 4342 6 1088 945 239 63 98 chr6 65982736 65983052 -83533985 + MTD LTR MaLR 115 419 0 6 1088 334 298 47 6 chr6 65983055 65983227 -83533810 - L1M2 LINE L1 -658 5633 5455 6 1088 1097 196 199 11 chr6 65984489 65984860 -83532177 + RLTR11A2 LTR ERVK 1 441 -86 6 1088 1489 316 71 12 chr6 65984880 65985623 -83531414 - Lx8 LINE L1 -409 7064 6278 6 1088 14726 23 0 0 chr6 65988097 65989901 -83527136 + L1Md_T LINE L1 3783 5586 -297 6 1088 8985 7 0 0 chr6 65989901 65990897 -83526140 + L1Md_T LINE L1 5587 6582 0 6 1088 315 0 0 0 chr6 65991508 65991543 -83525494 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 1088 29714 105 32 23 chr6 65991543 65998202 -83518835 - Lx3_Mus LINE L1 -21 6988 5 6 1088 251 130 19 0 chr6 65998290 65998344 -83518693 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1088 23 54 0 0 chr6 65998396 65998433 -83518604 + AT_rich Low_complexity Low_complexity 1 37 0 6 1088 663 265 34 7 chr6 65998457 65998605 -83518432 + B3 SINE B2 1 152 -64 6 1088 53 63 0 0 chr6 65999415 65999510 -83517527 + AT_rich Low_complexity Low_complexity 1 95 0 6 1088 241 379 33 44 chr6 66001535 66001717 -83515320 - LTR33A_ LTR ERVL -335 196 17 1 1088 393 58 0 0 chr6 66001892 66001944 -83515093 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1088 186 43 0 0 chr6 66001952 66001975 -83515062 + (CTAG)n Simple_repeat Simple_repeat 4 26 0 3 1088 256 324 19 84 chr6 66002593 66002748 -83514289 + RLTR14 LTR ERV1 238 382 0 4 1088 282 125 0 0 chr6 66002749 66002789 -83514248 - Lx6 LINE L1 -975 6485 6446 5 1088 25 31 0 0 chr6 66003070 66003102 -83513935 + AT_rich Low_complexity Low_complexity 1 32 0 6 1088 204 40 0 0 chr6 66003326 66003351 -83513686 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1088 324 155 55 27 chr6 66003744 66003817 -83513220 - B1_Mur3 SINE Alu 0 149 75 8 1088 1094 229 5 9 chr6 66004448 66004664 -83512373 - B3 SINE B2 -1 215 1 9 1088 3744 93 0 0 chr6 66004877 66005380 -83511657 + L1_Mus1 LINE L1 6065 6567 0 1 1088 38 61 0 0 chr6 66005478 66005544 -83511493 + AT_rich Low_complexity Low_complexity 1 66 0 1 1088 875 245 53 19 chr6 66005732 66005940 -83511097 - B3 SINE B2 0 216 2 1 1088 198 0 0 0 chr6 66006411 66006433 -83510604 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1088 290 75 0 36 chr6 66006989 66007044 -83509993 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 1 1088 27 49 0 0 chr6 66007079 66007120 -83509917 + AT_rich Low_complexity Low_complexity 1 41 0 1 1088 213 351 0 0 chr6 66007783 66007840 -83509197 + ID SINE ID 32 88 -136 1 1088 3903 75 2 8 chr6 66008521 66009048 -83507989 - L1Md_F2 LINE L1 -13 6569 6046 1 1088 924 119 0 13 chr6 66009765 66009918 -83507119 + Lx4A LINE L1 6329 6479 -579 1 1088 1707 229 112 6 chr6 66009916 66010390 -83506647 - Lx2B LINE L1 -3 6997 6474 1 1088 3760 147 5 0 chr6 66010391 66010975 -83506062 + Lx4A LINE L1 6465 7051 -7 1 1088 1472 239 88 24 chr6 66010981 66011476 -83505561 + RLTR20A LTR ERVK 24 544 -33 2 1088 226 225 0 0 chr6 66011507 66011547 -83505490 + (ATG)n Simple_repeat Simple_repeat 3 42 0 2 1088 4469 144 8 20 chr6 66011668 66012432 -83504605 - RMER6A LTR ERVK 0 756 2 2 1088 770 75 0 0 chr6 66012878 66012984 -83504053 - L1_Mus1 LINE L1 -515 6052 5947 2 1088 3961 76 0 6 chr6 66012984 66013498 -83503539 + L1_Mus1 LINE L1 6055 6565 -2 2 1088 1048 231 200 66 chr6 66013640 66014140 -83502897 - RMER2 LTR ERV1 0 567 1 2 1088 592 287 55 0 chr6 66014446 66014718 -83502319 + L1MB5 LINE L1 5539 5825 -349 2 1088 272 299 0 0 chr6 66015231 66015298 -83501739 + MTD LTR MaLR 264 330 -89 2 1088 1038 272 23 87 chr6 66015331 66015722 -83501315 + ORR1D1 LTR MaLR 9 374 0 2 1088 254 236 18 0 chr6 66015726 66015781 -83501256 + MTD LTR MaLR 364 419 0 2 1088 1711 260 80 24 chr6 66015785 66016325 -83500712 - MTE2b-int LTR MaLR -1009 571 2 2 1088 409 188 22 34 chr6 66016324 66016429 -83500608 - MTE2b LTR MaLR -2 377 275 2 1088 422 318 75 90 chr6 66016492 66016969 -83500068 - L1MEg LINE L1 -4538 1546 1077 2 1088 470 282 22 60 chr6 66017653 66017984 -83499053 - L1MA4 LINE L1 -385 5915 5596 3 1088 1315 91 27 0 chr6 66018111 66018298 -83498739 - B2_Mm1a SINE B2 0 193 2 3 1088 289 293 52 22 chr6 66018520 66018656 -83498381 - L1M2 LINE L1 -576 5607 5468 3 1088 262 284 42 0 chr6 66018672 66018767 -83498270 - L1_Mm LINE L1 -2090 3793 3695 3 1088 272 292 10 82 chr6 66019057 66019251 -83497786 - L1M2 LINE L1 -2417 3726 3547 3 1088 36187 44 0 3 chr6 66019954 66026345 -83490692 - L1Md_T LINE L1 0 6585 120 3 1088 547 242 47 31 chr6 66029841 66029969 -83487068 - B3 SINE B2 -13 203 74 3 1088 24 32 0 0 chr6 66030110 66030141 -83486896 + AT_rich Low_complexity Low_complexity 1 31 0 3 1088 26 74 0 0 chr6 66030800 66030854 -83486183 + AT_rich Low_complexity Low_complexity 1 54 0 3 1088 415 200 0 0 chr6 66031566 66031636 -83485401 - RSINE1 SINE B4 -83 82 13 3 1088 13301 18 0 0 chr6 66033257 66035541 -83481496 - L1Md_T LINE L1 -1 6581 4297 3 1088 184 263 126 39 chr6 66035714 66035817 -83481220 - MIR SINE MIR -86 176 65 4 1088 1018 249 88 36 chr6 66036353 66036682 -83480355 - Lx7 LINE L1 -835 6861 6516 4 1088 256 296 37 9 chr6 66036713 66036822 -83480215 + Lx7 LINE L1 7569 7680 -16 4 1088 441 0 0 0 chr6 66037916 66037965 -83479072 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 4 1088 225 347 50 10 chr6 66038375 66038403 -83478634 - ID_B1 SINE B4 -119 105 3 4 1088 250 300 14 14 chr6 66038403 66038474 -83478563 - ID4_ SINE ID -10 73 3 4 1088 398 377 49 54 chr6 66038771 66039141 -83477896 + MLT1D LTR MaLR 136 503 -2 4 1088 1480 264 59 32 chr6 66039820 66040348 -83476689 + Lx7 LINE L1 6817 7358 -338 4 1088 331 325 136 12 chr6 66040560 66040818 -83476219 + MER57E1 LTR ERV1 56 345 -27 4 1088 275 319 14 0 chr6 66041480 66041552 -83475485 + LTR16C LTR ERVL 174 246 -243 4 1088 324 0 0 0 chr6 66041679 66041715 -83475322 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1088 644 261 130 0 chr6 66042025 66042075 -83474962 - B3 SINE B2 -6 210 159 5 1088 495 0 0 0 chr6 66042075 66042130 -83474907 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1088 644 261 130 0 chr6 66042130 66042263 -83474774 - B3 SINE B2 -58 158 5 5 1088 252 306 32 65 chr6 66042307 66042461 -83474576 + L2c LINE L2 3238 3386 -1 5 1088 906 94 133 12 chr6 66042726 66042899 -83474138 + L1_Mus3 LINE L1 6369 6562 -76 5 1088 7726 48 3 1 chr6 66043233 66044559 -83472478 - L1Md_F2 LINE L1 -1 6581 5252 5 1088 15611 46 1 31 chr6 66044557 66047493 -83469544 - L1Md_T LINE L1 -1 6581 3746 5 1088 5773 102 3 1 chr6 66047502 66049256 -83467781 - L1Md_T LINE L1 -3768 2115 359 5 1088 523 265 0 8 chr6 66049871 66049989 -83467048 - RSINE1 SINE B4 -40 125 9 5 1088 449 220 110 0 chr6 66052251 66052351 -83464686 + B1_Mus1 SINE Alu 28 138 -10 5 1088 312 293 200 0 chr6 66052397 66052537 -83464500 + HAL1-3A_ME LINE L1 2284 2451 -407 5 1088 243 181 60 12 chr6 66052537 66052621 -83464416 + (TA)n Simple_repeat Simple_repeat 2 89 0 6 1088 1188 339 6 30 chr6 66052622 66053157 -83463880 + Lx8 LINE L1 6176 6697 -776 6 1088 1914 229 46 2 chr6 66053166 66053560 -83463477 - MTD LTR MaLR -8 411 1 6 1088 941 300 50 29 chr6 66053576 66053957 -83463080 + Lx9 LINE L1 6857 7245 -399 6 1088 407 323 0 0 chr6 66054087 66054211 -83462826 + Lx9 LINE L1 7254 7377 -267 6 1088 21 36 0 0 chr6 66054823 66054851 -83462186 + AT_rich Low_complexity Low_complexity 1 28 0 6 1088 607 57 23 0 chr6 66055013 66055101 -83461936 + (GA)n Simple_repeat Simple_repeat 2 91 0 6 1088 706 97 0 31 chr6 66055328 66055456 -83461581 + L1_Mus1 LINE L1 6444 6567 0 6 1088 3069 234 46 5 chr6 66056331 66057198 -83459839 - RMER1B Other Other 0 1066 81 6 1088 1797 289 33 13 chr6 66057268 66057973 -83459064 - RMER1A Other Other -526 504 5 6 1088 1244 218 163 6 chr6 66057982 66058314 -83458723 - RMER1B Other Other -680 386 3 6 1088 258 233 150 0 chr6 66058649 66058709 -83458328 - ID4_ SINE ID -10 73 5 6 1088 297 306 3 12 chr6 66058731 66058829 -83458208 - B1F SINE Alu -6 143 49 7 1088 2157 212 36 71 chr6 66059267 66059819 -83457218 - MT2A LTR ERVL 0 533 1 7 1089 892 49 16 0 chr6 66060563 66060685 -83456352 + (TC)n Simple_repeat Simple_repeat 2 125 0 7 1089 600 50 0 0 chr6 66060947 66061027 -83456010 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 1089 270 0 0 0 chr6 66061027 66061056 -83455981 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1089 511 299 0 38 chr6 66061056 66061188 -83455849 - RSINE1 SINE B4 -32 133 7 7 1089 339 277 130 8 chr6 66061381 66061512 -83455525 + B1F1 SINE Alu 3 149 0 7 1089 3472 23 2 0 chr6 66061751 66062146 -83454891 + MTA_Mm LTR MaLR 1 396 0 7 1089 1409 78 237 0 chr6 66062605 66062896 -83454141 - L1_Mus3 LINE L1 -447 6191 5832 7 1089 2904 99 14 2 chr6 66062900 66063315 -83453722 + L1_Mus3 LINE L1 6210 6629 -9 7 1089 438 291 74 35 chr6 66063327 66063530 -83453507 + B3 SINE B2 1 211 -5 7 1089 482 234 9 0 chr6 66064388 66064499 -83452538 + Lx8 LINE L1 7028 7139 -334 8 1089 729 34 0 0 chr6 66064678 66064766 -83452271 + (TC)n Simple_repeat Simple_repeat 1 88 0 8 1089 882 166 162 25 chr6 66065790 66065988 -83451049 - URR1B DNA MER1_type 0 225 1 8 1089 719 163 289 0 chr6 66066109 66066275 -83450762 + B3 SINE B2 3 216 0 8 1089 24 77 0 0 chr6 66066590 66066642 -83450395 + AT_rich Low_complexity Low_complexity 1 52 0 8 1089 393 22 0 0 chr6 66066976 66067022 -83450015 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 8 1089 555 16 0 0 chr6 66067023 66067087 -83449950 + (TC)n Simple_repeat Simple_repeat 2 65 0 8 1089 1263 94 0 0 chr6 66068209 66068389 -83448648 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 1089 733 178 8 23 chr6 66069217 66069349 -83447688 - B3 SINE B2 -86 130 1 8 1089 23 33 0 0 chr6 66069563 66069593 -83447444 + AT_rich Low_complexity Low_complexity 1 30 0 8 1089 21 0 0 0 chr6 66069781 66069802 -83447235 + AT_rich Low_complexity Low_complexity 1 21 0 9 1089 350 288 231 0 chr6 66071420 66071580 -83445457 - MTEa LTR MaLR -177 202 6 9 1089 22 0 0 0 chr6 66072494 66072516 -83444521 + AT_rich Low_complexity Low_complexity 1 22 0 9 1089 4304 138 10 3 chr6 66073231 66073919 -83443118 - Lx2B LINE L1 -3 6997 6305 9 1089 6678 101 1 1 chr6 66075532 66076505 -83440532 - L1_Mus4 LINE L1 -10 6626 5654 9 1089 4808 135 9 25 chr6 66076498 66077525 -83439512 + L1Md_A LINE L1 410 1417 -4466 9 1089 7501 56 11 0 chr6 66077525 66078484 -83438553 + L1Md_F3 LINE L1 5614 6583 -1 9 1089 21716 161 19 13 chr6 66078484 66083685 -83433352 - L1VL4 LINE L1 -215 5668 436 9 1089 2164 277 121 37 chr6 66083694 66084684 -83432353 - Lx6 LINE L1 -177 7283 5944 9 1089 963 135 6 6 chr6 66084683 66084854 -83432183 + L1_Mur3 LINE L1 4644 4814 -1066 9 1089 1229 33 0 0 chr6 66085809 66085962 -83431075 - L1Md_A LINE L1 0 6582 6430 1 1089 7263 89 18 14 chr6 66086029 66087861 -83429176 + L1Md_F LINE L1 416 2255 -3628 1 1089 1020 239 70 24 chr6 66087921 66088208 -83428829 + RLTR45-int LTR ERVK 2454 2753 -4653 1 1089 3180 117 24 4 chr6 66088254 66088753 -83428284 + RLTR45-int LTR ERVK 3761 4269 -3137 1 1089 4730 134 71 76 chr6 66088757 66089797 -83427240 + RLTR45-int LTR ERVK 4873 5907 -1337 1 1089 911 156 15 19 chr6 66089817 66090027 -83427010 + ETnERV2-int LTR ERVK 5907 6071 -1173 1 1089 728 252 22 16 chr6 66090016 66090350 -83426687 + ETnERV2-int LTR ERVK 7506 7748 -469 1 1089 1528 169 0 30 chr6 66090403 66090666 -83426371 + ETnERV2-int LTR ERVK 6495 6749 -657 1 1089 9502 71 3 0 chr6 66090669 66091970 -83425067 + L1Md_F2 LINE L1 4281 5585 -298 1 1089 7367 80 2 9 chr6 66091971 66092970 -83424067 + L1Md_F2 LINE L1 5587 6578 -4 1 1089 243 0 0 0 chr6 66093083 66093110 -83423927 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1089 486 0 0 0 chr6 66095000 66095054 -83421983 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1089 353 291 127 55 chr6 66095124 66095470 -83421567 + L1MD LINE L1 4534 4904 -1242 1 1089 294 339 171 18 chr6 66095959 66096292 -83420745 - L2 LINE L2 -1904 1515 1132 1 1089 519 17 0 0 chr6 66096608 66096668 -83420369 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1089 235 303 117 49 chr6 66096674 66096837 -83420200 + RLTR20D LTR ERVK 58 231 -337 1 1089 224 222 10 48 chr6 66097296 66097400 -83419637 + A-rich Low_complexity Low_complexity 1 100 0 1 1089 708 288 0 0 chr6 66098036 66098199 -83418838 + RSINE1 SINE B4 3 165 0 1 1089 701 259 7 26 chr6 66098796 66098947 -83418090 - RSINE1 SINE B4 0 165 18 1 1089 483 60 0 0 chr6 66098952 66099019 -83418018 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1089 653 279 7 0 chr6 66099022 66099162 -83417875 - RSINE1 SINE B4 -21 144 4 1 1089 301 314 178 10 chr6 66099427 66099720 -83417317 + L1MC LINE L1 3551 3892 -2254 1 1089 196 212 15 15 chr6 66101237 66101304 -83415733 + GA-rich Low_complexity Low_complexity 2 68 0 1 1089 324 0 0 0 chr6 66101610 66101646 -83415391 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1089 300 152 0 0 chr6 66101646 66101712 -83415325 + GA-rich Low_complexity Low_complexity 1 66 0 1 1089 267 54 0 0 chr6 66101741 66101778 -83415259 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1089 23 33 0 0 chr6 66102400 66102430 -83414607 + AT_rich Low_complexity Low_complexity 1 30 0 1 1089 280 316 40 0 chr6 66104125 66104201 -83412836 - MER5A DNA MER1_type -109 80 2 1 1089 245 299 0 0 chr6 66104697 66104764 -83412273 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1089 755 283 24 38 chr6 66104774 66104987 -83412050 - B4 SINE B4 0 292 83 1 1089 1699 255 63 45 chr6 66105493 66105985 -83411052 - RMER19C LTR ERVK -2 609 109 1 1089 918 261 9 0 chr6 66106240 66106451 -83410586 - B3 SINE B2 0 216 4 1 1089 225 154 0 0 chr6 66107605 66107644 -83409393 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 1 1089 23 0 0 0 chr6 66108640 66108663 -83408374 + AT_rich Low_complexity Low_complexity 1 23 0 1 1089 551 313 116 36 chr6 66109793 66109937 -83407100 + Charlie4a DNA MER1_type 20 158 -350 1 1089 405 0 0 0 chr6 66109937 66109982 -83407055 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 1 1089 551 313 116 36 chr6 66109982 66110198 -83406839 + Charlie4a DNA MER1_type 159 409 -99 1 1089 22 0 0 0 chr6 66111251 66111273 -83405764 + AT_rich Low_complexity Low_complexity 1 22 0 1 1089 1059 161 166 0 chr6 66111372 66111565 -83405472 - URR1B DNA MER1_type 0 225 1 1 1089 1050 65 52 0 chr6 66111878 66112032 -83405005 - L1_Mus3 LINE L1 -1 6637 6476 1 1089 336 309 179 14 chr6 66112787 66113010 -83404027 - Tigger7 DNA MER2_type -9 2482 2223 1 1089 549 366 85 30 chr6 66112995 66113361 -83403676 - Tigger7 DNA MER2_type -2080 411 26 1 1089 375 37 37 0 chr6 66113845 66113899 -83403138 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1089 410 138 73 0 chr6 66113902 66114011 -83403026 + GA-rich Low_complexity Low_complexity 5 121 0 1 1089 885 89 0 0 chr6 66114019 66114143 -83402894 + (CAAGG)n Simple_repeat Simple_repeat 1 124 0 1 1089 491 227 30 52 chr6 66114158 66114281 -83402756 - RMER15 LTR ERVL -116 459 340 1 1089 2471 53 28 0 chr6 66114281 66114599 -83402438 + IAPLTR2b LTR ERVK 1 327 0 1 1089 1817 138 122 69 chr6 66114621 66115072 -83401965 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1089 1426 62 0 35 chr6 66116067 66116268 -83400769 - MTB LTR MaLR -4 396 203 1 1089 468 0 0 0 chr6 66116816 66116868 -83400169 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1089 299 262 127 27 chr6 66117104 66117214 -83399823 - B1F SINE Alu -1 148 28 1 1089 505 317 0 16 chr6 66117893 66118015 -83399022 - RSINE1 SINE B4 0 165 46 1 1089 1197 55 7 0 chr6 66118479 66118625 -83398412 - B1_Mus2 SINE Alu 0 147 1 1 1089 204 167 0 0 chr6 66119795 66119843 -83397194 + A-rich Low_complexity Low_complexity 1 48 0 1 1089 432 37 0 0 chr6 66119889 66119943 -83397094 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 1 1089 1100 219 29 58 chr6 66120198 66120665 -83396372 + RLTR20C LTR ERVK 45 542 -9 1 1089 306 271 132 55 chr6 66120672 66120891 -83396146 - BLACKJACK DNA AcHobo -1805 1139 904 1 1089 304 318 47 0 chr6 66121013 66121098 -83395939 - RSINE1 SINE B4 -33 132 44 1 1089 314 23 0 23 chr6 66121545 66121589 -83395448 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1089 405 274 75 0 chr6 66121596 66121702 -83395335 - ID_B1 SINE B4 -17 207 94 1 1089 212 54 54 0 chr6 66121913 66121950 -83395087 + (TTGG)n Simple_repeat Simple_repeat 1 39 0 1 1089 1255 34 0 0 chr6 66121952 66122099 -83394938 - B1_Mm SINE Alu 0 147 1 1 1089 25 0 0 0 chr6 66122211 66122236 -83394801 + AT_rich Low_complexity Low_complexity 1 25 0 1 1089 642 259 25 174 chr6 66123721 66123898 -83393139 + B4A SINE B4 2 136 -156 1 1089 6066 30 4 0 chr6 66123898 66124608 -83392429 - L1Md_F2 LINE L1 -12 6570 5858 1 1089 642 259 25 174 chr6 66124608 66124711 -83392326 + B4A SINE B4 137 240 -52 1 1089 263 325 0 25 chr6 66124713 66124792 -83392245 + B3 SINE B2 24 100 -116 1 1089 3900 164 123 40 chr6 66124805 66125627 -83391410 - RMER19B LTR ERVK -12 890 1 1 1089 390 237 105 0 chr6 66125627 66125736 -83391301 + B3A SINE B2 94 211 -5 1 1089 254 278 0 0 chr6 66125723 66125777 -83391260 + B4A SINE B4 214 267 -25 1 1089 638 85 11 0 chr6 66125802 66125896 -83391141 + (TC)n Simple_repeat Simple_repeat 2 96 0 1 1089 240 182 146 0 chr6 66125906 66125961 -83391076 + RMER19A LTR ERVK 63 125 -612 1 1089 2009 95 71 3 chr6 66125978 66126273 -83390764 + Lx LINE L1 6332 6646 -8 1 1089 261 0 0 0 chr6 66127080 66127109 -83389928 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1089 4483 27 0 0 chr6 66127353 66127868 -83389169 + L1Md_T LINE L1 6068 6582 0 1 1089 211 184 0 0 chr6 66127928 66127966 -83389071 + CT-rich Low_complexity Low_complexity 2 39 0 1 1089 1660 134 131 0 chr6 66128323 66128651 -83388386 - MusHAL1 LINE L1 -1028 1684 1314 1 1089 1637 141 111 0 chr6 66128657 66128990 -83388047 + Lx2A1 LINE L1 6639 7008 0 1 1089 1141 108 7 7 chr6 66128990 66129269 -83387768 + (GAAA)n Simple_repeat Simple_repeat 1 279 0 1 1089 263 177 16 0 chr6 66129753 66129815 -83387222 + CT-rich Low_complexity Low_complexity 3 65 0 1 1089 3876 78 0 0 chr6 66130021 66130546 -83386491 - L1Md_F2 LINE L1 -439 6143 5619 1 1089 1543 64 10 0 chr6 66130547 66130751 -83386286 + L1_Mus1 LINE L1 6362 6567 0 1 1089 278 295 102 20 chr6 66130903 66131100 -83385937 + L2 LINE L2 2290 2502 -917 1 1089 317 259 75 91 chr6 66132258 66132291 -83384746 - B2_Mm1a SINE B2 -7 186 152 1 1089 2495 169 16 2 chr6 66132291 66132743 -83384294 - RMER6B LTR ERVK -3 458 1 1 1089 581 259 75 91 chr6 66132743 66132896 -83384141 - B3 SINE B2 -42 151 3 1 1089 598 196 62 0 chr6 66132924 66133036 -83384001 - PB1D9 SINE Alu 0 120 2 1 1089 364 301 97 0 chr6 66133438 66133541 -83383496 + PB1D7 SINE Alu 1 113 -7 1 1089 357 294 118 67 chr6 66133652 66133917 -83383120 + MTEb LTR MaLR 2 282 -97 1 1089 432 0 0 0 chr6 66133936 66133984 -83383053 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1089 558 86 0 0 chr6 66134999 66135080 -83381957 + (TCTCCC)n Simple_repeat Simple_repeat 4 84 0 1 1089 228 35 0 0 chr6 66135080 66135109 -83381928 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1089 212 0 36 0 chr6 66135831 66135859 -83381178 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1089 180 0 0 0 chr6 66135861 66135881 -83381156 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 1 1089 267 31 0 0 chr6 66136996 66137028 -83380009 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1089 890 236 9 28 chr6 66137847 66138061 -83378976 + B3 SINE B2 1 210 -6 1 1089 985 250 0 5 chr6 66138098 66138311 -83378726 - B3 SINE B2 0 216 5 1 1089 408 180 57 57 chr6 66139021 66139127 -83377910 - B1_Mur1 SINE Alu 0 149 44 1 1089 202 164 18 18 chr6 66139320 66139376 -83377661 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1089 32070 78 5 0 chr6 66139388 66145574 -83371463 - L1Md_F2 LINE L1 -3 6579 366 1 1089 682 203 50 60 chr6 66145648 66145847 -83371190 - B3A SINE B2 0 198 2 1 1089 562 301 7 7 chr6 66146973 66147127 -83369910 - RSINE1 SINE B4 -1 164 11 1 1089 428 215 9 9 chr6 66147196 66147304 -83369733 - Lx5 LINE L1 -38 7012 6905 1 1089 235 231 0 0 chr6 66147300 66147352 -83369685 + Lx5 LINE L1 6828 6879 -171 1 1089 291 352 97 18 chr6 66147373 66147538 -83369499 + MER20 DNA MER1_type 17 194 -25 1 1089 381 22 0 0 chr6 66148478 66148524 -83368513 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1089 21 0 0 0 chr6 66149579 66149600 -83367437 + AT_rich Low_complexity Low_complexity 1 21 0 1 1089 1228 236 37 25 chr6 66151327 66151653 -83365384 - MTD-int LTR MaLR -927 331 2 1 1089 999 190 77 40 chr6 66151655 66151903 -83365134 - MTD LTR MaLR 0 419 159 1 1089 300 316 94 19 chr6 66152021 66152234 -83364803 + L1MB2 LINE L1 5881 6109 -62 1 1089 475 162 0 0 chr6 66152252 66152326 -83364711 + ORR1C1 LTR MaLR 1 74 -304 1 1089 368 242 0 8 chr6 66152443 66152535 -83364502 + L1M3 LINE L1 5673 5759 -532 1 1089 24 0 0 0 chr6 66152657 66152681 -83364356 + AT_rich Low_complexity Low_complexity 1 24 0 1 1089 1229 254 103 18 chr6 66152693 66153034 -83364003 - MTE2b LTR MaLR -9 370 1 2 1089 839 269 34 23 chr6 66153277 66153613 -83363424 - MTE2b LTR MaLR 0 419 1 2 1089 2337 310 63 107 chr6 66153614 66154638 -83362399 - MTE2b-int LTR MaLR -1 1579 601 2 1089 459 101 0 0 chr6 66154743 66154822 -83362215 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1089 237 354 0 10 chr6 66155322 66155422 -83361615 - Lx7 LINE L1 -601 7095 6997 2 1089 314 287 106 37 chr6 66155475 66155663 -83361374 + Lx7 LINE L1 7112 7312 -384 2 1089 441 0 0 0 chr6 66155673 66155722 -83361315 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1089 790 106 15 0 chr6 66156254 66156386 -83360651 - L1_Mus3 LINE L1 -7 6631 6498 2 1089 225 231 0 19 chr6 66157553 66157606 -83359431 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 2 1089 187 333 0 0 chr6 66157702 66157768 -83359269 - MER5B DNA MER1_type -112 66 1 2 1089 240 262 107 45 chr6 66158590 66158702 -83358335 + ORR1A3-int LTR MaLR 1757 1875 -88 2 1089 321 263 13 0 chr6 66158734 66158810 -83358227 - MTE2a LTR MaLR -269 110 34 2 1089 1014 255 135 65 chr6 66158820 66159219 -83357818 - MTE-int LTR MaLR 0 1580 1154 2 1089 529 289 53 19 chr6 66159345 66159610 -83357427 + L1MB3 LINE L1 5857 6130 -53 2 1089 231 250 18 0 chr6 66159638 66159694 -83357343 + B3 SINE B2 153 209 -7 2 1089 207 0 0 0 chr6 66159805 66159828 -83357209 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 2 1089 609 52 0 0 chr6 66159828 66159904 -83357133 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 1089 3074 200 147 18 chr6 66160218 66160947 -83356090 + Lx5 LINE L1 6224 7046 -4 2 1089 353 335 92 37 chr6 66161488 66161705 -83355332 - ORR1E LTR MaLR -111 248 20 2 1089 1363 78 0 0 chr6 66161720 66161899 -83355138 + L1_Mus1 LINE L1 6388 6566 -1 2 1089 181 0 33 33 chr6 66161903 66161933 -83355104 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1089 458 351 0 0 chr6 66162234 66162365 -83354672 + RSINE1 SINE B4 31 161 -4 2 1089 264 309 73 0 chr6 66162359 66162495 -83354542 + MER53 DNA hAT 19 164 -29 2 1089 1059 222 86 37 chr6 66162954 66163396 -83353641 + RMER2 LTR ERV1 1 562 -5 2 1089 417 39 0 0 chr6 66163793 66163844 -83353193 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1089 1676 271 91 40 chr6 66163885 66164359 -83352678 - Lx9 LINE L1 -183 7461 6985 2 1089 186 43 0 0 chr6 66164359 66164382 -83352655 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1089 1676 271 91 40 chr6 66164382 66164611 -83352426 - Lx9 LINE L1 -660 6984 6723 2 1089 1151 82 0 0 chr6 66164614 66164760 -83352277 + B1_Mus2 SINE Alu 2 147 0 2 1089 194 0 0 37 chr6 66164765 66164792 -83352245 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2 1089 356 350 112 17 chr6 66165164 66165405 -83351632 + L1M5 LINE L1 5335 5598 -642 2 1089 1010 116 27 0 chr6 66165416 66165563 -83351474 + B2_Mm2 SINE B2 2 152 -43 2 1089 444 19 0 0 chr6 66165569 66165622 -83351415 + (CATA)n Simple_repeat Simple_repeat 2 54 0 2 1089 242 310 57 36 chr6 66165644 66165838 -83351199 + L1M5 LINE L1 5628 5825 -348 2 1089 508 267 188 35 chr6 66166972 66167174 -83349863 + B4A SINE B4 6 238 -54 2 1089 951 26 0 0 chr6 66167240 66167354 -83349683 + (GA)n Simple_repeat Simple_repeat 2 115 0 2 1089 261 0 0 0 chr6 66168528 66168557 -83348480 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1089 459 327 104 9 chr6 66168659 66168881 -83348156 - MER47B DNA MER2_type -174 244 2 2 1089 22 0 0 0 chr6 66170073 66170095 -83346942 + AT_rich Low_complexity Low_complexity 1 22 0 2 1089 240 284 11 69 chr6 66170685 66170772 -83346265 - B3 SINE B2 -108 108 27 2 1089 183 354 44 37 chr6 66173274 66173409 -83343628 + L2 LINE L2 2832 2967 -452 2 1089 357 265 287 12 chr6 66173686 66173850 -83343187 + RMER15 LTR ERVL 302 510 -65 2 1089 2605 306 71 15 chr6 66173915 66175043 -83341994 + RMER15-int LTR ERVL 26 1216 -3783 2 1089 204 97 0 0 chr6 66175052 66175083 -83341954 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1089 245 279 0 47 chr6 66175191 66175255 -83341782 - Charlie12 DNA MER1_type 0 2873 2813 2 1089 922 162 75 0 chr6 66175256 66175416 -83341621 - ORR1C1 LTR MaLR 0 378 207 2 1089 266 250 23 23 chr6 66175450 66175536 -83341501 - Charlie12 DNA MER1_type -1397 1476 1391 2 1089 951 224 40 30 chr6 66175540 66175742 -83341295 - B3 SINE B2 -6 210 7 2 1089 1090 266 78 78 chr6 66175801 66175866 -83341171 - Charlie12 DNA MER1_type -1587 1286 1231 2 1089 222 37 0 0 chr6 66175866 66175893 -83341144 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1089 1090 251 92 60 chr6 66175893 66176440 -83340597 - Charlie12 DNA MER1_type -1643 1230 627 2 1089 31 0 0 0 chr6 66177041 66177072 -83339965 + AT_rich Low_complexity Low_complexity 1 31 0 2 1089 1134 71 0 0 chr6 66177096 66177237 -83339800 - B1_Mus1 SINE Alu -6 142 2 2 1089 26 30 0 0 chr6 66177288 66177321 -83339716 + AT_rich Low_complexity Low_complexity 1 33 0 2 1089 32321 72 13 2 chr6 66177745 66182313 -83334724 - L1Md_F2 LINE L1 -14 6568 1970 2 1089 263 71 24 0 chr6 66182313 66182355 -83334682 + (TTG)n Simple_repeat Simple_repeat 3 45 0 2 1089 32321 66 10 2 chr6 66182355 66183870 -83333167 - L1Md_F2 LINE L1 -3914 1969 440 2 1089 257 220 209 52 chr6 66184319 66184434 -83332603 - MIRb SINE MIR 0 268 136 2 1089 233 0 62 0 chr6 66184905 66184937 -83332100 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1089 1931 182 68 18 chr6 66185601 66185999 -83331038 - MTC LTR MaLR -3 418 1 2 1089 255 31 0 0 chr6 66186325 66186357 -83330680 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1089 217 148 31 62 chr6 66186405 66186511 -83330526 + (CAGAGA)n Simple_repeat Simple_repeat 1 102 0 2 1089 477 204 7 13 chr6 66186809 66186958 -83330079 + GA-rich Low_complexity Low_complexity 2 149 0 2 1089 346 258 23 30 chr6 66186973 66187105 -83329932 + GA-rich Low_complexity Low_complexity 1 131 0 2 1089 1741 252 75 30 chr6 66187148 66187691 -83329346 - Lx7 LINE L1 -961 6735 6168 2 1089 3430 136 11 0 chr6 66187690 66188235 -83328802 + L1VL4 LINE L1 50 600 -5702 2 1089 14233 78 2 2 chr6 66188233 66190264 -83326773 - L1_Mm LINE L1 -1096 4787 2757 2 1089 409 138 0 0 chr6 66190263 66190328 -83326709 + L1Md_F2 LINE L1 5522 5586 -297 2 1089 7933 47 10 0 chr6 66190329 66191312 -83325725 + L1Md_F2 LINE L1 5588 6580 -2 2 136 15796 77 60 8 chr6 66191312 66194086 -83322951 + L1VL4 LINE L1 587 3503 -56 2 1090 1420 267 57 30 chr6 66194088 66194309 -83322728 - Lx7 LINE L1 -1516 6180 5950 2 1090 1938 172 24 5 chr6 66194309 66194682 -83322355 - RLTR14 LTR ERV1 0 382 3 2 1090 1420 267 57 30 chr6 66194682 66195035 -83322002 - Lx7 LINE L1 -1747 5949 5590 2 1090 905 196 179 59 chr6 66195064 66195421 -83321616 + RLTR9E LTR ERVK 1 400 -9 2 1090 14935 197 26 16 chr6 66195439 66200641 -83316396 + ETnERV2-int LTR ERVK 2 5909 -1497 2 1090 2983 57 38 0 chr6 66200641 66201012 -83316025 + IAPEY_LTR LTR ERVK 1 385 0 2 1090 14935 103 9 4 chr6 66201012 66201325 -83315712 + ETnERV2-int LTR ERVK 5910 6227 -1179 2 1090 6240 144 16 6 chr6 66201374 66202346 -83314691 + ETnERV2-int LTR ERVK 6222 7203 -203 2 1090 688 236 224 13 chr6 66202346 66202663 -83314374 + RLTR13D6 LTR ERVK 154 537 -365 2 1090 463 115 0 37 chr6 66202663 66202744 -83314293 + ETnERV2-int LTR ERVK 7329 7406 0 2 1090 928 199 194 39 chr6 66202753 66203098 -83313939 + RLTR9E LTR ERVK 6 411 -4 2 1090 238 142 14 117 chr6 66203099 66203184 -83313853 - Lx7 LINE L1 -715 5597 5493 2 1090 711 218 0 8 chr6 66203184 66203318 -83313719 + MT2A LTR ERVL 1 133 -400 2 1090 956 200 77 116 chr6 66203335 66203646 -83313391 + MT2A LTR ERVL 2 300 -233 2 1090 648 234 31 0 chr6 66203661 66203789 -83313248 - B3 SINE B2 -83 133 2 2 1090 1199 249 273 19 chr6 66205506 66205931 -83311106 + RMER15 LTR ERVL 31 563 -12 2 1090 2039 228 44 33 chr6 66206221 66206702 -83310335 - RMER19C LTR ERVK 0 611 126 2 1090 2050 232 39 25 chr6 66207095 66207612 -83309425 - RLTR20B3 LTR ERVK -33 544 21 2 1090 351 0 0 0 chr6 66207634 66207673 -83309364 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2 1090 1206 50 13 0 chr6 66207779 66207938 -83309099 - L1_Mus1 LINE L1 -1 6566 6406 2 1090 233 209 98 98 chr6 66209227 66209391 -83307646 + L1_Mur2 LINE L1 1848 2011 -3866 2 1090 273 263 25 62 chr6 66209404 66209485 -83307552 - RMER20B LTR ERVK -38 589 512 2 1090 406 218 112 8 chr6 66209503 66209628 -83307409 - RMER20B LTR ERVK -222 405 268 2 1090 441 289 10 126 chr6 66210230 66210436 -83306601 + B3A SINE B2 1 182 -16 2 1090 231 125 0 0 chr6 66210438 66210478 -83306559 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1090 276 53 0 0 chr6 66210478 66210516 -83306521 + (CTCA)n Simple_repeat Simple_repeat 3 40 0 2 1090 286 317 51 46 chr6 66210710 66210885 -83306152 - RLTR12B LTR ERVK -38 490 315 2 1090 818 262 35 31 chr6 66210964 66211224 -83305813 - RLTR11A2 LTR ERVK -266 261 1 2 1090 547 202 119 0 chr6 66212884 66212993 -83304044 + B3 SINE B2 2 123 -93 2 1090 23 33 0 0 chr6 66213039 66213069 -83303968 + AT_rich Low_complexity Low_complexity 1 30 0 2 1090 189 0 0 0 chr6 66213183 66213204 -83303833 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1090 532 191 187 27 chr6 66213206 66213329 -83303708 - B1_Mur2 SINE Alu 0 148 9 2 1090 2872 179 181 11 chr6 66214019 66214642 -83302395 + ORR1D1-int LTR MaLR 642 1370 0 2 1090 1322 207 38 144 chr6 66214642 66215059 -83301978 + ORR1D1 LTR MaLR 1 373 -1 2 1090 561 63 0 0 chr6 66215657 66215736 -83301301 - L1_Mus1 LINE L1 -236 6331 6253 2 1090 1484 66 0 0 chr6 66215736 66215933 -83301104 + L1Md_F2 LINE L1 6374 6570 -12 2 1090 533 324 88 0 chr6 66216090 66216238 -83300799 + RSINE1 SINE B4 3 163 -2 2 1090 342 0 0 0 chr6 66216238 66216276 -83300761 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1090 255 321 19 82 chr6 66216516 66216696 -83300341 - FAM SINE Alu -10 301 1 2 1090 476 267 83 0 chr6 66217456 66217576 -83299461 - RSINE1 SINE B4 -33 132 3 2 1090 522 0 0 0 chr6 66219029 66219087 -83297950 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 2 1090 495 186 18 0 chr6 66219111 66219224 -83297813 + Lx7 LINE L1 7578 7692 -4 2 1090 689 255 107 0 chr6 66219317 66219513 -83297524 + RMER1B Other Other 11 227 -839 2 1090 243 0 0 0 chr6 66219652 66219679 -83297358 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1090 243 0 0 0 chr6 66219733 66219760 -83297277 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1090 1421 289 48 20 chr6 66220522 66221012 -83296025 + MTE-int LTR MaLR 95 584 -786 2 1090 633 248 0 0 chr6 66221981 66222094 -83294943 + B3 SINE B2 1 113 -103 2 1090 318 301 120 0 chr6 66223993 66224126 -83292911 - B1F SINE Alu 0 149 1 2 1090 22 35 0 0 chr6 66224637 66224666 -83292371 + AT_rich Low_complexity Low_complexity 1 29 0 2 1090 378 345 53 111 chr6 66224770 66224959 -83292078 - ORR1E LTR MaLR -84 275 98 2 1090 397 284 237 21 chr6 66224973 66225284 -83291753 - MTE2a LTR MaLR -1 378 33 2 1090 5421 302 30 17 chr6 66225294 66226883 -83290154 - ORR1E-int LTR MaLR -15 1565 1 3 1090 1350 278 22 39 chr6 66226883 66227243 -83289794 - ORR1E LTR MaLR 0 359 6 3 1090 667 290 92 70 chr6 66227274 66227645 -83289392 + MTEa LTR MaLR 1 379 0 3 1090 288 289 45 27 chr6 66228573 66228701 -83288336 + MIRc SINE MIR 15 153 -115 3 1090 684 273 19 7 chr6 66228939 66229094 -83287943 + B3A SINE B2 1 157 -41 3 1090 297 0 0 0 chr6 66229122 66229155 -83287882 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1090 528 16 0 0 chr6 66229157 66229218 -83287819 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 3 1090 23 0 0 0 chr6 66229522 66229545 -83287492 + AT_rich Low_complexity Low_complexity 1 23 0 3 1090 240 111 0 0 chr6 66230305 66230341 -83286696 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1090 569 299 21 0 chr6 66230424 66230568 -83286469 - RSINE1 SINE B4 -17 148 2 3 1090 361 300 82 90 chr6 66230938 66231205 -83285832 - MLT1C LTR MaLR -202 265 1 3 1090 351 0 0 0 chr6 66231487 66231526 -83285511 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1090 413 269 29 0 chr6 66232180 66232284 -83284753 - PB1D7 SINE Alu -13 107 1 3 1090 210 341 97 0 chr6 66232540 66232659 -83284378 + MIRb SINE MIR 88 223 -45 3 1090 793 299 18 21 chr6 66232836 66233116 -83283921 - Lx9 LINE L1 -784 6860 6582 3 1090 449 314 34 23 chr6 66234886 66235062 -83281975 + Lx9 LINE L1 6392 6569 -1075 3 1090 831 272 107 128 chr6 66236890 66237274 -83279763 - MTEa LTR MaLR -1 378 3 3 1090 549 0 0 0 chr6 66237562 66237623 -83279414 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1090 1004 142 11 28 chr6 66238309 66238490 -83278547 + B2_Mm2 SINE B2 2 179 -16 3 1090 558 0 0 0 chr6 66238614 66238676 -83278361 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1090 507 33 0 0 chr6 66238676 66238737 -83278300 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 1090 564 169 8 41 chr6 66239316 66239439 -83277598 - RMER5 LTR ERV1 -259 275 157 3 1090 922 295 84 19 chr6 66239777 66240098 -83276939 - LTR40a LTR ERVL 0 519 121 3 1090 397 150 10 10 chr6 66240101 66240202 -83276835 + CT-rich Low_complexity Low_complexity 2 102 0 3 1090 261 0 0 0 chr6 66240245 66240274 -83276763 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1090 351 0 0 0 chr6 66240274 66240312 -83276725 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1090 816 293 22 18 chr6 66240352 66240627 -83276410 - B4A SINE B4 -14 278 3 3 1090 273 285 168 19 chr6 66240633 66240794 -83276243 - LTR40a LTR ERVL -273 189 5 3 1090 22 0 0 0 chr6 66242550 66242572 -83274465 + AT_rich Low_complexity Low_complexity 1 22 0 3 1090 261 0 0 0 chr6 66242657 66242686 -83274351 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 1090 508 239 9 0 chr6 66242687 66242796 -83274241 - PB1D9 SINE Alu -10 110 1 3 1090 180 0 0 0 chr6 66244323 66244343 -83272694 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1090 476 222 109 74 chr6 66244807 66244876 -83272161 - Lx4B LINE L1 -1 7057 6981 3 1090 870 10 0 0 chr6 66244876 66244975 -83272062 + (CA)n Simple_repeat Simple_repeat 1 99 0 3 1090 5681 191 27 5 chr6 66244975 66246377 -83270660 - Lx4B LINE L1 -78 6980 5437 3 1090 3744 132 8 19 chr6 66246371 66247018 -83270019 + Lx4B LINE L1 4761 5400 -477 3 1090 606 290 84 19 chr6 66247020 66247219 -83269818 - MTD LTR MaLR -209 210 1 3 1090 24 32 0 0 chr6 66250258 66250289 -83266748 + AT_rich Low_complexity Low_complexity 1 31 0 3 1090 652 239 22 0 chr6 66250928 66251062 -83265975 + B1_Mur1 SINE Alu 5 141 -8 3 1090 607 243 36 145 chr6 66251076 66251200 -83265837 - MTC LTR MaLR -4 417 313 3 1090 2034 101 16 10 chr6 66251200 66251509 -83265528 - L1_Mus4 LINE L1 -6 6630 6320 3 1090 607 243 36 145 chr6 66251509 66251605 -83265432 - MTC LTR MaLR -109 312 221 3 1090 1519 130 12 4 chr6 66251605 66251860 -83265177 + Lx3C LINE L1 5213 5469 -417 3 1090 2387 159 92 4 chr6 66251857 66252324 -83264713 + Lx3C LINE L1 5886 6393 -583 3 1090 381 179 158 0 chr6 66253661 66253756 -83263281 - MERVK26-int LTR ERVK -3290 2232 2123 3 1090 615 186 60 85 chr6 66253807 66254042 -83262995 - MERVK26-int LTR ERVK -3399 2123 1895 3 1090 4551 66 46 117 chr6 66254198 66254958 -83262079 - L1Md_F2 LINE L1 -1 6581 5876 3 1090 268 129 117 91 chr6 66255331 66255408 -83261629 - MERVK26-int LTR ERVK -3915 1607 1529 3 1090 8446 79 20 1 chr6 66256186 66258025 -83259012 - L1Md_F2 LINE L1 -2 6580 4718 3 1090 6308 88 3 0 chr6 66258022 66258918 -83258119 - L1Md_F2 LINE L1 -2246 3637 2739 3 1090 991 110 116 0 chr6 66259181 66259345 -83257692 - MERVK26-int LTR ERVK -6571 348 166 3 1090 1109 205 14 5 chr6 66260744 66260960 -83256077 + URR1B DNA MER1_type 1 218 -7 3 1090 29 28 0 0 chr6 66262047 66262083 -83254954 + AT_rich Low_complexity Low_complexity 1 36 0 3 1090 1830 56 0 0 chr6 66263710 66263944 -83253093 - L1Md_F3 LINE L1 0 6584 6351 3 1090 1749 223 128 33 chr6 66264289 66264804 -83252233 + RLTR12A LTR ERVK 1 564 -4 3 1090 235 224 0 15 chr6 66264981 66265049 -83251988 - MLT2B5 LTR ERVL 0 555 489 3 1090 23 33 0 0 chr6 66265049 66265079 -83251958 + AT_rich Low_complexity Low_complexity 1 30 0 3 1090 183 80 0 0 chr6 66265152 66265177 -83251860 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 3 1090 1198 55 0 12 chr6 66265186 66265351 -83251686 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 3 1090 728 253 107 66 chr6 66265352 66265757 -83251280 - MT2B LTR ERVL -58 543 1 3 1090 390 305 63 7 chr6 66265973 66266115 -83250922 + L1MB7 LINE L1 5906 6055 -129 3 1090 221 323 0 15 chr6 66266209 66266275 -83250762 + ID4_ SINE ID 6 70 -13 3 1090 255 281 55 64 chr6 66266295 66266405 -83250632 + ID_B1 SINE B4 112 220 -4 3 1090 259 331 37 8 chr6 66266693 66266827 -83250210 + L1M2 LINE L1 2460 2597 -4252 3 1090 273 211 0 0 chr6 66267007 66267059 -83249978 + ORR1D1 LTR MaLR 32 83 -291 3 1090 312 341 78 12 chr6 66267094 66267260 -83249777 + L1M2 LINE L1 3141 3317 -3528 3 1090 35361 46 0 3 chr6 66267262 66272521 -83244516 + L1Md_T LINE L1 251 5589 -297 3 1090 8478 29 0 1 chr6 66272521 66273518 -83243519 + L1Md_T LINE L1 5590 6585 0 3 1090 238 304 76 21 chr6 66273586 66273875 -83243162 + L1M2 LINE L1 3361 3665 -3180 3 1090 273 280 30 10 chr6 66273904 66274005 -83243032 + L1M2 LINE L1 5443 5545 -1300 3 1090 261 217 26 92 chr6 66274006 66274082 -83242955 + RLTR25A LTR ERVK 496 566 -537 3 1090 665 132 0 50 chr6 66274023 66274143 -83242894 + B1_Mus1 SINE Alu 35 148 0 3 1090 365 297 63 81 chr6 66274192 66274395 -83242642 + L1M2 LINE L1 5872 6105 -897 3 1090 1879 230 21 152 chr6 66274395 66275098 -83241939 + RMER19C LTR ERVK 1 611 0 3 1090 365 322 41 44 chr6 66275098 66275262 -83241775 + L1M2 LINE L1 6106 6272 -730 3 1090 645 279 35 0 chr6 66275279 66275451 -83241586 + B3 SINE B2 35 212 -4 3 1090 25 0 0 0 chr6 66275453 66275478 -83241559 + AT_rich Low_complexity Low_complexity 1 25 0 3 1090 437 278 17 9 chr6 66275551 66275667 -83241370 + MTE2b LTR MaLR 222 338 -41 3 1090 24471 80 8 13 chr6 66275698 66280306 -83236731 - L1Md_F2 LINE L1 -3 6579 1985 3 1090 2190 141 77 14 chr6 66280298 66280714 -83236323 - L1Md_F2 LINE L1 -5805 811 370 3 1090 241 200 0 0 chr6 66281010 66281021 -83236016 - B1_Mm SINE Alu 0 147 137 3 1090 237 83 0 0 chr6 66281021 66281057 -83235980 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 3 1090 241 200 0 0 chr6 66281057 66281095 -83235942 - B1_Mm SINE Alu -11 136 99 3 1090 1134 88 0 0 chr6 66281105 66281253 -83235784 + B1_Mus1 SINE Alu 1 148 0 3 1090 574 79 11 11 chr6 66281253 66281343 -83235694 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 3 1090 1148 46 34 22 chr6 66281349 66281527 -83235510 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 3 1090 783 0 0 0 chr6 66281529 66281616 -83235421 + (GGAAA)n Simple_repeat Simple_repeat 1 87 0 3 1090 450 220 0 21 chr6 66281620 66281713 -83235324 - B1_Mur2 SINE Alu -56 93 3 3 1090 188 264 54 65 chr6 66282779 66282872 -83234165 - L2c LINE L2 -13 3374 3283 3 1090 675 46 0 0 chr6 66283149 66283236 -83233801 + (TCC)n Simple_repeat Simple_repeat 1 87 0 3 1090 326 336 33 0 chr6 66283523 66283672 -83233365 + MER58B DNA MER1_type 175 332 -9 3 1090 2613 63 0 6 chr6 66283818 66284153 -83232884 + L1_Mus1 LINE L1 6235 6567 0 3 1090 1564 189 28 63 chr6 66284621 66284808 -83232229 + RMER17C LTR ERVK 1 180 -230 3 1090 967 96 12 18 chr6 66284808 66284978 -83232059 + (TTCTC)n Simple_repeat Simple_repeat 5 173 0 3 1090 1564 189 28 63 chr6 66284978 66285215 -83231822 + RMER17C LTR ERVK 181 410 0 3 1090 995 183 16 5 chr6 66286806 66286972 -83230065 + ORR1C1 LTR MaLR 1 169 -209 3 1090 609 14 0 0 chr6 66286972 66287042 -83229995 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1090 995 183 16 5 chr6 66287042 66287067 -83229970 + ORR1C1 LTR MaLR 170 193 -185 3 1090 3676 104 74 15 chr6 66287382 66287966 -83229071 - Lx LINE L1 -4 6650 6033 3 1090 195 114 0 0 chr6 66288156 66288191 -83228846 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1090 432 0 0 0 chr6 66288564 66288612 -83228425 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1090 3953 119 45 47 chr6 66289268 66289712 -83227325 - RMER17A LTR ERVK 0 751 313 3 1090 936 52 7 15 chr6 66289712 66289849 -83227188 + (GGAGA)n Simple_repeat Simple_repeat 2 137 0 3 1090 3953 119 45 47 chr6 66289849 66290145 -83226892 - RMER17A LTR ERVK -439 312 13 3 1090 357 94 0 0 chr6 66290157 66290210 -83226827 - RMER17A LTR ERVK -698 53 1 3 1090 45 34 0 0 chr6 66290211 66290270 -83226767 + AT_rich Low_complexity Low_complexity 1 59 0 3 1090 691 219 66 46 chr6 66293223 66293419 -83223618 + B3 SINE B2 1 200 -16 3 1090 357 295 75 58 chr6 66294261 66294497 -83222540 + B4A SINE B4 1 278 -14 3 1090 275 341 22 0 chr6 66294710 66294892 -83222145 + L1_Mur3 LINE L1 1608 1793 -4087 3 1090 2094 240 23 16 chr6 66295121 66295634 -83221403 - RLTR11A2 LTR ERVK -10 517 1 3 1090 557 317 87 49 chr6 66295654 66296497 -83220540 + L1MA4 LINE L1 2408 3298 -2845 3 1090 345 132 143 29 chr6 66296513 66296583 -83220454 + B1_Mur1 SINE Alu 72 149 0 3 1090 710 280 23 11 chr6 66296714 66296891 -83220146 + B3A SINE B2 12 190 -8 3 1090 2698 272 50 74 chr6 66297034 66298133 -83218904 + RMER1C Other Other 391 1342 0 3 1090 513 317 19 19 chr6 66298130 66298445 -83218592 + L1MA4 LINE L1 5601 5915 -385 3 1090 396 0 0 0 chr6 66298449 66298493 -83218544 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1090 1429 208 78 42 chr6 66298706 66299067 -83217970 - ORR1D1 LTR MaLR 0 374 1 3 1090 24 32 0 0 chr6 66299072 66299103 -83217934 + AT_rich Low_complexity Low_complexity 1 31 0 3 1090 258 231 62 0 chr6 66299291 66299356 -83217681 - MIR SINE MIR -35 227 159 3 1090 1093 189 41 9 chr6 66299381 66299600 -83217437 - URR1A DNA MER1_type 0 226 1 3 1090 464 352 14 0 chr6 66299886 66300025 -83217012 - RSINE1 SINE B4 -20 145 5 3 1090 34 24 0 0 chr6 66301038 66301079 -83215958 + AT_rich Low_complexity Low_complexity 1 41 0 3 1090 238 248 64 9 chr6 66301207 66301317 -83215720 - L1MA9 LINE L1 -20 6292 6177 3 1090 268 303 26 0 chr6 66301318 66301394 -83215643 + ID4 SINE ID 2 79 -4 4 1090 245 235 0 0 chr6 66301548 66301599 -83215438 + B3A SINE B2 1 51 -147 4 1090 22 0 0 0 chr6 66301707 66301729 -83215308 + AT_rich Low_complexity Low_complexity 1 22 0 4 1090 2146 157 67 22 chr6 66301863 66302266 -83214771 + MTC LTR MaLR 1 421 0 4 1090 2759 176 13 42 chr6 66302266 66302807 -83214230 + MTC-int LTR MaLR 3 527 -731 4 1090 1974 26 0 0 chr6 66302934 66303165 -83213872 + L1Md_F2 LINE L1 6340 6570 -12 4 1090 207 100 0 0 chr6 66303216 66303246 -83213791 + (CATATA)n Simple_repeat Simple_repeat 4 33 0 4 1090 391 296 113 28 chr6 66303249 66303496 -83213541 - RMER12 LTR ERVK -334 988 721 4 1090 667 278 0 18 chr6 66303694 66303921 -83213116 - L1MA9 LINE L1 -755 5557 5335 3 1090 350 386 29 29 chr6 66304009 66304252 -83212785 - ORR1E LTR MaLR -112 247 5 4 1090 333 0 0 0 chr6 66304555 66304592 -83212445 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1090 1554 234 75 3 chr6 66305048 66305437 -83211600 + MTD LTR MaLR 3 419 0 4 1090 1851 174 94 0 chr6 66306002 66306041 -83210996 + ORR1C2 LTR MaLR 1 41 -343 4 1090 351 0 0 0 chr6 66306041 66306080 -83210957 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1090 1851 174 94 0 chr6 66306080 66306391 -83210646 + ORR1C2 LTR MaLR 42 383 -1 4 1090 1688 192 0 59 chr6 66306531 66306869 -83210168 - ORR1A3 LTR MaLR -8 318 1 4 1090 25 0 0 0 chr6 66308071 66308096 -83208941 + AT_rich Low_complexity Low_complexity 1 25 0 4 1090 696 164 0 0 chr6 66309461 66309638 -83207399 + CT-rich Low_complexity Low_complexity 2 178 0 4 1090 396 0 0 0 chr6 66309638 66309682 -83207355 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1090 207 162 0 0 chr6 66310414 66310451 -83206586 + T-rich Low_complexity Low_complexity 1 37 0 4 1090 534 213 9 36 chr6 66310454 66310566 -83206471 - PB1D9 SINE Alu -5 115 7 4 1090 275 259 62 124 chr6 66311637 66311734 -83205303 - PB1D10 SINE Alu -11 106 16 4 1090 2374 79 3 12 chr6 66311891 66312211 -83204826 + ORR1A2 LTR MaLR 11 327 0 4 1090 206 236 27 27 chr6 66312504 66312578 -83204459 - MIRb SINE MIR 0 268 195 4 1090 1119 201 9 14 chr6 66312627 66312844 -83204193 - B3 SINE B2 0 216 1 4 1090 379 275 11 32 chr6 66313388 66313482 -83203555 - RSINE1 SINE B4 -28 137 46 4 1090 436 282 97 34 chr6 66313424 66313600 -83203437 - MTE2a LTR MaLR -192 187 1 4 1090 207 0 0 0 chr6 66313886 66313909 -83203128 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1090 1952 26 0 0 chr6 66314708 66314942 -83202095 + L1Md_T LINE L1 5353 5586 -297 4 1090 8564 31 0 0 chr6 66314942 66315938 -83201099 + L1Md_T LINE L1 5587 6582 0 4 1090 1321 226 36 16 chr6 66316348 66316701 -83200336 + Lx5 LINE L1 6721 7051 -7 4 1090 1368 52 0 0 chr6 66316701 66316874 -83200163 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 4 1090 3448 141 61 14 chr6 66317695 66318339 -83198698 - RMER6A LTR ERVK -2 754 6 4 1090 416 354 44 6 chr6 66318670 66318829 -83198208 - MLT1I LTR MaLR -51 360 196 4 1090 270 81 0 0 chr6 66319281 66319318 -83197719 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1090 405 264 71 45 chr6 66319772 66319927 -83197110 - RLTR14 LTR ERV1 0 382 224 4 1090 367 316 62 22 chr6 66320436 66320614 -83196423 - MER119 DNA MER1_type -192 391 207 4 1090 252 0 0 0 chr6 66321261 66321289 -83195748 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 4 1090 201 279 0 14 chr6 66321412 66321481 -83195556 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 1090 216 297 0 14 chr6 66321585 66321646 -83195391 + L2a LINE L2 3310 3408 -18 4 1090 180 0 0 0 chr6 66321810 66321830 -83195207 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1090 33 25 0 0 chr6 66322146 66322186 -83194851 + AT_rich Low_complexity Low_complexity 1 40 0 4 1091 26 0 0 0 chr6 66322863 66322889 -83194148 + AT_rich Low_complexity Low_complexity 1 26 0 4 1091 539 29 14 0 chr6 66323202 66323271 -83193766 + (TC)n Simple_repeat Simple_repeat 2 71 0 4 1091 351 0 0 0 chr6 66323271 66323309 -83193728 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 1091 396 0 0 0 chr6 66323309 66323352 -83193685 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1091 895 222 19 124 chr6 66324445 66324712 -83192325 + RLTR42 LTR ERVK 1 239 0 4 1091 1486 244 102 32 chr6 66324712 66325250 -83191787 + RLTR42-int LTR ERVK 1 576 -4946 4 1091 960 196 58 0 chr6 66325297 66325571 -83191466 + RLTR42-int LTR ERVK 688 1032 -4490 4 1091 369 0 0 0 chr6 66325629 66325670 -83191367 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1091 641 155 69 21 chr6 66325670 66325815 -83191222 - RMER1A Other Other -20 1010 859 4 1091 368 314 38 45 chr6 66325944 66326208 -83190829 - L1_Mur3 LINE L1 -1539 4341 4080 4 1091 3906 163 40 4 chr6 66326208 66326917 -83190120 + Lx LINE L1 5918 6651 -3 4 1091 331 339 37 22 chr6 66326917 66326975 -83190062 - L1M2 LINE L1 -2033 4110 4046 4 1091 861 207 7 20 chr6 66326998 66327151 -83189886 - RSINE1 SINE B4 -4 161 11 4 1091 249 146 0 0 chr6 66327730 66327778 -83189259 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1091 7629 79 3 7 chr6 66327812 66328918 -83188119 - L1_Mus3 LINE L1 -7 6631 5531 4 1091 262 285 58 16 chr6 66329631 66329820 -83187217 + L1M5 LINE L1 5704 5900 -340 4 1091 366 274 63 79 chr6 66330196 66330323 -83186714 + MTEa LTR MaLR 1 125 -254 4 1091 299 85 0 21 chr6 66330515 66330563 -83186474 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1091 284 226 0 17 chr6 66330751 66330823 -83186214 - PB1D9 SINE Alu -36 113 47 4 1091 597 257 175 64 chr6 66331178 66332053 -83184984 - L1MA4 LINE L1 -1553 5920 4904 4 1091 212 290 15 46 chr6 66332060 66332125 -83184912 + ID SINE ID 23 85 -139 4 1091 345 285 22 5 chr6 66334234 66334339 -83182698 + PB1D7 SINE Alu 3 106 -43 4 1091 495 245 118 74 chr6 66334429 66334632 -83182405 + B3 SINE B2 4 215 -1 4 1091 54 90 0 0 chr6 66334676 66334821 -83182216 + AT_rich Low_complexity Low_complexity 1 145 0 4 1091 511 277 45 72 chr6 66336685 66337027 -83180010 + L1MA8 LINE L1 5709 6039 -252 4 1091 29933 77 49 25 chr6 66337460 66339129 -83177908 - L1Md_F2 LINE L1 -2 6580 4825 4 1091 225 283 45 91 chr6 66339129 66339261 -83177776 + MER72B LTR ERV1 288 413 -355 4 1091 29933 77 49 25 chr6 66339261 66342699 -83174338 - L1Md_F2 LINE L1 -2 4824 1204 4 1091 6636 57 2 2 chr6 66342666 66343494 -83173543 - L1Md_F LINE L1 -5380 1139 312 4 1091 256 287 78 61 chr6 66344029 66344144 -83172893 + PB1D10 SINE Alu 1 117 0 4 1091 346 240 53 60 chr6 66344253 66344386 -83172651 - Lx8 LINE L1 -1463 6010 5879 4 1091 974 280 99 30 chr6 66344413 66344990 -83172047 - Lx8 LINE L1 -86 5794 5178 4 1091 409 339 94 58 chr6 66345016 66345520 -83171517 + MLT2F LTR ERVL 27 610 -53 4 1091 694 233 14 7 chr6 66346041 66346188 -83170849 + B1F1 SINE Alu 2 149 0 4 1091 314 23 0 23 chr6 66346188 66346232 -83170805 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 4 1091 239 29 0 54 chr6 66346529 66346566 -83170471 + (TATG)n Simple_repeat Simple_repeat 2 36 0 4 1091 650 262 152 32 chr6 66346833 66347148 -83169889 - MLT1A0 LTR MaLR -12 353 1 4 1091 25 0 0 0 chr6 66348315 66348340 -83168697 + AT_rich Low_complexity Low_complexity 1 25 0 4 1091 1259 68 6 0 chr6 66348340 66348503 -83168534 + L1_Mus1 LINE L1 6266 6429 -138 4 1091 285 29 0 0 chr6 66351030 66351064 -83165973 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 4 1091 995 108 11 22 chr6 66351066 66351246 -83165791 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 1091 262 314 97 23 chr6 66353452 66353628 -83163409 + Lx8 LINE L1 6060 6248 -1225 4 1091 321 26 0 0 chr6 66354541 66354579 -83162458 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1091 1190 253 14 14 chr6 66354615 66354892 -83162145 + Lx8 LINE L1 6328 6604 -869 4 1091 21 36 0 0 chr6 66355089 66355117 -83161920 + AT_rich Low_complexity Low_complexity 1 28 0 4 1091 403 311 49 66 chr6 66355312 66355677 -83161360 + Lx9 LINE L1 7271 7629 -15 4 1091 490 295 80 5 chr6 66355867 66356068 -83160969 - MLT1D LTR MaLR -267 238 23 4 1091 743 267 120 23 chr6 66356221 66356569 -83160468 - MTD LTR MaLR -16 403 8 4 1091 591 285 98 19 chr6 66356815 66357080 -83159957 - B4A SINE B4 -6 286 1 4 1091 327 356 76 54 chr6 66357508 66357784 -83159253 - ORR1E LTR MaLR -52 307 26 4 1091 196 333 60 0 chr6 66358216 66358333 -83158704 + MIRb SINE MIR 135 258 -10 4 1091 307 353 29 17 chr6 66358963 66359136 -83157901 - MIRb SINE MIR -38 230 56 4 1091 495 0 0 0 chr6 66360415 66360470 -83156567 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1091 243 0 0 0 chr6 66361480 66361507 -83155530 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1091 3940 210 32 34 chr6 66361507 66362101 -83154936 + Lx7 LINE L1 6770 7359 -337 4 1091 678 58 0 0 chr6 66362101 66362188 -83154849 + (TC)n Simple_repeat Simple_repeat 2 88 0 4 1091 3940 210 32 34 chr6 66362188 66362506 -83154531 + Lx7 LINE L1 7360 7680 -16 4 1091 856 244 11 23 chr6 66362811 66362987 -83154050 - B3A SINE B2 -16 182 9 4 1091 246 368 7 36 chr6 66364572 66364710 -83152327 - L2a LINE L2 -81 3345 3212 4 1091 652 167 38 27 chr6 66365802 66365987 -83151050 - Lx3B LINE L1 -788 6185 5999 4 1091 3891 134 86 25 chr6 66365996 66366707 -83150330 + Lx3B LINE L1 6239 7000 0 4 1091 375 294 99 22 chr6 66366843 66367024 -83150013 - B3A SINE B2 0 198 4 4 1091 272 296 53 58 chr6 66367152 66367360 -83149677 - L1ME3B LINE L1 -183 6057 5851 4 1091 269 308 33 44 chr6 66367501 66367681 -83149356 - Lx8 LINE L1 -73 7400 7223 4 1091 1015 330 62 55 chr6 66367677 66367804 -83149233 + Lx8 LINE L1 6662 6787 -686 4 1091 629 179 318 0 chr6 66367804 66367955 -83149082 + B3 SINE B2 5 203 -13 4 1091 414 0 0 0 chr6 66367956 66368002 -83149035 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1091 1015 330 62 55 chr6 66368002 66368437 -83148600 + Lx8 LINE L1 6788 7230 -243 4 1091 1018 214 72 38 chr6 66368820 66369112 -83147925 - L1_Mur3 LINE L1 -2163 3717 3416 4 1091 21 0 0 0 chr6 66370841 66370862 -83146175 + AT_rich Low_complexity Low_complexity 1 21 0 4 1091 793 283 16 11 chr6 66371004 66371190 -83145847 + B3A SINE B2 6 192 -6 5 1091 31 0 0 0 chr6 66372137 66372168 -83144869 + AT_rich Low_complexity Low_complexity 1 31 0 5 1091 362 298 0 78 chr6 66372243 66372345 -83144692 + B1F1 SINE Alu 16 109 -40 5 1091 21 0 0 0 chr6 66373422 66373443 -83143594 + AT_rich Low_complexity Low_complexity 1 21 0 5 1091 923 280 139 8 chr6 66373592 66373966 -83143071 - MER57C2 LTR ERV1 0 434 12 5 1091 387 167 0 15 chr6 66374002 66374069 -83142968 + B3 SINE B2 5 70 -146 5 1091 198 0 0 0 chr6 66374280 66374302 -83142735 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1091 691 277 0 0 chr6 66374769 66374910 -83142127 - RSINE1 SINE B4 -22 143 3 5 1091 414 0 0 0 chr6 66375182 66375228 -83141809 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1091 8518 30 0 0 chr6 66376553 66377548 -83139489 - L1Md_T LINE L1 0 6582 5588 5 1091 292 187 11 11 chr6 66380949 66380974 -83136063 + polypurine Low_complexity Low_complexity 2 25 0 5 1091 228 122 0 0 chr6 66380974 66381015 -83136022 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1091 292 187 11 11 chr6 66381015 66381081 -83135956 + GA-rich Low_complexity Low_complexity 26 92 0 5 1091 753 93 0 0 chr6 66381110 66381217 -83135820 + (GGAA)n Simple_repeat Simple_repeat 4 110 0 5 1091 757 319 43 68 chr6 66381535 66382094 -83134943 - L1M2 LINE L1 -904 5239 4695 5 1091 5019 151 125 10 chr6 66382096 66383018 -83134019 + RLTR25B LTR ERVK 1 1028 0 5 1091 438 230 27 168 chr6 66383018 66383286 -83133751 - L1M2 LINE L1 -1445 4698 4446 5 1091 667 180 45 26 chr6 66383301 66383455 -83133582 + Lx7 LINE L1 5633 5789 -1907 5 1091 277 206 0 68 chr6 66383450 66383523 -83133514 + Lx8 LINE L1 6793 6860 -613 5 1091 1921 203 36 3 chr6 66384787 66385148 -83131889 + MTC LTR MaLR 49 421 0 5 1091 2892 91 24 2 chr6 66387534 66387951 -83129086 - Lx3B LINE L1 -462 6511 6086 5 1091 234 23 45 23 chr6 66387997 66388041 -83128996 + (TAAAAA)n Simple_repeat Simple_repeat 4 48 0 5 1091 435 167 0 0 chr6 66388454 66388544 -83128493 + (TA)n Simple_repeat Simple_repeat 1 90 0 5 1091 510 150 41 16 chr6 66388582 66388704 -83128333 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 5 1091 226 247 14 0 chr6 66388940 66389013 -83128024 + (TTA)n Simple_repeat Simple_repeat 2 75 0 5 1091 400 247 0 0 chr6 66389077 66389154 -83127883 + PB1D10 SINE Alu 1 77 -40 5 1091 197 250 16 32 chr6 66389830 66389892 -83127145 + MIR SINE MIR 68 128 -134 5 1091 1256 67 77 16 chr6 66390085 66390236 -83126801 + B2_Mm2 SINE B2 1 148 -47 5 1091 183 42 0 0 chr6 66390236 66390260 -83126777 + (CATA)n Simple_repeat Simple_repeat 3 26 0 5 1091 1256 67 77 16 chr6 66390260 66390290 -83126747 + B2_Mm2 SINE B2 149 191 -4 5 1091 180 0 0 0 chr6 66390290 66390310 -83126727 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 5 1091 3714 110 41 12 chr6 66390458 66391018 -83126019 + Lx3A LINE L1 6399 6974 -7 5 1091 711 286 30 30 chr6 66391120 66391318 -83125719 - B3A SINE B2 0 198 1 5 1091 1637 251 48 10 chr6 66391393 66391791 -83125246 + MTD LTR MaLR 7 419 0 5 1091 1054 97 14 0 chr6 66392466 66392611 -83124426 + B1_Mus2 SINE Alu 1 147 0 5 1091 21 57 0 0 chr6 66393117 66393152 -83123885 + AT_rich Low_complexity Low_complexity 1 35 0 5 1091 2885 182 42 61 chr6 66393449 66394168 -83122869 + RMER6A LTR ERVK 48 752 -4 5 1091 2085 118 46 90 chr6 66394500 66394911 -83122126 - RLTR9C LTR ERVK 0 393 1 5 1091 336 322 0 0 chr6 66395323 66395396 -83121641 + BC1_Mm scRNA scRNA 1 73 -79 5 1091 252 0 0 0 chr6 66395396 66395424 -83121613 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1091 336 322 0 0 chr6 66395424 66395437 -83121600 + BC1_Mm scRNA scRNA 74 86 -66 5 1091 545 250 16 24 chr6 66395830 66395953 -83121084 + B3A SINE B2 1 122 -76 5 1091 439 90 0 0 chr6 66396557 66396624 -83120413 - ORR1A4 LTR MaLR -262 67 1 5 1091 1878 101 29 0 chr6 66396624 66396901 -83120136 - ORR1A4-int LTR MaLR 0 1963 1679 5 1091 2365 150 138 15 chr6 66397052 66397712 -83119325 - Lx2B LINE L1 -433 6567 5827 5 1091 8104 28 0 0 chr6 66397782 66399065 -83117972 - L1Md_T LINE L1 0 6582 5300 5 1091 596 38 0 0 chr6 66399065 66399144 -83117893 - Lx5 LINE L1 -1209 5841 5763 5 1091 1194 166 77 0 chr6 66399144 66399391 -83117646 - ORR1A4-int LTR MaLR -931 1032 767 5 1091 222 354 91 0 chr6 66399309 66399408 -83117629 - B1F SINE Alu -22 127 20 5 1091 2634 159 102 13 chr6 66399844 66400366 -83116671 - RMER15 LTR ERVL -5 570 3 5 1091 1733 112 0 16 chr6 66400397 66400692 -83116345 + ORR1A4-int LTR MaLR 1714 1963 0 5 1091 1797 156 45 10 chr6 66400692 66401002 -83116035 + ORR1A4 LTR MaLR 1 321 -8 5 1091 248 233 55 0 chr6 66401339 66401412 -83115625 + GA-rich Low_complexity Low_complexity 4 80 0 5 1091 536 342 13 40 chr6 66403271 66403499 -83113538 - MLT1B LTR MaLR -18 372 151 5 1091 210 333 67 67 chr6 66403938 66404073 -83112964 + MIRc SINE MIR 43 180 -96 5 1091 1385 161 12 4 chr6 66404129 66404373 -83112664 - ORR1B2 LTR MaLR 0 367 122 5 1091 284 286 133 42 chr6 66404682 66404844 -83112193 - MLT1H1 LTR MaLR -281 267 85 5 1091 833 32 8 16 chr6 66404862 66404989 -83112048 + L1Md_F2 LINE L1 6457 6582 0 5 1091 378 74 0 0 chr6 66405637 66405691 -83111346 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 5 1091 204 40 0 0 chr6 66406317 66406342 -83110695 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 5 1091 476 325 53 7 chr6 66406365 66406517 -83110520 - B3A SINE B2 -39 159 1 5 1091 280 207 17 0 chr6 66406528 66406586 -83110451 + RMER5 LTR ERV1 217 275 -259 5 1091 22 56 0 0 chr6 66407083 66407119 -83109918 + AT_rich Low_complexity Low_complexity 1 36 0 5 1091 599 285 65 58 chr6 66407445 66407754 -83109283 - RMER10A LTR ERVL 0 442 132 5 1091 328 188 29 0 chr6 66408246 66408315 -83108722 - ID4 SINE ID -11 72 2 5 1091 252 122 0 0 chr6 66408522 66408563 -83108474 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 5 1091 36242 34 1 2 chr6 66408594 66414529 -83102508 - L1Md_T LINE L1 0 6585 591 5 1091 877 10 0 0 chr6 66414452 66414554 -83102483 + L1Md_Gf LINE L1 563 664 -5858 5 1091 26 30 0 0 chr6 66414980 66415013 -83102024 + AT_rich Low_complexity Low_complexity 1 33 0 5 1091 349 253 45 11 chr6 66416267 66416355 -83100682 + PB1D10 SINE Alu 27 117 0 5 1091 253 311 15 0 chr6 66417254 66417330 -83099707 + BC1_Mm scRNA scRNA 9 85 -67 5 1091 742 274 38 0 chr6 66417910 66418096 -83098941 + ID_B1 SINE B4 1 193 -31 5 1091 235 312 63 21 chr6 66418404 66418499 -83098538 - MIR SINE MIR -60 202 104 5 1091 438 299 34 27 chr6 66418591 66418739 -83098298 + Charlie1b DNA MER1_type 126 274 -249 5 1091 492 286 24 0 chr6 66419302 66419428 -83097609 - B3 SINE B2 -4 212 84 5 1091 1424 44 33 6 chr6 66419610 66419793 -83097244 + B2_Mm2 SINE B2 1 188 -7 5 1091 22 0 0 0 chr6 66419819 66419841 -83097196 + AT_rich Low_complexity Low_complexity 1 22 0 5 1091 2928 195 78 68 chr6 66420410 66421469 -83095568 + RMER1A Other Other 7 999 -67 5 1091 555 16 0 0 chr6 66421469 66421533 -83095504 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1091 300 161 170 11 chr6 66421540 66421634 -83095403 + RMER1A Other Other 922 1030 0 5 1091 554 182 125 49 chr6 66422025 66422169 -83094868 - ID_B1 SINE B4 0 224 70 5 1091 319 229 47 24 chr6 66423206 66423291 -83093746 + RSINE1 SINE B4 9 95 -70 5 1091 747 208 41 14 chr6 66423295 66423441 -83093596 + B3A SINE B2 2 151 -47 5 1091 264 59 0 0 chr6 66423458 66423492 -83093545 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1091 208 229 0 20 chr6 66423650 66423699 -83093338 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1091 1042 230 14 0 chr6 66423968 66424177 -83092860 + B3 SINE B2 5 216 0 5 1091 9197 27 1 0 chr6 66424323 66425466 -83091571 + L1_Mm LINE L1 4226 5369 -514 5 1091 300 355 70 17 chr6 66427552 66427724 -83089313 - MIR SINE MIR -68 194 14 5 1091 234 0 0 0 chr6 66428037 66428063 -83088974 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1091 338 342 17 9 chr6 66429310 66429425 -83087612 + MIRb SINE MIR 7 122 -146 5 1091 278 283 83 54 chr6 66430033 66430201 -83086836 + MIRb SINE MIR 80 252 -16 5 1091 702 258 51 26 chr6 66430272 66430467 -83086570 + B3A SINE B2 2 201 -15 5 1091 518 190 49 20 chr6 66430468 66430570 -83086467 - URR1A DNA MER1_type -96 130 26 5 1091 227 196 39 0 chr6 66430591 66430642 -83086395 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 5 1091 207 318 186 0 chr6 66430680 66430809 -83086228 - MIR SINE MIR -105 157 5 5 1091 739 247 70 114 chr6 66430869 66431070 -83085967 + B3 SINE B2 1 192 -3 5 1091 582 347 20 32 chr6 66431862 66432115 -83084922 - B4A SINE B4 -16 276 27 5 1091 3612 161 14 8 chr6 66432262 66432970 -83084067 + L1_Mur3 LINE L1 4836 5547 -333 5 1091 218 351 13 0 chr6 66433731 66433808 -83083229 - MIRc SINE MIR -114 154 77 5 1091 942 244 117 3 chr6 66433897 66434205 -83082832 - MER2 DNA MER2_type 0 345 3 5 1091 186 71 0 0 chr6 66434612 66434640 -83082397 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1091 551 272 68 37 chr6 66434718 66434909 -83082128 - B3A SINE B2 0 198 2 5 1091 411 38 0 0 chr6 66435788 66435841 -83081196 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1091 785 200 161 0 chr6 66436229 66436409 -83080628 + ORR1D1 LTR MaLR 3 211 -163 5 1091 2954 30 0 0 chr6 66436411 66436748 -83080289 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1091 7376 29 2 6 chr6 66436748 66437654 -83079383 - IAPEz-int LTR ERVK 0 6481 5579 5 1091 8140 8 1 0 chr6 66437655 66438595 -83078442 - IAPEz-int LTR ERVK -1418 5063 4123 5 1091 886 73 24 0 chr6 66438597 66438720 -83078317 - IAPEz-int LTR ERVK -2770 4910 4785 5 1091 1729 119 4 4 chr6 66438717 66438979 -83078058 - IAPEz-int LTR ERVK -5183 2497 2236 5 1091 424 38 0 0 chr6 66438978 66439031 -83078006 - IAPEz-int LTR ERVK -5070 1411 1359 5 1091 4107 43 58 0 chr6 66439063 66439615 -83077422 - IAPEz-int LTR ERVK -5890 591 8 5 1091 2967 27 0 0 chr6 66439615 66439952 -83077085 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1091 552 194 26 4 chr6 66439961 66440080 -83076957 + ORR1D1 LTR MaLR 264 379 0 5 1091 507 233 87 27 chr6 66441117 66441238 -83075799 - MTD LTR MaLR -216 203 74 5 1091 565 158 271 29 chr6 66441238 66441482 -83075555 + RMER17C LTR ERVK 1 410 0 6 1091 376 335 138 5 chr6 66441482 66441556 -83075481 - MTD LTR MaLR -315 104 5 6 1091 619 142 7 7 chr6 66441574 66441723 -83075314 + GA-rich Low_complexity Low_complexity 2 150 0 6 1091 447 19 0 0 chr6 66442346 66442398 -83074639 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1091 288 0 0 0 chr6 66442590 66442622 -83074415 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1091 1013 112 46 0 chr6 66443012 66443164 -83073873 + B2_Mm2 SINE B2 3 161 -34 6 1091 190 29 28 56 chr6 66443165 66443201 -83073836 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 1091 1220 61 0 0 chr6 66443637 66443785 -83073252 + B1_Mus1 SINE Alu 1 148 0 6 1091 449 300 55 84 chr6 66444203 66444440 -83072597 + MLT1C LTR MaLR 223 452 -15 6 1091 2287 175 14 17 chr6 66446810 66447229 -83069808 - MTC LTR MaLR 0 421 4 6 1091 255 61 0 0 chr6 66448201 66448234 -83068803 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1091 351 274 164 61 chr6 66449832 66450046 -83066991 + L1ME4a LINE L1 5655 5890 -234 6 1091 340 290 72 58 chr6 66450678 66450817 -83066220 + ORR1D2 LTR MaLR 15 155 -215 6 1091 293 286 10 39 chr6 66450853 66450955 -83066082 + ORR1D2 LTR MaLR 251 349 -30 6 1091 515 291 84 13 chr6 66452552 66452862 -83064175 - L1MA5 LINE L1 -374 5926 5595 6 1091 180 0 0 0 chr6 66452862 66452882 -83064155 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1091 366 23 0 0 chr6 66452971 66453014 -83064023 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1091 745 232 18 106 chr6 66453139 66453212 -83063825 - ORR1C2 LTR MaLR 0 384 312 6 1091 1205 111 22 0 chr6 66453212 66453392 -83063645 - B2_Mm2 SINE B2 -10 185 2 6 1091 745 232 18 106 chr6 66453392 66453481 -83063556 - ORR1C2 LTR MaLR -73 311 241 6 136 5505 66 42 5 chr6 66453481 66454262 -83062775 + RLTR22_Mus LTR ERVK 1 810 -998 6 1092 370 258 96 110 chr6 66454475 66454693 -83062344 + RMER12 LTR ERVK 1106 1320 -2 6 1092 556 215 148 23 chr6 66454693 66454877 -83062160 - ORR1D1 LTR MaLR -140 238 3 6 1092 641 235 68 22 chr6 66454981 66455203 -83061834 - L1MA5 LINE L1 -753 5544 5313 6 1092 692 29 0 28 chr6 66455203 66455310 -83061727 - L1Md_F3 LINE L1 -12 6572 6469 6 1092 1686 157 53 113 chr6 66455454 66455871 -83061166 + RLTR9C LTR ERVK 2 393 0 6 1092 252 0 0 0 chr6 66456016 66456044 -83060993 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1092 22 0 0 0 chr6 66456100 66456122 -83060915 + AT_rich Low_complexity Low_complexity 1 22 0 6 1092 1228 253 20 73 chr6 66456153 66456511 -83060526 + Lx6 LINE L1 7102 7440 -20 6 1092 273 320 30 20 chr6 66456902 66457001 -83060036 - MER102b DNA MER1_type -151 190 91 6 1092 591 303 50 10 chr6 66457243 66457443 -83059594 - ID_B1 SINE B4 -15 209 2 6 1092 489 293 95 70 chr6 66457538 66457696 -83059341 + RSINE1 SINE B4 4 165 0 6 1092 2055 117 33 0 chr6 66458119 66458426 -83058611 - ORR1A2 LTR MaLR -8 319 3 6 1092 389 108 0 44 chr6 66458504 66458572 -83058465 + ORR1A4 LTR MaLR 1 65 -264 6 1092 801 179 93 21 chr6 66458519 66458710 -83058327 - MT2B LTR ERVL -317 267 67 6 1092 2240 135 3 0 chr6 66458710 66459059 -83057978 - MERVL-int LTR ERVL -2025 3460 3111 6 1092 1017 180 59 5 chr6 66459059 66459266 -83057771 + ORR1A3 LTR MaLR 107 315 -14 6 1092 1027 120 106 150 chr6 66459276 66459522 -83057515 + ORR1A3-int LTR MaLR 517 751 -1212 6 1092 444 200 7 120 chr6 66459444 66459586 -83057451 - ORR1A3 LTR MaLR -198 128 3 6 1092 1106 303 69 26 chr6 66459637 66459998 -83057039 - MTD LTR MaLR -14 405 1 6 1092 2260 242 82 124 chr6 66460003 66460363 -83056674 - MTD-int LTR MaLR -4 1254 835 6 1092 207 0 0 0 chr6 66460363 66460386 -83056651 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1092 2260 242 82 124 chr6 66460386 66460929 -83056108 - MTD-int LTR MaLR -424 834 389 6 1092 383 281 81 16 chr6 66461254 66461377 -83055660 - RLTR23 LTR ERV1 -292 138 8 6 1092 391 225 0 0 chr6 66461403 66461483 -83055554 - MTD-int LTR MaLR -873 385 306 6 1092 400 171 15 15 chr6 66461539 66461633 -83055404 + Lx9 LINE L1 5787 5916 -1728 6 1092 5986 196 53 7 chr6 66461728 66463020 -83054017 + Lx9 LINE L1 6160 7511 -133 6 1092 290 212 40 0 chr6 66463124 66463223 -83053814 + (TA)n Simple_repeat Simple_repeat 2 104 0 6 1092 476 190 10 0 chr6 66463329 66463429 -83053608 + Lx9 LINE L1 7537 7637 -7 6 1092 562 255 61 61 chr6 66463439 66463652 -83053385 - MTD-int LTR MaLR -1045 213 1 6 1092 802 234 187 113 chr6 66463652 66463989 -83053048 - MTD LTR MaLR 0 419 58 6 1092 225 0 0 0 chr6 66464126 66464151 -83052886 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 6 1092 1515 243 68 68 chr6 66465247 66465733 -83051304 - RMER5 LTR ERV1 -48 486 1 6 1092 225 242 58 117 chr6 66467098 66467201 -83049836 - BC1_Mm scRNA scRNA -54 98 2 6 1092 23 33 0 0 chr6 66467463 66467493 -83049544 + AT_rich Low_complexity Low_complexity 1 30 0 6 1092 260 286 119 33 chr6 66467777 66467987 -83049050 + L1M4 LINE L1 3579 3806 -2340 6 1092 21 0 0 0 chr6 66468093 66468114 -83048923 + AT_rich Low_complexity Low_complexity 1 21 0 6 1092 660 205 24 0 chr6 66468114 66468241 -83048796 + B3 SINE B2 1 130 -86 6 1092 10760 94 20 7 chr6 66468451 66470547 -83046490 + L1VL4 LINE L1 404 2525 -1034 6 1092 3704 124 16 6 chr6 66470545 66471168 -83045869 + L1_Mur2 LINE L1 3758 4386 -1491 6 1092 2486 65 3 3 chr6 66471170 66471512 -83045525 + L1_Mus4 LINE L1 5758 6099 -537 6 1092 2033 68 43 0 chr6 66471512 66471790 -83045247 + L1_Mus4 LINE L1 6341 6630 -6 6 1092 612 50 0 0 chr6 66472710 66472790 -83044247 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1092 737 290 72 20 chr6 66473073 66473365 -83043672 + Charlie1a DNA MER1_type 896 1202 -253 6 1092 270 136 0 0 chr6 66473541 66473585 -83043452 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1092 1213 48 0 0 chr6 66473585 66473732 -83043305 - B1_Mm SINE Alu 0 147 1 6 1092 464 246 42 0 chr6 66473732 66473874 -83043163 + Charlie1a DNA MER1_type 1285 1432 -23 6 1092 210 154 0 0 chr6 66474536 66474575 -83042462 + A-rich Low_complexity Low_complexity 1 39 0 6 1092 525 138 202 0 chr6 66475019 66475128 -83041909 + MT2B LTR ERVL 8 138 -463 6 1092 282 26 0 0 chr6 66475128 66475166 -83041871 + RLTR1B LTR ERV1 1 38 -474 6 1092 11328 48 24 0 chr6 66475166 66476591 -83040446 + RLTR1B-int LTR ERV1 1841 3299 0 6 1092 1126 50 16 10 chr6 66476591 66476775 -83040262 + RLTR1B LTR ERV1 1 226 -286 6 1092 1136 127 83 0 chr6 66476785 66476966 -83040071 + MT2B LTR ERVL 326 521 -80 6 1092 443 229 80 24 chr6 66479032 66479157 -83037880 + B1F SINE Alu 18 149 0 6 1092 708 157 90 0 chr6 66479532 66479666 -83037371 - B1_Mur4 SINE Alu 0 150 5 6 1092 1665 136 87 50 chr6 66480271 66480628 -83036409 + Lx LINE L1 6279 6648 -6 6 1092 318 353 52 49 chr6 66480836 66481122 -83035915 - ORR1C1 LTR MaLR -18 341 55 6 1092 820 217 58 26 chr6 66481391 66481593 -83035444 - ORR1C1 LTR MaLR -191 187 5 6 1092 386 233 12 0 chr6 66481609 66481695 -83035342 - ORR1C1 LTR MaLR -291 87 1 6 1092 605 217 108 0 chr6 66481816 66481936 -83035101 + RSINE1 SINE B4 4 136 -29 6 1092 22 70 0 0 chr6 66482070 66482113 -83034924 + AT_rich Low_complexity Low_complexity 1 43 0 6 1092 842 183 30 50 chr6 66482212 66482413 -83034624 + B3A SINE B2 2 198 0 6 1092 1153 64 0 0 chr6 66482495 66482636 -83034401 - B1_Mm SINE Alu -6 141 1 6 1092 608 333 50 32 chr6 66482866 66483086 -83033951 + ID_B1 SINE B4 1 224 0 6 1092 1158 83 83 0 chr6 66484268 66484292 -83032745 - B2_Mm1t SINE B2 0 193 170 6 1092 360 0 0 0 chr6 66484292 66484332 -83032705 + (TTA)n Simple_repeat Simple_repeat 3 42 0 6 1092 1158 83 83 0 chr6 66484332 66484476 -83032561 - B2_Mm1t SINE B2 -24 169 12 6 1092 264 267 66 13 chr6 66484409 66484485 -83032552 - B4A SINE B4 -211 81 2 6 1092 264 59 0 0 chr6 66484716 66484750 -83032287 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1092 746 191 13 20 chr6 66486576 66486726 -83030311 - B1_Mur2 SINE Alu 0 149 1 6 1092 200 367 122 6 chr6 66486857 66487038 -83029999 + L2 LINE L2 2737 2938 -481 6 1092 288 0 0 0 chr6 66487115 66487147 -83029890 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1092 213 39 0 0 chr6 66487826 66487852 -83029185 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1092 1149 75 0 0 chr6 66487852 66487999 -83029038 - B1_Mm SINE Alu 0 147 1 6 1092 895 183 123 12 chr6 66488458 66488629 -83028408 + B3 SINE B2 3 192 -24 6 1092 270 0 0 0 chr6 66488924 66488954 -83028083 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1092 464 300 75 37 chr6 66489235 66489422 -83027615 + B4A SINE B4 2 195 -97 6 1092 277 225 0 27 chr6 66491163 66491236 -83025801 + RLTR12B LTR ERVK 48 118 -410 6 1092 270 237 88 56 chr6 66491242 66491367 -83025670 + RLTR12B LTR ERVK 380 508 -20 6 1092 356 220 59 10 chr6 66491392 66491493 -83025544 - RLTR12B LTR ERVK -347 181 76 6 1092 3056 135 126 21 chr6 66492208 66492834 -83024203 + Lx3B LINE L1 6278 6969 -4 6 1092 3378 94 122 8 chr6 66492894 66493418 -83023619 + MT2B2 LTR ERVL 1 584 0 6 1092 486 248 20 0 chr6 66493984 66494085 -83022952 - B1F SINE Alu -40 109 7 6 1092 303 205 81 35 chr6 66494337 66494423 -83022614 + RLTR25A LTR ERVK 493 582 -521 6 1092 784 40 0 19 chr6 66494366 66494469 -83022568 + B1_Mus2 SINE Alu 47 147 0 6 1092 207 114 0 0 chr6 66494476 66494511 -83022526 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1092 476 284 58 24 chr6 66494559 66494765 -83022272 - L1M3 LINE L1 -412 5771 5559 6 1092 316 207 217 12 chr6 66495218 66495301 -83021736 + PB1D9 SINE Alu 14 113 -7 6 1092 355 298 83 14 chr6 66495712 66495930 -83021107 + L1M2 LINE L1 4990 5222 -921 6 1092 345 345 95 43 chr6 66495999 66496441 -83020596 + MT2A LTR ERVL 69 533 0 6 1092 335 291 70 27 chr6 66496446 66496633 -83020404 + L1M2 LINE L1 5254 5448 -849 6 1092 435 237 178 32 chr6 66497208 66497365 -83019672 - B3A SINE B2 -16 182 3 6 1092 334 284 14 102 chr6 66498067 66498331 -83018706 + L1VL1 LINE L1 45 399 -6023 6 1092 357 271 43 7 chr6 66498368 66498509 -83018528 + L1Md_F LINE L1 664 809 -5807 6 1092 2341 152 7 109 chr6 66498512 66499271 -83017766 + L1Md_F LINE L1 726 1393 -4490 6 1092 3293 148 2 16 chr6 66499268 66499873 -83017164 + L1Md_F LINE L1 3324 3919 -1964 6 1092 471 198 60 0 chr6 66499881 66499997 -83017040 + Lx7 LINE L1 6992 7114 -582 6 1092 798 213 55 41 chr6 66500000 66500352 -83016685 + Lx7 LINE L1 7119 7522 -174 1 1092 400 211 0 0 chr6 66500371 66500461 -83016576 + Lx7 LINE L1 7607 7696 0 1 1092 252 306 40 27 chr6 66500546 66500620 -83016417 + B4 SINE B4 170 244 -48 2 1092 4097 219 115 23 chr6 66500632 66501379 -83015658 + RMER12 LTR ERVK 4 767 -555 3 1092 432 0 0 0 chr6 66501379 66501427 -83015610 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 4 1092 4097 219 115 23 chr6 66501427 66501808 -83015229 + RMER12 LTR ERVK 768 1235 -87 3 1092 513 301 60 18 chr6 66501883 66502049 -83014988 + RMER12 LTR ERVK 1145 1317 -5 5 1092 200 265 0 42 chr6 66502120 66502191 -83014846 + (CATA)n Simple_repeat Simple_repeat 3 70 0 6 1092 340 248 131 8 chr6 66502716 66502846 -83014191 + B3 SINE B2 71 216 0 7 1092 429 288 74 40 chr6 66504794 66505119 -83011918 - Lx9 LINE L1 -1434 6210 5875 8 1092 810 221 81 10 chr6 66505560 66505757 -83011280 + B3 SINE B2 1 211 -5 9 1092 29 0 0 0 chr6 66505856 66505885 -83011152 + AT_rich Low_complexity Low_complexity 1 29 0 1 1092 295 316 0 58 chr6 66506288 66506392 -83010645 - PB1D10 SINE Alu -1 116 19 1 1092 258 32 0 0 chr6 66507562 66507593 -83009444 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1092 24 32 0 0 chr6 66507684 66507715 -83009322 + AT_rich Low_complexity Low_complexity 1 31 0 1 1092 1084 70 5 76 chr6 66507875 66508060 -83008977 - L1Md_F2 LINE L1 -8 6574 6403 1 1092 327 268 42 0 chr6 66508226 66508297 -83008740 - B1F1 SINE Alu -75 74 1 1 1092 369 141 35 0 chr6 66508317 66508402 -83008635 + (TA)n Simple_repeat Simple_repeat 2 89 0 1 1092 26 30 0 0 chr6 66508652 66508685 -83008352 + AT_rich Low_complexity Low_complexity 1 33 0 1 1092 614 279 14 132 chr6 66510224 66510443 -83006594 + ID_B1 SINE B4 1 193 -31 1 1092 331 335 33 7 chr6 66510760 66510913 -83006124 + RSINE1 SINE B4 3 159 -6 1 1092 604 223 66 10 chr6 66511171 66511402 -83005635 + L1_Mur3 LINE L1 3118 3354 -560 2 1092 855 291 14 18 chr6 66511462 66511738 -83005299 + L1_Rod LINE L1 463 737 -6871 2 1092 4089 277 57 29 chr6 66511750 66513029 -83004008 + ORR1D1-int LTR MaLR 56 1370 0 2 1092 1333 229 31 62 chr6 66513029 66513415 -83003622 + ORR1D1 LTR MaLR 1 374 0 2 1092 7587 239 65 38 chr6 66513418 66517693 -82999344 + L1_Rod LINE L1 746 5232 -645 2 1092 7460 58 0 4 chr6 66517693 66518638 -82998399 + L1Md_F2 LINE L1 5639 6579 -3 2 1092 7587 177 25 18 chr6 66518638 66518756 -82998281 + L1_Rod LINE L1 5233 5360 -517 2 1092 29965 88 8 42 chr6 66518758 66523791 -82993246 + L1_Mus4 LINE L1 515 5541 -342 2 1092 7391 76 6 16 chr6 66523791 66524796 -82992241 + L1Md_F2 LINE L1 5588 6582 0 2 1092 29965 91 7 35 chr6 66524796 66525523 -82991514 + L1_Mus4 LINE L1 5542 6086 -550 2 1092 410 95 0 35 chr6 66525524 66525611 -82991426 - L1_Mur1 LINE L1 -563 5323 5240 2 1092 27 0 0 0 chr6 66525624 66525651 -82991386 + AT_rich Low_complexity Low_complexity 1 27 0 2 1092 3703 114 5 2 chr6 66525665 66526253 -82990784 - L1_Mur1 LINE L1 -639 5247 4658 2 1092 1204 81 6 0 chr6 66526262 66526436 -82990601 + L1_Mus4 LINE L1 6392 6566 0 2 1092 552 147 32 0 chr6 66526779 66526874 -82990163 - B1_Mur4 SINE Alu -17 133 36 2 1092 409 287 52 37 chr6 66528054 66528188 -82988849 + B3 SINE B2 79 214 -2 2 1092 582 204 146 34 chr6 66528190 66528368 -82988669 + B3 SINE B2 4 201 -15 3 1092 251 259 259 0 chr6 66528426 66528557 -82988480 - Tigger5 DNA MER2_type -52 2354 2190 3 1092 203 56 56 0 chr6 66528559 66528595 -82988442 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3 1092 12283 115 37 2 chr6 66528598 66530690 -82986347 - L1_Mur1 LINE L1 -1220 4666 2502 3 1092 1711 133 18 57 chr6 66530880 66531215 -82985822 + RLTRETN_Mm LTR ERVK 1 322 0 3 1092 6992 83 7 54 chr6 66531216 66532345 -82984692 + ETnERV2-int LTR ERVK 2 1077 -3767 3 1092 19241 55 24 0 chr6 66532345 66534975 -82982062 + L1Md_F3 LINE L1 2894 5586 -297 3 1092 8045 53 0 1 chr6 66534975 66535972 -82981065 + L1Md_F3 LINE L1 5587 6582 -2 3 1092 14370 141 35 22 chr6 66536019 66540334 -82976703 + ETnERV2-int LTR ERVK 2356 7299 -107 3 1092 1637 146 18 57 chr6 66540334 66540669 -82976368 + RLTRETN_Mm LTR ERVK 1 322 0 3 1092 276 355 14 0 chr6 66541502 66541643 -82975394 + RodERV21-int LTR ERV1 717 859 -4132 3 1092 800 125 0 7 chr6 66542136 66542273 -82974764 + L1_Mus4 LINE L1 6495 6630 -6 3 1092 2307 341 39 30 chr6 66542342 66543719 -82973318 + RodERV21-int LTR ERV1 3407 4794 -197 3 1092 1943 98 26 3 chr6 66544238 66544545 -82972492 - L1_Mur1 LINE L1 -3372 2514 2201 3 1092 1770 249 63 15 chr6 66544545 66545022 -82972015 - RMER19C LTR ERVK -5 606 107 3 1092 308 103 69 0 chr6 66545054 66545112 -82971925 + L1_Mur3 LINE L1 4130 4191 -1689 4 1092 574 250 0 22 chr6 66545112 66545247 -82971790 + MT2B LTR ERVL 1 132 -401 4 1092 764 285 108 14 chr6 66545273 66545551 -82971486 + MT2B LTR ERVL 253 556 -45 4 1092 5067 176 37 151 chr6 66545625 66545788 -82971249 + Lx7 LINE L1 4184 4347 -1533 4 1092 2499 142 18 14 chr6 66545788 66546230 -82970807 + BGLII_A LTR ERVK 1 444 -1 4 1092 5067 176 37 151 chr6 66546230 66547836 -82969201 + Lx7 LINE L1 4348 5751 -129 4 1092 32026 85 6 16 chr6 66547831 66554387 -82962650 - L1Md_F2 LINE L1 -2 6580 108 4 1092 841 246 17 24 chr6 66554396 66554683 -82962354 - L1VL1 LINE L1 -6137 285 1 4 1092 844 204 41 18 chr6 66554684 66554904 -82962133 + Lx7 LINE L1 5744 5968 -1728 4 1092 5355 225 72 30 chr6 66555387 66556847 -82960190 + Lx7 LINE L1 6025 7545 -151 4 1092 324 168 20 0 chr6 66556854 66556933 -82960104 + Lx7 LINE L1 7628 7696 0 4 1092 362 342 143 13 chr6 66556938 66557092 -82959945 + B4 SINE B4 80 253 -39 4 1092 2852 209 40 28 chr6 66557092 66557775 -82959262 + RMER12 LTR ERVK 1 691 -631 4 1092 7272 116 30 31 chr6 66557775 66559570 -82957467 + Lx3A LINE L1 5133 6927 -54 4 1092 21 36 0 0 chr6 66559593 66559621 -82957416 + AT_rich Low_complexity Low_complexity 1 28 0 5 1092 1555 221 156 36 chr6 66559621 66559712 -82957325 + RMER12 LTR ERVK 685 768 -554 4 1092 297 0 0 0 chr6 66559712 66559745 -82957292 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 5 1092 1555 221 156 36 chr6 66559745 66560147 -82956890 + RMER12 LTR ERVK 769 1237 -85 4 1092 299 330 45 18 chr6 66560233 66560344 -82956693 + RMER12 LTR ERVK 1148 1261 -61 5 1092 26 50 0 0 chr6 66560759 66560799 -82956238 + AT_rich Low_complexity Low_complexity 1 40 0 5 1092 1151 111 0 11 chr6 66561063 66561237 -82955800 + B2_Mm2 SINE B2 1 172 -23 5 1092 697 179 159 28 chr6 66561241 66561430 -82955607 + MTD LTR MaLR 158 357 -62 5 1092 497 235 73 7 chr6 66561481 66561618 -82955419 + B3 SINE B2 71 216 0 5 1092 23 54 0 0 chr6 66561625 66561662 -82955375 + AT_rich Low_complexity Low_complexity 1 37 0 5 1092 27 0 0 0 chr6 66562197 66562224 -82954813 + AT_rich Low_complexity Low_complexity 1 27 0 5 1092 1004 147 0 6 chr6 66562690 66562868 -82954169 - Lx LINE L1 0 6654 6478 5 1092 481 254 53 80 chr6 66563771 66564109 -82952928 - Lx9 LINE L1 -1441 6203 5875 6 1092 715 246 95 12 chr6 66564714 66564883 -82952154 + B3 SINE B2 1 183 -33 6 1092 351 0 0 0 chr6 66564886 66564925 -82952112 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1092 266 113 38 0 chr6 66564990 66565043 -82951994 + B3 SINE B2 158 212 -4 6 1092 24 77 0 0 chr6 66565132 66565184 -82951853 + AT_rich Low_complexity Low_complexity 1 52 0 6 1092 246 334 136 7 chr6 66565570 66565682 -82951355 - B1F1 SINE Alu -28 121 10 6 1092 274 305 104 87 chr6 66567322 66567437 -82949600 - PB1D10 SINE Alu 0 117 1 6 1092 26 64 0 0 chr6 66567439 66567486 -82949551 + AT_rich Low_complexity Low_complexity 1 47 0 6 1092 554 300 14 132 chr6 66568731 66568950 -82948087 + ID_B1 SINE B4 1 193 -31 6 1092 320 358 26 51 chr6 66569272 66569428 -82947609 + RSINE1 SINE B4 8 159 -6 6 1092 3483 20 2 0 chr6 66569459 66569854 -82947183 + MTA_Mm LTR MaLR 1 396 0 7 1092 375 317 9 28 chr6 66570135 66570349 -82946688 + L1_Rod LINE L1 3154 3363 -2484 7 1092 545 296 15 36 chr6 66570403 66570599 -82946438 + L1_Rod LINE L1 17 208 -6964 7 1092 2428 221 72 26 chr6 66570596 66570725 -82946312 + L1_Rod LINE L1 1283 1411 -4436 7 1092 296 64 0 21 chr6 66570725 66570773 -82946264 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1092 2428 221 72 26 chr6 66570773 66571424 -82945613 + L1_Rod LINE L1 1412 2098 -3749 7 1092 2548 125 118 55 chr6 66571433 66571923 -82945114 + RLTR13D6 LTR ERVK 382 902 0 7 1092 1070 155 5 5 chr6 66571924 66572109 -82944928 + L1_Mm LINE L1 4461 4646 -1237 7 1092 6427 50 1 1 chr6 66572109 66572911 -82944126 + L1Md_F3 LINE L1 5779 6580 -4 7 1092 2507 65 0 0 chr6 66573063 66573386 -82943651 - L1_Mus1 LINE L1 -3 6564 6242 7 1092 726 301 82 67 chr6 66573794 66574197 -82942840 + MLT1D LTR MaLR 39 447 -58 7 1092 3445 176 27 34 chr6 66574227 66574931 -82942106 + Lx LINE L1 5956 6654 0 8 1092 251 291 37 25 chr6 66575012 66575093 -82941944 + B4 SINE B4 172 253 -39 8 1092 2646 225 48 21 chr6 66575093 66575766 -82941271 + RMER12 LTR ERVK 1 691 -631 8 1092 2796 148 138 24 chr6 66575766 66576362 -82940675 + L1_Mur1 LINE L1 5133 5796 -90 8 1092 29592 86 13 36 chr6 66576373 66581646 -82935391 + Lx3A LINE L1 398 5575 -308 8 1092 7868 52 7 0 chr6 66581646 66582632 -82934405 + L1Md_F2 LINE L1 5588 6580 -2 8 1092 5483 103 0 8 chr6 66582637 66583428 -82933609 + L1_Mus1 LINE L1 5783 6567 0 8 136 20071 143 15 22 chr6 66583428 66584987 -82932050 + Lx3A LINE L1 5538 6924 -57 8 1093 699 217 99 49 chr6 66585031 66585128 -82931909 + RMER12 LTR ERVK 677 767 -555 8 1093 423 0 0 0 chr6 66585128 66585175 -82931862 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 8 1093 861 242 87 40 chr6 66585175 66585570 -82931467 + RMER12 LTR ERVK 768 1237 -85 8 1093 384 319 94 19 chr6 66585655 66585815 -82931222 + RMER12 LTR ERVK 1147 1318 -4 8 1093 222 256 32 32 chr6 66585849 66585942 -82931095 + (CATA)n Simple_repeat Simple_repeat 4 96 0 8 1093 1047 110 7 0 chr6 66586068 66586214 -82930823 - B1_Mm SINE Alu 0 147 1 9 1093 29 28 0 0 chr6 66586348 66586384 -82930653 + AT_rich Low_complexity Low_complexity 1 36 0 9 1093 437 256 51 29 chr6 66586668 66586805 -82930232 + B3 SINE B2 71 210 -6 9 1093 949 145 12 6 chr6 66587880 66588053 -82928984 - Lx LINE L1 -5 6649 6476 9 1093 572 266 45 67 chr6 66588953 66589283 -82927754 - Lx9 LINE L1 -1447 6197 5875 9 1093 792 217 89 11 chr6 66589889 66590061 -82926976 + B3 SINE B2 1 186 -30 9 1093 249 57 0 0 chr6 66590061 66590096 -82926941 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1093 792 217 89 11 chr6 66590096 66590114 -82926923 + B3 SINE B2 187 206 -10 9 1093 1075 129 0 53 chr6 66590301 66590489 -82926548 + B2_Mm2 SINE B2 4 181 -14 9 1093 325 317 0 63 chr6 66590854 66590965 -82926072 - PB1D10 SINE Alu -1 116 13 9 1093 2286 96 33 12 chr6 66590975 66591312 -82925725 - L1Md_F2 LINE L1 -12 6570 6227 9 1093 245 291 124 88 chr6 66592941 66593054 -82923983 - PB1D10 SINE Alu 0 117 1 1 1093 24 0 0 0 chr6 66593238 66593262 -82923775 + AT_rich Low_complexity Low_complexity 1 24 0 1 1093 27 29 0 0 chr6 66593358 66593392 -82923645 + AT_rich Low_complexity Low_complexity 1 34 0 1 1093 180 0 0 0 chr6 66593588 66593608 -82923429 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1093 563 293 5 138 chr6 66594385 66594595 -82922442 + ID_B1 SINE B4 1 182 -42 1 1093 327 378 28 7 chr6 66594932 66595076 -82921961 + RSINE1 SINE B4 13 159 -6 1 1093 24 0 0 0 chr6 66595108 66595132 -82921905 + AT_rich Low_complexity Low_complexity 1 24 0 1 1093 272 294 32 7 chr6 66595376 66595530 -82921507 + L1_Rod LINE L1 3206 3363 -2484 1 1093 682 284 0 11 chr6 66595558 66595743 -82921294 + L1_Rod LINE L1 474 656 -6952 1 1093 495 255 25 0 chr6 66595728 66595885 -82921152 + L1_Rod LINE L1 1283 1443 -4404 1 1093 545 185 23 8 chr6 66595890 66596008 -82921029 - RLTR9D LTR ERVK -2 401 266 1 1093 15455 117 4 0 chr6 66596008 66598488 -82918549 + L1_Mm LINE L1 1870 4358 -1525 1 1093 189 0 0 0 chr6 66598488 66598509 -82918528 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1093 39469 9 0 2 chr6 66598535 66606157 -82910880 - L1Md_A LINE L1 0 6582 1 1 1093 4236 98 0 0 chr6 66606160 66606792 -82910245 + L1_Mm LINE L1 4345 4976 -907 1 1093 2111 129 27 67 chr6 66606792 66607166 -82909871 - RLTR10D LTR ERVK 0 359 1 1 1093 3114 80 0 0 chr6 66607166 66607581 -82909456 - IAP-d-int LTR ERVK 0 6542 6128 1 1093 7471 73 10 0 chr6 66607584 66608590 -82908447 - IAP-d-int LTR ERVK -521 6021 5006 1 1093 743 231 0 55 chr6 66608590 66608810 -82908227 - IAP-d-int LTR ERVK -6040 502 295 1 1093 1141 71 0 13 chr6 66608787 66608944 -82908093 - IAP-d-int LTR ERVK -6387 155 1 1 1093 2253 128 3 68 chr6 66608944 66609328 -82907709 - RLTR10D LTR ERVK 0 359 1 1 1093 5308 119 30 23 chr6 66609328 66609638 -82907399 + L1_Mus1 LINE L1 4971 5292 -591 1 1093 1698 76 55 0 chr6 66609638 66609874 -82907163 + L1_Mus1 LINE L1 6319 6567 0 1 1093 7086 84 11 6 chr6 66609874 66611254 -82905783 + L1_Mus1 LINE L1 5293 6567 0 1 1093 22708 131 4 9 chr6 66611266 66616042 -82900995 + L1VL1 LINE L1 409 5157 -726 1 1093 872 222 22 9 chr6 66616031 66616254 -82900783 + Lx7 LINE L1 5735 5960 -1736 1 1093 5026 242 62 34 chr6 66616750 66617369 -82899668 + Lx7 LINE L1 6030 6650 -1046 1 1093 1541 54 0 0 chr6 66617369 66617554 -82899483 + B2_Mm1t SINE B2 2 186 -7 1 1093 5026 242 62 34 chr6 66617554 66618387 -82898650 + Lx7 LINE L1 6651 7522 -174 1 1093 309 222 0 0 chr6 66618406 66618478 -82898559 + Lx7 LINE L1 7607 7678 -18 1 1093 4267 164 42 12 chr6 66618489 66619326 -82897711 + L1VL2 LINE L1 95 956 -5379 1 1093 898 189 43 47 chr6 66619328 66619561 -82897476 + RMER12 LTR ERVK 491 722 -600 1 1093 3781 110 6 27 chr6 66619561 66620185 -82896852 + Lx3A LINE L1 5173 5783 -103 1 1093 2959 17 3 0 chr6 66620182 66620539 -82896498 + L1Md_F2 LINE L1 5606 5963 -619 1 1093 9732 84 6 2 chr6 66620541 66622262 -82894775 + L1Md_Gf LINE L1 870 2654 -3232 1 1093 3362 102 52 32 chr6 66622726 66623032 -82894005 - RLTR45-int LTR ERVK -6673 571 284 1 1093 279 0 0 0 chr6 66623032 66623063 -82893974 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1093 3362 102 52 32 chr6 66623063 66623316 -82893721 - RLTR45-int LTR ERVK -6961 283 2 1 1093 1949 174 36 26 chr6 66623316 66623700 -82893337 - RLTR45 LTR ERVK 0 482 95 1 1093 3706 70 4 0 chr6 66623700 66624219 -82892818 + L1Md_F2 LINE L1 6079 6582 0 1 1093 2829 136 79 3 chr6 66624236 66625243 -82891794 - MYSERV16_I-int LTR ERVK -45 2281 1199 1 1093 207 0 0 0 chr6 66625244 66625267 -82891770 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1093 1638 117 200 2 chr6 66625268 66625728 -82891309 + Lx3A LINE L1 5784 6334 -647 1 1093 1944 100 7 14 chr6 66625728 66626012 -82891025 + MTB LTR MaLR 1 282 -118 1 1093 2964 109 41 41 chr6 66626012 66626498 -82890539 + RLTR1C LTR ERV1 1 486 -17 1 1093 851 90 0 8 chr6 66626515 66626638 -82890399 + MTB LTR MaLR 279 400 0 1 1093 2600 123 5 0 chr6 66626640 66627038 -82889999 + Lx3A LINE L1 6332 6731 -250 1 1093 912 158 0 0 chr6 66627038 66627241 -82889796 + (TA)n Simple_repeat Simple_repeat 1 203 0 1 1093 333 62 0 0 chr6 66627282 66627330 -82889707 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1093 225 94 0 0 chr6 66627334 66627366 -82889671 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1093 767 265 79 28 chr6 66627444 66627696 -82889341 + RMER12 LTR ERVK 973 1237 -85 1 1093 462 295 33 44 chr6 66627775 66627956 -82889081 + RMER12 LTR ERVK 1144 1322 0 1 1093 459 256 51 29 chr6 66628596 66628733 -82888304 + B3 SINE B2 71 210 -6 1 1093 861 162 11 6 chr6 66629812 66629986 -82887051 - Lx LINE L1 -4 6650 6476 1 1093 414 285 68 52 chr6 66630874 66631200 -82885837 - Lx9 LINE L1 -1441 6203 5873 1 1093 722 244 92 5 chr6 66631807 66631992 -82885045 + B3 SINE B2 1 201 -15 1 1093 225 139 0 0 chr6 66631993 66632036 -82885001 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1093 1149 107 0 53 chr6 66632228 66632416 -82884621 + B2_Mm2 SINE B2 4 181 -14 1 1093 283 324 18 54 chr6 66632757 66632868 -82884169 - PB1D10 SINE Alu -1 116 10 1 1093 234 128 0 0 chr6 66634074 66634113 -82882924 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1093 35 24 0 0 chr6 66634136 66634178 -82882859 + AT_rich Low_complexity Low_complexity 1 42 0 1 1093 280 297 13 39 chr6 66634486 66634563 -82882474 - B1F1 SINE Alu -74 75 1 1 1093 306 20 39 19 chr6 66634703 66634755 -82882282 + (TTG)n Simple_repeat Simple_repeat 2 54 0 1 1093 1040 83 0 0 chr6 66634758 66634890 -82882147 - B1_Mm SINE Alu -14 133 2 1 1093 440 319 22 153 chr6 66636049 66636271 -82880766 + ID_B1 SINE B4 1 193 -31 1 1093 404 263 52 9 chr6 66637032 66637243 -82879794 + L1_Mur3 LINE L1 3131 3350 -2530 1 1093 900 293 18 21 chr6 66637293 66637579 -82879458 + L1_Rod LINE L1 17 301 -6871 1 1093 2374 273 35 10 chr6 66637589 66638273 -82878764 + ORR1D-int LTR MaLR 54 754 -616 1 1093 1543 161 32 22 chr6 66638291 66638653 -82878384 + RLTR45 LTR ERVK 1 413 -69 1 1093 5219 74 105 6 chr6 66638653 66639443 -82877594 - RLTR13A3 LTR ERVK 0 978 111 1 1093 549 101 0 0 chr6 66639443 66639522 -82877515 + RLTR45 LTR ERVK 404 482 0 1 1093 3292 103 54 32 chr6 66639522 66639774 -82877263 + RLTR45-int LTR ERVK 1 268 -6976 1 1093 279 0 0 0 chr6 66639774 66639805 -82877232 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1 1093 3292 103 54 32 chr6 66639805 66640111 -82876926 + RLTR45-int LTR ERVK 269 570 -6674 1 1093 9924 90 26 8 chr6 66640575 66642828 -82874209 - L1Md_F LINE L1 -3232 2651 356 1 1093 335 245 0 11 chr6 66642828 66642923 -82874114 - L1_Rod LINE L1 -2513 3334 3241 1 1093 627 81 0 0 chr6 66642923 66643009 -82874028 + (TC)n Simple_repeat Simple_repeat 2 87 0 1 1093 794 252 60 16 chr6 66643018 66643401 -82873636 - L1_Rod LINE L1 -2561 3286 2887 1 1093 661 68 0 10 chr6 66643403 66643507 -82873530 - L1_Mus1 LINE L1 0 6567 6465 1 1093 6539 60 6 0 chr6 66643502 66644329 -82872708 - L1Md_F2 LINE L1 -1 6581 5750 1 1093 3444 99 6 8 chr6 66644331 66644947 -82872090 - L1Md_F LINE L1 -5501 1223 631 1 1093 5410 82 9 8 chr6 66644948 66645725 -82871312 - L1_Mus1 LINE L1 -89 6478 5701 1 1093 417 239 0 47 chr6 66645721 66645870 -82871167 - L1_Rod LINE L1 -2940 2907 2766 1 1093 804 274 10 5 chr6 66645945 66646150 -82870887 - B3 SINE B2 -6 210 5 1 1093 4445 12 0 0 chr6 66646190 66646688 -82870349 - L1Md_A LINE L1 0 6582 6085 1 1093 2251 206 50 28 chr6 66646739 66646913 -82870124 - L1_Rod LINE L1 -3105 2742 2565 1 1093 1885 167 0 24 chr6 66646913 66647250 -82869787 - ORR1A4 LTR MaLR 0 329 1 1 1093 2251 206 50 28 chr6 66647250 66647719 -82869318 - L1_Rod LINE L1 -3283 2564 2085 1 1093 2448 218 31 7 chr6 66647820 66648361 -82868676 - RMER1A Other Other -29 1001 448 1 1093 544 298 22 133 chr6 66648788 66649013 -82868024 + ID_B1 SINE B4 1 200 -24 1 1093 380 371 7 19 chr6 66649328 66649482 -82867555 + RSINE1 SINE B4 8 159 -6 1 1093 21 0 0 0 chr6 66649516 66649537 -82867500 + AT_rich Low_complexity Low_complexity 1 21 0 1 1093 430 263 16 45 chr6 66649751 66649994 -82867043 + L1_Rod LINE L1 3136 3371 -2476 1 1093 639 269 5 36 chr6 66650016 66650209 -82866828 + L1_Rod LINE L1 458 644 -6964 1 1093 3171 209 26 42 chr6 66650206 66651125 -82865912 + L1_Rod LINE L1 1283 2186 -3661 1 1093 4471 72 0 53 chr6 66651132 66651777 -82865260 + L1Md_F2 LINE L1 5972 6582 0 1 1093 1748 208 62 31 chr6 66651782 66652050 -82864987 - L1_Rod LINE L1 -2714 3133 2857 1 1093 2733 75 141 139 chr6 66652050 66652561 -82864476 - RLTR1B LTR ERV1 0 512 1 1 1093 1748 208 62 31 chr6 66652561 66652844 -82864193 - L1_Rod LINE L1 -2991 2856 2565 1 1093 1826 167 0 41 chr6 66652844 66652982 -82864055 - ORR1A4 LTR MaLR 0 329 195 1 1093 5393 96 75 58 chr6 66652982 66653860 -82863177 + RLTR13B1 LTR ERVK 1 893 0 1 1093 1826 167 0 41 chr6 66653860 66654064 -82862973 - ORR1A4 LTR MaLR -135 194 1 1 1093 1593 248 33 35 chr6 66654064 66654608 -82862429 - L1_Rod LINE L1 -3278 2569 2027 1 1093 3129 244 33 109 chr6 66654602 66655867 -82861170 - RMER1A Other Other -5 1025 45 1 1093 1769 222 61 48 chr6 66655977 66656454 -82860583 - RLTR16 LTR ERVK -12 493 11 1 1093 607 295 36 5 chr6 66656464 66656658 -82860379 - RMER1B Other Other -866 200 1 1 1093 315 130 0 0 chr6 66656815 66656869 -82860168 + (GATTG)n Simple_repeat Simple_repeat 2 55 0 1 1093 28 29 0 0 chr6 66657087 66657122 -82859915 + AT_rich Low_complexity Low_complexity 1 35 0 1 1093 274 108 106 0 chr6 66657133 66657193 -82859844 - B2_Mm2 SINE B2 -102 114 46 1 1093 1204 108 11 0 chr6 66657249 66657425 -82859612 - B2_Mm1t SINE B2 -14 179 2 1 1093 1315 197 37 138 chr6 66657435 66658023 -82859014 - L1_Rod LINE L1 -3877 1970 1442 1 1093 183 114 0 0 chr6 66658024 66658059 -82858978 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1093 1418 215 49 8 chr6 66658094 66658575 -82858462 - L1_Rod LINE L1 -4410 1437 938 1 1093 24 0 0 0 chr6 66659846 66659870 -82857167 + AT_rich Low_complexity Low_complexity 1 24 0 1 1093 3050 67 2 12 chr6 66659900 66660308 -82856729 + L1_Mus2 LINE L1 6162 6565 -1 1 1093 3289 158 35 21 chr6 66660441 66661060 -82855977 + Lx LINE L1 6027 6654 0 1 1093 291 338 152 21 chr6 66661097 66661242 -82855795 + B4 SINE B4 80 243 -49 1 1093 1335 251 44 26 chr6 66661262 66661651 -82855386 + RMER12 LTR ERVK 1 396 -926 1 1093 1465 158 52 19 chr6 66662198 66662508 -82854529 + RMER12 LTR ERVK 372 691 -631 1 1093 7861 117 33 6 chr6 66662508 66664249 -82852788 + Lx3A LINE L1 5133 6923 -58 1 1093 23 33 0 0 chr6 66664264 66664294 -82852743 + AT_rich Low_complexity Low_complexity 1 30 0 1 1093 1217 283 61 59 chr6 66664294 66664396 -82852641 + RMER12 LTR ERVK 677 768 -554 1 1093 222 91 0 0 chr6 66664396 66664429 -82852608 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 1 1093 1217 283 61 59 chr6 66664429 66664882 -82852155 + RMER12 LTR ERVK 769 1233 -89 1 1093 503 281 41 30 chr6 66664970 66665139 -82851898 + RMER12 LTR ERVK 1148 1318 -4 1 1093 25 31 0 0 chr6 66665486 66665518 -82851519 + AT_rich Low_complexity Low_complexity 1 32 0 1 1093 453 256 51 29 chr6 66665801 66665938 -82851099 + B3 SINE B2 71 210 -6 1 1093 853 171 12 6 chr6 66667012 66667183 -82849854 - Lx LINE L1 -7 6647 6476 1 1093 464 279 41 68 chr6 66668069 66668407 -82848630 - Lx9 LINE L1 -1441 6203 5875 1 1093 2027 35 4 0 chr6 66668642 66668899 -82848138 + L1Md_F3 LINE L1 5899 6156 -428 1 1093 529 307 14 133 chr6 66669771 66669989 -82847048 + ID_B1 SINE B4 1 192 -32 1 1093 33850 60 1 2 chr6 66670538 66674772 -82842265 - L1Md_F3 LINE L1 0 6584 2351 1 1093 180 0 0 0 chr6 66674772 66674792 -82842245 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1093 33850 60 3 1 chr6 66674792 66676553 -82840484 - L1Md_F3 LINE L1 -3533 2350 586 1 1093 7408 112 4 0 chr6 66676554 66677711 -82839326 - L1_Mm LINE L1 -777 5106 3945 1 1093 266 265 20 20 chr6 66677725 66677825 -82839212 - L1Md_F3 LINE L1 -6351 265 166 1 1093 529 307 14 133 chr6 66678680 66678898 -82838139 - ID_B1 SINE B4 -32 192 1 2 1093 446 286 41 68 chr6 66679854 66680192 -82836845 + Lx9 LINE L1 5875 6203 -1441 2 1093 847 171 12 6 chr6 66681084 66681255 -82835782 + Lx LINE L1 6476 6647 -7 2 1093 466 256 51 29 chr6 66682330 66682467 -82834570 - B3 SINE B2 -6 210 71 2 1093 25 31 0 0 chr6 66682750 66682782 -82834255 + AT_rich Low_complexity Low_complexity 1 32 0 2 1093 469 291 41 29 chr6 66683137 66683307 -82833730 - RMER12 LTR ERVK -4 1318 1147 2 1093 1054 274 163 22 chr6 66683392 66683802 -82833235 - RMER12 LTR ERVK -85 1237 770 2 1093 210 167 0 0 chr6 66683802 66683838 -82833199 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 2 1093 180 152 0 0 chr6 66683839 66683872 -82833165 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 2 1093 4155 129 5 24 chr6 66684169 66685135 -82831902 - L1Md_A LINE L1 -4515 1368 441 2 1093 26680 130 10 24 chr6 66685497 66690777 -82826260 + L1Md_F3 LINE L1 369 5586 -297 2 1093 8031 45 4 3 chr6 66690778 66691772 -82825265 + L1Md_F3 LINE L1 5587 6581 -3 2 1093 365 261 110 37 chr6 66691787 66691853 -82825184 + RMER12 LTR ERVK 707 767 -555 2 1093 318 26 0 0 chr6 66691853 66691892 -82825145 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 2 1093 724 307 70 23 chr6 66691892 66692299 -82824738 + RMER12 LTR ERVK 768 1249 -73 2 1093 1195 191 170 0 chr6 66692325 66692602 -82824435 + L1Md_F2 LINE L1 306 629 -5987 2 1093 30118 50 1 100 chr6 66692600 66697786 -82819251 + L1Md_F2 LINE L1 928 5586 -297 2 1093 7974 47 3 4 chr6 66697786 66698780 -82818257 + L1Md_F2 LINE L1 5587 6582 0 2 1093 7974 47 3 4 chr6 66698780 66698791 -82818246 + L1Md_F2 LINE L1 6561 6570 -12 2 1093 7988 130 23 3 chr6 66698795 66700914 -82816123 + L1_Mus4 LINE L1 4469 6631 -5 2 1093 300 283 102 19 chr6 66701014 66701122 -82815915 + RMER12 LTR ERVK 1145 1261 -61 2 1093 223 333 0 0 chr6 66701182 66701314 -82815723 + T-rich Low_complexity Low_complexity 1 132 0 2 1093 563 157 73 34 chr6 66701314 66701492 -82815545 - RMER17C LTR ERVK -135 275 91 2 1093 1654 113 0 8 chr6 66701495 66701744 -82815293 - L1_Mus2 LINE L1 -20 6546 6300 2 1093 2401 68 0 0 chr6 66701740 66702061 -82814976 + L1_Mus2 LINE L1 5930 6250 -316 2 1093 258 286 53 71 chr6 66702061 66702174 -82814863 + RMER12 LTR ERVK 1212 1322 0 2 1093 232 236 44 22 chr6 66702204 66702295 -82814742 + (CATA)n Simple_repeat Simple_repeat 4 96 0 2 1093 27 73 0 0 chr6 66702484 66702539 -82814498 + AT_rich Low_complexity Low_complexity 1 55 0 2 1093 999 165 0 6 chr6 66702794 66702965 -82814072 + B2_Mm2 SINE B2 1 170 -25 2 1093 463 180 289 21 chr6 66702997 66703139 -82813898 + MTD LTR MaLR 172 351 -68 2 1093 490 242 68 8 chr6 66703201 66703334 -82813703 + B3 SINE B2 71 211 -5 2 1093 982 154 0 17 chr6 66704404 66704582 -82812455 - Lx LINE L1 -4 6650 6476 2 1093 1106 75 20 0 chr6 66706058 66706205 -82810832 + B1_Mur4 SINE Alu 1 150 0 2 1093 460 301 40 40 chr6 66706500 66706701 -82810336 + B3 SINE B2 1 201 -15 2 1093 180 111 0 0 chr6 66706702 66706729 -82810308 + (CATATA)n Simple_repeat Simple_repeat 6 32 0 2 1093 22 80 0 0 chr6 66706829 66706879 -82810158 + AT_rich Low_complexity Low_complexity 1 50 0 2 1093 215 368 57 11 chr6 66707231 66707319 -82809718 - B1F2 SINE Alu -33 116 25 2 1093 521 110 10 0 chr6 66708486 66708586 -82808451 + (TG)n Simple_repeat Simple_repeat 1 101 0 2 1093 236 321 148 0 chr6 66709017 66709098 -82807939 - PB1D10 SINE Alu -12 105 13 2 1093 22 35 0 0 chr6 66709398 66709427 -82807610 + AT_rich Low_complexity Low_complexity 1 29 0 2 1093 462 299 19 130 chr6 66710396 66710611 -82806426 + ID_B1 SINE B4 2 192 -32 2 1093 311 322 0 11 chr6 66710931 66711025 -82806012 + RSINE1 SINE B4 4 96 -69 2 1093 3039 130 43 0 chr6 66711056 66711549 -82805488 + L1VL1 LINE L1 1 514 -5908 2 1093 14209 101 12 15 chr6 66711549 66712290 -82804747 - L1Md_F LINE L1 -2359 3524 2779 2 1093 1172 55 7 0 chr6 66712290 66712436 -82804601 - B1_Mus1 SINE Alu 0 148 2 2 1093 14209 128 22 12 chr6 66712436 66714759 -82802278 - L1Md_F LINE L1 -3105 2778 504 2 1093 4397 151 26 4 chr6 66714760 66715556 -82801481 - L1_Mm LINE L1 -148 5735 4922 2 136 2502 162 70 48 chr6 66715556 66716115 -82800922 + L1Md_F LINE L1 290 860 -5659 2 1094 33802 35 0 0 chr6 66716114 66721541 -82795496 + L1Md_T LINE L1 66 5589 -297 2 1094 8977 8 0 0 chr6 66721542 66722537 -82794500 + L1Md_T LINE L1 5591 6585 0 2 1094 1430 104 124 0 chr6 66722539 66722789 -82794248 + L1Md_F LINE L1 843 1123 -5396 2 1094 1738 133 42 16 chr6 66722789 66723102 -82793935 + Lx3A LINE L1 6607 6927 -54 2 1094 719 100 9 0 chr6 66723129 66723239 -82793798 + (GAAA)n Simple_repeat Simple_repeat 3 113 0 2 1094 873 234 74 46 chr6 66723240 66723631 -82793406 + RMER12 LTR ERVK 701 1144 -178 2 1094 324 277 52 35 chr6 66723776 66723892 -82793145 + RMER12 LTR ERVK 1145 1262 -60 2 1094 33 0 0 0 chr6 66723892 66723925 -82793112 + AT_rich Low_complexity Low_complexity 1 33 0 2 1094 4127 69 21 29 chr6 66723925 66724506 -82792531 - Lx3_Mus LINE L1 0 7009 6434 2 1094 366 220 112 77 chr6 66724514 66724657 -82792380 - B2_Mm2 SINE B2 -8 187 40 2 1094 1385 99 0 10 chr6 66724716 66724920 -82792117 - L1Md_F2 LINE L1 -12 6570 6369 2 1094 32 67 0 0 chr6 66725293 66725353 -82791684 + AT_rich Low_complexity Low_complexity 1 60 0 2 1094 1145 129 0 6 chr6 66725610 66725781 -82791256 + B2_Mm2 SINE B2 1 170 -25 2 1094 597 165 191 14 chr6 66725848 66725989 -82791048 + MTD LTR MaLR 191 356 -63 2 1094 475 250 73 7 chr6 66726043 66726180 -82790857 + B3 SINE B2 71 216 0 2 1094 325 271 93 53 chr6 66728100 66728423 -82788614 - Lx9 LINE L1 -1434 6210 5875 2 1094 762 228 95 12 chr6 66729025 66729194 -82787843 + B3 SINE B2 2 184 -32 2 1094 465 19 0 0 chr6 66729198 66729252 -82787785 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1094 201 147 0 0 chr6 66729254 66729288 -82787749 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1094 22 56 0 0 chr6 66729405 66729441 -82787596 + AT_rich Low_complexity Low_complexity 1 36 0 2 1094 260 367 0 0 chr6 66729853 66729932 -82787105 - PB1D10 SINE Alu -24 93 15 2 1094 306 180 0 0 chr6 66731083 66731144 -82785893 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1094 21 36 0 0 chr6 66731235 66731263 -82785774 + AT_rich Low_complexity Low_complexity 1 28 0 2 1094 290 301 136 0 chr6 66731551 66731654 -82785383 - PB1D10 SINE Alu 0 117 1 2 1094 23 33 0 0 chr6 66731954 66731984 -82785053 + AT_rich Low_complexity Low_complexity 1 30 0 2 1094 207 0 0 0 chr6 66732297 66732320 -82784717 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1094 486 285 28 139 chr6 66733154 66733370 -82783667 + ID_B1 SINE B4 2 193 -31 2 1094 302 349 26 7 chr6 66733689 66733842 -82783195 + RSINE1 SINE B4 4 159 -6 2 1094 5841 208 41 91 chr6 66734020 66736059 -82780978 + L1_Rod LINE L1 1522 3459 -2388 2 1094 693 0 0 0 chr6 66736462 66736539 -82780498 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 1094 1580 236 81 29 chr6 66736906 66737459 -82779578 - L1_Rod LINE L1 -1554 4293 3712 2 1094 7247 70 9 1 chr6 66737489 66738682 -82778355 - L1Md_F2 LINE L1 -3 6579 5377 2 1094 3786 82 8 0 chr6 66738682 66739181 -82777856 + L1_Mus1 LINE L1 6059 6561 -6 2 1094 6449 65 33 7 chr6 66739200 66740097 -82776940 - MTA_Mm-int LTR MaLR -177 921 1 2 1094 3148 46 5 15 chr6 66740097 66740308 -82776729 - MTA_Mm LTR MaLR 0 396 188 2 1094 180 0 0 0 chr6 66740308 66740328 -82776709 + (TC)n Simple_repeat Simple_repeat 2 21 0 2 1094 1884 43 0 8 chr6 66740329 66740565 -82776472 - L1Md_F2 LINE L1 -12 6570 6337 2 1094 3148 46 5 15 chr6 66740565 66740751 -82776286 - MTA_Mm LTR MaLR -209 187 1 2 1094 10214 200 130 20 chr6 66740763 66743666 -82773371 - L1_Mur3 LINE L1 -1208 4672 1451 2 1094 471 171 76 0 chr6 66743809 66743914 -82773123 + L1_Mur3 LINE L1 3514 3626 -2254 2 1094 500 261 58 78 chr6 66743917 66744071 -82772966 + B4 SINE B4 71 221 -71 2 1094 1083 72 0 0 chr6 66743937 66744075 -82772962 + B1_Mm SINE Alu 9 146 -1 2 1094 2108 183 13 36 chr6 66744084 66744561 -82772476 + L1_Mur3 LINE L1 3628 4093 -1787 2 1094 1167 88 0 0 chr6 66744570 66744718 -82772319 - B1_Mus1 SINE Alu 0 148 1 2 1094 268 170 0 0 chr6 66744719 66744772 -82772265 + L1_Mur3 LINE L1 4080 4132 -1748 2 1094 1233 237 7 14 chr6 66744772 66745054 -82771983 - RMER19C LTR ERVK 0 611 332 2 1094 1134 156 9 9 chr6 66745057 66745283 -82771754 + L1_Mur3 LINE L1 4265 4490 -1390 2 1094 563 207 164 82 chr6 66745291 66745486 -82771551 - RMER19B LTR ERVK -366 536 326 2 1094 343 103 69 0 chr6 66745511 66745569 -82771468 + L1_Mur3 LINE L1 4129 4190 -1690 2 1094 866 286 116 101 chr6 66745570 66746095 -82770942 + MT2B LTR ERVL 1 601 0 2 1094 6556 184 46 41 chr6 66746099 66747850 -82769187 + Lx7 LINE L1 4197 5968 -1728 2 1094 3430 221 190 101 chr6 66748329 66749137 -82767900 + Lx7 LINE L1 6030 6978 -718 2 1094 311 188 98 24 chr6 66749137 66749219 -82767818 + RLTR25B LTR ERVK 422 509 -519 2 1094 813 48 0 0 chr6 66749159 66749262 -82767775 + B1_Mus2 SINE Alu 45 147 0 2 1094 3430 221 190 101 chr6 66749262 66749871 -82767166 + Lx7 LINE L1 6979 7696 0 2 1094 213 294 14 42 chr6 66749873 66749944 -82767093 + B4 SINE B4 99 167 -125 2 1094 2606 227 43 19 chr6 66749998 66750673 -82766364 + RMER12 LTR ERVK 1 691 -631 2 1094 6954 104 105 16 chr6 66750673 66752387 -82764650 + Lx3A LINE L1 5133 6927 -54 2 1094 216 0 0 0 chr6 66752402 66752426 -82764611 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2 1094 754 191 99 33 chr6 66752430 66752517 -82764520 + RMER12 LTR ERVK 685 768 -554 2 1094 240 35 0 0 chr6 66752517 66752546 -82764491 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 2 1094 981 224 78 40 chr6 66752546 66752943 -82764094 + RMER12 LTR ERVK 769 1233 -89 2 1094 418 303 157 7 chr6 66753032 66753185 -82763852 + RMER12 LTR ERVK 1147 1322 0 2 1094 222 277 15 15 chr6 66753214 66753280 -82763757 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1094 29 70 0 0 chr6 66753497 66753554 -82763483 + AT_rich Low_complexity Low_complexity 1 57 0 2 1094 1267 82 0 6 chr6 66753822 66753993 -82763044 + B2_Mm2 SINE B2 1 170 -25 2 1094 507 196 255 7 chr6 66754039 66754188 -82762849 + MTD LTR MaLR 172 357 -62 2 1094 441 250 78 8 chr6 66754256 66754385 -82762652 + B3 SINE B2 79 216 0 2 1094 1030 102 6 28 chr6 66755452 66755634 -82761403 - Lx LINE L1 -1 6653 6476 2 1094 483 290 65 43 chr6 66756457 66756781 -82760256 - Lx9 LINE L1 -1441 6203 5873 2 1094 830 216 87 5 chr6 66757388 66757583 -82759454 + B3 SINE B2 1 211 -5 2 1094 234 0 0 0 chr6 66757682 66757708 -82759329 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1094 295 351 11 0 chr6 66758148 66758242 -82758795 - PB1D10 SINE Alu -13 104 10 3 1094 282 125 0 0 chr6 66759434 66759482 -82757555 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1094 306 294 0 0 chr6 66759928 66759996 -82757041 - PB1D10 SINE Alu -49 68 1 3 1094 181 134 35 47 chr6 66760017 66760103 -82756934 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 3 1094 583 295 14 132 chr6 66761058 66761277 -82755760 + ID_B1 SINE B4 1 193 -31 3 1094 396 352 29 7 chr6 66761586 66761726 -82755311 + RSINE1 SINE B4 3 145 -20 3 1094 424 36 0 0 chr6 66761920 66761976 -82755061 + B1_Mm SINE Alu 90 145 -2 3 1094 446 301 15 7 chr6 66761991 66762128 -82754909 + L1_Rod LINE L1 164 301 -6871 3 1094 2471 257 50 22 chr6 66762140 66762820 -82754217 + ORR1A2-int LTR MaLR 56 754 -616 3 1094 9938 130 18 7 chr6 66762830 66765346 -82751691 + Lx LINE L1 4025 6566 -88 3 1094 9140 87 2 47 chr6 66765342 66767505 -82749532 + L1Md_F LINE L1 487 2548 -3335 3 1094 7368 98 35 2 chr6 66767506 66768590 -82748447 + ORR1A2-int LTR MaLR 844 1963 0 3 1094 2065 69 0 68 chr6 66768590 66768886 -82748151 + ORR1A2 LTR MaLR 1 276 -51 3 1094 6952 69 3 1 chr6 66768896 66769877 -82747160 + L1Md_F2 LINE L1 2539 3521 -2362 3 1094 8369 16 0 0 chr6 66769885 66771180 -82745857 - L1Md_A LINE L1 0 6582 5288 3 1094 19379 25 2 1 chr6 66771192 66774300 -82742737 - L1Md_T LINE L1 0 6582 3475 3 1094 33920 13 0 8 chr6 66774278 66779201 -82737836 - L1Md_T LINE L1 -581 5302 422 3 1094 15463 61 4 0 chr6 66779202 66781273 -82735764 + L1Md_F2 LINE L1 3508 5586 -297 3 1094 7689 52 13 14 chr6 66781273 66782258 -82734779 + L1Md_F2 LINE L1 5587 6570 -12 3 1094 353 120 35 130 chr6 66782437 66782552 -82734485 + Lx LINE L1 6549 6652 -2 3 1094 9356 197 48 110 chr6 66782564 66782976 -82734061 + L1_Rod LINE L1 1763 2121 -3726 3 1094 420 94 106 0 chr6 66782976 66783061 -82733976 + Lx6 LINE L1 7367 7460 0 3 1094 9356 197 48 110 chr6 66783061 66783982 -82733055 + L1_Rod LINE L1 2122 2973 -2874 3 1094 2162 85 31 31 chr6 66783982 66784309 -82732728 + L1Md_F2 LINE L1 6256 6582 0 3 1094 9356 197 48 110 chr6 66784309 66784831 -82732206 + L1_Rod LINE L1 2974 3470 -2377 3 1094 1085 73 0 0 chr6 66784831 66784967 -82732070 + B1_Mus1 SINE Alu 1 136 -12 3 1094 917 114 13 0 chr6 66784967 66785116 -82731921 + (GAAA)n Simple_repeat Simple_repeat 3 153 0 3 1094 3468 28 0 129 chr6 66785116 66785612 -82731425 + RLTR10C LTR ERVK 1 432 -4 3 1094 858 81 0 0 chr6 66785614 66785738 -82731299 + (GGAA)n Simple_repeat Simple_repeat 2 125 0 3 1094 9356 197 48 110 chr6 66785738 66785762 -82731275 + L1_Rod LINE L1 3471 3493 -2354 3 1094 245 75 25 0 chr6 66785762 66785802 -82731235 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 1094 9356 197 48 110 chr6 66785802 66787052 -82729985 + L1_Rod LINE L1 3494 4664 -1183 3 1094 662 229 97 0 chr6 66787052 66787227 -82729810 - B2_Mm2 SINE B2 -3 192 1 3 1094 9356 197 48 110 chr6 66787227 66787682 -82729355 + L1_Rod LINE L1 4665 5130 -717 3 1094 2045 172 81 71 chr6 66787682 66787854 -82729183 - L1_Rod LINE L1 -3180 2667 2473 3 1094 288 0 0 0 chr6 66787854 66787886 -82729151 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1094 504 0 0 0 chr6 66787886 66787941 -82729096 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1094 2045 172 81 71 chr6 66787941 66788188 -82728849 - L1_Rod LINE L1 -3375 2472 2238 3 1094 1511 101 16 16 chr6 66788188 66788430 -82728607 - Lx LINE L1 0 6654 6413 3 1094 2045 172 81 71 chr6 66788430 66788589 -82728448 - L1_Rod LINE L1 -3610 2237 2082 3 1094 1266 105 5 25 chr6 66788591 66788625 -82728412 - B2_Mm2 SINE B2 -3 192 162 3 1094 342 0 0 0 chr6 66788625 66788663 -82728374 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 3 1094 1266 105 5 25 chr6 66788663 66788824 -82728213 - B2_Mm2 SINE B2 -34 161 1 3 1094 2876 179 21 5 chr6 66788825 66789438 -82727599 - L1_Rod LINE L1 -3782 2065 1443 3 1094 911 125 24 0 chr6 66789445 66789613 -82727424 + (TTC)n Simple_repeat Simple_repeat 1 172 0 3 1094 377 208 0 14 chr6 66789613 66789686 -82727351 + CT-rich Low_complexity Low_complexity 3 74 0 3 1094 951 165 133 66 chr6 66789687 66790062 -82726975 - L1_Rod LINE L1 -4413 1434 1028 3 1094 242 105 0 0 chr6 66790552 66790590 -82726447 - MT2A LTR ERVL 0 493 456 3 1094 650 228 25 194 chr6 66790572 66790599 -82726438 - MT2A LTR ERVL -302 231 206 3 1094 1203 79 0 0 chr6 66790599 66790763 -82726274 + (GA)n Simple_repeat Simple_repeat 1 164 0 3 1094 650 228 25 194 chr6 66790763 66791013 -82726024 - MT2A LTR ERVL -328 205 1 3 1094 228 359 10 42 chr6 66791315 66791411 -82725626 - L4 LINE RTE -798 1231 1139 3 1094 252 93 0 23 chr6 66794155 66794199 -82722838 + L1VL2 LINE L1 191 233 -6102 3 1094 1704 132 53 0 chr6 66794199 66794503 -82722534 + L1VL2 LINE L1 133 452 -5883 3 1094 8273 94 6 5 chr6 66794502 66795778 -82721259 + MusHAL1 LINE L1 803 2080 -632 3 1094 22 35 0 0 chr6 66796350 66796379 -82720658 + AT_rich Low_complexity Low_complexity 1 29 0 3 1094 388 0 39 0 chr6 66797152 66797204 -82719833 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 3 1094 183 247 60 36 chr6 66797576 66797660 -82719377 - L3 LINE CR1 -3595 894 809 3 1094 217 51 51 0 chr6 66799342 66799381 -82717656 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 1094 1284 254 56 3 chr6 66800049 66800388 -82716649 - ORR1D2 LTR MaLR -13 357 1 3 1094 1715 168 44 19 chr6 66800727 66801172 -82715865 - RMER17C LTR ERVK -519 439 16 3 1094 23 33 0 0 chr6 66801189 66801219 -82715818 + AT_rich Low_complexity Low_complexity 1 30 0 3 1094 2001 131 203 24 chr6 66801219 66801800 -82715237 - RMER17C-int LTR ERVK -21 3217 2533 3 1094 838 166 24 0 chr6 66801798 66801967 -82715070 - RMER17C-int LTR ERVK -896 2342 2170 3 1094 788 142 187 32 chr6 66801962 66802181 -82714856 - RMER17C-int LTR ERVK -1215 2023 1771 3 1094 356 143 57 133 chr6 66802215 66802320 -82714717 + MT2B LTR ERVL 168 264 -337 3 1094 684 203 0 16 chr6 66802229 66802354 -82714683 + B1_Mur3 SINE Alu 24 146 -3 3 1094 302 306 47 163 chr6 66802354 66802381 -82714656 + B4A SINE B4 115 243 -49 3 1094 440 77 15 0 chr6 66803591 66803656 -82713381 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 3 1094 272 368 32 40 chr6 66804834 66805180 -82711857 - MuLV-int LTR ERV1 -3861 3745 3403 3 1094 254 270 32 0 chr6 66805314 66805377 -82711660 - MuLV-int LTR ERV1 -4241 3315 3251 3 1094 4217 95 2 2 chr6 66805718 66806309 -82710728 + L1_Mus3 LINE L1 6048 6638 0 3 1094 262 349 8 8 chr6 66806361 66806488 -82710549 - MuLV-int LTR ERV1 -4775 2831 2705 3 1094 1804 166 29 88 chr6 66806946 66807322 -82709715 - ORR1C1 LTR MaLR 0 378 25 3 1094 180 0 0 0 chr6 66808255 66808275 -82708762 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1094 1051 102 106 18 chr6 66808697 66808867 -82708170 - B2_Mm2 SINE B2 -9 186 2 3 1094 7344 68 35 4 chr6 66811493 66811781 -82705256 - MusHAL1 LINE L1 -917 1795 1485 3 1094 387 0 0 0 chr6 66811781 66811824 -82705213 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1094 7344 68 35 4 chr6 66811824 66812633 -82704404 - MusHAL1 LINE L1 -1228 1484 665 3 1094 419 240 20 0 chr6 66813489 66813589 -82703448 + RMER1C Other Other 1214 1315 -27 3 1094 487 260 10 0 chr6 66814350 66814446 -82702591 - PB1D9 SINE Alu -5 115 19 3 1094 259 336 124 9 chr6 66814360 66814465 -82702572 - B4 SINE B4 -99 193 77 3 1094 1045 47 13 33 chr6 66814749 66814902 -82702135 - L1Md_T LINE L1 -1 6581 6432 3 1094 354 295 127 16 chr6 66815261 66815586 -82701451 - L1M2 LINE L1 -3160 3422 3081 3 1094 436 156 11 11 chr6 66815683 66815774 -82701263 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 1094 236 257 26 68 chr6 66815779 66815896 -82701141 - L1_Rod LINE L1 -3604 2243 2132 3 1094 797 165 30 15 chr6 66816223 66816358 -82700679 - B1_Mur2 SINE Alu -1 148 12 3 1094 1241 315 59 46 chr6 66816477 66817584 -82699453 - L1_Rod LINE L1 -2940 2907 1787 3 1094 322 318 24 8 chr6 66817593 66817720 -82699317 + Lx8 LINE L1 6200 6328 -1145 3 1094 1669 287 56 35 chr6 66817732 66818354 -82698683 + Lx8 LINE L1 6479 7113 -360 3 1094 2022 204 17 15 chr6 66818470 66818882 -82698155 + MTD LTR MaLR 7 419 0 3 1094 531 0 0 0 chr6 66818945 66819004 -82698033 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1094 252 0 0 0 chr6 66819004 66819031 -82698006 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1094 340 274 60 49 chr6 66819245 66819588 -82697449 - L1M2 LINE L1 -4315 2267 1849 3 1094 2129 194 40 8 chr6 66819591 66819992 -82697045 - MTC LTR MaLR -2 419 6 3 1094 33566 35 1 0 chr6 66820287 66825260 -82691777 - L1Md_T LINE L1 0 6585 1607 3 1094 7546 82 1 22 chr6 66825764 66827228 -82689809 - L1Md_T LINE L1 -4266 1620 78 3 1094 448 315 167 24 chr6 66828066 66828443 -82688594 + L2a LINE L2 2332 2762 -657 3 1094 762 255 0 55 chr6 66828649 66828848 -82688189 - B3A SINE B2 -10 188 1 3 1094 292 284 165 81 chr6 66828849 66829121 -82687916 + L2a LINE L2 3128 3422 -4 3 1094 228 242 32 0 chr6 66829229 66829291 -82687746 + ID4 SINE ID 3 66 -17 3 1094 995 216 114 21 chr6 66830976 66831265 -82685772 + L1_Rod LINE L1 5532 5847 0 3 1094 515 194 0 53 chr6 66831270 66831300 -82685737 - RLTR28 LTR ERVL 0 524 500 3 1094 3214 98 197 0 chr6 66831300 66831802 -82685235 - MT2B LTR ERVL 0 601 1 3 1094 515 194 0 53 chr6 66831802 66831885 -82685152 - RLTR28 LTR ERVL -25 499 417 3 1094 2115 217 43 6 chr6 66831885 66832399 -82684638 - L1_Mur3 LINE L1 -6899 813 281 3 1094 645 213 72 22 chr6 66832433 66832572 -82684465 + B1_Mur2 SINE Alu 3 148 -1 3 1094 355 228 157 10 chr6 66833024 66833126 -82683911 - PB1D9 SINE Alu -2 118 2 3 1094 1915 230 41 18 chr6 66833352 66833862 -82683175 + L1PB4 LINE L1 5471 6017 -139 3 1094 327 301 40 36 chr6 66833856 66834080 -82682957 + Lx7 LINE L1 7188 7412 -284 3 1094 1789 176 27 56 chr6 66834323 66834697 -82682340 - ORR1C1 LTR MaLR 0 378 16 3 1094 867 166 14 68 chr6 66834708 66834915 -82682122 - Lx3C LINE L1 -2 6974 6779 3 1094 610 226 88 0 chr6 66835013 66835150 -82681887 + B3 SINE B2 1 149 -67 3 1094 1109 229 20 0 chr6 66835444 66835689 -82681348 - Lx5 LINE L1 -2 7048 6799 3 1094 791 175 43 7 chr6 66836218 66836356 -82680681 - B1_Mur4 SINE Alu -7 143 1 3 1094 4989 211 49 20 chr6 66836474 66837542 -82679495 + Lx7 LINE L1 6232 7330 -366 3 1094 720 70 26 9 chr6 66837544 66837660 -82679377 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 3 1094 211 200 0 0 chr6 66837673 66837708 -82679329 + polypyrimidine Low_complexity Low_complexity 4 38 0 3 1094 404 223 158 61 chr6 66837734 66837782 -82679255 + Lx7 LINE L1 7482 7532 -164 3 1094 243 0 0 0 chr6 66837782 66837809 -82679228 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1094 404 223 158 61 chr6 66837809 66837956 -82679081 + Lx7 LINE L1 7533 7696 0 3 1094 721 249 69 10 chr6 66837978 66838181 -82678856 + B3 SINE B2 1 215 -1 3 1094 360 351 15 0 chr6 66838190 66838324 -82678713 + B1_Mur1 SINE Alu 1 136 -13 3 1094 501 314 44 25 chr6 66839248 66839299 -82677738 + RSINE1 SINE B4 3 57 -108 3 1094 8477 33 0 0 chr6 66839299 66840277 -82676760 + L1Md_T LINE L1 5605 6582 0 3 1094 501 314 44 25 chr6 66840277 66840385 -82676652 + RSINE1 SINE B4 58 165 0 3 1094 905 162 0 13 chr6 66840822 66840978 -82676059 + ORR1C1 LTR MaLR 225 378 0 3 1094 247 250 26 26 chr6 66840979 66841057 -82675980 + GA-rich Low_complexity Low_complexity 3 80 0 3 1094 302 248 216 37 chr6 66842399 66842533 -82674504 + RSINE1 SINE B4 2 159 -6 3 1094 352 273 115 15 chr6 66843413 66843543 -82673494 + MER45A DNA Tip100 33 175 -3 3 1094 321 383 47 32 chr6 66843547 66843890 -82673147 - LTR16C LTR ERVL -64 425 78 3 1094 22 35 0 0 chr6 66844003 66844032 -82673005 + AT_rich Low_complexity Low_complexity 1 29 0 4 1094 225 132 0 0 chr6 66844063 66844101 -82672936 + (TATG)n Simple_repeat Simple_repeat 1 38 0 4 1094 318 306 0 0 chr6 66844245 66844343 -82672694 + MIR SINE MIR 155 252 -10 4 1094 788 274 94 48 chr6 66844402 66844732 -82672305 - MER2 DNA MER2_type 0 345 1 4 1094 229 187 75 32 chr6 66845382 66845476 -82671561 - RMER1C Other Other -3 1339 1242 4 1094 877 108 13 7 chr6 66845486 66845635 -82671402 + (TTCC)n Simple_repeat Simple_repeat 3 152 0 4 1094 279 0 0 0 chr6 66845936 66845967 -82671070 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 4 1094 249 108 0 0 chr6 66846468 66846505 -82670532 + (CGG)n Simple_repeat Simple_repeat 2 38 0 4 1095 23 0 0 0 chr6 66847012 66847035 -82670002 + AT_rich Low_complexity Low_complexity 1 23 0 4 1095 572 291 14 7 chr6 66848870 66849012 -82668025 + B1F SINE Alu 6 148 -1 4 1095 219 114 0 0 chr6 66849037 66849072 -82667965 + (TATG)n Simple_repeat Simple_repeat 4 38 0 4 1095 217 303 44 11 chr6 66849830 66849920 -82667117 + MIR SINE MIR 160 252 -10 4 1095 186 71 0 0 chr6 66850555 66850583 -82666454 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1095 21 0 0 0 chr6 66852327 66852348 -82664689 + AT_rich Low_complexity Low_complexity 1 21 0 4 1095 639 268 0 21 chr6 66852356 66852501 -82664536 + B1_Mur2 SINE Alu 1 142 -7 4 1095 228 169 0 71 chr6 66852520 66852590 -82664447 + A-rich Low_complexity Low_complexity 4 68 0 4 1095 415 304 64 14 chr6 66855664 66855804 -82661233 + B1F SINE Alu 3 149 0 4 1095 345 141 0 0 chr6 66855867 66855938 -82661099 + (TC)n Simple_repeat Simple_repeat 1 71 0 4 1095 255 315 34 0 chr6 66856307 66856396 -82660641 - MER104 DNA Tc2 -2 179 88 4 1095 735 281 168 26 chr6 66856418 66856835 -82660202 - MLT1E2 LTR MaLR -4 623 148 4 1095 250 214 54 0 chr6 66857853 66857909 -82659128 + ID4_ SINE ID 1 59 -24 4 1095 221 318 45 11 chr6 66857909 66857942 -82659095 + ID_B1 SINE B4 1 92 -132 4 1095 1920 156 71 16 chr6 66857947 66858311 -82658726 + ORR1C2 LTR MaLR 1 384 0 4 1095 299 317 34 47 chr6 66859168 66859317 -82657720 + MER5C1 DNA MER1_type 64 210 -53 4 1095 454 48 0 0 chr6 66859867 66859929 -82657108 + B1_Mus2 SINE Alu 85 146 -1 4 1095 32 0 0 0 chr6 66859930 66859962 -82657075 + AT_rich Low_complexity Low_complexity 1 32 0 4 1095 308 346 0 63 chr6 66860239 66860381 -82656656 - MIRm SINE MIR -108 168 36 4 1095 313 156 26 0 chr6 66861828 66861905 -82655132 + T-rich Low_complexity Low_complexity 3 81 0 4 1095 404 307 24 21 chr6 66862206 66862361 -82654676 - B1F SINE Alu 0 149 5 4 1095 291 286 3 6 chr6 66863184 66863288 -82653749 + MIR SINE MIR 57 166 -110 4 1095 532 220 0 35 chr6 66863560 66863673 -82653364 - B1F SINE Alu -31 118 10 4 1095 838 178 88 16 chr6 66863694 66863888 -82653149 - ORR1C2 LTR MaLR 0 384 177 4 1095 818 200 0 6 chr6 66864024 66864180 -82652857 - ORR1C2 LTR MaLR -219 155 1 4 1095 1299 150 322 18 chr6 66865595 66865874 -82651163 - MTD LTR MaLR -9 410 47 4 1095 699 284 34 19 chr6 66866391 66866657 -82650380 - L1MC1 LINE L1 -203 6130 5861 4 1095 845 266 107 0 chr6 66866676 66866939 -82650098 - L1MC1 LINE L1 -613 5731 5441 4 1095 549 243 35 66 chr6 66867057 66867255 -82649782 - L1MC1 LINE L1 -882 5264 5073 4 1095 240 35 0 0 chr6 66867269 66867298 -82649739 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1095 679 280 82 45 chr6 66867325 66867568 -82649469 - MTE2b LTR MaLR -104 275 24 4 1095 1260 243 211 10 chr6 66867717 66868197 -82648840 - L1MC1 LINE L1 -1235 4911 4343 4 1095 369 0 0 0 chr6 66868197 66868238 -82648799 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 4 1095 1260 243 211 10 chr6 66868238 66868364 -82648673 - L1MC1 LINE L1 -1804 4342 4183 4 1095 207 69 0 0 chr6 66868373 66868402 -82648635 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1095 264 59 0 0 chr6 66869010 66869044 -82647993 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1095 789 41 0 0 chr6 66869044 66869140 -82647897 + (GA)n Simple_repeat Simple_repeat 2 98 0 4 1095 362 287 51 7 chr6 66869338 66869475 -82647562 - B1F SINE Alu 0 149 7 4 1095 257 226 106 12 chr6 66870561 66870632 -82646405 + B3A SINE B2 4 82 -116 4 1095 348 24 0 0 chr6 66870632 66870673 -82646364 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1095 257 226 106 12 chr6 66870673 66870686 -82646351 + B3A SINE B2 83 95 -103 4 1095 388 263 210 0 chr6 66871067 66871291 -82645746 - RMER5 LTR ERV1 -214 320 50 4 1095 291 283 26 62 chr6 66871606 66871719 -82645318 - MER106B DNA MER1_type -914 145 37 4 1095 754 212 186 8 chr6 66872165 66872229 -82644808 - B4A SINE B4 0 292 226 4 1095 1985 153 147 0 chr6 66872229 66872596 -82644441 - MTC LTR MaLR 0 421 1 4 1095 754 212 186 8 chr6 66872596 66872778 -82644259 - B4A SINE B4 -67 225 2 4 1095 491 112 0 12 chr6 66873312 66873393 -82643644 + (TCC)n Simple_repeat Simple_repeat 2 81 0 4 1095 375 23 0 0 chr6 66873389 66873433 -82643604 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1095 187 350 0 0 chr6 66873520 66873600 -82643437 - MIRb SINE MIR -37 231 152 4 1095 399 272 72 33 chr6 66874300 66874452 -82642585 - RSINE1 SINE B4 -6 159 2 4 1095 695 302 130 23 chr6 66874582 66875012 -82642025 + Charlie1a DNA MER1_type 1 476 -979 4 1095 309 273 64 57 chr6 66875238 66875378 -82641659 - Charlie1a DNA MER1_type -4 1451 1311 4 1095 428 246 27 0 chr6 66875406 66875516 -82641521 + Lx9 LINE L1 7299 7411 -233 4 1095 1216 317 172 29 chr6 66875517 66876180 -82640857 + MER21B LTR ERV1 76 833 -30 4 1095 1186 105 72 0 chr6 66877004 66877185 -82639852 + B2_Mm2 SINE B2 1 194 -1 4 1095 237 108 0 0 chr6 66877185 66877222 -82639815 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 1095 291 71 0 0 chr6 66879407 66879449 -82637588 + (A)n Simple_repeat Simple_repeat 1 42 0 4 1095 324 288 42 0 chr6 66879449 66879545 -82637492 - B3A SINE B2 -39 177 80 4 1095 598 278 151 42 chr6 66879628 66879985 -82637052 - Lx8 LINE L1 -3 7470 7075 4 1095 280 255 10 10 chr6 66880434 66880537 -82636500 + A-rich Low_complexity Low_complexity 2 104 0 4 1095 750 255 87 153 chr6 66880956 66881452 -82635585 - RLTR12B LTR ERVK -24 504 42 4 1095 495 248 171 0 chr6 66881489 66881618 -82635419 + RSINE1 SINE B4 2 152 -13 4 1095 819 199 192 6 chr6 66881745 66881927 -82635110 + B3 SINE B2 1 216 0 4 1095 241 262 47 12 chr6 66881977 66882062 -82634975 + PB1D10 SINE Alu 30 117 0 4 1095 188 143 0 23 chr6 66882833 66882876 -82634161 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4 1095 612 245 233 13 chr6 66882965 66883201 -82633836 + B4A SINE B4 1 288 -4 4 1095 486 88 0 0 chr6 66883232 66883300 -82633737 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1095 257 292 93 9 chr6 66883328 66883435 -82633602 - L2a LINE L2 -20 3406 3291 4 1095 375 291 0 35 chr6 66883977 66884091 -82632946 + PB1D10 SINE Alu 2 111 -6 4 1095 195 100 0 0 chr6 66885747 66885777 -82631260 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1095 224 167 21 0 chr6 66886258 66886306 -82630731 + A-rich Low_complexity Low_complexity 2 50 0 4 1095 219 260 135 14 chr6 66886307 66886381 -82630656 + PB1D10 SINE Alu 1 83 -34 4 1095 234 190 0 17 chr6 66886639 66886698 -82630339 + (TGGG)n Simple_repeat Simple_repeat 4 61 0 4 1095 299 271 87 106 chr6 66887064 66887086 -82629951 + B4 SINE B4 66 220 -69 4 1095 586 252 22 7 chr6 66887086 66887222 -82629815 + B1_Mur1 SINE Alu 6 143 -6 4 1095 206 62 31 0 chr6 66887297 66887329 -82629708 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 4 1095 553 303 11 48 chr6 66887518 66887705 -82629332 + B3A SINE B2 4 183 -15 4 1095 602 296 20 25 chr6 66887794 66887995 -82629042 + Lx8 LINE L1 7157 7356 -117 4 1095 263 232 29 0 chr6 66888016 66888085 -82628952 + RMER1C Other Other 1260 1330 -12 4 1095 1029 196 70 0 chr6 66888401 66888600 -82628437 - B3 SINE B2 -3 213 1 4 1095 239 253 21 75 chr6 66888640 66888734 -82628303 - MIRb SINE MIR -80 188 100 4 1095 551 272 65 7 chr6 66888890 66889080 -82627957 - B3A SINE B2 -4 212 2 4 1095 359 328 40 8 chr6 66889135 66889261 -82627776 + RSINE1 SINE B4 4 133 -32 4 1095 682 234 71 0 chr6 66889361 66889502 -82627535 + B3 SINE B2 1 151 -65 4 1095 208 242 15 75 chr6 66889891 66889958 -82627079 + L2 LINE L2 72 134 -3285 4 1095 851 304 32 0 chr6 66890051 66890334 -82626703 + B4 SINE B4 1 292 0 4 1095 291 285 98 13 chr6 66890883 66891036 -82626001 + MIR SINE MIR 29 194 -68 4 1095 598 295 98 0 chr6 66892030 66892213 -82624824 + B4A SINE B4 4 204 -88 4 1095 949 158 11 22 chr6 66892213 66892394 -82624643 + Lx2 LINE L1 6792 6970 -27 4 1095 409 47 0 30 chr6 66892394 66892460 -82624577 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 4 1095 251 257 14 28 chr6 66892611 66892683 -82624354 + B4A SINE B4 214 284 -8 4 1095 234 167 0 0 chr6 66894035 66894095 -82622942 + T-rich Low_complexity Low_complexity 1 60 0 4 1095 287 194 28 131 chr6 66894403 66894510 -82622527 - B3 SINE B2 -120 96 1 4 1095 238 297 114 23 chr6 66894688 66894819 -82622218 - MLT1H LTR MaLR -7 542 400 4 1095 669 291 28 28 chr6 66895071 66895361 -82621676 - B4 SINE B4 -2 290 1 4 1095 226 293 103 8 chr6 66895879 66895996 -82621041 + MIRc SINE MIR 111 238 -30 4 1095 305 219 60 47 chr6 66896237 66896342 -82620695 - PB1D10 SINE Alu -5 115 1 4 1095 432 200 0 0 chr6 66896391 66896486 -82620551 + (TATG)n Simple_repeat Simple_repeat 4 98 0 4 1095 1105 136 243 4 chr6 66898054 66898297 -82618740 - ORR1B2 LTR MaLR 0 367 67 4 1095 313 248 88 10 chr6 66898312 66898414 -82618623 + MIRb SINE MIR 89 198 -70 4 1095 300 175 0 0 chr6 66898429 66898492 -82618545 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1095 234 0 0 0 chr6 66899379 66899405 -82617632 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 5 1095 2454 79 29 12 chr6 66900336 66900682 -82616355 + L1Md_F2 LINE L1 6231 6582 0 5 1095 242 304 0 0 chr6 66901461 66901530 -82615507 - PB1D10 SINE Alu -43 74 6 5 1095 1193 208 105 6 chr6 66901718 66902052 -82614985 - ORR1D1 LTR MaLR 0 374 8 5 1095 535 289 26 0 chr6 66902438 66902594 -82614443 + RSINE1 SINE B4 3 162 -3 5 1095 295 291 170 13 chr6 66903199 66903352 -82613685 - B3 SINE B2 -17 199 23 5 1095 253 261 15 0 chr6 66904682 66904747 -82612290 - PB1D7 SINE Alu 0 120 55 5 1095 246 301 14 0 chr6 66904794 66904867 -82612170 + Arthur1B DNA Tip100 1146 1219 -6 5 1095 3042 73 13 2 chr6 66905627 66906023 -82611014 - MTB LTR MaLR 0 400 1 5 1095 656 253 45 0 chr6 66906117 66906271 -82610766 + B3A SINE B2 1 161 -37 5 1095 656 321 28 35 chr6 66907361 66907435 -82609602 - MER2 DNA MER2_type -59 286 208 5 1095 410 292 19 0 chr6 66907435 66907541 -82609496 - PB1D10 SINE Alu -8 109 2 5 1095 656 321 28 35 chr6 66907541 66907750 -82609287 - MER2 DNA MER2_type -138 207 6 5 1095 336 194 0 106 chr6 66908105 66908126 -82608911 + MT2B LTR ERVL 148 157 -444 5 1095 631 142 9 0 chr6 66908126 66908232 -82608805 + B1_Mur2 SINE Alu 3 109 -40 5 1095 1244 235 30 93 chr6 66908708 66908912 -82608125 + ORR1D1 LTR MaLR 1 183 -191 5 1095 510 61 0 0 chr6 66908912 66908978 -82608059 + (TC)n Simple_repeat Simple_repeat 2 67 0 5 1095 1244 235 30 93 chr6 66908978 66909172 -82607865 + ORR1D1 LTR MaLR 184 374 0 5 1095 1127 45 0 0 chr6 66909181 66909314 -82607723 + B1_Mm SINE Alu 1 133 -14 5 1095 504 0 0 0 chr6 66909314 66909370 -82607667 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1095 376 279 94 6 chr6 66909392 66909551 -82607486 + L1MC4 LINE L1 7674 7846 -196 5 1095 250 312 39 0 chr6 66909900 66909977 -82607060 + ID4 SINE ID 2 81 -2 5 1095 288 0 0 0 chr6 66909990 66910022 -82607015 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1095 336 255 191 0 chr6 66910137 66910231 -82606806 - ID_B1 SINE B4 -10 214 103 5 1095 2796 165 16 122 chr6 66910743 66911418 -82605619 - RMER19C LTR ERVK -6 605 2 5 1095 660 247 16 27 chr6 66912293 66912480 -82604557 - B4 SINE B4 -93 199 15 5 1095 243 0 0 0 chr6 66913274 66913301 -82603736 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1095 370 312 13 19 chr6 66913361 66913518 -82603519 - MIR SINE MIR -7 255 100 5 1095 239 250 40 0 chr6 66913568 66913644 -82603393 - MIR SINE MIR -77 185 107 5 1095 1199 63 0 0 chr6 66913721 66913880 -82603157 + B2_Mm1a SINE B2 2 160 -33 5 1095 330 87 0 0 chr6 66913880 66913926 -82603111 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 5 1095 348 24 0 0 chr6 66916018 66916059 -82600978 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1095 645 278 12 24 chr6 66916064 66916230 -82600807 - B3A SINE B2 -33 165 2 5 1095 188 256 23 0 chr6 66917190 66917233 -82599804 - L2c LINE L2 -222 3165 3122 5 1095 252 323 38 30 chr6 66918974 66919105 -82597932 - B4A SINE B4 -120 172 41 5 1095 462 79 0 0 chr6 66920039 66920102 -82596935 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 5 1095 450 235 155 12 chr6 66920402 66920570 -82596467 + B3A SINE B2 1 192 -6 5 1095 538 290 112 23 chr6 66920987 66921245 -82595792 - MTE2b LTR MaLR -93 286 6 5 1095 187 191 128 0 chr6 66921398 66921445 -82595592 - MIR SINE MIR -119 143 91 5 1095 410 255 98 0 chr6 66924136 66924238 -82592799 + RSINE1 SINE B4 46 157 -8 5 1095 863 266 84 60 chr6 66924767 66925170 -82591867 - L1MA4 LINE L1 -270 6021 5609 5 1095 231 36 0 0 chr6 66925616 66925644 -82591393 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1095 261 0 0 0 chr6 66925644 66925672 -82591365 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1095 261 230 156 33 chr6 66925918 66926008 -82591029 + PB1D9 SINE Alu 1 101 -19 5 1095 333 0 0 0 chr6 66926580 66926617 -82590420 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1095 243 0 0 0 chr6 66926617 66926643 -82590394 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1095 32 0 0 0 chr6 66927312 66927344 -82589693 + AT_rich Low_complexity Low_complexity 1 32 0 5 1095 555 271 0 8 chr6 66927870 66928000 -82589037 + ID_B1 SINE B4 96 224 0 5 1095 667 235 98 39 chr6 66928122 66928326 -82588711 + B3 SINE B2 1 216 0 5 1095 1062 175 101 5 chr6 66928371 66928598 -82588439 + RMER13A LTR ERVK 122 350 -510 5 1095 328 330 61 181 chr6 66928578 66928988 -82588049 + RMER13A LTR ERVK 488 848 -12 5 1095 410 374 65 10 chr6 66929282 66929482 -82587555 - MER58A DNA MER1_type -2 222 12 5 1095 339 25 0 0 chr6 66929664 66929704 -82587333 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1095 214 286 14 14 chr6 66929949 66930020 -82587017 - BC1_Mm scRNA scRNA -81 71 1 5 1095 202 132 26 0 chr6 66931146 66931184 -82585853 + T-rich Low_complexity Low_complexity 3 41 0 5 1095 738 131 144 15 chr6 66931210 66931342 -82585695 - B1_Mur4 SINE Alu -1 149 1 5 1095 402 21 0 0 chr6 66932747 66932794 -82584243 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1095 327 284 228 0 chr6 66932796 66932923 -82584114 - B3A SINE B2 -41 157 2 5 1095 226 154 0 37 chr6 66936354 66936369 -82580668 + A-rich Low_complexity Low_complexity 3 16 0 5 1095 1188 48 0 0 chr6 66936369 66936516 -82580521 + B1_Mus2 SINE Alu 1 147 0 5 1095 226 154 0 37 chr6 66936516 66936554 -82580483 + A-rich Low_complexity Low_complexity 17 53 0 5 1095 248 292 24 81 chr6 66936897 66937020 -82580017 - L1ME3A LINE L1 -200 5973 5858 5 1095 993 176 67 67 chr6 66937952 66938177 -82578860 + URR1B DNA MER1_type 1 225 0 5 1095 203 298 58 44 chr6 66938203 66938340 -82578697 - MER5B DNA MER1_type -20 158 20 5 1095 2472 121 34 10 chr6 66939531 66939916 -82577121 - ORR1B1 LTR MaLR 0 394 1 5 1095 749 211 29 129 chr6 66941607 66941847 -82575190 + B3A SINE B2 1 216 0 5 1095 236 327 93 19 chr6 66941890 66942052 -82574985 + B4 SINE B4 3 176 -116 5 1095 547 228 82 82 chr6 66944112 66944294 -82572743 - B3A SINE B2 -16 182 1 5 1095 458 245 53 53 chr6 66944315 66944466 -82572571 - MER5A DNA MER1_type -38 151 1 5 1095 583 323 64 60 chr6 66944659 66944838 -82572199 - B4A SINE B4 -57 235 54 5 1095 1292 225 91 26 chr6 66944838 66945189 -82571848 - ORR1D1 LTR MaLR 0 374 1 5 1095 583 323 64 60 chr6 66945189 66945243 -82571794 - B4A SINE B4 -239 53 1 5 1095 2873 36 0 9 chr6 66945268 66945603 -82571434 - IAPEY3_LTR LTR ERVK 0 332 1 5 1095 192 366 36 12 chr6 66945665 66945748 -82571289 + MIRb SINE MIR 150 234 -34 5 1095 189 0 0 0 chr6 66946144 66946165 -82570872 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 5 1095 206 259 225 81 chr6 66946837 66946997 -82570040 + MIRb SINE MIR 84 266 -2 5 1095 246 32 0 0 chr6 66949219 66949250 -82567787 + (CTTA)n Simple_repeat Simple_repeat 1 31 0 5 1095 810 114 44 36 chr6 66949438 66949575 -82567462 + B1_Mur4 SINE Alu 11 148 -2 5 1095 230 232 10 196 chr6 66950422 66950524 -82566513 - MLT1B LTR MaLR -32 435 353 5 1095 41961 15 0 4 chr6 66950569 66959636 -82557401 - L1Md_A LINE L1 0 6582 1 5 1095 359 227 11 11 chr6 66959636 66959725 -82557312 - MLT1B LTR MaLR -209 181 93 5 1095 232 395 0 0 chr6 66959970 66960046 -82556991 - ID4_ SINE ID -2 81 6 5 1095 257 282 81 23 chr6 66960055 66960142 -82556895 - MIRc SINE MIR -64 204 113 5 1095 545 165 106 0 chr6 66960371 66960477 -82556560 - PB1D9 SINE Alu -1 119 1 5 1095 234 0 0 0 chr6 66961412 66961438 -82555599 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1095 1097 95 0 0 chr6 66961440 66961587 -82555450 - B1_Mus1 SINE Alu 0 148 2 5 1095 219 302 75 0 chr6 66961729 66961835 -82555202 + MIRb SINE MIR 117 230 -38 5 1095 1117 59 0 0 chr6 66962343 66962479 -82554558 + B1_Mus1 SINE Alu 3 138 -10 5 1095 387 304 29 0 chr6 66962989 66963091 -82553946 + PB1 SINE Alu 2 106 -21 5 1095 284 0 0 27 chr6 66963408 66963445 -82553592 + (CACCC)n Simple_repeat Simple_repeat 3 38 0 5 1095 197 277 185 0 chr6 66964166 66964231 -82552806 + MER5A DNA MER1_type 39 115 -74 5 1095 195 42 0 0 chr6 66966855 66966879 -82550158 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1095 367 248 44 81 chr6 66966888 66967024 -82550013 - RSINE1 SINE B4 -29 136 6 5 1095 698 252 0 0 chr6 66970363 66970498 -82546539 + RSINE1 SINE B4 2 136 -29 5 1095 233 311 127 57 chr6 66970498 66970520 -82546517 + B2_Mm1a SINE B2 1 168 -25 5 1095 194 321 3 0 chr6 66970781 66970861 -82546176 + MIRc SINE MIR 81 162 -46 5 1095 196 294 137 32 chr6 66971359 66971454 -82545583 - L2b LINE L2 -5 3370 3266 5 1095 387 279 179 5 chr6 66973351 66973535 -82543502 + B3 SINE B2 1 216 0 5 1095 537 220 154 21 chr6 66974394 66974558 -82542479 + B2_Mm2 SINE B2 3 168 -25 5 1095 208 203 70 0 chr6 66974757 66974816 -82542221 - MIRc SINE MIR -119 149 81 5 1095 591 288 60 5 chr6 66974825 66975010 -82542027 + B3 SINE B2 9 203 -13 5 1095 448 228 58 19 chr6 66975031 66975134 -82541903 + ID_B1 SINE B4 105 211 -13 5 1095 1485 162 60 10 chr6 66975134 66975433 -82541604 + ORR1D1 LTR MaLR 61 374 0 5 1095 509 170 110 0 chr6 66975484 66975584 -82541453 + PB1D9 SINE Alu 1 111 -9 5 1095 471 18 0 0 chr6 66975591 66975647 -82541390 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1095 306 321 90 15 chr6 66975830 66975853 -82541184 + B1F SINE Alu 7 149 0 6 1095 430 250 55 18 chr6 66975853 66975963 -82541074 + ID_B1 SINE B4 110 223 -1 6 1095 271 341 40 0 chr6 66976010 66976136 -82540901 - MIR SINE MIR -37 225 95 6 1095 638 286 69 30 chr6 66976200 66976431 -82540606 - Tigger7 DNA MER2_type -6 2485 2246 6 1095 1850 180 60 48 chr6 66976625 66977039 -82539998 - MTD LTR MaLR 0 419 1 6 1095 770 158 29 22 chr6 66977039 66977175 -82539862 + U1 snRNA snRNA 29 165 0 6 1095 447 19 0 0 chr6 66977720 66977772 -82539265 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1096 540 0 0 0 chr6 66978672 66978732 -82538305 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1096 453 116 0 0 chr6 66979207 66979276 -82537761 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1096 510 277 18 8 chr6 66979286 66979407 -82537630 + ID_B1 SINE B4 81 213 -79 6 1096 183 80 0 0 chr6 66979407 66979432 -82537605 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 6 1096 190 70 0 85 chr6 66979910 66979957 -82537080 + C-rich Low_complexity Low_complexity 2 44 0 6 1096 236 300 178 10 chr6 66980942 66981043 -82535994 + MIR SINE MIR 64 181 -81 6 1096 225 175 0 0 chr6 66981288 66981328 -82535709 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1096 230 244 189 22 chr6 66981683 66981792 -82535245 + L2c LINE L2 3209 3367 -20 6 1096 313 151 23 161 chr6 66982280 66982367 -82534670 - B1F SINE Alu 0 117 43 6 1096 1101 118 3 0 chr6 66982494 66982881 -82534156 + (TG)n Simple_repeat Simple_repeat 1 388 0 6 1096 513 244 117 8 chr6 66982885 66983013 -82534024 - RSINE1 SINE B4 -9 156 15 6 1096 357 82 0 0 chr6 66983191 66983240 -82533797 + (T)n Simple_repeat Simple_repeat 1 49 0 6 1096 1292 14 0 0 chr6 66983240 66983386 -82533651 - B1_Mus2 SINE Alu 0 147 2 6 1096 529 181 0 23 chr6 66984137 66984267 -82532770 + GA-rich Low_complexity Low_complexity 4 130 0 6 1096 205 331 96 22 chr6 66984788 66984924 -82532113 + L2c LINE L2 3109 3254 -133 6 1096 1194 63 0 0 chr6 66988697 66988840 -82528197 - B1_Mus2 SINE Alu -3 144 2 6 1096 876 172 54 18 chr6 66989060 66989226 -82527811 + B2_Mm2 SINE B2 1 172 -23 6 1096 531 45 0 0 chr6 66989228 66989294 -82527743 + (GGGGA)n Simple_repeat Simple_repeat 1 66 0 6 1096 305 238 0 70 chr6 66989315 66989401 -82527636 + ID4 SINE ID 1 80 -3 6 1096 851 228 180 31 chr6 66989449 66989743 -82527294 + MTE2b LTR MaLR 5 342 -37 6 1096 1194 223 161 133 chr6 66990159 66990744 -82526293 - MT2B LTR ERVL 0 601 1 6 1096 2197 198 27 5 chr6 66991230 66991641 -82525396 - MTC LTR MaLR 0 421 2 6 1096 398 243 8 3 chr6 66991643 66991733 -82525304 - PB1D10 SINE Alu -23 97 6 6 1096 234 0 0 0 chr6 66992177 66992203 -82524834 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1096 217 286 0 0 chr6 66992347 66992396 -82524641 + C-rich Low_complexity Low_complexity 4 52 0 6 1096 279 307 50 83 chr6 66992540 66992721 -82524316 + MTEb LTR MaLR 201 375 -4 6 1096 549 290 42 69 chr6 66992789 66992978 -82524059 + MLT1E1A LTR MaLR 63 246 -434 6 1096 404 271 327 28 chr6 66993113 66993327 -82523710 + MLT1E1A LTR MaLR 239 516 -111 6 1096 1034 371 55 41 chr6 66993383 66993700 -82523337 - Lx8 LINE L1 -12 7461 7129 6 1096 1287 90 34 0 chr6 66993700 66993878 -82523159 - B2_Mm2 SINE B2 -10 185 2 6 1096 1034 371 55 41 chr6 66993878 66994343 -82522694 - Lx8 LINE L1 -345 7128 6668 6 1096 238 298 0 0 chr6 66994371 66994428 -82522609 + MLT1E1A LTR MaLR 546 602 -52 6 1096 747 229 30 30 chr6 66994442 66994640 -82522397 + B3A SINE B2 1 198 0 6 1096 233 143 56 84 chr6 66994691 66994798 -82522239 + (TATATG)n Simple_repeat Simple_repeat 3 106 0 6 1096 234 62 0 0 chr6 66994802 66994834 -82522203 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1096 477 279 62 47 chr6 66994836 66994964 -82522073 - RSINE1 SINE B4 -8 157 28 6 1096 339 244 12 49 chr6 66995089 66995171 -82521866 + B1F2 SINE Alu 1 79 -70 6 1096 226 339 94 17 chr6 66995171 66995198 -82521839 + B4 SINE B4 105 205 -87 6 1096 410 287 305 9 chr6 66995527 66995865 -82521172 + L2 LINE L2 2232 2669 -750 6 1096 1020 210 0 42 chr6 66996093 66996307 -82520730 - URR1A DNA MER1_type 0 226 22 6 1096 215 289 0 0 chr6 66997539 66997600 -82519437 + MIR SINE MIR 94 161 -115 6 1096 201 94 0 0 chr6 66997695 66997727 -82519310 + (G)n Simple_repeat Simple_repeat 1 32 0 6 1096 184 159 58 0 chr6 66997929 66997998 -82519039 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 6 1096 211 262 106 15 chr6 67000000 67000066 -82516971 - B4 SINE B4 -216 76 5 1 1096 898 218 81 5 chr6 67000815 67001013 -82516024 + B3 SINE B2 1 213 -3 2 1096 8013 67 4 8 chr6 67001086 67002504 -82514533 + L1_Mus1 LINE L1 5158 6567 0 3 1096 422 329 18 48 chr6 67002845 67003011 -82514026 - RSINE1 SINE B4 0 165 5 4 1096 518 297 6 0 chr6 67003056 67003231 -82513806 + (CA)n Simple_repeat Simple_repeat 2 177 0 5 1096 490 174 30 0 chr6 67003283 67003450 -82513587 + (CA)n Simple_repeat Simple_repeat 2 173 0 5 1096 1003 53 0 8 chr6 67003460 67003594 -82513443 - B2_Mm2 SINE B2 -62 133 1 6 1096 2680 59 40 0 chr6 67004676 67005048 -82511989 - MusHAL1 LINE L1 -459 2253 1867 7 1096 196 318 15 15 chr6 67005352 67005419 -82511618 - L2b LINE L2 -22 3353 3287 8 1096 183 350 136 5 chr6 67007109 67007293 -82509744 + L2c LINE L2 2748 2955 -464 9 1096 262 359 66 0 chr6 67007354 67007460 -82509577 + MER45B DNA Tip100 1 113 -927 1 1096 240 290 48 29 chr6 67007694 67007797 -82509240 + L2c LINE L2 3210 3314 -73 9 1096 237 310 189 74 chr6 67008068 67008434 -82508603 - L2c LINE L2 -11 3376 2969 1 1096 239 191 21 0 chr6 67008816 67008863 -82508174 - B3A SINE B2 -114 84 37 1 1096 1197 48 7 0 chr6 67009309 67009455 -82507582 - B1_Mus1 SINE Alu 0 148 2 1 1096 736 194 0 0 chr6 67010377 67010506 -82506531 + B1_Mur4 SINE Alu 1 129 -21 1 1096 1550 59 0 5 chr6 67010648 67010836 -82506201 - B2_Mm2 SINE B2 -6 189 3 1 1096 305 363 51 39 chr6 67011035 67011290 -82505747 + L1MEc LINE L1 236 493 -5907 1 1096 287 292 59 102 chr6 67011444 67011886 -82505151 + L1MEc LINE L1 667 1089 -5311 1 1096 489 34 0 0 chr6 67012041 67012100 -82504937 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1 1096 198 160 0 0 chr6 67012147 67012197 -82504840 + T-rich Low_complexity Low_complexity 1 50 0 1 1096 486 285 120 35 chr6 67012392 67012650 -82504387 + B4A SINE B4 2 281 -11 1 1096 396 0 0 0 chr6 67012873 67012917 -82504120 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1096 1192 62 0 0 chr6 67013102 67013247 -82503790 - B1_Mm SINE Alu -2 145 1 2 1096 606 320 25 77 chr6 67013635 67013960 -82503077 + L1ME1 LINE L1 5463 5770 -409 2 1096 424 259 133 0 chr6 67013978 67014121 -82502916 + L1ME1 LINE L1 5851 6012 -167 2 1096 2163 278 97 14 chr6 67014257 67014990 -82502047 + Lx8 LINE L1 6476 7269 -204 2 1096 23 33 0 0 chr6 67015134 67015164 -82501873 + AT_rich Low_complexity Low_complexity 1 30 0 2 1096 542 198 88 63 chr6 67015431 67015636 -82501401 - Lx7 LINE L1 0 7696 7487 2 1096 552 121 0 0 chr6 67015652 67015743 -82501294 + (CA)n Simple_repeat Simple_repeat 1 91 0 2 1096 8301 190 45 40 chr6 67015758 67016653 -82500384 - Lx7 LINE L1 -354 7342 6435 2 1096 339 25 0 0 chr6 67016653 67016693 -82500344 + (TTCG)n Simple_repeat Simple_repeat 2 41 0 2 1096 8301 190 45 40 chr6 67016693 67016736 -82500301 - Lx7 LINE L1 -1262 6434 6430 2 1096 1247 89 77 6 chr6 67016736 67016917 -82500120 - B2_Mm2 SINE B2 0 195 2 2 1096 8301 192 43 29 chr6 67016917 67018067 -82498970 - Lx7 LINE L1 -1267 6429 5239 2 1096 272 169 35 46 chr6 67018070 67018157 -82498880 + T-rich Low_complexity Low_complexity 4 89 0 2 1096 232 215 10 70 chr6 67018158 67018204 -82498833 - L1_Mur1 LINE L1 -590 5296 5254 3 1096 865 133 20 27 chr6 67018204 67018351 -82498686 - B1_Mus1 SINE Alu 0 148 3 3 1096 232 215 10 70 chr6 67018351 67018404 -82498633 - L1_Mur1 LINE L1 -633 5253 5203 3 1096 1831 196 3 30 chr6 67018451 67018814 -82498223 - Lx7 LINE L1 -667 5213 4861 2 1096 1084 169 25 57 chr6 67018840 67019085 -82497952 - Lx7 LINE L1 -3340 2540 2304 2 1096 513 280 12 43 chr6 67019085 67019249 -82497788 + RMER10A LTR ERVL 1 159 -283 3 1096 751 222 98 64 chr6 67019278 67019514 -82497523 - Lx5 LINE L1 -11 7039 6796 3 1096 228 91 0 0 chr6 67019527 67019560 -82497477 - Lx7 LINE L1 -3722 2158 2126 2 1096 216 195 0 0 chr6 67020933 67020974 -82496063 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 1096 718 219 13 33 chr6 67020979 67021130 -82495907 - B1_Mur2 SINE Alu 0 149 2 3 1096 331 252 100 10 chr6 67021273 67021373 -82495664 + PB1D10 SINE Alu 8 112 -5 3 1096 366 23 0 0 chr6 67021703 67021746 -82495291 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1096 806 286 37 15 chr6 67021749 67022019 -82495018 + B4A SINE B4 3 278 -14 3 1096 389 288 136 31 chr6 67022845 67023103 -82493934 + LTR16B1 LTR ERVL 36 320 -160 3 1096 229 262 0 16 chr6 67023712 67023774 -82493263 + G-rich Low_complexity Low_complexity 5 65 0 4 1096 261 0 0 0 chr6 67024423 67024452 -82492585 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1096 22 0 0 0 chr6 67024506 67024528 -82492509 + AT_rich Low_complexity Low_complexity 1 22 0 4 1096 258 274 80 26 chr6 67024629 67024759 -82492278 - L1MB3 LINE L1 -114 6060 5925 4 1096 378 57 0 0 chr6 67024862 67024915 -82492122 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1096 207 0 0 0 chr6 67024915 67024937 -82492100 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 1096 590 237 107 138 chr6 67024944 67025242 -82491795 - B4A SINE B4 -3 289 1 4 1096 278 281 103 7 chr6 67025278 67025414 -82491623 - L1MB3 LINE L1 -383 5785 5637 4 1096 744 283 34 10 chr6 67025742 67025949 -82491088 - ID_B1 SINE B4 -4 220 9 4 1096 273 197 0 0 chr6 67026721 67026782 -82490255 + GA-rich Low_complexity Low_complexity 1 61 0 4 1096 489 110 0 0 chr6 67026935 67027008 -82490029 + (TCC)n Simple_repeat Simple_repeat 2 74 0 4 1096 388 258 8 39 chr6 67028353 67028482 -82488555 + ID_B1 SINE B4 97 221 -3 5 1096 247 214 0 51 chr6 67028429 67028488 -82488549 + PB1D10 SINE Alu 62 117 0 5 1096 391 324 36 0 chr6 67029031 67029142 -82487895 + ID_B1 SINE B4 85 199 -25 5 1096 507 295 35 41 chr6 67029697 67029869 -82487168 + B3A SINE B2 45 215 -1 5 1096 400 204 19 75 chr6 67029880 67029986 -82487051 - B1_Mur1 SINE Alu -1 148 49 5 1096 277 236 0 0 chr6 67030311 67030383 -82486654 + Charlie5 DNA MER1_type 51 121 -2503 5 1096 428 286 116 30 chr6 67030401 67030668 -82486369 + Charlie5 DNA MER1_type 2268 2557 -67 5 1096 778 179 0 41 chr6 67030655 67030801 -82486236 - B1_Mur1 SINE Alu 0 149 10 5 1096 373 324 33 99 chr6 67030666 67030817 -82486220 - B4 SINE B4 -73 219 79 5 1096 273 226 23 23 chr6 67030807 67030893 -82486144 + Charlie5 DNA MER1_type 2539 2624 0 5 1096 350 285 25 83 chr6 67031978 67032135 -82484902 - RSINE1 SINE B4 -14 151 4 5 1096 748 266 200 31 chr6 67032471 67032980 -82484057 - L1MB3 LINE L1 -37 6146 5552 5 1096 542 171 89 9 chr6 67033348 67033460 -82483577 + MT2A LTR ERVL 1 121 -412 6 1096 347 218 108 10 chr6 67033552 67033654 -82483383 + Lx7 LINE L1 7565 7676 -20 6 1096 45 55 0 0 chr6 67033654 67033727 -82483310 + AT_rich Low_complexity Low_complexity 1 73 0 6 1096 1252 34 0 0 chr6 67033795 67033942 -82483095 + B1_Mm SINE Alu 1 147 0 6 1096 217 307 0 0 chr6 67033994 67034069 -82482968 + (TA)n Simple_repeat Simple_repeat 2 76 0 6 1096 607 219 8 8 chr6 67034348 67034468 -82482569 + PB1D9 SINE Alu 1 120 0 6 1096 286 247 23 34 chr6 67035074 67035162 -82481875 - PB1D10 SINE Alu 0 117 31 6 1096 1137 112 38 38 chr6 67035602 67035788 -82481249 + B2_Mm2 SINE B2 1 186 -9 6 1096 483 254 35 17 chr6 67035922 67036038 -82480999 - B3 SINE B2 -98 118 1 6 1096 205 130 0 100 chr6 67036087 67036147 -82480890 + T-rich Low_complexity Low_complexity 2 55 0 6 1096 275 264 10 99 chr6 67036148 67036187 -82480850 - ID_B1 SINE B4 -131 93 2 7 1096 292 226 0 0 chr6 67036187 67036249 -82480788 - ID4 SINE ID -20 63 2 7 1096 575 219 92 0 chr6 67037017 67037136 -82479901 + B3 SINE B2 1 130 -86 7 1096 542 304 0 0 chr6 67037348 67037473 -82479564 + RSINE1 SINE B4 2 126 -39 7 1096 465 19 0 0 chr6 67037474 67037528 -82479509 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1096 22 70 0 0 chr6 67037908 67037951 -82479086 + AT_rich Low_complexity Low_complexity 1 43 0 7 1096 297 0 0 0 chr6 67038284 67038317 -82478720 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1096 348 270 39 0 chr6 67039425 67039526 -82477511 + B1F SINE Alu 9 115 -5 7 1096 237 316 14 61 chr6 67039743 67039891 -82477146 + MIRb SINE MIR 99 239 -29 7 1096 221 301 21 21 chr6 67040610 67040705 -82476332 + CT-rich Low_complexity Low_complexity 5 99 0 7 1096 288 311 194 55 chr6 67041267 67041560 -82475477 - MLT1A1 LTR MaLR 0 365 32 8 1096 1034 206 4 93 chr6 67041752 67041988 -82475049 + B3 SINE B2 2 216 0 8 1096 462 301 135 0 chr6 67042012 67042175 -82474862 + B3 SINE B2 2 186 -30 8 1096 206 0 69 0 chr6 67042179 67042208 -82474829 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 8 1096 622 258 147 0 chr6 67043750 67043913 -82473124 - ORR1D2 LTR MaLR -182 188 2 8 1096 496 252 8 0 chr6 67043978 67044097 -82472940 + Lx7 LINE L1 5630 5749 -1947 8 1096 451 294 48 145 chr6 67044531 67044738 -82472299 + B3A SINE B2 9 195 0 8 1096 677 172 0 14 chr6 67045206 67045353 -82471684 + CT-rich Low_complexity Low_complexity 2 146 0 8 1096 414 0 0 0 chr6 67045768 67045814 -82471223 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1096 447 268 129 17 chr6 67045903 67046135 -82470902 + Charlie2b DNA MER1_type 1790 2047 -735 8 1096 591 53 0 0 chr6 67046137 67046212 -82470825 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 9 1096 1487 229 46 33 chr6 67046431 67046823 -82470214 - MTD LTR MaLR -22 397 1 9 1096 236 245 88 34 chr6 67046859 67047007 -82470030 + Charlie2b DNA MER1_type 2373 2528 -254 8 1096 387 60 0 0 chr6 67047307 67047357 -82469680 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 1096 546 16 0 0 chr6 67047357 67047420 -82469617 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 9 1096 273 284 22 11 chr6 67047508 67047597 -82469440 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 9 1096 302 241 43 35 chr6 67047638 67047754 -82469283 - B4 SINE B4 -175 117 1 9 1096 342 0 0 0 chr6 67047754 67047792 -82469245 + (TATG)n Simple_repeat Simple_repeat 1 38 0 9 1096 3511 150 5 16 chr6 67048892 67048935 -82468102 - L1_Mur2 LINE L1 -25 5852 5812 9 1096 3265 65 0 2 chr6 67048935 67049336 -82467701 + MTB LTR MaLR 1 400 0 9 1096 3511 150 5 16 chr6 67049336 67049868 -82467169 - L1_Mur2 LINE L1 -66 5811 5283 9 1096 700 230 42 25 chr6 67049876 67050046 -82466991 + Lx5 LINE L1 5833 6004 -1046 9 1096 5156 166 34 9 chr6 67050046 67050918 -82466119 + Lx5 LINE L1 6149 7042 -8 1 1096 700 230 42 25 chr6 67050918 67051032 -82466005 + Lx5 LINE L1 6005 6122 -928 9 1096 193 224 61 0 chr6 67051391 67051440 -82465597 + L2c LINE L2 3104 3155 -232 1 1096 2716 75 0 13 chr6 67053244 67053622 -82463415 - Lx2 LINE L1 -2 6995 6623 1 1096 1272 56 0 17 chr6 67053948 67054129 -82462908 + (GGGAGA)n Simple_repeat Simple_repeat 1 178 0 1 1096 902 236 72 15 chr6 67055562 67055824 -82461213 - MLT1C LTR MaLR -4 463 187 1 1096 259 235 17 113 chr6 67056073 67056188 -82460849 - PB1D10 SINE Alu -1 116 13 1 1096 926 88 0 14 chr6 67056371 67056510 -82460527 + (TTTC)n Simple_repeat Simple_repeat 3 139 0 1 1096 769 204 7 0 chr6 67057072 67057219 -82459818 - B1_Mur2 SINE Alu 0 149 2 1 1096 263 235 177 64 chr6 67057274 67057415 -82459622 - MamGypLTR1d LTR Gypsy -605 208 52 1 1096 246 271 52 84 chr6 67057754 67057916 -82459121 + MIR SINE MIR 65 232 -36 1 1096 422 298 132 62 chr6 67058703 67058771 -82458266 + MER63B DNA AcHobo 89 150 -286 1 1096 828 240 34 5 chr6 67058771 67058980 -82458057 + B3 SINE B2 2 216 0 1 1096 422 298 132 62 chr6 67058980 67059070 -82457967 + MER63B DNA AcHobo 151 247 -189 1 1096 1650 182 47 32 chr6 67059070 67059472 -82457565 - RMER17C LTR ERVK 0 410 3 1 1096 422 298 132 62 chr6 67059472 67059637 -82457400 + MER63B DNA AcHobo 248 436 0 1 1096 652 210 0 25 chr6 67060087 67060209 -82456828 + B1_Mur2 SINE Alu 31 149 0 1 1096 431 318 64 0 chr6 67060327 67060500 -82456537 + MER5A DNA MER1_type 6 189 0 1 1096 457 302 55 8 chr6 67060527 67060654 -82456383 + MER20 DNA MER1_type 2 134 -85 1 1096 347 314 129 11 chr6 67060904 67061091 -82455946 - MIRb SINE MIR -27 235 35 1 1096 511 286 30 34 chr6 67061174 67061505 -82455532 + MLT1B LTR MaLR 7 390 0 1 1096 469 235 59 29 chr6 67061894 67062030 -82455007 + B1_Mur2 SINE Alu 2 141 -8 1 1096 979 59 96 7 chr6 67062669 67062805 -82454232 - B1_Mus1 SINE Alu 0 148 1 1 1096 220 278 90 55 chr6 67062948 67063083 -82453954 + MIRc SINE MIR 10 152 -116 1 1096 553 214 8 38 chr6 67063392 67063523 -82453514 + ID_B1 SINE B4 80 206 -18 1 1096 376 250 50 59 chr6 67063418 67063537 -82453500 + B1_Mur3 SINE Alu 21 138 -11 1 1096 224 231 19 0 chr6 67063544 67063596 -82453441 + GA-rich Low_complexity Low_complexity 3 55 0 1 1096 281 280 18 83 chr6 67064422 67064435 -82452602 + B1F1 SINE Alu 11 41 -108 1 1096 315 188 0 86 chr6 67064435 67064505 -82452532 + ID_B1 SINE B4 107 170 -54 1 1096 281 280 18 83 chr6 67064505 67064531 -82452506 + B1F1 SINE Alu 42 112 -37 1 1096 286 268 14 0 chr6 67064545 67064616 -82452421 + ID4_ SINE ID 2 73 -10 1 1096 1017 275 106 5 chr6 67064648 67065024 -82452013 + L1MB3 LINE L1 5476 5889 -294 1 1096 288 203 58 0 chr6 67065205 67065274 -82451763 + L1MB3 LINE L1 6095 6167 -4 1 1096 213 313 78 39 chr6 67065791 67065894 -82451143 - MIRm SINE MIR -100 176 70 1 1096 716 152 26 0 chr6 67066208 67066359 -82450678 + GA-rich Low_complexity Low_complexity 2 156 0 1 1096 462 79 0 0 chr6 67066788 67066851 -82450186 + (CTTG)n Simple_repeat Simple_repeat 4 66 0 1 1096 846 240 7 8 chr6 67067425 67067633 -82449404 + B3A SINE B2 10 216 0 1 1096 646 204 13 6 chr6 67067639 67067797 -82449240 + GA-rich Low_complexity Low_complexity 3 161 0 1 1096 300 26 26 0 chr6 67067799 67067838 -82449199 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1096 595 152 35 35 chr6 67067839 67067955 -82449082 + B1_Mur3 SINE Alu 33 148 -1 1 1096 286 171 14 14 chr6 67068490 67068561 -82448476 + CT-rich Low_complexity Low_complexity 3 73 0 1 1096 709 248 7 0 chr6 67069913 67070066 -82446971 + MTEa LTR MaLR 226 379 0 1 1096 1046 218 23 36 chr6 67070661 67070880 -82446157 + B3 SINE B2 1 216 0 1 1096 1165 82 0 0 chr6 67070944 67071090 -82445947 + B1_Mus1 SINE Alu 3 148 0 1 1096 950 293 101 54 chr6 67071125 67072144 -82444893 + L1_Rod LINE L1 1254 2340 -3507 1 1096 473 0 18 0 chr6 67072144 67072201 -82444836 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1096 950 305 86 52 chr6 67072201 67072309 -82444728 + L1_Rod LINE L1 2341 2452 -3395 1 1096 2234 116 158 56 chr6 67072310 67072740 -82444297 + MT2C_Mm LTR ERVL 1 474 -1 1 1096 431 297 49 5 chr6 67072764 67072987 -82444050 + L1M2 LINE L1 2967 3199 -2944 1 1096 323 229 0 16 chr6 67073820 67073882 -82443155 + ID4_ SINE ID 12 72 -11 1 1096 351 0 0 0 chr6 67073911 67073950 -82443087 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 1 1096 32 26 0 0 chr6 67074878 67074917 -82442120 + AT_rich Low_complexity Low_complexity 1 39 0 1 1096 834 123 0 0 chr6 67075448 67075578 -82441459 + (GGAA)n Simple_repeat Simple_repeat 3 132 0 1 1096 306 0 0 0 chr6 67076315 67076349 -82440688 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1096 540 288 113 5 chr6 67076908 67077093 -82439944 + B3 SINE B2 3 207 -9 1 1096 22 35 0 0 chr6 67077181 67077210 -82439827 + AT_rich Low_complexity Low_complexity 1 29 0 1 1096 676 298 41 15 chr6 67077210 67077476 -82439561 + B4A SINE B4 2 274 -18 1 1096 456 282 73 0 chr6 67077570 67077694 -82439343 + ID_B1 SINE B4 78 210 -14 1 1096 256 254 68 0 chr6 67077726 67077785 -82439252 + B4A SINE B4 84 146 -146 1 1096 353 218 179 0 chr6 67077744 67077822 -82439215 + PB1D10 SINE Alu 21 112 -5 1 1096 227 329 110 32 chr6 67078142 67078296 -82438741 - MIRb SINE MIR -10 258 93 1 1096 326 324 71 1 chr6 67079788 67079957 -82437080 + MIR SINE MIR 23 204 -64 1 1096 213 317 112 28 chr6 67080167 67080310 -82436727 + L2a LINE L2 2988 3142 -284 1 1096 238 290 126 36 chr6 67080386 67080497 -82436540 + L2a LINE L2 3286 3406 -20 1 1096 1305 198 166 29 chr6 67081898 67082248 -82434789 - ORR1C2 LTR MaLR 0 379 1 1 1096 907 152 14 0 chr6 67082310 67082455 -82434582 + B1_Mus1 SINE Alu 2 148 0 1 1096 284 350 72 17 chr6 67083839 67084019 -82433018 - MIR SINE MIR -18 244 55 1 1096 315 238 81 31 chr6 67084066 67084206 -82432831 - MIRb SINE MIR -17 251 96 1 1096 358 270 0 0 chr6 67084206 67084306 -82432731 + L1M5 LINE L1 5585 5684 -440 1 1096 910 160 0 0 chr6 67085581 67085725 -82431312 + B1_Mur4 SINE Alu 7 150 0 1 1096 410 223 83 109 chr6 67085585 67085741 -82431296 + B4A SINE B4 95 246 -46 1 1096 229 185 15 15 chr6 67085743 67085778 -82431259 + polypurine Low_complexity Low_complexity 3 37 0 1 1096 585 42 0 0 chr6 67085778 67085850 -82431187 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 1 1096 229 185 15 15 chr6 67085850 67085880 -82431157 + polypurine Low_complexity Low_complexity 38 68 0 1 1096 633 221 59 0 chr6 67085891 67086027 -82431010 + B1_Mur1 SINE Alu 5 148 -1 1 1096 226 361 106 32 chr6 67086139 67086328 -82430709 + MIRc SINE MIR 3 205 -63 1 1096 690 155 98 7 chr6 67086811 67086954 -82430083 - RMER17C LTR ERVK -254 156 1 1 1096 278 317 100 0 chr6 67086955 67087075 -82429962 + MIRc SINE MIR 71 202 -66 1 1096 314 305 69 21 chr6 67090601 67090745 -82426292 + MIRb SINE MIR 2 152 -116 1 1096 229 257 83 28 chr6 67091640 67091712 -82425325 - L1MC3 LINE L1 -245 7540 7465 1 1096 216 171 0 0 chr6 67092194 67092235 -82424802 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1096 192 40 0 0 chr6 67092748 67092773 -82424264 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1 1096 234 136 0 0 chr6 67092788 67092832 -82424205 + (TGGG)n Simple_repeat Simple_repeat 3 46 0 1 1096 316 239 15 0 chr6 67092837 67092904 -82424133 - ID4 SINE ID -11 72 5 1 1096 1235 61 0 0 chr6 67093079 67093226 -82423811 + B1_Mm SINE Alu 1 147 0 1 1096 254 276 26 8 chr6 67094063 67094180 -82422857 + (TTTG)n Simple_repeat Simple_repeat 2 120 0 1 1096 232 156 44 0 chr6 67094760 67094805 -82422232 + (TATATG)n Simple_repeat Simple_repeat 1 47 0 1 1096 29 47 0 0 chr6 67094814 67094857 -82422180 + AT_rich Low_complexity Low_complexity 1 43 0 1 1096 410 268 99 94 chr6 67095400 67095602 -82421435 - B4A SINE B4 -6 286 84 1 1096 449 295 53 8 chr6 67095883 67095900 -82421137 + B4 SINE B4 66 88 -204 1 1096 581 231 16 33 chr6 67095900 67096021 -82421016 + B1_Mur1 SINE Alu 2 120 -29 1 1096 207 232 107 24 chr6 67096187 67096271 -82420766 - L2b LINE L2 -238 3137 3047 1 1096 653 45 23 0 chr6 67097161 67097249 -82419788 + (TTTC)n Simple_repeat Simple_repeat 2 91 0 1 1096 1194 68 0 0 chr6 67097333 67097479 -82419558 - B1_Mus2 SINE Alu -1 146 1 1 1096 572 223 6 0 chr6 67098008 67098183 -82418854 + CT-rich Low_complexity Low_complexity 1 176 0 1 1096 499 273 93 7 chr6 67098183 67098334 -82418703 - RSINE1 SINE B4 0 165 2 1 1096 1205 48 7 0 chr6 67098574 67098720 -82418317 - B1_Mus2 SINE Alu 0 147 1 1 1096 306 0 0 0 chr6 67100702 67100736 -82416301 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1096 2026 161 27 30 chr6 67101736 67102106 -82414931 + ORR1B1 LTR MaLR 9 348 -46 1 1096 1524 63 0 5 chr6 67102106 67102298 -82414739 + B2_Mm2 SINE B2 5 195 0 1 1096 1586 173 28 178 chr6 67102298 67102349 -82414688 + ORR1B1 LTR MaLR 324 367 0 1 1096 940 163 14 0 chr6 67102403 67102550 -82414487 + B1_Mur2 SINE Alu 1 149 0 1 1096 299 289 43 22 chr6 67103099 67103191 -82413846 + PB1D10 SINE Alu 3 96 -21 1 1096 481 214 208 23 chr6 67103209 67103364 -82413673 + B3 SINE B2 12 207 -9 1 1096 342 0 0 0 chr6 67104046 67104084 -82412953 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1096 180 0 0 0 chr6 67104637 67104657 -82412380 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1096 233 273 56 70 chr6 67104688 67104759 -82412278 + ID4 SINE ID 3 72 -11 1 1096 1430 68 10 40 chr6 67104962 67105161 -82411876 - B2_Mm1t SINE B2 0 193 1 1 1096 1465 59 5 21 chr6 67105168 67105359 -82411678 - B2_Mm1a SINE B2 -5 188 1 2 1096 25 0 0 0 chr6 67105392 67105417 -82411620 + AT_rich Low_complexity Low_complexity 1 25 0 2 1096 521 294 70 50 chr6 67106101 67106412 -82410625 - MTEb LTR MaLR -4 375 41 2 1096 227 341 23 47 chr6 67106573 67106593 -82410444 - PB1 SINE Alu -39 88 5 2 1096 366 227 15 0 chr6 67106593 67106659 -82410378 - ID_B1 SINE B4 -72 152 86 2 1096 279 353 61 52 chr6 67107185 67107397 -82409640 - MamRep605 Unknown Unknown -187 689 476 2 1096 315 291 92 26 chr6 67107441 67107593 -82409444 - MamRep605 Unknown Unknown -478 398 237 2 1096 361 129 0 28 chr6 67107729 67107801 -82409236 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1096 794 249 52 0 chr6 67107813 67107986 -82409051 - B3A SINE B2 -11 187 6 2 1096 319 291 43 75 chr6 67108005 67108098 -82408939 - B1F2 SINE Alu -51 98 9 2 1097 245 286 0 0 chr6 67109315 67109371 -82407666 + GA-rich Low_complexity Low_complexity 4 59 0 2 1097 201 359 67 30 chr6 67109499 67109634 -82407403 + MIRc SINE MIR 80 219 -49 2 1097 788 207 273 22 chr6 67110102 67110365 -82406672 + MTEa LTR MaLR 1 329 -50 2 1097 405 287 10 0 chr6 67110429 67110530 -82406507 - PB1D10 SINE Alu -13 104 3 2 1097 219 88 0 0 chr6 67110931 67110965 -82406072 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 1097 234 0 0 0 chr6 67111040 67111066 -82405971 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1097 263 212 15 0 chr6 67111301 67111367 -82405670 + A-rich Low_complexity Low_complexity 3 69 0 2 1097 368 185 97 49 chr6 67111523 67111654 -82405383 + PB1D10 SINE Alu 6 130 -20 2 1097 204 320 19 37 chr6 67112259 67112421 -82404616 + (CATA)n Simple_repeat Simple_repeat 1 159 0 2 1097 189 195 0 0 chr6 67112473 67112514 -82404523 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1097 362 310 11 49 chr6 67112588 67112771 -82404266 + (CATA)n Simple_repeat Simple_repeat 4 179 0 2 1097 239 203 14 0 chr6 67113525 67113594 -82403443 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1097 321 301 53 27 chr6 67113738 67113888 -82403149 - MIR SINE MIR -31 231 78 2 1097 443 297 177 35 chr6 67114046 67114357 -82402680 - ORR1E LTR MaLR -2 357 3 2 1097 320 280 81 3 chr6 67114936 67115075 -82401962 + MIR SINE MIR 14 160 -108 2 1097 1128 75 0 0 chr6 67115106 67115252 -82401785 + B1_Mus1 SINE Alu 3 148 0 2 1097 225 0 0 0 chr6 67115252 67115277 -82401760 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1097 1208 96 5 96 chr6 67116305 67116502 -82400535 + B2_Mm1t SINE B2 1 179 -14 2 1097 277 80 333 60 chr6 67116534 67116651 -82400386 + B2_Mm2 SINE B2 47 195 0 2 1097 528 314 44 89 chr6 67117034 67117237 -82399800 + B3A SINE B2 2 195 0 2 1097 216 275 24 59 chr6 67117334 67117419 -82399618 + ID SINE ID 2 83 -141 2 1097 357 246 102 57 chr6 67118509 67118686 -82398351 + RLTR42 LTR ERVK 55 239 0 2 1097 751 194 0 7 chr6 67118787 67118932 -82398105 + RLTR25B LTR ERVK 621 764 -264 2 1097 924 80 88 0 chr6 67118977 67119102 -82397935 + B1_Mus1 SINE Alu 4 139 -9 2 1097 1215 230 54 54 chr6 67119445 67119541 -82397496 - ORR1D1 LTR MaLR -35 339 231 2 1097 357 24 0 0 chr6 67119541 67119583 -82397454 + (CAGG)n Simple_repeat Simple_repeat 3 44 0 2 1097 1215 230 54 54 chr6 67119583 67119817 -82397220 - ORR1D1 LTR MaLR -144 230 9 2 1097 255 61 0 0 chr6 67120198 67120231 -82396806 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 2 1097 1158 66 66 6 chr6 67121078 67121245 -82395792 + B2_Mm1t SINE B2 2 178 -15 2 1097 186 43 0 0 chr6 67121245 67121268 -82395769 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1097 288 297 0 0 chr6 67121493 67121567 -82395470 + B1_Mur3 SINE Alu 5 78 -71 2 1097 304 311 90 0 chr6 67121601 67121768 -82395269 + L1M2 LINE L1 2449 2630 -4219 2 1097 320 87 385 28 chr6 67121922 67122032 -82395005 - B2_Mm2 SINE B2 0 195 47 2 1097 1107 127 35 0 chr6 67122083 67122256 -82394781 - B2_Mm1a SINE B2 -14 179 1 2 1097 662 298 35 92 chr6 67122257 67122351 -82394686 + L1_Mur3 LINE L1 2099 2188 -3692 2 1097 1372 70 27 0 chr6 67122351 67122537 -82394500 + B2_Mm1t SINE B2 1 191 -2 2 1097 662 298 35 92 chr6 67122537 67122963 -82394074 + L1_Mur3 LINE L1 2189 2589 -3291 2 1097 615 277 94 42 chr6 67122991 67123243 -82393794 + L1M2 LINE L1 3460 3746 -3099 2 1097 1033 158 0 28 chr6 67123243 67123404 -82393633 + B2_Mm2 SINE B2 1 161 -34 2 1097 284 45 0 43 chr6 67123404 67123451 -82393586 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2 1097 1033 158 0 28 chr6 67123451 67123471 -82393566 + B2_Mm2 SINE B2 162 177 -18 2 1097 615 262 92 45 chr6 67123471 67123653 -82393384 + L1M2 LINE L1 3747 3938 -2907 2 1097 1992 296 72 93 chr6 67123648 67124463 -82392574 + L1MA8 LINE L1 3851 4592 -1288 2 1097 2249 88 25 9 chr6 67124463 67124783 -82392254 - ORR1A2 LTR MaLR 0 327 3 2 1097 1992 296 72 93 chr6 67124783 67124888 -82392149 + L1MA8 LINE L1 4593 4695 -1185 2 1097 6995 83 19 77 chr6 67124888 67125820 -82391217 + RLTR13D5 LTR ERVK 1 871 -152 2 1097 1382 75 32 0 chr6 67125820 67126008 -82391029 + B2_Mm2 SINE B2 1 194 -1 2 1097 6995 83 19 77 chr6 67126008 67126160 -82390877 + RLTR13D5 LTR ERVK 872 1023 0 2 1097 1992 287 85 77 chr6 67126160 67127435 -82389602 + L1MA8 LINE L1 4696 5984 -1074 2 1097 3633 46 0 2 chr6 67127482 67127915 -82389122 - L1_Mus1 LINE L1 0 6567 6136 2 1097 35 0 0 0 chr6 67128126 67128161 -82388876 + AT_rich Low_complexity Low_complexity 1 35 0 2 1097 228 254 0 23 chr6 67129234 67129367 -82387670 + CT-rich Low_complexity Low_complexity 1 129 0 2 1097 666 194 14 12 chr6 67129961 67130122 -82386915 + ORR1D1 LTR MaLR 1 157 -213 2 1097 207 0 0 0 chr6 67130122 67130145 -82386892 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 2 1097 496 125 0 24 chr6 67130145 67130186 -82386851 + ORR1D1 LTR MaLR 158 169 -201 2 1097 953 188 262 20 chr6 67130180 67130474 -82386563 + MTC LTR MaLR 57 421 0 2 1097 1841 169 181 34 chr6 67130677 67130922 -82386115 - RMER16 LTR ERVK 0 533 284 2 1097 1588 47 5 0 chr6 67130922 67131114 -82385923 - B2_Mm1a SINE B2 0 193 1 2 1097 1841 169 181 34 chr6 67131114 67131333 -82385704 - RMER16 LTR ERVK -250 283 1 2 1097 237 286 35 35 chr6 67131999 67132082 -82384955 + RMER20A LTR ERVK 238 320 -196 2 1097 4922 141 113 19 chr6 67132082 67132232 -82384805 - RLTR25A LTR ERVK 0 1103 896 2 1097 768 42 0 0 chr6 67132232 67132328 -82384709 + (TC)n Simple_repeat Simple_repeat 2 97 0 2 1097 4922 141 113 19 chr6 67132328 67132866 -82384171 - RLTR25A LTR ERVK -208 895 336 2 1097 1619 38 0 0 chr6 67132866 67133052 -82383985 - B2_Mm1a SINE B2 -6 187 2 2 1097 4922 141 113 19 chr6 67133052 67133366 -82383671 - RLTR25A LTR ERVK -768 335 6 2 1097 1670 280 43 73 chr6 67134160 67134321 -82382716 + Lx7 LINE L1 4564 4688 -1455 2 1097 1066 70 42 14 chr6 67134321 67134465 -82382572 - B1_Mus1 SINE Alu 0 148 1 2 1097 1686 281 47 73 chr6 67134465 67135234 -82381803 + Lx7 LINE L1 4629 5406 -441 2 1097 313 312 83 7 chr6 67135234 67135379 -82381658 + RSINE1 SINE B4 3 158 -7 2 1097 1686 291 84 69 chr6 67135379 67135424 -82381613 + Lx7 LINE L1 5407 5417 -430 2 1097 1189 204 0 0 chr6 67135424 67135635 -82381402 + B3 SINE B2 1 211 -5 2 1097 1686 283 105 38 chr6 67135635 67136056 -82380981 + Lx7 LINE L1 5418 5909 -1787 2 1097 325 257 0 0 chr6 67136308 67136378 -82380659 + B1_Mur2 SINE Alu 51 120 -29 2 1097 237 259 0 0 chr6 67136781 67136835 -82380202 - MIRc SINE MIR -121 147 94 2 1097 309 109 0 0 chr6 67138915 67138961 -82378076 + (T)n Simple_repeat Simple_repeat 1 46 0 2 1097 616 157 52 0 chr6 67138977 67139092 -82377945 - B1_Mur2 SINE Alu -8 141 21 2 1097 21 82 0 0 chr6 67139160 67139209 -82377828 + AT_rich Low_complexity Low_complexity 1 49 0 2 1097 295 296 79 57 chr6 67139454 67139594 -82377443 - L1MB5 LINE L1 -17 6157 6015 2 1097 182 326 22 34 chr6 67139914 67140003 -82377034 + MIR SINE MIR 34 121 -141 2 1097 617 311 5 54 chr6 67140779 67140983 -82376054 - B3A SINE B2 -4 194 1 2 1097 501 17 0 0 chr6 67141000 67141058 -82375979 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1097 291 290 68 68 chr6 67141239 67141372 -82375665 - B4 SINE B4 -156 136 4 2 1097 361 277 118 0 chr6 67141384 67141503 -82375534 - B1F1 SINE Alu -7 142 10 2 1097 292 238 225 0 chr6 67141510 67141590 -82375447 + MLT1F1 LTR MaLR 425 522 -47 2 1097 229 345 40 7 chr6 67141668 67141817 -82375220 - MER46C DNA MER2_type -131 207 54 2 1097 286 294 15 0 chr6 67141818 67141886 -82375151 + ID4_ SINE ID 2 70 -13 2 1097 745 276 10 0 chr6 67141905 67142108 -82374929 + B3 SINE B2 1 205 -11 2 1097 889 263 24 0 chr6 67142144 67142349 -82374688 - B3 SINE B2 -4 212 3 2 1097 340 317 27 20 chr6 67142443 67142591 -82374446 + RSINE1 SINE B4 9 157 -8 2 1097 240 191 0 0 chr6 67142747 67142794 -82374243 + B3A SINE B2 2 48 -150 2 1097 180 0 0 0 chr6 67142870 67142890 -82374147 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1097 273 395 17 0 chr6 67143425 67143544 -82373493 - MIR SINE MIR -110 152 32 2 1097 264 229 0 0 chr6 67143749 67143810 -82373227 + ID4_ SINE ID 2 62 -21 2 1097 3415 33 5 0 chr6 67143833 67144227 -82372810 - MTA_Mm LTR MaLR 0 396 1 2 1097 635 216 72 0 chr6 67144935 67145060 -82371977 - B1_Mur3 SINE Alu -15 134 1 2 1097 333 205 90 0 chr6 67145658 67145736 -82371301 + B3 SINE B2 128 212 -4 2 1097 255 122 0 0 chr6 67145756 67145805 -82371232 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1097 423 276 26 0 chr6 67145895 67146011 -82371026 - MER2B DNA MER2_type -29 307 189 2 1097 248 146 0 0 chr6 67146182 67146223 -82370814 + RSINE1 SINE B4 93 133 -32 2 1097 284 0 28 0 chr6 67146223 67146259 -82370778 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1097 191 329 29 0 chr6 67146293 67146363 -82370674 - L2c LINE L2 -60 3327 3256 2 1097 1066 219 24 0 chr6 67146373 67146583 -82370454 + B3 SINE B2 2 216 0 2 1097 216 111 0 0 chr6 67147134 67147170 -82369867 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1097 1053 119 77 28 chr6 67147723 67147905 -82369132 - B2_Mm2 SINE B2 -2 193 3 2 1097 462 119 0 0 chr6 67147943 67148027 -82369010 + (TG)n Simple_repeat Simple_repeat 2 85 0 2 1097 330 252 84 34 chr6 67148163 67148282 -82368755 - B3 SINE B2 0 216 92 2 1097 1825 292 123 17 chr6 67148294 67149133 -82367904 - L1M2 LINE L1 -1855 4291 3361 2 1097 355 262 38 19 chr6 67149154 67149259 -82367778 - B3A SINE B2 -2 196 90 3 1097 1199 29 0 0 chr6 67149259 67149397 -82367640 + B1_Mus1 SINE Alu 2 139 -9 3 1097 246 32 0 0 chr6 67149397 67149428 -82367609 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1097 489 76 0 0 chr6 67149557 67149623 -82367414 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1097 474 265 10 0 chr6 67149630 67149728 -82367309 - PB1D7 SINE Alu -17 103 5 3 1097 1214 64 121 11 chr6 67150038 67150212 -82366825 + B2_Mm2 SINE B2 3 195 0 3 1097 207 186 0 0 chr6 67150222 67150265 -82366772 + CT-rich Low_complexity Low_complexity 2 44 0 3 1097 996 128 7 0 chr6 67150280 67150429 -82366608 - B1_Mur4 SINE Alu 0 150 1 3 1097 501 17 0 0 chr6 67151216 67151274 -82365763 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1097 510 205 231 0 chr6 67151282 67151438 -82365599 - MER2 DNA MER2_type -10 335 144 3 1097 413 296 9 0 chr6 67151477 67151592 -82365445 + L1MA5 LINE L1 5619 5734 -113 3 1097 394 108 13 13 chr6 67151592 67151667 -82365370 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 1097 383 285 24 13 chr6 67151667 67151840 -82365197 + L1MA5 LINE L1 5714 5931 -369 3 1097 1335 82 66 0 chr6 67151930 67152112 -82364925 + B2_Mm2 SINE B2 2 195 0 3 1097 372 22 0 0 chr6 67152360 67152405 -82364632 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1097 22 70 0 0 chr6 67152452 67152495 -82364542 + AT_rich Low_complexity Low_complexity 1 43 0 3 1097 423 0 0 0 chr6 67152505 67152552 -82364485 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1097 383 321 27 9 chr6 67152560 67152670 -82364367 - RSINE1 SINE B4 -6 159 48 3 1097 3206 226 110 15 chr6 67152722 67153561 -82363476 - RMER19B LTR ERVK -36 866 1 3 1097 350 241 164 8 chr6 67153615 67153749 -82363288 - L1M4 LINE L1 -449 5735 5581 3 1097 380 305 0 0 chr6 67153880 67154008 -82363029 - L1M4 LINE L1 -868 5278 5151 3 1097 1076 82 57 0 chr6 67154008 67154166 -82362871 + B2_Mm2 SINE B2 1 167 -28 3 1097 744 238 43 34 chr6 67154242 67154451 -82362586 - B3 SINE B2 -5 211 1 3 1097 295 346 40 0 chr6 67154472 67154573 -82362464 - PB1 SINE Alu -20 107 3 3 1097 509 281 16 72 chr6 67154587 67154825 -82362212 - B3A SINE B2 -2 214 1 3 1097 629 10 437 10 chr6 67155319 67155422 -82361615 + B1_Mm SINE Alu 1 147 0 3 1097 201 108 0 0 chr6 67155425 67155462 -82361575 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1097 309 82 0 0 chr6 67155465 67155514 -82361523 + (T)n Simple_repeat Simple_repeat 1 49 0 3 1097 198 0 0 0 chr6 67156171 67156193 -82360844 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1097 264 271 122 0 chr6 67156407 67156514 -82360523 + B3 SINE B2 95 214 -2 3 1097 1333 106 11 0 chr6 67156917 67157106 -82359931 + B2_Mm1a SINE B2 1 191 -2 3 1097 367 250 11 11 chr6 67157272 67157361 -82359676 + B1F1 SINE Alu 6 94 -55 3 1097 658 132 46 10 chr6 67157363 67157668 -82359369 + GA-rich Low_complexity Low_complexity 1 316 0 3 1097 851 217 18 0 chr6 67157675 67157841 -82359196 + B3 SINE B2 2 170 -46 3 1097 211 226 57 0 chr6 67158004 67158057 -82358980 + MIRm SINE MIR 70 125 -151 3 1097 1678 141 109 9 chr6 67158535 67158857 -82358180 + ORR1B1 LTR MaLR 41 394 0 3 1097 585 122 65 2 chr6 67158857 67158980 -82358057 + ORR1B1-int LTR MaLR 1 128 -1381 3 1097 303 128 0 0 chr6 67158961 67159008 -82358029 - ORR1A3-int LTR MaLR -949 1014 968 3 1097 451 184 0 72 chr6 67159014 67159125 -82357912 + ORR1B1-int LTR MaLR 538 640 -1323 3 1097 268 125 0 0 chr6 67159125 67159165 -82357872 + MERVL_2A-int LTR ERVL 5719 5758 -3 3 1097 1304 174 0 191 chr6 67159167 67159522 -82357515 + MT2B LTR ERVL 1 287 -314 3 1097 5748 155 20 101 chr6 67159474 67160837 -82356200 + ORR1B1-int LTR MaLR 711 1963 0 3 1097 1987 188 12 47 chr6 67160837 67161245 -82355792 + ORR1B1 LTR MaLR 1 394 0 3 1097 291 339 53 18 chr6 67161245 67161416 -82355621 - MIR SINE MIR -61 201 25 3 1097 187 346 0 25 chr6 67161941 67162021 -82355016 + L2 LINE L2 2809 2886 -533 3 1097 205 146 0 47 chr6 67162053 67162096 -82354941 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 3 1097 334 145 40 0 chr6 67162208 67162284 -82354753 + GA-rich Low_complexity Low_complexity 1 79 0 3 1097 1649 101 33 164 chr6 67162569 67162694 -82354343 + ORR1A2 LTR MaLR 1 107 -220 3 1097 683 91 264 0 chr6 67162694 67162804 -82354233 + B1_Mus1 SINE Alu 1 139 -9 3 1097 1649 101 33 164 chr6 67162804 67163045 -82353992 + ORR1A2 LTR MaLR 108 319 -8 3 1097 11111 128 55 20 chr6 67163049 67164946 -82352091 + ORR1A2-int LTR MaLR 1 1963 0 3 1097 2335 104 3 66 chr6 67164946 67165295 -82351742 + ORR1A2 LTR MaLR 1 327 0 3 1097 1259 78 50 11 chr6 67165466 67165648 -82351389 + B2_Mm2 SINE B2 3 191 -4 3 1097 476 98 0 35 chr6 67165661 67165674 -82351363 + (GAAA)n Simple_repeat Simple_repeat 2 14 0 3 1097 1342 89 10 30 chr6 67165674 67165871 -82351166 + B2_Mm1a SINE B2 1 193 0 3 1097 476 98 0 35 chr6 67165871 67165942 -82351095 + (GAAA)n Simple_repeat Simple_repeat 3 71 0 3 1097 420 106 0 0 chr6 67166181 67166247 -82350790 + ORR1B2 LTR MaLR 166 231 -136 3 1097 2301 193 66 25 chr6 67166250 67166870 -82350167 + ORR1B1-int LTR MaLR 118 702 -1261 3 1097 1562 38 43 0 chr6 67166870 67167055 -82349982 + B2_Mm1a SINE B2 1 193 0 3 1097 3804 194 31 23 chr6 67167055 67167938 -82349099 + ORR1B1-int LTR MaLR 620 1509 0 3 1097 1705 161 56 3 chr6 67167938 67168244 -82348793 + ORR1B1 LTR MaLR 1 322 -45 3 1097 1131 82 7 0 chr6 67168271 67168417 -82348620 - B1_Mus1 SINE Alu 0 148 2 3 1097 2444 129 39 5 chr6 67168426 67168807 -82348230 - ORR1B1 LTR MaLR 0 394 1 3 1097 3661 194 71 35 chr6 67168854 67169780 -82347257 + ORR1B1-int LTR MaLR 1 960 -549 3 1097 983 138 0 0 chr6 67169784 67169943 -82347094 + ORR1B1-int LTR MaLR 1350 1508 -1 3 1097 1817 175 58 63 chr6 67169944 67169990 -82347047 + ORR1B1 LTR MaLR 1 44 -350 3 1097 1357 194 51 29 chr6 67169990 67170341 -82346696 + RLTR10D LTR ERVK 1 359 0 3 1097 1817 175 58 63 chr6 67170341 67170690 -82346347 + ORR1B1 LTR MaLR 45 394 0 3 1097 780 122 98 0 chr6 67170856 67170979 -82346058 + B1_Mur4 SINE Alu 1 135 -15 3 1097 1504 68 5 0 chr6 67172014 67172206 -82344831 + B2_Mm1a SINE B2 1 193 0 3 1097 1618 224 16 11 chr6 67172970 67173336 -82343701 - MTE2b LTR MaLR -4 375 8 3 1097 180 111 0 0 chr6 67175016 67175043 -82341994 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1097 232 274 0 16 chr6 67175551 67175614 -82341423 - MER5B DNA MER1_type -107 71 10 3 1097 261 330 114 61 chr6 67175742 67176314 -82340723 - L2 LINE L2 -575 2844 2243 3 1097 549 333 6 12 chr6 67176653 67176817 -82340220 + RSINE1 SINE B4 3 165 0 3 1097 199 312 106 11 chr6 67177051 67177145 -82339892 - MIRb SINE MIR -71 197 95 3 1097 40 49 0 0 chr6 67177160 67177221 -82339816 + AT_rich Low_complexity Low_complexity 1 61 0 3 1097 279 211 0 0 chr6 67177476 67177528 -82339509 + ID4_ SINE ID 21 72 -11 3 1097 276 254 63 0 chr6 67177477 67177540 -82339497 + ID SINE ID 23 89 -135 3 1097 261 0 0 0 chr6 67177575 67177604 -82339433 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 3 1097 1282 19 0 0 chr6 67177604 67177762 -82339275 - B2_Mm1a SINE B2 -35 158 1 3 1097 537 241 63 6 chr6 67177996 67178155 -82338882 - MIRc SINE MIR -1 267 100 3 1097 425 268 32 8 chr6 67179734 67179858 -82337179 + RSINE1 SINE B4 35 161 -4 3 1097 216 0 0 0 chr6 67179975 67179999 -82337038 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 3 1097 210 37 0 0 chr6 67180648 67180675 -82336362 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 3 1097 1108 56 35 0 chr6 67180677 67180819 -82336218 - B1_Mus2 SINE Alu 0 147 1 3 1097 182 91 30 0 chr6 67180829 67180862 -82336175 + (TAA)n Simple_repeat Simple_repeat 3 36 0 3 1097 336 111 0 0 chr6 67180913 67180976 -82336061 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1097 432 0 0 0 chr6 67180999 67181047 -82335990 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1097 329 43 21 0 chr6 67181254 67181301 -82335736 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1097 464 318 65 0 chr6 67181409 67181563 -82335474 + RSINE1 SINE B4 2 165 0 3 1097 405 0 0 0 chr6 67181570 67181615 -82335422 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 3 1097 643 277 0 0 chr6 67181620 67181750 -82335287 - B1_Mus1 SINE Alu -18 130 1 3 1097 721 183 55 21 chr6 67181789 67181934 -82335103 - B1_Mur4 SINE Alu 0 150 1 3 1097 928 223 19 10 chr6 67181953 67182161 -82334876 + B3 SINE B2 1 210 -6 3 1097 190 267 0 0 chr6 67182509 67182554 -82334483 + L3 LINE CR1 4422 4466 -23 3 1097 283 89 36 0 chr6 67183275 67183331 -82333706 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 3 1097 267 231 164 18 chr6 67183332 67183442 -82333595 - L1MDa LINE L1 -3233 3304 3179 3 1097 305 336 44 0 chr6 67183451 67183564 -82333473 - B1F SINE Alu -28 121 4 3 1097 21 0 0 0 chr6 67183573 67183594 -82333443 + AT_rich Low_complexity Low_complexity 1 21 0 3 1097 491 274 0 9 chr6 67183650 67183757 -82333280 - PB1D10 SINE Alu -2 115 10 3 1097 1131 75 0 7 chr6 67183793 67183940 -82333097 - B1_Mus1 SINE Alu 0 148 3 3 1097 261 191 39 87 chr6 67183946 67183997 -82333040 - L1MDa LINE L1 -4220 2413 2359 3 1097 417 20 0 0 chr6 67183997 67184047 -82332990 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1097 261 191 39 87 chr6 67184047 67184098 -82332939 - L1MDa LINE L1 -4275 2358 2317 3 1097 740 224 7 20 chr6 67184105 67184255 -82332782 - B1_Mur2 SINE Alu 0 149 2 3 1097 829 230 80 5 chr6 67184447 67184648 -82332389 + B3 SINE B2 1 216 0 3 1097 1247 48 0 0 chr6 67184779 67184925 -82332112 - B1_Mm SINE Alu 0 147 2 3 1097 1082 106 0 0 chr6 67185129 67185270 -82331767 + B1_Mus1 SINE Alu 2 142 -6 3 1097 243 0 0 0 chr6 67185273 67185300 -82331737 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1097 331 240 47 29 chr6 67185779 67185918 -82331119 + MIRm SINE MIR 21 166 -110 3 1097 861 94 148 0 chr6 67186303 67186431 -82330606 + B1_Mus1 SINE Alu 2 148 0 3 1097 221 163 0 0 chr6 67186431 67186474 -82330563 + A-rich Low_complexity Low_complexity 1 43 0 3 1097 630 26 0 0 chr6 67187603 67187679 -82329358 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1097 264 59 0 0 chr6 67188553 67188587 -82328450 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1097 874 220 45 66 chr6 67188729 67188972 -82328065 - RLTR42 LTR ERVK 0 239 2 3 1097 1467 224 31 3 chr6 67188973 67189296 -82327741 - RLTR42-int LTR ERVK 0 5522 5191 3 1097 1093 74 0 0 chr6 67189297 67189432 -82327605 + B1_Mus1 SINE Alu 2 136 -12 3 1097 195 42 0 0 chr6 67189432 67189456 -82327581 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 3 1097 15059 151 89 97 chr6 67189456 67189548 -82327489 - RLTR42-int LTR ERVK -1605 3917 3819 3 1097 4457 20 0 0 chr6 67189548 67190041 -82326996 - MT2_Mm LTR ERVL 0 493 1 3 1097 15059 151 89 97 chr6 67190041 67190860 -82326177 - RLTR42-int LTR ERVK -1704 3818 2968 3 1097 1468 68 21 5 chr6 67190860 67191052 -82325985 + B2_Mm2 SINE B2 1 195 0 4 1097 15059 151 89 97 chr6 67191052 67191803 -82325234 - RLTR42-int LTR ERVK -2555 2967 2225 3 1097 1124 90 0 0 chr6 67191803 67191948 -82325089 + B1_Mus1 SINE Alu 4 148 0 4 1097 15059 151 89 97 chr6 67191948 67192319 -82324718 - RLTR42-int LTR ERVK -3298 2224 1936 3 1097 1229 48 0 0 chr6 67192319 67192465 -82324572 - B1_Mm SINE Alu -1 146 1 4 1097 15059 151 89 97 chr6 67192465 67192650 -82324387 - RLTR42-int LTR ERVK -3587 1935 1830 3 1097 282 29 0 0 chr6 67192650 67192685 -82324352 + (CTAA)n Simple_repeat Simple_repeat 3 37 0 4 1097 15059 151 89 97 chr6 67192685 67193407 -82323630 - RLTR42-int LTR ERVK -3693 1829 1021 3 1097 2936 41 80 24 chr6 67193407 67193782 -82323255 - MTA_Mm LTR MaLR 0 396 1 4 1097 15059 151 89 97 chr6 67193782 67194408 -82322629 - RLTR42-int LTR ERVK -4502 1020 374 3 1097 1817 178 43 11 chr6 67194408 67194777 -82322260 - RLTR14 LTR ERV1 0 382 2 4 1097 251 176 98 0 chr6 67194798 67194849 -82322188 - RLTR42-int LTR ERVK -5147 375 320 3 1097 247 255 0 0 chr6 67194849 67194900 -82322137 + B1_Mus1 SINE Alu 1 51 -97 4 1097 304 194 50 79 chr6 67195283 67195384 -82321653 + PB1D9 SINE Alu 18 115 -5 4 1097 756 86 0 0 chr6 67195386 67195491 -82321546 + (GGAA)n Simple_repeat Simple_repeat 1 105 0 4 1097 289 267 17 110 chr6 67195507 67195625 -82321412 + B3A SINE B2 4 110 -88 4 1097 497 262 17 36 chr6 67195531 67195696 -82321341 + B4A SINE B4 27 190 -102 4 1097 261 0 0 0 chr6 67195791 67195820 -82321217 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1097 587 78 11 0 chr6 67195835 67195925 -82321112 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 1097 1144 194 224 3 chr6 67196276 67196602 -82320435 - MTD LTR MaLR -2 417 20 4 1097 384 22 0 0 chr6 67197551 67197596 -82319441 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1097 501 254 15 92 chr6 67197596 67197726 -82319311 - RSINE1 SINE B4 -37 128 9 4 1097 741 93 8 30 chr6 67197851 67197984 -82319053 - BC1_Mm scRNA scRNA -22 130 1 4 1097 22 0 0 0 chr6 67197984 67198006 -82319031 + AT_rich Low_complexity Low_complexity 1 22 0 4 1097 279 0 0 0 chr6 67198040 67198071 -82318966 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1097 1156 57 0 0 chr6 67198071 67198211 -82318826 - B1_Mus1 SINE Alu -8 140 1 4 1097 607 225 62 0 chr6 67198247 67198376 -82318661 - B3A SINE B2 -61 137 1 4 1097 1320 62 79 0 chr6 67198894 67199071 -82317966 - B2_Mm1t SINE B2 -1 192 2 4 1097 349 229 116 62 chr6 67199136 67199248 -82317789 + PB1D7 SINE Alu 3 120 0 4 1097 261 114 0 0 chr6 67200054 67200089 -82316948 - RLTR14-int LTR ERV1 -497 4820 4786 4 1097 420 307 122 16 chr6 67200546 67200855 -82316182 - RLTR4_MM-int LTR ERV1 -2254 5198 4948 4 1097 451 301 136 20 chr6 67201319 67201620 -82315417 - RLTR4_MM-int LTR ERV1 -3169 4432 4219 4 1097 26 64 0 0 chr6 67201641 67201688 -82315349 + AT_rich Low_complexity Low_complexity 1 47 0 4 1097 215 222 0 12 chr6 67202016 67202098 -82314939 + CT-rich Low_complexity Low_complexity 2 82 0 4 1097 1251 71 5 9 chr6 67202373 67202601 -82314436 + (TTC)n Simple_repeat Simple_repeat 1 227 0 4 1097 209 57 0 28 chr6 67202601 67202636 -82314401 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1097 921 43 0 0 chr6 67202636 67202753 -82314284 - B1_Mm SINE Alu -7 140 24 4 1097 1550 52 5 0 chr6 67202943 67203134 -82313903 - B2_Mm1a SINE B2 0 193 2 4 1097 250 294 45 71 chr6 67203313 67203467 -82313570 - RLTR4_MM-int LTR ERV1 -5082 235 86 4 1097 405 272 21 42 chr6 67203565 67203707 -82313330 - RLTR14 LTR ERV1 -16 366 228 4 1097 645 215 102 24 chr6 67203916 67204083 -82312954 - B3 SINE B2 -28 188 9 4 1097 195 250 23 116 chr6 67204150 67204236 -82312801 - MIRm SINE MIR -108 168 91 4 1097 903 266 14 5 chr6 67204549 67204768 -82312269 + B4 SINE B4 2 222 -70 4 1097 252 333 92 38 chr6 67205760 67205944 -82311093 + MIR SINE MIR 35 228 -34 4 1097 603 217 7 77 chr6 67206052 67206207 -82310830 - B1_Mur3 SINE Alu 0 149 6 4 1097 1289 117 0 21 chr6 67206223 67206415 -82310622 - B2_Mm2 SINE B2 -7 188 1 4 1097 724 227 0 0 chr6 67206821 67206953 -82310084 + B3A SINE B2 1 132 -66 4 1097 4217 59 15 0 chr6 67206981 67207504 -82309533 - L1_Mus1 LINE L1 0 6567 6037 4 1097 342 0 0 0 chr6 67207509 67207547 -82309490 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 1097 595 191 26 9 chr6 67207547 67207663 -82309374 - B1_Mur1 SINE Alu -29 120 3 4 1097 210 258 15 0 chr6 67207672 67207738 -82309299 + CT-rich Low_complexity Low_complexity 4 70 0 4 1097 693 189 76 0 chr6 67208176 67208308 -82308729 + B1_Mus2 SINE Alu 1 142 -5 4 1097 1420 99 16 0 chr6 67208315 67208507 -82308530 + B2_Mm2 SINE B2 1 195 0 4 1097 2481 184 42 119 chr6 67208544 67209205 -82307832 + RMER19C LTR ERVK 1 610 -1 4 1097 1051 95 0 45 chr6 67209229 67209383 -82307654 + B1_Mus1 SINE Alu 2 148 0 4 1097 342 0 0 0 chr6 67209383 67209421 -82307616 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1097 28 29 0 0 chr6 67209450 67209485 -82307552 + AT_rich Low_complexity Low_complexity 1 35 0 4 1097 223 177 32 0 chr6 67209504 67209566 -82307471 + GA-rich Low_complexity Low_complexity 4 67 0 4 1097 368 304 47 47 chr6 67209593 67209783 -82307254 + L1MB7 LINE L1 5988 6177 -7 4 1097 204 298 59 12 chr6 67209907 67209992 -82307045 + MIR SINE MIR 170 258 -4 4 1097 4137 210 43 52 chr6 67210021 67210908 -82306129 + Lx7 LINE L1 6675 7548 -148 4 1097 1631 21 21 0 chr6 67210908 67211096 -82305941 - B2_Mm1a SINE B2 0 193 2 4 1097 4137 210 43 52 chr6 67211096 67211237 -82305800 + Lx7 LINE L1 7549 7693 -3 4 1097 246 289 0 57 chr6 67211470 67211558 -82305479 + B4 SINE B4 2 84 -208 4 1097 455 233 87 0 chr6 67211679 67211829 -82305208 + L1M4 LINE L1 5044 5206 -940 4 1097 183 80 0 0 chr6 67212036 67212061 -82304976 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 1097 521 244 122 0 chr6 67212081 67212212 -82304825 - RSINE1 SINE B4 -16 149 3 4 1097 1697 295 48 16 chr6 67212226 67213039 -82303998 + L1MB8 LINE L1 5147 5991 -187 4 1097 815 78 0 0 chr6 67213121 67213237 -82303800 - B1_Mus2 SINE Alu 0 147 32 4 1097 525 202 0 0 chr6 67213315 67213409 -82303628 - PB1D7 SINE Alu 0 120 27 4 1097 273 136 0 0 chr6 67213483 67213526 -82303511 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1097 886 32 192 8 chr6 67213526 67213651 -82303386 - B1_Mus1 SINE Alu 0 148 1 4 1097 273 136 0 0 chr6 67213651 67213666 -82303371 + (T)n Simple_repeat Simple_repeat 1 15 0 4 1097 645 14 0 0 chr6 67214017 67214091 -82302946 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1097 810 212 114 0 chr6 67214156 67214349 -82302688 + B3 SINE B2 2 216 0 4 1097 873 244 5 45 chr6 67214436 67214659 -82302378 + B3 SINE B2 1 214 -2 4 1097 257 311 40 40 chr6 67214680 67214804 -82302233 + MIR SINE MIR 137 260 -2 4 1097 913 242 71 12 chr6 67214856 67215111 -82301926 + B4A SINE B4 4 273 -19 4 1097 182 247 157 0 chr6 67215755 67215844 -82301193 + MIRb SINE MIR 90 192 -76 4 1097 554 186 158 17 chr6 67216067 67216187 -82300850 - B1_Mur3 SINE Alu -12 137 1 4 1097 215 284 52 39 chr6 67219466 67219543 -82297494 - ID4 SINE ID -3 80 3 4 1097 1264 34 0 0 chr6 67220923 67221070 -82295967 + B1_Mus2 SINE Alu 1 147 0 4 1097 201 39 0 0 chr6 67222528 67222554 -82294483 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 4 1097 367 281 48 19 chr6 67223043 67223148 -82293889 - PB1D10 SINE Alu -9 108 1 4 1097 396 216 9 93 chr6 67223590 67223697 -82293340 - B3 SINE B2 -9 207 110 4 1097 360 269 165 57 chr6 67223951 67224109 -82292928 + RMER15 LTR ERVL 388 562 -13 4 1097 399 237 106 46 chr6 67224195 67224337 -82292700 - L1M2 LINE L1 -723 5577 5425 4 1097 282 259 189 31 chr6 67224337 67224528 -82292509 - ID_B1 SINE B4 -1 223 3 4 1097 399 237 106 46 chr6 67224528 67224602 -82292435 - L1M2 LINE L1 -876 5424 5348 4 1097 503 176 8 122 chr6 67224656 67224779 -82292258 - B1_Mur3 SINE Alu 0 149 41 4 1097 362 209 133 26 chr6 67224864 67224977 -82292060 - L1M2 LINE L1 -964 5179 5055 4 1097 442 281 155 11 chr6 67225008 67225195 -82291842 - B3 SINE B2 -1 215 2 4 1097 591 222 40 0 chr6 67225202 67225328 -82291709 - B1_Mur1 SINE Alu -7 142 12 4 1097 1383 12 0 0 chr6 67225328 67225489 -82291548 - MERVL-int LTR ERVL -4658 827 667 4 1097 418 208 32 24 chr6 67225558 67225681 -82291356 - L1M2 LINE L1 -1223 4920 4797 4 1097 304 327 139 0 chr6 67225795 67225896 -82291141 + ID_B1 SINE B4 82 196 -28 4 1097 762 180 22 0 chr6 67226064 67226203 -82290834 + B1_Mur4 SINE Alu 9 150 0 4 1097 1139 68 0 7 chr6 67226207 67226355 -82290682 + B1_Mus1 SINE Alu 2 148 0 4 1097 376 273 83 0 chr6 67227528 67227649 -82289388 - B3 SINE B2 -3 213 83 4 1097 698 186 21 28 chr6 67228004 67228148 -82288889 - B1_Mus1 SINE Alu -5 143 1 4 1097 243 0 0 0 chr6 67228170 67228197 -82288840 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1097 1182 100 71 16 chr6 67228197 67228380 -82288657 - B2_Mm2 SINE B2 0 195 3 4 1097 1224 54 0 0 chr6 67228631 67228778 -82288259 - B1_Mm SINE Alu 0 147 1 4 1097 1161 116 0 11 chr6 67228923 67228938 -82288099 - B2_Mm2 SINE B2 -22 173 159 4 1097 432 0 0 0 chr6 67228938 67228986 -82288051 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 4 1097 1161 116 0 11 chr6 67228986 67229144 -82287893 - B2_Mm2 SINE B2 -37 158 2 4 1097 464 309 103 56 chr6 67229665 67229898 -82287139 + MER44B DNA MER2_type 1 244 -306 4 1097 1157 163 82 3 chr6 67230883 67231197 -82285840 - RMER4B LTR ERVK -57 528 162 4 1097 658 244 30 0 chr6 67231929 67232064 -82284973 - B1_Mur1 SINE Alu -9 140 2 4 1097 708 188 79 14 chr6 67232324 67232464 -82284573 + B1_Mur4 SINE Alu 2 150 0 4 1097 334 185 361 0 chr6 67232713 67232821 -82284216 - B1_Mus2 SINE Alu 0 147 1 4 1097 225 41 39 58 chr6 67232832 67232884 -82284153 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 4 1097 722 217 124 53 chr6 67232905 67233114 -82283923 - URR1A DNA MER1_type 0 226 3 4 1097 279 0 0 0 chr6 67233231 67233262 -82283775 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 4 1097 251 309 104 21 chr6 67233482 67233578 -82283459 + PB1D10 SINE Alu 5 108 -9 5 1097 287 211 14 40 chr6 67233578 67233652 -82283385 + ID SINE ID 2 73 -151 5 1097 198 0 0 0 chr6 67233782 67233804 -82283233 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1097 189 0 0 0 chr6 67234041 67234062 -82282975 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1097 237 237 50 17 chr6 67236661 67236721 -82280316 - ID4 SINE ID -10 73 12 5 1097 222 116 0 0 chr6 67236897 67236940 -82280097 + (T)n Simple_repeat Simple_repeat 1 43 0 5 1097 23 54 0 0 chr6 67238068 67238105 -82278932 + AT_rich Low_complexity Low_complexity 1 37 0 5 1097 248 287 179 17 chr6 67238265 67238382 -82278655 - B1_Mur1 SINE Alu -13 136 1 5 1097 731 282 209 6 chr6 67238724 67239063 -82277974 + MTD LTR MaLR 12 419 0 5 1097 508 244 30 48 chr6 67239119 67239290 -82277747 + MTD LTR MaLR 183 405 -14 5 1097 291 233 124 25 chr6 67239447 67239584 -82277453 - B3 SINE B2 -40 176 11 5 1098 306 0 0 0 chr6 67241910 67241944 -82275093 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1098 489 34 0 0 chr6 67241944 67242002 -82275035 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1098 232 233 317 0 chr6 67243217 67243277 -82273760 - PB1D9 SINE Alu -24 96 18 5 1098 892 64 77 39 chr6 67243400 67243530 -82273507 + B1_Mus2 SINE Alu 1 135 -12 5 1098 180 0 0 0 chr6 67243789 67243809 -82273228 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 1098 306 253 26 13 chr6 67244403 67244479 -82272558 + PB1D9 SINE Alu 29 105 -15 5 1098 366 61 15 29 chr6 67244540 67244608 -82272429 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1098 261 0 0 0 chr6 67245118 67245147 -82271890 + (TGGGGG)n Simple_repeat Simple_repeat 3 31 0 5 1098 1228 143 27 27 chr6 67245926 67246149 -82270888 - URR1A DNA MER1_type -3 223 1 5 1098 785 234 9 12 chr6 67246252 67246442 -82270595 - B3 SINE B2 0 198 1 5 1098 1158 75 0 13 chr6 67246478 67246627 -82270410 - B1_Mm SINE Alu 0 147 1 5 1098 928 112 149 0 chr6 67246785 67246946 -82270091 - B2_Mm1t SINE B2 -7 186 2 5 1098 394 256 244 16 chr6 67247004 67247131 -82269906 - RSINE1 SINE B4 -7 158 3 5 1098 305 309 52 31 chr6 67247337 67247434 -82269603 + MLT1J LTR MaLR 147 245 -267 5 1098 763 265 44 36 chr6 67247763 67248037 -82269000 + B4A SINE B4 2 277 -15 5 1098 1177 68 0 0 chr6 67248356 67248502 -82268535 + B1_Mm SINE Alu 2 147 0 5 1098 211 93 0 69 chr6 67248502 67248560 -82268477 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 5 1098 1037 151 32 5 chr6 67249144 67249331 -82267706 - B2_Mm1t SINE B2 -1 192 1 5 1098 1026 233 5 0 chr6 67249643 67249853 -82267184 - B3 SINE B2 -5 211 1 5 1098 242 329 41 0 chr6 67250179 67250252 -82266785 + B1F2 SINE Alu 2 77 -72 5 1098 1322 86 0 16 chr6 67253981 67254170 -82262867 - B2_Mm2 SINE B2 -5 190 5 5 1098 548 119 77 268 chr6 67254713 67254896 -82262141 + B1_Mur4 SINE Alu 2 149 -1 5 1098 188 148 0 53 chr6 67254896 67254953 -82262084 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 5 1098 565 237 109 83 chr6 67254972 67255165 -82261872 - B3A SINE B2 0 198 1 5 1098 355 219 0 0 chr6 67256654 67256718 -82260319 + PB1D9 SINE Alu 5 68 -52 5 1098 453 191 0 0 chr6 67257204 67257314 -82259723 + CT-rich Low_complexity Low_complexity 1 110 0 5 1098 629 160 59 37 chr6 67257314 67257450 -82259587 - B1F2 SINE Alu -6 143 5 5 1098 234 333 0 0 chr6 67257518 67257581 -82259456 - MIR SINE MIR -31 231 169 5 1098 480 209 71 62 chr6 67258112 67258123 -82258914 - B1_Mur2 SINE Alu -4 145 137 5 1098 306 0 0 0 chr6 67258123 67258157 -82258880 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1098 480 209 71 62 chr6 67258157 67258257 -82258780 - B1_Mur2 SINE Alu -13 136 33 5 1098 316 159 47 16 chr6 67258384 67258448 -82258589 - MTD LTR MaLR -8 413 348 5 1098 1056 43 0 42 chr6 67258460 67258604 -82258433 - B1_Mus1 SINE Alu 0 148 11 5 1098 1234 230 149 7 chr6 67258609 67258898 -82258139 - MTD LTR MaLR -89 330 1 5 1098 867 203 99 50 chr6 67259205 67259407 -82257630 + B4 SINE B4 1 212 -80 5 1098 424 189 19 19 chr6 67259410 67259518 -82257519 + CT-rich Low_complexity Low_complexity 3 110 0 5 1098 22 70 0 0 chr6 67260055 67260098 -82256939 + AT_rich Low_complexity Low_complexity 1 43 0 5 1098 435 92 0 0 chr6 67260491 67260556 -82256481 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1098 1142 76 0 0 chr6 67260744 67260889 -82256148 - B1_Mus1 SINE Alu 0 148 4 5 1098 25 65 0 0 chr6 67261138 67261184 -82255853 + AT_rich Low_complexity Low_complexity 1 46 0 5 1098 3380 42 0 0 chr6 67261474 67261902 -82255135 + L1Md_T LINE L1 5159 5586 -297 5 1098 8315 39 0 1 chr6 67261902 67262897 -82254140 + L1Md_T LINE L1 5587 6580 -2 5 1098 30 27 0 0 chr6 67262903 67262940 -82254097 + AT_rich Low_complexity Low_complexity 1 37 0 5 1098 394 213 28 44 chr6 67262940 67263122 -82253915 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 5 1098 229 375 0 0 chr6 67263181 67263261 -82253776 - PB1D10 SINE Alu 0 117 38 5 1098 549 0 0 0 chr6 67263304 67263365 -82253672 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1098 3089 37 8 8 chr6 67263365 67263742 -82253295 - L1Md_F3 LINE L1 -20 6564 6188 5 1098 289 255 149 58 chr6 67263874 67264082 -82252955 + MLT1J LTR MaLR 79 305 -207 5 1098 866 76 52 6 chr6 67264111 67264283 -82252754 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1098 820 223 69 10 chr6 67264492 67264696 -82252341 + B3 SINE B2 1 216 0 5 1098 1194 191 338 6 chr6 67264702 67265244 -82251793 + Lx6 LINE L1 6713 7434 -26 5 1098 211 157 0 89 chr6 67265244 67265300 -82251737 + A-rich Low_complexity Low_complexity 1 51 0 5 1098 1347 87 11 0 chr6 67265741 67265924 -82251113 - B2_Mm1t SINE B2 -7 186 2 5 1098 311 244 145 40 chr6 67265992 67266116 -82250921 - MIRb SINE MIR -129 139 3 5 1098 184 325 107 33 chr6 67266674 67266795 -82250242 + MIRm SINE MIR 18 147 -129 5 1098 231 377 44 37 chr6 67267122 67267257 -82249780 + MamRep605 Unknown Unknown 251 386 -490 5 1098 359 267 93 41 chr6 67267407 67267579 -82249458 + MamRep605 Unknown Unknown 481 661 -215 5 1098 504 254 169 0 chr6 67267805 67267923 -82249114 - B1F1 SINE Alu -5 144 7 5 1098 186 43 0 0 chr6 67268180 67268203 -82248834 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1098 225 0 0 0 chr6 67268552 67268577 -82248460 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1098 190 250 44 59 chr6 67269200 67269268 -82247769 + MIRc SINE MIR 4 70 -198 5 1098 295 230 40 13 chr6 67269362 67269437 -82247600 - ID4_ SINE ID -6 77 1 5 1098 449 307 54 16 chr6 67269653 67269782 -82247255 + RSINE1 SINE B4 3 136 -29 5 1098 334 340 29 0 chr6 67269946 67270049 -82246988 - PB1 SINE Alu -10 117 12 5 1098 193 364 18 26 chr6 67270205 67270318 -82246719 - MIRb SINE MIR -67 201 90 5 1098 2807 38 191 3 chr6 67270459 67270826 -82246211 + RLTR10C LTR ERVK 1 436 0 5 1098 704 237 51 51 chr6 67271479 67271675 -82245362 - B3 SINE B2 -19 197 2 5 1098 717 153 145 0 chr6 67271811 67271942 -82245095 + B1_Mur4 SINE Alu 1 150 0 5 1098 1744 303 69 43 chr6 67271947 67273279 -82243758 + L1_Mur3 LINE L1 1788 3153 -2727 5 1098 1412 277 55 28 chr6 67273284 67273661 -82243376 + L1_Mur3 LINE L1 3715 4111 -1769 5 1098 2297 203 140 6 chr6 67273661 67274197 -82242840 + RMER19C LTR ERVK 1 608 -3 5 1098 1412 277 55 28 chr6 67274197 67274432 -82242605 + L1_Mur3 LINE L1 4112 4344 -1536 5 1098 21 36 0 0 chr6 67274508 67274536 -82242501 + AT_rich Low_complexity Low_complexity 1 28 0 5 1098 582 335 20 0 chr6 67274551 67274703 -82242334 - RSINE1 SINE B4 -2 163 9 5 1098 1154 264 35 11 chr6 67274705 67275077 -82241960 + L1M2 LINE L1 4443 4823 -1320 5 1098 611 252 8 0 chr6 67275077 67275196 -82241841 + B3A SINE B2 2 121 -77 5 1098 1192 182 235 38 chr6 67275201 67275520 -82241517 - ORR1B1 LTR MaLR -8 386 5 5 1098 414 127 0 0 chr6 67275573 67275644 -82241393 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1098 28 0 0 0 chr6 67275644 67275672 -82241365 + AT_rich Low_complexity Low_complexity 1 28 0 5 1098 614 259 43 43 chr6 67275678 67275908 -82241129 + L1M2 LINE L1 4802 5031 -1112 5 1098 229 323 7 121 chr6 67276080 67276221 -82240816 + MT2B LTR ERVL 133 257 -344 5 1098 751 199 14 21 chr6 67276123 67276267 -82240770 + B1_Mur1 SINE Alu 6 148 -1 5 1098 2640 250 108 55 chr6 67276306 67277159 -82239878 + Lx8 LINE L1 6105 7014 -459 5 1098 4335 106 15 11 chr6 67277159 67277501 -82239536 + Lx LINE L1 5989 6339 -315 5 1098 180 0 0 0 chr6 67277501 67277521 -82239516 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 5 1098 4335 106 15 11 chr6 67277521 67277826 -82239211 + Lx LINE L1 6340 6639 -15 5 1098 396 0 0 0 chr6 67277826 67277870 -82239167 + (TAA)n Simple_repeat Simple_repeat 2 45 0 5 1098 1624 253 129 57 chr6 67277870 67277987 -82239050 + Lx8 LINE L1 7015 7127 -346 5 1098 316 268 25 50 chr6 67278014 67278175 -82238862 + Lx8 LINE L1 7315 7471 -2 5 1098 288 176 54 0 chr6 67278190 67278264 -82238773 - MER33 DNA MER1_type -75 249 172 5 1098 1014 273 66 28 chr6 67278295 67278838 -82238199 + Lx8 LINE L1 3153 3716 -2164 5 1098 1107 94 0 0 chr6 67278844 67278993 -82238044 - B2_Mm2 SINE B2 -45 150 2 5 1098 371 201 309 0 chr6 67278993 67279142 -82237895 + L1M2 LINE L1 3737 3931 -2212 5 1098 826 231 28 75 chr6 67279230 67279429 -82237608 + L1M2 LINE L1 4124 4329 -1814 5 1098 2159 120 68 68 chr6 67279429 67279823 -82237214 + ORR1B1 LTR MaLR 1 394 0 5 1098 826 231 28 75 chr6 67279823 67280011 -82237026 + L1M2 LINE L1 4330 4493 -1650 5 1098 2498 268 102 87 chr6 67280014 67280666 -82236371 + Lx8 LINE L1 5096 5757 -1716 5 1098 405 0 0 0 chr6 67280666 67280711 -82236326 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1098 2498 276 100 87 chr6 67280711 67282105 -82234932 + Lx8 LINE L1 5758 7196 -277 5 1098 1247 41 0 0 chr6 67282105 67282252 -82234785 - B1_Mus2 SINE Alu 0 147 1 5 1098 2498 276 100 87 chr6 67282252 67282459 -82234578 + Lx8 LINE L1 7197 7381 -92 5 1098 369 0 0 0 chr6 67282459 67282500 -82234537 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1098 2498 276 100 87 chr6 67282500 67282576 -82234461 + Lx8 LINE L1 7382 7457 -16 5 1098 360 193 9 17 chr6 67282631 67282747 -82234290 + (CA)n Simple_repeat Simple_repeat 2 116 0 5 1098 410 255 101 7 chr6 67284339 67284477 -82232560 + RSINE1 SINE B4 3 153 -12 6 1098 24 0 0 0 chr6 67284481 67284505 -82232532 + AT_rich Low_complexity Low_complexity 1 24 0 6 1098 450 219 0 0 chr6 67284622 67284773 -82232264 + (CA)n Simple_repeat Simple_repeat 1 151 0 6 1098 483 33 0 0 chr6 67284819 67284880 -82232157 + (CTCA)n Simple_repeat Simple_repeat 4 64 0 6 1098 205 333 0 22 chr6 67284914 67285049 -82231988 + (CATATA)n Simple_repeat Simple_repeat 5 136 0 6 1098 3049 80 2 2 chr6 67285266 67285666 -82231371 + MTB LTR MaLR 1 400 0 6 1098 187 299 59 49 chr6 67287332 67287434 -82229603 + L3 LINE CR1 1029 1131 -3358 6 1098 219 146 0 0 chr6 67287480 67287521 -82229516 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1098 225 312 17 45 chr6 67287742 67287920 -82229117 + CT-rich Low_complexity Low_complexity 1 173 0 6 1098 193 356 22 0 chr6 67288212 67288302 -82228735 - MIRb SINE MIR -168 100 9 6 1098 279 0 0 0 chr6 67288679 67288710 -82228327 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1098 220 350 58 8 chr6 67288720 67288841 -82228196 + L2 LINE L2 1818 1944 -1475 6 1098 423 0 0 0 chr6 67289345 67289392 -82227645 + (CAA)n Simple_repeat Simple_repeat 2 48 0 6 1098 407 19 19 0 chr6 67289479 67289531 -82227506 + (CAAAC)n Simple_repeat Simple_repeat 3 55 0 6 1098 229 358 26 60 chr6 67289560 67289676 -82227361 - MLT1A LTR MaLR -33 357 246 6 1098 279 0 0 0 chr6 67289858 67289889 -82227148 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 6 1098 14986 177 20 19 chr6 67289931 67291052 -82225985 + L1VL4 LINE L1 617 1749 -4137 6 1098 5747 94 9 0 chr6 67291052 67291837 -82225200 + Lx3_Mus LINE L1 6218 7009 0 6 1098 14986 152 20 24 chr6 67291837 67294196 -82222841 + L1VL4 LINE L1 1750 4098 -1788 6 1098 5396 70 3 0 chr6 67294196 67294912 -82222125 - L1_Mus1 LINE L1 0 6567 5867 6 1098 14986 152 20 24 chr6 67294912 67295067 -82221970 + L1VL4 LINE L1 4099 4246 -1640 6 1098 8137 106 65 5 chr6 67295064 67296285 -82220752 + Lx2B LINE L1 5587 6869 -131 6 1098 387 0 0 0 chr6 67296285 67296328 -82220709 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1098 8137 106 65 5 chr6 67296328 67296422 -82220615 + Lx2B LINE L1 6870 6979 -21 6 1098 359 296 10 0 chr6 67296422 67296520 -82220517 - MLT1A LTR MaLR -275 99 1 6 1098 215 79 0 26 chr6 67297419 67297458 -82219579 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 6 1098 822 151 7 41 chr6 67298708 67298853 -82218184 + B1_Mus2 SINE Alu 3 142 -5 6 1098 740 159 20 52 chr6 67299141 67299294 -82217743 + B1_Mur1 SINE Alu 2 149 0 6 1098 602 259 7 33 chr6 67299433 67299585 -82217452 + B1_Mur1 SINE Alu 1 148 -1 6 1098 1506 154 35 197 chr6 67299648 67300100 -82216937 + RLTR14 LTR ERV1 1 379 -3 6 1098 640 284 109 15 chr6 67300192 67300457 -82216580 + Lx8 LINE L1 7047 7336 -137 6 1098 225 0 0 0 chr6 67300457 67300482 -82216555 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 6 1098 932 245 14 37 chr6 67301528 67301744 -82215293 + B3 SINE B2 1 211 -5 6 1098 200 283 0 0 chr6 67302110 67302163 -82214874 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 6 1098 223 292 15 44 chr6 67302187 67302255 -82214782 - B3 SINE B2 -104 112 47 6 1098 745 277 19 0 chr6 67302453 67302608 -82214429 + B3 SINE B2 1 158 -58 6 1098 283 301 41 0 chr6 67302607 67302680 -82214357 - PB1D10 SINE Alu -35 82 7 6 1098 1208 48 0 7 chr6 67302934 67303081 -82213956 - B1_Mus1 SINE Alu -1 147 2 6 1098 21 0 0 0 chr6 67303087 67303108 -82213929 + AT_rich Low_complexity Low_complexity 1 21 0 6 1098 537 333 57 90 chr6 67303118 67303418 -82213619 + B4 SINE B4 3 292 0 6 1098 1169 68 0 0 chr6 67303548 67303694 -82213343 - B1_Mm SINE Alu 0 147 2 6 1098 569 306 14 7 chr6 67303814 67303962 -82213075 + RSINE1 SINE B4 3 151 -14 6 1098 387 0 0 0 chr6 67303966 67304009 -82213028 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1098 1040 276 10 14 chr6 67304084 67304374 -82212663 - B4A SINE B4 -3 289 1 6 1098 598 269 123 18 chr6 67304388 67304558 -82212479 + B3 SINE B2 8 195 -21 6 1098 2251 147 26 13 chr6 67304942 67305328 -82211709 + Lx4A LINE L1 6668 7058 0 6 1098 2478 81 0 0 chr6 67305577 67305923 -82211114 - L1_Mus1 LINE L1 0 6567 6246 6 1098 268 348 90 37 chr6 67306282 67306470 -82210567 + LTR86B2 LTR ERVL 257 454 -33 6 1098 1553 38 0 16 chr6 67308077 67308266 -82208771 + B2_Mm1t SINE B2 2 187 -6 6 1098 473 259 0 17 chr6 67308492 67308602 -82208435 + PB1D10 SINE Alu 1 109 -8 6 1098 378 0 0 0 chr6 67308602 67308644 -82208393 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 6 1098 473 261 156 7 chr6 67308847 67309001 -82208036 - B3 SINE B2 -2 214 38 6 1098 189 94 0 0 chr6 67309100 67309132 -82207905 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1098 21 0 0 0 chr6 67309256 67309277 -82207760 + AT_rich Low_complexity Low_complexity 1 21 0 6 1098 411 90 0 0 chr6 67310008 67310075 -82206962 + L1_Mus1 LINE L1 6497 6563 -4 6 1098 210 164 0 0 chr6 67310397 67310452 -82206585 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1098 25 31 0 0 chr6 67311208 67311240 -82205797 + AT_rich Low_complexity Low_complexity 1 32 0 6 1098 247 254 152 0 chr6 67311407 67311466 -82205571 + PB1D10 SINE Alu 1 68 -49 6 1098 23 0 0 0 chr6 67311469 67311492 -82205545 + AT_rich Low_complexity Low_complexity 1 23 0 6 1098 280 325 26 13 chr6 67311534 67311612 -82205425 - RSINE1 SINE B4 -84 81 3 6 1098 398 234 50 83 chr6 67312197 67312318 -82204719 + MTC-int LTR MaLR 659 775 -483 6 1098 5899 130 144 13 chr6 67312318 67313509 -82203528 + L1_Mur2 LINE L1 2246 3592 -2285 6 1098 5368 144 28 16 chr6 67313557 67313666 -82203371 + RMER16-int LTR ERVK 2876 2984 -2422 6 1098 3486 15 8 0 chr6 67313666 67314059 -82202978 + MTA_Mm LTR MaLR 1 396 0 6 1098 5368 144 28 16 chr6 67314059 67314934 -82202103 + RMER16-int LTR ERVK 2985 3872 -1534 6 1098 1006 86 42 24 chr6 67315405 67315572 -82201465 + Lx4A LINE L1 6550 6719 -339 6 1098 2863 233 91 19 chr6 67315571 67316928 -82200109 + Lx7 LINE L1 6143 7673 -23 6 1098 2514 135 31 29 chr6 67317366 67317816 -82199221 + RLTR11B LTR ERVK 3 453 0 6 1098 230 159 0 0 chr6 67317976 67318020 -82199017 + A-rich Low_complexity Low_complexity 2 45 0 6 1098 193 307 60 26 chr6 67318196 67318313 -82198724 + MIRb SINE MIR 122 242 -26 6 1098 1056 79 0 33 chr6 67318757 67318941 -82198096 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 6 1098 643 268 7 0 chr6 67318983 67319136 -82197901 - RSINE1 SINE B4 -10 155 2 6 1098 241 286 32 0 chr6 67319141 67319204 -82197833 - ID_B1 SINE B4 -73 151 87 6 1098 966 156 161 0 chr6 67319504 67319684 -82197353 + B3 SINE B2 1 209 -7 6 1098 397 32 48 0 chr6 67319826 67319888 -82197149 + (TTTTTG)n Simple_repeat Simple_repeat 6 70 0 6 1098 1240 48 0 0 chr6 67319888 67320034 -82197003 - B1_Mm SINE Alu 0 147 2 6 1098 1385 270 31 33 chr6 67320993 67321425 -82195612 + L1_Mur3 LINE L1 3771 4202 -1645 6 1098 486 213 113 16 chr6 67321425 67321549 -82195488 + B1_Mur1 SINE Alu 1 136 -13 6 1098 195 42 0 0 chr6 67321549 67321573 -82195464 + (CAAG)n Simple_repeat Simple_repeat 1 24 0 6 1098 477 47 0 0 chr6 67321575 67321639 -82195398 + (CAGC)n Simple_repeat Simple_repeat 2 65 0 6 1098 1242 292 61 30 chr6 67321639 67321788 -82195249 + L1M2 LINE L1 4239 4390 -1753 6 1098 561 15 0 0 chr6 67321788 67321854 -82195183 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1098 1242 292 61 30 chr6 67321854 67321938 -82195099 + L1M2 LINE L1 4391 4468 -1675 6 1098 1157 44 0 0 chr6 67321938 67322075 -82194962 + B1_Mm SINE Alu 1 137 -10 6 1098 1242 292 64 63 chr6 67322075 67323008 -82194029 + L1_Mur3 LINE L1 4428 5413 -434 6 1098 349 372 58 13 chr6 67323029 67323184 -82193853 + RSINE1 SINE B4 3 164 -1 6 1098 462 298 8 8 chr6 67323225 67323350 -82193687 + PB1 SINE Alu 1 125 -2 6 1098 201 225 21 63 chr6 67323353 67323448 -82193589 + A-rich Low_complexity Low_complexity 3 93 0 6 1098 523 280 0 0 chr6 67323476 67323594 -82193443 + B3A SINE B2 1 118 -80 6 1098 426 20 0 0 chr6 67323600 67323651 -82193386 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1098 26 30 0 0 chr6 67323651 67323684 -82193353 + AT_rich Low_complexity Low_complexity 1 33 0 6 1098 2891 42 0 24 chr6 67324330 67324699 -82192338 - L1Md_F3 LINE L1 0 6584 6225 6 1098 269 294 126 18 chr6 67324931 67325054 -82191983 + MIRb SINE MIR 128 265 -3 6 1098 327 191 29 0 chr6 67328484 67328562 -82188475 - ORR1D1 LTR MaLR -305 79 1 6 1098 426 85 0 0 chr6 67328761 67328820 -82188217 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1098 820 183 7 0 chr6 67328927 67329069 -82187968 - B1_Mur3 SINE Alu -6 143 1 6 1098 690 222 191 16 chr6 67329091 67329274 -82187763 - B3 SINE B2 0 216 2 6 1098 249 250 0 27 chr6 67329276 67329387 -82187650 + CT-rich Low_complexity Low_complexity 1 108 0 6 1098 2929 229 122 0 chr6 67329387 67330143 -82186894 - Lx6 LINE L1 -2 7458 6611 6 1098 3198 135 114 2 chr6 67330144 67330671 -82186366 + MT2B LTR ERVL 16 601 0 6 1098 6131 193 26 23 chr6 67330671 67332224 -82184813 - Lx6 LINE L1 -654 6396 4819 6 1098 243 88 0 0 chr6 67332224 67332258 -82184779 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1098 6131 181 27 29 chr6 67332258 67332518 -82184519 - Lx6 LINE L1 -1062 4818 4567 6 1098 25 0 0 0 chr6 67332522 67332547 -82184490 + AT_rich Low_complexity Low_complexity 1 25 0 6 1098 247 248 106 0 chr6 67332887 67333000 -82184037 + L1M5 LINE L1 5335 5459 -665 6 1098 1984 127 12 61 chr6 67333359 67333703 -82183334 + ORR1A4 LTR MaLR 3 329 0 6 1098 13436 171 83 22 chr6 67335365 67337698 -82179339 - Lx6 LINE L1 -1305 4575 2065 6 1098 225 0 0 0 chr6 67337698 67337723 -82179314 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1098 13436 174 61 48 chr6 67337723 67338933 -82178104 - Lx6 LINE L1 -3816 2064 892 6 1098 1571 0 6 0 chr6 67339183 67339362 -82177675 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1098 1410 56 0 0 chr6 67339365 67339545 -82177492 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1098 619 254 21 14 chr6 67339573 67339713 -82177324 + B1_Mur3 SINE Alu 9 149 0 7 1098 414 329 6 103 chr6 67339749 67339905 -82177132 - RSINE1 SINE B4 -22 143 3 7 1098 351 284 0 0 chr6 67340384 67340458 -82176579 - ID4 SINE ID -3 80 7 7 1098 201 208 27 14 chr6 67340477 67340550 -82176487 + CT-rich Low_complexity Low_complexity 3 76 0 7 1098 8618 234 107 34 chr6 67340687 67341242 -82175795 - L1_Mur3 LINE L1 -1014 4863 4362 7 1098 474 18 0 0 chr6 67341242 67341297 -82175740 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 1098 8618 234 107 34 chr6 67341297 67341918 -82175119 - L1_Mur3 LINE L1 -1516 4361 3739 7 1098 583 159 76 48 chr6 67341918 67342063 -82174974 - B1_Mur4 SINE Alu -1 149 1 7 1098 9007 171 68 19 chr6 67342063 67343526 -82173511 - L1_Mur3 LINE L1 -2139 3738 2020 7 1098 180 0 0 0 chr6 67343526 67343546 -82173491 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7 1098 9007 169 66 18 chr6 67343546 67343739 -82173298 - L1_Mur3 LINE L1 -3856 2024 1802 7 1098 264 100 0 0 chr6 67343739 67343779 -82173258 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 7 1098 9007 196 65 11 chr6 67343779 67344712 -82172325 - L1_Mur3 LINE L1 -4079 1801 816 7 1098 359 270 69 38 chr6 67344718 67344849 -82172188 - L1_Mur3 LINE L1 -7564 164 30 7 1098 2149 169 169 84 chr6 67344861 67345429 -82171608 + RLTR18 LTR ERVK 1 616 0 7 1098 567 226 88 101 chr6 67345479 67345696 -82171341 + MLT1B LTR MaLR 167 380 -10 7 1098 432 201 67 2 chr6 67345711 67345835 -82171202 + L1M5 LINE L1 5347 5479 -965 7 1098 1969 156 116 12 chr6 67346369 67346658 -82170379 + RMER1C Other Other 876 1195 -147 7 1098 1092 106 6 11 chr6 67346658 67346839 -82170198 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1098 1969 156 116 12 chr6 67346839 67346971 -82170066 + RMER1C Other Other 1196 1341 -1 7 1098 291 284 49 0 chr6 67346972 67347053 -82169984 + MER45A DNA Tip100 63 147 -31 7 1098 8553 30 0 0 chr6 67347305 67348301 -82168736 + L1Md_T LINE L1 5587 6582 0 7 1098 1256 240 127 24 chr6 67348482 67348951 -82168086 + RMER5 LTR ERV1 13 529 -5 7 1098 330 332 65 57 chr6 67349010 67349272 -82167765 - L1MC4 LINE L1 -169 7873 7610 7 1098 194 304 71 14 chr6 67349491 67349561 -82167476 + MIR SINE MIR 119 192 -70 7 1098 360 0 0 0 chr6 67350324 67350364 -82166673 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 7 1098 1268 91 23 0 chr6 67350407 67350583 -82166454 - B2_Mm2 SINE B2 -14 181 2 7 1098 508 303 39 7 chr6 67350655 67350808 -82166229 - B3A SINE B2 -13 185 28 7 1098 3454 137 24 79 chr6 67350846 67351482 -82165555 - MT2B LTR ERVL 0 601 1 7 1098 274 381 9 0 chr6 67351928 67352033 -82165004 + PB1D10 SINE Alu 1 106 -11 7 1098 470 299 79 79 chr6 67352401 67352655 -82164382 + RLTR26 LTR ERVK 164 417 -225 7 1098 680 242 0 29 chr6 67352721 67352857 -82164180 + RSINE1 SINE B4 4 135 -30 7 1098 396 0 0 0 chr6 67352858 67352902 -82164135 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1098 282 279 0 0 chr6 67353033 67353094 -82163943 + PB1 SINE Alu 1 61 -66 7 1098 312 27 0 0 chr6 67353270 67353307 -82163730 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1098 612 229 88 37 chr6 67353310 67353446 -82163591 - RSINE1 SINE B4 -22 143 1 7 1098 298 386 40 75 chr6 67353484 67353806 -82163231 - MLT1J LTR MaLR -201 311 1 7 1098 257 27 54 0 chr6 67355017 67355054 -82161983 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 7 1098 453 216 78 35 chr6 67355074 67355189 -82161848 + B3 SINE B2 97 216 0 7 1098 185 359 0 0 chr6 67355424 67355477 -82161560 - L2b LINE L2 -77 3298 3246 7 1098 252 250 16 0 chr6 67355842 67355906 -82161131 - L2 LINE L2 -1000 2419 2355 7 1098 501 331 13 26 chr6 67357748 67357900 -82159137 + RSINE1 SINE B4 3 152 -13 7 1098 19912 159 57 8 chr6 67358018 67363634 -82153403 - L1_Mus3 LINE L1 -1 6637 718 7 1098 333 327 9 17 chr6 67363990 67364105 -82152932 + PB1 SINE Alu 5 118 -9 7 1098 359 21 0 20 chr6 67364341 67364390 -82152647 + (TTA)n Simple_repeat Simple_repeat 1 48 0 7 1098 226 301 77 59 chr6 67365087 67365309 -82151728 + Lx8 LINE L1 7231 7456 -17 7 1098 279 0 0 0 chr6 67366839 67366870 -82150167 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1098 21 71 0 0 chr6 67367149 67367191 -82149846 + AT_rich Low_complexity Low_complexity 1 42 0 7 1098 581 244 184 15 chr6 67367323 67367594 -82149443 + Lx7 LINE L1 7365 7681 -15 7 1098 252 265 15 0 chr6 67368160 67368228 -82148809 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 7 1098 360 0 0 0 chr6 67368248 67368288 -82148749 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1098 1921 204 30 39 chr6 67368339 67368760 -82148277 - MTC LTR MaLR -14 407 1 7 1098 743 243 22 22 chr6 67368863 67369044 -82147993 - B3A SINE B2 -17 181 1 7 1098 1724 297 56 39 chr6 67369074 67370080 -82146957 + L1M2 LINE L1 3970 4992 -1151 7 1098 584 169 8 23 chr6 67370306 67370439 -82146598 + L1_Rod LINE L1 5072 5202 -645 7 1098 329 194 165 55 chr6 67370439 67370548 -82146489 + RLTR25B LTR ERVK 389 509 -519 7 1098 828 47 0 0 chr6 67370484 67370591 -82146446 + B1_Mus2 SINE Alu 41 147 0 7 1098 219 69 0 0 chr6 67370591 67370620 -82146417 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1098 595 212 182 30 chr6 67370620 67370785 -82146252 + B3 SINE B2 27 216 0 7 137 1148 281 67 19 chr6 67370789 67371338 -82145699 + L1_Mur3 LINE L1 5304 5833 -47 7 1099 359 344 117 12 chr6 67371368 67371530 -82145507 - B3A SINE B2 -16 182 4 7 1099 251 231 15 0 chr6 67371530 67371595 -82145442 + L1MA5 LINE L1 5866 5931 -369 7 1099 556 254 54 34 chr6 67373025 67373187 -82143850 + ID_B1 SINE B4 82 236 -56 7 1099 3899 69 16 4 chr6 67374214 67374725 -82142312 + L1Md_F2 LINE L1 6055 6571 -11 7 1099 21 89 0 0 chr6 67374771 67374827 -82142210 + AT_rich Low_complexity Low_complexity 1 56 0 7 1099 1690 189 101 13 chr6 67374876 67375261 -82141776 + MTD LTR MaLR 1 419 0 7 1099 683 156 183 0 chr6 67375311 67375497 -82141540 + MYSERV16_I-int LTR ERVK 2107 2326 0 7 1099 1839 163 152 35 chr6 67375497 67375892 -82141145 + BGLII_B LTR ERVK 1 441 0 7 1099 294 143 0 0 chr6 67376074 67376123 -82140914 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1099 1041 249 5 0 chr6 67376210 67376419 -82140618 - B3 SINE B2 -6 210 1 7 1099 432 295 18 0 chr6 67376422 67376534 -82140503 - PB1D10 SINE Alu -2 115 2 7 1099 281 315 0 92 chr6 67376440 67376559 -82140478 - ID_B1 SINE B4 -48 176 69 7 1099 387 0 0 0 chr6 67376690 67376733 -82140304 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 7 1099 761 124 5 63 chr6 67376735 67376924 -82140113 + CT-rich Low_complexity Low_complexity 1 178 0 7 1099 378 0 0 0 chr6 67376924 67376966 -82140071 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 7 1099 817 184 14 0 chr6 67376971 67377112 -82139925 - B1_Mur3 SINE Alu 0 149 7 7 1099 21 0 0 0 chr6 67377521 67377542 -82139495 + AT_rich Low_complexity Low_complexity 1 21 0 7 1099 3601 167 52 62 chr6 67377706 67378499 -82138538 + RLTR40 LTR ERVK 1 785 -32 7 1099 4908 59 11 3 chr6 67378842 67379475 -82137562 + L1Md_F2 LINE L1 5942 6579 -3 7 1099 920 286 94 11 chr6 67379601 67379866 -82137171 - B4 SINE B4 0 292 6 7 1099 228 143 0 0 chr6 67380320 67380362 -82136675 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 7 1099 1166 275 77 0 chr6 67380389 67380742 -82136295 + Lx8 LINE L1 6866 7245 -228 7 1099 270 330 25 34 chr6 67381124 67381243 -82135794 + MIRb SINE MIR 94 211 -57 7 1099 518 288 13 33 chr6 67381293 67381444 -82135593 + RSINE1 SINE B4 1 148 -17 7 1099 21 0 0 0 chr6 67382496 67382517 -82134520 + AT_rich Low_complexity Low_complexity 1 21 0 7 1099 266 164 18 0 chr6 67383112 67383167 -82133870 + CT-rich Low_complexity Low_complexity 1 56 0 7 1099 287 121 17 0 chr6 67383181 67383239 -82133798 + (TCCC)n Simple_repeat Simple_repeat 2 60 0 7 1099 524 258 68 0 chr6 67383247 67383379 -82133658 - ID_B1 SINE B4 -6 218 78 7 1099 270 288 37 12 chr6 67383382 67383463 -82133574 + L2a LINE L2 3343 3425 -1 7 1099 238 250 82 68 chr6 67383744 67383758 -82133279 + B4 SINE B4 77 91 -201 7 1099 341 261 86 145 chr6 67383758 67383819 -82133218 + B1F SINE Alu 1 67 -82 7 1099 1147 89 0 0 chr6 67383819 67383965 -82133072 + B1_Mus2 SINE Alu 2 147 0 7 1099 341 261 86 145 chr6 67383965 67384055 -82132982 + B1F SINE Alu 68 143 -6 7 1099 271 385 44 0 chr6 67384104 67384239 -82132798 + MIRb SINE MIR 82 222 -46 7 1099 186 171 0 0 chr6 67384492 67384533 -82132504 + (CATA)n Simple_repeat Simple_repeat 2 42 0 7 1099 180 0 0 0 chr6 67384534 67384554 -82132483 + (TG)n Simple_repeat Simple_repeat 2 21 0 7 1099 186 43 0 0 chr6 67386065 67386088 -82130949 + (TTTTTA)n Simple_repeat Simple_repeat 5 27 0 7 1099 26 74 0 0 chr6 67386102 67386156 -82130881 + AT_rich Low_complexity Low_complexity 1 54 0 7 1099 27 0 0 0 chr6 67386529 67386556 -82130481 + AT_rich Low_complexity Low_complexity 1 27 0 7 1099 1014 230 131 14 chr6 67388112 67388456 -82128581 - ORR1C2 LTR MaLR 0 384 1 7 1099 6567 127 22 9 chr6 67388803 67390332 -82126705 + Lx LINE L1 5108 6652 -2 7 1099 252 0 0 0 chr6 67392086 67392114 -82124923 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 1099 437 227 92 8 chr6 67392708 67392828 -82124209 - B1F1 SINE Alu -18 131 2 7 1099 193 302 139 63 chr6 67393313 67393550 -82123487 + MIRb SINE MIR 14 268 0 7 1099 22 0 0 0 chr6 67393665 67393687 -82123350 + AT_rich Low_complexity Low_complexity 1 22 0 7 1099 210 71 0 0 chr6 67393894 67393922 -82123115 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 7 1099 351 263 61 40 chr6 67393923 67394022 -82123015 - PB1D10 SINE Alu -14 103 3 7 1099 1191 323 41 21 chr6 67394587 67395146 -82121891 + Lx9 LINE L1 6746 7456 -188 7 1099 396 0 0 0 chr6 67395146 67395190 -82121847 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1099 962 356 57 23 chr6 67395190 67395277 -82121760 + Lx9 LINE L1 7330 7414 -59 7 1099 281 319 22 7 chr6 67395413 67395549 -82121488 + (TG)n Simple_repeat Simple_repeat 1 138 0 8 1099 711 291 143 17 chr6 67395565 67395796 -82121241 - B4A SINE B4 -8 284 25 8 1099 951 189 55 0 chr6 67395938 67396139 -82120898 + B3 SINE B2 1 212 -4 8 1099 408 281 8 26 chr6 67396633 67396750 -82120287 + PB1D10 SINE Alu 2 116 -1 8 1099 636 38 0 0 chr6 67396763 67396842 -82120195 + (CA)n Simple_repeat Simple_repeat 1 79 0 8 1099 570 210 278 12 chr6 67397176 67397345 -82119692 + B3 SINE B2 3 216 0 8 1099 5486 74 8 98 chr6 67397511 67398192 -82118845 + L1VL2 LINE L1 177 810 -5525 8 1099 8166 44 1 0 chr6 67398192 67399174 -82117863 + L1Md_F2 LINE L1 5588 6570 -12 8 1099 12754 86 22 24 chr6 67399174 67401369 -82115668 + L1VL2 LINE L1 811 2983 -632 8 1099 441 0 0 0 chr6 67402809 67402858 -82114179 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1099 510 277 54 7 chr6 67402859 67403008 -82114029 - ID_B1 SINE B4 -17 207 52 8 1099 788 116 50 0 chr6 67405678 67405799 -82111238 - B1_Mus1 SINE Alu -21 127 1 8 1099 338 217 72 45 chr6 67405700 67405811 -82111226 - B4A SINE B4 -98 194 81 8 1099 1418 206 90 22 chr6 67405962 67406284 -82110753 - ORR1A1 LTR MaLR 0 346 3 8 1099 22 0 0 0 chr6 67406775 67406797 -82110240 + AT_rich Low_complexity Low_complexity 1 22 0 8 1099 480 170 89 0 chr6 67407624 67407736 -82109301 + ORR1A2 LTR MaLR 1 122 -205 8 1099 255 332 84 59 chr6 67408533 67408735 -82108302 + RMER5 LTR ERV1 48 254 -280 8 1099 332 302 74 61 chr6 67409195 67409343 -82107694 + MIRc SINE MIR 75 224 -44 8 1099 1005 232 8 21 chr6 67409547 67409785 -82107252 + RMER15 LTR ERVL 297 531 -44 8 1099 263 26 0 49 chr6 67409785 67409826 -82107211 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 8 1099 578 93 59 13 chr6 67409891 67410044 -82106993 + (TCTA)n Simple_repeat Simple_repeat 2 161 0 8 1099 826 174 40 7 chr6 67410464 67410614 -82106423 - RMER5 LTR ERV1 -362 172 18 8 1099 180 0 0 0 chr6 67410726 67410746 -82106291 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 8 1099 25 31 0 0 chr6 67410916 67410948 -82106089 + AT_rich Low_complexity Low_complexity 1 32 0 8 1099 1711 201 51 24 chr6 67411362 67411734 -82105303 + Lx5 LINE L1 6480 6861 -189 8 1099 638 266 5 37 chr6 67411800 67411991 -82105046 + Lx5 LINE L1 6865 7049 -1 8 1099 40 49 0 0 chr6 67412156 67412217 -82104820 + AT_rich Low_complexity Low_complexity 1 61 0 8 1099 22 0 0 0 chr6 67412327 67412349 -82104688 + AT_rich Low_complexity Low_complexity 1 22 0 8 1099 30 45 0 0 chr6 67412664 67412708 -82104329 + AT_rich Low_complexity Low_complexity 1 44 0 8 1099 189 74 0 0 chr6 67412910 67412937 -82104100 + (CAA)n Simple_repeat Simple_repeat 2 28 0 8 1099 762 119 0 0 chr6 67413680 67413814 -82103223 + (ATTG)n Simple_repeat Simple_repeat 1 134 0 8 1099 1496 196 78 91 chr6 67413814 67414264 -82102773 + RMER5 LTR ERV1 58 501 -33 8 1099 295 341 117 58 chr6 67414334 67414471 -82102566 + RSINE1 SINE B4 4 148 -17 8 1099 183 42 0 0 chr6 67414499 67414523 -82102514 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 8 1099 1261 229 124 21 chr6 67418512 67418851 -82098186 + ORR1D1 LTR MaLR 1 374 0 8 1099 528 240 10 0 chr6 67419040 67419144 -82097893 - B3A SINE B2 -93 105 1 8 1099 1283 237 68 107 chr6 67419751 67420105 -82096932 - ORR1D2 LTR MaLR -30 340 1 8 1099 301 275 0 0 chr6 67420268 67420337 -82096700 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 8 1099 523 98 403 47 chr6 67420391 67420520 -82096517 + B2_Mm2 SINE B2 3 177 -18 8 1099 666 37 0 0 chr6 67420527 67420608 -82096429 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 1099 489 34 0 0 chr6 67420608 67420666 -82096371 + (TA)n Simple_repeat Simple_repeat 1 59 0 8 1099 195 273 55 0 chr6 67421306 67421361 -82095676 + MER5A DNA MER1_type 7 64 -125 8 1099 768 22 0 0 chr6 67421773 67421863 -82095174 + (GA)n Simple_repeat Simple_repeat 1 90 0 8 1099 1253 188 36 47 chr6 67422234 67422451 -82094586 + RMER10A LTR ERVL 1 215 -227 8 1099 1704 150 20 121 chr6 67422451 67422891 -82094146 - RMER10B LTR ERVL -2 396 1 8 1099 1253 188 36 47 chr6 67422891 67422974 -82094063 + RMER10A LTR ERVL 216 298 -144 8 1099 520 267 50 55 chr6 67422962 67423200 -82093837 + RMER17C LTR ERVK 77 313 -97 8 1099 183 42 0 0 chr6 67423956 67423980 -82093057 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1099 359 273 34 33 chr6 67424089 67424131 -82092906 - B4 SINE B4 -92 200 86 8 1099 478 222 0 0 chr6 67424131 67424212 -82092825 - B1_Mur3 SINE Alu -68 81 1 8 1099 515 306 87 5 chr6 67424212 67424419 -82092618 - ID_B1 SINE B4 0 224 1 8 1099 337 349 39 8 chr6 67425138 67425268 -82091769 + MIRb SINE MIR 20 153 -115 8 1099 334 220 0 0 chr6 67425433 67425492 -82091545 - PB1D10 SINE Alu -29 88 30 8 1099 233 265 0 39 chr6 67425875 67425926 -82091111 + RSINE1 SINE B4 10 58 -107 8 1099 481 283 8 23 chr6 67426233 67426363 -82090674 - RSINE1 SINE B4 -36 129 2 8 1099 1192 74 0 0 chr6 67427078 67427226 -82089811 + B1_Mus1 SINE Alu 1 148 0 8 1099 305 330 100 36 chr6 67427320 67427430 -82089607 - B3 SINE B2 -99 117 1 8 1099 567 363 94 13 chr6 67427900 67428207 -82088830 + MLT1A0 LTR MaLR 34 365 0 8 1099 349 259 14 75 chr6 67429314 67429460 -82087577 - HAL1-3A_ME LINE L1 -746 2112 1976 8 1099 240 324 26 51 chr6 67429482 67429560 -82087477 - B4A SINE B4 0 292 217 8 1099 737 264 5 30 chr6 67429566 67429769 -82087268 - B3A SINE B2 0 198 1 8 1099 1093 244 9 0 chr6 67429819 67430036 -82087001 - B4A SINE B4 -73 219 1 8 1099 374 189 96 10 chr6 67430351 67430464 -82086573 + L1MB1 LINE L1 5882 6001 -172 8 1099 708 300 57 45 chr6 67431145 67431410 -82085627 + B4A SINE B4 2 269 -23 8 1099 234 0 0 0 chr6 67431410 67431436 -82085601 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 1099 216 0 0 0 chr6 67431436 67431459 -82085578 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1099 216 0 0 0 chr6 67431584 67431608 -82085429 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1099 1036 64 43 0 chr6 67431608 67431749 -82085288 - B1_Mus1 SINE Alu 0 148 2 8 1099 1109 72 0 0 chr6 67432273 67432411 -82084626 + B1_Mus2 SINE Alu 1 138 -9 8 1099 261 0 0 0 chr6 67432411 67432440 -82084597 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1099 26 74 0 0 chr6 67432866 67432920 -82084117 + AT_rich Low_complexity Low_complexity 1 54 0 8 1099 905 288 62 29 chr6 67434617 67434870 -82082167 + B4 SINE B4 9 275 -17 8 1099 180 111 0 0 chr6 67434870 67434897 -82082140 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1099 905 288 62 29 chr6 67434897 67434918 -82082119 + B4 SINE B4 276 292 0 8 1099 439 254 200 24 chr6 67435134 67435259 -82081778 - B1_Mur1 SINE Alu -2 147 1 8 1099 319 326 16 1 chr6 67435603 67435697 -82081340 - PB1D10 SINE Alu -52 97 1 8 1099 336 221 21 10 chr6 67435777 67435873 -82081164 + Charlie8 DNA MER1_type 80 176 -2252 8 1099 23 0 0 0 chr6 67437025 67437048 -82079989 + AT_rich Low_complexity Low_complexity 1 23 0 8 1099 1408 156 63 8 chr6 67437505 67437744 -82079293 + RLTR25B LTR ERVK 1 252 -776 8 1099 5064 9 0 0 chr6 67437783 67438345 -82078692 - L1Md_T LINE L1 0 6582 6021 8 1099 452 238 99 0 chr6 67438423 67438524 -82078513 + RSINE1 SINE B4 38 148 -17 8 1099 406 319 59 0 chr6 67438591 67438726 -82078311 + B1F SINE Alu 5 147 -2 8 1099 415 280 8 0 chr6 67439106 67439224 -82077813 - PB1D7 SINE Alu -1 119 1 8 1099 483 319 14 14 chr6 67439334 67439477 -82077560 - B1F1 SINE Alu -6 143 1 8 1099 594 0 0 0 chr6 67439959 67440025 -82077012 + (GA)n Simple_repeat Simple_repeat 2 67 0 8 1099 484 240 37 28 chr6 67442069 67442176 -82074861 + B1_Mus1 SINE Alu 1 108 -40 8 1099 2173 151 11 8 chr6 67442182 67442535 -82074502 + ORR1B1 LTR MaLR 41 394 0 8 1099 2840 63 58 0 chr6 67443206 67443584 -82073453 + MTB LTR MaLR 1 400 0 8 1099 1179 229 64 35 chr6 67443589 67443901 -82073136 + ORR1D1 LTR MaLR 1 321 -53 8 1099 212 200 0 0 chr6 67444064 67444104 -82072933 + B4A SINE B4 2 41 -251 8 1099 25 99 0 0 chr6 67444205 67444286 -82072751 + AT_rich Low_complexity Low_complexity 1 81 0 8 1099 302 276 0 0 chr6 67444399 67444475 -82072562 + B3A SINE B2 5 80 -118 8 1099 36173 35 0 0 chr6 67444607 67450050 -82066987 + L1Md_T LINE L1 66 5589 -297 8 1099 9123 4 3 0 chr6 67450050 67451043 -82065994 + L1Md_T LINE L1 5590 6585 0 8 1099 330 26 0 0 chr6 67451057 67451096 -82065941 + (A)n Simple_repeat Simple_repeat 1 39 0 8 1099 405 297 0 38 chr6 67451302 67451407 -82065630 + PB1D10 SINE Alu 5 105 -12 8 1099 291 71 0 0 chr6 67451422 67451464 -82065573 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 8 1099 38720 30 0 1 chr6 67452045 67458699 -82058338 - L1Md_T LINE L1 0 6585 1 8 1099 985 279 69 5 chr6 67459243 67459613 -82057424 + L1MC2 LINE L1 5536 5941 -237 8 1099 2084 204 40 14 chr6 67459687 67460256 -82056781 - Lx4B LINE L1 -17 7041 6375 8 1099 593 266 87 5 chr6 67460259 67460444 -82056593 + L1MC2 LINE L1 6018 6217 -116 8 1099 299 219 27 58 chr6 67461045 67461152 -82055885 + PB1D10 SINE Alu 14 115 -2 8 1099 1330 97 16 16 chr6 67461157 67461345 -82055692 + B2_Mm2 SINE B2 2 189 -6 8 1099 204 228 0 0 chr6 67461640 67461697 -82055340 + CT-rich Low_complexity Low_complexity 2 58 0 8 1099 605 196 109 27 chr6 67461784 67461931 -82055106 - Lx4B LINE L1 0 7058 6900 8 1099 22 0 0 0 chr6 67462068 67462090 -82054947 + AT_rich Low_complexity Low_complexity 1 22 0 8 1099 270 317 19 38 chr6 67462180 67462285 -82054752 - RSINE1 SINE B4 -61 104 2 9 1099 219 299 0 16 chr6 67462583 67462659 -82054378 + CT-rich Low_complexity Low_complexity 1 74 0 9 1099 632 290 11 0 chr6 67462879 67463055 -82053982 + B3A SINE B2 3 180 -18 9 1099 1680 184 18 99 chr6 67463058 67463443 -82053594 + MT2A LTR ERVL 3 356 -177 9 1099 182 0 105 0 chr6 67463620 67463658 -82053379 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 9 1099 945 162 115 0 chr6 67463704 67463895 -82053142 - Lx2 LINE L1 0 6997 6785 9 1099 1933 94 8 0 chr6 67463893 67464159 -82052878 - Lx2 LINE L1 -352 6645 6378 9 1099 435 240 25 55 chr6 67464159 67464185 -82052852 + MT2A LTR ERVL 376 401 -132 9 1099 3795 99 21 26 chr6 67464185 67464755 -82052282 + RMER2 LTR ERV1 1 567 0 9 1099 435 240 25 55 chr6 67464755 67464891 -82052146 + MT2A LTR ERVL 402 533 0 9 1099 343 273 35 43 chr6 67465198 67465313 -82051724 - B1F SINE Alu 0 149 36 9 1099 287 243 0 14 chr6 67465562 67465633 -82051404 + PB1 SINE Alu 55 124 -3 9 1099 180 248 30 0 chr6 67465701 67465802 -82051235 + GA-rich Low_complexity Low_complexity 1 104 0 9 1099 596 317 43 30 chr6 67466049 67466283 -82050754 + MTC LTR MaLR 18 254 -167 9 1099 443 382 103 36 chr6 67466264 67466652 -82050385 - LTR16B LTR ERVL -6 457 44 9 1099 670 281 52 38 chr6 67466732 67466943 -82050094 + B3 SINE B2 1 214 -2 9 1099 26 30 0 0 chr6 67466949 67466982 -82050055 + AT_rich Low_complexity Low_complexity 1 33 0 9 1099 874 274 23 49 chr6 67467061 67467368 -82049669 + RMER15 LTR ERVL 277 575 0 9 1099 6731 75 38 7 chr6 67467856 67468754 -82048283 - L1_Mus3 LINE L1 -4 6634 5709 9 1099 473 271 107 46 chr6 67468826 67469089 -82047948 + MLT1A0 LTR MaLR 87 365 0 9 1099 10126 52 3 1 chr6 67470139 67471705 -82045332 - L1Md_F2 LINE L1 0 6582 5016 9 1099 2466 52 3 6 chr6 67471705 67472017 -82045020 + L1Md_F2 LINE L1 6260 6570 -12 9 1099 10126 61 6 2 chr6 67472017 67472423 -82044614 - L1Md_F2 LINE L1 -868 5015 4606 9 1099 238 172 86 0 chr6 67472825 67472883 -82044154 + RMER4A LTR ERVK 17 79 -387 9 1099 653 320 77 43 chr6 67474421 67474656 -82042381 - B4 SINE B4 0 292 50 9 1099 238 31 0 0 chr6 67474660 67474692 -82042345 + Lx5 LINE L1 7019 7050 0 9 1099 1129 174 6 0 chr6 67474699 67474877 -82042160 - Lx5 LINE L1 -467 6583 6405 9 1099 1876 212 112 14 chr6 67474866 67475287 -82041750 + Lx5 LINE L1 5961 6422 -628 9 1099 421 98 0 0 chr6 67475291 67475352 -82041685 - URR1B DNA MER1_type -3 222 162 9 1099 492 295 59 55 chr6 67475369 67475588 -82041449 - Lx7 LINE L1 -1673 6023 5804 9 1099 1868 193 33 8 chr6 67475589 67475949 -82041088 - MTC LTR MaLR 0 421 53 9 1099 668 257 20 0 chr6 67475949 67476101 -82040936 - Lx7 LINE L1 -1916 5780 5626 9 1099 1135 7 65 7 chr6 67476111 67476250 -82040787 + B1_Mus1 SINE Alu 1 147 -1 9 1099 188 61 0 57 chr6 67476251 67476286 -82040751 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 9 1099 500 272 7 13 chr6 67476746 67476895 -82040142 - Lx7 LINE L1 -236 5644 5497 9 1099 281 287 181 32 chr6 67476919 67477196 -82039841 - L1_Rod LINE L1 -3673 2174 1857 9 1099 349 289 172 12 chr6 67477202 67477633 -82039404 - L1_Mur3 LINE L1 -4140 1740 1241 9 1099 207 200 0 0 chr6 67477652 67477692 -82039345 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 9 1099 306 343 10 0 chr6 67477694 67477796 -82039241 - B3A SINE B2 -95 103 1 9 1099 252 212 67 57 chr6 67477800 67477905 -82039132 - L1_Rod LINE L1 -6344 828 723 9 1099 7751 78 9 4 chr6 67478171 67479656 -82037381 + L1_Mus2 LINE L1 5069 6566 0 9 1099 345 200 67 0 chr6 67480392 67480467 -82036570 - MTE-int LTR MaLR -853 727 648 9 1099 714 167 103 0 chr6 67480950 67481076 -82035961 + B1_Mur1 SINE Alu 4 142 -7 9 1099 192 309 61 20 chr6 67486878 67486977 -82030060 - MIRc SINE MIR -71 197 95 9 1099 468 0 0 0 chr6 67487126 67487178 -82029859 + (TC)n Simple_repeat Simple_repeat 2 53 0 9 1099 360 0 0 0 chr6 67487504 67487544 -82029493 + (A)n Simple_repeat Simple_repeat 1 40 0 9 1099 453 266 11 28 chr6 67488649 67488831 -82028206 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 9 1099 390 218 5 101 chr6 67488868 67489067 -82027970 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 9 1099 366 259 35 23 chr6 67489257 67489431 -82027606 + (TTAGGG)n Simple_repeat Simple_repeat 4 179 0 9 1099 344 316 23 11 chr6 67489553 67489729 -82027308 + (TTAGGG)n Simple_repeat Simple_repeat 2 179 0 9 1099 216 277 59 0 chr6 67489861 67489962 -82027075 + (TTAGGG)n Simple_repeat Simple_repeat 1 107 0 9 1099 323 341 6 11 chr6 67489993 67490171 -82026866 + (TTAGGG)n Simple_repeat Simple_repeat 4 180 0 9 1099 1434 112 148 67 chr6 67490450 67490747 -82026290 - ORR1A4 LTR MaLR -8 321 1 9 1099 326 312 19 6 chr6 67490807 67490965 -82026072 + (TTAGGG)n Simple_repeat Simple_repeat 3 162 0 9 1099 7197 76 7 3 chr6 67491117 67492059 -82024978 + L1_Mus3 LINE L1 5693 6638 0 9 1099 215 367 0 0 chr6 67492059 67492179 -82024858 + (TTAGGG)n Simple_repeat Simple_repeat 5 124 0 9 1099 256 291 22 10 chr6 67492250 67492569 -82024468 + (TTAGGG)n Simple_repeat Simple_repeat 1 323 0 9 1099 243 336 9 0 chr6 67492686 67492905 -82024132 + (TTAGGG)n Simple_repeat Simple_repeat 1 221 0 9 1099 379 298 7 7 chr6 67492961 67493103 -82023934 + (TTAGGG)n Simple_repeat Simple_repeat 3 144 0 9 1099 226 294 34 45 chr6 67493184 67493314 -82023723 + (TTAGGG)n Simple_repeat Simple_repeat 4 136 0 9 1099 1273 109 5 5 chr6 67493314 67493499 -82023538 + B2_Mm1a SINE B2 1 185 -8 9 1099 226 294 34 45 chr6 67493499 67493546 -82023491 + (TTAGGG)n Simple_repeat Simple_repeat 3 45 0 9 1099 414 290 11 17 chr6 67493664 67493843 -82023194 + (TTAGGG)n Simple_repeat Simple_repeat 3 180 0 9 1099 637 66 0 21 chr6 67494013 67494106 -82022931 - B1_Mm SINE Alu 0 147 57 9 1099 186 268 0 0 chr6 67494122 67494234 -82022803 + (TTAGGG)n Simple_repeat Simple_repeat 3 114 0 9 1099 342 322 12 0 chr6 67495033 67495204 -82021833 + (TTAGGG)n Simple_repeat Simple_repeat 2 174 0 9 1099 1191 68 0 0 chr6 67495911 67496058 -82020979 + B1_Mus1 SINE Alu 2 148 0 9 1099 237 250 156 13 chr6 67496342 67496419 -82020618 + PB1D10 SINE Alu 21 108 -9 9 1099 3079 52 2 32 chr6 67496890 67497290 -82019747 + RLTR10 LTR ERVK 1 388 -2 9 1099 298 333 0 0 chr6 67497754 67497847 -82019190 - L1ME3A LINE L1 -86 6087 5995 9 1099 1230 93 60 0 chr6 67497877 67498060 -82018977 - B2_Mm2 SINE B2 0 195 2 9 1099 817 258 14 9 chr6 67498822 67499037 -82018000 - B3 SINE B2 0 216 1 9 1099 471 221 48 0 chr6 67499180 67499284 -82017753 + B4A SINE B4 167 275 -17 9 1099 2319 214 8 26 chr6 67500246 67500740 -82016297 + RLTR21 LTR ERVK 29 513 -1059 1 1099 483 18 0 0 chr6 67500746 67500802 -82016235 + (TTC)n Simple_repeat Simple_repeat 1 56 0 2 1099 1625 130 68 3 chr6 67500804 67501098 -82015939 + MTC LTR MaLR 109 421 0 3 1099 895 262 14 9 chr6 67501409 67501621 -82015416 - B3 SINE B2 -3 213 1 4 1099 490 233 14 122 chr6 67501626 67501773 -82015264 - B1_Mur1 SINE Alu -8 141 11 5 137 3555 215 80 14 chr6 67501773 67502803 -82014234 + RMER1B Other Other 1 1063 -3 6 1100 681 289 52 0 chr6 67502850 67503023 -82014014 - ID_B1 SINE B4 -42 182 1 7 1100 514 261 84 0 chr6 67503395 67503514 -82013523 + B3A SINE B2 3 131 -67 8 1100 593 306 43 11 chr6 67503612 67503797 -82013240 + ID_B1 SINE B4 1 191 -33 9 1100 722 120 0 15 chr6 67503814 67503949 -82013088 + (GAAA)n Simple_repeat Simple_repeat 3 135 0 1 1100 1246 228 4 4 chr6 67503951 67504206 -82012831 + Lx4B LINE L1 6372 6626 -432 1 1100 234 0 0 0 chr6 67504546 67504572 -82012465 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1100 1343 131 68 0 chr6 67504628 67504850 -82012187 + L1_Mur2 LINE L1 2074 2310 -3567 1 1100 2995 195 36 10 chr6 67506751 67507512 -82009525 - L1_Mus1 LINE L1 -843 6215 5432 1 1100 257 310 87 27 chr6 67507523 67507672 -82009365 - RMER13B LTR ERVK -9 899 742 1 1100 1670 214 68 81 chr6 67507733 67508301 -82008736 - RMER17B LTR ERVK -168 790 230 1 1100 2500 149 49 13 chr6 67508301 67508770 -82008267 - RLTR26 LTR ERVK 0 642 157 1 1100 7627 165 117 29 chr6 67509163 67511406 -82005631 - L1_Mus1 LINE L1 0 6567 2571 1 1100 6105 52 0 5 chr6 67511406 67512166 -82004871 - L1Md_F3 LINE L1 0 6584 5829 1 1100 8374 74 5 0 chr6 67512166 67513309 -82003728 - L1_Mus1 LINE L1 -3307 2570 1426 1 1100 818 295 76 20 chr6 67513728 67513799 -82003238 + Lx6 LINE L1 5960 6043 -1417 1 1100 522 0 0 0 chr6 67513799 67513857 -82003180 + (CAGG)n Simple_repeat Simple_repeat 1 58 0 2 1100 818 295 76 20 chr6 67513857 67514089 -82002948 + Lx6 LINE L1 6044 6280 -1180 1 1100 997 314 155 9 chr6 67514084 67514650 -82002387 + Lx6 LINE L1 6518 7166 -294 1 1100 201 237 0 0 chr6 67514750 67514809 -82002228 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 1100 23 68 0 0 chr6 67516719 67516763 -82000274 + AT_rich Low_complexity Low_complexity 1 44 0 2 1100 1166 263 86 21 chr6 67517686 67518153 -81998884 - RMER5 LTR ERV1 -5 529 33 2 1100 384 262 0 45 chr6 67518273 67518385 -81998652 + B3A SINE B2 2 108 -90 2 1100 755 271 20 5 chr6 67519381 67519581 -81997456 + B3 SINE B2 2 204 -12 2 1100 37 39 0 0 chr6 67520539 67520590 -81996447 + AT_rich Low_complexity Low_complexity 1 51 0 2 1100 2542 268 107 30 chr6 67520613 67521594 -81995443 - Lx6 LINE L1 -30 7430 6151 2 1100 3326 223 94 30 chr6 67521601 67522571 -81994466 - Lx6 LINE L1 -64 5813 4782 2 1100 743 251 100 51 chr6 67523050 67523361 -81993676 - MTD LTR MaLR -14 405 80 2 1100 233 339 62 9 chr6 67523326 67523439 -81993598 + RSINE1 SINE B4 27 145 -20 2 1100 351 44 0 0 chr6 67523452 67523497 -81993540 + (CATA)n Simple_repeat Simple_repeat 2 46 0 3 1100 26 30 0 0 chr6 67523641 67523674 -81993363 + AT_rich Low_complexity Low_complexity 1 33 0 3 1100 3170 179 13 30 chr6 67523814 67524418 -81992619 - Lx4B LINE L1 -128 6930 6337 3 1100 2559 34 12 0 chr6 67525351 67525678 -81991359 + IAPEY_LTR LTR ERVK 55 385 0 3 1100 2237 107 0 16 chr6 67525678 67525993 -81991044 + IAPEy-int LTR ERVK 1 310 -7203 3 1100 38801 30 1 1 chr6 67526311 67533627 -81983410 - L1Md_T LINE L1 0 6585 1 3 1100 3552 137 32 15 chr6 67533708 67534323 -81982714 + IAPEy-int LTR ERVK 433 1058 -6455 3 1100 12957 64 16 1 chr6 67534323 67535941 -81981096 + IAPEY3-int LTR ERVK 4788 6429 -1251 3 1100 38571 45 3 3 chr6 67535948 67542563 -81974474 - L1Md_T LINE L1 0 6585 1 3 1100 8738 64 2 6 chr6 67542563 67543672 -81973365 + IAPEY3-int LTR ERVK 6410 7513 0 3 1100 2475 52 15 0 chr6 67543672 67543998 -81973039 + IAPEY_LTR LTR ERVK 55 385 0 3 1100 1263 336 58 18 chr6 67544304 67544877 -81972160 - Lx8 LINE L1 -649 6824 6229 3 1100 33848 72 7 8 chr6 67544934 67550133 -81966904 + L1Md_F3 LINE L1 218 5585 -298 3 1100 8097 51 1 3 chr6 67550134 67551133 -81965904 + L1Md_F3 LINE L1 5587 6583 -1 3 1100 777 282 118 18 chr6 67552014 67552346 -81964691 - ORR1D1 LTR MaLR -1 373 9 4 1100 263 294 110 0 chr6 67552529 67552638 -81964399 + RMER15-int LTR ERVL 991 1111 -3888 4 1100 4070 195 61 4 chr6 67552677 67553511 -81963526 - Lx4B LINE L1 -1 7057 6176 4 1100 19085 6 0 0 chr6 67553533 67556339 -81960698 - L1Md_A LINE L1 0 6582 3777 4 1100 2889 187 11 13 chr6 67556362 67557051 -81959986 - Lx4B LINE L1 -912 6146 5453 4 1100 1816 228 101 104 chr6 67557051 67557664 -81959373 - RMER19C LTR ERVK 0 611 1 4 1100 2889 185 8 15 chr6 67557664 67557835 -81959202 - Lx4B LINE L1 -425 5452 5283 4 1100 2156 147 13 36 chr6 67557849 67558238 -81958799 - Lx3_Mus LINE L1 -8 7001 6622 4 1100 1120 178 0 51 chr6 67558239 67558476 -81958561 + Lx LINE L1 6430 6654 0 4 1100 362 86 35 0 chr6 67558694 67558752 -81958285 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 4 1100 22 35 0 0 chr6 67559208 67559237 -81957800 + AT_rich Low_complexity Low_complexity 1 29 0 4 1100 22 35 0 0 chr6 67560025 67560054 -81956983 + AT_rich Low_complexity Low_complexity 1 29 0 4 1100 35936 43 4 3 chr6 67561058 67567257 -81949780 - L1Md_T LINE L1 0 6585 281 5 1100 1270 41 12 0 chr6 67569260 67569429 -81947608 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 5 1100 36110 31 0 0 chr6 67569917 67576341 -81940696 - L1Md_T LINE L1 0 6585 65 5 1100 6109 147 19 8 chr6 67576420 67578128 -81938909 + L1VL4 LINE L1 227 1953 -1606 5 1100 17387 25 0 1 chr6 67578132 67580948 -81936089 - L1Md_T LINE L1 0 6582 3770 5 1100 3019 157 13 52 chr6 67580944 67581327 -81935710 + L1_Mm LINE L1 3322 3712 -2171 5 1100 1229 54 0 0 chr6 67581327 67581474 -81935563 + B1_Mus2 SINE Alu 1 147 0 5 1100 3019 157 13 52 chr6 67581474 67581721 -81935316 + L1_Mm LINE L1 3713 3927 -1956 5 1100 540 345 98 52 chr6 67582224 67582856 -81934181 - L1MD2 LINE L1 -445 5914 5254 5 1100 1211 56 17 11 chr6 67584225 67584405 -81932632 + L1_Mus3 LINE L1 6458 6638 0 5 1100 750 23 0 0 chr6 67584898 67584986 -81932051 + (TTCCC)n Simple_repeat Simple_repeat 3 90 0 5 1100 294 151 0 0 chr6 67584986 67585059 -81931978 + T-rich Low_complexity Low_complexity 1 73 0 6 1100 1103 83 21 0 chr6 67585060 67585205 -81931832 - B1_Mus1 SINE Alu 0 148 1 6 1100 205 356 9 19 chr6 67585220 67585326 -81931711 + (TATG)n Simple_repeat Simple_repeat 3 107 0 6 1100 276 286 26 0 chr6 67585234 67585311 -81931726 + (CATA)n Simple_repeat Simple_repeat 1 79 0 6 1100 21 0 0 0 chr6 67586036 67586057 -81930980 + AT_rich Low_complexity Low_complexity 1 21 0 6 1100 1348 262 88 42 chr6 67586209 67586707 -81930330 - RMER5 LTR ERV1 -5 529 9 6 1100 410 303 0 10 chr6 67586794 67586894 -81930143 + B3A SINE B2 1 99 -99 6 1100 322 292 27 45 chr6 67587886 67587997 -81929040 + MTE-int LTR MaLR 831 939 -641 6 1100 490 194 0 30 chr6 67587998 67588131 -81928906 + (TATATG)n Simple_repeat Simple_repeat 3 131 0 6 1100 345 364 88 40 chr6 67588252 67588524 -81928513 + MTE-int LTR MaLR 1078 1362 -218 6 1100 195 100 0 0 chr6 67588526 67588556 -81928481 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1100 284 344 42 64 chr6 67588648 67588884 -81928153 + MTE-int LTR MaLR 1340 1570 -10 6 1100 21 0 0 0 chr6 67589441 67589462 -81927575 + AT_rich Low_complexity Low_complexity 1 21 0 7 1100 491 92 0 0 chr6 67589652 67589717 -81927320 + L1_Mus4 LINE L1 6429 6493 -143 7 1100 1038 77 7 7 chr6 67589807 67589946 -81927091 + B1_Mus1 SINE Alu 1 140 -8 7 1100 288 53 0 0 chr6 67589946 67589984 -81927053 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 7 1100 723 269 40 15 chr6 67590184 67590384 -81926653 + B3 SINE B2 2 206 -10 7 1100 2024 286 103 49 chr6 67591729 67592725 -81924312 - Lx6 LINE L1 -27 7433 6123 7 1100 3144 234 90 8 chr6 67592739 67593290 -81923747 - Lx6 LINE L1 -63 5817 5231 7 1100 186 43 0 0 chr6 67593290 67593313 -81923724 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1100 3144 234 90 8 chr6 67593313 67593727 -81923310 - Lx6 LINE L1 -650 5230 4774 7 1100 943 268 70 30 chr6 67594185 67594485 -81922552 - MTD LTR MaLR -14 405 94 7 1100 417 39 0 0 chr6 67594591 67594642 -81922395 + (CATA)n Simple_repeat Simple_repeat 2 52 0 7 1100 306 125 88 18 chr6 67594642 67594699 -81922338 - L1_Mur1 LINE L1 -319 5558 5498 7 1100 3609 105 53 6 chr6 67594699 67595246 -81921791 + L1_Mus3 LINE L1 6066 6638 0 8 1100 25 75 0 0 chr6 67595397 67595450 -81921587 + AT_rich Low_complexity Low_complexity 1 53 0 8 1100 458 138 8 0 chr6 67595450 67595549 -81921488 + L1_Mur1 LINE L1 2846 2956 -2930 8 1100 2833 171 8 15 chr6 67595550 67596083 -81920954 + Lx2B LINE L1 6470 6998 -2 8 1100 27 0 0 0 chr6 67596993 67597020 -81920017 + AT_rich Low_complexity Low_complexity 1 27 0 8 1100 760 298 51 74 chr6 67598228 67598818 -81918219 - L1MC1 LINE L1 -97 6236 5674 8 1100 1102 76 7 0 chr6 67598818 67598962 -81918075 - B1_Mus2 SINE Alu 0 147 3 8 1100 760 298 51 74 chr6 67598962 67599102 -81917935 - L1MC1 LINE L1 -660 5673 5523 8 1100 338 102 0 0 chr6 67599102 67599161 -81917876 + L1_Mus2 LINE L1 6507 6565 -1 8 1100 312 365 67 9 chr6 67599174 67599384 -81917653 - L1MC1 LINE L1 -797 5536 5315 8 1100 3241 77 5 2 chr6 67599563 67599992 -81917045 + L1_Mus2 LINE L1 6137 6566 0 8 1100 6540 101 4 19 chr6 67601374 67603009 -81914028 + L1Md_A LINE L1 591 2196 -3687 8 1100 2823 19 3 0 chr6 67603009 67603330 -81913707 - RLTRETN_Mm LTR ERVK 0 322 1 9 1100 3140 11 8 0 chr6 67603330 67603704 -81913333 - MMETn-int LTR ERVK 0 4844 4468 9 1100 17773 23 1 4 chr6 67603697 67605882 -81911155 - MMETn-int LTR ERVK -2657 2187 10 9 1100 2815 19 3 0 chr6 67605890 67606211 -81910826 - RLTRETN_Mm LTR ERVK 0 322 1 9 1100 22001 61 19 97 chr6 67606211 67609174 -81907863 + L1Md_A LINE L1 2191 4971 -912 8 1100 246 167 46 77 chr6 67609174 67609239 -81907798 - RMER20A LTR ERVK -268 248 186 9 1100 22001 61 19 97 chr6 67609239 67609892 -81907145 + L1Md_A LINE L1 4972 5585 -298 8 1100 7879 53 3 1 chr6 67609893 67610883 -81906154 + L1Md_F2 LINE L1 5587 6578 -4 9 1100 5323 82 0 8 chr6 67611155 67611872 -81905165 + L1Md_F2 LINE L1 4316 5026 -857 9 1100 2435 53 7 0 chr6 67611858 67612157 -81904880 + L1Md_F2 LINE L1 5285 5585 -298 9 1100 7890 82 2 2 chr6 67612158 67613154 -81903883 + L1Md_F2 LINE L1 5587 6582 0 9 1100 2375 91 6 3 chr6 67613231 67613562 -81903475 + IAPEY_LTR LTR ERVK 54 385 0 9 1100 43887 70 2 5 chr6 67613562 67619137 -81897900 + IAPEy-int LTR ERVK 1 5563 -1950 9 1100 3736 130 16 62 chr6 67619152 67620004 -81897033 - MMETn-int LTR ERVK -4387 3019 1721 9 1100 7219 103 23 69 chr6 67620002 67621218 -81895819 - MMETn-int LTR ERVK -3675 1169 10 9 1100 1106 200 31 114 chr6 67621226 67621576 -81895461 - RLTRETN_Mm LTR ERVK -1 321 1 9 1100 3826 79 6 4 chr6 67621632 67622178 -81894859 + L1VL2 LINE L1 642 1188 -2427 9 1100 2037 102 156 54 chr6 67622178 67622551 -81894486 + RLTR10A LTR ERVK 1 411 0 9 1100 3826 75 9 7 chr6 67622551 67622819 -81894218 + L1VL2 LINE L1 1189 1457 -2158 9 1100 22 56 0 0 chr6 67622937 67622973 -81894064 + AT_rich Low_complexity Low_complexity 1 36 0 9 1100 1000 225 28 5 chr6 67623364 67623578 -81893459 - MTEb LTR MaLR 0 379 161 9 1100 1020 101 0 0 chr6 67623578 67623756 -81893281 + (GA)n Simple_repeat Simple_repeat 1 178 0 1 1100 414 331 0 8 chr6 67623844 67623969 -81893068 + RSINE1 SINE B4 11 134 -31 1 1100 216 0 0 0 chr6 67624713 67624737 -81892300 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 1 1100 460 301 163 92 chr6 67624777 67625231 -81891806 + L2 LINE L2 1473 1958 -1461 1 1100 301 314 0 44 chr6 67625430 67625520 -81891517 + B1F SINE Alu 1 86 -63 1 1100 654 307 7 0 chr6 67625838 67625991 -81891046 + RSINE1 SINE B4 3 156 -9 1 1100 764 348 19 15 chr6 67626026 67626297 -81890740 + B4A SINE B4 1 272 -20 1 1100 399 41 0 0 chr6 67626351 67626400 -81890637 + (CATA)n Simple_repeat Simple_repeat 4 52 0 1 1100 194 235 118 0 chr6 67626560 67626611 -81890426 + L4 LINE RTE 706 762 -1267 1 1100 576 29 0 0 chr6 67626984 67627054 -81889983 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1100 276 348 10 78 chr6 67627379 67627572 -81889465 - MER5B DNA MER1_type -7 171 11 1 1100 225 184 0 20 chr6 67628052 67628102 -81888935 + MER46C DNA MER2_type 280 328 -10 1 1100 309 301 59 40 chr6 67628883 67628919 -81888118 + ERVL-E-int LTR ERVL 4393 4426 -1241 1 1100 1068 94 0 43 chr6 67628919 67629107 -81887930 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 1 1100 309 301 59 40 chr6 67629107 67629222 -81887815 + ERVL-E-int LTR ERVL 4427 4547 -1120 1 1100 224 281 177 32 chr6 67629424 67629582 -81887455 + L2a LINE L2 3215 3395 -31 1 1100 371 341 22 15 chr6 67629631 67629768 -81887269 - MER58B DNA MER1_type -6 335 198 1 1100 645 283 39 82 chr6 67630098 67630188 -81886849 + ID_B1 SINE B4 2 222 -2 1 1100 687 234 57 0 chr6 67630188 67630329 -81886708 + B1_Mur1 SINE Alu 1 149 0 1 1100 343 289 13 0 chr6 67630389 67630465 -81886572 - ID4 SINE ID -5 78 2 1 1100 266 0 29 0 chr6 67630618 67630652 -81886385 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1100 483 18 0 0 chr6 67631660 67631716 -81885321 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1100 297 0 0 0 chr6 67631987 67632020 -81885017 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1101 222 62 0 0 chr6 67633774 67633806 -81883231 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1101 34 0 0 0 chr6 67633806 67633840 -81883197 + AT_rich Low_complexity Low_complexity 1 34 0 1 1101 536 261 65 100 chr6 67633845 67634015 -81883022 + RSINE1 SINE B4 2 165 0 1 1101 593 90 11 0 chr6 67634046 67634135 -81882902 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 1101 726 173 0 34 chr6 67634133 67634236 -81882801 + polypurine Low_complexity Low_complexity 4 102 0 1 1101 1267 42 0 0 chr6 67634236 67634380 -81882657 + B1_Mus1 SINE Alu 5 148 0 1 1101 726 173 0 34 chr6 67634380 67634455 -81882582 + polypurine Low_complexity Low_complexity 103 176 0 1 1101 250 95 23 23 chr6 67634455 67634498 -81882539 + (GGAAA)n Simple_repeat Simple_repeat 4 46 0 1 1101 1238 158 71 33 chr6 67634872 67635304 -81881733 - RMER5 LTR ERV1 -7 527 1 1 1101 8455 33 2 3 chr6 67635667 67636961 -81880076 + L1Md_F3 LINE L1 5304 6584 0 1 1101 639 160 103 0 chr6 67637749 67637905 -81879132 - Lx2 LINE L1 0 6997 6826 1 1101 3881 54 4 14 chr6 67637918 67638425 -81878612 + LTRIS2 LTR ERV1 63 564 0 1 1101 265 191 21 0 chr6 67638427 67638474 -81878563 - Lx2 LINE L1 -185 6812 6765 1 1101 7016 139 9 13 chr6 67638460 67639851 -81877186 - Lx2 LINE L1 -349 6648 5263 1 1101 6095 93 14 17 chr6 67639859 67641478 -81875559 - L1VL4 LINE L1 -1756 1803 194 1 1101 37 0 0 0 chr6 67641516 67641553 -81875484 + AT_rich Low_complexity Low_complexity 1 37 0 1 1101 24 32 0 0 chr6 67642397 67642428 -81874609 + AT_rich Low_complexity Low_complexity 1 31 0 1 1101 233 175 0 0 chr6 67642445 67642485 -81874552 + RMER5 LTR ERV1 495 534 0 1 1101 519 17 0 0 chr6 67642514 67642574 -81874463 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1101 351 0 0 0 chr6 67642574 67642612 -81874425 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1101 256 169 15 119 chr6 67642619 67642686 -81874351 - MurSatRep1 Unknown Unknown -1844 293 234 1 1101 219 146 0 0 chr6 67642857 67642898 -81874139 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1101 1418 116 5 0 chr6 67643005 67643195 -81873842 + B2_Mm1t SINE B2 3 193 0 1 1101 23 54 0 0 chr6 67643562 67643599 -81873438 + AT_rich Low_complexity Low_complexity 1 37 0 1 1101 610 177 18 0 chr6 67643652 67643765 -81873272 - RMER1A Other Other 0 1030 916 1 1101 197 83 28 0 chr6 67643765 67643801 -81873236 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1 1101 2364 236 48 40 chr6 67643837 67644071 -81872966 - RMER1A Other Other -371 659 431 1 1101 2403 130 86 39 chr6 67644071 67644504 -81872533 + RLTR11B LTR ERVK 1 453 0 1 1101 2364 229 8 174 chr6 67644504 67645130 -81871907 - RMER1A Other Other -574 492 4 1 1101 357 102 0 0 chr6 67645700 67645759 -81871278 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 1 1101 503 201 8 0 chr6 67645794 67645928 -81871109 + (TG)n Simple_repeat Simple_repeat 1 135 0 1 1101 843 122 25 6 chr6 67646957 67647114 -81869923 + GA-rich Low_complexity Low_complexity 3 162 0 1 1101 988 217 14 19 chr6 67647288 67647499 -81869538 - Lx5 LINE L1 0 7050 6841 1 1101 364 119 51 0 chr6 67647561 67647620 -81869417 - URR1B DNA MER1_type -2 223 162 1 1101 709 71 10 10 chr6 67647620 67647720 -81869317 + MTA_Mm LTR MaLR 1 100 -296 1 1101 622 187 37 0 chr6 67647720 67647827 -81869210 - RMER5 LTR ERV1 -411 123 13 1 1101 1228 112 11 0 chr6 67648447 67648625 -81868412 + MusHAL1 LINE L1 1530 1709 -1003 1 1101 278 102 41 0 chr6 67648783 67648832 -81868205 - RMER5 LTR ERV1 0 534 484 1 1101 348 281 50 66 chr6 67649260 67649458 -81867579 + RLTR46 LTR ERVK 126 320 0 1 1101 341 148 24 0 chr6 67649515 67649578 -81867459 + MTEb LTR MaLR 5 74 -305 1 1101 3271 178 40 16 chr6 67649578 67650205 -81866832 + RLTR26 LTR ERVK 1 642 0 1 1101 752 247 124 110 chr6 67650205 67650504 -81866533 + MTEb LTR MaLR 76 379 0 1 1101 258 318 75 53 chr6 67650529 67650662 -81866375 + B1F2 SINE Alu 1 136 -13 1 1101 402 181 39 55 chr6 67650730 67650911 -81866126 + (TATAA)n Simple_repeat Simple_repeat 3 180 0 1 1101 22 56 0 0 chr6 67650943 67650979 -81866058 + AT_rich Low_complexity Low_complexity 1 36 0 1 1101 353 310 0 12 chr6 67651325 67651410 -81865627 - B4 SINE B4 -72 220 137 1 1101 215 236 55 0 chr6 67651423 67651478 -81865559 - B4 SINE B4 -230 62 5 1 1101 240 133 33 16 chr6 67651701 67651762 -81865275 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1101 218 324 40 0 chr6 67651862 67651936 -81865101 - RSINE1 SINE B4 -2 163 87 1 1101 225 369 34 101 chr6 67651974 67652122 -81864915 - B4 SINE B4 -153 139 2 1 1101 358 310 11 0 chr6 67652158 67652245 -81864792 - RSINE1 SINE B4 -24 141 54 1 1101 643 271 51 19 chr6 67652237 67652395 -81864642 + B3 SINE B2 53 215 -1 1 1101 373 248 15 133 chr6 67652462 67652597 -81864440 + B3 SINE B2 93 211 -5 1 1101 234 191 0 0 chr6 67652605 67652652 -81864385 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1101 591 51 0 0 chr6 67652653 67652732 -81864305 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1101 317 237 53 21 chr6 67653167 67653181 -81863856 + Lx6 LINE L1 6126 6140 -1320 1 1101 441 0 0 0 chr6 67653181 67653230 -81863807 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1101 317 237 53 21 chr6 67653230 67653310 -81863727 + Lx6 LINE L1 6141 6223 -1237 1 1101 2190 107 12 51 chr6 67653738 67654073 -81862964 + RLTRETN_Mm LTR ERVK 1 322 0 1 1101 295 236 161 54 chr6 67654641 67654753 -81862284 - MER5A DNA MER1_type 0 189 66 1 1101 190 314 225 17 chr6 67654831 67655009 -81862028 + MIRb SINE MIR 51 265 -3 1 1101 2314 80 59 9 chr6 67656881 67657220 -81859817 - RLTR9E LTR ERVK -53 356 1 1 1101 26 0 0 0 chr6 67657264 67657290 -81859747 + AT_rich Low_complexity Low_complexity 1 26 0 1 1101 3278 15 2 110 chr6 67657818 67658255 -81858782 - RLTR10 LTR ERVK 0 390 1 1 1101 8799 24 1 0 chr6 67658257 67659249 -81857788 - RLTR10-int LTR ERVK -3 1984 992 1 1101 380 232 62 39 chr6 67659332 67659462 -81857575 - RLTR10-int LTR ERVK -5987 1594 1462 1 1101 7416 44 12 73 chr6 67659526 67660547 -81856490 - RLTR10-int LTR ERVK -989 998 41 1 1101 3278 15 2 110 chr6 67660557 67660994 -81856043 - RLTR10 LTR ERVK 0 390 1 1 1101 200 86 0 28 chr6 67662736 67662772 -81854265 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1101 637 400 21 17 chr6 67663227 67663756 -81853281 - MTE-int LTR MaLR -239 1341 831 1 1101 224 352 0 40 chr6 67664518 67664592 -81852445 + MIR SINE MIR 35 105 -157 1 1101 183 80 0 0 chr6 67664642 67664667 -81852370 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1101 5824 149 13 6 chr6 67664673 67665619 -81851418 + RMER17B LTR ERVK 1 952 -6 1 1101 452 257 45 101 chr6 67665817 67666064 -81850973 + RMER5 LTR ERV1 1 233 -301 1 1101 479 281 98 10 chr6 67666120 67666314 -81850723 + RMER5 LTR ERV1 321 531 -3 1 1101 23 33 0 0 chr6 67666427 67666457 -81850580 + AT_rich Low_complexity Low_complexity 1 30 0 1 1101 213 188 15 45 chr6 67668004 67668071 -81848966 + A-rich Low_complexity Low_complexity 2 66 0 1 1101 2838 271 56 48 chr6 67668438 67669607 -81847430 + RLTR42-int LTR ERVK 4005 5182 -340 1 1101 3004 78 14 3 chr6 67671459 67671901 -81845136 - L1_Mus1 LINE L1 -423 6159 5716 1 1101 2780 126 2 82 chr6 67671902 67672413 -81844624 + L1Md_F2 LINE L1 6113 6582 0 1 1101 200 125 0 24 chr6 67672423 67672464 -81844573 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 1101 3657 114 3 35 chr6 67672498 67673091 -81843946 + Lx LINE L1 6078 6651 -3 1 1101 198 0 0 0 chr6 67673093 67673115 -81843922 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1101 26 0 0 0 chr6 67673115 67673141 -81843896 + AT_rich Low_complexity Low_complexity 1 26 0 1 1101 906 163 32 5 chr6 67673372 67673488 -81843549 + Lx LINE L1 6462 6576 -78 1 1101 451 29 29 14 chr6 67673488 67673557 -81843480 + (TTTTG)n Simple_repeat Simple_repeat 2 71 0 1 1101 906 163 32 5 chr6 67673557 67673625 -81843412 + Lx LINE L1 6577 6649 -5 1 1101 746 11 11 0 chr6 67673837 67673928 -81843109 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 1 1101 240 244 21 75 chr6 67674069 67674162 -81842875 + L1MB8 LINE L1 5844 5931 -247 1 1101 201 74 0 0 chr6 67674173 67674200 -81842837 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1101 22 35 0 0 chr6 67674377 67674406 -81842631 + AT_rich Low_complexity Low_complexity 1 29 0 2 1101 643 90 41 0 chr6 67678242 67678364 -81838673 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 2 1101 14168 135 29 13 chr6 67678784 67681183 -81835854 + L1VL4 LINE L1 587 2992 -922 2 1101 216 0 0 0 chr6 67681183 67681207 -81835830 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1101 14168 132 35 7 chr6 67681207 67682091 -81834946 + L1VL4 LINE L1 2993 3925 -1958 2 1101 26 30 0 0 chr6 67682255 67682288 -81834749 + AT_rich Low_complexity Low_complexity 1 33 0 2 1101 5165 78 3 3 chr6 67682288 67682980 -81834057 - L1Md_F2 LINE L1 -14 6568 5877 2 1101 637 23 35 0 chr6 67683969 67684055 -81832982 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 2 1101 1119 68 22 11 chr6 67685683 67685862 -81831175 + L1_Mus3 LINE L1 6458 6638 0 2 1101 3364 96 4 8 chr6 67686070 67686555 -81830482 + RLTR1C LTR ERV1 1 483 -20 2 1101 1100 76 21 0 chr6 67686912 67687057 -81829980 - B1_Mus1 SINE Alu 0 148 1 2 1101 201 226 0 0 chr6 67687088 67687141 -81829896 + (CATA)n Simple_repeat Simple_repeat 3 55 0 2 1101 1386 245 97 48 chr6 67687972 67688469 -81828568 - RMER5 LTR ERV1 -5 529 9 2 1101 419 293 0 10 chr6 67688556 67688656 -81828381 + B3A SINE B2 1 99 -99 2 1101 310 289 23 83 chr6 67689624 67689756 -81827281 + MTE-int LTR MaLR 816 939 -641 2 1101 381 223 0 0 chr6 67689758 67689852 -81827185 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 2 1101 517 92 0 0 chr6 67691376 67691441 -81825596 + L1_Mus4 LINE L1 6429 6493 -143 2 1101 619 96 250 9 chr6 67691531 67691642 -81825395 + B1_Mus1 SINE Alu 1 140 -8 2 1101 396 40 0 0 chr6 67691642 67691692 -81825345 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 2 1101 715 277 20 5 chr6 67691892 67692095 -81824942 + B3 SINE B2 2 207 -9 2 1101 508 263 183 50 chr6 67692361 67692601 -81824436 - RLTR10A LTR ERVK 0 411 140 2 1101 1836 201 16 29 chr6 67692642 67693129 -81823908 - RLTR45-int LTR ERVK -202 7042 6522 2 1101 2181 322 68 44 chr6 67693257 67695211 -81821826 - IAP-d-int LTR ERVK -1335 5207 3208 2 1101 870 267 71 60 chr6 67695213 67695746 -81821291 - IAP-d-int LTR ERVK -3871 2671 2133 2 1101 3126 48 5 12 chr6 67695782 67696184 -81820853 - L1Md_F3 LINE L1 -1 6583 6185 2 1101 348 235 106 42 chr6 67696792 67696934 -81820103 - RLTR45-int LTR ERVK -1519 468 318 2 1101 482 258 198 51 chr6 67696950 67697187 -81819850 - RLTR10A LTR ERVK 0 411 140 2 1101 3365 47 33 9 chr6 67697414 67697840 -81819197 + RLTR10C LTR ERVK 1 436 0 2 1101 2326 289 108 26 chr6 67698740 67699723 -81817314 - Lx6 LINE L1 -3 7457 6175 2 1101 3619 232 55 19 chr6 67699764 67700762 -81816275 - Lx6 LINE L1 -63 5817 4784 2 1101 3814 45 0 0 chr6 67701007 67701471 -81815566 - L1Md_T LINE L1 0 6582 6119 2 1101 922 236 92 54 chr6 67701705 67702019 -81815018 - MTD LTR MaLR -14 405 80 2 1101 272 290 84 21 chr6 67701984 67702079 -81814958 + RSINE1 SINE B4 27 127 -38 2 1101 369 0 0 0 chr6 67702110 67702151 -81814886 + (CATA)n Simple_repeat Simple_repeat 2 42 0 2 1101 370 107 9 0 chr6 67702153 67702210 -81814827 - L1_Mur1 LINE L1 -319 5558 5498 2 1101 3353 102 50 75 chr6 67702210 67702796 -81814241 + L1_Mus3 LINE L1 6066 6636 -2 2 1101 23 78 0 0 chr6 67702952 67703003 -81814034 + AT_rich Low_complexity Low_complexity 1 51 0 2 1101 499 112 0 0 chr6 67703027 67703107 -81813930 + L1_Mur1 LINE L1 2877 2956 -2930 2 1101 2858 178 4 15 chr6 67703108 67703643 -81813394 + Lx2B LINE L1 6470 6998 -2 2 1101 932 293 57 70 chr6 67705811 67706396 -81810641 - L1MC1 LINE L1 -97 6236 5675 2 1101 1140 68 0 7 chr6 67706396 67706544 -81810493 - B1_Mus2 SINE Alu 0 147 1 2 1101 932 293 57 70 chr6 67706544 67706682 -81810355 - L1MC1 LINE L1 -659 5674 5523 2 1101 392 67 0 0 chr6 67706682 67706742 -81810295 + L1_Mus2 LINE L1 6507 6566 0 2 1101 23 33 0 0 chr6 67706968 67706998 -81810039 + AT_rich Low_complexity Low_complexity 1 30 0 2 1101 3233 72 5 5 chr6 67707148 67707578 -81809459 + L1_Mus2 LINE L1 6137 6566 0 2 1101 7092 148 59 12 chr6 67711439 67712856 -81804181 - Lx3C LINE L1 -7 6969 5474 2 1101 7005 72 12 0 chr6 67712854 67713850 -81803187 - L1VL1 LINE L1 -2497 1201 194 2 1101 2246 147 49 117 chr6 67713851 67714405 -81802632 - Lx3C LINE L1 -400 5486 4971 2 1101 369 58 0 0 chr6 67714449 67714501 -81802536 + (CAAG)n Simple_repeat Simple_repeat 1 52 0 2 1101 614 159 20 7 chr6 67715055 67715201 -81801836 + (TCTA)n Simple_repeat Simple_repeat 2 149 0 2 1101 383 311 124 34 chr6 67717521 67717844 -81799193 - L1MC4 LINE L1 -2080 5962 5611 2 1101 24 0 0 0 chr6 67717964 67717988 -81799049 + AT_rich Low_complexity Low_complexity 1 24 0 2 1101 328 349 45 20 chr6 67718370 67718569 -81798468 + L1MC1 LINE L1 4887 5090 -1056 2 1101 1287 101 16 26 chr6 67718575 67718769 -81798268 + B2_Mm2 SINE B2 2 193 -2 2 1101 21 71 0 0 chr6 67718782 67718824 -81798213 + AT_rich Low_complexity Low_complexity 1 42 0 2 1101 22 35 0 0 chr6 67719053 67719082 -81797955 + AT_rich Low_complexity Low_complexity 1 29 0 2 1101 1023 292 78 72 chr6 67719090 67720019 -81797018 + L1MC1 LINE L1 5315 6248 -85 2 1101 4973 148 25 1 chr6 67721862 67722696 -81794341 - Lx LINE L1 -5 6649 5796 2 1101 7720 174 34 5 chr6 67722930 67724420 -81792617 - Lx2B LINE L1 -21 6979 5451 2 1101 29 60 0 0 chr6 67725304 67725354 -81791683 + AT_rich Low_complexity Low_complexity 1 50 0 2 1101 189 0 0 0 chr6 67725692 67725713 -81791324 + (CTAAA)n Simple_repeat Simple_repeat 3 23 0 2 1101 1089 89 7 0 chr6 67725924 67726070 -81790967 - B1_Mus1 SINE Alu 0 148 2 2 1101 4317 91 21 3 chr6 67726624 67727229 -81789808 - L1Md_F2 LINE L1 -15 6567 5952 2 1101 2490 67 0 0 chr6 67727337 67727666 -81789371 + ORR1A0 LTR MaLR 1 329 -17 2 1101 196 50 100 0 chr6 67727908 67727948 -81789089 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2 1101 651 157 9 0 chr6 67729301 67729409 -81787628 - MT2C_Mm LTR ERVL -75 400 292 2 1101 9538 167 125 18 chr6 67729413 67730240 -81786797 - L1_Mur1 LINE L1 -426 5460 4641 2 1101 247 25 0 48 chr6 67730240 67730282 -81786755 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2 1101 1028 96 0 0 chr6 67730282 67730417 -81786620 - B1_Mus1 SINE Alu -13 135 1 2 1101 9538 167 125 18 chr6 67730417 67731735 -81785302 - L1_Mur1 LINE L1 -1246 4640 3084 2 1101 216 0 0 0 chr6 67731960 67731984 -81785053 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 1101 2681 169 55 39 chr6 67732017 67732652 -81784385 + L1_Mur1 LINE L1 3280 3924 -1962 2 1101 18493 169 57 16 chr6 67732643 67735472 -81781565 + Lx2 LINE L1 356 3182 -2704 2 1101 261 0 0 0 chr6 67735472 67735501 -81781536 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1101 18493 187 74 20 chr6 67735501 67737155 -81779882 + Lx2 LINE L1 3183 4941 -945 2 1101 1624 168 102 29 chr6 67737155 67737536 -81779501 + RLTR9E LTR ERVK 1 409 0 2 1101 18493 163 27 10 chr6 67737536 67739435 -81777602 + Lx2 LINE L1 4942 6996 -1 2 1101 706 192 33 0 chr6 67742135 67742255 -81774782 - ETnERV2-int LTR ERVK -213 7193 7070 2 1101 308 349 34 43 chr6 67742799 67742981 -81774056 + B3 SINE B2 3 176 -22 2 1101 690 177 0 0 chr6 67743005 67743118 -81773919 - B2_Mm2 SINE B2 -62 133 21 2 1101 432 345 70 24 chr6 67743414 67743785 -81773252 - L1M5 LINE L1 -1972 4174 3787 2 1101 4504 180 31 22 chr6 67743802 67744702 -81772335 - RMER13B LTR ERVK 0 908 1 2 1101 213 167 24 0 chr6 67745211 67745253 -81771784 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2 1101 640 272 43 5 chr6 67746100 67746307 -81770730 + B3 SINE B2 2 216 0 2 1101 245 284 12 0 chr6 67746917 67746998 -81770039 - L1VL4 LINE L1 -5698 604 523 2 1101 1545 34 92 0 chr6 67747440 67747646 -81769391 + L1Md_F3 LINE L1 6360 6584 0 2 1101 463 338 35 20 chr6 67749675 67749877 -81767160 - Lx8 LINE L1 -135 7338 7134 2 1101 1706 217 18 0 chr6 67750330 67750773 -81766264 + L1_Mur3 LINE L1 1480 1930 -3950 2 1101 189 0 0 0 chr6 67751324 67751345 -81765692 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1101 1979 25 13 0 chr6 67751828 67752064 -81764973 + L1Md_F3 LINE L1 6345 6583 -1 2 1101 24 0 0 0 chr6 67752550 67752574 -81764463 + AT_rich Low_complexity Low_complexity 1 24 0 2 1101 429 109 0 0 chr6 67752776 67752840 -81764197 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1101 4864 102 3 0 chr6 67753190 67753909 -81763128 - MusHAL1 LINE L1 -626 2086 1366 2 1101 713 70 0 0 chr6 67753908 67754008 -81763029 + MusHAL1 LINE L1 1238 1337 -1375 2 1101 821 128 40 20 chr6 67753982 67754133 -81762904 + L1_Mur1 LINE L1 2665 2818 -3068 2 1101 337 330 0 0 chr6 67754736 67754827 -81762210 + B3 SINE B2 1 91 -125 2 1101 699 151 100 7 chr6 67754837 67754874 -81762163 - B2_Mm2 SINE B2 -20 175 134 2 1101 387 0 0 0 chr6 67754874 67754917 -81762120 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1101 699 151 100 7 chr6 67754917 67755019 -81762018 - B2_Mm2 SINE B2 -62 133 25 2 1101 219 309 11 0 chr6 67755510 67755604 -81761433 + (TTAGGG)n Simple_repeat Simple_repeat 3 97 0 2 1101 21 36 0 0 chr6 67757759 67757787 -81759250 + AT_rich Low_complexity Low_complexity 1 28 0 2 1101 268 267 158 13 chr6 67758027 67758103 -81758934 + PB1D10 SINE Alu 22 108 -9 2 1101 1250 146 14 0 chr6 67758432 67758645 -81758392 - Lx2 LINE L1 -7 6990 6775 2 1101 6318 158 16 3 chr6 67758645 67760097 -81756940 - Lx2 LINE L1 -349 6648 5169 2 1101 308 250 2 0 chr6 67760663 67760764 -81756273 - L1ME3B LINE L1 -92 6148 5976 2 1101 1122 121 35 0 chr6 67760806 67760979 -81756058 - B2_Mm2 SINE B2 -14 181 3 2 1101 351 0 0 0 chr6 67761707 67761746 -81755291 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1101 818 271 9 5 chr6 67761760 67761971 -81755066 - B3 SINE B2 -4 212 1 2 1101 231 61 0 0 chr6 67762044 67762077 -81754960 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1101 546 231 28 0 chr6 67762122 67762230 -81754807 + B4A SINE B4 165 275 -17 2 1101 2402 28 3 0 chr6 67762752 67763036 -81754001 - L1Md_A LINE L1 0 6582 6298 2 137 4069 213 22 35 chr6 67763494 67764384 -81752653 + RLTR21 LTR ERVK 15 893 -679 2 1102 22 0 0 0 chr6 67764410 67764432 -81752605 + AT_rich Low_complexity Low_complexity 1 22 0 2 1102 483 139 62 36 chr6 67764464 67764576 -81752461 - RLTR45-int LTR ERVK -5244 2162 2048 2 1102 348 100 48 42 chr6 67764577 67764744 -81752293 + (TA)n Simple_repeat Simple_repeat 2 169 0 2 1102 2013 118 29 13 chr6 67764749 67765174 -81751863 - RLTR45-int LTR ERVK -4210 3034 2709 2 1102 20047 99 6 2 chr6 67765186 67768725 -81748312 - L1_Mus1 LINE L1 -14 6553 2998 3 1102 4070 177 49 18 chr6 67768725 67769502 -81747535 - ETnERV2-int LTR ERVK -6603 803 3 3 1102 1162 219 72 46 chr6 67769520 67769912 -81747125 - RLTR13D6 LTR ERVK 0 1114 560 3 1102 7216 76 4 7 chr6 67769919 67770877 -81746160 - L1_Mus1 LINE L1 0 6567 5613 3 1102 3272 138 33 30 chr6 67770877 67771450 -81745587 - RLTR13D6 LTR ERVK -327 575 1 3 1102 18306 190 78 10 chr6 67771479 67772330 -81744707 - Lx4B LINE L1 -785 6273 5404 3 1102 7576 108 5 36 chr6 67772330 67773479 -81743558 + RLTR13D3 LTR ERVK 1 1114 0 3 1102 18306 182 105 13 chr6 67773479 67778011 -81739026 - Lx4B LINE L1 -480 5403 395 3 1102 21 57 0 0 chr6 67778224 67778259 -81738778 + AT_rich Low_complexity Low_complexity 1 35 0 3 1102 359 41 20 0 chr6 67779154 67779203 -81737834 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 3 1102 1304 266 73 30 chr6 67779203 67779668 -81737369 - RMER5 LTR ERV1 -17 517 33 3 1102 349 269 59 32 chr6 67779794 67779980 -81737057 + B3 SINE B2 1 198 0 3 1102 417 39 0 0 chr6 67780447 67780498 -81736539 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1102 362 375 58 135 chr6 67780883 67780985 -81736052 + MTE-int LTR MaLR 842 938 -642 3 1102 621 0 0 0 chr6 67780985 67781054 -81735983 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 3 1102 362 375 58 135 chr6 67781054 67781112 -81735925 + MTE-int LTR MaLR 939 956 -624 3 1102 267 31 0 0 chr6 67781112 67781144 -81735893 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1102 362 375 58 135 chr6 67781144 67781546 -81735491 + MTE-int LTR MaLR 957 1362 -218 3 1102 25344 118 16 28 chr6 67781835 67784159 -81732878 - L1_Mus2 LINE L1 -1 6565 4206 3 1102 369 0 0 0 chr6 67784159 67784200 -81732837 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1102 25344 143 10 52 chr6 67784200 67787916 -81729121 - L1_Mus2 LINE L1 -1678 4205 725 3 1102 405 292 19 6 chr6 67787895 67788057 -81728980 - L1_Mus2 LINE L1 -5783 833 670 3 1102 382 269 42 128 chr6 67788212 67788478 -81728559 - L1VL1 LINE L1 -6056 366 28 3 1102 207 108 27 0 chr6 67788605 67788642 -81728395 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1102 777 124 73 0 chr6 67789026 67789163 -81727874 - L1Md_F2 LINE L1 -5 6577 6431 3 1102 328 310 23 0 chr6 67790672 67790759 -81726278 + B3A SINE B2 1 89 -109 3 1102 540 0 0 0 chr6 67790762 67790822 -81726215 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1102 608 191 0 0 chr6 67790824 67790934 -81726103 - B2_Mm2 SINE B2 -65 130 21 3 1102 226 224 39 26 chr6 67791869 67791947 -81725090 - L1M5 LINE L1 -2053 4093 4015 3 1102 180 143 0 0 chr6 67792302 67792344 -81724693 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1102 7667 49 1 0 chr6 67792373 67793407 -81723630 - L1Md_F2 LINE L1 -12 6570 5536 3 1102 570 286 54 20 chr6 67794639 67794842 -81722195 + B3 SINE B2 2 211 -5 3 1102 1514 161 82 3 chr6 67795374 67795667 -81721370 + Lx2 LINE L1 6679 6994 -3 3 1102 254 50 0 24 chr6 67796264 67796305 -81720732 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 3 1102 998 88 0 56 chr6 67796314 67796458 -81720579 - B1_Mm SINE Alu -10 137 2 3 1102 408 316 20 0 chr6 67798280 67798378 -81718659 + B3A SINE B2 1 100 -98 3 1102 474 83 0 0 chr6 67798409 67798481 -81718556 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1102 514 162 49 22 chr6 67798481 67798597 -81718440 - B2_Mm2 SINE B2 -68 125 9 3 1102 5511 106 17 0 chr6 67798646 67799479 -81717558 - L1_Mus2 LINE L1 -1 6565 5719 3 1102 5069 180 2 191 chr6 67799477 67800503 -81716534 + L1_Mur2 LINE L1 4474 5174 -703 3 1102 4410 49 0 55 chr6 67800503 67801103 -81715934 - L1Md_F2 LINE L1 -3 6579 6013 3 1102 5659 26 2 1 chr6 67801103 67801911 -81715126 + L1Md_F2 LINE L1 5179 5987 -595 3 1102 6363 102 5 1 chr6 67801908 67802715 -81714322 + L1_Mus3 LINE L1 5186 5994 -644 3 1102 4217 118 24 118 chr6 67802715 67803608 -81713429 - RMER17D2 LTR ERVK 0 809 1 3 1102 6363 120 18 7 chr6 67803608 67804237 -81712800 + L1_Mus3 LINE L1 5995 6636 -2 3 1102 10388 139 10 4 chr6 67804250 67806857 -81710180 + L1_Mus3 LINE L1 4005 6633 -5 3 1102 1620 67 0 3 chr6 67806983 67807339 -81709698 + (GGAGAA)n Simple_repeat Simple_repeat 1 355 0 3 1102 2288 174 77 16 chr6 67807339 67807946 -81709091 + MusHAL1 LINE L1 82 725 -1987 3 1102 440 363 75 42 chr6 67808602 67808987 -81708050 - L1MD2 LINE L1 -508 5851 5454 3 1102 2990 123 2 41 chr6 67809427 67809937 -81707100 - Lx LINE L1 -87 6567 6078 3 1102 3692 58 0 7 chr6 67810009 67810474 -81706563 - L1_Mus1 LINE L1 0 6567 6106 3 1102 2905 58 13 2 chr6 67810474 67810871 -81706166 + L1_Mus1 LINE L1 5715 6115 -452 3 1102 2364 275 57 48 chr6 67812899 67814066 -81702971 - RLTR42-int LTR ERVK -340 5182 4005 3 1102 275 239 91 0 chr6 67814123 67814211 -81702826 - RLTR42-int LTR ERVK -2547 2975 2880 3 1102 30 0 0 0 chr6 67814484 67814514 -81702523 + AT_rich Low_complexity Low_complexity 1 30 0 3 1102 853 284 120 58 chr6 67815276 67815776 -81701261 - RMER5 LTR ERV1 -3 531 1 3 1102 5395 149 43 3 chr6 67815979 67816892 -81700145 - RMER17B LTR ERVK -9 949 1 3 1102 264 122 0 0 chr6 67816904 67816945 -81700092 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1102 227 306 0 40 chr6 67816993 67817068 -81699969 - MIR SINE MIR -156 106 35 3 1102 504 407 62 40 chr6 67817835 67818334 -81698703 + MTE-int LTR MaLR 831 1340 -240 3 1102 36981 32 4 6 chr6 67818592 67824572 -81692465 - L1Md_T LINE L1 -1 6581 615 3 1102 23 0 0 0 chr6 67824635 67824658 -81692379 + AT_rich Low_complexity Low_complexity 1 23 0 3 1102 216 122 0 0 chr6 67824849 67824890 -81692147 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1102 210 37 0 0 chr6 67827401 67827428 -81689609 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 3 1102 968 151 6 6 chr6 67827428 67827588 -81689449 - B2_Mm2 SINE B2 -34 161 2 3 1102 2363 204 27 3 chr6 67827952 67828952 -81688085 + L1VL4 LINE L1 544 1573 -1986 3 1102 198 0 0 0 chr6 67829401 67829423 -81687614 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1102 22 0 0 0 chr6 67829941 67829963 -81687074 + AT_rich Low_complexity Low_complexity 1 22 0 3 1102 29 0 0 0 chr6 67830660 67830689 -81686348 + AT_rich Low_complexity Low_complexity 1 29 0 3 1102 21 0 0 0 chr6 67830740 67830761 -81686276 + AT_rich Low_complexity Low_complexity 1 21 0 3 1102 4456 56 18 9 chr6 67831157 67831716 -81685321 - LTRIS2 LTR ERV1 0 564 1 3 1102 9278 67 2 1 chr6 67833599 67835001 -81682036 + L1Md_F2 LINE L1 4599 6003 -579 3 1102 8338 197 71 60 chr6 67835001 67836969 -81680068 - MERVK26-int LTR ERVK -4398 2521 541 3 1102 276 30 0 0 chr6 67836969 67837002 -81680035 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 3 1102 8338 197 71 60 chr6 67837002 67837528 -81679509 - MERVK26-int LTR ERVK -6379 540 3 3 1102 2179 209 141 24 chr6 67837528 67838103 -81678934 - RLTR26 LTR ERVK 0 642 1 3 1102 18780 87 6 14 chr6 67839412 67842243 -81674794 + L1Md_F2 LINE L1 2777 5586 -297 3 1102 7223 74 27 5 chr6 67842243 67843216 -81673821 + L1Md_F2 LINE L1 5587 6580 -2 3 1102 27 0 0 0 chr6 67843309 67843336 -81673701 + AT_rich Low_complexity Low_complexity 1 27 0 3 1102 675 335 111 57 chr6 67843421 67843917 -81673120 - RMER5 LTR ERV1 -3 531 9 3 1102 435 211 0 0 chr6 67844183 67844278 -81672759 + (CATATA)n Simple_repeat Simple_repeat 1 95 0 3 1102 261 151 0 0 chr6 67844277 67844330 -81672707 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1102 5867 117 13 6 chr6 67844964 67845869 -81671168 + Lx3_Mus LINE L1 6098 7009 0 3 1102 373 326 20 10 chr6 67847428 67847527 -81669510 + B3A SINE B2 1 100 -98 3 1102 378 0 0 0 chr6 67847539 67847581 -81669456 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 3 1102 619 170 19 0 chr6 67847629 67847735 -81669302 - B2_Mm2 SINE B2 -65 130 23 3 1102 522 202 0 26 chr6 67848354 67848471 -81668566 + RMER3D-int LTR ERVK 1420 1533 -1309 3 1102 572 203 34 34 chr6 67848503 67848651 -81668386 + RMER3D-int LTR ERVK 1532 1679 -1163 3 1102 2248 228 30 43 chr6 67848669 67849406 -81667631 + RMER3D-int LTR ERVK 1925 2651 -191 3 1102 2442 189 5 70 chr6 67849406 67850008 -81667029 + L1_Mur2 LINE L1 5031 5593 -284 3 1102 18935 167 21 84 chr6 67850009 67850030 -81667007 + Lx3C LINE L1 1387 1416 -4470 3 1102 198 0 0 0 chr6 67850030 67850052 -81666985 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 3 1102 18935 162 29 67 chr6 67850052 67851188 -81665849 + Lx3C LINE L1 1417 2572 -4404 3 1102 2643 56 0 17 chr6 67851188 67851534 -81665503 + IAPEY2_LTR LTR ERVK 18 357 0 3 1102 18935 162 29 67 chr6 67851534 67855848 -81661189 + Lx3C LINE L1 2573 6966 -10 3 1102 450 36 0 0 chr6 67855848 67855904 -81661133 + (TAA)n Simple_repeat Simple_repeat 2 57 0 3 1102 3504 125 67 106 chr6 67856316 67857156 -81659881 + RMER17D2 LTR ERVK 1 807 -2 3 1102 255 349 28 9 chr6 67857292 67857399 -81659638 + MTEa LTR MaLR 26 134 -245 3 1102 257 284 0 0 chr6 67859163 67859230 -81657807 + (CATA)n Simple_repeat Simple_repeat 2 68 0 3 1102 29 28 0 0 chr6 67860526 67860562 -81656475 + AT_rich Low_complexity Low_complexity 1 36 0 3 1102 315 351 31 8 chr6 67860958 67861087 -81655950 - RMER15 LTR ERVL -66 509 378 3 1102 522 0 0 0 chr6 67861206 67861264 -81655773 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1102 25 0 0 0 chr6 67861330 67861355 -81655682 + AT_rich Low_complexity Low_complexity 1 25 0 3 1102 34 84 0 0 chr6 67861419 67861502 -81655535 + AT_rich Low_complexity Low_complexity 1 83 0 3 1102 24 0 0 0 chr6 67861718 67861742 -81655295 + AT_rich Low_complexity Low_complexity 1 24 0 3 1102 225 132 0 0 chr6 67861889 67861927 -81655110 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1102 619 173 27 0 chr6 67862003 67862113 -81654924 - B2_Mm2 SINE B2 -15 180 68 3 1102 2387 153 14 21 chr6 67862113 67862533 -81654504 + Lx LINE L1 6238 6654 0 3 1102 700 314 76 35 chr6 67862553 67862959 -81654078 - RMER5 LTR ERV1 -37 497 75 3 1102 607 276 135 56 chr6 67864826 67865167 -81651870 + RLTR9A LTR ERVK 1 368 0 3 1102 23 54 0 0 chr6 67866296 67866333 -81650704 + AT_rich Low_complexity Low_complexity 1 37 0 3 1102 3386 148 10 5 chr6 67866677 67867273 -81649764 - Lx3_Mus LINE L1 -136 6873 6275 3 1102 3690 127 19 26 chr6 67867257 67868070 -81648967 + Lx3_Mus LINE L1 5500 6301 -708 3 1102 3627 209 83 29 chr6 67868402 67869299 -81647738 - RMER19B LTR ERVK -12 890 1 3 1102 256 113 32 16 chr6 67869444 67869507 -81647530 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 3 1102 1133 76 0 14 chr6 67869507 67869654 -81647383 - B1_Mus1 SINE Alu -1 147 3 3 1102 277 301 108 43 chr6 67869806 67869945 -81647092 - RSINE1 SINE B4 0 165 18 3 1102 2445 24 0 0 chr6 67870014 67870303 -81646734 + ORR1A0 LTR MaLR 1 289 -57 3 1102 196 53 26 26 chr6 67870308 67870347 -81646690 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1102 3375 41 0 14 chr6 67870381 67870801 -81646236 - L1Md_F2 LINE L1 -1 6581 6168 4 1102 408 36 0 0 chr6 67870802 67870857 -81646180 + L1_Mm LINE L1 4973 5027 -856 4 1102 470 0 145 0 chr6 67870857 67870919 -81646118 + ORR1A0 LTR MaLR 276 346 0 3 1102 921 113 0 0 chr6 67871921 67872054 -81644983 + B1_Mus1 SINE Alu 16 148 0 4 1102 402 21 0 0 chr6 67872067 67872114 -81644923 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 4 1102 468 327 41 19 chr6 67872114 67872432 -81644605 - MYSERV6-int LTR ERVK -8104 855 531 4 1102 321 221 34 34 chr6 67872586 67872675 -81644362 - RLTR15 LTR ERVK -238 121 33 4 1102 446 350 36 7 chr6 67873195 67873333 -81643704 - RSINE1 SINE B4 -13 152 11 4 1102 738 0 0 0 chr6 67873658 67873740 -81643297 + (TTC)n Simple_repeat Simple_repeat 2 83 0 4 1102 1299 91 40 0 chr6 67873740 67873916 -81643121 - B2_Mm2 SINE B2 -12 183 1 4 1102 297 0 0 0 chr6 67874080 67874113 -81642924 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1102 609 110 0 0 chr6 67874347 67874438 -81642599 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 4 1102 21 71 0 0 chr6 67874900 67874942 -81642095 + AT_rich Low_complexity Low_complexity 1 42 0 4 1102 24 32 0 0 chr6 67875304 67875335 -81641702 + AT_rich Low_complexity Low_complexity 1 31 0 4 1102 1363 74 0 11 chr6 67875339 67875516 -81641521 - B2_Mm1t SINE B2 -18 175 1 4 1102 389 252 17 9 chr6 67875600 67875716 -81641321 + Tigger5 DNA MER2_type 2170 2286 -120 4 1102 400 91 57 0 chr6 67876508 67876596 -81640441 + (CAA)n Simple_repeat Simple_repeat 1 93 0 4 1102 1209 97 6 0 chr6 67877258 67877434 -81639603 + L1_Mus2 LINE L1 6390 6566 0 4 1102 352 349 62 31 chr6 67878211 67878403 -81638634 - ID_B1 SINE B4 -19 205 8 4 1102 818 215 221 59 chr6 67880094 67880349 -81636688 - RMER12 LTR ERVK -150 1172 989 4 1102 5368 109 12 10 chr6 67880349 67881153 -81635884 + RLTR13D1 LTR ERVK 1 806 0 4 1102 1791 218 118 37 chr6 67881153 67881356 -81635681 - RMER12 LTR ERVK -329 993 785 4 1102 887 196 87 142 chr6 67881356 67881772 -81635265 - RLTR9C LTR ERVK 0 393 1 4 1102 1791 218 118 37 chr6 67881772 67881786 -81635251 - RMER12 LTR ERVK -538 784 771 4 1102 516 93 0 0 chr6 67881786 67881861 -81635176 + (TGGA)n Simple_repeat Simple_repeat 1 75 0 4 1102 1791 218 118 37 chr6 67881861 67882204 -81634833 - RMER12 LTR ERVK -552 770 389 4 1102 408 369 66 9 chr6 67884228 67884449 -81632588 - Lx8 LINE L1 -169 7304 7067 4 1102 3510 25 0 0 chr6 67884449 67884845 -81632192 - MTA_Mm LTR MaLR 0 396 1 4 1102 408 369 66 9 chr6 67884845 67884940 -81632097 - Lx8 LINE L1 -407 7066 6970 4 1102 676 266 51 0 chr6 67885120 67885278 -81631759 - B3 SINE B2 -3 213 48 4 1102 641 197 8 0 chr6 67885861 67885983 -81631054 + B2_Mm2 SINE B2 8 130 -65 4 1102 249 371 142 34 chr6 67885982 67886032 -81631005 - RSINE1 SINE B4 0 165 2 4 1102 375 326 20 0 chr6 67886032 67886130 -81630907 - B3A SINE B2 -98 100 1 4 1102 2827 16 0 0 chr6 67886390 67886712 -81630325 - RLTRETN_Mm LTR ERVK 0 322 1 4 1102 35155 33 4 9 chr6 67886712 67891583 -81625454 - MMETn-int LTR ERVK 0 4844 1 4 1102 2747 22 0 0 chr6 67891583 67891905 -81625132 - RLTRETN_Mm LTR ERVK 0 322 1 4 1102 1255 77 6 0 chr6 67893546 67893715 -81623322 + ORR1A1 LTR MaLR 174 343 -3 4 1102 269 68 23 0 chr6 67894517 67894561 -81622476 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 1102 480 286 16 95 chr6 67894684 67894933 -81622104 + L1VL1 LINE L1 179 437 -5981 4 1102 245 207 77 51 chr6 67894938 67895055 -81621982 + L1VL2 LINE L1 11 130 -6205 4 1102 467 237 22 15 chr6 67895104 67895241 -81621796 + L1Md_F LINE L1 670 807 -5809 4 137 17673 147 12 14 chr6 67895245 67898817 -81618220 + L1Md_F LINE L1 725 4287 -1596 4 1103 7327 88 3 0 chr6 67898814 67899894 -81617143 + L1_Mus1 LINE L1 5485 6567 0 4 1103 8476 137 11 9 chr6 67899899 67901286 -81615751 + L1Md_F LINE L1 4274 5664 -219 4 1103 2099 114 6 38 chr6 67901286 67901632 -81615405 + L1_Mus3 LINE L1 6297 6631 -7 4 1103 29 0 0 0 chr6 67901928 67901957 -81615080 + AT_rich Low_complexity Low_complexity 1 29 0 4 1103 253 261 14 0 chr6 67901957 67902026 -81615011 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1103 3129 72 2 0 chr6 67902074 67902476 -81614561 - L1_Mus1 LINE L1 0 6567 6165 4 1103 708 267 61 9 chr6 67902512 67902724 -81614313 - Lx6 LINE L1 -293 7167 6945 4 1103 566 367 42 10 chr6 67902747 67903055 -81613982 - Lx6 LINE L1 -625 6835 6518 4 1103 882 306 31 3 chr6 67903055 67903347 -81613690 - Lx6 LINE L1 -1187 6273 5974 4 1103 269 51 0 25 chr6 67903646 67903686 -81613351 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 4 1103 929 72 0 0 chr6 67903697 67903822 -81613215 - B1_Mm SINE Alu -21 126 2 4 1103 756 0 0 0 chr6 67906192 67906276 -81610761 + (TTC)n Simple_repeat Simple_repeat 1 84 0 4 1103 12331 146 55 30 chr6 67906291 67909686 -81607351 - L1_Mus2 LINE L1 0 6566 2953 4 1103 261 341 74 37 chr6 67910499 67910688 -81606349 - MTE-int LTR MaLR -27 1553 1358 4 1103 914 314 93 26 chr6 67912179 67912640 -81604397 + RMER5 LTR ERV1 40 531 -3 4 1103 648 237 77 26 chr6 67912644 67912878 -81604159 + RLTR42-int LTR ERVK 4009 4254 -1268 4 1103 2124 248 67 52 chr6 67912996 67913734 -81603303 - L1_Rod LINE L1 -1122 4725 3981 4 1103 306 0 0 0 chr6 67913734 67913768 -81603269 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1103 2124 248 67 52 chr6 67913768 67913935 -81603102 - L1_Rod LINE L1 -1867 3980 3808 4 1103 6708 126 15 1 chr6 67913957 67914022 -81603015 - L1_Mus4 LINE L1 -6 6630 6562 4 1103 225 0 0 0 chr6 67914022 67914047 -81602990 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1103 8522 145 10 6 chr6 67914047 67915752 -81601285 - L1_Mus4 LINE L1 -75 6561 4859 4 1103 302 0 26 0 chr6 67915752 67915790 -81601247 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1103 8522 171 5 11 chr6 67915790 67916344 -81600693 - L1_Mus4 LINE L1 -1025 4858 4305 4 1103 1220 284 33 38 chr6 67916367 67916847 -81600190 + RLTR42-int LTR ERVK 4253 4730 -792 4 1103 28927 61 2 0 chr6 67916874 67920614 -81596423 - L1_Mm LINE L1 0 5883 2139 4 1103 1023 171 75 0 chr6 67920619 67920806 -81596231 - Lx5 LINE L1 -512 6538 6338 4 1103 5697 179 57 40 chr6 67920806 67921618 -81595419 + Lx4B LINE L1 4571 5397 -480 4 1103 7693 108 4 27 chr6 67921618 67922758 -81594279 - RLTR13D3 LTR ERVK 0 1114 1 4 1103 5697 198 47 23 chr6 67922758 67923644 -81593393 + Lx4B LINE L1 5398 6310 -748 4 1103 3202 142 33 30 chr6 67923644 67924217 -81592820 + RLTR13D6 LTR ERVK 1 575 -327 4 1103 7442 66 4 11 chr6 67924217 67925179 -81591858 + L1_Mus1 LINE L1 5613 6567 0 4 1103 1186 206 69 54 chr6 67925190 67925587 -81591450 + RLTR13D6 LTR ERVK 560 1114 0 4 1103 3828 182 56 18 chr6 67925605 67926377 -81590660 + ETnERV2-int LTR ERVK 3 803 -6603 4 1103 14273 105 17 2 chr6 67926377 67926840 -81590197 + L1_Mus1 LINE L1 2998 3476 -2407 4 1103 189 74 0 0 chr6 67926840 67926867 -81590170 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4 1103 14273 114 22 2 chr6 67926867 67929840 -81587197 + L1_Mus1 LINE L1 3477 6567 0 4 1103 2279 144 77 29 chr6 67929848 67930326 -81586711 + ETnERV2-int LTR ERVK 1562 2062 -5344 4 1103 246 143 48 0 chr6 67930327 67930390 -81586647 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1103 311 120 82 41 chr6 67930390 67930512 -81586525 + (TATAA)n Simple_repeat Simple_repeat 3 129 0 4 1103 414 52 15 122 chr6 67930606 67930802 -81586235 + (TA)n Simple_repeat Simple_repeat 2 176 0 4 1103 574 147 0 25 chr6 67930816 67930935 -81586102 + ETnERV2-int LTR ERVK 2047 2162 -5244 4 1103 4098 207 26 38 chr6 67931015 67931905 -81585132 - RLTR21 LTR ERVK -679 893 15 4 1103 249 33 0 0 chr6 67931943 67931973 -81585064 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1103 487 227 63 9 chr6 67932868 67932979 -81584058 - B4A SINE B4 -17 275 159 4 1103 492 18 0 0 chr6 67933023 67933080 -81583957 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1103 585 291 65 5 chr6 67933151 67933351 -81583686 + B3 SINE B2 1 212 -4 4 1103 301 342 26 33 chr6 67934083 67934105 -81582932 + L1ME3B LINE L1 5929 5950 -223 4 1103 1201 122 26 11 chr6 67934105 67934296 -81582741 + B2_Mm2 SINE B2 2 195 0 4 1103 308 279 15 19 chr6 67934296 67934424 -81582613 + L1ME3B LINE L1 5951 6148 -92 4 1103 6226 160 17 6 chr6 67934994 67936451 -81580586 + Lx2 LINE L1 5169 6643 -354 4 1103 1267 142 14 0 chr6 67936451 67936662 -81580375 + Lx2 LINE L1 6775 6988 -9 4 1103 7348 84 2 7 chr6 67936834 67938028 -81579009 - L1Md_F2 LINE L1 0 6582 5399 4 1103 277 263 156 13 chr6 67938222 67938299 -81578738 - PB1D10 SINE Alu -9 108 21 4 1103 21 0 0 0 chr6 67940258 67940279 -81576758 + AT_rich Low_complexity Low_complexity 1 21 0 4 1103 22421 78 12 1 chr6 67940590 67944246 -81572791 + L1Md_F LINE L1 700 4392 -1491 4 1103 4411 44 0 7 chr6 67944246 67944792 -81572245 + L1Md_F3 LINE L1 6041 6582 -2 4 1103 12946 83 7 17 chr6 67944792 67945169 -81571868 + L1Md_F LINE L1 4393 4753 -1130 4 1103 7221 85 1 5 chr6 67945233 67946652 -81570385 - L1_Mus2 LINE L1 -1 6565 5153 4 1103 512 326 20 30 chr6 67946652 67946949 -81570088 - Lx8 LINE L1 -818 6655 6362 4 1103 354 337 105 33 chr6 67947021 67947202 -81569835 - ORR1D2 LTR MaLR -135 235 42 4 1103 330 361 6 17 chr6 67947224 67947396 -81569641 - Lx8 LINE L1 -1107 6366 6197 4 1103 1770 99 111 47 chr6 67947424 67947675 -81569362 - L1_Mur1 LINE L1 -988 4898 4647 4 1103 413 62 15 0 chr6 67947675 67947740 -81569297 + (TTTG)n Simple_repeat Simple_repeat 1 66 0 4 1103 1770 99 111 47 chr6 67947740 67947849 -81569188 - L1_Mur1 LINE L1 -1240 4646 4515 4 1103 29 60 0 0 chr6 67948099 67948149 -81568888 + AT_rich Low_complexity Low_complexity 1 50 0 4 1103 22 0 0 0 chr6 67948197 67948219 -81568818 + AT_rich Low_complexity Low_complexity 1 22 0 4 1103 2095 126 3 3 chr6 67948431 67948742 -81568295 + RLTR10E LTR ERVK 1 311 0 4 1103 864 220 56 19 chr6 67949107 67949320 -81567717 - Lx4B LINE L1 -7 7051 6831 4 1103 363 23 0 0 chr6 67949426 67949470 -81567567 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1103 213 94 0 0 chr6 67949472 67949504 -81567533 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1103 602 220 0 45 chr6 67949511 67949644 -81567393 + B1_Mus2 SINE Alu 21 147 0 4 1103 429 20 0 0 chr6 67949648 67949698 -81567339 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1103 800 157 0 7 chr6 67949690 67949838 -81567199 + GA-rich Low_complexity Low_complexity 2 148 0 4 1103 4186 207 47 4 chr6 67951804 67952737 -81564300 - Lx5 LINE L1 -286 6764 5792 4 1103 1881 167 79 33 chr6 67952740 67953028 -81564009 - L1_Mur2 LINE L1 -827 5050 4752 4 1103 2929 137 10 12 chr6 67953028 67953515 -81563522 - Lx LINE L1 0 6654 6169 4 1103 1881 167 79 33 chr6 67953515 67953606 -81563431 - L1_Mur2 LINE L1 -1126 4751 4639 4 1103 252 0 0 0 chr6 67953606 67953634 -81563403 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1103 1881 167 79 33 chr6 67953634 67953711 -81563326 - L1_Mur2 LINE L1 -1239 4638 4574 4 1103 1129 62 14 0 chr6 67953713 67953857 -81563180 + B1_Mm SINE Alu 2 147 0 4 1103 737 184 8 0 chr6 67953926 67954051 -81562986 + B1_Mur4 SINE Alu 1 126 -24 4 1103 231 36 0 0 chr6 67954051 67954079 -81562958 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1103 630 124 16 40 chr6 67954211 67954243 -81562794 - L1_Mur2 LINE L1 -3694 2183 2151 4 1103 432 0 0 0 chr6 67954243 67954291 -81562746 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1103 630 124 16 40 chr6 67954291 67954384 -81562653 - L1_Mur2 LINE L1 -3727 2150 2061 4 1103 432 51 0 0 chr6 67954390 67954449 -81562588 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1103 455 336 32 36 chr6 67954636 67954889 -81562148 + Lx7 LINE L1 6983 7234 -462 4 1103 5907 196 39 48 chr6 67954919 67956720 -81560317 + Lx5 LINE L1 5222 7040 -10 5 1103 836 234 25 50 chr6 67956743 67956982 -81560055 + Lx5 LINE L1 6743 6975 -75 5 1103 21 0 0 0 chr6 67957581 67957602 -81559435 + AT_rich Low_complexity Low_complexity 1 21 0 5 1103 25 31 0 0 chr6 67958940 67958972 -81558065 + AT_rich Low_complexity Low_complexity 1 32 0 5 1103 266 281 84 12 chr6 67959190 67959273 -81557764 + RMER12 LTR ERVK 1 89 -1233 5 1103 21 36 0 0 chr6 67959786 67959814 -81557223 + AT_rich Low_complexity Low_complexity 1 28 0 5 1103 240 185 0 0 chr6 67960649 67960703 -81556334 + CT-rich Low_complexity Low_complexity 1 54 0 5 1103 544 274 9 54 chr6 67960785 67961009 -81556028 - RLTR18-int LTR ERVK -5145 216 3 5 1103 3014 129 31 57 chr6 67961117 67961734 -81555303 - L1_Mur1 LINE L1 -655 5231 4631 5 1103 4112 178 53 87 chr6 67961735 67961893 -81555144 + RLTR13D6 LTR ERVK 1 228 -730 5 1103 797 0 11 0 chr6 67961893 67961986 -81555051 + (CCCTAA)n Simple_repeat Simple_repeat 6 99 0 5 1103 4112 159 52 71 chr6 67961986 67962775 -81554262 + RLTR13D6 LTR ERVK 125 978 0 5 1103 9336 124 12 14 chr6 67962775 67964439 -81552598 - L1_Mur1 LINE L1 -1284 4602 2942 5 1103 6452 155 42 2 chr6 67964435 67966044 -81550993 + Lx3A LINE L1 5248 6936 -45 5 1103 1422 255 40 73 chr6 67966119 67966546 -81550491 - RLTR18B LTR ERVK -99 413 1 5 1103 327 49 0 0 chr6 67967918 67967959 -81549078 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 5 1103 21 0 0 0 chr6 67968228 67968249 -81548788 + AT_rich Low_complexity Low_complexity 1 21 0 5 1103 24 53 0 0 chr6 67968430 67968468 -81548569 + AT_rich Low_complexity Low_complexity 1 38 0 5 1103 387 0 0 0 chr6 67968522 67968565 -81548472 + (TTA)n Simple_repeat Simple_repeat 2 44 0 5 1103 370 228 8 16 chr6 67968565 67968687 -81548350 - Lx4A LINE L1 -5 7053 6931 5 1103 348 24 0 0 chr6 67968696 67968737 -81548300 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1103 4187 152 78 64 chr6 67968756 67969649 -81547388 - RMER17A2 LTR ERVK 0 906 1 5 1103 2293 79 25 19 chr6 67969649 67970003 -81547034 - Lx3_Mus LINE L1 -126 6883 6528 5 1103 3669 186 22 14 chr6 67969996 67970710 -81546327 - Lx4A LINE L1 -140 6918 6199 5 1103 1183 162 0 36 chr6 67970698 67970947 -81546090 - Lx4A LINE L1 -1050 6008 5769 5 1103 2931 94 2 0 chr6 67970945 67971372 -81545665 - L1_Mus4 LINE L1 -242 6394 5967 5 1103 896 75 0 0 chr6 67971371 67971491 -81545546 + L1_Mus4 LINE L1 5587 5706 -930 5 1103 245 29 29 0 chr6 67972390 67972424 -81544613 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1103 184 30 61 0 chr6 67972548 67972581 -81544456 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 5 1103 472 216 9 0 chr6 67973028 67973144 -81543893 - Lx2 LINE L1 -94 6903 6787 5 1103 3076 148 11 6 chr6 67973145 67973689 -81543348 + L1_Mus3 LINE L1 5135 5681 -202 5 1103 5288 122 9 5 chr6 67973696 67974497 -81542540 + L1_Mus3 LINE L1 5835 6638 0 5 1103 542 41 0 14 chr6 67974796 67974870 -81542167 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 5 1103 1208 91 6 0 chr6 67974871 67975047 -81541990 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 5 1103 394 122 0 0 chr6 67976244 67976318 -81540719 - Lx2 LINE L1 0 6997 6924 5 1103 2351 69 119 11 chr6 67976320 67976672 -81540365 + RLTR10 LTR ERVK 1 390 0 5 1103 301 326 65 11 chr6 67976791 67976884 -81540153 + B3 SINE B2 1 98 -118 5 1103 195 100 0 0 chr6 67976913 67976943 -81540094 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1103 596 150 40 13 chr6 67976943 67977059 -81539978 - B2_Mm2 SINE B2 -68 125 9 5 1103 5640 97 18 0 chr6 67977108 67977940 -81539097 - L1_Mus2 LINE L1 -1 6565 5719 5 1103 3307 125 6 6 chr6 67977938 67978485 -81538552 + L1_Mm LINE L1 4480 5026 -857 5 1103 3916 154 78 9 chr6 67978485 67979231 -81537806 - RMER17D2 LTR ERVK -12 797 1 5 1103 3796 137 29 0 chr6 67979234 67979861 -81537176 + L1_Mus3 LINE L1 5992 6636 -2 5 1103 10260 154 11 5 chr6 67979874 67980673 -81536364 + L1_Mus3 LINE L1 4005 4809 -1074 5 1103 1968 72 86 64 chr6 67980673 67980986 -81536051 - RLTR46 LTR ERVK 0 320 1 5 1103 10260 136 10 3 chr6 67980986 67982797 -81534240 + L1_Mus3 LINE L1 4810 6633 -5 5 1103 780 11 0 0 chr6 67982916 67983005 -81534032 + (GAA)n Simple_repeat Simple_repeat 2 90 0 5 1103 2408 174 66 12 chr6 67983007 67983611 -81533426 + MusHAL1 LINE L1 89 725 -1987 5 1103 232 287 60 65 chr6 67984255 67984456 -81532581 - L1MD LINE L1 -508 5851 5652 5 1103 22 0 0 0 chr6 67984606 67984628 -81532409 + AT_rich Low_complexity Low_complexity 1 22 0 5 1103 2967 127 2 41 chr6 67985082 67985592 -81531445 - Lx LINE L1 -87 6567 6078 5 1103 3631 65 0 7 chr6 67985663 67986128 -81530909 - L1_Mus1 LINE L1 0 6567 6106 5 1103 2930 50 13 2 chr6 67986128 67986525 -81530512 + L1_Mus1 LINE L1 5715 6115 -452 5 1103 2308 281 54 46 chr6 67988563 67989732 -81527305 - RLTR42-int LTR ERVK -340 5182 4005 5 1103 275 239 91 0 chr6 67989789 67989877 -81527160 - RLTR42-int LTR ERVK -2547 2975 2880 5 1103 23 33 0 0 chr6 67991723 67991753 -81525284 + AT_rich Low_complexity Low_complexity 1 30 0 5 1103 468 297 98 5 chr6 67991866 67992059 -81524978 - RMER5 LTR ERV1 -3 531 321 5 1103 516 235 94 94 chr6 67992118 67992362 -81524675 - RMER5 LTR ERV1 -290 244 1 5 1103 512 222 20 0 chr6 67992576 67992675 -81524362 - RMER17B LTR ERVK -6 952 852 5 1103 2100 191 181 18 chr6 67992670 67992741 -81524296 + RMER17B LTR ERVK 320 399 -559 5 1103 685 76 9 9 chr6 67992741 67992847 -81524190 + (TC)n Simple_repeat Simple_repeat 2 107 0 5 1103 2100 191 181 18 chr6 67992847 67993323 -81523714 + RMER17B LTR ERVK 400 955 -3 5 1103 405 108 0 0 chr6 67993325 67993390 -81523647 + Lx3_Mus LINE L1 6421 6485 -524 5 1103 14761 158 11 14 chr6 67993389 67996751 -81520286 - L1Md_F LINE L1 -1962 3924 551 5 1103 337 312 17 97 chr6 67996913 67997158 -81519879 - L1VL1 LINE L1 -5981 437 183 5 1103 213 137 39 19 chr6 67997288 67997340 -81519697 + T-rich Low_complexity Low_complexity 3 55 0 5 1103 2773 55 3 0 chr6 67998155 67998500 -81518537 - ORR1A1 LTR MaLR 0 346 1 5 1103 380 326 20 0 chr6 68000871 68000969 -81516068 + B3A SINE B2 1 100 -98 1 1103 437 254 56 0 chr6 68000972 68000998 -81516039 - B2_Mm1a SINE B2 -23 170 141 2 1103 465 34 0 0 chr6 68000998 68001057 -81515980 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1103 574 211 2 0 chr6 68001057 68001172 -81515865 - B2_Mm2 SINE B2 -53 140 21 2 1103 751 288 44 5 chr6 68003804 68004010 -81513027 + B3 SINE B2 3 216 0 4 1103 1390 188 82 3 chr6 68004540 68004833 -81512204 + Lx2 LINE L1 6679 6994 -3 5 1103 381 365 81 6 chr6 68007214 68007374 -81509663 + B3A SINE B2 2 173 -25 6 1103 650 142 38 0 chr6 68007368 68007474 -81509563 - B2_Mm2 SINE B2 -65 130 21 7 1103 1675 100 16 16 chr6 68007548 68007802 -81509235 - L1_Mus2 LINE L1 0 6566 6313 8 1103 2568 276 58 53 chr6 68008216 68009388 -81507649 - RLTR42-int LTR ERVK -340 5182 4005 9 1103 302 239 91 0 chr6 68009445 68009533 -81507504 - RLTR42-int LTR ERVK -2547 2975 2880 9 1103 193 75 0 48 chr6 68009807 68009849 -81507188 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1 1103 21 0 0 0 chr6 68011455 68011476 -81505561 + AT_rich Low_complexity Low_complexity 1 21 0 1 1103 419 314 97 5 chr6 68011597 68011783 -81505254 - RMER5 LTR ERV1 -11 523 321 1 1103 489 241 102 98 chr6 68011842 68012077 -81504960 - RMER5 LTR ERV1 -290 244 9 1 1103 5809 138 12 6 chr6 68012291 68013238 -81503799 - RMER17B LTR ERVK -6 952 1 1 1103 534 103 0 0 chr6 68013245 68013323 -81503714 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1103 34 0 0 0 chr6 68013886 68013920 -81503117 + AT_rich Low_complexity Low_complexity 1 34 0 1 1103 491 425 39 35 chr6 68014230 68014766 -81502271 + MTE-int LTR MaLR 831 1368 -212 1 1103 257 75 0 24 chr6 68015225 68015266 -81501771 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1103 210 37 0 0 chr6 68017770 68017797 -81499240 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1 1103 971 145 6 6 chr6 68017797 68017957 -81499080 - B2_Mm2 SINE B2 -34 161 2 1 1103 2624 222 31 8 chr6 68018062 68019306 -81497731 + L1VL4 LINE L1 642 1910 -2002 2 1103 438 36 0 0 chr6 68019758 68019814 -81497223 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1103 234 231 0 0 chr6 68021119 68021184 -81495853 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1103 11940 101 8 38 chr6 68021376 68023683 -81493354 - L1_Mus2 LINE L1 0 6566 4325 2 1103 1103 82 0 0 chr6 68023683 68023829 -81493208 - B1_Mus1 SINE Alu -2 146 1 2 1103 11940 115 11 65 chr6 68023829 68024255 -81492782 - L1_Mus2 LINE L1 -1559 4324 3942 2 1103 24 0 0 0 chr6 68024578 68024602 -81492435 + AT_rich Low_complexity Low_complexity 1 24 0 2 1103 1164 275 90 44 chr6 68024974 68025476 -81491561 - RMER5 LTR ERV1 -1 533 9 2 1103 421 283 10 10 chr6 68025563 68025663 -81491374 + B3A SINE B2 1 100 -98 2 1103 22 0 0 0 chr6 68026274 68026296 -81490741 + AT_rich Low_complexity Low_complexity 1 22 0 2 1104 21 36 0 0 chr6 68026381 68026409 -81490628 + AT_rich Low_complexity Low_complexity 1 28 0 2 1104 377 264 18 45 chr6 68026692 68026803 -81490234 + MTE-int LTR MaLR 831 938 -642 3 1104 333 99 27 27 chr6 68026816 68026889 -81490148 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 3 1104 282 375 86 69 chr6 68026942 68027079 -81489958 + MTE-int LTR MaLR 1009 1161 -419 3 1104 421 32 16 16 chr6 68027079 68027143 -81489894 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 3 1104 910 88 0 87 chr6 68027143 68027293 -81489744 - B1_Mm SINE Alu -9 138 2 3 1104 282 375 86 69 chr6 68027293 68027503 -81489534 + MTE-int LTR MaLR 1162 1362 -218 3 1104 329 333 58 24 chr6 68027633 68027839 -81489198 + MTE-int LTR MaLR 1358 1570 -10 3 1104 214 191 0 0 chr6 68028143 68028185 -81488852 + A-rich Low_complexity Low_complexity 1 42 0 3 1104 6883 127 38 12 chr6 68028362 68029309 -81487728 - Lx3_Mus LINE L1 0 7009 6051 3 1104 360 0 0 0 chr6 68029309 68029349 -81487688 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 3 1104 6883 127 38 12 chr6 68029349 68029540 -81487497 - Lx3_Mus LINE L1 -959 6050 5843 3 1104 6803 102 22 4 chr6 68029540 68030546 -81486491 + Lx8 LINE L1 4846 5864 -1609 3 1104 675 295 24 5 chr6 68033564 68033775 -81483262 + B3 SINE B2 2 216 0 3 1104 31 26 0 0 chr6 68034698 68034736 -81482301 + AT_rich Low_complexity Low_complexity 1 38 0 3 1104 2153 284 109 23 chr6 68034753 68035734 -81481303 - Lx6 LINE L1 -27 7433 6151 4 1104 3847 235 37 11 chr6 68035728 68036754 -81480283 - Lx6 LINE L1 -42 5835 4783 4 1104 5480 60 41 0 chr6 68036764 68037470 -81479567 - L1Md_F2 LINE L1 -12 6570 5836 4 1104 899 247 48 102 chr6 68037956 68038147 -81478890 - MTD LTR MaLR -24 395 206 4 1104 3298 101 2 36 chr6 68038147 68038640 -81478397 - L1_Mus2 LINE L1 0 6566 6091 4 1104 899 247 48 102 chr6 68038640 68038782 -81478255 - MTD LTR MaLR -214 205 80 4 1104 303 308 63 55 chr6 68038758 68038885 -81478152 + RSINE1 SINE B4 38 165 0 4 1104 344 135 0 0 chr6 68039025 68039077 -81477960 - Lx4B LINE L1 -554 6504 6453 4 1104 3078 132 15 5 chr6 68039077 68039580 -81477457 - RLTR1C LTR ERV1 0 507 1 4 1104 364 170 0 0 chr6 68039580 68039651 -81477386 - Lx4B LINE L1 -602 6456 6362 4 1104 8062 110 41 7 chr6 68039988 68041293 -81475744 - L1_Mur1 LINE L1 -1905 3981 2633 4 1104 1112 183 37 24 chr6 68041294 68041315 -81475722 + Lx3_Mus LINE L1 5887 5907 -1102 4 1104 351 0 0 0 chr6 68041315 68041354 -81475683 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1104 1112 183 37 24 chr6 68041354 68041578 -81475459 + Lx3_Mus LINE L1 5908 6134 -875 4 1104 19807 69 9 2 chr6 68041816 68045202 -81471835 + L1Md_A LINE L1 452 3817 -2066 5 1104 924 188 6 17 chr6 68045874 68046053 -81470984 + B2_Mm2 SINE B2 1 177 -18 5 1104 414 0 0 0 chr6 68046066 68046112 -81470925 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1104 1081 71 0 0 chr6 68046114 68046254 -81470783 - B1_Mm SINE Alu -7 140 1 5 1104 1951 130 199 45 chr6 68046456 68046874 -81470163 - LTRIS_Mm LTR ERV1 0 482 1 5 1104 3947 167 11 7 chr6 68047348 68048055 -81468982 - Lx2 LINE L1 0 6997 6288 5 1104 1930 166 3 3 chr6 68048055 68048376 -81468661 - ORR1A2 LTR MaLR 0 327 7 5 1104 1822 175 22 14 chr6 68048383 68048742 -81468295 - Lx2 LINE L1 -706 6291 5930 5 1104 1365 40 0 0 chr6 68049115 68049289 -81467748 + L1Md_A LINE L1 6409 6582 0 5 1104 1742 299 59 46 chr6 68051225 68052780 -81464257 - RMER1A Other Other 0 1066 1 5 1104 1094 95 0 22 chr6 68053445 68053628 -81463409 + (TTC)n Simple_repeat Simple_repeat 2 180 0 5 1104 522 158 0 12 chr6 68053847 68053859 -81463178 + L1_Mus1 LINE L1 6227 6238 -329 6 1104 1720 75 4 28 chr6 68053859 68054106 -81462931 - L1_Mus2 LINE L1 -1 6565 6325 6 1104 522 158 0 12 chr6 68054106 68054176 -81462861 + L1_Mus1 LINE L1 6239 6308 -259 6 1104 243 125 0 0 chr6 68054251 68054291 -81462746 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 1104 722 350 39 25 chr6 68054352 68054786 -81462251 - RMER5 LTR ERV1 0 534 95 6 1104 22 0 0 0 chr6 68055139 68055161 -81461876 + AT_rich Low_complexity Low_complexity 1 22 0 6 1104 613 309 21 11 chr6 68056926 68057116 -81459921 + B3 SINE B2 4 195 -21 6 1104 624 170 8 0 chr6 68057108 68057221 -81459816 + B1_Mur4 SINE Alu 33 150 0 6 1104 243 103 0 0 chr6 68057727 68057766 -81459271 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1104 474 283 46 23 chr6 68058483 68058613 -81458424 - ETnERV2-int LTR ERVK -204 7202 7070 6 1104 377 67 33 0 chr6 68058807 68058867 -81458170 + (TTTTG)n Simple_repeat Simple_repeat 5 66 0 6 1104 2801 145 32 16 chr6 68059886 68060390 -81456647 + Lx3_Mus LINE L1 6498 7009 0 7 1104 457 395 40 25 chr6 68060728 68061006 -81456031 + MTE-int LTR MaLR 831 1112 -468 7 1104 34714 47 5 16 chr6 68061023 68066229 -81450808 + L1Md_F LINE L1 487 5633 -250 7 1104 1014 257 26 42 chr6 68066345 68066658 -81450379 + Lx5 LINE L1 6743 7050 0 7 1104 2377 144 8 5 chr6 68067002 68067392 -81449645 - Lx LINE L1 -10 6644 6254 7 1104 21 0 0 0 chr6 68067519 68067540 -81449497 + AT_rich Low_complexity Low_complexity 1 21 0 7 1104 858 244 0 0 chr6 68067658 68067826 -81449211 - MTC LTR MaLR -54 367 200 7 1104 1094 139 0 37 chr6 68067916 68068057 -81448980 + Lx3B LINE L1 6443 6577 -396 7 1104 2766 101 14 2 chr6 68068057 68068473 -81448564 + BGLII LTR ERVK 1 421 0 7 1104 1094 139 0 37 chr6 68068473 68068518 -81448519 + Lx3B LINE L1 6578 6622 -351 7 1104 627 210 32 0 chr6 68068521 68068645 -81448392 - MTC LTR MaLR -212 209 82 7 1104 21 36 0 0 chr6 68068645 68068673 -81448364 + AT_rich Low_complexity Low_complexity 1 28 0 7 1104 225 309 98 12 chr6 68069929 68070011 -81447026 + RMER12 LTR ERVK 1 89 -1233 8 1104 1178 233 21 51 chr6 68070493 68070868 -81446169 - RLTR18 LTR ERVK -133 379 23 8 1104 1231 160 42 35 chr6 68072215 68072474 -81444563 - Lx LINE L1 -4 6650 6390 8 1104 5071 131 22 27 chr6 68072474 68073726 -81443311 - L1_Mus3 LINE L1 -547 6091 4866 8 1104 703 188 78 0 chr6 68073721 68073875 -81443162 - L1_Mur2 LINE L1 -277 5600 5435 8 1104 9267 68 4 1 chr6 68073873 68075876 -81441161 - L1Md_F2 LINE L1 -1 6581 4574 8 1104 15638 97 6 9 chr6 68075870 68077702 -81439335 - L1Md_F2 LINE L1 -2099 3784 1968 8 1104 304 22 44 0 chr6 68077702 68077747 -81439290 + (TTG)n Simple_repeat Simple_repeat 2 48 0 8 1104 15638 97 6 9 chr6 68077747 68078369 -81438668 - L1Md_F2 LINE L1 -3916 1967 1337 8 1104 7377 58 11 2 chr6 68078360 68079877 -81437160 - L1Md_F2 LINE L1 -1 6581 5054 8 1104 8061 103 9 8 chr6 68079874 68081431 -81435606 - L1Md_F2 LINE L1 -5382 1342 98 8 1104 459 0 0 0 chr6 68081458 68081509 -81435528 + (TC)n Simple_repeat Simple_repeat 2 52 0 8 1104 285 256 88 31 chr6 68081518 68081542 -81435495 - L1_Mur2 LINE L1 -2499 5496 5471 8 1104 1146 75 7 0 chr6 68081542 68081688 -81435349 - B1_Mus1 SINE Alu 0 148 2 9 1104 12086 157 44 13 chr6 68081688 68083846 -81433191 - L1_Mur2 LINE L1 -2525 5470 3221 8 1104 1398 30 0 0 chr6 68083846 68084013 -81433024 + (TCTCCC)n Simple_repeat Simple_repeat 3 169 0 9 1104 12086 156 43 12 chr6 68084013 68084432 -81432605 - L1_Mur2 LINE L1 -2657 3220 2764 8 1104 260 27 27 0 chr6 68084663 68084700 -81432337 + (TA)n Simple_repeat Simple_repeat 1 38 0 9 1104 468 139 0 0 chr6 68084855 68084934 -81432103 + (TA)n Simple_repeat Simple_repeat 2 80 0 9 1104 525 121 0 0 chr6 68085088 68085171 -81431866 + (TA)n Simple_repeat Simple_repeat 2 84 0 9 1104 486 120 0 0 chr6 68085325 68085400 -81431637 + (TA)n Simple_repeat Simple_repeat 2 76 0 9 1104 1057 119 0 0 chr6 68085671 68085814 -81431223 + B1_Mus1 SINE Alu 1 143 -5 9 1104 352 335 109 16 chr6 68086142 68086455 -81430582 + L1MB8 LINE L1 5627 5968 -210 9 1104 4409 12 0 12 chr6 68086455 68086954 -81430083 - MT2_Mm LTR ERVL 0 493 1 9 1104 302 0 0 0 chr6 68086954 68086992 -81430045 - MERVL-int LTR ERVL 0 5485 5448 9 1104 353 157 58 46 chr6 68086992 68087079 -81429958 - ORR1A3-int LTR MaLR -1323 640 553 9 1104 45175 15 7 0 chr6 68087083 68092402 -81424635 - MERVL-int LTR ERVL -130 5355 1 9 1104 4409 12 0 12 chr6 68092402 68092901 -81424136 - MT2_Mm LTR ERVL 0 493 1 9 1104 31 88 0 0 chr6 68092962 68093042 -81423995 + AT_rich Low_complexity Low_complexity 1 80 0 1 1104 380 147 23 8 chr6 68093394 68093518 -81423519 + GA-rich Low_complexity Low_complexity 1 125 0 1 1104 6597 125 12 12 chr6 68093625 68095185 -81421852 + L1_Mus3 LINE L1 5079 6638 0 1 1104 364 250 42 0 chr6 68097379 68097475 -81419562 + Lx8 LINE L1 6841 6940 -533 1 1104 284 235 106 56 chr6 68097964 68098144 -81418893 + L1M2 LINE L1 5185 5373 -770 1 1104 366 101 0 0 chr6 68098161 68098230 -81418807 - L1Md_F2 LINE L1 0 6582 6514 1 1104 642 258 23 70 chr6 68098367 68098538 -81418499 + B3 SINE B2 1 163 -53 1 1104 458 70 14 0 chr6 68098548 68098619 -81418418 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1104 21 0 0 0 chr6 68098619 68098640 -81418397 + AT_rich Low_complexity Low_complexity 1 21 0 1 1104 368 250 0 0 chr6 68098703 68098775 -81418262 + PB1D9 SINE Alu 46 117 -3 1 1104 958 308 12 12 chr6 68098819 68099154 -81417883 + RMER1B Other Other 1 335 -731 1 1104 399 326 15 0 chr6 68099175 68099310 -81417727 + RMER1A Other Other 95 231 -799 1 1104 5927 150 9 30 chr6 68099291 68100443 -81416594 + Lx LINE L1 5374 6519 -135 1 1104 2127 76 102 3 chr6 68100443 68100758 -81416279 - ORR1A0 LTR MaLR 0 346 1 1 1104 5927 144 6 36 chr6 68100758 68100909 -81416128 + Lx LINE L1 6520 6649 -5 1 1104 2008 270 76 14 chr6 68100948 68101529 -81415508 + RMER1B Other Other 9 944 -122 1 1104 330 218 26 60 chr6 68103372 68103387 -81413650 - Lx8 LINE L1 -437 7036 7022 1 1104 964 144 0 0 chr6 68103387 68103533 -81413504 - B1_Mus1 SINE Alu -2 146 1 1 1104 330 218 26 60 chr6 68103533 68103634 -81413403 - Lx8 LINE L1 -452 7021 6924 1 1104 3286 86 0 0 chr6 68103715 68104187 -81412850 - L1_Mus1 LINE L1 0 6567 6132 1 1104 3672 66 8 0 chr6 68104187 68104689 -81412348 + L1_Mus1 LINE L1 5621 6126 -441 1 1104 801 333 22 42 chr6 68104688 68105192 -81411845 - Lx8 LINE L1 -618 6855 6362 1 1104 401 343 168 5 chr6 68105250 68105449 -81411588 - ORR1D2 LTR MaLR -88 282 51 1 1104 1907 129 52 7 chr6 68105449 68105754 -81411283 + ORR1A2 LTR MaLR 1 319 -8 1 1104 256 351 17 28 chr6 68105812 68105991 -81411046 - Lx8 LINE L1 -1107 6366 6190 1 1104 21 36 0 0 chr6 68106014 68106042 -81410995 + AT_rich Low_complexity Low_complexity 1 28 0 1 1104 3744 146 15 31 chr6 68106061 68106728 -81410309 - Lx LINE L1 0 6654 5999 1 1104 245 328 72 51 chr6 68107472 68107610 -81409427 - RMER20B LTR ERVK -191 436 296 1 1104 1811 136 54 22 chr6 68107919 68108235 -81408802 - ORR1A2 LTR MaLR -1 326 1 1 1104 366 23 0 0 chr6 68108548 68108591 -81408446 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1104 871 181 0 0 chr6 68108591 68108735 -81408302 - B1_Mus1 SINE Alu -4 144 1 1 1104 5519 34 3 0 chr6 68108758 68109412 -81407625 - L1Md_F3 LINE L1 -12 6572 5917 1 1104 809 207 11 28 chr6 68109416 68109595 -81407442 + B2_Mm2 SINE B2 2 177 -18 1 1104 31 0 0 0 chr6 68110111 68110142 -81406895 + AT_rich Low_complexity Low_complexity 1 31 0 1 1104 2251 142 39 39 chr6 68110172 68110583 -81406454 - L1_Mus4 LINE L1 -1 6635 6225 1 1104 1026 235 79 39 chr6 68110617 68110977 -81406060 - RLTR18 LTR ERVK -131 485 14 1 1104 322 232 157 34 chr6 68112050 68112197 -81404840 - L1M2 LINE L1 -3709 2434 2270 1 1104 365 353 25 41 chr6 68112352 68112597 -81404440 - Lx8 LINE L1 -920 6553 6313 1 1104 292 83 50 0 chr6 68112984 68113044 -81403993 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 1 1104 573 55 0 0 chr6 68113149 68113222 -81403815 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 1 1104 2381 136 19 24 chr6 68113222 68113637 -81403400 - RMER17A LTR ERVK -338 413 1 1 1104 418 288 73 50 chr6 68113637 68113814 -81403223 - RMER5 LTR ERV1 -259 275 95 1 1104 887 67 0 0 chr6 68115530 68115650 -81401387 - L1Md_F2 LINE L1 -334 6248 6129 1 1104 4738 156 24 9 chr6 68115655 68116498 -81400539 + RLTR13A LTR ERVK 1 855 0 1 1104 5600 117 1 0 chr6 68116498 68117368 -81399669 - L1_Mm LINE L1 -169 5714 4844 1 1104 37653 27 0 4 chr6 68117364 68122888 -81394149 - L1Md_T LINE L1 -1 6581 1098 1 1104 3088 135 11 4 chr6 68122884 68123419 -81393618 - L1_Mm LINE L1 -1022 4861 4323 1 1104 448 95 28 28 chr6 68123598 68123706 -81393331 + T-rich Low_complexity Low_complexity 1 108 0 1 1104 982 123 0 0 chr6 68123706 68123852 -81393185 - B1_Mus1 SINE Alu -2 146 1 1 1104 25 31 0 0 chr6 68123853 68123885 -81393152 + AT_rich Low_complexity Low_complexity 1 32 0 1 1104 26 64 0 0 chr6 68124094 68124141 -81392896 + AT_rich Low_complexity Low_complexity 1 47 0 1 1104 3222 169 5 3 chr6 68124421 68125014 -81392023 - Lx3_Mus LINE L1 -142 6867 6274 1 1104 3465 126 20 42 chr6 68124998 68125819 -81391218 + Lx3_Mus LINE L1 5504 6296 -713 1 1104 2919 212 108 21 chr6 68126199 68126913 -81390124 - RMER19B LTR ERVK 0 902 127 1 1104 519 252 48 24 chr6 68126915 68127041 -81389996 + ETnERV2-int LTR ERVK 7074 7202 -204 1 1104 414 209 91 154 chr6 68127400 68127598 -81389439 - RMER19B LTR ERVK -748 154 1 1 1104 360 94 0 0 chr6 68127728 68127781 -81389256 + (T)n Simple_repeat Simple_repeat 1 53 0 1 1104 1138 88 0 0 chr6 68127787 68127934 -81389103 - B1_Mus1 SINE Alu 0 148 2 1 1104 286 323 109 36 chr6 68128082 68128220 -81388817 - RSINE1 SINE B4 0 165 18 1 1104 351 0 0 0 chr6 68129178 68129217 -81387820 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1104 1009 106 0 32 chr6 68129670 68129856 -81387181 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1104 817 255 80 0 chr6 68130772 68130984 -81386053 - RMER5 LTR ERV1 -78 456 228 1 1104 2557 175 23 11 chr6 68131723 68132243 -81384794 - RLTR11A2 LTR ERVK 0 527 2 1 1104 613 260 64 72 chr6 68132245 68132618 -81384419 - L1_Rod LINE L1 -2950 2897 2528 1 1104 945 195 0 0 chr6 68132902 68133097 -81383940 + L1_Mur1 LINE L1 2467 2661 -3225 1 1104 408 234 29 4 chr6 68133093 68133258 -81383779 + L1_Mur1 LINE L1 3201 3375 -539 1 1104 1367 143 27 4 chr6 68133247 68133506 -81383531 - L1_Mur2 LINE L1 -2173 3704 3440 1 1104 537 151 0 0 chr6 68133548 68133634 -81383403 + Lx4A LINE L1 5625 5710 -1348 1 1104 1555 232 45 23 chr6 68133632 68134187 -81382850 - L1_Rod LINE L1 -3847 2000 1434 1 1104 423 244 15 37 chr6 68134195 68134331 -81382706 - Lx3_Mus LINE L1 -13 6996 6864 1 1104 442 197 120 0 chr6 68134331 68134473 -81382564 - RMER3D-int LTR ERVK -32 2810 2652 1 1104 300 189 31 21 chr6 68134491 68134588 -81382449 + L1_Mur2 LINE L1 3248 3345 -2532 1 1104 1467 144 4 4 chr6 68134597 68134862 -81382175 - L1_Mur2 LINE L1 -2173 3704 3440 1 1104 577 128 0 0 chr6 68134904 68134990 -81382047 + Lx4A LINE L1 5625 5710 -1348 1 1104 968 245 18 25 chr6 68134988 68135314 -81381723 - L1_Rod LINE L1 -3847 2000 1677 1 1104 1760 158 19 19 chr6 68135366 68135682 -81381355 - Lx3_Mus LINE L1 -13 6996 6681 1 1104 2451 138 19 5 chr6 68135682 68136097 -81380940 - BGLII LTR ERVK 0 421 1 1 1104 1521 229 124 35 chr6 68136099 68136941 -81380096 - RMER3D-int LTR ERVK -1 2841 1925 1 1104 2049 211 93 58 chr6 68136960 68137603 -81379434 - RMER3D-int LTR ERVK -1163 1679 1014 1 1104 241 83 41 20 chr6 68137648 68137697 -81379340 + (TTTCC)n Simple_repeat Simple_repeat 1 50 0 1 1104 3645 44 5 2 chr6 68137697 68138132 -81378905 - RLTR10C LTR ERVK 0 436 1 1 1104 34597 25 22 10 chr6 68138132 68143103 -81373934 - MMERVK10C-int LTR ERVK 0 7581 2554 1 1104 376 125 91 0 chr6 68143086 68143174 -81373863 - MMERVK10C-int LTR ERVK -5601 1980 1885 1 1104 306 158 0 0 chr6 68143179 68143236 -81373801 - MMERVK10C-int LTR ERVK -4261 1145 1089 1 1104 699 206 215 54 chr6 68143241 68143614 -81373423 - MMERVK10C-int LTR ERVK -4795 611 312 1 1104 841 135 4 165 chr6 68143702 68143969 -81373068 - MMERVK10C-int LTR ERVK -6629 952 729 1 1104 2514 73 3 0 chr6 68143967 68144309 -81372728 - MMERVK10C-int LTR ERVK -7238 343 1 1 1104 3658 42 5 2 chr6 68144309 68144744 -81372293 - RLTR10C LTR ERVK 0 436 1 1 1104 1335 22 0 32 chr6 68144745 68144931 -81372106 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 1 1104 185 254 61 106 chr6 68144939 68145005 -81372032 - MIRb SINE MIR -177 91 29 1 1104 216 97 0 0 chr6 68145385 68145416 -81371621 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 1 1104 450 241 88 41 chr6 68145567 68145579 -81371458 + ID SINE ID 70 81 -143 1 1104 297 0 0 0 chr6 68145579 68145612 -81371425 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1104 718 159 114 0 chr6 68145614 68145746 -81371291 + B1_Mus1 SINE Alu 1 147 -1 1 1104 200 93 0 44 chr6 68145749 68145794 -81371243 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1104 460 354 14 23 chr6 68145799 68146013 -81371024 + B3 SINE B2 2 213 -3 1 1104 1927 270 64 26 chr6 68146035 68146723 -81370314 + RLTR22_Mur LTR ERVK 1 714 -1134 1 1104 1016 218 69 124 chr6 68146751 68147185 -81369852 + RLTR22_Mur LTR ERVK 969 1378 -470 1 1104 238 329 88 50 chr6 68147253 68147413 -81369624 + RMER12 LTR ERVK 1019 1184 -138 1 1104 927 155 0 20 chr6 68147561 68147712 -81369325 + B1_Mus1 SINE Alu 1 148 0 1 1104 28 0 0 0 chr6 68147712 68147740 -81369297 + AT_rich Low_complexity Low_complexity 1 28 0 1 1104 461 291 42 55 chr6 68147740 68148052 -81368985 - MYSERV6-int LTR ERVK -8104 855 548 1 1104 266 62 61 30 chr6 68148108 68148174 -81368863 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 1 1104 549 275 64 102 chr6 68148530 68148903 -81368134 - RLTR15 LTR ERVK 0 359 1 1 1104 1852 124 0 7 chr6 68149006 68149314 -81367723 - L1_Mm LINE L1 -1040 4843 4538 1 1104 6541 94 2 1 chr6 68149316 68150292 -81366745 + L1_Mus1 LINE L1 5542 6518 -49 1 1104 623 176 8 0 chr6 68150326 68150451 -81366586 + GA-rich Low_complexity Low_complexity 3 128 0 1 1104 313 276 68 5 chr6 68151390 68151594 -81365443 + Tigger5 DNA MER2_type 2167 2391 -15 1 1104 683 71 10 0 chr6 68153384 68153482 -81363555 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 1104 287 386 78 44 chr6 68153999 68154270 -81362767 + MER70B LTR ERVL 20 299 -279 1 1104 2538 238 50 74 chr6 68154306 68155152 -81361885 - RMER12 LTR ERVK -88 1720 422 1 1104 6863 82 13 2 chr6 68155206 68156411 -81360626 - L1Md_F2 LINE L1 -7 6575 5357 1 1104 6545 56 1 2 chr6 68156407 68157262 -81359775 - L1Md_F2 LINE L1 -12 6570 5717 1 17 11707 88 26 4 chr6 68157246 68159044 -81357993 - L1Md_F2 LINE L1 -550 5333 3498 1 1105 272 27 0 0 chr6 68159037 68159074 -81357963 - L1Md_F2 LINE L1 -2552 3331 3295 1 1105 2538 140 59 26 chr6 68159049 68159540 -81357497 - L1Md_F LINE L1 -5630 889 383 1 1105 450 132 26 0 chr6 68159540 68159616 -81357421 - L1VL1 LINE L1 -6156 266 189 1 1105 1842 189 50 72 chr6 68159617 68160061 -81356976 - RMER12 LTR ERVK -888 434 1 1 1105 405 0 0 0 chr6 68160162 68160207 -81356830 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1105 270 0 0 0 chr6 68160207 68160236 -81356801 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1105 473 325 105 16 chr6 68160403 68160594 -81356443 + B3 SINE B2 6 213 -3 1 1105 21 0 0 0 chr6 68160932 68160953 -81356084 + AT_rich Low_complexity Low_complexity 1 21 0 1 1105 3528 13 5 0 chr6 68161296 68161690 -81355347 - MTA_Mm LTR MaLR 0 396 1 2 1105 9059 33 6 3 chr6 68161690 68162785 -81354252 - MTA_Mm-int LTR MaLR 0 1098 1 2 1105 3500 15 5 0 chr6 68162785 68163179 -81353858 - MTA_Mm LTR MaLR 0 396 1 2 1105 21 0 0 0 chr6 68166165 68166186 -81350851 + AT_rich Low_complexity Low_complexity 1 21 0 2 1105 2834 89 2 10 chr6 68167352 68167749 -81349288 - L1_Mus2 LINE L1 0 6566 6173 2 1105 24 32 0 0 chr6 68168280 68168311 -81348726 + AT_rich Low_complexity Low_complexity 1 31 0 2 1105 35 92 0 0 chr6 68168544 68168642 -81348395 + AT_rich Low_complexity Low_complexity 1 98 0 2 1105 337 261 129 43 chr6 68169317 68169457 -81347580 - RSINE1 SINE B4 -2 163 12 2 1105 213 275 14 0 chr6 68170803 68170872 -81346165 + GA-rich Low_complexity Low_complexity 3 72 0 2 1105 276 30 0 0 chr6 68171390 68171423 -81345614 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 1105 3510 47 5 0 chr6 68171430 68171856 -81345181 + L1Md_F3 LINE L1 6143 6570 -14 2 1105 31972 51 12 3 chr6 68171864 68177031 -81340006 + L1Md_T LINE L1 278 5588 -298 2 1105 8077 47 8 0 chr6 68177032 68178018 -81339019 + L1Md_T LINE L1 5590 6583 -2 2 1105 408 268 5 138 chr6 68178436 68178631 -81338406 - RMER5 LTR ERV1 -78 456 288 2 1105 23 0 0 0 chr6 68179072 68179095 -81337942 + AT_rich Low_complexity Low_complexity 1 23 0 2 1105 218 209 0 11 chr6 68179974 68179981 -81337056 + (TA)n Simple_repeat Simple_repeat 1 7 0 2 1105 414 39 0 0 chr6 68179981 68180033 -81337004 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1105 218 209 0 11 chr6 68180033 68180112 -81336925 + (TA)n Simple_repeat Simple_repeat 1 78 0 2 1105 35465 48 2 3 chr6 68180151 68186322 -81330715 - L1Md_T LINE L1 0 6585 321 2 1105 23 0 0 0 chr6 68186384 68186407 -81330630 + AT_rich Low_complexity Low_complexity 1 23 0 2 1105 7454 130 59 10 chr6 68186544 68187571 -81329466 - Lx3_Mus LINE L1 -6 7003 5925 2 1105 315 0 0 0 chr6 68187571 68187606 -81329431 + (TTA)n Simple_repeat Simple_repeat 1 35 0 2 1105 24681 111 13 37 chr6 68187606 68189646 -81327391 - Lx3_Mus LINE L1 -1085 5924 3978 2 1105 2729 69 0 6 chr6 68189646 68189994 -81327043 - ORR1A1 LTR MaLR 0 346 1 2 1105 24681 111 12 38 chr6 68189994 68192378 -81324659 - Lx3_Mus LINE L1 -1909 3977 1600 2 1105 10631 63 2 2 chr6 68192378 68193706 -81323331 + RLTR3_Mm LTR ERVK 1 1328 0 2 1105 60562 26 1 0 chr6 68193706 68200951 -81316086 + MMTV-int LTR ERVK 1 7253 0 2 1105 10631 63 2 2 chr6 68200951 68202279 -81314758 + RLTR3_Mm LTR ERVK 1 1328 0 2 1105 2308 127 104 16 chr6 68202279 68203046 -81313991 - Lx3_Mus LINE L1 -4281 1605 771 2 1105 677 418 29 12 chr6 68203098 68203580 -81313457 + MTE-int LTR MaLR 851 1340 -240 2 1105 234 164 0 47 chr6 68204060 68204124 -81312913 + T-rich Low_complexity Low_complexity 5 65 0 2 1105 2440 46 7 0 chr6 68205069 68205372 -81311665 - L1Md_F2 LINE L1 -1 6581 6277 2 1105 343 281 6 18 chr6 68207765 68207863 -81309174 + B3A SINE B2 3 98 -97 2 1105 363 23 0 0 chr6 68207863 68207907 -81309130 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2 1105 253 283 26 78 chr6 68207907 68207923 -81309114 + B2_Mm2 SINE B2 99 111 -84 2 1105 646 200 0 24 chr6 68207970 68208093 -81308944 - B2_Mm2 SINE B2 -65 130 11 2 1105 222 354 51 34 chr6 68208082 68208199 -81308838 + B3 SINE B2 88 206 -10 2 1105 5696 65 11 2 chr6 68208613 68209400 -81307637 + L1Md_F2 LINE L1 4793 5586 -297 2 1105 7586 64 8 2 chr6 68209401 68210377 -81306660 + L1Md_F2 LINE L1 5588 6569 -13 2 1105 15522 198 25 37 chr6 68210901 68215362 -81301675 + Lx5 LINE L1 2077 6517 -533 2 1105 1401 210 59 59 chr6 68215368 68215777 -81301260 + Lx5 LINE L1 6630 7038 -12 2 1105 876 279 32 32 chr6 68215802 68216110 -81300927 + Lx5 LINE L1 6743 7050 0 2 1105 2322 145 17 20 chr6 68216438 68216840 -81300197 - Lx LINE L1 0 6654 6254 2 1105 911 231 0 11 chr6 68217096 68217280 -81299757 - MTC LTR MaLR -50 371 190 2 1105 1126 128 0 37 chr6 68217359 68217500 -81299537 + Lx3B LINE L1 6443 6583 -390 2 1105 2777 108 12 0 chr6 68217500 68217916 -81299121 + BGLII LTR ERVK 1 421 0 2 1105 1126 128 0 37 chr6 68217916 68217961 -81299076 + Lx3B LINE L1 6584 6622 -351 2 1105 618 205 33 0 chr6 68217964 68218086 -81298951 - MTC LTR MaLR -212 209 84 2 1105 22 35 0 0 chr6 68218086 68218115 -81298922 + AT_rich Low_complexity Low_complexity 1 29 0 2 1105 242 274 16 16 chr6 68219371 68219434 -81297603 + RMER12 LTR ERVK 1 63 -1259 2 1105 1223 229 17 51 chr6 68219936 68220312 -81296725 - RLTR18 LTR ERVK -133 379 23 2 1105 1117 193 35 27 chr6 68221653 68221914 -81295123 - Lx LINE L1 -2 6652 6390 2 1105 5061 133 24 26 chr6 68221905 68223162 -81293875 - L1_Mus3 LINE L1 -539 6099 4866 2 1105 684 191 79 0 chr6 68223157 68223309 -81293728 - L1_Mur2 LINE L1 -277 5600 5437 2 1105 31427 85 6 9 chr6 68223310 68230134 -81286903 - L1Md_F2 LINE L1 -1 6581 98 2 1105 510 17 0 0 chr6 68230165 68230224 -81286813 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1105 322 255 85 19 chr6 68230231 68230244 -81286793 - L1_Mur2 LINE L1 -2512 5483 5471 2 1105 1148 75 7 0 chr6 68230244 68230390 -81286647 - B1_Mus1 SINE Alu 0 148 2 2 1105 12187 157 43 10 chr6 68230390 68232545 -81284492 - L1_Mur2 LINE L1 -2525 5470 3218 2 1105 906 52 0 0 chr6 68232545 68232661 -81284376 + (TCTCCC)n Simple_repeat Simple_repeat 6 121 0 2 1105 12187 156 43 10 chr6 68232661 68233079 -81283958 - L1_Mur2 LINE L1 -2660 3217 2764 2 1105 3063 27 0 16 chr6 68233279 68233652 -81283385 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1105 53364 19 17 1 chr6 68233652 68240022 -81277015 - IAPEz-int LTR ERVK 0 6481 8 2 1105 3063 27 0 16 chr6 68240022 68240395 -81276642 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1105 204 40 0 0 chr6 68240506 68240531 -81276506 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 1105 1045 112 0 14 chr6 68240802 68240947 -81276090 + B1_Mus1 SINE Alu 1 143 -5 2 1105 357 343 104 13 chr6 68241277 68241593 -81275444 + L1MB8 LINE L1 5627 5971 -207 2 1105 1059 97 0 0 chr6 68242107 68242283 -81274754 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 2 1105 528 194 0 0 chr6 68242286 68242415 -81274622 + CT-rich Low_complexity Low_complexity 3 131 0 2 1105 3031 173 23 9 chr6 68242548 68243274 -81273763 + L1_Mus3 LINE L1 559 1314 -5343 2 1105 1807 240 65 28 chr6 68243273 68243889 -81273148 - L1VL4 LINE L1 -5508 794 156 2 1105 197 173 58 0 chr6 68243976 68244028 -81273009 + GA-rich Low_complexity Low_complexity 3 57 0 2 1105 506 140 0 10 chr6 68244022 68244123 -81272914 + (GA)n Simple_repeat Simple_repeat 1 100 0 2 1105 6597 126 12 12 chr6 68244230 68245790 -81271247 + L1_Mus3 LINE L1 5079 6638 0 2 1105 312 276 35 0 chr6 68248030 68248117 -81268920 + Lx8 LINE L1 6851 6940 -533 2 1105 289 226 117 67 chr6 68248606 68248786 -81268251 + L1M2 LINE L1 5185 5373 -770 2 1105 642 258 23 70 chr6 68248936 68249107 -81267930 + B3 SINE B2 1 163 -53 2 1105 486 0 0 0 chr6 68249119 68249173 -81267864 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1105 28 0 0 0 chr6 68249187 68249215 -81267822 + AT_rich Low_complexity Low_complexity 1 28 0 2 1105 368 250 0 0 chr6 68249278 68249350 -81267687 + PB1D9 SINE Alu 46 117 -3 2 1105 1003 292 15 15 chr6 68249395 68249729 -81267308 + RMER1B Other Other 2 335 -731 2 1105 383 353 7 0 chr6 68249750 68249886 -81267151 + RMER1A Other Other 95 231 -799 2 1105 6103 147 11 18 chr6 68249867 68251012 -81266025 + Lx LINE L1 5374 6526 -128 2 1105 2102 80 105 3 chr6 68251012 68251326 -81265711 - ORR1A1 LTR MaLR 0 346 1 2 1105 6103 141 9 22 chr6 68251326 68251466 -81265571 + Lx LINE L1 6527 6650 -4 2 1105 2010 263 80 16 chr6 68251504 68252084 -81264953 + RMER1B Other Other 9 944 -122 2 1105 975 137 0 0 chr6 68253930 68254076 -81262961 - B1_Mus1 SINE Alu -2 146 1 2 1105 375 226 27 36 chr6 68254076 68254177 -81262860 - Lx8 LINE L1 -449 7024 6924 2 1105 3324 83 0 0 chr6 68254258 68254734 -81262303 - L1_Mus1 LINE L1 0 6567 6132 2 1105 3784 58 4 0 chr6 68254734 68255238 -81261799 + L1_Mus1 LINE L1 5621 6126 -441 2 1105 806 333 22 42 chr6 68255237 68255741 -81261296 - Lx8 LINE L1 -618 6855 6362 2 1105 410 357 99 0 chr6 68255830 68255998 -81261039 - ORR1D2 LTR MaLR -135 235 51 2 1105 1871 139 52 7 chr6 68255998 68256303 -81260734 + ORR1A2 LTR MaLR 1 319 -8 2 1105 21 36 0 0 chr6 68256563 68256591 -81260446 + AT_rich Low_complexity Low_complexity 1 28 0 2 1105 3794 139 23 20 chr6 68256609 68257263 -81259774 - Lx LINE L1 0 6654 5999 2 1105 298 306 152 24 chr6 68258029 68258193 -81258844 - RMER20B LTR ERVK -209 418 234 2 1105 1790 139 54 22 chr6 68258455 68258771 -81258266 - ORR1A2 LTR MaLR -1 326 1 2 1105 273 57 0 0 chr6 68259085 68259120 -81257917 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2 1105 885 174 0 0 chr6 68259120 68259264 -81257773 - B1_Mus1 SINE Alu -4 144 1 2 1105 5372 43 3 0 chr6 68259289 68259940 -81257097 - L1Md_F3 LINE L1 -15 6569 5917 2 1105 773 218 12 25 chr6 68259944 68260104 -81256933 + B2_Mm2 SINE B2 2 159 -36 2 1105 302 67 22 0 chr6 68260104 68260149 -81256888 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2 1105 31 0 0 0 chr6 68260642 68260673 -81256364 + AT_rich Low_complexity Low_complexity 1 31 0 2 1105 2766 113 7 0 chr6 68260703 68261110 -81255927 - L1_Mus4 LINE L1 -2 6634 6225 2 1105 1043 219 105 42 chr6 68261144 68261504 -81255533 - RLTR18 LTR ERVK -131 485 5 2 1105 343 370 12 21 chr6 68262995 68263235 -81253802 - Lx8 LINE L1 -920 6553 6316 2 1105 257 100 20 0 chr6 68263624 68263674 -81253363 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1105 694 156 7 7 chr6 68263779 68263915 -81253122 + GA-rich Low_complexity Low_complexity 2 137 0 2 1105 191 157 20 0 chr6 68264236 68264287 -81252750 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2 1105 3145 166 35 25 chr6 68264309 68264947 -81252090 - Lx3_Mus LINE L1 -89 6920 6277 2 1105 7364 126 12 7 chr6 68264934 68265754 -81251283 - Lx3_Mus LINE L1 -917 6092 5272 2 1105 5104 44 5 3 chr6 68265754 68266388 -81250649 - L1Md_F2 LINE L1 0 6582 5948 2 1105 7364 124 13 1 chr6 68266388 68266978 -81250059 - Lx3_Mus LINE L1 -615 5271 4679 2 1105 8716 96 7 131 chr6 68266978 68268807 -81248230 + Lx3_Mus LINE L1 3073 4675 -1211 2 1105 254 292 8 23 chr6 68268867 68269000 -81248037 - Lx7 LINE L1 -1852 5844 5714 2 1105 1410 178 15 0 chr6 68268996 68269265 -81247772 - Lx3B LINE L1 -525 6448 6176 2 1105 3909 144 28 2 chr6 68269257 68269989 -81247048 - Lx4A LINE L1 -750 6308 5545 2 1105 189 0 0 0 chr6 68269989 68270010 -81247027 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1105 2488 134 37 4 chr6 68270010 68270147 -81246890 - Lx4A LINE L1 -333 5544 5405 2 1105 2426 179 12 4 chr6 68270154 68270660 -81246377 + L1_Mur2 LINE L1 4815 5324 -553 2 1105 490 299 47 30 chr6 68270674 68270879 -81246158 - RMER1A Other Other -845 185 14 2 1105 1269 116 5 0 chr6 68270879 68271068 -81245969 - BGLII LTR ERVK -231 190 1 2 1105 2864 218 29 54 chr6 68271069 68272010 -81245027 - RMER3D-int LTR ERVK -1 2841 1925 2 1105 1994 202 136 52 chr6 68272028 68272645 -81244392 - RMER3D-int LTR ERVK -1163 1679 1011 2 1105 255 197 16 47 chr6 68272697 68272761 -81244276 - RMER3D-int LTR ERVK -2129 713 652 2 1105 489 154 44 0 chr6 68272773 68272864 -81244173 - RMER3D-int LTR ERVK -2259 583 489 2 1105 10035 226 27 28 chr6 68273058 68275742 -81241295 - MYSERV6-int LTR ERVK -4344 4615 1936 2 1105 740 209 22 11 chr6 68275742 68275926 -81241111 - MYSERV6-int LTR ERVK -5358 3601 3416 2 1105 405 102 0 0 chr6 68276851 68276910 -81240127 + (GGA)n Simple_repeat Simple_repeat 3 61 0 2 1105 640 67 22 0 chr6 68277843 68277933 -81239104 - RLTR10B2 LTR ERVK 0 365 274 3 1105 1383 28 0 16 chr6 68278037 68278220 -81238817 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1105 570 29 0 0 chr6 68278441 68278509 -81238528 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1105 6703 75 60 3 chr6 68278616 68279547 -81237490 + L1Md_F2 LINE L1 5587 6570 -12 3 1105 2675 72 3 0 chr6 68279894 68280241 -81236796 + L1_Mus1 LINE L1 6219 6566 -1 3 1105 3947 183 10 7 chr6 68280356 68281218 -81235819 + L1_Mur1 LINE L1 2395 3259 -2627 3 1105 4907 167 30 12 chr6 68281218 68282169 -81234868 + Lx3C LINE L1 6006 6974 -2 3 1105 252 407 17 0 chr6 68282987 68283105 -81233932 + MTEa LTR MaLR 1 120 -259 3 1105 543 108 6 23 chr6 68284005 68284105 -81232932 - L1Md_F3 LINE L1 -623 5961 5860 3 1105 330 344 31 8 chr6 68285755 68285884 -81231153 - RMER15 LTR ERVL -66 509 378 3 1105 533 160 9 0 chr6 68286006 68286112 -81230925 + (TA)n Simple_repeat Simple_repeat 1 107 0 3 1105 33 66 0 0 chr6 68286162 68286223 -81230814 + AT_rich Low_complexity Low_complexity 1 61 0 3 1105 23 0 0 0 chr6 68286655 68286678 -81230359 + AT_rich Low_complexity Low_complexity 1 23 0 3 1105 502 157 0 0 chr6 68286954 68287037 -81230000 - B2_Mm2 SINE B2 -27 168 86 3 1105 1500 142 45 4 chr6 68287037 68287306 -81229731 + Lx LINE L1 6372 6651 -3 3 1105 516 110 0 48 chr6 68287301 68287406 -81229631 + L1Md_F2 LINE L1 6471 6570 -12 3 1105 343 207 227 60 chr6 68287407 68287560 -81229477 + RLTR9E LTR ERVK 142 342 -95 3 1105 270 73 0 0 chr6 68287560 68287601 -81229436 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 3 1105 805 320 44 51 chr6 68287615 68287872 -81229165 - RMER5 LTR ERV1 -8 526 269 3 138 3955 134 13 121 chr6 68287872 68288710 -81228327 - RMER17A LTR ERVK -3 748 1 3 1106 805 320 44 51 chr6 68288710 68288887 -81228150 - RMER5 LTR ERV1 -266 268 95 3 1106 908 58 0 0 chr6 68290601 68290721 -81226316 - L1Md_F2 LINE L1 -334 6248 6129 3 1106 2666 128 0 5 chr6 68290719 68291149 -81225888 - L1_Mm LINE L1 -168 5715 5288 3 1106 7522 57 1 1 chr6 68291143 68292192 -81224845 - L1Md_F2 LINE L1 -2 6580 5532 3 1106 4513 66 3 6 chr6 68292187 68292808 -81224229 + L1Md_F2 LINE L1 4898 5516 -367 3 1106 6173 112 5 0 chr6 68292793 68293763 -81223274 - L1Md_F2 LINE L1 -586 5297 4323 3 1106 217 94 18 36 chr6 68293959 68294014 -81223023 + (TTTTTG)n Simple_repeat Simple_repeat 1 54 0 3 1106 1025 101 0 0 chr6 68294014 68294162 -81222875 - B1_Mus1 SINE Alu 0 148 1 3 1106 25 31 0 0 chr6 68294163 68294195 -81222842 + AT_rich Low_complexity Low_complexity 1 32 0 3 1106 27 62 0 0 chr6 68294404 68294452 -81222585 + AT_rich Low_complexity Low_complexity 1 48 0 3 1106 3348 154 5 3 chr6 68294732 68295325 -81221712 - Lx3_Mus LINE L1 -142 6867 6274 3 1106 3644 111 5 11 chr6 68295309 68295722 -81221315 + Lx3_Mus LINE L1 5504 5908 -1101 3 1106 207 0 0 0 chr6 68295722 68295745 -81221292 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1106 3644 141 39 23 chr6 68295745 68296116 -81220921 + Lx3_Mus LINE L1 5909 6296 -713 3 1106 3376 221 96 25 chr6 68296499 68297394 -81219643 - RMER19B LTR ERVK 0 902 1 3 1106 582 133 26 0 chr6 68297527 68297640 -81219397 + CT-rich Low_complexity Low_complexity 2 117 0 3 1106 1073 102 0 7 chr6 68297646 68297794 -81219243 - B1_Mus1 SINE Alu 0 148 2 3 1106 273 258 16 0 chr6 68298019 68298081 -81218956 - RSINE1 SINE B4 -85 80 18 3 1106 483 33 0 0 chr6 68299034 68299095 -81217942 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1106 650 128 8 0 chr6 68299548 68299665 -81217372 + (GGA)n Simple_repeat Simple_repeat 1 118 0 3 1106 805 251 85 5 chr6 68300580 68300792 -81216245 - RMER5 LTR ERV1 -78 456 228 3 1106 222 62 0 0 chr6 68300874 68300906 -81216131 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1106 1662 122 33 34 chr6 68301566 68301973 -81215064 - RLTR45 LTR ERVK -28 454 1 3 1106 582 158 26 96 chr6 68301974 68302166 -81214871 - RMER3D-int LTR ERVK -676 2166 2007 3 1106 1194 55 7 0 chr6 68302166 68302312 -81214725 - B1_Mm SINE Alu 0 147 1 3 1106 455 256 57 75 chr6 68302312 68302417 -81214620 - RMER3D-int LTR ERVK -923 1403 1297 3 1106 1888 223 18 62 chr6 68302427 68302976 -81214061 - RMER3D-int LTR ERVK -1163 1679 1155 3 1106 1019 51 11 54 chr6 68303130 68303281 -81213756 + (TTTCC)n Simple_repeat Simple_repeat 1 145 0 3 1106 1545 17 0 0 chr6 68303281 68303461 -81213576 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 3 1106 1019 51 11 54 chr6 68303461 68303494 -81213543 + (TTTCC)n Simple_repeat Simple_repeat 4 35 0 3 1106 535 128 38 9 chr6 68303513 68303626 -81213411 - RMER3D-int LTR ERVK -2259 583 489 3 1106 456 19 0 0 chr6 68304015 68304068 -81212969 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1106 718 148 0 0 chr6 68304259 68304374 -81212663 + B1_Mus1 SINE Alu 1 115 -33 3 1106 344 31 14 58 chr6 68304381 68304450 -81212587 + (CAAA)n Simple_repeat Simple_repeat 3 68 0 3 1106 494 324 24 28 chr6 68304455 68304668 -81212369 + B3 SINE B2 2 213 -3 3 1106 1785 278 66 25 chr6 68304690 68305376 -81211661 + RLTR22_Mur LTR ERVK 1 714 -1134 3 1106 715 207 111 114 chr6 68305409 68305742 -81211295 + RLTR22_Mur LTR ERVK 950 1281 -567 3 1106 180 0 0 0 chr6 68305742 68305762 -81211275 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1106 36301 40 1 2 chr6 68305798 68312653 -81204384 - L1Md_T LINE L1 0 6585 1 3 1106 439 234 54 0 chr6 68312655 68312766 -81204271 + RLTR22_Mur LTR ERVK 1262 1378 -470 3 1106 917 159 0 0 chr6 68313143 68313288 -81203749 + B1_Mus1 SINE Alu 4 148 0 3 1106 469 311 26 42 chr6 68313319 68313645 -81203392 - RMER6-int LTR ERVK -2138 1039 531 3 1106 7482 49 11 1 chr6 68313686 68313703 -81203334 - L1Md_F3 LINE L1 0 6584 6564 3 1106 441 0 0 0 chr6 68313703 68313752 -81203285 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1106 33753 75 7 6 chr6 68313752 68320092 -81196945 - L1Md_F3 LINE L1 -21 6563 239 3 1106 205 70 22 44 chr6 68320121 68320166 -81196871 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 1106 464 270 22 114 chr6 68320539 68320856 -81196181 - RLTR15 LTR ERVK -21 338 51 3 1106 210 37 0 0 chr6 68320857 68320884 -81196153 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1106 380 338 41 7 chr6 68321419 68321565 -81195472 - RSINE1 SINE B4 -11 154 4 3 1106 2933 96 2 2 chr6 68321834 68322262 -81194775 + L1_Mus1 LINE L1 6091 6518 -49 3 1106 1132 28 7 7 chr6 68322299 68322444 -81194593 + (GAA)n Simple_repeat Simple_repeat 2 146 0 3 1106 311 282 17 17 chr6 68323354 68323473 -81193564 + Tigger5 DNA MER2_type 2163 2281 -125 3 1106 21 0 0 0 chr6 68325026 68325047 -81191990 + AT_rich Low_complexity Low_complexity 1 21 0 3 1106 239 307 106 45 chr6 68325334 68325532 -81191505 + Tigger5 DNA MER2_type 2174 2383 -23 3 1106 310 379 67 21 chr6 68325663 68325857 -81191180 - ID_B1 SINE B4 -19 205 3 3 1106 342 0 0 0 chr6 68326694 68326732 -81190305 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1106 2463 252 42 65 chr6 68327554 68328398 -81188639 - RMER12 LTR ERVK -89 1719 422 3 1106 29390 110 21 48 chr6 68328452 68334994 -81182043 - L1Md_F2 LINE L1 -12 6570 218 3 1106 1942 188 8 113 chr6 68335000 68335485 -81181552 - RMER12 LTR ERVK -888 434 1 3 1106 414 0 0 0 chr6 68335571 68335617 -81181420 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1106 222 62 0 0 chr6 68335619 68335651 -81181386 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1106 400 342 111 0 chr6 68335819 68336000 -81181037 + B3 SINE B2 6 206 -10 3 1106 21 0 0 0 chr6 68336348 68336369 -81180668 + AT_rich Low_complexity Low_complexity 1 21 0 3 1106 209 217 0 0 chr6 68337466 68337512 -81179525 + A-rich Low_complexity Low_complexity 5 50 0 3 1106 21 0 0 0 chr6 68339969 68339990 -81177047 + AT_rich Low_complexity Low_complexity 1 21 0 3 1106 476 326 15 7 chr6 68340512 68340648 -81176389 - B3A SINE B2 -48 150 14 3 1106 459 92 0 0 chr6 68340843 68340908 -81176129 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1106 603 0 0 0 chr6 68340987 68341054 -81175983 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1106 257 355 35 7 chr6 68341597 68341739 -81175298 - Lx9 LINE L1 -269 7375 7230 3 1106 32 57 0 0 chr6 68341973 68342026 -81175011 + AT_rich Low_complexity Low_complexity 1 53 0 3 1106 1319 229 16 0 chr6 68342335 68342892 -81174145 + L1_Mur2 LINE L1 898 1523 -4354 3 1106 2598 248 24 7 chr6 68342929 68343543 -81173494 + Lx5 LINE L1 6423 7047 -3 3 1106 26 30 0 0 chr6 68344796 68344829 -81172208 + AT_rich Low_complexity Low_complexity 1 33 0 3 1106 523 289 111 42 chr6 68344923 68345140 -81171897 + MTD LTR MaLR 81 312 -107 3 1106 24 0 0 0 chr6 68347009 68347033 -81170004 + AT_rich Low_complexity Low_complexity 1 24 0 3 1106 944 68 0 8 chr6 68347302 68347436 -81169601 + (TTC)n Simple_repeat Simple_repeat 3 135 0 3 1106 33074 46 6 3 chr6 68348569 68354010 -81163027 + L1Md_Gf LINE L1 32 5589 -297 3 1106 8549 29 1 0 chr6 68354010 68355005 -81162032 + L1Md_T LINE L1 5587 6582 0 3 1106 3618 143 7 19 chr6 68355389 68355979 -81161058 - Lx LINE L1 -5 6649 6067 3 1106 306 317 72 57 chr6 68356349 68356543 -81160494 + L1M4 LINE L1 4205 4401 -1745 3 1106 450 343 22 0 chr6 68356597 68356731 -81160306 + B3 SINE B2 73 209 -7 3 1106 489 279 43 22 chr6 68356794 68356933 -81160104 - ORR1D1 LTR MaLR -10 364 223 3 1106 269 257 102 0 chr6 68356944 68357019 -81160018 - ORR1D1 LTR MaLR -241 133 50 3 1106 1348 256 15 150 chr6 68357022 68357572 -81159465 - RMER19C LTR ERVK -164 738 1 3 1106 489 267 0 22 chr6 68357572 68357697 -81159340 + MTC LTR MaLR 300 421 0 3 1106 432 0 0 0 chr6 68357726 68357774 -81159263 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1106 230 333 19 6 chr6 68357885 68358042 -81158995 + L1M2 LINE L1 4886 5044 -1099 3 1106 228 111 0 0 chr6 68358724 68358760 -81158277 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1106 2656 99 23 10 chr6 68359386 68359782 -81157255 - L1_Mus2 LINE L1 -1 6565 6165 3 1106 238 313 73 31 chr6 68359852 68359959 -81157078 - ORR1D1 LTR MaLR -2 377 266 3 1106 352 227 58 83 chr6 68361026 68361146 -81155891 - ORR1D1 LTR MaLR -257 117 1 3 1106 1292 63 0 17 chr6 68361202 68361381 -81155656 - L1Md_F3 LINE L1 -14 6570 6395 3 1106 1295 43 0 0 chr6 68361381 68361543 -81155494 + L1Md_F3 LINE L1 6164 6325 -257 3 1106 3988 117 96 21 chr6 68361853 68362519 -81154518 - L1Md_F2 LINE L1 0 6582 5867 4 1106 29413 86 6 5 chr6 68362602 68367970 -81149067 + L1Md_F2 LINE L1 212 5583 -300 4 1106 8009 55 2 0 chr6 68367974 68368967 -81148070 + L1Md_F2 LINE L1 5588 6582 0 4 1106 522 46 0 0 chr6 68372813 68372878 -81144159 + (TCC)n Simple_repeat Simple_repeat 2 66 0 4 1106 784 239 122 9 chr6 68372971 68373286 -81143751 - RLTR20D LTR ERVK -1 567 163 4 1106 323 74 89 36 chr6 68373286 68373342 -81143695 + B1_Mus2 SINE Alu 1 59 -88 4 1106 234 0 0 158 chr6 68373343 68373457 -81143580 + (CAGAG)n Simple_repeat Simple_repeat 5 100 0 4 1106 239 223 93 37 chr6 68373458 68373565 -81143472 + RLTR25B LTR ERVK 397 509 -519 4 1106 785 76 0 0 chr6 68373502 68373607 -81143430 + B1_Mus2 SINE Alu 42 146 -1 4 1106 343 250 118 59 chr6 68373623 68373742 -81143295 - RLTR20D LTR ERVK -254 274 82 4 1106 192 77 0 0 chr6 68373752 68373778 -81143259 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1106 207 0 0 0 chr6 68373865 68373888 -81143149 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1106 275 213 12 85 chr6 68376179 68376261 -81140776 + ORR1C2 LTR MaLR 1 76 -308 4 1106 295 279 0 0 chr6 68376245 68376313 -81140724 - B3A SINE B2 -129 69 2 4 1106 429 276 67 12 chr6 68376400 68376636 -81140401 + Lx6 LINE L1 6429 6885 -575 4 1106 2000 241 113 15 chr6 68376652 68377389 -81139648 - L1_Mur1 LINE L1 -3469 2417 1609 4 1106 1125 83 0 0 chr6 68377420 68377600 -81139437 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1106 270 116 0 0 chr6 68377604 68377647 -81139390 + (TCC)n Simple_repeat Simple_repeat 1 43 0 4 1106 1008 146 0 0 chr6 68377655 68377833 -81139204 + (TTC)n Simple_repeat Simple_repeat 1 178 0 4 1106 3230 132 2 4 chr6 68377833 68378355 -81138682 - L1_Mus4 LINE L1 -28 6608 6087 4 1106 1214 162 8 49 chr6 68378346 68378592 -81138445 - L1_Mm LINE L1 -254 5629 5394 4 1106 3875 62 0 0 chr6 68378820 68379302 -81137735 - L1Md_T LINE L1 -3 6579 6098 4 1106 718 186 19 0 chr6 68379302 68379463 -81137574 - L1_Mm LINE L1 -469 5414 5251 4 1106 519 92 0 0 chr6 68380833 68380920 -81136117 + (TTTC)n Simple_repeat Simple_repeat 4 90 0 4 1106 334 121 30 0 chr6 68380938 68381004 -81136033 + G-rich Low_complexity Low_complexity 6 73 0 4 1106 6352 158 20 2 chr6 68381486 68383246 -81133791 - Lx LINE L1 -7 6647 4850 4 1106 524 298 7 30 chr6 68383457 68383592 -81133445 + MTE2b LTR MaLR 16 147 -232 4 1106 25 31 0 0 chr6 68383596 68383628 -81133409 + AT_rich Low_complexity Low_complexity 1 32 0 4 1106 461 323 0 8 chr6 68383866 68383991 -81133046 + MT2A LTR ERVL 233 356 -177 4 1106 225 0 0 0 chr6 68384702 68384727 -81132310 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1106 588 14 0 0 chr6 68385236 68385305 -81131732 + (TC)n Simple_repeat Simple_repeat 1 69 0 4 1106 461 280 138 134 chr6 68385643 68385796 -81131241 + MTE2b LTR MaLR 138 279 -100 4 1106 375 324 91 27 chr6 68385796 68385983 -81131054 - B3 SINE B2 -15 201 3 4 1106 461 280 138 134 chr6 68385983 68386068 -81130969 + MTE2b LTR MaLR 280 377 -2 4 1106 330 26 0 0 chr6 68386796 68386835 -81130202 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 1106 477 0 0 0 chr6 68387156 68387209 -81129828 + (CCA)n Simple_repeat Simple_repeat 2 54 0 4 1106 516 315 14 69 chr6 68388646 68388864 -81128173 - B3 SINE B2 -8 208 3 4 1106 29 47 0 0 chr6 68389886 68389929 -81127108 + AT_rich Low_complexity Low_complexity 1 43 0 4 1106 1667 82 30 4 chr6 68389929 68390163 -81126874 - L1_Mus1 LINE L1 0 6567 6328 4 1106 1613 81 0 5 chr6 68390163 68390375 -81126662 + L1_Mus1 LINE L1 6097 6307 -260 4 1106 1840 152 28 97 chr6 68390375 68390797 -81126240 - RLTR9C LTR ERVK 0 393 1 4 1106 499 112 0 0 chr6 68390820 68390909 -81126128 - L1_Mus3 LINE L1 0 6638 6550 4 1106 2876 145 2 27 chr6 68391532 68392014 -81125023 + Lx2 LINE L1 6523 6992 -5 4 1106 216 200 0 0 chr6 68392014 68392059 -81124978 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1106 225 0 0 0 chr6 68392223 68392248 -81124789 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1106 2572 48 15 6 chr6 68392311 68392643 -81124394 + L1Md_F3 LINE L1 6250 6584 0 4 1106 258 32 0 0 chr6 68393168 68393199 -81123838 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1106 4513 139 148 53 chr6 68393846 68394781 -81122256 - RLTR13D2 LTR ERVK 0 1023 1 4 1106 325 328 46 0 chr6 68394919 68395050 -81121987 + Lx8 LINE L1 6961 7097 -376 4 1106 793 276 24 19 chr6 68397190 68397397 -81119640 - B3 SINE B2 0 216 9 4 1106 183 250 86 35 chr6 68399802 68399860 -81117177 - MER5B DNA MER1_type -85 93 33 4 1106 4701 151 17 133 chr6 68400474 68401763 -81115274 - L1_Mm LINE L1 -378 5499 4377 4 1106 468 66 0 0 chr6 68401762 68401823 -81115214 + L1Md_F2 LINE L1 6017 6077 -505 4 1106 29851 30 1 3 chr6 68401821 68403285 -81113752 + L1Md_T LINE L1 1980 3441 -2442 4 1106 6500 72 8 5 chr6 68403285 68404137 -81112900 + RLTR13A LTR ERVK 1 855 0 4 1106 29851 30 1 3 chr6 68404137 68406288 -81110749 + L1Md_T LINE L1 3442 5586 -297 4 1106 8367 37 0 0 chr6 68406289 68407284 -81109753 + L1Md_T LINE L1 5588 6582 0 4 1106 3941 66 4 2 chr6 68407281 68407798 -81109239 + L1Md_F2 LINE L1 6065 6582 0 4 1106 272 103 0 0 chr6 68407798 68407837 -81109200 + Lx4B LINE L1 5833 5871 -1187 4 1106 2016 246 37 24 chr6 68407841 68408386 -81108651 + Lx4B LINE L1 6503 7054 -4 4 1106 1926 231 69 4 chr6 68408790 68408861 -81108176 - RLTR11A LTR ERVK 0 528 453 4 1106 330 26 0 0 chr6 68408861 68408900 -81108137 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1106 1926 231 69 4 chr6 68408900 68409318 -81107719 - RLTR11A LTR ERVK -76 452 7 4 1106 2588 224 133 63 chr6 68410775 68411055 -81105982 + RMER17B LTR ERVK 81 398 -560 4 1106 567 0 0 0 chr6 68411055 68411118 -81105919 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1106 2588 224 133 63 chr6 68411118 68411658 -81105379 + RMER17B LTR ERVK 399 957 -1 4 1106 4185 168 22 3 chr6 68411806 68412562 -81104475 - Lx LINE L1 -921 4962 4192 4 1106 6429 157 17 11 chr6 68412559 68414258 -81102779 + Lx LINE L1 4939 6648 -6 4 1106 207 0 0 0 chr6 68416523 68416546 -81100491 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1106 246 250 105 23 chr6 68417821 68417907 -81099130 - MTE2b LTR MaLR -23 356 264 4 1106 425 351 52 12 chr6 68417899 68418072 -81098965 + B3 SINE B2 7 186 -30 4 1106 188 34 0 33 chr6 68418420 68418450 -81098587 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1106 351 310 0 0 chr6 68418635 68418735 -81098302 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 1106 266 339 15 112 chr6 68418839 68419035 -81098002 - B4 SINE B4 -108 184 8 4 1106 22 0 0 0 chr6 68419537 68419559 -81097478 + AT_rich Low_complexity Low_complexity 1 22 0 4 1107 519 152 27 0 chr6 68419733 68419845 -81097192 - L1_Mus3 LINE L1 -2 6636 6522 4 1107 848 277 25 0 chr6 68420927 68421129 -81095908 - B3 SINE B2 -1 215 9 4 1107 28 48 0 0 chr6 68421298 68421340 -81095697 + AT_rich Low_complexity Low_complexity 1 42 0 4 1107 399 159 14 0 chr6 68422282 68422351 -81094686 - L1_Mur2 LINE L1 -664 5213 5144 4 1107 4602 172 42 44 chr6 68422349 68423799 -81093238 + Lx LINE L1 5213 6654 0 4 1107 348 88 0 0 chr6 68424669 68424726 -81092311 + (A)n Simple_repeat Simple_repeat 1 57 0 4 1107 2101 184 2 42 chr6 68425887 68426312 -81090725 - L1_Mur2 LINE L1 -369 5508 5101 4 1107 833 198 9 114 chr6 68426311 68426539 -81090498 + L1_Mur2 LINE L1 5511 5714 -163 4 1107 318 148 0 0 chr6 68426582 68426636 -81090401 + (TAAG)n Simple_repeat Simple_repeat 2 55 0 4 1107 189 74 0 0 chr6 68426707 68426734 -81090303 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1107 1697 266 60 4 chr6 68427471 68427957 -81089080 - RLTR11A LTR ERVK 0 528 16 4 1107 315 0 0 0 chr6 68429266 68429301 -81087736 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1107 257 284 78 60 chr6 68430734 68430850 -81086187 - MTEa LTR MaLR -1 378 261 4 1107 1020 120 23 6 chr6 68433008 68433184 -81083853 - Lx LINE L1 -1 6653 6475 4 1107 335 233 89 0 chr6 68433472 68433562 -81083475 - MTE2b LTR MaLR -3 376 279 4 1107 2094 168 27 25 chr6 68433684 68434087 -81082950 + RLTR26 LTR ERVK 1 404 -238 4 1107 1914 185 109 60 chr6 68434170 68434313 -81082724 - RMER3D-int LTR ERVK -1309 1533 1404 4 1107 4464 54 24 0 chr6 68434313 68434886 -81082151 + L1Md_F2 LINE L1 5996 6582 0 4 1107 1914 185 109 60 chr6 68434886 68435238 -81081799 - RMER3D-int LTR ERVK -1439 1403 1014 4 1107 548 228 57 33 chr6 68435260 68435570 -81081467 - RMER3D-int LTR ERVK -1991 851 368 4 1107 1533 308 18 9 chr6 68435588 68436158 -81080879 - MYSERV6-int LTR ERVK -7933 1026 452 4 1107 2328 143 16 24 chr6 68437762 68438185 -81078852 - BGLII LTR ERVK 0 421 2 4 1107 669 13 0 0 chr6 68438211 68438289 -81078748 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 1107 228 328 85 108 chr6 68438470 68438600 -81078437 - RSINE1 SINE B4 -38 127 1 4 1107 21 36 0 0 chr6 68438924 68438952 -81078085 + AT_rich Low_complexity Low_complexity 1 28 0 4 1107 4005 141 18 0 chr6 68439088 68439714 -81077323 - Lx2 LINE L1 0 6997 6361 4 1107 3558 83 0 24 chr6 68439712 68440215 -81076822 + L1Md_F2 LINE L1 6081 6571 -11 4 1107 501 191 16 0 chr6 68440218 68440326 -81076711 - Lx2 LINE L1 -659 6338 6230 4 1107 8179 39 0 22 chr6 68440412 68441634 -81075403 - L1Md_F2 LINE L1 -4 6578 5384 4 1107 4859 80 6 0 chr6 68441634 68442300 -81074737 + L1_Mm LINE L1 3629 4298 -1585 4 1107 11064 125 32 4 chr6 68442296 68444290 -81072747 - Lx2 LINE L1 -462 6104 4043 4 1107 31606 95 6 6 chr6 68445196 68450348 -81066689 + L1Md_F2 LINE L1 422 5571 -312 4 1107 7304 73 15 5 chr6 68450348 68451332 -81065705 + L1Md_F2 LINE L1 5587 6580 -2 4 1107 22 80 0 0 chr6 68452491 68452541 -81064496 + AT_rich Low_complexity Low_complexity 1 50 0 4 1107 2254 217 68 7 chr6 68452887 68453945 -81063092 + L1VL4 LINE L1 796 1926 -1986 4 1107 1469 53 0 0 chr6 68454220 68454410 -81062627 - L1Md_A LINE L1 0 6582 6393 4 1107 1140 82 0 7 chr6 68454647 68454794 -81062243 - B1_Mus2 SINE Alu 0 147 2 4 1107 226 226 19 0 chr6 68455100 68455153 -81061884 - L1MD LINE L1 -670 5689 5636 4 1107 7644 177 18 10 chr6 68455783 68457506 -81059531 + Lx2B LINE L1 5247 6979 -21 4 1107 2935 125 25 35 chr6 68458666 68459146 -81057891 - MT2C_Mm LTR ERVL 0 475 1 4 1107 274 53 0 0 chr6 68459146 68459184 -81057853 - MERVL-int LTR ERVL 0 5485 5448 4 1107 282 206 13 40 chr6 68459184 68459260 -81057777 - ORR1A3-int LTR MaLR -1323 640 567 4 1107 344 135 122 0 chr6 68459260 68459334 -81057703 - MERVL_2A-int LTR ERVL -132 5629 5547 4 1107 4408 146 32 3 chr6 68459352 68460047 -81056990 - MERVL_2A-int LTR ERVL -276 5485 4771 4 1107 3734 145 21 0 chr6 68460048 68460627 -81056410 - MERVL_2A-int LTR ERVL -920 4565 3975 4 1107 1113 205 53 20 chr6 68460631 68460875 -81056162 - MT2C_Mm LTR ERVL 0 475 224 5 1107 1173 307 72 40 chr6 68461120 68462018 -81055019 - L1MC1 LINE L1 -75 6258 5332 5 1107 373 320 107 24 chr6 68462171 68462462 -81054575 - L1MC1 LINE L1 -954 5192 4878 5 1107 1160 134 5 0 chr6 68463383 68463570 -81053467 + B2_Mm2 SINE B2 2 189 -6 5 1107 2313 132 55 0 chr6 68464041 68464421 -81052616 + Lx3A LINE L1 6566 6966 -15 5 1107 240 35 0 0 chr6 68464421 68464450 -81052587 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 1107 23 0 0 0 chr6 68464452 68464475 -81052562 + AT_rich Low_complexity Low_complexity 1 23 0 5 1107 1332 254 103 28 chr6 68465245 68465711 -81051326 - RMER5 LTR ERV1 -1 533 33 5 1107 458 304 17 11 chr6 68465835 68465968 -81051069 + B3A SINE B2 1 140 -53 5 1107 24 67 0 0 chr6 68466007 68466052 -81050985 + AT_rich Low_complexity Low_complexity 1 45 0 5 1107 267 359 22 0 chr6 68466782 68466874 -81050163 + MTE-int LTR MaLR 831 924 -656 5 1107 243 88 0 0 chr6 68466907 68466941 -81050096 + (TATATG)n Simple_repeat Simple_repeat 4 37 0 5 1107 385 412 56 42 chr6 68466942 68467352 -81049685 + MTE-int LTR MaLR 947 1362 -218 5 1107 446 283 98 16 chr6 68469927 68470121 -81046916 + B3 SINE B2 2 211 -5 5 1107 28573 118 41 23 chr6 68470392 68475622 -81041415 + L1_Mur1 LINE L1 116 5877 -9 5 1107 3697 104 15 108 chr6 68475623 68476300 -81040737 + Lx3_Mus LINE L1 6396 7009 0 5 1107 905 306 58 20 chr6 68476382 68476729 -81040308 - Lx8 LINE L1 -885 6588 6229 5 1107 2454 181 98 52 chr6 68476955 68477554 -81039483 + RMER3D-int LTR ERVK 1053 1679 -1163 5 1107 2872 213 47 61 chr6 68477573 68478504 -81038533 + RMER3D-int LTR ERVK 1925 2842 0 5 1107 285 0 43 22 chr6 68478979 68479025 -81038012 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1107 881 236 24 68 chr6 68479223 68479587 -81037450 + L1VL4 LINE L1 801 1129 -5853 5 1107 3570 50 0 0 chr6 68479587 68480027 -81037010 + L1Md_F2 LINE L1 6131 6570 -12 5 1107 881 231 24 54 chr6 68480027 68480049 -81036988 + L1VL4 LINE L1 1130 1153 -5502 5 1107 630 245 149 10 chr6 68480054 68480248 -81036789 + RLTR17 LTR ERVK 470 690 -2 5 1107 436 93 52 0 chr6 68480845 68480942 -81036095 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 5 1107 1694 124 4 14 chr6 68481226 68481504 -81035533 - L1Md_F2 LINE L1 -1 6581 6307 5 1107 264 296 41 7 chr6 68481743 68481889 -81035148 + L1_Mur3 LINE L1 2611 2761 -3119 5 1107 244 347 24 16 chr6 68481952 68482075 -81034962 + Lx7 LINE L1 6597 6720 -976 5 1107 1263 269 68 83 chr6 68482885 68483413 -81033624 + RMER1B Other Other 1 517 -549 5 1107 2294 303 147 17 chr6 68483415 68484549 -81032488 + RMER1A Other Other 1 1027 -3 5 1107 4373 152 48 58 chr6 68485341 68486190 -81030847 - L1VL4 LINE L1 -1689 1926 1092 5 1107 4915 67 5 0 chr6 68486190 68486822 -81030215 - L1_Mus1 LINE L1 0 6567 5933 5 1107 4373 156 22 101 chr6 68486822 68487315 -81029722 - L1VL4 LINE L1 -2524 1091 643 5 1107 180 0 0 0 chr6 68487315 68487335 -81029702 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1107 2911 76 2 22 chr6 68487338 68487742 -81029295 - L1_Mus1 LINE L1 -6 6561 6166 5 1107 2167 179 15 121 chr6 68487742 68487936 -81029101 - L1VL4 LINE L1 -5716 642 456 5 1107 3281 184 44 18 chr6 68488184 68488893 -81028144 + L1_Mur2 LINE L1 4182 4908 -969 5 1107 4420 191 12 5 chr6 68488899 68489719 -81027318 + Lx2 LINE L1 6170 6995 -2 5 1107 26 0 0 0 chr6 68489763 68489789 -81027248 + AT_rich Low_complexity Low_complexity 1 26 0 5 1107 812 97 13 118 chr6 68489789 68489941 -81027096 + B1_Mus1 SINE Alu 3 138 -10 5 1107 491 0 0 17 chr6 68489941 68490001 -81027036 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 5 1107 192 40 0 0 chr6 68490004 68490029 -81027008 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 5 1107 365 350 24 24 chr6 68490134 68490298 -81026739 - MTD LTR MaLR -255 164 1 5 1107 421 382 53 14 chr6 68490425 68490632 -81026405 - B3 SINE B2 -1 215 1 5 1107 309 399 30 48 chr6 68490677 68490843 -81026194 + RSINE1 SINE B4 3 165 0 5 1107 398 119 0 29 chr6 68491286 68491355 -81025682 - MTB LTR MaLR -54 346 280 5 1107 327 327 47 6 chr6 68492855 68493024 -81024013 - L1M2 LINE L1 -3704 2439 2264 5 1107 1509 231 48 24 chr6 68493177 68493537 -81023500 + RMER12 LTR ERVK 1 389 -1419 5 1107 2842 62 2 104 chr6 68493537 68493988 -81023049 + L1_Mus2 LINE L1 6162 6566 0 5 1107 418 332 80 137 chr6 68493988 68494275 -81022762 + RMER12 LTR ERVK 390 609 -1199 5 1107 4725 67 14 8 chr6 68494275 68494905 -81022132 - L1_Mus1 LINE L1 -1 6566 5933 5 1107 418 332 80 137 chr6 68494905 68495006 -81022031 + RMER12 LTR ERVK 610 707 -1101 5 1107 393 39 0 0 chr6 68495161 68495212 -81021825 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1107 285 136 0 43 chr6 68495256 68495325 -81021712 + CT-rich Low_complexity Low_complexity 5 70 0 5 1107 3176 58 2 0 chr6 68495481 68495876 -81021161 - MTA_Mm LTR MaLR 0 396 1 5 1107 955 133 0 0 chr6 68496591 68496726 -81020311 + B1_Mus1 SINE Alu 5 139 -9 5 1107 180 0 0 0 chr6 68496726 68496746 -81020291 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1107 477 0 0 0 chr6 68497204 68497257 -81019780 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1107 496 390 25 22 chr6 68497743 68498058 -81018979 - Lx8 LINE L1 -711 6762 6447 5 1107 300 161 0 0 chr6 68498460 68498522 -81018515 + A-rich Low_complexity Low_complexity 1 62 0 5 1107 5856 161 2 133 chr6 68498542 68499062 -81017975 + L1_Mm LINE L1 1850 2342 -3541 5 1107 904 96 0 0 chr6 68499062 68499187 -81017850 + B1_Mus2 SINE Alu 1 125 -22 5 1107 5856 161 2 133 chr6 68499187 68500000 -81017037 + L1_Mm LINE L1 2343 3116 -2767 5 1107 189 0 0 0 chr6 68500015 68500036 -81017001 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1 1107 9062 202 27 118 chr6 68500038 68502052 -81014985 + L1_Mus3 LINE L1 3127 4901 -979 2 1107 3424 57 0 0 chr6 68502052 68502477 -81014560 + L1Md_F2 LINE L1 6146 6570 -12 3 1107 9062 149 15 50 chr6 68502477 68504236 -81012801 + L1_Mus3 LINE L1 4902 6636 -2 2 1107 3231 53 2 0 chr6 68504483 68504878 -81012159 - MTA_Mm LTR MaLR 0 396 1 4 1107 1616 233 25 3 chr6 68505081 68505434 -81011603 + RMER10A LTR ERVL 1 361 -81 5 1107 1412 266 3 43 chr6 68506081 68506430 -81010607 + RLTR18B LTR ERVK 2 336 -176 6 1107 2823 191 93 8 chr6 68506447 68507069 -81009968 - RLTR33 LTR ERVK -3 675 1 7 1107 704 248 32 0 chr6 68507236 68507393 -81009644 + RLTR18B LTR ERVK 344 505 -7 6 1107 825 245 73 44 chr6 68507393 68507786 -81009251 + RMER6B LTR ERVK 1 452 -9 8 1107 198 0 0 0 chr6 68507786 68507808 -81009229 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 9 1107 187 31 62 0 chr6 68507902 68507934 -81009103 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1107 576 42 0 0 chr6 68508836 68508907 -81008130 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1107 1849 220 5 31 chr6 68509232 68509622 -81007415 - RLTR14 LTR ERV1 0 382 3 1 1107 989 219 17 144 chr6 68509676 68510098 -81006939 - RLTR14-int LTR ERV1 -102 5215 4848 1 1107 475 131 24 24 chr6 68510250 68510375 -81006662 + CT-rich Low_complexity Low_complexity 4 128 0 1 1107 741 291 33 13 chr6 68510487 68510593 -81006444 - RLTR14-int LTR ERV1 -491 4826 4718 1 1107 243 0 0 0 chr6 68510593 68510620 -81006417 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1107 741 291 33 13 chr6 68510620 68510812 -81006225 - RLTR14-int LTR ERV1 -600 4717 4522 1 1107 328 244 0 24 chr6 68510976 68511060 -81005977 - RLTR14-int LTR ERV1 -829 4488 4407 1 1107 1196 268 183 7 chr6 68511100 68511548 -81005489 - RLTR14-int LTR ERV1 -1023 4294 3768 1 1107 3792 246 35 87 chr6 68511553 68512921 -81004116 - RLTR14-int LTR ERV1 -1988 3329 2033 1 1107 866 265 82 7 chr6 68513008 68513289 -81003748 - RLTR14-int LTR ERV1 -3274 2043 1742 1 1107 609 228 130 26 chr6 68513327 68513557 -81003480 - RLTR14-int LTR ERV1 -3981 1336 1083 1 1107 6877 44 6 5 chr6 68513561 68514459 -81002578 - L1Md_F3 LINE L1 -15 6569 5671 1 1107 3367 19 0 0 chr6 68514459 68514876 -81002161 + L1_Mm LINE L1 3616 4032 -1851 1 1107 23 0 0 0 chr6 68514906 68514929 -81002108 + AT_rich Low_complexity Low_complexity 1 23 0 1 1107 524 332 48 24 chr6 68515308 68515518 -81001519 - ID_B1 SINE B4 -2 222 8 1 1107 441 158 7 35 chr6 68515563 68515707 -81001330 + (TA)n Simple_repeat Simple_repeat 2 141 0 1 1107 6853 133 30 14 chr6 68516299 68517377 -80999660 - Lx3_Mus LINE L1 -1 7008 5919 2 1107 225 0 0 0 chr6 68517377 68517402 -80999635 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2 1107 6853 133 30 14 chr6 68517402 68517497 -80999540 - Lx3_Mus LINE L1 -1091 5918 5817 2 1107 9337 98 40 18 chr6 68517497 68517834 -80999203 + L1_Mur1 LINE L1 4297 4637 -1249 2 1107 194 62 31 0 chr6 68517834 68517866 -80999171 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1107 9337 98 40 18 chr6 68517866 68519028 -80998009 + L1_Mur1 LINE L1 4638 5828 -58 2 1107 376 219 8 125 chr6 68519488 68519507 -80997530 + MT2B LTR ERVL 150 154 -447 2 1107 701 118 2 6 chr6 68519507 68519626 -80997411 + B1_Mus1 SINE Alu 1 116 -4 2 1107 1140 288 24 16 chr6 68519706 68520087 -80996950 + Lx9 LINE L1 7048 7431 -213 2 1107 372 88 0 0 chr6 68520114 68520171 -80996866 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1107 492 18 0 0 chr6 68521553 68521610 -80995427 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1107 797 280 37 53 chr6 68521745 68522100 -80994937 + RodERV21-int LTR ERV1 730 1078 -3913 2 1107 7335 37 9 0 chr6 68522453 68523337 -80993700 + L1Md_F3 LINE L1 5691 6582 -2 3 1107 1399 59 36 0 chr6 68523338 68523558 -80993479 + MusHAL1 LINE L1 1853 2080 -632 3 1107 1005 122 0 0 chr6 68523627 68523783 -80993254 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 3 1107 4847 275 11 30 chr6 68523784 68525175 -80991862 + RodERV21-int LTR ERV1 1354 2718 -2273 2 1107 215 186 0 44 chr6 68525187 68525232 -80991805 + C-rich Low_complexity Low_complexity 1 43 0 3 1107 242 115 19 0 chr6 68526130 68526182 -80990855 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 3 1107 1508 241 47 27 chr6 68526707 68527154 -80989883 - Lx4B LINE L1 -269 6789 6334 3 1107 451 303 0 0 chr6 68527772 68527894 -80989143 + MTC LTR MaLR 3 124 -297 3 1107 1316 228 76 25 chr6 68527903 68528218 -80988819 + MTC LTR MaLR 60 390 -31 3 1107 910 311 29 98 chr6 68528236 68528436 -80988601 + RLTR12B LTR ERVK 42 245 -283 3 1107 957 183 27 161 chr6 68528436 68528808 -80988229 - RLTRETN_Mm LTR ERVK 0 322 1 3 1107 910 311 29 98 chr6 68528808 68529085 -80987952 + RLTR12B LTR ERVK 246 486 -42 3 1107 261 0 0 0 chr6 68529944 68529973 -80987064 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1107 769 354 29 35 chr6 68530131 68530444 -80986593 - MTE-int LTR MaLR -483 1097 787 4 1107 486 0 0 0 chr6 68530980 68531034 -80986003 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1107 2037 141 0 0 chr6 68531725 68532037 -80985000 - MERVL_2A-int LTR ERVL -1432 4329 4018 4 1107 2703 114 5 19 chr6 68532059 68532472 -80984565 - MTB_Mm LTR MaLR 0 407 1 4 1107 4898 153 59 65 chr6 68532475 68533574 -80983463 - MTB_Mm-int LTR MaLR -4 1094 3 4 1107 2770 149 8 35 chr6 68533578 68534066 -80982971 - MT2C_Mm LTR ERVL 0 475 1 4 1107 1096 260 80 21 chr6 68534474 68534848 -80982189 - Lx9 LINE L1 -644 7000 6605 4 1107 24 0 0 0 chr6 68534854 68534878 -80982159 + AT_rich Low_complexity Low_complexity 1 24 0 4 1107 1087 293 84 6 chr6 68536185 68536532 -80980505 + ORR1D1 LTR MaLR 1 374 0 4 1107 416 262 72 5 chr6 68537875 68538097 -80978940 - Lx9 LINE L1 -5 7639 7403 4 1107 374 289 76 34 chr6 68538097 68538215 -80978822 - B3 SINE B2 -93 123 1 5 1107 279 0 0 0 chr6 68538815 68538846 -80978191 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1107 1100 30 7 0 chr6 68538846 68538981 -80978056 - B1_Mm SINE Alu -3 144 9 5 1107 414 0 0 0 chr6 68539152 68539198 -80977839 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1107 1139 76 7 0 chr6 68539428 68539572 -80977465 + B1_Mus1 SINE Alu 4 148 0 5 1107 291 20 38 38 chr6 68539572 68539625 -80977412 + (CAAAAA)n Simple_repeat Simple_repeat 6 58 0 5 1107 379 205 24 82 chr6 68539718 68539803 -80977234 + RLTR17 LTR ERVK 613 692 0 5 1107 959 217 14 9 chr6 68540110 68540333 -80976704 + Lx4B LINE L1 6834 7057 -1 5 1107 779 211 0 11 chr6 68540429 68540611 -80976426 + L1Md_A LINE L1 6400 6579 -3 5 1107 26 82 0 0 chr6 68540930 68540991 -80976046 + AT_rich Low_complexity Low_complexity 1 61 0 5 1107 2646 38 35 0 chr6 68541830 68542146 -80974891 + IAPLTR2b LTR ERVK 1 327 0 6 1107 3272 88 12 23 chr6 68542147 68542884 -80974153 + IAPEz-int LTR ERVK 9 662 -5819 6 1107 2480 79 0 3 chr6 68542884 68543227 -80973810 + IAPEz-int LTR ERVK 1359 1700 -4781 6 1107 5800 70 18 17 chr6 68543222 68544050 -80972987 + IAPEz-int LTR ERVK 5653 6481 0 6 1107 2691 35 28 0 chr6 68544050 68544368 -80972669 + IAPLTR2b LTR ERVK 1 327 0 6 1107 239 359 27 33 chr6 68544721 68544871 -80972166 + ORR1E LTR MaLR 1 149 -210 6 1107 1131 88 0 0 chr6 68546336 68546483 -80970554 + B1_Mus1 SINE Alu 1 147 -1 6 1107 1134 203 145 63 chr6 68547175 68547359 -80969678 - RMER17C LTR ERVK 0 410 234 6 1107 670 53 21 0 chr6 68547359 68547454 -80969583 + (GA)n Simple_repeat Simple_repeat 1 97 0 6 1107 1134 203 145 63 chr6 68547454 68547648 -80969389 - RMER17C LTR ERVK -177 233 3 6 1107 3312 194 45 8 chr6 68547949 68548668 -80968369 + Lx3C LINE L1 6200 6944 -32 6 1107 308 359 63 5 chr6 68548703 68548910 -80968127 + Lx8 LINE L1 6998 7216 -257 6 1107 195 184 0 0 chr6 68549022 68549060 -80967977 + A-rich Low_complexity Low_complexity 1 38 0 6 1107 23 0 0 0 chr6 68549091 68549114 -80967923 + AT_rich Low_complexity Low_complexity 1 23 0 6 1107 503 306 68 12 chr6 68549354 68549605 -80967432 + L1M2 LINE L1 2172 2436 -3707 6 1108 6301 189 42 13 chr6 68551205 68552782 -80964255 - Lx5 LINE L1 -3 7047 5409 7 1108 488 174 0 0 chr6 68552798 68552896 -80964141 - Lx5 LINE L1 -1383 4494 4397 7 1108 7823 200 32 19 chr6 68552894 68554908 -80962129 - Lx5 LINE L1 -2179 3698 1659 7 1108 447 19 0 0 chr6 68555224 68555276 -80961761 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 7 1108 557 28 0 14 chr6 68555345 68555417 -80961620 + (TA)n Simple_repeat Simple_repeat 1 71 0 7 1108 2709 191 47 62 chr6 68555510 68556124 -80960913 - RLTR1D LTR ERV1 0 605 1 7 1108 1038 121 38 11 chr6 68556446 68556630 -80960407 - L1_Mus3 LINE L1 -2 6636 6448 7 1108 1071 158 76 9 chr6 68556630 68556831 -80960206 - BGLII_B LTR ERVK -172 269 54 7 1108 6560 98 18 27 chr6 68556831 68557810 -80959227 + RLTR13D5 LTR ERVK 1 971 -52 7 1108 288 200 0 0 chr6 68557810 68557865 -80959172 - BGLII_B LTR ERVK -386 55 1 7 1108 302 289 23 16 chr6 68558119 68558211 -80958826 - B1F SINE Alu -6 143 33 7 1108 2753 273 25 20 chr6 68558671 68559755 -80957282 - RMER1B Other Other -4 1062 12 7 1108 230 0 33 0 chr6 68559809 68559839 -80957198 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1108 790 311 123 21 chr6 68560128 68560552 -80956485 + Lx6 LINE L1 6968 7434 -26 8 1108 1130 301 15 70 chr6 68560657 68561011 -80956026 - RMER5 LTR ERV1 -21 513 163 8 1108 4276 24 0 12 chr6 68561011 68561510 -80955527 + MT2_Mm LTR ERVL 1 493 0 8 1108 1130 301 15 70 chr6 68561510 68561623 -80955414 - RMER5 LTR ERV1 -372 162 72 8 1108 44190 15 8 0 chr6 68561623 68566827 -80950210 + MERVL-int LTR ERVL 114 5360 -125 8 1108 357 157 58 46 chr6 68566827 68566914 -80950123 + ORR1A3-int LTR MaLR 553 640 -1323 8 1108 302 0 0 0 chr6 68566914 68566952 -80950085 + MERVL-int LTR ERVL 5448 5485 0 8 1108 4276 24 0 12 chr6 68566952 68567451 -80949586 + MT2_Mm LTR ERVL 1 493 0 8 1108 567 107 0 0 chr6 68567602 68567686 -80949351 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 8 1108 386 53 18 0 chr6 68567688 68567745 -80949292 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1108 750 23 0 0 chr6 68568692 68568780 -80948257 + (GAA)n Simple_repeat Simple_repeat 2 89 0 8 1108 690 334 20 7 chr6 68570191 68570495 -80946542 - Lx8 LINE L1 -861 6612 6305 8 1108 1002 99 14 0 chr6 68570667 68570809 -80946228 + B1_Mus1 SINE Alu 5 148 0 8 1108 516 32 0 0 chr6 68570817 68570879 -80946158 + (GGAAA)n Simple_repeat Simple_repeat 3 64 0 9 1108 1023 173 3 0 chr6 68571042 68571310 -80945727 + CT-rich Low_complexity Low_complexity 1 268 0 9 1108 449 216 9 0 chr6 68571310 68571335 -80945702 + polypyrimidine Low_complexity Low_complexity 2 26 0 9 1108 22 56 0 0 chr6 68572058 68572094 -80944943 + AT_rich Low_complexity Low_complexity 1 36 0 9 1108 8673 171 27 15 chr6 68572094 68574972 -80942065 + Lx2A1 LINE L1 4095 7008 0 9 1108 242 243 48 20 chr6 68575028 68575175 -80941862 + (TA)n Simple_repeat Simple_repeat 2 152 0 9 1108 224 79 0 50 chr6 68575177 68575217 -80941820 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 9 1108 1452 131 188 7 chr6 68575219 68575511 -80941526 - IAPLTR4 LTR ERVK 0 345 1 9 1108 306 125 0 0 chr6 68575548 68575596 -80941441 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1108 654 47 0 0 chr6 68575596 68575681 -80941356 + (GA)n Simple_repeat Simple_repeat 1 86 0 9 1108 440 229 53 53 chr6 68575915 68576067 -80940970 + RLTR22_Mur LTR ERVK 5 156 -1692 1 1108 364 335 40 90 chr6 68576060 68576260 -80940777 + RMER12 LTR ERVK 1129 1318 -4 1 1108 640 333 19 10 chr6 68576325 68576531 -80940506 - B3 SINE B2 -6 210 3 1 1108 2915 83 2 5 chr6 68576666 68577067 -80939970 - L1_Mus1 LINE L1 -2 6565 6166 1 1108 2580 232 81 35 chr6 68577558 68578516 -80938521 + L1_Mur3 LINE L1 3785 4786 -1094 1 1108 1587 193 53 6 chr6 68578551 68578890 -80938147 + Lx LINE L1 6188 6542 -112 1 1108 971 316 84 30 chr6 68578913 68579377 -80937660 + Lx6 LINE L1 6945 7433 -27 1 1108 543 323 20 0 chr6 68579473 68579674 -80937363 - B3 SINE B2 -8 208 4 1 1108 378 0 0 0 chr6 68579991 68580033 -80937004 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1108 941 150 20 0 chr6 68580030 68580280 -80936757 + GA-rich Low_complexity Low_complexity 1 255 0 1 1108 6767 59 12 0 chr6 68580469 68581330 -80935707 + L1Md_F2 LINE L1 5693 6563 -19 1 1108 183 42 0 0 chr6 68584226 68584250 -80932787 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1108 21 0 0 0 chr6 68585254 68585275 -80931762 + AT_rich Low_complexity Low_complexity 1 21 0 1 1108 381 47 47 0 chr6 68585281 68585345 -80931692 + (TATAG)n Simple_repeat Simple_repeat 3 69 0 1 1108 207 186 0 0 chr6 68586490 68586533 -80930504 + CT-rich Low_complexity Low_complexity 3 45 0 1 1108 335 317 126 7 chr6 68586534 68586677 -80930360 - HAL1-3A_ME LINE L1 -414 2444 2285 1 1108 290 98 20 0 chr6 68586681 68586732 -80930305 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1108 221 65 30 75 chr6 68587079 68587146 -80929891 + (TTTG)n Simple_repeat Simple_repeat 1 64 0 1 1108 1102 82 7 0 chr6 68587162 68587309 -80929728 - B1_Mus1 SINE Alu 0 148 1 1 1108 300 314 22 71 chr6 68587699 68587881 -80929156 + Lx8 LINE L1 6196 6368 -1105 1 1108 443 356 83 7 chr6 68587892 68588123 -80928914 + ORR1D2 LTR MaLR 29 273 -101 1 1108 923 327 40 46 chr6 68588281 68588806 -80928231 + Lx8 LINE L1 6381 6902 -571 1 1108 226 240 0 0 chr6 68588830 68588880 -80928157 + Lx9 LINE L1 7105 7154 -490 1 1108 2001 41 4 0 chr6 68588940 68589184 -80927853 - L1Md_T LINE L1 -1 6581 6337 1 1108 2294 25 0 0 chr6 68589184 68589462 -80927575 + L1Md_T LINE L1 6059 6336 -246 1 1108 1637 99 41 30 chr6 68590146 68590416 -80926621 + L1_Mus3 LINE L1 6353 6625 -13 1 1108 4320 154 23 30 chr6 68591084 68591993 -80925044 + L1Md_T LINE L1 303 1205 -5411 1 1108 34766 32 0 0 chr6 68591999 68596416 -80920621 + L1Md_T LINE L1 1170 5586 -297 1 1108 7970 55 4 0 chr6 68596416 68597408 -80919629 + L1Md_T LINE L1 5587 6582 0 1 1108 274 43 0 60 chr6 68597533 68597583 -80919454 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 1 1108 1661 217 55 8 chr6 68597586 68597948 -80919089 - MTB_Mm LTR MaLR -28 379 1 1 1108 312 91 0 0 chr6 68598671 68598715 -80918322 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1108 385 192 12 25 chr6 68598990 68599070 -80917967 - RMER10A LTR ERVL -363 79 1 1 1108 1432 145 18 111 chr6 68599264 68599605 -80917432 - Lx3C LINE L1 -733 5153 4845 1 1108 6954 158 32 22 chr6 68599607 68601375 -80915662 + Lx3C LINE L1 5168 6961 -15 1 1108 486 0 0 0 chr6 68601377 68601431 -80915606 + (TAA)n Simple_repeat Simple_repeat 2 55 0 1 1108 288 53 0 0 chr6 68601573 68601611 -80915426 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1108 26 82 0 0 chr6 68602187 68602248 -80914789 + AT_rich Low_complexity Low_complexity 1 61 0 1 1108 636 225 118 6 chr6 68602382 68602543 -80914494 - B2_Mm2 SINE B2 -8 187 9 1 1108 708 269 40 0 chr6 68603270 68603445 -80913592 - RLTR30 LTR ERV1 -195 184 3 1 1108 739 235 83 29 chr6 68603685 68603926 -80913111 - RLTR22_Mur LTR ERVK -3 1845 1592 1 1108 5505 118 6 0 chr6 68604049 68604866 -80912171 - L1_Mus2 LINE L1 -1 6565 5744 1 1108 2870 160 5 5 chr6 68604867 68605427 -80911610 + L1_Mur2 LINE L1 4073 4632 -1245 1 1108 7908 58 2 0 chr6 68605472 68606484 -80910553 - MMERVK10C-int LTR ERVK -484 7097 6084 1 1108 4980 61 0 6 chr6 68606484 68607171 -80909866 - L1Md_F2 LINE L1 0 6582 5903 1 1108 11363 59 1 0 chr6 68607171 68608638 -80908399 - MMERVK10C-int LTR ERVK -1498 6083 4616 1 1108 2216 106 16 3 chr6 68608638 68608961 -80908076 - IAPLTR2b LTR ERVK 0 327 1 1 1108 5852 36 5 12 chr6 68608963 68609712 -80907325 - IAPEz-int LTR ERVK -2 6479 5736 1 1108 2032 84 0 0 chr6 68609715 68609990 -80907047 - IAPEz-int LTR ERVK -4848 1633 1359 1 1108 3425 55 1 16 chr6 68609990 68610568 -80906469 - IAPEz-int LTR ERVK -5819 662 168 1 1108 240 327 0 0 chr6 68610568 68610623 -80906414 - RLTR27 LTR ERVK -34 275 221 1 1108 1102 120 46 27 chr6 68610623 68610978 -80906059 - IAPEz-int LTR ERVK -7312 269 9 1 1108 2267 99 16 3 chr6 68610979 68611302 -80905735 - IAPLTR2b LTR ERVK 0 327 1 1 1108 7266 50 0 0 chr6 68611302 68612194 -80904843 - MMERVK10C-int LTR ERVK -2960 4621 3730 1 1108 8366 90 48 48 chr6 68612192 68613516 -80903521 - MMERVK10C-int LTR ERVK -6255 1326 3 1 1108 3246 71 33 2 chr6 68613518 68613941 -80903096 - RLTR10C LTR ERVK 0 436 1 1 1108 7853 174 19 9 chr6 68613957 68616310 -80900727 + Lx2A1 LINE L1 4624 7004 -4 1 1108 253 168 40 56 chr6 68616341 68616467 -80900570 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 1 1108 292 243 0 18 chr6 68616494 68616607 -80900430 + (TA)n Simple_repeat Simple_repeat 1 111 0 1 1108 302 0 26 0 chr6 68616649 68616687 -80900350 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1108 531 0 0 0 chr6 68616687 68616745 -80900292 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1108 502 223 20 48 chr6 68616977 68617123 -80899914 + RLTR22_Mur LTR ERVK 1 142 -1706 1 1108 380 314 64 94 chr6 68617244 68617479 -80899558 + RMER12 LTR ERVK 1091 1318 -4 1 1108 599 328 21 11 chr6 68617559 68617747 -80899290 - B3 SINE B2 -23 193 4 1 1108 450 0 0 0 chr6 68617841 68617891 -80899146 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1108 3101 82 14 2 chr6 68617908 68618335 -80898702 - L1_Mus1 LINE L1 -2 6565 6134 1 1108 23 0 0 0 chr6 68618444 68618467 -80898570 + AT_rich Low_complexity Low_complexity 1 23 0 1 1108 1624 137 42 10 chr6 68618562 68618872 -80898165 + RLTR46 LTR ERVK 1 320 0 1 1108 23 0 0 0 chr6 68619078 68619101 -80897936 + AT_rich Low_complexity Low_complexity 1 23 0 1 1108 2928 222 102 22 chr6 68619123 68619503 -80897534 + L1_Mur3 LINE L1 3787 4212 -1668 1 1108 459 0 0 0 chr6 68619503 68619554 -80897483 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1108 2928 222 102 22 chr6 68619554 68619960 -80897077 + L1_Mur3 LINE L1 4213 4623 -1257 1 1108 396 0 0 0 chr6 68619960 68620004 -80897033 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1108 2928 222 102 22 chr6 68620004 68620159 -80896878 + L1_Mur3 LINE L1 4624 4802 -1078 1 1108 1616 210 9 6 chr6 68620178 68620499 -80896538 + Lx LINE L1 6188 6509 -145 1 1108 273 39 59 0 chr6 68620514 68620565 -80896472 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1108 1673 209 58 8 chr6 68621323 68621684 -80895353 + MTB_Mm LTR MaLR 1 379 -28 1 1108 249 43 0 60 chr6 68621687 68621737 -80895300 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 1 1108 1670 115 11 32 chr6 68622528 68622806 -80894231 - L1_Mus3 LINE L1 -14 6624 6353 1 1108 215 167 21 0 chr6 68623159 68623207 -80893830 + A-rich Low_complexity Low_complexity 3 51 0 1 1108 1113 328 44 42 chr6 68623610 68624132 -80892905 - Lx8 LINE L1 -571 6902 6380 1 1108 445 362 51 30 chr6 68624288 68624524 -80892513 - ORR1D2 LTR MaLR -100 270 30 1 1108 283 311 28 77 chr6 68624535 68624716 -80892321 - Lx8 LINE L1 -1105 6368 6197 1 1108 4766 89 31 1 chr6 68624774 68625449 -80891588 - L1_Mus1 LINE L1 0 6567 5873 1 1108 200 35 35 0 chr6 68626082 68626111 -80890926 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1108 841 150 6 12 chr6 68626116 68626278 -80890759 + GA-rich Low_complexity Low_complexity 3 163 0 1 1108 392 55 18 0 chr6 68627474 68627529 -80889508 + (CTATA)n Simple_repeat Simple_repeat 3 58 0 1 1108 9404 12 0 0 chr6 68631431 68632516 -80884521 - L1Md_A LINE L1 -1082 4801 3717 1 1108 6850 23 0 0 chr6 68632508 68633304 -80883733 + L1Md_A LINE L1 4791 5586 -297 1 1108 8788 15 0 0 chr6 68633304 68634300 -80882737 + L1Md_A LINE L1 5587 6582 0 1 1108 277 202 45 0 chr6 68634542 68634631 -80882406 + CT-rich Low_complexity Low_complexity 3 95 0 1 1108 1032 119 6 11 chr6 68634636 68634815 -80882222 + (TTC)n Simple_repeat Simple_repeat 1 178 0 1 1108 733 292 15 0 chr6 68635154 68635356 -80881681 + B3 SINE B2 4 208 -8 1 1108 1701 341 54 36 chr6 68635476 68636380 -80880657 - Lx5 LINE L1 -20 7030 6111 1 1108 221 0 0 33 chr6 68636476 68636506 -80880531 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1108 341 310 74 65 chr6 68636606 68636823 -80880214 - RLTR12B LTR ERVK -309 219 1 1 1108 1634 241 74 2 chr6 68636829 68637390 -80879647 + Lx6 LINE L1 5473 6067 -1393 1 1108 1767 195 20 6 chr6 68637816 68638166 -80878871 - Lx LINE L1 -112 6542 6188 1 1108 2575 221 54 104 chr6 68638185 68638339 -80878698 - L1_Mur3 LINE L1 -1076 4804 4626 1 1108 267 79 0 0 chr6 68638339 68638377 -80878660 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1108 2575 221 54 104 chr6 68638377 68639294 -80877743 - L1_Mur3 LINE L1 -1255 4625 3788 1 1108 2954 97 16 0 chr6 68639767 68640192 -80876845 + L1_Mus1 LINE L1 6134 6565 -2 1 1108 363 60 0 0 chr6 68640221 68640271 -80876766 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1108 585 341 27 11 chr6 68640364 68640548 -80876489 + B3 SINE B2 3 189 -27 1 1108 383 327 59 93 chr6 68640635 68640871 -80876166 - RMER12 LTR ERVK -4 1318 1091 1 1108 464 224 33 53 chr6 68640991 68641142 -80875895 - RLTR22_Mur LTR ERVK -1700 148 1 1 1108 882 58 0 0 chr6 68641374 68641495 -80875542 + (TC)n Simple_repeat Simple_repeat 2 122 0 1 1108 259 240 9 9 chr6 68641515 68641620 -80875417 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 1108 227 219 46 23 chr6 68641633 68641764 -80875273 + (TA)n Simple_repeat Simple_repeat 2 135 0 1 1108 3692 173 30 9 chr6 68641792 68642481 -80874556 - Lx2A1 LINE L1 -2 7006 6303 1 1108 829 210 49 21 chr6 68642482 68642725 -80874312 - Lx2A1 LINE L1 -796 6212 5963 1 1108 4855 190 26 6 chr6 68642725 68643738 -80873299 - Lx2A1 LINE L1 -208 5669 4637 1 1108 279 0 0 0 chr6 68643740 68643771 -80873266 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1108 3228 76 31 2 chr6 68643779 68644203 -80872834 + RLTR10C LTR ERVK 1 436 0 1 1108 56525 56 10 8 chr6 68644205 68651286 -80865751 + MMERVK10C-int LTR ERVK 3 7097 -484 1 1108 3016 168 7 7 chr6 68651331 68651906 -80865131 - Lx2A1 LINE L1 -1245 4632 4058 1 1108 213 62 62 0 chr6 68651918 68651966 -80865071 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1108 1524 328 94 25 chr6 68652029 68652872 -80864165 + Lx5 LINE L1 6172 7434 -26 1 1108 624 322 15 0 chr6 68652974 68653176 -80863861 - B3 SINE B2 -8 208 4 1 1108 420 20 0 0 chr6 68653495 68653544 -80863493 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1108 752 99 0 44 chr6 68653537 68653695 -80863342 + (GAAAA)n Simple_repeat Simple_repeat 5 155 0 1 1108 22 0 0 0 chr6 68656779 68656801 -80860236 + AT_rich Low_complexity Low_complexity 1 22 0 1 1108 544 27 27 0 chr6 68657823 68657897 -80859140 + (TATAG)n Simple_repeat Simple_repeat 3 78 0 1 1108 190 273 84 75 chr6 68658709 68658816 -80858221 - L3 LINE CR1 -28 4461 4354 2 1108 649 190 29 0 chr6 68659058 68659232 -80857805 + CT-rich Low_complexity Low_complexity 2 180 0 2 1108 221 0 0 33 chr6 68659633 68659663 -80857374 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1108 1128 82 0 0 chr6 68659663 68659802 -80857235 - B1_Mus1 SINE Alu -8 140 2 2 1108 21 0 0 0 chr6 68659840 68659861 -80857176 + AT_rich Low_complexity Low_complexity 1 21 0 2 1108 245 375 0 0 chr6 68660076 68660164 -80856873 + Lx8 LINE L1 6815 6902 -571 2 1108 265 200 0 0 chr6 68660188 68660238 -80856799 + Lx9 LINE L1 7105 7154 -490 2 1108 300 321 0 64 chr6 68660255 68660395 -80856642 - L1M2 LINE L1 -781 5362 5232 2 1108 4049 39 0 0 chr6 68660470 68660955 -80856082 - L1Md_A LINE L1 -2 6580 6096 2 1108 194 0 39 0 chr6 68661046 68661072 -80855965 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 1108 1704 127 3 24 chr6 68661433 68661723 -80855314 + L1_Mus3 LINE L1 6353 6636 -2 2 1108 276 55 0 69 chr6 68662502 68662560 -80854477 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1108 1557 229 58 8 chr6 68662563 68662924 -80854113 - MTB_Mm LTR MaLR -28 379 1 2 1108 402 217 12 24 chr6 68663930 68664015 -80853022 - RMER10A LTR ERVL -358 84 1 2 1108 25 65 0 0 chr6 68664050 68664096 -80852941 + AT_rich Low_complexity Low_complexity 1 46 0 2 1108 1557 162 19 62 chr6 68664213 68664463 -80852574 - L1_Mur1 LINE L1 -733 5153 4912 2 1108 243 0 0 0 chr6 68664463 68664490 -80852547 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 2 1108 1557 162 19 62 chr6 68664490 68664562 -80852475 - L1_Mur1 LINE L1 -975 4911 4845 2 1108 7987 149 25 18 chr6 68664564 68666337 -80850700 + Lx3C LINE L1 5168 6961 -15 2 1108 419 0 0 19 chr6 68666339 68666391 -80850646 + (TAA)n Simple_repeat Simple_repeat 2 52 0 2 1108 432 0 0 0 chr6 68666530 68666578 -80850459 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1108 2418 30 19 201 chr6 68667074 68667497 -80849540 + ORR1A0 LTR MaLR 1 346 0 2 1108 715 189 119 6 chr6 68667776 68667936 -80849101 - B2_Mm2 SINE B2 -9 186 9 2 1108 804 255 43 0 chr6 68668649 68668837 -80848200 - RLTR30 LTR ERV1 -181 198 3 2 1108 830 235 92 21 chr6 68669010 68669249 -80847788 - RLTR22_Mur LTR ERVK -3 1845 1590 2 1108 21 57 0 0 chr6 68669336 68669371 -80847666 + AT_rich Low_complexity Low_complexity 1 35 0 2 1108 6618 98 14 6 chr6 68669374 68671033 -80846004 - L1_Mus2 LINE L1 -1 6565 4906 2 1108 912 166 0 52 chr6 68671033 68671224 -80845813 - RLTR22_Mur LTR ERVK -1132 716 536 2 1108 2635 33 2 233 chr6 68671224 68671731 -80845306 + RLTR10 LTR ERVK 1 390 0 2 1108 16081 22 5 1 chr6 68671741 68673680 -80843357 + RLTR10-int LTR ERVK 41 1986 -1 2 1108 2635 33 2 233 chr6 68673680 68674187 -80842850 + RLTR10 LTR ERVK 1 390 0 2 1108 630 63 42 0 chr6 68674187 68674282 -80842755 - RLTR22_Mus LTR ERVK -1260 548 450 2 1108 1910 224 11 15 chr6 68674296 68674750 -80842287 + RLTR20B3 LTR ERVK 21 574 -3 2 1108 1118 75 0 0 chr6 68675341 68675488 -80841549 + B1_Mm SINE Alu 1 147 0 2 1108 707 247 16 54 chr6 68676131 68676315 -80840722 + B2_Mm2 SINE B2 2 178 -17 2 1108 1143 119 0 0 chr6 68676315 68676491 -80840546 + (GAA)n Simple_repeat Simple_repeat 3 178 0 2 1108 539 112 0 11 chr6 68676491 68676581 -80840456 + (GGA)n Simple_repeat Simple_repeat 2 90 0 2 1108 707 319 20 0 chr6 68677015 68677219 -80839818 - B3 SINE B2 0 216 9 2 1108 180 77 0 0 chr6 68677265 68677291 -80839746 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2 1108 204 40 0 0 chr6 68677291 68677316 -80839721 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1108 228 366 14 0 chr6 68678041 68678112 -80838925 - Tigger5 DNA MER2_type -2187 219 148 2 1108 25 0 0 0 chr6 68678181 68678206 -80838831 + AT_rich Low_complexity Low_complexity 1 25 0 2 1108 778 226 78 53 chr6 68678950 68679231 -80837806 + Lx9 LINE L1 6976 7263 -381 2 1108 2263 273 33 11 chr6 68679331 68680070 -80836967 + Lx2B LINE L1 6197 6970 -3 2 1108 263 239 57 0 chr6 68680071 68680159 -80836878 + Lx9 LINE L1 7317 7409 -235 2 1108 461 240 8 31 chr6 68680346 68680475 -80836562 + Lx8 LINE L1 6322 6447 -1026 2 1108 3807 74 14 2 chr6 68680505 68681007 -80836030 - L1_Mus1 LINE L1 0 6567 6060 2 1108 234 0 0 0 chr6 68681120 68681146 -80835891 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1108 595 310 35 11 chr6 68681200 68681461 -80835576 + Lx8 LINE L1 6850 7116 -357 2 1109 1204 49 0 0 chr6 68682548 68682691 -80834346 + B1_Mus1 SINE Alu 1 143 -5 2 1109 201 147 29 0 chr6 68682715 68682749 -80834288 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1109 522 114 0 0 chr6 68683170 68683249 -80833788 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1109 328 377 88 0 chr6 68684750 68684909 -80832128 - B3A SINE B2 -18 180 8 2 1109 297 0 0 0 chr6 68685047 68685080 -80831957 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2 1109 207 0 0 0 chr6 68685080 68685103 -80831934 + (TTA)n Simple_repeat Simple_repeat 1 23 0 2 1109 22 0 0 0 chr6 68685420 68685442 -80831595 + AT_rich Low_complexity Low_complexity 1 22 0 2 1109 203 184 0 0 chr6 68686109 68686147 -80830890 + T-rich Low_complexity Low_complexity 1 38 0 2 1109 336 339 87 31 chr6 68687404 68687599 -80829438 - B3 SINE B2 -9 207 2 2 1109 553 258 53 43 chr6 68688554 68688761 -80828276 + Lx8 LINE L1 6198 6406 -1067 2 1109 5698 146 22 7 chr6 68688996 68689977 -80827060 - Lx2 LINE L1 -2 6995 6000 2 1109 1442 228 49 7 chr6 68689979 68690408 -80826629 - L1_Mur3 LINE L1 -451 5429 4983 2 1109 500 307 110 12 chr6 68690472 68690726 -80826311 + Lx6 LINE L1 5930 6208 -1252 2 1109 1183 308 36 25 chr6 68690727 68691205 -80825832 + Lx6 LINE L1 6455 7129 -331 2 1109 489 110 0 0 chr6 68691205 68691278 -80825759 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1109 1183 295 27 16 chr6 68691278 68691585 -80825452 + Lx6 LINE L1 7130 7433 -27 2 1109 336 273 50 105 chr6 68691990 68692248 -80824789 + L1VL1 LINE L1 49 400 -6022 2 1109 411 261 37 0 chr6 68692285 68692419 -80824618 + L1_Mus3 LINE L1 664 802 -5814 2 1109 27785 123 10 24 chr6 68692428 68696883 -80820154 + L1_Mus3 LINE L1 725 5107 -776 2 1109 5547 56 3 1 chr6 68696883 68697586 -80819451 + L1Md_F2 LINE L1 5879 6582 0 2 1109 27785 110 15 9 chr6 68697586 68699094 -80817943 + L1_Mus3 LINE L1 5108 6631 -7 2 1109 258 333 74 67 chr6 68699600 68699735 -80817302 - B3A SINE B2 -62 136 1 2 1109 3599 137 4 77 chr6 68701241 68701960 -80815077 - Lx2A LINE L1 0 7008 6342 2 1109 7228 128 50 18 chr6 68701980 68703303 -80813734 - Lx3A LINE L1 -7 6974 5638 2 1109 759 207 0 134 chr6 68703302 68703525 -80813512 - Lx2A LINE L1 -663 6345 6153 2 1109 233 250 0 91 chr6 68703525 68703591 -80813446 - RLTR22_Mur LTR ERVK -169 1679 1620 2 1109 352 143 0 94 chr6 68703609 68703694 -80813343 + Lx2B LINE L1 6919 6995 -5 2 1109 236 30 0 29 chr6 68703699 68703733 -80813304 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 2 1109 439 250 20 7 chr6 68703849 68703865 -80813172 - L1_Mur2 LINE L1 -2162 3984 3970 2 1109 1634 198 3 3 chr6 68703865 68704184 -80812853 - Lx LINE L1 -17 6637 6319 2 1109 1947 170 90 28 chr6 68704184 68704688 -80812349 - L1_Mur2 LINE L1 -2177 3969 3397 2 1109 264 154 0 0 chr6 68708089 68708141 -80808896 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1109 534 43 0 0 chr6 68708141 68708210 -80808827 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 1109 390 245 99 9 chr6 68710153 68710264 -80806773 + Lx7 LINE L1 7140 7260 -436 2 1109 3525 147 2 35 chr6 68710255 68711165 -80805872 - Lx2 LINE L1 -975 6022 5144 2 1109 5899 161 11 11 chr6 68711165 68711204 -80805833 + Lx2 LINE L1 5935 5970 -1027 2 1109 3379 36 0 2 chr6 68711204 68711597 -80805440 + MTA_Mm LTR MaLR 5 396 0 2 1109 5899 161 11 11 chr6 68711597 68712615 -80804422 + Lx2 LINE L1 5971 6992 -5 2 1109 453 265 50 54 chr6 68712638 68712877 -80804160 + Lx7 LINE L1 7259 7496 -200 2 1109 555 92 0 0 chr6 68712884 68712971 -80804066 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 1109 674 263 128 56 chr6 68714758 68714834 -80802203 - MT2B LTR ERVL 0 601 513 2 1109 351 121 0 0 chr6 68714834 68714892 -80802145 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1109 674 267 120 50 chr6 68714892 68715157 -80801880 - MT2B LTR ERVL -89 512 76 2 1109 1302 253 72 18 chr6 68715198 68715644 -80801393 - Lx4B LINE L1 -8 7050 6581 2 1109 3172 168 2 5 chr6 68715707 68716319 -80800718 - L1_Mur2 LINE L1 -652 5225 4616 2 1109 1724 180 36 0 chr6 68716361 68716722 -80800315 + Lx4B LINE L1 5593 5966 -1092 2 1109 262 320 48 10 chr6 68717415 68717519 -80799518 - MLT1D LTR MaLR -330 175 68 2 1109 181 91 22 43 chr6 68717917 68717963 -80799074 + A-rich Low_complexity Low_complexity 2 46 0 2 1109 264 250 55 55 chr6 68718320 68718430 -80798607 - Lx9 LINE L1 -354 7290 7181 2 1109 366 23 0 0 chr6 68718870 68718913 -80798124 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1109 225 0 0 0 chr6 68720306 68720331 -80796706 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1109 894 123 0 0 chr6 68720456 68720958 -80796079 + (TAGA)n Simple_repeat Simple_repeat 1 502 0 2 1109 517 340 5 5 chr6 68721113 68721329 -80795708 - B3 SINE B2 0 216 1 2 1109 6494 83 5 1 chr6 68721898 68722794 -80794243 + L1VL1 LINE L1 32 930 -5492 2 1109 2061 213 60 9 chr6 68722794 68723258 -80793779 + RLTR26 LTR ERVK 1 488 -154 2 1109 496 261 9 0 chr6 68723281 68723392 -80793645 + RLTR26 LTR ERVK 531 642 0 2 1109 2931 95 2 6 chr6 68723392 68723971 -80793066 + L1VL1 LINE L1 925 1499 -2199 2 1109 33418 44 2 8 chr6 68723975 68728955 -80788082 + L1Md_F2 LINE L1 643 5586 -297 2 1109 7851 55 2 9 chr6 68728955 68729952 -80787085 + L1Md_F2 LINE L1 5587 6576 -6 2 1109 13924 125 41 18 chr6 68729960 68732487 -80784550 + L1_Mm LINE L1 1704 4288 -1595 2 1109 29824 95 8 5 chr6 68732482 68737635 -80779402 + L1Md_F2 LINE L1 417 5585 -298 2 1109 7627 70 0 5 chr6 68737637 68738626 -80778411 + L1Md_F2 LINE L1 5588 6571 -11 2 1109 3503 110 25 3 chr6 68738627 68739195 -80777842 + L1_Mm LINE L1 4280 4859 -1024 2 1109 25 51 0 0 chr6 68739270 68739309 -80777728 + AT_rich Low_complexity Low_complexity 1 39 0 2 1109 885 264 71 52 chr6 68739393 68739801 -80777236 + Lx9 LINE L1 7006 7421 -223 2 1109 360 304 106 30 chr6 68740086 68740351 -80776686 + Lx8 LINE L1 7189 7473 0 2 1109 1140 58 22 39 chr6 68741440 68741620 -80775417 + L1Md_F3 LINE L1 6408 6584 0 2 1109 243 323 0 0 chr6 68741644 68741706 -80775331 + RLTR14 LTR ERV1 3 64 -318 2 1109 1194 322 19 3 chr6 68741706 68742083 -80774954 + Lx6 LINE L1 6907 7289 -171 2 1109 272 27 27 0 chr6 68742172 68742209 -80774828 + (TTA)n Simple_repeat Simple_repeat 1 38 0 3 1109 653 288 18 55 chr6 68742211 68742431 -80774606 + B3 SINE B2 1 212 -4 3 1109 21 57 0 0 chr6 68742431 68742466 -80774571 + AT_rich Low_complexity Low_complexity 1 35 0 3 1109 576 29 0 0 chr6 68742620 68742690 -80774347 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1109 234 169 15 30 chr6 68743099 68743166 -80773871 + (CAAA)n Simple_repeat Simple_repeat 3 68 0 3 1109 198 167 0 0 chr6 68743328 68743364 -80773673 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 3 1109 729 34 0 0 chr6 68743369 68743457 -80773580 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 3 1109 755 269 49 11 chr6 68743459 68743722 -80773315 - Lx4B LINE L1 -17 7041 6769 3 1109 1183 223 6 3 chr6 68743795 68744123 -80772914 + L1_Mur2 LINE L1 1301 1629 -4248 3 1109 1922 174 5 22 chr6 68744110 68744521 -80772516 + L1_Mur2 LINE L1 4342 4745 -1132 3 1109 1841 193 33 20 chr6 68744516 68744908 -80772129 - Lx4B LINE L1 -388 6670 6274 3 1109 189 286 39 39 chr6 68745488 68745539 -80771498 + L2 LINE L2 86 136 -3283 3 1109 4477 225 42 28 chr6 68745825 68745953 -80771084 + Lx2B LINE L1 5810 5934 -1066 3 1109 3254 165 0 2 chr6 68745953 68746492 -80770545 + Lx2 LINE L1 6459 6996 -1 3 1109 4477 225 42 28 chr6 68746492 68747535 -80769502 + Lx2B LINE L1 5935 6997 -3 3 1109 383 232 12 0 chr6 68747536 68747618 -80769419 + ORR1C2 LTR MaLR 297 379 -5 3 1109 761 279 32 58 chr6 68747718 68748098 -80768939 + ETnERV2-int LTR ERVK 17 386 -2928 3 1109 3626 136 90 20 chr6 68748114 68748856 -80768181 + ETnERV2-int LTR ERVK 1071 1864 -5542 3 1109 2841 21 3 0 chr6 68748856 68749181 -80767856 + IAPLTR3 LTR ERVK 1 326 0 3 1109 10304 46 37 68 chr6 68749181 68750700 -80766337 + IAPLTR3-int LTR ERVK 1 1472 -5349 3 1109 12238 22 14 5 chr6 68750698 68752183 -80764854 + IAPLTR3-int LTR ERVK 5304 6801 -20 3 1109 2841 21 3 0 chr6 68752183 68752508 -80764529 + IAPLTR3 LTR ERVK 1 326 0 3 1109 6674 153 55 45 chr6 68752508 68753439 -80763598 + ETnERV2-int LTR ERVK 1859 2773 -4633 3 1109 216 0 0 0 chr6 68753439 68753463 -80763574 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1109 6674 153 55 45 chr6 68753463 68753964 -80763073 + ETnERV2-int LTR ERVK 2774 3305 -4101 3 1109 404 156 91 0 chr6 68753964 68754041 -80762996 + RLTR13D6 LTR ERVK 456 539 -363 3 1109 271 192 40 14 chr6 68754041 68754115 -80762922 + ETnERV2-int LTR ERVK 7331 7406 0 3 1109 2681 114 13 5 chr6 68754115 68754513 -80762524 + RLTR9D LTR ERVK 1 401 -2 3 1109 342 225 38 0 chr6 68754547 68754627 -80762410 + ORR1C2 LTR MaLR 297 379 -5 3 1109 4430 174 19 2 chr6 68759548 68760400 -80756637 + Lx4A LINE L1 5587 6452 -606 3 1109 317 349 5 36 chr6 68761265 68761461 -80755576 - B3A SINE B2 -8 190 1 3 1109 208 70 23 23 chr6 68761805 68761849 -80755188 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 3 1109 3924 69 10 4 chr6 68761925 68762434 -80754603 - RLTR1B LTR ERV1 0 512 1 3 1109 276 250 26 0 chr6 68762668 68762744 -80754293 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1109 5373 122 18 58 chr6 68763133 68764073 -80752964 + RLTR13D6 LTR ERVK 1 902 0 3 1109 2575 87 146 136 chr6 68765571 68766078 -80750959 - RLTR1B LTR ERV1 0 512 1 3 1109 4825 35 22 0 chr6 68766078 68766677 -80750360 - RLTR1B-int LTR ERV1 0 3299 2688 3 1109 17038 77 36 37 chr6 68766675 68768629 -80748408 - RLTR1B-int LTR ERV1 -765 2534 527 3 1109 648 36 0 0 chr6 68768629 68768712 -80748325 + (CTG)n Simple_repeat Simple_repeat 3 85 0 3 1109 17038 77 36 37 chr6 68768712 68769292 -80747745 - RLTR1B-int LTR ERV1 -2773 526 1 3 1109 531 45 0 0 chr6 68769347 68769413 -80747624 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1109 383 281 44 0 chr6 68770447 68770561 -80746476 + Lx8 LINE L1 6288 6406 -1067 3 1109 8166 173 27 11 chr6 68773659 68775502 -80741535 + Lx2B LINE L1 4201 6077 -923 3 1109 23 33 0 0 chr6 68775502 68775532 -80741505 + AT_rich Low_complexity Low_complexity 1 30 0 3 1109 381 43 0 0 chr6 68775552 68775599 -80741438 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1109 838 28 0 0 chr6 68775677 68775784 -80741253 - B1_Mm SINE Alu -37 110 4 3 1109 383 302 101 0 chr6 68775786 68775955 -80741082 - RMER4A LTR ERVK -5 461 276 3 1109 1058 246 31 20 chr6 68776099 68776230 -80740807 - MYSERV6-int LTR ERVK -5482 3477 3348 3 1109 1960 158 3 35 chr6 68776230 68776578 -80740459 - Lx3B LINE L1 -4 6969 6633 3 1109 1058 246 31 20 chr6 68776578 68776795 -80740242 - MYSERV6-int LTR ERVK -5612 3347 3125 3 1109 1098 90 0 0 chr6 68776831 68776987 -80740050 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 3 1109 271 208 53 40 chr6 68776993 68777068 -80739969 - RMER5 LTR ERV1 -378 156 81 3 1109 2716 153 4 2 chr6 68777076 68777527 -80739510 - L1_Mus4 LINE L1 -4 6632 6181 3 1109 1377 317 27 23 chr6 68777843 68778662 -80738375 - MYSERV6-int LTR ERVK -1715 1462 442 3 1109 1144 69 7 0 chr6 68778719 68778864 -80738173 - B1_Mm SINE Alu -1 146 1 3 1109 1898 87 24 3 chr6 68779871 68780161 -80736876 + BGLII LTR ERVK 16 311 -110 3 1109 512 42 14 0 chr6 68780351 68780422 -80736615 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1109 21 36 0 0 chr6 68781395 68781423 -80735614 + AT_rich Low_complexity Low_complexity 1 28 0 3 1109 279 210 86 48 chr6 68781589 68781694 -80735343 - Lx7 LINE L1 -1112 6361 6253 3 1109 28 0 0 0 chr6 68781737 68781765 -80735272 + AT_rich Low_complexity Low_complexity 1 28 0 3 1109 462 318 60 64 chr6 68781818 68781997 -80735040 - L1M2 LINE L1 -819 5324 5134 3 1109 216 0 0 0 chr6 68781997 68782021 -80735016 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 1109 462 318 60 64 chr6 68782021 68782295 -80734742 - L1M2 LINE L1 -1010 5133 4873 3 1109 495 0 0 0 chr6 68782295 68782350 -80734687 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1109 443 105 13 0 chr6 68782350 68782426 -80734611 + L1Md_F2 LINE L1 6492 6568 -14 3 1109 301 297 0 0 chr6 68782489 68782580 -80734457 - L1M2 LINE L1 -3378 2765 2675 3 1109 645 263 6 13 chr6 68782563 68782754 -80734283 - Lx7 LINE L1 -1948 5748 5557 3 1109 1195 117 5 0 chr6 68782770 68782958 -80734079 + Lx LINE L1 5898 6073 -581 3 1109 208 237 0 0 chr6 68782967 68783026 -80734011 + T-rich Low_complexity Low_complexity 1 59 0 3 1109 1553 242 12 37 chr6 68783044 68783473 -80733564 - MTD LTR MaLR 0 419 2 3 1109 265 315 17 52 chr6 68783598 68783772 -80733265 + L1MC LINE L1 5659 5826 -518 3 1109 1802 170 3 3 chr6 68783847 68784172 -80732865 - Lx2 LINE L1 -10 6987 6663 3 1109 393 311 49 25 chr6 68784226 68784348 -80732689 - B3 SINE B2 -82 134 10 3 1109 359 145 14 0 chr6 68784421 68784490 -80732547 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1109 359 21 21 0 chr6 68784549 68784597 -80732440 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1109 7921 121 15 12 chr6 68785695 68787144 -80729893 - L1_Mus2 LINE L1 -161 6405 4938 3 1109 8086 35 0 0 chr6 68787144 68788100 -80728937 + L1Md_T LINE L1 5626 6581 -1 3 1109 7921 143 24 14 chr6 68788100 68788534 -80728503 - L1_Mus2 LINE L1 -946 4937 4505 3 1109 614 103 0 30 chr6 68788537 68788637 -80728400 - L1_Mur2 LINE L1 -1789 4088 3992 3 1109 1403 107 5 0 chr6 68788631 68788836 -80728201 + MusHAL1 LINE L1 1384 1589 -1123 3 1109 1011 253 93 58 chr6 68789182 68789620 -80727417 - RMER16 LTR ERVK 0 533 1 3 1109 859 277 78 37 chr6 68789639 68790048 -80726989 + Lx8 LINE L1 7048 7473 0 3 1109 476 18 0 0 chr6 68790166 68790223 -80726814 - L1_Mus1 LINE L1 -491 6076 6020 3 1109 3585 77 13 0 chr6 68790225 68790722 -80726315 + L1_Mus1 LINE L1 6088 6567 0 3 1109 398 302 78 16 chr6 68790751 68790879 -80726158 - RMER12B LTR ERVK -1268 136 1 3 1109 303 213 0 0 chr6 68791051 68791126 -80725911 + CT-rich Low_complexity Low_complexity 2 76 0 3 1109 533 285 71 7 chr6 68791575 68791782 -80725255 + Lx4B LINE L1 6741 7055 -3 3 1109 271 187 35 34 chr6 68791817 68791923 -80725114 + L1_Mur1 LINE L1 3005 3116 -2770 3 1109 3504 212 32 29 chr6 68791943 68792911 -80724126 + L1_Mur3 LINE L1 3227 4197 -1683 3 1109 2378 268 80 4 chr6 68793236 68793938 -80723099 + Lx9 LINE L1 6327 7081 -563 3 1109 3375 110 19 244 chr6 68793953 68794931 -80722106 + Lx3B LINE L1 4617 5374 -512 3 1109 32731 72 2 6 chr6 68794926 68800184 -80716853 + L1Md_F2 LINE L1 259 5589 -297 3 1109 7839 55 4 2 chr6 68800184 68801178 -80715859 + L1Md_F2 LINE L1 5590 6585 0 3 1109 24920 153 38 14 chr6 68801178 68802443 -80714594 + Lx3B LINE L1 5526 6664 -309 3 1109 3999 158 84 35 chr6 68802443 68803283 -80713754 + RLTR13D6 LTR ERVK 1 882 -20 3 1109 1395 146 0 5 chr6 68803288 68803502 -80713535 + Lx3B LINE L1 6659 6871 -102 3 1109 368 338 15 5 chr6 68803503 68803702 -80713335 + Lx9 LINE L1 7209 7409 -235 3 1109 463 241 24 0 chr6 68803730 68803896 -80713141 + Lx9 LINE L1 7466 7635 -9 3 1109 323 141 13 0 chr6 68804165 68804243 -80712794 + CT-rich Low_complexity Low_complexity 2 80 0 3 1109 345 125 0 0 chr6 68804245 68804301 -80712736 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1109 257 247 156 0 chr6 68804996 68805073 -80711964 + ORR1D1 LTR MaLR 286 374 0 3 1109 4419 136 13 0 chr6 68805273 68805970 -80711067 + Lx LINE L1 5945 6650 -4 3 1109 463 357 7 0 chr6 68806059 68806202 -80710835 + ID_B1 SINE B4 81 224 0 3 1109 1000 209 83 27 chr6 68806507 68806834 -80710203 + ORR1D1 LTR MaLR 1 376 -8 3 1109 26 0 0 0 chr6 68806963 68806989 -80710048 + AT_rich Low_complexity Low_complexity 1 26 0 3 1109 297 91 29 29 chr6 68807201 68807269 -80709768 + (CAAAA)n Simple_repeat Simple_repeat 5 72 0 3 1109 228 266 165 0 chr6 68807625 68807734 -80709303 + Lx9 LINE L1 5781 5907 -1737 3 1109 379 319 241 53 chr6 68808006 68808271 -80708766 - MTEa LTR MaLR -59 320 6 3 1109 1453 342 64 31 chr6 68808320 68809135 -80707902 + Lx8 LINE L1 6223 7064 -409 3 1109 212 0 36 0 chr6 68809185 68809213 -80707824 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3 1109 8248 31 0 0 chr6 68809215 68810427 -80706610 - L1Md_T LINE L1 -18 6564 5353 3 1109 5989 26 0 0 chr6 68810417 68811118 -80705919 + L1Md_T LINE L1 4657 5357 -526 3 1109 219 242 15 15 chr6 68811317 68811384 -80705653 + GA-rich Low_complexity Low_complexity 3 69 0 3 1109 302 342 54 39 chr6 68811615 68811895 -80705142 + L1M2 LINE L1 2111 2394 -3749 3 1109 26 30 0 0 chr6 68812692 68812725 -80704312 + AT_rich Low_complexity Low_complexity 1 33 0 3 1110 5851 224 32 38 chr6 68813553 68815207 -80701830 - Lx5 LINE L1 -1 7049 5397 3 1110 9454 200 73 15 chr6 68815213 68817451 -80699586 - Lx5 LINE L1 -1384 4493 2126 3 1110 934 247 56 45 chr6 68817540 68817807 -80699230 - RLTR25B LTR ERVK -609 419 150 3 1110 231 172 0 33 chr6 68817901 68817961 -80699076 - RMER17C LTR ERVK -8 402 345 3 1110 2422 185 50 2 chr6 68817981 68818446 -80698591 + L1_Mm LINE L1 5086 5572 -311 3 1110 30 45 0 0 chr6 68819576 68819620 -80697417 + AT_rich Low_complexity Low_complexity 1 44 0 3 1110 2918 196 56 23 chr6 68820210 68821001 -80696036 + L1_Mur1 LINE L1 1226 2045 -1867 3 1110 480 18 0 0 chr6 68821005 68821062 -80695975 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1110 267 183 223 11 chr6 68821069 68821163 -80695874 + Lx3C LINE L1 5937 6050 -926 3 1110 4203 171 19 35 chr6 68821163 68821993 -80695044 + Lx3C LINE L1 6160 6976 0 3 1110 38 0 0 0 chr6 68821993 68822031 -80695006 + AT_rich Low_complexity Low_complexity 1 38 0 3 1110 181 77 24 49 chr6 68822065 68822106 -80694931 + A-rich Low_complexity Low_complexity 2 41 0 3 1110 213 39 0 0 chr6 68822401 68822427 -80694610 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 3 1110 238 341 56 24 chr6 68823043 68823169 -80693868 + RLTR10E LTR ERVK 12 141 -170 4 1110 452 308 109 33 chr6 68824772 68825074 -80691963 + L1M2 LINE L1 2110 2434 -3709 4 1110 393 87 14 0 chr6 68825655 68825724 -80691313 + L1Md_F2 LINE L1 6512 6581 -1 4 1110 22 0 0 0 chr6 68826423 68826445 -80690592 + AT_rich Low_complexity Low_complexity 1 22 0 4 1110 21 0 0 0 chr6 68827837 68827858 -80689179 + AT_rich Low_complexity Low_complexity 1 21 0 4 1110 421 315 51 77 chr6 68828123 68828697 -80688340 - L1M2 LINE L1 -1114 5032 4456 4 1110 520 261 15 0 chr6 68828750 68828880 -80688157 + ORR1D2 LTR MaLR 3 134 -236 4 1110 331 294 135 14 chr6 68828895 68829043 -80687994 + ORR1D2 LTR MaLR 205 370 0 4 1110 25 31 0 0 chr6 68829090 68829122 -80687915 + AT_rich Low_complexity Low_complexity 1 32 0 4 1110 491 331 64 16 chr6 68829132 68829319 -80687718 - B3 SINE B2 -17 199 4 4 1110 194 289 20 109 chr6 68830342 68830443 -80686594 + L3 LINE CR1 2125 2216 -2273 4 1110 315 0 0 0 chr6 68830480 68830515 -80686522 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1110 23 0 0 0 chr6 68832170 68832193 -80684844 + AT_rich Low_complexity Low_complexity 1 23 0 4 1110 2633 88 19 3 chr6 68832261 68832638 -80684399 - L1_Mus3 LINE L1 -6 6632 6250 4 1110 387 328 21 78 chr6 68833261 68833403 -80683634 - B3 SINE B2 -82 134 1 4 1110 376 115 0 94 chr6 68834918 68835014 -80682023 - Lx2A LINE L1 0 7008 6922 4 1110 3446 165 35 3 chr6 68835017 68835618 -80681419 - Lx2A LINE L1 -40 6968 6349 4 1110 2004 137 3 32 chr6 68835661 68836009 -80681028 - Lx3A LINE L1 -13 6968 6631 4 1110 1860 157 35 0 chr6 68836012 68836325 -80680712 - Lx3A LINE L1 -195 6459 6136 4 1110 441 0 0 0 chr6 68836338 68836387 -80680650 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1110 3928 163 82 58 chr6 68836474 68837406 -80679631 - RMER17B LTR ERVK 0 958 5 4 1110 2350 251 41 40 chr6 68837421 68838172 -80678865 - RLTR22_Mur LTR ERVK -1096 752 1 4 1110 292 143 0 0 chr6 68838296 68838345 -80678692 - RLTR9B2 LTR ERVK -371 49 1 4 1110 661 93 53 0 chr6 68840377 68840528 -80676509 + (GA)n Simple_repeat Simple_repeat 1 159 0 4 1110 421 239 54 61 chr6 68841722 68841869 -80675168 + MT2B LTR ERVL 131 276 -325 4 1110 1031 52 7 0 chr6 68841760 68841895 -80675142 + B1_Mm SINE Alu 12 147 0 4 1110 486 0 0 0 chr6 68841994 68842048 -80674989 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1110 547 238 8 16 chr6 68842684 68842808 -80674229 + Lx7 LINE L1 7138 7260 -436 4 1110 559 202 0 0 chr6 68842804 68842913 -80674124 - Lx2 LINE L1 -980 6017 5909 4 1110 573 285 12 31 chr6 68842927 68843181 -80673856 + Lx7 LINE L1 7245 7493 -203 4 1110 555 16 0 0 chr6 68843187 68843251 -80673786 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 1110 818 324 14 14 chr6 68844536 68844821 -80672216 + Lx6 LINE L1 7005 7289 -171 4 1110 249 202 64 0 chr6 68844899 68845055 -80671982 + (TA)n Simple_repeat Simple_repeat 1 166 0 4 1110 743 243 62 29 chr6 68845074 68845282 -80671755 + B3 SINE B2 1 215 -1 4 1110 672 48 0 0 chr6 68845450 68845534 -80671503 + (TC)n Simple_repeat Simple_repeat 1 84 0 4 1110 201 121 0 0 chr6 68845539 68845572 -80671465 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1110 214 177 16 31 chr6 68846087 68846151 -80670886 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 1110 201 237 0 0 chr6 68846308 68846367 -80670670 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 4 1110 1049 246 29 14 chr6 68846367 68846647 -80670390 - Lx4B LINE L1 -6 7052 6769 4 1110 1186 229 16 0 chr6 68846722 68847036 -80670001 + Lx4B LINE L1 1303 1621 -4256 4 1110 6830 183 63 28 chr6 68847028 68847310 -80669727 + Lx4B LINE L1 4339 4623 -1254 4 1110 198 0 0 0 chr6 68847310 68847332 -80669705 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1110 6830 181 62 30 chr6 68847332 68848708 -80668329 + Lx4B LINE L1 4624 6054 -1004 4 1110 3400 28 0 0 chr6 68849356 68849752 -80667285 + MTA_Mm LTR MaLR 1 396 0 4 1110 691 318 5 9 chr6 68850061 68850277 -80666760 - B3 SINE B2 0 216 2 4 1110 250 391 23 50 chr6 68851069 68851287 -80665750 - Tigger5 DNA MER2_type -2191 215 4 4 1110 21 57 0 0 chr6 68851992 68852027 -80665010 + AT_rich Low_complexity Low_complexity 1 35 0 4 1110 504 254 150 0 chr6 68852036 68852209 -80664828 - B3 SINE B2 -17 199 1 4 1110 3531 21 0 128 chr6 68854185 68854685 -80662352 - RLTR10C LTR ERVK 0 436 1 4 1110 183 310 0 33 chr6 68854860 68854920 -80662117 - L2 LINE L2 -3267 152 95 4 1110 254 185 19 0 chr6 68855059 68855113 -80661924 + Lx2B LINE L1 6933 6987 -13 4 1110 337 241 60 0 chr6 68855116 68855199 -80661838 + ORR1C2 LTR MaLR 289 376 -8 4 1110 290 311 18 96 chr6 68856270 68856358 -80660679 - MLT1D LTR MaLR -15 490 408 4 1110 1700 110 25 7 chr6 68856358 68856641 -80660396 + L1_Mus2 LINE L1 6278 6565 -1 4 1110 290 311 18 96 chr6 68856641 68856719 -80660318 - MLT1D LTR MaLR -98 407 337 4 1110 1360 245 93 0 chr6 68858170 68858513 -80658524 - ORR1C1 LTR MaLR -3 375 1 4 1110 34 72 0 0 chr6 68858930 68858999 -80658038 + AT_rich Low_complexity Low_complexity 1 69 0 4 1110 320 103 17 0 chr6 68859078 68859136 -80657901 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 1110 21 0 0 0 chr6 68862065 68862086 -80654951 + AT_rich Low_complexity Low_complexity 1 21 0 4 1110 235 158 0 0 chr6 68862103 68862141 -80654896 + Lx4A LINE L1 6771 6808 -250 4 1110 7450 138 25 23 chr6 68862180 68863479 -80653558 - Lx3A LINE L1 -2 6979 5679 4 1110 7453 77 8 11 chr6 68863510 68864730 -80652307 - L1Md_F2 LINE L1 0 6582 5367 4 1110 6444 84 6 16 chr6 68864732 68865648 -80651389 + L1_Mm LINE L1 3423 4328 -1555 4 1110 826 292 30 114 chr6 68866744 68866787 -80650250 + Lx9 LINE L1 6990 7028 -616 4 1110 1623 81 47 4 chr6 68866787 68867022 -80650015 + L1_Mus2 LINE L1 6319 6563 -3 4 1110 826 292 30 114 chr6 68867022 68867202 -80649835 + Lx9 LINE L1 7029 7177 -467 4 1110 2163 112 12 0 chr6 68867202 68867523 -80649514 + ORR1A2 LTR MaLR 1 325 -2 4 1110 826 292 30 114 chr6 68867523 68867770 -80649267 + Lx9 LINE L1 7178 7421 -223 4 1110 400 286 9 0 chr6 68867958 68868070 -80648967 + Lx8 LINE L1 6332 6444 -1029 4 1110 907 340 64 16 chr6 68868262 68868713 -80648324 + Lx8 LINE L1 6871 7343 -130 4 1110 800 284 6 84 chr6 68869505 68869839 -80647198 + Lx3_Mus LINE L1 10 317 -6667 4 1110 264 304 0 0 chr6 68869837 68869916 -80647121 + Lx3_Mus LINE L1 239 317 -6667 4 1110 2195 163 40 0 chr6 68869917 68870346 -80646691 + Lx3_Mus LINE L1 676 1098 -5886 4 1110 2405 57 0 9 chr6 68870335 68870656 -80646381 - L1_Mm LINE L1 -3245 2638 2321 4 1110 13656 58 3 3 chr6 68870652 68873146 -80643891 - L1Md_F3 LINE L1 0 6584 4090 4 1110 2754 108 9 0 chr6 68873149 68873577 -80643460 + Lx3_Mus LINE L1 3775 4206 -1680 4 1110 8076 107 13 11 chr6 68873575 68875228 -80641809 + Lx3_Mus LINE L1 4679 6337 -672 4 1110 348 358 54 54 chr6 68875327 68875513 -80641524 - B3 SINE B2 -28 188 3 4 1110 664 137 14 0 chr6 68876195 68876334 -80640703 + (TG)n Simple_repeat Simple_repeat 1 141 0 4 1110 8079 42 7 0 chr6 68878314 68879474 -80637563 - L1Md_F3 LINE L1 -14 6570 5403 4 1110 660 56 0 0 chr6 68881484 68881573 -80635464 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1110 683 242 83 34 chr6 68881931 68882136 -80634901 + B3 SINE B2 2 216 0 4 1110 455 195 0 0 chr6 68882281 68882363 -80634674 - URR1B DNA MER1_type -1 224 143 4 1110 213 39 0 0 chr6 68882730 68882756 -80634281 + (TC)n Simple_repeat Simple_repeat 2 27 0 4 1110 450 0 0 0 chr6 68882756 68882805 -80634232 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1110 584 215 4 8 chr6 68883002 68883249 -80633788 + GA-rich Low_complexity Low_complexity 1 245 0 4 1110 246 214 0 0 chr6 68883173 68883229 -80633808 + (CAA)n Simple_repeat Simple_repeat 2 57 0 4 1110 5428 149 29 4 chr6 68884677 68885606 -80631431 + RMER17B LTR ERVK 3 954 -4 4 1110 452 333 28 11 chr6 68885624 68885800 -80631237 - Lx8 LINE L1 -1069 6404 6226 4 1110 584 215 4 8 chr6 68887069 68887316 -80629721 + CT-rich Low_complexity Low_complexity 1 245 0 4 1110 246 214 0 0 chr6 68887089 68887145 -80629892 + (TTG)n Simple_repeat Simple_repeat 2 57 0 4 1110 521 90 11 0 chr6 68887513 68887602 -80629435 + (TA)n Simple_repeat Simple_repeat 1 90 0 4 1110 424 219 0 0 chr6 68887989 68888071 -80628966 + URR1B DNA MER1_type 143 224 -1 4 1110 711 232 83 34 chr6 68888216 68888421 -80628616 - B3 SINE B2 0 216 2 4 1110 402 85 0 0 chr6 68888779 68888838 -80628199 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1110 8794 178 29 8 chr6 68892995 68895137 -80621900 + Lx3C LINE L1 4201 6385 -591 4 1110 4208 32 22 0 chr6 68895137 68895643 -80621394 + L1Md_T LINE L1 6066 6582 0 4 1110 5721 215 44 17 chr6 68895643 68896210 -80620827 + Lx3C LINE L1 6386 6976 0 4 1110 252 162 48 36 chr6 68896216 68896299 -80620738 + A-rich Low_complexity Low_complexity 3 86 0 4 1110 265 407 5 68 chr6 68896329 68896519 -80620518 - B3 SINE B2 -38 178 1 4 1110 2131 181 58 46 chr6 68896863 68897384 -80619653 - RLTR11A2 LTR ERVK 0 527 1 4 1110 516 233 17 0 chr6 68897384 68897504 -80619533 - RLTR11B LTR ERVK -328 125 4 4 1110 476 13 12 50 chr6 68897646 68897726 -80619311 + (TAA)n Simple_repeat Simple_repeat 2 78 0 4 1110 365 319 26 0 chr6 68897960 68898073 -80618964 + B1F SINE Alu 13 128 -21 4 1110 2458 94 6 0 chr6 68898114 68898454 -80618583 - L1_Mus1 LINE L1 -14 6553 6212 4 1110 7778 95 20 22 chr6 68898456 68899697 -80617340 - L1Md_F LINE L1 -5404 1115 1 4 1110 26 0 0 0 chr6 68899702 68899728 -80617309 + AT_rich Low_complexity Low_complexity 1 26 0 4 1110 431 306 46 93 chr6 68899809 68900294 -80616743 - L1M2 LINE L1 -837 5306 4836 4 1110 921 140 0 7 chr6 68900294 68900431 -80616606 + B1_Mus1 SINE Alu 3 139 -9 4 1110 228 35 0 0 chr6 68900431 68900460 -80616577 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1110 459 63 0 0 chr6 68900475 68900538 -80616499 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1110 334 303 50 105 chr6 68900538 68900902 -80616135 - L1M2 LINE L1 -1046 4834 4459 4 1110 248 346 0 0 chr6 68901077 68901184 -80615853 - L1M2 LINE L1 -3378 2765 2659 4 1110 1203 287 30 19 chr6 68901183 68901648 -80615389 - L1_Rod LINE L1 -133 5714 5245 4 1110 371 177 0 0 chr6 68901680 68901759 -80615278 - Lx LINE L1 -1 6653 6575 4 1110 4930 78 8 1 chr6 68901759 68902412 -80614625 + L1_Mus1 LINE L1 5739 6395 -172 5 1110 502 202 0 9 chr6 68902687 68902792 -80614245 - URR1B DNA MER1_type -6 219 116 5 1110 386 221 13 148 chr6 68903314 68903463 -80613574 - RLTR41 LTR ERV1 0 446 318 5 1110 32403 109 19 13 chr6 68903463 68909909 -80607128 + L1Md_F2 LINE L1 435 6906 -102 5 1110 23 54 0 0 chr6 68909909 68909946 -80607091 + AT_rich Low_complexity Low_complexity 1 37 0 5 1110 971 130 0 11 chr6 68910019 68910198 -80606839 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 5 1110 345 47 0 0 chr6 68910198 68910241 -80606796 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 5 1110 504 0 0 0 chr6 68910495 68910551 -80606486 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1110 308 352 64 92 chr6 68910581 68910941 -80606096 + RLTR17 LTR ERVK 270 619 -73 5 1110 309 309 42 28 chr6 68911115 68911258 -80605779 - Lx9 LINE L1 -324 7320 7176 5 1110 648 139 0 0 chr6 68911686 68911830 -80605207 + (GA)n Simple_repeat Simple_repeat 1 144 0 5 1110 23 33 0 0 chr6 68912836 68912866 -80604171 + AT_rich Low_complexity Low_complexity 1 30 0 5 1110 189 0 0 0 chr6 68913173 68913194 -80603843 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1110 697 89 186 0 chr6 68913194 68913318 -80603719 - B1_Mus2 SINE Alu 0 147 1 5 1110 321 224 202 31 chr6 68913318 68913350 -80603687 - MT2B LTR ERVL -422 179 126 5 1110 652 266 63 15 chr6 68913664 68913870 -80603167 - B3 SINE B2 0 216 1 5 1110 280 362 91 30 chr6 68914735 68914900 -80602137 - Tigger5 DNA MER2_type -2199 207 33 5 1110 207 100 0 0 chr6 68915144 68915174 -80601863 + (CAT)n Simple_repeat Simple_repeat 1 30 0 5 1110 351 44 0 0 chr6 68915174 68915219 -80601818 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1110 435 19 0 0 chr6 68915228 68915280 -80601757 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1110 207 176 39 19 chr6 68915803 68915855 -80601182 + (CAAAG)n Simple_repeat Simple_repeat 2 54 0 5 1110 506 57 14 0 chr6 68916029 68916099 -80600938 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 5 1110 636 322 34 15 chr6 68916101 68916363 -80600674 - Lx4B LINE L1 -23 7035 6769 5 1110 1136 224 15 30 chr6 68916431 68916763 -80600274 + L1_Mur2 LINE L1 1296 1622 -4255 5 1110 5182 190 40 21 chr6 68916757 68917894 -80599143 + L1_Mur2 LINE L1 4342 5500 -377 5 1110 568 196 9 156 chr6 68917886 68918098 -80598939 + L1_Mur2 LINE L1 3747 3927 -1950 5 1110 3594 196 3 0 chr6 68918087 68918800 -80598237 + L1_Mm LINE L1 4773 5487 -396 5 1110 1169 170 8 21 chr6 68918804 68919044 -80597993 + Lx LINE L1 6412 6648 -6 5 1110 733 291 13 74 chr6 68919365 68919561 -80597476 - B3 SINE B2 0 216 25 5 1110 521 133 9 9 chr6 68919561 68919667 -80597370 + L1_Mus4 LINE L1 6524 6629 -7 5 1110 733 291 13 74 chr6 68919667 68919700 -80597337 - B3 SINE B2 -192 24 1 5 1110 36109 43 1 4 chr6 68920440 68925554 -80591483 + L1Md_T LINE L1 556 5589 -297 5 1110 8069 52 0 0 chr6 68925554 68926549 -80590488 + L1Md_T LINE L1 5590 6584 -1 5 1110 25 0 0 0 chr6 68927282 68927307 -80589730 + AT_rich Low_complexity Low_complexity 1 25 0 5 1110 23 0 0 0 chr6 68927408 68927431 -80589606 + AT_rich Low_complexity Low_complexity 1 23 0 5 1110 266 229 0 0 chr6 68927573 68927621 -80589416 - B3A SINE B2 -150 48 1 5 1110 4720 83 84 1 chr6 68928162 68928848 -80588189 - L1_Mus2 LINE L1 0 6566 5824 5 1110 2118 71 3 0 chr6 68928848 68929130 -80587907 + L1_Mus2 LINE L1 5587 5869 -697 5 1110 1132 225 53 8 chr6 68930017 68930281 -80586756 - Lx LINE L1 0 6654 6379 5 1110 2451 138 25 96 chr6 68930281 68930794 -80586243 + RLTR44C LTR ERVK 1 477 -25 5 1110 1180 131 54 54 chr6 68930805 68931047 -80585990 + RLTR44-int LTR ERVK 1 242 -2570 5 1110 748 110 17 17 chr6 68931067 68931187 -80585850 + RLTR44-int LTR ERVK 816 935 -1877 5 1110 774 103 0 8 chr6 68931183 68931300 -80585737 + RLTR44-int LTR ERVK 816 931 -1881 5 1110 2711 105 75 66 chr6 68931326 68931986 -80585051 + RLTR44-int LTR ERVK 798 1332 -1480 5 1110 2244 133 31 102 chr6 68932064 68932543 -80584494 + RLTR44C LTR ERVK 33 477 -25 5 1110 2930 141 43 10 chr6 68932555 68933062 -80583975 - Lx LINE L1 -271 6383 5860 5 1110 609 236 0 0 chr6 68933056 68933183 -80583854 - Lx3_Mus LINE L1 -551 6458 6332 5 1110 1048 63 27 27 chr6 68933296 68933443 -80583594 + B1_Mus1 SINE Alu 2 148 0 5 1110 382 269 67 0 chr6 68933592 68933711 -80583326 - Lx4B LINE L1 -17 7041 6915 5 1110 2496 199 17 2 chr6 68933741 68934210 -80582827 - Lx4B LINE L1 -309 6749 6274 5 1110 584 149 107 0 chr6 68935208 68935329 -80581708 + Lx3A LINE L1 5808 5941 -1040 5 1110 2726 194 2 10 chr6 68935309 68935799 -80581238 + Lx2 LINE L1 6446 6931 -66 5 1110 2304 245 64 3 chr6 68935796 68936403 -80580634 + Lx2B LINE L1 6344 6987 -13 5 1110 366 217 21 52 chr6 68936406 68936503 -80580534 + ORR1C2 LTR MaLR 289 382 -2 5 1110 354 344 126 37 chr6 68937557 68937937 -80579100 - MLT1D LTR MaLR -15 490 77 5 1110 209 140 34 34 chr6 68938320 68938379 -80578658 + A-rich Low_complexity Low_complexity 2 60 0 5 1110 21 0 0 0 chr6 68938477 68938498 -80578539 + AT_rich Low_complexity Low_complexity 1 21 0 5 1110 1177 264 88 17 chr6 68939152 68939503 -80577534 - ORR1C1 LTR MaLR -2 376 1 5 1110 234 396 0 0 chr6 68939613 68939704 -80577333 - PB1D10 SINE Alu -5 112 22 5 1110 37 62 0 0 chr6 68939924 68939989 -80577048 + AT_rich Low_complexity Low_complexity 1 65 0 5 1110 217 174 22 0 chr6 68940059 68940105 -80576932 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 5 1110 22 0 0 0 chr6 68942824 68942846 -80574191 + AT_rich Low_complexity Low_complexity 1 22 0 5 1110 237 229 16 0 chr6 68942893 68942954 -80574083 - B3 SINE B2 0 216 155 5 1110 1068 133 20 0 chr6 68942954 68943149 -80573888 + MusHAL1 LINE L1 87 285 -2427 5 1110 1729 141 73 111 chr6 68943149 68943643 -80573394 + IAPLTR2_Mm LTR ERVK 1 475 0 5 138 10322 95 50 74 chr6 68943645 68945335 -80571702 + IAPEz-int LTR ERVK 3 1700 -4781 5 1111 6246 65 13 4 chr6 68945330 68946151 -80570886 + IAPEz-int LTR ERVK 5653 6481 0 5 1111 1896 140 106 38 chr6 68946151 68946596 -80570441 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1111 7066 114 5 5 chr6 68946596 68947731 -80569306 + MusHAL1 LINE L1 280 1414 -1298 5 1111 1922 105 196 0 chr6 68947731 68948241 -80568796 + L1_Mus2 LINE L1 5955 6564 -2 5 1111 700 192 6 88 chr6 68948260 68948431 -80568606 + Lx4A LINE L1 6652 6808 -250 5 1111 6932 162 24 9 chr6 68948460 68949739 -80567298 - Lx3A LINE L1 0 6981 5683 5 1111 450 0 0 0 chr6 68949744 68949794 -80567243 + (TTTTG)n Simple_repeat Simple_repeat 4 53 0 5 1111 7706 166 26 94 chr6 68949797 68952720 -80564317 - L1_Mus3 LINE L1 -2 6636 3955 5 1111 5212 106 9 3 chr6 68952720 68953493 -80563544 + L1_Mus2 LINE L1 5788 6565 -1 5 1111 259 416 14 7 chr6 68953919 68954057 -80562980 - Tigger5 DNA MER2_type -2195 211 73 5 1111 251 238 45 62 chr6 68954381 68954493 -80562544 - Lx9 LINE L1 0 7644 7535 5 1111 624 219 30 42 chr6 68954558 68954725 -80562312 + Lx9 LINE L1 6993 7157 -487 5 1111 1979 156 6 0 chr6 68954746 68955061 -80561976 + ORR1A2 LTR MaLR 1 317 -10 5 1111 351 289 75 55 chr6 68955066 68955267 -80561770 + Lx9 LINE L1 7173 7377 -267 5 1111 383 286 0 0 chr6 68955473 68955585 -80561452 + Lx8 LINE L1 6332 6443 -1030 5 1111 647 326 96 17 chr6 68955743 68956099 -80560938 + Lx8 LINE L1 6836 7219 -254 5 1111 786 22 0 0 chr6 68957709 68957801 -80559236 + (GA)n Simple_repeat Simple_repeat 2 93 0 5 1111 1070 298 98 6 chr6 68957834 68958172 -80558865 + Lx6 LINE L1 6881 7249 -211 5 1111 390 355 37 43 chr6 68958293 68958455 -80558582 - B3 SINE B2 -5 211 51 5 1111 351 0 0 0 chr6 68960357 68960396 -80556641 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1111 932 119 7 7 chr6 68961282 68961426 -80555611 - B1_Mus2 SINE Alu -2 145 2 5 1111 248 345 148 24 chr6 68963430 68963721 -80553316 - MLT1D LTR MaLR -107 398 72 5 1111 1137 251 84 26 chr6 68964942 68965286 -80551751 - ORR1C1 LTR MaLR -14 364 1 5 1111 192 269 98 65 chr6 68965535 68965658 -80551379 + L3 LINE CR1 2128 2254 -2235 5 1111 26 50 0 0 chr6 68965699 68965739 -80551298 + AT_rich Low_complexity Low_complexity 1 40 0 5 1111 305 145 16 0 chr6 68965842 68965904 -80551133 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 5 1111 28 29 0 0 chr6 68967505 68967540 -80549497 + AT_rich Low_complexity Low_complexity 1 35 0 5 1111 37850 32 1 1 chr6 68967655 68974078 -80542959 - L1Md_T LINE L1 0 6585 67 5 1111 345 175 20 0 chr6 68974323 68974409 -80542628 - L1_Mur1 LINE L1 -565 5619 5507 5 1111 2119 226 8 8 chr6 68974406 68974918 -80542119 + L1_Mm LINE L1 4984 5495 -388 5 1111 429 130 0 0 chr6 68974987 68975056 -80541981 - L1_Mm LINE L1 -658 5225 5157 5 1111 3262 100 2 2 chr6 68975057 68975519 -80541518 + L1_Mus1 LINE L1 6102 6563 -4 5 1111 289 375 40 29 chr6 68975965 68976138 -80540899 - Tigger5 DNA MER2_type -2194 212 38 5 1111 22 35 0 0 chr6 68976185 68976214 -80540823 + AT_rich Low_complexity Low_complexity 1 29 0 5 1111 263 275 9 27 chr6 68976441 68976553 -80540484 - Lx9 LINE L1 0 7644 7535 5 1111 424 270 16 84 chr6 68976618 68976808 -80540229 + Lx9 LINE L1 6993 7169 -475 5 1111 1917 150 16 0 chr6 68976817 68977131 -80539906 + ORR1A2 LTR MaLR 1 319 -8 5 1111 404 273 54 49 chr6 68977134 68977319 -80539718 + Lx9 LINE L1 7173 7358 -286 5 1111 437 277 0 0 chr6 68977545 68977657 -80539380 + Lx8 LINE L1 6332 6443 -1030 5 1111 534 310 101 20 chr6 68977815 68977945 -80539092 + Lx8 LINE L1 6834 6968 -505 5 1111 4591 55 0 0 chr6 68977945 68978513 -80538524 + L1Md_T LINE L1 6015 6582 0 5 1111 534 310 101 20 chr6 68978513 68978678 -80538359 + Lx8 LINE L1 6969 7153 -320 5 1111 37981 30 1 0 chr6 68979525 68986440 -80530597 - L1Md_T LINE L1 0 6585 1 5 1111 214 216 20 0 chr6 68986568 68986619 -80530418 + (TATG)n Simple_repeat Simple_repeat 2 53 0 5 1111 402 39 0 0 chr6 68986633 68986685 -80530352 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1111 617 36 0 12 chr6 68987577 68987662 -80529375 + (TTTTG)n Simple_repeat Simple_repeat 2 85 0 5 1111 1045 96 0 0 chr6 68987664 68987800 -80529237 - B1_Mus2 SINE Alu -10 137 2 5 1111 297 328 155 19 chr6 68989810 68990068 -80526969 - MLT1D LTR MaLR -107 398 106 5 1111 987 261 114 24 chr6 68991296 68991630 -80525407 - ORR1C1 LTR MaLR -14 364 1 5 1111 21 100 0 0 chr6 68992093 68992163 -80524874 + AT_rich Low_complexity Low_complexity 1 70 0 5 1111 777 155 0 0 chr6 68992186 68992334 -80524703 + (TAGA)n Simple_repeat Simple_repeat 4 151 0 5 1111 21 57 0 0 chr6 68993937 68993972 -80523065 + AT_rich Low_complexity Low_complexity 1 35 0 5 1111 343 180 25 15 chr6 68994328 68994421 -80522616 - L1_Mur1 LINE L1 -566 5613 5507 5 1111 2300 201 8 14 chr6 68994410 68994920 -80522117 + L1_Mur1 LINE L1 4978 5484 -393 5 1111 474 101 0 0 chr6 68994994 68995063 -80521974 - L1_Mm LINE L1 -658 5225 5157 6 1111 3077 120 7 2 chr6 68995064 68995524 -80521513 + L1_Mus1 LINE L1 6102 6563 -4 6 1111 304 377 30 30 chr6 68995972 68996139 -80520898 - Tigger5 DNA MER2_type -2202 204 38 6 1111 430 257 26 79 chr6 68996604 68996794 -80520243 + Lx9 LINE L1 6990 7169 -475 6 1111 2024 131 16 0 chr6 68996803 68997117 -80519920 + ORR1A2 LTR MaLR 1 319 -8 6 1111 467 268 37 43 chr6 68997120 68997307 -80519730 + Lx9 LINE L1 7173 7358 -286 6 1111 347 312 0 0 chr6 68997534 68997646 -80519391 + Lx8 LINE L1 6332 6443 -1030 6 1111 649 311 80 10 chr6 68997814 68998103 -80518934 + Lx8 LINE L1 6845 7153 -320 6 1111 522 0 0 0 chr6 68999779 68999837 -80517200 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 1111 450 0 0 0 chr6 68999838 68999888 -80517149 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1111 291 267 47 0 chr6 68999911 68999997 -80517040 + Lx6 LINE L1 6870 6959 -501 6 1111 328 236 79 0 chr6 69000004 69000131 -80516906 + Lx7 LINE L1 6978 7114 -582 1 1111 246 286 167 8 chr6 69000139 69000259 -80516778 + Lx7 LINE L1 7373 7511 -185 1 1111 424 329 48 42 chr6 69000551 69000716 -80516321 - B3 SINE B2 0 216 51 2 1111 203 213 21 0 chr6 69002592 69002639 -80514398 + (TATG)n Simple_repeat Simple_repeat 2 49 0 3 1111 432 82 0 0 chr6 69002649 69002710 -80514327 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1111 1094 76 7 0 chr6 69003614 69003759 -80513278 - B1_Mus2 SINE Alu 0 147 2 5 1111 2763 88 60 8 chr6 69004627 69004691 -80512346 - L1Md_F2 LINE L1 -12 6570 6507 6 1111 189 74 0 0 chr6 69004691 69004718 -80512319 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 7 1111 2763 88 60 8 chr6 69004718 69005052 -80511985 - L1Md_F2 LINE L1 -76 6506 6152 6 1111 4299 35 0 4 chr6 69005071 69005582 -80511455 - L1Md_T LINE L1 -2 6580 6072 8 1111 251 360 157 8 chr6 69006599 69006854 -80510183 - MLT1D LTR MaLR -107 398 106 9 1111 1160 241 93 35 chr6 69008101 69008445 -80508592 - ORR1C1 LTR MaLR -14 364 1 1 1111 287 130 19 0 chr6 69009000 69009054 -80507983 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 1111 21 57 0 0 chr6 69010641 69010676 -80506361 + AT_rich Low_complexity Low_complexity 1 35 0 1 1111 257 178 0 0 chr6 69011065 69011110 -80505927 - L1_Mur1 LINE L1 -331 5555 5511 1 1111 2108 211 10 14 chr6 69011114 69011628 -80505409 + L1_Mm LINE L1 4984 5495 -388 1 1111 441 101 0 0 chr6 69011698 69011767 -80505270 - L1_Mm LINE L1 -658 5225 5157 1 1111 3170 90 13 36 chr6 69011768 69012241 -80504796 + L1_Mus1 LINE L1 6102 6563 -4 1 1111 269 414 8 8 chr6 69012691 69012820 -80504217 - Tigger5 DNA MER2_type -2202 204 76 1 1111 489 236 25 76 chr6 69013335 69013532 -80503505 + Lx9 LINE L1 6993 7179 -465 1 1111 1913 148 16 0 chr6 69013533 69013843 -80503194 + ORR1A2 LTR MaLR 3 317 -10 1 1111 341 304 0 0 chr6 69014262 69014374 -80502663 + Lx8 LINE L1 6332 6443 -1030 2 1111 498 323 82 21 chr6 69014532 69014823 -80502214 + Lx8 LINE L1 6834 7142 -331 2 1111 3691 18 121 0 chr6 69015282 69015722 -80501315 + MT2_Mm LTR ERVL 1 493 0 2 1111 372 94 0 0 chr6 69016916 69016969 -80500068 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1111 234 0 0 0 chr6 69016969 69016994 -80500043 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1111 991 281 101 6 chr6 69017017 69017364 -80499673 + Lx6 LINE L1 6870 7249 -211 2 1111 447 329 36 48 chr6 69017661 69017827 -80499210 - B3 SINE B2 -5 211 48 2 1111 11085 39 23 3 chr6 69017914 69019362 -80497675 + L1Md_F2 LINE L1 4109 5585 -298 2 1111 7809 56 5 3 chr6 69019363 69020353 -80496684 + L1Md_F2 LINE L1 5587 6578 -4 2 1111 6734 79 16 5 chr6 69020418 69021628 -80495409 - L1Md_F2 LINE L1 -1 6581 5353 2 1111 5512 87 0 4 chr6 69021628 69022428 -80494609 + L1_Mm LINE L1 4380 5176 -707 2 1111 449 17 17 0 chr6 69022535 69022593 -80494444 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 2 1111 487 271 8 16 chr6 69022671 69022795 -80494242 + B3 SINE B2 94 216 0 3 1111 21 0 0 0 chr6 69022802 69022823 -80494214 + AT_rich Low_complexity Low_complexity 1 21 0 3 1111 23 54 0 0 chr6 69022895 69022932 -80494105 + AT_rich Low_complexity Low_complexity 1 37 0 3 1111 360 0 0 0 chr6 69022958 69022998 -80494039 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1111 200 182 43 57 chr6 69023513 69023583 -80493454 + A-rich Low_complexity Low_complexity 4 72 0 3 1111 577 303 33 26 chr6 69023774 69024045 -80492992 - Lx4B LINE L1 -17 7041 6769 3 1111 837 244 58 6 chr6 69024120 69024319 -80492718 + L1_Mur2 LINE L1 1303 1513 -4364 3 1111 864 74 0 0 chr6 69024319 69024440 -80492597 + (GAA)n Simple_repeat Simple_repeat 3 123 0 3 1111 837 244 58 6 chr6 69024440 69024566 -80492471 + L1_Mur2 LINE L1 1514 1644 -4233 3 1111 4651 204 36 29 chr6 69024538 69025425 -80491612 + L1_Mur2 LINE L1 4342 5250 -627 3 1111 1064 106 0 0 chr6 69025425 69025566 -80491471 + B1_Mus2 SINE Alu 2 142 -5 3 1111 188 34 0 33 chr6 69025569 69025599 -80491438 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1111 4651 204 36 29 chr6 69025599 69025866 -80491171 + L1_Mur2 LINE L1 5251 5508 -369 3 1111 8250 181 12 7 chr6 69025846 69025955 -80491082 + L1_Mm LINE L1 3748 3863 -2020 4 1111 191 36 36 0 chr6 69025955 69025983 -80491054 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1111 8250 181 12 7 chr6 69025983 69027602 -80489435 + L1_Mm LINE L1 3864 5484 -399 4 1111 1249 177 4 20 chr6 69027602 69027850 -80489187 + Lx LINE L1 6405 6648 -6 4 1111 773 312 4 53 chr6 69028165 69028358 -80488679 - B3 SINE B2 0 216 31 4 1111 540 133 9 9 chr6 69028358 69028464 -80488573 + L1_Mus4 LINE L1 6524 6629 -7 4 1111 773 312 4 53 chr6 69028464 69028497 -80488540 - B3 SINE B2 -186 30 1 4 1111 518 236 24 122 chr6 69030231 69030395 -80486642 - MTEa LTR MaLR -12 367 220 4 1111 297 0 0 0 chr6 69030449 69030482 -80486555 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1111 372 94 0 0 chr6 69030482 69030534 -80486503 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1111 517 311 0 8 chr6 69030552 69030685 -80486352 - MTEa LTR MaLR -197 182 51 4 1111 280 355 145 0 chr6 69030553 69030705 -80486332 - MLT2B3 LTR ERVL -342 212 39 4 1111 4532 68 2 12 chr6 69030707 69031307 -80485730 - L1Md_F2 LINE L1 -12 6570 5977 4 1111 23 0 0 0 chr6 69031486 69031509 -80485528 + AT_rich Low_complexity Low_complexity 1 23 0 5 1111 542 63 0 12 chr6 69031569 69031649 -80485388 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1111 471 282 99 6 chr6 69031696 69031878 -80485159 - B3 SINE B2 -17 199 1 5 1111 182 154 0 55 chr6 69032407 69032462 -80484575 + T-rich Low_complexity Low_complexity 1 52 0 5 1111 1359 106 74 13 chr6 69032472 69032702 -80484335 - L1_Mus2 LINE L1 -2 6564 6321 5 1111 526 229 24 122 chr6 69032714 69032878 -80484159 - MTEa LTR MaLR -12 367 220 5 1111 315 0 0 0 chr6 69032932 69032967 -80484070 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1111 444 82 0 0 chr6 69032967 69033027 -80484010 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1111 517 311 0 8 chr6 69033045 69033178 -80483859 - MTEa LTR MaLR -197 182 51 5 1111 280 355 145 0 chr6 69033046 69033198 -80483839 - MLT2B3 LTR ERVL -342 212 39 5 1111 4532 68 2 12 chr6 69033200 69033800 -80483237 - L1Md_F2 LINE L1 -12 6570 5977 5 1111 23 0 0 0 chr6 69033979 69034002 -80483035 + AT_rich Low_complexity Low_complexity 1 23 0 6 1111 542 63 0 12 chr6 69034062 69034142 -80482895 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1111 471 282 99 6 chr6 69034189 69034371 -80482666 - B3 SINE B2 -17 199 1 6 1111 182 154 0 55 chr6 69034900 69034955 -80482082 + T-rich Low_complexity Low_complexity 1 52 0 6 1111 4903 99 36 1 chr6 69034965 69035681 -80481356 - L1_Mus2 LINE L1 -2 6564 5824 6 1111 1986 82 0 0 chr6 69035683 69035964 -80481073 + L1_Mus2 LINE L1 5589 5869 -697 6 1111 20211 26 0 0 chr6 69036830 69039991 -80477046 - L1Md_A LINE L1 -1 6581 3421 6 1111 4366 14 0 12 chr6 69039991 69040490 -80476547 - MT2_Mm LTR ERVL 0 493 1 6 1111 302 0 0 0 chr6 69040490 69040528 -80476509 - MERVL-int LTR ERVL 0 5485 5448 6 1111 370 157 58 46 chr6 69040528 69040615 -80476422 - ORR1A3-int LTR MaLR -1323 640 553 6 1111 45154 16 8 0 chr6 69040615 69045935 -80471102 - MERVL-int LTR ERVL -125 5360 1 6 1111 4406 10 0 12 chr6 69045935 69046434 -80470603 - MT2_Mm LTR ERVL 0 493 1 6 1111 17508 32 3 13 chr6 69046434 69049483 -80467554 - L1Md_A LINE L1 -2458 3425 413 6 1111 4296 153 37 5 chr6 69049531 69050139 -80466898 - Lx LINE L1 -7 6647 6015 6 1111 3358 13 37 0 chr6 69050139 69050521 -80466516 - MTA_Mm LTR MaLR 0 396 1 7 1111 4296 153 37 5 chr6 69050521 69050669 -80466368 - Lx LINE L1 -640 6014 5867 6 1111 585 186 0 0 chr6 69050674 69050792 -80466245 - Lx3_Mus LINE L1 -551 6458 6341 7 1111 7120 74 15 1 chr6 69050876 69052189 -80464848 - L1Md_F2 LINE L1 -14 6568 5244 7 1111 225 0 0 0 chr6 69052189 69052214 -80464823 + (TA)n Simple_repeat Simple_repeat 2 26 0 7 1111 6769 93 21 0 chr6 69052214 69052609 -80464428 - L1Md_F2 LINE L1 -640 5243 4840 7 1111 985 98 27 20 chr6 69052733 69052879 -80464158 + B1_Mus1 SINE Alu 2 148 0 7 1111 1089 72 7 0 chr6 69053116 69053255 -80463782 + B1_Mus2 SINE Alu 2 141 -6 7 1111 204 40 0 0 chr6 69053722 69053747 -80463290 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 7 1111 291 265 12 0 chr6 69053754 69053837 -80463200 - Lx4B LINE L1 -17 7041 6958 7 1111 2298 195 11 6 chr6 69053906 69054375 -80462662 - Lx4B LINE L1 -314 6744 6274 7 1111 708 145 15 0 chr6 69055318 69055449 -80461588 + Lx3A LINE L1 5809 5941 -1040 7 1111 2434 177 0 9 chr6 69055429 69055869 -80461168 + Lx2 LINE L1 6446 6881 -116 7 1111 2314 246 55 13 chr6 69055860 69056494 -80460543 + Lx2B LINE L1 6315 6975 -25 8 1111 375 252 18 45 chr6 69056494 69056606 -80460431 + ORR1C2 LTR MaLR 274 382 -2 8 1111 355 340 139 19 chr6 69057668 69058034 -80459003 - MLT1D LTR MaLR -24 481 72 8 1111 1051 260 95 35 chr6 69059236 69059582 -80457455 - ORR1C1 LTR MaLR -11 367 1 8 1111 62 26 0 0 chr6 69060045 69060121 -80456916 + AT_rich Low_complexity Low_complexity 1 76 0 8 1111 207 0 0 0 chr6 69060142 69060165 -80456872 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 8 1111 483 130 0 0 chr6 69060165 69060264 -80456773 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 8 1111 21 57 0 0 chr6 69061880 69061915 -80455122 + AT_rich Low_complexity Low_complexity 1 35 0 8 1111 304 188 7 0 chr6 69062303 69062369 -80454668 - L1_Mur1 LINE L1 -647 5595 5507 8 1111 2195 203 38 8 chr6 69062364 69062861 -80454176 + L1_Mm LINE L1 4984 5495 -388 8 1111 421 121 0 0 chr6 69062930 69062996 -80454041 - L1_Mm LINE L1 -658 5225 5160 9 1111 3177 108 11 0 chr6 69062996 69063452 -80453585 + L1_Mus1 LINE L1 6102 6562 -5 9 1111 558 249 15 72 chr6 69064563 69064758 -80452279 + Lx9 LINE L1 6993 7176 -468 9 1111 1955 150 16 0 chr6 69064760 69065074 -80451963 + ORR1A2 LTR MaLR 1 319 -8 9 1111 261 322 43 37 chr6 69065077 69065264 -80451773 + Lx9 LINE L1 7173 7360 -284 9 1111 341 321 0 0 chr6 69065490 69065602 -80451435 + Lx8 LINE L1 6332 6443 -1030 9 1111 623 309 99 7 chr6 69065760 69066053 -80450984 + Lx8 LINE L1 6834 7153 -320 9 1111 3348 57 0 0 chr6 69066788 69067206 -80449831 - L1Md_F2 LINE L1 -14 6568 6151 9 1111 262 146 45 0 chr6 69068170 69068259 -80448778 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 9 1111 432 0 0 0 chr6 69068265 69068313 -80448724 + (GA)n Simple_repeat Simple_repeat 2 49 0 9 1111 1005 294 101 6 chr6 69068337 69068683 -80448354 + Lx6 LINE L1 6871 7249 -211 9 1111 2264 112 14 36 chr6 69069033 69069395 -80447642 - IAPEY2_LTR LTR ERVK -3 354 1 9 1111 32614 80 7 5 chr6 69069395 69073762 -80443275 - IAPEy-int LTR ERVK 0 7513 3136 9 138 15165 121 18 8 chr6 69073755 69076123 -80440914 - IAPEy-int LTR ERVK -5123 2390 1 9 1112 2215 118 14 36 chr6 69076128 69076490 -80440547 - IAPEY2_LTR LTR ERVK -3 354 1 9 1112 701 301 122 38 chr6 69076512 69076964 -80440073 + Lx8 LINE L1 6966 7455 -18 1 1112 22 35 0 0 chr6 69077425 69077454 -80439583 + AT_rich Low_complexity Low_complexity 1 29 0 1 1112 247 229 11 204 chr6 69077977 69078065 -80438972 + RLTR14 LTR ERV1 1 71 -311 1 1112 22 0 0 0 chr6 69078114 69078136 -80438901 + AT_rich Low_complexity Low_complexity 1 22 0 1 1112 458 17 17 0 chr6 69078292 69078351 -80438686 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 1 1112 485 280 8 8 chr6 69078424 69078543 -80438494 + B3 SINE B2 94 212 -4 1 1112 22 56 0 0 chr6 69078652 69078688 -80438349 + AT_rich Low_complexity Low_complexity 1 36 0 1 1112 456 35 0 0 chr6 69078714 69078772 -80438265 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1112 291 85 0 0 chr6 69079558 69079605 -80437432 + (CTAA)n Simple_repeat Simple_repeat 1 47 0 1 1112 638 316 39 18 chr6 69079605 69079879 -80437158 - Lx4B LINE L1 -9 7049 6769 1 1112 834 240 51 19 chr6 69079957 69080162 -80436875 + L1_Mur2 LINE L1 1299 1511 -4366 1 1112 867 20 0 0 chr6 69080162 69080263 -80436774 + (GAA)n Simple_repeat Simple_repeat 2 102 0 1 1112 834 240 51 19 chr6 69080263 69080371 -80436666 + L1_Mur2 LINE L1 1512 1621 -4256 1 1112 5126 190 29 54 chr6 69080365 69081277 -80435760 + L1_Mur2 LINE L1 4342 5254 -623 1 1112 1116 75 0 7 chr6 69081277 69081424 -80435613 + B1_Mus2 SINE Alu 2 147 0 1 1112 5126 190 29 54 chr6 69081424 69081708 -80435329 + L1_Mur2 LINE L1 5255 5508 -369 1 1112 7557 199 23 13 chr6 69081696 69081796 -80435241 + L1_Mm LINE L1 3756 3862 -2021 1 1112 191 36 36 0 chr6 69081796 69081824 -80435213 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1112 7557 199 23 13 chr6 69081824 69083435 -80433602 + L1_Mm LINE L1 3863 5483 -400 1 1112 1211 177 4 20 chr6 69083435 69083683 -80433354 + Lx LINE L1 6405 6648 -6 1 1112 830 296 0 53 chr6 69084025 69084219 -80432818 - B3 SINE B2 0 216 34 1 1112 541 114 0 19 chr6 69084219 69084326 -80432711 + L1_Mus4 LINE L1 6524 6628 -8 1 1112 830 296 0 53 chr6 69084326 69084359 -80432678 - B3 SINE B2 -183 33 1 1 1112 227 54 0 26 chr6 69086032 69086070 -80430967 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1112 25 0 0 0 chr6 69086073 69086098 -80430939 + AT_rich Low_complexity Low_complexity 1 25 0 1 1112 307 337 157 0 chr6 69086116 69086288 -80430749 - B3 SINE B2 -17 199 1 1 1112 4732 82 82 1 chr6 69086831 69087513 -80429524 - L1_Mus2 LINE L1 0 6566 5830 1 1112 2000 89 3 0 chr6 69087516 69087798 -80429239 + L1_Mus2 LINE L1 5587 5869 -697 1 1112 1073 218 52 22 chr6 69088688 69088956 -80428081 - Lx LINE L1 0 6654 6379 1 1112 2460 134 25 96 chr6 69088956 69089469 -80427568 + RLTR44C LTR ERVK 1 477 -25 1 1112 1021 146 60 51 chr6 69089480 69089696 -80427341 + RLTR44-int LTR ERVK 1 218 -2594 1 1112 838 86 0 8 chr6 69089716 69089833 -80427204 + RLTR44-int LTR ERVK 816 931 -1881 1 1112 640 138 30 30 chr6 69089873 69090007 -80427030 + RLTR44-int LTR ERVK 798 931 -1881 1 1112 1885 156 23 153 chr6 69090018 69090633 -80426404 + RLTR44-int LTR ERVK 798 1332 -1480 1 1112 542 299 26 56 chr6 69090703 69090972 -80426065 + IAPEz-int LTR ERVK 3423 3683 -2798 1 1112 4587 76 0 0 chr6 69090983 69091552 -80425485 + RLTR44-int LTR ERVK 2244 2812 0 1 1112 2489 132 27 96 chr6 69091552 69092064 -80424973 + RLTR44C LTR ERVK 1 477 -25 1 1112 2904 161 40 21 chr6 69092076 69092704 -80424333 - Lx LINE L1 -558 6451 5817 1 1112 1064 56 27 27 chr6 69092817 69092964 -80424073 + B1_Mus1 SINE Alu 2 148 0 1 1112 230 115 19 0 chr6 69092976 69093028 -80424009 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 1 1112 314 272 48 0 chr6 69093126 69093229 -80423808 - Lx4B LINE L1 -36 7022 6915 1 1112 2141 234 23 6 chr6 69093250 69093735 -80423302 - Lx4B LINE L1 -292 6766 6274 1 1112 195 42 0 0 chr6 69094336 69094360 -80422677 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1112 4362 233 61 11 chr6 69094698 69094802 -80422235 + Lx2B LINE L1 5816 5919 -1081 1 1112 2780 200 9 9 chr6 69094802 69095347 -80421690 + Lx2 LINE L1 6446 6990 -7 1 1112 4362 233 61 11 chr6 69095347 69096358 -80420679 + Lx2B LINE L1 5920 6987 -13 1 1112 368 255 0 11 chr6 69096361 69096456 -80420581 + ORR1C2 LTR MaLR 289 382 -2 1 1112 1905 115 25 19 chr6 69097218 69097538 -80419499 - RLTRETN_Mm LTR ERVK 0 322 1 1 1112 34251 45 1 13 chr6 69097538 69101838 -80415199 - MMETn-int LTR ERVK 0 4844 594 1 1112 312 83 0 0 chr6 69101839 69101887 -80415150 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1112 3509 60 9 7 chr6 69101887 69102337 -80414700 - MMETn-int LTR ERVK -2863 451 1 1 1112 1886 105 28 22 chr6 69102337 69102657 -80414380 - RLTRETN_Mm LTR ERVK 0 322 1 1 1112 252 357 117 34 chr6 69102926 69103312 -80413725 - MLT1D LTR MaLR -11 494 77 1 1112 1124 274 85 20 chr6 69104527 69104880 -80412157 - ORR1C1 LTR MaLR -2 376 1 1 1112 226 396 0 0 chr6 69104989 69105080 -80411957 - PB1D10 SINE Alu -5 112 22 1 1112 37 62 0 0 chr6 69105300 69105365 -80411672 + AT_rich Low_complexity Low_complexity 1 65 0 1 1112 212 59 29 0 chr6 69105443 69105477 -80411560 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1 1112 21 0 0 0 chr6 69108185 69108206 -80408831 + AT_rich Low_complexity Low_complexity 1 21 0 1 1112 266 197 16 0 chr6 69108255 69108316 -80408721 - B3 SINE B2 0 216 155 1 1112 13727 99 23 56 chr6 69108316 69112955 -80404082 + L1Md_T LINE L1 1203 5586 -297 1 1112 8434 34 0 0 chr6 69112955 69113949 -80403088 + L1Md_T LINE L1 5587 6580 -2 1 1112 21 0 0 0 chr6 69114010 69114031 -80403006 + AT_rich Low_complexity Low_complexity 1 21 0 1 1112 3819 122 5 0 chr6 69115353 69115966 -80401071 + L1_Mm LINE L1 2001 2616 -3267 1 1112 3373 97 186 0 chr6 69115963 69116501 -80400536 + L1_Mus2 LINE L1 5927 6564 -2 1 1112 630 209 18 71 chr6 69116518 69116688 -80400349 + Lx4A LINE L1 6648 6808 -250 1 1112 21 0 0 0 chr6 69116697 69116718 -80400319 + AT_rich Low_complexity Low_complexity 1 21 0 1 1112 6995 156 27 9 chr6 69116718 69117995 -80399042 - Lx3A LINE L1 0 6981 5682 1 1112 5874 147 56 1 chr6 69118012 69119091 -80397946 - L1_Mus3 LINE L1 -2 6636 5502 1 1112 2166 182 24 2 chr6 69119090 69119547 -80397490 + L1_Mur2 LINE L1 4979 5445 -432 1 1112 6896 141 7 6 chr6 69119626 69120932 -80396105 - Lx3A LINE L1 -661 5222 3949 1 1112 5072 119 8 3 chr6 69120932 69121706 -80395331 + L1_Mus2 LINE L1 5788 6565 -1 1 1112 290 420 8 8 chr6 69122166 69122298 -80394739 - Tigger5 DNA MER2_type -2202 204 73 1 1112 237 294 9 27 chr6 69122635 69122747 -80394290 - Lx9 LINE L1 0 7644 7535 1 1112 537 228 17 105 chr6 69122812 69122993 -80394044 + Lx9 LINE L1 6993 7157 -487 1 1112 2026 147 6 0 chr6 69123014 69123328 -80393709 + ORR1A2 LTR MaLR 1 316 -11 1 1112 335 328 34 53 chr6 69123334 69123543 -80393494 + Lx9 LINE L1 7173 7377 -267 1 1112 377 284 0 0 chr6 69123749 69123858 -80393179 + Lx8 LINE L1 6332 6440 -1033 1 1112 656 320 87 70 chr6 69124021 69124481 -80392556 + Lx8 LINE L1 6836 7303 -170 1 1112 183 80 0 0 chr6 69125972 69125997 -80391040 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 1112 207 0 0 0 chr6 69125997 69126019 -80391018 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1112 414 0 0 0 chr6 69126019 69126064 -80390973 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1112 1031 298 43 6 chr6 69126087 69126411 -80390626 + Lx6 LINE L1 6870 7205 -255 1 1112 463 323 42 42 chr6 69126553 69126718 -80390319 - B3 SINE B2 -1 215 51 1 1112 390 21 0 0 chr6 69128632 69128679 -80388358 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1112 1023 104 7 0 chr6 69129572 69129716 -80387321 - B1_Mus2 SINE Alu -1 146 2 1 1112 1127 257 84 26 chr6 69133232 69133576 -80383461 - ORR1C1 LTR MaLR -14 364 1 1 1112 180 269 98 65 chr6 69133825 69133948 -80383089 + L3 LINE CR1 2128 2254 -2235 1 1112 29 108 0 0 chr6 69133987 69134107 -80382930 + AT_rich Low_complexity Low_complexity 1 120 0 1 1112 338 129 16 0 chr6 69134132 69134194 -80382843 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1 1112 28 29 0 0 chr6 69135810 69135845 -80381192 + AT_rich Low_complexity Low_complexity 1 35 0 1 1112 361 239 45 0 chr6 69136207 69136295 -80380742 - L1M4 LINE L1 -565 5619 5528 1 1112 2110 226 8 8 chr6 69136290 69136802 -80380235 + L1_Mm LINE L1 4984 5495 -388 1 1112 473 101 0 0 chr6 69136871 69136940 -80380097 - L1_Mm LINE L1 -658 5225 5157 1 1112 3150 109 11 0 chr6 69136941 69137401 -80379636 + L1_Mus1 LINE L1 6102 6566 -1 1 1112 279 409 22 7 chr6 69137839 69137977 -80379060 - Tigger5 DNA MER2_type -2194 212 73 1 1112 511 260 15 77 chr6 69138486 69138682 -80378355 + Lx9 LINE L1 6993 7176 -468 1 1112 2024 116 26 0 chr6 69138684 69138995 -80378042 + ORR1A2 LTR MaLR 1 319 -8 1 1112 330 292 62 51 chr6 69138998 69139175 -80377862 + Lx9 LINE L1 7173 7351 -293 1 1112 423 270 9 0 chr6 69139407 69139518 -80377519 + Lx8 LINE L1 6332 6443 -1030 1 1112 582 312 94 11 chr6 69139686 69139961 -80377076 + Lx8 LINE L1 6845 7142 -331 1 1112 214 222 22 0 chr6 69140927 69141017 -80376020 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 1112 1068 76 7 0 chr6 69141924 69142069 -80374968 - B1_Mus2 SINE Alu 0 147 2 1 1112 307 337 157 14 chr6 69143952 69144238 -80372799 - MLT1D LTR MaLR -107 398 72 1 1112 1124 259 87 29 chr6 69145451 69145797 -80371240 - ORR1C1 LTR MaLR -12 366 1 1 1112 3812 70 0 0 chr6 69146221 69146720 -80370317 + L1Md_F2 LINE L1 6079 6577 -5 1 1112 26 64 0 0 chr6 69146817 69146864 -80370173 + AT_rich Low_complexity Low_complexity 1 47 0 1 1112 293 136 15 0 chr6 69146885 69146951 -80370086 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1 1112 21 57 0 0 chr6 69148564 69148599 -80368438 + AT_rich Low_complexity Low_complexity 1 35 0 1 1112 272 178 0 0 chr6 69148988 69149033 -80368004 - L1_Mur1 LINE L1 -331 5555 5511 1 1112 2489 189 6 16 chr6 69149037 69149543 -80367494 + L1_Mur1 LINE L1 4978 5478 -399 1 1112 484 76 0 0 chr6 69149625 69149691 -80367346 - L1_Mm LINE L1 -661 5222 5157 1 1112 3196 92 11 36 chr6 69149692 69150166 -80366871 + L1_Mus1 LINE L1 6102 6563 -4 1 1112 328 370 30 30 chr6 69150608 69150775 -80366262 - Tigger5 DNA MER2_type -2202 204 38 1 1112 603 243 15 72 chr6 69151247 69151442 -80365595 + Lx9 LINE L1 6993 7176 -468 1 1112 1798 170 16 0 chr6 69151444 69151756 -80365281 + ORR1A2 LTR MaLR 1 317 -10 1 1112 325 290 54 54 chr6 69151761 69151947 -80365090 + Lx9 LINE L1 7173 7358 -286 1 1112 382 304 0 0 chr6 69152175 69152287 -80364750 + Lx8 LINE L1 6332 6443 -1030 1 1112 660 335 77 69 chr6 69152445 69152952 -80364085 + Lx8 LINE L1 6834 7344 -129 1 1112 468 123 0 0 chr6 69154384 69154457 -80362580 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1112 180 0 0 0 chr6 69154457 69154476 -80362561 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 1112 1059 287 101 6 chr6 69154499 69154846 -80362191 + Lx6 LINE L1 6870 7249 -211 1 1112 465 323 36 48 chr6 69155143 69155309 -80361728 - B3 SINE B2 -5 211 48 1 1112 7124 48 1 0 chr6 69155396 69156290 -80360747 + L1_Mm LINE L1 4109 5003 -880 1 1112 2625 61 12 3 chr6 69156290 69156634 -80360403 + L1Md_F3 LINE L1 6237 6583 -1 1 1112 7274 71 9 5 chr6 69156699 69157920 -80359117 - L1Md_F2 LINE L1 -2 6580 5353 1 1112 5615 93 5 2 chr6 69157920 69158715 -80358322 + L1_Mm LINE L1 4380 5176 -707 2 1112 437 0 19 0 chr6 69158823 69158876 -80358161 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 2 1112 452 279 8 16 chr6 69158953 69159077 -80357960 + B3 SINE B2 94 216 0 2 1112 21 0 0 0 chr6 69159084 69159105 -80357932 + AT_rich Low_complexity Low_complexity 1 21 0 2 1112 23 54 0 0 chr6 69159177 69159214 -80357823 + AT_rich Low_complexity Low_complexity 1 37 0 2 1112 687 75 0 0 chr6 69159240 69159334 -80357703 + (TC)n Simple_repeat Simple_repeat 1 94 0 2 1112 189 0 0 0 chr6 69159334 69159355 -80357682 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1112 624 59 0 0 chr6 69160102 69160187 -80356850 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 1112 681 313 30 22 chr6 69160196 69160467 -80356570 - Lx4B LINE L1 -17 7041 6769 2 1112 919 221 8 107 chr6 69160542 69160792 -80356245 + L1_Mur2 LINE L1 1303 1515 -4362 2 1112 1222 73 0 17 chr6 69160792 69160973 -80356064 + (GAA)n Simple_repeat Simple_repeat 3 180 0 2 1112 919 221 8 107 chr6 69160973 69161077 -80355960 + L1_Mur2 LINE L1 1516 1622 -4255 2 1112 5233 203 13 42 chr6 69161071 69161984 -80355053 + L1_Mur2 LINE L1 4342 5250 -627 2 1112 1027 130 0 0 chr6 69161984 69162130 -80354907 + B1_Mus2 SINE Alu 2 147 0 2 1112 5233 203 13 42 chr6 69162130 69162417 -80354620 + L1_Mur2 LINE L1 5251 5508 -369 2 1112 8698 182 6 15 chr6 69162397 69164151 -80352886 + L1_Mm LINE L1 3748 5484 -399 2 1112 1218 174 4 20 chr6 69164151 69164398 -80352639 + Lx LINE L1 6405 6647 -7 2 1112 748 316 4 57 chr6 69164717 69164911 -80352126 - B3 SINE B2 0 216 34 2 1112 604 86 0 19 chr6 69164911 69165018 -80352019 + L1_Mus4 LINE L1 6524 6628 -8 2 1112 748 316 4 57 chr6 69165018 69165051 -80351986 - B3 SINE B2 -183 33 1 2 1112 785 293 40 113 chr6 69166780 69167007 -80350030 - MTEb LTR MaLR -8 371 166 2 1112 1134 71 0 0 chr6 69167007 69167177 -80349860 + (TC)n Simple_repeat Simple_repeat 2 171 0 2 1112 785 293 40 113 chr6 69167177 69167295 -80349742 - MTEb LTR MaLR -214 165 51 2 1112 7361 85 23 10 chr6 69167316 69169028 -80348009 - L1Md_F2 LINE L1 -12 6570 4838 2 1112 985 98 27 20 chr6 69169149 69169295 -80347742 + B1_Mus1 SINE Alu 2 148 0 2 1112 1036 93 7 0 chr6 69169533 69169673 -80347364 + B1_Mus2 SINE Alu 2 142 -5 2 1112 240 35 0 0 chr6 69170144 69170173 -80346864 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 2 1112 323 250 20 30 chr6 69170173 69170263 -80346774 - Lx4B LINE L1 -10 7048 6958 2 1112 2483 201 8 4 chr6 69170332 69170801 -80346236 - Lx4B LINE L1 -314 6744 6274 2 1112 632 199 8 0 chr6 69171731 69171862 -80345175 + Lx4B LINE L1 5809 5940 -1118 2 1112 2629 177 0 9 chr6 69171842 69172282 -80344755 + Lx2 LINE L1 6446 6881 -116 2 1112 2344 243 55 13 chr6 69172273 69172907 -80344130 + Lx2B LINE L1 6315 6975 -25 2 1112 384 252 18 45 chr6 69172907 69173019 -80344018 + ORR1C2 LTR MaLR 274 382 -2 2 1112 330 345 139 22 chr6 69174088 69174455 -80342582 - MLT1D LTR MaLR -24 481 72 2 1112 921 255 97 36 chr6 69175322 69175631 -80341406 - ORR1C1 LTR MaLR -50 328 1 2 1112 42 71 0 0 chr6 69176046 69176130 -80340907 + AT_rich Low_complexity Low_complexity 1 84 0 2 1112 207 69 0 0 chr6 69176185 69176214 -80340823 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 2 1112 21 57 0 0 chr6 69177831 69177866 -80339171 + AT_rich Low_complexity Low_complexity 1 35 0 2 1112 3080 39 5 40 chr6 69178117 69178521 -80338516 - RLTR10 LTR ERVK 0 390 1 2 1112 281 180 77 0 chr6 69178631 69178715 -80338322 - L1_Mur1 LINE L1 -565 5619 5507 2 1112 1974 218 53 8 chr6 69178710 69179200 -80337837 + L1_Mm LINE L1 4984 5495 -388 2 1112 435 130 0 0 chr6 69179269 69179338 -80337699 - L1_Mm LINE L1 -658 5225 5157 2 1112 3273 98 7 0 chr6 69179339 69179797 -80337240 + L1_Mus1 LINE L1 6102 6562 -5 2 1112 180 0 0 0 chr6 69179810 69179830 -80337207 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1112 533 256 20 77 chr6 69180883 69181078 -80335959 + Lx9 LINE L1 6993 7176 -468 2 1112 1923 150 16 0 chr6 69181080 69181394 -80335643 + ORR1A2 LTR MaLR 1 319 -8 2 1112 426 267 48 54 chr6 69181398 69181584 -80335453 + Lx9 LINE L1 7174 7358 -286 2 1112 443 286 0 0 chr6 69181812 69181924 -80335113 + Lx8 LINE L1 6332 6443 -1030 2 1112 678 302 99 7 chr6 69182081 69182374 -80334663 + Lx8 LINE L1 6834 7153 -320 2 1112 423 0 0 0 chr6 69184050 69184097 -80332940 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1112 303 28 0 0 chr6 69184097 69184132 -80332905 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1112 710 298 69 133 chr6 69184155 69184561 -80332476 + Lx6 LINE L1 6870 7249 -211 2 1112 430 319 41 48 chr6 69184857 69185002 -80332035 - B3 SINE B2 -5 211 68 2 1112 235 227 21 0 chr6 69186910 69187007 -80330030 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1112 1004 130 0 0 chr6 69187919 69188065 -80328972 - B1_Mus2 SINE Alu 0 147 2 2 1112 241 340 155 28 chr6 69190068 69190358 -80326679 - MLT1D LTR MaLR -107 398 72 2 1112 1124 250 89 32 chr6 69191576 69191923 -80325114 - ORR1C1 LTR MaLR -11 367 1 2 1112 261 75 0 0 chr6 69192482 69192522 -80324515 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 2 1112 21 57 0 0 chr6 69194136 69194171 -80322866 + AT_rich Low_complexity Low_complexity 1 35 0 2 1112 285 157 2 0 chr6 69194570 69194636 -80322401 - L1_Mm LINE L1 -319 5561 5494 2 1112 1211 230 0 3 chr6 69194631 69194915 -80322122 + L1_Mur1 LINE L1 4987 5269 -617 2 1112 33401 63 2 18 chr6 69194896 69200260 -80316777 + L1Md_F LINE L1 100 5372 -511 2 1112 434 95 0 0 chr6 69200281 69200344 -80316693 - L1_Mm LINE L1 -664 5219 5157 2 1112 3299 96 9 0 chr6 69200345 69200803 -80316234 + L1_Mus1 LINE L1 6102 6563 -4 2 1112 301 377 30 30 chr6 69201244 69201411 -80315626 - Tigger5 DNA MER2_type -2202 204 38 2 1112 500 231 21 99 chr6 69201882 69202016 -80315021 + Lx9 LINE L1 6993 7112 -532 2 1112 3725 72 93 2 chr6 69202016 69202533 -80314504 - LTRIS2 LTR ERV1 0 564 1 2 1112 500 231 21 99 chr6 69202533 69202590 -80314447 + Lx9 LINE L1 7113 7169 -475 2 1112 1852 166 16 0 chr6 69202599 69202913 -80314124 + ORR1A2 LTR MaLR 1 319 -8 2 1112 285 266 44 141 chr6 69202916 69203122 -80313915 + Lx9 LINE L1 7173 7358 -286 2 1112 273 339 0 0 chr6 69203349 69203461 -80313576 + Lx8 LINE L1 6332 6443 -1030 2 1112 824 299 73 10 chr6 69203619 69203920 -80313117 + Lx8 LINE L1 6834 7153 -320 2 1112 2695 204 86 28 chr6 69204295 69205246 -80311791 - RLTR13D1 LTR ERVK -21 1002 1 2 17 2067 45 0 0 chr6 69205924 69206170 -80310867 - L1_Mm LINE L1 -129 5754 5509 2 1113 1673 32 96 5 chr6 69206170 69206390 -80310647 + L1Md_F3 LINE L1 6343 6582 -2 2 1113 2153 12 0 0 chr6 69206912 69207154 -80309883 + L1Md_T LINE L1 5345 5586 -297 2 1113 8650 22 0 0 chr6 69207154 69208150 -80308887 + L1Md_T LINE L1 5587 6582 0 2 1113 441 0 0 0 chr6 69208313 69208362 -80308675 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1113 342 0 0 0 chr6 69208362 69208399 -80308638 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1113 924 298 117 6 chr6 69208445 69208762 -80308275 + Lx6 LINE L1 6898 7249 -211 2 1113 466 329 37 37 chr6 69209060 69209221 -80307816 - B3 SINE B2 -5 211 51 2 1113 203 228 17 17 chr6 69210816 69210874 -80306163 + (TATG)n Simple_repeat Simple_repeat 2 59 0 2 1113 250 26 51 0 chr6 69210884 69210923 -80306114 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1113 7065 39 0 0 chr6 69211695 69212542 -80304495 + L1Md_A LINE L1 5734 6580 -2 2 1113 270 194 0 0 chr6 69212613 69212675 -80304362 + T-rich Low_complexity Low_complexity 1 62 0 2 1113 1112 96 0 0 chr6 69212675 69212821 -80304216 - B1_Mus2 SINE Alu 0 147 2 2 1113 363 290 191 45 chr6 69214825 69215161 -80301876 - MLT1D LTR MaLR -107 398 14 2 1113 1131 257 81 23 chr6 69216327 69216674 -80300363 - ORR1C1 LTR MaLR -11 367 1 2 1113 34 55 0 0 chr6 69217064 69217119 -80299918 + AT_rich Low_complexity Low_complexity 1 55 0 2 1113 231 61 0 0 chr6 69217216 69217249 -80299788 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 2 1113 21 57 0 0 chr6 69218860 69218895 -80298142 + AT_rich Low_complexity Low_complexity 1 35 0 2 1113 343 199 24 0 chr6 69219248 69219337 -80297700 - L1_Mur1 LINE L1 -565 5619 5507 2 1113 2075 211 47 8 chr6 69219330 69219823 -80297214 + L1_Mm LINE L1 4984 5495 -388 2 1113 462 116 0 0 chr6 69219892 69219961 -80297076 - L1_Mm LINE L1 -658 5225 5157 2 1113 3151 113 7 0 chr6 69219962 69220420 -80296617 + L1_Mus1 LINE L1 6102 6562 -5 2 1113 312 377 30 30 chr6 69220864 69221031 -80296006 - Tigger5 DNA MER2_type -2202 204 38 2 1113 487 279 16 72 chr6 69221499 69221692 -80295345 + Lx9 LINE L1 6993 7174 -470 2 1113 1968 147 16 0 chr6 69221696 69222010 -80295027 + ORR1A2 LTR MaLR 1 319 -8 2 1113 372 282 48 53 chr6 69222013 69222200 -80294837 + Lx9 LINE L1 7173 7358 -286 2 1113 410 286 0 0 chr6 69222428 69222540 -80294497 + Lx8 LINE L1 6332 6443 -1030 2 1113 649 304 103 7 chr6 69222697 69222989 -80294048 + Lx8 LINE L1 6834 7153 -320 2 1113 504 0 0 0 chr6 69224696 69224752 -80292285 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1113 699 301 69 133 chr6 69224775 69225181 -80291856 + Lx6 LINE L1 6870 7249 -211 2 1113 438 312 41 48 chr6 69225477 69225622 -80291415 - B3 SINE B2 -5 211 68 2 1113 300 200 30 0 chr6 69227514 69227614 -80289423 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 1113 469 44 29 0 chr6 69228513 69228581 -80288456 + (TTTTC)n Simple_repeat Simple_repeat 2 71 0 2 1113 1087 89 0 0 chr6 69228583 69228729 -80288308 - B1_Mus2 SINE Alu 0 147 2 2 1113 328 296 191 45 chr6 69230731 69231067 -80285970 - MLT1D LTR MaLR -107 398 14 2 1113 1131 257 81 23 chr6 69232233 69232580 -80284457 - ORR1C1 LTR MaLR -11 367 1 2 1113 37 76 0 0 chr6 69232970 69233049 -80283988 + AT_rich Low_complexity Low_complexity 1 79 0 2 1113 231 61 0 0 chr6 69233122 69233155 -80283882 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 2 1113 21 57 0 0 chr6 69234767 69234802 -80282235 + AT_rich Low_complexity Low_complexity 1 35 0 2 1113 343 157 7 0 chr6 69235179 69235244 -80281793 - L1_Mur1 LINE L1 -648 5594 5507 2 1113 1995 219 47 2 chr6 69235239 69235724 -80281313 + L1_Mm LINE L1 4984 5490 -393 2 1113 394 159 0 0 chr6 69235798 69235867 -80281170 - L1_Mm LINE L1 -658 5225 5157 3 1113 3126 116 4 4 chr6 69235868 69236329 -80280708 + L1_Mus1 LINE L1 6102 6562 -5 3 1113 207 0 0 0 chr6 69236344 69236367 -80280670 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1113 511 254 15 99 chr6 69237417 69237618 -80279419 + Lx9 LINE L1 6993 7176 -468 3 1113 1822 149 32 3 chr6 69237620 69237930 -80279107 + ORR1A2 LTR MaLR 1 319 -8 3 1113 389 277 48 53 chr6 69237933 69238120 -80278917 + Lx9 LINE L1 7173 7358 -286 3 1113 392 261 9 9 chr6 69238348 69238460 -80278577 + Lx8 LINE L1 6332 6443 -1030 3 1113 699 333 80 54 chr6 69238617 69239115 -80277922 + Lx8 LINE L1 6834 7344 -129 3 1113 377 20 20 0 chr6 69241317 69241367 -80275670 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1113 195 100 0 0 chr6 69242253 69242283 -80274754 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 3 1113 1020 123 0 0 chr6 69242283 69242429 -80274608 - B1_Mus2 SINE Alu 0 147 2 3 1113 2267 56 6 53 chr6 69243206 69243544 -80273493 + RLTRETN_Mm LTR ERVK 1 322 0 3 1113 18928 50 3 16 chr6 69243544 69245622 -80271415 + MMETn-int LTR ERVK 1 2064 -2780 3 1113 7886 48 1 0 chr6 69245622 69246566 -80270471 + L1Md_F2 LINE L1 5616 6559 -23 3 1113 389 20 20 0 chr6 69246566 69246616 -80270421 + (TAA)n Simple_repeat Simple_repeat 1 51 0 3 1113 7886 48 1 0 chr6 69246616 69246637 -80270400 + L1Md_F2 LINE L1 6560 6581 -1 3 1113 18928 50 3 16 chr6 69246637 69246994 -80270043 + MMETn-int LTR ERVK 2065 2405 -2439 3 1113 6163 35 0 0 chr6 69246994 69247744 -80269293 + L1_Mm LINE L1 2050 2799 -3084 3 1113 17403 81 12 12 chr6 69247744 69250160 -80266877 + MMETn-int LTR ERVK 2409 4824 -20 3 1113 198 0 0 0 chr6 69250160 69250182 -80266855 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 3 1113 2295 69 6 50 chr6 69250196 69250533 -80266504 + RLTRETN_Mm LTR ERVK 1 322 0 3 1113 252 358 138 11 chr6 69251765 69252025 -80265012 - MLT1D LTR MaLR -107 398 106 3 1113 213 193 0 34 chr6 69252433 69252492 -80264545 + A-rich Low_complexity Low_complexity 2 58 0 3 1113 1105 252 87 29 chr6 69253269 69253616 -80263421 - ORR1C1 LTR MaLR -11 367 1 3 1113 28 48 0 0 chr6 69254032 69254074 -80262963 + AT_rich Low_complexity Low_complexity 1 42 0 3 1113 21 36 0 0 chr6 69255642 69255670 -80261367 + AT_rich Low_complexity Low_complexity 1 28 0 3 1113 21 57 0 0 chr6 69255810 69255845 -80261192 + AT_rich Low_complexity Low_complexity 1 35 0 3 1113 355 157 7 0 chr6 69256222 69256287 -80260750 - L1_Mur1 LINE L1 -648 5594 5507 3 1113 2199 209 38 4 chr6 69256282 69256777 -80260260 + L1_Mm LINE L1 4984 5495 -388 3 1113 377 127 0 0 chr6 69256852 69256915 -80260122 - L1_Mm LINE L1 -664 5219 5157 3 1113 3232 90 15 2 chr6 69256916 69257371 -80259666 + L1_Mus1 LINE L1 6102 6562 -5 3 1113 434 342 29 19 chr6 69258373 69258579 -80258458 + Lx8 LINE L1 6198 6405 -1068 3 1113 2392 139 10 8 chr6 69258884 69259282 -80257755 + L1_Mus4 LINE L1 6231 6629 -7 3 1113 441 167 19 68 chr6 69259340 69259443 -80257594 + URR1B DNA MER1_type 127 224 -1 3 1113 635 284 16 38 chr6 69259581 69259764 -80257273 - B3 SINE B2 -2 214 36 3 1113 534 16 0 0 chr6 69260098 69260161 -80256876 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1113 527 322 18 63 chr6 69260189 69260411 -80256626 - B3 SINE B2 -4 212 1 3 1113 2725 133 18 2 chr6 69260632 69261070 -80255967 - L1_Mus3 LINE L1 -45 6593 6149 3 1113 1606 74 14 0 chr6 69261069 69261286 -80255751 + L1_Mus3 LINE L1 5910 6129 -509 3 1113 2711 249 35 13 chr6 69261307 69262069 -80254968 - MurERV4-int LTR ERVK -1757 3503 2725 3 1113 1243 139 9 14 chr6 69262083 69262295 -80254742 + L1_Mus3 LINE L1 6374 6584 -54 3 1113 189 0 0 0 chr6 69262541 69262562 -80254475 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1113 1230 161 107 53 chr6 69262597 69262860 -80254177 + ORR1A4 LTR MaLR 1 277 -52 3 1113 29 70 0 0 chr6 69262902 69262959 -80254078 + AT_rich Low_complexity Low_complexity 1 57 0 3 1113 735 288 100 36 chr6 69262959 69263577 -80253460 - MurERV4-int LTR ERVK -2565 2695 1528 3 1113 645 49 0 0 chr6 69263687 69263768 -80253269 + (TC)n Simple_repeat Simple_repeat 1 81 0 3 1113 234 0 0 0 chr6 69263768 69263793 -80253244 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1113 285 106 0 41 chr6 69263828 69263877 -80253160 + ORR1D1 LTR MaLR 1 47 -282 3 1113 24964 140 10 6 chr6 69263911 69265926 -80251111 - L1_Mus3 LINE L1 -5 6633 4601 3 1113 6750 39 5 8 chr6 69265926 69266183 -80250854 - L1Md_F2 LINE L1 0 6582 6329 3 1113 1936 119 9 51 chr6 69266183 69266519 -80250518 + RLTRETN_Mm LTR ERVK 1 322 0 3 1113 6750 39 5 8 chr6 69266519 69267093 -80249944 - L1Md_F2 LINE L1 -254 6328 5754 3 1113 24964 165 9 8 chr6 69267093 69268377 -80248660 - L1_Mus3 LINE L1 -1283 4600 3324 3 1113 2998 120 68 10 chr6 69268377 69268875 -80248162 - L1_Mus2 LINE L1 -3 6563 6037 3 1113 24964 165 9 8 chr6 69268875 69268936 -80248101 - L1_Mus3 LINE L1 -2560 3323 3278 3 1113 459 0 0 0 chr6 69268936 69268987 -80248050 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1113 24964 180 19 24 chr6 69268987 69271757 -80245280 - L1_Mus3 LINE L1 -2606 3277 509 3 1113 849 97 0 63 chr6 69271817 69271960 -80245077 - L1_Mus2 LINE L1 -2 6564 6431 3 1113 999 123 0 31 chr6 69271962 69272122 -80244915 + L1_Mus1 LINE L1 5955 6109 -458 3 1113 1914 253 54 10 chr6 69272123 69272626 -80244411 + RMER17B LTR ERVK 429 953 -5 3 1113 559 246 48 149 chr6 69272817 69272977 -80244060 + ORR1D1 LTR MaLR 152 309 -65 3 1113 296 48 24 0 chr6 69272977 69273019 -80244018 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1113 559 246 48 149 chr6 69273019 69273106 -80243931 + ORR1D1 LTR MaLR 310 374 0 3 1113 488 344 57 31 chr6 69273385 69273613 -80243424 + RLTR18 LTR ERVK 383 616 0 3 1113 307 377 28 0 chr6 69273644 69273750 -80243287 - B3 SINE B2 -102 114 6 3 1113 334 225 36 20 chr6 69274884 69275004 -80242033 - PB1D9 SINE Alu -26 123 1 3 1113 207 0 0 0 chr6 69275101 69275124 -80241913 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1113 2403 90 0 3 chr6 69275213 69275546 -80241491 + IAPEY3_LTR LTR ERVK 1 332 0 3 1113 4054 165 25 49 chr6 69275546 69276462 -80240575 + IAPEY3-int LTR ERVK 1 952 -6629 3 1113 1475 197 88 33 chr6 69276584 69276947 -80240090 + RMER16-int LTR ERVK 255 637 -4769 3 1113 369 129 0 31 chr6 69276936 69277000 -80240037 + MMVL30-int LTR ERV1 1283 1344 -2354 3 1113 318 81 86 86 chr6 69277166 69277247 -80239790 + IAPEY3-int LTR ERVK 4590 4670 -2911 3 1113 3819 174 15 16 chr6 69277422 69277595 -80239442 - L1_Mm LINE L1 -191 5692 5520 3 1113 3471 30 0 128 chr6 69277595 69278095 -80238942 - RLTR10C LTR ERVK 0 436 1 3 1113 15907 165 50 21 chr6 69278095 69281231 -80235806 - L1_Mm LINE L1 -364 5519 2286 3 1113 2461 206 51 72 chr6 69281216 69282227 -80234810 - L1VL4 LINE L1 -2427 1132 154 3 1113 781 109 101 0 chr6 69282287 69282425 -80234612 - L1_Mus1 LINE L1 -1 6566 6415 3 1113 1035 111 0 0 chr6 69282425 69282569 -80234468 + L1_Mus1 LINE L1 5966 6109 -458 3 1113 2024 241 66 4 chr6 69282570 69283069 -80233968 + RMER17B LTR ERVK 429 958 0 3 1113 353 238 22 162 chr6 69283259 69283516 -80233521 + ORR1D1 LTR MaLR 156 364 -14 3 1113 477 348 57 31 chr6 69283800 69284028 -80233009 + RLTR18 LTR ERVK 383 616 0 3 1113 307 377 28 0 chr6 69284059 69284165 -80232872 - B3 SINE B2 -102 114 6 3 1113 324 0 0 0 chr6 69284228 69284264 -80232773 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1113 183 42 0 0 chr6 69285394 69285418 -80231619 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1113 1125 85 0 0 chr6 69285419 69285560 -80231477 - B1_Mus2 SINE Alu -6 141 1 3 1113 198 0 0 0 chr6 69285658 69285680 -80231357 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 3 1113 838 328 72 17 chr6 69285744 69285830 -80231207 - Lx9 LINE L1 -58 7586 7489 3 1113 300 27 0 0 chr6 69285830 69285867 -80231170 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1113 838 328 72 17 chr6 69285867 69286252 -80230785 - Lx9 LINE L1 -156 7488 7090 3 1113 243 326 87 0 chr6 69287463 69287601 -80229436 - MER70B LTR ERVL -401 177 28 3 1113 372 97 0 0 chr6 69288392 69288454 -80228583 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 3 1113 549 304 92 75 chr6 69288716 69289011 -80228026 + RLTR11A LTR ERVK 19 322 -255 3 1113 7013 150 32 9 chr6 69289024 69291057 -80225980 + Lx3A LINE L1 4901 6975 -6 3 1113 919 137 6 6 chr6 69291122 69291298 -80225739 + (GGAA)n Simple_repeat Simple_repeat 2 177 0 3 1113 769 316 71 69 chr6 69291486 69291962 -80225075 + RLTR17 LTR ERVK 105 581 -111 3 1113 357 267 58 44 chr6 69292209 69292346 -80224691 - Lx9 LINE L1 -324 7320 7182 3 1113 3684 74 39 0 chr6 69293018 69293502 -80223535 - RLTR1C LTR ERV1 0 503 1 3 1113 705 268 32 41 chr6 69294963 69295181 -80221856 - B3 SINE B2 0 216 1 3 1113 192 97 0 0 chr6 69295637 69295668 -80221369 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1113 249 339 113 24 chr6 69296032 69296156 -80220881 - Tigger5 DNA MER2_type -2199 207 73 3 1113 665 265 89 29 chr6 69296724 69297004 -80220033 + Lx9 LINE L1 7115 7411 -233 3 1113 722 328 134 34 chr6 69297147 69297712 -80219325 + Lx8 LINE L1 6834 7455 -18 3 1113 317 22 44 0 chr6 69297865 69297910 -80219127 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1113 287 250 0 59 chr6 69298781 69298866 -80218171 + RLTR14 LTR ERV1 2 81 -301 3 1113 548 14 14 0 chr6 69299077 69299146 -80217891 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 3 1113 429 311 8 8 chr6 69299225 69299348 -80217689 + B3 SINE B2 94 216 0 3 1113 21 0 0 0 chr6 69299355 69299376 -80217661 + AT_rich Low_complexity Low_complexity 1 21 0 3 1113 402 21 0 0 chr6 69299463 69299510 -80217527 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1113 198 0 0 0 chr6 69299510 69299531 -80217506 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1113 207 179 42 56 chr6 69300040 69300111 -80216926 + A-rich Low_complexity Low_complexity 3 72 0 3 1113 221 157 39 19 chr6 69300048 69300100 -80216937 + (CAAAG)n Simple_repeat Simple_repeat 2 54 0 3 1113 528 45 0 0 chr6 69300280 69300347 -80216690 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 3 1113 634 328 30 22 chr6 69300349 69300620 -80216417 - Lx4B LINE L1 -17 7041 6769 3 1113 955 218 75 23 chr6 69300694 69300894 -80216143 + L1_Mur2 LINE L1 1302 1513 -4364 3 1113 729 34 0 0 chr6 69300894 69300982 -80216055 + (GAA)n Simple_repeat Simple_repeat 3 90 0 3 1113 955 218 75 23 chr6 69300982 69301086 -80215951 + L1_Mur2 LINE L1 1514 1621 -4256 3 1113 5274 198 15 37 chr6 69301080 69302014 -80215023 + L1_Mur2 LINE L1 4342 5254 -623 3 1113 991 132 0 0 chr6 69302014 69302158 -80214879 + B1_Mus2 SINE Alu 2 145 -2 3 1113 249 57 0 0 chr6 69302158 69302193 -80214844 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1113 5274 198 15 37 chr6 69302193 69302450 -80214587 + L1_Mur2 LINE L1 5255 5507 -370 3 1113 7646 182 40 32 chr6 69302430 69304153 -80212884 + L1_Mur2 LINE L1 3743 5478 -399 3 1113 1313 164 0 20 chr6 69304153 69304402 -80212635 + Lx LINE L1 6405 6648 -6 3 1113 833 292 0 53 chr6 69304743 69304937 -80212100 - B3 SINE B2 0 216 31 3 1113 555 143 0 9 chr6 69304937 69305043 -80211994 + L1_Mus4 LINE L1 6524 6628 -8 4 1113 833 292 0 53 chr6 69305043 69305076 -80211961 - B3 SINE B2 -186 30 1 3 1113 1452 131 52 67 chr6 69305481 69305808 -80211229 - RLTRETN_Mm LTR ERVK 0 322 1 4 1113 16024 137 22 33 chr6 69305808 69308841 -80208196 - ETnERV2-int LTR ERVK -107 7299 3219 4 1113 421 50 0 0 chr6 69308841 69308901 -80208136 - RLTRETN_Mm LTR ERVK -262 60 1 4 1113 733 272 56 112 chr6 69309475 69309696 -80207341 - MTEb LTR MaLR -8 371 166 4 1113 450 0 0 0 chr6 69309696 69309746 -80207291 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1113 733 272 56 112 chr6 69309746 69309864 -80207173 - MTEb LTR MaLR -214 165 51 4 1113 4362 80 12 7 chr6 69309885 69310476 -80206561 - L1Md_F2 LINE L1 -12 6570 5977 4 1113 377 122 14 0 chr6 69310748 69310822 -80206215 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1113 450 282 99 6 chr6 69310871 69311053 -80205984 - B3 SINE B2 -17 199 1 4 1113 285 145 0 0 chr6 69311547 69311609 -80205428 + (T)n Simple_repeat Simple_repeat 1 62 0 4 1113 5056 103 4 19 chr6 69311619 69312371 -80204666 - L1_Mus2 LINE L1 -2 6564 5824 4 1113 2147 78 0 0 chr6 69312373 69312654 -80204383 + L1_Mus2 LINE L1 5589 5869 -697 4 1113 2890 26 6 11 chr6 69313488 69313836 -80203201 + ORR1A0 LTR MaLR 1 346 0 4 1113 13569 66 7 1 chr6 69313837 69315616 -80201421 + ORR1A0-int LTR MaLR 2 1792 0 4 1113 2896 32 6 3 chr6 69315616 69315961 -80201076 + ORR1A0 LTR MaLR 1 346 0 4 1113 4090 154 43 13 chr6 69316036 69316801 -80200236 - Lx LINE L1 -7 6647 5860 4 1113 640 209 3 0 chr6 69316802 69316952 -80200085 - Lx3_Mus LINE L1 -558 6451 6281 4 1113 7048 71 3 2 chr6 69316979 69317907 -80199130 - L1Md_F2 LINE L1 -12 6570 5642 4 1113 37048 48 1 5 chr6 69317909 69323869 -80193168 - L1Md_T LINE L1 0 6582 643 4 1113 367 347 130 17 chr6 69324846 69325192 -80191845 - MLT1D LTR MaLR -15 490 106 4 1113 1212 255 90 3 chr6 69326394 69326740 -80190297 - ORR1C1 LTR MaLR -2 376 1 4 1113 23 68 0 0 chr6 69327109 69327153 -80189884 + AT_rich Low_complexity Low_complexity 1 44 0 4 1113 316 130 29 0 chr6 69327242 69327311 -80189726 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 4 1113 334 182 18 0 chr6 69329326 69329412 -80187625 - L1_Mur2 LINE L1 -559 5619 5498 4 1113 2366 212 6 6 chr6 69329409 69329921 -80187116 + L1_Mur2 LINE L1 4984 5495 -388 4 1113 340 147 15 0 chr6 69329990 69330058 -80186979 - L1_Mm LINE L1 -658 5225 5157 4 1113 3252 103 11 0 chr6 69330059 69330516 -80186521 + L1_Mus1 LINE L1 6102 6563 -4 4 1113 358 105 11 0 chr6 69330569 69330630 -80186407 + L1Md_A LINE L1 5544 5616 -675 4 1113 8355 35 0 0 chr6 69330630 69331624 -80185413 + L1Md_A LINE L1 5588 6581 -1 4 1113 634 319 36 5 chr6 69331739 69331934 -80185103 + B3 SINE B2 2 202 -14 4 1113 185 178 22 0 chr6 69332058 69332103 -80184934 + GA-rich Low_complexity Low_complexity 3 48 0 4 1113 180 0 0 0 chr6 69332101 69332121 -80184916 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 4 1113 180 0 0 0 chr6 69332493 69332513 -80184524 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1113 265 377 0 13 chr6 69332894 69332972 -80184065 - Tigger5 DNA MER2_type -2202 204 128 4 1113 256 244 8 105 chr6 69333534 69333667 -80183370 + Lx9 LINE L1 6993 7112 -532 4 1113 3617 60 91 19 chr6 69333668 69333945 -80183092 - LTRIS2 LTR ERV1 0 564 291 4 1113 2699 65 50 39 chr6 69333945 69334329 -80182708 - RLTR10 LTR ERVK -2 388 1 4 1113 3617 60 91 19 chr6 69334329 69334577 -80182460 - LTRIS2 LTR ERV1 -274 290 1 4 1113 933 218 40 13 chr6 69334578 69334806 -80182231 - RLTR1B-int LTR ERV1 -42 5021 4788 4 139 7667 150 46 21 chr6 69334797 69338001 -80179036 - RLTR1B-int LTR ERV1 -792 4271 760 4 1114 4375 146 16 16 chr6 69337992 69338729 -80178308 - RMER16-int LTR ERVK -3962 1444 708 4 1114 382 282 39 26 chr6 69338733 69338886 -80178151 - RLTR1B-int LTR ERV1 -7020 536 382 4 1114 3687 78 93 0 chr6 69339359 69339875 -80177162 - LTRIS2 LTR ERV1 0 564 1 4 1114 2045 127 16 0 chr6 69339941 69340255 -80176782 + ORR1A2 LTR MaLR 1 319 -8 4 1114 372 274 38 38 chr6 69340258 69340444 -80176593 + Lx9 LINE L1 7173 7358 -286 4 1114 319 321 0 0 chr6 69340667 69340779 -80176258 + Lx8 LINE L1 6332 6443 -1030 4 1114 655 307 75 17 chr6 69340947 69341239 -80175798 + Lx8 LINE L1 6845 7153 -320 4 1114 21 36 0 0 chr6 69341555 69341583 -80175454 + AT_rich Low_complexity Low_complexity 1 28 0 4 1114 219 211 33 0 chr6 69343596 69343686 -80173351 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 1114 225 196 0 0 chr6 69344566 69344617 -80172420 + T-rich Low_complexity Low_complexity 1 51 0 4 1114 649 128 248 0 chr6 69344617 69344734 -80172303 - B1_Mm SINE Alu 0 147 2 4 1114 267 339 150 23 chr6 69346741 69347001 -80170036 - MLT1D LTR MaLR -107 398 106 4 1114 1159 251 81 23 chr6 69348234 69348581 -80168456 - ORR1C1 LTR MaLR -11 367 1 4 1114 207 98 0 68 chr6 69348988 69349032 -80168005 + (TTAAA)n Simple_repeat Simple_repeat 5 45 0 4 1114 207 88 0 0 chr6 69349140 69349174 -80167863 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 4 1114 28 29 0 0 chr6 69350793 69350828 -80166209 + AT_rich Low_complexity Low_complexity 1 35 0 4 1114 2079 221 9 0 chr6 69351017 69351474 -80165563 + L1_Mm LINE L1 5035 5495 -388 4 1114 494 72 0 0 chr6 69351543 69351612 -80165425 - L1_Mm LINE L1 -658 5225 5157 4 1114 3401 85 2 9 chr6 69351613 69352078 -80164959 + L1_Mus1 LINE L1 6102 6563 -4 4 1114 310 377 30 30 chr6 69352517 69352684 -80164353 - Tigger5 DNA MER2_type -2202 204 38 4 1114 631 254 40 136 chr6 69353150 69353277 -80163760 + Lx9 LINE L1 7000 7112 -532 4 1114 3591 85 91 2 chr6 69353277 69353795 -80163242 - LTRIS2 LTR ERV1 0 564 1 4 1114 631 254 40 136 chr6 69353795 69353861 -80163176 + Lx9 LINE L1 7113 7176 -468 4 1114 2004 137 16 0 chr6 69353861 69354182 -80162855 + ORR1A2 LTR MaLR 1 326 -1 4 1114 631 254 40 136 chr6 69354182 69354384 -80162653 + Lx9 LINE L1 7177 7358 -286 4 1114 263 333 9 0 chr6 69354611 69354722 -80162315 + Lx8 LINE L1 6332 6443 -1030 4 1114 682 319 73 10 chr6 69354880 69355181 -80161856 + Lx8 LINE L1 6834 7153 -320 4 1114 2718 194 94 35 chr6 69355556 69356507 -80160530 - RLTR13D1 LTR ERVK -21 1002 1 4 1114 297 0 0 0 chr6 69357828 69357861 -80159176 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1114 531 0 0 0 chr6 69357870 69357929 -80159108 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1114 841 297 72 7 chr6 69357964 69358296 -80158741 + Lx6 LINE L1 6881 7511 -185 4 1114 348 328 40 93 chr6 69358594 69358745 -80158292 - B3 SINE B2 -5 211 69 4 1114 473 192 8 0 chr6 69360661 69360781 -80156256 + (TG)n Simple_repeat Simple_repeat 2 122 0 4 1114 1055 116 0 0 chr6 69361697 69361843 -80155194 - B1_Mus2 SINE Alu 0 147 2 4 1114 227 360 141 14 chr6 69363838 69364128 -80152909 - MLT1D LTR MaLR -107 398 72 4 1114 1175 234 96 29 chr6 69365322 69365666 -80151371 - ORR1C1 LTR MaLR -11 367 1 4 1114 33 73 0 0 chr6 69366053 69366121 -80150916 + AT_rich Low_complexity Low_complexity 1 68 0 4 1114 198 91 0 0 chr6 69366219 69366252 -80150785 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 4 1114 22 56 0 0 chr6 69367874 69367910 -80149127 + AT_rich Low_complexity Low_complexity 1 36 0 4 1114 37120 22 2 7 chr6 69368108 69373310 -80143727 + L1Md_A LINE L1 416 5586 -297 4 1114 8281 37 1 2 chr6 69373310 69374307 -80142730 + L1Md_A LINE L1 5587 6582 0 4 1114 322 206 20 0 chr6 69374481 69374569 -80142468 - L1_Mur1 LINE L1 -565 5619 5507 4 1114 2171 204 42 8 chr6 69374564 69375059 -80141978 + L1_Mm LINE L1 4984 5495 -388 4 1114 434 95 0 0 chr6 69375134 69375197 -80141840 - L1_Mm LINE L1 -664 5219 5157 4 1114 3016 104 26 4 chr6 69375198 69375650 -80141387 + L1_Mus1 LINE L1 6102 6563 -4 4 1114 371 340 41 41 chr6 69376098 69376267 -80140770 - Tigger5 DNA MER2_type -2202 204 36 4 1114 594 246 15 71 chr6 69376740 69376937 -80140100 + Lx9 LINE L1 6993 7178 -466 4 1114 2000 134 16 0 chr6 69376937 69377251 -80139786 + ORR1A2 LTR MaLR 1 319 -8 4 1114 273 324 38 38 chr6 69377256 69377442 -80139595 + Lx9 LINE L1 7175 7360 -284 4 1114 332 330 0 0 chr6 69377668 69377780 -80139257 + Lx8 LINE L1 6332 6443 -1030 4 1114 750 331 71 61 chr6 69377937 69378443 -80138594 + Lx8 LINE L1 6834 7344 -129 4 1114 2697 198 86 28 chr6 69378615 69379566 -80137471 - RLTR13D1 LTR ERVK -21 1002 1 4 1114 2159 35 0 8 chr6 69380238 69380484 -80136553 - L1_Mm LINE L1 -129 5754 5509 4 1114 1624 45 95 5 chr6 69380484 69380706 -80136331 + L1Md_F3 LINE L1 6343 6584 0 4 1114 2159 35 0 8 chr6 69380706 69380719 -80136318 - L1_Mm LINE L1 -375 5508 5497 4 1114 317 62 21 0 chr6 69382005 69382053 -80134984 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1114 231 36 0 0 chr6 69382959 69382987 -80134050 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 4 1114 932 130 0 46 chr6 69382989 69383142 -80133895 - B1_Mus2 SINE Alu 0 147 2 4 1114 363 327 145 23 chr6 69385133 69385437 -80131600 - MLT1D LTR MaLR -93 412 72 4 1114 210 37 0 0 chr6 69385848 69385875 -80131162 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1114 1252 229 87 29 chr6 69386649 69386996 -80130041 - ORR1C1 LTR MaLR -11 367 1 4 1114 192 40 0 0 chr6 69387553 69387578 -80129459 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 4 1114 258 185 7 0 chr6 69389606 69389662 -80127375 - L1_Mur1 LINE L1 -317 5566 5510 4 1114 1889 209 35 52 chr6 69389667 69390188 -80126849 + L1_Mm LINE L1 4984 5495 -388 4 1114 417 116 0 0 chr6 69390257 69390326 -80126711 - L1_Mm LINE L1 -658 5225 5157 4 1114 1721 91 4 0 chr6 69390340 69390583 -80126454 + L1_Mus2 LINE L1 6115 6358 -208 4 1114 632 97 39 0 chr6 69390584 69390687 -80126350 + L1_Mus2 LINE L1 6457 6563 -4 4 1114 23574 71 1 1 chr6 69390800 69394814 -80122223 - L1Md_F2 LINE L1 -2 6580 2565 4 1114 269 405 8 8 chr6 69395166 69395298 -80121739 - Tigger5 DNA MER2_type -2202 204 73 4 1114 455 264 31 73 chr6 69395802 69395994 -80121043 + Lx9 LINE L1 6993 7176 -468 4 1114 2014 127 16 0 chr6 69395996 69396310 -80120727 + ORR1A2 LTR MaLR 1 319 -8 4 1114 293 294 32 32 chr6 69396313 69396499 -80120538 + Lx9 LINE L1 7173 7358 -286 4 1114 269 330 0 0 chr6 69396727 69396839 -80120198 + Lx8 LINE L1 6332 6443 -1030 4 1114 359 333 45 0 chr6 69397082 69397238 -80119799 + Lx8 LINE L1 6921 7083 -390 4 1114 1328 56 11 0 chr6 69397263 69397441 -80119596 + IAPEY3-int LTR ERVK 7501 7680 0 4 1114 2744 65 6 6 chr6 69397441 69397795 -80119242 + IAPEY2_LTR LTR ERVK 1 354 -3 4 1114 997 109 0 13 chr6 69398571 69398720 -80118317 + B1_Mm SINE Alu 1 147 0 4 1114 378 353 24 14 chr6 69398811 69399018 -80118019 + Lx8 LINE L1 6198 6406 -1067 4 1114 2453 137 14 14 chr6 69399304 69399720 -80117317 + L1_Mus4 LINE L1 6214 6629 -7 4 1114 424 176 24 0 chr6 69399794 69399879 -80117158 + URR1B DNA MER1_type 138 224 -1 4 1114 658 281 16 22 chr6 69400019 69400201 -80116836 - B3 SINE B2 0 216 36 4 1114 465 34 0 0 chr6 69400532 69400591 -80116446 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1114 515 310 18 65 chr6 69400619 69400836 -80116201 - B3 SINE B2 -4 212 6 4 1114 2846 109 18 0 chr6 69401060 69401499 -80115538 - L1_Mus3 LINE L1 -43 6595 6149 5 1114 1566 82 0 0 chr6 69401498 69401718 -80115319 + L1_Mus3 LINE L1 5910 6129 -509 5 1114 2264 244 30 9 chr6 69401739 69402416 -80114621 - MurERV4-int LTR ERVK -1757 3503 2813 5 1114 37311 47 12 3 chr6 69403429 69409719 -80107318 - L1Md_T LINE L1 0 6582 275 5 1114 400 197 97 0 chr6 69409721 69409817 -80107220 - MurERV4-int LTR ERVK -4568 1982 1892 5 1114 2093 119 6 6 chr6 69409817 69410139 -80106898 + L1_Mus3 LINE L1 6308 6629 -9 5 1114 7363 152 28 49 chr6 69410200 69412283 -80104754 - L1VL4 LINE L1 -1379 2180 154 5 1114 705 132 52 65 chr6 69412342 69412496 -80104541 - L1_Mus1 LINE L1 -1 6566 6415 5 1114 968 118 0 0 chr6 69412496 69412640 -80104397 + L1_Mus1 LINE L1 5966 6109 -458 5 1114 793 196 18 13 chr6 69412641 69412825 -80104212 + RMER17B LTR ERVK 429 674 -232 5 1114 33495 74 2 12 chr6 69413958 69420121 -80096916 - L1Md_F2 LINE L1 0 6582 484 5 1114 803 264 29 10 chr6 69421367 69421574 -80095463 - B3 SINE B2 0 216 6 5 1114 180 0 0 0 chr6 69422036 69422056 -80094981 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1114 351 384 15 8 chr6 69422430 69422564 -80094473 - Tigger5 DNA MER2_type -2199 207 73 5 1114 245 262 19 0 chr6 69423222 69423325 -80093712 - Lx9 LINE L1 -5 7639 7535 5 1114 614 311 30 20 chr6 69423398 69423693 -80093344 + Lx9 LINE L1 7114 7411 -233 5 1114 369 255 0 0 chr6 69423894 69423992 -80093045 + Lx8 LINE L1 6343 6440 -1033 5 1114 678 318 83 0 chr6 69424159 69424411 -80092626 + Lx8 LINE L1 6836 7108 -365 5 1114 1773 303 9 7 chr6 69424984 69425683 -80091354 + MYSERV6-int LTR ERVK 457 1156 -7803 5 1114 1132 82 0 0 chr6 69425683 69425830 -80091207 + B1_Mus1 SINE Alu 2 148 0 5 1114 339 121 0 0 chr6 69425853 69425911 -80091126 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 5 1114 604 303 39 78 chr6 69425911 69426269 -80090768 + MYSERV6-int LTR ERVK 1141 1484 -7475 5 1114 2630 200 129 102 chr6 69426395 69427552 -80089485 + RMER3D-int LTR ERVK 489 1676 -1166 5 1114 2739 208 60 43 chr6 69427580 69428466 -80088571 + RMER3D-int LTR ERVK 1937 2837 -5 5 1114 1996 71 234 20 chr6 69428471 69428817 -80088220 + BGLII LTR ERVK 2 421 0 5 1114 311 212 0 29 chr6 69428934 69429002 -80088035 + RLTR14 LTR ERV1 6 71 -311 5 1114 1116 302 20 6 chr6 69429022 69429368 -80087669 + Lx6 LINE L1 6931 7281 -179 5 1114 668 243 21 120 chr6 69429495 69429729 -80087308 + B3 SINE B2 2 212 -4 5 1114 309 26 0 0 chr6 69429891 69429929 -80087108 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1114 191 113 31 31 chr6 69430449 69430513 -80086524 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 5 1114 579 96 0 0 chr6 69430676 69430759 -80086278 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 5 1114 648 274 41 26 chr6 69430760 69431030 -80086007 - Lx LINE L1 -16 7042 6769 5 1114 1006 212 28 22 chr6 69431105 69431423 -80085614 + L1_Mur2 LINE L1 1303 1622 -4255 5 1114 5095 187 35 10 chr6 69431417 69432545 -80084492 + L1_Mur2 LINE L1 4342 5498 -379 5 1114 1828 202 29 8 chr6 69432534 69433012 -80084025 + Lx2 LINE L1 3743 4230 -1647 5 1114 7969 74 12 4 chr6 69433017 69434824 -80082213 - L1Md_F2 LINE L1 -12 6570 4749 5 1114 7998 201 18 29 chr6 69434828 69437626 -80079411 + Lx2 LINE L1 4245 6997 0 5 1114 571 190 8 24 chr6 69437636 69437760 -80079277 - RLTR10A LTR ERVK 0 411 290 5 1114 37242 21 12 16 chr6 69437760 69439393 -80077644 - L1Md_A LINE L1 -17 6565 4924 5 1114 228 183 46 77 chr6 69439393 69439458 -80077579 + RMER20A LTR ERVK 186 248 -268 5 1114 37242 21 12 16 chr6 69439458 69444141 -80072896 - L1Md_A LINE L1 -17 4923 214 5 1114 2065 61 18 0 chr6 69444151 69444431 -80072606 - RLTR10 LTR ERVK -105 285 1 5 1114 3994 228 60 6 chr6 69444431 69445441 -80071596 + Lx2B LINE L1 5931 6995 -5 5 1114 35 24 0 0 chr6 69445455 69445497 -80071540 + AT_rich Low_complexity Low_complexity 1 42 0 5 1114 274 146 21 0 chr6 69445501 69445549 -80071488 + ORR1B2 LTR MaLR 316 364 -3 5 1114 987 136 9 96 chr6 69445999 69446194 -80070843 + L1_Mus3 LINE L1 6422 6599 -39 5 1114 4004 61 10 0 chr6 69446194 69446699 -80070338 + L1_Mus1 LINE L1 6058 6567 0 5 1114 987 136 9 96 chr6 69446699 69446723 -80070314 + L1_Mus3 LINE L1 6600 6622 -16 5 1114 210 45 44 22 chr6 69446724 69446769 -80070268 + (TAA)n Simple_repeat Simple_repeat 2 47 0 5 1114 3507 154 39 15 chr6 69446857 69447505 -80069532 - Lx LINE L1 -4 6650 5988 5 1114 1200 240 99 0 chr6 69448648 69448990 -80068047 - ORR1C1 LTR MaLR -2 376 1 5 1114 22 0 0 0 chr6 69449434 69449456 -80067581 + AT_rich Low_complexity Low_complexity 1 22 0 5 1114 486 75 0 0 chr6 69449537 69449604 -80067433 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 5 1114 29 0 0 0 chr6 69452298 69452327 -80064710 + AT_rich Low_complexity Low_complexity 1 29 0 5 1114 207 0 0 0 chr6 69452362 69452385 -80064652 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 1114 640 366 5 0 chr6 69452385 69452576 -80064461 - B3 SINE B2 -8 208 17 5 1114 180 0 0 0 chr6 69452748 69452768 -80064269 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 5 1114 776 227 128 4 chr6 69452768 69452994 -80064043 - Lx4A LINE L1 -1 7057 6804 5 1114 3945 157 29 0 chr6 69452992 69453898 -80063139 + Lx4A LINE L1 5403 6336 -722 5 1114 6114 141 86 7 chr6 69453974 69455178 -80061859 - Lx3A LINE L1 0 6981 5682 5 1114 5861 148 23 5 chr6 69455208 69456306 -80060731 - L1_Mus4 LINE L1 -5 6631 5504 5 1114 2414 186 2 2 chr6 69456306 69456818 -80060219 + L1_Mus4 LINE L1 4984 5495 -388 5 1114 1710 102 0 0 chr6 69456882 69457126 -80059911 - L1_Mus3 LINE L1 -406 6232 5989 5 1114 284 73 24 0 chr6 69457122 69457163 -80059874 - Lx2B LINE L1 -1077 5923 5882 5 1114 1838 124 10 3 chr6 69457163 69457453 -80059584 + L1_Mus3 LINE L1 6336 6627 -11 5 1114 4880 85 3 7 chr6 69457453 69458130 -80058907 + L1Md_F2 LINE L1 5906 6579 -3 5 1114 271 359 29 51 chr6 69458586 69458724 -80058313 - Tigger5 DNA MER2_type -2202 204 70 5 1114 4882 25 0 0 chr6 69459087 69459647 -80057390 + L1Md_T LINE L1 6022 6581 -1 5 1114 258 266 9 27 chr6 69459972 69460084 -80056953 - Lx9 LINE L1 0 7644 7535 5 1114 572 230 31 92 chr6 69460153 69460349 -80056688 + Lx9 LINE L1 6993 7176 -468 5 1114 2083 137 6 0 chr6 69460351 69460664 -80056373 + ORR1A2 LTR MaLR 1 315 -12 5 1114 257 319 20 67 chr6 69460670 69460865 -80056172 + Lx9 LINE L1 7173 7358 -286 5 1114 323 309 0 0 chr6 69461095 69461205 -80055832 + Lx8 LINE L1 6332 6441 -1032 5 1114 752 325 66 60 chr6 69461363 69461864 -80055173 + Lx8 LINE L1 6836 7339 -134 5 1114 3448 75 2 36 chr6 69462097 69462594 -80054443 - L1Md_F2 LINE L1 0 6582 6103 5 1114 1813 93 21 18 chr6 69463365 69463649 -80053388 - L1_Mus1 LINE L1 -410 6157 5873 5 1114 2820 75 3 0 chr6 69463649 69464023 -80053014 + L1_Mus1 LINE L1 6191 6565 -2 5 1114 1087 291 30 15 chr6 69464530 69464868 -80052169 + Lx6 LINE L1 6870 7212 -248 5 1114 621 272 38 34 chr6 69465183 69465392 -80051645 - B3 SINE B2 -5 211 2 5 1114 216 0 0 0 chr6 69465799 69465823 -80051214 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1114 370 195 24 24 chr6 69466309 69466332 -80050705 + ID SINE ID 59 81 -143 5 1114 1696 28 0 0 chr6 69466332 69466546 -80050491 + 7SLRNA srpRNA srpRNA 1 214 -100 5 1114 411 21 0 0 chr6 69467596 69467644 -80049393 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1115 9459 177 13 10 chr6 69468889 69471749 -80045288 + Lx LINE L1 3765 6638 -16 5 1115 653 330 4 61 chr6 69472069 69472263 -80044774 - B3 SINE B2 0 216 35 5 1115 572 114 9 9 chr6 69472263 69472369 -80044668 + L1_Mus4 LINE L1 6524 6629 -7 5 1115 653 330 4 61 chr6 69472369 69472403 -80044634 - B3 SINE B2 -182 34 1 5 1115 216 0 0 0 chr6 69472884 69472908 -80044129 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1115 2568 97 27 49 chr6 69473072 69473483 -80043554 - L1_Mus2 LINE L1 0 6566 6165 5 1115 589 168 0 71 chr6 69474298 69474452 -80042585 + L1Md_F2 LINE L1 6437 6579 -3 5 1115 4673 142 26 3 chr6 69474563 69475338 -80041699 - Lx LINE L1 -2 6652 5860 5 1115 559 188 26 0 chr6 69475339 69475456 -80041581 - Lx3_Mus LINE L1 -558 6451 6332 5 1115 23 54 0 0 chr6 69475460 69475497 -80041540 + AT_rich Low_complexity Low_complexity 1 37 0 5 1115 537 30 0 0 chr6 69475504 69475571 -80041466 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1115 23 33 0 0 chr6 69475584 69475614 -80041423 + AT_rich Low_complexity Low_complexity 1 30 0 5 1115 6496 47 1 0 chr6 69475614 69476410 -80040627 - L1Md_A LINE L1 -3 6579 5783 5 1115 2171 97 6 32 chr6 69476762 69477104 -80039933 - RLTR13A3 LTR ERVK 0 978 646 5 1115 1861 60 0 33 chr6 69477124 69477400 -80039637 - ETnERV3-int LTR ERVK -9 5799 5533 5 1115 1617 67 22 0 chr6 69477399 69477623 -80039414 - ETnERV3-int LTR ERVK -1213 4595 4367 5 1115 2517 58 44 6 chr6 69477621 69477764 -80039273 - RLTR45-int LTR ERVK -2342 4902 4762 5 1115 189 0 0 0 chr6 69477764 69477785 -80039252 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 5 1115 2517 58 44 6 chr6 69477785 69478004 -80039033 - RLTR45-int LTR ERVK -2483 4761 4527 5 1115 3579 112 12 9 chr6 69477997 69478575 -80038462 - ETnERV2-int LTR ERVK -263 5545 4966 5 1115 3628 78 0 21 chr6 69478572 69479106 -80037931 - ETnERV2-int LTR ERVK -3240 2568 2046 5 1115 6418 65 0 0 chr6 69479106 69479963 -80037074 - L1Md_T LINE L1 0 6582 5726 5 1115 11201 84 11 9 chr6 69479963 69481591 -80035446 - ETnERV2-int LTR ERVK -5474 1932 302 5 1115 186 43 0 0 chr6 69481607 69481630 -80035407 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 5 1115 33199 77 4 13 chr6 69481633 69487738 -80029299 - L1Md_F2 LINE L1 -19 6563 517 5 1115 572 85 0 0 chr6 69487740 69487822 -80029215 - ETnERV2-int LTR ERVK -5541 267 186 5 1115 900 101 155 12 chr6 69488090 69488251 -80028786 - ETnERV2-int LTR ERVK -5622 186 3 5 1115 5287 105 123 36 chr6 69488253 69489152 -80027885 - RLTR13A3 LTR ERVK 0 978 1 5 1115 947 101 119 6 chr6 69489152 69489311 -80027726 - L1_Mus1 LINE L1 -1 6566 6390 5 1115 5618 65 23 1 chr6 69489323 69490095 -80026942 + L1_Mus1 LINE L1 5587 6375 -192 5 1115 22 0 0 0 chr6 69490549 69490571 -80026466 + AT_rich Low_complexity Low_complexity 1 22 0 5 1115 345 246 53 8 chr6 69490571 69490702 -80026335 - Lx4B LINE L1 -7 7051 6915 5 1115 2149 177 72 5 chr6 69490731 69491173 -80025864 - Lx4B LINE L1 -313 6745 6274 5 1115 2081 210 52 31 chr6 69492112 69492245 -80024792 + Lx2B LINE L1 5808 5934 -1066 5 1115 3263 164 0 0 chr6 69492245 69492780 -80024257 + Lx2 LINE L1 6463 6997 0 5 1115 2081 210 52 31 chr6 69492780 69493202 -80023835 + Lx2B LINE L1 5935 6375 -625 5 1115 25 65 0 0 chr6 69493564 69493610 -80023427 + AT_rich Low_complexity Low_complexity 1 46 0 5 1115 297 0 0 0 chr6 69493691 69493724 -80023313 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 5 1115 21 57 0 0 chr6 69495845 69495880 -80021157 + AT_rich Low_complexity Low_complexity 1 35 0 5 1115 6268 136 8 32 chr6 69495981 69497576 -80019461 + L1VL1 LINE L1 1 1551 -2147 5 1115 7192 105 5 1 chr6 69497578 69499384 -80017653 + L1_Mus1 LINE L1 4754 6567 0 5 1115 3166 150 3 8 chr6 69499407 69500000 -80017037 + L1_Mm LINE L1 1753 2342 -3541 5 1115 11374 141 21 18 chr6 69500000 69502010 -80015027 + L1_Mm LINE L1 2343 4357 -1526 1 1115 1239 220 22 4 chr6 69502011 69502280 -80014757 + Lx2 LINE L1 6717 6990 -7 2 1115 3686 240 66 7 chr6 69502289 69503287 -80013750 + Lx2B LINE L1 5931 6987 -13 3 1115 379 179 119 0 chr6 69503290 69503317 -80013720 + ORR1C2 LTR MaLR 289 323 -61 4 1115 234 0 0 0 chr6 69503317 69503343 -80013694 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1115 379 179 119 0 chr6 69503343 69503399 -80013638 + ORR1C2 LTR MaLR 324 381 -3 4 1115 379 349 124 34 chr6 69504426 69504806 -80012231 - MLT1D LTR MaLR -15 490 77 6 1115 9611 58 5 2 chr6 69505665 69507638 -80009399 - L1Md_F3 LINE L1 -1 6583 4601 7 1115 8183 50 9 0 chr6 69507650 69508677 -80008360 - L1Md_T LINE L1 -2 6580 5569 8 1115 25223 78 6 4 chr6 69508662 69512816 -80004221 - L1Md_T LINE L1 -1256 4627 509 8 1115 285 26 0 49 chr6 69512851 69512892 -80004145 + L1Md_F3 LINE L1 6013 6051 -533 9 1115 1408 108 5 9 chr6 69512913 69513127 -80003910 - L1_Mus2 LINE L1 0 6566 6354 1 1115 4220 49 0 6 chr6 69513121 69513650 -80003387 + L1Md_F3 LINE L1 6058 6583 -1 9 1115 320 397 8 8 chr6 69514078 69514210 -80002827 - Tigger5 DNA MER2_type -2202 204 73 1 1115 529 228 17 90 chr6 69514704 69514882 -80002155 + Lx9 LINE L1 6993 7157 -487 1 1115 2075 137 6 0 chr6 69514903 69515218 -80001819 + ORR1A2 LTR MaLR 1 317 -10 1 1115 386 313 19 38 chr6 69515223 69515432 -80001605 + Lx9 LINE L1 7173 7377 -267 1 1115 310 267 109 0 chr6 69515638 69515739 -80001298 + Lx8 LINE L1 6332 6443 -1030 1 1115 370 343 141 63 chr6 69515899 69516359 -80000678 + Lx8 LINE L1 6836 7331 -142 1 1115 1077 116 0 0 chr6 69517829 69518002 -79999035 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 1 1115 1213 275 98 6 chr6 69518026 69518374 -79998663 + Lx6 LINE L1 6870 7249 -211 1 1115 1549 37 0 16 chr6 69518632 69518824 -79998213 - B2_Mm1t SINE B2 -4 189 1 1 1115 404 342 37 43 chr6 69518875 69519037 -79998000 - B3 SINE B2 -5 211 51 1 1115 1279 36 12 0 chr6 69520344 69520512 -79996525 + L1Md_A LINE L1 6411 6580 -2 1 1115 188 244 11 0 chr6 69521103 69521193 -79995844 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1115 22 35 0 0 chr6 69521196 69521225 -79995812 + AT_rich Low_complexity Low_complexity 1 29 0 2 1115 639 84 0 0 chr6 69522077 69522172 -79994865 + (TTTC)n Simple_repeat Simple_repeat 1 95 0 2 1115 605 107 0 0 chr6 69522174 69522258 -79994779 - B1_Mus2 SINE Alu -62 85 2 2 1115 248 254 23 23 chr6 69522258 69522303 -79994734 - ORR1B1-int LTR MaLR -777 732 604 2 1115 275 349 148 24 chr6 69524255 69524546 -79992491 - MLT1D LTR MaLR -107 398 72 2 1115 22 111 0 0 chr6 69525176 69525275 -79991762 + AT_rich Low_complexity Low_complexity 1 99 0 2 1115 212 130 22 0 chr6 69525298 69525344 -79991693 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2 1115 328 219 25 0 chr6 69527350 69527448 -79989589 - L1_Mur1 LINE L1 -554 5630 5507 2 1115 2200 216 8 16 chr6 69527443 69527957 -79989080 + L1_Mur1 LINE L1 4978 5487 -390 2 1115 448 116 0 0 chr6 69528029 69528098 -79988939 - L1_Mm LINE L1 -658 5225 5157 2 1115 3137 89 24 0 chr6 69528099 69528550 -79988487 + L1_Mus1 LINE L1 6102 6563 -4 3 1115 291 364 35 35 chr6 69528996 69529167 -79987870 - Tigger5 DNA MER2_type -2198 208 38 3 1115 570 243 15 77 chr6 69529641 69529837 -79987200 + Lx9 LINE L1 6993 7176 -468 3 1115 2058 127 16 0 chr6 69529839 69530153 -79986884 + ORR1A2 LTR MaLR 1 319 -8 3 1115 405 253 65 54 chr6 69530156 69530340 -79986697 + Lx9 LINE L1 7173 7358 -286 3 1115 414 286 0 0 chr6 69530565 69530677 -79986360 + Lx8 LINE L1 6332 6443 -1030 3 1115 584 324 87 7 chr6 69530835 69531121 -79985916 + Lx8 LINE L1 6834 7142 -331 3 1115 1179 43 0 181 chr6 69531949 69532175 -79984862 + RLTR10B2 LTR ERVK 1 185 -180 3 1115 258 344 167 28 chr6 69534177 69534464 -79982573 - MLT1D LTR MaLR -107 398 72 3 1115 1083 249 108 38 chr6 69535670 69536013 -79981024 - ORR1C1 LTR MaLR -11 367 1 3 1115 604 89 20 0 chr6 69536565 69536666 -79980371 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 3 1115 22 0 0 0 chr6 69536806 69536828 -79980209 + AT_rich Low_complexity Low_complexity 1 22 0 3 1115 391 132 63 38 chr6 69538637 69538716 -79978321 - L1_Mur1 LINE L1 -299 5587 5507 4 1115 2297 206 12 10 chr6 69538716 69539227 -79977810 + L1_Mur1 LINE L1 4978 5489 -388 4 1115 443 130 0 0 chr6 69539296 69539365 -79977672 - L1_Mm LINE L1 -658 5225 5157 4 1115 3095 122 7 0 chr6 69539366 69539824 -79977213 + L1_Mus1 LINE L1 6102 6562 -5 4 1115 1618 38 0 70 chr6 69540030 69540259 -79976778 - L1Md_T LINE L1 0 6582 6370 4 1115 37805 53 9 0 chr6 69540260 69546324 -79970713 - L1Md_T LINE L1 -369 6213 98 4 1115 498 260 15 99 chr6 69547191 69547392 -79969645 + Lx9 LINE L1 6993 7176 -468 4 1115 1892 153 16 0 chr6 69547394 69547708 -79969329 + ORR1A2 LTR MaLR 1 319 -8 4 1115 428 266 48 53 chr6 69547711 69547898 -79969139 + Lx9 LINE L1 7173 7358 -286 4 1115 422 277 0 0 chr6 69548126 69548238 -79968799 + Lx8 LINE L1 6332 6443 -1030 4 1115 697 305 96 0 chr6 69548395 69548687 -79968350 + Lx8 LINE L1 6834 7153 -320 4 1115 219 211 33 0 chr6 69551044 69551134 -79965903 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 1115 207 186 0 0 chr6 69552013 69552056 -79964981 + T-rich Low_complexity Low_complexity 3 45 0 4 1115 1020 130 0 0 chr6 69552057 69552203 -79964834 - B1_Mus2 SINE Alu 0 147 2 4 1115 310 331 150 23 chr6 69554210 69554470 -79962567 - MLT1D LTR MaLR -107 398 106 5 1115 1107 264 84 25 chr6 69555680 69556037 -79961000 - ORR1C1 LTR MaLR 0 378 1 5 1115 216 95 0 67 chr6 69556444 69556489 -79960548 + (TTAAA)n Simple_repeat Simple_repeat 5 46 0 5 1115 270 73 0 0 chr6 69556596 69556637 -79960400 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 5 1115 21 36 0 0 chr6 69558081 69558109 -79958928 + AT_rich Low_complexity Low_complexity 1 28 0 5 1115 21 57 0 0 chr6 69558249 69558284 -79958753 + AT_rich Low_complexity Low_complexity 1 35 0 5 1115 1926 233 2 13 chr6 69558477 69558947 -79958090 + L1_Mm LINE L1 5035 5499 -384 5 1115 464 101 0 0 chr6 69559012 69559081 -79957956 - L1_Mm LINE L1 -658 5225 5157 5 1115 3423 78 7 2 chr6 69559082 69559542 -79957495 + L1_Mus1 LINE L1 6102 6563 -4 5 1115 260 389 30 30 chr6 69559983 69560150 -79956887 - Tigger5 DNA MER2_type -2202 204 38 5 1115 412 241 36 115 chr6 69560621 69560755 -79956282 + Lx9 LINE L1 6993 7112 -532 6 1115 3666 78 93 2 chr6 69560755 69561272 -79955765 - LTRIS2 LTR ERV1 0 564 1 6 1115 412 241 36 115 chr6 69561272 69561329 -79955708 + Lx9 LINE L1 7113 7169 -475 6 1115 1926 147 16 0 chr6 69561338 69561652 -79955385 + ORR1A2 LTR MaLR 1 319 -8 6 1115 263 241 68 57 chr6 69561655 69561743 -79955294 + Lx9 LINE L1 7173 7261 -383 6 1115 666 309 76 10 chr6 69562358 69562646 -79954391 + Lx8 LINE L1 6834 7140 -333 6 1115 2690 193 92 30 chr6 69563034 69563983 -79953054 - RLTR13D1 LTR ERVK -21 1002 1 6 1115 807 66 0 0 chr6 69565307 69565413 -79951624 + (TA)n Simple_repeat Simple_repeat 1 106 0 6 1115 426 53 0 0 chr6 69565414 69565471 -79951566 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1115 939 288 118 6 chr6 69565522 69565837 -79951200 + Lx6 LINE L1 6900 7249 -211 6 1115 357 279 46 99 chr6 69566136 69566287 -79950750 - B3 SINE B2 -5 211 69 6 1115 24 0 0 0 chr6 69566508 69566532 -79950505 + AT_rich Low_complexity Low_complexity 1 24 0 6 1115 23 0 0 0 chr6 69566596 69566619 -79950418 + GC_rich Low_complexity Low_complexity 1 23 0 7 1115 210 211 17 17 chr6 69568199 69568257 -79948780 + (TATG)n Simple_repeat Simple_repeat 2 59 0 7 1115 381 43 0 0 chr6 69568266 69568313 -79948724 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1115 1028 125 0 0 chr6 69569227 69569371 -79947666 - B1_Mus2 SINE Alu -2 145 2 7 1115 263 340 132 38 chr6 69571315 69571657 -79945380 - MLT1D LTR MaLR -60 445 72 7 1115 202 145 15 75 chr6 69572033 69572100 -79944937 + A-rich Low_complexity Low_complexity 2 64 0 7 1115 947 260 75 89 chr6 69572861 69573233 -79943804 - ORR1C1 LTR MaLR -11 367 1 7 1115 18244 54 6 1 chr6 69573274 69576291 -79940746 - L1Md_F2 LINE L1 0 6582 3552 7 1115 4830 60 2 0 chr6 69576286 69576917 -79940120 + L1Md_F2 LINE L1 2923 3554 -2329 7 1115 2281 62 6 53 chr6 69577014 69577352 -79939685 + RLTRETN_Mm LTR ERVK 1 322 0 7 1115 271 339 150 24 chr6 69578582 69578875 -79938162 - MLT1D LTR MaLR -107 398 69 7 1115 1084 247 90 29 chr6 69580084 69580430 -79936607 - ORR1C1 LTR MaLR -11 367 1 8 1115 28 48 0 0 chr6 69580846 69580888 -79936149 + AT_rich Low_complexity Low_complexity 1 42 0 8 1115 21 57 0 0 chr6 69582626 69582661 -79934376 + AT_rich Low_complexity Low_complexity 1 35 0 8 1115 386 98 0 0 chr6 69583047 69583098 -79933939 - L1_Mur1 LINE L1 -329 5557 5507 8 1115 2253 199 40 4 chr6 69583098 69583592 -79933445 + L1_Mm LINE L1 4984 5495 -388 8 1115 409 145 0 0 chr6 69583661 69583730 -79933307 - L1_Mm LINE L1 -658 5225 5157 8 1115 3275 90 15 0 chr6 69583731 69584185 -79932852 + L1_Mus1 LINE L1 6102 6562 -5 8 1115 254 389 30 36 chr6 69584637 69584805 -79932232 - Tigger5 DNA MER2_type -2202 204 38 8 1115 547 320 29 19 chr6 69585185 69585392 -79931645 + Lx8 LINE L1 6198 6406 -1067 8 1115 2429 132 10 8 chr6 69585696 69586093 -79930944 + L1_Mus4 LINE L1 6231 6628 -8 8 1115 431 176 24 0 chr6 69586166 69586251 -79930786 + URR1B DNA MER1_type 138 224 -1 9 1115 674 275 16 22 chr6 69586390 69586572 -79930465 - B3 SINE B2 0 216 36 9 1115 264 30 0 0 chr6 69586903 69586936 -79930101 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1115 505 322 9 55 chr6 69586964 69587181 -79929856 - B3 SINE B2 -4 212 6 9 1115 3044 102 18 0 chr6 69587401 69587840 -79929197 - L1_Mus3 LINE L1 -43 6595 6149 9 1115 1661 77 0 0 chr6 69587839 69588059 -79928978 + L1_Mus3 LINE L1 5910 6129 -509 9 1115 2742 243 34 8 chr6 69588080 69588835 -79928202 - MurERV4-int LTR ERVK -1757 3503 2729 9 1115 1270 139 9 14 chr6 69588854 69589066 -79927971 + L1_Mus3 LINE L1 6374 6584 -54 9 1115 369 0 0 0 chr6 69589315 69589356 -79927681 + (TC)n Simple_repeat Simple_repeat 1 41 0 9 1115 594 0 0 0 chr6 69589356 69589421 -79927616 + (CA)n Simple_repeat Simple_repeat 1 66 0 9 1115 1329 163 70 55 chr6 69589456 69589729 -79927308 + ORR1A4 LTR MaLR 1 277 -52 9 1115 26 64 0 0 chr6 69589771 69589818 -79927219 + AT_rich Low_complexity Low_complexity 1 47 0 1 1115 462 279 84 48 chr6 69589825 69590160 -79926877 - MurERV4-int LTR ERVK -6808 2151 1805 9 1115 181 245 0 86 chr6 69590191 69590249 -79926788 - L3 LINE CR1 -3588 901 849 1 1115 273 337 14 53 chr6 69590249 69590534 -79926503 - MurERV4-int LTR ERVK -7245 1714 1441 9 1115 6284 112 27 3 chr6 69590557 69591491 -79925546 - L1_Mus3 LINE L1 -6 6632 5677 1 1115 881 20 0 0 chr6 69591488 69591587 -79925450 + L1Md_T LINE L1 5488 5586 -297 1 1115 8395 20 19 0 chr6 69591587 69592563 -79924474 + L1Md_T LINE L1 5587 6581 -1 1 1115 17703 161 85 113 chr6 69592596 69597923 -79919114 - L1VL4 LINE L1 -198 5685 506 1 1115 723 125 54 27 chr6 69597977 69598125 -79918912 - L1_Mus1 LINE L1 -1 6566 6415 1 1115 1019 118 0 0 chr6 69598125 69598269 -79918768 + L1_Mus1 LINE L1 5966 6109 -458 1 1115 813 177 17 13 chr6 69598270 69598449 -79918588 + RMER17B LTR ERVK 429 669 -237 1 1116 773 283 24 10 chr6 69600808 69601015 -79916022 - B3 SINE B2 -1 215 6 1 1116 341 384 15 8 chr6 69601874 69602008 -79915029 - Tigger5 DNA MER2_type -2199 207 73 1 1116 304 252 19 0 chr6 69602669 69602772 -79914265 - Lx9 LINE L1 -5 7639 7535 1 1116 729 304 30 20 chr6 69602845 69603140 -79913897 + Lx9 LINE L1 7114 7411 -233 1 1116 450 277 0 0 chr6 69603320 69603439 -79913598 + Lx8 LINE L1 6322 6440 -1033 1 1116 790 298 83 0 chr6 69603605 69603857 -79913180 + Lx8 LINE L1 6836 7108 -365 1 1116 2590 295 23 51 chr6 69604429 69605126 -79911911 + MYSERV6-int LTR ERVK 457 1149 -7810 1 1116 1112 88 0 0 chr6 69605126 69605273 -79911764 + B1_Mus1 SINE Alu 2 148 0 1 1116 2590 295 23 51 chr6 69605273 69605291 -79911746 + MYSERV6-int LTR ERVK 1150 1153 -7806 1 1116 441 36 0 0 chr6 69605291 69605346 -79911691 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1 1116 2590 295 23 51 chr6 69605346 69605687 -79911350 + MYSERV6-int LTR ERVK 1154 1484 -7475 1 1116 2986 208 120 103 chr6 69605810 69606998 -79910039 + RMER3D-int LTR ERVK 486 1694 -1148 1 1116 2951 210 60 43 chr6 69607005 69607891 -79909146 + RMER3D-int LTR ERVK 1937 2837 -5 1 1116 1277 84 52 10 chr6 69607896 69608088 -79908949 + BGLII LTR ERVK 1 200 -221 1 1116 15655 65 0 29 chr6 69608090 69610854 -79906183 - L1Md_F LINE L1 -2691 3192 511 1 1116 316 233 0 0 chr6 69613506 69613579 -79903458 + L1_Mur2 LINE L1 5427 5499 -378 1 1116 352 167 0 0 chr6 69613572 69613632 -79903405 + Lx2 LINE L1 3750 3809 -2068 1 1116 17471 19 0 0 chr6 69613634 69615754 -79901283 + L1Md_T LINE L1 3468 5587 -296 1 1116 8351 39 0 0 chr6 69615755 69616749 -79900288 + L1Md_T LINE L1 5589 6582 0 1 1116 509 87 364 33 chr6 69616749 69616911 -79900126 + BGLII LTR ERVK 206 421 0 1 1116 311 212 0 29 chr6 69617028 69617096 -79899941 + RLTR14 LTR ERV1 6 71 -311 1 1116 1107 257 11 56 chr6 69617116 69617491 -79899546 + Lx6 LINE L1 6931 7550 -146 1 1116 679 242 21 119 chr6 69617588 69617823 -79899214 + B3 SINE B2 1 212 -4 1 1116 234 0 0 0 chr6 69617987 69618013 -79899024 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1116 189 100 19 39 chr6 69618543 69618595 -79898442 + (CAAA)n Simple_repeat Simple_repeat 3 53 0 1 1116 567 78 0 0 chr6 69618760 69618837 -79898200 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 1 1116 683 260 38 30 chr6 69618838 69619104 -79897933 - Lx4B LINE L1 -16 7042 6775 1 1116 966 222 28 22 chr6 69619185 69619503 -79897534 + L1_Mur2 LINE L1 1303 1622 -4255 1 1116 4983 187 48 10 chr6 69619497 69620612 -79896425 + L1_Mur2 LINE L1 4342 5498 -379 1 1116 1922 198 29 4 chr6 69620601 69621077 -79895960 + L1_Mur2 LINE L1 3743 4230 -1647 1 1116 8045 68 9 5 chr6 69621073 69622890 -79894147 - L1Md_F2 LINE L1 -4 6578 4749 1 1116 7748 202 22 31 chr6 69622894 69625683 -79891354 + Lx2 LINE L1 4245 6997 0 1 1116 3919 232 58 6 chr6 69625687 69626699 -79890338 + Lx2B LINE L1 5931 6995 -5 1 1116 34 42 0 0 chr6 69626713 69626761 -79890276 + AT_rich Low_complexity Low_complexity 1 48 0 1 1116 274 146 21 0 chr6 69626765 69626813 -79890224 + ORR1B2 LTR MaLR 316 364 -3 1 1116 1018 142 9 54 chr6 69627264 69627459 -79889578 + L1_Mus3 LINE L1 6422 6610 -28 1 1116 4023 58 16 0 chr6 69627459 69627961 -79889076 + L1_Mus1 LINE L1 6058 6567 0 1 1116 1018 142 9 54 chr6 69627961 69627988 -79889049 + L1_Mus3 LINE L1 6611 6634 -4 1 1116 184 77 25 25 chr6 69627993 69628033 -79889004 + (TAA)n Simple_repeat Simple_repeat 2 41 0 1 1116 3702 163 15 14 chr6 69628129 69628789 -79888248 - Lx LINE L1 -6 6648 5988 1 1116 1290 225 99 0 chr6 69629746 69630088 -79886949 - ORR1C1 LTR MaLR -2 376 1 1 1116 22 0 0 0 chr6 69630532 69630554 -79886483 + AT_rich Low_complexity Low_complexity 1 22 0 1 1116 845 74 8 0 chr6 69630635 69630757 -79886280 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 1 1116 31 0 0 0 chr6 69633427 69633458 -79883579 + AT_rich Low_complexity Low_complexity 1 31 0 1 1116 387 0 0 0 chr6 69633493 69633536 -79883501 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1116 549 354 61 0 chr6 69633536 69633717 -79883320 - B3 SINE B2 -8 208 17 1 1116 28 0 0 0 chr6 69633879 69633907 -79883130 + AT_rich Low_complexity Low_complexity 1 28 0 1 1116 696 246 138 4 chr6 69633907 69634132 -79882905 - Lx4A LINE L1 0 7058 6804 1 1116 6311 161 27 7 chr6 69634130 69635510 -79881527 + Lx4A LINE L1 5403 6806 -252 1 1116 22 56 0 0 chr6 69635510 69635546 -79881491 + AT_rich Low_complexity Low_complexity 1 36 0 1 1116 4353 151 130 6 chr6 69635546 69636502 -79880535 - Lx3A LINE L1 0 6981 5908 1 1116 677 254 47 31 chr6 69636510 69636701 -79880336 - B3A SINE B2 0 198 5 1 1116 4961 13 0 0 chr6 69636978 69637533 -79879504 - L1Md_T LINE L1 0 6582 6028 1 1116 248 278 0 0 chr6 69638412 69638484 -79878553 + L1_Mur2 LINE L1 5427 5498 -379 1 1116 9498 172 13 13 chr6 69638489 69641373 -79875664 + Lx LINE L1 3764 6648 -6 1 1116 764 302 4 57 chr6 69641686 69641879 -79875158 - B3 SINE B2 0 216 35 1 1116 637 86 9 9 chr6 69641879 69641985 -79875052 + L1_Mus4 LINE L1 6524 6629 -7 1 1116 764 302 4 57 chr6 69641985 69642019 -79875018 - B3 SINE B2 -182 34 1 1 1116 2620 97 28 18 chr6 69642683 69643081 -79873956 - L1_Mus2 LINE L1 0 6566 6165 1 1116 838 94 8 0 chr6 69643899 69644026 -79873011 + L1_Mus2 LINE L1 6433 6560 -6 1 1116 4676 142 26 4 chr6 69644158 69644934 -79872103 - Lx LINE L1 -2 6652 5860 1 1116 651 154 26 0 chr6 69644935 69645052 -79871985 - Lx3_Mus LINE L1 -558 6451 6332 1 1116 801 101 112 59 chr6 69645370 69645539 -79871498 - L1_Mus1 LINE L1 -1 6566 6389 1 1116 5674 62 23 1 chr6 69645550 69646322 -79870715 + L1_Mus1 LINE L1 5587 6375 -192 1 1116 287 232 94 16 chr6 69646799 69646926 -79870111 - Lx4B LINE L1 -7 7051 6915 1 1116 2177 184 69 5 chr6 69646951 69647398 -79869639 - Lx4B LINE L1 -309 6749 6274 1 1116 2048 207 58 25 chr6 69648324 69648453 -79868584 + Lx2B LINE L1 5808 5937 -1063 1 1116 3504 150 0 0 chr6 69648453 69648992 -79868045 + Lx2 LINE L1 6459 6997 0 1 1116 2048 207 58 25 chr6 69648992 69649412 -79867625 + Lx2B LINE L1 5938 6375 -625 1 1116 498 170 0 0 chr6 69649592 69649686 -79867351 + (TATG)n Simple_repeat Simple_repeat 3 96 0 1 1116 990 32 58 0 chr6 69649976 69650132 -79866905 + (TAGA)n Simple_repeat Simple_repeat 2 166 0 1 1116 28 29 0 0 chr6 69652243 69652278 -79864759 + AT_rich Low_complexity Low_complexity 1 35 0 1 1116 1232 225 7 33 chr6 69652381 69652680 -79864357 + L1VL1 LINE L1 3 293 -6129 1 1116 4218 161 27 58 chr6 69652680 69653569 -79863468 - RLTR13A3 LTR ERVK 0 978 118 1 1116 5097 109 3 17 chr6 69653584 69654860 -79862177 + L1VL1 LINE L1 288 1542 -2156 1 1116 3741 42 11 17 chr6 69654860 69655338 -79861699 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1116 13284 68 7 8 chr6 69655340 69657144 -79859893 - IAPEz-int LTR ERVK -2 6479 4678 1 1116 1715 107 8 0 chr6 69657165 69657417 -79859620 - IAPEz-int LTR ERVK -5183 2497 2244 1 1116 862 52 26 0 chr6 69657412 69657528 -79859509 - IAPEz-int LTR ERVK -5004 1477 1359 1 1116 3344 63 1 16 chr6 69657528 69658106 -79858931 - IAPEz-int LTR ERVK -5819 662 168 1 1116 248 244 0 0 chr6 69658106 69658151 -79858886 - RLTR27 LTR ERVK -34 275 231 1 1116 930 116 30 81 chr6 69658159 69658356 -79858681 - IAPEz-int LTR ERVK -6286 195 9 1 1116 3753 38 11 17 chr6 69658357 69658835 -79858202 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1116 6969 107 6 0 chr6 69658852 69660635 -79856402 + L1_Mus1 LINE L1 4754 6547 -20 1 1116 3300 59 5 2 chr6 69660635 69661058 -79855979 + L1Md_F3 LINE L1 6160 6583 -1 1 1116 6594 95 7 0 chr6 69661058 69661076 -79855961 + L1_Mus1 LINE L1 6548 6565 -2 1 1116 15051 139 31 11 chr6 69661115 69663889 -79853148 + L1_Mm LINE L1 1753 4579 -1304 1 1116 219 103 0 0 chr6 69663932 69663971 -79853066 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1116 1058 258 8 33 chr6 69663989 69664347 -79852690 - MTD LTR MaLR 0 419 8 1 1116 315 351 17 46 chr6 69664481 69664654 -79852383 + L1MC1 LINE L1 5659 5826 -507 1 1116 2118 187 2 2 chr6 69664723 69665119 -79851918 - Lx2 LINE L1 -2 6995 6600 1 1116 423 340 80 3 chr6 69665138 69665465 -79851572 + L1MC1 LINE L1 5919 6270 -63 1 1116 978 280 27 17 chr6 69665821 69666216 -79850821 - Lx2B LINE L1 -17 6983 6627 1 1116 705 293 88 9 chr6 69666336 69666553 -79850484 + RLTR18 LTR ERVK 383 616 0 1 1116 1184 303 69 7 chr6 69667406 69667799 -79849238 - Lx9 LINE L1 -26 7618 7209 1 1116 393 22 0 0 chr6 69667799 69667845 -79849192 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1 1116 1184 303 69 7 chr6 69667845 69667989 -79849048 - Lx9 LINE L1 -436 7208 7049 1 1116 22 0 0 0 chr6 69668846 69668868 -79848169 + AT_rich Low_complexity Low_complexity 1 22 0 1 1116 347 280 29 81 chr6 69669162 69669298 -79847739 - MER70B LTR ERVL -422 156 28 1 1116 1617 78 0 9 chr6 69669518 69669739 -79847298 + L1_Mus2 LINE L1 6347 6565 -1 1 1116 1065 274 103 44 chr6 69670707 69671184 -79845853 + RLTR20B3 LTR ERVK 21 525 -52 1 1116 25 31 0 0 chr6 69671197 69671229 -79845808 + AT_rich Low_complexity Low_complexity 1 32 0 1 1116 991 246 4 9 chr6 69671669 69671895 -79845142 - URR1B DNA MER1_type 0 225 1 1 1116 4028 52 6 2 chr6 69672193 69672698 -79844339 - L1Md_F2 LINE L1 -1 6581 6075 1 1116 252 297 44 0 chr6 69672701 69672792 -79844245 + MLT1A1 LTR MaLR 298 392 -16 1 1116 711 286 31 9 chr6 69673290 69673516 -79843521 + Lx8 LINE L1 6432 6662 -811 1 1116 200 197 13 53 chr6 69673630 69673705 -79843332 + A-rich Low_complexity Low_complexity 2 73 0 1 1116 203 0 0 36 chr6 69673743 69673771 -79843266 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1116 1136 88 0 0 chr6 69673771 69673919 -79843118 + B1_Mus1 SINE Alu 1 148 0 1 1116 803 239 43 0 chr6 69673924 69674133 -79842904 - Lx7 LINE L1 -349 7347 7130 1 1116 1155 283 36 3 chr6 69674157 69674494 -79842543 + L1_Mur3 LINE L1 5424 5771 -109 1 1116 447 374 69 14 chr6 69675053 69675270 -79841767 + B4A SINE B4 22 250 -42 1 1116 942 78 0 0 chr6 69675324 69675452 -79841585 + (GA)n Simple_repeat Simple_repeat 2 129 0 1 1116 465 226 121 6 chr6 69675518 69675638 -79841399 - B1F2 SINE Alu -1 148 16 1 1116 195 183 161 32 chr6 69677711 69677773 -79839264 - L4 LINE RTE -1659 370 301 1 1116 578 296 75 63 chr6 69677975 69678254 -79838783 + L1_Rod LINE L1 5396 5687 -160 2 1116 984 143 11 42 chr6 69678254 69678444 -79838593 - L1_Mus3 LINE L1 -6 6632 6449 2 1116 578 296 75 63 chr6 69678444 69678590 -79838447 + L1_Rod LINE L1 5688 5826 -21 2 1116 823 74 26 20 chr6 69679112 69679263 -79837774 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 2 1116 1708 274 59 115 chr6 69679339 69680337 -79836700 - Lx7 LINE L1 0 7696 6755 2 1116 7022 168 36 15 chr6 69680354 69681647 -79835390 - Lx2 LINE L1 -6 6991 5672 2 1116 1443 206 93 80 chr6 69681647 69682540 -79834497 + MusHAL1 LINE L1 127 914 -2702 2 1116 3202 53 0 0 chr6 69682568 69683007 -79834030 - L1Md_F2 LINE L1 0 6582 6186 2 1116 22 0 0 0 chr6 69684564 69684586 -79832451 + AT_rich Low_complexity Low_complexity 1 22 0 2 1116 277 141 370 27 chr6 69684644 69684717 -79832320 + BGLII LTR ERVK 324 421 0 2 1116 336 102 0 78 chr6 69684764 69684828 -79832209 + RMER3D-int LTR ERVK 669 727 -2115 2 1116 519 235 5 96 chr6 69685294 69685492 -79831545 - RMER10B LTR ERVL -136 262 83 2 1116 6133 194 33 23 chr6 69685492 69686963 -79830074 + Lx2B LINE L1 2425 3910 -1976 2 1116 5412 220 58 36 chr6 69686959 69689138 -79827899 + Lx2B LINE L1 4629 6998 -2 2 1116 22 0 0 0 chr6 69689281 69689303 -79827734 + AT_rich Low_complexity Low_complexity 1 22 0 2 1116 5912 172 34 5 chr6 69689792 69690874 -79826163 + Lx3C LINE L1 5836 6949 -27 2 1116 2897 83 8 2 chr6 69690891 69691289 -79825748 - MTB LTR MaLR 0 400 1 2 1116 380 270 83 30 chr6 69691296 69691319 -79825718 - RMER12 LTR ERVK -249 1323 1302 2 1116 345 102 0 0 chr6 69691319 69691378 -79825659 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1116 2360 196 61 15 chr6 69691378 69691911 -79825126 - RMER12 LTR ERVK -271 1301 350 2 1116 31554 85 6 4 chr6 69691911 69695236 -79821801 + L1Md_F2 LINE L1 869 4196 -1687 2 1116 480 35 0 0 chr6 69695236 69695294 -79821743 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1116 31554 77 5 4 chr6 69695294 69696676 -79820361 + L1Md_F2 LINE L1 4197 5585 -298 2 1116 7082 86 13 6 chr6 69696677 69697665 -79819372 + L1Md_F2 LINE L1 5588 6582 0 2 1116 224 298 0 0 chr6 69697727 69697784 -79819253 + B3 SINE B2 6 62 -154 2 1116 918 151 7 0 chr6 69697802 69697948 -79819089 - B1_Mm SINE Alu 0 147 1 2 1116 243 391 8 8 chr6 69698102 69698236 -79818801 + MTE-int LTR MaLR 1445 1578 -2 2 1116 3494 195 71 10 chr6 69698746 69699440 -79817597 + Lx4A LINE L1 6323 7058 0 2 1116 276 139 40 40 chr6 69699584 69699659 -79817378 + T-rich Low_complexity Low_complexity 1 75 0 2 1116 1545 226 22 25 chr6 69699845 69700208 -79816829 + ORR1D1 LTR MaLR 3 364 -10 2 1116 313 306 26 51 chr6 69700208 69700325 -79816712 + Lx6 LINE L1 5900 6013 -1447 2 1116 498 286 74 16 chr6 69700462 69700657 -79816380 + RLTR18B LTR ERVK 228 537 -79 2 1116 349 68 13 51 chr6 69701524 69701602 -79815435 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 2 1116 3044 87 0 0 chr6 69701613 69702014 -79815023 - L1_Mus2 LINE L1 -1 6565 6165 2 1116 830 288 44 96 chr6 69702222 69702518 -79814519 - Lx9 LINE L1 -9 7635 7330 2 1116 180 0 0 0 chr6 69702518 69702538 -79814499 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1116 830 288 44 96 chr6 69702538 69702741 -79814296 - Lx9 LINE L1 -315 7329 7162 2 1116 641 26 0 0 chr6 69703735 69703812 -79813225 - L1_Mm LINE L1 -366 5517 5441 2 1116 3991 63 9 4 chr6 69703812 69704338 -79812699 + L1Md_F2 LINE L1 6042 6570 -12 2 1116 243 125 0 0 chr6 69704349 69704389 -79812648 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1116 446 236 8 68 chr6 69704589 69704721 -79812316 - RLTR18-int LTR ERVK -512 4849 4726 2 1116 817 177 138 52 chr6 69704730 69704998 -79812039 - MYSERV6-int LTR ERVK -2247 6712 6422 2 1116 243 0 0 0 chr6 69707078 69707105 -79809932 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1116 216 0 0 0 chr6 69707165 69707189 -79809848 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1116 514 283 66 31 chr6 69707253 69707603 -79809434 + Lx7 LINE L1 5446 5829 -1867 2 1116 198 169 15 30 chr6 69708193 69708260 -79808777 + A-rich Low_complexity Low_complexity 4 69 0 2 1116 3864 189 25 4 chr6 69709046 69709797 -79807240 - L1_Mm LINE L1 0 5883 5117 2 1116 389 102 0 48 chr6 69710011 69710073 -79806964 - L1_Mm LINE L1 -373 5510 5452 2 1116 4770 179 21 11 chr6 69710316 69711277 -79805760 - L1_Mm LINE L1 -768 5115 4146 2 1116 7066 70 4 24 chr6 69711261 69712230 -79804807 - L1Md_F2 LINE L1 0 6582 5633 2 1116 627 125 0 30 chr6 69712233 69712332 -79804705 + L1_Mm LINE L1 5415 5510 -373 2 1116 180 0 0 0 chr6 69712974 69712994 -79804043 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1116 624 319 38 9 chr6 69713147 69713359 -79803678 + ORR1D1 LTR MaLR 149 366 -8 2 1116 553 312 105 41 chr6 69713535 69713887 -79803150 + RLTR18 LTR ERVK 132 616 0 2 1116 375 338 36 43 chr6 69713889 69714028 -79803009 - B3 SINE B2 -74 142 5 2 1116 495 0 0 0 chr6 69714090 69714145 -79802892 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1116 351 0 0 0 chr6 69714145 69714183 -79802854 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1116 244 294 61 7 chr6 69715437 69715566 -79801471 - Lx9 LINE L1 -25 7619 7482 2 1116 405 86 0 0 chr6 69715566 69715624 -79801413 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1116 244 294 61 7 chr6 69715624 69715641 -79801396 - Lx9 LINE L1 -163 7481 7465 2 1116 907 277 73 4 chr6 69715742 69716003 -79801034 - Lx9 LINE L1 -318 7326 7048 2 1116 283 263 21 163 chr6 69717160 69717301 -79799736 - MER70B LTR ERVL -430 148 28 2 1116 930 74 0 123 chr6 69717349 69717503 -79799534 - B1_Mm SINE Alu -12 135 1 2 1116 583 289 158 84 chr6 69718503 69718941 -79798096 + RLTR11A LTR ERVK 19 488 -40 2 1116 3037 98 36 13 chr6 69718947 69719421 -79797616 + L1_Mus3 LINE L1 6147 6631 -7 2 1116 524 200 7 0 chr6 69720001 69720141 -79796896 + (TG)n Simple_repeat Simple_repeat 1 141 0 2 1116 463 213 21 0 chr6 69720627 69720721 -79796316 + Lx4B LINE L1 6823 6918 -140 2 1116 2409 97 6 25 chr6 69721039 69721400 -79795637 + L1_Mus2 LINE L1 6211 6564 -2 2 1116 1232 65 0 0 chr6 69721726 69721921 -79795116 + L1Md_A LINE L1 6415 6582 0 2 1116 833 317 4 16 chr6 69721921 69722168 -79794869 + Lx8 LINE L1 7081 7324 -149 2 1116 613 298 39 10 chr6 69722621 69722828 -79794209 - B3 SINE B2 0 216 4 2 1116 261 0 0 0 chr6 69723043 69723072 -79793965 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2 1116 1757 162 16 19 chr6 69723072 69723393 -79793644 + ORR1B1 LTR MaLR 75 394 0 2 1116 5315 133 63 28 chr6 69723528 69723647 -79793390 - MusHAL1 LINE L1 -309 2403 2294 2 1116 230 0 33 0 chr6 69723647 69723677 -79793360 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1116 5315 133 63 28 chr6 69723677 69724024 -79793013 - MusHAL1 LINE L1 -419 2293 1903 2 1116 250 45 0 43 chr6 69724024 69724070 -79792967 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2 1116 5315 133 63 28 chr6 69724070 69724624 -79792413 - MusHAL1 LINE L1 -810 1902 1347 2 1116 6453 132 28 11 chr6 69727033 69728178 -79788859 - MusHAL1 LINE L1 -727 1985 822 2 1116 6533 115 24 1 chr6 69728173 69729145 -79787892 + L1_Mus3 LINE L1 5645 6638 0 2 1116 1035 115 0 0 chr6 69729151 69729299 -79787738 + B1_Mus1 SINE Alu 1 148 0 2 1116 203 61 30 0 chr6 69729307 69729340 -79787697 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1116 317 276 92 2 chr6 69729549 69729689 -79787348 + L1_Mur3 LINE L1 5526 5659 -632 2 1116 216 232 10 20 chr6 69729725 69729826 -79787211 + CT-rich Low_complexity Low_complexity 1 100 0 2 1116 500 259 38 38 chr6 69729826 69730035 -79787002 - Lx7 LINE L1 0 7696 7488 2 1117 225 253 27 136 chr6 69730430 69730540 -79786497 + MLT1F1 LTR MaLR 111 208 -361 2 1117 34457 76 2 15 chr6 69731747 69737513 -79779524 - L1Md_F2 LINE L1 -338 6244 555 2 1117 1136 182 14 9 chr6 69737513 69737729 -79779308 - RLTR15 LTR ERVK -142 217 1 2 1117 4392 160 32 22 chr6 69738272 69739134 -79777903 - L1_Mur1 LINE L1 -1000 4886 4016 2 1117 583 247 20 81 chr6 69739137 69739419 -79777618 + L1Md_F LINE L1 306 629 -5987 2 1117 272 139 0 0 chr6 69739417 69739460 -79777577 + L1Md_F LINE L1 587 629 -5987 2 1117 258 122 0 0 chr6 69739458 69739499 -79777538 + L1Md_F LINE L1 928 968 -5756 2 1117 25784 50 6 1 chr6 69739481 69742815 -79774222 + L1Md_F LINE L1 1241 4592 -1291 2 1117 261 139 0 0 chr6 69743635 69743678 -79773359 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1117 333 261 76 0 chr6 69744210 69744302 -79772735 + Lx5 LINE L1 6799 6897 -153 2 1117 1920 222 48 35 chr6 69744387 69744845 -79772192 + L1VL4 LINE L1 347 801 -5501 2 1117 411 38 0 0 chr6 69744845 69744898 -79772139 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1117 1920 222 48 35 chr6 69744898 69744975 -79772062 + L1VL4 LINE L1 802 888 -5414 2 1117 9884 167 8 12 chr6 69744950 69746945 -79770092 + L1_Mus4 LINE L1 3991 5975 -661 2 1117 37648 47 1 3 chr6 69746959 69753412 -79763625 - L1Md_T LINE L1 0 6585 49 2 1117 258 235 0 0 chr6 69753422 69753490 -79763547 - L1_Mur3 LINE L1 -3476 2404 2337 2 1117 3626 239 38 22 chr6 69753488 69754820 -79762217 - L1_Mur3 LINE L1 -4232 1648 303 2 1117 296 355 65 65 chr6 69755020 69755204 -79761833 + B3 SINE B2 5 188 -28 2 1117 402 340 65 32 chr6 69755344 69755684 -79761353 + Lx7 LINE L1 5454 5830 -1866 2 1117 24 0 0 0 chr6 69755719 69755743 -79761294 + AT_rich Low_complexity Low_complexity 1 24 0 2 1117 207 0 0 0 chr6 69755837 69755860 -79761177 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1117 180 214 68 51 chr6 69756095 69756154 -79760883 + L3 LINE CR1 1995 2054 -2435 2 1117 554 278 91 64 chr6 69756569 69756899 -79760138 - RLTR12B LTR ERVK -149 379 41 2 1117 1964 226 34 40 chr6 69756921 69757593 -79759444 - L1_Mur3 LINE L1 -2649 3231 2564 2 1117 683 223 19 14 chr6 69757596 69757765 -79759272 + ORR1B1 LTR MaLR 1 174 -185 2 1117 389 229 82 94 chr6 69757919 69758078 -79758959 - RLTR43A LTR ERVK -2 362 206 2 1117 18247 140 8 24 chr6 69758248 69762079 -79754958 + L1Md_F LINE L1 415 4191 -1692 2 1117 6060 122 13 19 chr6 69762074 69762578 -79754459 - L1_Mm LINE L1 -651 5232 4733 2 1117 207 0 0 0 chr6 69762578 69762601 -79754436 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1117 6060 122 13 19 chr6 69762601 69763105 -79753932 - L1_Mm LINE L1 -1151 4732 4231 2 1117 550 180 108 51 chr6 69763108 69763266 -79753771 - Lx LINE L1 -3 6651 6485 2 1117 2870 87 8 0 chr6 69763276 69763669 -79753368 + L1_Mus1 LINE L1 6171 6566 -1 2 1117 205 200 0 0 chr6 69763760 69763800 -79753237 + A-rich Low_complexity Low_complexity 1 40 0 2 1117 401 335 57 39 chr6 69763808 69764038 -79752999 + RLTR18 LTR ERVK 383 616 0 3 1117 390 331 36 36 chr6 69764040 69764178 -79752859 - B3 SINE B2 -74 142 5 3 1117 411 21 0 0 chr6 69764244 69764292 -79752745 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1117 303 122 0 0 chr6 69765669 69765718 -79751319 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1117 1035 274 93 17 chr6 69765764 69766117 -79750920 - Lx9 LINE L1 -217 7427 7048 3 1117 369 341 96 61 chr6 69767104 69767416 -79749621 - MER70B LTR ERVL -228 350 28 3 1117 192 40 0 0 chr6 69767849 69767874 -79749163 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3 1117 814 308 101 48 chr6 69768464 69768901 -79748136 + RLTR20B3 LTR ERVK 22 481 -96 3 1117 3181 98 12 14 chr6 69768930 69769416 -79747621 + L1_Mus3 LINE L1 6147 6631 -7 3 1117 311 217 9 0 chr6 69769994 69770100 -79746937 + (TG)n Simple_repeat Simple_repeat 1 107 0 3 1117 463 213 21 0 chr6 69770597 69770691 -79746346 + Lx4B LINE L1 6823 6918 -140 3 1117 2039 136 44 3 chr6 69771011 69771351 -79745686 + L1_Mus2 LINE L1 6211 6564 -2 3 1117 848 326 22 19 chr6 69771594 69771910 -79745127 + Lx8 LINE L1 7008 7324 -149 3 1117 597 296 58 24 chr6 69772340 69772548 -79744489 - B3 SINE B2 0 216 2 3 1117 432 0 0 0 chr6 69772766 69772814 -79744223 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 3 1117 21 57 0 0 chr6 69773788 69773823 -79743214 + AT_rich Low_complexity Low_complexity 1 35 0 3 1117 6328 135 31 7 chr6 69774635 69775774 -79741263 - MusHAL1 LINE L1 -725 1987 822 3 1117 6546 115 23 1 chr6 69775769 69776742 -79740295 + L1_Mus3 LINE L1 5645 6638 0 3 1117 1021 107 0 26 chr6 69776753 69776906 -79740131 + B1_Mur4 SINE Alu 1 149 -1 3 1117 208 70 0 85 chr6 69776907 69776954 -79740083 + A-rich Low_complexity Low_complexity 3 45 0 3 1117 474 290 26 48 chr6 69777180 69777497 -79739540 + Lx7 LINE L1 5542 5833 -805 3 1117 25 31 0 0 chr6 69777900 69777932 -79739105 + AT_rich Low_complexity Low_complexity 1 32 0 3 1117 335 299 9 0 chr6 69778027 69778134 -79738903 + CT-rich Low_complexity Low_complexity 1 108 0 3 1117 475 271 37 37 chr6 69778134 69778352 -79738685 - Lx7 LINE L1 0 7696 7479 3 1117 250 348 40 16 chr6 69779872 69780123 -79736914 + L1M2a LINE L1 1881 2137 -5031 3 1117 773 101 67 7 chr6 69780285 69780434 -79736603 - L1_Mus2 LINE L1 -4 6634 6477 3 1117 1931 166 8 14 chr6 69781043 69781404 -79735633 - RLTR15 LTR ERVK 0 359 1 3 1117 4583 163 31 22 chr6 69781948 69782857 -79734180 - L1_Mur1 LINE L1 -1000 4886 3970 3 1117 715 168 54 0 chr6 69782882 69783031 -79734006 - L1_Mus2 LINE L1 -1 6565 6409 3 1117 835 138 58 0 chr6 69783033 69783171 -79733866 + B1_Mus1 SINE Alu 3 148 0 3 1117 259 45 22 22 chr6 69783171 69783217 -79733820 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 3 1117 5380 89 7 0 chr6 69783221 69783947 -79733090 - L1_Mus2 LINE L1 -143 6423 5693 3 1117 537 314 86 21 chr6 69783982 69784216 -79732821 + RLTR18 LTR ERVK 366 614 -2 3 1117 492 18 0 0 chr6 69784412 69784469 -79732568 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1117 236 77 26 0 chr6 69785456 69785495 -79731542 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1117 1064 115 0 0 chr6 69785497 69785645 -79731392 - B1_Mus1 SINE Alu 0 148 1 3 1117 789 287 159 10 chr6 69785918 69786025 -79731012 - Lx9 LINE L1 -26 7618 7505 3 1117 321 26 0 0 chr6 69786025 69786063 -79730974 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1117 789 287 159 10 chr6 69786063 69786198 -79730839 - Lx9 LINE L1 -140 7504 7320 3 1117 231 36 0 0 chr6 69786198 69786226 -79730811 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1117 789 287 159 10 chr6 69786226 69786478 -79730559 - Lx9 LINE L1 -325 7319 7052 3 1117 198 0 0 0 chr6 69786616 69786638 -79730399 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3 1117 7333 40 0 1 chr6 69786639 69787512 -79729525 - L1Md_F3 LINE L1 -25 6559 5688 3 1117 15105 117 21 55 chr6 69787500 69790275 -79726762 + L1_Mm LINE L1 3204 5883 0 3 1117 513 84 0 0 chr6 69791103 69791174 -79725863 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1117 321 244 100 0 chr6 69791706 69791796 -79725241 + Lx5 LINE L1 6799 6897 -153 3 1117 1961 215 48 35 chr6 69791854 69792312 -79724725 + L1VL4 LINE L1 347 801 -5501 3 1117 228 86 0 0 chr6 69792312 69792347 -79724690 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1117 1961 215 48 35 chr6 69792347 69792424 -79724613 + L1VL4 LINE L1 802 888 -5414 3 1117 9798 168 8 15 chr6 69792399 69794401 -79722636 + L1_Mus4 LINE L1 3991 5975 -661 3 1117 250 235 0 0 chr6 69794405 69794473 -79722564 - L1_Mur3 LINE L1 -3476 2404 2337 3 1117 3608 249 30 20 chr6 69794471 69795809 -79721228 - L1_Mur3 LINE L1 -4232 1648 303 3 1117 443 299 113 83 chr6 69796010 69796214 -79720823 + B3 SINE B2 5 214 -2 3 1117 325 349 71 32 chr6 69796335 69796673 -79720364 + Lx7 LINE L1 5454 5835 -1861 3 1117 26 30 0 0 chr6 69796701 69796734 -79720303 + AT_rich Low_complexity Low_complexity 1 33 0 3 1117 636 276 57 47 chr6 69797581 69797881 -79719156 - RLTR12B LTR ERVK -196 332 30 3 1117 503 198 62 57 chr6 69797891 69798100 -79718937 - L1_Mur3 LINE L1 -2649 3231 3022 3 1117 2064 92 10 19 chr6 69798116 69798426 -79718611 - IAPLTR2b LTR ERVK -20 307 1 3 1117 4339 86 44 26 chr6 69798428 69799083 -79717954 - IAPEz-int LTR ERVK -2 6479 5813 3 1117 9005 59 4 0 chr6 69799081 69800186 -79716851 - IAPEz-int LTR ERVK -1057 5424 4316 3 1117 5524 48 89 2 chr6 69800166 69801141 -79715896 - IAPEz-int LTR ERVK -2277 4204 3145 3 1117 1061 122 26 0 chr6 69801117 69801273 -79715764 - IAPEz-int LTR ERVK -3486 2995 2836 3 1117 2025 206 25 7 chr6 69801273 69801714 -79715323 - Lx2 LINE L1 -723 6274 5826 3 1117 2548 174 11 2 chr6 69801713 69802185 -79714852 + Lx2 LINE L1 5312 5787 -96 3 1117 9666 203 87 40 chr6 69802212 69805794 -79711243 + L1Md_F LINE L1 404 4186 -1694 3 1117 6298 121 3 40 chr6 69805789 69806831 -79710206 - L1_Mm LINE L1 -651 5232 4230 3 1117 568 190 116 27 chr6 69806833 69806979 -79710058 - Lx LINE L1 -2 6652 6494 3 1117 2936 70 5 0 chr6 69807012 69807395 -79709642 + L1_Mus1 LINE L1 6183 6567 0 3 1117 541 100 11 11 chr6 69807487 69807578 -79709459 + (GAAAA)n Simple_repeat Simple_repeat 2 92 0 3 1117 369 366 54 13 chr6 69807584 69807808 -79709229 + RLTR18 LTR ERVK 383 615 -1 3 1117 396 321 35 42 chr6 69807808 69807950 -79709087 - B3 SINE B2 -71 145 5 3 1117 573 15 0 0 chr6 69808016 69808082 -79708955 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1117 248 246 0 0 chr6 69809267 69809332 -79707705 + T-rich Low_complexity Low_complexity 1 65 0 3 1117 1184 307 66 15 chr6 69809344 69809889 -79707148 - Lx9 LINE L1 -24 7620 7048 3 1117 393 338 94 50 chr6 69810881 69811180 -79705857 - MER70B LTR ERVL -239 339 28 3 1117 632 302 95 84 chr6 69812285 69812748 -79704289 + RLTR11A LTR ERVK 19 486 -42 3 1117 3104 96 12 42 chr6 69812756 69813256 -79703781 + L1_Mus3 LINE L1 6147 6631 -7 3 1117 498 17 0 0 chr6 69813838 69813897 -79703140 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1117 420 271 0 0 chr6 69814404 69814500 -79702537 + Lx5 LINE L1 6800 6895 -155 3 1117 2256 119 8 25 chr6 69814818 69815180 -79701857 + L1_Mus2 LINE L1 6211 6566 0 3 1117 23 78 0 0 chr6 69815357 69815408 -79701629 + AT_rich Low_complexity Low_complexity 1 51 0 3 1117 968 306 22 19 chr6 69815424 69815740 -79701297 + Lx8 LINE L1 7008 7324 -149 3 1117 733 292 44 5 chr6 69816174 69816377 -79700660 - B3 SINE B2 0 216 6 3 1117 423 0 0 0 chr6 69816597 69816644 -79700393 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 3 1117 1546 205 13 19 chr6 69816644 69816964 -79700073 + ORR1B1 LTR MaLR 77 380 -14 3 1117 4314 190 5 103 chr6 69817104 69818236 -79698801 - L1_Mur1 LINE L1 -2294 3592 2572 3 1117 1192 118 75 0 chr6 69818236 69818448 -79698589 - MusHAL1 LINE L1 -1137 1575 1348 3 1117 521 342 114 20 chr6 69819851 69820149 -79696888 + Lx7 LINE L1 6584 6909 -787 3 1117 2150 95 46 34 chr6 69820154 69820480 -79696557 - L1Md_F2 LINE L1 -23 6559 6230 3 1117 8697 156 6 19 chr6 69820481 69822235 -79694802 + L1_Mus4 LINE L1 4253 5978 -658 3 1117 320 145 0 31 chr6 69822230 69822294 -79694743 - MusHAL1 LINE L1 -1510 1202 1141 3 1117 3621 242 35 20 chr6 69822303 69823635 -79693402 - L1_Mur3 LINE L1 -4231 1649 303 3 1117 631 302 0 71 chr6 69823838 69824034 -79693003 + B3 SINE B2 5 186 -30 3 1117 461 323 84 30 chr6 69824179 69824514 -79692523 + Lx7 LINE L1 5515 5867 -436 3 1117 27 29 0 0 chr6 69824543 69824577 -79692460 + AT_rich Low_complexity Low_complexity 1 34 0 3 1117 528 16 0 0 chr6 69824669 69824730 -79692307 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1117 8525 134 3 15 chr6 69825614 69827050 -79689987 + L1_Mm LINE L1 2769 4186 -1697 3 1117 5271 113 5 10 chr6 69827047 69827350 -79689687 - L1_Mm LINE L1 -651 5232 4935 3 1117 3510 65 36 2 chr6 69827350 69827816 -79689221 - RLTR45 LTR ERVK 0 482 1 3 1117 5271 113 5 10 chr6 69827816 69828313 -79688724 - L1_Mm LINE L1 -949 4934 4436 3 1117 629 90 0 20 chr6 69828313 69828415 -79688622 + L1_Mus1 LINE L1 6467 6566 -1 3 1117 351 65 0 0 chr6 69828513 69828559 -79688478 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 3 1117 401 332 125 0 chr6 69828576 69828784 -79688253 + RLTR18 LTR ERVK 383 616 0 3 1117 399 351 29 29 chr6 69828786 69828924 -79688113 - B3 SINE B2 -74 142 5 3 1117 1290 308 51 12 chr6 69830249 69830817 -79686220 - Lx9 LINE L1 -7 7637 7048 3 1117 456 313 73 39 chr6 69830855 69831061 -79685976 - B3 SINE B2 0 216 4 3 1117 1610 122 28 28 chr6 69831296 69831584 -79685453 - RLTR9E LTR ERVK -121 288 1 3 1117 300 27 0 0 chr6 69831588 69831625 -79685412 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 3 1117 2857 104 17 5 chr6 69831631 69832047 -79684990 - BGLII LTR ERVK 0 421 1 3 1117 1919 188 80 8 chr6 69832095 69832620 -79684417 - MYSERV16_I-int LTR ERVK -64 2262 1700 3 1117 1470 176 11 18 chr6 69832629 69832901 -79684136 + ORR1B1 LTR MaLR 84 353 -41 3 1117 7766 82 27 21 chr6 69832901 69834015 -79683022 - L1_Mm LINE L1 -78 5805 4685 4 1117 4402 90 10 2 chr6 69834017 69834628 -79682409 + L1Md_F2 LINE L1 5963 6578 -4 4 1117 315 133 0 0 chr6 69834628 69834673 -79682364 + ORR1A4 LTR MaLR 276 320 -9 4 1117 3977 119 26 1 chr6 69834800 69835449 -79681588 - MusHAL1 LINE L1 -296 2416 1752 4 1117 4949 89 19 7 chr6 69835448 69836170 -79680867 - L1_Mur1 LINE L1 -230 5656 4926 4 1117 4853 113 13 31 chr6 69836170 69836952 -79680085 + Lx3_Mus LINE L1 5936 6703 -306 4 1117 668 218 139 20 chr6 69837865 69838066 -79678971 - URR1A DNA MER1_type -1 225 1 4 1117 720 159 0 0 chr6 69839058 69839215 -79677822 + CT-rich Low_complexity Low_complexity 1 157 0 4 1117 234 245 0 0 chr6 69839215 69839264 -79677773 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1117 234 174 0 0 chr6 69840611 69840657 -79676380 + CT-rich Low_complexity Low_complexity 1 46 0 4 1117 1460 267 48 8 chr6 69840780 69841176 -79675861 + MTC LTR MaLR 1 412 -9 4 1117 4001 110 16 0 chr6 69841338 69841973 -79675064 + L1_Mur1 LINE L1 3180 3824 -2062 4 1117 321 311 48 82 chr6 69842156 69842303 -79674734 + B1_Mur1 SINE Alu 8 149 0 4 1117 606 305 65 0 chr6 69844259 69844459 -79672578 + Lx8 LINE L1 6432 6644 -829 4 1117 24 0 0 0 chr6 69844620 69844644 -79672393 + AT_rich Low_complexity Low_complexity 1 24 0 4 1117 1171 297 72 19 chr6 69844644 69845182 -79671855 - Lx7 LINE L1 0 7696 7130 4 1117 1256 231 73 15 chr6 69845206 69845535 -79671502 + L1_Mur3 LINE L1 5424 5771 -109 4 1117 21 0 0 0 chr6 69846058 69846079 -79670958 + AT_rich Low_complexity Low_complexity 1 21 0 4 1117 1194 42 0 0 chr6 69846139 69846282 -79670755 + B1_Mm SINE Alu 3 145 -2 4 1117 222 0 25 50 chr6 69846282 69846322 -79670715 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1117 236 406 66 62 chr6 69846325 69846551 -79670486 + B4A SINE B4 43 269 -23 4 1117 210 37 0 0 chr6 69846731 69846758 -79670279 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1117 8132 152 25 9 chr6 69846792 69847621 -79669416 - Lx2 LINE L1 0 6997 6150 4 1117 2733 152 9 20 chr6 69847621 69848072 -79668965 + RLTR41 LTR ERV1 1 446 0 4 1117 8132 154 16 8 chr6 69848072 69848952 -79668085 - Lx2 LINE L1 -848 6149 5266 4 1117 557 91 0 0 chr6 69848952 69849029 -79668008 + MusHAL1 LINE L1 1970 2046 -666 4 1117 448 324 42 0 chr6 69849032 69849174 -79667863 - B1F2 SINE Alu 0 149 2 4 1117 1741 82 4 0 chr6 69849194 69849427 -79667610 - L1_Mus1 LINE L1 -1 6566 6333 4 1117 185 327 0 0 chr6 69850017 69850072 -79666965 + MIR3 SINE MIR 111 165 -43 4 1117 25 0 0 0 chr6 69850866 69850891 -79666146 + AT_rich Low_complexity Low_complexity 1 25 0 4 1117 4014 90 36 18 chr6 69851336 69851948 -79665089 - L1_Mus3 LINE L1 -10 6628 6006 4 1117 774 285 46 23 chr6 69852504 69852849 -79664188 + L1_Rod LINE L1 5444 5796 -51 4 1117 32 67 0 0 chr6 69853244 69853304 -79663733 + AT_rich Low_complexity Low_complexity 1 60 0 4 1117 667 128 0 72 chr6 69853435 69853629 -79663408 + CT-rich Low_complexity Low_complexity 1 180 0 4 1117 977 219 21 94 chr6 69853637 69853965 -79663072 - Lx6 LINE L1 0 7696 7393 4 1117 36 40 0 0 chr6 69854092 69854142 -79662895 + AT_rich Low_complexity Low_complexity 1 50 0 4 1117 3215 264 34 54 chr6 69854261 69855526 -79661511 - Lx6 LINE L1 -475 7221 5994 4 1117 9948 210 38 41 chr6 69855525 69858267 -79658770 - L1_Mur3 LINE L1 -1911 3969 1237 4 1117 229 217 0 62 chr6 69858260 69858324 -79658713 + Lx2B LINE L1 6678 6737 -263 4 1117 517 118 35 0 chr6 69858333 69858418 -79658619 - L1_Mur3 LINE L1 -7575 153 66 4 1117 203 79 26 0 chr6 69858489 69858527 -79658510 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 4 1117 2460 215 42 40 chr6 69858584 69859204 -79657833 + Lx2B LINE L1 6380 7000 0 4 1117 24 0 0 0 chr6 69859204 69859228 -79657809 + AT_rich Low_complexity Low_complexity 1 24 0 4 1117 538 273 9 185 chr6 69859319 69859535 -79657502 + B3A SINE B2 9 186 -9 4 1117 764 312 37 28 chr6 69859609 69860091 -79656946 + Lx7 LINE L1 5432 5926 -1770 4 1117 211 259 0 0 chr6 69860094 69860148 -79656889 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1117 234 0 0 0 chr6 69860327 69860353 -79656684 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1117 258 95 0 0 chr6 69861146 69861188 -79655849 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 4 139 2906 82 39 5 chr6 69861215 69861622 -79655415 - BGLII LTR ERVK 0 421 1 4 1118 3146 215 41 46 chr6 69861623 69862707 -79654330 - RMER3D-int LTR ERVK -1 2841 1532 4 1118 2055 157 124 17 chr6 69862750 69863219 -79653818 - RMER3D-int LTR ERVK -1309 1533 1015 4 1118 645 148 42 7 chr6 69863265 69863408 -79653629 + CT-rich Low_complexity Low_complexity 3 150 0 4 1118 474 166 0 14 chr6 69863408 69863529 -79653508 - RMER3D-int LTR ERVK -2278 564 489 4 1118 661 202 55 30 chr6 69863661 69863860 -79653177 - RMER3D-int LTR ERVK -1990 852 649 4 1118 516 136 0 0 chr6 69863872 69863960 -79653077 - RMER3D-int LTR ERVK -2278 564 489 4 1118 678 131 0 18 chr6 69864370 69864479 -79652558 - BGLII_Mus LTR ERVK 0 422 316 4 1118 12052 114 71 20 chr6 69865532 69865871 -79651166 + ETnERV3-int LTR ERVK 3641 3976 -1832 4 1118 240 35 0 0 chr6 69865871 69865900 -79651137 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 4 1118 12052 114 71 20 chr6 69865900 69867600 -79649437 + ETnERV3-int LTR ERVK 3977 5783 -25 4 1118 7237 23 0 0 chr6 69867610 69868432 -79648605 + RLTR13B2 LTR ERVK 1 822 0 4 1118 1085 96 0 0 chr6 69869504 69869650 -79647387 - B1_Mus2 SINE Alu 0 147 2 4 1118 438 267 135 31 chr6 69869751 69869944 -79647093 - B3 SINE B2 -3 213 1 4 1118 237 281 68 34 chr6 69870575 69870693 -79646344 - L1M2 LINE L1 -3384 2759 2638 4 1118 429 105 35 0 chr6 69871265 69871351 -79645686 + (GA)n Simple_repeat Simple_repeat 2 90 0 4 1118 189 0 0 0 chr6 69871547 69871568 -79645469 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1118 234 340 16 11 chr6 69872513 69872703 -79644334 + L1M2a LINE L1 1942 2132 -5036 4 1118 1884 144 25 25 chr6 69872909 69873266 -79643771 - RLTR15 LTR ERVK 0 359 3 4 1118 309 26 0 0 chr6 69873850 69873888 -79643149 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 4 1118 568 158 0 17 chr6 69874048 69874164 -79642873 + G-rich Low_complexity Low_complexity 6 119 0 4 1118 1068 200 79 28 chr6 69874172 69874424 -79642613 - RMER10B LTR ERVL -133 265 1 4 1118 789 215 31 13 chr6 69874572 69874798 -79642239 - L1_Mur3 LINE L1 -1545 4335 4106 4 1118 270 0 0 0 chr6 69874812 69874842 -79642195 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1118 7427 76 0 10 chr6 69874914 69875957 -79641080 + L1_Mus1 LINE L1 5534 6567 0 4 1118 21 0 0 0 chr6 69875958 69875979 -79641058 + AT_rich Low_complexity Low_complexity 1 21 0 4 1118 4237 222 33 28 chr6 69875979 69877050 -79639987 + Lx2B LINE L1 5782 6857 -143 4 1118 303 384 53 9 chr6 69877169 69877282 -79639755 + RSINE1 SINE B4 27 144 -21 4 1118 10292 92 10 2 chr6 69879489 69881586 -79635451 - L1Md_F2 LINE L1 0 6582 4468 4 1118 5651 88 0 0 chr6 69881564 69882357 -79634680 - L1Md_F2 LINE L1 -2806 3077 2285 4 1118 3928 193 1 26 chr6 69882769 69883502 -79633535 + Lx4A LINE L1 6315 7029 -29 4 1118 35 0 0 0 chr6 69883509 69883544 -79633493 + AT_rich Low_complexity Low_complexity 1 35 0 4 1118 1417 262 13 48 chr6 69883868 69884224 -79632813 + ORR1D1 LTR MaLR 3 347 -27 4 1118 3026 34 0 3 chr6 69884224 69884579 -79632458 - IAPEY2_LTR LTR ERVK -3 354 1 4 1118 1417 262 13 48 chr6 69884579 69884599 -79632438 + ORR1D1 LTR MaLR 348 366 -8 4 1118 4204 266 43 36 chr6 69884600 69885845 -79631192 + Lx6 LINE L1 5903 7156 -304 4 1118 22 0 0 0 chr6 69886083 69886105 -79630932 + AT_rich Low_complexity Low_complexity 1 22 0 4 1118 2279 196 13 19 chr6 69886105 69886572 -79630465 - Lx4B LINE L1 -2 7056 6593 4 1118 288 27 0 0 chr6 69886572 69886609 -79630428 + Lx5 LINE L1 5726 5762 -1288 4 1118 1229 212 60 12 chr6 69886610 69886858 -79630179 - RMER13A LTR ERVK 0 860 601 4 1118 1965 137 70 14 chr6 69887148 69887503 -79629534 - Lx3_Mus LINE L1 0 6654 6280 4 1118 3127 165 49 12 chr6 69887505 69888093 -79628944 + Lx4B LINE L1 5875 6484 -574 4 1118 21 36 0 0 chr6 69888489 69888517 -79628520 + AT_rich Low_complexity Low_complexity 1 28 0 4 1118 4730 83 26 17 chr6 69888589 69889435 -79627602 - Lx3_Mus LINE L1 -881 6128 5289 4 1118 4156 76 22 0 chr6 69889435 69889985 -79627052 - L1_Mus1 LINE L1 0 6567 6006 4 1118 405 0 0 0 chr6 69889985 69890030 -79627007 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4 1118 4730 75 36 15 chr6 69890030 69890103 -79626934 - Lx3_Mus LINE L1 -598 5288 5201 4 1118 4513 128 107 12 chr6 69890104 69890870 -79626167 + Lx3_Mus LINE L1 6153 6991 -18 4 1118 34 42 0 0 chr6 69890871 69890919 -79626118 + AT_rich Low_complexity Low_complexity 1 48 0 4 1118 642 256 22 0 chr6 69890927 69891064 -79625973 + B1_Mus1 SINE Alu 3 142 -6 4 1118 630 113 0 0 chr6 69891109 69891215 -79625822 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 1118 783 276 61 5 chr6 69891255 69891452 -79625585 + ID_B1 SINE B4 15 222 -2 4 1118 659 237 0 0 chr6 69891917 69892035 -79625002 + B3 SINE B2 1 118 -98 4 1118 781 296 98 15 chr6 69892224 69892575 -79624462 + RLTR18 LTR ERVK 120 616 0 4 1118 412 289 32 17 chr6 69892580 69892715 -79624322 - B3 SINE B2 -77 139 9 4 1118 525 44 0 0 chr6 69892773 69892841 -79624196 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1118 1749 275 44 7 chr6 69894072 69894622 -79622415 - Lx9 LINE L1 -7 7637 7068 4 1118 227 79 26 0 chr6 69894622 69894660 -79622377 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 4 1118 4860 131 63 7 chr6 69894666 69895474 -79621563 - Lx3A LINE L1 -5 6976 6124 4 1118 5655 118 19 8 chr6 69895474 69895519 -79621518 - L1_Mur1 LINE L1 -1709 4177 4123 4 1118 225 0 0 0 chr6 69895519 69895544 -79621493 + (TTG)n Simple_repeat Simple_repeat 3 27 0 4 1118 5655 118 19 8 chr6 69895544 69896432 -79620605 - L1_Mur1 LINE L1 -1764 4122 3233 4 1118 1082 109 0 0 chr6 69897320 69897467 -79619570 + B1_Mus2 SINE Alu 1 147 0 4 1118 2688 218 77 22 chr6 69897605 69898502 -79618535 + L1Md_F LINE L1 229 1098 -5439 4 1118 431 288 18 18 chr6 69898497 69898660 -79618377 + L1VL2 LINE L1 31 193 -6142 4 1118 21316 117 19 17 chr6 69898729 69899889 -79617148 + L1_Mm LINE L1 1204 2352 -3531 5 1118 198 0 0 0 chr6 69899889 69899911 -79617126 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 5 1118 21316 117 19 17 chr6 69899911 69902285 -79614752 + L1_Mm LINE L1 2353 4745 -1138 5 1118 7600 22 17 0 chr6 69902276 69902511 -79614526 + L1Md_T LINE L1 232 466 -6056 5 1118 192 40 0 0 chr6 69902511 69902536 -79614501 + (CAG)n Simple_repeat Simple_repeat 1 25 0 5 1118 35206 41 2 0 chr6 69902536 69907546 -79609491 + L1Md_T LINE L1 467 5589 -297 5 1118 8770 18 0 0 chr6 69907546 69908542 -79608495 + L1Md_T LINE L1 5590 6585 0 5 1118 3547 140 0 0 chr6 69908542 69909100 -79607937 + L1_Mm LINE L1 4735 5292 -591 5 1118 13937 89 7 1 chr6 69909104 69910360 -79606677 - L1Md_F LINE L1 -2654 3229 1962 5 1118 219 88 0 0 chr6 69910360 69910394 -79606643 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1118 13937 158 68 17 chr6 69910394 69912083 -79604954 - L1Md_F LINE L1 -3922 1961 218 5 1118 456 270 19 19 chr6 69912100 69912255 -79604782 - MYSERV6-int LTR ERVK -2247 6712 6558 5 1118 180 0 0 0 chr6 69912262 69912282 -79604755 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1118 270 81 0 0 chr6 69912331 69912368 -79604669 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1118 238 286 0 0 chr6 69912577 69912633 -79604404 - B4 SINE B4 -142 150 95 5 1118 7266 107 10 2 chr6 69914622 69915710 -79601327 + L1_Mus3 LINE L1 5541 6637 -1 5 1118 43 56 0 0 chr6 69915762 69915833 -79601204 + AT_rich Low_complexity Low_complexity 1 71 0 5 1118 3899 255 71 21 chr6 69915933 69916381 -79600656 - Lx7 LINE L1 -475 7221 6752 5 1118 293 0 27 0 chr6 69916381 69916418 -79600619 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1118 3899 255 71 21 chr6 69916418 69917135 -79599902 - Lx7 LINE L1 -945 6751 5997 5 1118 2131 234 16 26 chr6 69917138 69917703 -79599334 - L1_Mur3 LINE L1 -1913 3967 3409 5 1118 1411 188 65 53 chr6 69917710 69918081 -79598956 - L1_Mur3 LINE L1 -2922 2958 2578 5 1118 2787 88 24 10 chr6 69918081 69918496 -79598541 + BGLII LTR ERVK 1 421 0 5 1118 1411 188 65 53 chr6 69918496 69918522 -79598515 - L1_Mur3 LINE L1 -3303 2577 2556 5 1118 2803 230 65 33 chr6 69918517 69919311 -79597726 - L1_Mur3 LINE L1 -6606 1122 303 5 1118 564 282 74 48 chr6 69919310 69919619 -79597418 + Lx7 LINE L1 5593 5936 -361 5 1118 360 0 0 0 chr6 69919647 69919687 -79597350 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1118 23 33 0 0 chr6 69919724 69919754 -79597283 + AT_rich Low_complexity Low_complexity 1 30 0 5 1118 21 0 0 0 chr6 69919787 69919808 -79597229 + AT_rich Low_complexity Low_complexity 1 21 0 5 1118 261 0 0 0 chr6 69920702 69920731 -79596306 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1118 4073 42 38 10 chr6 69921705 69922227 -79594810 + L1Md_F2 LINE L1 6045 6581 -1 5 1118 259 271 58 12 chr6 69922717 69922803 -79594234 - B3 SINE B2 -125 91 2 5 1118 250 254 15 0 chr6 69923096 69923163 -79593874 + L1MA10 LINE L1 6260 6327 -7 5 1118 25 83 0 0 chr6 69923623 69923683 -79593354 + AT_rich Low_complexity Low_complexity 1 60 0 5 1118 5257 221 57 26 chr6 69923778 69924582 -79592455 - L1_Mur3 LINE L1 -3078 2802 1981 5 1118 1737 32 5 13 chr6 69924582 69924806 -79592231 - L1Md_F3 LINE L1 -6 6578 6357 5 1118 5257 220 51 25 chr6 69924806 69925586 -79591451 - L1_Mur3 LINE L1 -3900 1980 1167 5 1118 21 0 0 0 chr6 69925701 69925722 -79591315 + AT_rich Low_complexity Low_complexity 1 21 0 5 1118 952 126 16 7 chr6 69925990 69926158 -79590879 - Lx2 LINE L1 -2072 5810 5610 5 1118 7480 136 34 1 chr6 69926158 69927366 -79589671 + Lx2 LINE L1 5748 6995 -2 5 1118 1113 84 0 0 chr6 69927373 69927527 -79589510 + (GAAA)n Simple_repeat Simple_repeat 1 154 0 5 1118 396 303 77 63 chr6 69928327 69928549 -79588488 - RMER2 LTR ERV1 -14 553 329 5 1118 1175 287 38 3 chr6 69928957 69929297 -79587740 + RMER19B LTR ERVK 1 383 -354 5 1118 241 93 0 36 chr6 69929297 69929353 -79587684 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 1118 8083 39 3 2 chr6 69929438 69930418 -79586619 - L1Md_F2 LINE L1 -15 6567 5587 5 1118 3239 36 0 0 chr6 69930422 69930808 -79586229 + L1Md_F2 LINE L1 5221 5606 -277 5 1118 1092 159 6 22 chr6 69930808 69930988 -79586049 + RMER19B LTR ERVK 258 434 -468 5 1118 309 352 54 67 chr6 69931219 69931358 -79585679 - Lx9 LINE L1 0 7473 7332 5 1118 564 15 0 0 chr6 69931358 69931423 -79585614 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 1118 540 319 63 8 chr6 69931423 69931655 -79585382 - Lx9 LINE L1 -176 7468 7107 5 1118 576 0 0 0 chr6 69932625 69932689 -79584348 + (GAAA)n Simple_repeat Simple_repeat 4 67 0 5 1118 555 56 0 0 chr6 69933127 69933198 -79583839 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1118 417 20 0 0 chr6 69933351 69933401 -79583636 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1118 1382 203 180 31 chr6 69933673 69934029 -79583008 - MTD LTR MaLR -8 411 3 5 1118 226 269 105 21 chr6 69934041 69934136 -79582901 - Looper DNA PiggyBac -338 1220 1118 5 1118 486 289 70 0 chr6 69934551 69934693 -79582344 + MTD LTR MaLR 3 154 -265 5 1118 3047 268 24 14 chr6 69934713 69935545 -79581492 - Lx7 LINE L1 -647 7049 6210 5 1118 423 0 0 0 chr6 69935559 69935606 -79581431 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1118 350 260 60 83 chr6 69935886 69936054 -79580983 - RLTR40 LTR ERVK -635 182 19 5 1118 314 279 0 0 chr6 69936784 69936870 -79580167 + Lx9 LINE L1 7381 7466 -178 5 1118 658 317 79 21 chr6 69937812 69938086 -79578951 + MTE-int LTR MaLR 1240 1530 -50 5 1118 476 331 27 37 chr6 69938086 69938274 -79578763 + ORR1E LTR MaLR 4 189 -170 5 1118 13284 97 16 1 chr6 69938356 69940324 -79576713 + L1_Mm LINE L1 3096 5092 -791 5 1118 2032 250 7 14 chr6 69940414 69940848 -79576189 + Lx5 LINE L1 6468 6898 -152 5 1118 1275 178 58 4 chr6 69940835 69941078 -79575959 + Lx5 LINE L1 6466 6721 -329 5 1118 26 0 0 0 chr6 69941139 69941165 -79575872 + AT_rich Low_complexity Low_complexity 1 26 0 5 1118 737 284 33 14 chr6 69941255 69941466 -79575571 - Lx8 LINE L1 -240 7233 7019 5 1118 516 265 8 33 chr6 69941542 69941663 -79575374 - B1_Mur2 SINE Alu -1 148 31 5 1118 1106 220 114 3 chr6 69941880 69942187 -79574850 + ORR1C2 LTR MaLR 24 384 0 5 1118 180 0 0 0 chr6 69943612 69943632 -79573405 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1118 1868 252 51 44 chr6 69943752 69944458 -79572579 - MYSERV-int LTR ERVK -1811 4739 4029 5 1118 315 0 0 0 chr6 69944459 69944494 -79572543 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1118 33 43 0 0 chr6 69945641 69945688 -79571349 + AT_rich Low_complexity Low_complexity 1 47 0 5 1118 4442 197 38 13 chr6 69945853 69947198 -79569839 - Lx5 LINE L1 -407 6643 5257 5 1118 16196 183 24 53 chr6 69947612 69950220 -79566817 - Lx5 LINE L1 -613 5264 2701 5 1118 3526 23 0 0 chr6 69950220 69950616 -79566421 - MTA_Mm LTR MaLR 0 396 1 5 1118 9226 31 3 1 chr6 69950616 69951712 -79565325 - MTA_Mm-int LTR MaLR 0 1098 1 5 1118 3526 23 0 0 chr6 69951712 69952108 -79564929 - MTA_Mm LTR MaLR 0 396 1 5 1118 16196 183 24 53 chr6 69952108 69953539 -79563498 - Lx5 LINE L1 -3177 2700 1343 5 1118 2288 176 2 27 chr6 69953538 69954059 -79562978 - L1_Mur2 LINE L1 -3346 2531 2024 5 1118 1969 168 27 34 chr6 69954054 69954725 -79562312 + L1_Mur2 LINE L1 5237 5702 -175 5 1118 2991 73 2 8 chr6 69954730 69955128 -79561909 + MTA_Mm LTR MaLR 1 396 0 5 1118 2219 92 0 24 chr6 69955128 69955240 -79561797 + MTA_Mm-int LTR MaLR 1 107 -991 5 1118 1571 32 11 0 chr6 69955240 69955429 -79561608 + B2_Mm1a SINE B2 1 191 -2 5 1118 2219 92 0 24 chr6 69955429 69955649 -79561388 + MTA_Mm-int LTR MaLR 108 325 -773 5 1118 22926 88 4 3 chr6 69955649 69958318 -79558719 - L1Md_F LINE L1 -1238 4645 1967 5 1118 252 0 0 0 chr6 69958318 69958346 -79558691 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1118 22926 88 4 3 chr6 69958346 69958580 -79558457 - L1Md_F LINE L1 -3917 1966 1739 5 1118 2620 43 9 30 chr6 69958580 69958914 -79558123 - IAPLTR2b LTR ERVK 0 327 1 5 1118 22926 148 23 35 chr6 69958914 69960467 -79556570 - L1Md_F LINE L1 -4145 1738 198 5 1118 24 53 0 0 chr6 69960500 69960538 -79556499 + AT_rich Low_complexity Low_complexity 1 38 0 5 1118 1046 101 0 13 chr6 69962106 69962256 -79554781 - B1_Mus1 SINE Alu 0 148 1 5 1118 444 135 0 0 chr6 69962283 69962357 -79554680 + (GGGAGA)n Simple_repeat Simple_repeat 3 76 0 5 1118 21 0 0 0 chr6 69962400 69962421 -79554616 + AT_rich Low_complexity Low_complexity 1 21 0 5 1118 264 120 0 0 chr6 69963096 69963146 -79553891 + (A)n Simple_repeat Simple_repeat 1 50 0 5 1118 855 228 59 4 chr6 69963236 69963474 -79553563 - L1_Mur3 LINE L1 -1545 4335 4085 5 1118 2009 188 12 5 chr6 69963470 69963893 -79553144 - L1_Mur2 LINE L1 -1012 4865 4440 5 1118 36123 50 0 3 chr6 69963888 69970380 -79546657 - L1Md_T LINE L1 0 6585 14 5 1118 3219 171 43 10 chr6 69970377 69970479 -79546558 - L1_Mur2 LINE L1 -1423 4454 4349 5 1118 1516 183 64 64 chr6 69970479 69970569 -79546468 + RMER17C LTR ERVK 1 90 -320 5 1118 432 0 0 0 chr6 69970569 69970617 -79546420 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 1118 1516 183 64 64 chr6 69970617 69970705 -79546332 + RMER17C LTR ERVK 91 186 -224 5 1118 753 76 0 0 chr6 69970705 69970810 -79546227 + (TC)n Simple_repeat Simple_repeat 1 105 0 5 1118 1516 183 64 64 chr6 69970810 69971039 -79545998 + RMER17C LTR ERVK 187 408 -2 5 1118 3219 171 43 10 chr6 69971039 69971633 -79545404 - L1_Mur2 LINE L1 -1529 4348 3735 5 1118 7422 147 20 23 chr6 69971632 69973043 -79543994 + Lx2 LINE L1 5540 6951 -46 5 1118 2828 64 0 0 chr6 69974017 69974363 -79542674 - ORR1A1 LTR MaLR 0 346 1 5 1118 508 232 182 24 chr6 69974519 69974824 -79542213 - Lx4A LINE L1 0 7050 6696 5 1118 3851 192 115 34 chr6 69974932 69976056 -79540981 - RMER12 LTR ERVK -107 1215 1 5 1118 499 250 158 0 chr6 69976369 69976533 -79540504 - ORR1D2 LTR MaLR 0 370 181 5 1118 422 304 0 18 chr6 69976559 69976673 -79540364 - B3 SINE B2 -104 112 1 5 1118 310 333 0 9 chr6 69976758 69976864 -79540173 + CT-rich Low_complexity Low_complexity 3 107 0 5 1118 525 292 41 7 chr6 69977754 69977899 -79539138 + ETnERV2-int LTR ERVK 7053 7202 -204 5 1118 26 30 0 0 chr6 69978367 69978400 -79538637 + AT_rich Low_complexity Low_complexity 1 33 0 5 1118 7819 37 4 5 chr6 69978444 69979552 -79537485 - L1Md_F3 LINE L1 -3 6581 5475 5 1118 430 38 0 0 chr6 69979550 69979603 -79537434 + L1_Mm LINE L1 4384 4436 -1447 5 1118 5630 23 0 0 chr6 69979598 69980302 -79536735 - L1Md_F3 LINE L1 -2269 3614 2911 5 1118 2701 19 0 0 chr6 69980298 69980621 -79536416 + L1Md_A LINE L1 5264 5586 -297 5 1118 8517 27 1 0 chr6 69980621 69981615 -79535422 + L1Md_A LINE L1 5587 6581 -1 5 1118 213 39 0 0 chr6 69981624 69981650 -79535387 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1118 7930 49 3 1 chr6 69981767 69982810 -79534227 + L1_Mm LINE L1 4430 5474 -409 5 1118 207 217 0 21 chr6 69983714 69983761 -79533276 + CT-rich Low_complexity Low_complexity 3 48 0 5 1118 471 269 9 19 chr6 69983761 69983867 -79533170 - B3 SINE B2 -98 118 14 5 1118 323 280 32 0 chr6 69983864 69983957 -79533080 + B3 SINE B2 120 215 -1 5 1118 245 364 9 9 chr6 69983961 69984072 -79532965 + MLT1D LTR MaLR 343 453 -52 5 1118 531 240 109 23 chr6 69984695 69984823 -79532214 + B1F2 SINE Alu 1 139 -8 5 1118 206 250 53 0 chr6 69985459 69985591 -79531446 + GA-rich Low_complexity Low_complexity 4 142 0 5 1118 2666 262 77 6 chr6 69986030 69986875 -79530162 + RCHARR1 DNA MER1_type 37 941 -33 5 1118 2402 227 45 43 chr6 69986875 69987542 -79529495 + Lx9 LINE L1 6551 7218 -426 5 1118 235 262 36 36 chr6 69988032 69988143 -79528894 + L1M2 LINE L1 5608 5718 -582 6 1118 4050 38 6 18 chr6 69988402 69988914 -79528123 + L1Md_F3 LINE L1 6079 6584 0 6 1118 201 74 0 0 chr6 69989046 69989073 -79527964 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 6 1118 297 267 81 47 chr6 69989223 69989373 -79527664 + MLT1E1A LTR MaLR 356 586 -94 6 1118 214 253 138 32 chr6 69989664 69989758 -79527279 + B1F SINE Alu 1 104 -45 6 1118 507 269 0 0 chr6 69991253 69991372 -79525665 - B3 SINE B2 0 216 98 6 1118 1010 82 0 33 chr6 69991372 69991524 -79525513 + L1_Mus2 LINE L1 6420 6566 0 6 1118 502 288 18 0 chr6 69991541 69991652 -79525385 - B3A SINE B2 -85 113 1 6 1118 2069 128 0 0 chr6 69992046 69992365 -79524672 - L1_Mus4 LINE L1 -296 6340 6022 6 1119 673 234 29 0 chr6 69992709 69992987 -79524050 + (TATG)n Simple_repeat Simple_repeat 1 285 0 6 1119 1187 61 0 0 chr6 69993250 69993397 -79523640 + B1_Mus2 SINE Alu 1 147 0 6 1119 369 0 0 0 chr6 69993397 69993438 -79523599 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1119 314 327 73 46 chr6 69993438 69993547 -79523490 + RSINE1 SINE B4 54 165 0 6 1119 248 356 112 75 chr6 69993670 69993831 -79523206 + MLT1D LTR MaLR 263 429 -76 6 1119 207 188 0 40 chr6 69995619 69995669 -79521368 + A-rich Low_complexity Low_complexity 3 50 0 6 1119 322 297 135 0 chr6 69995729 69995840 -79521197 + B1F SINE Alu 14 139 -10 6 1119 24 32 0 0 chr6 69995986 69996017 -79521020 + AT_rich Low_complexity Low_complexity 1 31 0 6 1119 599 227 0 8 chr6 69996131 69996260 -79520777 - Lx7 LINE L1 -512 7184 7057 6 1119 618 39 0 0 chr6 69996357 69996434 -79520603 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 6 1119 237 307 55 8 chr6 69996476 69996639 -79520398 - L1M3 LINE L1 -624 5667 5492 6 1119 405 0 0 0 chr6 69996851 69996896 -79520141 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1119 486 49 0 0 chr6 69996896 69996957 -79520080 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 6 1119 18498 21 0 0 chr6 69996997 70000000 -79517037 - L1Md_T LINE L1 0 6582 3634 6 1119 17815 45 0 1 chr6 70000000 70003563 -79513474 - L1Md_Gf LINE L1 -2250 3636 1 1 1119 276 297 99 82 chr6 70003563 70003753 -79513284 + MLT1E3 LTR MaLR 358 559 -94 2 1119 1744 187 14 48 chr6 70003908 70004324 -79512713 - Lx4B LINE L1 -925 6133 5732 3 1119 8586 149 28 11 chr6 70004323 70006025 -79511012 + MusHAL1 LINE L1 384 2115 -597 4 1119 7611 151 41 13 chr6 70006028 70007595 -79509442 + Lx2B LINE L1 5384 6997 -3 5 1119 299 91 0 0 chr6 70007621 70007665 -79509372 + Lx5 LINE L1 6386 6429 -621 6 1119 627 14 0 0 chr6 70007666 70007738 -79509299 + (TC)n Simple_repeat Simple_repeat 2 73 0 7 1119 371 302 23 91 chr6 70007893 70008068 -79508969 + RSINE1 SINE B4 3 165 0 8 1119 22 35 0 0 chr6 70008182 70008211 -79508826 + AT_rich Low_complexity Low_complexity 1 29 0 9 1119 1559 6 0 6 chr6 70009592 70009773 -79507264 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1119 223 250 0 0 chr6 70009773 70009817 -79507220 + polypurine Low_complexity Low_complexity 4 47 0 1 1119 31 44 0 0 chr6 70010435 70010480 -79506557 + AT_rich Low_complexity Low_complexity 1 45 0 1 1119 1091 153 0 16 chr6 70010622 70010814 -79506223 - B2_Mm2 SINE B2 -5 190 2 1 1119 6666 136 5 8 chr6 70011017 70013001 -79504036 - L1_Mus3 LINE L1 -1 6637 4659 1 1119 4190 94 11 1 chr6 70013001 70013652 -79503385 - L1VL2 LINE L1 -2090 1525 868 1 1119 279 0 0 0 chr6 70013652 70013683 -79503354 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1119 4190 126 14 18 chr6 70013683 70014216 -79502821 - L1VL2 LINE L1 -5468 867 338 1 1119 2001 118 13 0 chr6 70014223 70014528 -79502509 + RMER17B LTR ERVK 3 311 -647 1 1119 584 122 4 5 chr6 70014531 70014634 -79502403 - L1_Mus2 LINE L1 -15 6567 6470 1 1119 3024 45 0 0 chr6 70014634 70014988 -79502049 - IAPEY2_LTR LTR ERVK -3 354 1 1 1119 374 173 43 52 chr6 70014988 70015000 -79502037 - L1_Mus2 LINE L1 -113 6469 6454 1 1119 1442 61 5 5 chr6 70014993 70015190 -79501847 - L1_Mus2 LINE L1 -185 6381 6185 2 1119 4180 70 0 0 chr6 70015185 70015789 -79501248 + L1_Mus2 LINE L1 5548 6151 -415 2 1119 3019 199 10 32 chr6 70015789 70016380 -79500657 + RMER17B LTR ERVK 291 868 -90 1 1119 520 248 195 42 chr6 70016495 70016731 -79500306 - RLTR10A LTR ERVK 0 411 140 2 1119 1651 208 10 40 chr6 70016771 70017181 -79499856 - RLTR45-int LTR ERVK -202 7042 6522 2 1119 569 234 17 0 chr6 70017290 70017471 -79499566 - MMERVK10C-int LTR ERVK -3726 3855 3511 2 1119 309 258 84 42 chr6 70017504 70017670 -79499367 - MMERVK10C-int LTR ERVK -4129 2413 2241 2 1119 2465 244 148 40 chr6 70018088 70018886 -79498151 - RMER19B LTR ERVK -18 884 1 2 1119 724 271 14 9 chr6 70019073 70019285 -79497752 - B3 SINE B2 0 216 4 2 1119 5774 99 11 5 chr6 70021026 70021849 -79495188 - L1_Mus3 LINE L1 -7 6631 5804 2 1119 21 0 0 0 chr6 70021857 70021878 -79495159 + AT_rich Low_complexity Low_complexity 1 21 0 2 1119 205 156 0 0 chr6 70021993 70022025 -79495012 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1119 946 348 58 78 chr6 70022106 70023102 -79493935 - Lx9 LINE L1 -268 7376 6401 2 1119 240 86 0 0 chr6 70023172 70023207 -79493830 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1119 22 0 0 0 chr6 70023227 70023249 -79493788 + AT_rich Low_complexity Low_complexity 1 22 0 3 1119 243 335 56 86 chr6 70023429 70023593 -79493444 + MLT1D LTR MaLR 273 429 -76 3 1119 908 121 0 66 chr6 70023593 70023744 -79493293 - B1_Mus1 SINE Alu -7 141 1 3 1119 243 335 56 86 chr6 70023744 70023811 -79493226 + MLT1D LTR MaLR 430 497 -8 3 1119 203 287 11 54 chr6 70024984 70025076 -79491961 + GA-rich Low_complexity Low_complexity 4 91 0 3 1119 375 361 0 0 chr6 70025161 70025269 -79491768 + B3 SINE B2 3 110 -106 3 1119 333 0 0 0 chr6 70025290 70025327 -79491710 + (CATA)n Simple_repeat Simple_repeat 2 38 0 3 1119 465 242 131 0 chr6 70025336 70025489 -79491548 + ORR1D2 LTR MaLR 196 368 -2 3 1119 558 29 0 0 chr6 70025837 70025905 -79491132 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1119 397 171 26 13 chr6 70025912 70025989 -79491048 - MTC LTR MaLR -339 82 5 3 1119 529 293 94 34 chr6 70026034 70026327 -79490710 + MLT1D LTR MaLR 162 503 -2 4 1119 1655 218 11 14 chr6 70026385 70026753 -79490284 + ORR1B2 LTR MaLR 1 367 0 4 1119 1741 241 74 5 chr6 70027084 70027530 -79489507 + Lx5 LINE L1 6508 6984 -66 4 1119 900 51 0 0 chr6 70027585 70027703 -79489334 - L1_Mm LINE L1 -1740 4143 4026 4 1119 1830 53 0 9 chr6 70027705 70027935 -79489102 + L1_Mus1 LINE L1 6340 6567 0 4 1119 665 315 30 2 chr6 70028986 70029184 -79487853 + B3 SINE B2 4 211 -5 4 1119 713 354 60 10 chr6 70029883 70030280 -79486757 + Lx8 LINE L1 6800 7216 -257 4 1119 415 124 11 22 chr6 70030895 70030986 -79486051 + (TAGA)n Simple_repeat Simple_repeat 2 91 0 4 1119 4995 105 1 3 chr6 70031089 70031806 -79485231 + L1_Mus4 LINE L1 5914 6629 -7 4 1119 237 266 99 0 chr6 70032440 70032531 -79484506 - MTE2a LTR MaLR 0 379 280 4 1119 719 60 20 0 chr6 70032885 70032985 -79484052 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 5 1119 608 314 60 38 chr6 70033033 70033351 -79483686 - Lx8 LINE L1 -641 6832 6508 5 1119 327 346 6 6 chr6 70033441 70033601 -79483436 + L1_Mm LINE L1 5382 5541 -342 5 1119 180 77 0 0 chr6 70033640 70033666 -79483371 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 5 1119 1101 68 0 0 chr6 70033666 70033813 -79483224 + (TTTC)n Simple_repeat Simple_repeat 1 147 0 5 1119 2161 191 80 12 chr6 70033814 70034313 -79482724 - Lx LINE L1 -12 6642 6110 5 1119 2923 119 35 0 chr6 70034311 70034961 -79482076 + Lx LINE L1 5406 6076 -578 5 1119 631 306 54 18 chr6 70034960 70035316 -79481721 + Lx9 LINE L1 5516 5916 -1728 5 1119 699 271 97 0 chr6 70035509 70035716 -79481321 - RMER1C Other Other -46 1296 1070 5 1119 429 335 58 26 chr6 70035792 70036138 -79480899 - RMER1B Other Other -496 846 162 5 1119 1266 228 100 32 chr6 70036776 70037116 -79479921 + ORR1B2 LTR MaLR 5 367 0 5 1119 291 28 0 0 chr6 70037606 70037642 -79479395 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1119 717 12 0 0 chr6 70037643 70037725 -79479312 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 1119 259 216 66 26 chr6 70038043 70038119 -79478918 + RMER15 LTR ERVL 108 186 -389 6 1119 32275 76 26 9 chr6 70038119 70043375 -79473662 + L1Md_F3 LINE L1 241 5589 -297 6 1119 7646 50 21 0 chr6 70043375 70044285 -79472752 + L1Md_F3 LINE L1 5590 6502 -85 6 1119 207 0 0 0 chr6 70044285 70044308 -79472729 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 6 1119 7646 50 21 0 chr6 70044308 70044361 -79472676 + L1Md_F3 LINE L1 6503 6571 -16 6 1119 213 39 0 0 chr6 70044387 70044413 -79472624 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 6 1119 1534 251 52 6 chr6 70044413 70044777 -79472260 + RMER15 LTR ERVL 195 575 0 6 1119 219 219 15 15 chr6 70044936 70045001 -79472036 + (TTATA)n Simple_repeat Simple_repeat 2 66 0 6 1119 970 363 35 26 chr6 70045677 70046338 -79470699 + MER52-int LTR ERV1 3394 4060 -3031 6 1119 2717 213 69 45 chr6 70046338 70047051 -79469986 + Lx9 LINE L1 6807 7516 -128 6 1119 261 0 0 0 chr6 70047051 70047080 -79469957 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1119 2717 213 69 45 chr6 70047080 70047179 -79469858 + Lx9 LINE L1 7517 7638 -6 6 1119 585 373 7 0 chr6 70047193 70047480 -79469557 + MER52-int LTR ERV1 4069 4357 -2734 6 1119 8078 157 26 3 chr6 70047916 70050212 -79466825 + Lx LINE L1 4299 6646 -8 6 1119 305 283 67 20 chr6 70050227 70050436 -79466601 + L1M2 LINE L1 2381 2566 -4283 7 1119 234 337 74 16 chr6 70050681 70050937 -79466100 + L1_Mur3 LINE L1 2077 2347 -3533 7 1119 395 301 59 81 chr6 70050969 70051751 -79465286 + L1M2 LINE L1 3129 3917 -2931 7 1119 225 132 0 0 chr6 70051910 70051948 -79465089 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 7 1119 3174 28 7 40 chr6 70052534 70052937 -79464100 + RLTR10 LTR ERVK 1 390 0 7 1119 1541 74 46 5 chr6 70053370 70053588 -79463449 + LTRIS2 LTR ERV1 69 295 -269 7 1119 936 51 0 0 chr6 70053596 70053714 -79463323 + (TC)n Simple_repeat Simple_repeat 2 119 0 7 1119 297 0 0 0 chr6 70053714 70053746 -79463291 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1119 1602 194 149 53 chr6 70053754 70054532 -79462505 + RLTR13D1 LTR ERVK 12 894 -8 7 1119 411 73 0 0 chr6 70054532 70054587 -79462450 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1119 1385 75 0 0 chr6 70054920 70055108 -79461929 + L1_Mus1 LINE L1 6154 6341 -226 7 1119 441 351 19 32 chr6 70055184 70055340 -79461697 + RSINE1 SINE B4 7 160 -5 8 1119 286 323 79 16 chr6 70055466 70055655 -79461382 + MLT1D LTR MaLR 304 504 -1 8 1119 500 157 34 0 chr6 70057238 70057327 -79459710 + Lx3B LINE L1 6879 6970 -3 8 1119 464 302 9 0 chr6 70057586 70057702 -79459335 + ID_B1 SINE B4 87 203 -21 8 1119 427 336 23 0 chr6 70057702 70057713 -79459324 + B1F SINE Alu 6 135 -14 8 1119 2498 220 83 1 chr6 70058004 70058691 -79458346 - Lx7 LINE L1 -536 7160 6418 8 1119 1449 191 55 3 chr6 70058694 70059004 -79458033 + Lx7 LINE L1 6078 6403 -1293 8 1119 306 50 0 0 chr6 70059063 70059103 -79457934 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1119 696 109 0 9 chr6 70059289 70059400 -79457637 - Lx LINE L1 -6 6648 6539 8 1119 6461 111 3 68 chr6 70059747 70060070 -79456967 - Lx3C LINE L1 -1284 5692 5378 8 1119 1148 55 7 7 chr6 70060070 70060218 -79456819 + B1_Mus1 SINE Alu 1 148 0 8 1119 6461 106 2 71 chr6 70060218 70061021 -79456016 - Lx3C LINE L1 -506 5377 4640 8 1119 6660 63 1 0 chr6 70061018 70061890 -79455147 + L1_Mus1 LINE L1 5695 6567 0 9 1119 332 125 0 0 chr6 70062040 70062088 -79454949 - URR1B DNA MER1_type 0 225 178 9 1119 428 91 0 15 chr6 70062222 70062289 -79454748 + (TCCC)n Simple_repeat Simple_repeat 1 66 0 9 1119 216 0 0 0 chr6 70062774 70062798 -79454239 + (TAA)n Simple_repeat Simple_repeat 2 25 0 9 1119 2181 140 19 8 chr6 70063047 70063421 -79453616 - Lx2 LINE L1 -512 6485 6108 9 1119 3025 76 2 5 chr6 70063585 70064007 -79453030 + BGLII LTR ERVK 1 421 0 9 1119 701 280 70 43 chr6 70064199 70064639 -79452398 - L1_Mur3 LINE L1 -61 5819 5368 9 1119 708 338 27 3 chr6 70064721 70065050 -79451987 + Lx8 LINE L1 6505 6841 -632 9 1119 268 212 73 24 chr6 70065495 70065577 -79451460 + MTEb LTR MaLR 294 379 0 9 1119 374 303 0 22 chr6 70066061 70066196 -79450841 + (TATATG)n Simple_repeat Simple_repeat 3 134 0 9 1119 401 331 56 38 chr6 70066341 70066501 -79450536 + RSINE1 SINE B4 3 165 0 1 1119 378 337 21 26 chr6 70066629 70066818 -79450219 + MLT1D LTR MaLR 317 504 -1 1 1119 244 336 0 0 chr6 70067939 70068061 -79448976 + A-rich Low_complexity Low_complexity 1 122 0 1 1119 1701 183 12 6 chr6 70068485 70068815 -79448222 + Lx LINE L1 6243 6574 -80 1 1119 2636 119 50 28 chr6 70068828 70069293 -79447744 + RLTR45 LTR ERVK 8 482 0 1 1119 441 54 0 0 chr6 70069500 70069556 -79447481 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1119 357 339 8 32 chr6 70069618 70069743 -79447294 + B1_Mus1 SINE Alu 2 123 -25 1 1119 448 244 32 73 chr6 70069635 70069759 -79447278 + ID_B1 SINE B4 99 217 -7 1 1119 23 0 0 0 chr6 70069912 70069935 -79447102 + AT_rich Low_complexity Low_complexity 1 23 0 1 1119 1927 236 167 6 chr6 70070038 70070669 -79446368 - Lx7 LINE L1 -512 7184 6453 1 1119 395 220 64 0 chr6 70070680 70070789 -79446248 + Lx7 LINE L1 6074 6189 -1507 1 1119 3734 174 19 7 chr6 70071399 70072561 -79444476 + L1_Mur1 LINE L1 796 1977 -1935 1 1119 606 260 75 68 chr6 70072572 70072824 -79444213 + Lx2B LINE L1 6754 7007 -1 1 1119 364 304 82 77 chr6 70072881 70073063 -79443974 + MLT1E3 LTR MaLR 144 326 -298 1 1119 390 234 16 0 chr6 70074456 70074584 -79442453 + L1_Mur3 LINE L1 888 1017 -6711 1 1119 585 186 0 0 chr6 70074590 70074692 -79442345 + L1VL4 LINE L1 202 303 -5999 1 1119 1830 121 34 25 chr6 70074698 70075054 -79441983 + MusHAL1 LINE L1 866 1224 -1488 1 1119 4802 145 18 12 chr6 70075054 70075905 -79441132 + Lx2 LINE L1 5793 6648 -349 1 1119 1127 171 5 5 chr6 70075900 70076123 -79440914 + Lx2 LINE L1 6775 6997 0 1 1119 684 216 13 78 chr6 70076123 70076486 -79440551 + L1_Mur3 LINE L1 939 1261 -5825 1 1119 1145 74 0 0 chr6 70076486 70076634 -79440403 + B1_Mus1 SINE Alu 1 148 0 1 1119 240 231 0 152 chr6 70076634 70076841 -79440196 + L1_Mur3 LINE L1 1262 1431 -4446 1 1119 1034 227 6 3 chr6 70076840 70077154 -79439883 + L1_Mur3 LINE L1 3021 3335 -2545 1 1119 981 230 6 82 chr6 70077156 70077497 -79439540 + L1_Mur1 LINE L1 1 315 -6667 1 1119 796 169 25 28 chr6 70077490 70077686 -79439351 + Lx3_Mus LINE L1 6767 6980 -29 1 1119 2205 203 37 49 chr6 70077679 70078253 -79438784 + L1_Mur3 LINE L1 5229 5795 -85 1 1119 2776 117 177 14 chr6 70078252 70078568 -79438469 + L1VL2 LINE L1 239 637 -5698 1 1119 1848 140 29 56 chr6 70078568 70078946 -79438091 - RLTR9A LTR ERVK 0 368 1 1 1119 2776 117 177 14 chr6 70078946 70079132 -79437905 + L1VL2 LINE L1 638 823 -5512 1 1119 1084 102 0 0 chr6 70079340 70079487 -79437550 + B1_Mm SINE Alu 1 147 0 1 1119 207 88 0 0 chr6 70079492 70079526 -79437511 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1119 5142 98 46 4 chr6 70082512 70083491 -79433546 + L1VL4 LINE L1 753 1770 -1789 1 1119 24 0 0 0 chr6 70084598 70084622 -79432415 + AT_rich Low_complexity Low_complexity 1 24 0 1 1119 450 258 0 0 chr6 70084851 70084975 -79432062 - L1MA4 LINE L1 -395 5905 5782 1 1119 775 189 0 43 chr6 70085105 70085243 -79431794 - B1_Mus1 SINE Alu -6 142 11 1 1119 1717 309 47 102 chr6 70085251 70085526 -79431511 + Lx5 LINE L1 5781 6063 -987 1 1119 1958 172 44 16 chr6 70085526 70085909 -79431128 - ORR1B1 LTR MaLR 0 394 1 1 1119 1717 309 47 102 chr6 70085909 70086925 -79430112 + Lx5 LINE L1 6064 7000 -50 1 1119 231 319 41 62 chr6 70087093 70087190 -79429847 + MTD LTR MaLR 312 406 -13 1 1119 345 310 17 42 chr6 70087406 70087524 -79429513 + PB1D9 SINE Alu 5 119 -1 1 1119 23 33 0 0 chr6 70087531 70087561 -79429476 + AT_rich Low_complexity Low_complexity 1 30 0 1 1119 189 0 0 0 chr6 70087792 70087813 -79429224 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1119 22 0 0 0 chr6 70087967 70087989 -79429048 + AT_rich Low_complexity Low_complexity 1 22 0 1 1119 373 358 48 0 chr6 70088051 70088216 -79428821 + MLT1D LTR MaLR 279 451 -54 1 1119 204 40 0 0 chr6 70088828 70088853 -79428184 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1 1119 363 117 0 0 chr6 70088855 70088915 -79428122 + L1_Mus1 LINE L1 6092 6151 -416 1 1119 319 326 111 42 chr6 70089453 70089597 -79427440 + HAL1-3A_ME LINE L1 2286 2439 -419 1 1119 218 192 0 19 chr6 70089618 70089671 -79427366 + GA-rich Low_complexity Low_complexity 1 52 0 1 1119 1059 139 0 0 chr6 70089671 70089851 -79427186 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 1 1119 261 326 72 78 chr6 70089862 70089965 -79427072 + B3A SINE B2 2 108 -90 1 1119 459 0 0 0 chr6 70089965 70090016 -79427021 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1 1119 261 326 72 78 chr6 70090016 70090065 -79426972 + B3A SINE B2 109 152 -46 1 1119 285 187 161 21 chr6 70090051 70090144 -79426893 + ORR1D1 LTR MaLR 267 372 -2 1 1119 1528 238 8 51 chr6 70090692 70091046 -79425991 - MTC LTR MaLR 0 421 83 1 1119 2556 53 3 0 chr6 70091058 70091376 -79425661 - L1_Mus2 LINE L1 -1 6565 6247 1 1119 329 119 17 17 chr6 70091376 70091436 -79425601 + L1Md_F2 LINE L1 5671 5730 -854 1 1119 6792 102 13 1 chr6 70091405 70093095 -79423942 + L1_Mus2 LINE L1 4857 6566 0 1 1119 1883 71 4 4 chr6 70095018 70095271 -79421766 + L1Md_F2 LINE L1 6330 6582 0 1 1119 284 307 48 29 chr6 70095567 70095671 -79421366 + ID_B1 SINE B4 99 204 -20 1 1119 244 221 154 37 chr6 70096311 70096447 -79420590 - Lx8 LINE L1 0 7473 7322 1 1119 804 243 0 0 chr6 70096540 70096680 -79420357 + ID_B1 SINE B4 85 224 0 1 1119 21 0 0 0 chr6 70097560 70097581 -79419456 + AT_rich Low_complexity Low_complexity 1 21 0 1 1119 536 252 47 8 chr6 70097725 70097853 -79419184 + ETnERV2-int LTR ERVK 7070 7202 -204 1 1119 203 317 132 14 chr6 70098321 70098465 -79418572 + L2a LINE L2 3249 3409 -17 1 1119 690 264 6 29 chr6 70098663 70098830 -79418207 + MTEa LTR MaLR 17 179 -200 1 1119 441 254 49 8 chr6 70098830 70098953 -79418084 + RSINE1 SINE B4 2 129 -36 1 1119 257 338 90 34 chr6 70099019 70099198 -79417839 + MTEa LTR MaLR 169 354 -25 1 1119 327 266 93 39 chr6 70099909 70099970 -79417067 - RLTR20B3 LTR ERVK -10 518 457 1 1119 378 42 0 0 chr6 70099970 70100018 -79417019 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1119 428 218 76 3 chr6 70100018 70100085 -79416952 - RLTR20B3 LTR ERVK -95 482 384 1 1119 228 35 0 0 chr6 70100114 70100143 -79416894 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1119 647 191 19 6 chr6 70100320 70100478 -79416559 + Lx3_Mus LINE L1 6850 7009 0 1 1119 17189 110 15 5 chr6 70100864 70102246 -79414791 - L1_Mus3 LINE L1 0 6638 5233 1 1119 483 18 0 0 chr6 70102246 70102302 -79414735 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1119 17189 130 23 10 chr6 70102302 70104669 -79412368 - L1_Mus3 LINE L1 -651 5232 2853 1 1119 11555 138 128 15 chr6 70104696 70105772 -79411265 - MurERV4_19-int LTR ERVK -903 4877 3695 1 1119 2924 87 5 12 chr6 70105772 70106178 -79410859 + RLTR9D LTR ERVK 1 403 0 1 1119 11555 138 38 13 chr6 70106178 70107529 -79409508 - MurERV4_19-int LTR ERVK -2086 3694 2295 1 1119 3611 158 56 45 chr6 70107529 70108565 -79408472 - RLTR13D1 LTR ERVK 0 1023 1 1 1119 4320 154 3 0 chr6 70108568 70109289 -79407748 - MurERV4_19-int LTR ERVK -3483 2297 1575 1 1119 1988 214 100 6 chr6 70109288 70110117 -79406920 - MurERV4_19-int LTR ERVK -4873 907 1 1 1119 4554 179 74 21 chr6 70110117 70111044 -79405993 - RMER19B LTR ERVK 0 902 1 1 1119 2769 192 85 60 chr6 70111044 70111865 -79405172 - L1_Mur3 LINE L1 -2678 3202 2361 1 1119 228 291 80 26 chr6 70113083 70113196 -79403841 + L1M3 LINE L1 5529 5647 -524 1 1119 309 203 108 0 chr6 70113300 70113374 -79403663 + L1_Mur1 LINE L1 750 831 -6151 1 1119 470 261 70 59 chr6 70113455 70113642 -79403395 + L1_Mur1 LINE L1 642 830 -6152 1 1119 3774 144 53 0 chr6 70113655 70114260 -79402777 + Lx3C LINE L1 6311 6947 -29 1 1119 3180 81 32 0 chr6 70114261 70114669 -79402368 + BGLII LTR ERVK 1 421 0 1 1119 370 150 0 0 chr6 70114839 70114899 -79402138 - RMER3D-int LTR ERVK -2297 545 486 1 1119 196 100 100 0 chr6 70114940 70114990 -79402047 + CT-rich Low_complexity Low_complexity 1 55 0 1 1119 486 170 15 7 chr6 70114990 70115127 -79401910 - RMER3D-int LTR ERVK -2248 594 466 1 1119 34414 61 3 3 chr6 70115131 70119763 -79397274 + L1Md_F3 LINE L1 860 5588 -298 1 1119 8460 51 9 1 chr6 70119764 70120753 -79396284 + L1Md_F3 LINE L1 5590 6586 -1 1 1119 304 374 29 6 chr6 70121374 70121549 -79395488 + MLT1D LTR MaLR 267 445 -60 1 1120 2240 218 62 46 chr6 70124412 70124960 -79392077 + Lx5 LINE L1 6476 7032 -18 1 1120 267 31 0 0 chr6 70124962 70124994 -79392043 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1 1120 392 311 22 22 chr6 70125734 70125869 -79391168 + B1F SINE Alu 14 148 -1 1 1120 622 268 11 53 chr6 70125916 70126105 -79390932 + B3A SINE B2 11 191 -7 1 1120 284 252 37 18 chr6 70126229 70126338 -79390699 - Lx7 LINE L1 0 7696 7586 1 1120 549 44 0 0 chr6 70126381 70126449 -79390588 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1120 3093 237 90 19 chr6 70126604 70127382 -79389655 - Lx7 LINE L1 -441 7255 6423 1 1120 255 259 0 0 chr6 70127382 70127440 -79389597 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1120 972 311 60 55 chr6 70127657 70128093 -79388944 + Lx8 LINE L1 6680 7117 -356 1 1120 2241 69 111 3 chr6 70128512 70128862 -79388175 - L1_Mur1 LINE L1 -2446 3440 3053 1 1120 1186 269 22 84 chr6 70128855 70129305 -79387732 - L1_Mur1 LINE L1 -6558 424 3 1 1120 564 242 6 48 chr6 70129308 70129473 -79387564 - L1_Mur3 LINE L1 -3988 1892 1735 1 1120 1549 232 133 5 chr6 70129473 70129898 -79387139 + Lx7 LINE L1 6431 6909 -787 1 1120 4820 148 4 49 chr6 70129894 70130795 -79386242 + L1Md_A LINE L1 446 1289 -5435 1 1120 7809 64 0 3 chr6 70130791 70132401 -79384636 + L1Md_F2 LINE L1 4953 6557 -25 1 1120 1052 224 5 0 chr6 70132393 70132404 -79384633 + Lx7 LINE L1 6882 6892 -804 1 1120 344 22 22 0 chr6 70132404 70132449 -79384588 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1 1120 1052 224 5 0 chr6 70132449 70132651 -79384386 + Lx7 LINE L1 6893 7095 -601 1 1120 3620 59 0 2 chr6 70133344 70133766 -79383271 + L1Md_F2 LINE L1 6148 6568 -14 1 1120 2399 222 53 53 chr6 70133878 70134443 -79382594 - Lx5 LINE L1 -3 7047 6483 1 1120 1407 146 180 6 chr6 70135111 70135422 -79381615 - L1_Mus4 LINE L1 0 6636 6272 1 1120 353 268 72 0 chr6 70135726 70135823 -79381214 - B1F SINE Alu -32 117 14 1 1120 34396 43 25 23 chr6 70136461 70140984 -79376053 + L1Md_Gf LINE L1 211 4911 -975 1 1120 249 261 31 61 chr6 70140984 70141082 -79375955 - RMER20A LTR ERVK -236 280 186 1 1120 34396 43 25 23 chr6 70141082 70141733 -79375304 + L1Md_Gf LINE L1 4912 5589 -297 1 1120 8996 34 0 0 chr6 70141733 70142728 -79374309 + L1Md_T LINE L1 5587 6581 -1 1 1120 320 369 15 10 chr6 70144013 70144213 -79372824 - MLT1D LTR MaLR -2 503 303 2 1120 297 0 0 0 chr6 70144323 70144356 -79372681 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1120 225 0 0 0 chr6 70144356 70144380 -79372657 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1120 251 392 56 0 chr6 70144383 70144526 -79372511 - RSINE1 SINE B4 -8 157 7 2 1120 257 301 39 78 chr6 70144763 70144943 -79372094 - RLTR15 LTR ERVK -156 203 31 2 1120 206 231 19 0 chr6 70145140 70145192 -79371845 + CT-rich Low_complexity Low_complexity 2 54 0 2 1120 215 272 0 10 chr6 70145220 70145324 -79371713 + (CATATA)n Simple_repeat Simple_repeat 3 105 0 2 1120 230 0 0 32 chr6 70145475 70145506 -79371531 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1120 1022 122 0 13 chr6 70145940 70146090 -79370947 + Lx3_Mus LINE L1 6705 6852 -157 2 1120 7933 206 21 91 chr6 70146089 70147155 -79369882 + L1_Mus3 LINE L1 3893 4907 -973 2 1120 3781 89 23 4 chr6 70147155 70147639 -79369398 - L1_Mus2 LINE L1 0 6566 6074 2 1120 7933 150 17 40 chr6 70147639 70149444 -79367593 + L1_Mus3 LINE L1 4908 6631 -7 2 1120 396 104 0 0 chr6 70149655 70149722 -79367315 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 1120 727 173 77 0 chr6 70149723 70149879 -79367158 + Lx3_Mus LINE L1 6841 7008 -1 2 1120 858 109 0 0 chr6 70149904 70150032 -79367005 + (GAAA)n Simple_repeat Simple_repeat 4 131 0 2 1120 22 35 0 0 chr6 70150087 70150116 -79366921 + AT_rich Low_complexity Low_complexity 1 29 0 2 1120 1981 186 42 25 chr6 70151055 70151457 -79365580 + MTC LTR MaLR 1 409 -12 2 1120 5175 95 60 7 chr6 70151537 70152270 -79364767 - L1_Mus4 LINE L1 -259 6377 5606 2 1120 1519 127 24 8 chr6 70152268 70152522 -79364515 + L1_Mus4 LINE L1 6355 6612 -24 2 1120 935 121 0 0 chr6 70152520 70152652 -79364385 - Lx3A LINE L1 -1155 5826 5695 2 1120 5393 148 19 14 chr6 70152651 70153577 -79363460 + Lx3_Mus LINE L1 5833 6763 -246 2 1120 293 313 77 24 chr6 70153574 70153744 -79363293 + L1_Mur3 LINE L1 224 402 -7326 2 1120 226 306 83 9 chr6 70153800 70153909 -79363128 + L1_Mur3 LINE L1 539 655 -7073 2 1120 510 305 32 37 chr6 70153921 70154139 -79362898 + L1_Mur3 LINE L1 703 919 -6809 2 1120 604 169 26 2 chr6 70154152 70154283 -79362754 + L1_Mur3 LINE L1 1259 1390 -4496 2 1120 288 383 6 38 chr6 70154407 70154567 -79362470 + RMER1A Other Other 84 238 -792 2 1120 3568 225 149 20 chr6 70154567 70155629 -79361408 + RMER1A Other Other 1 961 -69 2 1120 1873 239 146 37 chr6 70155629 70156176 -79360861 + RMER19C LTR ERVK 5 611 0 2 1120 3568 217 174 22 chr6 70156176 70156244 -79360793 + RMER1A Other Other 962 1030 0 2 1120 300 206 0 0 chr6 70156286 70156354 -79360683 + L1_Mur3 LINE L1 1408 1475 -4402 2 1120 301 179 115 10 chr6 70156361 70156457 -79360580 + L1_Mur3 LINE L1 2109 2214 -3666 2 1120 1038 209 86 62 chr6 70156466 70156803 -79360234 + L1_Mur3 LINE L1 2007 2351 -3529 2 1120 315 344 8 16 chr6 70156858 70156982 -79360055 - L1MEf LINE L1 -4524 1676 1554 2 1120 469 332 100 54 chr6 70156998 70157259 -79359778 + B4 SINE B4 9 281 -11 2 1120 745 256 76 102 chr6 70157989 70158333 -79358704 - RMER10A LTR ERVL -106 336 2 2 1120 345 366 30 7 chr6 70158567 70158702 -79358335 + B1F2 SINE Alu 3 140 -9 2 1120 1921 222 39 17 chr6 70158993 70159405 -79357632 - MTC LTR MaLR 0 421 1 2 1120 2913 34 2 175 chr6 70160563 70161032 -79356005 + RLTR10 LTR ERVK 1 388 -2 2 1120 16460 30 2 27 chr6 70161034 70163040 -79353997 + RLTR10-int LTR ERVK 1 1984 -3 2 1120 2667 31 2 142 chr6 70163042 70163487 -79353550 + RLTR10 LTR ERVK 1 383 -7 2 1120 336 250 10 39 chr6 70164058 70164162 -79352875 + CT-rich Low_complexity Low_complexity 4 104 0 2 1120 6102 108 35 12 chr6 70164257 70165140 -79351897 - Lx3_Mus LINE L1 0 7009 6107 2 1120 425 295 40 16 chr6 70168472 70168596 -79348441 + B1F SINE Alu 14 140 -9 2 1120 2235 218 30 42 chr6 70169528 70170093 -79346944 + Lx5 LINE L1 6476 7033 -17 2 1120 189 0 0 0 chr6 70170094 70170115 -79346922 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 2 1120 4961 139 79 14 chr6 70170757 70171654 -79345383 - RMER17B LTR ERVK -3 955 1 2 1120 491 45 15 0 chr6 70171839 70171905 -79345132 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 2 1120 287 343 65 65 chr6 70171952 70172105 -79344932 + B3 SINE B2 45 197 -19 2 1120 3907 161 10 50 chr6 70172339 70173103 -79343934 + MusHAL1 LINE L1 48 767 -2793 2 1120 441 0 0 0 chr6 70173103 70173152 -79343885 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1120 5207 99 9 8 chr6 70173152 70174067 -79342970 + MusHAL1 LINE L1 768 1689 -1870 2 1120 6790 106 32 1 chr6 70174066 70175285 -79341752 + L1_Mus4 LINE L1 5390 6635 -1 2 1120 29 28 0 0 chr6 70175324 70175360 -79341677 + AT_rich Low_complexity Low_complexity 1 36 0 2 1120 1314 180 16 0 chr6 70175476 70175731 -79341306 + Lx6 LINE L1 5333 5591 -289 2 1120 1164 265 55 73 chr6 70175732 70175826 -79341211 + Lx6 LINE L1 5743 5817 -1643 2 1120 6673 58 9 3 chr6 70175826 70176676 -79340361 - RLTR13A LTR ERVK 0 855 1 2 1120 1164 267 61 72 chr6 70176676 70177223 -79339814 + Lx6 LINE L1 5818 6401 -649 2 1120 1130 193 19 24 chr6 70177223 70177435 -79339602 - RLTR13D3 LTR ERVK -903 211 1 2 1120 260 139 0 0 chr6 70177437 70177480 -79339557 + L1_Mur2 LINE L1 4386 4428 -1449 2 1120 4645 130 10 1 chr6 70177480 70178202 -79338835 + Lx3_Mus LINE L1 6279 7006 -3 2 1120 387 0 0 0 chr6 70178261 70178304 -79338733 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 1120 1056 293 55 78 chr6 70178749 70179263 -79337774 + Lx8 LINE L1 6680 7181 -292 2 1120 1848 177 27 58 chr6 70179902 70180428 -79336609 + L1VL4 LINE L1 521 1025 -5310 2 1120 5260 127 67 2 chr6 70180506 70180703 -79336334 - Lx3A LINE L1 -4 6977 6761 2 1120 819 31 0 0 chr6 70180703 70180801 -79336236 + (CATATA)n Simple_repeat Simple_repeat 4 101 0 2 1120 5260 127 67 2 chr6 70180801 70181463 -79335574 - Lx3A LINE L1 -221 6760 6063 2 1120 1034 105 0 50 chr6 70181463 70181644 -79335393 - Lx3A LINE L1 -1017 5964 5793 2 1120 2445 186 86 2 chr6 70181651 70182247 -79334790 + MusHAL1 LINE L1 129 774 -1938 2 1120 446 329 23 85 chr6 70182249 70182425 -79334612 + B3A SINE B2 34 198 0 2 1120 219 88 0 0 chr6 70182599 70182633 -79334404 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1120 27 49 0 0 chr6 70182655 70182696 -79334341 + AT_rich Low_complexity Low_complexity 1 41 0 2 1120 2827 153 31 25 chr6 70182740 70183250 -79333787 - Lx3A LINE L1 -6 6975 6463 2 1120 2788 45 37 3 chr6 70183405 70183760 -79333277 + L1_Mus1 LINE L1 6187 6553 -14 2 1120 2394 181 39 52 chr6 70183875 70184722 -79332315 + L1_Mur1 LINE L1 3 1092 -5892 2 1120 3850 159 10 12 chr6 70184722 70185395 -79331642 - RMER17B LTR ERVK 0 958 287 2 1120 334 105 35 17 chr6 70185398 70185456 -79331581 - L1_Mur1 LINE L1 -1145 4741 4683 2 1120 2491 101 21 0 chr6 70185461 70185848 -79331189 + L1_Mur1 LINE L1 4736 5130 -756 2 1120 6137 124 28 1 chr6 70185848 70186805 -79330232 + Lx3_Mus LINE L1 6008 6990 -19 2 1120 231 36 0 0 chr6 70186805 70186833 -79330204 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1120 1311 214 142 63 chr6 70187165 70187579 -79329458 + RMER21A LTR ERV1 21 467 -480 2 1120 647 244 0 0 chr6 70187551 70187674 -79329363 + RMER21A LTR ERV1 825 947 0 2 1120 4684 120 27 1 chr6 70188530 70189229 -79327808 + Lx LINE L1 5930 6646 -8 2 1120 276 239 37 0 chr6 70189342 70189476 -79327561 + (TATATG)n Simple_repeat Simple_repeat 3 141 0 2 1120 261 291 6 11 chr6 70189483 70189603 -79327434 + GA-rich Low_complexity Low_complexity 1 119 0 2 1120 373 290 46 9 chr6 70189708 70189816 -79327221 + RSINE1 SINE B4 7 118 -47 2 1120 192 182 0 0 chr6 70189850 70189894 -79327143 + GA-rich Low_complexity Low_complexity 2 45 0 2 1120 226 399 56 5 chr6 70189982 70190196 -79326841 + MLT1D LTR MaLR 280 504 -1 2 1120 2460 109 28 18 chr6 70192546 70192938 -79324099 + Lx2 LINE L1 6600 6995 -2 2 1120 181 0 69 0 chr6 70192938 70192967 -79324070 + (TAA)n Simple_repeat Simple_repeat 2 32 0 2 1120 24 0 0 0 chr6 70192967 70192991 -79324046 + AT_rich Low_complexity Low_complexity 1 24 0 2 1120 2084 228 37 54 chr6 70193607 70194178 -79322859 + Lx5 LINE L1 6483 7043 -7 2 1120 1667 27 0 0 chr6 70194521 70194709 -79322328 + B2_Mm1a SINE B2 1 188 -5 2 1120 2320 186 15 46 chr6 70194716 70195451 -79321586 + Lx3_Mus LINE L1 9 1053 -5931 2 1120 26104 106 56 7 chr6 70195461 70198835 -79318202 + Lx3_Mus LINE L1 1191 4638 -1248 2 1120 195 42 0 0 chr6 70198835 70198859 -79318178 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1120 26104 103 33 6 chr6 70198859 70201036 -79316001 + Lx3_Mus LINE L1 4639 6998 -11 2 1120 215 211 17 17 chr6 70201090 70201148 -79315889 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1120 712 0 23 0 chr6 70201319 70201407 -79315630 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 2 1120 3367 232 76 35 chr6 70201447 70202404 -79314633 - Lx7 LINE L1 -267 7429 6434 2 1120 207 0 0 0 chr6 70202442 70202465 -79314572 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2 1120 743 278 0 40 chr6 70202994 70203196 -79313841 - B3 SINE B2 -19 197 4 2 1120 821 329 6 109 chr6 70203706 70204027 -79313010 - MTE2b LTR MaLR -79 300 13 2 1120 483 300 18 21 chr6 70204458 70204737 -79312300 + L1_Mur3 LINE L1 961 1238 -6474 2 1120 498 250 7 91 chr6 70204758 70204912 -79312125 + B1_Mur3 SINE Alu 2 142 -7 2 1120 430 250 26 0 chr6 70204955 70205071 -79311966 + RLTR18-int LTR ERVK 2538 2656 -2705 2 1120 504 192 9 46 chr6 70205094 70205203 -79311834 + RLTR18-int LTR ERVK 2806 2910 -2451 2 1120 511 270 11 70 chr6 70205206 70205393 -79311644 + RLTR18B LTR ERVK 337 512 0 2 1120 842 251 61 88 chr6 70205786 70206193 -79310844 + MYSERV6-int LTR ERVK 500 895 -1431 2 1120 281 298 7 97 chr6 70206193 70206338 -79310699 + RMER4A LTR ERVK 286 417 -49 2 1120 3169 232 55 37 chr6 70206339 70207611 -79309426 + MYSERV6-int LTR ERVK 7813 8958 -1 2 1120 2203 179 41 9 chr6 70207612 70208051 -79308986 + RLTR11B LTR ERVK 1 453 0 2 1120 731 243 69 40 chr6 70208055 70208190 -79308847 + Lx6 LINE L1 7176 7312 -148 2 1120 201 39 0 0 chr6 70208190 70208216 -79308821 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1120 731 243 69 40 chr6 70208216 70208354 -79308683 + Lx6 LINE L1 7313 7457 -3 2 1120 497 202 8 0 chr6 70208354 70208377 -79308660 + polypurine Low_complexity Low_complexity 3 25 0 2 1120 1017 104 23 6 chr6 70208377 70208551 -79308486 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 2 1120 497 202 8 0 chr6 70208551 70208656 -79308381 + GA-rich Low_complexity Low_complexity 26 131 0 2 1120 246 298 89 119 chr6 70208657 70208859 -79308178 + ORR1E LTR MaLR 153 348 -11 2 1120 329 290 35 61 chr6 70209060 70209174 -79307863 + PB1D9 SINE Alu 3 113 -7 2 1120 258 130 0 0 chr6 70209298 70209304 -79307733 + (A)n Simple_repeat Simple_repeat 1 6 0 2 1120 1123 82 0 0 chr6 70209304 70209451 -79307586 + B1_Mm SINE Alu 1 147 0 2 1120 258 130 0 0 chr6 70209451 70209490 -79307547 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1120 318 152 0 0 chr6 70210056 70210115 -79306922 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1120 22 70 0 0 chr6 70210828 70210871 -79306166 + AT_rich Low_complexity Low_complexity 1 43 0 2 1120 5090 125 63 4 chr6 70211213 70212058 -79304979 + Lx3_Mus LINE L1 6107 7001 -8 2 1120 213 242 22 11 chr6 70212166 70212258 -79304779 + GA-rich Low_complexity Low_complexity 4 96 0 3 1120 315 0 0 0 chr6 70214646 70214681 -79302356 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 1120 383 371 21 58 chr6 70214748 70214937 -79302100 + B3A SINE B2 1 182 -16 3 1120 363 272 88 0 chr6 70214947 70215072 -79301965 + ORR1D2 LTR MaLR 180 315 -55 3 1120 1221 168 5 5 chr6 70215078 70215293 -79301744 - Lx2 LINE L1 -6 6991 6777 3 1120 830 229 142 73 chr6 70215313 70215657 -79301380 + RLTR9A LTR ERVK 1 368 0 3 1120 6909 164 9 12 chr6 70215657 70217809 -79299228 - Lx2 LINE L1 -366 6631 4489 3 1120 6952 123 17 3 chr6 70217809 70219322 -79297715 - L1VL4 LINE L1 -1415 2144 611 3 1120 9143 56 3 1 chr6 70219736 70221636 -79295401 - L1Md_F2 LINE L1 0 6582 4679 3 1120 11214 52 0 1 chr6 70221636 70223126 -79293911 - L1Md_F2 LINE L1 -1994 3889 2401 3 1120 35827 19 0 7 chr6 70223128 70228314 -79288723 + L1Md_A LINE L1 442 5586 -297 3 1120 8664 20 1 1 chr6 70228314 70229310 -79287727 + L1Md_A LINE L1 5587 6582 0 3 1120 21 0 0 0 chr6 70229382 70229403 -79287634 + AT_rich Low_complexity Low_complexity 1 21 0 3 1120 6297 81 2 0 chr6 70229403 70230322 -79286715 - L1Md_F2 LINE L1 -3468 2415 1495 3 1120 33555 49 8 4 chr6 70230314 70235444 -79281593 + L1Md_T LINE L1 390 5503 -380 3 1120 7143 40 0 0 chr6 70235444 70236298 -79280739 + L1Md_T LINE L1 5729 6582 0 3 1120 3934 101 1 75 chr6 70236298 70237355 -79279682 - L1Md_F LINE L1 -4369 1514 540 3 1120 414 79 0 0 chr6 70237805 70237868 -79279169 + (TCTCTG)n Simple_repeat Simple_repeat 6 68 0 3 1120 375 23 0 0 chr6 70237868 70237912 -79279125 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1120 2391 235 84 28 chr6 70237987 70238927 -79278110 + Lx9 LINE L1 4950 5970 -1674 3 1120 611 221 41 72 chr6 70238931 70239126 -79277911 + B2_Mm2 SINE B2 5 193 -2 3 1120 198 0 0 0 chr6 70239281 70239303 -79277734 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1120 216 0 0 0 chr6 70239303 70239326 -79277711 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1120 1230 252 166 15 chr6 70239327 70239786 -79277251 + Lx9 LINE L1 6318 6845 -799 3 1120 322 296 11 54 chr6 70239905 70239998 -79277039 + RSINE1 SINE B4 3 91 -74 3 1120 556 359 63 8 chr6 70240102 70240462 -79276575 + L1_Mur3 LINE L1 26 394 -7318 3 1120 627 39 0 0 chr6 70240462 70240540 -79276497 + (TCCC)n Simple_repeat Simple_repeat 2 79 0 3 1120 556 359 63 8 chr6 70240540 70240786 -79276251 + L1_Mur3 LINE L1 395 664 -7048 3 1120 739 264 11 36 chr6 70240833 70241112 -79275925 + L1_Mur3 LINE L1 853 1124 -6588 3 1120 543 254 10 234 chr6 70241393 70241458 -79275579 - RLTR11A2 LTR ERVK -41 412 356 3 1120 1798 138 12 75 chr6 70241458 70241803 -79275234 + ORR1A3 LTR MaLR 2 324 -2 3 1120 621 255 12 227 chr6 70241803 70242275 -79274762 - RLTR11A2 LTR ERVK -98 355 1 3 1120 183 42 0 0 chr6 70242303 70242327 -79274710 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1120 598 256 239 29 chr6 70242376 70242682 -79274355 - ORR1D2 LTR MaLR 0 370 1 3 1120 225 83 0 0 chr6 70243134 70243170 -79273867 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1120 834 236 19 84 chr6 70243377 70243640 -79273397 + RMER5 LTR ERV1 287 532 -2 3 1120 420 71 0 0 chr6 70244115 70244171 -79272866 + (T)n Simple_repeat Simple_repeat 1 56 0 3 1120 1062 96 0 0 chr6 70244171 70244317 -79272720 - B1_Mm SINE Alu 0 147 2 3 1120 1291 253 103 6 chr6 70246215 70246573 -79270464 + MTD LTR MaLR 13 405 -14 3 1120 495 43 0 14 chr6 70247237 70247308 -79269729 + L1Md_F2 LINE L1 6497 6566 -16 3 1120 288 0 0 0 chr6 70248907 70248939 -79268098 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1120 376 225 34 0 chr6 70248940 70249029 -79268008 + Lx3B LINE L1 6879 6970 -3 3 1120 443 289 0 0 chr6 70249290 70249394 -79267643 + ID_B1 SINE B4 87 190 -34 3 1120 22 35 0 0 chr6 70249565 70249594 -79267443 + AT_rich Low_complexity Low_complexity 1 29 0 3 1120 2425 218 86 1 chr6 70249711 70250396 -79266641 - Lx7 LINE L1 -536 7160 6418 3 1120 1414 189 65 3 chr6 70250399 70250706 -79266331 + Lx7 LINE L1 6078 6403 -1293 3 1120 243 61 0 0 chr6 70250765 70250798 -79266239 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1120 680 118 0 9 chr6 70250991 70251102 -79265935 - Lx LINE L1 -6 6648 6539 3 1120 6569 113 7 21 chr6 70251449 70251774 -79265263 - Lx3C LINE L1 -1284 5692 5376 3 1120 1141 63 0 0 chr6 70251774 70251916 -79265121 + B1_Mus1 SINE Alu 1 142 -6 3 1120 206 32 0 31 chr6 70251917 70251949 -79265088 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 3 1120 6569 108 6 22 chr6 70251949 70252688 -79264349 - Lx3C LINE L1 -508 5375 4640 3 1120 6550 65 2 0 chr6 70252685 70253556 -79263481 + L1_Mus1 LINE L1 5695 6567 0 3 1120 316 146 0 0 chr6 70253706 70253754 -79263283 - URR1B DNA MER1_type 0 225 178 3 1120 453 36 0 0 chr6 70253887 70253942 -79263095 + (TCCC)n Simple_repeat Simple_repeat 1 55 0 3 1120 378 0 0 0 chr6 70254436 70254478 -79262559 + (TAA)n Simple_repeat Simple_repeat 2 43 0 3 1121 2239 139 8 3 chr6 70254727 70255103 -79261934 - Lx2 LINE L1 -512 6485 6108 3 1121 2996 78 2 12 chr6 70255267 70255692 -79261345 + BGLII LTR ERVK 1 421 0 3 1121 695 280 70 43 chr6 70255883 70256323 -79260714 - L1_Mur3 LINE L1 -61 5819 5368 3 1121 710 338 27 3 chr6 70256405 70256734 -79260303 + Lx8 LINE L1 6505 6841 -632 3 1121 289 212 74 12 chr6 70257177 70257258 -79259779 + MTEb LTR MaLR 294 379 0 3 1121 329 315 0 23 chr6 70257777 70257910 -79259127 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 3 1121 34807 33 3 8 chr6 70258158 70263353 -79253684 + L1Md_T LINE L1 422 5585 -298 3 1121 7289 38 87 0 chr6 70263354 70264269 -79252768 + L1Md_T LINE L1 5587 6581 -1 3 1121 219 114 0 0 chr6 70264290 70264325 -79252712 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1121 233 29 29 0 chr6 70265873 70265907 -79251130 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1121 1351 219 45 6 chr6 70266353 70266657 -79250380 + Lx LINE L1 6249 6567 -87 3 1121 261 0 0 0 chr6 70266657 70266686 -79250351 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1121 1351 219 45 6 chr6 70266686 70266711 -79250326 + Lx LINE L1 6568 6591 -63 3 1121 391 312 26 35 chr6 70266975 70267091 -79249946 + B1F SINE Alu 6 120 -29 3 1121 23 0 0 0 chr6 70267250 70267273 -79249764 + AT_rich Low_complexity Low_complexity 1 23 0 3 1121 2243 219 164 8 chr6 70267376 70268010 -79249027 - Lx7 LINE L1 -512 7184 6453 3 1121 325 204 78 22 chr6 70268021 70268111 -79248926 + Lx7 LINE L1 6074 6168 -1528 3 1121 405 0 0 0 chr6 70268113 70268158 -79248879 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1121 342 0 0 0 chr6 70268158 70268195 -79248842 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1121 3716 172 8 16 chr6 70268852 70269971 -79247066 + L1VL4 LINE L1 509 1624 -1935 3 1121 582 257 40 51 chr6 70269982 70270234 -79246803 + Lx2B LINE L1 6754 7007 -1 3 1121 372 354 46 52 chr6 70270291 70270464 -79246573 + MLT1E3 LTR MaLR 144 315 -309 3 1121 390 234 16 0 chr6 70271866 70271994 -79245043 + L1_Mur3 LINE L1 888 1017 -6711 3 1121 585 186 0 0 chr6 70272000 70272102 -79244935 + L1VL4 LINE L1 202 303 -5999 3 1121 1803 123 34 26 chr6 70272115 70272464 -79244573 + MusHAL1 LINE L1 873 1224 -1488 3 1121 4728 142 29 12 chr6 70272464 70273306 -79243731 + Lx2 LINE L1 5793 6648 -349 3 1121 1212 153 5 5 chr6 70273301 70273524 -79243513 + Lx2 LINE L1 6775 6997 0 3 1121 714 222 12 78 chr6 70273524 70273886 -79243151 + L1_Mur3 LINE L1 939 1261 -5825 3 1121 1145 74 0 0 chr6 70273886 70274034 -79243003 + B1_Mus1 SINE Alu 1 148 0 3 1121 629 241 4 109 chr6 70274034 70274227 -79242810 + L1_Mur3 LINE L1 1262 1431 -4446 3 1121 1047 224 6 6 chr6 70274228 70274543 -79242494 + L1_Mur3 LINE L1 3021 3335 -2545 3 1121 974 224 9 80 chr6 70274545 70274884 -79242153 + L1_Mur1 LINE L1 1 315 -6667 3 1121 766 176 24 27 chr6 70274877 70275073 -79241964 + Lx3_Mus LINE L1 6767 6980 -29 3 1121 2103 209 36 52 chr6 70275066 70275642 -79241395 + L1_Mur3 LINE L1 5229 5795 -85 3 1121 2863 103 179 14 chr6 70275641 70275956 -79241081 + L1VL2 LINE L1 239 637 -5698 3 1121 1837 140 29 56 chr6 70275956 70276334 -79240703 - RLTR9A LTR ERVK 0 368 1 3 1121 2863 103 179 14 chr6 70276334 70276520 -79240517 + L1VL2 LINE L1 638 823 -5512 3 1121 230 274 0 0 chr6 70276684 70276723 -79240314 + A-rich Low_complexity Low_complexity 1 39 0 3 1121 1098 95 0 0 chr6 70276723 70276870 -79240167 + B1_Mm SINE Alu 1 147 0 3 1121 230 274 0 0 chr6 70276870 70276914 -79240123 + A-rich Low_complexity Low_complexity 40 83 0 3 1121 5123 99 46 4 chr6 70279895 70280874 -79236163 + L1VL4 LINE L1 753 1770 -1789 3 1121 24 0 0 0 chr6 70281981 70282005 -79235032 + AT_rich Low_complexity Low_complexity 1 24 0 3 1121 430 272 13 4 chr6 70282209 70282358 -79234679 - L1MA4 LINE L1 -395 5905 5770 3 1121 775 189 0 43 chr6 70282489 70282627 -79234410 - B1_Mus1 SINE Alu -6 142 11 3 1121 1693 310 47 102 chr6 70282635 70282910 -79234127 + Lx5 LINE L1 5781 6063 -987 3 1121 1945 175 44 16 chr6 70282910 70283293 -79233744 - ORR1B1 LTR MaLR 0 394 1 3 1121 1693 310 47 102 chr6 70283293 70284309 -79232728 + Lx5 LINE L1 6064 7000 -50 3 1121 235 265 132 0 chr6 70284495 70284563 -79232474 + MTE2b LTR MaLR 278 354 -25 3 1121 338 336 17 42 chr6 70284790 70284908 -79232129 + PB1D9 SINE Alu 5 119 -1 3 1121 23 33 0 0 chr6 70284915 70284945 -79232092 + AT_rich Low_complexity Low_complexity 1 30 0 3 1121 229 315 0 0 chr6 70285177 70285231 -79231806 + (CGTG)n Simple_repeat Simple_repeat 2 55 0 3 1121 22 0 0 0 chr6 70285346 70285368 -79231669 + AT_rich Low_complexity Low_complexity 1 22 0 3 1121 342 368 48 0 chr6 70285429 70285595 -79231442 + MLT1D LTR MaLR 278 451 -54 3 1121 375 113 0 0 chr6 70286243 70286305 -79230732 + L1_Mus1 LINE L1 6090 6151 -416 3 1121 331 326 113 28 chr6 70286850 70286992 -79230045 + HAL1-3A_ME LINE L1 2286 2439 -419 3 1121 262 123 17 17 chr6 70286997 70287055 -79229982 + GA-rich Low_complexity Low_complexity 2 59 0 3 1121 603 40 0 0 chr6 70287055 70287129 -79229908 + (GGGA)n Simple_repeat Simple_repeat 4 77 0 3 1121 275 319 72 78 chr6 70287139 70287242 -79229795 + B3A SINE B2 2 108 -90 3 1121 459 0 0 0 chr6 70287242 70287293 -79229744 + (CATA)n Simple_repeat Simple_repeat 4 54 0 3 1121 275 319 72 78 chr6 70287293 70287342 -79229695 + B3A SINE B2 109 152 -46 3 1121 291 187 161 21 chr6 70287328 70287421 -79229616 + ORR1D1 LTR MaLR 267 372 -2 3 1121 1488 237 17 51 chr6 70287969 70288320 -79228717 - MTC LTR MaLR 0 421 83 3 1121 2491 69 3 0 chr6 70288333 70288651 -79228386 - L1_Mus2 LINE L1 -1 6565 6247 3 1121 381 88 0 17 chr6 70288651 70288709 -79228328 + Lx LINE L1 5671 5727 -927 3 1121 6639 100 14 3 chr6 70288681 70290371 -79226666 + L1_Mus2 LINE L1 4857 6565 -1 3 1121 228 368 46 9 chr6 70290430 70290647 -79226390 + MLT1D LTR MaLR 280 504 -1 4 1121 2145 218 66 21 chr6 70293614 70294144 -79222893 + Lx5 LINE L1 6476 7029 -21 4 1121 183 42 0 0 chr6 70294149 70294173 -79222864 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 4 1121 229 356 8 17 chr6 70294539 70294659 -79222378 - MLT1D LTR MaLR 0 505 387 4 1121 348 328 8 24 chr6 70294910 70295050 -79221987 + B1F SINE Alu 11 148 -1 4 1121 597 281 6 50 chr6 70295097 70295277 -79221760 + B3A SINE B2 11 182 -16 4 1121 346 217 14 92 chr6 70295416 70295558 -79221479 - Lx7 LINE L1 -6 7690 7560 4 1121 589 142 18 0 chr6 70295561 70295674 -79221363 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 1121 2587 246 144 17 chr6 70295727 70296605 -79220432 - Lx7 LINE L1 -285 7411 6423 4 1121 255 259 0 0 chr6 70296605 70296663 -79220374 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1121 840 308 60 55 chr6 70296873 70297309 -79219728 + Lx8 LINE L1 6680 7117 -356 4 1121 22063 48 1 1 chr6 70297454 70300352 -79216685 + L1Md_F2 LINE L1 2689 5586 -297 4 1121 7756 57 1 3 chr6 70300352 70301385 -79215652 + L1Md_F2 LINE L1 5587 6582 0 4 1121 1045 183 5 0 chr6 70301386 70301583 -79215454 + Lx7 LINE L1 6895 7092 -604 4 1121 219 354 25 0 chr6 70301583 70301662 -79215375 - PB1D7 SINE Alu -29 91 11 4 1121 3065 93 0 21 chr6 70302280 70302710 -79214327 + L1Md_F2 LINE L1 6148 6568 -14 4 1121 2251 215 57 38 chr6 70302830 70303377 -79213660 - Lx5 LINE L1 -11 7039 6483 4 1121 1295 146 181 7 chr6 70304044 70304354 -79212683 - L1_Mus4 LINE L1 -1 6635 6272 4 1121 252 302 128 0 chr6 70304664 70304750 -79212287 - B4 SINE B4 -93 199 103 4 1121 353 377 15 5 chr6 70306660 70306860 -79210177 - MLT1D LTR MaLR -1 504 303 4 1121 222 37 0 0 chr6 70306971 70306998 -79210039 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 1121 319 308 62 76 chr6 70306999 70307143 -79209894 - RSINE1 SINE B4 0 165 24 4 1121 385 304 18 12 chr6 70307852 70308022 -79209015 + (CATATA)n Simple_repeat Simple_repeat 3 173 0 4 1121 270 0 0 0 chr6 70308106 70308136 -79208901 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 4 1121 985 108 0 13 chr6 70308571 70308721 -79208316 + Lx3_Mus LINE L1 6705 6852 -157 4 1121 8384 171 25 87 chr6 70308720 70309735 -79207302 + Lx3_Mus LINE L1 3892 4900 -977 4 1121 3562 87 23 4 chr6 70309735 70310219 -79206818 - L1_Mus2 LINE L1 0 6566 6074 4 1121 8384 171 24 75 chr6 70310219 70311308 -79205729 + Lx3_Mus LINE L1 4901 5873 -1136 4 1121 1956 62 4 19 chr6 70311308 70311571 -79205466 + L1Md_F2 LINE L1 6324 6582 0 4 1121 5463 170 21 44 chr6 70311571 70312483 -79204554 + Lx3_Mus LINE L1 5874 6757 -252 4 1121 284 299 77 28 chr6 70312485 70312667 -79204370 + L1_Mur3 LINE L1 224 414 -7314 4 1121 443 321 23 32 chr6 70312834 70313053 -79203984 + L1_Mur3 LINE L1 703 919 -6809 4 1121 501 165 35 0 chr6 70313081 70313196 -79203841 + L1_Mur3 LINE L1 1272 1390 -4490 4 1121 295 353 12 44 chr6 70313320 70313480 -79203557 + RMER1A Other Other 84 238 -792 4 1121 2858 239 44 13 chr6 70313480 70314533 -79202504 + RMER1A Other Other 1 956 -74 4 1121 1963 242 34 41 chr6 70314555 70315090 -79201947 + RMER19C LTR ERVK 81 611 0 4 1121 271 206 0 0 chr6 70315200 70315268 -79201769 + L1_Mur3 LINE L1 1408 1475 -4402 4 1121 292 178 77 11 chr6 70315275 70315366 -79201671 + L1_Mur3 LINE L1 2109 2205 -3675 4 1121 923 208 89 65 chr6 70315393 70315717 -79201320 + L1_Mur3 LINE L1 2020 2351 -3529 4 1121 335 336 8 16 chr6 70315772 70315896 -79201141 - L1MEf LINE L1 -4524 1676 1554 4 1121 495 328 100 54 chr6 70315912 70316173 -79200864 + B4 SINE B4 9 281 -11 4 1121 731 300 52 78 chr6 70316890 70317234 -79199803 - RMER10A LTR ERVL -106 336 2 4 1121 266 358 30 7 chr6 70317468 70317603 -79199434 + B1F2 SINE Alu 3 140 -9 4 1121 1833 212 39 17 chr6 70317894 70318306 -79198731 - MTC LTR MaLR 0 421 1 4 1121 184 225 0 40 chr6 70320096 70320170 -79196867 + CT-rich Low_complexity Low_complexity 4 74 0 4 1121 5761 112 29 10 chr6 70320290 70321176 -79195861 - Lx3_Mus LINE L1 0 7009 6107 4 1121 374 303 40 16 chr6 70323751 70323875 -79193162 + B1F SINE Alu 14 140 -9 4 1121 1465 39 0 0 chr6 70323907 70324088 -79192949 + L1Md_T LINE L1 5959 6139 -443 4 1121 1020 315 54 70 chr6 70324457 70325013 -79192024 + Lx8 LINE L1 6680 7226 -247 4 1121 2073 171 29 8 chr6 70325609 70326111 -79190926 + L1VL4 LINE L1 521 1025 -5310 4 1121 5171 130 66 3 chr6 70326188 70326388 -79190649 - Lx3A LINE L1 -4 6977 6761 4 1121 288 0 0 0 chr6 70326388 70326420 -79190617 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1121 5171 130 66 3 chr6 70326420 70327081 -79189956 - Lx3A LINE L1 -221 6760 6063 4 1121 1042 105 0 39 chr6 70327081 70327260 -79189777 - Lx3A LINE L1 -1017 5964 5793 4 1121 2409 191 63 2 chr6 70327267 70327840 -79189197 + MusHAL1 LINE L1 129 736 -1976 4 1121 477 304 23 85 chr6 70327865 70328041 -79188996 + B3A SINE B2 34 198 0 4 1121 198 118 0 0 chr6 70328215 70328249 -79188788 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1121 27 49 0 0 chr6 70328272 70328313 -79188724 + AT_rich Low_complexity Low_complexity 1 41 0 4 1121 2700 140 71 25 chr6 70328357 70328557 -79188480 - Lx3A LINE L1 -6 6975 6783 4 1121 540 0 0 0 chr6 70328557 70328617 -79188420 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1121 2700 140 71 25 chr6 70328617 70328906 -79188131 - Lx3A LINE L1 -199 6782 6465 4 1121 2654 57 42 3 chr6 70329061 70329414 -79187623 + L1_Mus1 LINE L1 6187 6553 -14 4 1121 2479 178 41 43 chr6 70329531 70330377 -79186660 + L1_Mur1 LINE L1 1 1090 -5892 4 1121 3972 157 16 10 chr6 70330377 70331076 -79185961 - RMER17B LTR ERVK 0 958 237 4 1121 2503 91 29 0 chr6 70331114 70331498 -79185539 + L1_Mur1 LINE L1 4736 5130 -756 4 1121 6199 121 28 1 chr6 70331498 70332460 -79184577 + Lx3_Mus LINE L1 6008 6995 -14 4 1121 1242 229 148 60 chr6 70332802 70333090 -79183947 + RMER21A LTR ERV1 21 318 -629 4 1121 5340 37 0 0 chr6 70333090 70333683 -79183354 + L1Md_T LINE L1 5990 6582 0 4 1121 1242 235 89 36 chr6 70333683 70333899 -79183138 + RMER21A LTR ERV1 319 475 -472 4 1121 5077 113 27 1 chr6 70334754 70335453 -79181584 + Lx LINE L1 5930 6646 -8 4 1121 392 258 0 7 chr6 70335566 70335718 -79181319 + (TG)n Simple_repeat Simple_repeat 2 152 0 4 1121 261 291 6 11 chr6 70335728 70335848 -79181189 + GA-rich Low_complexity Low_complexity 1 119 0 4 1121 357 310 43 8 chr6 70335953 70336070 -79180967 + RSINE1 SINE B4 7 127 -38 4 1121 192 182 0 0 chr6 70336095 70336139 -79180898 + GA-rich Low_complexity Low_complexity 2 45 0 4 1121 232 394 56 5 chr6 70336227 70336441 -79180596 + MLT1D LTR MaLR 280 504 -1 4 1121 207 0 0 0 chr6 70337402 70337425 -79179612 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1121 2665 107 28 18 chr6 70338826 70339218 -79177819 + Lx2 LINE L1 6600 6995 -2 4 1121 181 0 69 0 chr6 70339218 70339247 -79177790 + (TAA)n Simple_repeat Simple_repeat 2 32 0 4 1121 2257 228 37 54 chr6 70339881 70340452 -79176585 + Lx5 LINE L1 6483 7043 -7 4 1121 981 244 6 86 chr6 70340791 70341118 -79175919 + Lx3_Mus LINE L1 9 309 -6675 4 1121 2473 123 5 0 chr6 70341151 70341526 -79175511 + Lx3_Mus LINE L1 677 1053 -5931 4 1121 28309 106 55 8 chr6 70341536 70344918 -79172119 + Lx3_Mus LINE L1 1191 4638 -1248 4 1121 195 42 0 0 chr6 70344918 70344942 -79172095 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1121 28309 102 32 6 chr6 70344942 70347117 -79169920 + Lx3_Mus LINE L1 4639 6998 -11 4 1121 217 220 17 17 chr6 70347171 70347231 -79169806 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1121 225 317 40 8 chr6 70347266 70347390 -79169647 - Lx7 LINE L1 -6 7690 7563 4 1121 748 0 22 0 chr6 70347400 70347492 -79169545 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 4 1121 3725 229 77 37 chr6 70347532 70348489 -79168548 - Lx7 LINE L1 -267 7429 6434 4 1121 351 0 0 0 chr6 70348527 70348566 -79168471 + (CATA)n Simple_repeat Simple_repeat 2 40 0 4 1121 818 278 0 54 chr6 70349073 70349297 -79167740 - B3 SINE B2 -1 215 4 4 1121 802 325 6 109 chr6 70349807 70350128 -79166909 - MTE2b LTR MaLR -79 300 13 4 1121 582 300 18 21 chr6 70350559 70350838 -79166199 + L1_Mur3 LINE L1 961 1238 -6474 4 1121 547 250 7 91 chr6 70350859 70351013 -79166024 + B1_Mur3 SINE Alu 2 142 -7 4 1121 481 250 26 0 chr6 70351056 70351172 -79165865 + RLTR18-int LTR ERVK 2538 2656 -2705 4 1121 638 200 8 46 chr6 70351195 70351326 -79165711 + RLTR18-int LTR ERVK 2806 2931 -2430 4 1121 502 277 12 54 chr6 70351326 70351494 -79165543 + RLTR18B LTR ERVK 352 512 0 4 1121 979 249 61 90 chr6 70351875 70352285 -79164752 + MYSERV6-int LTR ERVK 489 886 -1440 4 1121 257 279 56 64 chr6 70352286 70352439 -79164598 + RMER4B LTR ERVK 270 536 -49 4 1121 3654 234 53 39 chr6 70352440 70353716 -79163321 + MYSERV6-int LTR ERVK 7813 8958 -1 4 1121 2422 173 43 9 chr6 70353717 70354155 -79162882 + RLTR11B LTR ERVK 1 453 0 4 1121 806 242 73 33 chr6 70354159 70354312 -79162725 + Lx6 LINE L1 7176 7325 -135 4 1121 216 67 0 0 chr6 70354312 70354342 -79162695 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1121 806 242 73 33 chr6 70354342 70354461 -79162576 + Lx6 LINE L1 7326 7459 -1 4 1121 886 102 27 0 chr6 70354482 70354629 -79162408 + (GAAA)n Simple_repeat Simple_repeat 3 153 0 4 1121 299 150 17 0 chr6 70354630 70354690 -79162347 + GA-rich Low_complexity Low_complexity 1 61 0 4 1121 272 312 108 103 chr6 70354690 70354922 -79162115 + ORR1E LTR MaLR 116 348 -11 4 1121 302 252 70 97 chr6 70355123 70355237 -79161800 + PB1D9 SINE Alu 3 113 -7 4 1121 1128 102 0 0 chr6 70355367 70355514 -79161523 + B1_Mm SINE Alu 1 147 0 4 1121 459 130 0 0 chr6 70356098 70356175 -79160862 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1121 5397 128 63 4 chr6 70357272 70358117 -79158920 + Lx3_Mus LINE L1 6107 7001 -8 4 1121 195 241 12 24 chr6 70358223 70358308 -79158729 + GA-rich Low_complexity Low_complexity 4 87 0 4 1121 315 0 0 0 chr6 70360701 70360736 -79156301 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 4 1121 344 345 0 43 chr6 70360803 70360918 -79156119 + B3 SINE B2 1 110 -106 4 1121 603 92 0 0 chr6 70360933 70361020 -79156017 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 1121 189 0 0 0 chr6 70361020 70361040 -79155997 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 1121 333 288 88 0 chr6 70361046 70361171 -79155866 + ORR1D2 LTR MaLR 180 315 -55 4 1121 1342 159 5 5 chr6 70361177 70361392 -79155645 - Lx2 LINE L1 -6 6991 6777 4 1121 811 219 126 69 chr6 70361412 70361760 -79155277 + RLTR9A LTR ERVK 1 368 0 4 1121 6437 147 8 4 chr6 70361760 70362800 -79154237 - Lx2 LINE L1 -366 6631 5588 4 1121 3295 170 14 42 chr6 70362807 70363458 -79153579 - Lx2 LINE L1 -762 5121 4489 4 1121 7557 123 17 3 chr6 70363458 70364970 -79152067 - L1VL4 LINE L1 -1415 2144 611 4 1121 8257 51 0 3 chr6 70365298 70366541 -79150496 - L1Md_F2 LINE L1 0 6582 5344 4 1121 23 54 0 0 chr6 70366751 70366788 -79150249 + AT_rich Low_complexity Low_complexity 1 37 0 5 1121 816 105 0 0 chr6 70366977 70367120 -79149917 + (TC)n Simple_repeat Simple_repeat 2 144 0 5 1121 186 43 0 0 chr6 70367120 70367142 -79149895 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1121 2750 235 91 38 chr6 70367168 70368174 -79148863 + Lx9 LINE L1 4884 5970 -1674 5 1121 705 221 41 72 chr6 70368178 70368373 -79148664 + B2_Mm2 SINE B2 5 193 -2 5 1121 297 0 0 0 chr6 70368531 70368564 -79148473 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1121 234 0 0 0 chr6 70368564 70368589 -79148448 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1121 1244 259 68 16 chr6 70368682 70369047 -79147990 + Lx9 LINE L1 6462 6845 -799 5 1121 308 307 11 54 chr6 70369166 70369259 -79147778 + RSINE1 SINE B4 3 91 -74 5 1121 609 358 64 11 chr6 70369364 70369724 -79147313 + L1_Mur3 LINE L1 26 394 -7318 5 1121 414 0 0 0 chr6 70369724 70369770 -79147267 + (TCCC)n Simple_repeat Simple_repeat 2 47 0 5 1121 609 358 64 11 chr6 70369770 70370017 -79147020 + L1_Mur3 LINE L1 395 664 -7048 5 1121 869 254 14 29 chr6 70370064 70370340 -79146697 + L1_Mur3 LINE L1 853 1124 -6588 5 1121 551 257 20 238 chr6 70370621 70370686 -79146351 - RLTR11A2 LTR ERVK -41 412 356 5 1121 1918 153 6 70 chr6 70370686 70371031 -79146006 + ORR1A3 LTR MaLR 2 324 -2 5 1121 613 251 38 152 chr6 70371031 70371499 -79145538 - RLTR11A2 LTR ERVK -98 355 1 5 1121 351 0 0 0 chr6 70371528 70371567 -79145470 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1121 676 266 239 29 chr6 70371616 70371922 -79145115 - ORR1D2 LTR MaLR 0 370 1 5 1121 814 198 22 88 chr6 70372624 70372851 -79144186 + RMER5 LTR ERV1 319 530 -4 5 1121 1308 256 94 8 chr6 70375218 70375589 -79141448 + MTD LTR MaLR 3 405 -14 5 1121 1683 308 34 12 chr6 70376538 70377332 -79139705 + RMER1C Other Other 317 897 -445 5 1121 1411 183 89 11 chr6 70377338 70377609 -79139428 - Lx8 LINE L1 -601 6872 6581 5 1121 1976 161 45 0 chr6 70377609 70377920 -79139117 + Lx4A LINE L1 6732 7056 -2 5 1121 2854 214 3 98 chr6 70377921 70378627 -79138410 - RLTR21 LTR ERVK -878 694 56 5 1121 189 0 0 0 chr6 70378627 70378648 -79138389 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1121 235 227 59 29 chr6 70380405 70380473 -79136564 + LTR58 LTR ERV1 239 308 -371 5 1121 28 29 0 0 chr6 70381432 70381467 -79135570 + AT_rich Low_complexity Low_complexity 1 35 0 5 1121 240 185 23 58 chr6 70381488 70381574 -79135463 + A-rich Low_complexity Low_complexity 2 84 0 5 1121 183 80 0 0 chr6 70381587 70381612 -79135425 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1121 497 222 73 18 chr6 70381814 70381924 -79135113 - RLTR33 LTR ERVK -93 585 470 5 1121 481 195 31 50 chr6 70381924 70382121 -79134916 + L1_Mm LINE L1 1464 1654 -4232 5 1121 2143 221 22 6 chr6 70382123 70382615 -79134422 + MYSERV-int LTR ERVK 6046 6545 -5 5 1121 2187 180 40 36 chr6 70382622 70383072 -79133965 + RLTR11B LTR ERVK 2 453 0 5 1121 907 279 63 32 chr6 70383073 70383261 -79133776 + Lx6 LINE L1 7136 7317 -143 5 1121 239 0 0 31 chr6 70383261 70383293 -79133744 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 5 1121 907 279 63 32 chr6 70383293 70383419 -79133618 + Lx6 LINE L1 7318 7460 0 5 1121 541 192 15 0 chr6 70383420 70383550 -79133487 + GA-rich Low_complexity Low_complexity 1 132 0 5 1121 245 294 79 105 chr6 70383953 70384067 -79132970 + PB1D9 SINE Alu 3 113 -7 5 1121 1048 130 7 0 chr6 70384209 70384355 -79132682 + B1_Mm SINE Alu 1 147 0 5 1121 363 105 0 0 chr6 70384583 70384640 -79132397 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1121 22 70 0 0 chr6 70385371 70385414 -79131623 + AT_rich Low_complexity Low_complexity 1 43 0 5 1122 5503 124 65 4 chr6 70385756 70386599 -79130438 + Lx3_Mus LINE L1 6107 7001 -8 5 1122 294 291 29 0 chr6 70386705 70386808 -79130229 + GA-rich Low_complexity Low_complexity 4 109 0 5 1122 1032 214 36 134 chr6 70388476 70388833 -79128204 - RLTRETN_Mm LTR ERVK 0 322 1 5 1122 466 159 0 47 chr6 70388833 70388919 -79128118 - ETnERV2-int LTR ERVK -1 7405 7324 5 1122 231 219 141 0 chr6 70388919 70388983 -79128054 - RLTR13B1 LTR ERVK -371 531 459 5 1122 328 167 17 0 chr6 70388985 70389045 -79127992 - MMETn-int LTR ERVK -158 4686 4626 5 1122 34154 81 5 3 chr6 70389047 70395019 -79122018 - L1Md_F2 LINE L1 0 6582 595 5 1122 295 210 191 92 chr6 70395034 70395186 -79121851 - RLTR13B1 LTR ERVK -572 321 155 5 1122 6706 139 28 39 chr6 70395188 70396110 -79120927 - ETnERV2-int LTR ERVK -203 7203 6256 5 1122 621 0 0 0 chr6 70396110 70396179 -79120858 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 1122 6706 139 28 39 chr6 70396179 70396345 -79120692 - ETnERV2-int LTR ERVK -1151 6255 6128 5 1122 2242 93 0 41 chr6 70396314 70396652 -79120385 - MMETn-int LTR ERVK -1703 3141 2818 5 1122 732 153 21 71 chr6 70396652 70396793 -79120244 + RLTR13B1 LTR ERVK 1 134 -759 5 1122 520 56 0 0 chr6 70396782 70396853 -79120184 - ORR1A0 LTR MaLR -275 71 1 5 1122 13202 54 9 24 chr6 70396853 70397145 -79119892 - ORR1A0-int LTR MaLR 0 1792 1520 5 1122 3094 50 52 11 chr6 70397145 70397559 -79119478 - L1Md_F2 LINE L1 0 6582 6186 5 1122 13202 54 9 24 chr6 70397559 70399083 -79117954 - ORR1A0-int LTR MaLR -273 1519 3 5 1122 3251 26 0 0 chr6 70399084 70399430 -79117607 - ORR1A0 LTR MaLR 0 346 1 5 1122 479 162 29 39 chr6 70399430 70399533 -79117504 - MMETn-int LTR ERVK -4740 104 3 5 1122 978 210 34 132 chr6 70399537 70399894 -79117143 - RLTRETN_Mm LTR ERVK 0 322 1 5 1122 5498 188 14 25 chr6 70400115 70401215 -79115822 - L1_Mm LINE L1 -307 5576 4489 5 1122 1293 143 19 63 chr6 70401215 70401314 -79115723 - MusHAL1 LINE L1 -1415 1297 1198 5 1122 455 120 47 57 chr6 70401314 70401420 -79115617 + L1Md_F2 LINE L1 6478 6582 0 5 1122 1293 143 19 63 chr6 70401420 70401589 -79115448 - MusHAL1 LINE L1 -1515 1197 1041 5 1122 495 256 104 97 chr6 70401592 70401726 -79115311 - RLTR21 LTR ERVK -1437 135 1 5 1122 35 24 0 0 chr6 70401876 70401918 -79115119 + AT_rich Low_complexity Low_complexity 1 42 0 5 1122 232 78 59 0 chr6 70401986 70402037 -79115000 + (CAAAAA)n Simple_repeat Simple_repeat 1 54 0 5 1122 186 43 0 0 chr6 70402106 70402129 -79114908 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1122 235 224 69 0 chr6 70402162 70402220 -79114817 - Lx7 LINE L1 -427 7269 7208 5 1122 2324 174 197 8 chr6 70402331 70402823 -79114214 - RLTR33 LTR ERVK -93 585 1 5 1122 1758 226 7 5 chr6 70403091 70403495 -79113542 - RMER6A LTR ERVK -16 740 336 5 1122 4349 161 32 7 chr6 70403496 70404664 -79112373 + L1Md_F LINE L1 393 1599 -4287 5 1122 2262 230 15 13 chr6 70404692 70405230 -79111807 + MYSERV-int LTR ERVK 6010 6548 -2 5 1122 2186 197 27 13 chr6 70405232 70405679 -79111358 + RLTR11B LTR ERVK 1 453 0 5 1122 841 265 70 35 chr6 70405680 70405857 -79111180 + Lx6 LINE L1 7136 7313 -147 5 1122 397 0 38 0 chr6 70405857 70405910 -79111127 + (TTG)n Simple_repeat Simple_repeat 2 56 0 5 1122 841 265 70 35 chr6 70405910 70406045 -79110992 + Lx6 LINE L1 7314 7459 -1 5 1122 225 125 17 35 chr6 70406045 70406103 -79110934 + GA-rich Low_complexity Low_complexity 1 57 0 5 1122 229 238 59 73 chr6 70406103 70406171 -79110866 - LTR33A LTR ERVL -317 203 137 5 1122 252 296 82 109 chr6 70406527 70406637 -79110400 + PB1D9 SINE Alu 7 113 -7 5 1122 1200 89 0 0 chr6 70406779 70406925 -79110112 + B1_Mm SINE Alu 1 146 -1 5 1122 288 0 0 0 chr6 70407152 70407184 -79109853 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1122 5487 131 55 5 chr6 70408304 70409164 -79107873 + Lx3_Mus LINE L1 6107 7009 0 5 1122 185 245 29 10 chr6 70409254 70409357 -79107680 + GA-rich Low_complexity Low_complexity 4 108 0 5 1122 584 27 14 0 chr6 70411737 70411811 -79105226 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 5 1122 367 329 45 51 chr6 70411877 70412054 -79104983 + B3 SINE B2 1 182 -16 5 1122 375 263 82 15 chr6 70412072 70412207 -79104830 + ORR1D2 LTR MaLR 180 323 -47 5 1122 1156 192 5 0 chr6 70412209 70412417 -79104620 - Lx2 LINE L1 -12 6985 6777 5 1122 6716 133 11 9 chr6 70412418 70412437 -79104600 - Lx2 LINE L1 -353 6644 6632 5 1122 817 218 149 76 chr6 70412437 70412780 -79104257 + RLTR9A LTR ERVK 1 368 0 5 1122 6917 163 15 17 chr6 70412780 70414928 -79102109 - Lx2 LINE L1 -366 6631 4489 5 1122 4998 135 24 2 chr6 70414928 70415803 -79101234 - MusHAL1 LINE L1 -1415 1297 404 5 1122 546 109 0 0 chr6 70416363 70416455 -79100582 + (TC)n Simple_repeat Simple_repeat 2 93 0 5 1122 2629 229 98 34 chr6 70416491 70417484 -79099553 + Lx9 LINE L1 4884 5969 -1675 5 1122 553 242 0 68 chr6 70417488 70417621 -79099416 + B2_Mm2 SINE B2 5 128 -67 5 1122 235 253 40 40 chr6 70417805 70417821 -79099216 + Lx9 LINE L1 6302 6317 -1327 5 1122 558 0 0 0 chr6 70417821 70417883 -79099154 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 1122 435 19 0 0 chr6 70417883 70417934 -79099103 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1122 235 253 40 40 chr6 70417934 70418015 -79099022 + Lx9 LINE L1 6318 6399 -1245 5 1122 1239 198 172 16 chr6 70418049 70418357 -79098680 + Lx9 LINE L1 6485 6840 -804 5 1122 304 337 11 43 chr6 70418479 70418572 -79098465 + RSINE1 SINE B4 3 92 -73 5 1122 600 333 27 52 chr6 70418674 70419196 -79097841 + L1_Mur3 LINE L1 24 532 -7180 5 1122 782 161 8 0 chr6 70419231 70419361 -79097676 - RLTR33 LTR ERVK -547 131 1 5 1122 1840 225 5 2 chr6 70419627 70420032 -79097005 - RMER6A LTR ERVK -14 742 337 5 1122 4068 176 71 7 chr6 70420034 70420890 -79096147 + L1_Mus1 LINE L1 393 1306 -5418 5 1122 800 210 12 0 chr6 70420890 70421052 -79095985 - RLTR33 LTR ERVK -201 477 314 5 1122 21586 117 18 10 chr6 70421063 70424460 -79092577 + L1_Mus1 LINE L1 1333 4755 -1128 5 1122 7737 76 2 7 chr6 70424467 70425599 -79091438 + L1_Mus1 LINE L1 5446 6654 0 5 1122 1447 157 14 21 chr6 70425700 70425980 -79091057 - RMER6A LTR ERVK -422 334 57 5 1122 1869 194 88 8 chr6 70426003 70426471 -79090566 + Lx7 LINE L1 5430 5933 -1763 5 1122 2420 207 12 31 chr6 70426471 70426985 -79090052 - RLTR19C LTR ERVK 0 506 3 5 1122 1324 223 76 37 chr6 70426985 70427047 -79089990 + Lx7 LINE L1 5934 5986 -1710 5 1122 19304 25 7 12 chr6 70427130 70430771 -79086266 + L1Md_A LINE L1 1 3434 -2449 5 1122 365 67 0 0 chr6 70430759 70430804 -79086233 + L1Md_F2 LINE L1 5540 5584 -299 5 1122 8315 57 4 1 chr6 70430807 70431793 -79085244 + L1Md_F2 LINE L1 5588 6576 -6 5 1122 260 244 114 13 chr6 70431831 70431910 -79085127 - MIR SINE MIR -64 204 114 5 1122 1338 75 0 0 chr6 70431945 70432224 -79084813 + (GAAA)n Simple_repeat Simple_repeat 1 279 0 5 1122 4718 158 22 4 chr6 70432224 70433012 -79084025 + L1_Mm LINE L1 5016 5817 -66 5 1122 1166 65 7 0 chr6 70433027 70433181 -79083856 + L1_Mus1 LINE L1 6385 6539 -28 5 1122 39004 47 0 3 chr6 70433182 70439912 -79077125 - L1Md_T LINE L1 0 6585 1 5 1122 268 63 0 0 chr6 70439909 70439958 -79077079 + L1_Mus2 LINE L1 6527 6578 -4 5 1122 7510 133 24 11 chr6 70439986 70441138 -79075899 + Lx2 LINE L1 5827 6993 -4 5 1122 524 271 52 24 chr6 70441239 70441532 -79075505 + L1MA6 LINE L1 5529 5829 -471 5 1122 3146 83 2 2 chr6 70441701 70442098 -79074939 - MTB LTR MaLR -3 397 1 5 1122 252 213 16 47 chr6 70442403 70442467 -79074570 + MLT1D LTR MaLR 444 505 0 5 1122 376 262 149 36 chr6 70444307 70444501 -79072536 - B3 SINE B2 0 216 1 5 1122 1076 148 6 6 chr6 70444535 70444711 -79072326 + B2_Mm2 SINE B2 3 178 -17 5 1122 477 0 0 0 chr6 70445022 70445075 -79071962 + (TAA)n Simple_repeat Simple_repeat 2 54 0 6 1122 4606 110 6 10 chr6 70445710 70446396 -79070641 - Lx LINE L1 0 6654 5972 6 1122 366 363 56 0 chr6 70446841 70447075 -79069962 + Lx8 LINE L1 6502 6748 -725 6 1122 758 290 67 23 chr6 70447086 70447386 -79069651 + Lx8 LINE L1 6831 7143 -330 6 1122 306 0 0 0 chr6 70447428 70447462 -79069575 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1122 787 219 99 25 chr6 70449264 70449444 -79067593 + Lx9 LINE L1 7298 7505 -139 6 1122 198 0 0 0 chr6 70449444 70449466 -79067571 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1122 405 90 0 0 chr6 70449466 70449533 -79067504 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 6 1122 787 219 99 25 chr6 70449533 70449674 -79067363 + Lx9 LINE L1 7506 7643 -1 6 1122 34265 62 3 7 chr6 70450285 70456411 -79060626 + L1Md_F2 LINE L1 450 6545 -37 6 1122 468 0 0 0 chr6 70456642 70456694 -79060343 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1122 2405 222 95 53 chr6 70456711 70457717 -79059320 + Lx9 LINE L1 4884 5965 -1679 6 1122 581 226 97 70 chr6 70457724 70457910 -79059127 + B2_Mm2 SINE B2 3 193 -2 6 1122 438 20 0 0 chr6 70458076 70458127 -79058910 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1122 36 40 0 0 chr6 70458127 70458177 -79058860 + AT_rich Low_complexity Low_complexity 1 50 0 6 1122 4655 100 104 1 chr6 70458177 70458876 -79058161 - L1_Mus3 LINE L1 -10 6628 5858 6 1122 3555 157 46 37 chr6 70458900 70459623 -79057414 - RMER12 LTR ERVK -531 791 63 6 1122 234 125 0 0 chr6 70459665 70459713 -79057324 + (A)n Simple_repeat Simple_repeat 1 48 0 6 1122 361 244 107 16 chr6 70459897 70460018 -79057019 - B1F SINE Alu -17 132 1 6 1122 246 310 22 73 chr6 70460018 70460033 -79057004 - ID_B1 SINE B4 -17 207 79 6 1122 5070 126 54 4 chr6 70460137 70461212 -79055825 + L1VL4 LINE L1 140 1244 -2315 6 1122 261 0 0 0 chr6 70461212 70461241 -79055796 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1122 5070 119 90 7 chr6 70461241 70461866 -79055171 + L1VL4 LINE L1 1245 1921 -1638 6 1122 3314 153 0 0 chr6 70461867 70462443 -79054594 + Lx2 LINE L1 5009 5584 -299 6 1122 409 153 0 0 chr6 70462441 70462513 -79054524 - L1_Mm LINE L1 -977 4906 4835 6 1122 1692 146 68 0 chr6 70462527 70462848 -79054189 - L1_Mm LINE L1 -1683 4200 3858 6 1122 5528 131 16 28 chr6 70462850 70463598 -79053439 - L1VL4 LINE L1 -281 3278 2539 6 1122 4144 95 20 7 chr6 70463598 70464194 -79052843 + L1Md_F2 LINE L1 5966 6569 -13 6 1122 5528 131 16 28 chr6 70464194 70464499 -79052538 - L1VL4 LINE L1 -1021 2538 2237 6 1122 1448 146 4 0 chr6 70464477 70464738 -79052299 - L1VL4 LINE L1 -2010 1549 1288 6 1122 2765 53 3 0 chr6 70464746 70465088 -79051949 - IAPEY_LTR LTR ERVK 0 385 43 6 1122 3511 155 25 6 chr6 70465096 70466162 -79050875 - L1VL4 LINE L1 -2279 1280 191 6 1122 4905 159 7 5 chr6 70466149 70467034 -79050003 + Lx2 LINE L1 5760 6646 -351 6 1122 991 181 24 9 chr6 70467031 70467243 -79049794 + Lx2 LINE L1 6775 6989 -8 6 1122 253 257 29 29 chr6 70467273 70467377 -79049660 + L1_Mur3 LINE L1 5315 5418 -462 6 1122 209 33 33 0 chr6 70467398 70467428 -79049609 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1122 459 202 71 27 chr6 70467433 70467545 -79049492 - RLTR33 LTR ERVK -114 564 448 6 1122 312 344 11 0 chr6 70467744 70467834 -79049203 - PB1D10 SINE Alu -25 92 2 6 1122 22 35 0 0 chr6 70468442 70468471 -79048566 + AT_rich Low_complexity Low_complexity 1 29 0 6 1122 473 0 18 0 chr6 70469296 70469353 -79047684 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1122 611 304 15 10 chr6 70469509 70469705 -79047332 - B3A SINE B2 0 198 2 6 1122 270 0 0 0 chr6 70470113 70470143 -79046894 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 6 1122 2177 361 39 21 chr6 70471167 70472730 -79044307 + MER52-int LTR ERV1 2418 4008 -3083 6 1122 238 247 46 119 chr6 70472787 70473072 -79043965 + L1M4 LINE L1 2899 3162 -2984 6 1122 237 227 0 0 chr6 70473114 70473180 -79043857 + T-rich Low_complexity Low_complexity 1 66 0 6 1122 3224 180 23 39 chr6 70473486 70474150 -79042887 - RMER12 LTR ERVK -607 715 63 6 1122 33806 35 1 0 chr6 70474180 70480038 -79036999 + L1Md_T LINE L1 1 5589 -297 6 1122 8993 7 0 0 chr6 70480038 70481034 -79036003 + L1Md_T LINE L1 5590 6585 0 6 1122 358 179 0 15 chr6 70481037 70481105 -79035932 - RMER12 LTR ERVK -1255 67 1 6 1122 242 328 51 88 chr6 70481222 70481359 -79035678 - B1F2 SINE Alu -17 132 1 6 1122 599 306 143 72 chr6 70481606 70482081 -79034956 - MLT1E1 LTR MaLR 0 654 146 6 1122 564 256 120 17 chr6 70482520 70482695 -79034342 + ORR1D1 LTR MaLR 61 253 -121 6 1122 23962 120 74 27 chr6 70483046 70489359 -79027678 + L1_Mus2 LINE L1 98 6565 -1 6 1122 264 350 110 15 chr6 70489521 70489721 -79027316 + L4 LINE RTE 1622 1840 -189 6 1122 384 326 10 0 chr6 70489767 70489865 -79027172 - PB1D10 SINE Alu -13 104 6 6 1122 483 90 0 0 chr6 70490069 70490147 -79026890 + (TTGG)n Simple_repeat Simple_repeat 1 78 0 6 1122 227 380 87 61 chr6 70490150 70490265 -79026772 - PB1 SINE Alu -9 118 1 6 1122 232 285 55 45 chr6 70490265 70490467 -79026570 - L1M5 LINE L1 -271 5908 5705 6 1122 300 309 0 20 chr6 70490473 70490572 -79026465 + PB1D10 SINE Alu 9 105 -12 6 1122 263 256 135 0 chr6 70490591 70490724 -79026313 - L1M5 LINE L1 -481 5698 5548 6 1122 302 237 157 7 chr6 70490858 70490998 -79026039 - L1MC LINE L1 -863 5283 5123 6 1122 716 319 67 24 chr6 70491052 70491306 -79025731 - MTD LTR MaLR -69 350 86 6 1122 1127 134 21 0 chr6 70491430 70491616 -79025421 - B2_Mm2 SINE B2 -2 193 4 6 1122 657 38 0 0 chr6 70491750 70491830 -79025207 + (TC)n Simple_repeat Simple_repeat 2 81 0 6 1122 321 118 0 0 chr6 70491839 70491890 -79025147 + (TCCCC)n Simple_repeat Simple_repeat 2 52 0 6 1122 2093 200 44 2 chr6 70491891 70492342 -79024695 - Lx6 LINE L1 -592 6868 6399 6 1122 333 131 0 0 chr6 70492468 70492529 -79024508 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1122 351 146 58 0 chr6 70492572 70492690 -79024347 - Lx6 LINE L1 -6448 1280 1156 6 1122 1382 195 15 0 chr6 70492708 70492970 -79024067 + Lx2B LINE L1 6615 6880 -120 6 1122 389 256 184 0 chr6 70493100 70493225 -79023812 - B1_Mur3 SINE Alu 0 149 2 6 1122 185 0 40 0 chr6 70493238 70493263 -79023774 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 1122 1113 82 0 0 chr6 70493274 70493421 -79023616 - B1_Mus1 SINE Alu 0 148 2 6 1122 1511 181 10 3 chr6 70493567 70493856 -79023181 + L1VL4 LINE L1 186 476 -5826 6 1122 5688 157 32 2 chr6 70493846 70495420 -79021617 + Lx LINE L1 5023 6641 -13 6 1122 312 27 0 0 chr6 70495428 70495465 -79021572 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 6 1122 9199 168 12 165 chr6 70495467 70496582 -79020455 + L1_Mur2 LINE L1 3147 4269 -1608 6 1122 1077 158 11 0 chr6 70496582 70496759 -79020278 + B2_Mm1t SINE B2 1 179 -14 6 1122 9199 168 12 165 chr6 70496759 70496806 -79020231 + L1_Mur2 LINE L1 4270 4309 -1568 6 1122 282 170 38 0 chr6 70496806 70496859 -79020178 + B2_Mm2 SINE B2 48 102 -93 6 1122 9199 168 12 165 chr6 70496859 70497361 -79019676 + L1_Mur2 LINE L1 4310 4742 -1135 6 1122 2830 58 50 8 chr6 70497361 70497740 -79019297 + MTA_Mm LTR MaLR 1 395 -1 6 1122 2138 81 10 0 chr6 70497741 70498039 -79018998 + MT-int LTR MaLR 1 301 -797 6 1122 9199 168 12 165 chr6 70498039 70498895 -79018142 + L1_Mur2 LINE L1 4744 5580 -297 6 1122 7479 66 5 7 chr6 70498899 70499881 -79017156 + L1Md_F2 LINE L1 5591 6570 -12 6 1122 613 154 8 0 chr6 70499881 70499998 -79017039 + L1_Mur2 LINE L1 5140 5257 -620 6 1122 788 83 9 0 chr6 70500028 70500137 -79016900 + B1_Mm SINE Alu 38 147 0 1 1122 5064 111 7 15 chr6 70500168 70501240 -79015797 + L1_Mus4 LINE L1 5303 6370 -266 2 1122 4447 159 60 19 chr6 70501240 70502088 -79014949 + RLTR13D6 LTR ERVK 1 883 -19 3 1122 1341 136 82 4 chr6 70502102 70502346 -79014691 + L1_Mus4 LINE L1 6373 6635 -1 2 1122 22 56 0 0 chr6 70502700 70502736 -79014301 + AT_rich Low_complexity Low_complexity 1 36 0 4 1122 4520 54 7 7 chr6 70503850 70504410 -79012627 + LTRIS2 LTR ERV1 5 564 0 5 1122 28 0 0 0 chr6 70504653 70504681 -79012356 + AT_rich Low_complexity Low_complexity 1 28 0 6 1122 324 0 0 0 chr6 70504886 70504922 -79012115 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1122 405 230 0 0 chr6 70504923 70504997 -79012040 - RSINE1 SINE B4 -48 117 44 8 1122 703 282 5 15 chr6 70505069 70505267 -79011770 - B3A SINE B2 0 198 3 9 1122 529 124 10 10 chr6 70505668 70505766 -79011271 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 1 1122 2791 96 8 5 chr6 70505783 70506180 -79010857 + MTB LTR MaLR 1 398 -2 1 1122 313 294 10 0 chr6 70506874 70506976 -79010061 + MER52-int LTR ERV1 2091 2193 -4898 1 1122 17991 69 4 1 chr6 70507891 70511073 -79005964 - L1Md_F2 LINE L1 -13 6569 3377 1 1122 3995 127 27 19 chr6 70511086 70512497 -79004540 - L1Md_F2 LINE L1 -4034 1849 217 1 1122 1134 107 0 0 chr6 70512554 70512722 -79004315 + (TTC)n Simple_repeat Simple_repeat 2 169 0 1 1122 1288 246 58 18 chr6 70512894 70513237 -79003800 + Lx9 LINE L1 6484 6840 -804 1 1122 354 221 83 51 chr6 70513360 70513517 -79003520 + RSINE1 SINE B4 4 165 0 1 1122 261 0 0 0 chr6 70513522 70513551 -79003486 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1122 601 342 46 30 chr6 70513663 70514311 -79002726 + Lx6 LINE L1 42 643 -7085 1 1122 819 246 25 32 chr6 70514338 70514615 -79002422 + Lx6 LINE L1 870 1144 -6584 1 1122 6515 88 22 8 chr6 70514935 70516233 -79000804 + L1_Mus1 LINE L1 5253 6565 -2 1 1122 1240 161 0 97 chr6 70516283 70516531 -79000506 + ORR1A3 LTR MaLR 3 226 -100 2 140 2254 164 187 19 chr6 70516542 70517013 -79000024 - RLTR33 LTR ERVK -128 550 1 2 1123 2940 174 54 102 chr6 70517262 70517997 -78999040 - RMER6A LTR ERVK 0 756 57 2 1123 1753 193 59 13 chr6 70518020 70518501 -78998536 + Lx6 LINE L1 5430 5933 -1527 1 1123 2063 200 32 26 chr6 70518501 70519004 -78998033 - RLTR19C LTR ERVK 0 506 1 2 1123 1362 209 45 23 chr6 70519004 70519027 -78998010 + Lx6 LINE L1 5934 5951 -1509 1 1123 1805 91 0 8 chr6 70519871 70520127 -78996910 + L1Md_F2 LINE L1 6328 6581 -1 2 1123 326 320 40 20 chr6 70520256 70520355 -78996682 - PB1D10 SINE Alu -46 103 3 2 1123 1311 104 10 5 chr6 70520826 70521028 -78996009 + L1_Mus3 LINE L1 6433 6635 -3 2 1123 207 45 91 0 chr6 70521056 70521100 -78995937 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 2 1123 382 250 15 30 chr6 70521136 70521268 -78995769 + CT-rich Low_complexity Low_complexity 2 131 0 2 1123 200 111 28 0 chr6 70521457 70521493 -78995544 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 2 1123 181 338 0 111 chr6 70521657 70521747 -78995290 - L4 LINE RTE -819 1210 1131 3 1123 443 202 211 0 chr6 70522298 70522412 -78994625 + B1_Mus2 SINE Alu 5 142 -5 3 1123 205 218 0 18 chr6 70523430 70523486 -78993551 + T-rich Low_complexity Low_complexity 1 55 0 3 1123 536 0 16 0 chr6 70523667 70523731 -78993306 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1123 326 336 17 17 chr6 70523731 70523846 -78993191 - RSINE1 SINE B4 -46 119 5 3 1123 769 271 6 11 chr6 70523875 70524058 -78992979 - B3A SINE B2 0 198 17 3 1123 2521 124 9 22 chr6 70525226 70525678 -78991359 + L1_Mm LINE L1 4329 4774 -1109 3 1123 14656 104 24 8 chr6 70525694 70528637 -78988400 + L1Md_F2 LINE L1 446 3431 -2452 3 1123 2412 68 16 0 chr6 70528654 70528976 -78988061 + L1Md_F2 LINE L1 6256 6582 0 3 1123 4998 113 16 0 chr6 70528984 70529789 -78987248 + L1Md_F2 LINE L1 4769 5586 -297 3 1123 8041 40 21 1 chr6 70529789 70530762 -78986275 + L1Md_F2 LINE L1 5587 6578 -4 3 1123 13664 154 22 33 chr6 70530766 70533565 -78983472 + L1Md_F2 LINE L1 2819 5586 -297 3 1123 7156 82 8 6 chr6 70533566 70534547 -78982490 + L1Md_F2 LINE L1 5588 6570 -12 3 1123 8508 136 7 10 chr6 70535157 70536896 -78980141 + L1_Mus3 LINE L1 4427 6158 -480 4 1123 213 121 0 0 chr6 70536995 70537028 -78980009 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 4 1123 449 326 48 66 chr6 70537265 70537524 -78979513 + B4A SINE B4 2 277 -15 4 1123 426 227 219 0 chr6 70537850 70537969 -78979068 + B1_Mur4 SINE Alu 1 145 -5 4 1123 21 57 0 0 chr6 70539659 70539694 -78977343 + AT_rich Low_complexity Low_complexity 1 35 0 4 1123 711 33 0 0 chr6 70539903 70539993 -78977044 + (TG)n Simple_repeat Simple_repeat 1 90 0 4 1123 391 267 0 0 chr6 70539993 70540069 -78976968 - RSINE1 SINE B4 -45 120 45 4 1123 536 323 10 15 chr6 70540137 70540335 -78976702 - B3A SINE B2 0 198 2 4 1123 873 202 47 42 chr6 70540629 70540841 -78976196 - RLTRETN_Mm LTR ERVK 0 322 110 4 1123 4076 52 0 0 chr6 70540844 70541361 -78975676 + L1Md_F2 LINE L1 5988 6504 -78 4 1123 402 205 125 103 chr6 70541362 70541498 -78975539 - RLTR9C LTR ERVK -254 139 1 5 1123 353 75 0 19 chr6 70541611 70541665 -78975372 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 5 1123 275 250 103 0 chr6 70541713 70541781 -78975256 - B4 SINE B4 -13 279 205 5 1123 630 390 48 25 chr6 70542691 70543475 -78973562 + MER52-int LTR ERV1 2403 3204 -3887 5 1123 1019 374 10 2 chr6 70543710 70544232 -78972805 + MER52-int LTR ERV1 3479 4004 -3087 5 1123 280 335 58 0 chr6 70544236 70544424 -78972613 + L1M2 LINE L1 2842 3040 -3103 5 1123 315 285 41 14 chr6 70544455 70544601 -78972436 + L1M2 LINE L1 3037 3186 -2957 5 1123 435 19 0 0 chr6 70544896 70544948 -78972089 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1123 341 215 13 0 chr6 70544967 70545046 -78971991 + L1_Mur2 LINE L1 3505 3584 -2293 5 1123 615 113 24 80 chr6 70545672 70545797 -78971240 + RLTR28 LTR ERVL 1 118 -406 5 1123 3894 194 42 61 chr6 70546314 70547460 -78969577 - RMER12 LTR ERVK 0 1322 63 5 1123 220 27 0 51 chr6 70547460 70547499 -78969538 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 5 1123 3894 154 41 57 chr6 70547499 70547566 -78969471 - RMER12 LTR ERVK -1260 62 1 5 1123 375 241 118 15 chr6 70547686 70547821 -78969216 - B1F SINE Alu 0 149 1 6 1123 5506 120 43 11 chr6 70547967 70549690 -78967347 + L1VL4 LINE L1 140 1921 -1638 6 1123 3330 145 2 2 chr6 70549694 70550268 -78966769 + Lx2 LINE L1 5011 5584 -299 6 1123 436 139 0 0 chr6 70550266 70550338 -78966699 - L1VL4 LINE L1 -977 4906 4835 6 1123 14159 142 22 5 chr6 70550352 70553753 -78963284 - L1VL4 LINE L1 -1683 4200 546 6 1123 4742 165 15 5 chr6 70553740 70554618 -78962419 + Lx2 LINE L1 5760 6646 -351 6 1123 1132 151 22 18 chr6 70554615 70554837 -78962200 + Lx2 LINE L1 6775 6997 0 6 1123 274 242 29 48 chr6 70554856 70554960 -78962077 + L1_Mur3 LINE L1 5315 5416 -464 6 1123 210 143 0 0 chr6 70554960 70555009 -78962028 + (A)n Simple_repeat Simple_repeat 1 49 0 6 1123 569 202 26 17 chr6 70555010 70555126 -78961911 - RLTR33 LTR ERVK -114 564 448 6 1123 189 0 0 0 chr6 70555212 70555233 -78961804 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 1123 250 378 40 20 chr6 70555328 70555428 -78961609 - PB1D10 SINE Alu -46 103 2 6 1123 290 205 50 67 chr6 70555942 70556062 -78960975 + CT-rich Low_complexity Low_complexity 2 119 0 6 1123 205 267 0 0 chr6 70556250 70556295 -78960742 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 7 1123 374 329 24 18 chr6 70556525 70556668 -78960369 + B4A SINE B4 3 144 -148 7 1123 493 208 183 0 chr6 70557090 70557210 -78959827 + B1_Mur4 SINE Alu 3 144 -6 7 1123 760 98 15 0 chr6 70558482 70558615 -78958422 + (TG)n Simple_repeat Simple_repeat 2 136 0 7 1123 621 289 15 10 chr6 70558776 70558972 -78958065 - B3A SINE B2 0 198 2 7 1123 188 86 0 28 chr6 70559366 70559402 -78957635 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 7 1123 2064 371 39 15 chr6 70560413 70561967 -78955070 + MER52-int LTR ERV1 2418 4008 -3083 7 1123 230 267 43 105 chr6 70561967 70562309 -78954728 + L1M2 LINE L1 2842 3162 -2984 7 1123 225 153 0 63 chr6 70562351 70562414 -78954623 + T-rich Low_complexity Low_complexity 2 60 0 7 1123 301 398 24 9 chr6 70562450 70562663 -78954374 + L1M2 LINE L1 3255 3470 -2673 7 1123 3384 177 20 87 chr6 70562723 70563490 -78953547 - RMER12 LTR ERVK -607 715 1 7 1123 231 314 59 88 chr6 70563607 70563743 -78953294 - B1F2 SINE Alu -17 132 1 8 1123 541 351 107 36 chr6 70563990 70564465 -78952572 - MLT1E1 LTR MaLR 0 654 146 8 1123 585 218 190 27 chr6 70564876 70565060 -78951977 + ORR1D1 LTR MaLR 40 253 -121 8 1123 19328 132 97 4 chr6 70565412 70570335 -78946702 + L1_Mus1 LINE L1 98 4891 -992 8 1123 34471 54 1 15 chr6 70570329 70575674 -78941363 + L1Md_T LINE L1 322 5586 -297 8 1123 8020 53 1 0 chr6 70575674 70576668 -78940369 + L1Md_T LINE L1 5587 6581 -1 8 1123 6664 109 15 12 chr6 70576682 70578369 -78938668 + L1_Mus1 LINE L1 4877 6566 -1 8 1123 235 351 117 16 chr6 70578532 70578720 -78938317 + L4 LINE RTE 1622 1828 -201 8 1123 364 337 41 0 chr6 70578778 70578876 -78938161 - PB1D7 SINE Alu -13 107 6 8 1123 247 342 23 100 chr6 70579069 70579080 -78937957 - PB1D7 SINE Alu 0 120 111 8 1123 603 78 0 0 chr6 70579080 70579170 -78937867 + (TTGG)n Simple_repeat Simple_repeat 1 90 0 8 1123 247 342 23 100 chr6 70579170 70579288 -78937749 - PB1D7 SINE Alu -10 110 1 8 1123 234 261 60 54 chr6 70579288 70579454 -78937583 - L1M5 LINE L1 -271 5908 5742 8 1123 300 309 0 20 chr6 70579493 70579592 -78937445 + PB1D10 SINE Alu 9 105 -12 9 1123 272 263 135 0 chr6 70579611 70579744 -78937293 - L1M5 LINE L1 -481 5698 5548 8 1123 309 221 134 27 chr6 70579879 70580028 -78937009 - L1MC LINE L1 -863 5283 5119 9 1123 705 311 64 77 chr6 70580073 70580386 -78936651 - MTD LTR MaLR -69 350 42 9 1123 21 57 0 0 chr6 70580413 70580448 -78936589 + AT_rich Low_complexity Low_complexity 1 35 0 9 1123 1188 118 21 0 chr6 70580451 70580637 -78936400 - B2_Mm2 SINE B2 -2 193 4 9 1123 253 228 0 0 chr6 70580728 70580785 -78936252 - Lx7 LINE L1 -747 6949 6893 9 1123 347 182 0 13 chr6 70580799 70580877 -78936160 + C-rich Low_complexity Low_complexity 2 78 0 9 1123 2123 196 44 2 chr6 70580878 70581329 -78935708 - Lx6 LINE L1 -592 6868 6399 9 1123 234 250 0 0 chr6 70581439 70581487 -78935550 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1123 243 0 0 0 chr6 70581488 70581515 -78935522 + (GA)n Simple_repeat Simple_repeat 1 27 0 9 1123 273 29 0 0 chr6 70581515 70581548 -78935489 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1123 341 152 58 0 chr6 70581589 70581707 -78935330 - Lx6 LINE L1 -6448 1280 1156 9 1123 1315 205 12 0 chr6 70581728 70581987 -78935050 + Lx2B LINE L1 6619 6880 -120 1 1123 419 270 175 0 chr6 70582116 70582242 -78934795 - B1_Mur3 SINE Alu 0 149 2 1 1123 221 0 35 0 chr6 70582255 70582284 -78934753 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1123 1060 95 0 7 chr6 70582289 70582437 -78934600 - B1_Mus1 SINE Alu 0 148 2 1 1123 1530 174 10 3 chr6 70582583 70582872 -78934165 + L1VL4 LINE L1 186 476 -5826 1 1123 5647 154 32 2 chr6 70582862 70584433 -78932604 + Lx LINE L1 5023 6638 -16 1 1123 309 68 0 0 chr6 70584434 70584478 -78932559 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 1123 9139 167 10 173 chr6 70584479 70585596 -78931441 + L1_Mur2 LINE L1 3147 4284 -1593 1 1123 1147 136 11 0 chr6 70585596 70585773 -78931264 + B2_Mm1t SINE B2 1 179 -14 1 1123 9139 167 10 173 chr6 70585773 70585820 -78931217 + L1_Mur2 LINE L1 4285 4321 -1556 1 1123 320 197 9 0 chr6 70585820 70585883 -78931154 + B2_Mm2 SINE B2 48 114 -102 1 1123 9139 167 10 173 chr6 70585883 70586405 -78930632 + L1_Mur2 LINE L1 4322 4742 -1135 1 1123 2728 62 61 11 chr6 70586405 70586781 -78930256 + MTA_Mm LTR MaLR 1 395 -1 1 1123 2125 84 10 0 chr6 70586782 70587080 -78929957 + MT-int LTR MaLR 1 301 -797 1 1123 9139 167 10 173 chr6 70587080 70587936 -78929101 + L1_Mur2 LINE L1 4744 5580 -297 1 1123 7571 66 5 4 chr6 70587936 70588919 -78928118 + L1Md_F2 LINE L1 5587 6570 -12 1 1123 699 163 7 0 chr6 70588919 70589066 -78927971 + L1_Mus4 LINE L1 5146 5293 -590 1 1123 788 83 9 0 chr6 70589066 70589175 -78927862 + B1_Mm SINE Alu 38 147 0 1 1123 5080 110 7 15 chr6 70589208 70590280 -78926757 + L1_Mus4 LINE L1 5303 6370 -266 1 1123 4386 165 61 19 chr6 70590280 70591142 -78925895 + RLTR13D6 LTR ERVK 1 1033 0 1 1123 1371 128 82 8 chr6 70591142 70591387 -78925650 + L1_Mus4 LINE L1 6373 6635 -1 1 1123 22 56 0 0 chr6 70591738 70591774 -78925263 + AT_rich Low_complexity Low_complexity 1 36 0 1 1123 4415 63 7 7 chr6 70592975 70593535 -78923502 + LTRIS2 LTR ERV1 5 564 0 1 1123 28 0 0 0 chr6 70593778 70593806 -78923231 + AT_rich Low_complexity Low_complexity 1 28 0 1 1123 468 0 0 0 chr6 70594011 70594063 -78922974 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1123 387 243 0 0 chr6 70594064 70594138 -78922899 - RSINE1 SINE B4 -48 117 44 1 1123 778 292 5 15 chr6 70594210 70594408 -78922629 - B3A SINE B2 0 198 3 1 1123 671 127 8 0 chr6 70594810 70594928 -78922109 + (TTCC)n Simple_repeat Simple_repeat 2 120 0 1 1123 2812 94 8 5 chr6 70594944 70595341 -78921696 + MTB LTR MaLR 1 398 -2 1 1123 294 304 10 0 chr6 70596037 70596139 -78920898 + MER52-int LTR ERV1 2091 2193 -4898 1 1123 31935 85 15 5 chr6 70597051 70603127 -78913910 - L1Md_F2 LINE L1 -12 6570 217 1 1123 1200 111 0 0 chr6 70603185 70603365 -78913672 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1123 1263 247 61 18 chr6 70603539 70603881 -78913156 + Lx9 LINE L1 6484 6840 -804 1 1123 352 245 81 34 chr6 70604004 70604152 -78912885 + RSINE1 SINE B4 4 158 -7 1 1123 441 0 0 0 chr6 70604152 70604201 -78912836 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1123 597 339 46 30 chr6 70604308 70604956 -78912081 + Lx6 LINE L1 42 643 -7085 1 1123 768 262 18 25 chr6 70604982 70605260 -78911777 + Lx6 LINE L1 869 1144 -6584 1 1123 6592 89 22 2 chr6 70605585 70606875 -78910162 + L1_Mus1 LINE L1 5253 6566 -1 1 1123 1253 152 0 97 chr6 70606924 70607172 -78909865 + ORR1A3 LTR MaLR 3 226 -100 1 1123 2320 156 187 19 chr6 70607183 70607654 -78909383 - RLTR33 LTR ERVK -128 550 1 1 1123 3218 177 12 100 chr6 70607905 70608673 -78908364 - RMER6A LTR ERVK 0 756 57 1 1123 1717 198 58 27 chr6 70608696 70609183 -78907854 + Lx6 LINE L1 5430 5933 -1527 1 1123 1998 193 46 32 chr6 70609183 70609682 -78907355 - RLTR19C LTR ERVK 0 506 1 1 1123 1360 220 28 25 chr6 70609682 70609705 -78907332 + Lx6 LINE L1 5934 5951 -1509 1 1123 1741 87 4 23 chr6 70610542 70610802 -78906235 + L1Md_F2 LINE L1 6328 6582 0 1 1123 336 324 40 21 chr6 70610915 70611029 -78906008 - PB1D10 SINE Alu -32 117 3 1 1123 1416 108 10 5 chr6 70611497 70611702 -78905335 + L1_Mus3 LINE L1 6430 6635 -3 1 1123 224 77 26 0 chr6 70611730 70611769 -78905268 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 1123 389 246 15 31 chr6 70611802 70611932 -78905105 + CT-rich Low_complexity Low_complexity 4 131 0 1 1123 221 83 28 0 chr6 70612123 70612159 -78904878 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 1 1123 231 377 45 68 chr6 70612386 70612608 -78904429 + B4A SINE B4 2 218 -74 1 1123 530 193 219 0 chr6 70612960 70613079 -78903958 + B1_Mur4 SINE Alu 1 145 -5 1 1123 205 218 0 18 chr6 70614087 70614143 -78902894 + T-rich Low_complexity Low_complexity 1 55 0 1 1123 533 15 15 0 chr6 70614324 70614390 -78902647 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1123 340 327 17 17 chr6 70614390 70614505 -78902532 - RSINE1 SINE B4 -46 119 5 1 1123 685 304 6 11 chr6 70614534 70614717 -78902320 - B3A SINE B2 0 198 17 1 1123 2545 138 22 18 chr6 70615887 70616331 -78900706 + L1_Mm LINE L1 4329 4774 -1109 1 1123 16832 111 308 12 chr6 70616343 70619353 -78897684 + L1_Mus1 LINE L1 442 4025 -1858 1 1123 2712 43 15 6 chr6 70619353 70619677 -78897360 + L1Md_F2 LINE L1 6256 6582 0 1 1123 16832 86 192 7 chr6 70619677 70621453 -78895584 + L1_Mus1 LINE L1 4026 6567 0 1 1123 459 0 0 0 chr6 70622524 70622575 -78894462 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1123 1167 75 7 0 chr6 70622631 70622777 -78894260 + B1_Mus1 SINE Alu 1 147 -1 1 1123 399 89 0 0 chr6 70623025 70623081 -78893956 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1123 380 304 18 18 chr6 70623082 70623196 -78893841 - RSINE1 SINE B4 -48 117 4 1 1123 750 297 5 5 chr6 70623224 70623420 -78893617 - B3A SINE B2 -1 197 2 1 1123 184 29 0 103 chr6 70623799 70623838 -78893199 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1 1123 292 240 92 13 chr6 70623889 70623965 -78893072 - B4 SINE B4 -13 279 198 1 1123 296 353 15 0 chr6 70624507 70624640 -78892397 + MER52-int LTR ERV1 2059 2193 -4898 1 1123 7101 103 15 1 chr6 70624981 70626534 -78890503 + L1_Mus1 LINE L1 4997 6567 0 1 1123 23 33 0 0 chr6 70626544 70626574 -78890463 + AT_rich Low_complexity Low_complexity 1 30 0 1 1123 764 131 41 0 chr6 70626580 70626702 -78890335 + B1_Mus1 SINE Alu 1 127 -21 1 1123 575 27 14 0 chr6 70626726 70626799 -78890238 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1123 355 293 15 29 chr6 70627138 70627275 -78889762 + CT-rich Low_complexity Low_complexity 1 135 0 1 1123 535 124 22 0 chr6 70628329 70628418 -78888619 + L1_Mus2 LINE L1 6475 6565 -1 1 1123 21 0 0 0 chr6 70628422 70628443 -78888594 + AT_rich Low_complexity Low_complexity 1 21 0 1 1123 2599 177 177 6 chr6 70628449 70629026 -78888011 - RLTR33 LTR ERVK -14 664 1 1 1123 1115 191 46 4 chr6 70629280 70629517 -78887520 - RMER6A LTR ERVK 0 756 510 1 1123 295 334 25 18 chr6 70629590 70629695 -78887342 - PB1D10 SINE Alu -211 103 1 1 1123 1095 148 58 0 chr6 70630143 70630332 -78886705 + L1_Mus3 LINE L1 6433 6632 -6 1 1123 260 125 0 65 chr6 70630434 70630511 -78886526 + CT-rich Low_complexity Low_complexity 4 75 0 1 1123 198 103 0 0 chr6 70630704 70630733 -78886304 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 1 1123 340 316 32 0 chr6 70630964 70631059 -78885978 + B4A SINE B4 1 98 -194 1 1123 3679 42 28 12 chr6 70631325 70631754 -78885283 + RLTR10C LTR ERVK 1 436 0 1 1123 1445 50 0 17 chr6 70631754 70631935 -78885102 + MMERVK10C-int LTR ERVK 1 178 -7403 1 1123 229 112 83 48 chr6 70632026 70632110 -78884927 + GA-rich Low_complexity Low_complexity 3 89 0 1 1123 363 67 0 0 chr6 70632110 70632155 -78884882 + MMERVK10C-int LTR ERVK 93 137 -6405 1 1123 19419 48 0 0 chr6 70632158 70634659 -78882378 + MMERVK10C-int LTR ERVK 3512 5810 -1771 1 1123 332 106 0 0 chr6 70634645 70634692 -78882345 + MMERVK10C-int LTR ERVK 6646 6692 -889 1 1123 247 18 70 35 chr6 70634694 70634751 -78882286 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1 1123 6873 43 11 60 chr6 70634754 70635670 -78881367 + MMERVK10C-int LTR ERVK 6688 7558 -23 1 1123 2424 39 25 0 chr6 70635675 70635960 -78881077 + MMERVK10C-int LTR ERVK 7290 7581 0 1 1123 3746 38 28 9 chr6 70635960 70636388 -78880649 + RLTR10C LTR ERVK 1 436 0 1 1123 534 203 171 8 chr6 70636600 70636729 -78880308 + B1_Mur4 SINE Alu 1 150 0 1 1123 1036 122 7 0 chr6 70637750 70637889 -78879148 + B1_Mus1 SINE Alu 1 140 -8 1 1123 420 194 0 0 chr6 70637890 70638034 -78879003 + (TA)n Simple_repeat Simple_repeat 1 144 0 1 1123 27 62 0 0 chr6 70638174 70638222 -78878815 + AT_rich Low_complexity Low_complexity 1 48 0 1 1123 372 43 0 0 chr6 70638260 70638306 -78878731 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1123 429 281 0 34 chr6 70638307 70638425 -78878612 - RSINE1 SINE B4 -48 117 4 1 1123 726 301 5 10 chr6 70638453 70638651 -78878386 - B3A SINE B2 0 198 2 1 1123 1171 58 19 6 chr6 70639010 70639167 -78877870 - L1Md_F3 LINE L1 -2 6582 6424 1 1123 218 143 23 23 chr6 70639196 70639239 -78877798 + CT-rich Low_complexity Low_complexity 2 44 0 1 1123 295 353 15 0 chr6 70639908 70640041 -78876996 + MER52-int LTR ERV1 2059 2193 -4898 1 1123 5676 98 29 3 chr6 70640382 70641696 -78875341 + L1_Mus1 LINE L1 4997 6340 -227 1 1123 2823 91 21 16 chr6 70641701 70642082 -78874955 - IAPEY_LTR LTR ERVK -2 383 1 1 1123 21099 68 3 7 chr6 70642082 70644802 -78872235 - IAPEy-int LTR ERVK 0 7513 4804 1 1123 6818 120 8 16 chr6 70644802 70645868 -78871169 - IAPEy-int LTR ERVK -6455 1058 1 1 1123 2163 84 48 3 chr6 70645875 70646187 -78870850 - IAPEY_LTR LTR ERVK -2 383 58 1 1123 1766 113 0 0 chr6 70646187 70646425 -78870612 + L1_Mus1 LINE L1 6330 6567 0 1 1123 27 0 0 0 chr6 70646435 70646462 -78870575 + AT_rich Low_complexity Low_complexity 1 27 0 1 1123 888 113 40 0 chr6 70646468 70646592 -78870445 + B1_Mus1 SINE Alu 1 129 -19 1 1123 341 278 15 31 chr6 70646940 70647070 -78869967 + CT-rich Low_complexity Low_complexity 4 131 0 1 1123 257 372 21 55 chr6 70647548 70647693 -78869344 + B4A SINE B4 2 141 -151 1 1124 613 195 179 0 chr6 70648124 70648247 -78868790 + B1_Mur4 SINE Alu 1 145 -5 1 1124 207 247 130 0 chr6 70649117 70649194 -78867843 + L2 LINE L2 2740 2826 -593 1 1124 1201 61 0 18 chr6 70649513 70649735 -78867302 + (TG)n Simple_repeat Simple_repeat 1 217 0 1 1124 382 304 18 18 chr6 70649736 70649850 -78867187 - RSINE1 SINE B4 -48 117 4 1 1124 775 278 15 10 chr6 70649878 70650074 -78866963 - B3A SINE B2 0 198 2 1 1124 183 42 0 0 chr6 70650257 70650281 -78866756 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1124 3260 128 2 2 chr6 70650285 70650763 -78866274 - L1_Mus4 LINE L1 -3 6633 6156 2 1124 4676 167 14 0 chr6 70650767 70651569 -78865468 - L1_Mm LINE L1 -114 5769 4957 2 1124 623 57 11 11 chr6 70651569 70651658 -78865379 + L1_Mus2 LINE L1 6468 6556 -10 2 1124 382 78 0 0 chr6 70651658 70651709 -78865328 + B1_Mus2 SINE Alu 85 135 -12 2 1124 354 278 15 31 chr6 70652060 70652190 -78864847 + CT-rich Low_complexity Low_complexity 4 131 0 2 1124 204 163 0 0 chr6 70652380 70652423 -78864614 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 2 1124 279 311 46 19 chr6 70652663 70652771 -78864266 + B4A SINE B4 2 112 -180 2 1124 644 179 179 0 chr6 70653236 70653359 -78863678 + B1_Mur4 SINE Alu 1 145 -5 2 1124 7417 84 41 8 chr6 70654547 70655920 -78861117 + L1_Mus3 LINE L1 5227 6637 -1 2 1124 888 235 74 10 chr6 70656487 70656689 -78860348 + B3 SINE B2 1 215 -1 2 1124 24 32 0 0 chr6 70656825 70656856 -78860181 + AT_rich Low_complexity Low_complexity 1 31 0 2 1124 3439 65 5 7 chr6 70657020 70657469 -78859568 + L1Md_F2 LINE L1 5138 5585 -298 2 1124 8756 42 1 5 chr6 70657470 70658469 -78858568 + L1Md_F2 LINE L1 5587 6581 -1 2 1124 321 117 0 0 chr6 70658890 70658950 -78858087 + (TTG)n Simple_repeat Simple_repeat 2 61 0 2 1124 758 214 19 112 chr6 70660261 70660438 -78856599 + B3A SINE B2 7 170 -28 2 1124 432 0 0 0 chr6 70660438 70660486 -78856551 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1124 758 214 19 112 chr6 70660486 70660513 -78856524 + B3A SINE B2 171 192 -6 2 1124 806 229 105 11 chr6 70661428 70661609 -78855428 - B3A SINE B2 0 198 1 2 1124 231 345 24 106 chr6 70661634 70661757 -78855280 - RMER15 LTR ERVL -127 448 336 2 1124 3318 275 76 24 chr6 70661801 70662131 -78854906 - Lx8 LINE L1 -260 7213 6855 2 1124 189 0 0 0 chr6 70662131 70662152 -78854885 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1124 3318 275 76 24 chr6 70662152 70662926 -78854111 - Lx8 LINE L1 -619 6854 6052 2 1124 668 249 97 105 chr6 70662988 70663379 -78853658 - RMER5 LTR ERV1 -90 444 57 2 1124 225 94 0 0 chr6 70663388 70663420 -78853617 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1124 1700 204 87 73 chr6 70663430 70663923 -78853114 - Lx2B LINE L1 -37 6963 6464 2 1124 651 26 0 0 chr6 70664645 70664722 -78852315 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1124 282 56 0 0 chr6 70664835 70664871 -78852166 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1124 1240 298 119 9 chr6 70665438 70665609 -78851428 + L1M2 LINE L1 4519 4708 -1435 2 1124 243 0 0 0 chr6 70665609 70665636 -78851401 + (CACAT)n Simple_repeat Simple_repeat 2 28 0 2 1124 1240 298 119 9 chr6 70665636 70666205 -78850832 + L1M2 LINE L1 4709 5340 -803 2 1124 293 244 93 27 chr6 70666230 70666357 -78850680 + L1M2 LINE L1 5407 5544 -768 2 1124 905 239 233 57 chr6 70666729 70667510 -78849527 + RMER1A Other Other 31 882 -148 2 1124 513 0 0 0 chr6 70667510 70667567 -78849470 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1124 495 0 0 0 chr6 70667567 70667621 -78849416 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1124 905 234 262 30 chr6 70667621 70667742 -78849295 + RMER1A Other Other 883 1029 -1 2 1124 851 279 41 35 chr6 70667749 70668065 -78848972 + L1_Rod LINE L1 5429 5746 -101 2 1124 186 209 0 0 chr6 70669623 70669666 -78847371 + CT-rich Low_complexity Low_complexity 5 47 0 2 1124 553 242 151 6 chr6 70672108 70672274 -78844763 - B3A SINE B2 -7 191 2 2 1124 24 53 0 0 chr6 70672338 70672376 -78844661 + AT_rich Low_complexity Low_complexity 1 38 0 2 1124 185 65 32 0 chr6 70676862 70676893 -78840144 + (TCC)n Simple_repeat Simple_repeat 1 32 0 2 1124 273 250 128 9 chr6 70677618 70677727 -78839310 + L1M5 LINE L1 5713 5834 -406 2 1124 433 303 84 19 chr6 70678764 70679075 -78837962 + L1MD2 LINE L1 5810 6143 -216 2 1124 759 363 36 9 chr6 70679780 70680114 -78836923 + MLT1C LTR MaLR 123 465 -2 2 1124 237 169 8 56 chr6 70680159 70680178 -78836859 + T-rich Low_complexity Low_complexity 102 120 0 2 1124 285 29 0 0 chr6 70680178 70680212 -78836825 + (TGG)n Simple_repeat Simple_repeat 1 34 0 2 1124 237 169 8 56 chr6 70680212 70680317 -78836720 + T-rich Low_complexity Low_complexity 3 101 0 2 1124 360 115 0 0 chr6 70680321 70680382 -78836655 - B1_Mur4 SINE Alu 0 150 90 2 1124 213 121 0 0 chr6 70680450 70680483 -78836554 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2 1124 719 274 14 29 chr6 70680503 70680710 -78836327 + Lx8 LINE L1 7148 7351 -122 2 1124 21 57 0 0 chr6 70680762 70680797 -78836240 + AT_rich Low_complexity Low_complexity 1 35 0 2 1124 212 284 0 73 chr6 70680865 70681002 -78836035 + GA-rich Low_complexity Low_complexity 2 128 0 2 1124 230 250 71 38 chr6 70681211 70681394 -78835643 + MER33 DNA MER1_type 63 251 -73 2 1124 760 57 0 36 chr6 70681387 70681497 -78835540 - B1_Mm SINE Alu 0 147 42 2 1124 579 165 0 0 chr6 70681500 70681639 -78835398 + (TCTCTG)n Simple_repeat Simple_repeat 1 139 0 2 1124 314 88 0 66 chr6 70681639 70681700 -78835337 - B1_Mus2 SINE Alu -88 59 3 2 1124 265 194 0 88 chr6 70681643 70681711 -78835326 - B4A SINE B4 -150 142 81 2 1124 987 9 0 0 chr6 70681812 70681924 -78835113 + (CTTTG)n Simple_repeat Simple_repeat 2 113 0 2 1124 767 187 7 7 chr6 70681959 70682094 -78834943 - B1_Mur2 SINE Alu -12 137 3 2 1124 22 35 0 0 chr6 70682420 70682449 -78834588 + AT_rich Low_complexity Low_complexity 1 29 0 2 1124 337 224 8 108 chr6 70682470 70682600 -78834437 + L1_Rod LINE L1 3798 3914 -1933 2 1124 7694 63 13 8 chr6 70682601 70683576 -78833461 - L1_Mus2 LINE L1 0 6566 5587 2 1124 1033 260 66 29 chr6 70683588 70683936 -78833101 + L1_Rod LINE L1 3904 4264 -1583 2 1124 958 155 171 0 chr6 70684321 70684405 -78832632 + URR1A DNA MER1_type 1 94 -132 2 1124 249 108 0 0 chr6 70684405 70684442 -78832595 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1124 958 155 171 0 chr6 70684442 70684550 -78832487 + URR1A DNA MER1_type 95 225 -1 2 1124 393 250 48 0 chr6 70685191 70685295 -78831742 + PB1D10 SINE Alu 7 115 -2 2 1124 224 255 0 0 chr6 70686381 70686428 -78830609 - B1F SINE Alu -7 142 96 2 1124 535 236 0 18 chr6 70687070 70687182 -78829855 - B1F2 SINE Alu -7 142 33 2 1124 495 0 0 0 chr6 70687675 70687730 -78829307 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1124 344 113 0 31 chr6 70688416 70688480 -78828557 + (TCTCCC)n Simple_repeat Simple_repeat 2 63 0 2 1124 458 252 19 0 chr6 70688532 70688639 -78828398 - PB1D10 SINE Alu 0 117 9 2 1124 573 76 0 0 chr6 70688648 70688727 -78828310 + (TTTC)n Simple_repeat Simple_repeat 4 82 0 2 1124 299 239 0 40 chr6 70689624 70689698 -78827339 + B3 SINE B2 1 71 -145 2 1124 381 291 36 22 chr6 70689969 70690106 -78826931 + B1F1 SINE Alu 3 141 -8 2 1124 416 262 0 0 chr6 70690116 70690196 -78826841 + ID4_ SINE ID 4 83 0 2 1124 306 0 0 0 chr6 70691152 70691186 -78825851 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1124 319 314 77 94 chr6 70691939 70692174 -78824863 + B4A SINE B4 2 232 -60 2 1124 207 266 15 15 chr6 70692214 70692279 -78824758 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1124 196 366 48 24 chr6 70694584 70694710 -78822327 + MIRb SINE MIR 17 145 -123 2 1124 255 152 0 0 chr6 70694853 70694899 -78822138 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1124 641 277 14 14 chr6 70694925 70695068 -78821969 - RSINE1 SINE B4 -19 146 4 2 1124 213 74 0 0 chr6 70695376 70695403 -78821634 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 1124 723 196 0 0 chr6 70695403 70695551 -78821486 + GA-rich Low_complexity Low_complexity 3 150 0 2 1124 448 174 0 11 chr6 70695558 70695645 -78821392 + B4A SINE B4 1 86 -206 2 1124 551 225 139 11 chr6 70695672 70695852 -78821185 + B3 SINE B2 2 204 -12 2 1124 1030 251 89 15 chr6 70695872 70696143 -78820894 + B4 SINE B4 2 292 0 2 1124 411 149 0 0 chr6 70696143 70696217 -78820820 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1124 180 322 117 43 chr6 70696689 70696783 -78820254 + MIR3 SINE MIR 89 189 -19 2 1124 1195 66 40 90 chr6 70696968 70697169 -78819868 + B2_Mm1t SINE B2 2 192 -1 2 1124 279 0 0 0 chr6 70697633 70697664 -78819373 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1124 315 0 0 0 chr6 70698084 70698119 -78818918 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2 1124 369 257 24 54 chr6 70698694 70698829 -78818208 + L1MA4A LINE L1 5677 5795 -505 2 1124 387 0 0 0 chr6 70698852 70698895 -78818142 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1124 563 242 8 0 chr6 70698900 70699024 -78818013 - RSINE1 SINE B4 -38 127 3 2 1124 356 259 89 0 chr6 70699218 70699353 -78817684 + L1MA4A LINE L1 5792 5938 -365 2 1124 1246 41 0 0 chr6 70699497 70699643 -78817394 + B1_Mus2 SINE Alu 2 147 0 2 1124 22 0 0 0 chr6 70701685 70701707 -78815330 + GC_rich Low_complexity Low_complexity 1 22 0 2 1124 821 99 197 0 chr6 70702795 70702937 -78814100 - L1_Mur1 LINE L1 -4418 1468 1299 2 1124 595 203 161 7 chr6 70703481 70703630 -78813407 - ID_B1 SINE B4 0 224 53 2 1124 261 317 98 30 chr6 70703703 70703937 -78813100 - L1M5 LINE L1 -374 5750 5501 2 1124 260 249 93 93 chr6 70704596 70704800 -78812237 + MTEa LTR MaLR 170 373 -6 2 1124 264 188 0 59 chr6 70704787 70704855 -78812182 + MLT1G1 LTR MaLR 235 298 -281 2 1124 2849 41 9 0 chr6 70705528 70705912 -78811125 + L1Md_F2 LINE L1 6217 6582 0 2 1124 405 58 0 0 chr6 70705957 70706009 -78811028 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1124 3154 21 10 65 chr6 70707268 70707681 -78809356 - RLTR10 LTR ERVK 0 390 1 2 1124 17064 27 19 0 chr6 70707681 70709629 -78807408 - RLTR10-int LTR ERVK 0 1987 3 2 1124 3154 21 10 65 chr6 70709631 70710044 -78806993 - RLTR10 LTR ERVK 0 390 1 2 1124 615 249 66 70 chr6 70710062 70710321 -78806716 + L1MB8 LINE L1 5914 6171 -7 2 1124 225 132 0 0 chr6 70710399 70710437 -78806600 + (GGGA)n Simple_repeat Simple_repeat 2 39 0 2 1124 357 43 0 0 chr6 70710437 70710484 -78806553 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 2 1124 613 254 55 28 chr6 70710489 70710671 -78806366 + B3A SINE B2 1 187 -11 3 1124 253 214 42 14 chr6 70711276 70711347 -78805690 + MER3 DNA MER1_type 40 112 -97 3 1124 1164 96 0 6 chr6 70711370 70711538 -78805499 + B2_Mm2 SINE B2 2 168 -27 3 1124 21 82 0 14 chr6 70711570 70711623 -78805414 + AT_rich Low_complexity Low_complexity 1 53 0 3 1124 1392 72 17 0 chr6 70711623 70711803 -78805234 + B2_Mm1a SINE B2 2 184 -9 3 1124 21 82 0 14 chr6 70711803 70711823 -78805214 + AT_rich Low_complexity Low_complexity 1 20 0 3 1124 592 71 0 0 chr6 70712214 70712298 -78804739 + L1_Mus1 LINE L1 6481 6564 -3 3 1124 741 307 69 32 chr6 70713011 70713388 -78803649 + MER90a LTR ERV1 34 424 -190 3 1124 587 241 77 39 chr6 70714150 70714331 -78802706 + B3A SINE B2 9 196 -2 3 1124 578 124 190 0 chr6 70714345 70714466 -78802571 - B1_Mur3 SINE Alu 0 149 6 3 1124 657 146 123 0 chr6 70714971 70715101 -78801936 - B1_Mm SINE Alu -1 146 1 3 1124 39 60 0 0 chr6 70716299 70716366 -78800671 + AT_rich Low_complexity Low_complexity 1 67 0 3 1124 317 246 167 0 chr6 70717016 70717142 -78799895 + L1M5 LINE L1 5213 5359 -787 3 1124 331 189 178 0 chr6 70717216 70717306 -78799731 + B4A SINE B4 116 221 -71 3 1124 209 328 0 0 chr6 70717330 70717388 -78799649 + (CATG)n Simple_repeat Simple_repeat 3 60 0 3 1124 1112 98 32 5 chr6 70717638 70717823 -78799214 - B2_Mm2 SINE B2 -4 191 2 3 1124 666 181 286 6 chr6 70717851 70718012 -78799025 + B3 SINE B2 1 206 -10 3 1124 198 0 0 0 chr6 70719248 70719270 -78797767 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1124 653 124 65 3 chr6 70719270 70719405 -78797632 + B1_Mur4 SINE Alu 7 145 -5 3 1124 428 294 24 0 chr6 70719443 70719569 -78797468 - ID_B1 SINE B4 -11 213 85 3 1124 288 303 63 7 chr6 70719657 70719800 -78797237 - MIR SINE MIR -104 158 8 3 1124 789 176 83 22 chr6 70720076 70720256 -78796781 + B3A SINE B2 1 191 -7 3 1124 410 222 29 29 chr6 70721650 70721665 -78795372 + ID SINE ID 70 84 -140 3 1124 428 218 109 0 chr6 70721665 70721766 -78795271 + PB1D10 SINE Alu 1 112 -37 3 1124 283 250 0 15 chr6 70722055 70722120 -78794917 + ID4_ SINE ID 4 67 -16 3 1124 257 60 60 0 chr6 70722116 70722166 -78794871 - B2_Mm2 SINE B2 -1 194 142 3 1124 1143 122 35 0 chr6 70722234 70722406 -78794631 - B2_Mm1t SINE B2 -14 179 2 3 1124 703 283 87 64 chr6 70722636 70722678 -78794359 + RMER5 LTR ERV1 230 268 -266 3 1124 856 132 39 0 chr6 70722678 70722807 -78794230 + B1_Mur4 SINE Alu 5 138 -12 3 1124 703 283 87 64 chr6 70722807 70723062 -78793975 + RMER5 LTR ERV1 269 534 0 3 1124 585 52 0 0 chr6 70723263 70723340 -78793697 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1124 338 324 66 61 chr6 70725415 70725596 -78791441 + MER106A DNA MER1_type 1 182 -54 3 1124 5645 28 5 0 chr6 70725604 70726258 -78790779 + L1Md_F3 LINE L1 5928 6584 0 3 1124 225 0 0 0 chr6 70727217 70727242 -78789795 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1124 414 151 0 0 chr6 70727254 70727327 -78789710 + CT-rich Low_complexity Low_complexity 1 73 0 3 1124 305 293 43 47 chr6 70727653 70727782 -78789255 + PB1D10 SINE Alu 29 148 -1 3 1124 292 261 0 0 chr6 70727782 70727847 -78789190 + ID4 SINE ID 3 67 -16 3 1124 1098 288 49 91 chr6 70728071 70728133 -78788904 - RLTR18B LTR ERVK -6 506 459 3 1124 911 93 210 6 chr6 70728133 70728295 -78788742 + B2_Mm2 SINE B2 1 195 0 3 1124 1098 288 49 91 chr6 70728295 70728760 -78788277 - RLTR18B LTR ERVK -54 458 1 3 1124 1633 201 70 23 chr6 70728760 70729157 -78787880 + Lx7 LINE L1 754 1169 -6559 3 1124 9559 134 69 41 chr6 70729132 70730334 -78786703 + Lx7 LINE L1 3884 5092 -788 3 1124 1219 28 14 0 chr6 70730334 70730477 -78786560 + B1_Mm SINE Alu 3 147 0 3 1124 9559 134 69 41 chr6 70730477 70731175 -78785862 + Lx7 LINE L1 5093 5837 -43 3 1124 459 219 64 21 chr6 70731208 70731348 -78785689 - RMER1C Other Other -1 1341 1196 3 1124 432 160 13 0 chr6 70731349 70731424 -78785613 + Lx7 LINE L1 5823 5898 -1798 3 1124 4703 142 82 168 chr6 70731424 70732630 -78784407 + RLTR25A LTR ERVK 1 1103 0 3 1124 513 224 158 5 chr6 70732630 70732832 -78784205 + Lx7 LINE L1 5893 6125 -1571 3 1124 545 185 53 53 chr6 70733266 70733380 -78783657 + PB1D9 SINE Alu 1 114 -6 3 1124 340 248 86 56 chr6 70733777 70733939 -78783098 - MIRb SINE MIR -12 256 90 3 1124 1750 33 26 0 chr6 70733939 70734183 -78782854 - MT2_Mm LTR ERVL -203 272 1 3 1124 319 0 0 0 chr6 70734183 70734221 -78782816 - MERVL-int LTR ERVL 0 5485 5448 3 1124 364 125 26 53 chr6 70734221 70734297 -78782740 - ORR1A3-int LTR MaLR -1323 640 567 3 1124 355 159 91 0 chr6 70734297 70734385 -78782652 - MERVL-int LTR ERVL -114 5371 5276 3 1124 642 163 89 0 chr6 70734424 70734547 -78782490 - B1_Mus1 SINE Alu -10 138 5 3 1124 180 158 0 0 chr6 70735964 70736002 -78781035 + G-rich Low_complexity Low_complexity 2 39 0 3 1124 1350 142 32 5 chr6 70736884 70737103 -78779934 + URR1A DNA MER1_type 2 226 0 3 1124 1210 55 0 20 chr6 70738186 70738335 -78778702 - B1_Mus2 SINE Alu 0 147 2 3 1124 687 166 66 22 chr6 70738774 70738910 -78778127 - B1_Mur2 SINE Alu -6 143 2 3 1124 806 231 0 0 chr6 70739652 70739799 -78777238 + B1_Mur2 SINE Alu 2 148 -1 3 1124 227 263 53 0 chr6 70740315 70740372 -78776665 + PB1D9 SINE Alu 1 60 -60 3 1124 394 233 154 0 chr6 70740374 70740472 -78776565 + B1_Mur2 SINE Alu 1 109 -8 3 1124 33 25 0 0 chr6 70742050 70742090 -78774947 + GC_rich Low_complexity Low_complexity 1 40 0 3 1124 259 204 0 0 chr6 70742634 70742678 -78774359 - RSINE1 SINE B4 -31 134 91 3 1124 284 184 37 73 chr6 70742964 70743046 -78773991 - B1F SINE Alu -19 130 52 3 1124 652 189 29 36 chr6 70743091 70743228 -78773809 - B1_Mur4 SINE Alu 0 150 15 3 1124 189 107 0 0 chr6 70743400 70743428 -78773609 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1124 1818 166 127 17 chr6 70743550 70743912 -78773125 - MTC LTR MaLR -9 412 11 3 1124 218 282 14 0 chr6 70744105 70744176 -78772861 - B1F SINE Alu -16 133 62 3 1124 509 202 9 9 chr6 70744464 70744574 -78772463 + B1_Mur1 SINE Alu 40 149 0 3 1124 542 254 92 16 chr6 70744578 70744762 -78772275 + B3A SINE B2 1 198 0 3 1124 385 285 85 72 chr6 70744837 70745072 -78771965 - MTE-int LTR MaLR -26 1709 1343 3 1124 1433 12 6 0 chr6 70745072 70745240 -78771797 + L1Md_A LINE L1 6413 6581 -1 3 1124 192 40 0 0 chr6 70745247 70745272 -78771765 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 1124 1636 239 34 11 chr6 70745272 70745645 -78771392 - MTE-int LTR MaLR -420 1543 984 3 1124 384 211 20 31 chr6 70745714 70745812 -78771225 + RLTR42-int LTR ERVK 1240 1336 -4186 3 1124 707 190 80 0 chr6 70745828 70745965 -78771072 + B1_Mur4 SINE Alu 3 150 0 3 1124 431 226 56 19 chr6 70746120 70746147 -78770890 + ID SINE ID 50 80 -144 3 1124 630 107 0 1 chr6 70746147 70746235 -78770802 + B1_Mus2 SINE Alu 1 88 -32 3 1124 1119 129 0 0 chr6 70746235 70746413 -78770624 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 1124 494 200 18 37 chr6 70746413 70746433 -78770604 + PB1D7 SINE Alu 89 107 -13 3 1124 2768 254 160 11 chr6 70746700 70747544 -78769493 - MTE-int LTR MaLR -591 989 20 3 1124 894 247 154 46 chr6 70747584 70747890 -78769147 - MTEb LTR MaLR -40 339 1 3 1124 406 238 40 0 chr6 70748259 70748360 -78768677 - PB1D9 SINE Alu -6 114 10 3 1124 180 0 0 0 chr6 70748398 70748418 -78768619 + (TTG)n Simple_repeat Simple_repeat 1 20 0 3 1124 793 182 0 59 chr6 70748984 70749153 -78767884 + Lx4B LINE L1 6891 7049 -9 3 1124 956 132 6 0 chr6 70749177 70749343 -78767694 + (GGGA)n Simple_repeat Simple_repeat 2 168 0 3 1124 534 232 32 0 chr6 70749443 70749568 -78767469 + RSINE1 SINE B4 2 130 -35 3 1124 261 0 0 0 chr6 70749613 70749642 -78767395 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 1124 3161 299 72 91 chr6 70749771 70750318 -78766719 - L1_Mur3 LINE L1 -1346 4534 3956 3 1124 3642 31 28 9 chr6 70750318 70750746 -78766291 - RLTR10C LTR ERVK 0 436 1 3 1124 3161 299 72 91 chr6 70750746 70750831 -78766206 - L1_Mur3 LINE L1 -1925 3955 3878 3 1124 769 130 121 8 chr6 70750831 70750963 -78766074 + B1_Mur3 SINE Alu 2 148 -1 3 1124 3161 299 72 91 chr6 70750963 70751226 -78765811 - L1_Mur3 LINE L1 -2003 3877 3738 3 1124 1168 54 0 39 chr6 70751226 70751380 -78765657 - B1_Mus1 SINE Alu 0 148 1 3 1124 3161 299 72 91 chr6 70751380 70752803 -78764234 - L1_Mur3 LINE L1 -2143 3737 2257 3 1124 1035 170 212 39 chr6 70752812 70753101 -78763936 + RMER19B LTR ERVK 71 594 -308 3 1124 372 239 60 0 chr6 70753106 70753223 -78763814 + RLTR28B LTR ERVL 214 337 -144 3 1124 296 164 0 141 chr6 70753225 70753262 -78763775 - B2_Mm1t SINE B2 -1 192 163 3 1124 213 39 0 0 chr6 70753262 70753288 -78763749 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1124 296 164 0 141 chr6 70753288 70753335 -78763702 - B2_Mm1t SINE B2 -31 162 120 3 1124 246 284 57 0 chr6 70753399 70753487 -78763550 - L1_Mur3 LINE L1 -4483 1397 1305 3 1124 322 281 156 7 chr6 70753494 70753648 -78763389 - L1M4b LINE L1 -5675 1659 1483 3 1124 529 174 0 21 chr6 70754587 70754681 -78762356 - B1_Mur2 SINE Alu -1 148 57 3 1124 217 109 21 21 chr6 70755132 70755179 -78761858 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 1124 974 138 0 0 chr6 70755180 70755325 -78761712 - B1_Mus2 SINE Alu -1 146 2 3 1124 213 39 0 0 chr6 70755539 70755565 -78761472 + (C)n Simple_repeat Simple_repeat 1 26 0 3 1124 632 240 211 51 chr6 70755819 70756071 -78760966 - B4A SINE B4 -10 282 1 3 1124 265 297 0 13 chr6 70756073 70756148 -78760889 + MER20 DNA MER1_type 58 131 -88 3 1124 1785 159 16 88 chr6 70756618 70757060 -78759977 - RMER17C LTR ERVK 0 410 1 3 1124 231 114 0 0 chr6 70757110 70757154 -78759883 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1124 286 219 134 0 chr6 70757395 70757477 -78759560 + MLT1A1 LTR MaLR 304 396 -12 3 1124 2525 160 19 103 chr6 70757820 70758281 -78758756 - RLTR28 LTR ERVL 0 524 87 3 1124 676 22 22 0 chr6 70758281 70758371 -78758666 + (GTTTG)n Simple_repeat Simple_repeat 3 94 0 3 1124 2525 160 19 103 chr6 70758371 70758481 -78758556 - RLTR28 LTR ERVL -438 86 1 3 1124 567 250 48 18 chr6 70758910 70759077 -78757960 + RMER30 DNA MER1_type 14 185 -17 3 1124 425 314 120 60 chr6 70759185 70759534 -78757503 - ORR1E LTR MaLR 0 370 1 3 1124 400 214 51 0 chr6 70759699 70759797 -78757240 + L1MD LINE L1 5084 5186 -960 4 1124 687 84 0 0 chr6 70759827 70759922 -78757115 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 4 1124 1108 93 31 0 chr6 70760086 70760248 -78756789 + B2_Mm2 SINE B2 15 181 -14 4 1124 1157 82 0 7 chr6 70760273 70760421 -78756616 - B1_Mus1 SINE Alu 0 148 2 4 1124 351 0 0 0 chr6 70760432 70760471 -78756566 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1124 885 139 14 14 chr6 70760493 70760632 -78756405 + B1_Mur3 SINE Alu 11 149 0 4 1124 823 211 94 0 chr6 70760641 70760812 -78756225 + B3A SINE B2 5 191 -7 4 1124 407 246 8 16 chr6 70760851 70760975 -78756062 + L1MD LINE L1 5333 5455 -787 4 1124 762 167 0 16 chr6 70760983 70761111 -78755926 + B1_Mur1 SINE Alu 24 149 0 4 1124 491 101 0 12 chr6 70761123 70761203 -78755834 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 4 1124 364 9 0 0 chr6 70761221 70761267 -78755770 - ORR1D2 LTR MaLR 0 374 325 4 1124 270 0 0 0 chr6 70761305 70761335 -78755702 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1124 917 142 24 17 chr6 70761335 70761615 -78755422 + CT-rich Low_complexity Low_complexity 1 281 0 4 1124 226 234 165 25 chr6 70761643 70761722 -78755315 - ORR1D2 LTR MaLR -47 323 234 4 1124 504 0 0 0 chr6 70762347 70762403 -78754634 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1124 600 197 111 22 chr6 70763094 70763229 -78753808 + B1_Mus2 SINE Alu 1 147 0 4 1124 256 159 16 16 chr6 70763231 70763295 -78753742 + A-rich Low_complexity Low_complexity 3 66 0 4 1124 314 247 19 114 chr6 70763296 70763401 -78753636 + B1_Mur1 SINE Alu 43 137 -12 4 1124 837 185 7 0 chr6 70763597 70763743 -78753294 + B1_Mur2 SINE Alu 3 149 0 4 1124 801 306 31 4 chr6 70764347 70764606 -78752431 + B4A SINE B4 8 273 -19 4 1124 916 262 90 32 chr6 70764535 70764846 -78752191 + RMER15 LTR ERVL 245 573 -2 4 1124 1196 55 0 0 chr6 70765168 70765314 -78751723 + B1_Mus2 SINE Alu 1 146 -1 4 1124 365 257 65 14 chr6 70765963 70766101 -78750936 + MER5A1 DNA MER1_type 22 166 0 4 1124 1455 51 17 0 chr6 70767249 70767426 -78749611 + B2_Mm2 SINE B2 2 181 -14 4 1124 642 215 48 58 chr6 70767579 70767767 -78749270 + B2_Mm2 SINE B2 1 186 -9 4 1124 495 297 94 18 chr6 70767785 70768008 -78749029 + L1MA5 LINE L1 5786 6025 -275 4 1124 247 157 0 56 chr6 70768065 70768119 -78748918 - Lx8 LINE L1 -7 7466 7416 4 1124 569 309 77 5 chr6 70768126 70768334 -78748703 - ID_B1 SINE B4 0 224 2 4 1124 1421 91 16 0 chr6 70768361 70768548 -78748489 + B2_Mm2 SINE B2 1 190 -5 4 1124 740 271 151 21 chr6 70769052 70769331 -78747706 + MLT2D LTR ERVL 21 335 -79 4 1124 495 309 41 93 chr6 70769331 70769655 -78747382 + B4 SINE B4 1 267 -25 4 1124 587 257 77 17 chr6 70769675 70769923 -78747114 + L1MA5 LINE L1 5667 5995 -161 4 1124 198 0 0 0 chr6 70770176 70770198 -78746839 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 1124 360 0 0 0 chr6 70770198 70770237 -78746800 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1124 1097 64 43 0 chr6 70770333 70770474 -78746563 + B1_Mus1 SINE Alu 2 148 0 4 1124 219 139 0 0 chr6 70770474 70770510 -78746527 + (GAA)n Simple_repeat Simple_repeat 2 37 0 4 1124 1357 92 27 0 chr6 70770867 70771052 -78745985 - B2_Mm1a SINE B2 -2 191 2 4 1124 523 247 128 32 chr6 70771060 70771248 -78745789 - Lx8 LINE L1 -18 7455 7250 4 1124 1048 37 80 7 chr6 70771320 70771457 -78745580 - B1_Mm SINE Alu 0 147 1 4 1124 330 241 152 36 chr6 70771815 70771927 -78745110 - RMER20B LTR ERVK -502 125 1 4 1124 244 228 18 0 chr6 70772288 70772345 -78744692 - RMER6B LTR ERVK -36 425 368 4 1124 840 224 12 36 chr6 70773003 70773170 -78743867 + RSINE1 SINE B4 3 165 0 4 1124 1353 87 5 16 chr6 70773487 70773674 -78743363 + B2_Mm1a SINE B2 4 188 -5 4 1124 762 229 7 14 chr6 70773899 70774045 -78742992 + ID_B1 SINE B4 1 145 -79 4 1124 574 209 18 0 chr6 70775175 70775198 -78741839 + ID SINE ID 58 82 -142 4 1124 282 270 41 82 chr6 70775198 70775295 -78741742 + PB1 SINE Alu 1 93 -34 4 1124 501 17 0 0 chr6 70775295 70775353 -78741684 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1124 233 22 42 42 chr6 70775383 70775431 -78741606 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1124 443 115 0 0 chr6 70775432 70775493 -78741544 - B3 SINE B2 -154 62 2 4 1124 900 200 52 24 chr6 70775862 70776072 -78740965 + B3 SINE B2 1 216 0 4 1124 289 250 20 59 chr6 70776217 70776319 -78740718 + MLT1N2 LTR MaLR 462 559 -3 4 1124 395 319 53 46 chr6 70776491 70776642 -78740395 + MTEa LTR MaLR 20 171 -208 4 1124 722 255 82 30 chr6 70777173 70777440 -78739597 + B4A SINE B4 1 281 -11 4 1124 2048 168 48 0 chr6 70777475 70777832 -78739205 - ORR1D1 LTR MaLR 0 374 1 4 1124 882 329 84 5 chr6 70777833 70778249 -78738788 - MER68 LTR ERVL -107 456 8 4 1124 264 21 61 20 chr6 70778322 70778371 -78738666 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1124 890 121 14 21 chr6 70778636 70778780 -78738257 + B1_Mus1 SINE Alu 4 146 -2 4 1125 256 262 95 0 chr6 70778927 70779011 -78738026 + MER5B DNA MER1_type 78 169 -9 4 1125 210 320 74 47 chr6 70779692 70779882 -78737155 - L2c LINE L2 -70 3317 3123 4 1125 280 293 0 51 chr6 70780464 70780543 -78736494 + ID2 SINE ID 3 77 -6 4 1125 192 179 0 0 chr6 70780774 70780813 -78736224 + GA-rich Low_complexity Low_complexity 2 40 0 4 1125 291 186 0 0 chr6 70781759 70781818 -78735219 - PB1D9 SINE Alu -57 63 5 4 1125 574 237 159 22 chr6 70781871 70782009 -78735028 + B3 SINE B2 5 161 -55 4 1125 379 292 0 54 chr6 70782105 70782171 -78734866 + B3A SINE B2 3 65 -133 4 1125 2995 18 33 0 chr6 70782171 70782506 -78734531 + ORR1A0 LTR MaLR 1 346 0 4 1125 379 292 0 54 chr6 70782506 70782551 -78734486 + B3A SINE B2 66 108 -90 4 1125 405 0 0 0 chr6 70782556 70782601 -78734436 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1125 1548 312 92 27 chr6 70782619 70782943 -78734094 + L1_Mur3 LINE L1 1427 1784 -4063 4 1125 189 0 0 0 chr6 70782943 70782964 -78734073 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1125 1548 312 92 27 chr6 70782964 70783901 -78733136 + L1_Mur3 LINE L1 1778 2821 -3026 4 1125 377 224 239 19 chr6 70783921 70784076 -78732961 - L1M4 LINE L1 -470 5714 5526 4 1125 279 0 0 0 chr6 70784237 70784268 -78732769 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1125 256 313 71 96 chr6 70784498 70784738 -78732299 - L1MEg LINE L1 -5766 318 85 4 1125 439 277 115 13 chr6 70785338 70785495 -78731542 - B3A SINE B2 -14 184 12 4 1125 871 161 35 0 chr6 70785547 70785690 -78731347 + B1_Mus1 SINE Alu 1 148 0 4 1125 576 248 15 0 chr6 70786389 70786526 -78730511 + B3 SINE B2 2 140 -76 4 1125 288 256 0 0 chr6 70786533 70786619 -78730418 + G-rich Low_complexity Low_complexity 1 86 0 4 1125 1206 100 0 0 chr6 70786639 70786819 -78730218 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1125 250 257 129 0 chr6 70786847 70786917 -78730120 - PB1D10 SINE Alu -37 80 2 4 1125 631 228 16 0 chr6 70787049 70787176 -78729861 + Lx9 LINE L1 6537 6665 -979 4 1125 368 224 71 10 chr6 70787201 70787300 -78729737 + B3 SINE B2 106 210 -6 4 1125 320 282 19 79 chr6 70787310 70787488 -78729549 - L1M5 LINE L1 -531 5648 5471 4 1125 225 0 0 0 chr6 70787577 70787602 -78729435 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 1125 1216 48 0 0 chr6 70787615 70787761 -78729276 - B1_Mm SINE Alu 0 147 2 4 1125 1366 74 26 21 chr6 70787764 70787957 -78729080 - B2_Mm2 SINE B2 -1 194 1 4 1125 321 140 0 0 chr6 70788022 70788079 -78728958 + (TCC)n Simple_repeat Simple_repeat 2 58 0 4 1125 456 180 43 28 chr6 70788083 70788202 -78728835 - B1_Mur2 SINE Alu -2 147 1 4 1125 627 14 0 0 chr6 70788266 70788338 -78728699 + (GAGAA)n Simple_repeat Simple_repeat 4 75 0 4 1125 680 174 12 153 chr6 70788340 70788510 -78728527 + B1F2 SINE Alu 4 149 0 4 1125 2108 203 57 131 chr6 70788598 70789279 -78727758 + RMER1B Other Other 415 1045 -21 4 1125 251 309 7 109 chr6 70789279 70789417 -78727620 + MT2B LTR ERVL 127 250 -351 4 1125 374 230 29 39 chr6 70789331 70789435 -78727602 + PB1D9 SINE Alu 12 114 -6 4 1125 561 281 18 24 chr6 70789523 70789540 -78727497 - RSINE1 SINE B4 -1 164 148 4 1125 180 0 0 0 chr6 70789540 70789560 -78727477 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1125 561 281 18 24 chr6 70789560 70789706 -78727331 - RSINE1 SINE B4 -18 147 2 4 1125 23 0 0 0 chr6 70790639 70790662 -78726375 + AT_rich Low_complexity Low_complexity 1 23 0 4 1125 235 287 64 0 chr6 70791420 70791514 -78725523 - L2a LINE L2 -196 3230 3131 4 1125 464 315 36 24 chr6 70791555 70791721 -78725316 + MLT1B LTR MaLR 1 168 -222 4 1125 704 263 10 16 chr6 70791735 70791939 -78725098 + B3A SINE B2 7 215 -1 4 1125 369 0 0 0 chr6 70791978 70792019 -78725018 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 4 1125 1016 236 78 43 chr6 70792110 70792456 -78724581 - Lx7 LINE L1 -284 7412 7055 4 1125 1680 271 40 19 chr6 70792449 70792923 -78724114 + Lx7 LINE L1 6592 7075 -621 4 1125 300 297 93 7 chr6 70792944 70793083 -78723954 + MLT1B LTR MaLR 162 312 -78 4 1125 190 257 166 20 chr6 70793329 70793480 -78723557 - L2a LINE L2 -1429 1990 1818 4 1125 183 259 17 17 chr6 70793787 70793846 -78723191 + MIR SINE MIR 82 140 -68 4 1125 22 35 0 0 chr6 70794724 70794753 -78722284 + GC_rich Low_complexity Low_complexity 1 29 0 4 1125 246 314 12 98 chr6 70795391 70795564 -78721473 + MER5A1 DNA MER1_type 4 161 -5 4 1125 354 45 0 0 chr6 70796452 70796496 -78720541 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1125 310 246 119 0 chr6 70796505 70796623 -78720414 + MER5A1 DNA MER1_type 29 160 -6 5 1125 1135 40 27 0 chr6 70799194 70799342 -78717695 + L1Md_F2 LINE L1 6427 6578 -4 5 1125 268 295 0 0 chr6 70799381 70799442 -78717595 - PB1D10 SINE Alu -30 87 27 5 1125 346 267 69 0 chr6 70799445 70799546 -78717491 - PB1D10 SINE Alu 0 117 10 5 1125 1039 168 36 16 chr6 70800621 70800814 -78716223 + B3 SINE B2 17 213 -3 5 1125 344 327 103 66 chr6 70800835 70801107 -78715930 + B4 SINE B4 3 284 -8 5 1125 411 38 0 0 chr6 70801115 70801168 -78715869 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1125 267 31 0 0 chr6 70801168 70801199 -78715838 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1125 26 0 0 0 chr6 70801199 70801225 -78715812 + AT_rich Low_complexity Low_complexity 1 26 0 5 1125 276 274 80 45 chr6 70801431 70801519 -78715518 + ID_B1 SINE B4 81 171 -53 5 1125 1173 96 15 65 chr6 70801660 70801861 -78715176 - B2_Mm1t SINE B2 -1 192 2 5 1125 538 248 8 0 chr6 70801893 70802018 -78715019 + RSINE1 SINE B4 4 129 -36 5 1125 25 0 0 0 chr6 70802056 70802081 -78714956 + AT_rich Low_complexity Low_complexity 1 25 0 5 1125 1437 75 11 0 chr6 70802459 70802645 -78714392 + B2_Mm1t SINE B2 2 189 -4 5 1125 1041 122 0 0 chr6 70803116 70803264 -78713773 + B1_Mus1 SINE Alu 1 148 0 5 1125 183 156 0 0 chr6 70803272 70803304 -78713733 + GA-rich Low_complexity Low_complexity 1 32 0 5 1125 243 0 0 0 chr6 70803304 70803331 -78713706 + (CAG)n Simple_repeat Simple_repeat 2 28 0 5 1125 336 258 52 44 chr6 70803528 70803664 -78713373 + B3A SINE B2 81 215 -1 5 1125 538 138 84 11 chr6 70803701 70803796 -78713241 - PB1D9 SINE Alu -18 102 1 5 1125 239 278 0 40 chr6 70803841 70803916 -78713121 + B4A SINE B4 219 290 -2 5 1125 23 33 0 0 chr6 70803916 70803946 -78713091 + AT_rich Low_complexity Low_complexity 1 30 0 5 1125 397 211 112 16 chr6 70804661 70804786 -78712251 - B1F2 SINE Alu 0 149 13 5 1125 304 299 91 42 chr6 70804948 70805091 -78711946 - RSINE1 SINE B4 0 165 16 5 1125 297 128 0 0 chr6 70805578 70805625 -78711412 + (A)n Simple_repeat Simple_repeat 1 47 0 5 1125 296 261 269 0 chr6 70805625 70805759 -78711278 - L2 LINE L2 -1079 2340 2171 5 1125 1281 209 101 111 chr6 70805861 70806203 -78710834 - Lx9 LINE L1 -154 7490 7134 5 1125 1087 76 21 0 chr6 70806203 70806347 -78710690 - B1_Mus1 SINE Alu 0 148 2 5 1125 1281 209 101 111 chr6 70806347 70806498 -78710539 - Lx9 LINE L1 -511 7133 7002 5 1125 633 159 165 8 chr6 70806510 70806637 -78710400 + B1_Mur4 SINE Alu 4 150 0 5 1125 580 220 33 72 chr6 70806654 70806806 -78710231 + B1_Mus2 SINE Alu 1 146 -1 5 1125 324 314 39 0 chr6 70807145 70807247 -78709790 - PB1D10 SINE Alu -11 106 1 5 1125 303 231 30 12 chr6 70807295 70807402 -78709635 - MLT1A0 LTR MaLR -17 450 279 5 1125 22 0 0 0 chr6 70807435 70807457 -78709580 + AT_rich Low_complexity Low_complexity 1 22 0 5 1125 189 319 138 28 chr6 70807625 70807770 -78709267 - L2 LINE L2 -2676 743 583 5 1125 297 191 185 67 chr6 70807877 70808012 -78709025 + B4A SINE B4 6 156 -136 5 1125 342 301 71 24 chr6 70808066 70808277 -78708760 - L2 LINE L2 -3053 366 146 5 1125 260 319 11 8 chr6 70808573 70808677 -78708360 + MIR SINE MIR 107 207 -61 5 1125 441 0 0 0 chr6 70808908 70808957 -78708080 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1125 548 250 20 46 chr6 70809004 70809155 -78707882 - RSINE1 SINE B4 -16 149 3 5 1125 843 131 77 35 chr6 70809954 70810097 -78706940 + B1_Mur4 SINE Alu 2 150 0 5 1125 591 250 31 25 chr6 70810426 70810586 -78706451 + RSINE1 SINE B4 3 163 -2 5 1125 779 226 9 76 chr6 70810611 70810822 -78706215 - B3A SINE B2 0 198 2 5 1125 443 237 101 22 chr6 70811092 70811230 -78705807 - B1F SINE Alu 0 149 1 5 1125 25 0 0 0 chr6 70811243 70811268 -78705769 + AT_rich Low_complexity Low_complexity 1 25 0 5 1125 378 225 33 35 chr6 70811268 70811377 -78705660 + B1_Mur1 SINE Alu 45 147 0 5 1125 629 195 0 25 chr6 70811520 70811641 -78705396 - PB1D9 SINE Alu 0 120 3 5 1125 274 239 265 0 chr6 70811688 70811734 -78705303 + B1F1 SINE Alu 2 149 0 5 1125 302 225 28 0 chr6 70811734 70811805 -78705232 + ID_B1 SINE B4 152 224 0 5 1125 327 190 25 12 chr6 70811826 70811906 -78705131 - Charlie1a DNA MER1_type -356 1099 1019 5 1125 705 197 7 7 chr6 70812001 70812139 -78704898 - B1_Mur2 SINE Alu 0 149 12 5 1125 863 204 20 56 chr6 70812146 70812343 -78704694 - B3A SINE B2 -7 191 2 5 1125 1077 31 0 0 chr6 70812510 70812639 -78704398 + (GGTTG)n Simple_repeat Simple_repeat 4 132 0 5 1125 590 308 148 5 chr6 70812719 70813098 -78703939 - Charlie1a DNA MER1_type -753 702 270 5 1125 240 86 0 0 chr6 70813142 70813177 -78703860 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 5 1125 391 247 20 20 chr6 70813226 70813325 -78703712 - PB1D10 SINE Alu -17 100 2 5 1125 344 269 0 0 chr6 70813335 70813402 -78703635 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 5 1125 234 0 0 0 chr6 70813426 70813452 -78703585 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1125 296 234 16 0 chr6 70813452 70813516 -78703521 - PB1D9 SINE Alu -10 110 46 5 1125 329 360 18 0 chr6 70813533 70813647 -78703390 + PB1D10 SINE Alu 2 117 0 5 1125 308 303 0 76 chr6 70813672 70813790 -78703247 + ID_B1 SINE B4 109 217 -7 5 1125 233 98 24 0 chr6 70813797 70813838 -78703199 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 1125 596 336 107 8 chr6 70813872 70814115 -78702922 + B4A SINE B4 25 291 -1 5 1125 528 174 74 114 chr6 70814904 70815053 -78701984 + RSINE1 SINE B4 23 165 0 5 1125 709 203 22 8 chr6 70815095 70815229 -78701808 + B1_Mur1 SINE Alu 2 137 -12 5 1125 396 0 0 0 chr6 70815304 70815348 -78701689 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 1125 519 252 0 10 chr6 70815813 70815917 -78701120 + PB1D10 SINE Alu 1 103 -14 5 1125 240 135 0 161 chr6 70816076 70816138 -78700899 + B1F SINE Alu 97 148 -1 5 1125 905 226 226 3 chr6 70816185 70816491 -78700546 + MTD LTR MaLR 46 419 0 5 1125 652 206 227 6 chr6 70816555 70816731 -78700306 + B3 SINE B2 2 216 0 5 1125 338 242 61 0 chr6 70816850 70816949 -78700088 - B1F SINE Alu -43 106 2 5 1125 420 235 0 0 chr6 70817272 70817434 -78699603 + (TG)n Simple_repeat Simple_repeat 1 162 0 5 1125 269 234 59 94 chr6 70817434 70817604 -78699433 - RSINE1 SINE B4 0 165 2 5 1125 2714 64 5 44 chr6 70817631 70818021 -78699016 - L1_Mus4 LINE L1 -1 6635 6261 5 1125 812 218 76 20 chr6 70818350 70818547 -78698490 + ID_B1 SINE B4 3 210 -14 5 1125 252 198 259 0 chr6 70818637 70818718 -78698319 + B3A SINE B2 6 107 -91 5 1125 869 194 76 19 chr6 70819160 70819370 -78697667 - ID_B1 SINE B4 -2 222 1 5 1125 606 261 7 7 chr6 70819673 70819808 -78697229 + RSINE1 SINE B4 3 137 -28 5 1125 247 253 0 153 chr6 70820792 70820890 -78696147 - MER58B DNA MER1_type 0 341 259 5 1125 962 211 65 10 chr6 70821186 70821387 -78695650 + B3 SINE B2 5 216 0 5 1125 561 192 0 9 chr6 70823185 70823290 -78693747 + B3 SINE B2 2 105 -111 5 1125 241 326 105 35 chr6 70823290 70823328 -78693709 + ID_B1 SINE B4 2 154 -70 5 1125 316 164 16 16 chr6 70823435 70823497 -78693540 + B1F SINE Alu 80 141 -8 5 1125 226 274 65 19 chr6 70823508 70823616 -78693421 - L1MC4 LINE L1 -768 7274 7162 5 1125 969 166 57 0 chr6 70824122 70824315 -78692722 + B3 SINE B2 2 205 -11 5 1125 746 184 73 0 chr6 70825725 70825861 -78691176 + B1_Mus2 SINE Alu 1 146 -1 5 1125 1200 59 1 0 chr6 70825898 70826062 -78690975 + B2_Mm2 SINE B2 2 166 -27 5 1125 267 31 0 0 chr6 70826062 70826094 -78690943 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 5 1125 967 172 21 0 chr6 70826094 70826115 -78690922 + B2_Mm1t SINE B2 167 190 -3 5 1125 182 102 49 33 chr6 70826360 70826421 -78690616 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 5 1125 366 179 83 0 chr6 70826919 70827003 -78690034 - B1_Mur1 SINE Alu -10 139 49 5 1125 1482 33 50 0 chr6 70827596 70827776 -78689261 + B2_Mm2 SINE B2 1 189 -6 5 1125 815 135 23 0 chr6 70828450 70828583 -78688454 + B1_Mur4 SINE Alu 14 149 -1 5 1125 647 210 8 8 chr6 70828602 70828727 -78688310 + B1_Mur3 SINE Alu 2 126 -23 5 1125 226 230 40 13 chr6 70828747 70828822 -78688215 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 5 1125 1258 34 0 0 chr6 70829148 70829296 -78687741 - B1_Mus1 SINE Alu 0 148 1 5 1125 2421 165 42 16 chr6 70829327 70829825 -78687212 - RLTR24 LTR ERV1 0 529 19 5 1125 300 262 12 0 chr6 70830031 70830111 -78686926 - ID2 SINE ID -2 81 1 5 1125 216 0 0 0 chr6 70830597 70830621 -78686416 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 1125 1200 61 0 7 chr6 70831174 70831322 -78685715 + B1_Mus2 SINE Alu 1 147 0 5 1125 637 263 66 48 chr6 70831850 70832076 -78684961 + B4A SINE B4 1 230 -62 5 1125 255 167 0 69 chr6 70832076 70832134 -78684903 + B3A SINE B2 1 54 -144 5 1125 190 53 50 50 chr6 70832151 70832191 -78684846 + GA-rich Low_complexity Low_complexity 2 41 0 5 1125 1134 168 62 0 chr6 70832656 70832865 -78684172 - URR1B DNA MER1_type -2 223 2 5 1125 368 250 36 71 chr6 70833778 70833890 -78683147 + PB1D7 SINE Alu 1 108 -12 5 1125 203 0 37 0 chr6 70833891 70833918 -78683119 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1125 571 227 34 0 chr6 70833922 70834041 -78682996 + B1_Mur1 SINE Alu 20 142 -7 6 1125 741 78 0 10 chr6 70834091 70834195 -78682842 + B1_Mus2 SINE Alu 45 147 0 6 1125 279 308 13 13 chr6 70834389 70834468 -78682569 - RSINE1 SINE B4 -84 81 3 6 1125 263 264 55 14 chr6 70834507 70834580 -78682457 - PB1 SINE Alu -4 123 48 6 1125 937 111 15 15 chr6 70834952 70835089 -78681948 + B1_Mus2 SINE Alu 2 138 -9 6 1125 180 0 0 0 chr6 70835629 70835649 -78681388 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1125 715 228 131 28 chr6 70835693 70835869 -78681168 + B3A SINE B2 3 196 -2 6 1125 445 238 10 10 chr6 70836297 70836399 -78680638 - PB1D7 SINE Alu -5 115 14 6 1125 1268 166 9 14 chr6 70837073 70837293 -78679744 - URR1A DNA MER1_type -7 219 1 6 1125 537 256 82 53 chr6 70837377 70837583 -78679454 + B3 SINE B2 1 212 -4 6 1125 234 0 0 0 chr6 70838487 70838513 -78678524 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 6 1125 227 217 50 0 chr6 70838834 70838894 -78678143 + B1F SINE Alu 7 69 -80 6 1125 256 271 147 54 chr6 70839733 70839838 -78677199 + B4A SINE B4 1 115 -177 6 1125 282 29 0 0 chr6 70839838 70839873 -78677164 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1125 256 271 147 54 chr6 70839873 70839896 -78677141 + B4A SINE B4 116 141 -151 6 1125 352 192 0 73 chr6 70840386 70840626 -78676411 + (TCTCTG)n Simple_repeat Simple_repeat 1 222 0 6 1125 300 198 0 73 chr6 70840640 70840831 -78676206 + (TCTCTG)n Simple_repeat Simple_repeat 1 177 0 6 1125 236 217 0 74 chr6 70840864 70841053 -78675984 + (TCTCTG)n Simple_repeat Simple_repeat 6 180 0 6 1125 807 139 72 7 chr6 70841239 70841377 -78675660 - B1_Mus1 SINE Alu -1 147 1 6 1125 1334 83 44 0 chr6 70841409 70841590 -78675447 + B2_Mm2 SINE B2 1 189 -6 6 1125 948 241 14 9 chr6 70841942 70842156 -78674881 + B3 SINE B2 2 216 0 6 1125 679 153 9 9 chr6 70843398 70843510 -78673527 + PB1D9 SINE Alu 2 113 -7 6 1125 372 119 0 0 chr6 70843510 70843569 -78673468 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1125 705 170 27 0 chr6 70843569 70843681 -78673356 - RSINE1 SINE B4 -41 124 10 6 1125 378 177 0 0 chr6 70844007 70844069 -78672968 + B1F SINE Alu 23 84 -65 6 1125 26 30 0 0 chr6 70844283 70844316 -78672721 + AT_rich Low_complexity Low_complexity 1 33 0 6 1125 269 273 92 76 chr6 70844325 70844363 -78672674 + B1F SINE Alu 29 73 -76 6 1125 340 176 0 29 chr6 70844363 70844433 -78672604 + ID4 SINE ID 2 69 -14 6 1125 269 273 92 76 chr6 70844433 70844513 -78672524 + B1F SINE Alu 74 149 0 6 1125 378 255 0 17 chr6 70845942 70846059 -78670978 + ID_B1 SINE B4 5 206 -18 6 1125 280 259 122 11 chr6 70845980 70846070 -78670967 + B1F SINE Alu 49 148 -1 6 1125 258 243 0 28 chr6 70846307 70846379 -78670658 + L1VL2 LINE L1 119 188 -6147 6 1125 336 24 0 0 chr6 70846733 70846774 -78670263 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1125 22 0 0 0 chr6 70846882 70846904 -78670133 + AT_rich Low_complexity Low_complexity 1 22 0 6 1125 500 254 8 0 chr6 70847255 70847373 -78669664 + PB1D7 SINE Alu 1 119 -1 6 1125 301 160 71 107 chr6 70847882 70847897 -78669140 + RLTR25B LTR ERVK 429 507 -519 6 1125 311 215 0 30 chr6 70847897 70847964 -78669073 + MT2B LTR ERVL 193 257 -344 6 1125 718 40 10 48 chr6 70847904 70848008 -78669029 + B1_Mus2 SINE Alu 43 142 -5 6 1125 1056 78 0 0 chr6 70848155 70848296 -78668741 - B1_Mur4 SINE Alu 0 150 10 6 1125 846 145 283 0 chr6 70848484 70848650 -78668387 + B3 SINE B2 1 213 -3 6 1125 27 49 0 0 chr6 70848837 70848878 -78668159 + AT_rich Low_complexity Low_complexity 1 41 0 6 1125 231 336 159 8 chr6 70849636 70849762 -78667275 - L2b LINE L2 -14 3412 3263 6 1125 301 226 43 94 chr6 70850411 70850528 -78666509 - B3A SINE B2 -4 194 84 6 1125 632 230 7 45 chr6 70850869 70851024 -78666013 + B1_Mur3 SINE Alu 1 149 0 6 1125 526 230 125 54 chr6 70851106 70851290 -78665747 + B3A SINE B2 1 197 -1 6 1125 1178 173 23 9 chr6 70851595 70851811 -78665226 + URR1B DNA MER1_type 7 225 0 6 1125 369 0 0 0 chr6 70852397 70852438 -78664599 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1125 482 250 206 32 chr6 70852485 70852671 -78664366 - B4A SINE B4 0 292 84 6 1125 186 43 0 0 chr6 70852671 70852694 -78664343 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1125 482 250 206 32 chr6 70852694 70852755 -78664282 - B4A SINE B4 -209 83 3 6 1125 403 324 39 0 chr6 70852755 70852857 -78664180 + RSINE1 SINE B4 36 141 -24 6 1125 477 34 0 0 chr6 70852859 70852918 -78664119 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1125 1122 168 24 10 chr6 70853504 70853709 -78663328 - URR1B DNA MER1_type 0 225 18 6 1125 555 16 0 0 chr6 70853734 70853798 -78663239 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1125 23 0 0 0 chr6 70855103 70855126 -78661911 + AT_rich Low_complexity Low_complexity 1 23 0 6 1125 26 0 0 0 chr6 70855208 70855234 -78661803 + AT_rich Low_complexity Low_complexity 1 26 0 6 1125 553 267 7 14 chr6 70855318 70855466 -78661571 - B1_Mus1 SINE Alu -1 147 1 6 1125 777 241 99 26 chr6 70855574 70855766 -78661271 - B3 SINE B2 -4 212 7 6 1125 1730 161 41 24 chr6 70855817 70856186 -78660851 - RLTR20A2 LTR ERVK -194 384 13 6 1125 695 245 26 84 chr6 70856422 70856649 -78660388 - MTE2b LTR MaLR -3 376 163 6 1125 314 332 63 0 chr6 70857032 70857202 -78659835 - MIRm SINE MIR -71 197 17 6 1125 194 57 57 0 chr6 70857466 70857501 -78659536 + (CAGAGA)n Simple_repeat Simple_repeat 6 42 0 6 1125 850 149 43 55 chr6 70857682 70857845 -78659192 - RLTR20A2 LTR ERVK 0 578 418 6 1125 556 216 0 30 chr6 70858269 70858369 -78658668 - RSINE1 SINE B4 -60 105 9 6 1125 324 341 44 0 chr6 70858488 70858579 -78658458 - PB1D10 SINE Alu -20 97 3 6 1125 1139 45 0 0 chr6 70858757 70858891 -78658146 + B1_Mm SINE Alu 1 134 -13 6 1125 281 26 26 0 chr6 70859187 70859225 -78657812 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 1125 490 268 86 14 chr6 70859234 70859374 -78657663 + RSINE1 SINE B4 3 152 -13 6 1125 423 176 304 0 chr6 70859422 70859524 -78657513 - B1_Mus1 SINE Alu -14 134 2 6 1125 22 35 0 0 chr6 70859524 70859553 -78657484 + AT_rich Low_complexity Low_complexity 1 29 0 6 1125 268 206 79 0 chr6 70860250 70860313 -78656724 + ID_B1 SINE B4 79 146 -78 6 1125 183 80 0 0 chr6 70860318 70860343 -78656694 + (CTTA)n Simple_repeat Simple_repeat 3 27 0 6 1125 380 146 115 58 chr6 70860346 70860433 -78656604 - B1_Mur1 SINE Alu -13 136 45 6 1125 260 265 81 35 chr6 70860459 70860537 -78656500 + ID_B1 SINE B4 134 217 -7 6 1125 428 0 0 19 chr6 70860537 70860590 -78656447 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1125 315 113 0 0 chr6 70860858 70860911 -78656126 + (TCCCG)n Simple_repeat Simple_repeat 2 54 0 6 1125 609 275 7 7 chr6 70861373 70861512 -78655525 + B1_Mur1 SINE Alu 5 143 -6 6 1125 695 168 35 91 chr6 70862608 70862805 -78654232 + B2_Mm2 SINE B2 4 189 -6 6 1125 980 31 139 0 chr6 70862812 70862941 -78654096 + B1_Mm SINE Alu 1 147 0 6 1125 274 221 130 14 chr6 70862954 70863023 -78654014 + RSINE1 SINE B4 87 163 -2 6 1125 306 211 0 0 chr6 70863777 70863834 -78653203 + B3 SINE B2 2 58 -158 6 1125 816 278 108 8 chr6 70863896 70864146 -78652891 - B4 SINE B4 -13 279 5 6 1125 188 88 0 56 chr6 70864180 70864216 -78652821 + (GGA)n Simple_repeat Simple_repeat 2 35 0 6 1125 800 248 93 29 chr6 70864224 70864428 -78652609 + ID_B1 SINE B4 6 222 -2 6 1125 336 266 294 0 chr6 70864644 70864753 -78652284 - RSINE1 SINE B4 -22 143 3 6 1125 237 338 0 0 chr6 70864823 70864891 -78652146 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1125 813 193 189 22 chr6 70864933 70865118 -78651919 + B3 SINE B2 1 216 0 6 1125 369 0 0 0 chr6 70865317 70865358 -78651679 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1125 233 289 179 45 chr6 70865371 70865639 -78651398 + RMER17C LTR ERVK 78 381 -29 6 1125 320 284 90 49 chr6 70866066 70866188 -78650849 + B3A SINE B2 14 140 -58 6 1125 333 0 0 0 chr6 70866196 70866233 -78650804 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1125 488 236 158 0 chr6 70866312 70866439 -78650598 + B1_Mm SINE Alu 1 147 0 6 1125 220 65 65 0 chr6 70866439 70866485 -78650552 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1125 879 226 54 0 chr6 70866551 70866719 -78650318 + B3 SINE B2 12 188 -28 6 1125 237 33 0 0 chr6 70866719 70866749 -78650288 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1125 555 236 30 121 chr6 70866749 70866778 -78650259 + B2_Mm2 SINE B2 163 191 -4 6 1125 444 242 77 0 chr6 70866796 70866887 -78650150 + B1F2 SINE Alu 1 98 -51 6 1125 1038 194 71 73 chr6 70866891 70867363 -78649674 + RLTR20C LTR ERVK 1 551 0 6 1125 425 115 0 0 chr6 70867365 70867426 -78649611 + B1_Mur1 SINE Alu 89 149 0 6 1125 308 216 195 18 chr6 70867963 70868076 -78648961 - MER63B DNA AcHobo -19 417 285 6 1125 225 65 0 0 chr6 70868280 70868311 -78648726 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 1125 656 246 0 0 chr6 70868333 70868451 -78648586 - ID_B1 SINE B4 -14 210 93 6 1125 811 179 7 28 chr6 70868441 70868585 -78648452 + B1_Mur1 SINE Alu 8 148 -1 6 1125 504 255 29 0 chr6 70868596 70868698 -78648339 - ID_B1 SINE B4 -116 108 4 6 1125 207 0 0 0 chr6 70869300 70869323 -78647714 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1125 430 277 20 0 chr6 70869410 70869511 -78647526 + RSINE1 SINE B4 29 131 -34 6 1125 422 300 101 30 chr6 70869558 70869826 -78647211 + L1MB4 LINE L1 5616 5902 -278 6 1125 671 259 197 17 chr6 70870102 70870341 -78646696 - B4A SINE B4 -10 282 1 7 1125 923 143 7 0 chr6 70870361 70870501 -78646536 - B1_Mur4 SINE Alu -7 143 3 7 1125 317 307 77 18 chr6 70872176 70872345 -78644692 - Tigger7 DNA MER2_type -41 2450 2272 7 1125 457 198 172 49 chr6 70872358 70872480 -78644557 + B1_Mur2 SINE Alu 1 137 -12 7 1125 825 71 0 0 chr6 70872480 70872593 -78644444 + (TAGA)n Simple_repeat Simple_repeat 3 115 0 7 1125 464 276 51 29 chr6 70872671 70872809 -78644228 + ID_B1 SINE B4 84 224 0 7 1125 521 262 73 34 chr6 70872834 70873012 -78644025 - MLT2B2 LTR ERVL -306 209 25 7 1125 336 230 0 51 chr6 70873139 70873217 -78643820 + PB1D10 SINE Alu 42 115 -2 7 1125 266 254 95 0 chr6 70873239 70873302 -78643735 + ID4_ SINE ID 4 72 -11 7 1125 921 109 72 0 chr6 70873373 70873511 -78643526 - B1_Mus1 SINE Alu 0 148 1 7 1125 1073 151 119 10 chr6 70873537 70873731 -78643306 - B3 SINE B2 0 216 2 7 1125 1002 211 9 14 chr6 70873759 70873975 -78643062 - B3 SINE B2 0 216 2 7 1125 228 267 50 62 chr6 70873975 70874055 -78642982 + MER90a LTR ERV1 227 305 -309 7 1125 498 233 125 0 chr6 70874107 70874227 -78642810 + RSINE1 SINE B4 1 135 -30 7 1125 420 20 0 0 chr6 70874242 70874291 -78642746 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1125 22 0 0 0 chr6 70874315 70874337 -78642700 + AT_rich Low_complexity Low_complexity 1 22 0 7 1125 692 228 0 8 chr6 70874347 70874475 -78642562 + ID_B1 SINE B4 77 203 -21 7 1125 710 133 9 0 chr6 70875004 70875109 -78641928 + B2_Mm2 SINE B2 2 107 -88 7 1125 657 207 36 29 chr6 70875840 70875979 -78641058 - B1_Mur3 SINE Alu -5 144 5 7 1125 530 296 35 0 chr6 70876188 70876330 -78640707 + B1F SINE Alu 3 149 0 7 1125 239 113 0 19 chr6 70876330 70876384 -78640653 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 7 1125 722 156 54 41 chr6 70876519 70876666 -78640371 + B1_Mur3 SINE Alu 1 149 0 7 1125 779 206 6 0 chr6 70876687 70876862 -78640175 + GA-rich Low_complexity Low_complexity 2 177 0 7 1125 239 226 19 0 chr6 70877121 70877174 -78639863 + CT-rich Low_complexity Low_complexity 2 55 0 7 1125 187 228 11 11 chr6 70877277 70877370 -78639667 + (TA)n Simple_repeat Simple_repeat 1 93 0 7 1125 412 214 282 0 chr6 70877537 70877640 -78639397 + B1_Mus1 SINE Alu 10 141 -7 7 1125 415 280 159 0 chr6 70877653 70877785 -78639252 + RSINE1 SINE B4 8 160 -5 7 1125 22 0 0 0 chr6 70877785 70877807 -78639230 + AT_rich Low_complexity Low_complexity 1 22 0 7 1125 492 62 0 0 chr6 70878204 70878268 -78638769 + (ATTG)n Simple_repeat Simple_repeat 2 65 0 7 1125 719 306 24 0 chr6 70878268 70878477 -78638560 - ID_B1 SINE B4 -10 214 1 7 1125 532 248 113 91 chr6 70878501 70878732 -78638305 - Lx8 LINE L1 -7 7466 7231 7 1125 758 195 0 39 chr6 70878953 70879108 -78637929 + B1_Mur4 SINE Alu 1 149 -1 7 1125 773 182 227 0 chr6 70879152 70879328 -78637709 + B3 SINE B2 1 216 0 7 1125 1437 80 16 0 chr6 70879335 70879523 -78637514 + B2_Mm2 SINE B2 2 192 -3 7 1125 342 0 0 0 chr6 70879722 70879760 -78637277 + (TGG)n Simple_repeat Simple_repeat 1 38 0 7 1125 344 237 159 115 chr6 70879760 70879780 -78637257 - RSINE1 SINE B4 0 165 147 7 1125 186 43 0 0 chr6 70879780 70879803 -78637234 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 1125 344 237 159 115 chr6 70879803 70879939 -78637098 - RSINE1 SINE B4 -19 146 2 7 1125 315 181 0 0 chr6 70880161 70880233 -78636804 + GA-rich Low_complexity Low_complexity 2 73 0 7 1125 752 286 17 6 chr6 70880251 70880430 -78636607 + B3A SINE B2 18 198 0 7 1125 445 255 59 0 chr6 70880438 70880540 -78636497 - PB1D9 SINE Alu -9 111 4 7 1125 258 286 107 48 chr6 70880451 70880554 -78636483 - B4 SINE B4 -105 187 79 7 1125 499 182 234 137 chr6 70880658 70880843 -78636194 - B3 SINE B2 0 216 17 7 1125 189 0 0 0 chr6 70880843 70880864 -78636173 + (TCCA)n Simple_repeat Simple_repeat 3 23 0 7 1125 499 182 234 137 chr6 70880864 70880875 -78636162 - B3 SINE B2 -200 16 3 7 1125 201 74 0 0 chr6 70880955 70880982 -78636055 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1125 1238 54 0 0 chr6 70880982 70881129 -78635908 - B1_Mus2 SINE Alu 0 147 1 7 1125 302 248 71 79 chr6 70881593 70881720 -78635317 + MLT1K LTR MaLR 462 587 -8 7 1125 662 253 10 63 chr6 70881890 70882097 -78634940 - B3A SINE B2 0 198 3 7 1125 843 143 38 0 chr6 70882128 70882261 -78634776 - B1_Mus1 SINE Alu 0 148 11 7 1125 318 241 35 24 chr6 70882185 70882270 -78634767 - 4.5SRNA scRNA scRNA -8 86 1 7 1125 411 38 0 0 chr6 70882276 70882329 -78634708 + (T)n Simple_repeat Simple_repeat 1 53 0 7 1125 484 252 63 24 chr6 70882330 70882456 -78634581 - B1F2 SINE Alu -1 148 18 7 1125 368 280 17 32 chr6 70882634 70882739 -78634298 - B1F SINE Alu -9 111 3 7 1125 1165 56 14 0 chr6 70883038 70883182 -78633855 + B1_Mus2 SINE Alu 2 147 0 7 1125 205 77 77 0 chr6 70883183 70883222 -78633815 + A-rich Low_complexity Low_complexity 3 44 0 7 1125 234 383 7 47 chr6 70883222 70883244 -78633793 + ID_B1 SINE B4 80 221 -3 7 1125 318 269 0 143 chr6 70883244 70883370 -78633667 + PB1 SINE Alu 18 125 -2 7 1125 519 211 29 0 chr6 70883382 70883486 -78633551 + PB1D9 SINE Alu 2 108 -12 7 1125 314 246 14 14 chr6 70883506 70883576 -78633461 + ID SINE ID 4 73 -151 7 1125 189 0 0 0 chr6 70883576 70883597 -78633440 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1125 652 292 28 125 chr6 70883665 70884025 -78633012 - MLT1B LTR MaLR -12 378 54 7 1125 392 258 40 20 chr6 70884226 70884325 -78632712 + ID_B1 SINE B4 88 188 -36 7 1125 471 48 0 0 chr6 70885173 70885235 -78631802 + (TC)n Simple_repeat Simple_repeat 2 63 0 7 1125 477 315 62 0 chr6 70885333 70885479 -78631558 + RSINE1 SINE B4 3 157 -8 7 1125 363 78 0 0 chr6 70885485 70885536 -78631501 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1125 272 250 0 48 chr6 70885543 70885690 -78631347 + ORR1B1-int LTR MaLR 615 754 -755 7 1125 716 160 17 0 chr6 70885588 70885707 -78631330 + B1_Mus1 SINE Alu 7 127 -21 7 1125 201 74 0 0 chr6 70885708 70885735 -78631302 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1125 216 0 0 0 chr6 70885977 70886001 -78631036 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1125 420 20 0 0 chr6 70886001 70886049 -78630988 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1125 238 180 16 16 chr6 70886451 70886513 -78630524 + CT-rich Low_complexity Low_complexity 2 63 0 7 1125 767 193 0 21 chr6 70886529 70886672 -78630365 - B1_Mur1 SINE Alu -9 140 1 7 1125 629 265 105 58 chr6 70886817 70886937 -78630100 - B4A SINE B4 -2 290 171 7 1125 432 0 0 0 chr6 70886937 70886985 -78630052 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 7 1125 629 265 105 58 chr6 70886985 70887140 -78629897 - B4A SINE B4 -122 170 2 7 1125 685 146 48 16 chr6 70887473 70887598 -78629439 + B1_Mus1 SINE Alu 20 148 0 7 1125 442 228 38 45 chr6 70888935 70889068 -78627969 - B1F SINE Alu 0 149 18 7 1125 40 37 0 0 chr6 70889083 70889137 -78627900 + AT_rich Low_complexity Low_complexity 1 54 0 7 1125 565 250 0 62 chr6 70889169 70889331 -78627706 - RSINE1 SINE B4 -11 154 3 7 1125 405 0 0 0 chr6 70889335 70889380 -78627657 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1125 414 79 143 0 chr6 70889468 70889531 -78627506 + B1_Mur4 SINE Alu 35 106 -44 7 1125 333 102 0 0 chr6 70889531 70889590 -78627447 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1125 383 180 105 63 chr6 70889590 70889621 -78627416 + B1_Mur2 SINE Alu 106 132 -17 7 1125 1678 134 84 0 chr6 70889717 70889978 -78627059 - MTC LTR MaLR -35 386 104 7 1125 1610 100 0 0 chr6 70889978 70890198 -78626839 - URR1A DNA MER1_type 0 226 7 7 1125 814 115 0 47 chr6 70890191 70890319 -78626718 - MTC LTR MaLR -299 122 1 7 1125 1379 138 4 34 chr6 70890927 70891160 -78625877 + URR1A DNA MER1_type 1 226 0 7 1125 523 295 79 37 chr6 70891347 70891537 -78625500 + B3A SINE B2 1 198 0 7 1125 974 228 48 0 chr6 70891545 70891751 -78625286 + B3 SINE B2 1 216 0 7 1125 23 0 0 0 chr6 70891751 70891774 -78625263 + AT_rich Low_complexity Low_complexity 1 23 0 7 1125 595 226 44 22 chr6 70891775 70891911 -78625126 + B1_Mur2 SINE Alu 1 139 -10 7 1125 306 0 0 0 chr6 70891911 70891945 -78625092 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1125 311 279 51 0 chr6 70891970 70892049 -78624988 + L1MC LINE L1 3805 3887 -2259 7 1125 555 136 9 18 chr6 70892049 70892161 -78624876 + GA-rich Low_complexity Low_complexity 2 112 0 7 1125 226 257 13 63 chr6 70892162 70892241 -78624796 - YREP_Mm Unknown Unknown -1482 330 256 7 1125 689 158 84 30 chr6 70892192 70892323 -78624714 + B1F2 SINE Alu 12 149 0 7 1125 228 163 47 0 chr6 70892338 70892381 -78624656 + L1MC LINE L1 3952 3996 -2150 7 1125 248 213 0 0 chr6 70892401 70892448 -78624589 - ID_B1 SINE B4 -3 221 175 7 1125 783 302 6 0 chr6 70893630 70893812 -78623225 - ID_B1 SINE B4 -41 183 1 7 1125 312 326 0 74 chr6 70893827 70893976 -78623061 + L1M4 LINE L1 4024 4161 -1985 7 1125 336 242 142 55 chr6 70893996 70894123 -78622914 + B1F SINE Alu 11 148 -1 7 1125 270 324 57 7 chr6 70894168 70894308 -78622729 + L1MD LINE L1 4159 4305 -1841 7 1125 460 316 17 0 chr6 70894363 70894480 -78622557 - ID_B1 SINE B4 -20 204 86 7 1125 768 167 7 36 chr6 70894689 70894826 -78622211 + B1_Mur2 SINE Alu 3 135 -14 7 1125 357 24 0 0 chr6 70894826 70894868 -78622169 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 7 1125 464 139 0 0 chr6 70894962 70895041 -78621996 + L1_Mus2 LINE L1 6477 6555 -11 7 1125 387 0 0 0 chr6 70895041 70895084 -78621953 + (TAA)n Simple_repeat Simple_repeat 3 45 0 8 1125 300 232 0 0 chr6 70895632 70895688 -78621349 - PB1D10 SINE Alu -47 70 15 8 1125 307 331 145 0 chr6 70895800 70895924 -78621113 - B1F SINE Alu -7 142 1 8 1125 499 255 10 8 chr6 70896007 70896130 -78620907 + B1F1 SINE Alu 1 120 -27 8 1125 216 0 0 0 chr6 70896191 70896215 -78620822 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1125 314 310 0 12 chr6 70897440 70897525 -78619512 + B4A SINE B4 2 85 -207 8 1125 282 281 43 33 chr6 70897558 70897650 -78619387 + RSINE1 SINE B4 38 130 -35 8 1125 854 127 0 0 chr6 70897794 70897920 -78619117 - B1_Mur4 SINE Alu -15 135 10 8 1125 22 0 0 0 chr6 70898409 70898431 -78618606 + AT_rich Low_complexity Low_complexity 1 22 0 8 1125 587 192 264 0 chr6 70898555 70898722 -78618315 - B3 SINE B2 -5 211 1 8 1125 445 280 24 28 chr6 70898722 70898935 -78618102 - B3 SINE B2 -1 215 4 8 1125 228 35 0 0 chr6 70899020 70899049 -78617988 + (GA)n Simple_repeat Simple_repeat 1 29 0 8 1125 219 36 0 0 chr6 70899260 70899288 -78617749 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1125 228 135 0 0 chr6 70899392 70899429 -78617608 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1125 973 226 19 19 chr6 70899562 70899778 -78617259 + B3 SINE B2 1 216 0 8 1125 603 284 28 0 chr6 70899882 70900058 -78616979 - B3A SINE B2 -17 181 1 8 1125 228 253 76 0 chr6 70900058 70900137 -78616900 - L1MCa LINE L1 -5461 1047 963 8 1125 641 225 72 0 chr6 70900288 70900426 -78616611 + B1_Mur2 SINE Alu 1 148 -1 8 1125 1358 77 5 27 chr6 70900438 70900626 -78616411 + B2_Mm1a SINE B2 2 185 -8 8 1125 255 272 0 52 chr6 70900647 70900744 -78616293 + CT-rich Low_complexity Low_complexity 3 94 0 8 1125 272 319 32 21 chr6 70901071 70901164 -78615873 + BC1_Mm scRNA scRNA 6 99 -53 8 1125 347 198 43 21 chr6 70901525 70901618 -78615419 + Lx7 LINE L1 7592 7686 -10 8 1125 291 104 0 0 chr6 70901623 70901671 -78615366 + (TCC)n Simple_repeat Simple_repeat 2 49 0 8 1125 705 189 0 45 chr6 70901673 70901806 -78615231 - B1_Mus1 SINE Alu -16 132 6 8 1125 25 51 0 0 chr6 70901813 70901852 -78615185 + AT_rich Low_complexity Low_complexity 1 39 0 8 1125 555 261 0 0 chr6 70901898 70902009 -78615028 + ID_B1 SINE B4 113 223 -1 8 1125 470 239 0 0 chr6 70902012 70902100 -78614937 + PB1D9 SINE Alu 30 117 -3 8 1125 320 261 81 44 chr6 70902142 70902278 -78614759 + L1MCa LINE L1 1825 1965 -4543 8 1125 331 230 18 0 chr6 70902730 70902843 -78614194 + CT-rich Low_complexity Low_complexity 2 116 0 8 1125 446 231 97 24 chr6 70903255 70903379 -78613658 - B1F1 SINE Alu -15 134 2 8 1125 335 263 10 40 chr6 70903541 70903640 -78613397 + PB1D7 SINE Alu 4 99 -21 8 1125 204 130 21 42 chr6 70903792 70903840 -78613197 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 8 1125 208 143 0 0 chr6 70903801 70903836 -78613201 + (TC)n Simple_repeat Simple_repeat 2 36 0 8 1125 547 228 10 0 chr6 70903844 70903945 -78613092 - RSINE1 SINE B4 -51 114 13 8 1125 226 122 182 39 chr6 70904106 70904183 -78612854 - B2_Mm1t SINE B2 -1 192 105 8 1125 681 47 0 0 chr6 70904594 70904679 -78612358 + (TG)n Simple_repeat Simple_repeat 1 85 0 8 1125 21 36 0 0 chr6 70905095 70905123 -78611914 + AT_rich Low_complexity Low_complexity 1 28 0 8 1125 245 210 125 31 chr6 70905194 70905258 -78611779 - RSINE1 SINE B4 -91 74 5 8 1125 223 250 103 0 chr6 70907794 70907862 -78609175 - ID SINE ID -138 86 12 8 1125 339 190 0 0 chr6 70907805 70907863 -78609174 - tRNA-Ala-GCA tRNA tRNA -13 62 5 8 1125 290 218 0 18 chr6 70907951 70908007 -78609030 + ID_B1 SINE B4 109 163 -61 8 1125 189 365 0 133 chr6 70908104 70908202 -78608835 - L4 LINE RTE -1067 962 878 8 1125 315 0 0 0 chr6 70908488 70908523 -78608514 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1125 280 197 81 40 chr6 70908523 70908597 -78608440 + MT2B LTR ERVL 181 257 -344 8 1125 545 146 12 0 chr6 70908535 70908617 -78608420 + B1_Mur2 SINE Alu 42 124 -25 8 1125 468 0 0 0 chr6 70908618 70908670 -78608367 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1125 210 288 146 36 chr6 70908721 70908858 -78608179 + MIRc SINE MIR 86 237 -31 8 1125 401 315 39 78 chr6 70909652 70909831 -78607206 + ID_B1 SINE B4 77 248 -44 8 1126 371 293 24 31 chr6 70910039 70910166 -78606871 + Tigger7 DNA MER2_type 2339 2464 -27 8 1126 680 202 46 8 chr6 70910217 70910347 -78606690 + B1_Mur3 SINE Alu 3 137 -12 8 1126 360 0 0 0 chr6 70910347 70910387 -78606650 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 8 1126 244 240 20 0 chr6 70911573 70911623 -78605414 - Tigger7 DNA MER2_type -31 2460 2410 8 1126 465 147 34 24 chr6 70911839 70911937 -78605100 - B1_Mur2 SINE Alu 0 149 52 8 1126 207 0 0 0 chr6 70912049 70912072 -78604965 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1126 329 186 138 11 chr6 70913837 70913924 -78603113 - ID_B1 SINE B4 -29 195 98 8 1126 1682 177 95 50 chr6 70914485 70914842 -78602195 + Lx5 LINE L1 6678 7050 0 8 1126 711 241 106 5 chr6 70915037 70915225 -78601812 + B3 SINE B2 2 208 -8 8 1126 1162 88 0 0 chr6 70915493 70915641 -78601396 - B1_Mus1 SINE Alu 0 148 1 8 1126 731 272 30 68 chr6 70915832 70916244 -78600793 + RMER17C LTR ERVK 2 378 -32 8 1126 727 191 7 7 chr6 70916329 70916471 -78600566 + B1_Mm SINE Alu 1 142 -5 8 1126 815 196 0 7 chr6 70916621 70916770 -78600267 - B1_Mur3 SINE Alu -1 148 1 8 1126 341 150 0 48 chr6 70916790 70916853 -78600184 - PB1D9 SINE Alu 0 149 68 8 1126 498 301 15 0 chr6 70916984 70917117 -78599920 - RSINE1 SINE B4 -29 136 2 8 1126 236 59 38 38 chr6 70917823 70917876 -78599161 + (CGGGGG)n Simple_repeat Simple_repeat 3 55 0 8 1126 487 256 39 0 chr6 70917971 70918100 -78598937 + B1F1 SINE Alu 8 141 -8 8 1126 399 290 26 46 chr6 70918156 70918308 -78598729 + B1F1 SINE Alu 1 149 0 8 1126 268 232 56 83 chr6 70918735 70918843 -78598194 - B1F1 SINE Alu -16 133 29 8 1126 324 221 103 0 chr6 70919029 70919097 -78597940 - B1F SINE Alu -56 93 19 8 1126 297 250 55 14 chr6 70919234 70919307 -78597730 + ID4_ SINE ID 7 82 -1 8 1126 709 299 20 0 chr6 70919379 70919583 -78597454 + ID_B1 SINE B4 2 209 -15 8 1126 518 212 28 6 chr6 70919666 70919820 -78597217 + B1F SINE Alu 1 149 0 8 1126 187 310 212 12 chr6 70919886 70920056 -78596981 - L2 LINE L2 -632 2787 2584 8 1126 1374 138 106 91 chr6 70920345 70920461 -78596576 + RMER17C LTR ERVK 1 109 -301 8 1126 1237 35 7 0 chr6 70920461 70920606 -78596431 - B1_Mm SINE Alu 0 147 2 8 1126 1374 138 106 91 chr6 70920606 70920797 -78596240 + RMER17C LTR ERVK 110 284 -126 8 1126 192 40 0 0 chr6 70920797 70920822 -78596215 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 8 1126 1374 138 106 91 chr6 70920822 70920911 -78596126 + RMER17C LTR ERVK 285 403 -7 8 1126 205 312 0 0 chr6 70921076 70921124 -78595913 + polypyrimidine Low_complexity Low_complexity 2 49 0 8 1126 664 203 0 45 chr6 70921124 70921258 -78595779 - B1_Mur4 SINE Alu -22 128 1 8 1126 485 161 0 36 chr6 70921258 70921412 -78595625 - B1_Mur3 SINE Alu -29 120 2 8 1126 225 86 29 0 chr6 70921383 70921418 -78595619 - MT2B LTR ERVL -314 287 252 8 1126 243 250 0 0 chr6 70921881 70921925 -78595112 - ID4_ SINE ID -39 44 1 8 1126 222 204 0 0 chr6 70921936 70921980 -78595057 + (CATG)n Simple_repeat Simple_repeat 1 44 0 8 1126 337 298 144 32 chr6 70921981 70922168 -78594869 - ID_B1 SINE B4 -13 211 4 8 1126 240 64 42 21 chr6 70922172 70922220 -78594817 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 8 1126 462 325 43 0 chr6 70922276 70922393 -78594644 - B1F SINE Alu -27 122 1 8 1126 840 128 49 21 chr6 70922407 70922420 -78594617 - B1_Mus1 SINE Alu 0 148 137 8 1126 228 35 0 0 chr6 70922420 70922449 -78594588 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1126 840 128 49 21 chr6 70922449 70922579 -78594458 - B1_Mus1 SINE Alu -12 136 1 8 1126 336 278 113 0 chr6 70922588 70922685 -78594352 - PB1 SINE Alu -2 125 18 8 1126 294 288 30 0 chr6 70922694 70922760 -78594277 - ID SINE ID -155 69 2 8 1126 832 296 24 19 chr6 70923099 70923309 -78593728 - ID_B1 SINE B4 -8 216 6 8 1126 504 0 0 0 chr6 70923712 70923768 -78593269 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1126 306 246 0 0 chr6 70923785 70923842 -78593195 - RSINE1 SINE B4 -78 87 31 8 1126 254 298 139 64 chr6 70924215 70924387 -78592650 + Cheshire DNA MER1_type 3 187 -2233 8 1126 755 222 91 5 chr6 70925734 70925933 -78591104 - B3 SINE B2 0 216 1 8 1126 878 159 7 0 chr6 70926322 70926460 -78590577 + B1_Mus2 SINE Alu 2 140 -7 8 1126 324 258 0 0 chr6 70926498 70926560 -78590477 - B1F SINE Alu -86 63 2 8 1126 250 314 71 0 chr6 70926640 70926710 -78590327 - ID SINE ID -143 81 7 8 1126 341 270 179 20 chr6 70926807 70926958 -78590079 + B4A SINE B4 109 283 -9 8 1126 186 43 0 0 chr6 70927220 70927243 -78589794 + (TTA)n Simple_repeat Simple_repeat 3 25 0 8 1126 187 233 139 0 chr6 70927308 70927351 -78589686 + MIR SINE MIR 93 141 -67 8 1126 514 244 106 49 chr6 70927372 70927514 -78589523 + RSINE1 SINE B4 2 151 -14 8 1126 437 261 27 40 chr6 70927649 70927797 -78589240 - B1_Mur1 SINE Alu -1 148 3 8 1126 341 167 323 161 chr6 70927851 70927932 -78589105 + B3 SINE B2 1 78 -138 9 1126 180 0 0 0 chr6 70927932 70927952 -78589085 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 1126 341 167 323 161 chr6 70927952 70928056 -78588981 + B3 SINE B2 79 216 0 9 1126 802 249 13 52 chr6 70928084 70928313 -78588724 + ID_B1 SINE B4 5 224 0 9 1126 396 138 0 0 chr6 70928844 70928909 -78588128 + (GGA)n Simple_repeat Simple_repeat 3 67 0 9 1126 495 241 71 54 chr6 70928909 70929066 -78587971 + B2_Mm2 SINE B2 1 163 -32 9 1126 243 0 0 0 chr6 70929066 70929093 -78587944 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1126 474 18 0 0 chr6 70929093 70929147 -78587890 + (TA)n Simple_repeat Simple_repeat 1 55 0 9 1126 495 241 71 54 chr6 70929147 70929172 -78587865 + B2_Mm2 SINE B2 164 186 -9 9 1126 899 161 14 7 chr6 70929310 70929454 -78587583 + B1_Mus1 SINE Alu 4 148 0 9 1126 721 304 22 0 chr6 70929478 70929659 -78587378 - B3 SINE B2 -30 186 2 9 1126 237 338 0 0 chr6 70929930 70930001 -78587036 + CT-rich Low_complexity Low_complexity 4 74 0 9 1126 1216 34 0 46 chr6 70930065 70930218 -78586819 + B1_Mus2 SINE Alu 1 146 -1 9 1126 676 304 5 66 chr6 70930268 70930465 -78586572 - B3A SINE B2 0 198 14 9 1126 558 219 0 58 chr6 70930527 70930648 -78586389 - PB1D9 SINE Alu -5 115 2 9 1126 1287 108 16 5 chr6 70931521 70931707 -78585330 - B2_Mm2 SINE B2 -7 188 1 9 1126 1020 131 91 6 chr6 70931711 70931730 -78585307 - B2_Mm1t SINE B2 -2 191 167 9 1126 608 209 27 0 chr6 70931730 70931840 -78585197 - PB1D9 SINE Alu -6 114 2 9 1126 425 34 17 0 chr6 70931845 70931904 -78585133 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 9 1126 1058 101 61 0 chr6 70931904 70932054 -78584983 - B2_Mm2 SINE B2 -32 161 1 9 1126 297 0 0 0 chr6 70932204 70932237 -78584800 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 9 1126 474 18 0 0 chr6 70932281 70932336 -78584701 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1126 671 172 60 8 chr6 70932481 70932598 -78584439 - B1_Mur2 SINE Alu -14 135 13 9 1126 277 235 88 125 chr6 70932513 70932649 -78584388 - MT2B LTR ERVL -344 257 127 9 1126 292 356 45 11 chr6 70932786 70932874 -78584163 - RSINE1 SINE B4 -1 164 74 9 1126 876 89 0 0 chr6 70932948 70933071 -78583966 + (TTCC)n Simple_repeat Simple_repeat 1 123 0 9 1126 227 327 0 0 chr6 70933084 70933136 -78583901 - ID4_ SINE ID -20 63 12 9 1126 222 278 185 22 chr6 70933175 70933267 -78583770 - PB1 SINE Alu -9 118 12 9 1126 205 140 23 23 chr6 70933277 70933321 -78583716 + T-rich Low_complexity Low_complexity 5 48 0 9 1126 458 221 43 122 chr6 70933343 70933482 -78583555 - B1F2 SINE Alu -21 128 1 9 1126 252 278 0 53 chr6 70933416 70933492 -78583545 - B4A SINE B4 -143 149 78 9 1126 398 268 10 10 chr6 70933555 70933653 -78583384 + B3A SINE B2 1 98 -100 9 1126 242 259 0 45 chr6 70933778 70933813 -78583224 + polypyrimidine Low_complexity Low_complexity 52 86 0 9 1126 429 66 0 0 chr6 70933813 70933874 -78583163 + (TCCA)n Simple_repeat Simple_repeat 4 64 0 9 1126 242 259 0 45 chr6 70933874 70933927 -78583110 + polypyrimidine Low_complexity Low_complexity 2 51 0 9 1126 323 257 69 10 chr6 70933927 70934029 -78583008 - PB1D10 SINE Alu -1 116 9 9 1126 225 312 0 0 chr6 70933977 70934041 -78582996 - B4A SINE B4 -147 145 82 9 1126 449 202 0 0 chr6 70934050 70934129 -78582908 - B1_Mur1 SINE Alu 0 149 71 9 1126 252 242 137 0 chr6 70934138 70934233 -78582804 - L1MB8 LINE L1 -53 6131 6024 9 1126 1308 59 64 6 chr6 70934265 70934436 -78582601 - B2_Mm2 SINE B2 -14 181 1 9 1126 487 195 254 0 chr6 70934446 70934615 -78582422 - B3 SINE B2 -3 213 2 9 1126 197 33 0 32 chr6 70934622 70934653 -78582384 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 9 1126 1126 81 0 20 chr6 70934653 70934804 -78582233 - B1_Mus1 SINE Alu 0 148 1 9 1126 1333 77 44 0 chr6 70934814 70934996 -78582041 - B2_Mm1a SINE B2 -1 192 3 9 1126 356 264 117 19 chr6 70935052 70935214 -78581823 - L1MB8 LINE L1 -175 6003 5826 9 1126 315 0 0 0 chr6 70935233 70935268 -78581769 + (TATG)n Simple_repeat Simple_repeat 2 36 0 9 1126 228 182 121 0 chr6 70935268 70935334 -78581703 - Lx5 LINE L1 -13 7037 6964 9 1126 35 0 0 0 chr6 70935419 70935454 -78581583 + AT_rich Low_complexity Low_complexity 1 35 0 9 1126 707 147 16 0 chr6 70935532 70935661 -78581376 + CT-rich Low_complexity Low_complexity 1 131 0 9 1126 361 218 92 0 chr6 70935661 70935748 -78581289 - B1F1 SINE Alu -1 148 54 9 1126 371 263 39 29 chr6 70935763 70935865 -78581172 - RSINE1 SINE B4 -60 105 3 9 1126 215 106 0 41 chr6 70936009 70936058 -78580979 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 9 1126 280 273 49 29 chr6 70936081 70936183 -78580854 - L1MB8 LINE L1 -530 5654 5551 9 1126 535 202 76 15 chr6 70936234 70936365 -78580672 + B1_Mur1 SINE Alu 2 140 -9 9 1126 228 217 143 14 chr6 70936371 70936441 -78580596 + B4A SINE B4 2 80 -212 9 1126 712 267 34 34 chr6 70937209 70937241 -78579796 - B3 SINE B2 -6 210 178 9 1126 231 114 0 0 chr6 70937241 70937276 -78579761 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1126 823 248 7 7 chr6 70937276 70937452 -78579585 - B3A SINE B2 -39 177 2 9 1126 253 232 174 0 chr6 70937467 70937536 -78579501 - B3A SINE B2 -117 81 1 9 1126 325 296 29 39 chr6 70937548 70937650 -78579387 - B1F1 SINE Alu -48 101 1 9 1126 450 292 0 0 chr6 70937677 70937773 -78579264 + RSINE1 SINE B4 46 141 -24 9 1126 351 0 0 0 chr6 70937777 70937816 -78579221 + (TC)n Simple_repeat Simple_repeat 1 39 0 9 1126 180 0 0 0 chr6 70937816 70937835 -78579202 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 1126 270 0 0 0 chr6 70937835 70937865 -78579172 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1126 357 325 74 45 chr6 70938112 70938354 -78578683 - B4 SINE B4 -6 286 38 9 1126 283 256 43 43 chr6 70938355 70938449 -78578588 + PB1D9 SINE Alu 27 120 0 9 1126 674 209 36 11 chr6 70938446 70938602 -78578435 + ID_B1 SINE B4 82 246 -46 9 1126 339 265 15 0 chr6 70938608 70938676 -78578361 + ID4_ SINE ID 9 77 -6 9 1126 189 0 0 0 chr6 70938686 70938707 -78578330 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 1126 298 253 33 78 chr6 70938707 70938718 -78578319 + ID_B1 SINE B4 83 94 -130 9 1126 1393 237 52 62 chr6 70939217 70939317 -78577720 + MTD LTR MaLR 5 99 -320 9 1126 2112 194 27 17 chr6 70939317 70939731 -78577306 + MTD LTR MaLR 2 419 0 9 1126 1393 237 52 62 chr6 70939731 70940017 -78577020 + MTD LTR MaLR 100 387 -32 9 1126 401 66 16 0 chr6 70940023 70940084 -78576953 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1126 620 265 48 0 chr6 70940086 70940233 -78576804 - B3A SINE B2 -42 156 3 9 1126 235 67 0 0 chr6 70940233 70940263 -78576774 + ORR1D2 LTR MaLR 327 356 -14 9 1126 475 299 111 29 chr6 70940505 70940712 -78576325 + ID_B1 SINE B4 1 224 0 9 1126 1483 82 0 5 chr6 70940798 70940994 -78576043 + B2_Mm2 SINE B2 1 195 0 9 1126 405 0 0 0 chr6 70941027 70941072 -78575965 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 9 1126 355 269 97 0 chr6 70941076 70941096 -78575941 + B1F SINE Alu 1 147 -2 9 1126 478 219 53 0 chr6 70941096 70941210 -78575827 + ID_B1 SINE B4 103 222 -2 9 1126 281 248 157 10 chr6 70941296 70941398 -78575639 - L1M4 LINE L1 -1000 5146 5030 9 1126 309 26 0 0 chr6 70941413 70941451 -78575586 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1126 26 50 0 0 chr6 70941451 70941491 -78575546 + AT_rich Low_complexity Low_complexity 1 40 0 9 1126 477 329 35 7 chr6 70941497 70941641 -78575396 - RSINE1 SINE B4 -11 154 7 9 1126 350 269 85 11 chr6 70941681 70941775 -78575262 + B1F SINE Alu 48 148 -1 9 1126 239 133 0 22 chr6 70942552 70942598 -78574439 + GA-rich Low_complexity Low_complexity 1 45 0 9 1126 1053 197 24 19 chr6 70943013 70943220 -78573817 - B3 SINE B2 -1 215 8 9 1126 452 259 150 7 chr6 70943394 70943534 -78573503 - RSINE1 SINE B4 -4 161 2 9 1126 360 289 44 0 chr6 70943566 70943656 -78573381 - B1F1 SINE Alu -51 98 5 9 1126 217 375 0 0 chr6 70943599 70943663 -78573374 - B4A SINE B4 -146 146 83 9 1126 761 171 76 0 chr6 70943811 70943969 -78573068 - L1MA9 LINE L1 0 6312 6143 9 1126 762 220 0 0 chr6 70944021 70944198 -78572839 + CT-rich Low_complexity Low_complexity 2 178 0 9 1126 506 266 73 0 chr6 70944222 70944331 -78572706 - ID_B1 SINE B4 -107 117 1 9 1126 268 232 109 100 chr6 70944466 70944576 -78572461 + MT2B LTR ERVL 147 257 -344 9 1126 770 207 29 0 chr6 70944479 70944619 -78572418 + B1_Mur2 SINE Alu 6 149 0 9 1126 318 80 0 0 chr6 70944621 70944671 -78572366 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 9 1126 466 43 0 28 chr6 70944682 70944753 -78572284 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 9 1126 1080 201 24 14 chr6 70944753 70944965 -78572072 + B3 SINE B2 3 216 0 9 1126 332 268 0 111 chr6 70945001 70945127 -78571910 + PB1D10 SINE Alu 1 112 -5 9 1126 636 290 43 0 chr6 70945247 70945433 -78571604 + B3A SINE B2 3 196 -2 9 1126 314 230 80 11 chr6 70945453 70945541 -78571496 - L1M5 LINE L1 -1243 4903 4810 9 1126 704 43 11 0 chr6 70945590 70945682 -78571355 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 9 1126 28 61 0 0 chr6 70945692 70945741 -78571296 + AT_rich Low_complexity Low_complexity 1 49 0 9 1126 923 242 9 19 chr6 70945750 70945965 -78571072 + B3 SINE B2 1 213 -3 9 1126 810 164 7 14 chr6 70945974 70946122 -78570915 + B1_Mus1 SINE Alu 2 148 0 9 1126 21 0 0 0 chr6 70946123 70946144 -78570893 + AT_rich Low_complexity Low_complexity 1 21 0 9 1126 586 182 29 42 chr6 70946831 70946973 -78570064 - PB1D10 SINE Alu -23 288 15 9 1126 323 269 75 19 chr6 70946885 70946991 -78570046 - B4A SINE B4 -102 190 79 9 1126 313 250 96 103 chr6 70946901 70947057 -78569980 - MT2B2 LTR ERVL -343 241 87 1 1126 694 255 78 5 chr6 70947166 70947359 -78569678 + B3 SINE B2 4 210 -6 1 1126 550 267 52 57 chr6 70947372 70947602 -78569435 + B4A SINE B4 2 230 -62 1 1126 593 156 102 3 chr6 70947652 70947673 -78569364 + B1_Mur2 SINE Alu 1 104 -45 1 1126 241 331 46 46 chr6 70947673 70947751 -78569286 + B4A SINE B4 112 193 -99 1 1126 189 0 0 0 chr6 70947751 70947772 -78569265 + (CAGC)n Simple_repeat Simple_repeat 3 23 0 1 1126 593 144 96 0 chr6 70947772 70947793 -78569244 + B1_Mur2 SINE Alu 105 135 -14 1 1126 241 331 46 46 chr6 70947793 70947823 -78569214 + B4A SINE B4 194 241 -51 1 1126 225 257 37 86 chr6 70947803 70947884 -78569153 + MT2B2 LTR ERVL 207 283 -301 1 1126 213 314 0 0 chr6 70948061 70948112 -78568925 - B4A SINE B4 -156 136 86 1 1126 2140 141 43 48 chr6 70948283 70948655 -78568382 - ORR1C1 LTR MaLR -8 370 1 1 1126 459 205 11 43 chr6 70948743 70948835 -78568202 - RSINE1 SINE B4 -22 143 55 1 1126 518 243 27 27 chr6 70948845 70948955 -78568082 - ID_B1 SINE B4 -29 195 86 1 1126 1822 150 132 27 chr6 70949019 70949390 -78567647 + MTC LTR MaLR 4 413 -8 1 1126 789 294 196 10 chr6 70949396 70949773 -78567264 + MLT1F LTR MaLR 93 539 -9 1 1126 1723 250 69 9 chr6 70949984 70950436 -78566601 + Lx8 LINE L1 6826 7304 -169 1 1126 1190 261 81 29 chr6 70950456 70950803 -78566234 - ORR1D1 LTR MaLR -8 366 2 1 1126 24 32 0 0 chr6 70950809 70950840 -78566197 + AT_rich Low_complexity Low_complexity 1 31 0 1 1126 1005 189 36 10 chr6 70950840 70951033 -78566004 + B3 SINE B2 2 199 -17 1 1126 25 31 0 0 chr6 70951132 70951164 -78565873 + AT_rich Low_complexity Low_complexity 1 32 0 1 1126 2809 227 58 110 chr6 70951622 70952823 -78564214 - RMER1A Other Other -178 852 29 1 1126 790 196 0 40 chr6 70953269 70953418 -78563619 - B1_Mur1 SINE Alu 0 149 7 1 1126 526 261 14 42 chr6 70953562 70953706 -78563331 - RSINE1 SINE B4 0 165 26 1 1126 279 210 30 0 chr6 70953918 70954018 -78563019 + (TA)n Simple_repeat Simple_repeat 2 104 0 1 1126 661 269 107 0 chr6 70954525 70954722 -78562315 + ID_B1 SINE B4 3 220 -4 1 1126 328 349 19 9 chr6 70955025 70955132 -78561905 + PB1D7 SINE Alu 7 114 -6 1 1126 411 248 17 34 chr6 70955182 70955299 -78561738 - B1F2 SINE Alu -1 148 34 1 1126 935 124 0 0 chr6 70955331 70955468 -78561569 - B2_Mm2 SINE B2 -23 172 36 1 1126 251 288 47 23 chr6 70955492 70955620 -78561417 + L1MC5 LINE L1 7724 7854 -107 1 1126 1463 38 48 21 chr6 70955641 70955829 -78561208 - B2_Mm1a SINE B2 0 193 1 1 1126 576 153 14 7 chr6 70955852 70955990 -78561047 + (TCTA)n Simple_repeat Simple_repeat 2 140 0 1 1126 423 257 106 0 chr6 70956012 70956125 -78560912 - RSINE1 SINE B4 -38 127 3 1 1126 579 29 0 0 chr6 70956238 70956307 -78560730 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1126 389 200 0 34 chr6 70956317 70956405 -78560632 - MLT1A LTR MaLR -227 147 63 1 1126 368 253 33 89 chr6 70956493 70956634 -78560403 + PB1 SINE Alu 1 141 -8 1 1126 227 238 0 0 chr6 70956635 70956677 -78560360 + G-rich Low_complexity Low_complexity 5 46 0 1 1126 302 224 111 93 chr6 70956766 70956874 -78560163 + RSINE1 SINE B4 55 164 -1 1 1126 286 80 40 0 chr6 70956888 70956938 -78560099 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1126 446 238 39 16 chr6 70957728 70957856 -78559181 - ID_B1 SINE B4 -13 211 81 1 1126 608 258 8 0 chr6 70957893 70958017 -78559020 + RSINE1 SINE B4 2 126 -39 1 1126 996 251 4 9 chr6 70958456 70958681 -78558356 + ID_B1 SINE B4 1 224 0 1 1126 436 235 33 25 chr6 70958700 70958822 -78558215 + PB1 SINE Alu 1 123 -4 1 1126 1264 169 14 9 chr6 70958871 70959086 -78557951 + B3 SINE B2 1 216 0 1 1126 349 120 0 0 chr6 70959104 70959154 -78557883 - B3 SINE B2 -159 57 8 1 1126 631 244 81 29 chr6 70959151 70959283 -78557754 + B3A SINE B2 17 160 -38 1 1126 483 100 0 0 chr6 70959283 70959353 -78557684 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1126 631 244 81 29 chr6 70959353 70959393 -78557644 + B3A SINE B2 161 198 0 1 1126 783 176 7 29 chr6 70959544 70959684 -78557353 + B1_Mur1 SINE Alu 1 137 -12 1 1126 935 119 206 0 chr6 70959711 70959728 -78557309 - B2_Mm2 SINE B2 0 195 179 1 1126 207 0 0 0 chr6 70959728 70959751 -78557286 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1126 935 119 206 0 chr6 70959751 70959893 -78557144 - B2_Mm2 SINE B2 -17 178 4 1 1126 642 326 66 112 chr6 70959919 70960107 -78556930 - MLT1C LTR MaLR -52 415 211 1 1126 353 58 19 0 chr6 70960107 70960159 -78556878 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1126 642 326 66 112 chr6 70960159 70960198 -78556839 - MLT1C LTR MaLR -257 210 188 1 1126 941 110 80 7 chr6 70960198 70960335 -78556702 + B1_Mus1 SINE Alu 2 148 0 1 1126 642 326 66 112 chr6 70960335 70960353 -78556684 - MLT1C LTR MaLR -280 187 184 1 1126 808 216 87 16 chr6 70960353 70960537 -78556500 - B3A SINE B2 -1 197 1 1 1126 642 326 66 112 chr6 70960537 70960683 -78556354 - MLT1C LTR MaLR -284 183 40 1 1126 750 189 17 0 chr6 70960699 70960874 -78556163 + CT-rich Low_complexity Low_complexity 2 179 0 1 1126 282 321 43 26 chr6 70960901 70961016 -78556021 - B1F1 SINE Alu 0 117 1 1 1126 486 176 0 0 chr6 70961106 70961180 -78555857 - B3 SINE B2 -141 75 2 1 1126 627 220 85 0 chr6 70961204 70961322 -78555715 - B1_Mur1 SINE Alu 0 149 22 1 1126 565 130 48 29 chr6 70961386 70961489 -78555548 + PB1D9 SINE Alu 2 106 -14 1 1126 684 54 0 0 chr6 70961722 70961814 -78555223 + ORR1A3 LTR MaLR 1 92 -234 1 1126 883 121 57 0 chr6 70961829 70961986 -78555051 - Lx9 LINE L1 -149 7495 7330 1 1126 375 216 107 41 chr6 70961986 70962118 -78554919 - ID_B1 SINE B4 -146 146 5 1 1126 187 258 55 96 chr6 70963695 70963768 -78553269 - MIRc SINE MIR -131 137 68 1 1126 470 179 0 13 chr6 70963783 70963862 -78553175 - ID_B1 SINE B4 0 224 147 1 1126 589 296 178 0 chr6 70963903 70963957 -78553080 - B4A SINE B4 -1 291 218 1 1126 1314 54 0 0 chr6 70963957 70964124 -78552913 + (TCTCCC)n Simple_repeat Simple_repeat 6 172 0 1 1126 589 296 178 0 chr6 70964124 70964316 -78552721 - B4A SINE B4 -75 217 2 1 1126 592 220 76 0 chr6 70964384 70964502 -78552535 - B1_Mur1 SINE Alu -17 132 6 1 1126 277 247 92 92 chr6 70964414 70964512 -78552525 - MT2B LTR ERVL -346 255 158 1 1126 228 254 31 31 chr6 70964545 70964563 -78552474 + polypurine Low_complexity Low_complexity 3 20 0 1 1126 1441 84 16 5 chr6 70964563 70964755 -78552282 + B2_Mm2 SINE B2 2 195 0 1 1126 228 254 31 31 chr6 70964755 70964801 -78552236 + polypurine Low_complexity Low_complexity 21 67 0 1 1126 275 283 0 16 chr6 70965285 70965346 -78551691 + MER2 DNA MER2_type 6 65 -280 1 1126 485 222 0 29 chr6 70965353 70965455 -78551582 + RSINE1 SINE B4 4 102 -63 1 1126 893 259 72 4 chr6 70965534 70965771 -78551266 + MER2 DNA MER2_type 92 344 -1 1 1126 497 343 115 22 chr6 70965779 70966101 -78550936 + ERVL-E-int LTR ERVL 2439 2790 -2877 1 1126 410 255 53 11 chr6 70966290 70966385 -78550652 - PB1D10 SINE Alu -1 116 18 1 1126 699 212 35 135 chr6 70966508 70966737 -78550300 - B3 SINE B2 -10 206 1 1 1126 541 274 0 8 chr6 70966851 70966969 -78550068 - RSINE1 SINE B4 -47 118 2 1 1126 641 248 32 0 chr6 70966978 70967103 -78549934 - ID_B1 SINE B4 -5 219 91 1 1126 270 313 66 37 chr6 70966983 70967119 -78549918 + YREP_Mm Unknown Unknown 187 326 -1486 1 1126 909 238 9 14 chr6 70967304 70967521 -78549516 + B3 SINE B2 1 216 0 1 1126 251 314 70 14 chr6 70968168 70968239 -78548798 + RSINE1 SINE B4 21 95 -70 1 1126 225 94 0 0 chr6 70968431 70968463 -78548574 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1126 689 133 0 81 chr6 70968463 70968586 -78548451 + B1_Mur1 SINE Alu 32 144 -5 1 1126 243 0 0 0 chr6 70968596 70968623 -78548414 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1126 1038 91 28 0 chr6 70969101 70969244 -78547793 - B1_Mus2 SINE Alu 0 147 1 1 1126 634 253 75 0 chr6 70969290 70969436 -78547601 + RSINE1 SINE B4 4 160 -5 1 1126 284 196 19 38 chr6 70969526 70969632 -78547405 + C-rich Low_complexity Low_complexity 5 108 0 1 1126 557 297 42 23 chr6 70969650 70969864 -78547173 - ID_B1 SINE B4 -4 220 3 1 1126 767 264 0 6 chr6 70969865 70970021 -78547016 - ID_B1 SINE B4 -66 158 4 1 1126 405 0 0 0 chr6 70970076 70970121 -78546916 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1126 279 0 0 0 chr6 70970121 70970151 -78546886 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1126 202 235 0 19 chr6 70970584 70970636 -78546401 + A-rich Low_complexity Low_complexity 2 52 0 1 1126 512 252 29 7 chr6 70970754 70970894 -78546143 - B1F SINE Alu -5 144 2 1 1126 184 306 16 16 chr6 70972012 70972075 -78544962 + MIR3 SINE MIR 92 154 -54 1 1126 239 253 23 11 chr6 70972350 70972438 -78544599 + GA-rich Low_complexity Low_complexity 2 90 0 1 1126 394 245 113 54 chr6 70972600 70972768 -78544269 + MTEa LTR MaLR 174 351 -28 1 1126 285 303 65 58 chr6 70972765 70972919 -78544118 - RSINE1 SINE B4 -8 157 3 1 1126 540 0 0 0 chr6 70972919 70972979 -78544058 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 1 1126 687 286 45 90 chr6 70972989 70973212 -78543825 - B3 SINE B2 -2 214 2 1 1126 248 289 45 97 chr6 70973236 70973370 -78543667 + LTR16D LTR ERVL 525 651 0 1 1126 421 281 45 30 chr6 70973523 70973721 -78543316 - L1MEe LINE L1 -3387 2759 2559 1 1126 499 272 52 13 chr6 70973851 70974004 -78543033 + B3A SINE B2 40 198 0 1 1126 216 291 74 46 chr6 70974036 70974144 -78542893 - BC1_Mm scRNA scRNA -40 112 2 1 1126 228 120 48 64 chr6 70974144 70974269 -78542768 + (TTATA)n Simple_repeat Simple_repeat 5 127 0 1 1126 457 267 75 43 chr6 70974284 70974332 -78542705 - L1MEe LINE L1 -3711 2455 2410 1 1126 1424 74 10 21 chr6 70974332 70974526 -78542511 - B2_Mm2 SINE B2 -1 194 3 1 1126 457 267 75 43 chr6 70974526 70974665 -78542372 - L1MEe LINE L1 -3757 2409 2262 1 1126 782 143 95 0 chr6 70974679 70974805 -78542232 - B1_Mur2 SINE Alu -7 142 5 1 1126 541 239 44 74 chr6 70975166 70975369 -78541668 - B3A SINE B2 0 198 2 1 1126 862 78 7 6 chr6 70975672 70975814 -78541223 + B1_Mur3 SINE Alu 5 147 -1 1 1126 677 227 200 0 chr6 70975814 70976103 -78540934 + MTEa LTR MaLR 28 374 -5 1 1126 256 143 0 87 chr6 70976767 70976813 -78540224 - PB1D9 SINE Alu -70 50 9 1 1126 226 196 0 80 chr6 70976777 70976827 -78540210 - ID_B1 SINE B4 -99 125 80 1 1126 837 226 110 50 chr6 70977094 70977313 -78539724 + B4A SINE B4 2 233 -59 1 1126 761 242 12 12 chr6 70977313 70977476 -78539561 + RSINE1 SINE B4 2 164 -1 1 1126 25 0 0 0 chr6 70977476 70977501 -78539536 + AT_rich Low_complexity Low_complexity 1 25 0 1 1126 285 246 58 0 chr6 70977515 70977584 -78539453 + B4A SINE B4 218 290 -2 1 1126 734 128 128 0 chr6 70977822 70977947 -78539090 + B1_Mur3 SINE Alu 1 141 -8 1 1126 246 172 60 130 chr6 70978699 70978799 -78538238 - ORR1E LTR MaLR 0 379 287 1 1126 489 292 119 34 chr6 70978874 70979051 -78537986 - ORR1E LTR MaLR -167 192 1 1 1126 912 206 54 3 chr6 70979145 70979333 -78537704 - B3 SINE B2 -3 195 2 1 1126 723 264 53 24 chr6 70979514 70979720 -78537317 + ID_B1 SINE B4 11 222 -2 1 1126 633 238 92 18 chr6 70979833 70979996 -78537041 + B3A SINE B2 1 175 -23 1 1126 254 50 0 24 chr6 70980114 70980155 -78536882 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1126 424 244 0 0 chr6 70980165 70980247 -78536790 - B1F2 SINE Alu -26 123 42 1 1126 335 285 58 10 chr6 70980264 70980380 -78536657 - PB1D10 SINE Alu -1 116 2 1 1126 216 275 145 32 chr6 70980380 70980504 -78536533 + MIRb SINE MIR 120 257 -11 1 1126 291 254 15 0 chr6 70980505 70980572 -78536465 + PB1D10 SINE Alu 46 113 -4 1 1126 272 276 116 10 chr6 70980726 70980853 -78536184 + MIRb SINE MIR 21 165 -103 1 1126 1400 227 84 12 chr6 70980947 70981268 -78535769 - MTD LTR MaLR -75 344 1 1 1126 396 228 88 10 chr6 70981460 70981562 -78535475 + PB1D9 SINE Alu 1 110 -10 1 1126 2231 156 22 99 chr6 70981616 70981771 -78535266 + MTC LTR MaLR 1 119 -302 1 1126 1040 84 162 6 chr6 70981771 70981938 -78535099 - B2_Mm1t SINE B2 0 193 1 1 1126 2231 156 22 99 chr6 70981938 70982238 -78534799 + MTC LTR MaLR 120 421 0 1 1126 336 275 119 0 chr6 70982521 70982630 -78534407 - PB1 SINE Alu -2 125 4 1 1126 598 243 51 36 chr6 70982642 70982822 -78534215 - B3 SINE B2 -4 191 16 1 1126 1731 251 14 6 chr6 70982936 70983301 -78533736 + MTE2b LTR MaLR 6 373 -6 1 1126 321 287 64 23 chr6 70983442 70983613 -78533424 + L1M5 LINE L1 5254 5431 -763 1 1126 567 0 0 0 chr6 70983642 70983705 -78533332 + (CTATT)n Simple_repeat Simple_repeat 2 64 0 1 1126 972 202 6 17 chr6 70983706 70983882 -78533155 - B3 SINE B2 -38 178 5 1 1126 370 280 9 9 chr6 70983907 70984015 -78533022 + L1M5 LINE L1 5469 5576 -618 1 1126 186 197 53 0 chr6 70984428 70984504 -78532533 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 1 1126 628 248 10 3 chr6 70984534 70984846 -78532191 + (TGGA)n Simple_repeat Simple_repeat 1 314 0 1 1126 241 233 0 141 chr6 70985095 70985156 -78531881 + B2_Mm2 SINE B2 2 50 -145 1 1126 656 239 157 42 chr6 70985156 70985418 -78531619 - RLTR10A LTR ERVK 0 411 104 1 1126 2296 297 54 59 chr6 70985437 70988010 -78529027 - IAP-d-int LTR ERVK -1462 5080 992 1 1126 393 260 46 46 chr6 70988013 70988166 -78528871 - IAP-d-int LTR ERVK -4149 2393 2241 1 1126 470 165 61 52 chr6 70988363 70988478 -78528559 - RLTR10-int LTR ERVK -1554 433 318 1 1126 573 270 127 13 chr6 70988494 70988755 -78528282 - RLTR10A LTR ERVK 0 411 104 1 1126 3219 53 0 2 chr6 70988784 70989179 -78527858 - MTB LTR MaLR -6 394 1 1 1126 643 194 0 58 chr6 70989181 70989318 -78527719 + B2_Mm2 SINE B2 53 181 -14 1 1126 667 276 26 0 chr6 70989395 70989547 -78527490 - RSINE1 SINE B4 0 165 10 1 1126 829 201 0 0 chr6 70989572 70989711 -78527326 - U1 snRNA snRNA -4 161 23 1 1126 575 275 198 40 chr6 70989784 70990261 -78526776 - L2a LINE L2 -15 3411 2856 1 1126 355 19 74 0 chr6 70990280 70990334 -78526703 + (TTTG)n Simple_repeat Simple_repeat 4 61 0 1 1126 893 242 33 47 chr6 70990334 70990546 -78526491 - ID_B1 SINE B4 -14 210 2 1 1126 415 205 36 0 chr6 70990834 70990917 -78526120 + PB1D7 SINE Alu 35 120 0 1 1126 425 277 0 11 chr6 70991648 70991743 -78525294 - B3 SINE B2 0 216 123 1 1126 245 103 77 0 chr6 70991731 70991770 -78525267 - B2_Mm2 SINE B2 -153 42 1 1 1126 352 133 0 16 chr6 70991770 70991830 -78525207 + ID_B1 SINE B4 166 224 0 1 1126 333 230 117 29 chr6 70991929 70992032 -78525005 - B3A SINE B2 -38 157 46 1 1126 343 252 99 108 chr6 70992179 70992290 -78524747 + PB1D10 SINE Alu 7 116 -1 1 1126 443 195 14 0 chr6 70992340 70992420 -78524617 + ID4 SINE ID 10 90 -62 1 1126 1433 240 49 17 chr6 70992455 70992803 -78524234 - ORR1E LTR MaLR 0 359 1 1 1126 500 218 39 10 chr6 70993047 70993149 -78523888 + RSINE1 SINE B4 35 139 -26 1 1126 840 215 102 79 chr6 70993159 70993322 -78523715 + B3A SINE B2 2 166 -29 1 1126 474 18 0 0 chr6 70993322 70993377 -78523660 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1126 559 215 102 79 chr6 70993377 70993390 -78523647 + B2_Mm2 SINE B2 167 182 -13 1 1126 239 173 19 0 chr6 70993424 70993476 -78523561 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1126 261 83 0 0 chr6 70993476 70993512 -78523525 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1126 346 226 107 111 chr6 70993536 70993674 -78523363 - L1ME1 LINE L1 -186 5978 5861 1 1126 1169 75 0 0 chr6 70993674 70993821 -78523216 - B1_Mm SINE Alu 0 147 1 1 1126 346 223 111 109 chr6 70993821 70993969 -78523068 - L1ME1 LINE L1 -306 5873 5711 1 1126 273 136 30 15 chr6 70993969 70994036 -78523001 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 1126 32 67 0 0 chr6 70994041 70994101 -78522936 + AT_rich Low_complexity Low_complexity 1 60 0 1 1126 374 195 0 11 chr6 70994164 70994252 -78522785 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1126 2096 189 73 57 chr6 70994254 70994730 -78522307 - MT2A LTR ERVL -44 489 6 1 1126 1217 92 17 11 chr6 70994837 70994992 -78522045 + B2_Mm2 SINE B2 1 154 -41 1 1126 279 0 0 0 chr6 70994992 70995023 -78522014 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 1126 1217 92 17 11 chr6 70995023 70995042 -78521995 + B2_Mm2 SINE B2 155 176 -19 1 1126 252 304 133 0 chr6 70995043 70995178 -78521859 - L1ME1 LINE L1 -545 5628 5476 1 1126 378 195 0 0 chr6 70995219 70995296 -78521741 + T-rich Low_complexity Low_complexity 1 77 0 1 1126 654 210 25 0 chr6 70995373 70995492 -78521545 - B3 SINE B2 -93 123 2 1 1126 240 293 56 24 chr6 70995495 70995621 -78521416 + MTE-int LTR MaLR 1412 1541 -39 1 1126 1134 53 0 0 chr6 70995631 70995764 -78521273 + B1_Mm SINE Alu 2 134 -13 1 1126 258 32 0 0 chr6 70995767 70995798 -78521239 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1126 1310 309 25 15 chr6 70995799 70996113 -78520924 + MTE-int LTR MaLR 947 1265 -315 1 1126 1008 215 9 9 chr6 70996113 70996324 -78520713 - B3 SINE B2 -3 213 3 1 1126 1310 309 25 15 chr6 70996324 70996407 -78520630 + MTE-int LTR MaLR 1266 1348 -232 1 1126 623 222 31 31 chr6 70996356 70996486 -78520551 - B1_Mur1 SINE Alu -8 141 12 1 1126 251 247 58 189 chr6 70996415 70996546 -78520491 - MT2B2 LTR ERVL -351 233 125 1 1126 2086 142 18 60 chr6 70996546 70996927 -78520110 + ORR1B2 LTR MaLR 3 367 0 1 1126 251 247 58 189 chr6 70996927 70996985 -78520052 - MT2B2 LTR ERVL -460 124 69 1 1126 1201 68 0 0 chr6 70997124 70997271 -78519766 + B1_Mus2 SINE Alu 1 147 0 1 1126 213 103 0 0 chr6 70997389 70997418 -78519619 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 1 1126 261 0 0 0 chr6 70997431 70997460 -78519577 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1126 550 230 24 35 chr6 70997460 70997603 -78519434 - B1_Mur2 SINE Alu 0 149 1 1 1126 547 175 31 0 chr6 70999335 70999432 -78517605 + PB1D10 SINE Alu 18 117 0 1 1126 468 91 0 0 chr6 70999437 70999503 -78517534 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 1 1126 336 298 9 19 chr6 70999509 70999615 -78517422 + GA-rich Low_complexity Low_complexity 3 107 0 1 1126 260 265 42 25 chr6 71000525 71000645 -78516392 - MIR SINE MIR -37 225 104 1 1126 180 0 0 0 chr6 71000645 71000665 -78516372 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1126 351 0 0 0 chr6 71001491 71001530 -78515507 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1126 310 333 8 40 chr6 71001531 71001656 -78515381 - RSINE1 SINE B4 -13 152 32 4 1126 765 224 70 6 chr6 71001703 71001874 -78515163 - B3A SINE B2 -12 186 5 5 1126 559 307 78 51 chr6 71002072 71002225 -78514812 - Lx8 LINE L1 -1579 5894 5731 6 1126 1538 223 86 35 chr6 71002225 71002620 -78514417 + MTD LTR MaLR 5 419 0 7 1126 559 307 78 51 chr6 71002620 71002761 -78514276 - Lx8 LINE L1 -1743 5730 5593 6 1126 1318 142 71 0 chr6 71002998 71003209 -78513828 + URR1A DNA MER1_type 1 226 0 8 1126 364 235 47 0 chr6 71003634 71003719 -78513318 + PB1D10 SINE Alu 21 109 -8 9 1126 609 176 64 0 chr6 71003917 71004042 -78512995 - ID_B1 SINE B4 -2 222 90 1 1126 439 266 35 17 chr6 71004181 71004296 -78512741 - PB1D10 SINE Alu 0 117 1 1 1126 314 296 0 0 chr6 71004657 71004738 -78512299 - B1F2 SINE Alu -18 131 51 1 1126 1627 189 58 102 chr6 71004738 71005150 -78511887 - RMER19C LTR ERVK 0 611 218 1 1126 216 0 0 0 chr6 71005156 71005180 -78511857 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1126 274 158 0 0 chr6 71005180 71005237 -78511800 - RMER19C LTR ERVK -554 57 1 1 1126 226 266 16 0 chr6 71005288 71005352 -78511685 + ID4 SINE ID 2 66 -17 1 1126 206 192 19 0 chr6 71005353 71005405 -78511632 + GA-rich Low_complexity Low_complexity 2 54 0 1 1126 1369 154 25 0 chr6 71005581 71005821 -78511216 - MTC LTR MaLR -69 352 107 1 1126 819 131 0 30 chr6 71005822 71005956 -78511081 + B3 SINE B2 1 130 -86 1 1126 315 161 15 45 chr6 71005961 71006042 -78510995 + B1_Mur4 SINE Alu 42 150 0 1 1126 232 135 19 19 chr6 71006046 71006099 -78510938 + A-rich Low_complexity Low_complexity 2 54 0 2 1126 494 91 0 13 chr6 71006123 71006201 -78510836 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 2 1126 531 169 31 10 chr6 71006204 71006300 -78510737 - MTC LTR MaLR -323 98 1 1 1126 639 193 55 41 chr6 71006300 71006446 -78510591 + B1_Mus1 SINE Alu 1 148 0 2 1126 246 32 0 0 chr6 71006521 71006552 -78510485 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1126 626 268 55 20 chr6 71006552 71006754 -78510283 - ID_B1 SINE B4 -11 213 5 2 1126 528 59 0 0 chr6 71006766 71006834 -78510203 + (TTTTC)n Simple_repeat Simple_repeat 2 69 0 2 1126 1125 89 7 0 chr6 71006834 71006980 -78510057 - B1_Mus2 SINE Alu 0 147 1 2 1126 291 114 0 0 chr6 71007158 71007202 -78509835 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 2 1126 216 171 0 0 chr6 71007769 71007804 -78509233 + G-rich Low_complexity Low_complexity 3 37 0 2 1126 188 163 23 0 chr6 71008086 71008129 -78508908 + CT-rich Low_complexity Low_complexity 5 48 0 2 1126 356 286 54 130 chr6 71008159 71008344 -78508693 - B3A SINE B2 -16 182 12 3 1126 377 186 0 44 chr6 71008643 71008733 -78508304 - PB1D10 SINE Alu 0 117 32 3 1126 497 271 81 27 chr6 71009124 71009310 -78507727 + B3A SINE B2 3 198 0 3 1126 425 133 13 0 chr6 71009387 71009462 -78507575 + (TC)n Simple_repeat Simple_repeat 2 77 0 3 1126 606 204 65 7 chr6 71009647 71009785 -78507252 - B1_Mur2 SINE Alu -1 148 3 3 1126 227 269 77 136 chr6 71009785 71009822 -78507215 - MT2B LTR ERVL -444 157 130 3 1126 636 274 21 14 chr6 71010504 71010704 -78506333 + ID_B1 SINE B4 2 203 -21 3 1126 850 133 0 13 chr6 71010722 71010874 -78506163 + (GAA)n Simple_repeat Simple_repeat 3 152 0 3 1126 617 276 61 58 chr6 71011454 71011558 -78505479 + RLTR15 LTR ERVK 1 109 -250 3 1126 810 110 0 0 chr6 71011558 71011704 -78505333 + (GA)n Simple_repeat Simple_repeat 2 147 0 3 1126 617 276 61 58 chr6 71011704 71011941 -78505096 + RLTR15 LTR ERVK 110 342 -17 3 1126 865 218 0 0 chr6 71011951 71012121 -78504916 - B3 SINE B2 -46 170 1 4 1126 484 230 42 56 chr6 71012125 71012268 -78504769 - ID_B1 SINE B4 -3 221 81 4 1126 1283 218 64 35 chr6 71012750 71013092 -78503945 + ORR1D2 LTR MaLR 8 359 -11 4 1126 488 243 178 10 chr6 71013297 71013408 -78503629 - MLT1B LTR MaLR 0 390 269 4 1126 513 104 0 0 chr6 71013408 71013485 -78503552 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1126 488 243 178 10 chr6 71013485 71013581 -78503456 - MLT1B LTR MaLR -122 268 148 4 1126 638 252 15 0 chr6 71013584 71013719 -78503318 + ID_B1 SINE B4 85 221 -3 4 1126 486 294 194 5 chr6 71013765 71013987 -78503050 + B4 SINE B4 1 264 -28 4 1126 676 200 0 0 chr6 71014014 71014134 -78502903 - PB1D9 SINE Alu 0 120 1 4 1126 809 197 9 9 chr6 71014306 71014640 -78502397 + CT-rich Low_complexity Low_complexity 1 333 0 4 1126 868 233 17 0 chr6 71015881 71016061 -78500976 - B4A SINE B4 -1 291 109 4 1126 1055 208 75 35 chr6 71016731 71017050 -78499987 + MER119 DNA MER1_type 251 582 -1 5 1126 210 37 0 0 chr6 71017203 71017230 -78499807 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 1126 305 242 0 0 chr6 71017880 71017946 -78499091 + ID_B1 SINE B4 139 204 -20 5 1126 355 250 0 11 chr6 71018558 71018651 -78498386 - ID_B1 SINE B4 -30 194 103 5 1126 350 279 36 9 chr6 71018651 71018670 -78498367 - B1F SINE Alu -33 116 2 5 1126 297 285 55 29 chr6 71018719 71018895 -78498142 + MIR SINE MIR 61 239 -23 5 1126 204 234 0 111 chr6 71019831 71019903 -78497134 - L2b LINE L2 -8 3367 3304 5 1126 774 253 116 58 chr6 71020105 71020401 -78496636 - MLT1A0 LTR MaLR 0 365 44 5 1126 231 342 8 51 chr6 71020401 71020518 -78496519 - PB1D10 SINE Alu -1 116 5 5 1126 774 253 116 58 chr6 71020518 71020565 -78496472 - MLT1A0 LTR MaLR -322 43 2 5 1126 239 268 71 24 chr6 71020685 71020769 -78496268 - L2c LINE L2 -1 3386 3299 5 1126 766 197 7 7 chr6 71021159 71021307 -78495730 + B3 SINE B2 1 148 -68 6 1126 900 195 184 18 chr6 71021332 71021609 -78495428 + MTD LTR MaLR 97 419 0 6 1126 646 277 43 21 chr6 71021837 71022025 -78495012 - B3A SINE B2 -6 192 1 6 1126 460 253 0 62 chr6 71022042 71022131 -78494906 + Tigger6a DNA MER2_type 67 150 -933 6 1126 279 0 0 0 chr6 71022131 71022162 -78494875 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1126 988 144 0 14 chr6 71022162 71022310 -78494727 - B1_Mur3 SINE Alu -3 146 1 6 1126 460 253 0 62 chr6 71022310 71022379 -78494658 + Tigger6a DNA MER2_type 151 215 -868 6 1126 201 143 0 0 chr6 71022945 71022980 -78494057 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1126 417 83 0 0 chr6 71023944 71023957 -78493080 + (GA)n Simple_repeat Simple_repeat 1 13 0 6 1126 902 113 0 7 chr6 71023957 71024100 -78492937 + (GAA)n Simple_repeat Simple_repeat 2 143 0 6 1126 417 83 0 0 chr6 71024100 71024146 -78492891 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 1126 248 286 0 0 chr6 71024369 71024425 -78492612 + GA-rich Low_complexity Low_complexity 5 60 0 7 1126 360 0 0 0 chr6 71025160 71025200 -78491837 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1126 386 192 41 0 chr6 71025292 71025365 -78491672 + B1_Mur2 SINE Alu 74 149 0 7 1126 420 295 33 60 chr6 71025458 71025642 -78491395 - B3A SINE B2 -16 182 4 7 1126 298 292 33 66 chr6 71025792 71025913 -78491124 + PB1D10 SINE Alu 1 117 0 7 1126 879 98 8 0 chr6 71026083 71026216 -78490821 + B1_Mus1 SINE Alu 14 147 -1 7 1126 25 51 0 0 chr6 71026244 71026283 -78490754 + AT_rich Low_complexity Low_complexity 1 39 0 7 1126 316 271 208 8 chr6 71026288 71026418 -78490619 - RSINE1 SINE B4 -8 157 2 7 1126 282 214 210 59 chr6 71026724 71026843 -78490194 - B1_Mur2 SINE Alu -3 146 10 7 1126 191 339 31 0 chr6 71027229 71027294 -78489743 - L2 LINE L2 -1181 2238 2172 7 1126 393 22 0 0 chr6 71028014 71028060 -78488977 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1126 195 42 0 0 chr6 71028115 71028139 -78488898 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 8 1126 660 303 95 16 chr6 71028242 71028547 -78488490 - MER58B DNA MER1_type -10 331 3 8 1126 477 165 0 0 chr6 71028654 71028733 -78488304 + B3 SINE B2 3 81 -135 8 1126 1190 55 7 0 chr6 71028898 71029044 -78487993 + B1_Mus1 SINE Alu 1 147 -1 8 1126 597 110 0 0 chr6 71029079 71029170 -78487867 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 8 1126 346 254 178 0 chr6 71029378 71029496 -78487541 - B4 SINE B4 -2 290 152 8 1126 398 155 5 25 chr6 71029567 71029659 -78487378 - B1_Mur1 SINE Alu -1 148 56 8 1126 379 195 98 0 chr6 71029630 71029712 -78487325 - B4 SINE B4 -194 98 9 8 1126 1099 150 90 19 chr6 71030159 71030370 -78486667 - URR1A DNA MER1_type 0 226 1 8 1126 1128 33 13 7 chr6 71030383 71030567 -78486470 - L1Md_A LINE L1 0 6582 6431 8 1126 378 267 58 15 chr6 71030724 71030800 -78486237 + B1F SINE Alu 4 80 -69 9 1126 707 237 95 21 chr6 71030800 71030985 -78486052 + B3 SINE B2 2 200 -16 9 1126 225 0 0 0 chr6 71030985 71031010 -78486027 + (CAAAT)n Simple_repeat Simple_repeat 4 28 0 9 1126 378 267 58 15 chr6 71031010 71031074 -78485963 + B1F SINE Alu 81 146 -3 9 1126 668 175 5 0 chr6 71032581 71032806 -78484231 + (TG)n Simple_repeat Simple_repeat 1 226 0 9 1126 387 0 0 0 chr6 71033071 71033114 -78483923 + (TC)n Simple_repeat Simple_repeat 2 44 0 9 1126 223 278 50 40 chr6 71033222 71033323 -78483714 - MIRb SINE MIR -139 129 28 9 1126 216 0 0 0 chr6 71033884 71033908 -78483129 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1126 442 273 14 14 chr6 71033949 71034094 -78482943 + MLT1B LTR MaLR 38 182 -208 9 1126 883 262 100 0 chr6 71034096 71034336 -78482701 + B4A SINE B4 9 272 -20 9 1126 537 16 0 0 chr6 71034365 71034427 -78482610 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1126 260 294 0 0 chr6 71034697 71034765 -78482272 + MIRc SINE MIR 118 185 -83 1 1126 911 256 19 0 chr6 71035178 71035385 -78481652 - B3 SINE B2 -5 211 1 1 1126 357 288 73 4 chr6 71035671 71035789 -78481248 - B1F SINE Alu -20 127 8 1 1126 4359 226 89 39 chr6 71036175 71037484 -78479553 - Lx7 LINE L1 0 7696 6210 1 1126 204 294 0 0 chr6 71038331 71038382 -78478655 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1126 1046 271 3 59 chr6 71038650 71038956 -78478081 + B4 SINE B4 1 289 -3 1 1126 25 31 0 0 chr6 71040328 71040360 -78476677 + AT_rich Low_complexity Low_complexity 1 32 0 1 1126 322 260 0 0 chr6 71040378 71040451 -78476586 + ID_B1 SINE B4 150 222 -2 1 1127 216 0 0 0 chr6 71042428 71042452 -78474585 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1127 624 242 141 47 chr6 71042539 71042773 -78474264 + ERVL-E-int LTR ERVL 5311 5566 -101 1 1127 276 206 88 0 chr6 71043340 71043408 -78473629 + ID2 SINE ID 2 75 -8 1 1127 21 0 0 0 chr6 71043782 71043803 -78473234 + GC_rich Low_complexity Low_complexity 1 21 0 1 1127 301 315 72 24 chr6 71044141 71044307 -78472730 - MIRc SINE MIR -88 180 7 1 1127 646 219 197 0 chr6 71044362 71044545 -78472492 + ID_B1 SINE B4 4 222 -2 1 1127 209 0 97 0 chr6 71044549 71044580 -78472457 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 1 1127 416 302 157 11 chr6 71044873 71045170 -78471867 - MLT1F2 LTR MaLR -216 464 18 1 1127 374 286 56 0 chr6 71045249 71045375 -78471662 - Cheshire DNA MER1_type -2145 275 143 1 1127 634 276 29 12 chr6 71045417 71045589 -78471448 - B3A SINE B2 -23 175 1 1 1127 729 215 31 19 chr6 71045662 71045823 -78471214 - RSINE1 SINE B4 0 165 3 1 1127 1410 94 5 20 chr6 71045914 71046110 -78470927 + B2_Mm1t SINE B2 1 193 0 1 1127 813 247 59 41 chr6 71046430 71046740 -78470297 + B4 SINE B4 3 252 -40 1 1127 25 0 0 0 chr6 71046781 71046806 -78470231 + AT_rich Low_complexity Low_complexity 1 25 0 1 1127 259 327 71 18 chr6 71046921 71047033 -78470004 - B4A SINE B4 -60 232 115 1 1127 642 128 73 0 chr6 71047074 71047183 -78469854 - B1_Mus2 SINE Alu -13 134 18 1 1127 2840 135 82 2 chr6 71048228 71048725 -78468312 - RLTR17 LTR ERVK 0 692 156 1 1127 1348 173 140 23 chr6 71048976 71049319 -78467718 - RMER13A LTR ERVK -392 468 86 1 1127 708 264 178 4 chr6 71049331 71049633 -78467404 - MTD LTR MaLR -54 365 12 1 1127 768 145 0 0 chr6 71049633 71049764 -78467273 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 1 1127 13311 72 19 18 chr6 71049764 71049800 -78467237 - MusHAL1 LINE L1 -726 2833 2806 1 1127 1567 42 16 16 chr6 71049800 71049994 -78467043 - B2_Mm2 SINE B2 0 195 2 1 1127 13311 72 19 18 chr6 71049994 71051855 -78465182 - MusHAL1 LINE L1 -754 2805 934 1 1127 1721 83 12 0 chr6 71051858 71052099 -78464938 - MusHAL1 LINE L1 -2922 638 188 1 1127 250 236 125 0 chr6 71052105 71052177 -78464860 - RMER13A LTR ERVK -779 81 1 1 1127 386 250 83 7 chr6 71052257 71052402 -78464635 + L1MD3 LINE L1 7832 7987 -8 1 1127 534 31 0 0 chr6 71052467 71052531 -78464506 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1127 9053 63 6 1 chr6 71052802 71053943 -78463094 + L1_Mm LINE L1 4160 5300 -583 1 1127 5456 49 9 0 chr6 71053943 71054613 -78462424 + L1Md_F2 LINE L1 5907 6582 0 1 1127 9053 63 6 1 chr6 71054613 71054631 -78462406 + L1_Mm LINE L1 5301 5324 -559 1 1127 247 303 90 26 chr6 71055181 71055337 -78461700 - B4A SINE B4 -119 173 8 1 1127 236 255 9 75 chr6 71055429 71055535 -78461502 - L1MC LINE L1 -1972 4174 4076 1 1127 190 135 0 55 chr6 71055558 71055613 -78461424 + T-rich Low_complexity Low_complexity 4 55 0 1 1127 637 221 72 94 chr6 71055802 71055958 -78461079 + B3A SINE B2 18 168 -27 1 1127 453 19 0 0 chr6 71055958 71056012 -78461025 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1127 421 221 72 94 chr6 71056012 71056035 -78461002 + B2_Mm2 SINE B2 169 193 -2 1 1127 218 242 0 46 chr6 71056054 71056119 -78460918 + PB1D10 SINE Alu 56 117 0 1 1127 192 97 0 0 chr6 71056119 71056150 -78460887 + (CAA)n Simple_repeat Simple_repeat 1 31 0 1 1127 1306 217 128 25 chr6 71057013 71057381 -78459656 - MTD LTR MaLR 0 419 14 1 1127 2730 163 59 8 chr6 71057875 71058364 -78458673 + RLTR28 LTR ERVL 9 522 -2 1 1127 439 266 43 0 chr6 71058586 71058680 -78458357 - ID_B1 SINE B4 -124 100 3 1 1127 537 306 0 7 chr6 71058742 71058887 -78458150 - RSINE1 SINE B4 -19 146 3 1 1127 2437 102 21 73 chr6 71059612 71060034 -78457003 - RLTR11B LTR ERVK 0 453 54 1 1127 538 257 83 61 chr6 71060848 71061076 -78455961 - RMER2 LTR ERV1 -27 540 308 1 1127 180 0 0 0 chr6 71061258 71061278 -78455759 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1127 209 299 132 78 chr6 71061500 71061743 -78455294 + L3 LINE CR1 4128 4383 -106 1 1127 274 204 200 22 chr6 71062252 71062342 -78454695 + ORR1C2 LTR MaLR 1 106 -268 1 1127 3604 124 45 68 chr6 71062706 71063321 -78453716 - MT2B LTR ERVL 0 601 1 1 1127 1151 185 80 28 chr6 71063400 71063513 -78453524 + ORR1C2 LTR MaLR 122 234 -150 1 1127 180 0 0 0 chr6 71063513 71063533 -78453504 + (CCTG)n Simple_repeat Simple_repeat 3 22 0 1 1127 1151 185 80 28 chr6 71063533 71063669 -78453368 + ORR1C2 LTR MaLR 235 384 0 1 1127 522 280 38 0 chr6 71064614 71064746 -78452291 + RSINE1 SINE B4 1 137 -28 1 1127 24 32 0 0 chr6 71064761 71064792 -78452245 + AT_rich Low_complexity Low_complexity 1 31 0 1 1127 256 207 96 12 chr6 71064847 71064930 -78452107 - L1MC5 LINE L1 -477 7484 7395 1 1127 528 16 0 0 chr6 71064934 71064995 -78452042 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1127 296 200 21 158 chr6 71064997 71065092 -78451945 - ID_B1 SINE B4 -9 215 134 1 1127 244 227 0 0 chr6 71065443 71065487 -78451550 + ORR1E LTR MaLR 25 68 -302 1 1127 620 308 71 50 chr6 71065570 71065975 -78451062 - RLTR16 LTR ERVK -17 488 32 1 1127 702 280 30 92 chr6 71065983 71066286 -78450751 + ORR1E LTR MaLR 74 357 -2 1 1127 22 0 0 0 chr6 71066532 71066554 -78450483 + GC_rich Low_complexity Low_complexity 1 22 0 1 1127 301 213 26 105 chr6 71066598 71066750 -78450287 + Lx9 LINE L1 7505 7644 0 1 1127 1052 91 119 18 chr6 71066753 71066921 -78450116 + B2_Mm2 SINE B2 2 186 -9 1 1127 2672 169 18 44 chr6 71066968 71067536 -78449501 - RLTR31_Mur LTR ERVK 0 553 1 1 1127 826 147 228 6 chr6 71067574 71067745 -78449292 + B3 SINE B2 5 213 -3 1 1127 26 30 0 0 chr6 71067837 71067870 -78449167 + AT_rich Low_complexity Low_complexity 1 33 0 1 1127 250 292 155 10 chr6 71067919 71068016 -78449021 + ID_B1 SINE B4 66 176 -48 1 1127 460 219 62 10 chr6 71067936 71068033 -78449004 + PB1D10 SINE Alu 11 112 -5 1 1127 260 292 55 110 chr6 71068249 71068376 -78448661 + MTEb LTR MaLR 260 379 0 1 1127 226 250 27 40 chr6 71068505 71068530 -78448507 + tRNA-Ala-GCY_ tRNA tRNA 2 25 -50 1 1127 2045 114 97 20 chr6 71068530 71068871 -78448166 + ORR1B2 LTR MaLR 1 367 0 1 1127 226 250 27 40 chr6 71068871 71068920 -78448117 + tRNA-Ala-GCY_ tRNA tRNA 26 75 0 1 1127 306 299 104 7 chr6 71068922 71069057 -78447980 + LTR16A LTR ERVL 35 182 -269 1 1127 351 0 0 0 chr6 71069297 71069336 -78447701 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1127 452 345 55 21 chr6 71069338 71069483 -78447554 - RSINE1 SINE B4 -13 152 3 1 1127 207 114 0 0 chr6 71070165 71070200 -78446837 + (C)n Simple_repeat Simple_repeat 1 35 0 1 1127 425 282 17 68 chr6 71070412 71070446 -78446591 + ID SINE ID 1 27 -197 1 1127 2022 141 98 3 chr6 71070446 71070794 -78446243 - ORR1C2 LTR MaLR -1 383 3 1 1127 425 282 17 68 chr6 71070794 71070877 -78446160 + ID_B1 SINE B4 28 112 -112 1 1127 356 261 185 0 chr6 71070916 71071035 -78446002 - B1F2 SINE Alu -6 143 3 1 1127 649 252 7 21 chr6 71071053 71071195 -78445842 - ID_B1 SINE B4 -5 219 80 1 1127 667 210 158 6 chr6 71071398 71071556 -78445481 - B3A SINE B2 -15 183 2 1 1127 550 291 36 43 chr6 71071684 71071824 -78445213 - RSINE1 SINE B4 -23 142 4 1 1127 242 313 0 0 chr6 71071845 71071928 -78445109 + L1MA8 LINE L1 6047 6129 -162 1 1127 1266 193 209 0 chr6 71072152 71072448 -78444589 - MTD LTR MaLR -36 383 26 1 1127 714 133 21 56 chr6 71072561 71072704 -78444333 + ORR1B1 LTR MaLR 41 178 -216 1 1127 540 0 0 0 chr6 71072783 71072843 -78444194 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1127 399 226 158 85 chr6 71073521 71073650 -78443387 + B4 SINE B4 138 269 -23 1 1127 285 0 67 0 chr6 71073652 71073697 -78443340 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1127 472 247 97 26 chr6 71074141 71074295 -78442742 + B4A SINE B4 116 280 -12 1 1127 285 29 0 0 chr6 71074350 71074384 -78442653 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 1 1127 315 0 0 0 chr6 71074395 71074430 -78442607 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1127 23 33 0 0 chr6 71074488 71074518 -78442519 + AT_rich Low_complexity Low_complexity 1 30 0 1 1127 316 231 44 44 chr6 71074973 71075041 -78441996 + L1MEg LINE L1 1857 1924 -4160 1 1127 363 222 0 80 chr6 71075048 71075136 -78441901 + B4 SINE B4 186 266 -26 1 1127 351 250 0 0 chr6 71075146 71075206 -78441831 + ID4_ SINE ID 10 69 -14 1 1127 358 189 14 0 chr6 71075629 71075703 -78441334 + ORR1B1 LTR MaLR 22 96 -298 1 1127 354 242 21 42 chr6 71076049 71076144 -78440893 - RSINE1 SINE B4 -62 103 11 1 1127 577 226 99 83 chr6 71076749 71076996 -78440041 + B4 SINE B4 2 248 -44 1 1127 182 343 0 15 chr6 71077086 71077154 -78439883 + MIRc SINE MIR 202 268 0 1 1127 662 194 0 0 chr6 71078231 71078334 -78438703 - B1_Mur2 SINE Alu -46 103 1 1 1127 324 0 0 0 chr6 71078349 71078385 -78438652 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1127 708 270 58 16 chr6 71078396 71078584 -78438453 - B3A SINE B2 0 198 3 1 1127 960 128 0 0 chr6 71080112 71080268 -78436769 + (TCTA)n Simple_repeat Simple_repeat 1 156 0 2 1127 243 0 0 0 chr6 71080268 71080294 -78436743 + (CAGC)n Simple_repeat Simple_repeat 2 28 0 2 1127 805 149 56 21 chr6 71080294 71080452 -78436585 - B2_Mm2 SINE B2 -26 172 1 2 1127 326 351 9 0 chr6 71080790 71080901 -78436136 - MIR SINE MIR -36 226 115 2 1127 1552 212 97 129 chr6 71081081 71081606 -78435431 + RLTR18B LTR ERVK 1 508 -4 2 1127 586 313 98 49 chr6 71082259 71082484 -78434553 - B4A SINE B4 -56 236 1 2 1127 222 277 89 62 chr6 71082976 71083122 -78433915 + MIRc SINE MIR 33 182 -86 2 1127 631 351 53 26 chr6 71083123 71083172 -78433865 + MER2B DNA MER2_type 25 73 -263 2 1127 381 228 138 23 chr6 71083172 71083302 -78433735 + B1F1 SINE Alu 5 149 0 2 1127 882 296 32 8 chr6 71083302 71083556 -78433481 + MER2 DNA MER2_type 74 345 0 2 1127 185 267 128 37 chr6 71083746 71083855 -78433182 - MIRb SINE MIR -138 130 12 2 1127 225 330 107 84 chr6 71084830 71085055 -78431982 + LTR79 LTR ERVL 268 497 -30 2 1127 462 329 100 16 chr6 71085192 71085582 -78431455 + MLT1L LTR MaLR 163 608 -2 2 1127 674 194 83 0 chr6 71085674 71085818 -78431219 - ORR1D1 LTR MaLR -10 364 209 2 1127 287 111 0 0 chr6 71085821 71085866 -78431171 - ORR1D1 LTR MaLR -121 253 209 2 1127 1308 156 67 4 chr6 71085869 71086107 -78430930 - ORR1D1 LTR MaLR -121 253 1 2 1127 1142 160 55 5 chr6 71086107 71086308 -78430729 - ORR1D1-int LTR MaLR 0 1370 1160 2 1127 346 248 37 65 chr6 71086328 71086436 -78430601 + RSINE1 SINE B4 44 148 -17 2 1127 1807 196 30 19 chr6 71087234 71087604 -78429433 - ORR1D1 LTR MaLR 0 374 1 2 1127 1166 183 14 27 chr6 71087664 71087883 -78429154 - B3 SINE B2 0 216 1 2 1127 1163 196 156 38 chr6 71089028 71089367 -78427670 + MTEb LTR MaLR 1 379 0 2 1127 1265 164 18 22 chr6 71089407 71089632 -78427405 - URR1B DNA MER1_type -1 224 1 2 1127 1153 192 14 18 chr6 71090225 71090442 -78426595 - B3 SINE B2 0 216 1 2 1127 227 196 0 61 chr6 71090524 71090573 -78426464 + ORR1D1 LTR MaLR 136 181 -193 2 1127 1048 149 77 29 chr6 71090591 71090798 -78426239 + ORR1D1 LTR MaLR 158 374 0 2 1127 251 252 51 59 chr6 71090798 71090876 -78426161 + MER5A1 DNA MER1_type 83 159 -7 2 1127 1025 246 26 26 chr6 71091812 71092083 -78424954 + L1_Rod LINE L1 5409 5679 -168 2 1127 477 220 252 81 chr6 71092094 71092292 -78424745 + Lx8 LINE L1 7222 7453 -20 2 1127 235 222 95 0 chr6 71092682 71092745 -78424292 - ID4_ SINE ID -13 70 2 2 1127 762 201 89 37 chr6 71092872 71093063 -78423974 + RMER30 DNA MER1_type 1 201 -1 2 1127 189 0 0 0 chr6 71093693 71093714 -78423323 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1127 507 144 20 172 chr6 71094623 71094774 -78422263 - B1_Mur2 SINE Alu -1 148 21 2 1127 244 339 34 25 chr6 71094993 71095111 -78421926 - B1_Mur3 SINE Alu -21 128 10 2 1127 659 287 66 0 chr6 71095024 71095191 -78421846 - ID_B1 SINE B4 -46 178 1 2 1127 453 36 0 0 chr6 71096037 71096092 -78420945 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 1127 817 214 117 20 chr6 71096126 71096322 -78420715 + B3 SINE B2 2 216 0 2 1127 1776 107 8 0 chr6 71096345 71096607 -78420430 - Lx2 LINE L1 0 6997 6734 2 1127 7620 76 4 0 chr6 71096610 71097636 -78419401 - Lx2 LINE L1 -427 6570 5538 2 1127 1621 114 4 4 chr6 71097626 71097881 -78419156 + L1_Mur2 LINE L1 5051 5305 -572 2 1127 1316 97 5 26 chr6 71098076 71098267 -78418770 + B2_Mm2 SINE B2 2 188 -7 2 1127 735 250 83 20 chr6 71099041 71099245 -78417792 - ID_B1 SINE B4 -3 221 5 2 1127 404 236 142 54 chr6 71099404 71099552 -78417485 - RSINE1 SINE B4 -2 163 3 2 1127 333 0 0 0 chr6 71100436 71100473 -78416564 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1127 2671 163 10 8 chr6 71100533 71101015 -78416022 + L1_Mur3 LINE L1 3696 4178 -1702 2 1127 1847 260 87 8 chr6 71101085 71101578 -78415459 + Lx6 LINE L1 6794 7325 -135 2 1127 282 190 103 0 chr6 71101827 71101885 -78415152 + MTC LTR MaLR 1 64 -355 2 1127 1083 281 63 57 chr6 71101877 71102353 -78414684 - RLTR12B LTR ERVK -9 519 41 2 1127 1316 188 76 21 chr6 71102378 71102683 -78414354 + MTC LTR MaLR 54 421 0 2 1127 3255 53 2 2 chr6 71103159 71103555 -78413482 + MTA_Mm LTR MaLR 1 396 0 2 1127 1955 144 87 82 chr6 71103850 71104171 -78412866 + ORR1B1 LTR MaLR 1 355 -39 2 1127 1826 205 35 6 chr6 71104171 71104515 -78412522 + Lx5 LINE L1 6694 7047 -3 2 1127 1955 144 87 82 chr6 71104515 71104585 -78412452 + ORR1B1 LTR MaLR 356 394 0 2 1127 474 88 0 0 chr6 71104661 71104729 -78412308 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1127 418 256 68 30 chr6 71105218 71105351 -78411686 - RMER15 LTR ERVL -16 559 422 2 1127 644 276 59 20 chr6 71105652 71105855 -78411182 - ID_B1 SINE B4 -13 211 1 2 1127 1181 171 92 5 chr6 71106291 71106497 -78410540 - URR1B DNA MER1_type 0 225 2 2 1127 1071 261 43 92 chr6 71106935 71107327 -78409710 - MTE2b LTR MaLR -1 378 6 2 1127 1375 270 20 52 chr6 71107593 71108051 -78408986 - RLTR17 LTR ERVK -109 583 141 2 1127 2775 69 42 39 chr6 71108174 71108580 -78408457 + RLTR10A LTR ERVK 1 407 -4 2 1127 399 243 187 22 chr6 71108796 71108979 -78408058 - MTE-int LTR MaLR 0 1580 1413 2 1127 369 62 0 0 chr6 71110749 71110797 -78406240 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1127 515 280 60 44 chr6 71111149 71111332 -78405705 - B3A SINE B2 -1 215 30 2 1127 313 344 24 99 chr6 71111392 71111445 -78405592 - MER58C DNA MER1_type 0 215 139 2 1127 339 179 112 25 chr6 71111445 71111525 -78405512 - ID_B1 SINE B4 -25 199 113 2 1127 313 344 24 99 chr6 71111525 71111605 -78405432 - MER58C DNA MER1_type 0 138 19 2 1127 393 233 12 0 chr6 71111934 71112020 -78405017 + B3A SINE B2 8 94 -104 2 1127 423 0 0 0 chr6 71112034 71112081 -78404956 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1127 925 111 85 0 chr6 71112165 71112318 -78404719 - ORR1B2 LTR MaLR -8 359 194 2 1127 231 316 104 13 chr6 71112583 71112737 -78404300 - MER58B DNA MER1_type -79 262 95 2 1127 432 286 0 9 chr6 71112722 71112828 -78404209 - ID_B1 SINE B4 -3 221 117 2 1127 339 83 0 0 chr6 71112897 71112945 -78404092 - RMER10B LTR ERVL 0 398 351 2 1127 244 158 140 0 chr6 71112935 71112992 -78404045 - RMER4B LTR ERVK -520 65 1 2 1127 246 372 10 41 chr6 71113018 71113116 -78403921 + RSINE1 SINE B4 71 165 0 2 1127 640 174 18 0 chr6 71113153 71113262 -78403775 + B1_Mur2 SINE Alu 26 136 -13 2 1127 387 60 0 0 chr6 71113262 71113312 -78403725 + (CCA)n Simple_repeat Simple_repeat 1 50 0 2 1127 1729 154 184 3 chr6 71113329 71113661 -78403376 - RMER1B Other Other -14 1052 661 2 1127 1034 134 36 12 chr6 71113662 71113877 -78403160 - ORR1A4 LTR MaLR -5 341 113 2 1127 1768 222 50 52 chr6 71113878 71114325 -78402712 + RLTR20A LTR ERVK 1 436 -105 2 1127 234 0 0 0 chr6 71114325 71114351 -78402686 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1127 1768 222 50 52 chr6 71114351 71114445 -78402592 + RLTR20A LTR ERVK 437 541 0 2 1127 609 101 123 15 chr6 71114457 71114587 -78402450 - ORR1B1 LTR MaLR -218 176 1 2 1127 613 236 142 10 chr6 71114587 71114884 -78402153 - RMER1B Other Other -398 668 402 2 1127 1023 73 0 0 chr6 71115351 71115488 -78401549 + (TTTC)n Simple_repeat Simple_repeat 4 140 0 2 1127 1182 55 0 7 chr6 71115513 71115661 -78401376 - B1_Mus1 SINE Alu -1 147 1 2 1127 4429 10 0 0 chr6 71115974 71116456 -78400581 + LTRIS_Mm LTR ERV1 1 482 0 2 1127 445 246 82 7 chr6 71116656 71116791 -78400246 + ID_B1 SINE B4 67 211 -13 2 1127 640 80 10 10 chr6 71117360 71117461 -78399576 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1127 536 264 23 0 chr6 71117469 71117598 -78399439 - RSINE1 SINE B4 -33 132 1 2 1127 878 263 29 29 chr6 71117752 71118026 -78399011 + B4A SINE B4 1 274 -18 2 1127 252 122 0 0 chr6 71118030 71118071 -78398966 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1127 323 159 52 31 chr6 71118398 71118495 -78398542 + RLTR43A LTR ERVK 212 310 -54 2 1127 328 153 115 0 chr6 71118563 71118720 -78398317 + (ACTG)n Simple_repeat Simple_repeat 1 175 0 2 1127 357 150 112 0 chr6 71118741 71118901 -78398136 + (ACTG)n Simple_repeat Simple_repeat 2 179 0 2 1127 376 138 104 18 chr6 71118924 71119087 -78397950 + (ACTG)n Simple_repeat Simple_repeat 2 178 0 2 1127 226 164 117 19 chr6 71119123 71119285 -78397752 + (ACTG)n Simple_repeat Simple_repeat 2 179 0 2 1127 351 156 110 18 chr6 71119339 71119673 -78397364 + (ACTG)n Simple_repeat Simple_repeat 1 364 0 2 1127 351 144 104 18 chr6 71119880 71120043 -78396994 + (ACTG)n Simple_repeat Simple_repeat 2 178 0 2 1127 261 160 122 0 chr6 71120061 71120217 -78396820 + (ACTG)n Simple_repeat Simple_repeat 2 176 0 2 1127 239 178 118 0 chr6 71120267 71120419 -78396618 + (ACTG)n Simple_repeat Simple_repeat 2 171 0 2 1127 360 143 104 18 chr6 71120441 71120605 -78396432 + (ACTG)n Simple_repeat Simple_repeat 2 179 0 2 1127 207 161 118 20 chr6 71120687 71120839 -78396198 + (ACTG)n Simple_repeat Simple_repeat 2 168 0 2 1127 1113 100 58 23 chr6 71121054 71121228 -78395809 - B2_Mm2 SINE B2 -15 180 1 2 1127 256 227 0 43 chr6 71121420 71121489 -78395548 + PB1D10 SINE Alu 8 73 -44 2 1127 228 308 32 32 chr6 71121489 71121514 -78395523 + ID_B1 SINE B4 89 182 -42 2 1127 189 107 0 0 chr6 71122966 71122994 -78394043 + (CACG)n Simple_repeat Simple_repeat 4 31 0 2 1127 263 302 122 0 chr6 71123532 71123671 -78393366 + L1M5 LINE L1 4067 4222 -1924 2 1127 321 284 23 4 chr6 71123702 71123961 -78393076 + (CTA)n Simple_repeat Simple_repeat 1 264 0 2 1127 466 355 86 0 chr6 71123989 71124279 -78392758 + L1MEc LINE L1 100 414 -5986 2 1127 1315 65 5 5 chr6 71124420 71124607 -78392430 + MT2C_Mm LTR ERVL 289 475 0 2 1127 330 275 252 20 chr6 71124640 71124941 -78392096 + L1MEc LINE L1 634 1004 -5396 2 1127 445 288 13 92 chr6 71125055 71125208 -78391829 + B3A SINE B2 50 190 -8 2 1127 234 0 0 0 chr6 71125249 71125275 -78391762 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2 1127 578 321 31 0 chr6 71125474 71125633 -78391404 - RSINE1 SINE B4 0 165 2 2 1127 341 312 65 21 chr6 71125669 71125999 -78391038 + L1MEc LINE L1 1395 1823 -4592 2 1127 754 244 25 6 chr6 71126059 71126220 -78390817 - B3A SINE B2 -24 174 11 2 1127 351 0 0 0 chr6 71126220 71126259 -78390778 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1127 497 119 0 10 chr6 71126259 71126361 -78390676 + (GA)n Simple_repeat Simple_repeat 1 101 0 2 1127 338 197 52 13 chr6 71126475 71126552 -78390485 - L1MA4 LINE L1 -368 5932 5853 2 1127 268 321 55 28 chr6 71126586 71126695 -78390342 - ID_B1 SINE B4 -1 223 112 2 1127 483 224 9 18 chr6 71126845 71126954 -78390083 - B3A SINE B2 -90 108 1 2 1127 369 266 108 25 chr6 71126955 71127113 -78389924 - L1MA4 LINE L1 -724 5579 5409 2 1127 2458 194 36 31 chr6 71127441 71128016 -78389021 - RLTR20A2 LTR ERVK 0 578 1 2 1127 353 327 106 18 chr6 71128044 71128271 -78388766 - L1MA4 LINE L1 -1104 5039 4793 2 1127 328 122 0 0 chr6 71128274 71128323 -78388714 - L1MA4 LINE L1 -1677 4466 4418 2 1127 1185 92 38 0 chr6 71128359 71128543 -78388494 - RLTR9D LTR ERVK -212 191 1 3 1127 273 204 0 0 chr6 71128543 71128592 -78388445 - PB1D10 SINE Alu -15 102 54 3 1127 838 172 167 0 chr6 71128662 71128842 -78388195 - B3 SINE B2 -5 211 2 3 1127 898 264 68 18 chr6 71128898 71129176 -78387861 - B4A SINE B4 0 292 1 3 1127 261 196 0 0 chr6 71129541 71129597 -78387440 + (CAAA)n Simple_repeat Simple_repeat 4 59 0 3 1127 724 305 25 114 chr6 71130014 71130565 -78386472 - L1MA4 LINE L1 -2062 4078 3577 2 1127 803 265 122 31 chr6 71130574 71131050 -78385987 + L1MEc LINE L1 1784 2302 -4098 2 1127 573 258 25 6 chr6 71131083 71131243 -78385794 + RSINE1 SINE B4 2 164 -1 3 1127 23 78 0 0 chr6 71131243 71131294 -78385743 + AT_rich Low_complexity Low_complexity 1 51 0 3 1127 526 283 33 44 chr6 71131326 71131759 -78385278 + L1MEc LINE L1 5299 5730 -683 2 1127 211 233 33 0 chr6 71133319 71133379 -78383658 - RSINE1 SINE B4 -14 151 90 3 1127 329 242 37 106 chr6 71133447 71133597 -78383440 - B4A SINE B4 -118 174 29 3 1127 315 284 21 0 chr6 71133685 71133780 -78383257 - MER65D LTR ERV1 -172 301 205 3 1127 346 320 39 23 chr6 71133818 71133946 -78383091 + RSINE1 SINE B4 3 132 -33 3 1127 638 274 49 40 chr6 71134255 71134479 -78382558 - RMER15 LTR ERVL -14 561 336 3 1127 1082 107 0 6 chr6 71134738 71134898 -78382139 + MTC LTR MaLR 263 421 0 3 1127 589 255 62 0 chr6 71135738 71135883 -78381154 - ID_B1 SINE B4 -69 155 2 3 1127 261 0 0 0 chr6 71135973 71136002 -78381035 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1127 1998 161 43 45 chr6 71136429 71136541 -78380496 + MTC LTR MaLR 3 106 -315 3 1127 886 145 306 6 chr6 71136541 71136714 -78380323 - URR1B DNA MER1_type 0 225 1 3 1127 1998 161 43 45 chr6 71136714 71136997 -78380040 + MTC LTR MaLR 107 397 -24 3 1127 1973 125 13 13 chr6 71136997 71137306 -78379731 + Lx2 LINE L1 6671 6979 -18 3 1127 228 67 0 0 chr6 71137306 71137336 -78379701 + (TAA)n Simple_repeat Simple_repeat 3 32 0 3 1127 701 294 17 7 chr6 71137439 71137646 -78379391 - B3A SINE B2 -3 213 1 3 1127 257 239 67 53 chr6 71138511 71138586 -78378451 + ID4_ SINE ID 1 76 -7 3 1127 310 264 0 14 chr6 71138600 71138673 -78378364 + ID4_ SINE ID 8 79 -4 3 1127 834 125 14 22 chr6 71138733 71138862 -78378175 + B1_Mur3 SINE Alu 9 139 -10 3 1127 194 0 39 0 chr6 71138862 71138888 -78378149 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1127 450 0 0 0 chr6 71140038 71140088 -78376949 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1127 564 209 22 127 chr6 71140106 71140287 -78376750 + RSINE1 SINE B4 4 165 0 3 1127 23 0 0 0 chr6 71140289 71140312 -78376725 + AT_rich Low_complexity Low_complexity 1 23 0 3 1127 447 68 0 0 chr6 71140312 71140371 -78376666 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 3 1127 970 231 10 0 chr6 71140380 71140579 -78376458 + B3 SINE B2 11 211 -5 3 1127 604 240 47 128 chr6 71140651 71140947 -78376090 - RMER12 LTR ERVK -93 1229 958 3 1127 1441 232 115 75 chr6 71141051 71141880 -78375157 - RMER12 LTR ERVK -1068 780 1 3 1127 2005 201 70 7 chr6 71142040 71142051 -78374986 - RCHARR1 DNA MER1_type -69 905 895 3 1127 188 34 0 33 chr6 71142051 71142081 -78374956 + (CACAC)n Simple_repeat Simple_repeat 1 29 0 3 1127 2005 201 70 7 chr6 71142081 71142611 -78374426 - RCHARR1 DNA MER1_type -80 894 331 3 1127 3527 51 32 0 chr6 71142613 71143044 -78373993 + L1_Mus1 LINE L1 6122 6566 -1 3 1127 249 268 42 14 chr6 71143087 71143159 -78373878 - RSINE1 SINE B4 -88 77 4 3 1127 843 211 30 55 chr6 71144261 71144462 -78372575 - B3A SINE B2 -1 197 2 3 1127 649 212 7 0 chr6 71144465 71144602 -78372435 - B1F SINE Alu 0 149 12 3 1127 303 174 14 42 chr6 71144544 71144616 -78372421 - B4A SINE B4 -140 152 83 3 1127 333 0 0 0 chr6 71146472 71146509 -78370528 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1127 333 0 0 0 chr6 71149361 71149398 -78367639 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1127 347 344 0 0 chr6 71149399 71149524 -78367513 + (TA)n Simple_repeat Simple_repeat 2 126 0 3 1127 1171 219 9 0 chr6 71151243 71151458 -78365579 + ID_B1 SINE B4 2 218 -6 3 1127 278 224 105 0 chr6 71152523 71152612 -78364425 - PB1D10 SINE Alu -17 103 2 3 1127 693 66 0 0 chr6 71152668 71152759 -78364278 + (GAAA)n Simple_repeat Simple_repeat 4 94 0 3 1127 303 49 0 0 chr6 71153223 71153264 -78363773 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1127 258 309 0 0 chr6 71153628 71153696 -78363341 + MER91B DNA Tip100 90 157 -33 3 1127 207 0 0 0 chr6 71154824 71154847 -78362190 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1127 378 0 0 0 chr6 71155067 71155109 -78361928 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1127 225 190 172 0 chr6 71155109 71155167 -78361870 - ID4_ SINE ID -14 69 2 3 1127 21 0 0 0 chr6 71155195 71155216 -78361821 + AT_rich Low_complexity Low_complexity 1 21 0 3 1127 413 315 85 0 chr6 71155699 71155829 -78361208 + MLT1C LTR MaLR 28 168 -299 3 1127 980 39 8 0 chr6 71155854 71155984 -78361053 - B1_Mus1 SINE Alu -1 147 17 3 1127 1233 77 71 12 chr6 71155997 71156167 -78360870 - B2_Mm2 SINE B2 -14 181 2 3 1127 334 256 98 16 chr6 71156234 71156357 -78360680 + MLT1C LTR MaLR 304 436 -31 3 1127 2029 140 39 39 chr6 71156366 71156752 -78360285 - ORR1B1 LTR MaLR -8 386 1 3 1127 3879 154 173 3 chr6 71156752 71157623 -78359414 - ORR1B1-int LTR MaLR 0 1509 491 3 1127 351 0 0 0 chr6 71158013 71158052 -78358985 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 1127 379 124 12 35 chr6 71158217 71158320 -78358717 - ORR1B1-int LTR MaLR -1462 501 410 3 1127 712 157 0 0 chr6 71158315 71158436 -78358601 - ORR1B1-int LTR MaLR -1299 210 90 3 1127 433 340 0 7 chr6 71158670 71158815 -78358222 + ID_B1 SINE B4 76 219 -5 3 1127 870 206 17 0 chr6 71159257 71159432 -78357605 - B3A SINE B2 -11 187 10 3 1127 357 24 0 0 chr6 71160085 71160127 -78356910 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 3 1127 312 246 0 0 chr6 71160129 71160186 -78356851 + ID4 SINE ID 2 58 -25 3 1127 264 254 281 66 chr6 71160239 71160467 -78356570 + B4 SINE B4 2 278 -14 3 1127 751 226 74 45 chr6 71160523 71160699 -78356338 + B3A SINE B2 1 181 -17 3 1127 276 259 103 23 chr6 71160897 71160984 -78356053 - ID_B1 SINE B4 -25 199 106 3 1127 705 125 7 53 chr6 71161457 71161609 -78355428 - L1Md_F3 LINE L1 0 6584 6440 3 1127 1467 219 65 21 chr6 71161717 71162103 -78354934 + MTD LTR MaLR 1 403 -16 3 1127 931 155 0 0 chr6 71162300 71162448 -78354589 + B1_Mus1 SINE Alu 1 148 0 3 1127 235 49 81 16 chr6 71162455 71162517 -78354520 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 3 1127 218 217 0 0 chr6 71162872 71162918 -78354119 + T-rich Low_complexity Low_complexity 1 46 0 3 1127 1195 39 7 0 chr6 71162969 71163123 -78353914 + B2_Mm2 SINE B2 3 157 -38 3 1127 693 137 68 0 chr6 71163123 71163240 -78353797 - RMER1B Other Other -225 841 717 3 1127 1188 164 26 17 chr6 71163236 71163466 -78353571 + RMER1A Other Other 770 1001 -29 3 1127 293 176 171 29 chr6 71163525 71163595 -78353442 - RMER1B Other Other -986 80 1 3 1127 566 257 28 14 chr6 71163719 71163861 -78353176 - RSINE1 SINE B4 -21 144 1 3 1127 777 223 187 93 chr6 71166974 71167306 -78349731 + MTE2a LTR MaLR 3 365 -14 3 1127 7058 36 30 1 chr6 71167612 71168443 -78348594 + RLTR13A LTR ERVK 1 855 0 3 1127 488 170 0 9 chr6 71168715 71168822 -78348215 + (TA)n Simple_repeat Simple_repeat 1 106 0 3 1127 240 64 42 21 chr6 71169713 71169761 -78347276 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1127 267 300 140 0 chr6 71170290 71170390 -78346647 + PB1D10 SINE Alu 2 115 -2 3 1127 278 302 86 0 chr6 71170413 71170552 -78346485 - MER5B DNA MER1_type -14 164 14 3 1127 180 0 0 0 chr6 71170856 71170876 -78346161 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 3 1127 352 247 0 24 chr6 71171085 71171168 -78345869 + ID4 SINE ID 3 83 0 3 140 2974 281 62 23 chr6 71171493 71172478 -78344559 - Lx9 LINE L1 -230 7414 6392 3 1128 648 178 83 23 chr6 71172555 71172687 -78344350 - B1_Mur2 SINE Alu -8 141 2 3 1128 415 96 24 0 chr6 71172992 71173075 -78343962 + (CAAAA)n Simple_repeat Simple_repeat 3 87 0 3 1128 603 306 52 87 chr6 71173339 71173743 -78343294 + MLT1B LTR MaLR 1 390 0 3 1128 774 30 0 0 chr6 71174019 71174120 -78342917 + B1_Mus2 SINE Alu 47 147 0 3 1128 505 125 10 20 chr6 71174120 71174218 -78342819 + A-rich Low_complexity Low_complexity 2 98 0 3 1128 795 300 81 76 chr6 71174518 71174926 -78342111 + MER76 LTR ERVL 282 691 0 3 1128 284 242 0 20 chr6 71176332 71176433 -78340604 + GA-rich Low_complexity Low_complexity 1 99 0 3 1128 248 293 80 10 chr6 71177523 71177623 -78339414 - MIRm SINE MIR -121 155 49 3 1128 309 224 215 0 chr6 71178022 71178129 -78338908 + B1F SINE Alu 5 134 -15 3 1128 680 44 22 0 chr6 71178132 71178223 -78338814 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 3 1128 254 261 27 20 chr6 71178231 71178325 -78338712 + GA-rich Low_complexity Low_complexity 1 94 0 3 1128 241 314 45 73 chr6 71178365 71178475 -78338562 + PB1 SINE Alu 19 125 -2 3 1128 361 247 25 0 chr6 71178484 71178565 -78338472 + ID4_ SINE ID 1 83 0 3 1128 775 277 171 16 chr6 71178638 71178954 -78338083 - MER47A DNA MER2_type 0 366 2 3 1128 281 100 363 0 chr6 71179543 71179631 -78337406 + RMER5 LTR ERV1 415 534 0 3 1128 2010 136 81 136 chr6 71179736 71180281 -78336756 + RLTR24 LTR ERV1 1 515 -14 3 1128 324 0 0 0 chr6 71181045 71181081 -78335956 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1128 27 0 0 0 chr6 71181434 71181461 -78335576 + AT_rich Low_complexity Low_complexity 1 27 0 3 1128 229 229 0 0 chr6 71182164 71182212 -78334825 + (TAA)n Simple_repeat Simple_repeat 1 48 0 3 1128 213 121 0 0 chr6 71182461 71182494 -78334543 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1128 21 0 0 0 chr6 71182572 71182593 -78334444 + AT_rich Low_complexity Low_complexity 1 21 0 3 1128 345 141 0 0 chr6 71183632 71183703 -78333334 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1128 22 35 0 0 chr6 71183735 71183764 -78333273 + AT_rich Low_complexity Low_complexity 1 29 0 4 1128 1968 182 122 53 chr6 71184372 71184847 -78332190 + RMER5 LTR ERV1 1 508 -26 4 1128 1179 61 7 0 chr6 71185819 71185966 -78331071 + B1_Mus1 SINE Alu 1 148 0 4 1128 324 0 0 0 chr6 71185966 71186002 -78331035 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1128 246 316 159 75 chr6 71186605 71187071 -78329966 + LTR33 LTR ERVL 11 515 0 4 1128 383 0 21 0 chr6 71187927 71187974 -78329063 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1128 224 294 29 0 chr6 71188007 71188075 -78328962 + B1_Mus1 SINE Alu 9 78 -70 4 1128 198 0 0 0 chr6 71188802 71188824 -78328213 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 4 1128 630 274 54 0 chr6 71189760 71189946 -78327091 + B3A SINE B2 1 196 -2 4 1128 471 113 0 0 chr6 71190032 71190103 -78326934 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1128 263 218 26 77 chr6 71190123 71190210 -78326827 + B1F2 SINE Alu 11 93 -27 4 1128 230 246 82 0 chr6 71190585 71190646 -78326391 + ID4_ SINE ID 2 67 -16 4 1128 670 253 59 13 chr6 71190685 71190837 -78326200 + RSINE1 SINE B4 1 159 -6 4 1128 284 269 131 61 chr6 71190976 71191190 -78325847 - ORR1E LTR MaLR -106 253 25 4 1128 562 287 7 0 chr6 71191895 71192031 -78325006 + RSINE1 SINE B4 4 140 -25 4 1128 2936 175 270 60 chr6 71192437 71193203 -78323834 + RMER1B Other Other 11 918 -148 4 1128 636 14 0 0 chr6 71193203 71193276 -78323761 + (TTTTG)n Simple_repeat Simple_repeat 5 77 0 4 1128 2936 175 270 60 chr6 71193276 71193376 -78323661 + RMER1B Other Other 919 1058 -8 4 1128 907 128 94 35 chr6 71193382 71193552 -78323485 - B2_Mm2 SINE B2 -14 181 2 4 1128 23 0 0 0 chr6 71193556 71193579 -78323458 + AT_rich Low_complexity Low_complexity 1 23 0 4 1128 268 235 0 0 chr6 71193751 71193802 -78323235 - B3A SINE B2 -142 56 6 4 1128 382 181 72 0 chr6 71193807 71193890 -78323147 - B1F SINE Alu 0 149 61 4 1128 29 0 0 0 chr6 71193908 71193937 -78323100 + AT_rich Low_complexity Low_complexity 1 29 0 4 1128 186 43 0 0 chr6 71194052 71194075 -78322962 + (CCCTG)n Simple_repeat Simple_repeat 5 27 0 4 1128 806 246 111 108 chr6 71194441 71194667 -78322370 + MTE2a LTR MaLR 1 194 -185 4 1128 450 0 0 0 chr6 71194667 71194717 -78322320 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1128 806 246 111 108 chr6 71194717 71194868 -78322169 + MTE2a LTR MaLR 195 379 0 4 1128 778 235 0 0 chr6 71195072 71195225 -78321812 + B3A SINE B2 2 154 -44 4 1128 189 74 0 0 chr6 71195270 71195297 -78321740 + (CAGAGA)n Simple_repeat Simple_repeat 3 29 0 4 1128 235 257 48 29 chr6 71195444 71195548 -78321489 - MER5A1 DNA MER1_type 0 166 61 4 1128 210 37 0 0 chr6 71195662 71195689 -78321348 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 1128 402 74 0 0 chr6 71195699 71195753 -78321284 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 4 1128 268 230 157 0 chr6 71195805 71195918 -78321119 + MIRc SINE MIR 31 156 -106 4 1128 315 220 115 50 chr6 71195968 71196107 -78320930 - Lx7 LINE L1 -24 7672 7525 4 1128 672 260 7 0 chr6 71196182 71196336 -78320701 + B3 SINE B2 1 155 -61 4 1128 486 0 0 0 chr6 71196338 71196392 -78320645 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1128 584 229 8 0 chr6 71196428 71196550 -78320487 + B1F SINE Alu 27 149 0 4 1128 385 353 0 40 chr6 71196745 71196778 -78320259 + ID SINE ID 55 83 -141 4 1128 1743 210 22 5 chr6 71196778 71197146 -78319891 + ORR1D1 LTR MaLR 1 374 0 4 1128 385 353 0 40 chr6 71197146 71197289 -78319748 + ID_B1 SINE B4 84 224 0 4 1128 681 243 21 0 chr6 71197360 71197500 -78319537 + B3A SINE B2 2 144 -54 4 1128 297 197 0 0 chr6 71197523 71197589 -78319448 + CT-rich Low_complexity Low_complexity 1 66 0 4 1128 425 224 60 20 chr6 71197612 71197712 -78319325 + B3A SINE B2 7 110 -88 4 1128 636 99 38 17 chr6 71197736 71198023 -78319014 + (TAGA)n Simple_repeat Simple_repeat 1 292 0 4 1128 829 186 117 41 chr6 71198529 71198725 -78318312 - B3 SINE B2 -2 214 4 4 1128 314 254 0 0 chr6 71199121 71199176 -78317861 + ID SINE ID 1 55 -169 4 1128 987 231 86 26 chr6 71199178 71199445 -78317592 - ORR1D2 LTR MaLR -84 286 4 4 1128 383 330 18 0 chr6 71200082 71200191 -78316846 - PB1D10 SINE Alu -6 111 1 4 1128 1983 181 99 42 chr6 71200245 71200742 -78316295 + RLTR11A2 LTR ERVK 1 525 -2 4 1128 966 270 58 4 chr6 71200749 71201006 -78316031 - B4A SINE B4 -20 272 2 4 1128 590 246 24 107 chr6 71201742 71201947 -78315090 + B3A SINE B2 1 188 -7 4 1128 882 204 35 92 chr6 71202710 71202892 -78314145 + B3 SINE B2 3 181 -35 4 1128 1145 81 0 0 chr6 71202892 71203040 -78313997 + B1_Mus1 SINE Alu 1 148 0 4 1128 882 204 35 92 chr6 71203040 71203084 -78313953 + B3 SINE B2 182 216 0 4 1128 388 211 83 0 chr6 71203188 71203291 -78313746 + PB1D9 SINE Alu 2 127 0 4 1128 207 0 0 0 chr6 71203291 71203314 -78313723 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1128 474 269 6 92 chr6 71203636 71203800 -78313237 + RSINE1 SINE B4 16 165 0 4 1128 753 177 0 0 chr6 71203802 71203949 -78313088 + (CA)n Simple_repeat Simple_repeat 1 147 0 4 1128 464 299 85 0 chr6 71203983 71204147 -78312890 + B4A SINE B4 55 232 -60 4 1128 409 333 12 56 chr6 71204155 71204317 -78312720 + RSINE1 SINE B4 11 165 0 4 1128 387 0 0 0 chr6 71204330 71204373 -78312664 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1128 346 224 18 27 chr6 71204574 71204684 -78312353 + PB1D10 SINE Alu 9 117 0 4 1128 474 269 30 0 chr6 71204687 71204821 -78312216 + ID_B1 SINE B4 80 217 -7 4 1128 272 265 157 0 chr6 71205639 71205722 -78311315 + MLT1D LTR MaLR 23 118 -387 4 1128 937 232 19 10 chr6 71205725 71205934 -78311103 + B3 SINE B2 3 213 -3 4 1128 306 0 0 0 chr6 71206095 71206129 -78310908 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1128 279 133 0 0 chr6 71206192 71206237 -78310800 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1128 185 286 0 20 chr6 71206729 71206779 -78310258 + MIR SINE MIR 89 137 -71 4 1128 225 0 0 0 chr6 71206993 71207018 -78310019 + (TAA)n Simple_repeat Simple_repeat 3 27 0 4 1128 745 274 11 6 chr6 71207074 71207254 -78309783 + B3A SINE B2 2 182 -16 4 1128 256 260 0 0 chr6 71207260 71207310 -78309727 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1128 212 261 217 0 chr6 71207326 71207395 -78309642 + PB1D10 SINE Alu 33 116 -1 4 1128 618 287 0 0 chr6 71207857 71208000 -78309037 + ID_B1 SINE B4 81 223 -1 4 1128 218 306 0 0 chr6 71208064 71208126 -78308911 + (ATGGTG)n Simple_repeat Simple_repeat 5 66 0 4 1128 1178 61 0 13 chr6 71208180 71208329 -78308708 + B1_Mus1 SINE Alu 1 147 -1 4 1128 246 105 0 0 chr6 71208333 71208371 -78308666 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1128 1081 73 13 0 chr6 71208417 71208568 -78308469 + B2_Mm2 SINE B2 2 154 -41 4 1128 207 0 0 0 chr6 71208569 71208592 -78308445 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1128 473 270 207 56 chr6 71208611 71208795 -78308242 + B4A SINE B4 1 220 -72 4 1128 786 179 247 6 chr6 71208795 71208969 -78308068 + B3 SINE B2 1 216 0 4 1128 473 270 207 56 chr6 71208969 71209035 -78308002 + B4A SINE B4 221 289 -3 4 1128 435 311 26 33 chr6 71209139 71209292 -78307745 + B4A SINE B4 27 178 -114 4 1128 399 165 192 10 chr6 71209310 71209414 -78307623 + B1_Mm SINE Alu 23 145 -2 4 1128 304 284 32 42 chr6 71209313 71209514 -78307523 + B4 SINE B4 78 277 -15 4 1128 369 225 17 35 chr6 71209702 71209817 -78307220 + PB1D9 SINE Alu 1 113 -7 4 1128 1180 75 0 0 chr6 71210714 71210861 -78306176 + B1_Mus2 SINE Alu 1 147 0 4 1128 679 256 6 12 chr6 71210885 71211047 -78305990 + RSINE1 SINE B4 1 161 -4 4 1128 237 245 0 0 chr6 71211314 71211363 -78305674 + RSINE1 SINE B4 95 143 -22 4 1128 650 220 0 28 chr6 71211734 71211879 -78305158 + RSINE1 SINE B4 3 143 -22 4 1128 225 94 0 0 chr6 71211916 71211948 -78305089 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1128 392 265 142 71 chr6 71213298 71213594 -78303443 - RMER10A LTR ERVL -5 437 121 4 1128 527 72 12 0 chr6 71213985 71214068 -78302969 + ORR1A3 LTR MaLR 3 86 -240 4 1128 1895 179 30 16 chr6 71214408 71214777 -78302260 - ORR1D1 LTR MaLR 0 374 1 4 1128 330 195 36 83 chr6 71214777 71214853 -78302184 + PB1D10 SINE Alu 36 108 -9 4 1128 399 89 0 0 chr6 71214871 71214927 -78302110 + (GGA)n Simple_repeat Simple_repeat 2 57 0 4 1128 1082 93 0 0 chr6 71214943 71215083 -78301954 + B1_Mus1 SINE Alu 1 140 -8 4 1128 540 0 0 0 chr6 71215083 71215143 -78301894 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 4 1128 234 0 0 0 chr6 71215145 71215171 -78301866 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 4 1128 1758 142 82 3 chr6 71215188 71215493 -78301544 + ORR1A4 LTR MaLR 1 329 0 4 1128 308 235 66 78 chr6 71216079 71216245 -78300792 + MLT1A1 LTR MaLR 245 408 0 4 1128 992 281 76 83 chr6 71216245 71216679 -78300358 + MLT1D LTR MaLR 75 505 0 4 1128 317 138 0 33 chr6 71216727 71216787 -78300250 + B1_Mur1 SINE Alu 90 147 -2 4 1128 264 328 77 93 chr6 71216796 71216931 -78300106 - MER20B DNA MER1_type -72 711 580 4 1128 7361 52 10 0 chr6 71216931 71217815 -78299222 + RLTR13B1 LTR ERVK 1 893 0 4 1128 264 328 77 93 chr6 71217815 71218096 -78298941 - MER20B DNA MER1_type -204 579 302 4 1128 489 294 56 51 chr6 71218135 71218350 -78298687 + B3 SINE B2 1 216 0 5 1128 386 363 70 22 chr6 71219239 71219512 -78297525 + MER58B DNA MER1_type 56 341 0 5 1128 599 216 102 21 chr6 71219695 71219880 -78297157 + B3A SINE B2 2 200 -16 5 1128 1103 56 14 27 chr6 71219880 71220028 -78297009 + B1_Mm SINE Alu 2 147 0 5 1128 248 0 0 30 chr6 71220034 71220067 -78296970 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1128 36 0 0 0 chr6 71220131 71220167 -78296870 + AT_rich Low_complexity Low_complexity 1 36 0 5 1128 365 245 21 0 chr6 71220452 71220546 -78296491 + PB1D10 SINE Alu 21 116 -1 5 1128 216 304 0 0 chr6 71221021 71221077 -78295960 + RSINE1 SINE B4 37 92 -73 5 1128 198 71 0 0 chr6 71221700 71221728 -78295309 + (CGG)n Simple_repeat Simple_repeat 3 30 0 5 1128 25 0 0 0 chr6 71221841 71221866 -78295171 + GC_rich Low_complexity Low_complexity 1 25 0 5 1128 26 0 0 0 chr6 71221905 71221931 -78295106 + GC_rich Low_complexity Low_complexity 1 26 0 5 1128 373 168 210 40 chr6 71222710 71222834 -78294203 + B1_Mur1 SINE Alu 5 149 0 5 1128 256 262 237 6 chr6 71222921 71223090 -78293947 - MER67B LTR ERV1 -453 208 1 5 1128 403 248 68 148 chr6 71223935 71224172 -78292865 + MER20 DNA MER1_type 1 218 -1 5 1128 239 276 17 0 chr6 71224401 71224459 -78292578 - B1_Mus1 SINE Alu -89 59 1 5 1128 257 231 0 19 chr6 71224407 71224460 -78292577 - ID_B1 SINE B4 -92 132 81 5 1128 374 250 0 94 chr6 71224483 71224506 -78292531 + MT2B LTR ERVL 145 157 -444 5 1128 523 196 22 0 chr6 71224506 71224598 -78292439 + B1_Mur2 SINE Alu 1 94 -55 5 1128 273 244 230 59 chr6 71224605 71224630 -78292407 + ID_B1 SINE B4 66 223 -1 5 1128 435 282 18 0 chr6 71224630 71224740 -78292297 + PB1D10 SINE Alu 5 116 -1 5 1128 393 22 0 0 chr6 71224812 71224858 -78292179 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1128 213 39 0 0 chr6 71224884 71224910 -78292127 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1128 285 183 141 0 chr6 71224967 71225038 -78291999 + PB1 SINE Alu 40 120 -7 5 1128 358 315 187 3 chr6 71225413 71225760 -78291277 - LTR80A LTR ERVL -26 557 147 5 1128 477 256 60 0 chr6 71225970 71226087 -78290950 + B1_Mur1 SINE Alu 26 149 0 5 1128 474 144 15 12 chr6 71226107 71226211 -78290826 + B1_Mus2 SINE Alu 11 142 -5 5 1128 958 67 89 0 chr6 71226623 71226758 -78290279 + B1_Mus1 SINE Alu 2 148 0 5 1128 413 84 28 0 chr6 71227128 71227199 -78289838 - MER2 DNA MER2_type -164 181 109 5 1128 288 289 48 58 chr6 71227483 71227586 -78289451 + B1F1 SINE Alu 6 107 -42 5 1128 438 281 24 16 chr6 71227579 71227702 -78289335 + RSINE1 SINE B4 42 165 0 5 1128 270 0 0 0 chr6 71228818 71228848 -78288189 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1128 565 226 52 8 chr6 71228859 71228993 -78288044 - RSINE1 SINE B4 -22 143 4 5 1128 224 231 200 0 chr6 71229088 71229154 -78287883 + MIR SINE MIR 35 112 -156 5 1128 21 0 0 0 chr6 71229362 71229383 -78287654 + AT_rich Low_complexity Low_complexity 1 21 0 5 1128 1385 89 16 0 chr6 71229703 71229893 -78287144 - B2_Mm2 SINE B2 -1 194 2 5 1128 854 258 173 13 chr6 71230027 71230468 -78286569 - L1MA4 LINE L1 -1794 5902 5430 5 1128 255 333 52 10 chr6 71230488 71230585 -78286452 - B4A SINE B4 -178 114 14 5 1128 304 227 128 64 chr6 71230611 71230705 -78286332 - RSINE1 SINE B4 -17 148 49 5 1128 768 329 123 42 chr6 71230756 71230864 -78286173 - Lx8 LINE L1 -35 7438 7322 5 1128 297 0 0 0 chr6 71230864 71230897 -78286140 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1128 768 329 123 42 chr6 71230897 71230929 -78286108 - Lx8 LINE L1 -152 7321 7297 5 1128 459 0 0 0 chr6 71230929 71230980 -78286057 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1128 1551 253 115 9 chr6 71230980 71231415 -78285622 - Lx7 LINE L1 -412 7284 6804 5 1128 851 166 36 0 chr6 71231718 71231857 -78285180 + B1_Mur2 SINE Alu 5 148 -1 5 1128 746 215 0 8 chr6 71231879 71232010 -78285027 + RSINE1 SINE B4 4 133 -32 5 1128 1061 256 99 55 chr6 71232352 71232877 -78284160 - L1ME2 LINE L1 -275 5889 5342 5 1128 22 0 0 0 chr6 71235638 71235660 -78281377 + AT_rich Low_complexity Low_complexity 1 22 0 5 1128 930 216 100 0 chr6 71237002 71237192 -78279845 + B3 SINE B2 1 209 -7 5 1128 482 0 17 0 chr6 71237358 71237416 -78279621 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 5 1128 1318 81 48 16 chr6 71237435 71237623 -78279414 + B2_Mm2 SINE B2 2 195 0 5 1128 322 306 10 30 chr6 71237636 71237656 -78279381 - PB1D10 SINE Alu -17 100 6 5 1128 385 234 13 0 chr6 71237656 71237733 -78279304 - ID_B1 SINE B4 -60 164 87 5 1128 289 270 158 14 chr6 71237743 71237882 -78279155 - L1M2 LINE L1 -2465 3678 3520 5 1128 572 75 73 31 chr6 71237893 71237989 -78279048 + B1_Mus2 SINE Alu 48 147 0 5 1128 419 244 78 57 chr6 71238083 71238108 -78278929 + L1M2 LINE L1 3656 3678 -2462 5 1128 481 301 28 0 chr6 71238108 71238251 -78278786 + B1_Mur2 SINE Alu 2 148 -1 5 1128 467 244 78 57 chr6 71238251 71238455 -78278582 + L1M2 LINE L1 3679 3890 -2250 5 1128 255 328 104 0 chr6 71238589 71238603 -78278434 + B1F1 SINE Alu 6 143 -6 5 1128 412 288 27 0 chr6 71238603 71238714 -78278323 + ID_B1 SINE B4 105 218 -6 5 1128 384 285 1 29 chr6 71238718 71238832 -78278205 + PB1D10 SINE Alu 4 111 -6 5 1128 520 359 6 0 chr6 71238974 71239130 -78277907 + RSINE1 SINE B4 3 159 -6 5 1128 1996 138 11 34 chr6 71239142 71239526 -78277511 - RMER16 LTR ERVK -113 420 1 5 1128 31 26 0 0 chr6 71239532 71239570 -78277467 + AT_rich Low_complexity Low_complexity 1 38 0 5 1128 1380 79 5 26 chr6 71239570 71239765 -78277272 + B2_Mm1t SINE B2 2 192 -1 5 1128 290 51 0 0 chr6 71239765 71239804 -78277233 - B2_Mm2 SINE B2 -155 40 2 5 1128 381 233 0 0 chr6 71239822 71239867 -78277170 + A-rich Low_complexity Low_complexity 1 45 0 5 1128 1199 68 0 0 chr6 71239867 71240013 -78277024 + B1_Mus1 SINE Alu 3 148 0 5 1128 381 233 0 0 chr6 71240013 71240032 -78277005 + A-rich Low_complexity Low_complexity 46 64 0 5 1128 1445 65 32 0 chr6 71240032 71240218 -78276819 + B2_Mm1a SINE B2 2 193 0 5 1128 381 233 0 0 chr6 71240218 71240268 -78276769 + A-rich Low_complexity Low_complexity 65 114 0 5 1128 961 122 48 24 chr6 71240276 71240444 -78276593 - ORR1A3 LTR MaLR -7 319 148 5 1128 4552 131 61 11 chr6 71240422 71241263 -78275774 - ORR1A3-int LTR MaLR -365 1598 716 5 1128 1477 145 16 90 chr6 71241219 71241529 -78275508 - MT2B LTR ERVL -314 287 1 5 1128 32 57 0 0 chr6 71241599 71241652 -78275385 + AT_rich Low_complexity Low_complexity 1 53 0 5 1128 878 219 119 98 chr6 71242401 71242830 -78274207 + RMER2 LTR ERV1 1 550 -17 5 1128 562 233 38 151 chr6 71243055 71243183 -78273854 + ID_B1 SINE B4 6 125 -99 5 1128 1245 48 0 0 chr6 71243183 71243330 -78273707 + B1_Mus1 SINE Alu 2 148 0 5 1128 562 233 38 151 chr6 71243330 71243439 -78273598 + ID_B1 SINE B4 126 216 -8 5 1128 353 296 93 0 chr6 71244415 71244523 -78272514 - B1F1 SINE Alu -31 118 1 5 1128 449 312 85 5 chr6 71245000 71245200 -78271837 + ID_B1 SINE B4 9 224 0 5 1128 1037 72 51 0 chr6 71245317 71245455 -78271582 - B1_Mm SINE Alu -1 146 2 5 1128 230 200 0 0 chr6 71246030 71246070 -78270967 + ID_B1 SINE B4 103 142 -82 5 1128 214 229 62 0 chr6 71246034 71246082 -78270955 + B1_Mus1 SINE Alu 27 77 -71 5 1128 1001 100 14 35 chr6 71246085 71246230 -78270807 - B1_Mus1 SINE Alu -6 142 1 5 1128 555 247 71 26 chr6 71246255 71246409 -78270628 + RSINE1 SINE B4 5 165 0 5 1128 1524 57 16 5 chr6 71247091 71247284 -78269753 - B2_Mm2 SINE B2 0 195 1 5 1128 560 257 146 0 chr6 71247468 71247639 -78269398 + ID_B1 SINE B4 2 197 -27 5 1128 459 205 275 30 chr6 71248118 71248249 -78268788 - RSINE1 SINE B4 0 165 3 5 1128 666 135 13 0 chr6 71248614 71248753 -78268284 - B1_Mus1 SINE Alu 0 149 6 5 1128 677 215 83 35 chr6 71248900 71249069 -78267968 - B3 SINE B2 -38 178 2 5 1128 953 256 54 18 chr6 71249137 71249416 -78267621 + B4 SINE B4 2 290 -2 5 1128 492 230 96 30 chr6 71249687 71249853 -78267184 + B3A SINE B2 3 179 -19 5 1128 423 148 37 0 chr6 71251470 71251551 -78265486 - BC1_Mm scRNA scRNA -68 84 1 5 1128 454 206 48 29 chr6 71251984 71252089 -78264948 + RSINE1 SINE B4 2 108 -57 5 1128 386 212 117 17 chr6 71252653 71252773 -78264264 + RSINE1 SINE B4 2 133 -32 5 1128 416 231 99 8 chr6 71252827 71252958 -78264079 + MER58D DNA MER1_type 228 370 -16 5 1128 375 318 158 4 chr6 71253161 71253401 -78263636 + B4A SINE B4 4 280 -12 5 1128 228 182 0 0 chr6 71253706 71253750 -78263287 + CT-rich Low_complexity Low_complexity 2 45 0 5 1128 868 135 35 7 chr6 71253752 71253894 -78263143 - B1_Mur4 SINE Alu 0 150 5 5 1128 580 226 83 0 chr6 71254624 71254757 -78262280 + RSINE1 SINE B4 7 150 -15 5 1128 854 277 58 14 chr6 71255912 71256190 -78260847 + B4A SINE B4 1 290 -2 5 1128 1335 107 0 6 chr6 71256320 71256499 -78260538 + B2_Mm2 SINE B2 1 178 -17 5 1128 432 0 0 0 chr6 71256499 71256547 -78260490 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1128 605 243 15 0 chr6 71256883 71257019 -78260018 + ID_B1 SINE B4 85 222 -2 5 1128 366 143 0 0 chr6 71257051 71257114 -78259923 + (TATG)n Simple_repeat Simple_repeat 4 66 0 6 1128 572 283 39 64 chr6 71257153 71257436 -78259601 - B4A SINE B4 -12 280 5 6 1128 305 203 0 0 chr6 71258203 71258267 -78258770 + B3 SINE B2 6 69 -147 6 1128 939 84 76 19 chr6 71258265 71258422 -78258615 - B2_Mm1a SINE B2 -1 192 27 6 1128 440 261 14 76 chr6 71258401 71258546 -78258491 + B3 SINE B2 25 160 -56 6 1128 410 0 20 0 chr6 71258673 71258723 -78258314 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1128 234 0 0 0 chr6 71258723 71258748 -78258289 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 1128 234 0 0 0 chr6 71258776 71258802 -78258235 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 6 1128 425 312 159 0 chr6 71258811 71258949 -78258088 - RSINE1 SINE B4 0 165 6 6 1128 503 101 0 12 chr6 71258950 71259030 -78258007 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1128 426 288 36 0 chr6 71259033 71259144 -78257893 - PB1D9 SINE Alu -5 115 1 6 1128 264 238 286 0 chr6 71259233 71259317 -78257720 - PB1D10 SINE Alu -7 110 3 6 1128 23 0 0 0 chr6 71259321 71259344 -78257693 + AT_rich Low_complexity Low_complexity 1 23 0 6 1128 353 99 345 26 chr6 71259391 71259504 -78257533 - B2_Mm2 SINE B2 0 195 47 6 1128 1285 97 11 0 chr6 71259568 71259743 -78257294 - B2_Mm1t SINE B2 -15 178 2 6 1128 271 216 0 0 chr6 71259819 71259870 -78257167 + RSINE1 SINE B4 84 134 -31 6 1128 3538 20 2 0 chr6 71260166 71260561 -78256476 + MTA_Mm LTR MaLR 1 396 0 6 1128 9039 40 6 1 chr6 71260561 71261653 -78255384 + MTA_Mm-int LTR MaLR 1 1098 0 6 1128 3538 20 2 0 chr6 71261653 71262048 -78254989 + MTA_Mm LTR MaLR 1 396 0 6 1128 473 279 7 0 chr6 71262189 71262325 -78254712 + ID_B1 SINE B4 81 217 -7 6 1128 332 314 148 0 chr6 71262630 71262799 -78254238 + ID_B1 SINE B4 30 223 -1 6 1128 256 167 20 30 chr6 71263046 71263145 -78253892 + C-rich Low_complexity Low_complexity 3 100 0 6 1128 630 155 0 0 chr6 71263421 71263537 -78253500 + (TG)n Simple_repeat Simple_repeat 1 116 0 6 1128 255 197 47 47 chr6 71263537 71263601 -78253436 - PB1D9 SINE Alu -11 109 46 6 1128 264 270 40 26 chr6 71263605 71263681 -78253356 - B3 SINE B2 -48 168 92 6 1128 851 28 9 0 chr6 71263922 71264028 -78253009 + (TTC)n Simple_repeat Simple_repeat 2 108 0 6 1128 344 270 51 80 chr6 71264414 71264551 -78252486 - ID_B1 SINE B4 -1 223 91 6 1128 812 178 0 52 chr6 71264567 71264721 -78252316 + B1_Mur2 SINE Alu 2 147 -2 6 1128 211 260 38 76 chr6 71265338 71265417 -78251620 + PB1 SINE Alu 34 109 -18 6 1128 569 232 36 7 chr6 71265420 71265559 -78251478 + RSINE1 SINE B4 4 146 -19 6 1128 186 43 0 0 chr6 71265594 71265617 -78251420 + (GAAA)n Simple_repeat Simple_repeat 3 25 0 6 1128 1076 133 0 6 chr6 71265627 71265808 -78251229 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1128 929 168 6 0 chr6 71265808 71265987 -78251050 + GA-rich Low_complexity Low_complexity 1 180 0 6 1128 380 77 12 37 chr6 71266243 71266324 -78250713 + (TTTTG)n Simple_repeat Simple_repeat 1 79 0 6 1128 229 311 70 51 chr6 71266443 71266599 -78250438 + MLT1J2 LTR MaLR 272 430 -18 6 1128 881 261 120 56 chr6 71266705 71267098 -78249939 - MTD LTR MaLR 0 419 2 6 1128 671 269 104 37 chr6 71267301 71267598 -78249439 + L1M4 LINE L1 5329 5645 -529 6 1128 427 255 0 11 chr6 71267636 71267731 -78249306 + RCHARR1 DNA MER1_type 4 97 -877 6 1128 715 283 89 0 chr6 71267802 71268060 -78248977 + RCHARR1 DNA MER1_type 201 481 -493 6 1128 537 71 214 0 chr6 71268093 71268191 -78248846 - B1_Mur4 SINE Alu -1 149 31 6 1128 250 188 0 30 chr6 71268194 71268260 -78248777 + RCHARR1 DNA MER1_type 463 526 -448 6 1128 885 246 21 0 chr6 71268278 71268465 -78248572 + B3 SINE B2 10 200 -16 6 1128 396 0 0 0 chr6 71268465 71268509 -78248528 + (TAAAA)n Simple_repeat Simple_repeat 5 48 0 6 1128 1009 57 0 34 chr6 71268552 71268581 -78248456 + B1_Mus2 SINE Alu 6 34 -113 6 1128 4444 10 0 0 chr6 71268581 71269063 -78247974 - LTRIS_Mm LTR ERV1 0 482 1 6 1128 1009 57 0 34 chr6 71269063 71269179 -78247858 + B1_Mus2 SINE Alu 35 146 -1 6 1128 257 125 0 30 chr6 71269179 71269245 -78247792 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 6 1128 851 214 86 22 chr6 71269245 71269513 -78247524 + RCHARR1 DNA MER1_type 568 852 -122 6 1128 542 252 69 3 chr6 71269514 71269670 -78247367 + B3A SINE B2 1 155 -40 6 1128 1669 126 66 10 chr6 71269670 71269959 -78247078 + L1Md_A LINE L1 6275 6579 -3 6 1128 406 286 52 36 chr6 71269959 71269994 -78247043 + B2_Mm2 SINE B2 156 194 -1 6 1128 222 214 0 0 chr6 71270028 71270070 -78246967 + A-rich Low_complexity Low_complexity 2 43 0 6 1128 246 321 18 18 chr6 71270243 71270354 -78246683 + RSINE1 SINE B4 44 154 -11 6 1128 288 77 0 0 chr6 71270354 71270393 -78246644 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1128 1261 79 17 17 chr6 71270393 71270573 -78246464 + Lx2 LINE L1 6570 6749 -248 6 1128 258 56 0 0 chr6 71270573 71270609 -78246428 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 6 1128 856 74 0 20 chr6 71270621 71270772 -78246265 + RMER17B LTR ERVK 313 460 -498 6 1128 412 281 15 7 chr6 71270787 71270923 -78246114 + RCHARR1 DNA MER1_type 838 974 0 6 1128 663 86 0 0 chr6 71271571 71271664 -78245373 - B1_Mus2 SINE Alu 0 147 55 6 1128 381 252 54 0 chr6 71271673 71271784 -78245253 - B1_Mur1 SINE Alu -7 142 26 6 1128 396 0 0 0 chr6 71272247 71272291 -78244746 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1128 284 210 136 0 chr6 71272296 71272377 -78244660 + MTEa LTR MaLR 242 333 -46 6 1128 501 17 0 0 chr6 71272652 71272710 -78244327 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1128 209 283 0 0 chr6 71273109 71273155 -78243882 + polypurine Low_complexity Low_complexity 3 48 0 6 1128 295 250 209 13 chr6 71273801 71273959 -78243078 + MIRb SINE MIR 52 240 -28 6 1128 524 248 0 0 chr6 71274584 71274689 -78242348 - B1F1 SINE Alu -44 105 1 6 1128 301 212 30 0 chr6 71275476 71275542 -78241495 - RSINE1 SINE B4 -95 70 3 6 1128 246 128 0 0 chr6 71275553 71275592 -78241445 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 6 1128 970 133 58 37 chr6 71275621 71275809 -78241228 - B2_Mm2 SINE B2 -3 192 1 6 1128 534 252 59 0 chr6 71275822 71275957 -78241080 - ID_B1 SINE B4 0 224 82 6 1128 267 295 0 0 chr6 71276371 71276500 -78240537 + (CA)n Simple_repeat Simple_repeat 1 129 0 6 1128 225 290 101 0 chr6 71277175 71277244 -78239793 - MER33 DNA MER1_type -195 129 54 6 1128 780 171 20 46 chr6 71278723 71278876 -78238161 - B1_Mur2 SINE Alu 0 149 1 6 1128 216 0 0 0 chr6 71279012 71279036 -78238001 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1128 467 94 0 0 chr6 71279039 71279103 -78237934 - B1_Mur4 SINE Alu -7 143 80 6 1128 837 203 14 0 chr6 71279180 71279328 -78237709 + ID_B1 SINE B4 3 152 -72 6 1128 403 203 0 0 chr6 71279326 71279395 -78237642 - B1_Mus1 SINE Alu -78 70 2 6 1128 207 250 39 0 chr6 71279824 71279876 -78237161 + CT-rich Low_complexity Low_complexity 4 57 0 6 1128 586 179 66 0 chr6 71280126 71280232 -78236805 + RSINE1 SINE B4 10 122 -43 6 1128 405 0 0 0 chr6 71280232 71280277 -78236760 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1128 1044 226 18 9 chr6 71281349 71281568 -78235469 + ID_B1 SINE B4 3 223 -1 6 1128 994 283 51 61 chr6 71281577 71281871 -78235166 + B4A SINE B4 1 291 -1 6 1128 289 216 74 5 chr6 71282251 71282339 -78234698 + PB1D9 SINE Alu 48 150 0 6 1128 758 222 20 75 chr6 71283340 71283548 -78233489 + ID_B1 SINE B4 70 271 -21 6 1128 233 329 33 105 chr6 71283754 71283907 -78233130 + MIR SINE MIR 76 217 -45 6 1128 527 252 98 98 chr6 71284154 71284238 -78232799 + ID_B1 SINE B4 1 219 0 6 1128 742 134 7 59 chr6 71284238 71284373 -78232664 + B1_Mur2 SINE Alu 17 144 -5 6 1128 255 246 62 0 chr6 71284375 71284440 -78232597 + ID_B1 SINE B4 144 212 -12 6 1128 770 230 53 10 chr6 71284630 71284836 -78232201 - ID_B1 SINE B4 -8 216 2 6 1128 261 0 0 0 chr6 71284925 71284954 -78232083 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1128 396 0 0 0 chr6 71284954 71284997 -78232040 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1128 278 146 0 0 chr6 71285102 71285143 -78231894 - RSINE1 SINE B4 -120 45 5 6 1128 265 260 110 0 chr6 71285587 71285660 -78231377 + ID_B1 SINE B4 78 158 -66 6 1128 26 30 0 0 chr6 71285664 71285697 -78231340 + AT_rich Low_complexity Low_complexity 1 33 0 6 1128 590 206 91 49 chr6 71285697 71285840 -78231197 + B1_Mur3 SINE Alu 1 149 0 6 1128 375 141 0 0 chr6 71285884 71285948 -78231089 + (GGGAGA)n Simple_repeat Simple_repeat 4 67 0 6 1128 291 282 41 27 chr6 71286312 71286385 -78230652 - RSINE1 SINE B4 -90 75 2 6 1128 405 86 0 0 chr6 71286408 71286466 -78230571 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1128 213 140 0 23 chr6 71286479 71286523 -78230514 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 6 1128 1236 34 0 7 chr6 71287337 71287483 -78229554 + B1_Mus2 SINE Alu 2 146 -1 6 1128 210 143 0 0 chr6 71287484 71287533 -78229504 + (A)n Simple_repeat Simple_repeat 1 49 0 6 1128 270 0 0 0 chr6 71287825 71287855 -78229182 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1128 548 278 9 0 chr6 71287969 71288084 -78228953 - B1_Mur1 SINE Alu -31 118 3 6 1128 260 294 15 0 chr6 71288023 71288091 -78228946 - B4A SINE B4 -143 149 81 6 1128 424 300 100 0 chr6 71288132 71288252 -78228785 - RSINE1 SINE B4 -29 136 5 6 1128 1469 23 6 0 chr6 71288273 71288450 -78228587 + (TTC)n Simple_repeat Simple_repeat 3 180 0 6 1128 577 172 8 8 chr6 71288450 71288564 -78228473 + CT-rich Low_complexity Low_complexity 2 116 0 6 1128 405 58 0 0 chr6 71289987 71290039 -78226998 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1128 658 234 33 44 chr6 71290171 71290354 -78226683 + RMER1C Other Other 1029 1209 -133 7 1128 207 162 0 0 chr6 71290360 71290397 -78226640 + (TCTG)n Simple_repeat Simple_repeat 1 37 0 7 1128 923 168 121 0 chr6 71290501 71290674 -78226363 + B3 SINE B2 13 206 -10 7 1128 559 233 14 28 chr6 71290807 71290826 -78226211 + ID SINE ID 65 81 -143 7 1128 447 246 8 81 chr6 71290826 71290950 -78226087 + PB1D10 SINE Alu 3 117 0 7 1128 283 247 97 0 chr6 71291799 71291892 -78225145 - ID_B1 SINE B4 -2 222 121 7 1128 255 27 123 0 chr6 71291892 71291965 -78225072 + (TCCA)n Simple_repeat Simple_repeat 3 84 0 7 1128 385 177 7 25 chr6 71293343 71293438 -78223599 + B1_Mur4 SINE Alu 53 150 0 7 1128 583 207 43 0 chr6 71293455 71293571 -78223466 + B1F SINE Alu 24 144 -5 7 1128 317 311 9 9 chr6 71293646 71293753 -78223284 + ID_B1 SINE B4 82 188 -36 7 1128 493 254 17 8 chr6 71294104 71294223 -78222814 + RSINE1 SINE B4 42 161 -4 7 1128 324 0 0 0 chr6 71294236 71294272 -78222765 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1128 913 77 35 12 chr6 71294303 71294475 -78222562 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 7 1128 219 36 0 0 chr6 71294475 71294503 -78222534 + (CAGA)n Simple_repeat Simple_repeat 4 31 0 7 1128 692 305 59 10 chr6 71294543 71294745 -78222292 + Tigger5 DNA MER2_type 2 213 -2193 7 1128 253 378 0 0 chr6 71294868 71294958 -78222079 + Tigger5 DNA MER2_type 2291 2380 -26 7 1128 232 216 5 11 chr6 71295366 71295422 -78221615 - ID SINE ID -236 56 2 7 1128 270 275 12 12 chr6 71295424 71295505 -78221532 + L1MB1 LINE L1 4840 4920 -1220 7 1128 455 281 29 41 chr6 71295560 71295731 -78221306 + L1MB1 LINE L1 5027 5195 -945 7 1128 362 257 79 122 chr6 71295736 71295900 -78221137 + RSINE1 SINE B4 9 165 0 7 1128 213 183 0 0 chr6 71295900 71295960 -78221077 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1128 311 226 134 34 chr6 71296072 71296191 -78220846 + L1MB1 LINE L1 5442 5572 -599 7 1128 452 338 58 0 chr6 71296225 71296379 -78220658 + RSINE1 SINE B4 3 165 0 7 1128 563 217 116 79 chr6 71296407 71296597 -78220440 + B3A SINE B2 1 197 -1 7 1128 601 268 74 56 chr6 71296630 71297047 -78219990 + L1MB1 LINE L1 5643 6064 -248 7 1128 512 30 0 15 chr6 71297308 71297375 -78219662 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 7 1128 609 237 42 0 chr6 71297413 71297531 -78219506 + ETnERV2-int LTR ERVK 7070 7192 -214 7 1128 310 245 112 0 chr6 71297946 71298044 -78218993 - ID_B1 SINE B4 -115 109 1 7 1128 701 217 44 6 chr6 71298096 71298254 -78218783 + B3A SINE B2 19 182 -16 7 1128 424 309 79 0 chr6 71298579 71298705 -78218332 + ID_B1 SINE B4 89 224 0 7 1128 366 80 0 0 chr6 71298715 71298765 -78218272 + (TGG)n Simple_repeat Simple_repeat 2 51 0 7 1128 770 136 40 0 chr6 71298765 71298890 -78218147 + B1_Mus2 SINE Alu 16 145 -2 7 1128 2623 31 85 0 chr6 71298980 71299297 -78217740 + ORR1A1 LTR MaLR 3 346 0 7 1128 514 72 0 0 chr6 71299724 71299807 -78217230 + L1_Mus3 LINE L1 6553 6635 -3 7 1128 187 31 62 0 chr6 71299858 71299890 -78217147 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 7 1128 24 53 0 0 chr6 71300304 71300342 -78216695 + AT_rich Low_complexity Low_complexity 1 38 0 7 1128 1265 27 0 13 chr6 71300349 71300498 -78216539 + B1_Mm SINE Alu 1 147 0 7 1128 396 0 0 0 chr6 71300561 71300605 -78216432 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 7 1128 237 264 0 36 chr6 71300630 71300685 -78216352 - B2_Mm2 SINE B2 -95 100 48 7 1128 1304 102 11 0 chr6 71300786 71300963 -78216074 - B2_Mm1t SINE B2 -14 179 1 7 1128 519 17 0 0 chr6 71301017 71301077 -78215960 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1128 342 0 0 0 chr6 71301077 71301114 -78215923 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1128 180 179 0 0 chr6 71301683 71301711 -78215326 - L3 LINE CR1 -119 4370 4343 7 1128 1741 255 33 7 chr6 71302253 71302680 -78214357 + Lx8 LINE L1 6325 6762 -711 7 1128 213 39 0 0 chr6 71302686 71302712 -78214325 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1129 230 132 26 0 chr6 71304193 71304231 -78212806 - ID_B1 SINE B4 -5 219 181 7 1129 220 188 79 47 chr6 71304231 71304260 -78212777 - B1F SINE Alu -1 133 46 7 1129 280 78 59 0 chr6 71304292 71304343 -78212694 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 7 1129 257 183 33 16 chr6 71304431 71304484 -78212553 + L1MB3 LINE L1 5900 5954 -229 7 1129 201 74 0 0 chr6 71304484 71304511 -78212526 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1129 209 222 16 0 chr6 71304601 71304664 -78212373 + GA-rich Low_complexity Low_complexity 2 65 0 7 1129 217 236 18 0 chr6 71304746 71304801 -78212236 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1129 369 248 106 35 chr6 71304830 71304972 -78212065 + L1MB3 LINE L1 5936 6087 -96 7 1129 568 218 90 0 chr6 71305331 71305464 -78211573 + ID_B1 SINE B4 80 224 0 7 1129 22 35 0 0 chr6 71305548 71305577 -78211460 + AT_rich Low_complexity Low_complexity 1 29 0 7 1129 226 308 16 96 chr6 71305857 71306044 -78210993 + YREP_Mm Unknown Unknown 126 297 -1515 7 1129 586 250 0 8 chr6 71305937 71306062 -78210975 - ID_B1 SINE B4 -17 207 84 7 1129 340 279 139 0 chr6 71306074 71306275 -78210762 - L1M2 LINE L1 -840 5303 5075 7 1129 497 255 120 33 chr6 71306317 71306467 -78210570 - RSINE1 SINE B4 0 165 3 7 1129 1166 69 7 0 chr6 71306932 71307077 -78209960 - B1_Mus1 SINE Alu 0 148 3 7 1129 249 305 60 38 chr6 71307884 71308017 -78209020 - MIRb SINE MIR -90 178 43 7 1129 320 282 39 0 chr6 71308263 71308341 -78208696 + B4A SINE B4 4 84 -208 7 1129 276 196 90 81 chr6 71308767 71308878 -78208159 - B1F SINE Alu -33 116 5 7 1129 1131 101 0 0 chr6 71309217 71309366 -78207671 + B1_Mur4 SINE Alu 2 150 0 7 1129 291 265 293 0 chr6 71309390 71309516 -78207521 + RSINE1 SINE B4 1 163 -2 7 1129 569 228 59 0 chr6 71310107 71310243 -78206794 + ID_B1 SINE B4 79 222 -2 7 1129 181 245 59 39 chr6 71310694 71310745 -78206292 - L3 LINE CR1 -788 3701 3650 7 1129 1408 226 66 36 chr6 71312152 71312514 -78204523 + MTD LTR MaLR 28 400 -19 7 1129 870 187 154 5 chr6 71312771 71312959 -78204078 + B3 SINE B2 1 216 0 7 1129 495 84 0 0 chr6 71312980 71313051 -78203986 + L1_Mus1 LINE L1 6497 6567 0 7 1129 201 254 0 0 chr6 71313069 71313140 -78203897 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 1129 436 244 161 31 chr6 71313140 71313301 -78203736 - B3A SINE B2 -16 182 1 7 1129 805 254 57 5 chr6 71313331 71313525 -78203512 - ID_B1 SINE B4 -18 206 3 7 1129 788 260 116 60 chr6 71313722 71314066 -78202971 - L1MB3 LINE L1 -8 6175 5803 7 1129 944 178 126 0 chr6 71314066 71314257 -78202780 - B3 SINE B2 -1 215 1 7 1129 788 260 116 60 chr6 71314257 71314362 -78202675 - L1MB3 LINE L1 -381 5802 5701 7 1129 256 300 27 129 chr6 71314494 71314626 -78202411 + YREP_Mm Unknown Unknown 91 306 -1506 7 1129 485 261 26 51 chr6 71314626 71314743 -78202294 - ID_B1 SINE B4 -31 193 80 7 1129 229 282 219 17 chr6 71314757 71314876 -78202161 - Charlie2b DNA MER1_type -324 2458 2316 7 1129 704 186 0 0 chr6 71314944 71315057 -78201980 - PB1D9 SINE Alu -6 114 2 7 1129 430 268 64 21 chr6 71315543 71315684 -78201353 - RSINE1 SINE B4 -6 159 13 7 1129 396 229 12 35 chr6 71315725 71315811 -78201226 - RSINE1 SINE B4 -80 85 2 7 1129 650 262 8 0 chr6 71316001 71316127 -78200910 - ID_B1 SINE B4 -5 219 93 7 1129 361 324 43 35 chr6 71316127 71316140 -78200897 - B1_Mus1 SINE Alu -3 143 4 7 1129 489 242 0 27 chr6 71316549 71316732 -78200305 + (TATG)n Simple_repeat Simple_repeat 1 178 0 7 1129 342 265 0 0 chr6 71316758 71316826 -78200211 - ID4_ SINE ID -14 69 2 7 1129 1306 204 155 29 chr6 71316838 71317187 -78199850 - Lx8 LINE L1 -2 7471 7079 7 1129 1327 232 113 61 chr6 71317191 71317445 -78199592 + L1_Rod LINE L1 5277 5562 -285 7 1129 2554 173 90 4 chr6 71317445 71317488 -78199549 - MT2A LTR ERVL -3 530 463 7 1129 315 0 0 0 chr6 71317488 71317523 -78199514 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1129 2554 173 90 4 chr6 71317523 71317967 -78199070 - MT2A LTR ERVL -71 462 2 7 1129 1327 232 113 61 chr6 71317967 71318170 -78198867 + L1_Rod LINE L1 5563 5758 -89 7 1129 713 270 65 33 chr6 71318172 71318417 -78198620 + Lx8 LINE L1 6812 7064 -409 7 1129 1139 82 0 0 chr6 71318648 71318794 -78198243 + B1_Mus2 SINE Alu 2 147 0 7 1129 1676 212 63 14 chr6 71318835 71319185 -78197852 - ORR1D1 LTR MaLR 0 374 8 7 1129 290 238 32 97 chr6 71319223 71319235 -78197802 + MT2B LTR ERVL 152 157 -444 7 1129 590 259 7 41 chr6 71319235 71319380 -78197657 + B1_Mur1 SINE Alu 2 141 -8 7 1129 696 145 21 0 chr6 71320122 71320267 -78196770 + (CA)n Simple_repeat Simple_repeat 1 148 0 7 1129 244 301 21 11 chr6 71320268 71320362 -78196675 + (CATA)n Simple_repeat Simple_repeat 3 97 0 7 1129 220 230 153 106 chr6 71320438 71320465 -78196572 + B2_Mm2 SINE B2 10 94 -101 7 1129 495 272 9 17 chr6 71320465 71320581 -78196456 + RSINE1 SINE B4 48 162 -3 7 1129 220 230 153 106 chr6 71320581 71320608 -78196429 + B2_Mm2 SINE B2 95 187 -8 7 1129 1221 34 0 20 chr6 71320835 71320984 -78196053 + B1_Mm SINE Alu 2 147 0 7 1129 633 238 254 5 chr6 71321285 71321505 -78195532 - B4A SINE B4 -17 275 1 7 1129 481 238 12 128 chr6 71321566 71321730 -78195307 + RSINE1 SINE B4 21 165 0 7 1129 481 252 58 22 chr6 71321884 71322022 -78195015 + B1F SINE Alu 5 147 -2 7 1129 360 293 17 25 chr6 71323012 71323131 -78193906 + ID_B1 SINE B4 107 224 0 7 1129 218 236 5 0 chr6 71324088 71324140 -78192897 - MIR SINE MIR -97 165 117 7 1129 474 275 0 97 chr6 71325392 71325537 -78191500 - ID_B1 SINE B4 -13 211 81 7 1129 1145 70 0 0 chr6 71325584 71325727 -78191310 - B1_Mus1 SINE Alu -5 143 1 7 1129 219 325 0 48 chr6 71326554 71326638 -78190399 + MIRc SINE MIR 43 122 -146 8 1129 195 100 0 0 chr6 71326755 71326785 -78190252 + (CG)n Simple_repeat Simple_repeat 2 31 0 8 1129 4155 186 35 52 chr6 71327603 71328570 -78188467 - RLTR13A2 LTR ERVK 0 958 8 8 1129 566 253 40 7 chr6 71329202 71329353 -78187684 - ID_B1 SINE B4 0 224 69 8 1129 3107 146 45 29 chr6 71329355 71329459 -78187578 - RLTR20B2 LTR ERVK 0 560 455 8 1129 252 0 0 0 chr6 71329459 71329487 -78187550 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1129 3107 146 45 29 chr6 71329487 71329933 -78187104 - RLTR20B2 LTR ERVK -106 454 1 8 1129 397 261 11 11 chr6 71330317 71330410 -78186627 + B1_Mur2 SINE Alu 3 95 -54 8 1129 298 329 51 0 chr6 71330401 71330480 -78186557 - RSINE1 SINE B4 -82 83 1 8 1129 315 180 0 22 chr6 71330723 71330789 -78186248 - B2_Mm2 SINE B2 -107 109 47 8 1129 1347 84 11 0 chr6 71330818 71330997 -78186040 - B2_Mm1t SINE B2 -11 182 2 8 1129 192 231 0 0 chr6 71331050 71331102 -78185935 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 8 1129 2189 166 8 19 chr6 71331155 71331518 -78185519 + ORR1B2 LTR MaLR 1 359 -8 8 1129 254 300 76 70 chr6 71331871 71332060 -78184977 + ORR1E LTR MaLR 76 256 -114 8 1129 831 219 47 28 chr6 71332116 71332327 -78184710 + B3 SINE B2 2 216 0 8 1129 565 269 42 37 chr6 71332834 71332942 -78184095 + B4 SINE B4 102 211 -81 8 1129 198 71 0 0 chr6 71332942 71332970 -78184067 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 8 1129 569 269 42 37 chr6 71332970 71333050 -78183987 + B4 SINE B4 212 291 -1 8 1129 1497 168 44 75 chr6 71333144 71333505 -78183532 + RMER6A LTR ERVK 1 350 -406 8 1129 300 53 0 0 chr6 71333513 71333551 -78183486 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1129 224 184 0 0 chr6 71333638 71333676 -78183361 + ID SINE ID 4 41 -183 8 1129 228 69 0 0 chr6 71334108 71334137 -78182900 - B3A SINE B2 -79 119 91 8 1129 922 235 134 22 chr6 71334240 71334651 -78182386 + RLTR40 LTR ERVK 200 749 -68 8 1129 8088 58 12 0 chr6 71334660 71335990 -78181047 - L1_Mus1 LINE L1 -2 6565 5221 8 1129 2461 87 15 58 chr6 71335998 71336340 -78180697 - ORR1A2 LTR MaLR 0 327 1 8 1129 536 169 0 0 chr6 71336371 71336454 -78180583 - B3A SINE B2 -115 83 1 8 1129 258 192 0 0 chr6 71336578 71336630 -78180407 + (TA)n Simple_repeat Simple_repeat 1 52 0 8 1129 1345 34 0 0 chr6 71336644 71336791 -78180246 - B1_Mm SINE Alu 0 147 1 8 1129 343 332 84 15 chr6 71337015 71337217 -78179820 - LTR73 LTR ERV1 -75 497 282 8 1129 541 188 253 0 chr6 71337205 71337359 -78179678 - B3 SINE B2 -23 193 1 8 1129 264 231 0 0 chr6 71337786 71337838 -78179199 + MTD LTR MaLR 52 103 -316 8 1129 234 189 19 0 chr6 71337833 71337886 -78179151 + ORR1D1 LTR MaLR 321 374 0 8 1129 1234 48 7 0 chr6 71338262 71338407 -78178630 + B1_Mus2 SINE Alu 1 146 -1 8 1129 307 113 0 27 chr6 71338409 71338482 -78178555 + (CAAAA)n Simple_repeat Simple_repeat 3 73 0 8 1129 21 0 0 0 chr6 71338761 71338782 -78178255 + AT_rich Low_complexity Low_complexity 1 21 0 8 1129 611 264 16 16 chr6 71344008 71344135 -78172902 - ID_B1 SINE B4 -11 213 87 8 1129 21 0 0 0 chr6 71344181 71344202 -78172835 + AT_rich Low_complexity Low_complexity 1 21 0 8 1129 305 195 21 84 chr6 71344417 71344512 -78172525 + B1_Mm SINE Alu 59 147 0 8 1129 490 240 0 10 chr6 71345298 71345399 -78171638 - PB1D10 SINE Alu -8 109 10 8 1129 234 279 23 92 chr6 71345324 71345411 -78171626 - MT2B2 LTR ERVL -343 241 161 8 1129 494 148 109 92 chr6 71345597 71345716 -78171321 + B1_Mus2 SINE Alu 2 122 -25 8 1129 351 0 0 0 chr6 71346131 71346170 -78170867 + (CAG)n Simple_repeat Simple_repeat 1 39 0 8 1129 387 273 50 10 chr6 71346463 71346563 -78170474 - B1F2 SINE Alu -2 147 44 8 1129 372 231 12 37 chr6 71346614 71346695 -78170342 - ID2 SINE ID -2 81 3 8 1129 231 103 0 0 chr6 71346722 71346761 -78170276 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 8 1129 398 368 100 0 chr6 71347853 71348152 -78168885 - Charlie1a DNA MER1_type -1019 436 108 8 1129 359 200 48 36 chr6 71348959 71349042 -78167995 + PB1D10 SINE Alu 24 107 -10 8 1129 359 250 12 36 chr6 71349822 71349905 -78167132 + ID4_ SINE ID 1 81 -2 8 1129 692 261 65 5 chr6 71349973 71350158 -78166879 - B3 SINE B2 -6 210 15 8 1129 340 254 14 0 chr6 71350519 71350590 -78166447 + ID4 SINE ID 2 73 -10 8 1129 274 330 41 116 chr6 71350676 71350943 -78166094 - Tigger6b DNA MER2_type -726 871 625 8 1129 264 324 0 0 chr6 71350950 71351018 -78166019 + RMER30 DNA MER1_type 1 68 -134 8 1129 589 268 72 2 chr6 71351042 71351283 -78165754 - Lx7 LINE L1 -1827 5869 5601 8 1129 255 243 57 0 chr6 71351290 71351360 -78165677 - Charlie12 DNA MER1_type -2782 91 18 8 1129 259 281 0 0 chr6 71351362 71351426 -78165611 - Tigger6b DNA MER2_type -992 605 542 8 1129 324 0 0 0 chr6 71351705 71351741 -78165296 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1129 2433 239 83 26 chr6 71352236 71353248 -78163789 + L1_Mur3 LINE L1 843 1908 -3972 8 1129 1255 114 0 66 chr6 71353248 71353446 -78163591 + B2_Mm2 SINE B2 2 186 -9 8 1129 1072 65 0 7 chr6 71353448 71353588 -78163449 + B1_Mm SINE Alu 9 147 0 8 1129 1064 194 29 70 chr6 71353605 71353921 -78163116 + L1_Mur3 LINE L1 1890 2192 -3688 8 1129 1079 152 49 38 chr6 71353921 71354106 -78162931 + B3 SINE B2 2 188 -28 8 1129 21 36 0 0 chr6 71354109 71354137 -78162900 + AT_rich Low_complexity Low_complexity 1 28 0 8 1129 2119 206 55 13 chr6 71354148 71354675 -78162362 + L1_Mur3 LINE L1 2185 2733 -3147 8 1129 392 202 24 56 chr6 71354676 71354759 -78162278 + L1_Mur3 LINE L1 2838 2921 -2959 8 1129 857 149 88 15 chr6 71354759 71354884 -78162153 + B1_Mus1 SINE Alu 3 139 -9 8 1129 198 0 0 0 chr6 71354884 71354906 -78162131 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 8 1129 392 202 24 56 chr6 71354916 71354958 -78162079 + L1_Mur3 LINE L1 2922 2959 -2921 8 1129 3258 186 38 39 chr6 71354966 71355576 -78161461 + L1_Mur3 LINE L1 3393 4011 -1869 8 1129 862 119 17 0 chr6 71355576 71355694 -78161343 - PB1D9 SINE Alu 0 120 1 8 1129 3258 186 38 39 chr6 71355694 71355820 -78161217 + L1_Mur3 LINE L1 4012 4128 -1752 8 1129 1904 147 19 28 chr6 71355821 71356144 -78160893 + ORR1A3 LTR MaLR 1 320 -6 8 1129 2456 142 71 0 chr6 71356150 71356560 -78160477 - RMER19B LTR ERVK -12 890 452 8 1129 3027 120 114 22 chr6 71356568 71357113 -78159924 + ORR1A3-int LTR MaLR 1 595 -1368 8 1129 2627 258 126 47 chr6 71357131 71358026 -78159011 + Lx7 LINE L1 5937 6902 -794 8 1129 364 176 0 29 chr6 71358025 71358095 -78158942 + Lx7 LINE L1 7263 7330 -366 8 1129 250 237 7 78 chr6 71358099 71358201 -78158836 + T-rich Low_complexity Low_complexity 38 132 0 8 1129 1275 21 21 0 chr6 71358201 71358345 -78158692 - B1_Mus1 SINE Alu 0 148 2 8 1129 250 237 7 78 chr6 71358345 71358384 -78158653 + T-rich Low_complexity Low_complexity 1 37 0 8 1129 36 23 0 0 chr6 71358454 71358497 -78158540 + AT_rich Low_complexity Low_complexity 1 43 0 8 1129 786 215 35 46 chr6 71358623 71358809 -78158228 - B3 SINE B2 -10 188 3 8 1129 332 323 50 0 chr6 71358848 71358947 -78158090 + RSINE1 SINE B4 9 112 -53 8 1129 297 0 0 0 chr6 71358947 71358980 -78158057 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1129 224 263 0 0 chr6 71359009 71359047 -78157990 + B4A SINE B4 86 123 -169 8 1129 287 286 35 35 chr6 71359172 71359259 -78157778 + PB1D10 SINE Alu 31 117 0 8 1129 659 211 78 0 chr6 71359543 71359671 -78157366 - ID_B1 SINE B4 -4 220 83 8 1129 361 243 202 10 chr6 71360019 71360115 -78156922 - B3 SINE B2 -18 198 83 8 1129 2043 105 53 0 chr6 71360115 71360419 -78156618 + ORR1A4 LTR MaLR 1 320 -9 8 1129 394 222 74 0 chr6 71360423 71360504 -78156533 - B3 SINE B2 -129 87 1 8 1129 1608 68 5 0 chr6 71360784 71360976 -78156061 + B2_Mm1t SINE B2 1 193 0 8 1129 249 33 0 0 chr6 71361588 71361618 -78155419 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1129 507 157 210 24 chr6 71361896 71362020 -78155017 - ORR1D1 LTR MaLR -140 234 88 8 1129 237 271 17 0 chr6 71362044 71362103 -78154934 + MER58C DNA MER1_type 128 187 -28 8 1129 1382 175 159 41 chr6 71362103 71362443 -78154594 - ORR1C2 LTR MaLR 0 384 5 8 1129 559 259 32 64 chr6 71362588 71362745 -78154292 + RSINE1 SINE B4 5 156 -9 8 1129 335 23 0 22 chr6 71363355 71363400 -78153637 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 8 1129 214 246 30 15 chr6 71364391 71364457 -78152580 + PB1D10 SINE Alu 1 67 -50 8 1129 21 0 0 0 chr6 71365122 71365143 -78151894 + AT_rich Low_complexity Low_complexity 1 21 0 8 1129 333 0 0 0 chr6 71365310 71365347 -78151690 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1129 257 304 32 11 chr6 71365442 71365535 -78151502 + L1MEf LINE L1 762 856 -5691 8 1129 285 322 65 22 chr6 71365779 71365871 -78151166 - RSINE1 SINE B4 -68 97 2 8 1129 307 284 149 54 chr6 71365911 71366187 -78150850 + L1MEf LINE L1 1334 1635 -5005 8 1129 371 256 62 146 chr6 71366256 71366448 -78150589 + B4 SINE B4 4 179 -113 8 1129 461 309 87 12 chr6 71366511 71366770 -78150267 + L1MEf LINE L1 1725 2020 -4620 8 1129 588 135 288 0 chr6 71366771 71366869 -78150168 + B1_Mur4 SINE Alu 1 117 -33 8 1129 207 0 0 0 chr6 71366869 71366892 -78150145 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1129 588 135 288 0 chr6 71366892 71366904 -78150133 + B1_Mur4 SINE Alu 118 141 -9 8 1129 198 0 0 0 chr6 71366906 71366928 -78150109 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1129 1267 22 0 0 chr6 71367058 71367194 -78149843 - B1_Mus1 SINE Alu -12 136 1 8 1129 440 241 65 0 chr6 71367834 71367942 -78149095 - ID_B1 SINE B4 -3 221 107 8 1129 762 188 118 0 chr6 71367986 71368130 -78148907 + RLTR42 LTR ERVK 1 161 -78 8 1129 2371 66 3 59 chr6 71368132 71368470 -78148567 - ORR1A2 LTR MaLR -8 319 1 8 1129 469 96 27 14 chr6 71368470 71368544 -78148493 + RLTR42 LTR ERVK 165 239 0 8 1129 231 215 90 30 chr6 71369198 71369265 -78147772 + MT2B2 LTR ERVL 180 250 -334 8 1129 324 232 7 0 chr6 71369205 71369278 -78147759 + PB1D10 SINE Alu 35 110 -39 8 1129 851 189 14 0 chr6 71369283 71369426 -78147611 + B1_Mus2 SINE Alu 2 146 -1 8 1129 335 267 154 56 chr6 71369988 71370274 -78146763 + L1M5 LINE L1 5289 5602 -638 8 1129 276 265 35 46 chr6 71371125 71371212 -78145825 - RSINE1 SINE B4 -66 99 14 9 1129 636 181 165 0 chr6 71371257 71371384 -78145653 + B1_Mur4 SINE Alu 3 150 0 9 1129 1986 155 185 6 chr6 71372123 71372480 -78144557 - MTC LTR MaLR 0 421 1 9 1129 2053 50 4 0 chr6 71373871 71374113 -78142924 - L1_Mus2 LINE L1 0 6566 6324 9 1129 1512 61 16 6 chr6 71374113 71374314 -78142723 + L1_Mus2 LINE L1 5919 6111 -455 9 1129 1281 42 0 0 chr6 71374387 71374530 -78142507 + B1_Mus1 SINE Alu 1 143 -5 9 1129 186 43 0 0 chr6 71374539 71374562 -78142475 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 9 1129 1000 149 224 22 chr6 71375114 71375293 -78141744 + B3 SINE B2 2 216 0 9 1129 200 59 0 29 chr6 71375451 71375486 -78141551 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1129 704 114 19 0 chr6 71376754 71376859 -78140178 - PB1D9 SINE Alu 0 120 14 9 1129 379 255 161 27 chr6 71376757 71376906 -78140131 - B4A SINE B4 -68 224 56 9 1129 2087 123 8 64 chr6 71376961 71377318 -78139719 + RLTR9B2 LTR ERVK 84 420 0 9 1129 363 213 108 102 chr6 71377320 71377477 -78139560 + ETnERV-int LTR ERVK 4 161 -3153 9 1129 487 96 40 39 chr6 71377483 71377589 -78139448 - RLTR9B LTR ERVK -316 99 1 9 1129 568 252 54 0 chr6 71378847 71378958 -78138079 + RSINE1 SINE B4 47 163 -2 9 1129 34 24 0 0 chr6 71379316 71379357 -78137680 + AT_rich Low_complexity Low_complexity 1 41 0 9 1129 461 358 93 20 chr6 71379815 71380117 -78136920 - L2 LINE L2 -398 3021 2698 9 1129 1232 50 0 14 chr6 71380597 71380740 -78136297 + B1_Mus2 SINE Alu 5 145 -2 9 1129 273 29 0 0 chr6 71380743 71380777 -78136260 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 9 1129 471 267 68 68 chr6 71381778 71381939 -78135098 + ID_B1 SINE B4 27 187 -37 9 1129 555 186 188 31 chr6 71382094 71382222 -78134815 - B1_Mur2 SINE Alu -1 148 1 9 1129 21 0 0 0 chr6 71383069 71383090 -78133947 + AT_rich Low_complexity Low_complexity 1 21 0 9 1129 3688 20 5 0 chr6 71385069 71385463 -78131574 + MTA_Mm LTR MaLR 1 396 0 9 1129 26 30 0 0 chr6 71385848 71385881 -78131156 + AT_rich Low_complexity Low_complexity 1 33 0 9 1129 227 260 50 88 chr6 71385902 71385982 -78131055 + ID4 SINE ID 4 80 -3 9 1129 201 147 0 0 chr6 71386951 71386985 -78130052 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1129 679 12 47 0 chr6 71387764 71387849 -78129188 + B1_Mm SINE Alu 59 147 0 9 1129 284 70 23 0 chr6 71387849 71387892 -78129145 + (GAA)n Simple_repeat Simple_repeat 2 45 0 9 1129 298 134 30 0 chr6 71388899 71388966 -78128071 + (TA)n Simple_repeat Simple_repeat 1 69 0 9 1129 233 282 16 39 chr6 71390293 71390422 -78126615 + (CCCCG)n Simple_repeat Simple_repeat 5 130 0 9 1129 468 0 0 0 chr6 71392308 71392360 -78124677 + (TC)n Simple_repeat Simple_repeat 2 53 0 9 1129 268 214 18 0 chr6 71392401 71392457 -78124580 + MIRb SINE MIR 189 245 -23 9 1129 1274 27 0 0 chr6 71392487 71392634 -78124403 - B1_Mus2 SINE Alu 0 147 1 9 1129 332 226 12 23 chr6 71392917 71393003 -78124034 - Charlie5 DNA MER1_type -2516 108 24 9 1129 1310 220 154 11 chr6 71393139 71393502 -78123535 + MTD LTR MaLR 5 419 0 9 1129 405 277 122 19 chr6 71393763 71393945 -78123092 + B3 SINE B2 1 187 -8 9 1129 269 220 34 0 chr6 71393950 71394009 -78123028 + ORR1E LTR MaLR 7 67 -292 9 1129 386 316 56 85 chr6 71394129 71394399 -78122638 + ORR1E LTR MaLR 85 346 -13 9 1129 941 274 66 38 chr6 71394731 71395096 -78121941 + MTE2b LTR MaLR 1 375 -4 9 1129 563 269 121 44 chr6 71395298 71395504 -78121533 - ID_B1 SINE B4 -2 222 1 9 1129 377 329 69 65 chr6 71395578 71395838 -78121199 + B4 SINE B4 5 265 -27 9 1129 1038 233 191 19 chr6 71395929 71396248 -78120789 + MTD LTR MaLR 9 382 -37 9 1129 207 0 0 0 chr6 71396283 71396306 -78120731 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1129 204 125 0 0 chr6 71396309 71396341 -78120696 + (GA)n Simple_repeat Simple_repeat 2 33 0 9 1129 270 81 0 0 chr6 71396990 71397027 -78120010 + (CCCCCA)n Simple_repeat Simple_repeat 6 42 0 9 1129 256 317 9 56 chr6 71397211 71397318 -78119719 + MIR3 SINE MIR 86 187 -21 9 1129 567 265 108 22 chr6 71397528 71397713 -78119324 + B3 SINE B2 3 203 -13 9 1129 4858 257 80 16 chr6 71397721 71399123 -78117914 + Lx7 LINE L1 5926 7417 -279 9 1129 710 267 42 14 chr6 71399347 71399560 -78117477 - ID_B1 SINE B4 -3 221 3 9 1129 623 245 55 25 chr6 71399563 71399764 -78117273 - L1MCa LINE L1 -4864 1644 1438 9 1129 688 250 21 111 chr6 71399773 71399936 -78117101 - L1MCa LINE L1 -6048 460 320 9 1129 1261 117 11 0 chr6 71399936 71400124 -78116913 - B2_Mm1t SINE B2 -2 191 2 9 1129 688 250 21 111 chr6 71400124 71400203 -78116834 - L1MCa LINE L1 -6189 319 240 9 1129 334 300 36 9 chr6 71400253 71400364 -78116673 - PB1D10 SINE Alu -1 116 3 9 1129 244 299 74 9 chr6 71400570 71400678 -78116359 + B1F1 SINE Alu 8 122 -27 9 1129 1060 227 0 18 chr6 71400782 71401002 -78116035 + B3 SINE B2 1 216 0 9 1129 4075 38 8 0 chr6 71401690 71402161 -78114876 + MT2C_Mm LTR ERVL 1 475 0 9 1129 338 288 119 16 chr6 71402166 71402360 -78114677 + L1MDa LINE L1 1064 1277 -5263 9 1129 603 271 0 15 chr6 71402360 71402491 -78114546 + RSINE1 SINE B4 4 132 -33 9 1129 225 0 0 0 chr6 71402498 71402523 -78114514 + (TC)n Simple_repeat Simple_repeat 1 25 0 9 1129 198 0 0 0 chr6 71402523 71402544 -78114493 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1129 386 283 145 43 chr6 71402775 71403030 -78114007 + L1MDa LINE L1 1580 1860 -4773 9 1129 477 244 91 16 chr6 71403159 71403346 -78113691 + L1MDa LINE L1 1869 2069 -4564 9 1129 716 270 122 0 chr6 71403381 71403577 -78113460 + ID_B1 SINE B4 5 224 0 9 1129 819 119 0 0 chr6 71403582 71403708 -78113329 + (GAAA)n Simple_repeat Simple_repeat 4 129 0 9 1129 5396 86 31 28 chr6 71403733 71405214 -78111823 + RLTR22_Mur LTR ERVK 1 1741 -107 9 1129 857 137 50 14 chr6 71405303 71405444 -78111593 - B1_Mus2 SINE Alu -1 146 1 9 1129 699 245 56 12 chr6 71405601 71405762 -78111275 - B3A SINE B2 -30 168 1 9 1129 283 235 15 0 chr6 71405764 71405832 -78111205 + MTEa LTR MaLR 310 378 -1 9 1129 303 228 108 11 chr6 71405837 71405930 -78111107 + L1MDa LINE L1 2260 2361 -4272 9 1129 335 258 97 32 chr6 71405941 71406065 -78110972 + L1MB4 LINE L1 5956 6087 -93 9 1129 902 268 73 26 chr6 71406063 71406607 -78110430 + L1MDa LINE L1 2427 2999 -3538 9 1129 576 247 75 161 chr6 71406630 71406829 -78110208 + B4A SINE B4 21 215 -77 9 1129 1104 211 14 14 chr6 71406829 71407045 -78109992 + B3 SINE B2 1 216 0 9 1129 576 247 75 161 chr6 71407045 71407125 -78109912 + B4A SINE B4 216 276 -16 9 1129 337 268 71 121 chr6 71407252 71407392 -78109645 + RSINE1 SINE B4 4 136 -29 9 1129 348 24 0 0 chr6 71407473 71407514 -78109523 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1129 644 292 0 0 chr6 71407515 71407669 -78109368 - B3A SINE B2 -43 155 2 9 1129 990 205 86 57 chr6 71407956 71408235 -78108802 - ORR1D2 LTR MaLR 0 370 84 9 1129 596 302 105 62 chr6 71408399 71408752 -78108285 - MLT1F2 LTR MaLR -188 372 5 9 1129 776 198 51 51 chr6 71409583 71409759 -78107278 - B3A SINE B2 -22 176 1 9 1129 578 192 114 38 chr6 71409829 71410013 -78107024 - MER2 DNA MER2_type -5 340 143 9 1129 711 283 49 13 chr6 71410462 71410688 -78106349 - B4A SINE B4 -42 250 17 9 1129 201 39 0 0 chr6 71411096 71411122 -78105915 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1129 306 0 0 0 chr6 71411129 71411163 -78105874 + (TA)n Simple_repeat Simple_repeat 2 35 0 9 1129 631 224 25 43 chr6 71411167 71411330 -78105707 - B3A SINE B2 -36 162 3 9 1129 800 192 49 88 chr6 71411945 71412150 -78104887 - B3A SINE B2 0 198 2 9 1129 854 137 7 0 chr6 71412274 71412413 -78104624 + B1_Mur4 SINE Alu 11 150 0 9 1129 284 135 0 50 chr6 71412440 71412541 -78104496 + (CAAA)n Simple_repeat Simple_repeat 1 96 0 9 1129 1444 211 42 70 chr6 71412683 71413066 -78103971 - ORR1D1 LTR MaLR 0 374 3 9 1129 222 62 0 0 chr6 71413125 71413157 -78103880 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1129 498 279 189 29 chr6 71413250 71413738 -78103299 - L1MD LINE L1 -2974 3172 2607 9 1129 1170 44 0 12 chr6 71413873 71414033 -78103004 + B2_Mm1t SINE B2 1 158 -35 9 1129 363 44 0 0 chr6 71414033 71414078 -78102959 + (GAAA)n Simple_repeat Simple_repeat 1 45 0 9 1129 482 261 92 0 chr6 71414797 71414916 -78102121 + ID_B1 SINE B4 88 217 -7 9 1129 943 269 234 23 chr6 71415015 71415625 -78101412 - Charlie6 DNA MER1_type -11 3489 2751 9 1129 315 65 0 0 chr6 71415709 71415755 -78101282 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1129 22 35 0 0 chr6 71416111 71416140 -78100897 + AT_rich Low_complexity Low_complexity 1 29 0 9 1129 214 106 85 0 chr6 71416156 71416203 -78100834 + T-rich Low_complexity Low_complexity 2 52 0 9 1129 1122 59 0 0 chr6 71416247 71416383 -78100654 + B1_Mus1 SINE Alu 1 136 -12 9 1129 432 0 0 0 chr6 71416384 71416432 -78100605 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 9 1129 321 274 114 6 chr6 71416894 71417052 -78099985 + L1ME2 LINE L1 5717 5891 -273 9 1129 304 179 21 21 chr6 71417190 71417287 -78099750 + (TCTCTG)n Simple_repeat Simple_repeat 4 100 0 9 1129 1337 133 14 0 chr6 71417373 71417584 -78099453 - URR1A DNA MER1_type -2 224 11 9 1129 279 256 13 13 chr6 71417899 71417978 -78099059 - ID4_ SINE ID -2 81 3 9 1129 791 301 42 0 chr6 71418411 71418604 -78098433 + 7SLRNA srpRNA srpRNA 1 201 -113 9 1129 912 148 35 0 chr6 71418709 71418851 -78098186 + B1_Mus2 SINE Alu 1 147 0 9 1129 369 198 0 0 chr6 71418861 71418942 -78098095 + (TG)n Simple_repeat Simple_repeat 2 82 0 9 1129 186 43 0 0 chr6 71418943 71418966 -78098071 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 9 1129 553 176 119 41 chr6 71419436 71419630 -78097407 + MTD LTR MaLR 207 407 -14 1 1129 1685 204 63 5 chr6 71419717 71420111 -78096926 - MTD LTR MaLR 0 419 3 1 1129 572 319 42 11 chr6 71420505 71420695 -78096342 + B4A SINE B4 9 204 -88 1 1129 622 79 73 20 chr6 71420699 71420821 -78096216 + ORR1A4 LTR MaLR 1 126 -200 1 1129 291 383 0 0 chr6 71421120 71421214 -78095823 - MLT1K LTR MaLR -344 251 158 1 1129 724 306 32 36 chr6 71421405 71421462 -78095575 - B4A SINE B4 -12 280 228 1 1129 659 241 20 7 chr6 71421462 71421608 -78095429 - B1_Mur1 SINE Alu 0 149 2 1 1129 724 306 32 36 chr6 71421608 71421831 -78095206 - B4A SINE B4 -65 227 1 1 1129 378 107 0 0 chr6 71421865 71421921 -78095116 + (CCCCCT)n Simple_repeat Simple_repeat 4 59 0 1 1129 680 203 15 38 chr6 71422114 71422247 -78094790 + B1_Mur3 SINE Alu 2 131 -18 1 1129 677 172 0 8 chr6 71422345 71422462 -78094575 + B1_Mur3 SINE Alu 2 117 -32 1 1129 2790 121 153 36 chr6 71422562 71423084 -78093953 + RMER4B LTR ERVK 1 583 -2 1 1129 438 196 106 53 chr6 71423086 71423199 -78093838 + MurERV4-int LTR ERVK 1 119 -5141 1 1129 483 192 0 29 chr6 71423199 71423301 -78093736 + B1_Mur1 SINE Alu 49 147 -2 1 1129 414 307 28 104 chr6 71424965 71425230 -78091807 - B4A SINE B4 -34 258 2 1 1129 252 273 81 0 chr6 71425254 71425353 -78091684 - L1MEc LINE L1 -4857 1543 1437 1 1129 721 317 79 24 chr6 71425726 71426107 -78090930 - L1MEc LINE L1 -5639 761 360 1 1129 578 149 17 50 chr6 71426109 71426229 -78090808 + B3A SINE B2 2 117 -81 1 1129 567 241 51 0 chr6 71426682 71426819 -78090218 + RSINE1 SINE B4 14 157 -8 1 1129 350 297 71 76 chr6 71427037 71427248 -78089789 - MTEa LTR MaLR -169 210 1 1 1129 1099 43 50 0 chr6 71427328 71427468 -78089569 + B1_Mus2 SINE Alu 1 147 0 1 1129 288 280 128 56 chr6 71427567 71427692 -78089345 - B1_Mur1 SINE Alu -15 134 1 1 1129 1130 241 36 54 chr6 71428268 71428654 -78088383 - MT2A LTR ERVL -8 525 147 1 1129 440 250 51 7 chr6 71428893 71428920 -78088117 - MT2A LTR ERVL -390 143 1 1 1129 459 254 9 0 chr6 71428920 71429030 -78088007 - MTE2b LTR MaLR -268 111 1 1 1129 3097 44 0 230 chr6 71429065 71429631 -78087406 - RLTR10C LTR ERVK 0 436 1 1 1129 396 59 0 0 chr6 71430112 71430163 -78086874 + (TCC)n Simple_repeat Simple_repeat 2 52 0 1 1129 253 311 8 25 chr6 71430597 71430719 -78086318 + RMER10A LTR ERVL 130 249 -193 1 1129 470 190 0 0 chr6 71430720 71430799 -78086238 - B1_Mur4 SINE Alu -71 79 1 1 1129 421 318 113 28 chr6 71430812 71430868 -78086169 - Lx8 LINE L1 -450 7023 6954 1 1129 222 62 0 0 chr6 71430868 71430900 -78086137 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1129 421 318 113 28 chr6 71430900 71431125 -78085912 - Lx8 LINE L1 -520 6953 6719 1 1129 218 57 57 0 chr6 71431728 71431763 -78085274 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 1 1129 290 215 15 15 chr6 71431842 71431908 -78085129 - MLT1F2 LTR MaLR 0 560 495 1 1129 834 264 56 59 chr6 71431916 71432255 -78084782 - MTE2a LTR MaLR 0 419 57 1 1129 1193 157 23 9 chr6 71432255 71432473 -78084564 + URR1A DNA MER1_type 5 225 -1 1 1129 691 307 66 76 chr6 71432473 71432556 -78084481 - MTE2a LTR MaLR -337 82 1 1 1129 285 372 6 68 chr6 71432581 71432757 -78084280 - MLT1F2 LTR MaLR -99 461 297 1 1129 389 270 9 26 chr6 71432785 71432899 -78084138 + PB1D10 SINE Alu 5 116 -1 1 1129 823 197 71 113 chr6 71432903 71433212 -78083825 + L1M2 LINE L1 5494 5789 -508 1 1129 342 342 139 8 chr6 71433225 71433488 -78083549 - L1ME1 LINE L1 -340 5839 5527 1 1129 2340 160 49 12 chr6 71433488 71433894 -78083143 + MTC LTR MaLR 1 421 0 1 1129 342 342 139 8 chr6 71433894 71433996 -78083041 - L1ME1 LINE L1 -653 5526 5426 1 1129 30 27 0 0 chr6 71434033 71434070 -78082967 + AT_rich Low_complexity Low_complexity 1 37 0 1 141 293 175 49 37 chr6 71434080 71434429 -78082608 + (TTATA)n Simple_repeat Simple_repeat 1 352 0 1 1130 22 56 0 0 chr6 71434479 71434515 -78082522 + AT_rich Low_complexity Low_complexity 1 36 0 1 1130 771 263 26 16 chr6 71434515 71434708 -78082329 - B3A SINE B2 -2 196 2 1 1130 432 342 0 53 chr6 71434848 71435018 -78082019 + RSINE1 SINE B4 3 163 -2 1 1130 985 145 39 0 chr6 71435047 71435226 -78081811 + URR1B DNA MER1_type 40 225 0 1 1130 409 287 7 68 chr6 71436087 71436233 -78080804 + B1F1 SINE Alu 12 148 -1 1 1130 368 189 75 32 chr6 71436370 71436463 -78080574 + ID_B1 SINE B4 110 206 -18 1 1130 215 114 0 22 chr6 71436809 71436854 -78080183 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 1 1130 523 212 101 43 chr6 71436854 71436992 -78080045 - B1_Mur3 SINE Alu 0 149 4 1 1130 237 238 84 118 chr6 71436992 71437019 -78080018 - MT2B LTR ERVL -438 163 141 1 1130 625 185 34 0 chr6 71437336 71437455 -78079582 - B1_Mur3 SINE Alu -21 128 6 1 1130 357 301 301 4 chr6 71437467 71437730 -78079307 + HAL1 LINE L1 2040 2380 -127 1 1130 514 234 255 21 chr6 71437733 71437925 -78079112 + B4A SINE B4 8 244 -48 1 1130 594 0 0 0 chr6 71437925 71437991 -78079046 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1130 513 254 9 0 chr6 71438313 71438427 -78078610 - PB1D7 SINE Alu -5 115 1 1 1130 589 200 0 20 chr6 71438540 71438688 -78078349 + CT-rich Low_complexity Low_complexity 1 145 0 1 1130 578 161 138 0 chr6 71438715 71438845 -78078192 - B1_Mus1 SINE Alu 0 148 1 1 1130 198 269 90 0 chr6 71438846 71438913 -78078124 - MIRb SINE MIR -71 197 125 1 1130 1271 97 32 21 chr6 71439042 71439231 -78077806 + B2_Mm2 SINE B2 3 193 -2 1 1130 477 0 0 0 chr6 71439320 71439373 -78077664 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1130 269 233 0 0 chr6 71439375 71439435 -78077602 - B4A SINE B4 -16 276 217 1 1130 741 224 0 20 chr6 71439453 71439603 -78077434 - B1F2 SINE Alu -2 147 1 1 1130 368 198 37 12 chr6 71439612 71439694 -78077343 - B4A SINE B4 -71 221 138 1 1130 408 212 0 0 chr6 71439717 71439802 -78077235 - B4A SINE B4 -207 85 1 1 1130 1578 11 0 0 chr6 71439874 71440054 -78076983 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1130 231 114 0 0 chr6 71440241 71440276 -78076761 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1130 1037 247 46 92 chr6 71440276 71440602 -78076435 - MTEa LTR MaLR -67 312 2 1 1130 240 333 0 0 chr6 71440648 71440723 -78076314 - L1M5 LINE L1 -432 5692 5618 1 1130 775 151 84 6 chr6 71440970 71441137 -78075900 - Lx9 LINE L1 -1 7643 7464 1 1130 293 111 32 0 chr6 71441140 71441203 -78075834 + (TCTCTG)n Simple_repeat Simple_repeat 4 68 0 1 1130 5412 54 0 3 chr6 71441249 71441913 -78075124 + L1Md_F2 LINE L1 5918 6579 -3 1 1130 792 138 0 0 chr6 71441926 71442056 -78074981 + (TCTCCC)n Simple_repeat Simple_repeat 3 132 0 1 1130 447 106 0 0 chr6 71442661 71442727 -78074310 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1130 618 95 0 0 chr6 71442732 71442827 -78074210 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 1130 216 0 0 0 chr6 71443300 71443324 -78073713 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1130 1266 20 0 0 chr6 71443324 71443470 -78073567 - B1_Mus2 SINE Alu 0 147 2 1 1130 465 208 45 23 chr6 71443470 71443603 -78073434 + B1_Mur1 SINE Alu 14 149 0 1 1130 22 35 0 0 chr6 71444251 71444280 -78072757 + GC_rich Low_complexity Low_complexity 1 29 0 1 1130 182 37 37 0 chr6 71445962 71445989 -78071048 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 1 1130 771 273 8 89 chr6 71447115 71447352 -78069685 + ID_B1 SINE B4 7 224 0 1 1130 1431 75 0 83 chr6 71447828 71448033 -78069004 + B2_Mm2 SINE B2 2 189 -6 1 1130 268 200 0 0 chr6 71448851 71448891 -78068146 + ID4 SINE ID 2 41 -42 1 1130 1346 171 29 0 chr6 71449269 71449479 -78067558 - B3 SINE B2 0 216 1 1 1130 320 239 109 40 chr6 71449574 71449748 -78067289 - L2a LINE L2 -38 3388 3203 1 1130 29 28 0 0 chr6 71450203 71450239 -78066798 + AT_rich Low_complexity Low_complexity 1 36 0 1 1130 383 228 118 10 chr6 71450366 71450468 -78066569 - PB1D7 SINE Alu -2 118 6 1 1130 581 207 293 0 chr6 71450651 71450815 -78066222 - MTEb LTR MaLR 0 379 168 1 1130 538 342 6 13 chr6 71450859 71451016 -78066021 - RSINE1 SINE B4 -2 163 8 1 1130 285 200 0 0 chr6 71451072 71451122 -78065915 - RSINE1 SINE B4 -36 129 80 1 1130 875 193 0 0 chr6 71452376 71452521 -78064516 + B1_Mur4 SINE Alu 6 150 0 1 1130 246 301 0 27 chr6 71453670 71453745 -78063292 + ID4_ SINE ID 4 76 -7 1 1130 284 78 0 38 chr6 71453760 71453813 -78063224 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 1 1130 1235 56 0 7 chr6 71454541 71454686 -78062351 - B1_Mm SINE Alu -3 144 1 1 1130 423 304 162 7 chr6 71455400 71455536 -78061501 + RSINE1 SINE B4 3 159 -6 1 1130 28 29 0 0 chr6 71455538 71455573 -78061464 + AT_rich Low_complexity Low_complexity 1 35 0 1 1130 224 282 197 0 chr6 71456063 71456134 -78060903 - PB1D10 SINE Alu -29 88 4 1 1130 204 40 0 0 chr6 71456403 71456428 -78060609 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1130 465 308 0 0 chr6 71456434 71456541 -78060496 - B3A SINE B2 -23 175 69 1 1130 261 289 158 0 chr6 71456592 71456693 -78060344 + B1F2 SINE Alu 1 112 -5 1 1130 21 36 0 0 chr6 71456793 71456821 -78060216 + AT_rich Low_complexity Low_complexity 1 28 0 1 1130 245 255 0 0 chr6 71457186 71457237 -78059800 + B3A SINE B2 1 51 -147 1 1130 1507 74 11 0 chr6 71457575 71457765 -78059272 + B2_Mm1t SINE B2 2 193 0 1 1130 22 0 0 0 chr6 71460849 71460871 -78056166 + AT_rich Low_complexity Low_complexity 1 22 0 1 1130 6450 47 1 2 chr6 71461387 71462181 -78054856 - L1Md_F3 LINE L1 -62 6522 5765 1 1130 283 203 125 0 chr6 71462302 71462366 -78054671 - ID4_ SINE ID -10 73 2 1 1130 430 262 131 0 chr6 71462382 71462504 -78054533 - B1F SINE Alu -8 141 4 1 1130 317 276 187 48 chr6 71462582 71462898 -78054139 - L1MC4 LINE L1 -597 7445 7086 1 1130 384 22 0 0 chr6 71462921 71462966 -78054071 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1 1130 757 254 19 63 chr6 71462986 71463175 -78053862 + B3 SINE B2 1 183 -33 1 1130 228 35 0 0 chr6 71463175 71463204 -78053833 + (TAAG)n Simple_repeat Simple_repeat 4 32 0 1 1130 189 0 0 0 chr6 71463205 71463226 -78053811 + (CAGT)n Simple_repeat Simple_repeat 1 21 0 1 1130 757 254 19 63 chr6 71463226 71463240 -78053797 + B3 SINE B2 184 197 -19 1 1130 23 0 0 0 chr6 71463240 71463263 -78053774 + AT_rich Low_complexity Low_complexity 1 23 0 1 1130 236 297 97 19 chr6 71463269 71463372 -78053665 - L1MC4 LINE L1 -1040 7002 6892 1 1130 340 293 0 0 chr6 71463554 71463636 -78053401 - Tigger5 DNA MER2_type -1 2405 2324 1 1130 696 266 79 32 chr6 71463843 71464033 -78053004 + ID_B1 SINE B4 25 223 -1 1 1130 230 227 147 29 chr6 71464277 71464345 -78052692 - ID4 SINE ID -5 78 3 1 1130 227 189 0 0 chr6 71464354 71464391 -78052646 - PB1D10 SINE Alu -29 88 52 1 1130 3243 238 48 67 chr6 71464593 71464823 -78052214 - RCHARR1 DNA MER1_type 0 974 733 1 1130 1365 113 43 0 chr6 71464823 71465008 -78052029 + B2_Mm2 SINE B2 1 193 -2 1 1130 735 197 48 27 chr6 71465017 71465163 -78051874 + B1_Mur3 SINE Alu 1 149 0 1 1130 3243 238 48 67 chr6 71465163 71465877 -78051160 - RCHARR1 DNA MER1_type -242 732 38 1 1130 1484 75 5 11 chr6 71465969 71466159 -78050878 - B2_Mm1a SINE B2 -3 190 2 1 1130 188 343 0 0 chr6 71466493 71466560 -78050477 + L2c LINE L2 3291 3357 -30 1 1130 1184 198 10 10 chr6 71467205 71467414 -78049623 + B3 SINE B2 3 211 -5 1 1130 29 70 0 0 chr6 71467520 71467577 -78049460 + AT_rich Low_complexity Low_complexity 1 57 0 1 1130 444 307 28 7 chr6 71467616 71467757 -78049280 - RSINE1 SINE B4 -18 147 4 1 1130 933 42 8 0 chr6 71468125 71468245 -78048792 - B1_Mus2 SINE Alu 0 147 27 1 1130 218 171 0 0 chr6 71468395 71468430 -78048607 + ID4 SINE ID 2 36 -47 1 1130 180 0 0 0 chr6 71468432 71468452 -78048585 + (CG)n Simple_repeat Simple_repeat 2 21 0 1 1130 225 0 0 0 chr6 71468452 71468476 -78048561 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1130 578 137 11 0 chr6 71468617 71468712 -78048325 - RLTR31_Mm LTR ERVK -214 347 252 1 1130 505 304 134 40 chr6 71470158 71470411 -78046626 + B4A SINE B4 3 279 -13 1 1130 1701 193 40 35 chr6 71470424 71470794 -78046243 - ORR1D1 LTR MaLR -2 372 1 1 1130 207 0 0 0 chr6 71470862 71470885 -78046152 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1130 1004 209 6 32 chr6 71470964 71471192 -78045845 + B3A SINE B2 1 204 -12 1 1130 507 107 0 0 chr6 71471523 71471598 -78045439 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 1 1130 2016 118 48 6 chr6 71471603 71471919 -78045118 - L1_Mur2 LINE L1 -922 4955 4627 1 1130 2944 145 173 33 chr6 71471918 71472518 -78044519 + Lx4B LINE L1 6374 7057 -1 1 1130 1116 201 28 37 chr6 71472580 71472797 -78044240 + B3 SINE B2 2 216 0 1 1130 306 0 0 0 chr6 71472800 71472834 -78044203 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1130 797 200 30 0 chr6 71472844 71472979 -78044058 + B1_Mur1 SINE Alu 3 141 -8 1 1130 349 275 138 83 chr6 71473160 71473378 -78043659 - L1M5 LINE L1 -446 5794 5565 1 1130 603 177 102 0 chr6 71473380 71473527 -78043510 - Tigger7 DNA MER2_type -31 2460 2299 1 1130 299 264 0 0 chr6 71473557 71473629 -78043408 - Tigger7 DNA MER2_type -2082 409 338 1 1130 459 263 70 13 chr6 71473664 71473822 -78043215 - Lx8 LINE L1 -2 7471 7305 1 1130 554 206 229 98 chr6 71473829 71474065 -78042972 - Lx8 LINE L1 -331 7142 6876 1 1130 909 267 187 3 chr6 71474074 71474363 -78042674 - Tigger7 DNA MER2_type -2143 348 7 1 1130 615 204 26 0 chr6 71474544 71474657 -78042380 - PB1D10 SINE Alu -1 116 1 1 1130 401 194 32 8 chr6 71474665 71474790 -78042247 + CT-rich Low_complexity Low_complexity 6 133 0 1 1130 1418 0 6 0 chr6 71475130 71475292 -78041745 + (TTC)n Simple_repeat Simple_repeat 1 163 0 1 1130 881 300 73 25 chr6 71476005 71476514 -78040523 + L1_Mur3 LINE L1 4327 4859 -1021 1 1130 231 299 92 23 chr6 71476564 71476694 -78040343 - MLT1A LTR MaLR -232 142 4 1 1130 696 278 35 7 chr6 71476712 71477002 -78040035 + L1M2 LINE L1 4472 4769 -1374 1 1130 479 79 79 0 chr6 71477007 71477083 -78039954 + MTC LTR MaLR 1 82 -339 1 1130 3927 188 95 122 chr6 71477093 71478536 -78038501 + RMER1A Other Other 2 1018 -12 1 1130 1947 175 17 33 chr6 71478539 71478900 -78038137 + MTC LTR MaLR 67 421 0 1 1130 681 284 71 4 chr6 71478900 71479140 -78037897 + L1M2 LINE L1 4770 5025 -1118 1 1130 728 122 8 34 chr6 71479140 71479259 -78037778 + B1_Mur3 SINE Alu 23 138 -11 1 1130 595 272 81 0 chr6 71479645 71479781 -78037256 + RSINE1 SINE B4 17 163 -2 1 1130 492 18 0 0 chr6 71480819 71480876 -78036161 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1130 387 0 0 0 chr6 71480876 71480918 -78036119 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1130 578 193 118 0 chr6 71480927 71481046 -78035991 - RSINE1 SINE B4 -31 134 2 1 1130 1061 146 81 13 chr6 71481202 71481478 -78035559 + RMER17C LTR ERVK 1 407 -3 1 1130 207 0 0 0 chr6 71481502 71481525 -78035512 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1130 848 192 0 27 chr6 71481671 71481821 -78035216 + B1_Mur1 SINE Alu 4 149 0 1 1130 860 241 6 12 chr6 71481827 71481991 -78035046 + RSINE1 SINE B4 3 165 0 1 1130 1407 171 19 0 chr6 71482057 71482267 -78034770 - B3 SINE B2 -1 215 2 1 1130 541 189 21 0 chr6 71483016 71483111 -78033926 + B1_Mur2 SINE Alu 43 139 -10 1 1130 192 200 0 0 chr6 71483111 71483151 -78033886 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1130 878 52 9 0 chr6 71483153 71483269 -78033768 + (GA)n Simple_repeat Simple_repeat 2 118 0 1 1130 281 266 168 11 chr6 71483277 71483372 -78033665 + PB1D7 SINE Alu 6 115 -5 1 1130 1303 106 67 0 chr6 71483505 71483685 -78033352 + B2_Mm2 SINE B2 2 193 -2 1 1130 316 300 48 62 chr6 71483685 71483912 -78033125 + L1_Mur3 LINE L1 1689 1912 -3968 1 1130 1958 198 77 10 chr6 71483915 71484303 -78032734 - MTD LTR MaLR -5 414 1 1 1130 3023 179 146 13 chr6 71484517 71485615 -78031422 + Lx5 LINE L1 5810 7041 -9 1 1130 518 276 21 7 chr6 71485630 71485772 -78031265 + L1_Mur3 LINE L1 3462 3605 -2275 1 1130 351 0 0 0 chr6 71485784 71485823 -78031214 + (CACAA)n Simple_repeat Simple_repeat 1 39 0 1 1130 589 322 85 62 chr6 71485887 71486367 -78030670 + RLTR11A2 LTR ERVK 5 495 -32 1 1130 1435 301 94 43 chr6 71486369 71486971 -78030066 + L1M3 LINE L1 3776 4424 -1716 1 1130 1810 170 93 37 chr6 71486971 71487325 -78029712 + ORR1D1 LTR MaLR 1 374 0 1 1130 1435 301 94 43 chr6 71487325 71487393 -78029644 + L1M3 LINE L1 4425 4490 -1650 1 1130 3215 161 38 0 chr6 71487393 71487897 -78029140 + RLTR28 LTR ERVL 1 523 -1 1 1130 1435 301 94 43 chr6 71487897 71488053 -78028984 + L1M3 LINE L1 4491 4645 -1495 1 1130 2374 172 132 22 chr6 71488053 71488147 -78028890 - RMER15 LTR ERVL 0 575 487 1 1130 1851 159 32 68 chr6 71488147 71488485 -78028552 + ORR1A3 LTR MaLR 1 326 0 1 1130 2374 172 132 22 chr6 71488485 71488852 -78028185 - RMER15 LTR ERVL -89 486 63 1 1130 941 329 60 10 chr6 71488872 71489357 -78027680 + L1M3 LINE L1 4664 5172 -971 1 1130 436 226 20 0 chr6 71489412 71489514 -78027523 + PB1D9 SINE Alu 17 120 0 1 1130 360 206 213 25 chr6 71489514 71489721 -78027316 + L1M3 LINE L1 5261 5489 -689 1 1130 485 336 15 5 chr6 71489735 71489981 -78027056 + L1MA5A LINE L1 5632 5880 -411 1 1130 1936 120 49 0 chr6 71490105 71490413 -78026624 - RLTR28 LTR ERVL -201 323 1 1 1130 585 0 0 0 chr6 71490429 71490494 -78026543 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 1130 1188 206 9 0 chr6 71490672 71490886 -78026151 - B3 SINE B2 0 216 1 1 1130 444 51 0 0 chr6 71491240 71491299 -78025738 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1130 2141 150 8 19 chr6 71491940 71492301 -78024736 - RLTR15 LTR ERVK 0 359 3 1 1130 1276 41 0 7 chr6 71494785 71494933 -78022104 - B1_Mus1 SINE Alu 0 148 2 1 1130 338 259 47 0 chr6 71495023 71495108 -78021929 + MER5A1 DNA MER1_type 78 166 0 1 1130 1166 35 0 0 chr6 71495931 71496072 -78020965 + B1_Mm SINE Alu 7 147 0 1 1130 3187 25 79 5 chr6 71496134 71496503 -78020534 + MTA_Mm LTR MaLR 1 396 0 1 1130 44 56 0 0 chr6 71496881 71496953 -78020084 + AT_rich Low_complexity Low_complexity 1 72 0 1 1130 608 200 365 22 chr6 71497034 71497346 -78019691 + MTD LTR MaLR 1 419 0 1 1130 219 316 171 0 chr6 71497348 71497424 -78019613 - PB1D10 SINE Alu -28 89 1 1 1130 300 311 50 75 chr6 71497712 71497872 -78019165 + MER57C2 LTR ERV1 279 434 0 1 1130 356 329 41 92 chr6 71497925 71498397 -78018640 - L1MC5 LINE L1 -786 7256 6813 1 1130 366 328 25 35 chr6 71498398 71498597 -78018440 + L1MEg LINE L1 388 584 -5500 1 1130 2667 207 63 8 chr6 71498673 71499203 -78017834 + Lx6 LINE L1 6901 7448 -12 1 1130 23 0 0 0 chr6 71499243 71499266 -78017771 + AT_rich Low_complexity Low_complexity 1 23 0 1 1130 573 227 82 15 chr6 71499291 71499425 -78017612 + B3 SINE B2 63 205 -11 1 1130 22 70 0 0 chr6 71499431 71499474 -78017563 + AT_rich Low_complexity Low_complexity 1 43 0 1 1130 27 0 0 0 chr6 71499621 71499648 -78017389 + AT_rich Low_complexity Low_complexity 1 27 0 1 1130 204 97 0 0 chr6 71499682 71499713 -78017324 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1 1130 712 41 10 0 chr6 71499713 71499810 -78017227 - L1_Mus1 LINE L1 -2 6565 6468 1 1130 358 252 227 25 chr6 71499816 71499979 -78017058 - B3A SINE B2 0 198 3 1 1130 446 70 0 14 chr6 71500000 71500072 -78016965 + (TTTTG)n Simple_repeat Simple_repeat 2 72 0 1 1130 243 248 1 52 chr6 71500096 71500178 -78016859 - ID2 SINE ID -69 83 5 2 1130 912 278 99 21 chr6 71500773 71501195 -78015842 + L1MB5 LINE L1 5711 6165 -9 3 1130 24 0 0 0 chr6 71501234 71501258 -78015779 + AT_rich Low_complexity Low_complexity 1 24 0 4 1130 575 276 87 68 chr6 71501288 71501494 -78015543 - B4A SINE B4 0 292 83 5 1130 786 236 152 75 chr6 71501533 71501946 -78015091 - Charlie2b DNA MER1_type -548 2234 1790 6 1130 276 345 45 0 chr6 71502038 71502148 -78014889 - Charlie2b DNA MER1_type -2638 144 30 6 1130 375 137 201 127 chr6 71502486 71502620 -78014417 - B2_Mm2 SINE B2 -5 190 47 7 1130 1390 80 11 6 chr6 71502676 71502852 -78014185 - B2_Mm1t SINE B2 -14 179 3 8 1130 448 81 159 5 chr6 71502873 71502973 -78014064 - B2_Mm2 SINE B2 -14 181 47 9 1130 923 81 8 0 chr6 71502986 71503109 -78013928 - B2_Mm1t SINE B2 -14 179 56 1 1130 649 270 50 87 chr6 71503462 71503681 -78013356 + ID_B1 SINE B4 3 213 -11 1 1130 1288 226 64 19 chr6 71503747 71504059 -78012978 - Lx8 LINE L1 -955 6518 6193 1 1130 216 97 0 0 chr6 71505152 71505183 -78011854 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1130 1175 82 7 0 chr6 71505183 71505330 -78011707 - B1_Mus1 SINE Alu 0 148 1 1 1130 4707 142 64 44 chr6 71505331 71506195 -78010842 - RMER19B LTR ERVK -19 883 3 1 1130 237 108 0 0 chr6 71506227 71506264 -78010773 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1130 291 284 0 57 chr6 71506597 71506697 -78010340 + ID4 SINE ID 10 104 -48 1 1130 1093 112 0 0 chr6 71506787 71506930 -78010107 + B1_Mus1 SINE Alu 1 143 -5 1 1130 735 232 96 18 chr6 71507044 71507211 -78009826 + B3A SINE B2 1 180 -18 1 1130 879 173 11 30 chr6 71507438 71507635 -78009402 - B3 SINE B2 -2 193 7 2 1130 210 323 49 63 chr6 71507912 71507994 -78009043 - ID_B1 SINE B4 -6 218 91 2 1130 232 296 0 0 chr6 71507994 71508048 -78008989 - B1F SINE Alu -92 57 4 2 1130 697 299 134 27 chr6 71508061 71508611 -78008426 + L1M3 LINE L1 2145 2753 -3387 2 1130 497 312 110 29 chr6 71508623 71508933 -78008104 + L1M3 LINE L1 3478 3812 -2331 2 1130 384 279 13 0 chr6 71509128 71509207 -78007830 - PB1D10 SINE Alu -31 86 7 2 1130 306 0 0 0 chr6 71510665 71510699 -78006338 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1130 470 243 101 27 chr6 71510707 71510855 -78006182 - B3A SINE B2 -39 159 1 2 1130 359 306 88 35 chr6 71511417 71511630 -78005407 + L2b LINE L2 2934 3160 -266 2 1130 663 206 0 102 chr6 71511690 71511847 -78005190 - B1_Mm SINE Alu -6 141 1 2 1130 334 296 0 36 chr6 71511890 71511974 -78005063 - ID2 SINE ID 0 83 3 2 1130 300 53 0 0 chr6 71511974 71512012 -78005025 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1130 572 227 0 0 chr6 71512013 71512110 -78004927 - PB1D9 SINE Alu -18 102 6 3 1130 23 0 0 0 chr6 71512354 71512377 -78004660 + AT_rich Low_complexity Low_complexity 1 23 0 3 1130 1020 227 43 19 chr6 71512381 71512592 -78004445 - B3 SINE B2 0 216 1 3 1130 425 228 197 20 chr6 71512593 71512745 -78004292 - B3A SINE B2 -4 194 10 3 1130 225 270 55 22 chr6 71513051 71513142 -78003895 - Charlie25 DNA MER1_type -1590 934 841 3 1130 795 206 0 0 chr6 71513231 71513401 -78003636 + (TATG)n Simple_repeat Simple_repeat 3 172 0 3 1130 1056 142 47 6 chr6 71513402 71513572 -78003465 - B2_Mm2 SINE B2 -18 177 1 3 1130 339 238 0 0 chr6 71513583 71513646 -78003391 - PB1D10 SINE Alu -7 110 48 3 1130 22 56 0 0 chr6 71513880 71513916 -78003121 + AT_rich Low_complexity Low_complexity 1 36 0 3 1130 1703 26 16 0 chr6 71513924 71514113 -78002924 - B2_Mm1a SINE B2 -1 192 1 4 1130 1244 62 0 0 chr6 71514474 71514620 -78002417 + B1_Mm SINE Alu 2 147 0 4 1130 759 289 24 19 chr6 71514656 71514864 -78002173 - ID_B1 SINE B4 -15 209 1 4 1130 723 218 0 22 chr6 71514918 71515054 -78001983 + RSINE1 SINE B4 2 134 -31 4 1130 280 260 62 49 chr6 71515266 71515347 -78001690 + B1F2 SINE Alu 1 82 -67 4 1130 291 175 0 0 chr6 71515357 71515414 -78001623 + C-rich Low_complexity Low_complexity 5 61 0 4 1130 199 133 0 43 chr6 71515413 71515460 -78001577 + T-rich Low_complexity Low_complexity 2 46 0 4 1130 195 42 0 0 chr6 71515464 71515488 -78001549 + (CCTAT)n Simple_repeat Simple_repeat 5 28 0 4 1130 536 216 19 10 chr6 71515488 71515586 -78001451 - B1_Mur2 SINE Alu -43 106 7 4 1130 283 218 20 139 chr6 71515504 71515605 -78001432 - MT2B LTR ERVL -361 240 152 4 1130 899 185 7 0 chr6 71515836 71515982 -78001055 + B1_Mur2 SINE Alu 1 147 -2 5 1130 3010 20 68 31 chr6 71516772 71517124 -77999913 - RLTR10B2 LTR ERVK 0 365 1 5 1130 212 0 36 0 chr6 71517281 71517309 -77999728 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1130 736 182 0 81 chr6 71517310 71517459 -77999578 - B1_Mur4 SINE Alu -13 137 1 5 1130 483 115 149 0 chr6 71517504 71517591 -77999446 + PB1D9 SINE Alu 12 111 -9 5 1130 830 210 30 128 chr6 71517775 71518010 -77999027 - B3 SINE B2 0 216 5 5 1130 550 289 50 31 chr6 71518069 71518230 -77998807 - RSINE1 SINE B4 0 165 2 5 1130 383 0 21 0 chr6 71518478 71518525 -77998512 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1130 746 234 92 20 chr6 71519665 71519861 -77997176 + L1M3 LINE L1 5604 5813 -370 5 1130 1235 212 13 83 chr6 71519861 71520175 -77996862 + B4A SINE B4 1 292 0 5 1130 351 0 0 0 chr6 71520786 71520825 -77996212 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1130 283 346 0 0 chr6 71520987 71521068 -77995969 - ID4_ SINE ID -2 81 1 6 1130 419 293 56 69 chr6 71521080 71521399 -77995638 - L1MA7 LINE L1 -173 6118 5804 6 1130 226 217 204 61 chr6 71521416 71521514 -77995523 - MTEa LTR MaLR 0 379 268 6 1130 433 269 30 15 chr6 71521747 71521879 -77995158 - L1MA7 LINE L1 -516 5775 5642 6 1130 465 181 0 0 chr6 71521879 71521973 -77995064 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 1130 307 173 19 0 chr6 71522082 71522134 -77994903 + MTC LTR MaLR 1 53 -368 6 1130 204 211 0 0 chr6 71522159 71522197 -77994840 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1130 452 335 55 93 chr6 71522211 71522282 -77994755 - B4A SINE B4 -10 282 158 6 1130 611 198 25 26 chr6 71522282 71522416 -77994621 - MTC LTR MaLR -13 408 268 6 1130 452 335 55 93 chr6 71522416 71522501 -77994536 - B4A SINE B4 -10 157 4 6 1130 327 97 161 0 chr6 71522654 71522716 -77994321 - MTC LTR MaLR -119 302 231 6 1130 293 244 69 11 chr6 71522688 71522775 -77994262 + B4A SINE B4 83 174 -118 6 1130 362 217 0 0 chr6 71522791 71522860 -77994177 + MTC LTR MaLR 1 69 -352 7 1130 2324 155 102 5 chr6 71523550 71523932 -77993105 - MTC LTR MaLR 0 421 3 7 1130 454 83 190 8 chr6 71524976 71525084 -77991953 - B2_Mm2 SINE B2 -2 193 47 7 1130 1338 80 51 0 chr6 71525132 71525308 -77991729 - B2_Mm1t SINE B2 -8 185 1 7 1130 375 255 101 28 chr6 71526114 71526223 -77990814 - B1F SINE Alu 0 149 33 7 1130 540 144 39 0 chr6 71526726 71526830 -77990207 + Lx4A LINE L1 6944 7051 -7 7 1130 573 195 182 160 chr6 71526862 71527137 -77989900 - B4A SINE B4 -10 282 2 7 1130 2772 160 39 6 chr6 71528299 71528808 -77988229 - RLTR11A2 LTR ERVK 0 527 2 7 1130 242 372 0 0 chr6 71528919 71528997 -77988040 - ID4_ SINE ID -3 80 3 7 1130 410 181 98 49 chr6 71528998 71529120 -77987917 - ID_B1 SINE B4 -5 219 92 7 1130 308 284 33 22 chr6 71529040 71529130 -77987907 - PB1D10 SINE Alu -26 91 1 8 1130 338 266 110 0 chr6 71529228 71529337 -77987700 - PB1 SINE Alu -2 125 5 8 1130 225 191 368 0 chr6 71529393 71529461 -77987576 + PB1 SINE Alu 24 116 -11 8 1130 665 268 251 13 chr6 71530745 71531131 -77985906 - L1MC1 LINE L1 -246 6087 5610 8 1130 444 236 201 29 chr6 71531360 71531604 -77985433 - L1MC1 LINE L1 -772 5374 5089 8 1130 671 118 182 0 chr6 71531617 71531727 -77985310 + B3 SINE B2 1 130 -86 8 1130 417 186 0 0 chr6 71531781 71531851 -77985186 + BC1_Mm scRNA scRNA 1 70 -82 8 1130 214 312 0 13 chr6 71531859 71531937 -77985100 + (CA)n Simple_repeat Simple_repeat 2 78 0 8 1130 514 262 41 8 chr6 71532017 71532140 -77984897 - RSINE1 SINE B4 -36 129 3 8 1130 195 129 0 0 chr6 71532208 71532239 -77984798 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 8 1130 275 206 17 3 chr6 71532239 71532311 -77984726 - L1MC1 LINE L1 -1198 4948 4877 8 1130 204 254 17 17 chr6 71532314 71532374 -77984663 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 8 1130 241 256 63 13 chr6 71532514 71532593 -77984444 + MTEa LTR MaLR 290 372 -7 9 1130 710 194 30 0 chr6 71532926 71533060 -77983977 - B1_Mur1 SINE Alu -9 140 3 9 1130 507 280 19 0 chr6 71533071 71533228 -77983809 - L1MC1 LINE L1 -1439 4707 4548 8 1130 234 150 0 0 chr6 71533868 71533908 -77983129 + L1M4c LINE L1 1302 1341 -5043 9 1130 725 162 498 13 chr6 71533947 71534195 -77982842 - RLTR30 LTR ERV1 -11 368 1 9 1130 898 225 35 25 chr6 71534318 71534737 -77982300 + RMER20B LTR ERVK 1 603 -24 9 1130 318 346 113 5 chr6 71534745 71534957 -77982080 + L1M4c LINE L1 1555 1789 -4595 9 1130 300 215 85 41 chr6 71535010 71535095 -77981942 + PB1D9 SINE Alu 6 94 -26 9 1130 265 277 84 0 chr6 71535250 71535333 -77981704 - RSINE1 SINE B4 -8 157 68 9 1130 632 108 24 2 chr6 71535463 71535562 -77981475 + B1_Mus1 SINE Alu 3 103 -17 9 1130 910 144 57 57 chr6 71535692 71535869 -77981168 - B2_Mm2 SINE B2 -17 178 2 9 1130 344 178 151 0 chr6 71536106 71536179 -77980858 + PB1D9 SINE Alu 6 89 -31 9 1130 678 188 0 0 chr6 71536481 71536593 -77980444 - PB1D9 SINE Alu 0 120 9 1 1130 1676 241 48 21 chr6 71536650 71537066 -77979971 + MT2A LTR ERVL 1 547 -54 1 1130 1214 41 0 64 chr6 71537849 71537987 -77979050 + B1_Mus2 SINE Alu 2 138 -9 1 1130 252 0 0 0 chr6 71537987 71538015 -77979022 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1130 1214 41 0 64 chr6 71538015 71538032 -77979005 + B1_Mus2 SINE Alu 139 147 0 1 1130 216 235 126 69 chr6 71539998 71540085 -77976952 - PB1D10 SINE Alu -19 98 7 1 1130 675 250 52 21 chr6 71542955 71543147 -77973890 - B3A SINE B2 0 198 1 1 1130 297 0 0 0 chr6 71543565 71543598 -77973439 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1130 1228 49 0 14 chr6 71544742 71544887 -77972150 - B1_Mm SINE Alu -4 143 1 1 1130 697 254 24 85 chr6 71546084 71546295 -77970742 - B3A SINE B2 0 198 1 1 1130 349 19 57 0 chr6 71547480 71547533 -77969504 + (CCAA)n Simple_repeat Simple_repeat 2 57 0 1 1130 951 218 122 0 chr6 71547639 71547827 -77969210 - B3 SINE B2 -2 214 4 1 1130 21 0 0 0 chr6 71547841 71547862 -77969175 + AT_rich Low_complexity Low_complexity 1 21 0 1 1130 277 289 71 3 chr6 71547959 71548057 -77968980 + PB1 SINE Alu 2 108 -9 1 1130 497 159 391 27 chr6 71548290 71548400 -77968637 - B1_Mur4 SINE Alu 0 150 1 1 1130 603 0 0 0 chr6 71548805 71548872 -77968165 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1130 252 250 39 77 chr6 71552556 71552634 -77964403 + B3A SINE B2 2 76 -122 1 1130 597 187 102 22 chr6 71552937 71553074 -77963963 + B3 SINE B2 67 214 -2 1 1130 1479 50 28 0 chr6 71554889 71555070 -77961967 - B2_Mm1t SINE B2 -6 187 2 1 1130 1477 34 78 6 chr6 71555320 71555481 -77961556 + B2_Mm1a SINE B2 1 160 -33 1 1130 207 0 0 0 chr6 71555481 71555504 -77961533 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1130 1477 34 78 6 chr6 71555504 71555521 -77961516 + B2_Mm1a SINE B2 161 190 -3 1 1130 216 0 0 0 chr6 71555678 71555702 -77961335 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1130 1666 60 0 0 chr6 71556143 71556343 -77960694 - L1_Mus2 LINE L1 0 6566 6367 1 1130 766 286 46 15 chr6 71557047 71557242 -77959795 + ID_B1 SINE B4 2 202 -22 1 1130 1227 35 7 0 chr6 71558189 71558334 -77958703 + B1_Mm SINE Alu 1 146 -1 1 1130 189 74 0 0 chr6 71559710 71559737 -77957300 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1130 992 46 114 0 chr6 71559738 71559869 -77957168 - B1_Mus1 SINE Alu 0 148 3 1 1130 410 236 134 34 chr6 71560478 71560627 -77956410 - RSINE1 SINE B4 -1 164 1 1 1130 23 68 0 0 chr6 71562707 71562751 -77954286 + AT_rich Low_complexity Low_complexity 1 44 0 1 1130 725 159 222 22 chr6 71562772 71562952 -77954085 - B3 SINE B2 0 216 1 1 1130 375 73 0 0 chr6 71563180 71563235 -77953802 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1130 214 331 62 16 chr6 71565143 71565272 -77951765 + MIR3 SINE MIR 72 206 -2 1 1131 233 392 75 20 chr6 71565718 71565864 -77951173 + L2 LINE L2 2912 3065 -354 1 1131 441 0 0 0 chr6 71566385 71566434 -77950603 + (CAG)n Simple_repeat Simple_repeat 2 50 0 1 1131 555 237 46 5 chr6 71567618 71567758 -77949279 - 7SLRNA srpRNA srpRNA -150 164 17 1 1131 22 0 0 0 chr6 71570850 71570872 -77946165 + AT_rich Low_complexity Low_complexity 1 22 0 1 1131 628 136 36 9 chr6 71570872 71570983 -77946054 - PB1D9 SINE Alu -6 114 1 1 1131 717 179 74 17 chr6 71571656 71571832 -77945205 + B3A SINE B2 3 188 -10 1 1131 261 0 0 0 chr6 71572627 71572656 -77944381 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1131 851 322 75 79 chr6 71573706 71574289 -77942748 + MER82 DNA MER2_type 34 614 -39 1 1131 232 193 45 57 chr6 71575341 71575429 -77941608 - Lx8 LINE L1 -96 7377 7291 1 1131 1149 62 0 0 chr6 71576276 71576421 -77940616 + B1_Mus1 SINE Alu 2 146 -2 1 1131 539 66 13 0 chr6 71576425 71576501 -77940536 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 1 1131 548 288 155 18 chr6 71577317 71577536 -77939501 + B4A SINE B4 44 292 0 1 1131 340 305 78 7 chr6 71577782 71577924 -77939113 + RMER30 DNA MER1_type 8 159 -43 1 1131 350 25 88 12 chr6 71579419 71579499 -77937538 + (CAAAAA)n Simple_repeat Simple_repeat 6 91 0 1 1131 230 270 83 73 chr6 71579887 71579983 -77937054 - MamRep137 DNA TcMar? -163 281 185 1 1131 391 284 109 34 chr6 71584125 71584346 -77932691 + L1MEe LINE L1 1949 2166 -4034 1 1131 423 301 13 83 chr6 71585493 71585649 -77931388 + ID_B1 SINE B4 80 224 0 1 1131 31 0 0 24 chr6 71585798 71585819 -77931218 + AT_rich Low_complexity Low_complexity 1 21 0 1 1131 1178 75 0 0 chr6 71585819 71585965 -77931072 - B1_Mm SINE Alu 0 147 2 1 1131 31 0 0 24 chr6 71585965 71585985 -77931052 + AT_rich Low_complexity Low_complexity 1 20 0 1 1131 993 290 70 21 chr6 71586134 71586596 -77930441 - L1MB5 LINE L1 -89 6085 5599 1 1131 543 192 19 0 chr6 71586642 71586746 -77930291 + RSINE1 SINE B4 26 131 -34 1 1131 22 35 0 0 chr6 71586799 71586828 -77930209 + AT_rich Low_complexity Low_complexity 1 29 0 1 1131 564 257 10 40 chr6 71586842 71587064 -77929973 - RSINE1 SINE B4 -138 154 1 1 1131 472 367 71 34 chr6 71587074 71587424 -77929613 - LTR33 LTR ERVL -2 513 151 1 1131 787 282 34 0 chr6 71587925 71588131 -77928906 + B3 SINE B2 3 215 -1 1 1131 441 233 96 10 chr6 71588162 71588266 -77928771 + B3A SINE B2 2 114 -84 1 1131 274 302 137 40 chr6 71588218 71588342 -77928695 + B4A SINE B4 16 151 -141 1 1131 613 243 22 14 chr6 71588484 71588622 -77928415 - B1_Mur1 SINE Alu -8 141 3 1 1131 487 330 58 0 chr6 71588622 71588813 -77928224 - Lx8 LINE L1 -155 7318 7117 1 1131 1301 232 72 3 chr6 71589166 71589512 -77927525 + ORR1D2 LTR MaLR 1 370 0 1 1131 1091 56 7 53 chr6 71589556 71589707 -77927330 + B1_Mus1 SINE Alu 3 146 -2 1 1131 266 152 0 17 chr6 71589709 71589769 -77927268 + GA-rich Low_complexity Low_complexity 2 60 0 1 1131 196 213 16 16 chr6 71589813 71589875 -77927162 + GA-rich Low_complexity Low_complexity 4 65 0 1 1131 424 222 0 0 chr6 71589878 71589950 -77927087 + ID2 SINE ID 2 73 -10 1 1131 419 318 129 18 chr6 71590010 71590404 -77926633 + L1MEf LINE L1 1061 1498 -4702 1 1131 437 269 6 0 chr6 71590974 71591134 -77925903 + (TG)n Simple_repeat Simple_repeat 2 162 0 1 1131 248 140 10 61 chr6 71592483 71592582 -77924455 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 1131 1044 218 216 67 chr6 71592602 71593048 -77923989 + MT2B LTR ERVL 21 487 -6 1 1131 983 87 2 12 chr6 71593044 71593199 -77923838 + B1_Mus1 SINE Alu 6 150 0 1 1131 305 62 21 0 chr6 71593199 71593247 -77923790 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 1 1131 515 246 48 16 chr6 71593290 71593447 -77923590 - B3 SINE B2 -2 214 46 1 1131 333 212 15 0 chr6 71594118 71594184 -77922853 - ID2 SINE ID -15 68 2 1 1131 201 39 0 0 chr6 71594553 71594579 -77922458 + (TTG)n Simple_repeat Simple_repeat 3 28 0 1 1131 517 234 133 14 chr6 71595171 71595314 -77921723 - RSINE1 SINE B4 -2 163 4 1 1131 641 255 131 10 chr6 71595341 71595539 -77921498 + ID_B1 SINE B4 1 222 -2 1 1131 1079 217 288 13 chr6 71595763 71596169 -77920868 + MT2B LTR ERVL 66 547 -54 1 1131 277 82 41 0 chr6 71596176 71596225 -77920812 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1131 15375 43 1 2 chr6 71596254 71598940 -77918097 - L1Md_F2 LINE L1 -13 6569 3887 1 1131 234 128 26 0 chr6 71599084 71599123 -77917914 + MT2B LTR ERVL 537 576 -8 1 1131 26 50 0 0 chr6 71599132 71599172 -77917865 + AT_rich Low_complexity Low_complexity 1 40 0 1 1131 440 247 43 0 chr6 71599285 71599378 -77917659 - B4 SINE B4 -3 289 193 1 1131 1115 98 17 0 chr6 71599379 71599553 -77917484 + MYSERV6-int LTR ERVK 1853 2029 -6930 1 1131 811 279 4 49 chr6 71599553 71599710 -77917327 - RLTR19 LTR ERVK 0 496 346 1 1131 4115 171 53 69 chr6 71599710 71600265 -77916772 - RMER19B LTR ERVK 0 902 339 1 1131 1014 80 29 0 chr6 71600265 71600402 -77916635 + B1_Mus2 SINE Alu 1 141 -6 1 1131 4115 171 53 69 chr6 71600402 71600624 -77916413 - RMER19B LTR ERVK -564 338 134 1 1131 1137 88 0 0 chr6 71600624 71600772 -77916265 - B1_Mus1 SINE Alu 0 148 1 1 1131 4115 171 53 69 chr6 71600772 71600909 -77916128 - RMER19B LTR ERVK -769 133 1 1 1131 811 279 4 49 chr6 71600909 71600977 -77916060 - RLTR19 LTR ERVK -151 345 281 1 1131 1969 32 0 0 chr6 71600978 71601226 -77915811 + L1_Mus1 LINE L1 6254 6501 -66 1 1131 2463 56 6 3 chr6 71601232 71601554 -77915483 - IAPEY2_LTR LTR ERVK -3 354 32 1 1131 394 127 51 0 chr6 71601564 71601643 -77915394 + L1Md_F2 LINE L1 6500 6582 0 1 1131 22 56 0 0 chr6 71601814 71601850 -77915187 + AT_rich Low_complexity Low_complexity 1 36 0 1 1131 215 203 17 0 chr6 71601851 71601910 -77915127 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 1131 183 42 0 0 chr6 71602047 71602071 -77914966 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1131 2004 98 17 27 chr6 71602073 71602368 -77914669 - RLTR19 LTR ERVK -207 292 1 1 1131 469 114 0 0 chr6 71602368 71602438 -77914599 + MYSERV6-int LTR ERVK 2025 2094 -6865 1 1131 1153 88 0 0 chr6 71602460 71602608 -77914429 - B1_Mus1 SINE Alu 0 148 1 1 1131 406 113 0 0 chr6 71602608 71602670 -77914367 + MYSERV6-int LTR ERVK 2080 2141 -6818 1 1131 1059 84 18 6 chr6 71602669 71602836 -77914201 + MYSERV6-int LTR ERVK 4814 4982 -3977 1 1131 231 246 134 119 chr6 71602836 71602939 -77914098 + MT2B LTR ERVL 152 256 -345 1 1131 313 208 0 0 chr6 71602939 71602992 -77914045 + B1_Mur4 SINE Alu 1 53 -97 1 1131 275 205 0 20 chr6 71602980 71603044 -77913993 + PB1D9 SINE Alu 11 68 -81 1 1131 12479 123 33 38 chr6 71603198 71604856 -77912181 + MYSERV6-int LTR ERVK 6737 8429 -530 1 1131 968 70 78 0 chr6 71604856 71604984 -77912053 + B1_Mus1 SINE Alu 1 138 -10 1 1131 295 21 42 21 chr6 71604984 71605032 -77912005 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1131 12479 123 33 38 chr6 71605032 71605325 -77911712 + MYSERV6-int LTR ERVK 8430 8711 -248 1 1131 1152 48 0 20 chr6 71605325 71605475 -77911562 + B1_Mus1 SINE Alu 2 148 0 1 1131 12479 123 33 38 chr6 71605475 71605755 -77911282 + MYSERV6-int LTR ERVK 8712 8958 -1 1 1131 1457 174 243 21 chr6 71605756 71606131 -77910906 + RMER6B LTR ERVK 2 459 -2 1 1131 357 24 0 0 chr6 71606136 71606178 -77910859 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1131 257 292 89 32 chr6 71606430 71606554 -77910483 - B1F SINE Alu 0 149 19 2 1131 649 262 71 51 chr6 71606448 71606645 -77910392 - ID_B1 SINE B4 -20 204 4 2 1131 311 318 143 47 chr6 71606947 71607154 -77909883 + MLT1G3 LTR MaLR 125 336 -255 2 1131 315 318 8 160 chr6 71607231 71607362 -77909675 - B1F1 SINE Alu -38 111 1 2 1131 1183 81 12 0 chr6 71607639 71607812 -77909225 + (TTC)n Simple_repeat Simple_repeat 3 177 0 2 1131 1081 45 0 43 chr6 71607812 71607953 -77909084 - B1_Mus1 SINE Alu -12 136 2 2 1131 770 149 0 0 chr6 71608037 71608151 -77908886 - RSINE1 SINE B4 -43 122 9 2 1131 339 25 0 0 chr6 71609072 71609112 -77907925 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1131 617 246 97 0 chr6 71609116 71609250 -77907787 - B3 SINE B2 -69 147 1 2 1131 3179 175 29 83 chr6 71609950 71610749 -77906288 - Lx7 LINE L1 0 7696 6941 2 1131 1132 44 0 0 chr6 71610757 71610892 -77906145 - B1_Mus1 SINE Alu -12 136 2 2 1131 1395 71 5 5 chr6 71610896 71611081 -77905956 - B2_Mm2 SINE B2 -10 185 1 2 1131 1159 128 0 114 chr6 71611082 71611328 -77905709 - L1_Mur3 LINE L1 -584 5296 5079 2 1131 890 249 33 19 chr6 71611687 71611778 -77905259 + ID_B1 SINE B4 5 102 -122 2 1131 360 0 0 0 chr6 71611778 71611818 -77905219 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1131 890 249 33 19 chr6 71611818 71611939 -77905098 + ID_B1 SINE B4 103 219 -5 2 1131 234 65 0 0 chr6 71611946 71611977 -77905060 + MLT2B2 LTR ERVL 414 444 -118 2 1131 234 192 19 0 chr6 71612005 71612057 -77904980 + (TATG)n Simple_repeat Simple_repeat 4 56 0 2 1131 973 264 110 4 chr6 71612223 71612504 -77904533 - LTR69 LTR ERVL -7 581 271 2 1131 219 208 75 0 chr6 71612511 71612564 -77904473 + ID_B1 SINE B4 84 140 -84 2 1131 1209 83 0 0 chr6 71612976 71613301 -77903736 + (TG)n Simple_repeat Simple_repeat 1 325 0 2 1131 255 61 0 0 chr6 71613562 71613595 -77903442 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 2 1131 1178 82 0 0 chr6 71613596 71613742 -77903295 - B1_Mus2 SINE Alu 0 147 2 2 1131 971 24 113 0 chr6 71614322 71614446 -77902591 - L1Md_F2 LINE L1 -13 6569 6432 2 1131 382 337 27 11 chr6 71615116 71615302 -77901735 - RMER15 LTR ERVL -16 559 371 2 1131 488 282 71 112 chr6 71615669 71615821 -77901216 + B3A SINE B2 8 160 -38 2 1131 477 0 0 0 chr6 71615821 71615874 -77901163 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1131 324 0 0 0 chr6 71615874 71615909 -77901128 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1131 216 282 71 112 chr6 71615909 71615951 -77901086 + B2_Mm2 SINE B2 158 194 -1 2 1131 225 97 0 0 chr6 71615957 71615988 -77901049 + Lx LINE L1 369 399 -6258 2 1131 24953 135 52 7 chr6 71615986 71621793 -77895244 + Lx LINE L1 565 6647 -7 2 1131 335 209 106 26 chr6 71621817 71621930 -77895107 - Lx9 LINE L1 -13 7631 7510 2 1131 270 0 0 0 chr6 71621947 71621977 -77895060 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1131 243 0 0 0 chr6 71621977 71622003 -77895034 + (CG)n Simple_repeat Simple_repeat 2 28 0 2 1131 1296 121 11 0 chr6 71622332 71622522 -77894515 - B2_Mm1t SINE B2 0 193 2 2 1131 257 275 146 9 chr6 71623219 71623329 -77893708 - MIRb SINE MIR -89 179 55 2 1131 564 83 0 0 chr6 71623552 71623624 -77893413 + (GA)n Simple_repeat Simple_repeat 2 73 0 2 1131 714 105 0 0 chr6 71623624 71623729 -77893308 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 2 1131 673 209 112 24 chr6 71623938 71624144 -77892893 + MTD LTR MaLR 192 415 -4 2 1131 485 272 132 15 chr6 71624144 71624349 -77892688 + L1MC LINE L1 3543 3771 -2375 2 1131 465 326 0 8 chr6 71624385 71624515 -77892522 + ID_B1 SINE B4 85 213 -11 2 1131 1194 179 208 42 chr6 71625179 71625535 -77891502 + MTD LTR MaLR 3 417 -2 2 1131 1182 195 110 28 chr6 71626315 71626632 -77890405 + ORR1D1 LTR MaLR 3 345 -29 2 1131 193 28 111 0 chr6 71626632 71626668 -77890369 + (GTTTG)n Simple_repeat Simple_repeat 3 42 0 2 1131 1195 54 0 13 chr6 71626668 71626818 -77890219 - B1_Mus1 SINE Alu 0 148 1 2 1131 1532 57 0 20 chr6 71627057 71627254 -77889783 - B2_Mm2 SINE B2 -1 194 2 2 1131 378 107 0 0 chr6 71627361 71627417 -77889620 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 2 1131 892 240 71 0 chr6 71627418 71627614 -77889423 - ID_B1 SINE B4 -5 219 10 2 1131 285 29 0 0 chr6 71627687 71627721 -77889316 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1131 396 0 0 0 chr6 71628021 71628065 -77888972 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1131 250 280 105 21 chr6 71628122 71628217 -77888820 - L1M5 LINE L1 -323 5801 5699 2 1131 1002 241 44 135 chr6 71628412 71628819 -77888218 + ORR1D2 LTR MaLR 1 370 0 2 1131 283 254 0 0 chr6 71628828 71628899 -77888138 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1131 481 282 228 55 chr6 71628923 71629385 -77887652 + LTR41 LTR ERVL 3 679 -89 2 1131 300 53 0 0 chr6 71629385 71629423 -77887614 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 2 1131 1184 50 0 0 chr6 71629423 71629562 -77887475 - B1_Mm SINE Alu -8 139 1 2 1131 295 257 21 107 chr6 71629562 71629594 -77887443 + LTR41 LTR ERVL 680 701 -67 2 1131 330 240 93 0 chr6 71629594 71629669 -77887368 - ID4_ SINE ID 0 83 2 2 1131 295 257 21 107 chr6 71629669 71629734 -77887303 + LTR41 LTR ERVL 702 763 -5 2 1131 620 188 78 0 chr6 71629934 71630062 -77886975 - B3A SINE B2 -60 138 1 2 1131 691 284 56 47 chr6 71630451 71630772 -77886265 - RMER5 LTR ERV1 -7 527 204 2 1131 927 170 7 0 chr6 71630772 71630919 -77886118 + B1_Mus1 SINE Alu 1 148 0 2 1131 719 231 58 117 chr6 71630951 71631157 -77885880 + B3A SINE B2 1 194 -1 2 1131 371 179 12 49 chr6 71631210 71631292 -77885745 + B1_Mm SINE Alu 43 121 -26 2 1131 230 156 22 22 chr6 71631303 71631349 -77885688 - B1F SINE Alu -52 97 52 2 1131 336 247 11 22 chr6 71631794 71631885 -77885152 + ID_B1 SINE B4 105 194 -30 2 1131 1967 177 52 15 chr6 71631885 71632292 -77884745 - Lx7 LINE L1 -441 7255 6834 2 1131 456 165 13 2 chr6 71632556 71632641 -77884396 + B1F SINE Alu 61 146 -3 2 1131 714 242 62 6 chr6 71632648 71632827 -77884210 + ID_B1 SINE B4 15 203 -21 2 1131 780 130 129 8 chr6 71634001 71634133 -77882904 + B1_Mur4 SINE Alu 2 149 -1 2 1131 397 294 18 0 chr6 71634162 71634271 -77882766 - B3A SINE B2 -79 119 9 2 1131 245 318 0 12 chr6 71634347 71634433 -77882604 + CT-rich Low_complexity Low_complexity 1 85 0 2 1131 260 261 128 21 chr6 71634523 71634617 -77882420 - MLT1C LTR MaLR -322 145 42 2 1131 525 264 216 17 chr6 71635088 71635389 -77881648 - MLT1A0 LTR MaLR 0 365 5 2 1131 432 216 20 0 chr6 71635684 71635786 -77881251 - B1F SINE Alu -1 148 45 2 1131 515 222 35 49 chr6 71636052 71636194 -77880843 + B4A SINE B4 35 174 -118 2 1131 339 25 0 0 chr6 71636301 71636341 -77880696 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1131 243 0 0 0 chr6 71636341 71636367 -77880670 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1131 497 235 78 0 chr6 71637799 71637914 -77879123 + B3A SINE B2 53 176 -22 2 1131 434 228 132 16 chr6 71638008 71638137 -77878900 + B1F SINE Alu 1 144 -5 2 1131 506 181 9 0 chr6 71638255 71638360 -77878677 + (TA)n Simple_repeat Simple_repeat 2 107 0 2 1131 291 311 28 0 chr6 71638495 71638601 -77878436 - PB1D10 SINE Alu 0 117 9 2 1131 664 269 28 33 chr6 71638509 71638690 -77878347 - ID_B1 SINE B4 -43 181 2 2 1131 228 179 18 0 chr6 71639280 71639336 -77877701 - ID4_ SINE ID -24 59 3 2 1131 5008 44 7 0 chr6 71640058 71640649 -77876388 - L1_Mus1 LINE L1 0 6567 5973 2 1131 342 288 102 25 chr6 71640691 71640848 -77876189 + B4 SINE B4 3 171 -121 2 1131 7777 72 31 4 chr6 71640848 71641666 -77875371 + L1VL2 LINE L1 342 1190 -2425 2 1131 7363 23 0 8 chr6 71641666 71642495 -77874542 - RLTR13B2 LTR ERVK 0 822 1 2 1131 7777 76 12 18 chr6 71642495 71642532 -77874505 + L1VL2 LINE L1 1191 1226 -2389 2 1131 1315 97 27 0 chr6 71642532 71642718 -77874319 + B2_Mm1t SINE B2 2 192 -1 2 1131 7777 76 12 18 chr6 71642718 71643533 -77873504 + L1VL2 LINE L1 1227 2030 -1585 2 1131 2010 264 36 45 chr6 71643630 71644380 -77872657 - L1_Rod LINE L1 -1222 4625 3888 2 1131 641 24 24 0 chr6 71644380 71644462 -77872575 + (TTTC)n Simple_repeat Simple_repeat 2 85 0 2 1131 2010 264 36 45 chr6 71644462 71644547 -77872490 - L1_Rod LINE L1 -1960 3887 3799 2 1131 494 240 0 0 chr6 71644742 71644838 -77872199 + B4 SINE B4 103 198 -94 2 1131 198 71 0 0 chr6 71645125 71645153 -77871884 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2 1131 552 229 34 0 chr6 71645501 71645619 -77871418 - B1F SINE Alu -5 144 23 2 1131 444 37 0 0 chr6 71646050 71646104 -77870933 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1131 2590 174 24 22 chr6 71646474 71646969 -77870068 + RLTR19 LTR ERVK 1 496 -3 2 1131 308 223 105 11 chr6 71647093 71647188 -77869849 + MER82 DNA MER2_type 167 270 -383 2 1131 274 303 0 13 chr6 71647335 71647412 -77869625 + L1_Mur3 LINE L1 5498 5573 -307 2 1131 219 111 0 43 chr6 71647615 71647662 -77869375 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1131 863 244 36 0 chr6 71647748 71647941 -77869096 - B3 SINE B2 -13 203 4 2 1131 2478 157 50 2 chr6 71648498 71648900 -77868137 - MTC LTR MaLR 0 421 1 2 1131 441 334 72 47 chr6 71649040 71649115 -77867922 - L1ME1 LINE L1 0 6164 6124 2 1131 822 240 75 0 chr6 71649115 71649315 -77867722 + ID_B1 SINE B4 5 219 -5 2 1131 485 327 77 10 chr6 71649315 71649672 -77867365 - L1ME1 LINE L1 -41 6123 5753 2 1131 511 196 11 0 chr6 71649769 71649861 -77867176 - MTE2a LTR MaLR -67 312 220 2 1131 1821 188 31 6 chr6 71649868 71650226 -77866811 - ORR1D1 LTR MaLR 0 374 8 3 1131 522 238 68 153 chr6 71650211 71650459 -77866578 - MTE2a LTR MaLR -152 227 1 2 1131 317 296 17 17 chr6 71650467 71650603 -77866434 - L1MD LINE L1 -515 5727 5592 3 1131 1184 34 7 0 chr6 71650668 71650816 -77866221 + L1Md_A LINE L1 6434 6582 0 3 1131 285 242 146 54 chr6 71650816 71651021 -77866016 - L1ME1 LINE L1 -589 5590 5367 2 1131 438 156 20 68 chr6 71651037 71651158 -77865879 + ORR1C2 LTR MaLR 263 379 -5 3 1131 1093 67 0 0 chr6 71653151 71653285 -77863752 + B1_Mus2 SINE Alu 1 134 -13 3 1131 829 200 4 124 chr6 71653716 71653950 -77863087 - MT2A LTR ERVL -327 206 1 3 1131 237 304 97 9 chr6 71653950 71654063 -77862974 - RMER5 LTR ERV1 -379 155 33 3 1131 298 253 80 0 chr6 71654822 71654897 -77862140 - ID4_ SINE ID 0 83 3 3 1131 446 244 55 8 chr6 71654916 71655044 -77861993 - B1F SINE Alu -2 147 14 3 1131 212 119 68 0 chr6 71655220 71655279 -77861758 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1131 791 238 108 20 chr6 71655295 71655544 -77861493 - B4 SINE B4 -6 286 16 3 1131 477 252 8 8 chr6 71655641 71655761 -77861276 - PB1D7 SINE Alu 0 120 1 3 1131 357 289 158 22 chr6 71656012 71656196 -77860841 - MER74C LTR ERVL -232 228 20 3 1131 477 240 39 31 chr6 71656358 71656487 -77860550 - ID_B1 SINE B4 -11 213 84 3 1131 217 370 0 52 chr6 71656507 71656533 -77860504 - ID_B1 SINE B4 -64 160 88 3 1131 220 333 0 0 chr6 71656533 71656584 -77860453 - B1F2 SINE Alu -92 57 7 3 1131 337 274 10 0 chr6 71656858 71656960 -77860077 - MER96B DNA hAT -13 404 302 3 1131 243 167 157 60 chr6 71657161 71657244 -77859793 + RSINE1 SINE B4 32 122 -43 3 1131 369 0 0 0 chr6 71657244 71657285 -77859752 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1131 459 0 0 0 chr6 71657285 71657335 -77859702 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1131 21 36 0 0 chr6 71657935 71657963 -77859074 + GC_rich Low_complexity Low_complexity 1 28 0 3 1131 257 316 63 0 chr6 71661112 71661191 -77855846 - ID SINE ID -139 85 2 3 1131 218 250 0 0 chr6 71661567 71661623 -77855414 - ID2 SINE ID 0 83 28 3 1131 2233 123 9 0 chr6 71661700 71662024 -77855013 - ORR1A2 LTR MaLR 0 327 1 3 1131 263 312 151 34 chr6 71662060 71662206 -77854831 + ID_B1 SINE B4 1 163 -61 3 1131 685 210 0 35 chr6 71662259 71662402 -77854635 + RSINE1 SINE B4 2 139 -26 3 1131 268 245 303 64 chr6 71662444 71662553 -77854484 + RSINE1 SINE B4 2 136 -29 3 1131 547 160 165 16 chr6 71663330 71663457 -77853580 + B1_Mus1 SINE Alu 1 146 -2 3 1131 230 0 33 0 chr6 71663457 71663487 -77853550 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1131 1144 106 55 16 chr6 71663492 71663674 -77853363 + B2_Mm1t SINE B2 2 190 -3 3 1131 246 32 0 0 chr6 71663702 71663733 -77853304 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1131 616 215 44 0 chr6 71664116 71664251 -77852786 + B1_Mur1 SINE Alu 1 141 -8 3 1131 719 224 14 0 chr6 71664355 71664502 -77852535 + B1F SINE Alu 1 149 0 3 1131 894 166 57 0 chr6 71664601 71664776 -77852261 - B2_Mm2 SINE B2 -9 186 2 3 1131 209 298 18 0 chr6 71664904 71664961 -77852076 + L2b LINE L2 3297 3354 -21 3 1131 362 224 16 6 chr6 71665066 71665190 -77851847 - B3A SINE B2 -52 164 2 3 1131 730 255 132 14 chr6 71665190 71665395 -77851642 - B4 SINE B4 -60 232 2 3 1131 256 313 84 16 chr6 71665455 71665705 -77851332 - L1M5 LINE L1 -763 5383 5117 3 1131 463 250 53 40 chr6 71665771 71665921 -77851116 - B3A SINE B2 -46 152 1 3 1131 356 272 102 0 chr6 71666179 71666326 -77850711 - L1M5 LINE L1 -1306 4840 4679 3 1131 348 24 0 0 chr6 71666336 71666377 -77850660 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1131 555 225 0 0 chr6 71666443 71666785 -77850252 + (TAGTG)n Simple_repeat Simple_repeat 1 342 0 3 1131 471 254 53 0 chr6 71666801 71666915 -77850122 - B3A SINE B2 -39 159 40 3 1131 458 243 35 56 chr6 71666978 71667122 -77849915 - B1F SINE Alu -8 141 1 3 1131 264 327 43 17 chr6 71667349 71667464 -77849573 - L1MC LINE L1 -1986 4160 4043 3 1131 573 42 0 0 chr6 71667477 71667549 -77849488 + (TTCTC)n Simple_repeat Simple_repeat 1 72 0 3 1131 4386 102 20 0 chr6 71667549 71668157 -77848880 - Lx3A LINE L1 -20 6961 6342 3 1131 456 246 97 16 chr6 71668381 71668505 -77848532 + B1F SINE Alu 15 148 -1 3 1131 1189 106 0 50 chr6 71668506 71668685 -77848352 - Lx5 LINE L1 -173 6877 6708 3 1131 275 260 0 58 chr6 71668771 71668910 -77848127 + ORR1B1-int LTR MaLR 609 739 -770 3 1131 477 200 9 19 chr6 71668806 71668818 -77848219 + ID_B1 SINE B4 70 175 -49 3 1131 784 32 0 0 chr6 71668818 71668913 -77848124 + B1_Mm SINE Alu 1 95 -52 3 1131 281 24 49 0 chr6 71668923 71668964 -77848073 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1131 275 231 0 13 chr6 71669022 71669101 -77847936 + (CAAA)n Simple_repeat Simple_repeat 3 80 0 3 1131 401 283 108 0 chr6 71669384 71669504 -77847533 - RSINE1 SINE B4 -30 135 3 3 1131 210 143 29 0 chr6 71669532 71669567 -77847470 + CT-rich Low_complexity Low_complexity 4 39 0 3 1131 359 272 0 0 chr6 71669693 71669774 -77847263 - RSINE1 SINE B4 -75 90 10 3 1131 637 270 179 55 chr6 71669806 71670188 -77846849 - MLT1B LTR MaLR -2 388 1 3 1131 212 273 67 22 chr6 71670231 71670321 -77846716 + MER5A DNA MER1_type 13 106 -83 3 1131 269 258 75 0 chr6 71670801 71670894 -77846143 - Charlie1a DNA MER1_type -60 1395 1296 3 1131 607 285 0 0 chr6 71670894 71671024 -77846013 - ID_B1 SINE B4 -7 217 88 3 1131 577 244 6 60 chr6 71671063 71671229 -77845808 + RSINE1 SINE B4 8 164 -1 3 1131 575 248 323 9 chr6 71671342 71671543 -77845494 - Charlie1a DNA MER1_type -492 963 694 3 1131 513 251 235 0 chr6 71671543 71671728 -77845309 + B4A SINE B4 2 230 -62 3 1131 462 206 191 75 chr6 71671728 71671875 -77845162 + RSINE1 SINE B4 2 165 0 3 1131 255 125 0 0 chr6 71671877 71671917 -77845120 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1131 817 228 19 6 chr6 71672662 71672821 -77844216 + RSINE1 SINE B4 3 163 -2 3 1131 588 286 18 6 chr6 71674177 71674342 -77842695 + ID_B1 SINE B4 3 169 -55 3 1131 230 316 29 39 chr6 71674590 71674692 -77842345 + MIR3 SINE MIR 58 158 -50 3 1131 510 170 30 0 chr6 71674800 71674900 -77842137 + B4 SINE B4 2 104 -188 3 1131 580 218 52 89 chr6 71674894 71675085 -77841952 + B3A SINE B2 15 198 0 3 1131 713 309 14 68 chr6 71675097 71675319 -77841718 + B4 SINE B4 81 290 -2 3 1131 252 0 0 0 chr6 71675324 71675352 -77841685 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1131 4909 189 19 65 chr6 71675384 71676466 -77840571 - Lx7 LINE L1 -9 7687 6656 3 1131 203 349 138 0 chr6 71676743 71676852 -77840185 - MIRb SINE MIR -46 222 99 3 1131 431 267 66 25 chr6 71677338 71677534 -77839503 + MLT1C LTR MaLR 52 255 -212 3 1131 1016 239 159 70 chr6 71677822 71678137 -77838900 - MTE2a LTR MaLR -36 343 1 3 1131 391 331 60 1 chr6 71678750 71678903 -77838134 + MLT1C LTR MaLR 214 374 0 3 1131 706 292 5 9 chr6 71678952 71679170 -77837867 + ID_B1 SINE B4 1 217 -7 3 1131 309 292 76 38 chr6 71679229 71679322 -77837715 - B2_Mm2 SINE B2 -2 193 2 3 1131 322 264 33 11 chr6 71679322 71679414 -77837623 - B4A SINE B4 -197 95 2 3 1131 364 347 5 102 chr6 71679455 71679538 -77837499 - RMER30 DNA MER1_type -1 201 118 3 1131 800 92 0 8 chr6 71679538 71679658 -77837379 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 3 1131 364 347 5 102 chr6 71679658 71679670 -77837367 - RMER30 DNA MER1_type -85 117 107 3 1131 186 71 0 0 chr6 71679670 71679698 -77837339 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1131 1035 47 47 0 chr6 71679698 71679826 -77837211 - B1_Mm SINE Alu -13 134 1 3 1131 364 347 5 102 chr6 71679826 71679943 -77837094 - RMER30 DNA MER1_type -96 106 9 3 1131 1173 293 165 29 chr6 71679950 71680466 -77836571 - MER73 LTR ERVL -58 586 1 3 1131 471 304 44 12 chr6 71680840 71681000 -77836037 + ID_B1 SINE B4 60 224 0 3 1131 566 203 93 0 chr6 71681005 71681123 -77835914 + B1_Mur1 SINE Alu 1 129 -20 3 1131 269 300 0 28 chr6 71681400 71681472 -77835565 - ID4_ SINE ID -11 72 3 3 1131 419 229 104 0 chr6 71681482 71681578 -77835459 - PB1D10 SINE Alu -11 106 1 3 1131 994 228 0 15 chr6 71681594 71681799 -77835238 + B3 SINE B2 1 202 -14 3 1131 955 235 10 0 chr6 71681800 71682004 -77835033 + B3 SINE B2 1 206 -10 3 1131 23 0 0 0 chr6 71682030 71682053 -77834984 + AT_rich Low_complexity Low_complexity 1 23 0 3 1131 850 266 2 47 chr6 71682057 71682271 -77834766 - B3A SINE B2 -5 211 4 3 1131 320 292 26 87 chr6 71682313 71682435 -77834602 + L1MA4A LINE L1 5729 5848 -455 3 1131 1121 72 0 0 chr6 71682435 71682574 -77834463 + B1_Mus1 SINE Alu 1 139 -9 3 1131 199 0 65 0 chr6 71682574 71682605 -77834432 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1131 320 292 26 87 chr6 71682605 71682714 -77834323 + L1MA4A LINE L1 5849 5945 -355 3 1131 438 53 0 0 chr6 71682714 71682771 -77834266 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1131 276 297 33 89 chr6 71682771 71682840 -77834197 + L1MA4A LINE L1 5946 6012 -288 3 1131 694 249 6 11 chr6 71683742 71683893 -77833144 - ID_B1 SINE B4 -67 225 82 3 1131 439 212 267 17 chr6 71683944 71684064 -77832973 + B3 SINE B2 67 216 0 3 1131 488 224 224 0 chr6 71684106 71684253 -77832784 - B3A SINE B2 -18 180 1 3 1131 1252 81 35 0 chr6 71684340 71684513 -77832524 - B2_Mm1t SINE B2 0 193 15 3 1131 321 350 2 29 chr6 71684759 71684952 -77832085 + L1M5 LINE L1 5543 5731 -448 3 1131 414 0 0 0 chr6 71684991 71685037 -77832000 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1131 201 179 26 0 chr6 71685038 71685077 -77831960 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1131 181 283 67 0 chr6 71685249 71685309 -77831728 + L3 LINE CR1 4424 4487 -2 4 1131 186 173 91 55 chr6 71686051 71686106 -77830931 + L2c LINE L2 3277 3333 -54 4 1131 469 309 32 0 chr6 71686530 71686656 -77830381 - B1F1 SINE Alu -9 140 11 4 1131 261 0 0 0 chr6 71686692 71686721 -77830316 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 4 1131 308 217 0 80 chr6 71686734 71686809 -77830228 - ID4 SINE ID -11 72 4 4 1131 419 218 129 129 chr6 71686850 71687013 -77830024 + RSINE1 SINE B4 3 165 0 4 1131 396 125 0 0 chr6 71687713 71687777 -77829260 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1131 675 277 85 30 chr6 71687784 71687985 -77829052 - B4A SINE B4 0 292 81 4 1131 483 274 0 0 chr6 71688083 71688189 -77828848 + B1F SINE Alu 42 147 -2 4 1131 545 192 105 12 chr6 71688229 71688349 -77828688 - PB1D9 SINE Alu -17 130 10 4 1131 330 302 99 21 chr6 71688579 71688721 -77828316 - MIRm SINE MIR -123 153 1 4 1131 26 0 0 0 chr6 71689060 71689086 -77827951 + AT_rich Low_complexity Low_complexity 1 26 0 4 1131 311 297 27 0 chr6 71689091 71689165 -77827872 + ID4_ SINE ID 7 82 -1 4 1131 511 167 0 35 chr6 71689393 71689480 -77827557 + B1_Mur2 SINE Alu 60 143 -6 4 1131 366 185 0 0 chr6 71690097 71690178 -77826859 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 1131 479 277 14 55 chr6 71690232 71690377 -77826660 + ID_B1 SINE B4 86 224 0 4 1131 215 171 0 0 chr6 71690420 71690455 -77826582 - B3A SINE B2 -162 36 2 4 1131 403 253 58 0 chr6 71690690 71690777 -77826260 + B3A SINE B2 2 93 -105 4 1131 342 196 33 74 chr6 71691422 71691543 -77825494 - RMER17A LTR ERVK -293 458 343 4 1131 498 287 36 7 chr6 71691539 71691676 -77825361 + RSINE1 SINE B4 9 149 -16 4 1131 260 232 24 8 chr6 71691718 71691844 -77825193 + (TA)n Simple_repeat Simple_repeat 2 129 0 4 1131 975 208 43 19 chr6 71691892 71692103 -77824934 + ID_B1 SINE B4 2 217 -7 4 1131 262 309 12 24 chr6 71692154 71692237 -77824800 - ID4_ SINE ID -1 82 1 4 1131 885 236 49 12 chr6 71692536 71692781 -77824256 - L1MB2 LINE L1 -246 5925 5672 4 1131 204 40 0 0 chr6 71692824 71692849 -77824188 + (ATG)n Simple_repeat Simple_repeat 1 25 0 4 1131 468 242 11 0 chr6 71692854 71692949 -77824088 - PB1D10 SINE Alu -21 96 1 4 1131 789 68 0 0 chr6 71693605 71693722 -77823315 + (TG)n Simple_repeat Simple_repeat 2 118 0 4 1131 186 43 0 0 chr6 71693742 71693765 -77823272 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 4 1131 339 280 0 0 chr6 71693768 71693843 -77823194 - ID4_ SINE ID -7 76 2 4 1131 257 318 109 45 chr6 71694002 71694269 -77822768 - L1ME1 LINE L1 -61 6118 5835 4 1131 269 200 129 0 chr6 71694428 71694498 -77822539 + MIRb SINE MIR 22 100 -168 4 1131 354 295 8 59 chr6 71695133 71695252 -77821785 + PB1D7 SINE Alu 7 119 -1 4 1131 23 54 0 0 chr6 71695367 71695404 -77821633 + AT_rich Low_complexity Low_complexity 1 37 0 4 1131 264 100 0 0 chr6 71695423 71695463 -77821574 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1131 378 179 15 15 chr6 71695477 71695545 -77821492 - RSINE1 SINE B4 -13 152 85 4 1131 539 292 16 22 chr6 71695547 71695722 -77821315 - B4 SINE B4 -50 174 3 4 1131 277 309 154 7 chr6 71695871 71696056 -77820981 - MIRb SINE MIR -48 220 9 4 1131 210 71 0 0 chr6 71696287 71696315 -77820722 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 4 1132 466 281 14 143 chr6 71696866 71696901 -77820136 - B2_Mm2 SINE B2 -7 188 167 4 1132 351 0 0 0 chr6 71696901 71696940 -77820097 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1132 768 260 28 13 chr6 71696940 71697120 -77819917 - B3A SINE B2 -23 175 1 4 1132 270 337 88 56 chr6 71697189 71697420 -77819617 + MIRb SINE MIR 1 241 -35 4 1132 432 217 0 0 chr6 71698120 71698263 -77818774 + (CA)n Simple_repeat Simple_repeat 2 144 0 4 1132 780 264 67 4 chr6 71698323 71698593 -77818444 + L1MA4 LINE L1 5557 5843 -457 4 1132 390 322 169 16 chr6 71698687 71698936 -77818101 - L1ME1 LINE L1 -52 6127 5841 4 1132 216 319 84 50 chr6 71699143 71699174 -77817863 + B4 SINE B4 60 92 -200 4 1132 372 43 0 0 chr6 71699174 71699220 -77817817 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1132 216 319 84 50 chr6 71699220 71699307 -77817730 + B4 SINE B4 93 182 -110 4 1132 438 181 33 125 chr6 71699224 71699318 -77817719 + PB1D7 SINE Alu 12 107 -13 4 1132 180 0 0 0 chr6 71699318 71699338 -77817699 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 1132 438 181 33 125 chr6 71699338 71699363 -77817674 + PB1D7 SINE Alu 108 120 0 4 1132 662 121 291 35 chr6 71699366 71699538 -77817499 + B3 SINE B2 1 216 0 4 1132 324 358 0 7 chr6 71699941 71700079 -77816958 + (TG)n Simple_repeat Simple_repeat 2 138 0 4 1132 340 278 197 114 chr6 71700079 71700257 -77816780 - B4A SINE B4 -4 288 97 4 1132 598 261 65 54 chr6 71700257 71700443 -77816594 - B3A SINE B2 -10 188 1 4 1132 340 278 197 114 chr6 71700443 71700528 -77816509 - B4A SINE B4 -196 96 3 4 1132 305 325 51 0 chr6 71700861 71700978 -77816059 + L1M5 LINE L1 5441 5563 -677 4 1132 311 217 33 0 chr6 71701309 71701369 -77815668 + PB1D10 SINE Alu 49 110 -7 4 1132 877 213 91 0 chr6 71701383 71701580 -77815457 + B3 SINE B2 1 215 -1 4 1132 1289 231 170 5 chr6 71701610 71701993 -77815044 + Lx8 LINE L1 6935 7380 -93 4 1132 586 193 28 0 chr6 71702070 71702179 -77814858 + PB1D10 SINE Alu 1 112 -5 4 1132 702 277 39 0 chr6 71702200 71702406 -77814631 + ID_B1 SINE B4 2 215 -9 4 1132 248 221 44 0 chr6 71702702 71702770 -77814267 + ID4 SINE ID 2 72 -11 4 1132 524 233 8 16 chr6 71703879 71704001 -77813036 - RSINE1 SINE B4 -3 162 42 4 1132 506 296 0 27 chr6 71704018 71704167 -77812870 - B1F SINE Alu -3 146 2 4 1132 414 280 65 53 chr6 71704199 71704413 -77812624 + HAL1-2a_MD LINE L1 2346 2519 -505 4 1132 248 268 71 95 chr6 71704554 71704723 -77812314 + MIR SINE MIR 8 172 -36 4 1132 234 0 0 0 chr6 71704760 71704786 -77812251 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1132 599 213 80 7 chr6 71705142 71705279 -77811758 + B1_Mur1 SINE Alu 2 148 -1 4 1132 892 208 0 19 chr6 71705287 71705449 -77811588 + RSINE1 SINE B4 3 161 -4 4 1132 312 320 0 10 chr6 71705478 71705582 -77811455 + PB1D10 SINE Alu 4 106 -11 4 1132 225 0 0 0 chr6 71705767 71705792 -77811245 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1132 181 220 117 17 chr6 71706844 71706904 -77810133 + L2c LINE L2 3287 3352 -35 4 1132 260 289 48 0 chr6 71707425 71707508 -77809529 - MamRep605 Unknown Unknown -222 654 568 4 1132 518 194 106 23 chr6 71707803 71707935 -77809102 + B2_Mm2 SINE B2 1 143 -52 4 1132 297 89 0 0 chr6 71707948 71707993 -77809044 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1132 467 221 43 86 chr6 71708076 71708239 -77808798 - MTD LTR MaLR -31 388 233 4 1132 838 216 35 44 chr6 71708260 71708463 -77808574 - MTD LTR MaLR -149 270 70 4 1132 1343 244 132 45 chr6 71708469 71709000 -77808037 - Lx6 LINE L1 0 7460 6506 4 1132 966 259 96 1 chr6 71709033 71709346 -77807691 - Lx6 LINE L1 -687 6363 6000 4 1132 297 0 0 0 chr6 71709735 71709768 -77807269 + (TTTTA)n Simple_repeat Simple_repeat 5 37 0 4 1132 1052 193 26 5 chr6 71709770 71709963 -77807074 - B3 SINE B2 -18 198 2 4 1132 291 277 151 0 chr6 71710102 71710221 -77806816 - MLT1E2 LTR MaLR -3 624 488 4 1132 214 109 43 72 chr6 71710518 71710587 -77806450 + (TTAA)n Simple_repeat Simple_repeat 4 70 0 4 1132 412 253 9 26 chr6 71710860 71710986 -77806051 - PB1D10 SINE Alu -1 148 27 4 1132 558 153 8 92 chr6 71711842 71711972 -77805065 + PB1D9 SINE Alu 2 120 0 4 1132 693 209 12 84 chr6 71712086 71712253 -77804784 - RSINE1 SINE B4 0 165 11 4 1132 250 342 0 0 chr6 71712253 71712329 -77804708 - PB1D10 SINE Alu -26 91 16 4 1132 591 253 105 68 chr6 71712532 71712723 -77804314 - B3A SINE B2 0 198 1 4 1132 486 316 26 0 chr6 71712789 71712906 -77804131 + ID_B1 SINE B4 95 214 -10 4 1132 871 149 28 0 chr6 71713551 71713692 -77803345 - B1_Mur2 SINE Alu -4 145 1 4 1132 769 307 51 141 chr6 71713722 71714211 -77802826 - MLT1E2 LTR MaLR -2 652 59 4 1132 552 15 0 0 chr6 71714530 71714595 -77802442 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1132 423 119 0 0 chr6 71714595 71714661 -77802376 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1132 420 241 0 24 chr6 71714821 71714906 -77802131 + ID4 SINE ID 1 83 0 4 1132 550 68 59 17 chr6 71714907 71715026 -77802011 + (GGGA)n Simple_repeat Simple_repeat 4 127 0 4 1132 540 30 0 0 chr6 71715614 71715680 -77801357 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1132 683 304 33 6 chr6 71715680 71715862 -77801175 - MER58A DNA MER1_type -25 199 13 4 1132 585 294 29 24 chr6 71716939 71717148 -77799889 + MTD LTR MaLR 1 210 -209 4 1132 654 130 72 7 chr6 71717148 71717287 -77799750 + RMER17B LTR ERVK 312 459 -499 4 1132 435 196 226 89 chr6 71717263 71717289 -77799748 + MTD LTR MaLR 190 207 -214 4 1132 462 36 0 0 chr6 71717289 71717345 -77799692 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 1132 435 196 226 89 chr6 71717345 71717486 -77799551 + MTD LTR MaLR 208 380 -41 4 1132 24 0 0 0 chr6 71718306 71718330 -77798707 + AT_rich Low_complexity Low_complexity 1 24 0 4 1132 698 216 116 74 chr6 71718351 71718408 -77798629 - ID_B1 SINE B4 -25 199 156 4 1132 2252 48 0 0 chr6 71718408 71718678 -77798359 - L1Md_A LINE L1 0 6582 6313 4 1132 698 216 116 74 chr6 71718678 71718810 -77798227 - ID_B1 SINE B4 -69 155 2 4 1132 542 218 27 9 chr6 71718814 71718925 -77798112 - PB1D10 SINE Alu 0 117 5 4 1132 446 247 11 0 chr6 71719080 71719169 -77797868 + PB1D9 SINE Alu 21 110 -10 5 1132 515 144 10 0 chr6 71719169 71719266 -77797771 + GA-rich Low_complexity Low_complexity 1 98 0 5 1132 376 295 37 34 chr6 71719499 71719682 -77797355 - B3A SINE B2 0 216 39 5 1132 316 345 23 23 chr6 71720927 71721102 -77795935 - MER74B LTR ERVL 0 622 448 5 1132 282 281 107 0 chr6 71721122 71721243 -77795794 - MER74B LTR ERVL -236 322 189 5 1132 908 193 5 86 chr6 71721341 71721551 -77795486 + B3A SINE B2 1 193 -5 5 1132 356 259 0 36 chr6 71721609 71721693 -77795344 - MER74B LTR ERVL -450 172 92 5 1132 325 319 128 24 chr6 71721681 71721845 -77795192 + MER91A DNA Tip100 5 185 -11 5 1132 212 86 29 0 chr6 71721937 71721972 -77795065 + (CCCCCT)n Simple_repeat Simple_repeat 3 38 0 5 1132 306 0 0 0 chr6 71722019 71722053 -77794984 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1132 913 293 52 26 chr6 71722078 71722133 -77794904 - B4 SINE B4 -14 278 217 5 1132 261 0 0 0 chr6 71722133 71722162 -77794875 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1132 913 293 52 26 chr6 71722162 71722376 -77794661 - B4 SINE B4 -76 216 3 5 1132 207 0 0 0 chr6 71722729 71722752 -77794285 + (GCCTG)n Simple_repeat Simple_repeat 2 24 0 5 1132 255 106 0 161 chr6 71723441 71723497 -77793540 + RMER4A LTR ERVK 1 47 -419 5 1132 623 112 381 8 chr6 71723497 71723623 -77793414 + B2_Mm2 SINE B2 2 174 -21 5 1132 953 125 433 51 chr6 71723618 71723930 -77793107 + RMER4A LTR ERVK 36 466 0 5 1132 477 76 0 0 chr6 71723937 71724003 -77793034 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1132 323 247 99 0 chr6 71724053 71724134 -77792903 - RSINE1 SINE B4 -68 97 9 5 1132 467 254 82 0 chr6 71724124 71724246 -77792791 - B1F SINE Alu -17 132 1 5 1132 521 284 17 81 chr6 71724246 71724276 -77792761 + ID_B1 SINE B4 66 216 -71 5 1132 786 208 0 0 chr6 71724276 71724406 -77792631 + B1_Mur1 SINE Alu 10 139 -10 5 1132 499 234 102 0 chr6 71724538 71724666 -77792371 - L1MA4 LINE L1 -11 6289 6149 5 1132 228 91 35 52 chr6 71724712 71724770 -77792267 + C-rich Low_complexity Low_complexity 2 58 0 5 1132 599 258 98 43 chr6 71724862 71725117 -77791920 - L1MA4 LINE L1 -332 5968 5700 5 1132 1008 283 51 53 chr6 71725128 71725192 -77791845 + L1M2 LINE L1 3879 3940 -2203 5 1132 880 219 48 19 chr6 71725192 71725401 -77791636 + B3 SINE B2 2 216 0 5 1132 1008 283 51 53 chr6 71725401 71725787 -77791250 + L1M2 LINE L1 3941 4328 -1815 5 1132 679 273 15 41 chr6 71725787 71725982 -77791055 + B4A SINE B4 1 190 -102 5 1132 240 248 172 55 chr6 71725973 71726101 -77790936 + B4A SINE B4 148 290 -2 5 1132 344 250 69 0 chr6 71726167 71726239 -77790798 - ID4_ SINE ID -5 78 2 5 1132 905 140 0 14 chr6 71726341 71726479 -77790558 + B1_Mus1 SINE Alu 1 136 -12 5 1132 353 269 118 0 chr6 71726520 71726613 -77790424 + PB1D10 SINE Alu 2 105 -12 5 1132 359 307 37 66 chr6 71726719 71726855 -77790182 + B1F2 SINE Alu 17 148 -1 5 1132 1237 48 0 0 chr6 71726862 71727009 -77790028 + B1_Mm SINE Alu 1 147 0 5 1132 33 66 0 0 chr6 71727009 71727070 -77789967 + AT_rich Low_complexity Low_complexity 1 61 0 5 1132 1020 135 37 6 chr6 71727285 71727449 -77789588 + B2_Mm2 SINE B2 4 172 -23 5 1132 807 248 87 5 chr6 71727496 71727691 -77789346 + ID_B1 SINE B4 2 212 -12 5 1132 528 253 165 0 chr6 71727738 71727929 -77789108 + B4A SINE B4 9 231 -61 5 1132 493 278 0 0 chr6 71727929 71728037 -77789000 + RSINE1 SINE B4 4 111 -54 5 1132 316 279 73 8 chr6 71728691 71728814 -77788223 + MTEb LTR MaLR 249 379 0 5 1132 1500 173 101 9 chr6 71729720 71730092 -77786945 - BGLII_B LTR ERVK 0 445 1 5 1132 1012 162 81 0 chr6 71730092 71730277 -77786760 + B3 SINE B2 11 210 -6 5 1132 677 171 186 47 chr6 71731110 71731282 -77785755 + B3A SINE B2 3 198 0 5 1132 258 105 0 0 chr6 71731499 71731537 -77785500 + (ATG)n Simple_repeat Simple_repeat 2 39 0 5 1132 645 115 77 34 chr6 71732149 71732242 -77784795 + B1_Mur1 SINE Alu 22 115 -34 5 1132 423 0 0 0 chr6 71732242 71732289 -77784748 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1132 645 115 77 34 chr6 71732289 71732312 -77784725 + B1_Mur1 SINE Alu 116 142 -7 5 1132 1094 53 0 0 chr6 71732567 71732698 -77784339 - B1_Mus2 SINE Alu -16 131 1 5 1132 23 0 0 0 chr6 71733251 71733274 -77783763 + AT_rich Low_complexity Low_complexity 1 23 0 5 1132 187 268 11 99 chr6 71733424 71733515 -77783522 + MER5A DNA MER1_type 89 171 -18 5 1132 251 146 18 0 chr6 71733649 71733704 -77783333 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1132 987 180 44 44 chr6 71733892 71734095 -77782942 + B3 SINE B2 13 215 -1 5 1132 549 275 70 51 chr6 71734186 71734210 -77782827 + RSINE1 SINE B4 6 119 -46 5 1132 230 286 127 67 chr6 71734210 71734296 -77782741 + B3A SINE B2 36 134 -64 5 1132 792 170 48 69 chr6 71734296 71734485 -77782552 + B2_Mm2 SINE B2 2 186 -9 5 1132 549 275 70 51 chr6 71734485 71734531 -77782506 + RSINE1 SINE B4 120 165 0 5 1132 230 286 127 67 chr6 71734531 71734548 -77782489 + B3A SINE B2 135 194 -4 5 1132 806 181 0 0 chr6 71735020 71735147 -77781890 + B1_Mus2 SINE Alu 15 141 -6 5 1132 1019 142 6 0 chr6 71735165 71735341 -77781696 + (GGAGA)n Simple_repeat Simple_repeat 2 178 0 5 1132 427 275 105 55 chr6 71735601 71735782 -77781255 - B3A SINE B2 -4 194 5 5 1132 1140 151 52 33 chr6 71735852 71736064 -77780973 + B3 SINE B2 1 216 0 5 1132 646 208 20 14 chr6 71736150 71736296 -77780741 + B1_Mur2 SINE Alu 2 148 -1 5 1132 356 289 11 0 chr6 71736360 71736450 -77780587 - MER3 DNA MER1_type -5 204 114 5 1132 318 106 0 0 chr6 71737549 71737596 -77779441 + (TTTCC)n Simple_repeat Simple_repeat 2 48 0 5 1132 596 256 16 0 chr6 71738792 71738913 -77778124 + ID_B1 SINE B4 94 216 -8 5 1132 962 197 120 21 chr6 71738923 71739115 -77777922 + B3 SINE B2 1 211 -5 5 1132 1036 104 0 0 chr6 71739145 71739279 -77777758 + B1_Mus1 SINE Alu 3 136 -12 5 1132 743 32 11 0 chr6 71739279 71739373 -77777664 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 5 1132 33 0 0 0 chr6 71739392 71739425 -77777612 + AT_rich Low_complexity Low_complexity 1 33 0 5 1132 794 240 102 5 chr6 71739824 71740021 -77777016 + ID_B1 SINE B4 3 218 -6 5 1132 721 255 28 0 chr6 71740028 71740173 -77776864 + B1_Mur1 SINE Alu 1 149 0 5 1132 289 252 108 54 chr6 71740600 71740730 -77776307 - Kanga1d DNA Tc2 -30 579 443 5 1132 1424 74 26 0 chr6 71740742 71740932 -77776105 + B2_Mm2 SINE B2 1 195 0 5 1132 660 219 0 61 chr6 71740973 71741104 -77775933 + B1_Mur2 SINE Alu 1 123 -26 5 1132 570 280 121 21 chr6 71741104 71741115 -77775922 + B4 SINE B4 86 233 -59 5 1132 497 76 13 0 chr6 71741115 71741194 -77775843 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 5 1132 570 280 121 21 chr6 71741194 71741239 -77775798 + B4 SINE B4 234 291 -1 5 1132 799 211 0 0 chr6 71741295 71741428 -77775609 + B1_Mur1 SINE Alu 1 133 -16 5 1132 938 163 7 0 chr6 71741504 71741651 -77775386 - B1_Mur4 SINE Alu -2 148 1 5 1132 356 327 9 28 chr6 71742408 71742515 -77774522 - B1F SINE Alu -39 110 6 5 1132 640 167 175 18 chr6 71742842 71743013 -77774024 - Lx9 LINE L1 0 7644 7447 5 1132 204 40 0 0 chr6 71743536 71743561 -77773476 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1132 249 256 176 55 chr6 71743562 71743653 -77773384 - Lx8 LINE L1 -143 7330 7229 5 1132 674 144 161 0 chr6 71743653 71743771 -77773266 + B3A SINE B2 3 139 -59 5 1132 411 73 0 0 chr6 71743778 71743833 -77773204 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1132 320 197 13 53 chr6 71743841 71743916 -77773121 - Lx8 LINE L1 -234 7239 7168 5 1132 234 81 0 0 chr6 71744264 71744301 -77772736 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1132 645 262 48 83 chr6 71744623 71744852 -77772185 + ID_B1 SINE B4 3 223 -1 5 1132 1391 40 0 11 chr6 71747444 71747623 -77769414 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 5 1132 685 272 67 26 chr6 71747637 71747905 -77769132 + B4A SINE B4 2 280 -12 5 1132 240 111 0 0 chr6 71747926 71747962 -77769075 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1132 533 157 9 0 chr6 71748165 71748181 -77768856 + polypurine Low_complexity Low_complexity 2 17 0 5 1132 1247 34 7 0 chr6 71748181 71748327 -77768710 + B1_Mus1 SINE Alu 2 148 0 5 1132 533 157 9 0 chr6 71748327 71748418 -77768619 + GA-rich Low_complexity Low_complexity 18 109 0 5 1132 236 235 0 14 chr6 71748402 71748471 -77768566 + G-rich Low_complexity Low_complexity 1 68 0 5 1132 782 284 194 17 chr6 71749369 71749730 -77767307 - MLT1F1 LTR MaLR -144 425 1 5 1132 459 248 46 0 chr6 71749838 71749947 -77767090 + MIRc SINE MIR 62 175 -93 5 1132 453 281 16 162 chr6 71750015 71750206 -77766831 - RSINE1 SINE B4 0 165 3 5 1132 237 283 50 0 chr6 71751054 71751153 -77765884 + MIR3 SINE MIR 82 185 -23 5 1132 389 182 0 22 chr6 71752367 71752457 -77764580 + (TATG)n Simple_repeat Simple_repeat 1 88 0 5 1132 325 284 12 0 chr6 71752654 71752735 -77764302 + ID4 SINE ID 1 82 -1 5 1132 1309 94 20 20 chr6 71752758 71752953 -77764084 + B2_Mm2 SINE B2 1 195 0 5 1132 439 200 111 37 chr6 71753276 71753411 -77763626 - B1F SINE Alu 0 149 5 5 1132 408 125 0 0 chr6 71755654 71755718 -77761319 + (CGTG)n Simple_repeat Simple_repeat 4 67 0 5 1132 311 263 26 26 chr6 71756215 71756293 -77760744 - ID4_ SINE ID -3 80 3 5 1132 680 238 12 60 chr6 71756442 71756624 -77760413 - ID_B1 SINE B4 -68 224 41 5 1132 613 268 8 116 chr6 71756895 71757136 -77759901 + ID_B1 SINE B4 1 215 -9 5 1132 1021 86 36 0 chr6 71760757 71760897 -77756140 + B1_Mus1 SINE Alu 2 146 -2 5 1132 948 133 0 20 chr6 71761071 71761217 -77755820 - B1_Mm SINE Alu 0 147 5 5 1132 483 229 194 44 chr6 71761566 71761726 -77755311 - B3A SINE B2 -14 184 1 5 1132 468 309 35 14 chr6 71761751 71761892 -77755145 + RSINE1 SINE B4 3 146 -19 6 1132 25 31 0 0 chr6 71761914 71761946 -77755091 + AT_rich Low_complexity Low_complexity 1 32 0 6 1132 634 286 83 5 chr6 71761957 71762161 -77754876 + ID_B1 SINE B4 5 224 0 6 1132 800 234 16 44 chr6 71762638 71762821 -77754216 + ID_B1 SINE B4 40 217 -7 6 1132 189 372 68 23 chr6 71763196 71763372 -77753665 + MIRb SINE MIR 70 253 -15 6 1132 28 0 0 0 chr6 71763951 71763979 -77753058 + AT_rich Low_complexity Low_complexity 1 28 0 6 1132 1203 36 0 0 chr6 71763987 71764125 -77752912 + B1_Mus1 SINE Alu 1 138 -10 6 1132 420 20 0 0 chr6 71764125 71764174 -77752863 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1132 302 291 34 107 chr6 71764344 71764433 -77752604 - AmnSINE1 SINE SINE -411 164 1 6 1132 436 169 34 57 chr6 71764433 71764521 -77752516 - 5S rRNA rRNA -35 86 1 6 1132 989 52 88 15 chr6 71764544 71764671 -77752366 + B1_Mm SINE Alu 1 139 -8 6 1132 207 0 0 0 chr6 71764671 71764694 -77752343 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1132 945 186 113 10 chr6 71764894 71765089 -77751948 + B3 SINE B2 2 216 0 6 1132 221 0 35 0 chr6 71765573 71765602 -77751435 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1132 305 329 13 0 chr6 71766488 71766567 -77750470 + PB1D10 SINE Alu 1 80 -37 6 1132 689 250 45 0 chr6 71766563 71766739 -77750298 + B3A SINE B2 15 198 0 6 1132 489 174 43 11 chr6 71766748 71766841 -77750196 + B1_Mur1 SINE Alu 49 144 -5 6 1132 875 255 22 9 chr6 71766926 71767146 -77749891 + B4A SINE B4 2 224 -68 6 1132 393 233 215 8 chr6 71767146 71767267 -77749770 + B3A SINE B2 2 147 -51 6 1132 294 294 60 105 chr6 71768253 71768295 -77748742 + ID_B1 SINE B4 50 150 -74 6 1132 307 240 12 85 chr6 71768295 71768377 -77748660 + PB1D10 SINE Alu 1 76 -41 6 1132 258 260 13 27 chr6 71768523 71768598 -77748439 - ID4_ SINE ID -5 78 5 6 1132 595 277 10 0 chr6 71769284 71769423 -77747614 + ID_B1 SINE B4 87 223 -1 6 1132 576 231 56 142 chr6 71769448 71769615 -77747422 + B3A SINE B2 2 151 -44 6 1132 324 0 0 0 chr6 71769615 71769651 -77747386 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1132 393 231 56 142 chr6 71769651 71769680 -77747357 + B2_Mm2 SINE B2 152 181 -14 6 1132 522 278 55 14 chr6 71769688 71769834 -77747203 + B4A SINE B4 2 153 -139 6 1132 581 251 177 0 chr6 71770357 71770532 -77746505 + B4 SINE B4 2 207 -85 6 1132 249 215 175 12 chr6 71770532 71770612 -77746425 + RLTR13D3 LTR ERVK 1 93 -1021 6 1132 815 94 154 15 chr6 71770881 71770997 -77746040 + B1_Mus1 SINE Alu 1 135 -13 6 1132 297 0 0 0 chr6 71770997 71771030 -77746007 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 1132 815 94 154 15 chr6 71771030 71771043 -77745994 + B1_Mus1 SINE Alu 136 148 0 6 1132 24 85 0 0 chr6 71771129 71771188 -77745849 + AT_rich Low_complexity Low_complexity 1 59 0 6 1132 374 245 83 77 chr6 71771450 71771618 -77745419 + RLTR13D3 LTR ERVK 946 1114 0 6 1132 204 167 0 0 chr6 71771762 71771810 -77745227 + A-rich Low_complexity Low_complexity 1 48 0 6 1132 296 315 73 9 chr6 71771815 71771924 -77745113 + PB1D10 SINE Alu 1 116 -1 6 1132 444 310 21 21 chr6 71771942 71772087 -77744950 + B1F2 SINE Alu 3 147 -2 6 1132 402 241 224 0 chr6 71772174 71772348 -77744689 + MIRb SINE MIR 5 217 -51 6 1132 394 230 24 28 chr6 71772415 71772537 -77744500 + PB1D10 SINE Alu 4 117 0 6 1132 200 184 0 0 chr6 71772543 71772581 -77744456 + (TGG)n Simple_repeat Simple_repeat 2 39 0 6 1132 1113 128 72 0 chr6 71772597 71772777 -77744260 + B2_Mm2 SINE B2 2 194 -1 6 1132 251 289 145 30 chr6 71772809 71773009 -77744028 + L1ME3A LINE L1 5859 6081 -92 6 1132 281 242 118 24 chr6 71773068 71773195 -77743842 - Charlie2b DNA MER1_type -269 2513 2375 6 1132 241 310 24 12 chr6 71773368 71773453 -77743584 - MIRm SINE MIR -121 155 70 6 1132 271 292 0 0 chr6 71773919 71773991 -77743046 - RSINE1 SINE B4 -4 161 90 6 1132 539 140 198 17 chr6 71774053 71774065 -77742972 - B1_Mur3 SINE Alu -1 148 137 6 1132 234 0 0 0 chr6 71774065 71774091 -77742946 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1132 539 140 198 17 chr6 71774091 71774194 -77742843 - B1_Mur3 SINE Alu -13 136 12 6 1132 306 282 44 35 chr6 71774228 71774342 -77742695 - PB1 SINE Alu -7 120 6 6 1132 351 229 24 0 chr6 71774573 71774656 -77742381 - Charlie1b DNA MER1_type -46 477 393 6 1132 1326 96 21 5 chr6 71774661 71774850 -77742187 + B2_Mm2 SINE B2 1 192 -3 6 1132 872 262 35 13 chr6 71774856 71775084 -77741953 - MLT1D LTR MaLR 0 505 273 6 1132 252 0 0 0 chr6 71775087 71775115 -77741922 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 6 1132 756 95 27 137 chr6 71775135 71775281 -77741756 - B2_Mm2 SINE B2 -65 130 1 6 1132 264 262 16 0 chr6 71775403 71775464 -77741573 - tRNA-Ala-GCY_ tRNA tRNA -8 67 6 6 1132 560 230 16 8 chr6 71775491 71775618 -77741419 - B1F2 SINE Alu -1 148 21 6 1132 415 279 17 35 chr6 71775825 71775940 -77741097 + PB1D7 SINE Alu 8 120 0 6 1132 468 319 92 20 chr6 71775969 71776164 -77740873 - Charlie1b DNA MER1_type -309 214 6 6 1132 746 124 12 116 chr6 71776362 71776526 -77740511 + B1_Mus1 SINE Alu 1 147 -1 6 1132 429 141 0 0 chr6 71776599 71776670 -77740367 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1132 304 173 0 0 chr6 71777058 71777110 -77739927 - B1F2 SINE Alu -93 56 5 6 1132 520 303 78 0 chr6 71777277 71777419 -77739618 - RSINE1 SINE B4 -4 161 9 6 1132 425 333 20 33 chr6 71777440 71777592 -77739445 - B3 SINE B2 -13 203 54 6 1132 264 158 0 0 chr6 71777627 71777665 -77739372 + B3 SINE B2 92 129 -87 6 1132 29 28 0 0 chr6 71777699 71777735 -77739302 + AT_rich Low_complexity Low_complexity 1 36 0 6 1132 1171 228 26 128 chr6 71777790 71778022 -77739015 - MTD LTR MaLR 0 419 212 6 1132 533 211 9 159 chr6 71778022 71778197 -77738840 - B3A SINE B2 -16 182 36 6 1132 1394 104 5 5 chr6 71778197 71778390 -77738647 - B2_Mm2 SINE B2 0 195 3 6 1132 533 211 9 159 chr6 71778390 71778428 -77738609 - B3A SINE B2 -163 35 1 6 1132 1171 228 26 128 chr6 71778428 71778538 -77738499 - MTD LTR MaLR -208 211 112 6 1132 1297 37 0 30 chr6 71778539 71778705 -77738332 + B2_Mm2 SINE B2 1 161 -34 6 1132 237 65 0 0 chr6 71778707 71778738 -77738299 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 1132 609 195 8 17 chr6 71778753 71778873 -77738164 - MTD LTR MaLR -300 119 1 6 1132 282 310 168 25 chr6 71778899 71779018 -77738019 - B4 SINE B4 -63 229 94 6 1132 240 35 0 0 chr6 71779023 71779052 -77737985 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 6 1132 490 92 92 0 chr6 71779069 71779156 -77737881 + L1_Mus2 LINE L1 6470 6564 -2 6 1132 634 247 25 101 chr6 71779176 71779374 -77737663 - B3 SINE B2 -6 210 28 6 1132 434 204 34 0 chr6 71779437 71779525 -77737512 - B3A SINE B2 -63 135 45 6 1132 1231 61 7 0 chr6 71779553 71779700 -77737337 - B1_Mus1 SINE Alu 0 148 1 6 1132 577 243 0 0 chr6 71779757 71779860 -77737177 - B3A SINE B2 -94 104 2 6 1132 215 185 36 18 chr6 71780195 71780250 -77736787 - PB1D7 SINE Alu -64 56 1 6 1132 799 169 41 27 chr6 71780358 71780504 -77736533 - B1_Mur2 SINE Alu 0 149 2 6 1132 243 0 0 0 chr6 71780694 71780721 -77736316 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1132 390 57 0 0 chr6 71780855 71780908 -77736129 + (A)n Simple_repeat Simple_repeat 1 53 0 6 1132 299 308 90 0 chr6 71780921 71781054 -77735983 - RSINE1 SINE B4 -18 147 3 6 1132 665 315 50 37 chr6 71782436 71782759 -77734278 - MLT1E3 LTR MaLR -1 623 297 6 1132 474 303 53 53 chr6 71783111 71783261 -77733776 - B3A SINE B2 -16 182 33 6 1132 411 73 0 0 chr6 71783493 71783548 -77733489 + (TTTC)n Simple_repeat Simple_repeat 4 58 0 6 1132 225 213 43 0 chr6 71783552 71783599 -77733438 + CT-rich Low_complexity Low_complexity 2 50 0 6 1132 714 63 8 59 chr6 71783605 71783723 -77733314 - BC1_Mm scRNA scRNA -40 112 1 6 1132 238 345 8 74 chr6 71784250 71784372 -77732665 + PB1D9 SINE Alu 1 114 -6 6 1132 242 289 99 11 chr6 71784377 71784468 -77732569 + L2a LINE L2 3311 3409 -17 6 1132 554 276 190 14 chr6 71784543 71784822 -77732215 - MLT2D LTR ERVL -4 410 83 6 1132 572 230 72 29 chr6 71784931 71785070 -77731967 + B3 SINE B2 1 145 -71 6 1132 3087 77 108 68 chr6 71785069 71785263 -77731774 - MTB-int LTR MaLR -547 551 391 6 1132 1235 68 0 0 chr6 71785263 71785410 -77731627 - B1_Mus2 SINE Alu 0 147 1 6 1132 3087 77 108 68 chr6 71785410 71785745 -77731292 - MTB-int LTR MaLR -708 390 1 6 1132 3291 75 5 2 chr6 71785745 71786144 -77730893 - MTB LTR MaLR 0 400 1 6 1132 24 0 0 0 chr6 71786157 71786181 -77730856 + AT_rich Low_complexity Low_complexity 1 24 0 6 1132 381 246 133 17 chr6 71786189 71786309 -77730728 - B3 SINE B2 -6 210 77 6 1132 431 244 211 15 chr6 71786381 71786514 -77730523 - RSINE1 SINE B4 0 165 7 6 1132 262 236 27 54 chr6 71786544 71786656 -77730381 - ID_B1 SINE B4 -43 181 73 6 1132 1981 154 33 70 chr6 71786725 71787123 -77729914 - RLTR9A2 LTR ERVK 0 383 1 6 1132 350 286 0 13 chr6 71787603 71787681 -77729356 + ID_B1 SINE B4 79 155 -69 6 1132 959 263 89 4 chr6 71787682 71787930 -77729107 + B4A SINE B4 2 270 -22 6 1132 1273 220 141 26 chr6 71788008 71788349 -77728688 + MTD LTR MaLR 26 405 -14 6 1132 415 129 0 0 chr6 71788380 71788442 -77728595 + ID_B1 SINE B4 153 214 -10 6 1132 234 0 0 0 chr6 71788442 71788468 -77728569 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1132 1828 174 53 69 chr6 71788528 71788904 -77728133 + ORR1D1 LTR MaLR 5 374 0 6 1132 245 265 113 108 chr6 71788962 71789025 -77728012 + L1MB5 LINE L1 5257 5300 -880 6 1132 913 121 57 0 chr6 71789025 71789166 -77727871 + B1_Mur4 SINE Alu 1 149 -1 7 1132 245 265 113 108 chr6 71789166 71789305 -77727732 + L1MB5 LINE L1 5301 5460 -720 6 1132 1233 68 0 0 chr6 71789318 71789464 -77727573 - B1_Mm SINE Alu 0 147 2 7 1132 526 265 71 87 chr6 71789566 71789818 -77727219 + L1MB5 LINE L1 5892 6139 -35 6 1132 240 59 0 0 chr6 71789938 71789972 -77727065 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1132 453 242 81 0 chr6 71790045 71790144 -77726893 + RSINE1 SINE B4 21 127 -38 7 1132 860 200 98 17 chr6 71790194 71790340 -77726697 + B3 SINE B2 2 164 -52 7 1132 258 32 0 0 chr6 71790340 71790371 -77726666 + (CATA)n Simple_repeat Simple_repeat 1 31 0 7 1132 860 200 98 17 chr6 71790371 71790397 -77726640 + B3 SINE B2 165 187 -29 7 1132 23 78 0 0 chr6 71790400 71790451 -77726586 + AT_rich Low_complexity Low_complexity 1 51 0 7 1132 428 300 202 8 chr6 71790585 71790827 -77726210 - MLT1G1 LTR MaLR -164 415 127 7 1132 393 212 81 2 chr6 71790830 71790938 -77726099 - L1MB5 LINE L1 -226 6016 5904 7 1132 180 111 0 0 chr6 71791046 71791073 -77725964 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1132 739 93 34 8 chr6 71791306 71791425 -77725612 - Lx LINE L1 -2 6652 6531 7 1132 1040 240 62 11 chr6 71791425 71791699 -77725338 - Lx8 LINE L1 -767 6706 6419 7 1132 4951 129 49 9 chr6 71791914 71792665 -77724372 - Lx LINE L1 -12 6642 5862 7 1132 1516 64 37 5 chr6 71792669 71792858 -77724179 - B2_Mm2 SINE B2 0 195 1 7 1132 295 301 133 86 chr6 71792885 71793209 -77723828 - MLT1G1-int LTR MaLR -197 1292 929 7 1132 225 0 0 0 chr6 71793274 71793299 -77723738 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1132 411 257 24 129 chr6 71793309 71793597 -77723440 - ORR1E LTR MaLR 0 379 109 7 1132 539 111 508 0 chr6 71793610 71793736 -77723301 + B2_Mm2 SINE B2 1 190 -5 7 1132 248 337 65 0 chr6 71793830 71793922 -77723115 + PB1D9 SINE Alu 17 114 -6 7 1132 481 230 114 9 chr6 71793945 71794059 -77722978 + RSINE1 SINE B4 3 128 -37 7 1132 379 226 70 23 chr6 71794250 71794336 -77722701 - PB1D7 SINE Alu 0 120 31 7 1132 241 323 72 10 chr6 71794488 71794585 -77722452 - PB1D10 SINE Alu -8 109 7 7 1132 519 60 0 0 chr6 71794773 71794840 -77722197 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1132 1220 94 71 16 chr6 71794899 71795083 -77721954 + B2_Mm2 SINE B2 2 195 0 7 1132 618 169 34 10 chr6 71795153 71795283 -77721754 - B1_Mur4 SINE Alu -1 149 18 7 1132 766 232 126 19 chr6 71795294 71795501 -77721536 + Tigger7 DNA MER2_type 2263 2491 0 7 1132 341 307 0 0 chr6 71795815 71795890 -77721147 - PB1D7 SINE Alu -20 100 26 7 1132 1731 21 5 0 chr6 71796526 71796712 -77720325 - B2_Mm1t SINE B2 -5 188 2 7 1132 312 310 70 0 chr6 71796717 71796817 -77720220 - PB1D10 SINE Alu -7 110 4 7 1132 494 77 352 9 chr6 71796920 71797025 -77720012 - B2_Mm2 SINE B2 -9 186 46 7 1132 1284 108 11 6 chr6 71797076 71797253 -77719784 - B2_Mm1t SINE B2 -14 179 2 7 1132 29 47 0 0 chr6 71797607 71797650 -77719387 + AT_rich Low_complexity Low_complexity 1 43 0 7 1132 234 0 0 0 chr6 71797655 71797681 -77719356 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1132 369 0 0 0 chr6 71797681 71797721 -77719316 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 1132 289 287 57 11 chr6 71797727 71797815 -77719222 - RSINE1 SINE B4 -57 108 17 7 1132 596 219 73 96 chr6 71797848 71797892 -77719145 - B3 SINE B2 -82 134 103 7 1132 1524 65 16 0 chr6 71797892 71798077 -77718960 + B2_Mm2 SINE B2 2 189 -6 7 1132 596 219 73 96 chr6 71798077 71798168 -77718869 - B3 SINE B2 -114 102 2 7 1132 563 52 531 0 chr6 71798189 71798285 -77718752 + B1_Mus1 SINE Alu 1 147 -1 7 1132 513 84 0 0 chr6 71798287 71798358 -77718679 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1132 1002 207 74 5 chr6 71798375 71798564 -77718473 - B3 SINE B2 -14 202 1 7 1132 891 171 227 0 chr6 71799570 71799746 -77717291 - B3 SINE B2 0 216 1 7 1132 459 260 63 82 chr6 71799754 71799913 -77717124 + B4A SINE B4 66 221 -71 7 1132 1028 99 0 7 chr6 71799777 71799919 -77717118 + B1_Mus1 SINE Alu 8 148 0 7 1132 404 258 217 0 chr6 71799960 71800080 -77716957 + RSINE1 SINE B4 3 148 -17 7 1132 355 221 281 37 chr6 71800214 71800378 -77716659 + RLTR15 LTR ERVK 2 205 -154 7 1132 522 262 39 0 chr6 71800745 71800848 -77716189 + PB1D7 SINE Alu 7 113 -7 7 1132 1104 168 82 16 chr6 71800861 71801055 -77715982 + B3 SINE B2 2 208 -8 7 1132 243 0 0 0 chr6 71803621 71803648 -77713389 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1132 409 333 9 0 chr6 71803664 71803776 -77713261 - B4A SINE B4 -12 280 168 7 1132 603 184 154 163 chr6 71803776 71803866 -77713171 + URR1A DNA MER1_type 2 87 -139 7 1132 1242 61 0 7 chr6 71803866 71804014 -77713023 - B1_Mus1 SINE Alu 0 148 2 7 1132 603 184 154 163 chr6 71804014 71804150 -77712887 + URR1A DNA MER1_type 88 226 0 7 1132 554 288 54 18 chr6 71804150 71804313 -77712724 - B4A SINE B4 -121 171 3 7 1132 855 56 28 12 chr6 71804447 71804572 -77712465 - B1_Mus1 SINE Alu -4 144 39 7 1132 185 94 31 0 chr6 71804873 71804905 -77712132 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 7 1132 319 292 30 30 chr6 71804937 71805036 -77712001 - B1F SINE Alu -27 122 24 7 1132 525 262 39 52 chr6 71805746 71805899 -77711138 - RSINE1 SINE B4 -2 163 13 7 1132 326 267 0 0 chr6 71805939 71805999 -77711038 - B1F2 SINE Alu -89 60 1 7 1132 1281 54 0 0 chr6 71806347 71806494 -77710543 - B1_Mus2 SINE Alu 0 147 1 7 1132 682 232 87 16 chr6 71806521 71806705 -77710332 - B3 SINE B2 0 216 20 7 1132 334 322 41 69 chr6 71807140 71807283 -77709754 - B1F1 SINE Alu 0 150 13 7 1132 289 263 0 0 chr6 71807360 71807417 -77709620 - ID_B1 SINE B4 -7 217 161 7 1132 1267 104 52 47 chr6 71807451 71807642 -77709395 - B2_Mm2 SINE B2 -3 192 1 7 1132 446 226 128 0 chr6 71807709 71807811 -77709226 - ID_B1 SINE B4 -4 220 106 7 1132 330 26 0 0 chr6 71807896 71807935 -77709102 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 7 1132 678 197 114 0 chr6 71807947 71808079 -77708958 - B1_Mur4 SINE Alu -2 148 2 7 1132 632 213 25 80 chr6 71808432 71808631 -77708406 + B2_Mm2 SINE B2 5 192 -3 7 1132 1288 22 0 0 chr6 71808659 71808797 -77708240 + B1_Mm SINE Alu 1 138 -9 7 1132 194 0 39 0 chr6 71808797 71808823 -77708214 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1132 493 161 171 39 chr6 71808829 71808958 -77708079 + B1_Mus2 SINE Alu 2 147 0 7 1132 1048 221 33 0 chr6 71809359 71809572 -77707465 - ID_B1 SINE B4 -2 222 3 7 1132 260 303 26 13 chr6 71809588 71809665 -77707372 - PB1D10 SINE Alu 0 117 40 7 1132 343 296 86 29 chr6 71809724 71809863 -77707174 - B1F1 SINE Alu 0 149 3 7 1132 474 332 68 37 chr6 71809999 71810298 -77706739 - B4 SINE B4 -12 280 1 7 1132 22 35 0 0 chr6 71810574 71810603 -77706434 + AT_rich Low_complexity Low_complexity 1 29 0 7 1132 736 102 136 0 chr6 71811662 71811780 -77705257 - MTD LTR MaLR -91 328 195 7 1132 585 40 0 0 chr6 71811781 71811857 -77705180 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 7 1132 1088 94 0 27 chr6 71811872 71812057 -77704980 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 1132 526 229 25 8 chr6 71812057 71812176 -77704861 - MTD LTR MaLR -293 126 6 7 1132 757 189 68 12 chr6 71812602 71812763 -77704274 + B2_Mm2 SINE B2 1 170 -25 7 1132 639 292 0 31 chr6 71812806 71812965 -77704072 + RSINE1 SINE B4 12 165 0 7 1132 25 0 0 0 chr6 71813532 71813557 -77703480 + AT_rich Low_complexity Low_complexity 1 25 0 7 1132 1260 61 0 7 chr6 71813557 71813705 -77703332 - B1_Mus2 SINE Alu 0 147 1 7 1132 282 325 13 13 chr6 71813854 71813932 -77703105 - PB1D10 SINE Alu -35 82 5 7 1132 612 245 14 28 chr6 71814031 71814174 -77702863 + B1_Mur2 SINE Alu 1 141 -8 7 1132 275 285 25 53 chr6 71814397 71814486 -77702551 + ID4 SINE ID 2 86 -66 7 1132 741 210 40 34 chr6 71814486 71814634 -77702403 + B1_Mur2 SINE Alu 1 149 0 7 1132 231 283 25 58 chr6 71814634 71814665 -77702372 + BC1_Mm scRNA scRNA 87 118 -34 7 1132 333 215 25 25 chr6 71814665 71814746 -77702291 + ID4 SINE ID 3 83 0 7 1132 231 283 25 58 chr6 71814746 71814757 -77702280 + BC1_Mm scRNA scRNA 119 129 -23 7 1132 676 271 7 0 chr6 71814819 71814959 -77702078 + RSINE1 SINE B4 6 146 -19 7 1132 26 64 0 0 chr6 71814966 71815013 -77702024 + AT_rich Low_complexity Low_complexity 1 47 0 7 1132 733 271 54 29 chr6 71815107 71815312 -77701725 + B3 SINE B2 1 210 -6 7 1132 1472 75 27 0 chr6 71815504 71815691 -77701346 - B2_Mm1t SINE B2 -1 192 1 7 1132 248 261 111 71 chr6 71815740 71815839 -77701198 + PB1D10 SINE Alu 15 117 0 7 1132 1299 48 0 0 chr6 71816401 71816548 -77700489 + B1_Mus2 SINE Alu 1 147 0 7 1132 228 35 0 0 chr6 71817464 71817493 -77699544 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 7 1132 1062 115 0 43 chr6 71817493 71817657 -77699380 - B2_Mm2 SINE B2 -38 157 1 7 1132 1016 197 55 15 chr6 71817883 71818084 -77698953 + B3 SINE B2 6 214 -2 7 1132 252 59 0 0 chr6 71818086 71818120 -77698917 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1132 290 26 26 0 chr6 71818377 71818416 -77698621 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7 1132 748 178 23 23 chr6 71818916 71819088 -77697949 - B2_Mm2 SINE B2 0 195 22 7 1132 201 74 0 0 chr6 71820086 71820113 -77696924 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1132 227 200 40 0 chr6 71820137 71820187 -77696850 - PB1D7 SINE Alu -16 104 53 7 1132 209 333 56 47 chr6 71821140 71821247 -77695790 + MIRb SINE MIR 5 112 -156 7 1132 524 220 56 37 chr6 71821833 71821995 -77695042 - B3 SINE B2 -4 212 2 7 1132 847 234 0 0 chr6 71822088 71822233 -77694804 + B1_Mus2 SINE Alu 1 145 -2 8 1132 1058 209 19 28 chr6 71822292 71822504 -77694533 - B3 SINE B2 -6 210 1 8 1132 752 163 104 0 chr6 71822526 71822661 -77694376 - B1F2 SINE Alu 0 149 1 8 1132 1173 197 39 19 chr6 71823410 71823617 -77693420 - B3 SINE B2 -5 211 1 8 1132 366 225 21 161 chr6 71823663 71823702 -77693335 + MT2B LTR ERVL 135 153 -448 8 1132 657 170 19 9 chr6 71823702 71823809 -77693228 + B1_Mur4 SINE Alu 1 108 -42 8 1132 418 162 323 0 chr6 71823884 71823983 -77693054 + B1_Mur1 SINE Alu 2 132 -17 8 1132 46 19 0 0 chr6 71824253 71824306 -77692731 + AT_rich Low_complexity Low_complexity 1 53 0 8 1132 282 164 116 29 chr6 71826388 71826457 -77690580 - B4 SINE B4 -62 230 156 8 1133 1790 26 0 0 chr6 71827843 71828035 -77689002 - B2_Mm1t SINE B2 0 193 2 8 1133 621 212 95 0 chr6 71828265 71828402 -77688635 - B1_Mur4 SINE Alu 0 150 1 8 1133 355 265 256 0 chr6 71828464 71828581 -77688456 + B3A SINE B2 1 147 -51 8 1133 371 228 137 10 chr6 71828843 71828945 -77688092 + PB1D9 SINE Alu 1 115 -5 8 1133 645 211 18 0 chr6 71829015 71829124 -77687913 + PB1D9 SINE Alu 1 111 -9 8 1133 225 250 315 0 chr6 71829158 71829266 -77687771 + B4A SINE B4 84 225 -67 8 1133 527 191 203 15 chr6 71831737 71831870 -77685167 - B3 SINE B2 -54 162 5 8 1133 604 282 25 31 chr6 71833780 71833941 -77683096 - RSINE1 SINE B4 0 165 6 8 1133 23 33 0 0 chr6 71833953 71833983 -77683054 + AT_rich Low_complexity Low_complexity 1 30 0 8 1133 578 198 256 6 chr6 71833988 71834156 -77682881 - B3 SINE B2 -5 211 2 8 1133 367 271 31 0 chr6 71834209 71834305 -77682732 - B3A SINE B2 -95 103 5 8 1133 293 218 24 21 chr6 71834743 71834832 -77682205 + B1_Mm SINE Alu 23 139 -8 8 1133 1251 135 16 0 chr6 71835046 71835238 -77681799 + B2_Mm2 SINE B2 1 195 0 8 1133 5515 182 70 82 chr6 71836276 71836684 -77680353 - RMER12B LTR ERVK -264 1308 1028 8 1133 957 52 96 7 chr6 71836684 71836819 -77680218 + B1_Mus1 SINE Alu 1 147 -1 8 1133 5515 127 117 21 chr6 71836819 71837743 -77679294 - RMER12B LTR ERVK -377 1027 1 8 1133 284 136 182 0 chr6 71837750 71837816 -77679221 + RMER12B LTR ERVK 1184 1261 -143 8 1133 349 209 11 75 chr6 71837784 71837877 -77679160 + RMER12B LTR ERVK 1174 1260 -144 8 1133 412 326 85 89 chr6 71838202 71838495 -77678542 + B4A SINE B4 1 292 0 8 1133 24 32 0 0 chr6 71838506 71838537 -77678500 + AT_rich Low_complexity Low_complexity 1 31 0 8 1133 261 0 0 0 chr6 71838778 71838807 -77678230 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1133 630 0 0 0 chr6 71839827 71839897 -77677140 + (TCCA)n Simple_repeat Simple_repeat 2 71 0 8 1133 228 288 118 55 chr6 71840093 71840203 -77676834 + ID_B1 SINE B4 107 223 -1 8 1133 517 121 33 0 chr6 71840220 71840311 -77676726 - URR1A DNA MER1_type -74 152 59 8 1133 1020 145 129 5 chr6 71840458 71840659 -77676378 + URR1A DNA MER1_type 1 226 0 8 1133 278 264 56 33 chr6 71841596 71841686 -77675351 + RSINE1 SINE B4 2 93 -72 8 1133 641 267 51 20 chr6 71841995 71842190 -77674847 - B3 SINE B2 0 216 16 8 1133 640 171 26 91 chr6 71842197 71842351 -77674686 - B1_Mus2 SINE Alu -1 146 3 8 1133 434 298 116 10 chr6 71842956 71843163 -77673874 - MER2 DNA MER2_type 0 345 117 8 1133 567 256 16 0 chr6 71843671 71843796 -77673241 + B1_Mur1 SINE Alu 18 144 -5 8 1133 835 110 7 14 chr6 71844628 71844775 -77672262 + URR1A DNA MER1_type 81 226 0 8 1133 393 293 25 81 chr6 71844973 71845133 -77671904 + MER20 DNA MER1_type 17 167 -52 8 1133 221 256 171 0 chr6 71845618 71845700 -77671337 + B1F2 SINE Alu 48 143 -6 8 1133 489 238 224 0 chr6 71846326 71846469 -77670568 - B3A SINE B2 -18 180 6 8 1133 613 194 70 28 chr6 71846786 71846929 -77670108 + B1_Mur2 SINE Alu 1 149 0 8 1133 362 195 104 0 chr6 71847385 71847462 -77669575 - B1_Mus2 SINE Alu -62 85 1 8 1133 239 231 225 25 chr6 71847496 71847576 -77669461 + PB1 SINE Alu 32 127 0 8 1133 836 158 29 7 chr6 71847601 71847741 -77669296 + B1_Mus2 SINE Alu 5 147 0 8 1133 2524 63 39 18 chr6 71848618 71849005 -77668032 + MTB LTR MaLR 6 400 0 8 1133 494 27 0 51 chr6 71849315 71849382 -77667655 + B1_Mur4 SINE Alu 77 140 -10 8 1133 207 0 0 0 chr6 71849382 71849405 -77667632 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1133 814 178 109 50 chr6 71849553 71849754 -77667283 + B3 SINE B2 1 213 -3 8 1133 278 158 158 0 chr6 71849835 71849892 -77667145 + PB1D10 SINE Alu 15 80 -37 8 1133 839 203 33 28 chr6 71850513 71850611 -77666426 + B3 SINE B2 3 100 -116 8 1133 1356 74 11 0 chr6 71850611 71850787 -77666250 + B2_Mm1t SINE B2 1 178 -15 8 1133 839 203 33 28 chr6 71850787 71850901 -77666136 + B3 SINE B2 101 216 0 8 1133 846 295 120 12 chr6 71851738 71852071 -77664966 + MTE2b LTR MaLR 3 371 -8 8 1133 22 0 0 0 chr6 71853557 71853579 -77663458 + AT_rich Low_complexity Low_complexity 1 22 0 8 1133 342 344 90 49 chr6 71853965 71854188 -77662849 + B4 SINE B4 1 232 -60 8 1133 569 225 8 8 chr6 71854406 71854527 -77662510 - B1_Mus2 SINE Alu -22 125 5 8 1133 22 56 0 0 chr6 71854638 71854674 -77662363 + AT_rich Low_complexity Low_complexity 1 36 0 8 1133 691 201 7 46 chr6 71854723 71854874 -77662163 + B1_Mur3 SINE Alu 5 149 0 8 1133 724 291 29 0 chr6 71855749 71855959 -77661078 - ID_B1 SINE B4 -4 220 5 8 1133 185 65 32 0 chr6 71855974 71856005 -77661032 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1133 223 345 48 0 chr6 71856934 71856946 -77660091 - B4 SINE B4 -111 181 94 8 1133 333 236 28 0 chr6 71856946 71857018 -77660019 - B1F2 SINE Alu -67 82 9 8 1133 224 268 142 27 chr6 71857267 71857323 -77659714 - B1_Mur2 SINE Alu -6 114 16 8 1133 227 235 0 0 chr6 71857323 71857374 -77659663 - MT2B2 LTR ERVL -362 222 172 8 1133 1301 20 0 0 chr6 71859657 71859803 -77657234 + B1_Mus1 SINE Alu 2 147 -1 8 1133 565 147 43 8 chr6 71859820 71859937 -77657100 + B1_Mur4 SINE Alu 30 150 0 8 1133 951 279 108 90 chr6 71859971 71860243 -77656794 - L1MB3 LINE L1 -104 6079 5833 8 1133 321 26 0 0 chr6 71860243 71860281 -77656756 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 8 1133 951 279 108 90 chr6 71860281 71860324 -77656713 - L1MB3 LINE L1 -351 5832 5794 8 1133 306 0 0 0 chr6 71860324 71860358 -77656679 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 8 1133 951 279 108 90 chr6 71860358 71860783 -77656254 - L1MB3 LINE L1 -390 5793 5325 8 1133 214 192 39 0 chr6 71860783 71860835 -77656202 - L2b LINE L2 -356 3019 2966 8 1133 181 300 20 0 chr6 71860869 71860919 -77656118 - L2b LINE L2 -520 2899 2849 8 1133 791 199 214 5 chr6 71861006 71861193 -77655844 + URR1A DNA MER1_type 1 226 0 8 1133 590 195 0 8 chr6 71861515 71861634 -77655403 - PB1D9 SINE Alu -2 118 1 8 1133 310 222 62 0 chr6 71861642 71861723 -77655314 + L1MB3 LINE L1 6098 6183 0 8 1133 1864 164 39 122 chr6 71863291 71863480 -77653557 + RLTR31A_Mm LTR ERVK 1 155 -429 8 1133 1276 27 0 0 chr6 71863480 71863627 -77653410 - B1_Mus2 SINE Alu 0 147 1 8 1133 1864 164 39 122 chr6 71863627 71864001 -77653036 + RLTR31A_Mm LTR ERVK 156 517 -67 8 1133 333 264 193 17 chr6 71865372 71865553 -77651484 + L1MC4 LINE L1 6816 7028 -1014 8 1133 1070 136 5 25 chr6 71865560 71865756 -77651281 - RMER19B LTR ERVK 0 902 711 8 1133 1606 53 0 0 chr6 71866136 71866324 -77650713 - B2_Mm1a SINE B2 -4 189 2 8 1133 479 180 30 10 chr6 71866362 71866463 -77650574 - B1F2 SINE Alu -4 145 43 8 1133 639 280 13 6 chr6 71866462 71866620 -77650417 - B3 SINE B2 -57 159 1 8 1133 229 250 85 21 chr6 71866834 71866928 -77650109 + LTR87 LTR ERVL? 499 598 -26 8 1133 504 279 62 57 chr6 71868653 71868847 -77648190 + B3A SINE B2 4 198 0 8 1133 1465 23 97 0 chr6 71869323 71869498 -77647539 + B2_Mm1a SINE B2 2 193 0 8 1133 602 217 119 102 chr6 71869988 71870214 -77646823 - ORR1D2 LTR MaLR -140 230 1 8 1133 343 340 57 0 chr6 71870297 71870403 -77646634 + PB1D7 SINE Alu 4 115 -5 8 1133 228 229 197 0 chr6 71871059 71871120 -77645917 - ID_B1 SINE B4 -68 156 84 8 1133 786 210 7 0 chr6 71872409 71872547 -77644490 - B1_Mur1 SINE Alu -9 140 2 8 1133 576 215 40 46 chr6 71872583 71872734 -77644303 + RSINE1 SINE B4 3 152 -13 8 1133 265 336 81 81 chr6 71873581 71873730 -77643307 + RSINE1 SINE B4 17 165 0 8 1133 324 241 53 18 chr6 71873882 71873996 -77643041 + L1M5 LINE L1 5713 5830 -294 8 1133 435 211 72 18 chr6 71873998 71874109 -77642928 + PB1D10 SINE Alu 1 117 0 8 1133 383 255 38 0 chr6 71874211 71874317 -77642720 - PB1D10 SINE Alu -6 111 2 8 1133 768 158 60 0 chr6 71874984 71875117 -77641920 + B1_Mur2 SINE Alu 1 141 -8 8 1133 21 36 0 0 chr6 71875763 71875791 -77641246 + AT_rich Low_complexity Low_complexity 1 28 0 8 1133 1005 52 52 0 chr6 71875830 71875966 -77641071 - B1_Mus2 SINE Alu 0 147 5 8 1133 489 34 0 0 chr6 71878367 71878426 -77638611 + (TTA)n Simple_repeat Simple_repeat 2 60 0 8 1133 747 206 21 21 chr6 71878428 71878617 -77638420 - ID_B1 SINE B4 -12 212 24 8 1133 1130 85 94 22 chr6 71879027 71879208 -77637829 - B2_Mm2 SINE B2 -1 194 1 8 1133 225 0 0 0 chr6 71882071 71882096 -77634941 + (GCTTG)n Simple_repeat Simple_repeat 5 29 0 8 1133 568 200 20 79 chr6 71885018 71885170 -77631867 - RSINE1 SINE B4 -18 147 5 8 1133 248 240 0 0 chr6 71885171 71885221 -77631816 + PB1D10 SINE Alu 48 97 -20 9 1133 1987 254 194 15 chr6 71886975 71887647 -77629390 - Lx9 LINE L1 -564 7080 6289 9 1133 220 269 175 5 chr6 71888129 71888281 -77628756 - MIR SINE MIR -3 265 85 9 1133 1828 5 0 0 chr6 71889233 71889438 -77627599 - L1Md_A LINE L1 0 6582 6378 9 1133 342 230 70 0 chr6 71889956 71890056 -77626981 - Lx7 LINE L1 -384 7312 7206 9 1133 222 325 0 38 chr6 71890850 71890930 -77626107 + MIRm SINE MIR 200 276 0 9 1133 782 215 129 37 chr6 71892641 71892905 -77624132 - MTEb LTR MaLR -7 372 6 9 1133 441 0 0 0 chr6 71892922 71892971 -77624066 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1133 255 245 37 19 chr6 71893005 71893059 -77623978 - RSINE1 SINE B4 -109 56 2 9 1133 287 25 0 24 chr6 71893068 71893109 -77623928 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 9 1133 3456 81 87 0 chr6 71893188 71893743 -77623294 - MusHAL1 LINE L1 -627 2085 1483 9 1133 1034 223 10 14 chr6 71894271 71894480 -77622557 - B3 SINE B2 0 216 9 9 1133 529 213 21 0 chr6 71894512 71894606 -77622431 - PB1D10 SINE Alu -21 96 1 9 1133 717 311 119 23 chr6 71894810 71895330 -77621707 - L1MA5 LINE L1 -6 6294 5725 9 1133 973 228 23 45 chr6 71896035 71896256 -77620781 - B3 SINE B2 0 216 1 9 1133 324 286 57 97 chr6 71896678 71896802 -77620235 + MLT1A0 LTR MaLR 8 126 -239 9 1133 185 294 92 23 chr6 71897055 71897142 -77619895 + L2a LINE L2 3146 3238 -188 9 1133 2222 120 104 104 chr6 71897705 71898197 -77618840 - RMER6A LTR ERVK -264 492 1 9 1133 303 271 0 0 chr6 71898978 71899048 -77617989 - tRNA-Ala-GCY_ tRNA tRNA -5 70 1 9 1133 241 295 0 37 chr6 71899180 71899261 -77617776 - L4 LINE RTE -4 2025 1948 9 1133 1236 29 0 0 chr6 71901621 71901760 -77615277 + B1_Mus2 SINE Alu 1 139 -8 9 1133 882 192 212 11 chr6 71902163 71902342 -77614695 - B3 SINE B2 0 216 2 9 1133 1472 120 233 26 chr6 71902360 71902669 -77614368 - ORR1C1 LTR MaLR 0 378 6 9 1133 1142 258 41 11 chr6 71903400 71903671 -77613366 + B4A SINE B4 6 284 -8 9 1133 374 0 22 0 chr6 71903680 71903726 -77613311 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1133 907 215 112 28 chr6 71904053 71904372 -77612665 - MTD LTR MaLR -8 413 16 9 1133 243 0 0 0 chr6 71904372 71904399 -77612638 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1133 907 203 25 25 chr6 71904399 71904413 -77612624 - MTD LTR MaLR -404 15 4 9 1133 313 258 101 11 chr6 71905044 71905144 -77611893 + B1F SINE Alu 1 107 -42 9 1133 459 52 0 0 chr6 71905144 71905202 -77611835 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 9 1133 283 275 68 76 chr6 71905202 71905219 -77611818 + PB1D10 SINE Alu 106 117 0 9 1133 2972 25 11 35 chr6 71905420 71905796 -77611241 - IAPLTR1_Mm LTR ERVK 0 367 1 9 1133 28125 19 1 2 chr6 71905796 71909072 -77607965 - IAPEz-int LTR ERVK 0 6481 3209 9 1133 8011 97 44 46 chr6 71909070 71910378 -77606659 - IAPEz-int LTR ERVK -5168 1313 8 9 1133 2972 25 11 35 chr6 71910378 71910754 -77606283 - IAPLTR1_Mm LTR ERVK 0 367 1 9 1133 476 248 0 28 chr6 71911065 71911173 -77605864 + PB1D10 SINE Alu 13 117 0 9 1133 499 339 40 11 chr6 71911814 71911990 -77605047 - RMER30 DNA MER1_type -21 181 1 9 1133 194 317 85 0 chr6 71912892 71912974 -77604063 - L2 LINE L2 -998 2421 2333 9 1133 591 147 29 19 chr6 71914252 71914356 -77602681 - B1_Mus2 SINE Alu 0 147 43 9 1133 572 234 76 28 chr6 71919336 71919481 -77597556 + RSINE1 SINE B4 4 155 -10 9 1133 787 200 87 27 chr6 71919872 71920057 -77596980 - B3A SINE B2 -2 196 1 9 1133 213 245 19 0 chr6 71920396 71920449 -77596588 + CT-rich Low_complexity Low_complexity 5 58 0 9 1133 305 268 0 27 chr6 71920478 71920551 -77596486 - L1MEg LINE L1 -4140 1944 1874 9 1133 236 192 62 99 chr6 71920661 71920742 -77596295 + MIRc SINE MIR 2 79 -189 9 1133 933 214 51 0 chr6 71921556 71921752 -77595285 + B3 SINE B2 3 208 -8 9 1133 201 147 0 0 chr6 71924752 71924786 -77592251 + (GGA)n Simple_repeat Simple_repeat 2 35 0 9 1133 988 195 74 10 chr6 71925132 71925334 -77591703 - B3 SINE B2 -1 215 1 9 1133 227 103 0 25 chr6 71925937 71925977 -77591060 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 9 1133 448 241 17 77 chr6 71930904 71931021 -77586016 + B1F2 SINE Alu 6 115 -2 9 1133 359 220 511 58 chr6 71931889 71932090 -77584947 - B4A SINE B4 0 292 1 9 1133 505 242 109 73 chr6 71932313 71932505 -77584532 + MER20 DNA MER1_type 2 200 -19 9 1133 2218 205 55 93 chr6 71932541 71933176 -77583861 - RMER19C LTR ERVK 0 611 1 9 1133 653 259 70 0 chr6 71933283 71933441 -77583596 - B4 SINE B4 -123 169 1 9 1133 823 185 14 0 chr6 71933504 71933656 -77583381 + B2_Mm2 SINE B2 2 167 -26 9 1133 3369 36 21 0 chr6 71933759 71934147 -77582890 + MTA_Mm LTR MaLR 1 396 0 9 1133 804 220 76 27 chr6 71934971 71935325 -77581712 + RMER17C LTR ERVK 1 405 -5 9 1133 1215 69 0 0 chr6 71935337 71935482 -77581555 + B1_Mus1 SINE Alu 3 147 -1 9 1133 254 171 0 0 chr6 71935500 71935541 -77581496 + B2_Mm2 SINE B2 89 129 -66 9 1133 33 0 0 0 chr6 71935544 71935577 -77581460 + AT_rich Low_complexity Low_complexity 1 33 0 9 1133 458 125 0 12 chr6 71935625 71935706 -77581331 + (GA)n Simple_repeat Simple_repeat 1 80 0 9 1133 757 209 82 0 chr6 71935785 71935943 -77581094 - MTC LTR MaLR -187 234 64 9 1133 406 209 65 11 chr6 71935941 71936033 -77581004 + MTEa LTR MaLR 261 357 -22 9 1133 457 320 157 5 chr6 71936136 71936340 -77580697 - ORR1E LTR MaLR -122 237 3 9 1133 404 197 0 0 chr6 71936512 71936583 -77580454 - MTC LTR MaLR -287 134 64 9 1133 477 0 0 0 chr6 71936598 71936651 -77580386 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 1133 306 73 0 0 chr6 71936651 71936691 -77580346 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1133 274 164 0 35 chr6 71936693 71936750 -77580287 - MTC LTR MaLR 0 421 367 9 1133 1230 77 6 23 chr6 71936752 71936924 -77580113 + B2_Mm1a SINE B2 2 170 -23 9 1133 1182 65 0 0 chr6 71936926 71937064 -77579973 + B1_Mus1 SINE Alu 2 139 -9 9 1133 2324 152 11 0 chr6 71937090 71937451 -77579586 - MTC LTR MaLR -44 377 13 9 1133 530 276 60 70 chr6 71938169 71938453 -77578584 + RLTR15 LTR ERVK 1 281 -78 9 1133 588 200 0 55 chr6 71938531 71938658 -77578379 + PB1D7 SINE Alu 1 120 0 9 1133 669 265 86 5 chr6 71938830 71939016 -77578021 + B3 SINE B2 1 201 -15 9 1133 417 191 0 0 chr6 71939019 71939124 -77577913 + (CA)n Simple_repeat Simple_repeat 2 106 0 9 1133 349 256 26 0 chr6 71939241 71939319 -77577718 + B1_Mus1 SINE Alu 22 101 -47 9 1133 638 237 0 0 chr6 71939382 71939496 -77577541 + RSINE1 SINE B4 4 117 -48 9 1133 220 288 106 54 chr6 71940444 71940657 -77576380 - MIRc SINE MIR -31 231 16 9 1133 495 0 0 0 chr6 71941925 71941980 -77575057 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1133 247 303 218 12 chr6 71942759 71942929 -77574108 + B4A SINE B4 2 206 -86 9 1133 306 73 0 0 chr6 71942970 71943011 -77574026 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1133 199 300 0 0 chr6 71943323 71943363 -77573674 + MIRc SINE MIR 88 127 -141 9 1133 666 65 0 0 chr6 71943440 71943532 -77573505 + (TC)n Simple_repeat Simple_repeat 1 92 0 9 1133 276 353 57 46 chr6 71943880 71944055 -77572982 - LTR16A LTR ERVL -29 422 246 9 1133 207 0 0 0 chr6 71944376 71944399 -77572638 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1133 841 244 109 32 chr6 71944555 71944868 -77572169 + Lx8 LINE L1 6778 7114 -359 9 1133 844 233 98 5 chr6 71945050 71945244 -77571793 - B3 SINE B2 -4 212 1 9 1133 271 287 189 12 chr6 71945350 71945519 -77571518 + L1ME3 LINE L1 5938 6136 -26 9 1133 1120 97 0 0 chr6 71945715 71945859 -77571178 - B1_Mm SINE Alu -2 145 2 9 1133 783 247 70 33 chr6 71945945 71946080 -77570957 - Lx8 LINE L1 0 7473 7330 9 1133 216 0 0 0 chr6 71946080 71946104 -77570933 + (TTA)n Simple_repeat Simple_repeat 1 24 0 9 1133 783 247 70 33 chr6 71946104 71946211 -77570826 - Lx8 LINE L1 -144 7329 7223 9 1133 2478 158 28 9 chr6 71946211 71946734 -77570303 - RMER4B LTR ERVK 0 585 17 9 1133 305 274 0 0 chr6 71946740 71946813 -77570224 - Lx8 LINE L1 -244 7229 7157 9 1133 194 91 30 0 chr6 71947011 71947044 -77569993 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 9 1133 347 89 18 0 chr6 71947044 71947099 -77569938 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1133 348 200 13 39 chr6 71947147 71947225 -77569812 - RSINE1 SINE B4 -88 77 2 9 1133 919 189 21 26 chr6 71947253 71947443 -77569594 + B4 SINE B4 3 191 -101 9 1133 314 245 37 84 chr6 71947348 71947455 -77569582 + PB1D10 SINE Alu 9 110 -7 9 1133 204 125 0 0 chr6 71947509 71947541 -77569496 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1133 790 331 110 10 chr6 71947631 71947939 -77569098 - MER2 DNA MER2_type -6 339 1 9 1133 556 293 69 25 chr6 71947943 71948262 -77568775 - ORSL-2b DNA Tip100 -101 407 75 9 1133 1943 250 112 18 chr6 71948263 71949127 -77567910 - Lx6 LINE L1 -43 7417 6257 9 1133 299 252 52 21 chr6 71949128 71949225 -77567812 + Lx5 LINE L1 6119 6256 -794 9 1133 710 287 107 8 chr6 71950516 71950769 -77566268 + B4A SINE B4 15 292 0 9 1133 726 98 25 0 chr6 71950817 71950939 -77566098 + (GA)n Simple_repeat Simple_repeat 2 126 0 9 1133 676 270 53 14 chr6 71951435 71951642 -77565395 + B4A SINE B4 1 215 -77 9 1133 564 15 0 0 chr6 71951642 71951707 -77565330 + (GA)n Simple_repeat Simple_repeat 2 66 0 9 1133 2279 250 108 22 chr6 71951929 71952660 -77564377 - Lx9 LINE L1 -1 7643 6850 9 1133 501 220 0 0 chr6 71952683 71952774 -77564263 - B1_Mur1 SINE Alu 0 149 59 1 1133 1141 88 0 0 chr6 71953173 71953320 -77563717 - B1_Mus1 SINE Alu 0 148 2 1 1133 321 215 73 31 chr6 71953423 71953519 -77563518 - MER45C DNA Tip100 -740 213 114 1 1133 399 226 36 0 chr6 71953589 71953673 -77563364 - B1F2 SINE Alu -44 105 19 1 1133 378 0 0 0 chr6 71954105 71954147 -77562890 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1133 648 252 15 0 chr6 71954149 71954280 -77562757 - RSINE1 SINE B4 -21 144 12 1 1133 1118 211 5 0 chr6 71954555 71954763 -77562274 - B3 SINE B2 -6 210 2 1 1133 311 211 132 0 chr6 71955062 71955138 -77561899 - MIRb SINE MIR -140 128 43 1 1133 270 335 104 41 chr6 71955207 71955483 -77561554 + LTR16C LTR ERVL 236 525 -13 1 1133 1016 291 50 8 chr6 71955501 71955862 -77561175 - MTEb LTR MaLR -1 378 3 1 1133 236 328 113 28 chr6 71955876 71956017 -77561020 - MER117 DNA MER1_type 0 197 45 1 1133 1307 237 88 43 chr6 71956047 71956422 -77560615 + MTD LTR MaLR 21 412 -7 1 1133 1000 168 75 20 chr6 71956560 71956760 -77560277 + MTC LTR MaLR 37 247 -174 1 1133 1067 119 44 0 chr6 71956759 71956919 -77560118 + B2_Mm2 SINE B2 14 180 -15 1 1133 1410 46 0 0 chr6 71956919 71957135 -77559902 + (GAA)n Simple_repeat Simple_repeat 1 216 0 1 1133 393 214 277 23 chr6 71957136 71957285 -77559752 + MTC LTR MaLR 241 419 0 1 1133 282 318 67 15 chr6 71958092 71958226 -77558811 + B4A SINE B4 2 142 -150 1 1133 777 301 115 0 chr6 71958234 71958503 -77558534 - RMER15 LTR ERVL -2 573 274 1 141 574 229 37 56 chr6 71958499 71958661 -77558376 - RMER15 LTR ERVL -416 159 1 1 1134 260 173 152 119 chr6 71958661 71958741 -77558296 + MTE-int LTR MaLR 386 469 -1111 1 1134 327 219 16 139 chr6 71958694 71958816 -77558221 + B4A SINE B4 186 292 0 1 1134 399 21 0 0 chr6 71958832 71958880 -77558157 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1134 453 272 96 9 chr6 71958904 71959019 -77558018 + ID_B1 SINE B4 85 209 -15 1 1134 348 281 154 15 chr6 71959019 71959031 -77558006 + B1F1 SINE Alu 4 148 -1 1 1134 337 271 0 103 chr6 71959658 71959700 -77557337 + B4A SINE B4 55 85 -207 1 1134 434 238 0 0 chr6 71959700 71959780 -77557257 + B1_Mur3 SINE Alu 1 80 -69 1 1134 1192 137 26 5 chr6 71959780 71959971 -77557066 - ORR1C1 LTR MaLR 0 378 184 1 1134 474 18 0 0 chr6 71959971 71960026 -77557011 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1134 253 222 130 0 chr6 71960029 71960083 -77556954 - MT2C_Mm LTR ERVL -92 383 323 1 1134 209 114 29 0 chr6 71960148 71960183 -77556854 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1134 440 265 121 73 chr6 71960363 71960611 -77556426 + RMER2 LTR ERV1 308 567 0 1 1134 715 194 42 45 chr6 71960611 71960804 -77556233 - MT2C_Mm LTR ERVL -170 431 87 1 1134 1164 36 0 7 chr6 71960804 71960943 -77556094 + B1_Mm SINE Alu 1 138 -9 1 1134 267 31 0 0 chr6 71960943 71960975 -77556062 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1134 715 251 182 40 chr6 71960975 71961137 -77555900 - MT2C_Mm LTR ERVL -278 197 2 1 1134 384 217 0 0 chr6 71961439 71961531 -77555506 + GA-rich Low_complexity Low_complexity 2 93 0 1 1134 1666 118 151 1 chr6 71961532 71961820 -77555217 + IAPEY2_LTR LTR ERVK 1 357 0 1 1134 761 152 81 108 chr6 71961846 71962031 -77555006 - ORR1C1 LTR MaLR -192 182 3 1 1134 710 236 268 37 chr6 71962143 71962316 -77554721 + Lx8 LINE L1 7141 7353 -120 1 1134 501 17 0 0 chr6 71962316 71962374 -77554663 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1 1134 710 236 268 37 chr6 71962374 71962469 -77554568 + Lx8 LINE L1 7354 7471 -2 1 1134 185 327 0 0 chr6 71962590 71962645 -77554392 - L2 LINE L2 -527 2892 2838 1 1134 511 285 31 31 chr6 71962659 71962786 -77554251 - B3A SINE B2 0 198 72 1 1134 336 297 289 16 chr6 71962810 71963115 -77553922 - L2 LINE L2 -864 2555 2168 1 1134 244 294 77 88 chr6 71963171 71963365 -77553672 - L2 LINE L2 -2719 700 509 1 1134 423 275 100 77 chr6 71963485 71963745 -77553292 - B4 SINE B4 -25 267 2 1 1134 511 312 30 64 chr6 71963907 71964143 -77552894 - Kanga2_a DNA Tc2 -526 362 135 1 1134 406 276 130 30 chr6 71964172 71964303 -77552734 + B1_Mus2 SINE Alu 4 147 0 1 1134 394 208 13 13 chr6 71964314 71964392 -77552645 + ID4_ SINE ID 6 83 0 1 1134 394 189 53 43 chr6 71964392 71964408 -77552629 + ID_B1 SINE B4 6 100 -124 1 1134 279 299 0 44 chr6 71964439 71964530 -77552507 + GA-rich Low_complexity Low_complexity 4 90 0 1 1134 2440 68 9 58 chr6 71964995 71965339 -77551698 - ORR1A2 LTR MaLR 0 327 1 1 1134 450 0 0 0 chr6 71965578 71965628 -77551409 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1134 343 200 43 0 chr6 71965649 71965714 -77551323 - B4A SINE B4 -43 249 182 1 1134 801 259 76 185 chr6 71965714 71966174 -77550863 - MTD LTR MaLR 0 419 10 1 1134 248 273 35 124 chr6 71966250 71966281 -77550756 - B3 SINE B2 -113 103 1 1 1134 291 275 12 24 chr6 71966281 71966363 -77550674 - RSINE1 SINE B4 -83 82 2 1 1134 376 236 117 9 chr6 71966477 71966588 -77550449 + RSINE1 SINE B4 2 124 -41 1 1134 197 108 27 0 chr6 71966590 71966627 -77550410 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1134 605 128 10 0 chr6 71966651 71966753 -77550284 + (GGA)n Simple_repeat Simple_repeat 2 104 0 1 1134 414 177 0 71 chr6 71966769 71966854 -77550183 + RSINE1 SINE B4 25 103 -62 1 1134 888 19 0 0 chr6 71967329 71967435 -77549602 + (TC)n Simple_repeat Simple_repeat 1 106 0 1 1134 207 0 0 0 chr6 71967435 71967457 -77549580 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1134 521 216 0 57 chr6 71968091 71968214 -77548823 - B3 SINE B2 0 216 101 1 1134 289 130 66 115 chr6 71968553 71968614 -77548423 - B1_Mus2 SINE Alu -52 97 40 1 1134 511 164 0 0 chr6 71968616 71968838 -77548199 + CT-rich Low_complexity Low_complexity 1 222 0 1 1134 279 0 0 0 chr6 71969894 71969925 -77547112 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 1 1134 903 233 5 72 chr6 71970043 71970265 -77546772 + B3 SINE B2 5 211 -5 1 1134 662 91 10 0 chr6 71970604 71970703 -77546334 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 1 1134 358 386 19 75 chr6 71970888 71971101 -77545936 - MLT1K LTR MaLR -359 236 36 1 1134 320 70 0 0 chr6 71971289 71971332 -77545705 - 4.5SRNA scRNA scRNA -51 43 1 1 1134 8810 74 56 2 chr6 71971332 71972434 -77544603 + Lx3_Mus LINE L1 5731 6871 -138 1 1134 189 0 0 0 chr6 71972434 71972455 -77544582 + (GGGTG)n Simple_repeat Simple_repeat 4 24 0 1 1134 8810 74 56 2 chr6 71972455 71972548 -77544489 + Lx3_Mus LINE L1 6872 6988 -21 1 1134 360 304 60 7 chr6 71972553 71972590 -77544447 + L1MEg LINE L1 1954 1991 -4251 1 1134 825 206 14 0 chr6 71972590 71972736 -77544301 + B1_Mur1 SINE Alu 2 149 0 1 1134 505 346 77 24 chr6 71972736 71973157 -77543880 + L1MEg LINE L1 880 1300 -1207 1 1134 721 248 0 13 chr6 71973267 71973426 -77543611 - B4 SINE B4 -93 199 43 1 1134 189 0 0 0 chr6 71973754 71973775 -77543262 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 1 1134 353 316 100 22 chr6 71974444 71974724 -77542313 + L1M4b LINE L1 1911 2221 -5113 1 1134 270 283 40 71 chr6 71975006 71975105 -77541932 - MLT1A LTR MaLR -236 138 43 1 1134 658 113 0 17 chr6 71975335 71975452 -77541585 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 1 1134 565 284 14 7 chr6 71975860 71976002 -77541035 + B1_Mur1 SINE Alu 1 143 -6 1 1134 36 53 0 0 chr6 71976143 71976200 -77540837 + AT_rich Low_complexity Low_complexity 1 57 0 1 1134 635 211 70 0 chr6 71976207 71976349 -77540688 - RSINE1 SINE B4 -11 154 3 1 1134 304 345 18 9 chr6 71977669 71977783 -77539254 + PB1D10 SINE Alu 3 117 0 1 1134 877 277 130 93 chr6 71978737 71979015 -77538022 + MTEb LTR MaLR 1 295 -84 1 1134 4728 48 16 0 chr6 71979015 71979584 -77537453 - L1_Mus1 LINE L1 0 6567 5990 1 1134 877 277 130 93 chr6 71979584 71979659 -77537378 + MTEb LTR MaLR 296 367 -12 1 1134 235 285 184 28 chr6 71979844 71979985 -77537052 - MLT1J-int LTR MaLR -538 849 687 1 1134 1055 231 5 9 chr6 71979989 71980203 -77536834 + ID_B1 SINE B4 12 224 0 1 1134 39260 50 14 14 chr6 71980578 71987135 -77529902 - L1Md_A LINE L1 0 6582 98 1 1134 395 282 43 31 chr6 71987171 71987332 -77529705 - L1ME3A LINE L1 -319 5854 5692 1 1134 509 296 51 34 chr6 71987379 71987554 -77529483 + ORR1E LTR MaLR 13 190 -169 1 1134 228 143 119 0 chr6 71987662 71987704 -77529333 + ORR1E LTR MaLR 322 368 -11 1 1134 248 325 12 0 chr6 71988002 71988082 -77528955 - MLT2B3 LTR ERVL -471 83 3 1 1134 859 193 0 7 chr6 71988089 71988235 -77528802 + B1_Mur3 SINE Alu 5 149 0 1 1134 432 256 1 14 chr6 71988258 71988362 -77528675 - MLT1G LTR MaLR 0 591 449 1 1134 492 181 47 9 chr6 71988391 71988497 -77528540 + ORR1C2 LTR MaLR 3 112 -272 1 1134 411 123 0 15 chr6 71988543 71988609 -77528428 + ORR1C2-int LTR MaLR 1425 1489 -20 1 1134 1871 151 29 127 chr6 71988617 71988644 -77528393 + ORR1C2 LTR MaLR 8 34 -350 1 1134 5882 57 73 0 chr6 71988644 71989396 -77527641 - RLTR13C2 LTR ERVK 0 808 2 1 1134 1871 151 29 127 chr6 71989396 71989786 -77527251 + ORR1C2 LTR MaLR 35 384 0 1 1134 1192 245 134 9 chr6 71989786 71990120 -77526917 + MTD LTR MaLR 43 419 0 1 1134 357 349 9 0 chr6 71990169 71990275 -77526762 - MLT1G LTR MaLR -125 466 360 1 1134 331 360 8 8 chr6 71990437 71990563 -77526474 - LTR16B LTR ERVL -5 458 333 1 1134 501 266 9 9 chr6 71990727 71990837 -77526200 - ID_B1 SINE B4 -6 218 109 1 1134 443 279 61 15 chr6 71990837 71990858 -77526179 - B1F1 SINE Alu -6 143 7 1 1134 1254 211 32 163 chr6 71990862 71991304 -77525733 - ORR1C2 LTR MaLR 0 384 1 1 1134 659 117 108 10 chr6 71991304 71991439 -77525598 - ORR1C2-int LTR MaLR 0 1370 1253 1 1134 1289 193 26 4 chr6 71991440 71991710 -77525327 - Lx3C LINE L1 -644 6332 6057 1 1134 1648 143 60 4 chr6 71991701 71991967 -77525070 + Lx3C LINE L1 6347 6627 -349 1 1134 697 193 0 0 chr6 71991969 71992078 -77524959 - B1_Mur4 SINE Alu -31 119 11 1 1134 3407 273 48 81 chr6 71992088 71992856 -77524181 - ORR1C2-int LTR MaLR -136 1234 504 1 1134 2435 120 86 5 chr6 71992856 71993250 -77523787 + RLTR23 LTR ERV1 5 430 0 1 1134 3407 273 48 81 chr6 71993250 71993758 -77523279 - ORR1C2-int LTR MaLR -867 503 1 1 1134 509 118 0 0 chr6 71993758 71993834 -77523203 - ORR1C2 LTR MaLR 0 367 292 1 1134 384 252 36 36 chr6 71993833 71993944 -77523093 + MER20 DNA MER1_type 104 214 -5 1 1134 313 186 0 17 chr6 71994865 71994925 -77522112 + B4A SINE B4 1 59 -233 1 1134 1097 171 59 41 chr6 71994974 71995194 -77521843 + MTD LTR MaLR 188 411 -8 1 1134 1122 281 171 12 chr6 71995203 71995807 -77521230 + L1MC3 LINE L1 7029 7728 -57 1 1134 421 222 0 12 chr6 71995813 71995895 -77521142 + ID4_ SINE ID 3 83 0 1 1134 994 208 94 136 chr6 71995924 71996285 -77520752 + RLTR9C LTR ERVK 1 346 -47 1 1134 395 0 0 163 chr6 71996290 71996505 -77520532 + (CAGAG)n Simple_repeat Simple_repeat 1 180 0 1 1134 232 200 68 78 chr6 71996506 71996609 -77520428 + RLTR25B LTR ERVK 397 498 -530 1 1134 504 127 0 0 chr6 71996550 71996621 -77520416 + B1_Mur4 SINE Alu 43 113 -37 1 1134 778 256 37 56 chr6 71996777 71996992 -77520045 + B4A SINE B4 82 292 0 1 1134 741 190 7 7 chr6 71997072 71997215 -77519822 + B1_Mur3 SINE Alu 2 144 -5 1 1134 1160 47 0 44 chr6 71997219 71997399 -77519638 + (GGGGA)n Simple_repeat Simple_repeat 5 176 0 1 1134 594 0 0 0 chr6 71997399 71997464 -77519573 + (GAGAA)n Simple_repeat Simple_repeat 1 66 0 1 1134 553 271 39 8 chr6 71997514 71997644 -77519393 + RSINE1 SINE B4 1 134 -31 1 1134 387 0 0 0 chr6 71997961 71998004 -77519033 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1134 1878 180 11 114 chr6 71998004 71998469 -77518568 + MTC LTR MaLR 5 421 0 1 1134 510 292 18 42 chr6 71998976 71999144 -77517893 + RSINE1 SINE B4 2 165 0 1 1134 817 149 0 29 chr6 71999247 71999385 -77517652 + B3 SINE B2 82 215 -1 1 1134 900 209 46 5 chr6 71999443 71999640 -77517397 - B3 SINE B2 -10 206 2 1 1134 455 312 80 0 chr6 71999676 71999801 -77517236 + RSINE1 SINE B4 2 136 -29 1 1134 272 370 65 23 chr6 72000231 72000447 -77516590 + L2b LINE L2 2922 3146 -229 1 1134 506 254 49 8 chr6 72000449 72000572 -77516465 - ID_B1 SINE B4 -3 221 94 2 1134 207 0 0 0 chr6 72001168 72001191 -77515846 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1134 414 234 151 67 chr6 72001576 72001755 -77515282 + B3A SINE B2 5 198 0 4 1134 912 247 111 34 chr6 72002245 72002542 -77514495 + Lx8 LINE L1 6812 7131 -342 5 1134 1784 222 131 9 chr6 72002627 72003076 -77513961 - RMER20A LTR ERVK -2 514 11 6 1134 33 25 0 0 chr6 72003176 72003216 -77513821 + AT_rich Low_complexity Low_complexity 1 40 0 7 1134 779 181 21 14 chr6 72003220 72003360 -77513677 - B1_Mur2 SINE Alu -8 141 1 8 1134 290 235 8 143 chr6 72003257 72003376 -77513661 - MT2B LTR ERVL -344 257 155 9 1134 453 257 191 0 chr6 72003587 72003723 -77513314 + MTE2b LTR MaLR 7 168 -211 1 1134 474 18 0 0 chr6 72004021 72004076 -77512961 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1134 555 250 69 50 chr6 72004102 72004262 -77512775 - B4A SINE B4 -46 246 84 1 1134 1199 130 40 0 chr6 72004278 72004455 -77512582 + B2_Mm2 SINE B2 4 187 -8 1 1134 551 254 163 16 chr6 72004464 72004648 -77512389 - B3 SINE B2 -1 215 5 1 1134 362 231 64 0 chr6 72004648 72004726 -77512311 - B4A SINE B4 -199 93 11 1 1134 575 257 60 0 chr6 72004794 72004949 -77512088 + MTE2b LTR MaLR 202 376 -3 1 1134 512 269 30 7 chr6 72004970 72005105 -77511932 - MTEa LTR MaLR -241 138 1 1 1134 600 287 0 13 chr6 72005157 72005316 -77511721 + RSINE1 SINE B4 3 159 -6 1 1134 335 141 0 15 chr6 72005339 72005404 -77511633 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1134 277 314 64 23 chr6 72005664 72005874 -77511163 - MIRb SINE MIR -26 242 23 1 1134 1788 55 8 33 chr6 72005874 72006118 -77510919 + ORR1A2 LTR MaLR 90 327 0 1 1134 608 273 36 12 chr6 72006129 72006296 -77510741 + ID_B1 SINE B4 47 217 -7 2 1134 1127 226 136 40 chr6 72006880 72007226 -77509811 - MTE2b LTR MaLR 0 379 1 2 1134 223 274 65 52 chr6 72007464 72007511 -77509526 - B3 SINE B2 -135 81 30 2 1134 896 213 312 66 chr6 72007511 72007963 -77509074 - RMER2 LTR ERV1 -4 563 1 2 1134 223 274 65 52 chr6 72007963 72007992 -77509045 - B3 SINE B2 -187 29 4 2 1134 198 186 65 65 chr6 72008027 72008073 -77508964 - MIR SINE MIR -113 95 50 2 1134 402 238 0 0 chr6 72009118 72009191 -77507846 - RMER21B LTR ERV1 -5 837 765 2 1134 3654 141 164 76 chr6 72009191 72009954 -77507083 - RMER21A LTR ERV1 0 947 118 2 1134 279 0 0 0 chr6 72009958 72009989 -77507048 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1134 750 259 56 38 chr6 72010001 72010214 -77506823 - MTE2a LTR MaLR -55 324 108 2 1134 337 111 0 0 chr6 72011039 72011093 -77505944 - MMVL30-int LTR ERV1 -2871 827 774 2 1134 243 0 0 0 chr6 72011429 72011456 -77505581 + (CAGA)n Simple_repeat Simple_repeat 1 27 0 3 1134 4352 129 34 50 chr6 72012138 72012767 -77504270 - MMVL30-int LTR ERV1 -93 3605 2982 3 1134 1205 55 7 0 chr6 72012767 72012913 -77504124 - B1_Mus1 SINE Alu 0 148 2 3 1134 4352 281 93 79 chr6 72012913 72013973 -77503064 - MMVL30-int LTR ERV1 -717 2981 2874 3 1134 3974 120 84 34 chr6 72013948 72014649 -77502388 - MMVL30-int LTR ERV1 -1467 2231 1496 3 1134 426 173 18 55 chr6 72015831 72015941 -77501096 - MMVL30-int LTR ERV1 -2245 1054 949 3 1134 594 0 0 0 chr6 72015959 72016025 -77501012 + (TTTC)n Simple_repeat Simple_repeat 1 66 0 3 1134 337 111 0 0 chr6 72016369 72016423 -77500614 - MMVL30-int LTR ERV1 -2871 827 774 3 1134 207 0 0 0 chr6 72016759 72016782 -77500255 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 3 1134 414 0 0 0 chr6 72017440 72017486 -77499551 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1134 1534 121 43 8 chr6 72017488 72017722 -77499315 - Lx4A LINE L1 -1 7057 6816 3 1134 587 250 25 0 chr6 72017725 72017845 -77499192 - RMER21A LTR ERV1 -824 123 1 3 1134 2938 189 41 23 chr6 72017877 72018043 -77498994 + RMER15 LTR ERVL 1 177 -398 3 1134 2674 111 30 2 chr6 72018043 72018439 -77498598 - MTB_Mm LTR MaLR 0 407 1 3 1134 2938 189 41 23 chr6 72018439 72018836 -77498201 + RMER15 LTR ERVL 178 574 -1 3 1134 699 270 0 0 chr6 72018966 72019140 -77497897 - L1MA4A LINE L1 -376 5927 5754 4 1134 296 350 88 106 chr6 72019669 72019987 -77497050 - ORR1E LTR MaLR -17 342 31 4 1134 1931 141 121 25 chr6 72019987 72020350 -77496687 - MTB_Mm LTR MaLR 0 407 10 4 1134 2080 144 9 12 chr6 72020315 72020652 -77496385 - RMER19B LTR ERVK -566 336 1 4 1134 308 358 71 50 chr6 72020865 72020917 -77496120 - MLT1A0 LTR MaLR -19 346 299 4 1134 198 0 0 0 chr6 72020917 72020939 -77496098 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 4 1134 308 358 71 50 chr6 72020939 72021027 -77496010 - MLT1A0 LTR MaLR -67 298 203 4 1134 227 299 0 15 chr6 72021054 72021122 -77495915 + GA-rich Low_complexity Low_complexity 3 69 0 4 1134 278 258 90 0 chr6 72021246 72021335 -77495702 - MLT1A0 LTR MaLR -311 97 1 4 1134 253 331 67 56 chr6 72021847 72022026 -77495011 - MER21B LTR ERV1 -154 709 529 4 1134 638 275 6 39 chr6 72022108 72022286 -77494751 - B3A SINE B2 0 198 27 4 1134 1070 110 152 23 chr6 72022350 72022527 -77494510 + URR1A DNA MER1_type 1 200 -26 4 1134 30 0 0 0 chr6 72022910 72022940 -77494097 + AT_rich Low_complexity Low_complexity 1 30 0 5 1134 378 0 0 0 chr6 72024396 72024438 -77492599 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1134 432 303 33 40 chr6 72024552 72024703 -77492334 - MER77 LTR ERVL -412 195 46 5 1134 408 234 26 0 chr6 72024978 72025055 -77491982 - RSINE1 SINE B4 -13 152 74 5 1134 800 219 19 107 chr6 72025658 72025863 -77491174 + ID_B1 SINE B4 2 188 -36 5 1134 231 348 17 51 chr6 72025816 72025934 -77491103 - MER45R DNA Tip100 -1450 131 18 5 1134 1237 223 141 18 chr6 72025935 72026269 -77490768 + MTE2a LTR MaLR 3 377 -2 5 1134 720 261 84 31 chr6 72026976 72027279 -77489758 - MTEb LTR MaLR 0 379 1 5 1134 1035 211 9 51 chr6 72028009 72028102 -77488935 + B4 SINE B4 1 84 -208 5 1134 354 329 19 76 chr6 72028102 72028260 -77488777 + B1F2 SINE Alu 1 149 0 5 1134 253 392 0 0 chr6 72028269 72028348 -77488689 + B4 SINE B4 214 292 0 6 1134 269 202 145 111 chr6 72028704 72028821 -77488216 + HAL1 LINE L1 613 733 -1774 6 1134 546 257 179 65 chr6 72028900 72029162 -77487875 + B4A SINE B4 1 292 0 6 1134 2706 99 65 5 chr6 72029187 72029603 -77487434 - BGLII_B LTR ERVK 0 441 1 6 1134 1020 138 79 0 chr6 72029603 72029806 -77487231 - MYSERV16_I-int LTR ERVK 0 2326 2108 6 1134 2994 113 2 0 chr6 72029819 72030244 -77486793 + Lx2 LINE L1 6085 6510 -487 6 1134 2729 117 103 23 chr6 72030248 72030722 -77486315 + MURVY-LTR LTR ERV1 8 519 0 6 1134 2916 121 30 50 chr6 72030722 72031226 -77485811 + Lx2 LINE L1 6504 6997 0 6 1134 449 243 52 0 chr6 72032275 72032385 -77484652 - B1F SINE Alu -2 118 1 6 1134 810 255 50 30 chr6 72032415 72032617 -77484420 - B3 SINE B2 -1 215 10 6 1134 648 310 0 42 chr6 72033171 72033363 -77483674 + B4 SINE B4 1 184 -108 6 1134 480 86 0 0 chr6 72033363 72033433 -77483604 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1134 489 34 0 0 chr6 72033451 72033510 -77483527 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 7 1134 997 142 6 40 chr6 72033523 72033641 -77483396 + RMER15 LTR ERVL 368 485 -90 7 1134 1817 115 120 179 chr6 72033641 72033769 -77483268 + RLTR23 LTR ERV1 1 83 -347 7 1134 1166 102 0 6 chr6 72033769 72033946 -77483091 + (GAA)n Simple_repeat Simple_repeat 3 178 0 7 1134 1817 115 120 179 chr6 72033946 72034274 -77482763 + RLTR23 LTR ERV1 84 430 0 7 1134 997 142 6 40 chr6 72034274 72034331 -77482706 + RMER15 LTR ERVL 486 537 -38 7 1134 403 253 0 0 chr6 72034326 72034401 -77482636 - RSINE1 SINE B4 -87 78 4 7 1134 304 305 22 22 chr6 72034402 72034536 -77482501 + MER113A DNA MER1_type 180 313 -1 7 1134 914 232 62 111 chr6 72034734 72034773 -77482264 - MTE2b LTR MaLR -1 378 337 7 1134 183 42 0 0 chr6 72034773 72034797 -77482240 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 7 1134 914 232 62 111 chr6 72034797 72035078 -77481959 - MTE2b LTR MaLR -43 336 76 7 1134 1086 65 0 0 chr6 72035078 72035217 -77481820 + B2_Mm2 SINE B2 2 140 -55 7 1134 1796 149 119 12 chr6 72035413 72035733 -77481304 + ORR1B1 LTR MaLR 41 394 0 7 1134 343 231 0 0 chr6 72035798 72035863 -77481174 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 8 1134 385 260 0 10 chr6 72035806 72035903 -77481134 + BC1_Mm scRNA scRNA 16 111 -41 8 1134 2283 108 38 0 chr6 72035932 72036246 -77480791 - ORR1A3 LTR MaLR 0 326 1 8 1134 489 34 0 0 chr6 72036264 72036323 -77480714 + (TA)n Simple_repeat Simple_repeat 2 60 0 8 1134 318 340 58 72 chr6 72036352 72036628 -77480409 + L1ME3A LINE L1 5877 6148 -25 8 1134 541 302 186 24 chr6 72036676 72036924 -77480113 - B4A SINE B4 -2 290 3 8 1134 861 229 24 19 chr6 72037063 72037272 -77479765 - B3 SINE B2 -6 210 1 8 1134 517 288 98 98 chr6 72038233 72038289 -77478748 - MLT1E1A LTR MaLR -8 672 620 8 1134 752 236 16 138 chr6 72038289 72038535 -77478502 + B3 SINE B2 1 216 0 8 1134 517 288 98 98 chr6 72038535 72038744 -77478293 - MLT1E1A LTR MaLR -61 619 407 8 1134 1367 78 11 0 chr6 72039310 72039489 -77477548 + B2_Mm2 SINE B2 1 181 -14 8 1134 399 41 0 0 chr6 72039493 72039542 -77477495 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 1134 569 265 36 22 chr6 72039547 72039686 -77477351 + RMER1A Other Other 54 194 -836 9 1134 758 262 27 62 chr6 72039918 72040142 -77476895 - B4 SINE B4 -43 249 34 9 1134 1197 48 0 13 chr6 72040269 72040418 -77476619 + B1_Mm SINE Alu 1 147 0 9 1134 849 101 0 53 chr6 72040434 72040495 -77476542 + polypurine Low_complexity Low_complexity 2 54 0 9 1134 1116 133 0 0 chr6 72040495 72040675 -77476362 + (GGA)n Simple_repeat Simple_repeat 1 180 0 9 1134 849 101 0 53 chr6 72040675 72040801 -77476236 + polypurine Low_complexity Low_complexity 55 179 0 9 1134 1347 72 0 0 chr6 72040802 72040982 -77476055 + (GAA)n Simple_repeat Simple_repeat 1 180 0 9 1134 628 207 17 0 chr6 72041883 72041999 -77475038 - PB1D9 SINE Alu -1 119 2 9 1134 537 269 142 90 chr6 72042015 72042227 -77474810 - ID_B1 SINE B4 0 224 2 9 1134 343 237 7 169 chr6 72042706 72042848 -77474189 + B1F1 SINE Alu 2 120 -29 1 1134 195 42 0 0 chr6 72043037 72043061 -77473976 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1134 807 141 52 7 chr6 72043503 72043639 -77473398 + B1_Mur4 SINE Alu 2 143 -7 1 1134 443 300 19 26 chr6 72043511 72043665 -77473372 + B4A SINE B4 94 246 -46 1 1134 24 53 0 0 chr6 72043693 72043731 -77473306 + AT_rich Low_complexity Low_complexity 1 38 0 1 1134 510 258 68 0 chr6 72043735 72043867 -77473170 + B1_Mur1 SINE Alu 4 144 -5 1 1134 693 250 135 16 chr6 72044029 72044281 -77472756 + B4A SINE B4 1 282 -10 1 1134 423 56 0 0 chr6 72044321 72044375 -77472662 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1134 1019 108 0 0 chr6 72044516 72044655 -77472382 + B1_Mus1 SINE Alu 1 139 -9 1 1134 308 43 22 0 chr6 72044656 72044702 -77472335 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 1 1134 748 145 17 0 chr6 72044790 72044907 -77472130 - B3 SINE B2 -1 215 97 1 1134 656 235 6 38 chr6 72044956 72045115 -77471922 - ID_B1 SINE B4 -2 222 69 1 1134 332 302 12 0 chr6 72045151 72045237 -77471800 - Charlie1b DNA MER1_type -424 99 13 1 1134 1035 120 0 29 chr6 72046952 72047124 -77469913 - URR1B DNA MER1_type -1 224 58 1 1134 26 50 0 0 chr6 72047628 72047668 -77469369 + GC_rich Low_complexity Low_complexity 1 40 0 1 1134 255 140 0 0 chr6 72049225 72049275 -77467762 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 1 1134 445 242 139 16 chr6 72049279 72049401 -77467636 - ID_B1 SINE B4 -7 217 81 1 1134 1915 186 80 28 chr6 72049681 72050079 -77466958 + MTD LTR MaLR 1 419 0 1 1134 518 0 16 0 chr6 72050237 72050299 -77466738 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1134 444 259 8 72 chr6 72050564 72050689 -77466348 + ID_B1 SINE B4 94 210 -14 1 1134 378 0 0 0 chr6 72050698 72050740 -77466297 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1134 588 222 86 0 chr6 72050740 72050857 -77466180 + RSINE1 SINE B4 2 128 -37 1 1134 263 227 76 76 chr6 72051884 72051989 -77465048 - PB1D10 SINE Alu -3 114 10 1 1134 303 259 23 23 chr6 72052309 72052396 -77464641 - MER33 DNA MER1_type -2 322 236 1 1134 706 266 22 17 chr6 72052398 72052578 -77464459 + B3A SINE B2 1 181 -17 1 1134 555 245 33 59 chr6 72052613 72052765 -77464272 + RSINE1 SINE B4 4 151 -14 1 1134 513 44 0 0 chr6 72052767 72052835 -77464202 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1134 264 277 62 81 chr6 72052873 72053034 -77464003 - MER33 DNA MER1_type -65 259 102 1 1134 368 283 147 33 chr6 72053099 72053249 -77463788 - MIR SINE MIR -50 212 46 1 1134 290 299 0 0 chr6 72054186 72054263 -77462774 + L2c LINE L2 3299 3375 -12 1 1134 629 216 44 7 chr6 72054451 72054586 -77462451 + MER105 DNA DNA 1 140 -64 1 1134 365 255 152 32 chr6 72054794 72054952 -77462085 + B4A SINE B4 3 179 -113 1 1134 1167 82 0 0 chr6 72055312 72055459 -77461578 - B1_Mus2 SINE Alu 0 147 1 1 1134 1286 186 5 0 chr6 72055490 72055700 -77461337 - B3 SINE B2 -5 211 1 1 1134 1430 174 132 58 chr6 72055924 72055942 -77461095 + ORR1D1 LTR MaLR 1 18 -356 1 1134 186 43 0 0 chr6 72055942 72055965 -77461072 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1134 1430 174 132 58 chr6 72055965 72056294 -77460743 + ORR1D1 LTR MaLR 19 373 -1 1 1134 1272 289 107 44 chr6 72056345 72056998 -77460039 + L1MC4 LINE L1 7343 8036 -6 1 1134 387 299 31 26 chr6 72057444 72057593 -77459444 + PB1D10 SINE Alu 6 143 -4 1 1134 297 161 32 0 chr6 72057648 72057710 -77459327 - Lx8 LINE L1 -3 7470 7407 1 1134 297 51 0 0 chr6 72058097 72058136 -77458901 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1134 827 110 80 7 chr6 72058613 72058750 -77458287 + B1_Mur3 SINE Alu 1 147 -2 1 1134 306 106 0 0 chr6 72058750 72058797 -77458240 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 1 1134 259 191 21 0 chr6 72060130 72060177 -77456860 + MER20 DNA MER1_type 18 65 -154 1 1134 612 252 52 0 chr6 72060204 72060359 -77456678 - RSINE1 SINE B4 0 165 3 1 1134 673 250 57 33 chr6 72060387 72060527 -77456510 - B3 SINE B2 0 216 71 1 1134 408 55 0 0 chr6 72060527 72060582 -77456455 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1134 673 250 57 33 chr6 72060582 72060652 -77456385 - B3 SINE B2 -146 70 1 1 1134 324 0 0 0 chr6 72060840 72060876 -77456161 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1134 577 215 103 7 chr6 72061230 72061366 -77455671 - B1F SINE Alu 0 149 1 1 1134 286 252 95 83 chr6 72062450 72062619 -77454418 - L1MA8 LINE L1 -284 6007 5837 1 1134 247 268 55 39 chr6 72063112 72063210 -77453827 - PB1D7 SINE Alu -6 111 5 1 1134 478 229 0 10 chr6 72063470 72063565 -77453472 - MTC LTR MaLR -7 414 321 1 1134 1165 214 154 175 chr6 72063565 72064109 -77452928 - MT2A LTR ERVL 0 533 1 1 1134 1589 167 73 3 chr6 72064109 72064390 -77452647 - MTC LTR MaLR -95 326 26 1 1134 300 292 8 32 chr6 72065678 72065802 -77451235 - L1MD1 LINE L1 -192 6050 5930 1 1134 401 271 0 63 chr6 72065810 72065936 -77451101 + RSINE1 SINE B4 2 119 -46 1 1134 451 264 32 83 chr6 72065934 72065950 -77451087 + B4 SINE B4 74 89 -203 1 1134 461 62 15 0 chr6 72065950 72066015 -77451022 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1 1134 451 264 32 83 chr6 72066015 72066155 -77450882 + B4 SINE B4 90 222 -70 1 1134 759 225 14 0 chr6 72066016 72066158 -77450879 + B1_Mur3 SINE Alu 6 149 0 1 1134 2008 106 114 16 chr6 72066515 72066832 -77450205 + ORR1B1 LTR MaLR 47 394 0 1 1134 289 232 14 28 chr6 72066840 72066911 -77450126 + CT-rich Low_complexity Low_complexity 2 71 0 1 1134 408 71 0 0 chr6 72066919 72066975 -77450062 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1134 632 263 23 0 chr6 72066981 72067114 -77449923 - B3A SINE B2 -42 156 21 1 1134 348 277 114 63 chr6 72067539 72067697 -77449340 - MTE2b LTR MaLR -160 219 54 1 1134 1027 301 141 10 chr6 72067754 72068166 -77448871 - MTE-int LTR MaLR -9 1571 1106 1 1134 524 292 108 72 chr6 72068209 72068641 -77448396 - MTE-int LTR MaLR -719 539 122 1 1134 224 30 30 0 chr6 72068759 72068792 -77448245 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1134 1218 41 0 7 chr6 72068878 72069025 -77448012 + B1_Mm SINE Alu 2 147 0 1 1134 429 44 0 42 chr6 72069030 72069101 -77447936 + (GGA)n Simple_repeat Simple_repeat 3 70 0 1 1134 270 0 0 0 chr6 72069130 72069160 -77447877 + (CCA)n Simple_repeat Simple_repeat 2 31 0 1 1134 400 248 5 1 chr6 72069237 72069329 -77447708 - PB1D10 SINE Alu -9 108 18 1 1134 226 280 36 99 chr6 72069393 72069406 -77447631 + MT2B2 LTR ERVL 152 157 -427 1 1134 494 218 45 0 chr6 72069406 72069516 -77447521 + B1F1 SINE Alu 1 115 -34 1 1134 258 203 91 30 chr6 72069554 72069620 -77447417 + ID SINE ID 1 70 -154 1 1134 1384 213 128 27 chr6 72069774 72070141 -77446896 - MTD LTR MaLR -8 411 8 1 1134 489 267 250 27 chr6 72070198 72070494 -77446543 - RMER5 LTR ERV1 -120 414 53 1 1134 180 280 0 20 chr6 72071133 72071184 -77445853 + L2 LINE L2 2982 3031 -388 1 1134 958 209 116 97 chr6 72071310 72071639 -77445398 - RLTR19-int LTR ERVK -1766 4371 4037 1 1134 195 129 0 0 chr6 72071728 72071759 -77445278 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1134 2796 245 78 113 chr6 72071789 72073334 -77443703 - RLTR19-int LTR ERVK -2171 3966 2476 1 1134 369 187 76 93 chr6 72073334 72073452 -77443585 + MT2B LTR ERVL 135 250 -351 1 1134 614 132 38 0 chr6 72073366 72073472 -77443565 + PB1D9 SINE Alu 11 120 0 1 1134 303 269 39 0 chr6 72073479 72073583 -77443454 - RLTR19-int LTR ERVK -3680 2457 2350 1 1134 800 201 104 46 chr6 72073589 72073829 -77443208 - RLTR19-int LTR ERVK -3399 2123 1870 1 1134 1427 278 57 82 chr6 72074028 72074259 -77442778 - MTC-int LTR MaLR -31 1227 1003 1 1134 186 43 0 0 chr6 72074259 72074282 -77442755 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 1134 1427 235 127 93 chr6 72074282 72074659 -77442378 - MTC-int LTR MaLR -256 1002 466 1 1134 418 210 56 123 chr6 72074659 72074838 -77442199 - RLTR19-int LTR ERVK -4977 1160 994 1 1134 402 259 86 33 chr6 72074826 72074978 -77442059 - RLTR42-int LTR ERVK -3727 1795 1636 1 1134 764 237 94 5 chr6 72075160 72075372 -77441665 - RLTR42-int LTR ERVK -4184 1338 1108 1 1134 515 286 48 38 chr6 72076627 72076871 -77440166 - MLT1J LTR MaLR -226 218 17 1 1134 462 36 0 0 chr6 72077020 72077076 -77439961 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1134 801 34 244 8 chr6 72077185 72077304 -77439733 - B1_Mus1 SINE Alu 0 148 2 1 1134 300 27 0 0 chr6 72077490 72077527 -77439510 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1134 384 22 0 0 chr6 72077563 72077608 -77439429 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1134 597 293 0 0 chr6 72077633 72077766 -77439271 - RSINE1 SINE B4 -31 134 2 1 1134 315 231 59 0 chr6 72077921 72078017 -77439020 - PB1D10 SINE Alu -1 119 6 1 1134 258 286 0 0 chr6 72077962 72078025 -77439012 - ID_B1 SINE B4 -83 141 79 1 1134 189 315 82 0 chr6 72078147 72078220 -77438817 - L3 LINE CR1 -3344 1145 1067 1 1134 455 209 0 9 chr6 72078827 72078943 -77438094 + CT-rich Low_complexity Low_complexity 2 116 0 1 1134 411 98 0 0 chr6 72078965 72079026 -77438011 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1134 693 175 16 24 chr6 72079051 72079174 -77437863 - RSINE1 SINE B4 -41 124 3 1 1134 256 304 203 56 chr6 72079225 72079368 -77437669 - RSINE1 SINE B4 -1 164 1 1 1134 245 274 158 0 chr6 72079414 72079509 -77437528 + PB1D10 SINE Alu 1 110 -7 1 1134 714 297 33 0 chr6 72079817 72079999 -77437038 + ID_B1 SINE B4 34 221 -3 1 1134 759 256 59 39 chr6 72080026 72080173 -77436864 + B4 SINE B4 85 232 -60 1 1134 538 213 49 21 chr6 72080173 72080317 -77436720 + RSINE1 SINE B4 2 149 -16 1 1134 759 256 59 39 chr6 72080317 72080372 -77436665 + B4 SINE B4 233 291 -1 1 1134 604 216 9 0 chr6 72080772 72080888 -77436149 + B3 SINE B2 100 216 0 1 1134 863 152 13 27 chr6 72081007 72081156 -77435881 + B1_Mur2 SINE Alu 2 148 -1 1 1134 241 231 0 0 chr6 72081207 72081259 -77435778 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1134 519 211 72 16 chr6 72081344 72081469 -77435568 - B3 SINE B2 -11 205 74 2 1134 433 174 435 0 chr6 72081803 72081920 -77435117 - URR1B DNA MER1_type 0 225 58 2 1134 542 224 62 8 chr6 72082271 72082400 -77434637 - MTD LTR MaLR -17 402 276 2 1134 556 241 54 54 chr6 72082452 72082619 -77434418 - MTD LTR MaLR -149 270 104 2 1134 280 340 65 65 chr6 72082587 72082757 -77434280 - MTA_Mm LTR MaLR -226 170 1 2 1134 1408 234 40 153 chr6 72082969 72083447 -77433590 - RLTR18B LTR ERVK -5 507 84 2 1134 212 59 0 29 chr6 72084008 72084031 -77433006 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1134 237 33 0 0 chr6 72084031 72084061 -77432976 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1134 212 59 0 29 chr6 72084061 72084072 -77432965 + (TG)n Simple_repeat Simple_repeat 1 11 0 2 1134 906 131 13 27 chr6 72084227 72084376 -77432661 - B1_Mus2 SINE Alu 0 147 1 2 1134 1186 191 10 5 chr6 72084376 72084576 -77432461 - B3 SINE B2 -15 201 1 2 1134 645 253 156 7 chr6 72085210 72085485 -77431552 - L1MB7 LINE L1 -9 6175 5860 2 1134 365 243 203 14 chr6 72085836 72085974 -77431063 - RSINE1 SINE B4 0 165 2 2 1134 245 250 95 27 chr6 72086191 72086265 -77430772 - B4A SINE B4 -154 138 60 2 1134 22 0 0 0 chr6 72086448 72086470 -77430567 + AT_rich Low_complexity Low_complexity 1 22 0 2 1134 3542 20 2 0 chr6 72087684 72088079 -77428958 - MTA_Mm LTR MaLR 0 396 1 2 1134 9350 33 2 1 chr6 72088079 72089176 -77427861 - MTA_Mm-int LTR MaLR 0 1098 1 2 1134 3542 20 2 0 chr6 72089176 72089571 -77427466 - MTA_Mm LTR MaLR 0 396 1 2 1135 292 106 0 0 chr6 72090714 72090761 -77426276 - B1_Mus2 SINE Alu -19 128 82 2 1135 402 274 24 60 chr6 72090858 72091025 -77426012 + RSINE1 SINE B4 4 164 -1 2 1135 411 73 0 0 chr6 72091553 72091608 -77425429 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1135 559 219 73 40 chr6 72091620 72091744 -77425293 - RSINE1 SINE B4 -35 130 3 2 1135 261 319 34 54 chr6 72091787 72091936 -77425101 - L1MB2 LINE L1 -161 6010 5865 2 1135 715 228 70 16 chr6 72093313 72093500 -77423537 - B3A SINE B2 0 198 2 2 1135 243 269 199 34 chr6 72094159 72094305 -77422732 + MIR SINE MIR 81 250 -12 2 1135 481 325 54 73 chr6 72095263 72095522 -77421515 + B4A SINE B4 4 257 -35 2 1135 594 109 0 0 chr6 72095854 72095964 -77421073 + (TG)n Simple_repeat Simple_repeat 2 111 0 2 1135 345 24 0 0 chr6 72096009 72096051 -77420986 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1135 729 110 0 0 chr6 72096096 72096232 -77420805 + (TG)n Simple_repeat Simple_repeat 2 137 0 2 1135 921 111 0 0 chr6 72096277 72096449 -77420588 + (TG)n Simple_repeat Simple_repeat 2 173 0 2 1135 218 267 0 22 chr6 72096652 72096698 -77420339 + B1F1 SINE Alu 3 47 -102 2 1135 180 254 127 0 chr6 72096780 72096835 -77420202 + L4 LINE RTE 1448 1509 -520 2 1135 239 345 115 51 chr6 72097327 72097455 -77419582 + MARNA DNA Mariner 43 182 -404 2 1135 1022 189 86 14 chr6 72097455 72097664 -77419373 + ID_B1 SINE B4 1 224 0 2 1135 239 345 115 51 chr6 72097664 72097831 -77419206 + MARNA DNA Mariner 183 357 -229 2 1135 1157 75 0 0 chr6 72098083 72098229 -77418808 + B1_Mus1 SINE Alu 2 147 -1 2 1135 402 297 0 71 chr6 72098257 72098384 -77418653 + RSINE1 SINE B4 3 120 -45 2 1135 183 42 0 0 chr6 72098390 72098414 -77418623 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1135 1455 134 9 9 chr6 72099259 72099485 -77417552 + URR1A DNA MER1_type 1 226 0 2 1135 419 231 29 0 chr6 72099800 72099904 -77417133 - MER5B DNA MER1_type -67 111 5 2 1135 394 177 0 0 chr6 72100007 72100069 -77416968 - PB1D9 SINE Alu -58 62 1 2 1135 393 22 0 0 chr6 72100168 72100214 -77416823 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 2 1135 1018 195 37 51 chr6 72100230 72100446 -77416591 + B3 SINE B2 1 213 -3 2 1135 184 77 51 0 chr6 72100476 72100515 -77416522 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 2 1135 606 214 64 7 chr6 72100594 72100735 -77416302 - B1F2 SINE Alu 0 149 1 2 1135 635 255 64 0 chr6 72100857 72100998 -77416039 + B3A SINE B2 6 155 -43 2 1135 333 187 0 0 chr6 72100998 72101073 -77415964 + GA-rich Low_complexity Low_complexity 1 75 0 2 1135 860 204 74 21 chr6 72101409 72101599 -77415438 + ID_B1 SINE B4 4 203 -21 2 1135 420 104 0 0 chr6 72101722 72101789 -77415248 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1135 628 188 51 0 chr6 72101789 72101906 -77415131 - RSINE1 SINE B4 -41 124 2 2 1135 184 339 98 8 chr6 72102643 72102765 -77414272 + L3 LINE CR1 3481 3613 -876 2 1135 408 259 18 9 chr6 72102892 72103005 -77414032 + PB1D10 SINE Alu 4 117 0 2 1135 436 204 33 149 chr6 72103017 72103138 -77413899 + RSINE1 SINE B4 59 165 0 2 1135 745 170 14 29 chr6 72103175 72103314 -77413723 + B1_Mur4 SINE Alu 14 150 0 2 1135 28 29 0 0 chr6 72103314 72103349 -77413688 + AT_rich Low_complexity Low_complexity 1 35 0 2 1135 486 0 0 0 chr6 72104339 72104393 -77412644 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1135 1456 144 133 7 chr6 72104754 72105055 -77411982 - ORR1D1 LTR MaLR -35 339 1 2 1135 497 272 166 22 chr6 72105509 72105648 -77411389 - B4 SINE B4 0 292 134 2 1135 549 198 105 14 chr6 72105664 72105926 -77411111 - ORR1D2 LTR MaLR -30 344 1 2 1135 313 233 17 0 chr6 72105934 72105994 -77411043 - B4A SINE B4 -231 61 1 2 1135 860 163 7 33 chr6 72107088 72107240 -77409797 + B1_Mur3 SINE Alu 1 148 -1 2 1135 201 175 0 0 chr6 72107241 72107281 -77409756 + A-rich Low_complexity Low_complexity 1 40 0 2 1135 227 282 28 0 chr6 72107307 72107374 -77409663 - 7SK RNA RNA -38 293 225 2 1135 392 306 71 0 chr6 72107374 72107472 -77409565 + ID_B1 SINE B4 1 105 -119 2 1135 283 137 20 0 chr6 72107474 72107525 -77409512 - URR1B DNA MER1_type -2 223 172 2 1135 551 140 464 7 chr6 72107564 72107715 -77409322 - URR1B DNA MER1_type -2 223 4 2 1135 325 281 12 0 chr6 72107729 72107811 -77409226 + ID_B1 SINE B4 141 223 -1 2 1135 688 219 193 41 chr6 72107893 72108179 -77408858 + ORR1E LTR MaLR 4 340 -39 2 1135 1417 163 203 10 chr6 72108186 72108496 -77408541 - ORR1C1 LTR MaLR -8 370 1 2 1135 273 272 24 24 chr6 72108740 72108806 -77408231 - Tigger7 DNA MER2_type -59 2432 2367 2 1135 1445 206 65 47 chr6 72108806 72109425 -77407612 + RMER19B LTR ERVK 1 902 0 2 1135 986 205 24 9 chr6 72109467 72109679 -77407358 + B3 SINE B2 1 215 -1 2 1135 480 300 31 15 chr6 72109688 72109865 -77407172 - Tigger7 DNA MER2_type -147 192 1 2 1135 552 280 30 0 chr6 72110161 72110293 -77406744 + RSINE1 SINE B4 1 136 -29 2 1135 733 231 101 0 chr6 72110478 72110647 -77406390 - ID_B1 SINE B4 -38 186 1 2 1135 1256 20 7 7 chr6 72110805 72110952 -77406085 - B1_Mm SINE Alu 0 147 1 2 1135 356 301 118 77 chr6 72111591 72111707 -77405330 + MTE2a LTR MaLR 1 234 -145 2 1135 532 324 11 28 chr6 72111707 72111885 -77405152 - B3A SINE B2 0 198 24 2 1135 356 301 118 77 chr6 72111885 72111955 -77405082 + MTE2a LTR MaLR 235 379 0 2 1135 390 91 0 0 chr6 72112078 72112133 -77404904 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1135 288 0 0 0 chr6 72113107 72113139 -77403898 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 2 1135 351 141 0 0 chr6 72113841 72113905 -77403132 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1135 519 60 0 0 chr6 72113955 72114022 -77403015 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1135 383 315 123 41 chr6 72114025 72114293 -77402744 - B4A SINE B4 -1 291 2 2 1135 180 0 0 0 chr6 72115339 72115359 -77401678 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1135 8884 189 42 41 chr6 72115365 72118030 -77399007 + Lx7 LINE L1 4863 7528 -168 2 1135 1445 85 5 0 chr6 72118030 72118219 -77398818 - B2_Mm1a SINE B2 -2 191 2 2 1135 8884 209 36 23 chr6 72118219 72118341 -77398696 + Lx7 LINE L1 7529 7644 -52 2 1135 501 258 0 0 chr6 72118344 72118437 -77398600 - B4A SINE B4 -91 201 109 2 1135 180 111 0 0 chr6 72118439 72118466 -77398571 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1135 1199 172 19 19 chr6 72118475 72118688 -77398349 - MTD LTR MaLR 0 419 207 2 1135 1289 241 53 69 chr6 72118676 72119272 -77397765 - MT2B LTR ERVL -40 561 1 2 1135 316 211 0 53 chr6 72119311 72119406 -77397631 - ORR1A3-int LTR MaLR -1307 656 567 2 1135 256 169 16 63 chr6 72119415 72119478 -77397559 - ORR1A3-int LTR MaLR -1337 626 567 2 1135 2721 145 30 6 chr6 72119478 72119950 -77397087 - MERVL_2A-int LTR ERVL -133 5628 5146 2 1135 1924 198 120 28 chr6 72119952 72120248 -77396789 + RMER20A LTR ERVK 11 333 -183 2 1135 3097 20 6 0 chr6 72120248 72120592 -77396445 - ORR1A1 LTR MaLR 0 346 1 2 1135 1924 198 120 28 chr6 72120592 72120752 -77396285 + RMER20A LTR ERVK 334 509 -7 2 1135 4210 158 62 44 chr6 72120759 72121608 -77395429 - MERVL_2A-int LTR ERVL -607 5154 4290 2 1135 919 157 64 6 chr6 72121599 72121772 -77395265 - MERVL_2A-int LTR ERVL -1793 3968 3786 2 1135 8832 159 35 4 chr6 72121754 72123267 -77393770 - MERVL_2A-int LTR ERVL -1451 4310 2750 2 1135 690 54 47 0 chr6 72123267 72123396 -77393641 + (TA)n Simple_repeat Simple_repeat 1 135 0 2 1135 8832 159 35 4 chr6 72123396 72123433 -77393604 - MERVL_2A-int LTR ERVL -3012 2749 2713 2 1135 247 226 94 0 chr6 72123538 72123644 -77393393 + (CAGCT)n Simple_repeat Simple_repeat 1 116 0 2 1135 8355 132 58 4 chr6 72124024 72125418 -77391619 - MERVL_2A-int LTR ERVL -3042 2719 1251 2 1135 3164 145 27 12 chr6 72125420 72125938 -77391099 + RLTR12B LTR ERVK 3 528 0 2 1135 3687 168 66 1 chr6 72125938 72126622 -77390415 - MERVL_2A-int LTR ERVL -4505 1256 529 2 1135 2790 112 9 7 chr6 72126640 72127086 -77389951 - BGLII LTR ERVK -36 385 1 2 1135 760 278 119 13 chr6 72127086 72127238 -77389799 - Lx9 LINE L1 -47 7597 7417 2 1135 414 0 0 0 chr6 72127238 72127284 -77389753 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1135 760 278 119 13 chr6 72127284 72127510 -77389527 - Lx9 LINE L1 -228 7416 7179 2 1135 834 246 225 17 chr6 72127512 72127801 -77389236 + ORR1E LTR MaLR 8 356 -3 2 1135 213 132 0 0 chr6 72127866 72127904 -77389133 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1135 812 236 22 0 chr6 72128183 72128361 -77388676 + B3A SINE B2 2 183 -15 2 1135 540 0 0 0 chr6 72128373 72128433 -77388604 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 2 1135 678 13 0 0 chr6 72128461 72128540 -77388497 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 2 1135 1250 93 35 0 chr6 72128540 72128712 -77388325 + B2_Mm1t SINE B2 2 179 -14 2 1135 364 96 5 28 chr6 72128802 72128907 -77388130 + B2_Mm2 SINE B2 47 184 -11 2 1135 647 57 11 0 chr6 72128917 72129005 -77388032 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 2 1135 404 293 56 78 chr6 72129033 72129407 -77387630 - L1MCa LINE L1 -4922 1586 1221 2 1135 495 220 0 0 chr6 72129499 72129590 -77387447 - B1_Mur2 SINE Alu -57 92 2 2 1135 602 209 179 30 chr6 72129602 72129770 -77387267 - B3A SINE B2 -4 194 2 2 1135 240 235 103 0 chr6 72129877 72129942 -77387095 + MLT2B3 LTR ERVL 1 72 -484 3 1135 800 272 72 10 chr6 72129942 72130150 -77386887 + ID_B1 SINE B4 1 221 -3 3 1135 574 290 123 15 chr6 72130160 72130506 -77386531 + MLT2B3 LTR ERVL 93 548 -6 3 1135 301 316 32 57 chr6 72130628 72130786 -77386251 - L1MCa LINE L1 -6307 201 48 2 1135 722 250 151 0 chr6 72130839 72131011 -77386026 - ID_B1 SINE B4 -21 203 6 3 1135 1119 257 51 49 chr6 72131454 72131863 -77385174 + RMER15 LTR ERVL 74 572 -3 3 1135 658 188 23 30 chr6 72132318 72132450 -77384587 + RSINE1 SINE B4 4 134 -31 3 1135 218 290 0 97 chr6 72133372 72133457 -77383580 + BC1_Mm scRNA scRNA 4 82 -70 3 1135 1292 96 16 22 chr6 72133457 72133639 -77383398 - B2_Mm2 SINE B2 -14 181 1 3 1135 218 290 0 97 chr6 72133639 72133698 -77383339 + BC1_Mm scRNA scRNA 83 134 -18 3 1135 480 252 49 32 chr6 72133678 72133801 -77383236 + B4 SINE B4 81 205 -87 3 1135 255 125 0 0 chr6 72133821 72133861 -77383176 + (CACG)n Simple_repeat Simple_repeat 4 43 0 3 1135 392 240 29 39 chr6 72134428 72134532 -77382505 + RSINE1 SINE B4 2 104 -61 3 1135 414 295 0 86 chr6 72135380 72135391 -77381646 - ID_B1 SINE B4 -3 221 213 3 1135 753 12 0 0 chr6 72135391 72135477 -77381560 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 3 1135 708 191 0 31 chr6 72135477 72135607 -77381430 - B1_Mur1 SINE Alu -12 137 12 3 1135 321 246 38 130 chr6 72135510 72135641 -77381396 - MT2B LTR ERVL -344 257 139 3 1135 279 0 0 0 chr6 72135679 72135710 -77381327 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1135 515 249 101 21 chr6 72135710 72135899 -77381138 - ID_B1 SINE B4 -18 206 3 3 1135 215 239 37 140 chr6 72136683 72136790 -77380247 - MIR SINE MIR -75 133 37 3 1135 488 158 11 0 chr6 72137409 72137504 -77379533 + GA-rich Low_complexity Low_complexity 1 96 0 3 1135 1178 95 6 0 chr6 72137504 72137683 -77379354 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 1135 301 295 12 37 chr6 72138135 72138216 -77378821 + L1MEg LINE L1 1874 1952 -4132 3 1135 260 191 0 0 chr6 72138229 72138276 -77378761 - Lx8 LINE L1 -2 7471 7425 3 1135 200 219 0 0 chr6 72138326 72138367 -77378670 + (CAT)n Simple_repeat Simple_repeat 3 43 0 3 1135 753 253 135 3 chr6 72138423 72138705 -77378332 - Lx8 LINE L1 -358 7115 6797 3 1135 506 256 8 97 chr6 72140108 72140242 -77376795 - ID_B1 SINE B4 -22 202 81 3 1135 246 130 0 68 chr6 72140440 72140514 -77376523 + C-rich Low_complexity Low_complexity 4 72 0 3 1135 308 248 45 90 chr6 72141445 72141559 -77375478 - L1MD3 LINE L1 -16 7979 7877 3 1135 1793 214 52 25 chr6 72141559 72141943 -77375094 - MTD LTR MaLR 0 419 19 3 1135 452 33 33 0 chr6 72141943 72142004 -77375033 + (CATA)n Simple_repeat Simple_repeat 2 64 0 3 1135 1793 214 52 25 chr6 72142004 72142027 -77375010 - MTD LTR MaLR -401 18 1 3 1135 308 248 45 90 chr6 72142027 72142067 -77374970 - L1MD3 LINE L1 -119 7876 7833 3 1135 682 83 8 8 chr6 72142147 72142268 -77374769 + (TC)n Simple_repeat Simple_repeat 2 122 0 3 1135 284 189 221 0 chr6 72142272 72142367 -77374670 - B1_Mur1 SINE Alu -5 144 29 3 1135 2092 173 8 14 chr6 72142907 72143271 -77373766 - ORR1D1 LTR MaLR -10 364 3 3 1135 1621 186 50 87 chr6 72143288 72143667 -77373370 - MTD LTR MaLR -14 405 41 3 1135 1644 154 117 81 chr6 72143667 72144027 -77373010 + ORR1D1 LTR MaLR 2 374 0 3 1135 1621 186 50 87 chr6 72144027 72144048 -77372989 - MTD LTR MaLR -379 40 20 3 1135 207 0 0 0 chr6 72144048 72144071 -77372966 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1135 271 271 0 14 chr6 72144258 72144329 -77372708 + Charlie17a DNA MER1_type 1 70 -149 3 1135 1573 200 96 35 chr6 72144329 72144723 -77372314 + MTD LTR MaLR 2 419 0 3 1135 1682 26 0 0 chr6 72144743 72144935 -77372102 + B2_Mm1a SINE B2 2 193 0 3 1135 306 0 0 0 chr6 72144973 72145007 -77372030 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1135 252 191 0 0 chr6 72145013 72145055 -77371982 - MLT1A0 LTR MaLR -58 350 309 3 1135 285 271 14 0 chr6 72145061 72145131 -77371906 + ID4 SINE ID 2 72 -11 3 1135 282 115 0 47 chr6 72145161 72145225 -77371812 + GA-rich Low_complexity Low_complexity 3 63 0 3 1135 1057 112 0 27 chr6 72145234 72145417 -77371620 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 3 1135 457 292 220 56 chr6 72145435 72145649 -77371388 - MLT1A0 LTR MaLR -109 256 8 3 1135 417 332 140 20 chr6 72145759 72145959 -77371078 - MLT1J LTR MaLR -54 458 235 3 1135 309 296 93 93 chr6 72146016 72146232 -77370805 - MLT1F1 LTR MaLR -36 533 211 3 1135 1118 160 30 14 chr6 72146341 72146587 -77370450 + ORR1C2 LTR MaLR 1 384 0 3 1135 1106 204 10 0 chr6 72146907 72147103 -77369934 + B3A SINE B2 1 198 0 3 1135 796 245 120 0 chr6 72147408 72147608 -77369429 + ID_B1 SINE B4 1 224 0 3 1135 226 188 21 0 chr6 72147628 72147676 -77369361 + MER117 DNA MER1_type 121 169 -28 3 1135 342 0 0 0 chr6 72147835 72147873 -77369164 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1135 560 225 155 31 chr6 72148032 72148225 -77368812 + ID_B1 SINE B4 1 217 -7 3 1135 256 345 35 9 chr6 72148690 72148804 -77368233 - L2a LINE L2 0 3426 3310 3 1135 207 0 0 0 chr6 72149020 72149043 -77367994 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 3 1135 493 312 136 8 chr6 72149045 72149287 -77367750 + MTB LTR MaLR 126 398 -2 3 1135 1576 246 21 9 chr6 72149287 72149604 -77367433 - MTEa LTR MaLR -58 321 1 3 1135 190 319 42 42 chr6 72149609 72149666 -77367371 - L2a LINE L2 -293 3133 3077 3 1135 1561 224 144 3 chr6 72149666 72150033 -77367004 - MTD LTR MaLR 0 419 1 3 1135 190 319 42 42 chr6 72150033 72150070 -77366967 - L2a LINE L2 -350 3076 3040 3 1135 869 258 5 37 chr6 72150111 72150328 -77366709 + ID_B1 SINE B4 6 215 -9 3 1135 312 27 0 0 chr6 72150328 72150365 -77366672 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1135 335 330 62 70 chr6 72150365 72150393 -77366644 + B4A SINE B4 219 248 -44 3 1135 201 39 0 0 chr6 72150393 72150419 -77366618 + (CAGAGA)n Simple_repeat Simple_repeat 3 28 0 3 1135 258 312 42 21 chr6 72151177 72151272 -77365765 - MIRc SINE MIR -86 182 86 3 1135 21 0 0 0 chr6 72151982 72152003 -77365034 + AT_rich Low_complexity Low_complexity 1 21 0 3 1135 845 171 12 61 chr6 72152015 72152169 -77364868 - B1_Mus1 SINE Alu 0 148 6 3 1135 231 233 260 0 chr6 72152204 72152277 -77364760 - RSINE1 SINE B4 -70 95 4 3 1135 236 250 7 29 chr6 72152319 72152455 -77364582 + CT-rich Low_complexity Low_complexity 5 137 0 3 1135 221 140 0 23 chr6 72153043 72153087 -77363950 - ID4 SINE ID -40 43 1 3 1135 245 280 27 0 chr6 72153121 72153196 -77363841 + MER103 DNA DNA 8 84 -82 3 1135 750 276 10 5 chr6 72153462 72153655 -77363382 - ID_B1 SINE B4 -30 194 1 3 1135 499 284 147 19 chr6 72153698 72153957 -77363080 + B4A SINE B4 1 292 0 3 1135 226 208 27 14 chr6 72153962 72154035 -77363002 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 3 1135 234 62 0 0 chr6 72154050 72154082 -77362955 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1135 180 311 131 0 chr6 72154893 72154954 -77362083 - L4 LINE RTE -1345 684 616 3 1135 743 257 76 32 chr6 72155294 72155479 -77361558 - B3A SINE B2 -5 193 1 3 1135 283 286 131 0 chr6 72155817 72155975 -77361062 + MIRc SINE MIR 18 202 -74 3 1135 203 128 51 0 chr6 72161038 72161077 -77355960 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 3 1135 354 162 0 0 chr6 72161776 72161850 -77355187 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1135 699 244 117 20 chr6 72161982 72162179 -77354858 - ID_B1 SINE B4 -7 217 2 3 1135 405 0 0 0 chr6 72162414 72162459 -77354578 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1135 224 277 23 46 chr6 72162933 72163020 -77354017 + L2a LINE L2 3322 3406 -20 3 1135 590 239 30 0 chr6 72163092 72163169 -77353868 + ID SINE ID 2 82 -142 3 1135 279 298 10 50 chr6 72163169 72163268 -77353769 + B1F1 SINE Alu 1 95 -54 3 1135 243 0 0 0 chr6 72163657 72163684 -77353353 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1135 414 0 0 0 chr6 72163684 72163729 -77353308 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1135 416 156 13 13 chr6 72164997 72165075 -77351962 - B3 SINE B2 -136 80 3 3 1135 242 156 13 147 chr6 72166137 72166212 -77350825 - B4A SINE B4 -36 256 192 3 1135 389 289 10 0 chr6 72166231 72166328 -77350709 - B4A SINE B4 -191 101 4 3 1135 199 265 163 75 chr6 72167435 72167582 -77349455 + MIRb SINE MIR 96 255 -13 3 1135 345 345 63 23 chr6 72167910 72168085 -77348952 - MIRb SINE MIR -71 197 16 3 1135 490 188 0 50 chr6 72170249 72170350 -77346687 - B1F SINE Alu -47 102 7 3 1135 493 252 47 31 chr6 72170390 72170517 -77346520 + RSINE1 SINE B4 4 132 -33 3 1135 448 325 56 56 chr6 72170588 72170911 -77346126 + MLT1A LTR MaLR 21 343 -31 3 1135 231 348 2 8 chr6 72173012 72173134 -77343903 + L2b LINE L2 3051 3170 -205 3 1135 961 155 0 26 chr6 72174346 72174498 -77342539 - B1_Mur1 SINE Alu 0 149 2 3 1135 750 182 0 95 chr6 72174515 72174673 -77342364 + B1_Mus2 SINE Alu 5 147 0 3 1135 599 291 0 0 chr6 72174684 72174825 -77342212 + B1F1 SINE Alu 1 141 -8 3 1135 255 323 62 31 chr6 72174888 72175048 -77341989 + RSINE1 SINE B4 1 165 0 3 1135 447 345 75 30 chr6 72175640 72175840 -77341197 + MER20 DNA MER1_type 1 209 -10 3 1135 594 233 25 50 chr6 72176162 72176361 -77340676 + B3A SINE B2 5 198 0 3 1135 1221 206 9 18 chr6 72176368 72176586 -77340451 + B3 SINE B2 1 216 0 3 1135 591 281 53 77 chr6 72176616 72176703 -77340334 + B4 SINE B4 2 88 -204 3 1135 1153 88 0 0 chr6 72176703 72176850 -77340187 + B1_Mus1 SINE Alu 2 148 0 3 1135 591 281 53 77 chr6 72176850 72176970 -77340067 + B4 SINE B4 89 204 -88 3 1135 441 0 0 0 chr6 72176982 72177031 -77340006 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1135 417 312 11 17 chr6 72177574 72177750 -77339287 + C-rich Low_complexity Low_complexity 1 175 0 4 1135 942 242 9 9 chr6 72178507 72178724 -77338313 + ID_B1 SINE B4 5 221 -3 4 1135 274 342 81 0 chr6 72178878 72178989 -77338048 + MIRc SINE MIR 75 194 -74 4 1135 1047 281 7 32 chr6 72179548 72179827 -77337210 - B4A SINE B4 -20 272 1 4 1135 684 252 46 0 chr6 72181634 72181785 -77335252 + RSINE1 SINE B4 4 161 -4 4 1135 699 228 0 69 chr6 72181812 72181972 -77335065 + B1_Mur1 SINE Alu 1 149 0 4 1135 243 0 0 0 chr6 72182400 72182427 -77334610 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1135 199 287 38 15 chr6 72182677 72182786 -77334251 + MIRm SINE MIR 74 199 -69 4 1135 276 233 0 0 chr6 72183279 72183339 -77333698 - MIR SINE MIR -139 123 64 4 1135 228 78 19 56 chr6 72183887 72183941 -77333096 + C-rich Low_complexity Low_complexity 2 53 0 4 1135 229 420 40 7 chr6 72186312 72186463 -77330574 + MIR SINE MIR 37 192 -70 4 1135 239 79 26 0 chr6 72188746 72188784 -77328253 + (GGGTG)n Simple_repeat Simple_repeat 5 43 0 4 1135 213 277 0 0 chr6 72188850 72188897 -77328140 + ID4_ SINE ID 13 59 -24 4 1135 180 0 114 0 chr6 72189413 72189448 -77327589 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1135 579 233 86 81 chr6 72190245 72190455 -77326582 + B3 SINE B2 2 212 -4 4 1135 858 200 111 39 chr6 72190498 72190706 -77326331 + ID_B1 SINE B4 2 224 0 4 1135 398 274 91 40 chr6 72190706 72190881 -77326156 + B2_Mm2 SINE B2 2 185 -10 4 1135 751 217 89 20 chr6 72190883 72191085 -77325952 + B3 SINE B2 1 216 0 4 1135 22 56 0 0 chr6 72191087 72191123 -77325914 + AT_rich Low_complexity Low_complexity 1 36 0 4 1135 500 273 26 13 chr6 72192052 72192204 -77324833 + MER117 DNA MER1_type 8 161 -36 4 1135 241 222 0 0 chr6 72192242 72192287 -77324750 - MIR3 SINE MIR -51 157 113 4 1135 203 371 135 18 chr6 72193360 72193530 -77323507 + MIRb SINE MIR 1 190 -78 4 1135 812 243 104 0 chr6 72193535 72193737 -77323300 + ID_B1 SINE B4 2 224 0 4 1135 1209 48 7 0 chr6 72193741 72193887 -77323150 + B1_Mus1 SINE Alu 1 147 -1 4 1135 233 237 0 0 chr6 72194027 72194086 -77322951 + L2b LINE L2 3131 3189 -186 4 1135 917 251 27 54 chr6 72196368 72196663 -77320374 - B4A SINE B4 0 292 6 4 1135 372 309 146 17 chr6 72196705 72196951 -77320086 - L1MC5 LINE L1 -1041 7001 6679 4 1135 815 208 109 5 chr6 72197244 72197437 -77319600 - B3 SINE B2 -2 214 2 4 1135 285 98 0 0 chr6 72197444 72197485 -77319552 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1135 665 229 14 0 chr6 72197491 72197631 -77319406 - RSINE1 SINE B4 -21 144 3 4 1135 215 305 68 0 chr6 72197828 72197887 -77319150 + PB1D10 SINE Alu 7 69 -48 4 1135 267 31 0 0 chr6 72197938 72197970 -77319067 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1135 223 314 63 99 chr6 72199165 72199356 -77317681 - B2_Mm2 SINE B2 -2 193 10 4 1135 594 256 23 0 chr6 72199229 72199358 -77317679 - RSINE1 SINE B4 -25 140 9 4 1135 637 287 50 0 chr6 72199451 72199653 -77317384 - MLT1F LTR MaLR -16 532 321 4 1135 984 82 0 0 chr6 72199743 72199878 -77317159 + (GAA)n Simple_repeat Simple_repeat 2 136 0 4 1135 1133 95 0 0 chr6 72199917 72200064 -77316973 + B1_Mm SINE Alu 1 147 0 4 1135 234 91 0 0 chr6 72200064 72200097 -77316940 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1135 369 292 62 0 chr6 72200252 72200348 -77316689 + PB1D10 SINE Alu 8 109 -8 4 1135 379 234 0 58 chr6 72200358 72200444 -77316593 + ID4_ SINE ID 1 81 -2 4 1135 853 277 39 0 chr6 72200534 72200740 -77316297 - B3 SINE B2 0 216 3 4 1135 309 360 81 34 chr6 72200820 72201056 -77315981 + MLT1L LTR MaLR 22 268 -342 4 1135 699 289 99 0 chr6 72201192 72201393 -77315644 + B4A SINE B4 11 231 -61 4 1135 987 162 110 0 chr6 72201396 72201587 -77315450 + B3 SINE B2 5 216 0 4 1135 502 296 13 84 chr6 72201731 72201886 -77315151 + RSINE1 SINE B4 3 146 -19 4 1135 221 273 70 80 chr6 72202432 72202487 -77314550 - B2_Mm2 SINE B2 0 195 144 4 1135 420 37 0 0 chr6 72202487 72202541 -77314496 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1135 221 273 70 80 chr6 72202541 72202672 -77314365 - B2_Mm2 SINE B2 -52 143 11 4 1135 321 339 115 0 chr6 72202545 72202675 -77314362 - RSINE1 SINE B4 -12 153 9 4 1135 701 276 135 5 chr6 72202669 72202884 -77314153 - B4A SINE B4 -46 246 4 4 1135 306 306 0 113 chr6 72203329 72203356 -77313681 + ID SINE ID 65 74 -150 4 1135 522 244 0 80 chr6 72203356 72203494 -77313543 + B1_Mur3 SINE Alu 3 129 -20 4 1135 1330 70 41 0 chr6 72203501 72203673 -77313364 + B2_Mm2 SINE B2 2 180 -15 4 1135 257 320 0 19 chr6 72203717 72203822 -77313215 + CT-rich Low_complexity Low_complexity 3 105 0 4 1135 184 245 19 19 chr6 72205301 72205355 -77311682 + L2c LINE L2 3081 3134 -253 4 1135 617 229 163 11 chr6 72205687 72205877 -77311160 + ID_B1 SINE B4 3 221 -3 4 1135 180 0 0 0 chr6 72206156 72206176 -77310861 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1135 577 233 77 33 chr6 72206389 72206571 -77310466 + B2_Mm2 SINE B2 5 194 -1 4 1135 613 247 6 69 chr6 72206661 72206835 -77310202 + RSINE1 SINE B4 3 165 0 4 1135 351 245 58 10 chr6 72206886 72206989 -77310048 - RMER15 LTR ERVL -95 480 373 4 1135 830 213 47 21 chr6 72207455 72207647 -77309390 + B3A SINE B2 2 198 0 4 1135 1622 53 0 0 chr6 72207750 72207940 -77309097 - B2_Mm1t SINE B2 -3 190 1 4 1135 408 111 0 0 chr6 72208013 72208076 -77308961 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1135 528 291 8 0 chr6 72208096 72208230 -77308807 - B3A SINE B2 -63 135 1 4 1135 234 0 0 0 chr6 72208543 72208569 -77308468 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 1135 1130 63 14 0 chr6 72208646 72208789 -77308248 - B1_Mm SINE Alu 0 147 3 4 1135 28 0 0 0 chr6 72208800 72208828 -77308209 + AT_rich Low_complexity Low_complexity 1 28 0 4 1135 392 194 44 44 chr6 72208872 72208985 -77308052 - B3 SINE B2 -103 113 1 4 1135 737 203 0 35 chr6 72209004 72209147 -77307890 + B1_Mur1 SINE Alu 1 138 -11 4 1135 471 301 19 81 chr6 72209199 72209409 -77307628 + B3A SINE B2 2 198 0 4 1135 387 0 0 0 chr6 72210218 72210261 -77306776 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1135 690 304 70 12 chr6 72210267 72210510 -77306527 - B4A SINE B4 -12 280 24 4 1135 759 202 97 65 chr6 72210541 72210758 -77306279 - ID_B1 SINE B4 0 224 1 4 1135 234 0 0 0 chr6 72211519 72211545 -77305492 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1135 345 309 72 2 chr6 72211562 72211718 -77305319 + MIRb SINE MIR 86 266 -2 4 1135 952 216 20 15 chr6 72211724 72211921 -77305116 - ID_B1 SINE B4 -26 198 1 4 1135 268 296 25 0 chr6 72212015 72212096 -77304941 - ID4_ SINE ID 0 83 1 4 1135 582 234 0 15 chr6 72212247 72212377 -77304660 + RSINE1 SINE B4 9 136 -29 4 1135 317 293 101 0 chr6 72213037 72213136 -77303901 - L1ME4a LINE L1 0 6124 6016 4 1135 282 216 0 0 chr6 72213322 72213396 -77303641 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1135 1000 218 14 14 chr6 72213396 72213605 -77303432 - B4A SINE B4 0 292 84 4 1135 25 83 0 0 chr6 72213613 72213673 -77303364 + AT_rich Low_complexity Low_complexity 1 60 0 4 1135 305 310 40 0 chr6 72213673 72213764 -77303273 - B4 SINE B4 -196 96 2 4 1135 234 208 200 40 chr6 72213781 72213881 -77303156 - PB1D10 SINE Alu -1 116 1 4 1135 282 223 60 53 chr6 72213811 72213896 -77303141 - ID_B1 SINE B4 -72 152 71 4 1135 432 333 71 22 chr6 72214131 72214269 -77302768 - MT2A LTR ERVL -228 305 166 4 1135 1224 40 0 0 chr6 72214269 72214419 -77302618 + (TTCTCC)n Simple_repeat Simple_repeat 5 154 0 4 1135 432 333 71 22 chr6 72214419 72214504 -77302533 - MT2A LTR ERVL -368 165 72 4 1135 378 261 100 8 chr6 72214443 72214563 -77302474 - MTE2a LTR MaLR -248 131 1 4 1135 419 261 36 0 chr6 72214728 72214843 -77302194 + PB1D7 SINE Alu 2 120 0 4 1135 600 291 48 112 chr6 72214847 72215141 -77301896 + B4A SINE B4 2 276 -16 4 1135 312 27 0 0 chr6 72215254 72215291 -77301746 + (GGA)n Simple_repeat Simple_repeat 3 39 0 4 1135 793 306 114 29 chr6 72215354 72215878 -77301159 + HAL1 LINE L1 1261 1829 -678 4 1135 259 290 16 0 chr6 72216002 72216064 -77300973 - B1_Mur1 SINE Alu -19 130 68 4 1135 662 260 99 9 chr6 72216644 72216865 -77300172 + B4 SINE B4 45 285 -7 4 1135 377 311 6 36 chr6 72217118 72217285 -77299752 + GA-rich Low_complexity Low_complexity 5 166 0 4 1135 249 57 0 0 chr6 72217576 72217611 -77299426 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1135 243 242 15 46 chr6 72218156 72218221 -77298816 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 4 1135 238 268 23 47 chr6 72218221 72218242 -77298795 + ID2 SINE ID 8 92 -60 4 1135 857 242 68 27 chr6 72218625 72218888 -77298149 + B4A SINE B4 2 275 -17 4 1135 198 71 0 0 chr6 72218924 72218952 -77298085 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1135 333 191 0 0 chr6 72218952 72219057 -77297980 + GA-rich Low_complexity Low_complexity 1 105 0 4 1135 924 269 23 0 chr6 72219067 72219283 -77297754 + ID_B1 SINE B4 4 224 0 5 1135 505 301 29 0 chr6 72219473 72219609 -77297428 + ID_B1 SINE B4 84 223 -1 5 1135 1129 69 7 0 chr6 72219865 72220009 -77297028 + B1_Mus2 SINE Alu 1 145 -2 5 1135 386 163 52 20 chr6 72220090 72220201 -77296836 + B1_Mus2 SINE Alu 3 138 -9 5 1135 214 229 0 0 chr6 72220207 72220229 -77296808 + polypurine Low_complexity Low_complexity 1 22 0 5 1135 338 0 0 23 chr6 72220229 72220272 -77296765 + (GGGGA)n Simple_repeat Simple_repeat 4 45 0 5 1135 214 229 0 0 chr6 72220272 72220297 -77296740 + polypurine Low_complexity Low_complexity 23 47 0 5 1136 418 340 81 8 chr6 72221031 72221265 -77295772 - MLT2B1 LTR ERVL -10 510 260 5 1136 288 270 40 0 chr6 72221268 72221342 -77295695 + L2 LINE L2 2312 2388 -1031 5 1136 229 266 30 30 chr6 72221702 72221768 -77295269 + MLT1I LTR MaLR 342 407 -4 5 1136 572 268 195 13 chr6 72221943 72222174 -77294863 + B4 SINE B4 1 273 -19 5 1136 236 349 18 27 chr6 72222897 72223009 -77294028 - MIRc SINE MIR -78 190 80 5 1136 481 248 183 32 chr6 72223583 72223829 -77293208 + B4A SINE B4 1 283 -9 5 1136 348 284 163 23 chr6 72223901 72224090 -77292947 + B4 SINE B4 7 214 -10 5 1136 256 297 30 174 chr6 72223966 72224133 -77292904 + B1F2 SINE Alu 5 147 -2 5 1136 646 262 28 37 chr6 72224830 72225033 -77292004 + B3A SINE B2 9 213 -3 5 1136 386 423 39 4 chr6 72225323 72225541 -77291496 + B4A SINE B4 3 230 -62 5 1136 1974 178 104 0 chr6 72225541 72225917 -77291120 - MTD LTR MaLR 0 419 5 5 1136 386 423 39 4 chr6 72225917 72225978 -77291059 + B4A SINE B4 231 291 -1 5 1136 198 0 0 0 chr6 72225978 72226000 -77291037 + (CATA)n Simple_repeat Simple_repeat 3 24 0 5 1136 474 180 180 0 chr6 72226140 72226240 -77290797 - ID_B1 SINE B4 -2 222 105 5 1136 365 265 205 0 chr6 72226240 72226257 -77290780 - B1F1 SINE Alu -2 147 7 5 1136 982 223 35 0 chr6 72226257 72226454 -77290583 - B3 SINE B2 -10 206 3 5 1136 522 0 0 0 chr6 72228083 72228141 -77288896 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1136 704 226 49 4 chr6 72228325 72228478 -77288559 + ID_B1 SINE B4 84 244 -48 5 1136 351 281 0 12 chr6 72228680 72228763 -77288274 + ID4_ SINE ID 2 83 0 5 1136 346 105 0 50 chr6 72228770 72228850 -77288187 + (CAGA)n Simple_repeat Simple_repeat 2 77 0 5 1136 189 0 0 0 chr6 72229200 72229221 -77287816 + (CTG)n Simple_repeat Simple_repeat 2 22 0 5 1136 246 62 0 0 chr6 72229219 72229251 -77287786 + (TTC)n Simple_repeat Simple_repeat 3 34 0 5 1136 213 121 0 0 chr6 72229530 72229563 -77287474 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1136 598 245 95 0 chr6 72229626 72229773 -77287264 - ID_B1 SINE B4 -63 161 1 5 1136 890 184 133 6 chr6 72229870 72230050 -77286987 + B3 SINE B2 14 216 0 5 1136 1001 306 77 69 chr6 72230228 72231074 -77285963 - L1MC4a LINE L1 -83 7799 6947 5 1136 240 292 0 0 chr6 72231153 72231201 -77285836 + RSINE1 SINE B4 2 49 -116 5 1136 207 0 0 0 chr6 72231270 72231293 -77285744 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1136 32 0 0 0 chr6 72231293 72231325 -77285712 + AT_rich Low_complexity Low_complexity 1 32 0 5 1136 699 167 321 18 chr6 72231334 72231499 -77285538 - B3 SINE B2 0 216 2 5 1136 1109 241 19 0 chr6 72231529 72231741 -77285296 + ID_B1 SINE B4 8 223 -1 5 1136 270 360 11 0 chr6 72231808 72231897 -77285140 - MER2B DNA MER2_type -1 335 246 5 1136 427 260 40 0 chr6 72231909 72232009 -77285028 + ID_B1 SINE B4 8 111 -113 5 1136 603 74 0 0 chr6 72232029 72232110 -77284927 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 5 1136 384 77 0 0 chr6 72232112 72232164 -77284873 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1136 237 298 61 83 chr6 72232662 72232794 -77284243 - MER2B DNA MER2_type -171 165 37 5 1136 1200 75 0 0 chr6 72232976 72233122 -77283915 - B1_Mus2 SINE Alu 0 147 2 5 1136 418 285 28 49 chr6 72233172 72233316 -77283721 - B1_Mur1 SINE Alu 0 149 9 5 1136 354 320 35 86 chr6 72233337 72233535 -77283502 - B2_Mm1a SINE B2 -5 188 1 5 1136 603 216 112 0 chr6 72233538 72233663 -77283374 - ID_B1 SINE B4 -2 222 84 5 1136 21 0 0 0 chr6 72233768 72233789 -77283248 + AT_rich Low_complexity Low_complexity 1 21 0 5 1136 1217 94 5 95 chr6 72233789 72234000 -77283037 + B2_Mm2 SINE B2 2 193 -2 5 1136 818 192 13 13 chr6 72234142 72234295 -77282742 - ID_B1 SINE B4 -17 207 55 5 1136 804 229 42 88 chr6 72234517 72234756 -77282281 + B4A SINE B4 2 229 -63 5 1136 683 191 43 35 chr6 72234760 72234901 -77282136 + B1_Mur4 SINE Alu 1 142 -8 5 1136 483 151 0 0 chr6 72235026 72235119 -77281918 + (TGAA)n Simple_repeat Simple_repeat 1 93 0 5 1136 991 134 58 6 chr6 72235219 72235392 -77281645 + ORR1B1 LTR MaLR 213 394 0 5 1136 262 326 149 15 chr6 72235392 72235512 -77281525 + ID_B1 SINE B4 86 223 -1 5 1136 305 246 29 151 chr6 72235639 72235778 -77281259 + B1_Mur1 SINE Alu 28 149 0 5 1136 249 257 35 7 chr6 72236030 72236171 -77280866 + (TA)n Simple_repeat Simple_repeat 1 145 0 5 1136 536 214 6 0 chr6 72236217 72236395 -77280642 + CT-rich Low_complexity Low_complexity 1 179 0 5 1136 212 211 0 21 chr6 72236414 72236511 -77280526 + (TCTCTG)n Simple_repeat Simple_repeat 6 100 0 5 1136 280 333 0 0 chr6 72236911 72236983 -77280054 + B1_Mur1 SINE Alu 57 128 -21 5 1136 436 232 5 61 chr6 72237411 72237548 -77279489 + B1F SINE Alu 18 131 -18 5 1136 311 190 0 49 chr6 72237551 72237612 -77279425 + B1F SINE Alu 61 118 -31 5 1136 295 226 0 88 chr6 72237652 72237720 -77279317 + B1F1 SINE Alu 66 127 -22 5 1136 378 190 0 37 chr6 72237716 72237798 -77279239 + B1F1 SINE Alu 66 144 -5 5 1136 37 0 0 0 chr6 72237798 72237835 -77279202 + AT_rich Low_complexity Low_complexity 1 37 0 5 1136 1260 48 0 0 chr6 72237846 72237993 -77279044 + B1_Mm SINE Alu 1 147 0 5 1136 198 0 0 0 chr6 72237993 72238015 -77279022 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1136 375 284 124 54 chr6 72238060 72238302 -77278735 + Charlie13a DNA Charlie 157 415 -1099 5 1136 393 195 0 25 chr6 72238402 72238481 -77278556 + PB1D10 SINE Alu 3 79 -38 5 1136 348 311 58 0 chr6 72238480 72238583 -77278454 + ID_B1 SINE B4 97 205 -19 5 1136 1161 68 0 13 chr6 72238612 72238761 -77278276 + B1_Mus1 SINE Alu 2 148 0 5 1136 620 26 13 0 chr6 72238807 72238885 -77278152 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 5 1136 218 205 0 0 chr6 72238892 72238931 -77278106 + B3A SINE B2 2 40 -158 5 1136 577 240 24 121 chr6 72239440 72239606 -77277431 + MTEb LTR MaLR 4 153 -226 5 1136 522 309 19 32 chr6 72239613 72239770 -77277267 + RSINE1 SINE B4 3 157 -8 5 1136 248 131 0 21 chr6 72239813 72239860 -77277177 + CT-rich Low_complexity Low_complexity 4 49 0 5 1136 369 167 133 44 chr6 72239866 72239979 -77277058 - B3A SINE B2 -49 146 24 5 1136 1002 113 0 0 chr6 72239980 72240131 -77276906 + (TTC)n Simple_repeat Simple_repeat 2 152 0 5 1136 25 65 0 0 chr6 72240138 72240184 -77276853 + AT_rich Low_complexity Low_complexity 1 46 0 5 1136 4226 76 23 20 chr6 72240205 72240852 -77276185 - Lx3_Mus LINE L1 -417 6592 5944 5 1136 6321 74 1 2 chr6 72240848 72241756 -77275281 + Lx3_Mus LINE L1 5038 5941 -1068 5 1136 713 221 15 0 chr6 72241817 72241948 -77275089 + B1_Mur1 SINE Alu 2 134 -15 5 1136 641 76 11 0 chr6 72241964 72242056 -77274981 + (GGA)n Simple_repeat Simple_repeat 2 94 0 5 1136 587 233 45 189 chr6 72242056 72242278 -77274759 + MTEb LTR MaLR 182 371 -8 5 1136 22 0 0 0 chr6 72243728 72243750 -77273287 + AT_rich Low_complexity Low_complexity 1 22 0 5 1136 417 269 46 0 chr6 72243757 72243865 -77273172 - B1_Mur1 SINE Alu -36 113 1 5 1136 489 248 62 0 chr6 72244189 72244302 -77272735 - RSINE1 SINE B4 -36 129 10 5 1136 305 343 36 0 chr6 72244405 72244545 -77272492 + L1MB2 LINE L1 733 877 -6457 5 1136 458 33 0 16 chr6 72244684 72244745 -77272292 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 5 1136 477 50 0 0 chr6 72244833 72244893 -77272144 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 1136 852 227 15 44 chr6 72244964 72245167 -77271870 - B3A SINE B2 -1 197 1 5 1136 252 303 0 13 chr6 72245293 72245312 -77271725 - BC1_Mm scRNA scRNA -62 90 15 5 1136 309 207 0 0 chr6 72245312 72245370 -77271667 - ID SINE ID -152 72 15 5 1136 180 0 0 0 chr6 72245381 72245401 -77271636 + (TC)n Simple_repeat Simple_repeat 2 21 0 5 1136 265 338 0 0 chr6 72245401 72245469 -77271568 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 1136 387 243 38 19 chr6 72245553 72245658 -77271379 - B1F SINE Alu 0 149 43 5 1136 23 0 0 0 chr6 72245659 72245682 -77271355 + AT_rich Low_complexity Low_complexity 1 23 0 5 1136 386 225 31 92 chr6 72245682 72245780 -77271257 - U6 snRNA snRNA -15 92 1 5 1136 406 270 20 0 chr6 72245890 72245990 -77271047 - RMER5 LTR ERV1 -31 503 402 5 1136 246 81 0 0 chr6 72246846 72246883 -77270154 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1136 231 61 0 0 chr6 72246884 72246917 -77270120 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 5 1136 391 310 0 110 chr6 72246922 72247049 -77269988 - B1F1 SINE Alu -32 117 5 5 1136 919 245 71 0 chr6 72246948 72247132 -77269905 - ID_B1 SINE B4 -26 198 2 5 1136 841 203 0 20 chr6 72247198 72247349 -77269688 + B1_Mur3 SINE Alu 2 149 0 5 1136 237 65 0 0 chr6 72247363 72247394 -77269643 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1136 353 234 16 0 chr6 72247458 72247522 -77269515 + B4 SINE B4 110 174 -118 6 1136 287 253 127 0 chr6 72247459 72247538 -77269499 + PB1D9 SINE Alu 26 114 -6 6 1136 462 314 35 96 chr6 72247617 72247681 -77269356 + L1MB2 LINE L1 4809 4870 -2136 5 1136 1699 26 0 0 chr6 72247681 72247874 -77269163 + B2_Mm1a SINE B2 1 193 0 6 1136 462 314 35 96 chr6 72247874 72248070 -77268967 + L1MB2 LINE L1 4871 5053 -1953 5 1136 259 265 0 0 chr6 72248311 72248360 -77268677 + (CACG)n Simple_repeat Simple_repeat 2 50 0 6 1136 912 126 74 0 chr6 72248380 72248515 -77268522 + B1_Mus2 SINE Alu 2 146 -1 6 1136 395 242 10 21 chr6 72248623 72248718 -77268319 + B4A SINE B4 2 95 -197 6 1136 366 197 42 0 chr6 72248718 72248769 -77268268 + B3A SINE B2 1 54 -144 6 1136 375 313 0 94 chr6 72248769 72248848 -77268189 + PB1D10 SINE Alu 3 77 -40 6 1136 825 225 70 16 chr6 72248848 72249033 -77268004 + B3 SINE B2 3 197 -19 6 1136 375 313 0 94 chr6 72249033 72249080 -77267957 + PB1D10 SINE Alu 78 117 0 6 1136 265 353 0 0 chr6 72249572 72249640 -77267397 + B4A SINE B4 83 150 -142 6 1136 370 299 99 9 chr6 72249586 72249704 -77267333 + B1F2 SINE Alu 12 127 -22 6 1136 226 315 61 15 chr6 72249704 72249836 -77267201 + L1MB2 LINE L1 5910 6047 -953 5 1136 252 209 118 15 chr6 72249921 72249989 -77267048 + ID4 SINE ID 6 80 -3 6 1136 650 294 126 55 chr6 72249991 72250142 -77266895 + L1MB2 LINE L1 6183 6346 -685 5 1136 477 34 0 0 chr6 72250142 72250201 -77266836 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1136 650 294 126 55 chr6 72250201 72250644 -77266393 + L1MB2 LINE L1 6347 6819 -212 5 1136 795 258 42 19 chr6 72250645 72250858 -77266179 + ID_B1 SINE B4 2 219 -5 6 1136 468 0 0 0 chr6 72250871 72250923 -77266114 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1136 489 261 90 21 chr6 72250989 72251177 -77265860 + L1MB2 LINE L1 6804 7004 -27 5 1136 357 351 39 45 chr6 72251225 72251380 -77265657 - Charlie1a DNA MER1_type -970 485 332 6 1136 661 284 56 35 chr6 72251387 72251672 -77265365 + B4A SINE B4 1 291 -1 6 1136 931 262 0 0 chr6 72251757 72251940 -77265097 + B3A SINE B2 1 183 -15 6 1136 222 280 26 39 chr6 72252024 72252102 -77264935 - B3A SINE B2 -105 93 17 6 1136 21 0 0 0 chr6 72252136 72252157 -77264880 + AT_rich Low_complexity Low_complexity 1 21 0 6 1136 666 347 111 55 chr6 72252186 72252692 -77264345 - RMER5 LTR ERV1 0 534 1 6 1136 217 239 0 21 chr6 72253192 72253239 -77263798 + B4 SINE B4 76 121 -171 6 1136 748 222 0 14 chr6 72253245 72253391 -77263646 + ID_B1 SINE B4 81 224 0 6 1136 227 122 102 0 chr6 72253350 72253399 -77263638 + FAM SINE Alu 262 315 0 6 1136 900 180 0 20 chr6 72253423 72253576 -77263461 + B1_Mur4 SINE Alu 1 150 0 6 1136 248 326 49 77 chr6 72254733 72254876 -77262161 - MIRm SINE MIR -94 182 44 6 1136 328 267 40 46 chr6 72255278 72255518 -77261519 + (GGATG)n Simple_repeat Simple_repeat 1 238 0 6 1136 183 129 0 0 chr6 72256001 72256032 -77261005 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1136 1494 35 0 0 chr6 72256044 72256441 -77260596 + (CA)n Simple_repeat Simple_repeat 1 397 0 6 1136 276 149 14 29 chr6 72257862 72257931 -77259106 + Lx4B LINE L1 6987 7054 -4 6 1136 947 236 44 145 chr6 72257952 72258033 -77259004 + B4A SINE B4 2 85 -207 6 1136 1177 57 107 6 chr6 72258033 72258192 -77258845 + B2_Mm2 SINE B2 2 176 -19 6 1136 947 236 44 145 chr6 72258192 72258343 -77258694 + B4A SINE B4 86 224 -68 6 1136 743 231 10 62 chr6 72258343 72258551 -77258486 + B3A SINE B2 2 198 0 6 1136 947 236 44 145 chr6 72258551 72258634 -77258403 + B4A SINE B4 225 286 -6 6 1136 350 340 17 38 chr6 72260026 72260159 -77256878 - PB1D10 SINE Alu -5 145 1 6 1136 1018 208 5 16 chr6 72260257 72260448 -77256589 - B3 SINE B2 -27 189 1 6 1136 522 243 0 36 chr6 72260486 72260597 -77256440 - PB1D10 SINE Alu -10 107 1 6 1136 395 275 43 71 chr6 72261264 72261282 -77255755 + B1_Mur4 SINE Alu 1 137 -13 6 1136 580 246 0 41 chr6 72261282 72261405 -77255632 + ID_B1 SINE B4 94 211 -13 6 1136 1007 130 14 0 chr6 72261567 72261713 -77255324 + B1_Mus1 SINE Alu 1 148 0 6 1136 441 323 14 43 chr6 72261818 72261957 -77255080 - ID_B1 SINE B4 -89 135 1 6 1136 588 194 181 39 chr6 72262021 72262203 -77254834 - B3 SINE B2 -7 209 2 6 1136 192 255 19 38 chr6 72263737 72263790 -77253247 + MIR SINE MIR 48 99 -109 6 1136 612 0 0 0 chr6 72264044 72264112 -77252925 + (CCA)n Simple_repeat Simple_repeat 3 70 0 6 1136 354 262 15 90 chr6 72264377 72264511 -77252526 + ID_B1 SINE B4 2 125 -99 6 1136 217 256 79 34 chr6 72264473 72264562 -77252475 + PB1D9 SINE Alu 7 99 -21 6 1136 293 189 37 29 chr6 72264570 72264706 -77252331 + GA-rich Low_complexity Low_complexity 3 139 0 6 1136 650 216 56 0 chr6 72264791 72264916 -77252121 + RSINE1 SINE B4 3 134 -31 6 1136 465 50 0 0 chr6 72264919 72264979 -77252058 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1136 512 252 80 15 chr6 72265003 72265140 -77251897 + RSINE1 SINE B4 4 149 -16 6 1136 366 212 12 48 chr6 72265291 72265375 -77251662 + ID4_ SINE ID 2 82 -1 6 1136 393 218 26 0 chr6 72265767 72265845 -77251192 + B3A SINE B2 1 80 -118 6 1136 1159 42 21 14 chr6 72265859 72266004 -77251033 - B1_Mus1 SINE Alu -1 147 2 6 1136 260 233 11 85 chr6 72266436 72266530 -77250507 + RLTR25B LTR ERVK 429 515 -513 6 1136 536 191 0 71 chr6 72266450 72266563 -77250474 + B1_Mur4 SINE Alu 43 147 -3 6 1136 874 200 50 91 chr6 72266668 72266888 -77250149 - B3 SINE B2 -3 213 3 6 1136 25 0 0 0 chr6 72266903 72266928 -77250109 + AT_rich Low_complexity Low_complexity 1 25 0 6 1136 1660 31 5 0 chr6 72266946 72267138 -77249899 + B2_Mm1t SINE B2 1 193 0 6 1136 275 182 104 15 chr6 72267259 72267326 -77249711 + ID4 SINE ID 2 74 -9 6 1136 334 317 0 12 chr6 72267377 72267460 -77249577 - ID_B1 SINE B4 -73 151 70 6 1136 527 272 224 45 chr6 72267522 72267768 -77249269 - B4 SINE B4 -2 290 1 6 1136 325 281 21 0 chr6 72267771 72267867 -77249170 - BC1_Mm scRNA scRNA -54 98 1 6 1136 531 277 43 21 chr6 72267969 72268109 -77248928 - RSINE1 SINE B4 -19 146 4 6 1136 343 186 89 40 chr6 72268128 72268229 -77248808 + PB1D10 SINE Alu 5 110 -7 6 1136 282 164 0 0 chr6 72268232 72268287 -77248750 + A-rich Low_complexity Low_complexity 1 55 0 6 1136 592 207 8 32 chr6 72269420 72269545 -77247492 - B3 SINE B2 0 216 95 6 1136 608 291 39 43 chr6 72270073 72270281 -77246756 - ID_B1 SINE B4 -17 207 1 6 1136 391 293 26 0 chr6 72270606 72270722 -77246315 + PB1D7 SINE Alu 1 119 -1 6 1136 209 238 0 0 chr6 72270859 72270901 -77246136 + MER5B DNA MER1_type 6 47 -131 6 1136 196 370 49 0 chr6 72271607 72271688 -77245349 + MIRb SINE MIR 26 110 -158 6 1136 185 311 0 0 chr6 72271911 72271956 -77245081 - L2 LINE L2 -1891 1528 1484 6 1136 290 241 74 25 chr6 72272188 72272269 -77244768 + B3 SINE B2 125 209 -7 6 1136 335 236 80 0 chr6 72272340 72272426 -77244611 + B1_Mur2 SINE Alu 60 143 -6 6 1136 22 0 0 0 chr6 72272428 72272450 -77244587 + AT_rich Low_complexity Low_complexity 1 22 0 6 1136 615 311 7 7 chr6 72272458 72272607 -77244430 + RSINE1 SINE B4 11 159 -6 6 1136 1252 98 33 0 chr6 72272673 72272856 -77244181 + B2_Mm1t SINE B2 1 189 -4 6 1136 1133 192 44 0 chr6 72273259 72273462 -77243575 + B3 SINE B2 1 212 -4 6 1136 1321 103 16 0 chr6 72273468 72273652 -77243385 + B2_Mm2 SINE B2 2 188 -7 6 1136 353 274 20 50 chr6 72273722 72273822 -77243215 + PB1D10 SINE Alu 13 109 -8 6 1136 944 236 18 23 chr6 72274449 72274666 -77242371 + B3 SINE B2 1 216 0 6 1136 1214 68 0 0 chr6 72274669 72274816 -77242221 + B1_Mus2 SINE Alu 1 147 0 6 1136 1292 71 18 0 chr6 72274994 72275162 -77241875 + B2_Mm2 SINE B2 2 172 -23 6 1136 421 279 24 16 chr6 72275196 72275320 -77241717 + ID_B1 SINE B4 99 223 -1 6 1136 281 221 65 112 chr6 72275489 72275596 -77241441 + PB1 SINE Alu 24 125 -2 6 1136 420 245 92 0 chr6 72275500 72275598 -77241439 + ID_B1 SINE B4 117 223 -1 6 1136 744 224 142 0 chr6 72276470 72276653 -77240384 - B3 SINE B2 -4 212 4 6 1136 216 97 0 0 chr6 72276664 72276695 -77240342 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1136 695 80 312 0 chr6 72276695 72276807 -77240230 - B1_Mus1 SINE Alu 0 148 2 6 1136 1523 73 5 0 chr6 72276818 72277010 -77240027 - B2_Mm1a SINE B2 0 193 1 6 1136 275 270 54 0 chr6 72277043 72277117 -77239920 + ID4 SINE ID 5 82 -1 6 1136 224 59 29 0 chr6 72277318 72277352 -77239685 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1136 696 296 12 6 chr6 72277364 72277524 -77239513 - RSINE1 SINE B4 0 165 5 6 1136 432 281 73 7 chr6 72277997 72278133 -77238904 + ID_B1 SINE B4 79 223 -1 6 1136 228 211 0 0 chr6 72279793 72279864 -77237173 + GA-rich Low_complexity Low_complexity 2 72 0 6 1136 866 236 9 90 chr6 72279866 72280051 -77236986 + B3 SINE B2 2 170 -46 6 1136 1204 48 0 26 chr6 72280051 72280202 -77236835 + B1_Mm SINE Alu 1 147 0 6 1136 866 236 9 90 chr6 72280202 72280239 -77236798 + B3 SINE B2 171 206 -10 6 1136 495 243 36 9 chr6 72280297 72280409 -77236628 + PB1D10 SINE Alu 1 115 -2 6 1136 284 300 19 39 chr6 72280437 72280541 -77236496 + B4A SINE B4 24 125 -167 6 1136 477 0 0 0 chr6 72280552 72280605 -77236432 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1136 335 213 136 5 chr6 72280878 72280979 -77236058 + PB1 SINE Alu 5 124 -3 6 1136 343 250 8 111 chr6 72281309 72281435 -77235602 + MT2B LTR ERVL 150 262 -339 6 1136 692 148 102 0 chr6 72281335 72281463 -77235574 + B1_Mur3 SINE Alu 9 149 0 7 1136 666 92 50 3 chr6 72281467 72281577 -77235460 + B2_Mm2 SINE B2 1 117 -81 7 1136 1023 102 0 0 chr6 72281709 72281846 -77235191 + B1_Mus1 SINE Alu 12 148 0 7 1136 436 254 201 20 chr6 72281905 72282254 -77234783 - L1MA5 LINE L1 -33 6267 5856 7 1136 498 254 35 17 chr6 72282279 72282395 -77234642 + PB1D7 SINE Alu 2 119 -1 7 1136 342 0 0 0 chr6 72282397 72282435 -77234602 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 7 1136 452 197 0 0 chr6 72282498 72282569 -77234468 + ID_B1 SINE B4 88 158 -66 7 1136 395 288 40 114 chr6 72282569 72282647 -77234390 + B1F2 SINE Alu 7 144 -5 7 1136 768 129 96 29 chr6 72282714 72282850 -77234187 + B1_Mur4 SINE Alu 1 145 -5 7 1136 1171 63 0 0 chr6 72282885 72283027 -77234010 + B1_Mus1 SINE Alu 2 143 -5 7 1136 180 0 0 0 chr6 72283038 72283058 -77233979 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1136 638 227 24 44 chr6 72284107 72284277 -77232760 + B3A SINE B2 30 198 0 7 1136 595 235 29 36 chr6 72284606 72284743 -77232294 + B1_Mur2 SINE Alu 1 136 -13 7 1136 225 0 0 0 chr6 72284803 72284828 -77232209 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 7 1136 1110 188 24 19 chr6 72284852 72285058 -77231979 + B3 SINE B2 3 209 -7 7 1136 343 286 109 45 chr6 72285130 72285161 -77231876 - PB1D10 SINE Alu 0 117 1 7 1136 355 253 127 0 chr6 72285161 72285240 -77231797 - ID_B1 SINE B4 -54 170 82 7 1136 386 331 6 60 chr6 72285662 72285714 -77231323 + ID_B1 SINE B4 65 222 -2 7 1136 652 174 43 0 chr6 72285714 72285829 -77231208 + B1_Mur2 SINE Alu 30 149 0 7 1136 494 184 0 126 chr6 72286560 72286703 -77230334 + MT2B LTR ERVL 140 264 -337 7 1136 1141 56 0 7 chr6 72286595 72286739 -77230298 + B1_Mus1 SINE Alu 6 148 0 7 1136 494 226 10 0 chr6 72286874 72286981 -77230056 + B1F SINE Alu 11 118 -31 7 1136 228 240 0 13 chr6 72286982 72287039 -77229998 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 7 1136 1065 71 28 0 chr6 72287039 72287180 -77229857 + B1_Mm SINE Alu 3 147 0 7 1136 228 240 0 13 chr6 72287180 72287198 -77229839 + (CAAA)n Simple_repeat Simple_repeat 3 20 0 7 1136 632 236 93 9 chr6 72287213 72287370 -77229667 + B3A SINE B2 31 189 -27 7 1136 210 224 0 0 chr6 72287370 72287419 -77229618 + GA-rich Low_complexity Low_complexity 4 52 0 7 1136 315 0 0 0 chr6 72288854 72288889 -77228148 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1136 540 252 43 62 chr6 72288944 72289105 -77227932 + RSINE1 SINE B4 8 165 0 7 1136 407 276 37 15 chr6 72289159 72289295 -77227742 + B1F2 SINE Alu 4 142 -7 7 1136 252 188 21 0 chr6 72289676 72289724 -77227313 + ID4_ SINE ID 1 49 -34 7 1136 201 222 44 0 chr6 72289740 72289785 -77227252 + GA-rich Low_complexity Low_complexity 3 49 0 7 1136 261 0 0 0 chr6 72290134 72290163 -77226874 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1136 342 196 212 9 chr6 72290304 72290417 -77226620 + MER2 DNA MER2_type 74 209 -136 7 1136 234 227 0 0 chr6 72290465 72290509 -77226528 + B1F SINE Alu 85 128 -21 7 1136 639 238 0 98 chr6 72290646 72290809 -77226228 + B1_Mur1 SINE Alu 2 148 -1 7 1136 180 0 0 0 chr6 72290815 72290835 -77226202 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 7 1136 1004 133 0 14 chr6 72290837 72290982 -77226055 - B1_Mur3 SINE Alu -6 143 1 7 1136 313 225 136 12 chr6 72291043 72291124 -77225913 + BC1_Mm scRNA scRNA 2 92 -60 7 1136 382 271 47 0 chr6 72291519 72291626 -77225411 + PB1D10 SINE Alu 5 116 -1 7 1136 473 230 132 44 chr6 72291779 72291961 -77225076 + B3A SINE B2 1 198 0 7 1136 1070 49 0 18 chr6 72292016 72292182 -77224855 - MusHAL1 LINE L1 -1 2711 2549 7 1136 616 174 73 29 chr6 72292245 72292381 -77224656 + B1_Mus2 SINE Alu 6 147 0 7 1136 991 182 61 42 chr6 72292545 72292757 -77224280 + B3 SINE B2 1 216 0 7 1136 342 256 0 25 chr6 72292780 72292860 -77224177 - ID4 SINE ID 0 83 6 7 1136 253 281 254 0 chr6 72293003 72293117 -77223920 + ZP3AR Satellite Satellite 46 188 -24 7 1136 210 233 23 0 chr6 72293087 72293130 -77223907 + BC1_Mm scRNA scRNA 10 53 -99 7 1136 305 268 296 0 chr6 72293131 72293273 -77223764 + ZP3AR Satellite Satellite 5 188 -24 7 1136 210 233 23 0 chr6 72293243 72293286 -77223751 + BC1_Mm scRNA scRNA 10 53 -99 7 1136 665 250 40 0 chr6 72293641 72293789 -77223248 + RSINE1 SINE B4 4 157 -8 7 1136 441 210 109 31 chr6 72293796 72293918 -77223119 + B1_Mus1 SINE Alu 2 134 -14 7 1136 228 67 0 0 chr6 72293918 72293948 -77223089 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 7 1136 572 299 109 75 chr6 72294027 72294403 -77222634 - LTR40b LTR ERVL -3 459 71 7 1136 22 0 0 0 chr6 72294854 72294876 -77222161 + GC_rich Low_complexity Low_complexity 1 22 0 7 1136 307 276 23 0 chr6 72295675 72295762 -77221275 - L1MA10 LINE L1 -4 6330 6242 7 1136 296 280 48 29 chr6 72296016 72296125 -77220912 + B1F SINE Alu 24 121 -28 7 1136 726 252 117 15 chr6 72296355 72296560 -77220477 + B4A SINE B4 7 232 -60 7 1136 229 222 145 57 chr6 72296689 72296813 -77220224 + L1MA4A LINE L1 5804 5938 -365 7 1136 393 22 0 0 chr6 72296819 72296865 -77220172 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1136 203 241 0 18 chr6 72297497 72297552 -77219485 + (CCCGG)n Simple_repeat Simple_repeat 1 54 0 7 1136 24 32 0 0 chr6 72297721 72297752 -77219285 + GC_rich Low_complexity Low_complexity 1 31 0 7 1136 186 43 0 0 chr6 72297966 72297989 -77219048 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1136 397 217 76 0 chr6 72298180 72298272 -77218765 - MIR SINE MIR -147 115 17 7 1136 195 42 0 0 chr6 72298382 72298406 -77218631 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1136 225 244 10 131 chr6 72299543 72299642 -77217395 - MER5A DNA MER1_type -68 121 35 7 1136 694 153 33 99 chr6 72299818 72299970 -77217067 + B1_Mur3 SINE Alu 8 149 0 7 1136 579 201 19 168 chr6 72301862 72302023 -77215014 + B1F2 SINE Alu 4 140 -9 7 1136 822 85 55 0 chr6 72302037 72302201 -77214836 + (TC)n Simple_repeat Simple_repeat 2 174 0 7 1136 211 163 47 0 chr6 72302201 72302244 -77214793 + CT-rich Low_complexity Low_complexity 2 46 0 7 1136 309 307 11 33 chr6 72302924 72303015 -77214022 + B1F2 SINE Alu 37 125 -24 7 1136 357 184 253 0 chr6 72303692 72303779 -77213258 + PB1D9 SINE Alu 1 109 -11 7 1136 453 36 0 0 chr6 72303782 72303837 -77213200 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1136 378 269 75 11 chr6 72303942 72304036 -77213001 + PB1D10 SINE Alu 1 100 -17 7 1136 32 43 0 0 chr6 72305383 72305429 -77211608 + GC_rich Low_complexity Low_complexity 1 46 0 7 1136 334 228 120 0 chr6 72307220 72307312 -77209725 + PB1D10 SINE Alu 2 104 -13 7 1136 682 240 207 0 chr6 72307342 72307521 -77209516 + ID_B1 SINE B4 7 222 -2 7 1136 214 288 157 54 chr6 72307536 72307683 -77209354 - MIRb SINE MIR -28 240 79 7 1136 628 201 15 37 chr6 72309889 72310023 -77207014 + B1F2 SINE Alu 11 141 -8 7 1136 189 0 0 0 chr6 72311032 72311053 -77205984 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1136 488 133 190 20 chr6 72311666 72311766 -77205271 + PB1D9 SINE Alu 1 117 -3 7 1136 272 188 21 0 chr6 72311833 72311881 -77205156 - B1_Mus1 SINE Alu -98 50 2 7 1136 318 236 193 89 chr6 72312752 72312769 -77204268 + ID_B1 SINE B4 76 90 -134 7 1136 435 218 309 0 chr6 72312769 72312934 -77204103 + B3 SINE B2 1 216 0 7 1136 318 236 193 89 chr6 72312934 72313051 -77203986 + ID_B1 SINE B4 91 224 0 7 1136 587 182 0 52 chr6 72312940 72313056 -77203981 + PB1D9 SINE Alu 11 120 0 7 1136 21 36 0 0 chr6 72313215 72313243 -77203794 + AT_rich Low_complexity Low_complexity 1 28 0 7 1136 337 260 0 14 chr6 72313250 72313324 -77203713 + PB1D10 SINE Alu 40 112 -5 7 1136 216 0 0 0 chr6 72313653 72313677 -77203360 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 7 1136 1800 192 94 8 chr6 72313695 72314068 -77202969 + MTD LTR MaLR 1 405 -14 7 1136 232 273 163 16 chr6 72314079 72314202 -77202835 + MTD-int LTR MaLR 8 148 -1110 7 1136 1051 86 7 0 chr6 72314177 72314317 -77202720 - B2_Mm2 SINE B2 -53 142 2 7 1136 2277 185 29 68 chr6 72314318 72314619 -77202418 + MTD-int LTR MaLR 106 391 -867 7 1136 1262 110 21 5 chr6 72314619 72314811 -77202226 + B2_Mm2 SINE B2 1 195 0 7 1136 2277 231 42 78 chr6 72314811 72315452 -77201585 + MTD-int LTR MaLR 389 1010 -88 7 1136 1002 132 0 7 chr6 72315615 72315760 -77201277 + B1_Mur2 SINE Alu 1 144 -5 7 1136 1393 76 43 5 chr6 72315770 72315956 -77201081 + B2_Mm2 SINE B2 3 195 0 7 1136 1169 62 7 7 chr6 72315959 72316106 -77200931 + B1_Mus2 SINE Alu 1 147 0 7 1136 450 0 0 0 chr6 72316228 72316278 -77200759 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1136 598 238 6 120 chr6 72316278 72316436 -77200601 - RSINE1 SINE B4 -24 141 2 7 1136 1619 233 64 3 chr6 72316484 72316841 -77200196 - MTD LTR MaLR -23 396 18 7 1136 223 273 0 0 chr6 72316873 72316917 -77200120 - RSINE1 SINE B4 -120 45 2 7 1136 323 256 118 32 chr6 72317265 72317358 -77199679 - L1MEg LINE L1 -4140 1944 1844 7 1136 282 285 199 8 chr6 72317368 72317385 -77199652 - B4A SINE B4 -46 246 91 7 1136 640 211 0 0 chr6 72317385 72317499 -77199538 - PB1D9 SINE Alu -1 119 6 7 1136 540 243 93 20 chr6 72317536 72317687 -77199350 - B4 SINE B4 -66 226 65 8 1136 478 237 133 66 chr6 72317678 72317859 -77199178 - B4 SINE B4 -73 219 27 8 1136 327 49 0 0 chr6 72317918 72317959 -77199078 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1136 386 236 134 76 chr6 72317964 72318083 -77198954 - B3A SINE B2 -37 161 36 8 1136 186 71 0 0 chr6 72318111 72318139 -77198898 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 8 1136 932 152 207 11 chr6 72318142 72318321 -77198716 - B3 SINE B2 0 216 3 8 1136 759 246 131 15 chr6 72318324 72318522 -77198515 - ID_B1 SINE B4 0 224 4 8 1136 198 103 0 0 chr6 72318758 72318787 -77198250 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 8 1136 212 194 16 31 chr6 72318842 72318976 -77198061 + (TG)n Simple_repeat Simple_repeat 1 131 0 8 1136 354 23 0 0 chr6 72318976 72319019 -77198018 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 1136 217 244 43 128 chr6 72319155 72319249 -77197788 - B3 SINE B2 -129 87 2 8 1136 245 261 100 22 chr6 72319505 72319595 -77197442 + MamGypLTR2b LTR Gypsy 39 135 -787 8 1136 716 266 94 0 chr6 72319814 72320017 -77197020 - ID_B1 SINE B4 -1 223 2 8 1136 203 232 97 42 chr6 72321360 72321432 -77195605 - L3 LINE CR1 -2 4487 4412 8 1136 260 255 0 0 chr6 72322025 72322076 -77194961 - RSINE1 SINE B4 -28 137 87 8 1136 1071 82 7 14 chr6 72322092 72322240 -77194797 - B1_Mus2 SINE Alu 0 147 1 8 1136 433 267 9 47 chr6 72322243 72322349 -77194688 - RSINE1 SINE B4 -61 104 3 8 1136 270 115 0 0 chr6 72322352 72322404 -77194633 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1136 195 114 0 0 chr6 72322404 72322439 -77194598 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1136 713 304 62 39 chr6 72322502 72322759 -77194278 - B4A SINE B4 -26 266 4 8 1136 360 94 0 0 chr6 72322773 72322826 -77194211 + (TTCTC)n Simple_repeat Simple_repeat 2 54 0 8 1136 618 233 153 15 chr6 72322830 72323026 -77194011 - ID_B1 SINE B4 0 224 2 8 1136 344 245 82 94 chr6 72323670 72323737 -77193300 + ID_B1 SINE B4 24 201 -22 8 1136 348 198 73 105 chr6 72323737 72323859 -77193178 + B1F2 SINE Alu 4 121 -28 8 1136 957 246 63 21 chr6 72323859 72324096 -77192941 + B4A SINE B4 2 248 -44 8 1136 396 0 0 0 chr6 72324096 72324140 -77192897 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1136 564 89 0 0 chr6 72324678 72324757 -77192280 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 8 1136 328 250 0 24 chr6 72324865 72324947 -77192090 - B1_Mur2 SINE Alu -27 122 43 8 1136 247 278 132 125 chr6 72325044 72325196 -77191841 + B4A SINE B4 64 216 -76 8 1136 539 15 0 14 chr6 72325196 72325265 -77191772 + (CAAAA)n Simple_repeat Simple_repeat 2 69 0 8 1136 340 312 55 68 chr6 72325287 72325507 -77191530 + MIR SINE MIR 44 260 -2 8 1136 306 0 0 0 chr6 72325551 72325585 -77191452 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8 1136 639 185 63 16 chr6 72325592 72325718 -77191319 - B1_Mur4 SINE Alu -18 132 1 8 1136 1014 95 0 51 chr6 72325724 72325880 -77191157 - B1_Mus1 SINE Alu 0 148 1 8 1136 869 265 19 14 chr6 72325926 72326133 -77190904 - B3 SINE B2 0 216 9 8 1136 554 186 171 0 chr6 72326149 72326289 -77190748 + B3 SINE B2 1 164 -52 8 1136 347 319 11 0 chr6 72326284 72326375 -77190662 - B3A SINE B2 -105 93 2 8 1136 525 273 14 43 chr6 72326387 72326525 -77190512 - ID_B1 SINE B4 0 224 91 8 1136 803 266 21 16 chr6 72326576 72326767 -77190270 - B3 SINE B2 0 216 25 8 1136 647 265 50 25 chr6 72326774 72326975 -77190062 - B3 SINE B2 -8 208 3 8 1136 884 110 212 11 chr6 72327192 72327376 -77189661 - URR1B DNA MER1_type 0 225 5 8 1136 23 33 0 0 chr6 72327497 72327527 -77189510 + AT_rich Low_complexity Low_complexity 1 30 0 8 1136 1207 43 0 0 chr6 72327527 72327668 -77189369 + B1_Mm SINE Alu 1 141 -6 8 1136 312 27 0 0 chr6 72327671 72327708 -77189329 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 1136 291 282 35 0 chr6 72327708 72327793 -77189244 - PB1D7 SINE Alu -11 109 22 8 1136 226 337 36 12 chr6 72327850 72327934 -77189103 - MIRb SINE MIR -38 230 145 8 1136 283 207 204 107 chr6 72328156 72328259 -77188778 + PB1D9 SINE Alu 2 114 -6 8 1136 571 241 51 0 chr6 72328271 72328408 -77188629 + B1F2 SINE Alu 3 146 -3 8 1136 250 297 0 0 chr6 72328432 72328496 -77188541 + ID_B1 SINE B4 160 223 -1 8 1136 985 191 59 15 chr6 72328530 72328732 -77188305 + B3 SINE B2 1 211 -5 8 1136 940 264 62 8 chr6 72328750 72329010 -77188027 + B4A SINE B4 1 274 -18 8 1136 390 258 21 0 chr6 72330067 72330164 -77186873 - MIRb SINE MIR -70 198 100 8 1136 1649 27 0 0 chr6 72330884 72331070 -77185967 + B2_Mm1a SINE B2 2 187 -6 8 1136 306 182 73 0 chr6 72331071 72331126 -77185911 + RSINE1 SINE B4 72 130 -35 8 1136 805 198 12 178 chr6 72331751 72332009 -77185028 + B3 SINE B2 1 215 -1 8 1136 452 312 96 6 chr6 72332085 72332262 -77184775 + ID_B1 SINE B4 32 224 0 8 1136 387 262 17 162 chr6 72332274 72332294 -77184743 + ID_B1 SINE B4 77 224 0 8 1136 594 206 13 111 chr6 72332294 72332447 -77184590 + B1F SINE Alu 12 149 0 8 1136 626 185 0 7 chr6 72332447 72332583 -77184454 + GA-rich Low_complexity Low_complexity 1 135 0 8 1136 1122 108 0 0 chr6 72332673 72332821 -77184216 - B1_Mus1 SINE Alu 0 148 1 8 1136 634 259 206 5 chr6 72333841 72334035 -77183002 + B4A SINE B4 2 234 -58 8 1136 287 246 62 0 chr6 72334117 72334182 -77182855 + B4A SINE B4 220 288 -4 8 1136 455 234 352 19 chr6 72334289 72334599 -77182438 + Lx9 LINE L1 7217 7629 -15 8 1136 509 255 127 51 chr6 72334639 72334767 -77182270 + B3A SINE B2 27 174 -24 8 1136 1374 74 0 26 chr6 72334767 72334960 -77182077 - B2_Mm2 SINE B2 -7 188 1 8 1136 509 255 127 51 chr6 72334960 72334988 -77182049 + B3A SINE B2 175 194 -4 8 1136 494 318 7 7 chr6 72335876 72336031 -77181006 - RSINE1 SINE B4 0 165 11 8 1136 367 182 12 38 chr6 72336067 72336147 -77180890 - PB1D9 SINE Alu 0 120 43 8 1136 294 300 39 20 chr6 72336134 72336236 -77180801 - MER115 DNA Tip100 -120 573 470 8 1136 308 211 40 0 chr6 72336253 72336329 -77180708 - ID_B1 SINE B4 0 224 146 8 1136 239 0 32 0 chr6 72336329 72336360 -77180677 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 8 1136 1089 30 61 0 chr6 72336361 72336493 -77180544 - B1_Mus2 SINE Alu -6 141 2 8 1136 501 287 80 7 chr6 72336531 72336682 -77180355 - RSINE1 SINE B4 0 165 4 8 1136 714 264 13 6 chr6 72336682 72336838 -77180199 - ID_B1 SINE B4 -67 157 1 8 1136 1167 51 0 0 chr6 72337083 72337220 -77179817 + B1_Mus2 SINE Alu 1 137 -10 8 1136 1246 93 0 14 chr6 72337220 72337507 -77179530 + (GAAA)n Simple_repeat Simple_repeat 1 282 0 8 1136 662 232 97 100 chr6 72338579 72338838 -77178199 - B4 SINE B4 -30 262 5 8 1136 898 252 33 0 chr6 72338839 72339053 -77177984 - ID_B1 SINE B4 -1 223 3 8 1136 438 238 11 153 chr6 72339069 72339258 -77177779 - RSINE1 SINE B4 0 165 4 8 1136 212 22 89 0 chr6 72339352 72339397 -77177640 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 8 1136 622 249 5 95 chr6 72340922 72341122 -77175915 + B3A SINE B2 1 182 -16 8 1136 21 36 0 0 chr6 72341781 72341809 -77175228 + AT_rich Low_complexity Low_complexity 1 28 0 8 1136 388 306 63 48 chr6 72341843 72341870 -77175167 - B2_Mm2 SINE B2 -3 192 161 8 1136 1188 68 0 0 chr6 72341870 72342017 -77175020 - B1_Mm SINE Alu 0 147 1 8 1136 388 306 63 48 chr6 72342017 72342043 -77174994 - B2_Mm2 SINE B2 -35 160 132 8 1136 429 36 0 0 chr6 72342043 72342098 -77174939 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1136 592 222 64 3 chr6 72342098 72342232 -77174805 - B3A SINE B2 -65 133 1 8 1136 253 114 0 0 chr6 72342329 72342364 -77174673 - U2 snRNA snRNA -150 38 4 8 1136 788 218 47 0 chr6 72342425 72342595 -77174442 + B3A SINE B2 5 182 -16 8 1136 1251 34 0 7 chr6 72342613 72342762 -77174275 + B1_Mus1 SINE Alu 1 148 0 8 1136 309 250 172 0 chr6 72342845 72342973 -77174064 + B4 SINE B4 69 218 -74 8 1136 553 168 108 8 chr6 72342863 72342983 -77174054 + B1_Mur2 SINE Alu 7 138 -11 8 1136 232 163 20 39 chr6 72342997 72343048 -77173989 + BC1_Mm scRNA scRNA 17 66 -86 8 1136 247 325 120 0 chr6 72343086 72343203 -77173834 + MER33 DNA MER1_type 5 135 -189 8 1136 317 280 0 0 chr6 72343252 72343327 -77173710 + PB1D10 SINE Alu 31 105 -12 8 1136 272 158 18 0 chr6 72343327 72343384 -77173653 + (CAGT)n Simple_repeat Simple_repeat 1 58 0 8 1136 233 277 65 20 chr6 72343519 72343613 -77173424 - ID4_ SINE ID -57 95 1 8 1136 440 287 0 18 chr6 72343651 72343761 -77173276 - B3A SINE B2 -87 111 4 8 1136 441 0 0 0 chr6 72343774 72343823 -77173214 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 8 1136 459 289 30 0 chr6 72343823 72343958 -77173079 - B1F SINE Alu -10 139 1 8 1136 471 216 0 0 chr6 72343967 72344078 -77172959 + CT-rich Low_complexity Low_complexity 4 114 0 8 1136 412 192 141 0 chr6 72344279 72344378 -77172659 - ID_B1 SINE B4 -10 214 102 8 1136 298 208 283 0 chr6 72344700 72344806 -77172231 + B1F SINE Alu 13 148 -1 8 1136 210 242 0 31 chr6 72344810 72344822 -77172215 + A-rich Low_complexity Low_complexity 1 12 0 8 1136 278 299 0 71 chr6 72344822 72344948 -77172089 + PB1D10 SINE Alu 1 117 0 8 1136 210 242 0 31 chr6 72344948 72344999 -77172038 + A-rich Low_complexity Low_complexity 13 62 0 8 1136 397 301 59 15 chr6 72345104 72345239 -77171798 + B1F SINE Alu 1 141 -8 9 1136 195 42 0 0 chr6 72345751 72345775 -77171262 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1136 330 340 45 36 chr6 72346258 72346368 -77170669 - B1F SINE Alu -6 111 1 9 1136 355 276 57 0 chr6 72346386 72346499 -77170538 + B1_Mur2 SINE Alu 24 142 -7 9 1136 1690 26 0 5 chr6 72346508 72346701 -77170336 + B2_Mm1t SINE B2 2 193 0 9 1136 212 217 0 21 chr6 72347088 72347135 -77169902 + PB1D7 SINE Alu 9 54 -66 9 1136 362 245 45 36 chr6 72347196 72347306 -77169731 + PB1D7 SINE Alu 9 119 -1 9 1136 365 0 22 0 chr6 72347438 72347483 -77169554 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 9 1136 1117 29 7 0 chr6 72347483 72347614 -77169423 - B1_Mus1 SINE Alu -9 139 8 9 1136 799 196 96 20 chr6 72347625 72347823 -77169214 - B3 SINE B2 0 216 4 9 1136 451 0 34 0 chr6 72347865 72347924 -77169113 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1136 880 163 7 0 chr6 72347993 72348134 -77168903 - B1_Mus1 SINE Alu 0 148 7 9 1136 467 330 77 31 chr6 72348124 72348318 -77168719 - B4 SINE B4 -88 204 2 9 1136 291 28 0 0 chr6 72348327 72348363 -77168674 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1136 432 51 0 0 chr6 72348992 72349051 -77167986 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1136 515 239 106 0 chr6 72349055 72349168 -77167869 - RSINE1 SINE B4 -37 128 4 9 1136 1234 195 162 18 chr6 72349176 72349510 -77167527 - ORR1C2 LTR MaLR 0 384 3 9 1136 195 42 0 0 chr6 72349625 72349649 -77167388 + (TCC)n Simple_repeat Simple_repeat 1 24 0 9 1136 763 225 0 174 chr6 72349663 72349905 -77167132 - ID_B1 SINE B4 -13 211 12 9 1136 266 209 116 29 chr6 72350279 72350348 -77166689 + Charlie1a DNA MER1_type 84 158 -1297 9 1136 1504 54 5 5 chr6 72350520 72350707 -77166330 + B2_Mm2 SINE B2 1 187 -8 9 1136 3798 59 19 0 chr6 72350738 72351211 -77165826 + L1_Mus1 LINE L1 6086 6567 0 9 1136 475 296 81 31 chr6 72351311 72351534 -77165503 + RMER2 LTR ERV1 334 567 0 9 1136 242 253 135 52 chr6 72351534 72351619 -77165418 + Charlie1a DNA MER1_type 178 270 -1185 9 17 643 250 14 28 chr6 72351643 72351787 -77165250 - ID_B1 SINE B4 -5 219 78 9 1137 23 68 0 0 chr6 72351793 72351837 -77165200 + AT_rich Low_complexity Low_complexity 1 44 0 9 1137 451 325 42 0 chr6 72351859 72351979 -77165058 + B1_Mur2 SINE Alu 10 134 -15 9 1137 338 281 38 8 chr6 72351982 72352115 -77164922 - B3A SINE B2 -35 163 9 9 1137 582 257 35 7 chr6 72352114 72352255 -77164782 - B3A SINE B2 -48 150 6 9 1137 26 30 0 0 chr6 72352277 72352310 -77164727 + AT_rich Low_complexity Low_complexity 1 33 0 9 1137 432 55 0 0 chr6 72352339 72352394 -77164643 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 9 1137 850 226 84 15 chr6 72352415 72352439 -77164598 - B3 SINE B2 0 216 184 9 1137 1161 42 28 7 chr6 72352439 72352582 -77164455 - B1_Mm SINE Alu 0 147 2 9 1137 850 226 84 15 chr6 72352582 72352759 -77164278 - B3 SINE B2 -33 183 1 9 1137 658 279 36 31 chr6 72352760 72352854 -77164183 - B3A SINE B2 0 198 103 9 1137 4052 145 61 33 chr6 72352854 72353349 -77163688 - RMER6A LTR ERVK 0 756 243 9 1137 967 69 123 0 chr6 72353349 72353479 -77163558 - B1_Mus2 SINE Alu 0 147 2 9 1137 4052 145 61 33 chr6 72353479 72353718 -77163319 - RMER6A LTR ERVK -514 242 1 9 1137 658 279 36 31 chr6 72353718 72353815 -77163222 - B3A SINE B2 -96 102 6 9 1137 704 265 100 0 chr6 72353823 72354023 -77163014 - ID_B1 SINE B4 -3 221 2 9 1137 456 332 61 51 chr6 72354063 72354320 -77162717 - B4 SINE B4 -11 281 48 9 1137 678 178 9 0 chr6 72354371 72354478 -77162559 - B1_Mur2 SINE Alu -21 128 21 9 1137 285 241 0 121 chr6 72354394 72354493 -77162544 - MT2B LTR ERVL -344 257 171 9 1137 439 252 19 27 chr6 72354533 72354669 -77162368 - B1_Mur2 SINE Alu -8 141 6 9 1137 1170 55 14 0 chr6 72354705 72354850 -77162187 - B1_Mm SINE Alu 0 147 1 9 1137 376 222 0 0 chr6 72354885 72354948 -77162089 + PB1D9 SINE Alu 2 64 -56 9 1137 2735 236 56 2 chr6 72354972 72355576 -77161461 + Lx6 LINE L1 6251 6887 -573 9 1137 1366 230 97 37 chr6 72355581 72355933 -77161104 + Lx6 LINE L1 7019 7391 -69 9 1137 1461 204 105 8 chr6 72356173 72356505 -77160532 + MTD LTR MaLR 13 419 0 9 1137 343 330 116 74 chr6 72356983 72357056 -77159981 - B4A SINE B4 0 292 228 9 1137 1147 95 0 0 chr6 72357056 72357203 -77159834 - B1_Mus2 SINE Alu 0 147 1 9 1137 1067 172 54 5 chr6 72357208 72357412 -77159625 - B3 SINE B2 -1 215 2 9 1137 343 330 116 74 chr6 72357412 72357590 -77159447 - B4A SINE B4 -65 227 24 9 1137 463 288 136 53 chr6 72357620 72357789 -77159248 - B3A SINE B2 -6 192 10 9 1137 649 176 34 0 chr6 72358264 72358383 -77158654 + B3A SINE B2 2 124 -74 9 1137 231 36 0 0 chr6 72358387 72358415 -77158622 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1137 766 59 10 0 chr6 72358448 72358550 -77158487 + B2_Mm1a SINE B2 91 193 0 9 1137 1577 42 11 0 chr6 72358565 72358756 -77158281 + B2_Mm1t SINE B2 1 193 0 9 1137 674 188 109 36 chr6 72358872 72359010 -77158027 - B1_Mur4 SINE Alu -1 149 2 9 1137 220 270 46 31 chr6 72359369 72359434 -77157603 - ID4 SINE ID -4 79 14 9 1137 236 185 35 69 chr6 72359550 72359608 -77157429 - ID_B1 SINE B4 -79 145 90 9 1137 571 264 24 61 chr6 72359648 72359813 -77157224 - B3A SINE B2 -1 197 39 9 1137 1237 35 7 0 chr6 72359905 72360050 -77156987 - B1_Mm SINE Alu 0 147 2 9 1137 669 224 30 30 chr6 72360087 72360285 -77156752 + B3A SINE B2 1 198 0 9 1137 226 250 83 0 chr6 72360304 72360364 -77156673 + ID4_ SINE ID 4 68 -15 9 1137 1173 68 0 20 chr6 72360417 72360567 -77156470 + B1_Mus2 SINE Alu 1 147 0 9 1137 843 274 63 19 chr6 72360890 72361181 -77155856 + RMER1B Other Other 21 353 -713 9 1137 917 123 147 0 chr6 72361258 72361428 -77155609 + B2_Mm2 SINE B2 1 195 0 9 1137 229 197 119 15 chr6 72361429 72361496 -77155541 + Charlie1a DNA MER1_type 1381 1454 -1 9 1137 4500 40 0 0 chr6 72361747 72362279 -77154758 + L1Md_F2 LINE L1 5055 5586 -297 9 1137 8254 46 2 4 chr6 72362279 72363275 -77153762 + L1Md_F2 LINE L1 5587 6580 -2 9 1137 1400 87 16 0 chr6 72363286 72363470 -77153567 + B2_Mm2 SINE B2 2 188 -7 9 1137 1308 85 0 28 chr6 72363470 72363642 -77153395 - B2_Mm2 SINE B2 -24 171 1 9 1137 255 222 0 132 chr6 72363805 72363888 -77153149 + B1_Mm SINE Alu 21 92 -55 9 1137 376 248 197 8 chr6 72363888 72364010 -77153027 + B1_Mur2 SINE Alu 4 148 -1 9 1137 1422 205 194 9 chr6 72364953 72365303 -77151734 - MTD LTR MaLR 0 419 5 9 1137 639 195 25 126 chr6 72365307 72365453 -77151584 - B3A SINE B2 -17 181 37 9 1137 1370 70 26 26 chr6 72365453 72365643 -77151394 + B2_Mm2 SINE B2 3 192 -3 9 1137 639 195 25 126 chr6 72365643 72365695 -77151342 - B3A SINE B2 -162 36 3 9 1137 900 239 59 66 chr6 72365869 72366156 -77150881 - B4A SINE B4 -6 286 2 9 1137 274 306 101 10 chr6 72366164 72366263 -77150774 - PB1D10 SINE Alu -8 109 2 9 1137 334 306 75 80 chr6 72366394 72366582 -77150455 + MER20 DNA MER1_type 33 219 0 9 1137 203 208 54 54 chr6 72366766 72366822 -77150215 - MIRb SINE MIR -46 216 161 9 1137 701 154 7 97 chr6 72366852 72366996 -77150041 - B1_Mur1 SINE Alu 0 149 19 9 1137 497 305 99 45 chr6 72367224 72367447 -77149590 - B4A SINE B4 -55 237 3 9 1137 1839 49 138 8 chr6 72367468 72367736 -77149301 - RLTR22_Mus LTR ERVK -4 1804 1502 9 1137 626 216 43 4 chr6 72368598 72368732 -77148305 - B1F SINE Alu -12 135 1 9 1137 429 278 0 0 chr6 72368798 72368906 -77148131 - RSINE1 SINE B4 -54 111 4 9 1137 273 288 135 8 chr6 72369044 72369170 -77147867 + L3 LINE CR1 4126 4267 -222 9 1137 288 0 0 0 chr6 72369422 72369454 -77147583 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1137 341 205 100 82 chr6 72369726 72369808 -77147229 + PB1D7 SINE Alu 1 93 -27 9 1137 465 19 0 0 chr6 72369808 72369862 -77147175 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1137 341 196 41 103 chr6 72369862 72369896 -77147141 + PB1D7 SINE Alu 94 119 -1 9 1137 308 221 14 29 chr6 72370207 72370277 -77146760 - ID4 SINE ID -14 69 1 9 1137 249 231 215 0 chr6 72370338 72370403 -77146634 + PB1D10 SINE Alu 11 89 -28 9 1137 990 223 39 10 chr6 72370427 72370635 -77146402 - B3 SINE B2 0 216 3 9 1137 584 212 80 7 chr6 72370666 72370804 -77146233 - B1_Mur2 SINE Alu 0 149 2 9 1137 436 271 0 4 chr6 72371102 72371219 -77145818 - B1F2 SINE Alu -5 115 1 9 1137 1159 61 0 0 chr6 72371237 72371384 -77145653 - B1_Mus2 SINE Alu 0 147 1 9 1137 2391 90 15 9 chr6 72371474 72371799 -77145238 - ORR1A2 LTR MaLR 0 327 1 9 1137 798 221 48 34 chr6 72371806 72372012 -77145025 + Tigger5 DNA MER2_type 2157 2365 -41 9 1137 516 259 35 28 chr6 72372099 72372242 -77144795 + B1F1 SINE Alu 3 146 -3 9 1137 244 0 56 0 chr6 72372530 72372566 -77144471 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 9 1137 312 349 18 92 chr6 72372568 72372732 -77144305 - B4A SINE B4 -125 167 16 9 1137 802 135 56 14 chr6 72372858 72373001 -77144036 - B1_Mur4 SINE Alu -1 149 1 9 1137 264 214 386 0 chr6 72373031 72373101 -77143936 + PB1D9 SINE Alu 18 114 -6 9 1137 348 24 0 0 chr6 72373114 72373155 -77143882 + (TTA)n Simple_repeat Simple_repeat 3 43 0 9 1137 325 347 81 49 chr6 72373170 72373450 -77143587 - RSINE1 SINE B4 -1 291 1 9 1137 782 227 46 51 chr6 72373679 72373874 -77143163 - B3A SINE B2 0 198 5 9 1137 863 221 24 68 chr6 72374242 72374490 -77142547 - MTC LTR MaLR -14 407 171 9 1137 528 163 30 10 chr6 72374519 72374618 -77142419 - B1F2 SINE Alu -2 147 47 1 1137 1140 91 80 6 chr6 72374646 72374822 -77142215 - B2_Mm2 SINE B2 -3 192 4 1 1137 241 283 149 58 chr6 72375007 72375161 -77141876 - B3 SINE B2 -3 213 46 1 1137 554 261 0 0 chr6 72375056 72375167 -77141870 - RSINE1 SINE B4 -13 152 42 1 1137 874 209 42 26 chr6 72375219 72375411 -77141626 - ID_B1 SINE B4 0 224 30 1 1137 566 290 0 20 chr6 72376150 72376298 -77140739 + ID_B1 SINE B4 3 147 -77 1 1137 1192 21 35 7 chr6 72376685 72376968 -77140069 + (GGAA)n Simple_repeat Simple_repeat 1 290 0 1 1137 329 213 92 13 chr6 72377303 72377379 -77139658 - ID4_ SINE ID 0 83 2 1 1137 207 69 0 0 chr6 72377412 72377441 -77139596 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1137 417 295 81 16 chr6 72377460 72377584 -77139453 - RSINE1 SINE B4 -31 134 3 1 1137 348 270 89 10 chr6 72380240 72380341 -77136696 - PB1D7 SINE Alu -11 109 1 1 1137 210 71 0 0 chr6 72380395 72380423 -77136614 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1137 1053 84 0 14 chr6 72380427 72380572 -77136465 - B1_Mus2 SINE Alu 0 147 5 1 1137 255 244 0 0 chr6 72380626 72380671 -77136366 - B1_Mur4 SINE Alu -105 45 1 1 1137 233 294 29 0 chr6 72380795 72380863 -77136174 - MIR SINE MIR -13 249 180 1 1137 265 290 87 48 chr6 72382084 72382221 -77134816 - B1_Mus1 SINE Alu -10 139 2 1 1137 590 63 127 11 chr6 72382333 72382439 -77134598 + B1_Mus1 SINE Alu 2 118 -2 1 1137 356 209 30 122 chr6 72385410 72385541 -77131496 - PB1D9 SINE Alu 0 120 2 1 1137 275 278 105 53 chr6 72385593 72385707 -77131330 + B1F SINE Alu 1 120 -29 1 1137 296 271 98 59 chr6 72386535 72386637 -77130400 + Tigger7 DNA MER2_type 290 395 -2096 1 1137 261 270 156 11 chr6 72387209 72387299 -77129738 - PB1 SINE Alu 0 127 25 1 1137 669 107 29 0 chr6 72387617 72387720 -77129317 - B1_Mur3 SINE Alu 0 149 44 1 1137 368 147 14 42 chr6 72387660 72387731 -77129306 - MT2B LTR ERVL -344 257 189 1 1137 439 147 172 13 chr6 72387990 72388106 -77128931 - PB1D9 SINE Alu 0 147 1 1 1137 233 305 101 37 chr6 72388155 72388264 -77128773 - PB1D10 SINE Alu -1 116 1 1 1137 235 118 0 0 chr6 72391118 72391152 -77125885 + B3 SINE B2 1 34 -182 1 1137 456 374 81 0 chr6 72391153 72391375 -77125662 - MamRep605 Unknown Unknown -275 601 362 1 1137 189 209 45 23 chr6 72391467 72391511 -77125526 + MIR SINE MIR 111 155 -107 1 1137 652 239 0 21 chr6 72391648 72391793 -77125244 - B1F1 SINE Alu -7 142 1 1 1137 1279 34 0 0 chr6 72391973 72392120 -77124917 + B1_Mus2 SINE Alu 1 147 0 1 1137 276 236 31 23 chr6 72392503 72392525 -77124512 + ORR1B1-int LTR MaLR 624 646 -863 1 1137 970 81 0 0 chr6 72392525 72392649 -77124388 + B1_Mus1 SINE Alu 1 124 -24 1 1137 207 0 0 0 chr6 72392649 72392672 -77124365 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1137 527 199 64 35 chr6 72392672 72392686 -77124351 + ID_B1 SINE B4 203 224 0 1 1137 1093 53 0 0 chr6 72392754 72392887 -77124150 + B1_Mus2 SINE Alu 1 133 -14 1 1137 618 14 0 0 chr6 72392888 72392959 -77124078 + (GAAA)n Simple_repeat Simple_repeat 1 71 0 1 1137 255 301 85 42 chr6 72393460 72393551 -77123486 + B1F1 SINE Alu 6 101 -48 1 1137 1946 164 167 67 chr6 72393551 72394029 -77123008 - MT2A LTR ERVL 0 533 8 1 1137 481 272 79 22 chr6 72394049 72394188 -77122849 + ID_B1 SINE B4 78 224 0 1 1137 1196 62 0 7 chr6 72394499 72394646 -77122391 + B1_Mus1 SINE Alu 2 147 -1 1 1137 316 232 280 0 chr6 72394659 72394784 -77122253 - RSINE1 SINE B4 -3 162 3 1 1137 186 304 190 0 chr6 72394946 72395025 -77122012 - MIR SINE MIR -69 139 46 1 1137 267 231 21 52 chr6 72395144 72395240 -77121797 - ID_B1 SINE B4 -38 186 94 1 1137 516 16 0 0 chr6 72395306 72395367 -77121670 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1137 291 183 0 0 chr6 72395367 72395449 -77121588 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1137 201 129 0 0 chr6 72395472 72395503 -77121534 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1137 379 289 41 0 chr6 72395584 72395681 -77121356 - B1F2 SINE Alu -42 107 7 1 1137 1067 84 13 0 chr6 72395684 72395839 -77121198 + (TTTC)n Simple_repeat Simple_repeat 3 159 0 1 1137 1136 56 0 0 chr6 72395841 72395983 -77121054 - B1_Mus1 SINE Alu -6 142 1 1 1137 342 0 0 0 chr6 72396041 72396079 -77120958 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1137 321 253 0 149 chr6 72396399 72396506 -77120531 + MLT1B LTR MaLR 4 94 -296 1 1137 642 217 0 9 chr6 72396482 72396598 -77120439 - PB1D10 SINE Alu -2 115 1 1 1137 229 324 14 0 chr6 72396642 72396713 -77120324 - ID4_ SINE ID -11 72 1 1 1137 226 170 21 0 chr6 72396715 72396762 -77120275 + (CAGA)n Simple_repeat Simple_repeat 2 49 0 1 1137 412 240 21 10 chr6 72396765 72396862 -77120175 - PB1D10 SINE Alu -8 109 12 1 1137 1022 263 143 9 chr6 72397018 72397333 -77119704 - ORR1D2 LTR MaLR -4 366 10 1 1137 413 337 43 80 chr6 72399017 72399232 -77117805 + RMER20B LTR ERVK 215 419 -208 1 1137 204 77 0 0 chr6 72399646 72399672 -77117365 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1137 377 153 14 0 chr6 72399672 72399744 -77117293 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1137 242 231 0 0 chr6 72399815 72399854 -77117183 + RSINE1 SINE B4 110 148 -17 1 1137 7973 106 10 8 chr6 72399868 72401029 -77116008 - Lx8 LINE L1 -1549 5924 4762 1 1137 5030 70 5 3 chr6 72401046 72401689 -77115348 + L1_Mus3 LINE L1 5989 6633 -5 1 1137 1153 75 7 0 chr6 72401689 72401835 -77115202 + B1_Mus2 SINE Alu 1 147 0 1 1137 328 259 24 24 chr6 72401852 72401935 -77115102 + L1MEg LINE L1 1882 1964 -4120 1 1137 607 200 0 0 chr6 72401955 72402055 -77114982 + PB1D9 SINE Alu 15 114 -6 1 1137 238 232 52 35 chr6 72402117 72402175 -77114862 + PB1D10 SINE Alu 23 81 -36 1 1137 662 299 9 59 chr6 72402176 72402396 -77114641 + B3 SINE B2 2 210 -6 1 1137 188 67 33 0 chr6 72402396 72402426 -77114611 + (GGA)n Simple_repeat Simple_repeat 1 31 0 1 1137 440 283 182 36 chr6 72402430 72402595 -77114442 + ID_B1 SINE B4 4 192 -32 1 1137 318 250 26 115 chr6 72402515 72402628 -77114409 + B1F1 SINE Alu 11 113 -36 1 1137 189 0 0 0 chr6 72402691 72402712 -77114325 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1137 678 239 14 0 chr6 72403091 72403229 -77113808 - RSINE1 SINE B4 -23 142 3 1 1137 1290 111 11 0 chr6 72403877 72404066 -77112971 - B2_Mm1t SINE B2 -1 192 2 1 1137 283 227 14 43 chr6 72404066 72404135 -77112902 - B1F1 SINE Alu 0 149 83 1 1137 626 242 38 8 chr6 72404154 72404287 -77112750 - ID_B1 SINE B4 -8 216 80 1 1137 219 36 0 0 chr6 72405626 72405654 -77111383 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1137 312 200 0 16 chr6 72405714 72405775 -77111262 - RMER15 LTR ERVL -113 462 403 1 1137 2246 285 100 21 chr6 72405816 72406633 -77110404 - Lx8 LINE L1 -226 7247 6366 1 1137 219 260 26 150 chr6 72406855 72406867 -77110170 + PB1D7 SINE Alu 22 115 0 1 1137 283 247 21 73 chr6 72406867 72406963 -77110074 + ID_B1 SINE B4 132 222 -2 1 1137 2386 22 4 0 chr6 72407428 72407704 -77109333 - L1Md_F3 LINE L1 -560 6024 5748 1 1137 4952 36 0 2 chr6 72407705 72408288 -77108749 + L1Md_F3 LINE L1 6003 6584 0 1 1137 1078 102 0 7 chr6 72408310 72408458 -77108579 + B1_Mus1 SINE Alu 2 148 0 1 1137 609 219 34 7 chr6 72409035 72409182 -77107855 + RSINE1 SINE B4 3 153 -12 1 1137 574 318 38 31 chr6 72409454 72409613 -77107424 + RSINE1 SINE B4 6 165 0 1 1137 1263 94 0 0 chr6 72409890 72410070 -77106967 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1137 220 209 0 23 chr6 72410070 72410114 -77106923 + CT-rich Low_complexity Low_complexity 3 45 0 1 1137 408 239 119 8 chr6 72410712 72410830 -77106207 + B1F SINE Alu 9 139 -10 1 1137 250 386 33 43 chr6 72410842 72410934 -77106103 + ID_B1 SINE B4 80 170 -54 1 1137 239 360 51 59 chr6 72410844 72410962 -77106075 + PB1D10 SINE Alu 1 117 0 1 1137 235 222 0 100 chr6 72410979 72411039 -77105998 - PB1D9 SINE Alu -55 65 12 1 1137 237 368 13 0 chr6 72411066 72411142 -77105895 - ID SINE ID -146 78 2 1 1137 1121 64 35 0 chr6 72411403 72411544 -77105493 + B1_Mus2 SINE Alu 1 146 -1 1 1137 759 100 0 0 chr6 72411544 72411654 -77105383 + (GGA)n Simple_repeat Simple_repeat 3 112 0 1 1137 1078 101 0 0 chr6 72411854 72412002 -77105035 - B1_Mus1 SINE Alu 0 148 1 1 1137 445 185 0 36 chr6 72412002 72412086 -77104951 - B1_Mur1 SINE Alu -2 147 67 1 1137 375 331 0 21 chr6 72412163 72412305 -77104732 - B1F2 SINE Alu -6 143 5 1 1137 753 191 16 87 chr6 72412364 72412423 -77104614 + ID_B1 SINE B4 54 108 -116 1 1137 189 0 0 0 chr6 72412423 72412444 -77104593 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1137 753 191 16 87 chr6 72412444 72412568 -77104469 + ID_B1 SINE B4 109 224 0 1 1137 1368 139 56 32 chr6 72413879 72414131 -77102906 + RMER4B LTR ERVK 1 258 -327 1 1137 530 285 55 7 chr6 72414442 72414587 -77102450 - RSINE1 SINE B4 -2 163 12 1 1137 715 132 97 24 chr6 72416156 72416280 -77100757 - B3 SINE B2 -81 135 3 1 1137 475 264 0 0 chr6 72416606 72416693 -77100344 - RSINE1 SINE B4 -75 90 4 1 1137 609 14 0 0 chr6 72416695 72416765 -77100272 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 1 1137 975 115 0 0 chr6 72416765 72416912 -77100125 + (TC)n Simple_repeat Simple_repeat 2 149 0 1 1137 422 277 45 0 chr6 72416915 72417027 -77100010 - B3 SINE B2 -12 204 88 1 1137 2384 167 161 81 chr6 72417032 72417666 -77099371 - RMER6C LTR ERVK -5 685 2 1 1137 206 231 0 0 chr6 72417750 72417789 -77099248 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 1 1137 430 247 0 0 chr6 72417795 72417880 -77099157 - B3 SINE B2 -68 148 64 1 1137 943 240 61 0 chr6 72417913 72418049 -77098988 - B3 SINE B2 0 216 81 1 1137 279 0 0 0 chr6 72418049 72418080 -77098957 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1137 943 240 61 0 chr6 72418080 72418139 -77098898 - B3 SINE B2 -136 80 10 1 1137 314 259 12 0 chr6 72418253 72418334 -77098703 - ID4 SINE ID 0 83 2 1 1137 277 111 0 0 chr6 72418498 72418543 -77098494 - L1MB4 LINE L1 -1 6179 6135 1 1137 1179 74 0 0 chr6 72418543 72418691 -77098346 + B1_Mus1 SINE Alu 1 148 0 1 1137 326 294 74 79 chr6 72419163 72419366 -77097671 + RLTR26 LTR ERVK 216 417 -225 1 1137 212 265 0 20 chr6 72419575 72419625 -77097412 - ID4 SINE ID -28 55 7 1 1137 336 209 80 23 chr6 72419658 72419746 -77097291 - B1F SINE Alu -2 147 55 1 1137 321 284 124 47 chr6 72419746 72419787 -77097250 - ID_B1 SINE B4 -2 222 84 1 1137 908 262 65 12 chr6 72419788 72420112 -77096925 - L1MB2 LINE L1 -211 5960 5620 1 1137 586 279 28 14 chr6 72420112 72420271 -77096766 + ID_B1 SINE B4 81 245 -47 1 1137 477 248 173 31 chr6 72420279 72420393 -77096644 + Lx8 LINE L1 7206 7328 -145 1 1137 1311 74 0 0 chr6 72420393 72420747 -77096290 + (CA)n Simple_repeat Simple_repeat 1 354 0 1 1137 477 248 173 31 chr6 72420747 72420854 -77096183 + Lx8 LINE L1 7329 7459 -14 1 1137 244 241 16 49 chr6 72420924 72420985 -77096052 - ID4_ SINE ID 0 83 25 1 1137 1172 191 4 65 chr6 72421168 72421398 -77095639 + B3 SINE B2 1 216 0 1 1137 1721 16 0 0 chr6 72421753 72421942 -77095095 - B2_Mm1a SINE B2 -3 190 2 1 1137 22 0 0 0 chr6 72421995 72422017 -77095020 + AT_rich Low_complexity Low_complexity 1 22 0 1 1137 492 18 0 0 chr6 72422083 72422140 -77094897 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1137 1432 54 21 26 chr6 72422160 72422350 -77094687 + B2_Mm2 SINE B2 1 189 -6 1 1137 255 244 230 24 chr6 72422532 72422658 -77094379 - L2a LINE L2 -10 3416 3265 1 1137 251 159 171 14 chr6 72422674 72422744 -77094293 + L1M4 LINE L1 5541 5621 -553 1 1137 778 264 16 6 chr6 72422746 72422929 -77094108 + B3 SINE B2 2 186 -30 1 1137 734 150 112 22 chr6 72423086 72423260 -77093777 - B3 SINE B2 -10 185 1 1 1137 1239 34 0 7 chr6 72424790 72424937 -77092100 + B1_Mus2 SINE Alu 2 147 0 1 1137 610 227 8 8 chr6 72424953 72425086 -77091951 + B4 SINE B4 48 180 -112 1 1137 414 0 0 0 chr6 72425154 72425200 -77091837 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1137 340 169 30 30 chr6 72426275 72426342 -77090695 + ID SINE ID 15 81 -143 1 1137 514 299 0 13 chr6 72426369 72426518 -77090519 + B1F SINE Alu 1 147 -2 1 1137 512 254 7 113 chr6 72426520 72426671 -77090366 + ID_B1 SINE B4 7 141 -83 1 1137 359 191 143 0 chr6 72426618 72426702 -77090335 + PB1D10 SINE Alu 8 103 -14 1 1137 366 23 0 0 chr6 72426702 72426745 -77090292 + (CAAT)n Simple_repeat Simple_repeat 4 46 0 1 1137 349 150 17 0 chr6 72426797 72426857 -77090180 - ID SINE ID -157 67 7 1 1137 625 305 56 22 chr6 72427072 72427250 -77089787 - ID_B1 SINE B4 -1 223 40 1 1137 285 257 57 38 chr6 72427417 72427522 -77089515 - PB1D7 SINE Alu -13 107 1 1 1137 359 236 22 196 chr6 72427697 72427881 -77089156 + RSINE1 SINE B4 14 165 0 1 1137 360 294 78 16 chr6 72428634 72428762 -77088275 + MIR SINE MIR 75 210 -52 1 1137 694 186 8 0 chr6 72428773 72428897 -77088140 - B1_Mur2 SINE Alu -1 148 24 1 1137 180 111 0 0 chr6 72428938 72428965 -77088072 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1137 1234 54 0 0 chr6 72428965 72429112 -77087925 - B1_Mm SINE Alu 0 147 1 1 1137 359 261 110 63 chr6 72429136 72429263 -77087774 + B4A SINE B4 157 289 -3 1 1137 914 214 73 0 chr6 72429413 72429605 -77087432 + B3 SINE B2 1 206 -10 1 1137 1054 78 0 0 chr6 72429865 72429994 -77087043 + B1_Mus1 SINE Alu 1 129 -19 1 1137 2354 165 28 44 chr6 72429994 72430425 -77086612 - RMER19B LTR ERVK -57 845 422 1 1137 1412 207 32 88 chr6 72430425 72430854 -77086183 + RMER16 LTR ERVK 1 533 0 1 1137 2157 119 88 128 chr6 72430855 72431299 -77085738 - RMER19B LTR ERVK -476 426 1 1 1137 628 225 33 8 chr6 72431667 72431788 -77085249 - RSINE1 SINE B4 -39 126 3 1 1137 738 106 37 118 chr6 72431796 72431957 -77085080 - B2_Mm2 SINE B2 -1 194 47 1 1137 1102 240 109 29 chr6 72432356 72432703 -77084334 - RLTR19-int LTR ERVK 0 3238 2864 1 1137 1248 203 55 29 chr6 72432754 72433042 -77083995 - RLTR19-int LTR ERVK -341 2897 2628 1 1137 4935 186 89 57 chr6 72433083 72434410 -77082627 - RLTR19-int LTR ERVK -2438 3699 2330 1 1137 228 59 0 0 chr6 72434442 72434476 -77082561 - B1_Mus2 SINE Alu 0 147 114 1 1137 300 111 0 0 chr6 72434981 72435026 -77082011 + (GGA)n Simple_repeat Simple_repeat 3 47 0 1 1137 1576 207 173 54 chr6 72435272 72435753 -77081284 - RodERV21-int LTR ERV1 -3991 1000 463 1 1137 487 143 111 10 chr6 72435844 72435943 -77081094 - RodERV21-int LTR ERV1 -4688 303 195 1 1137 267 200 51 39 chr6 72435939 72436017 -77081020 - RodERV21-int LTR ERV1 -4905 86 8 1 1137 295 67 133 0 chr6 72436173 72436218 -77080819 - B3 SINE B2 -165 51 1 1 1137 669 186 57 7 chr6 72436237 72436378 -77080659 + B1F2 SINE Alu 2 149 0 1 1137 287 250 24 59 chr6 72436379 72436464 -77080573 + B4 SINE B4 208 289 -3 1 1137 533 267 52 22 chr6 72436713 72436724 -77080313 - B1F2 SINE Alu -2 147 139 1 1137 261 0 0 0 chr6 72436724 72436753 -77080284 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1137 533 267 52 22 chr6 72436753 72436875 -77080162 - B1F2 SINE Alu -11 138 10 1 1137 198 0 0 0 chr6 72437001 72437023 -77080014 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1 1137 314 219 202 42 chr6 72437023 72437132 -77079905 - B4A SINE B4 -10 282 155 1 1137 237 234 0 0 chr6 72437102 72437149 -77079888 + PB1D9 SINE Alu 69 115 -5 1 1137 1175 62 7 0 chr6 72437154 72437300 -77079737 + B1_Mus2 SINE Alu 1 147 0 1 1137 234 0 0 0 chr6 72437310 72437336 -77079701 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 1137 563 172 225 8 chr6 72437746 72437875 -77079162 + RSINE1 SINE B4 3 159 -6 1 1137 477 76 0 0 chr6 72438665 72438731 -77078306 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1137 375 286 96 23 chr6 72439418 72439636 -77077401 + L1M7 LINE L1 1325 1558 -4660 1 1137 566 235 7 29 chr6 72439636 72439772 -77077265 + B1_Mur2 SINE Alu 3 135 -14 1 1137 315 318 171 19 chr6 72439847 72440116 -77076921 + HAL1b LINE L1 1260 1569 -440 1 1137 300 348 54 0 chr6 72440178 72440290 -77076747 - ID_B1 SINE B4 -23 201 84 1 1137 626 109 10 0 chr6 72440315 72440416 -77076621 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 1137 1110 82 0 0 chr6 72440416 72440562 -77076475 - B1_Mus1 SINE Alu 0 148 3 1 1137 236 103 0 65 chr6 72440624 72440686 -77076351 + CT-rich Low_complexity Low_complexity 1 58 0 1 1137 1045 187 10 70 chr6 72440693 72440760 -77076277 - B3 SINE B2 -27 189 128 1 1137 1116 92 0 0 chr6 72440760 72440902 -77076135 + B1_Mus1 SINE Alu 1 142 -6 1 1137 771 42 0 0 chr6 72440907 72441002 -77076035 + (GAAAA)n Simple_repeat Simple_repeat 2 96 0 1 1137 1045 187 10 70 chr6 72441002 72441129 -77075908 - B3 SINE B2 -89 127 1 1 1137 399 296 86 11 chr6 72441252 72441426 -77075611 - L1M5 LINE L1 -453 5671 5485 1 1137 353 22 22 0 chr6 72441724 72441770 -77075267 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 1 1137 563 235 98 0 chr6 72441771 72441903 -77075134 - B1F SINE Alu 0 149 5 1 1137 26 30 0 0 chr6 72442003 72442036 -77075001 + AT_rich Low_complexity Low_complexity 1 33 0 1 1137 511 183 234 44 chr6 72442039 72442176 -77074861 - RSINE1 SINE B4 0 165 3 1 1137 369 269 71 0 chr6 72442242 72442383 -77074654 + L1M2 LINE L1 5455 5605 -695 1 1137 914 130 7 33 chr6 72442389 72442540 -77074497 + B1_Mur3 SINE Alu 3 149 0 1 1137 21 0 0 0 chr6 72442551 72442572 -77074465 + AT_rich Low_complexity Low_complexity 1 21 0 1 1137 370 256 44 43 chr6 72442616 72442630 -77074407 + PB1D10 SINE Alu 7 40 -80 1 1137 383 229 14 0 chr6 72442630 72442700 -77074337 + ID_B1 SINE B4 100 170 -54 1 1137 370 256 44 43 chr6 72442700 72442729 -77074308 + PB1D10 SINE Alu 41 120 0 1 1137 1136 253 20 60 chr6 72442730 72443029 -77074008 + B4A SINE B4 2 288 -4 1 1137 345 368 87 24 chr6 72443140 72443346 -77073691 + MLT1J LTR MaLR 90 308 -204 1 1137 852 207 245 39 chr6 72443498 72443804 -77073233 - ORR1D2 LTR MaLR -1 369 1 1 1137 635 261 65 0 chr6 72444038 72444191 -77072846 + RSINE1 SINE B4 3 165 0 1 1137 252 0 0 0 chr6 72444197 72444225 -77072812 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 1 1137 21 57 0 0 chr6 72444893 72444928 -77072109 + AT_rich Low_complexity Low_complexity 1 35 0 1 1137 204 139 28 0 chr6 72444976 72445012 -77072025 + A-rich Low_complexity Low_complexity 2 38 0 1 1137 373 263 74 0 chr6 72445022 72445117 -77071920 + PB1D10 SINE Alu 1 102 -15 1 1137 224 315 0 0 chr6 72445246 72445300 -77071737 + ID4_ SINE ID 15 68 -15 1 1137 407 264 44 0 chr6 72445350 72445441 -77071596 + ID_B1 SINE B4 1 95 -129 1 1137 922 136 0 0 chr6 72445733 72445865 -77071172 + B1_Mur3 SINE Alu 5 136 -13 1 1137 229 286 0 87 chr6 72445998 72446067 -77070970 + ID SINE ID 16 78 -146 1 1137 1731 145 50 99 chr6 72446072 72446455 -77070582 - ORR1B1 LTR MaLR -8 386 23 1 1137 380 253 113 26 chr6 72446565 72446682 -77070355 - RSINE1 SINE B4 -35 130 2 1 1137 248 143 0 0 chr6 72446771 72446806 -77070231 - ID SINE ID -151 73 39 1 1137 227 207 220 17 chr6 72446806 72446830 -77070207 - ID4 SINE ID -11 72 2 1 1137 490 327 34 26 chr6 72446912 72447176 -77069861 - HAL1 LINE L1 -419 2088 1823 1 1137 644 350 80 39 chr6 72447178 72447825 -77069212 - HAL1 LINE L1 -1663 844 171 1 1137 231 352 14 0 chr6 72447826 72447897 -77069140 - ID4_ SINE ID -3 80 9 1 1137 921 252 66 5 chr6 72448078 72448289 -77068748 + ID_B1 SINE B4 1 224 0 1 1137 936 218 10 29 chr6 72448310 72448518 -77068519 + B3 SINE B2 3 206 -10 1 1137 480 259 121 17 chr6 72448567 72448740 -77068297 - B3A SINE B2 -3 195 5 1 1137 1620 42 0 0 chr6 72448757 72448949 -77068088 - B2_Mm1a SINE B2 0 193 2 1 1137 374 218 11 33 chr6 72449568 72449651 -77067386 + RSINE1 SINE B4 12 92 -73 1 1137 788 189 0 0 chr6 72449651 72449778 -77067259 + B3 SINE B2 1 127 -89 1 1137 751 212 7 20 chr6 72449832 72449981 -77067056 + B1_Mur1 SINE Alu 1 147 -2 1 1137 530 320 32 4 chr6 72449987 72450238 -77066799 + L1_Mur3 LINE L1 5187 5444 -436 1 1137 910 234 51 0 chr6 72450238 72450413 -77066624 + B3 SINE B2 28 211 -5 1 1137 1321 82 33 0 chr6 72450633 72450653 -77066384 - B2_Mm2 SINE B2 -6 189 169 1 1137 513 0 0 0 chr6 72450653 72450710 -77066327 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 1 1137 1321 82 33 0 chr6 72450710 72450871 -77066166 - B2_Mm2 SINE B2 -27 168 3 1 1137 1032 149 0 13 chr6 72450872 72451022 -77066015 - B1_Mus1 SINE Alu 0 148 1 1 1137 780 229 24 12 chr6 72451022 72451184 -77065853 - B3A SINE B2 -1 197 34 1 1137 939 253 142 4 chr6 72451184 72451438 -77065599 - MTD LTR MaLR 0 419 131 1 1137 263 229 0 0 chr6 72451443 72451491 -77065546 - ID_B1 SINE B4 -60 164 117 1 1137 825 195 0 0 chr6 72451782 72452009 -77065028 + (CA)n Simple_repeat Simple_repeat 1 227 0 1 1137 193 250 83 56 chr6 72452376 72452448 -77064589 + MIRb SINE MIR 43 116 -152 1 1137 295 309 78 23 chr6 72452521 72452650 -77064387 - L2a LINE L2 -16 3410 3275 1 1137 1258 228 23 72 chr6 72452680 72452987 -77064050 - B4A SINE B4 0 292 1 1 1137 451 284 59 15 chr6 72452993 72453129 -77063908 - ID_B1 SINE B4 -1 223 82 1 1137 725 234 7 0 chr6 72453144 72453281 -77063756 - B1_Mur4 SINE Alu 0 150 13 1 1137 1014 148 7 0 chr6 72453282 72453418 -77063619 + B1_Mur4 SINE Alu 1 137 -13 1 1137 243 0 0 0 chr6 72453418 72453445 -77063592 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1 1137 1014 148 7 0 chr6 72453445 72453457 -77063580 + B1_Mur4 SINE Alu 138 149 -1 1 1137 238 275 102 82 chr6 72453458 72453664 -77063373 - L2a LINE L2 -657 2762 2553 1 1137 1160 202 10 0 chr6 72453664 72453867 -77063170 + ID_B1 SINE B4 5 209 -15 1 1137 1277 129 76 5 chr6 72454249 72454460 -77062577 - URR1A DNA MER1_type 0 226 1 1 1137 4146 143 125 70 chr6 72454913 72455361 -77061676 - RMER19B LTR ERVK 0 902 429 1 1137 1593 0 0 0 chr6 72455361 72455538 -77061499 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 1137 4146 143 125 70 chr6 72455538 72455944 -77061093 - RMER19B LTR ERVK -474 428 1 1 1137 1191 48 14 0 chr6 72456948 72457093 -77059944 - B1_Mm SINE Alu 0 147 1 1 1137 736 233 81 32 chr6 72457110 72457296 -77059741 - B3A SINE B2 -1 197 3 1 1137 413 219 70 109 chr6 72457339 72457381 -77059656 - ID_B1 SINE B4 0 224 179 1 1137 2269 156 31 3 chr6 72457381 72457735 -77059302 - ORR1B2 LTR MaLR 0 367 4 1 1137 413 219 70 109 chr6 72457735 72457820 -77059217 - ID_B1 SINE B4 -46 178 102 1 1137 460 235 0 0 chr6 72458371 72458452 -77058585 - ID4 SINE ID -1 82 2 1 1137 263 271 0 17 chr6 72459221 72459281 -77057756 - B1_Mur2 SINE Alu -53 96 38 1 1137 336 103 0 0 chr6 72459281 72459339 -77057698 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1137 441 0 0 0 chr6 72459513 72459562 -77057475 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1137 1149 82 7 0 chr6 72459648 72459794 -77057243 - B1_Mus2 SINE Alu 0 147 1 1 1137 809 169 7 27 chr6 72459823 72459969 -77057068 - B1_Mus1 SINE Alu 0 148 6 1 1137 299 277 28 126 chr6 72459859 72460074 -77056963 - MT2B2 LTR ERVL -319 265 72 1 1137 348 290 32 0 chr6 72460002 72460095 -77056942 - B1F SINE Alu -53 96 1 1 1137 358 219 0 68 chr6 72460118 72460206 -77056831 + ID4 SINE ID 2 83 0 1 1137 356 278 10 20 chr6 72460249 72460348 -77056689 + PB1D10 SINE Alu 17 114 -3 1 1137 275 245 19 0 chr6 72460351 72460404 -77056633 + ID4_ SINE ID 17 70 -13 1 1137 1067 261 5 0 chr6 72461080 72461298 -77055739 + ID_B1 SINE B4 3 221 -3 1 1137 23 0 0 0 chr6 72461334 72461357 -77055680 + AT_rich Low_complexity Low_complexity 1 23 0 1 1137 266 250 0 0 chr6 72461702 72461758 -77055279 - RSINE1 SINE B4 -33 132 77 1 1137 320 226 85 11 chr6 72461962 72462056 -77054981 - B1F1 SINE Alu -4 145 45 1 1137 324 262 65 122 chr6 72463476 72463615 -77053422 + B3A SINE B2 65 195 -21 1 1137 208 274 78 52 chr6 72463644 72463721 -77053316 - MIRm SINE MIR -2 274 196 1 1137 402 21 0 0 chr6 72464514 72464561 -77052476 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1137 522 259 35 0 chr6 72464567 72464683 -77052354 - PB1D9 SINE Alu 0 120 1 1 1137 555 250 170 21 chr6 72464707 72464895 -77052142 - B3 SINE B2 0 216 1 1 1137 383 228 281 62 chr6 72464896 72465074 -77051963 - B4 SINE B4 -66 226 10 1 1137 357 82 0 0 chr6 72466624 72466673 -77050364 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 1 1137 1220 120 54 0 chr6 72466673 72466857 -77050180 - B2_Mm2 SINE B2 0 195 2 1 1137 740 264 0 33 chr6 72466881 72467034 -77050003 - B1_Mur1 SINE Alu 0 149 2 1 1137 257 304 82 114 chr6 72468142 72468361 -77048676 + MARNA DNA Mariner 181 392 -194 1 1137 224 283 0 19 chr6 72468975 72469029 -77048008 + polypurine Low_complexity Low_complexity 2 54 0 1 1137 278 145 62 46 chr6 72469133 72469198 -77047839 + PB1D10 SINE Alu 42 107 -10 1 1137 219 217 0 0 chr6 72469674 72469720 -77047317 + G-rich Low_complexity Low_complexity 1 46 0 1 1137 783 152 0 105 chr6 72472141 72472303 -77044734 + B1_Mur2 SINE Alu 5 149 0 1 1137 240 215 15 0 chr6 72472305 72472370 -77044667 + A-rich Low_complexity Low_complexity 4 69 0 1 1137 182 379 11 33 chr6 72472446 72472536 -77044501 - MIR SINE MIR -55 207 120 1 1137 796 296 108 38 chr6 72472539 72472883 -77044154 - MLT1B LTR MaLR -2 388 21 1 1137 764 236 157 0 chr6 72472927 72473118 -77043919 + ID_B1 SINE B4 2 222 -2 1 1137 775 104 87 8 chr6 72473945 72474071 -77042966 + B1_Mur4 SINE Alu 15 150 0 1 1137 969 61 122 0 chr6 72474082 72474213 -77042824 + B1_Mus2 SINE Alu 1 147 0 1 1137 400 186 155 10 chr6 72474575 72474693 -77042344 + B1F1 SINE Alu 7 146 -3 1 1137 231 191 0 0 chr6 72475453 72475495 -77041542 + ID_B1 SINE B4 180 221 -3 1 1137 489 235 28 83 chr6 72475529 72475673 -77041364 + ID_B1 SINE B4 81 216 -8 1 1137 335 89 0 18 chr6 72475759 72475816 -77041221 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1137 724 215 84 11 chr6 72475843 72476022 -77041015 + B3A SINE B2 1 192 -6 1 1137 603 196 0 0 chr6 72476027 72476129 -77040908 + B3A SINE B2 3 104 -94 1 1137 638 145 88 111 chr6 72476124 72476144 -77040893 - B2_Mm2 SINE B2 -11 184 170 1 1137 1233 101 56 0 chr6 72476144 72476323 -77040714 + B2_Mm2 SINE B2 2 190 -5 1 1137 638 145 88 111 chr6 72476323 72476473 -77040564 - B2_Mm2 SINE B2 -26 169 18 1 1137 1470 42 10 45 chr6 72476516 72476716 -77040321 - B2_Mm2 SINE B2 0 195 3 1 1137 297 0 0 0 chr6 72476771 72476804 -77040233 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1137 751 187 28 41 chr6 72476854 72476999 -77040038 + B1_Mur2 SINE Alu 5 147 -2 1 1137 736 203 8 8 chr6 72477528 72477662 -77039375 - B1F2 SINE Alu -13 136 3 1 1137 3214 39 39 0 chr6 72477869 72478250 -77038787 - MTA_Mm LTR MaLR 0 396 1 1 1137 273 75 0 0 chr6 72479190 72479230 -77037807 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1137 1368 77 0 97 chr6 72479356 72479530 -77037507 - B2_Mm2 SINE B2 0 195 42 1 1137 4665 42 2 0 chr6 72479530 72480081 -77036956 - L1Md_F2 LINE L1 0 6582 6031 1 1137 1368 77 0 97 chr6 72480081 72480122 -77036915 - B2_Mm2 SINE B2 -154 41 1 1 1137 966 219 35 10 chr6 72480149 72480347 -77036690 + B3 SINE B2 8 210 -6 1 1137 535 299 71 50 chr6 72480347 72480542 -77036495 - B3A SINE B2 -9 186 11 1 1137 182 37 0 36 chr6 72480557 72480585 -77036452 + (TGG)n Simple_repeat Simple_repeat 1 27 0 1 1137 189 0 0 0 chr6 72480589 72480610 -77036427 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1 1137 351 270 11 33 chr6 72480615 72480707 -77036330 - B4A SINE B4 -62 230 141 1 1137 491 202 395 0 chr6 72480754 72480883 -77036154 + ID_B1 SINE B4 45 224 0 1 1137 495 231 58 0 chr6 72480903 72481024 -77036013 + ID_B1 SINE B4 87 214 -10 1 1137 224 203 71 119 chr6 72481104 72481188 -77035849 + B4 SINE B4 1 80 -212 1 1137 628 220 71 50 chr6 72481116 72481298 -77035739 + B3A SINE B2 13 198 0 1 1137 1708 16 0 10 chr6 72481333 72481528 -77035509 - B2_Mm1a SINE B2 0 193 1 1 1137 21 36 0 0 chr6 72481529 72481557 -77035480 + AT_rich Low_complexity Low_complexity 1 28 0 1 1137 410 200 185 76 chr6 72481559 72481678 -77035359 + RSINE1 SINE B4 15 146 -19 1 1137 283 72 17 35 chr6 72481688 72481735 -77035302 + (TTTTTG)n Simple_repeat Simple_repeat 1 46 0 1 1137 1170 55 21 0 chr6 72481735 72481880 -77035157 - B1_Mus1 SINE Alu 0 148 1 1 1137 283 72 17 35 chr6 72481880 72481890 -77035147 + (TTTTTG)n Simple_repeat Simple_repeat 3 12 0 1 1137 553 88 20 0 chr6 72482032 72482134 -77034903 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1137 880 230 0 12 chr6 72482156 72482323 -77034714 + B3 SINE B2 1 165 -51 1 1137 297 0 0 0 chr6 72482325 72482358 -77034679 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1137 331 223 58 23 chr6 72482360 72482458 -77034579 - PB1D10 SINE Alu -12 105 6 1 142 208 302 11 65 chr6 72482751 72482843 -77034194 + L2a LINE L2 3310 3396 -30 1 1138 626 0 14 0 chr6 72483290 72483364 -77033673 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1138 241 342 46 92 chr6 72483364 72483406 -77033631 - B3A SINE B2 -31 167 2 1 1138 497 290 8 8 chr6 72483406 72483538 -77033499 - B4 SINE B4 -159 133 2 1 1138 450 189 0 0 chr6 72483905 72484016 -77033021 + CT-rich Low_complexity Low_complexity 1 111 0 1 1138 2576 115 67 67 chr6 72484479 72484945 -77032092 + RMER4A LTR ERVK 1 466 0 1 1138 788 289 63 0 chr6 72485107 72485297 -77031740 + B3 SINE B2 1 202 -14 1 1138 782 96 177 39 chr6 72485521 72485651 -77031386 - B1_Mus1 SINE Alu 0 148 1 1 1138 248 214 236 0 chr6 72485778 72485867 -77031170 - PB1D10 SINE Alu -7 110 1 1 1138 652 241 29 7 chr6 72485987 72486125 -77030912 - ID_B1 SINE B4 -3 221 81 1 1138 312 333 24 79 chr6 72486100 72486227 -77030810 + RSINE1 SINE B4 30 149 -16 1 1138 707 269 21 92 chr6 72486289 72486527 -77030510 + B4A SINE B4 4 224 -68 1 1138 814 109 55 0 chr6 72486402 72486530 -77030507 + B1_Mur4 SINE Alu 16 150 0 1 1138 433 202 106 0 chr6 72486649 72486743 -77030294 + B1F SINE Alu 44 147 -2 1 1138 951 142 0 20 chr6 72486813 72486964 -77030073 + B1_Mur3 SINE Alu 1 148 -1 1 1138 324 171 388 7 chr6 72487037 72487174 -77029863 - B3 SINE B2 -8 190 2 1 1138 456 206 0 101 chr6 72487254 72487267 -77029770 - B1_Mus2 SINE Alu 0 147 136 1 1138 734 26 71 0 chr6 72487267 72487380 -77029657 + (TTCCC)n Simple_repeat Simple_repeat 3 123 0 1 1138 456 206 0 101 chr6 72487380 72487485 -77029552 - B1_Mus2 SINE Alu -12 135 41 1 1138 802 50 0 0 chr6 72487596 72487695 -77029342 + B1_Mm SINE Alu 46 144 -3 1 1138 244 25 75 0 chr6 72487695 72487735 -77029302 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1138 841 219 89 54 chr6 72487738 72488018 -77029019 + RMER10A LTR ERVL 46 335 -107 1 1138 2571 146 69 80 chr6 72489381 72489916 -77027121 + RLTR24 LTR ERV1 1 529 0 1 1138 357 43 0 0 chr6 72489931 72489978 -77027059 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1138 658 218 239 60 chr6 72489979 72490122 -77026915 - B4A SINE B4 -9 283 90 1 1138 1456 73 16 5 chr6 72490122 72490315 -77026722 - B2_Mm2 SINE B2 0 195 1 1 1138 658 218 239 60 chr6 72490315 72490405 -77026632 - B4A SINE B4 -203 89 8 1 1138 521 282 0 0 chr6 72491184 72491301 -77025736 + PB1D7 SINE Alu 2 118 -2 1 1138 878 207 18 6 chr6 72491301 72491466 -77025571 + B3 SINE B2 47 213 -3 1 1138 432 249 61 6 chr6 72491497 72491604 -77025433 + PB1D10 SINE Alu 10 115 -34 1 1138 771 286 56 19 chr6 72491611 72491825 -77025212 + B4A SINE B4 6 227 -65 1 1138 1043 249 0 0 chr6 72491826 72492035 -77025002 + B3 SINE B2 1 209 -7 1 1138 301 239 23 155 chr6 72492049 72492178 -77024859 + MT2B LTR ERVL 153 264 -337 1 1138 847 161 0 0 chr6 72492063 72492193 -77024844 + B1_Mur4 SINE Alu 1 130 -20 1 1138 250 246 172 35 chr6 72492085 72492283 -77024754 - RMER17D2 LTR ERVK -209 600 376 1 1138 371 233 14 0 chr6 72492254 72492327 -77024710 + B4A SINE B4 217 290 -2 1 1138 301 242 186 29 chr6 72492433 72492535 -77024502 + PB1D9 SINE Alu 3 120 0 1 1138 201 39 0 0 chr6 72492615 72492641 -77024396 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1138 731 269 16 16 chr6 72492852 72493037 -77024000 + ID_B1 SINE B4 33 217 -7 1 1138 220 307 9 90 chr6 72493063 72493174 -77023863 - L2c LINE L2 -31 3356 3255 1 1138 226 218 18 0 chr6 72493197 72493252 -77023785 + L1ME2z LINE L1 6050 6105 -339 1 1138 419 248 176 0 chr6 72493261 72493386 -77023651 + B1_Mur2 SINE Alu 1 147 -2 1 1138 270 0 0 0 chr6 72493807 72493837 -77023200 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1138 409 173 147 46 chr6 72493839 72493948 -77023089 - ID_B1 SINE B4 -102 122 3 1 1138 440 262 24 106 chr6 72493948 72493981 -77023056 + ID_B1 SINE B4 74 183 -109 1 1138 800 107 15 44 chr6 72493981 72494118 -77022919 + B1_Mur3 SINE Alu 17 149 0 1 1138 440 262 24 106 chr6 72494118 72494143 -77022894 + ID_B1 SINE B4 184 250 -42 1 1138 651 265 11 6 chr6 72494755 72494897 -77022140 - ID_B1 SINE B4 -71 221 85 1 1138 265 140 0 34 chr6 72494913 72494972 -77022065 + CT-rich Low_complexity Low_complexity 3 59 0 1 1138 716 237 28 34 chr6 72494975 72495154 -77021883 - B3A SINE B2 -20 178 1 1 1138 504 0 0 0 chr6 72495160 72495216 -77021821 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1 1138 582 246 38 15 chr6 72495548 72495680 -77021357 + RSINE1 SINE B4 12 146 -19 1 1138 201 316 13 26 chr6 72495784 72495862 -77021175 - MIRc SINE MIR -120 148 72 1 1138 406 331 44 60 chr6 72495874 72496057 -77020980 - ID_B1 SINE B4 -42 182 3 1 1138 212 286 32 0 chr6 72496065 72496128 -77020909 - ID SINE ID -141 83 19 1 1138 357 24 0 0 chr6 72496128 72496170 -77020867 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1138 585 171 77 0 chr6 72496192 72496309 -77020728 - B1_Mur3 SINE Alu -19 130 5 1 1138 1127 200 5 23 chr6 72496487 72496707 -77020330 - B3 SINE B2 0 216 1 1 1138 321 26 0 0 chr6 72496839 72496877 -77020160 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1138 2117 180 41 5 chr6 72496878 72497246 -77019791 - MTD LTR MaLR -28 391 11 1 1138 742 244 12 0 chr6 72497268 72497432 -77019605 - B3A SINE B2 -24 174 9 1 1138 397 286 57 9 chr6 72497438 72497544 -77019493 - RSINE1 SINE B4 -44 121 11 1 1138 400 311 38 0 chr6 72497624 72497730 -77019307 + PB1D10 SINE Alu 6 115 -2 1 1138 828 109 22 14 chr6 72498056 72498195 -77018842 + URR1B DNA MER1_type 86 225 0 1 1138 552 119 47 0 chr6 72498361 72498465 -77018572 - PB1D9 SINE Alu -38 111 1 1 1138 534 261 21 21 chr6 72498502 72498643 -77018394 + B1F SINE Alu 7 147 -2 1 1138 471 292 94 7 chr6 72498642 72498780 -77018257 + ID_B1 SINE B4 73 222 -2 1 1138 276 30 0 0 chr6 72498791 72498824 -77018213 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1138 487 153 4 0 chr6 72498859 72498949 -77018088 + B1_Mus2 SINE Alu 57 149 0 1 1138 335 157 0 43 chr6 72498949 72499042 -77017995 + GA-rich Low_complexity Low_complexity 1 89 0 1 1138 259 164 31 47 chr6 72500642 72500706 -77016331 + ID4 SINE ID 10 72 -11 1 1138 249 308 138 14 chr6 72500735 72500880 -77016157 + L3 LINE CR1 4326 4488 -1 2 1138 230 292 15 0 chr6 72501494 72501559 -77015478 - ID4_ SINE ID -16 67 2 3 1138 212 354 39 58 chr6 72501568 72501724 -77015313 - ID_B1 SINE B4 -2 222 70 4 1138 649 204 139 25 chr6 72501895 72502096 -77014941 + ID_B1 SINE B4 1 224 0 5 1138 1299 263 44 22 chr6 72502104 72502559 -77014478 - MER31A LTR ERV1 -6 479 15 6 1138 194 33 0 62 chr6 72503100 72503132 -77013905 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 7 1138 453 227 11 2 chr6 72503680 72503787 -77013250 - B1_Mur1 SINE Alu -21 126 21 8 1138 423 0 0 0 chr6 72503829 72503876 -77013161 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 1138 1304 77 0 27 chr6 72503876 72504063 -77012974 - B2_Mm2 SINE B2 -13 182 1 1 1138 381 308 40 27 chr6 72504126 72504276 -77012761 - RSINE1 SINE B4 0 165 14 1 1138 498 17 0 0 chr6 72504297 72504356 -77012681 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 1 1138 965 124 25 6 chr6 72504356 72504508 -77012529 - B2_Mm2 SINE B2 -13 182 27 1 1138 1075 94 65 32 chr6 72504516 72504702 -77012335 - B2_Mm1t SINE B2 -1 192 1 1 1138 216 97 0 0 chr6 72504710 72504741 -77012296 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 1 1138 705 268 50 87 chr6 72504741 72505149 -77011888 - ID_B1 SINE B4 -46 246 1 1 1138 240 412 6 35 chr6 72506349 72506460 -77010577 - MER2 DNA MER2_type -23 322 217 1 1138 366 227 23 85 chr6 72506460 72506574 -77010463 - RMER30 DNA MER1_type -1 201 94 1 1138 1220 113 5 44 chr6 72506574 72506777 -77010260 - B2_Mm2 SINE B2 0 195 1 1 1138 345 265 24 104 chr6 72506777 72506826 -77010211 + Charlie12 DNA MER1_type 109 151 -2722 2 1138 1212 40 0 0 chr6 72506835 72506983 -77010054 + B1_Mus1 SINE Alu 1 148 0 2 1138 654 250 52 7 chr6 72507046 72507199 -77009838 - B3A SINE B2 -34 164 5 2 1138 548 333 0 19 chr6 72507323 72507482 -77009555 - B3 SINE B2 -27 189 34 2 1138 526 230 51 3 chr6 72507484 72507616 -77009421 - B1_Mur3 SINE Alu -13 136 2 2 1138 311 259 83 9 chr6 72508960 72509069 -77007968 - MER5A DNA MER1_type -26 163 47 2 1138 236 324 84 28 chr6 72509437 72509580 -77007457 - B3A SINE B2 0 198 48 2 1138 1264 82 50 0 chr6 72509600 72509782 -77007255 - B2_Mm2 SINE B2 -3 192 2 2 1138 301 164 0 62 chr6 72509783 72509848 -77007189 - B3A SINE B2 -136 62 2 2 1138 620 168 228 23 chr6 72509848 72509996 -77007041 - ID_B1 SINE B4 -34 190 8 2 1138 692 216 66 38 chr6 72510351 72510534 -77006503 - B3 SINE B2 0 216 29 3 1138 319 306 87 7 chr6 72511388 72511526 -77005511 - B1F1 SINE Alu 0 149 1 3 1138 670 235 45 7 chr6 72511526 72511558 -77005479 - ID SINE ID -138 86 49 3 1138 1250 87 6 0 chr6 72511624 72511797 -77005240 - B2_Mm1a SINE B2 -19 174 1 3 1138 647 209 8 23 chr6 72511806 72511938 -77005099 - B1F SINE Alu -6 143 14 3 1138 183 100 0 0 chr6 72512190 72512220 -77004817 + (C)n Simple_repeat Simple_repeat 1 30 0 3 1138 480 18 0 0 chr6 72512401 72512458 -77004579 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1138 476 287 52 0 chr6 72513637 72513752 -77003285 + ID_B1 SINE B4 100 220 -4 3 1138 255 31 0 0 chr6 72514663 72514695 -77002342 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1138 468 65 48 72 chr6 72514708 72514874 -77002163 + (TG)n Simple_repeat Simple_repeat 2 163 0 3 1138 315 48 45 67 chr6 72514990 72515079 -77001958 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 1138 231 197 16 49 chr6 72515091 72515214 -77001823 + (GTGTG)n Simple_repeat Simple_repeat 4 122 0 4 1138 357 141 34 39 chr6 72515134 72515378 -77001659 + (TG)n Simple_repeat Simple_repeat 1 242 0 4 1138 346 308 25 19 chr6 72515517 72515676 -77001361 + RSINE1 SINE B4 1 160 -5 4 1138 924 129 0 20 chr6 72516960 72517110 -76999927 - B1_Mur3 SINE Alu -2 147 1 4 1138 188 60 27 82 chr6 72517270 72517343 -76999694 + T-rich Low_complexity Low_complexity 4 72 0 4 1138 1205 21 7 0 chr6 72517370 72517515 -76999522 - B1_Mus2 SINE Alu -1 146 1 4 1138 1080 141 75 10 chr6 72517528 72517728 -76999309 - B3 SINE B2 0 216 4 4 1138 403 333 20 0 chr6 72517774 72517921 -76999116 - ID_B1 SINE B4 -68 156 7 4 1138 661 233 39 23 chr6 72517956 72518163 -76998874 - B3A SINE B2 0 216 8 4 1138 585 109 29 29 chr6 72518175 72518279 -76998758 - B1_Mur4 SINE Alu -2 148 45 4 1138 252 264 14 14 chr6 72518337 72518410 -76998627 + B4A SINE B4 79 151 -141 5 1138 622 273 0 0 chr6 72518502 72518641 -76998396 + B1F2 SINE Alu 1 139 -10 5 1138 240 170 0 0 chr6 72519037 72519090 -76997947 + (CACCC)n Simple_repeat Simple_repeat 5 57 0 5 1138 1153 61 0 0 chr6 72519563 72519701 -76997336 + B1_Mus2 SINE Alu 1 138 -9 5 1138 182 37 0 36 chr6 72519701 72519729 -76997308 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 1138 630 148 0 0 chr6 72519899 72520014 -76997023 + (CA)n Simple_repeat Simple_repeat 1 115 0 5 1138 602 230 263 4 chr6 72520164 72520442 -76996595 + MTE2b LTR MaLR 3 379 0 5 1138 505 231 0 19 chr6 72520479 72520585 -76996452 - ID_B1 SINE B4 -2 222 119 5 1138 261 381 57 68 chr6 72520659 72521042 -76995995 + L2 LINE L2 260 638 -2781 5 1138 736 258 51 5 chr6 72521042 72521256 -76995781 - ID_B1 SINE B4 0 224 1 5 1138 723 206 0 14 chr6 72521263 72521406 -76995631 - B1_Mur2 SINE Alu -8 141 1 6 1138 959 116 37 37 chr6 72521433 72521621 -76995416 + B2_Mm2 SINE B2 2 189 -6 6 1138 804 21 0 0 chr6 72521650 72521744 -76995293 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 6 1138 315 206 0 0 chr6 72521745 72521808 -76995229 - ID_B1 SINE B4 -17 207 145 6 1138 319 269 0 0 chr6 72522355 72522422 -76994615 - ID SINE ID -157 67 1 6 1138 550 269 0 15 chr6 72522521 72522657 -76994380 + B1F SINE Alu 16 149 0 6 1138 620 201 146 12 chr6 72522670 72522841 -76994196 + B3A SINE B2 1 194 -4 6 1138 778 152 236 0 chr6 72522845 72523010 -76994027 - B3 SINE B2 -10 206 3 6 1138 256 357 75 27 chr6 72523111 72523258 -76993779 + L2 LINE L2 1856 2009 -1410 5 1138 289 236 35 140 chr6 72523351 72523431 -76993606 - B1F2 SINE Alu -21 128 56 6 1138 268 250 28 0 chr6 72523431 72523503 -76993534 - tRNA-Ala-GCY_ tRNA tRNA -1 74 1 6 1138 289 236 35 140 chr6 72523503 72523565 -76993472 - B1F2 SINE Alu -94 55 1 6 1138 916 239 9 23 chr6 72523583 72523801 -76993236 - B3 SINE B2 -1 215 1 6 1138 634 214 69 0 chr6 72523861 72523992 -76993045 - B1_Mur1 SINE Alu -6 143 4 7 1138 884 290 114 27 chr6 72525095 72525428 -76991609 + MTE2b LTR MaLR 3 364 -15 7 1138 345 320 19 0 chr6 72525437 72525540 -76991497 - MIRc SINE MIR -107 161 57 7 1138 295 222 142 29 chr6 72525914 72525926 -76991111 + B1F2 SINE Alu 17 47 -101 7 1138 380 179 0 0 chr6 72525926 72525993 -76991044 + ID_B1 SINE B4 110 176 -48 7 1138 295 222 142 29 chr6 72525993 72526024 -76991013 + B1F2 SINE Alu 48 139 -9 7 1138 408 260 14 40 chr6 72526056 72526221 -76990816 + MLT1A1 LTR MaLR 246 392 -16 7 1138 308 277 83 15 chr6 72526222 72526354 -76990683 + L1MDa LINE L1 272 412 -6221 7 1138 257 209 15 0 chr6 72526354 72526421 -76990616 + CT-rich Low_complexity Low_complexity 2 69 0 7 1138 622 254 67 6 chr6 72526525 72526703 -76990334 - ID_B1 SINE B4 -29 195 7 7 1138 241 327 0 78 chr6 72526704 72526820 -76990217 - RLTR25A LTR ERVK -475 628 522 7 1138 617 208 0 8 chr6 72526740 72526861 -76990176 - B1_Mur1 SINE Alu -25 124 5 8 1138 414 0 0 0 chr6 72528318 72528364 -76988673 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1138 390 262 27 36 chr6 72528368 72528479 -76988558 - RSINE1 SINE B4 -35 130 21 8 1138 606 211 0 0 chr6 72528499 72528608 -76988429 - PB1D10 SINE Alu -7 110 2 8 1138 620 204 32 85 chr6 72528699 72528887 -76988150 - B3 SINE B2 -37 179 2 8 1138 595 278 0 14 chr6 72528919 72529065 -76987972 + B1F1 SINE Alu 5 148 -1 8 1138 477 203 108 15 chr6 72529289 72529419 -76987618 + B3 SINE B2 9 150 -66 8 1138 250 240 207 30 chr6 72529418 72529522 -76987515 - B1F SINE Alu -26 122 1 8 1138 230 279 79 34 chr6 72529522 72529557 -76987480 - ID SINE ID -137 87 49 8 1138 1326 91 16 0 chr6 72530556 72530743 -76986294 + B2_Mm1a SINE B2 1 190 -3 8 1138 586 226 37 15 chr6 72530877 72530954 -76986083 + ID SINE ID 2 81 -143 9 1138 299 204 196 39 chr6 72530954 72531056 -76985981 + PB1D9 SINE Alu 3 120 0 9 1138 336 301 185 0 chr6 72531083 72531256 -76985781 - B3 SINE B2 -11 205 1 9 1138 1151 61 0 0 chr6 72531377 72531524 -76985513 + B1_Mm SINE Alu 1 147 0 9 1138 549 199 85 35 chr6 72531569 72531710 -76985327 + B1_Mur3 SINE Alu 1 148 -1 9 1138 180 111 0 0 chr6 72531710 72531737 -76985300 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 9 1138 287 239 86 13 chr6 72531909 72532017 -76985020 - PB1D7 SINE Alu 0 120 1 9 1138 369 194 146 48 chr6 72532485 72532588 -76984449 + PB1D7 SINE Alu 1 113 -7 9 1138 512 204 35 17 chr6 72532820 72532935 -76984102 + PB1D9 SINE Alu 1 117 -3 9 1138 709 241 0 0 chr6 72533058 72533195 -76983842 - ID_B1 SINE B4 0 224 88 9 1138 297 218 71 71 chr6 72533755 72533839 -76983198 + BC1_Mm scRNA scRNA 1 84 -68 1 1138 656 240 23 34 chr6 72533841 72534018 -76983019 + B3A SINE B2 5 179 -19 1 1138 348 223 93 31 chr6 72534067 72534164 -76982873 + B1F2 SINE Alu 15 117 0 1 1138 342 0 0 0 chr6 72534509 72534547 -76982490 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1138 631 159 17 17 chr6 72534730 72534845 -76982192 + B1_Mus1 SINE Alu 34 148 0 1 1138 378 0 0 0 chr6 72534972 72535014 -76982023 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1138 214 220 0 39 chr6 72535033 72535085 -76981952 - ID4 SINE ID -29 54 5 1 1138 1082 35 43 0 chr6 72535117 72535258 -76981779 + B1_Mus1 SINE Alu 1 147 -1 1 1138 1120 189 14 0 chr6 72535284 72535496 -76981541 + B3 SINE B2 1 215 -1 1 1138 218 369 81 0 chr6 72535728 72535839 -76981198 - MIR SINE MIR -114 148 29 1 1138 358 230 11 11 chr6 72536032 72536120 -76980917 + RSINE1 SINE B4 37 124 -41 1 1138 323 96 0 19 chr6 72536138 72536191 -76980846 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1 1138 1150 228 50 29 chr6 72536635 72536915 -76980122 - B4 SINE B4 0 292 7 1 1138 342 0 0 0 chr6 72536918 72536956 -76980081 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1138 255 238 32 0 chr6 72536959 72537022 -76980015 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 1 1138 379 240 10 10 chr6 72537045 72537142 -76979895 - PB1D10 SINE Alu -19 98 2 1 1138 957 110 14 20 chr6 72537162 72537310 -76979727 - B1_Mus1 SINE Alu -1 147 1 1 1138 211 214 24 0 chr6 72538024 72538066 -76978971 + GA-rich Low_complexity Low_complexity 2 44 0 1 1138 378 0 0 0 chr6 72538094 72538136 -76978901 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1138 513 262 8 0 chr6 72538137 72538259 -76978778 - RSINE1 SINE B4 -41 124 2 1 1138 491 252 91 39 chr6 72538628 72538859 -76978178 + Lx8 LINE L1 7218 7460 -13 1 1138 1171 68 0 0 chr6 72538873 72539020 -76978017 - B1_Mm SINE Alu 0 147 1 1 1138 353 231 56 28 chr6 72539126 72539233 -76977804 + PB1D7 SINE Alu 1 110 -10 1 1138 425 114 19 19 chr6 72539233 72539340 -76977697 + (CA)n Simple_repeat Simple_repeat 1 107 0 1 1138 384 297 207 29 chr6 72539438 72539684 -76977353 - B4A SINE B4 -1 291 2 1 1138 333 0 0 0 chr6 72539719 72539756 -76977281 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1138 441 246 68 15 chr6 72539772 72539904 -76977133 - B3A SINE B2 -56 139 1 1 1138 1673 192 188 9 chr6 72539925 72540148 -76976889 + MT2A LTR ERVL 1 228 -305 1 1138 243 0 0 0 chr6 72540148 72540175 -76976862 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1138 1673 192 188 9 chr6 72540175 72540403 -76976634 + MT2A LTR ERVL 229 532 -1 1 1138 378 212 25 0 chr6 72540533 72540613 -76976424 + RMER30 DNA MER1_type 10 91 -111 1 1138 519 250 45 0 chr6 72540785 72540897 -76976140 - ID_B1 SINE B4 -8 216 100 1 1138 31 0 0 0 chr6 72541328 72541359 -76975678 + AT_rich Low_complexity Low_complexity 1 31 0 1 1138 422 216 33 0 chr6 72541831 72541939 -76975098 + PB1D10 SINE Alu 1 120 -7 1 1138 240 35 0 0 chr6 72542460 72542489 -76974548 + (CACCT)n Simple_repeat Simple_repeat 3 31 0 1 1138 676 202 78 54 chr6 72542705 72542909 -76974128 - B3 SINE B2 -7 209 1 1 1138 731 193 7 27 chr6 72542912 72543061 -76973976 - B1_Mur1 SINE Alu -3 146 1 1 1138 378 219 191 79 chr6 72543061 72543238 -76973799 - B3A SINE B2 0 198 1 1 1138 1269 243 83 31 chr6 72543675 72543785 -76973252 + MTD LTR MaLR 1 109 -310 1 1138 708 228 0 13 chr6 72543785 72543936 -76973101 - B1_Mur1 SINE Alu 0 149 1 1 1138 1269 243 83 31 chr6 72543936 72544211 -76972826 + MTD LTR MaLR 110 406 -13 1 1138 495 248 30 23 chr6 72544387 72544519 -76972518 - ID_B1 SINE B4 -3 221 89 1 1138 393 22 0 0 chr6 72545475 72545521 -76971516 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1138 417 200 0 0 chr6 72545539 72545609 -76971428 - ID4 SINE ID -9 74 5 1 1138 796 303 9 19 chr6 72545666 72545878 -76971159 - B4 SINE B4 -1 291 82 1 1138 323 244 122 94 chr6 72545872 72545911 -76971126 - B2_Mm2 SINE B2 -8 187 157 1 1138 252 77 0 0 chr6 72545911 72545950 -76971087 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1138 554 184 188 3 chr6 72545950 72546091 -76970946 - B3A SINE B2 -34 164 2 1 1138 216 97 0 0 chr6 72546092 72546123 -76970914 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1138 412 272 19 175 chr6 72546391 72546654 -76970383 + ID_B1 SINE B4 3 224 0 1 1138 609 219 15 15 chr6 72546525 72546655 -76970382 + B1F2 SINE Alu 19 148 -1 1 1138 612 199 70 49 chr6 72546659 72546802 -76970235 + RSINE1 SINE B4 3 148 -17 1 1138 189 0 0 0 chr6 72546827 72546848 -76970189 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1138 303 236 42 13 chr6 72546863 72546949 -76970088 + B4A SINE B4 1 91 -74 1 1138 312 279 55 35 chr6 72549229 72549374 -76967663 - B1F SINE Alu -1 148 1 1 1138 301 224 26 26 chr6 72549574 72549652 -76967385 - ID_B1 SINE B4 -29 195 118 1 1138 442 266 14 79 chr6 72549703 72549842 -76967195 - B1F SINE Alu -12 137 8 1 1138 26 0 0 0 chr6 72549854 72549880 -76967157 + AT_rich Low_complexity Low_complexity 1 26 0 1 1138 693 182 0 43 chr6 72549882 72550020 -76967017 - B1_Mur3 SINE Alu 0 149 18 1 1138 311 184 8 176 chr6 72549918 72550037 -76967000 - MT2B2 LTR ERVL -321 263 165 1 1138 477 196 0 89 chr6 72550061 72550184 -76966853 + PB1D9 SINE Alu 3 114 -6 1 1138 297 233 71 80 chr6 72550746 72550858 -76966179 - PB1D10 SINE Alu -5 112 2 1 1138 439 143 0 13 chr6 72551975 72552053 -76964984 - PB1D9 SINE Alu 0 120 44 1 1138 524 211 154 22 chr6 72552110 72552173 -76964864 + ID SINE ID 4 84 -140 1 1138 387 248 36 18 chr6 72552173 72552284 -76964753 + PB1D10 SINE Alu 3 115 -2 1 1138 447 285 28 42 chr6 72552366 72552509 -76964528 - B1F SINE Alu -2 147 7 1 1138 226 297 0 0 chr6 72553035 72553099 -76963938 + T-rich Low_complexity Low_complexity 5 68 0 1 1138 279 265 143 0 chr6 72553113 72553211 -76963826 - B1F2 SINE Alu -35 114 3 1 1138 247 314 105 0 chr6 72553211 72553275 -76963762 - B4 SINE B4 -205 87 15 1 1138 287 295 42 0 chr6 72553330 72553425 -76963612 - ID_B1 SINE B4 -30 194 96 1 1138 579 191 68 68 chr6 72553927 72554090 -76962947 + RSINE1 SINE B4 3 165 0 1 1138 532 295 0 8 chr6 72554502 72554632 -76962405 - ID_B1 SINE B4 -8 216 88 1 1138 351 219 12 47 chr6 72554690 72554776 -76962261 - ID SINE ID -140 84 2 1 1138 510 242 109 19 chr6 72555306 72555462 -76961575 + ID_B1 SINE B4 2 171 -53 1 1138 375 222 44 0 chr6 72555394 72555484 -76961553 + PB1D10 SINE Alu 23 116 -1 1 1138 691 207 7 43 chr6 72557896 72558037 -76959000 + B1_Mur4 SINE Alu 2 137 -13 1 1138 225 0 0 0 chr6 72558040 72558065 -76958972 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1138 764 186 27 7 chr6 72558871 72559017 -76958020 - B1_Mur2 SINE Alu 0 149 1 1 1138 180 0 0 0 chr6 72559493 72559513 -76957524 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1138 1541 43 0 0 chr6 72562244 72562432 -76954605 + B2_Mm1a SINE B2 6 193 0 1 1138 525 175 157 9 chr6 72562491 72562606 -76954431 + B1F SINE Alu 10 141 -8 1 1138 1682 26 0 15 chr6 72562739 72562935 -76954102 + B2_Mm1t SINE B2 1 193 0 1 1138 836 238 18 0 chr6 72562949 72563113 -76953924 + B3 SINE B2 3 169 -47 1 1138 287 25 25 0 chr6 72564261 72564301 -76952736 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1138 285 250 43 29 chr6 72564375 72564445 -76952592 + ID4_ SINE ID 10 80 -3 1 1138 1065 65 7 0 chr6 72564525 72564663 -76952374 + B1_Mus2 SINE Alu 9 147 0 1 1138 227 120 53 23 chr6 72567293 72567342 -76949695 - B1F2 SINE Alu -63 57 5 1 1138 703 224 121 0 chr6 72567389 72567563 -76949474 - B3A SINE B2 -2 196 2 1 1138 766 176 92 0 chr6 72567725 72567856 -76949181 - B1_Mur3 SINE Alu -1 148 6 1 1138 1209 112 26 21 chr6 72567873 72568065 -76948972 - B2_Mm2 SINE B2 -1 194 2 1 1138 901 144 14 7 chr6 72568141 72568281 -76948756 + B1_Mus2 SINE Alu 1 141 -6 1 1138 826 271 20 0 chr6 72568306 72568505 -76948532 + B3 SINE B2 5 207 -9 1 1138 562 272 7 7 chr6 72568686 72568834 -76948203 - B1F1 SINE Alu -1 148 1 1 1138 944 223 39 0 chr6 72568888 72569094 -76947943 - B3 SINE B2 -2 214 1 1 1138 266 257 14 28 chr6 72569095 72569167 -76947870 + PB1 SINE Alu 49 119 -8 1 1138 1387 223 14 28 chr6 72569255 72569545 -76947492 + MTE2b LTR MaLR 1 286 -93 1 1138 205 244 0 0 chr6 72569660 72569705 -76947332 + C-rich Low_complexity Low_complexity 5 49 0 1 1138 306 210 0 46 chr6 72569776 72569841 -76947196 + ID4_ SINE ID 12 73 -10 1 1138 261 0 0 0 chr6 72569843 72569872 -76947165 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1138 219 340 76 58 chr6 72570109 72570281 -76946756 - L2 LINE L2 -534 2885 2711 1 1138 201 132 0 0 chr6 72570601 72570639 -76946398 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1138 1065 63 7 0 chr6 72570639 72570781 -76946256 - B1_Mus1 SINE Alu 0 148 6 1 1138 463 127 0 0 chr6 72570818 72570897 -76946140 - L1Md_F2 LINE L1 0 6582 6504 1 1138 437 192 0 0 chr6 72571193 72571271 -76945766 - PB1 SINE Alu -27 100 23 1 1138 387 0 0 0 chr6 72571467 72571510 -76945527 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1138 823 271 66 107 chr6 72571510 72571782 -76945255 - B4 SINE B4 -23 269 9 2 1138 779 245 75 0 chr6 72571802 72571990 -76945047 - B3 SINE B2 -10 206 5 2 1138 261 231 92 0 chr6 72571996 72572061 -76944976 - PB1D10 SINE Alu -6 111 41 2 1138 316 317 39 0 chr6 72572263 72572367 -76944670 + L1M4 LINE L1 4762 4869 -1277 2 1138 1184 35 14 0 chr6 72572568 72572710 -76944327 + B1_Mus2 SINE Alu 1 144 -3 2 1138 253 136 68 0 chr6 72572855 72572914 -76944123 + C-rich Low_complexity Low_complexity 3 65 0 2 1138 355 236 119 19 chr6 72573219 72573379 -76943658 + L1M4 LINE L1 5541 5716 -464 2 1138 213 154 26 0 chr6 72573384 72573423 -76943614 - B3 SINE B2 -133 83 44 2 1138 236 54 0 139 chr6 72573391 72573434 -76943603 - B4 SINE B4 -217 75 39 2 1138 212 306 101 129 chr6 72573496 72573514 -76943523 + B3A SINE B2 7 52 -146 2 1138 266 345 11 22 chr6 72573514 72573603 -76943434 + ID_B1 SINE B4 23 110 -114 2 1138 212 306 101 129 chr6 72573603 72573635 -76943402 + B3A SINE B2 53 141 -57 2 1138 302 250 25 16 chr6 72573614 72573707 -76943330 - B1_Mus1 SINE Alu -16 101 13 2 1138 180 0 0 0 chr6 72573708 72573728 -76943309 + (CCTTG)n Simple_repeat Simple_repeat 5 24 0 2 1138 756 190 128 0 chr6 72573733 72573928 -76943109 - ID_B1 SINE B4 -1 223 4 2 1138 194 0 39 0 chr6 72573934 72573960 -76943077 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1138 1081 87 0 0 chr6 72573960 72574098 -76942939 - B1_Mus2 SINE Alu -9 138 1 2 1138 380 246 96 9 chr6 72574111 72574226 -76942811 + MER54A LTR ERVL 72 196 -705 2 1138 273 89 0 0 chr6 72574338 72574383 -76942654 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1138 639 194 65 0 chr6 72574401 72574525 -76942512 + B1_Mur1 SINE Alu 17 148 -1 2 1138 505 277 84 78 chr6 72574583 72574791 -76942246 - B4A SINE B4 -6 286 77 2 1138 396 0 0 0 chr6 72574806 72574850 -76942187 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 2 1138 1152 92 0 24 chr6 72574856 72575023 -76942014 - B2_Mm2 SINE B2 -30 165 3 2 1138 383 258 32 11 chr6 72575026 72575120 -76941917 - B3A SINE B2 -101 97 2 2 1138 874 246 32 14 chr6 72575196 72575414 -76941623 - ID_B1 SINE B4 0 224 3 2 1138 1113 86 0 0 chr6 72575430 72575570 -76941467 + B1_Mus2 SINE Alu 1 140 -7 2 1138 521 254 146 12 chr6 72575992 72576129 -76940908 + B3 SINE B2 23 178 -38 2 1138 345 93 0 0 chr6 72576129 72576183 -76940854 + (CATA)n Simple_repeat Simple_repeat 4 57 0 2 1138 521 254 146 12 chr6 72576183 72576216 -76940821 + B3 SINE B2 179 215 -1 2 1138 219 152 0 0 chr6 72577117 72577163 -76939874 + T-rich Low_complexity Low_complexity 1 46 0 2 1138 935 107 0 28 chr6 72577816 72577960 -76939077 - B2_Mm2 SINE B2 -52 143 4 2 1138 430 284 56 84 chr6 72577960 72578172 -76938865 + MER2 DNA MER2_type 140 345 0 2 1138 210 118 0 0 chr6 72578197 72578231 -76938806 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2 1138 1260 48 0 0 chr6 72578242 72578410 -76938627 + (TG)n Simple_repeat Simple_repeat 2 169 0 2 1138 545 251 304 6 chr6 72578466 72578624 -76938413 - B3 SINE B2 -11 205 1 2 1138 280 275 99 0 chr6 72578699 72578790 -76938247 - B4A SINE B4 -191 101 2 2 1138 416 202 0 56 chr6 72578845 72578934 -76938103 - ID SINE ID -136 88 5 2 1138 1133 246 144 3 chr6 72579218 72579516 -76937521 + MTEb LTR MaLR 37 376 -3 2 1138 301 333 11 11 chr6 72579519 72579613 -76937424 - MamRep137 DNA TcMar? -315 129 36 2 1138 381 102 0 0 chr6 72580324 72580383 -76936654 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1138 914 250 82 28 chr6 72580412 72580667 -76936370 - B4 SINE B4 -21 271 3 2 1138 238 231 39 0 chr6 72580745 72580797 -76936240 + GA-rich Low_complexity Low_complexity 4 57 0 2 1138 180 0 0 0 chr6 72580970 72580990 -76936047 + (CACG)n Simple_repeat Simple_repeat 4 23 0 2 1138 291 237 13 26 chr6 72581483 72581561 -76935476 + G-rich Low_complexity Low_complexity 1 77 0 2 1138 189 0 0 0 chr6 72582487 72582508 -76934529 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1138 1186 62 14 0 chr6 72582603 72582749 -76934288 + B1_Mus1 SINE Alu 1 148 0 2 1138 379 49 379 19 chr6 72584795 72584898 -76932139 - B2_Mm2 SINE B2 -9 186 47 2 1138 1031 90 14 0 chr6 72584965 72585110 -76931927 - B2_Mm1t SINE B2 -39 154 8 2 1138 875 129 57 7 chr6 72585137 72585277 -76931760 - B1_Mus2 SINE Alu 0 147 1 2 1138 255 333 13 0 chr6 72585725 72585800 -76931237 - PB1D10 SINE Alu -1 116 41 2 1138 648 268 124 35 chr6 72585864 72586065 -76930972 + ID_B1 SINE B4 3 221 -3 2 1138 231 292 119 28 chr6 72586573 72586682 -76930355 - B4A SINE B4 -6 286 168 2 1138 850 141 86 29 chr6 72587029 72587204 -76929833 - B2_Mm2 SINE B2 -4 191 7 2 1138 765 200 0 0 chr6 72587959 72588094 -76928943 - B1_Mus1 SINE Alu -2 146 12 2 1138 722 245 0 59 chr6 72588136 72588305 -76928732 - RSINE1 SINE B4 0 165 7 2 1138 218 125 50 0 chr6 72588542 72588582 -76928455 + CT-rich Low_complexity Low_complexity 1 42 0 2 1138 248 234 14 84 chr6 72588589 72588681 -76928356 - B1_Mur3 SINE Alu -33 87 1 2 1138 246 268 13 78 chr6 72588609 72588686 -76928351 - B4 SINE B4 -140 152 81 2 1138 719 208 83 88 chr6 72588703 72588919 -76928118 - B3 SINE B2 0 216 2 2 1138 464 258 40 16 chr6 72589186 72589312 -76927725 + RSINE1 SINE B4 2 130 -35 2 1138 1063 93 0 41 chr6 72589350 72589496 -76927541 + B1_Mus2 SINE Alu 2 141 -6 2 1138 373 278 113 0 chr6 72589779 72589876 -76927161 + RSINE1 SINE B4 4 111 -54 2 1138 414 0 0 0 chr6 72589876 72589922 -76927115 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1138 1146 78 7 0 chr6 72589959 72590100 -76926937 + B1_Mus1 SINE Alu 3 144 -4 2 1138 1112 83 0 27 chr6 72590121 72590261 -76926776 + B1_Mus1 SINE Alu 2 138 -10 2 1138 291 28 0 0 chr6 72590261 72590297 -76926740 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1138 232 69 0 0 chr6 72590959 72590988 -76926049 + PB1D7 SINE Alu 84 112 -8 2 1138 546 269 9 0 chr6 72591025 72591133 -76925904 - RSINE1 SINE B4 -24 141 33 2 1138 869 179 141 5 chr6 72591292 72591483 -76925554 + URR1B DNA MER1_type 7 223 -2 2 1138 231 314 87 41 chr6 72591530 72591726 -76925311 + L1MC4 LINE L1 7224 7428 -614 2 1138 547 294 49 5 chr6 72591738 72591923 -76925114 + ID_B1 SINE B4 32 224 0 2 1138 437 227 0 105 chr6 72592255 72592388 -76924649 - B4A SINE B4 -173 119 1 2 1138 582 86 0 0 chr6 72592411 72592492 -76924545 + (TTCC)n Simple_repeat Simple_repeat 3 83 0 2 1138 598 288 13 38 chr6 72592927 72593086 -76923951 - ID_B1 SINE B4 -13 211 57 2 1138 441 196 202 18 chr6 72593432 72593546 -76923491 - RSINE1 SINE B4 -12 153 19 2 1138 268 267 20 100 chr6 72593513 72593613 -76923424 + ID_B1 SINE B4 18 109 -115 2 1138 417 66 0 0 chr6 72593613 72593674 -76923363 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 2 1138 472 220 64 0 chr6 72593794 72593903 -76923134 - PB1D10 SINE Alu -1 116 1 2 1138 577 176 78 0 chr6 72594209 72594311 -76922726 + B3 SINE B2 1 110 -106 2 1138 1310 148 20 0 chr6 72594319 72594522 -76922515 - URR1B DNA MER1_type -2 223 17 2 1138 486 186 78 0 chr6 72594516 72594618 -76922419 + B3 SINE B2 101 210 -6 2 1138 1140 124 0 0 chr6 72594921 72595099 -76921938 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 2 1138 294 29 0 0 chr6 72595099 72595134 -76921903 + (GAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1138 439 208 29 19 chr6 72595282 72595385 -76921652 + MER5B DNA MER1_type 2 105 -73 2 1138 619 307 39 15 chr6 72595592 72595797 -76921240 - MIR SINE MIR -6 256 47 2 1138 198 0 0 0 chr6 72595918 72595940 -76921097 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 2 1138 1258 29 0 0 chr6 72595943 72596083 -76920954 - B1_Mus1 SINE Alu -7 141 2 2 1138 1409 66 22 6 chr6 72596137 72596319 -76920718 - B2_Mm2 SINE B2 -9 186 2 2 1138 601 183 0 37 chr6 72596324 72596432 -76920605 - B1_Mur1 SINE Alu -2 147 44 2 1138 576 171 0 0 chr6 72596456 72596567 -76920470 + (TA)n Simple_repeat Simple_repeat 2 112 0 2 1138 327 49 0 0 chr6 72596576 72596617 -76920420 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1138 535 280 45 0 chr6 72596618 72596750 -76920287 - RSINE1 SINE B4 -24 141 4 2 1138 1793 189 51 14 chr6 72598672 72599027 -76918010 + MTEb LTR MaLR 1 368 -11 2 1138 718 298 24 19 chr6 72599675 72599884 -76917153 + ID_B1 SINE B4 2 211 -13 2 1138 306 0 0 0 chr6 72599886 72599920 -76917117 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1138 599 269 14 14 chr6 72599975 72600122 -76916915 - B1F1 SINE Alu -1 148 2 2 1138 318 335 108 19 chr6 72600406 72600564 -76916473 + MIRb SINE MIR 91 262 -6 2 1138 727 270 52 38 chr6 72600868 72601080 -76915957 + ID_B1 SINE B4 9 223 -1 2 1138 235 165 23 81 chr6 72601455 72601502 -76915535 + A-rich Low_complexity Low_complexity 2 42 0 2 1138 1153 62 0 20 chr6 72601502 72601650 -76915387 + B1_Mm SINE Alu 3 147 0 2 1138 235 165 23 81 chr6 72601650 72601688 -76915349 + A-rich Low_complexity Low_complexity 43 82 0 2 1138 807 131 57 21 chr6 72601691 72601822 -76915215 + B1_Mur4 SINE Alu 5 140 -10 2 1138 320 0 25 0 chr6 72601822 72601862 -76915175 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 1138 247 279 66 0 chr6 72602126 72602187 -76914850 - MER20 DNA MER1_type -98 121 57 2 1138 605 266 24 37 chr6 72602194 72602358 -76914679 + B3A SINE B2 2 163 -35 3 1138 312 27 0 0 chr6 72602760 72602797 -76914240 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1138 1074 84 0 27 chr6 72602797 72602943 -76914094 - B1_Mus2 SINE Alu -4 143 2 3 1138 233 270 133 11 chr6 72602997 72603087 -76913950 - PB1D9 SINE Alu -10 110 10 3 1138 518 283 22 31 chr6 72603025 72603184 -76913853 - B4A SINE B4 -69 155 1 3 1138 539 245 52 52 chr6 72603422 72603616 -76913421 - B3A SINE B2 0 198 5 3 1138 725 197 7 49 chr6 72604181 72604325 -76912712 + RSINE1 SINE B4 2 139 -26 3 1138 289 299 57 49 chr6 72604455 72604578 -76912459 - B4A SINE B4 -84 208 85 3 1138 335 275 124 21 chr6 72604605 72604750 -76912287 - RSINE1 SINE B4 -4 161 2 3 1138 432 200 11 43 chr6 72604766 72604860 -76912177 - B4A SINE B4 -200 92 2 3 1138 201 108 0 0 chr6 72604948 72604985 -76912052 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1138 384 250 0 57 chr6 72606138 72606244 -76910793 - PB1D7 SINE Alu -19 101 2 3 1138 544 289 89 11 chr6 72606264 72606533 -76910504 - B4 SINE B4 0 292 3 3 1138 457 248 56 40 chr6 72606566 72606692 -76910345 + RSINE1 SINE B4 2 129 -36 3 1138 663 273 77 70 chr6 72607115 72607414 -76909623 - ORR1E LTR MaLR -58 301 1 3 1138 247 231 34 3 chr6 72607752 72607817 -76909220 + PB1D7 SINE Alu 1 70 -47 3 1138 210 240 139 51 chr6 72607757 72607836 -76909201 + ID_B1 SINE B4 87 172 -52 3 1138 605 234 94 0 chr6 72607914 72608085 -76908952 + B3A SINE B2 1 187 -11 3 1138 694 157 162 6 chr6 72608106 72608273 -76908764 + B2_Mm2 SINE B2 3 195 0 3 1138 560 252 35 9 chr6 72608675 72608848 -76908189 + B3A SINE B2 1 184 -32 3 1138 363 23 0 0 chr6 72608848 72608892 -76908145 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1138 530 207 38 82 chr6 72608976 72609134 -76907903 + ID_B1 SINE B4 68 218 -6 3 1138 885 113 30 8 chr6 72609004 72609138 -76907899 + B1_Mus1 SINE Alu 10 146 -2 3 1138 507 269 35 9 chr6 72609695 72609811 -76907226 + RSINE1 SINE B4 9 127 -38 3 1138 328 259 62 0 chr6 72609880 72609961 -76907076 + PB1 SINE Alu 30 115 -12 3 1138 470 245 106 14 chr6 72610142 72610283 -76906754 - MER63A DNA AcHobo -56 154 1 3 1138 854 167 7 40 chr6 72611457 72611607 -76905430 - B1_Mur4 SINE Alu -1 149 5 3 1138 368 278 117 34 chr6 72611875 72612054 -76904983 - B3 SINE B2 0 216 23 3 1138 371 21 21 0 chr6 72612062 72612110 -76904927 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1138 551 246 103 55 chr6 72612139 72612285 -76904752 - ID_B1 SINE B4 -67 157 5 3 1138 238 364 60 8 chr6 72612736 72612869 -76904168 - MER117 DNA MER1_type -37 160 21 3 1138 396 0 0 0 chr6 72613814 72613858 -76903179 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 142 381 233 58 58 chr6 72613864 72614001 -76903036 - B1F SINE Alu -12 137 1 3 1139 217 362 80 80 chr6 72614604 72614684 -76902353 + B4A SINE B4 20 187 -105 3 1139 481 267 28 19 chr6 72614684 72614791 -76902246 + B1_Mur1 SINE Alu 3 110 -39 3 1139 217 362 80 80 chr6 72614791 72614805 -76902232 + B4A SINE B4 188 220 -72 3 1139 256 299 97 52 chr6 72614851 72614928 -76902109 + B1F SINE Alu 1 83 -66 3 1139 220 226 138 46 chr6 72614928 72614993 -76902044 + ID4_ SINE ID 2 72 -11 3 1139 477 233 58 58 chr6 72615251 72615406 -76901631 + MER2 DNA MER2_type 153 307 -38 3 1139 558 268 15 55 chr6 72615407 72615608 -76901429 - B4A SINE B4 -94 198 6 3 1139 350 313 9 57 chr6 72615612 72615717 -76901320 + MER2 DNA MER2_type 246 345 0 3 1139 449 257 20 93 chr6 72615872 72615902 -76901135 + MT2B LTR ERVL 140 158 -443 3 1139 908 147 28 0 chr6 72615902 72616045 -76900992 + B1_Mus1 SINE Alu 2 148 0 3 1139 320 278 17 61 chr6 72615942 72616057 -76900980 + RLTR25B LTR ERVK 442 551 -477 3 1139 768 264 11 11 chr6 72616071 72616251 -76900786 + B3 SINE B2 30 209 -7 3 1139 297 0 0 0 chr6 72616251 72616284 -76900753 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1139 1582 57 0 0 chr6 72616290 72616482 -76900555 + B2_Mm1a SINE B2 1 192 -1 3 1139 569 62 25 0 chr6 72616483 72616564 -76900473 + (GAAA)n Simple_repeat Simple_repeat 3 85 0 3 1139 395 248 166 28 chr6 72617416 72617561 -76899476 + L1M5 LINE L1 5518 5682 -442 3 1139 230 338 64 35 chr6 72617846 72617987 -76899050 + MER5B DNA MER1_type 24 168 -10 3 1139 231 371 48 16 chr6 72617847 72617973 -76899064 - MER5A DNA MER1_type -24 165 36 3 1139 360 253 108 0 chr6 72619114 72619197 -76897840 + RSINE1 SINE B4 64 155 -10 3 1139 24 67 0 0 chr6 72619200 72619245 -76897792 + AT_rich Low_complexity Low_complexity 1 45 0 3 1139 380 258 254 65 chr6 72619670 72619907 -76897130 + RMER15 LTR ERVL 280 561 -14 3 1139 297 0 0 0 chr6 72620642 72620675 -76896362 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1139 664 207 11 22 chr6 72621493 72621645 -76895392 - B1_Mm SINE Alu -1 148 5 3 1139 635 169 67 8 chr6 72622218 72622337 -76894700 - B1_Mur1 SINE Alu -3 146 21 3 1139 619 146 136 0 chr6 72622416 72622519 -76894518 + B3 SINE B2 2 118 -98 3 1139 342 255 34 88 chr6 72622616 72622770 -76894267 - B4A SINE B4 -64 228 82 3 1139 197 302 82 21 chr6 72623823 72623941 -76893096 - L2b LINE L2 -6 3420 3289 3 1139 1148 232 10 105 chr6 72624100 72624309 -76892728 - B4 SINE B4 -15 277 81 3 1139 1205 44 0 0 chr6 72624309 72624446 -76892591 + B1_Mus2 SINE Alu 2 138 -9 3 1139 351 0 0 0 chr6 72624446 72624485 -76892552 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1139 333 68 0 0 chr6 72624488 72624532 -76892505 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 3 1139 1148 232 10 105 chr6 72624532 72624621 -76892416 - B4 SINE B4 -212 80 4 3 1139 229 234 0 0 chr6 72624795 72624842 -76892195 - Zaphod DNA Tip100 -59 3972 3926 3 1139 486 0 0 0 chr6 72625098 72625152 -76891885 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1139 194 294 26 121 chr6 72625336 72625388 -76891649 - MIR SINE MIR -105 157 110 3 1139 1678 21 5 0 chr6 72625388 72625579 -76891458 - B2_Mm1t SINE B2 0 193 2 3 1139 194 294 26 121 chr6 72625579 72625642 -76891395 - MIR SINE MIR -153 109 53 3 1139 531 0 0 0 chr6 72626257 72626316 -76890721 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1139 815 238 11 31 chr6 72626400 72626591 -76890446 - B3 SINE B2 -29 187 1 3 1139 560 204 8 42 chr6 72626592 72626710 -76890327 - B4 SINE B4 -77 215 102 3 1139 281 311 107 119 chr6 72626723 72626975 -76890062 - B4 SINE B4 -41 251 3 3 1139 685 148 0 111 chr6 72629200 72629344 -76887693 + B1_Mur1 SINE Alu 22 149 0 3 1139 229 169 16 48 chr6 72629344 72629406 -76887631 + A-rich Low_complexity Low_complexity 1 60 0 3 1139 420 261 118 0 chr6 72630011 72630130 -76886907 + RSINE1 SINE B4 5 137 -28 3 1139 432 262 61 38 chr6 72630180 72630311 -76886726 + ID_B1 SINE B4 2 135 -89 3 1139 414 0 0 0 chr6 72630335 72630381 -76886656 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 3 1139 441 297 34 0 chr6 72633125 72633243 -76883794 + MER63B DNA AcHobo 269 390 -46 3 1139 784 241 35 23 chr6 72633393 72633567 -76883470 - B3A SINE B2 -22 176 1 3 1139 1337 85 17 0 chr6 72633600 72633777 -76883260 + B2_Mm2 SINE B2 2 181 -14 3 1139 324 111 0 0 chr6 72633948 72634002 -76883035 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1139 412 219 111 26 chr6 72634229 72634346 -76882691 + ID_B1 SINE B4 74 200 -24 3 1139 754 97 0 0 chr6 72634249 72634352 -76882685 + B1_Mur4 SINE Alu 27 129 -21 3 1139 330 302 117 6 chr6 72634784 72634947 -76882090 + B4A SINE B4 108 288 -4 3 1139 183 233 23 0 chr6 72635180 72635223 -76881814 - MIRm SINE MIR -4 272 229 3 1139 576 0 0 0 chr6 72635540 72635604 -76881433 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1139 747 210 118 18 chr6 72635838 72636008 -76881029 + B3 SINE B2 20 206 -10 3 1139 405 39 0 0 chr6 72636010 72636061 -76880976 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 3 1139 447 208 175 8 chr6 72636345 72636471 -76880566 - B1_Mur2 SINE Alu 0 149 3 3 1139 493 229 37 0 chr6 72636471 72636580 -76880457 - PB1D10 SINE Alu -1 116 4 3 1139 433 236 25 49 chr6 72636645 72636774 -76880263 - RSINE1 SINE B4 0 292 90 3 1139 464 240 47 19 chr6 72637491 72637597 -76879440 + PB1D10 SINE Alu 9 117 0 3 1139 411 294 46 0 chr6 72637606 72637715 -76879322 + PB1D9 SINE Alu 7 120 0 3 1139 787 206 104 21 chr6 72637719 72637912 -76879125 + B3 SINE B2 2 210 -6 3 1139 758 266 160 37 chr6 72638416 72638756 -76878281 - MTD LTR MaLR -31 388 20 3 1139 514 0 30 0 chr6 72639408 72639474 -76877563 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1139 752 174 22 15 chr6 72639551 72639685 -76877352 - B1_Mur1 SINE Alu -2 147 13 3 1139 338 284 71 107 chr6 72639685 72639747 -76877290 - B4 SINE B4 -68 223 35 3 1139 240 35 0 0 chr6 72639804 72639833 -76877204 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1139 302 318 190 36 chr6 72640743 72641332 -76875705 + L2a LINE L2 2462 3141 -285 3 1139 369 109 0 0 chr6 72641472 72641527 -76875510 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1139 313 313 0 29 chr6 72642194 72642296 -76874741 - BC1_Mm scRNA scRNA -52 100 2 3 1139 467 268 0 31 chr6 72642325 72642453 -76874584 - B1F2 SINE Alu -1 119 1 3 1139 487 271 138 52 chr6 72643181 72643450 -76873587 - B4A SINE B4 0 292 1 3 1139 250 351 26 51 chr6 72645163 72645280 -76871757 + B4A SINE B4 7 120 -172 4 1139 257 241 0 92 chr6 72645431 72645462 -76871575 - ID_B1 SINE B4 -116 108 30 4 1139 270 236 0 18 chr6 72645462 72645518 -76871519 - ID4_ SINE ID 0 83 29 4 1139 1204 233 57 32 chr6 72645563 72645929 -76871108 - MTD LTR MaLR -55 366 5 4 1139 543 31 0 0 chr6 72646540 72646605 -76870432 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1139 439 358 98 0 chr6 72647983 72648187 -76868850 - ID_B1 SINE B4 0 224 1 4 1139 2960 57 0 11 chr6 72648307 72648682 -76868355 + L1Md_A LINE L1 6212 6582 0 4 1139 407 208 80 62 chr6 72648694 72648807 -76868230 + PB1D10 SINE Alu 2 116 -1 4 1139 240 209 0 0 chr6 72649277 72649320 -76867717 - LTR41B LTR ERVL -586 172 130 4 1139 508 198 22 134 chr6 72650043 72650177 -76866860 - PB1 SINE Alu -3 124 6 4 1139 21 0 0 0 chr6 72650193 72650214 -76866823 + AT_rich Low_complexity Low_complexity 1 21 0 4 1139 696 264 38 6 chr6 72650260 72650420 -76866617 + ID_B1 SINE B4 57 221 -3 4 1139 598 280 118 134 chr6 72650420 72650625 -76866412 - MTD LTR MaLR -5 374 151 4 1139 231 36 0 0 chr6 72650625 72650653 -76866384 + (CTTG)n Simple_repeat Simple_repeat 1 28 0 4 1139 598 302 169 52 chr6 72650653 72650827 -76866210 - MTD LTR MaLR -239 180 1 4 1139 779 138 0 161 chr6 72650858 72651013 -76866024 + B1_Mur4 SINE Alu 6 135 -15 4 1139 723 151 8 25 chr6 72651398 72651520 -76865517 + PB1D9 SINE Alu 1 120 0 4 1139 234 0 0 0 chr6 72651523 72651549 -76865488 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 4 1139 501 277 71 80 chr6 72651691 72651757 -76865280 - B4 SINE B4 0 292 230 4 1139 1471 75 5 0 chr6 72651757 72651943 -76865094 - B2_Mm1a SINE B2 -6 187 1 4 1139 501 288 69 71 chr6 72651943 72652116 -76864921 - B4 SINE B4 -63 229 49 4 1139 429 241 132 18 chr6 72652514 72652628 -76864409 + RSINE1 SINE B4 3 129 -36 4 1139 1886 188 38 72 chr6 72653031 72653450 -76863587 - MTD LTR MaLR -1 418 14 4 1139 318 281 104 24 chr6 72653410 72653574 -76863463 + ORR1B1-int LTR MaLR 578 754 -755 4 1139 1057 75 0 0 chr6 72653480 72653613 -76863424 + B1_Mus1 SINE Alu 15 147 -1 4 1139 180 70 0 65 chr6 72653617 72653663 -76863374 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 4 1139 303 347 107 8 chr6 72653687 72653809 -76863228 + RSINE1 SINE B4 21 154 -11 4 1139 1081 30 0 8 chr6 72653801 72653935 -76863102 + B1_Mm SINE Alu 15 147 0 4 1139 208 75 88 15 chr6 72653942 72654010 -76863027 + A-rich Low_complexity Low_complexity 3 75 0 4 1139 192 320 0 0 chr6 72654541 72654591 -76862446 + L3 LINE CR1 4348 4397 -92 4 1139 186 71 0 0 chr6 72655084 72655112 -76861925 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1139 466 300 101 31 chr6 72655378 72655636 -76861401 + B4 SINE B4 1 276 -16 4 1139 476 226 0 11 chr6 72655794 72655888 -76861149 - PB1D10 SINE Alu -7 110 18 4 1139 237 347 0 48 chr6 72656012 72656115 -76860922 - RSINE1 SINE B4 -24 141 44 4 1139 369 0 0 0 chr6 72656160 72656201 -76860836 + (ATTG)n Simple_repeat Simple_repeat 2 42 0 4 1139 245 306 14 0 chr6 72656203 72656301 -76860736 + (CA)n Simple_repeat Simple_repeat 1 99 0 4 1139 393 22 0 0 chr6 72656403 72656449 -76860588 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 4 1139 232 234 188 0 chr6 72656813 72656877 -76860160 - ID4_ SINE ID -3 80 5 4 1139 876 162 0 7 chr6 72657133 72657270 -76859767 + B1_Mur4 SINE Alu 4 139 -11 4 1139 672 13 0 0 chr6 72657270 72657347 -76859690 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 4 1139 226 119 49 33 chr6 72657357 72657418 -76859619 + A-rich Low_complexity Low_complexity 4 65 0 4 1139 441 0 0 0 chr6 72657489 72657538 -76859499 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1139 231 308 31 0 chr6 72658168 72658233 -76858804 - ID4_ SINE ID -15 68 2 4 1139 699 292 49 25 chr6 72658324 72658608 -76858429 - B4A SINE B4 0 292 2 4 1139 661 197 38 8 chr6 72658659 72658792 -76858245 - B1_Mur3 SINE Alu -11 138 2 4 1139 21 57 0 0 chr6 72658794 72658829 -76858208 + AT_rich Low_complexity Low_complexity 1 35 0 4 1139 832 278 54 21 chr6 72658831 72659070 -76857967 + B4 SINE B4 21 267 -25 4 1139 357 24 0 0 chr6 72659071 72659113 -76857924 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1139 246 62 0 0 chr6 72659649 72659681 -76857356 + (CAT)n Simple_repeat Simple_repeat 3 34 0 4 1139 231 233 135 14 chr6 72659692 72659766 -76857271 - BC1_Mm scRNA scRNA -69 83 1 4 1139 1219 112 0 0 chr6 72659930 72660099 -76856938 - B2_Mm2 SINE B2 -26 169 1 4 1139 1092 181 60 0 chr6 72660330 72660529 -76856508 - B3 SINE B2 -4 212 2 4 1139 1086 216 28 16 chr6 72662282 72662531 -76854506 + B4A SINE B4 41 292 0 4 1139 182 327 114 9 chr6 72662553 72662658 -76854379 - MIR3 SINE MIR -50 158 43 4 1139 315 255 0 60 chr6 72662864 72662976 -76854061 - RSINE1 SINE B4 -1 164 5 4 1139 421 297 54 94 chr6 72663177 72663400 -76853637 + B4 SINE B4 2 215 -77 4 1139 490 158 13 0 chr6 72663491 72663567 -76853470 - B1_Mur3 SINE Alu -71 78 2 4 1139 431 285 14 97 chr6 72663567 72663632 -76853405 - ID_B1 SINE B4 -65 156 28 4 1139 302 308 9 61 chr6 72663635 72663749 -76853288 - ID_B1 SINE B4 -26 198 91 4 1139 307 270 11 0 chr6 72663759 72663848 -76853189 - L1ME3 LINE L1 -32 6130 6041 4 1139 575 305 20 0 chr6 72663851 72664002 -76853035 + B3A SINE B2 2 155 -43 4 1139 180 0 0 0 chr6 72664501 72664521 -76852516 + (GGA)n Simple_repeat Simple_repeat 1 20 0 4 1139 387 174 29 115 chr6 72665325 72665429 -76851608 + B4A SINE B4 198 292 0 4 1139 205 184 26 0 chr6 72665442 72665480 -76851557 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1139 231 311 66 11 chr6 72665538 72665629 -76851408 + MurSatRep1 Unknown Unknown 219 314 -1823 4 1139 1681 31 0 0 chr6 72665668 72665861 -76851176 + B2_Mm1a SINE B2 1 193 0 4 1139 204 40 0 0 chr6 72665960 72665985 -76851052 + (TGG)n Simple_repeat Simple_repeat 3 27 0 4 1139 571 311 131 8 chr6 72666304 72666563 -76850474 - B4A SINE B4 0 292 2 4 1139 768 147 130 15 chr6 72666869 72667000 -76850037 - B1_Mus2 SINE Alu 0 147 2 4 1139 23 0 0 0 chr6 72667019 72667042 -76849995 + AT_rich Low_complexity Low_complexity 1 23 0 4 1139 1118 280 34 65 chr6 72667107 72667311 -76849726 + MTE2a LTR MaLR 39 232 -147 4 1139 615 282 5 46 chr6 72667311 72667508 -76849529 - B3A SINE B2 -7 191 3 4 1139 1118 280 34 65 chr6 72667508 72667655 -76849382 + MTE2a LTR MaLR 233 379 0 4 1139 227 326 38 15 chr6 72668343 72668474 -76848563 + L2a LINE L2 3107 3240 -186 4 1139 260 271 68 41 chr6 72668637 72668709 -76848328 + L1MB7 LINE L1 5133 5206 -940 4 1139 243 0 0 0 chr6 72668709 72668736 -76848301 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 4 1139 260 271 68 41 chr6 72668736 72668809 -76848228 + L1MB7 LINE L1 5207 5282 -864 4 1139 1129 187 32 5 chr6 72668833 72669053 -76847984 + URR1A DNA MER1_type 1 226 0 4 1139 432 358 7 7 chr6 72669053 72669202 -76847835 + RSINE1 SINE B4 17 165 0 4 1139 237 345 18 9 chr6 72669344 72669455 -76847582 + L1MB7 LINE L1 5450 5561 -617 4 1139 546 322 70 5 chr6 72669458 72669658 -76847379 + B4 SINE B4 2 214 -78 4 1139 368 222 62 0 chr6 72669662 72669743 -76847294 - B1_Mur2 SINE Alu -56 93 8 4 1139 347 221 126 63 chr6 72669697 72669808 -76847229 + B4 SINE B4 157 274 -18 4 1139 1379 247 106 22 chr6 72669829 72670293 -76846744 + L1MB7 LINE L1 5666 6168 -16 4 1139 438 305 42 18 chr6 72670409 72670576 -76846461 - MER5B DNA MER1_type -5 173 3 4 1139 2582 150 0 35 chr6 72670817 72671245 -76845792 - MTC LTR MaLR -8 413 1 4 1139 491 239 162 0 chr6 72671338 72671455 -76845582 - B1_Mur2 SINE Alu -13 136 1 4 1139 428 234 32 11 chr6 72671457 72671552 -76845485 - PB1D10 SINE Alu 0 117 21 4 1139 1053 70 34 34 chr6 72672552 72672700 -76844337 + B1_Mus1 SINE Alu 1 148 0 4 1139 236 330 11 11 chr6 72672798 72672887 -76844150 - Charlie14a DNA MER1_type -416 748 660 4 1139 391 280 81 34 chr6 72672905 72673053 -76843984 - MER106A DNA MER1_type -2 234 80 4 1139 687 269 22 80 chr6 72673174 72673400 -76843637 + ID_B1 SINE B4 1 213 -11 4 1139 289 210 0 31 chr6 72673528 72673592 -76843445 - ID4_ SINE ID -21 62 1 4 1139 270 259 0 0 chr6 72674799 72674857 -76842180 - MER5B DNA MER1_type -16 162 105 4 1139 528 261 96 27 chr6 72675247 72675393 -76841644 + B3 SINE B2 6 161 -55 4 1139 238 283 26 62 chr6 72675480 72675593 -76841444 + B4A SINE B4 161 269 -23 4 1139 189 0 0 0 chr6 72675608 72675629 -76841408 + (CAAG)n Simple_repeat Simple_repeat 1 21 0 4 1139 288 0 0 0 chr6 72675634 72675666 -76841371 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1139 1034 92 0 0 chr6 72675958 72676089 -76840948 + B1_Mus1 SINE Alu 5 135 -13 4 1139 783 0 0 0 chr6 72676089 72676176 -76840861 + (GGAGA)n Simple_repeat Simple_repeat 1 87 0 4 1139 329 247 0 79 chr6 72676177 72676278 -76840759 - B1_Mur2 SINE Alu -54 95 3 4 1139 339 25 0 0 chr6 72676697 72676737 -76840300 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1139 462 79 0 0 chr6 72676837 72676900 -76840137 + (TCC)n Simple_repeat Simple_repeat 3 65 0 4 1139 1106 101 0 152 chr6 72676951 72677162 -76839875 + B2_Mm2 SINE B2 1 179 -16 4 1139 789 11 0 0 chr6 72677162 72677252 -76839785 + (GAAA)n Simple_repeat Simple_repeat 4 93 0 4 1139 947 178 7 0 chr6 72677274 72677420 -76839617 - B1_Mus1 SINE Alu -1 147 1 4 1139 613 247 122 46 chr6 72677420 72677747 -76839290 - L1MC4 LINE L1 -8 8034 7683 5 1139 185 0 40 0 chr6 72677768 72677793 -76839244 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1139 395 19 19 0 chr6 72679049 72679101 -76837936 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1139 233 184 94 106 chr6 72679112 72679197 -76837840 - RSINE1 SINE B4 0 165 82 5 1139 432 298 63 7 chr6 72679233 72679375 -76837662 - B4A SINE B4 -142 150 1 5 1139 533 234 72 65 chr6 72679395 72679575 -76837462 + B3A SINE B2 25 215 -1 5 1139 297 263 250 10 chr6 72679614 72679714 -76837323 + B1F SINE Alu 5 128 -21 5 1139 236 234 21 0 chr6 72680254 72680301 -76836736 - L2b LINE L2 -1 3374 3327 5 1139 213 39 0 0 chr6 72681035 72681061 -76835976 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1139 387 0 0 0 chr6 72681141 72681184 -76835853 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1139 510 223 0 0 chr6 72682065 72682159 -76834878 + B4 SINE B4 4 97 -195 5 1139 924 96 14 7 chr6 72682165 72682312 -76834725 + B2_Mm2 SINE B2 48 195 0 5 1139 283 311 9 133 chr6 72682310 72682536 -76834501 + B4 SINE B4 81 278 -14 5 1139 1407 219 152 12 chr6 72682721 72683044 -76833993 + MTE2a LTR MaLR 1 368 -11 5 1139 1077 130 43 0 chr6 72683095 72683256 -76833781 + URR1B DNA MER1_type 1 168 -57 5 1139 2245 163 52 3 chr6 72683294 72683662 -76833375 - ORR1B1 LTR MaLR -8 386 1 5 1139 248 227 8 16 chr6 72683821 72683903 -76833134 - L1M5 LINE L1 -612 5747 5668 5 1139 236 221 185 50 chr6 72684245 72684364 -76832673 + L1MD LINE L1 4868 5002 -1144 5 1139 985 241 35 18 chr6 72684369 72684592 -76832445 + B4 SINE B4 2 228 -64 5 1139 297 271 56 158 chr6 72684592 72684633 -76832404 + B2_Mm1t SINE B2 1 37 -156 5 1139 1326 50 72 6 chr6 72684633 72684813 -76832224 - B2_Mm2 SINE B2 -3 192 1 5 1139 425 271 69 104 chr6 72684813 72684986 -76832051 + B3A SINE B2 29 198 0 5 1139 256 307 49 74 chr6 72684976 72685057 -76831980 + B4 SINE B4 214 292 0 5 1139 198 0 0 0 chr6 72685757 72685779 -76831258 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1139 382 200 26 123 chr6 72685843 72685856 -76831181 + MT2B LTR ERVL 155 156 -445 5 1139 684 150 44 9 chr6 72685856 72685970 -76831067 + B1_Mur4 SINE Alu 1 118 -32 5 1139 312 120 0 0 chr6 72685971 72686021 -76831016 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1139 333 0 0 0 chr6 72686157 72686194 -76830843 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1139 1043 285 7 63 chr6 72686201 72686501 -76830536 + B4 SINE B4 8 290 -2 5 1139 195 294 59 118 chr6 72686984 72687188 -76829849 + MIRb SINE MIR 40 231 -37 5 1139 483 232 122 72 chr6 72688406 72688587 -76828450 - B3A SINE B2 -7 191 2 5 1139 241 229 0 0 chr6 72688675 72688723 -76828314 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1139 1072 253 66 7 chr6 72688738 72689009 -76828028 - B4A SINE B4 -5 287 1 5 1139 196 263 53 0 chr6 72689267 72689343 -76827694 + MER5A DNA MER1_type 1 80 -109 5 1139 721 134 430 0 chr6 72689384 72689533 -76827504 + B3 SINE B2 3 215 -1 5 1139 23 0 0 0 chr6 72689588 72689611 -76827426 + AT_rich Low_complexity Low_complexity 1 23 0 5 1139 1297 54 84 0 chr6 72689636 72689802 -76827235 - B2_Mm2 SINE B2 -14 181 2 5 1139 614 164 67 0 chr6 72689805 72689909 -76827128 + B1_Mus1 SINE Alu 15 125 -23 5 1139 299 282 110 8 chr6 72689909 72689923 -76827114 + ID_B1 SINE B4 95 224 0 5 1139 829 268 39 42 chr6 72689973 72690257 -76826780 - B4 SINE B4 -8 284 2 5 1139 279 293 62 42 chr6 72690382 72690478 -76826559 + MLT1J2 LTR MaLR 347 444 -4 5 1139 186 43 0 0 chr6 72691515 72691538 -76825499 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 5 1139 192 217 0 0 chr6 72691538 72691584 -76825453 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1139 253 312 95 111 chr6 72691620 72691671 -76825366 - B4A SINE B4 -36 256 216 5 1139 1066 84 157 0 chr6 72691671 72691837 -76825200 - B2_Mm2 SINE B2 -2 193 2 5 1139 253 312 95 111 chr6 72691837 72691911 -76825126 - B4A SINE B4 -77 215 133 5 1139 273 229 0 0 chr6 72691993 72692041 -76824996 - B1F SINE Alu -99 50 3 5 1139 229 384 129 25 chr6 72692414 72692577 -76824460 + MIR SINE MIR 63 242 -20 5 1139 316 217 56 67 chr6 72692728 72692817 -76824220 + B4 SINE B4 1 88 -204 5 1139 605 249 20 60 chr6 72692820 72693021 -76824016 + B3A SINE B2 2 194 -4 5 1139 425 236 155 14 chr6 72693059 72693190 -76823847 + B4 SINE B4 81 231 -61 5 1139 266 239 49 131 chr6 72693190 72693328 -76823709 + B4A SINE B4 1 127 -165 5 1139 252 322 11 11 chr6 72693407 72693498 -76823539 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 1139 407 153 143 67 chr6 72694559 72694664 -76822373 + B1F1 SINE Alu 30 142 -7 5 1139 672 258 201 21 chr6 72694674 72694908 -76822129 + B4A SINE B4 1 276 -16 5 1139 468 0 0 0 chr6 72694911 72694963 -76822074 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 5 1139 605 248 74 0 chr6 72694976 72695125 -76821912 + RSINE1 SINE B4 5 164 -1 5 1139 861 230 0 67 chr6 72695439 72695649 -76821388 + B3A SINE B2 3 198 0 5 1139 817 177 20 13 chr6 72696029 72696178 -76820859 + B1_Mur4 SINE Alu 1 150 0 5 1139 180 0 0 0 chr6 72696201 72696221 -76820816 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 5 1139 354 329 13 47 chr6 72696605 72696635 -76820402 + ID_B1 SINE B4 78 191 -33 5 1139 442 259 44 18 chr6 72696635 72696749 -76820288 + B1F SINE Alu 25 141 -8 5 1139 441 0 0 0 chr6 72696814 72696863 -76820174 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1139 277 311 0 0 chr6 72696875 72696949 -76820088 + ID4 SINE ID 10 83 0 5 1139 218 350 20 20 chr6 72696949 72696974 -76820063 + ID_B1 SINE B4 10 108 -116 5 1139 24 0 0 0 chr6 72697017 72697041 -76819996 + AT_rich Low_complexity Low_complexity 1 24 0 5 1139 505 250 6 114 chr6 72697041 72697208 -76819829 + B1_Mur2 SINE Alu 1 149 0 5 1139 433 263 66 25 chr6 72697240 72697361 -76819676 + MLT1A0 LTR MaLR 4 129 -236 5 1139 1418 84 53 53 chr6 72697653 72697879 -76819158 - URR1A DNA MER1_type 0 226 1 5 1139 21 0 0 0 chr6 72697964 72697985 -76819052 + AT_rich Low_complexity Low_complexity 1 21 0 5 1139 262 250 214 0 chr6 72698329 72698413 -76818624 + PB1D10 SINE Alu 1 102 -15 5 1139 621 267 219 32 chr6 72699633 72700012 -76817025 + L1MB7 LINE L1 5734 6183 -1 5 1139 999 154 0 20 chr6 72700437 72700589 -76816448 + B1_Mur2 SINE Alu 1 149 0 5 1139 270 115 0 0 chr6 72700591 72700643 -76816394 + (A)n Simple_repeat Simple_repeat 1 52 0 5 1139 258 234 39 39 chr6 72700889 72701067 -76815970 + (CCCCAG)n Simple_repeat Simple_repeat 1 178 0 5 1139 373 239 18 77 chr6 72701158 72701304 -76815733 + B1F SINE Alu 15 149 0 5 1139 228 254 32 0 chr6 72701304 72701367 -76815670 - L2a LINE L2 -19 3356 3292 5 1139 269 232 135 62 chr6 72701432 72701625 -76815412 - L2a LINE L2 -200 3226 3020 5 1139 730 220 55 85 chr6 72701636 72701835 -76815202 + B3A SINE B2 1 193 -5 5 1139 596 241 45 0 chr6 72701861 72701973 -76815064 + B1_Mur3 SINE Alu 2 118 -31 5 1139 818 47 9 0 chr6 72701973 72702080 -76814957 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 5 1139 396 276 68 91 chr6 72702232 72702451 -76814586 - B4A SINE B4 -74 218 5 5 1139 486 204 65 18 chr6 72702466 72702594 -76814443 - B1_Mur1 SINE Alu -2 147 12 5 1139 322 268 0 0 chr6 72703178 72703249 -76813788 - ID_B1 SINE B4 -20 204 134 5 1139 387 0 0 0 chr6 72703249 72703292 -76813745 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1139 389 224 82 27 chr6 72703343 72703453 -76813584 + PB1D9 SINE Alu 5 120 0 5 1139 213 39 0 0 chr6 72703515 72703541 -76813496 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 5 1139 948 132 21 7 chr6 72703547 72703692 -76813345 - B1_Mur1 SINE Alu -2 147 1 5 1139 222 194 127 16 chr6 72704070 72704133 -76812904 + RSINE1 SINE B4 58 127 -38 5 1139 315 0 0 0 chr6 72704176 72704211 -76812826 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1139 273 254 0 0 chr6 72704397 72704464 -76812573 + Lx9 LINE L1 6984 7050 -594 5 1139 381 274 183 62 chr6 72704873 72705130 -76811907 + B4A SINE B4 5 292 0 5 1139 21 0 0 0 chr6 72706158 72706179 -76810858 + AT_rich Low_complexity Low_complexity 1 21 0 5 1139 767 104 0 0 chr6 72706229 72706335 -76810702 - B2_Mm2 SINE B2 -88 107 2 5 1139 524 102 91 17 chr6 72706336 72706445 -76810592 - B2_Mm2 SINE B2 0 195 91 5 1139 1426 40 6 0 chr6 72706439 72706614 -76810423 + B2_Mm1a SINE B2 18 193 0 5 1139 1521 44 22 0 chr6 72706685 72706866 -76810171 + B2_Mm1t SINE B2 1 185 -8 5 1139 345 279 116 66 chr6 72706875 72707163 -76809874 - B4 SINE B4 -15 277 2 5 1139 1016 269 86 23 chr6 72707163 72707649 -76809388 - L1MB1 LINE L1 -41 6127 5611 5 1139 468 206 182 25 chr6 72707665 72707824 -76809213 - B3 SINE B2 -24 192 9 5 1139 313 360 0 11 chr6 72707892 72708066 -76808971 + G-rich Low_complexity Low_complexity 3 174 0 5 1139 296 365 6 6 chr6 72708115 72708294 -76808743 + G-rich Low_complexity Low_complexity 2 180 0 5 1139 623 257 116 47 chr6 72708315 72708548 -76808489 - ORR1D2 LTR MaLR -119 251 3 5 1139 4872 219 108 36 chr6 72708555 72709817 -76807220 - ORR1D2-int LTR MaLR -5 1365 13 5 1139 1304 241 94 9 chr6 72709823 72710154 -76806883 - ORR1D2 LTR MaLR -7 363 5 5 1139 356 323 101 42 chr6 72710631 72710799 -76806238 - B3A SINE B2 -6 192 15 5 1139 516 227 28 130 chr6 72711421 72711598 -76805439 + B3 SINE B2 26 184 -32 5 1139 740 219 0 38 chr6 72711686 72711871 -76805166 + MER5B DNA MER1_type 1 178 0 5 1139 333 123 0 0 chr6 72712033 72712098 -76804939 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1139 372 244 83 9 chr6 72712101 72712200 -76804837 - B4A SINE B4 -2 290 190 6 1139 474 289 49 14 chr6 72712888 72713032 -76804005 - B1F SINE Alu 0 149 1 6 1139 438 243 0 37 chr6 72713185 72713292 -76803745 + B4A SINE B4 17 119 -173 6 1139 234 116 0 0 chr6 72713335 72713378 -76803659 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1139 622 253 13 33 chr6 72713387 72713538 -76803499 + RSINE1 SINE B4 3 150 -15 6 1139 204 216 0 0 chr6 72713673 72713710 -76803327 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 6 1139 220 304 63 0 chr6 72713745 72713824 -76803213 - PB1 SINE Alu -40 87 4 6 1139 372 245 159 64 chr6 72714069 72714226 -76802811 - B3 SINE B2 -25 191 20 6 1139 190 143 0 31 chr6 72714522 72714587 -76802450 + T-rich Low_complexity Low_complexity 3 65 0 6 1139 1142 88 0 20 chr6 72714593 72714744 -76802293 - B1_Mus1 SINE Alu 0 148 1 6 1139 690 252 48 29 chr6 72714807 72715015 -76802022 - B3 SINE B2 -4 212 1 6 1139 696 236 48 24 chr6 72715035 72715200 -76801837 - B3A SINE B2 -24 174 6 6 1139 226 234 62 49 chr6 72715171 72715252 -76801785 - RLTR9F LTR ERVK -189 226 145 6 1139 189 0 0 0 chr6 72716333 72716354 -76800683 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 6 1139 334 358 27 43 chr6 72717383 72717567 -76799470 + MIRb SINE MIR 29 209 -59 6 1139 587 246 200 59 chr6 72717619 72717834 -76799203 + B4A SINE B4 1 230 -62 6 1139 776 205 6 90 chr6 72717834 72718011 -76799026 + RSINE1 SINE B4 4 165 0 6 1139 587 246 200 59 chr6 72718011 72718050 -76798987 + B4A SINE B4 231 291 -1 6 1139 351 274 16 57 chr6 72718156 72718280 -76798757 - MER20 DNA MER1_type -70 149 31 6 1139 1074 103 0 0 chr6 72718309 72718455 -76798582 + B1_Mus2 SINE Alu 2 147 0 6 1139 825 201 24 0 chr6 72718542 72718620 -76798417 + ID SINE ID 2 83 -141 6 1139 331 270 50 10 chr6 72718620 72718721 -76798316 + PB1D10 SINE Alu 1 105 -12 6 1139 278 320 132 54 chr6 72719956 72720085 -76796952 - L2b LINE L2 -2 3373 3235 6 1139 216 309 61 12 chr6 72720984 72721066 -76795971 + B4 SINE B4 1 86 -206 6 1139 786 253 74 0 chr6 72721098 72721288 -76795749 + ID_B1 SINE B4 21 224 0 6 1139 327 284 38 29 chr6 72721300 72721405 -76795632 + B4A SINE B4 11 116 -176 6 1139 223 279 40 128 chr6 72721405 72721448 -76795589 + B3A SINE B2 11 145 -53 6 1139 496 251 45 74 chr6 72721782 72721984 -76795053 - B3A SINE B2 0 198 3 6 1139 540 231 36 58 chr6 72722161 72722299 -76794738 + B1_Mur1 SINE Alu 8 142 -7 6 1139 189 74 0 0 chr6 72722320 72722347 -76794690 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1139 938 57 0 0 chr6 72722347 72722469 -76794568 - B1_Mus2 SINE Alu -24 123 2 6 1139 290 256 56 0 chr6 72722363 72722488 -76794549 - ORR1B1-int LTR MaLR -755 754 623 6 1139 449 243 164 63 chr6 72722598 72722787 -76794250 + L1MC5 LINE L1 6703 6910 -1051 6 1139 407 351 89 11 chr6 72722946 72723136 -76793901 - MER58A DNA MER1_type -19 205 1 6 1139 933 154 0 0 chr6 72723442 72723604 -76793433 + GA-rich Low_complexity Low_complexity 1 162 0 6 1139 578 160 27 45 chr6 72723633 72723744 -76793293 + B1_Mm SINE Alu 33 141 -6 6 1139 409 236 35 27 chr6 72723928 72724034 -76793003 + PB1D10 SINE Alu 13 117 -3 6 1139 450 0 0 0 chr6 72724061 72724111 -76792926 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1139 233 289 19 67 chr6 72724113 72724217 -76792820 + PB1D10 SINE Alu 7 105 -12 6 1139 207 0 0 0 chr6 72724280 72724303 -76792734 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1139 248 242 0 46 chr6 72724487 72724552 -76792485 - ID_B1 SINE B4 -134 90 29 6 1139 344 302 61 76 chr6 72724680 72724877 -76792160 + L1MC5 LINE L1 7165 7358 -684 6 1139 347 230 42 42 chr6 72725202 72725218 -76791819 - BC1_Mm scRNA scRNA -25 127 110 6 1139 510 130 250 9 chr6 72725218 72725334 -76791703 - B1_Mus1 SINE Alu 0 148 5 6 1139 373 191 21 31 chr6 72725334 72725435 -76791602 - ID4_ SINE ID -43 109 10 6 1139 783 60 26 35 chr6 72725463 72725594 -76791443 - B1_Mm SINE Alu 0 148 1 6 1139 206 0 0 65 chr6 72725636 72725667 -76791370 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 6 1139 510 291 88 62 chr6 72725668 72725971 -76791066 - B4 SINE B4 -2 290 1 6 1139 571 207 90 8 chr6 72726168 72726290 -76790747 + B3A SINE B2 1 132 -66 6 1139 652 216 0 46 chr6 72726587 72726718 -76790319 + B1_Mur1 SINE Alu 14 138 -11 6 1139 347 235 101 138 chr6 72726599 72726737 -76790300 + B4 SINE B4 111 243 -49 6 1139 21 0 0 0 chr6 72727055 72727076 -76789961 + AT_rich Low_complexity Low_complexity 1 21 0 6 1139 186 43 0 0 chr6 72727080 72727103 -76789934 + (TGG)n Simple_repeat Simple_repeat 2 24 0 6 1139 960 74 0 0 chr6 72727103 72727225 -76789812 + B1_Mus1 SINE Alu 17 138 -10 6 1139 188 34 0 33 chr6 72727225 72727255 -76789782 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1139 246 81 0 0 chr6 72727536 72727573 -76789464 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1139 457 162 0 24 chr6 72727573 72727655 -76789382 - PB1D9 SINE Alu -1 119 40 6 1139 769 204 0 14 chr6 72727751 72727890 -76789147 + B1_Mus2 SINE Alu 5 141 -6 6 1139 243 0 0 0 chr6 72727893 72727920 -76789117 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1139 379 278 137 13 chr6 72728098 72728251 -76788786 + B3 SINE B2 38 209 -7 6 1139 702 143 19 0 chr6 72728290 72728395 -76788642 + PB1D9 SINE Alu 1 107 -13 6 1139 291 313 121 8 chr6 72729120 72729252 -76787785 + MIRb SINE MIR 23 169 -99 6 1139 189 0 0 0 chr6 72729409 72729430 -76787607 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 1139 1035 156 124 10 chr6 72729452 72729646 -76787391 + B3 SINE B2 1 216 0 6 1139 230 0 33 0 chr6 72729658 72729688 -76787349 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 6 1139 1118 59 0 0 chr6 72729688 72729823 -76787214 - B1_Mus1 SINE Alu -13 135 1 6 1139 488 191 233 9 chr6 72729840 72729956 -76787081 + B1_Mm SINE Alu 6 147 0 6 1139 511 287 31 0 chr6 72730249 72730378 -76786659 + ID_B1 SINE B4 15 147 -77 6 1139 517 256 108 8 chr6 72730388 72730518 -76786519 + RSINE1 SINE B4 2 144 -21 6 1139 21 36 0 0 chr6 72730644 72730672 -76786365 + AT_rich Low_complexity Low_complexity 1 28 0 6 1139 180 0 0 0 chr6 72730677 72730697 -76786340 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1139 471 303 38 31 chr6 72730788 72730948 -76786089 + B3A SINE B2 38 198 0 6 1139 363 307 62 56 chr6 72731303 72731342 -76785695 + L1MEg LINE L1 1782 1824 -4260 6 1139 884 198 92 20 chr6 72731342 72731538 -76785499 + B3 SINE B2 1 210 -6 6 1139 363 307 62 56 chr6 72731538 72731585 -76785452 + L1MEg LINE L1 1825 1871 -4213 6 1139 1219 55 7 0 chr6 72731585 72731731 -76785306 + B1_Mm SINE Alu 1 147 0 6 1139 363 307 62 56 chr6 72731731 72731805 -76785232 + L1MEg LINE L1 1872 1944 -4140 6 1139 291 277 0 12 chr6 72732331 72732415 -76784622 - ID4 SINE ID 0 83 1 6 1139 29 0 0 0 chr6 72732611 72732640 -76784397 + AT_rich Low_complexity Low_complexity 1 29 0 6 1139 450 254 107 0 chr6 72732664 72732786 -76784251 + B1F1 SINE Alu 1 135 -14 6 1139 282 143 0 0 chr6 72732815 72732864 -76784173 + (CAA)n Simple_repeat Simple_repeat 3 51 0 6 1139 1164 54 0 87 chr6 72733291 72733452 -76783585 + B1_Mus1 SINE Alu 2 148 0 6 1139 192 40 0 0 chr6 72733453 72733478 -76783559 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1139 909 188 131 0 chr6 72733490 72733666 -76783371 + B3 SINE B2 3 201 -15 6 1139 488 241 18 0 chr6 72734175 72734287 -76782750 + RSINE1 SINE B4 4 117 -48 6 1139 302 300 0 35 chr6 72734782 72734896 -76782141 - PB1D10 SINE Alu -7 110 1 6 1139 391 221 93 3 chr6 72734988 72735101 -76781936 + B1_Mur1 SINE Alu 5 138 -11 6 1139 468 186 75 85 chr6 72735198 72735304 -76781733 + PB1D7 SINE Alu 8 112 -8 6 1139 1653 31 5 0 chr6 72736066 72736258 -76780779 + B2_Mm1t SINE B2 1 193 0 6 1139 562 252 12 54 chr6 72736326 72736494 -76780543 + RSINE1 SINE B4 3 163 -2 6 1139 306 0 0 0 chr6 72736498 72736532 -76780505 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1139 381 22 0 0 chr6 72736996 72737042 -76779995 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1139 231 186 0 0 chr6 72738892 72738935 -76778102 + (CCG)n Simple_repeat Simple_repeat 1 43 0 6 1139 23 86 0 0 chr6 72738956 72739014 -76778023 + GC_rich Low_complexity Low_complexity 1 58 0 6 1139 490 289 87 0 chr6 72740055 72740204 -76776833 + RSINE1 SINE B4 2 163 -2 6 1139 299 211 0 0 chr6 72740231 72740283 -76776754 + tRNA-Ala-GCY_ tRNA tRNA 16 67 -8 6 1139 574 223 44 44 chr6 72740438 72740574 -76776463 + B1_Mur2 SINE Alu 1 136 -13 6 1139 243 61 0 0 chr6 72740578 72740611 -76776426 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 6 1139 1006 117 14 0 chr6 72740829 72740974 -76776063 + B1_Mus1 SINE Alu 2 148 0 6 1139 309 303 14 64 chr6 72741277 72741418 -76775619 - MLT1D LTR MaLR 0 505 372 6 1139 1344 57 14 131 chr6 72741418 72741478 -76775559 + B2_Mm2 SINE B2 1 46 -149 6 1139 1184 41 7 0 chr6 72741478 72741623 -76775414 - B1_Mm SINE Alu 0 147 2 6 1139 1344 57 14 131 chr6 72741623 72741783 -76775254 + B2_Mm2 SINE B2 47 195 0 6 1139 1614 42 0 25 chr6 72741786 72741983 -76775054 + B2_Mm1a SINE B2 2 193 0 6 1139 1324 44 0 0 chr6 72741993 72742151 -76774886 + B2_Mm2 SINE B2 1 158 -37 6 1139 309 26 0 0 chr6 72742152 72742190 -76774847 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 7 1139 258 105 0 0 chr6 72742190 72742228 -76774809 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 7 1139 450 0 0 0 chr6 72742230 72742280 -76774757 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 7 1139 203 133 22 0 chr6 72742384 72742429 -76774608 + GA-rich Low_complexity Low_complexity 5 50 0 7 1139 329 298 78 101 chr6 72742564 72742743 -76774294 - MLT1D LTR MaLR -330 175 1 6 1139 371 311 72 4 chr6 72742756 72742992 -76774045 + L1M5 LINE L1 5414 5665 -459 7 1139 564 217 22 65 chr6 72743175 72743313 -76773724 + B1F SINE Alu 4 135 -14 7 1139 186 43 0 0 chr6 72743313 72743336 -76773701 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 7 1139 1176 57 7 0 chr6 72743336 72743477 -76773560 + B1_Mm SINE Alu 2 143 -4 7 1139 216 0 0 0 chr6 72743477 72743501 -76773536 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 7 1139 543 297 90 0 chr6 72743501 72743656 -76773381 + B3A SINE B2 1 169 -29 7 1139 247 237 82 51 chr6 72743668 72743766 -76773271 - ID_B1 SINE B4 -122 102 2 7 1139 1335 195 106 29 chr6 72743804 72744115 -76772922 - MTC LTR MaLR 0 421 87 7 1139 724 189 0 34 chr6 72744138 72744286 -76772751 - B1_Mur4 SINE Alu -7 143 1 7 1139 1121 58 0 0 chr6 72744448 72744585 -76772452 + B1_Mus1 SINE Alu 1 137 -11 7 1139 261 0 0 0 chr6 72744585 72744614 -76772423 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1139 387 0 0 0 chr6 72744673 72744716 -76772321 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1139 22 0 0 0 chr6 72744759 72744781 -76772256 + AT_rich Low_complexity Low_complexity 1 22 0 7 142 856 300 116 19 chr6 72744852 72745267 -76771770 + MER74A LTR ERVL 102 556 -2 7 1140 213 39 0 0 chr6 72745969 72745995 -76771042 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1140 300 209 46 37 chr6 72746052 72746161 -76770876 - Lx7 LINE L1 -21 7675 7566 7 1140 372 190 26 123 chr6 72746161 72746275 -76770762 + MT2B LTR ERVL 162 264 -337 7 1140 896 86 16 0 chr6 72746173 72746301 -76770736 + B1_Mur4 SINE Alu 12 141 -9 7 1140 297 0 0 0 chr6 72746301 72746334 -76770703 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1140 292 295 23 62 chr6 72746359 72746489 -76770548 + ID_B1 SINE B4 1 125 -99 7 1140 332 278 111 0 chr6 72746489 72746579 -76770458 - B3A SINE B2 -98 100 1 7 1140 32 75 0 0 chr6 72746602 72746669 -76770368 + AT_rich Low_complexity Low_complexity 1 67 0 7 1140 396 227 45 0 chr6 72746731 72746819 -76770218 - B3A SINE B2 -105 93 2 7 1140 212 231 0 0 chr6 72746825 72746864 -76770173 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1140 309 26 0 0 chr6 72746864 72746902 -76770135 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1140 597 111 11 11 chr6 72746926 72747017 -76770020 - B1_Mur3 SINE Alu -1 148 58 7 1140 252 143 133 67 chr6 72746958 72747033 -76770004 - RLTR25A LTR ERVK -516 587 508 7 1140 927 75 3 1 chr6 72747045 72747179 -76769858 - B1_Mus1 SINE Alu -12 137 2 7 1140 1941 140 75 9 chr6 72747179 72747509 -76769528 - ORR1B1 LTR MaLR -42 352 1 7 1140 24 32 0 0 chr6 72747540 72747571 -76769466 + AT_rich Low_complexity Low_complexity 1 31 0 7 1140 1320 104 10 10 chr6 72747638 72747832 -76769205 + B2_Mm2 SINE B2 1 194 -1 7 1140 954 156 42 36 chr6 72747837 72748030 -76769007 + B2_Mm2 SINE B2 2 195 0 7 1140 407 280 37 22 chr6 72748034 72748169 -76768868 + L1M5 LINE L1 5307 5443 -721 7 1140 366 42 0 0 chr6 72748289 72748337 -76768700 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1140 340 346 80 50 chr6 72748347 72748548 -76768489 + L1M5 LINE L1 5443 5649 -524 7 1140 545 285 57 6 chr6 72748615 72748774 -76768263 + MER2 DNA MER2_type 86 252 -93 7 1140 337 283 118 11 chr6 72748835 72748928 -76768109 - B3A SINE B2 -13 203 101 7 1140 2885 229 58 109 chr6 72748924 72749106 -76767931 - ORR1D2-int LTR MaLR -414 956 789 7 1140 1106 72 43 0 chr6 72749106 72749245 -76767792 + B1_Mm SINE Alu 1 145 -2 7 1140 2885 229 58 109 chr6 72749245 72749396 -76767641 - ORR1D2-int LTR MaLR -582 788 661 7 1140 1155 58 0 0 chr6 72749396 72749534 -76767503 + B1_Mus2 SINE Alu 2 139 -8 7 1140 189 0 0 0 chr6 72749534 72749555 -76767482 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1140 2885 229 58 109 chr6 72749555 72749846 -76767191 - ORR1D2-int LTR MaLR -710 660 373 7 1140 2295 33 22 0 chr6 72749846 72750118 -76766919 + L1_Mus1 LINE L1 6290 6567 0 7 1140 2885 229 58 109 chr6 72750118 72750498 -76766539 - ORR1D2-int LTR MaLR -998 372 4 7 1140 1402 193 138 9 chr6 72750498 72750823 -76766214 - ORR1D2 LTR MaLR 0 370 4 7 1140 459 218 31 3 chr6 72750840 72750968 -76766069 - B4 SINE B4 -157 135 1 7 1140 232 235 48 24 chr6 72751205 72751288 -76765749 + MTEb LTR MaLR 295 379 0 7 1140 302 268 42 0 chr6 72751351 72751422 -76765615 + PB1D7 SINE Alu 6 79 -41 7 1140 925 25 8 48 chr6 72751453 72751579 -76765458 + B1_Mm SINE Alu 27 147 0 7 1140 215 93 0 23 chr6 72751588 72751632 -76765405 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1140 787 184 0 35 chr6 72751822 72751963 -76765074 - B1_Mus1 SINE Alu -2 146 11 7 1140 393 293 51 122 chr6 72751825 72752001 -76765036 - B4 SINE B4 -71 221 61 7 1140 681 282 0 24 chr6 72752001 72752168 -76764869 - RSINE1 SINE B4 0 165 3 7 1140 393 293 51 122 chr6 72752168 72752228 -76764809 - B4 SINE B4 -232 60 2 7 1140 238 158 0 0 chr6 72752428 72752466 -76764571 - B4 SINE B4 -6 286 249 7 1140 372 263 63 70 chr6 72752494 72752544 -76764493 - B4A SINE B4 -121 171 125 7 1140 455 0 0 18 chr6 72752544 72752600 -76764437 + (TTATA)n Simple_repeat Simple_repeat 2 56 0 7 1140 372 273 62 69 chr6 72752600 72752713 -76764324 - B4A SINE B4 -168 124 3 7 1140 410 127 0 14 chr6 72752830 72752902 -76764135 + (CCCCCT)n Simple_repeat Simple_repeat 1 71 0 7 1140 540 284 68 45 chr6 72752906 72753083 -76763954 - ID_B1 SINE B4 -27 197 17 7 1140 734 257 14 54 chr6 72753124 72753346 -76763691 - B3 SINE B2 -3 213 1 7 1140 306 0 0 0 chr6 72753352 72753386 -76763651 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1140 338 171 29 0 chr6 72753525 72753595 -76763442 - B4A SINE B4 -220 72 1 7 1140 655 319 55 12 chr6 72753659 72753913 -76763124 + L1MC LINE L1 5384 5648 -2234 7 1140 482 119 0 12 chr6 72754095 72754180 -76762857 + (TG)n Simple_repeat Simple_repeat 1 84 0 7 1140 294 321 117 24 chr6 72754181 72754430 -76762607 - B4A SINE B4 -18 274 3 7 1140 288 328 106 98 chr6 72754439 72754713 -76762324 - Charlie6 DNA MER1_type -30 3470 3195 7 1140 557 186 56 28 chr6 72754729 72754873 -76762164 + B1F2 SINE Alu 1 148 -1 7 1140 1497 43 5 31 chr6 72754915 72755106 -76761931 - B2_Mm1t SINE B2 -7 186 1 7 1140 591 291 46 0 chr6 72755166 72755317 -76761720 + RSINE1 SINE B4 8 165 0 7 1140 581 301 8 0 chr6 72755379 72755512 -76761525 + RSINE1 SINE B4 2 135 -30 7 1140 936 72 0 0 chr6 72755564 72755689 -76761348 + (GAA)n Simple_repeat Simple_repeat 2 126 0 7 1140 1172 75 0 0 chr6 72755691 72755837 -76761200 + B1_Mm SINE Alu 2 147 0 7 1140 540 274 0 0 chr6 72755962 72756075 -76760962 + PB1D7 SINE Alu 1 113 -7 7 1140 334 239 14 0 chr6 72756265 72756336 -76760701 - ID4 SINE ID -6 77 6 7 1140 650 273 131 0 chr6 72756366 72756564 -76760473 - ID_B1 SINE B4 0 224 1 7 1140 884 171 20 0 chr6 72756603 72756749 -76760288 - B1_Mur4 SINE Alu 0 150 2 7 1140 492 306 7 68 chr6 72756754 72756901 -76760136 - ID_B1 SINE B4 0 224 87 7 1140 1484 67 0 49 chr6 72756933 72756957 -76760080 - B2_Mm2 SINE B2 0 195 178 7 1140 722 55 0 0 chr6 72756957 72757048 -76759989 + 4.5SRNA scRNA scRNA 1 91 -3 7 1140 1687 22 0 0 chr6 72757048 72757233 -76759804 + B2_Mm1t SINE B2 2 186 -7 7 1140 1484 67 0 49 chr6 72757233 72757412 -76759625 - B2_Mm2 SINE B2 -18 177 2 7 1140 704 87 0 0 chr6 72757412 72757504 -76759533 - 4.5SRNA scRNA scRNA -2 92 1 7 1140 429 20 0 0 chr6 72757583 72757633 -76759404 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1140 21 36 0 0 chr6 72757633 72757661 -76759376 + AT_rich Low_complexity Low_complexity 1 28 0 7 1140 509 330 63 37 chr6 72758488 72758677 -76758360 + ID_B1 SINE B4 30 223 -1 7 1140 450 53 0 0 chr6 72758681 72758738 -76758299 + (GGAGA)n Simple_repeat Simple_repeat 5 61 0 7 1140 590 304 6 18 chr6 72758968 72759132 -76757905 + RSINE1 SINE B4 4 165 0 7 1140 435 19 0 0 chr6 72759134 72759186 -76757851 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 7 1140 859 221 23 6 chr6 72759311 72759484 -76757553 + B3 SINE B2 34 209 -7 7 1140 429 36 0 0 chr6 72759499 72759554 -76757483 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1140 891 248 15 5 chr6 72760627 72760830 -76756207 + ID_B1 SINE B4 1 205 -19 7 1140 228 111 0 0 chr6 72760832 72760868 -76756169 + (G)n Simple_repeat Simple_repeat 1 36 0 7 1140 195 129 0 0 chr6 72760866 72760897 -76756140 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 7 1140 313 273 0 0 chr6 72761291 72761357 -76755680 + B1F2 SINE Alu 15 80 -69 7 1140 1161 70 0 0 chr6 72761361 72761504 -76755533 + B1_Mm SINE Alu 5 147 0 7 1140 198 0 0 0 chr6 72761504 72761526 -76755511 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1140 449 167 91 91 chr6 72761533 72761632 -76755405 - RSINE1 SINE B4 -19 146 48 7 1140 274 128 0 0 chr6 72761745 72761784 -76755253 + B1F SINE Alu 97 135 -14 7 1140 240 35 0 0 chr6 72761784 72761813 -76755224 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1140 227 290 65 0 chr6 72761856 72761918 -76755119 - B1F1 SINE Alu -77 72 7 7 1140 556 203 22 102 chr6 72761876 72762013 -76755024 - ID_B1 SINE B4 -95 129 4 7 1140 243 246 0 30 chr6 72762151 72762218 -76754819 + (TATG)n Simple_repeat Simple_repeat 4 68 0 7 1140 264 261 28 28 chr6 72762356 72762370 -76754667 - PB1D7 SINE Alu -21 99 85 8 1140 1288 90 16 43 chr6 72762370 72762556 -76754481 - B2_Mm2 SINE B2 -14 181 1 8 1140 354 196 0 0 chr6 72762556 72762612 -76754425 - B1_Mur4 SINE Alu -65 85 30 8 1140 363 96 0 0 chr6 72762621 72762673 -76754364 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1140 260 296 11 22 chr6 72762726 72762816 -76754221 - B4A SINE B4 -203 89 1 8 1140 442 237 73 0 chr6 72762988 72763093 -76753944 + B1F2 SINE Alu 2 112 -5 8 1140 207 100 0 0 chr6 72763100 72763130 -76753907 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 8 1140 387 0 0 0 chr6 72763398 72763441 -76753596 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1140 888 155 0 26 chr6 72763447 72763599 -76753438 + B1_Mur3 SINE Alu 2 149 0 8 1140 422 267 0 57 chr6 72763688 72763811 -76753226 + RSINE1 SINE B4 50 165 0 8 1140 1245 99 10 16 chr6 72764075 72764269 -76752768 + B2_Mm2 SINE B2 1 193 -2 8 1140 225 0 0 0 chr6 72764297 72764322 -76752715 + (TC)n Simple_repeat Simple_repeat 2 26 0 8 1140 1269 48 0 0 chr6 72764326 72764473 -76752564 - B1_Mus2 SINE Alu 0 147 1 8 1140 827 141 7 15 chr6 72764478 72764615 -76752422 - B2_Mm1t SINE B2 -8 185 50 8 1140 662 242 0 0 chr6 72764662 72764790 -76752247 - B1_Mur2 SINE Alu -21 128 1 8 1140 347 350 50 8 chr6 72764685 72764806 -76752231 - B4 SINE B4 -98 194 69 8 1140 471 311 8 0 chr6 72764979 72765098 -76751939 + RSINE1 SINE B4 14 133 -32 8 1140 869 209 27 45 chr6 72765167 72765387 -76751650 + B3 SINE B2 1 216 0 8 1140 1121 86 0 0 chr6 72765418 72765558 -76751479 + B1_Mus2 SINE Alu 1 140 -7 8 1140 312 48 0 0 chr6 72765561 72765603 -76751434 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 8 1140 944 215 59 10 chr6 72765701 72765903 -76751134 + B3 SINE B2 1 212 -4 8 1140 666 211 163 0 chr6 72765952 72766099 -76750938 - B3A SINE B2 -26 172 2 8 1140 381 275 46 0 chr6 72766103 72766212 -76750825 - PB1D7 SINE Alu -6 114 1 8 1140 814 175 80 0 chr6 72766355 72766492 -76750545 + B1_Mur2 SINE Alu 1 148 -1 8 1140 569 265 157 39 chr6 72766558 72766717 -76750320 - Tigger5 DNA MER2_type 0 2406 2222 8 1140 2591 77 6 0 chr6 72766717 72767040 -76749997 + ORR1A2 LTR MaLR 1 325 -2 8 1140 569 265 157 39 chr6 72767040 72767084 -76749953 - Tigger5 DNA MER2_type -185 2221 2179 8 1140 338 122 0 0 chr6 72767382 72767431 -76749606 + MTC LTR MaLR 66 114 -307 8 1140 576 0 0 0 chr6 72767431 72767495 -76749542 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 8 1140 315 0 0 0 chr6 72767501 72767536 -76749501 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1140 252 86 0 0 chr6 72767539 72767574 -76749463 + (TA)n Simple_repeat Simple_repeat 2 36 0 8 1140 479 96 0 14 chr6 72767574 72767648 -76749389 - B1_Mus2 SINE Alu -2 145 73 8 1140 1774 159 27 30 chr6 72767678 72768009 -76749028 + MTC LTR MaLR 92 421 0 8 1140 737 175 8 0 chr6 72768049 72768169 -76748868 + ID_B1 SINE B4 95 215 -9 8 1140 244 111 64 43 chr6 72768130 72768177 -76748860 + PB1D10 SINE Alu 67 114 -3 8 1140 223 299 84 110 chr6 72768405 72768474 -76748563 + ID SINE ID 2 66 -158 8 1140 235 252 10 176 chr6 72768474 72768588 -76748449 + B1F2 SINE Alu 1 96 -53 8 1140 762 161 38 26 chr6 72768602 72768750 -76748287 + B1_Mur2 SINE Alu 1 147 -2 8 1140 446 49 0 16 chr6 72768753 72768815 -76748222 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 8 1140 423 238 0 77 chr6 72768815 72768906 -76748131 + RSINE1 SINE B4 82 165 0 8 1140 353 248 170 1 chr6 72768938 72769087 -76747950 + L1M4 LINE L1 5593 5766 -407 8 1140 2564 62 16 0 chr6 72769110 72769432 -76747605 + ORR1A2 LTR MaLR 1 327 0 8 1140 189 74 0 0 chr6 72769510 72769537 -76747500 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1140 1117 68 7 20 chr6 72769537 72769679 -76747358 - B1_Mus1 SINE Alu -7 141 2 8 1140 556 259 165 0 chr6 72769711 72769778 -76747259 + ID_B1 SINE B4 1 93 -131 8 1140 292 284 54 18 chr6 72769778 72769871 -76747166 + PB1D10 SINE Alu 3 101 -16 8 1140 1112 90 14 0 chr6 72769871 72770016 -76747021 + B1_Mus1 SINE Alu 2 148 0 8 1140 292 284 54 18 chr6 72770016 72770033 -76747004 + PB1D10 SINE Alu 102 116 -1 8 1140 183 42 0 0 chr6 72770038 72770062 -76746975 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1140 337 247 101 20 chr6 72770136 72770235 -76746802 + MT2B LTR ERVL 152 258 -343 8 1140 613 197 0 33 chr6 72770160 72770281 -76746756 + B1_Mus1 SINE Alu 30 146 -2 8 1140 1145 106 9 14 chr6 72770281 72771146 -76745891 + (CATA)n Simple_repeat Simple_repeat 1 861 0 8 1140 688 215 114 91 chr6 72771191 72771360 -76745677 - B3 SINE B2 0 216 36 8 1140 1220 61 0 0 chr6 72771360 72771507 -76745530 - B1_Mus1 SINE Alu 0 148 2 8 1140 688 215 114 91 chr6 72771507 72771547 -76745490 - B3 SINE B2 -181 35 2 8 1140 902 209 0 0 chr6 72771601 72771749 -76745288 - B1_Mur1 SINE Alu 0 149 2 8 1140 1024 96 121 0 chr6 72771789 72771955 -76745082 + B2_Mm2 SINE B2 3 188 -7 8 1140 320 291 140 14 chr6 72771996 72772139 -76744898 + ORR1E LTR MaLR 1 161 -198 8 1140 251 212 176 0 chr6 72772243 72772328 -76744709 + Tigger5 DNA MER2_type 2197 2296 -110 8 1140 660 215 7 71 chr6 72772401 72772556 -76744481 - B1_Mur2 SINE Alu 0 149 5 8 1140 853 273 163 10 chr6 72772565 72772854 -76744183 + ORR1D2 LTR MaLR 33 365 -5 8 1140 476 263 0 32 chr6 72772914 72773050 -76743987 + B1F SINE Alu 1 127 -21 8 1140 405 0 0 0 chr6 72773074 72773119 -76743918 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 1140 893 336 110 16 chr6 72773174 72773676 -76743361 + MLT1F-int LTR MaLR 918 1466 -23 8 1140 716 147 112 0 chr6 72773680 72773796 -76743241 + B1_Mur3 SINE Alu 5 133 -16 8 1140 867 34 8 16 chr6 72773805 72773926 -76743111 + (GAGAA)n Simple_repeat Simple_repeat 5 124 0 8 1140 363 217 36 0 chr6 72774125 72774208 -76742829 + MTEb LTR MaLR 1 86 -293 8 1140 207 0 0 0 chr6 72774228 72774251 -76742786 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 1140 268 59 0 0 chr6 72774251 72774285 -76742752 - B2_Mm1a SINE B2 -33 160 127 8 1140 1367 67 17 6 chr6 72774320 72774499 -76742538 - B2_Mm2 SINE B2 -14 181 1 8 1140 180 97 0 0 chr6 72774503 72774534 -76742503 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1140 619 94 128 28 chr6 72774537 72774646 -76742391 - PB1D9 SINE Alu 0 120 1 8 1140 682 270 96 48 chr6 72774647 72774919 -76742118 + MTEb LTR MaLR 74 358 -21 8 1140 202 182 0 0 chr6 72774920 72774953 -76742084 + G-rich Low_complexity Low_complexity 1 33 0 8 1140 270 0 0 0 chr6 72775940 72775970 -76741067 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1140 382 274 109 63 chr6 72776043 72776218 -76740819 - B3A SINE B2 -12 186 4 8 1140 963 273 90 42 chr6 72776520 72776876 -76740161 + RLTR14 LTR ERV1 2 374 -8 8 1140 222 303 135 0 chr6 72776984 72777073 -76739964 + MIRb SINE MIR 115 215 -53 8 1140 1637 47 0 0 chr6 72777175 72777368 -76739669 + B2_Mm1a SINE B2 1 193 0 8 1140 687 154 96 16 chr6 72777369 72777494 -76739543 - B1_Mur1 SINE Alu -13 136 2 8 1140 362 240 0 127 chr6 72777535 72777645 -76739392 - PB1D7 SINE Alu -8 112 17 8 1140 189 107 0 0 chr6 72777928 72777956 -76739081 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 8 1140 665 213 47 0 chr6 72777962 72778089 -76738948 - B1_Mur2 SINE Alu -15 134 2 8 1140 1857 99 30 63 chr6 72778251 72778584 -76738453 + RLTRETN_Mm LTR ERVK 1 322 0 8 1140 630 284 97 26 chr6 72778626 72778854 -76738183 - B4A SINE B4 0 292 49 8 1140 560 285 20 20 chr6 72778927 72779124 -76737913 + B3A SINE B2 2 198 0 8 1140 273 307 0 0 chr6 72779174 72779249 -76737788 - ID4_ SINE ID -1 82 8 8 1140 813 118 0 0 chr6 72779297 72779416 -76737621 + RMER10A LTR ERVL 1 119 -323 8 1140 1335 136 63 17 chr6 72779410 72779649 -76737388 + ORR1B1 LTR MaLR 137 386 -8 8 1140 216 0 0 0 chr6 72779778 72779802 -76737235 + (ATG)n Simple_repeat Simple_repeat 1 24 0 8 1140 908 70 141 0 chr6 72779802 72779930 -76737107 - B1_Mus1 SINE Alu -2 146 1 8 1140 1178 192 29 0 chr6 72779946 72780154 -76736883 - B3 SINE B2 0 216 3 8 1140 808 184 15 0 chr6 72780176 72780312 -76736725 - B1_Mm SINE Alu -6 141 4 8 1140 471 229 68 15 chr6 72780361 72780494 -76736543 - B3 SINE B2 -76 140 1 8 1140 1129 83 36 7 chr6 72780811 72781004 -76736033 - B2_Mm1t SINE B2 -6 189 9 8 1140 1211 41 7 0 chr6 72781034 72781180 -76735857 - B1_Mus1 SINE Alu -1 147 1 8 1140 1204 28 0 14 chr6 72781699 72781834 -76735203 + B1_Mus1 SINE Alu 1 135 -13 8 1140 372 22 0 0 chr6 72781834 72781879 -76735158 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 8 1140 709 114 1 6 chr6 72782067 72782187 -76734850 - B3 SINE B2 -78 117 1 8 1140 495 302 55 136 chr6 72782229 72782329 -76734708 + B4A SINE B4 1 134 -158 8 1140 588 150 10 0 chr6 72782329 72782429 -76734608 + PB1D9 SINE Alu 14 114 -6 8 1140 495 302 55 136 chr6 72782429 72782539 -76734498 + B4A SINE B4 135 285 -7 8 1140 189 147 0 0 chr6 72782575 72782609 -76734428 + (CATA)n Simple_repeat Simple_repeat 2 35 0 8 1140 561 269 100 18 chr6 72783228 72783398 -76733639 - ID_B1 SINE B4 -26 198 15 8 1140 1377 94 16 5 chr6 72783669 72783861 -76733176 - B2_Mm2 SINE B2 0 195 2 8 1140 485 281 79 0 chr6 72784382 72784521 -76732516 + ID_B1 SINE B4 1 150 -74 8 1140 339 235 58 12 chr6 72784568 72784654 -76732383 + RMER5 LTR ERV1 440 529 -5 9 1140 660 272 19 6 chr6 72785627 72785786 -76731251 + RSINE1 SINE B4 1 161 -4 9 1140 332 252 5 147 chr6 72785965 72785978 -76731059 - ID_B1 SINE B4 -39 185 131 9 1140 465 219 0 127 chr6 72785978 72786088 -76730949 - PB1 SINE Alu -53 96 1 9 1140 332 252 5 147 chr6 72786088 72786099 -76730938 - ID_B1 SINE B4 -39 130 72 9 1140 345 284 59 0 chr6 72786204 72786306 -76730731 + PB1D10 SINE Alu 5 112 -5 9 1140 807 219 67 34 chr6 72786596 72786804 -76730233 + ID_B1 SINE B4 2 216 -8 9 1140 695 230 88 44 chr6 72787019 72787224 -76729813 + B3 SINE B2 3 216 0 9 1140 318 224 143 0 chr6 72787231 72787329 -76729708 + PB1D10 SINE Alu 1 112 -5 9 1140 588 313 16 6 chr6 72787404 72787587 -76729450 + B3 SINE B2 2 186 -30 9 1140 252 77 0 0 chr6 72787589 72787628 -76729409 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1140 246 278 67 0 chr6 72788757 72788771 -76728266 - B4A SINE B4 -109 183 88 9 1140 342 211 53 0 chr6 72788771 72788847 -76728190 - B1_Mus2 SINE Alu -65 82 3 9 1140 226 293 109 20 chr6 72789312 72789413 -76727624 + PB1D10 SINE Alu 1 110 -7 9 1140 666 186 27 20 chr6 72790052 72790200 -76726837 + B1_Mur3 SINE Alu 1 149 0 9 1140 288 53 0 0 chr6 72790987 72791025 -76726012 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1140 35 0 0 0 chr6 72792389 72792424 -76724613 + AT_rich Low_complexity Low_complexity 1 35 0 9 1140 208 137 0 56 chr6 72793303 72793357 -76723680 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 9 1140 386 225 109 58 chr6 72793598 72793735 -76723302 - B1_Mur1 SINE Alu -5 144 1 9 1140 1205 48 7 0 chr6 72793973 72794118 -76722919 + B1_Mus2 SINE Alu 1 146 -1 9 1140 211 233 81 14 chr6 72794305 72794379 -76722658 - MIR SINE MIR -119 143 65 9 1140 1183 75 0 0 chr6 72795027 72795174 -76721863 - B1_Mus2 SINE Alu 0 147 1 9 1140 318 256 12 12 chr6 72795248 72795331 -76721706 - ID_B1 SINE B4 -34 190 108 9 1140 1401 59 48 16 chr6 72795331 72795520 -76721517 + B2_Mm2 SINE B2 1 195 0 9 1140 298 207 103 0 chr6 72795565 72795623 -76721414 + PB1D7 SINE Alu 41 104 -16 9 1140 1485 54 11 0 chr6 72795788 72795974 -76721063 + B2_Mm1t SINE B2 1 188 -5 9 1140 749 252 6 0 chr6 72796113 72796272 -76720765 - B3A SINE B2 -38 160 1 9 1140 312 174 310 11 chr6 72796272 72796349 -76720688 - B1_Mur3 SINE Alu -44 105 3 9 1140 241 250 17 0 chr6 72796296 72796356 -76720681 - B4 SINE B4 -151 141 81 9 1140 994 214 54 44 chr6 72796435 72796752 -76720285 - RLTR15 LTR ERVK -36 323 4 9 1140 283 184 0 0 chr6 72796756 72796805 -76720232 - B1F SINE Alu -100 49 1 9 1140 191 267 129 91 chr6 72797137 72797269 -76719768 - MIR3 SINE MIR -70 138 2 9 1140 300 244 77 11 chr6 72797384 72797475 -76719562 - PB1D10 SINE Alu -8 109 13 9 1140 525 275 62 6 chr6 72797402 72797563 -76719474 - ID_B1 SINE B4 -54 170 1 9 1140 609 212 105 13 chr6 72797613 72797766 -76719271 - B3 SINE B2 -12 204 38 9 1140 533 247 119 11 chr6 72797807 72797983 -76719054 - B4A SINE B4 -86 206 12 9 1140 24 0 0 0 chr6 72798040 72798064 -76718973 + AT_rich Low_complexity Low_complexity 1 24 0 9 1140 190 261 174 0 chr6 72798754 72798823 -76718214 + L2a LINE L2 3307 3387 -39 9 1140 332 206 16 130 chr6 72799669 72799792 -76717245 + MT2B LTR ERVL 156 264 -337 9 1140 1028 63 0 21 chr6 72799682 72799827 -76717210 + B1_Mus1 SINE Alu 7 148 0 9 1140 221 70 43 65 chr6 72799832 72799878 -76717159 + A-rich Low_complexity Low_complexity 4 48 0 9 1140 373 295 19 0 chr6 72800844 72800949 -76716088 + B4 SINE B4 119 225 -67 9 1140 631 151 16 0 chr6 72800950 72801076 -76715961 + GA-rich Low_complexity Low_complexity 4 131 0 9 1140 1924 167 53 6 chr6 72801105 72801466 -76715571 + ORR1B1 LTR MaLR 3 380 -14 9 1140 313 153 0 27 chr6 72801574 72801648 -76715389 + GA-rich Low_complexity Low_complexity 1 72 0 9 1140 333 316 8 58 chr6 72803090 72803211 -76713826 + B4 SINE B4 35 149 -143 9 1140 1250 83 48 42 chr6 72803726 72803915 -76713122 - B2_Mm2 SINE B2 -4 191 2 9 1140 418 261 0 43 chr6 72804201 72804293 -76712744 + PB1D9 SINE Alu 3 90 -30 9 1140 1281 27 0 0 chr6 72805096 72805243 -76711794 - B1_Mm SINE Alu 0 147 1 9 1140 547 307 76 40 chr6 72805351 72805490 -76711547 + Lx8 LINE L1 7066 7213 -260 9 1140 1395 132 123 65 chr6 72805490 72805798 -76711239 + ORR1A3 LTR MaLR 1 326 0 9 1140 547 307 76 40 chr6 72805798 72805882 -76711155 + Lx8 LINE L1 7214 7297 -176 9 1140 219 333 48 0 chr6 72806227 72806290 -76710747 - ID4 SINE ID -11 72 7 9 1140 219 309 14 56 chr6 72806733 72806805 -76710232 + RSINE1 SINE B4 39 107 -58 9 1140 187 54 54 0 chr6 72806832 72806869 -76710168 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 9 1140 249 33 0 0 chr6 72806877 72806907 -76710130 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 9 1140 335 39 39 0 chr6 72807646 72807698 -76709339 + B1_Mur4 SINE Alu 97 150 0 9 1140 229 100 317 0 chr6 72809089 72809149 -76707888 - B1_Mus2 SINE Alu -51 96 18 9 1140 384 69 17 0 chr6 72809556 72809614 -76707423 - B1_Mm SINE Alu 0 147 89 9 1140 659 79 0 0 chr6 72809636 72809725 -76707312 - B1_Mus2 SINE Alu -2 145 57 9 1140 233 216 0 38 chr6 72809744 72809797 -76707240 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 9 1140 270 240 79 40 chr6 72809851 72809977 -76707060 + ID_B1 SINE B4 91 221 -3 9 1140 683 271 162 99 chr6 72810037 72810878 -76706159 + L1M4 LINE L1 3992 4946 -1238 9 1140 423 170 22 43 chr6 72810878 72810970 -76706067 + PB1D9 SINE Alu 24 113 -7 9 1140 683 271 162 99 chr6 72810970 72811461 -76705576 + L1M4 LINE L1 4947 5506 -678 9 1140 410 222 44 0 chr6 72812434 72812524 -76704513 - PB1D10 SINE Alu 0 117 24 9 1140 415 250 0 50 chr6 72812575 72812676 -76704361 - PB1D9 SINE Alu -12 108 13 9 1140 207 0 0 0 chr6 72812680 72812703 -76704334 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1140 1248 35 0 0 chr6 72812703 72812848 -76704189 - B1_Mm SINE Alu -1 146 2 9 1140 351 197 0 0 chr6 72812899 72812965 -76704072 + B1_Mur2 SINE Alu 74 139 -10 9 1140 22 0 0 0 chr6 72813056 72813078 -76703959 + AT_rich Low_complexity Low_complexity 1 22 0 9 1140 643 150 102 8 chr6 72813222 72813350 -76703687 + B1_Mur4 SINE Alu 10 149 -1 9 1140 1242 127 16 0 chr6 72813352 72813541 -76703496 + B2_Mm1a SINE B2 2 193 0 9 1140 652 206 68 40 chr6 72813647 72813824 -76703213 + L1MB3 LINE L1 5931 6112 -71 9 1140 918 191 104 86 chr6 72814059 72814386 -76702651 - ORR1D1 LTR MaLR -41 333 1 9 1140 1949 115 95 28 chr6 72814473 72814832 -76702205 + ORR1B1 LTR MaLR 4 386 -8 9 1140 275 146 0 18 chr6 72814848 72814904 -76702133 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 9 1140 739 83 347 20 chr6 72814995 72815142 -76701895 + B2_Mm2 SINE B2 1 195 0 9 1140 432 270 0 103 chr6 72815248 72815384 -76701653 - B3A SINE B2 -73 125 4 9 1140 282 89 22 0 chr6 72815390 72815435 -76701602 - PB1D9 SINE Alu -1 119 74 9 1140 447 240 87 27 chr6 72815689 72815839 -76701198 + RSINE1 SINE B4 7 165 0 9 1140 447 19 0 0 chr6 72816095 72816147 -76700890 + (TC)n Simple_repeat Simple_repeat 1 52 0 9 1140 995 32 0 0 chr6 72816163 72816289 -76700748 - B1_Mus1 SINE Alu -1 147 22 9 1140 326 175 33 121 chr6 72816399 72816490 -76700547 - RSINE1 SINE B4 0 165 83 9 1140 423 0 0 0 chr6 72816653 72816700 -76700337 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1140 337 78 0 19 chr6 72816786 72816838 -76700199 + B2_Mm2 SINE B2 92 142 -53 9 1140 648 153 325 0 chr6 72817021 72817184 -76699853 - B3 SINE B2 0 216 1 9 1140 249 195 146 47 chr6 72817435 72817532 -76699505 + PB1D9 SINE Alu 18 120 0 9 1140 180 0 0 0 chr6 72817594 72817614 -76699423 + (CCA)n Simple_repeat Simple_repeat 3 22 0 9 1140 1285 93 22 0 chr6 72817712 72817894 -76699143 - B2_Mm2 SINE B2 -7 188 3 9 1140 334 214 22 77 chr6 72817984 72818075 -76698962 - B4 SINE B4 -206 86 1 9 1140 234 236 0 0 chr6 72818194 72818249 -76698788 + tRNA-Ala-GCY_ tRNA tRNA 14 68 -7 9 1140 551 106 21 11 chr6 72818402 72818497 -76698540 - PB1D9 SINE Alu -2 118 23 9 1140 1078 163 107 0 chr6 72819984 72820180 -76696857 + URR1B DNA MER1_type 5 221 -4 9 1140 199 244 13 13 chr6 72821239 72821318 -76695719 + GA-rich Low_complexity Low_complexity 5 83 0 9 1140 617 178 0 56 chr6 72821470 72821595 -76695442 + B3A SINE B2 4 121 -77 9 1140 292 256 0 25 chr6 72821741 72821821 -76695216 + ID4 SINE ID 2 79 -4 9 1140 315 310 49 7 chr6 72821919 72822062 -76694975 - L1ME3A LINE L1 -32 6141 5993 9 1140 866 277 38 110 chr6 72822197 72822696 -76694341 - MER82 DNA MER2_type -156 497 35 9 1140 1219 118 32 5 chr6 72822729 72822917 -76694120 + B2_Mm2 SINE B2 1 193 -2 9 1140 597 105 211 0 chr6 72823040 72823154 -76693883 - B1_Mus2 SINE Alu 0 147 10 9 1140 237 180 120 0 chr6 72823880 72823930 -76693107 - B4 SINE B4 -69 223 168 9 1140 280 140 53 0 chr6 72823899 72823956 -76693081 - B1_Mur1 SINE Alu -40 109 50 9 1140 507 33 0 0 chr6 72823980 72824041 -76692996 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1140 353 140 204 0 chr6 72824800 72824893 -76692144 - PB1D9 SINE Alu -7 113 2 1 1140 495 87 0 0 chr6 72824924 72824993 -76692044 + (TATG)n Simple_repeat Simple_repeat 2 70 0 1 1140 261 0 0 0 chr6 72824993 72825022 -76692015 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1140 302 228 24 37 chr6 72825241 72825323 -76691714 + PB1D9 SINE Alu 21 101 -19 1 1140 250 220 0 0 chr6 72825442 72825492 -76691545 - MLT2B3 LTR ERVL -504 50 1 1 1140 502 245 57 50 chr6 72825581 72825740 -76691297 - B3A SINE B2 -38 160 1 1 1140 574 258 74 25 chr6 72825807 72825970 -76691067 - B3 SINE B2 -6 210 40 1 1140 505 229 19 9 chr6 72825967 72826073 -76690964 - B1_Mur2 SINE Alu -32 117 11 1 1140 472 177 42 0 chr6 72826149 72826245 -76690792 + B1_Mur2 SINE Alu 45 144 -5 1 1140 323 141 0 61 chr6 72826593 72826681 -76690356 + PB1D10 SINE Alu 46 117 0 1 1140 5005 23 0 0 chr6 72827163 72827723 -76689314 - MERVL-int LTR ERVL -1378 4107 3548 1 1140 335 278 9 44 chr6 72827858 72827971 -76689066 + PB1D10 SINE Alu 2 110 -7 1 1140 472 324 29 7 chr6 72827991 72828128 -76688909 + RSINE1 SINE B4 1 140 -25 1 1140 246 128 0 0 chr6 72828128 72828167 -76688870 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1140 271 204 344 0 chr6 72828168 72828261 -76688776 + RSINE1 SINE B4 3 127 -38 1 1140 228 226 30 61 chr6 72828850 72828916 -76688121 - ID4 SINE ID -15 68 5 1 1140 671 208 136 23 chr6 72828949 72829126 -76687911 - B3A SINE B2 0 198 2 1 1140 358 167 88 25 chr6 72829639 72829719 -76687318 + B4A SINE B4 167 251 -41 1 1140 257 253 48 48 chr6 72829904 72829987 -76687050 + PB1D9 SINE Alu 37 119 -1 1 1140 43 20 0 0 chr6 72830697 72830747 -76686290 + AT_rich Low_complexity Low_complexity 1 50 0 1 1140 1628 27 5 0 chr6 72830798 72830985 -76686052 - B2_Mm1t SINE B2 -5 188 1 1 1140 187 158 105 0 chr6 72831059 72831097 -76685940 - L2a LINE L2 -15 3411 3370 1 1140 257 324 96 27 chr6 72831067 72831254 -76685783 - MIR SINE MIR -21 241 42 1 1140 448 174 107 10 chr6 72831708 72831823 -76685214 - MTD LTR MaLR -258 163 38 1 1140 326 169 29 44 chr6 72831900 72831968 -76685069 - B1_Mur4 SINE Alu -9 141 75 1 1140 528 293 0 71 chr6 72832525 72832675 -76684362 + B3 SINE B2 50 191 -25 1 1140 1032 208 91 68 chr6 72832675 72833103 -76683934 - RMER10A LTR ERVL -2 440 3 1 1140 583 293 0 71 chr6 72833103 72833121 -76683916 + B3 SINE B2 192 206 -10 1 1140 281 325 132 0 chr6 72833124 72833238 -76683799 + MER58B DNA MER1_type 1 129 -212 1 1140 223 268 141 0 chr6 72833240 72833311 -76683726 + ID SINE ID 3 83 -141 1 1140 498 254 65 65 chr6 72833307 72833492 -76683545 + MER58B DNA MER1_type 114 298 -43 1 1140 421 200 93 28 chr6 72834483 72834591 -76682446 - PB1D10 SINE Alu -2 115 1 1 1140 228 245 51 65 chr6 72834759 72834861 -76682176 - MIRb SINE MIR -31 237 127 1 1140 272 242 147 0 chr6 72834866 72834961 -76682076 + MIRc SINE MIR 25 133 -135 1 1140 776 201 14 0 chr6 72835114 72835258 -76681779 + B1_Mur4 SINE Alu 5 150 0 1 1140 312 137 0 0 chr6 72835422 72835473 -76681564 + (A)n Simple_repeat Simple_repeat 1 51 0 1 1140 1321 81 16 31 chr6 72835583 72835774 -76681263 + B2_Mm2 SINE B2 2 189 -6 1 1140 432 0 0 0 chr6 72836256 72836304 -76680733 + (CAGGA)n Simple_repeat Simple_repeat 1 48 0 1 1140 635 229 100 19 chr6 72836638 72836798 -76680239 - MER58A DNA MER1_type -15 209 37 1 1140 230 244 69 58 chr6 72836778 72836865 -76680172 - MER5A DNA MER1_type -50 139 52 1 1140 576 205 73 16 chr6 72836992 72837116 -76679921 - B1_Mur2 SINE Alu -18 131 1 1 1140 439 317 8 16 chr6 72837016 72837138 -76679899 - B4 SINE B4 -108 184 64 1 1140 191 298 0 0 chr6 72837164 72837211 -76679826 - MER5A DNA MER1_type -142 47 1 1 1140 530 91 182 0 chr6 72837234 72837322 -76679715 + B1_Mur4 SINE Alu 7 110 -40 1 1140 368 154 134 62 chr6 72837237 72837334 -76679703 + ID_B1 SINE B4 90 193 -31 1 1140 408 214 36 0 chr6 72837579 72837663 -76679374 + RSINE1 SINE B4 20 106 -59 1 1140 521 184 32 73 chr6 72837766 72837889 -76679148 + B1_Mur2 SINE Alu 32 149 0 1 1140 1132 103 37 89 chr6 72838083 72838274 -76678763 + B2_Mm2 SINE B2 1 181 -14 1 1140 232 316 25 12 chr6 72838333 72838413 -76678624 + ID4_ SINE ID 2 82 -1 1 1140 372 322 51 0 chr6 72838448 72838566 -76678471 + ID_B1 SINE B4 81 204 -20 1 1140 457 92 0 0 chr6 72838586 72838651 -76678386 - B3 SINE B2 0 216 152 1 1140 855 120 42 7 chr6 72838849 72838992 -76678045 + B1_Mus1 SINE Alu 1 148 0 1 1140 272 346 46 9 chr6 72839013 72839121 -76677916 + B1F1 SINE Alu 26 137 -12 1 1140 409 197 13 13 chr6 72840540 72840617 -76676420 - B4A SINE B4 -213 79 3 1 1140 393 165 163 11 chr6 72840636 72840728 -76676309 + PB1D9 SINE Alu 12 117 -3 1 1140 322 295 54 0 chr6 72841984 72842096 -76674941 + PB1D7 SINE Alu 1 118 -2 1 1140 774 236 91 15 chr6 72842106 72842304 -76674733 + B3 SINE B2 4 216 0 1 1140 829 80 18 0 chr6 72842472 72842584 -76674453 - B1_Mus1 SINE Alu 0 148 35 1 1140 1316 57 9 138 chr6 72842605 72842637 -76674400 - B2_Mm2 SINE B2 0 195 165 1 1140 1022 61 15 8 chr6 72842637 72842769 -76674268 + B1_Mus1 SINE Alu 1 133 -15 1 1140 1316 57 9 138 chr6 72842769 72842960 -76674077 - B2_Mm2 SINE B2 -31 164 1 1 1140 302 238 37 12 chr6 72843018 72843099 -76673938 - PB1D10 SINE Alu 0 117 35 1 1140 247 292 97 34 chr6 72843321 72843434 -76673603 + B1F1 SINE Alu 1 147 -2 1 1140 665 237 0 62 chr6 72843751 72843895 -76673142 + ID_B1 SINE B4 84 218 -6 1 1140 282 378 0 0 chr6 72843905 72843987 -76673050 + ID4 SINE ID 2 83 0 1 1140 345 269 47 19 chr6 72844161 72844287 -76672750 + B1F1 SINE Alu 7 138 -12 1 1140 273 231 0 0 chr6 72844288 72844340 -76672697 + ID2 SINE ID 32 83 0 1 1140 553 247 46 11 chr6 72844416 72844595 -76672442 + ID_B1 SINE B4 2 218 -6 1 1140 360 231 47 28 chr6 72844811 72844918 -76672119 + PB1D7 SINE Alu 12 120 0 1 1140 258 311 53 52 chr6 72845615 72845744 -76671293 - PB1 SINE Alu -34 93 12 1 1140 227 328 13 155 chr6 72845660 72845815 -76671222 - ID_B1 SINE B4 -63 161 29 1 1140 619 270 105 0 chr6 72845819 72846019 -76671018 + ID_B1 SINE B4 3 223 -1 1 1140 988 234 114 29 chr6 72846485 72846793 -76670244 + MER58B DNA MER1_type 5 338 -3 1 1140 208 121 0 0 chr6 72847187 72847220 -76669817 + (G)n Simple_repeat Simple_repeat 1 33 0 1 1140 414 218 36 9 chr6 72847502 72847613 -76669424 + PB1D9 SINE Alu 6 119 -1 1 1140 32 43 0 0 chr6 72849226 72849272 -76667765 + GC_rich Low_complexity Low_complexity 1 46 0 1 1140 22 0 0 0 chr6 72849369 72849391 -76667646 + GC_rich Low_complexity Low_complexity 1 22 0 1 1140 24 77 0 0 chr6 72849499 72849551 -76667486 + GC_rich Low_complexity Low_complexity 1 52 0 1 1140 23 54 0 0 chr6 72849682 72849719 -76667318 + GC_rich Low_complexity Low_complexity 1 37 0 1 1140 242 29 29 0 chr6 72849777 72849812 -76667225 + (CGG)n Simple_repeat Simple_repeat 3 38 0 1 1140 22 35 0 0 chr6 72849871 72849900 -76667137 + GC_rich Low_complexity Low_complexity 1 29 0 1 1140 22 0 0 0 chr6 72849972 72849994 -76667043 + GC_rich Low_complexity Low_complexity 1 22 0 1 1140 249 83 0 0 chr6 72850018 72850054 -76666983 + (TCC)n Simple_repeat Simple_repeat 3 38 0 1 1140 21 89 0 0 chr6 72850055 72850111 -76666926 + GC_rich Low_complexity Low_complexity 1 56 0 1 1140 374 212 90 74 chr6 72850557 72850679 -76666358 + MIRb SINE MIR 4 127 -141 1 1140 319 246 188 18 chr6 72851088 72851200 -76665837 - ID_B1 SINE B4 -8 216 86 1 1140 388 121 0 0 chr6 72851788 72851846 -76665191 - B1_Mus1 SINE Alu -88 60 3 1 1140 653 169 93 29 chr6 72852204 72852344 -76664693 + B1_Mur2 SINE Alu 1 149 0 1 1140 189 0 0 0 chr6 72852344 72852365 -76664672 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1140 1343 80 21 0 chr6 72852389 72852576 -76664461 + B2_Mm1a SINE B2 2 192 -1 1 1140 245 303 15 0 chr6 72852790 72852856 -76664181 + B1F2 SINE Alu 3 69 -80 1 1140 453 272 68 0 chr6 72852919 72853022 -76664015 + B3 SINE B2 81 190 -26 1 1140 503 107 268 0 chr6 72853112 72853224 -76663813 + B1_Mur4 SINE Alu 9 150 0 1 1140 372 280 144 35 chr6 72853476 72853650 -76663387 + B3A SINE B2 2 194 -4 1 1140 202 94 18 70 chr6 72854100 72854145 -76662892 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 1 1140 1214 55 0 0 chr6 72854145 72854290 -76662747 - B1_Mus2 SINE Alu -2 145 1 1 1140 202 94 18 70 chr6 72854290 72854301 -76662736 + (TTTG)n Simple_repeat Simple_repeat 2 11 0 1 1140 504 219 28 28 chr6 72854439 72854547 -76662490 - B4A SINE B4 -14 278 171 1 1140 971 205 70 70 chr6 72854619 72854960 -76662077 + RLTR15 LTR ERVK 2 342 -17 1 1140 411 277 62 9 chr6 72855039 72855152 -76661885 + B3A SINE B2 1 119 -79 1 1140 474 348 54 11 chr6 72855175 72855361 -76661676 + B3A SINE B2 1 194 -4 1 1140 911 166 14 0 chr6 72855365 72855510 -76661527 + B1_Mur4 SINE Alu 1 147 -3 1 1140 189 0 0 0 chr6 72855531 72855552 -76661485 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1140 1193 54 0 20 chr6 72855552 72855702 -76661335 - B1_Mus2 SINE Alu 0 147 1 1 1140 401 264 145 35 chr6 72855728 72855928 -76661109 + ID_B1 SINE B4 2 223 -1 1 1140 981 240 190 53 chr6 72855934 72856219 -76660818 + Lx8 LINE L1 6898 7238 -235 1 1140 1670 31 0 0 chr6 72856219 72856411 -76660626 - B2_Mm1a SINE B2 -1 192 1 1 1140 981 240 190 53 chr6 72856411 72856631 -76660406 + Lx8 LINE L1 7239 7472 -1 1 1140 915 98 15 0 chr6 72856666 72856799 -76660238 + B2_Mm2 SINE B2 1 135 -60 1 1140 458 214 281 16 chr6 72856828 72856956 -76660081 + B3A SINE B2 1 162 -36 1 1140 504 228 63 24 chr6 72857126 72857252 -76659785 + ID_B1 SINE B4 86 216 -8 1 1140 4600 160 66 62 chr6 72857371 72858270 -76658767 + RMER19B LTR ERVK 1 902 0 1 1140 226 298 35 0 chr6 72858440 72858497 -76658540 + ID SINE ID 16 74 -150 1 1140 210 290 116 21 chr6 72858525 72858620 -76658417 + MIR SINE MIR 58 161 -101 1 1140 666 271 0 0 chr6 72858654 72858787 -76658250 - RSINE1 SINE B4 -2 163 31 1 1140 553 200 109 22 chr6 72858781 72858919 -76658118 + ID_B1 SINE B4 70 219 -5 1 1140 247 277 55 33 chr6 72858958 72859050 -76657987 + B1F1 SINE Alu 2 100 -20 1 1140 33 56 0 0 chr6 72859084 72859138 -76657899 + AT_rich Low_complexity Low_complexity 1 54 0 1 1140 276 263 35 0 chr6 72859165 72859222 -76657815 + ID4 SINE ID 2 60 -23 1 1140 951 175 26 42 chr6 72859284 72859475 -76657562 - RLTR20C LTR ERVK 0 534 347 1 1140 831 98 0 0 chr6 72859468 72859580 -76657457 - RLTR20C LTR ERVK -465 113 2 1 1140 790 167 65 7 chr6 72859665 72859804 -76657233 - B1F2 SINE Alu -1 148 2 1 1140 1350 97 16 11 chr6 72860032 72860220 -76656817 - B2_Mm2 SINE B2 -4 191 3 1 1140 203 316 29 48 chr6 72860356 72860459 -76656578 + MER5B DNA MER1_type 72 172 -6 1 1140 1327 86 5 5 chr6 72860836 72861023 -76656014 - B2_Mm1a SINE B2 -5 188 2 1 1140 328 270 56 11 chr6 72861125 72861215 -76655822 + RSINE1 SINE B4 3 96 -69 1 1140 1386 236 127 20 chr6 72861398 72861753 -76655284 - MTD LTR MaLR -14 405 13 1 1140 234 0 0 0 chr6 72861778 72861804 -76655233 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1 1140 307 152 31 16 chr6 72861813 72861940 -76655097 + A-rich Low_complexity Low_complexity 2 130 0 1 1140 248 250 54 0 chr6 72862103 72862159 -76654878 + B1F1 SINE Alu 48 106 -43 1 1140 414 125 97 0 chr6 72862162 72862234 -76654803 + RLTR20C LTR ERVK 1 79 -455 1 1140 510 46 0 0 chr6 72862310 72862375 -76654662 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1 1140 542 279 100 64 chr6 72862397 72862677 -76654360 - B4A SINE B4 0 292 3 1 1140 752 141 148 0 chr6 72862708 72862836 -76654201 - B1_Mur4 SINE Alu -1 149 3 1 1140 594 244 0 8 chr6 72862844 72862968 -76654069 - B1F2 SINE Alu -1 148 26 1 1140 1202 55 0 7 chr6 72863747 72863895 -76653142 + B1_Mus1 SINE Alu 1 147 -1 1 1140 429 104 0 0 chr6 72863898 72863975 -76653062 + (GA)n Simple_repeat Simple_repeat 1 77 0 1 1140 521 285 14 0 chr6 72864072 72864216 -76652821 - RSINE1 SINE B4 -19 146 1 1 1140 333 0 0 0 chr6 72864402 72864439 -76652598 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1140 189 107 0 0 chr6 72864439 72864467 -76652570 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1140 322 254 3 0 chr6 72864473 72864546 -76652491 - B3 SINE B2 -95 103 29 1 1140 516 194 67 10 chr6 72864548 72864652 -76652385 + B1_Mur1 SINE Alu 1 110 -39 1 1140 1218 76 58 0 chr6 72864753 72864924 -76652113 + B2_Mm1t SINE B2 11 191 -2 1 1140 999 67 0 15 chr6 72865168 72865305 -76651732 - B1_Mus2 SINE Alu 0 147 13 1 1140 336 154 92 0 chr6 72865773 72865838 -76651199 - ID4 SINE ID -11 72 2 1 1140 426 274 126 0 chr6 72865936 72866071 -76650966 + MIRb SINE MIR 109 260 -8 1 1140 795 246 16 27 chr6 72866126 72866314 -76650723 - ID_B1 SINE B4 -5 219 34 1 1140 198 0 0 0 chr6 72866874 72866896 -76650141 + (TGG)n Simple_repeat Simple_repeat 2 23 0 1 1140 1400 77 0 63 chr6 72866980 72867187 -76649850 - B2_Mm2 SINE B2 0 195 2 1 1140 1401 51 17 17 chr6 72867187 72867366 -76649671 - B2_Mm2 SINE B2 -16 179 1 1 1140 366 301 115 0 chr6 72867572 72867685 -76649352 + ID_B1 SINE B4 86 211 -13 1 1140 440 62 16 0 chr6 72868047 72868111 -76648926 + (TTTTC)n Simple_repeat Simple_repeat 3 67 0 1 1140 656 254 38 19 chr6 72868124 72868333 -76648704 - B3 SINE B2 0 216 4 1 1140 226 286 9 133 chr6 72868366 72868479 -76648558 - B1F2 SINE Alu -5 115 17 1 1140 217 365 133 13 chr6 72868479 72868522 -76648515 - B4 SINE B4 -69 221 47 1 1140 186 43 0 0 chr6 72868587 72868610 -76648427 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1140 377 296 0 0 chr6 72869074 72869155 -76647882 - ID SINE ID -143 81 1 1 1140 391 296 9 0 chr6 72869164 72869279 -76647758 - PB1D7 SINE Alu -4 116 1 1 1140 364 236 0 0 chr6 72869381 72869453 -76647584 + ID2 SINE ID 2 73 -10 1 1140 1243 41 0 7 chr6 72869453 72869601 -76647436 + B1_Mm SINE Alu 1 147 0 1 1140 333 0 0 0 chr6 72869707 72869744 -76647293 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1140 602 180 81 0 chr6 72870042 72870153 -76646884 + B3 SINE B2 1 120 -96 1 1140 192 77 0 0 chr6 72870192 72870218 -76646819 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1 1140 932 246 10 0 chr6 72870218 72870421 -76646616 - ID_B1 SINE B4 -12 212 8 1 1140 979 280 105 12 chr6 72870420 72870763 -76646274 - RMER5 LTR ERV1 -130 404 30 1 1140 232 221 14 42 chr6 72870906 72870977 -76646060 - ID4 SINE ID -13 70 2 1 1140 675 154 14 56 chr6 72871317 72871477 -76645560 + ORR1D1 LTR MaLR 1 146 -248 1 1140 1434 211 19 8 chr6 72871505 72871827 -76645210 + ORR1C2 LTR MaLR 41 383 -1 1 1140 223 292 0 0 chr6 72871827 72871875 -76645162 + ID4_ SINE ID 36 83 0 1 1140 1213 48 0 0 chr6 72871888 72872034 -76645003 + B1_Mus2 SINE Alu 2 147 0 1 1140 21 36 0 0 chr6 72872034 72872062 -76644975 + AT_rich Low_complexity Low_complexity 1 28 0 1 1140 328 212 35 70 chr6 72872074 72872113 -76644924 + ID SINE ID 1 36 -188 1 1140 210 235 114 34 chr6 72872113 72872201 -76644836 + B1_Mus2 SINE Alu 2 96 -51 1 1140 755 167 20 53 chr6 72872297 72872449 -76644588 + B1_Mus1 SINE Alu 1 147 -1 1 1140 219 213 72 12 chr6 72872651 72872817 -76644220 + (TA)n Simple_repeat Simple_repeat 1 176 0 1 1140 243 0 0 0 chr6 72872845 72872872 -76644165 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1 1140 1142 71 0 0 chr6 72872875 72873016 -76644021 - B1_Mus1 SINE Alu -6 142 2 1 1140 1264 127 11 0 chr6 72873019 72873208 -76643829 - B2_Mm1t SINE B2 -1 192 2 1 1140 1994 150 146 67 chr6 72873208 72874029 -76643008 - RMER19B LTR ERVK -16 886 1 1 1140 326 265 341 16 chr6 72874261 72874446 -76642591 - B4A SINE B4 -47 245 1 1 1140 779 220 0 20 chr6 72875014 72875189 -76641848 - B3 SINE B2 -31 164 3 1 1140 2183 104 6 12 chr6 72875215 72875537 -76641500 + ORR1A4 LTR MaLR 1 320 -9 1 1140 2031 109 85 3 chr6 72875541 72875872 -76641165 + ORR1A4-int LTR MaLR 1 358 -1605 1 1140 633 142 24 48 chr6 72875843 72875969 -76641068 - ORR1B1 LTR MaLR -231 163 41 1 142 518 295 57 17 chr6 72876007 72876183 -76640854 - ID_B1 SINE B4 0 224 42 1 1141 684 215 11 95 chr6 72876161 72876351 -76640686 + MTD LTR MaLR 81 254 -165 1 1141 359 78 0 0 chr6 72876342 72876393 -76640644 + B1_Mur4 SINE Alu 100 150 0 1 1141 746 168 0 44 chr6 72876389 72876526 -76640511 + RMER5 LTR ERV1 379 509 -25 1 1141 377 277 53 66 chr6 72877487 72877638 -76639399 - B1F SINE Alu 0 149 1 1 1141 583 272 54 7 chr6 72877722 72877870 -76639167 + B3A SINE B2 3 157 -41 1 1141 440 91 30 15 chr6 72877882 72877949 -76639088 - B1_Mur3 SINE Alu -2 147 80 1 1141 497 204 12 13 chr6 72878278 72878378 -76638659 - B1_Mur4 SINE Alu -21 96 3 1 1141 800 171 49 21 chr6 72878448 72878591 -76638446 - B1_Mur1 SINE Alu -1 148 2 1 1141 480 285 53 53 chr6 72878597 72878749 -76638288 - RSINE1 SINE B4 -10 155 4 1 1141 362 203 0 0 chr6 72878772 72878836 -76638201 - ID_B1 SINE B4 -5 219 156 1 1141 278 267 53 43 chr6 72878836 72878864 -76638173 - B1F1 SINE Alu -3 144 52 1 1141 595 234 9 0 chr6 72879475 72879586 -76637451 - ORR1D2 LTR MaLR -255 115 4 1 1141 307 222 0 31 chr6 72879588 72879653 -76637384 + B1F SINE Alu 86 148 -1 1 1141 2012 167 2 107 chr6 72879679 72880101 -76636936 - ORR1C1 LTR MaLR 0 378 1 1 1141 512 291 107 65 chr6 72880247 72880585 -76636452 - ORR1E LTR MaLR -5 354 3 1 1141 314 205 0 13 chr6 72880732 72880811 -76636226 + CT-rich Low_complexity Low_complexity 3 80 0 1 1141 715 216 7 36 chr6 72880811 72880950 -76636087 - B1_Mur4 SINE Alu 0 150 16 1 1141 954 249 27 50 chr6 72880988 72881374 -76635663 + MT2B LTR ERVL 62 540 -61 1 1141 235 181 28 0 chr6 72881374 72881446 -76635591 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1141 247 49 0 0 chr6 72881475 72881516 -76635521 + MT2B LTR ERVL 478 518 -15 1 1141 2317 78 14 69 chr6 72881684 72882030 -76635007 + ORR1A2 LTR MaLR 1 327 0 1 1141 942 96 0 0 chr6 72882056 72882191 -76634846 + (TTTC)n Simple_repeat Simple_repeat 2 136 0 1 1141 1206 50 0 0 chr6 72882194 72882335 -76634702 - B1_Mus1 SINE Alu -6 142 2 1 1141 637 309 7 0 chr6 72882365 72882517 -76634520 + RSINE1 SINE B4 12 164 -1 1 1141 575 234 0 59 chr6 72882557 72882675 -76634362 - PB1D9 SINE Alu -8 112 2 1 1141 1380 101 11 0 chr6 72882691 72882880 -76634157 - B2_Mm1t SINE B2 -2 191 1 1 1141 222 146 0 68 chr6 72882984 72883028 -76634009 + polypyrimidine Low_complexity Low_complexity 1 41 0 1 1141 2430 89 9 0 chr6 72883314 72883638 -76633399 - ORR1A2 LTR MaLR 0 327 1 1 1141 3536 74 5 0 chr6 72883975 72884420 -76632617 - LTRIS5 LTR ERV1 0 447 1 1 1141 1140 112 22 27 chr6 72884630 72884814 -76632223 - B2_Mm2 SINE B2 -11 184 2 1 1141 448 184 109 9 chr6 72884844 72884954 -76632083 + RLTR15 LTR ERVK 1 121 -238 1 1141 820 248 31 40 chr6 72885070 72885345 -76631692 - B4A SINE B4 -6 286 1 1 1141 1332 89 5 31 chr6 72885387 72885583 -76631454 - B2_Mm1a SINE B2 -2 191 1 1 1141 682 143 111 0 chr6 72885587 72885713 -76631324 - B1_Mur2 SINE Alu 0 149 10 1 1141 1028 238 23 138 chr6 72885760 72886006 -76631031 - MTD LTR MaLR 0 421 192 1 1141 1074 83 21 0 chr6 72886006 72886150 -76630887 - B1_Mus1 SINE Alu -1 147 1 1 1141 1028 236 23 139 chr6 72886150 72886247 -76630790 - MTD LTR MaLR -226 193 105 1 1141 947 102 159 18 chr6 72886247 72886417 -76630620 + B2_Mm2 SINE B2 2 195 0 1 1141 1028 248 21 132 chr6 72886417 72886505 -76630532 - MTD LTR MaLR -317 104 33 1 1141 779 10 21 0 chr6 72886901 72886998 -76630039 - B1_Mm SINE Alu -47 100 2 1 1141 221 217 0 32 chr6 72887252 72887314 -76629723 + CT-rich Low_complexity Low_complexity 2 61 0 1 1141 288 225 139 14 chr6 72887321 72887393 -76629644 - ID_B1 SINE B4 -41 183 103 1 1141 343 204 216 0 chr6 72887643 72887731 -76629306 - PB1D10 SINE Alu -9 108 2 1 1141 715 283 130 62 chr6 72888594 72888619 -76628418 + ID SINE ID 1 21 -271 1 1141 432 0 0 0 chr6 72888619 72888667 -76628370 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1141 715 253 116 43 chr6 72888667 72888871 -76628166 + ID_B1 SINE B4 21 244 -48 1 1141 510 207 0 0 chr6 72889160 72889247 -76627790 + B1_Mur2 SINE Alu 17 103 -46 1 1141 2176 96 142 25 chr6 72889600 72889953 -76627084 + ORR1B1 LTR MaLR 1 394 0 1 1141 677 267 15 0 chr6 72890220 72890355 -76626682 + RSINE1 SINE B4 3 139 -26 1 1141 259 262 16 0 chr6 72890423 72890484 -76626553 - B1_Mus2 SINE Alu -1 146 85 1 1141 616 278 12 31 chr6 72891155 72891315 -76625722 + ID_B1 SINE B4 57 213 -11 1 1141 229 167 0 67 chr6 72891398 72891443 -76625594 + B1F1 SINE Alu 66 107 -42 1 1141 414 0 0 0 chr6 72891464 72891510 -76625527 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1141 472 273 139 7 chr6 72891510 72891654 -76625383 + ID_B1 SINE B4 6 168 -56 1 1141 1611 112 55 273 chr6 72891658 72892152 -76624885 - ORR1B1 LTR MaLR -8 386 1 1 1141 4855 107 77 122 chr6 72892152 72893121 -76623916 - ORR1B1-int LTR MaLR 0 1963 1038 1 1141 734 32 11 0 chr6 72893121 72893214 -76623823 + (TTTTC)n Simple_repeat Simple_repeat 4 97 0 1 1141 228 67 0 0 chr6 72893251 72893281 -76623756 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 1141 1258 81 0 0 chr6 72893281 72893441 -76623596 - B2_Mm1t SINE B2 -33 160 1 1 1141 563 151 69 86 chr6 72893441 72893505 -76623532 - ORR1B1-int LTR MaLR -922 1041 976 1 1141 1115 89 0 20 chr6 72893505 72893654 -76623383 - B1_Mus2 SINE Alu -1 146 1 1 1141 563 151 69 86 chr6 72893654 72893705 -76623332 - ORR1B1-int LTR MaLR -988 975 928 1 1141 708 173 93 2 chr6 72893664 72893817 -76623220 + ORR1B1 LTR MaLR 177 386 -8 1 1141 453 292 131 7 chr6 72893821 72893966 -76623071 - ID_B1 SINE B4 -56 168 6 1 1141 279 0 0 0 chr6 72893966 72893997 -76623040 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1141 1601 172 21 232 chr6 72893997 72894095 -76622942 - ORR1B1-int LTR MaLR -1051 912 825 1 1141 1074 101 161 0 chr6 72894095 72894263 -76622774 - B2_Mm2 SINE B2 0 195 1 1 1141 1601 172 21 232 chr6 72894263 72894777 -76622260 - ORR1B1-int LTR MaLR -1139 824 429 1 1141 1065 219 21 30 chr6 72894774 72895009 -76622028 - ORR1B1-int LTR MaLR -1136 234 2 1 1141 1361 236 40 52 chr6 72895010 72895185 -76621852 - ORR1B1 LTR MaLR 0 370 210 1 1141 1299 69 17 11 chr6 72895185 72895362 -76621675 - B2_Mm2 SINE B2 -16 179 2 1 1141 1361 236 40 52 chr6 72895362 72895534 -76621503 - ORR1B1 LTR MaLR -161 209 27 1 1141 978 154 7 0 chr6 72895576 72895725 -76621312 + B1_Mur4 SINE Alu 1 150 0 1 1141 237 200 36 0 chr6 72895756 72895811 -76621226 + L1M LINE L1 5353 5409 -831 1 1141 234 215 246 0 chr6 72895856 72895921 -76621116 - ID4 SINE ID -2 81 1 1 1141 28 29 0 0 chr6 72896052 72896087 -76620950 + AT_rich Low_complexity Low_complexity 1 35 0 1 1141 21 57 0 0 chr6 72896197 72896232 -76620805 + AT_rich Low_complexity Low_complexity 1 35 0 1 1141 430 186 0 0 chr6 72896257 72896327 -76620710 - RSINE1 SINE B4 -14 151 82 1 1141 3367 93 30 73 chr6 72896327 72896861 -76620176 + RLTR1B LTR ERV1 2 512 0 1 1141 689 162 417 0 chr6 72896861 72897075 -76619962 + MMERGLN-int LTR ERV1 1 303 -7253 1 1141 648 256 79 19 chr6 72897098 72897313 -76619724 + MMERGLN-int LTR ERV1 381 608 -6948 1 1141 536 91 0 0 chr6 72897314 72897391 -76619646 + LTRIS2 LTR ERV1 249 325 -239 1 1141 832 47 9 0 chr6 72897390 72897497 -76619540 + LTRIS2 LTR ERV1 457 564 0 1 1141 434 227 0 76 chr6 72897497 72897582 -76619455 - RSINE1 SINE B4 -87 78 3 1 1141 519 82 0 0 chr6 72897656 72897729 -76619308 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 1 1141 743 291 151 60 chr6 72898505 72898647 -76618390 - MLT2B3 LTR ERVL -115 602 396 1 1141 2380 98 3 21 chr6 72898647 72898980 -76618057 - ORR1A2 LTR MaLR 0 327 1 1 1141 743 286 149 69 chr6 72898980 72899259 -76617778 - MLT2B3 LTR ERVL -275 395 120 1 1141 250 299 0 0 chr6 72899277 72899376 -76617661 - L1M5 LINE L1 -2537 3609 3511 1 1141 426 292 266 0 chr6 72899463 72899617 -76617420 - ID_B1 SINE B4 -26 198 4 1 1141 423 285 37 30 chr6 72899689 72899823 -76617214 + RSINE1 SINE B4 1 135 -30 1 1141 441 0 0 0 chr6 72899825 72899874 -76617163 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1141 485 259 29 71 chr6 72899911 72900081 -76616956 + RSINE1 SINE B4 3 165 0 1 1141 453 305 137 10 chr6 72900511 72900716 -76616321 + MLT2C1 LTR ERVL 15 245 -152 1 1141 692 253 126 0 chr6 72900718 72900892 -76616145 + ID_B1 SINE B4 2 197 -27 1 1141 306 0 0 0 chr6 72900901 72900935 -76616102 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1141 743 245 0 0 chr6 72900957 72901100 -76615937 + B1F SINE Alu 6 148 -1 1 1141 796 225 159 0 chr6 72901103 72901285 -76615752 + B3 SINE B2 1 211 -5 1 1141 231 65 0 0 chr6 72901366 72901397 -76615640 + MLT2C1 LTR ERVL 441 471 -88 1 1141 320 330 0 21 chr6 72901398 72901422 -76615615 - B3 SINE B2 -42 174 152 1 1141 288 0 0 0 chr6 72901422 72901454 -76615583 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1141 323 291 0 1 chr6 72901454 72901525 -76615512 - B3A SINE B2 -65 151 81 1 1141 644 248 87 0 chr6 72901580 72901729 -76615308 - RSINE1 SINE B4 0 165 4 1 1141 195 42 0 0 chr6 72901894 72901918 -76615119 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1141 349 300 4 88 chr6 72901957 72902126 -76614911 - B4A SINE B4 -2 290 132 1 1141 531 223 47 47 chr6 72902711 72902838 -76614199 - ID_B1 SINE B4 -4 220 94 1 1141 1017 270 133 13 chr6 72902925 72903240 -76613797 - ORR1E LTR MaLR 0 359 7 1 1141 361 338 20 20 chr6 72903386 72903532 -76613505 + MLT1I LTR MaLR 223 368 -43 1 1141 2028 140 94 98 chr6 72903532 72904031 -76613006 - RLTR28 LTR ERVL 0 524 28 1 1141 1274 206 12 31 chr6 72904056 72904311 -76612726 - MTD LTR MaLR -13 406 157 1 1141 508 288 89 35 chr6 72904254 72904423 -76612614 + B3 SINE B2 36 213 -3 1 1141 309 109 0 0 chr6 72904424 72904470 -76612567 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1141 447 271 171 0 chr6 72904480 72904609 -76612428 + B4A SINE B4 16 166 -126 1 1141 351 308 9 19 chr6 72904652 72904758 -76612279 + B4 SINE B4 3 107 -185 1 1141 687 253 44 9 chr6 72905336 72905529 -76611508 - ID_B1 SINE B4 0 292 81 1 1141 204 40 0 0 chr6 72907570 72907595 -76609442 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 1 1141 190 197 57 136 chr6 72909001 72909089 -76607948 - L3 LINE CR1 -3485 1004 924 1 1141 700 199 107 0 chr6 72909398 72909529 -76607508 + B3 SINE B2 72 216 0 1 1141 448 266 55 41 chr6 72909599 72909744 -76607293 - B1_Mur2 SINE Alu -2 147 1 1 1141 507 333 58 6 chr6 72909800 72909972 -76607065 - MLT1J2 LTR MaLR -196 252 72 1 1141 834 245 49 5 chr6 72910373 72910578 -76606459 + ID_B1 SINE B4 2 215 -9 1 1141 349 313 75 18 chr6 72910674 72910871 -76606166 + MLT1H1 LTR MaLR 80 313 -282 1 1141 304 344 107 0 chr6 72910875 72910997 -76606040 + MLT1H1 LTR MaLR 445 579 0 1 1141 707 249 113 10 chr6 72911467 72911670 -76605367 - ID_B1 SINE B4 0 224 1 1 1141 881 239 72 0 chr6 72911871 72912080 -76604957 - ID_B1 SINE B4 0 224 1 1 1141 243 270 65 98 chr6 72912384 72912507 -76604530 + L3 LINE CR1 4291 4409 -80 1 1141 613 303 50 35 chr6 72912709 72912911 -76604126 + MTE2b LTR MaLR 1 205 -174 1 1141 557 297 77 6 chr6 72912936 72913119 -76603918 - B3A SINE B2 -1 197 2 1 1141 402 21 0 0 chr6 72913155 72913202 -76603835 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1141 634 233 0 57 chr6 72913217 72913358 -76603679 - RSINE1 SINE B4 -29 136 4 1 1141 305 225 0 91 chr6 72913388 72913476 -76603561 - PB1D10 SINE Alu -7 110 31 1 1141 1284 75 9 109 chr6 72913590 72913756 -76603281 + B2_Mm1t SINE B2 1 160 -33 1 1141 1587 47 0 5 chr6 72913756 72913947 -76603090 - B2_Mm1t SINE B2 -3 190 1 1 1141 1284 75 9 109 chr6 72913947 72913991 -76603046 + B2_Mm1t SINE B2 161 190 -3 1 1141 21 0 0 0 chr6 72914172 72914193 -76602844 + AT_rich Low_complexity Low_complexity 1 21 0 1 1141 514 351 83 38 chr6 72914376 72914616 -76602421 + MLT1F2 LTR MaLR 210 460 -100 1 1141 242 258 76 0 chr6 72914783 72914849 -76602188 - ID2 SINE ID -11 72 2 1 1141 746 234 62 57 chr6 72914857 72915045 -76601992 + MTEb LTR MaLR 2 186 -193 1 1141 795 171 70 14 chr6 72915045 72915187 -76601850 + B1_Mur4 SINE Alu 1 150 0 1 1141 746 234 62 57 chr6 72915187 72915207 -76601830 + MTEb LTR MaLR 187 211 -168 1 1141 222 62 0 0 chr6 72915247 72915279 -76601758 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 1 1141 733 254 80 15 chr6 72915288 72915452 -76601585 + MTEb LTR MaLR 167 343 -36 1 1141 270 0 0 0 chr6 72915452 72915482 -76601555 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1141 733 254 80 15 chr6 72915482 72915517 -76601520 + MTEb LTR MaLR 344 378 -1 1 1141 603 220 0 0 chr6 72915561 72915693 -76601344 + L1MB4 LINE L1 6049 6180 0 1 1141 313 228 38 0 chr6 72915701 72915780 -76601257 + ID4_ SINE ID 2 83 0 1 1141 567 229 28 2 chr6 72915814 72915964 -76601073 + B3A SINE B2 34 188 -28 1 1141 555 217 0 0 chr6 72916032 72916184 -76600853 + (CAGAGA)n Simple_repeat Simple_repeat 1 152 0 1 1141 1385 94 10 20 chr6 72916531 72916691 -76600346 + B2_Mm2 SINE B2 1 160 -35 1 1141 432 0 0 0 chr6 72916691 72916739 -76600298 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1 1141 1385 94 10 20 chr6 72916739 72916774 -76600263 + B2_Mm2 SINE B2 161 194 -1 1 1141 184 224 102 0 chr6 72916890 72916939 -76600098 + L3 LINE CR1 124 177 -4312 1 1141 201 39 0 0 chr6 72916995 72917021 -76600016 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 1 1141 225 0 0 0 chr6 72917290 72917315 -76599722 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1141 811 306 105 30 chr6 72917448 72917916 -76599121 - L1MD2 LINE L1 -2 6357 5855 1 1141 1168 269 60 67 chr6 72917917 72918289 -76598748 - MTE2a LTR MaLR 0 421 38 1 1141 374 301 35 35 chr6 72918305 72918461 -76598576 - B3A SINE B2 -9 184 37 1 1141 1952 116 20 7 chr6 72918538 72918833 -76598204 - ORR1A2 LTR MaLR 0 327 29 1 1141 915 53 0 9 chr6 72918870 72918985 -76598052 - B2_Mm2 SINE B2 -81 114 1 1 1141 450 108 13 39 chr6 72918985 72919042 -76597995 - ORR1A2 LTR MaLR -272 55 1 1 1141 407 271 56 0 chr6 72919068 72919175 -76597862 - PB1D7 SINE Alu -6 114 2 1 1141 444 259 124 108 chr6 72919176 72919604 -76597433 - L1MD2 LINE L1 -542 5817 5383 1 1141 435 268 8 64 chr6 72919627 72919768 -76597269 + B1F1 SINE Alu 8 141 -8 1 1141 1025 203 9 43 chr6 72920053 72920285 -76596752 - URR1A DNA MER1_type -2 224 1 1 1141 450 65 0 0 chr6 72920386 72920448 -76596589 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1141 189 0 0 0 chr6 72920448 72920468 -76596569 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1141 265 343 14 0 chr6 72920474 72920544 -76596493 + MLT1G3 LTR MaLR 445 515 -80 1 1141 513 115 0 0 chr6 72920663 72920741 -76596296 + (TC)n Simple_repeat Simple_repeat 1 78 0 1 1141 3297 46 8 0 chr6 72920793 72921186 -76595851 + MTA_Mm LTR MaLR 1 396 0 1 1141 390 91 0 0 chr6 72921529 72921584 -76595453 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1141 546 180 0 126 chr6 72921643 72921770 -76595267 + B1_Mur1 SINE Alu 2 112 -37 1 1141 274 377 39 0 chr6 72921770 72921900 -76595137 - RSINE1 SINE B4 -6 159 25 1 1141 485 229 9 19 chr6 72922109 72922216 -76594821 - PB1D10 SINE Alu -3 114 9 1 1141 379 250 33 0 chr6 72922134 72922226 -76594811 - ID_B1 SINE B4 -52 172 78 1 1141 222 149 21 0 chr6 72922257 72922304 -76594733 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1141 304 284 52 60 chr6 72922751 72922867 -76594170 - PB1D10 SINE Alu 0 117 3 1 1141 375 23 0 0 chr6 72922909 72922953 -76594084 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1141 576 274 14 62 chr6 72922956 72923100 -76593937 - RSINE1 SINE B4 -21 144 8 1 1141 1226 61 0 0 chr6 72923116 72923263 -76593774 - B1_Mus2 SINE Alu 0 147 1 1 1141 1361 60 42 37 chr6 72923276 72923466 -76593571 - B2_Mm2 SINE B2 -4 191 1 1 1141 524 284 60 13 chr6 72923480 72923630 -76593407 + ID_B1 SINE B4 60 216 -8 1 1141 251 300 98 91 chr6 72923632 72923764 -76593273 - MIR SINE MIR -104 158 26 1 1141 21 0 0 0 chr6 72923830 72923851 -76593186 + AT_rich Low_complexity Low_complexity 1 21 0 1 1141 516 244 79 11 chr6 72923871 72924049 -76592988 - Zaphod DNA Tip100 -5 4026 3837 1 1141 709 253 7 0 chr6 72924035 72924181 -76592856 - B1_Mur2 SINE Alu -2 147 1 1 1141 393 278 27 20 chr6 72924203 72924350 -76592687 - Zaphod DNA Tip100 -186 3845 3698 1 1141 22 35 0 0 chr6 72924356 72924385 -76592652 + AT_rich Low_complexity Low_complexity 1 29 0 1 1141 1207 315 63 19 chr6 72924401 72924424 -76592613 - Lx8 LINE L1 -24 7449 7426 1 1141 2626 166 98 13 chr6 72924424 72924963 -76592074 + RMER4B LTR ERVK 1 585 0 1 1141 1207 315 63 19 chr6 72924963 72925466 -76591571 - Lx8 LINE L1 -48 7425 6900 1 1141 1532 206 87 17 chr6 72925479 72925824 -76591213 + ORR1D1 LTR MaLR 1 369 -5 1 1141 325 277 80 48 chr6 72925831 72925956 -76591081 - Lx8 LINE L1 -589 6884 6756 1 1141 1393 203 89 17 chr6 72925967 72925979 -76591058 - MTD LTR MaLR 0 419 408 1 1141 1992 182 43 8 chr6 72925979 72926350 -76590687 - ORR1C2 LTR MaLR 0 384 1 1 1141 1393 205 89 22 chr6 72926350 72926670 -76590367 - MTD LTR MaLR -12 409 78 1 1141 1056 184 100 9 chr6 72926627 72926857 -76590180 + MT2B LTR ERVL 346 596 -5 1 1141 364 250 0 12 chr6 72926858 72926939 -76590098 - ID2 SINE ID -1 82 3 1 1141 347 223 141 98 chr6 72927437 72927621 -76589416 + B2_Mm2 SINE B2 3 194 -1 1 1141 949 100 7 14 chr6 72928387 72928529 -76588508 - B1_Mur4 SINE Alu 0 150 10 1 1141 618 131 0 0 chr6 72928531 72928630 -76588407 + (GAGAA)n Simple_repeat Simple_repeat 2 100 0 1 1141 646 179 9 0 chr6 72928630 72928742 -76588295 - MTD LTR MaLR -299 120 8 1 1141 1887 286 48 14 chr6 72928750 72929374 -76587663 - Lx8 LINE L1 -723 6750 6106 1 1141 733 258 53 16 chr6 72929604 72929793 -76587244 + MER82 DNA MER2_type 9 204 -449 1 1141 271 314 43 65 chr6 72929780 72929793 -76587244 - YREP_Mm Unknown Unknown -1485 327 291 1 1141 582 272 32 0 chr6 72929793 72929918 -76587119 + ID_B1 SINE B4 82 210 -14 1 1141 271 314 43 65 chr6 72929918 72929964 -76587073 - YREP_Mm Unknown Unknown -1485 290 148 1 1141 310 254 12 193 chr6 72929997 72930091 -76586946 + B1F SINE Alu 2 72 -77 1 1141 2662 101 11 8 chr6 72930091 72930470 -76586567 - RLTR14 LTR ERV1 0 382 3 1 1141 310 233 4 96 chr6 72930470 72930553 -76586484 + B1F SINE Alu 73 140 -9 1 1141 306 305 0 0 chr6 72930559 72930641 -76586396 + ID4_ SINE ID 1 82 -1 1 1141 537 286 153 9 chr6 72930801 72930918 -76586119 - Zaphod DNA Tip100 -3153 878 728 1 1141 570 278 0 7 chr6 72930918 72931063 -76585974 - B1F SINE Alu -5 144 1 1 1141 537 286 153 9 chr6 72931063 72931266 -76585771 - Zaphod DNA Tip100 -3304 727 513 1 1141 1267 216 106 65 chr6 72931891 72932232 -76584805 - MTEa LTR MaLR -14 365 11 1 1141 1183 68 0 0 chr6 72933139 72933286 -76583751 + B1_Mus2 SINE Alu 1 147 0 1 1141 418 131 0 48 chr6 72933286 72933390 -76583647 + A-rich Low_complexity Low_complexity 2 100 0 1 1141 275 322 57 73 chr6 72933392 72933516 -76583521 + MIRc SINE MIR 44 168 -108 1 1141 974 234 36 59 chr6 72933530 72933888 -76583149 + RLTR15 LTR ERVK 1 350 -9 1 1141 26 74 0 0 chr6 72933915 72933969 -76583068 + AT_rich Low_complexity Low_complexity 1 54 0 1 1141 262 200 0 0 chr6 72934032 72934082 -76582955 - B3A SINE B2 -143 55 6 1 1141 234 0 0 0 chr6 72934092 72934118 -76582919 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1141 258 56 0 0 chr6 72934118 72934154 -76582883 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1141 698 243 79 0 chr6 72934160 72934312 -76582725 - B3 SINE B2 -52 164 1 1 1141 196 143 18 18 chr6 72934642 72934699 -76582338 + G-rich Low_complexity Low_complexity 3 59 0 1 1141 1782 186 141 3 chr6 72934730 72935092 -76581945 - MTD LTR MaLR 0 419 8 1 1141 693 253 48 27 chr6 72935102 72935289 -76581748 + B4A SINE B4 31 221 -71 1 1141 249 33 0 0 chr6 72935292 72935322 -76581715 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1 1141 633 256 0 0 chr6 72935325 72935446 -76581591 + RSINE1 SINE B4 9 129 -36 1 1141 1087 58 26 0 chr6 72935464 72935618 -76581419 + (GGGGA)n Simple_repeat Simple_repeat 2 159 0 1 1141 762 124 20 0 chr6 72935634 72935787 -76581250 + (GA)n Simple_repeat Simple_repeat 1 156 0 1 1141 405 0 0 0 chr6 72936393 72936438 -76580599 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1141 342 0 0 0 chr6 72936438 72936475 -76580562 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1141 996 233 74 16 chr6 72936510 72936767 -76580270 - B4 SINE B4 -16 276 5 1 1141 978 211 0 11 chr6 72936792 72936969 -76580068 - B3 SINE B2 -3 213 39 1 1141 994 286 25 45 chr6 72936968 72937289 -76579748 - MTE2a LTR MaLR -43 376 58 1 1141 201 39 0 0 chr6 72937316 72937342 -76579695 + (TA)n Simple_repeat Simple_repeat 1 26 0 1 1141 392 253 126 0 chr6 72937342 72937437 -76579600 + Lx7 LINE L1 7225 7331 -365 1 1141 248 208 14 14 chr6 72937882 72937955 -76579082 + Lx7 LINE L1 7606 7678 -18 1 1141 943 171 11 23 chr6 72938034 72938208 -76578829 + URR1B DNA MER1_type 47 218 -7 1 1141 563 197 43 0 chr6 72938405 72938434 -76578603 + B1_Mm SINE Alu 26 59 -88 1 1141 372 22 0 0 chr6 72938434 72938479 -76578558 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1141 563 197 43 0 chr6 72938479 72938566 -76578471 + B1_Mm SINE Alu 60 146 -1 1 1141 376 244 24 31 chr6 72939362 72939489 -76577548 + CT-rich Low_complexity Low_complexity 1 126 0 1 1141 295 298 36 0 chr6 72939683 72939767 -76577270 + PB1D10 SINE Alu 2 88 -29 1 1141 946 293 27 3 chr6 72939772 72940070 -76576967 - Lx8 LINE L1 -349 7124 6820 1 1141 276 127 0 0 chr6 72940560 72940615 -76576422 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1141 243 61 0 0 chr6 72940870 72940903 -76576134 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1141 530 301 76 60 chr6 72940908 72941175 -76575862 - B4 SINE B4 -13 279 40 1 1141 1077 150 0 11 chr6 72941264 72941439 -76575598 - URR1B DNA MER1_type 0 225 53 1 1141 600 276 0 79 chr6 72941572 72941737 -76575300 - RSINE1 SINE B4 -13 152 1 1 1141 322 169 99 49 chr6 72941758 72941839 -76575198 - B1F SINE Alu 0 149 65 1 1141 314 125 0 69 chr6 72941838 72941905 -76575132 - B1F SINE Alu -22 127 65 1 1141 285 276 35 42 chr6 72941946 72942054 -76574983 - B1F SINE Alu -22 127 18 1 1141 320 288 12 12 chr6 72942056 72942137 -76574900 - Charlie1 DNA MER1_type -2694 87 7 1 1141 744 249 40 25 chr6 72942469 72942671 -76574366 + ID_B1 SINE B4 1 205 -19 1 1141 235 321 254 6 chr6 72942888 72943057 -76573980 + L2a LINE L2 3211 3421 -5 1 1141 181 234 0 78 chr6 72943147 72943198 -76573839 - L3 LINE CR1 -2806 1683 1637 1 1141 543 291 71 36 chr6 72943756 72943952 -76573085 - ID_B1 SINE B4 -21 203 1 1 1141 403 159 14 55 chr6 72943965 72944038 -76572999 - ID_B1 SINE B4 -6 218 149 1 1141 330 236 81 61 chr6 72944038 72944064 -76572973 - B1F SINE Alu -6 143 43 1 1141 534 132 0 71 chr6 72944107 72944205 -76572832 - B1_Mur4 SINE Alu 0 150 60 1 1141 356 226 9 92 chr6 72944264 72944413 -76572624 + B3A SINE B2 6 203 -13 1 1141 195 42 0 0 chr6 72944425 72944449 -76572588 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1141 471 286 18 0 chr6 72944717 72944829 -76572208 - PB1 SINE Alu -2 125 12 1 1141 795 234 0 0 chr6 72944928 72945073 -76571964 + RSINE1 SINE B4 3 147 -18 1 1141 213 175 0 0 chr6 72945097 72945137 -76571900 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 1141 381 336 92 24 chr6 72945353 72945688 -76571349 + L2 LINE L2 2031 2388 -1031 1 1141 999 109 14 7 chr6 72945708 72945855 -76571182 - B1_Mur4 SINE Alu -2 148 1 1 1141 344 312 38 30 chr6 72945902 72946034 -76571003 - B3 SINE B2 -78 138 6 1 1141 1106 89 7 0 chr6 72946310 72946456 -76570581 - B1_Mus1 SINE Alu 0 148 2 1 1141 25 51 0 0 chr6 72946527 72946566 -76570471 + AT_rich Low_complexity Low_complexity 1 39 0 1 1141 317 290 172 22 chr6 72946566 72946700 -76570337 - RSINE1 SINE B4 -9 156 3 1 1141 392 208 0 13 chr6 72947074 72947152 -76569885 + B3A SINE B2 59 135 -63 1 1141 423 0 0 0 chr6 72947161 72947208 -76569829 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1141 1004 60 82 7 chr6 72947279 72947414 -76569623 + B1_Mus1 SINE Alu 3 147 -1 1 1141 493 258 44 22 chr6 72947925 72948060 -76568977 - B4A SINE B4 -153 139 2 1 1141 580 339 59 8 chr6 72948148 72948401 -76568636 - MER82 DNA MER2_type -21 632 367 1 1141 411 283 0 50 chr6 72948395 72948514 -76568523 + MTD LTR MaLR 13 125 -296 1 1141 1472 74 16 0 chr6 72948519 72948708 -76568329 - B2_Mm2 SINE B2 -3 192 1 1 1141 463 194 20 59 chr6 72948708 72948850 -76568187 + MTD LTR MaLR 95 228 -172 1 1141 267 31 0 0 chr6 72948878 72948910 -76568127 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 1141 249 172 0 33 chr6 72948911 72948971 -76568066 + G-rich Low_complexity Low_complexity 4 61 0 1 1141 818 201 94 6 chr6 72948971 72949141 -76567896 + MTD LTR MaLR 221 405 -14 1 1141 405 153 0 0 chr6 72949145 72949217 -76567820 + (TATG)n Simple_repeat Simple_repeat 3 74 0 1 1141 706 245 85 15 chr6 72949217 72949416 -76567621 - ID_B1 SINE B4 -11 213 1 1 1141 323 257 115 0 chr6 72949437 72949550 -76567487 - MER82 DNA MER2_type -245 408 283 1 1141 567 299 0 19 chr6 72949592 72949752 -76567285 - MER82 DNA MER2_type -470 183 27 1 1141 2128 165 52 22 chr6 72949964 72950366 -76566671 + MTC LTR MaLR 5 418 -3 1 1141 405 0 0 0 chr6 72950906 72950951 -76566086 + (TTA)n Simple_repeat Simple_repeat 3 47 0 1 1141 425 257 244 35 chr6 72951562 72951820 -76565217 - Lx8 LINE L1 -18 7455 7144 1 1141 279 215 34 93 chr6 72951826 72951944 -76565093 + MER102c DNA MER1_type 201 311 -20 1 1141 592 261 42 0 chr6 72952009 72952128 -76564909 - ID_B1 SINE B4 -7 217 94 1 1141 27 0 0 0 chr6 72952838 72952865 -76564172 + AT_rich Low_complexity Low_complexity 1 27 0 1 1141 662 249 96 0 chr6 72952885 72953082 -76563955 - ID_B1 SINE B4 -8 216 1 1 1141 315 0 0 0 chr6 72953975 72954010 -76563027 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1141 241 226 116 23 chr6 72954224 72954271 -76562766 - B2_Mm2 SINE B2 -100 95 50 1 1141 5806 55 11 24 chr6 72954271 72955023 -76562014 + L1Md_F2 LINE L1 5840 6581 -1 1 1141 241 226 116 23 chr6 72955023 72955061 -76561976 - B2_Mm2 SINE B2 -146 49 3 1 1141 626 267 27 38 chr6 72955138 72955321 -76561716 - B3A SINE B2 0 216 36 1 1141 429 248 31 16 chr6 72955406 72955533 -76561504 - RSINE1 SINE B4 -8 157 29 1 1141 884 271 92 52 chr6 72955777 72956187 -76560850 + MTD LTR MaLR 6 377 -2 1 1141 5700 121 30 11 chr6 72956210 72957082 -76559955 + RMER12 LTR ERVK 1 888 -434 1 1141 387 0 0 0 chr6 72957082 72957125 -76559912 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1141 609 250 70 88 chr6 72957126 72957341 -76559696 + RMER12 LTR ERVK 989 1199 -123 1 1141 379 274 173 91 chr6 72957513 72957639 -76559398 + MLT1A1 LTR MaLR 1 155 -253 1 1141 814 246 68 0 chr6 72957639 72957846 -76559191 + ID_B1 SINE B4 1 221 -3 1 1141 379 274 173 91 chr6 72957846 72957916 -76559121 + MLT1A1 LTR MaLR 156 213 -195 1 1141 575 231 36 18 chr6 72958628 72958804 -76558233 + B4A SINE B4 1 181 -111 1 1141 705 221 0 8 chr6 72958935 72959067 -76557970 + B3A SINE B2 1 131 -67 1 1141 337 219 0 0 chr6 72959692 72959756 -76557281 - RCHARR1 DNA MER1_type -85 889 826 1 1141 878 157 14 14 chr6 72959765 72959907 -76557130 + B3A SINE B2 9 150 -48 1 1141 240 35 0 0 chr6 72959911 72959940 -76557097 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1141 229 196 68 51 chr6 72960403 72960462 -76556575 + RSINE1 SINE B4 19 78 -87 1 1141 703 232 7 40 chr6 72960742 72960825 -76556212 + B3A SINE B2 1 80 -118 1 1141 1908 78 155 28 chr6 72960825 72961115 -76555922 - ORR1A2 LTR MaLR 0 327 1 1 1141 703 232 7 40 chr6 72961115 72961179 -76555858 + B3A SINE B2 81 143 -55 1 1141 360 0 0 0 chr6 72961180 72961220 -76555817 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1141 2067 63 42 3 chr6 72961282 72961570 -76555467 + L1_Mus3 LINE L1 6337 6635 -3 1 1141 186 43 0 0 chr6 72961610 72961633 -76555404 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1141 764 154 7 0 chr6 72962060 72962368 -76554669 + (TG)n Simple_repeat Simple_repeat 1 310 0 1 1141 3096 44 10 5 chr6 72963393 72963785 -76553252 + MTB LTR MaLR 7 400 0 1 1141 294 95 0 0 chr6 72963913 72963955 -76553082 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 1 1141 568 276 113 22 chr6 72964035 72964220 -76552817 - B3 SINE B2 0 216 15 1 1141 1267 83 0 17 chr6 72965118 72965277 -76551760 + B2_Mm2 SINE B2 1 158 -37 1 1141 279 0 0 0 chr6 72965277 72965308 -76551729 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 1141 1267 83 0 17 chr6 72965308 72965320 -76551717 + B2_Mm2 SINE B2 159 169 -26 1 1141 547 196 0 11 chr6 72965363 72965456 -76551581 - PB1D10 SINE Alu 0 117 26 1 1141 2403 76 13 0 chr6 72965586 72965900 -76551137 - ORR1A2 LTR MaLR -9 318 1 1 1141 669 269 0 47 chr6 72966570 72966761 -76550276 - B3A SINE B2 -16 182 1 1 1141 438 226 32 11 chr6 72966812 72966906 -76550131 - RMER30 DNA MER1_type -3 199 104 1 1141 365 308 79 89 chr6 72966907 72967199 -76549838 + B4 SINE B4 2 290 -2 1 1141 404 274 15 46 chr6 72967204 72967334 -76549703 - RMER30 DNA MER1_type -65 137 12 1 1141 303 65 31 31 chr6 72967852 72967916 -76549121 + (TGGGGG)n Simple_repeat Simple_repeat 1 64 0 1 1141 469 211 21 64 chr6 72969073 72969214 -76547823 + B1_Mur1 SINE Alu 11 141 -8 1 1141 632 175 8 0 chr6 72969884 72970010 -76547027 + (TA)n Simple_repeat Simple_repeat 2 128 0 1 1141 25 0 0 0 chr6 72970330 72970355 -76546682 + AT_rich Low_complexity Low_complexity 1 25 0 1 1141 480 240 32 16 chr6 72970475 72970598 -76546439 - RSINE1 SINE B4 -38 127 3 1 1141 445 266 131 46 chr6 72970669 72970799 -76546238 - B1_Mur3 SINE Alu -7 142 2 1 1141 1023 216 14 14 chr6 72970857 72971073 -76545964 - B3 SINE B2 0 216 1 1 1141 239 349 44 44 chr6 72971927 72972062 -76544975 - MIRb SINE MIR -107 161 27 1 1141 651 185 83 8 chr6 72972590 72972710 -76544327 + RSINE1 SINE B4 1 129 -36 1 1141 189 0 0 0 chr6 72972732 72972753 -76544284 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 1 1141 932 230 5 25 chr6 72972930 72973111 -76543926 + B3A SINE B2 1 180 -18 1 1141 288 0 0 0 chr6 72973111 72973143 -76543894 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1141 932 230 5 25 chr6 72973143 72973162 -76543875 + B3A SINE B2 181 197 -1 1 1141 546 121 0 211 chr6 72973175 72973322 -76543715 + B1_Mur1 SINE Alu 34 149 0 1 1141 297 226 21 35 chr6 72973335 72973477 -76543560 + A-rich Low_complexity Low_complexity 1 140 0 1 1141 765 204 139 6 chr6 72973715 72973888 -76543149 + ID_B1 SINE B4 3 198 -26 1 1141 295 346 76 8 chr6 72973782 72973913 -76543124 + B1_Mur3 SINE Alu 5 144 -5 1 1141 436 281 73 157 chr6 72975120 72975407 -76541630 - B4 SINE B4 -29 263 1 1 1141 458 233 30 126 chr6 72975872 72976039 -76540998 - RSINE1 SINE B4 0 165 15 1 1141 447 19 0 0 chr6 72976149 72976201 -76540836 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1141 396 0 0 0 chr6 72976201 72976244 -76540793 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1141 606 233 8 0 chr6 72976525 72976654 -76540383 + RSINE1 SINE B4 2 131 -34 1 1141 374 259 270 6 chr6 72976969 72977128 -76539909 + MER3 DNA MER1_type 9 209 0 1 1141 250 269 0 0 chr6 72977089 72977141 -76539896 - MER3 DNA MER1_type -123 86 35 1 1141 213 39 0 0 chr6 72977714 72977740 -76539297 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1141 481 193 79 112 chr6 72977744 72977896 -76539141 - RSINE1 SINE B4 -16 149 3 1 1141 273 245 141 10 chr6 72977897 72977996 -76539041 - L1MB1 LINE L1 -38 6130 6019 1 1141 1449 6 0 27 chr6 72978294 72978479 -76538558 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1141 180 0 0 0 chr6 72978731 72978751 -76538286 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1141 1153 70 0 7 chr6 72978751 72978887 -76538150 - B1_Mus2 SINE Alu -10 137 2 1 1141 2510 101 0 0 chr6 72979174 72979501 -76537536 + ORR1A2 LTR MaLR 1 327 0 1 1141 405 304 115 24 chr6 72979538 72979703 -76537334 + MER34 LTR ERV1 11 190 -352 1 1141 918 122 36 0 chr6 72979752 72979891 -76537146 + B1_Mur2 SINE Alu 5 148 -1 1 1141 860 206 92 40 chr6 72979897 72980170 -76536867 + Lx9 LINE L1 7358 7644 0 1 1141 422 278 108 27 chr6 72980284 72980432 -76536605 + MER34 LTR ERV1 380 539 -3 1 1141 1158 203 35 0 chr6 72980738 72980940 -76536097 - B3 SINE B2 -7 209 1 1 1141 1407 150 5 0 chr6 72981737 72981957 -76535080 - URR1B DNA MER1_type -4 221 1 1 1141 480 35 0 0 chr6 72982172 72982230 -76534807 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1141 630 242 33 27 chr6 72982719 72982902 -76534135 - B3A SINE B2 -14 184 1 1 1141 510 234 122 41 chr6 72983816 72984012 -76533025 - B3 SINE B2 0 216 5 1 1141 967 216 63 14 chr6 72984564 72984785 -76532252 + B4A SINE B4 1 232 -60 1 1141 301 292 28 0 chr6 72984914 72984986 -76532051 + B4A SINE B4 217 290 -2 1 1141 237 246 15 15 chr6 72984988 72985054 -76531983 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1141 1283 272 57 82 chr6 72985824 72986213 -76530824 - MTE2a LTR MaLR 0 379 1 1 1141 238 406 10 0 chr6 72986887 72986988 -76530049 + ID_B1 SINE B4 81 182 -42 1 1141 468 0 0 0 chr6 72987439 72987491 -76529546 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1141 309 26 0 0 chr6 72987753 72987791 -76529246 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1141 345 47 0 0 chr6 72987791 72987834 -76529203 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1141 886 285 63 42 chr6 72987836 72988122 -76528915 - B4A SINE B4 0 292 1 1 1141 207 139 0 0 chr6 72988877 72988913 -76528124 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1141 989 113 0 7 chr6 72989246 72989388 -76527649 - B1_Mur4 SINE Alu -5 145 5 1 1141 2569 101 77 41 chr6 72989399 72989842 -76527195 - RMER6B LTR ERVK -2 459 1 1 1141 712 239 37 0 chr6 72989891 72990054 -76526983 - Lx8 LINE L1 -153 7320 7152 1 1141 566 156 73 9 chr6 72990402 72990512 -76526525 - PB1D9 SINE Alu -1 119 3 1 1141 385 281 0 129 chr6 72990518 72990673 -76526364 - ID_B1 SINE B4 -13 211 77 1 1141 25 65 0 0 chr6 72991202 72991248 -76525789 + AT_rich Low_complexity Low_complexity 1 46 0 1 1141 556 329 35 0 chr6 72991279 72991422 -76525615 - RSINE1 SINE B4 0 165 18 1 1141 316 279 63 0 chr6 72991428 72991507 -76525530 - B1F SINE Alu -50 99 16 1 1141 697 385 65 19 chr6 72991514 72991943 -76525094 - L1M4 LINE L1 -1008 5998 5550 1 1141 312 261 51 51 chr6 72991958 72992075 -76524962 - L1MB5 LINE L1 -36 6138 6022 1 1141 319 294 52 147 chr6 72992081 72992109 -76524928 - MLT2B1 LTR ERVL -11 544 517 1 1141 254 106 0 21 chr6 72992109 72992157 -76524880 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1141 432 287 58 59 chr6 72992157 72992359 -76524678 - MLT2B1 LTR ERVL -41 526 336 1 1141 630 281 77 21 chr6 72992426 72992754 -76524283 - L1M4 LINE L1 -5070 1834 1506 1 1141 711 275 50 50 chr6 72993023 72993294 -76523743 - L1M4 LINE L1 -5347 1557 1286 1 1141 1025 115 14 0 chr6 72993294 72993442 -76523595 - B1_Mur4 SINE Alu 0 150 1 1 1141 711 275 50 50 chr6 72993442 72993549 -76523488 - L1M4 LINE L1 -5619 1285 1179 1 1141 816 261 126 47 chr6 72993605 72993882 -76523155 + MLT2B4 LTR ERVL 221 519 -37 1 1141 966 167 0 0 chr6 72993892 72994072 -76522965 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1141 196 186 17 17 chr6 72994570 72994630 -76522407 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 1 1141 327 294 6 139 chr6 72994999 72995165 -76521872 - B3A SINE B2 0 198 55 1 1141 257 100 20 0 chr6 72995165 72995215 -76521822 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1141 305 254 146 51 chr6 72995221 72995358 -76521679 - RSINE1 SINE B4 -13 152 3 1 1141 743 234 0 21 chr6 72995720 72995864 -76521173 - B1F2 SINE Alu -3 146 6 1 1141 761 249 5 34 chr6 72996242 72996446 -76520591 - B3A SINE B2 0 198 1 1 1141 180 0 0 0 chr6 72996787 72996807 -76520230 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1141 216 0 0 0 chr6 72996913 72996937 -76520100 + (TGG)n Simple_repeat Simple_repeat 1 24 0 1 1141 728 270 29 39 chr6 72996963 72997167 -76519870 + B3 SINE B2 9 210 -6 1 1141 889 134 28 0 chr6 72998102 72998244 -76518793 - B1_Mur4 SINE Alu 0 150 5 1 1141 180 220 97 48 chr6 72999141 72999203 -76517834 + L3 LINE CR1 3133 3197 -1292 1 1141 324 70 0 0 chr6 72999394 72999437 -76517600 + (CAAA)n Simple_repeat Simple_repeat 4 46 0 1 1141 27 0 0 0 chr6 72999571 72999598 -76517439 + AT_rich Low_complexity Low_complexity 1 27 0 1 1141 1087 205 34 5 chr6 72999718 72999924 -76517113 + B3 SINE B2 5 216 0 1 1141 393 214 0 82 chr6 73000170 73000184 -76516853 - B3A SINE B2 -6 192 182 1 1141 468 0 0 0 chr6 73000184 73000236 -76516801 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2 1141 393 214 0 82 chr6 73000236 73000318 -76516719 - B3A SINE B2 -17 181 104 1 1141 570 152 9 0 chr6 73000588 73000693 -76516344 + B1_Mur4 SINE Alu 42 147 -3 3 1141 348 24 0 0 chr6 73000705 73000746 -76516291 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1141 254 263 31 21 chr6 73000804 73000901 -76516136 - Lx8 LINE L1 -2 7471 7374 5 1141 736 206 19 54 chr6 73000908 73001113 -76515924 - B3A SINE B2 0 198 1 6 1141 263 250 39 26 chr6 73001859 73001937 -76515100 - MER20 DNA MER1_type -137 82 4 7 1141 265 343 9 18 chr6 73002199 73002309 -76514728 + B3A SINE B2 90 198 0 8 1141 261 295 126 29 chr6 73002317 73002523 -76514514 + L1M5 LINE L1 2350 2575 -3571 9 1141 776 278 77 4 chr6 73003043 73003289 -76513748 + B4A SINE B4 1 264 -28 1 1141 453 36 0 0 chr6 73003374 73003429 -76513608 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1141 455 328 112 8 chr6 73003922 73004171 -76512866 + B4A SINE B4 2 276 -16 1 1141 366 183 155 41 chr6 73004280 73004377 -76512660 + PB1D10 SINE Alu 10 117 0 1 1141 834 264 11 0 chr6 73004710 73004888 -76512149 + B3A SINE B2 2 181 -17 1 1141 1574 287 76 108 chr6 73005244 73006119 -76510918 - Tigger1 DNA MER2_type -1 2417 1614 1 1141 1261 119 16 0 chr6 73006119 73006304 -76510733 - B2_Mm1t SINE B2 -4 189 2 1 1141 1574 287 76 108 chr6 73006304 73006631 -76510406 - Tigger1 DNA MER2_type -805 1613 1255 1 1141 794 222 26 21 chr6 73006671 73006860 -76510177 - B3A SINE B2 -1 197 8 1 1141 34 42 0 0 chr6 73006919 73006967 -76510070 + AT_rich Low_complexity Low_complexity 1 48 0 1 142 1219 159 31 50 chr6 73006971 73007229 -76509808 - RLTR1 LTR ERV1 0 624 372 1 1142 510 330 253 6 chr6 73007341 73007534 -76509503 - Tigger1 DNA MER2_type -1811 607 374 1 1142 1038 228 5 0 chr6 73007534 73007740 -76509297 - B3 SINE B2 -5 211 5 2 1142 510 330 253 6 chr6 73007740 73008033 -76509004 - Tigger1 DNA MER2_type -2045 373 1 1 1142 537 16 0 0 chr6 73008288 73008350 -76508687 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2 1142 636 265 6 30 chr6 73008364 73008531 -76508506 - RSINE1 SINE B4 0 165 3 2 1142 695 169 35 42 chr6 73008646 73008788 -76508249 - B1_Mur2 SINE Alu -7 142 2 2 1142 255 152 0 0 chr6 73008790 73008836 -76508201 + (TTAA)n Simple_repeat Simple_repeat 1 46 0 2 1142 205 319 112 26 chr6 73008905 73009021 -76508016 + MIRb SINE MIR 3 128 -140 2 1142 661 274 21 36 chr6 73009059 73009252 -76507785 - B3A SINE B2 0 198 9 2 1142 342 259 25 51 chr6 73009419 73009537 -76507500 + MTEa LTR MaLR 1 115 -244 2 1142 841 27 9 0 chr6 73009555 73009665 -76507372 - B1_Mus1 SINE Alu 0 148 38 2 1142 255 95 0 0 chr6 73009668 73009710 -76507327 + MTEa LTR MaLR 100 141 -218 2 1142 453 254 80 78 chr6 73009798 73010004 -76507033 + MTEa LTR MaLR 141 372 -7 2 1142 350 223 45 113 chr6 73010989 73011143 -76505894 - B1F SINE Alu -7 142 2 2 1142 298 228 0 48 chr6 73011161 73011244 -76505793 - ID4_ SINE ID 0 83 5 3 1142 826 176 127 14 chr6 73011414 73011627 -76505410 + ORR1D1 LTR MaLR 138 374 0 3 1142 254 125 0 20 chr6 73011725 73011774 -76505263 + (TCTCCC)n Simple_repeat Simple_repeat 3 50 0 3 1142 288 0 0 0 chr6 73011815 73011847 -76505190 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3 1142 444 127 0 0 chr6 73011913 73011984 -76505053 - B3 SINE B2 -145 71 1 3 1142 442 241 27 0 chr6 73012028 73012140 -76504897 - B3 SINE B2 -30 186 72 3 1142 242 29 29 0 chr6 73012321 73012356 -76504681 + (CAA)n Simple_repeat Simple_repeat 2 37 0 3 1142 1387 176 62 30 chr6 73013966 73014271 -76502766 - Lx4B LINE L1 0 7058 6744 3 1142 205 205 0 0 chr6 73014283 73014322 -76502715 + T-rich Low_complexity Low_complexity 1 39 0 3 1142 199 0 31 31 chr6 73014844 73014876 -76502161 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1142 345 367 24 6 chr6 73014912 73015082 -76501955 - B4A SINE B4 -2 290 118 4 1142 1219 116 136 5 chr6 73015132 73015331 -76501706 - URR1A DNA MER1_type -1 225 1 4 1142 654 58 0 28 chr6 73016562 73016669 -76500368 + (GGA)n Simple_repeat Simple_repeat 1 104 0 4 1142 928 164 117 36 chr6 73016932 73017128 -76499909 - B3 SINE B2 -4 212 1 4 1142 232 282 28 0 chr6 73017156 73017227 -76499810 - B1_Mur3 SINE Alu -1 148 76 4 1142 234 0 0 0 chr6 73017231 73017257 -76499780 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1142 233 220 60 0 chr6 73017259 73017309 -76499728 - B1F1 SINE Alu -89 60 8 4 1142 186 103 0 0 chr6 73017606 73017635 -76499402 + (CCCCCA)n Simple_repeat Simple_repeat 3 31 0 4 1142 299 219 0 10 chr6 73017757 73017854 -76499183 + (TG)n Simple_repeat Simple_repeat 1 96 0 4 1142 806 212 68 38 chr6 73017878 73018113 -76498924 - B4 SINE B4 0 292 51 4 1142 411 275 27 27 chr6 73018115 73018261 -76498776 + RSINE1 SINE B4 2 147 -18 5 1142 409 314 8 0 chr6 73018736 73018854 -76498183 + RSINE1 SINE B4 3 121 -44 5 1142 404 225 34 116 chr6 73019172 73019318 -76497719 + B3A SINE B2 65 198 0 5 1142 184 264 56 19 chr6 73019727 73019781 -76497256 + MIR SINE MIR 16 71 -191 5 1142 284 120 20 0 chr6 73019937 73019987 -76497050 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1142 270 125 0 0 chr6 73020648 73020696 -76496341 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1142 296 305 19 0 chr6 73020921 73021026 -76496011 + RLTR40 LTR ERVK 1 107 -710 5 1142 455 262 0 0 chr6 73021034 73021141 -76495896 + B4A SINE B4 178 284 -8 5 1142 275 264 14 0 chr6 73021671 73021743 -76495294 + MIR SINE MIR 92 164 -98 5 1142 359 229 47 19 chr6 73022150 73022257 -76494780 + MTD LTR MaLR 1 110 -309 5 1142 518 205 8 6 chr6 73022330 73022447 -76494590 + MTD LTR MaLR 296 404 -15 5 1142 728 252 42 37 chr6 73022735 73022949 -76494088 + ID_B1 SINE B4 5 219 -5 5 1142 1699 120 78 90 chr6 73023755 73024112 -76492925 + ORR1B1 LTR MaLR 42 394 0 6 1142 909 124 6 12 chr6 73025055 73025184 -76491853 + (TATATG)n Simple_repeat Simple_repeat 1 129 0 6 1142 339 25 0 0 chr6 73025184 73025224 -76491813 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1142 909 124 6 12 chr6 73025224 73025257 -76491780 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 6 1142 528 300 21 7 chr6 73026294 73026435 -76490602 + B3A SINE B2 1 143 -55 6 1142 725 247 104 36 chr6 73026810 73027003 -76490034 + ID_B1 SINE B4 2 207 -17 6 1142 1998 122 6 97 chr6 73027068 73027430 -76489607 + ORR1A4 LTR MaLR 1 329 0 6 1142 9393 126 22 81 chr6 73027430 73029567 -76487470 + ORR1A4-int LTR MaLR 1 1792 0 6 1142 2090 134 25 0 chr6 73029567 73029888 -76487149 + ORR1A4 LTR MaLR 1 329 0 6 1142 273 322 146 43 chr6 73030117 73030285 -76486752 - Lx8 LINE L1 -8 7465 7302 6 1142 3516 28 2 0 chr6 73030285 73030680 -76486357 + MTA_Mm LTR MaLR 1 396 0 6 1142 9350 29 6 2 chr6 73030680 73031773 -76485264 + MTA_Mm-int LTR MaLR 1 1098 0 6 1142 3476 33 2 0 chr6 73031773 73032168 -76484869 + MTA_Mm LTR MaLR 1 396 0 6 1142 273 322 146 43 chr6 73032168 73032250 -76484787 - Lx8 LINE L1 -172 7301 7189 6 1142 432 0 0 0 chr6 73033404 73033452 -76483585 + (TATG)n Simple_repeat Simple_repeat 2 49 0 6 1142 264 100 0 0 chr6 73033452 73033491 -76483546 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 7 1142 653 95 0 0 chr6 73033491 73033586 -76483451 - B1_Mur3 SINE Alu -13 136 42 7 1142 22 0 0 0 chr6 73033630 73033652 -76483385 + AT_rich Low_complexity Low_complexity 1 22 0 7 1142 288 111 0 0 chr6 73033654 73033708 -76483329 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1142 456 19 0 0 chr6 73033708 73033760 -76483277 + (GA)n Simple_repeat Simple_repeat 1 53 0 7 1142 631 228 14 7 chr6 73033761 73033907 -76483130 - B3A SINE B2 -48 150 4 7 1142 619 213 77 14 chr6 73034019 73034162 -76482875 + Lx5 LINE L1 6872 7023 -27 7 1142 212 172 34 17 chr6 73034194 73034253 -76482784 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1142 403 232 48 39 chr6 73034921 73034933 -76482104 - AmnSINE1 SINE SINE -471 104 1 7 1142 593 154 0 0 chr6 73034933 73035024 -76482013 - 5S rRNA rRNA -30 91 1 7 1142 1227 231 104 15 chr6 73035651 73035977 -76481060 + MTEa LTR MaLR 1 355 -24 8 1142 237 83 0 0 chr6 73036228 73036264 -76480773 + (CAA)n Simple_repeat Simple_repeat 3 38 0 8 1142 326 325 24 8 chr6 73036948 73037072 -76479965 - ID_B1 SINE B4 -4 220 95 8 1142 239 279 29 0 chr6 73038184 73038252 -76478785 + L2 LINE L2 1224 1293 -2126 8 1142 364 229 73 37 chr6 73038292 73038401 -76478636 - PB1D7 SINE Alu -7 113 1 8 1142 511 225 69 8 chr6 73038806 73038936 -76478101 + RSINE1 SINE B4 3 140 -25 8 1142 978 219 15 5 chr6 73039101 73039307 -76477730 - B3 SINE B2 0 216 9 8 1142 990 260 13 79 chr6 73039865 73040182 -76476855 + MTE2a LTR MaLR 84 379 0 8 1142 318 266 10 41 chr6 73040218 73040316 -76476721 + PB1D10 SINE Alu 1 95 -22 8 1142 467 275 15 37 chr6 73040230 73040366 -76476671 + ID_B1 SINE B4 91 223 -1 8 1142 296 217 59 8 chr6 73040807 73040916 -76476121 + MTE2a LTR MaLR 1 107 -312 9 1142 872 231 58 42 chr6 73040962 73041270 -76475767 + MTE2a LTR MaLR 58 370 -9 9 1142 402 21 0 0 chr6 73041548 73041595 -76475442 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1142 570 29 0 0 chr6 73041595 73041662 -76475375 + (GA)n Simple_repeat Simple_repeat 1 68 0 9 1142 202 216 0 0 chr6 73041891 73041942 -76475095 + A-rich Low_complexity Low_complexity 1 51 0 9 1142 967 270 80 59 chr6 73042385 73042775 -76474262 - MTD LTR MaLR -21 398 1 9 1142 1361 265 37 8 chr6 73043217 73043593 -76473444 + Lx8 LINE L1 7021 7407 -66 9 1142 370 226 78 10 chr6 73043890 73043993 -76473044 - RSINE1 SINE B4 -2 163 54 9 1142 217 231 0 0 chr6 73044077 73044116 -76472921 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1142 1168 229 32 109 chr6 73044272 73044683 -76472354 + MTE2a LTR MaLR 1 379 0 9 1142 306 0 0 0 chr6 73045465 73045499 -76471538 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 9 1142 447 19 0 0 chr6 73045499 73045551 -76471486 + (TTTTG)n Simple_repeat Simple_repeat 3 54 0 1 1142 1519 216 60 36 chr6 73045752 73046117 -76470920 + ORR1D1 LTR MaLR 1 374 0 1 1142 235 279 0 37 chr6 73046453 73046535 -76470502 + B3A SINE B2 1 79 -119 1 1142 555 189 0 83 chr6 73046471 73046549 -76470488 + RSINE1 SINE B4 18 94 -71 1 1142 2872 142 139 57 chr6 73046549 73047184 -76469853 + RMER6C LTR ERVK 1 687 -3 1 1142 555 189 0 83 chr6 73047184 73047226 -76469811 + RSINE1 SINE B4 95 128 -37 1 1142 225 0 0 0 chr6 73047226 73047251 -76469786 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1142 342 238 47 12 chr6 73048167 73048252 -76468785 - PB1D7 SINE Alu -9 111 24 1 1142 813 229 82 5 chr6 73049366 73049550 -76467487 + B3 SINE B2 6 203 -13 1 1142 722 215 172 92 chr6 73049650 73049795 -76467242 + B3A SINE B2 1 159 -36 1 1142 306 50 0 0 chr6 73049795 73049835 -76467202 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1142 431 215 172 92 chr6 73049835 73049863 -76467174 + B2_Mm2 SINE B2 160 188 -7 1 1142 333 0 0 0 chr6 73050718 73050755 -76466282 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1142 387 277 126 93 chr6 73050773 73050988 -76466049 - B4 SINE B4 -18 274 53 1 1142 1365 90 203 4 chr6 73050996 73051252 -76465785 + ORR1A2 LTR MaLR 19 325 -2 1 1142 331 140 18 0 chr6 73051252 73051307 -76465730 - B4 SINE B4 -232 60 5 1 1142 181 83 56 0 chr6 73051388 73051424 -76465613 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1 1142 343 281 69 63 chr6 73051473 73051648 -76465389 - Lx8 LINE L1 -10 7463 7288 1 1142 251 286 40 20 chr6 73051648 73051748 -76465289 - MER58A DNA MER1_type -122 102 1 1 1142 582 241 9 0 chr6 73052202 73052318 -76464719 - PB1D7 SINE Alu -1 119 3 1 1142 279 0 0 0 chr6 73052671 73052702 -76464335 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1142 1008 119 6 17 chr6 73053551 73053730 -76463307 + (TTTTC)n Simple_repeat Simple_repeat 3 179 0 1 1142 462 215 14 47 chr6 73053730 73054177 -76462860 + CT-rich Low_complexity Low_complexity 1 432 0 1 1142 922 175 0 0 chr6 73054177 73054320 -76462717 - B1_Mur2 SINE Alu -6 143 1 1 1142 336 48 0 0 chr6 73054586 73054628 -76462409 + (CTTA)n Simple_repeat Simple_repeat 2 43 0 1 1142 696 93 269 0 chr6 73054957 73055065 -76461972 + B1_Mm SINE Alu 2 138 -9 1 1142 288 77 0 0 chr6 73055065 73055104 -76461933 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1142 1073 243 92 71 chr6 73055169 73055537 -76461500 - MTE2b LTR MaLR -1 378 3 1 1142 5946 57 1 19 chr6 73055631 73056676 -76460361 + L1Md_A LINE L1 1 752 -5972 1 1142 39220 5 0 0 chr6 73056665 73062251 -76454786 + L1Md_A LINE L1 1 5586 -297 1 1142 9245 1 0 0 chr6 73062251 73063247 -76453790 + L1Md_A LINE L1 5587 6582 0 1 1142 1221 61 0 0 chr6 73064789 73064936 -76452101 - B1_Mm SINE Alu 0 147 1 1 1142 24 0 0 0 chr6 73065057 73065081 -76451956 + AT_rich Low_complexity Low_complexity 1 24 0 1 1142 1314 81 40 0 chr6 73065186 73065360 -76451677 - B2_Mm2 SINE B2 -14 181 1 1 1142 418 276 87 72 chr6 73065389 73065584 -76451453 + B3A SINE B2 1 198 0 1 1142 212 111 0 22 chr6 73065588 73065634 -76451403 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 1 1142 367 52 35 0 chr6 73065772 73065830 -76451207 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1142 191 219 193 68 chr6 73066545 73066633 -76450404 + L2c LINE L2 3229 3327 -60 1 1142 484 311 62 0 chr6 73066704 73066865 -76450172 + MLT1B LTR MaLR 3 173 -217 1 1142 312 217 79 67 chr6 73067114 73067203 -76449834 + RMER15 LTR ERVL 70 159 -416 1 1142 1167 212 20 99 chr6 73067202 73067325 -76449712 + RMER15 LTR ERVL 275 376 -199 1 1142 703 236 20 20 chr6 73067325 73067472 -76449565 - B1_Mur2 SINE Alu 0 149 3 1 1142 1167 212 20 99 chr6 73067472 73067651 -76449386 + RMER15 LTR ERVL 377 553 -22 1 1142 479 282 123 24 chr6 73067789 73067972 -76449065 + MLT1B LTR MaLR 190 370 -4 1 1142 231 221 40 105 chr6 73068239 73068315 -76448722 + MLT1A LTR MaLR 21 91 -283 1 1142 312 264 135 27 chr6 73068841 73068989 -76448048 + L1MC LINE L1 3038 3201 -2945 1 1142 216 0 0 0 chr6 73069006 73069030 -76448007 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1 1142 1180 239 124 40 chr6 73069927 73070275 -76446762 + MTEb LTR MaLR 1 377 -2 1 1142 21 0 0 0 chr6 73070980 73071001 -76446036 + AT_rich Low_complexity Low_complexity 1 21 0 1 1142 273 29 0 0 chr6 73071001 73071035 -76446002 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1142 426 20 0 0 chr6 73071035 73071085 -76445952 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1142 683 288 0 12 chr6 73071091 73071256 -76445781 - RSINE1 SINE B4 0 165 3 1 1142 261 57 0 0 chr6 73071626 73071661 -76445376 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1142 318 287 63 49 chr6 73072078 73072169 -76444868 - HAL1-3A_ME LINE L1 -738 2120 2029 1 1142 650 13 0 12 chr6 73072169 73072249 -76444788 + (GTGTG)n Simple_repeat Simple_repeat 1 79 0 1 1142 318 287 63 49 chr6 73072249 73072300 -76444737 - HAL1-3A_ME LINE L1 -830 2028 1977 1 1142 251 206 222 0 chr6 73072365 73072428 -76444609 - B4A SINE B4 -88 204 128 1 1142 312 91 0 0 chr6 73072489 73072533 -76444504 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1142 276 30 0 0 chr6 73072578 73072611 -76444426 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1142 297 0 0 0 chr6 73072716 73072749 -76444288 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1142 432 297 0 25 chr6 73072754 73072875 -76444162 + MER2 DNA MER2_type 207 324 -21 1 1142 312 326 150 17 chr6 73072919 73073153 -76443884 - L1MC4 LINE L1 -1417 6625 6361 1 1142 1246 42 0 0 chr6 73073329 73073473 -76443564 + B1_Mm SINE Alu 1 144 -3 1 1142 388 35 35 0 chr6 73073473 73073531 -76443506 + (CAAAAA)n Simple_repeat Simple_repeat 1 60 0 1 1142 542 307 79 0 chr6 73074389 73074529 -76442508 + RSINE1 SINE B4 1 151 -14 1 1142 441 0 0 0 chr6 73074532 73074581 -76442456 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1142 468 313 94 29 chr6 73075281 73075452 -76441585 + B3A SINE B2 1 182 -16 1 1142 240 143 0 0 chr6 73075456 73075498 -76441539 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1142 34 24 0 0 chr6 73075577 73075618 -76441419 + AT_rich Low_complexity Low_complexity 1 41 0 1 1142 350 279 36 67 chr6 73075618 73075841 -76441196 + L1MC LINE L1 4180 4395 -1751 1 1142 287 214 65 8 chr6 73075844 73075922 -76441115 + L1MC LINE L1 5086 5168 -978 1 1142 962 260 5 0 chr6 73075922 73076130 -76440907 + B3 SINE B2 1 209 -7 1 1142 228 246 36 214 chr6 73076130 73076191 -76440846 + L1MC LINE L1 5169 5200 -946 1 1142 198 0 0 0 chr6 73076430 73076452 -76440585 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1142 1616 317 70 32 chr6 73076456 73077338 -76439699 + L1MC2 LINE L1 5305 6220 -124 1 1142 463 125 0 0 chr6 73078060 73078124 -76438913 - B1_Mus2 SINE Alu -7 140 77 1 1142 514 175 46 12 chr6 73078276 73078449 -76438588 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 1 1142 280 100 0 0 chr6 73078449 73078489 -76438548 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1142 269 194 16 31 chr6 73078489 73078553 -76438484 - B1F2 SINE Alu -80 69 7 1 1142 277 215 0 44 chr6 73078496 73078564 -76438473 - ID_B1 SINE B4 -82 142 78 1 1142 197 83 28 0 chr6 73079859 73079895 -76437142 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1142 447 331 96 26 chr6 73080088 73080355 -76436682 - Lx8 LINE L1 -1446 6250 5967 1 1142 397 182 215 40 chr6 73080387 73080564 -76436473 + Lx8 LINE L1 7264 7471 -2 1 1142 1025 158 112 60 chr6 73080756 73080971 -76436066 + URR1A DNA MER1_type 1 226 0 1 1142 210 299 65 0 chr6 73081344 73081421 -76435616 + B4A SINE B4 66 147 -145 1 1142 506 216 0 0 chr6 73081368 73081465 -76435572 + PB1D10 SINE Alu 10 106 -11 1 1142 899 261 110 38 chr6 73081782 73082045 -76434992 + B4A SINE B4 11 292 0 1 1142 210 191 0 0 chr6 73082045 73082092 -76434945 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1142 237 328 40 56 chr6 73082875 73083001 -76434036 - RMER20B LTR ERVK -38 589 466 1 1142 402 21 0 0 chr6 73083184 73083231 -76433806 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1142 668 263 124 11 chr6 73084002 73084179 -76432858 - B3A SINE B2 0 198 2 1 1142 316 251 106 112 chr6 73084847 73084900 -76432137 - B2_Mm2 SINE B2 -5 190 135 1 1142 279 0 0 0 chr6 73084900 73084931 -76432106 + (TGAG)n Simple_repeat Simple_repeat 4 34 0 1 1142 316 251 106 112 chr6 73084931 73085065 -76431972 - B2_Mm2 SINE B2 -61 134 4 1 1142 231 152 0 21 chr6 73085293 73085340 -76431697 + CT-rich Low_complexity Low_complexity 2 47 0 1 1142 1173 206 33 80 chr6 73085345 73085645 -76431392 - B4 SINE B4 0 292 7 1 1142 422 284 74 95 chr6 73085947 73086095 -76430942 + MTEa LTR MaLR 227 371 -8 1 1142 285 98 0 0 chr6 73086394 73086435 -76430602 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1 1142 310 231 49 37 chr6 73086459 73086540 -76430497 - RSINE1 SINE B4 -74 91 10 1 1142 489 250 65 0 chr6 73087717 73087825 -76429212 - PB1D7 SINE Alu -5 115 1 1 1142 909 301 82 19 chr6 73088134 73088510 -76428527 + MTD LTR MaLR 18 417 -2 1 1142 303 140 0 0 chr6 73089253 73089303 -76427734 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1142 1124 282 30 79 chr6 73089516 73089885 -76427152 + ORR1E LTR MaLR 2 352 -7 1 1142 487 252 117 52 chr6 73090324 73090621 -76426416 + RMER13A LTR ERVK 186 454 -406 1 1142 243 0 0 0 chr6 73091396 73091423 -76425614 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1142 28 0 0 0 chr6 73091449 73091477 -76425560 + AT_rich Low_complexity Low_complexity 1 28 0 1 1142 914 196 52 0 chr6 73091481 73091675 -76425362 - U17 snRNA snRNA -3 204 1 1 1142 210 91 0 0 chr6 73092173 73092206 -76424831 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1142 894 189 73 24 chr6 73092860 73093066 -76423971 - B3 SINE B2 0 216 1 1 1142 227 294 98 67 chr6 73093255 73093419 -76423618 - MamRep1161 DNA TcMar -359 598 430 1 1142 668 250 0 63 chr6 73093532 73093707 -76423330 - B3A SINE B2 -7 191 28 1 1142 432 0 0 0 chr6 73093709 73093757 -76423280 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 2 1142 885 239 126 0 chr6 73094250 73094505 -76422532 - B4A SINE B4 -3 289 3 2 1142 183 268 53 53 chr6 73095136 73095211 -76421826 - MIRc SINE MIR -124 144 70 2 1142 501 196 93 0 chr6 73095298 73095395 -76421642 + B1_Mur1 SINE Alu 4 109 -40 2 1142 401 284 42 17 chr6 73095395 73095406 -76421631 + MT2B LTR ERVL 205 275 -326 2 1142 283 311 29 109 chr6 73095406 73095419 -76421618 + B4A SINE B4 108 201 -91 2 1142 183 42 0 0 chr6 73095420 73095444 -76421593 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1142 389 310 180 20 chr6 73095838 73096088 -76420949 - L1M3 LINE L1 -895 5245 4956 2 1142 290 121 121 0 chr6 73096082 73096148 -76420889 + L1M LINE L1 5304 5377 -803 2 1142 219 133 0 0 chr6 73096150 73096195 -76420842 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1142 1500 228 89 6 chr6 73096357 73096715 -76420322 - MTD LTR MaLR 0 419 32 2 1142 288 0 0 0 chr6 73096729 73096761 -76420276 + (CCAA)n Simple_repeat Simple_repeat 1 32 0 2 1142 673 318 122 53 chr6 73096771 73097296 -76419741 + Lx8 LINE L1 6912 7472 -1 2 1142 1154 255 180 54 chr6 73097303 73097913 -76419124 + L1MB1 LINE L1 5428 6114 -54 2 1142 1305 60 0 0 chr6 73097932 73098152 -76418885 + (TG)n Simple_repeat Simple_repeat 1 220 0 2 1142 501 289 35 70 chr6 73098187 73098388 -76418649 - B4A SINE B4 -14 278 85 2 1142 1460 224 75 11 chr6 73098439 73098787 -76418250 - ORR1D2 LTR MaLR 0 370 1 2 1142 3926 164 60 28 chr6 73099883 73100666 -76416371 + RMER13B LTR ERVK 1 808 -100 2 1142 261 221 0 0 chr6 73100890 73100958 -76416079 + (TATG)n Simple_repeat Simple_repeat 4 71 0 2 1142 181 222 136 45 chr6 73101308 73101374 -76415663 + L2c LINE L2 3274 3345 -42 2 1142 391 314 51 74 chr6 73103000 73103296 -76413741 - B4A SINE B4 -2 290 2 2 1142 747 180 253 11 chr6 73103473 73103647 -76413390 - B3 SINE B2 0 216 1 2 1142 191 320 51 39 chr6 73103715 73103793 -76413244 + L2c LINE L2 3272 3350 -37 2 1142 360 192 17 103 chr6 73104098 73104214 -76412823 - RLTR21 LTR ERVK -295 1277 1172 2 1142 327 49 0 0 chr6 73104215 73104256 -76412781 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1142 187 253 12 96 chr6 73104322 73104405 -76412632 + L2a LINE L2 3206 3281 -145 2 1142 615 167 51 26 chr6 73104998 73105115 -76411922 - B1_Mur4 SINE Alu -28 122 3 2 1142 229 256 57 23 chr6 73105852 73105940 -76411097 + MLT1F2 LTR MaLR 412 502 -58 2 1142 300 284 0 0 chr6 73106187 73106261 -76410776 - ID4 SINE ID -9 74 1 2 1142 234 0 0 0 chr6 73106672 73106698 -76410339 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1142 681 276 78 48 chr6 73106766 73107036 -76410001 - B4 SINE B4 -14 278 1 2 1142 342 0 0 0 chr6 73107734 73107772 -76409265 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1142 622 257 15 0 chr6 73107965 73108101 -76408936 - B1F SINE Alu -8 141 4 2 1142 180 0 0 0 chr6 73108611 73108631 -76408406 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 1142 435 312 71 61 chr6 73108861 73109073 -76407964 - B4 SINE B4 -1 291 78 2 1142 759 264 141 16 chr6 73109339 73109643 -76407394 + Lx8 LINE L1 7105 7446 -27 2 1142 314 316 76 72 chr6 73109952 73110426 -76406611 + L1MCc LINE L1 1034 1509 -4914 2 1142 180 0 0 0 chr6 73111010 73111030 -76406007 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1142 3777 203 56 102 chr6 73111193 73112153 -76404884 + RMER1A Other Other 47 865 -165 2 1142 219 69 0 0 chr6 73112153 73112182 -76404855 + (TTCTG)n Simple_repeat Simple_repeat 4 32 0 2 1142 3711 198 59 102 chr6 73112182 73112327 -76404710 + RMER1A Other Other 866 1020 -10 2 1142 665 227 50 75 chr6 73114100 73114300 -76402737 - B3A SINE B2 -3 195 1 2 1142 816 152 67 1 chr6 73114426 73114587 -76402450 + ORR1B2 LTR MaLR 1 183 -191 2 1142 570 111 46 0 chr6 73114589 73114697 -76402340 + C-rich Low_complexity Low_complexity 4 116 0 2 1142 735 12 0 0 chr6 73114697 73114781 -76402256 + (TTC)n Simple_repeat Simple_repeat 3 86 0 2 1142 360 0 0 0 chr6 73114781 73114821 -76402216 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1142 1277 95 5 15 chr6 73114821 73115024 -76402013 + ORR1B2 LTR MaLR 156 356 -11 2 1142 297 0 0 0 chr6 73115208 73115241 -76401796 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1142 351 222 197 67 chr6 73115322 73115530 -76401507 - B4A SINE B4 -16 276 42 2 1142 339 269 186 36 chr6 73115583 73115830 -76401207 - L1MB1 LINE L1 -4 6164 5881 2 1142 565 298 31 71 chr6 73115989 73116182 -76400855 - B4 SINE B4 -75 217 35 2 1142 261 0 0 0 chr6 73116182 73116211 -76400826 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1142 565 298 31 71 chr6 73116211 73116241 -76400796 - B4 SINE B4 -258 34 4 2 1142 700 209 103 43 chr6 73116274 73116459 -76400578 - B3A SINE B2 0 198 3 2 1142 1872 319 79 29 chr6 73116557 73117757 -76399280 - Lx8 LINE L1 -1711 5985 4709 2 1142 657 297 63 39 chr6 73118389 73118673 -76398364 - B4A SINE B4 0 292 2 2 1142 442 284 26 51 chr6 73119175 73119331 -76397706 + RSINE1 SINE B4 2 153 -12 2 1142 882 304 140 10 chr6 73119658 73120066 -76396971 - MER21B LTR ERV1 -129 734 274 2 1142 468 0 0 0 chr6 73120215 73120267 -76396770 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1142 1737 184 35 29 chr6 73120563 73120937 -76396100 + ORR1C2 LTR MaLR 1 376 -8 2 1142 299 271 125 0 chr6 73121894 73122042 -76394995 + MIR SINE MIR 33 204 -64 2 1142 299 255 90 9 chr6 73123086 73123197 -76393840 + L1MA7 LINE L1 6108 6227 -64 2 1142 612 0 0 0 chr6 73123803 73123871 -76393166 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1142 825 20 0 0 chr6 73124078 73124177 -76392860 + (TG)n Simple_repeat Simple_repeat 2 100 0 2 1142 544 195 155 8 chr6 73124178 73124307 -76392730 - B3A SINE B2 -50 148 1 2 1142 1008 91 11 22 chr6 73125510 73125690 -76391347 + (TTCTC)n Simple_repeat Simple_repeat 1 178 0 2 1142 217 91 44 22 chr6 73125690 73125735 -76391302 + CT-rich Low_complexity Low_complexity 4 49 0 2 1142 814 114 16 38 chr6 73125735 73125797 -76391240 + polypyrimidine Low_complexity Low_complexity 122 179 0 2 1142 979 104 23 6 chr6 73125797 73125971 -76391066 + (TTCTC)n Simple_repeat Simple_repeat 3 179 0 2 1142 814 114 16 38 chr6 73125971 73126091 -76390946 + polypyrimidine Low_complexity Low_complexity 1 121 0 2 1142 243 188 39 29 chr6 73126091 73126195 -76390842 + CT-rich Low_complexity Low_complexity 3 107 0 2 1142 311 300 0 0 chr6 73126630 73126720 -76390317 + PB1D10 SINE Alu 26 115 -2 2 1142 6503 75 15 4 chr6 73126860 73128361 -76388676 - L1VL2 LINE L1 -1789 1826 308 2 1142 21 0 0 0 chr6 73129014 73129035 -76388002 + AT_rich Low_complexity Low_complexity 1 21 0 2 1142 374 275 0 0 chr6 73129383 73129474 -76387563 - B3 SINE B2 -14 202 112 2 1142 241 295 4 48 chr6 73129932 73130047 -76386990 + L1M2 LINE L1 5451 5565 -735 2 1142 434 297 46 67 chr6 73130138 73130376 -76386661 + L1_Mur3 LINE L1 5591 5823 -57 2 1142 323 221 0 11 chr6 73130842 73130929 -76386108 + GA-rich Low_complexity Low_complexity 1 86 0 2 1142 22 0 0 0 chr6 73131100 73131122 -76385915 + AT_rich Low_complexity Low_complexity 1 22 0 2 1142 518 0 16 0 chr6 73131875 73131937 -76385100 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1142 430 308 49 37 chr6 73131946 73132108 -76384929 - B3A SINE B2 -33 165 2 2 1142 294 16 62 31 chr6 73132132 73132197 -76384840 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1142 1488 218 99 3 chr6 73132381 73132753 -76384284 + MTD LTR MaLR 12 419 0 2 1142 245 217 16 32 chr6 73132758 73132820 -76384217 - L1MC4a LINE L1 -1405 6477 6417 2 1142 219 244 0 0 chr6 73132936 73132981 -76384056 + (ATG)n Simple_repeat Simple_repeat 3 47 0 2 1142 1137 302 89 23 chr6 73134228 73134744 -76382293 + MER68 LTR ERVL 14 563 0 2 1142 887 169 43 21 chr6 73134767 73134954 -76382083 - B2_Mm2 SINE B2 -3 192 2 2 1142 464 261 74 7 chr6 73135081 73135216 -76381821 + B1F1 SINE Alu 1 144 -5 2 1142 22 0 0 0 chr6 73135752 73135774 -76381263 + AT_rich Low_complexity Low_complexity 1 22 0 2 1142 289 198 26 35 chr6 73135820 73135935 -76381102 + A-rich Low_complexity Low_complexity 2 115 0 2 1142 337 275 19 38 chr6 73135967 73136073 -76380964 - Lx7 LINE L1 -377 7319 7216 2 1142 211 28 0 53 chr6 73136205 73136243 -76380794 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 2 1142 204 67 0 0 chr6 73136248 73136278 -76380759 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1142 864 258 70 70 chr6 73136285 73136572 -76380465 - B4A SINE B4 0 292 6 2 1142 675 233 80 35 chr6 73136871 73137071 -76379966 + B3 SINE B2 1 209 -7 2 1142 620 204 7 21 chr6 73137091 73137231 -76379806 + B1_Mur3 SINE Alu 12 149 0 2 1142 258 270 118 15 chr6 73137359 73137496 -76379541 + RSINE1 SINE B4 4 164 -1 2 1142 476 257 20 40 chr6 73137991 73138141 -76378896 - RSINE1 SINE B4 -17 148 2 2 1143 280 329 24 73 chr6 73138622 73138786 -76378251 + B3A SINE B2 45 200 -16 2 1143 835 175 0 34 chr6 73138962 73139110 -76377927 + B1_Mur3 SINE Alu 5 147 -2 2 1143 328 328 53 19 chr6 73139231 73139495 -76377542 + L1ME4a LINE L1 5627 5899 -225 2 1143 639 156 0 0 chr6 73139495 73139617 -76377420 + GA-rich Low_complexity Low_complexity 1 122 0 2 1143 970 126 206 28 chr6 73139619 73139799 -76377238 + B3 SINE B2 1 212 -4 2 1143 438 302 61 83 chr6 73140774 73141038 -76375999 - MTE2b LTR MaLR -14 365 108 3 1143 1045 36 0 0 chr6 73141041 73141178 -76375859 + B1_Mus2 SINE Alu 11 147 0 3 1143 243 0 0 0 chr6 73141178 73141205 -76375832 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1143 226 380 24 16 chr6 73141205 73141328 -76375709 - MTE2b LTR MaLR -295 124 1 3 1143 298 225 127 0 chr6 73142160 73142231 -76374806 - B4 SINE B4 -209 83 4 3 1143 255 103 0 0 chr6 73143128 73143167 -76373870 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1143 754 295 119 38 chr6 73143635 73144082 -76372955 + L1MB8 LINE L1 5696 6178 0 3 1143 26 0 0 0 chr6 73144126 73144152 -76372885 + AT_rich Low_complexity Low_complexity 1 26 0 3 1143 373 270 17 34 chr6 73144152 73144271 -76372766 + RSINE1 SINE B4 1 117 -48 3 1143 823 237 65 5 chr6 73144321 73144520 -76372517 + B3 SINE B2 3 213 -3 3 1143 32 43 0 0 chr6 73144520 73144566 -76372471 + AT_rich Low_complexity Low_complexity 1 46 0 3 1143 212 0 36 0 chr6 73145198 73145226 -76371811 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1143 226 222 37 0 chr6 73145257 73145311 -76371726 + Lx8 LINE L1 7135 7190 -283 3 1143 540 244 40 8 chr6 73146122 73146246 -76370791 - RSINE1 SINE B4 -29 136 9 3 1143 999 150 0 7 chr6 73146263 73146411 -76370626 - B1_Mur2 SINE Alu -2 147 1 3 1143 1312 138 14 14 chr6 73146494 73146715 -76370322 + URR1A DNA MER1_type 2 222 -4 3 1143 22 35 0 0 chr6 73147019 73147048 -76369989 + AT_rich Low_complexity Low_complexity 1 29 0 3 1143 861 184 100 0 chr6 73147401 73147457 -76369580 - ORR1C2 LTR MaLR -2 382 327 3 1143 392 0 21 0 chr6 73147457 73147505 -76369532 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1143 861 184 100 0 chr6 73147505 73147638 -76369399 - ORR1C2 LTR MaLR -58 326 175 3 1143 477 0 0 0 chr6 73147638 73147691 -76369346 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1143 1037 145 5 61 chr6 73147708 73147906 -76369131 - ORR1C2 LTR MaLR -197 187 1 3 1143 454 243 10 0 chr6 73148263 73148366 -76368671 - RSINE1 SINE B4 -57 108 5 3 1143 222 37 0 0 chr6 73148377 73148404 -76368633 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1143 324 0 0 0 chr6 73148405 73148441 -76368596 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1143 585 268 74 22 chr6 73148485 73148714 -76368323 - ORR1E LTR MaLR -108 251 11 3 1143 194 274 10 0 chr6 73149355 73149457 -76367580 + (TG)n Simple_repeat Simple_repeat 1 103 0 3 1143 879 302 52 22 chr6 73149477 73149745 -76367292 - B4 SINE B4 0 292 17 3 1143 341 258 86 50 chr6 73149919 73150058 -76366979 + LTR87 LTR ERVL? 370 513 -111 3 1143 301 173 0 0 chr6 73150889 73150941 -76366096 - L1_Mur2 LINE L1 -3955 1922 1871 3 1143 4215 123 22 8 chr6 73150941 73151574 -76365463 + Lx4A LINE L1 6415 7056 -2 3 1143 315 0 0 0 chr6 73151576 73151611 -76365426 + (TAG)n Simple_repeat Simple_repeat 1 35 0 3 1143 440 325 70 39 chr6 73151711 73151967 -76365070 + Lx8 LINE L1 6902 7165 -308 3 1143 261 98 0 0 chr6 73152349 73152390 -76364647 + (TTGG)n Simple_repeat Simple_repeat 4 44 0 3 1143 761 193 0 22 chr6 73152396 73152534 -76364503 - B1_Mur2 SINE Alu -7 142 8 3 1143 272 351 45 0 chr6 73152436 73152547 -76364490 - B4A SINE B4 -98 194 79 3 1143 810 177 7 39 chr6 73152694 73152847 -76364190 + B1_Mur3 SINE Alu 2 149 0 3 1143 438 20 0 0 chr6 73152925 73152976 -76364061 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1143 394 294 25 8 chr6 73152976 73153096 -76363941 - RSINE1 SINE B4 -43 122 1 3 1143 216 376 37 8 chr6 73153858 73153992 -76363045 + L2 LINE L2 2432 2569 -850 3 1143 326 307 78 15 chr6 73154183 73154388 -76362649 + L2 LINE L2 2757 2974 -445 3 1143 456 225 61 30 chr6 73155136 73155270 -76361767 + B3 SINE B2 70 211 -5 3 1143 432 264 0 8 chr6 73156418 73156548 -76360489 - MER5A1 DNA MER1_type -37 129 1 3 1143 2171 194 6 58 chr6 73156554 73157089 -76359948 + MURVY-LTR LTR ERV1 13 519 0 3 1143 1182 54 0 26 chr6 73157445 73157597 -76359440 + B1_Mus1 SINE Alu 1 148 0 3 1143 1348 161 4 18 chr6 73157663 73157891 -76359146 + URR1B DNA MER1_type 1 225 0 3 1143 769 175 51 7 chr6 73158000 73158138 -76358899 - B1_Mur2 SINE Alu -5 144 1 3 1143 489 161 0 0 chr6 73158226 73158313 -76358724 + (TA)n Simple_repeat Simple_repeat 1 87 0 3 1143 263 267 16 226 chr6 73158786 73159096 -76357941 + RLTR23 LTR ERV1 26 270 -160 3 1143 537 246 43 14 chr6 73159202 73159342 -76357695 + B3 SINE B2 66 209 -7 3 1143 423 263 70 0 chr6 73159501 73159615 -76357422 + RSINE1 SINE B4 11 132 -33 3 1143 516 335 12 0 chr6 73160106 73160267 -76356770 + RSINE1 SINE B4 3 165 0 3 1143 843 234 285 17 chr6 73160514 73160715 -76356322 - ORR1D1 LTR MaLR 0 374 174 3 1143 342 0 0 0 chr6 73160715 73160753 -76356284 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1143 843 234 285 17 chr6 73160753 73160846 -76356191 - ORR1D1 LTR MaLR -201 173 3 3 1143 267 262 24 12 chr6 73161169 73161254 -76355783 + MTE2a LTR MaLR 280 365 -14 3 1143 369 344 24 0 chr6 73161282 73161407 -76355630 - MER58A DNA MER1_type -17 207 80 3 1143 205 152 21 21 chr6 73161515 73161562 -76355475 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1143 604 227 162 0 chr6 73161629 73161814 -76355223 - B3 SINE B2 -1 215 1 3 1143 30 77 0 0 chr6 73161994 73162059 -76354978 + AT_rich Low_complexity Low_complexity 1 65 0 3 1143 482 188 19 9 chr6 73162208 73162324 -76354713 + B1_Mur1 SINE Alu 29 143 -6 3 1143 525 44 0 0 chr6 73162327 73162395 -76354642 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1143 3056 14 42 3 chr6 73162704 73163057 -76353980 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1143 43970 18 8 1 chr6 73163067 73169445 -76347592 + IAPEz-int LTR ERVK 35 6481 0 3 1143 3056 14 42 3 chr6 73169445 73169798 -76347239 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1143 1671 217 79 0 chr6 73170149 73170517 -76346520 - MTD LTR MaLR 0 419 23 3 1143 402 21 0 0 chr6 73170517 73170564 -76346473 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1143 475 183 19 37 chr6 73170576 73170684 -76346353 + B4A SINE B4 42 147 -145 3 1143 397 233 0 166 chr6 73170692 73170867 -76346170 - RMER21A LTR ERV1 -535 412 267 3 1143 265 240 0 107 chr6 73170932 73171016 -76346021 + B4A SINE B4 218 292 0 3 1143 297 0 0 0 chr6 73171023 73171056 -76345981 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1143 456 19 0 0 chr6 73171056 73171108 -76345929 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1143 463 295 31 31 chr6 73172400 73172418 -76344619 - RSINE1 SINE B4 -4 161 145 3 1143 405 0 0 0 chr6 73172418 73172463 -76344574 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1143 463 295 31 31 chr6 73172463 73172605 -76344432 - RSINE1 SINE B4 -21 144 1 3 1143 873 96 0 0 chr6 73172621 73172746 -76344291 + (TA)n Simple_repeat Simple_repeat 2 126 0 3 1143 513 141 0 0 chr6 73173157 73173242 -76343795 + (GA)n Simple_repeat Simple_repeat 2 86 0 3 1143 681 145 145 0 chr6 73173702 73173819 -76343218 + B1_Mus1 SINE Alu 3 136 -12 3 1143 483 18 0 0 chr6 73173819 73173875 -76343162 + (CAAAA)n Simple_repeat Simple_repeat 4 59 0 3 1143 349 195 62 0 chr6 73173906 73174019 -76343018 + MER33 DNA MER1_type 111 230 -94 3 1143 496 267 26 33 chr6 73174116 73174267 -76342770 - RSINE1 SINE B4 -12 153 4 3 1143 1324 167 5 0 chr6 73174375 73174590 -76342447 - B3 SINE B2 0 216 1 3 1143 1204 104 40 25 chr6 73174592 73174790 -76342247 - ORR1B1 LTR MaLR -17 377 177 3 1143 3159 9 0 3 chr6 73175061 73175408 -76341629 - ORR1A0 LTR MaLR 0 346 1 3 1143 1199 226 80 45 chr6 73175538 73175914 -76341123 + MTD LTR MaLR 1 389 -30 3 1143 332 198 330 0 chr6 73176116 73176207 -76340830 + B1_Mus2 SINE Alu 1 121 -26 3 1143 846 241 114 37 chr6 73176484 73176755 -76340282 + B4 SINE B4 1 292 0 3 1143 855 153 5 9 chr6 73176757 73177196 -76339841 + (CA)n Simple_repeat Simple_repeat 1 436 0 3 1143 520 272 0 0 chr6 73177463 73177588 -76339449 + RSINE1 SINE B4 4 128 -37 3 1143 198 0 0 0 chr6 73177913 73177935 -76339102 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1143 1110 118 0 0 chr6 73178150 73178320 -76338717 + (TA)n Simple_repeat Simple_repeat 1 170 0 3 1143 234 0 0 0 chr6 73178320 73178346 -76338691 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1143 288 0 0 0 chr6 73178345 73178377 -76338660 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1143 274 327 30 0 chr6 73178500 73178601 -76338436 + MER5A1 DNA MER1_type 1 104 -62 3 1143 343 160 0 26 chr6 73178720 73178767 -76338270 + polypyrimidine Low_complexity Low_complexity 32 78 0 3 1143 2810 126 99 10 chr6 73178767 73179250 -76337787 - RLTR11A2 LTR ERVK 0 527 2 3 1143 343 160 0 26 chr6 73179250 73179279 -76337758 + polypyrimidine Low_complexity Low_complexity 4 31 0 3 1143 764 162 49 14 chr6 73179280 73179424 -76337613 - B1_Mur3 SINE Alu 0 149 1 3 1143 1223 153 104 62 chr6 73179859 73180344 -76336693 - RLTR1B LTR ERV1 0 512 41 3 1143 1046 128 154 30 chr6 73180582 73180783 -76336254 + URR1A DNA MER1_type 1 226 0 3 1143 495 229 85 7 chr6 73180942 73181083 -76335954 + B3 SINE B2 1 152 -64 3 1143 364 326 30 8 chr6 73181428 73181561 -76335476 + MER58A DNA MER1_type 1 136 -88 3 1143 251 206 238 0 chr6 73182874 73182937 -76334100 - PB1D10 SINE Alu -9 108 31 3 1143 552 206 105 148 chr6 73182943 73183342 -76333695 + RMER10A LTR ERVL 19 400 -42 3 1143 552 249 153 6 chr6 73183408 73183578 -76333459 + B3A SINE B2 1 195 -3 3 1143 3166 126 52 31 chr6 73183611 73184031 -76333006 + Lx LINE L1 6098 6518 -136 3 1143 270 0 0 0 chr6 73184031 73184061 -76332976 + (TGGG)n Simple_repeat Simple_repeat 4 33 0 3 1143 3166 126 52 31 chr6 73184061 73184181 -76332856 + Lx LINE L1 6519 6647 -7 3 1143 657 257 87 0 chr6 73184181 73184364 -76332673 + Lx7 LINE L1 7127 7325 -371 3 1143 387 0 0 0 chr6 73184883 73184926 -76332111 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1143 403 222 98 22 chr6 73184950 73185042 -76331995 - PB1D10 SINE Alu -17 100 2 4 1143 918 181 88 140 chr6 73185300 73185729 -76331308 - RMER16 LTR ERVK 0 533 1 4 1143 261 0 0 0 chr6 73186108 73186137 -76330900 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1143 282 298 142 81 chr6 73186137 73186334 -76330703 + L1MDa LINE L1 489 697 -5936 4 1143 29 28 0 0 chr6 73186927 73186963 -76330074 + AT_rich Low_complexity Low_complexity 1 36 0 4 1143 419 52 17 0 chr6 73187877 73187935 -76329102 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 4 1143 1534 139 4 51 chr6 73187935 73188208 -76328829 - Lx4A LINE L1 -19 7039 6780 4 1143 1668 79 112 7 chr6 73188454 73188770 -76328267 + ORR1A2 LTR MaLR 1 346 0 4 1143 735 277 67 18 chr6 73189336 73189560 -76327477 - B4 SINE B4 -56 236 2 4 1143 8577 168 62 20 chr6 73189585 73192172 -76324865 - Lx6 LINE L1 -475 6985 4275 4 1143 378 0 0 0 chr6 73192172 73192214 -76324823 + (TTG)n Simple_repeat Simple_repeat 1 42 0 4 1143 8577 156 83 8 chr6 73192214 73192371 -76324666 - Lx6 LINE L1 -1606 4274 4118 4 1143 333 231 90 27 chr6 73192409 73192520 -76324517 + B4A SINE B4 2 119 -173 4 1143 408 116 43 14 chr6 73192520 73192590 -76324447 - MERVL_2A-int LTR ERVL -158 5603 5532 4 1143 7120 149 82 47 chr6 73192608 73192982 -76324055 - RLTR21 LTR ERVK 0 1572 1244 4 1143 183 80 0 0 chr6 73192982 73193007 -76324030 + (CATA)n Simple_repeat Simple_repeat 2 26 0 4 1143 7120 149 82 47 chr6 73193007 73193079 -76323958 - RLTR21 LTR ERVK -329 1243 1109 4 1143 596 103 21 0 chr6 73193079 73193176 -76323861 + (CATA)n Simple_repeat Simple_repeat 2 100 0 4 1143 7120 149 82 47 chr6 73193176 73194247 -76322790 - RLTR21 LTR ERVK -464 1108 3 4 1143 9175 148 43 38 chr6 73194247 73194331 -76322706 - MERVL_2A-int LTR ERVL -223 5538 5464 4 1143 1234 41 0 0 chr6 73194331 73194477 -76322560 + B1_Mus2 SINE Alu 2 147 0 4 1143 9175 148 43 38 chr6 73194477 73196008 -76321029 - MERVL_2A-int LTR ERVL -298 5463 3914 4 1143 2103 105 16 0 chr6 73196009 73196323 -76320714 + ORR1A2 LTR MaLR 1 319 -8 4 1143 6155 160 59 15 chr6 73196327 73197379 -76319658 - MERVL_2A-int LTR ERVL -1844 3917 2820 4 1143 1109 99 32 42 chr6 73197515 73197704 -76319333 + B2_Mm2 SINE B2 2 188 -7 4 1143 797 147 13 47 chr6 73199479 73199629 -76317408 + B1_Mur3 SINE Alu 5 149 0 4 1143 189 0 0 0 chr6 73199655 73199676 -76317361 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1143 236 351 17 17 chr6 73199697 73199813 -76317224 - MER104 DNA Tc2 -31 150 35 4 1143 660 182 0 0 chr6 73200716 73200848 -76316189 + CT-rich Low_complexity Low_complexity 2 133 0 4 1143 2880 139 122 16 chr6 73202147 73202664 -76314373 + RMER15 LTR ERVL 4 575 0 4 1143 459 260 15 30 chr6 73203745 73203876 -76313161 + RSINE1 SINE B4 4 132 -33 4 1143 249 240 0 0 chr6 73203890 73203965 -76313072 + CT-rich Low_complexity Low_complexity 4 78 0 4 1143 1415 134 4 43 chr6 73204036 73204270 -76312767 - URR1B DNA MER1_type 0 225 1 4 1143 186 189 27 0 chr6 73204372 73204409 -76312628 - MIRc SINE MIR -125 143 106 4 1143 1608 37 5 0 chr6 73205916 73206104 -76310933 + B2_Mm1t SINE B2 1 189 -4 4 1143 200 139 0 27 chr6 73206720 73206757 -76310280 + CT-rich Low_complexity Low_complexity 1 36 0 4 1143 222 273 0 29 chr6 73207581 73207649 -76309388 + T-rich Low_complexity Low_complexity 4 69 0 4 1143 442 216 71 9 chr6 73207649 73207761 -76309276 - B1_Mur1 SINE Alu 0 149 31 4 1143 240 35 0 0 chr6 73208968 73208997 -76308040 + (CAGG)n Simple_repeat Simple_repeat 1 29 0 4 1143 214 239 261 22 chr6 73209248 73209432 -76307605 - L2 LINE L2 -839 2580 2353 4 1143 203 303 82 22 chr6 73209746 73209881 -76307156 - L2 LINE L2 -2015 1404 1262 4 1143 662 150 39 13 chr6 73209943 73210098 -76306939 + (TATATG)n Simple_repeat Simple_repeat 4 162 0 4 1143 228 233 12 110 chr6 73211535 73211587 -76305450 - PB1D10 SINE Alu -15 102 59 4 1143 1212 175 9 5 chr6 73211587 73211811 -76305226 - URR1B DNA MER1_type 0 225 1 4 1143 232 195 0 0 chr6 73211823 73211871 -76305166 - B1F SINE Alu -100 49 2 4 1143 265 321 0 35 chr6 73212177 73212264 -76304773 + MIRb SINE MIR 28 111 -157 4 1143 498 127 107 10 chr6 73212279 73212382 -76304655 - PB1D9 SINE Alu -4 116 4 4 1143 363 218 21 11 chr6 73212442 73212549 -76304488 + B1_Mur2 SINE Alu 38 145 -4 4 1143 188 35 35 0 chr6 73212557 73212586 -76304451 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1143 1400 87 0 44 chr6 73212856 73213060 -76303977 + B2_Mm2 SINE B2 1 195 0 4 1143 564 243 24 73 chr6 73213077 73213241 -76303796 + B3A SINE B2 1 156 -42 4 1143 315 0 0 0 chr6 73213269 73213304 -76303733 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1143 372 191 0 0 chr6 73214067 73214156 -76302881 + (TG)n Simple_repeat Simple_repeat 1 89 0 4 1143 286 190 113 0 chr6 73214576 73214654 -76302383 - L1M5 LINE L1 -388 5791 5706 4 1143 209 33 33 0 chr6 73215278 73215308 -76301729 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1143 636 151 142 8 chr6 73215316 73215443 -76301594 - B1_Mus1 SINE Alu 0 148 5 4 1143 189 0 0 0 chr6 73215444 73215465 -76301572 + (CTTG)n Simple_repeat Simple_repeat 1 21 0 4 1143 804 179 0 22 chr6 73215466 73215649 -76301388 + CT-rich Low_complexity Low_complexity 2 180 0 4 1143 180 111 0 0 chr6 73217110 73217137 -76299900 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 1143 1237 48 0 0 chr6 73218432 73218577 -76298460 - B1_Mm SINE Alu 0 147 3 4 1143 294 95 0 0 chr6 73218709 73218751 -76298286 + (CAGGG)n Simple_repeat Simple_repeat 3 44 0 4 1143 1090 221 0 5 chr6 73221938 73222147 -76294890 + B3 SINE B2 5 212 -4 4 1143 532 302 105 39 chr6 73222952 73223238 -76293799 + ORR1E LTR MaLR 9 313 -46 4 1143 787 181 204 6 chr6 73223472 73223644 -76293393 - B3 SINE B2 -6 210 5 4 1143 790 187 15 0 chr6 73223894 73224028 -76293009 - B3 SINE B2 -79 137 2 4 1143 218 381 37 18 chr6 73224650 73224813 -76292224 - MIRb SINE MIR -95 173 8 4 1143 240 86 0 0 chr6 73226938 73226973 -76290064 + (TGG)n Simple_repeat Simple_repeat 2 36 0 4 1143 590 242 16 8 chr6 73227904 73228029 -76289008 - B1F SINE Alu -11 138 13 4 1143 358 315 60 72 chr6 73228040 73228290 -76288747 - L1M5 LINE L1 -956 5190 4944 4 1143 1119 99 52 6 chr6 73228292 73228465 -76288572 - B2_Mm2 SINE B2 -14 181 1 4 1143 509 158 8 109 chr6 73228644 73228772 -76288265 - B3A SINE B2 -2 196 82 4 1143 474 187 30 89 chr6 73228804 73228939 -76288098 - RMER1B Other Other 0 1066 940 4 1143 2320 212 223 31 chr6 73229073 73229825 -76287212 - RMER1B Other Other -195 871 11 4 1143 365 345 101 35 chr6 73230298 73230646 -76286391 - MER21B LTR ERV1 -109 754 384 4 1143 312 210 210 0 chr6 73230772 73230853 -76286184 + ID_B1 SINE B4 118 215 -9 4 1143 281 326 102 20 chr6 73231595 73231742 -76285295 - LTR33 LTR ERVL -344 171 13 4 1143 636 279 0 62 chr6 73233951 73234161 -76282876 + B3A SINE B2 2 198 0 4 1143 2287 107 0 58 chr6 73235065 73235411 -76281626 - ORR1A3 LTR MaLR 0 326 1 4 1143 241 329 141 60 chr6 73235412 73235561 -76281476 + Arthur1A DNA Tip100 12 172 -5 4 1143 4384 84 18 10 chr6 73235842 73236441 -76280596 - Lx3B LINE L1 -2 6971 6368 4 1143 1015 193 13 58 chr6 73236443 73236668 -76280369 - B3 SINE B2 0 216 2 4 1143 6779 14 1 0 chr6 73236785 73237526 -76279511 - RLTR4_Mm LTR ERV1 0 742 1 4 1143 1840 25 0 0 chr6 73237526 73237730 -76279307 - RLTR4_MM-int LTR ERV1 0 7601 7398 4 1143 51659 16 2 0 chr6 73237711 73243403 -76273634 - RLTR4_MM-int LTR ERV1 -1899 5702 1 4 1143 6779 14 1 0 chr6 73243403 73244144 -76272893 - RLTR4_Mm LTR ERV1 0 742 1 4 1143 1219 68 0 0 chr6 73244563 73244710 -76272327 - B1_Mm SINE Alu 0 147 1 4 1143 665 214 28 0 chr6 73245341 73245486 -76271551 - MTE2a LTR MaLR 0 379 231 4 1143 5839 192 54 16 chr6 73245501 73246669 -76270368 - MTC-int LTR MaLR 0 1258 47 4 1143 234 0 0 0 chr6 73246743 73246769 -76270268 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 4 1143 855 228 17 24 chr6 73246800 73247017 -76270020 - B3A SINE B2 -1 215 2 4 1143 1921 138 112 0 chr6 73247026 73247338 -76269699 - MTC LTR MaLR -74 347 1 4 1143 494 305 20 123 chr6 73247338 73247629 -76269408 - MTE2a LTR MaLR -149 230 3 4 1143 241 362 51 8 chr6 73247639 73247756 -76269281 + MIRb SINE MIR 136 257 -11 4 1143 407 219 62 0 chr6 73247931 73248024 -76269013 - MER5A DNA MER1_type -1 188 90 4 1143 539 281 100 66 chr6 73248024 73248434 -76268603 + MLT1F2 LTR MaLR 3 472 -88 4 1143 1318 185 72 9 chr6 73248434 73248706 -76268331 + ORR1D1 LTR MaLR 1 287 -80 4 1143 771 250 155 60 chr6 73248721 73249057 -76267980 + RLTR26 LTR ERVK 31 430 -212 4 1143 3647 60 29 18 chr6 73249134 73249625 -76267412 - LTRIS2 LTR ERV1 0 564 69 4 1143 520 232 11 90 chr6 73249743 73249916 -76267121 + ORR1D1 LTR MaLR 215 378 0 4 1143 261 167 70 53 chr6 73250036 73250093 -76266944 - MER5A DNA MER1_type -124 65 8 4 1143 515 260 112 60 chr6 73250618 73250851 -76266186 - RMER15 LTR ERVL -2 573 329 4 1143 722 177 9 0 chr6 73251406 73251519 -76265518 - B3A SINE B2 -75 123 10 4 1143 290 272 46 69 chr6 73251441 73251528 -76265509 - RSINE1 SINE B4 -79 86 2 4 1143 407 252 91 0 chr6 73251528 73251627 -76265410 - PB1D10 SINE Alu 0 117 10 4 1143 2198 175 16 22 chr6 73251814 73252236 -76264801 + RLTR20B3 LTR ERVK 142 530 -47 4 1143 740 197 109 0 chr6 73252235 73252382 -76264655 + ORR1D1 LTR MaLR 19 181 -193 4 1143 207 0 0 0 chr6 73252382 73252405 -76264632 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 1143 1102 127 9 0 chr6 73252405 73252737 -76264300 + (TTC)n Simple_repeat Simple_repeat 1 334 0 4 1143 399 41 0 0 chr6 73252728 73252777 -76264260 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1143 446 289 22 22 chr6 73252811 73252949 -76264088 - B3A SINE B2 -59 139 2 4 1143 856 171 0 33 chr6 73252959 73253110 -76263927 - B1_Mur4 SINE Alu -2 148 3 4 1143 324 0 0 0 chr6 73253798 73253834 -76263203 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1143 487 286 21 57 chr6 73254052 73254193 -76262844 - ID_B1 SINE B4 0 224 89 4 1143 190 342 182 25 chr6 73254600 73254759 -76262278 - L3 LINE CR1 -68 4421 4238 4 1143 976 240 109 78 chr6 73254935 73255100 -76261937 - ORR1D2 LTR MaLR -25 345 168 5 1143 2061 116 18 36 chr6 73255100 73255431 -76261606 + Lx3B LINE L1 6649 6973 0 5 1143 976 240 109 78 chr6 73255431 73255457 -76261580 - ORR1D2 LTR MaLR -203 167 142 5 1143 186 43 0 0 chr6 73255457 73255480 -76261557 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1143 976 253 99 86 chr6 73255480 73255651 -76261386 - ORR1D2 LTR MaLR -229 141 1 5 1143 21 36 0 0 chr6 73255838 73255866 -76261171 + AT_rich Low_complexity Low_complexity 1 28 0 5 1143 975 197 33 24 chr6 73256025 73256238 -76260799 - B3 SINE B2 0 216 2 5 1143 638 167 120 8 chr6 73256244 73256377 -76260660 - B1_Mur4 SINE Alu 0 150 3 5 1143 649 286 48 19 chr6 73256399 73256609 -76260428 - B3 SINE B2 0 216 1 5 1143 414 312 78 25 chr6 73256882 73257122 -76259915 - MLT1E1A LTR MaLR -172 508 283 5 1143 1320 233 44 48 chr6 73257194 73257275 -76259762 - B4A SINE B4 0 292 221 5 1143 2544 125 23 0 chr6 73257275 73257660 -76259377 - Lx2B LINE L1 -9 6991 6598 5 1143 1320 233 44 48 chr6 73257660 73257871 -76259166 - B4A SINE B4 -72 220 1 5 1143 286 234 0 15 chr6 73258706 73258771 -76258266 - MER104 DNA Tc2 -94 87 24 5 1143 204 361 71 39 chr6 73258890 73259017 -76258020 - L3 LINE CR1 -3 4486 4356 5 1143 923 287 42 89 chr6 73259075 73259517 -76257520 - MTD LTR MaLR -14 405 1 5 1143 819 226 104 10 chr6 73259574 73259766 -76257271 + B3 SINE B2 1 210 -6 5 1143 775 314 58 50 chr6 73260702 73261101 -76255936 - Helitron1Na_Mam RC Helitron -140 922 521 5 1143 495 289 58 0 chr6 73261113 73261234 -76255803 - RSINE1 SINE B4 -33 132 5 5 1143 1062 196 14 19 chr6 73261396 73261609 -76255428 + B3 SINE B2 1 212 -4 5 1143 563 257 231 35 chr6 73262046 73262336 -76254701 + Lx8 LINE L1 7127 7473 0 5 1143 2259 105 3 0 chr6 73262357 73262672 -76254365 - ORR1A2 LTR MaLR -11 316 1 5 1143 829 273 60 120 chr6 73262708 73263108 -76253929 + MLT1B LTR MaLR 11 386 -4 5 1143 421 234 11 0 chr6 73263309 73263403 -76253634 - PB1D10 SINE Alu -5 112 18 5 1143 628 83 41 8 chr6 73263869 73263991 -76253046 + (TCTA)n Simple_repeat Simple_repeat 1 126 0 5 1143 525 219 89 0 chr6 73263999 73264122 -76252915 - RSINE1 SINE B4 -8 157 24 5 1143 929 236 124 16 chr6 73264181 73264453 -76252584 + RMER17C LTR ERVK 1 303 -107 5 1143 297 0 0 0 chr6 73264453 73264486 -76252551 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1143 929 236 124 16 chr6 73264486 73264583 -76252454 + RMER17C LTR ERVK 304 409 -1 5 1143 360 0 0 0 chr6 73264679 73264719 -76252318 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1143 608 184 8 16 chr6 73265067 73265194 -76251843 - RMER15 LTR ERVL -28 547 422 5 1143 381 292 176 16 chr6 73265468 73265656 -76251381 + MIR SINE MIR 35 252 -10 5 1143 654 257 67 22 chr6 73266008 73266187 -76250850 - MTE2a LTR MaLR 0 379 193 5 1143 219 173 19 0 chr6 73266187 73266239 -76250798 + (GGCTG)n Simple_repeat Simple_repeat 1 53 0 5 1143 180 312 88 44 chr6 73266289 73266403 -76250634 + L2c LINE L2 3269 3387 0 5 1143 232 231 58 0 chr6 73266496 73266548 -76250489 + MTEa LTR MaLR 57 111 -248 5 1143 1115 270 38 26 chr6 73266623 73266965 -76250072 - ORR1D2 LTR MaLR 0 370 25 5 1143 1779 246 58 14 chr6 73267013 73267499 -76249538 - RLTR12B LTR ERVK -21 507 1 5 1143 403 234 143 41 chr6 73267519 73267666 -76249371 + MTEa LTR MaLR 218 379 0 5 1143 724 242 118 0 chr6 73267784 73267945 -76249092 + B3A SINE B2 1 180 -18 5 1143 302 333 8 26 chr6 73268065 73268182 -76248855 + Lx8 LINE L1 7067 7181 -292 5 1143 292 231 38 28 chr6 73268258 73268346 -76248691 - B4A SINE B4 -76 89 2 5 1143 962 246 0 100 chr6 73268346 73268417 -76248620 - ID_B1 SINE B4 0 224 160 5 1143 2636 111 23 8 chr6 73268417 73268816 -76248221 - MTB_Mm LTR MaLR 0 407 3 5 1143 962 246 0 100 chr6 73268816 73268993 -76248044 - ID_B1 SINE B4 -65 159 1 5 1143 306 260 35 40 chr6 73268995 73269157 -76247880 - L1MA6 LINE L1 0 6300 6144 5 1144 331 333 46 92 chr6 73269279 73269497 -76247540 + MIR SINE MIR 18 225 -37 5 1144 262 253 26 26 chr6 73270699 73270776 -76246261 - MER5B DNA MER1_type -101 77 1 5 1144 821 303 5 18 chr6 73271588 73271810 -76245227 + B4A SINE B4 6 224 -68 5 1144 456 314 0 8 chr6 73271828 73271950 -76245087 + RSINE1 SINE B4 44 164 -1 5 1144 205 327 9 96 chr6 73272340 73272455 -76244582 + MIRb SINE MIR 40 146 -122 5 1144 553 235 149 11 chr6 73272722 73272903 -76244134 + B3 SINE B2 1 206 -10 5 1144 365 148 0 0 chr6 73272904 73272958 -76244079 + HAL1-3A_ME LINE L1 1977 2030 -828 5 1144 191 291 52 84 chr6 73274092 73274246 -76242791 - L2 LINE L2 -777 2642 2494 5 1144 25 83 0 0 chr6 73275278 73275338 -76241699 + AT_rich Low_complexity Low_complexity 1 60 0 5 1144 1149 324 40 12 chr6 73275488 73276060 -76240977 + L1M2 LINE L1 4803 5390 -753 5 1144 1901 204 119 2 chr6 73276061 73276389 -76240648 + Lx9 LINE L1 7138 7484 -160 5 1144 213 39 0 0 chr6 73276389 73276415 -76240622 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1144 1901 204 119 2 chr6 73276415 73276538 -76240499 + Lx9 LINE L1 7485 7641 -3 5 1144 295 206 44 0 chr6 73276533 73276601 -76240436 + L1_Mur2 LINE L1 5340 5419 -467 5 1144 1026 149 0 0 chr6 73276695 73276843 -76240194 - B1_Mur4 SINE Alu 0 150 3 5 1144 884 310 17 83 chr6 73277369 73277731 -76239306 + MLT1A0 LTR MaLR 5 342 -23 5 1144 396 103 0 0 chr6 73277791 73277849 -76239188 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1144 240 319 0 0 chr6 73278040 73278134 -76238903 + (TA)n Simple_repeat Simple_repeat 2 95 0 5 1144 923 279 18 18 chr6 73278135 73278409 -76238628 - B4 SINE B4 -16 276 3 5 1144 288 0 0 0 chr6 73278498 73278530 -76238507 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1144 432 0 0 0 chr6 73278530 73278577 -76238460 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1144 315 0 0 0 chr6 73280160 73280195 -76236842 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1144 481 160 16 0 chr6 73280195 73280320 -76236717 + GA-rich Low_complexity Low_complexity 1 127 0 5 1144 561 121 0 0 chr6 73281505 73281596 -76235441 - ORR1B2 LTR MaLR -8 359 269 5 1144 645 138 168 19 chr6 73281608 73281763 -76235274 - ORR1B2 LTR MaLR -189 178 1 5 1144 282 29 0 0 chr6 73282004 73282039 -76234998 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 5 1144 388 302 36 62 chr6 73283101 73283295 -76233742 - Lx8 LINE L1 -308 7165 6977 5 1144 846 205 52 24 chr6 73283452 73283662 -76233375 + B3 SINE B2 1 216 0 5 1144 364 321 14 7 chr6 73285154 73285295 -76231742 - MLT1B LTR MaLR -5 462 321 5 1144 390 277 33 8 chr6 73285506 73285626 -76231411 - MLT1B LTR MaLR -255 135 13 5 1144 283 318 41 112 chr6 73286053 73286145 -76230892 - MTC LTR MaLR -259 162 68 5 1144 4879 59 5 0 chr6 73286145 73286742 -76230295 + L1_Mus2 LINE L1 5967 6566 0 5 1144 283 318 41 112 chr6 73286742 73286819 -76230218 - MTC LTR MaLR -354 67 5 5 1144 234 176 0 0 chr6 73286833 73286884 -76230153 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 5 1144 563 74 12 0 chr6 73288134 73288215 -76228822 + (TATG)n Simple_repeat Simple_repeat 4 85 0 5 1144 457 285 48 20 chr6 73288215 73288328 -76228709 - B3A SINE B2 -47 151 40 5 1144 2325 147 24 5 chr6 73288328 73288698 -76228339 + ORR1C1 LTR MaLR 2 378 0 5 1144 457 285 48 20 chr6 73288698 73288731 -76228306 - B3A SINE B2 -159 39 1 5 1144 191 365 10 30 chr6 73289296 73289395 -76227642 - MIRb SINE MIR -28 240 144 5 1144 888 10 0 0 chr6 73289436 73289537 -76227500 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 5 1144 1027 241 70 22 chr6 73289709 73289980 -76227057 - Lx8 LINE L1 -3 7470 7187 5 1144 928 142 22 38 chr6 73290026 73290159 -76226878 - ORR1B1 LTR MaLR -210 184 54 5 1144 4349 33 0 41 chr6 73290159 73290700 -76226337 + MURVY-LTR LTR ERV1 1 519 0 5 1144 928 142 22 38 chr6 73290700 73290749 -76226288 - ORR1B1 LTR MaLR -341 53 5 5 1144 2536 168 142 123 chr6 73290753 73292321 -76224716 - ORR1B1-int LTR MaLR -192 1771 468 5 1144 633 68 19 0 chr6 73292307 73292410 -76224627 - ORR1B1-int LTR MaLR -1858 105 1 5 1144 719 115 306 8 chr6 73292414 73292646 -76224391 - ORR1B1 LTR MaLR -8 321 21 5 1144 263 213 0 0 chr6 73293300 73293361 -76223676 + MER46C DNA MER2_type 265 325 -13 5 1144 272 321 0 12 chr6 73293575 73293657 -76223380 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1144 896 210 43 5 chr6 73294198 73294385 -76222652 + B3 SINE B2 4 197 -19 5 1144 36198 34 1 0 chr6 73294388 73300516 -76216521 + L1Md_T LINE L1 1 5589 -297 5 1144 9166 5 0 0 chr6 73300516 73301512 -76215525 + L1Md_T LINE L1 5590 6585 0 5 1144 282 239 0 0 chr6 73302547 73302618 -76214419 + T-rich Low_complexity Low_complexity 1 71 0 5 1144 890 159 0 6 chr6 73302617 73302782 -76214255 + CT-rich Low_complexity Low_complexity 1 164 0 5 1144 990 121 0 0 chr6 73302782 73302939 -76214098 + (TTTC)n Simple_repeat Simple_repeat 1 157 0 5 1144 669 254 36 42 chr6 73303110 73303303 -76213734 + B3A SINE B2 1 192 -6 5 1144 261 0 0 0 chr6 73303534 73303563 -76213474 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1144 538 283 58 0 chr6 73303574 73303712 -76213325 - B3A SINE B2 -50 148 3 5 1144 224 418 8 8 chr6 73303722 73303845 -76213192 - MIRc SINE MIR -125 143 21 5 1144 376 297 53 20 chr6 73303915 73304066 -76212971 - Tigger15a DNA TcMar 0 715 560 5 1144 370 204 57 0 chr6 73304733 73304821 -76212216 + Lx7 LINE L1 7604 7696 0 5 1144 252 262 0 15 chr6 73304953 73305019 -76212018 - HAL1 LINE L1 -585 1922 1858 5 1144 457 330 59 24 chr6 73305049 73305338 -76211699 - HAL1 LINE L1 -710 1797 1499 5 1144 614 154 12 25 chr6 73305602 73305762 -76211275 + GA-rich Low_complexity Low_complexity 1 158 0 5 1144 321 270 50 67 chr6 73305801 73305920 -76211117 - MTEa LTR MaLR -262 117 1 5 1144 14632 80 20 9 chr6 73306121 73309011 -76208026 + L1VL2 LINE L1 64 2988 -627 5 1144 250 309 106 2 chr6 73309282 73309423 -76207614 - L1MA4A LINE L1 -369 5931 5777 5 1144 399 127 0 0 chr6 73309888 73309951 -76207086 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1144 315 0 0 0 chr6 73310184 73310219 -76206818 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 5 1144 841 117 5 58 chr6 73310219 73310409 -76206628 + CT-rich Low_complexity Low_complexity 1 180 0 5 1144 313 276 126 7 chr6 73311810 73311945 -76205092 + MER5A1 DNA MER1_type 10 160 -6 5 1144 270 0 0 0 chr6 73313169 73313199 -76203838 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1144 615 172 0 0 chr6 73313199 73313362 -76203675 + GA-rich Low_complexity Low_complexity 2 164 0 6 1144 226 216 0 19 chr6 73313366 73313418 -76203619 - RSINE1 SINE B4 -33 132 82 6 1144 217 242 30 81 chr6 73313625 73313724 -76203313 - B4A SINE B4 -185 107 14 6 1144 180 0 0 0 chr6 73314303 73314323 -76202714 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 6 1144 1383 113 0 10 chr6 73314690 73314887 -76202150 - B2_Mm2 SINE B2 0 195 1 6 1144 1684 178 65 68 chr6 73314936 73315304 -76201733 + ORR1B2 LTR MaLR 1 367 0 6 1144 876 221 64 0 chr6 73315896 73316100 -76200937 + URR1B DNA MER1_type 9 225 0 6 1144 207 0 0 0 chr6 73316224 73316247 -76200790 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1144 180 125 0 0 chr6 73316408 73316440 -76200597 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 1144 452 40 53 0 chr6 73317374 73317449 -76199588 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1144 1144 156 5 55 chr6 73317537 73317754 -76199283 - Lx9 LINE L1 -607 7037 6832 6 1144 344 373 75 0 chr6 73318000 73318201 -76198836 - MIRb SINE MIR -18 250 35 6 1144 433 289 50 56 chr6 73318312 73318473 -76198564 - RSINE1 SINE B4 0 165 6 6 1144 2013 116 72 48 chr6 73319775 73319973 -76197064 + RMER17C LTR ERVK 1 182 -228 6 1144 762 93 0 0 chr6 73319973 73320081 -76196956 + (TTCCC)n Simple_repeat Simple_repeat 4 111 0 6 1144 2013 116 72 48 chr6 73320081 73320282 -76196755 + RMER17C LTR ERVK 183 409 -1 6 1144 291 228 205 40 chr6 73320393 73320544 -76196493 - ORR1E LTR MaLR -165 194 19 6 1144 250 152 0 33 chr6 73320547 73320608 -76196429 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1144 22 0 0 0 chr6 73321562 73321584 -76195453 + AT_rich Low_complexity Low_complexity 1 22 0 6 1144 204 184 0 0 chr6 73321618 73321667 -76195370 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1144 1143 194 102 37 chr6 73321671 73321966 -76195071 + RLTR46 LTR ERVK 1 314 -6 6 1144 679 288 0 0 chr6 73321985 73322148 -76194889 - RSINE1 SINE B4 0 165 3 6 1144 21 0 0 0 chr6 73322155 73322176 -76194861 + AT_rich Low_complexity Low_complexity 1 21 0 6 1144 1023 249 71 97 chr6 73322389 73322771 -76194266 + MTE2b LTR MaLR 3 374 -5 6 1144 333 314 141 45 chr6 73322881 73323310 -76193727 + MLT1H LTR MaLR 70 624 -3 6 1144 542 258 42 47 chr6 73323465 73323656 -76193381 - MLT1B LTR MaLR -4 386 197 6 1144 234 316 58 89 chr6 73323651 73323799 -76193238 - MLT1B LTR MaLR -141 249 111 6 1144 258 320 90 30 chr6 73323799 73323899 -76193138 - PB1D10 SINE Alu -11 106 1 6 1144 234 316 58 89 chr6 73323899 73324007 -76193030 - MLT1B LTR MaLR -280 110 1 6 1144 476 294 72 29 chr6 73324951 73325158 -76191879 + B3 SINE B2 1 216 0 6 1144 446 321 114 24 chr6 73325641 73325887 -76191150 + B4A SINE B4 2 269 -23 6 1144 411 21 0 0 chr6 73325887 73325935 -76191102 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1144 201 231 0 0 chr6 73326380 73326420 -76190617 + T-rich Low_complexity Low_complexity 13 52 0 6 1144 682 232 21 63 chr6 73326420 73326609 -76190428 - B3A SINE B2 -16 182 2 6 1144 201 231 0 0 chr6 73326609 73326620 -76190417 + T-rich Low_complexity Low_complexity 2 12 0 6 1144 479 320 50 29 chr6 73327192 73327443 -76189594 - L1MA4A LINE L1 -395 5908 5677 6 1144 825 271 24 0 chr6 73327460 73327670 -76189367 + B3 SINE B2 2 216 0 6 1144 491 271 96 50 chr6 73327744 73328148 -76188889 + L1M5 LINE L1 5135 5562 -602 6 1144 257 281 48 89 chr6 73328214 73328382 -76188655 + L1M5 LINE L1 5694 5854 -310 6 1144 180 0 0 0 chr6 73328600 73328620 -76188417 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 6 1144 270 0 0 0 chr6 73328623 73328653 -76188384 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1144 281 182 169 0 chr6 73328747 73328824 -76188213 - MTE2a LTR MaLR -18 361 272 6 1144 1264 0 0 0 chr6 73328906 73329053 -76187984 - L1Md_T LINE L1 0 6582 6436 6 1144 2559 37 44 2 chr6 73329053 73329438 -76187599 + L1_Mm LINE L1 5124 5475 -408 6 1144 264 333 57 51 chr6 73329438 73329596 -76187441 - MTE2a LTR MaLR -163 216 58 6 1144 261 83 0 0 chr6 73329809 73329845 -76187192 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1144 25 0 0 0 chr6 73330863 73330888 -76186149 + AT_rich Low_complexity Low_complexity 1 25 0 6 1144 2757 153 20 0 chr6 73330888 73331327 -76185710 - Lx4A LINE L1 0 7058 6611 6 1144 2833 70 8 0 chr6 73331326 73331697 -76185340 + L1_Mus1 LINE L1 6194 6567 0 6 1144 3431 121 12 8 chr6 73331717 73332207 -76184830 - Lx4A LINE L1 -451 6607 6116 6 1144 326 146 0 0 chr6 73332234 73332282 -76184755 - Lx4A LINE L1 -895 6163 6116 6 1144 412 324 27 22 chr6 73332356 73332539 -76184498 - Kanga1 DNA Tc2 -1323 422 239 6 1144 227 208 0 0 chr6 73332640 73332688 -76184349 + T-rich Low_complexity Low_complexity 1 48 0 6 1144 793 201 66 181 chr6 73332734 73332864 -76184173 - RMER5 LTR ERV1 -90 444 352 6 1144 562 58 0 0 chr6 73332864 73332950 -76184087 - L1Md_F3 LINE L1 0 6584 6499 6 1144 793 201 66 181 chr6 73332950 73333244 -76183793 - RMER5 LTR ERV1 -183 351 69 6 1144 1393 134 36 18 chr6 73333250 73333470 -76183567 - Lx4A LINE L1 -438 6620 6397 6 1144 306 176 0 0 chr6 73333521 73333572 -76183465 - ID4 SINE ID -30 53 3 6 1144 348 336 30 0 chr6 73333639 73333770 -76183267 - Kanga1 DNA Tc2 -1607 138 4 6 1144 553 355 35 39 chr6 73334638 73334949 -76182088 + LTR16C LTR ERVL 180 489 0 6 1144 903 263 94 62 chr6 73335524 73335864 -76181173 + MTEb LTR MaLR 27 377 -2 6 1144 455 242 31 46 chr6 73337106 73337236 -76179801 + ID_B1 SINE B4 88 215 -9 6 1144 476 276 0 0 chr6 73337452 73337557 -76179480 + B3A SINE B2 44 148 -50 6 1144 489 17 0 0 chr6 73337579 73337637 -76179400 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1144 262 180 44 11 chr6 73338484 73338574 -76178463 + Lx9 LINE L1 7552 7644 0 6 1144 816 57 0 0 chr6 73338617 73338723 -76178314 + (TCCA)n Simple_repeat Simple_repeat 2 107 0 6 1144 258 255 0 0 chr6 73338723 73338774 -76178263 + polypyrimidine Low_complexity Low_complexity 3 53 0 6 1144 1172 46 7 0 chr6 73339807 73339958 -76177079 + (TCTCCC)n Simple_repeat Simple_repeat 6 157 0 6 1144 450 296 0 49 chr6 73340100 73340242 -76176795 + RSINE1 SINE B4 30 164 -1 6 1144 2044 196 5 12 chr6 73341050 73341458 -76175579 + MTD LTR MaLR 1 405 -14 6 1144 3540 18 5 0 chr6 73342068 73342462 -76174575 + MTA_Mm LTR MaLR 1 396 0 6 1144 9655 15 8 1 chr6 73342462 73343552 -76173485 + MTA_Mm-int LTR MaLR 1 1098 0 6 1144 3566 13 5 0 chr6 73343552 73343946 -76173091 + MTA_Mm LTR MaLR 1 396 0 6 1144 5496 2 0 0 chr6 73344676 73345270 -76171767 - L1Md_A LINE L1 0 6582 5989 6 1144 342 0 0 0 chr6 73345347 73345385 -76171652 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1144 369 86 0 0 chr6 73345565 73345623 -76171414 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1144 397 287 47 99 chr6 73345625 73345818 -76171219 - ORR1E LTR MaLR -192 182 1 6 1144 1217 236 140 9 chr6 73345833 73346183 -76170854 + MTD LTR MaLR 1 396 -23 6 1144 1167 214 163 7 chr6 73346196 73346502 -76170535 + ORR1D2 LTR MaLR 9 362 -8 6 1144 555 67 28 19 chr6 73347010 73347116 -76169921 + (TCTCTG)n Simple_repeat Simple_repeat 2 108 0 6 1144 571 263 152 13 chr6 73347195 73347426 -76169611 + MLT2B1 LTR ERVL 1 263 -257 6 1144 3999 67 8 8 chr6 73347999 73348512 -76168525 - L1_Mus1 LINE L1 0 6567 6055 6 1144 1341 267 44 8 chr6 73349279 73349645 -76167392 - MTEa LTR MaLR 0 379 1 6 1144 372 216 28 38 chr6 73351702 73351808 -76165229 + MTEb LTR MaLR 238 342 -37 6 1144 2375 118 3 3 chr6 73351997 73352361 -76164676 - RLTR33 LTR ERVK 0 678 315 6 1144 1548 44 0 15 chr6 73352361 73352567 -76164470 - L1Md_F3 LINE L1 -1 6583 6381 6 1144 8261 39 13 0 chr6 73352571 73354095 -76162942 - L1Md_F2 LINE L1 0 6582 5054 6 1144 8644 24 1 0 chr6 73354090 73355429 -76161608 - L1Md_T LINE L1 0 6582 5243 6 1144 37689 52 2 4 chr6 73355440 73361601 -76155436 - L1Md_T LINE L1 0 6582 441 6 1144 2200 88 36 6 chr6 73361606 73361937 -76155100 - RLTR33 LTR ERVK -337 341 1 6 1144 621 340 50 19 chr6 73362440 73362800 -76154237 + L1MA4A LINE L1 5549 5919 -384 6 1144 294 87 0 0 chr6 73362822 73362868 -76154169 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1144 731 279 12 0 chr6 73363117 73363278 -76153759 + B3A SINE B2 1 163 -35 6 1144 26 30 0 0 chr6 73363307 73363340 -76153697 + AT_rich Low_complexity Low_complexity 1 33 0 6 1144 317 155 129 40 chr6 73363889 73363990 -76153047 + Lx6 LINE L1 1268 1377 -4503 6 1144 331 243 180 26 chr6 73364267 73364461 -76152576 - RMER13B LTR ERVK -410 498 275 6 1144 7113 213 68 11 chr6 73364463 73366508 -76150529 + Lx6 LINE L1 5113 7544 -152 6 1144 4690 172 80 11 chr6 73366554 73367382 -76149655 - Lx5 LINE L1 0 7050 6166 6 1144 2661 125 5 2 chr6 73367383 73367791 -76149246 + L1_Mur2 LINE L1 4626 5034 -843 6 1144 734 182 25 25 chr6 73367793 73367956 -76149081 + Lx6 LINE L1 7534 7696 0 6 1144 378 127 0 38 chr6 73367964 73368070 -76148967 + (CCAA)n Simple_repeat Simple_repeat 2 103 0 6 1144 237 203 51 0 chr6 73368088 73368147 -76148890 + B1F SINE Alu 81 142 -7 6 1144 217 340 31 10 chr6 73369297 73369395 -76147642 - MIR SINE MIR -63 145 46 6 1144 264 264 0 0 chr6 73369602 73369674 -76147363 - Lx8 LINE L1 -8 7465 7394 6 1144 198 71 0 0 chr6 73369804 73369832 -76147205 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 6 1144 303 234 17 22 chr6 73369850 73370029 -76147008 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 1144 389 324 0 0 chr6 73370034 73370139 -76146898 - RSINE1 SINE B4 -2 163 59 6 1144 2259 197 11 17 chr6 73371409 73371477 -76145560 - L1_Mur3 LINE L1 -4155 1725 1664 6 1144 1040 189 29 29 chr6 73371477 73371638 -76145399 - Lx6 LINE L1 0 7460 7299 6 1144 2272 105 6 58 chr6 73371638 73371983 -76145054 + ORR1A2 LTR MaLR 1 327 0 6 1144 1040 189 29 29 chr6 73371983 73372028 -76145009 - Lx6 LINE L1 -162 7298 7254 6 1144 2586 201 19 24 chr6 73372028 73372532 -76144505 - L1_Mur3 LINE L1 -4217 1663 1199 6 1144 180 0 0 0 chr6 73372532 73372552 -76144485 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1144 2586 232 99 89 chr6 73372552 73373396 -76143641 - L1_Mur3 LINE L1 -6530 1198 301 6 1144 223 255 0 0 chr6 73373451 73373498 -76143539 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1144 646 289 41 102 chr6 73373498 73373791 -76143246 - Lx8 LINE L1 -351 7122 6848 6 1144 471 130 0 0 chr6 73373804 73373881 -76143156 + (CAA)n Simple_repeat Simple_repeat 2 78 0 7 1144 287 233 110 0 chr6 73374740 73374813 -76142224 - B3 SINE B2 -7 209 129 7 1144 182 37 37 0 chr6 73376160 73376187 -76140850 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 7 1144 2158 46 0 0 chr6 73376300 73376560 -76140477 - L1Md_A LINE L1 0 6582 6323 7 1144 220 239 56 0 chr6 73376965 73377036 -76140001 + MIRb SINE MIR 106 180 -88 7 1144 370 289 153 79 chr6 73377480 73377683 -76139354 - MER20 DNA MER1_type -1 218 1 7 1144 375 270 9 18 chr6 73378413 73378526 -76138511 + GA-rich Low_complexity Low_complexity 2 113 0 7 1144 702 235 0 0 chr6 73379603 73379886 -76137151 + (TG)n Simple_repeat Simple_repeat 1 283 0 7 1144 208 237 0 0 chr6 73379886 73379924 -76137113 + (CGTG)n Simple_repeat Simple_repeat 3 40 0 7 1144 240 353 58 36 chr6 73379924 73380062 -76136975 - RSINE1 SINE B4 0 165 25 7 1144 562 224 98 54 chr6 73380059 73380262 -76136775 - B4A SINE B4 -55 237 26 7 1144 369 0 0 0 chr6 73380481 73380522 -76136515 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1144 189 0 0 0 chr6 73380522 73380542 -76136495 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1144 694 204 53 31 chr6 73381452 73381636 -76135401 - Lx4B LINE L1 0 7058 6798 7 1144 306 0 0 0 chr6 73382294 73382328 -76134709 + (TA)n Simple_repeat Simple_repeat 1 34 0 7 1144 534 238 47 16 chr6 73382883 73383011 -76134026 + B3 SINE B2 17 148 -68 7 1144 230 206 0 16 chr6 73383258 73383322 -76133715 + GA-rich Low_complexity Low_complexity 3 65 0 7 1144 1076 308 53 0 chr6 73383404 73383764 -76133273 - MTEa LTR MaLR 0 379 1 7 1144 390 42 0 0 chr6 73383907 73383955 -76133082 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 1144 461 297 88 35 chr6 73384706 73384877 -76132160 + MTEa LTR MaLR 1 180 -199 7 1144 770 150 19 5 chr6 73385996 73386204 -76130833 + CT-rich Low_complexity Low_complexity 1 211 0 7 1144 429 20 0 0 chr6 73386266 73386316 -76130721 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1144 483 18 0 0 chr6 73386316 73386371 -76130666 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1144 1554 111 73 0 chr6 73388280 73388514 -76128523 + Lx2 LINE L1 6747 6997 0 7 1144 548 290 102 20 chr6 73388679 73388876 -76128161 + MLT2B1 LTR ERVL 6 218 -302 7 1144 246 81 0 0 chr6 73388965 73389002 -76128035 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1144 864 71 19 19 chr6 73389011 73389169 -76127868 + (TCTA)n Simple_repeat Simple_repeat 4 161 0 7 1144 516 32 0 0 chr6 73389382 73389444 -76127593 + (TCC)n Simple_repeat Simple_repeat 2 63 0 7 1144 228 209 0 0 chr6 73389455 73389498 -76127539 - MLT1I LTR MaLR 0 411 369 7 1144 250 283 0 42 chr6 73389867 73389963 -76127074 + (TA)n Simple_repeat Simple_repeat 2 93 0 7 1144 579 203 59 0 chr6 73390646 73390764 -76126273 + B3A SINE B2 5 129 -69 7 1144 468 0 0 0 chr6 73390794 73390846 -76126191 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1144 24721 17 0 1 chr6 73390928 73394462 -76122575 - L1Md_T LINE L1 0 6582 3052 7 1144 24721 16 0 0 chr6 73394460 73397991 -76119046 - L1Md_T LINE L1 0 6582 3052 7 17 38775 29 0 0 chr6 73397989 73404437 -76112600 - L1Md_T LINE L1 0 6585 41 7 1145 189 0 0 0 chr6 73405291 73405312 -76111725 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1145 1455 152 70 80 chr6 73405390 73405776 -76111261 - RMER6C LTR ERVK 0 690 309 7 1145 772 167 278 6 chr6 73405816 73405985 -76111052 + B3 SINE B2 2 216 0 7 1145 1317 120 16 0 chr6 73406207 73406399 -76110638 - B2_Mm2 SINE B2 0 195 1 7 1145 230 194 0 56 chr6 73406597 73406626 -76110411 + polypyrimidine Low_complexity Low_complexity 42 68 0 7 1145 390 91 0 0 chr6 73406626 73406681 -76110356 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1145 230 194 0 56 chr6 73406681 73406722 -76110315 + polypyrimidine Low_complexity Low_complexity 2 41 0 7 1145 792 163 12 12 chr6 73407594 73407762 -76109275 + CT-rich Low_complexity Low_complexity 3 170 0 7 1145 531 253 51 0 chr6 73409227 73409385 -76107652 + RMER15 LTR ERVL 396 561 -14 7 1145 383 298 67 0 chr6 73409402 73409506 -76107531 - ID_B1 SINE B4 -33 191 81 7 1145 375 23 0 0 chr6 73409599 73409643 -76107394 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 7 1145 1615 245 42 90 chr6 73409754 73410248 -76106789 + Lx8 LINE L1 6975 7445 -28 7 1145 315 0 0 0 chr6 73410248 73410283 -76106754 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1145 1615 245 42 90 chr6 73410283 73410309 -76106728 + Lx8 LINE L1 7446 7470 -3 7 1145 743 335 46 68 chr6 73411393 73411919 -76105118 - MT2A LTR ERVL 0 533 20 7 1145 422 278 29 43 chr6 73411795 73411934 -76105103 - MTEa LTR MaLR -242 137 1 7 1145 686 187 55 12 chr6 73412051 73412225 -76104812 + B3 SINE B2 2 170 -23 7 1145 225 266 17 56 chr6 73412235 73412414 -76104623 + Lx9 LINE L1 7466 7637 -7 7 1145 863 123 7 0 chr6 73413004 73413158 -76103879 + (TG)n Simple_repeat Simple_repeat 2 156 0 7 1145 484 196 147 0 chr6 73413158 73413260 -76103777 - RSINE1 SINE B4 -26 139 23 7 1145 623 285 146 27 chr6 73414532 73414792 -76102245 - B4 SINE B4 0 292 2 7 1145 363 299 35 56 chr6 73415383 73415525 -76101512 - MTEa LTR MaLR 0 379 241 7 1145 484 249 32 119 chr6 73415559 73415810 -76101227 - RLTR14 LTR ERV1 0 382 154 7 1145 1747 231 19 8 chr6 73416666 73417029 -76100008 + Lx6 LINE L1 7068 7434 -26 7 1145 276 149 0 0 chr6 73417045 73417092 -76099945 + (GAA)n Simple_repeat Simple_repeat 1 47 0 7 1145 795 258 26 126 chr6 73417097 73417438 -76099599 - MTE2a LTR MaLR -54 325 19 7 1145 346 339 0 16 chr6 73418146 73418269 -76098768 + (CATA)n Simple_repeat Simple_repeat 3 123 0 7 1145 717 226 45 79 chr6 73418352 73418554 -76098483 + B3A SINE B2 1 195 -3 7 1145 234 0 0 0 chr6 73420350 73420376 -76096661 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1145 558 0 0 0 chr6 73420376 73420438 -76096599 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1145 229 214 14 54 chr6 73421143 73421217 -76095820 + ID4 SINE ID 4 74 -9 7 1145 23 0 0 0 chr6 73421810 73421833 -76095204 + AT_rich Low_complexity Low_complexity 1 23 0 7 1145 372 120 44 53 chr6 73422020 73422134 -76094903 + CT-rich Low_complexity Low_complexity 2 114 0 7 1145 772 304 71 8 chr6 73422161 73422416 -76094621 - Lx8 LINE L1 -379 7094 6824 7 1145 311 265 25 69 chr6 73422728 73422887 -76094150 + L1M5 LINE L1 2904 3055 -3091 7 1145 255 152 0 0 chr6 73422977 73423023 -76094014 + (CAA)n Simple_repeat Simple_repeat 3 48 0 7 1145 412 236 0 43 chr6 73423029 73423122 -76093915 + RMER30 DNA MER1_type 110 198 -4 7 1145 326 312 28 0 chr6 73423674 73423783 -76093254 + L1M4b LINE L1 690 801 -6533 7 1145 192 40 0 0 chr6 73423940 73423965 -76093072 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 7 1145 637 125 0 35 chr6 73423965 73424081 -76092956 - B1_Mur2 SINE Alu -32 117 6 7 1145 682 290 93 47 chr6 73424100 73424465 -76092572 + MTE2a LTR MaLR 19 400 -19 7 1145 639 239 175 71 chr6 73424466 73424782 -76092255 + L1M4b LINE L1 1022 1372 -5962 7 1145 180 77 0 0 chr6 73424782 73424808 -76092229 + (CAA)n Simple_repeat Simple_repeat 1 26 0 7 1145 639 239 175 71 chr6 73424808 73424897 -76092140 + L1M4b LINE L1 1373 1469 -5865 7 1145 527 0 16 0 chr6 73425123 73425186 -76091851 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1145 365 348 166 23 chr6 73425284 73425549 -76091488 + MLT1A1 LTR MaLR 73 375 -33 7 1145 306 0 0 0 chr6 73425937 73425971 -76091066 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1145 579 29 0 0 chr6 73426335 73426404 -76090633 + (TTC)n Simple_repeat Simple_repeat 3 71 0 7 1145 428 51 17 0 chr6 73426404 73426463 -76090574 + (CCCCCT)n Simple_repeat Simple_repeat 1 60 0 7 1145 216 0 0 0 chr6 73426545 73426569 -76090468 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1145 219 139 0 0 chr6 73427096 73427132 -76089905 + (TCC)n Simple_repeat Simple_repeat 1 36 0 7 1145 622 249 172 34 chr6 73427283 73427545 -76089492 + MTD LTR MaLR 122 419 0 7 1145 225 0 0 0 chr6 73428221 73428246 -76088791 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1145 645 207 0 0 chr6 73428246 73428367 -76088670 - RSINE1 SINE B4 -41 124 4 7 1145 319 331 20 0 chr6 73429049 73429197 -76087840 - MER117 DNA MER1_type -39 158 8 7 1145 1296 175 188 47 chr6 73429833 73430217 -76086820 - RMER10A LTR ERVL -2 440 3 7 1145 271 323 125 51 chr6 73430355 73430531 -76086506 - MIRc SINE MIR -33 235 47 7 1145 1192 43 0 0 chr6 73431397 73431537 -76085500 + B1_Mus1 SINE Alu 3 142 -6 7 1145 22 0 0 0 chr6 73431683 73431705 -76085332 + AT_rich Low_complexity Low_complexity 1 22 0 7 1145 951 168 94 25 chr6 73431708 73431910 -76085127 - B3 SINE B2 0 216 1 7 1145 2788 56 14 3 chr6 73431916 73432275 -76084762 + L1_Mus2 LINE L1 6204 6566 0 7 1145 589 181 320 7 chr6 73432307 73432457 -76084580 - B3A SINE B2 -1 197 1 7 1145 821 263 70 4 chr6 73432459 73432730 -76084307 - L1MA6 LINE L1 -49 6251 5963 7 1145 402 134 0 0 chr6 73433241 73433308 -76083729 + (CAT)n Simple_repeat Simple_repeat 2 68 0 7 1145 327 309 0 0 chr6 73433310 73433391 -76083646 - ID4 SINE ID -1 82 2 7 1145 811 198 217 25 chr6 73433431 73433675 -76083362 - Lx9 LINE L1 -5 7639 7349 7 1145 679 242 175 52 chr6 73434322 73434571 -76082466 - Lx8 LINE L1 -42 7431 7157 7 1145 1076 234 161 48 chr6 73434571 73434944 -76082093 + MTD LTR MaLR 5 419 0 7 1145 679 242 175 52 chr6 73434944 73435003 -76082034 - Lx8 LINE L1 -317 7156 7086 7 1145 242 164 18 0 chr6 73435021 73435076 -76081961 + C-rich Low_complexity Low_complexity 1 56 0 7 1145 570 184 92 0 chr6 73435081 73435190 -76081847 - B1_Mur2 SINE Alu -30 119 1 8 1145 261 273 53 118 chr6 73435190 73435274 -76081763 - MT2B LTR ERVL -441 160 89 8 1145 487 165 71 35 chr6 73435419 73435532 -76081505 - B1_Mus1 SINE Alu -29 119 3 8 1145 435 229 132 62 chr6 73436917 73437185 -76079852 + ORR1E LTR MaLR 65 370 -9 8 1145 288 169 0 0 chr6 73437467 73437544 -76079493 + GA-rich Low_complexity Low_complexity 2 78 0 8 1145 375 121 0 0 chr6 73437581 73437639 -76079398 + (AGGGGG)n Simple_repeat Simple_repeat 5 62 0 8 1145 374 213 256 7 chr6 73437676 73437813 -76079224 + B3A SINE B2 1 171 -27 8 1145 2480 28 16 0 chr6 73438202 73438520 -76078517 + IAPEY2_LTR LTR ERVK 32 354 -3 8 1145 217 256 158 0 chr6 73438807 73438889 -76078148 - MIR SINE MIR -123 139 45 8 1145 340 314 14 21 chr6 73439089 73439229 -76077808 - MLT1A1 LTR MaLR -5 403 265 8 1145 333 0 0 0 chr6 73439253 73439290 -76077747 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1145 564 56 0 0 chr6 73440378 73440450 -76076587 + (CTG)n Simple_repeat Simple_repeat 1 72 0 8 1145 205 194 0 0 chr6 73441094 73441130 -76075907 + (TATG)n Simple_repeat Simple_repeat 1 36 0 8 1145 954 280 28 35 chr6 73441148 73441437 -76075600 - B4 SINE B4 -4 288 2 8 1145 548 256 16 8 chr6 73441547 73441673 -76075364 + B1_Mur1 SINE Alu 6 132 -17 8 1145 570 29 0 0 chr6 73441673 73441741 -76075296 + (GA)n Simple_repeat Simple_repeat 1 68 0 8 1145 249 366 21 0 chr6 73441979 73442072 -76074965 + MER20B DNA MER1_type 79 173 -610 8 1145 1057 301 139 16 chr6 73442801 73443354 -76073683 + Tigger9b DNA MER2_type 1 621 -3 8 1145 672 221 36 72 chr6 73443507 73443722 -76073315 + B3 SINE B2 2 187 -6 8 1145 1018 83 0 0 chr6 73443994 73444127 -76072910 - L1_Mus3 LINE L1 -346 6292 6160 8 1145 2664 76 6 8 chr6 73444127 73444487 -76072550 + L1_Mus3 LINE L1 6276 6634 -4 8 1145 1078 246 17 41 chr6 73444857 73445150 -76071887 + B4A SINE B4 3 288 -4 8 1145 360 0 0 0 chr6 73445159 73445199 -76071838 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1145 270 0 0 0 chr6 73445200 73445230 -76071807 + (GA)n Simple_repeat Simple_repeat 1 30 0 8 1145 429 260 122 30 chr6 73445548 73445679 -76071358 - Lx8 LINE L1 -264 7209 7067 8 1145 334 259 50 71 chr6 73446205 73446346 -76070691 + RMER15 LTR ERVL 1 138 -437 8 1145 564 325 76 48 chr6 73446344 73446635 -76070402 + RMER15 LTR ERVL 275 573 -2 8 1145 774 211 81 15 chr6 73446670 73446867 -76070170 - Lx5 LINE L1 0 7050 6841 8 1145 231 304 136 10 chr6 73447046 73447149 -76069888 - L2a LINE L2 0 3426 3311 8 1145 1222 318 58 11 chr6 73448088 73448537 -76068500 - MER70A LTR ERVL -2 470 1 8 1145 499 287 104 49 chr6 73448825 73449008 -76068029 - ID_B1 SINE B4 -21 203 11 8 1145 990 186 180 26 chr6 73449968 73450300 -76066737 - Lx5 LINE L1 0 7050 6647 8 1145 5141 129 99 35 chr6 73450300 73451316 -76065721 - RLTR25A LTR ERVK 0 1103 23 8 1145 619 190 0 0 chr6 73451316 73451416 -76065621 - Lx5 LINE L1 -402 6648 6549 8 1145 1255 173 0 0 chr6 73451441 73451632 -76065405 + Lx5 LINE L1 6188 6378 -672 8 1145 36156 35 0 0 chr6 73451625 73457067 -76059970 + Lx5 LINE L1 50 5589 -297 8 1145 9098 7 0 3 chr6 73457067 73458066 -76058971 + L1Md_T LINE L1 5587 6582 0 8 1145 36156 159 12 6025 chr6 73458066 73458221 -76058816 + Lx5 LINE L1 5590 5593 -293 8 1145 549 271 90 0 chr6 73458703 73458858 -76058179 - B3 SINE B2 -2 214 46 8 1145 201 232 0 0 chr6 73459976 73460045 -76056992 + CT-rich Low_complexity Low_complexity 2 70 0 8 1145 686 228 16 53 chr6 73460290 73460480 -76056557 + L1MC2 LINE L1 6074 6256 -88 8 1145 770 261 36 5 chr6 73460652 73460864 -76056173 + B3A SINE B2 1 215 -1 8 1145 497 138 0 12 chr6 73460918 73460999 -76056038 - L1_Mur1 LINE L1 -1134 4743 4664 8 1145 204 67 0 0 chr6 73460999 73461029 -76056008 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 8 1145 776 110 6 109 chr6 73461285 73461459 -76055578 - L1_Mur1 LINE L1 -1206 4680 4525 8 1145 7201 86 41 2 chr6 73461460 73462467 -76054570 + L1_Mur1 LINE L1 4742 5787 -99 8 1145 779 98 0 0 chr6 73462465 73462577 -76054460 - Lx2A1 LINE L1 -1203 5805 5694 8 1145 1999 140 100 0 chr6 73462577 73462928 -76054109 + Lx3B LINE L1 6587 6972 -1 8 1145 342 274 0 17 chr6 73462928 73462946 -76054091 - L1MC3 LINE L1 -2059 5726 5709 8 1145 472 214 116 23 chr6 73462991 73463120 -76053917 - B3 SINE B2 -10 206 66 8 1145 301 79 0 0 chr6 73463654 73463692 -76053345 + Lx3C LINE L1 6640 6677 -299 8 1145 2471 78 0 26 chr6 73464413 73464755 -76052282 - Lx LINE L1 -2 6652 6320 8 1145 3495 73 46 19 chr6 73464755 73465115 -76051922 - MusHAL1 LINE L1 -666 2046 1685 8 1145 789 90 0 0 chr6 73465115 73465226 -76051811 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 8 1145 3495 73 46 19 chr6 73465226 73465383 -76051654 - MusHAL1 LINE L1 -1028 1684 1517 8 1145 812 258 5 6 chr6 73465389 73465612 -76051425 - L1VL4 LINE L1 -3070 490 226 8 1145 2683 43 65 0 chr6 73465761 73466086 -76050951 - ORR1A1 LTR MaLR 0 346 1 8 1145 2586 82 12 3 chr6 73466305 73466648 -76050389 - ORR1A1 LTR MaLR 0 346 1 8 1145 537 185 183 8 chr6 73466960 73467080 -76049957 - B1_Mur3 SINE Alu -1 148 8 8 1145 285 314 23 0 chr6 73467148 73467234 -76049803 + PB1D10 SINE Alu 7 94 -23 8 1145 1094 95 0 0 chr6 73467655 73467802 -76049235 - B1_Mus1 SINE Alu 0 148 2 8 1145 741 218 19 6 chr6 73468696 73468853 -76048184 + B3A SINE B2 2 160 -38 8 1145 229 9 8 152 chr6 73470003 73470069 -76046968 + (TAGTG)n Simple_repeat Simple_repeat 5 60 0 8 1145 1284 44 0 0 chr6 73470069 73470228 -76046809 + (CTAGGG)n Simple_repeat Simple_repeat 3 161 0 8 1145 229 9 8 152 chr6 73470228 73470286 -76046751 + (TAGTG)n Simple_repeat Simple_repeat 4 54 0 8 1145 270 250 114 60 chr6 73470515 73470664 -76046373 - B4A SINE B4 -2 290 134 8 1145 733 100 8 16 chr6 73470749 73470871 -76046166 + (TCTA)n Simple_repeat Simple_repeat 4 124 0 8 1145 778 137 0 0 chr6 73470871 73470995 -76046042 - B1_Mus2 SINE Alu -1 146 23 8 1145 186 43 0 0 chr6 73471015 73471038 -76045999 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 8 1145 210 91 0 0 chr6 73471217 73471250 -76045787 + (TA)n Simple_repeat Simple_repeat 2 34 0 8 1145 328 333 18 0 chr6 73471337 73471448 -76045589 + PB1D10 SINE Alu 1 113 -4 8 1145 477 0 0 0 chr6 73472510 73472563 -76044474 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1145 239 324 119 28 chr6 73473028 73473325 -76043712 - MLT1E3 LTR MaLR -28 599 272 8 1145 689 245 13 0 chr6 73473466 73473621 -76043416 + Lx7 LINE L1 7144 7300 -396 8 1145 634 266 85 0 chr6 73473778 73473977 -76043060 - B3 SINE B2 0 216 1 8 1145 272 345 9 0 chr6 73473987 73474097 -76042940 - MLT1E3 LTR MaLR -421 203 93 8 1145 343 263 14 55 chr6 73474690 73474835 -76042202 + CT-rich Low_complexity Low_complexity 2 140 0 8 1145 324 170 0 0 chr6 73475375 73475428 -76041609 + Lx8 LINE L1 7076 7128 -345 8 1145 1952 137 20 64 chr6 73475787 73476130 -76040907 - ORR1A4 LTR MaLR -1 328 1 8 1145 9134 151 45 78 chr6 73476130 73478118 -76038919 - ORR1A4-int LTR MaLR 0 1963 41 8 1145 3363 59 0 12 chr6 73478118 73478530 -76038507 + MTB_Mm LTR MaLR 1 407 0 8 1145 9134 151 45 78 chr6 73478530 73478570 -76038467 - ORR1A4-int LTR MaLR -1923 40 1 8 1145 439 36 0 0 chr6 73478570 73478626 -76038411 - ORR1A4 LTR MaLR 0 329 274 8 1145 1590 136 0 74 chr6 73479253 73479578 -76037459 - ORR1A4 LTR MaLR -28 301 1 8 1145 364 338 66 37 chr6 73479738 73479981 -76037056 - LTR85b LTR Gypsy? -268 516 267 8 1145 259 125 0 0 chr6 73480582 73480622 -76036415 + Lx8 LINE L1 7424 7463 -10 8 1145 218 375 47 19 chr6 73480630 73480736 -76036301 - PB1D10 SINE Alu -8 109 1 8 1145 474 340 25 6 chr6 73480736 73480817 -76036220 - ID SINE ID -140 84 1 8 1145 369 0 0 0 chr6 73481106 73481147 -76035890 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 8 1145 767 273 169 20 chr6 73481170 73481424 -76035613 + B4A SINE B4 1 292 0 8 1145 999 99 0 0 chr6 73481443 73481615 -76035422 + (CA)n Simple_repeat Simple_repeat 1 172 0 8 1145 189 74 0 0 chr6 73481620 73481647 -76035390 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 8 1145 1952 195 13 16 chr6 73481664 73482044 -76034993 - RLTR30 LTR ERV1 0 379 1 8 1145 232 299 56 4 chr6 73482912 73483022 -76034015 - MIR SINE MIR -45 223 109 8 1145 446 267 77 29 chr6 73483315 73483485 -76033552 - FordPrefect_a DNA Tip100 -1 507 330 8 1145 312 253 45 11 chr6 73483550 73483638 -76033399 - FordPrefect_a DNA Tip100 -396 112 22 8 1145 213 355 35 48 chr6 73483897 73484042 -76032995 - MIR SINE MIR -14 248 106 8 1145 345 376 12 6 chr6 73484099 73484265 -76032772 - MER5B DNA MER1_type -6 172 6 8 1145 23 0 0 0 chr6 73484873 73484896 -76032141 + AT_rich Low_complexity Low_complexity 1 23 0 8 1145 381 312 125 40 chr6 73485035 73485356 -76031681 + ORR1E LTR MaLR 4 351 -8 8 1145 441 221 53 9 chr6 73485646 73485760 -76031277 + B1_Mur1 SINE Alu 4 122 -27 8 1145 23 0 0 0 chr6 73486023 73486046 -76030991 + AT_rich Low_complexity Low_complexity 1 23 0 8 1145 7703 59 23 2 chr6 73486059 73487148 -76029889 - L1_Mus2 LINE L1 0 6566 5456 8 1145 423 98 0 0 chr6 73487194 73487255 -76029782 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1145 683 266 118 52 chr6 73487650 73487920 -76029117 + B4A SINE B4 3 290 -2 8 1145 192 152 0 0 chr6 73487938 73487971 -76029066 + (CATA)n Simple_repeat Simple_repeat 4 36 0 8 1145 225 154 0 0 chr6 73487973 73488012 -76029025 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 8 1145 249 301 152 14 chr6 73488221 73488359 -76028678 + MLT1B LTR MaLR 226 382 -8 8 1145 423 56 0 0 chr6 73489658 73489712 -76027325 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1145 3505 135 156 5 chr6 73490004 73490614 -76026423 + L1_Mur2 LINE L1 205 906 -5806 8 1145 322 93 26 26 chr6 73490617 73490694 -76026343 + Lx4B LINE L1 6974 7050 -8 8 1145 474 65 0 0 chr6 73490707 73490769 -76026268 + (CCAA)n Simple_repeat Simple_repeat 2 63 0 8 1145 294 29 0 0 chr6 73490901 73490936 -76026101 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1145 1730 185 16 32 chr6 73492898 73493173 -76023864 - ORR1D1 LTR MaLR -4 370 99 8 1145 1990 158 91 0 chr6 73493173 73493534 -76023503 + ORR1B1 LTR MaLR 1 394 0 9 1145 1730 185 16 32 chr6 73493534 73493632 -76023405 - ORR1D1 LTR MaLR -276 98 3 8 1145 1179 217 63 7 chr6 73493826 73494127 -76022910 + Lx9 LINE L1 7281 7598 -46 9 1145 390 42 0 0 chr6 73494142 73494190 -76022847 + (CAA)n Simple_repeat Simple_repeat 3 50 0 9 1145 1090 288 147 0 chr6 73494450 73494818 -76022219 - Lx8 LINE L1 -4 7469 7048 9 1145 260 302 49 28 chr6 73494921 73495064 -76021973 + MLT1H LTR MaLR 12 157 -392 9 1145 474 155 23 23 chr6 73495534 73495620 -76021417 + B3 SINE B2 8 93 -123 9 1145 180 135 0 0 chr6 73495620 73495657 -76021380 + (CAA)n Simple_repeat Simple_repeat 2 38 0 9 1145 333 0 0 0 chr6 73495657 73495694 -76021343 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1145 23 54 0 0 chr6 73495701 73495738 -76021299 + AT_rich Low_complexity Low_complexity 1 37 0 9 1145 8878 19 0 0 chr6 73495755 73497094 -76019943 - L1Md_A LINE L1 -1 6581 5243 9 1145 8619 25 0 0 chr6 73497091 73498431 -76018606 - L1Md_A LINE L1 0 6582 5243 9 1145 8577 28 0 0 chr6 73498428 73500000 -76017037 - L1Md_T LINE L1 0 6582 5011 9 1145 29568 50 19 6 chr6 73500000 73504647 -76012390 - L1Md_F LINE L1 -873 5010 298 1 1145 2097 99 16 19 chr6 73504651 73504961 -76012076 - Lx LINE L1 -14 6640 6332 2 1145 622 231 16 0 chr6 73504961 73505082 -76011955 + B3 SINE B2 93 215 -1 3 1145 356 145 159 0 chr6 73505147 73505216 -76011821 + Lx8 LINE L1 7072 7151 -322 4 1145 1144 204 5 14 chr6 73505223 73505442 -76011595 - MTC LTR MaLR -8 413 197 5 1145 387 0 0 0 chr6 73505442 73505485 -76011552 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1145 4196 74 56 8 chr6 73505506 73506095 -76010942 - Lx3_Mus LINE L1 0 7009 6393 7 1145 326 109 16 0 chr6 73506120 73506184 -76010853 - L1_Mus3 LINE L1 -6 6632 6568 8 1145 480 63 0 0 chr6 73506184 73506247 -76010790 + L1_Mur1 LINE L1 5515 5577 -309 9 1145 1214 71 0 6 chr6 73506248 73506418 -76010619 - Lx3_Mus LINE L1 -601 6408 6240 7 1145 1159 184 19 0 chr6 73506424 73506631 -76010406 - MTC LTR MaLR -210 211 1 5 1145 642 252 69 36 chr6 73506661 73506937 -76010100 + Lx8 LINE L1 7184 7468 -5 4 1145 249 299 62 14 chr6 73507445 73507591 -76009446 - L1MA10 LINE L1 -7 6327 6175 1 1145 291 203 0 0 chr6 73507626 73507690 -76009347 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1145 4649 49 0 9 chr6 73507724 73508304 -76008733 - L1_Mus1 LINE L1 -2 6565 5991 1 1145 1891 93 0 15 chr6 73508528 73508802 -76008235 - L1Md_F2 LINE L1 -2 6580 6311 1 1145 417 20 0 0 chr6 73509918 73509968 -76007069 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1145 283 100 50 0 chr6 73511805 73511865 -76005172 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 1 1145 1072 48 7 14 chr6 73513253 73513401 -76003636 + (TCTA)n Simple_repeat Simple_repeat 1 147 0 1 1145 635 81 0 10 chr6 73514838 73514938 -76002099 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 1 1145 305 351 11 0 chr6 73514947 73515041 -76001996 - ID_B1 SINE B4 -28 196 102 1 1145 276 320 53 0 chr6 73514982 73515057 -76001980 - B1F2 SINE Alu -66 83 5 1 1145 366 68 0 0 chr6 73515306 73515365 -76001672 - Lx LINE L1 0 6654 6596 2 1145 7287 121 67 4 chr6 73515705 73517774 -75999263 - Lx LINE L1 0 6654 4423 2 1145 784 265 70 0 chr6 73517921 73518121 -75998916 + MTEa LTR MaLR 162 375 -4 2 1145 278 312 13 0 chr6 73518829 73518906 -75998131 + RMER30 DNA MER1_type 125 202 0 2 1145 1035 290 35 0 chr6 73518991 73519246 -75997791 + B4 SINE B4 7 270 -22 2 1145 504 59 0 0 chr6 73519298 73519366 -75997671 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1145 231 36 0 0 chr6 73519366 73519394 -75997643 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1145 325 261 11 0 chr6 73519627 73519715 -75997322 + CT-rich Low_complexity Low_complexity 3 91 0 2 1145 261 0 0 0 chr6 73520148 73520177 -75996860 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1145 321 26 0 0 chr6 73520177 73520214 -75996823 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1145 351 0 0 0 chr6 73520873 73520912 -75996125 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1145 247 352 11 11 chr6 73521243 73521335 -75995702 - MER5B DNA MER1_type -61 117 26 3 1145 531 100 130 0 chr6 73522121 73522221 -75994816 - L1Md_F2 LINE L1 -14 6568 6456 3 1145 7903 31 0 0 chr6 73522678 73523643 -75993394 + L1Md_T LINE L1 5658 6582 0 3 1145 270 0 0 0 chr6 73523759 73523789 -75993248 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1145 282 87 0 0 chr6 73523893 73523939 -75993098 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1145 506 277 24 128 chr6 73523942 73524153 -75992884 - B4 SINE B4 -40 252 64 3 1145 310 302 121 28 chr6 73524227 73524656 -75992381 - L1MD LINE L1 -1371 4775 4307 3 1145 657 311 47 27 chr6 73526196 73526454 -75990583 + RMER15 LTR ERVL 296 558 -17 3 1145 216 350 39 10 chr6 73526625 73526729 -75990308 + MIRb SINE MIR 144 250 -18 3 1145 367 331 29 34 chr6 73526981 73527156 -75989881 + MTD LTR MaLR 1 174 -245 4 1145 1849 243 19 28 chr6 73527074 73527516 -75989521 + MT2A LTR ERVL 63 594 -7 4 1145 342 275 60 82 chr6 73527861 73527878 -75989159 + YREP_Mm Unknown Unknown 153 224 -1588 4 1145 870 182 0 0 chr6 73527878 73528021 -75989016 - ID_B1 SINE B4 0 224 82 4 1145 342 275 60 82 chr6 73528021 73528043 -75988994 + YREP_Mm Unknown Unknown 225 330 -1482 4 1145 184 402 62 9 chr6 73528647 73528858 -75988179 + L2 LINE L2 2556 2777 -642 4 1145 258 32 0 0 chr6 73529586 73529617 -75987420 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1145 183 42 0 0 chr6 73530521 73530545 -75986492 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1145 658 200 45 77 chr6 73530758 73530980 -75986057 + Lx7 LINE L1 5812 6026 -1670 4 1146 661 278 206 35 chr6 73531394 73531681 -75985356 + MER2 DNA MER2_type 7 342 -3 4 1146 777 11 0 0 chr6 73531915 73532005 -75985032 + (CA)n Simple_repeat Simple_repeat 2 91 0 4 1146 701 191 16 16 chr6 73532720 73532848 -75984189 - B1_Mur2 SINE Alu -5 144 17 5 1146 685 254 77 63 chr6 73533023 73533309 -75983728 - B4 SINE B4 0 292 3 5 1146 208 194 60 0 chr6 73534362 73534429 -75982608 + GA-rich Low_complexity Low_complexity 4 74 0 5 1146 1674 249 51 36 chr6 73534896 73535399 -75981638 + Lx6 LINE L1 6477 7364 -96 5 1146 216 0 0 0 chr6 73535399 73535423 -75981614 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1146 1674 248 51 36 chr6 73535423 73535496 -75981541 + Lx6 LINE L1 7365 7429 -31 5 1146 652 332 5 11 chr6 73535893 73536079 -75980958 + B3A SINE B2 9 193 -5 5 1146 32 43 0 0 chr6 73536080 73536126 -75980911 + AT_rich Low_complexity Low_complexity 1 46 0 5 1146 541 273 110 61 chr6 73536267 73536595 -75980442 - Lx9 LINE L1 -354 7290 6947 5 1146 881 159 73 6 chr6 73536671 73536848 -75980189 + Lx2 LINE L1 6808 6996 -1 5 1146 307 310 31 8 chr6 73536892 73537022 -75980015 + Lx9 LINE L1 7302 7434 -210 5 1146 1013 238 188 33 chr6 73537083 73537504 -75979533 + Lx8 LINE L1 6987 7472 -1 6 1146 513 267 13 39 chr6 73539440 73539596 -75977441 - RMER15 LTR ERVL -152 423 272 6 1146 22 0 0 0 chr6 73539829 73539851 -75977186 + AT_rich Low_complexity Low_complexity 1 22 0 6 1146 4790 38 7 8 chr6 73539851 73540439 -75976598 - L1Md_F3 LINE L1 0 6584 5998 6 1146 4008 40 0 0 chr6 73540453 73540928 -75976109 - L1Md_T LINE L1 -1 6581 6107 6 1146 452 18 18 0 chr6 73542126 73542183 -75974854 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1146 287 294 24 0 chr6 73542759 73542838 -75974199 + MTE2b LTR MaLR 13 97 -282 6 1146 226 171 112 50 chr6 73542855 73542935 -75974102 - Lx8 LINE L1 0 7473 7389 6 1146 492 326 33 20 chr6 73542947 73543097 -75973940 - ID_B1 SINE B4 -71 153 2 6 1146 25 51 0 0 chr6 73543273 73543312 -75973725 + AT_rich Low_complexity Low_complexity 1 39 0 6 1146 300 356 49 43 chr6 73543312 73543497 -75973540 + L2c LINE L2 2969 3154 -233 7 1146 478 241 26 9 chr6 73543607 73543720 -75973317 + PB1D9 SINE Alu 5 119 -1 7 1146 7539 121 61 4 chr6 73543961 73545282 -75971755 + Lx3C LINE L1 5561 6975 -1 7 1146 877 232 66 0 chr6 73545552 73545750 -75971287 - B3 SINE B2 -5 211 1 7 1146 23 33 0 0 chr6 73545750 73545780 -75971257 + AT_rich Low_complexity Low_complexity 1 30 0 7 1146 239 267 11 11 chr6 73545783 73545874 -75971163 - HAL1b LINE L1 -283 1726 1636 7 1146 5184 118 19 23 chr6 73546230 73547060 -75969977 + Lx3C LINE L1 6148 6974 -2 7 1146 867 276 10 34 chr6 73547160 73547366 -75969671 - ID_B1 SINE B4 -18 206 6 7 1146 2142 154 18 79 chr6 73549085 73549479 -75967558 - ORR1C1 LTR MaLR -8 370 1 7 1146 432 0 0 0 chr6 73549530 73549578 -75967459 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1146 844 248 0 0 chr6 73549583 73549740 -75967297 - B3A SINE B2 -38 160 4 8 1146 182 195 0 47 chr6 73549826 73549869 -75967168 + L2b LINE L2 3102 3142 -233 8 1146 1080 302 54 29 chr6 73550014 73550532 -75966505 - Lx5 LINE L1 -14 7036 6506 8 1146 333 0 0 0 chr6 73550932 73550969 -75966068 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1146 581 225 77 26 chr6 73551275 73551430 -75965607 - B3 SINE B2 -5 211 49 8 1146 249 279 89 20 chr6 73552408 73552509 -75964528 + MLT1A0 LTR MaLR 249 390 0 8 1146 1194 258 33 16 chr6 73552891 73553258 -75963779 + MTEa LTR MaLR 3 375 -4 8 1146 207 349 36 9 chr6 73553478 73553588 -75963449 + L2 LINE L2 2505 2617 -802 8 1146 236 281 147 61 chr6 73554695 73554858 -75962179 - MLT1J1 LTR MaLR -9 435 259 8 1146 7832 43 9 0 chr6 73555209 73556917 -75960120 - L1Md_F2 LINE L1 -2 6580 4858 8 1146 276 137 0 0 chr6 73557071 73557122 -75959915 + (CAAAC)n Simple_repeat Simple_repeat 3 53 0 9 1146 308 219 73 8 chr6 73557236 73557360 -75959677 + Lx7 LINE L1 7565 7696 0 9 1146 378 0 0 0 chr6 73557429 73557471 -75959566 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1146 275 277 42 21 chr6 73557906 73558002 -75959035 + B3 SINE B2 112 209 -7 9 1146 3297 101 173 83 chr6 73558160 73558849 -75958188 - RMER17A LTR ERVK 0 751 1 9 1146 2653 138 9 33 chr6 73559095 73559552 -75957485 + Lx2 LINE L1 6550 6995 -2 9 1146 293 339 9 0 chr6 73559981 73560093 -75956944 - Lx8 LINE L1 -183 7290 7178 9 1146 900 59 0 0 chr6 73560715 73560834 -75956203 + (TCCCC)n Simple_repeat Simple_repeat 5 123 0 9 1146 272 291 23 0 chr6 73560841 73560927 -75956110 + CT-rich Low_complexity Low_complexity 4 91 0 9 1146 798 202 96 20 chr6 73562378 73562575 -75954462 - B3 SINE B2 -3 213 2 9 1146 867 271 35 43 chr6 73562620 73562878 -75954159 + B4 SINE B4 1 256 -36 1 1146 364 82 33 0 chr6 73563607 73563668 -75953369 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 1 1146 1037 91 35 0 chr6 73563668 73563811 -75953226 - B1_Mus1 SINE Alu 0 148 1 1 1146 312 399 93 17 chr6 73564092 73564383 -75952654 - HAL1 LINE L1 -800 1707 1395 1 1146 4032 99 20 3 chr6 73564511 73565111 -75951926 + MusHAL1 LINE L1 4 613 -2741 1 1146 27 0 0 0 chr6 73565118 73565145 -75951892 + AT_rich Low_complexity Low_complexity 1 27 0 1 1146 7682 45 2 2 chr6 73565173 73566156 -75950881 - L1Md_F2 LINE L1 -13 6569 5587 1 1146 2026 49 10 0 chr6 73566179 73566507 -75950530 + MusHAL1 LINE L1 593 924 -2429 1 1146 405 301 32 0 chr6 73567233 73567393 -75949644 - L1MC1 LINE L1 -136 6197 6034 1 1146 603 12 24 12 chr6 73567866 73567951 -75949086 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 1 1146 414 290 160 45 chr6 73568009 73568370 -75948667 - L1MA8 LINE L1 -58 6834 6430 1 1146 609 14 0 0 chr6 73568370 73568440 -75948597 + (TTTC)n Simple_repeat Simple_repeat 4 73 0 1 1146 414 290 160 45 chr6 73568440 73568454 -75948583 - L1MA8 LINE L1 -463 6429 6416 1 1146 1005 246 34 34 chr6 73568660 73568988 -75948049 - RLTR15 LTR ERVK -31 328 1 1 1146 1897 65 0 8 chr6 73569227 73569474 -75947563 - L1Md_F2 LINE L1 -12 6570 6326 1 1146 2713 25 0 0 chr6 73569474 73569801 -75947236 + L1Md_F2 LINE L1 5598 5924 -658 1 1146 366 136 0 0 chr6 73570131 73570212 -75946825 + (TCCA)n Simple_repeat Simple_repeat 4 84 0 1 1146 322 272 51 18 chr6 73570311 73570430 -75946607 - RSINE1 SINE B4 -168 124 2 1 1146 410 296 84 62 chr6 73570431 73571100 -75945937 - L1MA8 LINE L1 -698 6215 5534 1 1146 692 259 85 15 chr6 73571256 73571456 -75945581 - B3 SINE B2 -1 215 2 1 1146 281 272 52 0 chr6 73571475 73571611 -75945426 - L1MA8 LINE L1 -6435 172 30 1 1146 369 0 0 0 chr6 73572669 73572710 -75944327 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1146 467 165 50 0 chr6 73572726 73572847 -75944190 + Lx9 LINE L1 7518 7644 0 1 1146 211 164 62 62 chr6 73573224 73573289 -75943748 + MIRb SINE MIR 113 177 -91 1 1146 1934 251 71 10 chr6 73573413 73573908 -75943129 + MT2A LTR ERVL 9 533 0 1 1146 197 278 92 34 chr6 73574404 73574523 -75942514 + MIR SINE MIR 26 151 -57 1 1146 200 326 152 28 chr6 73574865 73575114 -75941923 + MIRc SINE MIR 3 266 -2 1 1146 2142 118 16 92 chr6 73575538 73575920 -75941117 - ORR1B1 LTR MaLR 0 394 42 1 1146 345 291 162 12 chr6 73575968 73576135 -75940902 - MER58B DNA MER1_type 0 341 150 1 1146 44 35 0 0 chr6 73576953 73577011 -75940026 + AT_rich Low_complexity Low_complexity 1 58 0 1 1146 1120 221 58 0 chr6 73577015 73577255 -75939782 - Lx9 LINE L1 -1078 6566 6313 1 1146 285 275 248 40 chr6 73577329 73577454 -75939583 - B3 SINE B2 -30 186 36 1 1146 4510 36 0 0 chr6 73577492 73578026 -75939011 - L1Md_A LINE L1 0 6582 6049 1 1146 2761 27 0 0 chr6 73578026 73578361 -75938676 + L1_Mm LINE L1 5451 5785 -98 1 1146 441 54 0 0 chr6 73579025 73579081 -75937956 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1 1146 770 315 57 24 chr6 73579386 73579792 -75937245 + Lx8 LINE L1 5979 6385 -1088 1 1146 216 0 0 0 chr6 73579812 73579836 -75937201 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1146 504 0 0 0 chr6 73579836 73579891 -75937146 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1146 1120 70 0 7 chr6 73580060 73580203 -75936834 + B1_Mus1 SINE Alu 3 144 -4 1 1146 614 213 0 14 chr6 73580255 73580393 -75936644 - Lx8 LINE L1 -371 7102 6967 1 1146 555 313 8 0 chr6 73580779 73580913 -75936124 + RSINE1 SINE B4 2 136 -29 1 1146 1049 90 14 0 chr6 73582229 73582373 -75934664 - B1_Mus1 SINE Alu 0 148 3 1 1146 458 373 69 14 chr6 73584344 73584635 -75932402 + MLT1I LTR MaLR 59 365 -46 1 1146 261 0 0 0 chr6 73584897 73584926 -75932111 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1146 345 93 0 0 chr6 73584926 73584979 -75932058 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1146 688 256 156 27 chr6 73585000 73585257 -75931780 - B4A SINE B4 -2 290 1 1 1146 360 0 0 0 chr6 73585965 73586005 -75931032 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1146 742 201 19 0 chr6 73586735 73586889 -75930148 - Lx9 LINE L1 -463 7181 7025 1 1146 491 339 0 0 chr6 73586900 73587021 -75930016 + RSINE1 SINE B4 4 124 -41 1 1146 501 32 0 0 chr6 73587021 73587084 -75929953 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1146 201 293 0 17 chr6 73587240 73587299 -75929738 + CT-rich Low_complexity Low_complexity 3 60 0 1 1146 478 200 111 8 chr6 73587607 73587733 -75929304 - Lx9 LINE L1 -603 7041 6903 1 1146 26 50 0 0 chr6 73587739 73587779 -75929258 + AT_rich Low_complexity Low_complexity 1 40 0 1 1146 1053 102 7 0 chr6 73587885 73588032 -75929005 - B1_Mus1 SINE Alu 0 148 1 1 1146 300 319 16 101 chr6 73588255 73588384 -75928653 + RSINE1 SINE B4 3 120 -45 1 1146 1941 200 81 16 chr6 73588400 73588847 -75928190 + Lx7 LINE L1 6551 7026 -670 1 1146 267 103 0 0 chr6 73588864 73588903 -75928134 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 1 1146 898 109 7 42 chr6 73588971 73589115 -75927922 - B1_Mus1 SINE Alu -4 144 6 1 1146 447 254 63 0 chr6 73589120 73589246 -75927791 + Lx7 LINE L1 7180 7313 -383 1 1146 198 0 0 0 chr6 73590697 73590719 -75926318 + (TCCTG)n Simple_repeat Simple_repeat 2 23 0 1 1146 735 306 18 37 chr6 73590884 73591101 -75925936 + B3A SINE B2 2 214 -2 1 1146 29 47 0 0 chr6 73591104 73591147 -75925890 + AT_rich Low_complexity Low_complexity 1 43 0 1 1146 334 330 8 43 chr6 73591150 73591267 -75925770 - MER54A LTR ERVL -40 861 749 1 1146 2317 94 33 3 chr6 73591568 73591900 -75925137 + RLTR1D LTR ERV1 1 342 -263 1 1146 1635 160 26 60 chr6 73591920 73592267 -75924770 - RLTR9C LTR ERVK -58 335 1 1 1146 411 291 45 23 chr6 73592412 73592588 -75924449 - MER53 DNA hAT -13 180 1 1 1146 245 308 71 71 chr6 73592622 73592804 -75924233 - LTR37A LTR ERV1 -174 252 71 1 1146 358 229 8 8 chr6 73592854 73592977 -75924060 + CT-rich Low_complexity Low_complexity 3 125 0 1 1146 204 135 27 0 chr6 73593674 73593711 -75923326 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 1 1146 985 206 25 10 chr6 73593934 73594135 -75922902 - B3 SINE B2 0 216 13 1 1146 282 319 10 52 chr6 73594167 73594263 -75922774 - MTEa LTR MaLR -31 348 257 1 1146 1096 76 0 7 chr6 73594265 73594410 -75922627 + B1_Mm SINE Alu 2 145 -2 1 1146 240 0 75 0 chr6 73594410 73594450 -75922587 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1146 375 131 31 102 chr6 73594528 73594656 -75922381 - Lx LINE L1 -55 6599 6481 1 1146 1143 68 7 0 chr6 73595810 73595956 -75921081 - B1_Mm SINE Alu 0 147 1 1 1146 1003 245 13 26 chr6 73596114 73596419 -75920618 - ORR1D2 LTR MaLR -2 368 8 1 1146 1086 251 30 70 chr6 73597623 73597995 -75919042 - ORR1E LTR MaLR 0 359 3 1 1146 762 147 0 0 chr6 73598311 73598440 -75918597 + (TTCC)n Simple_repeat Simple_repeat 4 132 0 1 1146 231 256 0 0 chr6 73598440 73598483 -75918554 + polypyrimidine Low_complexity Low_complexity 1 43 0 1 1146 1189 49 7 0 chr6 73598483 73598627 -75918410 - B1_Mus1 SINE Alu 0 148 4 1 1146 812 306 30 21 chr6 73598628 73598862 -75918175 + MTEa LTR MaLR 77 312 -67 1 1146 345 243 14 14 chr6 73600604 73600675 -75916362 + B3A SINE B2 110 180 -18 1 1146 254 297 178 24 chr6 73600888 73601057 -75915980 - MLT1D LTR MaLR -13 492 298 1 1146 252 0 0 0 chr6 73601281 73601309 -75915728 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1146 469 314 65 0 chr6 73601309 73601462 -75915575 - RSINE1 SINE B4 -2 163 1 1 1146 394 256 77 29 chr6 73601602 73601811 -75915226 - L1MCa LINE L1 -3257 3064 2846 1 1146 220 111 46 31 chr6 73601867 73601932 -75915105 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1146 1630 234 40 25 chr6 73602010 73602414 -75914623 + MTD LTR MaLR 10 419 0 1 1146 244 302 46 36 chr6 73602706 73602902 -75914135 + L1M4 LINE L1 4846 5043 -1103 1 1146 218 259 0 17 chr6 73603320 73603379 -75913658 + CT-rich Low_complexity Low_complexity 3 60 0 1 1146 233 204 194 72 chr6 73603396 73603576 -75913461 - L1MCa LINE L1 -4094 2414 2213 1 1146 3349 277 41 24 chr6 73603606 73604554 -75912483 - Lx9 LINE L1 0 7644 6675 1 1146 2007 100 24 45 chr6 73604554 73604890 -75912147 + ORR1A4 LTR MaLR 1 329 0 1 1146 3349 277 41 24 chr6 73604890 73605122 -75911915 - Lx9 LINE L1 -970 6674 6444 1 1146 550 282 108 19 chr6 73605551 73605811 -75911226 + B4A SINE B4 4 286 -6 1 1146 185 376 31 41 chr6 73605944 73606041 -75910996 + MIRc SINE MIR 62 157 -111 1 1146 196 254 66 33 chr6 73606746 73606807 -75910230 - L3 LINE CR1 -3667 822 760 1 1146 4139 122 89 18 chr6 73607323 73608009 -75909028 - RMER19A LTR ERVK 0 737 3 1 1146 318 411 66 7 chr6 73608282 73608434 -75908603 - LTR16C LTR ERVL -242 247 87 1 1146 30 45 0 0 chr6 73609620 73609664 -75907373 + AT_rich Low_complexity Low_complexity 1 44 0 1 1146 259 328 59 25 chr6 73610168 73610287 -75906750 - MTEa LTR MaLR 0 379 257 1 1146 525 273 19 68 chr6 73610492 73610653 -75906384 - MTEa LTR MaLR -226 153 1 1 1146 272 248 105 0 chr6 73610758 73610863 -75906174 + L1MA5 LINE L1 6164 6279 -21 1 1146 1634 281 92 40 chr6 73612404 73612570 -75904467 - Tigger7 DNA MER2_type -23 2468 2294 1 1146 2256 133 57 6 chr6 73612570 73612919 -75904118 + ORR1B2 LTR MaLR 1 367 0 1 1146 1634 281 92 40 chr6 73612919 73613445 -75903592 - Tigger7 DNA MER2_type -198 2293 1740 1 1146 687 184 0 0 chr6 73613445 73613581 -75903456 + CT-rich Low_complexity Low_complexity 3 138 0 1 1146 233 267 11 53 chr6 73613594 73613689 -75903348 - Tigger7 DNA MER2_type -715 1776 1686 1 1146 1412 241 127 59 chr6 73613680 73614208 -75902829 - Tigger7 DNA MER2_type -1098 1393 830 1 1146 1540 235 3 7 chr6 73614274 73614574 -75902463 - MTC LTR MaLR -55 366 68 1 1146 394 191 21 11 chr6 73614636 73614731 -75902306 - RMER1C Other Other -19 1323 1228 1 1146 1692 316 76 11 chr6 73614731 73615244 -75901793 - Tigger7 DNA MER2_type -1741 750 197 1 1146 2024 159 44 28 chr6 73615244 73615632 -75901405 + ORR1B1 LTR MaLR 1 394 0 1 1146 1692 316 76 11 chr6 73615632 73615738 -75901299 - Tigger7 DNA MER2_type -2295 196 91 1 1146 1024 70 0 0 chr6 73615765 73615894 -75901143 - B1_Mus2 SINE Alu -10 137 9 2 1146 407 302 28 0 chr6 73615895 73616001 -75901036 - Tigger7 DNA MER2_type -2374 117 9 1 1146 1126 300 52 6 chr6 73616387 73616712 -75900325 + MTEa LTR MaLR 38 377 -2 2 1146 972 189 0 8 chr6 73616971 73617233 -75899804 + CT-rich Low_complexity Low_complexity 1 259 0 2 1146 304 286 110 0 chr6 73618065 73618156 -75898881 + B4A SINE B4 128 228 -64 2 1146 679 251 21 32 chr6 73618157 73618346 -75898691 + B3A SINE B2 1 187 -11 2 1146 224 59 29 0 chr6 73618347 73618381 -75898656 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1146 414 0 0 0 chr6 73618501 73618547 -75898490 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1146 456 72 0 0 chr6 73618548 73618617 -75898420 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 2 1146 1233 257 20 14 chr6 73618648 73618940 -75898097 + MTD LTR MaLR 10 303 -116 2 1146 223 333 22 11 chr6 73619375 73619466 -75897571 + MIRc SINE MIR 25 116 -152 2 1146 460 351 148 28 chr6 73619466 73619756 -75897281 + LTR16A LTR ERVL 1 325 -126 2 1146 349 307 79 13 chr6 73620144 73620296 -75896741 + LTR53 LTR ERVL 1 162 -357 2 1146 503 325 37 0 chr6 73620405 73620568 -75896469 + LTR53 LTR ERVL 344 512 -7 2 1146 503 278 98 34 chr6 73620839 73621103 -75895934 - Lx8 LINE L1 -2 7471 7191 2 1146 38 51 0 0 chr6 73621135 73621194 -75895843 + AT_rich Low_complexity Low_complexity 1 59 0 2 1146 253 200 130 74 chr6 73621220 73621328 -75895709 - Lx7 LINE L1 -4 7692 7579 2 1146 7827 42 1 1 chr6 73621339 73622633 -75894404 - L1Md_F2 LINE L1 -1 6581 5288 2 1146 6132 201 68 42 chr6 73622653 73624257 -75892780 - Lx7 LINE L1 -152 7544 5900 2 1146 2506 183 22 2 chr6 73624818 73625272 -75891765 + RLTR25A LTR ERVK 8 470 -633 2 1146 451 273 20 0 chr6 73625325 73625424 -75891613 - ORR1E LTR MaLR -247 112 12 2 1146 2539 60 0 3 chr6 73625446 73625766 -75891271 - L1_Mus1 LINE L1 0 6567 6249 2 1146 3752 127 15 17 chr6 73626299 73626901 -75890136 - MT2B LTR ERVL 0 601 1 2 1146 335 216 14 0 chr6 73627465 73627539 -75889498 + Lx9 LINE L1 6919 6993 -651 2 1146 3902 176 63 130 chr6 73627540 73628499 -75888538 - RMER19B LTR ERVK -8 894 1 2 1146 2160 194 43 100 chr6 73628500 73629192 -75887845 + Lx9 LINE L1 6991 7643 -1 2 1146 845 233 12 6 chr6 73629268 73629479 -75887558 - B3A SINE B2 0 216 1 2 1146 283 277 0 0 chr6 73630263 73630328 -75886709 - RMER15 LTR ERVL -108 467 403 2 1146 1604 178 39 85 chr6 73630330 73630718 -75886319 - ORR1C2 LTR MaLR -12 372 3 2 1146 282 320 0 0 chr6 73630812 73630887 -75886150 + RSINE1 SINE B4 67 141 -24 2 1146 451 355 54 11 chr6 73632229 73632414 -75884623 + B3A SINE B2 1 193 -5 2 1146 371 321 108 27 chr6 73632657 73632916 -75884121 + B4A SINE B4 2 281 -11 2 1146 1494 29 0 0 chr6 73633113 73633320 -75883717 + (TCC)n Simple_repeat Simple_repeat 1 207 0 2 1146 720 0 0 0 chr6 73633320 73633400 -75883637 + (TTC)n Simple_repeat Simple_repeat 1 80 0 2 1146 27297 92 71 3 chr6 73633412 73639438 -75877599 - L1_Mus1 LINE L1 0 6567 99 2 1146 6905 177 46 49 chr6 73639461 73641225 -75875812 - RMER3D-int LTR ERVK -69 2773 492 2 1146 420 172 0 65 chr6 73641297 73641390 -75875647 - RMER3D-int LTR ERVK -1731 1111 1025 2 1146 533 178 34 0 chr6 73641427 73641545 -75875492 - RMER3D-int LTR ERVK -2232 610 489 2 1146 435 175 99 49 chr6 73641634 73641796 -75875241 - RMER3D-int LTR ERVK -1993 849 680 2 1146 654 268 33 0 chr6 73641806 73641959 -75875078 - RLTR26 LTR ERVK -482 160 3 2 1146 1097 232 82 32 chr6 73641972 73642315 -75874722 - RMER3D-int LTR ERVK -2482 360 1 2 1146 2437 177 47 30 chr6 73642315 73642854 -75874183 - RLTR31_Mur LTR ERVK 0 553 51 2 1146 505 338 65 20 chr6 73643045 73643290 -75873747 - MER77 LTR ERVL -50 557 302 2 1146 421 299 94 8 chr6 73643315 73643443 -75873594 - MER77 LTR ERVL -359 248 110 2 1146 859 278 88 50 chr6 73643524 73644030 -75873007 - MLT1E2 LTR MaLR -60 567 1 2 1146 22 0 0 0 chr6 73644626 73644648 -75872389 + AT_rich Low_complexity Low_complexity 1 22 0 2 1146 405 0 0 0 chr6 73645351 73645396 -75871641 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1146 577 345 6 8 chr6 73645421 73645684 -75871353 - L1_Mur3 LINE L1 -553 5327 5065 2 1146 4844 49 0 7 chr6 73645684 73646283 -75870754 - L1Md_F2 LINE L1 0 6582 5988 2 1146 577 345 6 8 chr6 73646283 73646376 -75870661 - L1_Mur3 LINE L1 -816 5064 4972 2 1146 385 276 158 18 chr6 73646380 73646495 -75870542 + Lx8 LINE L1 7215 7355 -118 2 1146 396 0 0 0 chr6 73646495 73646539 -75870498 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1146 385 276 158 18 chr6 73646539 73646644 -75870393 + Lx8 LINE L1 7356 7465 -8 2 1146 834 353 47 47 chr6 73646686 73646996 -75870041 - Tigger7 DNA MER2_type -2097 394 81 2 1146 318 253 40 0 chr6 73646996 73647071 -75869966 - ID4_ SINE ID -2 81 4 2 1146 834 353 47 47 chr6 73647071 73647146 -75869891 - Tigger7 DNA MER2_type -2411 80 9 2 1146 419 321 46 4 chr6 73647567 73647842 -75869195 - Lx8 LINE L1 -364 5936 5667 2 1146 457 206 146 115 chr6 73647869 73647930 -75869107 - B3A SINE B2 0 198 154 2 1146 405 0 0 0 chr6 73647930 73647975 -75869062 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1146 457 206 146 115 chr6 73647975 73648105 -75868932 - B3A SINE B2 -45 153 1 2 1146 248 214 73 160 chr6 73648124 73648274 -75868763 - L1M4 LINE L1 -525 5649 5513 2 1146 322 276 206 55 chr6 73648372 73648625 -75868412 - B4 SINE B4 0 292 2 2 1146 507 271 26 8 chr6 73648625 73648859 -75868178 - Lx8 LINE L1 -807 5493 5256 2 1146 1500 293 80 45 chr6 73648867 73649517 -75867520 + Lx8 LINE L1 6640 7312 -161 2 1146 212 0 0 35 chr6 73649730 73649759 -75867278 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 2 1146 333 0 0 0 chr6 73649766 73649803 -75867234 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1146 396 40 0 0 chr6 73649803 73649852 -75867185 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1146 1649 237 45 24 chr6 73649852 73650228 -75866809 + MTD LTR MaLR 22 405 -14 2 1146 244 242 115 48 chr6 73651571 73651675 -75865362 + Charlie12 DNA MER1_type 765 875 -1998 2 1146 36907 6 0 0 chr6 73652141 73657707 -75859330 + L1Md_A LINE L1 20 5586 -297 2 1146 9093 1 0 0 chr6 73657707 73658703 -75858334 + L1Md_A LINE L1 5587 6582 0 2 1146 429 291 67 49 chr6 73659175 73659205 -75857832 - L1MDa LINE L1 -2986 3551 3521 2 1146 696 64 0 0 chr6 73659205 73659299 -75857738 + (TC)n Simple_repeat Simple_repeat 1 94 0 2 1146 775 169 0 35 chr6 73659301 73659442 -75857595 - B1_Mur4 SINE Alu -14 136 1 2 1146 429 291 67 49 chr6 73659442 73659675 -75857362 - L1MDa LINE L1 -3017 3520 3280 2 1146 306 219 110 0 chr6 73659678 73659751 -75857286 - MTD LTR MaLR -69 350 270 2 1146 417 66 0 0 chr6 73660006 73660067 -75856970 + (T)n Simple_repeat Simple_repeat 1 61 0 2 1146 501 317 57 41 chr6 73660067 73660261 -75856776 - MTD LTR MaLR -218 201 5 2 1146 486 0 0 0 chr6 73660463 73660517 -75856520 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1146 3676 75 0 0 chr6 73660676 73661172 -75855865 - L1_Mus2 LINE L1 -188 6378 5883 2 1146 1254 59 24 0 chr6 73661172 73661342 -75855695 + L1_Mus2 LINE L1 6393 6566 0 2 1146 343 298 61 61 chr6 73661620 73661826 -75855211 - L1MDa LINE L1 -4553 2080 1875 2 1146 281 26 26 0 chr6 73661826 73661864 -75855173 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1146 343 298 61 61 chr6 73661864 73661886 -75855151 - L1MDa LINE L1 -4759 1874 1853 2 1146 242 48 0 0 chr6 73661924 73661966 -75855071 - L1_Mus2 LINE L1 0 6566 6525 2 1146 422 101 56 11 chr6 73662015 73662105 -75854932 + CT-rich Low_complexity Low_complexity 3 96 0 2 1146 302 250 23 45 chr6 73662108 73662196 -75854841 - ID_B1 SINE B4 -21 203 118 2 1146 225 204 0 0 chr6 73662185 73662234 -75854803 - PB1D10 SINE Alu -4 113 65 2 143 402 376 92 44 chr6 73662325 73662942 -75854095 - L1MDa LINE L1 -5314 1319 673 2 1147 195 69 0 0 chr6 73662968 73662997 -75854040 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2 1147 204 40 0 0 chr6 73664094 73664119 -75852918 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1147 277 293 27 20 chr6 73664479 73664629 -75852408 + (TCTA)n Simple_repeat Simple_repeat 2 152 0 2 1147 183 330 82 10 chr6 73666106 73666204 -75850833 + L2a LINE L2 3272 3376 -50 2 1147 607 257 14 28 chr6 73667239 73667383 -75849654 - B1F2 SINE Alu -6 143 2 2 1147 2669 84 24 5 chr6 73667846 73668227 -75848810 + MTA_Mm LTR MaLR 1 388 -8 2 1147 3937 71 5 0 chr6 73668606 73669166 -75847871 - L1Md_F2 LINE L1 -1231 4652 4090 2 1147 6756 75 3 0 chr6 73669149 73670091 -75846946 + L1Md_F2 LINE L1 4641 5585 -298 2 1147 7511 69 5 11 chr6 73670092 73671084 -75845953 + L1Md_F2 LINE L1 5587 6572 -10 2 1147 225 415 0 0 chr6 73672284 73672378 -75844659 - Tigger5 DNA MER2_type -2169 237 144 2 1147 1466 204 27 7 chr6 73672428 73672772 -75844265 + ORR1D1 LTR MaLR 1 363 -11 2 1147 656 292 77 57 chr6 73672951 73673405 -75843632 + L1MB8 LINE L1 5622 6084 -94 2 1147 453 264 65 23 chr6 73673528 73673736 -75843301 + Lx7 LINE L1 5712 5943 -354 2 1147 2116 136 57 8 chr6 73673908 73674309 -75842728 + L1VL4 LINE L1 466 886 -5416 2 1147 5524 131 39 53 chr6 73674309 73675310 -75841727 + Lx2B LINE L1 6005 6991 -9 2 1147 583 283 91 36 chr6 73675473 73675748 -75841289 - B4A SINE B4 0 292 3 2 1147 30 59 0 0 chr6 73676455 73676506 -75840531 + AT_rich Low_complexity Low_complexity 1 51 0 2 1147 214 255 10 20 chr6 73677307 73677407 -75839630 + (TATG)n Simple_repeat Simple_repeat 4 102 0 2 1147 735 270 9 91 chr6 73677418 73677650 -75839387 - B4A SINE B4 0 292 80 2 1147 1225 125 59 23 chr6 73679415 73679636 -75837401 - L1_Mur2 LINE L1 -603 5274 5046 2 1147 5798 96 53 51 chr6 73679637 73680693 -75836344 + L1_Mur2 LINE L1 2516 3573 -2304 2 1147 472 308 0 53 chr6 73684485 73684694 -75832343 - B3A SINE B2 0 198 1 2 1147 1069 145 44 4 chr6 73684723 73684811 -75832226 + Lx9 LINE L1 7406 7497 -147 2 1147 336 48 0 0 chr6 73684811 73684853 -75832184 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1147 1069 145 44 4 chr6 73684853 73684993 -75832044 + Lx9 LINE L1 7498 7642 -2 2 1147 301 197 0 50 chr6 73685186 73685266 -75831771 + RMER19C LTR ERVK 126 201 -410 2 1147 643 327 57 20 chr6 73685416 73685956 -75831081 + L1MB7 LINE L1 4024 4583 -1563 2 1147 432 0 0 0 chr6 73686199 73686247 -75830790 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1147 487 258 106 56 chr6 73686374 73686694 -75830343 + L1MB7 LINE L1 4622 4957 -1189 2 1147 246 242 99 20 chr6 73686744 73686896 -75830141 + L1MB7 LINE L1 5180 5343 -803 2 1147 829 267 19 14 chr6 73686924 73687133 -75829904 + ID_B1 SINE B4 11 220 -4 2 1147 4411 14 0 0 chr6 73687231 73687724 -75829313 - MT2_Mm LTR ERVL 0 493 1 2 1147 302 0 0 0 chr6 73687724 73687762 -75829275 - MERVL-int LTR ERVL 0 5485 5448 2 1147 352 125 26 53 chr6 73687762 73687838 -75829199 - ORR1A3-int LTR MaLR -1323 640 567 2 1147 45667 17 1 0 chr6 73687838 73693204 -75823833 - MERVL-int LTR ERVL -114 5371 1 2 1147 4411 14 0 0 chr6 73693204 73693697 -75823340 - MT2_Mm LTR ERVL 0 493 1 2 1147 214 359 10 42 chr6 73693745 73693841 -75823196 - B1F2 SINE Alu -47 102 10 2 1147 872 271 76 32 chr6 73694004 73694334 -75822703 + MTD LTR MaLR 1 369 -52 2 1147 180 0 0 0 chr6 73694334 73694354 -75822683 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1147 495 328 45 60 chr6 73694354 73695015 -75822022 + L1MB7 LINE L1 5505 6164 -10 2 1147 594 60 0 0 chr6 73695015 73695098 -75821939 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 1147 401 312 83 48 chr6 73695140 73695308 -75821729 - B4A SINE B4 -16 276 103 3 1147 424 312 79 66 chr6 73695613 73696083 -75820954 + L1MDa LINE L1 1281 1756 -4877 3 1147 243 0 0 0 chr6 73696090 73696117 -75820920 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1147 372 234 51 51 chr6 73696157 73696333 -75820704 + L1MDa LINE L1 1841 2016 -4617 3 1147 255 296 43 0 chr6 73696704 73696819 -75820218 + L1MDa LINE L1 4094 4213 -2324 3 1147 615 300 24 26 chr6 73697305 73697531 -75819506 - B3A SINE B2 0 216 1 3 1147 405 0 0 0 chr6 73698260 73698305 -75818732 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1147 1261 31 0 30 chr6 73698306 73698474 -75818563 - L1Md_F3 LINE L1 -18 6566 6404 3 1147 1016 239 116 17 chr6 73698878 73699180 -75817857 - MLT1B LTR MaLR -8 382 51 3 1147 1183 55 0 7 chr6 73699783 73699931 -75817106 - B1_Mus2 SINE Alu 0 147 1 3 1147 8779 172 64 38 chr6 73701228 73703221 -75813816 + RLTR19-int LTR ERVK 2325 4370 -1767 3 1147 252 0 0 0 chr6 73703389 73703417 -75813620 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 1147 430 298 31 57 chr6 73703681 73703873 -75813164 + RLTR23 LTR ERV1 244 430 0 3 1147 22 0 0 0 chr6 73704205 73704227 -75812810 + AT_rich Low_complexity Low_complexity 1 22 0 3 1147 267 31 0 0 chr6 73704358 73704390 -75812647 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1147 338 42 0 20 chr6 73704394 73704443 -75812594 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 3 1147 347 301 93 27 chr6 73706037 73706187 -75810850 + RSINE1 SINE B4 1 160 -5 3 1147 183 238 24 0 chr6 73706215 73706257 -75810780 + L2c LINE L2 3343 3385 -2 3 1147 342 67 0 0 chr6 73707229 73707274 -75809763 + (TATG)n Simple_repeat Simple_repeat 2 46 0 3 1147 381 312 21 74 chr6 73707274 73707464 -75809573 - B3A SINE B2 -16 182 3 3 1147 2126 320 35 46 chr6 73707512 73707729 -75809308 + Lx9 LINE L1 6341 6563 -1081 3 1147 2023 179 0 24 chr6 73707729 73708101 -75808936 + Lx LINE L1 6292 6654 0 3 1147 2126 320 35 46 chr6 73708101 73708901 -75808136 + Lx9 LINE L1 6564 7347 -297 3 1147 396 0 0 0 chr6 73708905 73708949 -75808088 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1147 21 0 0 0 chr6 73708952 73708973 -75808064 + AT_rich Low_complexity Low_complexity 1 21 0 3 1147 505 226 0 19 chr6 73709251 73709359 -75807678 - RMER20B LTR ERVK 0 627 522 3 1147 2062 128 52 60 chr6 73709364 73709747 -75807290 - RMER20B LTR ERVK -247 380 1 3 1147 188 77 18 55 chr6 73709889 73709944 -75807093 + (TTTTTG)n Simple_repeat Simple_repeat 1 53 0 3 1147 317 255 53 11 chr6 73709946 73710041 -75806996 - PB1D10 SINE Alu 0 117 19 3 1147 1498 244 89 12 chr6 73710140 73710473 -75806564 + Lx6 LINE L1 6974 7321 -139 3 1147 204 67 0 0 chr6 73710473 73710503 -75806534 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 3 1147 1498 244 89 12 chr6 73710503 73710597 -75806440 + Lx6 LINE L1 7322 7434 -26 3 1147 225 299 9 18 chr6 73710690 73710799 -75806238 + L1M4 LINE L1 5171 5278 -868 3 1147 609 299 48 36 chr6 73711259 73711509 -75805528 + ORR1D2 LTR MaLR 118 370 0 3 1147 747 293 106 48 chr6 73711830 73712160 -75804877 - ORR1E LTR MaLR -7 352 4 3 1147 2798 161 75 20 chr6 73712769 73713314 -75803723 - RMER15 LTR ERVL 0 575 1 3 1147 299 313 79 79 chr6 73713365 73713618 -75803419 + RMER12 LTR ERVK 736 988 -334 3 1147 270 309 0 18 chr6 73714262 73714374 -75802663 + (TATATG)n Simple_repeat Simple_repeat 2 111 0 3 1147 447 323 0 41 chr6 73715216 73715387 -75801650 - RSINE1 SINE B4 0 165 2 3 1147 23 33 0 0 chr6 73715598 73715628 -75801409 + AT_rich Low_complexity Low_complexity 1 30 0 3 1147 346 84 77 0 chr6 73716382 73716447 -75800590 + L1_Mur2 LINE L1 3824 3896 -1951 3 1147 814 231 96 4 chr6 73716431 73716670 -75800367 + Lx2B LINE L1 6733 6993 -7 3 1147 22 56 0 0 chr6 73716979 73717015 -75800022 + AT_rich Low_complexity Low_complexity 1 36 0 3 1147 207 206 53 21 chr6 73717167 73717261 -75799776 + (TA)n Simple_repeat Simple_repeat 1 97 0 3 1147 460 254 92 8 chr6 73717267 73717398 -75799639 - B1F SINE Alu 0 149 8 3 1147 334 269 140 20 chr6 73717499 73717749 -75799288 - L1MA5A LINE L1 -188 6109 5830 3 1147 350 262 67 114 chr6 73718058 73718373 -75798664 - L1MA5A LINE L1 -646 5645 5346 3 1147 1310 213 81 10 chr6 73718386 73718771 -75798266 - Lx9 LINE L1 0 7644 7233 3 1147 1487 245 29 16 chr6 73718766 73719148 -75797889 + Lx9 LINE L1 6580 6966 -678 3 1147 394 244 55 0 chr6 73719148 73719275 -75797762 - L1MA5A LINE L1 -1377 4763 4630 3 1147 453 36 0 0 chr6 73719301 73719356 -75797681 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1147 280 304 138 6 chr6 73719367 73719526 -75797511 + L1M2 LINE L1 4817 4996 -1147 3 1147 273 338 13 0 chr6 73719629 73719721 -75797316 - ID4 SINE ID -58 94 2 3 1147 228 242 30 0 chr6 73719743 73719809 -75797228 - L1MA5A LINE L1 -2303 3840 3773 3 1147 242 263 70 0 chr6 73720028 73720142 -75796895 - L1MA5A LINE L1 -2403 3740 3619 3 1147 281 222 56 0 chr6 73720164 73720272 -75796765 - L1_Mur3 LINE L1 -532 5348 5235 3 1147 562 225 23 8 chr6 73720373 73720503 -75796534 - Lx8 LINE L1 -142 7331 7200 3 1147 354 292 62 29 chr6 73720657 73720897 -75796140 - L1MA5A LINE L1 -2646 3497 3250 3 1147 264 122 0 0 chr6 73722789 73722830 -75794207 + (TGG)n Simple_repeat Simple_repeat 1 41 0 3 1147 341 226 0 73 chr6 73722931 73723055 -75793982 - Lx8 LINE L1 0 7473 7359 3 1147 814 306 121 18 chr6 73723089 73723419 -75793618 - MLT2D LTR ERVL -50 364 1 3 1147 448 297 54 78 chr6 73723447 73723743 -75793294 + B4A SINE B4 3 291 -1 3 1147 435 125 0 0 chr6 73723764 73723836 -75793201 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1147 7227 145 2 19 chr6 73724076 73725295 -75791742 - Lx LINE L1 -117 5766 4568 3 1147 5489 105 45 4 chr6 73725296 73726126 -75790911 + Lx LINE L1 5790 6653 -1 3 1147 1622 200 83 61 chr6 73726950 73727393 -75789644 - RMER5 LTR ERV1 -25 509 57 3 1147 259 254 0 16 chr6 73727442 73727506 -75789531 - Lx7 LINE L1 -425 7271 7209 3 1147 715 231 108 13 chr6 73727543 73727775 -75789262 - RMER5 LTR ERV1 -280 254 1 3 1147 189 352 33 22 chr6 73727781 73727871 -75789166 + MIRb SINE MIR 175 265 -3 3 1147 363 280 23 23 chr6 73728719 73728891 -75788146 + GA-rich Low_complexity Low_complexity 4 175 0 3 1147 307 177 0 20 chr6 73728900 73728998 -75788039 + CT-rich Low_complexity Low_complexity 1 96 0 3 1147 269 210 19 29 chr6 73729042 73729145 -75787892 + GA-rich Low_complexity Low_complexity 1 102 0 3 1147 288 0 0 0 chr6 73729354 73729386 -75787651 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1147 414 0 0 0 chr6 73729479 73729525 -75787512 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1147 10168 81 8 20 chr6 73730508 73731933 -75785104 - Lx3_Mus LINE L1 -11 6998 5590 3 1147 727 306 15 5 chr6 73731933 73732130 -75784907 + B3 SINE B2 18 216 0 3 1147 719 260 16 73 chr6 73732237 73732428 -75784609 - B3A SINE B2 0 198 19 3 1147 619 46 23 0 chr6 73732441 73732528 -75784509 + (TCTA)n Simple_repeat Simple_repeat 1 89 0 3 1147 269 186 0 14 chr6 73733492 73733563 -75783474 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1147 21 0 0 0 chr6 73733563 73733584 -75783453 + AT_rich Low_complexity Low_complexity 1 21 0 3 1147 744 275 31 0 chr6 73734011 73734204 -75782833 - B3 SINE B2 -17 199 1 3 1147 1111 70 0 7 chr6 73734711 73734855 -75782182 + B1_Mm SINE Alu 2 144 -3 3 1147 254 29 0 28 chr6 73734855 73734891 -75782146 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 1147 27522 63 7 2 chr6 73734979 73739349 -75777688 - L1Md_F2 LINE L1 -15 6567 2175 3 1147 660 281 35 30 chr6 73739364 73739533 -75777504 - B3 SINE B2 -46 170 1 3 1147 353 337 99 45 chr6 73739688 73739890 -75777147 + MER20 DNA MER1_type 2 214 -5 3 1147 886 300 47 25 chr6 73739989 73740263 -75776774 + MTE2a LTR MaLR 48 327 -52 3 1147 29 60 0 0 chr6 73740367 73740417 -75776620 + AT_rich Low_complexity Low_complexity 1 50 0 3 1147 512 320 79 60 chr6 73740705 73740971 -75776066 - B4A SINE B4 -16 276 6 3 1147 325 234 21 11 chr6 73740996 73741091 -75775946 - L1MA6 LINE L1 -99 6201 6106 3 1147 2844 186 61 2 chr6 73741284 73741827 -75775210 - RMER15 LTR ERVL 0 575 1 3 1147 283 226 83 0 chr6 73742637 73742721 -75774316 - Lx9 LINE L1 -11 7633 7543 3 1147 420 296 80 15 chr6 73742739 73742876 -75774161 - B3A SINE B2 -3 195 50 3 1147 2483 166 89 0 chr6 73742900 73743384 -75773653 - Lx4A LINE L1 0 7058 6532 3 1147 485 280 274 10 chr6 73743475 73743668 -75773369 + ORR1E LTR MaLR 8 251 -108 3 1147 247 262 58 11 chr6 73743831 73743928 -75773109 + ORR1E LTR MaLR 261 370 0 3 1147 902 279 12 12 chr6 73744035 73744282 -75772755 + ORR1D2 LTR MaLR 1 247 -123 3 1147 324 154 0 0 chr6 73744282 73744334 -75772703 - Lx4B LINE L1 -175 6883 6832 3 1147 250 343 14 0 chr6 73744744 73744814 -75772223 + ID4 SINE ID 2 72 -11 3 1147 283 328 89 30 chr6 73745921 73746157 -75770880 + MIRb SINE MIR 19 268 0 3 1147 721 249 114 0 chr6 73747131 73747324 -75769713 + B3 SINE B2 1 215 -1 3 1147 620 255 19 90 chr6 73747328 73747539 -75769498 - B3A SINE B2 0 198 3 3 1147 504 158 0 0 chr6 73747803 73747898 -75769139 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 1147 806 339 47 7 chr6 73747902 73748178 -75768859 - B4A SINE B4 0 292 6 3 1147 204 143 0 0 chr6 73748279 73748321 -75768716 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1147 1941 232 41 11 chr6 73749001 73749524 -75767513 + RLTR12B LTR ERVK 1 560 -8 3 1147 471 311 42 58 chr6 73749752 73749943 -75767094 - B4 SINE B4 -104 188 1 3 1147 223 311 33 11 chr6 73750345 73750436 -75766601 + PB1D10 SINE Alu 19 111 -6 3 1147 523 363 52 12 chr6 73750728 73750979 -75766058 - MIR SINE MIR 0 262 2 3 1147 429 20 0 0 chr6 73751391 73751441 -75765596 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1147 1338 83 0 68 chr6 73751540 73751759 -75765278 - L1Md_F2 LINE L1 -12 6570 6367 3 1147 1763 203 74 18 chr6 73751778 73752077 -75764960 - Lx9 LINE L1 -8 7636 7311 4 1147 383 0 21 0 chr6 73752077 73752124 -75764913 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1147 1763 203 74 18 chr6 73752124 73752271 -75764766 - Lx9 LINE L1 -334 7310 7165 4 1147 441 0 0 0 chr6 73752431 73752480 -75764557 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1147 762 293 74 44 chr6 73753129 73753493 -75763544 - MTEa LTR MaLR -4 375 1 4 1147 262 239 189 107 chr6 73754523 73754645 -75762392 - RMER5 LTR ERV1 -34 500 369 4 1147 588 81 0 0 chr6 73754981 73755068 -75761969 + (TC)n Simple_repeat Simple_repeat 1 87 0 4 1147 411 21 0 0 chr6 73755068 73755116 -75761921 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1147 2767 221 14 96 chr6 73755125 73755896 -75761141 - Lx7 LINE L1 -28 7668 6961 4 1147 5658 214 103 58 chr6 73755881 73756791 -75760246 - Lx7 LINE L1 -902 6794 5785 4 1147 212 0 36 0 chr6 73756791 73756819 -75760218 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 4 1147 5658 165 43 115 chr6 73756819 73757819 -75759218 - Lx7 LINE L1 -96 5784 4867 4 1147 753 33 0 0 chr6 73757819 73757911 -75759126 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 4 1147 5658 165 43 115 chr6 73757911 73758132 -75758905 - Lx7 LINE L1 -1014 4866 4634 4 1147 207 0 0 0 chr6 73758132 73758155 -75758882 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1147 5658 165 43 115 chr6 73758155 73758341 -75758696 - Lx7 LINE L1 -1247 4633 4472 4 1147 181 200 29 0 chr6 73759645 73759680 -75757357 + L2b LINE L2 3322 3357 -18 4 1147 424 287 29 22 chr6 73761069 73761208 -75755829 - RMER15 LTR ERVL -2 573 434 4 1147 961 287 32 98 chr6 73761661 73762039 -75754998 - ORR1E LTR MaLR -6 353 1 4 1147 774 276 144 13 chr6 73762957 73763291 -75753746 - MTEa LTR MaLR 0 379 3 4 1147 1279 259 18 76 chr6 73763622 73764002 -75753035 - ORR1D1 LTR MaLR -11 363 6 4 1147 342 366 55 40 chr6 73764318 73764591 -75752446 + B4A SINE B4 2 278 -14 4 1147 492 200 0 0 chr6 73765091 73765201 -75751836 + (TA)n Simple_repeat Simple_repeat 1 110 0 4 1147 219 69 0 0 chr6 73765941 73765970 -75751067 + (GAA)n Simple_repeat Simple_repeat 2 30 0 4 1147 667 308 99 42 chr6 73766401 73766944 -75750093 - L1MC4 LINE L1 -203 7839 7266 4 1147 699 267 17 6 chr6 73766983 73767160 -75749877 - B3A SINE B2 -18 180 2 4 1147 1068 188 9 19 chr6 73767209 73767420 -75749617 - B3 SINE B2 -6 210 2 4 1147 304 316 73 24 chr6 73767448 73767820 -75749217 + L1MA5A LINE L1 5648 6031 -269 4 1147 543 282 12 35 chr6 73768084 73768253 -75748784 - L1MC4 LINE L1 -1135 6907 6743 4 1147 38 81 0 0 chr6 73768928 73769015 -75748022 + AT_rich Low_complexity Low_complexity 1 87 0 4 1147 221 226 18 36 chr6 73769059 73769114 -75747923 + B4 SINE B4 24 77 -215 4 1147 569 96 11 0 chr6 73769185 73769279 -75747758 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 1147 28 0 0 0 chr6 73769540 73769568 -75747469 + AT_rich Low_complexity Low_complexity 1 28 0 4 1147 204 97 0 0 chr6 73769671 73769702 -75747335 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 4 1147 28 0 0 0 chr6 73769777 73769805 -75747232 + AT_rich Low_complexity Low_complexity 1 28 0 4 1147 215 381 0 12 chr6 73770125 73770210 -75746827 - MIRm SINE MIR 0 276 193 4 1147 542 216 10 0 chr6 73771043 73771140 -75745897 + B1_Mur3 SINE Alu 2 99 -50 4 1147 364 287 137 17 chr6 73771140 73771160 -75745877 + B4 SINE B4 87 217 -75 4 1147 636 48 0 0 chr6 73771161 73771245 -75745792 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1147 302 352 39 35 chr6 73771305 73771508 -75745529 + B3 SINE B2 1 204 -12 4 1147 1486 0 0 11 chr6 73773388 73773564 -75743473 + (GAA)n Simple_repeat Simple_repeat 2 175 0 4 1147 607 303 103 119 chr6 73773742 73774066 -75742971 - Lx8 LINE L1 -3 7470 7153 4 1147 1157 285 19 8 chr6 73774066 73774427 -75742610 + ORR1D2 LTR MaLR 5 369 -1 4 1147 607 303 103 119 chr6 73774427 73774589 -75742448 - Lx8 LINE L1 -321 7152 6992 4 1147 349 258 37 62 chr6 73775184 73775345 -75741692 + (CATG)n Simple_repeat Simple_repeat 2 158 0 4 1147 531 250 0 0 chr6 73775346 73775526 -75741511 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1147 385 227 29 57 chr6 73775526 73775666 -75741371 + (CATG)n Simple_repeat Simple_repeat 1 136 0 4 1147 579 231 0 0 chr6 73775668 73775828 -75741209 + (TG)n Simple_repeat Simple_repeat 1 160 0 4 1147 292 267 0 0 chr6 73776667 73776727 -75740310 - B3A SINE B2 -125 73 14 4 1147 2005 173 49 18 chr6 73776753 73777142 -75739895 - Lx2A1 LINE L1 0 7008 6608 4 1147 285 51 0 0 chr6 73777176 73777215 -75739822 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1147 1050 74 7 0 chr6 73777216 73777351 -75739686 - B1_Mus1 SINE Alu -12 136 1 4 1147 6388 130 21 9 chr6 73777359 73778369 -75738668 + Lx2A LINE L1 5982 7003 -5 4 1147 999 73 0 0 chr6 73778400 73778550 -75738487 + (TCTA)n Simple_repeat Simple_repeat 1 150 0 4 1147 411 237 48 9 chr6 73779157 73779278 -75737759 - MLT1A LTR MaLR 0 408 263 4 1147 1029 74 7 0 chr6 73779307 73779442 -75737595 - B1_Mus2 SINE Alu 0 147 12 4 1147 589 335 60 17 chr6 73779458 73779692 -75737345 - MLT1A LTR MaLR -130 244 1 4 1147 1477 50 22 0 chr6 73779979 73780161 -75736876 - B2_Mm1t SINE B2 -6 187 2 4 1147 291 314 47 9 chr6 73780523 73780629 -75736408 - B4A SINE B4 -179 113 4 4 1147 454 318 68 34 chr6 73780723 73781013 -75736024 - MLT1D LTR MaLR -131 549 324 4 1147 276 271 26 46 chr6 73781132 73781283 -75735754 + CT-rich Low_complexity Low_complexity 5 152 0 4 1147 489 47 0 0 chr6 73781321 73781385 -75735652 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 4 1147 258 229 12 20 chr6 73781932 73782006 -75735031 + ID4_ SINE ID 7 82 -70 4 1147 249 33 0 0 chr6 73782721 73782751 -75734286 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1147 438 271 27 131 chr6 73783231 73783270 -75733767 + B3A SINE B2 1 40 -158 4 1147 989 74 0 29 chr6 73783270 73783409 -75733628 + B1_Mus1 SINE Alu 2 136 -12 4 1147 363 44 0 0 chr6 73783409 73783454 -75733583 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 4 1147 438 271 27 131 chr6 73783454 73783634 -75733403 + B3A SINE B2 41 197 -1 4 1147 433 315 31 105 chr6 73784397 73784844 -75732193 - RLTR11B LTR ERVK -9 519 100 4 1147 3512 140 38 17 chr6 73784868 73785659 -75731378 + RLTR13D2 LTR ERVK 1 1023 0 4 1147 232 298 35 35 chr6 73785661 73785748 -75731289 - RLTR11A2 LTR ERVK -440 87 1 4 1147 367 333 9 9 chr6 73785903 73786009 -75731028 - RSINE1 SINE B4 -18 147 42 4 1147 2312 82 123 50 chr6 73786009 73786392 -75730645 + L1_Mus4 LINE L1 6219 6629 -7 4 1147 27 49 0 0 chr6 73787214 73787255 -75729782 + AT_rich Low_complexity Low_complexity 1 41 0 4 1147 1106 68 0 33 chr6 73787282 73787434 -75729603 - B1_Mus1 SINE Alu 0 148 2 4 1147 817 260 34 5 chr6 73787564 73787769 -75729268 + B3 SINE B2 1 211 -5 4 1147 1031 105 0 0 chr6 73788490 73788633 -75728404 + B1_Mus1 SINE Alu 6 148 0 4 1147 270 95 0 0 chr6 73788633 73788675 -75728362 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 4 1147 253 319 27 94 chr6 73788714 73788863 -75728174 + MLT1F1 LTR MaLR 1 139 -488 4 1147 232 300 16 16 chr6 73789762 73789823 -75727214 + B4 SINE B4 228 288 -4 4 1147 319 325 88 0 chr6 73790002 73790162 -75726875 + MLT1F1 LTR MaLR 396 569 0 4 1147 417 272 165 71 chr6 73790524 73790706 -75726331 + B4 SINE B4 3 201 -91 4 1147 309 51 0 0 chr6 73790768 73790807 -75726230 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1147 26 0 0 0 chr6 73792734 73792760 -75724277 + AT_rich Low_complexity Low_complexity 1 26 0 4 1147 819 105 0 0 chr6 73792855 73792979 -75724058 + (TTTCC)n Simple_repeat Simple_repeat 5 128 0 4 143 726 325 81 47 chr6 73793344 73793876 -75723161 + MLT2B3 LTR ERVL 5 554 0 4 1148 8767 174 37 29 chr6 73795567 73797398 -75719639 + L1_Mur2 LINE L1 2890 4734 -1143 4 1148 3856 147 21 0 chr6 73798418 73799030 -75718007 + Lx4A LINE L1 6422 7046 -12 4 1148 594 41 0 0 chr6 73799036 73799109 -75717928 + (TAAA)n Simple_repeat Simple_repeat 3 75 0 4 1148 871 344 103 30 chr6 73800335 73800842 -75716195 - MER76 LTR ERVL -126 565 22 4 1148 627 81 0 0 chr6 73802521 73802607 -75714430 + (TTTA)n Simple_repeat Simple_repeat 2 87 0 4 1148 642 233 95 42 chr6 73802608 73802902 -75714135 - Lx2B LINE L1 -25 7033 6620 4 1148 298 37 0 0 chr6 73803420 73803462 -75713575 + L1_Mus4 LINE L1 6177 6218 -420 4 1148 418 325 53 34 chr6 73803466 73803673 -75713364 + MLT1H-int LTR MaLR 1027 1237 -172 4 1148 194 311 61 78 chr6 73804838 73804953 -75712084 - L3b LINE CR1 -243 239 127 4 1148 471 87 0 0 chr6 73805101 73805170 -75711867 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1148 300 283 0 11 chr6 73805185 73805278 -75711759 - L1MA4A LINE L1 -384 5919 5828 4 1148 544 302 74 31 chr6 73805286 73805635 -75711402 + L1_Mur3 LINE L1 5092 5436 -444 4 1148 862 274 41 26 chr6 73805639 73805832 -75711205 - Lx6 LINE L1 -5 7455 7258 4 1148 240 35 0 0 chr6 73805832 73805861 -75711176 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1148 862 274 41 26 chr6 73805861 73805937 -75711100 - Lx6 LINE L1 -203 7257 7183 4 1148 216 0 0 0 chr6 73805952 73805976 -75711061 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1148 248 225 25 12 chr6 73805977 73806058 -75710979 + Lx6 LINE L1 6719 6800 -660 4 1148 3641 190 20 11 chr6 73806080 73806816 -75710221 - Lx2B LINE L1 -480 6520 5778 4 1148 29044 108 17 10 chr6 73806805 73812229 -75704808 - L1_Mus1 LINE L1 0 6567 1105 4 1148 6851 68 2 15 chr6 73812225 73812380 -75704657 - L1Md_F2 LINE L1 0 6582 6437 4 1148 3425 35 0 0 chr6 73812380 73812776 -75704261 - MTA_Mm LTR MaLR 0 396 1 4 1148 9319 25 2 2 chr6 73812776 73813874 -75703163 - MTA_Mm-int LTR MaLR 0 1098 1 4 1148 3425 35 0 0 chr6 73813874 73814270 -75702767 - MTA_Mm LTR MaLR 0 396 1 4 1148 6851 68 2 15 chr6 73814270 73815029 -75702008 - L1Md_F2 LINE L1 -146 6436 5680 4 1148 3554 220 52 17 chr6 73815026 73815902 -75701135 - L1_Mus1 LINE L1 -5520 1096 190 4 1148 1296 182 4 4 chr6 73815908 73816150 -75700887 - Lx3C LINE L1 -1133 5843 5602 4 1148 636 324 127 20 chr6 73816210 73816462 -75700575 + B4A SINE B4 2 280 -12 4 1148 516 16 0 0 chr6 73816464 73816525 -75700512 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1148 328 111 32 0 chr6 73816533 73816596 -75700441 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1148 495 98 11 21 chr6 73816651 73816745 -75700292 + (GAAA)n Simple_repeat Simple_repeat 2 94 0 4 1148 210 171 0 24 chr6 73817498 73817540 -75699497 + CT-rich Low_complexity Low_complexity 1 41 0 4 1148 6538 43 2 0 chr6 73817612 73818397 -75698640 + L1_Mus1 LINE L1 5781 6567 0 5 1148 749 188 176 37 chr6 73819191 73819379 -75697658 - B3 SINE B2 -2 214 1 5 1148 919 326 131 6 chr6 73820908 73821390 -75695647 + Lx8 LINE L1 6921 7462 -11 5 1148 1604 135 9 78 chr6 73821528 73821874 -75695163 + RLTRETN_Mm LTR ERVK 1 322 0 5 1148 1040 257 196 22 chr6 73822073 73822486 -75694551 - RMER5 LTR ERV1 -10 524 40 5 1148 1957 237 29 11 chr6 73822882 73823768 -75693269 - Lx5 LINE L1 -11 7039 6080 5 1148 3659 130 21 19 chr6 73823768 73823860 -75693177 + L1_Mur2 LINE L1 4180 4273 -1604 5 1148 288 0 0 0 chr6 73823860 73823892 -75693145 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1148 3659 130 21 19 chr6 73823892 73824243 -75692794 + L1_Mur2 LINE L1 4274 4633 -1244 5 1148 948 57 0 0 chr6 73824243 73824366 -75692671 + (CCAA)n Simple_repeat Simple_repeat 2 124 0 5 1148 3659 130 21 19 chr6 73824366 73824542 -75692495 + L1_Mur2 LINE L1 4634 4799 -1078 5 1148 225 200 20 0 chr6 73826091 73826141 -75690896 - L1M4 LINE L1 -913 5233 5183 5 1148 300 262 64 51 chr6 73826327 73826484 -75690553 - L1M2 LINE L1 -1226 4917 4759 5 1148 531 223 151 32 chr6 73826895 73826977 -75690060 - RMER5 LTR ERV1 -23 511 421 5 1148 5174 55 3 0 chr6 73826977 73827630 -75689407 - L1_Mus1 LINE L1 0 6567 5913 5 1148 531 223 151 32 chr6 73827630 73827665 -75689372 - RMER5 LTR ERV1 -114 420 384 5 1148 442 75 0 59 chr6 73827665 73827750 -75689287 - L1Md_F2 LINE L1 -10 6572 6493 5 1148 531 223 151 32 chr6 73827750 73827816 -75689221 - RMER5 LTR ERV1 -151 383 308 5 1148 1356 183 83 11 chr6 73827816 73828082 -75688955 + Lx5 LINE L1 6757 7041 -9 5 1148 1493 203 71 6 chr6 73828137 73828459 -75688578 - RMER5 LTR ERV1 -191 343 1 5 1148 297 344 8 0 chr6 73828727 73828852 -75688185 + Lx9 LINE L1 7314 7439 -205 5 1148 222 37 0 0 chr6 73828892 73828919 -75688118 + (CTG)n Simple_repeat Simple_repeat 1 27 0 5 1148 251 188 56 45 chr6 73828920 73829009 -75688028 + Lx9 LINE L1 7540 7629 -15 5 1148 289 411 35 0 chr6 73829687 73829828 -75687209 + MER20 DNA MER1_type 7 152 -67 5 1148 23 0 0 0 chr6 73830669 73830692 -75686345 + AT_rich Low_complexity Low_complexity 1 23 0 5 1148 7717 227 54 12 chr6 73830693 73830917 -75686120 - Lx7 LINE L1 -2 7694 7469 5 1148 225 0 0 0 chr6 73830917 73830942 -75686095 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 1148 7717 227 54 12 chr6 73830942 73832520 -75684517 - Lx7 LINE L1 -228 7468 5816 5 1148 431 0 0 36 chr6 73832523 73832579 -75684458 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 5 1148 702 35 0 0 chr6 73832581 73832667 -75684370 - B1_Mm SINE Alu -6 141 56 5 1148 287 0 0 50 chr6 73832722 73832762 -75684275 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 5 1148 702 35 0 0 chr6 73832764 73832850 -75684187 - B1_Mm SINE Alu -6 141 56 5 1148 431 0 0 36 chr6 73832905 73832961 -75684076 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 5 1148 1081 45 0 0 chr6 73832963 73833096 -75683941 - B1_Mm SINE Alu -6 141 9 5 1148 470 191 0 134 chr6 73832992 73833119 -75683918 - MT2B LTR ERVL -337 264 155 5 1148 421 243 18 0 chr6 73833120 73833231 -75683806 - Lx7 LINE L1 -1916 5780 5668 5 1148 324 300 67 30 chr6 73834030 73834164 -75682873 + ID_B1 SINE B4 84 222 -2 5 1148 398 264 70 16 chr6 73834690 73834875 -75682162 - L1MC4 LINE L1 -694 7348 7154 5 1148 327 309 81 81 chr6 73835052 73835276 -75681761 - L1MC4 LINE L1 -915 6870 6655 5 1148 213 39 0 0 chr6 73835276 73835302 -75681735 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1148 326 325 31 31 chr6 73835302 73835320 -75681717 - L1MC4 LINE L1 -1326 6669 6652 5 1148 33 0 0 0 chr6 73835431 73835464 -75681573 + AT_rich Low_complexity Low_complexity 1 33 0 5 1148 28 48 0 0 chr6 73835962 73836004 -75681033 + AT_rich Low_complexity Low_complexity 1 42 0 5 1148 23 0 0 0 chr6 73836032 73836055 -75680982 + AT_rich Low_complexity Low_complexity 1 23 0 5 1148 2503 248 77 15 chr6 73836062 73837141 -75679896 - ORR1C2-int LTR MaLR -217 1153 6 5 1148 1117 203 225 3 chr6 73837149 73837451 -75679586 - ORR1C2 LTR MaLR -3 381 13 5 1148 1074 103 0 0 chr6 73837471 73837616 -75679421 - B1_Mus2 SINE Alu -2 145 1 5 1148 384 330 7 9 chr6 73838101 73838249 -75678788 + B3A SINE B2 14 160 -38 5 1148 1343 113 27 0 chr6 73838286 73838508 -75678529 - Lx2B LINE L1 -7 6993 6766 5 1148 3909 73 6 10 chr6 73838524 73839046 -75677991 - L1_Mus1 LINE L1 -1 6566 6047 5 1148 525 280 103 76 chr6 73839149 73839593 -75677444 + RMER20B LTR ERVK 1 462 -54 5 1148 378 206 62 0 chr6 73839727 73839824 -75677213 + MIR SINE MIR 160 262 0 5 1148 21 57 0 0 chr6 73840209 73840244 -75676793 + AT_rich Low_complexity Low_complexity 1 35 0 5 1148 22 0 0 0 chr6 73840325 73840347 -75676690 + AT_rich Low_complexity Low_complexity 1 22 0 5 1148 231 35 86 17 chr6 73840477 73840535 -75676502 + (TTG)n Simple_repeat Simple_repeat 2 63 0 5 1148 854 168 104 36 chr6 73840721 73840913 -75676124 + B3 SINE B2 5 209 -7 5 1148 292 239 32 21 chr6 73841035 73841129 -75675908 + L1MB4 LINE L1 749 843 -5764 5 1148 620 323 13 13 chr6 73841210 73841442 -75675595 - Lx8 LINE L1 -190 7283 7052 5 1148 768 91 0 0 chr6 73841503 73841613 -75675424 + (GA)n Simple_repeat Simple_repeat 2 111 0 5 1148 927 51 0 0 chr6 73842506 73842623 -75674414 + (TC)n Simple_repeat Simple_repeat 2 118 0 5 1148 257 324 26 86 chr6 73842647 73842799 -75674238 - B4A SINE B4 -147 145 3 5 1148 386 158 79 0 chr6 73843518 73843619 -75673418 + Lx9 LINE L1 7535 7643 -1 5 1148 776 34 0 0 chr6 73843800 73843917 -75673120 - MusHAL1 LINE L1 0 2712 2596 5 1148 1030 66 0 0 chr6 73843914 73844050 -75672987 - L1_Mus4 LINE L1 -416 6220 6085 5 1148 2660 97 29 0 chr6 73844050 73844431 -75672606 + L1_Mus4 LINE L1 6238 6629 -7 5 1148 1586 41 13 51 chr6 73844432 73844666 -75672371 - MusHAL1 LINE L1 -102 2610 2386 5 1148 4176 103 68 3 chr6 73844657 73845320 -75671717 - L1VL4 LINE L1 -5564 738 33 5 1148 303 263 52 40 chr6 73845741 73846087 -75670950 + L1MA7 LINE L1 5160 5528 -661 5 1148 332 209 81 116 chr6 73846088 73846261 -75670776 + B2_Mm2 SINE B2 15 181 -14 5 1148 470 282 166 34 chr6 73846280 73846816 -75670221 + L1MA7 LINE L1 5525 6131 -160 5 1148 2094 49 8 4 chr6 73846816 73847082 -75669955 + L1_Mus1 LINE L1 6301 6567 0 5 1148 647 202 11 7 chr6 73847586 73847751 -75669286 - Lx2B LINE L1 0 7008 6830 5 1148 3858 157 40 4 chr6 73847746 73848499 -75668538 - L1_Mur2 LINE L1 -196 5681 4902 5 1148 2011 158 97 50 chr6 73848503 73848928 -75668109 - MusHAL1 LINE L1 -944 2409 1955 5 1148 983 137 0 0 chr6 73848928 73849074 -75667963 - B1_Mus1 SINE Alu 0 148 3 5 1148 2011 158 97 50 chr6 73849074 73849143 -75667894 - MusHAL1 LINE L1 -1399 1954 1892 5 1148 9342 99 17 16 chr6 73849174 73849674 -75667363 - Lx3_Mus LINE L1 0 7009 6518 5 1148 3615 30 12 2 chr6 73849674 73850106 -75666931 + RLTR10C LTR ERVK 1 436 0 5 1148 9342 104 12 13 chr6 73850106 73851349 -75665688 - Lx3_Mus LINE L1 -492 6517 5270 5 1148 6892 79 5 1 chr6 73851362 73852355 -75664682 + Lx3_Mus LINE L1 4239 5235 -651 5 1148 5890 156 37 8 chr6 73852373 73853668 -75663369 - MusHAL1 LINE L1 -1446 1907 583 5 1148 180 0 0 0 chr6 73853668 73853688 -75663349 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 5 1148 948 141 56 9 chr6 73853688 73853707 -75663330 - MusHAL1 LINE L1 -2772 582 561 5 1148 509 44 15 0 chr6 73853707 73853775 -75663262 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1148 994 233 132 60 chr6 73853780 73854099 -75662938 - MTD LTR MaLR -53 366 25 5 1148 1452 63 5 0 chr6 73854266 73854455 -75662582 - L1_Mus1 LINE L1 0 6567 6378 5 1148 5493 79 14 17 chr6 73854455 73855602 -75661435 + L1_Mus1 LINE L1 5230 6369 -198 5 1148 1233 258 68 52 chr6 73855590 73856180 -75660857 - L1VL4 LINE L1 -5515 787 189 5 1148 1174 85 11 6 chr6 73856476 73856653 -75660384 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 5 1148 540 188 93 0 chr6 73858035 73858198 -75658839 + Lx2B LINE L1 6799 6991 -6 5 1148 980 249 212 6 chr6 73858229 73858540 -75658497 - MTC LTR MaLR -34 387 13 5 1148 782 271 28 34 chr6 73858899 73859208 -75657829 - MTEa LTR MaLR 0 379 21 5 1148 964 266 33 26 chr6 73860560 73860830 -75656207 + B4A SINE B4 3 274 -18 5 1148 186 143 0 0 chr6 73860882 73860917 -75656120 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1148 933 94 0 0 chr6 73861620 73861758 -75655279 + (TC)n Simple_repeat Simple_repeat 1 138 0 5 1148 252 59 0 0 chr6 73861758 73861791 -75655246 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1148 3706 130 13 67 chr6 73861887 73861949 -75655088 - L1_Mm LINE L1 -2624 3259 3194 5 1148 207 0 0 0 chr6 73861949 73861972 -75655065 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1148 3791 94 11 11 chr6 73861972 73862657 -75654380 - L1_Mm LINE L1 -2690 3193 2550 5 1148 6868 100 7 4 chr6 73862675 73863701 -75653336 + L1_Mus3 LINE L1 5588 6616 -22 5 1148 778 300 57 34 chr6 73865660 73866009 -75651028 + ORR1E LTR MaLR 3 359 0 5 1148 28 48 0 0 chr6 73866423 73866465 -75650572 + AT_rich Low_complexity Low_complexity 1 42 0 5 1148 275 269 28 46 chr6 73866479 73866588 -75650449 + GA-rich Low_complexity Low_complexity 3 109 0 5 1148 508 325 19 44 chr6 73866616 73866774 -75650263 - RSINE1 SINE B4 -10 155 2 5 1148 351 0 0 0 chr6 73867010 73867049 -75649988 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1148 827 103 17 0 chr6 73867049 73867165 -75649872 - PB1D9 SINE Alu -2 118 1 5 1148 261 364 52 26 chr6 73867580 73867735 -75649302 + MIR SINE MIR 66 224 -38 5 1148 7455 106 27 33 chr6 73868048 73869237 -75647800 + Lx3_Mus LINE L1 5817 6998 -11 5 1148 381 136 0 0 chr6 73870054 73870120 -75646917 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1148 1056 81 6 12 chr6 73870146 73870309 -75646728 + (TA)n Simple_repeat Simple_repeat 2 163 0 5 1148 671 195 22 44 chr6 73870326 73870508 -75646529 + Lx4A LINE L1 6038 6215 -843 5 1148 41 0 0 0 chr6 73870536 73870577 -75646460 + AT_rich Low_complexity Low_complexity 1 41 0 5 1148 844 183 52 12 chr6 73870590 73870801 -75646236 - Lx4A LINE L1 -500 6508 6289 5 1148 2754 172 74 9 chr6 73870845 73871397 -75645640 + Lx4A LINE L1 6462 7049 -9 5 1148 31304 93 14 12 chr6 73871791 73876913 -75640124 + L1Md_F2 LINE L1 446 5586 -297 5 1148 7835 60 2 2 chr6 73876913 73877909 -75639128 + L1Md_F2 LINE L1 5587 6582 0 5 1148 31304 78 16 9 chr6 73877909 73878079 -75638958 + L1Md_F2 LINE L1 5587 5727 -156 5 1148 3676 92 0 8 chr6 73878079 73878584 -75638453 - L1Md_F2 LINE L1 -19 6563 6063 5 1148 31304 69 23 0 chr6 73878584 73878934 -75638103 + L1Md_F2 LINE L1 5728 6095 -487 5 1148 450 0 0 0 chr6 73878989 73879039 -75637998 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1148 749 252 174 13 chr6 73879039 73879349 -75637688 - Lx9 LINE L1 -189 7455 7096 5 1148 2113 47 0 0 chr6 73879845 73880120 -75636917 - L1_Mm LINE L1 -649 5234 4960 5 1148 21 36 0 0 chr6 73880876 73880904 -75636133 + AT_rich Low_complexity Low_complexity 1 28 0 5 1148 2250 174 49 10 chr6 73880912 73881476 -75635561 - Lx4A LINE L1 0 7058 6359 5 1148 415 310 60 33 chr6 73882091 73882241 -75634796 + B3A SINE B2 4 157 -41 6 1148 726 294 159 21 chr6 73882328 73882763 -75634274 + Lx8 LINE L1 6976 7470 -3 6 1148 37 0 0 0 chr6 73882778 73882815 -75634222 + AT_rich Low_complexity Low_complexity 1 37 0 6 1148 2955 78 17 12 chr6 73883072 73883477 -75633560 + MTB_Mm LTR MaLR 1 407 0 6 1148 749 290 18 0 chr6 73883996 73884213 -75632824 + ID_B1 SINE B4 2 222 -2 6 1148 1976 179 68 96 chr6 73884819 73885350 -75631687 - RLTR11A LTR ERVK -4 524 9 6 1148 226 50 50 0 chr6 73885570 73885610 -75631427 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1148 844 281 0 19 chr6 73885698 73885912 -75631125 - B3 SINE B2 -6 210 1 6 1148 521 320 25 25 chr6 73886494 73886654 -75630383 - RSINE1 SINE B4 0 165 6 6 1148 912 262 24 0 chr6 73886762 73886972 -75630065 - B3 SINE B2 0 216 2 6 1148 23 33 0 0 chr6 73887201 73887231 -75629806 + AT_rich Low_complexity Low_complexity 1 30 0 6 1148 1371 92 0 0 chr6 73887294 73887501 -75629536 + L1_Mur2 LINE L1 4712 4918 -959 6 1148 2257 243 32 36 chr6 73887543 73888060 -75628977 - Lx9 LINE L1 -1714 5930 5392 6 1148 1109 95 0 0 chr6 73888060 73888207 -75628830 - B1_Mm SINE Alu 0 147 1 6 1148 2481 239 31 38 chr6 73888207 73888539 -75628498 - Lx9 LINE L1 -456 5391 5051 6 1148 25 0 0 0 chr6 73888539 73888564 -75628473 + AT_rich Low_complexity Low_complexity 1 25 0 6 1148 4348 226 83 7 chr6 73888579 73889634 -75627403 - Lx4A LINE L1 -64 6994 5859 6 1148 4577 59 8 38 chr6 73889675 73890311 -75626726 + L1Md_F2 LINE L1 5956 6572 -10 6 1148 2768 148 22 97 chr6 73890331 73890409 -75626628 + L1_Mur2 LINE L1 5284 5360 -517 6 1148 1687 96 0 4 chr6 73890409 73890661 -75626376 + L1_Mus4 LINE L1 6384 6634 -2 6 1148 2768 148 22 97 chr6 73890661 73891179 -75625858 + L1_Mur2 LINE L1 5361 5835 -42 6 1148 350 206 93 43 chr6 73893033 73893195 -75623842 - Lx7 LINE L1 -4 7692 7523 6 1148 4313 203 65 24 chr6 73893213 73895619 -75621418 - L1_Mur3 LINE L1 -1339 4541 480 6 1148 2690 96 0 0 chr6 73895614 73895977 -75621060 - L1Md_F2 LINE L1 -420 6162 5800 6 1148 2992 69 5 7 chr6 73895977 73896384 -75620653 + L1_Mus1 LINE L1 6161 6566 -1 6 1148 472 256 108 36 chr6 73896434 73896600 -75620437 - L1_Mur3 LINE L1 -7029 683 506 6 1148 417 224 87 17 chr6 73896754 73896927 -75620110 + L1MDa LINE L1 2396 2580 -4053 6 1148 511 329 40 12 chr6 73897177 73897426 -75619611 - L1MA9 LINE L1 -393 5919 5664 6 1148 402 239 62 0 chr6 73897493 73897593 -75619444 - B3A SINE B2 -101 115 3 6 1148 532 266 124 42 chr6 73897604 73897958 -75619079 - L1MA9 LINE L1 -518 5665 5283 6 1148 916 168 152 0 chr6 73898045 73898236 -75618801 - URR1A DNA MER1_type 0 226 7 6 1148 513 284 129 57 chr6 73898278 73898867 -75618170 - L1MA9 LINE L1 -826 5317 4663 6 1148 734 327 116 3 chr6 73900578 73900863 -75616174 - MTE2b LTR MaLR -5 374 58 6 1148 364 160 231 15 chr6 73901081 73901281 -75615756 - Lx9 LINE L1 -2 7642 7401 6 1148 304 192 27 14 chr6 73901332 73901406 -75615631 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 6 1148 374 203 7 0 chr6 73901423 73901561 -75615476 + CT-rich Low_complexity Low_complexity 2 140 0 6 1148 518 289 53 7 chr6 73901759 73901909 -75615128 + RSINE1 SINE B4 3 159 -6 6 1148 676 83 18 0 chr6 73902194 73902303 -75614734 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 6 1148 370 315 0 18 chr6 73902305 73902415 -75614622 - RSINE1 SINE B4 0 165 58 6 1148 447 68 0 0 chr6 73903035 73903094 -75613943 + (TATG)n Simple_repeat Simple_repeat 2 60 0 6 1148 837 0 0 0 chr6 73903105 73903198 -75613839 + (TTCTC)n Simple_repeat Simple_repeat 1 93 0 6 1148 1395 35 0 0 chr6 73903199 73903372 -75613665 + (TCTCCC)n Simple_repeat Simple_repeat 2 174 0 6 1148 447 64 0 60 chr6 73903374 73903457 -75613580 + (TCCCC)n Simple_repeat Simple_repeat 3 80 0 6 1148 557 138 0 0 chr6 73904457 73904537 -75612500 - Lx5 LINE L1 -696 6354 6275 6 1148 701 223 50 13 chr6 73904531 73904690 -75612347 + Lx5 LINE L1 6883 7047 -3 6 1148 269 267 117 62 chr6 73904862 73904990 -75612047 - MER89 LTR ERV1 -203 356 222 6 1148 2125 62 37 17 chr6 73906019 73906316 -75610721 + IAPLTR2b LTR ERVK 1 303 -24 6 1148 3567 94 45 2 chr6 73906338 73906851 -75610186 - L1_Mus1 LINE L1 -34 6533 5999 6 1148 31289 97 12 13 chr6 73906847 73912222 -75604815 - L1Md_F LINE L1 -151 5732 360 6 1148 273 336 56 21 chr6 73912251 73912394 -75604643 - MER110 LTR ERV1 -241 250 103 6 1148 1083 297 82 6 chr6 73913502 73913845 -75603192 + MTEa LTR MaLR 3 374 0 6 1148 234 277 43 0 chr6 73914649 73914743 -75602294 - L1M4c LINE L1 -3576 2806 2709 6 1148 388 341 15 23 chr6 73914836 73915129 -75601908 - L1M4c LINE L1 -3834 2548 2256 6 1148 31 26 0 0 chr6 73915129 73915167 -75601870 + AT_rich Low_complexity Low_complexity 1 38 0 6 1148 5160 233 46 18 chr6 73915167 73915448 -75601589 - Lx9 LINE L1 -9 7635 7310 6 1148 2229 119 46 0 chr6 73915448 73915793 -75601244 - L1_Mus3 LINE L1 0 6638 6278 6 1148 5160 233 46 18 chr6 73915793 73916764 -75600273 - Lx9 LINE L1 -335 7309 6347 6 1148 253 286 9 80 chr6 73916757 73916981 -75600056 + Lx9 LINE L1 5904 6111 -1533 6 1148 412 283 132 11 chr6 73917076 73917265 -75599772 - B3 SINE B2 -2 214 3 6 1148 418 339 69 51 chr6 73917482 73917815 -75599222 + Charlie4a DNA MER1_type 155 493 -15 6 1148 839 280 79 23 chr6 73917846 73918366 -75598671 - L1M4c LINE L1 -4238 2146 1598 6 1148 992 300 46 48 chr6 73918529 73918900 -75598137 + MTE2a LTR MaLR 10 379 0 6 1148 290 261 161 11 chr6 73918902 73918995 -75598042 + MTE2a-int LTR MaLR 3 109 -1149 6 1148 186 43 0 0 chr6 73919006 73919029 -75598008 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6 1148 6891 117 11 20 chr6 73919046 73919679 -75597358 - L1_Mus4 LINE L1 -6 6630 6006 6 1148 6821 78 8 0 chr6 73919679 73920565 -75596472 - RLTR13B1 LTR ERVK 0 893 1 6 1148 6891 127 15 12 chr6 73920565 73921273 -75595764 - L1_Mus4 LINE L1 -631 6005 5288 6 1148 2647 113 5 0 chr6 73921271 73921670 -75595367 + MusHAL1 LINE L1 1103 1503 -1209 6 1148 15056 61 29 0 chr6 73921670 73923545 -75593492 - MERVL-int LTR ERVL -711 4774 2846 6 1148 2213 64 55 0 chr6 73923545 73923857 -75593180 + MusHAL1 LINE L1 1501 1829 -883 6 1148 378 358 8 100 chr6 73923860 73924111 -75592926 + MTE2a-int LTR MaLR 118 345 -1025 6 143 1333 314 111 21 chr6 73924131 73924610 -75592427 + MTE2a-int LTR MaLR 545 1066 -514 6 1149 27 0 0 0 chr6 73924675 73924702 -75592335 + AT_rich Low_complexity Low_complexity 1 27 0 6 1149 852 298 18 40 chr6 73924702 73924929 -75592108 - B4 SINE B4 -66 226 5 6 1149 1076 122 20 10 chr6 73924965 73925163 -75591874 - Lx4B LINE L1 -905 6153 5954 6 1149 3294 183 69 20 chr6 73925154 73925818 -75591219 + Lx4B LINE L1 6362 7058 0 6 1149 681 326 3 61 chr6 73925879 73926189 -75590848 - Lx9 LINE L1 -447 7197 6906 6 1149 485 283 61 29 chr6 73926187 73926464 -75590573 + L1M3 LINE L1 4396 4681 -1459 6 1149 785 322 71 41 chr6 73928701 73928793 -75588244 + MTEb LTR MaLR 30 129 -250 6 1149 339 25 0 0 chr6 73928793 73928833 -75588204 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1149 785 322 71 41 chr6 73928833 73929080 -75587957 + MTEb LTR MaLR 130 378 -1 6 1149 668 338 89 45 chr6 73929890 73930417 -75586620 + MLT1E2 LTR MaLR 53 602 -25 6 1149 23 0 0 0 chr6 73930561 73930584 -75586453 + AT_rich Low_complexity Low_complexity 1 23 0 6 1149 511 316 135 25 chr6 73930805 73931087 -75585950 + Lx8 LINE L1 7075 7387 -86 6 1149 25 31 0 0 chr6 73931094 73931126 -75585911 + AT_rich Low_complexity Low_complexity 1 32 0 6 1149 267 133 0 0 chr6 73931134 73931179 -75585858 + (TA)n Simple_repeat Simple_repeat 2 46 0 6 1149 29 28 0 0 chr6 73931188 73931224 -75585813 + AT_rich Low_complexity Low_complexity 1 36 0 6 1149 28 48 0 0 chr6 73931634 73931676 -75585361 + AT_rich Low_complexity Low_complexity 1 42 0 6 1149 3847 88 12 9 chr6 73932365 73932926 -75584111 + Lx3A LINE L1 5956 6518 -463 6 1149 2872 153 51 0 chr6 73932924 73933433 -75583604 - L1_Mur2 LINE L1 -1255 4622 4088 6 1149 6712 179 20 1 chr6 73933433 73934043 -75582994 + Lx LINE L1 4617 5232 -651 6 1149 540 0 0 0 chr6 73934043 73934103 -75582934 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1149 6712 126 12 18 chr6 73934103 73935332 -75581705 + Lx LINE L1 5233 6465 -189 6 1149 486 0 0 0 chr6 73935341 73935395 -75581642 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 6 1149 723 184 0 0 chr6 73935401 73935542 -75581495 + (TG)n Simple_repeat Simple_repeat 2 142 0 6 1149 3232 110 6 6 chr6 73935574 73936051 -75580986 + Lx3A LINE L1 6504 6980 -1 6 1149 482 272 107 59 chr6 73936158 73936428 -75580609 - MER119 DNA MER1_type -69 514 232 6 1149 446 297 0 122 chr6 73936463 73936548 -75580489 - B4A SINE B4 0 292 228 6 1149 936 268 0 0 chr6 73936548 73936757 -75580280 - B3 SINE B2 -6 210 2 6 1149 446 301 2 113 chr6 73936757 73936875 -75580162 - B4A SINE B4 -65 227 118 6 1149 396 253 154 15 chr6 73937238 73937428 -75579609 - B4 SINE B4 -77 215 1 6 1149 27 0 0 0 chr6 73938109 73938136 -75578901 + AT_rich Low_complexity Low_complexity 1 27 0 6 1149 1631 36 0 0 chr6 73938136 73938328 -75578709 - B2_Mm1t SINE B2 0 193 2 6 1149 237 108 0 0 chr6 73939419 73939456 -75577581 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1149 3456 272 18 25 chr6 73940069 73941027 -75576010 + RMER1C Other Other 392 1342 0 6 1149 436 221 102 62 chr6 73941254 73941435 -75575602 - Lx4B LINE L1 -8 7050 6876 6 1149 580 329 83 79 chr6 73942077 73942354 -75574683 + B4 SINE B4 15 292 0 6 1149 245 254 0 60 chr6 73942356 73942423 -75574614 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1149 21 0 0 0 chr6 73942512 73942533 -75574504 + AT_rich Low_complexity Low_complexity 1 21 0 6 1149 592 331 100 50 chr6 73942634 73942993 -75574044 - MLT1B LTR MaLR -2 388 12 6 1149 677 273 25 44 chr6 73944922 73945125 -75571912 + MTE2a LTR MaLR 181 379 0 6 1149 282 143 0 0 chr6 73945191 73945240 -75571797 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1149 396 0 0 0 chr6 73946119 73946163 -75570874 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1149 342 350 91 41 chr6 73947126 73947426 -75569611 - ORR1E LTR MaLR -54 316 1 6 1149 295 380 82 63 chr6 73947856 73948159 -75568878 + MER74C LTR ERVL 11 319 -141 6 1149 574 199 34 160 chr6 73948808 73948942 -75568095 + Lx9 LINE L1 7410 7517 -127 6 1149 357 24 0 0 chr6 73948942 73948984 -75568053 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1149 574 199 34 160 chr6 73948984 73949118 -75567919 + Lx9 LINE L1 7518 7644 0 6 1149 582 27 0 0 chr6 73949359 73949434 -75567603 + L1Md_A LINE L1 6508 6582 0 7 1149 2976 54 59 0 chr6 73949541 73949929 -75567108 + L1_Mus2 LINE L1 6154 6564 -2 7 1149 5073 144 40 53 chr6 73951090 73952103 -75564934 - Lx2A LINE L1 -9 6999 6001 7 1149 1578 157 8 0 chr6 73952106 73952374 -75564663 - MusHAL1 LINE L1 -1090 1622 1353 7 1149 1209 221 0 11 chr6 73952371 73952645 -75564392 + L1_Mur2 LINE L1 5037 5307 -570 7 1149 473 337 56 11 chr6 73952646 73952826 -75564211 + MTD LTR MaLR 110 297 -122 7 1149 407 313 29 15 chr6 73953067 73953203 -75563834 - ID_B1 SINE B4 -1 223 86 7 1149 240 351 0 0 chr6 73954238 73954315 -75562722 - B3A SINE B2 -119 79 3 7 1149 183 80 0 0 chr6 73954706 73954731 -75562306 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1149 259 315 56 93 chr6 73954945 73955106 -75561931 - MIR3 SINE MIR -87 189 33 7 1149 948 117 0 0 chr6 73955531 73955676 -75561361 + (TTTC)n Simple_repeat Simple_repeat 1 145 0 7 1149 4500 86 18 2 chr6 73955736 73956356 -75560681 - Lx3_Mus LINE L1 -8 7001 6372 7 1149 1859 99 36 4 chr6 73956374 73956649 -75560388 + Lx3_Mus LINE L1 6091 6374 -635 7 1149 594 321 72 11 chr6 73957271 73957511 -75559526 + ORR1E LTR MaLR 40 321 -58 7 1149 855 0 0 0 chr6 73957511 73957606 -75559431 + (TTC)n Simple_repeat Simple_repeat 3 97 0 7 1149 430 317 84 18 chr6 73957606 73957663 -75559374 + ORR1E LTR MaLR 322 378 -1 7 1149 2909 128 33 8 chr6 73957746 73958225 -75558812 - Lx LINE L1 -6 6648 6158 7 1149 492 287 67 29 chr6 73959539 73959747 -75557290 - B3 SINE B2 0 216 1 7 1149 243 0 0 0 chr6 73959896 73959923 -75557114 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1149 23 54 0 0 chr6 73959997 73960034 -75557003 + AT_rich Low_complexity Low_complexity 1 37 0 7 1149 458 320 54 13 chr6 73960039 73960188 -75556849 + RSINE1 SINE B4 11 165 0 7 1149 366 107 0 0 chr6 73960192 73960248 -75556789 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 7 1149 1593 178 25 93 chr6 73960250 73960534 -75556503 + ORR1B1 LTR MaLR 65 351 -43 7 1149 667 211 228 0 chr6 73960534 73960705 -75556332 + B3 SINE B2 2 211 -5 7 1149 1593 178 25 93 chr6 73960705 73960774 -75556263 + ORR1B1 LTR MaLR 352 394 0 7 1149 360 293 0 0 chr6 73960802 73960884 -75556153 - PB1D10 SINE Alu -13 104 23 7 1149 276 352 70 0 chr6 73961604 73961732 -75555305 + B1F SINE Alu 3 139 -10 7 1149 7003 46 2 16 chr6 73962765 73963642 -75553395 - L1Md_F2 LINE L1 0 6582 5718 7 1149 675 289 163 18 chr6 73963642 73963723 -75553314 + MTE2a LTR MaLR 57 144 -235 7 1149 4004 173 16 9 chr6 73963723 73964410 -75552627 + RLTR17 LTR ERVK 1 692 0 7 1149 675 289 163 18 chr6 73964410 73964610 -75552427 + MTE2a LTR MaLR 145 379 0 7 1149 297 191 79 0 chr6 73964872 73964935 -75552102 - ID4_ SINE ID -14 69 2 7 1149 423 0 0 0 chr6 73965312 73965359 -75551678 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1149 556 348 110 30 chr6 73965368 73965427 -75551610 - B4A SINE B4 -35 257 204 7 1149 3207 48 8 0 chr6 73965427 73965820 -75551217 - MTA_Mm LTR MaLR 0 396 1 7 1149 556 348 110 30 chr6 73965820 73965997 -75551040 - B4A SINE B4 -89 203 2 7 1149 229 333 32 48 chr6 73966256 73966382 -75550655 - MTEb LTR MaLR 0 379 256 7 1149 830 275 110 8 chr6 73967474 73967720 -75549317 + B4 SINE B4 2 272 -20 7 1149 518 316 103 5 chr6 73967890 73968084 -75548953 + ORR1E LTR MaLR 3 215 -144 7 1149 250 204 111 0 chr6 73968119 73968173 -75548864 + ORR1E LTR MaLR 306 365 -14 7 1149 276 53 0 0 chr6 73968359 73968397 -75548640 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 1149 244 311 70 66 chr6 73968502 73968729 -75548308 - L1MB5 LINE L1 -197 5977 5750 7 1149 356 231 90 8 chr6 73968753 73968875 -75548162 - L1MB5 LINE L1 -498 5676 5545 7 1149 257 221 184 35 chr6 73969043 73969184 -75547853 + MER58A DNA MER1_type 47 208 -16 7 1149 628 291 31 16 chr6 73969218 73969410 -75547627 - B3A SINE B2 -2 196 2 7 1149 1222 81 0 21 chr6 73969756 73969945 -75547092 + L1Md_F2 LINE L1 6398 6582 0 7 1149 1515 260 57 10 chr6 73971333 73971722 -75545315 - MTD LTR MaLR -2 417 11 7 1149 302 0 26 0 chr6 73972164 73972202 -75544835 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1149 1107 84 0 0 chr6 73972282 73972460 -75544577 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 7 1149 366 311 28 0 chr6 73972490 73972596 -75544441 - RSINE1 SINE B4 -55 110 2 7 1149 273 367 41 54 chr6 73972856 73973098 -75543939 - L2a LINE L2 -276 3150 2912 7 1149 3305 192 28 11 chr6 73973182 73973828 -75543209 - Lx2B LINE L1 0 7000 6344 7 1149 714 109 73 0 chr6 73973828 73973938 -75543099 + Lx2B LINE L1 5902 6019 -981 7 1149 2104 195 53 5 chr6 73973948 73974246 -75542791 - Lx2B LINE L1 -657 6343 6043 7 1149 198 0 0 0 chr6 73974246 73974268 -75542769 + (TCCC)n Simple_repeat Simple_repeat 3 24 0 7 1149 2104 195 53 5 chr6 73974268 73974401 -75542636 - Lx2B LINE L1 -958 6042 5891 7 1149 1158 266 133 10 chr6 73974889 73975296 -75541741 - Lx9 LINE L1 -45 7599 7143 7 1149 263 160 0 0 chr6 73975540 73975590 -75541447 - MT2A LTR ERVL 0 533 484 7 1149 501 17 0 0 chr6 73975860 73975918 -75541119 + (AAATG)n Simple_repeat Simple_repeat 3 60 0 7 1149 262 333 120 0 chr6 73975976 73976084 -75540953 - MTEa LTR MaLR -258 121 1 7 1149 255 103 0 0 chr6 73976164 73976203 -75540834 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 7 1149 645 235 15 0 chr6 73976222 73976358 -75540679 + B1_Mur4 SINE Alu 13 150 0 7 1149 880 286 61 15 chr6 73976365 73976628 -75540409 - Lx6 LINE L1 -18 7442 7168 7 1149 277 254 0 0 chr6 73976894 73976953 -75540084 - B3 SINE B2 -155 61 3 7 1149 3491 129 19 45 chr6 73977711 73978293 -75538744 - RMER2 LTR ERV1 0 567 1 7 1149 3123 27 3 0 chr6 73978312 73978682 -75538355 + L1Md_T LINE L1 6211 6581 -1 7 1149 552 284 96 15 chr6 73978899 73979035 -75538002 + RSINE1 SINE B4 13 159 -6 7 1149 21 36 0 0 chr6 73979238 73979266 -75537771 + AT_rich Low_complexity Low_complexity 1 28 0 7 1149 180 0 0 0 chr6 73979757 73979777 -75537260 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1149 315 0 0 0 chr6 73981117 73981152 -75535885 + (TTTCC)n Simple_repeat Simple_repeat 1 35 0 7 1149 1392 56 0 0 chr6 73981152 73981330 -75535707 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 7 1149 218 205 0 0 chr6 73981330 73981369 -75535668 + T-rich Low_complexity Low_complexity 2 40 0 7 1149 520 322 69 15 chr6 73981373 73981575 -75535462 - B3A SINE B2 0 216 3 7 1149 1392 70 21 0 chr6 73981704 73981890 -75535147 + B2_Mm2 SINE B2 2 191 -4 7 1149 312 369 18 43 chr6 73982129 73982409 -75534628 + B4A SINE B4 2 274 -18 7 1149 322 233 14 14 chr6 73982473 73982547 -75534490 + HAL1-3A_ME LINE L1 1976 2049 -809 7 1149 347 130 0 13 chr6 73982548 73982626 -75534411 + (GA)n Simple_repeat Simple_repeat 2 78 0 7 1149 447 300 80 7 chr6 73982982 73983171 -75533866 + MLT1A1 LTR MaLR 166 408 0 7 1149 25 90 0 0 chr6 73984334 73984401 -75532636 + AT_rich Low_complexity Low_complexity 1 67 0 7 1149 483 271 49 0 chr6 73985180 73985302 -75531735 + B1F SINE Alu 13 140 -9 7 1149 21 0 0 0 chr6 73985601 73985622 -75531415 + AT_rich Low_complexity Low_complexity 1 21 0 7 1149 1204 48 7 0 chr6 73986081 73986228 -75530809 + B1_Mus1 SINE Alu 1 148 0 7 1149 222 37 0 0 chr6 73986230 73986257 -75530780 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1149 180 0 0 0 chr6 73986277 73986297 -75530740 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 7 1149 2952 74 3 0 chr6 73986799 73987189 -75529848 + L1_Mus2 LINE L1 6176 6566 0 7 1149 430 286 162 1 chr6 73987629 73987801 -75529236 - B3 SINE B2 0 198 2 7 1149 648 140 0 0 chr6 73989343 73989450 -75527587 + (CA)n Simple_repeat Simple_repeat 2 108 0 7 1149 323 315 0 58 chr6 73989864 73990019 -75527018 - Lx6 LINE L1 -4 7456 7311 7 1149 540 312 99 23 chr6 73990780 73991042 -75525995 + RMER15 LTR ERVL 277 558 -17 7 1149 2318 147 42 5 chr6 73991180 73991590 -75525447 - Lx2B LINE L1 -983 6017 5593 7 1149 4085 190 59 25 chr6 73991587 73992488 -75524549 + Lx2B LINE L1 6068 6998 -2 7 1149 27 29 0 0 chr6 73992516 73992550 -75524487 + AT_rich Low_complexity Low_complexity 1 34 0 7 1149 3406 66 0 5 chr6 73993094 73993534 -75523503 + L1_Mus1 LINE L1 6130 6567 0 7 1149 225 65 0 0 chr6 73994060 73994091 -75522946 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1149 695 307 19 5 chr6 73994136 73994349 -75522688 + B3 SINE B2 1 216 0 7 1149 1121 54 0 7 chr6 73995164 73995314 -75521723 + (GA)n Simple_repeat Simple_repeat 1 149 0 7 1149 518 230 26 14 chr6 73995374 73995497 -75521540 + Lx4A LINE L1 6770 6951 -107 7 1149 21 57 0 0 chr6 73995508 73995543 -75521494 + AT_rich Low_complexity Low_complexity 1 35 0 7 1149 31 26 0 0 chr6 73995644 73995682 -75521355 + AT_rich Low_complexity Low_complexity 1 38 0 7 1149 1064 236 93 7 chr6 73995818 73996108 -75520929 + Lx2B LINE L1 6686 7000 0 7 1149 621 305 102 0 chr6 73996475 73996701 -75520336 + RMER1C Other Other 745 993 -349 7 1149 454 176 36 27 chr6 73996708 73996819 -75520218 + RMER1C Other Other 1227 1338 -4 7 1149 505 273 39 0 chr6 73997011 73997165 -75519872 + Lx9 LINE L1 7240 7399 -245 7 1149 776 142 162 19 chr6 73997165 73997345 -75519692 - ORR1C2 LTR MaLR 0 384 149 7 1149 481 297 170 25 chr6 73997498 73997733 -75519304 + B4 SINE B4 4 272 -20 7 1149 2904 53 0 0 chr6 73997938 73998295 -75518742 - L1Md_F2 LINE L1 -294 6288 5932 7 1149 321 62 0 0 chr6 73998295 73998343 -75518694 + L1Md_F2 LINE L1 6523 6570 -12 7 1149 207 69 0 0 chr6 73998784 73998813 -75518224 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 7 1149 290 115 19 0 chr6 73998822 73998874 -75518163 + (TA)n Simple_repeat Simple_repeat 2 54 0 7 1149 24 67 0 0 chr6 73998970 73999015 -75518022 + AT_rich Low_complexity Low_complexity 1 45 0 8 1149 446 298 43 150 chr6 73999154 73999314 -75517723 - B3 SINE B2 -8 208 72 8 1149 342 67 0 0 chr6 73999314 73999359 -75517678 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1149 446 298 43 150 chr6 73999359 73999431 -75517606 - B3 SINE B2 -145 71 1 8 1149 210 191 24 0 chr6 73999502 73999544 -75517493 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 8 1149 458 346 76 27 chr6 74000001 74000224 -75516813 - MLT1A0 LTR MaLR -131 234 1 1 1149 378 314 80 0 chr6 74000235 74000410 -75516627 - MLT1A0-int LTR MaLR -15 1720 1532 1 1149 266 0 29 0 chr6 74000790 74000824 -75516213 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1149 27 29 0 0 chr6 74000958 74000992 -75516045 + AT_rich Low_complexity Low_complexity 1 34 0 3 1149 402 21 0 0 chr6 74001192 74001239 -75515798 + (TATG)n Simple_repeat Simple_repeat 1 47 0 4 1149 1019 54 0 0 chr6 74001240 74001369 -75515668 - B1_Mus1 SINE Alu -6 142 14 5 1149 264 77 0 0 chr6 74001408 74001447 -75515590 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1149 524 42 14 0 chr6 74001449 74001520 -75515517 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 1149 21 0 0 0 chr6 74001636 74001657 -75515380 + AT_rich Low_complexity Low_complexity 1 21 0 8 1149 619 337 58 0 chr6 74001898 74002088 -75514949 - ID_B1 SINE B4 0 224 24 9 1149 188 34 0 33 chr6 74002888 74002918 -75514119 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1149 202 182 36 0 chr6 74003093 74003148 -75513889 + (TATAA)n Simple_repeat Simple_repeat 3 59 0 1 1149 259 318 0 11 chr6 74003643 74003732 -75513305 - PB1D10 SINE Alu -23 94 7 1 1149 333 367 124 47 chr6 74003900 74004377 -75512660 + MLT1A1 LTR MaLR 1 409 -182 1 1149 402 299 83 30 chr6 74004349 74004518 -75512519 + MLT1A1 LTR MaLR 215 392 -16 1 1149 226 314 0 28 chr6 74005171 74005243 -75511794 + ID4_ SINE ID 8 77 -6 1 1149 288 0 0 0 chr6 74005255 74005287 -75511750 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1149 21 36 0 0 chr6 74006015 74006043 -75510994 + AT_rich Low_complexity Low_complexity 1 28 0 1 1149 375 304 105 76 chr6 74006613 74006784 -75510253 + MLT1C LTR MaLR 10 185 -282 1 1149 530 46 0 0 chr6 74006784 74006849 -75510188 - L1Md_F2 LINE L1 -300 6282 6218 1 1149 1945 99 3 14 chr6 74006849 74007136 -75509901 + L1Md_F2 LINE L1 6284 6567 -15 1 1149 229 333 115 35 chr6 74007310 74007397 -75509640 + MLT1A1 LTR MaLR 365 458 -9 1 1149 5379 42 5 13 chr6 74008356 74009030 -75508007 - L1Md_F2 LINE L1 0 6582 5915 1 1149 240 91 0 0 chr6 74009030 74009063 -75507974 + L1_Mm LINE L1 3070 3102 -2781 2 1149 2069 80 3 24 chr6 74009066 74009359 -75507678 - L1_Mus1 LINE L1 0 6567 6281 2 1149 27 29 0 0 chr6 74009670 74009704 -75507333 + AT_rich Low_complexity Low_complexity 1 34 0 2 1149 294 352 16 8 chr6 74010432 74010555 -75506482 - B4A SINE B4 -2 290 167 2 1149 303 161 0 0 chr6 74010640 74010696 -75506341 + (CAT)n Simple_repeat Simple_repeat 1 56 0 2 1149 219 239 43 0 chr6 74010904 74010950 -75506087 - B4A SINE B4 -196 96 49 2 1149 180 0 0 0 chr6 74011388 74011408 -75505629 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1149 206 271 0 0 chr6 74013397 74013467 -75503570 + (TCTG)n Simple_repeat Simple_repeat 3 72 0 2 1149 420 20 0 0 chr6 74013992 74014041 -75502996 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1149 6494 181 19 16 chr6 74014288 74015858 -75501179 - Lx2B LINE L1 -760 6240 4649 2 1149 4529 155 39 8 chr6 74015857 74016710 -75500327 + Lx3C LINE L1 3799 4677 -1200 3 1149 300 309 136 0 chr6 74017005 74017115 -75499922 - B4 SINE B4 -166 126 2 3 1149 3223 191 35 12 chr6 74017831 74018513 -75498524 - Lx3C LINE L1 0 6976 6279 3 1149 3201 165 28 6 chr6 74018514 74019144 -75497893 + Lx3C LINE L1 5292 5935 -1041 3 1149 2926 37 0 22 chr6 74019144 74019506 -75497531 + IAPEY2_LTR LTR ERVK 1 354 -3 3 1149 3201 166 64 29 chr6 74019506 74019830 -75497207 + Lx3C LINE L1 5936 6268 -708 3 1149 477 292 6 49 chr6 74019854 74020016 -75497021 - B3A SINE B2 -1 197 43 3 1149 397 32 48 0 chr6 74020033 74020095 -75496942 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 3 1149 33 25 0 0 chr6 74020311 74020351 -75496686 + AT_rich Low_complexity Low_complexity 1 40 0 3 1149 569 184 19 64 chr6 74020362 74020519 -75496518 - Lx3C LINE L1 0 6976 6827 3 1149 230 81 27 0 chr6 74020548 74020585 -75496452 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 3 1149 796 233 33 11 chr6 74020585 74020767 -75496270 - Lx4A LINE L1 -5 7053 6868 3 1149 1848 135 63 0 chr6 74020767 74021085 -75495952 - Lx4A LINE L1 -925 6133 5796 4 1149 2248 146 17 6 chr6 74021083 74021441 -75495596 + Lx4A LINE L1 5427 5788 -89 4 1149 229 181 0 100 chr6 74021902 74021982 -75495055 - Lx9 LINE L1 0 7644 7573 4 1149 290 179 18 0 chr6 74021971 74022027 -75495010 + Lx9 LINE L1 6649 6705 -939 4 1149 215 114 23 0 chr6 74022084 74022128 -75494909 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 4 1149 1175 68 0 0 chr6 74022131 74022277 -75494760 - B1_Mm SINE Alu 0 147 2 4 1149 1527 264 82 22 chr6 74022542 74022992 -75494045 + Lx7 LINE L1 6459 6935 -761 4 1149 477 151 0 0 chr6 74023036 74023122 -75493915 + GA-rich Low_complexity Low_complexity 2 87 0 4 1149 246 182 30 0 chr6 74023394 74023460 -75493577 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1149 357 62 0 0 chr6 74023465 74023513 -75493524 + (CATA)n Simple_repeat Simple_repeat 1 48 0 4 1149 413 236 87 0 chr6 74023777 74023904 -75493133 + Lx7 LINE L1 7559 7696 0 4 1149 30 27 0 0 chr6 74023913 74023950 -75493087 + AT_rich Low_complexity Low_complexity 1 37 0 4 1149 347 407 6 30 chr6 74023957 74024124 -75492913 - RSINE1 SINE B4 0 165 3 5 1149 1139 90 0 0 chr6 74024555 74024722 -75492315 + L1_Mus1 LINE L1 6398 6564 -3 5 1149 665 281 0 72 chr6 74024841 74024900 -75492137 - B3A SINE B2 -6 192 143 5 1149 309 26 0 0 chr6 74024900 74024938 -75492099 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1149 665 281 0 72 chr6 74024938 74025085 -75491952 - B3A SINE B2 -56 142 1 5 1149 288 352 46 0 chr6 74026990 74027098 -75489939 - PB1 SINE Alu -14 113 1 5 1149 2651 82 13 0 chr6 74027190 74027570 -75489467 + L1_Mus3 LINE L1 6254 6638 0 5 1149 353 365 48 48 chr6 74027771 74028039 -75488998 - MLT1C LTR MaLR -198 269 2 5 1149 328 333 111 71 chr6 74028271 74028678 -75488359 - MLT1C-int LTR MaLR -109 1380 958 5 1149 227 214 75 37 chr6 74028739 74028846 -75488191 + RMER17A LTR ERVK 353 463 -288 5 1149 267 299 39 0 chr6 74029396 74029473 -75487564 + RSINE1 SINE B4 47 126 -39 5 1149 22 80 0 0 chr6 74029647 74029697 -75487340 + AT_rich Low_complexity Low_complexity 1 50 0 5 1149 233 200 32 32 chr6 74029988 74030050 -75486987 - Lx2 LINE L1 -1229 5768 5707 6 1149 663 342 71 0 chr6 74030172 74030438 -75486599 + B4A SINE B4 2 286 -6 6 1149 546 16 0 0 chr6 74030484 74030547 -75486490 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 1149 380 313 65 31 chr6 74030565 74030867 -75486170 + L1_Mur3 LINE L1 5547 5868 -12 6 1149 323 353 54 10 chr6 74032837 74032949 -75484088 + RSINE1 SINE B4 2 119 -46 6 1149 24 32 0 0 chr6 74033005 74033036 -75484001 + AT_rich Low_complexity Low_complexity 1 31 0 6 1149 842 76 0 8 chr6 74033283 74033403 -75483634 + (GAAAA)n Simple_repeat Simple_repeat 2 120 0 6 1149 34 65 0 0 chr6 74033864 74033926 -75483111 + AT_rich Low_complexity Low_complexity 1 62 0 6 1149 428 0 19 0 chr6 74034060 74034112 -75482925 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1149 289 321 19 0 chr6 74034139 74034245 -75482792 - Lx7 LINE L1 -399 7297 7190 6 1149 735 12 0 0 chr6 74034279 74034363 -75482674 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 7 1149 1160 260 43 140 chr6 74034371 74034908 -75482129 - Lx7 LINE L1 -149 7547 7063 7 1149 2668 199 56 23 chr6 74034941 74035427 -75481610 - L1_Mur3 LINE L1 -150 5730 5213 7 1149 712 187 0 0 chr6 74035427 74035582 -75481455 - Lx3_Mus LINE L1 0 7009 6855 7 1149 2668 199 56 23 chr6 74035582 74035758 -75481279 - L1_Mur3 LINE L1 -668 5212 5046 7 1149 957 42 0 0 chr6 74035762 74035880 -75481157 + (TTCTC)n Simple_repeat Simple_repeat 1 118 0 7 1149 1550 0 0 16 chr6 74035881 74036064 -75480973 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1149 1214 80 11 0 chr6 74036110 74036285 -75480752 + (TTCTC)n Simple_repeat Simple_repeat 2 178 0 7 1149 445 204 202 6 chr6 74036302 74036419 -75480618 - L1_Mur3 LINE L1 -3096 2784 2652 7 1149 405 0 0 0 chr6 74036419 74036464 -75480573 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1149 445 204 202 6 chr6 74036464 74036514 -75480523 - L1_Mur3 LINE L1 -3229 2651 2586 7 1149 2892 125 10 10 chr6 74036528 74037057 -75479980 + MMVL30-int LTR ERV1 2423 3425 -1638 7 1149 3842 86 11 44 chr6 74037055 74037604 -75479433 + RLTR1B-int LTR ERV1 2692 3222 -77 7 1149 556 158 22 57 chr6 74037609 74037757 -75479280 + RLTR1B-int LTR ERV1 3221 3299 0 7 1149 4675 77 18 0 chr6 74037757 74038368 -75478669 + RLTR1 LTR ERV1 1 622 -2 7 1149 426 212 71 0 chr6 74038369 74038482 -75478555 - L1_Mur3 LINE L1 -3293 2587 2467 7 1149 1137 74 0 0 chr6 74038514 74038662 -75478375 + B1_Mus1 SINE Alu 1 148 0 8 1149 468 0 0 0 chr6 74038731 74038783 -75478254 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1149 262 134 15 15 chr6 74038814 74038882 -75478155 + GA-rich Low_complexity Low_complexity 2 69 0 8 1149 2173 173 72 20 chr6 74038889 74039443 -75477594 - L1_Mur3 LINE L1 -3840 2040 1458 7 1149 1447 251 13 40 chr6 74039446 74039844 -75477193 - L1_Mur3 LINE L1 -7035 693 307 7 1149 1807 304 94 29 chr6 74039926 74040650 -75476387 + Lx8 LINE L1 6699 7469 -4 8 1149 2669 58 12 0 chr6 74040736 74041078 -75475959 + ORR1A1 LTR MaLR 1 346 0 8 1149 599 355 31 35 chr6 74041216 74041505 -75475532 - RMER15 LTR ERVL -15 560 273 8 1149 3344 5 0 0 chr6 74044149 74044524 -75472513 + L1Md_A LINE L1 6208 6582 0 8 1149 21 36 0 0 chr6 74045280 74045308 -75471729 + AT_rich Low_complexity Low_complexity 1 28 0 8 1149 6459 177 61 32 chr6 74045308 74046862 -75470175 - Lx5 LINE L1 -3 7047 5439 8 1149 7108 88 25 0 chr6 74046866 74048039 -75468998 - L1_Mus1 LINE L1 0 6567 5371 8 1149 523 319 25 65 chr6 74048501 74048702 -75468335 + B3A SINE B2 2 194 -4 9 1149 21 57 0 0 chr6 74048713 74048748 -75468289 + AT_rich Low_complexity Low_complexity 1 35 0 9 1149 25 31 0 0 chr6 74048976 74049008 -75468029 + AT_rich Low_complexity Low_complexity 1 32 0 9 1149 621 251 210 27 chr6 74049021 74049349 -75467688 - Lx9 LINE L1 -41 7603 7216 9 1149 700 325 0 42 chr6 74049349 74049561 -75467476 - B3 SINE B2 -9 207 5 9 1149 468 0 0 0 chr6 74049664 74049716 -75467321 + (TTA)n Simple_repeat Simple_repeat 2 53 0 9 1149 225 246 0 0 chr6 74049867 74049924 -75467113 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 9 1149 237 194 78 65 chr6 74050179 74050256 -75466781 + MLT2B2 LTR ERVL 1 78 -437 9 1149 1435 198 77 110 chr6 74050357 74050804 -75466233 + MT2B LTR ERVL 1 558 -43 9 1149 237 65 0 0 chr6 74050804 74050835 -75466202 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1149 1435 175 35 110 chr6 74050835 74050881 -75466156 + MT2B LTR ERVL 559 601 0 9 1149 356 88 18 0 chr6 74050891 74050948 -75466089 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 1 1149 219 36 0 0 chr6 74050948 74050976 -75466061 + (CAT)n Simple_repeat Simple_repeat 2 29 0 1 1149 607 296 57 29 chr6 74051434 74051643 -75465394 + B3 SINE B2 1 215 -1 1 1149 293 310 84 76 chr6 74051668 74051712 -75465325 + ORR1B1 LTR MaLR 3 43 -351 1 1149 1461 198 118 6 chr6 74051712 74052052 -75464985 + ORR1C1 LTR MaLR 1 378 0 1 1149 5773 219 40 27 chr6 74052052 74053541 -75463496 + ORR1C1-int LTR MaLR 1 1509 0 1 1149 587 276 116 9 chr6 74053541 74053757 -75463280 + ORR1C1 LTR MaLR 1 239 -128 1 1149 6550 36 6 0 chr6 74054748 74055547 -75461490 - L1Md_F3 LINE L1 -14 6570 5767 1 1150 22 0 0 0 chr6 74056064 74056086 -75460951 + AT_rich Low_complexity Low_complexity 1 22 0 1 1150 182 247 26 52 chr6 74057307 74057384 -75459653 + L3 LINE CR1 1136 1210 -3279 1 1150 882 325 10 7 chr6 74057588 74057891 -75459146 + Lx8 LINE L1 6305 6608 -865 1 1150 740 30 0 0 chr6 74058000 74058099 -75458938 + L1Md_T LINE L1 6483 6581 -1 1 1150 209 208 52 0 chr6 74058447 74058524 -75458513 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 1 1150 1796 184 3 6 chr6 74058530 74058842 -75458195 - Lx4B LINE L1 -246 6812 6502 1 1150 2945 189 15 13 chr6 74058840 74059446 -75457591 - L1_Mur2 LINE L1 -17 5860 5254 1 1150 2322 126 0 0 chr6 74059428 74059784 -75457253 + L1_Mur2 LINE L1 4883 5238 -639 1 1150 292 351 90 80 chr6 74059873 74060161 -75456876 + B4 SINE B4 2 292 0 1 1150 450 281 67 6 chr6 74060447 74060612 -75456425 - Lx7 LINE L1 -1642 6054 5880 1 1150 373 169 14 14 chr6 74060675 74060747 -75456290 + L1Md_F LINE L1 87 158 -6361 1 1150 4224 103 0 0 chr6 74060754 74061374 -75455663 - L1_Mm LINE L1 -3276 2607 1988 1 1150 1416 266 88 29 chr6 74061374 74061921 -75455116 - Lx7 LINE L1 0 7696 7118 1 1150 180 0 0 0 chr6 74062002 74062022 -75455015 + (CATTT)n Simple_repeat Simple_repeat 4 23 0 1 1150 15415 92 11 1 chr6 74062358 74063861 -75453176 - L1Md_F LINE L1 -2394 3489 1963 1 1150 297 0 0 0 chr6 74063861 74063894 -75453143 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1150 15415 115 21 2 chr6 74063894 74065616 -75451421 - L1Md_F LINE L1 -3921 1962 214 1 1150 400 62 0 30 chr6 74065650 74065716 -75451321 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 1 1150 8093 49 0 1 chr6 74065736 74066763 -75450274 - L1Md_F2 LINE L1 -14 6568 5541 1 1150 500 349 82 15 chr6 74067092 74067287 -75449750 - B3A SINE B2 -2 214 7 1 1150 36 78 0 10 chr6 74067508 74067581 -75449456 + AT_rich Low_complexity Low_complexity 1 73 0 1 1150 614 330 5 0 chr6 74067581 74067775 -75449262 + B3A SINE B2 4 198 0 1 1150 36 78 0 10 chr6 74067775 74067804 -75449233 + AT_rich Low_complexity Low_complexity 1 29 0 1 1150 209 163 20 0 chr6 74067896 74067945 -75449092 + CT-rich Low_complexity Low_complexity 1 50 0 1 1150 23 54 0 0 chr6 74068042 74068079 -75448958 + AT_rich Low_complexity Low_complexity 1 37 0 1 1150 336 243 66 0 chr6 74069445 74069581 -75447456 + Lx9 LINE L1 7499 7643 -1 1 1150 213 298 0 17 chr6 74070114 74070172 -75446865 + B4A SINE B4 89 145 -147 1 1150 362 283 59 13 chr6 74070120 74070238 -75446799 + B1F SINE Alu 10 130 -17 1 1150 231 114 0 0 chr6 74070298 74070342 -75446695 + (CTAA)n Simple_repeat Simple_repeat 4 47 0 1 1150 418 262 126 67 chr6 74070443 74070644 -75446393 + L1M1 LINE L1 5377 5589 -711 1 1150 322 195 23 0 chr6 74070644 74070731 -75446306 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 1150 271 323 31 23 chr6 74070731 74070861 -75446176 + L1_Rod LINE L1 5714 5844 -3 1 1150 275 324 14 0 chr6 74071866 74071940 -75445097 - ID4_ SINE ID -1 82 8 1 1150 828 305 67 4 chr6 74072021 74072291 -75444746 - B4A SINE B4 -4 288 2 1 1150 4282 113 10 79 chr6 74073058 74073401 -75443636 + RMER17A LTR ERVK 1 334 -417 1 1150 1035 88 0 0 chr6 74073401 74073571 -75443466 + (TCCTG)n Simple_repeat Simple_repeat 3 172 0 1 1150 4282 113 10 79 chr6 74073571 74074034 -75443003 + RMER17A LTR ERVK 335 751 0 1 1150 537 271 167 76 chr6 74074063 74074327 -75442710 - B4A SINE B4 0 292 5 1 1150 492 18 0 0 chr6 74075039 74075096 -75441941 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1150 27 62 0 0 chr6 74075550 74075598 -75441439 + AT_rich Low_complexity Low_complexity 1 48 0 1 1150 23 33 0 0 chr6 74075712 74075742 -75441295 + AT_rich Low_complexity Low_complexity 1 30 0 1 1150 351 324 8 112 chr6 74075755 74075880 -75441157 - RSINE1 SINE B4 0 165 54 1 1150 186 43 0 0 chr6 74075885 74075908 -75441129 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 1 1150 2072 230 93 6 chr6 74075925 74076440 -75440597 - Lx2B LINE L1 -10 6990 6431 1 1150 2648 96 34 0 chr6 74076438 74076824 -75440213 + Lx3A LINE L1 6126 6524 -457 1 1150 11715 29 1 0 chr6 74076813 74078213 -75438824 - L1_Mm LINE L1 -662 5221 3821 1 1150 1765 75 0 0 chr6 74078189 74078430 -75438607 - L1_Mm LINE L1 -2945 2938 2698 1 1150 590 92 0 0 chr6 74078429 74078505 -75438532 + L1_Mm LINE L1 5487 5562 -321 1 1150 7018 34 2 1 chr6 74078505 74079347 -75437690 + L1Md_A LINE L1 5738 6580 -2 1 1150 2121 62 4 18 chr6 74079347 74079628 -75437409 + Lx3A LINE L1 6509 6785 -196 1 1150 308 389 19 77 chr6 74079910 74079937 -75437100 - B4A SINE B4 -2 290 269 1 1150 270 0 0 0 chr6 74079937 74079967 -75437070 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1150 672 48 0 0 chr6 74079967 74080050 -75436987 + (GA)n Simple_repeat Simple_repeat 1 84 0 1 1150 308 389 19 77 chr6 74080050 74080230 -75436807 - B4A SINE B4 -24 268 95 1 1150 603 331 72 46 chr6 74080470 74081229 -75435808 - L1MB5 LINE L1 -47 6127 5347 1 1150 259 318 82 50 chr6 74082491 74082650 -75434387 + MER90 LTR ERV1 322 485 -90 1 1150 1140 298 162 14 chr6 74082660 74083234 -75433803 + Lx9 LINE L1 6390 7192 -452 1 1150 1030 65 30 0 chr6 74083458 74083627 -75433410 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 1 1150 31 0 0 0 chr6 74083789 74083820 -75433217 + AT_rich Low_complexity Low_complexity 1 31 0 1 1150 685 41 10 10 chr6 74085453 74085551 -75431486 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1150 240 86 0 0 chr6 74085635 74085670 -75431367 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1 1150 4177 60 13 2 chr6 74086077 74086612 -75430425 + L1Md_F2 LINE L1 6019 6559 -23 1 1150 750 60 0 0 chr6 74086612 74086712 -75430325 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 1150 12471 144 37 89 chr6 74086733 74091791 -75425246 + L1Md_F2 LINE L1 319 5585 -298 1 1150 7508 82 2 0 chr6 74091791 74092784 -75424253 + L1Md_F2 LINE L1 5587 6581 -1 1 1150 10176 188 67 165 chr6 74092784 74093119 -75423918 + L1Md_F2 LINE L1 4899 5243 -640 1 1150 339 85 0 0 chr6 74093119 74093166 -75423871 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1150 10176 188 67 165 chr6 74093166 74093511 -75423526 + L1Md_F2 LINE L1 5244 5586 -297 1 1150 7342 87 0 9 chr6 74093512 74094516 -75422521 + L1Md_F2 LINE L1 5588 6582 0 1 1150 4981 87 11 7 chr6 74094516 74095221 -75421816 + L1Md_F2 LINE L1 5862 6569 -13 1 1150 2827 202 95 8 chr6 74095376 74096010 -75421027 + RLTR17 LTR ERVK 1 689 -3 1 1150 567 276 39 16 chr6 74096106 74096235 -75420802 + ID_B1 SINE B4 79 210 -14 1 1150 420 300 18 0 chr6 74096622 74096792 -75420245 + (TA)n Simple_repeat Simple_repeat 2 174 0 1 1150 602 272 167 0 chr6 74097127 74097307 -75419730 + B3 SINE B2 1 210 -6 1 1150 503 231 44 15 chr6 74098970 74099106 -75417931 - RMER1C Other Other -2 1340 1201 1 1150 507 73 0 0 chr6 74099109 74099177 -75417860 + (GGA)n Simple_repeat Simple_repeat 3 70 0 1 1150 1993 234 22 28 chr6 74099181 74099643 -75417394 - RMER1C Other Other -148 1194 736 1 1150 2335 237 140 92 chr6 74099643 74100619 -75416418 + RLTR25B LTR ERVK 1 1023 -5 1 1150 465 306 33 39 chr6 74100637 74100790 -75416247 - RMER1C Other Other -707 635 484 1 1150 362 273 22 11 chr6 74100793 74100882 -75416155 + RMER1C Other Other 717 806 -536 1 1150 276 296 138 66 chr6 74100883 74101064 -75415973 - B3 SINE B2 -14 202 9 1 1150 620 323 48 85 chr6 74101349 74101643 -75415394 - MTE2a LTR MaLR 0 379 97 1 1150 309 135 0 0 chr6 74101647 74101699 -75415338 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1150 424 314 94 43 chr6 74101846 74102219 -75414818 + L1MCc LINE L1 1124 1515 -4908 1 1150 545 340 75 28 chr6 74102317 74102635 -75414402 - MLT1A0 LTR MaLR -5 360 28 1 1150 459 366 0 86 chr6 74102969 74103190 -75413847 - ID_B1 SINE B4 -12 212 11 1 1150 3072 224 43 70 chr6 74104233 74104382 -75412655 + Lx9 LINE L1 4862 5022 -825 1 1150 3234 43 8 2 chr6 74104382 74104776 -75412261 + MTA_Mm LTR MaLR 1 396 0 1 1150 3072 224 43 70 chr6 74104776 74105627 -75411410 + Lx9 LINE L1 5023 5835 -12 1 1150 297 0 0 0 chr6 74105627 74105660 -75411377 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1150 922 279 63 55 chr6 74105660 74105671 -75411366 + Lx9 LINE L1 5872 5889 -1755 1 1150 5881 164 39 15 chr6 74105671 74106736 -75410301 - Lx4A LINE L1 -3 7055 5966 1 1150 922 279 63 55 chr6 74106736 74107088 -75409949 + Lx9 LINE L1 5890 6245 -1399 1 1150 982 265 73 0 chr6 74107120 74107365 -75409672 + Lx9 LINE L1 6312 6574 -1070 1 1150 5869 101 3 57 chr6 74107363 74108319 -75408718 + L1Md_A LINE L1 440 1344 -5380 1 1150 15852 42 1 0 chr6 74110666 74112591 -75404446 + L1_Mm LINE L1 3661 5586 -297 1 1150 7772 53 3 12 chr6 74112591 74113594 -75403443 + L1Md_F2 LINE L1 5587 6580 -2 1 1150 15852 42 1 0 chr6 74113594 74113619 -75403418 + L1_Mm LINE L1 5587 5611 -272 1 1150 1786 264 141 24 chr6 74113595 74114483 -75402554 + Lx9 LINE L1 6565 7556 -88 1 1150 1233 308 31 34 chr6 74115504 74115890 -75401147 - MTD LTR MaLR -15 404 20 1 1150 194 0 39 0 chr6 74116537 74116563 -75400474 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1 1150 423 0 0 0 chr6 74116570 74116617 -75400420 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1150 448 333 118 15 chr6 74117856 74118051 -75398986 + MLT1E1 LTR MaLR 407 621 -33 1 1150 447 19 0 0 chr6 74118404 74118456 -75398581 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1150 526 399 39 39 chr6 74118486 74118770 -75398267 - B4A SINE B4 -8 284 1 1 1150 23 33 0 0 chr6 74119397 74119427 -75397610 + AT_rich Low_complexity Low_complexity 1 30 0 1 1150 4748 247 26 152 chr6 74119488 74120735 -75396302 + Lx6 LINE L1 5878 6901 -559 1 1150 4603 64 6 55 chr6 74120735 74121392 -75395645 + L1_Mus2 LINE L1 5942 6566 0 1 1150 4748 247 26 152 chr6 74121392 74121951 -75395086 + Lx6 LINE L1 6902 7457 -3 1 1150 21 0 0 0 chr6 74122208 74122229 -75394808 + AT_rich Low_complexity Low_complexity 1 21 0 1 1150 689 291 48 32 chr6 74122532 74122720 -75394317 + Lx8 LINE L1 7124 7314 -159 1 1150 991 86 17 28 chr6 74122794 74122974 -75394063 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 1 1150 447 267 52 0 chr6 74123119 74123235 -75393802 + B1F SINE Alu 20 141 -8 2 1150 207 0 0 0 chr6 74123241 74123264 -75393773 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1150 24 0 0 0 chr6 74123500 74123524 -75393513 + AT_rich Low_complexity Low_complexity 1 24 0 2 1150 511 237 11 0 chr6 74123620 74123797 -75393240 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1150 369 285 40 68 chr6 74124813 74124901 -75392136 + L1MA5 LINE L1 6067 6157 -143 2 1150 1030 268 71 23 chr6 74124901 74125252 -75391785 + ORR1D2 LTR MaLR 1 368 -2 2 1150 369 285 40 68 chr6 74125252 74125340 -75391697 + L1MA5 LINE L1 6158 6238 -62 2 1150 1664 221 52 66 chr6 74125552 74125974 -75391063 + MTC LTR MaLR 4 419 -2 2 1150 5107 36 3 2 chr6 74126003 74126616 -75390421 + L1Md_F2 LINE L1 5958 6571 -11 2 1150 19128 124 183 6 chr6 74127088 74131182 -75385855 + L1_Mus1 LINE L1 599 5417 -466 2 1150 6396 96 11 8 chr6 74131161 74132056 -75384981 + L1_Mus1 LINE L1 5667 6564 -3 2 1150 186 71 0 0 chr6 74132056 74132084 -75384953 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 2 1150 7556 78 1 0 chr6 74132101 74133081 -75383956 + L1_Mus1 LINE L1 5587 6567 0 2 1150 21 71 0 0 chr6 74133271 74133313 -75383724 + AT_rich Low_complexity Low_complexity 1 42 0 2 1150 276 241 53 18 chr6 74133681 74133795 -75383242 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 2 1150 636 14 0 0 chr6 74133821 74133894 -75383143 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 2 1150 2796 135 2 11 chr6 74133894 74134337 -75382700 - Lx LINE L1 -8 6646 6208 2 1150 402 367 98 16 chr6 74135217 74135596 -75381441 + Lx8 LINE L1 6916 7325 -148 2 1150 2591 69 57 16 chr6 74136257 74136627 -75380410 - L1_Mus2 LINE L1 -1 6565 6181 2 1150 766 46 0 0 chr6 74136941 74137049 -75379988 - L1Md_T LINE L1 0 6582 6475 2 1150 24 0 0 0 chr6 74137859 74137883 -75379154 + AT_rich Low_complexity Low_complexity 1 24 0 2 1150 1666 231 90 5 chr6 74137930 74138318 -75378719 + MTC LTR MaLR 1 421 0 2 1150 24 32 0 0 chr6 74138358 74138389 -75378648 + AT_rich Low_complexity Low_complexity 1 31 0 2 1150 27 0 0 0 chr6 74139115 74139142 -75377895 + AT_rich Low_complexity Low_complexity 1 27 0 2 1150 184 266 86 25 chr6 74139179 74139260 -75377777 - L4 LINE RTE -620 1409 1324 2 1150 526 203 78 39 chr6 74139451 74139579 -75377458 + B1_Mm SINE Alu 5 137 -10 2 1150 297 0 0 0 chr6 74139579 74139612 -75377425 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 1150 31010 111 24 2 chr6 74139644 74141780 -75375257 + L1Md_F LINE L1 341 2526 -3357 2 1150 3498 15 2 0 chr6 74141780 74142175 -75374862 + MTA_Mm LTR MaLR 1 396 0 2 1150 9340 14 19 1 chr6 74142175 74143253 -75373784 + MTA_Mm-int LTR MaLR 1 1098 0 2 1150 3475 18 2 0 chr6 74143253 74143648 -75373389 + MTA_Mm LTR MaLR 1 396 0 2 1150 31010 89 0 3 chr6 74143648 74146698 -75370339 + L1Md_F LINE L1 2527 5567 -316 2 1150 503 318 31 0 chr6 74146769 74146898 -75370139 + RSINE1 SINE B4 2 134 -31 2 1150 6093 74 17 5 chr6 74147333 74148152 -75368885 - L1Md_F2 LINE L1 -1 6581 5753 2 1150 23 54 0 0 chr6 74148654 74148691 -75368346 + AT_rich Low_complexity Low_complexity 1 37 0 2 1150 251 316 58 13 chr6 74149474 74149628 -75367409 + HAL1 LINE L1 1503 1663 -844 2 1150 335 274 48 38 chr6 74149882 74150068 -75366969 + L1MB4 LINE L1 5670 5857 -323 2 1150 21 36 0 0 chr6 74150280 74150308 -75366729 + AT_rich Low_complexity Low_complexity 1 28 0 2 1150 225 158 0 26 chr6 74150541 74150580 -75366457 - Charlie12 DNA MER1_type -182 2691 2654 2 1150 410 244 0 0 chr6 74150755 74150837 -75366200 + RLTR18B LTR ERVK 427 508 -4 2 1150 278 292 56 35 chr6 74151125 74151267 -75365770 + RLTR23 LTR ERV1 255 399 -31 2 1150 1321 96 27 0 chr6 74151837 74152025 -75365012 - B2_Mm2 SINE B2 -2 193 1 2 1150 415 67 13 26 chr6 74152468 74152545 -75364492 + (TTTTTG)n Simple_repeat Simple_repeat 3 78 0 2 1150 1027 103 14 0 chr6 74152549 74152694 -75364343 - B1_Mm SINE Alu 0 147 1 2 1150 306 98 0 0 chr6 74152734 74152775 -75364262 - U2 snRNA snRNA -1 187 147 2 1150 1839 213 70 18 chr6 74152792 74153477 -75363560 - Lx4B LINE L1 -11 6989 5711 2 1150 257 330 27 27 chr6 74154922 74155034 -75362003 + B4A SINE B4 10 121 -171 2 1150 316 323 54 12 chr6 74155595 74155761 -75361276 - MLT1B LTR MaLR -28 362 190 2 1150 349 116 29 0 chr6 74155847 74155916 -75361121 + (TCTCCC)n Simple_repeat Simple_repeat 3 73 0 2 1150 363 269 3 21 chr6 74155941 74156238 -75360799 + (TG)n Simple_repeat Simple_repeat 1 291 0 2 1150 267 281 94 55 chr6 74157438 74157467 -75359570 - MTD LTR MaLR -15 404 375 2 1150 555 16 0 0 chr6 74157467 74157531 -75359506 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1150 384 325 290 22 chr6 74157531 74157816 -75359221 - MTD LTR MaLR -45 374 13 2 1150 702 331 63 71 chr6 74158034 74158430 -75358607 - MER77 LTR ERVL -13 594 158 2 1150 676 390 58 18 chr6 74159059 74159505 -75357532 + MT2A LTR ERVL 1 464 -69 2 1150 262 243 18 26 chr6 74159506 74159620 -75357417 + (TTATA)n Simple_repeat Simple_repeat 2 114 0 2 1150 276 190 24 12 chr6 74159652 74159737 -75357300 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 1150 347 365 95 14 chr6 74160133 74160344 -75356693 + LTR16C LTR ERVL 196 423 -66 2 1150 253 159 0 0 chr6 74160774 74160818 -75356219 - RMER6C LTR ERVK -368 388 345 2 1150 288 242 58 78 chr6 74160877 74160980 -75356057 - PB1D9 SINE Alu -16 104 4 2 1150 506 262 0 46 chr6 74160980 74161065 -75355972 - MT2B LTR ERVL -341 260 181 2 1150 606 187 37 0 chr6 74161049 74161156 -75355881 - RMER6C LTR ERVK -579 111 1 2 1150 627 260 11 87 chr6 74161156 74161298 -75355739 + B3 SINE B2 84 211 -5 2 1150 381 298 123 72 chr6 74161307 74161625 -75355412 - L1M2 LINE L1 -1455 4688 4355 2 1150 871 289 101 33 chr6 74161649 74162404 -75354633 - L1M2 LINE L1 -1843 4300 3495 2 1150 456 19 0 0 chr6 74162450 74162503 -75354534 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1150 204 241 0 0 chr6 74162503 74162561 -75354476 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1150 228 318 36 27 chr6 74162607 74162717 -75354320 - B3 SINE B2 0 216 106 2 1150 2781 122 47 7 chr6 74162842 74163294 -75353743 + Lx3A LINE L1 6507 6976 -5 2 1150 31 88 0 0 chr6 74163806 74163886 -75353151 + AT_rich Low_complexity Low_complexity 1 80 0 2 1150 458 318 31 50 chr6 74164049 74164208 -75352829 + B4A SINE B4 9 164 -128 2 1150 207 152 0 0 chr6 74164281 74164327 -75352710 + CT-rich Low_complexity Low_complexity 1 46 0 2 1150 5290 197 44 22 chr6 74164433 74165588 -75351449 + Lx3C LINE L1 5790 6970 -6 2 1150 288 0 0 0 chr6 74165636 74165668 -75351369 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1150 738 34 0 0 chr6 74166379 74166468 -75350569 + (GA)n Simple_repeat Simple_repeat 1 89 0 2 1150 23 0 0 0 chr6 74167031 74167054 -75349983 + AT_rich Low_complexity Low_complexity 1 23 0 2 1150 492 312 42 59 chr6 74167319 74168027 -75349010 + L1_Mur3 LINE L1 4753 5515 -782 2 1150 284 204 10 83 chr6 74168109 74168205 -75348832 + L1_Mur3 LINE L1 5476 5564 -733 2 1150 964 52 15 0 chr6 74168541 74168676 -75348361 + (TG)n Simple_repeat Simple_repeat 1 137 0 2 1150 396 55 0 0 chr6 74168676 74168731 -75348306 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1150 1115 137 5 11 chr6 74169020 74169204 -75347833 + B2_Mm2 SINE B2 3 185 -10 2 1150 712 241 104 17 chr6 74171878 74172051 -75344986 + B3 SINE B2 3 190 -26 2 1150 333 0 0 0 chr6 74172595 74172632 -75344405 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1150 537 16 0 0 chr6 74172632 74172694 -75344343 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 2 1150 566 305 62 5 chr6 74172783 74172994 -75344043 + ID_B1 SINE B4 2 224 0 2 1150 35 0 0 0 chr6 74173029 74173064 -75343973 + AT_rich Low_complexity Low_complexity 1 35 0 2 1150 633 280 72 40 chr6 74173351 74173600 -75343437 + MLT1C LTR MaLR 15 271 -196 2 1150 282 350 8 71 chr6 74173737 74173863 -75343174 - RSINE1 SINE B4 -37 128 11 2 1150 26 0 0 0 chr6 74174603 74174629 -75342408 + AT_rich Low_complexity Low_complexity 1 26 0 2 1150 984 52 8 0 chr6 74174632 74174766 -75342271 - L1_Mus2 LINE L1 -1 6565 6431 2 1150 231 263 50 0 chr6 74175160 74175259 -75341778 - Lx6 LINE L1 -21 7439 7336 2 1150 194 128 26 0 chr6 74176065 74176104 -75340933 + (TAA)n Simple_repeat Simple_repeat 2 41 0 2 1150 234 0 0 0 chr6 74176676 74176702 -75340335 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1150 15174 126 18 4 chr6 74176791 74180274 -75336763 + L1VL4 LINE L1 405 3920 -1966 2 1150 4962 106 22 3 chr6 74180274 74181010 -75336027 + L1_Mus3 LINE L1 5889 6638 0 2 1150 6923 123 19 1 chr6 74181021 74182281 -75334756 + L1_Mus4 LINE L1 5357 6636 0 2 1150 30 27 0 0 chr6 74182547 74182584 -75334453 + AT_rich Low_complexity Low_complexity 1 37 0 2 1150 392 189 143 9 chr6 74182592 74182704 -75334333 - Lx3B LINE L1 -4 6969 6843 2 1150 380 338 94 94 chr6 74183115 74183402 -75333635 + B4 SINE B4 5 291 -1 2 1150 366 23 0 0 chr6 74184151 74184194 -75332843 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1150 1022 298 53 27 chr6 74184365 74184757 -75332280 - Lx8 LINE L1 -86 7387 6978 2 1150 207 0 0 0 chr6 74184763 74184786 -75332251 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1150 588 252 7 7 chr6 74184786 74184922 -75332115 - B1_Mur1 SINE Alu -11 138 3 2 1150 702 298 153 37 chr6 74185246 74185862 -75331175 - L1MC1 LINE L1 -9 6324 5638 2 1150 1464 43 0 5 chr6 74185970 74186158 -75330879 + L1Md_F3 LINE L1 6396 6582 -2 2 1150 1037 88 7 0 chr6 74186590 74186727 -75330310 - B1_Mus1 SINE Alu -8 140 3 2 1151 1256 221 102 17 chr6 74187864 74188218 -75328819 - ORR1C2 LTR MaLR 0 384 1 2 1151 9010 3 0 0 chr6 74188694 74189816 -75327221 - L1Md_A LINE L1 0 6582 5461 2 1151 688 12 0 0 chr6 74189812 74189894 -75327143 - L1_Mm LINE L1 -3937 1946 1865 2 1151 193 362 56 7 chr6 74190127 74190269 -75326768 - MIRb SINE MIR -70 198 50 2 1151 1001 96 0 0 chr6 74190606 74190742 -75326295 + B1_Mus1 SINE Alu 1 136 -12 3 1151 324 0 0 0 chr6 74190743 74190779 -75326258 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 3 1151 259 346 71 68 chr6 74190779 74191117 -75325920 - MER92B LTR ERV1 -13 623 285 3 1151 1088 219 9 0 chr6 74192377 74192601 -75324436 - MTC LTR MaLR 0 421 196 3 1151 8043 52 4 0 chr6 74192601 74193766 -75323271 - L1Md_F2 LINE L1 -1 6581 5413 3 1151 1053 186 5 5 chr6 74193766 74193955 -75323082 - MTC LTR MaLR -219 202 14 3 1151 700 354 84 15 chr6 74194591 74195139 -75321898 + Lx8 LINE L1 6830 7415 -58 3 1151 1158 56 0 0 chr6 74195196 74195340 -75321697 - L1_Mus1 LINE L1 -413 6154 6011 3 1151 2084 65 4 14 chr6 74195340 74195621 -75321416 + L1_Mus1 LINE L1 6290 6567 0 3 1151 2882 45 0 22 chr6 74195725 74196091 -75320946 + L1Md_F2 LINE L1 6223 6580 -2 3 1151 24 32 0 0 chr6 74196183 74196214 -75320823 + AT_rich Low_complexity Low_complexity 1 31 0 3 1151 3593 65 2 0 chr6 74196398 74196858 -75320179 + L1_Mus1 LINE L1 6106 6566 -1 3 1151 223 281 24 12 chr6 74197045 74197128 -75319909 + GA-rich Low_complexity Low_complexity 2 85 0 3 1151 377 257 18 0 chr6 74197567 74197676 -75319361 - Lx7 LINE L1 -1 7695 7585 3 1151 333 0 0 0 chr6 74198049 74198086 -75318951 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1151 468 0 0 0 chr6 74198086 74198137 -75318900 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1151 369 0 0 0 chr6 74198137 74198177 -75318860 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1151 405 81 0 0 chr6 74198414 74198476 -75318561 + (T)n Simple_repeat Simple_repeat 1 62 0 3 1151 637 301 67 92 chr6 74200406 74200764 -75316273 + ORR1E LTR MaLR 4 352 -7 3 1151 557 315 54 5 chr6 74202346 74202550 -75314487 - B3 SINE B2 0 216 3 3 1151 214 95 48 0 chr6 74202562 74202604 -75314433 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3 1151 432 315 54 20 chr6 74202649 74202798 -75314239 - RSINE1 SINE B4 0 165 12 3 1151 577 202 0 0 chr6 74203046 74203160 -75313877 + L1_Mur3 LINE L1 4154 4267 -1613 3 1151 547 246 22 22 chr6 74203160 74203297 -75313740 - RLTR26 LTR ERVK -2 640 504 3 1151 480 283 44 38 chr6 74203313 74203471 -75313566 - RLTR26 LTR ERVK -107 535 377 3 1151 1277 115 41 14 chr6 74203499 74203720 -75313317 - Lx LINE L1 -1 6653 6427 3 1151 2672 104 24 29 chr6 74203721 74204138 -75312899 - Lx2 LINE L1 -352 6645 6231 3 1151 894 150 31 18 chr6 74204138 74204301 -75312736 - RLTR26 LTR ERVK -273 369 205 3 1151 1022 249 173 17 chr6 74204653 74205012 -75312025 - MTD LTR MaLR 0 419 5 3 1151 29 47 0 0 chr6 74205159 74205202 -75311835 + AT_rich Low_complexity Low_complexity 1 43 0 3 1151 369 0 0 0 chr6 74205704 74205745 -75311292 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1151 486 295 99 57 chr6 74205957 74206169 -75310868 + Lx8 LINE L1 6724 6944 -529 3 1151 1404 251 78 18 chr6 74206245 74206832 -75310205 + RMER19A LTR ERVK 1 736 -1 3 1151 702 356 36 0 chr6 74206859 74207112 -75309925 + Lx8 LINE L1 7080 7341 -132 3 1151 222 91 0 0 chr6 74207519 74207552 -75309485 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 1151 951 94 0 32 chr6 74210017 74210203 -75306834 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1151 839 133 19 12 chr6 74210229 74210489 -75306548 + (CA)n Simple_repeat Simple_repeat 1 262 0 3 1151 657 0 0 0 chr6 74211468 74211541 -75305496 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 3 1151 836 309 87 6 chr6 74212249 74212594 -75304443 + MTE2b LTR MaLR 3 375 -4 3 1151 3946 93 4 0 chr6 74212661 74213197 -75303840 - L1_Mus1 LINE L1 0 6567 6030 3 1151 943 83 0 0 chr6 74213197 74213329 -75303708 + L1_Mm LINE L1 1249 1380 -4503 3 1151 417 272 22 0 chr6 74213486 74213622 -75303415 - B1F2 SINE Alu 0 149 11 3 1151 258 322 49 16 chr6 74213619 74213742 -75303295 + LTR80A LTR ERVL 455 581 -2 3 1151 903 302 50 38 chr6 74214687 74215086 -75301951 - Lx8 LINE L1 -348 7125 6722 3 1151 218 290 83 31 chr6 74215187 74215283 -75301754 + RSINE1 SINE B4 15 115 -50 3 1151 4331 73 2 12 chr6 74215611 74216181 -75300856 - LTRIS2 LTR ERV1 0 564 1 3 1151 554 229 8 16 chr6 74216454 74216578 -75300459 + ORR1A4 LTR MaLR 1 123 -206 3 1151 297 109 0 0 chr6 74216583 74216629 -75300408 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1151 4090 60 12 40 chr6 74216629 74217001 -75300036 + LTRIS2 LTR ERV1 1 359 -205 3 1151 3702 36 29 0 chr6 74217001 74217448 -75299589 - L1Md_F3 LINE L1 0 6584 6125 3 1151 4090 60 12 40 chr6 74217448 74217653 -75299384 + LTRIS2 LTR ERV1 360 562 -2 3 1151 402 21 0 0 chr6 74217653 74217700 -75299337 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1151 1758 167 97 12 chr6 74217815 74218136 -75298901 - ORR1B1 LTR MaLR 0 394 47 3 1151 194 62 0 30 chr6 74218341 74218374 -75298663 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 1151 315 0 0 0 chr6 74218437 74218472 -75298565 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 3 1151 315 319 11 11 chr6 74218512 74218607 -75298430 - RSINE1 SINE B4 -69 96 2 3 1151 442 285 108 0 chr6 74218953 74219083 -75297954 - B3 SINE B2 -2 214 71 3 1151 337 118 39 13 chr6 74220932 74221009 -75296028 - L1_Mus3 LINE L1 -52 6586 6508 3 1151 523 258 0 77 chr6 74221248 74221391 -75295646 - RSINE1 SINE B4 -32 133 2 3 1151 720 199 77 15 chr6 74222401 74222606 -75294431 + ORR1B1 LTR MaLR 15 234 -160 3 1151 3140 219 3 63 chr6 74222606 74223362 -75293675 - MERVL-int LTR ERVL -4628 857 148 3 1151 237 65 0 0 chr6 74223792 74223823 -75293214 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1151 496 335 6 19 chr6 74224694 74224855 -75292182 + RSINE1 SINE B4 3 161 -4 3 1151 412 332 45 45 chr6 74225184 74225408 -75291629 + MER2 DNA MER2_type 60 283 -62 3 1151 8140 45 0 2 chr6 74225752 74226957 -75290080 - L1Md_F2 LINE L1 0 6582 5403 3 1151 501 32 0 0 chr6 74227427 74227490 -75289547 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1151 522 31 0 0 chr6 74227490 74227554 -75289483 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1151 576 42 0 0 chr6 74227554 74227624 -75289413 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1151 217 150 25 0 chr6 74227668 74227708 -75289329 + GA-rich Low_complexity Low_complexity 2 42 0 3 1151 186 43 0 0 chr6 74227844 74227867 -75289170 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1151 186 43 0 0 chr6 74227882 74227905 -75289132 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1151 633 317 55 50 chr6 74228504 74228866 -75288171 - MER89 LTR ERV1 -9 550 187 3 1151 222 118 0 0 chr6 74229193 74229227 -75287810 + (ATGGTG)n Simple_repeat Simple_repeat 5 38 0 3 1151 1914 132 64 0 chr6 74229350 74229676 -75287361 + L1_Mus4 LINE L1 6286 6632 -4 3 1151 222 37 0 0 chr6 74229706 74229733 -75287304 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1151 24 77 0 0 chr6 74229757 74229809 -75287228 + AT_rich Low_complexity Low_complexity 1 52 0 3 1151 1102 72 0 72 chr6 74229812 74230027 -75287010 - L1_Mus1 LINE L1 0 6567 6401 3 1151 5731 103 21 0 chr6 74230043 74230861 -75286176 - L1_Mus3 LINE L1 -1 6637 5803 3 1151 327 185 0 0 chr6 74231258 74231312 -75285725 - ORR1B2 LTR MaLR 0 367 314 3 1151 3401 124 8 6 chr6 74231312 74231822 -75285215 - L1_Mus3 LINE L1 -5 6633 6123 3 1151 890 154 201 0 chr6 74231822 74231991 -75285046 - ORR1B2 LTR MaLR -164 203 1 3 1151 378 0 0 0 chr6 74232282 74232324 -75284713 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1151 339 318 62 28 chr6 74233200 74233378 -75283659 - MLT1D LTR MaLR -4 501 318 3 1151 328 312 71 9 chr6 74233504 74233617 -75283420 - MLT1D LTR MaLR -385 120 1 3 1151 523 334 73 55 chr6 74233784 74234192 -75282845 - MLT1D-int LTR MaLR -170 1201 874 3 1151 260 356 50 25 chr6 74234276 74234397 -75282640 - MLT1D LTR MaLR -147 358 235 3 1151 312 304 27 90 chr6 74234455 74234680 -75282357 - MLT1D LTR MaLR -293 212 6 3 1151 420 331 60 20 chr6 74234934 74235184 -75281853 + L1M5 LINE L1 5527 5786 -408 3 1151 378 0 0 0 chr6 74235657 74235699 -75281338 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1151 651 175 0 0 chr6 74235699 74235853 -75281184 + GA-rich Low_complexity Low_complexity 1 154 0 3 1151 25 65 0 0 chr6 74235866 74235912 -75281125 + AT_rich Low_complexity Low_complexity 1 46 0 3 1151 180 0 0 0 chr6 74235977 74235997 -75281040 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1151 754 83 15 0 chr6 74236095 74236228 -75280809 + (GAAA)n Simple_repeat Simple_repeat 4 138 0 3 1151 19282 139 17 64 chr6 74236517 74238616 -75278421 - L1_Mus3 LINE L1 -4 6634 4904 3 1151 1293 127 49 9 chr6 74238616 74238839 -75278198 + L1_Mus3 LINE L1 6404 6635 -3 3 1151 19475 150 34 60 chr6 74238839 74243399 -75273638 - L1_Mus3 LINE L1 -945 4938 505 3 1151 206 182 0 35 chr6 74244346 74244403 -75272634 + (TATG)n Simple_repeat Simple_repeat 3 57 0 3 1151 245 347 14 7 chr6 74244555 74244703 -75272334 + GA-rich Low_complexity Low_complexity 2 150 0 3 1151 4667 34 2 0 chr6 74244752 74245308 -75271729 - L1Md_F2 LINE L1 -412 6170 5614 3 1151 2990 67 19 10 chr6 74245308 74245718 -75271319 + L1Md_F2 LINE L1 6169 6582 0 3 1151 273 29 0 0 chr6 74246625 74246659 -75270378 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1151 489 378 5 53 chr6 74246659 74246866 -75270171 - B4A SINE B4 -5 287 91 3 1151 2488 189 35 101 chr6 74248921 74249558 -75267479 + RMER19C LTR ERVK 1 594 -17 3 1151 289 0 49 0 chr6 74249558 74249599 -75267438 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 3 1151 2488 189 35 101 chr6 74249599 74249615 -75267422 + RMER19C LTR ERVK 595 610 -1 3 1151 1412 184 0 8 chr6 74249625 74249872 -75267165 + ORR1A4 LTR MaLR 77 321 -8 3 1151 3719 245 58 9 chr6 74250009 74250922 -75266115 - Lx5 LINE L1 -11 7039 6082 3 1151 732 241 12 144 chr6 74250918 74251257 -75265780 - L1_Mur3 LINE L1 -1868 4012 3719 3 1151 3459 18 2 0 chr6 74251622 74252017 -75265020 - MTA_Mm LTR MaLR 0 396 1 3 1151 8606 23 67 0 chr6 74252017 74253046 -75263991 - MTA_Mm-int LTR MaLR 0 1098 1 3 1151 3445 23 2 0 chr6 74253046 74253441 -75263596 - MTA_Mm LTR MaLR 0 396 1 3 1151 492 327 65 22 chr6 74253643 74253874 -75263163 + MTC LTR MaLR 20 260 -161 3 1151 329 273 65 0 chr6 74253936 74254013 -75263024 + MTC LTR MaLR 267 348 -73 3 1151 5800 81 4 1 chr6 74254374 74255157 -75261880 - L1_Mm LINE L1 -750 5133 4349 3 1151 3200 81 9 2 chr6 74255157 74255591 -75261446 + L1Md_F2 LINE L1 6146 6582 0 3 1151 189 107 0 0 chr6 74255615 74255643 -75261394 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1151 22 0 0 0 chr6 74256281 74256303 -75260734 + AT_rich Low_complexity Low_complexity 1 22 0 3 1151 1495 163 91 3 chr6 74256546 74256846 -75260191 - IAPEY3_LTR LTR ERVK -10 465 1 3 1151 493 310 92 48 chr6 74256913 74256965 -75260072 - B3 SINE B2 0 216 164 4 1151 411 98 0 0 chr6 74256965 74257026 -75260011 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1151 493 310 92 48 chr6 74257026 74257180 -75259857 - B3 SINE B2 -53 163 1 4 1151 1213 266 71 8 chr6 74260008 74260360 -75256677 - ORR1D1 LTR MaLR 0 374 1 4 1151 564 97 0 0 chr6 74260672 74260765 -75256272 + (TC)n Simple_repeat Simple_repeat 1 93 0 4 1151 996 106 0 0 chr6 74260783 74260953 -75256084 + (TC)n Simple_repeat Simple_repeat 1 170 0 4 1151 242 309 20 105 chr6 74260953 74261105 -75255932 - Lx8 LINE L1 -257 7216 7078 4 1151 27 62 0 0 chr6 74262544 74262592 -75254445 + AT_rich Low_complexity Low_complexity 1 48 0 4 1151 1057 103 7 0 chr6 74263010 74263155 -75253882 + B1_Mus1 SINE Alu 3 148 0 4 1151 189 107 0 0 chr6 74263156 74263184 -75253853 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1151 285 29 0 0 chr6 74263186 74263220 -75253817 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 4 1151 243 0 0 0 chr6 74263298 74263325 -75253712 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 4 1151 215 114 0 0 chr6 74263328 74263363 -75253674 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1151 1151 75 0 0 chr6 74263363 74263510 -75253527 - B1_Mus2 SINE Alu 0 147 1 4 1151 21 0 0 0 chr6 74263772 74263793 -75253244 + AT_rich Low_complexity Low_complexity 1 21 0 4 1151 5812 207 56 12 chr6 74263796 74265073 -75251964 - Lx4B LINE L1 -20 7038 5705 4 1151 412 149 0 0 chr6 74265073 74265140 -75251897 + Lx5 LINE L1 5641 5707 -1343 4 1151 22 35 0 0 chr6 74265172 74265201 -75251836 + AT_rich Low_complexity Low_complexity 1 29 0 4 1151 733 249 4 53 chr6 74265201 74265349 -75251688 + Lx7 LINE L1 7463 7598 -98 4 1151 4980 51 5 3 chr6 74265349 74265977 -75251060 + L1Md_F3 LINE L1 5954 6582 -2 4 1151 733 249 4 53 chr6 74265977 74266074 -75250963 + Lx7 LINE L1 7599 7694 -2 4 1151 998 277 85 12 chr6 74266175 74266515 -75250522 - Lx9 LINE L1 -222 7422 7058 4 1151 991 221 18 77 chr6 74266513 74266798 -75250239 + Lx9 LINE L1 6777 7044 -600 4 1151 567 342 91 32 chr6 74267863 74268232 -75248805 + MTE2a LTR MaLR 11 405 -14 4 1151 408 40 0 0 chr6 74268887 74268937 -75248100 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1151 391 374 65 0 chr6 74269156 74269295 -75247742 + RSINE1 SINE B4 5 152 -13 4 1151 372 94 0 0 chr6 74269307 74269360 -75247677 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1151 322 331 14 70 chr6 74269647 74269770 -75247267 + RMER15 LTR ERVL 276 398 -177 4 1151 378 0 0 0 chr6 74269770 74269812 -75247225 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1151 576 62 0 0 chr6 74269812 74269892 -75247145 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1151 322 331 14 70 chr6 74269892 74269910 -75247127 + RMER15 LTR ERVL 399 409 -166 4 1151 422 277 11 0 chr6 74272585 74272679 -75244358 + PB1D10 SINE Alu 1 95 -22 4 1151 398 348 7 28 chr6 74272679 74272725 -75244312 + ID_B1 SINE B4 82 218 -6 4 1151 445 184 11 22 chr6 74272746 74272835 -75244202 - L1_Mur3 LINE L1 -283 5597 5510 4 1151 4184 129 23 9 chr6 74272812 74273476 -75243561 - Lx2 LINE L1 -449 6548 5876 4 1151 5405 170 95 4 chr6 74273474 74274605 -75242432 + L1_Mur2 LINE L1 4435 5667 -210 4 1151 927 293 96 69 chr6 74274925 74275302 -75241735 + MTD LTR MaLR 19 405 -14 4 1151 396 0 0 0 chr6 74275445 74275489 -75241548 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1151 459 52 0 0 chr6 74275956 74276014 -75241023 + (TTA)n Simple_repeat Simple_repeat 3 60 0 4 1151 777 144 0 0 chr6 74276014 74276153 -75240884 - L1_Mus4 LINE L1 -19 6617 6479 4 1151 489 151 0 0 chr6 74276623 74276709 -75240328 + GA-rich Low_complexity Low_complexity 2 87 0 4 1151 436 208 24 5 chr6 74276709 74276839 -75240198 - ORR1C1 LTR MaLR -198 180 1 4 1151 1669 117 52 28 chr6 74277195 74277485 -75239552 + Lx LINE L1 6345 6641 -13 4 1151 896 35 9 0 chr6 74277489 74277605 -75239432 + (GAGAA)n Simple_repeat Simple_repeat 4 120 0 4 1151 414 0 0 0 chr6 74277842 74277888 -75239149 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 4 1151 213 336 0 80 chr6 74278169 74278282 -75238755 - B3A SINE B2 -89 109 6 4 1151 247 321 103 49 chr6 74279100 74279323 -75237714 + MER74A LTR ERVL 314 548 -10 4 1151 1606 107 0 25 chr6 74279385 74279624 -75237413 - L1_Mm LINE L1 -294 5589 5357 4 1151 331 21 21 0 chr6 74279668 74279716 -75237321 - L1_Mus2 LINE L1 0 6566 6518 4 1151 6622 91 66 3 chr6 74279716 74280738 -75236299 + L1_Mus3 LINE L1 5546 6631 -7 4 1151 22 35 0 0 chr6 74280927 74280956 -75236081 + AT_rich Low_complexity Low_complexity 1 29 0 4 1151 468 341 160 5 chr6 74281382 74281588 -75235449 + B4 SINE B4 47 284 -8 4 1151 6170 61 0 0 chr6 74283075 74283847 -75233190 + L1Md_F2 LINE L1 5799 6570 -12 4 1151 285 323 93 39 chr6 74285193 74285322 -75231715 + Tigger5 DNA MER2_type 12 147 -2259 4 1151 1011 129 28 6 chr6 74285339 74285518 -75231519 - Lx LINE L1 0 6654 6472 4 1151 290 162 0 29 chr6 74286068 74286138 -75230899 + (TTAGGG)n Simple_repeat Simple_repeat 2 69 0 4 1151 341 116 14 0 chr6 74286380 74286449 -75230588 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1151 2349 182 194 23 chr6 74286706 74287228 -75229809 - RMER19C LTR ERVK 0 611 1 4 1151 21 0 0 0 chr6 74287304 74287325 -75229712 + AT_rich Low_complexity Low_complexity 1 21 0 4 1151 753 326 101 7 chr6 74287582 74288197 -75228840 + L1MC3 LINE L1 6111 6783 -1002 4 1151 342 325 94 21 chr6 74288699 74289029 -75228008 + L1MC3 LINE L1 7332 7685 -100 4 1151 340 294 165 45 chr6 74289130 74289689 -75227348 - L1MA9 LINE L1 -353 5959 5334 4 1151 183 139 0 0 chr6 74289720 74289756 -75227281 + (TCC)n Simple_repeat Simple_repeat 2 37 0 4 1151 21 0 0 0 chr6 74290779 74290800 -75226237 + AT_rich Low_complexity Low_complexity 1 21 0 4 1151 232 245 156 21 chr6 74291447 74291543 -75225494 + RMER1B Other Other 32 140 -926 4 1151 288 239 63 32 chr6 74291553 74291648 -75225389 + RMER1B Other Other 318 415 -651 4 1151 3372 275 75 31 chr6 74291618 74292590 -75224447 + RMER1A Other Other 1 1015 -15 4 1151 453 19 0 0 chr6 74292598 74292652 -75224385 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1151 585 52 0 0 chr6 74292662 74292739 -75224298 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 1151 458 299 51 25 chr6 74293373 74293419 -75223618 - B3 SINE B2 -27 189 139 4 1151 531 66 0 0 chr6 74293419 74293495 -75223542 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1151 480 263 20 1 chr6 74293495 74293605 -75223432 - B3A SINE B2 -78 138 29 4 1151 1443 152 48 157 chr6 74293605 74293956 -75223081 - ORR1B1 LTR MaLR 0 394 82 4 1151 2286 254 92 55 chr6 74294003 74294707 -75222330 - Lx6 LINE L1 -2 7458 6729 4 1151 2345 261 26 9 chr6 74294723 74295288 -75221749 - Lx6 LINE L1 -839 6621 6047 4 1151 630 0 0 0 chr6 74296384 74296454 -75220583 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 4 1151 637 288 19 0 chr6 74297009 74297169 -75219868 - MTE2b LTR MaLR -2 377 215 4 1151 960 280 57 20 chr6 74297728 74298098 -75218939 - MTD LTR MaLR 0 419 10 4 1151 2019 47 0 11 chr6 74299087 74299347 -75217690 - L1Md_F3 LINE L1 -1 6583 6327 4 1151 284 340 28 7 chr6 74300289 74300434 -75216603 - Lx7 LINE L1 -360 7336 7189 4 1151 279 71 0 0 chr6 74300462 74300504 -75216533 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 4 1151 233 239 0 0 chr6 74300517 74300584 -75216453 - Lx6 LINE L1 -27 7433 7367 4 1151 279 327 99 0 chr6 74300831 74300932 -75216105 + RSINE1 SINE B4 3 113 -52 4 1151 336 24 0 0 chr6 74300945 74300986 -75216051 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1151 456 116 0 0 chr6 74300986 74301072 -75215965 + (GA)n Simple_repeat Simple_repeat 1 86 0 4 1151 22 88 0 0 chr6 74301954 74302011 -75215026 + AT_rich Low_complexity Low_complexity 1 57 0 4 1151 2106 195 19 28 chr6 74302038 74302508 -75214529 + RMER4A LTR ERVK 1 466 0 4 1151 342 283 25 58 chr6 74302577 74302697 -75214340 - Lx8 LINE L1 -141 7332 7217 4 1151 350 303 68 71 chr6 74303095 74303390 -75213647 - Zaphod DNA Tip100 -9 4022 3729 4 1151 3846 165 105 46 chr6 74303407 74304327 -75212710 + RLTR25A LTR ERVK 39 1103 0 4 1151 242 240 16 174 chr6 74304609 74304730 -75212307 - Zaphod DNA Tip100 -3370 661 560 4 1151 295 380 74 35 chr6 74305634 74305836 -75211201 + B4A SINE B4 1 210 -82 4 1151 959 291 82 99 chr6 74305904 74306159 -75210878 + Lx9 LINE L1 6859 7131 -513 4 1151 414 0 0 0 chr6 74306159 74306205 -75210832 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1151 959 291 82 99 chr6 74306205 74306486 -75210551 + Lx9 LINE L1 7132 7397 -247 4 1151 5369 116 13 35 chr6 74306486 74307390 -75209647 + RMER17D LTR ERVK 4 887 -2 4 1151 959 291 82 99 chr6 74307390 74307402 -75209635 + Lx9 LINE L1 7398 7398 -246 4 1151 1495 212 70 28 chr6 74307402 74307761 -75209276 - ORR1D1 LTR MaLR 0 374 1 4 1151 959 291 82 99 chr6 74307761 74307866 -75209171 + Lx9 LINE L1 7398 7503 -141 4 1151 29 28 0 0 chr6 74308296 74308332 -75208705 + AT_rich Low_complexity Low_complexity 1 36 0 4 1151 29 0 0 0 chr6 74308402 74308431 -75208606 + AT_rich Low_complexity Low_complexity 1 29 0 4 1151 32 26 0 0 chr6 74308621 74308660 -75208377 + AT_rich Low_complexity Low_complexity 1 39 0 4 1151 377 316 101 22 chr6 74308715 74308893 -75208144 + B3A SINE B2 1 192 -6 4 1151 3877 114 43 92 chr6 74308950 74309740 -75207297 - RMER17A LTR ERVK 0 751 1 4 1151 237 321 95 18 chr6 74309862 74310030 -75207007 + ORR1E LTR MaLR 177 357 -2 4 1151 487 99 0 0 chr6 74310422 74310493 -75206544 - Lx LINE L1 -697 5957 5887 4 1151 3425 130 21 19 chr6 74310493 74311056 -75205981 + Lx LINE L1 6091 6654 0 4 1151 250 236 76 33 chr6 74311056 74311076 -75205961 - L1Md_F2 LINE L1 -696 5886 5869 4 1151 539 305 83 22 chr6 74311611 74311792 -75205245 - B3A SINE B2 -3 195 4 4 1151 917 158 27 11 chr6 74311907 74312093 -75204944 + BGLII LTR ERVK 24 212 -209 4 1151 1623 205 0 3 chr6 74312094 74312402 -75204635 - Lx2B LINE L1 -180 6820 6514 4 1151 21 0 0 0 chr6 74312639 74312660 -75204377 + AT_rich Low_complexity Low_complexity 1 21 0 4 143 35067 55 1 8 chr6 74313409 74319315 -75197722 + L1Md_T LINE L1 1 5589 -297 4 1152 8407 36 0 0 chr6 74319315 74320311 -75196726 + L1Md_T LINE L1 5590 6585 0 4 1152 350 238 240 20 chr6 74320402 74320548 -75196489 + RLTR41 LTR ERV1 273 494 -38 4 1152 1038 122 47 16 chr6 74320746 74320938 -75196099 + L1_Mus3 LINE L1 6441 6638 0 5 1152 355 285 142 22 chr6 74321079 74321262 -75195775 - B3 SINE B2 -8 208 4 5 1152 392 214 17 8 chr6 74321293 74321411 -75195626 - Lx9 LINE L1 -9 7635 7517 5 1152 444 281 78 42 chr6 74322433 74322571 -75194466 + B3 SINE B2 44 188 -28 5 1152 811 244 117 0 chr6 74322571 74322751 -75194286 - B3 SINE B2 -13 203 3 5 1152 444 281 78 42 chr6 74322751 74322779 -75194258 + B3 SINE B2 189 216 0 5 1152 201 300 67 76 chr6 74322849 74322968 -75194069 - L3 LINE CR1 -229 4260 4143 5 1152 22 70 0 0 chr6 74323274 74323317 -75193720 + AT_rich Low_complexity Low_complexity 1 43 0 5 1152 23 33 0 0 chr6 74323432 74323462 -75193575 + AT_rich Low_complexity Low_complexity 1 30 0 5 1152 297 75 0 0 chr6 74323520 74323560 -75193477 + (ATG)n Simple_repeat Simple_repeat 2 41 0 5 1152 448 310 126 21 chr6 74323580 74323771 -75193266 + B3 SINE B2 1 211 -5 5 1152 21 36 0 0 chr6 74323780 74323808 -75193229 + AT_rich Low_complexity Low_complexity 1 28 0 5 1152 21 57 0 0 chr6 74323935 74323970 -75193067 + AT_rich Low_complexity Low_complexity 1 35 0 5 1152 951 165 0 0 chr6 74324117 74324293 -75192744 + GA-rich Low_complexity Low_complexity 3 178 0 5 1152 464 306 75 0 chr6 74324314 74324448 -75192589 + B3A SINE B2 7 150 -48 5 1152 322 297 91 30 chr6 74326137 74326335 -75190702 + MER2 DNA MER2_type 87 296 -49 5 1152 313 240 40 0 chr6 74326339 74326414 -75190623 + MTE2b LTR MaLR 3 80 -299 5 1152 313 123 0 0 chr6 74326425 74326490 -75190547 + Lx LINE L1 6590 6654 0 5 1152 635 142 8 0 chr6 74326809 74326943 -75190094 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 5 1152 38 0 0 0 chr6 74326959 74326997 -75190040 + AT_rich Low_complexity Low_complexity 1 38 0 5 1152 2614 170 9 20 chr6 74327169 74327620 -75189417 + Lx4A LINE L1 6228 6673 -385 5 1152 2457 133 25 15 chr6 74327622 74327972 -75189065 - RLTR9E LTR ERVK 0 409 58 5 1152 1197 43 37 0 chr6 74327972 74328134 -75188903 - L1Md_A LINE L1 0 6582 6415 5 1152 2457 133 25 15 chr6 74328134 74328186 -75188851 - RLTR9E LTR ERVK -352 57 4 5 1152 2277 148 40 3 chr6 74328186 74328559 -75188478 + Lx4A LINE L1 6668 7054 -4 5 1152 1244 72 0 11 chr6 74328611 74328793 -75188244 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1152 373 360 170 23 chr6 74328879 74329309 -75187728 - Lx8 LINE L1 -85 7388 6896 5 1152 446 291 9 0 chr6 74330085 74330195 -75186842 - PB1D9 SINE Alu -1 119 9 5 1152 506 276 8 61 chr6 74330232 74330363 -75186674 + B1_Mur3 SINE Alu 2 125 -24 5 1152 417 20 0 0 chr6 74330373 74330423 -75186614 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1152 216 167 0 0 chr6 74331412 74331448 -75185589 - B3A SINE B2 -160 38 3 5 1152 904 228 46 128 chr6 74332354 74332660 -75184377 + Lx6 LINE L1 7180 7460 0 5 1152 34794 72 2 4 chr6 74333335 74339545 -75177492 - L1Md_F2 LINE L1 0 6585 295 5 1152 276 30 0 0 chr6 74339631 74339664 -75177373 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 5 1152 250 174 29 14 chr6 74339939 74340009 -75177028 - Lx6 LINE L1 -31 7429 7359 5 1152 3311 226 28 38 chr6 74340030 74341022 -75176015 + Lx4B LINE L1 5795 6704 -346 5 1152 6146 76 21 18 chr6 74341027 74341912 -75175125 + L1Md_F2 LINE L1 5717 6582 0 5 1152 1354 123 22 18 chr6 74341912 74342136 -75174901 + L1_Mus3 LINE L1 6381 6605 -33 5 1152 2923 26 3 3 chr6 74342134 74342486 -75174551 + L1Md_F3 LINE L1 5826 6177 -407 5 1152 3373 127 9 4 chr6 74342485 74343015 -75174022 + L1_Mm LINE L1 4166 4698 -1185 5 1152 5650 105 6 0 chr6 74343015 74343815 -75173222 + L1_Mus1 LINE L1 5763 6567 0 5 1152 234 227 0 0 chr6 74343822 74343866 -75173171 + GA-rich Low_complexity Low_complexity 3 46 0 5 1152 758 330 15 0 chr6 74345291 74345494 -75171543 - B3 SINE B2 -5 211 6 5 1152 619 340 15 20 chr6 74346094 74346295 -75170742 + B3 SINE B2 6 205 -11 5 1152 240 35 0 0 chr6 74346574 74346603 -75170434 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1152 192 228 0 0 chr6 74346675 74346732 -75170305 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 5 1152 189 355 81 24 chr6 74347255 74347379 -75169658 - MIR SINE MIR -77 185 55 5 1152 183 333 0 16 chr6 74348107 74348168 -75168869 - MIRc SINE MIR -30 238 179 5 1152 647 266 112 17 chr6 74348533 74348817 -75168220 - MTC LTR MaLR -2 419 1 5 1152 240 192 0 0 chr6 74350520 74350572 -75166465 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1152 195 42 0 0 chr6 74350601 74350625 -75166412 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1152 417 272 39 10 chr6 74350625 74350725 -75166312 - RSINE1 SINE B4 -48 117 14 5 1152 283 300 57 32 chr6 74351363 74351463 -75165574 + RMER4A LTR ERVK 252 355 -111 5 1152 891 0 35 0 chr6 74351463 74351577 -75165460 + (TTCCC)n Simple_repeat Simple_repeat 2 119 0 5 1152 1205 68 11 0 chr6 74351577 74351753 -75165284 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 5 1152 283 300 57 32 chr6 74351753 74351775 -75165262 + RMER4A LTR ERVK 356 377 -89 5 1152 2290 221 54 56 chr6 74351776 74352610 -75164427 + MYSERV16_I-int LTR ERVK 999 1830 -496 5 1152 359 174 17 76 chr6 74352615 74352733 -75164304 + Lx3C LINE L1 6864 6974 -2 5 1152 1446 207 13 3 chr6 74352786 74353087 -75163950 + RLTR15 LTR ERVK 56 359 0 5 1152 261 0 0 0 chr6 74353114 74353143 -75163894 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1152 251 254 0 0 chr6 74353176 74353231 -75163806 + PB1D7 SINE Alu 66 120 0 5 1152 734 280 65 18 chr6 74353742 74353971 -75163066 + Lx5 LINE L1 6808 7047 -3 5 1152 186 43 0 0 chr6 74353976 74353999 -75163038 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1152 264 100 0 0 chr6 74354803 74354843 -75162194 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1152 1254 317 63 3 chr6 74354995 74355375 -75161662 - MTD LTR MaLR -14 405 3 5 1152 519 286 40 25 chr6 74355936 74356137 -75160900 + Lx7 LINE L1 7143 7346 -350 5 1152 359 262 111 37 chr6 74356203 74356393 -75160644 + Lx7 LINE L1 7493 7696 0 5 1152 3066 74 60 13 chr6 74358701 74359155 -75157882 + MT2C_Mm LTR ERVL 1 475 0 5 1152 240 200 0 0 chr6 74359408 74359463 -75157574 + T-rich Low_complexity Low_complexity 3 57 0 5 1152 258 56 0 0 chr6 74359651 74359687 -75157350 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1152 998 82 0 114 chr6 74360003 74360169 -75156868 + B1_Mus2 SINE Alu 1 147 0 5 1152 300 172 0 0 chr6 74360170 74360228 -75156809 + GA-rich Low_complexity Low_complexity 2 59 0 5 1152 346 314 53 34 chr6 74360228 74360436 -75156601 + L1M5 LINE L1 3073 3284 -2862 5 1152 245 309 110 31 chr6 74360525 74360652 -75156385 - MIR SINE MIR -10 252 116 5 1152 3608 184 16 38 chr6 74360877 74361565 -75155472 - RLTR33 LTR ERVK 0 678 6 5 1152 29 28 0 0 chr6 74361733 74361769 -75155268 + AT_rich Low_complexity Low_complexity 1 36 0 5 1152 2249 257 87 6 chr6 74361868 74362203 -75154834 - RMER6D LTR ERVK -12 708 367 5 1152 477 47 0 0 chr6 74362203 74362267 -75154770 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1152 2249 257 87 6 chr6 74362267 74362586 -75154451 - RMER6D LTR ERVK -354 366 2 5 1152 221 130 56 42 chr6 74362727 74362799 -75154238 + A-rich Low_complexity Low_complexity 5 77 0 5 1152 379 306 33 8 chr6 74362885 74363007 -75154030 + Lx7 LINE L1 6889 7013 -683 5 1152 237 108 0 0 chr6 74363187 74363224 -75153813 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1152 279 276 91 38 chr6 74363571 74363703 -75153334 - MER96B DNA hAT -237 180 42 5 1152 2502 31 0 0 chr6 74364041 74364331 -75152706 - L1Md_T LINE L1 -195 6387 6098 5 1152 1587 37 0 105 chr6 74364331 74364570 -75152467 + L1Md_A LINE L1 6368 6581 -1 5 1152 23 78 0 0 chr6 74364587 74364638 -75152399 + AT_rich Low_complexity Low_complexity 1 51 0 5 1152 3113 304 44 19 chr6 74364757 74365884 -75151153 - Lx9 LINE L1 -162 7482 6327 5 1152 423 277 115 28 chr6 74365928 74365956 -75151081 - B3A SINE B2 0 198 169 5 1152 453 62 0 0 chr6 74365956 74366021 -75151016 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 5 1152 423 277 115 28 chr6 74366021 74366174 -75150863 - B3A SINE B2 -30 168 1 5 1152 390 74 0 0 chr6 74366248 74366302 -75150735 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1152 249 33 0 0 chr6 74366524 74366554 -75150483 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1152 402 39 0 0 chr6 74367392 74367444 -75149593 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1152 1285 308 63 38 chr6 74367504 74368223 -75148814 + Lx9 LINE L1 6902 7638 -6 5 1152 22 70 0 0 chr6 74368509 74368552 -75148485 + AT_rich Low_complexity Low_complexity 1 43 0 5 1152 5084 210 118 35 chr6 74368615 74368681 -75148356 - Lx4B LINE L1 0 7058 6969 5 1152 1068 8 0 0 chr6 74368681 74368802 -75148235 + (TTCTC)n Simple_repeat Simple_repeat 1 121 0 5 1152 10881 205 105 33 chr6 74368802 74369986 -75147051 - Lx4B LINE L1 -90 6968 5682 5 1152 863 175 17 0 chr6 74369986 74370163 -75146874 + Lx2A1 LINE L1 6822 7001 -7 5 1152 10881 177 37 26 chr6 74370163 74372323 -75144714 - Lx4B LINE L1 -196 5681 3493 5 1152 2195 197 45 4 chr6 74372336 74373109 -75143928 - Lx4B LINE L1 -4162 1715 896 5 1152 22 0 0 0 chr6 74373846 74373868 -75143169 + AT_rich Low_complexity Low_complexity 1 22 0 5 1152 932 170 37 5 chr6 74374528 74374594 -75142443 - Lx LINE L1 -4 6650 6585 5 1152 954 90 0 0 chr6 74374594 74374728 -75142309 + (CCTAT)n Simple_repeat Simple_repeat 5 138 0 5 1152 932 170 37 5 chr6 74374728 74374850 -75142187 - Lx LINE L1 -70 6584 6457 5 1152 737 123 9 9 chr6 74374850 74374958 -75142079 + Lx2 LINE L1 6252 6360 -637 5 1152 216 0 0 0 chr6 74374969 74374993 -75142044 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 5 1152 1488 138 0 18 chr6 74375046 74375275 -75141762 + Lx2 LINE L1 6354 6578 -419 5 1152 14412 111 10 2 chr6 74375575 74377551 -75139486 - L1_Mus3 LINE L1 -12 6626 4628 5 1152 213 39 0 0 chr6 74377551 74377577 -75139460 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1152 14412 120 10 4 chr6 74377577 74378547 -75138490 - L1_Mus3 LINE L1 -1256 4627 3656 5 1152 6191 117 1 16 chr6 74378523 74379767 -75137270 - L1VL1 LINE L1 -2283 1415 193 5 1152 468 35 0 0 chr6 74379923 74379981 -75137056 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1152 26 50 0 0 chr6 74380115 74380155 -75136882 + AT_rich Low_complexity Low_complexity 1 40 0 5 1152 28458 61 97 14 chr6 74380344 74381995 -75135042 - L1Md_F2 LINE L1 -5 6577 4757 6 1152 228 183 46 77 chr6 74381995 74382060 -75134977 + RMER20A LTR ERVK 186 248 -268 6 1152 28458 61 97 14 chr6 74382060 74385279 -75131758 - L1Md_F2 LINE L1 -5 4756 1203 6 1152 4678 122 3 24 chr6 74385245 74385995 -75131042 - L1Md_F LINE L1 -5380 1139 406 6 1152 1037 298 42 18 chr6 74386698 74386894 -75130143 - MTE2b LTR MaLR -10 369 175 6 1152 330 67 0 0 chr6 74386894 74386939 -75130098 + (TTA)n Simple_repeat Simple_repeat 3 47 0 6 1152 1037 298 42 18 chr6 74386939 74387074 -75129963 - MTE2b LTR MaLR -205 174 31 6 1152 231 252 69 29 chr6 74387166 74387268 -75129769 + L1M4 LINE L1 2630 2735 -3411 6 1152 390 308 116 54 chr6 74387487 74387694 -75129343 + L1M2 LINE L1 2781 3005 -3138 6 1152 489 28 0 65 chr6 74387694 74387771 -75129266 + L1Md_T LINE L1 6509 6580 -2 6 1152 390 308 116 54 chr6 74387771 74387917 -75129120 + L1M2 LINE L1 3006 3156 -2987 6 1152 587 318 6 37 chr6 74388131 74388294 -75128743 - RSINE1 SINE B4 0 165 8 6 1152 186 71 0 0 chr6 74388359 74388387 -75128650 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1152 453 240 106 0 chr6 74388429 74388533 -75128504 - B3 SINE B2 -100 116 2 6 1152 561 125 0 0 chr6 74388659 74388747 -75128290 + (TA)n Simple_repeat Simple_repeat 1 88 0 6 1152 308 307 42 8 chr6 74388759 74388940 -75128097 - Tigger7 DNA MER2_type -126 213 22 6 1152 6797 129 17 4 chr6 74391050 74392302 -75124735 + Lx LINE L1 5383 6654 0 6 1152 315 0 0 0 chr6 74392702 74392737 -75124300 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1152 597 263 50 0 chr6 74393330 74393509 -75123528 + B3A SINE B2 1 188 -10 6 1152 277 370 79 64 chr6 74393596 74393798 -75123239 + MER34A1 LTR ERV1 157 361 -226 6 1152 380 322 12 49 chr6 74393803 74393966 -75123071 - ORR1E LTR MaLR -13 366 210 6 1152 754 308 98 15 chr6 74393958 74394197 -75122840 - ORR1E LTR MaLR -123 247 1 6 1152 21 36 0 0 chr6 74394314 74394342 -75122695 + AT_rich Low_complexity Low_complexity 1 28 0 6 1152 28 29 0 0 chr6 74394363 74394398 -75122639 + AT_rich Low_complexity Low_complexity 1 35 0 6 1152 282 221 95 0 chr6 74394854 74394949 -75122088 - Lx9 LINE L1 -7 7637 7534 6 1152 1041 250 201 0 chr6 74394952 74395226 -75121811 + Lx9 LINE L1 6680 7008 -636 6 1152 321 234 13 0 chr6 74395451 74395528 -75121509 + Lx9 LINE L1 6845 6922 -722 6 1152 284 198 46 69 chr6 74395528 74395615 -75121422 - RMER15 LTR ERVL -490 85 1 6 1152 1759 271 9 129 chr6 74396338 74397012 -75120025 + RMER19C LTR ERVK 6 598 -13 6 1152 32662 29 0 0 chr6 74397043 74401790 -75115247 - L1Md_T LINE L1 0 6582 1928 6 1152 955 0 0 9 chr6 74401790 74401898 -75115139 - U6 snRNA snRNA 0 107 1 6 1152 32662 35 0 0 chr6 74401898 74401910 -75115127 - L1Md_T LINE L1 -3956 1927 1916 6 1152 525 257 77 88 chr6 74402690 74402991 -75114046 - MER67C LTR ERV1 -152 362 90 6 1152 215 288 17 0 chr6 74404102 74404161 -75112876 + GA-rich Low_complexity Low_complexity 2 61 0 6 1152 6010 151 5 27 chr6 74404655 74405692 -75111345 - Lx2 LINE L1 -4 6993 5980 6 1152 4461 99 20 0 chr6 74406694 74407333 -75109704 + L1_Mus2 LINE L1 5914 6565 -1 6 1152 1175 57 6 0 chr6 74407422 74407580 -75109457 - L1Md_T LINE L1 -1 6581 6423 6 1152 4697 149 44 20 chr6 74409400 74410234 -75106803 + Lx2 LINE L1 6144 6997 0 6 1152 8079 24 0 8 chr6 74410244 74411181 -75105856 + RLTR13B3 LTR ERVK 1 929 0 6 1152 586 291 29 5 chr6 74411213 74411420 -75105617 + L1MD LINE L1 5403 5614 -628 6 1152 300 186 0 0 chr6 74411427 74411486 -75105551 + A-rich Low_complexity Low_complexity 1 59 0 6 1152 22 0 0 0 chr6 74411938 74411960 -75105077 + AT_rich Low_complexity Low_complexity 1 22 0 6 1152 244 269 44 15 chr6 74413249 74413317 -75103720 + MLT1A LTR MaLR 237 306 -68 6 1152 483 145 0 0 chr6 74413318 74413401 -75103636 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 6 1152 1006 297 64 83 chr6 74413578 74413949 -75103088 + MTEb LTR MaLR 6 359 0 6 1152 230 321 24 0 chr6 74413967 74414051 -75102986 - Tigger5 DNA MER2_type 0 2406 2321 6 1152 585 0 0 0 chr6 74414149 74414214 -75102823 + (TC)n Simple_repeat Simple_repeat 1 65 0 6 1152 2064 189 89 43 chr6 74414644 74415137 -75101900 - RMER20A LTR ERVK 0 516 1 6 1152 719 156 6 0 chr6 74415208 74415368 -75101669 + CT-rich Low_complexity Low_complexity 1 161 0 6 1152 250 309 62 0 chr6 74415487 74415568 -75101469 + ORR1D2 LTR MaLR 276 361 -9 6 1152 341 342 26 82 chr6 74416068 74416374 -75100663 + B4A SINE B4 3 291 -1 6 1152 25 0 0 0 chr6 74416546 74416571 -75100466 + AT_rich Low_complexity Low_complexity 1 25 0 6 1152 1036 249 47 51 chr6 74416589 74416885 -75100152 - Lx5 LINE L1 -7 7043 6749 6 1152 22 70 0 0 chr6 74418055 74418098 -75098939 + AT_rich Low_complexity Low_complexity 1 43 0 6 1152 217 0 29 29 chr6 74418196 74418230 -75098807 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1152 961 364 70 5 chr6 74418284 74418728 -75098309 - Lx8 LINE L1 -195 7278 6806 6 1152 335 78 0 19 chr6 74420025 74420077 -75096960 + (TTA)n Simple_repeat Simple_repeat 1 51 0 6 1152 299 364 8 47 chr6 74420099 74420226 -75096811 - RSINE1 SINE B4 -1 164 43 6 1152 25 0 0 0 chr6 74420912 74420937 -75096100 + AT_rich Low_complexity Low_complexity 1 25 0 6 1152 5523 100 2 17 chr6 74421014 74421818 -75095219 + L1Md_F2 LINE L1 5791 6582 0 6 1152 1467 220 30 14 chr6 74422533 74422759 -75094278 - ORR1D1 LTR MaLR 0 374 142 6 1152 213 39 0 0 chr6 74422759 74422785 -75094252 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1152 1467 220 30 14 chr6 74422785 74422926 -75094111 - ORR1D1 LTR MaLR -233 141 1 6 1152 7026 99 30 0 chr6 74423290 74424342 -75092695 - L1_Mus3 LINE L1 -8 6630 5550 6 1152 1596 142 6 86 chr6 74424336 74424660 -75092377 + L1_Mus3 LINE L1 5272 5569 -314 6 1152 709 326 54 41 chr6 74424660 74424974 -75092063 - MTE2b LTR MaLR -4 375 58 6 1152 280 309 0 12 chr6 74424988 74425070 -75091967 - MTE2b LTR MaLR -295 84 4 6 1152 294 29 0 0 chr6 74425965 74426000 -75091037 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1152 762 11 0 0 chr6 74426714 74426801 -75090236 + (TTTC)n Simple_repeat Simple_repeat 4 90 0 6 1152 1000 177 6 14 chr6 74426801 74427148 -75089889 + CT-rich Low_complexity Low_complexity 1 343 0 6 1152 1284 89 0 0 chr6 74427151 74427331 -75089706 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1152 342 0 0 0 chr6 74427625 74427663 -75089374 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1152 2114 212 7 10 chr6 74427878 74428282 -75088755 - MTC LTR MaLR -18 403 1 6 1152 225 159 0 0 chr6 74428394 74428438 -75088599 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1152 435 194 0 0 chr6 74428695 74428798 -75088239 + (TG)n Simple_repeat Simple_repeat 2 104 0 6 1152 315 332 32 23 chr6 74429157 74429376 -75087661 + Lx8 LINE L1 7252 7472 -1 6 1152 21 0 0 0 chr6 74429786 74429807 -75087230 + AT_rich Low_complexity Low_complexity 1 21 0 6 1152 250 207 146 2 chr6 74430150 74430232 -75086805 + MER34 LTR ERV1 1 91 -496 6 1152 279 262 68 81 chr6 74430394 74430611 -75086426 + MER34 LTR ERV1 303 495 -47 6 1152 22 0 0 0 chr6 74430699 74430721 -75086316 + AT_rich Low_complexity Low_complexity 1 22 0 6 1152 509 284 43 0 chr6 74431335 74431476 -75085561 - B1_Mur3 SINE Alu -2 147 1 6 1152 198 250 78 0 chr6 74432469 74432533 -75084504 + MIR SINE MIR 59 127 -81 6 1152 414 0 0 0 chr6 74432816 74432862 -75084175 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1152 810 146 31 4 chr6 74433237 74433464 -75083573 + GA-rich Low_complexity Low_complexity 1 232 0 6 1152 3690 196 45 30 chr6 74433464 74434261 -75082776 + L1_Mur2 LINE L1 2861 3655 -2222 6 1152 889 140 7 7 chr6 74434261 74434405 -75082632 + B1_Mus1 SINE Alu 5 148 0 6 1152 3690 196 45 30 chr6 74434405 74434541 -75082496 + L1_Mur2 LINE L1 3656 3808 -2069 6 1152 284 297 112 81 chr6 74435156 74435317 -75081720 + B4 SINE B4 127 292 0 6 1152 216 295 49 37 chr6 74435802 74435883 -75081154 - B3A SINE B2 -115 83 2 6 1152 49 52 0 0 chr6 74436935 74437012 -75080025 + AT_rich Low_complexity Low_complexity 1 77 0 6 1152 372 283 41 16 chr6 74437310 74437504 -75079533 - Lx9 LINE L1 -120 7524 7326 6 1152 449 243 12 92 chr6 74437637 74437800 -75079237 + Lx9 LINE L1 6980 7129 -515 6 1152 1977 189 81 65 chr6 74437807 74438312 -75078725 + RLTR20B3 LTR ERVK 5 517 -60 6 1152 24 0 0 0 chr6 74438330 74438354 -75078683 + AT_rich Low_complexity Low_complexity 1 24 0 6 1152 1137 82 0 0 chr6 74438525 74438671 -75078366 + B1_Mus2 SINE Alu 2 147 0 6 1152 23 0 0 0 chr6 74438789 74438812 -75078225 + AT_rich Low_complexity Low_complexity 1 23 0 6 1152 2817 50 6 3 chr6 74439479 74439841 -75077196 - L1Md_F2 LINE L1 -11 6571 6209 6 1152 5499 79 5 17 chr6 74440324 74441075 -75075962 - L1Md_F2 LINE L1 -13 6569 5828 6 1152 212 282 0 37 chr6 74441730 74441811 -75075226 + CT-rich Low_complexity Low_complexity 3 80 0 6 1152 25 0 0 0 chr6 74442030 74442055 -75074982 + AT_rich Low_complexity Low_complexity 1 25 0 6 1152 459 35 0 0 chr6 74442344 74442401 -75074636 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1152 732 211 35 7 chr6 74442740 74442883 -75074154 - B1_Mus1 SINE Alu 0 148 2 6 1152 268 350 7 42 chr6 74442897 74443040 -75073997 + Tigger5 DNA MER2_type 98 235 -2171 6 1152 250 326 23 0 chr6 74443766 74443852 -75073185 + MLT2B3 LTR ERVL 10 97 -457 6 1152 504 0 0 0 chr6 74444193 74444249 -75072788 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1152 661 350 23 0 chr6 74444315 74444529 -75072508 + MTE2a LTR MaLR 90 308 -71 6 1152 30 0 0 0 chr6 74444595 74444625 -75072412 + AT_rich Low_complexity Low_complexity 1 30 0 6 1152 24 32 0 0 chr6 74444977 74445008 -75072029 + AT_rich Low_complexity Low_complexity 1 31 0 6 1152 3277 119 70 19 chr6 74445321 74445862 -75071175 + Lx2 LINE L1 6428 6996 -1 6 1152 258 32 0 0 chr6 74447308 74447339 -75069698 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 1152 516 260 159 17 chr6 74447659 74447835 -75069202 - ID_B1 SINE B4 -21 203 3 7 1152 222 333 0 0 chr6 74448092 74448155 -75068882 + CT-rich Low_complexity Low_complexity 3 65 0 7 1152 1001 102 17 17 chr6 74448156 74448336 -75068701 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1152 468 48 0 0 chr6 74448569 74448632 -75068405 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 7 1153 1954 220 154 44 chr6 74449575 74450274 -75066763 - L1_Rod LINE L1 -71 5776 5001 7 1153 378 292 46 97 chr6 74450314 74450663 -75066374 - L1_Rod LINE L1 -1128 4719 4389 7 1153 2744 219 71 16 chr6 74450665 74451395 -75065642 + L1_Mur2 LINE L1 2230 2999 -2878 7 1153 1714 16 0 0 chr6 74451398 74451591 -75065446 + B2_Mm1a SINE B2 1 193 0 7 1153 734 182 58 0 chr6 74451608 74451745 -75065292 + L1VL2 LINE L1 309 453 -5882 7 1153 3111 97 2 0 chr6 74451742 74452196 -75064841 + MusHAL1 LINE L1 1000 1454 -1258 7 1153 279 0 0 0 chr6 74452278 74452309 -75064728 + (TA)n Simple_repeat Simple_repeat 2 32 0 7 1153 474 18 0 0 chr6 74452448 74452503 -75064534 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1153 546 319 0 7 chr6 74452544 74452680 -75064357 - B3A SINE B2 -62 136 2 7 1153 25 31 0 0 chr6 74452745 74452777 -75064260 + AT_rich Low_complexity Low_complexity 1 32 0 7 1153 368 351 54 41 chr6 74453070 74453364 -75063673 + Lx8 LINE L1 7116 7413 -60 7 1153 414 85 0 0 chr6 74453364 74453423 -75063614 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1153 7035 123 4 24 chr6 74453597 74454823 -75062214 + Lx LINE L1 5454 6654 0 7 1153 581 258 44 22 chr6 74454837 74454972 -75062065 + ETnERV2-int LTR ERVK 7065 7202 -204 7 1153 312 191 0 0 chr6 74455362 74455425 -75061612 + L1_Mur2 LINE L1 3227 3289 -2591 7 1153 638 272 15 15 chr6 74455417 74455622 -75061415 - L1_Rod LINE L1 -1846 4001 3797 7 1153 437 276 82 79 chr6 74455637 74455991 -75061046 - L1_Rod LINE L1 -2197 3650 3296 7 1153 822 299 35 56 chr6 74456003 74456347 -75060690 - MTE2a LTR MaLR -52 327 1 7 1153 24 0 0 0 chr6 74456473 74456497 -75060540 + AT_rich Low_complexity Low_complexity 1 24 0 7 1153 1668 76 76 0 chr6 74456497 74456735 -75060302 - L1_Mus1 LINE L1 0 6567 6312 7 1153 3375 222 40 17 chr6 74456746 74457650 -75059387 - Lx4B LINE L1 -4 7054 6008 7 1153 704 148 35 6 chr6 74457696 74457866 -75059171 + CT-rich Low_complexity Low_complexity 5 179 0 7 1153 1723 270 111 15 chr6 74457885 74458671 -75058366 - L1_Rod LINE L1 -2612 3235 2375 7 1153 234 128 0 0 chr6 74458671 74458710 -75058327 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 1153 2855 80 5 5 chr6 74458752 74459142 -75057895 - L1_Mus2 LINE L1 0 6566 6177 7 1153 2501 82 0 15 chr6 74459142 74459478 -75057559 + L1_Mm LINE L1 5403 5733 -150 7 1153 2338 245 25 10 chr6 74459476 74460153 -75056884 - L1_Rod LINE L1 -3426 2421 1735 7 1153 314 0 0 0 chr6 74460153 74460189 -75056848 - MT2_Mm LTR ERVL -4 489 454 7 1153 1389 93 21 0 chr6 74460195 74460388 -75056649 - MT2C_Mm LTR ERVL -278 197 1 7 1153 269 267 38 38 chr6 74460296 74460401 -75056636 - ORR1A3-int LTR MaLR -1258 705 601 7 1153 1006 189 18 5 chr6 74460403 74460626 -75056411 - L1_Rod LINE L1 -4144 1703 1478 7 1153 268 215 17 78 chr6 74460725 74460841 -75056196 - L1_Rod LINE L1 -4386 1461 1353 7 1153 331 371 101 0 chr6 74460995 74461154 -75055883 + B3 SINE B2 2 176 -40 7 1153 180 125 0 0 chr6 74461158 74461190 -75055847 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1153 638 41 41 0 chr6 74461541 74461639 -75055398 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 7 1153 23 33 0 0 chr6 74462318 74462348 -75054689 + AT_rich Low_complexity Low_complexity 1 30 0 7 1153 687 156 149 10 chr6 74462908 74463109 -75053928 - Lx9 LINE L1 -12 7632 7404 7 1153 619 237 82 71 chr6 74463112 74463294 -75053743 - B3 SINE B2 -11 184 1 7 1153 1606 238 6 3 chr6 74463314 74463664 -75053373 - Lx9 LINE L1 -247 7397 7047 7 1153 2815 154 71 8 chr6 74463758 74464249 -75052788 - Lx2B LINE L1 -6 6994 6473 7 1153 5371 78 7 20 chr6 74464579 74465336 -75051701 - L1Md_F2 LINE L1 -2 6580 5834 7 1153 715 12 0 0 chr6 74465336 74465419 -75051618 + L1Md_F2 LINE L1 5742 5824 -758 7 1153 733 79 114 0 chr6 74465495 74465609 -75051428 + Lx3C LINE L1 6184 6310 -666 7 1153 32932 76 10 13 chr6 74465602 74470814 -75046223 + L1Md_F3 LINE L1 402 5588 -298 7 1153 7913 42 12 0 chr6 74470815 74471787 -75045250 + L1Md_F3 LINE L1 5590 6573 -14 7 1153 296 157 0 0 chr6 74471802 74471853 -75045184 + Lx3C LINE L1 6295 6345 -631 7 1153 4016 135 44 14 chr6 74471853 74472551 -75044486 + Lx3C LINE L1 6256 6974 -2 7 1153 236 319 158 77 chr6 74473335 74473518 -75043519 + B4A SINE B4 39 236 -56 7 1153 315 0 0 0 chr6 74474020 74474055 -75042982 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1153 752 265 57 41 chr6 74474103 74474435 -75042602 - RMER15 LTR ERVL -243 332 61 7 1153 279 0 0 0 chr6 74474553 74474584 -75042453 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1153 1087 133 22 0 chr6 74474594 74474775 -75042262 + B2_Mm1t SINE B2 1 185 -8 7 1153 243 0 0 0 chr6 74475487 74475514 -75041523 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1153 36 23 0 0 chr6 74475814 74475857 -75041180 + AT_rich Low_complexity Low_complexity 1 43 0 7 1153 30261 93 4 2 chr6 74475946 74481150 -75035887 + L1Md_F2 LINE L1 371 5586 -297 7 1153 7561 67 6 5 chr6 74481151 74482145 -75034892 + L1Md_F2 LINE L1 5588 6582 0 7 1153 216 97 0 0 chr6 74482158 74482189 -75034848 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 7 1153 4157 172 33 2 chr6 74482294 74483243 -75033794 - Lx2B LINE L1 -1028 5972 5002 7 1153 4491 154 57 3 chr6 74483243 74484019 -75033018 + Lx2B LINE L1 6183 7000 0 7 1153 4103 195 7 8 chr6 74484037 74485081 -75031956 + Lx4B LINE L1 5343 6390 -668 7 1153 315 358 8 8 chr6 74485087 74485211 -75031826 + B4A SINE B4 167 290 -2 7 1153 21 36 0 0 chr6 74486438 74486466 -75030571 + AT_rich Low_complexity Low_complexity 1 28 0 7 1153 513 32 0 0 chr6 74486597 74486660 -75030377 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1153 5029 84 11 27 chr6 74486994 74487727 -75029310 - L1_Mus3 LINE L1 -7 6631 5911 7 1153 494 306 71 0 chr6 74488000 74488196 -75028841 + B3 SINE B2 2 211 -5 7 1153 336 373 18 24 chr6 74488703 74488868 -75028169 - RSINE1 SINE B4 0 165 2 7 1153 800 150 12 12 chr6 74488943 74489105 -75027932 - Lx LINE L1 -15 6639 6478 7 1153 5746 159 102 26 chr6 74489105 74490245 -75026792 - Lx LINE L1 -502 6152 4678 7 1153 1116 66 0 0 chr6 74490245 74490382 -75026655 - B1_Mus2 SINE Alu -10 137 1 7 1153 5746 154 20 40 chr6 74490382 74491067 -75025970 - Lx LINE L1 -1200 4677 3990 7 1153 358 139 69 11 chr6 74491310 74491397 -75025640 - Lx LINE L1 -8 6646 6555 7 1153 2269 233 37 16 chr6 74492734 74493296 -75023741 - Lx2B LINE L1 -11 6989 6416 7 1153 1425 201 112 39 chr6 74493292 74493722 -75023315 - L1_Mur2 LINE L1 -669 5208 4724 7 1153 234 245 63 11 chr6 74493710 74493785 -75023252 - L1_Mur1 LINE L1 -1072 4814 4735 7 1153 243 0 0 0 chr6 74493785 74493812 -75023225 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1153 234 245 63 11 chr6 74493812 74493831 -75023206 - L1_Mur1 LINE L1 -1152 4734 4716 7 1153 282 352 52 64 chr6 74493832 74494005 -75023032 + MTD LTR MaLR 33 203 -216 7 1153 285 29 0 0 chr6 74494709 74494743 -75022294 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1153 1426 236 66 41 chr6 74496197 74496682 -75020355 + Lx7 LINE L1 7200 7696 0 7 1153 1197 231 50 71 chr6 74496752 74497074 -75019963 - RMER6A LTR ERVK -7 713 414 7 1153 2939 70 23 3 chr6 74497074 74497462 -75019575 - MTA_Mm LTR MaLR 0 396 1 7 1153 1197 224 38 81 chr6 74497462 74497622 -75019415 - RMER6A LTR ERVK -213 543 386 7 1153 318 36 54 0 chr6 74497622 74497678 -75019359 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 7 1153 1197 224 38 81 chr6 74497678 74497718 -75019319 - RMER6A LTR ERVK -371 385 345 7 1153 879 240 22 18 chr6 74498244 74498473 -75018564 - RMER6A LTR ERVK -358 362 133 7 1153 26 30 0 0 chr6 74498514 74498547 -75018490 + AT_rich Low_complexity Low_complexity 1 33 0 7 1153 1022 150 0 0 chr6 74498547 74498707 -75018330 - RMER6A LTR ERVK -560 160 1 7 1153 307 295 168 40 chr6 74499420 74499593 -75017444 - B4A SINE B4 -16 276 82 7 1153 529 317 45 0 chr6 74499618 74499817 -75017220 - B3 SINE B2 -8 208 1 7 1153 1178 65 0 0 chr6 74499845 74500000 -75017037 - ORR1A1 LTR MaLR 0 346 192 7 1153 1403 78 0 0 chr6 74500000 74500191 -75016846 - ORR1A1 LTR MaLR -155 191 1 1 1153 628 107 18 0 chr6 74501272 74501384 -75015653 + (TAGA)n Simple_repeat Simple_repeat 2 115 0 2 1153 445 317 58 0 chr6 74501384 74501504 -75015533 - B1F SINE Alu -5 144 18 3 1153 468 311 44 18 chr6 74501544 74501816 -75015221 - L1MA9 LINE L1 -174 6138 5860 4 1153 882 246 118 8 chr6 74501927 74502165 -75014872 - MTD LTR MaLR -153 266 3 5 1153 242 108 0 0 chr6 74502229 74502266 -75014771 - L1MA9 LINE L1 -473 5818 5782 4 1153 5673 158 8 3 chr6 74502417 74503339 -75013698 - Lx3B LINE L1 -443 6530 5605 6 1153 629 172 66 15 chr6 74503339 74503475 -75013562 - RLTR17 LTR ERVK -549 143 1 7 1153 705 186 0 0 chr6 74503567 74503691 -75013346 - Lx3B LINE L1 -286 5600 5477 6 1153 225 296 132 60 chr6 74503771 74503922 -75013115 + RLTR11A LTR ERVK 92 253 -275 8 1153 371 289 63 45 chr6 74504112 74504246 -75012791 - L1M2 LINE L1 -767 5545 5405 9 1153 2743 187 99 25 chr6 74504246 74504889 -75012148 - RLTR17 LTR ERVK -1 691 1 1 1153 371 289 63 45 chr6 74504889 74505040 -75011997 - L1M2 LINE L1 -908 5404 5255 9 1153 396 333 122 65 chr6 74505201 74505522 -75011515 - L1M4 LINE L1 -996 5150 4818 1 1153 778 50 57 0 chr6 74505522 74505663 -75011374 + (TCTA)n Simple_repeat Simple_repeat 1 149 0 1 1153 396 333 122 65 chr6 74505663 74505753 -75011284 - L1M4 LINE L1 -1329 4817 4697 1 1153 204 40 0 0 chr6 74505753 74505778 -75011259 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1153 396 0 0 0 chr6 74505778 74505822 -75011215 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1153 396 333 122 65 chr6 74505822 74506054 -75010983 - L1M4 LINE L1 -1450 4696 4470 1 1153 480 354 22 0 chr6 74506057 74506238 -75010799 + B3A SINE B2 2 186 -12 1 1153 1921 276 106 85 chr6 74506682 74507481 -75009556 + RMER13A LTR ERVK 1 816 -44 1 1153 224 217 0 69 chr6 74507893 74508081 -75008956 + GA-rich Low_complexity Low_complexity 4 178 0 1 1153 571 352 107 37 chr6 74508107 74508405 -75008632 + Lx8 LINE L1 6982 7300 -173 1 1153 1030 242 80 3 chr6 74508559 74508870 -75008167 - Lx9 LINE L1 -1 7643 7309 1 1153 492 161 0 0 chr6 74508869 74508956 -75008081 - Lx9 LINE L1 -923 6721 6635 1 1153 228 319 11 0 chr6 74510441 74510532 -75006505 + GA-rich Low_complexity Low_complexity 3 94 0 2 1153 385 286 37 55 chr6 74510678 74510841 -75006196 - MTEa LTR MaLR -159 220 61 2 1153 490 333 12 55 chr6 74511024 74511189 -75005848 + B4A SINE B4 133 290 -2 2 1153 585 318 25 20 chr6 74511851 74512047 -75004990 - B3 SINE B2 -11 205 9 2 1153 354 82 20 0 chr6 74512416 74512465 -75004572 - PB1D9 SINE Alu -51 69 20 2 1153 517 117 151 10 chr6 74512428 74512541 -75004496 + B1_Mm SINE Alu 21 147 -2 2 1153 660 48 165 0 chr6 74512737 74512840 -75004197 + L1Md_F2 LINE L1 6451 6570 -12 2 1153 611 317 9 28 chr6 74513512 74513726 -75003311 + MTEa LTR MaLR 169 378 -1 2 1153 21 0 0 0 chr6 74514340 74514361 -75002676 + AT_rich Low_complexity Low_complexity 1 21 0 2 1153 296 172 11 0 chr6 74514782 74514869 -75002168 + GA-rich Low_complexity Low_complexity 2 89 0 2 1153 500 309 79 35 chr6 74515262 74515490 -75001547 - ORR1E LTR MaLR -2 357 120 3 1153 369 0 0 0 chr6 74515712 74515753 -75001284 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1153 270 299 14 36 chr6 74515768 74515907 -75001130 - Lx8 LINE L1 -1579 5894 5759 3 1153 479 251 110 0 chr6 74515910 74516073 -75000964 - L1M1 LINE L1 -557 5746 5566 3 1153 656 159 7 19 chr6 74517243 74517397 -74999640 + Lx3B LINE L1 6818 6969 -4 3 1153 450 0 0 0 chr6 74518144 74518194 -74998843 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1153 234 234 26 13 chr6 74518201 74518279 -74998758 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 3 1153 436 32 32 0 chr6 74518771 74518833 -74998204 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1153 304 312 89 42 chr6 74518835 74519106 -74997931 + L1MC2 LINE L1 5930 6211 -133 3 1153 838 316 72 16 chr6 74519174 74519495 -74997542 - MER2 DNA MER2_type -6 339 1 3 1153 216 105 79 0 chr6 74520293 74520331 -74996706 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 4 1153 195 42 0 0 chr6 74521215 74521239 -74995798 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1153 385 298 70 55 chr6 74521247 74521375 -74995662 + ID_B1 SINE B4 85 214 -10 4 1153 320 249 138 0 chr6 74522797 74522925 -74994112 + MER67D LTR ERV1 42 184 -527 4 1153 404 277 17 0 chr6 74522993 74523112 -74993925 + (TG)n Simple_repeat Simple_repeat 1 121 0 4 1153 296 302 160 0 chr6 74523161 74523267 -74993770 + MER67D LTR ERV1 175 297 -414 4 1153 968 214 78 57 chr6 74523367 74523699 -74993338 - Lx7 LINE L1 0 7696 7358 4 1153 681 357 75 33 chr6 74524908 74525270 -74991767 + MTEa LTR MaLR 3 379 0 4 1153 25 31 0 0 chr6 74525307 74525339 -74991698 + AT_rich Low_complexity Low_complexity 1 32 0 4 1153 222 304 112 12 chr6 74525529 74525609 -74991428 + MER5A DNA MER1_type 29 116 -73 4 1153 333 0 0 0 chr6 74525616 74525653 -74991384 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1153 360 0 0 0 chr6 74525653 74525692 -74991345 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1153 3187 174 14 32 chr6 74525908 74526502 -74990535 - Lx2 LINE L1 -6 6991 6409 5 1153 23 54 0 0 chr6 74526539 74526576 -74990461 + AT_rich Low_complexity Low_complexity 1 37 0 5 1153 552 15 0 0 chr6 74526580 74526645 -74990392 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1153 309 325 34 34 chr6 74527703 74527878 -74989159 + RLTR42-int LTR ERVK 1228 1402 -4120 5 1153 199 29 0 79 chr6 74528778 74528816 -74988221 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 5 1153 1179 109 0 30 chr6 74528911 74529109 -74987928 + L1Md_F2 LINE L1 6379 6570 -12 5 1153 21 71 0 0 chr6 74529218 74529260 -74987777 + AT_rich Low_complexity Low_complexity 1 42 0 5 1153 1602 186 29 73 chr6 74529443 74529785 -74987252 - ORR1C1 LTR MaLR -51 327 1 5 1153 340 288 0 59 chr6 74529785 74529862 -74987175 - B4A SINE B4 -200 92 21 5 1153 195 42 0 0 chr6 74530031 74530055 -74986982 + (TTA)n Simple_repeat Simple_repeat 3 26 0 6 1153 4173 184 68 1 chr6 74530060 74530838 -74986199 - Lx4A LINE L1 -3 7055 6226 6 1153 32977 84 4 1 chr6 74531468 74537636 -74979401 - L1Md_F2 LINE L1 -3 6579 389 6 1153 207 0 0 0 chr6 74537890 74537913 -74979124 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1153 608 102 10 0 chr6 74538580 74538678 -74978359 + (TCC)n Simple_repeat Simple_repeat 2 100 0 6 1153 23 33 0 0 chr6 74538949 74538979 -74978058 + AT_rich Low_complexity Low_complexity 1 30 0 6 1153 271 246 0 0 chr6 74539704 74539765 -74977272 + CT-rich Low_complexity Low_complexity 2 62 0 6 1153 264 300 44 11 chr6 74539823 74539914 -74977123 - B4A SINE B4 -3 289 196 6 1153 381 133 20 10 chr6 74539940 74540039 -74976998 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 6 1153 2165 260 43 29 chr6 74541205 74541970 -74975067 + Lx7 LINE L1 6884 7689 -7 6 1153 23 0 0 0 chr6 74542091 74542114 -74974923 + AT_rich Low_complexity Low_complexity 1 23 0 7 1153 201 211 51 31 chr6 74542349 74542447 -74974590 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 7 1153 215 156 22 0 chr6 74542351 74542396 -74974641 + (TATG)n Simple_repeat Simple_repeat 3 48 0 7 1153 336 64 0 0 chr6 74543261 74543308 -74973729 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 7 1153 350 291 19 19 chr6 74543317 74543422 -74973615 - B3A SINE B2 -74 124 20 7 1153 297 51 0 0 chr6 74543754 74543793 -74973244 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1153 414 143 11 21 chr6 74543818 74543911 -74973126 + G-rich Low_complexity Low_complexity 1 92 0 7 1153 614 77 29 0 chr6 74544377 74544481 -74972556 + (TTTTC)n Simple_repeat Simple_repeat 3 109 0 7 1153 1106 83 0 0 chr6 74544503 74544648 -74972389 - B1_Mus1 SINE Alu -2 146 2 7 1153 901 154 0 47 chr6 74545037 74545187 -74971850 + B2_Mm2 SINE B2 1 143 -52 7 1153 24 53 0 0 chr6 74545552 74545590 -74971447 + AT_rich Low_complexity Low_complexity 1 38 0 8 1153 441 0 0 0 chr6 74545822 74545871 -74971166 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1153 779 128 79 20 chr6 74547379 74547531 -74969506 + Lx3_Mus LINE L1 6846 7006 -3 8 1153 29922 28 0 1 chr6 74547535 74551118 -74965919 + L1Md_A LINE L1 2010 5590 -293 8 1153 7931 57 0 0 chr6 74551122 74552107 -74964930 + L1Md_A LINE L1 5597 6581 -1 8 1153 747 343 0 0 chr6 74552318 74552531 -74964506 - B3 SINE B2 0 216 4 8 1153 3988 57 2 14 chr6 74552832 74553352 -74963685 - L1Md_F2 LINE L1 -12 6570 6057 8 1153 1835 172 84 73 chr6 74554302 74554684 -74962353 + ORR1B1 LTR MaLR 1 386 -8 8 1153 414 0 0 0 chr6 74555200 74555246 -74961791 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1153 490 318 88 60 chr6 74555339 74555590 -74961447 - B4 SINE B4 -6 286 29 8 1153 450 287 193 0 chr6 74555638 74555819 -74961218 - B3 SINE B2 0 216 1 8 1153 243 242 0 0 chr6 74555899 74555961 -74961076 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 9 1153 559 333 7 20 chr6 74556239 74556392 -74960645 - B4A SINE B4 -141 151 1 9 1153 243 219 45 13 chr6 74556921 74557071 -74959966 + (TA)n Simple_repeat Simple_repeat 1 155 0 9 1153 279 0 0 0 chr6 74557071 74557102 -74959935 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1153 243 219 45 13 chr6 74557102 74557108 -74959929 + (TA)n Simple_repeat Simple_repeat 1 6 0 9 1153 2148 210 30 26 chr6 74557258 74557761 -74959276 + RLTR11A2 LTR ERVK 2 506 -21 9 1153 4576 72 3 3 chr6 74557761 74558364 -74958673 - L1Md_F2 LINE L1 0 6582 5980 9 1153 6665 122 23 23 chr6 74558982 74560176 -74956861 - Lx LINE L1 -2 6652 5454 9 1153 456 19 0 0 chr6 74560249 74560302 -74956735 + (TTA)n Simple_repeat Simple_repeat 2 54 0 9 1153 207 88 0 0 chr6 74560393 74560427 -74956610 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1153 182 116 0 23 chr6 74560481 74560525 -74956512 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 1 1153 422 363 33 5 chr6 74560528 74560741 -74956296 - Lx8 LINE L1 -136 7337 7119 1 1153 27 29 0 0 chr6 74561038 74561072 -74955965 + AT_rich Low_complexity Low_complexity 1 34 0 1 1153 445 297 25 50 chr6 74561135 74561313 -74955724 + B3A SINE B2 2 176 -22 1 1153 417 20 0 0 chr6 74561313 74561363 -74955674 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1153 445 297 25 50 chr6 74561363 74561386 -74955651 + B3A SINE B2 177 198 0 1 1153 524 310 60 81 chr6 74561561 74561796 -74955241 - MTEb LTR MaLR 0 379 150 1 1153 316 229 165 37 chr6 74562059 74562168 -74954869 - MTEb LTR MaLR -256 123 1 1 1153 22 56 0 0 chr6 74562525 74562561 -74954476 + AT_rich Low_complexity Low_complexity 1 36 0 1 1153 21 0 0 0 chr6 74563084 74563105 -74953932 + AT_rich Low_complexity Low_complexity 1 21 0 1 1153 396 370 25 47 chr6 74563120 74563355 -74953682 + B4A SINE B4 14 243 -49 1 1153 22 0 0 0 chr6 74563510 74563532 -74953505 + AT_rich Low_complexity Low_complexity 1 22 0 1 1153 369 0 0 0 chr6 74563616 74563657 -74953380 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1153 3429 190 58 60 chr6 74564112 74564900 -74952137 + RLTR25B LTR ERVK 1 787 -241 1 1153 439 281 26 0 chr6 74564896 74565010 -74952027 + RLTR25B LTR ERVK 912 1028 0 1 1153 1839 103 7 7 chr6 74565418 74565701 -74951336 + L1_Mus4 LINE L1 6354 6636 0 1 1153 189 107 0 0 chr6 74565807 74565835 -74951202 + (TATG)n Simple_repeat Simple_repeat 1 28 0 1 1153 180 292 0 0 chr6 74566188 74566236 -74950801 + MIRc SINE MIR 203 250 -18 1 1153 3417 86 2 0 chr6 74566940 74567396 -74949641 + L1_Mus2 LINE L1 6109 6565 -1 1 1153 588 199 78 35 chr6 74567910 74568051 -74948986 - B1_Mur3 SINE Alu -1 148 2 1 1153 444 264 103 54 chr6 74568452 74568636 -74948401 + ORR1B2 LTR MaLR 167 359 -8 1 1153 4359 240 40 116 chr6 74568636 74570270 -74946767 + ORR1B2-int LTR MaLR 1 1509 0 1 1153 1734 174 81 6 chr6 74570272 74570607 -74946430 + ORR1B2 LTR MaLR 3 362 -5 1 1153 199 54 26 26 chr6 74571044 74571082 -74945955 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1 1153 320 303 16 34 chr6 74571088 74571237 -74945800 - Lx5 LINE L1 -44 7416 7285 1 1153 231 253 65 54 chr6 74571238 74571330 -74945707 + Tigger1 DNA MER2_type 743 835 -1583 1 1153 1192 247 66 0 chr6 74571337 74571624 -74945413 - Lx5 LINE L1 -268 6782 6477 1 1153 341 171 43 0 chr6 74571614 74571684 -74945353 - Lx6 LINE L1 -858 6602 6530 1 1153 550 213 71 0 chr6 74571674 74571815 -74945222 - L1_Mur3 LINE L1 -670 5210 5060 1 1153 5524 227 62 32 chr6 74571825 74573153 -74943884 - L1_Mur3 LINE L1 -1355 4525 3203 1 1153 441 0 0 0 chr6 74573153 74573202 -74943835 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1 1153 5524 227 62 32 chr6 74573202 74573635 -74943402 - L1_Mur3 LINE L1 -2678 3202 2714 1 1153 2103 261 123 7 chr6 74573940 74574622 -74942415 + Lx7 LINE L1 6670 7430 -266 1 1153 322 289 113 36 chr6 74574910 74575104 -74941933 + B3 SINE B2 1 209 -7 1 1153 25 31 0 0 chr6 74575104 74575136 -74941901 + AT_rich Low_complexity Low_complexity 1 32 0 1 1153 213 65 0 0 chr6 74575229 74575260 -74941777 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1153 180 0 0 0 chr6 74576077 74576097 -74940940 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1153 1538 171 36 8 chr6 74577060 74577368 -74939669 - ORR1A2 LTR MaLR -24 354 31 1 1153 23 33 0 0 chr6 74577375 74577405 -74939632 + AT_rich Low_complexity Low_complexity 1 30 0 1 1153 469 401 18 50 chr6 74577444 74577662 -74939375 - ID_B1 SINE B4 -12 212 2 1 1153 1595 221 37 11 chr6 74577994 74578347 -74938690 + Lx5 LINE L1 6079 6440 -610 1 1153 1775 228 10 106 chr6 74578337 74578550 -74938487 + Lx5 LINE L1 6607 6809 -241 1 1153 207 0 0 0 chr6 74578550 74578573 -74938464 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1153 1775 228 10 106 chr6 74578573 74578849 -74938188 + Lx5 LINE L1 6810 7049 -1 1 1153 291 155 0 66 chr6 74578881 74578957 -74938080 + Lx9 LINE L1 4918 4988 -859 1 1153 303 36 53 35 chr6 74578959 74579016 -74938021 + (CAAAA)n Simple_repeat Simple_repeat 5 62 0 1 144 7192 72 1 1 chr6 74579099 74580022 -74937015 + L1_Mus2 LINE L1 5642 6564 -2 1 1154 1937 259 49 46 chr6 74580148 74580433 -74936604 + Lx9 LINE L1 5070 5332 -515 1 1154 774 64 0 0 chr6 74580433 74580542 -74936495 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 1154 396 0 0 0 chr6 74580542 74580585 -74936452 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1154 1937 258 51 48 chr6 74580585 74581150 -74935887 + Lx9 LINE L1 5333 5941 -1703 1 1154 1298 263 34 0 chr6 74581336 74581659 -74935378 + Lx9 LINE L1 6509 6842 -802 1 1154 1116 159 147 39 chr6 74581733 74582040 -74934997 + Lx9 LINE L1 7298 7637 -7 1 1154 21 0 0 0 chr6 74582298 74582319 -74934718 + AT_rich Low_complexity Low_complexity 1 21 0 1 1154 389 365 29 21 chr6 74582361 74582501 -74934536 + B4A SINE B4 2 142 -150 1 1154 559 161 18 99 chr6 74582496 74582717 -74934320 + RMER17C LTR ERVK 72 274 -136 1 1154 281 291 104 28 chr6 74582730 74582836 -74934201 + B4A SINE B4 159 272 -20 1 1154 189 74 0 0 chr6 74582901 74582928 -74934109 + (CATA)n Simple_repeat Simple_repeat 4 30 0 1 1154 195 152 0 0 chr6 74583136 74583182 -74933855 + CT-rich Low_complexity Low_complexity 1 46 0 1 1154 24 0 0 0 chr6 74583580 74583604 -74933433 + AT_rich Low_complexity Low_complexity 1 24 0 1 1154 315 65 0 0 chr6 74583828 74583874 -74933163 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1154 239 0 0 31 chr6 74584683 74584715 -74932322 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1154 500 311 106 19 chr6 74584785 74585076 -74931961 + MTEa LTR MaLR 33 374 -5 1 1154 266 257 53 13 chr6 74585182 74585257 -74931780 - B3A SINE B2 -120 78 1 1 1154 490 333 10 10 chr6 74585753 74585947 -74931090 - B3A SINE B2 -1 197 4 1 1154 386 353 120 18 chr6 74588555 74589191 -74927846 - L1MEc LINE L1 -2104 4215 3516 1 1154 513 252 73 0 chr6 74589332 74589455 -74927582 + B1_Mur3 SINE Alu 15 146 -3 1 1154 199 133 22 22 chr6 74589456 74589502 -74927535 + (TAA)n Simple_repeat Simple_repeat 3 48 0 1 1154 304 345 50 14 chr6 74589587 74589728 -74927309 - B1F SINE Alu -2 147 2 1 1154 6313 138 48 6 chr6 74589984 74591081 -74925956 + Lx3A LINE L1 5829 6971 -10 1 1154 495 0 0 0 chr6 74591091 74591146 -74925891 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 1154 570 318 73 0 chr6 74591650 74591829 -74925208 - B3 SINE B2 -24 192 1 1 1154 3849 70 12 0 chr6 74591883 74592384 -74924653 - L1Md_F2 LINE L1 -475 6107 5601 1 1154 3345 84 23 19 chr6 74592386 74592872 -74924165 + L1Md_F2 LINE L1 6095 6582 0 1 1154 664 99 40 0 chr6 74593672 74593773 -74923264 - B1_Mus1 SINE Alu -42 106 2 1 1154 392 252 54 36 chr6 74593685 74593796 -74923241 - B4 SINE B4 -113 179 67 1 1154 382 343 160 25 chr6 74593796 74594352 -74922685 - L1MEc LINE L1 -5236 1164 534 1 1154 825 206 0 6 chr6 74594379 74594535 -74922502 + RMER6C LTR ERVK 1 155 -565 1 1154 865 241 40 14 chr6 74594547 74594561 -74922476 - Lx5 LINE L1 -3 7047 7033 1 1154 324 70 0 0 chr6 74594561 74594604 -74922433 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1154 865 241 40 14 chr6 74594604 74594812 -74922225 - Lx5 LINE L1 -18 7032 6820 1 1154 363 283 48 16 chr6 74594908 74595095 -74921942 - L1M3 LINE L1 -2692 3448 3256 1 1154 268 269 91 103 chr6 74595186 74595671 -74921366 - L1M3 LINE L1 -3015 3125 2647 1 1154 2220 217 72 15 chr6 74595673 74596212 -74920825 + RMER6C LTR ERVK 121 690 0 1 1154 1132 290 14 47 chr6 74597044 74597388 -74919649 - ORR1E LTR MaLR -26 333 1 1 1154 1137 212 119 71 chr6 74598968 74599389 -74917648 + RMER10A LTR ERVL 2 442 0 1 1154 1763 309 85 21 chr6 74600371 74601149 -74915888 - Lx8 LINE L1 -2 7471 6644 1 1154 10828 189 19 5 chr6 74602122 74605365 -74911672 - Lx2B LINE L1 -15 6985 3688 1 1154 2732 108 5 0 chr6 74605382 74605770 -74911267 - Lx3A LINE L1 -31 6950 6561 1 1154 1692 90 8 13 chr6 74605768 74606005 -74911032 - L1Md_F2 LINE L1 -51 6531 6296 1 1154 343 106 0 0 chr6 74606228 74606275 -74910762 - Lx3_Mus LINE L1 -416 6593 6547 1 1154 3114 164 17 0 chr6 74606275 74606878 -74910159 - Lx2B LINE L1 -2180 3706 3094 1 1154 3249 158 50 111 chr6 74606876 74607628 -74909409 + L1_Mur3 LINE L1 2301 3002 -912 1 1154 7396 73 10 10 chr6 74607628 74608624 -74908413 + L1Md_F2 LINE L1 5587 6582 0 1 1154 3249 184 81 69 chr6 74608624 74608774 -74908263 + L1_Mur3 LINE L1 3001 3165 -2715 1 1154 288 20 61 0 chr6 74608774 74608823 -74908214 + (CAAAAA)n Simple_repeat Simple_repeat 6 57 0 1 1154 2285 63 16 0 chr6 74608833 74609149 -74907888 + RLTR10 LTR ERVK 1 321 -69 1 1154 305 61 0 0 chr6 74609180 74609229 -74907808 + RLTR10 LTR ERVK 259 307 -83 1 1154 957 62 0 15 chr6 74609229 74609361 -74907676 + RLTR10 LTR ERVK 259 388 -2 1 1154 356 168 21 0 chr6 74609543 74609638 -74907399 + (CAGA)n Simple_repeat Simple_repeat 4 100 0 1 1154 207 69 0 0 chr6 74609639 74609668 -74907369 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1154 562 311 13 19 chr6 74609910 74610105 -74906932 + B3A SINE B2 1 183 -33 1 1154 288 0 0 0 chr6 74611128 74611160 -74905877 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1154 183 80 0 0 chr6 74611465 74611490 -74905547 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 1 1154 700 238 22 50 chr6 74611532 74611713 -74905324 + Lx6 LINE L1 6519 6694 -766 1 1154 1392 281 95 7 chr6 74611728 74612140 -74904897 + Lx6 LINE L1 6756 7203 -257 1 1154 547 162 17 8 chr6 74612295 74612413 -74904624 + GA-rich Low_complexity Low_complexity 2 120 0 1 1154 298 316 108 0 chr6 74612413 74612571 -74904466 - MLT2C2 LTR ERVL -289 175 1 1 1154 219 264 42 52 chr6 74612770 74612866 -74904171 - B2_Mm2 SINE B2 -70 125 31 1 1154 23 68 0 0 chr6 74613273 74613317 -74903720 + AT_rich Low_complexity Low_complexity 1 44 0 1 1154 592 243 40 0 chr6 74613430 74613467 -74903570 + Lx LINE L1 6195 6237 -417 1 1154 466 128 0 11 chr6 74613467 74613562 -74903475 - L1Md_F2 LINE L1 -2 6580 6487 1 1154 1043 76 0 0 chr6 74613562 74613694 -74903343 + L1_Mus1 LINE L1 6239 6370 -197 1 1154 699 46 0 0 chr6 74613752 74613839 -74903198 + (GGAA)n Simple_repeat Simple_repeat 3 89 0 1 1154 292 309 112 0 chr6 74613844 74613996 -74903041 - MLT2C2 LTR ERVL -295 169 1 1 1154 219 264 42 52 chr6 74614195 74614291 -74902746 - B2_Mm2 SINE B2 -70 125 31 1 1154 23 68 0 0 chr6 74614697 74614741 -74902296 + AT_rich Low_complexity Low_complexity 1 44 0 1 1154 592 243 40 0 chr6 74614854 74614891 -74902146 + Lx LINE L1 6195 6237 -417 1 1154 466 128 0 11 chr6 74614891 74614986 -74902051 - L1Md_F2 LINE L1 -2 6580 6487 1 1154 1043 76 0 0 chr6 74614986 74615118 -74901919 + L1_Mus1 LINE L1 6239 6370 -197 1 1154 813 192 66 85 chr6 74615134 74615176 -74901861 - RMER6B LTR ERVK 0 461 423 1 1154 770 81 0 9 chr6 74615176 74615288 -74901749 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 1 1154 813 192 66 85 chr6 74615288 74615456 -74901581 - RMER6B LTR ERVK -39 422 255 1 1154 434 311 67 28 chr6 74615950 74616205 -74900832 + Lx9 LINE L1 7163 7427 -217 1 1154 261 0 0 0 chr6 74616238 74616267 -74900770 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1154 211 206 26 64 chr6 74616293 74616371 -74900666 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 2 1154 30 0 0 0 chr6 74616413 74616443 -74900594 + AT_rich Low_complexity Low_complexity 1 30 0 2 1154 640 378 21 3 chr6 74617385 74617714 -74899323 - Lx8 LINE L1 -190 7283 6949 2 1154 23988 78 3 4 chr6 74618033 74622069 -74894968 - L1Md_F3 LINE L1 -2 6582 2553 2 1154 471 375 24 78 chr6 74622257 74622341 -74894696 + B4A SINE B4 1 84 -208 2 1154 369 43 0 0 chr6 74622341 74622388 -74894649 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1154 471 375 24 78 chr6 74622388 74622598 -74894439 + B4A SINE B4 85 279 -13 2 1154 225 108 0 0 chr6 74622614 74622651 -74894386 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1154 266 158 0 0 chr6 74622811 74622849 -74894188 + tRNA-Met_ tRNA tRNA 1 38 -38 2 1154 207 0 0 0 chr6 74623057 74623080 -74893957 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1154 7918 166 6 30 chr6 74623102 74623197 -74893840 - L1_Mm LINE L1 -519 5364 5293 2 1154 1715 81 0 0 chr6 74623197 74623419 -74893618 - L1_Mus1 LINE L1 0 6567 6346 2 1154 7918 166 6 30 chr6 74623419 74624883 -74892154 - Lx LINE L1 -591 5292 3841 2 1154 6466 150 14 2 chr6 74624878 74626152 -74890885 + Lx LINE L1 5364 6652 -2 2 1154 23 78 0 0 chr6 74626877 74626928 -74890109 + AT_rich Low_complexity Low_complexity 1 51 0 2 1154 4621 88 20 5 chr6 74627439 74628078 -74888959 - L1Md_F2 LINE L1 -13 6569 5921 2 1154 311 202 0 25 chr6 74628293 74628374 -74888663 + L1MA5 LINE L1 6222 6300 0 2 1154 506 284 65 9 chr6 74628719 74628950 -74888087 + Lx8 LINE L1 5595 5838 -1635 2 1154 549 355 20 0 chr6 74628982 74629185 -74887852 - ID_B1 SINE B4 -9 215 9 2 1154 732 92 0 0 chr6 74629471 74629590 -74887447 + (TC)n Simple_repeat Simple_repeat 2 120 0 2 1154 267 79 0 0 chr6 74629590 74629627 -74887410 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1154 431 338 112 22 chr6 74629710 74630031 -74887006 + MLT2B4 LTR ERVL 3 352 -204 2 1154 186 71 0 0 chr6 74630137 74630165 -74886872 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1154 237 250 0 40 chr6 74630509 74630609 -74886428 + (TTAAA)n Simple_repeat Simple_repeat 1 96 0 2 1154 565 189 98 0 chr6 74630895 74631027 -74886010 - Lx9 LINE L1 -148 7496 7352 2 1154 406 317 92 40 chr6 74631032 74631206 -74885831 + B3A SINE B2 16 198 0 2 1154 9498 93 72 2 chr6 74631442 74633737 -74883300 - L1Md_F2 LINE L1 -4 6578 3872 2 1154 510 195 0 39 chr6 74633784 74633912 -74883125 - RLTR25A LTR ERVK -586 442 320 2 1154 1654 197 3 51 chr6 74633913 74634266 -74882771 + L1_Mur2 LINE L1 5460 5795 -82 2 1154 803 229 103 0 chr6 74634266 74634441 -74882596 - RLTR25A LTR ERVK -681 347 155 2 1154 832 265 11 6 chr6 74634469 74634651 -74882386 - RLTR25A LTR ERVK -920 183 1 2 1154 531 69 0 0 chr6 74634653 74634725 -74882312 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1154 39 60 0 0 chr6 74635558 74635625 -74881412 + AT_rich Low_complexity Low_complexity 1 67 0 2 1154 24 53 0 0 chr6 74636340 74636378 -74880659 + AT_rich Low_complexity Low_complexity 1 38 0 2 1154 432 0 0 0 chr6 74636847 74636895 -74880142 + (A)n Simple_repeat Simple_repeat 1 48 0 2 1154 1551 226 151 0 chr6 74637052 74637464 -74879573 - Lx4B LINE L1 -833 6225 5752 2 1154 2077 253 27 13 chr6 74637463 74638070 -74878967 + Lx4B LINE L1 6241 6854 -122 2 1154 414 0 0 0 chr6 74638070 74638116 -74878921 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1154 1722 296 54 22 chr6 74638116 74638178 -74878859 + Lx4B LINE L1 6855 6934 -42 2 1154 824 275 33 14 chr6 74638212 74638422 -74878615 - B3 SINE B2 -1 215 2 2 1154 294 323 0 48 chr6 74638469 74638635 -74878402 - L1MC LINE L1 -1842 4304 4147 2 1154 30 97 0 0 chr6 74639772 74639865 -74877172 + AT_rich Low_complexity Low_complexity 1 93 0 2 1154 22 0 0 0 chr6 74640236 74640258 -74876779 + AT_rich Low_complexity Low_complexity 1 22 0 2 1154 1849 167 168 105 chr6 74640478 74641126 -74875911 - RMER6C LTR ERVK 0 690 2 2 1154 22 70 0 0 chr6 74641352 74641395 -74875642 + AT_rich Low_complexity Low_complexity 1 43 0 2 1154 44 35 0 0 chr6 74641520 74641578 -74875459 + AT_rich Low_complexity Low_complexity 1 58 0 2 1154 433 279 20 79 chr6 74642178 74642380 -74874657 + RMER15-int LTR ERVL 4700 4889 -110 2 1154 388 360 104 19 chr6 74642863 74643228 -74873809 + L1MC3 LINE L1 6562 6957 -828 2 1154 540 332 32 103 chr6 74644815 74645127 -74871910 + B4A SINE B4 1 290 -2 2 1154 399 320 13 45 chr6 74646422 74646576 -74870461 + B3A SINE B2 2 150 -48 2 1154 495 0 0 0 chr6 74646593 74646648 -74870389 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1154 336 380 19 45 chr6 74647375 74647532 -74869505 - B3A SINE B2 -5 193 41 2 1154 22 56 0 0 chr6 74647841 74647877 -74869160 + AT_rich Low_complexity Low_complexity 1 36 0 2 1154 21 36 0 0 chr6 74648480 74648508 -74868529 + AT_rich Low_complexity Low_complexity 1 28 0 2 1154 253 159 14 42 chr6 74649043 74649115 -74867922 + A-rich Low_complexity Low_complexity 2 71 0 2 1154 1261 265 110 2 chr6 74649224 74649281 -74867756 - MT2A LTR ERVL 0 533 477 2 1154 538 38 95 0 chr6 74649281 74649386 -74867651 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 2 1154 1261 265 110 2 chr6 74649386 74649809 -74867228 - MT2A LTR ERVL -57 476 2 2 1154 37885 31 0 0 chr6 74650096 74656347 -74860690 - L1Md_T LINE L1 0 6585 238 2 1154 348 297 9 9 chr6 74656804 74656916 -74860121 - MT2A LTR ERVL -421 112 1 2 1154 560 280 63 45 chr6 74656931 74657056 -74859981 - Lx8 LINE L1 -194 7279 7154 2 1154 432 0 0 0 chr6 74657056 74657104 -74859933 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1154 560 280 63 45 chr6 74657104 74657199 -74859838 - Lx8 LINE L1 -320 7153 7055 2 1154 238 315 19 0 chr6 74658167 74658221 -74858816 + B3A SINE B2 1 55 -143 2 1154 3438 65 0 0 chr6 74658221 74658667 -74858370 - L1_Mm LINE L1 -1059 4824 4379 2 1154 378 0 0 0 chr6 74658719 74658761 -74858276 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 1154 30 0 0 0 chr6 74658783 74658813 -74858224 + AT_rich Low_complexity Low_complexity 1 30 0 2 1154 331 343 110 38 chr6 74659654 74659945 -74857092 + MLT1B LTR MaLR 8 319 -71 2 1154 1164 36 0 0 chr6 74661271 74661411 -74855626 - B1_Mus1 SINE Alu -8 140 1 2 1154 552 349 9 0 chr6 74661901 74662113 -74854924 - Lx8 LINE L1 -286 7187 6974 2 1154 1949 155 198 22 chr6 74662367 74662782 -74854255 - RLTR19 LTR ERVK -6 493 6 2 1154 25929 83 6 14 chr6 74663272 74667251 -74849786 + L1Md_F3 LINE L1 420 4373 -1510 2 1154 2937 63 0 3 chr6 74667251 74667630 -74849407 + L1Md_F2 LINE L1 6197 6574 -8 2 1154 20326 60 8 8 chr6 74667630 74669538 -74847499 + L1Md_F3 LINE L1 4374 6288 -296 2 1154 819 182 51 13 chr6 74670103 74670259 -74846778 + RMER19B LTR ERVK 357 518 -384 2 1154 2503 109 3 0 chr6 74670267 74670617 -74846420 + L1_Mus2 LINE L1 6216 6566 0 2 1154 3402 274 64 29 chr6 74670668 74671734 -74845303 - Lx6 LINE L1 -10 7450 6348 2 1154 891 106 0 0 chr6 74671857 74672017 -74845020 + (GA)n Simple_repeat Simple_repeat 2 161 0 2 1154 23 0 0 0 chr6 74673608 74673631 -74843406 + AT_rich Low_complexity Low_complexity 1 23 0 2 1154 5138 88 3 29 chr6 74673636 74674384 -74842653 - L1_Mus2 LINE L1 -1 6565 5838 2 1154 3507 104 39 4 chr6 74674384 74674895 -74842142 + L1_Mus2 LINE L1 5332 5860 -23 2 1154 361 291 0 11 chr6 74675335 74675422 -74841615 + MLT1A0 LTR MaLR 252 337 -28 2 1154 21 36 0 0 chr6 74675512 74675540 -74841497 + AT_rich Low_complexity Low_complexity 1 28 0 2 1154 315 177 0 0 chr6 74675540 74675602 -74841435 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1154 360 19 0 0 chr6 74675736 74675788 -74841249 + L1_Mus4 LINE L1 6579 6630 -6 2 1154 288 299 0 0 chr6 74675826 74675893 -74841144 - B3 SINE B2 -149 67 1 2 1154 858 118 74 0 chr6 74676177 74676312 -74840725 + B1_Mus1 SINE Alu 1 145 -3 2 1154 206 32 32 0 chr6 74676314 74676345 -74840692 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 2 1154 22 0 0 0 chr6 74676702 74676724 -74840313 + AT_rich Low_complexity Low_complexity 1 22 0 2 1154 1050 67 0 0 chr6 74676732 74676866 -74840171 + B1_Mm SINE Alu 1 134 -13 2 1154 345 47 0 0 chr6 74676866 74676909 -74840128 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 2 1154 288 94 15 30 chr6 74677959 74677982 -74839055 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1154 369 0 0 0 chr6 74677982 74678023 -74839014 + (TAG)n Simple_repeat Simple_repeat 3 43 0 2 1154 288 94 15 30 chr6 74678023 74678065 -74838972 + (TTG)n Simple_repeat Simple_repeat 3 45 0 2 1154 331 269 0 0 chr6 74678167 74678234 -74838803 + ID4 SINE ID 6 72 -11 2 1154 309 311 22 22 chr6 74678414 74678552 -74838485 + CT-rich Low_complexity Low_complexity 4 141 0 2 1154 6260 169 56 35 chr6 74679127 74680581 -74836456 - Lx3C LINE L1 -5 6995 5587 2 1154 30 27 0 0 chr6 74680613 74680650 -74836387 + AT_rich Low_complexity Low_complexity 1 37 0 2 1154 35 24 0 0 chr6 74682169 74682211 -74834826 + AT_rich Low_complexity Low_complexity 1 42 0 2 1154 398 159 11 0 chr6 74683046 74683134 -74833903 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 2 1154 315 49 0 0 chr6 74683162 74683203 -74833834 - L1_Mm LINE L1 -1431 4452 4412 2 1154 1729 99 0 8 chr6 74683203 74683458 -74833579 + L1Md_F2 LINE L1 6317 6569 -13 2 1154 303 28 0 0 chr6 74683503 74683539 -74833498 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1154 554 323 20 5 chr6 74685275 74685477 -74831560 + B3 SINE B2 1 205 -11 2 1154 195 42 0 0 chr6 74685888 74685912 -74831125 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1154 304 285 100 81 chr6 74686525 74686735 -74830302 + RMER2 LTR ERV1 354 567 0 2 1154 241 239 206 0 chr6 74687022 74687114 -74829923 + Lx8 LINE L1 6743 6853 -620 2 1154 35 71 0 0 chr6 74687538 74687608 -74829429 + AT_rich Low_complexity Low_complexity 1 70 0 2 1154 981 49 0 0 chr6 74687840 74687963 -74829074 + (TTTC)n Simple_repeat Simple_repeat 1 123 0 2 1154 328 239 191 128 chr6 74688115 74688388 -74828649 + B4 SINE B4 3 292 0 2 1154 535 322 60 60 chr6 74688430 74688678 -74828359 + B4A SINE B4 1 248 -44 2 1154 1182 246 106 145 chr6 74688883 74689602 -74827435 - RMER6D LTR ERVK -29 691 1 3 1154 23 78 0 0 chr6 74689602 74689653 -74827384 + AT_rich Low_complexity Low_complexity 1 51 0 3 1154 183 333 38 15 chr6 74690076 74690207 -74826830 - MIRb SINE MIR -12 256 123 3 1154 873 156 0 72 chr6 74690784 74690977 -74826060 + Lx4B LINE L1 6876 7054 -4 3 1154 2688 199 117 59 chr6 74691160 74691904 -74825133 + RMER21B LTR ERV1 33 819 -23 3 1154 372 244 11 11 chr6 74691905 74691992 -74825045 + RMER21B LTR ERV1 756 842 0 3 1154 273 172 78 0 chr6 74692131 74692195 -74824842 - Lx9 LINE L1 -175 7469 7401 3 1154 256 239 0 29 chr6 74692201 74692270 -74824767 + Lx9 LINE L1 6879 6945 -699 3 1154 623 277 36 106 chr6 74693685 74694016 -74823021 + RMER15 LTR ERVL 28 335 -240 3 1154 1445 203 55 39 chr6 74694260 74694572 -74822465 - ORR1A4 LTR MaLR -12 317 1 3 1154 442 357 127 31 chr6 74694614 74694874 -74822163 - B4A SINE B4 -6 286 2 3 1154 1121 245 28 50 chr6 74696689 74697011 -74820026 - Lx2B LINE L1 0 7000 6686 3 1154 1597 223 90 2 chr6 74697006 74697406 -74819631 - Lx2B LINE L1 -568 6432 5998 3 1154 1126 179 5 39 chr6 74697401 74697727 -74819310 - Lx2B LINE L1 -937 6113 5841 3 1154 1508 122 40 0 chr6 74698078 74698331 -74818706 + Lx2 LINE L1 6730 6992 -5 3 1154 27 0 0 0 chr6 74698400 74698427 -74818610 + AT_rich Low_complexity Low_complexity 1 27 0 3 1154 303 261 31 94 chr6 74698548 74698675 -74818362 + L1MA9 LINE L1 5309 5427 -746 3 1154 311 343 92 12 chr6 74698837 74699165 -74817872 + L1MA9 LINE L1 5860 6213 -99 3 1154 222 143 48 0 chr6 74699165 74699228 -74817809 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1154 10993 55 4 0 chr6 74700036 74701496 -74815541 - L1Md_F3 LINE L1 -649 5935 4472 3 1154 5095 53 3 2 chr6 74701496 74702136 -74814901 + L1Md_F3 LINE L1 5932 6572 -12 3 1154 30 69 0 0 chr6 74702635 74702693 -74814344 + AT_rich Low_complexity Low_complexity 1 58 0 3 1154 542 321 0 0 chr6 74702759 74702890 -74814147 + RSINE1 SINE B4 35 165 0 3 1154 631 222 131 5 chr6 74702974 74703173 -74813864 + Lx7 LINE L1 6063 6286 -1410 3 1154 784 258 18 0 chr6 74703229 74703396 -74813641 + Lx7 LINE L1 6371 6540 -1156 3 1154 1135 265 179 73 chr6 74703392 74704018 -74813019 + Lx7 LINE L1 7004 7696 0 3 1154 402 277 131 21 chr6 74704110 74704346 -74812691 - L1ME2 LINE L1 -191 5973 5712 3 1154 1817 190 0 0 chr6 74704367 74704720 -74812317 - L1_Mur1 LINE L1 -627 5259 4907 3 1154 5083 117 20 4 chr6 74704710 74705779 -74811258 + Lx LINE L1 5238 6324 -330 3 1154 333 0 0 0 chr6 74705885 74705922 -74811115 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1154 354 330 34 30 chr6 74706243 74706512 -74810525 - L1MD LINE L1 -537 5822 5553 3 1154 478 321 24 59 chr6 74706961 74707130 -74809907 - B3A SINE B2 -33 165 3 3 1154 925 205 12 122 chr6 74707195 74707450 -74809587 - Lx6 LINE L1 -633 6827 6601 3 1154 921 207 27 0 chr6 74707448 74707636 -74809401 + Lx6 LINE L1 6345 6537 -923 3 1154 681 200 99 6 chr6 74707683 74707854 -74809183 - L1_Mur2 LINE L1 -697 5180 4994 3 1154 847 190 51 94 chr6 74707853 74708109 -74808928 - L1_Mur2 LINE L1 -1186 4691 4447 3 1154 213 333 14 0 chr6 74709528 74709597 -74807440 + B1F SINE Alu 73 142 -7 3 1154 212 216 20 0 chr6 74710280 74710331 -74806706 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 144 488 332 123 18 chr6 74710807 74711141 -74805896 + MTEb LTR MaLR 3 371 -8 3 1155 4014 183 64 68 chr6 74711211 74712097 -74804940 + RMER19B LTR ERVK 3 885 -17 3 1155 1007 82 8 0 chr6 74712097 74712231 -74804806 + B1_Mus1 SINE Alu 1 135 -13 3 1155 426 20 0 0 chr6 74712231 74712282 -74804755 + (CAA)n Simple_repeat Simple_repeat 1 51 0 3 1155 24 32 0 0 chr6 74712542 74712573 -74804464 + AT_rich Low_complexity Low_complexity 1 31 0 3 1155 216 130 0 0 chr6 74714291 74714337 -74802700 + (T)n Simple_repeat Simple_repeat 1 46 0 3 1155 319 85 17 36 chr6 74714493 74714558 -74802479 - L1_Mus4 LINE L1 -1042 5955 5882 3 1155 4664 108 8 10 chr6 74714558 74715267 -74801770 + L1_Mus4 LINE L1 5929 6636 0 3 1155 289 141 0 135 chr6 74715267 74715293 -74801744 - L1_Mus3 LINE L1 -1115 5885 5864 3 1155 1634 135 0 8 chr6 74715689 74715957 -74801080 - Lx2 LINE L1 0 6997 6732 3 1155 2643 113 60 0 chr6 74715957 74716339 -74800698 + Lx2 LINE L1 6328 6732 -265 3 1155 447 68 0 0 chr6 74716344 74716403 -74800634 + (T)n Simple_repeat Simple_repeat 1 59 0 3 1155 1130 62 7 0 chr6 74716403 74716548 -74800489 - B1_Mus2 SINE Alu 0 147 2 3 1155 354 156 0 0 chr6 74716673 74716737 -74800300 + T-rich Low_complexity Low_complexity 1 64 0 3 1155 21 0 0 0 chr6 74716751 74716772 -74800265 + AT_rich Low_complexity Low_complexity 1 21 0 3 1155 983 32 0 0 chr6 74716774 74716900 -74800137 - L1_Mus2 LINE L1 -1 6565 6440 3 1155 2215 64 0 0 chr6 74716900 74717181 -74799856 + L1_Mus2 LINE L1 5899 6179 -387 3 1155 238 281 61 0 chr6 74717183 74717265 -74799772 - B4A SINE B4 -205 87 1 3 1155 3482 185 71 1 chr6 74717371 74718156 -74798881 - L1_Mur3 LINE L1 -1708 4172 3333 3 1155 1519 192 31 31 chr6 74718156 74718483 -74798554 + ORR1A2 LTR MaLR 1 327 0 3 1155 2076 165 28 0 chr6 74718483 74718841 -74798196 + ORR1A2-int LTR MaLR 1 368 -1595 3 1155 367 240 167 23 chr6 74718839 74718971 -74798066 + MT2B2 LTR ERVL 161 311 -273 3 1155 4727 156 41 2 chr6 74718913 74719767 -74797270 + ORR1A2-int LTR MaLR 718 1604 -359 3 1155 336 273 53 35 chr6 74719748 74719862 -74797175 - B3A SINE B2 -82 116 1 3 1155 203 287 8 62 chr6 74720096 74720226 -74796811 + (CATATA)n Simple_repeat Simple_repeat 3 125 0 3 1155 21 57 0 0 chr6 74720507 74720542 -74796495 + AT_rich Low_complexity Low_complexity 1 35 0 3 1155 496 214 11 17 chr6 74721276 74721452 -74795585 + (TA)n Simple_repeat Simple_repeat 2 176 0 3 1155 252 86 0 0 chr6 74721527 74721562 -74795475 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3 1155 283 315 57 68 chr6 74721861 74722038 -74794999 - Lx8 LINE L1 -258 7215 7041 3 1155 577 247 10 134 chr6 74723032 74723161 -74793876 + MER34B-int LTR ERV1 1839 1938 -3418 3 1155 243 0 0 0 chr6 74723161 74723188 -74793849 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1155 577 247 10 134 chr6 74723188 74723371 -74793666 + MER34B-int LTR ERV1 1939 2112 -3244 3 1155 491 0 17 0 chr6 74724029 74724088 -74792949 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1155 228 321 71 12 chr6 74724177 74724262 -74792775 + L2c LINE L2 3282 3371 -16 3 1155 1331 218 101 73 chr6 74725145 74725571 -74791466 + Lx3C LINE L1 6523 6960 -16 3 1155 297 0 0 0 chr6 74725571 74725604 -74791433 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 3 1155 771 282 0 11 chr6 74725893 74726083 -74790954 - Lx6 LINE L1 -28 7432 7245 3 1155 24 0 0 0 chr6 74726570 74726594 -74790443 + AT_rich Low_complexity Low_complexity 1 24 0 3 1155 5944 74 8 14 chr6 74727388 74728193 -74788844 + L1_Mus2 LINE L1 5767 6566 0 3 1155 226 332 0 0 chr6 74728282 74728343 -74788694 - B1F1 SINE Alu -47 70 10 3 1155 435 162 0 0 chr6 74728668 74728748 -74788289 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1155 309 372 33 0 chr6 74730312 74730433 -74786604 - ID_B1 SINE B4 -17 207 83 3 1155 2020 219 50 0 chr6 74731308 74731732 -74785305 + Lx5 LINE L1 6478 6922 -128 3 1155 459 304 82 39 chr6 74731870 74732103 -74784934 + Lx8 LINE L1 7110 7352 -121 3 1155 211 182 0 0 chr6 74733505 74733538 -74783499 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1155 800 318 5 0 chr6 74733539 74733734 -74783303 - B3 SINE B2 -11 205 10 3 1155 367 317 58 22 chr6 74734638 74734864 -74782173 - Lx9 LINE L1 -149 7495 7262 3 1155 302 61 0 20 chr6 74734985 74735035 -74782002 + (CAAAAA)n Simple_repeat Simple_repeat 3 51 0 3 1155 188 86 0 28 chr6 74735150 74735186 -74781851 + (TTTTTA)n Simple_repeat Simple_repeat 3 37 0 3 1155 4395 46 0 2 chr6 74735190 74735731 -74781306 - L1Md_F3 LINE L1 -14 6570 6031 3 1155 27 29 0 0 chr6 74736063 74736097 -74780940 + AT_rich Low_complexity Low_complexity 1 34 0 3 1155 22 95 0 10 chr6 74736287 74736347 -74780690 + AT_rich Low_complexity Low_complexity 1 60 0 3 1155 6017 67 8 44 chr6 74736347 74737146 -74779891 - L1_Mus2 LINE L1 0 6566 5798 3 1155 1052 102 0 7 chr6 74737146 74737157 -74779880 - B1_Mus1 SINE Alu 0 148 138 3 1155 267 54 0 0 chr6 74737157 74737194 -74779843 + (TTG)n Simple_repeat Simple_repeat 3 39 0 3 1155 1052 102 0 7 chr6 74737194 74737330 -74779707 - B1_Mus1 SINE Alu -11 137 2 3 1155 6017 67 8 44 chr6 74737330 74737389 -74779648 - L1_Mus2 LINE L1 -769 5797 5739 3 1155 22 95 0 10 chr6 74737389 74737424 -74779613 + AT_rich Low_complexity Low_complexity 1 35 0 3 1155 1369 67 17 0 chr6 74737424 74737602 -74779435 - B2_Mm2 SINE B2 -14 181 1 3 1155 2230 73 44 9 chr6 74737606 74737925 -74779112 - L1Md_F2 LINE L1 0 6582 6253 3 1155 3425 59 0 0 chr6 74737925 74738365 -74778672 + L1_Mm LINE L1 3993 4432 -1451 3 1155 2648 265 40 43 chr6 74738671 74739437 -74777600 - Lx5 LINE L1 -10 7040 6277 3 1155 3035 75 3 0 chr6 74739799 74740186 -74776851 - L1_Mus2 LINE L1 -163 6403 6016 3 1155 423 137 47 138 chr6 74740182 74740314 -74776723 + L1_Mus3 LINE L1 6532 6638 0 3 1155 232 78 0 56 chr6 74740318 74740372 -74776665 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 3 1155 294 269 9 55 chr6 74740420 74740530 -74776507 + RMER2 LTR ERV1 452 556 -11 3 1155 610 282 61 10 chr6 74740546 74740743 -74776294 - Lx5 LINE L1 -781 6269 6063 3 1155 2733 188 10 17 chr6 74740744 74740817 -74776220 - L1_Mur2 LINE L1 -1168 4709 4634 3 1155 221 0 35 0 chr6 74740817 74740846 -74776191 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1155 2733 188 10 17 chr6 74740846 74741201 -74775836 - L1_Mur2 LINE L1 -1244 4633 4284 3 1155 254 26 53 0 chr6 74741201 74741239 -74775798 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1155 2733 188 10 17 chr6 74741239 74741387 -74775650 - L1_Mur2 LINE L1 -1594 4283 4138 3 1155 186 87 21 42 chr6 74741402 74741450 -74775587 + (TAAAA)n Simple_repeat Simple_repeat 2 48 0 3 1155 2599 90 0 0 chr6 74741473 74741819 -74775218 - ORR1A1 LTR MaLR 0 346 1 3 1155 3838 68 9 30 chr6 74741819 74742362 -74774675 - ORR1A1-int LTR MaLR 0 1792 1261 3 1155 268 133 0 0 chr6 74742345 74742390 -74774647 - ORR1A1 LTR MaLR -301 45 1 3 1155 232 295 0 13 chr6 74742390 74742458 -74774579 + MT2B2 LTR ERVL 518 584 0 3 1155 1764 204 58 58 chr6 74742458 74742886 -74774151 + MERVL_2A-int LTR ERVL 2924 3351 -2410 3 1155 976 219 15 10 chr6 74742887 74743085 -74773952 + MTC LTR MaLR 223 421 0 3 1155 5736 174 18 2 chr6 74743090 74744073 -74772964 - MERVL_2A-int LTR ERVL -2836 2925 1927 3 1155 233 270 0 0 chr6 74744270 74744333 -74772704 + MTEa LTR MaLR 311 373 -6 3 1155 21 0 0 0 chr6 74744540 74744561 -74772476 + AT_rich Low_complexity Low_complexity 1 21 0 3 1155 298 409 38 8 chr6 74744592 74744725 -74772312 - RSINE1 SINE B4 -23 142 6 4 1155 221 0 35 0 chr6 74745045 74745074 -74771963 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1155 213 196 0 0 chr6 74745141 74745187 -74771850 + CT-rich Low_complexity Low_complexity 1 46 0 4 1155 229 357 14 0 chr6 74745335 74745405 -74771632 + MLT1F2 LTR MaLR 338 408 -152 4 1155 29 0 0 0 chr6 74745445 74745474 -74771563 + AT_rich Low_complexity Low_complexity 1 29 0 4 1155 28 29 0 0 chr6 74746070 74746105 -74770932 + AT_rich Low_complexity Low_complexity 1 35 0 4 1155 363 23 0 0 chr6 74746404 74746448 -74770589 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1155 804 155 7 0 chr6 74746766 74746914 -74770123 - Lx2 LINE L1 0 6997 6849 4 1155 24 0 0 0 chr6 74747421 74747445 -74769592 + AT_rich Low_complexity Low_complexity 1 24 0 4 1155 201 94 0 0 chr6 74747709 74747741 -74769296 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1155 34 24 0 0 chr6 74747843 74747884 -74769153 + AT_rich Low_complexity Low_complexity 1 41 0 4 1155 24 67 0 0 chr6 74747980 74748025 -74769012 + AT_rich Low_complexity Low_complexity 1 45 0 4 1155 1694 172 42 78 chr6 74748543 74748953 -74768084 - Lx2B LINE L1 -2 6998 6604 4 1155 287 354 9 17 chr6 74749231 74749346 -74767691 + Lx7 LINE L1 6625 6738 -958 4 1155 3042 62 3 0 chr6 74749351 74749738 -74767299 - L1Md_F2 LINE L1 -2 6580 6193 4 1155 2422 69 22 0 chr6 74749740 74750059 -74766978 + L1Md_F2 LINE L1 5911 6236 -346 4 1155 246 324 18 9 chr6 74750042 74750154 -74766883 + Lx7 LINE L1 6725 6837 -859 4 1155 368 329 102 18 chr6 74750323 74750657 -74766380 + Lx8 LINE L1 7105 7466 -7 4 1155 3185 185 34 71 chr6 74750684 74751440 -74765597 - L1_Mur2 LINE L1 -2553 3324 2591 4 1155 2955 192 133 82 chr6 74751440 74752298 -74764739 - RMER19B LTR ERVK 0 902 1 4 1155 3185 185 34 71 chr6 74752298 74752373 -74764664 - L1_Mur2 LINE L1 -3287 2590 2524 4 1155 23 86 0 0 chr6 74752917 74752975 -74764062 + AT_rich Low_complexity Low_complexity 1 58 0 4 1155 432 346 134 23 chr6 74753458 74753674 -74763363 - B4A SINE B4 -16 276 37 4 1155 35 32 0 31 chr6 74753843 74753869 -74763168 + AT_rich Low_complexity Low_complexity 1 26 0 4 1155 1240 27 0 0 chr6 74753869 74754016 -74763021 - B1_Mus2 SINE Alu 0 147 1 4 1155 35 32 0 31 chr6 74754016 74754053 -74762984 + AT_rich Low_complexity Low_complexity 1 36 0 4 1155 498 344 91 13 chr6 74756383 74756701 -74760336 + Lx8 LINE L1 7131 7473 0 4 1155 704 67 105 0 chr6 74756829 74756934 -74760103 + B1_Mus1 SINE Alu 3 118 -30 4 1155 432 211 7 36 chr6 74757087 74757225 -74759812 + (CATATA)n Simple_repeat Simple_repeat 5 138 0 4 1155 447 337 53 24 chr6 74757398 74757605 -74759432 + B3 SINE B2 3 215 -1 4 1155 215 57 36 54 chr6 74757819 74757875 -74759162 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 4 1155 1128 75 7 7 chr6 74757877 74758024 -74759013 - B1_Mus2 SINE Alu 0 147 1 4 1155 976 277 77 20 chr6 74758192 74758542 -74758495 + ORR1D2 LTR MaLR 1 370 0 4 1155 321 335 59 7 chr6 74758753 74758906 -74758131 - Lx5 LINE L1 -7 7043 6883 4 1155 2440 189 107 69 chr6 74758915 74759637 -74757400 + RLTR22_Mur LTR ERVK 1 749 -1099 4 1155 268 83 117 0 chr6 74759720 74759780 -74757257 + RLTR22_Mur LTR ERVK 922 988 -860 4 1155 1325 69 0 0 chr6 74759801 74759974 -74757063 - L1_Mus1 LINE L1 0 6567 6395 4 1155 726 234 15 50 chr6 74760172 74760374 -74756663 + RLTR22_Mur LTR ERVK 1591 1785 -63 4 1155 2084 213 37 11 chr6 74760414 74760851 -74756186 - Lx4A LINE L1 -160 6898 6451 4 1155 1026 125 6 0 chr6 74760850 74761018 -74756019 + L1_Mur2 LINE L1 4584 4752 -1125 4 1155 1089 224 70 12 chr6 74761015 74761533 -74755504 - L1_Mur3 LINE L1 -4418 1459 863 4 1155 250 253 11 57 chr6 74762865 74762953 -74754084 + ID_B1 SINE B4 103 186 -38 4 1155 25 0 0 0 chr6 74763288 74763313 -74753724 + AT_rich Low_complexity Low_complexity 1 25 0 4 1155 926 140 20 0 chr6 74764538 74764688 -74752349 - B2_Mm2 SINE B2 -14 181 29 4 1155 2846 118 84 7 chr6 74764689 74765142 -74751895 - Lx2 LINE L1 0 6997 6510 4 1155 1307 163 5 0 chr6 74765142 74765357 -74751680 + Lx2 LINE L1 6290 6505 -492 4 1155 223 105 0 95 chr6 74765358 74765400 -74751637 - B3A SINE B2 -160 38 1 4 1155 3386 18 20 0 chr6 74766132 74766528 -74750509 - L1Md_F3 LINE L1 -15 6569 6166 4 1155 300 253 27 0 chr6 74766893 74766968 -74750069 - Lx8 LINE L1 -128 7345 7269 4 1155 423 286 18 18 chr6 74767032 74767146 -74749891 - RSINE1 SINE B4 -40 125 12 4 1155 1249 176 18 5 chr6 74767190 74767412 -74749625 + ORR1B1 LTR MaLR 166 390 -4 4 1155 446 154 213 0 chr6 74767414 74767550 -74749487 - ORR1D-int LTR MaLR -70 1300 1136 4 1155 1526 248 29 7 chr6 74767559 74767935 -74749102 - MTD LTR MaLR -14 393 24 4 1155 3775 89 4 37 chr6 74767963 74768509 -74748528 - L1_Mus2 LINE L1 0 6566 6039 4 1155 2369 152 60 14 chr6 74768687 74769133 -74747904 - Lx2 LINE L1 -1 6996 6530 4 1155 522 99 0 0 chr6 74769133 74769214 -74747823 - L1_Mur2 LINE L1 -1622 4255 4175 4 1155 669 162 190 0 chr6 74769226 74769368 -74747669 - ORR1B1 LTR MaLR -220 174 6 4 1155 433 275 28 42 chr6 74769344 74769487 -74747550 + B3 SINE B2 45 183 -10 4 1155 320 122 56 0 chr6 74769529 74769619 -74747418 + CT-rich Low_complexity Low_complexity 2 96 0 4 1155 657 129 190 14 chr6 74769961 74770103 -74746934 + Lx3C LINE L1 6809 6975 -1 4 1155 2940 112 128 18 chr6 74770520 74771028 -74746009 - LTRIS2 LTR ERV1 0 564 1 4 1155 251 191 16 0 chr6 74771272 74771335 -74745702 + GA-rich Low_complexity Low_complexity 4 67 0 4 1155 7130 18 6 0 chr6 74771667 74772489 -74744548 - L1Md_A LINE L1 0 6582 5756 4 1155 780 299 47 18 chr6 74772676 74772955 -74744082 + Lx9 LINE L1 6376 6662 -982 4 1155 614 13 13 0 chr6 74772999 74773074 -74743963 + (GAAA)n Simple_repeat Simple_repeat 4 79 0 4 1155 1219 224 38 93 chr6 74773676 74774021 -74743016 + ORR1B1 LTR MaLR 41 366 -28 4 1155 346 350 90 83 chr6 74774612 74774802 -74742235 + B4 SINE B4 2 184 -108 4 1155 372 22 0 0 chr6 74774802 74774847 -74742190 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1155 346 350 90 83 chr6 74774847 74774933 -74742104 + B4 SINE B4 185 280 -12 4 1155 222 37 0 0 chr6 74774954 74774981 -74742056 + (CATA)n Simple_repeat Simple_repeat 2 28 0 4 1155 215 231 0 19 chr6 74775206 74775259 -74741778 + (ATG)n Simple_repeat Simple_repeat 3 54 0 4 1155 238 287 55 39 chr6 74775615 74775742 -74741295 - RMER12 LTR ERVK -477 845 717 4 1155 248 200 22 22 chr6 74776231 74776323 -74740714 + (TATATG)n Simple_repeat Simple_repeat 1 92 0 4 1155 231 308 0 111 chr6 74776463 74776580 -74740457 - MLT1A0 LTR MaLR -261 104 1 4 1155 265 377 71 52 chr6 74777738 74777948 -74739089 + B3 SINE B2 2 215 -1 4 1155 287 274 60 97 chr6 74779074 74779223 -74737814 - Lx9 LINE L1 0 7644 7495 4 1155 224 100 25 0 chr6 74779223 74779263 -74737774 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1155 287 274 60 97 chr6 74779263 74779465 -74737572 - Lx9 LINE L1 -150 7494 7306 4 1155 2919 215 57 8 chr6 74779856 74780502 -74736535 + RMER6C LTR ERVK 11 688 -2 4 1155 218 106 21 0 chr6 74780686 74780733 -74736304 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 4 1155 434 18 18 0 chr6 74780809 74780864 -74736173 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1155 25 0 0 0 chr6 74780966 74780991 -74736046 + AT_rich Low_complexity Low_complexity 1 25 0 4 1155 357 117 0 0 chr6 74781018 74781078 -74735959 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1155 678 13 0 0 chr6 74781078 74781157 -74735880 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 4 1155 403 281 42 89 chr6 74783057 74783225 -74733812 + B4A SINE B4 62 221 -71 4 1155 863 135 8 0 chr6 74783096 74783229 -74733808 + B1_Mus1 SINE Alu 13 146 -2 4 1155 24 96 0 0 chr6 74783748 74783821 -74733216 + AT_rich Low_complexity Low_complexity 1 73 0 4 1155 408 366 0 30 chr6 74783849 74783984 -74733053 - RSINE1 SINE B4 -23 142 12 4 1155 228 149 0 0 chr6 74784706 74784753 -74732284 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1155 231 88 0 0 chr6 74785509 74785543 -74731494 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1155 320 287 0 0 chr6 74786036 74786123 -74730914 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 1155 232 191 24 0 chr6 74786932 74787016 -74730021 + GA-rich Low_complexity Low_complexity 2 87 0 4 1155 477 0 0 0 chr6 74787023 74787076 -74729961 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1155 232 227 0 76 chr6 74787112 74787189 -74729848 + T-rich Low_complexity Low_complexity 40 111 0 4 1155 289 326 55 28 chr6 74787189 74787334 -74729703 - B1_Mur1 SINE Alu 0 149 1 4 1155 232 227 0 76 chr6 74787334 74787375 -74729662 + T-rich Low_complexity Low_complexity 2 39 0 4 1155 7857 41 4 0 chr6 74787553 74788510 -74728527 - L1Md_F2 LINE L1 -12 6570 5610 4 1155 1059 109 6 22 chr6 74789508 74789686 -74727351 + Lx LINE L1 6471 6645 -9 4 1155 330 151 0 0 chr6 74790179 74790252 -74726785 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 4 1155 26 0 0 0 chr6 74790464 74790490 -74726547 + AT_rich Low_complexity Low_complexity 1 26 0 4 1155 832 154 55 12 chr6 74790492 74790656 -74726381 - Lx3C LINE L1 -3 6973 6803 4 1155 381 274 0 0 chr6 74790730 74790814 -74726223 - B4 SINE B4 -207 85 2 4 1155 1010 201 129 99 chr6 74791527 74791661 -74725376 + RLTR23 LTR ERV1 6 156 -274 4 1155 3332 123 85 4 chr6 74791661 74792191 -74724846 - Lx LINE L1 -1 6653 6081 4 1155 1010 201 129 99 chr6 74792191 74792235 -74724802 + RLTR23 LTR ERV1 157 195 -235 4 1155 483 130 0 0 chr6 74792235 74792312 -74724725 + (TCTG)n Simple_repeat Simple_repeat 4 80 0 4 1155 921 138 0 28 chr6 74792312 74792454 -74724583 - B1_Mus1 SINE Alu -9 139 2 4 1155 1010 201 129 99 chr6 74792454 74792638 -74724399 + RLTR23 LTR ERV1 196 380 -50 4 1155 396 0 0 0 chr6 74792640 74792684 -74724353 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1155 408 339 63 68 chr6 74793016 74793405 -74723632 - RLTR26 LTR ERVK -94 533 97 5 1155 24 32 0 0 chr6 74793496 74793527 -74723510 + AT_rich Low_complexity Low_complexity 1 31 0 5 1155 235 169 28 0 chr6 74793791 74793862 -74723175 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 1155 371 224 13 47 chr6 74793875 74794025 -74723012 + Lx9 LINE L1 7478 7622 -22 5 1155 2095 255 89 15 chr6 74795080 74795696 -74721341 - Lx9 LINE L1 -435 7209 6548 5 1155 949 223 33 12 chr6 74795702 74795798 -74721239 + Lx9 LINE L1 7212 7312 -332 5 1155 477 0 0 0 chr6 74795798 74795851 -74721186 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1155 468 0 0 0 chr6 74795852 74795904 -74721133 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1155 949 223 33 12 chr6 74795904 74796046 -74720991 + Lx9 LINE L1 7313 7457 -187 5 1155 351 0 0 0 chr6 74796050 74796089 -74720948 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1155 369 62 0 0 chr6 74796143 74796191 -74720846 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1155 2292 254 78 12 chr6 74796306 74796976 -74720061 + Lx7 LINE L1 6633 7346 -350 5 1155 272 321 12 0 chr6 74799138 74799219 -74717818 - ID4_ SINE ID -1 82 1 5 1155 486 0 0 0 chr6 74799940 74799994 -74717043 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1155 465 270 13 5 chr6 74800152 74800279 -74716758 + MTC LTR MaLR 1 132 -287 5 1155 2545 85 18 0 chr6 74800280 74800620 -74716417 - L1_Mm LINE L1 -30 5853 5508 5 1155 974 108 101 22 chr6 74800634 74800813 -74716224 + L1Md_F2 LINE L1 6390 6582 0 5 1155 518 246 403 5 chr6 74800822 74801042 -74715995 + MTC LTR MaLR 106 413 -8 5 1155 669 202 0 0 chr6 74801047 74801166 -74715871 - Lx9 LINE L1 -447 7197 7079 5 1155 331 237 0 0 chr6 74801269 74801345 -74715692 + L1Md_F LINE L1 458 533 -5986 5 1155 1307 181 174 0 chr6 74801341 74801617 -74715420 + L1MA6 LINE L1 306 629 -5987 5 1155 33308 71 10 11 chr6 74801615 74806296 -74710741 + L1MA6 LINE L1 928 5586 -297 5 1155 7454 67 15 1 chr6 74806296 74807276 -74709761 + L1Md_F2 LINE L1 5587 6580 -2 5 1155 33308 117 35 15 chr6 74807276 74807554 -74709483 + L1MA6 LINE L1 5587 5930 -370 5 1155 250 243 86 31 chr6 74807735 74807902 -74709135 - L1MA9 LINE L1 -114 6177 6010 5 1155 27 29 0 0 chr6 74807957 74807991 -74709046 + AT_rich Low_complexity Low_complexity 1 34 0 5 1155 233 287 45 18 chr6 74808139 74808249 -74708788 - L1MA9 LINE L1 -887 5253 5141 5 1155 417 282 8 16 chr6 74808553 74808679 -74708358 + RSINE1 SINE B4 12 136 -29 5 1155 22 35 0 0 chr6 74808700 74808729 -74708308 + AT_rich Low_complexity Low_complexity 1 29 0 5 1155 226 209 29 29 chr6 74808885 74808954 -74708083 - L1MA9 LINE L1 -1434 4706 4638 5 1155 231 274 172 39 chr6 74809016 74809377 -74707660 - L1MA9 LINE L1 -2401 3739 3331 5 1155 620 304 5 25 chr6 74809417 74809616 -74707421 - B3A SINE B2 0 198 4 5 1155 195 42 0 0 chr6 74810539 74810563 -74706474 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1155 947 262 47 50 chr6 74810707 74810984 -74706053 + MTD LTR MaLR 8 283 -136 5 1155 524 294 105 77 chr6 74812061 74812308 -74704729 + B4A SINE B4 18 271 -21 5 1155 206 339 0 0 chr6 74812327 74812389 -74704648 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1155 374 283 31 14 chr6 74812431 74812708 -74704329 + L1M2 LINE L1 5194 5471 -718 5 1155 233 67 16 62 chr6 74812821 74812885 -74704152 + (TTTTG)n Simple_repeat Simple_repeat 4 64 0 5 1155 1155 68 0 7 chr6 74812885 74813033 -74704004 - B1_Mm SINE Alu 0 147 1 5 1155 237 307 0 29 chr6 74813141 74813245 -74703792 + L1M2 LINE L1 5513 5613 -678 5 1155 415 317 71 26 chr6 74813217 74813525 -74703512 + Lx9 LINE L1 7103 7424 -220 5 1155 256 246 15 0 chr6 74813775 74813840 -74703197 + L1M2 LINE L1 5642 5707 -584 5 1155 228 250 28 56 chr6 74813971 74814043 -74702994 - MLT1L LTR MaLR -537 73 4 5 1155 3911 225 35 19 chr6 74814269 74815375 -74701662 + Lx6 LINE L1 2202 3325 -2555 5 1155 6565 215 70 74 chr6 74815359 74816474 -74700563 + Lx6 LINE L1 3796 4956 -2504 5 1155 712 100 2 2 chr6 74816474 74816587 -74700450 + B1_Mus1 SINE Alu 2 114 -35 5 1155 6565 215 70 74 chr6 74816587 74817915 -74699122 + Lx6 LINE L1 4957 6340 -1120 5 1155 2537 289 162 5 chr6 74818499 74819469 -74697568 + Lx6 LINE L1 6329 7450 -10 5 1155 25 0 0 0 chr6 74819502 74819527 -74697510 + AT_rich Low_complexity Low_complexity 1 25 0 5 1155 393 176 0 0 chr6 74819857 74819931 -74697106 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1155 671 319 39 0 chr6 74820100 74820282 -74696755 - B3A SINE B2 0 198 10 5 1155 23 0 0 0 chr6 74821596 74821619 -74695418 + AT_rich Low_complexity Low_complexity 1 23 0 5 1155 348 24 0 0 chr6 74822081 74822122 -74694915 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1155 438 20 0 0 chr6 74822122 74822172 -74694865 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1155 25 51 0 0 chr6 74822254 74822293 -74694744 + AT_rich Low_complexity Low_complexity 1 39 0 5 1155 23 33 0 0 chr6 74822327 74822357 -74694680 + AT_rich Low_complexity Low_complexity 1 30 0 5 1155 2123 113 28 3 chr6 74822447 74822774 -74694263 - IAPEY2_LTR LTR ERVK -3 354 20 5 1155 7224 129 9 11 chr6 74823357 74824992 -74692045 + Lx LINE L1 5009 6651 -3 5 1155 840 111 0 0 chr6 74825992 74826118 -74690919 + (TTTC)n Simple_repeat Simple_repeat 4 129 0 5 1155 624 320 98 25 chr6 74826412 74826556 -74690481 + Lx7 LINE L1 6690 6852 -621 5 1155 189 74 0 0 chr6 74826556 74826583 -74690454 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1155 624 308 86 27 chr6 74826583 74826831 -74690206 + Lx7 LINE L1 6842 7107 -589 5 1155 439 197 150 8 chr6 74827241 74827374 -74689663 - RMER6C LTR ERVK -287 403 252 5 1155 41 58 0 0 chr6 74827377 74827446 -74689591 + AT_rich Low_complexity Low_complexity 1 69 0 5 1155 192 125 0 0 chr6 74827478 74827510 -74689527 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1155 753 312 41 17 chr6 74827539 74827901 -74689136 - Lx9 LINE L1 -658 6986 6616 5 1155 728 255 106 43 chr6 74827926 74828078 -74688959 + L1_Rod LINE L1 3504 3659 -2188 5 1155 198 0 0 0 chr6 74828078 74828100 -74688937 + (CAA)n Simple_repeat Simple_repeat 3 24 0 5 1155 728 255 106 43 chr6 74828100 74828316 -74688721 + L1_Rod LINE L1 3660 3895 -1952 5 1155 306 250 0 0 chr6 74828299 74828391 -74688646 + Lx9 LINE L1 7530 7621 -23 5 1155 540 45 0 0 chr6 74828410 74828477 -74688560 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1155 1111 59 26 13 chr6 74828547 74828702 -74688335 + B2_Mm2 SINE B2 1 157 -38 5 1155 389 121 0 0 chr6 74828961 74829019 -74688018 - Lx3_Mus LINE L1 -266 5620 5563 5 1155 8676 112 19 14 chr6 74829016 74830359 -74686678 + Lx3_Mus LINE L1 5645 6993 -16 5 1155 23 0 0 0 chr6 74830362 74830385 -74686652 + AT_rich Low_complexity Low_complexity 1 23 0 5 1155 21 0 0 0 chr6 74831139 74831160 -74685877 + AT_rich Low_complexity Low_complexity 1 21 0 5 1155 253 253 38 12 chr6 74832209 74832289 -74684748 + L1MC3 LINE L1 6764 6845 -940 5 1155 34618 75 3 13 chr6 74832364 74838505 -74678532 - L1Md_F2 LINE L1 0 6582 511 5 1155 635 312 37 11 chr6 74838694 74838963 -74678074 - RMER15 LTR ERVL -30 545 270 5 1155 1021 297 58 22 chr6 74839139 74839501 -74677536 - MTEa LTR MaLR -3 376 2 5 1155 21 0 0 0 chr6 74839813 74839834 -74677203 + AT_rich Low_complexity Low_complexity 1 21 0 5 1155 322 333 40 7 chr6 74839954 74840102 -74676935 + Lx8 LINE L1 7265 7417 -56 5 1155 23 0 0 0 chr6 74840127 74840150 -74676887 + AT_rich Low_complexity Low_complexity 1 23 0 5 1155 534 143 0 0 chr6 74841187 74841278 -74675759 + (TATG)n Simple_repeat Simple_repeat 1 91 0 5 1155 325 331 29 43 chr6 74841671 74841810 -74675227 + L1M4c LINE L1 1620 1756 -4628 5 1155 22 0 0 0 chr6 74841952 74841974 -74675063 + AT_rich Low_complexity Low_complexity 1 22 0 5 144 390 326 86 31 chr6 74842095 74842645 -74674392 + L1M4c LINE L1 2508 3087 -3292 5 1156 284 305 95 53 chr6 74842747 74843439 -74673598 + L1M4c LINE L1 3089 3809 -2570 5 1156 1173 96 11 0 chr6 74843698 74843916 -74673121 + L1_Mus3 LINE L1 6458 6638 0 5 1156 267 93 0 0 chr6 74844172 74844215 -74672822 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 5 1156 362 321 97 40 chr6 74844316 74844543 -74672494 + RMER15 LTR ERVL 300 539 -36 5 1156 239 317 115 0 chr6 74844830 74844934 -74672103 - PB1D10 SINE Alu 0 117 2 5 1156 300 27 0 0 chr6 74845000 74845037 -74672000 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 5 1156 1116 95 0 0 chr6 74845037 74845184 -74671853 - B1_Mm SINE Alu 0 147 1 5 1156 245 127 25 25 chr6 74845696 74845777 -74671260 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 1156 21 71 0 0 chr6 74845784 74845826 -74671211 + AT_rich Low_complexity Low_complexity 1 42 0 5 1156 250 323 34 0 chr6 74846327 74846460 -74670577 + L1MA6 LINE L1 5857 5993 -307 5 1156 22 35 0 0 chr6 74846740 74846769 -74670268 + AT_rich Low_complexity Low_complexity 1 29 0 5 1156 377 288 0 75 chr6 74847311 74847431 -74669606 + RSINE1 SINE B4 55 165 0 5 1156 4257 140 15 0 chr6 74848258 74848943 -74668094 - Lx2 LINE L1 -315 6682 5988 5 1156 2625 156 31 50 chr6 74848949 74849470 -74667567 + L1_Mur2 LINE L1 4689 5199 -678 5 1156 435 70 16 0 chr6 74849502 74849572 -74667465 - Lx2 LINE L1 -812 5824 5754 5 1156 844 320 37 4 chr6 74851159 74851467 -74665570 + MTE2b LTR MaLR 28 345 -34 5 1156 236 369 0 0 chr6 74852321 74852424 -74664613 + CT-rich Low_complexity Low_complexity 1 103 0 5 1156 1368 282 24 84 chr6 74853615 74854161 -74662876 + RMER5 LTR ERV1 1 513 -21 5 1156 396 136 0 0 chr6 74854876 74854964 -74662073 + (A)n Simple_repeat Simple_repeat 1 88 0 5 1156 215 103 0 25 chr6 74855093 74855133 -74661904 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1156 563 242 10 4 chr6 74855425 74855565 -74661472 + MT2A LTR ERVL 348 525 -59 5 1156 512 278 209 5 chr6 74855568 74855774 -74661263 - Lx2B LINE L1 -5 6995 6748 5 1156 5218 195 14 10 chr6 74855779 74856800 -74660237 + L1_Mur2 LINE L1 4657 5681 -196 5 1156 321 78 20 0 chr6 74856811 74856862 -74660175 + MT2A LTR ERVL 482 533 0 5 1156 678 287 20 64 chr6 74856969 74857288 -74659749 - RLTR22_Mur LTR ERVK -181 1667 1413 5 1156 348 24 0 0 chr6 74857321 74857362 -74659675 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1156 646 181 0 52 chr6 74857367 74857501 -74659536 - RLTR22_Mur LTR ERVK -541 1307 1181 5 1156 4076 128 49 31 chr6 74857505 74858220 -74658817 + Lx LINE L1 5920 6647 -7 5 1156 24 67 0 0 chr6 74858379 74858424 -74658613 + AT_rich Low_complexity Low_complexity 1 45 0 5 1156 4234 88 0 2 chr6 74858475 74859042 -74657995 + L1_Mus3 LINE L1 5816 6381 -257 5 1156 222 62 0 0 chr6 74859042 74859074 -74657963 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1156 1399 88 5 0 chr6 74859077 74859271 -74657766 - L1_Mus1 LINE L1 -6 6561 6367 5 1156 809 86 25 25 chr6 74859415 74859657 -74657380 + (TAGA)n Simple_repeat Simple_repeat 1 242 0 5 1156 1392 167 11 11 chr6 74859679 74859946 -74657091 + RLTR31B_Mm LTR ERVK 1 267 -290 6 1156 1649 111 8 19 chr6 74859954 74860220 -74656817 + L1_Mus3 LINE L1 6374 6636 -2 5 1156 1606 284 50 108 chr6 74860223 74860919 -74656118 - RLTR22_Mur LTR ERVK -1192 656 1 6 1156 231 125 0 0 chr6 74861189 74861229 -74655808 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1156 435 368 81 37 chr6 74861679 74861950 -74655087 - MTEa LTR MaLR -3 376 94 6 1156 477 335 82 5 chr6 74862029 74862224 -74654813 + B3 SINE B2 1 210 -6 6 1156 738 244 22 11 chr6 74862398 74862580 -74654457 + B2_Mm2 SINE B2 2 185 -10 6 1156 231 36 0 0 chr6 74862887 74862915 -74654122 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 1156 21 0 0 0 chr6 74862932 74862953 -74654084 + AT_rich Low_complexity Low_complexity 1 21 0 6 1156 754 307 12 27 chr6 74863400 74863658 -74653379 - ORR1C2 LTR MaLR -8 376 123 6 1156 6208 180 10 6 chr6 74863658 74863856 -74653181 + Lx2 LINE L1 3971 4169 -1708 6 1156 3508 15 2 0 chr6 74863856 74864251 -74652786 + MTA_Mm LTR MaLR 1 396 0 6 1156 6208 180 10 6 chr6 74864251 74865267 -74651770 + Lx2 LINE L1 4170 5190 -687 6 1156 6293 141 6 6 chr6 74865264 74866516 -74650521 + Lx2 LINE L1 5337 6584 -413 6 1156 627 172 40 23 chr6 74866517 74866690 -74650347 + Lx LINE L1 6473 6648 -6 6 1156 588 273 97 0 chr6 74867172 74867326 -74649711 - B3 SINE B2 -42 174 6 6 1156 1024 58 57 7 chr6 74867559 74867699 -74649338 + B1_Mus2 SINE Alu 1 147 0 6 1156 265 59 39 19 chr6 74867703 74867755 -74649282 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 6 1156 890 358 18 24 chr6 74867762 74868100 -74648937 - MTE2b LTR MaLR -43 336 1 6 1156 1744 136 15 4 chr6 74868148 74868421 -74648616 + RLTR10E LTR ERVK 36 311 0 6 1156 3225 162 141 35 chr6 74868448 74869306 -74647731 + RLTR10-int LTR ERVK 44 992 -995 6 1156 302 304 70 28 chr6 74869336 74869478 -74647559 - Lx6 LINE L1 -158 7302 7155 6 1156 680 317 5 0 chr6 74869476 74869675 -74647362 + Lx5 LINE L1 6540 6739 -311 6 1156 716 219 26 21 chr6 74869706 74869897 -74647140 - RLTR22_Mus LTR ERVK -75 1733 1542 6 1156 2418 234 45 31 chr6 74869989 74870700 -74646337 - RLTR22_Mur LTR ERVK -925 923 203 6 1156 422 362 74 6 chr6 74870697 74870872 -74646165 - MTE2a-int LTR MaLR -439 1141 955 6 1156 225 178 0 0 chr6 74870904 74870949 -74646088 + T-rich Low_complexity Low_complexity 1 45 0 6 1156 701 355 65 30 chr6 74871026 74871397 -74645640 - MTE2a-int LTR MaLR -692 888 505 6 1156 988 329 48 43 chr6 74871364 74871758 -74645279 - MTE2a-int LTR MaLR -1181 399 4 6 1156 1029 314 62 53 chr6 74871760 74872134 -74644903 - MTE2a LTR MaLR -2 377 1 6 1156 1312 57 91 0 chr6 74872214 74872390 -74644647 + B2_Mm2 SINE B2 2 193 -2 6 1156 351 0 0 0 chr6 74872470 74872509 -74644528 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1156 344 22 22 0 chr6 74872509 74872553 -74644484 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1156 2197 147 32 0 chr6 74872937 74873277 -74643760 + Lx3B LINE L1 6547 6897 -76 6 1156 361 339 30 79 chr6 74873849 74874153 -74642884 - B4 SINE B4 -2 290 2 6 1156 434 241 0 100 chr6 74874178 74874298 -74642739 + MT2B LTR ERVL 157 264 -337 6 1156 1051 71 0 0 chr6 74874192 74874323 -74642714 + B1_Mm SINE Alu 7 137 -10 6 1156 477 0 0 0 chr6 74874323 74874376 -74642661 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 6 1156 33 25 0 0 chr6 74874537 74874577 -74642460 + AT_rich Low_complexity Low_complexity 1 40 0 6 1156 2013 196 23 18 chr6 74874703 74875144 -74641893 + Lx4B LINE L1 5711 6153 -905 6 1156 12178 70 12 3 chr6 74875139 74876806 -74640231 - L1Md_F2 LINE L1 -654 5928 4246 6 1156 4804 79 2 3 chr6 74876806 74877442 -74639595 + L1Md_F2 LINE L1 5936 6570 -12 6 1156 1863 221 132 12 chr6 74877450 74877959 -74639078 + Lx4B LINE L1 6160 6729 -329 6 1156 211 26 24 73 chr6 74878042 74878083 -74638954 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 6 1156 1081 82 0 26 chr6 74878086 74878237 -74638800 - B1_Mus1 SINE Alu 0 148 2 6 1156 429 314 170 33 chr6 74878788 74879094 -74637943 - MTD LTR MaLR -42 377 30 6 1156 4193 108 6 11 chr6 74879163 74879827 -74637210 - L1_Mm LINE L1 -2073 3810 3150 6 1156 783 118 19 13 chr6 74879829 74879983 -74637054 + L1_Mus3 LINE L1 6484 6638 0 6 1156 195 204 0 0 chr6 74881371 74881420 -74635617 + GA-rich Low_complexity Low_complexity 2 50 0 6 1156 439 327 12 0 chr6 74881642 74881804 -74635233 - RMER15 LTR ERVL -40 535 372 6 1156 423 0 0 0 chr6 74881962 74882009 -74635028 + (A)n Simple_repeat Simple_repeat 1 47 0 6 1156 5387 130 6 11 chr6 74882087 74882927 -74634110 - Lx LINE L1 0 6654 5819 6 1156 4142 184 27 20 chr6 74882927 74884096 -74632941 - L1VL2 LINE L1 -2435 1180 134 6 1156 27026 82 36 35 chr6 74884462 74888294 -74628743 + L1Md_A LINE L1 403 4192 -1691 6 1156 378 0 0 0 chr6 74888294 74888336 -74628701 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1156 306 0 0 0 chr6 74888336 74888369 -74628668 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1156 14889 62 72 59 chr6 74888369 74888977 -74628060 + L1Md_A LINE L1 4193 4879 -1004 6 1156 228 260 46 37 chr6 74888977 74889085 -74627952 - MER72B LTR ERV1 -381 387 279 6 1156 14889 62 72 59 chr6 74889085 74889707 -74627330 + L1Md_A LINE L1 4880 5585 -298 6 1156 8188 43 1 4 chr6 74889708 74890707 -74626330 + L1Md_F3 LINE L1 5588 6583 -1 6 1156 661 219 39 14 chr6 74891134 74891342 -74625695 - Lx9 LINE L1 -1 7643 7431 6 1156 439 333 29 86 chr6 74892551 74892761 -74624276 - B3A SINE B2 0 198 1 6 1156 243 0 0 0 chr6 74893113 74893140 -74623897 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 1156 218 56 0 27 chr6 74893260 74893297 -74623740 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 6 1156 2736 143 13 9 chr6 74893334 74893800 -74623237 - Lx LINE L1 -8 6646 6179 6 1156 660 223 14 0 chr6 74894045 74894184 -74622853 + B1_Mur4 SINE Alu 1 141 -9 6 1156 3126 56 2 8 chr6 74894187 74894581 -74622456 - MTA_Mm LTR MaLR 0 396 5 6 1156 498 33 0 0 chr6 74894612 74894672 -74622365 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1156 7713 157 20 53 chr6 74895043 74896606 -74620431 + L1VL4 LINE L1 185 1696 -1863 6 1156 231 36 0 0 chr6 74896606 74896634 -74620403 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1156 7713 112 9 19 chr6 74896634 74897060 -74619977 + L1VL4 LINE L1 1697 2109 -1450 6 1156 6529 118 30 20 chr6 74897064 74898094 -74618943 + L1_Mus3 LINE L1 5599 6638 0 6 1156 25 0 0 0 chr6 74898127 74898152 -74618885 + AT_rich Low_complexity Low_complexity 1 25 0 6 1156 481 328 83 21 chr6 74898601 74898841 -74618196 - MTD LTR MaLR -97 322 68 6 1156 21 95 0 0 chr6 74899217 74899280 -74617757 + AT_rich Low_complexity Low_complexity 1 63 0 6 1156 609 61 0 0 chr6 74899385 74899467 -74617570 + (GA)n Simple_repeat Simple_repeat 1 82 0 6 1156 3702 155 33 37 chr6 74899477 74900233 -74616804 - L1_Mur2 LINE L1 -891 4986 4234 6 1156 2181 219 91 5 chr6 74900257 74900808 -74616229 + Lx3C LINE L1 5896 6493 -483 6 1156 1301 260 36 6 chr6 74900807 74901136 -74615901 + Lx3C LINE L1 6602 6940 -36 6 1156 38 51 0 0 chr6 74901156 74901215 -74615822 + AT_rich Low_complexity Low_complexity 1 59 0 6 1156 4557 54 36 5 chr6 74902745 74903325 -74613712 + L1_Mus1 LINE L1 5970 6567 0 6 1156 1073 95 0 26 chr6 74903531 74903683 -74613354 + B1_Mus1 SINE Alu 1 148 0 6 1156 326 58 14 55 chr6 74903685 74903758 -74613279 + (CAAAAA)n Simple_repeat Simple_repeat 2 71 0 6 1156 368 234 0 13 chr6 74905502 74905580 -74611457 - ID4_ SINE ID -4 79 3 6 1156 244 316 19 32 chr6 74905922 74906045 -74610992 + B1F1 SINE Alu 20 147 -2 6 1156 36 40 0 0 chr6 74907214 74907264 -74609773 + AT_rich Low_complexity Low_complexity 1 50 0 6 1156 315 354 11 43 chr6 74907281 74907467 -74609570 + B3A SINE B2 1 180 -18 6 1156 330 26 0 0 chr6 74908082 74908121 -74608916 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1156 351 0 0 0 chr6 74908121 74908159 -74608878 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1156 2191 267 52 31 chr6 74908190 74908897 -74608140 - Lx7 LINE L1 -2 7694 6973 6 1156 759 233 48 161 chr6 74908896 74909275 -74607762 - L1_Mur3 LINE L1 -12 5868 5533 6 1156 822 353 14 17 chr6 74909379 74909725 -74607312 - Lx6 LINE L1 -22 7438 7094 6 1156 2684 192 27 32 chr6 74909725 74910349 -74606688 + L1_Mur3 LINE L1 4060 4680 -1200 6 1156 1646 208 15 0 chr6 74910705 74911047 -74605990 + L1_Mur3 LINE L1 4675 5021 -859 6 1156 346 182 0 0 chr6 74911046 74911112 -74605925 + Lx2B LINE L1 6260 6325 -675 6 1156 2921 74 2 5 chr6 74911112 74911506 -74605531 - MTB LTR MaLR 0 400 8 6 1156 2840 220 16 45 chr6 74911522 74912203 -74604834 + Lx2B LINE L1 6326 6986 -14 6 1156 414 0 0 0 chr6 74912254 74912300 -74604737 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1156 489 175 0 19 chr6 74912300 74912395 -74604642 - L1_Mur3 LINE L1 -1255 4625 4533 6 1156 394 310 162 8 chr6 74912419 74912666 -74604371 - L1MB7 LINE L1 -148 6036 5752 6 1156 377 308 97 28 chr6 74912722 74912939 -74604098 - L1MB7 LINE L1 -518 5666 5435 6 1156 195 129 0 0 chr6 74914642 74914673 -74602364 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 1156 21 0 0 0 chr6 74915183 74915204 -74601833 + AT_rich Low_complexity Low_complexity 1 21 0 6 1156 429 109 0 0 chr6 74915366 74915430 -74601607 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1156 210 263 0 0 chr6 74916038 74916095 -74600942 + A-rich Low_complexity Low_complexity 1 57 0 6 1156 305 53 0 17 chr6 74916971 74917029 -74600008 - L1_Mus4 LINE L1 -1 6635 6579 6 1156 836 98 33 0 chr6 74917032 74917154 -74599883 + Lx LINE L1 6351 6476 -178 6 1156 429 20 0 0 chr6 74917413 74917463 -74599574 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1156 2419 130 91 0 chr6 74917544 74917960 -74599077 - Lx3C LINE L1 -786 6190 5737 6 1156 4694 126 34 28 chr6 74917963 74918738 -74598299 + Lx3C LINE L1 6192 6970 -6 6 1156 431 78 0 15 chr6 74918786 74918851 -74598186 + (TTA)n Simple_repeat Simple_repeat 3 66 0 6 1156 2465 189 48 30 chr6 74918851 74919337 -74597700 - Lx4A LINE L1 -11 7047 6552 6 1156 261 0 0 0 chr6 74919485 74919514 -74597523 + (TA)n Simple_repeat Simple_repeat 2 30 0 6 1156 441 0 0 0 chr6 74919514 74919562 -74597475 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1156 246 422 9 4 chr6 74919790 74920021 -74597016 - Lx8 LINE L1 -254 7219 6988 6 1156 1275 240 50 28 chr6 74920027 74920348 -74596689 + ORR1D1 LTR MaLR 47 374 0 6 1156 328 88 35 0 chr6 74920633 74920690 -74596347 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1156 1817 213 28 171 chr6 74920714 74921321 -74595716 - RMER19C LTR ERVK -89 522 3 7 1156 366 23 0 0 chr6 74921420 74921463 -74595574 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 1156 276 30 0 0 chr6 74921463 74921495 -74595542 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 1156 262 324 28 0 chr6 74921524 74921595 -74595442 - RSINE1 SINE B4 -11 154 82 7 1156 32 26 0 0 chr6 74922235 74922274 -74594763 + AT_rich Low_complexity Low_complexity 1 39 0 7 1156 575 273 115 60 chr6 74922763 74923032 -74594005 + Lx8 LINE L1 7186 7469 -4 7 1156 285 323 90 55 chr6 74923068 74923268 -74593769 + MLT1A1 LTR MaLR 174 380 -28 7 1156 3416 248 36 17 chr6 74923721 74924566 -74592471 - RMER1B Other Other -9 1057 1 7 1156 38 22 0 0 chr6 74924876 74924921 -74592116 + AT_rich Low_complexity Low_complexity 1 45 0 7 1156 451 335 28 45 chr6 74925315 74925493 -74591544 - B3 SINE B2 -26 190 16 7 1156 6863 171 34 28 chr6 74926160 74926529 -74590508 + L1_Mur2 LINE L1 3546 3924 -1953 7 1156 2007 127 80 19 chr6 74926529 74926891 -74590146 + Lx2 LINE L1 6612 6995 -2 7 1156 6863 171 34 28 chr6 74926891 74927602 -74589435 + L1_Mur2 LINE L1 3925 4637 -1240 7 1156 284 0 28 0 chr6 74927602 74927638 -74589399 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1156 6863 171 34 28 chr6 74927638 74927989 -74589048 + L1_Mur2 LINE L1 4638 4986 -891 7 1156 520 311 72 12 chr6 74928190 74928356 -74588681 + B3A SINE B2 5 180 -18 7 1156 5606 91 42 4 chr6 74929711 74930547 -74586490 - L1_Mus4 LINE L1 -4 6632 5765 7 1156 25 31 0 0 chr6 74930915 74930947 -74586090 + AT_rich Low_complexity Low_complexity 1 32 0 7 1156 23 33 0 0 chr6 74931037 74931067 -74585970 + AT_rich Low_complexity Low_complexity 1 30 0 7 1156 22 0 0 0 chr6 74931105 74931127 -74585910 + AT_rich Low_complexity Low_complexity 1 22 0 7 1156 1015 97 0 0 chr6 74931154 74931288 -74585749 + B1_Mus2 SINE Alu 2 135 -12 7 1156 2544 96 0 17 chr6 74931313 74931672 -74585365 - L1_Mus2 LINE L1 0 6566 6214 7 1156 301 297 50 42 chr6 74931732 74931971 -74585066 - L1M2 LINE L1 -1750 4393 4153 7 1156 365 293 29 80 chr6 74932177 74932408 -74584629 - L1M2 LINE L1 -2262 3884 3665 7 1156 337 331 55 81 chr6 74932503 74932921 -74584116 - L1M2 LINE L1 -2451 3692 3286 7 1156 227 315 44 30 chr6 74932975 74933178 -74583859 - L1M2 LINE L1 -2929 3214 3009 7 1156 25 0 0 0 chr6 74933179 74933204 -74583833 + AT_rich Low_complexity Low_complexity 1 25 0 7 1156 4831 203 74 10 chr6 74933204 74934422 -74582615 - Lx4A LINE L1 0 7058 5741 7 1156 1269 57 6 6 chr6 74934424 74934601 -74582436 - L1Md_F3 LINE L1 -2 6582 6406 7 1156 2912 35 0 0 chr6 74934601 74934944 -74582093 + L1_Mm LINE L1 5366 5708 -175 7 1156 2133 141 59 16 chr6 74934942 74935316 -74581721 - L1_Mur2 LINE L1 -136 5741 5352 7 1156 2058 234 22 4 chr6 74935328 74935784 -74581253 - Lx3C LINE L1 -2 6974 6511 7 1156 2038 112 13 0 chr6 74935788 74936100 -74580937 - L1_Mur2 LINE L1 -549 5328 5013 7 1156 247 121 35 0 chr6 74936938 74936996 -74580041 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 1156 993 118 7 0 chr6 74936996 74937140 -74579897 - B1_Mus1 SINE Alu -3 145 1 7 1156 32 26 0 0 chr6 74937277 74937316 -74579721 + AT_rich Low_complexity Low_complexity 1 39 0 7 1156 195 42 0 0 chr6 74937325 74937349 -74579688 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 1156 435 38 0 0 chr6 74937990 74938043 -74578994 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1156 25 0 0 0 chr6 74938931 74938956 -74578081 + AT_rich Low_complexity Low_complexity 1 25 0 7 1156 7682 90 8 2 chr6 74938970 74940194 -74576843 + L1_Mus3 LINE L1 5399 6631 -7 7 1156 753 319 110 39 chr6 74940664 74941339 -74575698 + L1MA9 LINE L1 5346 6068 -244 7 1156 279 0 0 0 chr6 74942328 74942359 -74574678 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1156 204 67 0 0 chr6 74942581 74942611 -74574426 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 7 1156 2511 219 40 68 chr6 74942611 74943248 -74573789 - Lx4B LINE L1 -17 7041 6422 7 1156 285 276 94 10 chr6 74943277 74943478 -74573559 - L1MA7 LINE L1 -364 5927 5710 7 1156 858 47 0 0 chr6 74943742 74943849 -74573188 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 7 1156 612 153 0 0 chr6 74943849 74943944 -74573093 + CT-rich Low_complexity Low_complexity 20 114 0 7 1156 1155 117 0 0 chr6 74943944 74944124 -74572913 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1156 612 153 0 0 chr6 74944124 74944139 -74572898 + polypyrimidine Low_complexity Low_complexity 5 19 0 7 1156 5038 112 69 15 chr6 74944150 74944318 -74572719 - Lx LINE L1 -16 6638 6463 7 1156 2050 134 47 83 chr6 74944318 74944726 -74572311 - RLTR9C LTR ERVK 0 393 1 7 1156 5038 112 69 15 chr6 74944726 74945371 -74571666 - Lx LINE L1 -192 6462 5781 7 1156 35 0 0 0 chr6 74945660 74945695 -74571342 + AT_rich Low_complexity Low_complexity 1 35 0 7 1156 398 53 18 0 chr6 74945765 74945822 -74571215 + (CAAG)n Simple_repeat Simple_repeat 2 59 0 7 1156 500 291 21 4 chr6 74945936 74946099 -74570938 - B3 SINE B2 -30 168 2 7 1156 644 234 10 71 chr6 74946244 74946442 -74570595 - Lx9 LINE L1 -447 7197 7012 7 1156 189 0 0 0 chr6 74946461 74946482 -74570555 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1156 276 30 0 0 chr6 74946864 74946897 -74570140 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1156 5281 48 3 0 chr6 74947114 74947767 -74569270 - L1Md_F2 LINE L1 -12 6570 5916 7 1156 27 0 0 0 chr6 74947885 74947912 -74569125 + AT_rich Low_complexity Low_complexity 1 27 0 7 1156 259 255 81 10 chr6 74948083 74948182 -74568855 - Lx7 LINE L1 -1 7695 7590 7 1156 23 68 0 0 chr6 74948186 74948230 -74568807 + AT_rich Low_complexity Low_complexity 1 44 0 7 1156 3731 28 5 2 chr6 74948350 74948785 -74568252 + RLTR10C LTR ERVK 1 436 0 7 1156 1488 44 0 0 chr6 74948785 74948965 -74568072 + MMERVK10C-int LTR ERVK 1 180 -7401 7 1156 242 191 0 0 chr6 74948965 74949007 -74568030 + RLTR27 LTR ERVK 231 272 -37 7 1156 420 0 0 0 chr6 74949007 74949053 -74567984 + MMERVK10C-int LTR ERVK 222 267 -7314 7 1156 323 141 22 45 chr6 74949135 74949224 -74567813 + A-rich Low_complexity Low_complexity 3 89 0 7 1156 355 67 0 0 chr6 74949224 74949269 -74567768 + RLTR10-int LTR ERVK 93 137 -6405 7 1156 1957 13 9 4 chr6 74949272 74949505 -74567532 + RLTR10-int LTR ERVK 652 885 -1102 7 1156 1804 47 0 4 chr6 74949474 74949707 -74567330 + MMERVK10C-int LTR ERVK 3512 3743 -3838 7 1156 8761 36 0 0 chr6 74949700 74950721 -74566316 + MMERVK10C-int LTR ERVK 4790 5810 -1771 7 1156 8007 41 0 0 chr6 74950707 74951643 -74565394 + MMERVK10C-int LTR ERVK 6646 7581 0 7 1156 3718 30 5 2 chr6 74951643 74952078 -74564959 + RLTR10C LTR ERVK 1 436 0 7 1156 301 375 0 0 chr6 74952117 74952213 -74564824 + Lx8 LINE L1 7113 7208 -265 7 1156 2418 106 88 2 chr6 74952215 74952612 -74564425 + Lx3A LINE L1 6549 6979 -2 7 1156 9529 21 15 0 chr6 74952958 74954399 -74562638 - L1Md_T LINE L1 -373 6209 4747 7 1156 279 268 89 44 chr6 74954564 74954744 -74562293 + L1M4 LINE L1 4179 4366 -1780 7 1156 1062 96 7 0 chr6 74954759 74954905 -74562132 + B1_Mus2 SINE Alu 1 147 0 7 1156 21 0 0 0 chr6 74955847 74955868 -74561169 + AT_rich Low_complexity Low_complexity 1 21 0 7 1156 1110 277 113 14 chr6 74955869 74956356 -74560681 - Lx9 LINE L1 -1 7643 7109 7 1156 378 0 0 0 chr6 74956403 74956445 -74560592 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1156 186 191 0 0 chr6 74956445 74956487 -74560550 + (CG)n Simple_repeat Simple_repeat 1 42 0 7 1156 243 0 0 0 chr6 74956658 74956685 -74560352 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1156 2423 96 9 0 chr6 74957092 74957436 -74559601 - L1_Mus1 LINE L1 -2 6565 6219 7 1156 1560 118 0 0 chr6 74957436 74957664 -74559373 + L1Md_F2 LINE L1 6066 6293 -289 7 1156 517 207 36 0 chr6 74959074 74959185 -74557852 + MTC LTR MaLR 1 115 -306 7 1156 441 0 0 0 chr6 74959185 74959234 -74557803 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1156 886 232 0 0 chr6 74959275 74959452 -74557585 + MTC LTR MaLR 106 282 -139 7 1156 25 51 0 0 chr6 74959494 74959533 -74557504 + AT_rich Low_complexity Low_complexity 1 39 0 7 1156 182 91 30 0 chr6 74959566 74959599 -74557438 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1156 228 154 0 0 chr6 74959596 74959648 -74557389 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 7 1156 279 79 0 0 chr6 74959721 74959759 -74557278 + (GGA)n Simple_repeat Simple_repeat 3 40 0 7 1156 387 52 0 0 chr6 74959956 74960014 -74557023 + L1_Mus3 LINE L1 6573 6630 -8 7 1156 41115 6 0 1 chr6 74961064 74967232 -74549805 - L1Md_A LINE L1 0 6582 422 7 1156 501 208 179 17 chr6 74967312 74967547 -74549490 - RLTR42-int LTR ERVK -3380 2142 1870 7 1156 1527 191 81 55 chr6 74967619 74968039 -74548998 - RLTR42-int LTR ERVK -3994 1528 1098 7 1156 594 0 0 0 chr6 74968295 74968361 -74548676 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 1156 346 200 0 41 chr6 74969448 74969521 -74547516 + L1MA5 LINE L1 5852 5921 -379 7 1156 180 77 0 0 chr6 74969537 74969563 -74547474 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1156 195 42 0 0 chr6 74969587 74969611 -74547426 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1156 23 33 0 0 chr6 74970973 74971003 -74546034 + AT_rich Low_complexity Low_complexity 1 30 0 7 1156 2559 272 39 28 chr6 74971513 74972314 -74544723 - Lx6 LINE L1 -923 6537 5728 7 1156 257 387 22 7 chr6 74972314 74972452 -74544585 - MTD LTR MaLR -277 142 3 7 1156 616 345 69 25 chr6 74972461 74972868 -74544169 - Lx8 LINE L1 -526 6947 6523 7 1157 1453 281 76 9 chr6 74973754 74974155 -74542882 + Lx9 LINE L1 6382 6812 -832 7 1157 5088 30 0 0 chr6 74974155 74974749 -74542288 + L1Md_T LINE L1 5989 6582 0 7 1157 1453 281 76 9 chr6 74974749 74974781 -74542256 + Lx9 LINE L1 6813 6844 -800 7 1157 1336 281 67 35 chr6 74974899 74975463 -74541574 + L1_Mur3 LINE L1 4938 5519 -361 7 1157 605 245 65 0 chr6 74976974 74977113 -74539924 - Lx9 LINE L1 -824 6820 6673 7 1157 1258 205 84 33 chr6 74977137 74977500 -74539537 - Lx2B LINE L1 -80 6920 6244 7 1157 1387 164 0 9 chr6 74977479 74977700 -74539337 + Lx4A LINE L1 6731 6949 -109 7 1157 186 133 0 0 chr6 74977716 74977746 -74539291 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1157 404 129 0 0 chr6 74977780 74977842 -74539195 + Lx2B LINE L1 5938 5999 -1001 7 1157 428 284 8 25 chr6 74977832 74977951 -74539086 + Lx4A LINE L1 6941 7057 -1 7 1157 2859 253 150 10 chr6 74977963 74978858 -74538179 - Lx4B LINE L1 -17 7041 6022 7 1157 2201 162 35 1 chr6 74978870 74979412 -74537625 + Lx4B LINE L1 5439 6006 -1052 7 1157 345 356 7 0 chr6 74979491 74979626 -74537411 + ID_B1 SINE B4 89 224 0 8 1157 327 96 0 0 chr6 74979678 74979730 -74537307 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 8 1157 1637 26 0 5 chr6 74980919 74981110 -74535927 + B2_Mm1a SINE B2 1 190 -3 8 1157 251 259 47 0 chr6 74981342 74981427 -74535610 - L1M1 LINE L1 -453 5847 5759 8 1157 453 334 48 12 chr6 74981586 74981787 -74535250 - B3A SINE B2 -1 215 4 8 1157 3634 162 23 5 chr6 74981811 74982455 -74534582 + Lx2B LINE L1 6340 6995 -5 8 1157 422 336 7 42 chr6 74983772 74983915 -74533122 + ID_B1 SINE B4 87 224 0 8 1157 22 56 0 0 chr6 74985011 74985047 -74531990 + AT_rich Low_complexity Low_complexity 1 36 0 8 1157 696 12 0 0 chr6 74985869 74985950 -74531087 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 1157 273 29 0 0 chr6 74986813 74986847 -74530190 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1157 3517 149 52 47 chr6 74986942 74987967 -74529070 + RLTR13D1 LTR ERVK 1 965 -58 8 1157 348 300 15 8 chr6 74987995 74988126 -74528911 - Lx9 LINE L1 -772 6872 6741 8 1157 497 30 15 0 chr6 74988205 74988272 -74528765 + (TC)n Simple_repeat Simple_repeat 1 68 0 8 1157 1988 135 3 0 chr6 74988616 74988905 -74528132 - L1_Mus3 LINE L1 -191 6447 6158 8 1157 1022 144 11 11 chr6 74988905 74989087 -74527950 + L1_Mus3 LINE L1 6456 6637 -1 8 1157 1760 100 23 4 chr6 74989445 74989706 -74527331 + Lx3_Mus LINE L1 6719 6984 -25 8 1157 654 13 0 0 chr6 74989712 74989787 -74527250 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 8 1157 732 321 41 65 chr6 74990321 74990855 -74526182 + L1M4c LINE L1 305 825 -5559 8 1157 1155 75 0 0 chr6 74991734 74991881 -74525156 - B1_Mus2 SINE Alu 0 147 1 8 1157 26 64 0 0 chr6 74992971 74993018 -74524019 + AT_rich Low_complexity Low_complexity 1 47 0 8 1157 861 81 0 0 chr6 74993715 74993838 -74523199 + (TG)n Simple_repeat Simple_repeat 1 123 0 8 1157 188 265 69 46 chr6 74994330 74994417 -74522620 - L3 LINE CR1 -907 3582 3494 8 1157 2187 298 40 40 chr6 74994512 74995316 -74521721 - Lx8 LINE L1 -541 6932 6129 8 1157 2151 209 112 42 chr6 74996181 74996751 -74520286 + Lx4B LINE L1 6432 7041 -17 8 1157 290 26 26 0 chr6 74996754 74996793 -74520244 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 8 1157 318 89 0 0 chr6 74998433 74998489 -74518548 + Lx LINE L1 6592 6647 -7 8 1157 32 43 0 0 chr6 74999169 74999215 -74517822 + AT_rich Low_complexity Low_complexity 1 46 0 8 1157 1070 254 104 0 chr6 75000896 75001176 -74515861 - RMER15 LTR ERVL -68 507 199 1 1157 265 219 6 250 chr6 75001193 75001357 -74515680 - RMER15 LTR ERVL -451 124 1 1 1157 1565 268 88 37 chr6 75001376 75002163 -74514874 + Lx7 LINE L1 6870 7696 0 2 1157 255 61 0 0 chr6 75003138 75003171 -74513866 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1157 282 329 12 0 chr6 75003201 75003286 -74513751 - B1F SINE Alu -26 123 38 4 1157 3360 46 94 2 chr6 75003799 75004234 -74512803 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1157 6827 41 4 11 chr6 75004234 75005069 -74511968 - IAPEz-int LTR ERVK 0 6481 5653 5 1157 2692 61 0 3 chr6 75005064 75005407 -74511630 - IAPEz-int LTR ERVK -4781 1700 1359 5 1157 3690 56 26 18 chr6 75005407 75005898 -74511139 - IAPEz-int LTR ERVK -5819 662 168 5 1157 236 321 0 0 chr6 75005898 75005951 -74511086 - RLTR27 LTR ERVK -34 275 223 6 1157 1128 108 10 80 chr6 75005951 75006152 -74510885 - IAPEz-int LTR ERVK -6286 195 9 5 1157 3345 46 94 2 chr6 75006153 75006588 -74510449 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1157 21 0 0 0 chr6 75006666 75006687 -74510350 + AT_rich Low_complexity Low_complexity 1 21 0 7 1157 5356 157 46 122 chr6 75006808 75008848 -74508189 - L1_Mus4 LINE L1 -86 6550 4646 8 1157 210 59 18 73 chr6 75008997 75009052 -74507985 + (TTTTTA)n Simple_repeat Simple_repeat 2 53 0 9 1157 40300 12 3 6 chr6 75009055 75015405 -74501632 - L1Md_A LINE L1 -1 6581 253 1 1157 1374 177 20 42 chr6 75016040 75016346 -74500691 - Lx2B LINE L1 -1 6999 6701 1 1157 642 215 237 48 chr6 75016636 75016885 -74500152 + Lx4B LINE L1 6763 7058 0 1 1157 554 255 63 6 chr6 75016945 75017103 -74499934 + B3 SINE B2 50 216 0 1 1157 309 225 14 0 chr6 75017160 75017231 -74499806 + Lx5 LINE L1 6968 7039 -11 1 1157 567 0 0 0 chr6 75017332 75017395 -74499642 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1157 360 348 17 57 chr6 75017406 75017585 -74499452 - B3A SINE B2 -13 203 32 1 1157 31 99 0 0 chr6 75018072 75018173 -74498864 + AT_rich Low_complexity Low_complexity 1 101 0 1 1157 311 234 17 51 chr6 75018173 75018290 -74498747 - Lx9 LINE L1 -15 7629 7517 1 1157 430 295 32 32 chr6 75019022 75019148 -74497889 - MLT1B LTR MaLR 0 390 265 1 1157 387 0 0 0 chr6 75019636 75019679 -74497358 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1157 294 327 19 9 chr6 75019855 75019963 -74497074 + Lx4B LINE L1 6943 7051 -7 2 1157 615 78 0 0 chr6 75020128 75020218 -74496819 + (CA)n Simple_repeat Simple_repeat 1 90 0 2 1157 27 0 0 0 chr6 75020223 75020250 -74496787 + AT_rich Low_complexity Low_complexity 1 27 0 2 1157 24 32 0 0 chr6 75020339 75020370 -74496667 + AT_rich Low_complexity Low_complexity 1 31 0 2 1157 620 274 0 0 chr6 75021520 75021666 -74495371 + B1_Mur3 SINE Alu 2 147 -2 2 1157 506 374 6 0 chr6 75022875 75023046 -74493991 - B3A SINE B2 -24 174 3 2 1157 2436 129 15 19 chr6 75023345 75023756 -74493281 + RLTR9E LTR ERVK 1 409 0 2 1157 26 0 0 0 chr6 75023999 75024025 -74493012 + AT_rich Low_complexity Low_complexity 1 26 0 2 1157 358 301 137 22 chr6 75024044 75024592 -74492445 - L1MA4 LINE L1 -365 5935 5320 2 1157 560 159 0 42 chr6 75025184 75025302 -74491735 + Lx LINE L1 6516 6628 -26 3 1157 3565 117 4 4 chr6 75025303 75026000 -74491037 - L1_Mus3 LINE L1 -615 6023 5327 3 1157 3358 114 12 62 chr6 75026000 75026597 -74490440 + L1_Mus3 LINE L1 6064 6630 -8 3 1157 24 53 0 0 chr6 75026598 75026636 -74490401 + AT_rich Low_complexity Low_complexity 1 38 0 3 1157 221 241 17 0 chr6 75026862 75026920 -74490117 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1157 488 342 0 32 chr6 75027000 75027154 -74489883 - B4A SINE B4 -61 231 83 3 1157 32445 80 3 17 chr6 75027814 75032963 -74484074 + L1Md_F2 LINE L1 511 5585 -298 3 1157 7775 64 0 0 chr6 75032964 75033948 -74483089 + L1Md_F2 LINE L1 5587 6570 -12 3 1157 225 139 0 0 chr6 75034169 75034212 -74482825 + (CAGAGA)n Simple_repeat Simple_repeat 3 45 0 3 1157 189 0 0 0 chr6 75034672 75034693 -74482344 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1157 283 311 41 32 chr6 75034742 75034865 -74482172 + RSINE1 SINE B4 4 127 -38 3 1157 1779 188 23 28 chr6 75034889 75035277 -74481760 + RLTR17 LTR ERVK 1 386 -306 3 1157 905 98 8 8 chr6 75035277 75035410 -74481627 + Lx3A LINE L1 6501 6633 -348 4 1157 1406 138 35 43 chr6 75035410 75035667 -74481370 - MTB_Mm LTR MaLR -152 255 1 4 1157 743 110 8 8 chr6 75035668 75035796 -74481241 + L1_Mur1 LINE L1 1224 1351 -4535 4 1157 26 0 0 0 chr6 75036769 75036795 -74480242 + AT_rich Low_complexity Low_complexity 1 26 0 4 1157 720 35 0 0 chr6 75036923 75037010 -74480027 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 1157 5154 133 18 2 chr6 75037769 75038596 -74478441 - Lx3A LINE L1 -4 6977 6138 4 1157 283 281 120 21 chr6 75038919 75039061 -74477976 + MTD LTR MaLR 82 237 -182 4 1157 441 0 0 0 chr6 75040380 75040429 -74476608 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1157 265 279 30 42 chr6 75040535 75040700 -74476337 - L1M3 LINE L1 -1073 5067 4905 4 1157 259 250 0 0 chr6 75040758 75040818 -74476219 - L1M3 LINE L1 -1388 4755 4696 4 1157 219 69 0 0 chr6 75041785 75041814 -74475223 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 4 1157 713 356 30 28 chr6 75041819 75042180 -74474857 - Lx8 LINE L1 -148 7325 6964 5 1157 804 62 0 0 chr6 75042569 75042724 -74474313 + L1_Mus1 LINE L1 6456 6567 0 5 1157 1009 214 1 1 chr6 75043143 75043336 -74473701 + Lx5 LINE L1 6195 6375 -675 5 1157 508 331 23 40 chr6 75043629 75044057 -74472980 + L1_Rod LINE L1 4790 5210 -637 5 1157 1854 323 79 49 chr6 75044148 75045375 -74471662 + Lx9 LINE L1 6156 7419 -225 5 1157 333 0 0 0 chr6 75045398 75045435 -74471602 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1157 435 130 10 20 chr6 75045435 75045537 -74471500 + GA-rich Low_complexity Low_complexity 2 102 0 5 1157 24 32 0 0 chr6 75045658 75045689 -74471348 + AT_rich Low_complexity Low_complexity 1 31 0 5 1157 5539 209 72 24 chr6 75045992 75046488 -74470549 + L1_Mur2 LINE L1 882 1396 -4484 5 1157 360 0 0 0 chr6 75046488 75046528 -74470509 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1157 5539 230 181 94 chr6 75046528 75046777 -74470260 + L1_Mur2 LINE L1 1397 1661 -4219 5 1157 354 23 0 0 chr6 75046777 75046820 -74470217 + (TAA)n Simple_repeat Simple_repeat 3 45 0 6 1157 5545 210 132 54 chr6 75046820 75049672 -74467365 + L1_Mur2 LINE L1 1662 4785 -1092 5 1157 1015 252 85 28 chr6 75049705 75050023 -74467014 + Lx5 LINE L1 6709 7044 -6 5 1157 708 12 0 0 chr6 75050354 75050435 -74466602 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1157 306 0 0 0 chr6 75050435 75050468 -74466569 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1157 266 376 70 74 chr6 75050550 75050820 -74466217 - B4A SINE B4 -18 274 6 6 1157 25 0 0 0 chr6 75050919 75050944 -74466093 + AT_rich Low_complexity Low_complexity 1 25 0 6 1157 382 385 53 0 chr6 75050964 75051133 -74465904 + B3A SINE B2 3 180 -18 6 1157 384 195 58 0 chr6 75051176 75051263 -74465774 + HAL1-3A_ME LINE L1 1974 2065 -793 6 1157 1195 253 9 28 chr6 75051617 75051938 -74465099 + Lx6 LINE L1 6796 7110 -350 6 1157 3455 157 10 5 chr6 75052373 75052969 -74464068 - Lx2 LINE L1 0 6997 6399 6 1157 4547 16 0 4 chr6 75053168 75053689 -74463348 + L1Md_T LINE L1 6064 6582 0 6 1157 216 86 0 0 chr6 75053702 75053737 -74463300 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1157 21 36 0 0 chr6 75054493 75054521 -74462516 + AT_rich Low_complexity Low_complexity 1 28 0 7 1157 229 311 13 13 chr6 75054593 75054668 -74462369 + B4 SINE B4 10 84 -208 7 1157 343 0 43 0 chr6 75054738 75054785 -74462252 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1157 586 0 27 0 chr6 75054810 75054884 -74462153 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 7 1157 212 229 48 16 chr6 75055101 75055225 -74461812 + (TAGA)n Simple_repeat Simple_repeat 4 131 0 7 1157 364 233 54 14 chr6 75055266 75055414 -74461623 + (TAGA)n Simple_repeat Simple_repeat 2 155 0 7 1157 289 212 68 12 chr6 75055453 75055615 -74461422 + (TAGA)n Simple_repeat Simple_repeat 3 173 0 7 1157 22899 138 68 14 chr6 75055649 75061304 -74455733 - L1_Mus3 LINE L1 0 6638 648 7 1157 192 185 0 0 chr6 75061372 75061426 -74455611 + A-rich Low_complexity Low_complexity 1 54 0 7 1157 3972 30 0 0 chr6 75062090 75062553 -74454484 + L1Md_T LINE L1 6120 6582 0 7 1157 288 70 0 0 chr6 75062655 75062698 -74454339 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 7 1157 456 57 84 9 chr6 75062790 75062897 -74454140 + (TTTTG)n Simple_repeat Simple_repeat 3 117 0 8 1157 7094 89 26 0 chr6 75063076 75064151 -74452886 - L1_Mus1 LINE L1 0 6567 5524 8 1157 244 341 31 51 chr6 75064528 75064723 -74452314 - RLTR21 LTR ERVK -297 1275 1085 8 1157 348 64 0 0 chr6 75064778 75064825 -74452212 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1157 31 68 0 0 chr6 75065473 75065532 -74451505 + AT_rich Low_complexity Low_complexity 1 59 0 8 1157 25 51 0 0 chr6 75065642 75065681 -74451356 + AT_rich Low_complexity Low_complexity 1 39 0 8 1157 862 318 20 43 chr6 75066046 75066579 -74450458 - Lx7 LINE L1 -16 7680 7028 8 1157 24 32 0 0 chr6 75067586 75067617 -74449420 + AT_rich Low_complexity Low_complexity 1 31 0 8 1157 379 20 0 0 chr6 75067623 75067674 -74449363 - L1_Mus1 LINE L1 -1 6566 6516 8 1157 263 309 0 21 chr6 75068224 75068320 -74448717 - Lx7 LINE L1 -30 7666 7573 8 1157 305 276 91 10 chr6 75068330 75068429 -74448608 - Lx5 LINE L1 -393 6657 6551 9 1157 261 332 119 0 chr6 75068431 75068591 -74448446 - Lx7 LINE L1 -851 6845 6673 8 1157 3276 94 40 0 chr6 75068578 75069050 -74447987 + L1Md_F2 LINE L1 5719 6193 -389 9 1157 731 248 78 23 chr6 75069047 75069157 -74447880 - Lx6 LINE L1 -801 6659 6541 9 1157 198 0 0 0 chr6 75069157 75069179 -74447858 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 9 1157 731 248 78 23 chr6 75069179 75069287 -74447750 - Lx6 LINE L1 -920 6540 6431 9 1157 1529 278 14 41 chr6 75069291 75069853 -74447184 - Lx7 LINE L1 -1387 6309 5763 9 1157 4630 180 9 3 chr6 75069849 75071129 -74445908 + Lx3C LINE L1 5197 6484 -492 9 1157 8197 46 91 3 chr6 75071122 75072845 -74444192 - L1Md_F2 LINE L1 0 6582 4708 9 1157 1591 236 69 22 chr6 75072841 75073249 -74443788 + Lx3C LINE L1 6547 6973 -3 9 1157 612 142 24 0 chr6 75073577 75073704 -74443333 - L1_Mus3 LINE L1 -5 6633 6504 9 1157 5675 104 6 15 chr6 75073704 75074864 -74442173 + L1_Mus3 LINE L1 5269 6417 -221 9 1157 213 225 25 0 chr6 75075332 75075372 -74441665 - B3A SINE B2 -155 43 3 9 1157 24 0 0 0 chr6 75075381 75075405 -74441632 + AT_rich Low_complexity Low_complexity 1 24 0 9 1157 331 294 0 34 chr6 75076119 75076207 -74440830 - PB1D10 SINE Alu -10 107 23 1 1157 316 280 132 39 chr6 75077496 75077678 -74439359 + B3 SINE B2 2 200 -16 1 1157 276 274 57 15 chr6 75078394 75078536 -74438501 + Lx7 LINE L1 7409 7539 -157 1 1157 214 171 0 0 chr6 75078545 75078580 -74438457 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 1 1157 278 296 25 0 chr6 75078626 75078707 -74438330 + Lx7 LINE L1 7212 7294 -402 1 1157 236 257 0 0 chr6 75078718 75078792 -74438245 + T-rich Low_complexity Low_complexity 1 74 0 1 1157 29 47 0 0 chr6 75078951 75078994 -74438043 + AT_rich Low_complexity Low_complexity 1 43 0 1 1157 325 328 141 11 chr6 75079059 75079244 -74437793 - B3 SINE B2 -4 212 4 1 1157 309 198 0 0 chr6 75079498 75079584 -74437453 + GA-rich Low_complexity Low_complexity 2 87 0 1 1157 851 281 92 26 chr6 75079621 75079968 -74437069 + ORR1D1 LTR MaLR 5 374 0 1 1157 222 37 0 0 chr6 75080387 75080414 -74436623 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1157 32412 80 2 11 chr6 75080855 75082235 -74434802 - L1Md_F2 LINE L1 0 6582 5230 1 1157 459 0 0 0 chr6 75082235 75082286 -74434751 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1157 32412 111 15 23 chr6 75082286 75087307 -74429730 - L1Md_F2 LINE L1 -654 5229 238 1 1157 1070 95 0 0 chr6 75087331 75087479 -74429558 - Lx3A LINE L1 -723 5163 5016 1 1157 8744 125 23 13 chr6 75087479 75088300 -74428737 + Lx3A LINE L1 5225 6042 -939 1 1157 672 48 0 0 chr6 75088300 75088384 -74428653 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 1 1157 8744 120 35 11 chr6 75088384 75089291 -74427746 + Lx3A LINE L1 6043 6978 -3 1 1157 756 335 56 19 chr6 75089794 75090171 -74426866 + RMER5 LTR ERV1 47 437 -97 1 1157 655 259 215 6 chr6 75090710 75091036 -74426001 + RMER6C LTR ERVK 210 603 -87 1 1157 242 167 21 0 chr6 75091023 75091071 -74425966 - MTE2b LTR MaLR -98 281 233 1 1157 304 136 119 0 chr6 75091097 75091156 -74425881 - MTE2b LTR MaLR -313 66 1 1 1157 27 23 0 22 chr6 75091304 75091322 -74425715 + AT_rich Low_complexity Low_complexity 1 18 0 1 1157 1094 66 0 0 chr6 75091322 75091459 -74425578 + B1_Mus1 SINE Alu 2 138 -10 1 1157 27 23 0 22 chr6 75091459 75091485 -74425552 + AT_rich Low_complexity Low_complexity 1 26 0 1 1157 28 0 0 0 chr6 75091777 75091805 -74425232 + AT_rich Low_complexity Low_complexity 1 28 0 1 1157 321 200 25 0 chr6 75091807 75091887 -74425150 - L1Md_F2 LINE L1 0 6582 6501 1 1157 414 0 0 0 chr6 75091889 75091935 -74425102 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1157 299 181 14 0 chr6 75092054 75092126 -74424911 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1157 693 209 0 0 chr6 75092289 75092442 -74424595 + GA-rich Low_complexity Low_complexity 2 154 0 1 1157 607 294 108 0 chr6 75093966 75094160 -74422877 + B3 SINE B2 2 216 0 1 1157 230 0 33 0 chr6 75094578 75094608 -74422429 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1157 186 43 0 0 chr6 75094967 75094990 -74422047 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1 1157 2857 294 96 11 chr6 75094993 75095955 -74421082 - Lx6 LINE L1 -15 7445 6403 1 1157 4727 185 46 81 chr6 75095977 75097110 -74419927 + RLTR25A LTR ERVK 1 1093 -10 1 1157 1786 234 83 36 chr6 75097112 75097615 -74419422 - Lx6 LINE L1 -1101 6359 5836 1 1157 378 0 0 0 chr6 75097615 75097657 -74419380 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1157 1786 234 83 36 chr6 75097657 75097742 -74419295 - Lx6 LINE L1 -1625 5835 5745 1 1157 4357 216 68 11 chr6 75097733 75097776 -74419261 + L1_Mus1 LINE L1 4705 4747 -1133 1 1157 597 64 0 0 chr6 75097776 75097854 -74419183 + (GAAAA)n Simple_repeat Simple_repeat 2 79 0 1 1157 4357 216 68 11 chr6 75097854 75098612 -74418425 + L1_Mus1 LINE L1 4748 5572 -308 1 1157 423 0 0 0 chr6 75098612 75098659 -74418378 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1157 4357 216 68 11 chr6 75098659 75098670 -74418367 + L1_Mus1 LINE L1 5573 5582 -298 1 1157 4226 65 0 0 chr6 75098670 75099196 -74417841 - L1_Mus1 LINE L1 -1 6566 6041 1 1157 4357 42 0 0 chr6 75099196 75099670 -74417367 + L1_Mus1 LINE L1 5583 6060 -507 1 1157 484 257 0 17 chr6 75099654 75099769 -74417268 + L1_Mur3 LINE L1 5477 5589 -291 1 1157 1259 194 7 57 chr6 75099800 75100079 -74416958 - RMER6D LTR ERVK -4 716 452 1 1157 2804 78 10 5 chr6 75100079 75100465 -74416572 - L1Md_F2 LINE L1 0 6582 6195 1 1157 3158 62 0 0 chr6 75100465 75100865 -74416172 + L1Md_F2 LINE L1 5789 6188 -394 1 1157 414 311 9 21 chr6 75101696 75101826 -74415211 + B1_Mur1 SINE Alu 1 125 -22 1 1157 7087 45 2 3 chr6 75101845 75102717 -74414320 + L1Md_F2 LINE L1 5701 6571 -11 1 1157 1171 68 0 0 chr6 75104066 75104213 -74412824 + B1_Mm SINE Alu 1 147 0 1 1158 665 302 0 6 chr6 75104846 75105029 -74412008 - Lx7 LINE L1 -291 7405 7224 1 1158 486 0 0 0 chr6 75105032 75105086 -74411951 + (TTA)n Simple_repeat Simple_repeat 2 55 0 1 1158 28 29 0 0 chr6 75105634 75105669 -74411368 + AT_rich Low_complexity Low_complexity 1 35 0 1 1158 2338 234 12 39 chr6 75106353 75106925 -74410112 - Lx2B LINE L1 0 7000 6444 1 1158 3505 175 43 19 chr6 75106925 75107600 -74409437 + RLTR17 LTR ERVK 2 692 0 1 1158 1953 170 25 0 chr6 75107600 75107978 -74409059 - Lx2B LINE L1 -715 6285 5899 1 1158 180 135 0 0 chr6 75108127 75108164 -74408873 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1158 362 296 0 18 chr6 75108943 75109053 -74407984 + Lx8 LINE L1 6289 6396 -1077 1 1158 709 43 270 0 chr6 75109814 75109929 -74407108 - B1_Mus2 SINE Alu -1 146 1 1 1158 700 314 112 27 chr6 75109929 75110169 -74406868 - ORR1D2 LTR MaLR -3 367 100 1 1158 1297 229 39 22 chr6 75110169 75110530 -74406507 + ORR1B2 LTR MaLR 1 367 0 1 1158 700 314 112 27 chr6 75110530 75110620 -74406417 - ORR1D2 LTR MaLR -271 99 9 1 1158 23 68 0 0 chr6 75110674 75110718 -74406319 + AT_rich Low_complexity Low_complexity 1 44 0 1 1158 666 323 69 17 chr6 75111073 75111397 -74405640 + ORR1D1 LTR MaLR 1 360 -14 1 1158 538 261 9 0 chr6 75111652 75111763 -74405274 + Tigger7 DNA MER2_type 59 170 -2321 1 1158 242 306 30 10 chr6 75111849 75111948 -74405089 + Tigger7 DNA MER2_type 2131 2231 -260 1 1158 2739 25 0 0 chr6 75111948 75112272 -74404765 - L1_Mm LINE L1 -1322 4561 4238 1 1158 313 362 55 10 chr6 75112272 75112473 -74404564 - RMER15 LTR ERVL -5 570 361 1 1158 11503 82 21 1 chr6 75112473 75114089 -74402948 - L1_Mm LINE L1 -851 5032 3385 1 1158 4041 81 2 2 chr6 75114090 75114635 -74402402 + L1_Mm LINE L1 5044 5617 -557 1 1158 7033 99 1 21 chr6 75114635 75115637 -74401400 + L1Md_F2 LINE L1 5589 6582 0 1 1158 1102 288 12 5 chr6 75115637 75115676 -74401361 + L1_Mm LINE L1 5618 5660 -514 1 1158 323 137 0 0 chr6 75116880 75116931 -74400106 + HAL1-3A_ME LINE L1 1976 2026 -832 1 1158 332 0 47 0 chr6 75116957 75117000 -74400037 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 1158 24 0 0 0 chr6 75117272 75117296 -74399741 + AT_rich Low_complexity Low_complexity 1 24 0 1 1158 11104 90 45 50 chr6 75117466 75120317 -74396720 - Lx3_Mus LINE L1 0 7009 4197 1 1158 2646 172 54 6 chr6 75120348 75120845 -74396192 + Lx2B LINE L1 6310 6830 -170 1 1158 2647 242 62 51 chr6 75120858 75121619 -74395418 + RLTR40 LTR ERVK 49 817 0 1 1158 483 375 85 57 chr6 75123231 75123584 -74393453 - MTD LTR MaLR -41 378 16 1 1158 231 146 0 0 chr6 75124390 75124431 -74392606 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1 1158 257 79 61 45 chr6 75124536 75124602 -74392435 + A-rich Low_complexity Low_complexity 4 70 0 1 1158 196 375 26 18 chr6 75124790 75124904 -74392133 + L2a LINE L2 3304 3418 -8 1 1158 36 23 0 0 chr6 75126105 75126148 -74390889 + AT_rich Low_complexity Low_complexity 1 43 0 1 1158 479 246 123 62 chr6 75126148 75126343 -74390694 - B3 SINE B2 -5 211 5 1 1158 321 47 0 0 chr6 75127592 75127635 -74389402 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1158 225 0 0 0 chr6 75127635 75127659 -74389378 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1158 23 33 0 0 chr6 75127712 75127742 -74389295 + AT_rich Low_complexity Low_complexity 1 30 0 1 1158 294 29 0 0 chr6 75129202 75129237 -74387800 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1158 393 58 0 0 chr6 75129297 75129349 -74387688 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1158 615 329 96 76 chr6 75129957 75130260 -74386777 + MTEa LTR MaLR 15 323 -56 1 1158 271 274 24 12 chr6 75130261 75130346 -74386691 + CT-rich Low_complexity Low_complexity 2 87 0 1 1158 1319 61 0 16 chr6 75130348 75130473 -74386564 + (TTTCC)n Simple_repeat Simple_repeat 1 125 0 1 1158 1292 72 0 11 chr6 75130473 75130655 -74386382 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1158 1319 61 0 16 chr6 75130655 75130712 -74386325 + (TTTCC)n Simple_repeat Simple_repeat 1 55 0 1 1158 561 138 12 40 chr6 75130703 75131000 -74386037 + CT-rich Low_complexity Low_complexity 1 288 0 1 1158 3626 218 49 26 chr6 75131039 75131684 -74385353 - RMER19B LTR ERVK 0 902 241 1 1158 393 22 0 0 chr6 75131684 75131730 -74385307 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1158 3626 218 49 26 chr6 75131730 75131886 -74385151 - RMER19B LTR ERVK -662 240 84 1 1158 295 17 0 92 chr6 75131887 75131952 -74385085 + (GGGGA)n Simple_repeat Simple_repeat 1 59 0 1 1158 2389 107 5 21 chr6 75131976 75132349 -74384688 + L1_Mus3 LINE L1 6270 6636 -2 1 1158 340 143 25 25 chr6 75133703 75133782 -74383255 + G-rich Low_complexity Low_complexity 2 80 0 1 1158 23 0 0 0 chr6 75134210 75134233 -74382804 + AT_rich Low_complexity Low_complexity 1 23 0 1 1158 368 255 41 31 chr6 75134367 75134464 -74382573 - RMER20B LTR ERVK -25 602 505 1 1158 568 223 15 30 chr6 75134474 75134608 -74382429 - Lx5 LINE L1 -271 6779 6648 1 1158 23 33 0 0 chr6 75134662 75134692 -74382345 + AT_rich Low_complexity Low_complexity 1 30 0 1 1158 361 341 44 15 chr6 75134933 75135070 -74381967 - B3A SINE B2 -48 150 10 1 1158 2212 108 9 0 chr6 75135334 75135650 -74381387 + ORR1A2 LTR MaLR 1 319 -8 1 1158 254 286 3 57 chr6 75136252 75136376 -74380661 + PB1D10 SINE Alu 1 120 0 1 1158 306 0 0 0 chr6 75136419 75136453 -74380584 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1158 226 208 38 0 chr6 75137041 75137094 -74379943 + CT-rich Low_complexity Low_complexity 3 57 0 1 1158 492 347 14 0 chr6 75139009 75139156 -74377881 - RSINE1 SINE B4 -2 163 15 1 1158 4004 42 2 0 chr6 75139541 75140015 -74377022 + MT2C_Mm LTR ERVL 1 475 0 1 1158 1619 304 30 39 chr6 75140994 75141830 -74375207 + Lx7 LINE L1 584 1415 -4465 1 1158 1261 210 83 70 chr6 75141850 75142146 -74374891 + Lx7 LINE L1 1819 2110 -3770 1 1158 315 0 0 0 chr6 75142146 75142181 -74374856 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1158 1144 51 0 0 chr6 75142181 75142319 -74374718 - B1_Mus2 SINE Alu -9 138 1 1 1158 1261 210 83 70 chr6 75142319 75142539 -74374498 + Lx7 LINE L1 2111 2342 -3538 1 1158 4287 264 69 122 chr6 75142543 75142973 -74374064 + Lx7 LINE L1 2638 3050 -2830 1 1158 1005 206 18 9 chr6 75142973 75143193 -74373844 - URR1A DNA MER1_type 0 226 5 2 1158 4287 264 69 122 chr6 75143193 75145962 -74371075 + Lx7 LINE L1 3051 5668 -212 1 1158 703 249 11 44 chr6 75145977 75146158 -74370879 + Lx7 LINE L1 6231 6405 -1291 1 1158 442 258 81 55 chr6 75146216 75146561 -74370476 + Lx7 LINE L1 7343 7696 0 1 1158 1176 271 37 72 chr6 75146725 75147130 -74369907 + MTD LTR MaLR 1 391 -28 2 1158 198 0 0 0 chr6 75147132 75147154 -74369883 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1158 790 242 114 27 chr6 75147561 75147824 -74369213 - RMER13A LTR ERVK -392 468 183 2 1158 406 310 0 0 chr6 75147819 75147935 -74369102 + B3 SINE B2 101 216 0 2 1158 7380 101 11 0 chr6 75147937 75149134 -74367903 - L1_Mus2 LINE L1 -589 5977 4763 2 1158 2683 223 115 16 chr6 75149134 75149843 -74367194 - RMER19B LTR ERVK -184 718 1 2 1158 307 224 30 10 chr6 75150005 75150104 -74366933 + Lx9 LINE L1 7544 7644 0 2 1158 29 28 0 0 chr6 75150106 75150142 -74366895 + AT_rich Low_complexity Low_complexity 1 36 0 2 1158 730 305 9 14 chr6 75150147 75150360 -74366677 + B3 SINE B2 1 212 -4 2 1158 516 32 0 0 chr6 75151383 75151445 -74365592 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1158 196 87 20 61 chr6 75151448 75151497 -74365540 + A-rich Low_complexity Low_complexity 5 51 0 2 1158 326 264 65 11 chr6 75151509 75151601 -74365436 - B3A SINE B2 -94 99 3 2 1158 25 31 0 0 chr6 75151690 75151722 -74365315 + AT_rich Low_complexity Low_complexity 1 32 0 2 1158 2145 79 3 3 chr6 75153015 75153308 -74363729 - L1_Mus2 LINE L1 0 6566 6274 2 1158 1798 37 0 0 chr6 75153317 75153534 -74363503 - L1Md_T LINE L1 0 6582 6366 2 1158 6496 26 0 0 chr6 75153534 75154494 -74362543 + L1Md_T LINE L1 5392 6351 -231 2 1158 44 63 0 0 chr6 75154522 75154601 -74362436 + AT_rich Low_complexity Low_complexity 1 79 0 2 1158 232 212 64 56 chr6 75154607 75154732 -74362305 + Lx9 LINE L1 7518 7643 -1 2 1158 439 350 6 19 chr6 75155146 75155306 -74361731 + B3A SINE B2 21 178 -20 2 1158 22 35 0 0 chr6 75155306 75155335 -74361702 + AT_rich Low_complexity Low_complexity 1 29 0 2 1158 1441 207 72 55 chr6 75155356 75155848 -74361189 - RMER6A LTR ERVK 0 720 306 2 1158 248 370 40 0 chr6 75155867 75155967 -74361070 + PB1D7 SINE Alu 9 112 -8 2 1158 2197 296 56 41 chr6 75156024 75156882 -74360155 + Lx8 LINE L1 6467 7337 -136 2 1158 720 300 28 5 chr6 75157228 75157439 -74359598 + MTEb LTR MaLR 36 251 -128 2 1158 413 357 20 33 chr6 75157899 75158059 -74358978 - B3A SINE B2 -57 159 3 2 1158 870 126 0 54 chr6 75158484 75158652 -74358385 - L1Md_F2 LINE L1 -1 6581 6423 2 1158 531 0 0 0 chr6 75159105 75159164 -74357873 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 2 1158 462 18 0 0 chr6 75159434 75159489 -74357548 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1158 246 164 0 0 chr6 75159489 75159544 -74357493 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1158 320 143 43 87 chr6 75159544 75159613 -74357424 - HAL1-3A_ME LINE L1 -817 2041 1976 2 1158 276 200 0 0 chr6 75159613 75159693 -74357344 + (TG)n Simple_repeat Simple_repeat 2 81 0 2 1158 317 354 176 25 chr6 75159717 75160001 -74357036 + MLT1A LTR MaLR 15 341 -33 2 1158 21 36 0 0 chr6 75161088 75161116 -74355921 + AT_rich Low_complexity Low_complexity 1 28 0 2 1158 237 333 0 0 chr6 75162660 75162720 -74354317 + RSINE1 SINE B4 94 153 -12 2 1158 419 0 20 0 chr6 75162730 75162781 -74354256 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1158 204 143 0 23 chr6 75163375 75163418 -74353619 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 2 1158 2556 172 119 62 chr6 75163504 75164082 -74352955 - RMER19C LTR ERVK 0 611 1 2 1158 183 42 0 0 chr6 75164644 75164668 -74352369 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1158 247 65 0 42 chr6 75164774 75164822 -74352215 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1158 569 288 32 55 chr6 75164994 75165214 -74351823 + B3 SINE B2 2 216 0 2 1158 319 41 41 0 chr6 75166156 75166205 -74350832 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 2 1158 1560 26 47 0 chr6 75167241 75167434 -74349603 - L1Md_F3 LINE L1 -14 6570 6369 2 1158 468 35 0 0 chr6 75167465 75167523 -74349514 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1158 500 375 42 31 chr6 75167568 75167829 -74349208 - B4A SINE B4 -26 266 3 2 1158 207 0 0 0 chr6 75167843 75167866 -74349171 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1158 855 133 0 0 chr6 75168075 75168210 -74348827 - L1_Mur1 LINE L1 -461 5425 5291 2 1158 34242 72 9 5 chr6 75168207 75174056 -74342981 - L1Md_F3 LINE L1 -14 6570 698 2 1158 3050 108 0 162 chr6 75174055 75174498 -74342539 - L1_Mur1 LINE L1 -742 5144 4731 2 1158 467 89 0 15 chr6 75174498 75174566 -74342471 - B1_Mus2 SINE Alu -1 146 80 2 1158 3050 108 0 162 chr6 75174566 75174697 -74342340 - L1_Mur1 LINE L1 -742 4730 4607 2 1158 648 88 0 0 chr6 75174697 75174788 -74342249 - L1_Mur1 LINE L1 -1183 4703 4613 2 1158 744 154 0 0 chr6 75174800 75174923 -74342114 - L1_Mur1 LINE L1 -1629 4257 4135 2 1158 361 344 30 15 chr6 75175028 75175161 -74341876 - Lx8 LINE L1 -183 7290 7156 2 1158 250 326 73 10 chr6 75175183 75175279 -74341758 + U6 snRNA snRNA 1 102 -5 2 1158 372 175 20 10 chr6 75175855 75175953 -74341084 + (TA)n Simple_repeat Simple_repeat 1 99 0 2 1158 14017 99 29 9 chr6 75176173 75178987 -74338050 + L1Md_F LINE L1 387 3257 -2626 2 1158 13281 109 22 16 chr6 75178989 75181630 -74335407 - Lx3_Mus LINE L1 -545 6464 3808 2 1158 2814 19 0 0 chr6 75181630 75181952 -74335085 - RLTRETN_Mm LTR ERVK 0 322 1 2 1158 13281 115 16 21 chr6 75181952 75182006 -74335031 - Lx3_Mus LINE L1 -2079 3807 3756 2 1158 1525 109 9 0 chr6 75182007 75182227 -74334810 - L1_Mm LINE L1 -299 5584 5363 2 1158 3274 117 77 6 chr6 75182229 75182778 -74334259 + L1_Mus4 LINE L1 6043 6630 -6 2 1158 185 65 0 31 chr6 75182810 75182842 -74334195 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1158 1707 145 24 0 chr6 75183172 75183461 -74333576 + Lx3B LINE L1 6672 6967 -6 2 1158 477 0 0 0 chr6 75183469 75183522 -74333515 + (TAA)n Simple_repeat Simple_repeat 2 54 0 2 1158 1035 152 0 0 chr6 75183819 75183997 -74333040 + GA-rich Low_complexity Low_complexity 3 180 0 2 1158 237 326 0 10 chr6 75184992 75185088 -74331949 + GA-rich Low_complexity Low_complexity 1 95 0 2 1158 28 48 0 0 chr6 75185646 75185688 -74331349 + AT_rich Low_complexity Low_complexity 1 42 0 2 1158 25 65 0 0 chr6 75185842 75185888 -74331149 + AT_rich Low_complexity Low_complexity 1 46 0 2 1158 2273 293 71 9 chr6 75186357 75187173 -74329864 - Lx6 LINE L1 -567 6893 6027 2 1158 328 253 23 0 chr6 75187233 75187320 -74329717 - Lx6 LINE L1 -1511 5949 5861 2 1158 191 22 130 0 chr6 75187324 75187370 -74329667 + T-rich Low_complexity Low_complexity 4 55 0 2 1158 6852 128 27 40 chr6 75187416 75188625 -74328412 - Lx3A LINE L1 -6 6975 5783 2 1158 5066 146 22 9 chr6 75188652 75189512 -74327525 - Lx LINE L1 -3 6651 5781 2 1158 1406 90 0 0 chr6 75189523 75189711 -74327326 - L1_Mus1 LINE L1 -1 6566 6379 2 1158 518 108 36 12 chr6 75189690 75189774 -74327263 - Lx LINE L1 -871 5783 5698 2 1158 8890 115 33 7 chr6 75189771 75190304 -74326733 - L1_Mur1 LINE L1 -83 5803 5278 2 1158 456 35 0 0 chr6 75190304 75190362 -74326675 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1158 8890 115 33 7 chr6 75190362 75191220 -74325817 - L1_Mur1 LINE L1 -609 5277 4376 2 1158 5596 152 48 9 chr6 75191541 75192135 -74324902 - Lx2A1 LINE L1 -16 6992 6391 2 1158 522 0 0 0 chr6 75192135 75192193 -74324844 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2 1158 5596 152 48 9 chr6 75192193 75192581 -74324456 - Lx2A1 LINE L1 -618 6390 5974 2 1158 379 301 80 46 chr6 75192673 75193330 -74323707 + L1M3 LINE L1 4368 5049 -1094 2 1158 263 317 167 16 chr6 75194397 75194583 -74322454 - B3 SINE B2 -1 215 2 2 1158 2267 225 16 57 chr6 75195576 75196155 -74320882 + RMER19B LTR ERVK 5 559 -343 2 1158 349 203 14 4 chr6 75197200 75197283 -74319754 - Lx6 LINE L1 -1226 6470 6394 2 1158 294 225 88 128 chr6 75197640 75197742 -74319295 + ID2 SINE ID 6 103 -49 2 1158 337 265 22 175 chr6 75197770 75197953 -74319084 - B3 SINE B2 -1 192 38 2 1158 226 50 50 0 chr6 75198447 75198487 -74318550 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 2 1158 701 231 62 62 chr6 75198488 75198714 -74318323 - Lx9 LINE L1 -466 7178 6953 2 1158 1414 243 64 11 chr6 75198707 75198993 -74318044 + Lx9 LINE L1 7168 7472 -172 2 1158 204 67 0 0 chr6 75198993 75199023 -74318014 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 1158 1414 243 64 11 chr6 75199023 75199189 -74317848 + Lx9 LINE L1 7473 7643 -1 2 1158 297 336 96 45 chr6 75199710 75199866 -74317171 + RSINE1 SINE B4 2 165 0 2 1158 5230 203 57 6 chr6 75200172 75201274 -74315763 - Lx2B LINE L1 -2 6998 5841 2 1158 5484 57 4 0 chr6 75202243 75202929 -74314108 - L1Md_F2 LINE L1 -1 6581 5893 2 1158 494 333 10 16 chr6 75202984 75203176 -74313861 + B3A SINE B2 1 191 -7 2 1158 450 0 0 0 chr6 75204111 75204161 -74312876 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1158 2992 38 5 3 chr6 75204544 75204912 -74312125 - L1Md_F3 LINE L1 0 6584 6216 2 1158 431 298 21 14 chr6 75204980 75205123 -74311914 + B1_Mur2 SINE Alu 6 149 0 2 1158 22 35 0 0 chr6 75207852 75207881 -74309156 + AT_rich Low_complexity Low_complexity 1 29 0 2 1158 426 278 0 11 chr6 75208927 75209059 -74307978 + MTD LTR MaLR 18 147 -274 2 1158 220 306 91 83 chr6 75209935 75210067 -74306970 + L2 LINE L2 1888 2020 -1399 2 1158 180 0 0 0 chr6 75210095 75210115 -74306922 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1158 1532 190 43 40 chr6 75210718 75211042 -74305995 + Lx4A LINE L1 6733 7057 -1 2 1158 25 0 0 0 chr6 75211042 75211067 -74305970 + AT_rich Low_complexity Low_complexity 1 25 0 2 1158 564 179 23 103 chr6 75211083 75211257 -74305780 - Lx2B LINE L1 -4 6996 6837 2 1158 4614 107 6 25 chr6 75211715 75212437 -74304600 - L1_Mus3 LINE L1 0 6638 5931 2 1158 513 32 0 0 chr6 75212900 75212963 -74304074 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1158 1126 82 0 0 chr6 75212976 75213122 -74303915 + B1_Mus1 SINE Alu 3 148 0 2 1158 270 0 0 0 chr6 75213122 75213152 -74303885 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1158 191 36 36 0 chr6 75213192 75213220 -74303817 + (TGG)n Simple_repeat Simple_repeat 3 31 0 3 1158 477 242 0 8 chr6 75213675 75213808 -74303229 - Lx7 LINE L1 0 7696 7565 3 1158 904 232 15 59 chr6 75213841 75214111 -74302926 - RMER10A LTR ERVL -10 432 175 3 1158 720 196 0 0 chr6 75214111 75214290 -74302747 + (CTATG)n Simple_repeat Simple_repeat 1 179 0 3 1158 3915 261 136 38 chr6 75214343 75214557 -74302480 - Lx6 LINE L1 -243 7217 6973 3 1158 369 0 0 0 chr6 75214557 75214598 -74302439 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1158 3915 261 136 38 chr6 75214598 75215317 -74301720 - Lx6 LINE L1 -488 6972 6167 3 1158 507 17 0 0 chr6 75215317 75215377 -74301660 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1158 3915 248 128 16 chr6 75215377 75216029 -74301008 - Lx6 LINE L1 -1294 6166 5449 3 1158 482 286 28 7 chr6 75216085 75216226 -74300811 - B1_Mur3 SINE Alu 0 149 6 3 1158 1518 188 19 30 chr6 75216245 75216613 -74300424 - Lx6 LINE L1 -871 5009 4646 3 1158 1907 263 19 7 chr6 75216603 75217066 -74299971 - Lx5 LINE L1 -3 7047 6579 3 1158 2789 188 34 43 chr6 75217069 75217770 -74299267 - Lx6 LINE L1 -2773 3107 2413 3 1158 2186 231 27 6 chr6 75217778 75218291 -74298746 - Lx2B LINE L1 -772 6228 5705 3 1158 410 262 39 0 chr6 75218292 75218395 -74298642 + B3 SINE B2 110 216 0 3 1158 375 228 11 21 chr6 75218527 75218621 -74298416 - Lx6 LINE L1 -3624 2256 2164 3 1158 1872 303 26 59 chr6 75218622 75219282 -74297755 - Lx6 LINE L1 -2 7458 6821 3 1158 1698 240 10 53 chr6 75219285 75219703 -74297334 - MTB_Mm LTR MaLR 0 407 8 3 1158 530 275 111 0 chr6 75219706 75219877 -74297160 - Lx7 LINE L1 -864 6832 6643 3 1158 5919 223 69 17 chr6 75219913 75221784 -74295253 + Lx6 LINE L1 4368 6339 -1121 3 1158 375 60 0 0 chr6 75221794 75221844 -74295193 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1158 355 362 100 17 chr6 75221964 75222144 -74294893 + B3A SINE B2 4 198 0 3 1158 243 133 0 0 chr6 75222645 75222690 -74294347 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1158 224 279 0 0 chr6 75222881 75222960 -74294077 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 1158 2600 98 20 17 chr6 75223072 75223479 -74293558 + Lx LINE L1 6242 6649 -5 3 1158 563 74 0 12 chr6 75223536 75223618 -74293419 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 1158 22 0 0 0 chr6 75223777 75223799 -74293238 + AT_rich Low_complexity Low_complexity 1 22 0 3 1158 351 0 0 0 chr6 75223862 75223901 -74293136 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1158 431 363 18 0 chr6 75223906 75224019 -74293018 - RSINE1 SINE B4 -17 148 34 3 1158 351 65 0 0 chr6 75225213 75225259 -74291778 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1158 25 0 0 0 chr6 75225332 75225357 -74291680 + AT_rich Low_complexity Low_complexity 1 25 0 3 1158 1512 177 3 34 chr6 75225554 75225847 -74291190 + Lx3B LINE L1 6690 6973 0 3 1158 218 106 21 0 chr6 75225862 75225909 -74291128 + (CAAAAA)n Simple_repeat Simple_repeat 4 51 0 3 1158 1060 108 0 51 chr6 75225993 75226149 -74290888 - B1_Mus1 SINE Alu 0 148 1 3 1158 3789 79 5 7 chr6 75226732 75227283 -74289754 - MusHAL1 LINE L1 -546 2166 1617 3 1158 605 64 0 0 chr6 75227279 75227357 -74289680 - MusHAL1 LINE L1 -1214 1498 1421 3 1158 14560 144 15 29 chr6 75227344 75229119 -74287918 + L1_Mus3 LINE L1 3358 5098 -785 3 1158 3009 73 0 10 chr6 75229119 75229519 -74287518 + MTA_Mm LTR MaLR 1 396 0 3 1158 14560 114 57 10 chr6 75229519 75230986 -74286051 + L1_Mus3 LINE L1 5099 6638 0 3 1158 198 0 0 0 chr6 75231329 75231351 -74285686 + (TA)n Simple_repeat Simple_repeat 1 22 0 3 1158 459 0 0 0 chr6 75231430 75231481 -74285556 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1158 501 95 38 9 chr6 75231476 75231582 -74285455 + (CAGAGA)n Simple_repeat Simple_repeat 6 114 0 3 1158 315 0 0 0 chr6 75232386 75232421 -74284616 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1158 438 108 0 0 chr6 75232421 75232486 -74284551 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 1158 583 320 13 0 chr6 75232852 75233005 -74284032 - B3 SINE B2 -43 173 19 3 1158 252 0 0 0 chr6 75233025 75233053 -74283984 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1158 2292 254 27 68 chr6 75233061 75233551 -74283486 - RMER1C Other Other 0 1342 885 3 1158 4262 97 27 0 chr6 75233551 75234151 -74282886 + L1_Mus3 LINE L1 6021 6636 -2 3 1158 2292 267 31 60 chr6 75234151 75234518 -74282519 - RMER1C Other Other -458 884 605 3 1158 610 240 45 11 chr6 75234775 75234952 -74282085 - Lx6 LINE L1 -183 7277 7095 3 1158 374 267 9 37 chr6 75234954 75235063 -74281974 + B1_Mus1 SINE Alu 32 137 -11 3 1158 417 54 0 0 chr6 75235064 75235120 -74281917 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 144 4288 17 0 0 chr6 75235306 75235788 -74281249 + LTRIS_Mm LTR ERV1 1 482 0 3 1159 7357 87 3 1 chr6 75235917 75237188 -74279849 + L1_Mus1 LINE L1 5314 6567 0 3 1159 865 254 5 27 chr6 75237419 75237638 -74279399 - Lx5 LINE L1 -11 7039 6826 3 1159 1387 203 97 0 chr6 75237900 75238249 -74278788 + MYSERV-int LTR ERVK 5898 6280 -270 3 1159 21 36 0 0 chr6 75238307 75238335 -74278702 + AT_rich Low_complexity Low_complexity 1 28 0 3 1159 4738 138 52 30 chr6 75238489 75239377 -74277660 - RLTR13D6 LTR ERVK 0 1023 1 3 1159 311 198 22 25 chr6 75239422 75239557 -74277480 - MYSERV16_I-int LTR ERVK -1061 1265 1169 3 1159 232 328 62 15 chr6 75239702 75239832 -74277205 - MLT1A1 LTR MaLR 0 408 273 3 1159 444 19 0 0 chr6 75239862 75239915 -74277122 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1159 282 296 16 80 chr6 75240045 75240170 -74276867 - RSINE1 SINE B4 -33 132 16 3 1159 211 195 0 0 chr6 75240334 75240375 -74276662 + T-rich Low_complexity Low_complexity 5 45 0 3 1159 1927 192 19 43 chr6 75240841 75241259 -74275778 + Lx4A LINE L1 6648 7055 -3 3 1159 638 288 274 0 chr6 75242538 75242838 -74274199 + RLTR14 LTR ERV1 1 382 0 3 1159 2128 293 85 48 chr6 75243337 75244196 -74272841 - Lx6 LINE L1 -191 7269 6379 3 1159 2159 204 62 88 chr6 75244321 75245029 -74272008 - RMER6C LTR ERVK 0 690 1 3 1159 2149 172 119 29 chr6 75245029 75245508 -74271529 - RMER6-int LTR ERVK 0 3177 2656 3 1159 224 120 20 0 chr6 75245511 75245561 -74271476 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1159 2054 164 8 11 chr6 75245573 75245949 -74271088 - RLTR33 LTR ERVK -257 421 1 3 1159 233 173 175 28 chr6 75248308 75248451 -74268586 - RMER6A LTR ERVK -311 445 282 3 1159 189 0 0 0 chr6 75248473 75248494 -74268543 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 3 1159 653 266 203 25 chr6 75248534 75248815 -74268222 - MTD LTR MaLR -43 376 46 3 1159 232 120 0 39 chr6 75248863 75248915 -74268122 + (TAA)n Simple_repeat Simple_repeat 2 51 0 3 1159 330 123 0 0 chr6 75248920 75248977 -74268060 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1159 417 129 0 0 chr6 75248978 75249048 -74267989 + (GA)n Simple_repeat Simple_repeat 2 71 0 3 1159 267 103 0 0 chr6 75249782 75249821 -74267216 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1159 237 164 68 14 chr6 75249821 75249895 -74267142 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 1159 24 0 0 0 chr6 75249995 75250019 -74267018 + AT_rich Low_complexity Low_complexity 1 24 0 3 1159 1037 109 7 7 chr6 75250550 75250698 -74266339 + B1_Mus1 SINE Alu 1 148 0 3 1159 23 0 0 0 chr6 75250702 75250725 -74266312 + AT_rich Low_complexity Low_complexity 1 23 0 3 1159 1230 80 0 7 chr6 75250855 75251296 -74265741 + (TG)n Simple_repeat Simple_repeat 1 438 0 3 1159 919 279 104 38 chr6 75251553 75251899 -74265138 + MTE2a LTR MaLR 5 373 -6 3 1159 379 309 99 46 chr6 75252193 75252421 -74264616 + MLT1E2 LTR MaLR 286 621 -6 3 1159 405 167 0 0 chr6 75253381 75253459 -74263578 + A-rich Low_complexity Low_complexity 1 78 0 3 1159 341 306 82 77 chr6 75253997 75254137 -74262900 + B3A SINE B2 24 161 -34 3 1159 324 0 0 0 chr6 75254137 75254173 -74262864 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1159 254 306 82 77 chr6 75254173 75254202 -74262835 + B2_Mm2 SINE B2 162 193 -2 3 1159 227 196 0 0 chr6 75254338 75254384 -74262653 + (TATG)n Simple_repeat Simple_repeat 2 47 0 3 1159 3607 224 77 21 chr6 75254768 75255625 -74261412 - Lx5 LINE L1 0 7050 6146 3 1159 4473 176 27 8 chr6 75255648 75256534 -74260503 - L1_Mur2 LINE L1 -6 5871 4969 3 1159 1319 187 24 37 chr6 75256532 75256579 -74260458 - L1_Mur2 LINE L1 -1199 4678 4631 3 1159 198 0 0 0 chr6 75256579 75256601 -74260436 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1159 1319 187 24 37 chr6 75256601 75256848 -74260189 - L1_Mur2 LINE L1 -1247 4630 4388 3 1159 346 421 62 14 chr6 75256875 75257150 -74259887 + B4A SINE B4 1 288 -4 3 1159 288 91 0 0 chr6 75257232 75257276 -74259761 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1159 474 321 0 0 chr6 75257362 75257471 -74259566 + RSINE1 SINE B4 21 129 -36 3 1159 23 0 0 0 chr6 75257484 75257507 -74259530 + AT_rich Low_complexity Low_complexity 1 23 0 3 1159 1023 104 0 0 chr6 75257520 75257664 -74259373 + B1_Mus1 SINE Alu 1 144 -4 3 1159 12863 125 27 72 chr6 75257779 75258733 -74258304 - L1Md_F2 LINE L1 -535 6047 5087 3 1159 4024 49 10 2 chr6 75258733 75259242 -74257795 + L1Md_F2 LINE L1 6068 6580 -2 3 1159 13597 143 68 32 chr6 75259242 75259488 -74257549 - L1_Mus3 LINE L1 -791 5086 4865 3 1159 244 236 83 0 chr6 75259488 75259560 -74257477 + MTD LTR MaLR 338 415 -4 3 1159 13597 143 68 32 chr6 75259560 75262227 -74254810 - L1_Mus3 LINE L1 -791 4864 2450 3 1159 6732 139 20 32 chr6 75262225 75263890 -74253147 + L1_Mus3 LINE L1 5015 6637 -1 3 1159 220 70 23 23 chr6 75263921 75263965 -74253072 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1159 21 0 0 0 chr6 75265546 75265567 -74251470 + AT_rich Low_complexity Low_complexity 1 21 0 3 1159 22 35 0 0 chr6 75265665 75265694 -74251343 + AT_rich Low_complexity Low_complexity 1 29 0 3 1159 1816 76 0 16 chr6 75266301 75266556 -74250481 - L1Md_F2 LINE L1 -12 6570 6320 3 1159 27 29 0 0 chr6 75266620 75266654 -74250383 + AT_rich Low_complexity Low_complexity 1 34 0 3 1159 2764 52 0 3 chr6 75267027 75267372 -74249665 + L1Md_F2 LINE L1 6225 6568 -14 3 1159 26 0 0 0 chr6 75267390 75267416 -74249621 + AT_rich Low_complexity Low_complexity 1 26 0 3 1159 812 319 38 8 chr6 75267438 75267700 -74249337 + MTEb LTR MaLR 103 372 -7 3 1159 588 29 0 0 chr6 75268819 75268889 -74248148 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1159 1362 269 16 28 chr6 75268897 75269284 -74247753 - Lx9 LINE L1 -188 7456 7075 3 1159 324 0 0 0 chr6 75269467 75269503 -74247534 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1159 309 306 30 84 chr6 75270368 75270571 -74246466 + ORR1E LTR MaLR 168 359 0 4 1159 369 58 0 0 chr6 75270977 75271029 -74246008 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1159 286 313 92 33 chr6 75271372 75271524 -74245513 - ORR1D1 LTR MaLR -12 362 202 4 1159 234 0 0 0 chr6 75271846 75271872 -74245165 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 1159 812 114 76 0 chr6 75271873 75272004 -74245033 - L1Md_F2 LINE L1 -23 6559 6419 4 1159 388 379 52 71 chr6 75272110 75272377 -74244660 - B4A SINE B4 -28 264 3 4 1159 201 170 18 36 chr6 75272477 75272532 -74244505 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1159 317 338 89 40 chr6 75272727 75272952 -74244085 - L1MEe LINE L1 -4580 274 39 4 1159 1389 291 51 31 chr6 75273620 75274070 -74242967 - RMER19C LTR ERVK 0 611 153 4 1159 279 0 0 0 chr6 75274071 75274102 -74242935 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1159 4564 91 70 0 chr6 75274950 75275611 -74241426 - L1_Mus1 LINE L1 -3 6564 5858 4 1159 21 0 0 0 chr6 75275632 75275653 -74241384 + AT_rich Low_complexity Low_complexity 1 21 0 4 1159 3051 158 109 6 chr6 75275802 75276452 -74240585 + Lx2B LINE L1 3427 4143 -1743 4 1159 3523 186 39 0 chr6 75276554 75277198 -74239839 - Lx LINE L1 -2 6652 5984 4 1159 30975 86 14 4 chr6 75277201 75282331 -74234706 + L1Md_F2 LINE L1 409 5588 -295 4 1159 7759 60 1 0 chr6 75282335 75283310 -74233727 + L1Md_F2 LINE L1 5593 6568 -14 4 1159 1892 112 0 3 chr6 75283325 75283611 -74233426 - Lx LINE L1 -666 5988 5704 4 1159 798 283 122 28 chr6 75283621 75283974 -74233063 + RLTR20B3 LTR ERVK 131 516 -61 4 1159 1781 157 15 3 chr6 75284010 75284337 -74232700 + Lx2B LINE L1 4202 4532 -1345 4 1159 3072 197 53 10 chr6 75284330 75284554 -74232483 + Lx2B LINE L1 5181 5403 -483 4 1159 287 25 25 0 chr6 75284554 75284594 -74232443 + (CAA)n Simple_repeat Simple_repeat 2 42 0 4 1159 4959 218 67 19 chr6 75284594 75286081 -74230956 + Lx2B LINE L1 5404 6868 -132 4 1159 1252 196 69 19 chr6 75286093 75286185 -74230852 + L1_Mur3 LINE L1 1012 1098 -6630 4 1159 519 78 0 0 chr6 75286185 75286262 -74230775 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1159 1252 197 84 18 chr6 75286262 75286530 -74230507 + L1_Mur3 LINE L1 1099 1405 -4475 4 1159 192 77 0 0 chr6 75286530 75286556 -74230481 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1159 759 201 156 13 chr6 75286556 75286679 -74230358 + L1_Mur3 LINE L1 1406 1549 -4331 4 1159 2470 129 103 25 chr6 75286687 75287145 -74229892 + LTRIS2 LTR ERV1 3 474 -90 4 1159 1530 189 17 17 chr6 75287164 75287524 -74229513 + L1_Mur3 LINE L1 1635 1994 -3886 4 1159 282 132 0 0 chr6 75287920 75287973 -74229064 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1159 1954 148 41 7 chr6 75288495 75288868 -74228169 + Lx3C LINE L1 5609 6022 -278 4 1159 1001 119 0 6 chr6 75288872 75289033 -74228004 + (GAA)n Simple_repeat Simple_repeat 3 162 0 4 1159 1205 96 0 6 chr6 75289035 75289214 -74227823 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 4 1159 569 266 0 0 chr6 75289224 75289352 -74227685 - Lx2B LINE L1 -156 6844 6717 4 1159 273 57 0 0 chr6 75289894 75289929 -74227108 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1159 949 109 0 0 chr6 75289929 75290055 -74226982 - B1_Mus1 SINE Alu -10 138 13 4 1159 505 103 0 0 chr6 75290746 75290824 -74226213 - Lx2 LINE L1 0 6997 6920 4 1159 189 107 0 0 chr6 75291039 75291067 -74225970 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1159 242 178 0 43 chr6 75292054 75292101 -74224936 + B3A SINE B2 1 45 -153 4 1159 6218 104 24 18 chr6 75292117 75293077 -74223960 - Lx3_Mus LINE L1 -1 7008 6043 4 1159 2193 71 0 0 chr6 75293093 75293374 -74223663 + L1Md_F2 LINE L1 6146 6426 -156 4 1159 33109 75 1 18 chr6 75293375 75298541 -74218496 + L1Md_F2 LINE L1 511 5586 -297 4 1159 7987 53 0 1 chr6 75298541 75299526 -74217511 + L1Md_F2 LINE L1 5587 6570 -12 4 1159 213 65 0 0 chr6 75299536 75299567 -74217470 + (CAA)n Simple_repeat Simple_repeat 3 33 0 4 1159 1202 47 12 12 chr6 75299567 75299739 -74217298 + L1Md_F2 LINE L1 6410 6581 -1 4 1159 23 54 0 0 chr6 75299754 75299791 -74217246 + AT_rich Low_complexity Low_complexity 1 37 0 4 1159 1508 87 19 97 chr6 75299791 75300059 -74216978 + Lx3A LINE L1 5783 6029 -980 4 1159 1643 142 23 0 chr6 75300235 75300496 -74216541 - Lx2B LINE L1 -1013 5987 5721 4 1159 3286 174 22 3 chr6 75300496 75301083 -74215954 + Lx2B LINE L1 6398 6995 -5 4 1159 197 159 16 0 chr6 75301133 75301196 -74215841 + T-rich Low_complexity Low_complexity 2 65 0 4 1159 931 142 0 7 chr6 75301197 75301346 -74215691 - B1_Mus1 SINE Alu 0 148 1 4 1159 180 163 0 0 chr6 75301537 75301580 -74215457 + A-rich Low_complexity Low_complexity 1 43 0 4 1159 270 0 0 0 chr6 75302356 75302386 -74214651 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1159 4461 98 30 15 chr6 75302387 75303049 -74213988 + Lx3A LINE L1 6160 6831 -150 4 1159 545 347 36 36 chr6 75303085 75303336 -74213701 - RLTR17 LTR ERVK -177 515 265 4 1159 26 30 0 0 chr6 75303374 75303407 -74213630 + AT_rich Low_complexity Low_complexity 1 33 0 4 1159 207 0 0 0 chr6 75303461 75303484 -74213553 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1159 213 205 0 0 chr6 75303822 75303861 -74213176 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1159 503 341 38 22 chr6 75305764 75305947 -74211090 + B3A SINE B2 6 191 -7 4 1159 23 0 0 0 chr6 75308068 75308091 -74208946 + AT_rich Low_complexity Low_complexity 1 23 0 4 1159 979 131 7 0 chr6 75308218 75308363 -74208674 - B1_Mus1 SINE Alu -1 147 2 4 1159 567 53 0 0 chr6 75309499 75309574 -74207463 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 1159 5388 133 27 0 chr6 75309760 75310609 -74206428 - Lx2 LINE L1 -2 6995 6124 4 1159 45 0 0 0 chr6 75311998 75312043 -74204994 + AT_rich Low_complexity Low_complexity 1 45 0 4 1159 2154 102 48 3 chr6 75312111 75312424 -74204613 + ORR1A2 LTR MaLR 1 327 0 4 1159 411 331 0 47 chr6 75312514 75312685 -74204352 - RSINE1 SINE B4 0 165 3 4 1159 188 246 0 14 chr6 75312692 75312762 -74204275 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 1159 564 245 84 0 chr6 75313152 75313307 -74203730 + L1_Rod LINE L1 4842 5009 -838 4 1159 284 48 24 0 chr6 75313573 75313615 -74203422 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1159 654 130 0 0 chr6 75313626 75313734 -74203303 + (CA)n Simple_repeat Simple_repeat 2 109 0 4 1159 483 287 35 35 chr6 75313783 75313924 -74203113 + B1_Mm SINE Alu 6 146 -1 4 1159 741 176 0 0 chr6 75314300 75314442 -74202595 + GA-rich Low_complexity Low_complexity 4 145 0 4 1159 356 301 129 29 chr6 75314455 75314653 -74202384 + B4A SINE B4 24 246 -46 4 1159 183 80 0 0 chr6 75314753 75314778 -74202259 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1159 278 395 0 7 chr6 75314952 75315087 -74201950 - MER57C2 LTR ERV1 -249 185 52 4 1159 489 17 0 0 chr6 75316148 75316206 -74200831 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1159 465 66 0 0 chr6 75316429 75316490 -74200547 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1159 342 252 45 9 chr6 75316609 75316721 -74200316 - Tigger14a DNA MER2_type -103 221 106 4 1159 350 235 97 10 chr6 75316729 75316832 -74200205 - MIRc SINE MIR -14 254 143 4 1159 207 233 63 48 chr6 75316825 75316888 -74200149 + MIRm SINE MIR 212 275 -1 4 1159 25 0 0 0 chr6 75317061 75317086 -74199951 + AT_rich Low_complexity Low_complexity 1 25 0 4 1159 240 224 0 0 chr6 75317352 75317419 -74199618 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1159 261 0 0 0 chr6 75317429 75317458 -74199579 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1159 333 0 0 0 chr6 75317474 75317511 -74199526 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1159 1098 75 7 0 chr6 75317583 75317729 -74199308 + B1_Mus1 SINE Alu 2 148 0 4 1159 925 264 53 69 chr6 75317969 75318344 -74198693 - ORR1D1 LTR MaLR -3 371 3 4 1159 762 202 109 6 chr6 75318568 75318742 -74198295 - Lx2 LINE L1 -2 6995 6804 4 1159 22 35 0 0 chr6 75318798 75318827 -74198210 + AT_rich Low_complexity Low_complexity 1 29 0 4 1159 620 249 75 16 chr6 75318845 75319033 -74198004 + Lx7 LINE L1 6550 6748 -712 4 1159 234 208 0 0 chr6 75319056 75319109 -74197928 + GA-rich Low_complexity Low_complexity 1 53 0 4 1159 788 196 12 0 chr6 75319126 75319299 -74197738 + GA-rich Low_complexity Low_complexity 3 177 0 4 1159 849 293 42 43 chr6 75319300 75319668 -74197369 + Lx7 LINE L1 6743 7089 -371 4 1159 243 0 0 0 chr6 75319668 75319695 -74197342 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1159 817 323 80 84 chr6 75319695 75320003 -74197034 + Lx7 LINE L1 7090 7416 -44 4 1159 630 213 0 0 chr6 75320019 75320169 -74196868 + (TA)n Simple_repeat Simple_repeat 2 151 0 4 1159 21 57 0 0 chr6 75320187 75320222 -74196815 + AT_rich Low_complexity Low_complexity 1 35 0 4 1159 21 57 0 0 chr6 75320838 75320873 -74196164 + AT_rich Low_complexity Low_complexity 1 35 0 4 1159 342 0 0 0 chr6 75320875 75320913 -74196124 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1159 321 26 0 0 chr6 75320913 75320950 -74196087 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1159 1725 216 50 8 chr6 75321204 75321582 -74195455 - ORR1B1 LTR MaLR 0 394 1 4 1159 13141 65 2 0 chr6 75322060 75323755 -74193282 + L1Md_F2 LINE L1 3887 5585 -298 4 1159 7970 52 1 1 chr6 75323756 75324739 -74192298 + L1Md_F2 LINE L1 5587 6569 -13 4 1159 216 83 41 20 chr6 75325027 75325076 -74191961 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 4 1159 225 65 0 0 chr6 75325192 75325223 -74191814 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1159 351 0 0 0 chr6 75325288 75325327 -74191710 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1159 22 35 0 0 chr6 75325941 75325970 -74191067 + AT_rich Low_complexity Low_complexity 1 29 0 4 1159 445 213 0 0 chr6 75326043 75326118 -74190919 + RMER12B LTR ERVK 1330 1404 0 4 1159 318 115 0 0 chr6 75326339 75326400 -74190637 + (T)n Simple_repeat Simple_repeat 1 61 0 4 1159 39217 30 0 6 chr6 75326612 75332611 -74184426 - L1Md_T LINE L1 0 6582 627 4 1159 225 94 0 0 chr6 75333593 75333625 -74183412 + (GGA)n Simple_repeat Simple_repeat 2 33 0 4 1159 279 0 0 0 chr6 75334075 75334106 -74182931 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1159 206 182 23 0 chr6 75335116 75335160 -74181877 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1159 228 185 0 0 chr6 75335205 75335259 -74181778 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1159 195 129 0 0 chr6 75335414 75335445 -74181592 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1159 206 77 25 25 chr6 75336196 75336236 -74180801 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 4 1159 1500 231 105 26 chr6 75336566 75337033 -74180004 + Lx3C LINE L1 6471 6974 -2 5 1159 303 121 0 0 chr6 75337232 75337290 -74179747 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1159 239 323 32 21 chr6 75338342 75338437 -74178600 + BC1_Mm scRNA scRNA 1 96 -56 5 1159 272 172 17 0 chr6 75339298 75339356 -74177681 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 5 1159 2437 214 111 55 chr6 75339497 75340267 -74176770 - ORR1A3-int LTR MaLR -1015 948 135 5 1159 1357 185 44 16 chr6 75340267 75340574 -74176463 + ORR1A3 LTR MaLR 1 323 -71 5 1159 2229 109 5 53 chr6 75341066 75341625 -74175412 + L1_Mus3 LINE L1 6263 6638 0 5 1159 4609 80 16 3 chr6 75341685 75342304 -74174733 - L1Md_F2 LINE L1 -1 6581 5955 5 1159 206 154 0 55 chr6 75342611 75342666 -74174371 + T-rich Low_complexity Low_complexity 6 57 0 5 1159 39 68 0 0 chr6 75343929 75344003 -74173034 + AT_rich Low_complexity Low_complexity 1 74 0 5 1159 22 0 0 0 chr6 75345013 75345035 -74172002 + AT_rich Low_complexity Low_complexity 1 22 0 5 1159 22 0 0 0 chr6 75345846 75345868 -74171169 + AT_rich Low_complexity Low_complexity 1 22 0 5 1159 219 377 53 32 chr6 75346471 75346660 -74170377 + L2 LINE L2 1208 1400 -2019 5 1159 281 296 16 23 chr6 75347070 75347198 -74169839 + (CATATA)n Simple_repeat Simple_repeat 2 128 0 5 1159 182 37 37 0 chr6 75347210 75347237 -74169800 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1159 227 286 0 54 chr6 75347261 75347335 -74169702 - RMER15 LTR ERVL -165 410 341 5 1159 11402 90 2 23 chr6 75348112 75349527 -74167510 - L1_Mus1 LINE L1 0 6567 5258 5 1159 1133 69 14 0 chr6 75349527 75349672 -74167365 - B1_Mm SINE Alu 0 147 1 5 1159 11402 110 3 62 chr6 75349672 75350843 -74166194 - L1_Mus1 LINE L1 -626 5257 4097 5 1159 7525 207 43 62 chr6 75351405 75352265 -74164772 + L1VL2 LINE L1 589 1415 -4471 5 1159 4027 85 5 20 chr6 75352265 75352851 -74164186 + L1_Mus3 LINE L1 6060 6636 -2 5 1159 9018 156 51 28 chr6 75352851 75354168 -74162869 + L1VL2 LINE L1 1416 2629 -3257 5 1159 360 0 0 0 chr6 75354168 75354208 -74162829 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1159 9018 150 52 20 chr6 75354208 75354859 -74162178 + L1VL2 LINE L1 2625 3299 -615 5 1159 2795 148 8 4 chr6 75354860 75355341 -74161696 + Lx3_Mus LINE L1 6523 7005 -4 5 1159 282 29 0 0 chr6 75355481 75355516 -74161521 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1159 210 37 0 0 chr6 75355922 75355949 -74161088 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1159 4567 90 0 9 chr6 75356055 75356694 -74160343 - L1Md_F2 LINE L1 -2 6580 5948 5 1159 580 74 10 21 chr6 75356849 75356945 -74160092 + L1_Mus2 LINE L1 6472 6566 0 5 1159 319 239 66 33 chr6 75357182 75357273 -74159764 + B3A SINE B2 1 94 -104 5 1159 201 167 0 0 chr6 75357319 75357355 -74159682 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1159 21 36 0 0 chr6 75357355 75357383 -74159654 + AT_rich Low_complexity Low_complexity 1 28 0 5 1159 1560 312 76 27 chr6 75358307 75359120 -74157917 + Lx6 LINE L1 294 1146 -6582 5 1159 615 271 50 6 chr6 75359140 75359322 -74157715 + Lx6 LINE L1 7212 7401 -59 5 1159 24 0 0 0 chr6 75359342 75359366 -74157671 + AT_rich Low_complexity Low_complexity 1 24 0 5 1159 1149 183 0 5 chr6 75359496 75359694 -74157343 + ORR1C1 LTR MaLR 175 371 -7 5 1159 3091 145 104 46 chr6 75359752 75360358 -74156679 - RLTR26 LTR ERVK -1 641 1 5 1159 3666 281 32 19 chr6 75360460 75361563 -74155474 + Lx6 LINE L1 6039 7155 -305 5 1159 432 0 0 0 chr6 75361563 75361611 -74155426 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1159 496 256 68 0 chr6 75361611 75361728 -74155309 + Lx6 LINE L1 7287 7411 -49 5 1159 209 200 0 0 chr6 75361859 75361894 -74155143 + polypurine Low_complexity Low_complexity 1 35 0 5 1159 486 0 0 0 chr6 75361964 75362018 -74155019 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1159 875 59 8 0 chr6 75362216 75362334 -74154703 + B1_Mm SINE Alu 29 147 0 5 1159 423 328 0 0 chr6 75362366 75362485 -74154552 + B1F SINE Alu 27 145 -4 5 1159 32 0 0 0 chr6 75362570 75362602 -74154435 + AT_rich Low_complexity Low_complexity 1 32 0 5 1159 430 315 0 7 chr6 75362603 75362753 -74154284 + Charlie5 DNA MER1_type 2234 2382 -242 5 1159 2674 203 97 8 chr6 75363050 75363720 -74153317 - Lx5 LINE L1 -575 6475 5746 5 1159 1075 168 132 13 chr6 75363711 75363799 -74153238 - Lx5 LINE L1 -265 5612 5526 5 1159 495 0 0 0 chr6 75363799 75363854 -74153183 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 5 1159 1075 168 132 13 chr6 75363854 75364000 -74153037 - Lx5 LINE L1 -352 5525 5350 5 1159 6103 168 45 14 chr6 75364023 75365194 -74151843 - Lx2 LINE L1 -2 6995 5789 5 1159 6291 153 21 33 chr6 75365231 75366392 -74150645 - Lx3A LINE L1 -9 6972 5826 5 144 499 213 2 73 chr6 75366398 75366547 -74150490 - L1_Mur2 LINE L1 -470 5416 5279 5 1160 4717 202 30 20 chr6 75366565 75367684 -74149353 - Lx5 LINE L1 -527 5350 4221 5 1160 26 64 0 0 chr6 75368691 75368738 -74148299 + AT_rich Low_complexity Low_complexity 1 47 0 5 1160 393 304 56 81 chr6 75369243 75369404 -74147633 - B3A SINE B2 0 198 42 5 1160 214 159 45 0 chr6 75369926 75369970 -74147067 + A-rich Low_complexity Low_complexity 5 50 0 5 1160 213 280 27 154 chr6 75369997 75370107 -74146930 + PB1 SINE Alu 29 124 -3 5 1160 387 60 0 0 chr6 75370189 75370239 -74146798 + (CTAA)n Simple_repeat Simple_repeat 2 51 0 5 1160 403 284 84 80 chr6 75370606 75370843 -74146194 - L1MA6 LINE L1 -330 5970 5733 5 1160 246 173 19 0 chr6 75370875 75370927 -74146110 + L1MA5 LINE L1 6230 6282 -18 5 1160 522 327 12 55 chr6 75371169 75371334 -74145703 + B3A SINE B2 6 163 -35 5 1160 330 115 0 0 chr6 75371343 75371404 -74145633 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1160 262 230 5 39 chr6 75371446 75371655 -74145382 + (CA)n Simple_repeat Simple_repeat 1 201 0 5 1160 234 0 0 0 chr6 75371952 75371978 -74145059 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1160 622 143 0 0 chr6 75371978 75372076 -74144961 - B1_Mus2 SINE Alu -3 144 47 5 1160 285 247 43 33 chr6 75372002 75372094 -74144943 - MT2B LTR ERVL -323 278 186 5 1160 344 376 23 0 chr6 75372301 75372434 -74144603 - B3A SINE B2 -57 141 6 5 1160 30 77 0 0 chr6 75372469 75372534 -74144503 + AT_rich Low_complexity Low_complexity 1 65 0 5 1160 348 348 40 74 chr6 75372724 75372873 -74144164 - B4 SINE B4 -21 271 128 5 1160 672 125 117 0 chr6 75372878 75373006 -74144031 + B2_Mm2 SINE B2 51 193 -2 5 1160 686 180 6 17 chr6 75373030 75373211 -74143826 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 1160 5375 188 116 43 chr6 75373461 75374896 -74142141 - MYSERV6-int LTR ERVK -604 8355 6816 5 1160 2407 122 0 5 chr6 75374933 75375311 -74141726 - L1_Mus4 LINE L1 -3 6633 6258 5 1160 1959 89 0 0 chr6 75375311 75375568 -74141469 + L1_Mus4 LINE L1 5996 6252 -384 5 1160 471 184 11 0 chr6 75375573 75375660 -74141377 - MYSERV6-int LTR ERVK -2234 6725 6638 5 1160 391 185 12 0 chr6 75375659 75375740 -74141297 - MYSERV6-int LTR ERVK -2515 6444 6363 5 1160 296 190 0 18 chr6 75375740 75375818 -74141219 - PB1D9 SINE Alu -78 71 3 5 1160 222 271 0 0 chr6 75375795 75375843 -74141194 - B1_Mur4 SINE Alu -97 53 6 5 1160 740 168 29 29 chr6 75375912 75376084 -74140953 - MYSERV6-int LTR ERVK -3933 5026 4855 5 1160 2686 189 39 8 chr6 75376096 75376689 -74140348 - MYSERV6-int LTR ERVK -6287 2672 2062 5 1160 3316 153 35 124 chr6 75376691 75377435 -74139602 - RLTR33 LTR ERVK 0 678 1 5 1160 8239 175 28 23 chr6 75377618 75379289 -74137748 - MYSERV6-int LTR ERVK -6918 2041 363 5 1160 1898 194 14 30 chr6 75379291 75379721 -74137316 - MYSERV6-int LTR ERVK -8533 426 4 5 1160 2422 181 150 44 chr6 75380449 75381074 -74135963 + L1_Mur2 LINE L1 896 1591 -4286 5 1160 2440 80 18 12 chr6 75381074 75381417 -74135620 + L1Md_F2 LINE L1 6226 6570 -12 5 1160 2422 204 36 66 chr6 75381417 75381736 -74135301 + L1_Mur2 LINE L1 1592 1903 -3974 5 1160 1013 239 30 22 chr6 75381741 75382011 -74135026 - MTC-int LTR MaLR -985 273 2 5 1160 1132 288 4 4 chr6 75382012 75382291 -74134746 - MTC LTR MaLR 0 421 143 5 1160 276 30 0 0 chr6 75382292 75382325 -74134712 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1160 1671 155 4 0 chr6 75382325 75382590 -74134447 + ORR1A2 LTR MaLR 60 325 -2 5 1160 3708 268 49 33 chr6 75382597 75384427 -74132610 - Lx5 LINE L1 -91 6959 5100 5 1160 1597 70 70 0 chr6 75384429 75384656 -74132381 - L1Md_F3 LINE L1 -1 6583 6341 5 1160 5069 49 2 0 chr6 75384658 75385285 -74131752 + L1Md_F3 LINE L1 5723 6350 -234 5 1160 254 59 0 0 chr6 75385283 75385317 -74131720 - L1_Mur3 LINE L1 -771 5109 5076 5 1160 900 171 11 0 chr6 75385314 75385489 -74131548 - Lx5 LINE L1 -1378 4499 4323 5 1160 10191 222 50 33 chr6 75385488 75386673 -74130364 - L1_Mur2 LINE L1 -809 5068 3849 5 1160 951 57 0 0 chr6 75386673 75386795 -74130242 + (TG)n Simple_repeat Simple_repeat 2 123 0 5 1160 10191 222 50 33 chr6 75386795 75387385 -74129652 - L1_Mur2 LINE L1 -2029 3848 3286 5 1160 1128 68 7 0 chr6 75387385 75387531 -74129506 - B1_Mus1 SINE Alu -1 147 1 5 1160 10191 222 50 33 chr6 75387531 75388692 -74128345 - L1_Mur2 LINE L1 -2592 3285 2083 5 1160 1050 107 29 6 chr6 75388693 75388863 -74128174 - L1_Mus3 LINE L1 -6 6632 6459 5 1160 1994 79 0 0 chr6 75388863 75389130 -74127907 + L1_Mus3 LINE L1 6124 6390 -248 5 1160 2664 231 25 72 chr6 75389133 75389176 -74127861 - L1_Mur2 LINE L1 -3774 2103 2061 5 1160 405 0 0 0 chr6 75389176 75389221 -74127816 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1160 234 0 0 0 chr6 75389221 75389246 -74127791 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1160 333 0 0 0 chr6 75389246 75389282 -74127755 + (GA)n Simple_repeat Simple_repeat 1 37 0 5 1160 2664 231 26 69 chr6 75389282 75390218 -74126819 - L1_Mur2 LINE L1 -3817 2060 1162 5 1160 4297 108 49 1 chr6 75390221 75391527 -74125510 + L1Md_F LINE L1 416 1841 -4042 5 1160 7453 73 2 34 chr6 75391519 75392592 -74124445 + L1Md_F LINE L1 4167 5205 -678 5 1160 3421 87 2 0 chr6 75392591 75393053 -74123984 + L1Md_F2 LINE L1 5813 6275 -307 5 1160 2458 87 42 57 chr6 75393065 75393468 -74123569 + L1Md_F2 LINE L1 6178 6574 -8 5 1160 747 264 19 14 chr6 75393531 75393820 -74123217 - L1_Mur2 LINE L1 -6555 1173 892 5 1160 231 264 125 0 chr6 75394234 75394306 -74122731 - MTC LTR MaLR -340 81 1 5 1160 2298 170 40 0 chr6 75394321 75394722 -74122315 + Lx3B LINE L1 6553 6969 -4 5 1160 279 104 0 0 chr6 75394729 75394777 -74122260 + (TAA)n Simple_repeat Simple_repeat 1 48 0 5 1160 395 106 0 15 chr6 75394978 75395045 -74121992 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1160 314 359 20 33 chr6 75395095 75395245 -74121792 - B4A SINE B4 -18 274 127 5 1160 22 0 0 0 chr6 75395445 75395467 -74121570 + AT_rich Low_complexity Low_complexity 1 22 0 5 1160 1547 242 22 36 chr6 75395920 75396284 -74120753 + ORR1B2 LTR MaLR 1 359 -8 5 1160 182 128 26 0 chr6 75396799 75396838 -74120199 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1160 708 280 45 5 chr6 75396859 75397060 -74119977 - B3 SINE B2 -7 209 1 5 1160 282 286 250 11 chr6 75397085 75397177 -74119860 + PB1D10 SINE Alu 1 114 -3 5 1160 21 36 0 0 chr6 75397234 75397262 -74119775 + AT_rich Low_complexity Low_complexity 1 28 0 5 1160 324 0 0 0 chr6 75397366 75397402 -74119635 + (CATA)n Simple_repeat Simple_repeat 2 37 0 5 1160 210 37 0 0 chr6 75397622 75397649 -74119388 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1160 5651 53 0 0 chr6 75397657 75398357 -74118680 - L1Md_F2 LINE L1 -12 6570 5871 6 1160 399 148 22 11 chr6 75398569 75398658 -74118379 + (TA)n Simple_repeat Simple_repeat 2 91 0 6 1160 385 329 55 0 chr6 75398790 75398936 -74118101 + MLT1F2 LTR MaLR 97 250 -310 6 1160 540 86 16 88 chr6 75399141 75399333 -74117704 + A-rich Low_complexity Low_complexity 3 180 0 6 1160 8762 25 0 1 chr6 75399633 75400663 -74116374 + L1Md_A LINE L1 4558 5586 -297 6 1160 8410 29 2 0 chr6 75400663 75401657 -74115380 + L1Md_A LINE L1 5587 6582 0 6 1160 1708 205 294 9 chr6 75403268 75403805 -74113232 - RMER6C LTR ERVK 0 690 1 6 1160 26 30 0 0 chr6 75403881 75403914 -74113123 + AT_rich Low_complexity Low_complexity 1 33 0 6 1160 585 42 0 0 chr6 75403987 75404059 -74112978 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 1160 366 339 94 12 chr6 75404172 75404342 -74112695 + MTD LTR MaLR 20 203 -216 6 1160 615 218 77 0 chr6 75404345 75404441 -74112596 - L1_Mur2 LINE L1 -254 5623 5520 6 1160 4204 139 26 1 chr6 75404441 75405133 -74111904 - Lx LINE L1 -6 6648 5940 6 1160 615 218 77 0 chr6 75405133 75405206 -74111831 - L1_Mur2 LINE L1 -358 5519 5443 6 1160 183 156 0 0 chr6 75405206 75405238 -74111799 + CT-rich Low_complexity Low_complexity 2 33 0 6 1160 311 0 0 25 chr6 75405300 75405340 -74111697 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1160 1011 104 0 0 chr6 75405341 75405476 -74111561 - B1_Mus2 SINE Alu -12 135 1 6 1160 961 133 20 0 chr6 75405482 75405632 -74111405 - B2_Mm2 SINE B2 -41 154 2 6 1160 612 165 33 8 chr6 75405632 75405754 -74111283 - L1_Mur2 LINE L1 -515 5362 5238 6 1160 40442 15 0 7 chr6 75405755 75411962 -74105075 - L1Md_A LINE L1 -1 6581 422 6 1160 1028 136 114 0 chr6 75411963 75412147 -74104890 - L1_Mur2 LINE L1 -628 5249 5045 6 1160 1250 172 1 21 chr6 75412164 75412410 -74104627 + L1VL1 LINE L1 217 440 -6198 6 1160 4161 41 4 6 chr6 75412410 75412923 -74104114 + L1Md_F2 LINE L1 6071 6582 0 6 1160 1090 192 42 0 chr6 75412943 75413157 -74103880 - MERVL_2A-int LTR ERVL -3786 1975 1753 6 1160 6134 164 71 7 chr6 75413166 75414293 -74102744 + Lx4A LINE L1 5645 6843 -215 6 1160 3037 248 55 93 chr6 75414465 75415620 -74101417 - Lx7 LINE L1 0 7696 6586 6 1160 3896 246 38 9 chr6 75415629 75416882 -74100155 - L1_Mur3 LINE L1 -4283 1597 303 6 1160 584 316 29 0 chr6 75417089 75417263 -74099774 - ORR1E LTR MaLR -177 182 4 6 1160 603 113 86 9 chr6 75417633 75417749 -74099288 - Lx LINE L1 -2 6652 6528 6 1160 396 59 0 0 chr6 75417775 75417826 -74099211 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1160 516 364 89 35 chr6 75418413 75419045 -74097992 + MER44D DNA MER2_type 15 680 -25 6 1160 28 79 0 0 chr6 75421320 75421383 -74095654 + AT_rich Low_complexity Low_complexity 1 63 0 6 1160 330 345 24 40 chr6 75421978 75422102 -74094935 - B1_Mur4 SINE Alu -27 123 2 6 1160 1058 270 132 52 chr6 75422757 75423218 -74093819 - RMER4B LTR ERVK -9 576 79 6 1160 274 43 64 0 chr6 75424026 75424073 -74092964 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 6 1160 280 280 55 3 chr6 75424257 75424353 -74092684 + B1F2 SINE Alu 13 111 -38 6 1160 4190 278 64 38 chr6 75424968 75424994 -74092043 + RodERV21-int LTR ERV1 1324 1354 -3637 6 1160 231 61 0 0 chr6 75424994 75425027 -74092010 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 1160 4190 278 64 38 chr6 75425027 75426359 -74090678 + RodERV21-int LTR ERV1 1355 2718 -2273 6 1160 187 114 22 22 chr6 75426518 75426563 -74090474 + A-rich Low_complexity Low_complexity 2 46 0 6 1160 1408 275 224 50 chr6 75426973 75427545 -74089492 - RMER13A LTR ERVK -188 672 1 6 1160 23 0 0 0 chr6 75428387 75428410 -74088627 + AT_rich Low_complexity Low_complexity 1 23 0 6 1160 27 49 0 0 chr6 75428879 75428920 -74088117 + AT_rich Low_complexity Low_complexity 1 41 0 6 1160 226 302 71 20 chr6 75429016 75429114 -74087923 - PB1D10 SINE Alu -6 111 9 6 1160 249 281 175 15 chr6 75429122 75429259 -74087778 + MER89 LTR ERV1 399 557 -2 6 1160 841 186 104 9 chr6 75430166 75430423 -74086614 + Lx4B LINE L1 6670 7010 -48 6 1160 740 337 59 49 chr6 75430529 75431246 -74085791 + MER89-int LTR ERV1 1678 2401 -4400 6 1160 1662 237 27 17 chr6 75431263 75431666 -74085371 + MTB_Mm LTR MaLR 1 407 0 6 1160 296 346 59 54 chr6 75432348 75432888 -74084149 + L1M2 LINE L1 2177 2719 -3424 6 1160 235 241 98 37 chr6 75432991 75433073 -74083964 + MTD LTR MaLR 6 92 -304 6 1160 40 37 0 0 chr6 75433073 75433127 -74083910 + AT_rich Low_complexity Low_complexity 1 54 0 6 1160 423 331 128 35 chr6 75433148 75433320 -74083717 + MTD LTR MaLR 134 321 -98 6 1160 239 232 0 0 chr6 75433615 75433684 -74083353 + L1MC4a LINE L1 5333 5401 -890 6 1160 227 299 86 80 chr6 75433700 75433779 -74083258 + Lx9 LINE L1 7294 7356 -288 6 1160 465 19 0 0 chr6 75433779 75433833 -74083204 + (GGGAGA)n Simple_repeat Simple_repeat 5 58 0 6 1160 227 299 86 80 chr6 75433833 75433981 -74083056 + Lx9 LINE L1 7357 7519 -125 6 1160 495 78 0 0 chr6 75433981 75434058 -74082979 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 6 1160 227 299 86 80 chr6 75434058 75434178 -74082859 + Lx9 LINE L1 7520 7644 0 6 1160 941 181 12 0 chr6 75434860 75435020 -74082017 + ORR1A4 LTR MaLR 160 321 -8 6 1160 754 207 0 73 chr6 75435024 75435201 -74081836 + ORR1A4-int LTR MaLR 1 164 -1799 6 1160 649 247 58 47 chr6 75435193 75435384 -74081653 - ORR1B1 LTR MaLR -165 229 37 6 1160 332 306 40 40 chr6 75435385 75435511 -74081526 + RMER15 LTR ERVL 406 531 -44 6 1160 466 278 70 16 chr6 75435691 75435819 -74081218 - B1_Mur1 SINE Alu -2 147 13 6 1160 303 308 72 43 chr6 75435695 75435834 -74081203 - ID_B1 SINE B4 -4 220 78 6 1160 585 340 97 35 chr6 75436645 75437212 -74079825 + L1MC4a LINE L1 5995 6596 -1286 6 1160 1975 106 3 10 chr6 75437246 75437543 -74079494 + L1_Mus4 LINE L1 6342 6636 0 6 1160 222 230 44 33 chr6 75437653 75437791 -74079246 + (TATATG)n Simple_repeat Simple_repeat 1 139 0 6 1160 396 307 107 55 chr6 75437917 75438227 -74078810 + L1MC4a LINE L1 6946 7271 -611 6 1160 612 0 0 0 chr6 75438320 75438388 -74078649 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 6 1160 462 36 0 0 chr6 75439121 75439177 -74077860 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 6 1160 1002 99 0 0 chr6 75439182 75439313 -74077724 - B1_Mus1 SINE Alu -15 133 3 6 1160 2012 138 29 3 chr6 75439981 75440331 -74076706 - RLTR15 LTR ERVK 0 359 1 6 1160 866 283 65 91 chr6 75440480 75440787 -74076250 - ORR1E LTR MaLR -50 309 11 6 1160 683 298 6 37 chr6 75440795 75440959 -74076078 + RSINE1 SINE B4 7 165 0 6 1160 237 378 71 56 chr6 75440995 75441474 -74075563 + L1MDa LINE L1 53 538 -6095 6 1160 301 338 208 20 chr6 75441889 75442134 -74074903 + B4A SINE B4 1 291 -1 6 1160 180 125 62 138 chr6 75444291 75444356 -74072681 + L2 LINE L2 849 908 -2511 6 1160 246 164 0 0 chr6 75444406 75444461 -74072576 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1160 295 53 53 18 chr6 75445941 75445998 -74071039 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 1160 489 284 0 41 chr6 75446342 75446489 -74070548 - B1_Mur1 SINE Alu -8 141 1 6 1160 831 95 14 7 chr6 75446569 75446707 -74070330 - L1_Mus3 LINE L1 -4 6634 6496 6 1160 492 77 0 0 chr6 75446713 75446778 -74070259 + L1_Mus3 LINE L1 6372 6436 -130 6 1160 1162 267 63 23 chr6 75446784 75447133 -74069904 + ORR1D2 LTR MaLR 8 370 0 6 1160 21 57 0 0 chr6 75447671 75447706 -74069331 + AT_rich Low_complexity Low_complexity 1 35 0 6 1160 714 245 34 34 chr6 75448861 75449068 -74067969 - Lx6 LINE L1 -237 7223 7017 6 1160 641 264 168 4 chr6 75449087 75449319 -74067718 - Lx9 LINE L1 -181 7463 7194 6 1160 274 280 146 85 chr6 75449355 75449519 -74067518 - Lx8 LINE L1 -70 7403 7230 6 1160 237 362 21 0 chr6 75449557 75449651 -74067386 + Lx8 LINE L1 7115 7210 -263 6 1160 216 0 0 0 chr6 75449812 75449836 -74067201 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1160 468 338 28 7 chr6 75450461 75450604 -74066433 - RSINE1 SINE B4 -8 157 12 6 1160 411 315 16 16 chr6 75450742 75450871 -74066166 - B1F SINE Alu -4 145 17 6 1160 242 182 0 0 chr6 75450911 75450955 -74066082 - L1MDb LINE L1 -2028 4378 4335 6 1160 268 361 57 57 chr6 75451318 75451615 -74065422 + Lx8 LINE L1 7146 7442 -31 6 1160 273 239 0 15 chr6 75451657 75451725 -74065312 - L1MDb LINE L1 -5382 1027 961 6 1160 2732 41 6 0 chr6 75452383 75452722 -74064315 - MTA_Mm LTR MaLR -55 341 1 6 1160 1033 82 7 20 chr6 75453451 75453600 -74063437 + B1_Mus1 SINE Alu 1 147 -1 6 1160 272 282 13 0 chr6 75453790 75453868 -74063169 + ID4_ SINE ID 3 81 -2 6 1160 358 402 8 0 chr6 75454538 75454660 -74062377 + B4A SINE B4 1 123 -169 6 1160 3414 56 0 0 chr6 75454766 75455192 -74061845 - L1_Mm LINE L1 -1006 4877 4452 6 1160 4703 51 2 2 chr6 75455192 75455784 -74061253 + L1Md_F2 LINE L1 5991 6582 0 6 1160 297 161 49 0 chr6 75455845 75455926 -74061111 + G-rich Low_complexity Low_complexity 2 86 0 6 1160 246 369 83 15 chr6 75456872 75457004 -74060033 + L1M4b LINE L1 575 715 -6619 6 1160 878 28 0 9 chr6 75458330 75458440 -74058597 + (TTC)n Simple_repeat Simple_repeat 3 111 0 6 1160 3500 254 61 14 chr6 75458455 75458685 -74058352 - Lx6 LINE L1 -4 7456 7216 6 1160 387 0 0 0 chr6 75458685 75458728 -74058309 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1160 3500 254 61 14 chr6 75458728 75459385 -74057652 - Lx6 LINE L1 -245 7215 6528 6 1160 261 244 115 58 chr6 75459389 75459476 -74057561 - Lx6 LINE L1 -908 6552 6461 6 1160 273 353 135 17 chr6 75459739 75459922 -74057115 - Lx8 LINE L1 -2 7471 7264 6 1160 1756 70 4 0 chr6 75459922 75460149 -74056888 + L1Md_T LINE L1 6355 6582 0 6 1160 273 353 135 17 chr6 75460149 75460314 -74056723 - Lx8 LINE L1 -210 7263 7082 6 1160 23 0 0 0 chr6 75460398 75460421 -74056616 + AT_rich Low_complexity Low_complexity 1 23 0 6 1160 1836 206 18 8 chr6 75460685 75461071 -74055966 + ORR1B1 LTR MaLR 1 390 -4 6 1160 447 325 192 20 chr6 75461860 75462105 -74054932 + B4A SINE B4 2 288 -4 6 1160 213 108 0 0 chr6 75462179 75462216 -74054821 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1160 354 321 54 6 chr6 75462337 75462503 -74054534 - Lx6 LINE L1 -160 7300 7127 6 1160 2513 93 11 16 chr6 75463087 75463457 -74053580 - L1Md_F2 LINE L1 0 6582 6215 6 1160 243 309 35 49 chr6 75463476 75463619 -74053418 - MER5A1 DNA MER1_type -22 144 4 6 1160 686 316 42 41 chr6 75463698 75464033 -74053004 - MTE2b LTR MaLR 0 379 5 7 1160 399 300 0 11 chr6 75465078 75465169 -74051868 + B4A SINE B4 2 91 -201 7 1160 6968 56 14 0 chr6 75465169 75466056 -74050981 + L1Md_F3 LINE L1 5672 6570 -14 7 1160 236 281 36 24 chr6 75466133 75466217 -74050820 + B4A SINE B4 182 266 -26 7 1160 450 96 0 0 chr6 75466232 75466305 -74050732 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1160 229 434 54 11 chr6 75466527 75466711 -74050326 + B4 SINE B4 1 192 -100 7 1160 445 110 22 0 chr6 75466785 75466876 -74050161 + (CA)n Simple_repeat Simple_repeat 2 94 0 7 1160 28 29 0 0 chr6 75467002 75467037 -74050000 + AT_rich Low_complexity Low_complexity 1 35 0 7 1160 243 188 0 0 chr6 75467037 75467085 -74049952 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1160 222 37 0 0 chr6 75467153 75467180 -74049857 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 7 1160 5206 122 25 4 chr6 75467180 75467979 -74049058 - Lx3A LINE L1 -13 6968 6153 7 1160 233 381 28 14 chr6 75468084 75468225 -74048812 + L2a LINE L2 3284 3426 0 7 1160 355 61 47 35 chr6 75468232 75468317 -74048720 + (TTTG)n Simple_repeat Simple_repeat 3 88 0 7 1160 1149 83 0 0 chr6 75468317 75468462 -74048575 - B1_Mm SINE Alu 0 147 3 7 1160 421 349 57 76 chr6 75468599 75468810 -74048227 + B3A SINE B2 2 208 -8 7 1160 922 203 66 19 chr6 75469111 75469322 -74047715 - L1_Mur3 LINE L1 -22 5858 5638 7 1160 1592 292 35 21 chr6 75469334 75469721 -74047316 + Lx6 LINE L1 5904 6299 -1161 7 1160 369 0 0 0 chr6 75469721 75469762 -74047275 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1160 1592 292 35 21 chr6 75469762 75469885 -74047152 + Lx6 LINE L1 6300 6421 -1039 7 1160 621 67 29 0 chr6 75470387 75470491 -74046546 + (CA)n Simple_repeat Simple_repeat 1 107 0 7 1160 200 213 0 0 chr6 75471054 75471101 -74045936 + T-rich Low_complexity Low_complexity 1 47 0 7 1160 1043 92 0 7 chr6 75471102 75471245 -74045792 - B1_Mus1 SINE Alu -1 147 6 7 1160 538 304 92 40 chr6 75471589 75472045 -74044992 - L1MA4A LINE L1 -395 5908 5428 7 1160 183 80 0 0 chr6 75472045 75472070 -74044967 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 7 1160 538 304 92 40 chr6 75472070 75472092 -74044945 - L1MA4A LINE L1 -876 5427 5406 7 1160 692 271 45 15 chr6 75472184 75472295 -74044742 - RMER1B Other Other -5 1061 953 7 1160 297 0 0 0 chr6 75472295 75472328 -74044709 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1160 692 271 45 15 chr6 75472328 75472418 -74044619 - RMER1B Other Other -114 952 855 7 1160 1151 335 36 18 chr6 75473339 75473843 -74043194 + Lx8 LINE L1 6552 7064 -409 7 1160 492 18 0 0 chr6 75474066 75474123 -74042914 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 7 1160 1102 71 7 0 chr6 75474137 75474278 -74042759 + B1_Mus2 SINE Alu 3 144 -3 7 1160 423 0 0 0 chr6 75474278 75474325 -74042712 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1160 22 0 0 0 chr6 75474919 75474941 -74042096 + AT_rich Low_complexity Low_complexity 1 22 0 7 1160 7265 75 7 3 chr6 75474947 75476436 -74040601 + L1Md_F2 LINE L1 5047 6540 -42 7 1160 207 315 11 143 chr6 75476501 75476690 -74040347 - L2a LINE L2 0 3426 3263 7 1160 1586 212 98 34 chr6 75476719 75477133 -74039904 - RMER19B LTR ERVK -114 788 268 7 1160 1477 157 49 128 chr6 75477113 75477181 -74039856 - RMER19B LTR ERVK -585 317 258 7 1160 2604 69 0 9 chr6 75477181 75477516 -74039521 - IAPEY3_LTR LTR ERVK 0 332 1 7 1160 1477 157 49 128 chr6 75477516 75477791 -74039246 - RMER19B LTR ERVK -645 257 1 7 1160 617 265 15 0 chr6 75478259 75478391 -74038646 + B3A SINE B2 3 136 -62 7 1160 225 131 49 0 chr6 75480862 75480923 -74036114 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1160 225 391 11 0 chr6 75481871 75481958 -74035079 - PB1D10 SINE Alu -27 90 3 7 1160 2335 193 21 71 chr6 75482465 75483094 -74033943 - L1_Mur3 LINE L1 -1519 4361 3795 7 1160 384 22 0 0 chr6 75483285 75483330 -74033707 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1160 354 98 0 0 chr6 75483401 75483452 -74033585 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 7 1160 1894 221 67 2 chr6 75483452 75483873 -74033164 - Lx4A LINE L1 -18 7040 6593 7 1160 230 128 0 25 chr6 75483923 75483963 -74033074 - ORR1D-int LTR MaLR -109 1261 1223 7 1160 1375 347 46 27 chr6 75483958 75484699 -74032338 - MTE-int LTR MaLR -130 1450 4 7 1160 350 387 76 18 chr6 75484775 75484946 -74032091 - MTE-int LTR MaLR -832 748 568 7 1160 579 335 55 19 chr6 75485058 75485383 -74031654 + Lx7 LINE L1 6977 7313 -383 7 1160 541 92 10 10 chr6 75485415 75485514 -74031523 + (GA)n Simple_repeat Simple_repeat 2 100 0 7 1160 747 352 44 0 chr6 75486298 75486568 -74030469 - B4A SINE B4 -2 290 9 7 1160 604 199 42 7 chr6 75486780 75486922 -74030115 + URR1A DNA MER1_type 74 220 -6 7 1160 21 0 0 0 chr6 75487179 75487200 -74029837 + AT_rich Low_complexity Low_complexity 1 21 0 7 1160 2361 210 25 78 chr6 75487342 75487894 -74029143 + RLTR25A LTR ERVK 1 523 -580 7 1160 600 187 148 57 chr6 75487825 75488035 -74029002 + ORR1A3-int LTR MaLR 499 727 -1236 7 1160 1137 159 102 70 chr6 75487922 75488166 -74028871 + MT2B LTR ERVL 35 286 -315 7 1160 993 228 0 47 chr6 75488075 75488374 -74028663 + ORR1A3-int LTR MaLR 681 965 -998 7 1160 616 215 100 107 chr6 75488349 75488665 -74028372 + RLTR25A LTR ERVK 620 1028 0 7 1160 748 286 67 143 chr6 75489036 75489427 -74027610 + MTE2a LTR MaLR 1 361 -18 7 1160 198 91 0 0 chr6 75489605 75489638 -74027399 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1160 460 365 23 19 chr6 75491074 75491289 -74025748 + ID_B1 SINE B4 3 218 -6 7 1160 22 0 0 0 chr6 75491324 75491346 -74025691 + AT_rich Low_complexity Low_complexity 1 22 0 7 1160 432 0 0 0 chr6 75493028 75493076 -74023961 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1160 306 123 0 0 chr6 75493076 75493133 -74023904 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1160 378 0 0 0 chr6 75493591 75493633 -74023404 + (CTA)n Simple_repeat Simple_repeat 3 44 0 7 1160 242 275 12 0 chr6 75494139 75494219 -74022818 + L1MB1 LINE L1 6088 6168 0 7 1160 318 375 8 16 chr6 75494256 75494378 -74022659 + B3A SINE B2 5 125 -73 7 1160 204 40 0 0 chr6 75494392 75494417 -74022620 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1160 402 69 0 0 chr6 75494417 75494474 -74022563 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1160 472 245 124 64 chr6 75494561 75494759 -74022278 - Lx7 LINE L1 0 7696 7477 7 1160 663 37 0 0 chr6 75494759 75494841 -74022196 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 1160 472 245 124 64 chr6 75494841 75494956 -74022081 - Lx7 LINE L1 -220 7476 7364 7 1160 600 142 120 13 chr6 75494969 75495005 -74022032 + Lx2 LINE L1 6831 6866 -131 7 1160 183 80 0 0 chr6 75495005 75495030 -74022007 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 7 1160 600 142 120 13 chr6 75495030 75495143 -74021894 + Lx2 LINE L1 6867 6994 -3 7 1160 704 264 116 199 chr6 75495175 75495321 -74021716 - Lx7 LINE L1 -337 7359 7232 7 1160 180 0 0 0 chr6 75495321 75495341 -74021696 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 1160 704 264 116 199 chr6 75495341 75496020 -74021017 - Lx7 LINE L1 -465 7231 6602 7 1160 22 56 0 0 chr6 75496020 75496056 -74020981 + AT_rich Low_complexity Low_complexity 1 36 0 7 1160 1179 153 144 4 chr6 75496064 75496273 -74020764 + L1_Mur2 LINE L1 2637 2860 -3017 7 1160 189 0 0 0 chr6 75496273 75496294 -74020743 + (GAAA)n Simple_repeat Simple_repeat 4 24 0 7 1160 1179 153 144 4 chr6 75496294 75496340 -74020697 + L1_Mur2 LINE L1 2861 2927 -2950 7 1160 21 36 0 0 chr6 75496436 75496464 -74020573 + AT_rich Low_complexity Low_complexity 1 28 0 7 1160 26 50 0 0 chr6 75496573 75496613 -74020424 + AT_rich Low_complexity Low_complexity 1 40 0 7 2 6195 86 16 43 chr6 75496749 75497712 -74019325 + L1_Mus2 LINE L1 5660 6566 0 7 1161 1142 57 0 0 chr6 75497721 75497862 -74019175 + B1_Mm SINE Alu 1 141 -6 7 1161 663 78 0 0 chr6 75497869 75497959 -74019078 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 7 1161 294 361 32 24 chr6 75498053 75498178 -74018859 - B4A SINE B4 -64 228 103 7 1161 270 0 0 0 chr6 75499474 75499504 -74017533 + (TA)n Simple_repeat Simple_repeat 1 30 0 7 1161 267 122 0 0 chr6 75500336 75500385 -74016652 + (TAAAA)n Simple_repeat Simple_repeat 1 49 0 1 1161 2865 185 39 48 chr6 75500578 75501163 -74015874 - Lx2B LINE L1 0 7000 6421 2 1161 2963 156 14 41 chr6 75501171 75502019 -74015018 + Lx2B LINE L1 5228 6035 -965 3 1161 250 260 29 20 chr6 75502034 75502136 -74014901 - LTR37A LTR ERV1 0 426 324 4 1161 715 226 0 0 chr6 75502459 75502596 -74014441 + B1_Mur4 SINE Alu 5 141 -9 5 1161 830 131 125 0 chr6 75504000 75504160 -74012877 - Lx2 LINE L1 0 6997 6818 6 1161 560 342 130 42 chr6 75504254 75504538 -74012499 + MTEa LTR MaLR 8 316 -63 7 1161 197 167 43 22 chr6 75504957 75505049 -74011988 + (TCTG)n Simple_repeat Simple_repeat 1 94 0 8 1161 413 358 20 30 chr6 75505186 75505385 -74011652 - B3A SINE B2 0 198 2 9 1161 3556 212 49 34 chr6 75505816 75506781 -74010256 + RMER12 LTR ERVK 1 1179 -143 1 1161 313 312 10 51 chr6 75506919 75507017 -74010020 + RMER12 LTR ERVK 1227 1320 -2 1 1161 185 338 15 15 chr6 75507020 75507086 -74009951 - MIRb SINE MIR -139 129 64 1 1161 5380 135 82 3 chr6 75507298 75508202 -74008835 + L1_Mus4 LINE L1 5654 6628 -8 1 1161 300 358 9 9 chr6 75508278 75508385 -74008652 - B3A SINE B2 -91 107 1 1 1161 1040 287 131 27 chr6 75508946 75509543 -74007494 + Lx9 LINE L1 6949 7607 -37 1 1161 948 166 0 12 chr6 75509558 75509806 -74007231 + GA-rich Low_complexity Low_complexity 1 244 0 1 1161 4160 150 8 14 chr6 75510317 75511597 -74005440 + L1_Mur1 LINE L1 4636 5375 -511 1 1161 36248 67 5 3 chr6 75511607 75517739 -73999298 + L1Md_F3 LINE L1 463 6563 -21 1 1161 7106 164 44 8 chr6 75517749 75519315 -73997722 + Lx3C LINE L1 5359 6976 0 1 1161 23 0 0 0 chr6 75519421 75519444 -73997593 + AT_rich Low_complexity Low_complexity 1 23 0 1 1161 22 35 0 0 chr6 75520030 75520059 -73996978 + AT_rich Low_complexity Low_complexity 1 29 0 2 1161 429 268 73 35 chr6 75520474 75520760 -73996277 - Lx7 LINE L1 0 7696 7400 2 1161 21 36 0 0 chr6 75522796 75522824 -73994213 + AT_rich Low_complexity Low_complexity 1 28 0 2 1161 30 59 0 0 chr6 75524124 75524175 -73992862 + AT_rich Low_complexity Low_complexity 1 51 0 2 1161 417 266 0 9 chr6 75524178 75524288 -73992749 - RMER1B Other Other -15 1051 943 2 1161 873 176 8 1 chr6 75524295 75524463 -73992574 - RMER1B Other Other -187 879 730 2 1161 332 351 98 17 chr6 75524463 75524637 -73992400 - MTEa LTR MaLR -186 193 6 2 1161 577 312 48 54 chr6 75525509 75525824 -73991213 + Lx6 LINE L1 7122 7434 -26 2 1161 607 86 43 14 chr6 75526569 75526710 -73990327 + (TA)n Simple_repeat Simple_repeat 1 145 0 2 1161 522 0 0 0 chr6 75527952 75528010 -73989027 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1161 545 211 41 18 chr6 75528139 75528308 -73988729 - Lx7 LINE L1 -151 7545 7373 2 1161 1730 143 83 7 chr6 75528317 75528633 -73988404 - IAPEY3_LTR LTR ERVK 0 475 1 3 1161 2407 231 11 67 chr6 75528642 75529365 -73987672 - Lx6 LINE L1 -1567 5893 5209 3 1161 360 0 0 0 chr6 75529365 75529405 -73987632 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1161 375 41 0 0 chr6 75529496 75529545 -73987492 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1161 837 286 107 21 chr6 75529695 75530031 -73987006 + ORR1D2 LTR MaLR 3 367 -3 3 1161 1353 216 14 14 chr6 75530173 75530460 -73986577 + Lx4B LINE L1 6617 6903 -155 3 1161 623 13 13 0 chr6 75531044 75531120 -73985917 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 3 1161 3063 220 64 17 chr6 75531157 75531859 -73985178 - Lx4B LINE L1 -25 7033 6299 3 1161 22 0 0 0 chr6 75532234 75532256 -73984781 + AT_rich Low_complexity Low_complexity 1 22 0 3 1161 272 85 71 41 chr6 75532499 75532538 -73984499 + A-rich Low_complexity Low_complexity 2 44 0 3 1161 423 0 0 0 chr6 75532538 75532585 -73984452 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1161 272 85 71 41 chr6 75532585 75532643 -73984394 + A-rich Low_complexity Low_complexity 45 101 0 4 1161 423 38 0 0 chr6 75532665 75532718 -73984319 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1161 210 127 46 31 chr6 75533672 75533737 -73983300 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1161 1056 307 22 11 chr6 75534030 75534396 -73982641 - ORR1D2 LTR MaLR 0 370 1 4 1161 941 63 0 16 chr6 75534490 75534619 -73982418 + L1_Mus2 LINE L1 6239 6365 -201 4 1161 1777 99 83 24 chr6 75534619 75534909 -73982128 + IAPLTR2b LTR ERVK 1 307 -20 4 1161 1417 77 0 88 chr6 75534926 75535153 -73981884 + L1_Mus2 LINE L1 6360 6566 0 4 1161 3686 129 52 78 chr6 75535717 75536488 -73980549 + RMER17A LTR ERVK 1 751 0 4 1161 278 50 25 0 chr6 75537415 75537455 -73979582 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1161 522 46 0 0 chr6 75538429 75538494 -73978543 + (T)n Simple_repeat Simple_repeat 1 65 0 4 1161 1009 142 0 0 chr6 75538494 75538642 -73978395 - B1_Mus1 SINE Alu 0 148 1 5 1161 197 33 0 32 chr6 75539476 75539507 -73977530 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 1161 553 250 16 16 chr6 75539573 75539699 -73977338 - B1_Mm SINE Alu -21 126 1 5 1161 414 283 141 25 chr6 75539836 75539999 -73977038 - B3A SINE B2 -16 182 1 5 1161 229 94 37 19 chr6 75540593 75540647 -73976390 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 5 1161 565 312 44 22 chr6 75541061 75541290 -73975747 - Lx8 LINE L1 -253 7220 6987 5 1161 21 0 0 0 chr6 75541529 75541550 -73975487 + AT_rich Low_complexity Low_complexity 1 21 0 5 1161 230 98 19 56 chr6 75541803 75541857 -73975180 + A-rich Low_complexity Low_complexity 2 53 0 5 1161 347 107 17 0 chr6 75541866 75541935 -73975102 - Lx LINE L1 -1063 5995 5923 5 1161 313 127 18 0 chr6 75541916 75541971 -73975066 + Lx2 LINE L1 6929 6984 -13 5 1161 369 0 0 0 chr6 75541971 75542012 -73975025 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1161 244 330 110 0 chr6 75543585 75543703 -73973334 + MLT1A1 LTR MaLR 56 186 -222 6 1161 406 256 58 25 chr6 75543854 75543974 -73973063 + ERVL-B4-int LTR ERVL 1853 1976 -3738 6 1161 1406 219 58 15 chr6 75543990 75544351 -73972686 - ORR1C2 LTR MaLR 0 394 25 6 1161 217 333 24 47 chr6 75544402 75544487 -73972550 - RSINE1 SINE B4 -42 123 41 6 1161 1050 348 28 25 chr6 75544824 75545423 -73971614 + ERVL-B4-int LTR ERVL 2337 2937 -2777 6 1161 469 354 114 14 chr6 75545455 75545805 -73971232 + ERVL-B4-int LTR ERVL 3001 3385 -2329 6 1161 4362 27 0 2 chr6 75545894 75546407 -73970630 - L1Md_A LINE L1 0 6582 6071 6 1161 3348 37 46 2 chr6 75546407 75546839 -73970198 + L1Md_A LINE L1 424 874 -5850 6 1161 662 323 0 0 chr6 75546855 75547022 -73970015 + MTEa LTR MaLR 158 324 -55 6 1161 601 335 55 7 chr6 75547270 75547579 -73969458 + ERVL-B4-int LTR ERVL 3644 3967 -1790 6 1161 557 194 31 0 chr6 75547636 75547734 -73969303 + B1_Mur3 SINE Alu 3 103 -46 6 1161 284 340 10 0 chr6 75547813 75547913 -73969124 + ERVL-B4-int LTR ERVL 4177 4277 -1484 6 1161 266 326 47 13 chr6 75548047 75548196 -73968841 + ERVL-B4-int LTR ERVL 4329 4482 -1232 6 1161 778 218 51 5 chr6 75548429 75548646 -73968391 - Lx5 LINE L1 -995 6055 5829 6 1161 3685 262 50 7 chr6 75548647 75549553 -73967484 + Lx5 LINE L1 6100 7044 -6 6 1161 32 26 0 0 chr6 75549558 75549597 -73967440 + AT_rich Low_complexity Low_complexity 1 39 0 7 1161 504 48 0 0 chr6 75549876 75549939 -73967098 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 1161 394 295 52 32 chr6 75549980 75550134 -73966903 + ERVL-B4-int LTR ERVL 5142 5298 -416 6 1161 22 35 0 0 chr6 75550166 75550195 -73966842 + AT_rich Low_complexity Low_complexity 1 29 0 7 1161 216 0 0 0 chr6 75550216 75550240 -73966797 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1161 765 280 51 95 chr6 75550612 75550928 -73966109 + ORR1E LTR MaLR 16 317 -42 7 1161 1699 235 48 11 chr6 75551056 75551516 -73965521 + Lx2B LINE L1 6524 7000 0 7 1161 25 0 0 0 chr6 75551524 75551549 -73965488 + AT_rich Low_complexity Low_complexity 1 25 0 7 1161 194 62 31 0 chr6 75553278 75553310 -73963727 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1161 263 343 0 0 chr6 75553650 75553755 -73963282 + CT-rich Low_complexity Low_complexity 2 106 0 7 1161 861 171 0 0 chr6 75553774 75553949 -73963088 + CT-rich Low_complexity Low_complexity 2 176 0 7 1161 207 0 0 0 chr6 75553952 75553975 -73963062 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 1161 2685 208 64 4 chr6 75553999 75554559 -73962478 - Lx4B LINE L1 -48 7010 6417 8 1161 982 76 7 7 chr6 75554604 75554750 -73962287 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 8 1161 1502 195 30 7 chr6 75554768 75555072 -73961965 - Lx LINE L1 -9 6645 6335 8 1161 1930 177 219 54 chr6 75555075 75555523 -73961514 - RMER19B LTR ERVK -380 522 1 8 1161 1300 201 19 23 chr6 75555523 75555783 -73961254 - Lx5 LINE L1 -653 6397 6139 8 1161 2167 182 25 17 chr6 75555774 75556256 -73960781 + Lx5 LINE L1 5525 6018 -1032 8 1161 490 250 19 83 chr6 75556268 75556425 -73960612 - B1_Mur3 SINE Alu 0 149 3 8 1161 242 0 61 0 chr6 75556426 75556459 -73960578 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 8 1161 221 200 53 0 chr6 75556466 75556561 -73960476 + T-rich Low_complexity Low_complexity 5 104 0 8 1161 357 322 82 82 chr6 75556666 75556947 -73960090 + B4 SINE B4 2 282 -10 8 1161 282 154 25 0 chr6 75557126 75557184 -73959853 + Lx5 LINE L1 6811 6893 -165 8 1161 3359 176 126 71 chr6 75557395 75558245 -73958792 - RMER19B LTR ERVK 0 902 6 8 1161 223 231 19 0 chr6 75558264 75558316 -73958721 + (TTA)n Simple_repeat Simple_repeat 1 53 0 9 1161 284 385 66 20 chr6 75558328 75558479 -73958558 - RSINE1 SINE B4 0 165 8 9 1161 795 75 0 0 chr6 75558482 75558589 -73958448 + (TC)n Simple_repeat Simple_repeat 2 108 0 9 1161 598 25 25 0 chr6 75558589 75558669 -73958368 + (TTC)n Simple_repeat Simple_repeat 2 83 0 9 1161 23 0 0 0 chr6 75558789 75558812 -73958225 + AT_rich Low_complexity Low_complexity 1 23 0 9 1161 729 300 85 37 chr6 75560456 75560562 -73956475 - MTEb LTR MaLR -13 366 265 9 1161 3041 69 5 2 chr6 75560562 75560957 -73956080 + MTA_Mm LTR MaLR 1 396 0 9 1161 729 300 85 37 chr6 75560957 75561120 -73955917 - MTEb LTR MaLR -115 264 84 9 1161 4074 48 0 0 chr6 75561179 75561661 -73955376 - LTRIS_Mm LTR ERV1 0 482 1 9 1161 302 220 78 29 chr6 75561703 75561806 -73955231 - MTEb LTR MaLR -2 377 270 9 1161 2203 231 39 168 chr6 75562158 75563887 -73953150 + L1_Mur2 LINE L1 889 2389 -3488 9 1161 512 376 44 91 chr6 75564160 75564458 -73952579 - B4A SINE B4 0 292 9 1 1161 3156 89 12 71 chr6 75564667 75565175 -73951862 + L1_Mus3 LINE L1 6161 6638 0 1 1161 1445 109 65 32 chr6 75566050 75566296 -73950741 - L1Md_F2 LINE L1 -2 6580 6327 1 1161 305 20 353 0 chr6 75566297 75566348 -73950689 + L1Md_F2 LINE L1 6272 6340 -242 1 1161 7928 42 2 2 chr6 75566359 75567317 -73949720 - L1Md_F2 LINE L1 -2 6580 5623 1 1161 11458 64 1 1 chr6 75567316 75568802 -73948235 + L1Md_F2 LINE L1 4096 5581 -302 1 1161 525 294 0 0 chr6 75569366 75569485 -73947552 - B1_Mur4 SINE Alu -31 119 1 1 1161 223 404 43 0 chr6 75569722 75569816 -73947221 - B1F SINE Alu -51 98 1 1 1161 399 365 49 15 chr6 75570312 75570515 -73946522 + MLT1H2 LTR MaLR 18 227 -262 1 1161 612 0 0 0 chr6 75570617 75570685 -73946352 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 1 1161 1223 304 102 8 chr6 75570822 75571291 -73945746 - RMER1A Other Other -571 459 32 1 1161 1118 37 0 0 chr6 75571495 75571631 -73945406 + B1_Mus2 SINE Alu 1 136 -11 1 1161 657 0 0 0 chr6 75571631 75571704 -73945333 + (CAAAA)n Simple_repeat Simple_repeat 5 77 0 1 1161 3846 131 5 107 chr6 75571851 75572582 -73944455 - L1_Mm LINE L1 -870 5013 4358 1 1161 3447 36 80 20 chr6 75572582 75573030 -73944007 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1161 3846 131 5 107 chr6 75573030 75573067 -73943970 - L1_Mm LINE L1 -1526 4357 4323 1 1161 2950 121 7 2 chr6 75573067 75573516 -73943521 + L1_Mus3 LINE L1 6184 6634 -4 1 1161 1606 216 87 10 chr6 75573533 75573750 -73943287 - BGLII_B LTR ERVK -8 433 212 1 1161 2904 101 5 2 chr6 75573750 75574148 -73942889 - MTB LTR MaLR -1 399 1 1 1161 1606 216 87 10 chr6 75574148 75574332 -73942705 - BGLII_B LTR ERVK -230 211 1 1 1161 279 189 85 0 chr6 75574478 75574584 -73942453 + (TCTA)n Simple_repeat Simple_repeat 2 116 0 1 1161 222 37 0 0 chr6 75574614 75574641 -73942396 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1161 351 65 0 0 chr6 75575031 75575077 -73941960 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1 1161 528 56 0 0 chr6 75575191 75575263 -73941774 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1161 265 284 153 10 chr6 75575313 75575516 -73941521 - L1MC LINE L1 -1100 5046 4815 1 1161 270 0 0 0 chr6 75576796 75576826 -73940211 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 1161 360 59 0 0 chr6 75577086 75577137 -73939900 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1161 396 0 0 0 chr6 75577318 75577362 -73939675 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1161 1952 148 6 16 chr6 75577362 75577685 -73939352 + ORR1A2 LTR MaLR 8 327 0 1 1161 4734 184 57 57 chr6 75577685 75579174 -73937863 + ORR1A2-int LTR MaLR 1 1963 0 1 1161 1178 212 4 13 chr6 75579174 75579402 -73937635 + ORR1A2 LTR MaLR 6 231 -96 1 1161 686 321 49 57 chr6 75579400 75579664 -73937373 - ORR1D2 LTR MaLR -76 294 33 1 1161 690 307 5 14 chr6 75581890 75582105 -73934932 - B3 SINE B2 0 216 4 1 1161 25 0 0 0 chr6 75582113 75582138 -73934899 + AT_rich Low_complexity Low_complexity 1 25 0 1 1161 7776 59 5 6 chr6 75582463 75583527 -73933510 - L1Md_F2 LINE L1 -2 6580 5519 1 1161 4798 284 97 28 chr6 75583792 75584422 -73932615 - Lx6 LINE L1 -2 7458 6778 1 1161 1087 82 7 0 chr6 75584422 75584568 -73932469 - B1_Mus1 SINE Alu 0 148 2 1 1161 4798 284 97 28 chr6 75584568 75585630 -73931407 - Lx6 LINE L1 -683 6777 5650 1 1161 534 178 49 29 chr6 75585625 75585763 -73931274 + Lx6 LINE L1 5515 5662 -1798 1 1161 327 85 0 0 chr6 75585932 75585979 -73931058 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1161 500 301 56 73 chr6 75586018 75586197 -73930840 - B3A SINE B2 -6 192 17 1 1161 261 0 0 0 chr6 75586763 75586792 -73930245 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1161 399 325 154 28 chr6 75587621 75587979 -73929058 + Tigger6b DNA MER2_type 1 403 -1194 1 1161 462 329 28 7 chr6 75588068 75588209 -73928828 + B1F SINE Alu 6 149 0 1 1161 782 190 203 16 chr6 75588450 75588632 -73928405 + B3 SINE B2 1 216 0 1 1161 498 33 0 0 chr6 75589312 75589372 -73927665 + (TAA)n Simple_repeat Simple_repeat 2 61 0 1 1161 631 250 61 28 chr6 75589948 75590129 -73926908 - B3A SINE B2 0 198 12 1 1161 277 309 6 18 chr6 75590698 75590863 -73926174 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 1 1161 472 353 73 26 chr6 75591374 75591566 -73925471 - B3A SINE B2 -15 201 1 1 1161 234 189 31 10 chr6 75592394 75592490 -73924547 + CT-rich Low_complexity Low_complexity 4 101 0 1 1161 203 362 76 22 chr6 75592490 75592713 -73924324 + L2 LINE L2 2470 2704 -715 1 1161 205 318 11 45 chr6 75593334 75593423 -73923614 - L3 LINE CR1 -294 4195 4110 1 1161 920 219 185 58 chr6 75593489 75593852 -73923185 - RLTRETN_Mm LTR ERVK 0 409 1 1 1161 496 53 12 73 chr6 75593854 75593936 -73923101 - ETnERV2-int LTR ERVK -3 7403 7327 1 1161 637 201 116 63 chr6 75593940 75594253 -73922784 - RLTR13B1 LTR ERVK -371 531 153 1 1161 5270 158 8 7 chr6 75594253 75594540 -73922497 - ETnERV2-int LTR ERVK -203 7203 6916 1 1161 3653 89 32 8 chr6 75594540 75594733 -73922304 - RLTR1B LTR ERV1 0 512 321 1 1161 219 36 0 0 chr6 75594733 75594761 -73922276 + (CTGGGG)n Simple_repeat Simple_repeat 1 28 0 1 1161 3653 89 32 8 chr6 75594761 75595067 -73921970 - RLTR1B LTR ERV1 -192 320 3 1 1161 5270 158 8 7 chr6 75595067 75595550 -73921487 - ETnERV2-int LTR ERVK -491 6915 6432 1 1161 32685 81 12 1 chr6 75595553 75601669 -73915368 - L1Md_F2 LINE L1 -2 6580 410 1 1161 2343 177 9 30 chr6 75601686 75602367 -73914670 - ETnERV2-int LTR ERVK -1703 3141 2736 1 1161 21 0 0 0 chr6 75602375 75602396 -73914641 + AT_rich Low_complexity Low_complexity 1 21 0 1 1161 323 252 79 7 chr6 75602717 75602869 -73914168 - RCHARR1 DNA MER1_type -160 814 652 1 1161 387 269 18 9 chr6 75602880 75602989 -73914048 + RCHARR1 DNA MER1_type 518 627 -347 1 1161 413 277 62 31 chr6 75603019 75603162 -73913875 - B1F SINE Alu 0 149 3 1 1161 329 327 10 10 chr6 75603390 75603492 -73913545 + RSINE1 SINE B4 32 133 -32 1 1161 257 238 12 0 chr6 75603512 75603596 -73913441 + A-rich Low_complexity Low_complexity 4 88 0 1 1161 238 296 53 30 chr6 75603602 75603744 -73913293 - MIR SINE MIR -93 169 32 1 1161 22 80 0 0 chr6 75604855 75604905 -73912132 + AT_rich Low_complexity Low_complexity 1 50 0 1 1161 557 147 9 0 chr6 75605088 75605197 -73911840 + GA-rich Low_complexity Low_complexity 1 110 0 1 1161 522 315 61 14 chr6 75605215 75605363 -73911674 - B3A SINE B2 -43 155 1 1 1161 1836 204 54 3 chr6 75605583 75605654 -73911383 - MTC LTR MaLR 0 421 352 1 1161 180 0 0 0 chr6 75605654 75605674 -73911363 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1161 297 0 0 0 chr6 75605674 75605707 -73911330 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1161 1836 204 54 3 chr6 75605707 75606023 -73911014 - MTC LTR MaLR -70 351 15 1 1161 324 0 0 0 chr6 75606534 75606570 -73910467 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1161 603 40 0 0 chr6 75607001 75607075 -73909962 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 1 1161 336 358 63 42 chr6 75607077 75607220 -73909817 - RSINE1 SINE B4 -17 148 3 1 1161 639 337 16 11 chr6 75607367 75607550 -73909487 + B3 SINE B2 1 184 -32 1 1161 387 0 0 0 chr6 75607566 75607609 -73909428 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1161 612 40 0 0 chr6 75607612 75607687 -73909350 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 1161 290 115 19 0 chr6 75608460 75608512 -73908525 + (CACAA)n Simple_repeat Simple_repeat 2 54 0 1 1161 186 43 0 0 chr6 75608763 75608786 -73908251 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1161 453 297 20 10 chr6 75608841 75608943 -73908094 - B4 SINE B4 -23 269 167 1 1161 380 191 11 0 chr6 75609314 75609408 -73907629 + (TTG)n Simple_repeat Simple_repeat 2 96 0 1 1161 516 319 73 100 chr6 75609576 75609876 -73907161 + B4A SINE B4 1 292 0 1 1161 200 214 24 0 chr6 75609877 75609919 -73907118 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1161 504 0 0 0 chr6 75609921 75609977 -73907060 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1161 213 225 0 0 chr6 75610550 75610590 -73906447 + A-rich Low_complexity Low_complexity 3 42 0 1 1161 326 291 52 59 chr6 75610943 75611078 -73905959 + B3A SINE B2 66 199 -17 1 1161 243 194 0 16 chr6 75611495 75611558 -73905479 + A-rich Low_complexity Low_complexity 4 65 0 1 1161 416 299 76 7 chr6 75611749 75611894 -73905143 + Lx8 LINE L1 6851 7005 -468 1 1161 727 241 76 94 chr6 75612197 75612346 -73904691 + Lx7 LINE L1 7373 7517 -179 1 1161 270 81 0 0 chr6 75612346 75612383 -73904654 + (CATAT)n Simple_repeat Simple_repeat 2 38 0 1 1161 727 241 76 94 chr6 75612383 75612563 -73904474 + Lx7 LINE L1 7518 7695 -1 1 1161 744 310 56 22 chr6 75613243 75613510 -73903527 + B4A SINE B4 3 278 -14 1 1161 25 65 0 0 chr6 75613582 75613628 -73903409 + AT_rich Low_complexity Low_complexity 1 46 0 1 1161 3266 102 12 20 chr6 75614046 75614556 -73902481 - L1_Mus4 LINE L1 -8 6628 6123 1 1161 1330 311 28 37 chr6 75614764 75615301 -73901736 - Lx9 LINE L1 -238 7406 6875 1 1161 21 0 0 0 chr6 75615638 75615659 -73901378 + AT_rich Low_complexity Low_complexity 1 21 0 1 1161 1145 60 0 0 chr6 75615659 75615808 -73901229 - L1_Mus1 LINE L1 0 6567 6419 1 1161 51 51 0 0 chr6 75617629 75617708 -73899329 + AT_rich Low_complexity Low_complexity 1 79 0 1 1161 649 372 28 16 chr6 75618402 75618656 -73898381 + B4A SINE B4 36 292 0 1 1161 24 53 0 0 chr6 75618728 75618766 -73898271 + AT_rich Low_complexity Low_complexity 1 38 0 1 1161 552 30 0 0 chr6 75618842 75618908 -73898129 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 1 1161 478 365 43 20 chr6 75619723 75620028 -73897009 + Kanga1 DNA Tc2 273 584 -1161 1 1161 362 323 56 19 chr6 75621158 75621319 -73895718 + MLT1A LTR MaLR 199 365 -9 1 1161 881 321 40 10 chr6 75621464 75621867 -73895170 + Lx8 LINE L1 7057 7471 -2 1 1161 306 351 161 69 chr6 75622210 75622470 -73894567 + B4 SINE B4 9 292 0 1 1161 214 348 86 9 chr6 75622624 75622740 -73894297 + MIRb SINE MIR 28 152 -116 1 1161 4754 164 73 19 chr6 75622862 75623783 -73893254 + Lx2 LINE L1 6021 6991 -6 1 1161 194 264 37 19 chr6 75623800 75623854 -73893183 - MER5A DNA MER1_type -121 68 14 2 1161 25 0 0 0 chr6 75624196 75624221 -73892816 + AT_rich Low_complexity Low_complexity 1 25 0 2 1161 311 272 126 53 chr6 75624357 75624675 -73892362 + L1MB7 LINE L1 5530 5870 -314 2 1161 248 302 116 78 chr6 75624862 75624991 -73892046 + ID_B1 SINE B4 90 223 -1 2 1161 457 267 90 43 chr6 75625112 75625323 -73891714 - Lx6 LINE L1 -26 7434 7214 2 1161 1728 261 96 35 chr6 75625339 75625973 -73891064 - Lx5 LINE L1 -739 6311 5639 2 1161 1131 294 59 3 chr6 75626010 75626314 -73890723 - Lx6 LINE L1 -168 7292 6972 2 1161 22 35 0 0 chr6 75626450 75626479 -73890558 + AT_rich Low_complexity Low_complexity 1 29 0 2 1161 1454 140 0 49 chr6 75626653 75626938 -73890099 + Lx LINE L1 6384 6654 0 2 1161 802 251 82 146 chr6 75627351 75627729 -73889308 + MTE2a LTR MaLR 6 359 -20 2 145 447 99 0 0 chr6 75628422 75628553 -73888484 - L1Md_F2 LINE L1 0 6582 6502 2 1162 513 313 130 35 chr6 75628575 75628940 -73888097 + RMER1B Other Other 49 756 -586 2 1162 1801 313 18 9 chr6 75629018 75629566 -73887471 + RMER1C Other Other 386 938 -404 2 1162 2079 103 29 26 chr6 75629647 75629987 -73887050 - L1Md_F2 LINE L1 0 6582 6242 2 1162 497 151 11 11 chr6 75629987 75630066 -73886971 + RMER1C Other Other 1128 1207 -135 2 1162 226 156 0 22 chr6 75630066 75630112 -73886925 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 2 1162 238 94 185 19 chr6 75630167 75630221 -73886816 + RMER1C Other Other 1262 1324 -18 2 1162 242 254 0 0 chr6 75630608 75630667 -73886370 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1162 939 266 164 39 chr6 75630885 75631245 -73885792 - MTD LTR MaLR -14 405 1 2 1162 496 306 169 19 chr6 75631675 75631719 -73885318 - MTE2a LTR MaLR -3 376 316 2 1162 908 101 0 7 chr6 75631719 75631858 -73885179 + (GGAA)n Simple_repeat Simple_repeat 3 140 0 2 1162 497 331 141 42 chr6 75631858 75632099 -73884938 - MTE2a LTR MaLR -64 315 50 2 1162 288 53 0 0 chr6 75632139 75632177 -73884860 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1162 517 376 6 6 chr6 75632177 75632343 -73884694 - B3A SINE B2 -32 166 1 2 1162 396 403 16 0 chr6 75632921 75633050 -73883987 + B3A SINE B2 19 149 -49 2 1162 1432 143 0 119 chr6 75633305 75633607 -73883430 - RLTR22_Mus LTR ERVK 0 1808 1543 2 1162 5337 110 10 6 chr6 75633810 75634624 -73882413 - RLTR22_Mus LTR ERVK -991 817 1 2 1162 531 0 0 0 chr6 75635303 75635362 -73881675 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1162 1675 140 0 11 chr6 75635362 75635622 -73881415 - Lx3B LINE L1 -160 6813 6557 2 1162 5175 118 39 33 chr6 75635620 75635830 -73881207 + Lx3B LINE L1 5698 5907 -1066 2 1162 261 0 0 0 chr6 75635830 75635859 -73881178 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2 1162 5175 118 39 33 chr6 75635859 75636523 -73880514 + Lx3B LINE L1 5908 6576 -397 2 1162 556 347 33 9 chr6 75637910 75638125 -73878912 + ID_B1 SINE B4 3 222 -2 2 1162 1621 222 16 11 chr6 75638665 75639030 -73878007 + Lx6 LINE L1 5426 5792 -88 2 1162 2683 299 40 60 chr6 75639029 75639830 -73877207 + RMER1C Other Other 217 1042 -300 2 1162 5158 134 17 1 chr6 75639830 75640660 -73876377 + Lx2 LINE L1 6154 6996 -1 2 1162 2683 294 36 73 chr6 75640660 75641017 -73876020 + RMER1C Other Other 1043 1340 -2 2 1162 2955 292 35 51 chr6 75641018 75641981 -73875056 + Lx6 LINE L1 5781 6728 -732 2 1162 25 31 0 0 chr6 75643003 75643035 -73874002 + AT_rich Low_complexity Low_complexity 1 32 0 2 1162 200 229 0 20 chr6 75643102 75643151 -73873886 + GA-rich Low_complexity Low_complexity 4 51 0 2 1162 275 298 119 65 chr6 75643155 75643356 -73873681 + RLTR25A LTR ERVK 892 1103 0 2 1162 381 290 9 0 chr6 75643395 75643502 -73873535 + Lx6 LINE L1 6787 6894 -566 2 1162 695 109 12 35 chr6 75643503 75643674 -73873363 + (CAGAGA)n Simple_repeat Simple_repeat 2 168 0 2 1162 483 183 0 0 chr6 75643685 75643816 -73873221 + GA-rich Low_complexity Low_complexity 2 132 0 2 1162 1688 285 72 10 chr6 75643819 75644400 -73872637 + Lx6 LINE L1 6840 7456 -4 2 1162 1151 48 7 0 chr6 75644672 75644817 -73872220 + B1_Mus2 SINE Alu 1 146 -1 2 1162 199 50 49 24 chr6 75644818 75644859 -73872178 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 2 1162 4841 100 3 0 chr6 75645053 75645730 -73871307 - L1_Mus3 LINE L1 -2 6636 5958 2 1162 1170 181 9 4 chr6 75645728 75645956 -73871081 + L1_Mus3 LINE L1 6402 6630 -8 2 1162 239 287 137 16 chr6 75646099 75646223 -73870814 + MLT2B4 LTR ERVL 276 414 -142 2 1162 1434 50 0 0 chr6 75646325 75646507 -73870530 + L1Md_T LINE L1 6401 6582 0 2 1162 435 38 0 0 chr6 75647581 75647634 -73869403 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1162 518 316 37 2 chr6 75647672 75647955 -73869082 - L1MA4 LINE L1 -368 5932 5641 2 1162 2024 263 75 9 chr6 75647989 75648545 -73868492 - Lx2B LINE L1 -20 6980 6388 2 1162 23 0 0 0 chr6 75649300 75649323 -73867714 + AT_rich Low_complexity Low_complexity 1 23 0 2 1162 681 225 150 19 chr6 75649401 75649614 -73867423 + Lx9 LINE L1 6802 7042 -602 2 1162 225 71 86 0 chr6 75649614 75649684 -73867353 + (CAAA)n Simple_repeat Simple_repeat 1 76 0 2 1162 21 36 0 0 chr6 75649961 75649989 -73867048 + AT_rich Low_complexity Low_complexity 1 28 0 2 1162 1789 340 99 7 chr6 75650566 75651282 -73865755 - MTE-int LTR MaLR -257 1323 542 2 1162 1184 299 35 27 chr6 75651303 75651708 -73865329 - MTE-int LTR MaLR -1135 445 38 2 1162 3081 64 5 0 chr6 75651710 75652118 -73864919 - L1Md_F2 LINE L1 -1 6581 6172 2 1162 1969 210 16 3 chr6 75652308 75652695 -73864342 - ORR1B1 LTR MaLR -2 392 1 2 1162 26 0 0 0 chr6 75652697 75652723 -73864314 + AT_rich Low_complexity Low_complexity 1 26 0 2 1162 211 146 0 24 chr6 75652890 75652932 -73864105 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1162 4535 155 42 19 chr6 75653023 75654061 -73862976 + L1VL1 LINE L1 210 1275 -2423 2 1162 9126 130 26 63 chr6 75654056 75654883 -73862154 + L1_Mus3 LINE L1 4268 5099 -784 2 1162 4705 2 0 0 chr6 75654883 75655403 -73861634 + L1Md_A LINE L1 6063 6582 0 2 1162 9126 113 56 33 chr6 75655403 75656945 -73860092 + L1_Mus3 LINE L1 5100 6631 -7 2 1162 249 33 0 0 chr6 75657109 75657139 -73859898 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1162 453 362 14 0 chr6 75657872 75658013 -73859024 + MIRb SINE MIR 5 147 -121 2 1162 289 206 91 13 chr6 75658018 75658111 -73858926 - MIRb SINE MIR -6 262 160 2 1162 21 0 0 0 chr6 75658677 75658698 -73858339 + AT_rich Low_complexity Low_complexity 1 21 0 2 1162 298 319 94 9 chr6 75659079 75659291 -73857746 - MER92B LTR ERV1 -322 314 85 2 1162 23 0 0 0 chr6 75659671 75659694 -73857343 + AT_rich Low_complexity Low_complexity 1 23 0 2 1162 23 33 0 0 chr6 75659719 75659749 -73857288 + AT_rich Low_complexity Low_complexity 1 30 0 2 1162 21 0 0 0 chr6 75659855 75659876 -73857161 + AT_rich Low_complexity Low_complexity 1 21 0 2 1162 207 191 0 0 chr6 75660131 75660178 -73856859 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1162 352 349 103 32 chr6 75660260 75660601 -73856436 - L1M2 LINE L1 -3515 2628 2264 2 1162 1131 261 36 87 chr6 75660651 75661179 -73855858 + L1_Rod LINE L1 377 877 -6295 2 1162 4777 97 0 12 chr6 75661738 75662414 -73854623 - Lx3_Mus LINE L1 0 7009 6342 2 1162 468 356 20 20 chr6 75663977 75664172 -73852865 + MTD LTR MaLR 9 203 -216 2 1162 290 308 52 31 chr6 75664223 75664414 -73852623 + L1_Rod LINE L1 116 310 -6862 2 1162 264 309 0 96 chr6 75664451 75664555 -73852482 + RMER12 LTR ERVK 749 842 -480 2 1162 317 234 69 0 chr6 75664575 75664720 -73852317 + Lx9 LINE L1 7486 7640 -4 2 1162 523 264 162 6 chr6 75664799 75664978 -73852059 + MTD LTR MaLR 199 405 -14 2 1162 1150 62 7 0 chr6 75665426 75665572 -73851465 + B1_Mm SINE Alu 1 147 0 2 1162 185 0 40 0 chr6 75665575 75665600 -73851437 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1162 823 209 66 0 chr6 75665924 75666106 -73850931 + Lx6 LINE L1 6685 6878 -582 2 1162 1117 279 19 111 chr6 75666126 75666287 -73850750 + Lx6 LINE L1 6963 7115 -345 2 1162 490 13 63 0 chr6 75666287 75666366 -73850671 + (TA)n Simple_repeat Simple_repeat 1 84 0 2 1162 1117 279 19 111 chr6 75666366 75666683 -73850354 + Lx6 LINE L1 7116 7397 -63 2 1162 267 284 31 21 chr6 75666740 75666837 -73850200 + Lx4B LINE L1 6957 7054 -4 2 1162 421 265 58 52 chr6 75668170 75668240 -73848797 + MTD LTR MaLR 175 247 -172 2 1162 378 0 0 0 chr6 75668240 75668282 -73848755 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1162 421 265 58 52 chr6 75668282 75668366 -73848671 + MTD LTR MaLR 248 330 -89 2 1162 2492 28 0 0 chr6 75668457 75668748 -73848289 - L1Md_F2 LINE L1 -690 5892 5602 2 1162 5331 63 6 0 chr6 75668748 75669434 -73847603 + L1Md_F2 LINE L1 5891 6580 -2 2 1162 306 353 83 77 chr6 75669521 75669702 -73847335 - ORR1E LTR MaLR -167 192 4 2 1162 22 35 0 0 chr6 75670179 75670208 -73846829 + AT_rich Low_complexity Low_complexity 1 29 0 2 1162 21 0 0 0 chr6 75670739 75670760 -73846277 + AT_rich Low_complexity Low_complexity 1 21 0 2 1162 30 69 0 0 chr6 75670858 75670916 -73846121 + AT_rich Low_complexity Low_complexity 1 58 0 2 1162 814 302 24 20 chr6 75671035 75671408 -73845629 + Lx8 LINE L1 5532 5939 -1705 2 1162 292 242 69 23 chr6 75671888 75672019 -73845018 + L1M2 LINE L1 5101 5237 -906 2 1162 30 27 0 0 chr6 75672019 75672056 -73844981 + AT_rich Low_complexity Low_complexity 1 37 0 2 1162 1356 146 30 0 chr6 75672159 75672392 -73844645 - L1_Mur2 LINE L1 -822 5055 4816 2 1162 1368 236 107 25 chr6 75672384 75672776 -73844261 + Lx2B LINE L1 6558 6981 -19 2 1162 231 339 40 28 chr6 75672790 75673039 -73843998 + L1M2 LINE L1 5268 5519 -772 2 1162 22 56 0 0 chr6 75673205 75673241 -73843796 + AT_rich Low_complexity Low_complexity 1 36 0 2 1162 3899 51 75 0 chr6 75674376 75674870 -73842167 + L1Md_F2 LINE L1 6052 6582 0 2 1162 47 0 0 0 chr6 75674934 75674981 -73842056 + AT_rich Low_complexity Low_complexity 1 47 0 2 1162 25 51 0 0 chr6 75675080 75675119 -73841918 + AT_rich Low_complexity Low_complexity 1 39 0 2 1162 2195 132 55 144 chr6 75675639 75676168 -73840869 + RLTR45 LTR ERVK 1 482 0 2 1162 385 297 71 29 chr6 75676236 75676406 -73840631 - MIRb SINE MIR -6 262 86 2 1162 210 71 0 0 chr6 75676416 75676444 -73840593 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1162 387 0 0 0 chr6 75676475 75676518 -73840519 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1162 36 23 0 0 chr6 75676589 75676632 -73840405 + AT_rich Low_complexity Low_complexity 1 43 0 3 1162 204 182 0 98 chr6 75676705 75676766 -73840271 + A-rich Low_complexity Low_complexity 1 55 0 3 1162 1406 306 153 19 chr6 75676766 75677483 -73839554 - Lx7 LINE L1 -281 7415 6603 3 1162 386 206 32 31 chr6 75677491 75677615 -73839422 + L1VL1 LINE L1 219 362 -6060 3 1162 467 252 15 8 chr6 75677685 75677817 -73839220 + L1_Mus2 LINE L1 670 802 -5814 3 1162 24841 127 25 97 chr6 75677826 75682016 -73835021 + L1_Mus2 LINE L1 725 4922 -961 3 1162 3486 52 18 7 chr6 75682016 75682463 -73834574 - L1Md_F3 LINE L1 0 6584 6133 3 1162 24841 107 29 62 chr6 75682463 75684501 -73832536 + L1_Mus2 LINE L1 4923 6565 -1 3 1162 1036 337 57 10 chr6 75684543 75685035 -73832002 - Lx7 LINE L1 -1115 6581 6067 3 1162 1134 54 0 33 chr6 75685149 75685301 -73831736 + B1_Mus1 SINE Alu 2 148 0 3 1162 246 128 0 0 chr6 75685310 75685349 -73831688 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 3 1162 273 268 26 8 chr6 75685359 75685477 -73831560 - L1M3 LINE L1 -3264 2882 2763 3 1162 1471 302 131 32 chr6 75685780 75686492 -73830545 - Lx6 LINE L1 -143 7317 6536 3 1162 1025 30 7 0 chr6 75686494 75686629 -73830408 + B1_Mus2 SINE Alu 12 147 0 3 1162 492 288 0 0 chr6 75686648 75686766 -73830271 - Lx5 LINE L1 -726 6324 6207 3 1162 1357 273 56 13 chr6 75686765 75687229 -73829808 - Lx6 LINE L1 -1335 6125 5642 3 1162 7881 232 52 88 chr6 75687221 75690282 -73826755 - Lx6 LINE L1 -1382 4495 1509 3 1162 2448 174 11 25 chr6 75690282 75690753 -73826284 - Lx2 LINE L1 -1 6996 6533 3 1162 7881 232 52 88 chr6 75690753 75690897 -73826140 - Lx6 LINE L1 -4369 1508 1404 3 1162 835 219 5 15 chr6 75690905 75691109 -73825928 - Lx2 LINE L1 -68 6929 6728 3 1162 842 220 58 26 chr6 75691110 75691364 -73825673 - Lx6 LINE L1 -4475 1402 1122 3 1162 288 0 0 0 chr6 75691364 75691396 -73825641 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1162 842 252 98 24 chr6 75691396 75691670 -73825367 - Lx6 LINE L1 -6545 1183 906 3 1162 261 156 10 20 chr6 75691690 75691788 -73825249 + (TTTG)n Simple_repeat Simple_repeat 4 100 0 3 1162 2045 198 26 123 chr6 75693337 75693425 -73823612 - Lx5 LINE L1 -943 6107 6018 3 1162 450 0 0 0 chr6 75693425 75693475 -73823562 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1162 2719 175 19 49 chr6 75693475 75694278 -73822759 - Lx5 LINE L1 -1033 6017 5260 3 1162 2983 250 49 18 chr6 75694272 75694357 -73822680 + Lx5 LINE L1 6215 6299 -751 3 1162 207 0 0 0 chr6 75694357 75694380 -73822657 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1162 2983 250 49 18 chr6 75694380 75695055 -73821982 + Lx5 LINE L1 6300 6998 -52 3 1162 857 289 46 27 chr6 75695282 75695649 -73821388 + ORR1D1 LTR MaLR 1 374 0 3 1162 2202 95 73 0 chr6 75695710 75696027 -73821010 + MTB LTR MaLR 1 340 -60 3 1162 895 105 0 0 chr6 75696026 75696150 -73820887 + MTB LTR MaLR 217 340 -60 3 1162 1318 88 5 5 chr6 75696149 75696333 -73820704 + MTB LTR MaLR 217 400 0 3 1162 27 62 0 0 chr6 75696742 75696790 -73820247 + AT_rich Low_complexity Low_complexity 1 48 0 3 1162 219 114 0 0 chr6 75696860 75696895 -73820142 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1162 558 67 0 0 chr6 75697113 75697188 -73819849 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 1162 463 324 44 0 chr6 75697975 75698111 -73818926 - B4 SINE B4 -44 248 107 3 1162 633 27 0 0 chr6 75698128 75698203 -73818834 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 3 1162 3346 251 94 76 chr6 75698728 75700019 -73817018 - Lx7 LINE L1 -160 7536 6223 3 1162 432 82 0 0 chr6 75700053 75700114 -73816923 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1162 195 42 0 0 chr6 75700120 75700144 -73816893 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1162 2309 254 45 34 chr6 75700248 75700939 -73816098 - RMER1B Other Other -110 956 183 3 1162 366 107 0 0 chr6 75700939 75700995 -73816042 + (CAGGG)n Simple_repeat Simple_repeat 4 59 0 3 1162 2244 254 105 21 chr6 75700995 75701144 -73815893 - RMER1A Other Other -848 182 71 3 1162 590 126 39 0 chr6 75701159 75701286 -73815751 - Lx3_Mus LINE L1 0 7009 6878 3 1162 298 242 0 0 chr6 75701286 75701352 -73815685 - L1_Mur3 LINE L1 -435 5445 5380 3 1162 1074 300 19 9 chr6 75701356 75701676 -73815361 + RMER12 LTR ERVK 1 323 -999 3 1162 450 0 0 0 chr6 75701705 75701755 -73815282 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1162 367 310 68 19 chr6 75701785 75701969 -73815068 + RLTR22_Mus LTR ERVK 1398 1636 -212 3 1162 323 297 101 37 chr6 75702007 75702224 -73814813 + RLTR21 LTR ERVK 1342 1572 0 3 1162 356 238 32 8 chr6 75702224 75702347 -73814690 - L1_Mur3 LINE L1 -499 5381 5256 3 1162 905 245 75 16 chr6 75702322 75702575 -73814462 - Lx5 LINE L1 0 7050 6783 3 1162 3221 234 69 29 chr6 75702585 75703446 -73813591 - Lx5 LINE L1 -320 6680 5783 3 1162 2245 72 3 0 chr6 75703446 75703737 -73813300 - L1_Mus1 LINE L1 0 6567 6276 3 1162 2195 226 11 33 chr6 75703737 75704286 -73812751 - Lx5 LINE L1 -1205 5795 5348 3 1162 3181 190 6 3 chr6 75704284 75704938 -73812099 + Lx5 LINE L1 4632 5287 -590 3 1162 1991 110 19 3 chr6 75704950 75705259 -73811778 + L1_Mus3 LINE L1 6319 6632 -6 3 1162 372 280 61 0 chr6 75705288 75705420 -73811617 - Lx5 LINE L1 -958 6092 5953 3 1162 647 247 37 41 chr6 75705579 75705874 -73811163 - L1_Mur3 LINE L1 -2704 3176 2883 3 1162 275 122 0 20 chr6 75706661 75706711 -73810326 + (TCC)n Simple_repeat Simple_repeat 3 51 0 3 1162 879 145 0 27 chr6 75706726 75706910 -73810127 + CT-rich Low_complexity Low_complexity 1 179 0 3 1162 276 351 108 4 chr6 75707256 75707496 -73809541 + MER90a LTR ERV1 98 362 -252 3 1162 518 320 73 11 chr6 75707502 75707679 -73809358 + B3A SINE B2 3 190 -8 3 1162 7477 67 11 4 chr6 75708112 75709126 -73807911 - L1Md_F2 LINE L1 -14 6568 5548 3 1162 242 389 97 0 chr6 75709128 75709241 -73807796 + LTR16B1 LTR ERVL 119 242 -238 3 1162 180 152 0 0 chr6 75710192 75710225 -73806812 + CT-rich Low_complexity Low_complexity 5 37 0 3 1162 664 265 17 52 chr6 75710794 75711025 -73806012 + RLTR15 LTR ERVK 1 223 -136 3 1162 1675 201 19 14 chr6 75711066 75711474 -73805563 + MYSERV6-int LTR ERVK 8555 8904 -55 3 1162 729 281 46 52 chr6 75711489 75711816 -73805221 + RLTR15 LTR ERVK 1 325 -34 3 1162 414 57 0 0 chr6 75711816 75711869 -73805168 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1162 5325 206 57 16 chr6 75712647 75714084 -73802953 + Lx4B LINE L1 5485 6947 -29 3 1162 335 320 97 36 chr6 75714175 75714570 -73802467 - L1MC LINE L1 -2943 3203 2786 3 1162 446 196 9 0 chr6 75714574 75714681 -73802356 + (CA)n Simple_repeat Simple_repeat 2 109 0 3 1162 1045 248 19 10 chr6 75714699 75715008 -73802029 + L1_Mur3 LINE L1 2066 2377 -3503 3 1162 24 0 0 0 chr6 75715109 75715133 -73801904 + AT_rich Low_complexity Low_complexity 1 24 0 3 1162 26 50 0 0 chr6 75715380 75715420 -73801617 + AT_rich Low_complexity Low_complexity 1 40 0 3 1162 357 293 92 25 chr6 75716072 75716191 -73800846 + Lx8 LINE L1 6523 6649 -824 3 1162 333 304 0 0 chr6 75716665 75716757 -73800280 + L1MCa LINE L1 1718 1809 -4699 3 1162 11204 151 78 29 chr6 75716833 75717781 -73799256 + L1VL1 LINE L1 214 1271 -2427 3 1162 3017 14 0 82 chr6 75717781 75718181 -73798856 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1162 11204 127 58 8 chr6 75718181 75719914 -73797123 + L1VL1 LINE L1 1272 3023 -675 3 1162 9317 141 43 16 chr6 75719895 75721560 -73795477 + L1_Mm LINE L1 3782 5490 -393 3 1162 2003 135 36 6 chr6 75721560 75721896 -73795141 + L1_Mus3 LINE L1 6284 6629 -9 3 1162 225 83 0 0 chr6 75721975 75722011 -73795026 + (TTA)n Simple_repeat Simple_repeat 1 36 0 3 1162 1460 108 0 14 chr6 75722011 75722226 -73794811 - L1Md_F2 LINE L1 -23 6559 6348 3 1162 712 79 17 26 chr6 75723176 75723293 -73793744 + (CACAC)n Simple_repeat Simple_repeat 5 120 0 3 1162 4905 117 3 24 chr6 75724028 75725061 -73791976 + L1VL4 LINE L1 219 1224 -2335 3 1162 294 333 134 17 chr6 75725247 75725366 -73791671 + B3A SINE B2 2 134 -64 3 1162 369 0 0 0 chr6 75725368 75725409 -73791628 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1162 255 235 14 14 chr6 75725458 75725527 -73791510 + ID4_ SINE ID 2 70 -13 3 1162 540 356 17 6 chr6 75725773 75725951 -73791086 + B3 SINE B2 7 186 -30 3 1162 483 33 0 0 chr6 75725956 75726017 -73791020 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1162 687 357 34 46 chr6 75727337 75727815 -73789222 - Lx8 LINE L1 -213 7260 6789 3 1162 1848 232 18 10 chr6 75728007 75728399 -73788638 - RMER15 LTR ERVL -46 529 135 3 1162 613 284 27 16 chr6 75728399 75728585 -73788452 - Lx5 LINE L1 -7 7043 6856 3 1162 3195 194 53 5 chr6 75728593 75729249 -73787788 - Lx5 LINE L1 -623 6427 5740 3 1162 698 258 6 0 chr6 75729249 75729408 -73787629 - RMER15 LTR ERVL -413 162 3 3 1162 715 360 22 37 chr6 75729419 75729687 -73787350 + B4 SINE B4 29 292 0 3 1162 476 43 0 14 chr6 75729687 75729731 -73787306 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1162 600 14 0 0 chr6 75729731 75729800 -73787237 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1162 476 43 0 14 chr6 75729800 75729825 -73787212 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 1162 578 295 35 24 chr6 75731254 75731424 -73785613 - B3A SINE B2 -15 183 12 3 1162 400 351 7 39 chr6 75731767 75731921 -73785116 - RSINE1 SINE B4 0 165 17 3 1162 306 0 0 0 chr6 75731932 75731966 -73785071 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 3 1162 205 29 29 29 chr6 75733124 75733159 -73783878 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1162 473 271 142 36 chr6 75733381 75733902 -73783135 - L1M4 LINE L1 -2671 3475 2900 3 1162 751 274 57 143 chr6 75733965 75734349 -73782688 - MTEb LTR MaLR -13 366 16 3 1162 1490 275 42 69 chr6 75734647 75735167 -73781870 + RMER19C LTR ERVK 103 608 -3 3 1162 4582 78 26 8 chr6 75735173 75735819 -73781218 + L1_Mus2 LINE L1 5909 6566 0 3 1162 333 306 179 0 chr6 75735853 75735987 -73781050 + Lx5 LINE L1 6625 6782 -268 3 1162 330 138 0 0 chr6 75736061 75736119 -73780918 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1162 23 0 0 0 chr6 75736345 75736368 -73780669 + AT_rich Low_complexity Low_complexity 1 23 0 3 1162 336 362 21 28 chr6 75736523 75736665 -73780372 - RSINE1 SINE B4 -10 155 15 3 1162 1166 76 0 23 chr6 75737465 75737641 -73779396 + L1Md_F2 LINE L1 6411 6582 0 3 1162 450 380 49 35 chr6 75739404 75739690 -73777347 - B4A SINE B4 0 292 3 3 1162 4698 104 66 28 chr6 75739715 75739754 -73777283 - L1_Mus3 LINE L1 0 6638 6611 3 1162 2364 47 0 7 chr6 75739754 75740056 -73776981 - L1Md_F3 LINE L1 -2 6582 6283 3 1162 4698 104 66 28 chr6 75740056 75740770 -73776267 - L1_Mus3 LINE L1 -28 6610 5856 3 1162 227 327 63 18 chr6 75742686 75742907 -73774130 + L1MA5 LINE L1 6064 6294 -6 4 1162 1115 90 6 0 chr6 75742980 75743136 -73773901 - L1_Mus4 LINE L1 -695 5941 5785 4 1162 2243 99 9 9 chr6 75743137 75743462 -73773575 + L1_Mus4 LINE L1 6232 6556 -80 4 1162 1027 102 0 6 chr6 75743461 75743619 -73773418 + L1_Mus4 LINE L1 5785 5941 -695 4 1162 22 0 0 0 chr6 75743657 75743679 -73773358 + AT_rich Low_complexity Low_complexity 1 22 0 4 1162 506 88 0 0 chr6 75743680 75743760 -73773277 + L1_Mus3 LINE L1 6558 6637 -1 4 1162 221 193 0 17 chr6 75744461 75744519 -73772518 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 4 1162 26 30 0 0 chr6 75744666 75744699 -73772338 + AT_rich Low_complexity Low_complexity 1 33 0 4 1162 205 288 0 0 chr6 75744867 75744926 -73772111 + MIRc SINE MIR 202 260 -8 4 1162 279 0 0 0 chr6 75745665 75745696 -73771341 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1162 21 0 0 0 chr6 75747081 75747102 -73769935 + AT_rich Low_complexity Low_complexity 1 21 0 4 1162 1532 264 16 16 chr6 75748532 75748902 -73768135 + ORR1D1 LTR MaLR 3 372 -2 4 1162 703 245 49 0 chr6 75749420 75749563 -73767474 - B3A SINE B2 -48 150 1 4 1162 320 401 21 0 chr6 75751957 75752099 -73764938 - B3A SINE B2 -1 197 53 4 1162 26 50 0 0 chr6 75752247 75752287 -73764750 + AT_rich Low_complexity Low_complexity 1 40 0 4 1162 1159 207 156 68 chr6 75752459 75752843 -73764194 - MTD LTR MaLR 0 419 2 4 1162 455 165 180 8 chr6 75753171 75753293 -73763744 - URR1B DNA MER1_type 0 225 83 4 1162 456 19 0 0 chr6 75754433 75754486 -73762551 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1162 1173 62 0 0 chr6 75754487 75754633 -73762404 - B1_Mm SINE Alu -1 146 1 4 1162 1867 173 35 5 chr6 75756115 75756487 -73760550 - Lx2B LINE L1 -1 6999 6617 4 1162 1381 258 70 9 chr6 75756487 75757070 -73759967 - L1_Mur3 LINE L1 -2446 3434 2816 4 1162 844 203 75 0 chr6 75757075 75757262 -73759775 + L1_Mur3 LINE L1 4343 4543 -1337 4 1162 1851 215 87 4 chr6 75757473 75758000 -73759037 + L1_Mur3 LINE L1 3740 4310 -1570 4 1162 6650 130 29 2 chr6 75757992 75759200 -73757837 + L1_Mus4 LINE L1 5390 6635 -1 4 1162 869 187 52 5 chr6 75759199 75759393 -73757644 + L1_Mur3 LINE L1 4324 4526 -1354 4 145 2182 286 65 101 chr6 75759400 75759837 -73757200 + Lx7 LINE L1 6271 6709 -987 4 1163 1042 103 0 14 chr6 75759837 75759985 -73757052 + B1_Mus1 SINE Alu 3 148 0 4 1163 2182 286 65 101 chr6 75759985 75760761 -73756276 + Lx7 LINE L1 6710 7440 -256 4 1163 4250 114 1 43 chr6 75760923 75761620 -73755417 + L1_Mus4 LINE L1 5962 6629 -7 4 1163 298 268 0 53 chr6 75761715 75761790 -73755247 - RMER20B LTR ERVK -2 625 555 4 1163 1707 239 16 70 chr6 75761831 75762277 -73754760 - RMER20B LTR ERVK -201 426 5 4 1163 255 224 0 0 chr6 75763623 75763699 -73753338 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 1163 348 64 0 0 chr6 75764640 75764687 -73752350 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1163 201 146 0 0 chr6 75764687 75764735 -73752302 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1163 523 353 11 62 chr6 75766017 75766292 -73750745 - B4A SINE B4 -6 286 26 4 1163 477 369 11 11 chr6 75766703 75766892 -73750145 - B3A SINE B2 -8 190 2 4 1163 429 235 50 10 chr6 75767108 75767207 -73749830 + RSINE1 SINE B4 56 158 -7 4 1163 215 61 30 0 chr6 75767227 75767260 -73749777 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1163 348 283 39 65 chr6 75767927 75768082 -73748955 + RMER15 LTR ERVL 359 509 -66 4 1163 348 342 58 75 chr6 75768072 75768350 -73748687 - B4 SINE B4 -13 279 7 4 1163 399 352 30 30 chr6 75768389 75768556 -73748481 - B3A SINE B2 -7 191 25 4 1163 282 116 0 0 chr6 75768558 75768601 -73748436 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1163 357 325 60 6 chr6 75769699 75769866 -73747171 - B3A SINE B2 -18 180 5 4 1163 1631 282 19 45 chr6 75770124 75770659 -73746378 - RMER19C LTR ERVK 0 611 91 4 1163 295 238 51 169 chr6 75770663 75770840 -73746197 + RMER15 LTR ERVL 12 167 -408 4 1163 292 276 59 39 chr6 75770829 75770905 -73746132 + RMER15 LTR ERVL 277 354 -221 4 1163 581 105 0 11 chr6 75770905 75770992 -73746045 - RMER2 LTR ERV1 0 567 482 4 1163 1711 123 36 4 chr6 75770989 75771266 -73745771 - RMER2 LTR ERV1 -281 286 1 4 1163 691 252 98 5 chr6 75771269 75771472 -73745565 + RMER15 LTR ERVL 352 573 -2 4 1163 438 20 0 0 chr6 75771931 75771982 -73745055 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 1163 26 30 0 0 chr6 75773024 75773057 -73743980 + AT_rich Low_complexity Low_complexity 1 33 0 4 1163 1079 97 7 0 chr6 75773535 75773680 -73743357 + B1_Mus2 SINE Alu 2 147 0 4 1163 372 59 0 0 chr6 75773683 75773734 -73743303 + (A)n Simple_repeat Simple_repeat 1 51 0 4 1163 915 255 27 47 chr6 75773734 75774072 -73742965 + Lx9 LINE L1 7143 7473 -171 4 1163 263 167 65 32 chr6 75774544 75774637 -73742400 + (TTTG)n Simple_repeat Simple_repeat 2 97 0 4 1163 388 330 22 44 chr6 75774814 75774995 -73742042 + B3A SINE B2 22 198 0 4 1163 241 300 45 96 chr6 75775296 75775495 -73741542 + MER53 DNA hAT 4 192 -1 4 1163 364 280 52 35 chr6 75775325 75775499 -73741538 - MER53 DNA hAT -10 183 7 4 1163 21 0 0 0 chr6 75777070 75777091 -73739946 + AT_rich Low_complexity Low_complexity 1 21 0 4 1163 28 48 0 0 chr6 75777295 75777337 -73739700 + AT_rich Low_complexity Low_complexity 1 42 0 4 1163 187 31 62 0 chr6 75778061 75778093 -73738944 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1163 434 234 52 15 chr6 75778635 75778743 -73738294 + B3A SINE B2 87 200 -16 4 1163 1602 289 31 18 chr6 75778904 75779419 -73737618 + Lx9 LINE L1 6483 7004 -640 4 1163 316 316 134 7 chr6 75779411 75779695 -73737342 - L1MC4a LINE L1 -288 7754 7427 4 1163 677 216 28 92 chr6 75779820 75780029 -73737008 - B2_Mm2 SINE B2 -9 207 1 4 1163 207 0 0 0 chr6 75780256 75780279 -73736758 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1163 390 21 0 0 chr6 75780279 75780326 -73736711 + (TGG)n Simple_repeat Simple_repeat 3 49 0 4 1163 357 320 175 49 chr6 75780374 75780722 -73736315 - L1MC4a LINE L1 -973 6909 6518 4 1163 21 36 0 0 chr6 75781020 75781048 -73735989 + AT_rich Low_complexity Low_complexity 1 28 0 4 1163 22050 185 26 33 chr6 75782057 75787821 -73729216 + L1VL2 LINE L1 371 5876 -7 4 1163 1751 89 16 0 chr6 75787875 75788123 -73728914 - Lx LINE L1 -734 5920 5669 4 1163 4420 147 8 21 chr6 75788123 75788875 -73728162 + Lx LINE L1 5913 6654 0 4 1163 1524 166 18 4 chr6 75788875 75788903 -73728134 - Lx2B LINE L1 -1332 5668 5640 4 1163 337 200 59 0 chr6 75788882 75788967 -73728070 + Lx9 LINE L1 7372 7461 -183 4 1163 2574 243 30 6 chr6 75788980 75789572 -73727465 - Lx5 LINE L1 -550 6500 5895 4 1163 2022 106 16 7 chr6 75789572 75789877 -73727160 - Lx LINE L1 -2 6652 6345 4 1163 2574 199 209 16 chr6 75789877 75790487 -73726550 - Lx5 LINE L1 -1156 5894 5037 4 1163 465 344 12 24 chr6 75790487 75790654 -73726383 - MTE2a LTR MaLR -190 189 25 4 1163 338 57 19 0 chr6 75790856 75790909 -73726128 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1163 434 348 62 25 chr6 75791400 75791562 -73725475 - MER82 DNA MER2_type 0 653 486 4 1163 3235 263 99 14 chr6 75791625 75792029 -73725008 - Lx6 LINE L1 -199 7261 6740 4 1163 985 80 26 0 chr6 75792029 75792180 -73724857 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 4 1163 3235 264 120 12 chr6 75792180 75792789 -73724248 - Lx6 LINE L1 -721 6739 6082 4 1163 475 304 112 64 chr6 75793174 75793441 -73723596 + MTD LTR MaLR 138 417 -2 4 1163 310 295 36 45 chr6 75793442 75793552 -73723485 - Tigger5 DNA MER2_type -19 2387 2279 4 1163 885 116 0 0 chr6 75793605 75793751 -73723286 + (CA)n Simple_repeat Simple_repeat 1 146 0 4 1163 2555 101 8 30 chr6 75793868 75794106 -73722931 - MTB_Mm LTR MaLR -1 406 173 4 1163 4404 148 77 35 chr6 75794106 75794268 -73722769 - RMER17A2 LTR ERVK 0 906 746 4 1163 249 33 0 0 chr6 75794268 75794298 -73722739 + (G)n Simple_repeat Simple_repeat 1 30 0 4 1163 4404 148 77 35 chr6 75794298 75794594 -73722443 - RMER17A2 LTR ERVK -161 745 465 4 1163 692 80 10 0 chr6 75794594 75794694 -73722343 + (GA)n Simple_repeat Simple_repeat 2 102 0 4 1163 4404 148 77 35 chr6 75794694 75795103 -73721934 - RMER17A2 LTR ERVK -442 464 4 4 1163 2555 101 8 30 chr6 75795103 75795261 -73721776 - MTB_Mm LTR MaLR -235 172 19 4 1163 254 269 115 0 chr6 75795780 75795858 -73721179 - B4A SINE B4 -20 272 186 4 1163 561 15 0 0 chr6 75795943 75796009 -73721028 + (TC)n Simple_repeat Simple_repeat 2 67 0 4 1163 183 255 0 60 chr6 75796481 75796531 -73720506 + L3 LINE CR1 4081 4127 -362 4 1163 420 333 43 11 chr6 75796593 75796778 -73720259 + Lx8 LINE L1 7039 7229 -244 4 1163 336 239 29 41 chr6 75796986 75797156 -73719881 + Lx9 LINE L1 7477 7644 0 4 1163 747 325 49 9 chr6 75798082 75798426 -73718611 + Lx9 LINE L1 6459 6816 -828 4 1163 1340 209 34 35 chr6 75798598 75799237 -73717800 + L1_Mur2 LINE L1 898 1482 -4395 4 1163 2216 212 77 53 chr6 75799263 75799939 -73717098 + L1_Mur2 LINE L1 2338 3029 -2848 4 1163 423 0 0 0 chr6 75799939 75799986 -73717051 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1163 1499 318 48 20 chr6 75799987 75800335 -73716702 + Lx5 LINE L1 6455 6886 -574 4 1163 180 0 0 0 chr6 75800335 75800355 -73716682 + (TCTCTG)n Simple_repeat Simple_repeat 2 21 0 4 1163 1499 324 58 14 chr6 75800355 75800575 -73716462 + Lx5 LINE L1 6796 7032 -18 4 1163 996 298 45 8 chr6 75800662 75801014 -73716023 + Lx9 LINE L1 7067 7431 -213 4 1163 414 94 0 0 chr6 75801017 75801081 -73715956 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1163 496 359 75 24 chr6 75801266 75801520 -73715517 + B4A SINE B4 3 269 -23 4 1163 513 0 0 0 chr6 75801568 75801625 -73715412 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 1163 315 228 0 0 chr6 75802109 75802201 -73714836 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 1163 426 317 30 79 chr6 75802203 75802508 -73714529 - B4 SINE B4 0 292 3 4 1163 227 328 63 32 chr6 75803441 75803567 -73713470 - RMER12 LTR ERVK -464 858 729 4 1163 233 308 77 0 chr6 75804634 75804712 -73712325 - MLT2B2 LTR ERVL -118 444 361 4 1163 553 264 39 35 chr6 75804712 75804998 -73712039 + Lx9 LINE L1 7171 7457 -187 4 1163 462 18 0 0 chr6 75804998 75805053 -73711984 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1163 1270 287 14 40 chr6 75805227 75805648 -73711389 - Lx6 LINE L1 -26 7434 7025 4 1163 185 234 0 41 chr6 75805944 75805993 -73711044 + MIRm SINE MIR 120 166 -110 5 1163 22 0 0 0 chr6 75806071 75806093 -73710944 + AT_rich Low_complexity Low_complexity 1 22 0 5 1163 434 252 20 0 chr6 75806991 75807090 -73709947 - B3 SINE B2 -35 181 81 5 1163 256 337 0 0 chr6 75807575 75807661 -73709376 + CT-rich Low_complexity Low_complexity 3 88 0 5 1163 420 275 50 0 chr6 75807913 75808033 -73709004 - B1_Mur1 SINE Alu -2 147 22 5 1163 309 245 53 20 chr6 75808269 75808396 -73708641 + RLTR20A2 LTR ERVK 192 432 -109 5 1163 1515 59 0 0 chr6 75808407 75808593 -73708444 - L1_Mus1 LINE L1 -351 6216 6031 5 1163 2573 66 3 0 chr6 75808593 75808928 -73708109 + L1_Mus1 LINE L1 6225 6560 -7 5 1163 337 284 36 29 chr6 75808941 75809052 -73707985 + RLTR20A2 LTR ERVK 451 562 -16 5 1163 36114 68 6 5 chr6 75810445 75816625 -73700412 - L1Md_F2 LINE L1 0 6582 440 5 1163 6120 80 2 8 chr6 75816637 75817591 -73699446 - L1Md_F LINE L1 -4479 1404 451 5 1163 31 82 0 0 chr6 75817594 75817667 -73699370 + AT_rich Low_complexity Low_complexity 1 73 0 5 1163 25 83 0 0 chr6 75817911 75817971 -73699066 + AT_rich Low_complexity Low_complexity 1 60 0 5 1163 447 19 0 0 chr6 75818475 75818527 -73698510 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1163 21 36 0 0 chr6 75818780 75818808 -73698229 + AT_rich Low_complexity Low_complexity 1 28 0 5 1163 476 302 37 48 chr6 75819116 75819411 -73697626 - Lx9 LINE L1 -22 7622 7331 5 1163 229 250 0 0 chr6 75819894 75819946 -73697091 + (TGG)n Simple_repeat Simple_repeat 1 52 0 5 1163 627 26 0 0 chr6 75820201 75820278 -73696759 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 5 1163 598 159 60 26 chr6 75820278 75820394 -73696643 - B1_Mur3 SINE Alu -3 146 27 5 1163 288 188 0 0 chr6 75820441 75820505 -73696532 + GA-rich Low_complexity Low_complexity 4 67 0 5 1163 223 191 79 0 chr6 75820909 75820972 -73696065 + A-rich Low_complexity Low_complexity 3 70 0 5 1163 261 320 37 71 chr6 75821304 75821573 -73695464 + L1M5 LINE L1 2121 2380 -3763 5 1163 452 32 16 0 chr6 75821761 75821823 -73695214 + (CAAAAA)n Simple_repeat Simple_repeat 4 66 0 5 1163 384 282 89 29 chr6 75821842 75822421 -73694616 + L1M5 LINE L1 2574 3151 -2992 5 1163 333 0 0 0 chr6 75822761 75822798 -73694239 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1163 25 0 0 0 chr6 75823514 75823539 -73693498 + AT_rich Low_complexity Low_complexity 1 25 0 5 1163 6222 125 20 5 chr6 75823755 75824726 -73692311 + Lx LINE L1 5692 6648 -6 5 1163 3744 55 2 2 chr6 75825338 75825810 -73691227 + L1Md_F2 LINE L1 5115 5586 -297 5 1163 7864 50 2 2 chr6 75825811 75826794 -73690243 + L1Md_F2 LINE L1 5588 6570 -12 5 1163 23 0 0 0 chr6 75826855 75826878 -73690159 + AT_rich Low_complexity Low_complexity 1 23 0 5 1163 786 209 14 0 chr6 75827392 75827540 -73689497 + RMER1B Other Other 52 201 -865 5 1163 2002 224 54 4 chr6 75827536 75827997 -73689040 + RMER1B Other Other 577 1060 -6 5 1163 23 54 0 0 chr6 75828000 75828037 -73689000 + AT_rich Low_complexity Low_complexity 1 37 0 5 1163 340 304 92 14 chr6 75828103 75828473 -73688564 + L1M2 LINE L1 4420 4818 -1325 5 1163 578 311 77 53 chr6 75828499 75828914 -73688123 + L1M2 LINE L1 4869 5293 -850 5 1163 221 136 45 0 chr6 75828946 75828990 -73688047 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1163 314 302 28 41 chr6 75828990 75829135 -73687902 + L1M2 LINE L1 5359 5501 -2284 5 1163 279 345 48 56 chr6 75829124 75829394 -73687643 + L1M1 LINE L1 5549 5816 -484 5 1163 5141 88 27 3 chr6 75829686 75830791 -73686246 - L1Md_F2 LINE L1 -2 6652 5414 5 1163 10196 75 2 1 chr6 75830782 75832165 -73684872 + L1_Mm LINE L1 2830 4214 -1669 5 1163 378 0 0 0 chr6 75833594 75833636 -73683401 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1163 302 292 123 0 chr6 75833637 75833743 -73683294 + MTD LTR MaLR 299 417 -2 5 1163 704 213 0 14 chr6 75835435 75835573 -73681464 - B1_Mus2 SINE Alu 0 147 12 5 1163 488 282 0 22 chr6 75835696 75835849 -73681188 - L1_Mur3 LINE L1 -535 5654 5490 5 1163 1550 32 21 0 chr6 75835855 75836042 -73680995 + B2_Mm1a SINE B2 1 191 -2 5 1163 500 325 48 19 chr6 75836674 75836881 -73680156 - B3 SINE B2 -3 213 1 5 1163 438 301 53 77 chr6 75837111 75837280 -73679757 + B3A SINE B2 8 172 -26 5 1163 216 0 0 0 chr6 75837972 75837996 -73679041 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1163 1209 323 10 31 chr6 75838091 75838475 -73678562 - MTE2b LTR MaLR -3 376 1 5 1163 293 295 128 49 chr6 75838476 75838679 -73678358 + MER31A LTR ERV1 10 228 -257 5 1163 415 376 45 6 chr6 75839466 75839645 -73677392 - B3 SINE B2 -30 186 1 5 1163 23 68 0 0 chr6 75840320 75840364 -73676673 + AT_rich Low_complexity Low_complexity 1 44 0 5 1163 182 118 29 0 chr6 75840415 75840449 -73676588 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1163 1234 228 224 40 chr6 75840452 75841119 -73675918 + Lx9 LINE L1 6853 7642 -2 5 1163 259 191 266 27 chr6 75841160 75841254 -73675783 - B3A SINE B2 -54 162 48 5 1163 899 330 41 53 chr6 75841384 75841909 -73675128 - Lx6 LINE L1 -41 7419 6507 5 1163 2030 264 67 14 chr6 75841903 75842630 -73674407 - Lx6 LINE L1 -661 6389 5597 5 1163 2811 234 52 7 chr6 75842627 75843357 -73673680 + Lx6 LINE L1 4861 5623 -257 5 1163 565 351 40 58 chr6 75843575 75843923 -73673114 + MTEa LTR MaLR 1 342 -37 5 1163 547 305 0 8 chr6 75844724 75844843 -73672194 + RSINE1 SINE B4 5 122 -43 5 1163 264 130 0 0 chr6 75844888 75844934 -73672103 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1163 396 246 112 24 chr6 75845262 75845387 -73671650 + B3A SINE B2 36 171 -27 5 1163 220 250 0 0 chr6 75845410 75845474 -73671563 + (CAGA)n Simple_repeat Simple_repeat 1 64 0 5 1163 4182 58 0 6 chr6 75845594 75846128 -73670909 - L1Md_F2 LINE L1 0 6582 6052 5 1163 519 309 44 10 chr6 75846309 75846515 -73670522 - B3 SINE B2 -2 214 2 5 1163 22 0 0 0 chr6 75847643 75847665 -73669372 + AT_rich Low_complexity Low_complexity 1 22 0 5 1163 586 330 20 53 chr6 75848112 75848358 -73668679 + MT2A LTR ERVL 1 238 -295 5 1163 219 203 0 0 chr6 75848358 75848417 -73668620 + CT-rich Low_complexity Low_complexity 3 61 0 5 1163 1676 205 39 31 chr6 75848970 75849357 -73667680 + Lx2B LINE L1 6611 7000 0 5 1163 1820 262 86 31 chr6 75849437 75849506 -73667531 + Lx9 LINE L1 6887 6954 -690 5 1163 891 50 0 0 chr6 75849506 75849627 -73667410 + (CA)n Simple_repeat Simple_repeat 2 122 0 5 1163 1820 262 86 31 chr6 75849627 75850162 -73666875 + Lx9 LINE L1 6955 7529 -115 5 1163 2295 57 17 0 chr6 75850162 75850460 -73666577 + L1Md_F2 LINE L1 6280 6582 0 5 1163 1820 262 86 31 chr6 75850460 75850567 -73666470 + Lx9 LINE L1 7530 7637 -7 5 1163 207 0 0 0 chr6 75852583 75852606 -73664431 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1163 234 150 0 0 chr6 75852606 75852646 -73664391 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 5 1163 857 272 84 133 chr6 75853596 75853978 -73663059 + ORR1D2 LTR MaLR 6 368 -2 5 1163 288 350 70 47 chr6 75855067 75855196 -73661841 + B1F1 SINE Alu 2 133 -16 5 1163 459 308 6 25 chr6 75855566 75855729 -73661308 + RSINE1 SINE B4 2 161 -4 5 1163 186 400 0 74 chr6 75856081 75856216 -73660821 - MIR3 SINE MIR -19 189 65 5 1163 1077 89 0 7 chr6 75856334 75856481 -73660556 - B1_Mm SINE Alu 0 147 2 5 1163 302 91 0 70 chr6 75856484 75856555 -73660482 + L1Md_F3 LINE L1 6519 6584 0 5 1163 24 77 0 0 chr6 75856735 75856787 -73660250 + AT_rich Low_complexity Low_complexity 1 52 0 5 1163 24 0 0 0 chr6 75857165 75857189 -73659848 + AT_rich Low_complexity Low_complexity 1 24 0 5 1163 44 35 0 0 chr6 75857336 75857394 -73659643 + AT_rich Low_complexity Low_complexity 1 58 0 5 1163 395 137 12 3 chr6 75857459 75857533 -73659504 - B1_Mm SINE Alu -3 144 38 5 1163 594 0 0 0 chr6 75858242 75858308 -73658729 + (TA)n Simple_repeat Simple_repeat 1 66 0 5 1163 550 326 66 11 chr6 75858822 75859005 -73658032 + B3A SINE B2 6 198 0 5 1163 25 0 0 0 chr6 75859142 75859167 -73657870 + AT_rich Low_complexity Low_complexity 1 25 0 5 1163 346 355 70 0 chr6 75859900 75860072 -73656965 + B3A SINE B2 11 194 -4 5 1163 22 0 0 0 chr6 75860156 75860178 -73656859 + AT_rich Low_complexity Low_complexity 1 22 0 5 1163 24 53 0 0 chr6 75860621 75860659 -73656378 + AT_rich Low_complexity Low_complexity 1 38 0 5 1163 184 265 14 68 chr6 75860765 75860838 -73656199 - L2c LINE L2 -297 3090 3022 5 1163 1065 81 0 0 chr6 75861312 75861461 -73655576 + (GA)n Simple_repeat Simple_repeat 1 149 0 5 1163 35 0 0 0 chr6 75861688 75861723 -73655314 + AT_rich Low_complexity Low_complexity 1 35 0 5 1163 434 144 0 49 chr6 75862524 75862626 -73654411 - Lx3A LINE L1 -7 6974 6878 5 1163 4806 111 77 8 chr6 75862659 75863595 -73653442 - Lx3A LINE L1 -583 6398 5425 5 1163 414 364 47 26 chr6 75863707 75863899 -73653138 - MTD LTR MaLR -219 200 5 5 1163 4263 133 64 11 chr6 75864476 75865206 -73651831 + Lx3A LINE L1 6210 6978 -3 5 1163 31 44 0 0 chr6 75865209 75865254 -73651783 + AT_rich Low_complexity Low_complexity 1 45 0 5 1163 524 256 84 37 chr6 75866851 75867055 -73649982 - MTC LTR MaLR -200 196 1 5 1163 345 244 57 23 chr6 75867862 75867950 -73649087 + RSINE1 SINE B4 44 134 -31 5 1163 2285 215 34 103 chr6 75867951 75868603 -73648434 - RMER19C LTR ERVK 0 611 5 5 1163 541 215 14 0 chr6 75868607 75868751 -73648286 + (TA)n Simple_repeat Simple_repeat 2 147 0 5 1163 298 231 51 13 chr6 75868767 75868925 -73648112 + (TA)n Simple_repeat Simple_repeat 1 164 0 5 1163 5499 121 62 25 chr6 75869311 75870277 -73646760 - Lx3A LINE L1 -3 6978 5977 5 1163 364 267 12 42 chr6 75870311 75870533 -73646504 + (TATG)n Simple_repeat Simple_repeat 1 215 0 5 1163 230 148 19 0 chr6 75870708 75870762 -73646275 + CT-rich Low_complexity Low_complexity 2 56 0 5 1163 210 225 0 0 chr6 75870889 75870969 -73646068 + CT-rich Low_complexity Low_complexity 1 80 0 5 1163 293 285 68 15 chr6 75870981 75871184 -73645853 + (TCTCTG)n Simple_repeat Simple_repeat 1 213 0 5 1163 603 0 0 0 chr6 75871192 75871259 -73645778 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1163 193 98 49 0 chr6 75871265 75871306 -73645731 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 5 1163 265 286 9 18 chr6 75871309 75871423 -73645614 + CT-rich Low_complexity Low_complexity 2 114 0 5 1163 233 366 11 37 chr6 75873004 75873181 -73643856 - MIRc SINE MIR -34 234 62 6 1163 206 32 32 0 chr6 75873559 75873590 -73643447 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 6 1163 3250 228 57 1 chr6 75874045 75874770 -73642267 + Lx5 LINE L1 6284 7048 -2 6 1163 2939 88 2 5 chr6 75874825 75875266 -73641771 - L1_Mus4 LINE L1 -649 5987 5542 6 1163 4941 57 14 0 chr6 75875280 75875907 -73641130 - L1Md_F3 LINE L1 -14 6570 5935 6 1163 3730 134 33 8 chr6 75875919 75876553 -73640484 + L1_Mus4 LINE L1 5982 6631 -5 6 1163 243 0 0 0 chr6 75876567 75876594 -73640443 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 6 1163 813 49 0 0 chr6 75876595 75876697 -73640340 + (GGAAA)n Simple_repeat Simple_repeat 4 105 0 6 1163 2114 221 37 84 chr6 75876698 75877427 -73639610 + L1_Mur3 LINE L1 1299 1993 -3887 6 1163 786 294 34 0 chr6 75877428 75877632 -73639405 - B3 SINE B2 -4 212 2 6 1163 24 53 0 0 chr6 75878188 75878226 -73638811 + AT_rich Low_complexity Low_complexity 1 38 0 6 1163 525 322 0 62 chr6 75878327 75878489 -73638548 - RSINE1 SINE B4 -2 163 12 6 1163 2411 31 10 0 chr6 75879309 75879600 -73637437 - L1Md_F3 LINE L1 -17 6567 6274 6 1163 2185 94 6 16 chr6 75879639 75879953 -73637084 - MTB LTR MaLR -89 311 1 6 1163 1313 106 14 5 chr6 75880156 75880364 -73636673 + L1_Mus3 LINE L1 6420 6629 -9 6 1163 264 59 0 0 chr6 75880549 75880583 -73636454 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 6 1163 3184 159 67 9 chr6 75880583 75881156 -73635881 - Lx3C LINE L1 -10 6966 6356 6 1163 23 33 0 0 chr6 75883662 75883692 -73633345 + AT_rich Low_complexity Low_complexity 1 30 0 6 1163 5914 80 17 2 chr6 75883815 75884628 -73632409 - L1Md_F2 LINE L1 -2 6580 5756 6 1163 457 368 45 35 chr6 75885721 75886008 -73631029 + B4A SINE B4 1 290 -2 6 1163 181 254 53 107 chr6 75886284 75886359 -73630678 - MIR SINE MIR -65 143 73 6 1163 199 329 25 0 chr6 75886999 75887078 -73629959 + L3 LINE CR1 2791 2871 -1618 6 1163 1549 236 43 8 chr6 75889073 75889444 -73627593 + ORR1C2 LTR MaLR 1 384 0 6 1163 585 0 0 0 chr6 75889785 75889850 -73627187 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1163 189 0 0 0 chr6 75889850 75889870 -73627167 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1163 342 98 0 0 chr6 75890351 75890402 -73626635 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 6 1163 695 276 75 23 chr6 75890500 75890674 -73626363 + B3 SINE B2 2 184 -32 6 1164 363 182 0 0 chr6 75890708 75890785 -73626252 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1164 28 0 0 0 chr6 75891195 75891223 -73625814 + AT_rich Low_complexity Low_complexity 1 28 0 6 1164 4259 79 2 0 chr6 75891495 75892055 -73624982 - L1_Mus1 LINE L1 -3 6564 6004 6 1164 5929 111 9 2 chr6 75892056 75893043 -73623994 + L1_Mus1 LINE L1 4952 5948 -619 6 1164 365 293 120 84 chr6 75893043 75893352 -73623685 - Tigger6a DNA MER2_type -763 320 1 6 1164 410 320 78 62 chr6 75894524 75894767 -73622270 - RLTR18 LTR ERVK 0 616 370 6 1164 1190 98 39 1 chr6 75894822 75895021 -73622016 + L1_Mus1 LINE L1 6337 6579 -3 6 1164 394 325 79 67 chr6 75895062 75895316 -73621721 - RLTR18 LTR ERVK -327 289 33 6 1164 402 176 9 53 chr6 75895372 75895486 -73621551 + L1Md_F3 LINE L1 6471 6579 -5 6 1164 759 315 4 18 chr6 75895634 75895860 -73621177 + Lx9 LINE L1 6559 6781 -863 6 1164 2119 82 10 3 chr6 75895892 75896200 -73620837 - BGLII LTR ERVK -111 310 1 6 1164 2956 246 36 8 chr6 75896204 75896929 -73620108 + Lx9 LINE L1 6674 7418 -226 6 1164 189 0 0 0 chr6 75896929 75896950 -73620087 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1164 741 197 43 38 chr6 75896958 75897143 -73619894 - RLTR23 LTR ERV1 -5 425 240 6 1164 818 174 44 141 chr6 75897180 75897428 -73619609 - RLTR23 LTR ERV1 -199 231 8 6 1164 2142 163 76 76 chr6 75897438 75897884 -73619153 - RLTR41 LTR ERV1 0 446 1 6 1164 419 233 8 17 chr6 75897898 75898016 -73619021 + Lx9 LINE L1 7519 7635 -9 6 1164 237 351 32 11 chr6 75898360 75898455 -73618582 + B1F SINE Alu 5 101 -48 6 1164 1167 312 64 18 chr6 75898587 75899214 -73617823 - Lx8 LINE L1 -2 7471 6816 6 1164 4895 55 2 5 chr6 75900178 75900802 -73616235 + L1Md_F2 LINE L1 5958 6579 -3 6 1164 257 359 70 21 chr6 75901639 75901881 -73615156 - Arthur1 DNA Tip100 -409 3538 3285 6 1164 21 0 0 0 chr6 75902163 75902184 -73614853 + AT_rich Low_complexity Low_complexity 1 21 0 6 1164 1668 194 6 66 chr6 75906431 75906779 -73610258 + ORR1A4 LTR MaLR 1 327 -2 6 1164 362 306 114 74 chr6 75907421 75907852 -73609185 - L1MC LINE L1 -2118 4028 3581 6 1164 26 30 0 0 chr6 75907922 75907955 -73609082 + AT_rich Low_complexity Low_complexity 1 33 0 6 1164 3624 137 5 42 chr6 75907970 75908358 -73608679 + L1VL4 LINE L1 369 732 -5570 6 1164 3166 112 12 12 chr6 75908358 75908839 -73608198 + L1_Mus3 LINE L1 6158 6638 0 6 1164 3624 137 5 42 chr6 75908839 75909074 -73607963 + L1VL4 LINE L1 733 968 -5334 6 1164 642 49 12 2 chr6 75909873 75909970 -73607067 + L1_Mm LINE L1 5181 5286 -597 6 1164 3512 15 2 0 chr6 75909970 75910365 -73606672 + MTA_Mm LTR MaLR 1 396 0 6 1164 4354 76 42 13 chr6 75910365 75911335 -73605702 + MTA_Mm-int LTR MaLR 1 1098 0 6 1164 3525 13 2 0 chr6 75911335 75911730 -73605307 + MTA_Mm LTR MaLR 1 396 0 6 1164 2671 16 0 0 chr6 75911730 75912034 -73605003 + L1Md_T LINE L1 5282 5585 -298 6 1164 8346 37 0 0 chr6 75912035 75913031 -73604006 + L1Md_T LINE L1 5587 6582 0 6 1164 1684 207 3 3 chr6 75913273 75913612 -73603425 - L1_Mur2 LINE L1 -231 5646 5308 6 1164 590 105 21 0 chr6 75913616 75913711 -73603326 + (GAAAA)n Simple_repeat Simple_repeat 3 99 0 6 1164 1013 136 6 0 chr6 75913738 75913915 -73603122 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 6 1164 191 125 25 0 chr6 75913915 75913955 -73603082 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 6 1164 1243 113 27 5 chr6 75913969 75914155 -73602882 - B2_Mm2 SINE B2 -3 192 3 6 1164 588 190 18 60 chr6 75914157 75914325 -73602712 - L1_Mur2 LINE L1 -581 5296 5136 6 1164 4016 207 63 22 chr6 75914333 75915266 -73601771 + Lx5 LINE L1 5670 6640 -410 6 1164 642 179 62 0 chr6 75915268 75915413 -73601624 + Lx3B LINE L1 6816 6969 -4 6 1164 29 0 0 0 chr6 75915422 75915451 -73601586 + AT_rich Low_complexity Low_complexity 1 29 0 6 1164 307 132 38 0 chr6 75915472 75915525 -73601512 + Lx5 LINE L1 6636 6690 -360 6 1164 5445 15 0 0 chr6 75915962 75916578 -73600459 + L1Md_T LINE L1 5967 6582 0 6 1164 35 24 0 0 chr6 75916592 75916634 -73600403 + AT_rich Low_complexity Low_complexity 1 42 0 6 1164 318 313 157 9 chr6 75916634 75916850 -73600187 - L1M3 LINE L1 -2045 4095 3848 6 1164 327 49 0 0 chr6 75916909 75916950 -73600087 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1164 480 254 63 106 chr6 75918850 75919057 -73597980 - B3A SINE B2 0 198 1 6 1164 332 333 81 0 chr6 75919058 75919232 -73597805 - Lx8 LINE L1 -132 7341 7154 6 1164 1795 201 171 28 chr6 75920590 75921151 -73595886 - RMER13B LTR ERVK 0 908 190 6 1164 6863 158 16 8 chr6 75921151 75922144 -73594893 + L1_Mus4 LINE L1 4886 5889 -747 6 1164 2169 81 122 14 chr6 75922144 75922496 -73594541 - RLTR10 LTR ERVK 0 390 1 6 1164 6863 114 14 13 chr6 75922496 75923242 -73593795 + L1_Mus4 LINE L1 5890 6626 -10 6 1164 213 39 0 0 chr6 75923242 75923268 -73593769 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 6 1164 365 158 13 13 chr6 75923293 75923370 -73593667 - Lx9 LINE L1 -164 7480 7404 6 1164 268 387 71 0 chr6 75923472 75923640 -73593397 + B4A SINE B4 83 262 -30 6 1164 201 74 0 0 chr6 75923649 75923676 -73593361 + (CATA)n Simple_repeat Simple_repeat 2 28 0 6 1164 4163 122 99 57 chr6 75924276 75924308 -73592729 + Lx LINE L1 5833 5864 -790 6 1164 234 0 0 0 chr6 75924308 75924334 -73592703 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1164 4163 122 99 57 chr6 75924334 75924366 -73592671 + Lx LINE L1 5865 5871 -783 6 1164 1323 102 5 0 chr6 75924366 75924552 -73592485 + B2_Mm1t SINE B2 2 188 -5 6 1164 4163 122 99 57 chr6 75924552 75924563 -73592474 + Lx LINE L1 5872 5874 -780 6 1164 261 0 0 0 chr6 75924563 75924592 -73592445 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1164 4163 122 99 57 chr6 75924592 75924786 -73592251 + Lx LINE L1 5875 6114 -540 6 1164 3331 43 2 0 chr6 75924786 75925181 -73591856 - MTA_Mm LTR MaLR 0 396 1 6 1164 4163 122 99 57 chr6 75925181 75925697 -73591340 + Lx LINE L1 6115 6653 -1 6 1164 393 369 8 8 chr6 75925818 75925941 -73591096 + RSINE1 SINE B4 2 124 -41 6 1164 26 0 0 0 chr6 75926011 75926037 -73591000 + AT_rich Low_complexity Low_complexity 1 26 0 6 1164 351 60 0 0 chr6 75926057 75926107 -73590930 + (T)n Simple_repeat Simple_repeat 1 50 0 6 1164 753 98 0 12 chr6 75926107 75926233 -73590804 - B1_Mus1 SINE Alu 0 148 31 6 1164 292 326 21 43 chr6 75926198 75926291 -73590746 + RSINE1 SINE B4 34 124 -41 6 1164 373 0 58 0 chr6 75926363 75926415 -73590622 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 1164 1033 101 0 0 chr6 75926415 75926554 -73590483 - B1_Mus1 SINE Alu -9 139 1 6 1164 3469 198 15 27 chr6 75926838 75927553 -73589484 - RMER6D LTR ERVK -13 707 1 6 1164 2221 190 34 11 chr6 75927555 75928024 -73589013 - RMER6-int LTR ERVK -3 3174 2695 6 1164 19504 70 20 8 chr6 75928024 75931249 -73585788 + L1Md_A LINE L1 622 3880 -2003 6 1164 248 149 0 0 chr6 75931249 75931296 -73585741 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 6 1164 292 100 20 0 chr6 75931298 75931348 -73585689 - L1Md_A LINE L1 -5805 919 869 6 1164 477 0 0 0 chr6 75931353 75931406 -73585631 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1164 3109 54 0 0 chr6 75931406 75931796 -73585241 + L1Md_F3 LINE L1 6181 6570 -14 6 1164 186 43 0 0 chr6 75932448 75932471 -73584566 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 6 1164 11446 201 48 23 chr6 75932473 75934469 -73582568 - RMER6-int LTR ERVK -4521 4438 731 6 1164 310 162 0 14 chr6 75934469 75934538 -73582499 - Lx2 LINE L1 -1 6996 6929 6 1164 11446 198 46 23 chr6 75934538 75935247 -73581790 - RMER6-int LTR ERVK -2447 730 1 6 1164 1727 255 17 5 chr6 75935247 75935649 -73581388 - RMER6D LTR ERVK 0 720 314 6 1164 3048 185 97 3 chr6 75935822 75936441 -73580596 + RLTR33 LTR ERVK 1 677 -1 6 1164 1050 187 17 40 chr6 75936446 75936724 -73580313 - RMER6D LTR ERVK -397 323 3 6 1164 367 286 0 0 chr6 75936886 75936963 -73580074 - B3 SINE B2 -10 206 130 6 1164 32 43 0 0 chr6 75937067 75937113 -73579924 + AT_rich Low_complexity Low_complexity 1 46 0 6 1164 24 32 0 0 chr6 75938128 75938159 -73578878 + AT_rich Low_complexity Low_complexity 1 31 0 6 1164 234 250 32 32 chr6 75938207 75938269 -73578768 + Lx8 LINE L1 7048 7109 -364 6 1164 183 42 0 0 chr6 75939201 75939225 -73577812 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1164 39 88 0 0 chr6 75939747 75939849 -73577188 + AT_rich Low_complexity Low_complexity 1 102 0 7 1164 297 341 122 50 chr6 75940654 75940837 -73576200 + Lx8 LINE L1 7148 7329 -144 6 1164 281 26 26 0 chr6 75940837 75940875 -73576162 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1164 297 341 122 50 chr6 75940875 75940993 -73576044 + Lx8 LINE L1 7330 7471 -2 6 1164 195 114 0 0 chr6 75941994 75942029 -73575008 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 7 1164 18029 173 34 18 chr6 75942191 75946683 -73570354 + L1VL4 LINE L1 362 4931 -952 7 1164 206 121 0 0 chr6 75946683 75946716 -73570321 + (TA)n Simple_repeat Simple_repeat 1 33 0 7 1164 7684 55 4 8 chr6 75946724 75947692 -73569345 - L1_Mus1 LINE L1 -6 6561 5598 7 1164 6014 128 8 11 chr6 75947658 75948599 -73568438 + L1_Mus4 LINE L1 5698 6636 0 7 1164 30 27 0 0 chr6 75948899 75948936 -73568101 + AT_rich Low_complexity Low_complexity 1 37 0 7 1164 593 192 0 8 chr6 75948991 75949122 -73567915 + C-rich Low_complexity Low_complexity 1 130 0 7 1164 2149 244 42 32 chr6 75949122 75949647 -73567390 - Lx5 LINE L1 -36 7014 6485 7 1164 1148 223 231 3 chr6 75950478 75950807 -73566230 - Lx6 LINE L1 -738 6722 6319 7 1164 392 366 45 0 chr6 75950852 75950986 -73566051 - RSINE1 SINE B4 -22 143 4 7 1164 477 0 0 0 chr6 75952038 75952091 -73564946 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 1164 1296 304 35 25 chr6 75953155 75953523 -73563514 - MTEa LTR MaLR -5 374 3 7 1164 601 331 12 12 chr6 75954373 75954538 -73562499 + B3A SINE B2 1 165 -33 7 1164 314 164 43 56 chr6 75954554 75954715 -73562322 + (CA)n Simple_repeat Simple_repeat 1 159 0 7 1164 25 0 0 0 chr6 75954723 75954748 -73562289 + AT_rich Low_complexity Low_complexity 1 25 0 7 1164 4887 124 61 16 chr6 75955549 75956037 -73561000 - RMER17D LTR ERVK -4 885 368 7 1164 1119 89 0 0 chr6 75956037 75956194 -73560843 + (GGGGA)n Simple_repeat Simple_repeat 4 160 0 7 1164 4887 124 61 16 chr6 75956194 75956552 -73560485 - RMER17D LTR ERVK -522 367 1 7 1164 392 244 44 28 chr6 75956679 75956904 -73560133 + L1VL4 LINE L1 1341 1476 -2438 7 1164 1007 230 12 31 chr6 75956907 75957226 -73559811 + L1VL4 LINE L1 1849 2161 -3725 7 1164 405 198 0 0 chr6 75957232 75957313 -73559724 + RMER1C Other Other 1255 1335 -7 7 1164 483 63 0 0 chr6 75957438 75957501 -73559536 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 7 1164 24 32 0 0 chr6 75957620 75957651 -73559386 + AT_rich Low_complexity Low_complexity 1 31 0 7 1164 431 348 28 0 chr6 75960060 75960238 -73556799 - Lx8 LINE L1 -884 6589 6407 7 1164 485 243 97 7 chr6 75960248 75960338 -73556699 - L1_Rod LINE L1 -77 5770 5680 7 1164 497 16 16 0 chr6 75960338 75960400 -73556637 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 7 1164 485 243 97 7 chr6 75960400 75960454 -73556583 - L1_Rod LINE L1 -168 5679 5613 7 1164 1168 287 34 18 chr6 75960483 75960857 -73556180 + MTD LTR MaLR 17 389 -30 7 1164 7839 39 5 6 chr6 75960858 75962305 -73554732 - L1Md_F2 LINE L1 -12 6570 5120 7 1164 231 204 0 0 chr6 75962307 75962351 -73554686 + MTD LTR MaLR 376 419 0 7 1164 187 300 20 100 chr6 75962526 75962626 -73554411 + L3 LINE CR1 704 795 -3694 7 1164 304 265 64 58 chr6 75962626 75962798 -73554239 - L1MC4a LINE L1 -691 7191 7019 7 1164 1316 304 115 77 chr6 75962816 75963850 -73553187 - Lx8 LINE L1 -4 7469 6397 7 1164 569 315 79 43 chr6 75963853 75964451 -73552586 - L1_Rod LINE L1 -80 5767 5149 7 1164 387 253 38 19 chr6 75964481 75964638 -73552399 - L1_Mur3 LINE L1 -1310 4570 4411 7 1164 235 104 42 0 chr6 75964810 75964858 -73552179 + (TA)n Simple_repeat Simple_repeat 2 51 0 7 1164 5482 195 18 7 chr6 75965064 75965374 -73551663 + L1_Mur2 LINE L1 4528 4846 -1031 7 1164 3096 34 39 3 chr6 75965374 75965756 -73551281 + MTA_Mm LTR MaLR 1 396 0 7 1164 5482 195 18 7 chr6 75965756 75966606 -73550431 + L1_Mur2 LINE L1 4847 5701 -176 7 1164 461 331 74 34 chr6 75966869 75967044 -73549993 - B3A SINE B2 -16 182 1 7 1164 324 367 90 116 chr6 75967179 75967456 -73549581 + B4A SINE B4 2 271 -21 7 1164 21 57 0 0 chr6 75967567 75967602 -73549435 + AT_rich Low_complexity Low_complexity 1 35 0 7 1164 218 160 40 0 chr6 75967746 75967796 -73549241 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 7 1164 358 307 133 0 chr6 75967901 75968051 -73548986 - L1M2 LINE L1 -472 5819 5650 7 1164 180 182 0 0 chr6 75968170 75968214 -73548823 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 1164 558 71 0 0 chr6 75968214 75968298 -73548739 + (TG)n Simple_repeat Simple_repeat 1 84 0 7 1164 324 0 0 0 chr6 75968298 75968333 -73548704 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 1164 458 157 0 10 chr6 75969689 75969792 -73547245 + (TG)n Simple_repeat Simple_repeat 2 103 0 7 1164 295 214 12 0 chr6 75970611 75970695 -73546342 + Lx9 LINE L1 7524 7608 -36 7 1164 1299 72 50 0 chr6 75970853 75971033 -73546004 - B2_Mm2 SINE B2 -5 190 2 7 1164 689 243 103 58 chr6 75971071 75971400 -73545637 + RLTR20C LTR ERVK 1 463 -105 7 1164 351 0 0 0 chr6 75971400 75971439 -73545598 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1164 339 293 103 39 chr6 75971439 75971532 -73545505 + RLTR20C LTR ERVK 464 567 -1 7 1164 560 326 0 0 chr6 75971542 75971671 -73545366 - RSINE1 SINE B4 -36 129 1 7 1164 522 0 0 0 chr6 75973660 75973718 -73543319 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 7 1164 459 0 0 0 chr6 75973734 75973785 -73543252 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1164 387 41 0 0 chr6 75973785 75973833 -73543204 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1164 387 327 10 10 chr6 75974267 75974369 -73542668 + RSINE1 SINE B4 36 137 -28 7 1164 204 158 0 0 chr6 75974385 75974423 -73542614 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 7 1164 320 200 0 14 chr6 75975262 75975333 -73541704 - Lx7 LINE L1 -867 6829 6760 7 1164 2706 232 95 30 chr6 75975327 75976021 -73541016 + Lx7 LINE L1 6808 7559 -137 7 1164 180 77 0 0 chr6 75976021 75976047 -73540990 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1164 2706 232 95 30 chr6 75976047 75976187 -73540850 + Lx7 LINE L1 7560 7696 0 7 1164 25 31 0 0 chr6 75976187 75976219 -73540818 + AT_rich Low_complexity Low_complexity 1 32 0 7 1164 467 331 47 37 chr6 75976400 75976591 -73540446 + RMER5 LTR ERV1 132 324 -210 7 1164 452 312 142 14 chr6 75976616 75976834 -73540203 + B4A SINE B4 3 248 -44 7 1164 429 300 60 22 chr6 75976903 75977087 -73539950 + RMER5 LTR ERV1 335 525 -9 7 1164 510 46 0 0 chr6 75977567 75977632 -73539405 + (TC)n Simple_repeat Simple_repeat 1 65 0 7 1164 360 43 0 0 chr6 75977633 75977679 -73539358 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 7 1164 268 290 0 0 chr6 75977777 75977839 -73539198 - B1F SINE Alu -82 67 6 7 1164 438 20 0 0 chr6 75978042 75978093 -73538944 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1164 34258 81 5 12 chr6 75978318 75984296 -73532741 + L1Md_F3 LINE L1 423 6353 -231 7 1164 1471 70 0 0 chr6 75984393 75984593 -73532444 - L1Md_F2 LINE L1 -11 6571 6372 7 1164 277 190 38 12 chr6 75985209 75985289 -73531748 + (TA)n Simple_repeat Simple_repeat 1 82 0 7 1164 287 339 0 85 chr6 75985370 75985499 -73531538 + B2_Mm2 SINE B2 6 123 -72 7 1164 339 65 0 0 chr6 75985516 75985562 -73531475 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 1164 451 359 22 13 chr6 75985658 75985884 -73531153 + Lx9 LINE L1 7047 7274 -370 7 1164 16825 139 28 11 chr6 75985882 75989344 -73527693 - L1Md_F LINE L1 -1961 3922 398 7 1164 260 359 12 61 chr6 75989563 75989726 -73527311 + RSINE1 SINE B4 5 159 -6 7 1164 200 119 33 33 chr6 75989753 75989814 -73527223 + (TAA)n Simple_repeat Simple_repeat 2 62 0 7 1164 492 109 10 10 chr6 75990539 75990641 -73526396 - L1_Mus3 LINE L1 -2 6636 6535 7 1164 557 76 0 25 chr6 75990776 75990857 -73526180 - Lx LINE L1 -903 5751 5673 7 1164 3701 129 10 5 chr6 75990863 75991454 -73525583 + L1_Mus4 LINE L1 6037 6630 -6 7 1164 183 375 8 32 chr6 75991757 75991881 -73525156 + MIRb SINE MIR 60 180 -88 7 1164 378 129 0 0 chr6 75992111 75992173 -73524864 + (TC)n Simple_repeat Simple_repeat 2 63 0 7 1164 612 70 0 0 chr6 75992174 75992260 -73524777 + (CA)n Simple_repeat Simple_repeat 2 87 0 7 1164 469 362 27 32 chr6 75992262 75992664 -73524373 - Lx9 LINE L1 -180 7464 7065 7 1164 664 300 33 14 chr6 75992662 75992875 -73524162 + Lx9 LINE L1 6752 6968 -676 7 1164 432 0 0 0 chr6 75993205 75993253 -73523784 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1164 428 301 33 33 chr6 75995298 75995508 -73521529 + L1_Rod LINE L1 5611 5820 -27 7 1164 222 217 43 0 chr6 75995565 75995634 -73521403 + (TA)n Simple_repeat Simple_repeat 1 72 0 7 1164 382 143 26 0 chr6 75995758 75995835 -73521202 + CT-rich Low_complexity Low_complexity 3 81 0 7 1164 32 81 0 0 chr6 75995985 75996059 -73520978 + AT_rich Low_complexity Low_complexity 1 74 0 7 1164 989 316 42 14 chr6 75996592 75996952 -73520085 + ORR1D2 LTR MaLR 1 370 0 7 1164 27 0 0 0 chr6 75997087 75997114 -73519923 + AT_rich Low_complexity Low_complexity 1 27 0 7 1164 345 307 121 34 chr6 75997472 75997769 -73519268 + L1MB2 LINE L1 5847 6169 -2 7 1164 4223 71 5 19 chr6 75997858 75998430 -73518607 + LTRIS2 LTR ERV1 1 564 0 7 1164 26 50 0 0 chr6 75998452 75998492 -73518545 + AT_rich Low_complexity Low_complexity 1 40 0 7 1164 267 104 0 0 chr6 75998611 75998659 -73518378 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 7 1164 1852 269 12 27 chr6 75998663 75999179 -73517858 + Lx5 LINE L1 6543 7050 0 7 1164 207 0 0 0 chr6 76000603 76000626 -73516411 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1164 189 186 0 0 chr6 76001855 76001879 -73515158 + (CATATA)n Simple_repeat Simple_repeat 2 25 0 2 1164 336 24 0 0 chr6 76001879 76001920 -73515117 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 3 1164 189 186 0 0 chr6 76001920 76001938 -73515099 + (CATATA)n Simple_repeat Simple_repeat 2 19 0 4 1164 229 247 40 101 chr6 76002187 76002286 -73514751 + PB1D10 SINE Alu 24 116 -1 5 1164 204 197 49 0 chr6 76002289 76002350 -73514687 + A-rich Low_complexity Low_complexity 5 68 0 6 1164 40 37 0 0 chr6 76002615 76002669 -73514368 + AT_rich Low_complexity Low_complexity 1 54 0 7 1164 21 0 0 0 chr6 76003744 76003765 -73513272 + AT_rich Low_complexity Low_complexity 1 21 0 8 1164 592 293 74 94 chr6 76004133 76004592 -73512445 - Lx8 LINE L1 -25 7448 6999 9 1164 1143 178 20 16 chr6 76004684 76004929 -73512108 + Lx2B LINE L1 5916 6161 -839 1 1164 1953 233 158 15 chr6 76004931 76005455 -73511582 + RMER13A LTR ERVK 3 601 -259 1 1164 822 207 0 7 chr6 76005719 76005870 -73511167 + URR1B DNA MER1_type 2 151 -74 1 1164 1787 150 3 3 chr6 76005870 76006164 -73510873 + Lx2A1 LINE L1 6715 7008 0 1 1164 26 0 0 0 chr6 76006178 76006204 -73510833 + AT_rich Low_complexity Low_complexity 1 26 0 1 1164 312 271 0 0 chr6 76006348 76006418 -73510619 - ID4_ SINE ID -13 70 1 1 1164 507 340 22 85 chr6 76006507 76006777 -73510260 + RMER13A LTR ERVK 596 848 -12 1 1164 3270 230 42 29 chr6 76006791 76007632 -73509405 + Lx2B LINE L1 6149 7000 0 1 1164 913 93 7 19 chr6 76007638 76007792 -73509245 + L1_Mus4 LINE L1 6478 6629 -7 1 1164 208 243 14 0 chr6 76008233 76008303 -73508734 + (CATA)n Simple_repeat Simple_repeat 2 72 0 1 1164 283 383 45 13 chr6 76008463 76008619 -73508418 - MLT1F2 LTR MaLR -34 526 366 1 1164 19516 99 18 30 chr6 76010033 76010663 -73506374 - L1_Mur1 LINE L1 -1539 4347 3732 1 1164 2764 97 8 5 chr6 76010663 76011055 -73505982 - L1_Mus3 LINE L1 -4 6634 6242 2 1164 19516 100 18 30 chr6 76011055 76013631 -73503406 - L1_Mur1 LINE L1 -2155 3731 1181 1 1164 512 121 0 114 chr6 76013631 76013646 -73503391 - Lx LINE L1 -2 6652 6639 2 1164 558 0 0 0 chr6 76013646 76013708 -73503329 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 2 1164 512 121 0 114 chr6 76013708 76013823 -73503214 - Lx LINE L1 -16 6638 6537 2 1164 3706 152 15 2 chr6 76013849 76014461 -73502576 - L1_Mm LINE L1 0 5883 5264 2 1164 1595 142 0 0 chr6 76014462 76014722 -73502315 + L1_Mm LINE L1 4439 4698 -1185 2 1164 6053 162 54 25 chr6 76014720 76014928 -73502109 - L1_Mur1 LINE L1 -5798 1186 995 1 1164 1151 82 0 0 chr6 76014928 76015075 -73501962 - B1_Mm SINE Alu 0 147 1 2 1164 6053 162 54 25 chr6 76015075 76016017 -73501020 - L1_Mur1 LINE L1 -5990 994 3 1 1164 552 298 91 0 chr6 76016101 76016353 -73500684 - L1M3 LINE L1 -1243 4897 4623 2 1164 260 222 0 0 chr6 76016518 76016572 -73500465 + L1_Rod LINE L1 5112 5165 -682 2 1164 24 67 0 0 chr6 76020721 76020766 -73496271 + AT_rich Low_complexity Low_complexity 1 45 0 2 1164 594 267 66 81 chr6 76021417 76021687 -73495350 + RLTR15 LTR ERVK 3 276 -83 2 145 5193 37 0 2 chr6 76021687 76022308 -73494729 - L1Md_F3 LINE L1 -2 6582 5963 3 1165 594 267 66 81 chr6 76022308 76022371 -73494666 + RLTR15 LTR ERVK 277 331 -28 2 1165 36616 34 2 8 chr6 76022764 76028151 -73488886 + L1Md_A LINE L1 232 5586 -297 3 1165 8317 37 0 3 chr6 76028151 76029149 -73487888 + L1Md_T LINE L1 5587 6581 -1 3 1165 2065 302 84 67 chr6 76029546 76030978 -73486059 + MYSERV-int LTR ERVK 3775 5230 -1320 3 1165 248 267 51 39 chr6 76030978 76031056 -73485981 + RMER4B LTR ERVK 458 536 -49 3 1165 1675 191 100 50 chr6 76031085 76031467 -73485570 + MYSERV-int LTR ERVK 7856 8238 -721 3 1165 423 0 0 0 chr6 76031467 76031514 -73485523 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1165 1675 185 104 55 chr6 76031514 76031659 -73485378 + MYSERV-int LTR ERVK 8239 8370 -589 3 1165 315 145 25 38 chr6 76031659 76031738 -73485299 + Lx2 LINE L1 6854 6931 -66 3 1165 261 0 0 0 chr6 76032904 76032933 -73484104 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1165 414 0 0 0 chr6 76032933 76032978 -73484059 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1165 181 119 23 23 chr6 76033065 76033108 -73483929 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1165 491 327 25 25 chr6 76033112 76033275 -73483762 + B3A SINE B2 35 197 -1 4 1165 305 373 19 51 chr6 76033316 76033474 -73483563 - LTR33B LTR ERVL -298 205 53 4 1165 41 0 0 0 chr6 76033597 76033638 -73483399 + AT_rich Low_complexity Low_complexity 1 41 0 4 1165 568 330 30 45 chr6 76034135 76034335 -73482702 + B3A SINE B2 2 198 0 4 1165 435 19 0 0 chr6 76034390 76034442 -73482595 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 4 1165 26 0 0 0 chr6 76035297 76035323 -73481714 + AT_rich Low_complexity Low_complexity 1 26 0 4 1165 517 279 37 0 chr6 76036250 76036386 -73480651 + B1_Mur2 SINE Alu 3 143 -6 4 1165 269 197 14 0 chr6 76036441 76036512 -73480525 + GA-rich Low_complexity Low_complexity 3 74 0 4 1165 273 321 62 19 chr6 76036758 76036920 -73480117 - Lx9 LINE L1 -275 7369 7201 4 1165 657 249 89 19 chr6 76036916 76037186 -73479851 + Lx9 LINE L1 7356 7644 0 4 1165 21 0 0 0 chr6 76037246 76037267 -73479770 + AT_rich Low_complexity Low_complexity 1 21 0 4 1165 230 318 147 18 chr6 76037673 76037782 -73479255 + B4A SINE B4 1 123 -169 5 1165 206 86 57 0 chr6 76038076 76038111 -73478926 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1165 414 0 0 0 chr6 76038133 76038179 -73478858 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 5 1165 1477 323 74 5 chr6 76038369 76038976 -73478061 + Lx8 LINE L1 6371 7019 -454 5 1165 27 0 0 0 chr6 76039637 76039664 -73477373 + AT_rich Low_complexity Low_complexity 1 27 0 5 1165 606 28 0 0 chr6 76040103 76040175 -73476862 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1165 406 335 37 25 chr6 76040514 76040676 -73476361 - B3A SINE B2 -30 168 5 5 1165 271 0 0 49 chr6 76041347 76041388 -73475649 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 5 1165 1849 82 12 0 chr6 76041496 76041751 -73475286 - L1_Mus1 LINE L1 0 6567 6310 5 1165 311 347 58 44 chr6 76041981 76042186 -73474851 - L1MB5 LINE L1 -233 5941 5734 5 1165 560 296 84 0 chr6 76042192 76042371 -73474666 - B3 SINE B2 -4 212 19 6 1165 357 62 0 0 chr6 76042374 76042422 -73474615 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1165 333 262 80 40 chr6 76042469 76042620 -73474417 - L1MB5 LINE L1 -490 5690 5534 5 1165 740 95 0 0 chr6 76042649 76042765 -73474272 + L1_Mus1 LINE L1 6451 6566 -1 6 1165 251 241 34 11 chr6 76042808 76042896 -73474141 - L1MB5 LINE L1 -801 5379 5290 5 1165 234 278 39 49 chr6 76042975 76043077 -73473960 + L1_Mur3 LINE L1 5088 5188 -692 6 1165 667 223 22 32 chr6 76043103 76043288 -73473749 - B2_Mm2 SINE B2 -10 185 3 6 1165 214 217 12 24 chr6 76043403 76043488 -73473549 + CT-rich Low_complexity Low_complexity 4 87 0 6 1165 184 372 21 0 chr6 76044830 76044924 -73472113 + MIR3 SINE MIR 76 171 -37 6 1165 324 240 46 37 chr6 76044929 76045037 -73472000 - MTEb LTR MaLR -4 375 267 6 1165 423 0 0 0 chr6 76045485 76045532 -73471505 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1165 363 371 43 19 chr6 76045559 76045768 -73471269 - B4A SINE B4 -18 274 61 6 1165 330 240 120 37 chr6 76046575 76046683 -73470354 + MER5B DNA MER1_type 61 177 -1 7 1165 430 361 28 0 chr6 76046988 76047132 -73469905 + B4A SINE B4 60 207 -85 7 1165 720 286 84 64 chr6 76047224 76047583 -73469454 + MLT2D LTR ERVL 8 373 -41 7 1165 538 215 25 119 chr6 76048004 76048092 -73468945 - L1_Mur3 LINE L1 -3539 2341 2267 7 1165 1347 155 39 12 chr6 76048092 76048346 -73468691 - Lx3B LINE L1 -5 6968 6708 7 1165 538 215 25 119 chr6 76048346 76048453 -73468584 - L1_Mur3 LINE L1 -3614 2266 2162 7 1165 2552 55 3 50 chr6 76048453 76048796 -73468241 + IAPLTR2b LTR ERVK 1 327 0 7 1165 538 215 25 119 chr6 76048796 76048842 -73468195 - L1_Mur3 LINE L1 -3719 2161 2122 7 1165 7200 72 0 0 chr6 76048837 76049774 -73467263 - L1Md_F2 LINE L1 -513 5370 4434 7 1165 1934 47 0 0 chr6 76049774 76050007 -73467030 + L1Md_F2 LINE L1 5354 5586 -297 7 1165 8186 46 3 0 chr6 76050007 76050999 -73466038 + L1Md_F2 LINE L1 5587 6581 -1 7 1165 1354 186 90 44 chr6 76051006 76051064 -73465973 - L1_Mur3 LINE L1 -3754 2126 2072 7 1165 222 91 0 0 chr6 76051064 76051097 -73465940 + (TGG)n Simple_repeat Simple_repeat 1 33 0 7 1165 1354 186 90 44 chr6 76051097 76051120 -73465917 - L1_Mur3 LINE L1 -3809 2071 2058 7 1165 263 71 24 0 chr6 76051120 76051162 -73465875 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1165 1354 186 90 44 chr6 76051162 76051467 -73465570 - L1_Mur3 LINE L1 -3823 2057 1721 7 1165 1271 43 0 0 chr6 76051465 76051626 -73465411 - L1Md_F2 LINE L1 -12 6570 6410 7 1165 1257 188 48 21 chr6 76051624 76051956 -73465081 - L1_Mur3 LINE L1 -4155 1725 1385 7 1165 1246 200 56 12 chr6 76051956 76052295 -73464742 + L1_Mur3 LINE L1 2352 2705 -3175 8 1165 201 196 0 0 chr6 76052313 76052364 -73464673 + T-rich Low_complexity Low_complexity 1 51 0 8 1165 1075 153 42 5 chr6 76052364 76052555 -73464482 - Lx3B LINE L1 -77 6896 6699 8 1165 906 254 65 49 chr6 76052550 76053458 -73463579 + L1_Mur3 LINE L1 2745 3661 -2219 8 1165 525 44 0 0 chr6 76053466 76053534 -73463503 + (GGGA)n Simple_repeat Simple_repeat 4 71 0 8 1165 566 14 14 0 chr6 76053540 76053611 -73463426 + (GAAA)n Simple_repeat Simple_repeat 3 74 0 8 1165 2592 225 40 126 chr6 76053616 76054637 -73462400 + L1_Mur3 LINE L1 4668 5600 -280 8 1165 251 274 10 10 chr6 76054621 76054717 -73462320 + Lx9 LINE L1 6886 6981 -663 8 1165 1292 128 0 0 chr6 76054841 76055029 -73462008 - Lx3A LINE L1 -319 6662 6475 8 1165 1383 144 52 19 chr6 76055029 76055298 -73461739 + Lx3A LINE L1 6704 6981 0 8 1165 21 0 0 0 chr6 76055302 76055323 -73461714 + AT_rich Low_complexity Low_complexity 1 21 0 8 1165 2970 32 0 0 chr6 76055621 76055967 -73461070 - ORR1A0 LTR MaLR 0 346 1 8 1165 23 0 0 0 chr6 76055982 76056005 -73461032 + AT_rich Low_complexity Low_complexity 1 23 0 8 1165 293 281 0 0 chr6 76056573 76056655 -73460382 - L1MC1 LINE L1 -193 6140 6059 9 1165 261 0 0 0 chr6 76057680 76057709 -73459328 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1165 365 364 0 0 chr6 76057709 76057808 -73459229 - PB1D7 SINE Alu -11 109 11 9 1165 639 311 116 60 chr6 76058105 76058485 -73458552 - MTD LTR MaLR 0 419 19 9 1165 1253 82 33 5 chr6 76058764 76058948 -73458089 + BGLII LTR ERVK 1 189 -232 9 1165 968 99 0 7 chr6 76058948 76059100 -73457937 + (GAA)n Simple_repeat Simple_repeat 3 153 0 9 1165 577 188 28 63 chr6 76059100 76059204 -73457833 + BGLII LTR ERVK 246 341 -80 9 1165 840 267 40 32 chr6 76059207 76059455 -73457582 - Lx6 LINE L1 -26 7434 7185 9 1165 198 0 0 0 chr6 76059880 76059902 -73457135 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 9 1165 2761 216 45 7 chr6 76059925 76060484 -73456553 - Lx5 LINE L1 -2 7048 6469 9 1165 458 278 0 34 chr6 76061050 76061169 -73455868 + B3 SINE B2 1 115 -101 9 1165 716 189 184 0 chr6 76061189 76061379 -73455658 - URR1B DNA MER1_type 0 225 1 1 1165 401 333 0 130 chr6 76062048 76062379 -73454658 - B4A SINE B4 -4 288 1 1 1165 3184 68 0 2 chr6 76062583 76062980 -73454057 - MTA_Mm LTR MaLR 0 396 1 1 1165 8242 65 13 5 chr6 76062980 76064069 -73452968 - MTA_Mm-int LTR MaLR 0 1098 1 1 1165 347 62 0 0 chr6 76064072 76064120 -73452917 + MTB LTR MaLR 353 400 0 1 1165 936 228 69 13 chr6 76064548 76064779 -73452258 + Lx6 LINE L1 7038 7281 -179 1 1165 337 293 6 87 chr6 76064804 76064965 -73452072 + Lx9 LINE L1 6992 7139 -505 1 1165 280 360 45 25 chr6 76064989 76065146 -73451891 + Lx8 LINE L1 7100 7259 -214 1 1165 474 114 0 0 chr6 76065168 76065247 -73451790 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1165 1510 223 88 0 chr6 76065719 76066060 -73450977 + ORR1C1 LTR MaLR 1 371 -7 1 1165 21 0 0 0 chr6 76066155 76066176 -73450861 + AT_rich Low_complexity Low_complexity 1 21 0 1 1165 261 188 16 14 chr6 76066345 76066424 -73450613 + Lx2B LINE L1 6922 7000 0 1 1165 772 325 47 41 chr6 76066866 76067334 -73449703 + RMER5 LTR ERV1 48 518 -16 1 1165 471 367 114 57 chr6 76067362 76067819 -73449218 - MER77 LTR ERVL -115 492 10 1 1165 1125 145 16 0 chr6 76068375 76068561 -73448476 - B2_Mm1t SINE B2 -4 189 1 1 1165 517 373 25 0 chr6 76068706 76068864 -73448173 + B3A SINE B2 1 162 -36 1 1165 453 36 0 0 chr6 76068870 76068925 -73448112 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1165 225 94 0 0 chr6 76068942 76068974 -73448063 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 1165 409 269 58 48 chr6 76069349 76069556 -73447481 - Lx8 LINE L1 -1 7472 7264 1 1165 321 26 0 0 chr6 76069599 76069637 -73447400 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1165 483 363 70 52 chr6 76069642 76069912 -73447125 - B4 SINE B4 -17 275 1 1 1165 556 318 72 28 chr6 76070400 76070548 -73446489 + B3A SINE B2 2 161 -37 1 1165 294 73 0 0 chr6 76070548 76070589 -73446448 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1165 556 318 72 28 chr6 76070589 76070621 -73446416 + B3A SINE B2 162 190 -8 1 1165 1718 133 0 4 chr6 76070650 76070922 -73446115 - Lx LINE L1 -12 6642 6372 1 1165 23 33 0 0 chr6 76071117 76071147 -73445890 + AT_rich Low_complexity Low_complexity 1 30 0 1 1165 250 318 14 0 chr6 76073077 76073164 -73443873 + PB1D7 SINE Alu 27 115 -34 1 1165 362 289 61 73 chr6 76073306 76073470 -73443567 + B3A SINE B2 37 198 0 1 1165 231 133 0 0 chr6 76074204 76074249 -73442788 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1165 216 0 0 0 chr6 76075043 76075067 -73441970 + (GAAA)n Simple_repeat Simple_repeat 4 27 0 1 1165 27 0 0 0 chr6 76075721 76075748 -73441289 + AT_rich Low_complexity Low_complexity 1 27 0 1 1165 1885 225 25 19 chr6 76076316 76076788 -73440249 + Lx9 LINE L1 6998 7472 -172 1 1165 803 294 73 49 chr6 76077571 76077939 -73439098 + MTE2a LTR MaLR 3 379 0 1 1165 450 0 0 0 chr6 76078345 76078395 -73438642 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1165 276 295 10 21 chr6 76078483 76078580 -73438457 + Lx2B LINE L1 6885 6980 -20 1 1165 342 0 0 0 chr6 76079171 76079209 -73437828 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1165 562 257 62 120 chr6 76079558 76079600 -73437437 - B3A SINE B2 0 198 163 1 1165 2474 186 42 73 chr6 76079600 76079937 -73437100 + RMER6C LTR ERVK 1 333 -357 1 1165 450 0 0 0 chr6 76079937 76079987 -73437050 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1165 2474 186 42 73 chr6 76079987 76080361 -73436676 + RMER6C LTR ERVK 334 689 -1 1 1165 562 257 62 120 chr6 76080361 76080434 -73436603 - B3A SINE B2 -36 162 107 1 1165 2161 39 21 21 chr6 76080434 76080719 -73436318 - L1Md_F3 LINE L1 -1 6583 6299 1 1165 562 257 62 120 chr6 76080719 76080810 -73436227 - B3A SINE B2 -92 106 3 1 1165 202 29 28 28 chr6 76080957 76080993 -73436044 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1 1165 820 136 21 0 chr6 76080997 76081137 -73435900 - B1_Mus2 SINE Alu 0 147 5 1 1165 292 302 38 120 chr6 76081000 76081158 -73435879 - B4 SINE B4 -69 223 79 1 1165 250 231 15 0 chr6 76081119 76081184 -73435853 - PB1D10 SINE Alu -37 80 15 1 1165 287 258 22 0 chr6 76082278 76082367 -73434670 + GA-rich Low_complexity Low_complexity 2 92 0 1 1165 565 338 39 29 chr6 76082391 76082671 -73434366 + B4A SINE B4 3 285 -7 1 1165 813 227 64 29 chr6 76082943 76083147 -73433890 - ORR1C1 LTR MaLR 0 384 174 1 1165 781 149 11 17 chr6 76083155 76083333 -73433704 + GA-rich Low_complexity Low_complexity 1 177 0 1 1165 628 244 43 65 chr6 76083339 76083523 -73433514 - ORR1C1 LTR MaLR -192 182 3 1 1165 1031 181 64 18 chr6 76083525 76083744 -73433293 - ORR1C1-int LTR MaLR 0 1370 1142 1 1165 1249 285 101 29 chr6 76083771 76084215 -73432822 - ORR1C1-int LTR MaLR -352 1018 543 1 1165 1912 274 36 38 chr6 76084220 76084773 -73432264 - Lx6 LINE L1 -13 7447 6896 1 1165 602 60 12 0 chr6 76084776 76084859 -73432178 + (TC)n Simple_repeat Simple_repeat 2 85 0 1 1165 2204 268 35 12 chr6 76084863 76085081 -73431956 - Lx6 LINE L1 -731 6729 6498 1 1165 1474 219 47 62 chr6 76085081 76085280 -73431757 - ORR1C1 LTR MaLR 0 378 181 1 1165 597 28 0 0 chr6 76085280 76085351 -73431686 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1165 1474 219 47 62 chr6 76085351 76085535 -73431502 - ORR1C1 LTR MaLR -198 180 2 1 1165 2204 254 182 22 chr6 76085535 76086193 -73430844 - Lx6 LINE L1 -963 6497 5742 1 1165 2202 306 54 10 chr6 76086203 76087005 -73430032 - Lx8 LINE L1 -307 7166 6330 1 1165 376 262 76 19 chr6 76087057 76087162 -73429875 - MER20 DNA MER1_type -82 137 27 1 1165 358 196 11 11 chr6 76087348 76087441 -73429596 + CT-rich Low_complexity Low_complexity 1 93 0 1 1165 3047 62 182 2 chr6 76088212 76088646 -73428391 + RLTR1B LTR ERV1 1 512 0 1 1165 1730 253 53 25 chr6 76088711 76089277 -73427760 - Lx2B LINE L1 -1 7057 6110 1 1165 584 219 67 67 chr6 76089882 76090136 -73426901 - Lx9 LINE L1 0 7644 7391 1 1165 246 287 100 18 chr6 76090744 76090854 -73426183 - MER44B DNA MER2_type -421 129 11 1 1165 25 0 0 0 chr6 76091908 76091933 -73425104 + AT_rich Low_complexity Low_complexity 1 25 0 1 1165 1016 313 84 20 chr6 76092183 76092633 -73424404 + RMER5 LTR ERV1 56 534 0 1 1165 259 354 32 113 chr6 76093377 76093562 -73423475 + B4 SINE B4 3 172 -120 1 1165 444 111 0 0 chr6 76093648 76093720 -73423317 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1165 3072 22 0 21 chr6 76093777 76094154 -73422883 - L1Md_F2 LINE L1 -2 6580 6212 1 1165 225 0 0 0 chr6 76094330 76094355 -73422682 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1165 252 173 19 0 chr6 76095109 76095161 -73421876 + GA-rich Low_complexity Low_complexity 3 55 0 1 1165 1357 270 37 20 chr6 76095576 76095931 -73421106 - MTD LTR MaLR -12 407 47 1 1165 243 0 0 0 chr6 76095949 76095976 -73421061 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 1 1165 256 270 14 0 chr6 76096012 76096086 -73420951 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 1 1165 510 91 0 0 chr6 76096322 76096399 -73420638 + (T)n Simple_repeat Simple_repeat 1 77 0 1 1165 1076 65 0 0 chr6 76096399 76096537 -73420500 - B1_Mm SINE Alu 0 147 10 1 1165 486 180 8 98 chr6 76096434 76096557 -73420480 - MT2B LTR ERVL -337 264 153 1 1165 2283 28 51 14 chr6 76099290 76099585 -73417452 - L1Md_F2 LINE L1 -19 6563 6258 1 1165 231 367 13 0 chr6 76100738 76100817 -73416220 - L2a LINE L2 0 3426 3347 1 1165 705 106 0 37 chr6 76101557 76101665 -73415372 - Lx3B LINE L1 -153 6820 6717 1 1165 246 372 37 44 chr6 76102212 76102347 -73414690 + RSINE1 SINE B4 3 136 -29 1 1165 201 154 0 0 chr6 76102374 76102413 -73414624 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1 1165 1814 172 52 59 chr6 76102896 76103321 -73413716 + BGLII_Mus LTR ERVK 1 422 0 1 1165 267 31 0 0 chr6 76103334 76103366 -73413671 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 1 1165 600 11 11 11 chr6 76103368 76103459 -73413578 - L1Md_F2 LINE L1 -19 6563 6473 1 1165 1032 272 96 13 chr6 76104104 76104406 -73412631 - MTD LTR MaLR -90 329 3 1 1165 813 328 37 46 chr6 76104449 76104775 -73412262 - MTE2a LTR MaLR 0 379 57 1 1165 26 74 0 0 chr6 76104876 76104930 -73412107 + AT_rich Low_complexity Low_complexity 1 54 0 1 1165 309 281 102 0 chr6 76105138 76105266 -73411771 + MER58C DNA MER1_type 60 200 -15 1 1165 345 47 0 0 chr6 76105531 76105574 -73411463 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1165 234 0 0 0 chr6 76105574 76105599 -73411438 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1165 300 53 0 0 chr6 76105599 76105636 -73411401 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1165 415 108 0 0 chr6 76105920 76105994 -73411043 - L1_Mus3 LINE L1 -2 6636 6563 1 1165 3236 78 0 5 chr6 76106001 76106426 -73410611 - L1Md_F2 LINE L1 -10 6572 6150 1 1165 5498 39 0 0 chr6 76106462 76107122 -73409915 - L1Md_T LINE L1 0 6582 5923 1 1165 180 0 0 0 chr6 76107399 76107419 -73409618 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1165 234 192 0 0 chr6 76107816 76107868 -73409169 + (CATA)n Simple_repeat Simple_repeat 1 52 0 1 1165 183 24 93 47 chr6 76108359 76108402 -73408635 + T-rich Low_complexity Low_complexity 2 46 0 1 1165 271 277 69 10 chr6 76109244 76109346 -73407691 - ORR1E LTR MaLR -251 108 1 1 1165 254 242 16 0 chr6 76109346 76109394 -73407643 - MTE-int LTR MaLR -53 1527 1479 1 1165 1215 282 79 111 chr6 76109438 76109926 -73407111 - RMER13A LTR ERVK -35 825 377 1 1165 387 0 0 0 chr6 76109926 76109969 -73407068 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1165 1215 282 79 111 chr6 76109969 76110162 -73406875 - RMER13A LTR ERVK -484 376 168 1 1165 4786 81 10 0 chr6 76110162 76110841 -73406196 + MusHAL1 LINE L1 1626 2311 -401 1 1165 607 330 138 35 chr6 76110841 76111325 -73405712 - MTE-int LTR MaLR -164 1416 883 1 1165 21 57 0 0 chr6 76111898 76111933 -73405104 + AT_rich Low_complexity Low_complexity 1 35 0 1 1165 24 53 0 0 chr6 76112082 76112120 -73404917 + AT_rich Low_complexity Low_complexity 1 38 0 1 1165 1806 194 46 0 chr6 76112313 76112664 -73404373 + Lx4A LINE L1 6691 7057 -1 1 1165 307 338 12 0 chr6 76113130 76113210 -73403827 - PB1D10 SINE Alu -15 102 22 1 1165 324 309 120 40 chr6 76113872 76114415 -73402622 - L1MEc LINE L1 -5268 1132 547 1 1165 25 0 0 0 chr6 76114724 76114749 -73402288 + AT_rich Low_complexity Low_complexity 1 25 0 2 1165 27 0 0 0 chr6 76116453 76116480 -73400557 + AT_rich Low_complexity Low_complexity 1 27 0 2 1165 236 353 0 101 chr6 76116532 76116661 -73400376 - RSINE1 SINE B4 0 165 50 2 1165 3293 121 40 0 chr6 76117114 76117620 -73399417 + Lx3_Mus LINE L1 6484 7009 0 2 1165 599 0 14 0 chr6 76117854 76117925 -73399112 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 2 1165 405 58 0 0 chr6 76119792 76119844 -73397193 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1165 216 220 20 0 chr6 76119926 76119976 -73397061 - B3A SINE B2 -147 51 1 2 1165 6908 57 4 4 chr6 76120047 76120933 -73396104 - L1Md_F2 LINE L1 -3 6579 5711 2 1165 210 91 0 0 chr6 76121064 76121097 -73395940 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 2 1165 961 297 61 19 chr6 76121363 76121675 -73395362 - MTD LTR MaLR -85 334 10 2 1165 807 314 100 28 chr6 76121695 76122157 -73394880 - Lx8 LINE L1 -377 7096 6602 2 1165 412 328 51 27 chr6 76122183 76122391 -73394646 - B3 SINE B2 0 216 7 2 1165 591 285 25 20 chr6 76122410 76122607 -73394430 - Lx8 LINE L1 -916 6557 6360 2 1165 803 308 35 122 chr6 76122612 76123007 -73394030 - MTE2a LTR MaLR -8 371 11 2 1165 866 42 0 0 chr6 76123528 76123646 -73393391 - L1Md_A LINE L1 0 6582 6465 2 1165 3157 45 0 0 chr6 76123646 76124022 -73393015 + L1Md_T LINE L1 6076 6451 -131 2 1165 374 230 21 35 chr6 76124185 76124303 -73392734 - Lx9 LINE L1 -7 7637 7518 2 1165 197 65 0 31 chr6 76124303 76124335 -73392702 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 2 1165 1546 279 111 10 chr6 76124335 76124824 -73392213 - Lx9 LINE L1 -127 7517 6982 2 1165 454 369 14 0 chr6 76125517 76125658 -73391379 + RSINE1 SINE B4 2 144 -21 2 1165 207 88 0 0 chr6 76125679 76125713 -73391324 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1165 2330 189 181 48 chr6 76126569 76127189 -73389848 - RMER19B LTR ERVK -29 873 172 2 1165 1379 332 13 0 chr6 76127580 76128044 -73388993 + MuRRS4-int LTR ERV1 3557 4026 -1037 2 1165 2235 134 70 186 chr6 76128586 76129189 -73387848 - RMER16 LTR ERVK 0 533 1 2 1165 1599 129 55 0 chr6 76129303 76129558 -73387479 + Lx2 LINE L1 6637 6905 -92 2 1165 854 314 99 86 chr6 76129575 76130404 -73386633 - RodERV21-int LTR ERV1 -1435 3556 2717 2 1165 258 277 33 16 chr6 76130461 76130582 -73386455 - RodERV21-int LTR ERV1 -3383 3708 3586 2 1165 777 294 38 65 chr6 76130653 76131020 -73386017 - RodERV21-int LTR ERV1 -2224 2767 2411 2 1165 401 153 70 35 chr6 76131308 76131434 -73385603 + L1_Mus3 LINE L1 6389 6523 -131 2 1165 648 0 0 0 chr6 76131742 76131814 -73385223 + (CAG)n Simple_repeat Simple_repeat 1 72 0 2 1165 563 40 14 0 chr6 76132220 76132294 -73384743 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 1165 1515 234 26 26 chr6 76132459 76133146 -73383891 - L1_Mur1 LINE L1 -2430 1482 802 2 1165 394 292 139 14 chr6 76133792 76134007 -73383030 - L1MA6 LINE L1 -6 6294 6053 2 1165 450 314 56 73 chr6 76135666 76135968 -73381069 + ORR1E LTR MaLR 56 352 -7 2 1165 608 258 7 43 chr6 76136698 76136859 -73380178 + B3A SINE B2 36 186 -30 2 1165 4283 123 16 16 chr6 76136872 76137599 -73379438 + MusHAL1 LINE L1 1108 1834 -878 2 1165 8093 173 67 47 chr6 76137592 76140623 -73376414 + Lx2B LINE L1 3907 6996 -4 2 1165 759 260 101 85 chr6 76141239 76141611 -73375426 - MTE2b LTR MaLR 0 374 11 2 1165 4754 113 113 14 chr6 76141917 76142742 -73374295 + RMER17A2 LTR ERVK 1 906 0 2 1165 312 273 23 8 chr6 76142756 76142889 -73374148 + (CAGAGA)n Simple_repeat Simple_repeat 4 138 0 2 1165 230 286 71 0 chr6 76143009 76143079 -73373958 - ID4_ SINE ID -6 77 3 2 1165 614 307 37 28 chr6 76143366 76143584 -73373453 + B4 SINE B4 65 284 -8 2 1165 425 249 66 6 chr6 76143768 76143934 -73373103 + L1M3 LINE L1 3899 4074 -2069 2 1165 316 323 25 25 chr6 76144405 76144602 -73372435 + L1M3 LINE L1 4124 4320 -1823 2 1165 279 0 0 0 chr6 76144810 76144841 -73372196 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1165 207 228 0 17 chr6 76144884 76144942 -73372095 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 1165 333 227 27 47 chr6 76144945 76144984 -73372053 + Lx9 LINE L1 7477 7513 -131 2 1165 2708 123 2 12 chr6 76144984 76145395 -73371642 - MTB_Mm LTR MaLR 0 407 1 2 1165 333 227 27 47 chr6 76145395 76145503 -73371534 + Lx9 LINE L1 7514 7620 -24 2 1165 458 253 88 21 chr6 76145540 76145811 -73371226 + L1M3 LINE L1 4758 5063 -1080 2 1165 321 283 53 33 chr6 76145885 76146035 -73371002 + L1M3 LINE L1 5174 5326 -817 2 1165 841 289 5 0 chr6 76146369 76146563 -73370474 + B3 SINE B2 1 195 -21 2 1165 5504 127 52 27 chr6 76146563 76148140 -73368897 - Lx3B LINE L1 -373 6600 4984 2 1165 321 26 0 0 chr6 76148543 76148581 -73368456 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1165 1085 76 11 23 chr6 76149245 76149421 -73367616 + (GGAGAA)n Simple_repeat Simple_repeat 5 178 0 2 1165 312 125 56 0 chr6 76149427 76149499 -73367538 + GA-rich Low_complexity Low_complexity 3 78 0 2 1165 661 291 64 0 chr6 76149682 76149885 -73367152 + Lx5 LINE L1 6832 7047 -3 2 1165 755 204 0 0 chr6 76150139 76150271 -73366766 - U1 snRNA snRNA -28 137 6 2 1165 192 342 25 0 chr6 76150346 76150425 -73366612 - MIRc SINE MIR -71 197 117 2 1165 25 0 0 0 chr6 76150992 76151017 -73366020 + AT_rich Low_complexity Low_complexity 1 25 0 2 1165 1728 244 19 38 chr6 76151738 76152210 -73364827 + RLTR20B3 LTR ERVK 71 533 -44 2 1165 567 0 0 0 chr6 76152245 76152308 -73364729 + (TC)n Simple_repeat Simple_repeat 2 64 0 2 1165 279 0 0 0 chr6 76152308 76152338 -73364699 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 145 2128 232 64 16 chr6 76152387 76152904 -73364133 - Lx2B LINE L1 -251 6749 6208 2 1166 2101 309 37 46 chr6 76152934 76153855 -73363182 - Lx8 LINE L1 -142 7331 6419 2 1166 183 42 0 0 chr6 76154525 76154549 -73362488 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1166 468 302 101 42 chr6 76154890 76155236 -73361801 + L1_Rod LINE L1 2056 2426 -3421 2 1166 1235 18 36 0 chr6 76155236 76155457 -73361580 + (TCTA)n Simple_repeat Simple_repeat 1 229 0 2 1166 468 302 101 42 chr6 76155457 76155486 -73361551 + L1_Rod LINE L1 2427 2453 -3394 2 1166 182 37 37 0 chr6 76155515 76155542 -73361495 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1166 295 308 47 28 chr6 76155631 76155845 -73361192 + L1M2 LINE L1 2647 2864 -3279 2 1166 376 336 73 58 chr6 76155897 76156527 -73360510 + L1M2 LINE L1 2937 3638 -2505 2 1166 4127 156 42 1 chr6 76156917 76157388 -73359649 - Lx4A LINE L1 0 7058 6571 2 1166 315 0 0 0 chr6 76157388 76157423 -73359614 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1166 4127 156 42 1 chr6 76157423 76157681 -73359356 - Lx4A LINE L1 -488 6570 6301 2 1166 758 127 8 0 chr6 76157698 76157824 -73359213 + (TAGA)n Simple_repeat Simple_repeat 1 127 0 2 1166 279 297 119 71 chr6 76157861 76158071 -73358966 + B4A SINE B4 20 239 -53 2 1166 21 0 0 0 chr6 76158554 76158575 -73358462 + AT_rich Low_complexity Low_complexity 1 21 0 2 1166 313 296 78 22 chr6 76158729 76158914 -73358123 - L1MC LINE L1 -2761 3385 3191 2 1166 1562 48 0 0 chr6 76159030 76159218 -73357819 - B2_Mm1t SINE B2 -4 189 2 2 1166 31 58 0 0 chr6 76159538 76159590 -73357447 + AT_rich Low_complexity Low_complexity 1 52 0 2 1166 813 332 86 30 chr6 76160195 76160533 -73356504 + MTD LTR MaLR 1 357 -62 2 1166 1200 41 7 0 chr6 76160605 76160751 -73356286 - B1_Mus1 SINE Alu -1 147 1 2 1166 542 272 48 0 chr6 76161784 76161909 -73355128 + B1_Mur1 SINE Alu 8 138 -11 2 1166 207 0 0 0 chr6 76161957 76161980 -73355057 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 2 1166 1486 281 36 19 chr6 76161981 76162448 -73354589 - Lx5 LINE L1 -15 7035 6536 2 1166 3654 175 50 74 chr6 76162449 76162572 -73354465 - L1_Mur2 LINE L1 -2968 2909 2801 2 1166 5317 10 0 0 chr6 76162572 76163167 -73353870 - L1Md_A LINE L1 0 6582 5988 2 1166 3654 175 50 74 chr6 76163167 76164060 -73352977 - L1_Mur2 LINE L1 -3077 2800 1917 2 1166 427 173 9 63 chr6 76164070 76164181 -73352856 - L1_Mur2 LINE L1 -5791 1295 1191 2 1166 413 141 0 25 chr6 76164181 76164261 -73352776 - L1Md_F2 LINE L1 -2 6580 6503 2 1166 26674 89 2 17 chr6 76164261 76169336 -73347701 - L1Md_F LINE L1 -412 5471 476 2 1166 4721 141 77 0 chr6 76169337 76170141 -73346896 - L1Md_F LINE L1 -4640 1243 378 2 1166 1081 181 13 18 chr6 76170144 76170369 -73346668 - L1_Mur2 LINE L1 -5962 1124 901 2 1166 623 236 28 0 chr6 76170596 76170740 -73346297 - B1_Mus1 SINE Alu 0 148 1 2 1166 33 25 0 0 chr6 76170743 76170783 -73346254 + AT_rich Low_complexity Low_complexity 1 40 0 2 1166 952 87 58 0 chr6 76171526 76171664 -73345373 + B1_Mus2 SINE Alu 2 147 0 2 1166 2971 167 53 16 chr6 76172243 76172982 -73344055 + RLTR13D2 LTR ERVK 45 1023 0 2 1166 426 361 24 1 chr6 76173142 76173306 -73343731 + ID_B1 SINE B4 61 222 -2 2 1166 210 128 0 0 chr6 76173526 76173565 -73343472 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1166 3757 146 26 3 chr6 76173808 76174432 -73342605 + Lx2A1 LINE L1 6364 7001 -7 2 1166 932 268 0 0 chr6 76174568 76174773 -73342264 + Lx9 LINE L1 7073 7277 -367 2 1166 315 121 0 0 chr6 76175131 76175189 -73341848 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1166 300 312 26 35 chr6 76176517 76176633 -73340404 + B2_Mm2 SINE B2 4 118 -77 2 1166 468 0 0 0 chr6 76176646 76176698 -73340339 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1166 330 45 0 0 chr6 76176771 76176815 -73340222 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1166 326 164 0 18 chr6 76176816 76176872 -73340165 - HAL1-3A_ME LINE L1 -846 2012 1958 2 1166 4064 114 50 2 chr6 76177019 76177644 -73339393 + Lx3A LINE L1 6327 6981 0 2 1166 6103 131 55 3 chr6 76177655 76178711 -73338326 + Lx2 LINE L1 5532 6641 -356 2 1166 1322 115 10 0 chr6 76178713 76178922 -73338115 + Lx2 LINE L1 6775 6985 -12 2 1166 24 32 0 0 chr6 76178924 76178955 -73338082 + AT_rich Low_complexity Low_complexity 1 31 0 2 1166 21 36 0 0 chr6 76179432 76179460 -73337577 + AT_rich Low_complexity Low_complexity 1 28 0 2 1166 382 49 74 0 chr6 76179850 76179931 -73337106 + (CAAA)n Simple_repeat Simple_repeat 2 88 0 2 1166 240 356 20 0 chr6 76180147 76180248 -73336789 + MIRc SINE MIR 92 194 -74 2 1166 27000 9 0 0 chr6 76181636 76185438 -73331599 - L1Md_A LINE L1 0 6582 2782 2 1166 9013 11 0 0 chr6 76185435 76186479 -73330558 + L1_Mm LINE L1 2417 3460 -2423 3 1166 7205 77 14 22 chr6 76186861 76187998 -73329039 + L1_Mus2 LINE L1 5436 6566 0 3 1166 416 323 52 72 chr6 76189022 76189312 -73327725 - B4A SINE B4 -4 288 5 3 1166 803 184 89 0 chr6 76189349 76189517 -73327520 + B2_Mm2 SINE B2 3 185 -10 3 1166 385 306 152 24 chr6 76190124 76190288 -73326749 + ID_B1 SINE B4 1 185 -39 3 1166 735 256 24 80 chr6 76190290 76190502 -73326535 + RMER15 LTR ERVL 3 202 -373 3 1166 1290 248 109 8 chr6 76190571 76190929 -73326108 + RMER15 LTR ERVL 180 573 -2 3 1166 29 0 0 0 chr6 76191056 76191085 -73325952 + AT_rich Low_complexity Low_complexity 1 29 0 3 1166 468 259 37 0 chr6 76191259 76191367 -73325670 + PB1D9 SINE Alu 1 112 -8 3 1166 4125 111 18 35 chr6 76191613 76192276 -73324761 - Lx2A1 LINE L1 -595 6413 5762 3 1166 7460 86 19 10 chr6 76192269 76193455 -73323582 + L1_Mus1 LINE L1 296 1496 -4387 3 1166 5561 84 11 11 chr6 76193452 76194662 -73322375 + L1_Mus1 LINE L1 5142 6359 -208 3 1166 1146 288 40 52 chr6 76194660 76195063 -73321974 + Lx6 LINE L1 6993 7390 -70 3 1166 495 0 0 0 chr6 76195076 76195131 -73321906 + (TAA)n Simple_repeat Simple_repeat 3 57 0 3 1166 23 0 0 0 chr6 76195286 76195309 -73321728 + AT_rich Low_complexity Low_complexity 1 23 0 3 1166 772 175 12 0 chr6 76196183 76196343 -73320694 + CT-rich Low_complexity Low_complexity 1 162 0 3 1166 5546 126 7 11 chr6 76196343 76197220 -73319817 - Lx3A LINE L1 0 6981 6109 3 1166 281 276 40 20 chr6 76197260 76197360 -73319677 - L1M4c LINE L1 -1918 4461 4360 3 1166 429 346 90 33 chr6 76197417 76197784 -73319253 - L1M4c LINE L1 -5991 393 6 3 1166 7440 69 1 5 chr6 76198272 76199245 -73317792 - L1Md_F2 LINE L1 -6 6576 5608 3 1166 524 168 49 10 chr6 76199711 76199813 -73317224 + RLTR20B3 LTR ERVK 472 577 0 3 1166 353 321 0 18 chr6 76199813 76199925 -73317112 - B3 SINE B2 -96 120 11 3 1166 371 276 73 66 chr6 76200573 76200709 -73316328 + B1_Mur2 SINE Alu 13 149 0 3 1166 244 315 84 30 chr6 76200892 76201023 -73316014 - ID_B1 SINE B4 -1 223 86 3 1166 3260 70 5 5 chr6 76201255 76201685 -73315352 - L1_Mus1 LINE L1 -8 6559 6130 3 1166 2613 84 64 8 chr6 76201685 76202058 -73314979 + L1Md_F2 LINE L1 5728 6121 -461 3 1166 706 326 50 63 chr6 76202285 76202648 -73314389 + MTD LTR MaLR 18 375 -44 3 1166 2580 99 18 3 chr6 76202656 76202874 -73314163 - L1_Mus2 LINE L1 0 6566 6348 3 1166 189 0 0 0 chr6 76202874 76202895 -73314142 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 3 1166 2580 99 18 3 chr6 76202895 76203061 -73313976 - L1_Mus2 LINE L1 -219 6347 6176 3 1166 4634 69 12 0 chr6 76203061 76203959 -73313078 + L1_Mus2 LINE L1 5260 6167 -399 3 1166 759 338 88 19 chr6 76204701 76205018 -73312019 - MTE2b LTR MaLR -40 339 1 3 1166 221 0 0 33 chr6 76205029 76205059 -73311978 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1166 2433 131 27 15 chr6 76205319 76205721 -73311316 + MTB_Mm LTR MaLR 1 407 0 3 1166 285 155 0 0 chr6 76205915 76205973 -73311064 + CT-rich Low_complexity Low_complexity 1 58 0 3 1166 213 242 16 0 chr6 76205973 76206035 -73311002 + (CATA)n Simple_repeat Simple_repeat 4 66 0 3 1166 243 323 24 0 chr6 76206066 76206190 -73310847 + L1MC LINE L1 5774 5900 -433 3 1166 628 282 7 0 chr6 76206265 76206414 -73310623 + B3 SINE B2 8 157 -59 3 1166 466 259 0 27 chr6 76206446 76206557 -73310480 - Lx2B LINE L1 -146 6854 6747 3 1166 11579 184 55 13 chr6 76206609 76208003 -73309034 - L1_Mur2 LINE L1 -1299 4578 3126 3 1166 240 35 0 0 chr6 76208003 76208032 -73309005 + (CAAT)n Simple_repeat Simple_repeat 3 31 0 3 1166 11579 184 55 13 chr6 76208032 76209221 -73307816 - L1_Mur2 LINE L1 -2752 3125 1887 3 1166 613 249 56 44 chr6 76209245 76209497 -73307540 - L1_Mur2 LINE L1 -4168 1718 1464 3 1166 360 368 60 0 chr6 76209542 76209659 -73307378 + RSINE1 SINE B4 6 129 -36 3 1166 24 32 0 0 chr6 76209744 76209775 -73307262 + AT_rich Low_complexity Low_complexity 1 31 0 3 1166 219 202 26 60 chr6 76209799 76209915 -73307122 + (TTATA)n Simple_repeat Simple_repeat 4 115 0 3 1166 543 359 0 92 chr6 76209967 76210185 -73306852 - B3A SINE B2 0 198 1 3 1166 380 262 131 36 chr6 76210544 76210766 -73306271 - L1M5 LINE L1 -1751 4395 4153 3 1166 1673 76 8 8 chr6 76211046 76211284 -73305753 + L1_Mus2 LINE L1 6329 6566 0 3 1166 414 0 0 0 chr6 76211979 76212025 -73305012 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1166 300 70 0 0 chr6 76212026 76212069 -73304968 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1166 352 331 127 30 chr6 76212070 76212204 -73304833 - B3A SINE B2 -48 150 4 3 1166 424 292 153 40 chr6 76212363 76212819 -73304218 - L1MA5 LINE L1 -396 5904 5397 3 1166 1638 200 113 0 chr6 76212820 76213155 -73303882 - ORR1C2 LTR MaLR -2 382 10 3 1166 301 221 92 55 chr6 76213233 76213396 -73303641 - L1MA5 LINE L1 -822 5321 5153 3 1166 1144 342 51 46 chr6 76213565 76214140 -73302897 - L1_Mur3 LINE L1 -965 4915 4365 3 1166 234 0 0 0 chr6 76214140 76214166 -73302871 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1166 1144 342 51 46 chr6 76214166 76214281 -73302756 - L1_Mur3 LINE L1 -1516 4364 4245 3 1166 1987 82 4 0 chr6 76214281 76214551 -73302486 - L1_Mus2 LINE L1 -1 6565 6295 3 1166 1144 342 51 46 chr6 76214551 76215524 -73301513 - L1_Mur3 LINE L1 -1636 4244 3244 3 1166 312 295 18 6 chr6 76215656 76215778 -73301259 + MT2B LTR ERVL 1 126 -407 3 1166 653 248 30 57 chr6 76215792 76215992 -73301045 + MT2B LTR ERVL 195 428 -173 3 1166 270 0 0 0 chr6 76216004 76216034 -73301003 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1166 402 329 128 26 chr6 76216120 76217009 -73300028 - L1_Mur3 LINE L1 -3173 2707 1728 3 1166 280 288 14 0 chr6 76217887 76217960 -73299077 + RSINE1 SINE B4 48 121 -44 3 1166 189 262 44 67 chr6 76218737 76218827 -73298210 - L3b LINE CR1 -79 403 316 3 1166 207 341 44 82 chr6 76219778 76219960 -73297077 + MIR SINE MIR 86 260 -2 3 1166 558 318 32 32 chr6 76221460 76221681 -73295356 + Lx6 LINE L1 7137 7357 -103 3 1166 225 272 79 0 chr6 76221705 76221819 -73295218 - Lx6 LINE L1 -4 7456 7334 3 1166 864 309 32 40 chr6 76221796 76222143 -73294894 + Lx9 LINE L1 6945 7288 -356 3 1166 258 105 0 0 chr6 76224107 76224145 -73292892 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1166 266 301 0 14 chr6 76224333 76224407 -73292630 - B4A SINE B4 -209 83 11 3 1166 333 0 0 0 chr6 76224469 76224506 -73292531 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1166 186 43 0 0 chr6 76224973 76224996 -73292041 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1166 537 158 207 8 chr6 76226132 76226253 -73290784 - B1_Mus1 SINE Alu -1 147 3 3 1166 790 288 19 0 chr6 76226314 76226526 -73290511 + B3 SINE B2 1 216 0 3 1166 252 174 43 0 chr6 76227051 76227097 -73289940 - Lx5 LINE L1 -177 6873 6826 3 1166 295 259 9 53 chr6 76227063 76227177 -73289860 + Lx4A LINE L1 6948 7056 -2 3 1166 2947 262 26 23 chr6 76227281 76228751 -73288286 + Lx5 LINE L1 5670 7041 -9 3 1166 315 71 0 0 chr6 76228756 76228798 -73288239 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 1166 741 270 15 25 chr6 76229186 76229387 -73287650 + B3 SINE B2 1 199 -17 3 1166 693 266 0 151 chr6 76230053 76230305 -73286732 + B3A SINE B2 3 216 0 3 1166 21 0 0 0 chr6 76231440 76231461 -73285576 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 518 283 8 0 chr6 76231550 76231670 -73285367 - B3 SINE B2 -95 121 1 3 1166 444 82 0 0 chr6 76231797 76231858 -73285179 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 3 1166 237 33 0 0 chr6 76232481 76232511 -73284526 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 3 1166 1000 299 99 8 chr6 76232617 76233001 -73284036 - MTD LTR MaLR 0 419 1 3 1166 502 309 50 38 chr6 76233159 76233636 -73283401 + L1M2 LINE L1 4737 5219 -924 3 1166 303 28 0 0 chr6 76234195 76234231 -73282806 + (CAG)n Simple_repeat Simple_repeat 2 37 0 3 1166 2784 213 63 8 chr6 76235013 76235599 -73281438 - Lx5 LINE L1 -1 7049 6432 3 1166 1703 176 149 5 chr6 76235560 76235970 -73281067 + L1_Mur2 LINE L1 4488 4956 -921 3 1166 26 30 0 0 chr6 76236305 76236338 -73280699 + AT_rich Low_complexity Low_complexity 1 33 0 3 1166 1077 140 0 0 chr6 76237799 76237977 -73279060 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 3 1166 468 353 15 26 chr6 76238742 76238937 -73278100 - B3A SINE B2 -4 194 2 3 1166 687 257 38 11 chr6 76238960 76239145 -73277892 - B3 SINE B2 0 216 27 3 1166 1134 68 0 0 chr6 76239166 76239312 -73277725 - B1_Mus2 SINE Alu 0 147 2 3 1166 503 326 75 123 chr6 76239423 76239797 -73277240 - MTE2a LTR MaLR -9 370 15 3 1166 696 290 10 29 chr6 76239805 76240011 -73277026 + B3 SINE B2 1 202 -14 3 1166 274 250 60 0 chr6 76240222 76240306 -73276731 + L1MA5 LINE L1 6200 6288 -12 3 1166 301 349 32 64 chr6 76240391 76240547 -73276490 + RSINE1 SINE B4 3 153 -12 3 1166 1761 176 48 8 chr6 76240827 76241170 -73275867 - Lx4A LINE L1 -10 7048 6669 3 1166 1212 93 0 0 chr6 76241172 76241344 -73275693 + (TTC)n Simple_repeat Simple_repeat 2 173 0 3 1166 324 0 0 0 chr6 76241347 76241383 -73275654 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3 1166 813 48 0 0 chr6 76241385 76241490 -73275547 - B1_Mm SINE Alu -6 141 37 3 1166 2428 180 111 16 chr6 76241491 76241988 -73275049 - Lx4A LINE L1 -395 6663 6120 3 1166 3026 108 53 14 chr6 76241986 76242495 -73274542 + L1_Mur2 LINE L1 4768 5296 -581 3 1166 303 311 1 1 chr6 76242504 76242584 -73274453 - ORR1E LTR MaLR -303 81 2 3 1166 668 246 87 29 chr6 76243830 76244002 -73273035 + B3 SINE B2 34 215 -1 3 1166 1333 290 35 8 chr6 76244675 76245071 -73271966 - MTD LTR MaLR -12 407 1 3 1166 22 0 0 0 chr6 76245556 76245578 -73271459 + AT_rich Low_complexity Low_complexity 1 22 0 3 1166 554 345 65 42 chr6 76248805 76249065 -73267972 - B4 SINE B4 -22 270 5 3 1166 339 257 0 0 chr6 76249328 76249429 -73267608 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 3 1166 22 35 0 0 chr6 76249541 76249570 -73267467 + AT_rich Low_complexity Low_complexity 1 29 0 3 1166 363 339 0 82 chr6 76250625 76250747 -73266290 + B3A SINE B2 87 198 0 4 1166 290 375 29 14 chr6 76251272 76251410 -73265627 - B4A SINE B4 -149 143 4 4 1166 482 253 0 0 chr6 76251437 76251528 -73265509 - B1_Mur1 SINE Alu -13 136 46 4 1166 369 163 11 23 chr6 76251594 76251682 -73265355 - L1_Mur3 LINE L1 -6530 1182 1096 4 1166 3522 250 60 17 chr6 76251879 76253699 -73263338 + L1_Mur3 LINE L1 253 2156 -3724 4 1166 958 275 8 8 chr6 76253693 76253942 -73263095 + Lx7 LINE L1 6187 6435 -1261 4 1166 227 302 80 72 chr6 76254093 76254218 -73262819 - MLT1H-int LTR MaLR -887 522 397 4 1166 240 21 61 41 chr6 76254862 76254911 -73262126 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1166 352 383 7 0 chr6 76254941 76255082 -73261955 + MTE2b LTR MaLR 1 142 -237 4 1166 22 0 0 0 chr6 76255162 76255184 -73261853 + AT_rich Low_complexity Low_complexity 1 22 0 4 1166 334 275 23 70 chr6 76255199 76255328 -73261709 + MT2A LTR ERVL 242 364 -169 4 1166 24 0 0 0 chr6 76255968 76255992 -73261045 + AT_rich Low_complexity Low_complexity 1 24 0 4 1166 23025 112 5 16 chr6 76256366 76256901 -73260136 + L1Md_F2 LINE L1 1732 2265 -3618 4 1166 1099 182 28 51 chr6 76256901 76257156 -73259881 - RLTRETN_Mm LTR ERVK 0 322 74 4 1166 23025 112 5 16 chr6 76257156 76260477 -73256560 + L1Md_F2 LINE L1 2266 5584 -299 4 1166 7829 61 0 5 chr6 76260479 76261480 -73255557 + L1Md_F2 LINE L1 5587 6582 0 4 1166 205 300 0 36 chr6 76261642 76261725 -73255312 + (TATG)n Simple_repeat Simple_repeat 4 83 0 4 1166 205 360 90 55 chr6 76261797 76261997 -73255040 + MIR SINE MIR 19 225 -37 4 1166 22 0 0 0 chr6 76262723 76262745 -73254292 + AT_rich Low_complexity Low_complexity 1 22 0 4 1166 701 229 72 62 chr6 76262887 76263082 -73253955 + B3A SINE B2 2 198 0 4 1166 189 0 0 0 chr6 76263226 76263247 -73253790 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1166 453 36 0 0 chr6 76263260 76263315 -73253722 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1166 241 298 103 25 chr6 76263367 76263570 -73253467 + L1MEf LINE L1 1324 1542 -4658 4 1166 915 239 5 10 chr6 76263887 76264090 -73252947 + MTD LTR MaLR 18 219 -200 4 1166 683 157 8 16 chr6 76264723 76264852 -73252185 + Lx3A LINE L1 6745 6872 -109 4 1166 385 321 44 18 chr6 76265383 76265497 -73251540 - RSINE1 SINE B4 -45 120 4 4 1166 1116 65 0 0 chr6 76266467 76266606 -73250431 + B1_Mm SINE Alu 2 140 -7 4 1166 978 76 0 0 chr6 76266608 76266740 -73250297 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 4 1166 423 0 0 0 chr6 76266757 76266804 -73250233 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1166 824 270 30 0 chr6 76267476 76267676 -73249361 - B3 SINE B2 -8 208 3 4 1166 676 261 162 3 chr6 76267877 76268185 -73248852 - L1_Rod LINE L1 -6349 823 467 4 1166 271 311 125 26 chr6 76269307 76269459 -73247578 + MER5A DNA MER1_type 1 167 -22 4 1166 12482 107 4 16 chr6 76269478 76271920 -73245117 - L1Md_A LINE L1 -2844 3039 631 4 1166 933 137 0 0 chr6 76271914 76272060 -73244977 + L1_Mm LINE L1 4858 5003 -880 4 1166 1293 122 4 106 chr6 76272060 76272316 -73244721 + L1Md_F2 LINE L1 6336 6565 -17 4 1166 204 40 0 0 chr6 76272320 76272345 -73244692 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 4 1166 576 247 0 31 chr6 76272345 76272362 -73244675 + L1_Mur1 LINE L1 5007 5022 -864 4 1166 463 231 34 20 chr6 76272360 76272506 -73244531 + L1MB3 LINE L1 6028 6175 -8 4 1166 4071 104 12 0 chr6 76272538 76273124 -73243913 + L1Md_F2 LINE L1 4994 5586 -297 4 1166 7139 92 2 6 chr6 76273124 76274124 -73242913 + L1Md_F2 LINE L1 5587 6582 0 4 1166 23 54 0 0 chr6 76274686 76274723 -73242314 + AT_rich Low_complexity Low_complexity 1 37 0 4 1166 231 287 109 0 chr6 76274730 76274831 -73242206 + Tigger7 DNA MER2_type 2268 2379 -112 4 1166 369 0 0 0 chr6 76274855 76274896 -73242141 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1166 561 131 0 0 chr6 76275153 76275260 -73241777 + (TTGG)n Simple_repeat Simple_repeat 1 107 0 4 1166 218 472 0 12 chr6 76275260 76275421 -73241616 - RSINE1 SINE B4 -1 164 6 4 1166 234 0 0 0 chr6 76275431 76275457 -73241580 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1166 3221 86 0 0 chr6 76275570 76275999 -73241038 - L1_Mus1 LINE L1 0 6567 6139 4 1166 1991 96 0 0 chr6 76275999 76276270 -73240767 + L1_Mus1 LINE L1 5872 6142 -425 4 1166 572 276 8 0 chr6 76276667 76276790 -73240247 - B3 SINE B2 -54 162 39 4 1166 378 0 0 0 chr6 76276795 76276837 -73240200 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1166 361 355 103 34 chr6 76277205 76277497 -73239540 + MLT1A1 LTR MaLR 3 314 -94 4 1166 740 181 61 30 chr6 76277509 76277674 -73239363 - Lx7 LINE L1 0 7696 7527 4 1166 1120 51 0 0 chr6 76277688 76277826 -73239211 + B1_Mus1 SINE Alu 2 139 -9 4 1166 24 0 0 0 chr6 76277835 76277859 -73239178 + AT_rich Low_complexity Low_complexity 1 24 0 4 1166 759 164 47 21 chr6 76277859 76278052 -73238985 - Lx7 LINE L1 -140 7556 7359 4 1166 1723 236 40 22 chr6 76278131 76278587 -73238450 - Lx7 LINE L1 -354 7342 6879 4 1166 7724 177 32 11 chr6 76278583 76280167 -73236870 - L1_Mur3 LINE L1 -105 5775 4159 4 1166 364 312 58 7 chr6 76280423 76280562 -73236475 - Ricksha_c DNA MuDR -1548 500 355 4 1166 316 203 14 0 chr6 76280707 76280781 -73236256 - L1_Mur3 LINE L1 -1844 4036 3962 4 1166 3752 129 5 25 chr6 76280792 76281380 -73235657 + Lx LINE L1 6076 6651 -3 4 1166 420 214 0 10 chr6 76281469 76281568 -73235469 - L1_Mur3 LINE L1 -1905 3975 3878 4 1166 451 343 41 6 chr6 76282283 76282453 -73234584 + B3A SINE B2 2 177 -21 4 1166 21 0 0 0 chr6 76282475 76282496 -73234541 + AT_rich Low_complexity Low_complexity 1 21 0 4 1166 293 379 44 32 chr6 76282524 76282682 -73234355 + MLT1A LTR MaLR 186 345 -29 4 1166 1082 109 0 0 chr6 76282765 76282912 -73234125 - B1_Mus1 SINE Alu -1 147 1 4 1166 1279 96 37 5 chr6 76282916 76283104 -73233933 - B2_Mm2 SINE B2 0 195 2 4 145 6455 54 11 5 chr6 76283129 76283932 -73233105 - RLTR13C2 LTR ERVK 0 808 1 4 1167 368 295 39 32 chr6 76284084 76284238 -73232799 + MLT1A1 LTR MaLR 197 351 -57 4 1167 741 142 19 28 chr6 76284558 76284776 -73232261 + GA-rich Low_complexity Low_complexity 1 216 0 4 1167 1403 29 0 11 chr6 76284777 76284954 -73232083 + (GGGAGA)n Simple_repeat Simple_repeat 4 178 0 4 1167 434 342 55 71 chr6 76284997 76285252 -73231785 + MTD LTR MaLR 10 260 -161 4 1167 669 254 0 14 chr6 76285312 76285452 -73231585 + MTD LTR MaLR 268 405 -14 4 1167 333 241 116 58 chr6 76285610 76285852 -73231185 + L1MA4 LINE L1 5751 6006 -291 4 1167 24 0 0 0 chr6 76286064 76286088 -73230949 + AT_rich Low_complexity Low_complexity 1 24 0 4 1167 24 0 0 0 chr6 76286636 76286660 -73230377 + AT_rich Low_complexity Low_complexity 1 24 0 4 1167 675 289 49 21 chr6 76287062 76287451 -73229586 - L1MA6 LINE L1 -743 5400 5001 4 1167 777 289 110 30 chr6 76287463 76287927 -73229110 + L1MA6 LINE L1 5489 5989 -311 4 1167 28 61 0 0 chr6 76288179 76288228 -73228809 + AT_rich Low_complexity Low_complexity 1 49 0 4 1167 1254 155 4 34 chr6 76288264 76288498 -73228539 - Lx LINE L1 -6 6648 6422 4 1167 230 37 0 100 chr6 76288584 76288644 -73228393 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1167 1029 228 34 0 chr6 76288698 76288904 -73228133 - B3 SINE B2 0 216 4 4 1167 500 116 0 10 chr6 76289414 76289510 -73227527 + (GA)n Simple_repeat Simple_repeat 2 96 0 4 1167 886 287 162 9 chr6 76289574 76289894 -73227143 + ORR1D2 LTR MaLR 2 370 0 4 1167 21 57 0 0 chr6 76290220 76290255 -73226782 + AT_rich Low_complexity Low_complexity 1 35 0 4 1167 180 0 0 0 chr6 76291023 76291043 -73225994 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1167 249 292 101 109 chr6 76291185 76291304 -73225733 + B4 SINE B4 27 144 -148 4 1167 210 320 86 23 chr6 76291300 76291428 -73225609 + RSINE1 SINE B4 30 165 0 4 1167 407 359 23 0 chr6 76292112 76292240 -73224797 + RSINE1 SINE B4 7 137 -28 4 1167 22 0 0 0 chr6 76292249 76292271 -73224766 + AT_rich Low_complexity Low_complexity 1 22 0 4 1167 368 358 94 34 chr6 76292929 76293227 -73223810 - Lx9 LINE L1 -215 7429 7114 4 1167 354 335 12 30 chr6 76293234 76293400 -73223637 + Lx9 LINE L1 5805 5967 -1677 4 1167 4461 164 260 4 chr6 76293463 76294487 -73222550 - Lx5 LINE L1 -353 5524 4239 4 1167 4462 185 53 31 chr6 76294485 76295500 -73221537 + Lx5 LINE L1 5523 6569 -481 4 1167 4870 49 2 0 chr6 76295509 76296102 -73220935 - L1Md_F2 LINE L1 -139 6443 5850 4 1167 1948 250 7 16 chr6 76296110 76296541 -73220496 + Lx5 LINE L1 6577 7003 -47 4 1167 300 111 0 0 chr6 76296565 76296610 -73220427 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 4 1167 240 360 26 86 chr6 76296821 76297055 -73219982 + L2c LINE L2 3005 3224 -163 4 1167 429 20 0 0 chr6 76297602 76297652 -73219385 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1167 433 229 15 92 chr6 76297675 76297690 -73219347 - PB1D9 SINE Alu 0 120 112 4 1167 624 14 0 0 chr6 76297690 76297763 -73219274 + (GTTTG)n Simple_repeat Simple_repeat 2 74 0 4 1167 433 229 15 92 chr6 76297763 76297877 -73219160 - PB1D9 SINE Alu -9 111 1 4 1167 252 0 0 0 chr6 76297878 76297906 -73219131 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1167 22 35 0 0 chr6 76298007 76298036 -73219001 + AT_rich Low_complexity Low_complexity 1 29 0 4 1167 180 0 0 0 chr6 76299647 76299667 -73217370 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1167 271 0 0 49 chr6 76299667 76299708 -73217329 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 4 1167 414 57 0 0 chr6 76301215 76301268 -73215769 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1167 254 29 29 0 chr6 76302905 76302940 -73214097 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1167 544 213 23 38 chr6 76302959 76303091 -73213946 + ORR1D1 LTR MaLR 1 130 -244 4 1167 7448 91 32 20 chr6 76303104 76303644 -73213393 + Lx3A LINE L1 4749 5290 -596 4 1167 234 81 0 0 chr6 76303644 76303681 -73213356 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 4 1167 7938 112 54 10 chr6 76303681 76305278 -73211759 + Lx3A LINE L1 5291 6965 -16 4 1167 1139 107 0 11 chr6 76305279 76305458 -73211579 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 4 1167 585 28 0 0 chr6 76305494 76305565 -73211472 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1167 449 242 99 87 chr6 76305574 76305746 -73211291 + ORR1D1 LTR MaLR 196 382 -2 4 1167 820 325 44 65 chr6 76306020 76306405 -73210632 - MTE2a LTR MaLR -2 377 1 4 1167 336 266 115 61 chr6 76306816 76306964 -73210073 - RSINE1 SINE B4 -5 160 5 5 1167 253 339 123 76 chr6 76307684 76307895 -73209142 - MLT1G LTR MaLR -330 261 41 5 1167 21 0 0 0 chr6 76308027 76308048 -73208989 + AT_rich Low_complexity Low_complexity 1 21 0 5 1167 834 347 90 37 chr6 76308517 76308970 -73208067 + MT2A LTR ERVL 15 492 -41 5 1167 312 27 0 0 chr6 76308970 76309007 -73208030 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1167 834 347 90 37 chr6 76309007 76309044 -73207993 + MT2A LTR ERVL 493 530 -3 5 1167 795 325 71 11 chr6 76309315 76309679 -73207358 - MER90a LTR ERV1 -3 611 226 5 1167 444 299 77 24 chr6 76309684 76309931 -73207106 + L1MC LINE L1 5490 5749 -584 5 1167 329 336 84 77 chr6 76310029 76310316 -73206721 + B4 SINE B4 2 290 -2 5 1167 759 213 39 75 chr6 76310503 76310757 -73206280 - Lx7 LINE L1 -106 7590 7346 5 1167 702 24 0 0 chr6 76311781 76311865 -73205172 + (TGAG)n Simple_repeat Simple_repeat 4 87 0 5 1167 394 348 26 0 chr6 76312399 76312554 -73204483 + RSINE1 SINE B4 3 161 -4 5 1167 23 86 0 0 chr6 76312606 76312664 -73204373 + AT_rich Low_complexity Low_complexity 1 58 0 5 1167 22 35 0 0 chr6 76312779 76312808 -73204229 + AT_rich Low_complexity Low_complexity 1 29 0 5 1167 563 74 12 0 chr6 76313278 76313359 -73203678 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 5 1167 222 37 0 0 chr6 76313691 76313718 -73203319 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1167 1453 80 0 0 chr6 76313731 76313919 -73203118 + L1_Mus1 LINE L1 6380 6567 0 5 1167 1150 62 0 0 chr6 76313966 76314110 -73202927 + B1_Mus2 SINE Alu 1 144 -3 5 1167 211 235 29 0 chr6 76314431 76314499 -73202538 + (CAA)n Simple_repeat Simple_repeat 1 70 0 5 1167 333 337 0 0 chr6 76315128 76315226 -73201811 + B3A SINE B2 1 98 -100 5 1167 306 0 0 0 chr6 76315591 76315625 -73201412 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5 1167 444 207 0 11 chr6 76315637 76315725 -73201312 - B1_Mur2 SINE Alu -21 128 42 5 1167 274 0 0 159 chr6 76315728 76315866 -73201171 + (CTCTG)n Simple_repeat Simple_repeat 5 120 0 5 1167 292 271 0 33 chr6 76315867 76315928 -73201109 - PB1D9 SINE Alu -61 59 1 5 1167 693 240 157 5 chr6 76316012 76316209 -73200828 + MTC LTR MaLR 26 252 -169 5 1167 491 31 15 0 chr6 76316210 76316275 -73200762 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1167 599 255 55 60 chr6 76316430 76316647 -73200390 - B3 SINE B2 0 216 1 5 1167 277 344 35 77 chr6 76318270 76318440 -73198597 + RSINE1 SINE B4 3 165 0 5 1167 309 349 18 44 chr6 76318931 76319045 -73197992 + B3 SINE B2 2 112 -104 5 1167 342 0 0 0 chr6 76319068 76319106 -73197931 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1167 602 109 10 0 chr6 76319106 76319206 -73197831 + (CA)n Simple_repeat Simple_repeat 1 102 0 5 1167 380 173 73 12 chr6 76319269 76319351 -73197686 - MTD-int LTR MaLR -1171 87 1 5 1167 1366 268 47 12 chr6 76319351 76319756 -73197281 - MTD LTR MaLR 0 419 1 5 1167 304 288 11 101 chr6 76320178 76320267 -73196770 + B1_Mus1 SINE Alu 3 83 -65 5 1167 513 0 0 0 chr6 76320267 76320324 -73196713 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 5 1167 201 355 16 0 chr6 76320389 76320451 -73196586 - MER5B DNA MER1_type -2 176 114 5 1167 2916 100 38 16 chr6 76320859 76321305 -73195732 - Lx2 LINE L1 -11 6986 6531 5 1167 303 333 102 68 chr6 76321686 76321863 -73195174 + MER20 DNA MER1_type 12 194 -25 5 1167 1652 181 54 8 chr6 76322021 76322372 -73194665 - ORR1B2 LTR MaLR 0 367 1 5 1167 536 332 66 77 chr6 76323188 76323475 -73193562 + MT2A LTR ERVL 181 464 -69 5 1167 183 42 0 0 chr6 76323480 76323504 -73193533 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1167 300 27 0 0 chr6 76323504 76323541 -73193496 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1167 210 71 0 0 chr6 76323656 76323684 -73193353 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1167 183 42 0 0 chr6 76323721 76323745 -73193292 + (TC)n Simple_repeat Simple_repeat 2 25 0 5 1167 6208 93 81 10 chr6 76323754 76324726 -73192311 - Lx3_Mus LINE L1 0 7009 5969 5 1167 21 36 0 0 chr6 76326005 76326033 -73191004 + AT_rich Low_complexity Low_complexity 1 28 0 5 1167 439 296 16 31 chr6 76326379 76326508 -73190529 + MTEa LTR MaLR 204 330 -49 5 1167 409 162 27 0 chr6 76326574 76326648 -73190389 + MTD LTR MaLR 10 85 -334 5 1167 660 290 44 22 chr6 76326810 76327036 -73190001 + Lx9 LINE L1 7235 7465 -179 5 1167 234 0 0 0 chr6 76327039 76327065 -73189972 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1167 417 209 16 0 chr6 76327067 76327196 -73189841 + Lx9 LINE L1 7513 7643 -1 5 1167 204 40 0 0 chr6 76327263 76327288 -73189749 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1167 627 329 33 72 chr6 76327566 76327897 -73189140 + ORR1E LTR MaLR 33 350 -9 5 1167 589 301 38 57 chr6 76327906 76328325 -73188712 - L1MA4 LINE L1 -387 5913 5503 5 1167 209 213 0 0 chr6 76328467 76328514 -73188523 + (TAA)n Simple_repeat Simple_repeat 3 49 0 5 1167 504 0 0 0 chr6 76328583 76328639 -73188398 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1167 2037 251 23 7 chr6 76328767 76329411 -73187626 - Lx4B LINE L1 -1 6999 6326 5 1167 4595 177 34 24 chr6 76329406 76329586 -73187451 - L1_Mur1 LINE L1 -3308 2578 2404 5 1167 2913 61 200 9 chr6 76329586 76330016 -73187021 + RLTR1B LTR ERV1 1 512 0 5 1167 4595 177 34 24 chr6 76330016 76330857 -73186180 - L1_Mur1 LINE L1 -3483 2403 1546 5 1167 233 57 0 28 chr6 76331705 76331741 -73185296 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5 1167 184 333 175 0 chr6 76332602 76332716 -73184321 - L2a LINE L2 -254 3172 3039 5 1167 235 316 0 0 chr6 76332915 76332972 -73184065 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 5 1167 257 312 0 61 chr6 76333196 76333278 -73183759 + B3 SINE B2 73 149 -67 5 1167 354 115 0 0 chr6 76333280 76333341 -73183696 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1167 21 57 0 0 chr6 76333375 76333410 -73183627 + AT_rich Low_complexity Low_complexity 1 35 0 5 1167 336 189 9 36 chr6 76333668 76333778 -73183259 + (TATATG)n Simple_repeat Simple_repeat 2 108 0 5 1167 231 0 0 71 chr6 76333983 76334025 -73183012 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1167 387 306 123 14 chr6 76335589 76335735 -73181302 + RSINE1 SINE B4 4 165 0 5 1167 430 102 114 0 chr6 76336329 76336596 -73180441 + L1_Mus1 LINE L1 6467 6567 0 5 1167 380 349 60 60 chr6 76336743 76336978 -73180059 + MER77 LTR ERVL 227 461 -146 5 1167 716 243 7 7 chr6 76338278 76338431 -73178606 - MTD LTR MaLR -4 415 263 5 1167 371 300 117 51 chr6 76338534 76338748 -73178289 - MTD LTR MaLR -191 228 1 5 1167 1320 63 0 0 chr6 76339721 76339895 -73177142 + L1_Mus1 LINE L1 6392 6565 -2 5 1167 557 52 13 0 chr6 76340364 76340441 -73176596 + (TG)n Simple_repeat Simple_repeat 1 78 0 5 1167 339 25 0 0 chr6 76340617 76340657 -73176380 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 5 1167 24 32 0 0 chr6 76341565 76341596 -73175441 + AT_rich Low_complexity Low_complexity 1 31 0 5 1167 270 0 0 0 chr6 76341984 76342014 -73175023 + (GGA)n Simple_repeat Simple_repeat 1 30 0 5 1167 513 0 0 0 chr6 76342043 76342100 -73174937 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 5 1167 2094 277 42 99 chr6 76342100 76342273 -73174764 - RMER1C Other Other -144 1198 1032 5 1167 1082 90 0 0 chr6 76342273 76342418 -73174619 + B1_Mus2 SINE Alu 1 145 -2 5 1167 2094 277 42 99 chr6 76342418 76343062 -73173975 - RMER1C Other Other -311 1031 428 5 1167 201 39 0 0 chr6 76343064 76343090 -73173947 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1167 257 364 10 0 chr6 76343118 76343217 -73173820 - RMER1C Other Other -739 603 504 5 1167 524 236 31 18 chr6 76343354 76343542 -73173495 - Lx4B LINE L1 -17 7041 6874 5 1167 343 206 0 0 chr6 76343539 76343602 -73173435 + Lx5 LINE L1 6646 6708 -342 5 1167 223 327 38 4 chr6 76343673 76343770 -73173267 - MIRc SINE MIR -69 199 94 5 1167 24 53 0 0 chr6 76343811 76343849 -73173188 + AT_rich Low_complexity Low_complexity 1 38 0 5 1167 1090 85 0 0 chr6 76343851 76343992 -73173045 + B1_Mus2 SINE Alu 3 143 -4 5 1167 315 0 0 0 chr6 76343994 76344029 -73173008 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1167 970 116 7 0 chr6 76344290 76344437 -73172600 + L1VL4 LINE L1 238 385 -5917 5 1167 8013 90 35 27 chr6 76344428 76345194 -73171843 + MusHAL1 LINE L1 603 1381 -1331 5 1167 797 79 169 23 chr6 76345194 76345324 -73171713 + B1_Mur4 SINE Alu 2 150 0 5 1167 8013 90 35 27 chr6 76345324 76345856 -73171181 + MusHAL1 LINE L1 1382 1911 -801 5 1167 4314 179 12 10 chr6 76345848 76345930 -73171107 + Lx2 LINE L1 5076 5157 -726 5 1167 3200 48 2 10 chr6 76345930 76346327 -73170710 + MTA_Mm LTR MaLR 1 394 -2 5 1167 4314 155 28 5 chr6 76346327 76347364 -73169673 + Lx2 LINE L1 5158 6219 -778 5 1167 262 336 45 18 chr6 76347367 76347479 -73169558 - B4 SINE B4 -164 128 14 5 1167 214 364 121 38 chr6 76347782 76348096 -73168941 + L2 LINE L2 2710 3049 -370 5 1167 638 316 19 14 chr6 76348711 76348920 -73168117 + MTD LTR MaLR 1 210 -209 5 1167 3368 129 4 9 chr6 76348920 76349468 -73167569 - L1_Mm LINE L1 -338 5545 5001 5 1167 452 229 73 13 chr6 76349468 76349601 -73167436 - PB1D9 SINE Alu -4 145 4 5 1167 266 164 91 0 chr6 76349601 76349656 -73167381 + MTD LTR MaLR 360 419 0 5 1167 600 276 79 182 chr6 76349757 76350098 -73166939 + ORR1E LTR MaLR 54 359 0 5 1167 230 338 35 62 chr6 76351376 76351521 -73165516 + RSINE1 SINE B4 3 143 -22 5 1167 411 21 0 0 chr6 76351529 76351577 -73165460 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1167 26 0 0 0 chr6 76351603 76351629 -73165408 + AT_rich Low_complexity Low_complexity 1 26 0 5 1167 2574 64 6 36 chr6 76351850 76352206 -73164831 - IAPLTR4 LTR ERVK 0 345 1 5 1167 468 214 107 0 chr6 76352215 76352318 -73164719 + B1F2 SINE Alu 18 131 -18 5 1167 596 321 1 3 chr6 76352316 76352484 -73164553 - B3A SINE B2 -52 164 1 6 1167 1386 268 56 3 chr6 76352926 76353282 -73163755 + MTD LTR MaLR 45 419 0 6 1167 320 367 10 10 chr6 76353798 76353926 -73163111 + PB1D10 SINE Alu 2 129 -20 6 1167 615 248 239 47 chr6 76354019 76354362 -73162675 - Lx8 LINE L1 -349 7124 6716 6 1167 693 306 56 28 chr6 76354447 76354837 -73162200 + L1MC1 LINE L1 5433 5833 -500 6 1167 210 156 0 0 chr6 76355186 76355231 -73161806 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1167 198 193 0 0 chr6 76355230 76355287 -73161750 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 6 1167 336 275 170 27 chr6 76355760 76355984 -73161053 + L1MB7 LINE L1 5912 6167 -17 6 1167 1279 268 86 8 chr6 76356323 76356696 -73160341 - MTD LTR MaLR 0 419 18 6 1167 26 0 0 0 chr6 76356723 76356749 -73160288 + AT_rich Low_complexity Low_complexity 1 26 0 6 1167 272 271 35 0 chr6 76357101 76357186 -73159851 - L1M2 LINE L1 -716 5596 5509 6 1167 432 0 0 0 chr6 76357197 76357245 -73159792 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 6 1167 480 309 24 81 chr6 76358024 76358235 -73158802 - B3 SINE B2 0 216 18 6 1167 185 268 0 14 chr6 76359131 76359199 -73157838 - MIR SINE MIR -99 169 106 6 1167 1880 283 24 24 chr6 76359471 76359977 -73157060 - Lx5 LINE L1 -4 7046 6541 6 1167 1737 243 49 5 chr6 76359962 76360351 -73156686 + Lx5 LINE L1 6144 6549 -501 6 1167 279 0 0 0 chr6 76360782 76360813 -73156224 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1167 1151 76 0 0 chr6 76360813 76360958 -73156079 - B1_Mm SINE Alu 0 147 3 6 1167 506 310 31 21 chr6 76360961 76361152 -73155885 - Lx8 LINE L1 -490 6983 6791 6 1167 614 343 43 5 chr6 76361191 76361402 -73155635 - Lx8 LINE L1 -763 6710 6492 6 1167 21 0 0 0 chr6 76362231 76362252 -73154785 + AT_rich Low_complexity Low_complexity 1 21 0 6 1167 21 0 0 0 chr6 76362389 76362410 -73154627 + AT_rich Low_complexity Low_complexity 1 21 0 6 1167 454 366 35 6 chr6 76363002 76363175 -73153862 - Lx8 LINE L1 -165 7308 7131 6 1167 1019 310 94 86 chr6 76363372 76364001 -73153036 + RLTR26 LTR ERVK 1 634 -8 6 1167 838 336 53 32 chr6 76364336 76364677 -73152360 + ORR1E LTR MaLR 1 348 -11 6 1167 210 37 0 0 chr6 76364677 76364704 -73152333 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 1167 1171 308 30 16 chr6 76364880 76365246 -73151791 + Lx5 LINE L1 6605 6975 -75 6 1167 189 0 0 0 chr6 76365616 76365637 -73151400 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1167 1573 183 101 3 chr6 76365668 76365841 -73151196 + MTC LTR MaLR 1 196 -225 6 1167 201 74 0 0 chr6 76365841 76365868 -73151169 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1167 1573 183 101 3 chr6 76365868 76365990 -73151047 + MTC LTR MaLR 197 325 -96 6 1167 709 312 0 5 chr6 76366282 76366491 -73150546 - B3 SINE B2 -6 210 3 6 1167 216 86 0 0 chr6 76366810 76366845 -73150192 + (CCAA)n Simple_repeat Simple_repeat 1 35 0 6 1167 3492 151 42 2 chr6 76366966 76367542 -73149495 - MT2B LTR ERVL 0 601 3 6 1167 260 136 0 0 chr6 76367731 76367775 -73149262 + MTC LTR MaLR 336 379 0 6 1167 23 33 0 0 chr6 76368054 76368084 -73148953 + AT_rich Low_complexity Low_complexity 1 30 0 6 1167 471 353 6 39 chr6 76368260 76368416 -73148621 - RSINE1 SINE B4 -12 153 3 6 1167 694 291 0 32 chr6 76368473 76368661 -73148376 + B3A SINE B2 1 182 -16 6 1167 25 0 0 0 chr6 76369138 76369163 -73147874 + AT_rich Low_complexity Low_complexity 1 25 0 6 1167 422 302 125 54 chr6 76370032 76370256 -73146781 - MLT1I LTR MaLR -142 269 30 6 1167 287 310 68 34 chr6 76370364 76370481 -73146556 + ID_B1 SINE B4 100 220 -4 6 1167 180 0 0 0 chr6 76370516 76370536 -73146501 + (TAA)n Simple_repeat Simple_repeat 1 20 0 6 1167 344 389 74 6 chr6 76371858 76372021 -73145016 + B3A SINE B2 5 178 -20 6 1167 1155 15 0 0 chr6 76372024 76372157 -73144880 + (GGAGA)n Simple_repeat Simple_repeat 5 137 0 6 1167 1189 309 73 51 chr6 76372620 76373264 -73143773 + Lx8 LINE L1 6814 7471 -2 6 1167 270 0 0 0 chr6 76374194 76374224 -73142813 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1167 514 305 72 20 chr6 76375176 76375427 -73141610 - Lx8 LINE L1 -581 6892 6629 6 1167 417 342 52 43 chr6 76375924 76376251 -73140786 + L1ME1 LINE L1 2538 2867 -3279 6 1167 526 298 33 7 chr6 76376283 76376435 -73140602 + B3A SINE B2 16 171 -27 6 1167 468 0 0 0 chr6 76376437 76376489 -73140548 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1167 21 36 0 0 chr6 76376521 76376549 -73140488 + AT_rich Low_complexity Low_complexity 1 28 0 6 1167 417 39 0 0 chr6 76376854 76376905 -73140132 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1167 560 339 70 12 chr6 76376918 76377402 -73139635 + L1ME1 LINE L1 5439 5950 -229 6 1167 364 313 27 25 chr6 76377791 76377943 -73139094 + B3A SINE B2 45 188 -28 6 1167 34699 50 2 10 chr6 76378134 76381822 -73135215 + L1Md_F2 LINE L1 630 4284 -1599 6 1167 5965 38 6 0 chr6 76381822 76382538 -73134499 + L1Md_T LINE L1 5863 6582 0 6 1167 34699 46 2 0 chr6 76382538 76383838 -73133199 + L1Md_F2 LINE L1 4285 5585 -298 6 1167 7956 48 1 3 chr6 76383838 76384822 -73132215 + L1Md_F2 LINE L1 5587 6568 -14 6 1167 207 139 0 0 chr6 76385122 76385158 -73131879 + (TAA)n Simple_repeat Simple_repeat 2 37 0 6 1167 522 0 0 0 chr6 76386150 76386208 -73130829 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 1167 363 44 0 0 chr6 76386208 76386252 -73130785 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1167 948 287 25 18 chr6 76386293 76386573 -73130464 - B4A SINE B4 -10 282 1 6 1167 372 271 67 17 chr6 76387564 76387744 -73129293 - Lx6 LINE L1 -26 7434 7246 6 1167 717 291 20 5 chr6 76387728 76387928 -73129109 - Lx6 LINE L1 -140 7320 7118 6 1167 314 231 16 25 chr6 76388323 76388434 -73128603 + L1MA5 LINE L1 5760 5931 -369 6 1167 264 362 97 55 chr6 76388666 76388923 -73128114 - MLT1C LTR MaLR 0 467 200 6 1167 272 290 106 6 chr6 76388954 76389124 -73127913 - L1MA7 LINE L1 -3 6288 6102 6 1167 429 66 0 0 chr6 76389128 76389189 -73127848 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 1167 574 274 13 13 chr6 76389346 76389501 -73127536 - MLT1C LTR MaLR -298 169 15 6 1167 634 188 56 30 chr6 76390417 76390614 -73126423 + Lx9 LINE L1 7441 7642 -2 6 1167 525 228 44 105 chr6 76391626 76391807 -73125230 - B3A SINE B2 -6 189 20 6 1167 288 333 78 0 chr6 76391845 76391947 -73125090 + ID_B1 SINE B4 2 111 -113 6 1167 237 159 0 0 chr6 76392009 76392053 -73124984 + GA-rich Low_complexity Low_complexity 2 45 0 6 1167 31 44 0 0 chr6 76392078 76392123 -73124914 + AT_rich Low_complexity Low_complexity 1 45 0 6 1167 305 349 44 44 chr6 76392271 76392406 -73124631 + B3 SINE B2 80 214 -2 6 1167 233 98 24 0 chr6 76392422 76392463 -73124574 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 6 1167 223 222 15 31 chr6 76393487 76393617 -73123420 + GA-rich Low_complexity Low_complexity 6 133 0 6 1167 599 302 43 48 chr6 76393652 76393840 -73123197 + B4A SINE B4 100 286 -6 6 1167 22 35 0 0 chr6 76394575 76394604 -73122433 + AT_rich Low_complexity Low_complexity 1 29 0 6 1167 226 328 0 0 chr6 76395710 76395777 -73121260 + GA-rich Low_complexity Low_complexity 6 72 0 6 1167 1756 174 14 30 chr6 76396574 76396935 -73120102 - Lx4B LINE L1 -5 7053 6699 6 1167 444 299 26 73 chr6 76397200 76397391 -73119646 + B3A SINE B2 1 182 -16 6 1167 515 308 28 7 chr6 76397595 76397739 -73119298 + B3A SINE B2 5 151 -47 6 1167 315 0 0 0 chr6 76397776 76397811 -73119226 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1167 22 56 0 0 chr6 76397811 76397847 -73119190 + AT_rich Low_complexity Low_complexity 1 36 0 6 1167 367 329 50 25 chr6 76397864 76398023 -73119014 + LTR90A LTR LTR 805 967 -9 6 1167 2918 57 10 33 chr6 76398734 76399133 -73117904 - RLTR10 LTR ERVK 0 390 1 6 1167 819 21 0 0 chr6 76399235 76399332 -73117705 + (TG)n Simple_repeat Simple_repeat 1 97 0 6 1167 380 368 26 13 chr6 76399337 76399491 -73117546 - B3A SINE B2 -41 157 2 6 1167 522 342 31 24 chr6 76400513 76400899 -73116138 + MLT1E2 LTR MaLR 2 443 -184 6 1167 578 214 68 8 chr6 76400988 76401120 -73115917 - Lx8 LINE L1 -615 6858 6719 6 1167 202 97 0 31 chr6 76401343 76401375 -73115662 + (AGGGGG)n Simple_repeat Simple_repeat 2 32 0 6 1167 357 349 29 35 chr6 76401554 76401726 -73115311 + MLT1A LTR MaLR 173 343 -31 6 1167 690 304 53 24 chr6 76401939 76402185 -73114852 - MER2 DNA MER2_type -3 342 90 6 1167 439 352 75 15 chr6 76402697 76402962 -73114075 - RMER15 LTR ERVL -14 561 281 6 1167 240 266 38 115 chr6 76402942 76403099 -73113938 - RMER15 LTR ERVL -396 179 35 6 1167 258 174 0 0 chr6 76403186 76403232 -73113805 - ORR1C2 LTR MaLR -338 46 1 6 1167 449 316 19 19 chr6 76403652 76403793 -73113244 + RSINE1 SINE B4 5 145 -20 6 1167 435 38 0 0 chr6 76403793 76403846 -73113191 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1167 449 316 19 19 chr6 76403846 76403859 -73113178 + RSINE1 SINE B4 146 158 -7 6 1167 267 31 0 0 chr6 76405207 76405239 -73111798 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1167 258 106 0 0 chr6 76406014 76406061 -73110976 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 1167 7102 94 7 24 chr6 76406195 76407206 -73109831 + Lx LINE L1 5653 6646 -8 6 1167 297 0 0 0 chr6 76407311 76407344 -73109693 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1167 462 353 106 12 chr6 76407666 76408034 -73109003 - L1MCc LINE L1 -4851 1571 1172 6 1167 1055 230 177 16 chr6 76408508 76408702 -73108335 - ORR1D1 LTR MaLR 0 374 165 6 1167 270 0 0 0 chr6 76408702 76408732 -73108305 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1167 1055 230 177 16 chr6 76408732 76408859 -73108178 - ORR1D1 LTR MaLR -210 164 1 6 1167 32 0 0 0 chr6 76409112 76409144 -73107893 + AT_rich Low_complexity Low_complexity 1 32 0 6 1167 460 350 0 19 chr6 76409405 76409565 -73107472 + MTEb LTR MaLR 1 157 -222 6 1167 1073 90 0 0 chr6 76409578 76409723 -73107314 - B1_Mus1 SINE Alu 0 148 4 6 1167 319 342 25 99 chr6 76409746 76409989 -73107048 + MTEb LTR MaLR 149 373 -6 6 1167 658 279 0 72 chr6 76410447 76410613 -73106424 - B3A SINE B2 -41 157 4 6 1167 238 123 35 0 chr6 76412203 76412260 -73104777 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1167 343 257 0 0 chr6 76412500 76412574 -73104463 + MLT1I LTR MaLR 317 390 -21 7 1167 24 32 0 0 chr6 76413091 76413122 -73103915 + AT_rich Low_complexity Low_complexity 1 31 0 7 1167 603 304 23 17 chr6 76413411 76413588 -73103449 - MTEb LTR MaLR -201 178 1 7 1167 324 332 103 30 chr6 76413910 76414019 -73103018 - MLT-int LTR MaLR -1466 269 159 7 1167 2804 79 18 2 chr6 76414019 76414413 -73102624 + MTB LTR MaLR 1 400 0 7 1167 324 332 103 30 chr6 76414413 76414536 -73102501 - MLT-int LTR MaLR -1577 158 21 7 1168 782 304 5 5 chr6 76415961 76416176 -73100861 - B3 SINE B2 0 216 2 7 1168 663 283 19 19 chr6 76416196 76416405 -73100632 - B3 SINE B2 -6 210 2 7 1168 237 120 18 91 chr6 76416491 76416546 -73100491 - B1_Mus2 SINE Alu 0 150 97 7 1168 180 0 0 0 chr6 76416703 76416723 -73100314 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1168 1002 289 79 14 chr6 76417266 76417620 -73099417 + MTEb LTR MaLR 3 379 0 7 1168 1746 240 85 39 chr6 76420269 76420811 -73096226 + RMER2 LTR ERV1 1 567 0 7 1168 27 0 0 0 chr6 76420812 76420839 -73096198 + AT_rich Low_complexity Low_complexity 1 27 0 7 1168 39013 34 0 0 chr6 76421211 76426625 -73090412 - L1Md_T LINE L1 0 6582 1170 7 1168 4666 156 24 30 chr6 76426631 76427557 -73089480 - L1Md_T LINE L1 -5411 1205 286 7 1168 802 119 7 7 chr6 76428292 76428424 -73088613 + (TC)n Simple_repeat Simple_repeat 1 133 0 7 1168 978 165 60 0 chr6 76428424 76428606 -73088431 - B2_Mm2 SINE B2 -1 194 2 7 1168 802 119 7 7 chr6 76428606 76428617 -73088420 + (TC)n Simple_repeat Simple_repeat 2 12 0 7 1168 330 231 77 0 chr6 76428828 76428906 -73088131 - MER20 DNA MER1_type -66 153 70 7 1168 1943 126 50 13 chr6 76429532 76429865 -73087172 + Lx2A LINE L1 6201 6860 -148 7 1168 8142 32 14 1 chr6 76429865 76430850 -73086187 + L1Md_F3 LINE L1 5587 6584 0 7 1168 994 244 48 135 chr6 76430850 76431013 -73086024 + Lx2A LINE L1 6510 6654 0 7 1168 256 226 0 70 chr6 76431346 76431403 -73085634 + ID SINE ID 4 56 -168 7 1168 322 317 0 19 chr6 76431406 76431509 -73085528 + B4A SINE B4 168 268 -24 7 1168 504 154 8 25 chr6 76431618 76431738 -73085299 + GA-rich Low_complexity Low_complexity 4 121 0 7 1168 183 286 69 28 chr6 76432223 76432295 -73084742 - L2 LINE L2 -796 2623 2549 7 1168 183 162 0 0 chr6 76432462 76432499 -73084538 + T-rich Low_complexity Low_complexity 1 37 0 7 1168 2817 52 9 0 chr6 76432899 76433242 -73083795 - ORR1A1 LTR MaLR 0 346 1 7 1168 13088 70 8 7 chr6 76433242 76435032 -73082005 - ORR1A1-int LTR MaLR 0 1792 1 7 1168 2896 43 0 3 chr6 76435032 76435379 -73081658 - ORR1A1 LTR MaLR 0 346 1 7 1168 1174 243 118 37 chr6 76435620 76435787 -73081250 - ORR1C2 LTR MaLR 0 384 191 7 1168 283 74 36 18 chr6 76435787 76435842 -73081195 + (CAGAGA)n Simple_repeat Simple_repeat 4 59 0 7 1168 1174 243 118 37 chr6 76435842 76436029 -73081008 - ORR1C2 LTR MaLR -194 190 1 7 1168 216 0 0 0 chr6 76436800 76436824 -73080213 + (CAA)n Simple_repeat Simple_repeat 3 26 0 7 1168 376 333 10 10 chr6 76436824 76436921 -73080116 + B4A SINE B4 2 98 -194 7 1168 251 167 0 0 chr6 76437005 76437047 -73079990 - MT2B LTR ERVL -559 42 1 7 1168 2876 89 14 0 chr6 76437694 76438108 -73078929 - BGLII LTR ERVK 0 421 2 7 1168 210 207 35 35 chr6 76438267 76438352 -73078685 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 7 1168 225 0 0 0 chr6 76438422 76438447 -73078590 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1168 731 178 0 22 chr6 76438461 76438639 -73078398 + (TA)n Simple_repeat Simple_repeat 1 174 0 7 1168 207 0 0 0 chr6 76438987 76439010 -73078027 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1168 336 48 0 0 chr6 76439173 76439215 -73077822 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1168 201 39 0 0 chr6 76439766 76439792 -73077245 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1168 1010 90 21 0 chr6 76439846 76439990 -73077047 - B1_Mus1 SINE Alu 0 148 2 7 1168 30 0 0 0 chr6 76440668 76440698 -73076339 + AT_rich Low_complexity Low_complexity 1 30 0 7 1168 219 133 0 0 chr6 76441601 76441646 -73075391 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1168 297 0 0 0 chr6 76441647 76441680 -73075357 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1168 5101 72 1 0 chr6 76441996 76442653 -73074384 + L1_Mur1 LINE L1 5122 5779 -107 7 1168 1526 201 91 21 chr6 76442653 76442984 -73074053 - ORR1C1 LTR MaLR -21 357 4 7 1168 2725 188 14 121 chr6 76442986 76443139 -73073898 - ORR1C1-int LTR MaLR 0 1509 1408 7 1168 4506 43 0 0 chr6 76443139 76443678 -73073359 + L1Md_T LINE L1 6044 6582 0 7 1168 2737 188 14 121 chr6 76443678 76444208 -73072829 - ORR1C1-int LTR MaLR -102 1407 899 7 1168 625 264 179 29 chr6 76444208 76444528 -73072509 - RLTR9A LTR ERVK 0 368 1 7 1168 792 268 70 84 chr6 76444528 76444642 -73072395 - ORR1C1-int LTR MaLR -590 780 655 7 1168 1346 91 0 0 chr6 76444642 76444829 -73072208 - L1Md_T LINE L1 0 6582 6396 7 1168 792 268 70 84 chr6 76444829 76445055 -73071982 - ORR1C1-int LTR MaLR -716 654 445 7 1168 584 157 72 0 chr6 76445055 76445208 -73071829 + Lx2 LINE L1 5952 6115 -882 7 1168 1278 97 41 59 chr6 76445208 76445427 -73071610 + LTRIS2 LTR ERV1 90 304 -260 7 1168 324 0 0 0 chr6 76445427 76445463 -73071574 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1168 217 222 0 18 chr6 76447962 76448017 -73069020 + (CCGGG)n Simple_repeat Simple_repeat 3 56 0 7 1168 1731 124 7 11 chr6 76448097 76448375 -73068662 + LTRIS3 LTR ERV1 236 512 0 7 1168 4051 121 33 71 chr6 76448482 76449211 -73067826 - Lx2A1 LINE L1 -7 7001 6301 7 1168 515 301 13 71 chr6 76449213 76449438 -73067599 - B4A SINE B4 -78 214 3 7 1168 239 98 16 47 chr6 76449667 76449731 -73067306 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 1168 227 244 136 58 chr6 76450146 76450337 -73066700 - L1MEc LINE L1 -5309 1091 886 7 1168 23 33 0 0 chr6 76450364 76450394 -73066643 + AT_rich Low_complexity Low_complexity 1 30 0 7 1168 533 311 66 52 chr6 76451305 76451576 -73065461 - Lx8 LINE L1 -124 7349 7075 7 1168 247 268 56 44 chr6 76451578 76451668 -73065369 + MT2A LTR ERVL 57 147 -386 7 1168 431 279 41 8 chr6 76451594 76451717 -73065320 + MTE2a LTR MaLR 71 197 -182 7 1168 879 296 211 85 chr6 76451876 76452657 -73064380 + MTC-int LTR MaLR 1 922 -336 7 1168 1222 106 32 11 chr6 76452657 76452847 -73064190 - B2_Mm2 SINE B2 -1 194 1 7 1168 879 296 211 85 chr6 76452847 76452949 -73064088 + MTC-int LTR MaLR 923 1016 -242 7 1168 708 45 0 0 chr6 76452949 76453037 -73064000 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 7 1168 879 314 206 83 chr6 76453037 76453262 -73063775 + MTC-int LTR MaLR 1017 1109 -149 7 1168 635 294 139 55 chr6 76453263 76453633 -73063404 + MTE2a LTR MaLR 1 370 -9 7 1168 2880 97 0 0 chr6 76453709 76454132 -73062905 - L1_Mm LINE L1 -318 5565 5143 7 1168 1687 83 0 9 chr6 76454132 76454363 -73062674 + L1_Mus1 LINE L1 6339 6567 0 7 1168 588 272 120 22 chr6 76454672 76454939 -73062098 - Lx8 LINE L1 0 7473 7181 7 1168 25 75 0 0 chr6 76455282 76455335 -73061702 + AT_rich Low_complexity Low_complexity 1 53 0 7 1168 383 284 0 56 chr6 76455351 76455459 -73061578 - B1F1 SINE Alu -47 102 1 7 1168 22 35 0 0 chr6 76455520 76455549 -73061488 + AT_rich Low_complexity Low_complexity 1 29 0 7 1168 38 39 0 0 chr6 76456627 76456679 -73060358 + AT_rich Low_complexity Low_complexity 1 52 0 7 1168 30 0 0 0 chr6 76456859 76456889 -73060148 + AT_rich Low_complexity Low_complexity 1 30 0 7 1168 243 0 0 0 chr6 76457524 76457551 -73059486 + (TA)n Simple_repeat Simple_repeat 2 28 0 7 1168 826 288 43 20 chr6 76458134 76458389 -73058648 - B4A SINE B4 0 292 32 7 1168 380 295 103 29 chr6 76458566 76458943 -73058094 - L1ME1 LINE L1 -217 5962 5558 7 1168 240 238 0 0 chr6 76458989 76459052 -73057985 + CT-rich Low_complexity Low_complexity 2 64 0 7 1168 2856 226 117 4 chr6 76459352 76460309 -73056728 - Lx5 LINE L1 -5 7053 5939 7 1168 7895 49 3 1 chr6 76460493 76461830 -73055207 - L1Md_F3 LINE L1 0 6584 5249 7 1168 522 0 0 0 chr6 76461830 76461888 -73055149 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 1168 7154 69 13 0 chr6 76461888 76462227 -73054810 - L1Md_F3 LINE L1 -635 5248 4897 7 1168 717 245 163 49 chr6 76463040 76463366 -73053671 + ORR1D2 LTR MaLR 5 367 -3 7 1168 681 291 89 54 chr6 76463492 76464099 -73052938 - L1ME1 LINE L1 -2017 4129 3502 7 1168 414 0 0 0 chr6 76464323 76464369 -73052668 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1168 2044 144 69 23 chr6 76464370 76464760 -73052277 + RLTR9E LTR ERVK 1 408 -1 7 1168 234 0 0 0 chr6 76464760 76464786 -73052251 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 1168 682 266 6 6 chr6 76464921 76465099 -73051938 + B3A SINE B2 5 182 -16 7 1168 672 93 0 0 chr6 76465477 76465574 -73051463 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 7 1168 1957 214 114 6 chr6 76465574 76466072 -73050965 - Lx5 LINE L1 -11 7039 6498 7 1168 458 258 56 8 chr6 76466894 76467019 -73050018 + MER20 DNA MER1_type 4 134 -85 7 1168 475 317 99 50 chr6 76467092 76467534 -73049503 - L1MC LINE L1 -2878 3268 2805 7 1168 352 246 27 0 chr6 76467551 76467728 -73049309 - RCHARR1 DNA MER1_type 0 974 765 7 1168 975 292 80 6 chr6 76467725 76468039 -73048998 - RCHARR1 DNA MER1_type -636 338 2 7 1168 720 277 163 49 chr6 76468879 76469117 -73047920 - MTE2a LTR MaLR 0 379 109 7 1168 624 97 0 0 chr6 76469117 76469210 -73047827 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 7 1168 720 277 163 49 chr6 76469210 76469278 -73047759 - MTE2a LTR MaLR -271 108 40 7 1168 21 57 0 0 chr6 76469678 76469713 -73047324 + AT_rich Low_complexity Low_complexity 1 35 0 7 1168 627 266 64 16 chr6 76470158 76470345 -73046692 + B3A SINE B2 3 198 0 7 1168 1096 61 0 0 chr6 76470346 76470478 -73046559 - B1_Mus1 SINE Alu -15 133 2 7 1168 1018 89 22 0 chr6 76470888 76471023 -73046014 + B1_Mus1 SINE Alu 1 138 -10 7 1168 292 295 22 33 chr6 76471050 76471141 -73045896 - B2_Mm2 SINE B2 -100 95 6 7 1168 542 217 0 9 chr6 76471178 76471285 -73045752 - B3 SINE B2 0 216 111 7 1168 253 359 76 106 chr6 76471455 76471692 -73045345 - MLT2D LTR ERVL -48 366 137 7 1168 661 308 0 11 chr6 76472065 76472249 -73044788 + MTEa LTR MaLR 1 182 -197 7 1168 1275 154 4 43 chr6 76472547 76472805 -73044232 - L1Md_A LINE L1 -2 6580 6333 7 1168 1587 217 62 41 chr6 76473294 76473712 -73043325 + Lx5 LINE L1 6619 7045 -5 8 1168 712 252 26 114 chr6 76473725 76473953 -73043084 + MTEa LTR MaLR 167 374 -5 7 1168 410 327 62 28 chr6 76475071 76475282 -73041755 + RMER15 LTR ERVL 321 538 -37 8 1168 538 322 58 49 chr6 76475395 76475774 -73041263 + MLT1D LTR MaLR 108 496 -9 8 1168 555 313 106 8 chr6 76476122 76476489 -73040548 + MER68-int LTR ERVL 2537 2939 -51 8 1168 396 0 0 0 chr6 76476751 76476795 -73040242 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1168 371 283 0 63 chr6 76476795 76476923 -73040114 + ORR1D1 LTR MaLR 24 149 -235 8 1168 396 295 0 79 chr6 76477165 76477279 -73039758 - B3A SINE B2 -70 128 24 8 1168 246 174 0 0 chr6 76477485 76477531 -73039506 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 8 1168 230 146 241 12 chr6 76477624 76477707 -73039330 + Lx8 LINE L1 7372 7473 0 8 1168 22 0 0 0 chr6 76478606 76478628 -73038409 + AT_rich Low_complexity Low_complexity 1 22 0 8 1168 829 321 101 20 chr6 76479309 76479894 -73037143 - Lx8 LINE L1 -9 7464 6833 8 1168 252 301 75 0 chr6 76481293 76481386 -73035651 + RMER12 LTR ERVK 745 844 -478 8 1168 7277 101 11 1 chr6 76481694 76483162 -73033875 + L1_Mus4 LINE L1 5148 6632 -4 8 1168 441 267 101 29 chr6 76484048 76484187 -73032850 - B1_Mur1 SINE Alu 0 149 1 8 1168 854 218 55 43 chr6 76484197 76484451 -73032586 - Lx7 LINE L1 -75 7621 7365 8 1168 311 65 22 0 chr6 76484452 76484498 -73032539 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1168 1486 44 0 0 chr6 76484514 76484697 -73032340 + L1Md_F2 LINE L1 5404 5586 -297 8 1168 7963 50 1 5 chr6 76484697 76485687 -73031350 + L1Md_F2 LINE L1 5587 6572 -10 8 1168 267 272 12 0 chr6 76485727 76485808 -73031229 - Lx7 LINE L1 -354 7342 7261 8 1168 32265 64 4 11 chr6 76485835 76491023 -73026014 + L1Md_F2 LINE L1 441 5585 -298 8 1168 7959 45 3 17 chr6 76491024 76492034 -73025003 + L1Md_F2 LINE L1 5587 6582 0 8 1168 1457 217 98 13 chr6 76492053 76492449 -73024588 - Lx7 LINE L1 -453 7243 6814 8 1168 373 347 31 31 chr6 76492731 76492898 -73024139 + B3A SINE B2 1 170 -28 8 1168 1011 64 0 0 chr6 76492898 76493038 -73023999 + (TC)n Simple_repeat Simple_repeat 1 140 0 8 1168 373 347 31 31 chr6 76493038 76493066 -73023971 + B3A SINE B2 171 196 -2 8 1168 252 59 0 0 chr6 76493944 76493978 -73023059 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1168 2484 187 17 25 chr6 76494547 76495078 -73021959 - RLTR11A2 LTR ERVK 0 527 1 8 1168 1782 185 56 13 chr6 76495312 76495690 -73021347 + ORR1B1 LTR MaLR 1 394 0 8 1168 22 0 0 0 chr6 76495995 76496017 -73021020 + AT_rich Low_complexity Low_complexity 1 22 0 8 1168 631 245 0 7 chr6 76497113 76497253 -73019784 + B1_Mur1 SINE Alu 1 139 -10 8 1168 453 19 0 0 chr6 76497443 76497497 -73019540 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1168 418 191 127 42 chr6 76497497 76497633 -73019404 + Lx7 LINE L1 7548 7696 0 8 1168 28 29 0 0 chr6 76497782 76497817 -73019220 + AT_rich Low_complexity Low_complexity 1 35 0 8 1168 2139 147 32 51 chr6 76497833 76498243 -73018794 - Lx LINE L1 -6 6648 6247 8 1168 5660 157 60 0 chr6 76498248 76499310 -73017727 - L1_Mm LINE L1 -127 5756 4631 8 1168 4047 118 14 27 chr6 76499293 76500000 -73017037 - MusHAL1 LINE L1 -846 1866 1169 8 1168 6924 119 19 12 chr6 76500000 76501410 -73015627 - L1VL2 LINE L1 -1544 2071 658 1 1168 207 0 0 0 chr6 76501410 76501433 -73015604 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1168 1174 62 0 0 chr6 76501433 76501577 -73015460 - B1_Mm SINE Alu -2 145 2 3 1168 5536 156 11 17 chr6 76501577 76502133 -73014904 - L1VL2 LINE L1 -5678 657 97 1 1168 4289 101 30 0 chr6 76502459 76503130 -73013907 - L1_Mus2 LINE L1 -718 5918 5235 4 1168 4428 97 13 39 chr6 76503130 76503819 -73013218 + L1_Mus2 LINE L1 5896 6566 0 4 1168 550 322 53 35 chr6 76503881 76504222 -73012815 + L1MA4 LINE L1 5563 5909 -391 5 1168 551 283 66 6 chr6 76504567 76504734 -73012303 - B3 SINE B2 -13 203 27 6 1168 6667 36 5 1 chr6 76504753 76505563 -73011474 - L1Md_F3 LINE L1 -2 6582 5770 7 1168 1791 75 118 0 chr6 76505558 76505813 -73011224 - L1_Mus1 LINE L1 -6 6561 6277 8 1168 2055 57 34 0 chr6 76505815 76506080 -73010957 + L1_Mus1 LINE L1 5639 5912 -655 9 1168 370 180 48 29 chr6 76507888 76507991 -73009046 + L1_Rod LINE L1 4794 4898 -949 1 1168 7291 182 75 54 chr6 76508016 76509459 -73007578 + Lx2 LINE L1 4540 6102 -895 1 1168 954 89 52 0 chr6 76509459 76509594 -73007443 + B1_Mus1 SINE Alu 7 148 0 1 1168 7291 182 75 54 chr6 76509594 76510419 -73006618 + Lx2 LINE L1 6103 6997 0 1 1168 9753 189 34 55 chr6 76511059 76514417 -73002620 - Lx5 LINE L1 -3 7047 3745 1 1168 378 0 0 0 chr6 76514417 76514459 -73002578 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 1168 9753 173 32 78 chr6 76514459 76514545 -73002492 - Lx5 LINE L1 -2133 3744 3662 1 1168 6855 191 78 15 chr6 76514539 76515636 -73001401 - Lx5 LINE L1 -2686 3191 2050 1 1168 438 20 0 0 chr6 76515636 76515687 -73001350 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1168 6855 191 78 15 chr6 76515687 76515835 -73001202 - Lx5 LINE L1 -3828 2049 1894 1 1168 4869 70 14 8 chr6 76515835 76516485 -73000552 - L1Md_F2 LINE L1 -2 6580 5927 1 1168 6855 191 78 15 chr6 76516485 76516885 -73000152 - Lx5 LINE L1 -3984 1893 1442 1 1168 5841 75 7 5 chr6 76516885 76517658 -72999379 + L1Md_F2 LINE L1 5795 6568 -14 1 1168 26 0 0 0 chr6 76517658 76517684 -72999353 + AT_rich Low_complexity Low_complexity 1 26 0 1 1168 5999 129 89 20 chr6 76517685 76518802 -72998235 - Lx3C LINE L1 -508 5378 4185 1 1168 2582 145 72 12 chr6 76518800 76519444 -72997593 + Lx3C LINE L1 5382 6079 -897 1 1168 1299 211 81 21 chr6 76519440 76519725 -72997312 + Lx5 LINE L1 6672 6973 -77 2 1168 507 45 0 0 chr6 76519835 76519901 -72997136 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2 1168 287 269 102 131 chr6 76520295 76520432 -72996605 + ORR1E LTR MaLR 224 356 -3 2 1168 307 337 72 89 chr6 76520565 76520790 -72996247 + L1ME3B LINE L1 5939 6161 -79 2 1168 231 299 51 25 chr6 76520790 76520869 -72996168 - ID2 SINE ID -1 82 2 2 1168 307 337 72 89 chr6 76520869 76520936 -72996101 + L1ME3B LINE L1 6162 6226 -14 2 1168 422 298 41 34 chr6 76521784 76521930 -72995107 + B1F SINE Alu 1 147 -2 2 1168 905 309 102 10 chr6 76522469 76522773 -72994264 + MTE2b LTR MaLR 35 366 -13 2 1168 1580 221 168 32 chr6 76522779 76523308 -72993729 + MT2B LTR ERVL 1 601 0 2 1168 696 223 0 0 chr6 76523911 76524086 -72992951 + (TATATG)n Simple_repeat Simple_repeat 6 180 0 2 1168 192 152 0 0 chr6 76524094 76524127 -72992910 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1168 473 324 75 6 chr6 76524362 76524536 -72992501 - B4A SINE B4 -6 286 101 3 1168 821 256 37 74 chr6 76524666 76524936 -72992101 + B4A SINE B4 33 292 0 3 1168 303 155 0 17 chr6 76525341 76525400 -72991637 - Lx8 LINE L1 -11 7462 7405 3 1168 387 0 0 0 chr6 76525642 76525685 -72991352 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1168 210 241 0 0 chr6 76525685 76525720 -72991317 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1168 540 0 0 0 chr6 76525720 76525780 -72991257 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 3 1168 210 241 0 0 chr6 76525780 76525798 -72991239 + (TA)n Simple_repeat Simple_repeat 2 19 0 3 1168 311 295 149 10 chr6 76526050 76526245 -72990792 - L1M4 LINE L1 -3396 2750 2529 3 1168 660 64 0 0 chr6 76526464 76526558 -72990479 + (TG)n Simple_repeat Simple_repeat 2 95 0 3 1168 948 24 16 8 chr6 76526900 76527028 -72990009 + (TAGA)n Simple_repeat Simple_repeat 4 132 0 3 1168 423 0 0 0 chr6 76527095 76527142 -72989895 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1168 315 49 0 0 chr6 76527452 76527493 -72989544 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1168 231 36 0 0 chr6 76528895 76528923 -72988114 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 1168 870 103 0 0 chr6 76529121 76529237 -72987800 + L1Md_F2 LINE L1 5470 5585 -298 4 1168 7546 76 2 3 chr6 76529238 76530235 -72986802 + L1Md_F2 LINE L1 5587 6582 0 4 1168 220 105 35 17 chr6 76530311 76530369 -72986668 + A-rich Low_complexity Low_complexity 2 60 0 4 1168 379 327 40 57 chr6 76530410 76530502 -72986535 + L1MD1 LINE L1 5655 5748 -611 4 1168 272 48 24 0 chr6 76530502 76530544 -72986493 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1168 1144 69 7 0 chr6 76530544 76530689 -72986348 - B1_Mus1 SINE Alu -2 146 1 4 1168 379 327 40 57 chr6 76530689 76530770 -72986267 + L1MD1 LINE L1 5749 5825 -534 4 1168 337 370 16 8 chr6 76530858 76530986 -72986051 + RSINE1 SINE B4 4 132 -33 4 1168 219 133 0 0 chr6 76530990 76531035 -72986002 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1168 447 19 0 0 chr6 76531035 76531087 -72985950 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1168 7244 53 15 0 chr6 76531148 76532070 -72984967 + L1Md_F3 LINE L1 5635 6570 -14 5 1168 515 321 98 14 chr6 76532123 76532398 -72984639 + L1MD1 LINE L1 5906 6203 -39 4 1168 498 354 6 12 chr6 76532400 76532563 -72984474 + RSINE1 SINE B4 4 165 0 5 1168 701 328 120 67 chr6 76533300 76533790 -72983247 + MT2A LTR ERVL 18 533 0 5 1168 688 312 26 5 chr6 76533824 76533966 -72983071 + B3A SINE B2 2 147 -51 5 1168 501 71 0 0 chr6 76533966 76534036 -72983001 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1168 688 272 38 136 chr6 76534036 76534106 -72982931 + B3A SINE B2 125 194 -4 5 1168 504 295 137 0 chr6 76534652 76534842 -72982195 + B3 SINE B2 1 216 0 5 1168 330 45 0 0 chr6 76534998 76535042 -72981995 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 5 1168 1198 196 0 0 chr6 76535147 76535372 -72981665 - URR1A DNA MER1_type 0 226 2 5 1168 292 148 0 35 chr6 76535516 76535597 -72981440 + Lx3_Mus LINE L1 6038 6134 -875 5 1168 5598 115 4 40 chr6 76535591 76536638 -72980399 - Lx3_Mus LINE L1 -956 6053 5042 6 1168 471 35 0 0 chr6 76536742 76536799 -72980238 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 6 1168 208 0 94 0 chr6 76536799 76536831 -72980206 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 6 1168 887 173 0 6 chr6 76536831 76537005 -72980032 + GA-rich Low_complexity Low_complexity 1 173 0 6 1168 537 337 63 19 chr6 76537235 76537504 -72979533 - Lx8 LINE L1 -370 7103 6823 6 1168 1223 296 88 48 chr6 76537585 76538416 -72978621 + HERVL74-int LTR ERVL 1201 1998 -1558 6 1168 378 278 115 21 chr6 76538638 76538829 -72978208 + HERVL74-int LTR ERVL 2199 2407 -3278 6 1168 29 28 0 0 chr6 76539491 76539527 -72977510 + AT_rich Low_complexity Low_complexity 1 36 0 6 1168 400 318 30 15 chr6 76539541 76539793 -72977244 - RMER15 LTR ERVL -13 562 279 6 1168 5011 117 19 1 chr6 76539835 76540591 -72976446 - L1_Mus4 LINE L1 -7 6629 5861 6 1168 14649 134 18 17 chr6 76540593 76542823 -72974214 - L1VL4 LINE L1 -2243 3900 1656 6 1168 2374 43 0 10 chr6 76542823 76543126 -72973911 - L1Md_F2 LINE L1 -12 6570 6271 7 1168 14649 166 18 19 chr6 76543126 76544223 -72972814 - L1VL4 LINE L1 -2259 1655 559 6 1168 180 0 0 0 chr6 76544348 76544368 -72972669 + (CCA)n Simple_repeat Simple_repeat 1 20 0 7 1168 375 23 0 0 chr6 76544817 76544861 -72972176 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 7 1168 318 106 0 0 chr6 76544902 76544949 -72972088 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1168 406 200 61 24 chr6 76545002 76545166 -72971871 + (TCTA)n Simple_repeat Simple_repeat 4 173 0 7 1168 1069 269 32 14 chr6 76545179 76545462 -72971575 - ORR1D1 LTR MaLR -2 372 85 7 1168 303 28 0 0 chr6 76545531 76545567 -72971470 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1169 209 347 29 39 chr6 76547054 76547156 -72969881 + MIRb SINE MIR 28 128 -140 7 1169 267 31 0 0 chr6 76547265 76547297 -72969740 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1169 394 295 0 0 chr6 76548174 76548269 -72968768 - B3A SINE B2 -100 98 4 7 1169 743 243 54 0 chr6 76548318 76548503 -72968534 - Lx6 LINE L1 0 7460 7266 8 1169 542 226 70 34 chr6 76548532 76548743 -72968294 + L1_Mur1 LINE L1 674 754 -6228 8 1169 3172 178 99 48 chr6 76548743 76549599 -72967438 + RMER17A2 LTR ERVK 1 900 -6 8 1169 790 173 83 36 chr6 76549599 76549767 -72967270 + L1_Mur1 LINE L1 759 934 -6048 8 1169 3333 95 0 17 chr6 76549765 76550248 -72966789 - L1_Mur1 LINE L1 -381 5505 5031 8 1169 685 229 11 14 chr6 76550271 76550465 -72966572 + Lx6 LINE L1 6195 6380 -1316 8 1169 300 91 0 0 chr6 76550483 76550527 -72966510 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1169 204 125 0 0 chr6 76550668 76550700 -72966337 + (TA)n Simple_repeat Simple_repeat 1 32 0 8 1169 1059 220 44 75 chr6 76550710 76551030 -72966007 + L1_Mur3 LINE L1 5520 5829 -51 8 1169 21 0 0 0 chr6 76551085 76551106 -72965931 + AT_rich Low_complexity Low_complexity 1 21 0 8 1169 248 214 29 0 chr6 76551194 76551264 -72965773 - Lx9 LINE L1 -156 7488 7417 8 1169 213 211 0 0 chr6 76551274 76551326 -72965711 + (TA)n Simple_repeat Simple_repeat 1 52 0 9 1169 1686 217 122 5 chr6 76551355 76551725 -72965312 - MTC LTR MaLR -8 413 1 9 1169 366 23 0 0 chr6 76552554 76552597 -72964440 + (TATG)n Simple_repeat Simple_repeat 2 44 0 9 1169 3772 181 54 10 chr6 76552597 76553305 -72963732 - Lx5 LINE L1 -21 7029 6291 9 1169 24 67 0 0 chr6 76553412 76553457 -72963580 + AT_rich Low_complexity Low_complexity 1 45 0 9 1169 28 0 0 0 chr6 76553848 76553876 -72963161 + AT_rich Low_complexity Low_complexity 1 28 0 9 1169 555 179 0 0 chr6 76553928 76554034 -72963003 + CT-rich Low_complexity Low_complexity 2 107 0 9 1169 667 278 136 20 chr6 76554130 76554380 -72962657 - B4 SINE B4 -12 280 2 9 1169 594 0 0 0 chr6 76554457 76554523 -72962514 + (TTTTA)n Simple_repeat Simple_repeat 5 70 0 9 1169 246 360 112 17 chr6 76554816 76554932 -72962105 + B3 SINE B2 60 186 -30 9 1169 198 103 0 0 chr6 76554949 76554978 -72962059 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 1 1169 477 0 0 0 chr6 76555317 76555370 -72961667 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1169 381 372 12 55 chr6 76555664 76555829 -72961208 + B4A SINE B4 3 160 -132 1 1169 380 319 35 9 chr6 76556160 76556274 -72960763 - MLT1F2 LTR MaLR -438 122 6 1 1169 5913 141 16 6 chr6 76556824 76558074 -72958963 + Lx LINE L1 5394 6654 0 1 1169 405 0 0 0 chr6 76558075 76558120 -72958917 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1169 265 242 0 0 chr6 76558884 76558950 -72958087 + CT-rich Low_complexity Low_complexity 1 66 0 1 1169 501 47 0 0 chr6 76558952 76559016 -72958021 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1169 373 266 5 109 chr6 76559305 76559516 -72957521 - L1_Mur3 LINE L1 -605 5275 5087 1 1169 241 360 156 25 chr6 76561142 76561456 -72955581 - LTR16B1 LTR ERVL -55 425 71 1 1169 1144 210 9 18 chr6 76561567 76561785 -72955252 + B3 SINE B2 1 216 0 1 1169 410 298 191 6 chr6 76561963 76562125 -72954912 - RMER15 LTR ERVL -18 557 366 1 1169 248 210 31 46 chr6 76562305 76562370 -72954667 - RMER15 LTR ERVL -511 64 1 1 1169 327 323 12 11 chr6 76562523 76562624 -72954413 + B1F2 SINE Alu 1 97 -52 1 1169 240 35 0 0 chr6 76562656 76562685 -72954352 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1 1169 34454 65 3 5 chr6 76562826 76568372 -72948665 - L1Md_F2 LINE L1 -659 5923 392 1 1169 1619 26 5 0 chr6 76568439 76568628 -72948409 + B2_Mm1t SINE B2 1 190 -3 1 1169 240 333 115 52 chr6 76568777 76568951 -72948086 + MER5A DNA MER1_type 4 188 -1 1 1169 566 348 6 48 chr6 76569571 76569737 -72947300 - RSINE1 SINE B4 -4 161 3 1 1169 213 121 0 0 chr6 76570649 76570682 -72946355 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1 1169 589 142 0 16 chr6 76571530 76571659 -72945378 + (TA)n Simple_repeat Simple_repeat 2 128 0 1 1169 357 24 0 0 chr6 76571977 76572019 -72945018 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1169 450 315 16 0 chr6 76572069 76572196 -72944841 - B1_Mur2 SINE Alu -16 133 5 1 1169 201 214 36 0 chr6 76573589 76573645 -72943392 + (CTTTG)n Simple_repeat Simple_repeat 5 62 0 1 1169 300 341 36 15 chr6 76573645 76573782 -72943255 - B1F SINE Alu -5 144 5 1 1169 243 88 0 0 chr6 76574418 76574452 -72942585 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1169 198 0 0 0 chr6 76574512 76574534 -72942503 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1 1169 694 255 37 51 chr6 76574859 76575054 -72941983 - MTE2b LTR MaLR -3 376 185 1 1169 523 294 50 0 chr6 76575054 76575214 -72941823 - ORR1D2 LTR MaLR 0 370 203 1 1169 253 381 10 20 chr6 76575682 76575781 -72941256 + B1F1 SINE Alu 1 98 -51 1 1169 320 344 82 36 chr6 76576172 76576612 -72940425 + Arthur1 DNA Tip100 3008 3467 -480 1 1169 884 306 42 55 chr6 76576632 76577012 -72940025 + LTR40c LTR ERVL 44 418 -47 1 1169 511 265 91 0 chr6 76577541 76577673 -72939364 - B3 SINE B2 -6 210 67 1 1169 252 239 56 0 chr6 76577718 76577789 -72939248 - B3A SINE B2 -121 77 3 1 1169 434 336 39 45 chr6 76577871 76578027 -72939010 - RSINE1 SINE B4 -2 163 9 1 1169 447 148 12 0 chr6 76578308 76578389 -72938648 - Lx2 LINE L1 -1256 5741 5660 1 1169 1060 102 0 0 chr6 76578381 76578538 -72938499 + Lx2 LINE L1 5743 5899 -1098 1 1169 840 115 45 15 chr6 76578538 76578670 -72938367 + RLTR17 LTR ERVK 1 136 -556 1 1169 2484 171 11 48 chr6 76578673 76579133 -72937904 + RLTR17 LTR ERVK 250 692 0 1 1169 6261 129 59 17 chr6 76579134 76580191 -72936846 + Lx2 LINE L1 5895 6995 -2 1 1169 24 77 0 0 chr6 76580417 76580469 -72936568 + AT_rich Low_complexity Low_complexity 1 52 0 1 1169 244 261 15 0 chr6 76580557 76580622 -72936415 + MER58C DNA MER1_type 149 214 -1 1 1169 232 321 12 0 chr6 76581117 76581201 -72935836 + GA-rich Low_complexity Low_complexity 2 86 0 1 1169 193 359 121 27 chr6 76581293 76581442 -72935595 - L3 LINE CR1 -64 4425 4263 1 1169 615 117 0 0 chr6 76582204 76582298 -72934739 + (TTCC)n Simple_repeat Simple_repeat 2 95 0 1 1169 302 276 52 82 chr6 76582354 76582488 -72934549 + MTEa LTR MaLR 233 362 -17 1 1169 365 154 0 30 chr6 76582651 76582718 -72934319 + U3 snRNA snRNA 1 65 -152 1 1169 817 309 12 109 chr6 76583096 76583416 -72933621 + B4 SINE B4 4 292 0 1 1169 268 252 67 10 chr6 76583433 76583537 -72933500 - MER58B DNA MER1_type -176 165 56 1 1169 1609 197 89 45 chr6 76586020 76586423 -72930614 + MTC LTR MaLR 1 421 0 1 1169 257 0 30 0 chr6 76586869 76586902 -72930135 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1169 372 297 130 0 chr6 76586982 76587167 -72929870 + MER2 DNA MER2_type 17 225 -120 1 1169 1548 210 63 34 chr6 76587182 76587775 -72929262 - RMER12B LTR ERVK 0 1404 935 1 1169 2133 207 26 26 chr6 76587871 76588368 -72928669 + RMER5 LTR ERV1 25 521 -13 1 1169 1335 84 16 0 chr6 76588368 76588558 -72928479 - L1Md_F2 LINE L1 -332 6250 6058 1 1169 2261 77 3 40 chr6 76588558 76588882 -72928155 + L1Md_F2 LINE L1 6259 6570 -12 1 1169 378 0 0 0 chr6 76591710 76591752 -72925285 + (CTCA)n Simple_repeat Simple_repeat 4 45 0 1 1169 449 265 192 75 chr6 76591791 76592109 -72924928 + ORR1E LTR MaLR 1 355 -4 1 1169 206 125 0 20 chr6 76592419 76592468 -72924569 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1 1169 406 333 98 55 chr6 76593142 76593377 -72923660 - MTE2b LTR MaLR -95 284 40 1 1169 543 227 66 50 chr6 76594413 76594594 -72922443 - B2_Mm2 SINE B2 -11 184 1 1 1169 34268 41 2 8 chr6 76595075 76600275 -72916762 + L1Md_A LINE L1 422 5586 -297 1 1169 7804 47 23 1 chr6 76600275 76601248 -72915789 + L1Md_A LINE L1 5587 6580 -2 1 1169 441 250 39 65 chr6 76601292 76601446 -72915591 + Lx8 LINE L1 7022 7171 -302 1 1169 525 32 0 0 chr6 76601618 76601681 -72915356 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1169 406 283 60 191 chr6 76602249 76602677 -72914360 + MER57F LTR ERV1 4 371 -65 1 1169 1190 43 0 0 chr6 76602677 76602818 -72914219 + B1_Mus2 SINE Alu 1 141 -6 1 1169 333 0 0 0 chr6 76602821 76602858 -72914179 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1169 406 283 60 191 chr6 76602858 76602923 -72914114 + MER57F LTR ERV1 372 432 -4 1 1169 23 86 0 0 chr6 76603585 76603643 -72913394 + AT_rich Low_complexity Low_complexity 1 58 0 1 1169 348 322 0 11 chr6 76603651 76603742 -72913295 + ID_B1 SINE B4 80 169 -55 1 1169 339 85 0 0 chr6 76603745 76603792 -72913245 - ORR1A4 LTR MaLR -8 386 340 1 1169 6976 75 16 12 chr6 76603806 76605215 -72911822 - L1_Mus2 LINE L1 -2 6564 5145 1 1169 1361 186 41 52 chr6 76605215 76605505 -72911532 - ORR1A4 LTR MaLR -42 287 1 1 1169 360 0 0 0 chr6 76605535 76605575 -72911462 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1169 505 337 33 11 chr6 76606081 76606261 -72910776 + Tigger5 DNA MER2_type 59 242 -2164 1 1169 574 291 62 67 chr6 76606803 76606998 -72910039 + B3A SINE B2 10 203 -13 1 1169 26 0 0 0 chr6 76607011 76607037 -72910000 + AT_rich Low_complexity Low_complexity 1 26 0 1 1169 1639 187 60 70 chr6 76607194 76607580 -72909457 + ORR1C2 LTR MaLR 1 382 -2 1 1169 21 0 0 0 chr6 76607822 76607843 -72909194 + AT_rich Low_complexity Low_complexity 1 21 0 1 1169 322 226 23 35 chr6 76608284 76608371 -72908666 + RMER15 LTR ERVL 42 127 -448 1 1169 233 379 132 10 chr6 76608403 76608502 -72908535 + RMER15 LTR ERVL 275 372 -203 1 1169 183 42 0 0 chr6 76608502 76608526 -72908511 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1169 233 379 132 10 chr6 76608526 76608631 -72908406 + RMER15 LTR ERVL 373 504 -71 1 1169 381 225 0 0 chr6 76608786 76608857 -72908180 + Lx8 LINE L1 6519 6589 -884 1 1169 1358 342 37 10 chr6 76609238 76609912 -72907125 + Lx8 LINE L1 6639 7330 -143 1 1169 534 40 13 13 chr6 76610224 76610299 -72906738 + B1_Mur4 SINE Alu 76 150 0 1 1169 24 0 0 0 chr6 76610299 76610323 -72906714 + AT_rich Low_complexity Low_complexity 1 24 0 1 1169 680 268 14 27 chr6 76610751 76610970 -72906067 + B3 SINE B2 1 216 0 1 1169 323 333 0 10 chr6 76612073 76612173 -72904864 - MER103 DNA DNA -67 99 1 1 1169 966 88 33 121 chr6 76612624 76612806 -72904231 - L1_Mus3 LINE L1 -596 6042 5877 1 1169 3780 122 5 0 chr6 76612806 76613363 -72903674 + L1_Mus3 LINE L1 6072 6631 -7 1 1169 228 183 83 14 chr6 76613363 76613375 -72903662 - L1_Mus3 LINE L1 -1174 5876 5860 1 1169 387 0 0 0 chr6 76613460 76613503 -72903534 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1169 204 125 0 0 chr6 76614235 76614267 -72902770 + (CTG)n Simple_repeat Simple_repeat 1 32 0 1 1169 180 0 0 0 chr6 76614270 76614290 -72902747 + (ATG)n Simple_repeat Simple_repeat 2 21 0 1 1169 755 31 0 20 chr6 76614486 76614585 -72902452 + (TTCTCC)n Simple_repeat Simple_repeat 6 102 0 1 1169 271 190 71 7 chr6 76614739 76615027 -72902010 + (TAGA)n Simple_repeat Simple_repeat 1 306 0 1 1169 321 263 33 127 chr6 76615039 76615204 -72901833 - MLT2B4 LTR ERVL -41 526 364 1 1169 672 236 40 17 chr6 76615398 76615575 -72901462 + ORR1D1 LTR MaLR 1 181 -193 1 1169 486 146 0 0 chr6 76615575 76615657 -72901380 + (TTCTC)n Simple_repeat Simple_repeat 1 82 0 1 1169 315 118 0 0 chr6 76615686 76615697 -72901340 + (TC)n Simple_repeat Simple_repeat 1 11 0 1 1169 819 31 0 0 chr6 76615697 76615795 -72901242 + (TTC)n Simple_repeat Simple_repeat 3 100 0 1 1169 315 118 0 0 chr6 76615795 76615834 -72901203 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1169 561 299 9 50 chr6 76615834 76616052 -72900985 + ORR1D1 LTR MaLR 166 374 0 1 1169 270 327 27 18 chr6 76616057 76616169 -72900868 - MLT2D LTR ERVL -301 113 1 1 1169 8137 42 1 3 chr6 76616771 76617869 -72899168 - L1Md_F2 LINE L1 0 6582 5487 1 1169 297 89 0 0 chr6 76617981 76618026 -72899011 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1 1169 843 249 48 24 chr6 76619007 76619197 -72897840 + B3 SINE B2 2 187 -29 1 1169 284 25 50 0 chr6 76619197 76619237 -72897800 + (CATA)n Simple_repeat Simple_repeat 4 45 0 1 1169 843 249 48 24 chr6 76619237 76619256 -72897781 + B3 SINE B2 188 215 -1 1 1169 27 29 0 0 chr6 76619342 76619376 -72897661 + AT_rich Low_complexity Low_complexity 1 34 0 1 1169 353 264 173 0 chr6 76619726 76619836 -72897201 + RSINE1 SINE B4 3 131 -34 1 1169 304 299 109 17 chr6 76619878 76619997 -72897040 - Lx9 LINE L1 -1166 6478 6349 1 1169 270 174 24 142 chr6 76620020 76620147 -72896890 - Lx9 LINE L1 -1376 6268 6157 1 1169 617 245 53 7 chr6 76620180 76620332 -72896705 - B3A SINE B2 -38 160 2 1 1169 25 0 0 0 chr6 76621079 76621104 -72895933 + AT_rich Low_complexity Low_complexity 1 25 0 1 1169 2149 125 12 0 chr6 76622104 76622439 -72894598 + Lx2 LINE L1 6658 6996 -1 2 1169 23 0 0 0 chr6 76624417 76624440 -72892597 + AT_rich Low_complexity Low_complexity 1 23 0 2 1169 531 360 89 26 chr6 76625620 76626048 -72890989 - L1MCa LINE L1 -5238 1270 816 2 1169 24 77 0 0 chr6 76626865 76626917 -72890120 + AT_rich Low_complexity Low_complexity 1 52 0 2 1169 41110 4 0 0 chr6 76627969 76634336 -72882701 - L1Md_A LINE L1 0 6582 215 2 1169 470 275 77 39 chr6 76634774 76634982 -72882055 - MER2 DNA MER2_type -3 342 127 2 1169 217 250 0 0 chr6 76635059 76635107 -72881930 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 2 1169 358 126 39 10 chr6 76635188 76635292 -72881745 + (TATAA)n Simple_repeat Simple_repeat 3 109 0 2 1169 555 312 46 35 chr6 76635404 76635785 -72881252 + MTD LTR MaLR 1 403 -16 2 1169 333 0 0 0 chr6 76636077 76636114 -72880923 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1169 243 280 36 36 chr6 76636724 76636835 -72880202 + GA-rich Low_complexity Low_complexity 4 114 0 2 1169 214 398 12 12 chr6 76636864 76636948 -72880089 + B4A SINE B4 66 149 -143 2 1169 327 296 0 0 chr6 76636890 76636961 -72880076 + PB1D7 SINE Alu 7 77 -43 2 1169 829 282 67 18 chr6 76637109 76637394 -72879643 - Lx8 LINE L1 -184 7289 6991 2 1169 528 264 64 7 chr6 76637811 76637952 -72879085 + B1F SINE Alu 1 149 0 2 1169 690 218 23 0 chr6 76638308 76638482 -72878555 + RCHARR1 DNA MER1_type 655 832 -142 2 1169 252 348 96 48 chr6 76638950 76639116 -72877921 + MER5B DNA MER1_type 4 177 -1 2 1169 292 295 19 19 chr6 76639389 76639496 -72877541 + GA-rich Low_complexity Low_complexity 3 109 0 2 1169 242 278 200 0 chr6 76640634 76640724 -72876313 + B4A SINE B4 126 233 -59 2 1169 666 68 0 0 chr6 76640822 76640910 -72876127 + (GA)n Simple_repeat Simple_repeat 2 89 0 2 1169 261 0 0 0 chr6 76641508 76641537 -72875500 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1169 592 350 5 29 chr6 76641784 76641993 -72875044 + MT2A LTR ERVL 217 420 -113 2 1169 305 328 8 0 chr6 76642048 76642176 -72874861 + (CAT)n Simple_repeat Simple_repeat 1 129 0 2 1169 782 198 136 10 chr6 76642198 76642397 -72874640 + URR1A DNA MER1_type 2 225 -1 2 1169 2992 70 24 7 chr6 76642523 76642937 -72874100 - BGLII LTR ERVK 0 421 1 2 1169 246 286 68 98 chr6 76643023 76643186 -72873851 - RSINE1 SINE B4 -6 159 2 2 1169 303 250 44 0 chr6 76643433 76643593 -72873444 + (TA)n Simple_repeat Simple_repeat 2 168 0 2 1169 25 0 0 0 chr6 76643593 76643618 -72873419 + AT_rich Low_complexity Low_complexity 1 25 0 2 1169 3356 131 74 13 chr6 76644674 76645230 -72871807 + Lx2 LINE L1 6405 6994 -3 2 1169 1446 147 0 0 chr6 76645230 76645454 -72871583 - L1_Mus4 LINE L1 -314 5569 5346 2 1169 5179 101 5 17 chr6 76645453 76646208 -72870829 + L1_Mus4 LINE L1 5601 6346 -290 2 1169 400 323 0 0 chr6 76646208 76646304 -72870733 + B4A SINE B4 49 144 -148 2 1169 222 354 0 0 chr6 76647540 76647622 -72869415 + CT-rich Low_complexity Low_complexity 1 82 0 2 1169 437 360 12 64 chr6 76647622 76647794 -72869243 - RSINE1 SINE B4 0 165 3 2 1169 259 259 32 86 chr6 76648574 76648667 -72868370 - RSINE1 SINE B4 -33 132 45 2 1169 24 32 0 0 chr6 76648904 76648935 -72868102 + AT_rich Low_complexity Low_complexity 1 31 0 2 1169 735 275 10 68 chr6 76649485 76649692 -72867345 - RMER30 DNA MER1_type -1 201 7 2 1169 180 0 0 0 chr6 76649873 76649893 -72867144 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2 1169 635 236 93 27 chr6 76650054 76650311 -72866726 - Lx8 LINE L1 -5 7468 7195 2 1169 408 137 54 14 chr6 76650640 76650714 -72866323 + ID4 SINE ID 3 79 -4 2 1169 466 361 35 22 chr6 76650971 76651188 -72865849 - Lx9 LINE L1 -865 6779 6559 2 1169 1570 195 325 20 chr6 76651188 76651628 -72865409 - RMER15 LTR ERVL -1 574 1 2 1169 466 361 35 22 chr6 76651628 76651642 -72865395 - Lx9 LINE L1 -1086 6558 6545 2 1169 356 301 108 76 chr6 76651834 76651992 -72865045 - ID_B1 SINE B4 -64 228 66 2 1169 385 326 164 65 chr6 76652416 76652678 -72864359 + B4A SINE B4 5 292 0 2 1169 204 255 0 0 chr6 76652678 76652725 -72864312 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1169 316 243 157 59 chr6 76653324 76653477 -72863560 + LTR37A LTR ERV1 245 412 -14 2 1169 512 319 45 35 chr6 76653616 76653643 -72863394 - B3 SINE B2 -16 200 176 2 1169 321 118 0 0 chr6 76653643 76653694 -72863343 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1169 565 314 9 9 chr6 76653694 76653864 -72863173 - B3A SINE B2 -41 175 1 2 1169 249 306 0 0 chr6 76654193 76654255 -72862782 + ZP3AR Satellite Satellite 6 67 -145 2 1169 306 328 70 25 chr6 76654230 76654511 -72862526 + RSINE1 SINE B4 1 281 -11 2 1169 423 0 0 0 chr6 76654519 76654566 -72862471 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1169 682 349 34 37 chr6 76656178 76656473 -72860564 + ORR1E LTR MaLR 60 353 -6 2 1169 714 24 0 0 chr6 76656869 76656953 -72860084 + (GTTTG)n Simple_repeat Simple_repeat 1 84 0 2 1169 261 57 0 0 chr6 76657410 76657445 -72859592 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1169 36 23 0 0 chr6 76657470 76657513 -72859524 + AT_rich Low_complexity Low_complexity 1 43 0 2 1169 1118 75 0 0 chr6 76658664 76658810 -72858227 - B1_Mus1 SINE Alu -1 147 2 2 1169 546 308 34 34 chr6 76659171 76659346 -72857691 + B4A SINE B4 1 175 -117 2 1169 25 0 0 0 chr6 76659654 76659679 -72857358 + AT_rich Low_complexity Low_complexity 1 25 0 2 1169 474 332 48 112 chr6 76659764 76659987 -72857050 + B4A SINE B4 1 224 -68 2 1169 449 276 68 57 chr6 76659987 76660179 -72856858 + B3A SINE B2 5 198 0 2 1169 474 332 48 112 chr6 76660179 76660246 -72856791 + B4A SINE B4 225 276 -16 2 1169 183 129 0 0 chr6 76660246 76660277 -72856760 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1169 474 332 48 112 chr6 76660277 76660297 -72856740 + B4A SINE B4 277 292 0 2 1169 396 324 28 0 chr6 76661811 76661919 -72855118 + B3A SINE B2 5 115 -83 2 1169 5656 113 11 11 chr6 76661919 76662766 -72854271 - L1_Mus4 LINE L1 -29 6607 5761 2 1169 7810 141 13 8 chr6 76663071 76664373 -72852664 - L1_Mm LINE L1 -131 5752 4445 2 1169 30 45 0 0 chr6 76664920 76664964 -72852073 + AT_rich Low_complexity Low_complexity 1 44 0 2 1169 632 337 79 23 chr6 76664980 76665284 -72851753 + Lx8 LINE L1 6973 7293 -180 2 1169 247 333 0 0 chr6 76665594 76665666 -72851371 + RSINE1 SINE B4 3 74 -91 2 1169 1065 84 0 7 chr6 76665758 76665901 -72851136 - B1_Mus1 SINE Alu -6 142 1 2 1169 29 0 0 0 chr6 76665910 76665939 -72851098 + AT_rich Low_complexity Low_complexity 1 29 0 2 1169 345 353 29 71 chr6 76666046 76666233 -72850804 - B3A SINE B2 0 198 1 2 1169 1085 50 25 0 chr6 76667179 76667340 -72849697 + (TAGA)n Simple_repeat Simple_repeat 1 165 0 2 1169 35 41 0 0 chr6 76668274 76668323 -72848714 + AT_rich Low_complexity Low_complexity 1 49 0 2 1169 890 136 22 28 chr6 76668673 76668854 -72848183 - L1Md_F2 LINE L1 0 6582 6403 2 1169 192 40 0 0 chr6 76669348 76669373 -72847664 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2 1169 958 291 73 36 chr6 76670185 76670531 -72846506 + MTE2a LTR MaLR 20 383 -36 2 1169 612 0 0 0 chr6 76670531 76670599 -72846438 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 1169 958 279 70 38 chr6 76670599 76670631 -72846406 + MTE2a LTR MaLR 343 378 -1 2 1169 475 309 88 32 chr6 76671383 76671718 -72845319 + L1MD LINE L1 5469 5821 -512 2 1169 1302 312 73 20 chr6 76671811 76672423 -72844614 + Lx8 LINE L1 6755 7399 -74 2 1169 4983 58 3 0 chr6 76673045 76673666 -72843371 + L1_Mus1 LINE L1 5944 6566 -1 2 1169 718 231 10 188 chr6 76673756 76673953 -72843084 + B3A SINE B2 34 195 0 2 1169 1232 227 144 99 chr6 76674045 76674602 -72842435 - RMER4B LTR ERVK 0 585 4 2 1169 496 362 28 28 chr6 76675171 76675387 -72841650 + B3 SINE B2 1 216 0 2 1169 24 53 0 0 chr6 76675438 76675476 -72841561 + AT_rich Low_complexity Low_complexity 1 38 0 2 1169 525 58 0 0 chr6 76675633 76675702 -72841335 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1169 207 64 61 41 chr6 76675755 76675804 -72841233 + (TAA)n Simple_repeat Simple_repeat 1 50 0 2 1169 528 278 102 30 chr6 76676019 76676186 -72840851 + B3A SINE B2 11 189 -9 2 1169 324 0 0 0 chr6 76676282 76676318 -72840719 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1169 263 360 0 23 chr6 76676705 76676793 -72840244 + B4A SINE B4 34 119 -173 2 1169 513 47 0 0 chr6 76676960 76677024 -72840013 + (TAA)n Simple_repeat Simple_repeat 2 65 0 2 146 206 346 43 35 chr6 76677066 76677207 -72839830 + L2 LINE L2 2316 2457 -962 2 1170 2010 202 58 8 chr6 76677329 76677722 -72839315 + MTC LTR MaLR 1 413 -8 2 1170 7144 121 10 1 chr6 76678184 76679311 -72837726 + L1Md_F2 LINE L1 98 1205 -5411 2 1170 31259 72 1 2 chr6 76679279 76683765 -72833272 + L1Md_F2 LINE L1 1108 5586 -297 2 1170 8113 45 0 1 chr6 76683766 76684750 -72832287 + L1Md_F2 LINE L1 5588 6570 -12 2 1170 656 297 60 0 chr6 76684810 76684995 -72832042 - MTD LTR MaLR -30 389 194 2 1170 661 268 0 0 chr6 76685030 76685172 -72831865 - MTD LTR MaLR -218 201 60 2 1170 3604 151 17 0 chr6 76685175 76685836 -72831201 + L1_Mur2 LINE L1 3998 4669 -1208 2 1170 30 27 0 0 chr6 76686301 76686338 -72830699 + AT_rich Low_complexity Low_complexity 1 37 0 2 1170 24 32 0 0 chr6 76686380 76686411 -72830626 + AT_rich Low_complexity Low_complexity 1 31 0 2 1170 317 327 133 0 chr6 76686411 76686524 -72830513 - RSINE1 SINE B4 -35 130 3 2 1170 607 308 33 9 chr6 76686875 76687085 -72829952 - ID_B1 SINE B4 -8 216 2 2 1170 188 105 0 73 chr6 76688491 76688532 -72828505 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 2 1170 1826 203 16 131 chr6 76688581 76689085 -72827952 + RLTR25B LTR ERVK 1 446 -582 2 1170 603 176 11 193 chr6 76689681 76689857 -72827180 + RLTR25B LTR ERVK 632 775 -253 2 1170 256 241 200 18 chr6 76689828 76689938 -72827099 + RLTR25B LTR ERVK 974 1103 0 2 1170 3009 61 26 12 chr6 76689974 76690389 -72826648 - BGLII LTR ERVK 0 421 1 2 1170 283 311 0 0 chr6 76690440 76690514 -72826523 - B3A SINE B2 -122 76 3 3 1170 353 274 146 32 chr6 76690746 76690904 -72826133 - MER2 DNA MER2_type -132 213 38 3 1170 1127 311 31 28 chr6 76691102 76691429 -72825608 + MTEa LTR MaLR 10 337 -42 3 1170 1178 55 0 7 chr6 76691449 76691595 -72825442 - B1_Mm SINE Alu 0 147 3 3 1170 746 290 27 5 chr6 76692243 76692430 -72824607 - B3A SINE B2 -3 195 5 3 1170 25 51 0 0 chr6 76693094 76693133 -72823904 + AT_rich Low_complexity Low_complexity 1 39 0 3 1170 405 129 0 0 chr6 76693205 76693267 -72823770 + URR1B DNA MER1_type 164 225 0 3 1170 759 104 0 0 chr6 76696418 76696533 -72820504 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 3 1170 215 321 43 87 chr6 76696755 76696847 -72820190 + RSINE1 SINE B4 2 89 -76 3 1170 342 61 0 0 chr6 76696869 76696918 -72820119 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 3 1170 2467 159 35 60 chr6 76697494 76698383 -72818654 - L1_Mur1 LINE L1 -4392 1494 117 3 1170 7837 136 20 8 chr6 76698409 76699825 -72817212 + Lx3B LINE L1 5542 6969 -4 3 1170 7804 37 14 3 chr6 76700310 76701430 -72815607 - L1Md_F3 LINE L1 0 6584 5455 3 1170 3707 51 0 6 chr6 76701420 76701909 -72815128 + L1Md_F3 LINE L1 4936 5421 -462 3 1170 537 58 0 0 chr6 76702073 76702142 -72814895 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 1170 222 314 40 54 chr6 76702176 76702250 -72814787 - RSINE1 SINE B4 -90 75 3 3 1170 474 18 0 0 chr6 76702626 76702681 -72814356 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1170 609 14 0 0 chr6 76703233 76703303 -72813734 + (TC)n Simple_repeat Simple_repeat 2 71 0 3 1170 441 0 0 0 chr6 76703303 76703351 -72813686 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1170 1041 72 0 0 chr6 76703970 76704109 -72812928 - B1_Mus2 SINE Alu 0 147 9 3 1170 261 0 0 0 chr6 76704601 76704630 -72812407 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1170 330 268 0 0 chr6 76705201 76705272 -72811765 - ID4_ SINE ID -11 72 2 3 1170 779 330 34 60 chr6 76705844 76706225 -72810812 - MLT1A LTR MaLR -3 371 1 3 1170 346 303 23 114 chr6 76707142 76707317 -72809720 - B4A SINE B4 0 292 134 3 1170 358 349 80 31 chr6 76707778 76708003 -72809034 - LTR16E1 LTR ERVL -48 490 255 3 1170 348 24 0 0 chr6 76708313 76708354 -72808683 + (ATG)n Simple_repeat Simple_repeat 3 43 0 3 1170 657 154 7 14 chr6 76708352 76708497 -72808540 + GA-rich Low_complexity Low_complexity 2 145 0 3 1170 694 234 0 0 chr6 76708848 76708985 -72808052 + B1_Mur2 SINE Alu 3 139 -10 3 1170 189 107 0 0 chr6 76709169 76709197 -72807840 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 3 1170 748 307 25 23 chr6 76709584 76709794 -72807243 - B3A SINE B2 0 216 2 3 1170 270 162 0 0 chr6 76710340 76710414 -72806623 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 1170 351 0 0 0 chr6 76710416 76710455 -72806582 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 3 1170 560 354 5 42 chr6 76710991 76711016 -72806021 + B3A SINE B2 1 20 -178 3 1170 2576 172 43 22 chr6 76711016 76711526 -72805511 - RLTR28 LTR ERVL -2 522 2 3 1170 560 354 5 42 chr6 76711526 76711689 -72805348 + B3A SINE B2 21 182 -16 3 1170 257 261 0 14 chr6 76711740 76711810 -72805227 + PB1D10 SINE Alu 11 79 -38 3 1170 1825 165 24 6 chr6 76711956 76712292 -72804745 + ORR1A1 LTR MaLR 5 346 0 3 1170 1166 109 17 0 chr6 76712598 76712773 -72804264 - B2_Mm2 SINE B2 -7 188 11 3 1170 2882 282 67 35 chr6 76712773 76714074 -72802963 - RMER1C Other Other -34 1308 131 3 1170 546 16 0 0 chr6 76714659 76714722 -72802315 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1170 489 34 0 0 chr6 76714767 76714826 -72802211 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1170 27 0 0 0 chr6 76714832 76714859 -72802178 + AT_rich Low_complexity Low_complexity 1 27 0 3 1170 225 0 0 0 chr6 76714885 76714910 -72802127 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1170 380 137 46 75 chr6 76714994 76715099 -72801938 - PB1D9 SINE Alu -1 146 42 3 1170 280 232 0 35 chr6 76715133 76715191 -72801846 - B1_Mus2 SINE Alu -88 59 4 3 1170 277 288 61 0 chr6 76715137 76715203 -72801834 - B4A SINE B4 -150 142 73 3 1170 368 167 0 0 chr6 76715342 76715402 -72801635 - HAL1-3A_ME LINE L1 -823 2035 1976 3 1170 378 0 0 0 chr6 76715403 76715445 -72801592 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1170 222 91 0 0 chr6 76715458 76715491 -72801546 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1170 869 291 77 23 chr6 76716563 76716954 -72800083 - Lx8 LINE L1 -31 7442 7031 3 1170 693 300 69 20 chr6 76716956 76717191 -72799846 - B4 SINE B4 -47 245 8 3 1170 323 336 120 36 chr6 76717298 76717548 -72799489 + L3 LINE CR1 3812 4082 -407 3 1170 234 345 172 64 chr6 76718417 76718621 -72798416 + B4A SINE B4 11 236 -56 3 1170 243 0 0 0 chr6 76718666 76718693 -72798344 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 1170 342 0 0 0 chr6 76718693 76718730 -72798307 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1170 315 0 0 0 chr6 76718730 76718764 -72798273 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1170 445 255 19 19 chr6 76718997 76719101 -72797936 - B3A SINE B2 -86 112 9 3 1170 1108 82 0 0 chr6 76719185 76719331 -72797706 + B1_Mus1 SINE Alu 2 147 -1 3 1170 192 77 0 0 chr6 76719352 76719378 -72797659 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1170 203 220 0 33 chr6 76719481 76719542 -72797495 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 3 1170 316 184 182 11 chr6 76719883 76719971 -72797066 + Lx4B LINE L1 6948 7050 -8 3 1170 522 223 0 0 chr6 76720435 76720538 -72796499 + B3A SINE B2 1 103 -95 3 1170 674 267 51 20 chr6 76720540 76720735 -72796302 - B3 SINE B2 -15 201 1 3 1170 334 315 160 25 chr6 76720875 76721119 -72795918 + L1MD LINE L1 4280 4556 -1590 3 1170 675 309 78 53 chr6 76721583 76721887 -72795150 + B4 SINE B4 2 279 -13 3 1170 387 0 0 0 chr6 76722327 76722370 -72794667 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1170 288 0 0 0 chr6 76722370 76722401 -72794636 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1170 4439 118 13 61 chr6 76722431 76723281 -72793756 + RMER17D2 LTR ERVK 1 809 0 3 1170 228 232 159 0 chr6 76723441 76723510 -72793527 - L2b LINE L2 0 3375 3296 3 1170 8681 83 8 17 chr6 76724297 76726236 -72790801 - L1_Mus1 LINE L1 -4 6563 4642 3 1170 783 340 61 45 chr6 76727424 76727930 -72789107 - MLT2B2 LTR ERVL -1 514 1 3 1170 797 274 49 119 chr6 76728903 76729355 -72787682 + RLTR23 LTR ERV1 11 430 0 3 1170 284 354 44 12 chr6 76729950 76730110 -72786927 - L2 LINE L2 -1313 2106 1942 3 1170 220 244 52 113 chr6 76730350 76730447 -72786590 + B1F1 SINE Alu 14 104 -45 3 1170 330 45 0 0 chr6 76730977 76731021 -72786016 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1170 1033 123 7 0 chr6 76731292 76731438 -72785599 + B1_Mus1 SINE Alu 2 148 0 3 1170 203 61 30 0 chr6 76731677 76731710 -72785327 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 3 1170 854 284 90 23 chr6 76731758 76732068 -72784969 - MTEb LTR MaLR -48 331 1 3 1170 866 151 88 93 chr6 76732536 76732605 -72784432 + Lx3B LINE L1 6747 6825 -148 3 1170 975 97 0 0 chr6 76732605 76732750 -72784287 + (GGGAGA)n Simple_repeat Simple_repeat 4 148 0 3 1170 866 151 88 93 chr6 76732750 76732906 -72784131 + Lx3B LINE L1 6826 6971 -2 3 1170 24 0 0 0 chr6 76732927 76732951 -72784086 + AT_rich Low_complexity Low_complexity 1 24 0 3 1170 257 391 128 31 chr6 76732988 76733215 -72783822 - MIR SINE MIR -2 260 12 3 1170 582 15 0 0 chr6 76733759 76733826 -72783211 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1170 486 0 0 0 chr6 76733826 76733879 -72783158 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1170 469 340 0 42 chr6 76733882 76734048 -72782989 - B3A SINE B2 -38 160 2 3 1170 235 364 65 49 chr6 76735730 76735915 -72781122 + MIRb SINE MIR 13 200 -68 3 1170 2185 98 9 3 chr6 76736113 76736432 -72780605 - L1_Mus3 LINE L1 -3 6635 6315 3 1170 309 340 62 25 chr6 76736642 76736802 -72780235 - MLT1J1 LTR MaLR -244 200 35 3 1170 333 82 0 0 chr6 76738267 76738316 -72778721 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1170 22 0 0 0 chr6 76738322 76738344 -72778693 + AT_rich Low_complexity Low_complexity 1 22 0 3 1170 243 338 0 0 chr6 76738670 76738747 -72778290 + Cheshire DNA MER1_type 211 287 -2133 3 1170 313 286 12 0 chr6 76739341 76739425 -72777612 + MamSINE1 SINE tRNA 23 107 -183 3 1170 688 263 113 0 chr6 76739613 76739807 -72777230 + B3 SINE B2 1 216 0 3 1170 475 266 78 8 chr6 76739983 76740112 -72776925 - B1_Mur2 SINE Alu -6 143 6 3 1170 225 65 0 0 chr6 76740114 76740145 -72776892 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1170 850 282 88 25 chr6 76741317 76741650 -72775387 + MTE2a LTR MaLR 66 419 0 3 1170 1183 283 102 23 chr6 76742650 76743121 -72773916 + RMER5 LTR ERV1 13 520 -14 3 1170 949 306 97 0 chr6 76743280 76743610 -72773427 - ORR1D2 LTR MaLR -3 367 6 3 1170 664 249 83 39 chr6 76744054 76744259 -72772778 + B3 SINE B2 2 215 -1 3 1170 197 380 0 0 chr6 76744275 76744354 -72772683 - MIR SINE MIR -136 126 48 3 1170 365 0 0 22 chr6 76744805 76744851 -72772186 + (TTA)n Simple_repeat Simple_repeat 2 46 0 3 1170 987 211 6 25 chr6 76744975 76745193 -72771844 - ORR1B2 LTR MaLR 0 384 177 3 1170 481 270 34 17 chr6 76745184 76745301 -72771736 - B4A SINE B4 -17 275 157 4 1170 307 288 0 0 chr6 76745418 76745491 -72771546 - B4A SINE B4 -218 74 2 4 1170 182 128 0 25 chr6 76745524 76745564 -72771473 + (TTAA)n Simple_repeat Simple_repeat 1 39 0 4 1170 3479 20 2 0 chr6 76745682 76746077 -72770960 + MTA_Mm LTR MaLR 1 396 0 4 1170 26 0 0 0 chr6 76746117 76746143 -72770894 + AT_rich Low_complexity Low_complexity 1 26 0 4 1170 6766 119 15 9 chr6 76746710 76747728 -72769309 - Lx LINE L1 -3 6651 5627 4 1170 4435 31 0 0 chr6 76747728 76748247 -72768790 - L1Md_A LINE L1 -1 6581 6063 4 1170 8512 25 0 0 chr6 76748276 76749444 -72767593 - L1Md_A LINE L1 0 6582 5415 4 1170 9734 26 0 0 chr6 76749442 76750592 -72766445 + L1Md_A LINE L1 4243 5392 -491 4 1170 1168 128 82 0 chr6 76750605 76750850 -72766187 + L1_Mus4 LINE L1 6289 6596 -42 4 1170 1411 285 76 21 chr6 76751387 76751433 -72765604 - RMER5 LTR ERV1 0 534 481 4 1170 207 0 0 0 chr6 76751433 76751456 -72765581 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1170 1411 285 76 21 chr6 76751456 76751885 -72765152 - RMER5 LTR ERV1 -54 480 34 4 1170 403 0 0 0 chr6 76753044 76753098 -72763939 - L1Md_T LINE L1 0 6582 6529 4 1170 4538 74 2 2 chr6 76753167 76753751 -72763286 - MT2B2 LTR ERVL 0 584 1 4 1170 594 279 19 25 chr6 76754611 76754773 -72762264 - RSINE1 SINE B4 -2 163 3 4 1170 192 77 0 0 chr6 76754887 76754913 -72762124 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1170 329 328 55 50 chr6 76755500 76755702 -72761335 - B4 SINE B4 -55 237 35 4 1170 940 309 107 22 chr6 76756185 76756874 -72760163 - L1MA6 LINE L1 -12 6288 5541 4 1170 535 318 20 10 chr6 76757088 76757288 -72759749 - B3 SINE B2 -13 203 2 4 1170 349 306 113 62 chr6 76758114 76758546 -72758491 + L1MEd LINE L1 655 1108 -5011 4 1170 180 111 0 0 chr6 76758569 76758596 -72758441 + (TAG)n Simple_repeat Simple_repeat 3 29 0 4 1170 538 296 64 43 chr6 76759837 76760070 -72756967 - RMER15 LTR ERVL -13 562 325 4 1170 405 0 0 0 chr6 76760887 76760932 -72756105 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1170 1104 65 0 0 chr6 76762499 76762637 -72754400 + B1_Mm SINE Alu 1 138 -9 4 1170 207 0 0 0 chr6 76762637 76762660 -72754377 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1170 325 292 36 11 chr6 76763304 76763412 -72753625 - PB1D10 SINE Alu -16 133 27 4 1170 766 286 22 0 chr6 76764707 76764892 -72752145 - B3 SINE B2 -12 204 16 4 1170 335 319 66 40 chr6 76765251 76765458 -72751579 - MER47B DNA MER2_type -53 365 88 4 1170 496 84 29 69 chr6 76765534 76765636 -72751401 - L1_Mus4 LINE L1 -3 6633 6536 4 1170 2357 156 5 2 chr6 76765636 76766042 -72750995 - L1_Mm LINE L1 -633 5250 4844 4 1170 390 304 95 24 chr6 76766533 76766786 -72750251 + L1M2 LINE L1 5519 5789 -508 4 1170 2448 68 79 35 chr6 76766872 76767266 -72749771 - IAPLTR2a LTR ERVK 0 411 1 4 1170 1065 89 0 7 chr6 76767371 76767518 -72749519 + B1_Mus1 SINE Alu 1 146 -2 4 1170 321 26 0 0 chr6 76767520 76767558 -72749479 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1170 494 291 90 112 chr6 76767582 76768047 -72748990 + RLTR12B LTR ERVK 42 496 -32 4 1170 434 297 70 57 chr6 76768079 76768236 -72748801 + B3A SINE B2 53 211 -5 4 1170 339 164 0 0 chr6 76768859 76768920 -72748117 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1170 619 376 65 0 chr6 76769315 76769578 -72747459 + B4 SINE B4 13 292 0 4 1170 188 135 27 0 chr6 76769863 76769900 -72747137 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1170 429 20 0 0 chr6 76771589 76771639 -72745398 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1170 530 294 68 7 chr6 76772107 76772254 -72744783 - RMER15 LTR ERVL -136 439 284 4 1170 327 294 14 191 chr6 76772243 76772453 -72744584 - RMER15 LTR ERVL -402 173 1 4 1170 381 342 17 94 chr6 76773658 76773898 -72743139 - B3A SINE B2 -1 215 4 4 1170 189 290 56 42 chr6 76774397 76774469 -72742568 + L2a LINE L2 3352 3424 -2 4 1170 600 301 159 22 chr6 76774837 76775186 -72741851 + RMER15 LTR ERVL 74 555 -20 4 1170 272 357 0 12 chr6 76776704 76776789 -72740248 + B4 SINE B4 5 88 -204 4 1170 1182 309 63 9 chr6 76777054 76777590 -72739447 - L1M2 LINE L1 -3313 2830 2266 4 1170 290 332 78 76 chr6 76777805 76778070 -72738967 - B4A SINE B4 -13 279 12 4 1170 412 286 168 32 chr6 76778626 76778908 -72738129 + RMER20B LTR ERVK 187 497 -130 4 1170 416 269 50 16 chr6 76779113 76779234 -72737803 - B1F1 SINE Alu -1 148 24 4 1170 273 171 79 0 chr6 76779646 76779722 -72737315 + Lx4A LINE L1 6974 7055 -3 4 1170 1097 288 68 12 chr6 76780549 76780908 -72736129 - MTE2b LTR MaLR 0 370 1 4 1170 1738 72 0 0 chr6 76781340 76781562 -72735475 - L1_Mus1 LINE L1 -1 6566 6345 4 1170 497 351 94 43 chr6 76781687 76781964 -72735073 - B4A SINE B4 0 292 2 4 1170 279 54 0 0 chr6 76782773 76782810 -72734227 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1170 1523 232 34 21 chr6 76783312 76783691 -72733346 + ORR1C2 LTR MaLR 1 384 0 4 1170 390 21 0 0 chr6 76784166 76784213 -72732824 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1170 2285 200 40 131 chr6 76784321 76784987 -72732050 - RMER19C LTR ERVK -5 606 1 4 1170 241 352 0 0 chr6 76785473 76785544 -72731493 + polypyrimidine Low_complexity Low_complexity 4 74 0 4 1170 522 57 0 0 chr6 76785597 76785667 -72731370 + (TG)n Simple_repeat Simple_repeat 2 71 0 4 1170 338 134 0 15 chr6 76786605 76786673 -72730364 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1170 448 278 62 0 chr6 76787143 76787240 -72729797 + RSINE1 SINE B4 14 116 -49 4 1170 591 84 0 0 chr6 76787643 76787738 -72729299 + (GA)n Simple_repeat Simple_repeat 1 95 0 4 1170 4375 210 16 33 chr6 76788047 76788500 -72728537 + L1_Mur3 LINE L1 2875 3314 -2566 4 1170 198 0 0 0 chr6 76788500 76788522 -72728515 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1170 811 99 141 0 chr6 76788522 76788643 -72728394 - B1_Mm SINE Alu -9 138 1 4 1170 4375 210 16 33 chr6 76788643 76789262 -72727775 + L1_Mur3 LINE L1 3315 3929 -1951 4 1170 2816 104 61 30 chr6 76789683 76790160 -72726877 - RMER16 LTR ERVK 0 533 1 4 1170 307 343 50 11 chr6 76790374 76790554 -72726483 + B3A SINE B2 1 187 -11 4 1170 592 340 8 32 chr6 76790921 76791170 -72725867 + MTD LTR MaLR 28 270 -149 4 1170 476 244 65 51 chr6 76791222 76791360 -72725677 + MTD LTR MaLR 276 415 -4 4 1170 1126 326 95 27 chr6 76791463 76791990 -72725047 - MER82 DNA MER2_type -10 643 81 4 1170 363 44 0 0 chr6 76792472 76792517 -72724520 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1170 1571 211 60 16 chr6 76793861 76794227 -72722810 - ORR1C2 LTR MaLR -2 382 1 4 1170 325 323 52 22 chr6 76794321 76794457 -72722580 + B4A SINE B4 1 140 -152 4 1170 818 243 34 38 chr6 76794811 76795046 -72721991 - Lx6 LINE L1 -4 7456 7223 4 1170 195 100 0 0 chr6 76795119 76795149 -72721888 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1170 447 360 146 73 chr6 76795205 76795451 -72721586 - B4 SINE B4 0 292 29 4 1170 393 81 0 0 chr6 76796078 76796140 -72720897 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1170 38535 6 3 1 chr6 76797132 76803113 -72713924 + L1Md_A LINE L1 1 5586 -297 4 1170 9006 3 0 0 chr6 76803113 76804109 -72712928 + L1Md_A LINE L1 5587 6582 0 4 1170 3420 191 129 101 chr6 76804409 76804563 -72712474 + RLTR25B LTR ERVK 1 140 -888 4 1170 333 0 0 0 chr6 76804563 76804600 -72712437 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1170 3420 191 129 101 chr6 76804600 76805445 -72711592 + RLTR25B LTR ERVK 141 1028 0 4 1170 790 108 17 0 chr6 76805450 76805570 -72711467 - B2_Mm2 SINE B2 0 195 74 4 1170 26 30 0 0 chr6 76807388 76807421 -72709616 + AT_rich Low_complexity Low_complexity 1 33 0 4 1170 272 257 43 61 chr6 76807575 76807700 -72709337 + ID_B1 SINE B4 20 139 -153 4 1170 381 117 0 0 chr6 76808128 76808188 -72708849 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 1171 207 100 0 0 chr6 76808254 76808284 -72708753 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1171 3358 54 2 5 chr6 76808443 76808872 -72708165 - L1Md_F3 LINE L1 -2 6582 6155 4 1171 531 45 0 0 chr6 76810147 76810213 -72706824 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 4 1171 426 69 0 0 chr6 76810273 76810331 -72706706 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1171 2000 169 70 30 chr6 76810348 76810720 -72706317 + ORR1B1 LTR MaLR 3 389 -5 4 1171 1299 253 63 33 chr6 76811324 76811721 -72705316 + MTD LTR MaLR 11 419 0 4 1171 556 289 72 64 chr6 76812683 76812934 -72704103 - MTEa LTR MaLR -4 375 123 4 1171 333 351 0 18 chr6 76813530 76813643 -72703394 + PB1D10 SINE Alu 4 114 -3 4 1171 446 185 15 15 chr6 76814227 76814359 -72702678 + (TA)n Simple_repeat Simple_repeat 2 133 0 4 1171 261 0 0 0 chr6 76814811 76814840 -72702197 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1171 360 64 0 0 chr6 76816149 76816196 -72700841 + (CATA)n Simple_repeat Simple_repeat 2 48 0 4 1171 327 292 82 20 chr6 76816216 76816412 -72700625 - L1MA6 LINE L1 -397 5903 5696 4 1171 235 213 0 0 chr6 76816620 76816667 -72700370 - L1M2 LINE L1 -940 5200 5154 4 1171 420 257 109 52 chr6 76816805 76817035 -72700002 - L1M2 LINE L1 -1155 4988 4746 4 1171 21 0 0 0 chr6 76817048 76817069 -72699968 + AT_rich Low_complexity Low_complexity 1 21 0 4 1171 441 0 0 0 chr6 76817069 76817118 -72699919 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1171 249 333 0 41 chr6 76817138 76817235 -72699802 - B3A SINE B2 -68 130 38 4 1171 1429 301 106 62 chr6 76817250 76818812 -72698225 - L1M2 LINE L1 -1396 4747 3116 4 1171 2959 73 25 19 chr6 76818812 76819243 -72697794 - L1_Mus2 LINE L1 -1 6565 6132 4 1171 4595 71 0 0 chr6 76819243 76819834 -72697203 - L1_Mm LINE L1 -271 5612 5022 4 1171 3535 75 37 6 chr6 76819834 76820320 -72696717 + L1Md_F2 LINE L1 6079 6579 -3 4 1171 3701 80 2 14 chr6 76820320 76820829 -72696208 - L1_Mus2 LINE L1 -391 6175 5673 5 1171 3053 89 2 0 chr6 76820838 76821242 -72695795 + L1_Mus2 LINE L1 5264 5668 -215 5 1171 416 308 106 36 chr6 76821237 76821813 -72695224 - L1M2 LINE L1 -2999 3144 2529 4 1171 225 0 0 0 chr6 76822218 76822243 -72694794 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1171 723 157 45 0 chr6 76822320 76822454 -72694583 + Lx2 LINE L1 6857 6996 -1 5 1171 200 128 26 0 chr6 76822457 76822496 -72694541 + A-rich Low_complexity Low_complexity 3 42 0 5 1171 1254 312 65 39 chr6 76822507 76824009 -72693028 - L1MA7 LINE L1 -429 5862 4263 5 1171 23 54 0 0 chr6 76824062 76824099 -72692938 + AT_rich Low_complexity Low_complexity 1 37 0 5 1171 228 259 66 41 chr6 76824344 76824465 -72692572 - L1MC LINE L1 -2406 3740 3617 5 1171 290 320 84 28 chr6 76824483 76825020 -72692017 - L1_Mur1 LINE L1 -3638 2209 1624 5 1171 462 302 50 0 chr6 76825089 76825208 -72691829 + RSINE1 SINE B4 3 127 -38 5 1171 258 81 0 0 chr6 76825208 76825245 -72691792 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1171 290 261 0 0 chr6 76825347 76825412 -72691625 - L1MA7 LINE L1 -2287 3853 3789 5 1171 236 242 138 50 chr6 76825942 76826160 -72690877 - L1MA7 LINE L1 -2545 3595 3359 5 1171 234 267 17 0 chr6 76826351 76826411 -72690626 + GA-rich Low_complexity Low_complexity 1 61 0 5 1171 1157 304 93 27 chr6 76826411 76826854 -72690183 - MLT2B1 LTR ERVL -48 472 1 5 1171 898 164 28 60 chr6 76827053 76827235 -72689802 - Lx3B LINE L1 0 6973 6798 5 1171 641 284 142 40 chr6 76827238 76827807 -72689230 - L1MA7 LINE L1 -3210 2930 2304 5 1171 234 116 0 0 chr6 76828758 76828801 -72688236 + (TTG)n Simple_repeat Simple_repeat 2 44 0 5 1171 552 287 64 39 chr6 76829019 76829175 -72687862 + B3A SINE B2 15 174 -24 5 1171 4688 37 2 0 chr6 76829283 76829844 -72687193 - L1Md_F2 LINE L1 0 6582 6021 5 1171 401 255 0 54 chr6 76833665 76833777 -72683260 + B1_Mur1 SINE Alu 43 148 -1 5 1171 21 0 0 0 chr6 76833838 76833859 -72683178 + AT_rich Low_complexity Low_complexity 1 21 0 5 1171 24 53 0 0 chr6 76835027 76835065 -72681972 + AT_rich Low_complexity Low_complexity 1 38 0 5 1171 205 355 75 34 chr6 76836193 76836339 -72680698 - MIRb SINE MIR 0 268 117 5 1171 189 0 0 0 chr6 76837455 76837476 -72679561 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1171 222 128 0 0 chr6 76838369 76838408 -72678629 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1171 23 33 0 0 chr6 76838513 76838543 -72678494 + AT_rich Low_complexity Low_complexity 1 30 0 5 1171 360 64 0 0 chr6 76838960 76839007 -72678030 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1171 342 0 0 0 chr6 76839014 76839052 -72677985 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1171 25 0 0 0 chr6 76841563 76841588 -72675449 + AT_rich Low_complexity Low_complexity 1 25 0 5 1171 595 314 81 0 chr6 76841840 76842025 -72675012 + Tigger7 DNA MER2_type 9 208 -2283 5 1171 441 207 12 0 chr6 76843827 76843909 -72673128 + RLTR26 LTR ERVK 531 613 -29 5 1171 521 79 0 0 chr6 76844914 76844990 -72672047 - L1_Mm LINE L1 -4435 1448 1373 5 1171 305 245 116 91 chr6 76845589 76845710 -72671327 + MER20 DNA MER1_type 69 192 -27 5 1171 401 158 12 0 chr6 76847695 76847777 -72669260 + (TA)n Simple_repeat Simple_repeat 1 83 0 5 1171 689 319 47 19 chr6 76850949 76851163 -72665874 + ID_B1 SINE B4 3 222 -2 5 1171 207 100 0 0 chr6 76851347 76851377 -72665660 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 5 1171 23 33 0 0 chr6 76851913 76851943 -72665094 + AT_rich Low_complexity Low_complexity 1 30 0 5 1171 204 213 21 0 chr6 76852433 76852480 -72664557 + GA-rich Low_complexity Low_complexity 1 48 0 5 1171 623 239 21 83 chr6 76853546 76853738 -72663299 + URR1A DNA MER1_type 47 226 0 5 1171 336 279 28 28 chr6 76856929 76857036 -72660001 - BC1_Mm scRNA scRNA -45 107 1 5 1171 886 306 42 45 chr6 76857490 76857870 -72659167 + MTE2b LTR MaLR 1 379 0 5 1171 672 278 52 9 chr6 76858146 76858336 -72658701 + ORR1E LTR MaLR 1 192 -186 5 1171 277 203 34 0 chr6 76858350 76858409 -72658628 + ORR1E LTR MaLR 286 346 -13 5 1171 1001 46 75 15 chr6 76859353 76859486 -72657551 - B1_Mm SINE Alu -5 142 2 5 1171 747 62 0 0 chr6 76859516 76859613 -72657424 + (TA)n Simple_repeat Simple_repeat 1 97 0 5 1171 377 81 0 16 chr6 76859722 76859785 -72657252 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 1171 365 262 12 156 chr6 76859960 76860127 -72656910 + RSINE1 SINE B4 4 146 -19 5 1171 798 238 183 78 chr6 76860165 76860728 -72656309 + Lx8 LINE L1 6802 7423 -50 5 1171 495 0 0 0 chr6 76860728 76860783 -72656254 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 5 1171 593 236 180 0 chr6 76860788 76860966 -72656071 + B3 SINE B2 2 211 -5 5 1171 191 32 65 0 chr6 76860989 76861020 -72656017 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 5 1171 675 86 9 9 chr6 76861020 76861126 -72655911 - B1_Mm SINE Alu 0 147 42 5 1171 314 0 0 161 chr6 76861129 76861291 -72655746 + (CTCTG)n Simple_repeat Simple_repeat 5 140 0 5 1171 314 169 0 63 chr6 76861292 76861355 -72655682 - B1_Mur4 SINE Alu -90 60 2 5 1171 792 191 7 13 chr6 76861369 76861518 -72655519 - B1_Mur4 SINE Alu -2 148 1 5 1171 1557 277 8 10 chr6 76861700 76862083 -72654954 + Lx6 LINE L1 7019 7400 -60 5 1171 288 207 0 101 chr6 76862085 76862214 -72654823 + GA-rich Low_complexity Low_complexity 2 117 0 5 1171 836 321 24 31 chr6 76862310 76862599 -72654438 + B4 SINE B4 2 288 -4 5 1171 720 300 77 16 chr6 76866038 76866285 -72650752 + Lx8 LINE L1 7070 7331 -142 5 1171 309 51 0 0 chr6 76867291 76867330 -72649707 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 5 1171 666 194 151 6 chr6 76869460 76869626 -72647411 + MTD LTR MaLR 6 195 -224 5 1171 670 294 11 21 chr6 76870331 76870522 -72646515 - MTE2a LTR MaLR -133 246 58 5 1171 334 311 0 11 chr6 76870531 76870622 -72646415 - MTE2a LTR MaLR -286 93 4 5 1171 1122 68 0 13 chr6 76871605 76871754 -72645283 - B1_Mm SINE Alu 0 147 1 5 1171 6344 80 5 1 chr6 76871987 76872816 -72644221 - L1_Mus1 LINE L1 0 6567 5736 5 1171 3085 101 0 2 chr6 76872812 76873230 -72643807 + L1_Mus1 LINE L1 5363 5779 -104 5 1171 338 201 9 0 chr6 76873366 76873440 -72643597 + B3 SINE B2 93 169 -47 5 1171 1836 202 62 21 chr6 76873691 76874080 -72642957 - Lx5 LINE L1 -4 7046 6642 5 1171 5629 169 15 13 chr6 76874079 76875162 -72641875 + Lx5 LINE L1 5533 6630 -420 5 1171 859 276 129 54 chr6 76875766 76876313 -72640724 + L1MB3 LINE L1 4576 5170 -976 5 1171 225 65 0 0 chr6 76876313 76876344 -72640693 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1171 965 287 115 58 chr6 76876344 76877289 -72639748 + L1MB3 LINE L1 5171 6163 -20 5 1171 546 16 0 0 chr6 76878081 76878144 -72638893 + (GGAAA)n Simple_repeat Simple_repeat 3 65 0 5 1171 944 41 0 8 chr6 76878145 76878267 -72638770 + (GGAGA)n Simple_repeat Simple_repeat 4 124 0 5 1171 348 333 17 91 chr6 76878284 76878437 -72638600 + RSINE1 SINE B4 4 144 -21 5 1171 513 0 0 0 chr6 76878437 76878494 -72638543 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1171 348 333 17 91 chr6 76878494 76878515 -72638522 + RSINE1 SINE B4 145 165 0 5 1171 303 122 0 0 chr6 76879853 76879902 -72637135 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1171 327 253 67 0 chr6 76880043 76880118 -72636919 + L1MEg LINE L1 1892 1971 -4113 5 1171 213 308 0 0 chr6 76880922 76880974 -72636063 + (TATG)n Simple_repeat Simple_repeat 4 55 0 5 1171 243 367 0 70 chr6 76881104 76881233 -72635804 + B4A SINE B4 1 120 -172 5 1171 353 75 0 19 chr6 76881401 76881455 -72635582 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1171 1371 318 92 15 chr6 76883418 76884003 -72633034 - MER82 DNA MER2_type -20 633 4 5 1171 728 328 15 123 chr6 76884292 76884682 -72632355 + MTD LTR MaLR 22 369 -50 5 1171 575 222 34 0 chr6 76885886 76886003 -72631034 - B1_Mur4 SINE Alu 0 150 30 5 1171 697 306 43 14 chr6 76886032 76886241 -72630796 - B3 SINE B2 0 216 2 5 1171 376 308 179 23 chr6 76887716 76887966 -72629071 + MTE2b LTR MaLR 91 379 0 5 1171 565 212 219 0 chr6 76888210 76888356 -72628681 + B3 SINE B2 1 178 -38 5 1171 314 396 6 70 chr6 76888499 76888670 -72628367 + B4A SINE B4 5 164 -128 5 1171 200 347 68 20 chr6 76889918 76890065 -72626972 - MIR SINE MIR -14 248 95 5 1171 243 283 19 0 chr6 76890147 76890200 -72626837 - ID4_ SINE ID -28 55 2 5 1171 25 83 0 0 chr6 76890655 76890715 -72626322 + AT_rich Low_complexity Low_complexity 1 60 0 5 1171 807 309 66 14 chr6 76890717 76891262 -72625775 - L1MA4 LINE L1 -383 5917 5305 5 1171 1492 60 0 29 chr6 76892672 76892877 -72624160 - L1_Mus2 LINE L1 -1 6565 6367 5 1171 212 318 0 0 chr6 76893084 76893147 -72623890 + MIRc SINE MIR 85 147 -121 5 1171 387 98 0 0 chr6 76893167 76893228 -72623809 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1171 499 218 164 0 chr6 76893354 76893464 -72623573 - B1_Mur2 SINE Alu -21 128 1 5 1171 882 87 0 0 chr6 76894948 76895086 -72621951 + (GA)n Simple_repeat Simple_repeat 1 138 0 5 1171 423 0 0 0 chr6 76895105 76895152 -72621885 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 5 1171 1764 296 62 14 chr6 76895258 76895885 -72621152 + Lx8 LINE L1 6651 7307 -166 5 1171 592 325 0 47 chr6 76896073 76896244 -72620793 + B4A SINE B4 83 245 -47 5 1171 263 232 12 0 chr6 76896279 76896361 -72620676 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1171 274 339 91 76 chr6 76896377 76896575 -72620462 + MIRc SINE MIR 49 249 -19 5 1171 683 287 84 54 chr6 76896821 76897120 -72619917 + MTE2a LTR MaLR 74 419 -2 5 1171 224 372 30 60 chr6 76898123 76898289 -72618748 + L2 LINE L2 2710 2870 -549 5 1171 288 0 0 0 chr6 76899622 76899654 -72617383 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1171 763 176 7 44 chr6 76899657 76899794 -72617243 - B1_Mur4 SINE Alu -14 136 5 5 1171 728 323 107 84 chr6 76899824 76900301 -72616736 - MER82 DNA MER2_type -3 650 163 5 1171 252 0 0 0 chr6 76900307 76900335 -72616702 + (TTATA)n Simple_repeat Simple_repeat 2 29 0 5 1171 42 20 0 0 chr6 76900338 76900387 -72616650 + AT_rich Low_complexity Low_complexity 1 49 0 6 1171 1372 18 0 17 chr6 76900925 76900971 -72616066 + (TTC)n Simple_repeat Simple_repeat 3 48 0 6 1171 1128 72 0 22 chr6 76900971 76901155 -72615882 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1171 1372 18 0 17 chr6 76901155 76901224 -72615813 + (TTC)n Simple_repeat Simple_repeat 1 68 0 6 1171 1276 56 6 6 chr6 76901224 76901403 -72615634 + (TCC)n Simple_repeat Simple_repeat 2 180 0 6 1171 1372 18 0 17 chr6 76901403 76901459 -72615578 + (TTC)n Simple_repeat Simple_repeat 2 57 0 6 1171 615 51 0 0 chr6 76902105 76902184 -72614853 + (TC)n Simple_repeat Simple_repeat 1 79 0 6 1171 203 263 0 34 chr6 76902184 76902243 -72614794 + CT-rich Low_complexity Low_complexity 2 58 0 6 1171 487 270 141 36 chr6 76902805 76902997 -72614040 - B3 SINE B2 -3 213 2 6 1171 734 132 0 50 chr6 76903772 76903932 -72613105 + Lx3A LINE L1 6829 6980 -1 6 1171 2106 148 53 81 chr6 76903972 76904099 -72612938 + Lx LINE L1 6173 6314 -340 6 1171 618 51 0 0 chr6 76904099 76904177 -72612860 + (TGG)n Simple_repeat Simple_repeat 1 78 0 6 1171 2106 148 53 81 chr6 76904177 76904542 -72612495 + Lx LINE L1 6315 6650 -4 6 1171 275 192 13 0 chr6 76905571 76905649 -72611388 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1171 183 80 0 0 chr6 76906043 76906068 -72610969 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1171 450 231 8 0 chr6 76906284 76906401 -72610636 + L1MA6 LINE L1 6183 6300 0 6 1171 585 341 0 15 chr6 76906748 76906885 -72610152 + RSINE1 SINE B4 14 148 -17 6 1171 22 35 0 0 chr6 76908128 76908157 -72608880 + AT_rich Low_complexity Low_complexity 1 29 0 6 1171 382 162 9 57 chr6 76908200 76908305 -72608732 - Lx9 LINE L1 -26 7618 7519 6 1171 808 67 6 63 chr6 76908345 76908504 -72608533 + (GA)n Simple_repeat Simple_repeat 1 150 0 6 1171 807 225 60 60 chr6 76908533 76908798 -72608239 + Lx9 LINE L1 7184 7448 -196 6 1171 370 369 98 8 chr6 76912247 76912482 -72604555 + MLT1F LTR MaLR 1 256 -304 6 1171 1507 256 56 3 chr6 76912483 76912843 -72604194 + MTD LTR MaLR 5 383 -36 6 1171 379 282 60 43 chr6 76912962 76913147 -72603890 + MLT1F LTR MaLR 358 545 -3 6 1171 303 49 0 0 chr6 76913209 76913250 -72603787 + (TTG)n Simple_repeat Simple_repeat 2 42 0 6 1171 455 262 14 71 chr6 76913433 76913573 -72603464 + B3A SINE B2 67 198 0 6 1171 219 219 0 0 chr6 76913642 76913683 -72603354 + PB1 SINE Alu 44 84 -43 6 1171 581 231 21 63 chr6 76914553 76914696 -72602341 + B1_Mur1 SINE Alu 12 148 -1 6 1171 198 128 0 0 chr6 76914758 76914797 -72602240 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 6 1171 524 195 0 17 chr6 76914797 76914917 -72602120 + CT-rich Low_complexity Low_complexity 1 118 0 6 1171 483 33 0 0 chr6 76916639 76916700 -72600337 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1171 592 370 10 15 chr6 76917345 76917551 -72599486 + B3 SINE B2 1 205 -11 6 1171 306 279 38 12 chr6 76917632 76917712 -72599325 + RSINE1 SINE B4 67 148 -17 6 1171 325 133 27 0 chr6 76918398 76918473 -72598564 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 6 1171 215 205 0 0 chr6 76919231 76919270 -72597767 + CT-rich Low_complexity Low_complexity 3 41 0 6 1171 240 290 40 10 chr6 76919436 76919537 -72597500 + BC1_Mm scRNA scRNA 14 117 -35 6 1171 206 164 18 0 chr6 76919559 76919614 -72597423 + CT-rich Low_complexity Low_complexity 1 56 0 6 1171 1555 120 19 241 chr6 76920682 76921209 -72595828 - RMER17C LTR ERVK 0 410 1 6 1171 252 0 0 0 chr6 76921353 76921381 -72595656 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 6 1171 321 26 0 0 chr6 76921507 76921545 -72595492 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1171 360 0 0 0 chr6 76921545 76921584 -72595453 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1171 1346 187 87 12 chr6 76921589 76921935 -72595102 + L1_Rod LINE L1 501 872 -6300 6 1171 501 235 28 35 chr6 76921935 76922076 -72594961 + MTE2b LTR MaLR 240 379 0 6 1171 810 204 0 7 chr6 76922357 76922500 -72594537 - B1_Mus2 SINE Alu 0 147 6 6 1171 306 0 0 0 chr6 76922894 76922928 -72594109 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1171 962 264 71 49 chr6 76924149 76924556 -72592481 + MTD LTR MaLR 2 417 -2 6 1171 311 127 16 0 chr6 76924636 76924699 -72592338 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 6 1171 26 30 0 0 chr6 76924832 76924865 -72592172 + AT_rich Low_complexity Low_complexity 1 33 0 6 1171 559 209 82 37 chr6 76925045 76925179 -72591858 - RSINE1 SINE B4 -23 142 3 6 1171 533 269 14 14 chr6 76926094 76926241 -72590796 - B1_Mur2 SINE Alu 0 149 3 6 1171 209 232 14 0 chr6 76927556 76927625 -72589412 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 6 1171 222 221 0 85 chr6 76927629 76927723 -72589314 + (TATG)n Simple_repeat Simple_repeat 4 89 0 6 1171 206 77 0 49 chr6 76928501 76928542 -72588495 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1171 602 323 132 25 chr6 76929925 76930290 -72586747 - MTC LTR MaLR 0 421 18 6 1171 556 285 133 30 chr6 76931363 76931627 -72585410 + B4A SINE B4 1 291 -1 6 1171 443 130 0 13 chr6 76931656 76931734 -72585303 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 1171 182 330 41 71 chr6 76933331 76933429 -72583608 - MIR3 SINE MIR -110 98 4 6 1171 581 304 42 47 chr6 76933488 76933681 -72583356 - B3A SINE B2 -19 197 6 6 1171 1815 254 65 8 chr6 76934130 76934607 -72582430 - RMER20A LTR ERVK 0 516 13 6 1171 461 263 0 0 chr6 76934899 76934994 -72582043 + MTE2b LTR MaLR 4 98 -281 6 1171 1106 287 24 63 chr6 76934994 76935329 -72581708 + MTE2b LTR MaLR 58 379 0 6 1171 3642 67 0 45 chr6 76935411 76935925 -72581112 + L1_Mus2 LINE L1 6076 6566 0 6 1171 517 333 21 68 chr6 76936314 76936504 -72580533 + B3A SINE B2 1 181 -17 6 1171 238 307 98 38 chr6 76936605 76936737 -72580300 - RLTR22_Mur LTR ERVK -402 1446 1307 6 1171 239 359 9 54 chr6 76936637 76936749 -72580288 + RMER12 LTR ERVK 739 845 -477 6 1171 976 181 111 0 chr6 76937603 76937802 -72579235 + URR1B DNA MER1_type 5 225 0 6 1171 295 309 119 94 chr6 76938528 76938809 -72578228 + B4A SINE B4 1 291 -1 6 1172 542 332 40 50 chr6 76939277 76939477 -72577560 + B3A SINE B2 1 198 0 6 1172 417 296 27 14 chr6 76940149 76940296 -72576741 + Lx8 LINE L1 7163 7311 -162 6 1172 512 228 100 7 chr6 76940403 76940553 -72576484 - MER2 DNA MER2_type -61 284 121 6 1172 541 262 168 29 chr6 76940570 76940743 -72576294 + B3 SINE B2 9 205 -11 6 1172 652 305 16 5 chr6 76940920 76941111 -72575926 + B3A SINE B2 2 194 -4 6 1172 21 36 0 0 chr6 76941245 76941273 -72575764 + AT_rich Low_complexity Low_complexity 1 28 0 6 1172 928 220 21 64 chr6 76941671 76941904 -72575133 + URR1B DNA MER1_type 1 223 -2 6 1172 21 0 0 0 chr6 76943471 76943492 -72573545 + GC_rich Low_complexity Low_complexity 1 21 0 6 1172 1208 259 117 20 chr6 76943592 76943804 -72573233 - RLTR12A LTR ERVK -23 505 272 6 1172 684 0 0 0 chr6 76943804 76943880 -72573157 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1172 1236 181 32 16 chr6 76943880 76944127 -72572910 - RLTR12A LTR ERVK -317 251 1 6 1172 519 260 26 89 chr6 76944300 76944490 -72572547 + MER58A DNA MER1_type 47 224 0 6 1172 646 306 32 14 chr6 76944637 76944919 -72572118 + B4A SINE B4 1 287 -5 6 1172 977 323 23 0 chr6 76948020 76948280 -72568757 + B4A SINE B4 2 267 -25 6 1172 390 21 0 0 chr6 76948282 76948329 -72568708 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1172 333 0 0 0 chr6 76948329 76948365 -72568672 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1172 267 257 250 27 chr6 76949167 76949279 -72567758 - MER5B DNA MER1_type -38 140 4 6 1172 189 0 53 53 chr6 76949375 76949413 -72567624 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 6 1172 567 312 19 34 chr6 76949800 76950006 -72567031 + RMER15 LTR ERVL 352 554 -21 6 1172 333 123 0 0 chr6 76950748 76950813 -72566224 + (T)n Simple_repeat Simple_repeat 1 65 0 6 1172 345 259 87 25 chr6 76950953 76951102 -72565935 - MIRc SINE MIR -27 235 84 6 1172 283 307 105 97 chr6 76951126 76951364 -72565673 + B4A SINE B4 2 241 -51 6 1172 255 295 44 84 chr6 76951632 76951824 -72565213 - MIRb SINE MIR -72 196 7 6 1172 301 323 14 114 chr6 76951917 76952057 -72564980 + ID_B1 SINE B4 92 217 -7 6 1172 1587 142 15 15 chr6 76952059 76952323 -72564714 + ORR1A4 LTR MaLR 62 325 -4 6 1172 380 20 0 20 chr6 76952363 76952413 -72564624 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 6 1172 685 314 3 26 chr6 76952970 76953190 -72563847 - B3A SINE B2 -3 213 1 6 1172 201 39 0 0 chr6 76953296 76953322 -72563715 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1172 4767 238 51 46 chr6 76955256 76956656 -72560381 - Lx7 LINE L1 -148 7548 6141 6 1172 566 290 136 0 chr6 76956671 76956847 -72560190 - B3 SINE B2 -14 202 3 6 1172 296 304 59 0 chr6 76957292 76957394 -72559643 + ID_B1 SINE B4 116 223 -1 6 1172 349 358 56 49 chr6 76957917 76958205 -72558832 - MLT1D LTR MaLR -136 369 80 6 1172 432 0 0 0 chr6 76958226 76958274 -72558763 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1172 1210 277 59 22 chr6 76958629 76958984 -72558053 - ORR1D2 LTR MaLR 0 370 3 6 1172 336 48 0 0 chr6 76959273 76959315 -72557722 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1172 722 269 100 73 chr6 76959317 76959534 -72557503 - MT2A LTR ERVL -69 464 215 6 1172 194 0 39 0 chr6 76959534 76959560 -72557477 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 1172 722 239 105 112 chr6 76959560 76959747 -72557290 - MT2A LTR ERVL -319 214 1 6 1172 477 0 0 0 chr6 76960280 76960333 -72556704 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1172 22 0 0 0 chr6 76960922 76960944 -72556093 + AT_rich Low_complexity Low_complexity 1 22 0 7 1172 745 95 23 16 chr6 76961548 76961676 -72555361 + (GGGAGA)n Simple_repeat Simple_repeat 6 134 0 7 1172 763 280 46 36 chr6 76961710 76961906 -72555131 + B4A SINE B4 95 292 0 7 1172 576 215 87 22 chr6 76962763 76962901 -72554136 + B1_Mur2 SINE Alu 1 147 -2 7 1172 396 0 0 0 chr6 76963487 76963531 -72553506 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1172 1441 60 22 0 chr6 76963595 76963777 -72553260 - B2_Mm2 SINE B2 -9 186 1 7 1172 545 281 57 46 chr6 76965681 76965875 -72551162 - B3A SINE B2 0 198 3 7 1172 425 50 17 0 chr6 76965978 76966038 -72550999 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1172 225 0 0 0 chr6 76966038 76966062 -72550975 + (GA)n Simple_repeat Simple_repeat 2 26 0 7 1172 716 55 18 0 chr6 76966343 76966453 -72550584 - L1Md_T LINE L1 0 6582 6471 7 1172 246 32 0 0 chr6 76966490 76966521 -72550516 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1172 279 236 144 11 chr6 76966530 76966620 -72550417 + MER106A DNA MER1_type 90 191 -45 7 1172 783 199 7 7 chr6 76966657 76966804 -72550233 - B1_Mur4 SINE Alu -2 148 2 7 1172 585 42 0 0 chr6 76967458 76967530 -72549507 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1172 7374 92 11 4 chr6 76969164 76970716 -72546321 + L1_Mus3 LINE L1 5070 6630 -8 7 1172 621 268 27 184 chr6 76971440 76971701 -72545336 - MTE2b LTR MaLR -158 221 2 7 1172 480 35 0 0 chr6 76971828 76971886 -72545151 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 1172 28 0 0 0 chr6 76971933 76971961 -72545076 + AT_rich Low_complexity Low_complexity 1 28 0 7 1172 211 271 151 12 chr6 76971973 76972059 -72544978 + MIRc SINE MIR 170 267 -1 7 1172 216 0 0 0 chr6 76973343 76973367 -72543670 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1172 518 279 110 37 chr6 76974148 76974312 -72542725 + B3A SINE B2 1 176 -22 7 1172 333 0 0 0 chr6 76974314 76974351 -72542686 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1172 288 0 0 0 chr6 76974351 76974382 -72542655 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1172 430 321 12 18 chr6 76974395 76974560 -72542477 - HAL1-2a_MD LINE L1 -515 2509 2346 7 1172 211 276 90 45 chr6 76974615 76974748 -72542289 - MIR SINE MIR -57 205 67 7 1172 1015 286 57 15 chr6 76975138 76975472 -72541565 - Lx8 LINE L1 -181 7292 6945 7 1172 667 293 6 11 chr6 76976604 76976780 -72540257 - MTD LTR MaLR -15 404 230 7 1172 240 35 0 0 chr6 76976870 76976899 -72540138 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 1172 468 51 0 0 chr6 76976951 76977010 -72540027 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 1172 374 359 85 25 chr6 76977762 76977979 -72539058 - MTD LTR MaLR -173 223 17 7 1172 318 237 0 0 chr6 76979037 76979155 -72537882 + (TG)n Simple_repeat Simple_repeat 1 118 0 7 1172 335 309 153 86 chr6 76979251 76979506 -72537531 - B4 SINE B4 -11 281 10 7 1172 341 336 15 0 chr6 76981562 76981696 -72535341 + (TGGA)n Simple_repeat Simple_repeat 4 139 0 7 1172 246 32 0 0 chr6 76982888 76982919 -72534118 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 7 1172 360 0 0 0 chr6 76983016 76983056 -72533981 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1172 243 0 0 0 chr6 76983056 76983082 -72533955 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 1172 526 335 65 37 chr6 76983282 76983496 -72533541 + B4A SINE B4 69 288 -4 7 1172 825 260 129 32 chr6 76984219 76984592 -72532445 + Lx9 LINE L1 7054 7462 -182 7 1172 226 344 61 20 chr6 76984748 76984846 -72532191 + PB1D9 SINE Alu 9 110 -10 7 1172 388 323 38 23 chr6 76985241 76985374 -72531663 + ID_B1 SINE B4 88 222 -2 7 1172 653 223 40 7 chr6 76985724 76985873 -72531164 + ID_B1 SINE B4 3 156 -68 7 1172 801 290 94 59 chr6 76985986 76986174 -72530863 + Lx8 LINE L1 7018 7214 -259 7 1172 405 0 0 0 chr6 76986174 76986219 -72530818 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 1172 801 290 94 59 chr6 76986219 76986455 -72530582 + Lx8 LINE L1 7215 7456 -17 7 1172 271 261 0 0 chr6 76987941 76988006 -72529031 - ID4_ SINE ID -18 65 1 7 1172 432 296 24 36 chr6 76988087 76988252 -72528785 + LTR37A LTR ERV1 262 424 -2 7 1172 306 321 76 8 chr6 76988278 76988410 -72528627 - L3 LINE CR1 -211 4278 4138 7 1172 798 281 125 37 chr6 76988966 76989287 -72527750 - ORR1E LTR MaLR -10 349 1 7 1172 3099 169 88 47 chr6 76989287 76989694 -72527343 + Lx4B LINE L1 6315 6760 -298 7 1172 387 0 0 0 chr6 76989694 76989737 -72527300 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1172 3099 183 95 48 chr6 76989737 76990060 -72526977 + Lx4B LINE L1 6761 7026 -32 7 1172 536 349 61 15 chr6 76991040 76991302 -72525735 - B4A SINE B4 -18 274 1 7 1172 693 170 21 0 chr6 76991509 76991650 -72525387 - Lx6 LINE L1 -4 7456 7313 7 1172 414 326 60 20 chr6 76991803 76991953 -72525084 - RSINE1 SINE B4 -4 161 6 7 1172 486 288 64 25 chr6 76992226 76992383 -72524654 - RMER30 DNA MER1_type -1 201 39 7 1172 533 313 61 0 chr6 76993248 76993446 -72523591 - ID_B1 SINE B4 -10 214 5 7 1172 3252 60 0 7 chr6 76994977 76995383 -72521654 + L1_Mus1 LINE L1 6164 6566 -1 7 1172 201 154 0 0 chr6 76995389 76995428 -72521609 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1172 324 364 77 36 chr6 76995846 76996014 -72521023 + B4 SINE B4 5 179 -113 7 1172 377 20 0 20 chr6 76996089 76996140 -72520897 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1172 307 292 74 44 chr6 76996306 76996535 -72520502 + L1MC4a LINE L1 7633 7868 -14 7 1172 220 258 28 139 chr6 76996957 76997065 -72519972 + L2a LINE L2 3292 3426 0 7 1172 414 0 0 0 chr6 76997283 76997329 -72519708 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1172 21 57 0 0 chr6 76998200 76998235 -72518802 + AT_rich Low_complexity Low_complexity 1 35 0 7 1172 429 318 0 27 chr6 76998275 76998385 -72518652 + PB1D10 SINE Alu 2 108 -9 7 1172 239 325 86 81 chr6 76998429 76998650 -72518387 + Lx8 LINE L1 6102 6323 -1150 7 1172 523 264 33 0 chr6 76999570 76999691 -72517346 + RSINE1 SINE B4 12 136 -29 7 1172 597 321 106 10 chr6 76999698 77000000 -72517037 + RMER5 LTR ERV1 185 515 -19 7 1172 838 255 70 5 chr6 77000664 77000865 -72516172 + MER58A DNA MER1_type 7 220 -4 1 1172 527 291 37 0 chr6 77001043 77001177 -72515860 + RSINE1 SINE B4 11 149 -16 2 1172 816 40 0 0 chr6 77001183 77001283 -72515754 + (GA)n Simple_repeat Simple_repeat 1 100 0 3 1172 512 56 0 14 chr6 77001283 77001356 -72515681 + (GGA)n Simple_repeat Simple_repeat 3 74 0 4 1172 4179 37 6 8 chr6 77001473 77001986 -72515051 - L1Md_F3 LINE L1 0 6584 6073 5 1172 1272 13 0 13 chr6 77001986 77002144 -72514893 + L1Md_F3 LINE L1 5642 5797 -787 6 1172 5877 46 0 0 chr6 77002139 77003068 -72513969 - L1Md_F2 LINE L1 -531 6051 5123 5 1172 3998 57 2 0 chr6 77003069 77003562 -72513475 + L1Md_F2 LINE L1 6077 6570 -12 5 1172 23 50 0 48 chr6 77003635 77003698 -72513339 + AT_rich Low_complexity Low_complexity 1 60 0 7 1172 2571 31 0 0 chr6 77003702 77004021 -72513016 + L1Md_F3 LINE L1 5783 6101 -483 8 1172 236 255 20 0 chr6 77004031 77004082 -72512955 + ID4 SINE ID 32 83 0 9 1172 263 345 109 60 chr6 77004307 77004576 -72512461 - B4A SINE B4 -12 280 1 1 1172 275 286 31 3 chr6 77004687 77004760 -72512277 + MTE2a LTR MaLR 45 117 -262 1 1172 597 324 133 7 chr6 77004764 77005066 -72511971 + MTE2b LTR MaLR 40 379 0 1 1172 354 143 0 0 chr6 77005657 77005720 -72511317 + (TCCC)n Simple_repeat Simple_repeat 2 64 0 1 1172 806 214 166 23 chr6 77006090 77006392 -72510645 + Lx9 LINE L1 7292 7636 -8 1 1172 186 209 0 0 chr6 77007693 77007736 -72509301 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1172 215 122 0 20 chr6 77008061 77008111 -72508926 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1172 501 309 39 42 chr6 77008125 77008338 -72508699 + B3A SINE B2 1 216 0 1 1172 196 154 39 0 chr6 77008493 77008545 -72508492 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1172 22 0 0 0 chr6 77009932 77009954 -72507083 + AT_rich Low_complexity Low_complexity 1 22 0 1 1172 255 323 42 31 chr6 77009961 77010057 -72506980 + B1F SINE Alu 15 111 -38 2 1172 614 222 175 15 chr6 77011323 77011529 -72505508 + Lx4B LINE L1 6760 7051 -7 2 1172 506 357 44 0 chr6 77011756 77011938 -72505099 + B4A SINE B4 5 194 -98 2 1172 400 212 15 0 chr6 77012614 77012746 -72504291 + CT-rich Low_complexity Low_complexity 1 134 0 2 1172 447 361 67 10 chr6 77012891 77013084 -72503953 - MLT1A0 LTR MaLR -151 214 11 2 1172 455 257 38 0 chr6 77013098 77013203 -72503834 + RSINE1 SINE B4 3 111 -54 2 1172 557 288 8 0 chr6 77013226 77013351 -72503686 - RSINE1 SINE B4 -37 128 3 2 1172 31 0 0 0 chr6 77013833 77013864 -72503173 + AT_rich Low_complexity Low_complexity 1 31 0 2 1172 1399 315 179 12 chr6 77013947 77014786 -72502251 + Lx8 LINE L1 6448 7426 -47 2 1172 27 29 0 0 chr6 77015572 77015606 -72501431 + AT_rich Low_complexity Low_complexity 1 34 0 2 1172 1185 298 60 5 chr6 77016243 77016675 -72500362 - Lx9 LINE L1 -636 7008 6553 3 1172 230 352 61 20 chr6 77016729 77016926 -72500111 + Lx9 LINE L1 7245 7449 -195 3 1172 214 363 28 38 chr6 77017212 77017318 -72499719 + MIR SINE MIR 17 121 -141 3 1172 398 230 89 10 chr6 77017413 77017514 -72499523 + MTD LTR MaLR 18 126 -293 3 1172 803 274 29 5 chr6 77017525 77017734 -72499303 + MTD LTR MaLR 188 401 -18 3 1172 1006 306 78 16 chr6 77018232 77018683 -72498354 - MER31A LTR ERV1 -1 484 6 3 1172 284 356 21 56 chr6 77018777 77018920 -72498117 + MER5A DNA MER1_type 7 144 -45 3 1172 502 320 13 0 chr6 77018944 77019094 -72497943 - B3A SINE B2 -44 154 3 3 1172 261 57 0 0 chr6 77019363 77019398 -72497639 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1172 606 28 0 0 chr6 77020092 77020164 -72496873 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 3 1172 337 301 61 42 chr6 77020981 77021003 -72496034 + B4 SINE B4 75 217 -75 3 1172 801 78 103 0 chr6 77021003 77021119 -72495918 + B1_Mus1 SINE Alu 12 139 -9 4 1172 243 0 0 0 chr6 77021119 77021146 -72495891 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1172 337 301 61 42 chr6 77021146 77021219 -72495818 + B4 SINE B4 218 289 -3 3 1172 3410 28 5 0 chr6 77021634 77022028 -72495009 - MTA_Mm LTR MaLR 0 396 1 4 1172 9103 35 3 2 chr6 77022028 77023125 -72493912 - MTA_Mm-int LTR MaLR 0 1098 1 4 1172 3293 28 0 0 chr6 77023127 77023518 -72493519 - MTA_Mm LTR MaLR -5 391 1 4 1172 672 309 55 55 chr6 77023697 77023896 -72493141 - ID_B1 SINE B4 -24 200 2 4 1172 4223 41 0 2 chr6 77024352 77024885 -72492152 + L1Md_F3 LINE L1 6019 6550 -34 4 1172 881 249 9 22 chr6 77026115 77026337 -72490700 + ID_B1 SINE B4 3 221 -3 4 1172 282 315 170 6 chr6 77027322 77027562 -72489475 + RSINE1 SINE B4 4 278 -14 4 1172 404 101 0 42 chr6 77027577 77027649 -72489388 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1172 562 301 69 30 chr6 77027665 77027867 -72489170 + B4 SINE B4 83 292 0 4 1172 236 303 53 0 chr6 77028937 77029013 -72488024 + L2a LINE L2 3311 3390 -36 4 1172 370 296 260 6 chr6 77029640 77029817 -72487220 + ID_B1 SINE B4 1 222 -2 5 1172 493 296 103 31 chr6 77031145 77031340 -72485697 + B4A SINE B4 12 220 -72 5 1172 210 327 84 28 chr6 77031777 77031884 -72485153 + MIRb SINE MIR 31 143 -125 5 1172 616 345 81 5 chr6 77032464 77032674 -72484363 + B4A SINE B4 4 229 -63 5 1172 445 255 81 9 chr6 77032677 77032788 -72484249 + PB1D9 SINE Alu 1 119 -1 5 1172 450 53 0 0 chr6 77032864 77032921 -72484116 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1172 280 353 101 13 chr6 77033189 77033347 -72483690 + MER5B DNA MER1_type 5 176 -2 5 1172 728 338 14 9 chr6 77034392 77034610 -72482427 + ID_B1 SINE B4 6 224 0 5 1172 180 0 0 0 chr6 77035425 77035445 -72481592 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1172 180 382 18 18 chr6 77035936 77036048 -72480989 - MIR SINE MIR -96 166 55 5 1172 346 339 76 0 chr6 77036428 77036546 -72480491 + MER20 DNA MER1_type 3 129 -90 6 1172 510 313 109 18 chr6 77036542 77036763 -72480274 - MLT1A LTR MaLR -10 364 124 6 1172 1040 301 17 10 chr6 77036807 77037099 -72479938 - MTEa LTR MaLR -2 377 84 6 1172 1760 295 48 35 chr6 77037311 77038411 -72478626 + L1_Mur3 LINE L1 3912 5058 -1088 6 1172 1023 321 131 7 chr6 77038438 77039005 -72478032 + Lx8 LINE L1 6837 7473 0 6 1172 279 412 86 23 chr6 77039340 77039561 -72477476 + B4A SINE B4 1 235 -57 6 1172 639 48 0 0 chr6 77039617 77039700 -72477337 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1172 2624 46 39 100 chr6 77039715 77040104 -72476933 + RLTR10B2 LTR ERVK 1 365 0 6 1172 306 309 42 21 chr6 77042112 77042254 -72474783 - MIR SINE MIR -14 248 104 6 1172 236 53 26 0 chr6 77042605 77042643 -72474394 + (CAA)n Simple_repeat Simple_repeat 1 39 0 6 1172 193 131 43 21 chr6 77042653 77042700 -72474337 + A-rich Low_complexity Low_complexity 3 50 0 7 1172 515 320 67 82 chr6 77042710 77043101 -72473936 - MTD LTR MaLR -29 390 6 7 1172 753 142 0 0 chr6 77043233 77043360 -72473677 + (GAAA)n Simple_repeat Simple_repeat 3 129 0 7 1172 315 313 64 50 chr6 77044397 77044538 -72472499 + MLT1I LTR MaLR 259 401 -10 7 1172 295 308 0 0 chr6 77046472 77046550 -72470487 + Lx8 LINE L1 7146 7223 -250 7 1172 408 328 23 104 chr6 77046673 77046879 -72470158 + MLT1B LTR MaLR 117 311 -79 7 1172 986 154 154 0 chr6 77046879 77047074 -72469963 - URR1A DNA MER1_type 0 226 2 7 1172 408 328 23 104 chr6 77047074 77047126 -72469911 + MLT1B LTR MaLR 312 353 -37 7 1172 858 280 97 49 chr6 77047263 77047612 -72469425 - MTE2b LTR MaLR -5 374 9 7 1172 366 257 101 0 chr6 77048054 77048163 -72468874 - MER5A1 DNA MER1_type -37 129 10 7 1172 487 287 62 8 chr6 77049005 77049135 -72467902 + RSINE1 SINE B4 3 139 -26 7 1172 243 0 0 0 chr6 77049304 77049331 -72467706 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 1172 25 0 0 0 chr6 77049333 77049358 -72467679 + AT_rich Low_complexity Low_complexity 1 25 0 8 1172 216 0 0 0 chr6 77049501 77049525 -72467512 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1172 438 20 0 0 chr6 77050686 77050737 -72466300 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 8 1172 1209 106 0 0 chr6 77050739 77050919 -72466118 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 1172 180 0 0 0 chr6 77051648 77051668 -72465369 + (CA)n Simple_repeat Simple_repeat 2 21 0 8 1172 254 315 141 8 chr6 77052264 77052392 -72464645 + RSINE1 SINE B4 2 146 -19 8 1172 792 32 0 0 chr6 77052419 77052514 -72464523 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 1172 1157 262 73 35 chr6 77052632 77053059 -72463978 - RLTR28B LTR ERVL -38 443 1 8 1172 380 301 31 53 chr6 77053311 77053471 -72463566 - B3 SINE B2 -3 213 27 8 1172 4500 77 3 0 chr6 77053471 77054053 -72462984 - L1_Mus2 LINE L1 -1 6565 5982 9 1172 243 332 72 121 chr6 77054053 77054115 -72462922 - B3 SINE B2 -154 62 2 8 1172 393 58 0 0 chr6 77054737 77054789 -72462248 + (TA)n Simple_repeat Simple_repeat 2 53 0 9 1172 197 278 90 125 chr6 77055078 77055222 -72461815 + MIRb SINE MIR 10 148 -120 9 1172 260 284 0 0 chr6 77056109 77056176 -72460861 + (TATATG)n Simple_repeat Simple_repeat 1 67 0 9 1172 623 213 28 89 chr6 77056181 77056361 -72460676 + B2_Mm2 SINE B2 19 187 -8 9 1172 492 285 12 42 chr6 77056433 77056598 -72460439 + RSINE1 SINE B4 4 163 -2 9 1172 252 0 0 0 chr6 77056608 77056636 -72460401 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1172 192 40 0 0 chr6 77056637 77056662 -72460375 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 9 1172 202 354 23 23 chr6 77058634 77058764 -72458273 - L2a LINE L2 0 3426 3297 9 1172 309 143 0 0 chr6 77059084 77059133 -72457904 + B3A SINE B2 1 49 -149 9 1172 318 50 0 0 chr6 77059198 77059238 -72457799 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1172 480 365 65 5 chr6 77059249 77059464 -72457573 - B4A SINE B4 -7 285 58 1 1172 212 276 43 75 chr6 77059534 77059628 -72457409 - L2a LINE L2 -580 2839 2749 9 1172 22 80 0 0 chr6 77060166 77060216 -72456821 + AT_rich Low_complexity Low_complexity 1 50 0 1 1172 570 272 43 22 chr6 77060362 77060501 -72456536 + RSINE1 SINE B4 3 144 -21 1 1172 315 0 0 0 chr6 77060505 77060540 -72456497 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1172 302 298 25 42 chr6 77061236 77061355 -72455682 + PB1D9 SINE Alu 2 118 -2 1 1172 315 0 0 0 chr6 77061829 77061864 -72455173 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1172 216 183 48 24 chr6 77061885 77061969 -72455068 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 1172 279 325 11 67 chr6 77062079 77062168 -72454869 - B4A SINE B4 0 292 209 1 1172 326 348 11 0 chr6 77062196 77062288 -72454749 - B4 SINE B4 -159 133 41 1 1172 759 75 0 0 chr6 77062329 77062436 -72454601 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1 1172 387 291 108 41 chr6 77062550 77062819 -72454218 + L1M5 LINE L1 4115 4401 -1745 1 1172 443 270 43 48 chr6 77064291 77064478 -72452559 + RMER15 LTR ERVL 340 525 -50 1 1172 843 303 35 62 chr6 77065167 77065569 -72451468 + MTE2a LTR MaLR 1 403 -16 1 1172 359 311 68 8 chr6 77067191 77067324 -72449713 + B1F SINE Alu 1 141 -8 1 1172 288 321 19 19 chr6 77067331 77067439 -72449598 + B3A SINE B2 6 113 -85 1 1172 243 0 0 0 chr6 77067648 77067675 -72449362 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1172 309 292 29 51 chr6 77068282 77068419 -72448618 - MER117 DNA MER1_type -15 182 49 1 1172 1361 265 3 47 chr6 77069749 77070133 -72446904 + MTE2b LTR MaLR 13 379 0 1 1173 601 321 59 96 chr6 77071067 77071370 -72445667 + B4A SINE B4 1 292 0 1 1173 234 62 0 0 chr6 77071373 77071405 -72445632 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1173 330 26 0 0 chr6 77071659 77071698 -72445339 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 1 1173 21 71 0 0 chr6 77072000 77072042 -72444995 + AT_rich Low_complexity Low_complexity 1 42 0 1 1173 467 235 26 0 chr6 77072064 77072179 -72444858 + MER2 DNA MER2_type 91 208 -137 1 1173 405 300 10 0 chr6 77072303 77072403 -72444634 + MER2 DNA MER2_type 217 317 -28 1 1173 621 265 7 7 chr6 77072716 77072864 -72444173 - B1_Mur1 SINE Alu 0 149 2 1 1173 197 103 33 49 chr6 77073683 77073744 -72443293 + T-rich Low_complexity Low_complexity 4 63 0 1 1173 1908 257 40 38 chr6 77073919 77074416 -72442621 - RLTR18B LTR ERVK -6 506 9 1 1173 422 333 152 6 chr6 77074679 77074857 -72442180 + B3 SINE B2 1 204 -12 1 1173 267 103 0 0 chr6 77075030 77075069 -72441968 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1 1173 292 317 87 27 chr6 77076136 77076285 -72440752 + RMER15 LTR ERVL 350 507 -68 1 1173 654 283 48 21 chr6 77076741 77076925 -72440112 + B3A SINE B2 9 187 -8 1 1173 545 287 7 7 chr6 77076936 77077080 -72439957 + B1F1 SINE Alu 6 149 0 1 1173 515 199 5 97 chr6 77077607 77077813 -72439224 - Lx9 LINE L1 0 7644 7458 1 1173 345 47 0 0 chr6 77077815 77077858 -72439179 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1173 1725 254 75 2 chr6 77077903 77078412 -72438625 - Lx9 LINE L1 -158 7486 6941 1 1173 774 163 7 0 chr6 77078426 77078561 -72438476 + URR1B DNA MER1_type 89 224 -1 1 1173 1306 242 41 6 chr6 77078574 77078894 -72438143 - Lx9 LINE L1 -722 6922 6592 1 1173 292 150 0 66 chr6 77081303 77081439 -72435598 + T-rich Low_complexity Low_complexity 4 130 0 1 1173 369 0 0 0 chr6 77081470 77081511 -72435526 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1173 272 282 50 41 chr6 77081540 77081652 -72435385 - PB1D9 SINE Alu -2 118 7 1 1173 312 297 119 0 chr6 77082224 77082325 -72434712 + B1F SINE Alu 25 137 -12 1 1173 1141 340 95 42 chr6 77083113 77083763 -72433274 + MER21B LTR ERV1 35 719 -144 1 1173 549 325 0 0 chr6 77084088 77084214 -72432823 + RSINE1 SINE B4 4 129 -36 1 1173 612 152 0 0 chr6 77084238 77084370 -72432667 + CT-rich Low_complexity Low_complexity 1 132 0 1 1173 252 122 0 0 chr6 77084380 77084421 -72432616 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1 1173 534 243 9 9 chr6 77085229 77085337 -72431700 + PB1D10 SINE Alu 9 116 -1 1 1173 368 302 20 48 chr6 77086107 77086253 -72430784 + ID_B1 SINE B4 82 223 -1 1 1173 185 108 0 26 chr6 77086256 77086294 -72430743 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1 1173 696 145 0 0 chr6 77086318 77086435 -72430602 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 1 1173 208 0 37 0 chr6 77086435 77086462 -72430575 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 1 1173 360 0 0 0 chr6 77086666 77086706 -72430331 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1173 333 0 0 0 chr6 77086754 77086791 -72430246 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1173 330 239 141 0 chr6 77087225 77087317 -72429720 + RSINE1 SINE B4 11 115 -50 1 1173 2520 175 124 9 chr6 77087522 77088047 -72428990 + RMER4B LTR ERVK 1 585 0 1 1173 442 239 34 61 chr6 77088831 77088978 -72428059 + RLTR14 LTR ERV1 225 367 -15 1 1173 24 32 0 0 chr6 77089161 77089192 -72427845 + AT_rich Low_complexity Low_complexity 1 31 0 1 1173 281 274 9 78 chr6 77089194 77089309 -72427728 - B3A SINE B2 -1 197 91 1 1173 402 230 110 0 chr6 77090190 77090290 -72426747 + PB1D7 SINE Alu 1 111 -9 1 1173 1120 243 20 8 chr6 77090559 77090804 -72426233 - Lx5 LINE L1 -16 7034 6787 1 1173 2363 202 0 11 chr6 77090808 77091269 -72425768 + Lx5 LINE L1 6242 6697 -353 1 1173 240 111 0 0 chr6 77091271 77091307 -72425730 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1173 1358 304 55 8 chr6 77091504 77091797 -72425240 + Lx6 LINE L1 6892 7188 -272 1 1173 281 26 26 0 chr6 77091797 77091835 -72425202 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1173 1358 304 55 8 chr6 77091835 77092035 -72425002 + Lx6 LINE L1 7189 7407 -53 1 1173 571 175 62 55 chr6 77092038 77092183 -72424854 + B1_Mur2 SINE Alu 3 148 -1 1 1173 1019 222 5 19 chr6 77092244 77092460 -72424577 - B3 SINE B2 0 216 4 1 1173 194 91 0 64 chr6 77092462 77092509 -72424528 + A-rich Low_complexity Low_complexity 1 44 0 1 1173 827 188 171 5 chr6 77092738 77092931 -72424106 + URR1B DNA MER1_type 1 225 0 1 1173 500 152 0 10 chr6 77093158 77093258 -72423779 + GA-rich Low_complexity Low_complexity 1 99 0 1 1173 648 325 27 60 chr6 77094344 77094642 -72422395 + B4A SINE B4 1 288 -4 1 1173 595 256 24 8 chr6 77095118 77095244 -72421793 - RSINE1 SINE B4 -36 129 2 1 1173 415 230 0 22 chr6 77096206 77096295 -72420742 + B1_Mus1 SINE Alu 10 96 -52 1 1173 291 71 0 0 chr6 77096322 77096364 -72420673 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 1173 434 321 49 87 chr6 77096427 77096714 -72420323 + B4 SINE B4 2 277 -15 1 1173 209 179 0 0 chr6 77096771 77096810 -72420227 + (CCA)n Simple_repeat Simple_repeat 3 41 0 1 1173 22 0 0 0 chr6 77096832 77096854 -72420183 + AT_rich Low_complexity Low_complexity 1 22 0 1 1173 382 258 35 52 chr6 77096994 77097166 -72419871 + MER96B DNA hAT 8 176 -241 1 1173 564 292 18 31 chr6 77097306 77097529 -72419508 + Lx7 LINE L1 6561 6780 -916 1 1173 517 348 53 10 chr6 77097555 77097761 -72419276 + ID_B1 SINE B4 6 220 -4 1 1173 21 0 0 0 chr6 77097776 77097797 -72419240 + AT_rich Low_complexity Low_complexity 1 21 0 1 1173 396 0 0 0 chr6 77098001 77098045 -72418992 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1173 5682 64 31 8 chr6 77098065 77098809 -72418228 - L1_Mus1 LINE L1 -1 6566 5806 1 1173 426 65 0 0 chr6 77098809 77098871 -72418166 + (CTAA)n Simple_repeat Simple_repeat 3 64 0 1 1173 571 343 12 23 chr6 77099475 77099648 -72417389 - B3A SINE B2 -27 171 1 1 1173 408 312 64 0 chr6 77100200 77100325 -72416712 + ID_B1 SINE B4 92 224 0 1 1173 516 323 57 31 chr6 77100557 77100749 -72416288 - B4A SINE B4 -87 205 9 1 1173 667 341 10 5 chr6 77101265 77101474 -72415563 + ID_B1 SINE B4 12 221 -3 1 1173 236 348 0 63 chr6 77102680 77102775 -72414262 - Tigger5 DNA MER2_type 0 2406 2318 1 1173 532 325 46 0 chr6 77102816 77103010 -72414027 - Tigger5 DNA MER2_type -2203 203 1 1 1173 387 0 0 0 chr6 77104053 77104096 -72412941 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1173 2567 23 0 16 chr6 77104196 77104510 -72412527 - L1Md_F3 LINE L1 -2 6582 6274 1 1173 348 24 0 0 chr6 77104542 77104583 -72412454 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1173 1324 284 133 11 chr6 77104945 77105472 -72411565 + Lx8 LINE L1 6636 7226 -247 1 1173 473 198 9 0 chr6 77105483 77105599 -72411438 + GA-rich Low_complexity Low_complexity 2 118 0 1 1173 639 268 13 32 chr6 77107393 77107547 -72409490 + B3A SINE B2 1 151 -47 1 1173 447 78 0 0 chr6 77107549 77107613 -72409424 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1173 679 136 15 8 chr6 77107716 77107849 -72409188 + L1Md_F3 LINE L1 6451 6584 0 1 1173 579 100 27 0 chr6 77108284 77108394 -72408643 + (TG)n Simple_repeat Simple_repeat 1 113 0 1 1173 381 333 49 16 chr6 77108458 77108580 -72408457 + RSINE1 SINE B4 14 139 -26 1 1173 254 356 0 0 chr6 77108694 77108767 -72408270 - ID4 SINE ID -2 81 9 1 1173 677 223 48 21 chr6 77108785 77108973 -72408064 - B3A SINE B2 -1 197 5 1 1173 254 359 44 13 chr6 77109018 77109176 -72407861 + RSINE1 SINE B4 2 164 -1 1 1173 297 0 0 0 chr6 77109186 77109219 -72407818 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1173 28 0 0 0 chr6 77109224 77109252 -72407785 + AT_rich Low_complexity Low_complexity 1 28 0 1 1173 288 294 87 0 chr6 77109736 77109828 -72407209 + RSINE1 SINE B4 28 127 -38 1 1173 762 84 0 0 chr6 77109831 77109938 -72407099 + (CA)n Simple_repeat Simple_repeat 2 108 0 1 1173 261 0 0 0 chr6 77110180 77110209 -72406828 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1173 485 276 32 233 chr6 77110217 77110298 -72406739 + ID SINE ID 2 79 -145 2 1173 495 340 6 0 chr6 77110298 77110460 -72406577 + RSINE1 SINE B4 3 165 0 2 1173 485 276 32 233 chr6 77110460 77110503 -72406534 + ID_B1 SINE B4 80 103 -121 2 1173 798 221 0 39 chr6 77110503 77110526 -72406511 + B1_Mur3 SINE Alu 1 22 -127 2 1173 2050 194 0 35 chr6 77110526 77110948 -72406089 + MTB_Mm LTR MaLR 1 407 0 2 1173 485 276 32 233 chr6 77110948 77111078 -72405959 + ID_B1 SINE B4 104 224 0 2 1173 1025 121 6 0 chr6 77111082 77111247 -72405790 + (GGAA)n Simple_repeat Simple_repeat 2 167 0 2 1173 486 292 9 0 chr6 77111283 77111389 -72405648 + RSINE1 SINE B4 57 163 -2 2 1173 21 0 0 0 chr6 77111397 77111418 -72405619 + AT_rich Low_complexity Low_complexity 1 21 0 2 1173 220 200 91 26 chr6 77111702 77111779 -72405258 + MIRb SINE MIR 171 252 -16 2 1173 184 209 45 23 chr6 77111798 77111842 -72405195 + L2c LINE L2 3272 3316 -71 2 1173 429 20 0 0 chr6 77112685 77112735 -72404302 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1173 330 26 0 0 chr6 77113006 77113045 -72403992 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1173 252 59 0 0 chr6 77113197 77113231 -72403806 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1173 560 40 13 0 chr6 77113231 77113305 -72403732 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 2 1173 870 327 68 22 chr6 77113447 77113813 -72403224 + MLT1B LTR MaLR 1 383 -7 2 1173 390 307 9 9 chr6 77114165 77114280 -72402757 + PB1D10 SINE Alu 1 115 -2 2 1173 235 304 59 51 chr6 77114827 77114945 -72402092 - MER20 DNA MER1_type -11 208 90 2 1173 526 247 62 107 chr6 77115224 77115401 -72401636 + B3A SINE B2 30 198 0 2 1173 245 29 0 29 chr6 77115668 77115703 -72401334 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 2 1173 500 340 126 32 chr6 77115703 77115949 -72401088 + MLT2B3 LTR ERVL 266 534 -20 2 1173 288 284 38 38 chr6 77116228 77116334 -72400703 + MER94 DNA AcHobo 28 133 -1 2 1173 402 314 7 60 chr6 77117025 77117174 -72399863 + MTE2b LTR MaLR 51 191 -188 2 1173 1078 299 51 62 chr6 77117105 77117557 -72399480 - MLT1D LTR MaLR -56 449 3 2 1173 697 276 30 6 chr6 77117587 77117755 -72399282 + B3 SINE B2 37 208 -8 2 1173 3416 151 14 39 chr6 77117919 77118041 -72398996 - L1_Mur1 LINE L1 -1020 4866 4740 2 1173 330 80 0 0 chr6 77118041 77118091 -72398946 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 2 1173 3416 151 14 39 chr6 77118091 77118590 -72398447 - L1_Mur1 LINE L1 -1147 4739 4260 2 1173 6241 147 22 38 chr6 77118590 77119657 -72397380 + Lx2B LINE L1 5948 6997 -3 2 1173 332 284 32 0 chr6 77119730 77119825 -72397212 - PB1D10 SINE Alu -6 111 17 2 1173 1490 70 27 0 chr6 77120870 77121056 -72395981 + B2_Mm2 SINE B2 1 191 -4 2 1173 834 274 253 36 chr6 77121211 77121681 -72395356 + RMER15 LTR ERVL 4 575 0 2 1173 459 224 55 18 chr6 77121942 77122051 -72394986 + B1_Mur1 SINE Alu 31 143 -6 2 1173 449 281 158 20 chr6 77122218 77122414 -72394623 + ID_B1 SINE B4 1 223 -1 2 1173 385 287 97 45 chr6 77122428 77122619 -72394418 + B4A SINE B4 5 202 -90 2 1173 304 257 20 13 chr6 77122729 77123130 -72393907 + (CA)n Simple_repeat Simple_repeat 1 404 0 2 1173 234 0 0 0 chr6 77124192 77124218 -72392819 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1173 286 176 12 119 chr6 77124279 77124363 -72392674 - B1_Mur3 SINE Alu 0 149 75 2 1173 570 274 43 49 chr6 77124370 77124554 -72392483 - B4A SINE B4 -84 208 26 2 1173 342 225 0 0 chr6 77125057 77125128 -72391909 - B4A SINE B4 -5 287 217 2 1173 386 250 0 0 chr6 77125157 77125237 -72391800 - B3A SINE B2 -81 117 38 2 1173 399 260 97 8 chr6 77125240 77125364 -72391673 - B4A SINE B4 -61 231 97 2 1173 21 0 0 0 chr6 77125749 77125770 -72391267 + AT_rich Low_complexity Low_complexity 1 21 0 2 1173 472 377 6 6 chr6 77126704 77126872 -72390165 - B3A SINE B2 -14 184 17 2 1173 195 323 32 0 chr6 77127575 77127637 -72389400 - MIRc SINE MIR -113 155 92 2 1173 1121 293 58 84 chr6 77127689 77128202 -72388835 + MER67C LTR ERV1 52 566 -145 2 1173 450 0 0 0 chr6 77128202 77128252 -72388785 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1173 297 0 0 0 chr6 77128252 77128284 -72388753 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1173 1121 293 58 84 chr6 77128284 77128425 -72388612 + MER67C LTR ERV1 567 689 -22 2 1173 260 65 0 42 chr6 77128582 77128630 -72388407 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1173 585 270 67 97 chr6 77128645 77129035 -72388002 - MTE2a LTR MaLR 0 379 2 2 1173 252 0 0 0 chr6 77129727 77129755 -72387282 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1173 510 31 0 0 chr6 77129755 77129819 -72387218 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 2 1173 272 320 70 43 chr6 77129917 77130103 -72386934 + B3 SINE B2 3 216 0 2 1173 462 209 87 43 chr6 77130127 77130242 -72386795 + B1_Mus1 SINE Alu 29 148 0 2 1173 452 193 36 0 chr6 77130367 77130450 -72386587 - ID_B1 SINE B4 -21 203 118 2 1173 339 264 198 139 chr6 77130598 77130770 -72386267 - B3 SINE B2 -27 189 8 2 1173 258 32 0 0 chr6 77130958 77130989 -72386048 + (ATAGG)n Simple_repeat Simple_repeat 1 31 0 2 1173 506 304 55 7 chr6 77131145 77131291 -72385746 + RSINE1 SINE B4 11 163 -2 2 1173 475 274 34 0 chr6 77131437 77131554 -72385483 + B1F SINE Alu 20 140 -9 2 1173 417 70 0 0 chr6 77131558 77131615 -72385422 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1173 340 314 68 96 chr6 77131766 77132103 -72384934 + L1M5 LINE L1 4401 4727 -1419 2 1173 306 0 0 0 chr6 77132177 77132211 -72384826 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1173 246 281 21 105 chr6 77132469 77132660 -72384377 + Charlie2b DNA MER1_type 2592 2766 -16 2 1173 206 200 33 0 chr6 77132870 77132930 -72384107 + A-rich Low_complexity Low_complexity 1 62 0 2 1173 1933 195 16 86 chr6 77133223 77133437 -72383600 + MTC LTR MaLR 1 202 -219 2 1173 216 0 0 0 chr6 77133437 77133461 -72383576 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1173 1933 195 16 86 chr6 77133461 77133689 -72383348 + MTC LTR MaLR 203 412 -9 2 1173 373 211 325 30 chr6 77134018 77134184 -72382853 + ID_B1 SINE B4 1 215 -9 2 1173 954 271 80 48 chr6 77134547 77134607 -72382430 + ORR1E LTR MaLR 6 63 -296 2 1173 429 54 0 0 chr6 77134607 77134663 -72382374 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1173 954 271 80 48 chr6 77134663 77134939 -72382098 + ORR1E LTR MaLR 64 353 -6 2 1173 235 293 44 96 chr6 77135683 77135819 -72381218 - MIRb SINE MIR -137 131 3 2 1173 564 56 0 0 chr6 77137630 77137702 -72379335 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 2 1173 631 99 61 12 chr6 77137736 77137900 -72379137 + GA-rich Low_complexity Low_complexity 2 173 0 2 1173 1059 79 17 17 chr6 77137900 77138080 -72378957 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 2 1173 477 0 0 0 chr6 77138081 77138134 -72378903 + (GAGAA)n Simple_repeat Simple_repeat 1 53 0 2 1173 932 272 38 85 chr6 77138828 77139306 -72377731 + L1MA4A LINE L1 5365 5820 -354 2 1173 438 69 0 0 chr6 77139441 77139499 -72377538 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1173 438 260 34 18 chr6 77139843 77140012 -72377025 + L1MA4A LINE L1 5745 5939 -361 2 1173 654 47 0 0 chr6 77140168 77140254 -72376783 + (GGAA)n Simple_repeat Simple_repeat 2 87 0 2 1173 280 236 111 61 chr6 77140260 77140359 -72376678 + B1_Mur1 SINE Alu 46 149 0 2 1173 381 331 32 45 chr6 77140589 77140744 -72376293 + RSINE1 SINE B4 3 155 -10 2 1173 21 0 0 0 chr6 77140745 77140766 -72376271 + AT_rich Low_complexity Low_complexity 1 21 0 2 1173 471 18 0 0 chr6 77141158 77141214 -72375823 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1173 468 289 14 86 chr6 77141216 77141356 -72375681 - B3A SINE B2 -26 172 43 2 1173 258 259 48 24 chr6 77141354 77141437 -72375600 - B3 SINE B2 -118 98 14 2 1173 387 0 0 0 chr6 77143009 77143052 -72373985 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1173 351 259 72 56 chr6 77143502 77143682 -72373355 - B2_Mm2 SINE B2 -11 184 2 2 1173 220 258 242 0 chr6 77143732 77143798 -72373239 - ID4_ SINE ID 0 83 2 2 1173 575 147 45 18 chr6 77143847 77143958 -72373079 - B1F2 SINE Alu -1 148 35 2 1173 273 284 42 10 chr6 77144168 77144264 -72372773 + MER20B DNA MER1_type 43 141 -642 2 1173 779 259 48 19 chr6 77144646 77144855 -72372182 + ID_B1 SINE B4 4 218 -6 2 1173 764 228 14 7 chr6 77145896 77146042 -72370995 - B1_Mur2 SINE Alu -1 148 2 2 1173 372 277 62 195 chr6 77146338 77146594 -72370443 + B4 SINE B4 65 286 -6 2 1173 819 259 60 10 chr6 77147310 77147509 -72369528 + ID_B1 SINE B4 14 222 -2 2 1173 248 345 44 38 chr6 77149174 77149362 -72367675 - L2a LINE L2 -1 3425 3183 2 1173 898 144 247 32 chr6 77149987 77150173 -72366864 + URR1A DNA MER1_type 1 226 0 2 1173 255 203 0 0 chr6 77151155 77151214 -72365823 + GA-rich Low_complexity Low_complexity 2 60 0 2 1173 426 322 138 13 chr6 77151347 77151665 -72365372 - L2a LINE L2 -946 2473 2116 2 1173 452 299 72 29 chr6 77152197 77152335 -72364702 + RSINE1 SINE B4 22 165 0 2 1173 600 14 0 0 chr6 77152343 77152412 -72364625 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 2 1173 378 0 0 0 chr6 77152443 77152485 -72364552 + (TATG)n Simple_repeat Simple_repeat 3 44 0 2 1173 317 250 9 0 chr6 77152894 77153002 -72364035 + CT-rich Low_complexity Low_complexity 4 112 0 2 1173 833 296 20 0 chr6 77153007 77153206 -72363831 - ID_B1 SINE B4 -17 207 5 2 1173 395 272 100 38 chr6 77153294 77153504 -72363533 + MLT1B LTR MaLR 1 223 -167 2 1173 180 0 0 0 chr6 77153757 77153777 -72363260 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 1173 1640 282 64 54 chr6 77154191 77155001 -72362036 - L1MB7 LINE L1 -9 6175 5358 2 1173 261 0 0 0 chr6 77155001 77155030 -72362007 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1173 515 358 107 90 chr6 77155105 77155658 -72361379 + MER21B LTR ERV1 137 698 -165 3 1173 316 282 40 63 chr6 77155717 77155940 -72361097 - L1MB7 LINE L1 -824 5322 5105 2 1173 276 350 170 7 chr6 77155949 77156090 -72360947 - RSINE1 SINE B4 0 165 2 3 1173 496 276 6 68 chr6 77156161 77156324 -72360713 - RSINE1 SINE B4 0 165 13 3 1173 335 320 54 54 chr6 77157716 77157845 -72359192 - RSINE1 SINE B4 -33 132 4 3 1173 1083 273 77 77 chr6 77158904 77159281 -72357756 + MTE2b LTR MaLR 3 379 0 3 1173 1136 78 0 16 chr6 77159873 77160056 -72356981 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1173 778 274 5 33 chr6 77160238 77160249 -72356788 - B3 SINE B2 -6 210 200 3 1173 288 0 0 0 chr6 77160249 77160281 -72356756 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1173 778 274 5 33 chr6 77160281 77160484 -72356553 - B3 SINE B2 -17 199 2 3 1173 411 256 304 13 chr6 77160949 77161179 -72355858 + L1ME2z LINE L1 6068 6364 -80 3 1173 706 335 47 16 chr6 77161264 77161522 -72355515 + MLT1A0 LTR MaLR 100 365 0 3 1173 661 281 20 40 chr6 77161588 77161788 -72355249 + B3A SINE B2 3 198 0 3 1173 432 0 0 0 chr6 77162470 77162518 -72354519 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1173 665 258 117 66 chr6 77162527 77162801 -72354236 - B4A SINE B4 -2 290 3 3 1173 519 354 60 14 chr6 77163121 77163402 -72353635 - MER58B DNA MER1_type -41 300 7 3 1173 315 169 0 0 chr6 77163615 77163686 -72353351 + CT-rich Low_complexity Low_complexity 1 71 0 3 1173 522 311 66 19 chr6 77164332 77164501 -72352536 + B3A SINE B2 3 174 -24 3 1173 423 0 0 0 chr6 77164501 77164548 -72352489 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1173 478 327 43 28 chr6 77164548 77164589 -72352448 + B3 SINE B2 170 215 -1 3 1173 23 0 0 0 chr6 77164647 77164670 -72352367 + AT_rich Low_complexity Low_complexity 1 23 0 3 1173 768 277 56 60 chr6 77165121 77165405 -72351632 + B4A SINE B4 1 283 -9 3 1173 1260 248 46 15 chr6 77167223 77167547 -72349490 - ORR1E LTR MaLR -25 334 1 3 1173 255 114 0 0 chr6 77168840 77168884 -72348153 + (T)n Simple_repeat Simple_repeat 1 44 0 3 1173 325 323 27 137 chr6 77169490 77169709 -72347328 + MIR3 SINE MIR 11 205 -3 3 1173 581 257 52 0 chr6 77170218 77170354 -72346683 - B1_Mur2 SINE Alu -6 143 1 3 1173 1244 279 54 30 chr6 77170599 77170969 -72346068 - MTEa LTR MaLR 0 379 1 3 1173 432 0 0 0 chr6 77172154 77172202 -72344835 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1173 1006 82 82 0 chr6 77172223 77172358 -72344679 - B1_Mus2 SINE Alu 0 147 2 3 1173 362 240 142 30 chr6 77172651 77172785 -72344252 + B3A SINE B2 36 184 -11 3 1173 189 0 0 0 chr6 77173146 77173167 -72343870 + (CAGG)n Simple_repeat Simple_repeat 4 24 0 3 1173 233 222 0 73 chr6 77173737 77173805 -72343232 - Lx8 LINE L1 -8 7465 7403 3 1173 660 293 29 64 chr6 77173814 77173888 -72343149 - ID_B1 SINE B4 -11 213 142 3 1173 783 222 92 36 chr6 77173888 77174084 -72342953 - B3 SINE B2 -7 209 3 3 1173 660 293 29 64 chr6 77174084 77174213 -72342824 - ID_B1 SINE B4 -83 141 17 3 1173 556 248 31 23 chr6 77174727 77174855 -72342182 + B3A SINE B2 1 129 -69 3 1173 744 42 0 0 chr6 77174858 77174954 -72342083 + (CA)n Simple_repeat Simple_repeat 2 97 0 3 1173 279 0 0 0 chr6 77175069 77175100 -72341937 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1173 204 222 19 0 chr6 77175308 77175347 -72341690 + T-rich Low_complexity Low_complexity 17 56 0 3 1173 793 179 71 0 chr6 77175347 77175487 -72341550 - B1_Mur4 SINE Alu 0 150 1 3 1173 204 222 19 0 chr6 77175487 77175501 -72341536 + T-rich Low_complexity Low_complexity 3 16 0 3 1173 784 191 69 0 chr6 77175915 77176046 -72340991 + B1_Mur1 SINE Alu 1 140 -9 3 1173 21 0 0 0 chr6 77177677 77177698 -72339339 + AT_rich Low_complexity Low_complexity 1 21 0 3 1173 586 245 36 7 chr6 77177802 77177942 -72339095 + B3A SINE B2 2 145 -53 3 1173 486 83 0 0 chr6 77177961 77178033 -72339004 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1173 31 0 0 0 chr6 77178044 77178075 -72338962 + AT_rich Low_complexity Low_complexity 1 31 0 3 1173 1312 277 48 0 chr6 77178857 77179193 -72337844 + ORR1E LTR MaLR 1 352 -7 3 1173 889 269 51 145 chr6 77180259 77180672 -72336365 - MTE2a LTR MaLR 0 379 6 3 1173 25 75 0 0 chr6 77181491 77181544 -72335493 + AT_rich Low_complexity Low_complexity 1 53 0 3 1173 333 319 16 25 chr6 77181766 77181888 -72335149 - MER5A1 DNA MER1_type -2 164 44 3 1173 268 277 119 0 chr6 77182179 77182280 -72334757 + MLT1H LTR MaLR 262 374 -175 3 1173 579 260 16 75 chr6 77183373 77183560 -72333477 + B3A SINE B2 4 179 -19 3 1173 424 226 287 6 chr6 77183618 77183785 -72333252 + B3A SINE B2 3 216 0 3 1173 335 364 6 38 chr6 77184509 77184692 -72332345 - HAL1-3A_ME LINE L1 -706 2152 1976 3 1173 402 311 78 104 chr6 77184776 77185045 -72331992 - B4 SINE B4 -30 262 1 3 1173 180 0 0 0 chr6 77185802 77185822 -72331215 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1173 516 45 0 0 chr6 77185822 77185888 -72331149 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 1173 292 190 12 12 chr6 77187225 77187305 -72329732 + CT-rich Low_complexity Low_complexity 2 81 0 3 1173 352 342 97 46 chr6 77187312 77187508 -72329529 - ID_B1 SINE B4 -14 210 5 3 1173 21 36 0 0 chr6 77187517 77187545 -72329492 + AT_rich Low_complexity Low_complexity 1 28 0 3 1173 183 294 0 19 chr6 77187561 77187613 -72329424 - MER5A1 DNA MER1_type -70 96 46 3 1173 459 259 45 22 chr6 77187767 77187901 -72329136 + ID_B1 SINE B4 86 222 -2 3 1173 270 0 0 0 chr6 77188820 77188850 -72328187 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1173 649 309 79 38 chr6 77188863 77189129 -72327908 - B4A SINE B4 -15 277 1 3 1173 233 75 25 0 chr6 77189292 77189332 -72327705 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 1173 341 275 124 38 chr6 77190860 77191045 -72325992 + MIR3 SINE MIR 5 205 -3 3 1173 198 71 0 0 chr6 77191971 77191999 -72325038 + (GGAGA)n Simple_repeat Simple_repeat 5 32 0 3 1173 1232 89 0 6 chr6 77192002 77192183 -72324854 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 3 1173 225 0 0 0 chr6 77192183 77192208 -72324829 + (GGAGA)n Simple_repeat Simple_repeat 1 25 0 3 1173 185 94 31 0 chr6 77193445 77193477 -72323560 + (TCTCCC)n Simple_repeat Simple_repeat 5 37 0 3 1173 1323 50 0 0 chr6 77196017 77196197 -72320840 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1173 315 71 0 0 chr6 77196516 77196558 -72320479 + (TTA)n Simple_repeat Simple_repeat 2 43 0 3 1173 351 44 0 0 chr6 77197165 77197210 -72319827 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1173 186 118 0 0 chr6 77197530 77197564 -72319473 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 3 1173 432 0 0 0 chr6 77199824 77199872 -72317165 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1173 306 50 0 0 chr6 77200524 77200564 -72316473 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1173 330 87 0 0 chr6 77200564 77200610 -72316427 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1173 231 36 0 0 chr6 77200626 77200654 -72316383 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1173 344 255 176 47 chr6 77200654 77200795 -72316242 + MER20 DNA MER1_type 35 195 -24 3 1174 286 70 0 50 chr6 77201556 77201616 -72315421 + (CAAAAA)n Simple_repeat Simple_repeat 3 59 0 3 1174 237 317 12 0 chr6 77202246 77202328 -72314709 + GA-rich Low_complexity Low_complexity 4 86 0 3 1174 209 135 27 0 chr6 77204374 77204411 -72312626 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 3 1174 254 197 247 13 chr6 77204538 77204615 -72312422 + RSINE1 SINE B4 2 96 -69 3 1174 440 274 39 46 chr6 77205876 77206029 -72311008 + MER106B DNA MER1_type 895 1046 -13 3 1174 924 171 13 33 chr6 77206645 77206796 -72310241 - B1_Mur4 SINE Alu -2 148 1 3 1174 459 0 0 0 chr6 77207201 77207252 -72309785 + (TTC)n Simple_repeat Simple_repeat 2 52 0 3 1174 243 0 0 0 chr6 77207252 77207279 -72309758 + (TTA)n Simple_repeat Simple_repeat 2 28 0 3 1174 604 145 16 16 chr6 77207701 77207827 -72309210 + A-rich Low_complexity Low_complexity 3 128 0 3 1174 702 113 0 0 chr6 77208447 77208553 -72308484 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 3 1174 680 346 86 26 chr6 77209604 77209871 -72307166 - B4A SINE B4 -3 289 7 3 1174 625 281 41 131 chr6 77209896 77210117 -72306920 - B3 SINE B2 -14 202 2 3 1174 448 283 182 36 chr6 77211168 77211505 -72305532 - L1MB8 LINE L1 -200 5984 5604 3 1174 1219 97 0 17 chr6 77211521 77211699 -72305338 - B2_Mm2 SINE B2 -20 175 1 3 1174 226 269 61 61 chr6 77211714 77211829 -72305208 - L1MB8 LINE L1 -582 5596 5482 3 1174 345 47 0 0 chr6 77211855 77211898 -72305139 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1174 228 325 24 12 chr6 77212409 77212493 -72304544 - MTEa LTR MaLR 0 379 295 3 1174 305 293 204 30 chr6 77212503 77212665 -72304372 - B4A SINE B4 -104 188 1 3 1174 387 0 0 0 chr6 77212887 77212930 -72304107 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1174 341 379 0 19 chr6 77212953 77213058 -72303979 - RSINE1 SINE B4 -56 109 7 3 1174 289 294 104 38 chr6 77213933 77214039 -72302998 - B3 SINE B2 -57 159 47 3 1174 1546 204 58 40 chr6 77214065 77214442 -72302595 + ORR1C2 LTR MaLR 1 384 0 3 1174 337 283 131 9 chr6 77214826 77214933 -72302104 - RSINE1 SINE B4 -44 121 2 3 1174 270 0 0 0 chr6 77215089 77215119 -72301918 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1174 747 59 25 0 chr6 77215121 77215239 -72301798 + (GA)n Simple_repeat Simple_repeat 1 121 0 3 1174 430 235 96 10 chr6 77215249 77215369 -72301668 - RSINE1 SINE B4 -36 129 1 3 1174 474 244 160 16 chr6 77216112 77216237 -72300800 + B1_Mm SINE Alu 4 146 -1 3 1174 192 163 0 0 chr6 77216240 77216283 -72300754 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1174 238 366 49 10 chr6 77216316 77216418 -72300619 + MER77 LTR ERVL 231 336 -271 4 1174 540 0 0 0 chr6 77216553 77216613 -72300424 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1174 4287 33 4 0 chr6 77216726 77217238 -72299799 - L1_Mm LINE L1 -1211 4672 4159 4 1174 7839 7 0 12 chr6 77217238 77218077 -72298960 + L1Md_T LINE L1 5754 6582 0 4 1174 759 264 20 10 chr6 77218090 77218106 -72298931 - B3 SINE B2 -12 204 188 4 1174 1130 112 6 0 chr6 77218106 77218284 -72298753 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 1174 759 264 20 10 chr6 77218284 77218462 -72298575 - B3 SINE B2 -29 187 8 4 1174 464 0 0 18 chr6 77219181 77219238 -72297799 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1174 222 301 53 27 chr6 77219276 77219351 -72297686 - RSINE1 SINE B4 -17 148 72 4 1174 236 286 14 14 chr6 77219614 77219685 -72297352 + CT-rich Low_complexity Low_complexity 4 74 0 4 1174 22 0 0 0 chr6 77219841 77219863 -72297174 + AT_rich Low_complexity Low_complexity 1 22 0 4 1174 21 0 0 0 chr6 77220311 77220332 -72296705 + AT_rich Low_complexity Low_complexity 1 21 0 4 1174 590 289 10 65 chr6 77220697 77220901 -72296136 + B3A SINE B2 12 189 -6 4 1174 23 33 0 0 chr6 77220948 77220978 -72296059 + AT_rich Low_complexity Low_complexity 1 30 0 4 1174 573 280 26 20 chr6 77221134 77221287 -72295750 - RSINE1 SINE B4 0 165 12 4 1174 307 262 62 23 chr6 77221366 77221495 -72295542 + MER53 DNA hAT 22 155 -38 4 1174 4956 34 0 2 chr6 77222792 77223379 -72293658 - L1Md_A LINE L1 -1 6581 5996 4 1174 567 244 0 25 chr6 77223580 77223702 -72293335 - B1_Mus1 SINE Alu -29 119 1 4 1174 384 244 11 53 chr6 77223702 77223797 -72293240 - 4.5SRNA scRNA scRNA -3 91 1 4 1174 22 0 0 0 chr6 77224321 77224343 -72292694 + AT_rich Low_complexity Low_complexity 1 22 0 4 1174 800 285 33 73 chr6 77224463 77224766 -72292271 - B4 SINE B4 0 292 2 4 1174 1388 80 21 0 chr6 77224991 77225179 -72291858 + B2_Mm1t SINE B2 1 192 -1 4 1174 1115 83 0 0 chr6 77225184 77225329 -72291708 + B1_Mm SINE Alu 2 146 -1 4 1174 1110 201 173 28 chr6 77225476 77225799 -72291238 + ORR1D1 LTR MaLR 5 374 0 4 1174 3181 53 45 0 chr6 77226684 77227083 -72289954 + L1_Mus1 LINE L1 6149 6565 -2 4 1174 262 385 97 34 chr6 77227960 77228135 -72288902 + MLT1A1 LTR MaLR 26 211 -197 4 1174 255 314 23 23 chr6 77228172 77228260 -72288777 + MLT1A1 LTR MaLR 521 608 -19 4 1174 1635 229 11 14 chr6 77229381 77229731 -72287306 - ORR1B1 LTR MaLR -8 386 38 4 1174 602 239 140 23 chr6 77229866 77230037 -72287000 + B3A SINE B2 2 192 -6 4 1174 249 139 0 0 chr6 77231064 77231107 -72285930 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1174 1969 294 63 30 chr6 77232188 77232310 -72284727 - Lx8 LINE L1 -3 7470 7331 4 1174 288 0 0 0 chr6 77232310 77232342 -72284695 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 4 1174 1969 294 63 30 chr6 77232342 77233046 -72283991 - Lx8 LINE L1 -143 7330 6618 4 1174 667 212 20 14 chr6 77234377 77234525 -72282512 - B1_Mur3 SINE Alu 0 149 1 4 1174 545 302 54 44 chr6 77234525 77234729 -72282308 + B4 SINE B4 67 272 -20 4 1174 732 222 7 27 chr6 77234870 77235018 -72282019 + B1_Mur1 SINE Alu 5 149 0 4 1174 186 115 58 0 chr6 77235018 77235070 -72281967 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 4 1174 832 312 86 0 chr6 77235344 77235450 -72281587 - B4 SINE B4 0 292 170 4 1174 1419 88 93 0 chr6 77235450 77235666 -72281371 + L1_Mus3 LINE L1 6398 6633 -5 4 1174 832 312 86 0 chr6 77235666 77235828 -72281209 - B4 SINE B4 -123 169 2 4 1174 225 330 80 0 chr6 77236468 77236556 -72280481 + L2b LINE L2 3249 3343 -32 4 1174 1008 95 0 0 chr6 77237006 77237174 -72279863 + (GA)n Simple_repeat Simple_repeat 1 168 0 4 1174 558 231 193 12 chr6 77237826 77237997 -72279040 - B3 SINE B2 -14 202 1 4 1174 200 330 161 52 chr6 77240430 77240622 -72276415 - MIRc SINE MIR -22 246 34 4 1174 389 70 18 0 chr6 77240626 77240683 -72276354 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1174 352 161 12 12 chr6 77241860 77241942 -72275095 + CT-rich Low_complexity Low_complexity 3 84 0 4 1174 279 0 0 0 chr6 77241944 77241975 -72275062 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1174 577 285 14 7 chr6 77241977 77242122 -72274915 - B4 SINE B4 -25 267 122 4 1174 363 239 0 0 chr6 77242138 77242205 -72274832 - B4 SINE B4 -225 67 1 4 1174 348 341 105 46 chr6 77242461 77242784 -72274253 - MTD LTR MaLR -77 342 1 4 1174 231 103 0 0 chr6 77243592 77243631 -72273406 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1174 666 0 0 0 chr6 77243979 77244053 -72272984 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1174 533 55 14 0 chr6 77244873 77244946 -72272091 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 1174 280 285 149 28 chr6 77244956 77245097 -72271940 - RSINE1 SINE B4 -4 161 4 4 1174 2240 234 80 2 chr6 77246437 77247074 -72269963 + Lx9 LINE L1 6958 7644 0 4 1174 262 282 51 13 chr6 77247211 77247290 -72269747 + B1F SINE Alu 13 94 -55 4 1174 384 111 0 0 chr6 77247341 77247404 -72269633 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1174 936 39 0 68 chr6 77247973 77248164 -72268873 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 4 1174 323 308 25 8 chr6 77248167 77248288 -72268749 + CT-rich Low_complexity Low_complexity 5 127 0 4 1174 285 51 0 0 chr6 77248502 77248541 -72268496 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 4 1174 1892 236 27 7 chr6 77248880 77249286 -72267751 - MTD LTR MaLR 0 419 6 4 1174 297 277 0 0 chr6 77249773 77249874 -72267163 + L1M3 LINE L1 4462 4562 -1578 4 1174 322 333 31 55 chr6 77250159 77250286 -72266751 - B1F SINE Alu -24 125 2 4 1174 236 347 28 0 chr6 77250226 77250298 -72266739 - ID_B1 SINE B4 -82 142 69 4 1174 519 17 0 0 chr6 77250626 77250686 -72266351 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1174 501 154 0 0 chr6 77251716 77251826 -72265211 + GA-rich Low_complexity Low_complexity 1 110 0 4 1174 229 330 68 0 chr6 77252438 77252526 -72264511 - MIR3 SINE MIR -7 201 108 4 1174 805 305 38 99 chr6 77252534 77252927 -72264110 - MTEa LTR MaLR -2 377 9 4 1174 414 0 0 0 chr6 77253274 77253320 -72263717 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1174 31 26 0 0 chr6 77253344 77253382 -72263655 + AT_rich Low_complexity Low_complexity 1 38 0 4 1174 1062 83 14 0 chr6 77254180 77254325 -72262712 - B1_Mus2 SINE Alu 0 147 1 4 1174 606 28 0 0 chr6 77256026 77256098 -72260939 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1174 229 343 30 20 chr6 77256415 77256516 -72260521 + MIRb SINE MIR 131 232 -36 4 1174 25 65 0 0 chr6 77256704 77256750 -72260287 + AT_rich Low_complexity Low_complexity 1 46 0 4 1174 677 113 26 66 chr6 77257028 77257180 -72259857 + Lx3_Mus LINE L1 6864 7009 0 4 1174 183 42 0 0 chr6 77257207 77257231 -72259806 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1174 663 71 0 0 chr6 77257231 77257328 -72259709 + (GA)n Simple_repeat Simple_repeat 1 98 0 4 1174 396 174 14 0 chr6 77257354 77257423 -72259614 - B3A SINE B2 -126 72 3 4 1174 672 317 6 6 chr6 77257772 77257953 -72259084 + B3A SINE B2 2 182 -16 4 1174 2266 219 108 10 chr6 77258895 77259740 -72257297 + Lx9 LINE L1 6573 7643 -1 4 1174 566 301 29 40 chr6 77260005 77260282 -72256755 + B4A SINE B4 2 275 -17 4 1174 303 130 0 0 chr6 77260449 77260503 -72256534 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 4 1174 1451 219 63 89 chr6 77260825 77261062 -72255975 + RMER4A LTR ERVK 17 265 -201 4 1174 431 0 0 36 chr6 77261062 77261118 -72255919 + (CTG)n Simple_repeat Simple_repeat 3 56 0 4 1174 1451 219 63 89 chr6 77261118 77261342 -72255695 + RMER4A LTR ERVK 266 466 0 4 1174 258 255 135 47 chr6 77261422 77261787 -72255250 + L1MB8 LINE L1 5631 6012 -166 4 1174 630 307 18 60 chr6 77261950 77262234 -72254803 - B4A SINE B4 -18 274 3 4 1174 1524 220 54 14 chr6 77263463 77263832 -72253205 + ORR1C2 LTR MaLR 1 384 0 4 1174 351 0 0 0 chr6 77263943 77263982 -72253055 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1174 257 247 73 115 chr6 77266044 77266140 -72250897 + PB1D9 SINE Alu 15 106 -14 4 1174 249 33 0 0 chr6 77266142 77266172 -72250865 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 4 1174 1104 294 116 17 chr6 77266183 77266605 -72250432 - MT2A LTR ERVL -8 525 62 4 1174 447 258 0 0 chr6 77266610 77266703 -72250334 - MTE2b LTR MaLR -282 97 5 4 1174 239 0 32 0 chr6 77267269 77267300 -72249737 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1174 512 312 22 76 chr6 77267305 77267489 -72249548 - B4 SINE B4 0 292 119 4 1174 4428 54 2 0 chr6 77268155 77268695 -72248342 + L1_Mus1 LINE L1 6025 6565 -2 4 1174 297 203 162 0 chr6 77269590 77269664 -72247373 + Helitron3Na_Mam RC Helitron 9 94 -392 4 1174 993 299 142 36 chr6 77269934 77270405 -72246632 - MT2A LTR ERVL -1 532 12 4 1174 838 274 74 44 chr6 77270966 77271371 -72245666 + RMER5 LTR ERV1 47 463 -71 4 1174 1078 261 48 31 chr6 77271415 77271707 -72245330 + MTE2b LTR MaLR 74 370 -9 4 1174 675 338 54 61 chr6 77272435 77272842 -72244195 + MER21B LTR ERV1 432 835 -28 4 1174 256 208 0 0 chr6 77273071 77273124 -72243913 - Lx3B LINE L1 0 6973 6921 4 1174 1176 116 30 20 chr6 77273351 77273554 -72243483 - Lx LINE L1 -7 6647 6443 4 1174 952 139 6 6 chr6 77273741 77273914 -72243123 + CT-rich Low_complexity Low_complexity 3 175 0 4 1174 300 53 0 0 chr6 77273913 77273951 -72243086 + (TCCCC)n Simple_repeat Simple_repeat 3 40 0 4 1174 669 73 0 0 chr6 77273951 77274047 -72242990 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 5 1174 1072 274 47 41 chr6 77275462 77275862 -72241175 - MTE2a LTR MaLR 0 419 1 5 1174 15848 21 0 0 chr6 77276168 77278685 -72238352 - L1Md_T LINE L1 0 6582 4066 5 1174 21 0 0 0 chr6 77279814 77279835 -72237202 + AT_rich Low_complexity Low_complexity 1 21 0 5 1174 748 292 58 68 chr6 77280400 77280709 -72236328 + MTE2b LTR MaLR 74 379 0 5 1174 689 291 0 6 chr6 77280709 77280868 -72236169 - ID_B1 SINE B4 -66 158 1 5 1174 4995 131 21 25 chr6 77280870 77281674 -72235363 - Lx LINE L1 -3 6651 5851 5 1174 1860 150 9 12 chr6 77282722 77283046 -72233991 - Lx3B LINE L1 -4 6969 6647 5 1174 263 348 0 18 chr6 77283167 77283281 -72233756 + MER57A-int LTR ERV1 5804 5915 -272 5 1174 548 287 8 0 chr6 77283715 77283837 -72233200 - ID_B1 SINE B4 -3 221 99 5 1174 463 246 64 43 chr6 77283837 77283855 -72233182 - B1F SINE Alu -2 147 5 5 1174 5206 71 11 19 chr6 77283875 77284595 -72232442 - L1_Mus2 LINE L1 0 6566 5853 5 1174 28 0 0 0 chr6 77284697 77284725 -72232312 + AT_rich Low_complexity Low_complexity 1 28 0 5 1174 789 294 22 92 chr6 77284794 77285154 -72231883 + MER47A DNA MER2_type 28 362 -4 5 1174 226 279 42 42 chr6 77285383 77285454 -72231583 + MIR3 SINE MIR 15 85 -123 5 1174 663 283 135 46 chr6 77285494 77285820 -72231217 + ORR1E LTR MaLR 1 355 -4 5 1174 27 49 0 0 chr6 77285876 77285917 -72231120 + AT_rich Low_complexity Low_complexity 1 41 0 5 1174 2841 40 0 3 chr6 77286676 77287024 -72230013 + L1Md_F3 LINE L1 6224 6570 -14 5 1174 360 0 0 0 chr6 77287491 77287531 -72229506 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1174 519 148 0 0 chr6 77287545 77287633 -72229404 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 1174 576 169 88 0 chr6 77288461 77288609 -72228428 - Lx9 LINE L1 -1 7643 7483 5 1174 539 263 15 0 chr6 77288606 77288739 -72228298 - Lx9 LINE L1 -451 7193 7059 5 1174 1339 198 253 25 chr6 77288849 77289212 -72227825 - RLTR41 LTR ERV1 0 446 1 5 1174 1267 284 34 79 chr6 77290611 77291165 -72225872 + RMER5 LTR ERV1 1 529 -5 5 1174 286 287 8 76 chr6 77292307 77292439 -72224598 - MIRb SINE MIR -49 219 97 5 1174 226 289 12 3 chr6 77293134 77293205 -72223832 - MIR SINE MIR -93 175 95 5 1174 318 259 186 30 chr6 77293522 77293689 -72223348 - MLT1A0 LTR MaLR -2 363 171 5 1174 454 194 31 0 chr6 77293737 77293835 -72223202 + Lx6 LINE L1 6887 6987 -473 5 1174 279 173 0 0 chr6 77293837 77293889 -72223148 + Lx6 LINE L1 7199 7250 -210 5 1174 545 322 7 0 chr6 77294275 77294421 -72222616 + RSINE1 SINE B4 2 148 -17 5 1174 494 359 72 14 chr6 77294768 77295127 -72221910 + LTR82A LTR ERVL 249 628 -244 5 1174 656 98 0 10 chr6 77295217 77295320 -72221717 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 5 1174 239 283 192 37 chr6 77295442 77295629 -72221408 - B3 SINE B2 0 216 1 5 1174 538 59 47 0 chr6 77295658 77295743 -72221294 + L1_Mus3 LINE L1 6550 6638 0 5 1174 26 0 0 0 chr6 77295799 77295825 -72221212 + AT_rich Low_complexity Low_complexity 1 26 0 5 1174 213 295 115 9 chr6 77296661 77296774 -72220263 - MIRm SINE MIR -117 159 35 5 1174 199 0 65 0 chr6 77296884 77296915 -72220122 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1174 207 0 0 0 chr6 77297476 77297499 -72219538 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1174 189 0 0 0 chr6 77298005 77298026 -72219011 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1174 251 333 19 39 chr6 77299087 77299190 -72217847 + L2b LINE L2 3125 3225 -150 5 1174 227 111 36 36 chr6 77299243 77299299 -72217738 + T-rich Low_complexity Low_complexity 5 60 0 5 1174 620 102 10 0 chr6 77302260 77302358 -72214679 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 5 1174 756 195 7 26 chr6 77303514 77303667 -72213370 + B1_Mur4 SINE Alu 1 150 0 5 1174 190 192 36 55 chr6 77305131 77305186 -72211851 - MIRm SINE MIR -139 137 84 5 1174 868 173 97 0 chr6 77305589 77305774 -72211263 + Lx2B LINE L1 6795 6997 -3 5 1174 25 0 0 0 chr6 77307370 77307395 -72209642 + AT_rich Low_complexity Low_complexity 1 25 0 5 1174 408 309 94 70 chr6 77307639 77307938 -72209099 + MER2 DNA MER2_type 31 336 -9 5 1174 453 306 36 7 chr6 77309070 77309208 -72207829 + RSINE1 SINE B4 2 143 -22 5 1174 269 288 0 0 chr6 77309868 77309941 -72207096 - ID4_ SINE ID -10 73 1 5 1174 282 315 33 0 chr6 77310651 77310743 -72206294 + MLT1F2 LTR MaLR 15 109 -451 5 1174 256 396 7 0 chr6 77311038 77311182 -72205855 + ID_B1 SINE B4 80 224 0 5 1174 222 111 0 73 chr6 77311201 77311269 -72205768 + (CAAA)n Simple_repeat Simple_repeat 3 65 0 5 1174 243 0 0 0 chr6 77311315 77311342 -72205695 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1174 253 240 24 6 chr6 77311695 77311800 -72205237 + A-rich Low_complexity Low_complexity 1 106 0 5 1174 27 29 0 0 chr6 77312089 77312123 -72204914 + AT_rich Low_complexity Low_complexity 1 34 0 5 1174 649 257 7 0 chr6 77312123 77312263 -72204774 - B1_Mus2 SINE Alu -6 141 1 5 1174 631 307 9 41 chr6 77312791 77313012 -72204025 - B3 SINE B2 -1 215 2 5 1174 183 80 0 0 chr6 77313042 77313067 -72203970 + (CAT)n Simple_repeat Simple_repeat 2 26 0 5 1174 216 97 0 0 chr6 77313067 77313097 -72203940 + (TAG)n Simple_repeat Simple_repeat 2 32 0 5 1174 222 325 12 36 chr6 77313238 77313321 -72203716 + ID4_ SINE ID 2 82 -1 5 1174 324 330 105 19 chr6 77313345 77313450 -72203587 + B4A SINE B4 1 114 -178 5 1174 216 184 0 0 chr6 77313653 77313702 -72203335 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1174 21 36 0 0 chr6 77313841 77313869 -72203168 + AT_rich Low_complexity Low_complexity 1 28 0 5 1174 523 291 89 6 chr6 77314784 77314944 -72202093 + ID_B1 SINE B4 47 215 -9 5 1174 248 167 50 0 chr6 77314944 77315004 -72202033 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1174 308 299 62 0 chr6 77315258 77315355 -72201682 + PB1D10 SINE Alu 3 105 -12 5 1174 6105 29 4 3 chr6 77316693 77317413 -72199624 + MERVL-int LTR ERVL 4651 5371 -114 5 1174 306 167 26 53 chr6 77317413 77317489 -72199548 + ORR1A3-int LTR MaLR 567 640 -1323 5 1174 2190 108 18 12 chr6 77317497 77317826 -72199211 - RMER16-int LTR ERVK -378 5028 4698 5 1174 682 267 61 35 chr6 77317827 77318025 -72199012 - ORR1E LTR MaLR -156 203 1 5 1174 303 299 69 89 chr6 77318425 77318627 -72198410 + LTR41 LTR ERVL 19 216 -552 5 1174 321 300 63 50 chr6 77318625 77318815 -72198222 + MLT1C LTR MaLR 206 461 -6 5 1174 606 274 30 59 chr6 77319330 77319532 -72197505 - B3A SINE B2 0 198 3 5 1174 485 356 37 28 chr6 77320383 77320597 -72196440 + Tigger5 DNA MER2_type 4 219 -2187 5 1174 510 61 0 0 chr6 77322428 77322494 -72194543 + (TAA)n Simple_repeat Simple_repeat 2 67 0 5 1174 279 327 28 37 chr6 77322538 77322646 -72194391 + B4 SINE B4 1 107 -185 5 1174 270 0 0 0 chr6 77322668 77322698 -72194339 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1174 279 0 0 0 chr6 77322698 77322728 -72194309 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 1174 711 112 0 0 chr6 77322765 77322899 -72194138 + (CA)n Simple_repeat Simple_repeat 2 135 0 5 1174 195 42 0 0 chr6 77322899 77322923 -72194114 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1174 576 40 0 0 chr6 77322974 77323049 -72193988 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1174 291 140 0 0 chr6 77323058 77323108 -72193929 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1174 364 382 21 47 chr6 77323260 77323496 -72193541 - MIRb SINE MIR -8 260 31 5 1174 238 338 97 7 chr6 77323611 77323766 -72193271 + Lx7 LINE L1 6927 7095 -601 5 1174 449 320 12 25 chr6 77323883 77324043 -72192994 + RMER15 LTR ERVL 404 561 -14 5 1174 562 362 47 4 chr6 77324708 77324944 -72192093 - MER21B LTR ERV1 -465 398 153 5 1174 256 318 53 35 chr6 77325260 77325374 -72191663 + L1MDa LINE L1 420 535 -6098 5 1174 360 321 0 118 chr6 77325568 77325621 -72191416 + B3A SINE B2 8 47 -151 5 1174 1608 42 0 0 chr6 77325621 77325813 -72191224 + B2_Mm1t SINE B2 1 192 -1 5 1174 360 321 0 118 chr6 77325813 77325886 -72191151 + B3A SINE B2 48 119 -79 5 1174 297 0 0 0 chr6 77325924 77325957 -72191080 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1174 414 0 0 0 chr6 77325958 77326004 -72191033 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1174 252 0 0 0 chr6 77326202 77326230 -72190807 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1174 732 86 0 0 chr6 77326231 77326336 -72190701 + (TATG)n Simple_repeat Simple_repeat 2 106 0 5 1174 363 277 0 107 chr6 77326342 77326471 -72190566 - B3 SINE B2 -55 143 30 5 1174 198 0 0 0 chr6 77327461 77327483 -72189554 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1174 792 257 21 48 chr6 77328453 77328789 -72188248 - L1_Mur3 LINE L1 -1453 4687 4362 5 1174 439 309 71 10 chr6 77330007 77330203 -72186834 + Charlie1a DNA MER1_type 1096 1303 -152 5 1174 287 284 0 80 chr6 77330255 77330343 -72186694 - PB1D7 SINE Alu -30 90 10 5 1174 22 0 0 0 chr6 77330363 77330385 -72186652 + AT_rich Low_complexity Low_complexity 1 22 0 5 1174 360 0 0 0 chr6 77331011 77331051 -72185986 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1174 450 0 0 0 chr6 77331051 77331100 -72185937 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1174 198 344 21 10 chr6 77331216 77331313 -72185724 - MIR SINE MIR -71 191 94 5 1175 369 189 9 0 chr6 77332922 77333042 -72183995 + (CA)n Simple_repeat Simple_repeat 1 121 0 6 1175 252 321 162 64 chr6 77333283 77333456 -72183581 + RMER15 LTR ERVL 385 574 -1 6 1175 487 297 14 0 chr6 77334522 77334660 -72182377 + RMER15 LTR ERVL 422 561 -14 6 1175 200 143 48 0 chr6 77335700 77335742 -72181295 + GA-rich Low_complexity Low_complexity 5 48 0 6 1175 716 246 73 25 chr6 77336111 77336315 -72180722 + B3 SINE B2 1 214 -2 6 1175 336 287 138 0 chr6 77336350 77336437 -72180600 + B1F SINE Alu 3 101 -48 6 1175 187 177 12 12 chr6 77336946 77336968 -72180069 + T-rich Low_complexity Low_complexity 60 81 0 6 1175 297 0 0 0 chr6 77336968 77337001 -72180036 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1175 187 177 12 12 chr6 77337001 77337058 -72179979 + T-rich Low_complexity Low_complexity 3 59 0 6 1175 1190 68 0 0 chr6 77337063 77337209 -72179828 - B1_Mm SINE Alu 0 147 2 6 1175 1813 319 72 23 chr6 77337665 77338577 -72178460 + Lx8 LINE L1 6276 7232 -241 6 1175 306 337 11 0 chr6 77338577 77338672 -72178365 + RMER15 LTR ERVL 371 466 -109 6 1175 606 71 0 0 chr6 77338674 77338758 -72178279 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 1175 351 0 0 0 chr6 77338993 77339032 -72178005 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1175 316 283 115 48 chr6 77339032 77339136 -72177901 - RSINE1 SINE B4 -40 125 15 6 1175 32 0 0 0 chr6 77340466 77340498 -72176539 + AT_rich Low_complexity Low_complexity 1 32 0 6 1175 399 351 36 12 chr6 77341772 77341939 -72175098 + MER20 DNA MER1_type 34 204 -15 6 1175 582 183 0 0 chr6 77342027 77342142 -72174895 + GA-rich Low_complexity Low_complexity 4 118 0 6 1175 405 0 0 0 chr6 77343289 77343334 -72173703 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1175 576 65 0 0 chr6 77343334 77343410 -72173627 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1175 255 256 33 41 chr6 77343786 77343841 -72173196 - Lx9 LINE L1 -9 7635 7581 6 1175 1006 192 51 5 chr6 77343841 77344055 -72172982 - URR1B DNA MER1_type 0 225 2 6 1175 255 256 33 41 chr6 77344055 77344121 -72172916 - Lx9 LINE L1 -64 7580 7516 6 1175 444 135 0 0 chr6 77344121 77344195 -72172842 + (TTG)n Simple_repeat Simple_repeat 1 74 0 6 1175 423 0 0 0 chr6 77344193 77344240 -72172797 + (TGG)n Simple_repeat Simple_repeat 1 47 0 6 1175 1055 191 85 8 chr6 77344248 77344506 -72172531 - Lx9 LINE L1 -165 7479 7202 6 1175 25 0 0 0 chr6 77346964 77346989 -72170048 + AT_rich Low_complexity Low_complexity 1 25 0 6 1175 243 79 0 0 chr6 77347021 77347059 -72169978 + (CAAAAA)n Simple_repeat Simple_repeat 6 43 0 6 1175 351 0 0 0 chr6 77347237 77347276 -72169761 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1175 180 77 0 0 chr6 77348186 77348212 -72168825 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 6 1175 1138 78 0 0 chr6 77348226 77348367 -72168670 - B1_Mus1 SINE Alu -7 141 1 6 1175 196 282 168 66 chr6 77348616 77348783 -72168254 - L3 LINE CR1 -4265 224 41 6 1175 272 301 26 55 chr6 77349695 77349837 -72167200 - MIRb SINE MIR 0 262 126 6 1175 228 207 52 0 chr6 77350049 77350107 -72166930 + LTR37A LTR ERV1 358 418 -8 6 1175 1253 238 82 47 chr6 77350378 77350760 -72166277 - MTE2a LTR MaLR -14 405 18 6 1175 670 308 102 20 chr6 77351184 77351429 -72165608 - B4A SINE B4 -4 288 24 6 1175 1066 36 0 14 chr6 77351451 77351592 -72165445 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 6 1175 348 217 22 82 chr6 77352215 77352339 -72164698 + RMER17D2 LTR ERVK 236 353 -456 6 1175 1275 89 0 0 chr6 77352339 77352518 -72164519 + (TTC)n Simple_repeat Simple_repeat 1 179 0 6 1175 348 217 22 82 chr6 77352518 77352575 -72164462 + RMER17D2 LTR ERVK 354 406 -403 6 1175 1284 79 0 0 chr6 77352575 77352753 -72164284 + (TTC)n Simple_repeat Simple_repeat 3 180 0 6 1175 348 217 22 82 chr6 77352753 77352801 -72164236 + RMER17D2 LTR ERVK 407 452 -357 6 1175 270 0 0 0 chr6 77352803 77352833 -72164204 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1175 204 67 0 0 chr6 77354194 77354224 -72162813 + (TTA)n Simple_repeat Simple_repeat 3 32 0 6 1175 387 0 0 0 chr6 77354951 77354994 -72162043 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1175 541 311 14 22 chr6 77355401 77355539 -72161498 - RSINE1 SINE B4 0 165 29 6 1175 207 152 0 0 chr6 77356132 77356178 -72160859 + A-rich Low_complexity Low_complexity 1 46 0 6 1175 1050 271 89 23 chr6 77356290 77356637 -72160400 + ORR1D2 LTR MaLR 1 370 0 6 1175 931 284 55 18 chr6 77356734 77357007 -72160030 + B4A SINE B4 8 290 -2 6 1175 189 0 0 0 chr6 77357556 77357577 -72159460 + (TTG)n Simple_repeat Simple_repeat 1 21 0 6 1175 795 340 65 21 chr6 77357577 77357913 -72159124 - MTD LTR MaLR -49 370 20 6 1175 882 265 17 103 chr6 77357935 77358225 -72158812 + ORR1E LTR MaLR 90 354 -5 6 1175 281 379 14 77 chr6 77359121 77359187 -72157850 + B4 SINE B4 19 86 -206 6 1175 255 31 0 0 chr6 77359187 77359219 -72157818 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1175 281 379 14 77 chr6 77359219 77359295 -72157742 + B4 SINE B4 87 152 -140 6 1175 21 0 0 0 chr6 77359447 77359468 -72157569 + AT_rich Low_complexity Low_complexity 1 21 0 6 1175 1766 183 15 38 chr6 77360858 77361199 -72155838 - ORR1B1 LTR MaLR -60 334 2 6 1175 357 291 23 23 chr6 77361517 77361605 -72155432 - MIRc SINE MIR -140 128 41 6 1175 242 313 10 48 chr6 77361620 77361634 -72155403 - ID_B1 SINE B4 -4 220 121 6 1175 375 267 22 0 chr6 77361634 77361724 -72155313 - B1_Mur1 SINE Alu -18 131 40 6 1175 653 238 0 16 chr6 77364470 77364598 -72152439 + B1_Mus1 SINE Alu 10 135 -13 6 1175 203 0 37 0 chr6 77364598 77364625 -72152412 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1175 589 316 147 16 chr6 77366329 77366398 -72150639 - MTEb LTR MaLR -95 284 218 6 1175 666 0 0 0 chr6 77366398 77366472 -72150565 + (GA)n Simple_repeat Simple_repeat 2 75 0 6 1175 589 316 147 16 chr6 77366472 77366653 -72150384 - MTEb LTR MaLR -162 217 3 6 1175 328 324 115 78 chr6 77366723 77366914 -72150123 - B3A SINE B2 0 198 1 6 1175 770 292 123 9 chr6 77367905 77368237 -72148800 - ORR1D2 LTR MaLR 0 370 1 6 1175 24 0 0 0 chr6 77368742 77368766 -72148271 + AT_rich Low_complexity Low_complexity 1 24 0 6 1175 537 271 42 0 chr6 77368768 77368886 -72148151 - B3 SINE B2 -8 208 86 6 1175 234 184 0 0 chr6 77369282 77369331 -72147706 + T-rich Low_complexity Low_complexity 1 49 0 6 1175 486 254 197 55 chr6 77370595 77370750 -72146287 + B3 SINE B2 2 182 -34 6 1175 545 64 13 0 chr6 77370750 77370828 -72146209 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 1175 486 254 197 55 chr6 77370828 77370855 -72146182 + B3 SINE B2 183 210 -6 6 1175 748 316 5 0 chr6 77370933 77371139 -72145898 + ID_B1 SINE B4 2 208 -16 6 1175 1003 214 16 0 chr6 77371718 77371905 -72145132 - MER58A DNA MER1_type -16 208 19 6 1175 396 272 38 19 chr6 77372367 77372472 -72144565 - B1F1 SINE Alu -2 147 41 6 1175 308 186 68 0 chr6 77373172 77373231 -72143806 - ORR1E LTR MaLR -269 90 28 6 1175 1108 318 34 20 chr6 77373607 77373957 -72143080 - ORR1D2 LTR MaLR -10 360 6 6 1175 247 261 15 30 chr6 77374365 77374432 -72142605 - ORR1E LTR MaLR -293 66 1 6 1175 210 220 0 0 chr6 77374724 77374783 -72142254 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1175 290 307 96 59 chr6 77375821 77376008 -72141029 + MER117 DNA MER1_type 4 197 0 6 1175 328 359 34 27 chr6 77376105 77376251 -72140786 + B1F SINE Alu 1 148 -1 6 1175 420 42 42 0 chr6 77376482 77376553 -72140484 + (TTTG)n Simple_repeat Simple_repeat 2 75 0 6 1175 396 59 0 0 chr6 77376560 77376611 -72140426 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 6 1175 198 71 0 0 chr6 77376612 77376640 -72140397 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 1175 1155 95 0 0 chr6 77376659 77376806 -72140231 - B1_Mus2 SINE Alu 0 147 1 6 1175 1202 265 44 72 chr6 77377416 77377806 -72139231 + MTE2b LTR MaLR 1 379 0 6 1175 810 73 0 0 chr6 77377975 77378085 -72138952 + (TTTC)n Simple_repeat Simple_repeat 4 113 0 6 1175 2020 87 29 16 chr6 77378119 77378433 -72138604 - L1_Mus4 LINE L1 -2 6634 6317 6 1175 678 85 0 0 chr6 77378564 77378658 -72138379 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 6 1175 689 228 27 7 chr6 77378686 77378832 -72138205 - B1_Mur4 SINE Alu -1 149 1 6 1175 668 259 76 6 chr6 77379533 77379704 -72137333 - B3A SINE B2 -15 183 1 6 1175 651 314 46 10 chr6 77380424 77380620 -72136417 + MLT1B LTR MaLR 188 390 0 6 1175 713 312 22 25 chr6 77381303 77381579 -72135458 + B4A SINE B4 1 275 -17 6 1175 724 307 5 0 chr6 77382516 77382718 -72134319 - ID_B1 SINE B4 -18 206 4 6 1175 249 349 50 28 chr6 77383900 77384080 -72132957 - L3 LINE CR1 -298 4191 4008 6 1175 351 0 0 0 chr6 77384824 77384863 -72132174 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1175 387 0 0 0 chr6 77384863 77384905 -72132132 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1175 406 330 9 35 chr6 77384907 77385020 -72132017 - RSINE1 SINE B4 -53 112 3 6 1175 1005 312 129 14 chr6 77386030 77386615 -72130422 + Lx8 LINE L1 6654 7332 -141 6 1175 786 89 0 0 chr6 77386615 77386727 -72130310 + (CA)n Simple_repeat Simple_repeat 1 112 0 6 1175 1005 314 143 10 chr6 77386727 77386837 -72130200 + Lx8 LINE L1 7333 7466 -7 6 1175 540 329 6 18 chr6 77387587 77387751 -72129286 - RSINE1 SINE B4 0 165 4 6 1175 375 23 0 0 chr6 77388370 77388414 -72128623 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 6 1175 577 255 142 46 chr6 77389705 77389902 -72127135 + B3 SINE B2 1 216 0 6 1175 252 0 0 0 chr6 77389993 77390021 -72127016 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 1175 600 90 35 18 chr6 77392037 77392150 -72124887 + (CATA)n Simple_repeat Simple_repeat 2 116 0 6 1175 1770 279 11 18 chr6 77392152 77392604 -72124433 - MT2A LTR ERVL -74 459 11 6 1175 399 320 65 30 chr6 77392664 77392921 -72124116 - L1MC LINE L1 -1251 4895 4631 6 1175 860 277 71 24 chr6 77393181 77393521 -72123516 + ORR1E LTR MaLR 4 359 0 7 1175 245 250 125 0 chr6 77395263 77395327 -72121710 + B4 SINE B4 1 72 -220 7 1175 626 47 0 11 chr6 77395553 77395591 -72121446 + (GAA)n Simple_repeat Simple_repeat 2 39 0 7 1175 1230 100 0 0 chr6 77395591 77395771 -72121266 + (GGA)n Simple_repeat Simple_repeat 1 180 0 7 1175 626 47 0 11 chr6 77395771 77395819 -72121218 + (GAA)n Simple_repeat Simple_repeat 1 48 0 7 1175 280 297 20 10 chr6 77396399 77396501 -72120536 + LTR55 LTR ERV 70 172 -376 7 1175 527 0 16 0 chr6 77397645 77397708 -72119329 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1175 295 301 139 13 chr6 77397924 77398082 -72118955 + MLT1D LTR MaLR 16 193 -312 7 1175 712 261 11 28 chr6 77398186 77398367 -72118670 - B3A SINE B2 0 198 21 7 1175 818 292 55 64 chr6 77398698 77399414 -72117623 + ERVL-int LTR ERVL 5042 5750 -7 7 1175 673 290 0 0 chr6 77399570 77399708 -72117329 - RSINE1 SINE B4 -25 140 3 7 1175 513 304 50 12 chr6 77399721 77399881 -72117156 + MLT2B2 LTR ERVL 3 168 -347 7 1175 246 32 0 0 chr6 77399975 77400006 -72117031 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1175 306 0 0 0 chr6 77400006 77400039 -72116998 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1175 248 296 30 30 chr6 77401058 77401159 -72115878 - MLT1G3 LTR MaLR -315 280 180 7 1175 637 262 140 35 chr6 77401419 77401818 -72115219 - L1MA8 LINE L1 -44 6247 5807 7 1175 3487 88 45 0 chr6 77401817 77402327 -72114710 + Lx3_Mus LINE L1 6314 6846 -163 7 1175 278 270 94 8 chr6 77402596 77402723 -72114314 - L1MA8 LINE L1 -735 5556 5419 7 1175 380 304 33 19 chr6 77402737 77402948 -72114089 - L1MA8 LINE L1 -771 5372 5159 7 1175 1251 255 115 3 chr6 77404139 77404498 -72112539 + MTD LTR MaLR 14 405 -14 7 1175 365 294 35 62 chr6 77404824 77404969 -72112068 - B4A SINE B4 -150 142 2 7 1175 412 212 0 0 chr6 77406327 77406407 -72110630 - L1VL2 LINE L1 -6177 158 79 7 1175 3321 131 21 9 chr6 77406408 77406938 -72110099 + Lx LINE L1 6108 6643 -11 7 1175 315 0 0 0 chr6 77406938 77406973 -72110064 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 7 1175 1263 94 0 0 chr6 77406973 77407153 -72109884 + (GA)n Simple_repeat Simple_repeat 1 180 0 7 1175 318 26 0 0 chr6 77407155 77407194 -72109843 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 7 1175 785 239 31 0 chr6 77407475 77407634 -72109403 - B3 SINE B2 -52 164 1 7 1175 21 71 0 0 chr6 77410377 77410419 -72106618 + AT_rich Low_complexity Low_complexity 1 42 0 7 1175 3036 68 2 12 chr6 77410557 77410957 -72106080 + MTA_Mm LTR MaLR 1 396 0 7 1175 1363 265 36 12 chr6 77410970 77411383 -72105654 - Lx8 LINE L1 -144 7329 6907 7 1175 367 379 59 20 chr6 77411427 77411680 -72105357 + MLT1J LTR MaLR 66 328 -184 7 1175 366 23 0 0 chr6 77412230 77412273 -72104764 + (TAA)n Simple_repeat Simple_repeat 1 43 0 7 1175 248 139 0 0 chr6 77413825 77413868 -72103169 + U2 snRNA snRNA 17 59 -129 7 1175 1308 130 145 22 chr6 77414652 77414928 -72102109 + Lx2 LINE L1 6688 6997 0 7 1175 588 335 24 29 chr6 77414956 77415165 -72101872 + B4 SINE B4 20 227 -65 7 1175 230 263 17 17 chr6 77415209 77415267 -72101770 + RSINE1 SINE B4 108 165 0 7 1175 450 0 0 0 chr6 77415271 77415321 -72101716 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1175 5150 78 23 7 chr6 77415416 77416114 -72100923 - L1Md_F2 LINE L1 -12 6570 5862 7 1175 342 0 0 0 chr6 77417125 77417163 -72099874 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 7 1175 202 182 0 0 chr6 77417322 77417355 -72099682 + polypurine Low_complexity Low_complexity 4 36 0 7 1175 326 271 0 0 chr6 77417733 77417803 -72099234 + RMER30 DNA MER1_type 20 89 -113 7 1175 201 147 0 0 chr6 77417813 77417847 -72099190 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1175 255 306 65 0 chr6 77418019 77418081 -72098956 - Charlie12 DNA MER1_type -2801 72 7 7 1175 450 283 7 14 chr6 77419205 77419352 -72097685 + MER53 DNA hAT 25 170 -23 7 1175 538 277 138 41 chr6 77419353 77419549 -72097488 + ID_B1 SINE B4 5 219 -5 7 1175 204 225 0 0 chr6 77419617 77419657 -72097380 + (TTCTG)n Simple_repeat Simple_repeat 1 40 0 7 1175 606 140 0 0 chr6 77419658 77419758 -72097279 + (CATCC)n Simple_repeat Simple_repeat 4 103 0 7 1175 417 284 41 58 chr6 77420725 77420897 -72096140 + MER20 DNA MER1_type 7 175 -44 7 1175 430 301 29 29 chr6 77421139 77421276 -72095761 - B1F SINE Alu -1 148 12 7 1175 394 321 22 0 chr6 77421466 77421650 -72095387 + L1MB7 LINE L1 5935 6122 -62 7 1175 207 0 0 0 chr6 77422148 77422171 -72094866 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1175 864 305 88 23 chr6 77422445 77422797 -72094240 + MTEa LTR MaLR 5 379 0 7 1175 26 30 0 0 chr6 77423992 77424025 -72093012 + AT_rich Low_complexity Low_complexity 1 33 0 7 1175 419 118 13 0 chr6 77424127 77424203 -72092834 + (CA)n Simple_repeat Simple_repeat 2 78 0 7 1175 468 286 32 80 chr6 77424203 77424515 -72092522 - Lx9 LINE L1 -173 7471 7175 7 1175 606 148 0 0 chr6 77424552 77424667 -72092370 + (TA)n Simple_repeat Simple_repeat 2 116 0 7 1175 197 146 0 20 chr6 77424704 77424753 -72092284 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 7 1175 607 312 6 24 chr6 77424790 77424954 -72092083 - B3A SINE B2 -36 162 2 7 1175 271 303 70 52 chr6 77425145 77425260 -72091777 + PB1D9 SINE Alu 1 117 -3 7 1175 657 316 136 39 chr6 77425360 77425801 -72091236 + MLT1H1 LTR MaLR 68 551 -4 7 1175 771 231 13 0 chr6 77426153 77426460 -72090577 + (TG)n Simple_repeat Simple_repeat 1 311 0 7 1175 369 0 0 0 chr6 77426460 77426501 -72090536 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 1175 323 292 93 65 chr6 77426682 77426821 -72090216 - MLT1A0 LTR MaLR -221 144 2 7 1175 480 18 0 0 chr6 77427935 77427992 -72089045 + (TTTTG)n Simple_repeat Simple_repeat 1 57 0 7 1175 663 283 14 22 chr6 77428375 77428631 -72088406 - L1_Rod LINE L1 -107 5740 5501 7 1175 3170 57 0 5 chr6 77430041 77430446 -72086591 - L1Md_F2 LINE L1 -1 6581 6179 7 1175 207 139 0 0 chr6 77430569 77430605 -72086432 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1175 483 296 60 70 chr6 77430605 77430805 -72086232 - B3A SINE B2 -13 203 6 7 1175 293 202 11 35 chr6 77431210 77431297 -72085740 - L1M5 LINE L1 -433 5691 5607 7 1175 231 240 51 39 chr6 77431780 77431858 -72085179 + B4A SINE B4 208 286 -6 7 1175 761 276 33 16 chr6 77432592 77432776 -72084261 - B3 SINE B2 -27 189 3 7 1175 509 370 14 68 chr6 77432881 77433162 -72083875 - B4 SINE B4 -10 282 17 7 1175 869 147 19 0 chr6 77433276 77433433 -72083604 + URR1A DNA MER1_type 67 226 0 7 1175 186 189 0 0 chr6 77433941 77433978 -72083059 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 7 1175 5278 81 18 1 chr6 77434051 77434771 -72082266 - L1_Mus2 LINE L1 0 6566 5835 7 1175 257 169 17 0 chr6 77435062 77435121 -72081916 + CT-rich Low_complexity Low_complexity 2 61 0 7 1175 240 59 0 0 chr6 77436765 77436799 -72080238 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7 1175 359 320 51 45 chr6 77436926 77437083 -72079954 - L3 LINE CR1 -1102 3387 3230 7 1175 402 108 0 0 chr6 77437471 77437536 -72079501 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1175 27 29 0 0 chr6 77437570 77437604 -72079433 + AT_rich Low_complexity Low_complexity 1 34 0 7 1175 846 302 45 32 chr6 77437809 77438117 -72078920 - MTE2a LTR MaLR -67 312 1 7 1175 359 370 78 11 chr6 77438704 77438895 -72078142 - B4A SINE B4 -87 205 2 7 1175 501 229 19 9 chr6 77438909 77439015 -72078022 - PB1D7 SINE Alu -5 115 9 7 1175 260 325 11 11 chr6 77438941 77439028 -72078009 - B4A SINE B4 -125 167 81 7 1175 498 46 0 0 chr6 77439926 77439991 -72077046 + (TA)n Simple_repeat Simple_repeat 1 65 0 7 1175 21 71 0 0 chr6 77440021 77440063 -72076974 + AT_rich Low_complexity Low_complexity 1 42 0 7 1175 629 287 34 11 chr6 77440110 77440286 -72076751 + B3A SINE B2 2 181 -17 7 1175 779 266 47 25 chr6 77441743 77442017 -72075020 - MLT1D LTR MaLR -12 493 214 7 1175 228 167 0 0 chr6 77442045 77442093 -72074944 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1175 220 382 127 25 chr6 77442898 77443212 -72073825 + L2 LINE L2 2724 3069 -350 7 1175 500 302 18 55 chr6 77443330 77443547 -72073490 - ID_B1 SINE B4 -14 210 2 7 1175 273 229 83 28 chr6 77443635 77443707 -72073330 - ID4_ SINE ID -6 77 2 7 1175 503 302 105 11 chr6 77444571 77444762 -72072275 + ORR1D2 LTR MaLR 135 343 -27 7 1175 368 264 20 20 chr6 77445153 77445304 -72071733 + L1MA4 LINE L1 5758 5908 -392 7 1175 261 233 41 0 chr6 77445309 77445382 -72071655 + (TATG)n Simple_repeat Simple_repeat 3 78 0 7 1175 623 291 30 25 chr6 77445601 77445802 -72071235 + B3 SINE B2 2 203 -13 7 1175 198 0 0 0 chr6 77445893 77445915 -72071122 + (CG)n Simple_repeat Simple_repeat 1 22 0 7 1175 312 27 0 0 chr6 77445915 77445951 -72071086 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1175 313 343 14 20 chr6 77445954 77446100 -72070937 - RSINE1 SINE B4 -17 148 4 7 1175 205 169 17 17 chr6 77446450 77446510 -72070527 + (TATAA)n Simple_repeat Simple_repeat 1 60 0 7 1175 1070 296 60 42 chr6 77448040 77448522 -72068515 + RMER5 LTR ERV1 44 534 0 7 1175 218 295 50 40 chr6 77448610 77448709 -72068328 + B4A SINE B4 6 105 -187 7 1175 28 29 0 0 chr6 77449058 77449093 -72067944 + AT_rich Low_complexity Low_complexity 1 35 0 7 1175 539 335 20 40 chr6 77449461 77449663 -72067374 + B3A SINE B2 1 198 0 8 1175 289 348 22 0 chr6 77450627 77450716 -72066321 - B4 SINE B4 0 292 202 8 1175 531 295 77 0 chr6 77450811 77450994 -72066043 - B3A SINE B2 -1 197 1 8 1175 362 315 128 31 chr6 77451166 77451325 -72065712 - MER63A DNA AcHobo -61 149 5 8 1175 184 312 92 20 chr6 77452072 77452170 -72064867 + MER5B DNA MER1_type 20 124 -54 8 1175 230 239 0 0 chr6 77452238 77452284 -72064753 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1175 420 31 0 0 chr6 77452365 77452430 -72064607 - L1_Mus3 LINE L1 0 6638 6574 8 1175 343 315 8 75 chr6 77453385 77453505 -72063532 + PB1D7 SINE Alu 6 117 -3 8 1175 256 254 0 60 chr6 77453506 77453573 -72063464 - MTEb LTR MaLR -2 377 315 8 1175 871 326 15 8 chr6 77453588 77453848 -72063189 - MTEb LTR MaLR -114 265 4 8 1175 26 0 0 0 chr6 77454055 77454081 -72062956 + AT_rich Low_complexity Low_complexity 1 26 0 8 1175 371 137 14 0 chr6 77454405 77454478 -72062559 + GA-rich Low_complexity Low_complexity 1 74 0 8 1175 500 350 48 0 chr6 77456125 77456311 -72060726 + MER58A DNA MER1_type 30 224 0 8 1175 737 307 72 17 chr6 77456947 77457182 -72059855 + B4 SINE B4 45 292 0 8 1175 733 280 42 99 chr6 77457460 77457996 -72059041 + MT2B LTR ERVL 1 561 -40 8 1175 424 277 30 15 chr6 77458298 77458430 -72058607 - Lx8 LINE L1 -662 6811 6678 8 1175 189 0 0 0 chr6 77458506 77458527 -72058510 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 1175 705 281 46 20 chr6 77458530 77458726 -72058311 - B3 SINE B2 -14 202 2 8 1175 4070 60 2 2 chr6 77459297 77459814 -72057223 - L1Md_F2 LINE L1 0 6582 6066 8 1175 243 0 0 0 chr6 77460052 77460079 -72056958 + (TC)n Simple_repeat Simple_repeat 2 28 0 8 1175 402 21 0 0 chr6 77460079 77460125 -72056912 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 1175 204 67 0 0 chr6 77460132 77460162 -72056875 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 8 1175 796 304 33 33 chr6 77460508 77460780 -72056257 - B4 SINE B4 -7 285 14 8 1175 372 22 0 0 chr6 77461010 77461055 -72055982 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1175 503 287 97 48 chr6 77462910 77463113 -72053924 - MTEa LTR MaLR -6 373 127 8 1175 329 343 115 89 chr6 77463144 77463413 -72053624 + B4 SINE B4 17 292 0 8 1175 230 258 30 0 chr6 77463414 77463480 -72053557 - MTEa LTR MaLR -291 68 1 8 1176 180 329 48 12 chr6 77463598 77463681 -72053356 - MIRb SINE MIR -68 200 115 8 1176 828 319 68 31 chr6 77465153 77465535 -72051502 - MTD LTR MaLR -11 408 13 8 1176 1390 229 76 20 chr6 77466080 77466437 -72050600 + ORR1C1 LTR MaLR 1 377 -1 8 1176 216 24 0 68 chr6 77466462 77466506 -72050531 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 8 1176 733 349 4 8 chr6 77467374 77467611 -72049426 - B4A SINE B4 -46 246 11 8 1176 290 372 97 0 chr6 77469360 77469607 -72047430 - B4A SINE B4 -18 274 4 8 1176 262 200 27 41 chr6 77470041 77470114 -72046923 + (TGAA)n Simple_repeat Simple_repeat 4 75 0 8 1176 786 268 33 24 chr6 77470334 77470544 -72046493 + B3 SINE B2 4 215 -1 8 1176 382 341 81 77 chr6 77470719 77470941 -72046096 + B4 SINE B4 64 286 -6 8 1176 1309 12 6 6 chr6 77472140 77472302 -72044735 + L1Md_A LINE L1 6420 6581 -1 8 1176 327 49 0 0 chr6 77472916 77472957 -72044080 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 8 1176 799 280 80 0 chr6 77473247 77473422 -72043615 + ID_B1 SINE B4 1 189 -35 8 1176 203 236 0 14 chr6 77473741 77473814 -72043223 + GA-rich Low_complexity Low_complexity 2 73 0 8 1176 486 75 0 0 chr6 77474011 77474078 -72042959 + (TG)n Simple_repeat Simple_repeat 1 67 0 8 1176 542 245 93 52 chr6 77474079 77474251 -72042786 - B3A SINE B2 -19 179 1 8 1176 512 308 25 4 chr6 77474266 77474504 -72042533 - L1MA4 LINE L1 -14 6286 6044 8 1176 835 309 67 34 chr6 77476677 77476975 -72040062 + MTEa LTR MaLR 5 312 -67 8 1176 258 138 0 0 chr6 77476975 77477033 -72040004 + (A)n Simple_repeat Simple_repeat 1 58 0 8 1176 218 246 0 15 chr6 77477125 77477191 -72039846 - PB1D10 SINE Alu 0 117 53 8 1176 224 256 0 11 chr6 77477404 77477491 -72039546 + CT-rich Low_complexity Low_complexity 3 88 0 8 1176 201 164 0 52 chr6 77477519 77477577 -72039460 + T-rich Low_complexity Low_complexity 5 59 0 8 1176 207 272 9 0 chr6 77478648 77478765 -72038272 + GA-rich Low_complexity Low_complexity 1 118 0 8 1176 216 270 63 0 chr6 77480120 77480183 -72036854 - MIR SINE MIR -105 157 91 8 1176 464 304 130 0 chr6 77481790 77481928 -72035109 - RSINE1 SINE B4 -4 161 6 8 1176 1694 243 7 176 chr6 77482161 77482896 -72034141 + RMER19C LTR ERVK 1 611 0 8 1176 395 303 154 26 chr6 77483068 77483224 -72033813 - MER58A DNA MER1_type -4 220 45 8 1176 3992 174 30 14 chr6 77483256 77483581 -72033456 + RMER6A LTR ERVK 1 327 -429 8 1176 579 29 0 0 chr6 77483581 77483650 -72033387 + (GA)n Simple_repeat Simple_repeat 2 70 0 8 1176 3992 174 30 14 chr6 77483650 77484060 -72032977 + RMER6A LTR ERVK 328 747 -9 8 1176 333 247 120 30 chr6 77484818 77484985 -72032052 + MamRep1161 DNA TcMar 60 241 -716 8 1176 285 75 0 0 chr6 77485453 77485493 -72031544 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1176 528 16 0 0 chr6 77485494 77485555 -72031482 + (GA)n Simple_repeat Simple_repeat 1 61 0 8 1176 439 271 0 0 chr6 77485565 77485650 -72031387 - RSINE1 SINE B4 -74 91 7 8 1176 288 0 0 0 chr6 77486011 77486043 -72030994 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1176 270 317 48 9 chr6 77486288 77486393 -72030644 + B1F1 SINE Alu 32 140 -9 8 1176 183 217 0 0 chr6 77486395 77486455 -72030582 + (CCA)n Simple_repeat Simple_repeat 1 60 0 8 1176 252 343 89 18 chr6 77486457 77486626 -72030411 - MIRb SINE MIR -29 239 59 8 1176 25 0 0 0 chr6 77486794 77486819 -72030218 + AT_rich Low_complexity Low_complexity 1 25 0 8 1176 413 320 97 45 chr6 77487935 77488089 -72028948 - RSINE1 SINE B4 -1 164 3 8 1176 377 283 20 10 chr6 77488221 77488321 -72028716 - PB1D10 SINE Alu -2 115 15 8 1176 372 77 58 0 chr6 77488567 77488619 -72028418 + HAL1-3A_ME LINE L1 1958 2012 -846 8 1176 486 125 0 0 chr6 77488620 77488700 -72028337 + (TA)n Simple_repeat Simple_repeat 2 81 0 8 1176 368 207 92 0 chr6 77489791 77489878 -72027159 + MTEb LTR MaLR 285 379 0 8 1176 1655 316 65 68 chr6 77490153 77490890 -72026147 + MER21B LTR ERV1 41 775 -88 8 1176 219 246 53 80 chr6 77491760 77491835 -72025202 + L2a LINE L2 3031 3103 -323 8 1176 221 360 110 0 chr6 77491964 77492064 -72024973 + L2a LINE L2 3301 3411 -15 8 1176 992 285 79 64 chr6 77492215 77492608 -72024429 - MTD LTR MaLR -20 399 1 8 1176 2522 164 25 2 chr6 77493118 77493474 -72023563 - L1_Mm LINE L1 -269 5614 5258 8 1176 1392 101 73 0 chr6 77493474 77493692 -72023345 - L1_Mus3 LINE L1 0 6638 6405 8 1176 2522 164 25 2 chr6 77493692 77493810 -72023227 - L1_Mm LINE L1 -626 5257 5130 8 1176 330 87 0 0 chr6 77493824 77493870 -72023167 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 1176 4935 128 11 80 chr6 77493870 77494030 -72023007 + Lx LINE L1 5625 5772 -882 8 1176 258 56 0 0 chr6 77494030 77494066 -72022971 + B1_Mur4 SINE Alu 113 148 -2 8 1176 4935 128 11 80 chr6 77494066 77494986 -72022051 + Lx LINE L1 5773 6626 -28 8 1176 621 156 8 0 chr6 77495013 77495135 -72021902 + Lx5 LINE L1 5947 6069 -981 8 1176 198 0 0 0 chr6 77495520 77495542 -72021495 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1176 183 301 175 0 chr6 77496868 77496971 -72020066 + MIRc SINE MIR 40 160 -108 8 1176 302 294 9 89 chr6 77497229 77497341 -72019696 - PB1D7 SINE Alu -1 119 17 8 1176 558 0 0 0 chr6 77497442 77497504 -72019533 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 8 1176 518 341 41 0 chr6 77497505 77497675 -72019362 - B3A SINE B2 -17 181 5 8 1176 607 335 72 89 chr6 77498681 77499028 -72018009 - MTEa LTR MaLR -20 359 19 8 1176 428 283 61 86 chr6 77499033 77499203 -72017834 + B3A SINE B2 1 166 -29 8 1176 399 21 0 0 chr6 77499203 77499251 -72017786 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1176 307 283 61 86 chr6 77499251 77499277 -72017760 + B2_Mm2 SINE B2 167 192 -3 8 1176 305 0 0 0 chr6 77499963 77500000 -72017037 + L1Md_F3 LINE L1 6397 6433 -151 8 1176 949 43 0 28 chr6 77500000 77500143 -72016894 + L1Md_F3 LINE L1 6434 6572 -12 1 1176 2238 131 12 34 chr6 77500272 77500682 -72016355 + Lx2 LINE L1 6596 6996 -1 2 1176 1789 234 37 32 chr6 77500708 77501171 -72015866 - Lx5 LINE L1 0 7050 6586 3 1176 21 0 0 0 chr6 77502195 77502216 -72014821 + AT_rich Low_complexity Low_complexity 1 21 0 4 1176 221 196 18 0 chr6 77502444 77502500 -72014537 + CT-rich Low_complexity Low_complexity 4 60 0 5 1176 262 211 18 0 chr6 77502722 77502779 -72014258 + MTEb LTR MaLR 312 369 -10 6 1176 261 164 18 0 chr6 77503629 77503684 -72013353 - L1MB5 LINE L1 -9 6165 6110 7 1176 342 333 67 0 chr6 77503685 77503850 -72013187 + B3A SINE B2 5 180 -18 8 1176 342 67 0 0 chr6 77503853 77503898 -72013139 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 1176 483 118 0 0 chr6 77503974 77504050 -72012987 + (TA)n Simple_repeat Simple_repeat 2 77 0 1 1176 378 0 0 0 chr6 77504253 77504295 -72012742 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1176 483 18 0 0 chr6 77504529 77504585 -72012452 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1176 931 238 20 0 chr6 77504585 77504787 -72012250 + B3 SINE B2 4 209 -7 1 1176 25 0 0 0 chr6 77504806 77504831 -72012206 + AT_rich Low_complexity Low_complexity 1 25 0 1 1176 318 278 201 35 chr6 77505808 77506002 -72011035 + B4A SINE B4 20 245 -47 1 1176 369 0 0 0 chr6 77506024 77506065 -72010972 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1176 202 209 23 0 chr6 77506894 77506937 -72010100 + CT-rich Low_complexity Low_complexity 1 44 0 1 1176 402 74 0 0 chr6 77507188 77507242 -72009795 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1176 726 12 0 0 chr6 77507242 77507325 -72009712 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 1 1176 213 121 0 0 chr6 77507327 77507360 -72009677 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1176 421 260 29 9 chr6 77507958 77508063 -72008974 + MLT1A0 LTR MaLR 1 107 -258 2 1176 231 306 83 0 chr6 77508105 77508177 -72008860 + MLT1A0 LTR MaLR 185 262 -103 2 1176 401 331 0 55 chr6 77510641 77510769 -72006268 - ID_B1 SINE B4 -1 223 103 2 1176 245 320 39 26 chr6 77510703 77510780 -72006257 - PB1D7 SINE Alu -30 90 13 2 1176 376 339 103 0 chr6 77511091 77511256 -72005781 - B3A SINE B2 -15 183 2 2 1176 6227 29 0 0 chr6 77512986 77513711 -72003326 - L1Md_T LINE L1 -1 6581 5857 2 1176 190 367 81 10 chr6 77518205 77518304 -71998733 + MIRc SINE MIR 37 142 -126 2 1176 298 317 65 65 chr6 77518980 77519226 -71997811 + ORR1C2 LTR MaLR 55 300 -84 2 1176 732 242 61 31 chr6 77520234 77520430 -71996607 + B3 SINE B2 1 202 -14 2 1176 286 380 22 22 chr6 77520899 77521214 -71995823 + Lx8 LINE L1 7014 7328 -145 2 1176 932 25 34 0 chr6 77523391 77523510 -71993527 - B1_Mus1 SINE Alu -1 147 25 3 1176 301 311 53 8 chr6 77523538 77523671 -71993366 + B1F SINE Alu 9 147 -2 3 1176 609 287 11 42 chr6 77524285 77524550 -71992487 - Lx8 LINE L1 0 7473 7217 3 1176 282 226 0 0 chr6 77524561 77524623 -71992414 + Lx9 LINE L1 6786 6847 -797 3 1176 318 352 8 0 chr6 77524686 77524814 -71992223 + B1F SINE Alu 2 130 -19 3 1176 234 0 0 0 chr6 77527418 77527444 -71989593 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1176 1058 56 27 47 chr6 77528227 77528377 -71988660 + B1_Mm SINE Alu 1 147 0 3 1176 498 33 0 0 chr6 77528377 77528437 -71988600 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 3 1176 372 322 84 53 chr6 77528465 77528731 -71988306 + B4 SINE B4 10 276 -16 3 1176 582 291 8 94 chr6 77531384 77531619 -71985418 + B3 SINE B2 2 216 0 3 1176 373 312 0 49 chr6 77532394 77532579 -71984458 + CT-rich Low_complexity Low_complexity 1 176 0 4 1176 441 0 0 0 chr6 77532883 77532932 -71984105 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1176 495 0 0 0 chr6 77532932 77532986 -71984051 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1176 659 275 7 0 chr6 77533011 77533153 -71983884 - B3A SINE B2 -55 143 1 4 1176 297 392 65 13 chr6 77533739 77533894 -71983143 + RSINE1 SINE B4 3 165 0 4 1176 23 68 0 0 chr6 77533903 77533947 -71983090 + AT_rich Low_complexity Low_complexity 1 44 0 4 1176 457 338 42 0 chr6 77533948 77534090 -71982947 + B1F SINE Alu 1 148 -1 4 1176 726 311 5 15 chr6 77535340 77535539 -71981498 - B4 SINE B4 -87 205 9 4 1176 690 72 0 0 chr6 77535981 77536078 -71980959 + (TTCC)n Simple_repeat Simple_repeat 4 100 0 4 1176 215 245 0 0 chr6 77536079 77536132 -71980905 + T-rich Low_complexity Low_complexity 1 53 0 4 1176 927 96 7 0 chr6 77536133 77536268 -71980769 - B1_Mus1 SINE Alu -1 147 12 5 1176 297 0 0 0 chr6 77536381 77536414 -71980623 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1176 424 340 48 55 chr6 77536549 77536714 -71980323 - RSINE1 SINE B4 0 165 2 5 1176 634 261 144 0 chr6 77536714 77536907 -71980130 - B4 SINE B4 -65 227 7 5 1176 1237 288 25 15 chr6 77537125 77537598 -71979439 - L1MA6 LINE L1 -1 6299 5822 5 1176 248 266 43 21 chr6 77537907 77538042 -71978995 - L1MA6 LINE L1 -665 5491 5357 5 1176 291 338 50 38 chr6 77539932 77540092 -71976945 + RSINE1 SINE B4 3 164 -1 5 1176 293 347 57 32 chr6 77540705 77540985 -71976052 + HAL1 LINE L1 7 293 -2214 5 1176 582 277 87 19 chr6 77541078 77541343 -71975694 - L1MA5 LINE L1 -454 5846 5564 5 1176 449 215 80 25 chr6 77541352 77541451 -71975586 + PB1D7 SINE Alu 27 140 -9 5 1176 540 283 87 0 chr6 77541573 77541803 -71975234 + L1MA7 LINE L1 6021 6270 -21 5 1176 781 274 43 142 chr6 77542963 77543380 -71973657 + MTE2a LTR MaLR 4 379 0 6 1176 287 267 0 74 chr6 77543644 77543725 -71973312 + B4 SINE B4 18 92 -200 6 1176 423 0 0 0 chr6 77544499 77544546 -71972491 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1176 763 290 46 42 chr6 77544559 77544818 -71972219 + B4A SINE B4 27 286 -6 6 1176 270 125 20 59 chr6 77545509 77545611 -71971426 + A-rich Low_complexity Low_complexity 4 101 0 6 1176 192 152 0 0 chr6 77545804 77545837 -71971200 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6 1176 234 0 0 0 chr6 77546660 77546686 -71970351 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1176 715 258 66 26 chr6 77547253 77547524 -71969513 + Lx8 LINE L1 7192 7473 0 6 1176 25 0 0 0 chr6 77547791 77547816 -71969221 + AT_rich Low_complexity Low_complexity 1 25 0 6 1176 234 302 60 8 chr6 77548687 77548804 -71968233 + L1M5 LINE L1 5778 5900 -224 6 1176 733 304 78 22 chr6 77549426 77549769 -71967268 + ORR1E LTR MaLR 3 355 -15 7 1176 432 0 0 0 chr6 77550113 77550161 -71966876 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1176 530 322 28 11 chr6 77550234 77550410 -71966627 - B4A SINE B4 -113 179 1 7 1176 727 272 16 26 chr6 77550438 77550627 -71966410 + B3A SINE B2 1 187 -11 7 1176 293 323 101 16 chr6 77551648 77551777 -71965260 + L2b LINE L2 3233 3372 -3 7 1176 186 43 0 0 chr6 77553217 77553240 -71963797 + (CATG)n Simple_repeat Simple_repeat 3 25 0 7 1176 479 308 28 7 chr6 77553875 77554019 -71963018 - RSINE1 SINE B4 -16 149 3 7 1176 396 0 0 0 chr6 77554535 77554579 -71962458 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1176 191 245 18 70 chr6 77555529 77555586 -71961451 + L2a LINE L2 3288 3341 -85 7 1176 814 241 85 0 chr6 77555926 77556125 -71960912 + ORR1D2 LTR MaLR 155 370 0 7 1176 935 317 119 29 chr6 77556133 77556711 -71960326 + Lx8 LINE L1 6841 7470 -3 8 1176 180 0 0 0 chr6 77556875 77556895 -71960142 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1176 27 0 0 0 chr6 77557385 77557412 -71959625 + AT_rich Low_complexity Low_complexity 1 27 0 8 1176 519 303 53 11 chr6 77557889 77558079 -71958958 + B3A SINE B2 1 198 0 8 1176 198 0 0 0 chr6 77558445 77558467 -71958570 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 1176 564 271 79 49 chr6 77560052 77560420 -71956617 + Lx8 LINE L1 7094 7472 -1 8 1176 419 355 65 103 chr6 77561295 77561663 -71955374 + MLT1A1 LTR MaLR 54 407 -1 8 1176 209 311 0 0 chr6 77562011 77562072 -71954965 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1176 1939 240 10 17 chr6 77562161 77562577 -71954460 - MTC LTR MaLR -8 413 1 8 1176 309 297 112 73 chr6 77562577 77562705 -71954332 - B4 SINE B4 -137 155 21 8 1176 536 84 12 0 chr6 77563309 77563392 -71953645 + (TG)n Simple_repeat Simple_repeat 1 84 0 9 1176 239 50 0 48 chr6 77563394 77563436 -71953601 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 9 1176 735 304 9 23 chr6 77564105 77564324 -71952713 - ID_B1 SINE B4 -8 216 1 9 1176 1490 103 9 0 chr6 77564900 77565113 -71951924 + L1_Mus1 LINE L1 6350 6564 -3 9 1176 512 135 21 0 chr6 77565964 77566060 -71950977 + GA-rich Low_complexity Low_complexity 3 100 0 9 1176 432 0 0 0 chr6 77566481 77566529 -71950508 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 1176 36647 12 3 7 chr6 77566627 77572441 -71944596 + L1Md_A LINE L1 1 5586 -297 9 1176 8896 12 0 0 chr6 77572441 77573437 -71943600 + L1Md_A LINE L1 5587 6582 0 9 1176 217 259 19 0 chr6 77574618 77574672 -71942365 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 9 1176 213 206 13 27 chr6 77575483 77575558 -71941479 + (TTTA)n Simple_repeat Simple_repeat 2 75 0 9 1176 833 181 0 0 chr6 77575566 77575704 -71941333 - B1_Mus1 SINE Alu -6 142 5 9 1176 349 323 31 0 chr6 77575706 77575802 -71941235 - PB1D7 SINE Alu -16 104 6 1 1176 476 346 19 5 chr6 77576229 77576444 -71940593 - ID_B1 SINE B4 -6 218 1 1 1176 342 0 0 0 chr6 77576824 77576862 -71940175 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1176 725 177 0 58 chr6 77576870 77577026 -71940011 + B1_Mus2 SINE Alu 1 147 0 1 1176 203 113 15 46 chr6 77577029 77577094 -71939943 + A-rich Low_complexity Low_complexity 2 64 0 1 1176 595 308 5 61 chr6 77577400 77577597 -71939440 + B3A SINE B2 13 198 0 1 1176 331 411 21 14 chr6 77578248 77578391 -71938646 + B4 SINE B4 148 291 -1 1 1176 189 0 0 0 chr6 77578491 77578512 -71938525 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1176 200 132 0 26 chr6 77579144 77579183 -71937854 + T-rich Low_complexity Low_complexity 5 42 0 1 1176 1280 84 39 16 chr6 77579862 77580044 -71936993 - B2_Mm2 SINE B2 -9 186 1 1 1176 605 243 22 43 chr6 77580146 77580331 -71936706 + B3A SINE B2 2 182 -16 1 1176 327 85 0 0 chr6 77580457 77580504 -71936533 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1176 342 0 0 0 chr6 77583069 77583107 -71933930 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1176 532 319 32 0 chr6 77583117 77583274 -71933763 - B3A SINE B2 -36 162 1 1 1176 250 218 49 37 chr6 77584785 77584866 -71932171 + Charlie2b DNA MER1_type 986 1067 -1715 1 1176 358 19 56 0 chr6 77584998 77585052 -71931985 + (CAAAAA)n Simple_repeat Simple_repeat 3 59 0 1 1176 410 255 69 0 chr6 77585073 77585175 -71931862 + B3A SINE B2 32 140 -58 1 1176 609 14 0 0 chr6 77585200 77585270 -71931767 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1176 693 203 0 3 chr6 77585593 77585890 -71931147 + CT-rich Low_complexity Low_complexity 1 295 0 1 1176 387 0 0 0 chr6 77587742 77587785 -71929252 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1176 621 255 20 47 chr6 77587808 77587956 -71929081 - B3A SINE B2 -53 145 2 1 1176 336 24 0 0 chr6 77588625 77588666 -71928371 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1 1176 546 160 168 32 chr6 77588905 77589060 -71927977 - B2_Mm2 SINE B2 -18 177 2 1 1176 187 325 11 67 chr6 77589272 77589361 -71927676 - L4 LINE RTE -625 1404 1321 1 1176 213 374 56 12 chr6 77589469 77589629 -71927408 + L2 LINE L2 2396 2562 -857 1 1176 1861 196 2 48 chr6 77589659 77590076 -71926961 + RMER10B LTR ERVL 1 398 0 1 1176 708 12 0 0 chr6 77592383 77592464 -71924573 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1176 480 299 42 18 chr6 77592584 77592751 -71924286 + Lx8 LINE L1 6898 7068 -405 1 1176 310 255 90 20 chr6 77592766 77592866 -71924171 + Lx8 LINE L1 7119 7225 -248 1 1176 3658 113 8 45 chr6 77592991 77593586 -71923451 - Lx2 LINE L1 0 6997 6425 1 1176 360 304 50 11 chr6 77593784 77594002 -71923035 - L1MA4 LINE L1 -439 5861 5606 1 1176 654 68 0 0 chr6 77594067 77594155 -71922882 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 1 1176 333 0 0 0 chr6 77594158 77594195 -71922842 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1176 29 28 0 0 chr6 77594398 77594434 -71922603 + AT_rich Low_complexity Low_complexity 1 36 0 1 1177 25 0 0 0 chr6 77594918 77594943 -71922094 + AT_rich Low_complexity Low_complexity 1 25 0 1 1177 241 100 40 0 chr6 77595848 77595898 -71921139 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1 1177 934 285 120 21 chr6 77596807 77597183 -71919854 - MTD LTR MaLR -1 418 6 1 1177 243 191 0 0 chr6 77597796 77597859 -71919178 + (CAG)n Simple_repeat Simple_repeat 3 65 0 1 1177 509 204 12 12 chr6 77598004 77598173 -71918864 + (TA)n Simple_repeat Simple_repeat 1 169 0 1 1177 820 270 49 100 chr6 77598636 77598987 -71918050 + ORR1E LTR MaLR 3 335 -24 1 1177 243 88 0 0 chr6 77598987 77599021 -71918016 + (CAT)n Simple_repeat Simple_repeat 2 35 0 1 1177 820 270 49 100 chr6 77599021 77599039 -71917998 + ORR1E LTR MaLR 336 353 -6 1 1177 378 0 0 0 chr6 77599175 77599217 -71917820 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1177 252 0 0 0 chr6 77599217 77599245 -71917792 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1 1177 374 257 51 57 chr6 77599385 77599542 -71917495 - Lx8 LINE L1 -202 7271 7116 1 1177 846 94 0 30 chr6 77599573 77599692 -71917345 + B1_Mus1 SINE Alu 22 137 -11 1 1177 235 0 0 54 chr6 77599692 77599729 -71917308 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1177 846 94 0 30 chr6 77599729 77599740 -71917297 + B1_Mus1 SINE Alu 138 148 0 1 1177 339 228 63 0 chr6 77599927 77600006 -71917031 - Lx8 LINE L1 -205 7268 7185 1 1177 796 148 0 38 chr6 77600544 77600727 -71916310 + GA-rich Low_complexity Low_complexity 2 177 0 1 1177 308 328 109 36 chr6 77600919 77601330 -71915707 + Lx9 LINE L1 7128 7568 -76 1 1177 215 41 60 20 chr6 77601705 77601755 -71915282 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 1 1177 954 278 47 23 chr6 77603529 77603861 -71913176 - MTD LTR MaLR 0 419 80 1 1177 1146 222 0 4 chr6 77603861 77604087 -71912950 - URR1B DNA MER1_type 0 225 1 1 1177 537 16 0 0 chr6 77604285 77604347 -71912690 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1177 333 0 0 0 chr6 77605791 77605828 -71911209 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1177 256 398 0 0 chr6 77606419 77606502 -71910535 + ID4 SINE ID 1 83 0 1 1177 426 349 69 8 chr6 77606519 77606649 -71910388 + RSINE1 SINE B4 10 147 -18 1 1177 252 283 7 0 chr6 77607083 77607224 -71909813 + GA-rich Low_complexity Low_complexity 1 142 0 1 1177 786 266 117 67 chr6 77608361 77608703 -71908334 + ORR1E LTR MaLR 1 359 0 1 1177 235 279 45 37 chr6 77608842 77608976 -71908061 + Lx8 LINE L1 7270 7404 -69 1 1177 294 313 17 34 chr6 77609982 77610101 -71906936 - ID_B1 SINE B4 0 224 108 1 1177 230 270 79 26 chr6 77611370 77611446 -71905591 - MIR SINE MIR -160 102 23 1 1177 1019 89 0 6 chr6 77611572 77611730 -71905307 + (GAGAA)n Simple_repeat Simple_repeat 4 160 0 1 1177 242 304 14 0 chr6 77611732 77611801 -71905236 + GA-rich Low_complexity Low_complexity 5 74 0 1 1177 2841 220 67 47 chr6 77612028 77612824 -71904213 + RLTR40 LTR ERVK 1 812 -5 1 1177 301 295 210 97 chr6 77613430 77613529 -71903508 + B4A SINE B4 1 121 -171 1 1177 425 19 19 0 chr6 77613529 77613583 -71903454 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1177 301 295 210 97 chr6 77613583 77613731 -71903306 + B4A SINE B4 122 276 -16 1 1177 301 92 62 0 chr6 77613731 77613796 -71903241 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 1 1177 357 24 0 0 chr6 77613796 77613838 -71903199 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1177 699 81 0 0 chr6 77613838 77613937 -71903100 + (GA)n Simple_repeat Simple_repeat 1 99 0 1 1177 327 118 40 0 chr6 77614930 77615006 -71902031 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 1177 236 137 20 0 chr6 77615032 77615083 -71901954 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1177 748 319 30 4 chr6 77615128 77615392 -71901645 - B4A SINE B4 -19 273 3 1 1177 361 231 11 0 chr6 77615483 77615574 -71901463 - Lx7 LINE L1 0 7696 7605 1 1177 901 98 83 0 chr6 77615602 77615734 -71901303 + B1_Mus2 SINE Alu 5 147 0 1 1177 228 35 0 0 chr6 77615759 77615788 -71901249 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1177 5743 68 1 3 chr6 77615820 77616595 -71900442 - L1Md_F2 LINE L1 -34 5849 5075 1 1177 5231 72 13 3 chr6 77616595 77617290 -71899747 + L1Md_F2 LINE L1 5880 6581 -1 1 1177 22 0 0 0 chr6 77617294 77617316 -71899721 + AT_rich Low_complexity Low_complexity 1 22 0 1 1177 417 20 0 0 chr6 77619021 77619071 -71897966 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1177 1377 85 10 0 chr6 77619337 77619537 -71897500 + L1Md_F2 LINE L1 6367 6568 -14 1 1177 436 289 15 45 chr6 77619550 77619684 -71897353 + RSINE1 SINE B4 2 131 -34 1 1177 408 40 0 0 chr6 77619999 77620049 -71896988 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1177 504 158 0 0 chr6 77620040 77620135 -71896902 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 1177 400 35 35 0 chr6 77621301 77621359 -71895678 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1177 255 237 17 0 chr6 77621666 77621725 -71895312 + T-rich Low_complexity Low_complexity 1 60 0 1 1177 604 325 101 44 chr6 77622516 77622922 -71894115 + MLT1C LTR MaLR 39 467 0 1 1177 255 93 0 0 chr6 77622995 77623038 -71893999 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 1 1177 417 20 0 0 chr6 77623441 77623491 -71893546 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1177 369 0 0 0 chr6 77623491 77623531 -71893506 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1177 206 242 15 0 chr6 77624514 77624580 -71892457 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1177 350 129 16 0 chr6 77624694 77624756 -71892281 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1177 228 143 0 0 chr6 77624790 77624832 -71892205 + (TATG)n Simple_repeat Simple_repeat 3 44 0 1 1177 202 185 0 36 chr6 77625059 77625115 -71891922 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1177 289 145 32 0 chr6 77625630 77625692 -71891345 + GA-rich Low_complexity Low_complexity 1 64 0 1 1177 872 307 24 100 chr6 77625932 77626312 -71890725 + MTE2a LTR MaLR 4 354 -25 1 1177 216 345 81 0 chr6 77626335 77626422 -71890615 - B4 SINE B4 -191 101 8 1 1177 540 0 0 0 chr6 77627028 77627088 -71889949 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1177 378 0 0 0 chr6 77628067 77628109 -71888928 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1177 375 145 0 0 chr6 77628286 77628349 -71888688 - B2_Mm2 SINE B2 -129 87 25 1 1177 6724 93 30 0 chr6 77628351 77629320 -71887717 + Lx3_Mus LINE L1 6003 7000 -9 1 1177 830 279 105 37 chr6 77629944 77630402 -71886635 - L1MA5A LINE L1 -391 5906 5418 1 1177 458 232 43 43 chr6 77630856 77630973 -71886064 + B3A SINE B2 4 120 -78 1 1177 1749 167 12 61 chr6 77631652 77631997 -71885040 - ORR1A4 LTR MaLR 0 329 2 2 1177 605 38 12 0 chr6 77632172 77632252 -71884785 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 1177 402 385 32 13 chr6 77632268 77632426 -71884611 - B4 SINE B4 -37 255 95 2 1177 302 283 61 70 chr6 77633215 77633329 -71883708 - B3 SINE B2 0 216 104 2 1177 195 342 116 33 chr6 77633580 77633701 -71883336 + L2a LINE L2 3275 3405 -21 2 1177 238 349 172 0 chr6 77633742 77633928 -71883109 - MIR SINE MIR -3 259 47 2 1177 2974 267 56 12 chr6 77633929 77633999 -71883038 - RCHARR1 DNA MER1_type -3 971 894 2 1177 297 0 0 0 chr6 77633999 77634032 -71883005 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1177 2974 267 56 12 chr6 77634032 77634885 -71882152 - RCHARR1 DNA MER1_type -81 893 7 2 1177 440 210 43 102 chr6 77635159 77635345 -71881692 - RLTR11A2 LTR ERVK -22 431 257 2 1177 591 280 36 42 chr6 77635406 77635666 -71881371 - RLTR11A2 LTR ERVK -162 283 28 2 1177 766 96 0 22 chr6 77637155 77637293 -71879744 - L1_Mus4 LINE L1 0 6636 6502 2 1177 441 0 0 0 chr6 77637563 77637612 -71879425 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1177 1969 296 72 32 chr6 77637977 77638825 -71878212 + Lx8 LINE L1 6588 7469 -4 2 1177 356 248 59 57 chr6 77639685 77639868 -71877169 - B3 SINE B2 -10 185 6 2 1177 378 116 58 0 chr6 77640027 77640113 -71876924 + (CATA)n Simple_repeat Simple_repeat 4 94 0 2 1177 934 254 51 83 chr6 77640788 77640913 -71876124 + MTD LTR MaLR 1 120 -299 2 1177 2294 73 3 0 chr6 77640913 77641216 -71875821 - L1_Mus2 LINE L1 0 6566 6263 2 1177 934 254 51 83 chr6 77641216 77641403 -71875634 + MTD LTR MaLR 121 303 -116 2 1177 484 245 99 5 chr6 77641473 77641625 -71875412 + MTD LTR MaLR 226 419 0 2 1177 24 67 0 0 chr6 77641895 77641940 -71875097 + AT_rich Low_complexity Low_complexity 1 45 0 2 1177 22 0 0 0 chr6 77641989 77642011 -71875026 + AT_rich Low_complexity Low_complexity 1 22 0 2 1177 343 321 89 0 chr6 77642059 77642171 -71874866 - B3A SINE B2 -75 123 2 2 1177 435 274 271 11 chr6 77643988 77644176 -71872861 + RMER15 LTR ERVL 339 575 0 2 1177 305 256 211 0 chr6 77645202 77645292 -71871745 - B3A SINE B2 -87 111 3 2 1177 336 49 59 35 chr6 77645695 77645780 -71871257 + (TTTG)n Simple_repeat Simple_repeat 2 88 0 2 1177 596 138 89 37 chr6 77645782 77645917 -71871120 - B1_Mus1 SINE Alu 0 148 7 2 1177 465 336 148 38 chr6 77646393 77646656 -71870381 + B4A SINE B4 1 292 0 2 1177 405 0 0 0 chr6 77646820 77646865 -71870172 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1177 22 35 0 0 chr6 77647897 77647926 -71869111 + AT_rich Low_complexity Low_complexity 1 29 0 2 1177 476 318 33 33 chr6 77648166 77648348 -71868689 + B3A SINE B2 1 182 -16 2 1177 399 113 0 0 chr6 77648353 77648415 -71868622 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1177 4558 2 0 0 chr6 77650445 77650938 -71866099 + MT2_Mm LTR ERVL 1 493 0 2 1177 45860 14 0 0 chr6 77650938 77656298 -71860739 + MERVL-int LTR ERVL 1 5360 -125 2 1177 381 179 46 35 chr6 77656298 77656385 -71860652 + ORR1A3-int LTR MaLR 553 640 -1323 2 1177 302 0 0 0 chr6 77656385 77656423 -71860614 + MERVL-int LTR ERVL 5448 5485 0 2 1177 4558 2 0 0 chr6 77656423 77656916 -71860121 + MT2_Mm LTR ERVL 1 493 0 2 1177 788 171 4 13 chr6 77656956 77657194 -71859843 + GA-rich Low_complexity Low_complexity 1 236 0 2 1177 1439 101 0 0 chr6 77657229 77657438 -71859599 + L1_Mus2 LINE L1 6358 6566 0 2 1177 4708 93 24 1 chr6 77657584 77658250 -71858787 - L1_Mus4 LINE L1 0 6636 5956 2 1177 846 244 4 62 chr6 77659531 77659775 -71857262 + Lx9 LINE L1 6907 7136 -508 2 1177 627 301 62 8 chr6 77659775 77660016 -71857021 + MTEa LTR MaLR 122 375 -4 2 1177 1784 173 22 76 chr6 77660690 77661011 -71856026 + ORR1C2 LTR MaLR 1 302 -82 2 1177 2861 41 6 0 chr6 77661011 77661355 -71855682 + ORR1A0 LTR MaLR 1 346 0 2 1177 1784 173 22 76 chr6 77661355 77661439 -71855598 + ORR1C2 LTR MaLR 303 384 0 2 1177 207 100 0 0 chr6 77662936 77662966 -71854071 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 1177 240 277 0 0 chr6 77662990 77663037 -71854000 - ID4_ SINE ID -26 57 11 2 1177 206 0 0 65 chr6 77663244 77663275 -71853762 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1177 267 313 49 119 chr6 77663374 77663559 -71853478 + B4A SINE B4 1 172 -120 2 1177 1470 53 27 0 chr6 77664474 77664661 -71852376 - B2_Mm1t SINE B2 -1 192 1 2 1177 446 33 17 0 chr6 77664776 77664836 -71852201 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1177 4765 117 25 22 chr6 77665279 77666318 -71850719 + L1Md_F2 LINE L1 406 1453 -4430 2 1177 7954 73 3 2 chr6 77666318 77667422 -71849615 + L1Md_F2 LINE L1 4481 5585 -298 2 1177 7318 72 14 2 chr6 77667423 77668388 -71848649 + L1Md_F2 LINE L1 5587 6563 -19 2 1177 286 302 118 28 chr6 77668449 77668813 -71848224 + Zaphod DNA Tip100 482 878 -3153 2 1177 239 378 53 7 chr6 77668974 77669126 -71847911 + LTR40a LTR ERVL 361 519 0 2 1177 25 31 0 0 chr6 77669233 77669265 -71847772 + AT_rich Low_complexity Low_complexity 1 32 0 2 1177 477 0 0 0 chr6 77670366 77670419 -71846618 + (TAA)n Simple_repeat Simple_repeat 2 54 0 2 1177 324 263 67 8 chr6 77670801 77670935 -71846102 - MER57A-int LTR ERV1 -242 5945 5804 2 1177 319 257 80 35 chr6 77671283 77671396 -71845641 + PB1D9 SINE Alu 2 119 -1 2 1177 873 286 56 65 chr6 77672013 77672368 -71844669 + ORR1E LTR MaLR 6 357 -2 2 1177 498 136 31 38 chr6 77673121 77673281 -71843756 + (TCTCTG)n Simple_repeat Simple_repeat 4 162 0 2 1177 229 377 19 0 chr6 77674734 77674840 -71842197 + AmnSINE1 SINE SINE 405 512 -63 2 1177 295 303 21 78 chr6 77675357 77675550 -71841487 - B3A SINE B2 -15 183 2 2 1177 213 65 0 0 chr6 77675677 77675708 -71841329 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1177 436 260 77 0 chr6 77675856 77675960 -71841077 + RSINE1 SINE B4 13 124 -41 2 1177 22 0 0 0 chr6 77675977 77675999 -71841038 + AT_rich Low_complexity Low_complexity 1 22 0 2 1177 338 214 0 11 chr6 77677601 77677691 -71839346 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 2 1177 3106 155 8 141 chr6 77677827 77678077 -71838960 + RMER19C LTR ERVK 1 210 -401 2 1177 2002 116 29 62 chr6 77678077 77678417 -71838620 + ORR1A4 LTR MaLR 1 329 0 2 1177 3106 155 8 141 chr6 77678417 77678870 -71838167 + RMER19C LTR ERVK 211 611 0 2 1177 315 49 0 0 chr6 77679534 77679575 -71837462 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1177 360 0 0 0 chr6 77679575 77679614 -71837423 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1177 258 289 32 32 chr6 77679688 77679781 -71837256 - B2_Mm2 SINE B2 -102 93 1 2 1177 1064 0 5 64 chr6 77681730 77681918 -71835119 + (TTC)n Simple_repeat Simple_repeat 1 177 0 2 1177 966 47 28 39 chr6 77681918 77682096 -71834941 + (TTCTCC)n Simple_repeat Simple_repeat 3 178 0 2 1177 449 333 5 77 chr6 77682210 77682405 -71834632 - B3A SINE B2 -16 182 2 2 1177 258 340 78 39 chr6 77682624 77682777 -71834260 + RSINE1 SINE B4 5 163 -2 2 1177 229 236 0 0 chr6 77683341 77683396 -71833641 + Lx4B LINE L1 6446 6500 -558 2 1177 1368 43 76 0 chr6 77683397 77683582 -71833455 + L1Md_F3 LINE L1 6384 6582 -2 2 1177 2845 203 34 2 chr6 77683634 77684192 -71832845 + Lx5 LINE L1 6474 7049 -1 2 1177 519 281 124 10 chr6 77684457 77684651 -71832386 + ID_B1 SINE B4 2 217 -7 2 1177 189 100 39 20 chr6 77689101 77689152 -71827885 + (CAAAC)n Simple_repeat Simple_repeat 4 55 0 2 1177 1685 33 33 0 chr6 77690123 77690334 -71826703 - L1Md_F2 LINE L1 -1 6581 6364 2 1177 344 313 0 0 chr6 77690773 77690856 -71826181 + B4 SINE B4 3 85 -207 2 1177 387 0 0 0 chr6 77690869 77690912 -71826125 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1177 495 0 0 0 chr6 77690912 77690966 -71826071 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 2 1177 426 39 0 0 chr6 77691036 77691088 -71825949 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1177 762 262 0 21 chr6 77691722 77691909 -71825128 + B3A SINE B2 1 183 -15 2 1177 284 304 11 11 chr6 77691960 77692053 -71824984 + B4A SINE B4 3 95 -197 2 1177 3201 94 11 2 chr6 77692109 77692566 -71824471 - L1_Mus3 LINE L1 -9 6629 6169 2 1177 292 359 0 0 chr6 77693442 77693520 -71823517 + ID4_ SINE ID 6 83 0 2 1177 489 120 10 29 chr6 77694100 77694203 -71822834 + T-rich Low_complexity Low_complexity 2 102 0 2 1177 213 94 0 0 chr6 77694346 77694378 -71822659 + (TTA)n Simple_repeat Simple_repeat 3 34 0 2 1177 276 273 11 0 chr6 77694552 77694640 -71822397 + L1MC3 LINE L1 7684 7772 -13 2 1177 360 270 30 30 chr6 77694947 77695107 -71821930 - L1MD LINE L1 -763 5383 5224 2 1177 239 338 13 51 chr6 77695207 77695285 -71821752 - RSINE1 SINE B4 -20 145 71 2 1177 216 0 0 0 chr6 77695426 77695450 -71821587 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1177 369 320 49 70 chr6 77696344 77696529 -71820508 + B4 SINE B4 112 292 0 2 1177 279 0 0 0 chr6 77696583 77696614 -71820423 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1177 236 146 0 0 chr6 77696633 77696681 -71820356 + Lx8 LINE L1 7426 7473 0 2 1177 499 346 89 34 chr6 77697065 77697334 -71819703 + MER2 DNA MER2_type 2 285 -60 2 1177 32 26 0 0 chr6 77697954 77697993 -71819044 + AT_rich Low_complexity Low_complexity 1 39 0 2 1177 631 195 23 30 chr6 77698079 77698211 -71818826 + RMER6C LTR ERVK 1 131 -559 2 1177 4029 179 96 38 chr6 77698219 77699651 -71817386 + RMER17B LTR ERVK 2 958 0 2 1177 492 48 0 0 chr6 77700203 77700266 -71816771 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1177 516 68 0 0 chr6 77700273 77700346 -71816691 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 1177 185 266 136 25 chr6 77701048 77701129 -71815908 - MIRm SINE MIR -5 271 182 2 1177 1677 175 22 66 chr6 77702236 77702598 -71814439 - ORR1B2 LTR MaLR -16 351 6 2 1177 192 152 0 0 chr6 77702678 77702711 -71814326 + CT-rich Low_complexity Low_complexity 1 33 0 2 1177 971 202 16 5 chr6 77702754 77702948 -71814089 + Lx4A LINE L1 6863 7058 0 3 1177 369 0 0 0 chr6 77702953 77702994 -71814043 + (TTA)n Simple_repeat Simple_repeat 1 41 0 3 1177 202 364 116 0 chr6 77703636 77703757 -71813280 - MER5B DNA MER1_type -28 150 16 3 1177 314 308 19 0 chr6 77704068 77704175 -71812862 + Lx8 LINE L1 7185 7293 -180 3 1177 354 138 0 0 chr6 77704210 77704268 -71812769 + (GAA)n Simple_repeat Simple_repeat 3 60 0 3 1177 563 92 0 11 chr6 77704357 77704445 -71812592 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 3 1177 261 75 0 0 chr6 77704446 77704486 -71812551 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1177 3944 33 19 6 chr6 77704538 77705022 -71812015 + L1Md_F2 LINE L1 6093 6582 0 3 1177 284 316 17 8 chr6 77705404 77705522 -71811515 + GA-rich Low_complexity Low_complexity 2 120 0 3 1177 439 401 21 29 chr6 77706692 77706972 -71810065 + B4A SINE B4 1 278 -14 3 1177 417 295 35 77 chr6 77707246 77707415 -71809622 - MTE2a LTR MaLR -203 176 15 3 1177 352 118 14 14 chr6 77707545 77707614 -71809423 + (TATG)n Simple_repeat Simple_repeat 2 70 0 3 1177 249 269 14 36 chr6 77707813 77707952 -71809085 + L1MB2 LINE L1 6033 6168 -3 3 1177 483 296 32 0 chr6 77708672 77708797 -71808240 - B3A SINE B2 -57 141 13 3 1177 761 280 132 49 chr6 77709952 77710300 -71806737 - MTE2a LTR MaLR 0 379 35 3 1177 828 319 180 28 chr6 77710684 77710714 -71806323 + Lx9 LINE L1 6521 6557 -1087 3 1177 378 0 0 0 chr6 77710714 77710756 -71806281 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1177 828 319 180 28 chr6 77710756 77711370 -71805667 + Lx9 LINE L1 6558 7263 -381 3 1177 212 184 0 0 chr6 77712272 77712310 -71804727 + T-rich Low_complexity Low_complexity 1 38 0 3 1177 292 299 0 0 chr6 77712812 77712899 -71804138 + B4 SINE B4 2 88 -204 3 1177 216 135 0 0 chr6 77713326 77713363 -71803674 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1177 1208 54 0 0 chr6 77713363 77713510 -71803527 - B1_Mm SINE Alu 0 147 1 3 1177 382 279 26 37 chr6 77714049 77714204 -71802833 + B3A SINE B2 35 175 -20 3 1177 478 297 69 0 chr6 77714230 77714375 -71802662 + B3A SINE B2 6 160 -38 3 1177 524 264 15 39 chr6 77715019 77715149 -71801888 - ID_B1 SINE B4 -8 216 90 3 1177 282 389 20 5 chr6 77715516 77715720 -71801317 + Lx8 LINE L1 6990 7196 -277 3 1177 561 298 48 19 chr6 77716618 77716827 -71800210 + B3 SINE B2 1 215 -1 3 1177 380 283 26 19 chr6 77717556 77717711 -71799326 + Lx8 LINE L1 6967 7122 -351 3 1177 328 278 16 23 chr6 77718807 77719000 -71798037 + (TATG)n Simple_repeat Simple_repeat 1 191 0 3 1177 362 285 39 10 chr6 77719035 77719155 -71797882 - B4A SINE B4 -72 220 92 3 1177 303 71 0 0 chr6 77719159 77719201 -71797836 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 3 1177 1952 255 91 8 chr6 77719434 77720039 -71796998 - Lx8 LINE L1 -350 7123 6469 3 1177 200 318 131 8 chr6 77720104 77720234 -71796803 + MIRb SINE MIR 74 219 -49 3 1177 193 318 15 15 chr6 77720317 77720384 -71796653 + MIRc SINE MIR 41 107 -161 3 1177 483 48 0 0 chr6 77720395 77720457 -71796580 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 3 1177 640 120 17 8 chr6 77720460 77720578 -71796459 + (TTTCC)n Simple_repeat Simple_repeat 3 121 0 3 1177 261 0 0 0 chr6 77721477 77721506 -71795531 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1177 259 266 73 59 chr6 77721764 77721900 -71795137 - RMER15 LTR ERVL -88 487 350 3 1177 4124 128 29 34 chr6 77722419 77723156 -71793881 - Lx LINE L1 -20 6634 5902 3 147 31875 68 1 1 chr6 77723739 77728427 -71788610 + L1Md_F2 LINE L1 807 5589 -297 3 1178 7931 56 2 1 chr6 77728428 77729422 -71787615 + L1Md_F2 LINE L1 5591 6585 0 3 1178 431 301 57 0 chr6 77730129 77730252 -71786785 + B3A SINE B2 1 130 -68 3 1178 3705 133 15 10 chr6 77730299 77730898 -71786139 + Lx LINE L1 6050 6651 -3 3 1178 349 309 42 73 chr6 77731518 77731552 -71785485 - B2_Mm2 SINE B2 -9 186 155 3 1178 284 44 44 0 chr6 77731552 77731597 -71785440 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 3 1178 531 288 87 8 chr6 77731597 77731754 -71785283 - B3A SINE B2 -41 154 1 3 1178 425 359 79 42 chr6 77731864 77732105 -71784932 + B4A SINE B4 43 292 0 3 1178 216 280 79 57 chr6 77732593 77732733 -71784304 + MIRb SINE MIR 81 223 -45 3 1178 1592 258 43 8 chr6 77733705 77734096 -71782941 - MTD LTR MaLR -14 405 1 3 1178 450 0 0 0 chr6 77734270 77734320 -71782717 + (TAA)n Simple_repeat Simple_repeat 1 50 0 3 1178 470 256 30 8 chr6 77734726 77734860 -71782177 - MTEb LTR MaLR 0 379 243 3 1178 792 338 43 49 chr6 77735305 77735396 -71781641 + ORR1E LTR MaLR 3 86 -273 3 1178 653 202 219 0 chr6 77735396 77735579 -71781458 - URR1B DNA MER1_type -2 223 1 3 1178 792 338 43 49 chr6 77735579 77735835 -71781202 + ORR1E LTR MaLR 87 348 -11 3 1178 282 380 19 25 chr6 77736832 77736994 -71780043 + RSINE1 SINE B4 5 165 0 3 1178 4631 43 5 10 chr6 77738185 77738765 -71778272 + L1Md_F2 LINE L1 6005 6581 -1 3 1178 288 0 0 0 chr6 77738779 77738811 -71778226 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1178 189 0 0 0 chr6 77738862 77738883 -71778154 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1178 472 284 149 54 chr6 77738887 77739311 -71777726 - L1MA5 LINE L1 -26 6274 5811 3 1178 395 252 7 59 chr6 77739426 77739561 -71777476 - L1MA5 LINE L1 -487 5813 5686 3 1178 431 266 100 39 chr6 77739581 77739761 -71777276 + MTD LTR MaLR 19 209 -210 3 1178 185 308 37 37 chr6 77739912 77739993 -71777044 + L2c LINE L2 3062 3142 -245 3 1178 724 336 73 4 chr6 77741128 77741388 -71775649 + B4 SINE B4 13 290 -2 3 1178 543 103 0 0 chr6 77741402 77741499 -71775538 + (CA)n Simple_repeat Simple_repeat 1 97 0 3 1178 6067 84 32 29 chr6 77741895 77742969 -71774068 - Lx3_Mus LINE L1 -470 6539 5466 3 1178 2732 136 0 0 chr6 77742969 77743396 -71773641 + Lx3_Mus LINE L1 6583 7009 0 3 1178 339 25 0 0 chr6 77743500 77743540 -71773497 + (CATA)n Simple_repeat Simple_repeat 3 42 0 3 1178 403 369 91 29 chr6 77743658 77743901 -71773136 + B4A SINE B4 33 290 -2 3 1178 1055 91 0 20 chr6 77744009 77744155 -71772882 - B1_Mus1 SINE Alu -1 147 5 3 1178 200 97 0 31 chr6 77744163 77744195 -71772842 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 3 1178 626 48 0 12 chr6 77744197 77744282 -71772755 - B2_Mm2 SINE B2 -74 121 38 3 1178 452 113 0 0 chr6 77744280 77744342 -71772695 + B2_Mm2 SINE B2 9 70 -125 3 1178 2294 224 9 55 chr6 77744362 77744916 -71772121 + MT2A LTR ERVL 5 531 -2 3 1178 234 203 32 16 chr6 77746223 77746348 -71770689 + (TA)n Simple_repeat Simple_repeat 1 127 0 3 1178 482 340 20 14 chr6 77746583 77746729 -71770308 - RSINE1 SINE B4 0 165 19 3 1178 306 0 0 0 chr6 77747491 77747525 -71769512 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1178 351 0 0 0 chr6 77747525 77747563 -71769474 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1178 435 363 109 5 chr6 77747735 77747990 -71769047 - MER97c DNA MER1_type? -423 667 396 3 1178 1333 276 42 0 chr6 77747990 77748345 -71768692 - ORR1D2 LTR MaLR 0 370 1 3 1178 435 363 109 5 chr6 77748345 77748474 -71768563 - MER97c DNA MER1_type? -695 395 243 3 1178 239 317 75 19 chr6 77749413 77749519 -71767518 + MIR3 SINE MIR 87 198 -10 3 1178 329 372 63 0 chr6 77750372 77750563 -71766474 - RMER5 LTR ERV1 -4 530 328 3 1178 336 304 72 22 chr6 77750644 77750782 -71766255 - RMER5 LTR ERV1 -357 177 33 3 1178 232 200 12 12 chr6 77750803 77750884 -71766153 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1178 435 198 137 10 chr6 77752290 77752392 -71764645 - MTD LTR MaLR -14 405 291 3 1178 2176 34 0 0 chr6 77752394 77752663 -71764374 - L1Md_F2 LINE L1 -45 6537 6269 3 1178 364 296 90 77 chr6 77752674 77752943 -71764094 - MTD LTR MaLR -143 236 6 3 1178 483 18 0 0 chr6 77753385 77753441 -71763596 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1178 231 247 63 21 chr6 77753576 77753671 -71763366 - L1MEg LINE L1 -4577 1507 1409 3 1178 342 91 0 0 chr6 77753944 77753999 -71763038 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1178 303 28 0 0 chr6 77753999 77754035 -71763002 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1178 235 234 0 45 chr6 77754091 77754158 -71762879 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 3 1178 519 95 0 0 chr6 77754164 77754238 -71762799 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 1178 225 259 56 56 chr6 77754279 77754369 -71762668 + BC1_Mm scRNA scRNA 2 91 -61 3 1178 245 330 0 85 chr6 77754446 77754552 -71762485 - MLT2B5 LTR ERVL -297 304 208 3 1178 3515 252 23 10 chr6 77754938 77755808 -71761229 + Lx5 LINE L1 6153 7033 -17 3 1178 22 0 0 0 chr6 77755916 77755938 -71761099 + AT_rich Low_complexity Low_complexity 1 22 0 3 1178 34 0 0 0 chr6 77756742 77756776 -71760261 + AT_rich Low_complexity Low_complexity 1 34 0 3 1178 7276 83 19 16 chr6 77756883 77758532 -71758505 - L1_Mus3 LINE L1 0 6638 4999 3 1178 376 254 43 143 chr6 77760075 77760355 -71756682 + L1_Mur3 LINE L1 4035 4286 -1594 3 1178 23 0 0 0 chr6 77760596 77760619 -71756418 + AT_rich Low_complexity Low_complexity 1 23 0 3 1178 253 279 0 151 chr6 77760815 77760908 -71756129 + B1_Mur2 SINE Alu 70 148 -1 3 1178 305 47 0 23 chr6 77763895 77763939 -71753098 + (TTA)n Simple_repeat Simple_repeat 1 43 0 3 1178 329 360 88 0 chr6 77764157 77764282 -71752755 + MTEb LTR MaLR 18 153 -226 3 1178 661 254 6 45 chr6 77764296 77764473 -71752564 + MTEb LTR MaLR 208 377 -2 3 1178 348 127 0 0 chr6 77764762 77764817 -71752220 + (TCCC)n Simple_repeat Simple_repeat 2 56 0 3 1178 531 159 0 0 chr6 77764822 77764935 -71752102 + (TG)n Simple_repeat Simple_repeat 2 114 0 3 1178 929 187 145 13 chr6 77764989 77765248 -71751789 + MTC LTR MaLR 1 408 -13 3 1178 326 302 23 0 chr6 77765259 77765345 -71751692 - B3A SINE B2 -109 89 2 3 1178 444 19 0 0 chr6 77766815 77766868 -71750169 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1178 268 278 0 53 chr6 77767363 77767458 -71749579 - MTEb LTR MaLR -11 368 279 4 1178 315 104 0 0 chr6 77768301 77768349 -71748688 + (TCC)n Simple_repeat Simple_repeat 1 48 0 4 1178 24 77 0 0 chr6 77769300 77769352 -71747685 + AT_rich Low_complexity Low_complexity 1 52 0 4 1178 26 30 0 0 chr6 77769560 77769593 -71747444 + AT_rich Low_complexity Low_complexity 1 33 0 4 1178 248 263 10 50 chr6 77769810 77769910 -71747127 - L1MA4 LINE L1 -370 5930 5835 4 1178 3491 15 5 0 chr6 77770007 77770401 -71746636 - MTA_Mm LTR MaLR 0 396 1 4 1178 309 100 0 0 chr6 77770417 77770467 -71746570 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1178 399 41 0 0 chr6 77770467 77770515 -71746522 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1178 22 35 0 0 chr6 77770549 77770578 -71746459 + AT_rich Low_complexity Low_complexity 1 29 0 4 1178 328 323 103 16 chr6 77770592 77770718 -71746319 - RSINE1 SINE B4 -2 163 27 4 1178 6734 60 0 1 chr6 77771186 77772077 -71744960 + L1Md_F2 LINE L1 4697 5586 -297 4 1178 8296 38 0 1 chr6 77772078 77773059 -71743978 + L1Md_F2 LINE L1 5588 6567 -15 4 1178 524 15 15 0 chr6 77773068 77773133 -71743904 + (GGAAA)n Simple_repeat Simple_repeat 3 68 0 4 1178 252 213 26 39 chr6 77773304 77773382 -71743655 + (TATG)n Simple_repeat Simple_repeat 2 78 0 4 1178 317 300 111 0 chr6 77773390 77773480 -71743557 - B3A SINE B2 -92 106 7 4 1178 409 342 25 19 chr6 77773988 77774146 -71742891 + RSINE1 SINE B4 3 161 -4 4 1178 248 329 94 51 chr6 77774600 77774834 -71742203 - RLTR26 LTR ERVK -205 437 194 4 1178 21 0 0 0 chr6 77775761 77775782 -71741255 + AT_rich Low_complexity Low_complexity 1 21 0 4 1178 270 254 14 0 chr6 77775799 77775870 -71741167 + RMER17A-int LTR ERVK 1011 1082 -646 4 1178 411 21 0 0 chr6 77776070 77776118 -71740919 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1178 220 241 103 0 chr6 77776999 77777057 -71739980 - MIRb SINE MIR -23 245 182 4 1178 333 0 0 0 chr6 77777157 77777194 -71739843 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 4 1178 746 219 58 0 chr6 77777430 77777654 -71739383 - Lx9 LINE L1 -22 7622 7386 4 1178 24 32 0 0 chr6 77777981 77778012 -71739025 + AT_rich Low_complexity Low_complexity 1 31 0 4 1178 338 269 177 13 chr6 77778880 77779038 -71737999 - L1M2 LINE L1 -1705 4438 4255 4 1178 297 278 89 50 chr6 77779050 77779330 -71737707 + L1M2 LINE L1 4461 4751 -1392 4 1178 321 257 27 13 chr6 77779559 77779634 -71737403 + RSINE1 SINE B4 53 128 -37 4 1178 354 23 0 0 chr6 77779637 77779680 -71737357 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1178 435 222 0 0 chr6 77779721 77779802 -71737235 + B1_Mus2 SINE Alu 65 145 -2 4 1178 795 111 0 0 chr6 77779964 77780090 -71736947 + L1_Mus1 LINE L1 6442 6567 0 4 1178 23 54 0 0 chr6 77780090 77780127 -71736910 + AT_rich Low_complexity Low_complexity 1 37 0 4 1178 25 31 0 0 chr6 77780153 77780185 -71736852 + AT_rich Low_complexity Low_complexity 1 32 0 4 1178 1207 245 155 0 chr6 77780901 77781236 -71735801 - MTD LTR MaLR -2 417 31 4 1178 452 283 25 85 chr6 77782434 77782635 -71734402 + B3A SINE B2 1 189 -9 4 1178 396 59 0 0 chr6 77782717 77782768 -71734269 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1178 707 282 19 14 chr6 77782863 77783072 -71733965 + B3 SINE B2 2 211 -5 4 1178 28 0 0 0 chr6 77783075 77783103 -71733934 + AT_rich Low_complexity Low_complexity 1 28 0 4 1178 259 248 107 33 chr6 77783555 77783676 -71733361 - MER53 DNA hAT -60 133 4 4 1178 487 351 51 55 chr6 77783714 77784006 -71733031 + B4A SINE B4 1 291 -1 4 1178 463 299 57 38 chr6 77784250 77784459 -71732578 - B3 SINE B2 -3 213 1 4 1178 228 361 16 47 chr6 77784716 77784844 -71732193 - L2c LINE L2 0 3387 3264 4 1178 633 270 13 43 chr6 77785679 77785890 -71731147 + B3 SINE B2 16 216 0 4 1178 2072 104 103 6 chr6 77786181 77786530 -71730507 - L1_Mus4 LINE L1 0 6636 6254 4 1178 261 0 0 0 chr6 77786817 77786846 -71730191 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1178 275 0 29 0 chr6 77787683 77787718 -71729319 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1178 733 125 26 7 chr6 77787751 77787904 -71729133 + (CA)n Simple_repeat Simple_repeat 1 156 0 4 1178 264 233 0 0 chr6 77787904 77787977 -71729060 + GA-rich Low_complexity Low_complexity 4 76 0 4 1178 22 0 0 0 chr6 77788153 77788175 -71728862 + AT_rich Low_complexity Low_complexity 1 22 0 4 1178 353 22 22 0 chr6 77788336 77788382 -71728655 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1178 456 19 0 0 chr6 77788483 77788536 -71728501 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1178 369 0 0 0 chr6 77788536 77788576 -71728461 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1178 22 35 0 0 chr6 77788623 77788652 -71728385 + AT_rich Low_complexity Low_complexity 1 29 0 4 1178 387 0 0 0 chr6 77789158 77789201 -71727836 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1178 2759 72 10 3 chr6 77790900 77791292 -71725745 - L1_Mm LINE L1 -850 5033 4639 4 1178 892 81 0 29 chr6 77791292 77791432 -71725605 + L1Md_F2 LINE L1 6443 6578 -4 4 1178 222 162 29 29 chr6 77792149 77792219 -71724818 + (TAA)n Simple_repeat Simple_repeat 1 70 0 4 1178 527 273 58 0 chr6 77792229 77792350 -71724687 + RSINE1 SINE B4 3 130 -35 4 1178 719 311 30 35 chr6 77792509 77792913 -71724124 + MLT1D-int LTR MaLR 119 603 -768 4 1178 270 0 0 0 chr6 77793275 77793305 -71723732 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1178 367 286 61 0 chr6 77793305 77793396 -71723641 - PB1D9 SINE Alu -15 105 9 4 1178 341 350 91 54 chr6 77794012 77794365 -71722672 + MLT-int LTR MaLR 1343 1708 -27 4 1178 1147 295 117 31 chr6 77794406 77794851 -71722186 + MLT1D LTR MaLR 21 503 -2 4 1178 195 100 0 0 chr6 77795414 77795444 -71721593 + (CAA)n Simple_repeat Simple_repeat 1 30 0 4 1178 899 299 110 65 chr6 77795970 77796371 -71720666 - MTD LTR MaLR 0 419 1 4 1178 574 303 41 36 chr6 77798301 77798496 -71718541 + B3A SINE B2 2 197 -19 4 1178 1018 50 14 0 chr6 77798526 77798667 -71718370 + (TAGA)n Simple_repeat Simple_repeat 3 145 0 4 1178 2374 31 0 0 chr6 77800008 77800299 -71716738 + L1Md_F2 LINE L1 5296 5586 -297 4 1178 7114 50 86 0 chr6 77800299 77801215 -71715822 + L1Md_F2 LINE L1 5587 6581 -1 4 1178 342 278 125 40 chr6 77801422 77801598 -71715439 + RMER30 DNA MER1_type 11 201 -1 4 1178 1037 307 116 9 chr6 77801727 77802056 -71714981 - MTD LTR MaLR -14 405 42 4 1178 351 171 0 0 chr6 77802118 77802194 -71714843 + (ATG)n Simple_repeat Simple_repeat 3 78 0 4 1178 278 297 168 0 chr6 77802194 77802295 -71714742 - RSINE1 SINE B4 0 165 48 4 1178 339 193 0 0 chr6 77803610 77803693 -71713344 + GA-rich Low_complexity Low_complexity 2 84 0 4 1178 22 56 0 0 chr6 77804867 77804903 -71712134 + AT_rich Low_complexity Low_complexity 1 36 0 4 1178 792 140 5 43 chr6 77805136 77805322 -71711715 + GA-rich Low_complexity Low_complexity 2 180 0 4 1178 777 275 24 0 chr6 77805470 77805677 -71711360 - B3 SINE B2 -1 215 4 4 1178 263 289 124 62 chr6 77806220 77806397 -71710640 - MER5A DNA MER1_type 0 189 2 4 1178 5608 204 38 53 chr6 77807772 77809114 -71707923 + RMER12 LTR ERVK 1 1322 0 4 1178 1178 322 33 11 chr6 77810202 77810569 -71706468 + MTEa LTR MaLR 3 377 -2 4 1178 386 337 69 5 chr6 77812141 77812344 -71704693 - B3 SINE B2 0 216 1 4 1178 351 0 0 0 chr6 77812739 77812778 -71704259 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1178 216 0 0 0 chr6 77812786 77812810 -71704227 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1178 389 231 33 0 chr6 77813058 77813149 -71703888 + U6 snRNA snRNA 14 107 0 4 1178 362 194 39 46 chr6 77813149 77813279 -71703758 + L1ME4a LINE L1 5909 6037 -87 4 1178 22 35 0 0 chr6 77813354 77813383 -71703654 + AT_rich Low_complexity Low_complexity 1 29 0 4 1178 199 344 142 21 chr6 77813394 77813732 -71703305 + L2 LINE L2 2037 2415 -1004 4 1178 414 257 52 26 chr6 77815311 77815427 -71701610 + B3 SINE B2 1 119 -97 4 1178 290 335 120 18 chr6 77816097 77816264 -71700773 + MER58A DNA MER1_type 22 205 -19 4 1178 445 369 33 66 chr6 77816575 77816816 -71700221 - MER74A LTR ERVL -318 240 8 4 1178 260 227 25 51 chr6 77816972 77817051 -71699986 + RMER15 LTR ERVL 405 481 -94 4 1178 261 0 0 0 chr6 77817085 77817114 -71699923 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1178 670 120 16 0 chr6 77817114 77817239 -71699798 + (GA)n Simple_repeat Simple_repeat 2 128 0 4 1178 1033 39 3 60 chr6 77817250 77817634 -71699403 + (GGGAGA)n Simple_repeat Simple_repeat 1 361 0 4 1178 1082 61 0 43 chr6 77817652 77817840 -71699197 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 4 1178 229 324 0 0 chr6 77818767 77818835 -71698202 + ID4 SINE ID 5 72 -11 4 1178 774 0 0 0 chr6 77820008 77820094 -71696943 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 4 1178 533 312 6 0 chr6 77820595 77820755 -71696282 + RSINE1 SINE B4 3 163 -2 4 1178 360 64 0 0 chr6 77820759 77820806 -71696231 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 1178 373 317 117 0 chr6 77821840 77821985 -71695052 + B4 SINE B4 43 204 -88 4 1178 695 188 12 0 chr6 77821880 77822008 -71695029 + B1_Mus1 SINE Alu 9 140 -9 4 1178 354 23 0 0 chr6 77822032 77822075 -71694962 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1178 313 299 21 15 chr6 77822176 77822291 -71694746 - PB1D10 SINE Alu -5 115 2 4 1178 190 106 0 41 chr6 77822808 77822857 -71694180 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 4 1178 458 175 175 0 chr6 77823484 77823587 -71693450 + B3 SINE B2 93 213 -3 4 1178 266 260 79 44 chr6 77823611 77823840 -71693197 - L1MC3 LINE L1 -191 7594 7358 4 1178 745 272 42 0 chr6 77823841 77824032 -71693005 + B3 SINE B2 1 199 -17 4 1178 662 94 17 17 chr6 77824033 77824152 -71692885 + (TAGA)n Simple_repeat Simple_repeat 4 122 0 5 1178 365 243 9 27 chr6 77824200 77824310 -71692727 + Lx4A LINE L1 6327 6434 -624 5 1178 888 211 125 22 chr6 77824332 77824604 -71692433 + Lx4A LINE L1 6759 7058 0 5 1178 365 289 124 24 chr6 77824613 77824781 -71692256 + B3A SINE B2 27 210 -6 5 1178 1102 95 0 0 chr6 77824975 77825122 -71691915 - B1_Mus2 SINE Alu 0 147 1 5 1178 434 282 126 13 chr6 77825421 77825651 -71691386 - L1MC3 LINE L1 -985 6800 6545 4 1178 6966 68 0 5 chr6 77825676 77826614 -71690423 + L1_Mus1 LINE L1 5635 6567 0 5 1178 22 0 0 0 chr6 77826614 77826636 -71690401 + AT_rich Low_complexity Low_complexity 1 22 0 5 1178 7492 92 43 50 chr6 77828696 77829886 -71687151 - Lx3_Mus LINE L1 0 7009 5829 5 1178 603 232 167 5 chr6 77830150 77830336 -71686701 - B3 SINE B2 0 216 1 5 1178 252 284 0 15 chr6 77831542 77831610 -71685427 + GA-rich Low_complexity Low_complexity 1 67 0 5 1178 3801 93 2 4 chr6 77832413 77832933 -71684104 - L1_Mus4 LINE L1 -5 6631 6113 5 1178 1494 104 0 0 chr6 77832946 77833167 -71683870 + L1_Mus4 LINE L1 5898 6118 -518 5 1178 270 0 0 0 chr6 77833225 77833255 -71683782 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1178 216 0 0 0 chr6 77833406 77833430 -71683607 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1178 225 354 61 9 chr6 77833511 77833625 -71683412 + Arthur1 DNA Tip100 468 587 -3360 5 1178 1054 293 117 51 chr6 77833749 77834512 -71682525 + Arthur1 DNA Tip100 2861 3673 -274 5 1178 387 372 34 58 chr6 77834534 77834738 -71682299 + B4A SINE B4 3 206 -86 5 1178 5391 94 6 5 chr6 77834951 77835734 -71681303 - L1_Mus1 LINE L1 -2 6565 5782 5 1178 2327 75 21 21 chr6 77835944 77836284 -71680753 - L1_Mus2 LINE L1 -30 6536 6197 5 1178 208 352 56 8 chr6 77836905 77837031 -71680006 + MIR SINE MIR 97 228 -34 5 1178 261 241 0 53 chr6 77837061 77837118 -71679919 + B4 SINE B4 55 108 -184 5 1178 347 302 24 8 chr6 77837442 77837569 -71679468 - Lx8 LINE L1 -349 7124 6996 5 1178 684 64 0 0 chr6 77837650 77837744 -71679293 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 1178 263 0 0 0 chr6 77838183 77838213 -71678824 - U6 snRNA snRNA -77 30 1 5 1178 330 298 205 15 chr6 77838223 77838625 -71678412 - L1ME2 LINE L1 -268 5896 5419 5 1178 496 314 38 30 chr6 77838888 77839259 -71677778 - L1MA4 LINE L1 -441 5859 5487 5 1178 357 341 52 87 chr6 77839814 77840100 -71676937 + MLT1A0 LTR MaLR 74 349 -16 5 1178 565 304 96 67 chr6 77840354 77840594 -71676443 - MTE2a LTR MaLR -132 247 1 5 1178 518 290 124 34 chr6 77841159 77841684 -71675353 + L1MC1 LINE L1 4671 5242 -904 5 1178 255 300 68 2 chr6 77841793 77841947 -71675090 + L1MC1 LINE L1 5420 5587 -746 5 1178 499 260 62 56 chr6 77842399 77842721 -71674316 + L1MC1 LINE L1 5587 5910 -423 5 1178 331 359 43 19 chr6 77843520 77843730 -71673307 - Tigger5 DNA MER2_type -2166 240 26 5 1178 551 331 0 70 chr6 77843739 77843924 -71673113 + B3A SINE B2 9 180 -18 5 1178 318 26 0 0 chr6 77843925 77843964 -71673073 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1178 1046 77 0 0 chr6 77844180 77844310 -71672727 + B1_Mus1 SINE Alu 4 133 -15 5 1178 229 26 0 50 chr6 77844315 77844355 -71672682 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1178 537 331 11 52 chr6 77844360 77844551 -71672486 + B3 SINE B2 27 209 -7 5 1178 332 284 113 36 chr6 77845211 77845379 -71671658 + MIR SINE MIR 33 213 -49 5 1178 253 172 0 79 chr6 77845410 77845473 -71671564 + RLTR25A LTR ERVK 519 576 -527 5 1178 374 216 20 20 chr6 77845417 77845516 -71671521 + B1_Mus2 SINE Alu 48 146 -1 5 1178 204 243 0 0 chr6 77845825 77845899 -71671138 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1178 363 283 21 14 chr6 77845922 77846062 -71670975 + (TATG)n Simple_repeat Simple_repeat 4 144 0 5 1178 413 165 0 21 chr6 77846086 77846179 -71670858 + (TATG)n Simple_repeat Simple_repeat 4 94 0 5 1178 623 269 19 0 chr6 77846380 77846536 -71670501 + RSINE1 SINE B4 3 161 -4 5 1178 260 27 27 0 chr6 77846540 77846577 -71670460 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1178 1193 159 10 10 chr6 77846703 77846906 -71670131 + ORR1B2 LTR MaLR 1 203 -164 5 1178 215 170 0 21 chr6 77846987 77847035 -71670002 + A-rich Low_complexity Low_complexity 2 48 0 5 1178 957 96 73 0 chr6 77847060 77847196 -71669841 + B1_Mm SINE Alu 1 146 -1 5 1178 570 15 0 0 chr6 77847197 77847264 -71669773 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1178 1112 193 10 10 chr6 77847313 77847522 -71669515 + ORR1B2 LTR MaLR 139 347 -20 5 1178 239 0 0 31 chr6 77848577 77848609 -71668428 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1178 1038 89 0 0 chr6 77848612 77848747 -71668290 - B1_Mus2 SINE Alu -12 135 1 5 1178 315 0 0 0 chr6 77848786 77848821 -71668216 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1178 300 346 170 0 chr6 77848929 77849088 -71667949 - B4A SINE B4 -102 190 5 5 1178 767 239 32 50 chr6 77849600 77849820 -71667217 + B3 SINE B2 1 216 0 5 1178 560 291 78 22 chr6 77850471 77850650 -71666387 - B3 SINE B2 -27 189 1 5 1178 507 346 49 11 chr6 77851193 77851365 -71665672 + B3A SINE B2 2 180 -18 5 1178 294 50 0 0 chr6 77851365 77851405 -71665632 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1178 507 346 49 11 chr6 77851405 77851416 -71665621 + B3A SINE B2 181 191 -7 5 1178 347 292 77 22 chr6 77852070 77852252 -71664785 - Lx8 LINE L1 -64 7409 7218 5 1178 4451 165 15 44 chr6 77852261 77853085 -71663952 + RLTR13D3 LTR ERVK 1 800 -314 5 1178 3655 90 2 2 chr6 77853085 77853575 -71663462 + L1_Mus2 LINE L1 6076 6565 -1 5 1178 2256 184 38 154 chr6 77853575 77853921 -71663116 + RLTR13C1 LTR ERVK 651 983 0 5 1178 261 0 0 0 chr6 77855114 77855143 -71661894 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1178 334 301 181 31 chr6 77855161 77855415 -71661622 - B4A SINE B4 0 292 1 5 147 3859 175 19 64 chr6 77856005 77857637 -71659400 + Lx2A LINE L1 5507 6976 -32 5 1179 229 114 167 28 chr6 77857634 77857706 -71659331 + Lx2A LINE L1 6927 7008 0 5 1179 759 258 66 0 chr6 77857835 77858033 -71659004 - B3 SINE B2 -5 211 1 5 1179 578 243 103 11 chr6 77858890 77859065 -71657972 + B3A SINE B2 3 193 -5 5 1179 284 326 150 30 chr6 77859744 77860110 -71656927 - MLT1D LTR MaLR -1 626 207 5 1179 278 286 0 0 chr6 77860186 77860249 -71656788 - MLT1D LTR MaLR -417 88 26 5 1179 623 196 67 115 chr6 77860431 77860639 -71656398 + B3A SINE B2 1 198 0 5 1179 222 91 0 0 chr6 77860665 77860698 -71656339 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1179 24 32 0 0 chr6 77861036 77861067 -71655970 + AT_rich Low_complexity Low_complexity 1 31 0 5 1179 224 349 30 0 chr6 77861600 77861666 -71655371 - ID4_ SINE ID -11 72 5 5 1179 645 214 402 15 chr6 77862650 77862750 -71654287 - MTEb LTR MaLR -3 376 242 5 1179 2187 173 13 0 chr6 77862750 77863137 -71653900 - ORR1B1 LTR MaLR 0 394 3 5 1179 645 300 94 21 chr6 77863137 77863355 -71653682 - MTEb LTR MaLR -138 241 4 5 1179 1803 191 77 35 chr6 77863940 77864342 -71652695 - MTD LTR MaLR 0 419 1 5 1179 343 302 190 6 chr6 77864383 77864546 -71652491 - B3A SINE B2 -5 193 1 5 1179 465 103 0 0 chr6 77864829 77864897 -71652140 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1179 192 77 0 0 chr6 77865270 77865296 -71651741 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1179 406 229 70 84 chr6 77865307 77865450 -71651587 - B3 SINE B2 -68 148 8 5 1179 401 319 83 28 chr6 77867111 77867256 -71649781 + B4A SINE B4 72 224 -68 5 1179 22 56 0 0 chr6 77867384 77867420 -71649617 + AT_rich Low_complexity Low_complexity 1 36 0 5 1179 282 116 0 0 chr6 77867827 77867870 -71649167 + (CGTG)n Simple_repeat Simple_repeat 4 46 0 5 1179 315 96 0 0 chr6 77868409 77868461 -71648576 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1179 503 305 33 13 chr6 77868468 77868621 -71648416 - B3A SINE B2 -42 156 1 5 1179 306 331 56 49 chr6 77868723 77868885 -71648152 - Charlie15a DNA MER1_type -5 219 57 5 1179 213 288 87 94 chr6 77869615 77869753 -71647284 + L3 LINE CR1 4341 4477 -12 5 1179 620 287 50 0 chr6 77870027 77870208 -71646829 + Lx8 LINE L1 7157 7346 -127 5 1179 234 179 0 18 chr6 77870225 77870282 -71646755 + Lx8 LINE L1 7416 7471 -2 5 1179 24 53 0 0 chr6 77870618 77870656 -71646381 + AT_rich Low_complexity Low_complexity 1 38 0 5 1179 7001 110 7 5 chr6 77870656 77872279 -71644758 - L1_Mus3 LINE L1 -6 6632 5007 5 1179 363 340 24 54 chr6 77872671 77872839 -71644198 - B3 SINE B2 -16 200 38 5 1179 603 92 0 0 chr6 77873931 77874018 -71643019 + (TC)n Simple_repeat Simple_repeat 2 88 0 5 1179 548 291 11 35 chr6 77874161 77874330 -71642707 + B3A SINE B2 48 216 0 5 1179 586 277 62 17 chr6 77874354 77874530 -71642507 + B3A SINE B2 15 198 0 5 1179 730 266 48 0 chr6 77875055 77875243 -71641794 + B3A SINE B2 2 198 0 5 1179 307 302 104 0 chr6 77876053 77876149 -71640888 - PB1D9 SINE Alu -2 118 13 5 1179 225 263 51 26 chr6 77876084 77876162 -71640875 - B4A SINE B4 -131 161 82 5 1179 461 293 89 15 chr6 77876591 77876726 -71640311 - RSINE1 SINE B4 -19 146 2 5 1179 431 242 8 8 chr6 77876825 77876954 -71640083 + L1MA4 LINE L1 4611 4739 -1141 5 1179 534 91 0 0 chr6 77876955 77877032 -71640005 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1179 213 216 0 0 chr6 77877127 77877164 -71639873 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1179 408 40 0 0 chr6 77877180 77877230 -71639807 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1179 320 311 19 28 chr6 77877234 77877340 -71639697 + L1M2 LINE L1 4790 4894 -1249 5 1179 375 23 0 0 chr6 77877448 77877492 -71639545 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1179 491 305 33 29 chr6 77877573 77877983 -71639054 + L1MA4 LINE L1 5049 5494 -803 5 1179 384 244 22 6 chr6 77878568 77878710 -71638327 + L1MA4 LINE L1 5685 5897 -403 5 1179 218 333 0 0 chr6 77878771 77878828 -71638209 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1179 854 158 6 25 chr6 77879005 77879167 -71637870 + L1Md_F2 LINE L1 6411 6569 -13 5 1179 272 289 103 28 chr6 77879194 77879301 -71637736 - B1_Mur1 SINE Alu -5 144 30 6 1179 601 301 96 19 chr6 77879938 77880260 -71636777 - Lx8 LINE L1 -7 7466 7120 6 1179 780 256 4 26 chr6 77880260 77880493 -71636544 + L1_Rod LINE L1 5497 5724 -123 6 1179 821 120 0 8 chr6 77881565 77881691 -71635346 - RLTR15 LTR ERVK 0 359 235 6 1179 2180 136 3 3 chr6 77881691 77882061 -71634976 - L1_Mur2 LINE L1 -1486 4391 4022 6 1179 4844 157 35 1 chr6 77882061 77882853 -71634184 + Lx4A LINE L1 6232 7050 -8 6 1179 958 211 31 26 chr6 77882871 77883100 -71633937 - RLTR15 LTR ERVK -129 230 1 6 1179 624 185 43 58 chr6 77883177 77883315 -71633722 - B1_Mur2 SINE Alu -1 148 13 6 1179 544 316 33 0 chr6 77883317 77883469 -71633568 - RSINE1 SINE B4 -6 159 3 6 1179 211 161 18 18 chr6 77883556 77883613 -71633424 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1179 559 314 80 0 chr6 77884250 77884425 -71632612 + B3 SINE B2 2 190 -26 6 1179 342 355 12 10 chr6 77884524 77884650 -71632387 + PB1D10 SINE Alu 2 128 -22 6 1179 423 320 55 73 chr6 77884650 77884977 -71632060 + L1MB7 LINE L1 4949 5269 -877 6 1179 362 236 28 9 chr6 77885241 77885348 -71631689 + PB1D10 SINE Alu 1 109 -8 6 1179 396 322 90 67 chr6 77885430 77886087 -71630950 + L1MB7 LINE L1 5441 6143 -41 6 1179 306 0 0 0 chr6 77886168 77886202 -71630835 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1179 375 23 0 0 chr6 77886383 77886427 -71630610 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1179 950 109 0 7 chr6 77886427 77886566 -71630471 - B1_Mus1 SINE Alu -10 138 1 6 1179 274 331 59 86 chr6 77886925 77887077 -71629960 - B4 SINE B4 -76 216 69 6 1179 319 57 0 79 chr6 77887077 77887153 -71629884 + (TTTTG)n Simple_repeat Simple_repeat 1 70 0 6 1179 243 0 0 0 chr6 77887549 77887576 -71629461 + (TC)n Simple_repeat Simple_repeat 1 27 0 6 1179 213 286 0 0 chr6 77887790 77887881 -71629156 + (TATG)n Simple_repeat Simple_repeat 2 92 0 6 1179 435 38 0 0 chr6 77888569 77888622 -71628415 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1179 762 250 198 26 chr6 77889111 77889454 -71627583 - MTD LTR MaLR -14 405 1 6 1179 770 296 50 91 chr6 77889874 77890235 -71626802 + ORR1E LTR MaLR 9 354 -5 6 1179 338 368 93 19 chr6 77890835 77891093 -71625944 + L3b LINE CR1 192 468 -14 6 1179 250 316 170 21 chr6 77893171 77893365 -71623672 + ID_B1 SINE B4 2 224 0 6 1179 1161 269 65 24 chr6 77893810 77894222 -71622815 - Lx8 LINE L1 -357 7116 6688 6 1179 504 357 39 25 chr6 77894946 77895150 -71621887 + LTR16A LTR ERVL 66 272 -179 6 1179 437 349 30 38 chr6 77896133 77896526 -71620511 - Lx8 LINE L1 -257 7216 6827 6 1179 430 92 0 38 chr6 77897279 77897358 -71619679 + (GGGGA)n Simple_repeat Simple_repeat 1 76 0 6 1179 21 0 0 0 chr6 77897876 77897897 -71619140 + AT_rich Low_complexity Low_complexity 1 21 0 6 1179 2818 207 38 2 chr6 77897909 77898436 -71618601 - Lx5 LINE L1 -10 7040 6495 6 1179 1997 225 55 8 chr6 77898436 77898911 -71618126 + Lx5 LINE L1 5987 6483 -567 6 1179 1016 193 61 9 chr6 77899466 77899680 -71617357 - URR1B DNA MER1_type 0 225 1 6 1179 284 346 62 6 chr6 77899841 77900018 -71617019 - MIR SINE MIR -28 234 48 6 1179 24 0 0 0 chr6 77900113 77900137 -71616900 + AT_rich Low_complexity Low_complexity 1 24 0 6 1179 369 310 90 5 chr6 77900137 77900463 -71616574 - L1MA5 LINE L1 -9 6291 5925 6 1179 183 412 0 0 chr6 77901645 77901730 -71615307 + L2 LINE L2 2678 2762 -657 6 1179 639 308 76 80 chr6 77903296 77903571 -71613466 + B4 SINE B4 7 280 -12 6 1179 198 0 0 0 chr6 77903574 77903596 -71613441 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 6 1179 418 17 17 17 chr6 77903594 77903654 -71613383 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1179 444 286 70 54 chr6 77904239 77904416 -71612621 + B3A SINE B2 1 181 -17 6 1179 428 72 14 0 chr6 77904416 77904485 -71612552 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1179 192 40 0 0 chr6 77905006 77905031 -71612006 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1179 24 0 0 0 chr6 77905189 77905213 -71611824 + AT_rich Low_complexity Low_complexity 1 24 0 6 1179 24 32 0 0 chr6 77905338 77905369 -71611668 + AT_rich Low_complexity Low_complexity 1 31 0 6 1179 370 282 35 0 chr6 77905516 77905601 -71611436 + RSINE1 SINE B4 56 143 -22 6 1179 453 19 0 0 chr6 77905608 77905662 -71611375 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1179 225 252 66 57 chr6 77909478 77909600 -71607437 + ORR1E LTR MaLR 68 190 -169 6 1179 550 153 0 18 chr6 77909602 77909715 -71607322 + CT-rich Low_complexity Low_complexity 2 112 0 6 1179 818 249 93 0 chr6 77909722 77909915 -71607122 - ID_B1 SINE B4 -9 215 5 6 1179 439 166 22 54 chr6 77910505 77910690 -71606347 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 6 1179 636 314 37 31 chr6 77910956 77910986 -71606051 - B3A SINE B2 -6 192 163 6 1179 744 92 0 0 chr6 77910986 77911105 -71605932 + (TC)n Simple_repeat Simple_repeat 2 120 0 6 1179 423 0 0 0 chr6 77911105 77911151 -71605886 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1179 636 314 37 31 chr6 77911151 77911310 -71605727 - B3A SINE B2 -36 162 2 6 1179 877 102 14 7 chr6 77911888 77912021 -71605016 + (GAAA)n Simple_repeat Simple_repeat 4 138 0 6 1179 333 0 0 0 chr6 77912021 77912058 -71604979 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 6 1179 877 102 14 7 chr6 77912058 77912072 -71604965 + (GAAA)n Simple_repeat Simple_repeat 3 16 0 6 1179 599 282 30 22 chr6 77913394 77913662 -71603375 + Lx7 LINE L1 5756 6025 -1671 6 1179 35 41 0 0 chr6 77913684 77913733 -71603304 + AT_rich Low_complexity Low_complexity 1 49 0 6 1179 504 332 133 10 chr6 77913982 77914570 -71602467 - L1MB7 LINE L1 -144 6040 5381 6 1179 620 276 41 27 chr6 77914688 77915031 -71602006 - L1MB7 LINE L1 -908 5238 4881 6 1179 518 306 86 33 chr6 77915152 77915581 -71601456 - L1MB7 LINE L1 -1244 4902 4451 6 1179 1541 241 57 14 chr6 77916274 77916644 -71600393 - MTC LTR MaLR -2 419 34 6 1179 23 33 0 0 chr6 77916849 77916879 -71600158 + AT_rich Low_complexity Low_complexity 1 30 0 6 1179 710 309 16 6 chr6 77916879 77917061 -71599976 + B3A SINE B2 2 185 -13 6 1179 204 40 0 0 chr6 77917351 77917376 -71599661 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1179 239 303 14 57 chr6 77917852 77917922 -71599115 - ID4 SINE ID -11 72 6 6 1179 353 268 41 55 chr6 77919096 77919242 -71597795 - B3A SINE B2 -6 192 49 6 1179 237 231 0 0 chr6 77919322 77919374 -71597663 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1179 276 30 0 0 chr6 77920326 77920359 -71596678 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1179 273 111 0 0 chr6 77921138 77921177 -71595860 - L1_Mm LINE L1 -1850 4033 3995 6 1179 4621 79 0 42 chr6 77921177 77921274 -71595763 + L1Md_F2 LINE L1 5937 6033 -549 6 1179 3269 21 39 0 chr6 77921274 77921655 -71595382 - MTA_Mm LTR MaLR 0 396 1 6 1179 4621 79 0 42 chr6 77921655 77922231 -71594806 + L1Md_F2 LINE L1 6034 6582 0 6 1179 240 248 142 35 chr6 77922616 77922729 -71594308 - L1M5 LINE L1 -559 5603 5479 6 1179 349 257 53 44 chr6 77922785 77922899 -71594138 - B3A SINE B2 0 198 84 6 1179 308 64 21 0 chr6 77922919 77922966 -71594071 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 6 1179 657 86 0 0 chr6 77922966 77923059 -71593978 - B1_Mus2 SINE Alu -13 134 42 6 1179 346 159 0 0 chr6 77923060 77923129 -71593908 + (CCCCAG)n Simple_repeat Simple_repeat 6 74 0 6 1179 289 154 0 55 chr6 77923129 77923184 -71593853 - B1_Mur4 SINE Alu -94 56 5 6 1179 655 349 31 27 chr6 77923281 77923537 -71593500 + B4A SINE B4 14 270 -22 6 1179 687 12 0 0 chr6 77923539 77923619 -71593418 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1179 288 253 120 0 chr6 77923707 77923782 -71593255 + RSINE1 SINE B4 57 140 -25 6 1179 337 286 13 0 chr6 77924019 77924096 -71592941 + RSINE1 SINE B4 88 165 0 6 1179 234 0 0 0 chr6 77924159 77924185 -71592852 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1179 204 125 0 0 chr6 77925045 77925077 -71591960 + (TAA)n Simple_repeat Simple_repeat 2 33 0 6 1179 253 237 26 0 chr6 77926865 77926941 -71590096 - ID2 SINE ID -2 81 4 6 1179 289 258 9 19 chr6 77929179 77929393 -71587644 + GA-rich Low_complexity Low_complexity 1 211 0 6 1179 26 50 0 0 chr6 77929762 77929802 -71587235 + GC_rich Low_complexity Low_complexity 1 40 0 6 1179 404 310 68 37 chr6 77931304 77931328 -71585709 - B4 SINE B4 -37 255 216 6 1179 589 188 117 66 chr6 77931328 77931341 -71585696 - B1_Mus1 SINE Alu 0 148 137 6 1179 477 0 0 0 chr6 77931341 77931394 -71585643 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 6 1179 404 310 68 37 chr6 77931394 77931517 -71585520 - B4 SINE B4 -77 215 91 6 1179 275 323 49 15 chr6 77932616 77932820 -71584217 - L1MC1 LINE L1 -161 6172 5962 6 1179 523 326 10 48 chr6 77932826 77933032 -71584005 - B3A SINE B2 0 198 1 6 1179 300 53 0 0 chr6 77933144 77933182 -71583855 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1179 286 200 57 51 chr6 77933229 77933387 -71583650 + (ATATG)n Simple_repeat Simple_repeat 2 160 0 6 1179 228 280 37 18 chr6 77933469 77933578 -71583459 - L1MC1 LINE L1 -524 5809 5699 6 1179 465 300 23 0 chr6 77934278 77934408 -71582629 + B4A SINE B4 157 289 -3 6 1179 256 375 89 39 chr6 77936055 77936273 -71580764 + MLT1L LTR MaLR 148 378 -232 6 1179 249 372 78 70 chr6 77936273 77936660 -71580377 - LTR33A_ LTR ERVL 0 531 142 6 1179 1491 237 103 16 chr6 77936733 77937111 -71579926 + MTD LTR MaLR 2 412 -7 6 1179 355 294 171 29 chr6 77937617 77937757 -71579280 - B3A SINE B2 0 198 39 6 1179 27 49 0 0 chr6 77937839 77937880 -71579157 + AT_rich Low_complexity Low_complexity 1 41 0 6 1179 273 235 37 0 chr6 77938299 77938380 -71578657 - ERVL-E-int LTR ERVL -1222 4445 4362 6 1179 733 176 239 0 chr6 77940183 77940342 -71576695 + URR1A DNA MER1_type 1 197 -29 6 1179 180 0 0 0 chr6 77940342 77940362 -71576675 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1179 898 236 32 35 chr6 77940363 77940514 -71576523 + L1_Mur3 LINE L1 1014 1171 -6557 7 1179 252 86 0 0 chr6 77940514 77940549 -71576488 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1179 962 127 0 0 chr6 77940553 77940687 -71576350 - B1_Mus2 SINE Alu -13 134 1 7 1179 1050 198 11 8 chr6 77940687 77940983 -71576054 + L1_Mur3 LINE L1 1172 1466 -4414 7 1179 1939 101 38 3 chr6 77940983 77941272 -71575765 + RLTR9E LTR ERVK 1 299 -110 7 1179 547 168 7 30 chr6 77941276 77941411 -71575626 + L1_Mur3 LINE L1 1479 1610 -4270 7 1179 941 171 22 16 chr6 77941478 77941662 -71575375 - RLTR9E LTR ERVK 0 409 225 7 1179 354 146 49 0 chr6 77941664 77941746 -71575291 + L1_Mur3 LINE L1 1635 1720 -4160 7 1179 13626 82 3 1 chr6 77941747 77943343 -71573694 + L1Md_F2 LINE L1 374 1968 -3915 7 1179 410 0 20 0 chr6 77943343 77943393 -71573644 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1179 13949 85 4 2 chr6 77943393 77944793 -71572244 + L1Md_F2 LINE L1 1969 3374 -2509 7 1179 7522 74 2 1 chr6 77944781 77945824 -71571213 + L1Md_F2 LINE L1 4543 5586 -297 7 1179 7581 71 7 3 chr6 77945824 77946804 -71570233 + L1Md_F2 LINE L1 5587 6570 -12 7 1179 3178 177 161 160 chr6 77946826 77947777 -71569260 + L1_Mur3 LINE L1 1697 2727 -3153 7 1179 952 65 0 8 chr6 77947777 77947902 -71569135 - B1_Mus1 SINE Alu 0 148 25 7 1179 3178 177 161 160 chr6 77947902 77948372 -71568665 + L1_Mur3 LINE L1 2728 3238 -2642 7 1179 1961 196 15 13 chr6 77948372 77948764 -71568273 - ORR1B1 LTR MaLR 0 394 2 7 1179 3178 177 161 160 chr6 77948764 77948883 -71568154 + L1_Mur3 LINE L1 3239 3364 -2516 7 1179 978 197 97 34 chr6 77948865 77949217 -71567820 + L1_Mur3 LINE L1 1278 1651 -4229 7 1179 1892 193 23 36 chr6 77949215 77949693 -71567344 - L1_Mur3 LINE L1 -6717 995 524 7 1179 371 219 138 42 chr6 77949694 77949861 -71567176 + Lx7 LINE L1 7512 7694 -2 7 1179 596 362 70 18 chr6 77949940 77950213 -71566824 + B4A SINE B4 4 290 -2 7 1179 2586 82 8 11 chr6 77950736 77951104 -71565933 - L1Md_F2 LINE L1 -2 6580 6214 7 1179 4657 37 19 0 chr6 77951104 77951693 -71565344 + L1Md_F2 LINE L1 5611 6210 -372 7 1179 431 328 17 0 chr6 77951740 77951859 -71565178 + RSINE1 SINE B4 12 132 -33 7 1179 417 234 43 0 chr6 77951916 77952010 -71565027 - MTEb LTR MaLR -92 287 190 7 1179 258 298 194 24 chr6 77952022 77952146 -71564891 - MTEb LTR MaLR -225 154 10 7 1179 331 307 84 24 chr6 77952166 77952416 -71564621 - L1M4 LINE L1 -405 5779 5515 7 1179 1172 55 7 0 chr6 77952418 77952563 -71564474 + B1_Mm SINE Alu 2 147 0 7 1179 233 49 73 0 chr6 77952563 77952604 -71564433 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 7 1179 240 342 41 15 chr6 77952608 77952875 -71564162 - L1M4 LINE L1 -646 5528 5255 7 1179 264 250 131 7 chr6 77952934 77953071 -71563966 - L1M4 LINE L1 -980 5166 5013 7 1179 222 156 0 0 chr6 77953071 77953116 -71563921 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1179 641 371 53 8 chr6 77953205 77953471 -71563566 - B4A SINE B4 -14 278 1 7 1179 692 296 189 45 chr6 77953503 77954125 -71562912 - L1M4 LINE L1 -1190 4956 4234 7 1179 1771 40 18 0 chr6 77954125 77954347 -71562690 - L1Md_A LINE L1 -1 6581 6356 7 1179 692 296 189 45 chr6 77954347 77954432 -71562605 - L1M4 LINE L1 -1913 4233 4147 7 1179 5826 109 50 2 chr6 77954522 77955433 -71561604 - Lx3_Mus LINE L1 -5 7004 6050 7 1179 23 68 0 0 chr6 77955486 77955530 -71561507 + AT_rich Low_complexity Low_complexity 1 44 0 7 1179 489 351 19 0 chr6 77955787 77955941 -71561096 + B3A SINE B2 1 157 -41 7 1179 1239 85 0 0 chr6 77955950 77956221 -71560816 + (CA)n Simple_repeat Simple_repeat 1 271 0 7 1179 2216 189 55 10 chr6 77957492 77957844 -71559193 - L1_Mur2 LINE L1 -3451 2426 2052 7 1179 402 21 0 0 chr6 77957844 77957891 -71559146 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1179 519 17 0 0 chr6 77957893 77957953 -71559084 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 1179 2216 189 55 10 chr6 77957953 77958120 -71558917 - L1_Mur2 LINE L1 -3826 2051 1881 7 1179 1390 212 126 19 chr6 77958120 77958805 -71558232 - L1_Mur2 LINE L1 -4373 1504 765 7 1179 687 262 15 7 chr6 77959289 77959469 -71557568 + B3A SINE B2 1 177 -39 7 1179 560 317 80 67 chr6 77959989 77960303 -71556734 - ORR1E LTR MaLR -41 318 1 7 1179 235 162 15 35 chr6 77960954 77961020 -71556017 - Lx6 LINE L1 -1821 5639 5542 7 1179 384 144 150 111 chr6 77961029 77961140 -71555897 + RMER17C LTR ERVK 89 184 -226 7 1179 528 16 0 0 chr6 77961140 77961201 -71555836 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 1179 378 0 0 0 chr6 77961201 77961242 -71555795 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1179 384 144 150 111 chr6 77961242 77961309 -71555728 + RMER17C LTR ERVK 185 274 -136 7 1179 385 381 49 21 chr6 77961714 77961856 -71555181 - RSINE1 SINE B4 -17 148 3 7 1179 561 228 0 58 chr6 77962944 77962974 -71554063 + L1M5 LINE L1 5648 5672 -501 7 1179 1863 76 0 27 chr6 77962974 77963231 -71553806 - L1_Mus1 LINE L1 -8 6559 6310 7 1179 3131 63 16 0 chr6 77963231 77963658 -71553379 + L1_Mus1 LINE L1 5637 6070 -497 7 1179 236 369 94 42 chr6 77964121 77964407 -71552630 + MLT1F2 LTR MaLR 242 542 -18 7 1179 5751 14 0 0 chr6 77964460 77965150 -71551887 + L1Md_T LINE L1 4895 5584 -299 7 1179 8353 37 0 3 chr6 77965152 77966151 -71550886 + L1Md_T LINE L1 5587 6582 0 7 1179 549 44 0 0 chr6 77966733 77966801 -71550236 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1179 499 347 45 5 chr6 77966888 77967088 -71549949 - B3 SINE B2 -8 208 1 7 1179 397 385 27 20 chr6 77967461 77967607 -71549430 - B3 SINE B2 -68 148 2 7 1179 739 290 45 10 chr6 77967816 77968018 -71549019 + B4A SINE B4 1 209 -83 7 1179 429 20 0 0 chr6 77968024 77968074 -71548963 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1179 203 175 0 17 chr6 77968173 77968231 -71548806 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1179 23 33 0 0 chr6 77968404 77968434 -71548603 + AT_rich Low_complexity Low_complexity 1 30 0 7 1179 3888 240 45 142 chr6 77968523 77969226 -71547811 - Lx6 LINE L1 -11 7449 6732 7 1179 180 0 0 0 chr6 77969226 77969246 -71547791 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 1179 983 167 0 0 chr6 77969246 77969408 -71547629 - B2_Mm2 SINE B2 -33 162 1 7 1179 3888 240 45 142 chr6 77969408 77969914 -71547123 - Lx6 LINE L1 -729 6731 6223 7 1179 2151 51 14 0 chr6 77969914 77970189 -71546848 + L1Md_A LINE L1 6303 6581 -1 7 1179 3888 240 45 142 chr6 77970189 77970269 -71546768 - Lx6 LINE L1 -1238 6222 6139 7 1179 942 189 50 0 chr6 77970276 77970456 -71546581 - ORR1B1 LTR MaLR 0 394 206 7 1179 5723 206 29 13 chr6 77970470 77971956 -71545081 - Lx6 LINE L1 -1396 6064 4554 7 1179 241 261 0 0 chr6 77972182 77972247 -71544790 + (TA)n Simple_repeat Simple_repeat 1 65 0 7 1179 267 54 0 0 chr6 77973160 77973197 -71543840 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1179 186 189 0 0 chr6 77974269 77974306 -71542731 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1179 562 286 83 147 chr6 77974387 77974813 -71542224 + MTE2a LTR MaLR 3 389 -30 7 1179 1679 198 92 20 chr6 77975356 77975800 -71541237 + RMER1C Other Other 852 1327 -15 7 1179 821 286 88 8 chr6 77975831 77976071 -71540966 - MTE2b LTR MaLR -116 263 5 7 1179 205 86 29 0 chr6 77976226 77976261 -71540776 + (TAAAAA)n Simple_repeat Simple_repeat 1 36 0 7 1179 2115 218 58 18 chr6 77976465 77976964 -71540073 - RLTR11A2 LTR ERVK 0 527 9 7 1179 33832 35 0 0 chr6 77976968 77982413 -71534624 + L1Md_T LINE L1 48 5589 -297 7 1179 8906 12 0 0 chr6 77982413 77983464 -71533573 + L1Md_T LINE L1 5590 6585 0 7 1179 21 0 0 0 chr6 77983493 77983514 -71533523 + AT_rich Low_complexity Low_complexity 1 21 0 7 1179 1055 258 60 15 chr6 77983822 77984161 -71532876 - MTD LTR MaLR -5 365 12 7 1179 3368 183 25 6 chr6 77985780 77986496 -71530541 - L1_Mm LINE L1 -519 5364 4635 7 1179 352 250 16 31 chr6 77986485 77986544 -71530493 + Lx6 LINE L1 7312 7370 -90 7 1179 447 19 0 0 chr6 77986544 77986596 -71530441 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1179 352 250 16 31 chr6 77986596 77986664 -71530373 + Lx6 LINE L1 7371 7437 -23 7 1179 278 258 0 0 chr6 77986678 77986744 -71530293 + GA-rich Low_complexity Low_complexity 2 67 0 7 147 36314 13 1 7 chr6 77986893 77992077 -71524960 + L1Md_A LINE L1 440 5585 -298 7 1180 8664 21 0 0 chr6 77992078 77993074 -71523963 + L1Md_A LINE L1 5587 6582 0 7 1180 30 59 0 0 chr6 77993150 77993201 -71523836 + AT_rich Low_complexity Low_complexity 1 51 0 7 1180 1948 170 82 107 chr6 77993205 77993739 -71523298 - RLTR28 LTR ERVL -3 521 1 7 1180 982 49 97 0 chr6 77994133 77994277 -71522760 + L1Md_F3 LINE L1 6402 6559 -25 7 1180 429 20 0 0 chr6 77994277 77994327 -71522710 + (TA)n Simple_repeat Simple_repeat 1 50 0 7 1180 232 307 51 26 chr6 77994526 77994643 -71522394 - B4A SINE B4 -28 264 145 7 1180 237 232 18 0 chr6 77994848 77994904 -71522133 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1180 3758 34 0 2 chr6 77995142 77995608 -71521429 + L1Md_F2 LINE L1 6097 6561 -21 7 1180 546 25 38 0 chr6 77995608 77995688 -71521349 + (TA)n Simple_repeat Simple_repeat 1 83 0 7 1180 22 0 0 0 chr6 77996370 77996392 -71520645 + AT_rich Low_complexity Low_complexity 1 22 0 7 1180 293 345 35 35 chr6 77996398 77996512 -71520525 + PB1D7 SINE Alu 6 119 -1 7 1180 279 0 0 0 chr6 77996551 77996582 -71520455 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1180 342 0 0 0 chr6 77996584 77996622 -71520415 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1180 395 357 81 76 chr6 77996670 77996838 -71520199 + B3A SINE B2 1 169 -29 7 1180 570 15 0 0 chr6 77996838 77996905 -71520132 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1180 204 40 0 0 chr6 77996905 77996930 -71520107 + (GA)n Simple_repeat Simple_repeat 2 26 0 7 1180 395 357 81 76 chr6 77996930 77996957 -71520080 + B3A SINE B2 170 197 -1 7 1180 653 274 26 36 chr6 77997683 77997848 -71519189 + B3A SINE B2 6 173 -25 7 1180 1986 219 69 30 chr6 77997848 77998356 -71518681 - RLTR11A LTR ERVK 0 528 1 7 1180 653 274 26 36 chr6 77998356 77998383 -71518654 + B3A SINE B2 174 196 -2 7 1180 509 221 8 34 chr6 77998414 77998531 -71518506 + PB1D9 SINE Alu 6 119 -1 7 1180 916 326 80 47 chr6 77998852 77999341 -71517696 + Lx8 LINE L1 6967 7471 -2 7 1180 627 215 186 0 chr6 77999573 77999745 -71517292 - B3 SINE B2 -7 209 6 7 1180 408 274 89 59 chr6 77999777 77999979 -71517058 - MTEa LTR MaLR -114 265 58 7 1180 318 50 0 0 chr6 78000311 78000351 -71516686 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1180 290 243 25 75 chr6 78002584 78002664 -71514373 - RMER15 LTR ERVL 0 575 500 2 1180 842 333 117 17 chr6 78002832 78003183 -71513854 + MTD LTR MaLR 17 402 -17 3 1180 3991 73 36 7 chr6 78003316 78003868 -71513169 + L1Md_F2 LINE L1 6015 6582 0 4 1180 515 328 109 83 chr6 78003875 78003910 -71513127 - MTE2a LTR MaLR -31 348 303 5 1180 285 51 0 0 chr6 78003910 78003949 -71513088 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 6 1180 515 328 109 83 chr6 78003949 78004252 -71512785 - MTE2a LTR MaLR -77 302 1 5 1180 203 61 30 0 chr6 78004764 78004797 -71512240 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1180 453 19 0 0 chr6 78005444 78005498 -71511539 + (TATG)n Simple_repeat Simple_repeat 4 57 0 8 1180 460 278 53 101 chr6 78006192 78006380 -71510657 - B3A SINE B2 -16 182 4 9 1180 347 315 133 0 chr6 78006776 78006957 -71510080 + Lx7 LINE L1 6973 7177 -519 1 1180 399 41 0 0 chr6 78008835 78008884 -71508153 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1180 309 336 118 35 chr6 78009012 78009238 -71507799 - MLT1F2 LTR MaLR 0 654 347 1 1180 250 214 0 0 chr6 78009384 78009440 -71507597 + MLT2B2 LTR ERVL 507 562 0 1 1180 234 330 32 11 chr6 78009585 78009680 -71507357 - ORR1E LTR MaLR 0 379 283 1 1180 421 304 99 23 chr6 78009738 78009910 -71507127 - ORR1E LTR MaLR -167 192 8 1 1180 241 294 0 0 chr6 78010154 78010215 -71506822 - ID4_ SINE ID -61 91 31 1 1180 249 188 58 72 chr6 78010271 78010340 -71506697 + RMER6C LTR ERVK 532 599 -91 1 1180 420 67 0 0 chr6 78011424 78011484 -71505553 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1180 771 51 17 8 chr6 78012322 78012440 -71504597 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 1 1180 543 128 0 0 chr6 78012444 78012530 -71504507 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 1180 201 108 0 0 chr6 78012621 78012658 -71504379 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 2 1180 620 332 54 48 chr6 78012775 78013091 -71503946 + ORR1E LTR MaLR 1 318 -41 2 1180 252 88 0 50 chr6 78013092 78013152 -71503885 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 2 1180 7304 143 79 14 chr6 78013170 78014653 -71502384 - Lx3B LINE L1 -4 6969 5317 2 1180 473 35 0 0 chr6 78014646 78014704 -71502333 - L1Md_F2 LINE L1 -533 6049 5992 2 1180 1845 80 0 0 chr6 78014698 78014949 -71502088 - L1Md_F2 LINE L1 -71 5812 5562 2 1180 3044 155 30 9 chr6 78014943 78015989 -71501048 - L1_Mur1 LINE L1 -4130 1756 687 2 1180 1785 238 99 3 chr6 78016362 78016976 -71500061 - Lx9 LINE L1 -7 7637 6965 2 1180 2180 266 36 10 chr6 78017345 78017930 -71499107 + Lx9 LINE L1 6333 6932 -712 2 1180 540 45 0 0 chr6 78017930 78017997 -71499040 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 1180 325 363 21 49 chr6 78018022 78018164 -71498873 - ID_B1 SINE B4 -9 215 78 2 1180 609 14 0 0 chr6 78018287 78018357 -71498680 + (TATG)n Simple_repeat Simple_repeat 3 72 0 3 1180 1079 212 39 4 chr6 78019669 78019901 -71497136 - RLTR24 LTR ERV1 -84 445 206 3 1180 7434 151 57 13 chr6 78019962 78021385 -71495652 - Lx2 LINE L1 0 6997 5341 3 1180 198 0 0 0 chr6 78021385 78021407 -71495630 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3 1180 1016 124 7 0 chr6 78021408 78021553 -71495484 - B1_Mm SINE Alu -1 146 1 3 1180 1983 183 393 0 chr6 78021553 78021941 -71495096 - Lx2 LINE L1 -537 5340 4854 3 1180 27 0 0 0 chr6 78022251 78022278 -71494759 + AT_rich Low_complexity Low_complexity 1 27 0 3 1180 4094 145 26 6 chr6 78022832 78023514 -71493523 - Lx LINE L1 0 6654 5959 3 1180 795 304 18 4 chr6 78023543 78023771 -71493266 + RMER15 LTR ERVL 327 557 -18 3 1180 668 294 56 23 chr6 78023789 78024182 -71492855 - L1M4 LINE L1 -445 5739 5334 3 1180 393 256 138 4 chr6 78024292 78024414 -71492623 + MER20 DNA MER1_type 29 160 -623 3 1180 199 270 82 82 chr6 78025264 78025361 -71491676 - MER5A DNA MER1_type -6 183 87 4 1180 594 352 57 4 chr6 78025524 78025752 -71491285 + B4A SINE B4 2 241 -51 4 1180 454 336 62 39 chr6 78025752 78025942 -71491095 + B3A SINE B2 14 205 -11 4 1180 31 44 0 0 chr6 78025942 78025987 -71491050 + AT_rich Low_complexity Low_complexity 1 45 0 4 1180 240 35 0 0 chr6 78026023 78026052 -71490985 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 4 1180 766 264 42 47 chr6 78027612 78027827 -71489210 + ID_B1 SINE B4 2 215 -9 4 1180 410 385 63 22 chr6 78028294 78028562 -71488475 + B4A SINE B4 5 283 -9 4 1180 327 164 0 0 chr6 78028601 78028662 -71488375 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1180 203 196 0 21 chr6 78029689 78029736 -71487301 + A-rich Low_complexity Low_complexity 3 48 0 4 1180 442 331 7 0 chr6 78029861 78029997 -71487040 - B1F SINE Alu -12 137 1 4 1180 196 304 13 80 chr6 78031086 78031161 -71485876 + MIR SINE MIR 159 228 -34 5 1180 287 228 60 82 chr6 78031395 78031529 -71485508 + RMER15 LTR ERVL 29 159 -416 5 1180 898 262 24 37 chr6 78031525 78031771 -71485266 + RMER15 LTR ERVL 265 507 -68 5 1180 342 0 0 0 chr6 78032937 78032975 -71484062 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 5 1180 1605 211 13 24 chr6 78032977 78033356 -71483681 - RMER1B Other Other -15 1051 677 5 1180 852 333 80 38 chr6 78033351 78033750 -71483287 - RMER1A Other Other -496 534 119 5 1180 344 350 87 30 chr6 78034234 78034566 -71482471 - MTEa LTR MaLR 0 379 6 5 1180 437 323 14 62 chr6 78034949 78035157 -71481880 + B3A SINE B2 1 198 0 5 1180 1510 209 57 64 chr6 78035246 78035670 -71481367 + MTC LTR MaLR 1 421 0 5 1180 2210 198 77 19 chr6 78036133 78036653 -71480384 + Lx2 LINE L1 6428 6977 -20 5 1180 1165 55 0 0 chr6 78036655 78036801 -71480236 + B1_Mm SINE Alu 2 147 0 5 1180 303 93 0 0 chr6 78036801 78036844 -71480193 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1180 386 309 63 57 chr6 78037501 78037676 -71479361 - B3A SINE B2 -6 192 17 6 1180 565 324 0 46 chr6 78038225 78038377 -71478660 + RSINE1 SINE B4 21 165 0 6 1180 182 118 29 0 chr6 78038435 78038469 -71478568 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 1180 238 336 24 16 chr6 78038542 78038666 -71478371 + GA-rich Low_complexity Low_complexity 6 130 0 6 1180 653 140 7 0 chr6 78038666 78038816 -71478221 + (GA)n Simple_repeat Simple_repeat 1 151 0 6 1180 333 327 42 24 chr6 78038985 78039151 -71477886 + L2a LINE L2 3257 3425 -1 6 1180 393 328 70 5 chr6 78039478 78039665 -71477372 + Lx8 LINE L1 7079 7277 -196 6 1180 348 24 0 0 chr6 78039738 78039779 -71477258 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1180 468 259 18 9 chr6 78039830 78039939 -71477098 - MTE2b LTR MaLR -269 110 1 6 1180 289 0 0 47 chr6 78040105 78040148 -71476889 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 7 1180 466 194 53 56 chr6 78040168 78040405 -71476632 - RMER4B LTR ERVK -23 588 343 7 1180 318 325 31 77 chr6 78040412 78040542 -71476495 - B1F SINE Alu -8 141 18 7 1180 489 309 32 115 chr6 78040686 78041000 -71476037 - B4A SINE B4 -2 290 3 7 1180 579 273 109 49 chr6 78041083 78041391 -71475646 + MER47B DNA MER2_type 2 397 -21 7 1180 4897 55 0 0 chr6 78041586 78042187 -71474850 + L1_Mus1 LINE L1 5967 6567 0 7 1180 330 45 0 0 chr6 78042193 78042237 -71474800 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 7 1180 352 294 12 58 chr6 78042504 78042696 -71474341 - MIRc SINE MIR -60 202 24 7 1180 540 181 5 2 chr6 78043181 78043276 -71473761 + ORR1A3 LTR MaLR 6 163 -196 7 1180 3075 55 13 0 chr6 78043276 78043659 -71473378 - RLTR10 LTR ERVK -2 388 1 7 1180 259 303 127 53 chr6 78043659 78043740 -71473297 + ORR1A3 LTR MaLR 164 248 -111 7 1180 7428 39 0 2 chr6 78043740 78044670 -71472367 - RLTR10-int LTR ERVK -70 1917 990 8 1180 3632 42 71 0 chr6 78045199 78045780 -71471257 - RLTR10-int LTR ERVK -995 992 302 8 1180 672 90 20 0 chr6 78045780 78045880 -71471157 - RLTR10 LTR ERVK 0 411 310 8 1180 1319 52 6 0 chr6 78045921 78046093 -71470944 - RLTR10-int LTR ERVK -1775 212 40 8 1180 2905 62 49 0 chr6 78046104 78046474 -71470563 - RLTR10 LTR ERVK -2 388 1 8 1180 1575 98 44 0 chr6 78046474 78046699 -71470338 + ORR1A2 LTR MaLR 93 327 0 8 1180 353 309 38 124 chr6 78047368 78047553 -71469484 - L1MC2 LINE L1 -25 6319 6151 8 1180 351 44 0 0 chr6 78047957 78048002 -71469035 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1180 632 296 20 0 chr6 78048004 78048156 -71468881 - B3A SINE B2 -42 156 2 8 1180 495 0 0 0 chr6 78048174 78048229 -71468808 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 8 1180 434 105 23 0 chr6 78048751 78048837 -71468200 + (TATG)n Simple_repeat Simple_repeat 4 91 0 8 1180 811 250 68 0 chr6 78048837 78049013 -71468024 - B3 SINE B2 -28 188 1 8 1180 491 297 56 37 chr6 78049157 78049318 -71467719 - RSINE1 SINE B4 0 165 2 8 1180 430 272 149 34 chr6 78049845 78050020 -71467017 + B3 SINE B2 13 207 -9 8 1180 926 305 74 17 chr6 78051149 78051499 -71465538 + MTD LTR MaLR 6 375 -44 9 1180 3618 196 85 21 chr6 78051516 78052268 -71464769 - RMER13A LTR ERVK -60 800 1 9 1180 256 299 40 30 chr6 78052421 78052521 -71464516 - MLT1H LTR MaLR 0 549 449 9 1180 390 57 0 0 chr6 78052649 78052702 -71464335 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1180 386 337 27 85 chr6 78053080 78053116 -71463921 - B3A SINE B2 -12 186 157 9 1180 423 0 0 0 chr6 78053116 78053163 -71463874 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1180 386 337 27 85 chr6 78053163 78053274 -71463763 - B3A SINE B2 -42 156 48 9 1180 1521 40 0 10 chr6 78053274 78053476 -71463561 + L1Md_F2 LINE L1 6382 6581 -1 9 1180 386 337 27 85 chr6 78053476 78053515 -71463522 - B3A SINE B2 -151 47 10 9 1180 458 107 146 0 chr6 78053675 78053778 -71463259 - L1Md_F2 LINE L1 -12 6570 6453 9 1180 1111 263 19 8 chr6 78054055 78054312 -71462725 - MLT1E1 LTR MaLR 0 654 395 9 1180 354 98 0 0 chr6 78054479 78054530 -71462507 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1180 1216 299 111 27 chr6 78054629 78055296 -71461741 - Lx8 LINE L1 -4 7469 6747 1 1180 704 344 14 31 chr6 78055298 78055520 -71461517 - B4A SINE B4 -72 220 3 1 1180 279 294 128 0 chr6 78055527 78055636 -71461401 - MLT1E1 LTR MaLR -395 259 137 9 1180 244 200 22 56 chr6 78055661 78055751 -71461286 + L1MB8 LINE L1 6087 6173 -5 1 1180 300 53 0 0 chr6 78056011 78056049 -71460988 + (TAA)n Simple_repeat Simple_repeat 1 38 0 1 1180 870 290 69 82 chr6 78056770 78057159 -71459878 - MTE2a LTR MaLR 0 419 24 1 1180 276 296 0 0 chr6 78057915 78057986 -71459051 + ID4_ SINE ID 2 72 -11 1 1180 6287 50 21 0 chr6 78058334 78059128 -71457909 - L1Md_F2 LINE L1 -12 6570 5760 1 1180 261 196 0 0 chr6 78059464 78059510 -71457527 + T-rich Low_complexity Low_complexity 1 46 0 1 1180 1072 107 0 17 chr6 78059511 78059692 -71457345 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1 1180 676 279 6 19 chr6 78059702 78059863 -71457174 - B3A SINE B2 -24 174 16 1 1180 276 333 14 22 chr6 78060096 78060234 -71456803 + MER5A DNA MER1_type 27 163 -26 1 1180 242 0 61 0 chr6 78060857 78060890 -71456147 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1180 662 251 70 6 chr6 78061001 78061173 -71455864 + MER5A DNA MER1_type 7 189 0 1 1180 310 331 68 74 chr6 78061443 78061606 -71455431 + RSINE1 SINE B4 3 164 -1 1 1180 210 98 19 38 chr6 78061894 78061947 -71455090 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 1 1180 743 320 35 0 chr6 78062171 78062371 -71454666 + ID_B1 SINE B4 16 222 -2 1 1180 189 107 0 0 chr6 78062452 78062480 -71454557 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1180 330 291 14 82 chr6 78062487 78062633 -71454404 - MIRb SINE MIR -73 195 60 1 1180 216 0 0 0 chr6 78063473 78063497 -71453540 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1180 1422 265 48 11 chr6 78063547 78063902 -71453135 - MTEa LTR MaLR -3 376 9 1 1180 1301 266 24 18 chr6 78064449 78064786 -71452251 + MTD LTR MaLR 1 339 -80 1 1180 288 0 0 0 chr6 78064835 78064867 -71452170 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1180 636 38 0 0 chr6 78064867 78064945 -71452092 + (GA)n Simple_repeat Simple_repeat 1 79 0 1 1180 183 80 0 0 chr6 78066553 78066578 -71450459 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1180 23 54 0 0 chr6 78067195 78067232 -71449805 + AT_rich Low_complexity Low_complexity 1 37 0 1 1180 976 111 0 0 chr6 78068339 78068474 -71448563 + B1_Mus1 SINE Alu 2 136 -12 1 1180 431 0 0 36 chr6 78068474 78068530 -71448507 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 1 1180 598 322 65 15 chr6 78072671 78072933 -71444104 + B4 SINE B4 2 276 -16 1 1180 380 351 67 0 chr6 78073028 78073162 -71443875 + RSINE1 SINE B4 3 145 -20 1 1180 360 0 0 0 chr6 78073162 78073202 -71443835 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1180 459 0 0 0 chr6 78073202 78073252 -71443785 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1180 250 250 0 0 chr6 78074146 78074214 -71442823 + T-rich Low_complexity Low_complexity 1 68 0 1 1180 2700 237 108 30 chr6 78074982 78075806 -71441231 - Lx9 LINE L1 -2 7642 6755 1 1180 22 0 0 0 chr6 78075839 78075861 -71441176 + AT_rich Low_complexity Low_complexity 1 22 0 1 1180 616 234 44 0 chr6 78076013 78076150 -71440887 - B1_Mur1 SINE Alu -2 147 5 1 1180 378 61 0 0 chr6 78076891 78076940 -71440097 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1180 10020 207 48 88 chr6 78077104 78079362 -71437675 - L1_Mur3 LINE L1 -481 5399 3256 1 1180 752 0 0 11 chr6 78079362 78079451 -71437586 + (TTC)n Simple_repeat Simple_repeat 3 90 0 1 1180 10020 207 48 88 chr6 78079451 78079503 -71437534 - L1_Mur3 LINE L1 -2625 3255 3205 1 1180 3030 192 129 78 chr6 78079503 78080361 -71436676 - RMER19B LTR ERVK 0 902 1 1 1180 10020 207 48 88 chr6 78080361 78080720 -71436317 - L1_Mur3 LINE L1 -2676 3204 2842 1 1180 2489 153 71 4 chr6 78080720 78081187 -71435850 + Lx2 LINE L1 6499 6996 -1 1 1180 10020 207 48 88 chr6 78081187 78081581 -71435456 - L1_Mur3 LINE L1 -3039 2841 2463 1 1180 324 0 0 0 chr6 78081581 78081617 -71435420 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1180 10020 207 48 88 chr6 78081617 78081739 -71435298 - L1_Mur3 LINE L1 -3418 2462 2341 1 1180 15179 114 109 22 chr6 78081756 78083824 -71433213 - L1_Mus3 LINE L1 -7 6631 4623 1 1180 975 123 7 0 chr6 78083824 78083970 -71433067 - B1_Mus1 SINE Alu -1 147 1 1 1180 15179 143 205 36 chr6 78083970 78085973 -71431064 - L1_Mus3 LINE L1 -1261 4622 1994 1 1180 625 333 79 7 chr6 78086239 78086517 -71430520 - MLT2B2 LTR ERVL -213 302 5 1 1180 221 368 13 0 chr6 78086946 78087022 -71430015 - PB1D10 SINE Alu -1 116 40 1 1180 29 28 0 0 chr6 78087230 78087266 -71429771 + AT_rich Low_complexity Low_complexity 1 36 0 1 1180 211 350 12 24 chr6 78087399 78087481 -71429556 + MIR3 SINE MIR 114 194 -14 1 1180 1812 211 86 30 chr6 78087810 78087970 -71429067 + RMER1C Other Other 846 1033 -309 1 1180 2654 81 0 6 chr6 78087970 78088332 -71428705 + L1Md_F2 LINE L1 6213 6572 -10 1 1180 1812 211 86 30 chr6 78088332 78088635 -71428402 + RMER1C Other Other 1034 1334 -8 1 1180 712 286 27 41 chr6 78090216 78090435 -71426602 - B4A SINE B4 -74 218 3 1 1180 643 247 115 18 chr6 78090605 78090641 -71426396 - B3 SINE B2 0 216 181 1 1180 348 24 0 0 chr6 78090641 78090682 -71426355 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1180 643 247 115 18 chr6 78090682 78090810 -71426227 - B3 SINE B2 -36 180 36 1 1180 716 321 105 6 chr6 78091648 78091999 -71425038 + Lx8 LINE L1 6766 7151 -322 1 1180 237 219 88 71 chr6 78092000 78092113 -71424924 - MER33 DNA MER1_type -38 286 172 1 1180 1092 264 32 7 chr6 78092149 78092428 -71424609 + L1_Mur3 LINE L1 298 583 -7145 1 1180 4111 245 45 81 chr6 78092426 78094608 -71422429 + L1_Mur3 LINE L1 967 3067 -2810 1 1180 3986 224 10 140 chr6 78094608 78095229 -71421808 + L1_Mur3 LINE L1 3729 4215 -1662 1 1180 7913 53 1 3 chr6 78095229 78096212 -71420825 + L1Md_F2 LINE L1 5588 6568 -14 1 1180 210 37 0 0 chr6 78096218 78096245 -71420792 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1180 3986 224 10 140 chr6 78096245 78097015 -71420022 + L1_Mur3 LINE L1 4216 4945 -932 1 1180 11949 165 14 8 chr6 78097081 78099836 -71417201 + Lx LINE L1 3547 6325 -329 1 1180 481 254 86 27 chr6 78099867 78100053 -71416984 - Lx8 LINE L1 -8 7465 7269 1 1180 7743 71 2 1 chr6 78100187 78101279 -71415758 - L1_Mus2 LINE L1 0 6566 5475 1 1180 263 254 63 101 chr6 78101329 78101487 -71415550 - RLTR15 LTR ERVK -146 213 62 1 1180 284 281 104 0 chr6 78101593 78101689 -71415348 - Lx8 LINE L1 -259 7214 7109 1 1180 242 214 49 0 chr6 78102242 78102404 -71414633 + (TAGA)n Simple_repeat Simple_repeat 1 169 0 1 1180 212 135 83 0 chr6 78102454 78102550 -71414487 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 1 1180 180 164 45 0 chr6 78102600 78102667 -71414370 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 1 1180 321 316 64 6 chr6 78104717 78104873 -71412164 - L1M6 LINE L1 -6328 168 4 1 1180 35333 36 0 0 chr6 78104933 78110538 -71406499 + L1Md_T LINE L1 1 5589 -297 1 1180 8967 6 0 0 chr6 78110538 78111534 -71405503 + L1Md_T LINE L1 5590 6585 0 1 1180 3084 261 36 20 chr6 78111556 78112312 -71404725 - Lx5 LINE L1 -42 7008 6241 1 1180 24 67 0 0 chr6 78112852 78112897 -71404140 + AT_rich Low_complexity Low_complexity 1 45 0 1 1180 2029 124 71 3 chr6 78112909 78113217 -71403820 - Lx LINE L1 -1 6653 6325 1 1180 497 136 38 28 chr6 78113214 78113320 -71403717 + Lx LINE L1 6547 6653 -1 1 1180 2634 183 33 117 chr6 78113882 78114543 -71402494 - RMER19C LTR ERVK -5 606 1 1 1180 696 86 0 0 chr6 78114571 78114676 -71402361 + (TG)n Simple_repeat Simple_repeat 1 105 0 1 1180 2228 183 11 38 chr6 78114718 78115167 -71401870 + RMER10A LTR ERVL 1 437 -5 1 1180 801 92 0 0 chr6 78115229 78115349 -71401688 + (TC)n Simple_repeat Simple_repeat 1 120 0 1 1180 521 320 0 0 chr6 78115352 78115474 -71401563 - B3A SINE B2 -74 124 3 1 1180 1162 45 6 13 chr6 78116792 78116950 -71400087 + (TTCTCC)n Simple_repeat Simple_repeat 6 162 0 1 1180 201 54 16 82 chr6 78116951 78117012 -71400025 + CT-rich Low_complexity Low_complexity 3 59 0 1 1180 946 133 179 0 chr6 78117014 78117187 -71399850 - Lx LINE L1 0 6654 6451 1 1180 430 354 7 14 chr6 78117391 78117537 -71399500 + B3A SINE B2 4 148 -50 1 1180 282 352 23 31 chr6 78117703 78117832 -71399205 + ORR1E LTR MaLR 69 196 -163 1 1180 1950 173 59 38 chr6 78117925 78118346 -71398691 - RMER10A LTR ERVL -12 430 1 1 1181 390 282 220 29 chr6 78119150 78119391 -71397646 + RMER15 LTR ERVL 275 561 -14 1 1181 495 300 103 107 chr6 78119628 78119919 -71397118 + B4A SINE B4 3 292 0 1 1181 22 35 0 0 chr6 78120471 78120500 -71396537 + AT_rich Low_complexity Low_complexity 1 29 0 1 1181 493 231 109 139 chr6 78120921 78121122 -71395915 + B3A SINE B2 4 198 0 1 1181 27 0 0 0 chr6 78121124 78121151 -71395886 + AT_rich Low_complexity Low_complexity 1 27 0 1 1181 398 314 48 36 chr6 78121183 78121348 -71395689 - B3 SINE B2 -12 204 38 1 1181 504 275 94 17 chr6 78121749 78121930 -71395107 - MLT1B LTR MaLR -8 382 188 1 1181 233 164 98 0 chr6 78122373 78122434 -71394603 + (TCTG)n Simple_repeat Simple_repeat 4 70 0 1 1181 304 315 22 0 chr6 78122471 78122560 -71394477 - RSINE1 SINE B4 -63 102 12 1 1181 387 0 0 0 chr6 78122961 78123004 -71394033 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1181 3333 152 20 9 chr6 78123183 78123741 -71393296 - L1_Mus4 LINE L1 -166 5717 5154 1 1181 6701 91 18 8 chr6 78123738 78124670 -71392367 + L1_Mus4 LINE L1 5692 6633 -3 1 1181 189 0 0 0 chr6 78125491 78125512 -71391525 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1181 3933 136 23 31 chr6 78125591 78126334 -71390703 - RMER17A LTR ERVK -14 737 1 1 1181 427 171 0 19 chr6 78126336 78126443 -71390594 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1181 3479 53 0 0 chr6 78127386 78127837 -71389200 + MusHAL1 LINE L1 1633 2083 -629 1 1181 1905 164 54 9 chr6 78127840 78127892 -71389145 - ORR1B1 LTR MaLR -46 348 296 1 1181 2978 125 51 4 chr6 78127892 78128342 -71388695 - Lx LINE L1 -1 6653 6183 1 1181 1905 164 54 9 chr6 78128342 78128622 -71388415 - ORR1B1 LTR MaLR -99 295 2 1 1181 953 293 151 3 chr6 78129336 78129654 -71387383 + MTEa LTR MaLR 3 367 -12 1 1181 297 0 0 0 chr6 78130780 78130813 -71386224 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1181 23 0 0 0 chr6 78130813 78130836 -71386201 + AT_rich Low_complexity Low_complexity 1 23 0 1 1181 339 378 6 41 chr6 78130891 78131062 -71385975 - MT2A LTR ERVL -160 373 209 1 1181 669 283 42 11 chr6 78132584 78132773 -71384264 + B3 SINE B2 17 211 -5 2 1181 207 313 73 60 chr6 78133054 78133191 -71383846 + MIRc SINE MIR 10 152 -116 2 1181 617 102 0 9 chr6 78133769 78133878 -71383159 + (TG)n Simple_repeat Simple_repeat 1 108 0 2 1181 1078 118 0 8 chr6 78134246 78134485 -71382552 + (TTTC)n Simple_repeat Simple_repeat 1 236 0 2 1181 412 316 101 6 chr6 78134515 78134684 -71382353 - B3A SINE B2 -11 187 3 2 1181 22 0 0 0 chr6 78134723 78134745 -71382292 + AT_rich Low_complexity Low_complexity 1 22 0 2 1181 1115 313 79 49 chr6 78136193 78136810 -71380227 + Lx9 LINE L1 6790 7425 -219 2 1181 5155 101 8 11 chr6 78137039 78137813 -71379224 + Lx3_Mus LINE L1 5761 6533 -476 2 1181 3391 54 3 0 chr6 78137953 78138344 -71378693 - L1_Mus1 LINE L1 0 6567 6176 2 1181 329 194 55 64 chr6 78139282 78139392 -71377645 - Lx LINE L1 -4 7640 7532 2 1181 668 35 11 0 chr6 78139487 78139574 -71377463 + (TTC)n Simple_repeat Simple_repeat 3 90 0 2 1181 399 21 0 0 chr6 78139574 78139622 -71377415 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1181 582 276 106 72 chr6 78139652 78139859 -71377178 - ID_B1 SINE B4 0 224 11 2 1181 191 61 0 29 chr6 78140300 78140334 -71376703 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 2 1181 1521 262 15 0 chr6 78140447 78140787 -71376250 + Lx6 LINE L1 6912 7256 -204 2 1181 234 0 0 0 chr6 78140824 78140850 -71376187 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1181 694 142 162 30 chr6 78140865 78141032 -71376005 - Lx LINE L1 0 6654 6466 2 1181 880 248 0 5 chr6 78141031 78141234 -71375803 + Lx6 LINE L1 7247 7448 -12 2 1181 495 312 74 50 chr6 78141308 78141605 -71375432 - MTD LTR MaLR -14 405 102 2 1181 1336 140 257 0 chr6 78141614 78141705 -71375332 + ORR1A1 LTR MaLR 6 125 -221 2 1181 1161 58 7 0 chr6 78141705 78141842 -71375195 + B1_Mm SINE Alu 1 138 -9 2 1181 1336 140 257 0 chr6 78141842 78142015 -71375022 + ORR1A1 LTR MaLR 126 337 -9 2 1181 358 28 0 78 chr6 78142185 78142262 -71374775 + (CAAAAA)n Simple_repeat Simple_repeat 1 71 0 2 1181 360 301 86 19 chr6 78142279 78142384 -71374653 - B3A SINE B2 -78 120 9 2 1181 1143 186 23 9 chr6 78142400 78142617 -71374420 + URR1B DNA MER1_type 6 225 0 2 1181 243 0 0 0 chr6 78143767 78143794 -71373243 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1181 560 325 0 45 chr6 78144430 78144607 -71372430 + B4 SINE B4 110 278 -14 2 1181 198 143 0 0 chr6 78144625 78144660 -71372377 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1181 1064 198 200 22 chr6 78144910 78145082 -71371955 - ORR1D1 LTR MaLR -3 371 171 2 1181 641 0 45 0 chr6 78145082 78145171 -71371866 + (GA)n Simple_repeat Simple_repeat 1 93 0 2 1181 1064 198 200 22 chr6 78145171 78145313 -71371724 - ORR1D1 LTR MaLR -204 170 2 2 1181 22 0 0 0 chr6 78145644 78145666 -71371371 + AT_rich Low_complexity Low_complexity 1 22 0 2 1181 578 258 57 135 chr6 78145939 78146041 -71370996 + B3 SINE B2 1 87 -129 2 1181 2983 53 0 11 chr6 78146041 78146400 -71370637 + L1Md_F2 LINE L1 6216 6570 -12 2 1181 578 258 57 135 chr6 78146400 78146526 -71370511 + B3 SINE B2 88 211 -5 2 1181 794 220 75 32 chr6 78146556 78146744 -71370293 + B3A SINE B2 1 196 -2 2 1181 388 383 66 40 chr6 78146770 78147192 -71369845 - LTR40a LTR ERVL -4 515 83 2 1181 220 311 207 0 chr6 78147608 78147743 -71369294 + MIRb SINE MIR 63 225 -43 2 1181 216 0 0 0 chr6 78148253 78148277 -71368760 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1181 410 399 67 8 chr6 78148372 78148640 -71368397 + LTR40a LTR ERVL 74 357 -162 2 1181 267 253 0 13 chr6 78148759 78148835 -71368202 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1181 534 43 0 0 chr6 78148835 78148904 -71368133 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 1181 342 333 62 27 chr6 78149469 78149694 -71367343 + MIRc SINE MIR 32 264 -4 2 1181 360 0 0 0 chr6 78150946 78150986 -71366051 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1181 195 42 0 0 chr6 78150989 78151013 -71366024 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1181 300 175 52 17 chr6 78151013 78151071 -71365966 + HAL1-3A_ME LINE L1 1975 2034 -824 2 1181 288 322 152 10 chr6 78151192 78151396 -71365641 + L2a LINE L2 3193 3425 -1 2 1181 258 293 0 13 chr6 78151404 78151480 -71365557 - MIR SINE MIR -123 139 65 2 1181 229 328 0 0 chr6 78151878 78151939 -71365098 + (TCTCTG)n Simple_repeat Simple_repeat 5 65 0 2 1181 229 217 0 32 chr6 78151939 78152001 -71365036 + MurSatRep1 Unknown Unknown 229 288 -1849 2 1181 7241 102 16 8 chr6 78152660 78153108 -71363929 - L1_Mus4 LINE L1 -9 6627 6178 2 1181 1487 204 45 36 chr6 78153108 78153464 -71363573 - RLTR10D LTR ERVK 0 359 1 2 1181 7241 102 16 8 chr6 78153464 78154031 -71363006 - L1_Mus4 LINE L1 -459 6177 5604 2 1181 6316 158 3 4 chr6 78154029 78155070 -71361967 + L1_Mus4 LINE L1 4533 5572 -311 2 1181 211 217 0 0 chr6 78157661 78157707 -71359330 + A-rich Low_complexity Low_complexity 2 47 0 2 1181 35740 51 1 9 chr6 78158093 78163283 -71353754 + L1Md_F2 LINE L1 441 5587 -296 2 1181 8298 55 10 2 chr6 78163284 78164270 -71352767 + L1Md_F2 LINE L1 5589 6582 0 2 1181 5118 134 16 38 chr6 78164294 78164585 -71352452 + Lx2 LINE L1 5783 6079 -918 2 1181 3872 67 21 0 chr6 78164585 78165050 -71351987 + MT2C_Mm LTR ERVL 1 475 0 2 1181 5118 134 16 38 chr6 78165050 78165638 -71351399 + Lx2 LINE L1 6080 6643 -354 2 1181 1339 119 35 0 chr6 78165638 78165840 -71351197 + Lx2 LINE L1 6775 6983 -14 2 1181 36 23 0 0 chr6 78167341 78167384 -71349653 + AT_rich Low_complexity Low_complexity 1 43 0 2 1181 389 172 0 22 chr6 78167388 78167477 -71349560 + L1Md_F3 LINE L1 6495 6581 -3 2 1181 312 166 18 19 chr6 78167595 78167670 -71349367 + B2_Mm2 SINE B2 2 73 -143 2 1181 347 262 0 123 chr6 78167671 78167793 -71349244 + Lx8 LINE L1 7187 7293 -180 2 1181 319 241 239 9 chr6 78167903 78168016 -71349021 + ID_B1 SINE B4 21 159 -65 2 1181 488 221 55 11 chr6 78168042 78168225 -71348812 - L1_Mur3 LINE L1 -1600 4280 4090 2 1181 525 32 0 0 chr6 78168485 78168548 -71348489 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1181 3063 44 8 23 chr6 78168549 78168945 -71348092 + L1Md_F3 LINE L1 6193 6582 -2 2 1181 181 77 24 49 chr6 78169317 78169358 -71347679 + A-rich Low_complexity Low_complexity 3 42 0 2 1181 191 125 25 0 chr6 78170328 78170368 -71346669 + (TATG)n Simple_repeat Simple_repeat 1 41 0 2 1181 307 335 0 0 chr6 78170494 78170715 -71346322 + (TG)n Simple_repeat Simple_repeat 1 221 0 2 1181 672 369 70 10 chr6 78170919 78171291 -71345746 + MER74C LTR ERVL 13 407 -53 2 1181 1805 31 18 4 chr6 78171291 78171520 -71345517 + L1Md_F3 LINE L1 6352 6583 -1 2 1181 672 369 70 10 chr6 78171520 78171549 -71345488 + MER74C LTR ERVL 408 437 -23 2 1181 969 296 67 65 chr6 78171825 78172335 -71344702 - Lx8 LINE L1 -4 7469 6959 2 1181 1169 190 17 22 chr6 78173206 78173437 -71343600 - RLTR20B2 LTR ERVK 0 560 331 2 1181 420 20 0 0 chr6 78173514 78173563 -71343474 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1181 551 318 26 66 chr6 78173569 78173872 -71343165 - B4 SINE B4 0 292 2 2 1181 249 109 0 0 chr6 78174481 78174527 -71342510 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 2 1181 28 0 0 0 chr6 78174707 78174735 -71342302 + AT_rich Low_complexity Low_complexity 1 28 0 2 1181 1161 69 0 0 chr6 78175023 78175167 -71341870 - B1_Mus2 SINE Alu 0 147 4 2 1181 6144 97 16 1 chr6 78175509 78176428 -71340609 + L1_Mus3 LINE L1 5701 6633 -5 2 1181 183 100 0 0 chr6 78176526 78176556 -71340481 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1181 396 103 0 0 chr6 78176556 78176614 -71340423 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1181 2855 60 23 28 chr6 78176800 78177194 -71339843 + L1Md_F2 LINE L1 6191 6582 0 2 1181 3417 66 0 5 chr6 78177265 78177707 -71339330 - L1_Mus1 LINE L1 0 6567 6128 2 1181 695 62 0 10 chr6 78177748 78177846 -71339191 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 2 1181 470 276 59 15 chr6 78178095 78178231 -71338806 + MTD LTR MaLR 84 225 -194 2 1181 8344 112 22 10 chr6 78178232 78179562 -71337475 + Lx2 LINE L1 5649 6994 -3 2 1181 536 296 92 6 chr6 78180064 78180237 -71336800 + MTD LTR MaLR 232 419 0 2 1181 462 290 43 6 chr6 78181604 78181767 -71335270 + Lx6 LINE L1 7281 7449 -11 2 1181 23 33 0 0 chr6 78181767 78181797 -71335240 + AT_rich Low_complexity Low_complexity 1 30 0 2 1181 537 329 51 29 chr6 78181797 78181975 -71335062 + B3A SINE B2 27 208 -8 2 1181 4607 47 0 2 chr6 78182926 78183482 -71333555 + L1Md_F2 LINE L1 6016 6570 -12 2 1181 1555 193 60 18 chr6 78183628 78184014 -71333023 + Lx2B LINE L1 6585 6986 -14 2 1181 215 31 31 0 chr6 78184018 78184050 -71332987 + (TAA)n Simple_repeat Simple_repeat 1 33 0 2 1181 215 377 52 0 chr6 78184085 78184162 -71332875 + B3A SINE B2 84 164 -34 2 1181 321 26 0 0 chr6 78184166 78184204 -71332833 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1181 222 164 0 0 chr6 78184206 78184261 -71332776 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 2 1181 1908 167 89 14 chr6 78184717 78185076 -71331961 + ORR1B1 LTR MaLR 1 386 -8 2 1181 285 189 143 9 chr6 78185115 78185227 -71331810 - Lx9 LINE L1 0 7644 7518 2 1181 378 0 0 0 chr6 78185228 78185270 -71331767 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1181 311 197 0 0 chr6 78185271 78185332 -71331705 - Lx9 LINE L1 -179 7465 7405 2 1181 1592 228 41 7 chr6 78185334 78185753 -71331284 - RCHARR1 DNA MER1_type -3 971 539 2 1181 243 272 64 21 chr6 78185765 78185859 -71331178 + ORR1C1 LTR MaLR 7 104 -315 2 1181 832 214 0 0 chr6 78185858 78186012 -71331025 + ORR1C1 LTR MaLR 225 378 0 2 1181 808 306 75 44 chr6 78186012 78186325 -71330712 + MTE2a LTR MaLR 57 379 0 2 1181 438 319 38 50 chr6 78186480 78186718 -71330319 + MIR SINE MIR 28 262 0 2 1181 442 248 35 35 chr6 78187646 78187759 -71329278 + B3 SINE B2 99 211 -5 2 1181 543 263 102 9 chr6 78187796 78187945 -71329092 + B3A SINE B2 6 162 -33 2 1181 414 0 0 0 chr6 78187958 78188004 -71329033 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1181 198 0 0 0 chr6 78188004 78188026 -71329011 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 1181 834 86 0 0 chr6 78188443 78188559 -71328478 + (GAAA)n Simple_repeat Simple_repeat 2 117 0 3 1181 195 139 0 0 chr6 78189825 78189861 -71327176 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1181 2094 51 0 0 chr6 78189861 78190136 -71326901 + L1_Mus1 LINE L1 5864 6138 -429 3 1181 504 259 108 104 chr6 78190809 78191068 -71325969 + Lx8 LINE L1 7184 7443 -30 3 1181 23 33 0 0 chr6 78191084 78191114 -71325923 + AT_rich Low_complexity Low_complexity 1 30 0 3 1181 207 0 0 0 chr6 78191187 78191210 -71325827 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1181 638 278 82 38 chr6 78191313 78191713 -71325324 + L1MC2 LINE L1 5907 6324 -20 3 1181 261 0 0 0 chr6 78192594 78192623 -71324414 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 3 1181 4730 49 2 3 chr6 78192661 78193250 -71323787 - L1Md_F2 LINE L1 -1 6581 5994 3 1181 481 344 58 19 chr6 78193806 78193960 -71323077 - RSINE1 SINE B4 0 165 6 3 1181 253 187 27 0 chr6 78194061 78194136 -71322901 + GA-rich Low_complexity Low_complexity 2 78 0 3 1181 498 96 0 0 chr6 78195586 78195659 -71321378 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1181 579 297 37 79 chr6 78195755 78195945 -71321092 - B3A SINE B2 -16 182 1 3 1181 697 260 20 13 chr6 78196049 78196275 -71320762 + Lx7 LINE L1 5548 5781 -1679 3 1181 585 0 0 0 chr6 78196276 78196341 -71320696 + (CAAAA)n Simple_repeat Simple_repeat 3 67 0 3 1181 596 14 14 0 chr6 78196860 78196933 -71320104 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 3 1181 438 302 76 0 chr6 78197009 78197128 -71319909 - RSINE1 SINE B4 -37 128 1 3 1181 562 318 79 18 chr6 78197383 78197748 -71319289 + MLT2B4 LTR ERVL 1 437 -119 3 1181 477 0 0 0 chr6 78197773 78197826 -71319211 + (TAG)n Simple_repeat Simple_repeat 1 53 0 3 1181 612 302 113 13 chr6 78198010 78198259 -71318778 + B4A SINE B4 1 272 -20 3 1181 484 255 84 30 chr6 78198220 78198386 -71318651 + ORR1D2 LTR MaLR 184 358 -12 3 1181 1864 95 0 15 chr6 78198541 78198807 -71318230 + ORR1A2 LTR MaLR 66 327 0 3 1181 234 136 0 0 chr6 78198956 78199000 -71318037 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 3 1181 204 125 0 0 chr6 78199604 78199636 -71317401 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 3 1181 438 87 34 55 chr6 78199897 78200043 -71316994 + A-rich Low_complexity Low_complexity 2 144 0 3 1181 558 0 0 0 chr6 78200354 78200416 -71316621 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1181 194 62 31 0 chr6 78200929 78200961 -71316076 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 1181 351 0 0 0 chr6 78201084 78201123 -71315914 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1181 258 32 0 0 chr6 78201123 78201153 -71315884 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1181 180 97 0 0 chr6 78201178 78201209 -71315828 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1181 187 97 32 0 chr6 78201653 78201684 -71315353 + L3 LINE CR1 126 157 -4332 3 1181 2675 127 51 32 chr6 78202030 78202503 -71314534 - RLTR45 LTR ERVK 0 482 1 3 1181 248 306 63 56 chr6 78202693 78202835 -71314202 + LTR82A LTR ERVL 525 667 -205 3 1181 813 262 99 42 chr6 78202900 78203163 -71313874 + B4 SINE B4 1 278 -14 3 1181 465 238 23 38 chr6 78204958 78205089 -71311948 - MTD LTR MaLR 0 419 291 3 1181 291 259 49 0 chr6 78205498 78205579 -71311458 + CT-rich Low_complexity Low_complexity 1 85 0 3 1181 181 245 0 70 chr6 78205842 78206000 -71311037 + GA-rich Low_complexity Low_complexity 4 150 0 3 1181 337 353 9 0 chr6 78206031 78206147 -71310890 + PB1D10 SINE Alu 1 117 0 3 1181 306 0 0 0 chr6 78206859 78206893 -71310144 + (TAA)n Simple_repeat Simple_repeat 1 34 0 3 1181 21 0 0 0 chr6 78206893 78206914 -71310123 + AT_rich Low_complexity Low_complexity 1 21 0 3 1181 1952 156 17 53 chr6 78207937 78208296 -71308741 - ORR1B1 LTR MaLR -2 392 47 3 1181 1025 129 0 6 chr6 78208356 78208528 -71308509 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 3 1181 417 94 5 14 chr6 78208528 78208605 -71308432 - B1_Mus2 SINE Alu -9 140 66 3 1181 281 256 29 136 chr6 78208784 78208924 -71308113 - RLTR14 LTR ERV1 -34 348 224 3 1181 441 202 33 22 chr6 78209553 78209644 -71307393 + B3A SINE B2 2 93 -105 3 1181 579 29 0 0 chr6 78209730 78209799 -71307238 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1181 307 309 33 68 chr6 78209806 78209926 -71307111 + PB1 SINE Alu 1 116 -11 3 1181 189 0 0 0 chr6 78209961 78209982 -71307055 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 1181 276 400 0 0 chr6 78210089 78210169 -71306868 + B1F1 SINE Alu 1 80 -69 3 1181 753 285 72 40 chr6 78210389 78210552 -71306485 - MTEa LTR MaLR -4 375 203 3 1181 369 0 0 0 chr6 78210552 78210593 -71306444 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1181 753 260 286 27 chr6 78210593 78210757 -71306280 - MTEa LTR MaLR -177 202 1 3 1181 205 343 20 0 chr6 78212185 78212284 -71304753 + MIR SINE MIR 162 262 0 3 1181 640 292 24 63 chr6 78212638 78212843 -71304194 + B3A SINE B2 1 197 -1 3 1181 654 218 14 27 chr6 78213041 78213187 -71303850 + B1_Mur4 SINE Alu 4 147 -3 3 1181 590 39 13 0 chr6 78213215 78213292 -71303745 + (CTAA)n Simple_repeat Simple_repeat 3 80 0 3 1181 381 86 0 0 chr6 78213303 78213361 -71303676 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1181 37349 31 2 6 chr6 78213518 78219716 -71297321 - L1Md_A LINE L1 0 6582 416 3 1181 411 286 174 19 chr6 78219991 78220255 -71296782 - Lx7 LINE L1 -361 7335 7031 3 1181 721 288 148 22 chr6 78220322 78220592 -71296445 - RMER5 LTR ERV1 -88 446 143 3 1181 270 0 0 0 chr6 78220628 78220658 -71296379 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3 1181 3582 124 7 18 chr6 78220680 78221248 -71295789 - Lx3_Mus LINE L1 -8 7001 6440 3 1181 410 281 57 14 chr6 78222941 78223082 -71293955 - B1F SINE Alu 0 149 3 3 1181 24 0 0 0 chr6 78223094 78223118 -71293919 + AT_rich Low_complexity Low_complexity 1 24 0 3 1181 663 301 39 0 chr6 78223128 78223334 -71293703 + B3 SINE B2 3 216 0 3 1181 871 350 47 7 chr6 78223430 78223706 -71293331 - B4A SINE B4 -4 288 2 3 1181 602 271 73 14 chr6 78224123 78224388 -71292649 + ORR1E LTR MaLR 1 359 0 3 1181 283 227 99 104 chr6 78224579 78224667 -71292370 - Lx8 LINE L1 -2 7471 7389 3 1181 294 29 0 0 chr6 78224667 78224702 -71292335 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1181 283 227 99 104 chr6 78224702 78224834 -71292203 - Lx8 LINE L1 -85 7388 7252 3 1181 298 343 68 63 chr6 78225513 78225703 -71291334 + MLT1A0 LTR MaLR 1 191 -174 3 1181 1324 258 53 27 chr6 78226490 78226862 -71290175 + MTE2b LTR MaLR 1 353 -6 3 1181 267 189 0 0 chr6 78227524 78227577 -71289460 + T-rich Low_complexity Low_complexity 1 53 0 3 1181 1143 68 0 0 chr6 78227578 78227724 -71289313 - B1_Mus1 SINE Alu -2 146 1 3 1181 463 320 65 84 chr6 78229082 78229450 -71287587 + MTEa LTR MaLR 19 379 0 3 1181 523 216 29 29 chr6 78229609 78229747 -71287290 - MTD LTR MaLR 0 419 282 3 1181 722 329 17 38 chr6 78229774 78230065 -71286972 - MTD LTR MaLR -127 292 8 3 1181 318 294 9 47 chr6 78230358 78230465 -71286572 + PB1D10 SINE Alu 15 117 0 3 1181 228 35 0 0 chr6 78230845 78230874 -71286163 + (TTCC)n Simple_repeat Simple_repeat 2 30 0 3 1181 1086 133 35 6 chr6 78231044 78231218 -71285819 - B2_Mm2 SINE B2 -14 181 3 3 1181 359 336 16 41 chr6 78231461 78231582 -71285455 + RSINE1 SINE B4 4 121 -44 3 1181 378 0 0 0 chr6 78231600 78231642 -71285395 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1181 630 39 0 0 chr6 78231652 78231729 -71285308 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1181 898 313 27 101 chr6 78231867 78232275 -71284762 + MTE2a LTR MaLR 1 378 -1 3 1181 256 321 131 0 chr6 78232374 78232458 -71284579 - B4 SINE B4 -95 197 103 3 1181 276 359 87 17 chr6 78232527 78232700 -71284337 + MLT1C LTR MaLR 246 430 -37 3 1181 409 340 31 61 chr6 78233435 78233477 -71283560 + B4 SINE B4 46 85 -207 3 1181 730 239 48 10 chr6 78233477 78233684 -71283353 + B3 SINE B2 1 215 -1 3 1181 660 248 41 28 chr6 78233688 78233833 -71283204 + B1_Mur1 SINE Alu 3 149 0 3 1181 346 371 55 58 chr6 78234032 78234307 -71282730 + B4A SINE B4 6 279 -13 3 1181 207 290 14 0 chr6 78235019 78235088 -71281949 - MIR SINE MIR -60 202 133 3 1181 21 57 0 0 chr6 78235814 78235849 -71281188 + AT_rich Low_complexity Low_complexity 1 35 0 3 1181 256 170 384 54 chr6 78235849 78235961 -71281076 - B2_Mm2 SINE B2 0 195 47 3 1181 1181 119 11 0 chr6 78236027 78236204 -71280833 - B2_Mm1t SINE B2 -14 179 1 3 1181 1572 341 56 18 chr6 78236441 78237337 -71279700 + Lx8 LINE L1 6387 7316 -157 3 1181 2371 85 31 73 chr6 78237343 78237724 -71279313 - RLTR10B2 LTR ERVK 0 365 1 3 1181 248 297 0 0 chr6 78237748 78237812 -71279225 + (TATG)n Simple_repeat Simple_repeat 1 64 0 3 1181 22 56 0 0 chr6 78237932 78237968 -71279069 + AT_rich Low_complexity Low_complexity 1 36 0 3 1181 1196 83 0 0 chr6 78238073 78238230 -71278807 - B2_Mm2 SINE B2 -37 158 2 3 1181 1311 222 171 0 chr6 78238652 78239003 -71278034 + MTD LTR MaLR 1 411 -8 3 1181 688 258 79 70 chr6 78239139 78239494 -71277543 + ORR1E LTR MaLR 2 359 0 3 1181 210 37 0 0 chr6 78239637 78239664 -71277373 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1181 7517 166 24 14 chr6 78239723 78241498 -71275539 - Lx2B LINE L1 -1 6999 5213 3 1181 2627 161 13 4 chr6 78241495 78242018 -71275019 - Lx2B LINE L1 -1129 4748 4221 3 1181 586 132 0 9 chr6 78242031 78242138 -71274899 - Lx2B LINE L1 -2483 3403 3298 3 1181 7373 153 21 27 chr6 78242136 78243042 -71273995 - L1VL4 LINE L1 -1130 2429 1506 4 1181 807 36 9 0 chr6 78243042 78243154 -71273883 - L1Md_T LINE L1 -1 6581 6469 4 1181 7373 157 19 25 chr6 78243154 78244223 -71272814 - L1VL4 LINE L1 -2054 1505 466 4 1181 241 259 33 11 chr6 78244927 78245017 -71272020 + Lx4B LINE L1 6959 7050 -8 4 1181 278 319 77 137 chr6 78245042 78245224 -71271813 + B4 SINE B4 4 174 -118 4 1181 245 320 10 10 chr6 78245309 78245407 -71271630 + (CA)n Simple_repeat Simple_repeat 1 98 0 4 1181 276 252 86 86 chr6 78245810 78245831 -71271206 + B1_Mur1 SINE Alu 9 91 -58 4 1181 387 272 9 37 chr6 78245831 78245938 -71271099 + ID_B1 SINE B4 111 214 -10 4 1181 276 252 86 86 chr6 78245938 78245950 -71271087 + B1_Mur1 SINE Alu 92 148 -1 4 1181 473 373 61 0 chr6 78246664 78246876 -71270161 + MTE2b LTR MaLR 3 227 -152 4 1181 662 27 89 0 chr6 78246876 78247022 -71270015 + (CAAAA)n Simple_repeat Simple_repeat 2 160 0 4 1181 469 295 8 0 chr6 78247030 78247152 -71269885 + MTE2b LTR MaLR 248 370 -9 4 1181 324 395 90 26 chr6 78247267 78247603 -71269434 - MLT1F2 LTR MaLR -153 407 28 4 1181 385 333 56 21 chr6 78247661 78247805 -71269232 + B3A SINE B2 4 152 -46 4 1181 699 257 49 11 chr6 78249308 78249493 -71267544 + ORR1C2 LTR MaLR 3 194 -190 4 1181 379 179 15 0 chr6 78249485 78249552 -71267485 + ORR1C2 LTR MaLR 311 378 0 4 1182 180 111 0 0 chr6 78250773 78250800 -71266237 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1182 185 254 121 45 chr6 78250862 78250928 -71266109 - L4 LINE RTE -1882 147 77 4 1182 1442 214 79 28 chr6 78251338 78251694 -71265343 - ORR1D1 LTR MaLR 0 374 1 4 1182 1789 126 45 14 chr6 78251713 78252003 -71265034 - Lx3A LINE L1 -3 6978 6680 4 1182 317 320 0 17 chr6 78252531 78252647 -71264390 - MLT1D LTR MaLR -14 491 392 4 1182 291 366 78 33 chr6 78252671 78252914 -71264123 - MLT1D LTR MaLR -171 334 81 4 1182 1157 159 37 5 chr6 78253726 78253941 -71263096 - URR1A DNA MER1_type -2 224 3 4 1182 642 300 76 170 chr6 78254678 78254845 -71262192 + MTC LTR MaLR 18 182 -239 4 1182 788 213 176 0 chr6 78254845 78255033 -71262004 + URR1B DNA MER1_type 5 225 0 4 1182 642 300 76 170 chr6 78255033 78255311 -71261726 + MTC LTR MaLR 183 421 0 4 1182 1611 202 57 135 chr6 78256136 78256610 -71260427 + RMER19B LTR ERVK 1 437 -465 4 1182 265 336 48 10 chr6 78256662 78256771 -71260266 + B1F SINE Alu 14 127 -22 4 1182 282 285 42 0 chr6 78256818 78256896 -71260141 + ID4 SINE ID 10 92 -60 4 1182 324 0 0 0 chr6 78257425 78257461 -71259576 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 4 1182 1949 143 55 0 chr6 78259196 78259504 -71257533 - ORR1A3 LTR MaLR 0 326 2 4 1182 395 289 79 29 chr6 78259513 78259652 -71257385 - RMER5 LTR ERV1 -346 188 43 4 1182 6140 59 33 0 chr6 78259697 78260554 -71256483 - L1Md_F2 LINE L1 -155 6427 5534 4 1182 4882 142 39 26 chr6 78261184 78261491 -71255546 + RMER17A2 LTR ERVK 1 323 -583 4 1182 639 0 0 0 chr6 78261491 78261562 -71255475 + (TCTCC)n Simple_repeat Simple_repeat 1 71 0 4 1182 4882 142 39 26 chr6 78261562 78262148 -71254889 + RMER17A2 LTR ERVK 324 906 0 4 1182 452 18 18 0 chr6 78262527 78262584 -71254453 + (TAA)n Simple_repeat Simple_repeat 2 59 0 4 1182 297 341 0 12 chr6 78262584 78262667 -71254370 + PB1D10 SINE Alu 26 107 -10 4 1182 369 0 0 0 chr6 78262926 78262967 -71254070 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1182 390 21 0 0 chr6 78262967 78263013 -71254024 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1182 316 333 102 17 chr6 78265585 78265762 -71251275 + MLT2B2 LTR ERVL 358 549 -13 4 1182 303 384 113 0 chr6 78266048 78266181 -71250856 - MTE2b LTR MaLR -119 260 113 4 1182 1492 175 90 133 chr6 78266258 78266693 -71250344 + ORR1B1-int LTR MaLR 1094 1509 0 4 1182 1479 224 40 29 chr6 78266700 78267050 -71249987 + ORR1B1 LTR MaLR 41 394 0 4 1182 621 124 0 0 chr6 78267389 78267486 -71249551 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 1182 466 242 40 45 chr6 78267501 78267643 -71249394 - RSINE1 SINE B4 -17 148 4 4 1182 21 57 0 0 chr6 78268030 78268065 -71248972 + AT_rich Low_complexity Low_complexity 1 35 0 4 1182 549 282 105 28 chr6 78268087 78268372 -71248665 + L1M4 LINE L1 4972 5278 -868 4 1182 306 0 0 0 chr6 78268372 78268406 -71248631 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1182 216 375 11 43 chr6 78268415 78268507 -71248530 + ID SINE ID 1 89 -135 4 1182 25 0 0 0 chr6 78268736 78268761 -71248276 + AT_rich Low_complexity Low_complexity 1 25 0 4 1182 24 0 0 0 chr6 78269693 78269717 -71247320 + AT_rich Low_complexity Low_complexity 1 24 0 4 1182 740 142 84 0 chr6 78269718 78269873 -71247164 - L1_Mur2 LINE L1 -1237 4640 4473 4 1182 306 0 0 0 chr6 78269876 78269910 -71247127 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1182 194 91 0 29 chr6 78270007 78270041 -71246996 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1182 320 316 80 20 chr6 78270467 78270567 -71246470 - ORR1E LTR MaLR -169 190 85 4 1182 867 28 0 0 chr6 78271291 78271397 -71245640 + (TC)n Simple_repeat Simple_repeat 1 106 0 4 1182 230 272 37 12 chr6 78271769 78271851 -71245186 + MLT1A1 LTR MaLR 305 388 -20 4 1182 442 329 235 7 chr6 78271997 78272303 -71244734 - MTD LTR MaLR -20 399 24 4 1182 1640 267 55 30 chr6 78272495 78273561 -71243476 - Lx5 LINE L1 0 7050 6049 4 1182 37 23 0 0 chr6 78274117 78274161 -71242876 + AT_rich Low_complexity Low_complexity 1 44 0 4 1182 218 357 0 0 chr6 78274345 78274429 -71242608 + (TATG)n Simple_repeat Simple_repeat 3 86 0 4 1182 775 332 0 19 chr6 78274429 78274641 -71242396 - B4 SINE B4 0 292 85 4 1182 3206 155 19 5 chr6 78274948 78275794 -71241243 - Lx2B LINE L1 -884 6116 5255 4 1182 3717 206 57 5 chr6 78275794 78276637 -71240400 + Lx2B LINE L1 6109 6995 -5 4 1182 284 306 131 16 chr6 78276675 78276858 -71240179 + L1M5 LINE L1 5619 5822 -342 4 1182 583 170 8 21 chr6 78278244 78278486 -71238551 + GA-rich Low_complexity Low_complexity 1 238 0 4 1182 521 351 16 41 chr6 78278639 78278715 -71238322 - MLT1A0 LTR MaLR -3 362 296 4 1182 438 20 0 0 chr6 78278715 78278766 -71238271 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1182 521 351 16 41 chr6 78278766 78279057 -71237980 - MLT1A0 LTR MaLR -70 295 4 4 1182 243 350 8 8 chr6 78279064 78279182 -71237855 + GA-rich Low_complexity Low_complexity 3 120 0 4 1182 261 0 0 0 chr6 78279851 78279880 -71237157 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1182 513 0 0 0 chr6 78279880 78279936 -71237101 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1182 523 325 78 58 chr6 78280004 78280210 -71236827 - B4A SINE B4 -82 210 1 4 1182 290 356 87 56 chr6 78281282 78281603 -71235434 + LTR79 LTR ERVL 176 506 -21 4 1182 260 212 0 24 chr6 78281648 78281730 -71235307 + (TATG)n Simple_repeat Simple_repeat 4 83 0 4 1182 24 32 0 0 chr6 78282772 78282803 -71234234 + AT_rich Low_complexity Low_complexity 1 31 0 4 1182 367 212 0 0 chr6 78282823 78282889 -71234148 - Lx8 LINE L1 -143 7330 7265 4 1182 247 291 28 37 chr6 78282885 78282992 -71234045 + Lx8 LINE L1 7359 7464 -9 4 1182 1280 82 27 5 chr6 78282993 78283177 -71233860 + B2_Mm2 SINE B2 1 188 -7 4 1182 207 162 0 0 chr6 78284358 78284395 -71232642 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1182 294 297 77 35 chr6 78284451 78284594 -71232443 + L1MB8 LINE L1 5884 6032 -146 4 1182 745 279 89 154 chr6 78285701 78286116 -71230921 + MTD LTR MaLR 18 405 -14 4 1182 273 310 0 0 chr6 78286378 78286436 -71230601 + RSINE1 SINE B4 5 62 -103 4 1182 720 272 7 7 chr6 78286433 78286581 -71230456 + RSINE1 SINE B4 17 164 -1 4 1182 581 0 14 0 chr6 78286582 78286651 -71230386 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1182 27 0 0 0 chr6 78286743 78286770 -71230267 + AT_rich Low_complexity Low_complexity 1 27 0 4 1182 3799 83 2 28 chr6 78286986 78287530 -71229507 - Lx3_Mus LINE L1 -882 6127 5598 4 1182 6237 89 15 1 chr6 78287530 78288387 -71228650 + Lx3_Mus LINE L1 6141 7009 0 4 1182 220 324 83 14 chr6 78288427 78288499 -71228538 - RSINE1 SINE B4 -17 148 72 4 1182 359 286 10 10 chr6 78288674 78288773 -71228264 + MIR3 SINE MIR 109 207 -1 4 1182 476 233 79 92 chr6 78289828 78290028 -71227009 - ORR1B1 LTR MaLR -2 382 209 4 1182 532 282 139 12 chr6 78290662 78290834 -71226203 + B3 SINE B2 18 211 -5 4 1182 255 296 27 64 chr6 78291333 78291479 -71225558 - MLT1E3 LTR MaLR -449 178 64 4 1182 270 258 31 10 chr6 78292188 78292286 -71224751 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 4 1182 1012 153 6 23 chr6 78292401 78292541 -71224496 + B2_Mm2 SINE B2 6 145 -50 4 1182 432 0 0 0 chr6 78292541 78292589 -71224448 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1182 1012 153 6 23 chr6 78292589 78292622 -71224415 + B2_Mm2 SINE B2 146 175 -20 4 1182 6569 183 16 1 chr6 78292622 78293878 -71223159 - L1_Mur1 LINE L1 -298 5588 4314 4 1182 1998 122 22 0 chr6 78293886 78294197 -71222840 + Lx2 LINE L1 5596 5913 -1084 4 1182 5201 171 4 17 chr6 78294199 78295103 -71221934 + Lx2 LINE L1 6105 6997 0 4 1182 201 143 0 0 chr6 78295428 78295463 -71221574 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1182 3829 28 24 2 chr6 78295731 78296191 -71220846 - L1_Mus1 LINE L1 0 6567 6098 4 1182 344 22 0 22 chr6 78296258 78296304 -71220733 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1182 229 348 92 16 chr6 78296718 78296902 -71220135 + MER46C DNA MER2_type 114 311 -27 4 1182 282 321 59 65 chr6 78296970 78297260 -71219777 - L1M5 LINE L1 -381 5743 5456 4 1182 1816 274 93 6 chr6 78298826 78299495 -71217542 + Lx7 LINE L1 573 1299 -6429 4 1182 9828 206 68 19 chr6 78299472 78300621 -71216416 + Lx7 LINE L1 3119 4334 -1546 4 1182 1107 76 21 0 chr6 78300621 78300765 -71216272 - B1_Mm SINE Alu 0 147 1 4 1182 9828 206 68 19 chr6 78300765 78300830 -71216207 + Lx7 LINE L1 4335 4412 -1468 4 1182 315 0 0 0 chr6 78300830 78300865 -71216172 + (TAA)n Simple_repeat Simple_repeat 1 35 0 4 1182 9828 206 68 19 chr6 78300865 78301170 -71215867 + Lx7 LINE L1 4413 4745 -1135 4 1182 248 0 0 30 chr6 78301170 78301203 -71215834 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 4 1182 9828 223 69 20 chr6 78301203 78302750 -71214287 + Lx7 LINE L1 4746 6354 -1342 4 1182 1916 28 177 0 chr6 78302750 78302998 -71214039 + RLTR10B LTR ERVK 1 292 0 4 1182 2273 265 70 21 chr6 78302998 78303020 -71214017 + Lx7 LINE L1 6355 6376 -1320 4 1182 35819 55 10 4 chr6 78303030 78308520 -71208517 + L1Md_T LINE L1 104 5586 -297 4 1182 8473 33 0 0 chr6 78308520 78309516 -71207521 + L1Md_T LINE L1 5587 6582 0 4 1182 228 111 0 0 chr6 78309613 78309649 -71207388 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1182 5189 234 35 30 chr6 78309654 78310960 -71206077 + Lx7 LINE L1 6384 7696 0 4 1182 247 361 102 0 chr6 78311069 78311177 -71205860 + PB1 SINE Alu 1 119 -8 5 1182 21 0 0 0 chr6 78311305 78311326 -71205711 + AT_rich Low_complexity Low_complexity 1 21 0 5 1182 889 69 0 51 chr6 78311371 78311509 -71205528 - L1_Mus1 LINE L1 0 6567 6437 5 1182 2185 107 0 0 chr6 78311509 78311819 -71205218 + L1_Mm LINE L1 4761 5070 -813 5 1182 234 0 0 0 chr6 78313502 78313528 -71203509 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1182 222 37 0 0 chr6 78313667 78313694 -71203343 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1182 485 295 12 80 chr6 78314183 78314345 -71202692 - B4 SINE B4 -115 177 27 5 1182 1109 90 0 0 chr6 78314398 78314543 -71202494 - B1_Mus2 SINE Alu -2 145 1 5 1182 31 44 0 0 chr6 78314622 78314667 -71202370 + AT_rich Low_complexity Low_complexity 1 45 0 5 1182 450 0 0 0 chr6 78314719 78314769 -71202268 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1182 297 0 0 0 chr6 78314769 78314801 -71202236 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1182 439 348 14 0 chr6 78314806 78314947 -71202090 - B3A SINE B2 -53 145 3 5 1182 1440 143 12 19 chr6 78315156 78315413 -71201624 - Lx2 LINE L1 -950 6047 5793 5 1182 4833 175 38 1 chr6 78315413 78316316 -71200721 + Lx2B LINE L1 6060 6995 -5 5 1182 497 183 31 62 chr6 78316316 78316332 -71200705 - Lx7 LINE L1 -1904 5792 5780 5 1182 180 77 0 0 chr6 78316511 78316537 -71200500 + (CAAAC)n Simple_repeat Simple_repeat 3 28 0 5 1182 1040 76 62 0 chr6 78318298 78318442 -71198595 - L1_Mus3 LINE L1 -283 6355 6203 5 1182 23 0 0 0 chr6 78318732 78318755 -71198282 + AT_rich Low_complexity Low_complexity 1 23 0 5 1182 4385 174 29 26 chr6 78319033 78320014 -71197023 - Lx5 LINE L1 -616 6434 5435 5 1182 2330 78 0 17 chr6 78320008 78320360 -71196677 + L1_Mm LINE L1 1807 2152 -3731 5 1182 259 390 0 0 chr6 78323500 78323582 -71193455 - RSINE1 SINE B4 -2 163 82 5 1182 282 207 0 49 chr6 78324082 78324143 -71192894 + L1M2 LINE L1 12 69 -6780 5 1182 704 336 89 38 chr6 78324300 78324693 -71192344 + MTE2a LTR MaLR 6 418 -1 5 1182 192 40 0 0 chr6 78324904 78324929 -71192108 + (CAGAT)n Simple_repeat Simple_repeat 3 27 0 5 1182 576 362 8 32 chr6 78327757 78328013 -71189024 - B4A SINE B4 -40 252 4 5 1182 22 35 0 0 chr6 78329139 78329168 -71187869 + AT_rich Low_complexity Low_complexity 1 29 0 5 1182 789 11 0 0 chr6 78329500 78329590 -71187447 + (GA)n Simple_repeat Simple_repeat 2 91 0 5 1182 254 303 83 90 chr6 78329858 78330003 -71187034 - B3A SINE B2 -13 203 60 5 1182 472 285 15 8 chr6 78331580 78331711 -71185326 + B1_Mur4 SINE Alu 19 150 0 5 1182 782 269 76 0 chr6 78332681 78332878 -71184159 - B3 SINE B2 -2 214 3 5 1182 483 18 0 0 chr6 78333089 78333145 -71183892 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1182 369 278 75 66 chr6 78335008 78335235 -71181802 + L1MA8 LINE L1 4968 5196 -947 5 1182 251 273 100 7 chr6 78335242 78335382 -71181655 + Lx9 LINE L1 7492 7644 0 5 1182 819 279 55 28 chr6 78335412 78335948 -71181089 + L1MA8 LINE L1 5180 5734 -569 5 1182 434 295 18 82 chr6 78335971 78336141 -71180896 - B3A SINE B2 -1 197 39 5 1182 302 224 98 60 chr6 78336166 78336299 -71180738 + L1MA8 LINE L1 5776 5913 -378 5 1182 904 205 48 52 chr6 78336451 78336491 -71180546 + BGLII_B LTR ERVK 1 44 -397 5 1182 1192 51 6 0 chr6 78336491 78336647 -71180390 - L1Md_T LINE L1 -1 6581 6425 5 1182 904 205 48 52 chr6 78336647 78336773 -71180264 + BGLII_B LTR ERVK 45 167 -274 5 1182 2941 91 10 0 chr6 78336773 78337169 -71179868 + MTB LTR MaLR 1 400 0 5 1182 904 275 80 83 chr6 78337169 78337428 -71179609 + BGLII_B LTR ERVK 148 426 -266 5 1182 225 367 43 32 chr6 78337828 78337921 -71179116 + ID_B1 SINE B4 110 203 -21 5 1182 282 56 0 0 chr6 78337923 78337959 -71179078 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1182 870 301 51 51 chr6 78337975 78338251 -71178786 + B4A SINE B4 3 278 -14 5 1182 225 0 0 0 chr6 78338318 78338343 -71178694 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1182 441 0 0 0 chr6 78338343 78338391 -71178646 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1182 279 305 17 110 chr6 78338570 78338688 -71178349 + PB1D10 SINE Alu 2 108 -9 5 1182 1213 68 0 0 chr6 78339137 78339285 -71177752 + B1_Mus1 SINE Alu 1 148 0 5 1182 180 143 0 0 chr6 78339289 78339331 -71177706 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 5 1182 44 35 0 0 chr6 78339437 78339495 -71177542 + AT_rich Low_complexity Low_complexity 1 58 0 5 1182 2273 94 0 19 chr6 78339538 78339862 -71177175 - L1_Mus2 LINE L1 0 6566 6249 5 1182 522 314 12 31 chr6 78339889 78340050 -71176987 + B3A SINE B2 3 160 -38 5 1182 347 244 58 80 chr6 78340164 78340302 -71176735 + B1F SINE Alu 5 139 -10 5 1182 265 322 11 0 chr6 78340985 78341072 -71175965 - Lx8 LINE L1 -442 7031 6944 5 1182 201 197 28 14 chr6 78341122 78341194 -71175843 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1182 1007 155 12 24 chr6 78341961 78342126 -71174911 + URR1B DNA MER1_type 1 163 -62 5 1182 228 302 129 98 chr6 78342256 78342388 -71174649 + LTR40b LTR ERVL 123 258 -204 5 1182 2453 232 34 42 chr6 78342913 78343526 -71173511 - Lx5 LINE L1 -3 7047 6440 5 1182 3468 41 0 0 chr6 78343618 78344034 -71173003 + L1Md_T LINE L1 6165 6580 -2 5 1182 540 56 0 0 chr6 78344641 78344713 -71172324 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1182 308 269 15 0 chr6 78344714 78344781 -71172256 - B3A SINE B2 -18 180 113 5 1182 270 333 57 72 chr6 78345133 78345327 -71171710 + MLT1E LTR MaLR 75 265 -388 5 1182 33746 35 1 0 chr6 78345372 78351465 -71165572 + L1Md_T LINE L1 1 5589 -297 5 1182 8743 11 12 0 chr6 78351465 78352449 -71164588 + L1Md_T LINE L1 5590 6585 0 5 1182 357 341 52 87 chr6 78352464 78352750 -71164287 + MLT1A0 LTR MaLR 74 349 -16 5 1182 565 304 96 67 chr6 78353004 78353244 -71163793 - MTE2a LTR MaLR -132 247 1 5 1182 186 43 0 0 chr6 78353678 78353701 -71163336 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1182 869 284 0 20 chr6 78353907 78354108 -71162929 - B3A SINE B2 0 198 2 5 1182 318 26 0 0 chr6 78354616 78354655 -71162382 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1182 862 113 0 78 chr6 78357105 78357259 -71159778 + L1_Mus2 LINE L1 6415 6556 -10 5 1182 21 36 0 0 chr6 78357290 78357318 -71159719 + AT_rich Low_complexity Low_complexity 1 28 0 5 1182 28 0 0 0 chr6 78357395 78357423 -71159614 + AT_rich Low_complexity Low_complexity 1 28 0 5 1182 1908 257 15 43 chr6 78359040 78359569 -71157468 - Lx5 LINE L1 0 7050 6537 5 1182 1107 215 16 0 chr6 78359575 78359821 -71157216 + Lx5 LINE L1 6284 6533 -517 5 1182 215 167 21 0 chr6 78360213 78360261 -71156776 + A-rich Low_complexity Low_complexity 5 53 0 5 1182 284 64 0 21 chr6 78360269 78360317 -71156720 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1182 2330 41 7 10 chr6 78360615 78360909 -71156128 + L1Md_F3 LINE L1 6278 6570 -14 5 1182 875 125 7 0 chr6 78360932 78361068 -71155969 + B1_Mm SINE Alu 1 137 -10 5 1182 2884 153 7 11 chr6 78361077 78361618 -71155419 + L1VL4 LINE L1 434 972 -5330 5 1182 18903 163 9 2 chr6 78361607 78365252 -71151785 + L1_Mm LINE L1 1814 5483 -400 5 1182 5466 244 51 17 chr6 78365486 78368119 -71148918 + Lx6 LINE L1 4557 7305 -155 5 1182 941 173 81 19 chr6 78368120 78368339 -71148698 + MTC LTR MaLR 122 367 -54 5 1182 299 65 22 0 chr6 78369411 78369457 -71147580 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1182 1636 160 10 20 chr6 78369713 78370013 -71147024 - Lx LINE L1 -7 6647 6351 5 1182 2193 58 101 25 chr6 78370013 78370293 -71146744 + ORR1A1 LTR MaLR 6 314 -32 5 1182 3949 65 12 4 chr6 78370293 78370801 -71146236 + RLTR1B LTR ERV1 1 512 0 5 1182 2193 58 101 25 chr6 78370801 78370837 -71146200 + ORR1A1 LTR MaLR 315 346 0 5 1182 12421 68 53 3 chr6 78370837 78372544 -71144493 + ORR1A1-int LTR MaLR 1 1792 0 5 1182 2511 58 64 9 chr6 78372544 78372872 -71144165 + ORR1A1 LTR MaLR 1 346 0 5 1182 2657 146 75 48 chr6 78372872 78373418 -71143619 - Lx2 LINE L1 -289 6708 6148 5 1182 534 275 23 16 chr6 78373568 78373888 -71143149 + L1_Mur2 LINE L1 5129 5484 -696 5 1182 513 47 0 0 chr6 78375007 78375071 -71141966 + (TTCTC)n Simple_repeat Simple_repeat 2 65 0 5 1182 212 200 0 30 chr6 78377942 78378009 -71139028 + T-rich Low_complexity Low_complexity 2 66 0 5 1182 403 309 51 7 chr6 78379452 78379589 -71137448 + B1F SINE Alu 6 148 -1 5 1182 563 290 57 23 chr6 78379637 78379845 -71137192 - B3A SINE B2 -2 214 2 5 1182 950 216 13 22 chr6 78380072 78380299 -71136738 + URR1A DNA MER1_type 2 226 0 5 147 5028 127 9 1 chr6 78380401 78381407 -71135630 - Lx LINE L1 -278 6376 5363 5 1183 1218 166 8 35 chr6 78381419 78381675 -71135362 + Lx LINE L1 6393 6641 -13 5 1183 1019 119 13 0 chr6 78381683 78381910 -71135127 + (GAAA)n Simple_repeat Simple_repeat 1 229 0 5 1183 401 354 33 20 chr6 78382277 78382522 -71134515 + Lx9 LINE L1 7125 7372 -272 5 1183 4221 196 32 19 chr6 78382712 78383674 -71133363 - Lx5 LINE L1 -39 7011 5922 5 1183 2430 184 59 4 chr6 78383671 78384194 -71132843 - Lx5 LINE L1 -185 5692 5141 5 1183 4086 178 22 21 chr6 78384191 78385101 -71131936 - Lx5 LINE L1 -1158 4719 3809 5 1183 4699 68 3 8 chr6 78385101 78385724 -71131313 - L1Md_F2 LINE L1 0 6582 5963 5 1183 5881 41 0 0 chr6 78385725 78386428 -71130609 - L1Md_T LINE L1 0 6582 5880 5 1183 20813 69 1 5 chr6 78386428 78390598 -71126439 - L1Md_F2 LINE L1 -1128 4755 641 5 1183 487 229 0 0 chr6 78390595 78390704 -71126333 - Lx5 LINE L1 -2062 3815 3707 5 1183 5397 33 14 2 chr6 78390710 78391353 -71125684 - L1Md_F3 LINE L1 -15 6569 5919 5 1183 573 51 13 0 chr6 78391353 78391432 -71125605 + L1Md_F3 LINE L1 5880 5959 -625 5 1183 273 213 0 0 chr6 78391430 78391491 -71125546 - Lx5 LINE L1 -2163 3714 3654 5 1183 3839 186 60 13 chr6 78391490 78391935 -71125102 - Lx5 LINE L1 -3383 2494 2058 5 1183 303 28 0 0 chr6 78391935 78391971 -71125066 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1183 3839 186 60 13 chr6 78391971 78392446 -71124591 - Lx5 LINE L1 -3820 2057 1531 5 1183 5705 102 38 11 chr6 78392457 78393000 -71124037 + L1VL2 LINE L1 73 624 -5711 5 1183 330 145 14 42 chr6 78393000 78393072 -71123965 + L1Md_F2 LINE L1 6501 6570 -12 5 1183 5705 98 23 7 chr6 78393072 78394255 -71122782 + L1VL2 LINE L1 625 1836 -1779 5 1183 277 315 0 0 chr6 78394392 78394481 -71122556 - PB1D10 SINE Alu -2 115 27 5 1183 187 0 0 108 chr6 78394816 78394853 -71122184 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 5 1183 1138 83 0 0 chr6 78394869 78395013 -71122024 - B1_Mus1 SINE Alu -2 146 3 5 1183 6443 50 1 1 chr6 78395025 78395820 -71121217 + L1Md_F2 LINE L1 5778 6572 -10 6 1183 1176 210 48 34 chr6 78396528 78397081 -71119956 - Lx5 LINE L1 -4332 1545 980 5 1183 2871 131 50 6 chr6 78397265 78397750 -71119287 + RLTR22_Mur LTR ERVK 306 811 -1037 6 1183 1793 128 151 9 chr6 78397831 78398181 -71118856 - Lx3B LINE L1 -5 7004 6583 6 1183 742 171 8 0 chr6 78398619 78398748 -71118289 + RLTR22_Mur LTR ERVK 1592 1721 -127 6 1183 6896 76 6 32 chr6 78398749 78400094 -71116943 + L1_Mus1 LINE L1 5244 6566 -1 6 1183 854 144 0 7 chr6 78400101 78400241 -71116796 + RLTR22_Mur LTR ERVK 1710 1848 0 6 1183 207 0 0 0 chr6 78401763 78401786 -71115251 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1183 324 301 6 104 chr6 78402076 78402239 -71114798 + L1M4 LINE L1 4617 4763 -1383 6 1183 396 132 0 0 chr6 78402515 78402591 -71114446 + Lx LINE L1 6502 6577 -77 6 1183 468 0 0 0 chr6 78402603 78402655 -71114382 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1183 615 287 71 16 chr6 78402656 78402840 -71114197 + B3 SINE B2 13 206 -10 6 1183 22 35 0 0 chr6 78403137 78403166 -71113871 + AT_rich Low_complexity Low_complexity 1 29 0 6 1183 314 279 21 50 chr6 78403244 78403483 -71113554 + L1M4 LINE L1 5437 5664 -510 6 1183 703 175 6 18 chr6 78404352 78404515 -71112522 - Lx7 LINE L1 0 7696 7536 6 1183 5668 158 12 4 chr6 78404526 78405520 -71111517 - Lx4B LINE L1 -470 6588 5587 6 1183 970 211 76 17 chr6 78405535 78405771 -71111266 + Lx4A LINE L1 6809 7058 0 6 1183 228 226 23 45 chr6 78405775 78405898 -71111139 + (CAAA)n Simple_repeat Simple_repeat 1 120 0 6 1183 663 75 0 0 chr6 78405910 78406004 -71111033 + (CA)n Simple_repeat Simple_repeat 1 94 0 6 1183 4700 4 0 5 chr6 78406129 78406686 -71110351 + L1Md_A LINE L1 5033 5586 -297 6 1183 9093 1 0 0 chr6 78406686 78407682 -71109355 + L1Md_A LINE L1 5587 6582 0 6 1183 303 351 70 9 chr6 78408555 78408768 -71108269 - ORR1E LTR MaLR -15 344 119 6 1183 4711 19 0 0 chr6 78409160 78409696 -71107341 + L1Md_A LINE L1 6047 6582 0 6 1183 458 293 27 54 chr6 78411044 78411192 -71105845 - B1F SINE Alu 0 149 6 6 1183 235 227 0 0 chr6 78411353 78411397 -71105640 + CT-rich Low_complexity Low_complexity 2 45 0 6 1183 742 293 38 19 chr6 78411399 78411611 -71105426 - B3 SINE B2 0 216 1 6 1183 432 0 0 0 chr6 78411795 78411843 -71105194 + (CAA)n Simple_repeat Simple_repeat 3 50 0 6 1183 180 0 0 0 chr6 78411843 78411863 -71105174 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1183 216 97 0 0 chr6 78411867 78411898 -71105139 + (CCA)n Simple_repeat Simple_repeat 2 32 0 6 1183 360 0 0 0 chr6 78412396 78412436 -71104601 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1183 450 0 0 0 chr6 78412436 78412485 -71104552 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1183 250 220 82 50 chr6 78413916 78414098 -71102939 - L1MC LINE L1 -2889 3257 3070 6 1183 731 231 0 0 chr6 78414119 78414253 -71102784 + URR1B DNA MER1_type 1 134 -91 6 1183 251 287 154 9 chr6 78414275 78414606 -71102431 - L1MC LINE L1 -3095 3051 2673 6 1183 279 340 27 54 chr6 78414621 78414635 -71102402 - ID_B1 SINE B4 -1 223 165 6 1183 424 345 8 8 chr6 78414635 78414755 -71102282 - B1F SINE Alu -18 131 12 6 1183 279 340 27 54 chr6 78414755 78414771 -71102266 - ID_B1 SINE B4 -1 164 85 6 1183 248 278 11 22 chr6 78414796 78414888 -71102149 - L1MC LINE L1 -3513 2633 2543 6 1183 409 316 125 12 chr6 78415211 78415467 -71101570 - L1MC LINE L1 -3617 2529 2245 6 1183 2015 136 21 15 chr6 78415480 78415816 -71101221 + Lx3B LINE L1 6633 6970 -3 6 1183 180 0 0 0 chr6 78415851 78415871 -71101166 + (TCC)n Simple_repeat Simple_repeat 3 22 0 6 1183 214 277 15 0 chr6 78416619 78416684 -71100353 + GA-rich Low_complexity Low_complexity 4 69 0 6 1183 254 50 0 24 chr6 78416684 78416725 -71100312 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1183 305 367 94 36 chr6 78419588 78419896 -71097141 + Charlie1a DNA MER1_type 7 332 -1123 6 1183 216 67 0 0 chr6 78420044 78420074 -71096963 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6 1183 1106 237 38 3 chr6 78420075 78420508 -71096529 - Lx4B LINE L1 -21 7037 6497 6 1183 348 323 84 38 chr6 78420788 78421132 -71095905 + L1MC5 LINE L1 7554 7913 -48 6 1183 297 0 0 0 chr6 78421553 78421586 -71095451 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 6 1183 1563 281 37 33 chr6 78421795 78422307 -71094730 - Lx6 LINE L1 -2 7458 6945 6 1183 282 343 10 10 chr6 78422798 78422898 -71094139 - MLT1H2 LTR MaLR -14 475 376 6 1183 3415 18 8 0 chr6 78422900 78423293 -71093744 - MTA_Mm LTR MaLR 0 396 1 6 1183 9531 15 6 0 chr6 78423293 78424384 -71092653 - MTA_Mm-int LTR MaLR 0 1098 1 6 1183 3415 18 8 0 chr6 78424384 78424777 -71092260 - MTA_Mm LTR MaLR 0 396 1 6 1183 804 276 83 18 chr6 78424785 78425003 -71092034 + B4 SINE B4 59 290 -2 6 1183 22 56 0 0 chr6 78425172 78425208 -71091829 + AT_rich Low_complexity Low_complexity 1 36 0 6 1183 228 222 0 147 chr6 78425626 78425721 -71091316 - RMER12 LTR ERVK -597 725 645 6 1183 366 293 10 0 chr6 78425885 78425984 -71091053 + GA-rich Low_complexity Low_complexity 3 102 0 6 1183 1193 68 0 0 chr6 78426867 78427013 -71090024 - B1_Mus1 SINE Alu -1 147 2 6 1183 25 0 0 0 chr6 78427251 78427276 -71089761 + AT_rich Low_complexity Low_complexity 1 25 0 6 1183 216 265 0 0 chr6 78427358 78427407 -71089630 - MIRb SINE MIR -3 265 217 6 1183 3497 46 25 5 chr6 78427898 78428335 -71088702 + L1Md_F2 LINE L1 6137 6582 0 6 1183 286 250 225 39 chr6 78429778 78429907 -71087130 - B3A SINE B2 -1 197 45 6 1183 29 47 0 0 chr6 78429942 78429985 -71087052 + AT_rich Low_complexity Low_complexity 1 43 0 6 1183 228 86 0 0 chr6 78430548 78430583 -71086454 + (CATA)n Simple_repeat Simple_repeat 2 36 0 6 1183 180 0 0 0 chr6 78430653 78430673 -71086364 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1183 254 243 14 0 chr6 78430700 78430796 -71086241 + (CA)n Simple_repeat Simple_repeat 1 97 0 6 1183 471 100 0 0 chr6 78430797 78430867 -71086170 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 6 1183 212 270 0 13 chr6 78430899 78430962 -71086075 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1183 384 32 32 16 chr6 78430962 78431025 -71086012 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 6 1183 212 270 0 13 chr6 78431025 78431036 -71086001 + (TA)n Simple_repeat Simple_repeat 1 11 0 6 1183 195 100 0 0 chr6 78431098 78431128 -71085909 + (TA)n Simple_repeat Simple_repeat 1 30 0 6 1183 253 43 21 42 chr6 78431669 78431717 -71085320 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 1183 1101 87 0 0 chr6 78431717 78431855 -71085182 - B1_Mus2 SINE Alu -8 139 2 6 1183 434 295 0 9 chr6 78432572 78432678 -71084359 + B1F1 SINE Alu 13 117 -32 6 1183 422 356 33 13 chr6 78433967 78434118 -71082919 + RSINE1 SINE B4 12 165 0 6 1183 477 76 0 0 chr6 78434121 78434187 -71082850 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1183 551 324 54 7 chr6 78434284 78434433 -71082604 + RSINE1 SINE B4 6 161 -4 6 1183 994 188 15 30 chr6 78434478 78434675 -71082362 + B2_Mm2 SINE B2 1 194 -1 6 1183 36490 14 2 7 chr6 78434706 78440688 -71076349 + L1Md_A LINE L1 1 5586 -297 6 1183 8953 9 0 0 chr6 78440688 78441684 -71075353 + L1Md_A LINE L1 5587 6582 0 6 1183 1405 70 11 0 chr6 78441730 78441916 -71075121 + B2_Mm1t SINE B2 2 189 -4 6 1183 195 272 85 12 chr6 78442618 78442700 -71074337 - MIRc SINE MIR -158 110 23 6 1183 188 344 68 8 chr6 78445081 78445213 -71071824 + L2a LINE L2 2476 2615 -804 6 1183 360 64 0 0 chr6 78445373 78445420 -71071617 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1183 258 365 90 28 chr6 78445677 78445967 -71071070 + L2a LINE L2 2930 3237 -189 6 1183 404 288 46 39 chr6 78447589 78447719 -71069318 + ID_B1 SINE B4 94 224 0 6 1183 1021 58 66 0 chr6 78448053 78448190 -71068847 + B1_Mm SINE Alu 2 147 0 6 1183 4664 53 9 2 chr6 78448390 78448973 -71068064 - LTRIS_Mus LTR ERV1 0 587 1 6 1183 192 111 16 129 chr6 78449378 78449440 -71067597 + L2c LINE L2 3040 3094 -293 6 1183 1706 190 96 52 chr6 78449911 78450295 -71066742 - MTC LTR MaLR -20 401 1 6 1183 1995 134 0 89 chr6 78450348 78450709 -71066328 + ORR1A4 LTR MaLR 1 329 0 6 1183 3753 178 32 40 chr6 78450709 78450754 -71066283 + ORR1A4-int LTR MaLR 1 46 -1917 6 1183 252 0 0 0 chr6 78450754 78450782 -71066255 + (CCTTG)n Simple_repeat Simple_repeat 5 32 0 6 1183 1022 87 6 0 chr6 78450782 78450954 -71066083 + (TTCTCC)n Simple_repeat Simple_repeat 5 178 0 6 1183 414 0 0 0 chr6 78450957 78451003 -71066034 + (TTTCC)n Simple_repeat Simple_repeat 5 50 0 6 1183 986 91 6 0 chr6 78451013 78451178 -71065859 + (TTCTCC)n Simple_repeat Simple_repeat 5 170 0 6 1183 342 0 0 0 chr6 78451181 78451219 -71065818 + (TTTCC)n Simple_repeat Simple_repeat 3 40 0 6 1183 3753 178 32 40 chr6 78451219 78451902 -71065135 + ORR1A4-int LTR MaLR 47 739 -1224 6 1183 623 237 94 78 chr6 78451829 78452021 -71065016 + MT2B LTR ERVL 93 287 -314 6 1183 4636 166 17 4 chr6 78451983 78452804 -71064233 + ORR1A4-int LTR MaLR 719 1550 -413 6 1183 325 203 0 60 chr6 78452802 78452886 -71064151 + ORR1A4-int LTR MaLR 1836 1914 -49 6 1183 1843 144 8 71 chr6 78452897 78453248 -71063789 + ORR1A4 LTR MaLR 1 329 0 6 1183 188 0 74 0 chr6 78453514 78453541 -71063496 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1183 27 73 0 0 chr6 78453835 78453890 -71063147 + AT_rich Low_complexity Low_complexity 1 55 0 6 1183 501 88 0 0 chr6 78454160 78454240 -71062797 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1183 555 312 15 50 chr6 78455007 78455157 -71061880 + B3A SINE B2 2 151 -47 6 1183 1649 224 33 18 chr6 78455157 78455556 -71061481 - MTB_Mm LTR MaLR 0 407 3 6 1183 555 312 15 50 chr6 78455556 78455607 -71061430 + B3A SINE B2 152 196 -2 6 1183 273 256 30 30 chr6 78455726 78455859 -71061178 + L1MA6 LINE L1 6136 6268 -32 6 1183 264 286 0 38 chr6 78456788 78456868 -71060169 - MT2A LTR ERVL -64 469 393 6 1183 2136 234 69 0 chr6 78456869 78457390 -71059647 - Lx7 LINE L1 -593 7103 6547 6 1183 323 167 15 0 chr6 78457889 78457955 -71059082 - Lx3C LINE L1 -2 6974 6908 6 1183 342 0 0 0 chr6 78457965 78458003 -71059034 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1183 2423 167 44 0 chr6 78458263 78458717 -71058320 - Lx3C LINE L1 -165 6811 6338 6 1183 1479 269 33 66 chr6 78459322 78459864 -71057173 - Lx6 LINE L1 -918 6542 6019 6 1183 433 263 137 23 chr6 78459959 78460134 -71056903 + B3A SINE B2 4 198 0 6 1183 354 23 0 0 chr6 78460725 78460768 -71056269 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1183 311 237 17 0 chr6 78460798 78460857 -71056180 - B3A SINE B2 -89 109 50 6 1183 335 302 18 36 chr6 78460860 78460970 -71056067 + MTD LTR MaLR 90 197 -222 6 1183 585 341 38 68 chr6 78460984 78461277 -71055760 - MTEb LTR MaLR -93 286 3 6 1183 657 342 73 33 chr6 78461848 78462120 -71054917 - B4A SINE B4 -2 290 8 6 1183 1165 154 48 9 chr6 78463255 78463465 -71053572 + URR1B DNA MER1_type 1 218 -7 6 1183 267 103 0 0 chr6 78463601 78463640 -71053397 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 7 1183 428 283 40 0 chr6 78463649 78463748 -71053289 - PB1D10 SINE Alu -5 112 10 7 1183 2222 185 19 14 chr6 78463803 78464219 -71052818 + MTC LTR MaLR 4 421 0 7 1183 1568 225 44 3 chr6 78464527 78464892 -71052145 - RLTR14 LTR ERV1 0 382 3 7 1183 579 66 0 0 chr6 78466753 78466829 -71050208 + (TTTTC)n Simple_repeat Simple_repeat 5 80 0 7 1183 1234 63 17 6 chr6 78466831 78467007 -71050030 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 7 1183 812 139 14 7 chr6 78467329 78467520 -71049517 - L1_Mm LINE L1 -1160 4717 4521 7 1183 645 95 0 0 chr6 78467519 78467603 -71049434 + L1_Mm LINE L1 5553 5636 -247 7 1183 3864 80 30 42 chr6 78467605 78468180 -71048857 + L1_Mus2 LINE L1 5999 6566 0 7 1183 513 131 0 0 chr6 78468190 78468274 -71048763 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 7 1183 238 261 0 30 chr6 78468274 78468341 -71048696 - RSINE1 SINE B4 -96 69 5 7 1183 832 138 118 0 chr6 78468815 78468967 -71048070 + L1_Mm LINE L1 4777 4946 -937 7 1183 26 0 0 0 chr6 78468995 78469021 -71048016 + AT_rich Low_complexity Low_complexity 1 26 0 7 1183 37908 31 2 6 chr6 78469021 78475399 -71041638 - L1Md_T LINE L1 -3 6579 233 7 1183 358 98 0 0 chr6 78475407 78475468 -71041569 - L1_Mus1 LINE L1 0 6567 6507 7 1183 3988 84 9 3 chr6 78475468 78476045 -71040992 + L1_Mm LINE L1 4940 5520 -363 7 1183 1907 149 0 7 chr6 78476045 78476355 -71040682 - RLTR10E LTR ERVK -3 308 1 7 1183 203 0 37 0 chr6 78476454 78476481 -71040556 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1183 222 219 0 0 chr6 78476653 78476717 -71040320 + CT-rich Low_complexity Low_complexity 1 64 0 7 1183 259 299 20 20 chr6 78476728 78476827 -71040210 + CT-rich Low_complexity Low_complexity 2 100 0 7 1183 1629 84 8 29 chr6 78477334 78477580 -71039457 - L1_Mus3 LINE L1 -2 6636 6396 7 1183 779 238 12 0 chr6 78477671 78477831 -71039206 - MTD LTR MaLR -12 407 246 7 1183 261 0 0 0 chr6 78478604 78478633 -71038404 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1183 638 305 29 20 chr6 78478656 78478860 -71038177 + B3 SINE B2 2 207 -9 7 1183 4953 64 1 3 chr6 78479076 78479738 -71037299 + L1Md_F2 LINE L1 4926 5586 -297 7 1183 7736 60 4 1 chr6 78479738 78480718 -71036319 + L1Md_F2 LINE L1 5587 6569 -13 7 1183 437 297 100 58 chr6 78481521 78481548 -71035489 - RLTR12B LTR ERVK -12 516 488 7 1183 5121 43 0 3 chr6 78481548 78482157 -71034880 - L1Md_F2 LINE L1 -14 6568 5962 7 1183 437 297 100 58 chr6 78482157 78482390 -71034647 - RLTR12B LTR ERVK -41 487 245 7 1183 833 266 36 29 chr6 78482378 78482657 -71034380 - RLTR12B LTR ERVK -201 327 47 7 1183 221 320 87 0 chr6 78482801 78482904 -71034133 + B3 SINE B2 99 210 -6 7 1183 460 284 0 29 chr6 78483533 78483638 -71033399 + ID_B1 SINE B4 94 195 -29 7 1183 578 47 0 61 chr6 78483640 78483754 -71033283 + (TCTCC)n Simple_repeat Simple_repeat 5 111 0 7 1183 366 23 0 0 chr6 78483757 78483800 -71033237 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1183 1128 68 0 7 chr6 78485730 78485878 -71031159 + B1_Mus1 SINE Alu 2 148 0 7 1183 422 69 69 0 chr6 78485889 78485990 -71031047 + (CAAAC)n Simple_repeat Simple_repeat 2 109 0 7 1183 800 218 20 0 chr6 78486046 78486193 -71030844 - B1_Mur4 SINE Alu 0 150 1 7 1183 1097 92 0 12 chr6 78486211 78486376 -71030661 + (TTTC)n Simple_repeat Simple_repeat 1 163 0 7 1183 955 323 40 23 chr6 78486540 78486936 -71030101 - RMER5 LTR ERV1 0 534 132 7 1183 182 272 215 37 chr6 78488396 78488503 -71028534 - MIRc SINE MIR -104 164 39 7 1183 340 295 152 23 chr6 78488551 78488728 -71028309 + 7SK RNA RNA 1 200 -131 7 1183 1047 77 14 20 chr6 78488841 78488987 -71028050 + B1_Mm SINE Alu 1 145 -2 7 1183 3648 86 7 52 chr6 78489034 78489588 -71027449 + L1_Mus2 LINE L1 6038 6566 0 7 1183 216 244 0 0 chr6 78489602 78489643 -71027394 + polypurine Low_complexity Low_complexity 2 42 0 7 1183 990 107 0 0 chr6 78489645 78489822 -71027215 + (GGAA)n Simple_repeat Simple_repeat 1 177 0 7 1183 307 287 23 11 chr6 78490745 78490833 -71026204 - RMER15 LTR ERVL -69 506 418 7 1183 627 14 0 0 chr6 78491832 78491904 -71025133 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 1183 737 284 12 54 chr6 78491971 78492302 -71024735 - Lx9 LINE L1 -276 7368 7052 7 1183 583 335 37 37 chr6 78492949 78493219 -71023818 + B4 SINE B4 11 280 -12 7 1183 1429 228 10 3 chr6 78493416 78493728 -71023309 + Lx4A LINE L1 6745 7058 0 7 1183 1101 180 27 9 chr6 78495193 78495412 -71021625 + URR1A DNA MER1_type 1 223 -3 7 1183 314 322 117 76 chr6 78495501 78495844 -71021193 + ORR1E LTR MaLR 3 359 0 7 1183 1499 240 55 17 chr6 78495885 78496288 -71020749 + MTD LTR MaLR 1 418 -1 7 1183 478 83 0 14 chr6 78499208 78499281 -71017756 - B1_Mur4 SINE Alu 0 150 79 7 1183 306 345 70 76 chr6 78499306 78499491 -71017546 - LTR50 LTR ERVL -610 185 2 7 1183 494 190 25 17 chr6 78499643 78499761 -71017276 + RLTR15 LTR ERVK 1 119 -240 7 1183 242 115 94 47 chr6 78499759 78499823 -71017214 + RLTR15 LTR ERVK 278 344 -15 7 1183 302 0 0 26 chr6 78500215 78500254 -71016783 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1183 631 300 40 0 chr6 78501214 78501364 -71015673 - RSINE1 SINE B4 -8 157 2 2 1183 613 205 162 24 chr6 78501399 78501609 -71015428 - L1MA6 LINE L1 -35 6265 6027 3 1183 208 227 0 0 chr6 78501740 78501784 -71015253 + (CAG)n Simple_repeat Simple_repeat 1 44 0 4 1183 504 338 131 13 chr6 78502619 78502931 -71014106 + ORR1E LTR MaLR 9 357 -2 5 1183 245 222 19 0 chr6 78503063 78503117 -71013920 + ID_B1 SINE B4 169 223 -1 6 1183 458 326 59 64 chr6 78503976 78504163 -71012874 - B3 SINE B2 -30 186 1 7 1183 1001 214 38 24 chr6 78504888 78505099 -71011938 + URR1B DNA MER1_type 12 225 0 8 1183 403 259 101 61 chr6 78505328 78505476 -71011561 + MTE2a LTR MaLR 226 379 0 9 1183 259 209 16 98 chr6 78505871 78505993 -71011044 + Lx8 LINE L1 7353 7464 -9 1 1183 243 292 8 74 chr6 78506250 78506372 -71010665 + BC1_Mm scRNA scRNA 3 116 -36 1 1183 248 300 29 58 chr6 78506894 78507032 -71010005 - L1M5 LINE L1 -848 5596 5463 1 1183 422 276 120 16 chr6 78507230 78507355 -71009682 - B1_Mur1 SINE Alu -6 143 6 1 1183 381 43 0 0 chr6 78507371 78507418 -71009619 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1183 267 314 10 19 chr6 78507502 78507606 -71009431 - Lx8 LINE L1 -136 7337 7235 1 1183 4800 206 27 23 chr6 78507606 78508630 -71008407 - RLTR25B LTR ERVK 0 1028 1 1 1183 216 97 0 0 chr6 78508634 78508665 -71008372 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1183 1107 104 0 0 chr6 78509265 78509409 -71007628 - B1_Mus2 SINE Alu -3 144 1 1 1183 5423 203 58 14 chr6 78509573 78511274 -71005763 + L1VL4 LINE L1 881 2655 -3231 1 147 6337 164 31 65 chr6 78511273 78512694 -71004343 + L1VL4 LINE L1 3111 4520 -1357 1 1184 879 156 0 7 chr6 78512694 78512830 -71004207 + B1_Mus1 SINE Alu 5 139 -9 2 1184 6337 164 31 65 chr6 78512830 78512986 -71004051 + L1VL4 LINE L1 4521 4634 -1243 1 1184 2438 149 28 0 chr6 78512964 78513399 -71003638 + L1VL4 LINE L1 5263 5709 -177 1 1184 2564 64 20 14 chr6 78513463 78513814 -71003223 + L1_Mus2 LINE L1 6212 6564 -2 2 1184 3904 155 36 13 chr6 78513826 78514612 -71002425 - L1_Mur2 LINE L1 -1063 4814 4011 2 1184 6567 102 104 2 chr6 78514615 78515750 -71001287 + L1_Mus4 LINE L1 5296 6619 -17 2 1184 297 0 0 0 chr6 78515751 78515784 -71001253 + (TAA)n Simple_repeat Simple_repeat 1 33 0 2 1184 6430 175 48 24 chr6 78515788 78516679 -71000358 + Lx2B LINE L1 5456 6391 -609 2 1184 3731 64 0 28 chr6 78516679 78517180 -70999857 + L1Md_F3 LINE L1 6098 6584 0 2 1184 6430 175 49 28 chr6 78517180 78517802 -70999235 + Lx2B LINE L1 6392 6998 -2 2 1184 240 319 233 7 chr6 78518199 78518345 -70998692 - MTEb LTR MaLR -192 187 9 2 1184 384 343 115 23 chr6 78518404 78518622 -70998415 + B4 SINE B4 36 273 -19 2 1184 261 0 0 0 chr6 78518642 78518671 -70998366 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1184 1032 38 0 0 chr6 78518671 78518803 -70998234 + (GA)n Simple_repeat Simple_repeat 2 134 0 3 1184 416 253 22 20 chr6 78520103 78520264 -70996773 - Lx4A LINE L1 -17 7041 6876 3 1184 1444 174 39 44 chr6 78520279 78520676 -70996361 - L1_Mus1 LINE L1 -626 5941 5741 3 1184 1648 39 0 28 chr6 78520676 78520887 -70996150 + L1_Mus1 LINE L1 6363 6567 0 3 1184 5197 133 20 21 chr6 78520895 78521755 -70995282 + Lx LINE L1 5783 6641 -13 3 1184 1123 270 80 89 chr6 78521755 78521781 -70995256 - L1_Mus1 LINE L1 -424 6634 6618 3 1184 707 87 0 9 chr6 78521781 78521886 -70995151 + (TA)n Simple_repeat Simple_repeat 1 104 0 3 1184 324 0 0 0 chr6 78521886 78521921 -70995116 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1184 1123 270 80 89 chr6 78521921 78522149 -70994888 - L1_Mus1 LINE L1 -441 6617 6392 3 1184 5874 164 80 11 chr6 78522175 78523374 -70993663 - Lx3A LINE L1 -7 6974 5693 3 1184 390 266 57 6 chr6 78523341 78523500 -70993537 - L1M2 LINE L1 -656 5635 5469 3 1184 711 303 17 29 chr6 78523731 78523948 -70993089 + B3A SINE B2 3 213 -3 3 1184 217 197 16 16 chr6 78524026 78524088 -70992949 + (ATG)n Simple_repeat Simple_repeat 2 63 0 4 1184 453 19 0 0 chr6 78524526 78524580 -70992457 + (CAGA)n Simple_repeat Simple_repeat 3 56 0 4 1184 3155 62 15 0 chr6 78524885 78525291 -70991746 - L1_Mus1 LINE L1 0 6567 6156 4 1184 595 246 68 68 chr6 78525462 78525654 -70991383 - B3A SINE B2 -6 192 1 4 1184 366 349 20 36 chr6 78527387 78527583 -70989454 + MTE-int LTR MaLR 1123 1315 -265 4 1184 251 222 19 0 chr6 78527582 78527636 -70989401 + MTEa LTR MaLR 325 379 0 4 1184 520 342 7 65 chr6 78527701 78527995 -70989042 + L1_Mur3 LINE L1 339 615 -7113 4 1184 1797 73 0 4 chr6 78528068 78528342 -70988695 + MusHAL1 LINE L1 114 386 -2326 4 1184 7954 197 31 69 chr6 78528419 78528570 -70988467 + L1_Mur3 LINE L1 2398 2557 -3323 4 1184 269 0 56 0 chr6 78528570 78528606 -70988431 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 4 1184 7954 197 31 69 chr6 78528606 78528859 -70988178 + L1_Mur3 LINE L1 2558 2726 -3154 4 1184 1127 72 0 43 chr6 78528859 78529047 -70987990 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 4 1184 7954 197 31 69 chr6 78529047 78529102 -70987935 + L1_Mur3 LINE L1 2727 2752 -3128 4 1184 660 26 0 0 chr6 78529102 78529180 -70987857 + (GGAAA)n Simple_repeat Simple_repeat 3 80 0 5 1184 7954 197 31 69 chr6 78529180 78531032 -70986005 + L1_Mur3 LINE L1 2753 4623 -1257 4 1184 253 291 49 25 chr6 78531201 78531282 -70985755 + PB1D7 SINE Alu 3 85 -35 5 1184 634 270 50 39 chr6 78531314 78531495 -70985542 - RMER15 LTR ERVL -42 533 351 5 1184 657 297 56 60 chr6 78531498 78531926 -70985111 + RLTR12B LTR ERVK 42 465 -103 5 1184 504 278 11 100 chr6 78531929 78532109 -70984928 - RMER15 LTR ERVL -390 185 22 5 1184 221 276 0 0 chr6 78532187 78532245 -70984792 + A-rich Low_complexity Low_complexity 1 58 0 5 1184 28 0 0 0 chr6 78533298 78533326 -70983711 + AT_rich Low_complexity Low_complexity 1 28 0 5 1184 6408 182 42 42 chr6 78533460 78534876 -70982161 + Lx4B LINE L1 5623 7037 -21 5 1184 191 36 0 35 chr6 78534876 78534905 -70982132 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 5 1184 262 322 97 9 chr6 78535994 78536152 -70980885 + ID_B1 SINE B4 5 211 -13 5 1184 200 34 0 33 chr6 78536153 78536183 -70980854 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 1184 21 0 0 0 chr6 78536188 78536209 -70980828 + AT_rich Low_complexity Low_complexity 1 21 0 6 1184 657 305 39 0 chr6 78536237 78536391 -70980646 - RSINE1 SINE B4 0 165 6 6 1184 692 236 48 0 chr6 78538531 78538696 -70978341 + Lx5 LINE L1 6208 6380 -670 6 1184 1537 276 39 20 chr6 78538663 78539170 -70977867 + Lx5 LINE L1 6515 7031 -19 6 1184 661 289 58 26 chr6 78539197 78539479 -70977558 + ORR1D2 LTR MaLR 50 354 -5 6 1184 423 0 0 0 chr6 78539727 78539774 -70977263 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1184 508 310 40 20 chr6 78539838 78540039 -70976998 - Lx8 LINE L1 -102 7371 7167 6 1184 235 266 31 0 chr6 78540447 78540511 -70976526 + GA-rich Low_complexity Low_complexity 4 69 0 6 1184 1023 99 0 0 chr6 78540910 78541082 -70975955 + (GA)n Simple_repeat Simple_repeat 1 172 0 6 1184 234 116 0 0 chr6 78541095 78541138 -70975899 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1184 350 161 11 0 chr6 78541137 78541230 -70975807 + (CA)n Simple_repeat Simple_repeat 2 95 0 6 1184 429 20 0 0 chr6 78541230 78541280 -70975757 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1184 375 348 119 5 chr6 78541396 78541598 -70975439 + MLT1K LTR MaLR 336 560 -35 7 1184 184 337 79 0 chr6 78542119 78542220 -70974817 - MIRc SINE MIR -77 191 83 7 1184 661 318 19 139 chr6 78542254 78542671 -70974366 + MTEa LTR MaLR 2 368 -11 7 1184 270 219 55 0 chr6 78542730 78542803 -70974234 + MER20 DNA MER1_type 45 121 -98 7 1184 952 197 54 40 chr6 78543111 78543333 -70973704 - URR1B DNA MER1_type 0 225 1 7 1184 38 61 0 0 chr6 78543422 78543488 -70973549 + AT_rich Low_complexity Low_complexity 1 66 0 7 1184 376 299 125 77 chr6 78544382 78544723 -70972314 + RMER20B LTR ERVK 115 494 -22 7 1184 551 299 76 100 chr6 78544842 78545058 -70971979 + B4 SINE B4 48 267 -25 7 1184 834 20 0 0 chr6 78545058 78545158 -70971879 + (CA)n Simple_repeat Simple_repeat 2 101 0 7 1184 551 299 76 100 chr6 78545158 78545190 -70971847 + B4 SINE B4 268 290 -2 7 1184 370 314 0 44 chr6 78545247 78545430 -70971607 + GA-rich Low_complexity Low_complexity 2 176 0 7 1184 379 269 123 39 chr6 78545431 78545586 -70971451 + HAL1-3A_ME LINE L1 2281 2448 -410 8 1184 1949 53 0 0 chr6 78545702 78545948 -70971089 + L1Md_A LINE L1 6337 6582 0 8 1184 612 326 13 44 chr6 78546624 78546922 -70970115 - B4A SINE B4 0 292 4 8 1184 202 68 22 43 chr6 78546956 78547002 -70970035 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 8 1184 933 289 98 0 chr6 78548397 78548715 -70968322 - MTE2b LTR MaLR -13 366 18 8 1184 3937 111 106 143 chr6 78550993 78551933 -70965104 - RMER17A2 LTR ERVK 0 906 1 8 1184 332 288 32 41 chr6 78551986 78552109 -70964928 + ORR1D2 LTR MaLR 6 127 -243 8 1184 1538 216 0 18 chr6 78552109 78552444 -70964593 - Lx4A LINE L1 -592 6466 6138 8 1184 464 132 0 0 chr6 78552435 78552518 -70964519 + Lx4B LINE L1 5711 5793 -1265 8 1184 12979 19 1 0 chr6 78552514 78554085 -70962952 + L1Md_T LINE L1 4015 5586 -297 8 1184 8021 56 0 0 chr6 78554085 78555080 -70961957 + L1Md_T LINE L1 5587 6581 -1 8 1184 31 0 0 0 chr6 78555080 78555111 -70961926 + AT_rich Low_complexity Low_complexity 1 31 0 9 1184 1924 162 11 0 chr6 78555111 78555468 -70961569 + Lx4B LINE L1 5783 6143 -915 8 1184 8113 53 0 0 chr6 78556255 78557266 -70959771 - L1Md_F2 LINE L1 -162 5721 4711 9 1184 6473 65 8 9 chr6 78557260 78558117 -70958920 + L1Md_F2 LINE L1 5726 6581 -1 9 1184 357 24 0 0 chr6 78558484 78558526 -70958511 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1184 310 308 101 58 chr6 78559737 78559875 -70957162 + B4A SINE B4 149 292 0 9 1184 2037 154 17 0 chr6 78560394 78560751 -70956286 - L1_Mur2 LINE L1 -1136 4741 4379 9 1184 8159 138 35 5 chr6 78560743 78562062 -70954975 + Lx2 LINE L1 5640 6997 0 9 1184 475 356 61 32 chr6 78562116 78562395 -70954642 + MTE-int LTR MaLR 156 442 -1138 9 1184 35 24 0 0 chr6 78562417 78562459 -70954578 + AT_rich Low_complexity Low_complexity 1 42 0 9 1184 549 254 9 9 chr6 78563729 78563844 -70953193 + B3A SINE B2 1 115 -83 9 1184 1302 38 0 0 chr6 78563854 78564014 -70953023 + (TC)n Simple_repeat Simple_repeat 1 160 0 9 1184 516 32 0 0 chr6 78564014 78564075 -70952962 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1184 1906 206 15 13 chr6 78564126 78564519 -70952518 - ORR1B1 LTR MaLR 0 394 1 1 1184 3416 220 130 42 chr6 78564519 78565329 -70951708 - ORR1B1-int LTR MaLR 0 1509 627 1 1184 867 20 0 0 chr6 78565329 78565430 -70951607 + (TTC)n Simple_repeat Simple_repeat 2 102 0 1 1184 3416 220 130 42 chr6 78565430 78565705 -70951332 - ORR1B1-int LTR MaLR -883 626 329 1 1184 1186 202 40 18 chr6 78565705 78566032 -70951005 - RMER17C LTR ERVK 0 410 77 1 1184 794 190 36 60 chr6 78566056 78566308 -70950729 - RMER17C LTR ERVK -164 246 1 1 1184 2196 160 62 24 chr6 78566308 78566725 -70950312 - RMER17C-int LTR ERVK 0 3238 2806 1 1184 1232 208 101 10 chr6 78566730 78567026 -70950011 - ORR1B1-int LTR MaLR -1186 323 1 1 1184 1375 220 21 24 chr6 78567030 78567319 -70949718 - ORR1B1 LTR MaLR -8 386 99 1 1184 331 344 31 15 chr6 78567315 78567445 -70949592 + ID_B1 SINE B4 73 204 -20 1 1184 676 294 38 52 chr6 78567600 78567812 -70949225 - B3 SINE B2 -6 210 2 1 1184 32 26 0 0 chr6 78567816 78567855 -70949182 + AT_rich Low_complexity Low_complexity 1 39 0 1 1184 700 290 103 0 chr6 78567948 78568172 -70948865 + Lx8 LINE L1 7083 7329 -144 1 1184 275 363 15 15 chr6 78569284 78569421 -70947616 + (CATG)n Simple_repeat Simple_repeat 3 139 0 1 1184 33 0 0 0 chr6 78570497 78570530 -70946507 + AT_rich Low_complexity Low_complexity 1 33 0 1 1184 781 278 53 22 chr6 78572028 78572256 -70944781 - MTE2b LTR MaLR -2 377 143 1 1184 204 40 0 0 chr6 78572625 78572650 -70944387 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 1 1184 454 298 67 11 chr6 78572871 78573125 -70943912 - MER67D LTR ERV1 -28 486 244 1 1184 5944 156 21 4 chr6 78573501 78574758 -70942279 + L1VL4 LINE L1 1 1151 -2408 1 1184 9824 95 29 10 chr6 78574744 78576281 -70940756 + L1VL4 LINE L1 1995 3559 0 1 1184 1284 143 5 5 chr6 78576405 78576609 -70940428 + RMER19A LTR ERVK 523 726 -11 1 1184 1071 119 11 11 chr6 78576609 78576788 -70940249 + L1_Mus3 LINE L1 6458 6636 -2 1 1184 615 319 20 9 chr6 78577054 78577259 -70939778 + B3A SINE B2 1 206 -10 1 1184 507 33 0 0 chr6 78577859 78577920 -70939117 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1184 237 407 35 28 chr6 78578431 78578575 -70938462 - LTR88c LTR Genie? -517 345 201 1 1184 613 294 24 59 chr6 78579355 78579525 -70937512 + RSINE1 SINE B4 2 165 0 1 1184 649 67 52 15 chr6 78579550 78579686 -70937351 + (CAGAGA)n Simple_repeat Simple_repeat 6 146 0 1 1184 459 113 0 0 chr6 78579686 78579757 -70937280 + (CACG)n Simple_repeat Simple_repeat 1 71 0 1 1184 507 306 16 0 chr6 78579781 78579905 -70937132 + RSINE1 SINE B4 4 129 -36 1 1184 29 0 0 0 chr6 78579948 78579977 -70937060 + AT_rich Low_complexity Low_complexity 1 29 0 1 1184 1721 231 33 6 chr6 78580033 78580394 -70936643 - ORR1B1 LTR MaLR -22 372 2 1 1184 5980 214 41 41 chr6 78580395 78581898 -70935139 - ORR1B1-int LTR MaLR 0 1509 8 1 1184 368 173 13 0 chr6 78581894 78581969 -70935068 - ORR1B1-int LTR MaLR -1058 451 376 1 1184 335 317 41 0 chr6 78582120 78582243 -70934794 - MLT1D LTR MaLR -334 171 44 1 1184 2018 131 6 59 chr6 78582473 78582814 -70934223 - ORR1A2 LTR MaLR 0 327 5 1 1184 22 0 0 0 chr6 78583395 78583417 -70933620 + AT_rich Low_complexity Low_complexity 1 22 0 1 1184 220 170 38 0 chr6 78583565 78583618 -70933419 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1 1184 808 279 69 63 chr6 78583875 78584223 -70932814 + ORR1E LTR MaLR 4 353 -6 1 1184 1137 82 0 0 chr6 78584554 78584701 -70932336 - B1_Mus1 SINE Alu 0 148 2 1 1184 468 0 0 0 chr6 78585430 78585482 -70931555 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1184 894 66 0 0 chr6 78586478 78586600 -70930437 + (TG)n Simple_repeat Simple_repeat 2 123 0 1 1184 1115 254 115 33 chr6 78586727 78587118 -70929919 + Lx8 LINE L1 7049 7471 -2 1 1184 39376 25 2 6 chr6 78587318 78593330 -70923707 - L1Md_A LINE L1 -1 6581 599 1 1184 831 298 39 35 chr6 78593332 78593791 -70923246 - L1MA4 LINE L1 -448 5852 5392 1 1184 304 40 40 0 chr6 78593825 78593875 -70923162 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 1 1184 954 69 61 0 chr6 78593877 78594008 -70923029 - B1_Mus2 SINE Alu -8 139 1 1 1184 277 292 28 28 chr6 78594189 78594330 -70922707 - L1MA5 LINE L1 -383 5917 5777 1 1184 347 349 8 8 chr6 78594339 78594469 -70922568 + MTE2b LTR MaLR 1 130 -249 1 1184 447 294 8 8 chr6 78594470 78594597 -70922440 - MTD LTR MaLR -292 127 1 1 1184 1015 142 9 97 chr6 78594750 78594977 -70922060 + L1_Mus3 LINE L1 6432 6638 0 1 1184 29 47 0 0 chr6 78595204 78595247 -70921790 + AT_rich Low_complexity Low_complexity 1 43 0 1 1184 2601 153 50 4 chr6 78595464 78595963 -70921074 + L1_Mur1 LINE L1 3545 4066 -1820 1 1184 26 82 0 0 chr6 78595993 78596054 -70920983 + AT_rich Low_complexity Low_complexity 1 61 0 1 1184 225 333 107 16 chr6 78597344 78597466 -70919571 + Lx8 LINE L1 7197 7329 -144 1 1184 279 0 0 0 chr6 78597467 78597498 -70919539 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1184 633 281 5 45 chr6 78598879 78599080 -70917957 + B3A SINE B2 3 195 -3 1 1184 228 209 50 7 chr6 78599649 78599789 -70917248 + (TATATG)n Simple_repeat Simple_repeat 3 148 0 1 1184 372 335 55 31 chr6 78600437 78600600 -70916437 + B3A SINE B2 1 167 -31 1 1184 210 192 19 0 chr6 78600600 78600652 -70916385 + CT-rich Low_complexity Low_complexity 2 54 0 1 1184 330 182 0 0 chr6 78600652 78600718 -70916319 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1184 980 175 6 0 chr6 78601264 78601447 -70915590 + Lx2 LINE L1 5102 5285 -592 1 1184 860 158 12 46 chr6 78601450 78601618 -70915419 + B2_Mm2 SINE B2 2 164 -31 1 1184 7386 138 19 2 chr6 78601618 78602812 -70914225 + Lx2 LINE L1 5783 6997 0 1 1184 354 325 78 50 chr6 78602992 78603265 -70913772 - MTEb LTR MaLR -2 377 50 1 1184 263 274 46 35 chr6 78603543 78603630 -70913407 - MIR SINE MIR -173 89 2 1 1184 242 242 81 108 chr6 78604731 78604842 -70912195 + RLTR42 LTR ERVK 132 239 0 1 1184 261 0 0 0 chr6 78605528 78605557 -70911480 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1184 521 233 0 58 chr6 78606706 78606861 -70910176 - Lx7 LINE L1 -1 7695 7550 1 1184 547 331 48 67 chr6 78606868 78607182 -70909855 + MTE2a LTR MaLR 15 322 -57 1 1184 400 140 6 16 chr6 78607690 78607782 -70909255 - L1_Mur2 LINE L1 -1224 4659 4565 1 1184 21797 64 3 2 chr6 78607778 78611367 -70905670 - L1Md_F2 LINE L1 0 6582 2993 1 1184 1820 224 73 2 chr6 78611380 78611805 -70905232 + Lx3C LINE L1 6520 6974 -2 1 1184 1130 58 0 0 chr6 78611874 78612012 -70905025 + B1_Mm SINE Alu 1 138 -9 1 1184 315 232 43 0 chr6 78612222 78612291 -70904746 - B1F SINE Alu -65 84 13 1 1184 225 0 0 0 chr6 78612489 78612514 -70904523 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1184 1379 166 10 52 chr6 78612718 78613024 -70904013 + Lx LINE L1 6362 6654 0 1 1184 265 322 58 17 chr6 78613608 78613728 -70903309 - L1MC1 LINE L1 -192 6141 6017 1 1184 1948 217 34 86 chr6 78613780 78614156 -70902881 - Lx9 LINE L1 -1 7643 7311 1 1184 414 0 0 0 chr6 78614156 78614202 -70902835 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1184 1948 217 34 86 chr6 78614202 78614445 -70902592 - Lx9 LINE L1 -334 7310 7056 1 1184 322 278 151 39 chr6 78614437 78614669 -70902368 - L1MC1 LINE L1 -362 5971 5714 1 1184 25 65 0 0 chr6 78614691 78614737 -70902300 + AT_rich Low_complexity Low_complexity 1 46 0 1 1184 468 277 9 0 chr6 78615677 78615789 -70901248 + MTE2a LTR MaLR 1 113 -266 1 1184 308 287 58 0 chr6 78615822 78615909 -70901128 - MTE2b LTR MaLR -10 369 278 1 1184 696 213 78 89 chr6 78616115 78616306 -70900731 - B3 SINE B2 -6 189 1 1 1184 623 286 37 6 chr6 78616504 78616666 -70900371 + B3A SINE B2 6 172 -26 1 1184 284 322 58 36 chr6 78616848 78617125 -70899912 - L1M3 LINE L1 -1330 4813 4531 1 1184 422 36 18 0 chr6 78617270 78617326 -70899711 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1184 213 219 0 0 chr6 78617329 78617370 -70899667 + GA-rich Low_complexity Low_complexity 1 41 0 1 1184 340 219 75 62 chr6 78617377 78617538 -70899499 - L1M3 LINE L1 -1802 4338 4176 1 1184 304 333 0 0 chr6 78617606 78617693 -70899344 + MER119 DNA MER1_type 236 322 -261 1 1184 31 0 0 0 chr6 78619295 78619326 -70897711 + AT_rich Low_complexity Low_complexity 1 31 0 1 1184 297 329 50 14 chr6 78620690 78620790 -70896247 - PB1D10 SINE Alu -5 115 19 1 1184 603 34 34 0 chr6 78622477 78622566 -70894471 + L1Md_F2 LINE L1 6491 6582 0 1 1184 587 277 33 33 chr6 78623571 78623754 -70893283 - B3A SINE B2 -15 183 1 1 1184 192 40 0 0 chr6 78625202 78625227 -70891810 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1184 600 14 0 0 chr6 78625228 78625297 -70891740 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1184 717 235 105 30 chr6 78626599 78626976 -70890061 - L1MD LINE L1 -816 5543 5141 1 1184 1378 163 12 4 chr6 78627457 78627703 -70889334 + Lx2A1 LINE L1 6756 7003 -5 1 1184 298 238 33 67 chr6 78628343 78628433 -70888604 + ORR1E LTR MaLR 1 87 -272 1 1184 2712 262 73 48 chr6 78628439 78628982 -70888055 + Lx6 LINE L1 6553 7143 -317 1 1184 207 0 0 0 chr6 78628982 78629005 -70888032 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1184 567 259 22 0 chr6 78629005 78629140 -70887897 - B1_Mur3 SINE Alu -11 138 1 1 1184 2712 262 73 48 chr6 78629140 78629473 -70887564 + Lx6 LINE L1 7144 7451 -9 1 1184 336 200 0 0 chr6 78629807 78629917 -70887120 + GA-rich Low_complexity Low_complexity 1 110 0 1 1184 437 295 62 8 chr6 78630430 78630560 -70886477 - B3A SINE B2 -2 196 60 1 1184 1703 168 12 65 chr6 78630568 78630982 -70886055 - RMER17C LTR ERVK 0 410 19 1 1184 234 62 0 0 chr6 78631002 78631034 -70886003 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1184 633 27 0 0 chr6 78631034 78631108 -70885929 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 1184 387 0 0 0 chr6 78631108 78631150 -70885887 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1184 556 258 0 8 chr6 78631862 78631983 -70885054 - MT2A LTR ERVL -412 121 2 1 1184 474 317 56 48 chr6 78632598 78633330 -70883707 + L1MA5A LINE L1 5133 5866 -431 2 1184 278 343 0 0 chr6 78633347 78633446 -70883591 - PB1D10 SINE Alu -1 116 18 2 1184 517 286 227 13 chr6 78633924 78634162 -70882875 + B4 SINE B4 2 290 -2 2 1184 198 0 0 0 chr6 78635155 78635177 -70881860 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1184 649 320 38 14 chr6 78635549 78635758 -70881279 + B3A SINE B2 1 214 -2 2 1184 225 0 0 0 chr6 78635851 78635876 -70881161 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 1184 250 154 0 0 chr6 78635876 78635915 -70881122 - ID_B1 SINE B4 -12 212 174 2 1184 218 216 59 0 chr6 78635915 78635927 -70881110 - PB1D10 SINE Alu -12 105 52 2 1184 1268 105 10 10 chr6 78636001 78636193 -70880844 - B2_Mm2 SINE B2 -1 194 3 2 1184 436 273 0 0 chr6 78636402 78636501 -70880536 + RMER1B Other Other 230 328 -738 2 1184 285 215 160 11 chr6 78636967 78637061 -70879976 + RMER5 LTR ERV1 1 108 -426 2 1184 4958 84 13 3 chr6 78637067 78637749 -70879288 - L1Md_F2 LINE L1 -12 6570 5882 2 1184 542 45 0 0 chr6 78637750 78637816 -70879221 + L1Md_F2 LINE L1 5822 5887 -695 2 1184 386 259 18 18 chr6 78637816 78637930 -70879107 + RMER5 LTR ERV1 103 216 -318 2 1184 398 249 116 85 chr6 78637955 78637989 -70879048 + RMER5 LTR ERV1 306 339 -195 2 1184 1851 35 0 9 chr6 78637989 78638220 -70878817 - L1Md_F2 LINE L1 -2 6580 6352 2 1184 398 249 116 85 chr6 78638220 78638374 -70878663 + RMER5 LTR ERV1 340 500 -34 2 1184 473 349 49 22 chr6 78638653 78638920 -70878117 + B4A SINE B4 1 274 -18 2 1184 554 192 0 16 chr6 78639001 78639128 -70877909 + (TATATG)n Simple_repeat Simple_repeat 2 126 0 2 1184 326 195 11 0 chr6 78639196 78639283 -70877754 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 1184 392 369 57 65 chr6 78640448 78640799 -70876238 + ORR1E LTR MaLR 1 348 -11 2 1184 192 111 0 0 chr6 78640888 78640924 -70876113 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1184 344 94 71 9 chr6 78640966 78641034 -70876003 - RMER1A Other Other -16 1014 957 2 1184 1292 172 76 73 chr6 78641105 78641501 -70875536 - RMER17C LTR ERVK -13 397 1 2 1184 1409 291 41 78 chr6 78641561 78642075 -70874962 - RMER1B Other Other -541 525 31 2 1184 1129 299 112 21 chr6 78642373 78642845 -70874192 + Lx8 LINE L1 6959 7473 0 2 1184 258 352 139 37 chr6 78642873 78643118 -70873919 + MLT1C LTR MaLR 169 438 -29 2 1185 21 0 0 0 chr6 78643432 78643453 -70873584 + AT_rich Low_complexity Low_complexity 1 21 0 2 1185 545 271 7 73 chr6 78644210 78644361 -70872676 + B1_Mur1 SINE Alu 9 149 0 2 1185 213 235 0 19 chr6 78644361 78644413 -70872624 + A-rich Low_complexity Low_complexity 3 53 0 2 1185 715 358 54 36 chr6 78644820 78645291 -70871746 - MLT1E2 LTR MaLR -74 553 87 2 1185 1281 70 0 0 chr6 78645460 78645673 -70871364 + (TTTC)n Simple_repeat Simple_repeat 1 213 0 2 1185 204 97 0 0 chr6 78645678 78645709 -70871328 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1185 322 304 56 8 chr6 78645734 78645860 -70871177 - B1F SINE Alu -1 148 17 2 1185 2666 158 35 24 chr6 78646355 78646848 -70870189 + RLTR19 LTR ERVK 2 499 0 2 1185 331 410 0 12 chr6 78648219 78648382 -70868655 + RSINE1 SINE B4 5 165 0 2 1185 387 0 0 0 chr6 78648383 78648426 -70868611 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 2 1185 238 228 53 0 chr6 78648454 78648511 -70868526 + L1MA7 LINE L1 5200 5259 -881 2 1185 689 337 62 20 chr6 78648668 78648722 -70868315 + L1MA7 LINE L1 5485 5534 -757 2 1185 798 199 57 239 chr6 78648722 78649178 -70867859 - ORR1D1 LTR MaLR -1 373 1 2 1185 689 337 62 20 chr6 78649178 78649577 -70867460 + L1MA7 LINE L1 5535 5957 -334 2 1185 393 22 0 0 chr6 78649682 78649728 -70867309 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1185 707 262 128 11 chr6 78649752 78650034 -70867003 + L1MA7 LINE L1 5959 6273 -18 2 1185 328 242 83 30 chr6 78651056 78651188 -70865849 - L1MA6 LINE L1 0 6300 6162 2 1185 4645 86 16 25 chr6 78651248 78651942 -70865095 + L1_Mus4 LINE L1 5949 6636 0 2 1185 342 304 62 39 chr6 78652299 78652429 -70864608 + ID_B1 SINE B4 77 209 -15 2 1185 3580 241 155 20 chr6 78652956 78653579 -70863458 + Lx9 LINE L1 6367 7091 -553 2 1185 4726 130 11 60 chr6 78653579 78654424 -70862613 - RLTR13B4 LTR ERVK 0 803 1 2 1185 3580 241 155 20 chr6 78654424 78654926 -70862111 + Lx9 LINE L1 7092 7644 0 2 1185 441 50 0 0 chr6 78655496 78655556 -70861481 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1185 1919 148 16 12 chr6 78656028 78656350 -70860687 + ORR1A2 LTR MaLR 1 323 -4 2 1185 233 57 29 0 chr6 78656525 78656560 -70860477 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 2 1185 288 0 0 0 chr6 78657832 78657864 -70859173 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2 1185 522 0 0 0 chr6 78657904 78657962 -70859075 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1185 298 330 16 25 chr6 78658294 78658415 -70858622 + B4A SINE B4 168 287 -5 2 1185 4244 129 56 0 chr6 78658851 78659511 -70857526 + L1Md_F2 LINE L1 366 1062 -5554 2 1185 6253 68 7 0 chr6 78659511 78660333 -70856704 + L1Md_F2 LINE L1 4757 5584 -299 2 1185 7496 70 5 4 chr6 78660336 78661330 -70855707 + L1Md_F2 LINE L1 5588 6582 0 2 1185 32320 92 3 7 chr6 78661334 78666302 -70850735 + L1Md_F2 LINE L1 1073 6021 -561 2 1185 37751 19 0 8 chr6 78666291 78671517 -70845520 + L1Md_A LINE L1 412 5586 -297 2 1185 8593 27 0 0 chr6 78671517 78672513 -70844524 + L1Md_A LINE L1 5587 6582 0 2 1185 3938 103 2 12 chr6 78672513 78673160 -70843877 + L1Md_F2 LINE L1 6005 6582 0 2 1185 209 33 33 0 chr6 78673346 78673376 -70843661 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 2 1185 16368 241 62 32 chr6 78673376 78674533 -70842504 - Lx2B LINE L1 -31 6969 5730 2 1185 714 12 0 0 chr6 78674533 78674616 -70842421 + (TC)n Simple_repeat Simple_repeat 2 84 0 2 1185 16368 212 51 36 chr6 78674616 78678764 -70838273 - Lx2B LINE L1 -149 5737 1533 2 1185 1017 123 0 16 chr6 78678764 78678946 -70838091 + (TTC)n Simple_repeat Simple_repeat 1 179 0 2 1185 15519 212 28 38 chr6 78678946 78679759 -70837278 - Lx2B LINE L1 -4348 1532 920 2 1185 213 65 0 0 chr6 78680823 78680854 -70836183 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 2 1185 399 73 0 0 chr6 78682674 78682729 -70834308 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1185 518 343 21 0 chr6 78682738 78682881 -70834156 - B3A SINE B2 -49 149 4 2 1185 344 344 34 38 chr6 78683427 78683693 -70833344 + HAL1 LINE L1 95 359 -2148 2 1185 21 0 0 0 chr6 78684251 78684272 -70832765 + AT_rich Low_complexity Low_complexity 1 21 0 2 1185 227 73 49 0 chr6 78684276 78684317 -70832720 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 2 1185 2153 55 11 0 chr6 78684572 78684846 -70832191 + L1Md_F2 LINE L1 6306 6582 0 2 1185 457 276 60 5 chr6 78684922 78685044 -70831993 + B1F SINE Alu 1 119 -1 2 1185 351 296 101 20 chr6 78686155 78686303 -70830734 - Lx8 LINE L1 -405 7068 6909 2 1185 687 93 28 9 chr6 78686708 78686817 -70830220 - L1Md_F2 LINE L1 -576 6008 5898 2 1185 4822 43 2 0 chr6 78686817 78687390 -70829647 + L1Md_F2 LINE L1 5989 6562 -20 2 1185 468 0 0 0 chr6 78687390 78687442 -70829595 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1185 26 30 0 0 chr6 78687762 78687795 -70829242 + AT_rich Low_complexity Low_complexity 1 33 0 2 1185 570 330 80 27 chr6 78688105 78688329 -70828708 - B4A SINE B4 -46 246 11 2 1185 639 0 0 0 chr6 78688723 78688794 -70828243 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 2 1185 1460 171 61 61 chr6 78689041 78689451 -70827586 + RMER17C LTR ERVK 1 410 0 2 1185 432 0 0 0 chr6 78689532 78689580 -70827457 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1185 189 107 0 0 chr6 78690752 78690780 -70826257 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1185 216 0 0 0 chr6 78690862 78690886 -70826151 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1185 435 52 0 0 chr6 78691052 78691110 -70825927 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1185 617 217 13 101 chr6 78691117 78691276 -70825761 - B3A SINE B2 -50 148 4 2 1185 284 300 0 0 chr6 78692337 78692397 -70824640 + Lx8 LINE L1 6823 6882 -591 2 1185 1491 47 0 5 chr6 78692500 78692693 -70824344 + L1Md_F3 LINE L1 6391 6582 -2 2 1185 2788 190 26 35 chr6 78692844 78693417 -70823620 - RLTR20D LTR ERVK 0 568 1 2 1185 500 322 48 19 chr6 78694638 78694844 -70822193 + B3 SINE B2 5 216 0 2 1185 599 335 43 62 chr6 78695070 78695124 -70821913 - B3 SINE B2 -8 208 152 2 1185 735 100 0 0 chr6 78695124 78695234 -70821803 + (TG)n Simple_repeat Simple_repeat 2 111 0 2 1185 599 335 43 62 chr6 78695234 78695389 -70821648 - B3 SINE B2 -65 151 3 2 1185 3412 138 26 14 chr6 78695769 78696341 -70820696 - MT2B2 LTR ERVL -5 579 1 2 1185 821 263 22 6 chr6 78696581 78696761 -70820276 + B3 SINE B2 28 210 -6 2 1185 337 367 82 22 chr6 78696774 78696958 -70820079 + B4A SINE B4 82 276 -16 2 1185 27 81 0 0 chr6 78697054 78697116 -70819921 + AT_rich Low_complexity Low_complexity 1 62 0 2 1185 345 163 0 4 chr6 78697609 78697665 -70819372 + L1M6 LINE L1 1699 1748 -4748 2 1185 545 177 9 0 chr6 78699330 78699443 -70817594 + (TA)n Simple_repeat Simple_repeat 2 115 0 2 1185 1114 277 87 21 chr6 78699879 78700259 -70816778 + MTD LTR MaLR 1 405 -14 2 1185 258 161 0 61 chr6 78700456 78700522 -70816515 + A-rich Low_complexity Low_complexity 4 65 0 2 1185 301 319 43 6 chr6 78700535 78700699 -70816338 - HAL1b LINE L1 -826 1183 1014 2 1185 21 57 0 0 chr6 78700714 78700749 -70816288 + AT_rich Low_complexity Low_complexity 1 35 0 2 1185 352 366 102 58 chr6 78700985 78701191 -70815846 - B4A SINE B4 -75 217 3 2 1185 375 333 108 6 chr6 78701366 78701532 -70815505 + MTEb LTR MaLR 1 183 -196 2 1185 3670 57 2 0 chr6 78701532 78701987 -70815050 - L1Md_F2 LINE L1 -86 5797 5342 2 1185 4823 63 2 16 chr6 78701987 78702627 -70814410 + L1Md_F2 LINE L1 5951 6581 -1 2 1185 671 256 69 20 chr6 78702629 78702832 -70814205 + MTEb LTR MaLR 167 379 0 2 1185 307 292 134 67 chr6 78703133 78703386 -70813651 + Lx8 LINE L1 7048 7317 -156 2 1185 31 48 0 16 chr6 78704295 78704333 -70812704 + AT_rich Low_complexity Low_complexity 1 38 0 2 1185 817 239 28 14 chr6 78704333 78704545 -70812492 - B3 SINE B2 0 216 2 2 1185 31 48 0 16 chr6 78704545 78704569 -70812468 + AT_rich Low_complexity Low_complexity 1 24 0 2 1185 576 313 82 0 chr6 78704657 78704852 -70812185 - B3 SINE B2 -5 211 1 2 1185 637 248 45 15 chr6 78705870 78706071 -70810966 + B3 SINE B2 4 210 -6 2 1185 1514 255 54 3 chr6 78706303 78706657 -70810380 + ORR1D1 LTR MaLR 1 372 -2 2 1185 736 303 0 6 chr6 78707480 78707646 -70809391 + B3A SINE B2 4 168 -30 3 1185 268 367 124 14 chr6 78707646 78707690 -70809347 + B4A SINE B4 4 236 -56 3 1185 1055 254 9 0 chr6 78707692 78707905 -70809132 + B3 SINE B2 1 215 -1 3 1185 236 319 28 0 chr6 78707940 78708012 -70809025 + ID4_ SINE ID 2 75 -8 3 1185 21 0 0 0 chr6 78708155 78708176 -70808861 + AT_rich Low_complexity Low_complexity 1 21 0 3 1185 487 314 48 63 chr6 78708704 78708911 -70808126 - B3 SINE B2 -10 206 3 3 1185 258 318 61 43 chr6 78709624 78709739 -70807298 + MLT1H2 LTR MaLR 373 489 0 3 1185 735 303 71 85 chr6 78710257 78710480 -70806557 - ORR1E LTR MaLR 0 359 144 3 1185 270 0 0 0 chr6 78710480 78710510 -70806527 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1185 261 0 0 0 chr6 78710510 78710538 -70806499 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1185 735 303 71 85 chr6 78710538 78710677 -70806360 - ORR1E LTR MaLR -216 143 2 3 1185 630 0 0 0 chr6 78711005 78711075 -70805962 + (GAA)n Simple_repeat Simple_repeat 3 72 0 3 1185 22 70 0 0 chr6 78711323 78711366 -70805671 + AT_rich Low_complexity Low_complexity 1 43 0 3 1185 8149 45 2 2 chr6 78712026 78713022 -70804015 - L1Md_F2 LINE L1 0 6582 5587 3 1185 251 321 12 0 chr6 78713047 78713131 -70803906 + RSINE1 SINE B4 2 86 -79 3 1185 1028 101 14 0 chr6 78713056 78713204 -70803833 + B2_Mm2 SINE B2 11 160 -35 3 1185 435 38 0 0 chr6 78713245 78713298 -70803739 + (TATG)n Simple_repeat Simple_repeat 1 53 0 3 1185 352 355 76 28 chr6 78713312 78713540 -70803497 - B4A SINE B4 -26 266 27 3 1185 1035 309 23 73 chr6 78713540 78713938 -70803099 - MTE2b LTR MaLR 0 419 28 3 1185 266 293 34 0 chr6 78714625 78714719 -70802318 + B1F2 SINE Alu 8 109 -8 3 1185 28 0 0 0 chr6 78714806 78714834 -70802203 + AT_rich Low_complexity Low_complexity 1 28 0 3 1185 512 286 97 16 chr6 78715058 78715243 -70801794 + MER20 DNA MER1_type 2 201 -18 3 1185 1126 180 14 22 chr6 78715298 78715520 -70801517 - Lx4B LINE L1 -8 7050 6831 3 1185 226 231 0 0 chr6 78716189 78716228 -70800809 - Lx5 LINE L1 -251 6799 6761 3 1185 288 0 0 0 chr6 78716447 78716479 -70800558 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1185 970 274 35 82 chr6 78716508 78716850 -70800187 - ORR1E LTR MaLR 0 359 34 3 1185 1146 322 24 8 chr6 78717655 78718031 -70799006 - MLT2B5 LTR ERVL -335 382 1 3 1185 385 298 119 33 chr6 78718432 78718734 -70798303 + L1M5 LINE L1 4390 4717 -1429 3 1185 445 328 0 0 chr6 78719733 78719867 -70797170 + B1_Mur1 SINE Alu 10 143 -6 3 1185 817 333 53 19 chr6 78719893 78720159 -70796878 + B4A SINE B4 6 280 -12 3 1185 420 20 0 0 chr6 78720186 78720235 -70796802 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1185 184 333 11 22 chr6 78720714 78720806 -70796231 + L2 LINE L2 2505 2595 -824 3 1185 440 230 30 0 chr6 78721912 78722012 -70795025 - PB1D9 SINE Alu -8 112 10 3 1185 293 372 94 50 chr6 78722019 78722220 -70794817 - B4A SINE B4 -59 233 24 3 1185 329 331 23 45 chr6 78722233 78722366 -70794671 + ID_B1 SINE B4 82 211 -13 3 1185 249 226 38 0 chr6 78722516 78722569 -70794468 + (ATGGTG)n Simple_repeat Simple_repeat 4 58 0 3 1185 3053 234 65 9 chr6 78722569 78723325 -70793712 + Lx9 LINE L1 6372 7169 -475 3 1185 645 221 13 0 chr6 78723323 78723477 -70793560 + Lx9 LINE L1 7361 7516 -128 3 1185 637 322 20 0 chr6 78723612 78723764 -70793273 - RSINE1 SINE B4 0 165 11 3 1185 2099 97 13 3 chr6 78724345 78724645 -70792392 + RLTR13D5 LTR ERVK 721 1023 0 3 1185 295 345 27 7 chr6 78725108 78725254 -70791783 + B1F SINE Alu 1 149 0 3 1185 3195 189 79 40 chr6 78725407 78726208 -70790829 - MYSERV6-int LTR ERVK -1710 7249 6418 3 1185 21 36 0 0 chr6 78726215 78726243 -70790794 + AT_rich Low_complexity Low_complexity 1 28 0 3 1185 1254 188 64 29 chr6 78726243 78726556 -70790481 - MYSERV6-int LTR ERVK -4250 4709 4386 3 1185 7252 173 87 54 chr6 78726544 78727116 -70789921 - MYSERV6-int LTR ERVK -6885 2074 1455 3 1185 180 225 171 24 chr6 78727116 78727198 -70789839 - L3 LINE CR1 -662 3827 3734 3 1185 7252 173 87 54 chr6 78727198 78728209 -70788828 - MYSERV6-int LTR ERVK -6885 1454 356 3 1185 789 147 6 49 chr6 78728277 78728441 -70788596 - L1Md_F2 LINE L1 -2 6580 6424 3 1185 7870 44 3 1 chr6 78728441 78729409 -70787628 + L1_Mm LINE L1 4623 5592 -291 3 1185 932 41 5 16 chr6 78729400 78729525 -70787512 + L1_Mm LINE L1 5267 5413 -887 3 1185 7943 53 1 2 chr6 78729525 78730522 -70786515 + L1Md_F2 LINE L1 5587 6582 0 3 1185 321 250 126 19 chr6 78730522 78730555 -70786482 + L1_Mm LINE L1 5414 5465 -835 3 1185 281 68 23 0 chr6 78730606 78730650 -70786387 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 3 1185 1083 106 41 0 chr6 78730690 78730860 -70786177 + RLTR30 LTR ERV1 202 378 -1 3 1185 205 277 11 88 chr6 78730875 78730966 -70786071 + MIRm SINE MIR 117 200 -76 3 1185 274 336 27 9 chr6 78730970 78731081 -70785956 + Lx9 LINE L1 7064 7176 -468 3 1185 21 57 0 0 chr6 78731795 78731830 -70785207 + AT_rich Low_complexity Low_complexity 1 35 0 3 1185 416 221 34 17 chr6 78731843 78732018 -70785019 + (TATAA)n Simple_repeat Simple_repeat 1 178 0 3 1185 225 198 16 32 chr6 78732023 78732148 -70784889 + (TA)n Simple_repeat Simple_repeat 1 123 0 3 1185 21 0 0 0 chr6 78732626 78732647 -70784390 + AT_rich Low_complexity Low_complexity 1 21 0 3 1185 365 365 31 25 chr6 78732783 78732922 -70784115 + RSINE1 SINE B4 4 142 -23 3 1185 378 115 0 0 chr6 78732922 78732983 -70784054 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1185 365 365 31 25 chr6 78732983 78733003 -70784034 + RSINE1 SINE B4 143 163 -2 3 1185 3835 175 11 42 chr6 78733462 78734251 -70782786 - L1_Mur2 LINE L1 -134 5743 4979 3 1185 261 0 0 0 chr6 78734296 78734325 -70782712 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1185 200 219 0 0 chr6 78734333 78734374 -70782663 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 1185 203 283 54 11 chr6 78734809 78734902 -70782135 - L2 LINE L2 -739 2680 2584 3 1185 205 219 13 27 chr6 78735100 78735175 -70781862 + A-rich Low_complexity Low_complexity 2 75 0 3 1185 238 284 73 22 chr6 78735357 78735494 -70781543 + MER67D LTR ERV1 47 190 -324 3 1185 571 365 71 32 chr6 78735907 78736187 -70780850 + B4A SINE B4 2 292 0 3 1185 1406 176 111 57 chr6 78736187 78736548 -70780489 - RLTR31B_Mm LTR ERVK 0 561 88 3 1185 318 115 0 0 chr6 78736548 78736609 -70780428 + (TCTG)n Simple_repeat Simple_repeat 4 64 0 3 1185 1406 164 108 55 chr6 78736609 78736695 -70780342 - RLTR31B_Mm LTR ERVK -470 87 2 3 1185 306 219 0 146 chr6 78737652 78737748 -70779289 - MTC LTR MaLR -10 411 330 3 1185 334 276 133 0 chr6 78738456 78738554 -70778483 + PB1D7 SINE Alu 10 120 0 3 1185 201 265 0 0 chr6 78739384 78739467 -70777570 + A-rich Low_complexity Low_complexity 1 83 0 3 1185 1180 48 14 0 chr6 78740685 78740831 -70776206 + B1_Mus1 SINE Alu 1 148 0 3 1185 216 321 12 12 chr6 78741642 78741724 -70775313 + CT-rich Low_complexity Low_complexity 5 86 0 3 1185 192 152 0 0 chr6 78742019 78742052 -70774985 + T-rich Low_complexity Low_complexity 1 33 0 3 1185 1674 179 21 92 chr6 78742383 78742764 -70774273 + ORR1B1 LTR MaLR 41 394 0 3 1185 297 0 0 0 chr6 78742929 78742962 -70774075 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1185 225 313 80 10 chr6 78743567 78743667 -70773370 - B4A SINE B4 -35 257 151 3 1185 22 0 0 0 chr6 78743681 78743703 -70773334 + AT_rich Low_complexity Low_complexity 1 22 0 3 1185 289 270 42 63 chr6 78743706 78743801 -70773236 + MER67D LTR ERV1 197 289 -225 3 1185 610 301 57 14 chr6 78743853 78744065 -70772972 + ID_B1 SINE B4 1 221 -3 3 1185 388 282 102 26 chr6 78744230 78744456 -70772581 - L1MC4 LINE L1 -235 7807 7565 3 1185 228 295 0 13 chr6 78744597 78744676 -70772361 + Lx8 LINE L1 7013 7090 -383 3 1185 183 42 0 0 chr6 78744802 78744826 -70772211 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1185 1068 60 0 0 chr6 78744826 78744960 -70772077 - B1_Mm SINE Alu -13 134 1 3 1185 251 329 162 52 chr6 78744961 78745115 -70771922 + B3 SINE B2 16 186 -30 3 1185 27 0 0 0 chr6 78745115 78745142 -70771895 + AT_rich Low_complexity Low_complexity 1 27 0 3 1185 306 332 150 21 chr6 78745145 78745431 -70771606 + Lx8 LINE L1 7146 7468 -5 3 1185 23 33 0 0 chr6 78745433 78745463 -70771574 + AT_rich Low_complexity Low_complexity 1 30 0 3 1185 285 370 51 0 chr6 78746636 78746774 -70770263 + Lx8 LINE L1 6879 7023 -450 3 1185 425 364 80 43 chr6 78746837 78747187 -70769850 + MT2A LTR ERVL 1 363 -170 3 1185 321 286 110 0 chr6 78748101 78748192 -70768845 + RSINE1 SINE B4 2 102 -63 3 1185 562 354 43 87 chr6 78748661 78748961 -70768076 + B4A SINE B4 6 292 0 3 1185 477 215 14 7 chr6 78748962 78749107 -70767930 + (CA)n Simple_repeat Simple_repeat 2 147 0 3 1185 24 53 0 0 chr6 78751198 78751236 -70765801 + AT_rich Low_complexity Low_complexity 1 38 0 3 1185 201 99 65 78 chr6 78751333 78751410 -70765627 + A-rich Low_complexity Low_complexity 2 77 0 3 1185 279 314 19 9 chr6 78751461 78751567 -70765470 - Lx7 LINE L1 -400 7296 7190 3 1185 1717 281 64 8 chr6 78751633 78752118 -70764919 - Lx6 LINE L1 -161 7299 6788 3 1185 610 147 21 0 chr6 78752118 78752213 -70764824 - Lx6 LINE L1 -789 6671 6575 3 1185 314 328 99 11 chr6 78752236 78752418 -70764619 - B3A SINE B2 0 198 1 3 1185 1631 223 131 71 chr6 78753124 78753775 -70763262 - RMER6C LTR ERVK 0 690 1 3 1185 551 367 5 5 chr6 78753781 78753992 -70763045 + MER2 DNA MER2_type 130 340 -5 3 1185 291 345 0 0 chr6 78754318 78754405 -70762632 + PB1D10 SINE Alu 10 96 -21 3 1185 396 0 0 0 chr6 78754635 78754679 -70762358 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 1185 1391 226 72 11 chr6 78754680 78755056 -70761981 + Lx6 LINE L1 7052 7450 -10 3 1185 862 248 137 18 chr6 78755687 78756016 -70761021 + ORR1D1 LTR MaLR 3 370 -4 3 1185 24 77 0 0 chr6 78757751 78757803 -70759234 + AT_rich Low_complexity Low_complexity 1 52 0 4 1185 231 323 43 107 chr6 78758418 78758605 -70758432 + B4A SINE B4 3 177 -115 4 1185 241 352 34 0 chr6 78758721 78758809 -70758228 + MTE2a LTR MaLR 242 332 -47 4 1185 545 323 101 30 chr6 78758791 78759059 -70757978 - MTE2b LTR MaLR -92 287 1 4 1185 22 0 0 0 chr6 78759090 78759112 -70757925 + AT_rich Low_complexity Low_complexity 1 22 0 4 1185 277 318 122 0 chr6 78759299 78759406 -70757631 + RSINE1 SINE B4 10 129 -36 4 1185 582 136 23 0 chr6 78759420 78759552 -70757485 + CT-rich Low_complexity Low_complexity 2 136 0 4 1185 22 0 0 0 chr6 78759592 78759614 -70757423 + AT_rich Low_complexity Low_complexity 1 22 0 4 1185 510 91 0 0 chr6 78759645 78759722 -70757315 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1185 217 281 18 0 chr6 78759745 78759802 -70757235 - RSINE1 SINE B4 -38 127 70 4 1185 240 184 0 0 chr6 78759827 78759876 -70757161 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1185 1049 223 83 0 chr6 78759879 78760146 -70756891 - Lx9 LINE L1 -8 7636 7344 4 1185 423 0 0 0 chr6 78760146 78760193 -70756844 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1185 1049 223 83 0 chr6 78760193 78760239 -70756798 - Lx9 LINE L1 -301 7343 7298 4 1185 273 29 0 0 chr6 78760435 78760469 -70756568 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1185 231 146 0 0 chr6 78760989 78761030 -70756007 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1185 411 112 38 0 chr6 78761514 78761594 -70755443 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 4 1185 249 108 0 0 chr6 78761636 78761673 -70755364 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 4 1185 486 317 64 10 chr6 78761686 78761890 -70755147 - ID_B1 SINE B4 -9 215 1 4 1185 672 323 15 0 chr6 78762309 78762504 -70754533 + B3 SINE B2 2 199 -17 4 1185 544 329 43 14 chr6 78762547 78762757 -70754280 + B4A SINE B4 14 229 -63 4 1185 475 292 136 75 chr6 78762903 78763373 -70753664 + RMER20B LTR ERVK 129 627 0 4 1185 243 272 55 55 chr6 78763373 78763460 -70753577 - RMER12 LTR ERVK -486 836 750 4 1185 22 0 0 0 chr6 78763469 78763491 -70753546 + AT_rich Low_complexity Low_complexity 1 22 0 4 1185 2743 169 10 18 chr6 78763492 78763985 -70753052 - Lx4A LINE L1 -1 7057 6569 4 1185 8978 124 10 7 chr6 78765134 78766637 -70750400 - L1_Mus3 LINE L1 -709 5929 4425 4 1185 4586 108 4 13 chr6 78766638 78767352 -70749685 + L1_Mus3 LINE L1 5947 6638 0 4 1185 389 138 0 12 chr6 78767596 78767677 -70749360 + (TA)n Simple_repeat Simple_repeat 1 80 0 4 1185 341 347 27 20 chr6 78768155 78768305 -70748732 - B3 SINE B2 0 216 66 4 1185 6681 79 18 7 chr6 78768305 78769212 -70747825 + L1_Mus2 LINE L1 5650 6566 0 4 1185 2402 162 37 5 chr6 78769212 78769621 -70747416 - RLTR25B LTR ERVK -601 427 6 4 1185 427 325 34 24 chr6 78769637 78769842 -70747195 + B3 SINE B2 4 210 -6 4 1185 202 143 51 13 chr6 78770107 78770185 -70746852 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1185 663 338 40 7 chr6 78770243 78770520 -70746517 - B4A SINE B4 -6 286 1 4 1185 241 104 25 38 chr6 78770649 78770729 -70746308 + T-rich Low_complexity Low_complexity 2 80 0 4 1185 992 65 65 0 chr6 78770732 78770871 -70746166 - B1_Mus1 SINE Alu 0 148 1 4 1185 2177 219 8 176 chr6 78770875 78771595 -70745442 - RMER19C LTR ERVK -12 599 1 4 1185 23 0 0 0 chr6 78771786 78771809 -70745228 + AT_rich Low_complexity Low_complexity 1 23 0 4 1185 306 358 4 173 chr6 78772003 78772246 -70744791 - MTEa LTR MaLR -168 211 10 4 1185 497 286 219 0 chr6 78772646 78772988 -70744049 - L1M4 LINE L1 -2116 4030 3614 4 1185 386 389 19 6 chr6 78773111 78773269 -70743768 - RSINE1 SINE B4 -2 163 4 4 1185 714 284 106 76 chr6 78773723 78774184 -70742853 - RLTR12B LTR ERVK -43 485 11 4 1186 297 0 0 0 chr6 78774567 78774600 -70742437 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1186 345 287 21 31 chr6 78774631 78774728 -70742309 - B3A SINE B2 -67 131 36 4 1186 496 201 33 33 chr6 78774747 78774927 -70742110 - RMER17C LTR ERVK -138 272 93 4 1186 21 0 0 0 chr6 78774931 78774952 -70742085 + AT_rich Low_complexity Low_complexity 1 21 0 4 1186 269 250 0 0 chr6 78774953 78775021 -70742016 - Lx7 LINE L1 -15 7681 7614 4 1186 527 240 71 76 chr6 78776316 78776514 -70740523 - B3A SINE B2 -1 197 1 4 1186 378 335 53 80 chr6 78776670 78776969 -70740068 + B4 SINE B4 2 292 0 4 1186 241 250 0 0 chr6 78777580 78777644 -70739393 + MLT2B4 LTR ERVL 8 71 -485 4 1186 1332 259 18 15 chr6 78778179 78778520 -70738517 - RMER5 LTR ERV1 -192 342 1 4 1186 397 296 80 0 chr6 78778788 78778913 -70738124 - B1F SINE Alu -8 141 7 4 1186 859 85 23 0 chr6 78778953 78779083 -70737954 - L1_Mus1 LINE L1 0 6567 6435 4 1186 985 57 0 0 chr6 78779083 78779207 -70737830 + L1Md_F2 LINE L1 5696 5819 -763 4 1186 451 218 5 15 chr6 78779462 78779567 -70737470 + ORR1B2 LTR MaLR 267 372 -12 4 1186 328 218 68 11 chr6 78780384 78780472 -70736565 - ORR1D1 LTR MaLR -4 366 274 4 1186 337 286 28 9 chr6 78780554 78780660 -70736377 - ORR1D1 LTR MaLR -260 114 7 4 1186 272 209 139 12 chr6 78780698 78780863 -70736174 - Lx9 LINE L1 -25 7619 7434 4 1186 1351 214 140 3 chr6 78780864 78781192 -70735845 + Lx9 LINE L1 6841 7213 -431 4 1186 552 30 0 0 chr6 78781213 78781279 -70735758 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1186 226 345 15 121 chr6 78781541 78781673 -70735364 + ORR1E LTR MaLR 11 128 -231 4 1186 219 185 37 0 chr6 78781770 78781824 -70735213 + CT-rich Low_complexity Low_complexity 1 56 0 4 1186 572 218 0 6 chr6 78781843 78782023 -70735014 + CT-rich Low_complexity Low_complexity 2 180 0 4 1186 222 250 83 0 chr6 78782028 78782088 -70734949 - PB1D9 SINE Alu -5 115 51 4 1186 249 261 15 0 chr6 78782130 78782195 -70734842 + ORR1B2 LTR MaLR 312 377 -2 4 1186 413 120 0 12 chr6 78782470 78782554 -70734483 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 4 1186 1243 92 6 6 chr6 78782554 78782728 -70734309 - B2_Mm1a SINE B2 -18 175 2 4 1186 594 315 42 37 chr6 78782732 78782923 -70734114 - B3A SINE B2 -3 195 4 4 1186 875 294 87 36 chr6 78783331 78783666 -70733371 + MTEa LTR MaLR 11 362 -17 4 1186 1499 266 13 2 chr6 78783736 78784180 -70732857 + RNERVK23-int LTR ERVK 5192 5536 -2681 4 1186 275 104 21 0 chr6 78784186 78784234 -70732803 + (GGGAGA)n Simple_repeat Simple_repeat 3 51 0 4 1186 819 268 4 30 chr6 78784248 78784278 -70732759 + RNERVK23-int LTR ERVK 7587 7613 -604 4 1186 711 0 0 0 chr6 78784278 78784357 -70732680 + (GAGAA)n Simple_repeat Simple_repeat 1 79 0 4 1186 819 268 4 30 chr6 78784357 78784561 -70732476 + RNERVK23-int LTR ERVK 7614 7815 -402 4 1186 302 247 9 93 chr6 78784708 78784815 -70732222 + ETnERV2-int LTR ERVK 6750 6847 -559 4 1186 383 279 36 54 chr6 78785294 78785461 -70731576 + RNLTR23 LTR ERVK 479 642 0 4 1186 1352 251 45 8 chr6 78786716 78787117 -70729920 - MTD LTR MaLR 0 419 4 4 1186 22 0 0 0 chr6 78787146 78787168 -70729869 + AT_rich Low_complexity Low_complexity 1 22 0 4 1186 371 327 17 80 chr6 78787386 78787562 -70729475 - B3A SINE B2 -15 183 19 4 1186 22 35 0 0 chr6 78787802 78787831 -70729206 + AT_rich Low_complexity Low_complexity 1 29 0 4 1186 605 292 27 33 chr6 78788312 78788496 -70728541 + B3A SINE B2 1 183 -15 4 1186 247 238 76 185 chr6 78788665 78788792 -70728245 - B2_Mm1a SINE B2 -3 190 88 4 1186 3395 165 72 27 chr6 78788792 78789454 -70727583 - RLTR17 LTR ERVK 0 692 1 4 1186 247 238 76 185 chr6 78789454 78789537 -70727500 - B2_Mm1a SINE B2 -106 87 3 4 1186 213 130 35 53 chr6 78789540 78789574 -70727463 + T-rich Low_complexity Low_complexity 22 56 0 4 1186 186 43 0 0 chr6 78789574 78789597 -70727440 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1186 1174 56 0 0 chr6 78789602 78789745 -70727292 - B1_Mus1 SINE Alu -5 143 1 4 1186 213 130 35 53 chr6 78789745 78789761 -70727276 + T-rich Low_complexity Low_complexity 1 16 0 4 1186 275 315 14 0 chr6 78789940 78790013 -70727024 - ID4_ SINE ID 0 83 10 4 1186 25 0 0 0 chr6 78790067 78790092 -70726945 + AT_rich Low_complexity Low_complexity 1 25 0 4 1186 393 341 54 21 chr6 78791169 78791355 -70725682 - B3A SINE B2 -6 192 1 4 1186 1982 101 185 60 chr6 78791375 78791775 -70725262 + RLTR11B LTR ERVK 4 453 0 4 1186 394 299 9 18 chr6 78791967 78792076 -70724961 + RSINE1 SINE B4 43 150 -15 4 1186 247 305 66 60 chr6 78792192 78792527 -70724510 - L1M4 LINE L1 -837 5309 4973 4 1186 26 30 0 0 chr6 78792768 78792801 -70724236 + AT_rich Low_complexity Low_complexity 1 33 0 4 1186 25 90 0 0 chr6 78793322 78793389 -70723648 + AT_rich Low_complexity Low_complexity 1 67 0 4 1186 1741 246 18 7 chr6 78794051 78794494 -70722543 - Lx4B LINE L1 -780 6278 5831 4 1186 633 244 116 11 chr6 78794493 78794723 -70722314 + Lx4B LINE L1 6727 7050 -8 4 1186 225 310 17 34 chr6 78795015 78795132 -70721905 - L1MA7 LINE L1 -24 6267 6153 4 1186 365 307 403 26 chr6 78795168 78795500 -70721537 + Lx8 LINE L1 7015 7471 -2 4 1186 22 0 0 0 chr6 78795765 78795787 -70721250 + AT_rich Low_complexity Low_complexity 1 22 0 4 1186 438 20 0 0 chr6 78795973 78796024 -70721013 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1186 459 0 0 0 chr6 78796024 78796074 -70720963 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1186 330 366 19 19 chr6 78796077 78796233 -70720804 - B3A SINE B2 -41 157 2 4 1186 354 293 88 54 chr6 78797208 78797226 -70719811 - RSINE1 SINE B4 -3 162 145 4 1186 411 21 0 0 chr6 78797226 78797274 -70719763 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1186 354 293 88 54 chr6 78797274 78797403 -70719634 - RSINE1 SINE B4 -21 144 11 4 1186 244 229 70 14 chr6 78797548 78797619 -70719418 - B4 SINE B4 -217 75 1 4 1186 8894 30 1 0 chr6 78798491 78800207 -70716830 - L1Md_T LINE L1 0 6582 4867 4 1186 212 271 0 0 chr6 78802902 78802961 -70714076 + (TTA)n Simple_repeat Simple_repeat 2 60 0 4 1186 233 287 0 11 chr6 78803916 78804011 -70713026 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 1186 342 351 114 8 chr6 78804011 78804143 -70712894 - B1F SINE Alu -1 148 3 5 1186 6093 245 47 35 chr6 78804234 78807060 -70709977 + Lx6 LINE L1 4589 7456 -4 5 1186 27 73 0 0 chr6 78807106 78807161 -70709876 + AT_rich Low_complexity Low_complexity 1 55 0 5 1186 26 0 0 0 chr6 78807184 78807210 -70709827 + AT_rich Low_complexity Low_complexity 1 26 0 5 1186 455 364 32 7 chr6 78807442 78807597 -70709440 + B3A SINE B2 4 162 -36 5 1186 689 289 15 15 chr6 78808133 78808337 -70708700 + B3 SINE B2 3 206 -10 5 1186 41 87 0 0 chr6 78808772 78808876 -70708161 + AT_rich Low_complexity Low_complexity 1 104 0 5 1186 22 0 0 0 chr6 78808884 78808906 -70708131 + AT_rich Low_complexity Low_complexity 1 22 0 5 1186 657 25 0 0 chr6 78809561 78809640 -70707397 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1186 463 288 10 78 chr6 78809735 78809927 -70707110 - B3A SINE B2 -17 181 3 5 1186 22 0 0 0 chr6 78809992 78810014 -70707023 + AT_rich Low_complexity Low_complexity 1 22 0 5 1186 1561 224 63 26 chr6 78810354 78810780 -70706257 - RLTR11A LTR ERVK -77 451 1 5 1186 507 315 23 77 chr6 78810868 78811088 -70705949 - B4 SINE B4 0 292 85 5 1186 620 302 37 51 chr6 78811687 78811903 -70705134 + B3A SINE B2 4 216 0 5 1186 225 178 0 0 chr6 78812435 78812480 -70704557 + CT-rich Low_complexity Low_complexity 2 46 0 5 1186 643 184 61 40 chr6 78812480 78812678 -70704359 - L1_Mur3 LINE L1 -3683 2197 1996 5 1186 387 0 0 0 chr6 78813713 78813756 -70703281 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1186 252 77 0 0 chr6 78813759 78813798 -70703239 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1186 256 377 67 37 chr6 78813926 78814061 -70702976 - B4A SINE B4 -153 139 1 5 1186 202 246 0 16 chr6 78814095 78814157 -70702880 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 5 1186 236 254 0 17 chr6 78814236 78814296 -70702741 - MLT1A LTR MaLR -16 358 300 5 1186 343 249 145 15 chr6 78814791 78814991 -70702046 + L1MA8 LINE L1 6044 6269 -22 5 1186 23 33 0 0 chr6 78814994 78815024 -70702013 + AT_rich Low_complexity Low_complexity 1 30 0 5 1186 333 47 0 0 chr6 78815157 78815200 -70701837 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1186 444 118 0 0 chr6 78815222 78815290 -70701747 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1186 232 275 102 71 chr6 78816177 78816275 -70700762 - PB1D7 SINE Alu -10 110 10 5 1186 2433 215 26 35 chr6 78816455 78817020 -70700017 + RLTR20B1 LTR ERVK 3 562 -1 5 1186 360 241 51 7 chr6 78817029 78817167 -70699870 + (TATATG)n Simple_repeat Simple_repeat 4 147 0 5 1186 193 303 56 11 chr6 78817540 78817630 -70699407 - L2 LINE L2 -700 2719 2626 5 1186 279 146 0 0 chr6 78818770 78818825 -70698212 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1186 189 107 0 0 chr6 78819427 78819455 -70697582 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 5 1186 3191 51 7 2 chr6 78821440 78821850 -70695187 - L1Md_F3 LINE L1 0 6584 6173 5 1186 498 288 8 8 chr6 78822005 78822131 -70694906 + B3A SINE B2 2 127 -71 5 1186 244 206 0 128 chr6 78822257 78822335 -70694702 - PB1D10 SINE Alu -1 116 49 5 1186 609 73 0 40 chr6 78822498 78822598 -70694439 + L1_Mus2 LINE L1 6471 6566 0 5 1186 954 254 29 5 chr6 78822775 78822985 -70694052 - ID_B1 SINE B4 0 224 10 5 1186 414 73 44 0 chr6 78823468 78823536 -70693501 + L1Md_F2 LINE L1 6510 6580 -2 5 1186 3531 111 24 2 chr6 78823533 78824074 -70692963 + Lx3_Mus LINE L1 6455 7007 -2 5 1186 21 36 0 0 chr6 78824195 78824223 -70692814 + AT_rich Low_complexity Low_complexity 1 28 0 5 1186 909 186 25 118 chr6 78824374 78824612 -70692425 + ORR1B1 LTR MaLR 126 341 -53 5 1186 27 29 0 0 chr6 78825627 78825661 -70691376 + AT_rich Low_complexity Low_complexity 1 34 0 5 1186 2420 62 9 0 chr6 78825778 78826124 -70690913 - L1_Mus1 LINE L1 0 6567 6239 5 1186 1822 77 0 0 chr6 78826124 78826357 -70690680 + L1_Mus1 LINE L1 5990 6222 -345 5 1186 37905 30 0 0 chr6 78826364 78832760 -70684277 - L1Md_T LINE L1 0 6585 126 5 1186 587 335 26 16 chr6 78833144 78833338 -70683699 - ID_B1 SINE B4 -20 204 9 5 1186 792 96 0 0 chr6 78833601 78833716 -70683321 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 5 1186 246 363 55 0 chr6 78833737 78833828 -70683209 - B1F1 SINE Alu -53 96 1 5 1186 243 0 0 0 chr6 78834124 78834151 -70682886 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 5 1186 318 98 0 0 chr6 78834283 78834334 -70682703 + (TATG)n Simple_repeat Simple_repeat 2 52 0 5 1186 250 173 132 13 chr6 78834533 78834609 -70682428 - Lx8 LINE L1 -5 7468 7384 5 1186 423 0 0 0 chr6 78834792 78834839 -70682198 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1186 271 252 147 49 chr6 78834862 78835025 -70682012 + L3 LINE CR1 4131 4309 -180 5 1186 508 260 48 21 chr6 78835967 78836122 -70680915 - MLT2B1 LTR ERVL 0 567 414 5 1186 429 20 0 0 chr6 78836136 78836186 -70680851 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1186 253 171 0 0 chr6 78836390 78836431 -70680606 + MTE2a LTR MaLR 1 41 -338 5 1186 610 342 69 44 chr6 78836587 78836994 -70680043 - MTD LTR MaLR -2 417 1 5 1186 444 314 76 30 chr6 78839860 78840057 -70676980 + B3A SINE B2 10 215 -1 5 1186 3100 68 2 5 chr6 78840243 78840654 -70676383 + L1Md_F2 LINE L1 5176 5585 -298 5 1186 7568 63 6 11 chr6 78840655 78841652 -70675385 + L1Md_F2 LINE L1 5587 6578 -4 5 1186 336 331 88 20 chr6 78841716 78841864 -70675173 - B3A SINE B2 -35 160 3 5 1186 180 0 0 0 chr6 78843130 78843150 -70673887 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1186 2086 203 29 15 chr6 78843693 78844148 -70672889 + RMER6B LTR ERVK 1 461 0 5 1186 477 299 25 65 chr6 78844625 78844825 -70672212 - B3A SINE B2 -3 195 4 5 1186 706 303 29 58 chr6 78845778 78846020 -70671017 + B4A SINE B4 57 291 -1 5 1186 329 381 79 23 chr6 78846357 78846572 -70670465 - L4 LINE RTE -1300 729 503 5 1186 237 312 0 0 chr6 78846645 78846709 -70670328 + B3A SINE B2 1 64 -134 5 1186 189 0 0 0 chr6 78846807 78846828 -70670209 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1186 310 219 23 68 chr6 78847582 78847670 -70669367 + B4 SINE B4 2 85 -207 5 1186 520 195 0 13 chr6 78847894 78848050 -70668987 + (CA)n Simple_repeat Simple_repeat 1 154 0 5 1186 265 395 23 15 chr6 78849187 78849318 -70667719 + B3A SINE B2 12 143 -55 5 1186 379 52 17 17 chr6 78849337 78849396 -70667641 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1186 2238 208 31 17 chr6 78849512 78849992 -70667045 + RMER15 LTR ERVL 84 570 -5 5 1186 499 322 39 39 chr6 78850082 78850260 -70666777 - B3A SINE B2 -8 190 13 5 1186 239 354 22 86 chr6 78850855 78850994 -70666043 - B3A SINE B2 -4 194 65 5 1186 1379 149 77 40 chr6 78850977 78851249 -70665788 + ORR1B1 LTR MaLR 47 328 -66 5 1186 1919 81 0 11 chr6 78851254 78851516 -70665521 + L1Md_F2 LINE L1 6312 6570 -12 5 1186 255 86 0 0 chr6 78851587 78851622 -70665415 + ORR1B1 LTR MaLR 324 358 -20 5 1186 551 279 32 54 chr6 78852011 78852288 -70664749 + L1MC4a LINE L1 6994 7264 -618 5 1186 1150 87 0 28 chr6 78852357 78852534 -70664503 + L1Md_F2 LINE L1 6399 6570 -12 5 1186 198 0 0 0 chr6 78852997 78853019 -70664018 + (TAA)n Simple_repeat Simple_repeat 3 24 0 5 1186 816 290 87 80 chr6 78853230 78853642 -70663395 + MTD LTR MaLR 5 419 0 5 1186 292 340 67 29 chr6 78854009 78854248 -70662789 - Charlie7 DNA MER1_type -902 1710 1463 5 1186 210 71 0 0 chr6 78854437 78854465 -70662572 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1186 187 114 22 22 chr6 78854472 78854517 -70662520 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1186 244 265 0 14 chr6 78854627 78854686 -70662351 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1186 489 34 0 0 chr6 78854686 78854745 -70662292 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1186 244 265 0 14 chr6 78854745 78854754 -70662283 + (TA)n Simple_repeat Simple_repeat 1 9 0 5 1186 819 21 0 0 chr6 78855033 78855130 -70661907 + (TG)n Simple_repeat Simple_repeat 1 97 0 5 1186 327 292 158 25 chr6 78855483 78855641 -70661396 - B3A SINE B2 -17 181 3 5 1186 431 279 127 90 chr6 78855900 78856168 -70660869 - B4A SINE B4 -10 282 5 5 1186 241 339 120 17 chr6 78856847 78856964 -70660073 - B4A SINE B4 0 292 164 5 1186 262 271 62 41 chr6 78856991 78857090 -70659947 - B4A SINE B4 -64 101 2 5 1186 202 333 41 41 chr6 78857892 78857989 -70659048 - L3b LINE CR1 -383 99 3 5 1186 262 302 141 28 chr6 78858368 78858545 -70658492 - Lx8 LINE L1 -2 7471 7275 5 1186 596 337 10 5 chr6 78858680 78858886 -70658151 - Lx8 LINE L1 -237 7236 7030 5 1186 22 0 0 0 chr6 78859011 78859033 -70658004 + AT_rich Low_complexity Low_complexity 1 22 0 5 1186 5041 131 60 19 chr6 78859613 78860475 -70656562 + Lx2 LINE L1 6098 6995 -2 5 1186 279 133 0 0 chr6 78860475 78860520 -70656517 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 5 1186 30 59 0 0 chr6 78860740 78860791 -70656246 + AT_rich Low_complexity Low_complexity 1 51 0 5 1186 973 195 0 0 chr6 78861160 78861324 -70655713 + U1 snRNA snRNA 1 164 -1 5 1186 1101 113 0 0 chr6 78861324 78861492 -70655545 + (GAAA)n Simple_repeat Simple_repeat 3 170 0 5 1186 219 36 0 0 chr6 78861784 78861812 -70655225 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1186 243 125 0 0 chr6 78861851 78861891 -70655146 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 5 1186 354 23 0 0 chr6 78863236 78863279 -70653758 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1186 1004 102 0 0 chr6 78863279 78863416 -70653621 - B1_Mus1 SINE Alu -10 138 2 6 1186 2287 93 6 42 chr6 78864106 78864443 -70652594 + ORR1A2 LTR MaLR 3 327 0 6 1186 387 340 83 0 chr6 78864456 78864612 -70652425 - Lx8 LINE L1 -248 7225 7057 6 1186 257 245 0 0 chr6 78864611 78864664 -70652373 - Lx8 LINE L1 -550 6923 6871 6 1186 1312 220 27 18 chr6 78864713 78865047 -70651990 + L1_Mur3 LINE L1 1725 2061 -3819 6 1186 1026 100 0 0 chr6 78865081 78865261 -70651776 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1186 225 282 73 55 chr6 78865299 78865517 -70651520 - L1MEd LINE L1 -5296 823 602 6 1186 2096 127 14 17 chr6 78866184 78866528 -70650509 + Lx3A LINE L1 6626 6968 -13 6 1186 288 77 0 0 chr6 78866528 78866567 -70650470 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1186 23 33 0 0 chr6 78867298 78867328 -70649709 + AT_rich Low_complexity Low_complexity 1 30 0 6 1186 479 339 72 6 chr6 78867443 78867609 -70649428 + ID_B1 SINE B4 3 179 -45 6 1186 2433 141 13 100 chr6 78867624 78868153 -70648884 + Lx2 LINE L1 6514 6996 -1 6 1186 380 98 0 0 chr6 78868183 78868234 -70648803 - L1_Mur2 LINE L1 -649 5228 5178 6 1186 358 86 0 0 chr6 78868236 78868294 -70648743 + Lx2 LINE L1 6938 6995 -2 6 1186 932 306 66 23 chr6 78868402 78868794 -70648243 - RMER15 LTR ERVL -1 574 166 6 1186 22 56 0 0 chr6 78869036 78869072 -70647965 + AT_rich Low_complexity Low_complexity 1 36 0 6 1186 35 41 0 0 chr6 78869831 78869880 -70647157 + AT_rich Low_complexity Low_complexity 1 49 0 6 1186 38240 7 0 0 chr6 78869944 78875523 -70641514 + L1Md_A LINE L1 7 5586 -297 6 1186 9019 2 0 0 chr6 78875523 78876517 -70640520 + L1Md_A LINE L1 5587 6580 -2 6 1186 22 0 0 0 chr6 78876517 78876539 -70640498 + AT_rich Low_complexity Low_complexity 1 22 0 6 1186 7787 146 15 8 chr6 78876557 78878699 -70638338 + Lx LINE L1 4493 6654 0 6 1186 22 0 0 0 chr6 78878803 78878825 -70638212 + AT_rich Low_complexity Low_complexity 1 22 0 6 1186 1168 56 0 0 chr6 78879055 78879199 -70637838 + B1_Mm SINE Alu 1 144 -3 6 1186 441 0 0 0 chr6 78879199 78879248 -70637789 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 6 1186 264 0 0 159 chr6 78879249 78879381 -70637656 + (AGTAG)n Simple_repeat Simple_repeat 4 114 0 6 1186 1007 70 23 0 chr6 78879485 78879614 -70637423 + B1_Mm SINE Alu 1 132 -15 6 1186 604 313 35 120 chr6 78879993 78880334 -70636703 - MT2A LTR ERVL -101 432 121 6 1186 265 372 47 33 chr6 78880661 78880811 -70636226 + L2b LINE L2 2987 3138 -237 6 1186 231 191 0 0 chr6 78880923 78880970 -70636067 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1186 185 94 31 0 chr6 78880972 78881004 -70636033 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1186 4483 36 40 7 chr6 78881230 78881784 -70635253 + L1Md_T LINE L1 6011 6582 0 6 1186 213 39 0 0 chr6 78881820 78881846 -70635191 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1186 6977 36 1 0 chr6 78882116 78882947 -70634090 - L1Md_A LINE L1 0 6582 5751 6 1186 6336 131 62 9 chr6 78883174 78884241 -70632796 - Lx2 LINE L1 0 6997 5875 6 1186 339 380 71 22 chr6 78884741 78884924 -70632113 + B3A SINE B2 2 193 -5 6 1186 1260 325 67 27 chr6 78886175 78886833 -70630204 - Lx8 LINE L1 -83 7390 6707 6 1186 303 93 0 0 chr6 78886901 78886944 -70630093 + (TCC)n Simple_repeat Simple_repeat 1 43 0 6 1186 261 119 0 0 chr6 78886945 78886987 -70630050 + (CAT)n Simple_repeat Simple_repeat 1 42 0 6 1186 658 232 0 7 chr6 78887006 78887145 -70629892 - B1_Mur2 SINE Alu 0 149 12 6 1186 4121 217 21 17 chr6 78887332 78888097 -70628940 - Lx5 LINE L1 -496 6554 5785 6 1186 3235 40 115 0 chr6 78888097 78888523 -70628514 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1186 3826 217 21 17 chr6 78888523 78888651 -70628386 - Lx5 LINE L1 -1266 5784 5657 6 1186 36061 16 1 8 chr6 78888649 78893838 -70623199 + L1Md_A LINE L1 440 5586 -297 6 1186 8699 17 0 8 chr6 78893838 78893884 -70623153 + L1Md_A LINE L1 5587 5632 -950 6 1186 3370 38 2 0 chr6 78893884 78894279 -70622758 + MTA_Mm LTR MaLR 1 396 0 6 1186 9170 32 4 2 chr6 78894279 78895375 -70621662 + MTA_Mm-int LTR MaLR 1 1098 0 6 1186 3370 38 2 0 chr6 78895375 78895770 -70621267 + MTA_Mm LTR MaLR 1 396 0 6 1186 8699 17 0 8 chr6 78895770 78896725 -70620312 + L1Md_A LINE L1 5633 6580 -2 6 1186 2027 158 187 5 chr6 78896745 78897350 -70619687 - Lx5 LINE L1 -1780 5680 4962 6 1186 1057 276 15 21 chr6 78897348 78897677 -70619360 + Lx5 LINE L1 6721 7047 -3 6 1186 396 360 16 0 chr6 78897765 78897890 -70619147 + B1F SINE Alu 2 128 -21 6 1186 453 36 0 0 chr6 78897899 78897954 -70619083 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 6 1186 16110 101 25 22 chr6 78897969 78901316 -70615721 + L1Md_F LINE L1 379 3736 -2147 6 1186 4706 95 1 6 chr6 78901313 78902000 -70615037 + L1Md_F2 LINE L1 5875 6558 -24 6 1186 1014 9 0 0 chr6 78902000 78902115 -70614922 + (GAA)n Simple_repeat Simple_repeat 3 117 0 6 1186 457 265 159 0 chr6 78902133 78902284 -70614753 + MTEa LTR MaLR 197 371 -8 6 1186 1905 104 84 39 chr6 78902288 78902599 -70614438 + ORR1A2 LTR MaLR 1 325 -2 6 1186 616 150 8 8 chr6 78902602 78902730 -70614307 + GA-rich Low_complexity Low_complexity 3 130 0 6 1186 941 250 11 0 chr6 78902734 78902922 -70614115 - RMER13B LTR ERVK -27 881 692 6 1186 3284 155 2 0 chr6 78902914 78903461 -70613576 - RMER12 LTR ERVK -774 548 1 6 1186 723 280 31 16 chr6 78904536 78904728 -70612309 + B3A SINE B2 4 198 0 6 148 974 275 16 64 chr6 78905326 78905637 -70611400 + ORR1E LTR MaLR 18 313 -46 6 1187 3818 123 42 8 chr6 78905637 78906176 -70610861 + L1Md_F2 LINE L1 5948 6504 -78 6 1187 189 0 0 0 chr6 78906176 78906197 -70610840 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 6 1187 3818 123 42 8 chr6 78906197 78906269 -70610768 + L1Md_F2 LINE L1 6505 6579 -3 6 1187 21 0 0 0 chr6 78906478 78906499 -70610538 + AT_rich Low_complexity Low_complexity 1 21 0 6 1187 328 100 0 41 chr6 78906859 78906932 -70610105 + (TTA)n Simple_repeat Simple_repeat 3 72 0 6 1187 1874 206 0 8 chr6 78907028 78907395 -70609642 - Lx2 LINE L1 -4 6996 6633 6 1187 2225 139 11 0 chr6 78907400 78907781 -70609256 - Lx2 LINE L1 -694 6303 5919 6 1187 669 201 118 17 chr6 78907892 78908130 -70608907 - Lx9 LINE L1 -143 7501 7240 6 1187 383 287 85 8 chr6 78908556 78908686 -70608351 + MT2A LTR ERVL 1 140 -393 6 1187 459 329 127 18 chr6 78908703 78908932 -70608105 + MT2A LTR ERVL 209 462 -71 6 1187 460 115 48 0 chr6 78908938 78909042 -70607995 + (TA)n Simple_repeat Simple_repeat 1 109 0 6 1187 250 170 0 0 chr6 78909055 78909102 -70607935 + MT2A LTR ERVL 485 531 -2 6 1187 340 351 40 35 chr6 78910144 78910342 -70606695 - B3 SINE B2 -15 201 3 6 1187 224 300 17 0 chr6 78911152 78911212 -70605825 + ID4_ SINE ID 5 65 -18 6 1187 180 0 0 0 chr6 78911543 78911563 -70605474 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1187 246 270 67 0 chr6 78912433 78912522 -70604515 + Lx9 LINE L1 7371 7465 -179 6 1187 369 0 0 0 chr6 78912522 78912563 -70604474 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1187 790 130 14 7 chr6 78912569 78912716 -70604321 + L1_Mus3 LINE L1 6486 6633 -5 6 1187 671 35 0 11 chr6 78912804 78912891 -70604146 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 6 1187 7617 154 18 61 chr6 78912891 78915118 -70601919 - Lx3A LINE L1 -15 6966 4858 6 1187 28 0 0 0 chr6 78915511 78915539 -70601498 + AT_rich Low_complexity Low_complexity 1 28 0 6 1187 1475 287 102 19 chr6 78915578 78916197 -70600840 - Lx6 LINE L1 -30 7430 6468 6 1187 265 223 105 11 chr6 78916197 78916292 -70600745 - Lx6 LINE L1 -1241 6219 6116 6 1187 402 121 0 0 chr6 78916321 78916387 -70600650 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1187 1826 210 34 6 chr6 78916392 78916895 -70600142 - Lx6 LINE L1 -1445 6015 5499 6 1187 24 0 0 0 chr6 78917359 78917383 -70599654 + AT_rich Low_complexity Low_complexity 1 24 0 6 1187 254 29 29 0 chr6 78918026 78918061 -70598976 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1187 29 0 0 0 chr6 78918245 78918274 -70598763 + AT_rich Low_complexity Low_complexity 1 29 0 6 1187 278 284 0 39 chr6 78918496 78918573 -70598464 + RCHARR1 DNA MER1_type 4 77 -897 6 1187 259 296 190 57 chr6 78918579 78918962 -70598075 + RMER20B LTR ERVK 69 516 0 6 1187 21 0 0 0 chr6 78918991 78919012 -70598025 + AT_rich Low_complexity Low_complexity 1 21 0 6 1187 232 287 68 17 chr6 78919068 78919185 -70597852 + RCHARR1 DNA MER1_type 831 953 -21 6 1187 2041 174 25 55 chr6 78919262 78919427 -70597610 - RMER4B LTR ERVK -141 444 279 6 1187 3226 165 157 5 chr6 78919427 78920066 -70596971 - RMER19A LTR ERVK -1 736 1 6 1187 2041 174 25 55 chr6 78920066 78920333 -70596704 - RMER4B LTR ERVK -307 278 25 6 1187 318 106 0 0 chr6 78920572 78920619 -70596418 + (A)n Simple_repeat Simple_repeat 1 47 0 6 1187 595 335 0 7 chr6 78921509 78921659 -70595378 - B1_Mur2 SINE Alu 0 149 1 6 1187 276 158 0 0 chr6 78921891 78921948 -70595089 + C-rich Low_complexity Low_complexity 2 58 0 6 1187 827 80 8 0 chr6 78921948 78922073 -70594964 + (TC)n Simple_repeat Simple_repeat 2 127 0 6 1187 189 0 0 0 chr6 78922073 78922093 -70594944 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1187 524 329 78 17 chr6 78922106 78922338 -70594699 - B4A SINE B4 -28 264 19 6 1187 226 265 0 0 chr6 78922620 78922669 -70594368 - PB1D7 SINE Alu -7 113 65 6 1187 602 291 18 60 chr6 78923265 78923433 -70593604 - RSINE1 SINE B4 0 165 5 6 1187 260 308 22 0 chr6 78923699 78923790 -70593247 + B1F SINE Alu 56 148 -1 6 1187 626 353 81 40 chr6 78923819 78924173 -70592864 + MTD LTR MaLR 13 402 -17 6 1187 24 0 0 0 chr6 78924932 78924956 -70592081 + AT_rich Low_complexity Low_complexity 1 24 0 6 1187 512 56 14 0 chr6 78925217 78925289 -70591748 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1187 440 312 46 0 chr6 78925780 78925953 -70591084 + B3A SINE B2 1 181 -17 6 1187 29 0 0 0 chr6 78926164 78926193 -70590844 + AT_rich Low_complexity Low_complexity 1 29 0 6 1187 27 29 0 0 chr6 78926320 78926354 -70590683 + AT_rich Low_complexity Low_complexity 1 34 0 6 1187 560 339 15 0 chr6 78926379 78926574 -70590463 + B3 SINE B2 4 201 -15 6 1187 2897 52 29 0 chr6 78926673 78927020 -70590017 - IAPEY2_LTR LTR ERVK 0 357 1 6 1187 2787 118 16 31 chr6 78927020 78927675 -70589362 - IAPEY3-int LTR ERVK 0 7581 6984 6 1187 195 354 53 9 chr6 78927675 78927789 -70589248 - L3b LINE CR1 -29 453 335 6 1187 5877 145 14 50 chr6 78927797 78928899 -70588138 - IAPEY3-int LTR ERVK -6095 1585 524 6 1187 690 140 57 45 chr6 78928898 78929055 -70587982 - IAPLTR4_I LTR ERVK -1290 180 22 6 1187 2720 42 63 0 chr6 78929059 78929392 -70587645 - IAPEY2_LTR LTR ERVK -3 354 1 7 1187 296 289 0 0 chr6 78929745 78929821 -70587216 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 1187 236 324 47 133 chr6 78929821 78929949 -70587088 - RSINE1 SINE B4 0 165 49 7 1187 3422 82 9 4 chr6 78929957 78930424 -70586613 + L1_Mus1 LINE L1 6099 6567 0 7 1187 216 0 0 0 chr6 78930619 78930643 -70586394 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1187 246 349 115 18 chr6 78930986 78931263 -70585774 + Kanga1 DNA Tc2 1441 1743 -2 7 1187 23 0 0 0 chr6 78931854 78931877 -70585160 + AT_rich Low_complexity Low_complexity 1 23 0 7 1187 275 301 137 22 chr6 78932026 78932165 -70584872 + MTD LTR MaLR 37 191 -216 7 1187 1060 102 0 0 chr6 78932168 78932315 -70584722 + B1_Mus2 SINE Alu 1 147 0 7 1187 213 119 0 0 chr6 78932315 78932357 -70584680 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1187 462 318 13 33 chr6 78932357 78932510 -70584527 + MTD LTR MaLR 196 345 -74 7 1187 4143 39 0 0 chr6 78932635 78933117 -70583920 + LTRIS_Mm LTR ERV1 1 482 0 7 1187 271 340 19 31 chr6 78933398 78933559 -70583478 - Lx8 LINE L1 -84 7389 7231 7 1187 276 276 86 8 chr6 78933653 78933770 -70583267 + Lx8 LINE L1 6856 6981 -492 7 1187 1873 185 18 3 chr6 78933777 78934118 -70582919 - Lx2 LINE L1 0 6997 6652 7 1187 6362 60 6 22 chr6 78934267 78935102 -70581935 + RLTR13B2 LTR ERVK 1 822 0 7 1187 246 349 38 0 chr6 78935102 78935208 -70581829 + Lx8 LINE L1 7109 7218 -255 7 1187 372 347 32 32 chr6 78935602 78935757 -70581280 + RSINE1 SINE B4 3 157 -8 7 1187 673 307 41 10 chr6 78936327 78936521 -70580516 + B3 SINE B2 16 215 -1 7 1187 23 68 0 0 chr6 78936730 78936774 -70580263 + AT_rich Low_complexity Low_complexity 1 44 0 7 1187 310 290 51 42 chr6 78936784 78936919 -70580118 + MTEa LTR MaLR 187 323 -56 7 1187 606 293 54 29 chr6 78937093 78937297 -70579740 - B3 SINE B2 -7 209 1 7 1187 4975 209 49 75 chr6 78937986 78938283 -70578754 - RMER12 LTR ERVK 0 1322 1000 7 1187 198 103 0 0 chr6 78938283 78938312 -70578725 + (CAGG)n Simple_repeat Simple_repeat 2 30 0 7 1187 4975 196 58 58 chr6 78938312 78938329 -70578708 - RMER12 LTR ERVK -323 999 955 7 1187 675 35 0 0 chr6 78938329 78938415 -70578622 + (CAGAGA)n Simple_repeat Simple_repeat 4 89 0 7 1187 4975 196 58 58 chr6 78938415 78939003 -70578034 - RMER12 LTR ERVK -368 954 370 7 1187 888 112 12 36 chr6 78939003 78939169 -70577868 - L1_Mus3 LINE L1 -7 6631 6470 7 1187 4975 196 58 58 chr6 78939169 78939549 -70577488 - RMER12 LTR ERVK -953 369 4 7 1187 25276 73 5 5 chr6 78939936 78941540 -70575497 + L1Md_F2 LINE L1 366 1969 -3914 7 1187 245 29 0 29 chr6 78941540 78941575 -70575462 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1187 25276 86 5 4 chr6 78941575 78945193 -70571844 + L1Md_F2 LINE L1 1970 5585 -298 7 1187 8099 43 4 2 chr6 78945194 78946184 -70570853 + L1Md_F2 LINE L1 5587 6578 -4 7 1187 183 129 0 0 chr6 78946223 78946254 -70570783 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1187 230 286 97 28 chr6 78947373 78947445 -70569592 + ID4_ SINE ID 6 82 -1 7 1187 453 36 0 0 chr6 78947476 78947531 -70569506 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1187 1478 206 108 19 chr6 78947630 78947991 -70569046 + Lx6 LINE L1 7068 7460 0 7 1187 381 258 71 47 chr6 78948293 78948505 -70568532 - Lx7 LINE L1 0 7696 7480 7 1187 534 57 0 0 chr6 78948517 78948587 -70568450 + (GA)n Simple_repeat Simple_repeat 1 70 0 7 1187 2142 268 56 45 chr6 78948591 78948840 -70568197 - Lx7 LINE L1 -1253 6443 6189 7 1187 354 45 0 0 chr6 78948840 78948884 -70568153 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1187 2142 268 56 45 chr6 78948884 78949233 -70567804 - Lx7 LINE L1 -1508 6188 5820 7 1187 1115 42 21 0 chr6 78949233 78949376 -70567661 - B1_Mus1 SINE Alu 0 148 3 7 1187 2142 268 56 45 chr6 78949376 78949504 -70567533 - Lx7 LINE L1 -1877 5819 5710 7 1187 226 278 43 101 chr6 78949789 78949997 -70567040 + L1M3 LINE L1 4599 4794 -1346 7 1187 438 187 0 0 chr6 78950001 78950092 -70566945 + (TA)n Simple_repeat Simple_repeat 1 91 0 7 1187 306 0 0 0 chr6 78950092 78950126 -70566911 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1187 359 286 90 27 chr6 78950126 78950493 -70566544 + L1M3 LINE L1 4865 5254 -886 7 1187 339 385 68 34 chr6 78951874 78952140 -70564897 - MER21B LTR ERV1 -557 306 32 7 1187 710 78 10 0 chr6 78952141 78952243 -70564794 + (TAAAA)n Simple_repeat Simple_repeat 4 106 0 7 1187 918 231 249 12 chr6 78952426 78952759 -70564278 + MTD LTR MaLR 1 412 -7 7 1187 212 325 37 24 chr6 78953365 78953447 -70563590 - B3A SINE B2 -102 96 14 7 1187 275 71 24 0 chr6 78953656 78953698 -70563339 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 1187 32 26 0 0 chr6 78954023 78954062 -70562975 + AT_rich Low_complexity Low_complexity 1 39 0 7 1187 252 0 0 0 chr6 78955588 78955616 -70561421 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1187 361 342 108 41 chr6 78956972 78957240 -70559797 + B4A SINE B4 5 290 -2 7 1187 324 0 0 0 chr6 78957321 78957357 -70559680 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 1187 627 326 28 0 chr6 78957732 78957910 -70559127 - B3 SINE B2 -30 186 4 7 1187 624 299 71 60 chr6 78958120 78958486 -70558551 - RLTR20A LTR ERVK 0 578 188 7 1187 1185 160 37 9 chr6 78958486 78958701 -70558336 - Lx2 LINE L1 0 6997 6777 7 1187 558 325 121 76 chr6 78958701 78958887 -70558150 - RLTR20A LTR ERVK -391 187 1 7 1187 5244 39 1 3 chr6 78959327 78959974 -70557063 + L1Md_F3 LINE L1 5939 6584 0 7 1187 327 369 15 29 chr6 78961102 78961239 -70555798 - MLT1E LTR MaLR -52 601 467 7 1187 479 250 58 33 chr6 78961246 78961366 -70555671 + MTD LTR MaLR 2 124 -295 7 1187 1001 252 5 0 chr6 78961341 78961543 -70555494 - MTD LTR MaLR -54 365 163 7 1187 359 250 0 12 chr6 78961714 78961799 -70555238 + MTD LTR MaLR 107 190 -229 7 1187 785 313 110 26 chr6 78961856 78962128 -70554909 - MTEa LTR MaLR -46 333 39 7 1187 270 0 0 0 chr6 78962307 78962337 -70554700 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 7 1187 864 50 0 0 chr6 78962344 78962464 -70554573 - L1Md_F3 LINE L1 -14 6570 6451 7 1187 506 321 65 24 chr6 78962885 78963054 -70553983 + ID_B1 SINE B4 23 198 -26 7 1187 444 77 0 0 chr6 78963408 78963473 -70553564 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1187 313 330 0 0 chr6 78963501 78963610 -70553427 + (CA)n Simple_repeat Simple_repeat 2 110 0 7 1187 1769 82 74 0 chr6 78963808 78964051 -70552986 + L1_Mus1 LINE L1 6300 6560 -7 7 1187 327 65 0 0 chr6 78964076 78964122 -70552915 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1187 7134 167 24 12 chr6 78965710 78967078 -70549959 - MYSERV16_I-int LTR ERVK -131 2195 812 7 1187 323 281 0 0 chr6 78967108 78967204 -70549833 + (CATATA)n Simple_repeat Simple_repeat 6 101 0 7 1187 1743 177 85 27 chr6 78967211 78967623 -70549414 - MYSERV16_I-int LTR ERVK -1547 779 344 7 1187 445 264 115 8 chr6 78967778 78967908 -70549129 + RSINE1 SINE B4 3 146 -19 7 1187 228 35 0 0 chr6 78967920 78967949 -70549088 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1187 2859 153 4 8 chr6 78968065 78968552 -70548485 + Lx LINE L1 6155 6639 -15 7 1187 501 241 109 26 chr6 78968662 78968854 -70548183 + B3 SINE B2 3 210 -6 7 1187 4727 54 0 17 chr6 78968873 78969474 -70547563 + L1Md_F2 LINE L1 5967 6557 -25 7 1187 207 88 0 0 chr6 78969477 78969511 -70547526 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 7 1187 3916 123 4 0 chr6 78969535 78970246 -70546791 - Lx LINE L1 -521 6133 5419 7 1187 426 356 31 119 chr6 78970316 78970506 -70546531 + MER45B DNA Tip100 272 450 -590 7 1187 1046 118 0 0 chr6 78970506 78970650 -70546387 + B1_Mus1 SINE Alu 1 144 -4 7 1187 426 356 31 119 chr6 78970650 78970813 -70546224 + MER45B DNA Tip100 451 594 -446 7 1187 487 290 175 0 chr6 78970865 78971048 -70545989 - B3 SINE B2 0 216 2 7 1187 428 231 80 58 chr6 78971736 78971874 -70545163 - MTD LTR MaLR -38 381 241 7 1187 3863 59 2 34 chr6 78971874 78972397 -70544640 + L1Md_F2 LINE L1 6073 6578 -4 7 1187 360 0 0 0 chr6 78972532 78972572 -70544465 + (TAA)n Simple_repeat Simple_repeat 3 42 0 7 1187 372 226 32 21 chr6 78972661 78972756 -70544281 + MTEa LTR MaLR 7 102 -277 7 1187 343 206 15 0 chr6 78972895 78972963 -70544074 + MTEa LTR MaLR 299 367 -12 7 1187 396 268 154 0 chr6 78973183 78973306 -70543731 + RSINE1 SINE B4 18 159 -6 7 1187 231 125 0 0 chr6 78973401 78973441 -70543596 + (TTG)n Simple_repeat Simple_repeat 3 42 0 7 1187 477 291 46 41 chr6 78974163 78974373 -70542664 + B3A SINE B2 2 212 -4 7 1187 2649 201 13 18 chr6 78974400 78974547 -70542490 + Lx4B LINE L1 6424 6568 -490 7 1187 3007 67 12 5 chr6 78974547 78974965 -70542072 - BGLII LTR ERVK 0 421 1 7 1187 2649 201 13 18 chr6 78974965 78975360 -70541677 + Lx4B LINE L1 6569 6963 -95 7 1187 688 302 34 30 chr6 78975360 78975611 -70541426 - MTC LTR MaLR -105 302 63 7 1187 480 303 56 20 chr6 78975659 78975908 -70541129 - L1MDa LINE L1 -4585 2048 1791 7 1187 410 273 29 29 chr6 78976051 78976153 -70540884 - B3A SINE B2 -78 120 19 7 1187 322 372 42 37 chr6 78976157 78976372 -70540665 - L1MDa LINE L1 -4998 1542 1327 7 1187 637 377 14 3 chr6 78976425 78976710 -70540327 - B4A SINE B4 -4 288 1 7 1187 494 224 10 0 chr6 78976710 78976808 -70540229 - MT2A LTR ERVL -432 101 3 7 1187 234 179 36 0 chr6 78976968 78977024 -70540013 - L1MDb LINE L1 -5487 922 865 7 1187 534 261 25 0 chr6 78977556 78977675 -70539362 + RSINE1 SINE B4 3 124 -41 7 1187 21 95 0 0 chr6 78977777 78977840 -70539197 + AT_rich Low_complexity Low_complexity 1 63 0 7 1187 25 0 0 0 chr6 78978148 78978173 -70538864 + AT_rich Low_complexity Low_complexity 1 25 0 7 1187 303 399 26 7 chr6 78978747 78978901 -70538136 - MER89 LTR ERV1 -269 290 134 7 1187 6958 150 86 11 chr6 78978916 78980335 -70536702 - Lx3C LINE L1 -2 6974 5452 7 1187 959 109 10 80 chr6 78980345 78980544 -70536493 - Lx LINE L1 -7 6647 6463 7 1187 951 107 68 19 chr6 78980765 78980927 -70536110 + RMER16-int LTR ERVK 141 310 -5096 7 1187 4194 138 53 19 chr6 78980935 78981635 -70535402 + RMER16-int LTR ERVK 695 1418 -3988 7 1187 4313 142 74 35 chr6 78981637 78983739 -70533298 + RLTR1B-int LTR ERV1 833 2555 -744 7 1187 1432 279 52 14 chr6 78983726 78984152 -70532885 + RLTR1B-int LTR ERV1 3705 4146 -917 7 1187 951 194 64 14 chr6 78984237 78984457 -70532580 + RLTR1B-int LTR ERV1 4791 5021 -42 7 1187 4188 72 29 7 chr6 78984460 78985008 -70532029 + LTRIS2 LTR ERV1 5 564 0 7 1187 308 61 20 0 chr6 78985450 78985499 -70531538 - L1_Mus2 LINE L1 0 6566 6517 7 1187 32 26 0 0 chr6 78986076 78986115 -70530922 + AT_rich Low_complexity Low_complexity 1 39 0 7 1187 29 47 0 0 chr6 78986166 78986209 -70530828 + AT_rich Low_complexity Low_complexity 1 43 0 7 1187 22 70 0 0 chr6 78986222 78986265 -70530772 + AT_rich Low_complexity Low_complexity 1 43 0 7 1187 297 0 0 0 chr6 78986464 78986497 -70530540 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 8 1187 275 292 0 14 chr6 78986500 78986585 -70530452 + ID4 SINE ID 10 93 -59 8 1187 231 310 186 0 chr6 78987155 78987268 -70529769 + B1F SINE Alu 10 143 -6 8 1187 320 270 2 0 chr6 78987287 78987371 -70529666 + BC1_Mm scRNA scRNA 1 85 -67 8 1187 423 0 0 0 chr6 78987481 78987528 -70529509 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1187 366 23 0 0 chr6 78987528 78987570 -70529467 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1187 301 271 9 78 chr6 78987604 78987720 -70529317 - Lx9 LINE L1 -176 7468 7361 8 1187 235 133 48 32 chr6 78987786 78987848 -70529189 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 8 1187 17580 20 0 1 chr6 78987917 78989957 -70527080 + L1_Mm LINE L1 3548 5586 -297 8 1187 8215 44 0 0 chr6 78989957 78990952 -70526085 + L1Md_T LINE L1 5588 6582 0 8 1187 312 27 0 0 chr6 78991473 78991510 -70525527 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1187 1525 287 74 4 chr6 78991510 78991982 -70525055 + Lx6 LINE L1 6956 7460 0 8 1187 529 215 0 18 chr6 78992052 78992152 -70524885 + B1_Mur1 SINE Alu 42 141 -8 8 1187 991 140 6 11 chr6 78992152 78992333 -70524704 + GA-rich Low_complexity Low_complexity 1 180 0 8 1187 2446 137 176 14 chr6 78992461 78992944 -70524093 - RLTR31_Mm LTR ERVK 0 561 1 8 1187 298 405 8 61 chr6 78993008 78993271 -70523766 - MLT1G LTR MaLR -326 265 17 8 1187 542 335 56 35 chr6 78993332 78993617 -70523420 - B4A SINE B4 0 292 2 8 1187 762 245 126 9 chr6 78993847 78994069 -70522968 - Lx LINE L1 -3 7047 6800 8 1187 4880 231 73 32 chr6 78994230 78994438 -70522599 - RMER12B LTR ERVK 0 1404 1206 8 1187 585 0 0 0 chr6 78994438 78994503 -70522534 + (GA)n Simple_repeat Simple_repeat 2 66 0 8 1187 4880 231 73 32 chr6 78994503 78995643 -70521394 - RMER12B LTR ERVK -199 1205 1 8 1187 1939 213 34 62 chr6 78995920 78996391 -70520646 - Lx LINE L1 -3 6651 6194 8 1187 285 153 0 0 chr6 78996595 78996667 -70520370 + T-rich Low_complexity Low_complexity 1 72 0 8 1187 983 223 242 12 chr6 78996962 78997284 -70519753 + MTD LTR MaLR 10 405 -14 8 1187 3183 45 6 11 chr6 78997689 78998111 -70518926 - RLTR13B2 LTR ERVK -333 650 1 8 1187 540 250 116 121 chr6 78998977 78999150 -70517887 + B3A SINE B2 27 198 0 8 1187 238 241 52 0 chr6 78999729 78999787 -70517250 + MTE2a LTR MaLR 3 63 -316 8 1187 467 347 14 0 chr6 79000082 79000226 -70516811 + ID_B1 SINE B4 78 223 -1 1 1187 714 174 0 0 chr6 79001960 79002098 -70514939 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 1187 250 256 37 0 chr6 79002318 79002400 -70514637 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 3 1187 244 188 21 0 chr6 79002423 79002471 -70514566 + L1VL2 LINE L1 443 491 -5844 4 1187 7351 169 6 9 chr6 79002588 79004071 -70512966 + Lx2 LINE L1 4479 5953 -1044 5 1187 1093 77 7 0 chr6 79004069 79004212 -70512825 + Lx2 LINE L1 6455 6598 -399 5 1187 351 301 110 48 chr6 79004213 79004422 -70512615 - RMER12 LTR ERVK 0 1322 1101 6 1187 6066 87 7 9 chr6 79004664 79005530 -70511507 - RLTR22_Mus LTR ERVK -944 864 1 7 1187 2306 168 0 22 chr6 79005530 79005943 -70511094 + Lx2 LINE L1 6594 6997 0 8 1187 1221 20 0 0 chr6 79006160 79006308 -70510729 + L1Md_A LINE L1 6435 6582 0 9 1187 364 316 80 7 chr6 79006881 79007018 -70510019 - MER2 DNA MER2_type -48 297 151 1 1187 25 65 0 0 chr6 79009361 79009407 -70507630 + AT_rich Low_complexity Low_complexity 1 46 0 1 1187 294 202 178 11 chr6 79009501 79009591 -70507446 - MTD LTR MaLR 0 419 315 1 1187 21 36 0 0 chr6 79009736 79009764 -70507273 + AT_rich Low_complexity Low_complexity 1 28 0 1 1187 4235 125 15 43 chr6 79009764 79010482 -70506555 - L1_Mus2 LINE L1 0 6566 5869 1 1187 7176 110 7 4 chr6 79010546 79011739 -70505298 + L1_Mus3 LINE L1 5440 6638 0 1 1187 363 216 0 74 chr6 79011920 79012015 -70505022 - Lx9 LINE L1 -803 6841 6754 1 1187 193 89 0 43 chr6 79012081 79012128 -70504909 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 1 1187 404 259 42 25 chr6 79012154 79012273 -70504764 - U1 snRNA snRNA -34 131 11 1 1187 274 333 10 0 chr6 79012549 79012648 -70504389 - ID_B1 SINE B4 -6 218 119 1 1187 807 322 93 19 chr6 79012650 79013382 -70503655 - L1M4c LINE L1 -1520 4856 4071 2 1187 367 325 100 9 chr6 79013417 79013647 -70503390 - L1M4c LINE L1 -3324 3055 2805 2 1187 1671 336 62 37 chr6 79014240 79015803 -70501234 + MERVL_2A-int LTR ERVL 21 1612 -4102 2 1187 841 309 69 35 chr6 79015790 79016223 -70500814 + ERVL-int LTR ERVL 4492 4939 -818 2 1187 382 392 24 60 chr6 79016372 79016540 -70500497 - RSINE1 SINE B4 -2 163 2 2 1187 282 257 138 128 chr6 79016774 79016970 -70500067 - B3A SINE B2 0 198 1 2 1187 362 391 19 14 chr6 79016993 79017203 -70499834 - L1M4c LINE L1 -4644 1740 1530 2 1187 1737 273 20 9 chr6 79017519 79017966 -70499071 - Lx6 LINE L1 -26 7434 6983 2 1187 684 169 153 9 chr6 79018011 79018226 -70498811 - Lx7 LINE L1 -2 7694 7449 2 1187 993 209 5 0 chr6 79018235 79018450 -70498587 - L1_Mur3 LINE L1 -6472 1240 1025 2 1187 417 39 0 0 chr6 79018451 79018502 -70498535 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1187 477 92 0 0 chr6 79018502 79018578 -70498459 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1187 367 137 14 14 chr6 79018609 79018683 -70498354 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 1187 1699 257 30 78 chr6 79018689 79019193 -70497844 - L1_Mur3 LINE L1 -6767 945 472 2 1187 2394 126 62 3 chr6 79019193 79019567 -70497470 + MTA_Mm LTR MaLR 1 396 0 3 1187 1699 257 30 78 chr6 79019567 79019661 -70497376 - L1_Mur3 LINE L1 -7241 471 376 2 1187 405 0 0 0 chr6 79019821 79019866 -70497171 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1187 378 0 0 0 chr6 79019867 79019909 -70497128 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1187 2192 239 103 6 chr6 79020016 79020702 -70496335 + Lx6 LINE L1 5527 6245 -1215 3 1187 246 273 0 15 chr6 79020699 79020766 -70496271 + Lx4B LINE L1 6304 6369 -689 3 1187 976 342 47 19 chr6 79020809 79021304 -70495733 + Lx6 LINE L1 6518 7369 -91 3 1187 3251 234 58 24 chr6 79021304 79022407 -70494630 + MYSERV-int LTR ERVK 5386 6352 -198 3 1187 606 210 180 0 chr6 79022581 79022748 -70494289 + MYSERV-int LTR ERVK 6354 6550 0 3 1187 772 289 34 81 chr6 79022748 79023182 -70493855 + BGLII_B LTR ERVK 1 414 -27 3 1187 25 0 0 0 chr6 79024250 79024275 -70492762 + AT_rich Low_complexity Low_complexity 1 25 0 3 1187 288 243 32 12 chr6 79024343 79024448 -70492589 + L1M2 LINE L1 4858 4963 -1177 3 1187 309 296 85 70 chr6 79024508 79024766 -70492271 + L1M2 LINE L1 5013 5274 -872 3 1187 251 72 0 23 chr6 79024964 79025007 -70492030 + (GGA)n Simple_repeat Simple_repeat 2 43 0 3 1187 405 322 132 25 chr6 79025111 79025315 -70491722 - MTE2a LTR MaLR -85 294 69 4 1187 335 320 60 26 chr6 79025402 79025668 -70491369 + L1M2 LINE L1 5409 5683 -614 3 1187 186 208 0 0 chr6 79026452 79026500 -70490537 + CT-rich Low_complexity Low_complexity 1 48 0 4 1187 203 267 0 0 chr6 79026520 79026565 -70490472 + (CATA)n Simple_repeat Simple_repeat 3 47 0 4 1187 21 71 0 0 chr6 79026565 79026607 -70490430 + AT_rich Low_complexity Low_complexity 1 42 0 4 1187 428 0 19 0 chr6 79026678 79026730 -70490307 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1187 259 317 126 19 chr6 79026730 79026833 -70490204 - RSINE1 SINE B4 -41 124 11 4 1187 1005 276 20 4 chr6 79027424 79027671 -70489366 - RMER13A LTR ERVK 0 860 610 4 1187 3007 88 7 2 chr6 79027671 79028105 -70488932 - L1_Mm LINE L1 -420 5463 5028 4 1187 4467 80 91 0 chr6 79028105 79028721 -70488316 + L1_Mus1 LINE L1 5896 6567 0 4 1187 399 284 74 40 chr6 79028742 79028944 -70488093 + B3 SINE B2 8 216 0 4 1187 21 0 0 0 chr6 79029121 79029142 -70487895 + AT_rich Low_complexity Low_complexity 1 21 0 5 1187 270 370 25 70 chr6 79029851 79030095 -70486942 + B4A SINE B4 1 233 -59 5 1187 294 125 0 0 chr6 79030138 79030186 -70486851 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1187 384 77 0 0 chr6 79030445 79030497 -70486540 + (GGA)n Simple_repeat Simple_repeat 3 54 0 5 1187 431 372 13 0 chr6 79030949 79031105 -70485932 - RSINE1 SINE B4 -5 160 3 5 1187 23 54 0 0 chr6 79032056 79032093 -70484944 + AT_rich Low_complexity Low_complexity 1 37 0 5 1187 21 0 0 0 chr6 79032277 79032298 -70484739 + AT_rich Low_complexity Low_complexity 1 21 0 5 1187 238 307 0 74 chr6 79032361 79032442 -70484595 - B3A SINE B2 -16 182 108 5 1187 406 326 15 0 chr6 79032829 79032964 -70484073 + B1F SINE Alu 12 148 -1 5 1187 714 272 49 10 chr6 79033263 79033467 -70483570 + B3 SINE B2 5 216 0 5 1187 713 311 93 62 chr6 79033486 79033938 -70483099 + MLT1D LTR MaLR 34 499 -6 6 1187 5118 75 0 3 chr6 79034452 79035123 -70481914 + L1Md_F2 LINE L1 5904 6572 -10 6 1187 411 21 0 0 chr6 79035842 79035890 -70481147 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1187 22 0 0 0 chr6 79036147 79036169 -70480868 + AT_rich Low_complexity Low_complexity 1 22 0 6 1188 387 0 0 0 chr6 79037033 79037076 -70479961 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1188 322 190 0 0 chr6 79037585 79037643 -70479394 + B3A SINE B2 1 58 -140 6 1188 23 0 0 0 chr6 79037981 79038004 -70479033 + AT_rich Low_complexity Low_complexity 1 23 0 6 1188 365 359 9 70 chr6 79038012 79038066 -70478971 - B3 SINE B2 -13 203 152 6 1188 534 31 0 0 chr6 79038066 79038130 -70478907 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1188 409 312 33 40 chr6 79038130 79038288 -70478749 - B3A SINE B2 -65 151 4 6 1188 1923 103 43 0 chr6 79039029 79039310 -70477727 - L1_Mus2 LINE L1 -2 6564 6272 6 1188 387 0 0 0 chr6 79039718 79039761 -70477276 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1188 420 355 42 53 chr6 79040224 79040584 -70476453 - Lx9 LINE L1 -203 7441 7086 7 1188 4298 188 101 7 chr6 79041876 79042845 -70474192 - Lx5 LINE L1 -94 5783 4724 7 1188 4810 229 56 22 chr6 79042840 79044000 -70473037 + Lx5 LINE L1 5804 7003 -47 7 1188 253 68 45 0 chr6 79044118 79044162 -70472875 + (TAA)n Simple_repeat Simple_repeat 1 46 0 7 1188 183 80 0 0 chr6 79045110 79045135 -70471902 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1188 440 318 24 48 chr6 79045139 79045304 -70471733 - RSINE1 SINE B4 -2 163 3 7 1188 24 32 0 0 chr6 79045339 79045370 -70471667 + AT_rich Low_complexity Low_complexity 1 31 0 7 1188 597 161 25 0 chr6 79045474 79045636 -70471401 + (TCTA)n Simple_repeat Simple_repeat 1 166 0 7 1188 198 103 0 0 chr6 79045657 79045686 -70471351 + (TTCTC)n Simple_repeat Simple_repeat 1 29 0 7 1188 253 344 21 0 chr6 79046026 79046119 -70470918 - RMER15 LTR ERVL -19 556 462 7 1188 444 291 23 8 chr6 79046468 79046596 -70470441 - RMER15 LTR ERVL -106 469 340 7 1188 424 353 79 39 chr6 79048136 79048416 -70468621 + B4A SINE B4 2 292 0 8 1188 459 0 0 0 chr6 79048426 79048477 -70468560 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 1188 2892 41 2 108 chr6 79049678 79050112 -70466925 + RLTR10 LTR ERVK 1 388 -2 8 1188 226 268 0 27 chr6 79050948 79051021 -70466016 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 8 1188 294 20 39 39 chr6 79051179 79051231 -70465806 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 8 1188 2649 28 18 12 chr6 79051244 79051575 -70465462 - L1Md_F3 LINE L1 0 6584 6252 8 1188 2718 50 3 0 chr6 79051575 79051912 -70465125 + L1Md_F3 LINE L1 5822 6159 -423 8 1188 1077 77 14 0 chr6 79051913 79052056 -70464981 - B1_Mus2 SINE Alu 0 147 3 8 1188 864 295 55 25 chr6 79052060 79052456 -70464581 - RMER15 LTR ERVL -113 462 27 8 1188 32 57 0 0 chr6 79053093 79053146 -70463891 + AT_rich Low_complexity Low_complexity 1 53 0 8 1188 6917 166 44 21 chr6 79053973 79056015 -70461022 - Lx4A LINE L1 -1 7057 4964 8 1188 7871 31 1 4 chr6 79056021 79056963 -70460074 - L1Md_F3 LINE L1 -10 6574 5636 9 1188 453 62 46 0 chr6 79056947 79057012 -70460025 - L1_Mm LINE L1 -1119 4764 4697 9 1188 704 139 66 0 chr6 79057012 79057149 -70459888 - Lx4A LINE L1 -895 4982 4837 8 1188 241 323 48 72 chr6 79057149 79057316 -70459721 - RLTR25B LTR ERVK 0 1028 866 9 1188 4864 157 18 7 chr6 79057958 79059510 -70457527 - L1_Mur2 LINE L1 -3729 2148 579 9 1188 209 33 33 0 chr6 79060203 79060233 -70456804 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1188 202 192 0 37 chr6 79060353 79060407 -70456630 + (TTA)n Simple_repeat Simple_repeat 2 53 0 9 1188 246 216 108 0 chr6 79060419 79060521 -70456516 + RCHARR1 DNA MER1_type 325 437 -537 9 1188 312 27 0 0 chr6 79060521 79060558 -70456479 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1188 246 143 0 0 chr6 79060558 79060607 -70456430 + (GA)n Simple_repeat Simple_repeat 1 49 0 9 1188 17639 106 5 2 chr6 79060632 79063326 -70453711 + L1_Mus1 LINE L1 3256 5957 -610 9 1188 619 138 0 0 chr6 79063329 79063423 -70453614 - Lx LINE L1 -381 6273 6180 1 1188 2680 126 2 5 chr6 79063419 79063825 -70453212 + L1_Mm LINE L1 5382 5786 -97 1 1188 4270 153 49 3 chr6 79063926 79064658 -70452379 - Lx3B LINE L1 -2 6971 6206 1 1188 3438 139 16 9 chr6 79064658 79065426 -70451611 + Lx3A LINE L1 5425 6190 -791 1 1188 251 398 0 0 chr6 79065846 79065929 -70451108 + PB1D10 SINE Alu 14 96 -21 1 1188 252 294 0 0 chr6 79065982 79066084 -70450953 + GA-rich Low_complexity Low_complexity 2 103 0 1 1188 4144 126 44 53 chr6 79066354 79067170 -70449867 + RMER17D2 LTR ERVK 1 809 0 1 1188 34 72 0 0 chr6 79067863 79067932 -70449105 + AT_rich Low_complexity Low_complexity 1 69 0 1 1188 287 336 0 106 chr6 79068131 79068254 -70448783 - PB1D7 SINE Alu -5 115 6 1 1188 273 374 40 0 chr6 79068288 79068400 -70448637 + PB1D7 SINE Alu 1 118 -2 1 1188 275 237 20 20 chr6 79068925 79069024 -70448013 + (TG)n Simple_repeat Simple_repeat 2 100 0 1 1188 240 313 157 20 chr6 79069035 79069188 -70447849 - B3A SINE B2 -16 182 9 1 1188 24 0 0 0 chr6 79069339 79069363 -70447674 + AT_rich Low_complexity Low_complexity 1 24 0 1 1188 1751 254 108 37 chr6 79070011 79070550 -70446487 + RLTR20B3 LTR ERVK 1 577 0 1 1188 32153 99 3 46 chr6 79070868 79072630 -70444407 + L1Md_F2 LINE L1 307 1985 -3898 1 1188 1364 77 44 0 chr6 79072630 79072812 -70444225 + B2_Mm1a SINE B2 1 190 -3 1 1188 32153 74 4 3 chr6 79072812 79076404 -70440633 + L1Md_F2 LINE L1 1986 5585 -298 1 1188 7938 52 8 0 chr6 79076405 79077393 -70439644 + L1Md_F2 LINE L1 5587 6582 0 1 1188 35221 37 0 1 chr6 79077398 79082843 -70434194 + L1Md_T LINE L1 50 5589 -297 1 1188 8820 8 3 2 chr6 79082843 79083838 -70433199 + L1Md_T LINE L1 5590 6585 0 1 1188 336 48 0 0 chr6 79083947 79083989 -70433048 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1188 333 0 0 0 chr6 79084051 79084088 -70432949 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1188 678 113 0 0 chr6 79084314 79084438 -70432599 + (TC)n Simple_repeat Simple_repeat 1 124 0 1 1188 216 0 0 0 chr6 79084438 79084462 -70432575 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1188 303 28 0 0 chr6 79084462 79084497 -70432540 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1188 314 289 93 0 chr6 79084505 79084602 -70432435 - B4A SINE B4 -43 249 144 1 1188 35 63 0 0 chr6 79085125 79085188 -70431849 + AT_rich Low_complexity Low_complexity 1 63 0 1 1188 847 290 13 9 chr6 79085336 79085562 -70431475 - Lx9 LINE L1 -1036 6608 6382 1 1188 2743 265 67 6 chr6 79085560 79086387 -70430650 + Lx9 LINE L1 6641 7517 -127 1 1188 27 29 0 0 chr6 79086475 79086509 -70430528 + AT_rich Low_complexity Low_complexity 1 34 0 1 1188 407 319 8 16 chr6 79088773 79088894 -70428143 + RSINE1 SINE B4 12 131 -34 1 1188 24 0 0 0 chr6 79089043 79089067 -70427970 + AT_rich Low_complexity Low_complexity 1 24 0 1 1188 29 28 0 0 chr6 79089410 79089446 -70427591 + AT_rich Low_complexity Low_complexity 1 36 0 1 1188 777 232 90 5 chr6 79089903 79090132 -70426905 - Lx4B LINE L1 -5 7053 6712 1 1188 314 332 44 67 chr6 79091261 79091558 -70425479 + L1M5 LINE L1 4996 5285 -861 1 1188 379 344 68 8 chr6 79091669 79092035 -70425002 + L1M5 LINE L1 5397 5777 -407 1 1188 285 259 24 36 chr6 79094292 79094376 -70422661 + Lx8 LINE L1 7010 7092 -381 1 1188 7305 112 45 16 chr6 79094401 79095564 -70421473 + Lx3A LINE L1 5783 6978 -3 1 1188 819 265 58 0 chr6 79095691 79095880 -70421157 - B3 SINE B2 -11 205 6 1 1188 230 352 14 0 chr6 79096093 79096164 -70420873 + ID SINE ID 9 80 -144 1 1188 21 36 0 0 chr6 79096865 79096893 -70420144 + AT_rich Low_complexity Low_complexity 1 28 0 1 1188 258 287 23 11 chr6 79097440 79097528 -70419509 + MLT1A1 LTR MaLR 1 89 -319 1 1188 339 327 28 18 chr6 79097582 79097691 -70419346 + MLT1A1 LTR MaLR 245 354 -54 1 1188 944 292 95 6 chr6 79098387 79098714 -70418323 - MTEa LTR MaLR 0 379 24 1 1188 536 319 3 114 chr6 79099235 79099525 -70417512 + Lx9 LINE L1 6859 7116 -528 1 1188 328 351 9 0 chr6 79099538 79099649 -70417388 + MTE2b LTR MaLR 8 119 -260 1 1188 44 35 0 0 chr6 79100081 79100139 -70416898 + AT_rich Low_complexity Low_complexity 1 58 0 1 1188 3131 247 59 10 chr6 79100155 79100973 -70416064 - Lx2B LINE L1 -2 6998 6141 1 1188 29 47 0 0 chr6 79100973 79101016 -70416021 + AT_rich Low_complexity Low_complexity 1 43 0 1 1188 10950 56 6 0 chr6 79102668 79104749 -70412288 - L1Md_F2 LINE L1 -14 6568 4478 1 1188 265 389 6 86 chr6 79105109 79105272 -70411765 + RSINE1 SINE B4 2 151 -14 1 1188 1246 195 45 34 chr6 79105384 79105739 -70411298 + RLTR10D LTR ERVK 1 359 0 1 1188 5607 140 26 10 chr6 79106074 79106621 -70410416 - RMER17B LTR ERVK 0 958 409 1 1188 1734 78 0 0 chr6 79106621 79106852 -70410185 + L1Md_F2 LINE L1 6340 6570 -12 1 1188 5607 140 26 10 chr6 79106852 79107246 -70409791 - RMER17B LTR ERVK -550 408 1 1 1188 537 333 125 17 chr6 79107467 79107812 -70409225 + Lx8 LINE L1 7083 7464 -9 1 1188 2155 166 47 25 chr6 79107855 79108432 -70408605 + RLTR26 LTR ERVK 1 640 -2 1 1188 5376 116 38 27 chr6 79109399 79110248 -70406789 + Lx LINE L1 5790 6647 -7 1 1188 261 0 0 0 chr6 79110424 79110453 -70406584 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1188 309 307 143 16 chr6 79110690 79110872 -70406165 + MLT1F-int LTR MaLR 570 774 -715 1 1188 373 307 0 0 chr6 79111087 79111188 -70405849 - Lx8 LINE L1 -226 7247 7147 1 1188 583 290 11 34 chr6 79111206 79111381 -70405656 - Lx8 LINE L1 -772 6701 6531 1 1188 2899 31 3 14 chr6 79112299 79112661 -70404376 - L1_Mus1 LINE L1 -2 6565 6208 1 1188 297 0 0 0 chr6 79112780 79112813 -70404224 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1188 420 20 0 0 chr6 79112813 79112861 -70404176 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1188 553 346 49 0 chr6 79113717 79113960 -70403077 - Lx8 LINE L1 -956 6517 6263 1 1188 342 0 0 0 chr6 79115553 79115591 -70401446 + (TAA)n Simple_repeat Simple_repeat 3 40 0 1 1188 459 52 0 0 chr6 79116091 79116149 -70400888 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1188 289 274 0 45 chr6 79116150 79116238 -70400799 - Lx7 LINE L1 -54 7642 7559 1 1188 30558 95 16 2 chr6 79116274 79121431 -70395606 + L1Md_F2 LINE L1 356 5586 -297 1 1188 6735 104 4 16 chr6 79121432 79122416 -70394621 + L1Md_F2 LINE L1 5588 6559 -23 1 1188 220 27 54 0 chr6 79122416 79122453 -70394584 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1 1188 6735 104 4 16 chr6 79122453 79122472 -70394565 + L1Md_F2 LINE L1 6560 6578 -4 1 1188 375 178 42 131 chr6 79122498 79122666 -70394371 - Lx7 LINE L1 -285 7411 7259 1 1188 257 171 0 0 chr6 79122838 79122879 -70394158 - Lx7 LINE L1 -454 7242 7202 1 1188 21 0 0 0 chr6 79123968 79123989 -70393048 + AT_rich Low_complexity Low_complexity 1 21 0 1 1188 23 54 0 0 chr6 79124012 79124049 -70392988 + AT_rich Low_complexity Low_complexity 1 37 0 1 1188 5152 42 1 25 chr6 79124049 79124703 -70392334 - L1Md_F2 LINE L1 -11 6571 5933 1 1188 601 77 39 0 chr6 79124703 79124807 -70392230 - L1Md_F3 LINE L1 -5 6579 6472 1 1188 926 41 0 4 chr6 79124802 79124925 -70392112 - L1Md_F2 LINE L1 -645 5937 5811 1 1188 2509 152 49 14 chr6 79124918 79125364 -70391673 - Lx2 LINE L1 -43 6954 6493 1 1188 1137 111 6 0 chr6 79125364 79125526 -70391511 + Lx2 LINE L1 6322 6484 -513 1 1188 21 0 0 0 chr6 79125636 79125657 -70391380 + AT_rich Low_complexity Low_complexity 1 21 0 1 1188 1760 59 0 0 chr6 79125792 79126014 -70391023 - L1Md_T LINE L1 -1 6581 6360 1 1188 23 0 0 0 chr6 79126016 79126039 -70390998 + AT_rich Low_complexity Low_complexity 1 23 0 1 1188 314 348 45 0 chr6 79126052 79126164 -70390873 - RSINE1 SINE B4 -2 163 47 1 1188 47 82 0 0 chr6 79126357 79126467 -70390570 + AT_rich Low_complexity Low_complexity 1 110 0 1 1188 332 116 47 0 chr6 79127076 79127162 -70389875 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 1188 589 100 0 43 chr6 79127211 79127305 -70389732 + B1_Mm SINE Alu 53 142 -5 1 1188 297 109 0 0 chr6 79127305 79127351 -70389686 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1188 291 356 55 71 chr6 79127359 79127486 -70389551 + B3A SINE B2 36 160 -38 1 1188 351 264 15 7 chr6 79127447 79127484 -70389553 - B4 SINE B4 -84 208 117 1 1188 478 128 0 25 chr6 79127484 79127564 -70389473 - B1_Mus1 SINE Alu -65 83 6 1 1188 351 264 15 7 chr6 79127564 79127581 -70389456 - B4 SINE B4 -84 116 69 1 1188 609 61 0 0 chr6 79127581 79127663 -70389374 + (TC)n Simple_repeat Simple_repeat 1 82 0 1 1188 222 37 0 0 chr6 79127665 79127692 -70389345 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1188 22 56 0 0 chr6 79128208 79128244 -70388793 + AT_rich Low_complexity Low_complexity 1 36 0 1 1188 611 291 54 20 chr6 79128657 79128860 -70388177 + ORR1D2 LTR MaLR 161 370 0 1 1188 1394 192 118 29 chr6 79129668 79129974 -70387063 - MTC LTR MaLR -2 419 87 1 1188 1027 301 80 34 chr6 79130414 79131529 -70385508 - L1M2 LINE L1 -768 5532 4359 1 1188 10970 14 1 0 chr6 79131718 79133666 -70383371 - L1Md_A LINE L1 0 6582 4634 1 1188 717 280 119 36 chr6 79133784 79134287 -70382750 - L1M2 LINE L1 -2073 4067 3523 1 1188 668 258 24 48 chr6 79134365 79134573 -70382464 + B3 SINE B2 7 209 -7 1 1188 240 245 45 117 chr6 79134655 79134766 -70382271 - L1M2 LINE L1 -2751 3392 3290 1 1188 24 0 0 0 chr6 79134780 79134804 -70382233 + AT_rich Low_complexity Low_complexity 1 24 0 1 1188 2875 91 38 9 chr6 79135217 79135637 -70381400 - L1Md_F2 LINE L1 -11 6571 6140 1 1188 1977 49 203 34 chr6 79135637 79135933 -70381104 + ORR1A0 LTR MaLR 1 346 0 1 1188 834 64 4 7 chr6 79135933 79136058 -70380979 + ORR1A0-int LTR MaLR 1 122 -1136 1 1188 25183 94 17 21 chr6 79136058 79140571 -70376466 - L1Md_F LINE L1 -1018 4865 371 1 1188 702 235 50 50 chr6 79140615 79140893 -70376144 - Lx9 LINE L1 -2 7642 7365 1 1188 361 371 24 0 chr6 79140977 79141101 -70375936 - B1_Mur1 SINE Alu -8 141 15 1 1188 200 227 13 39 chr6 79141197 79141275 -70375762 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 1188 248 314 38 24 chr6 79141532 79141741 -70375296 - L1M2 LINE L1 -3817 2326 2115 1 1188 297 0 0 0 chr6 79141822 79141855 -70375182 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1188 214 395 67 7 chr6 79141949 79142084 -70374953 - B4A SINE B4 -145 147 5 1 1188 534 91 0 0 chr6 79142117 79142194 -70374843 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1188 1304 293 112 57 chr6 79142759 79143515 -70373522 - RLTR40 LTR ERVK -18 799 2 1 1188 2201 224 68 0 chr6 79143966 79144435 -70372602 + RLTR18B LTR ERVK 1 501 -11 1 1188 6854 74 4 6 chr6 79144902 79145921 -70371116 + L1Md_F LINE L1 366 1386 -4497 1 1188 4068 56 2 2 chr6 79145920 79146429 -70370608 + L1Md_F LINE L1 5077 5586 -297 1 1188 8208 46 0 0 chr6 79146429 79147425 -70369612 + L1Md_F2 LINE L1 5587 6582 0 1 1188 1206 0 0 0 chr6 79147941 79148075 -70368962 + (TTTCC)n Simple_repeat Simple_repeat 2 135 0 1 1188 666 0 0 0 chr6 79148078 79148152 -70368885 + (TCTCC)n Simple_repeat Simple_repeat 2 75 0 2 1188 347 91 0 0 chr6 79148637 79148692 -70368345 - L1_Mus2 LINE L1 0 6566 6512 2 1188 255 309 73 21 chr6 79148860 79148956 -70368081 + B2_Mm2 SINE B2 4 104 -91 2 1188 182 62 31 0 chr6 79149069 79149101 -70367936 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 2 1188 297 299 23 16 chr6 79149402 79149531 -70367506 - L1MEe LINE L1 -4570 284 155 2 1188 27 29 0 0 chr6 79150100 79150134 -70366903 + AT_rich Low_complexity Low_complexity 1 34 0 2 1188 785 79 0 9 chr6 79150333 79150448 -70366589 + (TG)n Simple_repeat Simple_repeat 2 115 0 2 1188 642 150 348 0 chr6 79151152 79151339 -70365698 + L1_Mur1 LINE L1 2950 3201 -2685 2 1188 5011 88 4 172 chr6 79151334 79152089 -70364948 - L1_Mur1 LINE L1 -508 5378 4682 2 1188 573 129 0 0 chr6 79152089 79152182 -70364855 - L1_Mus2 LINE L1 -1 6565 6473 2 1188 5011 88 4 172 chr6 79152182 79152226 -70364811 - L1_Mur1 LINE L1 -1205 4681 4681 2 1188 1356 94 5 0 chr6 79152226 79152418 -70364619 - L1_Mus1 LINE L1 -2 6565 6373 2 1188 5011 88 4 172 chr6 79152418 79152661 -70364376 - L1_Mur1 LINE L1 -1205 4681 4511 2 1188 6778 38 1 0 chr6 79152660 79153468 -70363569 - L1Md_A LINE L1 -37 6545 5737 2 1188 32159 35 3 8 chr6 79153465 79158155 -70358882 - L1Md_A LINE L1 -775 5108 449 2 1188 2636 136 2 84 chr6 79158156 79158677 -70358360 - L1_Mur1 LINE L1 -2739 3147 2670 2 1188 1171 187 151 0 chr6 79158677 79158955 -70358082 + L1_Mur1 LINE L1 3412 3731 -2155 2 1188 3010 130 0 2 chr6 79158955 79159425 -70357612 + L1_Mm LINE L1 4724 5192 -691 2 1188 477 50 0 0 chr6 79159447 79159507 -70357530 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 1188 4379 145 11 3 chr6 79159511 79160256 -70356781 - L1_Mur1 LINE L1 -1432 4454 3704 2 1188 7078 111 6 14 chr6 79160237 79161353 -70355684 - L1_Mus3 LINE L1 -5 6633 5525 2 1188 2907 153 148 8 chr6 79161351 79161945 -70355092 + L1_Mur1 LINE L1 4729 5405 -481 2 1188 2090 202 16 21 chr6 79161946 79162380 -70354657 + Lx3C LINE L1 6536 6967 -9 2 1188 572 295 102 47 chr6 79162870 79163105 -70353932 - MTEa LTR MaLR -7 372 125 2 1188 1460 204 40 142 chr6 79163135 79163530 -70353507 + RMER19C LTR ERVK 1 355 -256 2 1188 1072 170 168 13 chr6 79163558 79163796 -70353241 - RMER19C LTR ERVK -336 275 1 2 1188 1785 290 77 16 chr6 79163956 79164705 -70352332 - Tigger1 DNA MER2_type -8 2410 1616 2 1188 442 370 40 6 chr6 79164879 79165053 -70351984 + B4A SINE B4 1 180 -112 2 1188 342 0 0 0 chr6 79165259 79165297 -70351740 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1188 555 289 19 26 chr6 79165308 79165464 -70351573 - RSINE1 SINE B4 -1 164 10 2 1188 390 42 0 0 chr6 79166692 79166740 -70350297 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1188 219 367 0 12 chr6 79166790 79166870 -70350167 - B4 SINE B4 -213 79 1 2 1188 461 84 14 0 chr6 79167144 79167215 -70349822 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1188 377 331 36 42 chr6 79167215 79167407 -70349630 - B3 SINE B2 -24 192 2 2 1189 789 65 19 0 chr6 79167604 79167711 -70349326 + L1_Mur1 LINE L1 4434 4542 -1344 2 1189 705 341 65 8 chr6 79167867 79168254 -70348783 + Lx8 LINE L1 7053 7461 -12 2 1189 477 327 32 41 chr6 79168426 79168742 -70348295 - RLTR15 LTR ERVK -46 313 1 2 1189 450 314 7 172 chr6 79169180 79169476 -70347561 - MTD LTR MaLR -20 399 153 2 1189 7613 66 1 12 chr6 79170354 79171401 -70345636 - L1Md_F2 LINE L1 -12 6570 5541 2 1189 1298 347 86 23 chr6 79173444 79174320 -70342717 - Lx8 LINE L1 -202 7271 6341 2 1189 240 35 0 0 chr6 79174383 79174412 -70342625 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1189 360 314 66 39 chr6 79174413 79174595 -70342442 + MTEa LTR MaLR 193 379 0 2 1189 454 104 0 0 chr6 79174633 79174700 -70342337 - L1_Mur1 LINE L1 -459 5427 5361 2 1189 5214 41 0 2 chr6 79174701 79175331 -70341706 - L1Md_A LINE L1 0 6582 5954 2 1189 11255 24 0 0 chr6 79175331 79176711 -70340326 + L1Md_A LINE L1 4572 5951 -631 2 1189 862 105 18 47 chr6 79176724 79176894 -70340143 - Lx3A LINE L1 -515 5371 5207 2 1189 2460 139 0 0 chr6 79176896 79177262 -70339775 + Lx3A LINE L1 5428 5793 -93 2 1189 1065 42 0 14 chr6 79177263 79177409 -70339628 + L1Md_F2 LINE L1 6437 6580 -2 2 1189 441 0 0 0 chr6 79177420 79177469 -70339568 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1189 1287 166 5 5 chr6 79177578 79177802 -70339235 + Lx3A LINE L1 5783 6006 -967 2 1189 5024 128 13 5 chr6 79177795 79178559 -70338478 + Lx3A LINE L1 6205 6974 -7 2 1189 300 330 9 27 chr6 79178861 79178973 -70338064 - L1M5 LINE L1 -349 5815 5706 2 1189 311 253 0 0 chr6 79179218 79179309 -70337728 - L1M5 LINE L1 -725 5437 5347 2 1189 306 329 19 57 chr6 79179356 79179467 -70337570 - L1MD LINE L1 -858 5288 5178 2 1189 1461 46 0 0 chr6 79179467 79179642 -70337395 + B2_Mm1a SINE B2 1 175 -18 2 1189 306 329 19 57 chr6 79179642 79179688 -70337349 - L1MD LINE L1 -969 5177 5137 2 1189 384 190 0 0 chr6 79179736 79179815 -70337222 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 1189 498 33 0 0 chr6 79179948 79180008 -70337029 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1189 1934 107 10 10 chr6 79180375 79180668 -70336369 - L1_Mus4 LINE L1 -3 6633 6341 2 1189 423 0 0 0 chr6 79180687 79180734 -70336303 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1189 264 303 90 60 chr6 79180746 79181013 -70336024 - L1M5 LINE L1 -1489 4657 4383 2 1189 369 43 0 0 chr6 79181369 79181416 -70335621 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1189 22 56 0 0 chr6 79181642 79181678 -70335359 + AT_rich Low_complexity Low_complexity 1 36 0 2 1189 606 312 55 77 chr6 79181897 79182223 -70334814 + MTE2a LTR MaLR 56 374 -5 2 1189 209 389 14 35 chr6 79182233 79182377 -70334660 - MIR SINE MIR -121 141 1 2 1189 26 0 0 0 chr6 79182869 79182895 -70334142 + AT_rich Low_complexity Low_complexity 1 26 0 2 1189 243 351 63 31 chr6 79182941 79183100 -70333937 + MER45C DNA Tip100 31 194 -759 2 1189 759 225 0 48 chr6 79183197 79183365 -70333672 - Lx6 LINE L1 -933 6527 6368 2 1189 510 253 122 16 chr6 79183357 79183546 -70333491 + Lx7 LINE L1 7488 7696 0 2 1189 437 0 0 19 chr6 79183563 79183617 -70333420 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1189 382 353 35 12 chr6 79183620 79183789 -70333248 + B3 SINE B2 27 199 -17 2 1189 259 262 28 18 chr6 79184240 79184349 -70332688 - L1M3 LINE L1 -1556 4584 4475 2 1189 340 330 123 23 chr6 79184356 79184505 -70332532 + L1M2 LINE L1 5145 5303 -840 2 1189 225 94 0 0 chr6 79184505 79184537 -70332500 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2 1189 340 330 123 23 chr6 79184537 79184607 -70332430 + L1M2 LINE L1 5304 5386 -757 2 1189 593 380 77 30 chr6 79184912 79185316 -70331721 - MLT2B1 LTR ERVL -97 423 1 2 1189 3306 182 47 20 chr6 79185532 79186447 -70330590 - Lx2B LINE L1 -752 6248 5263 2 1189 234 0 0 0 chr6 79186447 79186473 -70330564 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1189 2867 193 115 2 chr6 79186473 79186565 -70330472 - Lx2B LINE L1 -615 5262 5170 2 1189 3281 196 55 38 chr6 79186564 79187280 -70329757 + Lx2B LINE L1 6273 7000 0 2 1189 653 351 66 8 chr6 79187510 79187768 -70329269 + B4A SINE B4 20 292 0 2 1189 25 31 0 0 chr6 79188356 79188388 -70328649 + AT_rich Low_complexity Low_complexity 1 32 0 2 1189 192 77 0 0 chr6 79188672 79188698 -70328339 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 2 1189 583 271 52 124 chr6 79188895 79189338 -70327699 + MERVL_2A-int LTR ERVL 5315 5725 -36 2 1189 369 380 32 68 chr6 79189473 79189724 -70327313 + MT2A LTR ERVL 153 394 -139 2 1189 921 298 25 17 chr6 79190080 79190438 -70326599 + MERVL_2A-int LTR ERVL 372 732 -5029 2 1189 230 314 29 0 chr6 79190892 79190962 -70326075 + RMER15 LTR ERVL 434 505 -70 2 1189 544 300 7 26 chr6 79191520 79191674 -70325363 - RSINE1 SINE B4 -10 155 5 2 1189 207 0 0 0 chr6 79192019 79192042 -70324995 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1189 944 276 51 54 chr6 79192552 79192592 -70324445 - ORR1C2-int LTR MaLR -23 1557 1523 2 1189 790 235 168 82 chr6 79192592 79192648 -70324389 - ORR1C2 LTR MaLR -2 382 321 2 1189 234 0 0 0 chr6 79192648 79192674 -70324363 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1189 790 235 168 82 chr6 79192674 79192817 -70324220 - ORR1C2 LTR MaLR -64 320 159 2 1189 315 0 0 0 chr6 79192817 79192852 -70324185 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1189 180 0 0 0 chr6 79192854 79192874 -70324163 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 1189 306 0 0 0 chr6 79192875 79192909 -70324128 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1189 790 235 168 82 chr6 79192909 79193055 -70323982 - ORR1C2 LTR MaLR -226 158 2 2 1189 3672 261 84 26 chr6 79193055 79194267 -70322770 - ORR1C2-int LTR MaLR -58 1522 90 2 1189 1233 229 103 42 chr6 79194274 79194634 -70322403 - ORR1C2 LTR MaLR -2 382 1 2 1189 347 227 11 33 chr6 79194634 79194725 -70322312 - ORR1C2-int LTR MaLR -1279 91 3 2 1189 866 213 308 20 chr6 79194727 79194908 -70322129 - ORR1C2 LTR MaLR 0 384 157 2 1189 513 0 0 0 chr6 79194908 79194965 -70322072 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1189 866 213 308 20 chr6 79194965 79195075 -70321962 - ORR1C2 LTR MaLR -228 156 9 2 1189 280 307 40 50 chr6 79195131 79195292 -70321745 - B3A SINE B2 0 216 11 2 1189 248 154 0 19 chr6 79195658 79195711 -70321326 + (TTA)n Simple_repeat Simple_repeat 2 53 0 2 1189 317 321 63 50 chr6 79195837 79196076 -70320961 + Lx8 LINE L1 7185 7426 -47 2 1189 1634 86 20 24 chr6 79196177 79196426 -70320611 + L1Md_F2 LINE L1 6334 6581 -1 2 1189 552 171 0 0 chr6 79196820 79196931 -70320106 + (TA)n Simple_repeat Simple_repeat 2 112 0 2 1189 931 40 97 0 chr6 79196939 79197063 -70319974 + B1_Mus1 SINE Alu 1 136 -12 2 1189 428 48 0 16 chr6 79197064 79197128 -70319909 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 2 1189 323 23 23 0 chr6 79197184 79197228 -70319809 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1189 1744 90 185 3 chr6 79197235 79197549 -70319488 - MTB LTR MaLR 0 400 30 2 1189 1758 142 20 3 chr6 79197549 79197852 -70319185 - L1_Mur2 LINE L1 -1977 3900 3593 2 1189 6391 158 14 3 chr6 79197853 79199157 -70317880 + Lx LINE L1 5338 6652 -2 2 1189 1250 49 6 0 chr6 79199494 79199656 -70317381 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 2 1189 194 91 30 0 chr6 79200619 79200652 -70316385 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2 1189 3337 40 2 0 chr6 79201288 79201683 -70315354 + MTA_Mm LTR MaLR 1 396 0 2 1189 25 75 0 0 chr6 79201802 79201855 -70315182 + AT_rich Low_complexity Low_complexity 1 53 0 2 1189 266 0 29 0 chr6 79202493 79202527 -70314510 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1189 288 349 45 18 chr6 79202964 79203075 -70313962 + B1F SINE Alu 34 147 -2 2 1189 208 182 23 0 chr6 79203304 79203348 -70313689 + (CAA)n Simple_repeat Simple_repeat 2 46 0 2 1189 233 342 0 0 chr6 79203571 79203647 -70313390 + PB1D7 SINE Alu 43 118 -2 2 1189 249 109 55 0 chr6 79204679 79204734 -70312303 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1189 659 34 0 22 chr6 79204758 79204849 -70312188 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 3 1189 794 203 97 21 chr6 79204849 79205035 -70312002 + ORR1C2 LTR MaLR 185 384 0 3 1189 27 0 0 0 chr6 79205123 79205150 -70311887 + AT_rich Low_complexity Low_complexity 1 27 0 3 1189 394 334 129 34 chr6 79206202 79206583 -70310454 + L1ME2 LINE L1 5561 5977 -187 3 1189 3539 122 142 14 chr6 79206639 79207336 -70309701 + L1_Mur2 LINE L1 3981 4766 -1111 3 1189 21 0 0 0 chr6 79207427 79207448 -70309589 + AT_rich Low_complexity Low_complexity 1 21 0 3 1189 208 121 0 0 chr6 79207469 79207502 -70309535 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1189 295 274 83 0 chr6 79207530 79207614 -70309423 + B3 SINE B2 85 175 -41 3 1189 3857 157 41 20 chr6 79207708 79207867 -70309170 + Lx LINE L1 5927 6084 -570 3 1189 2587 111 40 0 chr6 79207867 79208272 -70308765 + BGLII LTR ERVK 1 421 0 3 1189 3857 157 41 20 chr6 79208272 79208825 -70308212 + Lx LINE L1 6085 6653 -1 3 1189 2000 110 41 19 chr6 79209078 79209393 -70307644 - ORR1A2 LTR MaLR -5 322 1 3 1189 1826 186 114 20 chr6 79209447 79209842 -70307195 + RMER1B Other Other 618 1049 -17 3 1189 24 32 0 0 chr6 79209843 79209874 -70307163 + AT_rich Low_complexity Low_complexity 1 31 0 3 1189 222 37 0 0 chr6 79210503 79210530 -70306507 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1189 183 255 42 21 chr6 79211209 79211257 -70305780 - L4 LINE RTE -609 1420 1372 3 1189 185 323 43 0 chr6 79211657 79211750 -70305287 + MIRb SINE MIR 172 268 0 3 1189 1027 93 0 0 chr6 79212684 79212824 -70304213 + B1_Mus1 SINE Alu 8 147 -1 3 1189 323 78 0 19 chr6 79212845 79212897 -70304140 + (GAAA)n Simple_repeat Simple_repeat 3 53 0 3 1189 2748 19 28 0 chr6 79213034 79213352 -70303685 - IAPLTR2b LTR ERVK 0 327 1 3 1189 6264 68 12 5 chr6 79213354 79214175 -70302862 - IAPEz-int LTR ERVK -2 6479 5653 3 1189 2583 88 0 3 chr6 79214170 79214513 -70302524 - IAPEz-int LTR ERVK -4781 1700 1359 3 1189 3471 94 23 43 chr6 79214513 79215275 -70301762 - IAPEz-int LTR ERVK -5819 662 94 3 1189 1483 28 0 0 chr6 79215278 79215459 -70301578 - IAPLTR2b LTR ERVK -146 181 1 3 1189 242 354 94 8 chr6 79215899 79216027 -70301010 - B3 SINE B2 -28 188 50 3 1189 1336 208 12 18 chr6 79216553 79216881 -70300156 - Lx4B LINE L1 -811 6247 5922 3 1189 686 146 97 62 chr6 79216874 79216902 -70300135 - L1_Mur2 LINE L1 -1074 4803 4776 3 1189 1167 117 40 20 chr6 79216902 79217103 -70299934 - L1_Mus3 LINE L1 -2 6636 6432 3 1189 686 152 94 74 chr6 79217103 79217279 -70299758 - L1_Mur2 LINE L1 -1104 4776 4614 3 1189 2207 176 47 2 chr6 79217279 79217722 -70299315 - Lx3C LINE L1 0 6976 6514 3 1189 570 184 80 130 chr6 79217722 79217754 -70299283 - L1_Mur2 LINE L1 -1267 4613 4583 3 1189 754 220 13 1 chr6 79217749 79217918 -70299119 + L1_Mur2 LINE L1 4279 4476 -1664 3 1189 3063 140 30 2 chr6 79217928 79218423 -70298614 + Lx3B LINE L1 6458 6966 -7 3 1189 37 23 0 0 chr6 79218428 79218472 -70298565 + AT_rich Low_complexity Low_complexity 1 44 0 3 1189 293 151 35 11 chr6 79218956 79219043 -70297994 + CT-rich Low_complexity Low_complexity 1 89 0 3 1189 279 0 0 0 chr6 79219044 79219075 -70297962 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 1189 2094 8 0 0 chr6 79219204 79219442 -70297595 - L1Md_A LINE L1 0 6582 6345 3 1189 30154 13 0 10 chr6 79219442 79223741 -70293296 - L1Md_A LINE L1 -1169 4714 465 3 1189 1075 78 43 0 chr6 79224064 79224205 -70292832 + B1_Mm SINE Alu 1 147 0 3 1189 557 112 30 24 chr6 79224207 79224372 -70292665 + A-rich Low_complexity Low_complexity 3 168 0 3 1189 536 42 14 0 chr6 79224390 79224461 -70292576 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1189 183 42 0 0 chr6 79224461 79224484 -70292553 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 1189 23 68 0 0 chr6 79224790 79224834 -70292203 + AT_rich Low_complexity Low_complexity 1 44 0 3 1189 423 0 0 0 chr6 79224853 79224900 -70292137 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1189 219 88 0 0 chr6 79226453 79226487 -70290550 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1189 2065 192 2 16 chr6 79227111 79227588 -70289449 - Lx7 LINE L1 -1781 5915 5448 3 1189 294 73 0 0 chr6 79227589 79227630 -70289407 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1189 36232 31 1 1 chr6 79227781 79234687 -70282350 - L1Md_T LINE L1 0 6585 1 3 1189 3022 144 127 16 chr6 79234702 79234764 -70282273 - Lx3A LINE L1 -10 6971 6917 3 1189 2347 133 39 5 chr6 79234764 79235172 -70281865 - BGLII_Mus LTR ERVK 0 422 1 3 1189 3022 144 127 16 chr6 79235172 79235715 -70281322 - Lx3A LINE L1 -65 6916 6299 3 1189 3117 134 14 28 chr6 79235718 79236288 -70280749 + Lx3_Mus LINE L1 5730 6291 -718 3 1189 828 154 0 0 chr6 79236287 79236436 -70280601 - L1_Mur1 LINE L1 -422 5464 5316 3 1189 2669 117 22 0 chr6 79236433 79236845 -70280192 - Lx LINE L1 -305 6349 5929 3 1189 6163 145 32 1 chr6 79236849 79238078 -70278959 + Lx LINE L1 5386 6654 0 3 1189 712 246 57 80 chr6 79238170 79238470 -70278567 + Lx8 LINE L1 7179 7471 -2 3 1189 378 384 97 6 chr6 79239172 79239337 -70277700 - B4A SINE B4 -12 280 101 3 1189 519 342 31 57 chr6 79241478 79241670 -70275367 - B3A SINE B2 -10 188 2 3 1189 28 0 0 0 chr6 79242703 79242731 -70274306 + AT_rich Low_complexity Low_complexity 1 28 0 3 1189 1795 196 82 185 chr6 79242909 79243399 -70273638 + RMER6C LTR ERVK 1 387 -303 3 1189 1254 51 0 22 chr6 79243399 79243581 -70273456 + (GGGAGA)n Simple_repeat Simple_repeat 2 179 0 3 1189 1795 196 82 185 chr6 79243581 79243846 -70273191 + RMER6C LTR ERVK 388 678 -12 3 1189 1768 80 4 4 chr6 79243930 79244193 -70272844 - L1_Mus3 LINE L1 -525 6113 5851 3 1189 1082 111 11 27 chr6 79244195 79244381 -70272656 + L1_Mus3 LINE L1 6456 6638 0 3 1189 2626 81 3 6 chr6 79244433 79244780 -70272257 - ORR1A1 LTR MaLR 0 346 1 3 1189 498 333 19 7 chr6 79246049 79246203 -70270834 - RSINE1 SINE B4 -8 157 2 3 1189 3246 47 3 0 chr6 79246251 79246635 -70270402 - IAPEY_LTR LTR ERVK 0 385 1 3 1189 782 116 8 0 chr6 79246805 79246934 -70270103 + (TA)n Simple_repeat Simple_repeat 1 130 0 3 1189 236 286 14 14 chr6 79246934 79247000 -70270037 + ORR1B1 LTR MaLR 1 67 -327 3 1189 1472 210 4 4 chr6 79247024 79247287 -70269750 + ORR1B1 LTR MaLR 124 386 -8 3 1189 3234 224 69 25 chr6 79247291 79247377 -70269660 + ORR1B1-int LTR MaLR 1 87 -1422 3 1189 7610 49 12 0 chr6 79247377 79248238 -70268799 + L1Md_F2 LINE L1 5626 6491 -91 3 1189 3185 57 3 0 chr6 79248238 79248622 -70268415 + IAPEY_LTR LTR ERVK 1 385 0 3 1189 7610 49 12 0 chr6 79248622 79248706 -70268331 + L1Md_F2 LINE L1 6492 6581 -1 3 1189 3234 224 69 25 chr6 79248706 79249493 -70267544 + ORR1B1-int LTR MaLR 88 912 -597 3 1189 283 136 0 0 chr6 79249486 79249530 -70267507 + ORR1B1 LTR MaLR 286 329 0 3 1189 274 292 0 0 chr6 79249728 79249793 -70267244 - RSINE1 SINE B4 -42 123 59 3 1189 30 59 0 0 chr6 79250052 79250103 -70266934 + AT_rich Low_complexity Low_complexity 1 51 0 3 1189 180 152 0 0 chr6 79250741 79250774 -70266263 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 3 1189 368 104 15 0 chr6 79250774 79250841 -70266196 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 3 1189 479 218 58 8 chr6 79250849 79250985 -70266052 + Lx6 LINE L1 6930 7060 -400 3 1189 893 286 11 18 chr6 79250990 79251271 -70265766 + Lx6 LINE L1 7167 7445 -15 3 1189 551 248 40 24 chr6 79251640 79251764 -70265273 + RSINE1 SINE B4 3 128 -37 3 1189 636 14 0 0 chr6 79251792 79251865 -70265172 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1189 21 82 0 0 chr6 79251872 79251921 -70265116 + AT_rich Low_complexity Low_complexity 1 49 0 3 1189 1636 32 0 0 chr6 79251930 79252116 -70264921 + B2_Mm1t SINE B2 2 187 -6 3 1189 630 252 14 0 chr6 79252291 79252430 -70264607 + Lx6 LINE L1 7206 7346 -114 3 1189 2569 127 10 0 chr6 79252554 79252949 -70264088 + L1_Mus4 LINE L1 6231 6629 -7 3 1189 439 331 52 0 chr6 79252968 79253140 -70263897 - B3A SINE B2 -17 181 1 3 1189 305 333 11 0 chr6 79253288 79253378 -70263659 + RSINE1 SINE B4 13 103 -62 3 1189 21 57 0 0 chr6 79254277 79254312 -70262725 + AT_rich Low_complexity Low_complexity 1 35 0 3 1189 361 322 88 22 chr6 79254808 79254989 -70262048 + B3 SINE B2 13 205 -11 3 1189 288 0 0 0 chr6 79255716 79255748 -70261289 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 3 1189 492 260 16 16 chr6 79256059 79256184 -70260853 + B3 SINE B2 6 130 -86 3 1189 25 75 0 0 chr6 79256521 79256574 -70260463 + AT_rich Low_complexity Low_complexity 1 53 0 3 1189 33447 50 9 0 chr6 79257049 79262371 -70254666 + L1Md_F2 LINE L1 103 5475 -408 3 1189 3781 34 0 0 chr6 79263287 79263733 -70253304 - L1Md_A LINE L1 -1 6581 6136 3 1189 404 214 9 0 chr6 79263912 79264024 -70253013 + (TA)n Simple_repeat Simple_repeat 1 113 0 3 1189 410 89 0 0 chr6 79264310 79264366 -70252671 + L1Md_F2 LINE L1 5531 5586 -297 3 1189 7970 53 4 0 chr6 79264368 79265357 -70251680 + L1Md_F2 LINE L1 5589 6581 -1 3 1189 736 304 31 39 chr6 79265382 79265639 -70251398 + Lx5 LINE L1 6795 7049 -1 3 1189 223 162 37 24 chr6 79266653 79266735 -70250302 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 3 1189 405 259 39 87 chr6 79266761 79266888 -70250149 - B3A SINE B2 -13 203 83 3 1189 337 314 26 111 chr6 79266996 79267222 -70249815 - B3 SINE B2 -5 211 5 3 1189 400 55 68 0 chr6 79267537 79267610 -70249427 + (GTTTG)n Simple_repeat Simple_repeat 1 78 0 3 1189 3529 10 5 0 chr6 79268070 79268464 -70248573 - MTA_Mm LTR MaLR 0 396 1 3 1189 5573 33 27 0 chr6 79268464 79269168 -70247869 - MTA_Mm-int LTR MaLR 0 1098 376 3 1189 6563 95 2 45 chr6 79269168 79271018 -70246019 - L1Md_F LINE L1 -3739 2144 379 3 1189 2871 199 9 7 chr6 79271058 79271610 -70245427 - Lx4A LINE L1 0 7058 6506 3 1189 2123 87 6 19 chr6 79271610 79271927 -70245110 - L1Md_F2 LINE L1 0 6582 6270 3 1189 533 150 0 74 chr6 79271929 79272037 -70245000 - Lx4B LINE L1 -557 6501 6402 3 1189 393 142 18 45 chr6 79272032 79272143 -70244894 - Lx4A LINE L1 -920 6138 6031 3 1189 3480 137 56 46 chr6 79272139 79272874 -70244163 - L1_Mur2 LINE L1 -3625 2252 1511 3 1189 490 304 127 40 chr6 79272883 79273136 -70243901 + RLTR16 LTR ERVK 24 298 -207 3 1189 754 238 19 0 chr6 79273215 79273421 -70243616 - L1_Mur2 LINE L1 -6322 390 181 3 1189 628 355 14 48 chr6 79273422 79273715 -70243322 + MTE2a LTR MaLR 78 360 -19 3 1189 270 0 0 0 chr6 79273734 79273764 -70243273 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1189 223 359 0 0 chr6 79274177 79274241 -70242796 + ID4 SINE ID 3 66 -17 3 1189 246 363 54 7 chr6 79274350 79274497 -70242540 + MTEb LTR MaLR 1 154 -225 3 1189 246 300 17 0 chr6 79274628 79274688 -70242349 + MER76 LTR ERVL 70 130 -561 4 1189 206 233 0 0 chr6 79274711 79274754 -70242283 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1189 363 116 12 98 chr6 79275888 79276051 -70240986 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 4 1189 945 118 0 0 chr6 79276062 79276231 -70240806 + (GA)n Simple_repeat Simple_repeat 2 170 0 4 1189 384 22 0 0 chr6 79277622 79277667 -70239370 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1189 4988 86 3 29 chr6 79277910 79278630 -70238407 - L1_Mus2 LINE L1 0 6566 5866 4 1189 189 0 0 0 chr6 79278957 79278978 -70238059 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1189 240 314 88 8 chr6 79279586 79279711 -70237326 + RMER15 LTR ERVL 422 556 -19 4 1189 278 258 20 10 chr6 79280028 79280126 -70236911 - L1M6 LINE L1 -5455 1041 943 4 1189 373 375 97 5 chr6 79280516 79280701 -70236336 - B4A SINE B4 -8 284 83 4 1189 467 319 94 43 chr6 79280769 79281542 -70235495 - L1M4 LINE L1 -1577 5067 4255 4 1189 753 43 0 0 chr6 79281571 79281664 -70235373 + (TTTTG)n Simple_repeat Simple_repeat 2 94 0 4 1189 1117 65 0 0 chr6 79281664 79281802 -70235235 - B1_Mus2 SINE Alu -8 139 2 4 1189 568 279 85 51 chr6 79282771 79283299 -70233738 - L1M4 LINE L1 -3476 3168 2623 4 1189 524 303 86 0 chr6 79284432 79284607 -70232430 - B3A SINE B2 -8 190 1 4 1189 550 339 71 21 chr6 79284946 79285425 -70231612 - L1M4 LINE L1 -5744 798 296 4 1189 25 51 0 0 chr6 79285455 79285494 -70231543 + AT_rich Low_complexity Low_complexity 1 39 0 4 1189 652 312 29 0 chr6 79285505 79285713 -70231324 + B3 SINE B2 2 215 -1 4 1189 415 258 16 0 chr6 79285793 79285917 -70231120 - L1MA8 LINE L1 -155 6136 6011 4 1189 366 270 161 73 chr6 79286019 79286486 -70230551 - L1MA8 LINE L1 -190 6101 5594 4 1189 402 344 176 62 chr6 79286500 79286807 -70230230 + ORR1E LTR MaLR 2 343 -16 4 1189 635 294 39 24 chr6 79286865 79287071 -70229966 - B3 SINE B2 -6 210 2 4 1189 877 18 26 0 chr6 79287077 79287191 -70229846 + (TAGA)n Simple_repeat Simple_repeat 1 117 0 4 1189 444 141 3 0 chr6 79287293 79287375 -70229662 - L1_Mm LINE L1 -2417 3460 3381 4 1189 968 94 0 0 chr6 79287371 79287509 -70229528 - MusHAL1 LINE L1 -867 1845 1708 4 1189 5161 70 1 12 chr6 79287577 79287605 -70229432 - L1Md_F2 LINE L1 -1 6581 6561 4 1189 351 0 0 0 chr6 79287605 79287644 -70229393 + (TTA)n Simple_repeat Simple_repeat 1 39 0 4 1189 5161 70 1 12 chr6 79287644 79288304 -70228733 - L1Md_F2 LINE L1 -22 6560 5901 4 1189 16414 86 2 4 chr6 79288304 79291173 -70225864 - L1Md_Gf LINE L1 -2363 3523 563 4 1189 843 148 0 0 chr6 79291166 79291301 -70225736 - L1Md_Gf LINE L1 -6282 337 203 4 1189 9459 88 0 0 chr6 79291301 79292624 -70224413 - L1_Mm LINE L1 -2959 2924 1602 4 1189 18680 57 0 0 chr6 79292622 79295054 -70221983 + L1Md_F2 LINE L1 3501 5932 -650 4 1189 3295 59 12 0 chr6 79295054 79295480 -70221557 + L1Md_F2 LINE L1 6151 6581 -1 4 1189 263 125 0 0 chr6 79295822 79295862 -70221175 - Lx7 LINE L1 -948 6748 6709 4 1189 1737 210 52 13 chr6 79295862 79296243 -70220794 - MTB_Mm-int LTR MaLR -861 397 2 4 1189 2163 175 28 13 chr6 79296261 79296654 -70220383 - MTB_Mm LTR MaLR -8 399 1 4 1189 419 306 29 0 chr6 79297801 79297974 -70219063 + L1_Mur3 LINE L1 2556 2733 -3147 4 1189 291 274 0 0 chr6 79298065 79298138 -70218899 + L1_Mm LINE L1 4499 4571 -1312 4 1189 291 98 32 16 chr6 79298246 79298308 -70218729 + (TTTTTG)n Simple_repeat Simple_repeat 2 64 0 4 148 280 332 28 28 chr6 79298395 79298646 -70218391 - L1M2 LINE L1 -3084 3059 2809 4 1190 24 0 0 0 chr6 79298718 79298742 -70218295 + AT_rich Low_complexity Low_complexity 1 24 0 4 1190 490 279 55 24 chr6 79298801 79298966 -70218071 - B3 SINE B2 0 216 47 4 1190 182 65 0 61 chr6 79299299 79299332 -70217705 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 4 1190 2675 170 59 23 chr6 79299681 79300241 -70216796 + RMER6C LTR ERVK 111 690 0 4 1190 5424 175 10 14 chr6 79301321 79301372 -70215665 + L1_Mur1 LINE L1 2280 2326 -3560 4 1190 336 0 0 0 chr6 79301372 79301418 -70215619 - L1Md_T LINE L1 -1 6581 6536 4 1190 5424 175 10 14 chr6 79301418 79301570 -70215467 + L1_Mur1 LINE L1 2327 2478 -3408 4 1190 185 0 0 39 chr6 79301570 79301596 -70215441 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4 1190 5424 175 10 14 chr6 79301596 79302493 -70214544 + L1_Mur1 LINE L1 2479 3375 -2511 4 1190 1057 168 92 20 chr6 79302478 79302727 -70214310 + L1_Mur1 LINE L1 4723 4989 -888 4 1190 1009 256 106 8 chr6 79302725 79303073 -70213964 + Lx3C LINE L1 6602 7000 0 4 1190 281 302 40 65 chr6 79303470 79303594 -70213443 - RMER12 LTR ERVK -469 853 733 4 1190 1181 74 0 0 chr6 79303953 79304101 -70212936 + B1_Mus1 SINE Alu 1 148 0 4 1190 295 245 11 79 chr6 79304455 79304632 -70212405 + CT-rich Low_complexity Low_complexity 1 165 0 4 1190 23 68 0 0 chr6 79305236 79305280 -70211757 + AT_rich Low_complexity Low_complexity 1 44 0 4 1190 21 57 0 0 chr6 79305788 79305823 -70211214 + AT_rich Low_complexity Low_complexity 1 35 0 4 1190 266 247 0 38 chr6 79306636 79306716 -70210321 + CT-rich Low_complexity Low_complexity 2 78 0 4 1190 1706 208 33 3 chr6 79306934 79307266 -70209771 + RLTR28 LTR ERVL 1 342 -182 4 1190 336 286 133 0 chr6 79307273 79307378 -70209659 - MTD LTR MaLR -55 364 246 4 1190 532 212 223 6 chr6 79307378 79307535 -70209502 + URR1B DNA MER1_type 1 191 -34 4 1190 1745 67 12 19 chr6 79307668 79307925 -70209112 + L1_Mus2 LINE L1 6310 6564 -2 4 1190 216 311 55 64 chr6 79308138 79308248 -70208789 + B1_Mur3 SINE Alu 30 138 -11 4 1190 608 244 0 36 chr6 79308981 79309121 -70207916 + B1_Mur1 SINE Alu 3 137 -12 4 1190 201 178 22 0 chr6 79309259 79309304 -70207733 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 4 1190 1255 242 73 32 chr6 79309321 79309692 -70207345 + Lx6 LINE L1 7068 7453 -7 4 1190 240 237 0 41 chr6 79310804 79310927 -70206110 + (CATA)n Simple_repeat Simple_repeat 2 119 0 4 1190 1741 231 21 12 chr6 79311003 79311414 -70205623 + MTD LTR MaLR 3 405 -14 4 1190 751 272 82 4 chr6 79311672 79311905 -70205132 + RMER5 LTR ERV1 200 450 -84 4 1190 183 156 0 0 chr6 79313574 79313606 -70203431 + (TTA)n Simple_repeat Simple_repeat 1 32 0 4 1190 293 341 29 36 chr6 79313619 79313756 -70203281 - ID_B1 SINE B4 -1 223 88 4 1190 994 117 0 0 chr6 79314059 79314196 -70202841 + B1_Mus1 SINE Alu 3 139 -9 4 1190 642 26 0 0 chr6 79314196 79314272 -70202765 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 1190 1919 159 12 3 chr6 79314683 79315011 -70202026 + L1_Mus4 LINE L1 6303 6633 -3 4 1190 216 196 0 0 chr6 79315467 79315513 -70201524 + T-rich Low_complexity Low_complexity 1 46 0 4 1190 8294 118 20 31 chr6 79315516 79317018 -70200019 - Lx3_Mus LINE L1 -2 7007 5530 4 1190 400 252 19 9 chr6 79317024 79317132 -70199905 + RLTR15 LTR ERVK 1 109 -250 4 1190 534 298 8 0 chr6 79317897 79318021 -70199016 + B3A SINE B2 4 128 -70 4 1190 5140 217 128 43 chr6 79318821 79320484 -70196553 + L1_Mur3 LINE L1 1230 3108 -2772 4 1190 315 0 0 0 chr6 79320484 79320519 -70196518 + (TAA)n Simple_repeat Simple_repeat 1 35 0 4 1190 1172 62 14 0 chr6 79320523 79320669 -70196368 + B1_Mus1 SINE Alu 1 148 0 4 1190 5140 217 128 43 chr6 79320669 79320953 -70196084 + L1_Mur3 LINE L1 3109 3348 -2532 4 1190 2641 163 59 31 chr6 79320938 79321273 -70195764 + L1_Mur3 LINE L1 4136 4476 -1401 4 1190 2675 31 8 209 chr6 79321273 79321761 -70195276 + RLTR10 LTR ERVK 1 390 0 4 1190 2641 163 59 31 chr6 79321761 79322000 -70195037 + L1_Mur3 LINE L1 4477 4726 -1151 4 1190 35339 37 0 0 chr6 79322747 79327880 -70189157 + L1Md_T LINE L1 360 5589 -297 4 1190 8915 8 0 0 chr6 79327880 79328876 -70188161 + L1Md_T LINE L1 5590 6585 0 4 1190 740 312 37 51 chr6 79329477 79329771 -70187266 + B4A SINE B4 3 292 0 4 1190 309 172 0 0 chr6 79329936 79330000 -70187037 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 4 1190 283 356 34 20 chr6 79331373 79331522 -70185515 + RSINE1 SINE B4 1 151 -14 4 1190 198 0 0 0 chr6 79331696 79331718 -70185319 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1190 654 329 13 0 chr6 79331915 79332067 -70184970 + RSINE1 SINE B4 10 163 -2 4 1190 315 0 0 0 chr6 79332903 79332938 -70184099 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 4 1190 21 0 0 0 chr6 79333011 79333032 -70184005 + AT_rich Low_complexity Low_complexity 1 21 0 4 1190 3258 82 37 15 chr6 79333039 79333498 -70183539 - L1_Mus2 LINE L1 -1 6565 6097 4 1190 21 0 0 0 chr6 79333837 79333858 -70183179 + AT_rich Low_complexity Low_complexity 1 21 0 4 1190 257 362 43 80 chr6 79333861 79333999 -70183038 + B4 SINE B4 84 216 -76 4 1190 327 49 0 0 chr6 79334059 79334100 -70182937 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1190 408 168 20 10 chr6 79334106 79334208 -70182829 + GA-rich Low_complexity Low_complexity 2 104 0 4 1190 660 315 5 27 chr6 79334422 79334608 -70182429 + B3 SINE B2 5 186 -30 4 1190 27 62 0 0 chr6 79335008 79335056 -70181981 + AT_rich Low_complexity Low_complexity 1 48 0 4 1190 24 0 0 0 chr6 79335375 79335399 -70181638 + AT_rich Low_complexity Low_complexity 1 24 0 4 1190 510 17 0 0 chr6 79335440 79335499 -70181538 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1190 1444 180 58 77 chr6 79335603 79335807 -70181230 - RMER17C LTR ERVK 0 410 195 4 1190 362 21 21 0 chr6 79335807 79335854 -70181183 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1190 1444 180 58 77 chr6 79335854 79335928 -70181109 - RMER17C LTR ERVK -216 194 130 4 1190 2109 176 7 17 chr6 79335928 79336344 -70180693 + Lx LINE L1 6243 6654 0 4 1190 1444 180 58 77 chr6 79336344 79336480 -70180557 - RMER17C LTR ERVK -281 129 3 4 1190 438 114 0 0 chr6 79336620 79336690 -70180347 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1190 429 20 0 0 chr6 79336690 79336739 -70180298 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1190 984 295 104 27 chr6 79336747 79337189 -70179848 - RMER5 LTR ERV1 -54 480 5 4 1190 405 220 40 45 chr6 79337316 79337492 -70179545 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 4 1190 222 37 0 0 chr6 79337592 79337619 -70179418 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 1190 263 310 14 0 chr6 79338124 79338195 -70178842 - PB1D7 SINE Alu -1 119 48 4 1190 216 0 0 0 chr6 79338596 79338620 -70178417 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 4 1190 277 355 34 40 chr6 79339181 79339357 -70177680 + B4A SINE B4 1 175 -117 4 1190 369 0 0 0 chr6 79339521 79339562 -70177475 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 4 1190 331 286 9 0 chr6 79341780 79341885 -70175152 + (TA)n Simple_repeat Simple_repeat 1 106 0 5 1190 688 288 55 23 chr6 79341886 79342142 -70174895 - RMER15-int LTR ERVL -4073 926 663 5 1190 452 33 33 0 chr6 79342160 79342221 -70174816 + (GAAAA)n Simple_repeat Simple_repeat 2 64 0 5 1190 465 169 12 0 chr6 79342664 79342747 -70174290 + ORR1D1 LTR MaLR 297 380 -4 5 1190 907 256 12 16 chr6 79342751 79342997 -70174040 + ORR1D1-int LTR MaLR 1 245 -1264 5 1190 2944 214 30 18 chr6 79343033 79343595 -70173442 - Lx5 LINE L1 -788 6262 5690 5 1190 1879 167 161 21 chr6 79343595 79344018 -70173019 - RLTR45 LTR ERVK 0 482 1 5 1190 2944 169 17 29 chr6 79344018 79344346 -70172691 - Lx5 LINE L1 -1361 5689 5367 5 1190 2693 246 48 25 chr6 79344353 79345019 -70172018 + Lx5 LINE L1 6281 6961 -89 5 1190 1766 206 30 79 chr6 79345035 79345440 -70171597 - RLTR41 LTR ERV1 0 446 62 5 1190 426 121 0 0 chr6 79345560 79345626 -70171411 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1190 3511 238 43 109 chr6 79345626 79346765 -70170272 + ORR1D1-int LTR MaLR 1 1936 -27 5 1190 379 198 163 0 chr6 79346765 79346851 -70170186 + ORR1D1 LTR MaLR 285 384 0 5 1190 336 200 0 0 chr6 79346876 79346946 -70170091 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1190 279 56 56 0 chr6 79347024 79347078 -70169959 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 5 1190 228 127 55 0 chr6 79347087 79347142 -70169895 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1190 378 0 0 0 chr6 79347142 79347184 -70169853 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 5 1190 353 125 0 30 chr6 79347262 79347328 -70169709 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 5 1190 222 250 52 29 chr6 79347498 79347634 -70169403 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 5 1190 371 326 97 28 chr6 79348023 79348168 -70168869 + MER5A DNA MER1_type 31 185 -4 5 1190 545 273 53 0 chr6 79348330 79348462 -70168575 - RSINE1 SINE B4 -25 140 2 5 1190 278 350 137 8 chr6 79350171 79350295 -70166742 + B3A SINE B2 14 153 -45 5 1190 488 100 0 12 chr6 79350309 79350390 -70166647 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1190 791 331 52 7 chr6 79350488 79350798 -70166239 + MTE2a LTR MaLR 15 338 -41 5 1190 751 182 46 28 chr6 79350852 79351049 -70165988 - ORR1C2 LTR MaLR -2 382 111 5 1190 790 232 16 88 chr6 79351049 79351299 -70165738 - RLTR9A LTR ERVK 0 368 137 5 1190 195 42 0 0 chr6 79351930 79351954 -70165083 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1190 300 161 0 0 chr6 79352492 79352554 -70164483 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1190 426 308 66 47 chr6 79353317 79353528 -70163509 + B3 SINE B2 2 216 0 5 1190 867 297 5 5 chr6 79353608 79353818 -70163219 - B3 SINE B2 0 216 7 5 1190 874 50 0 16 chr6 79354811 79354933 -70162104 + (TTC)n Simple_repeat Simple_repeat 2 121 0 5 1190 1121 79 0 0 chr6 79354935 79355075 -70161962 - B1_Mus1 SINE Alu -7 141 2 5 1190 1123 123 6 0 chr6 79355075 79355237 -70161800 - B2_Mm1t SINE B2 -26 167 5 5 1190 522 31 0 0 chr6 79356357 79356421 -70160616 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1190 180 77 0 0 chr6 79356423 79356449 -70160588 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 5 1190 291 54 0 0 chr6 79356479 79356516 -70160521 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1190 27 0 0 0 chr6 79356571 79356598 -70160439 + AT_rich Low_complexity Low_complexity 1 27 0 5 1190 21 0 0 0 chr6 79356749 79356770 -70160267 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 371 285 55 109 chr6 79356840 79357041 -70159996 + B3A SINE B2 2 191 -7 5 1190 182 108 54 0 chr6 79357179 79357216 -70159821 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 5 1190 2451 233 39 7 chr6 79357256 79357796 -70159241 - Lx5 LINE L1 0 7050 6494 5 1190 25 0 0 0 chr6 79357796 79357821 -70159216 + AT_rich Low_complexity Low_complexity 1 25 0 5 1190 3589 68 14 18 chr6 79358083 79358581 -70158456 + LTRIS2 LTR ERV1 69 564 0 5 1190 954 262 87 38 chr6 79360216 79360541 -70156496 - ORR1E LTR MaLR -1 378 9 5 1190 483 356 67 49 chr6 79360950 79361396 -70155641 + Lx8 LINE L1 6807 7260 -213 5 1190 1259 251 55 35 chr6 79362101 79362484 -70154553 - MTD LTR MaLR -2 417 5 5 1190 827 283 78 17 chr6 79363248 79363556 -70153481 - ORR1E LTR MaLR -3 376 27 5 1190 989 285 48 55 chr6 79363559 79363889 -70153148 + ORR1D2 LTR MaLR 1 328 -42 5 1190 1294 220 111 7 chr6 79363891 79364197 -70152840 + MTC LTR MaLR 3 340 -81 5 1190 1403 202 66 76 chr6 79364524 79364904 -70152133 - ORR1C1 LTR MaLR -2 376 1 5 1190 376 298 140 26 chr6 79365099 79365292 -70151745 - B3 SINE B2 0 216 2 5 1190 1099 96 7 0 chr6 79365574 79365720 -70151317 - B1_Mus2 SINE Alu 0 147 1 5 1190 2858 86 15 2 chr6 79367043 79367438 -70149599 + MTB LTR MaLR 1 400 0 5 1190 200 211 19 0 chr6 79368473 79368525 -70148512 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 5 1190 623 204 0 0 chr6 79368551 79368659 -70148378 + MTD LTR MaLR 13 120 -299 5 1190 3925 127 19 36 chr6 79368661 79369329 -70147708 - Lx LINE L1 0 6654 5998 5 1190 258 32 0 0 chr6 79369331 79369362 -70147675 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1190 37653 46 0 3 chr6 79369380 79375762 -70141275 - L1Md_T LINE L1 0 6585 126 5 1190 1533 220 16 53 chr6 79375764 79376086 -70140951 + MTD LTR MaLR 110 419 0 5 1190 268 295 61 94 chr6 79376312 79376525 -70140512 + L1MB2 LINE L1 5380 5585 -598 5 1190 387 280 122 48 chr6 79376588 79377020 -70140017 + L1MB2 LINE L1 5706 6168 -3 5 1190 510 288 175 35 chr6 79377958 79378472 -70138565 + L1M4 LINE L1 3130 3715 -2431 5 1190 338 316 96 31 chr6 79378857 79379104 -70137933 + L1MB8 LINE L1 5903 6166 -8 5 1190 234 91 0 0 chr6 79379711 79379744 -70137293 + (TAA)n Simple_repeat Simple_repeat 1 33 0 5 1190 384 286 0 0 chr6 79380255 79380353 -70136684 - RSINE1 SINE B4 -36 129 32 5 1190 329 387 0 0 chr6 79380347 79380471 -70136566 + B3A SINE B2 27 150 -48 5 1190 1088 50 0 0 chr6 79380569 79380708 -70136329 - B1_Mm SINE Alu 0 147 9 5 1190 232 260 51 25 chr6 79381478 79381557 -70135480 - L1M5 LINE L1 -1036 5110 5030 5 1190 375 23 0 0 chr6 79381665 79381709 -70135328 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1190 607 372 49 19 chr6 79381742 79382008 -70135029 - B4 SINE B4 -11 281 8 5 1190 25 31 0 0 chr6 79382025 79382057 -70134980 + AT_rich Low_complexity Low_complexity 1 32 0 5 1190 264 348 27 0 chr6 79382463 79382575 -70134462 - L1M5 LINE L1 -1973 4173 4059 5 1190 309 296 81 12 chr6 79382617 79382778 -70134259 - L1M5 LINE L1 -2092 4054 3883 5 1190 24 32 0 0 chr6 79382837 79382868 -70134169 + AT_rich Low_complexity Low_complexity 1 31 0 5 1190 278 328 109 78 chr6 79385097 79385289 -70131748 + B3A SINE B2 1 198 0 5 1190 213 108 0 0 chr6 79385516 79385553 -70131484 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1190 22 0 0 0 chr6 79386190 79386212 -70130825 + AT_rich Low_complexity Low_complexity 1 22 0 5 1190 265 321 34 43 chr6 79386316 79386433 -70130604 + B3 SINE B2 100 215 -1 5 1190 25351 118 31 4 chr6 79386470 79390793 -70126244 + L1_Mus3 LINE L1 864 5234 -649 5 1190 195 42 0 0 chr6 79390793 79390817 -70126220 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 1190 25351 102 19 2 chr6 79390817 79392118 -70124919 + L1_Mus3 LINE L1 5235 6633 -5 5 1190 862 292 24 4 chr6 79392120 79392374 -70124663 + Lx6 LINE L1 7020 7278 -182 5 1190 247 333 43 9 chr6 79392434 79392549 -70124488 + Lx7 LINE L1 7189 7307 -389 5 1190 243 221 0 34 chr6 79392549 79392638 -70124399 + T-rich Low_complexity Low_complexity 4 89 0 5 1190 28 29 0 0 chr6 79392763 79392798 -70124239 + AT_rich Low_complexity Low_complexity 1 35 0 5 1190 3096 105 15 2 chr6 79392880 79393337 -70123700 + L1_Mus3 LINE L1 6169 6631 -7 5 1190 23 0 0 0 chr6 79393864 79393887 -70123150 + AT_rich Low_complexity Low_complexity 1 23 0 5 1190 425 323 65 65 chr6 79394489 79394627 -70122410 + MTEb LTR MaLR 10 159 -220 5 1190 2837 60 39 5 chr6 79394627 79395010 -70122027 - MTA_Mm LTR MaLR 0 396 1 5 1190 425 323 65 65 chr6 79395010 79395086 -70121951 + MTEb LTR MaLR 160 224 -155 5 1190 4558 45 0 14 chr6 79395121 79395700 -70121337 + L1Md_F2 LINE L1 6000 6570 -12 5 1190 791 39 10 0 chr6 79395846 79395949 -70121088 + (TG)n Simple_repeat Simple_repeat 1 104 0 5 1190 410 358 7 15 chr6 79395951 79396087 -70120950 - B3A SINE B2 -50 148 14 5 1190 699 323 42 102 chr6 79396465 79396896 -70120141 + MTD LTR MaLR 1 405 -14 5 1190 22 0 0 0 chr6 79397099 79397121 -70119916 + AT_rich Low_complexity Low_complexity 1 22 0 5 1190 279 224 0 136 chr6 79397700 79397788 -70119249 + ID4_ SINE ID 8 83 0 5 1190 255 358 34 82 chr6 79397788 79397846 -70119191 + B4 SINE B4 8 146 -146 5 1190 25 0 0 0 chr6 79397994 79398019 -70119018 + AT_rich Low_complexity Low_complexity 1 25 0 5 1190 705 325 103 11 chr6 79398572 79398932 -70118105 + MTD LTR MaLR 9 406 -15 5 1190 410 306 66 15 chr6 79400305 79400501 -70116536 - B3 SINE B2 -9 207 2 5 1190 213 169 70 0 chr6 79401844 79401915 -70115122 + CT-rich Low_complexity Low_complexity 2 77 0 5 1190 441 311 220 9 chr6 79402269 79402483 -70114554 + MTEb LTR MaLR 1 259 -120 5 1190 1522 219 34 148 chr6 79403090 79403311 -70113726 - ORR1B1 LTR MaLR 0 394 225 5 1190 2404 102 6 6 chr6 79403311 79403666 -70113371 + L1_Mus1 LINE L1 6212 6566 -1 5 1190 1522 219 34 148 chr6 79403666 79403889 -70113148 - ORR1B1 LTR MaLR -170 224 1 5 1190 459 0 0 0 chr6 79404107 79404158 -70112879 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1190 913 208 259 64 chr6 79404872 79405351 -70111686 + MT2A LTR ERVL 1 482 -51 5 1190 423 0 0 0 chr6 79405351 79405398 -70111639 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1190 913 196 243 76 chr6 79405398 79405453 -70111584 + MT2A LTR ERVL 483 532 -1 5 1190 5246 39 3 11 chr6 79405756 79406500 -70110537 - L1Md_F2 LINE L1 0 6582 5940 5 1190 687 54 36 9 chr6 79406660 79406772 -70110265 - L1Md_F3 LINE L1 0 6584 6470 5 1190 21 0 0 0 chr6 79406953 79406974 -70110063 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 292 289 229 8 chr6 79407749 79407871 -70109166 + B3 SINE B2 2 150 -66 6 1190 6767 195 74 4 chr6 79407913 79409271 -70107766 + Lx5 LINE L1 5596 7047 -3 6 1190 240 111 0 0 chr6 79409812 79409848 -70107189 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1190 247 293 53 0 chr6 79410080 79410155 -70106882 - L1MA6 LINE L1 -31 6269 6191 6 1190 420 334 129 18 chr6 79410651 79410854 -70106183 - RSINE1 SINE B4 -20 272 1 6 1190 1554 33 0 11 chr6 79410906 79411279 -70105758 + (GGGAGA)n Simple_repeat Simple_repeat 1 368 0 6 1190 233 294 0 0 chr6 79412111 79412162 -70104875 + MamGypLTR2 LTR Gypsy 669 719 -470 6 1190 30 0 0 0 chr6 79413527 79413557 -70103480 + AT_rich Low_complexity Low_complexity 1 30 0 6 1190 408 20 0 0 chr6 79413694 79413743 -70103294 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1190 25648 147 21 13 chr6 79413802 79419945 -70097092 - L1_Mus3 LINE L1 -3 6635 467 6 1190 1995 61 0 0 chr6 79419938 79420201 -70096836 + L1_Mus2 LINE L1 5883 6145 -421 6 1190 1004 123 18 0 chr6 79420201 79420372 -70096665 + L1_Mus3 LINE L1 6462 6635 -3 6 1190 313 225 3 10 chr6 79420377 79420474 -70096563 - L1VL2 LINE L1 -5941 477 402 6 1190 21 36 0 0 chr6 79421515 79421543 -70095494 + AT_rich Low_complexity Low_complexity 1 28 0 6 1190 593 288 18 36 chr6 79422328 79422494 -70094543 + RSINE1 SINE B4 2 164 -1 6 1190 315 160 0 0 chr6 79422502 79422577 -70094460 + (CAGA)n Simple_repeat Simple_repeat 4 78 0 6 1190 973 251 58 34 chr6 79422820 79423189 -70093848 + MTD LTR MaLR 1 404 -15 6 1190 268 351 97 0 chr6 79424093 79424278 -70092759 + Cheshire DNA MER1_type 79 281 -2139 6 1190 501 305 63 5 chr6 79424648 79424839 -70092198 + B3 SINE B2 1 202 -14 6 1190 260 189 14 0 chr6 79425526 79425600 -70091437 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1190 1095 185 70 9 chr6 79425656 79425869 -70091168 - URR1A DNA MER1_type 0 226 1 6 1190 1229 199 94 34 chr6 79425927 79426224 -70090813 - RLTR46 LTR ERVK -5 315 1 6 1190 259 270 55 72 chr6 79426782 79427010 -70090027 + RLTR9B LTR ERVK 156 410 -27 6 1190 21 0 0 0 chr6 79427045 79427066 -70089971 + AT_rich Low_complexity Low_complexity 1 21 0 6 1190 479 379 11 5 chr6 79427454 79427645 -70089392 + B3A SINE B2 1 192 -6 6 1190 287 105 18 0 chr6 79429048 79429105 -70087932 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 148 1921 212 56 35 chr6 79429268 79429748 -70087289 + RLTR16 LTR ERVK 4 493 -12 6 1191 591 271 42 92 chr6 79429977 79430085 -70086952 - Lx8 LINE L1 -351 7122 7025 6 1191 3675 79 94 6 chr6 79430085 79430630 -70086407 - L1_Mus3 LINE L1 -4 6634 6042 6 1191 591 271 42 92 chr6 79430630 79430858 -70086179 - Lx8 LINE L1 -449 7024 6803 6 1191 22 35 0 0 chr6 79430966 79430995 -70086042 + AT_rich Low_complexity Low_complexity 1 29 0 6 1191 692 292 164 16 chr6 79431323 79431640 -70085397 + MTE2b LTR MaLR 1 364 -15 6 1191 319 368 20 8 chr6 79431780 79431810 -70085227 - L1M5 LINE L1 -1013 5133 5100 6 1191 562 100 109 0 chr6 79431810 79431920 -70085117 - L1Md_F2 LINE L1 -3 6579 6458 6 1191 1663 72 0 5 chr6 79431920 79432143 -70084894 - L1_Mm LINE L1 -814 5069 4848 6 1191 534 274 163 30 chr6 79432143 79432346 -70084691 - MTD LTR MaLR -72 347 118 6 1191 434 340 64 28 chr6 79432471 79432689 -70084348 + MER31A LTR ERV1 111 336 -149 6 1191 330 320 10 0 chr6 79433223 79433326 -70083711 + RMER15 LTR ERVL 422 525 -50 6 1191 1227 150 0 0 chr6 79434125 79434305 -70082732 - Lx LINE L1 -401 6253 6074 6 1191 2233 142 25 25 chr6 79434305 79434709 -70082328 + Lx LINE L1 6249 6652 -2 6 1191 967 225 9 23 chr6 79434798 79435012 -70082025 + B3 SINE B2 2 212 -4 6 1191 203 315 0 27 chr6 79435303 79435378 -70081659 + GA-rich Low_complexity Low_complexity 3 75 0 6 1191 1374 274 134 14 chr6 79435630 79436197 -70080840 + Lx8 LINE L1 6830 7464 -9 6 1191 345 315 97 0 chr6 79436573 79436738 -70080299 + MIR SINE MIR 74 254 -8 6 1191 211 246 16 0 chr6 79436971 79437032 -70080005 + (TA)n Simple_repeat Simple_repeat 1 62 0 6 1191 454 362 55 15 chr6 79437685 79437884 -70079153 - B4A SINE B4 -4 288 82 6 1191 310 97 306 0 chr6 79437899 79437971 -70079066 - Lx3C LINE L1 -6 6970 6877 6 1191 568 332 54 23 chr6 79438369 79438757 -70078280 - L1MCb LINE L1 -5242 803 404 6 1191 249 288 53 27 chr6 79438829 79438979 -70078058 + (CATATA)n Simple_repeat Simple_repeat 2 155 0 6 1191 222 207 0 0 chr6 79438980 79439038 -70077999 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1191 267 326 129 30 chr6 79439038 79439370 -70077667 - L1MCb LINE L1 -5678 367 3 6 1191 22 35 0 0 chr6 79439424 79439453 -70077584 + AT_rich Low_complexity Low_complexity 1 29 0 6 1191 684 212 120 0 chr6 79439463 79439647 -70077390 - B3 SINE B2 -10 206 1 6 1191 2162 56 0 0 chr6 79439680 79439949 -70077088 - L1_Mm LINE L1 -359 5524 5256 6 1191 2677 33 6 6 chr6 79439949 79440284 -70076753 + L1Md_F3 LINE L1 6250 6584 0 6 1191 441 237 89 41 chr6 79440386 79440501 -70076536 + RSINE1 SINE B4 1 124 -41 6 1191 891 43 0 0 chr6 79440501 79440617 -70076420 + (CA)n Simple_repeat Simple_repeat 1 116 0 6 1191 244 256 76 13 chr6 79440755 79440834 -70076203 - B4 SINE B4 -15 277 194 6 1191 236 279 29 0 chr6 79440881 79440949 -70076088 - B4A SINE B4 -221 71 2 6 1191 1606 166 63 3 chr6 79441954 79442257 -70074780 + ORR1A4 LTR MaLR 1 321 -8 6 1191 241 231 52 61 chr6 79442706 79442821 -70074216 - L1MD LINE L1 -928 5431 5318 6 1191 465 237 84 0 chr6 79442940 79443071 -70073966 - B1_Mur3 SINE Alu -7 142 1 6 1191 531 308 69 121 chr6 79443331 79443892 -70073145 - L1M2 LINE L1 -1023 5120 4628 6 1191 722 213 213 0 chr6 79443892 79444056 -70072981 - B3 SINE B2 -17 199 1 6 1191 531 308 69 121 chr6 79444056 79444234 -70072803 - L1M2 LINE L1 -1516 4627 4439 6 1191 441 0 0 0 chr6 79444234 79444283 -70072754 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1191 531 308 69 121 chr6 79444283 79444631 -70072406 - L1M2 LINE L1 -1705 4438 4090 6 1191 292 278 37 0 chr6 79444902 79445010 -70072027 + L1M3 LINE L1 4164 4275 -1865 6 1191 354 369 47 19 chr6 79445036 79445293 -70071744 - L1M2 LINE L1 -2231 3912 3649 6 1191 1080 111 0 0 chr6 79446260 79446422 -70070615 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 6 1191 1001 92 14 0 chr6 79446423 79446565 -70070472 - B1_Mm SINE Alu -2 145 2 6 1191 264 260 30 20 chr6 79447305 79447442 -70069595 + CT-rich Low_complexity Low_complexity 1 138 0 6 1191 347 286 57 0 chr6 79447446 79447551 -70069486 - ID_B1 SINE B4 -1 223 113 6 1191 344 77 0 19 chr6 79447789 79447842 -70069195 + (TTTTC)n Simple_repeat Simple_repeat 5 56 0 6 1191 435 38 0 0 chr6 79447842 79447895 -70069142 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1191 3155 179 20 12 chr6 79447902 79448500 -70068537 - Lx LINE L1 -14 6640 6038 6 1191 415 331 13 26 chr6 79449277 79449429 -70067608 - RSINE1 SINE B4 -4 161 12 6 1191 3316 75 33 2 chr6 79449711 79450163 -70066874 - L1_Mus2 LINE L1 0 6566 6101 6 1191 911 76 15 0 chr6 79450164 79450296 -70066741 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 6 1191 326 246 0 14 chr6 79450385 79450459 -70066578 - Lx9 LINE L1 -493 7151 7079 6 1191 388 146 39 10 chr6 79450991 79451095 -70065942 + (TA)n Simple_repeat Simple_repeat 2 108 0 6 1191 248 274 58 33 chr6 79451224 79451345 -70065692 - L1MC2 LINE L1 -98 6246 6123 6 1191 417 288 79 63 chr6 79451757 79451946 -70065091 + MLT1B LTR MaLR 161 352 -38 6 1191 416 321 66 48 chr6 79452008 79452463 -70064574 - L1MC LINE L1 -1572 4574 4112 6 1191 26 74 0 0 chr6 79453142 79453196 -70063841 + AT_rich Low_complexity Low_complexity 1 54 0 6 1191 216 246 35 0 chr6 79453407 79453464 -70063573 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 6 1191 494 158 10 10 chr6 79453704 79453806 -70063231 - Lx3A LINE L1 -2 6979 6878 6 1191 13260 112 27 25 chr6 79453806 79454520 -70062517 + L1_Mur1 LINE L1 1732 2489 -3397 6 1191 389 54 18 0 chr6 79454520 79454576 -70062461 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1191 13260 112 27 25 chr6 79454576 79455793 -70061244 + L1_Mur1 LINE L1 2490 3689 -2197 6 1191 2874 64 16 3 chr6 79455793 79456171 -70060866 + L1_Mus1 LINE L1 6184 6566 -1 6 1191 13260 112 27 25 chr6 79456171 79456407 -70060630 + L1_Mur1 LINE L1 3690 3904 -1982 6 1191 200 167 0 0 chr6 79456407 79456437 -70060600 + (CG)n Simple_repeat Simple_repeat 1 30 0 6 1191 288 0 0 0 chr6 79456437 79456469 -70060568 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1191 1119 95 0 0 chr6 79456489 79456636 -70060401 + B1_Mus1 SINE Alu 1 147 -1 6 1191 7037 34 0 5 chr6 79456937 79457763 -70059274 - RLTR13B2 LTR ERVK 0 822 1 6 1191 23 0 0 0 chr6 79458124 79458147 -70058890 + AT_rich Low_complexity Low_complexity 1 23 0 6 1191 1295 170 67 77 chr6 79458201 79458538 -70058499 - ORR1A3 LTR MaLR -4 370 1 6 1191 8510 168 90 14 chr6 79458538 79458732 -70058305 - ORR1A3-int LTR MaLR 0 1963 1773 6 1191 369 0 0 0 chr6 79458732 79458773 -70058264 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 6 1191 8510 168 90 14 chr6 79458773 79460402 -70056635 - ORR1A3-int LTR MaLR -191 1772 2 6 1191 1622 185 6 69 chr6 79460403 79460751 -70056286 - ORR1A3 LTR MaLR 0 326 1 6 1191 396 0 0 0 chr6 79460769 79460813 -70056224 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 1191 1062 83 14 0 chr6 79461102 79461247 -70055790 + B1_Mus1 SINE Alu 2 148 0 6 1191 289 24 105 47 chr6 79461247 79461333 -70055704 + A-rich Low_complexity Low_complexity 1 91 0 6 1191 399 213 21 0 chr6 79461477 79461571 -70055466 + Lx9 LINE L1 7375 7470 -174 6 1191 31 44 0 0 chr6 79461660 79461705 -70055332 + AT_rich Low_complexity Low_complexity 1 45 0 6 1191 371 296 37 9 chr6 79461717 79461826 -70055211 + B3A SINE B2 21 132 -66 6 1191 1489 151 124 0 chr6 79462025 79462316 -70054721 - IAPEY3_LTR LTR ERVK -5 327 1 6 1191 3152 277 40 56 chr6 79462645 79463681 -70053356 + RMER1C Other Other 324 1342 0 6 1191 7769 37 15 4 chr6 79463941 79464888 -70052149 + L1Md_F3 LINE L1 5625 6581 -3 6 1191 189 0 0 0 chr6 79464903 79464924 -70052113 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1191 887 258 35 31 chr6 79464926 79465186 -70051851 - RMER19C LTR ERVK -34 577 317 7 1191 431 225 124 8 chr6 79465184 79465305 -70051732 - RMER19B LTR ERVK -463 439 305 7 1191 21 57 0 0 chr6 79465953 79465988 -70051049 + AT_rich Low_complexity Low_complexity 1 35 0 7 1191 528 326 43 38 chr6 79466013 79466163 -70050874 + B3A SINE B2 13 169 -29 7 1191 534 70 0 0 chr6 79466163 79466234 -70050803 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1191 528 326 43 38 chr6 79466234 79466268 -70050769 + B3A SINE B2 170 198 0 7 1191 41169 6 0 0 chr6 79466796 79473372 -70043665 - L1Md_A LINE L1 0 6582 7 7 1191 645 117 0 42 chr6 79474029 79474172 -70042865 + T-rich Low_complexity Low_complexity 2 138 0 7 1191 28359 115 25 14 chr6 79474782 79477262 -70039775 - Lx3_Mus LINE L1 -1 7008 4466 7 1191 2843 12 0 0 chr6 79477262 79477584 -70039453 - RLTRETN_Mm LTR ERVK 0 322 1 7 1191 28359 107 20 18 chr6 79477584 79480717 -70036320 - Lx3_Mus LINE L1 -1421 4465 1363 7 1191 2921 204 212 36 chr6 79480711 79481601 -70035436 - Lx3_Mus LINE L1 -5921 1063 17 7 1191 21 0 0 0 chr6 79481680 79481701 -70035336 + AT_rich Low_complexity Low_complexity 1 21 0 7 1191 4404 227 89 20 chr6 79481701 79482232 -70034805 + Lx6 LINE L1 167 756 -6972 7 1191 5951 47 0 1 chr6 79482232 79482961 -70034076 - L1Md_F2 LINE L1 0 6582 5855 7 1191 4640 216 71 11 chr6 79482961 79484227 -70032810 + Lx6 LINE L1 757 2061 -3819 7 1191 318 67 0 0 chr6 79484227 79484272 -70032765 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1191 4640 210 62 6 chr6 79484272 79484697 -70032340 + Lx6 LINE L1 2062 2534 -3346 7 1191 450 239 0 0 chr6 79484703 79484820 -70032217 + Lx6 LINE L1 3532 3648 -2232 7 1191 5098 250 52 14 chr6 79484807 79487259 -70029778 + Lx6 LINE L1 4636 7181 -279 7 1191 629 186 78 39 chr6 79487266 79487445 -70029592 + Lx7 LINE L1 7509 7694 -2 7 1191 207 114 0 0 chr6 79487809 79487844 -70029193 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1191 324 35 70 0 chr6 79488964 79489021 -70028016 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 7 1191 441 307 23 30 chr6 79489040 79489171 -70027866 + B3A SINE B2 2 131 -67 7 1191 519 95 0 0 chr6 79489180 79489254 -70027783 + (CACG)n Simple_repeat Simple_repeat 2 75 0 7 1191 338 350 102 0 chr6 79489370 79489507 -70027530 - RSINE1 SINE B4 -2 163 13 7 1191 399 327 51 36 chr6 79490022 79490298 -70026739 - Lx8 LINE L1 -10 7463 7184 7 1191 256 260 0 14 chr6 79490359 79490433 -70026604 + T-rich Low_complexity Low_complexity 3 75 0 7 1191 2695 158 15 7 chr6 79490437 79490895 -70026142 - Lx3B LINE L1 -3 6970 6509 7 1191 360 293 25 62 chr6 79490916 79491076 -70025961 - Lx8 LINE L1 -478 6995 6842 7 1191 3920 24 0 0 chr6 79492265 79492728 -70024309 - L1Md_F2 LINE L1 -430 5453 4991 7 1191 7800 39 1 9 chr6 79492726 79493855 -70023182 + L1Md_F2 LINE L1 5442 6557 -25 7 1191 408 40 0 0 chr6 79493861 79493911 -70023126 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 7 1191 228 217 113 28 chr6 79494217 79494288 -70022749 - B3A SINE B2 -116 82 6 7 1191 297 169 0 0 chr6 79494399 79494458 -70022579 + GA-rich Low_complexity Low_complexity 3 61 0 7 1191 321 50 0 0 chr6 79494583 79494623 -70022414 + ORR1D1 LTR MaLR 1 40 -334 7 1191 787 273 61 129 chr6 79494839 79495005 -70022032 + ORR1D2 LTR MaLR 1 157 -213 7 1191 396 0 0 0 chr6 79495005 79495049 -70021988 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 1191 787 273 61 129 chr6 79495049 79495277 -70021760 + ORR1D2 LTR MaLR 158 368 -2 7 1191 248 275 23 81 chr6 79495690 79495777 -70021260 - MTE2a LTR MaLR -124 255 174 7 1191 7648 93 44 4 chr6 79496175 79496186 -70020851 - Lx3_Mus LINE L1 -16 6993 6987 7 1191 228 67 0 0 chr6 79496186 79496216 -70020821 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 7 1191 7648 93 44 4 chr6 79496216 79497353 -70019684 - Lx3_Mus LINE L1 -23 6986 5799 7 1191 781 162 10 0 chr6 79498283 79498501 -70018536 + GA-rich Low_complexity Low_complexity 1 220 0 7 1191 257 306 152 10 chr6 79498706 79498805 -70018232 + B3 SINE B2 1 113 -103 7 1191 360 241 12 0 chr6 79498828 79498911 -70018126 + L1_Mur3 LINE L1 1 84 -7628 7 1191 3530 232 51 14 chr6 79498910 79499791 -70017246 + L1_Mur3 LINE L1 341 1254 -6458 7 1191 1463 96 0 0 chr6 79499790 79499999 -70017038 + L1_Mm LINE L1 4964 5172 -711 7 1191 3287 56 0 0 chr6 79500000 79500412 -70016625 + L1Md_F2 LINE L1 5174 5585 -298 1 1191 7047 87 15 19 chr6 79500413 79501413 -70015624 + L1Md_F2 LINE L1 5587 6582 0 1 1191 5658 213 33 51 chr6 79501430 79502243 -70014794 + Lx7 LINE L1 1244 2062 -3818 2 1191 205 89 22 22 chr6 79502243 79502289 -70014748 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1191 5658 213 33 51 chr6 79502289 79502719 -70014318 + Lx7 LINE L1 2063 2463 -3417 2 1191 270 0 0 0 chr6 79502719 79502749 -70014288 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1191 5658 213 33 51 chr6 79502749 79503219 -70013818 + Lx7 LINE L1 2464 2926 -2954 2 1191 859 177 32 5 chr6 79503234 79503421 -70013616 + Lx7 LINE L1 3280 3471 -2409 2 1191 1045 207 126 23 chr6 79503427 79503689 -70013348 + RLTR25B LTR ERVK 740 1028 0 5 1191 362 115 16 0 chr6 79503743 79503804 -70013233 + (CCA)n Simple_repeat Simple_repeat 1 62 0 6 1191 216 204 20 0 chr6 79503804 79503853 -70013184 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 7 1191 1409 228 25 101 chr6 79503859 79504343 -70012694 + Lx7 LINE L1 4650 5096 -784 2 1191 337 183 0 16 chr6 79504348 79504409 -70012628 - RLTR21 LTR ERVK -4 1568 1509 8 1191 4132 254 46 20 chr6 79504456 79504481 -70012556 - RMER12B LTR ERVK -182 1222 1198 9 1191 909 69 0 0 chr6 79504481 79504611 -70012426 + (GA)n Simple_repeat Simple_repeat 2 131 0 1 1191 4132 254 46 20 chr6 79504611 79505770 -70011267 - RMER12B LTR ERVK -207 1197 7 9 1191 1468 210 17 96 chr6 79505777 79506256 -70010781 + Lx7 LINE L1 5093 5533 -347 2 1191 1489 302 92 26 chr6 79506257 79506994 -70010043 + Lx7 LINE L1 5679 6464 -1232 2 1191 7408 141 24 14 chr6 79506998 79508310 -70008727 + MurERV4_19-int LTR ERVK 3718 5042 -738 1 1191 2031 133 13 3 chr6 79508315 79508631 -70008406 - ORR1A2 LTR MaLR -8 319 1 1 1191 1173 103 43 0 chr6 79508631 79508816 -70008221 + MurERV4_19-int LTR ERVK 5039 5231 -549 1 1191 1480 187 50 16 chr6 79508857 79509178 -70007859 + MurERV4_19-int LTR ERVK 5181 5512 -268 1 1191 673 289 20 10 chr6 79509181 79509380 -70007657 - Lx7 LINE L1 -375 7321 7121 1 1191 1923 241 18 14 chr6 79509382 79509827 -70007210 - Lx6 LINE L1 -773 6687 6241 1 1191 1141 244 160 17 chr6 79509912 79510262 -70006775 - MTD LTR MaLR -7 412 13 1 1191 186 43 0 0 chr6 79510262 79510285 -70006752 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1191 2532 248 47 52 chr6 79511225 79512033 -70005004 - RLTR40 LTR ERVK -5 812 9 1 1191 485 79 191 2 chr6 79512207 79512314 -70004723 + L1Md_F2 LINE L1 6458 6582 0 1 1191 388 225 50 0 chr6 79513213 79513293 -70003744 + B3A SINE B2 2 85 -113 1 1191 263 315 21 42 chr6 79513293 79513309 -70003728 + B4A SINE B4 2 95 -197 2 1191 1289 60 0 6 chr6 79513546 79513715 -70003322 + L1Md_T LINE L1 6415 6582 0 2 1191 22 35 0 0 chr6 79513784 79513813 -70003224 + AT_rich Low_complexity Low_complexity 1 29 0 2 1191 1869 320 44 36 chr6 79513835 79514635 -70002402 + Lx8 LINE L1 6191 6996 -477 2 1191 4435 51 7 0 chr6 79515012 79515576 -70001461 - L1Md_F2 LINE L1 -1291 4592 4025 2 1191 7645 76 1 0 chr6 79515573 79516573 -70000464 + L1Md_F2 LINE L1 4586 5586 -297 2 1191 7844 49 9 5 chr6 79516573 79517564 -69999473 + L1Md_F2 LINE L1 5587 6581 -1 2 1191 794 205 98 25 chr6 79518086 79518321 -69998716 - Lx4B LINE L1 -4 7054 6803 2 1191 317 182 0 0 chr6 79518364 79518419 -69998618 - Lx9 LINE L1 -392 7252 7198 2 1191 240 308 32 42 chr6 79518675 79518770 -69998267 - B1F1 SINE Alu -49 100 7 2 1191 26 30 0 0 chr6 79519608 79519641 -69997396 + AT_rich Low_complexity Low_complexity 1 33 0 2 1191 26 50 0 0 chr6 79520328 79520368 -69996669 + AT_rich Low_complexity Low_complexity 1 40 0 2 1191 703 296 0 6 chr6 79521779 79521860 -69995177 + B4A SINE B4 6 85 -207 3 1191 323 286 21 21 chr6 79521860 79521953 -69995084 + B1F1 SINE Alu 2 94 -55 3 1191 232 307 53 13 chr6 79522061 79522137 -69994900 - B1_Mus1 SINE Alu -47 101 23 3 1191 648 38 0 0 chr6 79522252 79522331 -69994706 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 1191 312 360 31 31 chr6 79522449 79522578 -69994459 + RSINE1 SINE B4 2 130 -35 3 1191 243 125 0 0 chr6 79522598 79522638 -69994399 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1191 264 154 0 0 chr6 79522638 79522690 -69994347 + GA-rich Low_complexity Low_complexity 1 52 0 3 1191 243 289 50 40 chr6 79522691 79522792 -69994245 - LTR48 LTR ERV1 -634 153 52 3 1191 321 206 167 45 chr6 79523294 79523317 -69993720 + L1MD LINE L1 3063 3080 -3066 3 1191 1114 62 0 7 chr6 79523317 79523464 -69993573 + B1_Mm SINE Alu 2 147 0 3 1191 321 206 167 45 chr6 79523464 79523572 -69993465 + L1MD LINE L1 3081 3210 -2936 3 1191 254 0 20 61 chr6 79523633 79523682 -69993355 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 4 1191 1725 243 109 38 chr6 79523692 79524188 -69992849 - RMER15 LTR ERVL -18 557 27 4 1191 671 152 16 0 chr6 79524293 79524418 -69992619 + CT-rich Low_complexity Low_complexity 2 128 0 4 1191 496 325 46 74 chr6 79524704 79524920 -69992117 - ORR1E LTR MaLR -149 210 1 4 1191 980 301 68 60 chr6 79526204 79526540 -69990497 + ORR1E LTR MaLR 11 349 -10 4 1191 7437 8 0 6 chr6 79526766 79527599 -69989438 + L1_Mm LINE L1 4754 5586 -297 4 1191 8977 4 0 0 chr6 79527599 79528595 -69988442 + L1Md_A LINE L1 5587 6582 0 4 1191 7437 8 0 6 chr6 79528595 79528613 -69988424 + L1_Mm LINE L1 5587 5600 -283 4 1191 21 71 0 0 chr6 79528977 79529019 -69988018 + AT_rich Low_complexity Low_complexity 1 42 0 4 1191 237 277 116 81 chr6 79529021 79529194 -69987843 - B3A SINE B2 -18 180 2 4 1191 1662 60 0 0 chr6 79529246 79529461 -69987576 - L1Md_F2 LINE L1 -12 6570 6356 4 1191 1810 153 50 0 chr6 79529643 79529943 -69987094 + Lx3C LINE L1 6660 6974 -2 5 1191 2077 256 61 36 chr6 79530494 79531054 -69985983 - Lx5 LINE L1 0 7050 6477 5 1191 21 36 0 0 chr6 79531139 79531167 -69985870 + AT_rich Low_complexity Low_complexity 1 28 0 5 1191 313 375 115 37 chr6 79531746 79532042 -69984995 + MLT1D LTR MaLR 31 349 -156 5 1191 340 353 57 21 chr6 79532066 79532260 -69984777 - B3 SINE B2 -3 213 13 5 1191 246 284 24 12 chr6 79532281 79532389 -69984648 + MLT1D LTR MaLR 357 505 0 5 1191 234 247 39 52 chr6 79532390 79532467 -69984570 + MLT1D-int LTR MaLR 2 77 -1294 5 1191 253 370 133 0 chr6 79532504 79532677 -69984360 - B3A SINE B2 -1 197 2 5 1191 9423 210 43 30 chr6 79532688 79533534 -69983503 + Lx5 LINE L1 3418 4294 -1583 5 1191 3312 126 30 0 chr6 79533534 79534042 -69982995 + Lx LINE L1 6127 6649 -5 5 1191 9423 203 36 31 chr6 79534042 79535752 -69981285 + Lx5 LINE L1 4295 6016 -1034 5 1191 263 28 28 0 chr6 79535876 79535912 -69981125 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1191 586 312 55 100 chr6 79536037 79536586 -69980451 + MLT1D-int LTR MaLR 862 1388 -101 5 1191 382 363 94 29 chr6 79536707 79536951 -69980086 - B4A SINE B4 -30 262 3 5 1191 673 275 31 106 chr6 79537154 79537447 -69979590 - RLTR25B LTR ERVK 0 1028 758 6 1191 208 53 53 0 chr6 79537480 79537518 -69979519 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 6 1191 324 277 81 109 chr6 79537655 79537902 -69979135 - RLTR25A LTR ERVK -112 991 752 6 1191 2299 179 38 8 chr6 79537913 79538386 -69978651 - RLTR25A LTR ERVK -543 560 9 6 1191 26 30 0 0 chr6 79538439 79538472 -69978565 + AT_rich Low_complexity Low_complexity 1 33 0 6 1191 4331 134 12 14 chr6 79538630 79539320 -69977717 + Lx2 LINE L1 5956 6643 -354 6 1191 1328 134 32 0 chr6 79539320 79539536 -69977501 + Lx2 LINE L1 6775 6997 0 6 1191 767 238 35 0 chr6 79541116 79541288 -69975749 + B3A SINE B2 1 178 -20 6 1191 542 363 44 6 chr6 79542258 79542441 -69974596 + ID_B1 SINE B4 1 190 -34 6 1191 282 85 16 33 chr6 79542536 79542597 -69974440 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1191 22 35 0 0 chr6 79542813 79542842 -69974195 + AT_rich Low_complexity Low_complexity 1 29 0 6 1191 2927 78 13 2 chr6 79542889 79543285 -69973752 - MTB LTR MaLR 0 400 1 6 1191 7043 96 27 44 chr6 79543285 79543947 -69973090 - MTB-int LTR MaLR 0 1098 427 6 1191 1166 81 0 0 chr6 79543947 79544095 -69972942 + B1_Mus1 SINE Alu 1 148 0 7 1191 7043 96 27 44 chr6 79544095 79544548 -69972489 - MTB-int LTR MaLR -672 426 2 6 1191 197 120 40 0 chr6 79544862 79544912 -69972125 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 7 1191 207 0 0 0 chr6 79544920 79544943 -69972094 + (GA)n Simple_repeat Simple_repeat 1 23 0 7 1191 339 309 23 47 chr6 79545120 79545249 -69971788 + Lx8 LINE L1 7082 7207 -266 7 1191 396 0 0 0 chr6 79545271 79545315 -69971722 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1191 225 323 89 12 chr6 79545593 79545762 -69971275 + L1MC3 LINE L1 5486 5667 -2118 7 1191 207 0 0 0 chr6 79545768 79545791 -69971246 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1191 680 268 43 10 chr6 79545961 79546168 -69970869 + B3 SINE B2 1 214 -2 7 1191 23 101 0 0 chr6 79546246 79546325 -69970712 + AT_rich Low_complexity Low_complexity 1 79 0 7 1191 862 321 170 16 chr6 79546433 79547317 -69969720 + L1MC3 LINE L1 5753 6772 -1013 7 1191 497 331 11 54 chr6 79547321 79547479 -69969558 + B3A SINE B2 6 156 -42 7 1191 414 0 0 0 chr6 79547479 79547525 -69969512 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1191 497 351 18 48 chr6 79547525 79547581 -69969456 + B3A SINE B2 157 216 0 7 1191 662 306 28 42 chr6 79548055 79548270 -69968767 - ID_B1 SINE B4 -11 213 2 8 1191 688 322 42 78 chr6 79550116 79550449 -69966588 - MTE2a LTR MaLR -49 330 10 8 1191 23 33 0 0 chr6 79551577 79551607 -69965430 + AT_rich Low_complexity Low_complexity 1 30 0 8 1191 230 0 0 32 chr6 79552554 79552585 -69964452 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 8 1191 22 0 0 0 chr6 79553090 79553112 -69963925 + AT_rich Low_complexity Low_complexity 1 22 0 8 1191 26 0 0 0 chr6 79553150 79553176 -69963861 + AT_rich Low_complexity Low_complexity 1 26 0 8 1191 376 345 0 63 chr6 79553203 79553330 -69963707 + B3A SINE B2 50 168 -30 8 1191 351 0 0 0 chr6 79553343 79553382 -69963655 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1191 183 286 56 28 chr6 79553654 79553726 -69963311 - L3 LINE CR1 -134 4355 4282 8 1191 280 118 0 81 chr6 79555910 79555947 -69961090 + T-rich Low_complexity Low_complexity 38 72 0 9 1191 1214 41 0 0 chr6 79555947 79556094 -69960943 - B1_Mm SINE Alu 0 147 1 9 1191 280 118 0 81 chr6 79556094 79556130 -69960907 + T-rich Low_complexity Low_complexity 5 37 0 9 1191 403 220 0 13 chr6 79556196 79556274 -69960763 + polypurine Low_complexity Low_complexity 2 77 0 9 1191 1125 83 0 0 chr6 79556274 79556454 -69960583 + (GAA)n Simple_repeat Simple_repeat 1 180 0 9 1191 337 230 0 14 chr6 79556454 79556516 -69960521 + polypurine Low_complexity Low_complexity 78 139 0 9 1191 3102 258 115 56 chr6 79556516 79558146 -69958891 - Lx5 LINE L1 -110 6940 5222 9 1191 391 58 0 0 chr6 79558914 79558966 -69958071 - L1_Mm LINE L1 -842 5041 4990 9 1191 6129 57 4 0 chr6 79558938 79559727 -69957310 - L1_Mm LINE L1 -1042 4841 4050 9 1191 1203 113 0 0 chr6 79559725 79559902 -69957135 + L1Md_F2 LINE L1 5013 5189 -694 9 1191 612 40 13 0 chr6 79559897 79559973 -69957064 + L1Md_F2 LINE L1 5509 5585 -298 9 148 7872 58 5 0 chr6 79559974 79560965 -69956072 + L1Md_F2 LINE L1 5587 6582 0 9 1192 230 327 64 0 chr6 79561169 79561279 -69955758 + PB1D10 SINE Alu 1 117 0 9 1192 312 120 0 0 chr6 79561289 79561339 -69955698 + (GGA)n Simple_repeat Simple_repeat 1 50 0 1 1192 988 132 0 0 chr6 79561518 79561670 -69955367 + L1_Mur1 LINE L1 5531 5682 -204 1 1192 2543 115 16 16 chr6 79561696 79562084 -69954953 + Lx3A LINE L1 6586 6973 -8 1 1192 22 35 0 0 chr6 79562161 79562190 -69954847 + AT_rich Low_complexity Low_complexity 1 29 0 1 1192 301 259 52 22 chr6 79562190 79562324 -69954713 + L1M2 LINE L1 4546 4683 -1457 1 1192 1939 276 88 50 chr6 79562457 79563233 -69953804 - RLTR40 LTR ERVK -10 807 3 1 1192 684 303 71 49 chr6 79563234 79563782 -69953255 + L1M2 LINE L1 4827 5386 -757 1 1192 1109 204 95 12 chr6 79563797 79564040 -69952997 + MTC LTR MaLR 1 263 -158 1 1192 2176 164 30 28 chr6 79564158 79564591 -69952446 + Lx4A LINE L1 6622 7055 -3 1 1192 260 126 56 22 chr6 79564609 79564698 -69952339 + (TATG)n Simple_repeat Simple_repeat 2 93 0 1 1192 588 163 23 0 chr6 79565944 79566073 -69950964 + CT-rich Low_complexity Low_complexity 1 132 0 1 1192 3484 119 4 18 chr6 79566132 79566681 -69950356 - Lx2A LINE L1 0 7008 6468 1 1192 497 346 6 0 chr6 79567520 79567702 -69949335 + B3A SINE B2 1 183 -15 1 1192 546 393 40 7 chr6 79567935 79568209 -69948828 - B4A SINE B4 0 292 10 1 1192 451 331 0 8 chr6 79568447 79568569 -69948468 + RSINE1 SINE B4 6 126 -39 1 1192 564 77 0 0 chr6 79568664 79568742 -69948295 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1192 189 0 0 0 chr6 79569197 79569218 -69947819 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1192 181 83 27 27 chr6 79569805 79569842 -69947195 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1192 425 305 101 36 chr6 79570059 79570601 -69946436 + L1MD LINE L1 5111 5690 -669 1 1192 402 259 94 89 chr6 79570798 79570989 -69946048 + B3A SINE B2 3 194 -4 1 1192 985 235 36 0 chr6 79571018 79571239 -69945798 + Lx6 LINE L1 7232 7460 0 1 1192 1534 323 96 29 chr6 79571317 79572238 -69944799 - Lx8 LINE L1 -136 7337 6356 1 1192 29 0 0 0 chr6 79572717 79572746 -69944291 + AT_rich Low_complexity Low_complexity 1 29 0 1 1192 2013 184 47 102 chr6 79573250 79573788 -69943249 + RMER15 LTR ERVL 5 512 -63 1 1192 27 0 0 0 chr6 79574393 79574420 -69942617 + AT_rich Low_complexity Low_complexity 1 27 0 1 1192 351 0 0 0 chr6 79576034 79576073 -69940964 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1192 336 302 45 32 chr6 79576101 79576255 -69940782 + RMER15 LTR ERVL 4 159 -416 1 1192 309 346 35 83 chr6 79576736 79576966 -69940071 + RMER15 LTR ERVL 341 559 -16 1 1192 189 0 0 0 chr6 79576971 79576992 -69940045 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1192 6284 58 30 19 chr6 79577557 79578403 -69938634 + RLTR13A LTR ERVK 1 855 0 1 1192 1093 141 0 16 chr6 79578405 79578592 -69938445 + ETnERV3-int LTR ERVK 3 186 -5622 1 1192 41962 79 16 12 chr6 79579148 79583462 -69933575 + ETnERV3-int LTR ERVK 186 3977 -1831 1 1192 216 0 0 0 chr6 79583462 79583486 -69933551 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1192 41962 41 11 9 chr6 79583486 79585272 -69931765 + ETnERV3-int LTR ERVK 3978 5797 -11 1 1192 6284 58 30 19 chr6 79585280 79586126 -69930911 + RLTR13A LTR ERVK 1 855 0 1 1192 182 105 26 0 chr6 79586143 79586181 -69930856 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1192 351 113 0 0 chr6 79586184 79586237 -69930800 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1192 484 214 51 8 chr6 79586242 79586360 -69930677 - ID_B1 SINE B4 -7 217 95 1 1192 6517 144 32 11 chr6 79586808 79588714 -69928323 - Lx LINE L1 -7 6647 4697 1 1192 339 310 117 46 chr6 79589179 79589419 -69927618 - MLT1A0 LTR MaLR -11 354 98 1 1192 486 273 105 0 chr6 79589512 79589655 -69927382 + RSINE1 SINE B4 4 161 -4 1 1192 683 91 16 0 chr6 79589787 79589908 -69927129 + (TTTTG)n Simple_repeat Simple_repeat 1 123 0 1 1192 811 48 0 0 chr6 79589909 79590013 -69927024 - B1_Mus2 SINE Alu -1 146 43 1 1192 338 178 13 64 chr6 79589943 79590021 -69927016 - MT2B LTR ERVL -337 264 191 1 1192 419 361 23 0 chr6 79591698 79591831 -69925206 + RSINE1 SINE B4 29 164 -1 1 1192 25 0 0 0 chr6 79592389 79592414 -69924623 + AT_rich Low_complexity Low_complexity 1 25 0 1 1192 29 28 0 0 chr6 79592444 79592480 -69924557 + AT_rich Low_complexity Low_complexity 1 36 0 1 1192 425 299 54 50 chr6 79592917 79593139 -69923898 + RMER15 LTR ERVL 353 575 0 1 1192 648 256 200 17 chr6 79594248 79594320 -69922717 + MTD LTR MaLR 19 93 -326 1 1192 339 65 0 0 chr6 79594320 79594366 -69922671 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1192 648 256 200 17 chr6 79594366 79594583 -69922454 + MTD LTR MaLR 94 360 -59 1 1192 405 0 0 0 chr6 79594593 79594638 -69922399 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 1 1192 5630 58 0 0 chr6 79594648 79595350 -69921687 - L1Md_F2 LINE L1 -12 6570 5869 1 1192 7638 52 5 4 chr6 79595350 79596312 -69920725 + L1Md_F2 LINE L1 4888 5850 -33 1 1192 3332 145 16 2 chr6 79596874 79597420 -69919617 - L1_Mus4 LINE L1 -5 6631 6078 1 1192 1997 132 3 3 chr6 79597421 79597747 -69919290 + L1_Mur2 LINE L1 4112 4437 -1440 1 1192 310 281 29 19 chr6 79597750 79597855 -69919182 - RMER5 LTR ERV1 -20 514 409 1 1192 614 274 86 0 chr6 79599519 79599705 -69917332 - B3 SINE B2 -12 204 3 1 1192 539 311 18 29 chr6 79599847 79600044 -69916993 + B3A SINE B2 4 203 -13 1 1192 2989 261 41 53 chr6 79600162 79602153 -69914884 + Lx6 LINE L1 5115 7028 -30 1 1192 24 32 0 0 chr6 79602193 79602224 -69914813 + AT_rich Low_complexity Low_complexity 1 31 0 1 1192 492 335 0 37 chr6 79602461 79602650 -69914387 - B3A SINE B2 -16 182 1 1 1192 1004 146 8 4 chr6 79602877 79603138 -69913899 + GA-rich Low_complexity Low_complexity 1 262 0 1 1192 198 0 0 0 chr6 79603642 79603664 -69913373 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 1192 264 387 57 52 chr6 79603777 79603987 -69913050 - B4A SINE B4 -6 286 76 1 1192 21 0 0 0 chr6 79604148 79604169 -69912868 + AT_rich Low_complexity Low_complexity 1 21 0 1 1192 385 315 63 31 chr6 79604867 79605102 -69911935 + MER2 DNA MER2_type 80 333 -12 1 1192 28 29 0 0 chr6 79605216 79605251 -69911786 + AT_rich Low_complexity Low_complexity 1 35 0 1 1192 305 297 113 82 chr6 79605329 79605611 -69911426 - L1M2 LINE L1 -2373 3770 3480 1 1192 402 346 0 0 chr6 79605636 79605772 -69911265 - B1_Mur1 SINE Alu -13 136 1 1 1192 558 316 157 42 chr6 79605982 79606243 -69910794 - B4 SINE B4 0 292 2 1 1192 423 0 0 0 chr6 79606252 79606299 -69910738 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1192 831 329 87 51 chr6 79606532 79607237 -69909800 - L1MD LINE L1 -3191 2955 2226 1 1192 752 346 22 7 chr6 79607239 79607510 -69909527 + Tigger7 DNA MER2_type 1 275 -2216 1 1192 374 242 86 31 chr6 79607745 79607907 -69909130 + Tigger7 DNA MER2_type 2300 2470 -21 1 1192 33130 4 0 0 chr6 79607908 79613269 -69903768 + L1Md_A LINE L1 226 5586 -297 1 1192 8985 4 0 0 chr6 79613269 79614304 -69902733 + L1Md_A LINE L1 5587 6582 0 1 1192 249 33 0 0 chr6 79614869 79614899 -69902138 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1192 705 267 21 16 chr6 79615327 79615517 -69901520 + Lx7 LINE L1 7127 7317 -379 1 1192 189 0 0 0 chr6 79615939 79615960 -69901077 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1192 29 60 0 0 chr6 79616626 79616676 -69900361 + AT_rich Low_complexity Low_complexity 1 50 0 1 1192 551 298 56 62 chr6 79616679 79616858 -69900179 - B3 SINE B2 -33 183 6 1 1192 1367 265 33 12 chr6 79616889 79617225 -69899812 + Lx6 LINE L1 7090 7432 -28 1 1192 32 26 0 0 chr6 79618329 79618368 -69898669 + AT_rich Low_complexity Low_complexity 1 39 0 1 1192 1520 208 33 12 chr6 79618814 79619145 -69897892 + RLTR15 LTR ERVK 1 338 -21 1 1192 267 253 71 24 chr6 79619272 79619357 -69897680 + PB1D7 SINE Alu 6 94 -26 1 1192 195 125 0 0 chr6 79619500 79619540 -69897497 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1192 624 342 66 19 chr6 79619713 79619926 -69897111 - MTEa LTR MaLR -90 289 61 1 1192 489 34 0 0 chr6 79619926 79619985 -69897052 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1192 624 342 66 19 chr6 79619985 79620042 -69896995 - MTEa LTR MaLR -319 60 6 1 1192 320 313 130 48 chr6 79620075 79620607 -69896430 + L1MC LINE L1 4028 4631 -1515 1 1192 745 309 15 10 chr6 79620637 79620840 -69896197 + B3 SINE B2 7 210 -6 1 1192 504 222 205 10 chr6 79620861 79620987 -69896050 - Lx9 LINE L1 -2 7642 7489 1 1192 282 29 0 0 chr6 79620987 79621022 -69896015 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1192 504 222 205 10 chr6 79621022 79621095 -69895942 - Lx9 LINE L1 -156 7488 7405 1 1192 681 250 65 33 chr6 79621102 79621317 -69895720 + Lx9 LINE L1 7177 7398 -246 1 1192 21 0 0 0 chr6 79621608 79621629 -69895408 + AT_rich Low_complexity Low_complexity 1 21 0 1 1192 218 164 40 27 chr6 79621909 79621984 -69895053 + (TATAA)n Simple_repeat Simple_repeat 1 76 0 1 1192 7720 67 3 1 chr6 79622169 79623341 -69893696 + L1_Mus1 LINE L1 5395 6567 0 1 1192 389 304 74 10 chr6 79623632 79623863 -69893174 + ORR1E LTR MaLR 77 379 0 1 1192 1537 290 113 38 chr6 79623887 79624807 -69892230 + L1MC3 LINE L1 6668 7656 -129 1 1192 958 254 7 22 chr6 79624969 79625002 -69892035 - L1_Mur2 LINE L1 -516 5646 5614 1 1192 1181 249 52 46 chr6 79625002 79625368 -69891669 + ORR1D2 LTR MaLR 1 368 -2 1 1192 13169 163 21 18 chr6 79625368 79627461 -69889576 - L1_Mur2 LINE L1 -549 5613 3469 1 1192 213 39 0 0 chr6 79627461 79627487 -69889550 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 1192 4515 130 55 11 chr6 79627487 79628249 -69888788 - Lx3_Mus LINE L1 -18 6991 6196 1 1192 13169 162 21 18 chr6 79628249 79628686 -69888351 - L1_Mur2 LINE L1 -2409 3468 3043 1 1192 5708 89 17 2 chr6 79628696 79629513 -69887524 - L1_Mus3 LINE L1 -28 6610 5777 1 1192 1126 72 78 0 chr6 79629477 79629644 -69887393 + L1_Mus3 LINE L1 5656 5835 -803 1 1192 3687 109 5 2 chr6 79629632 79630192 -69886845 - MusHAL1 LINE L1 -836 1876 1315 1 1192 301 131 0 116 chr6 79630339 79630408 -69886629 - HAL1-3A_ME LINE L1 -822 2036 1976 1 1192 183 162 0 0 chr6 79630427 79630464 -69886573 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1192 552 318 128 21 chr6 79630834 79631171 -69885866 + Lx8 LINE L1 7095 7467 -6 1 1192 22 0 0 0 chr6 79631171 79631193 -69885844 + AT_rich Low_complexity Low_complexity 1 22 0 1 1192 36 40 0 0 chr6 79631348 79631398 -69885639 + AT_rich Low_complexity Low_complexity 1 50 0 1 1192 195 236 0 52 chr6 79631871 79631929 -69885108 - L3 LINE CR1 -1714 2775 2721 1 1192 184 263 0 34 chr6 79632058 79632117 -69884920 + MIR3 SINE MIR 152 208 0 2 1192 411 179 60 0 chr6 79632305 79632422 -69884615 - Lx9 LINE L1 0 7644 7521 2 1192 1176 226 127 32 chr6 79632424 79632803 -69884234 - Lx9 LINE L1 -373 7271 6857 2 1192 396 0 0 0 chr6 79633072 79633116 -69883921 + (TTTAA)n Simple_repeat Simple_repeat 3 46 0 2 1192 1109 68 14 0 chr6 79633116 79633262 -69883775 - B1_Mus1 SINE Alu 0 148 1 2 1192 21 36 0 0 chr6 79633265 79633293 -69883744 + AT_rich Low_complexity Low_complexity 1 28 0 2 1192 1071 278 44 0 chr6 79633352 79633600 -69883437 - Lx5 LINE L1 -5 7045 6787 2 1192 35475 70 1 2 chr6 79633610 79639544 -69877493 - L1Md_F2 LINE L1 0 6585 563 2 1192 826 130 0 0 chr6 79639537 79639660 -69877377 - L1Md_F2 LINE L1 -6282 337 215 2 1192 2086 178 27 82 chr6 79639673 79640494 -69876543 - L1_Mur3 LINE L1 -4125 1752 979 2 1192 22 0 0 0 chr6 79640752 79640774 -69876263 + AT_rich Low_complexity Low_complexity 1 22 0 2 1192 201 219 0 0 chr6 79640794 79640867 -69876170 + GA-rich Low_complexity Low_complexity 2 74 0 2 1192 262 256 11 11 chr6 79640868 79640955 -69876082 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 1192 451 253 11 0 chr6 79642134 79642221 -69874816 + RSINE1 SINE B4 13 100 -65 2 1192 411 21 0 0 chr6 79642487 79642535 -69874502 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1192 396 0 0 0 chr6 79642535 79642578 -69874459 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1192 279 241 73 9 chr6 79643018 79643127 -69873910 - L1M5 LINE L1 -1569 4577 4462 2 1192 456 288 134 17 chr6 79643451 79643741 -69873296 + MER67C LTR ERV1 388 711 0 2 1192 561 301 25 30 chr6 79644157 79644356 -69872681 + B3A SINE B2 1 198 0 2 1192 1080 88 0 0 chr6 79644369 79644516 -69872521 + B1_Mus2 SINE Alu 1 147 0 2 1192 38 0 0 0 chr6 79644516 79644554 -69872483 + AT_rich Low_complexity Low_complexity 1 38 0 2 1192 2515 166 42 0 chr6 79644563 79645016 -69872021 - L1_Mur2 LINE L1 -1510 4367 3896 2 1192 1213 308 85 30 chr6 79645013 79645648 -69871389 + Lx5 LINE L1 6496 7020 -30 2 1192 261 263 20 10 chr6 79645651 79645751 -69871286 + A-rich Low_complexity Low_complexity 5 105 0 2 1192 2462 174 56 101 chr6 79645751 79646141 -69870896 - RMER6C LTR ERVK 0 690 331 2 1192 558 0 0 0 chr6 79646141 79646203 -69870834 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1192 2462 174 56 101 chr6 79646203 79646438 -69870599 - RMER6C LTR ERVK -360 330 93 2 1192 207 100 0 0 chr6 79646456 79646486 -69870551 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1192 677 267 14 114 chr6 79646730 79646950 -69870087 - B3A SINE B2 0 198 1 2 1192 434 289 6 84 chr6 79648238 79648404 -69868633 + RSINE1 SINE B4 5 157 -8 2 1192 219 69 0 0 chr6 79648754 79648783 -69868254 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1192 16044 22 0 0 chr6 79649072 79651617 -69865420 - L1Md_T LINE L1 -1 6581 4037 2 1192 3268 81 7 2 chr6 79652355 79652799 -69864238 + L1_Mus3 LINE L1 6158 6603 -35 2 1192 674 84 32 0 chr6 79652818 79652913 -69864124 - B1_Mus2 SINE Alu 0 147 50 2 1192 441 0 0 0 chr6 79653120 79653169 -69863868 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1192 351 0 0 0 chr6 79653169 79653207 -69863830 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1192 426 349 7 13 chr6 79653210 79653364 -69863673 - RSINE1 SINE B4 -1 164 12 2 1192 21 0 0 0 chr6 79653538 79653559 -69863478 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 24 53 0 0 chr6 79653762 79653800 -69863237 + AT_rich Low_complexity Low_complexity 1 38 0 2 1192 568 262 54 126 chr6 79654056 79654382 -69862655 - Lx7 LINE L1 0 7696 7377 2 1192 4307 42 4 0 chr6 79654382 79654903 -69862134 + L1Md_T LINE L1 6058 6580 -2 2 1192 568 262 54 126 chr6 79654903 79655021 -69862016 - Lx7 LINE L1 -320 7376 7284 2 1192 405 0 0 0 chr6 79655067 79655112 -69861925 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1192 1084 276 110 3 chr6 79655344 79655671 -69861366 + MTD LTR MaLR 20 381 -38 2 1192 186 133 0 0 chr6 79655798 79655828 -69861209 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1192 1201 28 7 0 chr6 79655855 79655999 -69861038 + B1_Mm SINE Alu 2 146 -1 2 1192 440 48 0 16 chr6 79656000 79656064 -69860973 + (CAAAAA)n Simple_repeat Simple_repeat 6 68 0 2 1192 346 316 109 9 chr6 79656266 79656477 -69860560 - RMER20B LTR ERVK -264 363 132 2 1192 318 330 39 67 chr6 79656638 79656846 -69860191 - L1MC1 LINE L1 -317 6016 5815 2 1192 374 305 310 10 chr6 79657151 79657405 -69859632 - MTEb LTR MaLR -10 369 3 2 1192 335 294 37 0 chr6 79657415 79657551 -69859486 - L1MC1 LINE L1 -734 5599 5459 2 1192 527 71 60 10 chr6 79657566 79657666 -69859371 + (TTTTC)n Simple_repeat Simple_repeat 3 107 0 2 1192 302 294 29 7 chr6 79657721 79657858 -69859179 - L1MC1 LINE L1 -758 5388 5249 2 1192 544 265 86 33 chr6 79657880 79658075 -69858962 - MTD LTR MaLR 0 419 211 2 1192 352 192 14 14 chr6 79658218 79658292 -69858745 + B4A SINE B4 3 76 -216 2 1192 796 110 0 0 chr6 79658317 79658435 -69858602 - L1_Mus2 LINE L1 -7 6559 6442 2 1192 366 23 0 0 chr6 79658526 79658569 -69858468 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1192 430 316 32 53 chr6 79658960 79659147 -69857890 + B3A SINE B2 3 185 -13 2 1192 207 69 0 0 chr6 79659176 79659205 -69857832 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1192 21 0 0 0 chr6 79659382 79659403 -69857634 + AT_rich Low_complexity Low_complexity 1 21 0 2 1192 4765 102 6 1 chr6 79660220 79660905 -69856132 + L1_Mus3 LINE L1 5951 6638 0 2 1192 195 129 0 0 chr6 79660956 79660987 -69856050 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1192 1600 216 62 8 chr6 79661120 79661508 -69855529 + Lx9 LINE L1 7039 7447 -197 2 1192 371 248 125 27 chr6 79661517 79661629 -69855408 - MTC LTR MaLR -8 413 291 2 1192 22 0 0 0 chr6 79661720 79661742 -69855295 + AT_rich Low_complexity Low_complexity 1 22 0 2 1192 567 29 0 0 chr6 79661795 79661864 -69855173 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1192 922 291 18 58 chr6 79662512 79662789 -69854248 - B4A SINE B4 0 292 27 2 1192 184 54 81 0 chr6 79663000 79663037 -69854000 + (CAAAC)n Simple_repeat Simple_repeat 3 42 0 2 1192 187 349 128 20 chr6 79663487 79663636 -69853401 + MER5A DNA MER1_type 3 167 -22 2 1192 3934 242 57 67 chr6 79663920 79665196 -69851841 + Lx7 LINE L1 6426 7688 -8 2 1192 704 323 71 63 chr6 79665214 79665564 -69851473 + MTD LTR MaLR 37 389 -30 2 1192 477 0 0 0 chr6 79665648 79665701 -69851336 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1192 2841 36 0 3 chr6 79665701 79666039 -69850998 - L1Md_F2 LINE L1 -21 6561 6225 2 1192 323 326 83 96 chr6 79666755 79666911 -69850126 + B3A SINE B2 29 182 -16 2 1192 420 362 61 32 chr6 79667625 79667936 -69849101 - Lx8 LINE L1 -79 7394 7075 2 1192 556 266 14 4 chr6 79668822 79668964 -69848073 + B1_Mur1 SINE Alu 3 139 -8 2 1192 4311 155 4 18 chr6 79668986 79669730 -69847307 - Lx3B LINE L1 -1 6972 6239 2 1192 4362 81 26 5 chr6 79669745 79670365 -69846672 + L1_Mus2 LINE L1 5933 6565 -1 2 1192 2039 242 65 20 chr6 79670788 79671324 -69845713 - Lx5 LINE L1 -11 7039 6480 2 1192 561 114 0 0 chr6 79671824 79671929 -69845108 + (CA)n Simple_repeat Simple_repeat 1 105 0 2 1192 1070 305 62 30 chr6 79672228 79672694 -69844343 - RMER5 LTR ERV1 -6 528 48 2 1192 585 0 0 0 chr6 79672696 79672761 -69844276 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1192 22 35 0 0 chr6 79673246 79673275 -69843762 + AT_rich Low_complexity Low_complexity 1 29 0 2 1192 1494 269 65 35 chr6 79673645 79673956 -69843081 - Lx6 LINE L1 -1 7459 7143 2 1192 381 58 0 0 chr6 79673956 79674008 -69843029 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1192 1494 269 65 35 chr6 79674008 79674186 -69842851 - Lx6 LINE L1 -318 7142 6955 2 1192 390 21 0 0 chr6 79674822 79674869 -69842168 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1192 225 94 0 0 chr6 79674869 79674900 -69842137 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1192 573 346 56 24 chr6 79674957 79675170 -69841867 - B4A SINE B4 -16 276 57 2 1192 183 186 0 0 chr6 79675395 79675438 -69841599 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1192 470 345 23 6 chr6 79676166 79676338 -69840699 + B3A SINE B2 3 177 -21 2 1192 248 273 48 83 chr6 79677093 79677261 -69839776 + RSINE1 SINE B4 4 165 0 2 1192 416 271 136 48 chr6 79677286 79677433 -69839604 + B4A SINE B4 3 162 -130 2 1192 29 28 0 0 chr6 79678373 79678409 -69838628 + AT_rich Low_complexity Low_complexity 1 36 0 2 1192 355 342 149 44 chr6 79679663 79679911 -69837126 + B4A SINE B4 1 274 -18 2 1192 522 31 0 0 chr6 79679923 79679987 -69837050 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1192 1796 145 28 40 chr6 79680209 79680532 -69836505 + ORR1A2 LTR MaLR 1 319 -8 2 1192 32 0 0 0 chr6 79680997 79681029 -69836008 + AT_rich Low_complexity Low_complexity 1 32 0 2 1192 23 33 0 0 chr6 79681071 79681101 -69835936 + AT_rich Low_complexity Low_complexity 1 30 0 2 1192 246 277 15 0 chr6 79681101 79681166 -69835871 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1192 214 159 0 64 chr6 79681204 79681251 -69835786 - RSINE1 SINE B4 -33 132 89 2 1192 740 69 9 0 chr6 79681326 79681442 -69835595 + (TG)n Simple_repeat Simple_repeat 2 118 0 2 1192 321 277 15 0 chr6 79681449 79681514 -69835523 - RSINE1 SINE B4 -18 147 82 2 1192 502 300 130 75 chr6 79681741 79682325 -69834712 + L1MC4 LINE L1 829 1444 -4771 2 1192 237 345 16 81 chr6 79682406 79682529 -69834508 + PB1D10 SINE Alu 2 116 -1 2 1192 190 116 23 23 chr6 79682531 79682575 -69834462 + A-rich Low_complexity Low_complexity 2 45 0 2 1192 411 258 63 37 chr6 79682631 79682785 -69834252 - ORR1D2 LTR MaLR -3 418 233 2 1192 5644 138 36 18 chr6 79682845 79683810 -69833227 + Lx3B LINE L1 5989 6971 -2 3 1192 22 0 0 0 chr6 79683818 79683840 -69833197 + AT_rich Low_complexity Low_complexity 1 22 0 3 1192 321 365 0 52 chr6 79683846 79683999 -69833038 - ORR1D2 LTR MaLR -214 145 1 2 1192 491 357 67 50 chr6 79684160 79684443 -69832594 - B4 SINE B4 -4 288 1 3 1192 629 328 10 10 chr6 79685181 79685375 -69831662 + B3A SINE B2 1 194 -4 3 1192 373 278 134 70 chr6 79685709 79685895 -69831142 - B3A SINE B2 0 198 1 3 1192 1040 301 61 18 chr6 79686476 79686868 -69830169 + Lx7 LINE L1 6836 7244 -452 3 1192 1037 102 6 0 chr6 79686903 79687060 -69829977 + (CCCCCT)n Simple_repeat Simple_repeat 1 158 0 3 1192 536 275 87 10 chr6 79687235 79687430 -69829607 + B3 SINE B2 2 211 -5 3 1192 274 318 73 36 chr6 79687446 79687665 -69829372 + L1MA6 LINE L1 2370 2596 -3547 3 1192 439 348 18 18 chr6 79687750 79687914 -69829123 - B3A SINE B2 -33 165 2 3 1192 285 263 95 55 chr6 79687975 79688249 -69828788 + L1MA6 LINE L1 3029 3313 -2830 3 1192 1192 231 78 12 chr6 79688260 79688606 -69828431 + ORR1D1 LTR MaLR 1 369 -5 3 1192 616 281 74 37 chr6 79688646 79688945 -69828092 + L1MA6 LINE L1 5585 5894 -406 3 1192 241 231 55 0 chr6 79689102 79689193 -69827844 + L1MA6 LINE L1 6079 6174 -126 3 1192 459 281 14 43 chr6 79690225 79690366 -69826671 - RMER5 LTR ERV1 -7 527 391 3 1192 299 328 164 0 chr6 79690412 79690534 -69826503 - B3A SINE B2 -54 144 3 3 1192 272 130 0 42 chr6 79690540 79690636 -69826401 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 1192 22 70 0 0 chr6 79690732 79690775 -69826262 + AT_rich Low_complexity Low_complexity 1 43 0 3 1192 23 33 0 0 chr6 79690827 79690857 -69826180 + AT_rich Low_complexity Low_complexity 1 30 0 3 1192 406 299 43 43 chr6 79690913 79691053 -69825984 + ID_B1 SINE B4 81 220 -4 3 1192 850 315 134 34 chr6 79691063 79691432 -69825605 + Lx8 LINE L1 6974 7389 -84 3 1192 423 0 0 0 chr6 79691432 79691479 -69825558 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1192 360 0 0 0 chr6 79691479 79691518 -69825519 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1192 850 315 134 34 chr6 79691518 79691594 -69825443 + Lx8 LINE L1 7390 7464 -9 3 1193 700 274 5 88 chr6 79693717 79693933 -69823104 + B3A SINE B2 1 198 0 3 1193 192 97 0 0 chr6 79694059 79694090 -69822947 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 3 1193 324 299 30 0 chr6 79694370 79694470 -69822567 + PB1D10 SINE Alu 10 112 -37 3 1193 408 207 49 0 chr6 79694782 79694864 -69822173 - B3A SINE B2 -65 133 48 3 1193 459 286 120 0 chr6 79695404 79695537 -69821500 + B1F SINE Alu 1 149 0 3 1193 542 245 119 49 chr6 79695559 79695865 -69821172 + RLTR9A LTR ERVK 1 368 0 3 1193 692 218 6 0 chr6 79695892 79696071 -69820966 + GA-rich Low_complexity Low_complexity 1 180 0 3 1193 221 345 60 19 chr6 79696751 79696909 -69820128 + MIR SINE MIR 116 268 0 3 1193 22 35 0 0 chr6 79697900 79697929 -69819108 + AT_rich Low_complexity Low_complexity 1 29 0 3 1193 7198 143 41 28 chr6 79697929 79699237 -69817800 - Lx3A LINE L1 0 6981 5656 3 1193 303 261 29 0 chr6 79699305 79699374 -69817663 + B4A SINE B4 10 80 -212 3 1193 2930 85 25 0 chr6 79699429 79699829 -69817208 + L1_Mm LINE L1 5409 5818 -65 3 1193 1414 97 14 9 chr6 79699829 79700047 -69816990 + L1_Mus3 LINE L1 6413 6631 -7 3 1193 276 283 0 0 chr6 79700211 79700271 -69816766 - 4.5SRNA scRNA scRNA -3 91 32 3 1193 956 128 72 6 chr6 79700461 79700642 -69816395 + Lx2 LINE L1 6804 6996 -1 3 1193 203 258 32 11 chr6 79700645 79700739 -69816298 + (TAAA)n Simple_repeat Simple_repeat 2 97 0 3 1193 186 43 0 0 chr6 79700904 79700927 -69816110 + (TC)n Simple_repeat Simple_repeat 1 23 0 3 1193 1011 105 29 0 chr6 79700927 79701098 -69815939 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 3 1193 387 317 138 6 chr6 79701423 79701604 -69815433 + B3 SINE B2 1 205 -11 3 1193 529 296 15 0 chr6 79702378 79702510 -69814527 + RSINE1 SINE B4 1 134 -31 3 1193 49 66 0 0 chr6 79702719 79702810 -69814227 + AT_rich Low_complexity Low_complexity 1 91 0 3 1193 396 0 0 0 chr6 79703979 79704023 -69813014 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1193 381 238 225 0 chr6 79704211 79704362 -69812675 + B3A SINE B2 3 187 -11 3 1193 36 23 0 0 chr6 79704995 79705038 -69811999 + AT_rich Low_complexity Low_complexity 1 43 0 3 1193 255 316 159 13 chr6 79705043 79705200 -69811837 - B3A SINE B2 -18 180 1 3 1193 1073 233 91 53 chr6 79705741 79706081 -69810956 - Lx7 LINE L1 0 7696 7344 3 1193 914 279 119 34 chr6 79706083 79706554 -69810483 - Lx7 LINE L1 -1564 6132 5622 3 1193 1762 251 26 12 chr6 79706555 79706975 -69810062 + Lx6 LINE L1 6098 6523 -937 3 1193 632 146 7 24 chr6 79706983 79707119 -69809918 + ORR1B1 LTR MaLR 7 155 -239 3 1193 917 220 51 58 chr6 79707119 79707394 -69809643 + Lx7 LINE L1 6716 6988 -708 3 1193 4703 156 40 36 chr6 79707394 79708008 -69809029 - L1_Mur3 LINE L1 -1721 4159 3554 3 1193 3409 35 0 2 chr6 79708008 79708405 -69808632 - MTA_Mm LTR MaLR 0 396 1 3 1193 8537 62 4 1 chr6 79708405 79709500 -69807537 - MTA_Mm-int LTR MaLR 0 1098 1 3 1193 3277 46 2 2 chr6 79709500 79709894 -69807143 - MTA_Mm LTR MaLR 0 396 3 3 1193 4703 156 40 36 chr6 79709894 79710321 -69806716 - L1_Mur3 LINE L1 -2327 3553 3114 3 1193 220 184 0 0 chr6 79710409 79710447 -69806590 + CT-rich Low_complexity Low_complexity 1 38 0 3 1193 324 0 0 0 chr6 79710461 79710497 -69806540 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1193 601 359 6 0 chr6 79710505 79710672 -69806365 - B3A SINE B2 -30 168 1 3 1193 207 69 0 0 chr6 79710862 79710891 -69806146 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1193 238 313 41 123 chr6 79711313 79711484 -69805553 - MER58A DNA MER1_type -17 207 51 3 1193 3703 172 56 1 chr6 79711571 79711945 -69805092 - RMER6D LTR ERVK 0 720 332 3 1193 452 18 18 0 chr6 79711945 79712002 -69805035 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1193 3703 172 56 1 chr6 79712002 79712310 -69804727 - RMER6D LTR ERVK -389 331 2 3 1193 282 115 0 0 chr6 79712385 79712437 -69804600 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 1193 224 330 46 83 chr6 79713128 79713237 -69803800 - RSINE1 SINE B4 -19 146 42 3 1193 3884 44 50 0 chr6 79714191 79714670 -69802367 - RLTR1C LTR ERV1 0 503 1 3 1193 399 231 13 0 chr6 79714870 79714948 -69802089 + Lx8 LINE L1 7094 7172 -301 3 1193 265 347 90 23 chr6 79715099 79715276 -69801761 + Lx8 LINE L1 7208 7396 -77 3 1193 309 252 20 20 chr6 79715344 79715445 -69801592 + GA-rich Low_complexity Low_complexity 2 102 0 3 1193 22 35 0 0 chr6 79715921 79715950 -69801087 + AT_rich Low_complexity Low_complexity 1 29 0 3 1193 420 348 42 23 chr6 79717072 79717331 -69799706 - L1MEe LINE L1 -4337 517 254 3 1193 30 27 0 0 chr6 79717382 79717419 -69799618 + AT_rich Low_complexity Low_complexity 1 37 0 3 1193 1490 265 55 22 chr6 79718800 79719217 -69797820 - Lx6 LINE L1 -2 7458 7028 3 1193 269 111 0 87 chr6 79719880 79719949 -69797088 + A-rich Low_complexity Low_complexity 1 63 0 3 1193 3131 171 33 35 chr6 79720382 79720988 -69796049 - Lx2B LINE L1 -15 6985 6381 3 1193 198 0 0 0 chr6 79720988 79721010 -69796027 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 3 1193 258 171 0 0 chr6 79721025 79721095 -69795942 + T-rich Low_complexity Low_complexity 1 70 0 3 1193 2790 174 22 4 chr6 79721096 79721632 -69795405 - Lx2B LINE L1 -611 6389 5844 3 1193 1907 109 85 0 chr6 79721632 79721926 -69795111 + ORR1A2 LTR MaLR 1 319 -8 3 1193 18642 208 31 50 chr6 79721928 79723107 -69793930 - Lx2B LINE L1 -35 5848 4631 3 1193 513 0 0 0 chr6 79723107 79723164 -69793873 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 3 1193 18642 201 30 47 chr6 79723164 79726841 -69790196 - Lx2B LINE L1 -1253 4630 1079 3 1193 1970 162 31 44 chr6 79726835 79727248 -69789789 + Lx LINE L1 5141 5548 -329 3 1193 656 202 34 0 chr6 79727251 79727370 -69789667 + ETnERV2-int LTR ERVK 7070 7192 -214 3 1193 325 0 0 0 chr6 79727517 79727556 -69789481 - L1_Mm LINE L1 -3287 2596 2558 3 1193 6423 56 4 1 chr6 79727556 79728367 -69788670 + L1Md_F2 LINE L1 5770 6582 0 3 1193 2868 250 27 24 chr6 79728630 79729556 -69787481 + Lx LINE L1 5555 6480 -174 3 1193 299 221 179 46 chr6 79729556 79729902 -69787135 - RMER17D2 LTR ERVK -178 631 240 3 1193 300 53 0 0 chr6 79729984 79730022 -69787015 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 3 1193 705 128 0 0 chr6 79730883 79731008 -69786029 + (TG)n Simple_repeat Simple_repeat 2 126 0 3 1193 2816 176 5 32 chr6 79731197 79731435 -69785602 - L1_Mur2 LINE L1 -360 5517 5286 3 1193 232 25 75 0 chr6 79731435 79731475 -69785562 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1193 1037 91 7 0 chr6 79731475 79731618 -69785419 - B1_Mm SINE Alu -3 144 1 3 1193 2816 176 5 32 chr6 79731618 79731947 -69785090 - L1_Mur2 LINE L1 -592 5285 4965 3 1193 27 49 0 0 chr6 79731981 79732022 -69785015 + AT_rich Low_complexity Low_complexity 1 41 0 3 1193 216 214 0 0 chr6 79732076 79732132 -69784905 + CT-rich Low_complexity Low_complexity 1 56 0 3 1193 351 0 0 0 chr6 79732261 79732300 -69784737 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 3 1193 678 327 9 26 chr6 79732730 79732956 -69784081 - ID_B1 SINE B4 -1 223 2 3 1193 952 182 16 0 chr6 79733009 79733196 -69783841 - Lx2 LINE L1 0 6997 6808 3 1193 504 81 0 0 chr6 79733290 79733364 -69783673 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1193 425 374 20 27 chr6 79733597 79733891 -69783146 + B4A SINE B4 1 292 0 3 1193 1955 156 15 3 chr6 79733911 79734245 -69782792 + Lx3A LINE L1 6634 6971 -10 3 1193 180 0 0 0 chr6 79734252 79734272 -69782765 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 1193 197 132 12 73 chr6 79734399 79734481 -69782556 + (CAA)n Simple_repeat Simple_repeat 1 77 0 3 1193 189 121 0 0 chr6 79734854 79734887 -69782150 + (TATG)n Simple_repeat Simple_repeat 4 36 0 3 1193 217 378 0 13 chr6 79735285 79735360 -69781677 + RSINE1 SINE B4 3 76 -89 3 1193 23 0 0 0 chr6 79735473 79735496 -69781541 + AT_rich Low_complexity Low_complexity 1 23 0 3 1193 1782 148 20 7 chr6 79735500 79735805 -69781232 - Lx3A LINE L1 0 6981 6673 3 1193 235 121 17 17 chr6 79735893 79735952 -69781085 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1193 212 54 54 0 chr6 79735955 79735992 -69781045 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 3 1193 22 0 0 0 chr6 79735997 79736019 -69781018 + AT_rich Low_complexity Low_complexity 1 22 0 3 1193 564 277 28 47 chr6 79736822 79737034 -69780003 - B3 SINE B2 -6 210 3 4 1193 2018 235 36 7 chr6 79737478 79737923 -69779114 + Lx6 LINE L1 6999 7456 -4 4 1193 321 287 69 0 chr6 79738464 79738565 -69778472 - B3 SINE B2 -107 109 2 4 1193 267 299 92 18 chr6 79739239 79739348 -69777689 - PB1D9 SINE Alu -2 118 2 4 1193 2651 82 50 8 chr6 79739691 79740070 -69776967 - L1Md_F2 LINE L1 -12 6570 6176 4 1193 242 32 0 0 chr6 79740069 79740100 -69776937 - L1_Mus1 LINE L1 -449 6118 6088 4 1193 632 87 65 0 chr6 79740101 79740193 -69776844 + L1Md_T LINE L1 6012 6109 -473 4 1193 225 342 0 24 chr6 79740465 79740588 -69776449 + LTR86A2 LTR ERVL 365 484 -24 4 1193 465 273 15 29 chr6 79740720 79740856 -69776181 + Lx8 LINE L1 6411 6544 -929 4 1193 1602 138 124 0 chr6 79740874 79741165 -69775872 - IAPEY3_LTR LTR ERVK -5 327 1 4 1193 289 326 90 7 chr6 79741191 79741336 -69775701 + Lx8 LINE L1 6580 6736 -737 4 1193 337 374 63 39 chr6 79741373 79741831 -69775206 + Lx8 LINE L1 6864 7331 -142 4 1193 504 0 0 0 chr6 79741831 79741887 -69775150 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1193 337 374 63 39 chr6 79741887 79742013 -69775024 + Lx8 LINE L1 7332 7462 -11 4 1193 369 0 0 0 chr6 79743530 79743571 -69773466 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1193 593 313 39 51 chr6 79743579 79743912 -69773125 - Lx9 LINE L1 -318 7326 6998 4 1193 468 320 108 28 chr6 79744073 79744324 -69772713 - MTE2a LTR MaLR -57 322 52 4 1193 1090 298 89 5 chr6 79745273 79745701 -69771336 + Lx8 LINE L1 7006 7469 -4 4 1193 1499 204 30 49 chr6 79746398 79746725 -69770312 + ORR1B1 LTR MaLR 1 321 -8 4 1193 2747 267 187 51 chr6 79746729 79747429 -69769608 + ORR1B1-int LTR MaLR 1 708 -1255 4 1193 1390 77 0 0 chr6 79747429 79747612 -69769425 - L1_Mus1 LINE L1 0 6567 6385 4 1193 2747 267 187 51 chr6 79747612 79747823 -69769214 + ORR1B1-int LTR MaLR 709 988 -975 4 1193 2696 82 35 3 chr6 79747823 79748192 -69768845 - L1_Mus2 LINE L1 -1 6565 6185 4 1193 2747 220 132 22 chr6 79748192 79748917 -69768120 + ORR1B1-int LTR MaLR 824 1772 -191 4 1193 800 196 62 12 chr6 79749525 79749685 -69767352 + ORR1B1 LTR MaLR 3 170 -208 4 1193 393 247 99 73 chr6 79749699 79749951 -69767086 + RLTR12B LTR ERVK 14 265 -263 4 1193 986 169 52 10 chr6 79750180 79750372 -69766665 + ORR1B1 LTR MaLR 179 378 0 4 1193 233 351 13 13 chr6 79750399 79750477 -69766560 + MTE2a LTR MaLR 6 83 -296 4 1193 886 224 109 4 chr6 79750477 79750749 -69766288 + RMER20B LTR ERVK 1 410 -217 4 1193 495 0 0 0 chr6 79750761 79750816 -69766221 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1193 533 239 9 9 chr6 79750816 79750930 -69766107 + RMER20B LTR ERVK 490 603 -24 4 1193 842 303 1 0 chr6 79750928 79751144 -69765893 + MTE2a LTR MaLR 77 293 -86 4 1193 744 52 0 0 chr6 79751474 79751571 -69765466 + (TG)n Simple_repeat Simple_repeat 2 98 0 4 1193 243 0 0 0 chr6 79752035 79752062 -69764975 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1193 698 215 0 0 chr6 79753866 79753987 -69763050 + B3 SINE B2 1 121 -95 4 1193 189 0 0 0 chr6 79754017 79754038 -69762999 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1193 1161 196 4 30 chr6 79754038 79754269 -69762768 - ORR1A4 LTR MaLR -5 324 100 4 1193 193 29 59 0 chr6 79754269 79754303 -69762734 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 4 1193 652 221 28 30 chr6 79754319 79754471 -69762566 - ORR1B1 LTR MaLR -212 182 1 4 1193 231 125 42 0 chr6 79754471 79754515 -69762522 + B3 SINE B2 171 216 0 4 1193 745 268 15 15 chr6 79754542 79754743 -69762294 + Lx7 LINE L1 253 453 -7275 4 1193 28 0 0 0 chr6 79754743 79754771 -69762266 + AT_rich Low_complexity Low_complexity 1 28 0 4 1193 1974 148 106 6 chr6 79754832 79755191 -69761846 - Lx3A LINE L1 -1 6980 6586 4 1193 1398 206 40 3 chr6 79755257 79755584 -69761453 + Lx7 LINE L1 4909 5247 -633 4 1193 1692 279 40 9 chr6 79755588 79756128 -69760909 + Lx6 LINE L1 6500 7434 -26 4 1193 255 152 0 0 chr6 79756128 79756174 -69760863 + (TAG)n Simple_repeat Simple_repeat 2 47 0 4 1193 225 132 0 0 chr6 79756173 79756211 -69760826 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 1193 528 296 17 117 chr6 79756233 79756384 -69760653 + B3A SINE B2 27 176 -22 4 1193 345 24 0 0 chr6 79756384 79756426 -69760611 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1193 381 296 17 117 chr6 79756426 79756454 -69760583 + B2_Mm2 SINE B2 167 188 -7 4 1193 6607 226 84 68 chr6 79756459 79758864 -69758173 + Lx7 LINE L1 5253 7696 0 4 1193 24 32 0 0 chr6 79759758 79759789 -69757248 + AT_rich Low_complexity Low_complexity 1 31 0 4 1193 286 337 102 27 chr6 79761331 79761517 -69755520 + B3A SINE B2 15 214 -2 4 1193 24 0 0 0 chr6 79761781 79761805 -69755232 + AT_rich Low_complexity Low_complexity 1 24 0 4 1193 23 92 0 0 chr6 79762371 79762436 -69754601 + AT_rich Low_complexity Low_complexity 1 65 0 4 1193 4509 69 15 0 chr6 79762626 79763224 -69753813 + L1Md_F2 LINE L1 4979 5585 -298 4 1193 7482 75 9 0 chr6 79763225 79764212 -69752825 + L1Md_F2 LINE L1 5587 6582 0 4 1193 6632 95 35 2 chr6 79764735 79765330 -69751707 - L1_Mus1 LINE L1 0 6567 5971 4 1193 662 0 0 13 chr6 79765330 79765409 -69751628 + (TTC)n Simple_repeat Simple_repeat 1 78 0 4 1193 6632 102 35 1 chr6 79765409 79766001 -69751036 - L1_Mus1 LINE L1 -597 5970 5345 4 1193 7950 109 25 20 chr6 79765982 79767248 -69749789 + L1_Mm LINE L1 1754 3026 -2857 4 1193 2234 125 17 63 chr6 79767320 79767730 -69749307 - L1_Mus4 LINE L1 -4 6632 6242 4 1193 22 0 0 0 chr6 79768058 79768080 -69748957 + AT_rich Low_complexity Low_complexity 1 22 0 4 1193 237 342 8 0 chr6 79768173 79768290 -69748747 + LSU-rRNA_Hsa rRNA rRNA 3724 3841 -1194 4 1193 655 179 7 7 chr6 79768786 79768927 -69748110 + GA-rich Low_complexity Low_complexity 3 143 0 4 1193 33 43 0 0 chr6 79769349 79769396 -69747641 + AT_rich Low_complexity Low_complexity 1 47 0 4 1193 422 351 41 6 chr6 79769863 79770035 -69747002 - B4A SINE B4 -6 286 109 4 1193 1431 147 35 12 chr6 79770352 79770512 -69746525 + MTB_Mm LTR MaLR 1 161 -246 4 1193 4641 119 21 0 chr6 79770512 79771225 -69745812 + Lx3_Mus LINE L1 6271 6998 -11 4 1193 1431 147 35 12 chr6 79771225 79771318 -69745719 + MTB_Mm LTR MaLR 162 259 -148 4 1193 306 73 0 0 chr6 79771318 79771359 -69745678 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1193 405 358 17 0 chr6 79771992 79772171 -69744866 + B3A SINE B2 2 183 -15 4 1193 550 286 16 21 chr6 79772525 79772718 -69744319 - B3A SINE B2 -2 196 5 4 1193 21 36 0 0 chr6 79772895 79772923 -69744114 + AT_rich Low_complexity Low_complexity 1 28 0 4 1193 31 26 0 0 chr6 79773100 79773138 -69743899 + AT_rich Low_complexity Low_complexity 1 38 0 4 1193 227 325 138 31 chr6 79773500 79773543 -69743494 + ID_B1 SINE B4 80 223 -1 4 1193 268 276 149 0 chr6 79773543 79773630 -69743407 + B1F SINE Alu 48 147 -2 4 1193 695 95 0 0 chr6 79773663 79773758 -69743279 + L1VL1 LINE L1 486 580 -5842 4 1193 1084 204 114 47 chr6 79773766 79774065 -69742972 + IAPEY3_LTR LTR ERVK 14 332 0 4 1193 1825 120 113 118 chr6 79774065 79774489 -69742548 + MMERVK10C-int LTR ERVK 1 422 -7159 4 1193 856 124 52 0 chr6 79774592 79774745 -69742292 + MMERVK10C-int LTR ERVK 708 868 -6713 4 1193 691 228 144 0 chr6 79774725 79774892 -69742145 + IAPEY3-int LTR ERVK 313 503 -4903 4 1193 279 192 58 0 chr6 79775006 79775058 -69741979 + IAPEY3-int LTR ERVK 950 1004 -983 4 1193 266 270 49 20 chr6 79775121 79775223 -69741814 + IAPEY3-int LTR ERVK 1462 1566 -6015 4 1193 364 158 0 0 chr6 79775240 79775297 -69741740 + IAP-d-int LTR ERVK 447 503 -6039 4 1193 1344 138 107 0 chr6 79775297 79775522 -69741515 + IAP-d-int LTR ERVK 5007 5255 -1287 4 1193 1632 127 57 26 chr6 79775522 79775849 -69741188 + IAPEY3-int LTR ERVK 6965 7338 -342 4 1193 1318 221 49 12 chr6 79775866 79776210 -69740827 + IAPEz-int LTR ERVK 6125 6481 0 4 1193 1033 192 134 52 chr6 79776210 79776517 -69740520 + IAPEY3_LTR LTR ERVK 1 332 0 4 1193 10305 91 45 8 chr6 79776517 79776976 -69740061 + L1VL1 LINE L1 791 1247 -5391 4 1193 261 0 0 0 chr6 79776976 79777005 -69740032 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 4 1193 12693 116 17 147 chr6 79777005 79781194 -69735843 + L1VL1 LINE L1 1248 4698 -1185 4 1193 3169 132 24 2 chr6 79781196 79781706 -69735331 + L1_Mus3 LINE L1 6118 6638 0 4 1193 328 322 25 8 chr6 79782472 79782594 -69734443 + RSINE1 SINE B4 3 126 -39 4 1193 759 322 65 73 chr6 79783269 79783675 -69733362 - MTE2a LTR MaLR -14 405 10 4 1193 413 381 105 39 chr6 79783865 79784835 -69732202 - L2 LINE L2 -1641 1778 745 4 1193 3098 269 7 16 chr6 79785028 79785791 -69731246 - Lx5 LINE L1 -138 6912 6157 4 1193 4834 172 20 5 chr6 79785768 79786803 -69730234 - Lx5 LINE L1 -1103 5947 4886 4 1193 700 121 78 0 chr6 79786806 79786922 -69730115 + L1_Mur2 LINE L1 4391 4515 -1362 4 1193 683 170 20 8 chr6 79786930 79787093 -69729944 - Lx5 LINE L1 -976 4901 4745 4 1193 751 147 97 97 chr6 79787184 79787380 -69729657 - Lx3_Mus LINE L1 0 7009 6814 4 1193 2149 122 8 14 chr6 79787377 79787735 -69729302 - Lx5 LINE L1 -1177 4700 4345 4 1193 254 225 12 0 chr6 79787767 79787847 -69729190 + CT-rich Low_complexity Low_complexity 2 82 0 4 1193 517 281 64 6 chr6 79788150 79788322 -69728715 - B3A SINE B2 -15 183 2 4 1193 42 20 0 0 chr6 79788587 79788636 -69728401 + AT_rich Low_complexity Low_complexity 1 49 0 4 1193 5877 176 20 23 chr6 79788671 79789755 -69727282 - Lx2 LINE L1 -1 6996 5914 4 1193 230 0 33 0 chr6 79789755 79789785 -69727252 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1193 5877 176 20 23 chr6 79789785 79789878 -69727159 - Lx2 LINE L1 -1084 5913 5822 4 1193 183 42 0 0 chr6 79789885 79789909 -69727128 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1193 1745 84 4 74 chr6 79789921 79790191 -69726846 - L1_Mus2 LINE L1 0 6566 6316 4 1193 586 144 0 0 chr6 79790191 79790288 -69726749 - Lx2A1 LINE L1 -1227 5781 5685 4 1193 7449 110 13 13 chr6 79790290 79792269 -69724768 - L1_Mus3 LINE L1 0 6638 4669 4 1193 2491 165 2 2 chr6 79792268 79792682 -69724355 - Lx2A1 LINE L1 -201 5682 5269 4 1193 22 0 0 0 chr6 79792814 79792836 -69724201 + AT_rich Low_complexity Low_complexity 1 22 0 4 1193 321 396 74 37 chr6 79793146 79793390 -69723647 + LTR16A LTR ERVL 134 386 -65 4 1193 1091 223 0 10 chr6 79793541 79793749 -69723288 - MTC LTR MaLR -15 406 201 4 1193 293 43 43 0 chr6 79793867 79793913 -69723124 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 4 1193 1035 50 0 7 chr6 79793913 79794054 -69722983 - B1_Mus1 SINE Alu -2 146 7 4 1193 271 347 53 0 chr6 79794340 79794435 -69722602 - B1F SINE Alu -37 112 13 4 1193 192 77 0 0 chr6 79795040 79795066 -69721971 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1193 337 244 60 12 chr6 79797692 79797775 -69719262 - B4 SINE B4 -1 291 205 4 1193 713 232 290 14 chr6 79797778 79798071 -69718966 + ORR1D1 LTR MaLR 1 374 0 4 1193 4576 263 43 57 chr6 79798082 79799098 -69717939 + ORR1D1-int LTR MaLR 28 1068 -302 4 1193 962 97 0 65 chr6 79799098 79799253 -69717784 + B1_Mus1 SINE Alu 2 146 -2 4 1193 4576 263 43 57 chr6 79799253 79799597 -69717440 + ORR1D1-int LTR MaLR 1069 1370 0 4 1193 1200 253 82 34 chr6 79799597 79799953 -69717084 + ORR1D1 LTR MaLR 1 373 -1 4 1193 1591 242 47 27 chr6 79799961 79800364 -69716673 - MTD LTR MaLR -8 411 1 4 1193 714 279 68 10 chr6 79800365 79800557 -69716480 - B4 SINE B4 -89 203 1 4 1193 774 52 0 34 chr6 79801617 79801736 -69715301 + (TTTC)n Simple_repeat Simple_repeat 4 118 0 4 1193 1344 24 0 0 chr6 79802482 79802646 -69714391 + (CTGGGG)n Simple_repeat Simple_repeat 3 166 0 4 1193 457 331 58 21 chr6 79802646 79802837 -69714200 + B3 SINE B2 9 206 -10 4 1193 7332 37 1 0 chr6 79802934 79803807 -69713230 - L1Md_T LINE L1 -1 6581 5708 4 1193 2006 22 0 0 chr6 79803805 79804034 -69713003 + L1Md_T LINE L1 5477 5705 -178 4 1193 23 0 0 0 chr6 79804662 79804685 -69712352 + AT_rich Low_complexity Low_complexity 1 23 0 4 1193 2754 169 26 15 chr6 79804796 79805331 -69711706 - Lx LINE L1 -865 5018 4478 4 1193 6639 143 40 19 chr6 79805331 79806952 -69710085 + Lx LINE L1 5016 6646 -8 4 1193 233 208 38 0 chr6 79807229 79807282 -69709755 - ORR1E LTR MaLR 0 359 305 5 1193 3267 121 2 22 chr6 79807346 79807851 -69709186 - Lx2 LINE L1 0 6997 6503 5 1193 450 0 0 0 chr6 79807896 79807946 -69709091 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1193 1058 304 52 54 chr6 79808668 79808874 -69708163 + MTE2b LTR MaLR 1 190 -189 5 1193 1088 252 84 42 chr6 79808874 79809230 -69707807 - ORR1D1 LTR MaLR -3 371 1 5 1193 1058 304 52 54 chr6 79809230 79809392 -69707645 + MTE2b LTR MaLR 191 368 -11 5 1193 227 358 40 7 chr6 79809414 79809566 -69707471 - L1MC1 LINE L1 -66 6267 6111 5 1193 22 35 0 0 chr6 79810038 79810067 -69706970 + AT_rich Low_complexity Low_complexity 1 29 0 5 1193 348 322 66 16 chr6 79810094 79810337 -69706700 - L1MB1 LINE L1 -230 5938 5684 5 1193 693 36 0 0 chr6 79810337 79810421 -69706616 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 1193 465 50 0 0 chr6 79810421 79810481 -69706556 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1193 406 369 30 49 chr6 79810530 79810795 -69706242 - MER89 LTR ERV1 -92 467 208 5 1193 572 328 82 8 chr6 79811361 79811628 -69705409 - ORR1E LTR MaLR 0 359 73 5 1193 416 226 37 43 chr6 79812189 79812311 -69704726 - PB1D10 SINE Alu 0 127 5 5 1193 212 305 39 78 chr6 79812235 79812338 -69704699 - B4 SINE B4 -125 167 69 5 1193 491 69 14 0 chr6 79812958 79813030 -69704007 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1193 415 311 123 25 chr6 79813191 79813435 -69703602 + L1M2 LINE L1 4650 4917 -1226 5 1193 654 99 0 0 chr6 79814166 79814257 -69702780 + L1VL1 LINE L1 639 729 -5693 5 1193 263 316 71 19 chr6 79814277 79814432 -69702605 - Lx8 LINE L1 -139 7334 7172 5 1193 185 108 0 26 chr6 79814451 79814489 -69702548 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 5 1193 617 321 48 40 chr6 79814534 79814562 -69702475 - ORR1E LTR MaLR 0 359 332 5 1193 360 0 0 0 chr6 79814562 79814602 -69702435 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1193 617 321 48 40 chr6 79814602 79814927 -69702110 - ORR1E LTR MaLR -28 331 5 5 1193 842 265 93 57 chr6 79815693 79816056 -69700981 + MTD LTR MaLR 1 405 -14 5 1193 461 271 15 40 chr6 79816633 79816833 -69700204 + B3A SINE B2 1 195 -3 5 1193 1101 275 149 9 chr6 79817430 79817779 -69699258 + MTD LTR MaLR 18 415 -4 5 1193 247 259 0 0 chr6 79817786 79817844 -69699193 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 5 1193 268 280 0 0 chr6 79817824 79817934 -69699103 + (CATATA)n Simple_repeat Simple_repeat 1 110 0 5 1193 739 303 44 44 chr6 79819235 79819508 -69697529 + B4A SINE B4 1 273 -19 5 1193 476 366 0 0 chr6 79819597 79819731 -69697306 + B1F SINE Alu 8 141 -8 5 1193 521 348 7 0 chr6 79819760 79819901 -69697136 + RSINE1 SINE B4 4 145 -20 5 1193 455 73 15 0 chr6 79819914 79819982 -69697055 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1193 181 0 69 0 chr6 79819990 79820019 -69697018 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 5 1193 658 134 16 0 chr6 79820073 79820200 -69696837 + (TA)n Simple_repeat Simple_repeat 2 130 0 5 1193 3850 31 0 0 chr6 79820556 79821008 -69696029 - L1Md_T LINE L1 -1 6581 6130 5 1193 325 243 4 0 chr6 79821734 79821806 -69695231 + B4 SINE B4 3 76 -148 5 1193 621 148 27 27 chr6 79821815 79821875 -69695162 + RMER6C LTR ERVK 1 60 -630 5 1193 4947 54 41 5 chr6 79821875 79822527 -69694510 - L1Md_F3 LINE L1 0 6584 5909 5 1193 621 148 27 27 chr6 79822527 79822577 -69694460 + RMER6C LTR ERVK 61 111 -579 5 1193 508 157 0 46 chr6 79822561 79822656 -69694381 + MT2B LTR ERVL 181 259 -325 5 1193 337 296 61 53 chr6 79822656 79822770 -69694267 + B1_Mm SINE Alu 3 117 -30 5 149 798 184 67 51 chr6 79822784 79822962 -69694075 + RMER6C LTR ERVK 509 689 -1 5 1194 7301 82 27 11 chr6 79823059 79824091 -69692946 + L1_Mus3 LINE L1 5588 6636 -2 5 1194 1410 45 0 6 chr6 79824816 79824994 -69692043 - L1_Mus3 LINE L1 -731 5907 5731 5 1194 721 81 0 10 chr6 79824992 79825092 -69691945 - L1Md_F2 LINE L1 -488 6094 5996 5 1194 400 182 0 15 chr6 79825092 79825159 -69691878 - B1_Mur4 SINE Alu -84 66 1 5 1194 22 35 0 0 chr6 79825232 79825261 -69691776 + AT_rich Low_complexity Low_complexity 1 29 0 5 1194 27 73 0 0 chr6 79825461 79825516 -69691521 + AT_rich Low_complexity Low_complexity 1 55 0 5 1194 413 347 18 89 chr6 79826201 79826402 -69690635 - B3A SINE B2 -36 180 1 5 1194 729 222 7 0 chr6 79826728 79826863 -69690174 + B3 SINE B2 1 136 -80 5 1194 768 129 0 0 chr6 79826886 79827010 -69690027 + (CATA)n Simple_repeat Simple_repeat 4 127 0 5 1194 243 0 0 0 chr6 79827366 79827393 -69689644 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 1194 600 14 0 0 chr6 79828243 79828312 -69688725 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1194 1819 213 0 44 chr6 79828337 79828725 -69688312 + RLTR14 LTR ERV1 10 380 -2 5 1194 465 19 0 0 chr6 79828725 79828779 -69688258 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1194 313 288 0 0 chr6 79828879 79828945 -69688092 - B3A SINE B2 -132 66 1 5 1194 465 316 76 40 chr6 79829204 79829428 -69687609 - RMER15 LTR ERVL -14 561 330 5 1194 374 326 70 21 chr6 79829628 79829869 -69687168 - RMER5 LTR ERV1 -11 523 271 5 1194 951 176 0 216 chr6 79829881 79830163 -69686874 + RMER19B LTR ERVK 1 221 -681 5 1194 2653 153 77 23 chr6 79830192 79830714 -69686323 + RMER19B LTR ERVK 341 890 -12 5 1194 368 294 155 15 chr6 79830731 79830931 -69686106 - RMER5 LTR ERV1 -274 260 33 5 1194 843 182 7 0 chr6 79831274 79831422 -69685615 - ORR1B2 LTR MaLR 0 367 219 5 1194 323 333 20 0 chr6 79831415 79831514 -69685523 + RMER5 LTR ERV1 221 321 -213 5 1194 454 245 145 47 chr6 79831851 79832044 -69684993 + RMER5 LTR ERV1 301 512 -22 5 1194 277 189 19 0 chr6 79832532 79832585 -69684452 + U4 snRNA snRNA 17 70 -75 5 1194 311 255 197 20 chr6 79833050 79833202 -69683835 - Lx8 LINE L1 -4 7469 7291 5 1194 1060 338 63 25 chr6 79833203 79833853 -69683184 - Lx8 LINE L1 -687 6786 6112 5 1194 440 77 15 0 chr6 79833942 79834007 -69683030 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1194 400 295 9 35 chr6 79834163 79834279 -69682758 + RSINE1 SINE B4 3 115 -50 5 1194 200 0 0 91 chr6 79834309 79834353 -69682684 + (TTTTA)n Simple_repeat Simple_repeat 5 44 0 5 1194 2063 87 7 7 chr6 79834491 79834782 -69682255 - L1_Mus3 LINE L1 -6 6632 6342 5 1194 1350 85 0 0 chr6 79834782 79834959 -69682078 + L1_Mus3 LINE L1 6156 6332 -306 5 1194 404 254 108 65 chr6 79834972 79835028 -69682009 - B2_Mm2 SINE B2 -1 194 132 5 1194 426 20 0 0 chr6 79835028 79835079 -69681958 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1194 422 217 141 10 chr6 79835079 79835207 -69681830 - B3A SINE B2 -64 131 2 5 1194 327 246 14 0 chr6 79835818 79835887 -69681150 + B4A SINE B4 2 71 -221 5 1194 1076 306 52 7 chr6 79836430 79837021 -69680016 - Lx6 LINE L1 -567 6893 6082 5 1194 560 216 17 0 chr6 79837419 79837535 -69679502 + RSINE1 SINE B4 12 129 -36 5 1194 265 24 23 23 chr6 79838185 79838228 -69678809 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 5 1194 573 162 10 29 chr6 79838232 79838334 -69678703 - B1_Mur3 SINE Alu 0 149 50 5 1194 233 218 22 152 chr6 79838270 79838362 -69678675 - MT2B2 LTR ERVL -320 264 185 5 1194 180 0 0 0 chr6 79838362 79838382 -69678655 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 1194 504 0 0 0 chr6 79838432 79838488 -69678549 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 1194 1223 176 9 16 chr6 79838588 79838826 -69678211 + Lx2B LINE L1 6741 6949 -51 5 1194 768 292 86 26 chr6 79838896 79839128 -69677909 - MTEa LTR MaLR -133 246 1 5 1194 21 0 0 0 chr6 79839617 79839638 -69677399 + AT_rich Low_complexity Low_complexity 1 21 0 5 1194 198 103 0 0 chr6 79839952 79839981 -69677056 + (TATG)n Simple_repeat Simple_repeat 4 32 0 5 1194 976 256 125 54 chr6 79840167 79840518 -69676519 - MTEa LTR MaLR -3 376 1 5 1194 429 316 15 58 chr6 79840556 79840761 -69676276 + B3A SINE B2 2 197 -1 5 1194 286 275 55 0 chr6 79841505 79841596 -69675441 + L1M5 LINE L1 5622 5717 -445 5 1194 259 161 0 18 chr6 79841622 79841679 -69675358 - MT2A LTR ERVL 0 533 478 5 1194 313 357 54 0 chr6 79841740 79841869 -69675168 - MT2A LTR ERVL -71 462 327 5 1194 1128 296 63 21 chr6 79842064 79842588 -69674449 + Lx8 LINE L1 6877 7422 -51 5 1194 213 39 0 0 chr6 79842652 79842678 -69674359 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1194 31 26 0 0 chr6 79842692 79842730 -69674307 + AT_rich Low_complexity Low_complexity 1 38 0 5 1194 21 0 0 0 chr6 79842900 79842921 -69674116 + AT_rich Low_complexity Low_complexity 1 21 0 5 1194 413 344 69 64 chr6 79843193 79843365 -69673672 - B3A SINE B2 -13 203 41 5 1194 1381 263 58 5 chr6 79843365 79843763 -69673274 + MTD LTR MaLR 1 419 0 5 1194 413 345 81 23 chr6 79843763 79843792 -69673245 - B3A SINE B2 -158 40 1 5 1194 292 352 112 15 chr6 79843883 79844143 -69672894 + B4A SINE B4 4 288 -4 5 1194 223 263 0 17 chr6 79845201 79845259 -69671778 + CT-rich Low_complexity Low_complexity 2 58 0 5 1194 418 302 103 11 chr6 79845323 79845497 -69671540 - B4A SINE B4 -22 270 81 5 1194 337 300 8 16 chr6 79845565 79845687 -69671350 + CT-rich Low_complexity Low_complexity 4 124 0 5 1194 26 0 0 0 chr6 79846404 79846430 -69670607 + AT_rich Low_complexity Low_complexity 1 26 0 5 1194 379 317 32 16 chr6 79846453 79846642 -69670395 + B3A SINE B2 1 192 -6 5 1194 28 48 0 0 chr6 79846781 79846823 -69670214 + AT_rich Low_complexity Low_complexity 1 42 0 5 1194 484 344 37 25 chr6 79847228 79847389 -69669648 + RSINE1 SINE B4 3 165 0 5 1194 273 277 0 0 chr6 79847396 79847508 -69669529 + (CA)n Simple_repeat Simple_repeat 2 113 0 5 1194 33 66 0 0 chr6 79848040 79848101 -69668936 + AT_rich Low_complexity Low_complexity 1 61 0 5 1194 459 307 60 32 chr6 79848466 79848651 -69668386 + ORR1E LTR MaLR 139 328 -31 5 1194 206 22 85 21 chr6 79848655 79848702 -69668335 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 5 1194 576 121 0 0 chr6 79848809 79848900 -69668137 + (TTCC)n Simple_repeat Simple_repeat 3 93 0 5 1194 665 135 269 0 chr6 79848902 79849043 -69667994 - Lx3A LINE L1 -1 6980 6802 6 1194 2969 15 0 0 chr6 79849043 79849380 -69667657 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1194 55001 21 20 7 chr6 79849380 79855770 -69661267 - IAPEz-int LTR ERVK 0 6481 8 6 1194 2969 15 0 0 chr6 79855770 79856107 -69660930 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1194 4392 127 18 1 chr6 79856107 79856779 -69660258 - Lx3A LINE L1 -174 6807 6125 6 1194 305 330 10 0 chr6 79857174 79857277 -69659760 + PB1D9 SINE Alu 1 104 -16 6 1194 8502 196 37 19 chr6 79857368 79860125 -69656912 + Lx5 LINE L1 4223 7043 -7 6 1194 420 262 157 10 chr6 79860500 79860697 -69656340 + L1MA9 LINE L1 6085 6310 -2 6 1194 587 112 10 0 chr6 79860753 79860851 -69656186 + (TA)n Simple_repeat Simple_repeat 2 100 0 6 1194 648 346 32 20 chr6 79861523 79861771 -69655266 - B4 SINE B4 -40 252 2 6 1194 215 194 0 31 chr6 79862750 79862766 -69654271 + (CATATA)n Simple_repeat Simple_repeat 4 18 0 6 1194 587 71 0 12 chr6 79862766 79862852 -69654185 + (TG)n Simple_repeat Simple_repeat 1 85 0 6 1194 215 194 0 31 chr6 79862852 79862899 -69654138 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 6 1194 541 355 76 27 chr6 79863007 79863230 -69653807 + B4A SINE B4 53 286 -6 6 1194 426 265 36 14 chr6 79863794 79863932 -69653105 - MER5A1 DNA MER1_type -19 147 7 6 1194 239 328 26 118 chr6 79864016 79864168 -69652869 - L2a LINE L2 -3 3423 3286 6 1194 720 242 7 20 chr6 79864235 79864387 -69652650 + B3 SINE B2 3 152 -64 6 1194 621 27 0 0 chr6 79864549 79864624 -69652413 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 6 1194 209 33 33 0 chr6 79865338 79865368 -69651669 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1194 525 300 23 8 chr6 79865368 79865499 -69651538 - B1F2 SINE Alu -11 138 6 6 1194 303 85 0 0 chr6 79867133 79867180 -69649857 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1194 393 248 28 14 chr6 79867484 79867627 -69649410 - MER33 DNA MER1_type -45 279 135 6 1194 888 288 93 3 chr6 79867924 79868269 -69648768 + MTEb LTR MaLR 1 376 -3 6 1194 246 345 83 45 chr6 79868464 79868728 -69648309 - B4 SINE B4 -18 274 1 6 1194 1279 285 88 23 chr6 79869041 79869223 -69647814 + MT2A LTR ERVL 1 183 -350 6 1194 219 69 0 0 chr6 79869223 79869252 -69647785 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6 1194 1279 285 88 23 chr6 79869252 79869503 -69647534 + MT2A LTR ERVL 184 461 -72 6 1194 762 300 9 28 chr6 79870388 79870604 -69646433 - B3 SINE B2 -2 214 3 6 1194 791 177 0 25 chr6 79870615 79870777 -69646260 + L1_Mur2 LINE L1 5141 5298 -579 6 1194 2368 245 115 8 chr6 79870771 79871405 -69645632 + Lx5 LINE L1 6346 7047 -3 6 1194 625 295 25 111 chr6 79871416 79871614 -69645423 - B3 SINE B2 -14 181 1 6 1194 8284 44 2 1 chr6 79871626 79873108 -69643929 - L1Md_F2 LINE L1 -1 6581 5099 6 1194 3165 100 53 11 chr6 79873081 79873555 -69643482 - L1Md_F2 LINE L1 -15 6567 6074 6 1194 221 118 0 0 chr6 79873612 79873646 -69643391 - B3A SINE B2 -162 36 3 6 1194 226 74 0 0 chr6 79874967 79874994 -69642043 + Lx LINE L1 6155 6181 -473 6 1194 398 319 0 0 chr6 79875403 79875497 -69641540 + B3A SINE B2 47 140 -58 6 1194 354 100 0 0 chr6 79875507 79875567 -69641470 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1194 512 314 7 28 chr6 79875670 79875814 -69641223 + RSINE1 SINE B4 3 143 -22 6 1194 1171 187 91 0 chr6 79875906 79876162 -69640875 - Lx5 LINE L1 -1183 5867 5576 6 1194 1060 96 18 0 chr6 79876162 79876329 -69640708 + (TTTTC)n Simple_repeat Simple_repeat 3 172 0 6 1194 519 45 0 0 chr6 79876332 79876398 -69640639 + (TTTC)n Simple_repeat Simple_repeat 1 66 0 6 1194 1151 226 107 7 chr6 79876398 79876445 -69640592 - Lx5 LINE L1 -305 5575 5527 6 1194 1078 307 63 44 chr6 79876450 79877067 -69639970 + Lx6 LINE L1 6500 7399 -61 6 1194 2612 127 9 76 chr6 79877529 79877990 -69639047 - RLTR23 LTR ERV1 0 430 1 6 1194 249 33 0 0 chr6 79878046 79878076 -69638961 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1194 1056 186 96 13 chr6 79878378 79878490 -69638547 + Lx LINE L1 6405 6515 -139 6 1194 261 83 0 0 chr6 79878490 79878526 -69638511 + (TGGG)n Simple_repeat Simple_repeat 1 36 0 6 1194 1056 186 96 13 chr6 79878526 79878642 -69638395 + Lx LINE L1 6516 6651 -3 6 1194 216 97 0 0 chr6 79878660 79878691 -69638346 + (TAAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1194 22 35 0 0 chr6 79878807 79878836 -69638201 + AT_rich Low_complexity Low_complexity 1 29 0 6 1194 511 248 14 50 chr6 79878913 79879053 -69637984 + B1_Mur2 SINE Alu 5 139 -10 6 1194 24 0 0 0 chr6 79879900 79879924 -69637113 + AT_rich Low_complexity Low_complexity 1 24 0 6 1194 590 291 47 13 chr6 79880434 79880667 -69636370 + Lx8 LINE L1 7224 7464 -9 6 1194 30 59 0 0 chr6 79880667 79880718 -69636319 + AT_rich Low_complexity Low_complexity 1 51 0 6 1194 23 33 0 0 chr6 79881381 79881411 -69635626 + AT_rich Low_complexity Low_complexity 1 30 0 6 1194 483 297 78 31 chr6 79881524 79881715 -69635322 + ID_B1 SINE B4 19 218 -6 6 1194 209 200 40 0 chr6 79881717 79881767 -69635270 + A-rich Low_complexity Low_complexity 2 53 0 6 1194 749 263 17 55 chr6 79882152 79882333 -69634704 - B3 SINE B2 -42 174 1 6 1194 442 330 30 95 chr6 79882374 79882605 -69634432 + B3A SINE B2 1 216 0 6 1194 246 152 0 0 chr6 79882605 79882664 -69634373 + A-rich Low_complexity Low_complexity 5 63 0 6 1194 368 91 0 15 chr6 79882762 79882829 -69634208 + (TAAA)n Simple_repeat Simple_repeat 4 69 0 6 1194 460 401 38 14 chr6 79882964 79883174 -69633863 + B3A SINE B2 2 216 0 6 1194 2451 147 2 79 chr6 79884069 79884535 -69632502 - RLTR23 LTR ERV1 0 430 1 6 1194 231 36 0 0 chr6 79884541 79884569 -69632468 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 6 1194 245 279 62 68 chr6 79885217 79885363 -69631674 + L1MCa LINE L1 1004 1148 -4897 6 1194 505 243 145 42 chr6 79885368 79885561 -69631476 + B3 SINE B2 3 215 -1 6 1194 1116 95 0 0 chr6 79885626 79885773 -69631264 + B1_Mus2 SINE Alu 1 147 0 6 1194 578 176 10 10 chr6 79886032 79886123 -69630914 - RMER15 LTR ERVL -2 573 483 6 1194 271 311 180 36 chr6 79886123 79886373 -69630664 - RLTR24 LTR ERV1 0 529 244 6 1194 3488 40 33 0 chr6 79886445 79886867 -69630170 - RLTR10C LTR ERVK 0 436 1 6 1194 1432 209 251 5 chr6 79886980 79887370 -69629667 - RMER15 LTR ERVL -89 486 1 6 1194 385 311 161 5 chr6 79887376 79887599 -69629438 + L1MCa LINE L1 1437 1694 -5057 6 1194 291 303 97 35 chr6 79888833 79888946 -69628091 - RMER10B LTR ERVL -10 388 269 6 1194 363 333 124 31 chr6 79889275 79889436 -69627601 + MTE2a LTR MaLR 152 327 -52 6 1194 22 0 0 0 chr6 79889436 79889458 -69627579 + AT_rich Low_complexity Low_complexity 1 22 0 6 1194 29 0 0 0 chr6 79890017 79890046 -69626991 + AT_rich Low_complexity Low_complexity 1 29 0 6 1194 252 310 109 10 chr6 79890207 79890308 -69626729 + PB1D7 SINE Alu 3 113 -7 6 1194 600 14 0 0 chr6 79890444 79890513 -69626524 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 1194 6340 145 32 6 chr6 79890539 79891601 -69625436 + Lx2 LINE L1 5908 6997 0 6 1194 183 80 0 0 chr6 79891865 79891890 -69625147 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 1194 354 297 113 60 chr6 79891993 79892258 -69624779 + L1MC3 LINE L1 5588 5866 -1919 6 1194 33805 94 8 7 chr6 79892716 79896514 -69620523 + L1Md_F2 LINE L1 366 4169 -1714 6 1194 2513 91 9 14 chr6 79896514 79896861 -69620176 - IAPLTR4 LTR ERVK 0 345 1 6 1194 33805 78 1 2 chr6 79896861 79898781 -69618256 + L1Md_F2 LINE L1 4170 6085 -497 6 1194 477 34 0 0 chr6 79899003 79899062 -69617975 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1194 535 296 20 14 chr6 79899065 79899212 -69617825 - B3A SINE B2 -48 150 3 6 1194 24 53 0 0 chr6 79901338 79901376 -69615661 + AT_rich Low_complexity Low_complexity 1 38 0 6 1194 207 0 0 0 chr6 79901666 79901689 -69615348 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1194 498 333 66 5 chr6 79901703 79901899 -69615138 - B3 SINE B2 0 216 9 6 1194 27 29 0 0 chr6 79902274 79902308 -69614729 + AT_rich Low_complexity Low_complexity 1 34 0 6 1194 387 357 72 32 chr6 79902484 79902762 -69614275 + B4A SINE B4 3 291 -1 6 1194 512 266 16 75 chr6 79903697 79903725 -69613312 - B3A SINE B2 -3 195 167 6 1194 375 23 0 0 chr6 79903725 79903769 -69613268 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1194 512 266 16 75 chr6 79903769 79903927 -69613110 - B3A SINE B2 -32 166 21 6 1194 299 322 11 17 chr6 79904291 79904471 -69612566 + (TA)n Simple_repeat Simple_repeat 1 179 0 6 1194 25 0 0 0 chr6 79905516 79905541 -69611496 + AT_rich Low_complexity Low_complexity 1 25 0 6 1194 6757 90 14 3 chr6 79905606 79907225 -69609812 + MusHAL1 LINE L1 7 1642 -1711 6 1194 3833 159 1 0 chr6 79907222 79907877 -69609160 + L1_Mm LINE L1 5228 5883 0 6 1194 3039 200 4 0 chr6 79907897 79908456 -69608581 + Lx LINE L1 6094 6654 0 6 1194 291 226 69 129 chr6 79908613 79908778 -69608259 - L1MC3 LINE L1 -953 7042 6885 6 1194 263 333 107 58 chr6 79909203 79909324 -69607713 + B3A SINE B2 57 183 -15 6 1194 36571 35 12 32 chr6 79909736 79911383 -69605654 - L1Md_T LINE L1 0 6582 4955 6 1194 230 167 46 77 chr6 79911383 79911448 -69605589 + RMER20A LTR ERVK 186 248 -268 6 1194 36571 35 12 32 chr6 79911448 79914326 -69602711 - L1Md_T LINE L1 0 4954 2107 6 1194 7382 5 0 12 chr6 79914326 79914600 -69602437 - L1Md_A LINE L1 0 6582 6314 6 1194 3405 23 5 0 chr6 79914600 79914994 -69602043 + MTA_Mm LTR MaLR 1 396 0 6 1194 9303 24 3 1 chr6 79914994 79916088 -69600949 + MTA_Mm-int LTR MaLR 1 1096 -2 6 1194 3405 23 5 0 chr6 79916090 79916484 -69600553 + MTA_Mm LTR MaLR 1 396 0 6 1194 7382 5 0 12 chr6 79916484 79917043 -69599994 - L1Md_A LINE L1 -269 6313 5756 6 1194 36571 80 48 29 chr6 79917043 79918857 -69598180 - L1Md_T LINE L1 -3777 2106 275 6 1194 768 366 65 34 chr6 79918901 79919521 -69597516 - Lx8 LINE L1 -227 7246 6608 6 1194 34 24 0 0 chr6 79920585 79920626 -69596411 + AT_rich Low_complexity Low_complexity 1 41 0 6 1194 625 272 162 4 chr6 79920969 79921216 -69595821 - Lx8 LINE L1 -7 7466 7181 6 1194 351 271 118 127 chr6 79921223 79921334 -69595703 - MT2A LTR ERVL 0 601 491 6 1194 453 36 0 0 chr6 79921334 79921389 -69595648 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1194 351 271 118 127 chr6 79921389 79921505 -69595532 - MT2A LTR ERVL -111 490 376 6 1194 407 150 0 0 chr6 79921483 79921543 -69595494 - MT2A LTR ERVL -380 153 94 6 1194 723 196 39 39 chr6 79921512 79921666 -69595371 - MT2A LTR ERVL -374 159 6 6 1194 662 266 173 9 chr6 79922330 79922589 -69594448 - MTE2b LTR MaLR -86 293 1 6 1194 198 0 0 0 chr6 79922633 79922655 -69594382 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 1194 15687 167 30 8 chr6 79924606 79928757 -69588280 + Lx2 LINE L1 2753 6997 0 7 1194 346 118 0 0 chr6 79929066 79929117 -69587920 - ORR1D1 LTR MaLR 0 374 324 7 1194 1561 210 32 19 chr6 79929117 79929486 -69587551 + ORR1D1 LTR MaLR 1 374 0 7 1194 1312 290 79 25 chr6 79929487 79930059 -69586978 - Tigger1 DNA MER2_type -1136 1282 680 7 1194 195 42 0 0 chr6 79930066 79930090 -69586947 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 7 1194 3353 64 18 0 chr6 79930099 79930538 -69586499 - L1Md_F3 LINE L1 -14 6570 6124 7 1194 556 289 214 12 chr6 79930548 79930800 -69586237 + MTEa LTR MaLR 34 336 -43 7 1194 803 344 150 20 chr6 79930829 79931437 -69585600 - Tigger1 DNA MER2_type -1729 689 3 7 1194 306 188 52 115 chr6 79932286 79932382 -69584655 - RSINE1 SINE B4 0 165 76 7 1194 3538 235 30 16 chr6 79932484 79933207 -69583830 + Lx5 LINE L1 6302 7034 -16 7 1194 231 36 0 0 chr6 79933207 79933235 -69583802 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 7 1194 3538 235 30 16 chr6 79933235 79933250 -69583787 + Lx5 LINE L1 7035 7050 0 7 1194 450 0 0 0 chr6 79933745 79933795 -69583242 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1194 355 267 22 0 chr6 79933809 79933899 -69583138 - Lx7 LINE L1 -398 7298 7207 7 1194 357 196 254 18 chr6 79933999 79934113 -69582924 - B1_Mus1 SINE Alu -7 141 1 7 1194 22 0 0 0 chr6 79934118 79934140 -69582897 + AT_rich Low_complexity Low_complexity 1 22 0 7 1194 419 244 0 29 chr6 79934141 79934280 -69582757 - Lx7 LINE L1 -153 7543 7409 7 1194 1329 201 3 3 chr6 79934361 79934671 -69582366 - L1_Mur3 LINE L1 -2435 3445 3136 7 1194 588 319 22 0 chr6 79934734 79934872 -69582165 - RSINE1 SINE B4 0 165 25 7 1194 22 70 0 0 chr6 79935025 79935068 -69581969 + AT_rich Low_complexity Low_complexity 1 43 0 7 1194 590 310 27 5 chr6 79935068 79935256 -69581781 - RMER15 LTR ERVL 0 575 384 7 1194 270 0 0 0 chr6 79935439 79935469 -69581568 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1194 414 0 0 0 chr6 79935469 79935514 -69581523 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1194 1067 74 0 0 chr6 79935879 79936014 -69581023 + B1_Mus1 SINE Alu 2 136 -12 7 1194 333 0 0 0 chr6 79936017 79936054 -69580983 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1194 435 19 0 0 chr6 79937187 79937239 -69579798 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1194 848 320 53 46 chr6 79937274 79937710 -69579327 + RMER5 LTR ERV1 81 519 -15 7 1194 423 0 0 0 chr6 79938126 79938173 -69578864 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1194 371 337 99 9 chr6 79938209 79938400 -69578637 - B4A SINE B4 -44 248 39 7 1194 984 224 141 15 chr6 79938400 79938512 -69578525 - Lx6 LINE L1 -29 7667 7555 7 1194 933 91 30 0 chr6 79938512 79938711 -69578326 + (TATAG)n Simple_repeat Simple_repeat 1 205 0 7 1194 1017 263 116 10 chr6 79938711 79939046 -69577991 - Lx6 LINE L1 -142 7554 6896 7 1194 235 315 0 64 chr6 79939059 79939137 -69577900 - B3 SINE B2 -137 79 7 7 1194 306 259 55 20 chr6 79939155 79939301 -69577736 - Lx6 LINE L1 0 7460 7310 7 1194 6304 90 1 24 chr6 79939299 79940188 -69576849 + L1Md_F2 LINE L1 5691 6559 -23 7 1194 189 0 0 0 chr6 79940188 79940209 -69576828 + (TAA)n Simple_repeat Simple_repeat 1 21 0 7 1194 540 275 126 6 chr6 79940211 79940394 -69576643 - Lx6 LINE L1 -137 7323 7119 7 1194 533 243 114 60 chr6 79940862 79941046 -69575991 + B3A SINE B2 1 194 -4 7 1194 260 333 73 32 chr6 79941379 79941400 -69575637 + ID_B1 SINE B4 80 208 -16 7 1194 306 320 58 0 chr6 79941400 79941503 -69575534 + B1F SINE Alu 25 133 -16 7 1194 517 337 124 50 chr6 79941636 79941742 -69575295 + B4A SINE B4 1 102 -190 7 1194 3009 84 2 2 chr6 79941742 79942149 -69574888 + MTB_Mm LTR MaLR 1 407 0 7 1194 517 337 124 50 chr6 79942149 79942301 -69574736 + B4A SINE B4 103 278 -14 7 1194 1268 198 25 0 chr6 79942400 79942638 -69574399 - RLTR14 LTR ERV1 -136 246 3 7 1194 266 317 49 0 chr6 79942696 79942778 -69574259 + MER20 DNA MER1_type 134 219 0 7 1194 487 274 0 25 chr6 79943144 79943264 -69573773 + RSINE1 SINE B4 18 134 -31 7 1194 363 192 10 10 chr6 79943902 79944002 -69573035 + Lx7 LINE L1 7515 7614 -82 7 1194 621 227 91 0 chr6 79944042 79944196 -69572841 - Lx7 LINE L1 -8 7688 7521 7 1194 210 71 0 0 chr6 79944820 79944848 -69572189 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1194 317 252 187 86 chr6 79945097 79945236 -69571801 - RSINE1 SINE B4 0 165 13 7 1194 554 301 35 97 chr6 79946397 79946564 -69570473 + B3A SINE B2 1 169 -47 7 1194 462 36 0 0 chr6 79946564 79946620 -69570417 + (TCTCCC)n Simple_repeat Simple_repeat 3 58 0 7 1194 180 0 0 0 chr6 79946621 79946641 -69570396 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1194 479 301 35 97 chr6 79946641 79946699 -69570338 + B3 SINE B2 170 214 -2 7 1194 426 306 75 6 chr6 79947211 79947385 -69569652 + B3A SINE B2 4 189 -9 7 1194 582 277 21 0 chr6 79947567 79947708 -69569329 - RSINE1 SINE B4 -19 146 3 7 1194 314 0 49 0 chr6 79947719 79947760 -69569277 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 7 1194 1116 95 0 0 chr6 79947774 79947921 -69569116 - B1_Mus1 SINE Alu -1 147 1 7 1194 576 29 0 0 chr6 79948492 79948562 -69568475 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 1194 486 0 0 0 chr6 79948562 79948615 -69568422 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1194 875 275 10 16 chr6 79948632 79948824 -69568213 - B3 SINE B2 -23 193 3 7 1194 669 285 67 39 chr6 79948985 79949193 -69567844 + B3A SINE B2 1 214 -2 7 1194 458 57 0 14 chr6 79949321 79949392 -69567645 + (TA)n Simple_repeat Simple_repeat 1 70 0 7 1194 987 131 56 11 chr6 79949407 79949585 -69567452 + B2_Mm2 SINE B2 1 186 -9 7 1194 501 17 0 0 chr6 79949756 79949814 -69567223 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1194 504 356 42 18 chr6 79949849 79950184 -69566853 - Lx7 LINE L1 -376 7320 6978 7 1194 883 248 155 41 chr6 79950597 79950959 -69566078 + Lx6 LINE L1 7048 7450 -10 7 1194 512 140 43 11 chr6 79950993 79951087 -69565950 - MTC LTR MaLR 0 421 325 7 1194 381 150 0 0 chr6 79951415 79951475 -69565562 - MTD LTR MaLR 0 419 360 7 1194 2230 117 84 0 chr6 79951476 79951819 -69565218 - L1Md_F LINE L1 -5703 816 445 7 1194 3144 79 84 21 chr6 79951820 79952225 -69564812 + L1Md_F2 LINE L1 6087 6481 -101 7 1194 204 40 0 0 chr6 79952225 79952250 -69564787 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 7 1194 3144 79 84 21 chr6 79952250 79952309 -69564728 + L1Md_F2 LINE L1 6482 6578 -4 7 1194 925 251 288 62 chr6 79952315 79952620 -69564417 - MTD LTR MaLR -45 374 1 7 1194 502 331 110 29 chr6 79952746 79953054 -69563983 - ORR1E LTR MaLR -7 352 20 7 1194 957 311 31 75 chr6 79953480 79953904 -69563133 - MTD LTR MaLR -14 405 1 7 1195 200 288 29 63 chr6 79954717 79954891 -69562146 + T-rich Low_complexity Low_complexity 2 169 0 7 1195 4889 141 10 0 chr6 79955535 79956306 -69560731 + Lx2 LINE L1 6219 6997 0 7 1195 22 0 0 0 chr6 79956336 79956358 -69560679 + AT_rich Low_complexity Low_complexity 1 22 0 7 1195 369 0 0 0 chr6 79956358 79956399 -69560638 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1195 203 0 37 0 chr6 79956829 79956856 -69560181 + (CACCC)n Simple_repeat Simple_repeat 3 30 0 7 1195 405 0 0 0 chr6 79957187 79957232 -69559805 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1195 471 294 60 38 chr6 79958243 79958427 -69558610 - B4 SINE B4 -8 284 97 7 1195 611 279 66 38 chr6 79958494 79958781 -69558256 - MER63D DNA AcHobo -471 590 296 7 1195 245 298 0 0 chr6 79958892 79958949 -69558088 - Charlie12 DNA MER1_type -9 2864 2808 7 1195 38262 9 1 2 chr6 79959236 79964828 -69552209 + L1Md_A LINE L1 7 5586 -297 7 1195 8980 5 0 0 chr6 79964828 79965824 -69551213 + L1Md_A LINE L1 5587 6582 0 7 1195 38262 7 1 3 chr6 79965824 79965845 -69551192 + L1Md_A LINE L1 5587 5610 -273 7 1195 219 88 0 0 chr6 79966259 79966293 -69550744 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1195 776 261 40 5 chr6 79967818 79968018 -69549019 + B3 SINE B2 1 207 -9 7 1195 228 317 53 60 chr6 79969138 79969289 -69547748 + RMER17A2 LTR ERVK 238 387 -519 7 1195 297 0 0 0 chr6 79969889 79969922 -69547115 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1195 186 103 0 0 chr6 79970373 79970402 -69546635 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 7 1195 350 67 26 26 chr6 79973408 79973485 -69543552 + (TTTG)n Simple_repeat Simple_repeat 2 78 0 7 1195 203 193 0 17 chr6 79973512 79973570 -69543467 + T-rich Low_complexity Low_complexity 3 59 0 7 1195 21 0 0 0 chr6 79977528 79977549 -69539488 + AT_rich Low_complexity Low_complexity 1 21 0 7 1195 194 0 39 0 chr6 79977733 79977759 -69539278 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 7 1195 473 0 18 0 chr6 79978981 79979038 -69537999 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 7 1195 567 312 0 14 chr6 79979064 79979207 -69537830 - RSINE1 SINE B4 -22 143 3 7 1195 3158 81 23 0 chr6 79979470 79979900 -69537137 + L1_Mus2 LINE L1 6127 6566 0 7 1195 22 0 0 0 chr6 79980312 79980334 -69536703 + AT_rich Low_complexity Low_complexity 1 22 0 7 1195 23 33 0 0 chr6 79980781 79980811 -69536226 + AT_rich Low_complexity Low_complexity 1 30 0 7 1195 684 200 28 83 chr6 79980811 79981029 -69536008 - Lx4A LINE L1 0 7058 6853 7 1195 189 336 14 135 chr6 79981458 79981599 -69535438 + MIR SINE MIR 59 182 -80 7 1195 660 71 0 0 chr6 79982700 79982799 -69534238 + (GA)n Simple_repeat Simple_repeat 2 100 0 7 1195 477 282 148 11 chr6 79982828 79983011 -69534026 + ID_B1 SINE B4 2 209 -15 7 1195 1091 98 0 6 chr6 79983012 79983176 -69533861 + (GGAA)n Simple_repeat Simple_repeat 4 166 0 7 1195 253 349 33 7 chr6 79983243 79983393 -69533644 - ERVL-B4-int LTR ERVL -3728 1986 1833 7 1195 240 143 0 0 chr6 79983753 79983795 -69533242 + (TTA)n Simple_repeat Simple_repeat 1 42 0 8 1195 2126 175 81 27 chr6 79983795 79984242 -69532795 - Lx4A LINE L1 -3 7055 6585 8 1195 21 0 0 0 chr6 79984861 79984882 -69532155 + AT_rich Low_complexity Low_complexity 1 21 0 8 1195 28 61 0 0 chr6 79985081 79985130 -69531907 + AT_rich Low_complexity Low_complexity 1 49 0 8 1195 261 250 0 89 chr6 79985221 79985300 -69531737 + PB1D9 SINE Alu 1 72 -48 8 1195 226 0 0 56 chr6 79986056 79986092 -69530945 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1195 223 245 0 19 chr6 79986501 79986555 -69530482 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1195 24 0 0 0 chr6 79986987 79987011 -69530026 + AT_rich Low_complexity Low_complexity 1 24 0 8 1195 531 102 0 0 chr6 79987531 79987619 -69529418 + (TG)n Simple_repeat Simple_repeat 2 89 0 8 1195 642 266 7 41 chr6 79987620 79987765 -69529272 - RSINE1 SINE B4 -24 141 2 8 1195 414 0 0 0 chr6 79990242 79990288 -69526749 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1195 27 62 0 0 chr6 79990855 79990903 -69526134 + AT_rich Low_complexity Low_complexity 1 48 0 8 1195 29 28 0 0 chr6 79990934 79990970 -69526067 + AT_rich Low_complexity Low_complexity 1 36 0 8 1195 249 209 0 0 chr6 79991123 79991190 -69525847 + (TA)n Simple_repeat Simple_repeat 2 68 0 8 1195 4208 40 0 0 chr6 79991626 79992130 -69524907 + L1Md_A LINE L1 6079 6582 0 8 1195 1060 124 0 11 chr6 79992184 79992364 -69524673 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 8 1195 339 179 0 0 chr6 79992364 79992431 -69524606 + T-rich Low_complexity Low_complexity 1 67 0 8 1195 895 79 119 0 chr6 79992443 79992569 -69524468 - B1_Mus1 SINE Alu -6 142 2 8 1195 230 217 0 28 chr6 79992858 79992929 -69524108 + T-rich Low_complexity Low_complexity 6 74 0 8 1195 864 169 44 22 chr6 79994389 79994570 -69522467 - Lx2 LINE L1 0 6997 6813 8 1195 426 145 0 0 chr6 79994644 79994720 -69522317 - RMER1A Other Other 0 1030 955 8 1195 341 258 52 82 chr6 79994720 79994818 -69522219 + B3A SINE B2 66 161 -37 8 1195 246 32 0 0 chr6 79994818 79994849 -69522188 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1195 341 258 52 82 chr6 79994849 79994885 -69522152 + B3A SINE B2 162 196 -2 8 1195 351 254 34 28 chr6 79996009 79996218 -69520819 + (TA)n Simple_repeat Simple_repeat 1 210 0 8 1195 234 284 93 47 chr6 79996664 79996900 -69520137 + L1M4 LINE L1 3345 3591 -2555 8 1195 386 308 113 45 chr6 79997096 79997858 -69519179 + L1M4 LINE L1 3889 4702 -1444 8 1195 237 83 0 0 chr6 79998833 79998869 -69518168 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 8 1195 3000 185 47 18 chr6 79999379 80000000 -69517037 - RMER6C LTR ERVK 0 690 52 8 1195 389 354 10 44 chr6 80000564 80000768 -69516269 + B3A SINE B2 2 198 0 1 1195 822 170 16 95 chr6 80000939 80001151 -69515886 - ORR1A4 LTR MaLR -133 213 1 2 1195 351 348 21 21 chr6 80002693 80002834 -69514203 - B1F1 SINE Alu -7 142 2 3 1195 975 263 148 36 chr6 80003192 80004024 -69513013 - L1M2 LINE L1 -850 5494 4558 4 1195 498 61 0 0 chr6 80004202 80004268 -69512769 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1195 420 314 0 0 chr6 80004276 80004378 -69512659 - B3A SINE B2 -95 103 2 6 1195 1090 295 109 35 chr6 80004484 80004582 -69512455 - L1M2 LINE L1 -2061 4082 3993 4 1195 428 313 138 12 chr6 80004582 80004828 -69512209 + B4A SINE B4 2 278 -14 7 1195 1090 295 109 35 chr6 80004828 80005257 -69511780 - L1M2 LINE L1 -2151 3992 3505 4 1195 1208 79 6 0 chr6 80005257 80005435 -69511602 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 8 1195 1090 295 109 35 chr6 80005435 80005906 -69511131 - L1M2 LINE L1 -2639 3504 3009 4 1195 25 0 0 0 chr6 80005914 80005939 -69511098 + AT_rich Low_complexity Low_complexity 1 25 0 9 1195 279 301 80 27 chr6 80006279 80006467 -69510570 - L1M2 LINE L1 -3809 2334 2137 4 1195 624 324 6 0 chr6 80006518 80006697 -69510340 - B3A SINE B2 -18 180 1 1 1195 186 231 0 0 chr6 80006817 80006882 -69510155 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1195 279 0 0 0 chr6 80007561 80007592 -69509445 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1195 258 362 105 0 chr6 80007633 80007834 -69509203 - Lx8 LINE L1 -184 7460 7110 1 1195 617 283 35 54 chr6 80007849 80008107 -69508930 + Lx9 LINE L1 6963 7215 -429 1 1195 423 183 0 0 chr6 80009420 80009502 -69507535 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 1195 207 0 0 0 chr6 80009504 80009527 -69507510 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1195 342 346 23 23 chr6 80009544 80009677 -69507360 + ID_B1 SINE B4 92 224 0 1 1195 719 321 82 8 chr6 80009800 80009986 -69507051 + B4 SINE B4 20 222 -70 1 1195 192 40 0 0 chr6 80009986 80010011 -69507026 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1195 719 321 82 8 chr6 80010011 80010069 -69506968 + B4 SINE B4 223 281 -11 1 1195 267 31 0 0 chr6 80010172 80010204 -69506833 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1195 241 202 131 0 chr6 80010204 80010372 -69506665 - RMER17D2 LTR ERVK -385 424 235 2 1195 1241 137 5 19 chr6 80010429 80010638 -69506399 + Lx2 LINE L1 6775 6980 -17 2 1195 339 330 32 69 chr6 80010642 80010831 -69506206 + ORR1E LTR MaLR 73 254 -105 2 1195 4751 140 61 31 chr6 80010854 80011729 -69505308 + RMER17B LTR ERVK 1 901 -57 2 1195 285 362 11 0 chr6 80012149 80012243 -69504794 - B4A SINE B4 -192 100 6 2 1195 288 70 0 0 chr6 80012505 80012548 -69504489 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1195 180 0 0 0 chr6 80012733 80012753 -69504284 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1195 594 276 51 62 chr6 80012867 80012966 -69504071 - Lx9 LINE L1 -51 7593 7495 2 1195 246 105 0 0 chr6 80012966 80013004 -69504033 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1195 594 274 133 46 chr6 80013004 80013395 -69503642 - Lx9 LINE L1 -150 7494 7070 2 1195 271 273 20 10 chr6 80013392 80013492 -69503545 + Lx9 LINE L1 6898 6998 -646 2 1195 650 303 7 0 chr6 80013715 80013870 -69503167 + B3A SINE B2 1 156 -42 3 1195 297 0 0 0 chr6 80013883 80013916 -69503121 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1195 234 0 0 0 chr6 80013918 80013944 -69503093 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1195 21 57 0 0 chr6 80014653 80014688 -69502349 + AT_rich Low_complexity Low_complexity 1 35 0 3 1195 269 26 0 26 chr6 80014792 80014831 -69502206 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 3 1195 900 62 130 15 chr6 80014832 80014963 -69502074 - B1_Mus2 SINE Alu -1 146 1 3 1195 468 111 0 0 chr6 80015062 80015134 -69501903 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1195 26 64 0 0 chr6 80015727 80015774 -69501263 + AT_rich Low_complexity Low_complexity 1 47 0 3 1195 373 276 142 0 chr6 80015857 80015984 -69501053 - Lx9 LINE L1 -157 7487 7343 3 1195 550 227 61 0 chr6 80016901 80017033 -69500004 + URR1B DNA MER1_type 85 224 -1 3 1195 561 353 95 40 chr6 80017050 80017354 -69499683 + MTE2a LTR MaLR 59 379 0 4 1195 261 0 0 0 chr6 80018008 80018037 -69499000 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1195 707 301 29 29 chr6 80018808 80019017 -69498020 + B3A SINE B2 8 216 0 4 1195 519 17 0 0 chr6 80019026 80019086 -69497951 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1195 526 374 62 16 chr6 80019804 80020062 -69496975 + B4 SINE B4 5 274 -18 4 1195 23 33 0 0 chr6 80020124 80020154 -69496883 + AT_rich Low_complexity Low_complexity 1 30 0 4 1195 193 119 0 45 chr6 80020778 80020822 -69496215 + T-rich Low_complexity Low_complexity 3 44 0 4 1195 2526 184 18 18 chr6 80020823 80021311 -69495726 - Lx4A LINE L1 -1 7057 6570 4 1195 3398 124 11 16 chr6 80021316 80022021 -69495016 + Lx4B LINE L1 5303 6000 -1058 4 1195 616 191 36 7 chr6 80023563 80023700 -69493337 + B1_Mus1 SINE Alu 7 147 -1 4 1195 313 308 77 77 chr6 80024112 80024295 -69492742 - B3 SINE B2 0 216 34 5 1195 1057 195 54 0 chr6 80024360 80024581 -69492456 - Lx5 LINE L1 -8 7042 6810 5 1195 2556 196 17 24 chr6 80024581 80025124 -69491913 - Lx5 LINE L1 -680 6370 5827 5 1195 498 33 0 0 chr6 80025268 80025328 -69491709 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 5 1195 447 303 80 46 chr6 80025580 80025843 -69491194 - B4A SINE B4 -17 275 4 5 1195 640 325 93 26 chr6 80025929 80026242 -69490795 + MER82 DNA MER2_type 1 334 -319 5 1195 235 349 68 49 chr6 80026265 80026470 -69490567 + MER82 DNA MER2_type 410 618 -35 5 1195 190 364 113 11 chr6 80027012 80027198 -69489839 - L2 LINE L2 -751 2668 2464 5 1195 22 0 0 0 chr6 80027201 80027223 -69489814 + AT_rich Low_complexity Low_complexity 1 22 0 5 1195 223 317 64 82 chr6 80027587 80027697 -69489340 + PB1D10 SINE Alu 1 108 -9 5 1195 461 309 70 56 chr6 80028554 80028767 -69488270 - B3 SINE B2 0 216 1 5 1195 378 364 73 20 chr6 80029605 80029852 -69487185 + B4A SINE B4 15 274 -18 5 1195 273 163 0 0 chr6 80029873 80029922 -69487115 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1195 492 258 48 8 chr6 80031654 80031779 -69485258 - ID_B1 SINE B4 -26 198 69 6 1195 752 317 14 29 chr6 80032236 80032444 -69484593 + B3 SINE B2 2 206 -10 6 1195 780 339 9 9 chr6 80032481 80032707 -69484330 + B4 SINE B4 4 229 -63 6 1195 503 226 0 9 chr6 80034044 80034151 -69482886 - Lx8 LINE L1 -358 7115 7010 6 1195 348 319 55 66 chr6 80034165 80034346 -69482691 - B4A SINE B4 -113 179 1 6 1195 218 268 47 35 chr6 80034943 80035028 -69482009 - MER5A DNA MER1_type -5 184 99 6 1195 627 267 158 32 chr6 80035158 80035437 -69481600 + MTD LTR MaLR 10 323 -96 6 1195 304 259 35 41 chr6 80035629 80035774 -69481263 + MER33 DNA MER1_type 68 211 -113 6 1195 7951 68 4 5 chr6 80036151 80037198 -69479839 - L1Md_F2 LINE L1 -334 5549 4504 6 1195 7342 70 8 16 chr6 80037217 80038208 -69478829 + L1Md_F2 LINE L1 5588 6570 -12 6 1195 21 0 0 0 chr6 80039508 80039529 -69477508 + AT_rich Low_complexity Low_complexity 1 21 0 7 1195 378 0 0 0 chr6 80040023 80040065 -69476972 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1195 722 345 20 0 chr6 80040084 80040333 -69476704 - B4A SINE B4 -38 254 1 7 1195 25 0 0 0 chr6 80040379 80040404 -69476633 + AT_rich Low_complexity Low_complexity 1 25 0 7 1195 552 296 29 34 chr6 80040651 80040857 -69476180 + B3 SINE B2 3 207 -9 7 1195 207 0 0 0 chr6 80041075 80041098 -69475939 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1195 2091 87 7 10 chr6 80041140 80041443 -69475594 + L1_Mus3 LINE L1 6334 6635 -3 7 1195 701 286 42 21 chr6 80042809 80043002 -69474035 - B3A SINE B2 -1 197 1 7 1195 456 35 0 0 chr6 80043439 80043497 -69473540 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1195 477 303 155 0 chr6 80043501 80043656 -69473381 - B3A SINE B2 -18 180 2 7 1195 820 263 73 23 chr6 80044372 80044590 -69472447 - B4 SINE B4 -16 276 48 8 1195 399 41 0 0 chr6 80045530 80045579 -69471458 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1195 493 390 4 38 chr6 80045630 80045867 -69471170 - B4 SINE B4 -42 250 22 8 1195 3896 53 4 0 chr6 80045972 80046460 -69470577 - L1_Mus1 LINE L1 -1 6566 6077 8 1195 301 0 22 43 chr6 80046527 80046573 -69470464 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 8 1195 1077 101 0 0 chr6 80046574 80046722 -69470315 - B1_Mus1 SINE Alu 0 148 1 8 1195 256 326 72 102 chr6 80046723 80047027 -69470010 - ORR1D2 LTR MaLR -58 312 18 8 1195 332 286 0 20 chr6 80048065 80048165 -69468872 + Lx9 LINE L1 7230 7327 -317 8 1195 432 0 0 0 chr6 80048246 80048294 -69468743 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1195 237 158 0 17 chr6 80048392 80048450 -69468587 + Lx9 LINE L1 7568 7624 -20 8 1195 198 0 0 0 chr6 80048457 80048479 -69468558 + (TA)n Simple_repeat Simple_repeat 2 23 0 9 1195 309 172 0 0 chr6 80048620 80048684 -69468353 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1195 4155 11 0 0 chr6 80049174 80049642 -69467395 - L1Md_T LINE L1 0 6582 6115 9 1195 280 278 56 4 chr6 80050535 80050630 -69466407 - PB1D7 SINE Alu -10 110 1 9 1195 230 246 0 0 chr6 80051486 80051547 -69465490 + GA-rich Low_complexity Low_complexity 2 62 0 9 1195 284 268 84 84 chr6 80052049 80052216 -69464821 + B2_Mm2 SINE B2 3 169 -26 9 1195 34 42 0 0 chr6 80052256 80052304 -69464733 + AT_rich Low_complexity Low_complexity 1 48 0 9 1195 34 89 0 0 chr6 80052338 80052428 -69464609 + AT_rich Low_complexity Low_complexity 1 90 0 9 1195 259 310 82 49 chr6 80052912 80053034 -69464003 + B3A SINE B2 91 216 0 9 1195 517 303 42 0 chr6 80054203 80054345 -69462692 + B1F1 SINE Alu 1 148 -1 9 1195 239 229 0 0 chr6 80054707 80054768 -69462269 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 1 1195 189 196 0 0 chr6 80054970 80055016 -69462021 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1195 454 319 89 5 chr6 80055883 80056097 -69460940 - Tigger9b DNA MER2_type -1 623 392 1 1195 1866 162 0 69 chr6 80056238 80056602 -69460435 - Lx2B LINE L1 -4 6996 6658 1 1195 552 341 19 9 chr6 80056864 80057074 -69459963 - B3 SINE B2 -4 212 1 1 1195 275 376 104 15 chr6 80057108 80057243 -69459794 + ID_B1 SINE B4 6 152 -72 1 1195 594 105 0 0 chr6 80057807 80057912 -69459125 + (GA)n Simple_repeat Simple_repeat 2 106 0 1 1195 315 208 221 0 chr6 80057914 80057991 -69459046 + B1_Mur4 SINE Alu 43 136 -14 1 1195 452 18 0 17 chr6 80057995 80058053 -69458984 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 1 1195 22 56 0 0 chr6 80058464 80058500 -69458537 + AT_rich Low_complexity Low_complexity 1 36 0 1 1195 818 190 55 22 chr6 80058671 80058854 -69458183 + B2_Mm2 SINE B2 1 189 -6 1 1195 574 49 24 0 chr6 80058923 80059005 -69458032 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1 1195 1327 68 10 5 chr6 80060544 80060737 -69456300 - L1_Mus2 LINE L1 0 6566 6373 1 1195 411 369 22 22 chr6 80061087 80061270 -69455767 - B3 SINE B2 -30 186 4 1 1195 853 274 45 0 chr6 80061688 80061889 -69455148 - ID_B1 SINE B4 -13 211 2 1 1195 453 110 0 0 chr6 80062787 80062869 -69454168 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1195 670 268 16 47 chr6 80062884 80063076 -69453961 - B3 SINE B2 -30 186 1 1 1195 209 128 21 0 chr6 80063643 80063690 -69453347 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1195 220 327 81 9 chr6 80064162 80064273 -69452764 + B1F SINE Alu 1 119 -30 1 1195 316 333 41 82 chr6 80065340 80065510 -69451527 + B4A SINE B4 3 165 -127 1 1195 309 276 0 0 chr6 80065614 80065770 -69451267 + (CA)n Simple_repeat Simple_repeat 1 156 0 1 1195 189 0 0 0 chr6 80065778 80065799 -69451238 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1195 333 0 0 0 chr6 80065802 80065839 -69451198 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1195 8272 26 1 0 chr6 80066240 80067677 -69449360 - L1Md_A LINE L1 -1 6581 5143 1 1195 470 343 49 25 chr6 80068278 80068481 -69448556 - B3 SINE B2 -8 208 1 1 1195 304 381 0 35 chr6 80069515 80069659 -69447378 - ID_B1 SINE B4 0 224 86 1 1195 202 233 33 16 chr6 80070521 80070582 -69446455 + MIRb SINE MIR 49 110 -158 1 1195 1201 333 43 22 chr6 80071740 80072201 -69444836 - Lx8 LINE L1 -684 6789 6319 1 1195 1452 311 56 16 chr6 80072203 80072251 -69444786 + Lx8 LINE L1 6808 6858 -615 1 1195 338 0 0 23 chr6 80072251 80072294 -69444743 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 1 1195 1452 311 56 16 chr6 80072294 80072857 -69444180 + Lx8 LINE L1 6859 7443 -30 1 1195 1057 84 6 24 chr6 80073619 80073789 -69443248 - L1Md_F2 LINE L1 -2 6580 6414 1 1195 4066 122 113 9 chr6 80074216 80074879 -69442158 + Lx2 LINE L1 6266 6997 0 1 1195 297 145 42 17 chr6 80074974 80075093 -69441944 + (TAGA)n Simple_repeat Simple_repeat 4 125 0 1 1195 432 363 141 41 chr6 80075153 80075544 -69441493 - MLT2B2 LTR ERVL -35 480 51 1 1195 308 337 92 40 chr6 80075633 80075675 -69441362 - B4A SINE B4 -27 265 122 1 1195 461 250 0 115 chr6 80075675 80075797 -69441240 - PB1D10 SINE Alu -2 115 8 1 1195 471 262 162 24 chr6 80075994 80076365 -69440672 - L1MA8 LINE L1 -213 6078 5657 1 1195 236 233 0 16 chr6 80076610 80076671 -69440366 - CR1_Mam LINE CR1 -687 1517 1458 1 1195 3434 220 36 17 chr6 80077669 80078438 -69438599 - Lx9 LINE L1 -403 7241 6458 1 1195 744 256 193 19 chr6 80078423 80078794 -69438243 + Lx9 LINE L1 7210 7644 0 1 1195 245 340 44 66 chr6 80079612 80079839 -69437198 - RMER12 LTR ERVK 0 1322 1101 1 1195 5947 72 7 9 chr6 80080083 80080901 -69436136 - RLTR22_Mus LTR ERVK -991 817 1 1 1195 269 263 78 13 chr6 80080927 80081004 -69436033 - RMER10A LTR ERVL -43 399 318 1 1195 248 311 17 78 chr6 80082657 80082772 -69434265 + ORR1D1 LTR MaLR 27 134 -240 1 1195 3645 128 81 48 chr6 80083863 80084571 -69432466 - L1_Mus4 LINE L1 -1 6635 5905 1 1196 22 80 0 0 chr6 80085009 80085059 -69431978 + AT_rich Low_complexity Low_complexity 1 50 0 1 1196 3855 260 55 38 chr6 80085371 80085519 -69431518 - Lx6 LINE L1 -179 7281 7122 1 1196 519 45 0 0 chr6 80085519 80085585 -69431452 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1196 3855 260 55 38 chr6 80085585 80086496 -69430541 - Lx6 LINE L1 -339 7121 6204 1 1196 7581 201 43 52 chr6 80086506 80087567 -69429470 - L1_Mur3 LINE L1 -4 5876 4856 1 1196 3650 46 17 13 chr6 80087567 80088032 -69429005 - L1Md_F3 LINE L1 -1 6583 6117 1 1196 195 69 0 0 chr6 80088037 80088066 -69428971 + (CTA)n Simple_repeat Simple_repeat 1 29 0 1 1196 7581 201 43 52 chr6 80088066 80088944 -69428093 - L1_Mur3 LINE L1 -1025 4855 3948 1 1196 24 67 0 0 chr6 80089132 80089177 -69427860 + AT_rich Low_complexity Low_complexity 1 45 0 1 1196 654 49 0 0 chr6 80089242 80089324 -69427713 + (TATG)n Simple_repeat Simple_repeat 2 83 0 1 1196 337 219 24 73 chr6 80089330 80089453 -69427584 - Lx4B LINE L1 -18 7040 6924 1 1196 2596 206 21 53 chr6 80089454 80090170 -69426867 - L1_Mur3 LINE L1 -1924 3956 3264 1 1196 504 0 0 0 chr6 80090325 80090381 -69426656 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1196 215 114 0 22 chr6 80090533 80090571 -69426466 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1196 994 80 80 0 chr6 80090571 80090708 -69426329 - B1_Mus1 SINE Alu 0 148 1 1 1196 215 114 0 22 chr6 80090708 80090714 -69426323 + (TTTTG)n Simple_repeat Simple_repeat 2 7 0 1 1196 1294 77 5 5 chr6 80090787 80090971 -69426066 - L1_Mus1 LINE L1 0 6567 6384 1 1196 1585 140 0 0 chr6 80090971 80091214 -69425823 + L1_Mus1 LINE L1 5948 6190 -377 1 1196 751 107 131 0 chr6 80091404 80091526 -69425511 + B1_Mus1 SINE Alu 2 139 -9 1 1196 417 320 49 0 chr6 80092055 80092177 -69424860 + RSINE1 SINE B4 4 131 -34 1 1196 198 171 0 0 chr6 80092218 80092259 -69424778 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1196 459 0 0 0 chr6 80092264 80092315 -69424722 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1196 360 268 90 13 chr6 80092909 80093064 -69423973 + L1M2 LINE L1 5651 5817 -483 1 1196 986 146 72 39 chr6 80093212 80093296 -69423741 + Lx2 LINE L1 6784 6867 -130 1 1196 186 43 0 0 chr6 80093296 80093319 -69423718 + (TGGG)n Simple_repeat Simple_repeat 2 24 0 1 1196 986 146 72 39 chr6 80093319 80093441 -69423596 + Lx2 LINE L1 6868 6997 0 1 1196 476 302 74 37 chr6 80093497 80093686 -69423351 - B3A SINE B2 -1 197 2 1 1196 189 0 0 0 chr6 80093701 80093722 -69423315 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1196 824 28 19 0 chr6 80093722 80093829 -69423208 - B1_Mm SINE Alu 0 147 39 1 1196 299 176 77 51 chr6 80093763 80093841 -69423196 - RLTR25B LTR ERVK -519 509 430 1 1196 467 205 59 166 chr6 80094899 80095086 -69421951 + RMER16 LTR ERVK 262 428 -105 1 1196 221 0 35 0 chr6 80095087 80095116 -69421921 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1196 437 343 149 12 chr6 80095281 80095529 -69421508 + B4A SINE B4 7 288 -4 1 1196 27 29 0 0 chr6 80096072 80096106 -69420931 + AT_rich Low_complexity Low_complexity 1 34 0 1 1196 560 149 7 34 chr6 80096203 80096210 -69420827 + (CA)n Simple_repeat Simple_repeat 1 7 0 1 1196 329 342 0 77 chr6 80096210 80096406 -69420631 + B3A SINE B2 2 182 -16 1 1196 560 149 7 34 chr6 80096406 80096544 -69420493 + (CA)n Simple_repeat Simple_repeat 2 135 0 1 1196 351 0 0 0 chr6 80096653 80096692 -69420345 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1196 353 329 177 25 chr6 80097496 80097733 -69419304 - RMER15 LTR ERVL -15 560 288 1 1196 414 0 0 0 chr6 80097901 80097947 -69419090 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1196 405 0 0 0 chr6 80097947 80097991 -69419046 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1196 23 33 0 0 chr6 80098456 80098486 -69418551 + AT_rich Low_complexity Low_complexity 1 30 0 1 1196 204 241 33 33 chr6 80098576 80098636 -69418401 + GA-rich Low_complexity Low_complexity 1 60 0 1 1196 369 333 42 55 chr6 80099561 80099726 -69417311 + RSINE1 SINE B4 3 165 0 1 1196 537 99 0 0 chr6 80099727 80099808 -69417229 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1196 1094 295 53 18 chr6 80099988 80100326 -69416711 + MTEa LTR MaLR 1 350 -29 1 1196 24 32 0 0 chr6 80100544 80100575 -69416462 + AT_rich Low_complexity Low_complexity 1 31 0 1 1196 317 341 30 37 chr6 80100575 80100709 -69416328 - B3 SINE B2 -34 182 50 1 1196 323 263 156 10 chr6 80101608 80101704 -69415333 - B3A SINE B2 -56 142 33 1 1196 674 67 19 0 chr6 80101718 80101823 -69415214 - L1_Mus1 LINE L1 -1 6566 6460 1 1196 474 81 0 0 chr6 80101823 80101885 -69415152 + L1_Mus1 LINE L1 6098 6159 -408 1 1196 4266 49 0 0 chr6 80101882 80102410 -69414627 - L1_Mm LINE L1 -356 5527 5000 1 1196 3688 48 0 4 chr6 80102410 80102867 -69414170 + L1Md_F3 LINE L1 6128 6582 -2 1 1196 382 115 0 0 chr6 80102867 80102919 -69414118 + L1_Mus1 LINE L1 6146 6197 -370 1 1196 252 281 0 0 chr6 80102981 80103038 -69413999 + CT-rich Low_complexity Low_complexity 2 58 0 1 1196 290 211 78 0 chr6 80104162 80104290 -69412747 + (TAGA)n Simple_repeat Simple_repeat 2 139 0 1 1196 432 192 65 18 chr6 80104315 80104485 -69412552 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1 1196 222 37 0 0 chr6 80104545 80104572 -69412465 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1196 543 349 55 17 chr6 80104907 80105199 -69411838 - MER2 DNA MER2_type -35 310 8 1 1196 333 0 0 0 chr6 80105211 80105248 -69411789 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1 1196 846 62 15 8 chr6 80105520 80105650 -69411387 - L1Md_F3 LINE L1 -3 6581 6451 1 1196 233 128 0 21 chr6 80105726 80105774 -69411263 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1196 605 118 16 16 chr6 80105894 80106015 -69411022 + (TA)n Simple_repeat Simple_repeat 1 121 0 1 1196 326 289 90 45 chr6 80106169 80106303 -69410734 - L2c LINE L2 -17 3370 3231 2 1196 465 250 83 0 chr6 80106692 80106824 -69410213 + L1MA6 LINE L1 6141 6283 -17 2 1196 1245 319 106 6 chr6 80106940 80107429 -69409608 + Lx8 LINE L1 6792 7329 -144 2 1196 6809 60 2 3 chr6 80107458 80108318 -69408719 - L1Md_F2 LINE L1 -10 6572 5714 2 1196 423 0 0 0 chr6 80108318 80108365 -69408672 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1196 318 291 53 35 chr6 80108909 80109118 -69407919 - L1MB1 LINE L1 -363 5949 5724 2 1196 646 317 23 37 chr6 80109707 80109923 -69407114 + B4 SINE B4 58 270 -22 2 1196 474 49 0 0 chr6 80109941 80110002 -69407035 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1196 967 285 63 0 chr6 80111226 80111510 -69405527 + Lx8 LINE L1 6915 7216 -257 2 1196 762 22 0 0 chr6 80114072 80114164 -69402873 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1196 230 274 84 0 chr6 80115225 80115320 -69401717 - MER58B DNA MER1_type -153 188 86 2 1196 203 349 82 24 chr6 80115387 80115557 -69401480 - L2 LINE L2 -349 3070 2891 2 1196 402 21 0 0 chr6 80115727 80115774 -69401263 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1196 1569 147 14 32 chr6 80116376 80116658 -69400379 + Lx3B LINE L1 6697 6973 0 2 1196 1093 72 0 0 chr6 80116764 80116902 -69400135 + B1_Mm SINE Alu 2 139 -8 2 1196 393 22 0 0 chr6 80116916 80116962 -69400075 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1196 241 164 0 69 chr6 80117107 80117179 -69399858 + T-rich Low_complexity Low_complexity 5 71 0 2 1196 1021 281 45 108 chr6 80117551 80118129 -69398908 - MT2B LTR ERVL 0 601 1 2 1196 252 86 0 0 chr6 80119051 80119086 -69397951 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1196 194 264 57 0 chr6 80119581 80119634 -69397403 + L2b LINE L2 3318 3373 -2 2 1196 4468 50 2 0 chr6 80120173 80120717 -69396320 - L1_Mus1 LINE L1 -177 6390 5846 2 1196 1353 47 0 0 chr6 80120717 80120887 -69396150 + L1_Mus1 LINE L1 6398 6567 0 2 1196 280 291 92 11 chr6 80120913 80121000 -69396037 + RSINE1 SINE B4 2 95 -70 2 1196 561 371 39 0 chr6 80121771 80122000 -69395037 - B4A SINE B4 0 292 55 2 1196 4076 109 42 2 chr6 80122292 80122890 -69394147 - Lx LINE L1 -2 6652 6031 2 1196 1467 215 34 17 chr6 80123501 80123721 -69393316 - RLTR12A LTR ERVK 0 568 346 2 1196 2044 109 51 0 chr6 80123721 80124032 -69393005 + ORR1A2 LTR MaLR 1 327 0 2 1196 1467 215 34 17 chr6 80124032 80124166 -69392871 - RLTR12A LTR ERVK -223 345 208 2 1196 778 193 11 0 chr6 80124170 80124346 -69392691 + CT-rich Low_complexity Low_complexity 2 179 0 2 1196 853 249 71 21 chr6 80124361 80124599 -69392438 - RLTR12A LTR ERVK -245 323 74 2 1196 658 201 67 0 chr6 80124576 80124710 -69392327 - RLTR12A LTR ERVK -425 143 1 2 1196 712 371 9 0 chr6 80124727 80124956 -69392081 - B4A SINE B4 -50 242 12 2 1196 273 140 0 0 chr6 80125521 80125578 -69391459 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 2 1196 513 47 0 0 chr6 80126099 80126163 -69390874 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1196 298 297 70 108 chr6 80126669 80126854 -69390183 - L2c LINE L2 -2 3385 3208 2 1196 924 362 50 20 chr6 80128037 80128575 -69388462 - Lx8 LINE L1 -1 7472 6919 2 1196 1833 58 0 0 chr6 80128664 80128888 -69388149 + L1Md_F2 LINE L1 5362 5585 -298 2 1196 7775 58 3 5 chr6 80128889 80129877 -69387160 + L1Md_F2 LINE L1 5587 6572 -10 2 1196 336 322 26 0 chr6 80130087 80130239 -69386798 - MER53 DNA hAT -11 182 27 2 1196 250 332 45 41 chr6 80130379 80130599 -69386438 + L1MA6 LINE L1 5955 6175 -125 2 1196 227 0 22 65 chr6 80131401 80131447 -69385590 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 2 1196 252 86 0 0 chr6 80131442 80131477 -69385560 + (GTTTG)n Simple_repeat Simple_repeat 1 35 0 2 1196 532 346 12 6 chr6 80131504 80131667 -69385370 + B3A SINE B2 1 164 -34 2 1196 261 0 0 0 chr6 80131682 80131711 -69385326 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1196 459 0 0 0 chr6 80131711 80131761 -69385276 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1196 559 262 125 25 chr6 80131848 80132175 -69384862 - L1MA8 LINE L1 -261 6030 5662 2 1196 449 332 36 14 chr6 80132358 80132578 -69384459 - Lx9 LINE L1 -165 7479 7255 2 1196 1289 298 72 65 chr6 80132705 80133641 -69383396 - Zaphod DNA Tip100 -2680 1351 410 2 1196 1242 100 0 0 chr6 80134074 80134254 -69382783 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 2 1196 222 125 53 18 chr6 80134284 80134341 -69382696 + GA-rich Low_complexity Low_complexity 4 62 0 2 1196 313 293 36 12 chr6 80134662 80134745 -69382292 + RSINE1 SINE B4 43 127 -38 2 1196 272 30 0 0 chr6 80135460 80135493 -69381544 - U2 snRNA snRNA -155 33 1 2 1196 236 71 48 0 chr6 80136665 80136707 -69380330 + (CAGAGA)n Simple_repeat Simple_repeat 2 45 0 2 1196 470 302 59 59 chr6 80137913 80138251 -69378786 - L1MA5A LINE L1 -272 6025 5688 2 1196 23 0 0 0 chr6 80140297 80140320 -69376717 + AT_rich Low_complexity Low_complexity 1 23 0 2 1196 499 308 57 70 chr6 80140654 80140881 -69376156 + B4A SINE B4 51 274 -18 2 1196 193 228 28 35 chr6 80141159 80141300 -69375737 + (CATATA)n Simple_repeat Simple_repeat 1 140 0 2 1196 23 0 0 0 chr6 80141482 80141505 -69375532 + AT_rich Low_complexity Low_complexity 1 23 0 2 1196 207 239 0 0 chr6 80141505 80141572 -69375465 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1196 23 0 0 0 chr6 80141804 80141827 -69375210 + AT_rich Low_complexity Low_complexity 1 23 0 2 1196 514 218 33 85 chr6 80142058 80142269 -69374768 - Lx9 LINE L1 -7 7637 7438 2 1196 484 294 7 33 chr6 80142330 80142481 -69374556 - B3 SINE B2 -30 186 40 2 1196 203 88 0 29 chr6 80142487 80142522 -69374515 + (TATTG)n Simple_repeat Simple_repeat 5 38 0 2 1196 288 0 0 0 chr6 80142522 80142554 -69374483 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1196 1083 187 215 25 chr6 80142554 80142828 -69374209 - Lx4A LINE L1 0 7058 6733 2 1196 282 319 0 0 chr6 80143050 80143163 -69373874 + Lx9 LINE L1 7532 7644 0 2 1196 324 318 78 70 chr6 80143585 80143815 -69373222 + L1MC3 LINE L1 6741 6972 -910 2 1196 570 103 0 0 chr6 80143949 80144036 -69373001 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 1196 651 316 58 19 chr6 80144099 80144463 -69372574 + L1MC3 LINE L1 7130 7507 -278 2 1196 214 246 33 0 chr6 80144955 80145016 -69372021 + GA-rich Low_complexity Low_complexity 1 63 0 2 1196 469 333 13 25 chr6 80145898 80146055 -69370982 - RSINE1 SINE B4 -1 164 10 2 1196 1200 114 0 11 chr6 80146346 80146524 -69370513 + B2_Mm2 SINE B2 2 177 -18 2 1196 762 252 15 19 chr6 80146547 80146753 -69370284 + B3 SINE B2 1 205 -11 2 1196 3472 211 23 20 chr6 80147195 80147943 -69369094 - Lx2B LINE L1 -10 6990 6241 2 1196 535 301 23 6 chr6 80147947 80148124 -69368913 - B3A SINE B2 -17 181 2 2 1196 560 106 11 0 chr6 80149001 80149095 -69367942 + (TG)n Simple_repeat Simple_repeat 1 95 0 2 1196 1002 271 11 28 chr6 80149149 80149434 -69367603 - B4A SINE B4 -12 280 1 2 1196 457 282 88 8 chr6 80149463 80149588 -69367449 + RSINE1 SINE B4 11 145 -20 2 1196 1892 227 109 6 chr6 80149847 80150326 -69366711 + RLTR11A LTR ERVK 1 528 0 2 1196 258 300 102 36 chr6 80150438 80150604 -69366433 + LTR40a LTR ERVL 319 495 -24 2 1196 225 333 25 58 chr6 80151149 80151270 -69365767 - LTRIS_Mm LTR ERV1 -109 373 257 2 1196 4171 88 29 3 chr6 80151535 80152130 -69364907 - L1Md_F2 LINE L1 -3 6579 5970 2 1196 16795 116 19 6 chr6 80152130 80155809 -69361228 - L1Md_F LINE L1 -1694 4183 357 2 1196 614 291 24 32 chr6 80155846 80156053 -69360984 - B3A SINE B2 -13 203 7 2 1196 432 0 0 0 chr6 80157521 80157569 -69359468 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1196 528 298 8 0 chr6 80157723 80157844 -69359193 - B3A SINE B2 -76 122 1 2 1196 24 67 0 0 chr6 80157973 80158018 -69359019 + AT_rich Low_complexity Low_complexity 1 45 0 2 1196 1268 239 50 35 chr6 80158774 80159116 -69357921 - Lx6 LINE L1 -98 7362 7016 2 1196 1130 75 7 0 chr6 80161095 80161242 -69355795 - B1_Mus1 SINE Alu 0 148 1 2 1196 456 280 121 5 chr6 80161280 80161495 -69355542 - Lx9 LINE L1 -13 7631 7392 2 1196 363 341 20 88 chr6 80162987 80163135 -69353902 + B4 SINE B4 12 149 -143 2 1196 369 95 0 0 chr6 80164590 80164653 -69352384 + (A)n Simple_repeat Simple_repeat 1 63 0 2 1196 863 265 0 22 chr6 80164692 80164877 -69352160 + B3A SINE B2 2 182 -16 2 1196 1077 123 0 0 chr6 80164896 80165075 -69351962 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1196 22 0 0 0 chr6 80165144 80165166 -69351871 + AT_rich Low_complexity Low_complexity 1 22 0 2 1196 232 287 88 52 chr6 80165234 80165370 -69351667 - B1_Mus2 SINE Alu -2 145 5 2 1196 396 341 8 0 chr6 80165253 80165376 -69351661 - ID_B1 SINE B4 -21 203 80 2 1196 555 203 21 109 chr6 80165590 80165783 -69351254 + Lx2A LINE L1 6827 7002 -6 2 1196 25 0 0 0 chr6 80166549 80166574 -69350463 + AT_rich Low_complexity Low_complexity 1 25 0 2 1196 568 282 28 56 chr6 80166682 80166896 -69350141 - B3 SINE B2 -5 211 4 2 1196 263 262 16 16 chr6 80167063 80167125 -69349912 + B4 SINE B4 3 64 -228 2 1196 357 24 0 0 chr6 80167143 80167185 -69349852 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1196 21 36 0 0 chr6 80167412 80167440 -69349597 + AT_rich Low_complexity Low_complexity 1 28 0 2 1196 1142 82 0 0 chr6 80167516 80167663 -69349374 + B1_Mus2 SINE Alu 1 147 0 2 1196 288 120 0 0 chr6 80167663 80167713 -69349324 + (A)n Simple_repeat Simple_repeat 1 50 0 2 1196 424 59 14 14 chr6 80168507 80168576 -69348461 + (TTG)n Simple_repeat Simple_repeat 2 70 0 3 1196 231 36 0 0 chr6 80168576 80168603 -69348434 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1196 452 284 112 0 chr6 80168859 80168993 -69348044 - B3 SINE B2 -67 149 1 3 1196 379 208 14 0 chr6 80169157 80169229 -69347808 - B3A SINE B2 -114 84 12 3 1196 191 61 30 0 chr6 80169471 80169504 -69347533 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1196 392 172 0 11 chr6 80170088 80170176 -69346861 + CT-rich Low_complexity Low_complexity 3 89 0 3 1196 593 47 12 0 chr6 80170859 80170944 -69346093 + (TG)n Simple_repeat Simple_repeat 2 87 0 3 1196 579 323 93 42 chr6 80170991 80171250 -69345787 - B4A SINE B4 -20 272 1 3 1196 314 415 77 15 chr6 80172323 80172519 -69344518 - LTR33 LTR ERVL -208 307 100 3 1196 249 159 0 0 chr6 80172678 80172722 -69344315 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1196 4993 55 5 6 chr6 80172746 80173384 -69343653 - L1Md_F2 LINE L1 -1 6581 5945 3 1196 444 339 16 0 chr6 80173413 80173540 -69343497 + ID_B1 SINE B4 81 209 -15 3 1196 216 0 0 0 chr6 80173765 80173789 -69343248 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1196 421 208 64 36 chr6 80174061 80174171 -69342866 - PB1D9 SINE Alu -3 117 5 3 1196 24 53 0 0 chr6 80174462 80174500 -69342537 + AT_rich Low_complexity Low_complexity 1 38 0 3 1196 1122 71 7 22 chr6 80174560 80174838 -69342199 + (TG)n Simple_repeat Simple_repeat 1 273 0 3 1196 251 267 13 26 chr6 80174962 80175039 -69341998 - B4 SINE B4 -215 77 2 3 1196 441 156 0 0 chr6 80175396 80175473 -69341564 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1196 355 336 86 61 chr6 80175475 80175884 -69341153 - L1MD LINE L1 -2278 5717 5299 3 1196 225 233 0 0 chr6 80176053 80176096 -69340941 + CT-rich Low_complexity Low_complexity 3 45 0 3 1196 340 307 93 50 chr6 80176104 80176265 -69340772 - HAL1-3A_ME LINE L1 -419 2439 2272 3 1196 257 225 111 12 chr6 80177327 80177408 -69339629 - MER20 DNA MER1_type -4 215 127 3 1196 1564 206 132 0 chr6 80177549 80177952 -69339085 + Lx9 LINE L1 7168 7623 -21 3 1196 1202 170 46 0 chr6 80178986 80179204 -69337833 - Lx4A LINE L1 -2 7056 6829 3 1196 8187 42 0 3 chr6 80179219 80180357 -69336680 - L1Md_F2 LINE L1 -12 6570 5436 3 1196 450 0 0 0 chr6 80180593 80180643 -69336394 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1196 325 323 15 3 chr6 80180679 80180792 -69336245 - B3A SINE B2 -68 127 13 3 1196 772 332 53 32 chr6 80181746 80182029 -69335008 - B4 SINE B4 -2 290 2 3 1196 268 333 123 0 chr6 80182557 80182671 -69334366 - MIRb SINE MIR -112 156 29 3 1196 35 0 0 0 chr6 80182996 80183031 -69334006 + AT_rich Low_complexity Low_complexity 1 35 0 3 1196 612 289 14 0 chr6 80183131 80183273 -69333764 + B1F SINE Alu 6 149 0 3 1196 3761 18 0 0 chr6 80183302 80183737 -69333300 + L1Md_T LINE L1 5152 5586 -297 3 1196 8987 5 0 0 chr6 80183737 80184733 -69332304 + L1Md_T LINE L1 5587 6582 0 3 1196 189 260 103 13 chr6 80184972 80185050 -69331987 - L2 LINE L2 -344 3075 2991 3 1196 284 304 0 0 chr6 80185431 80185500 -69331537 + ID4_ SINE ID 1 69 -14 3 1196 180 0 0 0 chr6 80186159 80186179 -69330858 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1196 685 236 121 6 chr6 80186179 80186345 -69330692 - B3 SINE B2 -29 187 3 3 1196 277 150 104 104 chr6 80186714 80186781 -69330256 - ID4 SINE ID -2 81 15 3 1196 883 319 77 33 chr6 80186975 80187312 -69329725 - MTE2a LTR MaLR -8 371 20 3 1196 975 266 17 55 chr6 80187365 80187655 -69329382 + Lx6 LINE L1 7156 7434 -26 3 1196 330 346 38 25 chr6 80187685 80187842 -69329195 - LTR80B LTR ERVL -120 464 306 3 1196 28 0 0 0 chr6 80188527 80188555 -69328482 + AT_rich Low_complexity Low_complexity 1 28 0 3 1196 761 259 97 67 chr6 80188671 80189002 -69328035 + Lx8 LINE L1 7049 7389 -84 3 1196 884 328 18 68 chr6 80189907 80190303 -69326734 - MTEa LTR MaLR 0 379 4 3 1196 445 340 36 20 chr6 80191527 80191722 -69325315 - B3A SINE B2 0 198 1 3 1196 249 108 0 0 chr6 80191904 80191941 -69325096 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1196 405 102 0 0 chr6 80191941 80192000 -69325037 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1196 858 95 44 0 chr6 80192000 80192137 -69324900 - Lx LINE L1 -14 6640 6498 3 1196 351 284 53 35 chr6 80192700 80192813 -69324224 + RSINE1 SINE B4 13 127 -38 3 1196 198 0 0 0 chr6 80192832 80192854 -69324183 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1196 325 339 16 31 chr6 80192859 80192987 -69324050 - RSINE1 SINE B4 -38 127 2 3 1196 328 287 51 76 chr6 80192988 80193195 -69323842 - MER34 LTR ERV1 -9 562 323 3 1196 358 310 110 17 chr6 80193561 80193679 -69323358 + B3 SINE B2 58 186 -30 3 1196 318 132 0 0 chr6 80193690 80193743 -69323294 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 3 1196 604 205 75 58 chr6 80193743 80193896 -69323141 - B3 SINE B2 -2 214 60 3 1196 416 356 8 0 chr6 80194619 80194751 -69322286 + B1F1 SINE Alu 2 134 -15 3 1196 228 239 0 0 chr6 80195408 80195454 -69321583 + (CATG)n Simple_repeat Simple_repeat 1 46 0 3 1196 710 272 15 20 chr6 80195892 80196055 -69320982 + B3A SINE B2 1 163 -35 3 1196 432 0 0 0 chr6 80196055 80196103 -69320934 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1196 710 272 15 20 chr6 80196103 80196134 -69320903 + B3A SINE B2 164 194 -4 3 1196 237 314 25 12 chr6 80196134 80196234 -69320803 - MIRb SINE MIR -106 156 56 3 1196 491 340 25 6 chr6 80197052 80197215 -69319822 - B3A SINE B2 -31 167 2 3 1196 1159 127 40 0 chr6 80198047 80198220 -69318817 - B2_Mm2 SINE B2 -3 192 13 3 1196 188 301 54 72 chr6 80198911 80199022 -69318015 - L4 LINE RTE -633 1396 1288 3 1196 26 30 0 0 chr6 80199190 80199223 -69317814 + AT_rich Low_complexity Low_complexity 1 33 0 3 1196 324 0 0 0 chr6 80199371 80199407 -69317630 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 3 1196 726 345 120 6 chr6 80199560 80200091 -69316946 - Lx8 LINE L1 -1 7472 6881 3 1196 191 114 29 0 chr6 80200540 80200575 -69316462 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1196 660 178 0 16 chr6 80201648 80201831 -69315206 + GA-rich Low_complexity Low_complexity 1 180 0 3 1196 237 216 118 26 chr6 80201941 80202017 -69315020 - B4 SINE B4 -205 87 5 3 1196 28 0 0 0 chr6 80202229 80202257 -69314780 + AT_rich Low_complexity Low_complexity 1 28 0 3 1196 230 325 0 24 chr6 80202343 80202428 -69314609 + L1MC3 LINE L1 7468 7550 -235 3 1196 622 216 8 0 chr6 80202553 80202678 -69314359 - B3 SINE B2 -90 126 1 3 1196 309 294 55 0 chr6 80204376 80204485 -69312552 + PB1D10 SINE Alu 2 116 -1 3 1196 360 0 0 0 chr6 80204502 80204542 -69312495 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1196 399 38 0 0 chr6 80204724 80204777 -69312260 + L1_Mus2 LINE L1 6514 6566 0 3 1196 36 82 0 0 chr6 80204786 80204871 -69312166 + AT_rich Low_complexity Low_complexity 1 85 0 3 1196 597 271 77 92 chr6 80204879 80205242 -69311795 - MER67C LTR ERV1 -299 412 26 3 1196 1909 115 9 28 chr6 80205524 80205846 -69311191 - Lx LINE L1 0 6654 6339 3 1196 6445 220 41 21 chr6 80205861 80206754 -69310283 - Lx5 LINE L1 -1 7049 6145 3 1196 444 19 0 0 chr6 80206754 80206807 -69310230 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1196 6445 182 34 7 chr6 80206807 80207755 -69309282 - Lx5 LINE L1 -906 6144 5156 3 1196 903 247 74 16 chr6 80207836 80208079 -69308958 - Lx6 LINE L1 -14 7446 7190 3 1196 478 212 0 0 chr6 80208087 80208172 -69308865 + Lx6 LINE L1 6763 6847 -613 3 1196 342 0 0 0 chr6 80208272 80208310 -69308727 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1196 3103 51 8 5 chr6 80208856 80209251 -69307786 + MTA_Mm LTR MaLR 1 396 0 3 1196 255 258 635 30 chr6 80210022 80210156 -69306881 - B3A SINE B2 -1 215 1 3 1196 543 97 0 19 chr6 80210178 80210283 -69306754 - L1Md_F2 LINE L1 -3 6579 6477 3 1196 4085 78 13 2 chr6 80210283 80210822 -69306215 + L1Md_F2 LINE L1 5927 6471 -111 3 1196 32 43 0 0 chr6 80211008 80211054 -69305983 + AT_rich Low_complexity Low_complexity 1 46 0 3 1196 250 246 31 0 chr6 80211318 80211383 -69305654 - ID4_ SINE ID -16 67 1 3 1196 22 0 0 0 chr6 80212011 80212033 -69305004 + AT_rich Low_complexity Low_complexity 1 22 0 3 1196 551 308 19 19 chr6 80212043 80212205 -69304832 - RSINE1 SINE B4 0 165 4 3 1196 198 150 0 0 chr6 80212610 80212650 -69304387 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 1196 181 293 35 0 chr6 80212709 80212767 -69304270 - MIRc SINE MIR -45 223 164 3 1196 243 0 0 0 chr6 80212983 80213010 -69304027 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1196 24 53 0 0 chr6 80213171 80213209 -69303828 + AT_rich Low_complexity Low_complexity 1 38 0 3 1196 519 253 0 0 chr6 80213329 80213479 -69303558 + Lx9 LINE L1 7495 7644 0 3 1196 305 312 14 7 chr6 80213483 80213622 -69303415 + (TA)n Simple_repeat Simple_repeat 2 141 0 3 1196 355 385 29 39 chr6 80214643 80214851 -69302186 - MER58A DNA MER1_type -17 207 2 3 1196 252 0 0 0 chr6 80215159 80215187 -69301850 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1196 426 367 25 11 chr6 80215220 80215498 -69301539 - B4A SINE B4 -8 284 3 3 1196 647 196 21 35 chr6 80215576 80215719 -69301318 - RMER1C Other Other -1 1341 1201 3 1196 315 109 109 0 chr6 80215741 80215796 -69301241 - RMER1C Other Other -118 1224 1164 3 1197 207 0 0 0 chr6 80216811 80216834 -69300203 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 3 1197 25 31 0 0 chr6 80216870 80216902 -69300135 + AT_rich Low_complexity Low_complexity 1 32 0 4 1197 21 71 0 0 chr6 80216941 80216983 -69300054 + AT_rich Low_complexity Low_complexity 1 42 0 4 1197 665 309 6 11 chr6 80217818 80217991 -69299046 + B3A SINE B2 8 181 -17 4 1197 3538 8 3 0 chr6 80217991 80218383 -69298654 - MTA_Mm LTR MaLR 0 396 4 4 1197 327 49 0 0 chr6 80218383 80218424 -69298613 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1197 261 391 30 15 chr6 80219134 80219269 -69297768 + B4A SINE B4 5 141 -151 4 1197 360 0 0 0 chr6 80219353 80219393 -69297644 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1197 21 36 0 0 chr6 80220062 80220090 -69296947 + AT_rich Low_complexity Low_complexity 1 28 0 4 1197 342 0 0 0 chr6 80220183 80220221 -69296816 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1197 1058 178 329 10 chr6 80220418 80220707 -69296330 - ORR1C2 LTR MaLR -1 383 3 4 1197 439 193 34 0 chr6 80220869 80220957 -69296080 + RSINE1 SINE B4 42 132 -33 4 1197 507 177 64 8 chr6 80220988 80221113 -69295924 - Lx9 LINE L1 -9 7635 7504 4 1197 1423 235 66 6 chr6 80221129 80221463 -69295574 + ORR1B1 LTR MaLR 41 394 0 4 1197 1209 220 28 11 chr6 80221463 80221748 -69295289 + ORR1B1-int LTR MaLR 1 290 -1673 4 1197 23 0 0 0 chr6 80221749 80221772 -69295265 + AT_rich Low_complexity Low_complexity 1 23 0 4 1197 6957 177 64 93 chr6 80221864 80223606 -69293431 + ORR1B1-int LTR MaLR 260 1950 -13 4 1197 1384 182 38 93 chr6 80223608 80223953 -69293084 + ORR1B1 LTR MaLR 1 326 -3 4 1197 351 96 0 0 chr6 80223954 80224006 -69293031 + (CATA)n Simple_repeat Simple_repeat 1 52 0 4 1197 1586 223 7 0 chr6 80224010 80224315 -69292722 - Lx9 LINE L1 -179 7465 7159 4 1197 388 237 0 0 chr6 80224394 80224470 -69292567 + Lx9 LINE L1 6341 6416 -1228 4 1197 21 0 0 0 chr6 80226338 80226359 -69290678 + AT_rich Low_complexity Low_complexity 1 21 0 4 1197 1640 295 67 17 chr6 80226362 80227024 -69290013 - Lx8 LINE L1 -2 7471 6777 4 1197 640 337 11 21 chr6 80228023 80228042 -69288995 - B3A SINE B2 -11 187 171 4 1197 282 95 0 0 chr6 80228042 80228084 -69288953 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1197 640 337 11 21 chr6 80228084 80228252 -69288785 - B3A SINE B2 -28 170 2 4 1197 23 33 0 0 chr6 80228332 80228362 -69288675 + AT_rich Low_complexity Low_complexity 1 30 0 4 1197 552 183 0 0 chr6 80228451 80228593 -69288444 + CT-rich Low_complexity Low_complexity 2 143 0 4 1197 1070 76 6 0 chr6 80228876 80229047 -69287990 + (TCTA)n Simple_repeat Simple_repeat 2 173 0 4 1197 221 169 16 33 chr6 80230094 80230155 -69286882 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1197 1881 153 11 62 chr6 80230734 80231090 -69285947 - ORR1A1 LTR MaLR -8 338 1 4 1197 266 247 71 36 chr6 80231111 80231195 -69285842 + PB1 SINE Alu 18 104 -23 4 1197 654 278 50 5 chr6 80231419 80231613 -69285424 + B3A SINE B2 1 199 -17 4 1197 288 0 0 0 chr6 80231652 80231684 -69285353 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1197 441 0 0 0 chr6 80231684 80231732 -69285305 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1197 819 308 46 65 chr6 80232005 80232418 -69284619 - MTD LTR MaLR -14 405 1 4 1197 244 302 16 0 chr6 80232505 80232568 -69284469 + ID4_ SINE ID 4 67 -16 4 1197 2204 284 80 19 chr6 80232730 80233434 -69283603 + Lx9 LINE L1 6305 7051 -593 4 1197 651 285 0 34 chr6 80233794 80233943 -69283094 + B1_Mur4 SINE Alu 6 149 -1 4 1197 3129 71 5 12 chr6 80234081 80234510 -69282527 - L1Md_F2 LINE L1 -5 6577 6152 4 1197 968 308 81 7 chr6 80235059 80235344 -69281693 - MTEa LTR MaLR -6 373 68 4 1197 766 276 55 55 chr6 80235772 80236063 -69280974 + B4 SINE B4 2 292 0 4 1197 2352 255 161 18 chr6 80236505 80237352 -69279685 - Lx6 LINE L1 -26 7434 6250 4 1197 215 31 0 30 chr6 80237528 80237561 -69279476 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1197 820 284 68 10 chr6 80237710 80238005 -69279032 - RMER5 LTR ERV1 0 534 223 4 1197 1466 215 97 12 chr6 80239349 80239688 -69277349 + ORR1C1 LTR MaLR 1 368 -10 4 1197 1379 244 36 19 chr6 80239794 80240157 -69276880 - ORR1D2 LTR MaLR -1 369 1 4 1197 270 0 0 0 chr6 80240496 80240526 -69276511 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 4 1197 1163 153 116 0 chr6 80240526 80240742 -69276295 - Lx4A LINE L1 -4 7054 6814 4 1197 280 341 30 22 chr6 80240770 80240905 -69276132 - B4A SINE B4 -156 136 1 4 1197 596 320 42 38 chr6 80243153 80243442 -69273595 + L3 LINE CR1 3141 3430 -1059 4 1197 530 261 54 0 chr6 80243862 80243973 -69273064 + RSINE1 SINE B4 5 121 -44 4 1197 250 346 104 8 chr6 80244044 80244178 -69272859 + B1F SINE Alu 1 147 -2 4 1197 232 322 0 0 chr6 80244178 80244257 -69272780 + A-rich Low_complexity Low_complexity 11 89 0 4 1197 232 322 18 44 chr6 80245063 80245164 -69271873 - MIRm SINE MIR -171 97 3 4 1197 692 23 12 0 chr6 80246131 80246217 -69270820 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 1197 872 51 8 0 chr6 80246315 80246433 -69270604 + (TCTA)n Simple_repeat Simple_repeat 1 119 0 4 1197 565 300 109 76 chr6 80246465 80246703 -69270334 - B4A SINE B4 -46 246 1 4 1197 4384 134 50 1 chr6 80247739 80248319 -69268718 - Lx2B LINE L1 0 7000 6390 4 1197 180 0 0 0 chr6 80248319 80248339 -69268698 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 4 1197 4384 134 50 1 chr6 80248339 80248461 -69268576 - Lx2B LINE L1 -611 6389 6265 4 1197 581 246 13 47 chr6 80248704 80248853 -69268184 - B1_Mur1 SINE Alu -1 148 5 4 1197 252 143 0 0 chr6 80249379 80249421 -69267616 + (TCC)n Simple_repeat Simple_repeat 1 42 0 4 1197 238 193 35 17 chr6 80249422 80249480 -69267557 + CT-rich Low_complexity Low_complexity 4 62 0 4 1197 620 77 11 0 chr6 80249846 80249937 -69267100 + (TA)n Simple_repeat Simple_repeat 1 92 0 4 1197 210 71 0 0 chr6 80249986 80250014 -69267023 + (CAATA)n Simple_repeat Simple_repeat 3 30 0 4 1197 4542 52 16 0 chr6 80250877 80251126 -69265911 - L1_Mm LINE L1 -390 5493 5236 4 1197 216 0 0 0 chr6 80251126 80251150 -69265887 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1197 4542 52 16 0 chr6 80251150 80251477 -69265560 - L1_Mm LINE L1 -648 5235 4909 4 1197 3251 64 2 2 chr6 80251477 80251902 -69265135 + L1Md_F2 LINE L1 6158 6582 0 4 1197 460 256 108 32 chr6 80252215 80252401 -69264636 - Lx8 LINE L1 -7 7466 7267 4 1197 457 248 46 0 chr6 80252567 80252676 -69264361 - RLTR18B LTR ERVK -7 505 392 4 1197 288 0 0 0 chr6 80252676 80252708 -69264329 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 4 1197 192 77 0 0 chr6 80252714 80252740 -69264297 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 4 1197 2086 143 43 8 chr6 80253867 80254219 -69262818 + RMER4A LTR ERVK 103 466 0 4 1197 530 247 66 48 chr6 80254443 80254609 -69262428 + B3 SINE B2 48 216 0 4 1197 34004 80 6 7 chr6 80256231 80262181 -69254856 - L1Md_F2 LINE L1 -12 6570 631 4 1197 442 172 0 70 chr6 80262228 80262328 -69254709 + MLT1A0 LTR MaLR 273 365 0 4 1197 861 279 16 8 chr6 80262342 80262591 -69254446 - ORR1D1 LTR MaLR -103 271 21 4 1197 302 369 38 32 chr6 80262990 80263175 -69253862 - MER58A DNA MER1_type -37 187 2 4 1197 182 116 23 0 chr6 80264186 80264229 -69252808 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1197 579 96 0 0 chr6 80264457 80264540 -69252497 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 1197 344 229 69 92 chr6 80264930 80265060 -69251977 + MLT1B LTR MaLR 212 338 -52 4 1197 21 0 0 0 chr6 80265186 80265207 -69251830 + AT_rich Low_complexity Low_complexity 1 21 0 4 1197 508 45 0 15 chr6 80265393 80265460 -69251577 - L1_Mm LINE L1 -483 5400 5335 4 1197 7395 87 5 1 chr6 80265443 80266450 -69250587 + L1_Mus2 LINE L1 5560 6565 -1 4 1197 304 301 0 66 chr6 80266464 80266585 -69250452 + L1MC2 LINE L1 6159 6271 -73 4 1197 360 64 0 0 chr6 80266663 80266710 -69250327 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 4 1197 375 301 107 19 chr6 80267029 80267188 -69249849 - RMER15 LTR ERVL 0 575 403 4 1197 2680 138 55 4 chr6 80267197 80267655 -69249382 + Lx2 LINE L1 6516 6996 -1 4 1197 23 33 0 0 chr6 80268315 80268345 -69248692 + AT_rich Low_complexity Low_complexity 1 30 0 4 1197 422 333 0 18 chr6 80268350 80268463 -69248574 - RSINE1 SINE B4 -11 154 44 4 1197 1804 58 0 0 chr6 80268463 80268688 -69248349 - L1_Mus3 LINE L1 -728 5910 5686 4 1197 4445 93 57 0 chr6 80268688 80269342 -69247695 + L1_Mus3 LINE L1 5947 6637 -1 4 1197 438 211 0 42 chr6 80269342 80269355 -69247682 - L1MC LINE L1 -626 5718 5708 4 1197 186 43 0 0 chr6 80269355 80269378 -69247659 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1197 242 287 129 0 chr6 80270245 80270346 -69246691 - PB1D9 SINE Alu 0 120 7 4 1197 218 231 0 188 chr6 80270462 80270558 -69246479 + RSINE1 SINE B4 88 165 0 4 1197 495 0 0 0 chr6 80271046 80271101 -69245936 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1197 231 36 0 0 chr6 80271101 80271128 -69245909 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1197 363 271 73 40 chr6 80271438 80271615 -69245422 - L1MDa LINE L1 -847 5903 5721 4 1197 876 112 66 30 chr6 80271645 80271811 -69245226 - Lx LINE L1 -5 6649 6478 4 1197 439 350 52 59 chr6 80271888 80272393 -69244644 - L1MDa LINE L1 -895 5642 5142 4 1197 291 337 21 0 chr6 80272405 80272500 -69244537 - PB1D10 SINE Alu -1 116 20 4 1197 204 97 0 0 chr6 80272719 80272750 -69244287 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1197 22 56 0 0 chr6 80272838 80272874 -69244163 + AT_rich Low_complexity Low_complexity 1 36 0 4 1197 404 292 94 47 chr6 80272967 80273373 -69243664 - L1MDa LINE L1 -1596 4941 4517 4 1197 605 97 10 0 chr6 80273408 80273511 -69243526 + (TA)n Simple_repeat Simple_repeat 2 105 0 4 1197 4048 187 19 59 chr6 80273548 80274391 -69242646 - Lx5 LINE L1 -78 6972 6164 4 1197 1003 256 11 56 chr6 80274403 80274672 -69242365 - MTEb LTR MaLR -26 353 97 4 1197 34 42 0 0 chr6 80274694 80274742 -69242295 + AT_rich Low_complexity Low_complexity 1 48 0 4 1197 198 0 0 0 chr6 80274943 80274965 -69242072 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1197 1016 111 0 0 chr6 80274966 80275101 -69241936 - B1_Mus2 SINE Alu -12 135 1 5 1197 264 364 45 20 chr6 80275564 80275766 -69241271 - L1MDa LINE L1 -6087 546 340 4 1197 271 333 88 20 chr6 80275960 80276107 -69240930 - RSINE1 SINE B4 -6 159 3 5 1197 365 184 26 0 chr6 80276950 80277026 -69240011 + Lx5 LINE L1 6970 7047 -3 5 1197 243 0 0 0 chr6 80277350 80277377 -69239660 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1197 378 0 0 0 chr6 80277377 80277418 -69239619 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1197 261 310 77 8 chr6 80277648 80277778 -69239259 + MLT1B LTR MaLR 204 342 -48 5 1197 737 305 105 8 chr6 80277945 80278183 -69238854 - RMER15 LTR ERVL -15 560 300 5 1197 1086 289 76 21 chr6 80278398 80278727 -69238310 - ORR1E LTR MaLR -4 355 9 5 1197 263 289 29 49 chr6 80278986 80279088 -69237949 - MamGypLTR1a LTR Gypsy -31 753 654 5 1197 339 65 0 0 chr6 80279530 80279576 -69237461 + (ATTG)n Simple_repeat Simple_repeat 1 46 0 5 1197 647 275 23 30 chr6 80281158 80281432 -69235605 + Lx5 LINE L1 5609 5917 -1133 5 1197 324 350 92 0 chr6 80282089 80282209 -69234828 - B1_Mur2 SINE Alu -6 143 13 5 1197 7184 11 0 0 chr6 80282679 80283487 -69233550 + L1Md_A LINE L1 5775 6582 0 5 1197 363 78 0 0 chr6 80283643 80283694 -69233343 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1197 316 310 0 22 chr6 80283705 80283794 -69233243 - RSINE1 SINE B4 -22 143 57 5 1197 261 343 37 9 chr6 80283810 80283919 -69233118 + MER3 DNA MER1_type 13 124 -85 5 1197 2065 171 53 48 chr6 80284093 80284419 -69232618 + RMER6C LTR ERVK 1 337 -353 5 1197 1265 116 21 0 chr6 80284419 80284608 -69232429 + B2_Mm2 SINE B2 1 193 -2 5 1197 2065 209 50 56 chr6 80284608 80284798 -69232239 + RMER6C LTR ERVK 338 690 0 5 1197 404 340 12 18 chr6 80284934 80285099 -69231938 + RSINE1 SINE B4 2 165 0 5 1197 387 0 0 0 chr6 80285501 80285544 -69231493 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1197 550 154 0 0 chr6 80285589 80285680 -69231357 + RMER6C LTR ERVK 600 690 0 5 1197 1057 281 14 4 chr6 80285840 80286119 -69230918 + MTEa LTR MaLR 15 296 -83 5 1197 576 345 3 135 chr6 80286141 80286519 -69230518 + MTC LTR MaLR 70 397 -24 5 1197 311 359 80 24 chr6 80286783 80287034 -69230003 - Lx8 LINE L1 -22 7451 7187 5 1197 488 81 14 0 chr6 80287429 80287503 -69229534 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1197 197 220 65 48 chr6 80287583 80287645 -69229392 - MER5B DNA MER1_type -37 141 79 5 1197 709 296 164 27 chr6 80287692 80288057 -69228980 - MTD LTR MaLR 0 419 5 5 1197 1242 296 60 60 chr6 80289002 80289564 -69227473 + Lx8 LINE L1 6825 7386 -87 5 1197 40 0 0 0 chr6 80289825 80289865 -69227172 + AT_rich Low_complexity Low_complexity 1 40 0 5 1197 246 357 0 0 chr6 80289881 80289965 -69227072 - MER58D DNA MER1_type -302 84 1 5 1197 326 257 301 27 chr6 80290484 80290630 -69226407 + B3A SINE B2 2 187 -11 5 1197 182 370 37 43 chr6 80291644 80291805 -69225232 - L2 LINE L2 -703 2716 2557 5 1197 1090 264 102 46 chr6 80292096 80292489 -69224548 - MTD LTR MaLR 0 419 5 5 1197 711 286 123 30 chr6 80292911 80293243 -69223794 - MTEb LTR MaLR -14 365 3 5 1197 257 159 15 31 chr6 80293896 80293961 -69223076 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 5 1197 6217 103 8 15 chr6 80294046 80294961 -69222076 - Lx3_Mus LINE L1 -8 7001 6094 5 1197 2281 79 129 54 chr6 80295199 80295586 -69221451 - L1Md_F2 LINE L1 0 6582 6167 5 1197 198 0 0 0 chr6 80296222 80296244 -69220793 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1197 183 237 71 106 chr6 80296846 80296931 -69220106 + L4 LINE RTE 1257 1338 -691 5 1197 236 253 275 44 chr6 80296932 80297023 -69220014 + RSINE1 SINE B4 10 121 -44 5 1197 342 244 158 45 chr6 80297172 80297305 -69219732 - MTD LTR MaLR -53 366 219 5 1197 477 0 0 0 chr6 80297308 80297361 -69219676 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1197 4683 91 5 6 chr6 80297404 80298055 -69218982 - L1_Mus3 LINE L1 -7 6631 5982 5 1197 608 316 18 53 chr6 80298068 80298349 -69218688 - Lx9 LINE L1 -364 7280 7010 5 1197 622 342 0 25 chr6 80298557 80298719 -69218318 + RSINE1 SINE B4 8 165 0 5 1197 29 60 0 0 chr6 80298719 80298769 -69218268 + AT_rich Low_complexity Low_complexity 1 50 0 5 1197 39 74 0 0 chr6 80298816 80298897 -69218140 + AT_rich Low_complexity Low_complexity 1 81 0 5 1197 2413 227 48 48 chr6 80299975 80300582 -69216455 - RMER20B LTR ERVK 0 627 21 5 1197 219 78 19 38 chr6 80301670 80301723 -69215314 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 5 1197 336 234 0 61 chr6 80301723 80301805 -69215232 + ID_B1 SINE B4 81 157 -67 5 1197 21 36 0 0 chr6 80302292 80302320 -69214717 + AT_rich Low_complexity Low_complexity 1 28 0 5 1197 388 352 75 27 chr6 80305066 80305212 -69211825 - RSINE1 SINE B4 -4 161 9 5 1197 23 54 0 0 chr6 80305481 80305518 -69211519 + AT_rich Low_complexity Low_complexity 1 37 0 5 1197 332 315 41 68 chr6 80305666 80305852 -69211185 + MTEb LTR MaLR 193 377 -2 5 1197 539 112 11 0 chr6 80305852 80305941 -69211096 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 5 1197 390 77 0 0 chr6 80305941 80305993 -69211044 + (GAAAA)n Simple_repeat Simple_repeat 4 55 0 5 1197 508 337 58 11 chr6 80306754 80306928 -69210109 + B3A SINE B2 7 188 -10 5 1197 194 148 50 100 chr6 80307139 80307199 -69209838 + L3 LINE CR1 2553 2609 -1880 5 1197 5275 10 0 0 chr6 80308108 80308698 -69208339 - L1Md_T LINE L1 0 6582 5993 5 1197 477 191 0 0 chr6 80308929 80309034 -69208003 + GA-rich Low_complexity Low_complexity 2 106 0 5 1197 607 333 82 0 chr6 80309174 80309357 -69207680 + B4A SINE B4 95 292 0 5 1197 457 348 14 0 chr6 80309841 80309979 -69207058 + RSINE1 SINE B4 9 148 -17 5 1197 451 271 70 83 chr6 80310115 80310272 -69206765 - MTE2a LTR MaLR -59 320 166 5 1197 515 53 0 13 chr6 80310294 80310370 -69206667 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1197 491 304 48 7 chr6 80310401 80310547 -69206490 - B3A SINE B2 -42 156 5 5 1197 186 43 0 0 chr6 80311251 80311274 -69205763 + (AAATG)n Simple_repeat Simple_repeat 4 26 0 5 1197 414 0 0 0 chr6 80311940 80311986 -69205051 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1197 330 87 0 0 chr6 80311986 80312031 -69205006 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1197 2124 123 29 20 chr6 80312168 80312517 -69204520 + L1_Mus4 LINE L1 6275 6626 -10 5 1197 661 299 33 33 chr6 80312963 80313177 -69203860 + ID_B1 SINE B4 8 221 -3 5 1197 269 354 0 13 chr6 80313692 80313841 -69203196 + (CAT)n Simple_repeat Simple_repeat 1 147 0 5 1197 430 296 32 13 chr6 80313853 80314007 -69203030 + HAL1-2a_MD LINE L1 2350 2506 -518 5 1197 490 331 54 5 chr6 80314741 80314926 -69202111 - RMER30 DNA MER1_type -2 200 7 5 1197 1058 293 32 32 chr6 80315822 80316192 -69200845 - ORR1D2 LTR MaLR 0 370 1 5 1197 226 210 16 31 chr6 80317120 80317184 -69199853 + (TATG)n Simple_repeat Simple_repeat 2 64 0 5 1197 540 263 51 0 chr6 80317293 80317393 -69199644 + B1_Mur2 SINE Alu 1 100 -49 5 1197 261 0 0 0 chr6 80317393 80317422 -69199615 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1197 540 263 51 0 chr6 80317422 80317458 -69199579 + B1_Mur2 SINE Alu 101 142 -7 5 1197 2142 180 11 0 chr6 80317469 80317847 -69199190 + Lx2A1 LINE L1 6623 7004 -4 5 1197 670 296 6 22 chr6 80318332 80318515 -69198522 - B3 SINE B2 0 216 37 5 1197 22 56 0 0 chr6 80319681 80319717 -69197320 + AT_rich Low_complexity Low_complexity 1 36 0 5 1197 509 261 101 0 chr6 80320289 80320408 -69196629 - RSINE1 SINE B4 -31 134 4 5 1197 636 14 0 0 chr6 80320531 80320604 -69196433 + (GAAA)n Simple_repeat Simple_repeat 3 75 0 5 1197 466 191 21 0 chr6 80320605 80320699 -69196338 + Lx7 LINE L1 7598 7693 -3 5 1197 242 198 20 30 chr6 80320835 80320934 -69196103 - L1_Rod LINE L1 -3170 2677 2580 5 1197 225 83 0 0 chr6 80320934 80320970 -69196067 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1197 381 385 57 24 chr6 80321240 80321450 -69195587 + MIR SINE MIR 24 246 -22 5 1197 180 0 0 0 chr6 80321461 80321481 -69195556 + (CAT)n Simple_repeat Simple_repeat 3 22 0 5 1197 605 255 120 92 chr6 80321688 80322047 -69194990 + MTE2a LTR MaLR 9 377 -2 5 1197 712 277 5 21 chr6 80322699 80322891 -69194146 + B3A SINE B2 1 189 -9 5 1197 477 0 0 0 chr6 80323301 80323354 -69193683 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1197 242 161 16 0 chr6 80323888 80323934 -69193103 + GA-rich Low_complexity Low_complexity 3 49 0 5 1197 1053 150 0 0 chr6 80323934 80324114 -69192923 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1197 242 161 16 0 chr6 80324114 80324129 -69192908 + polypurine Low_complexity Low_complexity 50 64 0 5 1197 437 165 10 0 chr6 80324711 80324808 -69192229 + (TATG)n Simple_repeat Simple_repeat 3 100 0 5 1197 204 143 0 0 chr6 80324820 80324862 -69192175 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 5 1197 426 279 33 0 chr6 80324897 80325015 -69192022 - B1F1 SINE Alu -9 140 7 5 1197 342 343 54 40 chr6 80325015 80325037 -69192000 - B4 SINE B4 -66 188 76 5 1197 542 103 0 11 chr6 80325236 80325324 -69191713 + (TG)n Simple_repeat Simple_repeat 1 87 0 5 1197 326 346 18 27 chr6 80325326 80325436 -69191601 - RSINE1 SINE B4 -56 109 1 5 1197 24 32 0 0 chr6 80326025 80326056 -69190981 + AT_rich Low_complexity Low_complexity 1 31 0 6 1197 324 103 0 0 chr6 80326310 80326368 -69190669 + (T)n Simple_repeat Simple_repeat 1 58 0 6 1197 23 0 0 0 chr6 80326778 80326801 -69190236 + AT_rich Low_complexity Low_complexity 1 23 0 6 1197 232 250 12 0 chr6 80326842 80326922 -69190115 - Lx7 LINE L1 -19 7677 7597 6 1197 433 294 176 18 chr6 80327143 80327433 -69189604 + MER2 DNA MER2_type 4 336 -9 6 1197 3101 181 16 6 chr6 80327799 80328411 -69188626 - L1_Mur1 LINE L1 -855 5504 4862 6 1197 3482 122 18 6 chr6 80328411 80328957 -69188080 + L1_Mus4 LINE L1 6084 6636 0 6 1197 31904 30 0 0 chr6 80328958 80334382 -69182655 + L1Md_T LINE L1 66 5589 -297 6 1197 8917 9 0 0 chr6 80334382 80335435 -69181602 + L1Md_T LINE L1 5590 6585 0 6 1197 298 326 121 40 chr6 80335569 80335793 -69181244 + Zaphod DNA Tip100 2445 2686 -1345 6 1197 538 263 67 67 chr6 80335939 80336147 -69180890 - B3 SINE B2 -8 208 1 6 1197 542 214 8 31 chr6 80337691 80337821 -69179216 + MTD LTR MaLR 8 134 -285 6 1197 744 192 11 32 chr6 80337830 80338018 -69179019 - Lx4B LINE L1 -5 7053 6870 6 1197 2097 192 20 10 chr6 80338018 80338423 -69178614 - Lx4B LINE L1 -514 6544 6136 6 1197 510 184 409 15 chr6 80338423 80338628 -69178409 + MTD LTR MaLR 134 419 0 6 1197 362 305 216 22 chr6 80338886 80339020 -69178017 - B3A SINE B2 -38 160 1 6 1197 287 30 0 0 chr6 80339043 80339076 -69177961 - L1_Mm LINE L1 -1364 4519 4487 6 1197 3967 18 0 0 chr6 80339076 80339530 -69177507 + L1Md_T LINE L1 6129 6582 0 6 1197 215 354 13 0 chr6 80340455 80340534 -69176503 + ID4_ SINE ID 2 81 -2 6 1197 24 32 0 0 chr6 80340814 80340845 -69176192 + AT_rich Low_complexity Low_complexity 1 31 0 6 1197 23 78 0 0 chr6 80341044 80341095 -69175942 + AT_rich Low_complexity Low_complexity 1 51 0 6 1197 225 65 0 0 chr6 80341789 80341820 -69175217 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 1197 1165 42 7 0 chr6 80341820 80341963 -69175074 - B1_Mm SINE Alu -3 144 1 6 1197 951 341 97 50 chr6 80342432 80343258 -69173779 - Lx8 LINE L1 -6 7467 6603 6 1197 388 253 0 11 chr6 80344007 80344095 -69172942 - RMER5 LTR ERV1 -20 514 428 6 1197 45 0 0 0 chr6 80344111 80344156 -69172881 + AT_rich Low_complexity Low_complexity 1 45 0 6 149 35631 66 2 13 chr6 80344160 80350211 -69166826 - L1Md_F2 LINE L1 -17 6565 587 6 1198 262 235 89 56 chr6 80350212 80350302 -69166735 + MT2B2 LTR ERVL 195 287 -297 6 1198 316 288 125 48 chr6 80350225 80350393 -69166644 - RMER5 LTR ERV1 -125 409 229 6 1198 329 226 82 12 chr6 80350400 80350485 -69166552 - RMER5 LTR ERV1 -411 123 33 6 1198 843 105 96 22 chr6 80350625 80350761 -69166276 + B1_Mus1 SINE Alu 2 147 -1 6 1198 198 71 0 0 chr6 80350762 80350790 -69166247 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6 1198 200 300 0 41 chr6 80351514 80351587 -69165450 + A-rich Low_complexity Low_complexity 3 72 0 6 1198 337 291 32 24 chr6 80351554 80351826 -69165211 + GA-rich Low_complexity Low_complexity 1 274 0 6 1198 761 110 0 8 chr6 80351843 80351971 -69165066 + (GGAGA)n Simple_repeat Simple_repeat 4 130 0 6 1198 36 82 0 0 chr6 80353150 80353235 -69163802 + AT_rich Low_complexity Low_complexity 1 85 0 6 1198 233 262 0 0 chr6 80353441 80353502 -69163535 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1198 3070 211 69 28 chr6 80353611 80354324 -69162713 - RMER1C Other Other 0 1342 601 6 1198 468 0 0 0 chr6 80355039 80355091 -69161946 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1198 483 18 0 0 chr6 80355091 80355146 -69161891 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1198 210 383 93 32 chr6 80355748 80355964 -69161073 + B4 SINE B4 5 233 -59 6 1198 243 0 0 0 chr6 80356031 80356058 -69160979 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1198 228 67 0 0 chr6 80356058 80356088 -69160949 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1198 183 345 86 0 chr6 80356997 80357055 -69159982 - L3 LINE CR1 -1392 3097 3035 6 1198 225 0 0 0 chr6 80357260 80357285 -69159752 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1198 21 0 0 0 chr6 80357380 80357401 -69159636 + AT_rich Low_complexity Low_complexity 1 21 0 6 1198 580 307 0 7 chr6 80357618 80357772 -69159265 - RSINE1 SINE B4 -8 157 5 6 1198 22 35 0 0 chr6 80358740 80358769 -69158268 + AT_rich Low_complexity Low_complexity 1 29 0 6 1198 25 0 0 0 chr6 80358868 80358893 -69158144 + AT_rich Low_complexity Low_complexity 1 25 0 6 1198 3781 109 32 22 chr6 80359021 80359621 -69157416 - Lx LINE L1 -7 6647 6042 6 1198 222 62 0 0 chr6 80359811 80359843 -69157194 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1198 437 291 34 41 chr6 80360439 80360586 -69156451 + ID_B1 SINE B4 78 223 -1 6 1198 935 284 81 36 chr6 80360650 80360982 -69156055 - ORR1E LTR MaLR -5 354 8 6 1198 2641 26 0 0 chr6 80362364 80362670 -69154367 + L1Md_A LINE L1 5281 5586 -297 6 1198 8582 24 0 0 chr6 80362670 80363664 -69153373 + L1Md_A LINE L1 5587 6580 -2 6 1198 282 392 38 45 chr6 80364135 80364426 -69152611 + Lx8 LINE L1 7034 7322 -151 6 1198 459 0 0 0 chr6 80364426 80364477 -69152560 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1198 561 15 0 0 chr6 80364477 80364542 -69152495 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1198 399 267 123 45 chr6 80364795 80365015 -69152022 + Lx8 LINE L1 7233 7469 -4 6 1198 264 286 72 50 chr6 80365350 80365530 -69151507 + L1MB1 LINE L1 5911 6094 -74 6 1198 278 333 9 18 chr6 80365657 80365767 -69151270 + (TATG)n Simple_repeat Simple_repeat 3 111 0 6 1198 689 280 33 0 chr6 80366001 80366183 -69150854 - MTE2a LTR MaLR 0 379 192 6 1198 690 102 0 0 chr6 80367096 80367214 -69149823 + (TC)n Simple_repeat Simple_repeat 2 119 0 6 1198 246 194 31 31 chr6 80367321 80367385 -69149652 - B4A SINE B4 -41 251 188 6 1198 783 152 21 0 chr6 80367542 80367687 -69149350 - URR1A DNA MER1_type -7 219 72 6 1198 357 262 154 16 chr6 80367687 80367724 -69149313 + CYRA11_Mm Unknown Y-chromosome 178 384 -233 6 1198 1458 46 30 10 chr6 80367844 80368043 -69148994 + L1Md_F2 LINE L1 6367 6569 -13 6 1198 21 0 0 0 chr6 80368063 80368084 -69148953 + GC_rich Low_complexity Low_complexity 1 21 0 6 1198 482 345 85 51 chr6 80368498 80368791 -69148246 + ORR1E LTR MaLR 1 303 -56 6 1198 1365 76 15 5 chr6 80369028 80369227 -69147810 - L1Md_F2 LINE L1 -2 6580 6380 6 1198 2503 193 13 2 chr6 80369227 80369678 -69147359 + RMER6B LTR ERVK 6 461 0 6 1198 22 35 0 0 chr6 80370061 80370090 -69146947 + AT_rich Low_complexity Low_complexity 1 29 0 6 1198 982 103 58 0 chr6 80370443 80370598 -69146439 - B2_Mm2 SINE B2 -5 190 27 6 1198 3118 84 16 7 chr6 80370608 80371051 -69145986 - L1Md_F2 LINE L1 0 6582 6136 6 1198 904 36 0 0 chr6 80371051 80371161 -69145876 + L1Md_F2 LINE L1 6004 6113 -469 6 1198 266 78 24 0 chr6 80371161 80371208 -69145829 - B3 SINE B2 -137 58 8 6 1198 3739 70 72 0 chr6 80371208 80371708 -69145329 + L1_Mus1 LINE L1 6032 6567 0 6 1198 1043 178 13 44 chr6 80371723 80371952 -69145085 + Lx2A1 LINE L1 6787 7008 0 6 1198 279 154 62 25 chr6 80371977 80372057 -69144980 + (TATAA)n Simple_repeat Simple_repeat 5 87 0 6 1198 265 309 71 0 chr6 80372264 80372348 -69144689 - RSINE1 SINE B4 -73 92 3 6 1198 290 241 0 0 chr6 80373024 80373082 -69143955 - Lx8 LINE L1 -143 7330 7273 6 1198 456 19 0 0 chr6 80373360 80373413 -69143624 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1198 366 23 0 0 chr6 80373413 80373455 -69143582 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1198 548 120 0 10 chr6 80373455 80373556 -69143481 + (GA)n Simple_repeat Simple_repeat 1 100 0 6 1198 441 0 0 0 chr6 80374389 80374438 -69142599 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1198 228 35 0 0 chr6 80374481 80374510 -69142527 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1198 363 356 0 20 chr6 80374794 80374946 -69142091 - Lx8 LINE L1 -303 7170 7022 6 1198 975 318 74 15 chr6 80375092 80375527 -69141510 - Lx8 LINE L1 -810 6834 6323 6 1198 260 357 62 7 chr6 80375959 80376103 -69140934 - Lx8 LINE L1 -134 7339 7188 6 1198 306 0 0 0 chr6 80376184 80376218 -69140819 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 6 1198 498 389 50 25 chr6 80376921 80377282 -69139755 + LTR16A LTR ERVL 69 438 -13 6 1198 601 284 59 6 chr6 80377363 80377533 -69139504 - MTC LTR MaLR -242 179 1 6 1198 5131 155 2 0 chr6 80377792 80378625 -69138412 - Lx LINE L1 -12 6642 5808 6 1198 249 33 0 0 chr6 80379440 80379470 -69137567 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1198 263 158 18 0 chr6 80379474 80379531 -69137506 + Lx9 LINE L1 7584 7641 -3 6 1198 28 71 0 0 chr6 80379993 80380049 -69136988 + AT_rich Low_complexity Low_complexity 1 56 0 6 1198 205 134 60 24 chr6 80380055 80380139 -69136898 + (TATAA)n Simple_repeat Simple_repeat 5 91 0 6 1198 315 0 0 0 chr6 80380313 80380348 -69136689 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1198 504 339 35 94 chr6 80380771 80380816 -69136221 + B4A SINE B4 5 49 -243 6 1198 3823 66 16 0 chr6 80380816 80381319 -69135718 + L1Md_F2 LINE L1 6071 6581 -1 6 1198 504 339 35 94 chr6 80381319 80381527 -69135510 + B4A SINE B4 50 243 -49 6 1198 375 23 0 0 chr6 80381571 80381615 -69135422 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1198 596 371 62 36 chr6 80382860 80383134 -69133903 + B4 SINE B4 8 288 -4 6 1198 245 246 49 0 chr6 80383171 80383232 -69133805 + CT-rich Low_complexity Low_complexity 3 66 0 6 1198 479 317 18 35 chr6 80383303 80383473 -69133564 - B3A SINE B2 -7 191 25 6 1198 3563 202 50 14 chr6 80383520 80384234 -69132803 + RMER1A Other Other 287 1026 -4 6 1198 1147 35 14 7 chr6 80384690 80384833 -69132204 + B1_Mur4 SINE Alu 1 144 -6 6 1198 207 0 0 0 chr6 80384835 80384858 -69132179 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1198 483 321 6 67 chr6 80385731 80385911 -69131126 + MTD LTR MaLR 63 231 -188 6 1198 30 45 0 0 chr6 80386705 80386749 -69130288 + AT_rich Low_complexity Low_complexity 1 44 0 6 1198 2633 205 47 133 chr6 80388468 80389256 -69127781 + RMER6D LTR ERVK 1 720 0 6 1198 628 313 0 27 chr6 80389647 80389834 -69127203 - B3A SINE B2 -15 183 2 7 1198 961 272 5 5 chr6 80389929 80390136 -69126901 - B3 SINE B2 -1 215 9 7 1198 1040 164 26 0 chr6 80391130 80391319 -69125718 + Lx2A LINE L1 6806 6999 -9 7 1198 273 57 0 0 chr6 80391347 80391382 -69125655 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 7 1198 270 360 44 7 chr6 80391492 80391629 -69125408 + ID_B1 SINE B4 81 222 -2 7 1198 297 317 0 0 chr6 80392242 80392324 -69124713 + B1_Mur1 SINE Alu 63 144 -5 7 1198 387 182 0 0 chr6 80392326 80392403 -69124634 + (CAGA)n Simple_repeat Simple_repeat 3 79 0 7 1198 22 35 0 0 chr6 80392712 80392741 -69124296 + AT_rich Low_complexity Low_complexity 1 29 0 7 1198 309 273 15 36 chr6 80393022 80393159 -69123878 + (TATG)n Simple_repeat Simple_repeat 3 136 0 7 1198 399 183 0 0 chr6 80393381 80393463 -69123574 + CT-rich Low_complexity Low_complexity 2 83 0 7 1198 250 302 11 23 chr6 80393486 80393574 -69123463 + CT-rich Low_complexity Low_complexity 3 89 0 7 1198 282 328 27 95 chr6 80394031 80394091 -69122946 - B3 SINE B2 -10 206 147 7 1198 483 18 0 0 chr6 80394091 80394147 -69122890 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1198 282 328 27 95 chr6 80394147 80394234 -69122803 - B3 SINE B2 -70 146 69 7 1198 1602 198 66 3 chr6 80394323 80394687 -69122350 - MTD LTR MaLR -2 417 31 7 1198 240 35 0 0 chr6 80394688 80394717 -69122320 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1198 190 195 24 0 chr6 80394892 80394974 -69122063 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 7 1198 195 42 0 0 chr6 80395552 80395576 -69121461 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1198 485 286 0 0 chr6 80395882 80395987 -69121050 - RSINE1 SINE B4 -57 108 4 7 1198 649 269 40 12 chr6 80396299 80396472 -69120565 - B3A SINE B2 -18 180 3 7 1198 27 0 0 0 chr6 80397174 80397201 -69119836 + AT_rich Low_complexity Low_complexity 1 27 0 7 1198 285 335 82 53 chr6 80397765 80397935 -69119102 + B4A SINE B4 4 178 -114 7 1198 273 296 11 0 chr6 80398007 80398095 -69118942 + (CATATA)n Simple_repeat Simple_repeat 4 92 0 7 1198 1037 70 7 0 chr6 80398096 80398239 -69118798 + (GA)n Simple_repeat Simple_repeat 2 145 0 7 1198 1070 189 54 54 chr6 80398255 80398495 -69118542 - ORR1B2 LTR MaLR -127 240 1 7 1198 1336 45 40 0 chr6 80399565 80399742 -69117295 + L1Md_A LINE L1 6399 6582 0 7 1198 350 317 56 7 chr6 80402016 80402159 -69114878 - MT2A LTR ERVL -354 179 30 7 1198 1884 208 131 93 chr6 80402877 80403556 -69113481 + Lx7 LINE L1 6984 7688 -8 7 1198 705 329 62 12 chr6 80403667 80404005 -69113032 + Lx8 LINE L1 6984 7338 -135 7 1198 330 300 17 97 chr6 80404140 80404318 -69112719 - B3A SINE B2 -2 214 51 7 1198 410 0 0 20 chr6 80405987 80406038 -69110999 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 7 1198 180 111 0 0 chr6 80407023 80407050 -69109987 + (TATG)n Simple_repeat Simple_repeat 2 28 0 7 1198 423 0 0 0 chr6 80407050 80407097 -69109940 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1198 606 28 0 0 chr6 80407110 80407182 -69109855 + (GA)n Simple_repeat Simple_repeat 2 73 0 7 1198 757 221 6 52 chr6 80407820 80407992 -69109045 - RSINE1 SINE B4 0 165 2 7 1198 180 0 0 0 chr6 80408719 80408739 -69108298 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1198 5081 22 0 0 chr6 80408784 80409368 -69107669 - L1Md_A LINE L1 0 6582 5999 7 1198 243 88 0 0 chr6 80409580 80409614 -69107423 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 7 1198 201 167 18 36 chr6 80409642 80409698 -69107339 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 7 1198 233 333 10 82 chr6 80410077 80410175 -69106862 - B3A SINE B2 -1 197 107 7 1198 29 47 0 0 chr6 80410229 80410272 -69106765 + AT_rich Low_complexity Low_complexity 1 43 0 7 1198 573 319 68 1 chr6 80410496 80410688 -69106349 + B3A SINE B2 9 216 0 7 1198 1187 270 86 24 chr6 80411177 80411640 -69105397 - L1MA8 LINE L1 -418 5873 5382 7 1198 255 164 0 0 chr6 80411758 80411819 -69105218 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 1198 225 196 65 93 chr6 80411842 80411949 -69105088 - L1MA8 LINE L1 -926 5217 5114 7 1198 377 297 47 28 chr6 80412293 80412508 -69104529 - L1MA8 LINE L1 -1435 4705 4487 7 1198 723 274 56 84 chr6 80412540 80412755 -69104282 - B3 SINE B2 -5 211 3 7 1198 221 362 0 0 chr6 80412828 80412908 -69104129 - ID2 SINE ID 0 83 4 7 1198 495 0 0 0 chr6 80413830 80413885 -69103152 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 1198 225 0 0 0 chr6 80413885 80413910 -69103127 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1198 633 90 0 0 chr6 80414538 80414627 -69102410 + (TC)n Simple_repeat Simple_repeat 2 90 0 7 1198 781 91 0 9 chr6 80414630 80414741 -69102296 - B1_Mus1 SINE Alu 0 148 39 7 1198 1789 234 25 5 chr6 80414944 80415352 -69101685 - MTC LTR MaLR -1 420 5 7 1198 4839 34 0 0 chr6 80415678 80416246 -69100791 - L1Md_T LINE L1 -2 6580 6013 7 1198 198 0 0 0 chr6 80417310 80417332 -69099705 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 1198 208 220 0 57 chr6 80417460 80417513 -69099524 + GA-rich Low_complexity Low_complexity 6 55 0 7 1198 8062 153 23 6 chr6 80418176 80419677 -69097360 + Lx4A LINE L1 5481 7019 -39 7 1198 905 129 23 0 chr6 80419677 80419848 -69097189 + GA-rich Low_complexity Low_complexity 2 176 0 7 1198 504 48 0 0 chr6 80419851 80419914 -69097123 + (GAGAA)n Simple_repeat Simple_repeat 1 63 0 7 1198 188 388 9 0 chr6 80420149 80420265 -69096772 - L2 LINE L2 -1449 1970 1854 7 1198 24 0 0 0 chr6 80420473 80420497 -69096540 + AT_rich Low_complexity Low_complexity 1 24 0 7 1198 251 404 14 0 chr6 80420849 80420995 -69096042 - MER58B DNA MER1_type -31 310 163 7 1198 22 0 0 0 chr6 80421472 80421494 -69095543 + AT_rich Low_complexity Low_complexity 1 22 0 7 1198 395 125 14 0 chr6 80421495 80421567 -69095470 + (TC)n Simple_repeat Simple_repeat 1 73 0 7 1198 401 0 20 0 chr6 80421567 80421616 -69095421 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1198 574 355 55 35 chr6 80421664 80422011 -69095026 + MLT1A0 LTR MaLR 10 363 -2 7 1198 432 0 0 0 chr6 80422362 80422410 -69094627 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1198 315 0 0 0 chr6 80423769 80423804 -69093233 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1198 522 67 0 0 chr6 80423804 80423878 -69093159 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 1198 563 327 70 8 chr6 80423971 80424227 -69092810 - B4A SINE B4 -18 274 3 7 1198 486 0 0 0 chr6 80424651 80424705 -69092332 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1198 621 0 0 0 chr6 80424706 80424775 -69092262 + (GA)n Simple_repeat Simple_repeat 1 69 0 7 1198 735 257 75 16 chr6 80425643 80425829 -69091208 + B3 SINE B2 9 205 -11 7 1198 635 295 10 54 chr6 80427541 80427745 -69089292 + B3A SINE B2 2 196 -2 7 1198 21 0 0 0 chr6 80428299 80428320 -69088717 + AT_rich Low_complexity Low_complexity 1 21 0 7 1198 22 35 0 0 chr6 80428592 80428621 -69088416 + AT_rich Low_complexity Low_complexity 1 29 0 7 1198 288 346 144 73 chr6 80428693 80428964 -69088073 - B4A SINE B4 -2 290 1 7 1198 253 380 56 15 chr6 80429976 80430313 -69086724 + L1M4 LINE L1 521 871 -5671 7 1198 329 358 24 0 chr6 80430420 80430585 -69086452 + L1M4 LINE L1 2934 3102 -3542 7 1198 822 273 21 0 chr6 80430707 80430901 -69086136 + B3 SINE B2 16 213 -3 7 1198 180 77 0 0 chr6 80430990 80431016 -69086021 + (GA)n Simple_repeat Simple_repeat 1 26 0 7 1198 370 236 76 22 chr6 80431047 80431272 -69085765 + L1M4 LINE L1 3390 3626 -3018 7 1198 504 324 10 93 chr6 80431434 80431638 -69085399 + B3A SINE B2 6 192 -6 7 1198 275 274 95 39 chr6 80431675 80431907 -69085130 + L1M4 LINE L1 3820 4064 -2580 7 1198 492 95 0 0 chr6 80431912 80431996 -69085041 + (TG)n Simple_repeat Simple_repeat 2 85 0 7 1198 452 349 55 0 chr6 80432002 80432148 -69084889 - B3A SINE B2 -44 154 1 7 1198 807 174 153 35 chr6 80432161 80432363 -69084674 - URR1A DNA MER1_type 0 226 1 7 1198 711 270 14 24 chr6 80432439 80432731 -69084306 + L1M4 LINE L1 4148 4436 -2208 7 1198 561 329 0 14 chr6 80433257 80433405 -69083632 + RSINE1 SINE B4 6 151 -14 7 1198 251 85 0 21 chr6 80433423 80433471 -69083566 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1198 27 0 0 0 chr6 80433797 80433824 -69083213 + AT_rich Low_complexity Low_complexity 1 27 0 7 1198 662 284 113 0 chr6 80433915 80434172 -69082865 - L1M2 LINE L1 -1227 4916 4631 7 1198 450 0 0 0 chr6 80434211 80434261 -69082776 + (TA)n Simple_repeat Simple_repeat 1 50 0 7 1198 228 300 18 0 chr6 80434469 80434579 -69082458 + L1M4 LINE L1 5813 5924 -758 7 1198 483 165 0 0 chr6 80434756 80434865 -69082172 + (CA)n Simple_repeat Simple_repeat 1 109 0 7 1198 2944 150 26 4 chr6 80434892 80435394 -69081643 + Lx4A LINE L1 6544 7056 -2 7 1198 710 267 32 27 chr6 80435434 80435619 -69081418 + B3 SINE B2 8 193 -23 7 1198 3020 107 11 0 chr6 80435817 80436267 -69080770 - L1_Mus4 LINE L1 -1 6635 6181 7 1198 210 308 95 56 chr6 80436442 80436621 -69080416 - MIR SINE MIR -19 243 58 7 1198 379 226 0 15 chr6 80436691 80436826 -69080211 + (TG)n Simple_repeat Simple_repeat 2 134 0 7 1198 325 246 16 24 chr6 80436839 80436964 -69080073 + (TG)n Simple_repeat Simple_repeat 1 124 0 7 1198 183 80 0 0 chr6 80436965 80436990 -69080047 + (GA)n Simple_repeat Simple_repeat 1 25 0 7 1198 2086 89 16 10 chr6 80438754 80439060 -69077977 + L1_Mus1 LINE L1 6260 6567 0 7 1198 280 341 0 0 chr6 80439164 80439246 -69077791 + B3A SINE B2 2 83 -115 7 1198 420 20 0 0 chr6 80439308 80439357 -69077680 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1198 524 62 12 0 chr6 80439357 80439438 -69077599 + (GA)n Simple_repeat Simple_repeat 1 82 0 7 1198 463 306 19 107 chr6 80439690 80439888 -69077149 + B3A SINE B2 2 181 -17 7 1198 591 71 0 0 chr6 80439888 80439973 -69077064 + (GA)n Simple_repeat Simple_repeat 2 86 0 7 1198 463 306 19 107 chr6 80439973 80439990 -69077047 + B3A SINE B2 182 198 0 7 1198 519 31 0 0 chr6 80440287 80440352 -69076685 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1198 1214 78 2 0 chr6 80441375 80441924 -69075113 + (GGA)n Simple_repeat Simple_repeat 1 550 0 7 1198 1275 84 1 2 chr6 80441947 80443113 -69073924 + (GGA)n Simple_repeat Simple_repeat 1 1165 0 7 1198 210 399 75 27 chr6 80443505 80443652 -69073385 - MIRc SINE MIR -60 208 55 8 1198 221 262 18 53 chr6 80443751 80443864 -69073173 + (TATATG)n Simple_repeat Simple_repeat 6 114 0 8 1198 360 0 0 0 chr6 80443893 80443933 -69073104 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1198 1833 285 46 26 chr6 80443945 80444636 -69072401 - Lx9 LINE L1 -195 7449 6745 8 1198 515 341 50 16 chr6 80444795 80444977 -69072060 - ID_B1 SINE B4 -3 221 34 8 1198 468 256 0 204 chr6 80444979 80445180 -69071857 + B3A SINE B2 35 194 -1 8 1198 31 58 0 0 chr6 80445466 80445518 -69071519 + AT_rich Low_complexity Low_complexity 1 52 0 8 1198 560 386 43 16 chr6 80445881 80446255 -69070782 + Lx8 LINE L1 7007 7390 -83 8 1198 1169 216 61 80 chr6 80446257 80446765 -69070272 + RMER2 LTR ERV1 1 567 0 8 1198 510 61 0 0 chr6 80448874 80448940 -69068097 + (TA)n Simple_repeat Simple_repeat 2 67 0 8 1198 363 113 0 0 chr6 80449936 80449998 -69067039 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1198 32 57 0 0 chr6 80451119 80451172 -69065865 + AT_rich Low_complexity Low_complexity 1 53 0 8 1198 494 70 14 0 chr6 80451260 80451331 -69065706 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 1198 2033 327 66 24 chr6 80451356 80452286 -69064751 - Lx8 LINE L1 -155 7318 6350 8 1198 706 28 37 0 chr6 80452391 80452498 -69064539 - L1Md_F3 LINE L1 -1 6583 6473 8 1198 23 33 0 0 chr6 80453802 80453832 -69063205 + AT_rich Low_complexity Low_complexity 1 30 0 8 1198 1516 161 47 0 chr6 80454510 80454784 -69062253 - RLTR15 LTR ERVK -3 356 70 8 1198 486 306 151 0 chr6 80454930 80455116 -69061921 - ID_B1 SINE B4 -9 215 2 8 1198 330 344 48 40 chr6 80456151 80456378 -69060659 - Lx8 LINE L1 -244 7229 7001 8 1198 3061 207 23 35 chr6 80456716 80457462 -69059575 - L1_Mur2 LINE L1 -655 5222 4486 8 1198 1860 289 150 9 chr6 80457458 80458145 -69058892 + Lx6 LINE L1 6648 7431 -29 8 1198 246 62 0 0 chr6 80458145 80458177 -69058860 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 8 1198 624 359 25 5 chr6 80458574 80458770 -69058267 + B3 SINE B2 6 205 -11 8 1198 24 67 0 0 chr6 80458775 80458820 -69058217 + AT_rich Low_complexity Low_complexity 1 45 0 8 1198 8100 49 2 0 chr6 80458820 80459971 -69057066 - L1Md_F2 LINE L1 -11 6571 5419 8 1198 241 286 0 0 chr6 80460248 80460311 -69056726 + MER102b DNA MER1_type 107 169 -172 8 1198 525 255 97 35 chr6 80460332 80460526 -69056511 + MTEa LTR MaLR 146 373 -6 8 1198 327 365 91 24 chr6 80461270 80461478 -69055559 + MLT1C LTR MaLR 245 466 -1 8 1198 636 204 17 0 chr6 80462006 80462182 -69054855 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1198 22 0 0 0 chr6 80462235 80462257 -69054780 + AT_rich Low_complexity Low_complexity 1 22 0 8 1198 546 325 20 35 chr6 80462670 80462871 -69054166 + B3A SINE B2 1 198 0 8 1198 395 333 41 0 chr6 80463355 80463478 -69053559 + RSINE1 SINE B4 9 136 -29 8 1198 1066 186 106 1 chr6 80463494 80463714 -69053323 + RMER6C LTR ERVK 1 251 -469 8 1198 195 113 57 0 chr6 80463714 80463767 -69053270 + (CAGTT)n Simple_repeat Simple_repeat 2 57 0 8 1198 1362 174 93 21 chr6 80463767 80464103 -69052934 + RMER6C LTR ERVK 252 678 -12 8 1198 213 292 18 9 chr6 80464105 80464219 -69052818 + (TAAA)n Simple_repeat Simple_repeat 2 116 0 8 1198 714 250 60 0 chr6 80464513 80464713 -69052324 - B3 SINE B2 -4 212 1 8 1198 459 0 0 0 chr6 80465049 80465100 -69051937 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 1198 593 308 85 32 chr6 80466544 80466732 -69050305 + B3A SINE B2 1 198 0 8 1198 541 325 81 0 chr6 80466939 80467173 -69049864 + Lx8 LINE L1 7079 7331 -142 8 1198 570 168 7 14 chr6 80467310 80467322 -69049715 + polypurine Low_complexity Low_complexity 1 12 0 8 1198 1160 72 0 27 chr6 80467322 80467507 -69049530 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 8 1198 570 168 7 14 chr6 80467507 80467633 -69049404 + GA-rich Low_complexity Low_complexity 13 138 0 8 1198 2845 69 37 7 chr6 80467749 80468158 -69048879 - BGLII LTR ERVK 0 421 1 8 1198 32 0 0 0 chr6 80468941 80468973 -69048064 + AT_rich Low_complexity Low_complexity 1 32 0 8 1198 273 317 19 38 chr6 80469119 80469224 -69047813 - RSINE1 SINE B4 -61 104 2 8 1198 385 323 20 12 chr6 80470022 80470159 -69046878 - PB1D7 SINE Alu -1 148 7 8 1198 253 229 38 16 chr6 80471451 80471534 -69045503 - ORR1E LTR MaLR -18 361 269 8 1198 289 295 35 133 chr6 80471578 80471850 -69045187 - L1_Mm LINE L1 -1083 4797 4608 8 1198 1090 84 14 0 chr6 80471850 80471993 -69045044 - B1_Mus1 SINE Alu 0 148 4 8 1198 403 221 52 40 chr6 80471993 80472200 -69044837 - L1_Mm LINE L1 -1536 4607 4367 8 1198 293 330 85 17 chr6 80472273 80472449 -69044588 - ORR1E LTR MaLR -171 188 1 8 1198 330 26 0 0 chr6 80472648 80472687 -69044350 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 1198 544 158 12 6 chr6 80472687 80472853 -69044184 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 8 1198 1348 103 42 0 chr6 80473328 80473542 -69043495 + L1_Mus3 LINE L1 6406 6628 -10 8 1198 501 257 73 127 chr6 80473551 80473716 -69043321 + B3 SINE B2 27 182 -11 8 1198 1005 107 0 0 chr6 80474377 80474526 -69042511 + (TG)n Simple_repeat Simple_repeat 1 149 0 8 1198 693 92 0 0 chr6 80474666 80474764 -69042273 + (GGAA)n Simple_repeat Simple_repeat 4 101 0 8 1198 192 77 0 0 chr6 80474802 80474828 -69042209 + (GGAGAA)n Simple_repeat Simple_repeat 2 27 0 8 1198 4831 72 11 3 chr6 80474926 80475566 -69041471 - L1Md_F2 LINE L1 0 6582 5938 8 1198 500 62 0 0 chr6 80475566 80475630 -69041407 + L1_Mm LINE L1 4787 4850 -1033 8 1198 607 268 151 47 chr6 80475702 80475960 -69041077 + B4A SINE B4 8 292 0 8 1198 221 244 0 0 chr6 80476586 80476627 -69040410 + polypyrimidine Low_complexity Low_complexity 2 42 0 8 1198 548 379 40 76 chr6 80476627 80477098 -69039939 + L1MDa LINE L1 1 454 -6179 8 1198 4115 75 16 7 chr6 80477267 80477828 -69039209 + L1Md_F2 LINE L1 6005 6570 -12 8 149 522 339 107 26 chr6 80477878 80478223 -69038814 + MTE2a LTR MaLR 3 375 -4 8 1199 428 290 55 47 chr6 80478262 80478519 -69038518 + L1MDa LINE L1 3209 3467 -3070 8 1199 22 0 0 0 chr6 80478690 80478712 -69038325 + AT_rich Low_complexity Low_complexity 1 22 0 8 1199 545 266 37 37 chr6 80479089 80479253 -69037784 + RSINE1 SINE B4 2 165 0 8 1199 256 271 35 35 chr6 80479420 80479565 -69037472 + L1MDa LINE L1 5808 5952 -681 8 1199 854 278 19 106 chr6 80479568 80479983 -69037054 - MTE2a LTR MaLR 0 379 1 8 1199 546 16 0 0 chr6 80480031 80480094 -69036943 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1199 349 310 169 26 chr6 80480373 80480562 -69036475 + Tigger5 DNA MER2_type 20 235 -2171 8 1199 202 231 0 0 chr6 80480587 80480626 -69036411 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1199 244 357 41 0 chr6 80480640 80480738 -69036299 - MTE2a LTR MaLR -140 239 138 8 1199 23 54 0 0 chr6 80481293 80481330 -69035707 + AT_rich Low_complexity Low_complexity 1 37 0 8 1199 402 147 0 0 chr6 80481693 80481761 -69035276 + (TTCTCC)n Simple_repeat Simple_repeat 3 70 0 8 1199 228 286 104 28 chr6 80482217 80482361 -69034676 - L2a LINE L2 0 3426 3272 8 1199 241 356 55 39 chr6 80482681 80482862 -69034175 - L2a LINE L2 -552 2867 2684 8 1199 3527 92 12 4 chr6 80483197 80483700 -69033337 - Lx3A LINE L1 0 6981 6475 8 1199 3931 108 2 0 chr6 80483702 80484248 -69032789 - L1_Mur1 LINE L1 0 5886 5340 8 1199 1602 100 37 30 chr6 80484247 80484515 -69032522 + L1_Mur1 LINE L1 5076 5345 -541 8 1199 497 240 84 26 chr6 80484624 80484778 -69032259 - MTD LTR MaLR -20 399 237 8 1199 654 282 60 15 chr6 80485610 80485862 -69031175 - ORR1E LTR MaLR 0 379 98 8 1199 978 155 120 35 chr6 80485862 80486062 -69030975 + URR1A DNA MER1_type 1 217 -9 8 1199 365 248 92 83 chr6 80485864 80486093 -69030944 - CYRA11_Mm Unknown Y-chromosome -233 384 154 8 1199 286 295 0 0 chr6 80486082 80486160 -69030877 - ORR1E LTR MaLR -291 83 6 8 1199 640 241 107 61 chr6 80486664 80486676 -69030361 - B4A SINE B4 -16 276 267 8 1199 288 0 0 0 chr6 80486676 80486708 -69030329 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1199 640 241 107 61 chr6 80486708 80486956 -69030081 - B4A SINE B4 -26 266 4 8 1199 609 311 146 0 chr6 80487592 80487804 -69029233 - MTEb LTR MaLR 0 379 137 8 1199 29 78 0 0 chr6 80488270 80488334 -69028703 + AT_rich Low_complexity Low_complexity 1 64 0 8 1199 558 43 0 0 chr6 80488644 80488713 -69028324 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 8 1199 1055 127 0 6 chr6 80488715 80488889 -69028148 + (GGAA)n Simple_repeat Simple_repeat 1 173 0 8 1199 203 133 0 22 chr6 80490079 80490092 -69026945 + (TAAA)n Simple_repeat Simple_repeat 2 14 0 8 1199 426 348 19 0 chr6 80490092 80490250 -69026787 + RSINE1 SINE B4 1 161 -4 8 1199 203 133 0 22 chr6 80490250 80490282 -69026755 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 8 1199 447 19 0 0 chr6 80490786 80490838 -69026199 + (TC)n Simple_repeat Simple_repeat 2 53 0 8 1199 566 332 7 84 chr6 80491955 80492241 -69024796 + Lx8 LINE L1 6937 7200 -273 8 1199 290 356 70 29 chr6 80492914 80493157 -69023880 - MLT1H-int LTR MaLR -792 617 365 8 1199 24 0 0 0 chr6 80493509 80493533 -69023504 + AT_rich Low_complexity Low_complexity 1 24 0 8 1199 517 268 28 28 chr6 80493829 80493971 -69023066 - B1_Mus1 SINE Alu 0 148 7 8 1199 254 362 20 41 chr6 80494293 80494391 -69022646 + B4A SINE B4 3 98 -194 8 1199 470 95 0 0 chr6 80494409 80494472 -69022565 - B2_Mm2 SINE B2 -131 64 2 8 1199 495 316 121 35 chr6 80494759 80495015 -69022022 + B4A SINE B4 1 278 -14 8 1199 356 59 20 0 chr6 80495712 80495763 -69021274 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1199 405 54 0 0 chr6 80495763 80495819 -69021218 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1199 494 310 69 31 chr6 80495822 80495982 -69021055 - B3A SINE B2 -31 167 2 8 1199 30 0 0 0 chr6 80496101 80496131 -69020906 + AT_rich Low_complexity Low_complexity 1 30 0 8 1199 36 0 0 0 chr6 80496217 80496253 -69020784 + AT_rich Low_complexity Low_complexity 1 36 0 9 1199 297 333 21 0 chr6 80496564 80496660 -69020377 + RSINE1 SINE B4 55 152 -13 9 1199 581 309 119 35 chr6 80497698 80498094 -69018943 - RMER5 LTR ERV1 -73 461 33 9 1199 595 91 41 27 chr6 80498144 80498291 -69018746 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 9 1199 455 107 12 0 chr6 80498296 80498380 -69018657 + (TG)n Simple_repeat Simple_repeat 1 85 0 9 1199 1006 73 6 22 chr6 80498397 80498580 -69018457 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1199 1475 48 0 6 chr6 80498963 80499662 -69017375 + (TAGA)n Simple_repeat Simple_repeat 1 694 0 9 1199 293 280 47 57 chr6 80499874 80499980 -69017057 - PB1D7 SINE Alu 0 120 16 9 1199 180 236 76 89 chr6 80500157 80500236 -69016801 - L3 LINE CR1 -56 4433 4356 1 1199 214 106 21 21 chr6 80500637 80500685 -69016352 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 2 1199 951 62 8 0 chr6 80500874 80501002 -69016035 - B2_Mm1t SINE B2 -58 135 7 3 1199 497 313 41 10 chr6 80501016 80501213 -69015824 - B3 SINE B2 -10 206 4 4 1199 410 295 31 39 chr6 80501714 80501841 -69015196 + LTR33C LTR ERVL 18 143 -486 5 1199 640 301 79 6 chr6 80501866 80502043 -69014994 + B3A SINE B2 1 190 -8 6 1199 1922 219 60 28 chr6 80502411 80502876 -69014161 - RMER13A LTR ERVK 0 860 381 7 1199 428 193 12 0 chr6 80502992 80503075 -69013962 - ORR1A3 LTR MaLR -3 323 240 8 1199 336 254 8 16 chr6 80503115 80503239 -69013798 + L1MA8 LINE L1 6156 6278 -13 9 1199 567 246 7 28 chr6 80503292 80503434 -69013603 - MTD LTR MaLR -14 405 267 1 1199 740 307 50 16 chr6 80503491 80503749 -69013288 - MTD LTR MaLR -151 268 2 1 1199 316 342 144 62 chr6 80506108 80506364 -69010673 + B4A SINE B4 3 279 -13 1 1199 221 159 0 0 chr6 80507185 80507229 -69009808 + A-rich Low_complexity Low_complexity 6 49 0 1 1199 567 344 6 152 chr6 80507237 80507566 -69009471 + B4 SINE B4 2 282 -10 1 1199 414 0 0 0 chr6 80507594 80507640 -69009397 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1199 591 287 82 12 chr6 80508396 80508653 -69008384 + B4A SINE B4 4 278 -14 1 1199 1290 269 29 6 chr6 80509757 80510097 -69006940 - ORR1D2 LTR MaLR -22 348 1 1 1199 573 329 39 0 chr6 80510098 80510253 -69006784 - B3A SINE B2 -34 164 4 1 1199 22 0 0 0 chr6 80511048 80511070 -69005967 + AT_rich Low_complexity Low_complexity 1 22 0 1 1199 767 88 9 0 chr6 80511856 80511969 -69005068 + (TTTCC)n Simple_repeat Simple_repeat 1 114 0 1 1199 681 76 0 0 chr6 80512002 80512094 -69004943 + (TC)n Simple_repeat Simple_repeat 2 93 0 2 1199 366 23 0 0 chr6 80512347 80512390 -69004647 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1199 536 289 0 15 chr6 80512401 80512531 -69004506 - RSINE1 SINE B4 -35 130 3 2 1199 1483 55 5 15 chr6 80512635 80512836 -69004201 + L1Md_T LINE L1 6384 6582 0 2 1199 758 276 27 16 chr6 80512841 80513025 -69004012 + B3 SINE B2 30 215 -1 2 1199 1141 285 72 0 chr6 80513599 80513918 -69003119 + MTEa LTR MaLR 1 342 -37 2 1199 350 102 0 33 chr6 80514693 80514754 -69002283 + (CTA)n Simple_repeat Simple_repeat 1 59 0 2 1199 249 108 0 0 chr6 80514759 80514796 -69002241 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2 1199 561 320 36 3 chr6 80515159 80515359 -69001678 + B3A SINE B2 1 203 -13 2 1199 238 303 92 0 chr6 80515446 80515522 -69001515 - 5S rRNA rRNA 0 121 39 2 1199 532 191 137 14 chr6 80515713 80515835 -69001202 - Lx9 LINE L1 0 7644 7511 3 1199 258 32 0 0 chr6 80515835 80515866 -69001171 + (CATA)n Simple_repeat Simple_repeat 2 32 0 3 1199 532 191 137 14 chr6 80515866 80515955 -69001082 - Lx9 LINE L1 -134 7510 7407 3 1199 227 192 0 0 chr6 80516162 80516214 -69000823 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 3 1199 180 0 0 0 chr6 80518174 80518194 -68998843 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1199 1442 264 73 3 chr6 80518246 80518614 -68998423 - MTD LTR MaLR -25 394 1 3 1199 490 239 36 29 chr6 80519189 80519327 -68997710 + RSINE1 SINE B4 2 140 -25 3 1199 317 214 56 96 chr6 80519886 80520023 -68997014 + B1_Mur4 SINE Alu 4 125 -24 3 1199 3188 103 140 11 chr6 80520652 80521174 -68995863 - Lx2 LINE L1 -332 6665 6077 3 1199 1728 111 64 48 chr6 80521179 80521491 -68995546 + Lx2 LINE L1 6681 6997 0 3 1199 1499 146 110 73 chr6 80521562 80521879 -68995158 + ORR1A4 LTR MaLR 1 329 0 3 1199 345 24 0 0 chr6 80522092 80522134 -68994903 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1199 580 352 53 43 chr6 80522167 80522449 -68994588 - B4 SINE B4 -4 288 4 4 1199 486 305 147 48 chr6 80522756 80523007 -68994030 + B4A SINE B4 9 284 -8 4 1199 1404 326 48 25 chr6 80523199 80523887 -68993150 - Lx9 LINE L1 -594 7050 6347 4 1199 441 76 0 0 chr6 80523888 80523954 -68993083 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1199 777 282 40 36 chr6 80524042 80524431 -68992606 - Lx9 LINE L1 -944 6064 5678 4 1199 295 119 30 0 chr6 80527141 80527208 -68989829 + (CAAAAA)n Simple_repeat Simple_repeat 3 71 0 4 1199 21 57 0 0 chr6 80527636 80527671 -68989366 + AT_rich Low_complexity Low_complexity 1 35 0 4 1199 603 314 7 0 chr6 80527714 80527854 -68989183 - RSINE1 SINE B4 -22 143 3 4 1199 447 19 0 0 chr6 80527892 80527944 -68989093 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1199 315 0 0 0 chr6 80527944 80527978 -68989059 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1199 283 197 0 101 chr6 80528019 80528098 -68988939 - B3A SINE B2 -120 78 8 4 1199 504 203 8 15 chr6 80528628 80528758 -68988279 - Lx4A LINE L1 0 7058 6930 5 1199 2756 140 8 3 chr6 80528758 80529235 -68987802 - Lx4A LINE L1 -1030 6028 5545 5 1199 22 0 0 0 chr6 80529745 80529767 -68987270 + AT_rich Low_complexity Low_complexity 1 22 0 5 1199 3787 60 4 8 chr6 80530110 80530599 -68986438 + L1Md_F2 LINE L1 6094 6580 -2 5 1199 25 31 0 0 chr6 80530599 80530631 -68986406 + AT_rich Low_complexity Low_complexity 1 32 0 5 1199 1118 175 24 24 chr6 80530839 80531044 -68985993 - MTC LTR MaLR 0 421 217 5 1199 1007 230 65 35 chr6 80531255 80531516 -68985521 - MTD LTR MaLR -14 405 137 5 1199 447 19 0 0 chr6 80531522 80531574 -68985463 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1199 336 256 56 0 chr6 80531637 80531727 -68985310 - MTD LTR MaLR -279 140 46 5 1199 873 240 5 14 chr6 80533105 80533312 -68983725 + B3 SINE B2 2 206 -10 5 1199 5873 92 13 12 chr6 80533318 80534868 -68982169 + L1VL4 LINE L1 230 1785 -1774 5 1199 355 352 39 16 chr6 80535278 80535460 -68981577 - RMER15 LTR ERVL -7 568 383 5 1199 233 228 0 0 chr6 80535684 80535741 -68981296 + T-rich Low_complexity Low_complexity 1 57 0 6 1199 3733 102 7 4 chr6 80535744 80536285 -68980752 - L1_Mus2 LINE L1 0 6566 6024 6 1199 241 371 162 14 chr6 80536970 80537112 -68979925 - B3A SINE B2 0 198 36 6 1199 581 308 46 86 chr6 80538333 80538635 -68978402 - B4A SINE B4 0 292 3 6 1199 737 144 0 6 chr6 80540352 80540513 -68976524 + (GA)n Simple_repeat Simple_repeat 1 160 0 6 1199 676 313 82 34 chr6 80541038 80541306 -68975731 + B4A SINE B4 10 290 -2 6 1199 653 268 53 10 chr6 80541798 80542005 -68975032 + B3 SINE B2 1 216 0 6 1199 410 342 13 40 chr6 80542052 80542280 -68974757 - ID_B1 SINE B4 -2 222 1 6 1199 23 33 0 0 chr6 80542606 80542636 -68974401 + AT_rich Low_complexity Low_complexity 1 30 0 6 1199 25 51 0 0 chr6 80543118 80543157 -68973880 + AT_rich Low_complexity Low_complexity 1 39 0 6 1199 318 182 114 25 chr6 80543412 80543491 -68973546 + RMER6C LTR ERVK 580 665 -25 7 1199 1829 167 117 73 chr6 80543632 80544109 -68972928 - RMER6C LTR ERVK -192 498 1 7 1199 22 0 0 0 chr6 80544546 80544568 -68972469 + AT_rich Low_complexity Low_complexity 1 22 0 7 1199 1041 305 73 51 chr6 80545132 80545626 -68971411 - Lx8 LINE L1 -1 7472 6968 7 1199 451 240 9 57 chr6 80545654 80545760 -68971277 - RMER20B LTR ERVK -471 156 56 7 1199 520 326 49 11 chr6 80546146 80546329 -68970708 + MER58A DNA MER1_type 7 196 -28 7 1199 296 305 62 98 chr6 80546556 80546749 -68970288 - MLT1A0 LTR MaLR -80 285 100 7 1199 21 36 0 0 chr6 80546985 80547013 -68970024 + AT_rich Low_complexity Low_complexity 1 28 0 7 1199 1120 103 5 5 chr6 80547142 80547359 -68969678 + (TG)n Simple_repeat Simple_repeat 1 217 0 7 1199 592 303 28 14 chr6 80547360 80547504 -68969533 - RSINE1 SINE B4 -17 148 3 7 1199 309 352 86 0 chr6 80547931 80548036 -68969001 - B3A SINE B2 -84 114 1 8 1199 262 365 42 29 chr6 80548309 80548761 -68968276 - L1M3de LINE L1 -4709 1944 1487 8 1199 243 191 0 0 chr6 80549105 80549173 -68967864 + T-rich Low_complexity Low_complexity 1 68 0 8 1199 1430 241 99 41 chr6 80549271 80549664 -68967373 - MTD LTR MaLR 0 419 4 8 1199 338 0 0 23 chr6 80549674 80549717 -68967320 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 8 1199 31 82 0 0 chr6 80550474 80550547 -68966490 + AT_rich Low_complexity Low_complexity 1 73 0 8 1199 1187 159 87 72 chr6 80550841 80551105 -68965932 - Lx LINE L1 -1 6653 6386 8 1199 518 0 16 0 chr6 80551119 80551181 -68965856 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 8 1199 253 333 39 0 chr6 80552068 80552170 -68964867 - Tigger10 DNA Tigger -1027 816 711 8 1199 871 191 49 66 chr6 80553046 80553570 -68963467 - RMER17C LTR ERVK 0 410 1 8 1199 267 54 0 0 chr6 80553776 80553813 -68963224 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 9 1199 329 311 16 48 chr6 80553825 80553950 -68963087 - B3A SINE B2 -45 153 33 9 1199 527 330 85 5 chr6 80554009 80554198 -68962839 + B3 SINE B2 2 205 -11 9 1199 4928 75 4 20 chr6 80554231 80554913 -68962124 - L1_Mus2 LINE L1 0 6566 5896 9 1199 285 93 0 0 chr6 80554913 80554956 -68962081 + L1_Mus2 LINE L1 5863 5905 -733 9 1199 820 162 54 0 chr6 80554981 80555129 -68961908 + B2_Mm2 SINE B2 1 156 -39 9 1199 38 51 0 0 chr6 80555308 80555367 -68961670 + AT_rich Low_complexity Low_complexity 1 59 0 9 1199 180 216 0 0 chr6 80555384 80555435 -68961602 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1199 382 323 160 21 chr6 80555465 80555702 -68961335 - B4 SINE B4 -19 273 4 9 1199 578 214 77 0 chr6 80557630 80557747 -68959290 + B1_Mus1 SINE Alu 1 126 -22 9 1199 323 60 0 20 chr6 80557747 80557798 -68959239 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 1199 490 325 37 25 chr6 80558665 80558826 -68958211 + B3 SINE B2 1 163 -53 1 1199 252 59 0 0 chr6 80558842 80558876 -68958161 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1199 4931 141 61 14 chr6 80558887 80559631 -68957406 + Lx LINE L1 5755 6535 -119 1 1199 282 56 0 0 chr6 80559631 80559667 -68957370 + (TGGG)n Simple_repeat Simple_repeat 2 37 0 1 1199 4931 141 61 14 chr6 80559667 80559780 -68957257 + Lx LINE L1 6536 6652 -2 1 1199 333 175 0 0 chr6 80559793 80559850 -68957187 + ORR1C1 LTR MaLR 322 378 0 1 1199 243 0 0 0 chr6 80559954 80559981 -68957056 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1199 284 83 21 0 chr6 80559987 80560035 -68957002 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1199 600 14 0 0 chr6 80560036 80560105 -68956932 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1199 591 290 32 42 chr6 80560944 80561160 -68955877 + B3 SINE B2 3 216 0 1 1199 356 337 63 59 chr6 80561181 80561468 -68955569 + B4A SINE B4 5 292 0 1 1199 27 0 0 0 chr6 80561698 80561725 -68955312 + AT_rich Low_complexity Low_complexity 1 27 0 1 1199 3374 134 23 2 chr6 80561725 80562257 -68954780 - Lx2 LINE L1 -1 6996 6454 1 1199 292 292 42 63 chr6 80562475 80562570 -68954467 + RSINE1 SINE B4 73 165 0 1 1199 21 71 0 0 chr6 80563115 80563157 -68953880 + AT_rich Low_complexity Low_complexity 1 42 0 1 1199 234 342 92 15 chr6 80563760 80563956 -68953081 - Lx9 LINE L1 -272 7372 7162 1 1199 319 358 37 7 chr6 80564230 80564365 -68952672 - RMER15 LTR ERVL -92 483 345 1 1199 429 36 0 0 chr6 80565113 80565168 -68951869 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1199 448 292 109 50 chr6 80565168 80565370 -68951667 - ID_B1 SINE B4 -10 214 1 1 1199 1682 67 38 0 chr6 80566241 80566481 -68950556 + L1_Mus1 LINE L1 6082 6330 -237 1 1199 3160 39 0 0 chr6 80566481 80566863 -68950174 + L1Md_T LINE L1 6200 6581 -1 1 1199 1834 67 4 4 chr6 80566865 80567106 -68949931 + L1_Mus1 LINE L1 6324 6564 -3 1 1199 661 274 31 10 chr6 80567948 80568140 -68948897 + B3A SINE B2 3 198 0 1 1199 225 0 0 0 chr6 80568566 80568591 -68948446 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1199 312 27 0 0 chr6 80568591 80568627 -68948410 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1199 1032 72 0 0 chr6 80568964 80569102 -68947935 + (TTCC)n Simple_repeat Simple_repeat 4 141 0 1 1199 262 318 158 131 chr6 80569177 80569398 -68947639 + B4A SINE B4 2 228 -64 1 1199 345 109 0 0 chr6 80570115 80570179 -68946858 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1199 941 234 47 9 chr6 80571317 80571528 -68945509 - RLTR26 LTR ERVK 0 642 424 1 1199 632 242 43 19 chr6 80571632 80571843 -68945194 - B3 SINE B2 0 216 1 1 1199 521 324 5 75 chr6 80572039 80572239 -68944798 + B3A SINE B2 5 190 -8 1 1199 290 244 11 23 chr6 80572248 80572336 -68944701 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1199 243 0 0 0 chr6 80573376 80573403 -68943634 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1199 459 317 97 85 chr6 80573616 80573702 -68943335 - B4A SINE B4 0 292 211 1 1199 1995 214 32 2 chr6 80573702 80574110 -68942927 - MTC LTR MaLR -1 420 1 1 1199 459 317 97 85 chr6 80574110 80574271 -68942766 - B4A SINE B4 -82 210 42 1 1199 423 164 74 98 chr6 80574491 80574613 -68942424 + MT2B LTR ERVL 147 265 -336 1 1199 934 79 0 0 chr6 80574511 80574637 -68942400 + B1_Mus2 SINE Alu 12 137 -10 1 1199 277 24 23 23 chr6 80574637 80574680 -68942357 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1199 300 333 0 80 chr6 80574974 80575124 -68941913 + RSINE1 SINE B4 28 165 0 1 1199 23 33 0 0 chr6 80575124 80575154 -68941883 + AT_rich Low_complexity Low_complexity 1 30 0 1 1199 182 250 0 0 chr6 80575902 80575942 -68941095 - L2c LINE L2 -9 3378 3339 1 1199 220 372 17 42 chr6 80576067 80576185 -68940852 + PB1D10 SINE Alu 3 117 0 1 1199 564 271 76 6 chr6 80576197 80576368 -68940669 - MTE2b LTR MaLR 0 379 197 1 1199 329 153 24 0 chr6 80576371 80576456 -68940581 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 1 1199 682 269 31 49 chr6 80576471 80576694 -68940343 - MTE2b LTR MaLR -159 220 2 1 1199 365 289 55 0 chr6 80579067 80579195 -68937842 - Tigger9b DNA MER2_type -142 482 348 1 1199 6588 191 43 18 chr6 80579355 80580760 -68936277 - Lx5 LINE L1 -7 7043 5603 1 1199 1513 224 36 8 chr6 80580850 80581210 -68935827 + ORR1D1 LTR MaLR 5 374 0 1 1199 192 97 0 0 chr6 80581677 80581708 -68935329 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1199 495 0 0 0 chr6 80581869 80581924 -68935113 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1199 376 339 99 78 chr6 80582311 80582593 -68934444 + B4 SINE B4 4 291 -1 1 1199 342 0 0 0 chr6 80582622 80582660 -68934377 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1199 429 321 14 28 chr6 80583967 80584111 -68932926 + B3A SINE B2 1 142 -56 1 1199 576 350 37 3 chr6 80584356 80584580 -68932457 + B4A SINE B4 5 238 -54 1 1199 285 202 10 101 chr6 80584624 80584685 -68932352 + PB1D10 SINE Alu 28 81 -36 1 1199 423 0 0 0 chr6 80584685 80584732 -68932305 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1199 285 202 10 101 chr6 80584732 80584769 -68932268 + PB1D10 SINE Alu 82 117 0 1 1199 1559 16 0 0 chr6 80584769 80584953 -68932084 + L1Md_A LINE L1 5403 5586 -297 1 1199 8512 30 0 0 chr6 80584953 80585948 -68931089 + L1Md_A LINE L1 5587 6581 -1 1 1199 584 254 50 7 chr6 80587424 80587604 -68929433 - MTD LTR MaLR 0 419 196 1 1199 3408 39 149 3 chr6 80587623 80588276 -68928761 - L1Md_F3 LINE L1 -1 6583 5836 1 1199 489 304 47 47 chr6 80588276 80588466 -68928571 - MTD LTR MaLR -224 195 6 1 1199 214 237 0 0 chr6 80588649 80588687 -68928350 + polypurine Low_complexity Low_complexity 4 41 0 1 1199 342 0 0 0 chr6 80588730 80588768 -68928269 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1199 283 228 94 26 chr6 80589074 80589191 -68927846 - L1M2 LINE L1 -458 5842 5718 1 1199 7708 46 1 2 chr6 80589309 80590745 -68926292 - L1Md_F2 LINE L1 -1 6581 5147 1 1199 243 364 50 17 chr6 80590748 80590868 -68926169 + B2_Mm2 SINE B2 1 124 -71 1 1199 27 29 0 0 chr6 80592079 80592113 -68924924 + AT_rich Low_complexity Low_complexity 1 34 0 1 1199 1507 241 60 89 chr6 80592150 80592668 -68924369 - RLTR11A LTR ERVK 0 528 26 1 1199 6132 176 41 4 chr6 80592699 80594012 -68923025 - MYSERV16_I-int LTR ERVK -1 2325 964 1 1199 345 75 0 0 chr6 80594253 80594306 -68922731 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1199 349 294 36 82 chr6 80596525 80596744 -68920293 + RLTR42-int LTR ERVK 5195 5403 -119 1 1199 252 0 0 0 chr6 80597695 80597723 -68919314 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 1199 23 33 0 0 chr6 80598329 80598359 -68918678 + AT_rich Low_complexity Low_complexity 1 30 0 1 1199 242 324 9 18 chr6 80598448 80598558 -68918479 + (TG)n Simple_repeat Simple_repeat 1 109 0 1 1199 405 0 0 0 chr6 80598582 80598627 -68918410 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1199 1342 222 16 72 chr6 80599159 80599547 -68917490 - Lx2B LINE L1 -5 6995 6630 1 1199 2074 92 3 69 chr6 80600566 80600915 -68916122 - IAPLTR1a_Mm LTR ERVK -11 326 1 1 1199 55362 11 5 2 chr6 80600915 80607382 -68909655 - IAPEz-int LTR ERVK 0 6481 1 1 1199 2093 92 3 69 chr6 80607383 80607732 -68909305 - IAPLTR1a_Mm LTR ERVK -11 326 1 1 1199 258 56 0 0 chr6 80607852 80607888 -68909149 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1199 262 359 122 56 chr6 80608213 80608517 -68908520 + MLT1D LTR MaLR 160 483 -22 1 1199 734 249 0 0 chr6 80608850 80609015 -68908022 - Lx7 LINE L1 -1922 5774 5610 1 1200 257 256 64 6 chr6 80609460 80609617 -68907420 - RMER17C LTR ERVK -141 269 104 1 1200 223 311 123 25 chr6 80609630 80609752 -68907285 - RSINE1 SINE B4 -20 145 12 1 1200 21 0 0 0 chr6 80610097 80610118 -68906919 + AT_rich Low_complexity Low_complexity 1 21 0 1 1200 22 0 0 0 chr6 80610699 80610721 -68906316 + AT_rich Low_complexity Low_complexity 1 22 0 1 1200 451 291 36 90 chr6 80610732 80610898 -68906139 - RSINE1 SINE B4 0 165 9 1 1200 219 326 130 0 chr6 80611452 80611544 -68905493 + PB1 SINE Alu 22 125 -2 1 1200 210 306 70 26 chr6 80611723 80611837 -68905200 + B1F SINE Alu 23 141 -8 1 1200 450 0 0 0 chr6 80612554 80612604 -68904433 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1200 223 345 10 149 chr6 80613287 80613481 -68903556 + B4A SINE B4 3 169 -123 1 1200 432 77 0 0 chr6 80613638 80613703 -68903334 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1200 567 0 0 0 chr6 80614819 80614882 -68902155 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1200 596 297 28 6 chr6 80614883 80615059 -68901978 + B3 SINE B2 31 210 -6 1 1200 266 239 103 71 chr6 80615659 80615785 -68901252 - YREP_Mm Unknown Unknown -1470 342 213 1 1200 334 296 72 50 chr6 80615677 80615816 -68901221 + ID_B1 SINE B4 79 220 -4 1 1200 421 371 26 7 chr6 80615959 80616111 -68900926 + RSINE1 SINE B4 10 164 -1 1 1200 3305 77 7 7 chr6 80616453 80616898 -68900139 - L1_Mus1 LINE L1 -1 6566 6122 1 1200 417 20 0 0 chr6 80617636 80617686 -68899351 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1200 450 54 40 0 chr6 80617813 80617887 -68899150 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 1200 24 0 0 0 chr6 80617955 80617979 -68899058 + AT_rich Low_complexity Low_complexity 1 24 0 1 1200 291 164 0 0 chr6 80618100 80618161 -68898876 + CT-rich Low_complexity Low_complexity 2 62 0 1 1200 561 312 33 22 chr6 80618228 80618408 -68898629 - B4A SINE B4 -14 278 97 1 1200 481 310 0 0 chr6 80618612 80618725 -68898312 + RSINE1 SINE B4 2 114 -51 1 1200 355 85 61 41 chr6 80618739 80618837 -68898200 + (CAGAGA)n Simple_repeat Simple_repeat 3 102 0 1 1200 200 176 0 0 chr6 80618864 80618898 -68898139 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1200 726 62 0 0 chr6 80618898 80618994 -68898043 + (GA)n Simple_repeat Simple_repeat 2 97 0 1 1200 296 165 44 0 chr6 80619006 80619097 -68897940 + GA-rich Low_complexity Low_complexity 2 96 0 1 1200 447 283 53 9 chr6 80620201 80620315 -68896722 - RSINE1 SINE B4 -44 121 3 1 1200 1475 185 58 74 chr6 80620342 80620722 -68896315 + ORR1D1 LTR MaLR 1 374 0 2 1200 1014 256 8 4 chr6 80621057 80621296 -68895741 - Lx5 LINE L1 -26 7434 7195 2 1200 889 24 24 0 chr6 80621284 80621407 -68895630 + L1Md_F2 LINE L1 6445 6570 -12 2 1200 423 0 0 0 chr6 80621425 80621472 -68895565 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1200 1084 301 103 40 chr6 80621489 80622240 -68894797 - Lx5 LINE L1 -285 6765 5917 2 1200 342 0 0 0 chr6 80622248 80622286 -68894751 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 2 1200 321 383 47 11 chr6 80622287 80622477 -68894560 - Lx5 LINE L1 -4 7046 6850 2 1200 634 125 71 9 chr6 80622475 80622588 -68894449 + L1_Mur2 LINE L1 3568 3687 -2190 2 1200 794 275 23 141 chr6 80622588 80623015 -68894022 + MTE2a LTR MaLR 3 379 0 2 1200 27 29 0 0 chr6 80623559 80623593 -68893444 + AT_rich Low_complexity Low_complexity 1 34 0 2 1200 271 96 19 19 chr6 80623705 80623758 -68893279 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1200 382 338 61 20 chr6 80623762 80623910 -68893127 - RSINE1 SINE B4 -9 156 3 2 1200 325 320 92 22 chr6 80624483 80624668 -68892369 - MER2 DNA MER2_type -3 342 145 2 1200 270 0 0 0 chr6 80625002 80625032 -68892005 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1200 6062 121 46 17 chr6 80625033 80625143 -68891894 - Lx LINE L1 -17 6637 6521 2 1200 186 43 0 0 chr6 80625143 80625166 -68891871 + (CCCA)n Simple_repeat Simple_repeat 2 24 0 2 1200 6062 121 46 17 chr6 80625166 80626039 -68890998 - Lx LINE L1 -134 6520 5627 2 1200 3907 158 0 1 chr6 80626038 80626685 -68890352 + Lx LINE L1 4971 5616 -267 2 1200 644 265 57 33 chr6 80626801 80627012 -68890025 - B3 SINE B2 0 216 1 2 1200 259 230 0 63 chr6 80627193 80627272 -68889765 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 2 1200 1789 168 54 57 chr6 80627288 80627641 -68889396 - ORR1B2 LTR MaLR -2 365 14 2 1200 28 79 0 0 chr6 80627700 80627763 -68889274 + AT_rich Low_complexity Low_complexity 1 63 0 2 1200 22 0 0 0 chr6 80628204 80628226 -68888811 + AT_rich Low_complexity Low_complexity 1 22 0 2 1200 396 263 37 8 chr6 80630047 80630181 -68886856 + CT-rich Low_complexity Low_complexity 5 142 0 2 1200 21 0 0 0 chr6 80630713 80630734 -68886303 + AT_rich Low_complexity Low_complexity 1 21 0 2 1200 183 80 0 0 chr6 80630790 80630815 -68886222 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1200 564 53 0 0 chr6 80630915 80630991 -68886046 + (TA)n Simple_repeat Simple_repeat 1 76 0 2 1200 835 275 132 39 chr6 80631027 80631337 -68885700 - Lx8 LINE L1 -190 7283 6945 2 1200 186 43 0 0 chr6 80631663 80631686 -68885351 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1200 552 56 0 0 chr6 80631688 80631760 -68885277 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1200 220 314 42 0 chr6 80632520 80632647 -68884390 + (TATATG)n Simple_repeat Simple_repeat 1 132 0 2 1200 216 229 0 20 chr6 80632851 80632900 -68884137 + CT-rich Low_complexity Low_complexity 4 51 0 2 1200 468 39 25 25 chr6 80632967 80633047 -68883990 + (GTTTG)n Simple_repeat Simple_repeat 1 80 0 2 1200 355 316 73 36 chr6 80633049 80633351 -68883686 - L1MA8 LINE L1 -415 5888 5560 2 1200 212 0 36 0 chr6 80633611 80633639 -68883398 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1200 988 153 0 0 chr6 80633835 80633998 -68883039 - ORR1A4 LTR MaLR -23 306 144 2 1200 6508 58 26 9 chr6 80633998 80634855 -68882182 - L1Md_F2 LINE L1 -5 6577 5707 2 1200 7026 104 22 18 chr6 80634853 80635830 -68881207 + Lx3_Mus LINE L1 4818 5808 -75 2 1200 3439 91 32 2 chr6 80635830 80636326 -68880711 - Lx3_Mus LINE L1 0 7009 6499 2 1200 7026 110 30 19 chr6 80636326 80636437 -68880600 + Lx3_Mus LINE L1 5800 5910 -1099 2 1200 270 21 64 0 chr6 80636437 80636484 -68880553 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 1200 207 0 0 0 chr6 80636489 80636512 -68880525 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 2 1200 4785 130 57 23 chr6 80636512 80637055 -68879982 + Lx3_Mus LINE L1 5916 6486 -523 2 1200 438 331 14 7 chr6 80637138 80637284 -68879753 - RSINE1 SINE B4 0 165 19 2 1200 333 0 0 0 chr6 80638384 80638421 -68878616 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1200 569 277 14 49 chr6 80638427 80638571 -68878466 - RSINE1 SINE B4 -21 144 6 2 1200 462 245 12 131 chr6 80638780 80638940 -68878097 + B1_Mur1 SINE Alu 8 148 -1 2 1200 885 93 0 0 chr6 80639163 80639292 -68877745 + (TTTC)n Simple_repeat Simple_repeat 1 129 0 2 1200 234 305 0 0 chr6 80639510 80639569 -68877468 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1200 196 312 140 0 chr6 80639772 80639865 -68877172 + MIR SINE MIR 43 148 -60 2 1200 250 288 15 0 chr6 80640728 80640794 -68876243 - RSINE1 SINE B4 -96 69 3 2 1200 2128 247 47 12 chr6 80640866 80641468 -68875569 - RCHARR1 DNA MER1_type -66 908 286 2 1200 295 318 0 83 chr6 80641510 80641606 -68875431 - RCHARR1 DNA MER1_type -805 169 82 2 1200 607 276 5 62 chr6 80641611 80641804 -68875233 + B3A SINE B2 1 182 -16 2 1200 306 289 60 0 chr6 80641814 80641897 -68875140 - RCHARR1 DNA MER1_type -881 93 6 2 1200 975 9 9 0 chr6 80642700 80642812 -68874225 - L1Md_F3 LINE L1 -234 6350 6238 2 1200 1635 50 27 9 chr6 80642812 80643034 -68874003 + L1Md_F3 LINE L1 6359 6584 0 2 1200 962 316 74 14 chr6 80645062 80645415 -68871622 - MTD LTR MaLR -36 383 10 2 1200 679 136 0 0 chr6 80645463 80645566 -68871471 + B1_Mus2 SINE Alu 13 115 -32 2 1200 598 315 25 0 chr6 80645735 80645935 -68871102 + B3 SINE B2 2 206 -10 2 1200 1614 217 71 10 chr6 80646275 80646670 -68870367 + MTC LTR MaLR 3 421 0 2 1200 837 212 108 11 chr6 80646676 80646947 -68870090 + MTC-int LTR MaLR 383 785 -473 2 1200 228 23 43 43 chr6 80646947 80646993 -68870044 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1200 522 312 47 26 chr6 80647329 80647520 -68869517 + B3A SINE B2 3 197 -1 2 1200 1260 302 38 18 chr6 80648896 80649293 -68867744 - MTD LTR MaLR -14 405 1 2 1200 378 0 0 0 chr6 80650104 80650146 -68866891 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1200 249 292 164 30 chr6 80650428 80650562 -68866475 - MLT1E1A LTR MaLR -2 678 527 2 1200 384 261 62 78 chr6 80650571 80650700 -68866337 + ID_B1 SINE B4 82 208 -16 2 1200 503 203 8 63 chr6 80651429 80651555 -68865482 + PB1D9 SINE Alu 2 120 0 2 1200 469 305 45 13 chr6 80651595 80651751 -68865286 - RSINE1 SINE B4 -3 162 2 2 1200 391 278 29 12 chr6 80652843 80653093 -68863944 + CT-rich Low_complexity Low_complexity 1 254 0 2 1200 228 333 39 10 chr6 80653465 80653568 -68863469 + AmnSINE1 SINE SINE 276 381 -194 2 1200 335 298 135 82 chr6 80654230 80654511 -68862526 + ORR1E LTR MaLR 62 357 -2 2 1200 297 75 0 0 chr6 80655950 80655990 -68861047 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 2 1200 411 113 0 0 chr6 80657156 80657227 -68859810 - L1_Mus3 LINE L1 -1 6637 6567 2 1200 198 0 0 0 chr6 80657282 80657304 -68859733 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1200 414 0 0 0 chr6 80657304 80657349 -68859688 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1200 1682 55 0 5 chr6 80657834 80658053 -68858984 - L1Md_F3 LINE L1 -2 6582 6365 2 1200 252 0 0 0 chr6 80658476 80658504 -68858533 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1200 804 295 115 6 chr6 80658729 80658879 -68858158 - ORR1E LTR MaLR -2 357 203 2 1200 537 68 0 0 chr6 80658879 80658953 -68858084 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1200 804 295 115 6 chr6 80658953 80659123 -68857914 - ORR1E LTR MaLR -157 202 4 2 1200 335 323 107 48 chr6 80660088 80660338 -68856699 + B4 SINE B4 5 269 -23 2 1200 219 69 0 0 chr6 80660383 80660412 -68856625 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1200 657 342 20 5 chr6 80660445 80660645 -68856392 - ID_B1 SINE B4 -20 204 2 2 1200 2234 144 24 80 chr6 80661026 80661450 -68855587 - RLTR9D LTR ERVK -3 400 1 2 1200 7214 69 35 1 chr6 80661466 80662994 -68854043 + L1_Mus2 LINE L1 4987 6566 0 2 1200 1802 158 119 51 chr6 80663437 80663467 -68853570 + BGLII_B LTR ERVK 1 22 -419 2 1200 3698 135 42 8 chr6 80663467 80664093 -68852944 - Lx2 LINE L1 0 6997 6351 2 1200 1802 158 119 51 chr6 80664093 80664475 -68852562 + BGLII_B LTR ERVK 23 441 0 2 1200 281 40 60 0 chr6 80664796 80664846 -68852191 + L1Md_F2 LINE L1 6529 6581 -1 2 1200 288 0 0 0 chr6 80664984 80665016 -68852021 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1200 1259 79 6 0 chr6 80665016 80665193 -68851844 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 2 1200 264 30 0 0 chr6 80665193 80665226 -68851811 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1200 266 181 8 72 chr6 80666638 80666763 -68850274 + GA-rich Low_complexity Low_complexity 5 121 0 2 1200 2601 138 28 34 chr6 80667072 80667537 -68849500 + Lx2 LINE L1 6535 6996 -1 2 1200 240 35 0 0 chr6 80667611 80667640 -68849397 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1200 2832 79 13 5 chr6 80668735 80669131 -68847906 - MTB LTR MaLR 0 400 2 2 1200 252 368 0 26 chr6 80670118 80670235 -68846802 + L2a LINE L2 3313 3426 0 2 1200 288 282 132 53 chr6 80670439 80670555 -68846482 - Lx8 LINE L1 -2 7471 7349 2 1200 330 80 0 0 chr6 80670555 80670605 -68846432 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1200 288 282 132 53 chr6 80670605 80670716 -68846321 - Lx8 LINE L1 -125 7348 7226 2 1200 214 169 15 30 chr6 80670735 80670802 -68846235 + (CATTG)n Simple_repeat Simple_repeat 2 67 0 2 1200 716 275 25 5 chr6 80671580 80671781 -68845256 + B3 SINE B2 2 206 -10 2 1200 207 0 0 0 chr6 80672010 80672033 -68845004 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1200 438 148 0 0 chr6 80672691 80672792 -68844245 + (TC)n Simple_repeat Simple_repeat 2 102 0 2 1200 315 0 0 0 chr6 80672793 80672828 -68844209 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1200 240 35 0 0 chr6 80672828 80672856 -68844181 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1200 338 234 35 83 chr6 80673127 80673283 -68843754 + B2_Mm2 SINE B2 2 172 -26 2 1200 430 292 143 58 chr6 80673290 80673409 -68843628 + B4 SINE B4 63 204 -88 2 1200 1708 196 70 18 chr6 80673409 80673454 -68843583 - MTC LTR MaLR 0 421 371 2 1200 225 0 0 0 chr6 80673454 80673479 -68843558 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1200 1708 196 70 18 chr6 80673479 80673833 -68843204 - MTC LTR MaLR -51 370 1 2 1200 430 292 143 58 chr6 80673833 80673902 -68843135 + B4 SINE B4 205 266 -26 2 1200 288 0 0 0 chr6 80674580 80674612 -68842425 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 3 1200 508 292 71 154 chr6 80675718 80676127 -68840910 - MTD LTR MaLR -39 380 6 3 1200 239 93 0 23 chr6 80676150 80676194 -68840843 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 3 1200 491 31 15 0 chr6 80677687 80677752 -68839285 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 3 1200 27 29 0 0 chr6 80677987 80678021 -68839016 + AT_rich Low_complexity Low_complexity 1 34 0 3 1200 1114 240 153 40 chr6 80678195 80678547 -68838490 + MTD LTR MaLR 5 396 -23 3 1200 413 280 141 59 chr6 80679297 80679567 -68837470 - B4A SINE B4 0 292 1 3 1200 26 0 0 0 chr6 80679576 80679602 -68837435 + AT_rich Low_complexity Low_complexity 1 26 0 3 1200 1202 57 17 6 chr6 80680088 80680265 -68836772 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 1200 285 98 0 0 chr6 80680266 80680307 -68836730 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1200 441 54 0 0 chr6 80681316 80681372 -68835665 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1200 623 309 20 0 chr6 80681373 80681522 -68835515 - B3A SINE B2 -46 152 1 3 1200 1316 55 0 11 chr6 80681538 80681721 -68835316 - L1Md_F2 LINE L1 0 6582 6402 3 1200 343 332 158 12 chr6 80681858 80682099 -68834938 - MLT2B1 LTR ERVL -232 288 13 3 1200 450 348 11 0 chr6 80684314 80684492 -68832545 + B3A SINE B2 1 180 -18 3 1200 189 0 0 0 chr6 80685556 80685577 -68831460 + (TTGTG)n Simple_repeat Simple_repeat 4 24 0 3 1200 1243 273 12 19 chr6 80685596 80686018 -68831019 - MTD LTR MaLR 0 419 1 3 1200 423 0 0 0 chr6 80686783 80686830 -68830207 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1200 198 0 0 0 chr6 80686830 80686851 -68830186 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1200 787 264 60 88 chr6 80687544 80687942 -68829095 - RCHARR1 DNA MER1_type -2 972 586 3 1200 1052 273 94 15 chr6 80687963 80688062 -68828975 + Lx9 LINE L1 7211 7321 -323 3 1200 468 81 0 0 chr6 80688062 80688136 -68828901 + (CAAAC)n Simple_repeat Simple_repeat 3 76 0 3 1200 1052 273 94 15 chr6 80688136 80688438 -68828599 + Lx9 LINE L1 7322 7644 0 3 1200 869 270 73 18 chr6 80688446 80688732 -68828305 - RCHARR1 DNA MER1_type -432 542 241 3 1200 433 312 23 15 chr6 80688722 80688852 -68828185 - MTE2a LTR MaLR -179 200 70 3 1200 572 281 0 0 chr6 80689041 80689180 -68827857 + B1_Mur1 SINE Alu 3 141 -8 3 1200 252 339 17 17 chr6 80689848 80689965 -68827072 + L2 LINE L2 2276 2392 -1027 3 1200 335 209 16 186 chr6 80690192 80690321 -68826716 - MTE2a LTR MaLR -262 117 11 3 1200 349 339 68 0 chr6 80690318 80690436 -68826601 + B3A SINE B2 40 165 -33 3 1200 644 303 26 132 chr6 80690514 80690780 -68826257 + MTE2a LTR MaLR 103 340 -39 3 1200 22 0 0 0 chr6 80690809 80690831 -68826206 + AT_rich Low_complexity Low_complexity 1 22 0 3 1200 288 306 19 0 chr6 80691020 80691128 -68825909 + (TATG)n Simple_repeat Simple_repeat 2 111 0 3 1200 384 59 0 0 chr6 80692787 80692838 -68824199 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1200 589 255 21 0 chr6 80692857 80692998 -68824039 - B1_Mus2 SINE Alu -2 145 2 3 1200 427 345 82 26 chr6 80693095 80693363 -68823674 - B4A SINE B4 -8 284 2 3 1200 186 174 0 0 chr6 80693486 80693532 -68823505 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1200 865 251 33 33 chr6 80694335 80694549 -68822488 + B3 SINE B2 3 216 0 3 1200 596 306 124 73 chr6 80694727 80695083 -68821954 - MTE2a LTR MaLR -5 374 1 3 1200 486 0 0 0 chr6 80695086 80695140 -68821897 + (TATG)n Simple_repeat Simple_repeat 2 55 0 3 1200 5334 31 3 2 chr6 80695868 80696542 -68820495 - L1Md_F3 LINE L1 0 6584 5931 3 1200 1845 267 0 46 chr6 80697433 80697872 -68819165 - Lx5 LINE L1 -20 7030 6612 3 1200 396 0 0 0 chr6 80698737 80698781 -68818256 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1200 315 49 0 0 chr6 80698781 80698821 -68818216 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1200 423 281 31 8 chr6 80698823 80698952 -68818085 - B1F1 SINE Alu -13 136 5 3 1200 24 0 0 0 chr6 80699771 80699795 -68817242 + AT_rich Low_complexity Low_complexity 1 24 0 3 1200 284 242 20 0 chr6 80700734 80700833 -68816204 + (TA)n Simple_repeat Simple_repeat 2 102 0 3 1200 319 311 119 27 chr6 80702020 80702205 -68814832 - RMER15 LTR ERVL -17 558 357 3 1200 729 184 66 11 chr6 80702511 80702692 -68814345 - Lx3_Mus LINE L1 0 7009 6819 3 1200 834 116 0 0 chr6 80703326 80703455 -68813582 + (TA)n Simple_repeat Simple_repeat 2 130 0 3 1200 219 158 0 0 chr6 80703832 80703870 -68813167 + T-rich Low_complexity Low_complexity 1 38 0 3 1200 492 48 0 0 chr6 80704430 80704493 -68812544 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 3 1200 1094 162 71 0 chr6 80704622 80704832 -68812205 + URR1B DNA MER1_type 1 225 0 3 1200 266 222 14 27 chr6 80707014 80707088 -68809949 + L1MC2 LINE L1 6247 6319 -25 3 1200 775 208 166 43 chr6 80708153 80708364 -68808673 - MTEa LTR MaLR 0 379 143 3 1200 2895 57 22 0 chr6 80708521 80708892 -68808145 + L1_Mus1 LINE L1 6188 6566 -1 3 1200 504 275 79 63 chr6 80708905 80709095 -68807942 + ID_B1 SINE B4 27 219 -5 3 1200 513 0 0 0 chr6 80709107 80709164 -68807873 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 3 1200 308 161 0 46 chr6 80709164 80709229 -68807808 - RMER6B LTR ERVK -2 459 398 3 1200 234 339 106 45 chr6 80709263 80709442 -68807595 + B3A SINE B2 3 192 -6 3 1200 447 52 0 0 chr6 80709579 80709637 -68807400 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1200 649 310 0 44 chr6 80710262 80710444 -68806593 + B3A SINE B2 1 174 -24 3 1200 189 0 0 0 chr6 80710715 80710736 -68806301 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1200 272 35 16 66 chr6 80711887 80711948 -68805089 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 3 1200 550 309 47 0 chr6 80712372 80712563 -68804474 - B3 SINE B2 -13 203 4 3 1200 256 385 124 28 chr6 80713293 80713721 -68803316 - L2a LINE L2 -32 3394 2926 3 1200 664 298 184 55 chr6 80713777 80714104 -68802933 + MTE2a LTR MaLR 7 375 -4 3 1200 895 182 93 5 chr6 80714293 80714497 -68802540 - URR1B DNA MER1_type -3 222 1 3 1200 926 218 62 0 chr6 80715366 80715559 -68801478 + B3 SINE B2 4 208 -8 3 1200 22 56 0 0 chr6 80715560 80715596 -68801441 + AT_rich Low_complexity Low_complexity 1 36 0 3 1200 252 100 0 0 chr6 80715606 80715646 -68801391 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1200 498 365 49 35 chr6 80715747 80716176 -68800861 + MLT1D LTR MaLR 66 500 -5 3 1200 318 50 0 0 chr6 80716564 80716604 -68800433 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 1200 1486 155 9 7 chr6 80716931 80717219 -68799818 - RMER6C LTR ERVK 0 690 365 3 1200 741 349 70 35 chr6 80717615 80718046 -68798991 - MER68 LTR ERVL 0 563 118 3 1200 466 309 30 12 chr6 80718234 80718401 -68798636 - B3 SINE B2 0 216 47 3 1200 324 0 0 0 chr6 80718514 80718550 -68798487 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 1200 1146 51 0 0 chr6 80718550 80718688 -68798349 - B1_Mm SINE Alu -9 138 1 3 1200 28 61 0 0 chr6 80718792 80718841 -68798196 + AT_rich Low_complexity Low_complexity 1 49 0 3 1200 342 0 0 0 chr6 80719298 80719336 -68797701 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1200 485 273 68 137 chr6 80719358 80719621 -68797416 - B4 SINE B4 -46 246 2 3 1200 617 0 14 0 chr6 80719630 80719703 -68797334 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1200 441 152 0 0 chr6 80719705 80719810 -68797227 + (CAGA)n Simple_repeat Simple_repeat 2 106 0 3 1200 228 355 20 82 chr6 80719868 80719966 -68797071 - B4 SINE B4 -141 151 60 3 1200 330 132 0 0 chr6 80719992 80720045 -68796992 + (A)n Simple_repeat Simple_repeat 1 53 0 3 1200 1174 48 0 14 chr6 80720050 80720198 -68796839 - B1_Mm SINE Alu 0 147 2 3 1200 440 279 121 23 chr6 80721115 80721247 -68795790 - B3 SINE B2 -65 151 7 3 1200 473 325 75 0 chr6 80721417 80721577 -68795460 - ID_B1 SINE B4 -30 194 23 3 1200 450 65 0 0 chr6 80722557 80722619 -68794418 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1200 267 31 0 0 chr6 80722619 80722651 -68794386 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1200 434 336 35 7 chr6 80722717 80722861 -68794176 - B4A SINE B4 -142 150 3 3 1200 365 102 0 17 chr6 80723005 80723065 -68793972 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1200 205 75 0 70 chr6 80724189 80724232 -68792805 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 3 1200 395 314 169 85 chr6 80725350 80725681 -68791356 - ORR1E LTR MaLR 0 359 1 3 1200 534 346 47 26 chr6 80725781 80726015 -68791022 + Tigger7 DNA MER2_type 44 282 -2209 3 1200 809 289 54 82 chr6 80726105 80726484 -68790553 + MTE2a LTR MaLR 19 370 0 3 1200 206 62 31 0 chr6 80726605 80726637 -68790400 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 3 1200 532 300 120 22 chr6 80726646 80726871 -68790166 - ORR1E LTR MaLR -69 290 44 3 1200 516 252 147 13 chr6 80727429 80727556 -68789481 + B3A SINE B2 5 154 -44 3 1200 477 0 0 0 chr6 80727556 80727609 -68789428 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1200 516 252 147 13 chr6 80727609 80727638 -68789399 + B3A SINE B2 155 182 -16 3 1200 244 109 0 42 chr6 80727652 80727700 -68789337 + RLTR40 LTR ERVK 563 608 -209 3 1200 2447 192 105 41 chr6 80728073 80728727 -68788310 - RMER17B LTR ERVK -153 736 5 3 1200 233 29 29 0 chr6 80728811 80728845 -68788192 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 1200 441 54 0 0 chr6 80728845 80728901 -68788136 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1200 243 0 0 0 chr6 80728901 80728927 -68788110 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1200 671 240 23 113 chr6 80729089 80729310 -68787727 + B3 SINE B2 16 216 0 4 1200 476 228 34 14 chr6 80730057 80730204 -68786833 - Lx9 LINE L1 -1 7643 7494 4 1200 738 275 0 26 chr6 80730206 80730400 -68786637 + Lx9 LINE L1 7110 7298 -346 4 1200 190 217 36 0 chr6 80730606 80730689 -68786348 + (TATG)n Simple_repeat Simple_repeat 2 87 0 4 1200 215 373 78 26 chr6 80730749 80730903 -68786134 - B4 SINE B4 -130 162 1 4 1200 2972 107 20 9 chr6 80730921 80731374 -68785663 - L1_Mus3 LINE L1 -5 6633 6176 4 1200 233 342 0 38 chr6 80731389 80731468 -68785569 - LTR37A LTR ERV1 -350 76 1 4 1200 702 274 49 5 chr6 80732619 80732824 -68784213 - B3 SINE B2 0 216 3 4 1200 627 299 6 6 chr6 80733402 80733580 -68783457 + Lx8 LINE L1 7055 7232 -241 4 1200 22 0 0 0 chr6 80734052 80734074 -68782963 + AT_rich Low_complexity Low_complexity 1 22 0 4 1200 1414 308 94 26 chr6 80734083 80734806 -68782231 - Lx8 LINE L1 -9 7464 6693 4 1200 1099 313 56 8 chr6 80734930 80735288 -68781749 + MTD LTR MaLR 45 419 0 4 1200 349 254 72 10 chr6 80736396 80736532 -68780505 + ORR1D1 LTR MaLR 162 301 -73 4 1200 3017 119 12 35 chr6 80736737 80737224 -68779813 + Lx2 LINE L1 6522 6997 0 4 1200 2927 52 0 0 chr6 80737661 80738028 -68779009 + L1Md_F2 LINE L1 6202 6568 -14 4 1200 180 167 0 0 chr6 80738769 80738817 -68778220 + T-rich Low_complexity Low_complexity 1 48 0 4 1200 197 43 62 21 chr6 80739279 80739327 -68777710 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1200 433 276 102 102 chr6 80739648 80739904 -68777133 - MER67D LTR ERV1 -226 435 47 4 18 3619 164 67 9 chr6 80739904 80740592 -68776445 - L1_Mm LINE L1 -389 5494 4767 4 1201 387 0 0 0 chr6 80742951 80742994 -68774043 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1201 279 0 0 0 chr6 80742994 80743024 -68774013 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1201 414 288 48 0 chr6 80743568 80743693 -68773344 - MER5A DNA MER1_type -28 161 31 4 1201 411 309 27 0 chr6 80744101 80744211 -68772826 - B3A SINE B2 -48 150 38 4 1201 29 0 0 0 chr6 80744293 80744322 -68772715 + AT_rich Low_complexity Low_complexity 1 29 0 4 1201 725 259 41 0 chr6 80744697 80744867 -68772170 + B3 SINE B2 30 206 -10 4 1201 188 214 0 45 chr6 80745106 80745150 -68771887 + MIRb SINE MIR 29 70 -198 4 1201 270 0 0 0 chr6 80745308 80745338 -68771699 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1201 428 35 0 17 chr6 80745338 80745396 -68771641 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 4 1201 207 218 0 0 chr6 80747252 80747307 -68769730 + (CATA)n Simple_repeat Simple_repeat 2 56 0 4 1201 1003 168 19 7 chr6 80747315 80747626 -68769411 + (TAGA)n Simple_repeat Simple_repeat 1 314 0 4 1201 1038 83 7 14 chr6 80748235 80748382 -68768655 + B1_Mus2 SINE Alu 2 147 0 4 1201 527 201 0 6 chr6 80748384 80748544 -68768493 + GA-rich Low_complexity Low_complexity 2 160 0 4 1201 923 307 83 40 chr6 80748577 80748926 -68768111 + MTE2a LTR MaLR 1 364 -15 4 1201 297 51 0 0 chr6 80749371 80749410 -68767627 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1201 1028 76 14 20 chr6 80749878 80750025 -68767012 + B1_Mm SINE Alu 2 147 0 4 1201 279 315 77 77 chr6 80750186 80750382 -68766655 - L2a LINE L2 -110 3316 3121 4 1201 269 82 0 20 chr6 80750465 80750515 -68766522 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1201 825 303 82 45 chr6 80751247 80751627 -68765410 - MTD LTR MaLR -16 363 6 4 1201 408 132 0 0 chr6 80752582 80752665 -68764372 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1201 303 28 0 0 chr6 80752665 80752701 -68764336 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1201 248 264 111 0 chr6 80752745 80752817 -68764220 - B4 SINE B4 -17 275 196 4 1201 422 343 21 21 chr6 80755254 80755397 -68761640 + RSINE1 SINE B4 4 146 -19 4 1201 277 277 100 89 chr6 80755397 80755444 -68761593 + B2_Mm2 SINE B2 3 194 -1 4 1201 662 267 61 5 chr6 80755858 80756054 -68760983 - RMER15 LTR ERVL -347 228 22 4 1201 592 99 20 10 chr6 80756155 80756257 -68760780 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 4 1201 650 233 72 15 chr6 80756266 80756485 -68760552 + MT2A LTR ERVL 194 541 -43 4 1201 384 104 0 0 chr6 80756485 80756552 -68760485 + (CAGAGA)n Simple_repeat Simple_repeat 3 69 0 4 1201 241 103 51 0 chr6 80756552 80756591 -68760446 + MT2A LTR ERVL 488 528 -5 4 1201 3080 68 10 2 chr6 80756940 80757337 -68759700 + MTB LTR MaLR 1 400 0 4 1201 1169 330 79 40 chr6 80757554 80758336 -68758701 + Lx8 LINE L1 6646 7458 -15 4 1201 22 80 0 0 chr6 80760096 80760146 -68756891 + AT_rich Low_complexity Low_complexity 1 50 0 4 1201 232 154 0 37 chr6 80760271 80760325 -68756712 + T-rich Low_complexity Low_complexity 2 53 0 4 1201 544 264 19 77 chr6 80760582 80760791 -68756246 + B3A SINE B2 2 198 0 4 1201 189 0 0 0 chr6 80761426 80761447 -68755590 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 4 1201 312 200 0 0 chr6 80762024 80762099 -68754938 + A-rich Low_complexity Low_complexity 1 75 0 4 1201 180 0 0 0 chr6 80762760 80762780 -68754257 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 1201 22 0 0 0 chr6 80763028 80763050 -68753987 + AT_rich Low_complexity Low_complexity 1 22 0 4 1201 1671 179 92 17 chr6 80763913 80763974 -68753063 - ORR1C2 LTR MaLR 0 384 321 4 1201 973 134 0 11 chr6 80763974 80764148 -68752889 + (GGA)n Simple_repeat Simple_repeat 3 174 0 4 1201 1671 179 92 17 chr6 80764148 80764443 -68752594 - ORR1C2 LTR MaLR -64 320 1 4 1201 230 329 123 31 chr6 80764547 80764710 -68752327 - MER5A DNA MER1_type 0 189 12 4 1201 1356 220 127 0 chr6 80765559 80765683 -68751354 - Lx9 LINE L1 -3 7641 7516 4 1201 444 51 0 0 chr6 80765683 80765742 -68751295 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1201 1356 220 127 0 chr6 80765742 80765963 -68751074 - Lx9 LINE L1 -129 7515 7254 4 1201 452 193 142 8 chr6 80766001 80766121 -68750916 - MTD LTR MaLR 0 419 284 4 1201 501 365 23 31 chr6 80766113 80766373 -68750664 + B4 SINE B4 26 283 -9 4 1201 22 0 0 0 chr6 80766521 80766543 -68750494 + AT_rich Low_complexity Low_complexity 1 22 0 4 1201 290 355 86 58 chr6 80766772 80767050 -68749987 - MLT1A LTR MaLR -86 288 3 4 1201 1051 185 41 14 chr6 80767110 80767329 -68749708 + URR1A DNA MER1_type 2 226 0 4 1201 1489 315 102 23 chr6 80768159 80768866 -68748171 - Lx8 LINE L1 -121 7352 6590 4 1201 691 115 19 0 chr6 80769750 80769854 -68747183 - B2_Mm2 SINE B2 -88 107 2 4 1201 185 0 40 0 chr6 80770589 80770614 -68746423 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1201 406 319 42 18 chr6 80771169 80771335 -68745702 - MER31A LTR ERV1 -89 396 227 4 1201 453 368 12 80 chr6 80771346 80771597 -68745440 + B4 SINE B4 56 289 -3 4 1201 339 25 0 0 chr6 80771601 80771641 -68745396 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1201 3094 141 64 20 chr6 80771681 80772231 -68744806 + RMER4B LTR ERVK 1 574 -11 4 1201 681 318 36 28 chr6 80772277 80772526 -68744511 - MER31A LTR ERV1 -230 255 5 4 1201 276 280 43 70 chr6 80772567 80772682 -68744355 - PB1D10 SINE Alu -1 116 5 4 1201 204 40 0 0 chr6 80773316 80773341 -68743696 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1201 201 189 18 36 chr6 80773596 80773651 -68743386 + T-rich Low_complexity Low_complexity 2 55 0 4 1201 1345 244 55 36 chr6 80773687 80774089 -68742948 - MTD LTR MaLR -14 405 13 4 1201 234 125 0 0 chr6 80774090 80774138 -68742899 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 4 1201 192 77 0 0 chr6 80774342 80774368 -68742669 + (TTC)n Simple_repeat Simple_repeat 2 27 0 4 1201 317 43 0 21 chr6 80774370 80774418 -68742619 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1201 1042 83 0 14 chr6 80774436 80774583 -68742454 - B1_Mus1 SINE Alu -1 147 3 4 1201 877 286 81 38 chr6 80774793 80775186 -68741851 + Tigger7 DNA MER2_type 68 477 -2014 4 1201 407 354 46 25 chr6 80775789 80775986 -68741051 - MLT1I LTR MaLR -2 409 209 4 1201 537 234 142 25 chr6 80776224 80776386 -68740651 + MTE2a LTR MaLR 193 373 -6 4 1201 813 196 88 148 chr6 80776565 80776607 -68740430 - RLTR25B LTR ERVK 0 1028 998 4 1201 4100 50 8 4 chr6 80776607 80777125 -68739912 - L1Md_F2 LINE L1 0 6582 6063 4 1201 813 196 88 148 chr6 80777125 80777244 -68739793 - RLTR25B LTR ERVK -31 997 885 4 1201 365 0 22 0 chr6 80777244 80777289 -68739748 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1201 328 111 14 14 chr6 80777289 80777361 -68739676 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1201 813 196 88 148 chr6 80777361 80777502 -68739535 - RLTR25B LTR ERVK -144 884 743 4 1201 4458 155 42 17 chr6 80777679 80778574 -68738463 - RLTR25A LTR ERVK -165 863 6 4 1201 186 191 0 0 chr6 80779919 80779961 -68737076 + (TATAG)n Simple_repeat Simple_repeat 4 45 0 4 1201 293 293 40 0 chr6 80779963 80780038 -68736999 - PB1D7 SINE Alu -31 89 12 4 1201 223 194 16 31 chr6 80780285 80780349 -68736688 + A-rich Low_complexity Low_complexity 6 68 0 4 1201 25 51 0 0 chr6 80781142 80781181 -68735856 + AT_rich Low_complexity Low_complexity 1 39 0 4 1201 259 220 17 0 chr6 80781590 80781649 -68735388 + L1_Mur1 LINE L1 5379 5438 -448 4 1201 1192 36 0 0 chr6 80781685 80781824 -68735213 + B1_Mus1 SINE Alu 1 139 -9 4 1201 258 56 0 0 chr6 80781824 80781860 -68735177 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1201 2097 213 81 76 chr6 80781870 80782558 -68734479 + RMER13B LTR ERVK 95 832 -126 4 1201 263 311 61 0 chr6 80782613 80782761 -68734276 - L1M1 LINE L1 -613 5690 5534 5 1201 271 241 23 46 chr6 80782763 80782850 -68734187 - RMER13B LTR ERVK -823 85 1 5 1201 474 335 47 7 chr6 80783034 80783311 -68733726 - L1MA5 LINE L1 -224 6076 5789 5 1201 518 261 6 64 chr6 80783403 80783575 -68733462 + RSINE1 SINE B4 2 163 -2 5 1201 405 0 0 0 chr6 80783804 80783849 -68733188 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1201 813 277 56 38 chr6 80783969 80784233 -68732804 + ORR1E LTR MaLR 4 272 -87 5 1201 1344 267 83 3 chr6 80784233 80784582 -68732455 + MTE2b LTR MaLR 3 379 0 5 1201 230 279 22 44 chr6 80784582 80784670 -68732367 + ORR1E LTR MaLR 288 373 -6 5 1201 339 295 143 31 chr6 80785207 80785466 -68731571 + Lx8 LINE L1 7186 7473 0 5 1201 24 32 0 0 chr6 80785796 80785827 -68731210 + AT_rich Low_complexity Low_complexity 1 31 0 5 1201 633 312 6 0 chr6 80786840 80787013 -68730024 + B3A SINE B2 3 176 -22 5 1201 36 40 0 0 chr6 80787058 80787108 -68729929 + AT_rich Low_complexity Low_complexity 1 50 0 5 1201 3621 208 73 34 chr6 80787227 80788010 -68729027 + Lx5 LINE L1 5825 6647 -403 5 1201 3160 66 2 0 chr6 80788010 80788403 -68728634 + MTA_Mm LTR MaLR 3 396 0 5 1201 3621 208 73 34 chr6 80788403 80788480 -68728557 + Lx5 LINE L1 6648 6719 -331 5 1201 323 192 46 46 chr6 80788476 80788585 -68728452 + Lx5 LINE L1 6941 7049 -1 5 1201 272 277 73 21 chr6 80788604 80788700 -68728337 + LTR40a LTR ERVL 109 209 -310 5 1201 221 0 0 33 chr6 80789062 80789092 -68727945 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1201 229 326 0 125 chr6 80789114 80789226 -68727811 - MER20 DNA MER1_type -11 208 111 5 1201 336 252 59 59 chr6 80790017 80790186 -68726851 + L1MA4A LINE L1 5764 5932 -371 5 1201 342 0 0 0 chr6 80790203 80790241 -68726796 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1201 549 55 0 0 chr6 80790241 80790313 -68726724 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1201 24 32 0 0 chr6 80790597 80790628 -68726409 + AT_rich Low_complexity Low_complexity 1 31 0 5 1201 2810 84 8 0 chr6 80790643 80791023 -68726014 - MTB LTR MaLR -8 392 10 5 1201 263 250 0 10 chr6 80791159 80791260 -68725777 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 1201 23 33 0 0 chr6 80791288 80791318 -68725719 + AT_rich Low_complexity Low_complexity 1 30 0 5 1201 29 70 0 0 chr6 80791412 80791469 -68725568 + AT_rich Low_complexity Low_complexity 1 57 0 5 1201 32 0 0 0 chr6 80791838 80791870 -68725167 + AT_rich Low_complexity Low_complexity 1 32 0 5 1201 1034 84 7 0 chr6 80792021 80792163 -68724874 - RLTR27 LTR ERVK 0 309 167 5 1201 1423 25 0 0 chr6 80792176 80792337 -68724700 - L1Md_F2 LINE L1 -183 6399 6239 5 1201 33 25 0 0 chr6 80792348 80792388 -68724649 + AT_rich Low_complexity Low_complexity 1 40 0 5 1201 22 35 0 0 chr6 80792444 80792473 -68724564 + AT_rich Low_complexity Low_complexity 1 29 0 5 1201 700 344 58 52 chr6 80792495 80792974 -68724063 + Arthur1B DNA Tip100 250 731 -494 5 1201 318 26 0 0 chr6 80793074 80793113 -68723924 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1201 642 318 14 58 chr6 80793116 80793323 -68723714 + B3A SINE B2 1 198 0 5 1201 21 0 0 0 chr6 80793323 80793344 -68723693 + AT_rich Low_complexity Low_complexity 1 21 0 5 1201 851 48 0 31 chr6 80793404 80793532 -68723505 - L1Md_F2 LINE L1 0 6582 6459 5 1201 727 238 92 1 chr6 80793915 80794097 -68722940 + B3A SINE B2 6 201 -15 5 1201 534 295 0 24 chr6 80794554 80794679 -68722358 + B1F SINE Alu 1 122 -27 5 1201 371 148 47 58 chr6 80794647 80794733 -68722304 + B1F2 SINE Alu 65 149 0 5 1201 432 82 0 0 chr6 80794804 80794865 -68722172 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1201 24 0 0 0 chr6 80795784 80795808 -68721229 + AT_rich Low_complexity Low_complexity 1 24 0 5 1201 252 0 0 0 chr6 80796170 80796198 -68720839 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1201 1063 85 43 0 chr6 80796202 80796343 -68720694 - B1_Mus2 SINE Alu 0 147 1 5 1201 329 307 149 50 chr6 80796592 80796924 -68720113 + MLT1A1 LTR MaLR 1 408 0 5 1201 273 276 107 29 chr6 80797087 80797292 -68719745 - L1M4 LINE L1 -891 5255 5035 5 1201 223 195 0 0 chr6 80797626 80797667 -68719370 + T-rich Low_complexity Low_complexity 1 41 0 5 1201 382 360 17 22 chr6 80797822 80798020 -68719017 - ORR1E LTR MaLR -185 189 6 5 1201 1071 284 64 22 chr6 80798028 80798376 -68718661 + MTD LTR MaLR 18 379 0 5 1201 436 235 8 40 chr6 80798393 80798517 -68718520 - RLTR9E LTR ERVK 0 409 290 5 1201 4044 139 90 41 chr6 80799134 80799837 -68717200 + RMER19A LTR ERVK 1 737 0 5 1201 268 286 112 35 chr6 80800517 80800633 -68716404 - B4A SINE B4 -3 289 165 5 1201 315 0 0 0 chr6 80800696 80800731 -68716306 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1201 915 273 56 76 chr6 80800979 80801345 -68715692 - MTE2a LTR MaLR -30 389 21 5 1201 584 319 31 6 chr6 80802912 80803073 -68713964 + B3A SINE B2 1 165 -33 5 1201 341 165 13 26 chr6 80803135 80803206 -68713831 - ORR1B2 LTR MaLR -8 413 319 5 1201 674 275 6 30 chr6 80803206 80803371 -68713666 + B3A SINE B2 1 161 -37 5 1201 198 71 0 0 chr6 80803398 80803426 -68713611 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1201 620 281 84 15 chr6 80804616 80804784 -68712253 + B3 SINE B2 1 183 -33 5 1201 183 80 0 0 chr6 80804784 80804809 -68712228 + (CATA)n Simple_repeat Simple_repeat 4 28 0 5 1201 620 281 84 15 chr6 80804809 80804842 -68712195 + B3 SINE B2 184 216 0 5 1201 207 114 0 0 chr6 80805210 80805245 -68711792 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 5 1201 197 378 21 56 chr6 80805721 80805864 -68711173 - MIRb SINE MIR -119 149 12 5 1201 849 261 107 87 chr6 80805864 80806230 -68710807 - MTE2a LTR MaLR -6 373 1 5 1201 26 30 0 0 chr6 80806460 80806493 -68710544 + AT_rich Low_complexity Low_complexity 1 33 0 5 1201 23 0 0 0 chr6 80806558 80806581 -68710456 + AT_rich Low_complexity Low_complexity 1 23 0 5 1201 603 239 40 23 chr6 80807589 80807773 -68709264 - MTEb LTR MaLR -5 374 163 5 1201 22 0 0 0 chr6 80807835 80807857 -68709180 + AT_rich Low_complexity Low_complexity 1 22 0 5 1201 758 76 30 0 chr6 80807873 80808005 -68709032 + (GA)n Simple_repeat Simple_repeat 2 137 0 5 1201 286 256 22 109 chr6 80808007 80808099 -68708938 - RSINE1 SINE B4 -39 126 43 5 1201 553 299 7 7 chr6 80808695 80808843 -68708194 + B3A SINE B2 8 155 -43 5 1201 369 58 0 0 chr6 80808872 80808924 -68708113 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1201 513 316 195 13 chr6 80811121 80811352 -68705685 + B4A SINE B4 18 290 -2 5 1201 267 225 0 0 chr6 80811908 80811979 -68705058 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1201 386 0 0 0 chr6 80811979 80812022 -68705015 + HAL1-3A_ME LINE L1 1976 2018 -840 5 1201 437 346 13 0 chr6 80812837 80812996 -68704041 - RSINE1 SINE B4 -2 163 3 5 1201 554 310 6 17 chr6 80813462 80813636 -68703401 + B3A SINE B2 1 172 -26 5 1201 333 0 0 0 chr6 80813844 80813881 -68703156 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1201 209 139 28 0 chr6 80813962 80813998 -68703039 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 5 1201 1143 165 56 5 chr6 80814016 80814229 -68702808 - Lx5 LINE L1 -98 6952 6729 5 1201 352 325 17 17 chr6 80814960 80815079 -68701958 - RSINE1 SINE B4 0 165 47 5 1201 399 202 0 0 chr6 80816562 80816651 -68700386 + (TATG)n Simple_repeat Simple_repeat 3 91 0 5 1201 585 250 55 50 chr6 80816661 80816863 -68700174 - B3A SINE B2 -13 203 1 5 1201 349 329 60 119 chr6 80817496 80817848 -68699189 - MTEa LTR MaLR 0 379 49 5 1201 552 24 37 0 chr6 80817923 80818005 -68699032 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 1201 592 264 82 11 chr6 80818018 80818202 -68698835 - MTE-int LTR MaLR -56 1524 1328 5 1201 201 210 48 0 chr6 80818698 80818760 -68698277 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1201 287 284 27 0 chr6 80818761 80818835 -68698202 - B4 SINE B4 0 292 217 5 1201 630 0 0 0 chr6 80818873 80818943 -68698094 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 1201 270 216 0 0 chr6 80818943 80818994 -68698043 - B3A SINE B2 -33 165 115 5 1201 211 299 20 20 chr6 80819095 80819152 -68697885 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 5 1201 398 291 74 7 chr6 80819152 80819287 -68697750 + RSINE1 SINE B4 4 147 -18 5 1201 211 299 20 20 chr6 80819287 80819328 -68697709 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 1201 3415 174 36 3 chr6 80820228 80820934 -68696103 - Lx5 LINE L1 -1102 5948 5219 5 1201 455 289 105 111 chr6 80821058 80821437 -68695600 + MTE2a LTR MaLR 8 379 0 5 1201 269 70 52 17 chr6 80821992 80822050 -68694987 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1201 321 294 8 85 chr6 80822052 80822182 -68694855 + Tigger1 DNA MER2_type 5 124 -2294 5 1201 4919 193 28 60 chr6 80822273 80823385 -68693652 + Lx7 LINE L1 4750 5827 -53 5 1201 377 20 0 20 chr6 80823385 80823436 -68693601 + (CAA)n Simple_repeat Simple_repeat 2 51 0 5 1201 4919 237 56 45 chr6 80823436 80823938 -68693099 + Lx7 LINE L1 5828 6345 -1351 5 1201 272 186 17 0 chr6 80823938 80823997 -68693040 + Lx7 LINE L1 6130 6189 -1507 5 1201 204 214 0 0 chr6 80823997 80824039 -68692998 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 5 1201 980 154 224 0 chr6 80824102 80824298 -68692739 + RMER6C LTR ERVK 3 242 -514 5 1201 522 157 22 0 chr6 80824356 80824445 -68692592 + RMER6C LTR ERVK 484 574 -116 5 1201 521 143 0 0 chr6 80824519 80824596 -68692441 - B1_Mus1 SINE Alu -53 95 19 5 1201 1148 68 0 13 chr6 80824656 80824806 -68692231 - L1_Mus4 LINE L1 -365 6271 6124 5 1201 2362 110 8 16 chr6 80824808 80825178 -68691859 + L1_Mus4 LINE L1 6264 6630 -6 5 1201 201 39 0 0 chr6 80825241 80825267 -68691770 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 5 1201 856 74 58 0 chr6 80825268 80825389 -68691648 - B1_Mus1 SINE Alu -10 138 11 6 1201 35 24 0 0 chr6 80825389 80825431 -68691606 + AT_rich Low_complexity Low_complexity 1 42 0 6 1201 693 107 0 10 chr6 80825547 80825651 -68691386 + ORR1B1 LTR MaLR 292 394 0 6 1201 201 143 0 0 chr6 80825652 80825687 -68691350 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1201 22 35 0 0 chr6 80825732 80825761 -68691276 + AT_rich Low_complexity Low_complexity 1 29 0 6 1201 913 216 121 34 chr6 80825875 80826227 -68690810 + Lx7 LINE L1 7060 7696 0 5 1201 297 348 9 0 chr6 80826244 80826356 -68690681 + Tigger1 DNA MER2_type 2301 2413 -5 5 1201 224 342 12 12 chr6 80826605 80826685 -68690352 + B4A SINE B4 2 81 -211 6 1201 717 23 0 0 chr6 80826853 80826940 -68690097 + (CA)n Simple_repeat Simple_repeat 2 88 0 6 1201 2256 111 3 3 chr6 80826953 80827278 -68689759 + ORR1A2 LTR MaLR 3 327 0 6 1201 210 71 0 0 chr6 80827286 80827314 -68689723 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1201 4337 246 81 17 chr6 80828008 80829259 -68687778 - Lx9 LINE L1 0 7644 6314 6 1201 402 57 0 0 chr6 80829265 80829318 -68687719 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1201 284 338 7 111 chr6 80829590 80829743 -68687294 - RMER13A LTR ERVK -21 839 703 6 1201 1388 257 108 56 chr6 80829715 80829871 -68687166 - RMER17B LTR ERVK -331 627 460 6 1201 385 35 52 0 chr6 80829871 80829929 -68687108 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 6 1201 1388 257 108 56 chr6 80829929 80829942 -68687095 - RMER17B LTR ERVK -499 459 438 6 1201 2002 103 38 28 chr6 80829942 80830260 -68686777 - L1_Mus3 LINE L1 -3 6635 6315 6 1201 1388 257 108 56 chr6 80830260 80830683 -68686354 - RMER17B LTR ERVK -521 437 4 6 1201 677 214 76 110 chr6 80830741 80830977 -68686060 - RMER12 LTR ERVK -103 1219 992 6 1201 180 77 0 0 chr6 80830979 80831005 -68686032 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1201 726 12 0 0 chr6 80831005 80831088 -68685949 + (GA)n Simple_repeat Simple_repeat 1 83 0 6 1201 1277 182 156 0 chr6 80831088 80831363 -68685674 - RMER12 LTR ERVK -431 891 574 6 1201 6856 68 4 4 chr6 80831365 80832323 -68684714 - L1_Mm LINE L1 -3688 2195 1238 6 1201 4517 76 0 0 chr6 80832323 80832913 -68684124 + L1Md_F2 LINE L1 4996 5585 -298 6 1201 7517 65 15 12 chr6 80832914 80833906 -68683131 + L1Md_F2 LINE L1 5587 6581 -1 6 1201 3313 138 54 0 chr6 80833906 80834462 -68682575 - RMER12 LTR ERVK -736 586 1 6 1201 458 333 0 27 chr6 80834631 80834816 -68682221 + B3A SINE B2 1 180 -18 6 1201 467 335 26 6 chr6 80836157 80836313 -68680724 + B3A SINE B2 9 167 -31 6 1201 230 246 0 47 chr6 80837107 80837171 -68679866 + CT-rich Low_complexity Low_complexity 1 61 0 6 1201 725 41 10 0 chr6 80838049 80838146 -68678891 + (CA)n Simple_repeat Simple_repeat 2 99 0 6 1201 24 67 0 0 chr6 80839244 80839289 -68677748 + AT_rich Low_complexity Low_complexity 1 45 0 6 1201 530 315 5 38 chr6 80839297 80839482 -68677555 - B3A SINE B2 -16 182 4 6 1201 1996 335 66 26 chr6 80839704 80840533 -68676504 + MTE-int LTR MaLR 712 1573 -7 6 1201 208 167 0 23 chr6 80841262 80841305 -68675732 + T-rich Low_complexity Low_complexity 4 45 0 6 1201 594 310 92 40 chr6 80841335 80841661 -68675376 + MT2A LTR ERVL 15 357 -176 6 1201 27 0 0 0 chr6 80842203 80842230 -68674807 + AT_rich Low_complexity Low_complexity 1 27 0 6 1201 1722 199 73 0 chr6 80842683 80843040 -68673997 - ORR1C2 LTR MaLR 0 384 2 6 1201 954 324 61 69 chr6 80843704 80844165 -68672872 + MT2A LTR ERVL 1 457 -76 6 1201 351 0 0 0 chr6 80844925 80844964 -68672073 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1201 3589 125 58 10 chr6 80845586 80846170 -68670867 - Lx2 LINE L1 0 6997 6386 6 1201 2665 104 57 2 chr6 80846172 80846576 -68670461 + Lx2 LINE L1 5961 6386 -611 6 1201 221 186 33 17 chr6 80846922 80846982 -68670055 + A-rich Low_complexity Low_complexity 3 63 0 6 1201 562 319 94 47 chr6 80846984 80847260 -68669777 + B4A SINE B4 1 289 -3 6 1201 243 0 0 0 chr6 80847286 80847313 -68669724 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1201 594 343 49 35 chr6 80847985 80848272 -68668765 - B4 SINE B4 0 292 2 6 1201 302 357 20 67 chr6 80848572 80848722 -68668315 + B4A SINE B4 148 290 -2 6 1201 260 242 15 29 chr6 80848769 80848837 -68668200 + CT-rich Low_complexity Low_complexity 5 71 0 6 1201 888 191 0 0 chr6 80848889 80849067 -68667970 + CT-rich Low_complexity Low_complexity 3 180 0 6 1201 541 315 14 0 chr6 80849127 80849270 -68667767 - ID_B1 SINE B4 -26 198 54 6 1201 653 150 0 0 chr6 80849844 80849957 -68667080 - L1_Mur1 LINE L1 -822 5064 4952 6 1201 5593 95 24 2 chr6 80849960 80850750 -68666287 + L1_Mus4 LINE L1 5827 6633 -3 6 1201 296 322 49 0 chr6 80850884 80851098 -68665939 + (TATATG)n Simple_repeat Simple_repeat 1 224 0 6 1201 319 247 39 0 chr6 80851114 80851191 -68665846 - B4A SINE B4 -13 279 200 6 1201 420 20 0 0 chr6 80851504 80851553 -68665484 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1201 486 0 0 0 chr6 80851553 80851606 -68665431 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 1201 4979 84 0 1 chr6 80851614 80852283 -68664754 + L1Md_F2 LINE L1 5903 6570 -12 6 1201 317 323 0 41 chr6 80853335 80853432 -68663605 - BC1_Mm scRNA scRNA -58 94 2 6 1201 403 302 27 48 chr6 80853466 80853612 -68663425 - ID_B1 SINE B4 0 224 82 6 1201 579 299 15 0 chr6 80853671 80853808 -68663229 + B1_Mur2 SINE Alu 2 140 -9 6 1201 732 309 69 11 chr6 80854078 80854353 -68662684 + Lx8 LINE L1 6975 7265 -208 6 1201 257 281 0 0 chr6 80854459 80854516 -68662521 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1201 2729 93 40 5 chr6 80854524 80854924 -68662113 - L1Md_F2 LINE L1 0 6582 6169 6 1201 401 308 83 0 chr6 80855667 80855800 -68661237 + ID_B1 SINE B4 81 224 0 6 1201 322 377 69 55 chr6 80856058 80856333 -68660704 - B4 SINE B4 -11 281 3 6 1201 509 291 11 11 chr6 80856612 80856842 -68660195 + (CATATA)n Simple_repeat Simple_repeat 1 230 0 6 1201 237 425 6 11 chr6 80856746 80856927 -68660110 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1201 198 60 120 0 chr6 80856931 80856981 -68660056 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 6 1201 405 0 0 0 chr6 80857357 80857402 -68659635 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1201 260 246 0 0 chr6 80857437 80857494 -68659543 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1201 537 374 54 8 chr6 80857551 80857791 -68659246 - B4A SINE B4 -38 254 4 6 1201 834 310 70 44 chr6 80857954 80858456 -68658581 + L1MCa LINE L1 244 758 -5993 6 1201 1237 283 92 5 chr6 80858473 80858843 -68658194 - MTD LTR MaLR 0 419 18 6 1201 255 257 38 12 chr6 80858898 80858978 -68658059 + L1MCa LINE L1 907 967 -5784 6 1201 245 195 0 0 chr6 80859088 80859129 -68657908 - MTD LTR MaLR -78 341 301 6 1201 3837 156 21 6 chr6 80859131 80859829 -68657208 - L1_Mur2 LINE L1 -1992 3885 3177 6 1201 4114 120 26 3 chr6 80859812 80860491 -68656546 - MusHAL1 LINE L1 -750 1962 1268 6 1201 5434 132 32 1 chr6 80860493 80861379 -68655658 + Lx LINE L1 5542 6454 -200 6 1201 8698 71 6 1 chr6 80861380 80862572 -68654465 + ORR1A1-int LTR MaLR 595 1792 0 6 1201 2958 38 0 0 chr6 80862572 80862918 -68654119 + ORR1A1 LTR MaLR 1 346 0 6 1201 691 261 82 15 chr6 80862925 80863193 -68653844 - Lx6 LINE L1 -1219 6241 5956 6 1201 265 200 9 45 chr6 80863197 80863307 -68653730 + CT-rich Low_complexity Low_complexity 2 107 0 6 1201 225 306 56 0 chr6 80863361 80863379 -68653658 - B1F2 SINE Alu -64 85 10 6 1201 247 278 0 0 chr6 80863379 80863433 -68653604 - B4A SINE B4 -144 148 95 6 1201 24 0 0 0 chr6 80864475 80864499 -68652538 + AT_rich Low_complexity Low_complexity 1 24 0 6 1201 711 158 0 0 chr6 80864620 80864785 -68652252 + CT-rich Low_complexity Low_complexity 2 166 0 6 1201 410 283 57 44 chr6 80864792 80864951 -68652086 - B3A SINE B2 -15 183 23 6 1201 520 324 21 0 chr6 80864979 80865121 -68651916 - B1_Mur1 SINE Alu -3 146 2 6 1201 648 264 23 165 chr6 80866339 80866557 -68650480 - B3 SINE B2 -19 197 1 6 1201 487 286 92 7 chr6 80866934 80867001 -68650036 + ID SINE ID 2 80 -144 6 1201 304 342 53 18 chr6 80867001 80867114 -68649923 + PB1D10 SINE Alu 1 117 0 6 1201 356 327 105 79 chr6 80868461 80868703 -68648334 + B4 SINE B4 24 274 -18 6 1201 324 70 0 0 chr6 80868766 80868809 -68648228 + (CAT)n Simple_repeat Simple_repeat 1 43 0 6 1201 443 301 88 0 chr6 80869893 80870029 -68647008 + B1_Mur3 SINE Alu 2 149 0 6 1201 569 382 14 9 chr6 80870227 80870441 -68646596 - B4A SINE B4 -75 217 3 6 1201 1513 241 20 11 chr6 80870515 80870863 -68646174 - Lx6 LINE L1 0 7460 7110 6 150 505 317 76 42 chr6 80871341 80871578 -68645459 + B4A SINE B4 48 292 0 6 1202 225 271 0 0 chr6 80871578 80871700 -68645337 + (CA)n Simple_repeat Simple_repeat 1 122 0 6 1202 667 163 0 22 chr6 80872431 80872569 -68644468 + Lx3A LINE L1 6843 6977 -4 6 1202 513 238 58 50 chr6 80872587 80872832 -68644205 - RMER20A LTR ERVK -175 452 220 6 1202 276 51 26 0 chr6 80872954 80872993 -68644044 - MTC LTR MaLR -381 40 1 6 1202 1180 245 66 3 chr6 80872993 80873271 -68643766 - MTD LTR MaLR -123 296 1 6 1202 374 259 12 0 chr6 80873462 80873547 -68643490 - ID_B1 SINE B4 -3 221 136 6 1202 495 138 0 0 chr6 80875520 80875607 -68641430 + (CA)n Simple_repeat Simple_repeat 1 87 0 6 1202 1675 261 46 15 chr6 80875617 80876092 -68640945 - Lx7 LINE L1 -388 7308 6819 6 1202 552 233 15 0 chr6 80876101 80876234 -68640803 - L1_Mur3 LINE L1 -359 5521 5387 6 1202 294 200 0 0 chr6 80876233 80876283 -68640754 + L1_Rod LINE L1 5139 5188 -659 6 1202 867 288 36 69 chr6 80877031 80877393 -68639644 + Lx7 LINE L1 6895 7244 -452 6 1202 182 184 0 73 chr6 80877574 80877615 -68639422 - L3 LINE CR1 -3625 864 827 6 1202 510 125 0 0 chr6 80879188 80879268 -68637769 + (TCC)n Simple_repeat Simple_repeat 2 81 0 6 1202 349 347 83 33 chr6 80879952 80880226 -68636811 - B4A SINE B4 -8 284 1 6 1202 224 272 11 21 chr6 80880505 80880599 -68636438 + (TA)n Simple_repeat Simple_repeat 1 93 0 6 1202 309 26 0 0 chr6 80880600 80880638 -68636399 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1202 3601 73 14 12 chr6 80881004 80881500 -68635537 + L1Md_F2 LINE L1 6085 6581 -1 7 1202 475 241 14 43 chr6 80882159 80882298 -68634739 - Lx6 LINE L1 -10 7450 7316 7 1202 29 78 0 0 chr6 80882332 80882396 -68634641 + AT_rich Low_complexity Low_complexity 1 64 0 7 1202 435 282 31 67 chr6 80883114 80883308 -68633729 - B3A SINE B2 -6 192 6 7 1202 26 30 0 0 chr6 80883774 80883807 -68633230 + AT_rich Low_complexity Low_complexity 1 33 0 7 1202 408 274 62 93 chr6 80884179 80884372 -68632665 + MTE2a LTR MaLR 161 347 -32 7 1202 396 0 0 0 chr6 80884433 80884477 -68632560 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 1202 21 71 0 0 chr6 80884692 80884734 -68632303 + AT_rich Low_complexity Low_complexity 1 42 0 7 1202 387 0 0 0 chr6 80884917 80884960 -68632077 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1202 4463 121 61 15 chr6 80885030 80885256 -68631781 - Lx LINE L1 -7 6647 6418 7 1202 273 57 0 0 chr6 80885256 80885291 -68631746 + (TA)n Simple_repeat Simple_repeat 2 36 0 7 1202 4463 144 116 7 chr6 80885291 80886386 -68630651 - Lx LINE L1 -237 6417 5198 7 1202 1531 174 8 4 chr6 80886411 80886677 -68630360 + Lx2B LINE L1 5296 5562 -324 7 1202 4791 213 86 43 chr6 80886679 80886767 -68630270 + Lx2B LINE L1 5707 5794 -1206 7 1202 2016 142 27 9 chr6 80886767 80887095 -68629942 + Lx3A LINE L1 6642 6975 -6 7 1202 4791 213 86 43 chr6 80887095 80888246 -68628791 + Lx2B LINE L1 5795 6999 -1 7 1202 726 265 101 15 chr6 80888254 80888453 -68628584 - B3 SINE B2 0 216 1 7 1202 25 31 0 0 chr6 80888588 80888620 -68628417 + AT_rich Low_complexity Low_complexity 1 32 0 7 1202 27 73 0 0 chr6 80890135 80890190 -68626847 + AT_rich Low_complexity Low_complexity 1 55 0 7 1202 548 276 58 29 chr6 80890534 80890739 -68626298 - B3 SINE B2 -1 215 5 7 1202 306 0 0 0 chr6 80891122 80891156 -68625881 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1202 369 0 0 0 chr6 80891156 80891196 -68625841 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1202 333 197 12 73 chr6 80891523 80891605 -68625432 + MTEb LTR MaLR 1 77 -302 7 1202 943 323 43 26 chr6 80891694 80891999 -68625038 - MTE2b LTR MaLR -18 361 52 7 1202 12381 139 22 41 chr6 80892103 80892643 -68624394 - L1VL2 LINE L1 -2833 3310 2790 7 1202 2151 27 4 0 chr6 80892643 80892900 -68624137 + L1Md_F3 LINE L1 6325 6582 -2 7 1202 1944 46 0 4 chr6 80892900 80893141 -68623896 + L1_Mus1 LINE L1 6328 6567 0 7 1202 12381 92 19 29 chr6 80893141 80894739 -68622298 - L1VL2 LINE L1 -1125 2789 1191 7 1202 369 0 0 0 chr6 80894739 80894780 -68622257 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1202 5170 113 149 13 chr6 80894780 80895479 -68621558 - L1VL2 LINE L1 -5444 1190 371 7 1202 22 0 0 0 chr6 80895602 80895624 -68621413 + AT_rich Low_complexity Low_complexity 1 22 0 7 1202 701 282 91 94 chr6 80895655 80896027 -68621010 + MTE2a LTR MaLR 6 376 -3 7 1202 228 372 131 16 chr6 80896946 80897260 -68619777 + L2 LINE L2 2621 2970 -449 7 1202 340 304 50 43 chr6 80897310 80897451 -68619586 - Lx8 LINE L1 -466 7007 6866 7 1202 328 277 42 21 chr6 80898575 80898671 -68618366 + PB1D7 SINE Alu 17 114 -6 7 1202 258 116 0 0 chr6 80898735 80898778 -68618259 + (TAA)n Simple_repeat Simple_repeat 3 45 0 7 1202 818 179 0 7 chr6 80899460 80899606 -68617431 - B1_Mm SINE Alu 0 147 3 7 1202 479 316 56 45 chr6 80899906 80900085 -68616952 - B4 SINE B4 0 292 112 7 1202 1081 302 65 20 chr6 80900086 80900485 -68616552 - MTD LTR MaLR 0 419 3 7 1202 338 324 46 0 chr6 80900488 80900596 -68616441 - B4 SINE B4 -178 114 2 7 1202 401 288 68 40 chr6 80900794 80900918 -68616119 - L1MA9 LINE L1 -257 6055 5928 7 1202 677 79 10 0 chr6 80900918 80901019 -68616018 + (TC)n Simple_repeat Simple_repeat 1 102 0 7 1202 401 288 68 40 chr6 80901019 80901144 -68615893 - L1MA9 LINE L1 -385 5927 5799 7 1202 2086 202 125 18 chr6 80901157 80901555 -68615482 + RLTR20A LTR ERVK 1 451 -90 7 1202 450 0 0 0 chr6 80901555 80901605 -68615432 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1202 2086 202 125 18 chr6 80901605 80901695 -68615342 + RLTR20A LTR ERVK 452 541 0 7 1202 657 292 122 17 chr6 80901695 80902162 -68614875 - L1MA9 LINE L1 -511 5789 5274 7 1202 239 324 33 46 chr6 80902677 80902828 -68614209 + MIR SINE MIR 67 220 -48 7 1202 239 388 41 82 chr6 80903257 80903451 -68613586 - LTR33A LTR ERVL -250 270 85 7 1202 22 0 0 0 chr6 80903873 80903895 -68613142 + AT_rich Low_complexity Low_complexity 1 22 0 7 1202 630 196 172 6 chr6 80904265 80904439 -68612598 + B3 SINE B2 1 203 -13 7 1202 229 211 85 104 chr6 80904741 80904847 -68612190 + MLT1A0 LTR MaLR 26 129 -236 7 1202 499 246 8 0 chr6 80905161 80905279 -68611758 + Lx2 LINE L1 6542 6660 -337 7 1202 1976 118 0 13 chr6 80905279 80905581 -68611456 + L1Md_F2 LINE L1 6277 6574 -8 7 1202 1896 128 50 9 chr6 80905606 80905928 -68611109 + Lx2 LINE L1 6662 6996 -1 7 1202 374 275 15 91 chr6 80906305 80906437 -68610600 - ID_B1 SINE B4 -21 203 82 7 1202 475 333 83 71 chr6 80906725 80906977 -68610060 + MER76 LTR ERVL 6 260 -431 7 1202 516 16 0 0 chr6 80907651 80907712 -68609325 + (CAAAC)n Simple_repeat Simple_repeat 4 64 0 7 1202 235 348 34 51 chr6 80907726 80907844 -68609193 + B1_Mur4 SINE Alu 1 116 -34 7 1202 788 266 38 0 chr6 80907744 80907928 -68609109 + B4 SINE B4 101 291 -1 7 1202 189 0 0 0 chr6 80907965 80907986 -68609051 + (TA)n Simple_repeat Simple_repeat 1 21 0 7 1202 652 318 5 39 chr6 80908653 80908856 -68608181 + B3A SINE B2 3 198 0 7 1202 526 102 99 33 chr6 80909323 80909414 -68607623 + MTC LTR MaLR 1 97 -324 7 1202 2672 199 79 61 chr6 80909414 80910215 -68606822 - L1_Mur2 LINE L1 -3687 2190 1376 7 1202 219 125 0 0 chr6 80910216 80910256 -68606781 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1202 5615 103 78 4 chr6 80910347 80911751 -68605286 - L1_Mus3 LINE L1 -7 6631 5088 7 1202 180 0 0 0 chr6 80912211 80912231 -68604806 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1202 1020 259 24 10 chr6 80912260 80912537 -68604500 + MTC LTR MaLR 107 408 -13 7 1202 438 79 0 0 chr6 80912742 80912805 -68604232 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 1202 1294 113 25 0 chr6 80913968 80914172 -68602865 - L1_Mus3 LINE L1 0 6638 6430 7 1202 8339 39 2 1 chr6 80914310 80915498 -68601539 - L1Md_F2 LINE L1 -1 6581 5393 7 1202 218 265 26 121 chr6 80916081 80916197 -68600840 - B1_Mur1 SINE Alu -30 119 15 7 1202 578 240 6 61 chr6 80916094 80916258 -68600779 - B4 SINE B4 -96 196 42 7 1202 760 228 64 118 chr6 80917140 80917308 -68599729 + B3A SINE B2 1 157 -38 7 1202 378 0 0 0 chr6 80917308 80917350 -68599687 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1202 544 228 64 118 chr6 80917350 80917385 -68599652 + B2_Mm2 SINE B2 158 193 -2 7 1202 563 257 40 0 chr6 80918022 80918170 -68598867 + B3 SINE B2 62 215 -1 7 1202 28 61 0 0 chr6 80918244 80918293 -68598744 + AT_rich Low_complexity Low_complexity 1 49 0 7 1202 219 36 0 0 chr6 80919212 80919240 -68597797 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1202 231 270 0 16 chr6 80919255 80919319 -68597718 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1202 422 345 36 0 chr6 80919321 80919460 -68597577 - RSINE1 SINE B4 -6 159 16 7 1202 180 0 0 0 chr6 80919571 80919591 -68597446 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 7 1202 354 331 54 43 chr6 80919850 80920036 -68597001 + L3 LINE CR1 3179 3366 -1123 7 1202 452 293 108 16 chr6 80920264 80920458 -68596579 - B3 SINE B2 -4 212 1 7 1202 29 0 0 0 chr6 80921174 80921203 -68595834 + AT_rich Low_complexity Low_complexity 1 29 0 7 1202 225 0 0 0 chr6 80921416 80921441 -68595596 + (ATTG)n Simple_repeat Simple_repeat 3 27 0 7 1202 538 246 96 34 chr6 80921445 80921622 -68595415 - B3 SINE B2 -28 188 1 7 1202 238 250 50 50 chr6 80921686 80921787 -68595250 + Charlie13b DNA Charlie 214 314 -198 7 1202 489 289 86 0 chr6 80921941 80922069 -68594968 + B1F2 SINE Alu 5 143 -6 7 1202 1477 262 20 18 chr6 80922090 80922482 -68594555 - Lx6 LINE L1 -6 7454 7062 7 1202 474 33 0 0 chr6 80922629 80922689 -68594348 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1202 582 324 0 20 chr6 80923920 80924071 -68592966 - RSINE1 SINE B4 0 165 18 7 1202 1198 41 0 0 chr6 80924113 80924260 -68592777 + B1_Mus2 SINE Alu 1 147 0 7 1202 413 296 39 82 chr6 80925968 80926174 -68590863 - B3A SINE B2 -1 197 1 7 1202 271 293 0 39 chr6 80926177 80926255 -68590782 - B4 SINE B4 -68 224 150 7 1202 460 308 63 42 chr6 80926285 80926391 -68590646 + L1_Rod LINE L1 3046 3155 -2692 7 1202 3480 123 15 11 chr6 80926391 80926935 -68590102 + Lx3A LINE L1 6436 6981 0 7 1202 460 308 63 42 chr6 80926935 80927062 -68589975 + L1_Rod LINE L1 3156 3277 -2570 7 1202 1458 64 10 5 chr6 80927062 80927266 -68589771 + L1Md_F3 LINE L1 6366 6570 -14 7 1202 460 308 63 42 chr6 80927266 80927441 -68589596 + L1_Rod LINE L1 3278 3464 -2383 7 1202 261 226 19 0 chr6 80927462 80927515 -68589522 - B4 SINE B4 -237 55 2 7 1202 380 365 53 49 chr6 80928336 80928601 -68588436 + B4A SINE B4 13 278 -14 7 1202 315 160 0 0 chr6 80928665 80928740 -68588297 + CT-rich Low_complexity Low_complexity 1 75 0 7 1202 1400 0 0 37 chr6 80929345 80929563 -68587474 + (TTTCC)n Simple_repeat Simple_repeat 1 209 0 7 1202 573 55 0 0 chr6 80929582 80929655 -68587382 + (TCTCC)n Simple_repeat Simple_repeat 3 75 0 7 1202 244 240 0 0 chr6 80929688 80929738 -68587299 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1202 365 278 106 153 chr6 80929738 80929908 -68587129 - RSINE1 SINE B4 0 165 4 7 1202 1128 29 0 0 chr6 80930237 80930288 -68586749 + (TTC)n Simple_repeat Simple_repeat 1 51 0 7 1202 1410 56 0 0 chr6 80930288 80930468 -68586569 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1202 1128 122 0 0 chr6 80930468 80930635 -68586402 + (TTC)n Simple_repeat Simple_repeat 2 168 0 7 1202 342 0 0 0 chr6 80930635 80930673 -68586364 + (TTTC)n Simple_repeat Simple_repeat 1 38 0 7 1202 353 268 26 9 chr6 80930673 80930786 -68586251 - PB1D7 SINE Alu -1 119 5 7 1202 222 0 0 73 chr6 80930848 80930889 -68586148 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 7 1202 406 311 110 29 chr6 80930903 80931039 -68585998 + RSINE1 SINE B4 19 165 0 7 1202 510 17 0 0 chr6 80931048 80931107 -68585930 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 1202 32 26 0 0 chr6 80931169 80931208 -68585829 + AT_rich Low_complexity Low_complexity 1 39 0 8 1202 248 305 0 48 chr6 80931419 80931481 -68585556 - ID4_ SINE ID -2 81 23 8 1202 22 56 0 0 chr6 80932073 80932109 -68584928 + AT_rich Low_complexity Low_complexity 1 36 0 8 1202 525 316 86 0 chr6 80932275 80932414 -68584623 - RSINE1 SINE B4 -12 153 3 8 1202 374 354 35 0 chr6 80933048 80933192 -68583845 + RSINE1 SINE B4 3 151 -14 8 1202 1119 96 0 0 chr6 80933252 80933398 -68583639 - B1_Mus1 SINE Alu -2 146 1 8 1202 549 288 0 0 chr6 80933432 80933550 -68583487 + B3A SINE B2 4 121 -77 8 1202 319 226 55 64 chr6 80933929 80934038 -68582999 - MTD LTR MaLR 0 419 312 8 1202 297 272 39 170 chr6 80934037 80934247 -68582790 - MTD LTR MaLR -218 161 1 8 1202 574 320 5 20 chr6 80934886 80935084 -68581953 + B3A SINE B2 4 198 0 8 1202 279 104 0 0 chr6 80935109 80935157 -68581880 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1202 263 442 18 0 chr6 80935158 80935323 -68581714 - B3A SINE B2 -30 168 1 8 1202 930 291 50 3 chr6 80935323 80935619 -68581418 + MER89 LTR ERV1 250 559 0 8 1202 422 345 31 97 chr6 80936218 80936414 -68580623 + B3 SINE B2 6 188 -28 8 1202 243 298 130 42 chr6 80936556 80936782 -68580255 + B4A SINE B4 31 291 -1 8 1202 1193 96 6 0 chr6 80937136 80937314 -68579723 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 8 1202 506 318 41 77 chr6 80937318 80937512 -68579525 - B3A SINE B2 -4 194 8 8 1202 472 68 27 0 chr6 80939244 80939317 -68577720 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 1202 663 284 0 0 chr6 80939319 80939460 -68577577 - B3A SINE B2 -57 141 1 8 1202 990 319 75 17 chr6 80939748 80940096 -68576941 + MTE2b LTR MaLR 4 371 -8 8 1202 379 366 85 11 chr6 80940275 80940463 -68576574 - B3A SINE B2 0 216 15 8 1202 275 211 0 27 chr6 80940465 80940538 -68576499 - L1MD LINE L1 -1967 4179 4109 8 1202 381 311 154 31 chr6 80940723 80941009 -68576028 - L1MD LINE L1 -2298 3848 3528 8 1202 524 318 56 23 chr6 80941011 80941227 -68575810 - Lx8 LINE L1 -383 7090 6868 8 1202 365 373 70 0 chr6 80941856 80941998 -68575039 + B3A SINE B2 29 180 -18 8 1202 342 0 0 0 chr6 80942000 80942038 -68574999 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1202 939 106 7 27 chr6 80942669 80942815 -68574222 + B1_Mus1 SINE Alu 6 148 0 8 1202 361 271 55 117 chr6 80942673 80942836 -68574201 + B4A SINE B4 94 246 -46 8 1202 204 40 0 0 chr6 80942836 80942861 -68574176 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 8 1202 237 241 0 0 chr6 80942868 80942922 -68574115 + Lx7 LINE L1 7205 7258 -438 8 1202 411 250 8 39 chr6 80942936 80943065 -68573972 + Lx7 LINE L1 7239 7363 -333 8 1202 1232 211 14 56 chr6 80943136 80943505 -68573532 + Lx7 LINE L1 7106 7669 -27 8 1202 224 186 0 44 chr6 80944063 80944108 -68572929 + (CATA)n Simple_repeat Simple_repeat 4 46 0 8 1202 840 291 141 13 chr6 80944184 80944497 -68572540 - ORR1E LTR MaLR -2 357 5 8 1202 986 135 86 0 chr6 80945165 80945328 -68571709 + URR1A DNA MER1_type 50 226 0 8 1202 520 275 49 66 chr6 80945488 80945714 -68571323 + RMER15 LTR ERVL 22 243 -332 8 1202 488 179 8 0 chr6 80945754 80945871 -68571166 + (TG)n Simple_repeat Simple_repeat 1 118 0 8 1202 729 316 33 60 chr6 80945871 80945928 -68571109 - B4A SINE B4 0 292 249 8 1202 1074 39 0 82 chr6 80945928 80946123 -68570914 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 8 1202 729 316 33 60 chr6 80946123 80946365 -68570672 - B4A SINE B4 -44 248 1 8 1202 489 136 12 12 chr6 80946377 80946459 -68570578 + 4.5SRNA scRNA scRNA 13 94 0 8 1202 480 18 0 0 chr6 80948444 80948501 -68568536 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1202 548 62 12 0 chr6 80948880 80948961 -68568076 + (TG)n Simple_repeat Simple_repeat 1 82 0 8 1202 314 350 83 7 chr6 80948963 80949107 -68567930 - B3A SINE B2 -42 156 2 8 1202 818 286 13 22 chr6 80949692 80949917 -68567120 + B4 SINE B4 43 265 -27 8 1202 318 26 0 0 chr6 80949927 80949966 -68567071 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1202 390 69 0 0 chr6 80949966 80950024 -68567013 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1202 404 256 11 126 chr6 80950733 80950760 -68566277 - B2_Mm2 SINE B2 -7 188 164 8 1202 564 73 0 0 chr6 80950760 80950842 -68566195 + (TG)n Simple_repeat Simple_repeat 1 82 0 8 1202 575 256 11 126 chr6 80950842 80950997 -68566040 - B3A SINE B2 -20 178 27 8 1202 549 343 45 0 chr6 80950997 80951198 -68565839 + B3 SINE B2 1 210 -6 8 1202 7101 82 8 18 chr6 80951858 80952908 -68564129 + L1_Mus3 LINE L1 5595 6633 -5 8 1202 772 262 36 123 chr6 80952923 80953336 -68563701 + MTE2a LTR MaLR 1 377 -2 8 1202 6685 88 4 28 chr6 80953872 80955064 -68561973 - L1_Mus2 LINE L1 0 6566 5404 8 1202 4472 124 19 7 chr6 80955947 80956627 -68560410 - Lx LINE L1 0 6654 5967 8 1202 627 281 43 86 chr6 80956755 80956942 -68560095 + B3A SINE B2 8 186 -30 8 1202 21 0 0 0 chr6 80956984 80957005 -68560032 + AT_rich Low_complexity Low_complexity 1 21 0 8 1202 349 392 20 0 chr6 80957278 80957482 -68559555 + Lx8 LINE L1 6979 7186 -287 8 1202 478 340 64 0 chr6 80958627 80958768 -68558269 + RSINE1 SINE B4 2 151 -14 8 1202 510 57 0 0 chr6 80958771 80958841 -68558196 + (CA)n Simple_repeat Simple_repeat 2 71 0 8 1202 26 64 0 0 chr6 80959038 80959085 -68557952 + AT_rich Low_complexity Low_complexity 1 47 0 8 1202 378 309 60 141 chr6 80959138 80959198 -68557839 + B3 SINE B2 1 54 -162 8 1202 1146 82 0 0 chr6 80959198 80959344 -68557693 + B1_Mus2 SINE Alu 2 147 0 8 1202 378 309 60 141 chr6 80959344 80959517 -68557520 + B3 SINE B2 55 215 -1 8 1202 24 32 0 0 chr6 80960463 80960494 -68556543 + AT_rich Low_complexity Low_complexity 1 31 0 8 1202 235 321 45 0 chr6 80960677 80960811 -68556226 - L1MA8 LINE L1 -54 6237 6098 8 1202 481 279 51 48 chr6 80960843 80961159 -68555878 - L1MA8 LINE L1 -272 6019 5703 8 1202 612 297 121 34 chr6 80961306 80961571 -68555466 - B4A SINE B4 0 292 5 8 1202 521 250 66 6 chr6 80961593 80961774 -68555263 - L1MA8 LINE L1 -701 5590 5399 8 1202 18217 47 1 9 chr6 80961810 80964907 -68552130 - L1Md_F2 LINE L1 -7 6575 3505 8 1202 37443 23 3 8 chr6 80964917 80971452 -68545585 - L1Md_A LINE L1 -285 6297 1 8 1202 21 57 0 0 chr6 80971564 80971599 -68545438 + AT_rich Low_complexity Low_complexity 1 35 0 8 1202 28 0 0 0 chr6 80972281 80972309 -68544728 + AT_rich Low_complexity Low_complexity 1 28 0 8 1202 465 342 82 48 chr6 80972434 80972704 -68544333 - B4A SINE B4 -10 282 4 8 1202 222 346 77 0 chr6 80972716 80972794 -68544243 - B3A SINE B2 -109 89 6 8 1202 304 338 66 22 chr6 80972832 80972968 -68544069 - RSINE1 SINE B4 -20 145 4 8 1202 35 63 0 0 chr6 80973992 80974055 -68542982 + AT_rich Low_complexity Low_complexity 1 63 0 8 1202 246 128 0 0 chr6 80974055 80974094 -68542943 + (TA)n Simple_repeat Simple_repeat 2 40 0 8 1202 3576 15 0 0 chr6 80974183 80974579 -68542458 + MTA_Mm LTR MaLR 1 396 0 8 1202 926 151 148 26 chr6 80974610 80974839 -68542198 - Lx3B LINE L1 0 7009 6718 8 1202 27 29 0 0 chr6 80974839 80974873 -68542164 + AT_rich Low_complexity Low_complexity 1 34 0 8 1202 634 292 108 0 chr6 80974904 80975164 -68541873 + B4A SINE B4 1 288 -4 8 1202 345 317 10 91 chr6 80975569 80975767 -68541270 - B3A SINE B2 -15 183 2 8 1202 798 233 66 28 chr6 80976311 80976492 -68540545 - B3 SINE B2 -28 188 1 8 1202 225 0 0 0 chr6 80976893 80976918 -68540119 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1202 22 0 0 0 chr6 80976918 80976940 -68540097 + AT_rich Low_complexity Low_complexity 1 22 0 8 1202 264 204 91 200 chr6 80978522 80978632 -68538405 - B4A SINE B4 0 292 195 8 1202 4046 65 0 2 chr6 80978912 80979419 -68537618 + L1_Mus2 LINE L1 6061 6566 0 8 1202 967 269 5 10 chr6 80979453 80979684 -68537353 - ORR1E LTR MaLR -126 233 6 8 1202 681 109 194 7 chr6 80979997 80980136 -68536901 + RLTR31B_Mm LTR ERVK 1 165 -392 8 1202 1021 92 0 41 chr6 80980139 80980286 -68536751 + B1_Mus2 SINE Alu 2 142 -5 8 1202 3720 32 7 0 chr6 80980334 80980767 -68536270 - RLTR10C LTR ERVK 0 436 1 8 1202 7168 43 2 51 chr6 80980767 80981751 -68535286 - MMERVK10C-int LTR ERVK 0 7581 6646 8 1202 8242 42 1 0 chr6 80981737 80982757 -68534280 - MMERVK10C-int LTR ERVK -1771 5810 4790 8 1202 1738 32 0 0 chr6 80982750 80982970 -68534067 - MMERVK10C-int LTR ERVK -3838 3743 3524 8 1202 1837 51 0 0 chr6 80982949 80983185 -68533852 - RLTR10-int LTR ERVK -1100 887 652 8 1202 309 111 0 0 chr6 80983188 80983233 -68533804 - RLTR10-int LTR ERVK -6405 137 93 8 1202 333 172 0 44 chr6 80983233 80983324 -68533713 + T-rich Low_complexity Low_complexity 3 89 0 8 1202 1990 49 11 4 chr6 80983407 80983672 -68533365 - MMERVK10C-int LTR ERVK -7314 267 1 8 1202 3573 39 9 9 chr6 80983672 80984108 -68532929 - RLTR10C LTR ERVK 0 436 1 8 1202 1009 199 25 36 chr6 80984108 80984436 -68532601 + RLTR31A_Mm LTR ERVK 216 557 0 8 1202 938 90 27 14 chr6 80984666 80984813 -68532224 - BGLII LTR ERVK 0 421 273 8 1202 370 74 0 0 chr6 80984813 80984867 -68532170 - L1Md_F3 LINE L1 -629 5955 5902 8 1202 2081 32 25 11 chr6 80984867 80985150 -68531887 + IAPLTR2a LTR ERVK 1 287 -124 8 1202 1535 59 2 0 chr6 80985150 80985463 -68531574 - IAPEz-int LTR ERVK -6075 406 168 8 1202 248 302 0 0 chr6 80985463 80985516 -68531521 - RLTR27 LTR ERVK -34 275 223 8 1202 955 104 25 85 chr6 80985516 80985715 -68531322 - IAPEz-int LTR ERVK -6286 195 9 8 1202 3511 36 14 91 chr6 80985716 80986231 -68530806 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1202 4461 55 0 0 chr6 80986257 80986835 -68530202 - L1_Mm LINE L1 0 5883 5306 8 1202 947 65 6 49 chr6 80986837 80986999 -68530038 + L1Md_F2 LINE L1 6428 6582 0 8 1202 1776 83 50 11 chr6 80987002 80987281 -68529756 - BGLII LTR ERVK -131 290 1 8 1202 294 29 0 0 chr6 80988565 80988600 -68528437 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1202 261 0 0 0 chr6 80988662 80988691 -68528346 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 8 1202 1012 97 0 7 chr6 80988693 80988828 -68528209 - B1_Mus2 SINE Alu -12 135 2 8 1202 230 362 0 0 chr6 80989093 80989162 -68527875 - tRNA-Ala-GCY_ tRNA tRNA -6 69 1 8 1202 29 28 0 0 chr6 80989429 80989465 -68527572 + AT_rich Low_complexity Low_complexity 1 36 0 8 1202 369 0 0 0 chr6 80989603 80989644 -68527393 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1202 24 0 0 0 chr6 80989899 80989923 -68527114 + AT_rich Low_complexity Low_complexity 1 24 0 9 1202 456 318 120 15 chr6 80990631 80990890 -68526147 - B4A SINE B4 -6 286 1 9 1202 233 182 18 0 chr6 80991590 80991645 -68525392 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 1202 396 40 0 0 chr6 80992400 80992450 -68524587 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1202 4216 75 5 3 chr6 80992578 80993144 -68523893 + Lx3_Mus LINE L1 6442 7008 -1 9 1202 356 254 0 16 chr6 80993402 80993526 -68523511 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 9 1202 317 316 101 22 chr6 80993558 80993836 -68523201 - Lx7 LINE L1 -1803 5893 5594 9 1202 7001 142 16 8 chr6 80993950 80995138 -68521899 + RMER12B LTR ERVK 1 1197 -207 9 1202 486 0 0 0 chr6 80995138 80995192 -68521845 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 1202 7001 204 77 1520 chr6 80995192 80995313 -68521724 + RMER12B LTR ERVK 1198 1370 -34 9 1202 25 31 0 0 chr6 80995550 80995582 -68521455 + AT_rich Low_complexity Low_complexity 1 32 0 9 1202 44 0 0 0 chr6 80995622 80995666 -68521371 + AT_rich Low_complexity Low_complexity 1 44 0 9 1202 2335 197 82 15 chr6 80996152 80996688 -68520349 - RMER15 LTR ERVL 0 575 4 9 1202 269 384 92 56 chr6 80997780 80998086 -68518951 + MLT1J LTR MaLR 51 367 -145 9 1202 336 275 62 104 chr6 80998746 80998957 -68518080 - B3 SINE B2 -13 203 2 9 1202 22 56 0 0 chr6 80999380 80999416 -68517621 + AT_rich Low_complexity Low_complexity 1 36 0 9 1202 233 253 52 26 chr6 80999519 80999596 -68517441 - L2a LINE L2 -237 3189 3111 9 1202 4820 95 7 3 chr6 81000279 81000966 -68516071 + L1_Mus4 LINE L1 5945 6634 -2 1 1202 567 107 0 0 chr6 81001360 81001444 -68515593 + (TC)n Simple_repeat Simple_repeat 1 84 0 2 1202 447 52 0 0 chr6 81001445 81001503 -68515534 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1202 189 352 56 28 chr6 81001620 81001728 -68515309 - L2a LINE L2 -287 3139 3029 4 1202 512 291 45 0 chr6 81002319 81002453 -68514584 + B1F1 SINE Alu 2 141 -8 5 150 27 0 0 0 chr6 81002490 81002517 -68514520 + AT_rich Low_complexity Low_complexity 1 27 0 6 1203 24 53 0 0 chr6 81002597 81002635 -68514402 + AT_rich Low_complexity Low_complexity 1 38 0 7 1203 25 31 0 0 chr6 81002682 81002714 -68514323 + AT_rich Low_complexity Low_complexity 1 32 0 8 1203 2112 115 9 6 chr6 81004279 81004602 -68512435 + Lx LINE L1 6326 6649 -5 9 1203 514 305 42 21 chr6 81004743 81004887 -68512150 + RSINE1 SINE B4 3 149 -16 1 1203 504 32 0 0 chr6 81004887 81004949 -68512088 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1203 342 0 0 0 chr6 81004949 81004986 -68512051 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1203 219 69 0 0 chr6 81004987 81005016 -68512021 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1203 2249 214 18 20 chr6 81005016 81005507 -68511530 + Lx5 LINE L1 6543 7032 -18 1 1203 227 79 0 26 chr6 81005507 81005546 -68511491 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1 1203 709 292 18 58 chr6 81005928 81006153 -68510884 + B3A SINE B2 1 216 0 1 1203 344 344 111 33 chr6 81006670 81006941 -68510096 + B4A SINE B4 1 292 0 1 1203 205 219 14 14 chr6 81006941 81007015 -68510022 + (CATA)n Simple_repeat Simple_repeat 1 74 0 1 1203 683 295 57 39 chr6 81008414 81008693 -68508344 - B4A SINE B4 -6 286 3 1 1203 357 24 0 0 chr6 81009214 81009256 -68507781 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 2 1203 1296 0 0 0 chr6 81009256 81009400 -68507637 + (GGGAA)n Simple_repeat Simple_repeat 3 146 0 2 1203 615 190 0 0 chr6 81009972 81010114 -68506923 + (CA)n Simple_repeat Simple_repeat 1 142 0 2 1203 1212 248 37 17 chr6 81010565 81010860 -68506177 - ORR1D2 LTR MaLR -68 302 2 2 1203 23 0 0 0 chr6 81011776 81011799 -68505238 + AT_rich Low_complexity Low_complexity 1 23 0 2 1203 21 57 0 0 chr6 81011853 81011888 -68505149 + AT_rich Low_complexity Low_complexity 1 35 0 2 1203 856 215 27 71 chr6 81012146 81012371 -68504666 + URR1B DNA MER1_type 10 224 -1 2 1203 380 279 48 78 chr6 81012371 81012400 -68504637 - CYRA11_Mm Unknown Y-chromosome -449 168 146 2 1203 213 189 0 0 chr6 81012945 81012982 -68504055 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1203 1055 256 86 23 chr6 81013216 81013564 -68503473 - ORR1D2 LTR MaLR 0 370 1 2 1203 814 199 205 153 chr6 81014224 81014462 -68502575 - MT2A LTR ERVL 0 601 166 3 1203 2274 131 142 19 chr6 81014462 81014891 -68502146 - RLTR45 LTR ERVK 0 482 1 3 1203 814 192 204 181 chr6 81014891 81015124 -68501913 - MT2A LTR ERVL -368 165 4 3 1203 659 122 8 0 chr6 81015615 81015746 -68501291 + (TC)n Simple_repeat Simple_repeat 2 133 0 3 1203 242 56 0 27 chr6 81015793 81015830 -68501207 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 1203 401 313 103 11 chr6 81016533 81016717 -68500320 - Lx8 LINE L1 -149 7324 7124 3 1203 327 238 0 59 chr6 81016717 81016802 -68500235 + Lx8 LINE L1 7026 7105 -368 3 1203 288 0 0 0 chr6 81017037 81017069 -68499968 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1203 412 311 31 13 chr6 81017230 81017412 -68499625 - MTD LTR MaLR -78 341 120 3 1203 5933 126 23 7 chr6 81017413 81018357 -68498680 + Lx2A LINE L1 6041 6999 -9 3 1203 269 290 0 14 chr6 81018541 81018611 -68498426 + CT-rich Low_complexity Low_complexity 1 69 0 3 1203 215 115 0 37 chr6 81018811 81018865 -68498172 + T-rich Low_complexity Low_complexity 3 54 0 3 1203 646 310 68 74 chr6 81018865 81019161 -68497876 - MTEa LTR MaLR -65 314 21 4 1203 1109 307 23 49 chr6 81019286 81019632 -68497405 + ORR1E LTR MaLR 19 355 -4 4 1203 243 170 0 0 chr6 81020402 81020449 -68496588 + T-rich Low_complexity Low_complexity 1 47 0 4 1203 295 131 14 28 chr6 81021029 81021067 -68495970 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 1203 521 313 10 20 chr6 81021067 81021266 -68495771 + B3A SINE B2 2 198 0 4 1203 295 131 14 28 chr6 81021266 81021298 -68495739 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 4 1203 21 36 0 0 chr6 81021405 81021433 -68495604 + AT_rich Low_complexity Low_complexity 1 28 0 4 1203 280 348 37 37 chr6 81021527 81021691 -68495346 - MER5B DNA MER1_type -6 172 9 4 1203 303 306 19 72 chr6 81023093 81023236 -68493801 - B1F2 SINE Alu 0 149 12 4 1203 21 0 0 0 chr6 81023598 81023619 -68493418 + AT_rich Low_complexity Low_complexity 1 21 0 4 1203 418 300 20 76 chr6 81023678 81023944 -68493093 + Lx9 LINE L1 6228 6503 -1141 5 1203 229 133 67 0 chr6 81024032 81024107 -68492930 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1203 724 282 115 0 chr6 81024131 81024400 -68492637 + Lx9 LINE L1 6907 7206 -438 5 1203 1113 125 0 0 chr6 81024477 81024888 -68492149 + (TG)n Simple_repeat Simple_repeat 1 411 0 5 1203 323 271 139 29 chr6 81025534 81025671 -68491366 - Lx8 LINE L1 -236 7237 7086 5 1203 285 359 13 29 chr6 81025677 81025915 -68491122 - Lx7 LINE L1 -676 7020 6787 5 1203 415 208 75 20 chr6 81025936 81026083 -68490954 + RMER17C LTR ERVK 123 277 -133 5 1203 741 278 142 76 chr6 81026089 81026498 -68490539 - Lx8 LINE L1 -686 6787 6352 5 1203 2482 111 76 5 chr6 81026672 81027054 -68489983 + RLTR9E LTR ERVK 1 409 0 5 1203 376 270 152 26 chr6 81027317 81027498 -68489539 - ORR1D2 LTR MaLR 0 374 165 5 1203 328 296 143 36 chr6 81027546 81027686 -68489351 + B4 SINE B4 128 282 -10 5 1203 192 125 0 0 chr6 81027690 81027722 -68489315 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1203 282 125 0 0 chr6 81027722 81027770 -68489267 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1203 799 116 14 7 chr6 81027775 81027914 -68489123 + (GGGA)n Simple_repeat Simple_repeat 1 140 0 6 1203 42 36 0 0 chr6 81027962 81028018 -68489019 + AT_rich Low_complexity Low_complexity 1 56 0 6 1203 754 318 78 18 chr6 81028169 81028566 -68488471 - Lx8 LINE L1 -93 7380 6960 6 1203 607 262 249 6 chr6 81028932 81029266 -68487771 - MTD LTR MaLR 0 419 5 6 1203 1282 246 32 104 chr6 81029541 81029907 -68487130 + MTE2a LTR MaLR 10 376 -43 6 1203 660 201 41 14 chr6 81029907 81030053 -68486984 - B1_Mur4 SINE Alu 0 150 1 6 1203 1282 234 30 108 chr6 81030053 81030111 -68486926 + MTE2a LTR MaLR 339 379 0 6 1203 819 255 29 19 chr6 81030324 81030532 -68486505 - B3 SINE B2 0 216 7 6 1203 22 0 0 0 chr6 81031116 81031138 -68485899 + AT_rich Low_complexity Low_complexity 1 22 0 6 1203 197 140 0 23 chr6 81031142 81031186 -68485851 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1203 400 310 6 77 chr6 81031201 81031369 -68485668 - B3A SINE B2 -16 182 27 7 1203 218 186 0 0 chr6 81031429 81031472 -68485565 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 1203 1150 68 7 0 chr6 81031474 81031620 -68485417 - B1_Mus1 SINE Alu 0 148 2 7 1203 185 188 37 12 chr6 81031797 81031878 -68485159 + (TA)n Simple_repeat Simple_repeat 1 83 0 7 1203 21 0 0 0 chr6 81033027 81033048 -68483989 + AT_rich Low_complexity Low_complexity 1 21 0 7 1203 512 313 124 46 chr6 81033225 81033747 -68483290 - HAL1 LINE L1 -1125 1382 820 7 1203 412 272 130 80 chr6 81033860 81034184 -68482853 - MLT2C1 LTR ERVL -57 340 1 7 1203 21 0 0 0 chr6 81035450 81035471 -68481566 + AT_rich Low_complexity Low_complexity 1 21 0 7 1203 2827 117 24 49 chr6 81035530 81036024 -68481013 + RLTR45 LTR ERVK 1 482 0 7 1203 333 0 0 0 chr6 81036079 81036116 -68480921 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1203 1207 262 85 37 chr6 81036421 81036773 -68480264 - ORR1D2 LTR MaLR -1 369 1 8 1203 832 295 60 121 chr6 81036887 81037284 -68479753 + MTE2a LTR MaLR 1 373 -6 8 1203 6683 142 26 24 chr6 81038121 81040173 -68476864 - Lx LINE L1 0 6654 4610 8 1203 485 269 24 102 chr6 81040173 81040339 -68476698 + B3A SINE B2 42 194 -4 8 1203 2085 88 0 42 chr6 81040652 81040962 -68476075 - L1_Mus1 LINE L1 -1 6566 6270 8 1203 2531 53 0 45 chr6 81041483 81041820 -68475217 + RLTRETN_Mm LTR ERVK 1 322 0 8 1203 908 107 7 7 chr6 81042380 81042530 -68474507 + L1Md_F2 LINE L1 6423 6572 -10 8 1203 702 55 0 0 chr6 81043339 81043430 -68473607 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 8 1203 7653 32 0 0 chr6 81044039 81044976 -68472061 - L1Md_T LINE L1 0 6582 5646 8 1203 833 250 76 22 chr6 81045787 81046012 -68471025 + Lx8 LINE L1 7081 7317 -156 8 1203 187 55 26 53 chr6 81046030 81046068 -68470969 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 9 1203 306 295 0 51 chr6 81046082 81046200 -68470837 + Lx8 LINE L1 7357 7468 -5 8 1203 636 315 0 63 chr6 81046242 81046432 -68470605 + B3A SINE B2 6 183 -15 9 1203 282 29 0 0 chr6 81046444 81046479 -68470558 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 9 1203 654 75 0 0 chr6 81046527 81046620 -68470417 + (TC)n Simple_repeat Simple_repeat 1 93 0 9 1203 270 0 0 0 chr6 81046620 81046649 -68470388 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1203 399 83 0 0 chr6 81046682 81046742 -68470295 + (TC)n Simple_repeat Simple_repeat 2 61 0 9 1203 210 37 0 0 chr6 81046742 81046769 -68470268 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 1203 26 0 0 0 chr6 81046893 81046919 -68470118 + AT_rich Low_complexity Low_complexity 1 26 0 9 1203 196 114 22 43 chr6 81047125 81047171 -68469866 + GA-rich Low_complexity Low_complexity 1 45 0 9 1203 288 132 12 116 chr6 81047192 81047272 -68469765 + ORR1D2 LTR MaLR 1 70 -289 9 1203 269 380 50 56 chr6 81047258 81047456 -68469581 + MTE-int LTR MaLR 819 1015 -565 1 1203 263 272 12 24 chr6 81047546 81047629 -68469408 + CT-rich Low_complexity Low_complexity 5 86 0 1 1203 462 271 67 17 chr6 81047732 81047852 -68469185 - RSINE1 SINE B4 -37 128 3 1 1203 434 314 16 8 chr6 81047855 81047980 -68469057 + MTE-int LTR MaLR 1420 1545 -35 1 1203 184 114 22 43 chr6 81048147 81048193 -68468844 + GA-rich Low_complexity Low_complexity 1 45 0 1 1203 408 40 0 0 chr6 81048775 81048825 -68468212 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1203 322 376 0 0 chr6 81048836 81048945 -68468092 - B3A SINE B2 -66 132 24 1 1203 549 44 0 0 chr6 81049182 81049250 -68467787 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1203 2913 72 40 0 chr6 81049351 81049754 -68467283 - BGLII LTR ERVK 0 421 3 1 1203 610 285 80 29 chr6 81050233 81050508 -68466529 + B4 SINE B4 2 290 -2 1 1203 574 13 27 0 chr6 81050616 81050691 -68466346 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 1203 1071 256 28 6 chr6 81050803 81051121 -68465916 + L1MA5 LINE L1 5975 6299 -1 1 1203 211 263 66 66 chr6 81051395 81051456 -68465581 - BC1_Mm scRNA scRNA -73 79 19 1 1203 397 278 101 38 chr6 81051481 81051814 -68465223 - L1MA4 LINE L1 -10 6290 5953 1 1203 193 57 28 28 chr6 81052035 81052071 -68464966 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 1 1203 23 0 0 0 chr6 81052225 81052248 -68464789 + AT_rich Low_complexity Low_complexity 1 23 0 1 1203 450 0 0 0 chr6 81052480 81052530 -68464507 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 1 1203 362 337 0 0 chr6 81052624 81052722 -68464315 + B3A SINE B2 1 98 -100 1 1203 423 0 0 0 chr6 81052724 81052771 -68464266 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1203 633 157 0 0 chr6 81052771 81052905 -68464132 + (TA)n Simple_repeat Simple_repeat 1 134 0 1 1203 351 227 20 40 chr6 81052905 81053006 -68464031 + B3A SINE B2 100 198 0 1 1203 387 245 83 28 chr6 81053058 81053167 -68463870 + PB1D10 SINE Alu 1 115 -2 1 1203 262 304 166 54 chr6 81053179 81053384 -68463653 - MIRm SINE MIR -9 267 40 1 1203 635 128 1 5 chr6 81053549 81053655 -68463382 - B2_Mm2 SINE B2 -112 104 2 1 1203 489 245 85 35 chr6 81053658 81053832 -68463205 + Lx2B LINE L1 6824 6987 -13 1 1203 432 0 0 0 chr6 81054124 81054172 -68462865 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1203 782 149 0 7 chr6 81054667 81054816 -68462221 + CT-rich Low_complexity Low_complexity 3 150 0 1 1203 432 51 0 0 chr6 81054829 81054888 -68462149 + (TCTCTG)n Simple_repeat Simple_repeat 6 64 0 1 1203 361 335 0 0 chr6 81054889 81055065 -68461972 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1203 566 325 6 0 chr6 81055067 81055227 -68461810 - RSINE1 SINE B4 -2 163 3 1 1203 1368 238 86 11 chr6 81055814 81056162 -68460875 + MTD LTR MaLR 26 399 -20 1 1203 21 0 0 0 chr6 81056607 81056628 -68460409 + GC_rich Low_complexity Low_complexity 1 21 0 1 1203 1158 8 0 0 chr6 81056855 81056986 -68460051 + (GGGAA)n Simple_repeat Simple_repeat 2 132 0 1 1203 550 278 35 63 chr6 81057088 81057230 -68459807 + RSINE1 SINE B4 8 145 -20 1 1203 414 0 0 0 chr6 81057239 81057285 -68459752 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1203 1798 182 6 6 chr6 81058293 81058619 -68458418 - ORR1A3 LTR MaLR 0 326 1 1 1203 823 267 57 64 chr6 81058619 81058899 -68458138 + ORR1E LTR MaLR 80 357 -2 1 1203 1606 180 125 6 chr6 81058981 81059300 -68457737 + ORR1B2 LTR MaLR 1 357 -10 1 1203 511 338 0 8 chr6 81059305 81059439 -68457598 + RSINE1 SINE B4 21 153 -12 1 1203 513 309 10 21 chr6 81059590 81059782 -68457255 + MER2 DNA MER2_type 90 279 -66 1 1203 190 223 21 11 chr6 81060645 81060740 -68456297 + (CAGAGA)n Simple_repeat Simple_repeat 1 96 0 1 1203 934 243 61 117 chr6 81060830 81061297 -68455740 + RMER19C LTR ERVK 1 437 -300 1 1203 711 120 17 8 chr6 81061323 81061441 -68455596 - RMER19C LTR ERVK -492 119 1 1 1203 508 266 60 14 chr6 81061560 81061732 -68455305 - B3 SINE B2 -21 177 2 1 1203 293 319 93 46 chr6 81061953 81062591 -68454446 - L1MEf LINE L1 -4471 2162 1485 1 1203 440 224 48 20 chr6 81062760 81062906 -68454131 + Lx9 LINE L1 7369 7518 -126 1 1203 381 284 67 38 chr6 81063040 81063249 -68453788 - LTR37B LTR ERV1 -53 415 201 1 1203 1013 306 123 9 chr6 81063283 81063706 -68453331 + RMER5 LTR ERV1 6 476 -58 1 1203 508 317 26 99 chr6 81063799 81064111 -68452926 - B4 SINE B4 -3 289 1 1 1203 1193 273 56 28 chr6 81065487 81065536 -68451501 - MT2A LTR ERVL -3 530 473 1 1203 540 0 0 0 chr6 81065536 81065596 -68451441 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1203 267 54 0 0 chr6 81065602 81065639 -68451398 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1203 501 32 0 0 chr6 81065639 81065701 -68451336 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1203 1193 273 56 28 chr6 81065701 81066038 -68450999 - MT2A LTR ERVL -66 467 127 1 1203 5390 98 3 1 chr6 81066412 81067185 -68449852 - Lx3B LINE L1 -299 5587 4814 1 1203 7846 132 37 7 chr6 81067160 81068452 -68448585 + Lx3B LINE L1 5639 6969 -4 1 1203 486 322 16 48 chr6 81068653 81068839 -68448198 + B3A SINE B2 1 180 -18 1 1203 204 135 0 0 chr6 81068971 81069008 -68448029 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 1 1203 295 286 45 45 chr6 81070524 81070656 -68446381 + MTD LTR MaLR 6 137 -282 1 1203 236 53 26 0 chr6 81070688 81070726 -68446311 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1203 1115 69 7 0 chr6 81070746 81070890 -68446147 - B1_Mus1 SINE Alu -2 146 2 1 1203 1290 113 0 0 chr6 81070892 81071086 -68445951 - MusHAL1 LINE L1 -1449 1263 1070 1 1203 277 0 0 0 chr6 81071100 81071139 -68445898 + L1_Mus1 LINE L1 6527 6565 -2 1 1203 48 77 0 0 chr6 81071139 81071243 -68445794 + AT_rich Low_complexity Low_complexity 1 104 0 1 1203 821 281 86 21 chr6 81071243 81071523 -68445514 + MTE2a LTR MaLR 82 379 0 1 1203 1466 202 105 6 chr6 81071937 81072260 -68444777 - MTC LTR MaLR 0 421 67 1 1203 6026 32 1 0 chr6 81072356 81073074 -68443963 - L1Md_A LINE L1 -1 6581 5863 1 1203 419 174 0 0 chr6 81073074 81073143 -68443894 - MTC LTR MaLR -352 69 1 1 1203 24 0 0 0 chr6 81073383 81073407 -68443630 + AT_rich Low_complexity Low_complexity 1 24 0 1 1203 724 316 58 61 chr6 81073660 81073987 -68443050 - MTD LTR MaLR -93 326 1 1 1203 740 303 49 79 chr6 81074243 81074508 -68442529 + B4 SINE B4 36 292 0 1 1203 258 244 0 0 chr6 81074508 81074590 -68442447 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1203 287 354 39 29 chr6 81074899 81075103 -68441934 + ERVL-int LTR ERVL 3667 3872 -1795 1 1203 688 289 10 30 chr6 81075363 81075563 -68441474 + B3A SINE B2 3 198 0 1 1203 888 225 44 20 chr6 81075590 81075794 -68441243 - B3 SINE B2 -7 209 1 1 1203 475 330 54 5 chr6 81075900 81076104 -68440933 + ERVL-int LTR ERVL 4271 4484 -1273 1 1203 532 335 20 36 chr6 81076683 81076878 -68440159 - B3A SINE B2 -1 197 6 1 1203 778 297 122 24 chr6 81077705 81078040 -68438997 + ORR1D2 LTR MaLR 1 368 -2 1 1203 233 328 84 25 chr6 81078494 81078506 -68438531 + B1F SINE Alu 14 139 -10 1 1203 334 292 37 9 chr6 81078506 81078613 -68438424 + ID_B1 SINE B4 105 214 -10 1 1203 15464 20 0 0 chr6 81078982 81080806 -68436231 - L1_Mm LINE L1 -1273 4610 2787 1 1203 6396 11 0 0 chr6 81080801 81081528 -68435509 + L1Md_T LINE L1 4858 5584 -299 1 1203 8314 39 0 0 chr6 81081530 81082523 -68434514 + L1Md_T LINE L1 5587 6579 -3 1 1203 1104 112 27 4 chr6 81083030 81083293 -68433744 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 1 1203 1280 279 88 72 chr6 81084060 81084605 -68432432 + RMER15 LTR ERVL 22 575 0 1 1203 1210 48 7 0 chr6 81084858 81085005 -68432032 + B1_Mus1 SINE Alu 1 148 0 1 1203 544 316 65 23 chr6 81085535 81085749 -68431288 + B4A SINE B4 70 292 0 1 1203 234 255 20 0 chr6 81085749 81085800 -68431237 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1203 390 185 0 0 chr6 81085919 81086000 -68431037 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 1203 9071 100 3 5 chr6 81086002 81088043 -68428994 - L1_Mus1 LINE L1 -6 6561 4519 1 1203 24598 67 97 11 chr6 81088038 81090422 -68426615 - L1Md_A LINE L1 -3 6579 3673 1 1203 7055 58 21 7 chr6 81090422 81091338 -68425699 + RLTR13B3 LTR ERVK 1 929 0 1 1203 24598 90 161 18 chr6 81091338 81093828 -68423209 - L1Md_A LINE L1 -2211 3672 1104 1 1203 3745 78 0 14 chr6 81093828 81094332 -68422705 - L1Md_F2 LINE L1 -12 6570 6074 1 1203 4625 143 49 12 chr6 81094332 81095038 -68421999 - L1Md_A LINE L1 -5513 1103 366 1 1203 504 333 14 93 chr6 81095737 81095782 -68421255 - B3A SINE B2 0 198 156 1 1203 351 0 0 0 chr6 81095782 81095821 -68421216 + (TAG)n Simple_repeat Simple_repeat 2 40 0 1 1203 504 333 14 93 chr6 81095821 81095990 -68421047 - B3A SINE B2 -43 155 1 1 1203 252 227 129 40 chr6 81096011 81096135 -68420902 - L1MD3 LINE L1 -215 7780 7646 1 1203 583 324 80 41 chr6 81096266 81096604 -68420433 + MLT1A1 LTR MaLR 16 366 -42 1 1203 239 309 36 0 chr6 81096624 81096708 -68420329 - L1MD3 LINE L1 -439 7346 7260 1 1203 1348 296 3 3 chr6 81096709 81097031 -68420006 + MTE2b LTR MaLR 1 322 -57 1 1203 769 340 74 24 chr6 81097071 81097408 -68419629 + MTE-int LTR MaLR 11 364 -1216 1 1203 1495 264 30 20 chr6 81097407 81097809 -68419228 - MTD LTR MaLR -13 406 1 1 1203 807 299 20 50 chr6 81097856 81098159 -68418878 + MTE2b LTR MaLR 82 375 -4 1 1203 288 278 82 14 chr6 81099010 81099191 -68417846 + L1MA4 LINE L1 5733 5923 -377 1 1203 24 0 0 0 chr6 81099554 81099578 -68417459 + AT_rich Low_complexity Low_complexity 1 24 0 1 1203 4193 126 29 5 chr6 81099588 81100240 -68416797 - Lx LINE L1 -7 6647 5980 1 1203 27 0 0 0 chr6 81100734 81100761 -68416276 + AT_rich Low_complexity Low_complexity 1 27 0 1 1203 378 0 0 0 chr6 81100820 81100862 -68416175 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1203 302 305 40 130 chr6 81101570 81101586 -68415451 - B2_Mm2 SINE B2 -26 169 155 2 1203 534 99 0 0 chr6 81101586 81101677 -68415360 + (TG)n Simple_repeat Simple_repeat 1 91 0 2 1203 557 302 19 58 chr6 81101677 81101837 -68415200 - B3A SINE B2 -38 160 9 2 1203 195 38 113 0 chr6 81101962 81102015 -68415022 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 1203 505 283 0 0 chr6 81102555 81102668 -68414369 - B1_Mur4 SINE Alu -37 113 1 2 1203 6545 77 3 2 chr6 81102816 81103681 -68413356 - L1_Mus1 LINE L1 0 6567 5702 2 1203 1075 290 102 24 chr6 81103746 81104237 -68412800 + MT2A LTR ERVL 5 533 0 2 1203 372 202 143 9 chr6 81105034 81105139 -68411898 + B1F1 SINE Alu 28 146 -3 2 1203 239 93 0 23 chr6 81105151 81105195 -68411842 + (TAA)n Simple_repeat Simple_repeat 3 45 0 2 1203 580 283 36 0 chr6 81105471 81105609 -68411428 + B3A SINE B2 3 145 -53 2 1203 1587 183 4 4 chr6 81105700 81105969 -68411068 + Lx7 LINE L1 6773 7041 -655 2 1203 294 73 0 0 chr6 81106139 81106180 -68410857 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1203 213 39 0 0 chr6 81106206 81106232 -68410805 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1203 726 254 35 0 chr6 81106453 81106650 -68410387 + Lx7 LINE L1 7175 7378 -318 2 1203 900 238 92 45 chr6 81106698 81107033 -68410004 + Lx7 LINE L1 7346 7696 0 2 1203 26 64 0 0 chr6 81107403 81107450 -68409587 + AT_rich Low_complexity Low_complexity 1 47 0 2 1203 21 0 0 0 chr6 81107571 81107592 -68409445 + AT_rich Low_complexity Low_complexity 1 21 0 2 1203 245 175 0 0 chr6 81107602 81107642 -68409395 + B4 SINE B4 8 47 -245 2 1203 207 403 13 13 chr6 81107808 81107964 -68409073 + (CATG)n Simple_repeat Simple_repeat 3 158 0 2 1203 469 329 42 0 chr6 81108335 81108478 -68408559 + B3A SINE B2 45 193 -5 2 1203 218 176 43 29 chr6 81109424 81109494 -68407543 + (TA)n Simple_repeat Simple_repeat 1 71 0 2 1203 249 167 0 0 chr6 81109507 81109549 -68407488 - ORR1D2 LTR MaLR -2 368 327 2 1203 201 94 0 0 chr6 81109970 81110002 -68407035 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1203 29 0 0 0 chr6 81110036 81110065 -68406972 + AT_rich Low_complexity Low_complexity 1 29 0 2 1203 407 276 48 8 chr6 81110747 81110871 -68406166 - RSINE1 SINE B4 -29 136 8 2 1203 664 297 98 25 chr6 81111406 81111651 -68405386 - B4 SINE B4 -20 272 10 2 1203 541 280 178 71 chr6 81112402 81112740 -68404297 - ORR1D1 LTR MaLR 0 374 1 2 1203 603 88 0 0 chr6 81112773 81112864 -68404173 + (TG)n Simple_repeat Simple_repeat 1 91 0 2 1203 586 296 0 0 chr6 81112871 81112996 -68404041 - RSINE1 SINE B4 -29 136 12 2 1203 1162 285 22 68 chr6 81113159 81113524 -68403513 - ORR1E LTR MaLR -11 348 1 2 1203 584 329 25 6 chr6 81114263 81114399 -68402638 + RSINE1 SINE B4 4 143 -22 2 1203 621 92 0 0 chr6 81114399 81114497 -68402540 + (TG)n Simple_repeat Simple_repeat 1 98 0 2 1203 584 329 25 6 chr6 81114497 81114519 -68402518 + RSINE1 SINE B4 144 165 0 2 1203 830 248 100 118 chr6 81114993 81115332 -68401705 + MTE2a LTR MaLR 1 333 -46 2 1203 231 236 0 0 chr6 81115707 81115779 -68401258 + GA-rich Low_complexity Low_complexity 3 74 0 2 1203 696 299 0 0 chr6 81115898 81116045 -68400992 + B3A SINE B2 5 151 -47 2 1203 492 18 0 0 chr6 81116068 81116125 -68400912 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1203 24 53 0 0 chr6 81116129 81116167 -68400870 + AT_rich Low_complexity Low_complexity 1 38 0 2 1203 216 0 0 0 chr6 81117338 81117362 -68399675 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1203 309 311 107 13 chr6 81117517 81117667 -68399370 - Charlie8 DNA MER1_type -2231 197 34 2 1203 1235 89 6 0 chr6 81118045 81118224 -68398813 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1203 213 154 0 0 chr6 81118224 81118263 -68398774 + GA-rich Low_complexity Low_complexity 2 40 0 2 1203 21 57 0 0 chr6 81118309 81118344 -68398693 + AT_rich Low_complexity Low_complexity 1 35 0 2 1203 339 65 0 0 chr6 81118437 81118483 -68398554 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1203 452 241 0 0 chr6 81118880 81118963 -68398074 + B1_Mur3 SINE Alu 2 84 -65 2 1203 590 226 99 30 chr6 81119412 81119611 -68397426 - Lx4B LINE L1 -17 7041 6771 2 1203 30 45 0 0 chr6 81119925 81119969 -68397068 + AT_rich Low_complexity Low_complexity 1 44 0 2 1203 392 101 124 0 chr6 81119972 81120061 -68396976 - L1_Mus3 LINE L1 -5 6633 6534 2 1203 5582 102 12 1 chr6 81120061 81120893 -68396144 + L1_Mus3 LINE L1 5660 6500 -138 2 1203 375 353 36 14 chr6 81121692 81121954 -68395083 + L1M5 LINE L1 5219 5485 -688 2 1203 452 315 90 15 chr6 81122338 81122538 -68394499 + RMER15 LTR ERVL 347 561 -14 2 1203 389 36 18 0 chr6 81124515 81124570 -68392467 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1203 439 319 117 25 chr6 81125112 81125255 -68391782 + B3 SINE B2 2 161 -55 2 1203 342 0 0 0 chr6 81125255 81125293 -68391744 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1203 336 102 0 0 chr6 81125293 81125341 -68391696 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1203 439 319 117 25 chr6 81125341 81125392 -68391645 + B3 SINE B2 162 214 -2 2 1203 4179 78 82 0 chr6 81125588 81126176 -68390861 - L1Md_F2 LINE L1 -5 6577 5942 2 1203 1607 182 87 12 chr6 81126422 81126744 -68390293 - ORR1B1 LTR MaLR -8 386 41 2 1203 549 305 51 70 chr6 81126836 81127051 -68389986 + B3A SINE B2 2 212 -4 2 1203 749 285 25 10 chr6 81128174 81128376 -68388661 - B3 SINE B2 -11 205 1 2 1203 1059 298 41 44 chr6 81129792 81130182 -68386855 + MTE2a LTR MaLR 2 403 -16 2 1203 1082 261 77 19 chr6 81130806 81131051 -68385986 - MER2 DNA MER2_type 0 345 87 2 1203 363 89 0 0 chr6 81131051 81131107 -68385930 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1203 307 368 22 63 chr6 81131113 81131336 -68385701 - ID_B1 SINE B4 -9 215 2 2 1203 1082 261 77 19 chr6 81131336 81131407 -68385630 - MER2 DNA MER2_type -265 80 4 2 1203 391 331 46 46 chr6 81131703 81131877 -68385160 - B4A SINE B4 -117 175 2 2 1203 324 0 0 0 chr6 81132314 81132350 -68384687 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1203 2580 168 45 10 chr6 81132584 81133094 -68383943 - RLTR11A LTR ERVK 0 528 1 2 1203 180 205 22 43 chr6 81133308 81133354 -68383683 + L4 LINE RTE 1192 1236 -793 2 1204 648 261 68 169 chr6 81133784 81133976 -68383061 - MTE2a LTR MaLR -6 373 201 2 1204 447 19 0 0 chr6 81133976 81134028 -68383009 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 2 1204 648 261 68 169 chr6 81134028 81134250 -68382787 - MTE2a LTR MaLR -179 200 1 2 1204 345 264 102 19 chr6 81135000 81135108 -68381929 + PB1D10 SINE Alu 1 117 0 2 1204 1326 287 3 3 chr6 81135246 81135543 -68381494 + MTD LTR MaLR 1 297 -122 2 1204 251 331 7 21 chr6 81135674 81135819 -68381218 + GA-rich Low_complexity Low_complexity 1 143 0 2 1204 254 266 191 0 chr6 81136387 81136481 -68380556 + PB1D10 SINE Alu 1 112 -5 2 1204 413 261 54 0 chr6 81136656 81136748 -68380289 + B1_Mur1 SINE Alu 42 138 -11 2 1204 316 304 124 16 chr6 81136886 81137099 -68379938 + L1M2 LINE L1 5552 5778 -534 2 1204 402 21 0 0 chr6 81137099 81137146 -68379891 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1204 316 304 124 16 chr6 81137146 81137189 -68379848 + L1M2 LINE L1 5779 5835 -477 2 1204 442 296 10 0 chr6 81137357 81137455 -68379582 - B3 SINE B2 -46 170 72 2 1204 258 287 103 9 chr6 81138210 81138326 -68378711 - MER5A DNA MER1_type -6 183 57 2 1204 732 260 12 0 chr6 81138508 81138677 -68378360 - MTD LTR MaLR -14 405 235 2 1204 222 37 0 0 chr6 81138679 81138706 -68378331 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1204 216 156 0 43 chr6 81138708 81138755 -68378282 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 2 1204 517 291 0 8 chr6 81138759 81138877 -68378160 - RSINE1 SINE B4 -45 120 4 2 1204 466 287 12 62 chr6 81138884 81139044 -68377993 + B3A SINE B2 47 198 0 2 1204 6529 78 4 22 chr6 81139219 81140163 -68376874 + L1_Mus2 LINE L1 5638 6564 -2 2 1204 2981 267 30 13 chr6 81140568 81141482 -68375555 - RCHARR1 DNA MER1_type 0 974 46 2 1204 1383 294 55 31 chr6 81141556 81142100 -68374937 + Lx8 LINE L1 6915 7471 -2 2 1204 2314 91 26 6 chr6 81142709 81143053 -68373984 - L1Md_F2 LINE L1 -12 6570 6220 2 1204 873 28 0 0 chr6 81143053 81143160 -68373877 + L1Md_F2 LINE L1 6112 6218 -364 2 1204 42 82 0 0 chr6 81143442 81143540 -68373497 + AT_rich Low_complexity Low_complexity 1 98 0 2 1204 215 340 0 0 chr6 81143787 81143834 -68373203 + RSINE1 SINE B4 5 51 -114 2 1204 1018 79 0 14 chr6 81144034 81144175 -68372862 - B1_Mus1 SINE Alu -3 145 7 2 1204 1171 39 7 7 chr6 81144292 81144446 -68372591 + (TCTCCC)n Simple_repeat Simple_repeat 4 157 0 2 1204 238 246 0 0 chr6 81144446 81144503 -68372534 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1204 395 262 165 59 chr6 81145006 81145188 -68371849 - B3A SINE B2 -6 210 1 2 1204 877 188 70 20 chr6 81145514 81145715 -68371322 - L1_Mur2 LINE L1 -237 5640 5430 2 1204 3073 168 34 7 chr6 81145715 81146238 -68370799 + L1_Mur2 LINE L1 2944 3476 -2401 2 1204 1434 45 0 0 chr6 81146238 81146416 -68370621 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 1204 3073 168 34 7 chr6 81146416 81146571 -68370466 + L1_Mur2 LINE L1 3477 3640 -2237 2 1204 231 328 0 0 chr6 81146699 81146763 -68370274 + RMER15 LTR ERVL 403 466 -109 2 1204 369 0 0 0 chr6 81147283 81147324 -68369713 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1204 378 0 0 0 chr6 81147324 81147365 -68369672 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1204 371 350 0 0 chr6 81147391 81147488 -68369549 - RSINE1 SINE B4 -67 98 2 2 1204 8275 128 16 9 chr6 81148423 81150068 -68366969 + Lx3A LINE L1 5296 6945 -36 2 1204 369 0 0 0 chr6 81150068 81150109 -68366928 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 2 1204 1085 123 0 6 chr6 81150109 81150289 -68366748 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 2 1204 8275 136 10 14 chr6 81150289 81150320 -68366717 + Lx3A LINE L1 6946 6979 -2 2 1204 1032 85 18 12 chr6 81150729 81150895 -68366142 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 2 1204 216 200 33 16 chr6 81150901 81150945 -68366092 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1204 606 71 0 0 chr6 81150945 81151029 -68366008 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 3 1204 216 200 33 16 chr6 81151029 81151045 -68365992 + (TA)n Simple_repeat Simple_repeat 1 16 0 3 1204 349 138 0 0 chr6 81151063 81151121 -68365916 + Lx5 LINE L1 5810 5867 -1183 3 1204 4362 198 50 33 chr6 81151116 81152127 -68364910 + Lx5 LINE L1 6022 7050 0 3 1204 525 324 57 33 chr6 81152309 81152520 -68364517 + B3A SINE B2 1 216 0 3 1204 820 256 85 96 chr6 81152722 81153018 -68364019 - MTE2b LTR MaLR 0 379 110 3 1204 366 391 69 0 chr6 81153072 81153246 -68363791 - Tigger5 DNA MER2_type -2219 187 2 3 1204 282 259 0 0 chr6 81153432 81153490 -68363547 + B4A SINE B4 42 99 -193 3 1204 232 259 0 0 chr6 81153556 81153610 -68363427 + Lx8 LINE L1 6114 6167 -1306 3 1204 529 188 13 0 chr6 81153610 81153759 -68363278 + (TA)n Simple_repeat Simple_repeat 1 151 0 3 1204 609 334 129 14 chr6 81153829 81154209 -68362828 + Lx8 LINE L1 6259 6830 -814 3 1204 10229 57 2 2 chr6 81154248 81156311 -68360726 - L1Md_F2 LINE L1 -9 6573 4512 3 1204 559 294 56 14 chr6 81156330 81156544 -68360493 + Lx8 LINE L1 7119 7341 -132 3 1204 465 50 0 0 chr6 81156752 81156812 -68360225 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1204 473 271 85 7 chr6 81157904 81158045 -68358992 - B3A SINE B2 -46 152 1 3 1204 24 32 0 0 chr6 81158784 81158815 -68358222 + AT_rich Low_complexity Low_complexity 1 31 0 3 1204 3167 72 7 5 chr6 81159012 81159431 -68357606 - L1Md_F2 LINE L1 -1 6581 6162 3 1204 533 318 27 7 chr6 81159559 81159708 -68357329 + B3A SINE B2 1 152 -46 3 1204 387 0 0 0 chr6 81159723 81159766 -68357271 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1204 23 0 0 0 chr6 81159819 81159842 -68357195 + AT_rich Low_complexity Low_complexity 1 23 0 3 1204 24 77 0 0 chr6 81159921 81159973 -68357064 + AT_rich Low_complexity Low_complexity 1 52 0 3 1204 750 241 24 0 chr6 81160673 81160839 -68356198 - B4 SINE B4 -120 172 3 3 1204 598 312 12 25 chr6 81161015 81161180 -68355857 + B3A SINE B2 2 162 -54 3 1204 785 87 9 0 chr6 81161180 81161295 -68355742 + (TC)n Simple_repeat Simple_repeat 1 116 0 3 1204 198 0 0 0 chr6 81161295 81161316 -68355721 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1204 525 331 16 52 chr6 81161316 81161343 -68355694 + B3 SINE B2 163 187 -29 3 1204 238 161 24 24 chr6 81161343 81161426 -68355611 + (CAGA)n Simple_repeat Simple_repeat 1 83 0 3 1204 307 158 70 0 chr6 81161426 81161483 -68355554 + HAL1-3A_ME LINE L1 1976 2036 -822 3 1204 250 240 28 46 chr6 81161599 81161708 -68355329 - L1_Rod LINE L1 -488 5359 5253 3 1204 207 0 0 0 chr6 81161722 81161745 -68355292 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 3 1204 492 205 62 6 chr6 81161758 81161920 -68355117 + Lx9 LINE L1 7458 7628 -16 3 1204 574 344 15 10 chr6 81162006 81162203 -68354834 + B3A SINE B2 1 198 0 3 1204 7667 105 21 9 chr6 81162311 81163473 -68353564 - Lx3_Mus LINE L1 0 7009 5834 3 1204 208 111 0 36 chr6 81163523 81163579 -68353458 + (TTTTTG)n Simple_repeat Simple_repeat 1 54 0 3 1204 1171 49 7 0 chr6 81163614 81163757 -68353280 - B1_Mus1 SINE Alu -2 146 3 3 1204 1554 46 0 0 chr6 81163758 81163955 -68353082 - Lx3_Mus LINE L1 -1168 5841 5645 3 1204 186 103 0 0 chr6 81167261 81167290 -68349747 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1204 252 309 79 35 chr6 81167542 81167656 -68349381 + MLT1I LTR MaLR 82 200 -211 3 1204 387 145 34 57 chr6 81168141 81168229 -68348808 - ORR1E LTR MaLR 0 379 289 3 1204 1118 161 0 0 chr6 81168239 81168413 -68348624 + (TCTCTG)n Simple_repeat Simple_repeat 1 174 0 3 1204 380 264 68 60 chr6 81168430 81168563 -68348474 + ORR1E LTR MaLR 206 339 -20 3 1204 513 0 0 0 chr6 81168585 81168642 -68348395 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1204 486 83 0 0 chr6 81168642 81168713 -68348324 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1204 423 333 109 30 chr6 81168725 81168991 -68348046 - B4A SINE B4 -4 288 2 3 1204 1082 244 191 0 chr6 81169352 81169667 -68347370 - MTEa LTR MaLR -4 375 1 3 1204 256 338 38 38 chr6 81169669 81169829 -68347208 - MIR SINE MIR -40 222 63 3 1204 490 268 92 64 chr6 81169937 81170188 -68346849 + Tigger8 DNA MER2_type 234 491 -175 3 1204 622 298 9 46 chr6 81170645 81170863 -68346174 - B3 SINE B2 -6 210 1 3 1204 250 215 88 12 chr6 81171017 81171097 -68345940 - L1MA4 LINE L1 -371 5929 5844 3 1204 338 335 42 42 chr6 81171610 81171775 -68345262 - B3A SINE B2 -33 165 1 3 1204 534 142 26 9 chr6 81171801 81171915 -68345122 + CT-rich Low_complexity Low_complexity 1 116 0 3 1204 304 341 124 12 chr6 81172805 81172974 -68344063 + B3A SINE B2 6 193 -5 3 1204 243 162 0 0 chr6 81174055 81174092 -68342945 + tRNA-Thr-ACY_ tRNA tRNA 4 40 -37 3 1204 286 229 24 24 chr6 81174228 81174313 -68342724 + Lx8 LINE L1 6975 7059 -414 3 1204 446 194 69 0 chr6 81174730 81174874 -68342163 - Lx9 LINE L1 0 7644 7491 3 1204 194 91 30 0 chr6 81174893 81174926 -68342111 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1204 1219 41 0 0 chr6 81175838 81175984 -68341053 + B1_Mus2 SINE Alu 2 147 0 3 1204 240 35 0 0 chr6 81175984 81176013 -68341024 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1204 207 224 0 0 chr6 81177228 81177304 -68339733 + CT-rich Low_complexity Low_complexity 1 76 0 3 1204 389 288 120 6 chr6 81177454 81177659 -68339378 + L1M5 LINE L1 4709 4937 -1209 3 1204 249 139 0 0 chr6 81177727 81177770 -68339267 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1204 245 211 77 0 chr6 81177918 81177970 -68339067 - MTE2b LTR MaLR -323 56 1 3 1204 971 122 16 25 chr6 81177998 81178241 -68338796 + CT-rich Low_complexity Low_complexity 1 241 0 3 1204 1019 286 129 9 chr6 81179098 81179423 -68337614 + MTEa LTR MaLR 16 379 0 3 1204 183 42 0 0 chr6 81179650 81179674 -68337363 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 1204 475 295 22 8 chr6 81179989 81180225 -68336812 + L1MA6 LINE L1 6004 6232 -68 3 1204 288 158 0 0 chr6 81180412 81180469 -68336568 + GA-rich Low_complexity Low_complexity 1 57 0 3 1204 195 42 0 0 chr6 81181154 81181178 -68335859 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1204 1112 296 40 7 chr6 81181513 81181789 -68335248 - B4 SINE B4 -1 291 7 3 1204 1336 156 46 0 chr6 81181903 81182141 -68334896 - RLTR15 LTR ERVK 0 359 111 3 1204 764 259 36 0 chr6 81182645 81182838 -68334199 - B3 SINE B2 -15 201 2 3 1204 723 316 14 32 chr6 81182871 81183152 -68333885 + B4 SINE B4 3 278 -14 3 1204 459 165 0 0 chr6 81183191 81183276 -68333761 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 1204 455 365 14 0 chr6 81183572 81183717 -68333320 + RSINE1 SINE B4 6 152 -13 3 1204 291 303 22 11 chr6 81183716 81183806 -68333231 + MER45A DNA Tip100 81 171 -7 3 1204 6923 109 1 3 chr6 81184064 81185093 -68331944 - Lx LINE L1 0 6654 5628 3 1204 2365 34 6 279 chr6 81185093 81185630 -68331407 - RLTR10 LTR ERVK 0 390 1 3 1204 8115 25 4 6 chr6 81185632 81186629 -68330408 - RLTR10-int LTR ERVK -3 1984 990 3 1204 296 273 39 15 chr6 81186711 81186841 -68330196 - RLTR10-int LTR ERVK -5987 1594 1462 3 1204 7487 49 0 3 chr6 81186905 81187866 -68329171 - RLTR10-int LTR ERVK -989 998 41 3 1204 2365 34 6 279 chr6 81187876 81188413 -68328624 - RLTR10 LTR ERVK 0 390 1 3 1204 1457 106 14 0 chr6 81188413 81188631 -68328406 - L1_Mm LINE L1 -250 5633 5413 3 1204 233 217 13 115 chr6 81188945 81189023 -68328014 + ID SINE ID 2 71 -153 3 1204 621 102 0 0 chr6 81189023 81189131 -68327906 + (TC)n Simple_repeat Simple_repeat 1 108 0 3 1204 297 284 14 0 chr6 81189765 81189839 -68327198 - MER45A DNA Tip100 -23 155 81 3 1204 461 282 35 82 chr6 81190122 81190210 -68326827 + RSINE1 SINE B4 4 82 -83 3 1204 3422 37 136 0 chr6 81190210 81190644 -68326393 + MT2_Mm LTR ERVL 1 493 0 3 1204 461 282 35 82 chr6 81190644 81190725 -68326312 + RSINE1 SINE B4 83 165 0 3 1204 581 235 0 6 chr6 81190729 81190909 -68326128 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1204 664 241 0 15 chr6 81191232 81191367 -68325670 - ID_B1 SINE B4 -8 216 84 3 1204 601 297 44 39 chr6 81191383 81191789 -68325248 + L1MA6 LINE L1 5880 6287 -13 3 1204 570 275 42 0 chr6 81192205 81192347 -68324690 + MER58B DNA MER1_type 192 339 -2 3 1204 262 343 40 11 chr6 81192620 81192794 -68324243 - L1M2 LINE L1 -529 5771 5593 3 1204 4689 224 45 59 chr6 81192790 81192988 -68324049 - Lx6 LINE L1 -4 7456 7261 3 1204 180 0 0 0 chr6 81192988 81193008 -68324029 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 3 1204 4689 224 45 59 chr6 81193008 81193644 -68323393 - Lx6 LINE L1 -200 7260 6640 3 1204 882 103 20 0 chr6 81193644 81193790 -68323247 - L1_Mus3 LINE L1 -6 6632 6484 3 1204 4689 224 45 59 chr6 81193790 81194146 -68322891 - Lx6 LINE L1 -821 6639 6284 3 1204 1435 229 77 12 chr6 81194171 81194498 -68322539 - MTD LTR MaLR -35 384 37 3 1204 1301 152 23 8 chr6 81194747 81195006 -68322031 - Lx2B LINE L1 -723 6277 6015 3 1204 3483 194 44 6 chr6 81195006 81195681 -68321356 + Lx2B LINE L1 6294 6994 -6 3 1204 519 265 68 37 chr6 81196069 81196230 -68320807 + B3A SINE B2 1 166 -32 3 1204 249 98 0 0 chr6 81196230 81196271 -68320766 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1204 635 148 7 0 chr6 81196271 81196420 -68320617 + GA-rich Low_complexity Low_complexity 1 150 0 3 1204 307 306 71 0 chr6 81196658 81196756 -68320281 + PB1D10 SINE Alu 5 109 -8 3 1204 269 291 0 0 chr6 81197114 81197193 -68319844 + B4 SINE B4 9 87 -205 3 1204 261 0 0 0 chr6 81197193 81197222 -68319815 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1204 398 20 20 0 chr6 81197222 81197272 -68319765 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1204 611 310 147 64 chr6 81197685 81198106 -68318931 + MLT1C LTR MaLR 11 466 -1 3 1204 680 308 13 4 chr6 81198805 81199030 -68318007 - Lx8 LINE L1 -1030 6443 6217 3 1204 213 65 0 0 chr6 81199262 81199293 -68317744 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1204 678 293 6 6 chr6 81199325 81199490 -68317547 - B4 SINE B4 -127 165 1 4 1204 1381 257 3 13 chr6 81200667 81200974 -68316063 + MTD LTR MaLR 104 407 -12 4 1204 212 103 51 17 chr6 81201669 81201728 -68315309 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 4 1204 22 56 0 0 chr6 81201728 81201764 -68315273 + AT_rich Low_complexity Low_complexity 1 36 0 4 1204 522 218 45 9 chr6 81201764 81201875 -68315162 - MTE2a LTR MaLR -24 355 241 4 1204 301 294 133 26 chr6 81201900 81202065 -68314972 - MTE2a LTR MaLR -203 216 31 4 1204 1071 125 0 0 chr6 81202094 81202302 -68314735 + (GGAA)n Simple_repeat Simple_repeat 1 208 0 4 1204 3583 281 60 22 chr6 81203387 81203588 -68313449 + Lx7 LINE L1 5971 6176 -1520 4 1204 315 0 0 0 chr6 81203588 81203623 -68313414 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1204 3583 281 60 22 chr6 81203623 81204715 -68312322 + Lx7 LINE L1 6177 7312 -384 4 1204 191 36 36 0 chr6 81204741 81204769 -68312268 + (CTTTG)n Simple_repeat Simple_repeat 1 29 0 4 1204 260 286 80 64 chr6 81204789 81204976 -68312061 + Lx7 LINE L1 7491 7680 -16 4 1204 227 298 0 0 chr6 81205009 81205066 -68311971 + B2_Mm2 SINE B2 2 58 -137 4 1204 721 261 44 6 chr6 81206307 81206465 -68310572 + B3A SINE B2 1 164 -34 4 1204 351 0 0 0 chr6 81206469 81206508 -68310529 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1204 246 268 58 14 chr6 81206877 81206957 -68310080 + B4A SINE B4 60 143 -149 4 1204 226 216 16 57 chr6 81207002 81207047 -68309990 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1204 379 67 9 80 chr6 81207047 81207160 -68309877 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 4 1204 226 216 16 57 chr6 81207160 81207237 -68309800 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 1204 262 343 0 0 chr6 81207246 81207316 -68309721 + B4 SINE B4 219 288 -4 4 1204 27 49 0 0 chr6 81207364 81207405 -68309632 + AT_rich Low_complexity Low_complexity 1 41 0 4 1204 560 228 31 0 chr6 81208330 81208457 -68308580 + Lx8 LINE L1 7146 7276 -197 4 1204 535 241 371 10 chr6 81208834 81209146 -68307891 + Lx8 LINE L1 7047 7471 -2 4 1204 939 231 14 0 chr6 81209251 81209459 -68307578 - B3 SINE B2 -5 211 1 4 1204 3943 153 93 97 chr6 81209505 81210398 -68306639 + RMER19B LTR ERVK 1 889 -13 4 1204 207 0 0 0 chr6 81211568 81211591 -68305446 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1204 554 300 78 30 chr6 81211857 81212125 -68304912 - Lx8 LINE L1 -144 7329 7049 4 1204 549 295 41 54 chr6 81212548 81212842 -68304195 + B4 SINE B4 3 292 0 4 1204 379 265 47 38 chr6 81213491 81213597 -68303440 + B4A SINE B4 4 110 -182 4 1204 486 0 0 0 chr6 81213693 81213747 -68303290 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1204 309 26 0 0 chr6 81213748 81213786 -68303251 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1204 612 81 0 0 chr6 81214336 81214423 -68302614 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1204 23 0 0 0 chr6 81214969 81214992 -68302045 + AT_rich Low_complexity Low_complexity 1 23 0 4 1204 282 56 0 0 chr6 81215385 81215421 -68301616 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1204 443 221 142 7 chr6 81217222 81217363 -68299674 - RMER20B LTR ERVK -234 393 234 4 1204 495 253 90 24 chr6 81217679 81217845 -68299192 - MTEa LTR MaLR 0 379 203 4 1204 1009 278 90 17 chr6 81218450 81218735 -68298302 - MTE2a LTR MaLR 0 379 74 4 1204 632 318 11 11 chr6 81218735 81218776 -68298261 + B3A SINE B2 2 42 -156 4 1204 261 0 0 0 chr6 81218776 81218805 -68298232 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1204 632 318 11 11 chr6 81218805 81218944 -68298093 + B3A SINE B2 43 181 -17 4 1204 879 100 0 0 chr6 81218947 81219097 -68297940 + (GA)n Simple_repeat Simple_repeat 2 151 0 4 1204 181 292 0 0 chr6 81219280 81219328 -68297709 - MER5A DNA MER1_type -138 51 4 4 1204 24 32 0 0 chr6 81219988 81220019 -68297018 + AT_rich Low_complexity Low_complexity 1 31 0 4 1204 2440 83 11 14 chr6 81220350 81220718 -68296319 + Lx3A LINE L1 5695 6061 -920 4 1204 407 258 21 0 chr6 81220719 81220812 -68296225 - B4 SINE B4 -197 95 1 4 1204 5293 42 0 0 chr6 81221964 81222599 -68294438 - L1Md_T LINE L1 0 6582 5948 4 1204 13905 28 2 0 chr6 81222599 81224326 -68292711 - L1_Mm LINE L1 -637 5246 3517 4 1204 640 274 0 0 chr6 81224325 81224489 -68292548 + L1_Mur3 LINE L1 367 530 -7198 4 1204 601 188 21 0 chr6 81224498 81224642 -68292395 + L1_Mur3 LINE L1 1443 1589 -4291 4 1204 2654 144 4 19 chr6 81224641 81225123 -68291914 + Lx2 LINE L1 5704 6178 -819 4 1204 3588 44 5 5 chr6 81225123 81225559 -68291478 + RLTR10C LTR ERVK 1 436 0 4 1204 2649 58 0 0 chr6 81225559 81225902 -68291135 + MMERVK10C-int LTR ERVK 1 343 -7238 4 1204 719 193 6 6 chr6 81225900 81226082 -68290955 + MMERVK10C-int LTR ERVK 729 910 -6671 4 1204 482 114 0 0 chr6 81226112 81226191 -68290846 + MMERVK10C-int LTR ERVK 874 952 -6629 4 1204 584 237 129 51 chr6 81226281 81226651 -68290386 + MMERVK10C-int LTR ERVK 312 668 -5469 4 1204 306 155 17 0 chr6 81226651 81226709 -68290328 + MMERVK10C-int LTR ERVK 1721 1779 -5627 4 1204 362 95 0 0 chr6 81226716 81226779 -68290258 + MMERVK10C-int LTR ERVK 1885 1947 -5634 4 1204 43277 12 0 0 chr6 81226785 81231815 -68285222 + MMERVK10C-int LTR ERVK 2552 7581 0 4 1204 3601 42 5 5 chr6 81231815 81232251 -68284786 + RLTR10C LTR ERVK 1 436 0 4 1204 4769 138 50 6 chr6 81232254 81233041 -68283996 + Lx2 LINE L1 6176 6996 -1 4 1204 1359 211 105 119 chr6 81233059 81233690 -68283347 + L1_Mur3 LINE L1 1580 2188 -3692 4 1204 432 37 0 0 chr6 81233690 81233744 -68283293 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1204 1359 211 105 119 chr6 81233744 81233963 -68283074 + L1_Mur3 LINE L1 2189 2418 -3462 4 1204 4427 247 39 51 chr6 81233972 81234131 -68282906 - Lx6 LINE L1 -10 7450 7272 4 1204 339 85 0 0 chr6 81234131 81234178 -68282859 + (ATG)n Simple_repeat Simple_repeat 2 48 0 4 1204 4427 247 39 51 chr6 81234178 81234567 -68282470 - Lx6 LINE L1 -189 7271 6880 4 1204 477 0 0 0 chr6 81234567 81234620 -68282417 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1204 4427 247 39 51 chr6 81234620 81235351 -68281686 - Lx6 LINE L1 -581 6879 6186 4 1204 1769 146 49 42 chr6 81235349 81235734 -68281303 + L1_Mur3 LINE L1 3534 3921 -1959 4 1204 1635 216 36 80 chr6 81235769 81236337 -68280700 + MYSERV6-int LTR ERVK 8423 8902 -57 4 1204 1297 251 121 82 chr6 81236345 81236892 -68280145 + RMER4B LTR ERVK 17 584 -1 4 1204 738 145 0 0 chr6 81237898 81238022 -68279015 + (GAAA)n Simple_repeat Simple_repeat 1 124 0 4 1204 568 279 43 7 chr6 81238834 81238975 -68278062 - RSINE1 SINE B4 -17 148 3 4 1204 588 339 86 93 chr6 81238975 81239369 -68277668 + MER70B LTR ERVL 183 573 -5 4 1204 5151 66 3 1 chr6 81239528 81240196 -68276841 - L1_Mus1 LINE L1 0 6567 5899 4 1204 691 317 25 68 chr6 81240513 81240791 -68276246 + B4A SINE B4 2 267 -25 4 1204 1410 15 22 33 chr6 81240987 81241263 -68275774 + (TCTCCC)n Simple_repeat Simple_repeat 1 272 0 4 1204 1312 101 14 9 chr6 81241263 81241483 -68275554 - L1_Mus3 LINE L1 -44 6594 6374 4 1204 722 0 0 0 chr6 81241502 81241595 -68275442 - L1Md_T LINE L1 0 6582 6490 4 1204 2545 105 5 0 chr6 81241596 81241977 -68275060 - L1_Mus3 LINE L1 -267 6371 5989 4 1204 2688 137 0 0 chr6 81241992 81242415 -68274622 + L1_Mm LINE L1 5458 5880 -3 4 1204 1217 183 0 0 chr6 81242412 81242625 -68274412 - Lx2B LINE L1 -330 6670 6458 4 1204 1905 159 18 15 chr6 81242625 81242958 -68274079 + Lx2A1 LINE L1 6673 7006 -2 4 1204 536 224 6 17 chr6 81243572 81243745 -68273292 + GA-rich Low_complexity Low_complexity 4 174 0 4 1204 1254 95 0 0 chr6 81243724 81243903 -68273134 + (GGA)n Simple_repeat Simple_repeat 2 180 0 4 1204 1452 44 0 0 chr6 81243903 81244083 -68272954 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1204 243 0 0 0 chr6 81244083 81244110 -68272927 + (GAA)n Simple_repeat Simple_repeat 1 27 0 4 1204 819 31 0 0 chr6 81244114 81244212 -68272825 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 4 1204 499 258 85 12 chr6 81244571 81244736 -68272301 + B3A SINE B2 4 180 -18 4 1204 14159 179 91 35 chr6 81244736 81248508 -68268529 + Lx6 LINE L1 1918 5917 -1543 4 1204 207 0 0 0 chr6 81248531 81248554 -68268483 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1204 2354 128 36 0 chr6 81248554 81248912 -68268125 + ORR1B1 LTR MaLR 24 394 0 4 1204 1303 159 23 18 chr6 81248972 81249190 -68267847 + URR1B DNA MER1_type 7 225 0 4 1204 4277 218 60 19 chr6 81249190 81250207 -68266830 + Lx6 LINE L1 5966 7024 -436 4 1204 775 135 7 14 chr6 81250210 81250353 -68266684 + (TATATG)n Simple_repeat Simple_repeat 2 143 0 4 1204 5131 44 0 0 chr6 81250417 81251028 -68266009 - L1Md_F2 LINE L1 -3 6579 5969 4 1204 260 298 14 47 chr6 81251028 81251176 -68265861 + Lx6 LINE L1 7142 7284 -176 4 1204 28 0 0 0 chr6 81251219 81251247 -68265790 + AT_rich Low_complexity Low_complexity 1 28 0 4 1204 647 287 84 55 chr6 81251491 81251764 -68265273 + B4 SINE B4 2 282 -10 4 1204 411 329 18 0 chr6 81251786 81251953 -68265084 + (CATATA)n Simple_repeat Simple_repeat 3 172 0 4 1204 318 80 0 0 chr6 81252054 81252104 -68264933 + (TTAG)n Simple_repeat Simple_repeat 3 52 0 4 1204 1154 114 60 5 chr6 81252243 81252428 -68264609 + B2_Mm2 SINE B2 1 195 0 4 1204 562 318 98 4 chr6 81252564 81252820 -68264217 - Charlie1 DNA MER1_type -269 2512 2233 4 1204 334 327 9 0 chr6 81252823 81252933 -68264104 - Charlie1 DNA MER1_type -2641 140 30 4 1204 307 320 24 24 chr6 81253241 81253366 -68263671 - MLT1I LTR MaLR -2 409 285 4 1204 835 342 24 48 chr6 81255001 81255293 -68261744 + B4A SINE B4 8 292 0 4 1204 4231 223 17 56 chr6 81255618 81256310 -68260727 + Lx6 LINE L1 4613 5253 -627 4 1204 351 0 0 0 chr6 81256310 81256349 -68260688 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1204 4231 244 52 41 chr6 81256349 81257488 -68259549 + Lx6 LINE L1 5254 6452 -598 4 1204 434 65 0 16 chr6 81257563 81257626 -68259411 + (TCC)n Simple_repeat Simple_repeat 2 63 0 4 1204 385 326 105 61 chr6 81257823 81258234 -68258803 + L1M5 LINE L1 3419 3847 -2299 4 1204 31099 89 2 5 chr6 81258263 81263433 -68253604 + L1Md_F2 LINE L1 218 5586 -297 4 1204 7399 62 34 6 chr6 81263434 81264402 -68252635 + L1Md_F2 LINE L1 5588 6582 0 4 150 21 89 0 0 chr6 81264597 81264653 -68252384 + AT_rich Low_complexity Low_complexity 1 56 0 4 1205 483 348 78 27 chr6 81264796 81265053 -68251984 + B4A SINE B4 1 270 -22 4 1205 378 61 30 15 chr6 81265079 81265146 -68251891 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1205 654 13 0 0 chr6 81265146 81265220 -68251817 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 1205 26 74 0 0 chr6 81265821 81265875 -68251162 + AT_rich Low_complexity Low_complexity 1 54 0 4 1205 8488 2 4 0 chr6 81265961 81267510 -68249527 - L1Md_A LINE L1 -1 6581 5027 4 1205 2008 155 0 21 chr6 81267674 81268010 -68249027 + ORR1A4 LTR MaLR 1 329 0 4 1205 707 305 36 88 chr6 81268259 81268484 -68248553 - B4 SINE B4 -2 290 86 4 1205 432 0 0 0 chr6 81268484 81268532 -68248505 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 4 1205 707 305 36 88 chr6 81268532 81268612 -68248425 - B4 SINE B4 -207 85 1 4 1205 679 253 98 16 chr6 81268660 81268853 -68248184 + B3 SINE B2 2 210 -6 4 1205 391 349 23 6 chr6 81268885 81269061 -68247976 + B3A SINE B2 4 182 -16 4 1205 991 300 31 37 chr6 81269140 81269622 -68247415 + L1VL4 LINE L1 148 626 -5676 4 1205 17169 124 9 15 chr6 81269619 81273090 -68243947 + L1_Mus3 LINE L1 2865 6311 -327 4 1205 3538 98 6 11 chr6 81273083 81273620 -68243417 + L1_Mus4 LINE L1 6099 6632 -4 5 1205 300 154 0 0 chr6 81274522 81274574 -68242463 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1205 819 303 87 0 chr6 81274575 81274829 -68242208 + B4A SINE B4 1 276 -16 5 1205 278 53 0 66 chr6 81274907 81274968 -68242069 + (GGGAGA)n Simple_repeat Simple_repeat 1 57 0 5 1205 1795 220 90 16 chr6 81275042 81275486 -68241551 + Lx5 LINE L1 6574 7050 0 5 1205 213 119 0 0 chr6 81275488 81275530 -68241507 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1205 353 252 22 52 chr6 81275537 81275671 -68241366 + RMER5 LTR ERV1 59 188 -346 5 1205 3976 174 85 81 chr6 81275677 81276563 -68240474 + RMER19B LTR ERVK 2 890 -12 5 1205 1067 259 45 29 chr6 81276637 81276947 -68240090 + RMER5 LTR ERV1 220 534 0 5 1205 677 312 62 59 chr6 81277245 81277565 -68239472 + MER67C LTR ERV1 129 449 -262 5 1205 550 99 0 0 chr6 81278369 81278450 -68238587 + L1_Mus3 LINE L1 6082 6162 -476 5 1205 4165 149 93 9 chr6 81278448 81279500 -68237537 + L1Md_F LINE L1 240 1205 -5519 5 1205 2569 52 5 169 chr6 81279507 81279944 -68237093 + RLTR10B2 LTR ERVK 1 365 0 5 1205 4330 52 0 0 chr6 81279955 81280516 -68236521 + L1Md_F2 LINE L1 5026 5586 -297 5 1205 7964 52 1 5 chr6 81280516 81281516 -68235521 + L1Md_F2 LINE L1 5587 6582 0 5 1205 29844 76 19 47 chr6 81281516 81286238 -68230799 + L1Md_F LINE L1 1175 5767 -116 5 1205 2329 69 119 11 chr6 81286238 81286590 -68230447 + RLTR10 LTR ERVK 1 390 0 5 1205 5518 38 7 11 chr6 81286590 81287290 -68229747 + RLTR10-int LTR ERVK 302 998 -989 5 1205 308 266 39 15 chr6 81287354 81287484 -68229553 + RLTR10-int LTR ERVK 1462 1594 -5987 5 1205 8152 27 0 6 chr6 81287566 81288565 -68228472 + RLTR10-int LTR ERVK 992 1984 -3 5 1205 486 45 0 0 chr6 81288567 81288634 -68228403 + RLTR10 LTR ERVK 1 67 -323 5 1205 2155 63 114 6 chr6 81288625 81288958 -68228079 - RLTR10 LTR ERVK -17 373 5 5 1205 5671 105 4 7 chr6 81288958 81289782 -68227255 + L1Md_F2 LINE L1 5758 6578 -4 5 1205 3291 119 4 2 chr6 81289777 81290267 -68226770 + L1_Mus3 LINE L1 6141 6631 -7 5 1205 1898 244 63 73 chr6 81290321 81290926 -68226111 + RMER19C LTR ERVK 13 611 0 5 1205 324 239 0 123 chr6 81290927 81291008 -68226029 - RMER30 DNA MER1_type -2 200 130 5 1205 274 182 18 0 chr6 81291532 81291587 -68225450 - ORR1A4 LTR MaLR 0 329 274 5 1205 870 208 20 25 chr6 81291599 81291801 -68225236 - Lx6 LINE L1 -30 7430 7230 5 1205 1849 157 35 19 chr6 81291819 81292138 -68224899 - ORR1B2 LTR MaLR -43 324 1 5 1205 236 282 0 14 chr6 81292499 81292571 -68224466 + L1MC4a LINE L1 7659 7729 -153 5 1205 22 0 0 0 chr6 81293369 81293391 -68223646 + AT_rich Low_complexity Low_complexity 1 22 0 5 1205 576 301 52 45 chr6 81293564 81293853 -68223184 + RLTR15 LTR ERVK 1 291 -68 5 1205 351 0 0 0 chr6 81294208 81294247 -68222790 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1205 877 276 71 89 chr6 81294259 81294438 -68222599 - MTE2a LTR MaLR -4 375 194 5 1205 234 0 0 0 chr6 81294438 81294464 -68222573 + (TTGG)n Simple_repeat Simple_repeat 1 26 0 5 1205 877 276 71 89 chr6 81294464 81294666 -68222371 - MTE2a LTR MaLR -186 193 1 5 1205 425 239 303 0 chr6 81295208 81295363 -68221674 + B3 SINE B2 1 202 -14 5 1205 335 340 153 0 chr6 81295763 81295913 -68221124 - MER31B LTR ERV1 -180 286 114 5 1205 891 167 0 0 chr6 81297750 81297912 -68219125 + GA-rich Low_complexity Low_complexity 2 163 0 5 1205 1140 34 27 0 chr6 81298213 81298359 -68218678 - L1_Mus4 LINE L1 -365 6271 6122 5 1205 2193 113 50 6 chr6 81298359 81298716 -68218321 + L1_Mus4 LINE L1 6264 6636 0 5 1205 591 271 56 17 chr6 81298858 81299038 -68217999 - B3A SINE B2 -8 190 4 5 1205 5080 45 3 2 chr6 81299136 81299763 -68217274 + L1Md_F2 LINE L1 5954 6581 -1 5 1205 343 329 66 86 chr6 81300197 81300500 -68216537 + L1ME2 LINE L1 5850 6146 -18 5 1205 251 322 216 11 chr6 81300583 81300759 -68216278 - MLT1A0 LTR MaLR -7 358 147 5 1205 385 328 166 6 chr6 81300968 81301143 -68215894 - ID_B1 SINE B4 -21 203 1 5 1205 272 274 11 0 chr6 81301351 81301446 -68215591 - L1M2 LINE L1 -624 5676 5581 5 1205 530 268 25 94 chr6 81301646 81301848 -68215189 - B3A SINE B2 0 198 11 5 1205 208 184 20 0 chr6 81301883 81301932 -68215105 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 5 1205 379 294 11 11 chr6 81302230 81302323 -68214714 + B3A SINE B2 3 95 -103 5 1205 267 289 22 22 chr6 81303188 81303280 -68213757 + MLT1A1 LTR MaLR 305 396 -12 5 1205 192 341 126 85 chr6 81303721 81304038 -68212999 - L2a LINE L2 -8 3418 3089 5 1205 283 329 13 0 chr6 81304038 81304114 -68212923 + RSINE1 SINE B4 80 156 -9 5 1205 496 248 9 0 chr6 81304646 81304751 -68212286 - MTC LTR MaLR -5 416 311 5 1205 269 146 0 0 chr6 81304780 81304821 -68212216 - U6 snRNA snRNA -65 42 2 5 1205 202 106 21 21 chr6 81304886 81304934 -68212103 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 1205 1096 208 147 47 chr6 81305099 81305460 -68211577 - MTD LTR MaLR -5 414 1 5 1205 679 250 79 32 chr6 81305699 81305889 -68211148 + RMER30 DNA MER1_type 2 200 -2 5 1205 700 314 17 28 chr6 81306160 81306337 -68210700 - B3A SINE B2 -23 175 1 5 1205 3532 48 0 7 chr6 81306366 81306802 -68210235 + L1_Mus1 LINE L1 6134 6566 -1 5 1205 211 194 0 0 chr6 81306876 81306912 -68210125 + GA-rich Low_complexity Low_complexity 3 38 0 5 1205 820 301 94 17 chr6 81307277 81307629 -68209408 + MTE2b LTR MaLR 1 379 0 5 1205 241 263 59 20 chr6 81307867 81307968 -68209069 + CT-rich Low_complexity Low_complexity 4 108 0 5 1205 369 0 0 0 chr6 81308391 81308432 -68208605 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1205 962 291 148 15 chr6 81309206 81309530 -68207507 - ORR1D2 LTR MaLR 0 370 4 5 1205 267 398 45 72 chr6 81309703 81309968 -68207069 - MLT1F2 LTR MaLR -235 325 68 5 1205 474 270 111 17 chr6 81310472 81310634 -68206403 - B3A SINE B2 -19 179 6 5 1205 587 108 11 0 chr6 81310681 81310774 -68206263 + (TC)n Simple_repeat Simple_repeat 1 94 0 5 1205 22 0 0 0 chr6 81310799 81310821 -68206216 + AT_rich Low_complexity Low_complexity 1 22 0 5 1205 447 106 0 0 chr6 81311595 81311661 -68205376 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1205 303 365 93 34 chr6 81312037 81312508 -68204529 + Lx8 LINE L1 6975 7473 0 5 1205 230 331 106 16 chr6 81313020 81313143 -68203894 + MER53 DNA hAT 48 181 -12 5 1205 21 0 0 0 chr6 81313271 81313292 -68203745 + AT_rich Low_complexity Low_complexity 1 21 0 5 1205 850 287 44 57 chr6 81313353 81313649 -68203388 + B4 SINE B4 1 292 0 5 1205 445 270 10 10 chr6 81315407 81315508 -68201529 + B4A SINE B4 172 272 -20 5 1205 348 119 0 0 chr6 81315512 81315571 -68201466 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1205 212 104 0 40 chr6 81316045 81316095 -68200942 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 5 1205 1040 251 46 31 chr6 81316287 81316381 -68200656 + B4A SINE B4 2 97 -195 5 1205 756 22 0 0 chr6 81316381 81316471 -68200566 + (TC)n Simple_repeat Simple_repeat 2 91 0 5 1205 297 0 0 0 chr6 81316471 81316503 -68200534 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1205 1040 251 46 31 chr6 81316503 81316666 -68200371 + B4A SINE B4 98 263 -29 5 1205 384 125 0 0 chr6 81316666 81316730 -68200307 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1205 540 0 0 0 chr6 81317056 81317116 -68199921 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1205 480 18 0 0 chr6 81317116 81317172 -68199865 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1205 246 81 0 0 chr6 81317172 81317209 -68199828 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1205 880 238 39 5 chr6 81317552 81317755 -68199282 + B3 SINE B2 1 210 -6 5 1205 312 48 0 0 chr6 81318307 81318349 -68198688 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 5 1205 239 0 0 31 chr6 81318349 81318381 -68198656 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 5 1205 842 157 8 0 chr6 81318384 81318518 -68198519 - B1_Mus1 SINE Alu 0 148 14 5 1205 2438 210 27 38 chr6 81318726 81319357 -68197680 + RLTR20D LTR ERVK 1 568 0 5 1205 242 342 0 38 chr6 81319410 81319489 -68197548 + MLT1E2 LTR MaLR 1 76 -551 5 1205 665 268 7 7 chr6 81319502 81319645 -68197392 - MTD LTR MaLR -14 405 263 5 1205 868 311 12 48 chr6 81319685 81319741 -68197296 - MTD LTR MaLR -142 265 210 5 1205 519 17 0 0 chr6 81319741 81319801 -68197236 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1205 868 295 12 28 chr6 81319801 81320012 -68197025 - MTD LTR MaLR -194 225 18 5 1205 910 232 6 6 chr6 81320452 81320630 -68196407 - MTE2a LTR MaLR -6 373 196 5 1205 639 264 73 121 chr6 81320705 81321101 -68195936 + MTE2a LTR MaLR 3 379 0 5 1205 633 283 32 37 chr6 81321103 81321290 -68195747 - MTE2a LTR MaLR -193 186 1 5 1205 397 289 14 82 chr6 81321350 81321497 -68195540 - MER58A DNA MER1_type -23 201 65 5 1205 360 0 0 0 chr6 81322236 81322276 -68194761 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1205 49 43 0 0 chr6 81323093 81323163 -68193874 + AT_rich Low_complexity Low_complexity 1 70 0 5 1205 184 152 70 10 chr6 81323176 81323276 -68193761 + (TA)n Simple_repeat Simple_repeat 1 106 0 5 1205 1664 246 112 20 chr6 81323380 81323890 -68193147 - Lx8 LINE L1 -124 7349 6793 5 1205 1356 274 34 48 chr6 81324483 81325134 -68191903 + Lx9 LINE L1 5605 6246 -1398 5 1205 207 0 0 0 chr6 81325151 81325174 -68191863 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1205 601 213 153 6 chr6 81325240 81325410 -68191627 - Lx6 LINE L1 -31 7429 7235 5 1205 547 225 0 18 chr6 81325426 81325539 -68191498 + Lx9 LINE L1 6328 6438 -1206 5 1205 803 107 0 0 chr6 81325547 81325668 -68191369 - L1_Mus1 LINE L1 0 6567 6447 5 1205 5133 81 0 1 chr6 81325668 81326382 -68190655 + L1_Mus1 LINE L1 5713 6425 -141 5 1205 3215 261 95 6 chr6 81326380 81326721 -68190316 + Lx9 LINE L1 6430 6808 -836 5 1205 449 17 17 0 chr6 81326721 81326779 -68190258 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 5 1205 3215 261 95 6 chr6 81326779 81327508 -68189529 + Lx9 LINE L1 6809 7596 -48 5 1205 596 87 0 0 chr6 81327611 81327703 -68189334 + L1_Mus2 LINE L1 6475 6566 0 5 1205 1032 132 90 0 chr6 81327713 81327879 -68189158 - B2_Mm2 SINE B2 -14 181 1 5 1205 672 316 25 54 chr6 81327961 81328165 -68188872 + B3A SINE B2 1 198 0 5 1205 442 256 131 4 chr6 81329066 81329227 -68187810 - B3A SINE B2 -11 184 6 5 1205 1328 268 38 20 chr6 81330096 81330443 -68186594 + MTEb LTR MaLR 21 373 -6 6 1205 679 293 0 12 chr6 81332320 81332486 -68184551 + RSINE1 SINE B4 2 165 0 6 1205 367 259 6 6 chr6 81332486 81332653 -68184384 + (CA)n Simple_repeat Simple_repeat 1 167 0 6 1205 360 0 0 0 chr6 81332731 81332771 -68184266 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1205 592 296 7 27 chr6 81332787 81332933 -68184104 - RSINE1 SINE B4 -17 148 6 6 1205 1155 48 14 0 chr6 81333273 81333418 -68183619 - B1_Mus2 SINE Alu 0 147 1 6 1205 325 257 44 35 chr6 81333429 81333542 -68183495 - L1M4 LINE L1 -408 5776 5663 6 1205 318 345 27 95 chr6 81333671 81333702 -68183335 - B4A SINE B4 -46 246 216 6 1205 825 178 0 20 chr6 81333702 81333851 -68183186 - B1_Mur3 SINE Alu -3 146 1 6 1205 318 345 27 95 chr6 81333851 81334082 -68182955 - B4A SINE B4 -77 215 3 6 1205 553 245 97 43 chr6 81334090 81334522 -68182515 - L1M4 LINE L1 -576 5598 5140 6 1205 344 326 74 59 chr6 81334600 81334802 -68182235 - ID_B1 SINE B4 -15 209 5 6 1205 320 271 13 146 chr6 81334886 81335037 -68182000 - ID_B1 SINE B4 -4 220 90 6 1205 803 277 15 5 chr6 81335065 81335261 -68181776 - ID_B1 SINE B4 -26 198 1 6 1205 415 316 62 21 chr6 81335588 81335795 -68181242 + MLT1J-int LTR MaLR 1063 1295 -194 6 1205 568 321 23 29 chr6 81336223 81336396 -68180641 + B3A SINE B2 2 173 -25 6 1205 573 331 32 11 chr6 81336561 81336750 -68180287 - MLT1A0 LTR MaLR -36 329 137 6 1205 347 322 31 73 chr6 81336770 81336961 -68180076 - B3A SINE B2 -15 183 1 6 1205 837 298 41 38 chr6 81336992 81337183 -68179854 - MTE2a LTR MaLR -5 374 186 6 1205 5195 35 22 2 chr6 81337183 81337813 -68179224 - L1Md_T LINE L1 0 6582 5940 6 1205 837 312 49 37 chr6 81337813 81338024 -68179013 - MTE2a LTR MaLR -199 220 3 6 1205 227 391 29 22 chr6 81338025 81338161 -68178876 - MLT1A0 LTR MaLR -228 137 1 6 1205 22 0 0 0 chr6 81338174 81338196 -68178841 + AT_rich Low_complexity Low_complexity 1 22 0 6 1205 246 62 0 0 chr6 81338322 81338354 -68178683 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 6 1205 495 87 0 0 chr6 81338371 81338440 -68178597 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1205 224 288 0 0 chr6 81339082 81339152 -68177885 + MIRc SINE MIR 64 136 -132 6 1205 372 282 19 0 chr6 81340150 81340253 -68176784 + Lx8 LINE L1 7252 7356 -117 6 1205 1005 113 0 0 chr6 81340388 81340547 -68176490 + (CA)n Simple_repeat Simple_repeat 2 160 0 6 1205 1287 229 52 44 chr6 81340566 81340949 -68176088 - RLTR28B LTR ERVL 0 481 96 6 1205 23 33 0 0 chr6 81340973 81341003 -68176034 + AT_rich Low_complexity Low_complexity 1 30 0 6 1205 692 80 10 0 chr6 81341006 81341106 -68175931 + (GA)n Simple_repeat Simple_repeat 2 102 0 6 1205 10794 130 25 2 chr6 81341207 81343920 -68173117 + L1_Mus4 LINE L1 3857 6628 -8 6 1205 751 274 19 14 chr6 81343992 81344203 -68172834 - B3 SINE B2 -3 213 2 6 1205 746 294 20 10 chr6 81344329 81344525 -68172512 - B3 SINE B2 -4 212 15 6 1205 639 311 70 9 chr6 81344827 81345041 -68171996 + B4A SINE B4 1 227 -65 6 1205 268 232 0 14 chr6 81345045 81345115 -68171922 + A-rich Low_complexity Low_complexity 1 69 0 6 1205 451 322 30 82 chr6 81345303 81345536 -68171501 - MLT1E3 LTR MaLR 0 624 404 6 1205 213 39 0 0 chr6 81345734 81345760 -68171277 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1205 388 270 26 7 chr6 81346146 81346299 -68170738 + L1M5 LINE L1 5196 5351 -795 6 1205 5820 36 1 0 chr6 81346866 81347559 -68169478 + L1Md_T LINE L1 5889 6582 0 6 1205 732 295 105 37 chr6 81347692 81347988 -68169049 - MTEa LTR MaLR -9 370 55 6 1205 516 233 26 0 chr6 81348122 81348238 -68168799 - MTEa-int LTR MaLR -2 1578 1460 6 1205 6994 73 13 4 chr6 81348242 81349504 -68167533 - L1_Mus1 LINE L1 -1 6566 5294 6 1205 1665 53 0 0 chr6 81349504 81349711 -68167326 - L1Md_A LINE L1 -2 6580 6374 6 1205 5872 92 5 2 chr6 81349711 81349982 -68167055 - L1_Mus1 LINE L1 -590 5293 5022 6 1205 2800 306 99 33 chr6 81349982 81351228 -68165809 - MTEa-int LTR MaLR -123 1247 1 6 1205 750 314 120 34 chr6 81351228 81351577 -68165460 - MTEa LTR MaLR 0 379 1 6 1205 272 250 63 63 chr6 81351848 81351959 -68165078 - MIRc SINE MIR -51 217 107 6 1205 361 230 215 35 chr6 81352251 81352395 -68164642 + RMER15 LTR ERVL 338 507 -68 6 1205 188 259 19 0 chr6 81352963 81353017 -68164020 - L2a LINE L2 -5 3421 3367 6 1205 486 322 96 52 chr6 81353208 81353480 -68163557 + B4A SINE B4 4 287 -5 6 1205 220 204 0 0 chr6 81353490 81353534 -68163503 + (CAGAGA)n Simple_repeat Simple_repeat 2 45 0 6 1205 2797 223 35 60 chr6 81354068 81355240 -68161797 + RMER1B Other Other 1 1010 -56 6 1205 252 95 0 45 chr6 81355513 81355557 -68161480 + L1_Mus3 LINE L1 4834 4875 -1008 6 1205 1607 100 16 24 chr6 81355662 81355917 -68161120 - L1_Mus3 LINE L1 0 6638 6386 6 1205 6862 114 22 1 chr6 81355933 81357643 -68159394 + L1_Mus3 LINE L1 4886 6633 -5 6 1205 25 0 0 0 chr6 81357652 81357677 -68159360 + AT_rich Low_complexity Low_complexity 1 25 0 6 1205 499 301 34 26 chr6 81357873 81358156 -68158881 + L1MA6 LINE L1 5877 6175 -125 6 1205 342 257 25 1 chr6 81358161 81358251 -68158786 + PB1D7 SINE Alu 22 112 -37 6 1205 306 180 0 0 chr6 81358720 81358781 -68158256 + (ATTG)n Simple_repeat Simple_repeat 4 64 0 6 1205 248 329 97 28 chr6 81358781 81358853 -68158184 - ID4 SINE ID -5 78 2 6 1205 362 230 0 13 chr6 81358875 81358950 -68158087 - ID_B1 SINE B4 -3 221 148 6 1205 468 0 0 0 chr6 81359073 81359125 -68157912 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1205 532 391 18 36 chr6 81359130 81359184 -68157853 + B4A SINE B4 17 69 -223 6 1205 1938 146 0 56 chr6 81359184 81359539 -68157498 + Lx3C LINE L1 6634 6968 -8 6 1205 532 391 18 36 chr6 81359539 81359765 -68157272 + B4A SINE B4 70 292 0 6 1205 387 281 39 10 chr6 81359782 81359886 -68157151 + PB1D10 SINE Alu 11 117 0 6 1205 202 204 0 22 chr6 81359893 81359938 -68157099 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 1205 454 315 104 101 chr6 81360854 81361122 -68155915 + B4 SINE B4 14 282 -10 6 1205 216 67 0 0 chr6 81361124 81361154 -68155883 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1205 207 69 0 0 chr6 81361415 81361444 -68155593 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1205 794 246 37 77 chr6 81361505 81361778 -68155259 - B4 SINE B4 -29 263 2 6 1205 1725 290 60 17 chr6 81362018 81362251 -68154786 - Lx8 LINE L1 -1 7472 7235 6 1205 717 12 0 0 chr6 81362251 81362333 -68154704 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 1205 1725 290 60 17 chr6 81362333 81362744 -68154293 - Lx8 LINE L1 -239 7234 6801 6 1205 333 0 0 0 chr6 81363142 81363179 -68153858 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1205 441 0 0 0 chr6 81363179 81363227 -68153810 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1205 834 313 0 0 chr6 81363227 81363438 -68153599 - ID_B1 SINE B4 -10 214 4 6 1205 288 0 0 0 chr6 81364222 81364254 -68152783 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 1205 411 78 0 0 chr6 81364254 81364318 -68152719 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1205 984 129 0 0 chr6 81364732 81364871 -68152166 + B1_Mus1 SINE Alu 2 140 -8 6 1205 473 161 14 0 chr6 81364872 81365015 -68152022 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 6 1205 255 208 25 111 chr6 81365255 81365336 -68151701 + Lx8 LINE L1 7264 7337 -136 6 1205 23 0 0 0 chr6 81365443 81365466 -68151571 + AT_rich Low_complexity Low_complexity 1 23 0 6 1205 26 82 0 0 chr6 81366036 81366097 -68150940 + AT_rich Low_complexity Low_complexity 1 61 0 6 1205 195 203 119 45 chr6 81366880 81366947 -68150090 + MIRb SINE MIR 46 117 -151 6 1205 369 0 0 0 chr6 81366972 81367013 -68150024 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1205 650 327 61 32 chr6 81367172 81367450 -68149587 + B4A SINE B4 3 288 -4 6 1205 484 282 68 9 chr6 81367591 81367723 -68149314 + B3 SINE B2 75 211 -5 6 1205 185 180 20 0 chr6 81367811 81367861 -68149176 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6 1205 312 281 41 0 chr6 81367898 81368069 -68148968 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 6 1205 202 273 30 0 chr6 81368484 81368550 -68148487 + GA-rich Low_complexity Low_complexity 1 68 0 6 1205 513 0 0 0 chr6 81369129 81369186 -68147851 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1205 498 243 131 155 chr6 81369663 81369960 -68147077 - MTD LTR MaLR -36 383 94 6 1205 661 122 19 13 chr6 81369981 81370139 -68146898 + (TA)n Simple_repeat Simple_repeat 1 159 0 6 1205 232 271 0 0 chr6 81371397 81371456 -68145581 - MTD LTR MaLR -320 59 1 6 1205 22 0 0 0 chr6 81372866 81372888 -68144149 + AT_rich Low_complexity Low_complexity 1 22 0 6 1205 605 311 141 0 chr6 81372943 81373242 -68143795 - Lx8 LINE L1 -86 7387 7047 6 1205 1224 278 30 3 chr6 81373282 81373617 -68143420 - Lx8 LINE L1 -542 6931 6588 6 1205 3849 62 10 0 chr6 81373663 81374147 -68142890 - L1_Mus1 LINE L1 0 6567 6079 6 1205 1092 88 7 0 chr6 81374359 81374506 -68142531 + B1_Mus1 SINE Alu 1 148 0 6 1205 209 33 33 0 chr6 81374508 81374538 -68142499 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1205 542 56 0 0 chr6 81374657 81374728 -68142309 + B1_Mm SINE Alu 75 145 -2 6 1205 821 81 8 0 chr6 81374864 81374987 -68142050 + (TG)n Simple_repeat Simple_repeat 2 125 0 6 1205 597 331 0 12 chr6 81374993 81375158 -68141879 - B4A SINE B4 -22 270 108 6 1205 227 314 102 78 chr6 81375046 81375174 -68141863 - B1F2 SINE Alu -8 141 11 6 1205 546 57 0 0 chr6 81376626 81376696 -68140341 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 1205 351 65 0 0 chr6 81376696 81376742 -68140295 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 1205 407 326 29 36 chr6 81376759 81376899 -68140138 - RSINE1 SINE B4 -25 140 2 6 1205 365 310 114 24 chr6 81378036 81378370 -68138667 - L1MB8 LINE L1 -89 6089 5726 6 1205 387 0 0 0 chr6 81378380 81378423 -68138614 + (TTAG)n Simple_repeat Simple_repeat 2 44 0 6 1205 1050 93 0 0 chr6 81378423 81378563 -68138474 - B2_Mm2 SINE B2 -35 160 21 6 1205 518 335 88 13 chr6 81378639 81378878 -68138159 + MTEa LTR MaLR 3 259 -120 6 1205 458 283 0 7 chr6 81378887 81379026 -68138011 - HAL1-2a_MD LINE L1 -545 2479 2342 7 1205 217 65 0 80 chr6 81379106 81379156 -68137881 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 7 1205 321 350 16 24 chr6 81379156 81379281 -68137756 + MT2A LTR ERVL 335 458 -75 7 1205 596 232 58 7 chr6 81379281 81379420 -68137617 + MT2A LTR ERVL 3 148 -385 7 1205 794 294 19 31 chr6 81379444 81379600 -68137437 + MT2A LTR ERVL 275 431 -102 7 1205 333 0 0 0 chr6 81379600 81379637 -68137400 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1205 794 294 19 31 chr6 81379637 81379740 -68137297 + MT2A LTR ERVL 432 531 -2 7 1205 235 254 0 0 chr6 81379812 81379871 -68137166 - L1MB8 LINE L1 -597 5587 5529 6 1205 232 281 103 17 chr6 81379940 81380114 -68136923 - L1MB8 LINE L1 -743 5403 5215 6 1205 1081 292 55 3 chr6 81380193 81380519 -68136518 - MER2 DNA MER2_type -1 344 2 7 1205 462 289 122 45 chr6 81380521 81380807 -68136230 - L1MC LINE L1 -1247 4899 4592 7 1205 263 236 0 18 chr6 81381478 81381534 -68135503 + MTE2b LTR MaLR 1 55 -324 7 1205 990 270 70 54 chr6 81381534 81381847 -68135190 - RMER15 LTR ERVL 0 575 258 7 1205 344 344 112 38 chr6 81381920 81382259 -68134778 + MT2A LTR ERVL 99 462 -71 7 1205 207 0 0 0 chr6 81382497 81382520 -68134517 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1205 666 206 15 82 chr6 81382574 81382780 -68134257 + B2_Mm2 SINE B2 2 193 -2 7 1205 336 91 19 57 chr6 81382845 81382950 -68134087 + T-rich Low_complexity Low_complexity 3 103 0 7 1205 207 326 98 0 chr6 81383256 81383388 -68133649 + MIR SINE MIR 104 248 -14 7 1205 395 255 47 16 chr6 81383437 81383628 -68133409 + L1MA4 LINE L1 5719 5915 -385 7 1205 270 0 0 0 chr6 81383693 81383723 -68133314 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1205 2421 222 12 16 chr6 81384023 81384540 -68132497 + Lx5 LINE L1 6531 7045 -5 7 1205 211 258 168 21 chr6 81385321 81385416 -68131621 + MIRb SINE MIR 128 236 -32 7 1205 502 289 58 135 chr6 81386385 81386446 -68130591 + B3A SINE B2 1 54 -144 7 1205 626 56 93 9 chr6 81386446 81386554 -68130483 + L1Md_F2 LINE L1 6466 6582 0 7 1205 502 289 58 135 chr6 81386554 81386568 -68130469 + B3A SINE B2 55 55 -143 7 1205 528 16 0 0 chr6 81386568 81386629 -68130408 + (GAA)n Simple_repeat Simple_repeat 2 62 0 7 1205 502 289 58 135 chr6 81386629 81386760 -68130277 + B3A SINE B2 55 192 -6 7 1205 367 341 77 34 chr6 81386823 81387032 -68130005 + L1MEg LINE L1 39 256 -5828 7 1205 1161 64 0 0 chr6 81387359 81387499 -68129538 + B1_Mus1 SINE Alu 2 141 -7 7 1205 216 0 0 0 chr6 81387502 81387526 -68129511 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1205 1496 57 0 15 chr6 81387763 81387959 -68129078 + B2_Mm1t SINE B2 1 193 0 7 1205 722 283 14 10 chr6 81388133 81388340 -68128697 + B3 SINE B2 1 208 -8 7 1205 203 242 45 0 chr6 81388403 81388469 -68128568 + GA-rich Low_complexity Low_complexity 4 72 0 7 1205 677 186 358 10 chr6 81388967 81389168 -68127869 + MTD LTR MaLR 1 271 -148 7 1205 483 33 0 0 chr6 81389250 81389311 -68127726 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1205 227 79 26 0 chr6 81389900 81389938 -68127099 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 7 1205 802 322 55 26 chr6 81390507 81390886 -68126151 + Lx8 LINE L1 6867 7256 -217 7 1205 321 248 0 60 chr6 81391246 81391362 -68125675 + Lx8 LINE L1 7360 7468 -5 7 1205 583 296 23 6 chr6 81391460 81391633 -68125404 - MER2 DNA MER2_type -42 303 128 7 1205 251 367 50 50 chr6 81391956 81391986 -68125051 - B3 SINE B2 -15 201 1 7 1205 643 292 18 58 chr6 81391986 81392157 -68124880 - RSINE1 SINE B4 0 165 2 7 1205 494 320 6 0 chr6 81392616 81392772 -68124265 + RSINE1 SINE B4 2 158 -7 7 1205 494 282 106 28 chr6 81393042 81393221 -68123816 - B3A SINE B2 0 198 6 7 1205 1735 198 106 0 chr6 81393254 81393633 -68123404 + MTD LTR MaLR 1 419 0 7 1205 627 279 11 11 chr6 81394499 81394680 -68122357 - B3A SINE B2 -16 182 2 7 1205 266 403 33 33 chr6 81395129 81395311 -68121726 - LTR33 LTR ERVL 0 515 334 7 150 851 277 40 117 chr6 81395316 81395761 -68121276 + MTD LTR MaLR 7 417 -2 7 1206 412 297 34 107 chr6 81395832 81396009 -68121028 + MER5A DNA MER1_type 24 187 -2 7 1206 243 128 82 41 chr6 81396013 81396062 -68120975 - ORR1C2 LTR MaLR -11 367 317 7 1206 241 93 18 18 chr6 81396066 81396121 -68120916 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 7 1206 1642 159 65 0 chr6 81396126 81396419 -68120618 - ORR1C2 LTR MaLR -74 310 11 7 1206 1132 61 0 13 chr6 81397033 81397182 -68119855 + B1_Mus1 SINE Alu 2 148 0 7 1206 222 37 0 0 chr6 81397182 81397209 -68119828 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 7 1206 234 352 11 21 chr6 81397233 81397326 -68119711 - MIRb SINE MIR -131 137 46 7 1206 1081 233 206 12 chr6 81397818 81398147 -68118890 - MTD LTR MaLR 0 419 25 7 1206 597 293 30 69 chr6 81398147 81398349 -68118688 + B3A SINE B2 4 197 -1 7 1206 844 289 37 101 chr6 81399253 81399658 -68117379 + MTE2a LTR MaLR 1 379 0 7 1206 25 75 0 0 chr6 81399865 81399918 -68117119 + AT_rich Low_complexity Low_complexity 1 53 0 7 1206 1030 266 146 40 chr6 81399926 81400023 -68117014 - Lx6 LINE L1 -612 6438 6353 7 1206 180 0 0 0 chr6 81400023 81400043 -68116994 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1206 1208 241 144 29 chr6 81400043 81400501 -68116536 - Lx6 LINE L1 -698 6352 5824 7 1206 837 267 60 43 chr6 81400494 81400776 -68116261 + Lx6 LINE L1 7145 7431 -29 7 1206 237 33 0 0 chr6 81400828 81400858 -68116179 + (CAA)n Simple_repeat Simple_repeat 1 30 0 7 1206 299 305 38 62 chr6 81401641 81401726 -68115311 + L1MC3 LINE L1 6676 6760 -1282 7 1206 525 58 0 0 chr6 81401726 81401795 -68115242 + (CA)n Simple_repeat Simple_repeat 1 69 0 7 1206 430 265 135 95 chr6 81401795 81402207 -68114830 + L1MC3 LINE L1 6720 7128 -657 7 1206 967 97 0 11 chr6 81403266 81403444 -68113593 + (TC)n Simple_repeat Simple_repeat 1 176 0 7 1206 368 173 160 0 chr6 81403996 81404071 -68112966 + B1_Mur1 SINE Alu 37 123 -26 7 1206 341 161 0 11 chr6 81404081 81404169 -68112868 + GA-rich Low_complexity Low_complexity 2 88 0 7 1206 474 18 0 0 chr6 81405091 81405146 -68111891 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1206 404 303 61 68 chr6 81405510 81405673 -68111364 - MER58A DNA MER1_type -46 178 17 7 1206 300 210 0 46 chr6 81405921 81405986 -68111051 - ID4_ SINE ID -7 76 15 7 1206 387 0 0 0 chr6 81406171 81406214 -68110823 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 7 1206 1686 306 94 19 chr6 81406224 81407011 -68110026 + Lx9 LINE L1 6348 7193 -451 7 1206 425 286 83 17 chr6 81407078 81407380 -68109657 + Lx9 LINE L1 7314 7635 -9 7 1206 339 181 0 0 chr6 81407553 81407625 -68109412 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1206 263 304 0 0 chr6 81407665 81407767 -68109270 - L1MA4 LINE L1 -388 5912 5811 7 1206 323 259 0 182 chr6 81407804 81407903 -68109134 - B1F SINE Alu -15 112 32 7 1206 236 233 27 27 chr6 81409048 81409123 -68107914 + (TTGG)n Simple_repeat Simple_repeat 1 75 0 7 1206 212 31 0 59 chr6 81409171 81409205 -68107832 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 7 1206 216 0 0 0 chr6 81409207 81409231 -68107806 + (CTTG)n Simple_repeat Simple_repeat 1 24 0 7 1206 543 359 54 32 chr6 81409293 81409572 -68107465 + MER74C LTR ERVL 17 301 -159 7 1206 204 237 0 0 chr6 81409580 81409618 -68107419 + polypyrimidine Low_complexity Low_complexity 2 39 0 7 1206 325 70 35 0 chr6 81409620 81409677 -68107360 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 1206 276 277 62 0 chr6 81409695 81409760 -68107277 + B4 SINE B4 9 77 -215 7 1206 2031 158 24 0 chr6 81409762 81410091 -68106946 - ORR1B1 LTR MaLR -30 364 28 7 1206 586 323 65 10 chr6 81410090 81410290 -68106747 + B4A SINE B4 80 290 -2 7 1206 183 129 0 0 chr6 81410305 81410336 -68106701 + (CATA)n Simple_repeat Simple_repeat 4 34 0 7 1206 404 318 18 0 chr6 81410414 81410524 -68106513 + MER110 LTR ERV1 380 491 0 7 1206 184 305 31 31 chr6 81410898 81410996 -68106041 - MIRb SINE MIR -56 212 115 7 1206 306 248 409 0 chr6 81411579 81411728 -68105309 - B3 SINE B2 -6 210 1 7 1206 21 36 0 0 chr6 81412531 81412559 -68104478 + AT_rich Low_complexity Low_complexity 1 28 0 7 1206 646 304 19 0 chr6 81412561 81412719 -68104318 - RSINE1 SINE B4 0 165 5 7 1206 318 308 82 8 chr6 81413004 81413138 -68103899 + RSINE1 SINE B4 3 146 -19 7 1206 530 275 99 0 chr6 81413514 81413656 -68103381 - B3A SINE B2 -42 156 1 7 1206 432 372 23 68 chr6 81413729 81413994 -68103043 - ORR1E LTR MaLR -104 255 3 7 1206 425 294 12 12 chr6 81414966 81415138 -68101899 + Lx9 LINE L1 7253 7424 -220 7 1206 22 0 0 0 chr6 81415160 81415182 -68101855 + AT_rich Low_complexity Low_complexity 1 22 0 7 1206 662 314 29 0 chr6 81417951 81418161 -68098876 - ID_B1 SINE B4 -8 216 1 7 1206 342 0 0 0 chr6 81419018 81419056 -68097981 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1206 761 320 30 25 chr6 81419061 81419263 -68097774 - B4 SINE B4 -10 282 80 7 1206 30 27 0 0 chr6 81419263 81419300 -68097737 + AT_rich Low_complexity Low_complexity 1 37 0 7 1206 676 301 12 30 chr6 81419747 81419915 -68097122 - B3A SINE B2 -33 165 1 7 1206 360 274 63 0 chr6 81419915 81420005 -68097032 - B4 SINE B4 -194 98 3 7 1206 916 169 128 22 chr6 81420375 81420648 -68096389 - Lx7 LINE L1 0 7696 7395 7 1206 427 95 27 0 chr6 81422069 81422143 -68094894 + (TA)n Simple_repeat Simple_repeat 2 77 0 7 1206 473 322 38 33 chr6 81423440 81423623 -68093414 + B3A SINE B2 1 184 -14 7 1206 538 273 19 62 chr6 81423789 81423993 -68093044 + B3A SINE B2 2 195 0 7 1206 604 328 39 71 chr6 81424518 81424918 -68092119 - L1M2 LINE L1 -3063 3080 2691 7 1206 784 265 9 0 chr6 81424918 81425129 -68091908 + B3 SINE B2 4 216 0 7 1206 604 328 39 71 chr6 81425129 81425316 -68091721 - L1M2 LINE L1 -3453 2690 2512 7 1206 321 278 98 23 chr6 81425594 81425749 -68091288 + L1M3 LINE L1 3071 3237 -2903 7 1206 1138 49 7 7 chr6 81425749 81425892 -68091145 + B1_Mm SINE Alu 2 144 -3 7 1206 186 71 0 0 chr6 81425892 81425920 -68091117 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1206 321 278 98 23 chr6 81425920 81426161 -68090876 + L1M3 LINE L1 3238 3497 -2643 7 1206 288 315 126 45 chr6 81426282 81426551 -68090486 + L1M3 LINE L1 3830 4120 -2023 7 1206 475 293 160 0 chr6 81426556 81426737 -68090300 + B3 SINE B2 1 210 -6 7 1206 512 127 26 26 chr6 81426785 81426898 -68090139 - L1Md_F2 LINE L1 0 6582 6470 8 1206 12227 73 8 4 chr6 81426898 81429121 -68087916 - L1Md_F2 LINE L1 -202 6380 4150 8 1206 6009 98 2 21 chr6 81429125 81430918 -68086119 - L1Md_F2 LINE L1 -3744 2139 380 8 1206 7059 70 5 1 chr6 81431007 81431964 -68085073 - L1Md_F2 LINE L1 -12 6570 5610 8 1206 189 0 0 0 chr6 81432742 81432763 -68084274 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 1206 352 243 0 13 chr6 81432763 81432838 -68084199 - B4A SINE B4 -208 84 11 8 1206 405 0 0 0 chr6 81432948 81432993 -68084044 + (GA)n Simple_repeat Simple_repeat 1 45 0 8 1206 305 276 86 62 chr6 81433197 81433359 -68083678 + HAL1-3A_ME LINE L1 2278 2443 -415 8 1206 1086 277 57 34 chr6 81434052 81434403 -68082634 + MTD LTR MaLR 61 419 0 8 1206 528 256 83 0 chr6 81434893 81435014 -68082023 + B3A SINE B2 6 136 -62 8 1206 329 230 10 0 chr6 81435085 81435185 -68081852 + (CA)n Simple_repeat Simple_repeat 2 102 0 8 1206 401 115 13 0 chr6 81436143 81436221 -68080816 + (TG)n Simple_repeat Simple_repeat 2 80 0 8 1206 286 366 20 10 chr6 81436253 81436355 -68080682 - B4A SINE B4 -4 288 186 8 1206 333 306 102 20 chr6 81437106 81437253 -68079784 - MER20 DNA MER1_type -60 159 1 8 1206 870 261 38 90 chr6 81438553 81438919 -68078118 + ORR1E LTR MaLR 13 359 0 8 1206 534 231 165 24 chr6 81439121 81439285 -68077752 + B3A SINE B2 2 188 -10 8 1206 341 43 21 0 chr6 81439431 81439478 -68077559 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1206 300 176 44 0 chr6 81440013 81440104 -68076933 + (CATA)n Simple_repeat Simple_repeat 4 98 0 8 1206 3111 61 8 2 chr6 81440104 81440498 -68076539 + MTA_Mm LTR MaLR 1 396 0 8 1206 4967 133 37 7 chr6 81440498 81441332 -68075705 + MTA_Mm-int LTR MaLR 3 861 -397 8 1206 3571 76 10 4 chr6 81441332 81441819 -68075218 + RLTR1C LTR ERV1 1 490 -13 8 1206 1969 77 67 13 chr6 81441835 81442151 -68074886 + MTA_Mm-int LTR MaLR 766 1098 0 8 1206 3133 48 10 2 chr6 81442151 81442544 -68074493 + MTA_Mm LTR MaLR 1 396 0 8 1206 30 27 0 0 chr6 81442698 81442735 -68074302 + AT_rich Low_complexity Low_complexity 1 37 0 8 1206 23 33 0 0 chr6 81442907 81442937 -68074100 + AT_rich Low_complexity Low_complexity 1 30 0 8 1206 335 336 77 63 chr6 81443052 81443195 -68073842 - RSINE1 SINE B4 -18 147 3 8 1206 378 245 20 50 chr6 81443281 81443380 -68073657 + PB1D9 SINE Alu 22 117 -3 8 1206 446 296 36 15 chr6 81443729 81443866 -68073171 - B1F SINE Alu -7 142 3 8 1206 264 276 70 79 chr6 81443899 81443912 -68073125 + MT2B LTR ERVL 145 156 -445 8 1206 440 254 51 26 chr6 81443912 81444029 -68073008 + PB1D9 SINE Alu 1 120 0 8 1206 281 327 59 10 chr6 81444188 81444290 -68072747 + B1F SINE Alu 23 129 -20 8 1206 5981 87 0 1 chr6 81444651 81445514 -68071523 + L1_Mus1 LINE L1 5767 6567 0 8 1206 426 39 0 0 chr6 81445592 81445644 -68071393 + (GAAAA)n Simple_repeat Simple_repeat 4 55 0 8 1206 204 200 0 0 chr6 81445716 81445766 -68071271 + GA-rich Low_complexity Low_complexity 3 52 0 8 1206 381 329 11 3 chr6 81446851 81447000 -68070037 - MLT1A LTR MaLR 0 374 216 8 1206 471 107 0 0 chr6 81447086 81447161 -68069876 + (GA)n Simple_repeat Simple_repeat 1 75 0 8 1206 26 0 0 0 chr6 81447554 81447580 -68069457 + AT_rich Low_complexity Low_complexity 1 26 0 8 1206 4198 69 8 0 chr6 81447587 81448253 -68068784 - Lx3_Mus LINE L1 -1019 5990 5320 8 1206 7308 69 17 0 chr6 81448253 81449239 -68067798 + Lx3_Mus LINE L1 5999 7001 -8 8 1206 2005 216 25 27 chr6 81449708 81450112 -68066925 - MTD LTR MaLR -8 411 9 8 1206 463 342 130 37 chr6 81450124 81450501 -68066536 - MLT1D LTR MaLR -72 433 22 8 1206 3844 171 82 74 chr6 81450935 81451818 -68065219 - RMER19B LTR ERVK -12 890 1 8 1206 1511 258 26 24 chr6 81452085 81452541 -68064496 + Lx8 LINE L1 6858 7314 -159 8 1206 339 261 82 3 chr6 81452538 81452714 -68064323 - L1M2 LINE L1 -923 5220 5005 8 1206 884 58 7 35 chr6 81452874 81452911 -68064126 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 8 1206 1051 102 17 0 chr6 81452911 81453087 -68063950 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 8 1206 884 58 7 35 chr6 81453087 81453192 -68063845 + (GGAA)n Simple_repeat Simple_repeat 1 101 0 8 1206 589 272 68 7 chr6 81453223 81453371 -68063666 + RSINE1 SINE B4 9 165 0 8 1206 413 103 15 0 chr6 81453372 81453440 -68063597 + (CATA)n Simple_repeat Simple_repeat 4 72 0 8 1206 27 29 0 0 chr6 81453487 81453521 -68063516 + AT_rich Low_complexity Low_complexity 1 34 0 8 1206 463 264 129 78 chr6 81454045 81454185 -68062852 - B4A SINE B4 -22 270 102 8 1206 2549 63 3 32 chr6 81454185 81454527 -68062510 - IAPEY3_LTR LTR ERVK 0 332 1 8 1206 463 264 129 78 chr6 81454527 81454641 -68062396 - B4A SINE B4 -191 101 3 8 1206 533 212 148 26 chr6 81455200 81455389 -68061648 - ID_B1 SINE B4 -11 213 2 8 1206 306 0 0 0 chr6 81455435 81455469 -68061568 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1206 478 289 96 54 chr6 81456471 81456731 -68060306 + B4A SINE B4 3 273 -19 8 1206 234 0 0 0 chr6 81456746 81456772 -68060265 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1206 427 316 37 37 chr6 81456849 81457010 -68060027 + MLT1B LTR MaLR 1 161 -229 8 1206 465 90 0 0 chr6 81457030 81457097 -68059940 + (TA)n Simple_repeat Simple_repeat 2 68 0 8 1206 280 221 57 29 chr6 81457107 81457177 -68059860 - B1F SINE Alu -25 124 53 8 1206 319 222 56 95 chr6 81457177 81457302 -68059735 - L1MA8 LINE L1 -9 6282 6165 8 1206 529 316 20 30 chr6 81457302 81457501 -68059536 - B3A SINE B2 -1 197 1 8 1206 319 222 56 95 chr6 81457501 81457554 -68059483 - L1MA8 LINE L1 -127 6164 6111 8 1206 677 295 11 27 chr6 81457573 81457761 -68059276 - B3A SINE B2 -12 186 2 8 1206 376 253 133 68 chr6 81457820 81458142 -68058895 - L1MA8 LINE L1 -263 6028 5686 8 1206 666 275 70 62 chr6 81458632 81458985 -68058052 + L1MB5 LINE L1 5794 6154 -20 8 1206 23 33 0 0 chr6 81459165 81459195 -68057842 + AT_rich Low_complexity Low_complexity 1 30 0 8 1206 387 241 91 134 chr6 81459199 81459453 -68057584 + L1M2 LINE L1 5366 5608 -704 8 1206 664 241 7 0 chr6 81459453 81459594 -68057443 + B1_Mus2 SINE Alu 1 142 -5 8 1206 637 303 42 63 chr6 81460230 81460519 -68056518 - ORR1E LTR MaLR 0 370 28 8 1206 753 271 190 33 chr6 81460532 81460864 -68056173 + MTD LTR MaLR 21 404 -15 8 1206 750 279 156 32 chr6 81460881 81461305 -68055732 + Tigger7 DNA MER2_type 46 537 -1954 8 1206 2439 80 6 3 chr6 81461305 81461632 -68055405 + L1_Mus3 LINE L1 6308 6635 -3 8 1206 307 239 92 98 chr6 81461632 81461701 -68055336 + Tigger7 DNA MER2_type 2315 2384 -107 8 1206 230 311 0 39 chr6 81461720 81461847 -68055190 + (TA)n Simple_repeat Simple_repeat 1 122 0 8 1206 503 171 0 9 chr6 81461876 81461982 -68055055 + (CA)n Simple_repeat Simple_repeat 2 106 0 8 1206 589 257 89 56 chr6 81462898 81463112 -68053925 - ID_B1 SINE B4 -2 222 2 8 1206 286 306 83 0 chr6 81463227 81463323 -68053714 + ID4 SINE ID 2 109 -43 8 1206 368 313 86 27 chr6 81463345 81463637 -68053400 - L1MA6 LINE L1 -201 6099 5791 8 1206 1308 274 55 29 chr6 81463840 81464453 -68052584 - L1MA6 LINE L1 -768 5375 4747 8 1206 230 288 101 14 chr6 81464998 81465146 -68051891 - L1MA6 LINE L1 -1424 4719 4559 8 1206 1420 243 19 95 chr6 81465159 81465569 -68051468 + MTE2a LTR MaLR 1 379 0 8 1206 697 312 89 37 chr6 81466367 81466859 -68050178 - Lx9 LINE L1 -27 7617 7100 8 1206 1263 275 76 42 chr6 81467737 81468208 -68048829 + Lx8 LINE L1 6808 7309 -164 8 1206 510 17 0 0 chr6 81468208 81468267 -68048770 + (CCA)n Simple_repeat Simple_repeat 1 59 0 8 1206 1263 275 76 42 chr6 81468267 81468371 -68048666 + Lx8 LINE L1 7310 7403 -70 8 1206 1628 142 64 24 chr6 81468543 81468839 -68048198 + MTC LTR MaLR 5 312 -109 8 1206 7981 29 9 0 chr6 81468843 81470194 -68046843 - L1Md_T LINE L1 0 6582 5225 8 1206 576 239 0 9 chr6 81470194 81470308 -68046729 + MTC LTR MaLR 309 421 0 8 1206 2014 241 13 158 chr6 81470324 81470729 -68046308 + ORR1A2-int LTR MaLR 54 443 -815 8 1206 1265 34 0 0 chr6 81470729 81470876 -68046161 + B1_Mm SINE Alu 1 147 0 8 1206 2014 231 10 169 chr6 81470876 81471171 -68045866 + ORR1A2-int LTR MaLR 444 649 -609 8 1206 5498 140 93 2 chr6 81471182 81472121 -68044916 + ORR1A2-int LTR MaLR 939 1962 -1 8 1206 1804 129 6 76 chr6 81472122 81472450 -68044587 + ORR1A2 LTR MaLR 1 305 -22 8 1206 449 215 0 27 chr6 81472454 81472564 -68044473 + MTC-int LTR MaLR 1151 1257 -1 8 1206 1305 267 38 6 chr6 81473067 81473432 -68043605 + MTE2b LTR MaLR 3 379 0 8 1206 328 262 198 43 chr6 81473585 81473772 -68043265 + B3 SINE B2 1 216 0 8 1206 210 118 0 0 chr6 81473963 81473997 -68043040 + (CATA)n Simple_repeat Simple_repeat 3 36 0 8 1206 402 136 0 0 chr6 81475254 81475335 -68041702 + (TC)n Simple_repeat Simple_repeat 2 82 0 8 1206 227 246 0 0 chr6 81475338 81475403 -68041634 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1206 1092 239 170 23 chr6 81475404 81475746 -68041291 + MTD LTR MaLR 14 405 -14 8 1206 234 333 64 0 chr6 81476120 81476198 -68040839 + MLT1A1 LTR MaLR 2 84 -324 8 1206 9760 85 24 9 chr6 81476271 81478440 -68038597 + MusHAL1 LINE L1 4 2165 -1188 8 1206 586 266 22 5 chr6 81478454 81478639 -68038398 + Lx7 LINE L1 7180 7367 -329 8 1206 3159 30 0 0 chr6 81478735 81479107 -68037930 - L1Md_T LINE L1 0 6582 6211 8 1206 1963 175 34 19 chr6 81479490 81479868 -68037169 - ORR1C2 LTR MaLR 0 384 1 8 1206 872 263 9 18 chr6 81480271 81480488 -68036549 + B3 SINE B2 1 215 -1 8 1206 790 236 0 0 chr6 81480799 81480943 -68036094 + B1_Mur1 SINE Alu 6 149 0 8 1206 603 201 22 2 chr6 81482017 81482146 -68034891 - MTD LTR MaLR -16 403 247 8 1206 396 0 0 0 chr6 81482186 81482230 -68034807 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 8 1206 984 116 12 6 chr6 81482231 81482404 -68034633 + (GAAAA)n Simple_repeat Simple_repeat 3 176 0 8 1206 708 241 23 35 chr6 81482405 81482577 -68034460 - MTD LTR MaLR -237 182 13 8 1206 30534 78 2 3 chr6 81482721 81487905 -68029132 + L1Md_F2 LINE L1 399 5574 -309 8 1206 7834 50 6 2 chr6 81487906 81488890 -68028147 + L1Md_F2 LINE L1 5592 6579 -3 8 1206 567 0 0 0 chr6 81488911 81488974 -68028063 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 8 1206 252 0 0 0 chr6 81489136 81489164 -68027873 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1206 662 282 125 11 chr6 81489480 81489752 -68027285 - RMER15 LTR ERVL 0 575 273 8 1206 21 36 0 0 chr6 81491417 81491445 -68025592 + AT_rich Low_complexity Low_complexity 1 28 0 8 1206 368 299 105 29 chr6 81491488 81491698 -68025339 + Charlie8 DNA MER1_type 43 268 -2160 8 1206 35 88 0 0 chr6 81491946 81492037 -68025000 + AT_rich Low_complexity Low_complexity 1 91 0 9 1206 186 43 0 0 chr6 81492043 81492066 -68024971 + (TA)n Simple_repeat Simple_repeat 1 23 0 9 1206 447 35 0 0 chr6 81492491 81492548 -68024489 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1206 615 251 48 16 chr6 81493391 81493577 -68023460 + B3A SINE B2 1 192 -6 9 1206 287 264 27 48 chr6 81494159 81494306 -68022731 - Tigger7 DNA MER2_type -40 2451 2308 9 1206 494 271 16 8 chr6 81494404 81494527 -68022510 + B4A SINE B4 137 260 -32 9 1206 440 299 38 38 chr6 81494510 81494537 -68022500 - Tigger7 DNA MER2_type -149 2342 2316 9 1206 330 67 0 0 chr6 81494537 81494582 -68022455 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1206 440 299 38 38 chr6 81494582 81494766 -68022271 - Tigger7 DNA MER2_type -176 2315 2132 9 1206 545 333 128 30 chr6 81494768 81495034 -68022003 - Tigger7 DNA MER2_type -2183 308 17 9 1206 561 210 92 0 chr6 81495250 81495369 -68021668 - RSINE1 SINE B4 -9 156 27 9 1206 288 300 29 20 chr6 81495758 81495860 -68021177 + MER5A DNA MER1_type 59 161 -28 9 1206 270 0 0 0 chr6 81495923 81495953 -68021084 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1206 198 0 0 0 chr6 81495953 81495974 -68021063 + (CG)n Simple_repeat Simple_repeat 2 23 0 9 1206 298 310 25 110 chr6 81495978 81496068 -68020969 - B3A SINE B2 -49 149 57 9 1206 1746 79 0 28 chr6 81496068 81496316 -68020721 + L1_Mus1 LINE L1 6321 6561 -6 9 1206 298 310 25 110 chr6 81496316 81496388 -68020649 - B3A SINE B2 -142 56 1 9 1206 243 0 0 0 chr6 81496399 81496426 -68020611 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 9 1206 961 266 5 0 chr6 81497193 81497400 -68019637 - B3 SINE B2 0 216 9 9 1206 2521 105 125 9 chr6 81497772 81498196 -68018841 - IAPLTR2_Mm LTR ERVK -2 473 1 9 1206 316 239 20 205 chr6 81498557 81498752 -68018285 + RMER15 LTR ERVL 1 159 -416 9 1206 1105 292 24 3 chr6 81498751 81499046 -68017991 + RMER15 LTR ERVL 275 575 0 9 1206 186 43 0 0 chr6 81499334 81499357 -68017680 + (GGGAGA)n Simple_repeat Simple_repeat 3 25 0 9 1206 279 320 0 37 chr6 81499402 81499483 -68017554 - B4 SINE B4 0 292 215 9 1206 224 122 0 24 chr6 81499486 81499528 -68017509 + (TTA)n Simple_repeat Simple_repeat 3 43 0 9 1206 452 347 78 15 chr6 81499533 81499738 -68017299 - B4 SINE B4 -72 220 3 9 1206 512 281 58 15 chr6 81499863 81500000 -68017037 - B4A SINE B4 -16 276 134 9 1206 474 301 24 8 chr6 81500000 81500124 -68016913 - B4A SINE B4 -161 131 6 1 1206 571 282 32 0 chr6 81500633 81500757 -68016280 + RSINE1 SINE B4 5 132 -33 2 1206 407 79 32 0 chr6 81500765 81500828 -68016209 + (CATA)n Simple_repeat Simple_repeat 4 68 0 3 1206 21 0 0 0 chr6 81500881 81500902 -68016135 + AT_rich Low_complexity Low_complexity 1 21 0 4 1206 4888 78 27 108 chr6 81501136 81501953 -68015084 + RMER17A LTR ERVK 1 751 0 5 1206 931 235 115 33 chr6 81502378 81502682 -68014355 - RMER15 LTR ERVL -4 571 243 6 1206 690 13 0 0 chr6 81502717 81502796 -68014241 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 1206 710 149 15 22 chr6 81502805 81502942 -68014095 + Lx4A LINE L1 6923 7058 0 8 1206 673 287 0 0 chr6 81503191 81503327 -68013710 + RSINE1 SINE B4 1 136 -29 9 1206 354 45 0 0 chr6 81503328 81503372 -68013665 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1206 399 311 26 37 chr6 81503621 81503811 -68013226 - L1_Rod LINE L1 -712 5585 5377 1 1206 889 293 34 19 chr6 81503901 81504169 -68012868 - MTD LTR MaLR -146 273 2 1 1206 227 31 0 30 chr6 81504219 81504252 -68012785 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1 1206 778 175 29 21 chr6 81504253 81504393 -68012644 - B1_Mur2 SINE Alu -8 141 1 1 1206 439 252 0 96 chr6 81504393 81504424 -68012613 - MT2B LTR ERVL -449 152 135 1 1206 504 239 0 0 chr6 81505742 81505905 -68011132 + (TG)n Simple_repeat Simple_repeat 1 163 0 1 1206 408 307 86 13 chr6 81505905 81506057 -68010980 - RSINE1 SINE B4 0 165 3 1 1206 2320 120 6 15 chr6 81506879 81507200 -68009837 + Lx3A LINE L1 6645 6966 -15 1 1206 564 15 0 0 chr6 81507200 81507265 -68009772 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 1 1206 2320 120 6 15 chr6 81507265 81507282 -68009755 + Lx3A LINE L1 6967 6980 -1 1 1206 684 302 52 0 chr6 81507344 81507516 -68009521 + B3A SINE B2 2 182 -16 2 1206 215 308 26 80 chr6 81507926 81508039 -68008998 + MIR3 SINE MIR 81 187 -21 2 1206 238 279 63 119 chr6 81508272 81508398 -68008639 + MLT1A1 LTR MaLR 290 408 0 2 1206 283 253 29 78 chr6 81508673 81508776 -68008261 + RMER15 LTR ERVL 299 396 -179 2 1206 272 266 51 76 chr6 81508824 81508942 -68008095 + RLTR20A2 LTR ERVK 77 191 -387 2 1206 415 193 51 102 chr6 81509118 81509216 -68007821 + RMER15 LTR ERVL 392 484 -91 2 1206 282 29 0 0 chr6 81509248 81509283 -68007754 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1206 333 0 0 0 chr6 81509283 81509319 -68007718 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1206 636 275 174 40 chr6 81510349 81510501 -68006536 - MTD LTR MaLR -12 407 214 2 1206 585 0 0 0 chr6 81510501 81510566 -68006471 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1206 636 275 174 40 chr6 81510566 81510735 -68006302 - MTD LTR MaLR -206 213 43 2 1206 956 276 52 39 chr6 81510865 81511151 -68005886 + B4 SINE B4 3 292 0 2 1206 534 316 83 6 chr6 81511486 81511655 -68005382 + MTE2b LTR MaLR 1 182 -197 3 1206 1558 197 13 41 chr6 81511655 81511972 -68005065 + Lx9 LINE L1 6519 6826 -818 3 1206 315 303 53 40 chr6 81512300 81512451 -68004586 + MLT1L LTR MaLR 123 275 -335 3 1206 372 77 0 0 chr6 81512657 81512709 -68004328 + (GTTTG)n Simple_repeat Simple_repeat 2 53 0 3 1206 211 312 100 74 chr6 81512858 81513048 -68003989 + MIR3 SINE MIR 9 203 -5 3 1206 733 292 91 9 chr6 81513812 81514043 -68002994 - B4A SINE B4 -14 278 29 3 1206 273 29 0 0 chr6 81514726 81514760 -68002277 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1206 555 16 0 0 chr6 81514760 81514823 -68002214 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1206 515 271 9 0 chr6 81514833 81514940 -68002097 - B3A SINE B2 -74 124 17 3 1206 21045 55 3 1 chr6 81515400 81518746 -67998291 - L1Md_F3 LINE L1 0 6584 3231 3 1206 23 54 0 0 chr6 81518812 81518849 -67998188 + AT_rich Low_complexity Low_complexity 1 37 0 4 1206 23 0 0 0 chr6 81518959 81518982 -67998055 + AT_rich Low_complexity Low_complexity 1 23 0 4 1206 511 308 57 8 chr6 81519061 81519326 -67997711 + L1MA5 LINE L1 5900 6177 -123 4 1206 363 23 0 0 chr6 81519412 81519456 -67997581 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1206 794 295 32 0 chr6 81519458 81519648 -67997389 - B3 SINE B2 -20 196 1 4 1206 769 250 63 96 chr6 81519838 81520139 -67996898 + B4A SINE B4 2 292 0 4 1206 318 167 0 0 chr6 81520139 81520199 -67996838 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1206 313 279 8 39 chr6 81520409 81520536 -67996501 - MER2 DNA MER2_type -130 215 93 4 1206 345 254 14 0 chr6 81520667 81520738 -67996299 + ID4_ SINE ID 3 74 -9 4 1206 331 299 182 45 chr6 81520868 81520925 -67996112 - RMER15 LTR ERVL -22 553 490 4 1206 204 40 0 0 chr6 81520925 81520950 -67996087 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1206 331 299 182 45 chr6 81520950 81521134 -67995903 - RMER15 LTR ERVL -86 489 279 4 1206 966 18 0 0 chr6 81521290 81521402 -67995635 + (GGGAGA)n Simple_repeat Simple_repeat 3 114 0 5 1206 2080 168 17 90 chr6 81521772 81522184 -67994853 - ORR1C2 LTR MaLR -2 382 1 5 1206 1227 280 3 9 chr6 81522724 81523056 -67993981 + MER95 LTR ERV 1 330 -101 5 1206 708 141 0 0 chr6 81523061 81523196 -67993841 + (TG)n Simple_repeat Simple_repeat 1 135 0 5 1206 482 317 12 6 chr6 81523229 81523394 -67993643 + (TG)n Simple_repeat Simple_repeat 1 166 0 5 1206 820 301 34 54 chr6 81523422 81523450 -67993587 - B4A SINE B4 0 292 269 5 1206 522 91 0 0 chr6 81523450 81523527 -67993510 + (TATG)n Simple_repeat Simple_repeat 4 80 0 5 1206 820 301 34 54 chr6 81523527 81523796 -67993241 - B4A SINE B4 -24 268 1 5 1206 2556 128 33 0 chr6 81523962 81524392 -67992645 + RLTR11B LTR ERVK 10 453 0 5 1206 1610 78 13 36 chr6 81525209 81525434 -67991603 - L1_Mus1 LINE L1 -1 6566 6347 5 1206 243 0 0 0 chr6 81525442 81525469 -67991568 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 5 1206 549 331 49 5 chr6 81525672 81525857 -67991180 + ID_B1 SINE B4 24 216 -8 6 1206 21 36 0 0 chr6 81525865 81525893 -67991144 + AT_rich Low_complexity Low_complexity 1 28 0 6 1206 23 0 0 0 chr6 81526208 81526231 -67990806 + AT_rich Low_complexity Low_complexity 1 23 0 6 1206 22 0 0 0 chr6 81526762 81526784 -67990253 + AT_rich Low_complexity Low_complexity 1 22 0 6 1207 869 158 38 0 chr6 81526800 81526933 -67990104 - B1_Mus1 SINE Alu -10 138 1 6 1207 758 243 87 22 chr6 81526935 81527120 -67989917 - B3A SINE B2 0 198 2 6 1207 339 119 0 0 chr6 81527793 81527860 -67989177 + (T)n Simple_repeat Simple_repeat 1 67 0 6 1207 1259 75 0 0 chr6 81527871 81528018 -67989019 - B1_Mm SINE Alu 0 147 1 6 1207 228 275 31 52 chr6 81528019 81528115 -67988922 + LTR37A LTR ERV1 252 345 -81 6 1207 1049 162 0 59 chr6 81528113 81528316 -67988721 + MTB_Mm LTR MaLR 5 195 -212 6 1207 3861 78 27 0 chr6 81528316 81528838 -67988199 - L1Md_F2 LINE L1 -1273 4610 4075 7 1207 7245 71 0 17 chr6 81528840 81529786 -67987251 + L1Md_F2 LINE L1 4657 5586 -297 7 1207 7871 73 9 16 chr6 81529786 81530776 -67986261 + L1Md_F2 LINE L1 5587 6569 -13 7 1207 846 278 22 27 chr6 81530803 81531025 -67986012 - B4A SINE B4 -71 221 1 7 1207 1544 254 117 26 chr6 81532228 81532989 -67984048 + L1MA8 LINE L1 5210 6037 -254 7 1207 545 307 136 66 chr6 81532993 81533251 -67983786 + B4 SINE B4 1 276 -16 7 1207 462 18 0 0 chr6 81533285 81533340 -67983697 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1207 421 312 56 30 chr6 81533533 81533764 -67983273 + MLT1C LTR MaLR 206 442 -25 7 1207 744 270 20 45 chr6 81534309 81534507 -67982530 - B3A SINE B2 -2 196 4 7 1207 638 337 109 19 chr6 81534544 81534810 -67982227 + B4A SINE B4 3 292 0 7 1207 644 306 6 6 chr6 81534947 81535108 -67981929 + RSINE1 SINE B4 1 161 -4 7 1207 1160 154 111 29 chr6 81535380 81535587 -67981450 - URR1A DNA MER1_type -2 224 1 7 1207 906 175 73 58 chr6 81536178 81536384 -67980653 + B3 SINE B2 2 210 -6 8 1207 461 263 78 9 chr6 81536623 81536738 -67980299 + RSINE1 SINE B4 8 130 -35 8 1207 360 0 0 0 chr6 81536744 81536784 -67980253 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1207 218 369 92 8 chr6 81536806 81536937 -67980100 - MIR SINE MIR -106 156 15 8 1207 266 105 0 0 chr6 81537532 81537570 -67979467 + B2_Mm2 SINE B2 2 39 -156 8 1207 899 83 53 8 chr6 81537625 81537758 -67979279 + B2_Mm1t SINE B2 44 182 -11 8 1207 648 0 0 0 chr6 81537758 81537830 -67979207 + (GAGAA)n Simple_repeat Simple_repeat 4 75 0 8 1207 308 315 0 90 chr6 81538052 81538174 -67978863 + RSINE1 SINE B4 3 113 -52 8 1207 309 89 0 0 chr6 81538206 81538251 -67978786 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 8 1207 21 0 0 0 chr6 81538526 81538547 -67978490 + AT_rich Low_complexity Low_complexity 1 21 0 8 1207 22 0 0 0 chr6 81538666 81538688 -67978349 + AT_rich Low_complexity Low_complexity 1 22 0 9 1207 1023 16 0 0 chr6 81538718 81538839 -67978198 + (TG)n Simple_repeat Simple_repeat 2 122 0 9 1207 1068 301 78 12 chr6 81538839 81539172 -67977865 + ORR1E LTR MaLR 4 358 -1 9 1207 489 158 0 0 chr6 81540277 81540359 -67976678 + ORR1D2 LTR MaLR 283 364 -6 9 1207 370 372 36 44 chr6 81540748 81540973 -67976064 - MIRb SINE MIR -42 226 4 9 1207 3325 51 10 2 chr6 81540973 81541366 -67975671 + MTA_Mm LTR MaLR 1 396 0 9 1207 1016 226 19 19 chr6 81541495 81541711 -67975326 + B3 SINE B2 1 216 0 9 1207 826 320 72 107 chr6 81541722 81542124 -67974913 + MLT1F2 LTR MaLR 164 551 -9 9 1207 710 237 15 0 chr6 81542495 81542630 -67974407 + ID_B1 SINE B4 81 217 -7 9 1207 186 71 0 0 chr6 81544084 81544112 -67972925 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1207 868 240 9 60 chr6 81544381 81544598 -67972439 - ID_B1 SINE B4 -13 211 6 1 1207 712 259 18 36 chr6 81544823 81544991 -67972046 + B3A SINE B2 1 165 -33 1 1207 431 78 16 0 chr6 81544991 81545055 -67971982 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1207 188 242 0 10 chr6 81545664 81545720 -67971317 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1207 225 83 0 0 chr6 81545720 81545756 -67971281 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 1 1207 188 242 0 10 chr6 81545756 81545795 -67971242 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1207 407 278 93 38 chr6 81546223 81546459 -67970578 + MamRep1161 DNA TcMar 11 259 -698 1 1207 474 101 0 0 chr6 81546462 81546531 -67970506 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1207 430 294 9 9 chr6 81546544 81546654 -67970383 + PB1D10 SINE Alu 1 110 -7 1 1207 600 272 37 19 chr6 81547448 81547609 -67969428 + RSINE1 SINE B4 2 165 0 1 1207 328 325 150 34 chr6 81547711 81547918 -67969119 + LTR80B LTR ERVL 353 583 -1 1 1207 332 229 215 59 chr6 81548263 81548449 -67968588 + RLTR42-int LTR ERVK 1157 1371 -4151 1 1207 3328 87 25 7 chr6 81548739 81549179 -67967858 - L1Md_F2 LINE L1 0 6582 6135 1 1207 4780 41 0 0 chr6 81549180 81549740 -67967297 + L1Md_F2 LINE L1 5595 6154 -428 1 1207 206 276 0 0 chr6 81549764 81549822 -67967215 + (TCTG)n Simple_repeat Simple_repeat 3 60 0 1 1207 435 297 119 90 chr6 81549964 81550232 -67966805 - MLT1D LTR MaLR -1 504 227 1 1207 230 359 70 0 chr6 81550232 81550360 -67966677 - B1F1 SINE Alu -12 137 1 1 1207 435 297 119 90 chr6 81550360 81550579 -67966458 - MLT1D LTR MaLR -279 226 3 1 1207 855 253 131 5 chr6 81550681 81550872 -67966165 - B3 SINE B2 -1 215 1 1 1207 242 233 216 0 chr6 81551547 81551663 -67965374 - L1M5 LINE L1 -492 5672 5532 1 1207 585 140 10 0 chr6 81551815 81551915 -67965122 + L1VL1 LINE L1 1 101 -6321 1 1207 5187 52 0 0 chr6 81551912 81552545 -67964492 + L1Md_F2 LINE L1 4954 5586 -297 1 1207 8747 39 4 3 chr6 81552545 81553539 -67963498 + L1Md_F2 LINE L1 5587 6581 -1 1 1207 3678 185 25 16 chr6 81553539 81553661 -67963376 + L1MA6 LINE L1 5581 5752 -548 1 1207 351 65 0 0 chr6 81553661 81553707 -67963330 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 1 1207 1861 248 96 13 chr6 81553707 81553824 -67963213 + L1MA6 LINE L1 5753 5905 -395 1 1207 309 297 54 61 chr6 81554039 81554186 -67962851 - MER45A DNA Tip100 -29 149 4 1 1207 1811 259 62 23 chr6 81554558 81555088 -67961949 - Lx8 LINE L1 -3 7470 6920 1 1207 387 0 0 0 chr6 81555417 81555460 -67961577 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1207 261 0 0 0 chr6 81555460 81555488 -67961549 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1207 740 258 58 62 chr6 81555488 81555728 -67961309 + B4A SINE B4 17 255 -37 1 1207 1663 215 136 72 chr6 81555825 81556327 -67960710 + RMER15 LTR ERVL 37 570 -5 1 1207 236 270 0 31 chr6 81556351 81556416 -67960621 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 1 1207 297 221 71 40 chr6 81557302 81557401 -67959636 - MTEa LTR MaLR 0 379 278 1 1207 257 277 85 0 chr6 81557443 81557537 -67959500 - L1MD LINE L1 -3374 2772 2671 1 1207 216 246 35 0 chr6 81557561 81557618 -67959419 + RSINE1 SINE B4 29 87 -78 1 1207 409 247 0 0 chr6 81559572 81559657 -67957380 + MER58A DNA MER1_type 50 134 -90 1 1207 1056 220 9 40 chr6 81560047 81560270 -67956767 + B3 SINE B2 1 216 0 1 1207 1218 299 57 0 chr6 81561066 81561417 -67955620 - MTEb LTR MaLR -8 371 1 1 1207 573 248 216 10 chr6 81561952 81562248 -67954789 + Lx8 LINE L1 6805 7161 -312 1 1207 509 265 103 35 chr6 81562282 81562485 -67954552 + Lx8 LINE L1 7252 7468 -5 1 1207 2020 168 37 15 chr6 81562512 81562916 -67954121 - Lx5 LINE L1 -797 6253 5841 1 1207 2248 172 64 0 chr6 81562918 81563291 -67953746 + Lx5 LINE L1 6651 7047 -3 1 1207 730 351 62 4 chr6 81564025 81564268 -67952769 + B4A SINE B4 13 269 -23 1 1207 279 0 0 0 chr6 81564268 81564299 -67952738 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1207 21 0 0 0 chr6 81566172 81566193 -67950844 + AT_rich Low_complexity Low_complexity 1 21 0 1 1207 519 281 91 6 chr6 81566252 81566417 -67950620 + B3A SINE B2 2 180 -18 1 1207 549 80 0 0 chr6 81566436 81566511 -67950526 + (TAAA)n Simple_repeat Simple_repeat 4 78 0 1 1207 1037 246 5 5 chr6 81566781 81566989 -67950048 - B3 SINE B2 -6 210 3 1 1207 397 265 65 124 chr6 81568254 81568439 -67948598 + B4 SINE B4 5 178 -114 1 1207 261 278 122 0 chr6 81568359 81568449 -67948588 + PB1D9 SINE Alu 13 113 -7 1 1207 7528 76 12 4 chr6 81568453 81569820 -67947217 + L1_Mus2 LINE L1 5186 6566 0 1 1207 293 278 0 65 chr6 81569845 81569922 -67947115 + B4 SINE B4 221 292 0 1 1207 2437 170 127 10 chr6 81569942 81570446 -67946591 + RMER4B LTR ERVK 15 577 -8 1 1207 281 280 0 0 chr6 81570911 81570986 -67946051 + Charlie8 DNA MER1_type 930 1004 -1424 1 1207 460 232 10 10 chr6 81571307 81571403 -67945634 + B3A SINE B2 1 96 -102 1 1207 644 0 13 0 chr6 81571839 81571915 -67945122 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1207 373 319 72 22 chr6 81571938 81572076 -67944961 - B4A SINE B4 -21 271 127 1 1207 281 328 0 0 chr6 81572104 81572171 -67944866 - B4A SINE B4 -218 74 8 1 1207 240 163 0 0 chr6 81572390 81572433 -67944604 + GA-rich Low_complexity Low_complexity 1 43 0 1 1207 410 292 52 1 chr6 81572533 81572688 -67944349 + L1MC1 LINE L1 6177 6342 -2 1 1207 562 349 25 30 chr6 81573380 81573581 -67943456 - ID_B1 SINE B4 -23 201 2 1 1207 360 312 18 9 chr6 81573591 81573701 -67943336 + Cheshire DNA MER1_type 166 276 -2144 1 1207 345 283 50 10 chr6 81573965 81574065 -67942972 + Lx8 LINE L1 6857 6960 -513 1 1207 1383 244 119 42 chr6 81574065 81574450 -67942587 - MTD LTR MaLR 0 419 5 1 1207 492 240 16 8 chr6 81574481 81574603 -67942434 + Lx8 LINE L1 6999 7121 -352 1 1207 543 16 0 0 chr6 81574826 81574890 -67942147 + (TTTTG)n Simple_repeat Simple_repeat 3 66 0 1 1207 276 250 69 35 chr6 81575145 81575232 -67941805 - LFSINE_Vert SINE SINE -124 335 246 1 1207 548 53 13 0 chr6 81576163 81576239 -67940798 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 1 1207 281 325 24 0 chr6 81576985 81577068 -67939969 - MER77 LTR ERVL -7 600 516 1 1207 450 0 0 0 chr6 81577314 81577364 -67939673 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1207 255 294 45 45 chr6 81577375 81577464 -67939573 - MER77 LTR ERVL -133 474 386 1 1207 725 285 12 0 chr6 81577660 81577832 -67939205 - B4A SINE B4 -6 286 113 1 1207 189 325 103 26 chr6 81578240 81578357 -67938680 - MIRm SINE MIR -26 250 125 1 1207 874 225 0 0 chr6 81578789 81578949 -67938088 + B3A SINE B2 1 160 -38 1 1207 471 18 0 0 chr6 81578956 81579012 -67938025 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1207 267 79 0 0 chr6 81579012 81579050 -67937987 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1207 749 299 23 9 chr6 81579168 81579384 -67937653 + ID_B1 SINE B4 6 224 0 1 1207 414 272 74 81 chr6 81580032 81580180 -67936857 + B4A SINE B4 146 292 0 1 1207 341 199 24 8 chr6 81580220 81580347 -67936690 + GA-rich Low_complexity Low_complexity 2 130 0 1 1207 464 239 77 102 chr6 81580502 81580698 -67936339 + B4A SINE B4 102 292 0 1 1207 549 68 0 0 chr6 81581002 81581076 -67935961 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1207 752 281 10 29 chr6 81581113 81581318 -67935719 - B4A SINE B4 -66 226 26 1 1207 497 340 42 66 chr6 81581352 81581519 -67935518 + RSINE1 SINE B4 3 165 0 1 1207 201 175 0 0 chr6 81581523 81581563 -67935474 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1207 576 0 0 0 chr6 81582043 81582107 -67934930 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1207 742 311 54 11 chr6 81582125 81582385 -67934652 - B4A SINE B4 -19 273 3 1 1207 25 51 0 0 chr6 81582518 81582557 -67934480 + AT_rich Low_complexity Low_complexity 1 39 0 1 1207 275 265 38 120 chr6 81583726 81583859 -67933178 - L2a LINE L2 0 3426 3266 1 1207 229 226 15 61 chr6 81584537 81584603 -67932434 - B3 SINE B2 -132 63 1 1 1207 3690 66 2 0 chr6 81584818 81585257 -67931780 - L1_Mus2 LINE L1 0 6566 6127 1 1207 324 70 0 0 chr6 81585385 81585428 -67931609 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1 1207 377 86 17 0 chr6 81586129 81586187 -67930850 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1207 231 329 43 0 chr6 81586198 81586268 -67930769 - RSINE1 SINE B4 -11 154 82 1 1207 1240 249 125 16 chr6 81586340 81586716 -67930321 + MTD LTR MaLR 1 417 -2 1 1207 327 301 105 46 chr6 81586723 81586873 -67930164 - B4A SINE B4 -76 148 1 1 1207 218 140 0 34 chr6 81586902 81586961 -67930076 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 1 1207 431 35 18 0 chr6 81586986 81587043 -67929994 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1207 468 0 0 0 chr6 81587512 81587564 -67929473 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1207 1038 296 11 11 chr6 81587584 81587871 -67929166 + B4A SINE B4 2 288 -4 1 1207 518 86 12 0 chr6 81587923 81588004 -67929033 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 1 1207 237 94 0 0 chr6 81588272 81588304 -67928733 + Lx3C LINE L1 5331 5362 -515 1 1207 1295 69 31 0 chr6 81588304 81588464 -67928573 + U1 snRNA snRNA 1 165 0 1 1207 4261 144 13 53 chr6 81588479 81589069 -67927968 + Lx3C LINE L1 5348 5910 -1066 1 1207 186 43 0 0 chr6 81589069 81589092 -67927945 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1207 4261 161 24 16 chr6 81589092 81589512 -67927525 + Lx3C LINE L1 5911 6344 -632 1 1207 1703 191 83 16 chr6 81589514 81589887 -67927150 + Lx3C LINE L1 6577 6974 -2 1 1207 1292 311 99 9 chr6 81590288 81590846 -67926191 + Lx8 LINE L1 6777 7384 -89 1 1207 3046 42 0 33 chr6 81590890 81591258 -67925779 + L1Md_F3 LINE L1 6228 6583 -1 1 1207 418 183 12 24 chr6 81592269 81592353 -67924684 + Lx6 LINE L1 6749 6831 -629 1 1207 3599 122 185 9 chr6 81592353 81592996 -67924041 + RMER6A LTR ERVK 1 756 0 1 1207 744 209 19 19 chr6 81592996 81593157 -67923880 + Lx7 LINE L1 6836 6996 -700 1 1207 679 163 169 7 chr6 81593161 81593315 -67923722 + ORR1D1 LTR MaLR 196 374 0 2 1207 557 294 19 7 chr6 81593322 81593476 -67923561 + MTE2b LTR MaLR 222 377 -2 2 1207 4078 215 16 59 chr6 81594073 81595275 -67921762 + RMER1A Other Other 22 1056 -10 2 1207 1413 241 59 45 chr6 81595534 81595908 -67921129 - MTEa LTR MaLR 0 379 1 2 1207 259 239 30 0 chr6 81596234 81596301 -67920736 + CT-rich Low_complexity Low_complexity 3 71 0 2 1207 819 113 7 89 chr6 81596302 81596448 -67920589 - B1_Mur1 SINE Alu -7 142 9 2 1207 251 262 49 12 chr6 81596465 81596546 -67920491 + MLT1H1 LTR MaLR 65 148 -407 2 1207 531 45 0 0 chr6 81596572 81596638 -67920399 + (CTA)n Simple_repeat Simple_repeat 2 67 0 2 1207 255 330 32 63 chr6 81596638 81596764 -67920273 - RSINE1 SINE B4 -19 146 25 2 1207 395 119 15 0 chr6 81597070 81597137 -67919900 + (TCC)n Simple_repeat Simple_repeat 3 70 0 2 1207 471 18 0 0 chr6 81597137 81597193 -67919844 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1207 396 357 7 7 chr6 81597198 81597339 -67919698 + MLT1G3 LTR MaLR 455 595 0 2 1207 732 301 68 68 chr6 81598064 81598417 -67918620 + ORR1E LTR MaLR 3 355 -4 2 1207 533 337 60 16 chr6 81598723 81598973 -67918064 - MER44B DNA MER2_type -248 302 42 2 1207 214 149 0 41 chr6 81599161 81599210 -67917827 + T-rich Low_complexity Low_complexity 5 51 0 2 1207 883 351 79 57 chr6 81599495 81600129 -67916908 - MTE-int LTR MaLR -20 1560 913 2 1207 403 279 71 9 chr6 81601602 81601714 -67915323 + RSINE1 SINE B4 3 121 -44 2 1207 315 185 61 12 chr6 81602473 81602555 -67914482 - MTE2a LTR MaLR -291 88 3 2 1207 681 158 41 7 chr6 81602836 81602983 -67914054 + RMER17B LTR ERVK 312 463 -495 2 1207 4046 55 0 8 chr6 81603130 81603609 -67913428 + L1Md_F2 LINE L1 6096 6570 -12 2 1207 499 179 0 45 chr6 81603726 81603837 -67913200 - MTC-int LTR MaLR -2 1256 1151 2 1207 2280 82 60 35 chr6 81603840 81603891 -67913146 - ORR1A2 LTR MaLR -2 325 285 2 1207 1671 32 0 26 chr6 81603891 81604083 -67912954 - B2_Mm1a SINE B2 -6 187 1 2 1207 2280 82 60 35 chr6 81604083 81604348 -67912689 - ORR1A2 LTR MaLR -43 284 1 2 1207 9937 151 83 23 chr6 81604348 81606200 -67910837 - ORR1A2-int LTR MaLR 0 1963 1 2 1207 2347 105 38 0 chr6 81606200 81606515 -67910522 - ORR1A2 LTR MaLR 0 327 1 2 1207 604 223 249 33 chr6 81607677 81607858 -67909179 + ID_B1 SINE B4 3 222 -2 2 1207 395 38 19 0 chr6 81607982 81608035 -67909002 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1207 558 0 0 0 chr6 81608039 81608101 -67908936 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 2 1207 26 0 0 0 chr6 81608110 81608136 -67908901 + AT_rich Low_complexity Low_complexity 1 26 0 2 1207 3573 149 50 22 chr6 81608392 81608977 -67908060 - Lx2B LINE L1 -5 6995 6395 2 1207 573 220 219 28 chr6 81609208 81609386 -67907651 - B3 SINE B2 0 216 5 2 1207 697 259 82 6 chr6 81609402 81609573 -67907464 - B3A SINE B2 -14 184 1 2 1207 258 32 0 0 chr6 81609640 81609671 -67907366 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 2 1207 261 0 0 0 chr6 81609756 81609785 -67907252 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1207 547 262 104 47 chr6 81609785 81609977 -67907060 - ID_B1 SINE B4 -18 206 4 2 1207 669 316 102 40 chr6 81612428 81612900 -67904137 + L1MC3 LINE L1 6907 7407 -378 2 1207 262 276 69 0 chr6 81612951 81613009 -67904028 + RSINE1 SINE B4 95 156 -9 2 1207 241 308 11 0 chr6 81614115 81614206 -67902831 + MLT1D LTR MaLR 410 501 -4 2 1207 852 129 50 17 chr6 81614350 81614650 -67902387 + (TAGA)n Simple_repeat Simple_repeat 1 309 0 2 1207 512 134 45 34 chr6 81614666 81614843 -67902194 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 2 1207 717 264 168 26 chr6 81615038 81615306 -67901731 + MTEa LTR MaLR 74 379 0 2 1207 1718 183 109 11 chr6 81615333 81615692 -67901345 + ORR1B1 LTR MaLR 1 394 0 2 1207 839 320 24 42 chr6 81615884 81616171 -67900866 + Lx8 LINE L1 7113 7394 -79 2 1207 252 0 0 0 chr6 81616520 81616548 -67900489 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1207 332 342 56 45 chr6 81616707 81617023 -67900014 - L1MC LINE L1 -1684 4462 4143 2 1207 882 236 42 47 chr6 81617180 81617393 -67899644 - B3 SINE B2 0 216 5 2 1207 444 327 10 0 chr6 81618087 81618191 -67898846 + RSINE1 SINE B4 61 165 0 2 1207 232 295 50 40 chr6 81618817 81618916 -67898121 + B4A SINE B4 5 104 -188 2 1207 1013 236 144 19 chr6 81618960 81619394 -67897643 + RMER20A LTR ERVK 5 512 -4 2 1207 314 295 170 0 chr6 81619511 81619623 -67897414 + B4A SINE B4 148 278 -14 2 1207 201 39 0 0 chr6 81619653 81619679 -67897358 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1207 1004 151 0 6 chr6 81619679 81619858 -67897179 + GA-rich Low_complexity Low_complexity 2 180 0 2 1207 204 40 0 0 chr6 81619858 81619883 -67897154 + (GGA)n Simple_repeat Simple_repeat 2 26 0 2 1207 1070 122 0 6 chr6 81619884 81620065 -67896972 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1207 2291 169 85 18 chr6 81620065 81620500 -67896537 - RMER1C Other Other -146 1196 733 2 1207 895 185 0 20 chr6 81620712 81620861 -67896176 - B1_Mus2 SINE Alu -1 146 1 2 1207 1137 128 0 0 chr6 81620987 81621167 -67895870 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1207 228 154 0 0 chr6 81621167 81621219 -67895818 + CT-rich Low_complexity Low_complexity 3 54 0 2 1207 424 314 107 10 chr6 81623276 81623472 -67893565 - HAL1 LINE L1 -772 1735 1521 2 1207 611 331 0 6 chr6 81624086 81624247 -67892790 - B3A SINE B2 -38 160 1 2 1207 698 294 21 26 chr6 81624916 81625108 -67891929 - B3A SINE B2 -6 192 2 2 1207 686 230 185 0 chr6 81625150 81625328 -67891709 - B3 SINE B2 -5 211 1 2 1207 513 47 0 0 chr6 81625557 81625621 -67891416 + (TC)n Simple_repeat Simple_repeat 2 65 0 2 1207 606 248 90 0 chr6 81626690 81626835 -67890202 + RSINE1 SINE B4 2 159 -6 2 1207 817 293 24 19 chr6 81626885 81627097 -67889940 + ID_B1 SINE B4 1 213 -11 2 1207 34 0 0 0 chr6 81627102 81627136 -67889901 + AT_rich Low_complexity Low_complexity 1 34 0 2 1207 429 309 86 6 chr6 81627653 81627816 -67889221 + B3A SINE B2 5 180 -18 2 1207 451 331 55 37 chr6 81628060 81628223 -67888814 + ID_B1 SINE B4 49 214 -10 2 1207 197 132 26 0 chr6 81628289 81628327 -67888710 + GA-rich Low_complexity Low_complexity 2 40 0 2 1207 416 275 28 38 chr6 81628333 81628439 -67888598 + RSINE1 SINE B4 52 156 -9 2 1207 297 183 0 0 chr6 81629117 81629177 -67887860 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1207 667 299 91 19 chr6 81629567 81629830 -67887207 + B4A SINE B4 3 284 -8 2 1207 1028 292 82 10 chr6 81630474 81630778 -67886259 - Lx8 LINE L1 -175 7298 6973 2 1207 1032 210 178 34 chr6 81630782 81631102 -67885935 - ORR1D1 LTR MaLR -8 366 1 2 1207 1075 74 11 0 chr6 81631475 81631651 -67885386 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 1207 328 300 174 15 chr6 81631751 81631883 -67885154 - B4A SINE B4 -137 155 3 2 1207 679 290 11 0 chr6 81632079 81632255 -67884782 + B3A SINE B2 3 180 -18 2 1207 26 30 0 0 chr6 81632275 81632308 -67884729 + AT_rich Low_complexity Low_complexity 1 33 0 2 1207 261 0 0 0 chr6 81632350 81632379 -67884658 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1207 1139 239 100 34 chr6 81633067 81633418 -67883619 + MTD LTR MaLR 46 419 0 2 1207 247 331 94 0 chr6 81633498 81633625 -67883412 - Lx8 LINE L1 -135 7338 7200 2 1207 198 0 0 0 chr6 81633634 81633656 -67883381 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2 1207 2469 35 0 0 chr6 81633656 81633942 -67883095 - L1Md_T LINE L1 -254 6328 6043 2 1207 2425 50 0 0 chr6 81633943 81634222 -67882815 + L1Md_T LINE L1 6304 6582 0 2 1207 442 316 35 20 chr6 81634732 81634935 -67882102 + L1MB7 LINE L1 759 964 -5940 2 1207 639 217 80 64 chr6 81635061 81635248 -67881789 + B3A SINE B2 3 192 -6 2 1207 341 275 147 38 chr6 81635259 81635497 -67881540 + L1MB7 LINE L1 1199 1462 -5442 2 1207 1578 158 137 13 chr6 81635520 81635901 -67881136 - RLTR28B LTR ERVL -32 449 22 2 1207 297 236 194 0 chr6 81635911 81635983 -67881054 + PB1D7 SINE Alu 18 103 -17 2 1207 224 154 19 0 chr6 81636004 81636056 -67880981 + GA-rich Low_complexity Low_complexity 2 54 0 2 1207 25 65 0 0 chr6 81636169 81636215 -67880822 + AT_rich Low_complexity Low_complexity 1 46 0 2 1207 494 287 93 11 chr6 81636215 81636493 -67880544 + L1MB7 LINE L1 1508 1808 -5526 2 1207 361 229 52 1 chr6 81637346 81637463 -67879574 + L1MB7 LINE L1 1895 2011 -4997 2 1207 330 251 22 187 chr6 81637539 81637902 -67879135 + L1MB7 LINE L1 5751 6053 -953 2 1207 245 246 0 0 chr6 81638049 81638110 -67878927 - URR1B DNA MER1_type -55 170 110 2 1207 244 263 0 16 chr6 81639109 81639200 -67877837 + L1MB7 LINE L1 6127 6213 -944 2 1207 634 272 102 25 chr6 81639212 81639588 -67877449 + L1MB7 LINE L1 6555 6960 -80 2 1207 428 282 136 0 chr6 81640004 81640114 -67876923 + ID_B1 SINE B4 80 204 -20 2 1207 1218 84 0 0 chr6 81640307 81640462 -67876575 + L1Md_F2 LINE L1 5432 5586 -297 2 1207 8281 62 5 5 chr6 81640462 81641458 -67875579 + L1Md_F2 LINE L1 5587 6582 0 2 1207 1167 62 136 35 chr6 81641722 81641921 -67875116 + L1_Mus4 LINE L1 6417 6635 -1 2 1207 550 325 41 12 chr6 81642359 81642530 -67874507 + B4A SINE B4 1 176 -116 2 1207 224 350 10 58 chr6 81642460 81642563 -67874474 + PB1D7 SINE Alu 18 115 -5 2 1207 749 61 17 0 chr6 81642616 81642731 -67874306 + (CAGAGA)n Simple_repeat Simple_repeat 2 118 0 2 1207 7930 65 6 4 chr6 81643192 81644215 -67872822 - L1Md_F2 LINE L1 0 6582 5587 2 1207 1355 300 82 33 chr6 81646262 81646595 -67870442 + Lx8 LINE L1 6622 6955 -518 2 1207 462 36 0 0 chr6 81646595 81646651 -67870386 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1207 1355 300 82 33 chr6 81646651 81646948 -67870089 + Lx8 LINE L1 6956 7282 -191 2 1207 344 109 465 2 chr6 81646950 81647051 -67869986 + ORR1D1 LTR MaLR 4 145 -229 2 1207 723 314 113 32 chr6 81647717 81648062 -67868975 - MLT1A LTR MaLR -1 373 1 2 1207 621 58 0 0 chr6 81648476 81648562 -67868475 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 1207 391 343 0 19 chr6 81649155 81649329 -67867708 - MLT1A-int LTR MaLR -1153 582 325 2 1207 412 296 75 26 chr6 81649335 81649580 -67867457 + Lx7 LINE L1 5609 5899 -398 2 1207 936 18 0 0 chr6 81649593 81649703 -67867334 + (TG)n Simple_repeat Simple_repeat 2 111 0 2 1207 360 328 72 6 chr6 81649755 81649936 -67867101 + L1MD2 LINE L1 5677 5869 -490 3 1207 1182 294 48 5 chr6 81650010 81650383 -67866654 + Lx8 LINE L1 7082 7470 -3 3 1207 634 284 22 31 chr6 81651595 81651824 -67865213 + RMER15 LTR ERVL 336 562 -13 3 1207 1227 57 7 11 chr6 81652757 81653045 -67863992 + (TG)n Simple_repeat Simple_repeat 1 286 0 3 1207 231 294 125 16 chr6 81653752 81653880 -67863157 - L1MD3 LINE L1 -84 7911 7770 3 1207 2044 141 66 32 chr6 81654831 81655271 -67861766 - RLTR31_Mm LTR ERVK -106 455 1 3 1207 791 250 26 56 chr6 81655294 81655489 -67861548 - B3A SINE B2 -4 194 6 3 1207 3238 165 55 9 chr6 81655652 81656202 -67860835 + RMER15 LTR ERVL 1 575 0 3 1207 2332 263 67 11 chr6 81656369 81657037 -67860000 + MER67C LTR ERV1 6 711 0 3 1207 471 212 151 14 chr6 81657310 81657364 -67859673 - MTE2b LTR MaLR -2 377 319 3 1207 951 252 144 56 chr6 81657364 81657704 -67859333 - ORR1D2 LTR MaLR 0 370 1 3 1207 471 212 151 14 chr6 81657704 81657788 -67859249 - MTE2b LTR MaLR -61 318 220 3 150 2061 216 22 7 chr6 81657794 81658204 -67858833 - MTC LTR MaLR -5 416 1 3 1208 947 239 20 10 chr6 81658204 81658405 -67858632 - MTE2b LTR MaLR -158 221 19 3 1208 1523 236 57 23 chr6 81658830 81659217 -67857820 - MTD LTR MaLR -14 405 6 3 1208 25 0 0 0 chr6 81659588 81659613 -67857424 + AT_rich Low_complexity Low_complexity 1 25 0 3 1208 451 314 121 0 chr6 81659621 81659761 -67857276 - B4A SINE B4 -6 286 130 3 1208 628 238 7 37 chr6 81660190 81660325 -67856712 - B4A SINE B4 -160 132 2 3 1208 301 344 75 20 chr6 81660988 81661243 -67855794 - L1M6 LINE L1 -4614 1882 1614 3 1208 540 0 0 0 chr6 81662409 81662469 -67854568 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1208 627 296 80 63 chr6 81662470 81662501 -67854536 - MT2B LTR ERVL -48 485 454 3 1208 581 14 0 27 chr6 81662501 81662576 -67854461 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 3 1208 1027 248 24 123 chr6 81662576 81662959 -67854078 - MT2B LTR ERVL -70 531 64 3 1208 2364 239 11 33 chr6 81662963 81663509 -67853528 - RLTR20C LTR ERVK 0 534 1 3 1208 263 164 146 0 chr6 81663509 81663564 -67853473 - MT2B LTR ERVL -534 67 5 3 1208 389 278 165 9 chr6 81663724 81663957 -67853080 + RMER15 LTR ERVL 262 560 -15 3 1208 1009 280 41 65 chr6 81664550 81664844 -67852193 + B4 SINE B4 6 292 0 3 1208 306 167 0 0 chr6 81664850 81664910 -67852127 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1208 210 343 48 48 chr6 81665430 81665534 -67851503 + MIR SINE MIR 27 130 -78 3 1208 1337 245 79 8 chr6 81667077 81667431 -67849606 - MTEa LTR MaLR 0 379 1 3 1208 516 32 0 0 chr6 81669891 81669953 -67847084 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1208 358 227 45 0 chr6 81669955 81670043 -67846994 - MLT1A LTR MaLR -209 165 74 3 1208 530 293 120 0 chr6 81670411 81670602 -67846435 + ID_B1 SINE B4 2 215 -9 3 1208 771 288 30 0 chr6 81671701 81671899 -67845138 + B3 SINE B2 4 207 -9 3 1208 23 0 0 0 chr6 81671901 81671924 -67845113 + AT_rich Low_complexity Low_complexity 1 23 0 3 1208 1372 203 73 17 chr6 81672089 81672389 -67844648 + ORR1B1 LTR MaLR 1 317 -77 3 1208 318 29 0 0 chr6 81672389 81672424 -67844613 + L1Md_A LINE L1 5552 5586 -297 3 1208 8587 34 0 0 chr6 81672424 81673419 -67843618 + L1Md_A LINE L1 5587 6581 -1 3 1208 629 127 0 68 chr6 81673435 81673553 -67843484 + ORR1B2 LTR MaLR 258 367 0 3 1208 535 285 33 22 chr6 81673776 81673959 -67843078 - B4A SINE B4 -2 290 106 3 1208 318 258 0 73 chr6 81674112 81674208 -67842829 - B4 SINE B4 -199 93 5 3 1208 377 309 80 53 chr6 81674502 81674803 -67842234 + Tigger15a DNA TcMar 163 471 -244 3 1208 685 255 61 19 chr6 81675270 81675482 -67841555 + MTEa LTR MaLR 93 313 -66 3 1208 22 0 0 0 chr6 81675497 81675519 -67841518 + AT_rich Low_complexity Low_complexity 1 22 0 3 1208 373 130 14 0 chr6 81675552 81675621 -67841416 + MTEa LTR MaLR 305 374 -5 3 1208 273 146 0 0 chr6 81675674 81675715 -67841322 - ID4 SINE ID -28 55 15 3 1208 601 112 0 20 chr6 81676338 81676438 -67840599 - ORR1B2 LTR MaLR 0 367 270 3 1208 668 240 55 33 chr6 81676744 81676925 -67840112 + B4 SINE B4 104 288 -4 3 1208 261 0 0 0 chr6 81676928 81676957 -67840080 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1208 594 344 90 17 chr6 81677172 81677648 -67839389 + Charlie7 DNA MER1_type 202 712 -1900 3 1208 673 340 67 15 chr6 81677802 81678133 -67838904 + Tigger7 DNA MER2_type 7 354 -2137 3 1208 1000 0 17 0 chr6 81678949 81679069 -67837968 + (CA)n Simple_repeat Simple_repeat 2 123 0 3 1208 831 129 8 171 chr6 81679270 81679504 -67837533 + RLTR28 LTR ERVL 329 524 0 3 1208 303 333 20 0 chr6 81679514 81679613 -67837424 - B4 SINE B4 -191 101 1 3 1208 215 343 19 0 chr6 81679717 81679822 -67837215 - MIR SINE MIR -21 241 135 3 1208 620 303 50 22 chr6 81680060 81680239 -67836798 - B4 SINE B4 -2 290 107 3 1208 814 175 58 27 chr6 81681822 81682010 -67835027 + Lx LINE L1 6460 6653 -1 3 1208 375 278 11 0 chr6 81682029 81682119 -67834918 + B3 SINE B2 70 160 -56 3 1208 210 118 0 0 chr6 81682135 81682169 -67834868 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1208 1014 205 154 34 chr6 81682221 81682572 -67834465 + RMER16 LTR ERVK 4 532 -1 3 1208 25 0 0 0 chr6 81682580 81682605 -67834432 + AT_rich Low_complexity Low_complexity 1 25 0 3 1208 392 336 7 62 chr6 81682693 81682839 -67834198 + B4 SINE B4 101 238 -54 3 1208 442 228 153 8 chr6 81682893 81683017 -67834020 + B4 SINE B4 137 278 -14 3 1208 953 270 5 9 chr6 81684331 81684555 -67832482 + B4 SINE B4 6 228 -64 3 1208 1024 302 152 49 chr6 81684701 81685985 -67831052 + L1M2 LINE L1 1639 3104 -3445 3 1208 741 272 68 13 chr6 81685979 81686214 -67830823 + Lx8 LINE L1 6789 7036 -437 3 1208 306 0 0 0 chr6 81686378 81686412 -67830625 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1208 1032 156 77 43 chr6 81686688 81686896 -67830141 + B3 SINE B2 2 216 0 3 1208 523 226 153 29 chr6 81687319 81687456 -67829581 + RSINE1 SINE B4 2 155 -10 3 1208 339 335 25 37 chr6 81688071 81688232 -67828805 - MLT1D LTR MaLR -327 178 20 3 1208 275 346 127 22 chr6 81688277 81688599 -67828438 + ERVL-E-int LTR ERVL 3090 3445 -2222 3 1208 373 324 55 6 chr6 81688610 81688830 -67828207 + ERVL-E-int LTR ERVL 3481 3785 -1700 3 1208 231 296 133 22 chr6 81689068 81689203 -67827834 - RMER15 LTR ERVL 0 575 426 3 1208 1429 62 0 0 chr6 81689236 81689415 -67827622 + L1_Mus1 LINE L1 6389 6567 0 3 1208 242 323 31 20 chr6 81689501 81689599 -67827438 - Lx8 LINE L1 -338 7135 7037 3 1208 239 0 32 0 chr6 81690045 81690076 -67826961 + (CATA)n Simple_repeat Simple_repeat 2 33 0 3 1208 266 231 16 188 chr6 81690101 81690229 -67826808 + MTD LTR MaLR 1 106 -313 3 1208 292 326 28 35 chr6 81690782 81690925 -67826112 + B4A SINE B4 1 142 -150 3 1208 632 208 76 8 chr6 81690999 81691130 -67825907 + B1_Mur1 SINE Alu 5 144 -5 3 1208 795 300 39 21 chr6 81691450 81691462 -67825575 - B4 SINE B4 -8 284 273 3 1208 282 56 0 0 chr6 81691462 81691498 -67825539 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1208 795 300 39 21 chr6 81691498 81691764 -67825273 - B4 SINE B4 -20 272 2 3 1208 247 151 52 86 chr6 81692430 81692488 -67824549 - Lx8 LINE L1 -133 7340 7285 3 1208 366 373 53 28 chr6 81692488 81692882 -67824155 - Tigger6a DNA MER2_type -392 691 288 3 1208 244 250 16 129 chr6 81693197 81693321 -67823716 + RMER1C Other Other 1215 1324 -18 3 1208 383 296 26 104 chr6 81693604 81693796 -67823241 + B3A SINE B2 7 183 -15 3 1208 333 68 0 0 chr6 81693803 81693847 -67823190 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1208 375 276 10 0 chr6 81695404 81695502 -67821535 + RSINE1 SINE B4 26 124 -41 3 1208 369 0 0 0 chr6 81695502 81695543 -67821494 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1208 181 40 57 57 chr6 81695613 81695666 -67821371 + (TTATA)n Simple_repeat Simple_repeat 1 53 0 3 1208 210 71 0 0 chr6 81695764 81695792 -67821245 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1208 1031 231 94 17 chr6 81695958 81696245 -67820792 + MTD LTR MaLR 3 311 -108 3 1208 318 180 0 0 chr6 81696254 81696315 -67820722 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 3 1208 529 100 11 11 chr6 81696565 81696656 -67820381 + (GA)n Simple_repeat Simple_repeat 1 91 0 3 1208 1194 247 110 21 chr6 81696880 81697252 -67819785 + MTD LTR MaLR 1 405 -14 3 1208 814 254 97 23 chr6 81697260 81697602 -67819435 + L1M4 LINE L1 4998 5364 -782 3 1208 659 205 58 20 chr6 81697631 81697791 -67819246 + B3A SINE B2 17 165 -30 3 1208 324 0 0 0 chr6 81697791 81697827 -67819210 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1208 265 229 65 156 chr6 81697827 81697852 -67819185 + B2_Mm2 SINE B2 166 185 -10 3 1208 1186 261 91 18 chr6 81697883 81698269 -67818768 + Lx7 LINE L1 6855 7268 -428 3 1208 343 338 59 38 chr6 81698263 81698500 -67818537 + L1M4 LINE L1 5540 5781 -397 3 1208 603 27 0 0 chr6 81698798 81698871 -67818166 + (TC)n Simple_repeat Simple_repeat 1 73 0 3 1208 348 24 0 0 chr6 81698889 81698930 -67818107 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1208 450 247 519 11 chr6 81698940 81699121 -67817916 - B4 SINE B4 -18 274 2 3 1208 249 131 49 0 chr6 81699584 81699645 -67817392 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1208 339 193 0 0 chr6 81699663 81699746 -67817291 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 1208 494 189 35 26 chr6 81700368 81700482 -67816555 - BC1_Mm scRNA scRNA -37 115 1 3 1208 193 312 175 0 chr6 81700486 81700566 -67816471 + L2a LINE L2 3289 3382 -44 3 1208 1003 291 34 59 chr6 81700881 81701239 -67815798 + ORR1E LTR MaLR 11 359 0 3 1208 249 234 0 0 chr6 81702190 81702237 -67814800 + ID_B1 SINE B4 135 181 -43 3 1208 197 224 0 17 chr6 81702272 81702331 -67814706 + GA-rich Low_complexity Low_complexity 4 61 0 3 1208 180 0 0 0 chr6 81702825 81702845 -67814192 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1208 1736 251 64 9 chr6 81703298 81703752 -67813285 - Lx8 LINE L1 -2 7471 6993 4 1208 731 283 55 70 chr6 81704339 81704463 -67812574 + B4A SINE B4 2 114 -178 4 1208 1852 212 58 13 chr6 81704463 81704860 -67812177 - MTD LTR MaLR -3 416 2 4 1208 731 283 55 70 chr6 81704860 81705008 -67812029 + B4A SINE B4 115 270 -22 4 1208 1901 184 24 14 chr6 81705124 81705494 -67811543 - ORR1D1 LTR MaLR 0 374 1 4 1208 288 0 0 0 chr6 81705714 81705746 -67811291 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1208 180 158 0 0 chr6 81705979 81706017 -67811020 + C-rich Low_complexity Low_complexity 1 38 0 4 1208 265 313 15 37 chr6 81706616 81706752 -67810285 - MER45A DNA Tip100 -16 162 30 4 1208 327 288 118 6 chr6 81707026 81707187 -67809850 - ORR1E LTR MaLR -171 188 10 4 1208 616 197 61 68 chr6 81707577 81707740 -67809297 + RSINE1 SINE B4 3 164 -1 4 1208 203 250 50 0 chr6 81707921 81707981 -67809056 + GA-rich Low_complexity Low_complexity 2 64 0 4 1208 450 0 0 0 chr6 81708171 81708221 -67808816 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1208 1054 92 43 0 chr6 81708379 81708520 -67808517 + B1_Mus1 SINE Alu 2 148 0 4 1208 645 49 0 0 chr6 81708594 81708675 -67808362 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 1208 758 247 0 0 chr6 81708820 81708970 -67808067 - RSINE1 SINE B4 -15 150 1 4 1208 203 389 9 9 chr6 81708981 81709095 -67807942 + MER5B DNA MER1_type 53 166 -12 4 1208 450 0 0 0 chr6 81709834 81709884 -67807153 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1208 292 324 56 21 chr6 81709983 81710125 -67806912 - RSINE1 SINE B4 -145 147 1 4 1208 514 246 8 54 chr6 81710836 81710965 -67806072 + RSINE1 SINE B4 2 124 -41 4 1208 315 0 0 0 chr6 81710965 81711000 -67806037 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1208 316 237 13 0 chr6 81711020 81711093 -67805944 + MLT2B1 LTR ERVL 3 76 -439 4 1208 489 294 57 135 chr6 81711093 81711478 -67805559 + ORR1E LTR MaLR 1 355 -4 4 1208 422 354 84 56 chr6 81711484 81711771 -67805266 + MLT2B1 LTR ERVL 72 366 -154 4 1208 3483 23 5 0 chr6 81712474 81712868 -67804169 - MTA_Mm LTR MaLR 0 396 1 4 1208 673 234 100 12 chr6 81713650 81713810 -67803227 + B3A SINE B2 2 175 -23 4 1208 423 0 0 0 chr6 81713810 81713857 -67803180 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1208 216 0 0 0 chr6 81713857 81713881 -67803156 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 4 1208 270 187 93 0 chr6 81713925 81714000 -67803037 + L1MA7 LINE L1 6207 6288 -3 4 1208 260 152 43 0 chr6 81714062 81714108 -67802929 + B3 SINE B2 13 60 -156 4 1208 264 147 96 68 chr6 81714379 81714452 -67802585 + B4 SINE B4 2 76 -216 4 1208 250 362 0 0 chr6 81714475 81714580 -67802457 + (CA)n Simple_repeat Simple_repeat 1 105 0 4 1208 348 226 183 26 chr6 81715095 81715286 -67801751 + MLT1F LTR MaLR 289 509 -39 4 1208 739 251 162 24 chr6 81717335 81717635 -67799402 + ORR1E LTR MaLR 1 372 -7 4 1208 398 278 0 65 chr6 81717706 81717829 -67799208 + PB1D10 SINE Alu 2 116 -1 4 1208 272 304 39 19 chr6 81717946 81718050 -67798987 - MER5A1 DNA MER1_type -17 149 44 4 1208 684 268 17 0 chr6 81718079 81718258 -67798779 + B4 SINE B4 108 289 -3 4 1208 231 208 38 0 chr6 81718295 81718367 -67798670 + GA-rich Low_complexity Low_complexity 1 74 0 4 1208 210 191 0 0 chr6 81718935 81718977 -67798060 + GA-rich Low_complexity Low_complexity 1 42 0 4 1208 30 27 0 0 chr6 81719524 81719561 -67797476 + AT_rich Low_complexity Low_complexity 1 37 0 4 1208 598 300 88 8 chr6 81719852 81720101 -67796936 + MER2 DNA MER2_type 77 345 0 4 1208 259 269 71 78 chr6 81721470 81721611 -67795426 + RMER15 LTR ERVL 21 160 -415 4 1208 356 311 49 8 chr6 81721703 81721826 -67795211 + RMER15 LTR ERVL 426 553 -22 4 1208 480 266 16 115 chr6 81722316 81722499 -67794538 + RSINE1 SINE B4 1 165 0 4 1208 1447 146 212 23 chr6 81722760 81723104 -67793933 + RMER17C LTR ERVK 1 409 -1 4 1208 201 159 0 0 chr6 81723180 81723224 -67793813 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 4 1208 5977 49 14 0 chr6 81723282 81724014 -67793023 + L1Md_F3 LINE L1 5829 6570 -14 4 1208 222 118 0 0 chr6 81724758 81724792 -67792245 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1208 647 108 0 9 chr6 81725572 81725684 -67791353 + (GA)n Simple_repeat Simple_repeat 2 112 0 4 1208 251 213 33 0 chr6 81725804 81725865 -67791172 + CT-rich Low_complexity Low_complexity 1 63 0 4 1208 226 243 120 46 chr6 81725876 81725984 -67791053 + MTE2b LTR MaLR 264 379 0 4 1208 1357 215 43 41 chr6 81726778 81727147 -67789890 - ORR1D2 LTR MaLR 0 370 1 4 1208 538 246 221 6 chr6 81727189 81727361 -67789676 + B3 SINE B2 3 211 -5 4 1208 371 316 110 80 chr6 81727407 81727734 -67789303 - ORR1E LTR MaLR -17 342 6 4 1208 1335 91 0 0 chr6 81728216 81728759 -67788278 + (TG)n Simple_repeat Simple_repeat 1 543 0 4 1208 1314 78 0 0 chr6 81728779 81728959 -67788078 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1208 510 258 44 97 chr6 81729474 81729680 -67787357 + MTEa LTR MaLR 1 195 -184 4 1208 671 269 25 30 chr6 81730163 81730362 -67786675 - B3A SINE B2 0 198 1 4 1208 399 318 70 6 chr6 81730667 81730838 -67786199 - MLT1J2 LTR MaLR -22 426 245 4 1208 238 87 21 21 chr6 81731317 81731364 -67785673 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1208 265 265 0 56 chr6 81731432 81731504 -67785533 + RMER30 DNA MER1_type 133 200 -2 4 1208 278 194 15 0 chr6 81731705 81731772 -67785265 + (CATA)n Simple_repeat Simple_repeat 3 70 0 4 1208 884 271 97 22 chr6 81732264 81732532 -67784505 - B4A SINE B4 -3 289 2 4 1208 353 221 164 52 chr6 81733695 81733829 -67783208 - RMER15 LTR ERVL -17 558 410 4 1208 248 244 151 34 chr6 81734798 81734917 -67782120 + MLT1A0 LTR MaLR 226 358 -7 4 1208 664 295 60 4 chr6 81735854 81736089 -67780948 + B4A SINE B4 35 282 -10 4 1208 189 340 68 34 chr6 81736380 81736526 -67780511 - L2a LINE L2 -2 3424 3274 4 1208 405 241 208 30 chr6 81736804 81737052 -67779985 - ORR1E LTR MaLR -3 376 50 4 1208 938 254 62 52 chr6 81737197 81737521 -67779516 + ORR1E LTR MaLR 1 327 -32 4 1208 285 182 0 0 chr6 81737546 81737601 -67779436 + GA-rich Low_complexity Low_complexity 5 59 0 4 1208 462 312 57 0 chr6 81737988 81738180 -67778857 + MER34 LTR ERV1 9 211 -331 4 1208 366 23 0 0 chr6 81738346 81738389 -67778648 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1208 421 276 20 205 chr6 81738486 81738645 -67778392 + L1MA4 LINE L1 5594 5736 -1960 4 1208 658 264 16 22 chr6 81738645 81738827 -67778210 + B3A SINE B2 2 182 -16 4 1208 663 236 10 52 chr6 81738827 81739020 -67778017 + L1MA4 LINE L1 5737 5918 -382 4 1208 2539 70 3 0 chr6 81739237 81739553 -67777484 - L1Md_F2 LINE L1 -211 5672 5356 4 1208 6967 82 15 12 chr6 81739553 81740483 -67776554 + L1Md_F2 LINE L1 5646 6578 -4 4 1208 293 378 9 0 chr6 81740949 81741060 -67775977 + LTR16B LTR ERVL 5 116 -347 4 1208 266 354 0 47 chr6 81741468 81741554 -67775483 - RSINE1 SINE B4 0 165 84 4 1208 758 291 9 13 chr6 81742452 81742678 -67774359 + B4 SINE B4 5 229 -63 4 1208 277 197 13 154 chr6 81742803 81742881 -67774156 + B4 SINE B4 226 292 0 4 1208 21 0 0 0 chr6 81743178 81743199 -67773838 + AT_rich Low_complexity Low_complexity 1 21 0 4 1208 637 250 81 35 chr6 81744076 81744250 -67772787 + B3A SINE B2 1 182 -16 4 1208 22 0 0 0 chr6 81744259 81744281 -67772756 + AT_rich Low_complexity Low_complexity 1 22 0 4 1208 234 352 18 9 chr6 81745208 81745317 -67771720 - MIRb SINE MIR -105 163 54 4 1208 488 256 112 0 chr6 81745431 81745591 -67771446 + ORR1E LTR MaLR 5 182 -177 4 1208 497 125 8 132 chr6 81746289 81746418 -67770619 - Lx4B LINE L1 0 7058 6946 4 1208 804 124 0 0 chr6 81746425 81746538 -67770499 - Lx5 LINE L1 -251 6799 6687 4 1208 310 237 55 10 chr6 81746918 81747019 -67770018 - B1F2 SINE Alu -34 115 9 4 1208 240 333 0 0 chr6 81746966 81747026 -67770011 - B4A SINE B4 -146 146 87 4 1208 987 222 39 15 chr6 81747543 81747749 -67769288 - B3 SINE B2 -5 211 1 4 1208 1128 75 7 0 chr6 81747878 81748024 -67769013 - B1_Mus1 SINE Alu -1 147 1 4 1208 972 276 110 15 chr6 81748841 81749176 -67767861 + MTE2b LTR MaLR 1 367 -12 4 1208 209 254 14 40 chr6 81749552 81749626 -67767411 + GA-rich Low_complexity Low_complexity 2 73 0 4 1208 594 271 25 50 chr6 81749952 81750154 -67766883 + B3A SINE B2 1 197 -1 4 1208 316 143 14 14 chr6 81750163 81750234 -67766803 + GA-rich Low_complexity Low_complexity 2 72 0 4 1208 366 261 291 35 chr6 81751413 81751485 -67765552 - B4 SINE B4 0 292 217 4 1208 357 86 0 0 chr6 81751485 81751543 -67765494 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 4 1208 366 261 291 35 chr6 81751543 81751700 -67765337 - B4 SINE B4 -76 216 5 4 1208 441 324 11 58 chr6 81752191 81752381 -67764656 + B4A SINE B4 46 226 -66 4 1208 1661 185 34 63 chr6 81752852 81753232 -67763805 - ORR1D1 LTR MaLR -5 369 1 4 1208 254 180 16 0 chr6 81753351 81753412 -67763625 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1208 452 201 212 22 chr6 81753412 81753549 -67763488 - RSINE1 SINE B4 0 165 3 4 1208 641 211 258 5 chr6 81753549 81753731 -67763306 - B4A SINE B4 -62 230 2 4 1208 216 0 0 0 chr6 81755273 81755297 -67761740 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1208 294 337 30 51 chr6 81755856 81756053 -67760984 + L2a LINE L2 2843 3035 -384 4 1208 190 239 0 21 chr6 81756226 81756273 -67760764 + L2a LINE L2 3112 3157 -269 4 1208 1579 251 68 52 chr6 81757238 81758115 -67758922 + RMER1B Other Other 1 517 -549 4 1208 436 240 162 38 chr6 81758328 81758488 -67758549 + B3A SINE B2 3 182 -16 4 1208 414 175 0 0 chr6 81758488 81758568 -67758469 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1208 38 22 0 0 chr6 81758568 81758613 -67758424 + AT_rich Low_complexity Low_complexity 1 45 0 5 1208 343 202 25 12 chr6 81758613 81758693 -67758344 - MTE2a LTR MaLR -30 349 269 5 1208 314 280 67 39 chr6 81759036 81759140 -67757897 + PB1D10 SINE Alu 2 108 -9 5 1208 265 255 178 25 chr6 81759288 81759445 -67757592 + ID_B1 SINE B4 1 181 -43 5 1208 773 268 78 64 chr6 81760077 81760160 -67756877 + B4A SINE B4 2 84 -208 5 1208 207 0 0 0 chr6 81760160 81760183 -67756854 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1208 773 268 78 64 chr6 81760183 81760382 -67756655 + B4A SINE B4 85 288 -4 5 1208 441 0 0 0 chr6 81760385 81760434 -67756603 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1208 2501 129 111 35 chr6 81760546 81760854 -67756183 - RMER6A LTR ERVK 0 690 338 5 1208 531 45 0 0 chr6 81760854 81760920 -67756117 + (TC)n Simple_repeat Simple_repeat 2 67 0 5 1208 2501 108 96 32 chr6 81760920 81761216 -67755821 - RMER6A LTR ERVK -405 351 25 5 1208 490 326 88 7 chr6 81761551 81761823 -67755214 - RMER15 LTR ERVL -2 573 280 5 1208 302 253 13 0 chr6 81762005 81762080 -67754957 - MER21B LTR ERV1 -294 569 494 5 1208 349 231 35 103 chr6 81762377 81762493 -67754544 + PB1D10 SINE Alu 4 111 -6 5 1208 237 246 0 15 chr6 81762918 81762984 -67754053 + Lx8 LINE L1 7409 7473 0 5 1208 605 294 78 13 chr6 81763495 81763726 -67753311 - B4A SINE B4 -45 247 2 5 1208 477 0 0 0 chr6 81763959 81764012 -67753025 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1208 310 318 99 27 chr6 81764038 81764300 -67752737 + B4A SINE B4 2 282 -10 5 1208 259 360 46 0 chr6 81764511 81764664 -67752373 + L1M5 LINE L1 5492 5651 -522 5 1208 436 203 0 0 chr6 81765001 81765075 -67751962 + RSINE1 SINE B4 3 76 -89 5 1208 396 0 0 0 chr6 81765103 81765147 -67751890 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1208 486 0 0 0 chr6 81765181 81765235 -67751802 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1208 321 26 0 0 chr6 81765894 81765932 -67751105 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1208 1196 240 71 20 chr6 81766559 81766912 -67750125 + MTEa LTR MaLR 9 379 0 5 1208 183 80 0 0 chr6 81767355 81767380 -67749657 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1208 180 77 0 0 chr6 81767913 81767939 -67749098 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1208 213 94 0 0 chr6 81767941 81767973 -67749064 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1208 432 261 29 98 chr6 81768414 81768588 -67748449 + RSINE1 SINE B4 4 165 0 5 1208 594 202 0 48 chr6 81768599 81769046 -67747991 + (CA)n Simple_repeat Simple_repeat 1 425 0 5 1208 376 276 148 7 chr6 81769099 81769234 -67747803 - RSINE1 SINE B4 -1 164 11 5 1208 801 173 0 0 chr6 81769248 81769381 -67747656 - B1_Mur4 SINE Alu -9 141 9 5 1208 296 294 52 71 chr6 81769266 81769420 -67747617 - MT2B LTR ERVL -323 278 128 5 1208 882 274 65 8 chr6 81769899 81770160 -67746877 - B4 SINE B4 -12 280 5 5 1208 378 274 82 52 chr6 81771017 81771152 -67745885 - B1F SINE Alu -4 145 7 5 1208 509 215 66 7 chr6 81771344 81771480 -67745557 - MTD LTR MaLR -14 405 262 5 1208 297 161 0 46 chr6 81771472 81771537 -67745500 - MTD LTR MaLR -357 62 1 5 1208 898 257 8 60 chr6 81771547 81771812 -67745225 - ORR1E LTR MaLR -104 255 5 5 1208 499 259 143 11 chr6 81771815 81772080 -67744957 - L1MB8 LINE L1 -26 6152 5853 5 1208 1096 304 51 8 chr6 81772188 81772559 -67744478 - MTD LTR MaLR -15 404 18 5 1208 842 348 103 20 chr6 81772832 81773287 -67743750 - MER90a LTR ERV1 -69 545 53 5 1208 715 262 6 0 chr6 81773360 81773520 -67743517 + RSINE1 SINE B4 5 165 0 5 1208 871 230 0 0 chr6 81773558 81773723 -67743314 + B3A SINE B2 3 167 -31 5 1208 297 0 0 0 chr6 81773725 81773758 -67743279 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1208 228 250 0 0 chr6 81774232 81774240 -67742797 + (CG)n Simple_repeat Simple_repeat 2 9 0 5 1208 225 0 0 0 chr6 81774240 81774265 -67742772 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1208 228 250 0 0 chr6 81774265 81774304 -67742733 + (CG)n Simple_repeat Simple_repeat 2 40 0 5 1208 703 250 10 62 chr6 81774451 81774660 -67742377 - B3A SINE B2 0 198 1 5 1208 9413 83 47 22 chr6 81774792 81776165 -67740872 + Lx2 LINE L1 5590 6997 0 5 1208 408 272 40 0 chr6 81776187 81776312 -67740725 - ID_B1 SINE B4 -8 216 87 5 1208 516 316 35 12 chr6 81776804 81776974 -67740063 - Lx8 LINE L1 -217 7256 7083 5 1208 477 110 0 0 chr6 81777005 81777087 -67739950 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 1208 6667 219 70 16 chr6 81777087 81777441 -67739596 - Lx6 LINE L1 -204 7256 6883 5 1208 531 0 0 0 chr6 81777441 81777500 -67739537 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1208 6874 212 44 23 chr6 81777500 81778976 -67738061 - Lx6 LINE L1 -578 6882 5355 5 1208 1051 208 37 5 chr6 81778980 81779197 -67737840 + URR1B DNA MER1_type 1 224 -1 5 1208 889 151 37 5 chr6 81779198 81779385 -67737652 - Lx6 LINE L1 -526 5354 5162 5 1208 40556 28 2 6 chr6 81779382 81785603 -67731434 - L1Md_A LINE L1 -1 6581 391 5 1208 2679 160 57 29 chr6 81785604 81786164 -67730873 - Lx6 LINE L1 -706 5174 4599 5 1208 1020 226 84 0 chr6 81786162 81786388 -67730649 + Lx6 LINE L1 6222 6466 -994 5 1208 4993 65 5 9 chr6 81786476 81787116 -67729921 + L1Md_F2 LINE L1 5936 6574 -8 5 1208 1262 34 0 0 chr6 81787116 81787262 -67729775 + B1_Mus2 SINE Alu 1 146 -1 5 1208 4993 65 5 9 chr6 81787262 81787332 -67729705 + L1Md_F2 LINE L1 6575 6582 0 5 1208 591 272 13 6 chr6 81787342 81787501 -67729536 + RSINE1 SINE B4 3 162 -3 5 1208 21 57 0 0 chr6 81787905 81787940 -67729097 + AT_rich Low_complexity Low_complexity 1 35 0 5 1208 222 171 21 74 chr6 81787943 81788038 -67728999 + (TATAA)n Simple_repeat Simple_repeat 1 90 0 5 1208 227 244 38 25 chr6 81788196 81788276 -67728761 + L1ME3B LINE L1 5951 6031 -209 5 1208 649 229 35 7 chr6 81788735 81788880 -67728157 + B3A SINE B2 2 150 -48 5 1209 322 169 195 0 chr6 81789343 81789420 -67727617 + RSINE1 SINE B4 74 165 0 5 1209 22 35 0 0 chr6 81789421 81789450 -67727587 + AT_rich Low_complexity Low_complexity 1 29 0 5 1209 270 0 0 0 chr6 81789708 81789738 -67727299 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 5 1209 342 0 0 0 chr6 81790197 81790235 -67726802 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1209 37 39 0 0 chr6 81790304 81790355 -67726682 + AT_rich Low_complexity Low_complexity 1 51 0 5 1209 602 175 0 7 chr6 81790670 81790814 -67726223 + CT-rich Low_complexity Low_complexity 2 144 0 5 1209 927 164 0 6 chr6 81791449 81791609 -67725428 - RLTR28 LTR ERVL -365 159 1 5 1209 1060 174 50 5 chr6 81791628 81791847 -67725190 - RLTR14 LTR ERV1 0 382 154 5 1209 621 127 0 0 chr6 81791833 81791943 -67725094 - RLTR28 LTR ERVL -250 274 165 5 1209 1075 143 13 65 chr6 81791961 81792076 -67724961 + RLTR28 LTR ERVL 292 396 -128 5 1209 3709 182 31 44 chr6 81792076 81792942 -67724095 - RLTR13A LTR ERVK 0 855 1 5 1209 1075 143 13 65 chr6 81792942 81793057 -67723980 + RLTR28 LTR ERVL 397 510 -14 5 1209 2626 231 58 12 chr6 81793120 81793778 -67723259 - L1_Mur3 LINE L1 0 5880 5193 5 1209 270 300 67 45 chr6 81793789 81793967 -67723070 - RMER2 LTR ERV1 0 567 386 5 1209 486 0 0 0 chr6 81794243 81794297 -67722740 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1209 2090 218 147 84 chr6 81794343 81795090 -67721947 - L1_Mur3 LINE L1 -692 5188 4390 5 1209 1496 203 145 114 chr6 81795090 81795552 -67721485 + MT2A LTR ERVL 1 487 -46 5 1209 383 0 0 21 chr6 81795552 81795600 -67721437 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 5 1209 1496 203 145 114 chr6 81795600 81795654 -67721383 + MT2A LTR ERVL 488 533 0 5 1209 2090 218 147 84 chr6 81795654 81795676 -67721361 - L1_Mur3 LINE L1 -1491 4389 4371 5 1209 833 294 32 29 chr6 81795695 81796003 -67721034 + Lx8 LINE L1 6248 6556 -917 5 1209 3427 113 42 33 chr6 81796420 81797034 -67720003 + RLTR5_Mm LTR ERV1 9 628 0 5 1209 405 58 0 0 chr6 81797166 81797218 -67719819 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1209 1373 274 94 30 chr6 81797363 81797864 -67719173 + Lx7 LINE L1 6566 7098 -598 5 1209 282 217 12 12 chr6 81798923 81799007 -67718030 + C-rich Low_complexity Low_complexity 2 85 0 5 1209 4494 158 9 5 chr6 81799638 81800395 -67716642 + L1Md_F2 LINE L1 446 1205 -5519 5 1209 31676 54 1 0 chr6 81800401 81804423 -67712614 + L1Md_F2 LINE L1 1170 5193 -690 5 1209 2996 18 3 0 chr6 81804423 81804759 -67712278 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1209 22027 40 35 14 chr6 81804759 81807448 -67709589 + IAPEz-int LTR ERVK 8 2751 -3730 5 1209 29681 12 2 0 chr6 81807440 81810672 -67706365 + IAPEz-int LTR ERVK 3244 6481 0 5 1209 2996 18 3 0 chr6 81810672 81811008 -67706029 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1209 3442 35 0 0 chr6 81811008 81811406 -67705631 + L1Md_F2 LINE L1 5188 5585 -298 5 1209 8124 48 2 8 chr6 81811407 81812409 -67704628 + L1Md_F2 LINE L1 5587 6582 0 5 1209 282 241 99 27 chr6 81812435 81812546 -67704491 - PB1D7 SINE Alu -1 119 1 5 1209 3651 68 2 6 chr6 81812643 81813117 -67703920 - L1Md_F2 LINE L1 -1 6581 6110 5 1209 477 0 0 0 chr6 81813145 81813198 -67703839 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1209 2633 114 123 7 chr6 81813324 81813756 -67703281 - RLTR45 LTR ERVK 0 482 1 5 1209 2940 77 16 3 chr6 81814521 81814901 -67702136 - IAPEY_LTR LTR ERVK 0 385 1 5 1209 21422 64 3 6 chr6 81814901 81817620 -67699417 - IAPEy-int LTR ERVK 0 7513 4804 5 1209 6949 116 11 15 chr6 81817620 81818682 -67698355 - IAPEy-int LTR ERVK -6455 1058 1 5 1209 2877 90 16 3 chr6 81818682 81819062 -67697975 - IAPEY_LTR LTR ERVK 0 385 1 5 1209 40013 32 1 0 chr6 81819136 81825271 -67691766 - L1Md_A LINE L1 -1 6581 440 5 1209 5294 61 48 7 chr6 81825861 81826639 -67690398 - RLTR13C2 LTR ERVK 0 902 1 5 1209 225 347 42 8 chr6 81826795 81826914 -67690123 - MLT-int LTR MaLR -198 1537 1415 5 1209 1211 134 27 5 chr6 81827224 81827411 -67689626 + B2_Mm2 SINE B2 4 194 -1 5 1209 294 274 35 49 chr6 81827501 81827643 -67689394 - RLTR42-int LTR ERVK -4122 1400 1261 5 1209 322 277 57 32 chr6 81828177 81828398 -67688639 - L1M4 LINE L1 -5141 1593 1388 5 1209 252 256 26 0 chr6 81828499 81828577 -67688460 + GA-rich Low_complexity Low_complexity 2 81 0 5 1209 189 154 0 0 chr6 81828588 81828627 -67688410 + (CAGGA)n Simple_repeat Simple_repeat 2 40 0 5 1209 272 253 0 39 chr6 81828637 81828715 -67688322 + GA-rich Low_complexity Low_complexity 3 77 0 5 1209 2969 107 27 35 chr6 81828947 81829433 -67687604 - RLTR45 LTR ERVK 0 482 1 5 1209 185 255 0 0 chr6 81829587 81829638 -67687399 + MIR SINE MIR 142 192 -70 5 1209 265 286 14 0 chr6 81829640 81829710 -67687327 + ID4_ SINE ID 2 72 -11 5 1209 264 30 0 0 chr6 81829816 81829849 -67687188 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 6 1209 256 228 74 25 chr6 81829861 81829942 -67687095 + L3 LINE CR1 4262 4346 -143 6 1209 367 307 0 0 chr6 81830049 81830150 -67686887 + PB1D10 SINE Alu 3 103 -14 6 1209 2256 155 4 62 chr6 81830440 81830907 -67686130 + RMER6B LTR ERVK 22 461 0 6 1209 443 253 0 10 chr6 81831734 81831830 -67685207 + RSINE1 SINE B4 23 117 -48 6 1209 342 0 0 0 chr6 81831868 81831906 -67685131 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 6 1209 370 271 148 21 chr6 81831974 81832211 -67684826 + L1MB3 LINE L1 5785 6051 -132 6 1209 276 305 43 62 chr6 81832673 81832834 -67684203 + B4A SINE B4 33 190 -102 6 1209 288 0 0 0 chr6 81833142 81833174 -67683863 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1209 2910 232 114 46 chr6 81833875 81834075 -67682962 - RMER12B LTR ERVK 0 1404 1197 6 1209 612 83 0 0 chr6 81834075 81834171 -67682866 + (CAGAGA)n Simple_repeat Simple_repeat 6 101 0 6 1209 2910 232 114 46 chr6 81834171 81834953 -67682084 - RMER12B LTR ERVK -208 1196 355 6 1209 4910 148 45 11 chr6 81834957 81835830 -67681207 + RMER19B LTR ERVK 1 902 0 6 1209 1911 187 18 16 chr6 81835833 81836213 -67680824 - RMER12B LTR ERVK -1023 381 1 6 1209 2920 165 30 0 chr6 81837151 81837660 -67679377 - RLTR28 LTR ERVL 0 524 1 6 1209 378 0 0 0 chr6 81837678 81837720 -67679317 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1209 1547 40 5 5 chr6 81838280 81838479 -67678558 + L1Md_F3 LINE L1 6385 6583 -1 6 1209 262 286 197 8 chr6 81838780 81838907 -67678130 + RMER21B LTR ERV1 417 567 -275 6 1209 554 193 239 13 chr6 81838968 81839132 -67677905 - RMER15-int LTR ERVL -98 4901 4701 6 1209 4089 227 76 75 chr6 81839135 81840459 -67676578 - RMER15-int LTR ERVL -835 4164 2839 6 1209 3348 200 52 13 chr6 81840459 81841203 -67675834 + RMER12B LTR ERVK 1 773 -631 6 1209 893 239 24 38 chr6 81841204 81841417 -67675620 + RMER15-int LTR ERVL 3891 4100 -899 6 1209 1900 125 72 43 chr6 81841567 81841985 -67675052 + RMER12B LTR ERVK 795 1224 -180 6 1209 3345 248 101 35 chr6 81842047 81843044 -67673993 - RMER15-int LTR ERVL -2155 2844 1782 6 1209 2180 258 42 19 chr6 81843097 81843690 -67673347 - RMER15-int LTR ERVL -4376 623 17 6 1209 1366 193 90 33 chr6 81843708 81844041 -67672996 - RMER15 LTR ERVL -7 568 217 6 1209 432 97 0 0 chr6 81844046 81844108 -67672929 + (T)n Simple_repeat Simple_repeat 1 62 0 6 1209 835 223 104 8 chr6 81844121 81844361 -67672676 - RMER15 LTR ERVL -307 268 6 6 1209 722 251 244 23 chr6 81844434 81844951 -67672086 + L1_Mur3 LINE L1 3655 4285 -1595 6 1209 451 305 94 7 chr6 81845257 81845441 -67671596 - ID_B1 SINE B4 -44 248 51 6 1209 430 211 0 80 chr6 81846300 81846313 -67670724 + MT2B LTR ERVL 153 156 -445 6 1209 782 39 0 0 chr6 81846313 81846417 -67670620 + B1_Mm SINE Alu 2 105 -42 6 1209 573 269 51 113 chr6 81848497 81848790 -67668247 + B4A SINE B4 18 292 0 6 1209 838 327 46 25 chr6 81849932 81850327 -67666710 - Ricksha_c DNA MuDR -1245 803 401 6 1209 544 253 53 48 chr6 81850869 81851097 -67665940 + L1MB3 LINE L1 5823 6051 -132 6 1209 406 332 79 43 chr6 81851189 81851469 -67665568 - B4 SINE B4 0 292 3 6 1209 415 299 55 65 chr6 81851687 81851880 -67665157 + B4A SINE B4 1 190 -102 6 1209 1517 185 169 130 chr6 81851880 81852309 -67664728 + MT2A LTR ERVL 1 465 -68 6 1209 769 29 19 10 chr6 81852309 81852413 -67664624 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 6 1209 1517 185 169 130 chr6 81852413 81852492 -67664545 + MT2A LTR ERVL 466 529 -4 6 1209 415 299 55 65 chr6 81852492 81852591 -67664446 + B4A SINE B4 191 290 -2 6 1209 515 297 21 21 chr6 81852831 81852972 -67664065 + B3 SINE B2 18 158 -58 6 1209 23442 63 2 0 chr6 81853046 81856001 -67661036 + L1Md_F2 LINE L1 2626 5586 -297 6 1209 8391 41 3 0 chr6 81856001 81856994 -67660043 + L1Md_F2 LINE L1 5587 6582 0 6 1209 985 222 201 10 chr6 81857017 81857331 -67659706 - ORR1D1 LTR MaLR 0 374 1 6 1209 760 320 20 20 chr6 81857532 81857787 -67659250 - B4A SINE B4 -11 281 27 6 1209 381 267 98 16 chr6 81857821 81857943 -67659094 - B1F2 SINE Alu -7 142 11 6 1209 297 0 0 0 chr6 81857961 81857994 -67659043 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1209 674 84 19 0 chr6 81859484 81859591 -67657446 - PB1D9 SINE Alu -10 110 2 6 1209 216 0 0 0 chr6 81859627 81859651 -67657386 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1209 825 50 207 0 chr6 81859742 81859863 -67657174 + B1_Mm SINE Alu 2 147 0 6 1209 567 147 0 0 chr6 81860951 81861053 -67655984 + (TA)n Simple_repeat Simple_repeat 1 102 0 6 1209 271 215 178 125 chr6 81861656 81861850 -67655187 + RMER21B LTR ERV1 270 466 -376 6 1209 1925 133 24 127 chr6 81861850 81862307 -67654730 + RMER17C LTR ERVK 1 410 0 6 1209 271 215 178 125 chr6 81862307 81862393 -67654644 + RMER21B LTR ERV1 467 565 -277 6 1209 286 233 15 0 chr6 81862552 81862685 -67654352 + CT-rich Low_complexity Low_complexity 1 135 0 6 1209 406 226 12 0 chr6 81862667 81862835 -67654202 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 6 1209 766 228 0 0 chr6 81863122 81863258 -67653779 + B1_Mur1 SINE Alu 2 137 -12 6 1209 965 177 0 0 chr6 81863410 81863557 -67653480 + B1_Mur4 SINE Alu 2 148 -2 6 1209 1069 266 17 24 chr6 81863691 81863984 -67653053 + MTD LTR MaLR 1 291 -128 6 1209 326 290 51 0 chr6 81864471 81864609 -67652428 - MLT-int LTR MaLR -192 1543 1399 6 1209 381 313 40 52 chr6 81864615 81864871 -67652166 - MLT-int LTR MaLR -457 1278 971 6 1209 610 342 60 26 chr6 81864906 81865257 -67651780 - MLT2B3 LTR ERVL -135 419 57 6 1209 368 224 105 101 chr6 81865919 81866072 -67650965 - L1MA8 LINE L1 -1 6290 6132 6 1209 402 302 8 8 chr6 81866072 81866189 -67650848 + PB1D7 SINE Alu 3 119 -1 6 1209 368 224 105 101 chr6 81866189 81866273 -67650764 - L1MA8 LINE L1 -160 6131 6052 6 1209 21 57 0 0 chr6 81866928 81866963 -67650074 + AT_rich Low_complexity Low_complexity 1 35 0 6 1209 274 317 109 6 chr6 81867544 81867705 -67649332 + MIR SINE MIR 15 196 -72 6 1209 990 16 8 0 chr6 81867878 81868003 -67649034 + B1_Mm SINE Alu 21 146 -1 6 1209 251 83 49 16 chr6 81868003 81868064 -67648973 + (CAAAA)n Simple_repeat Simple_repeat 1 63 0 6 1209 396 0 0 0 chr6 81868485 81868529 -67648508 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1209 24 53 0 0 chr6 81868533 81868571 -67648466 + AT_rich Low_complexity Low_complexity 1 38 0 6 1209 312 288 53 26 chr6 81868775 81868889 -67648148 + PB1D10 SINE Alu 3 119 -1 6 1209 410 340 20 0 chr6 81869141 81869344 -67647693 + ID_B1 SINE B4 1 207 -17 6 1209 218 105 0 26 chr6 81869508 81869547 -67647490 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1209 3241 176 169 54 chr6 81869809 81870618 -67646419 + RMER19B LTR ERVK 1 902 0 6 1209 482 271 0 0 chr6 81871249 81871356 -67645681 + PB1D7 SINE Alu 5 111 -9 6 1209 331 289 190 0 chr6 81871456 81871577 -67645460 + ID_B1 SINE B4 81 224 0 6 1209 343 103 17 33 chr6 81871892 81871952 -67645085 + RLTR25A LTR ERVK 514 572 -531 6 1209 707 55 0 0 chr6 81871900 81871991 -67645046 + B1_Mus2 SINE Alu 47 137 -10 6 1209 454 245 82 20 chr6 81872004 81872200 -67644837 - Ricksha_0 DNA MuDR -123 1610 1403 6 1209 183 42 0 0 chr6 81872208 81872232 -67644805 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1209 447 19 0 0 chr6 81872345 81872397 -67644640 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1209 276 30 0 0 chr6 81872397 81872429 -67644608 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1209 561 302 43 84 chr6 81872482 81872851 -67644186 - ORR1E LTR MaLR -5 354 1 6 1209 239 297 129 0 chr6 81873120 81873221 -67643816 - RMER5 LTR ERV1 -15 519 406 6 1209 432 15 15 30 chr6 81873244 81873311 -67643726 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1209 26 30 0 0 chr6 81873834 81873867 -67643170 + GC_rich Low_complexity Low_complexity 1 33 0 6 1209 522 291 53 0 chr6 81874400 81874551 -67642486 + B3 SINE B2 2 160 -56 6 1209 653 233 98 19 chr6 81874563 81874777 -67642260 - L1MA8 LINE L1 -207 6084 5854 6 1209 268 221 45 34 chr6 81874916 81875005 -67642032 - Charlie1a DNA MER1_type 0 1455 1366 6 1209 818 286 69 13 chr6 81875038 81875343 -67641694 - Charlie1a DNA MER1_type -1123 332 11 6 1209 745 259 65 9 chr6 81875400 81875615 -67641422 - B3A SINE B2 0 216 8 6 1209 411 219 123 0 chr6 81875937 81876051 -67640986 - B1F SINE Alu -5 144 17 6 1209 188 307 57 0 chr6 81876156 81876244 -67640793 - MIR SINE MIR -168 94 2 6 1209 245 302 40 40 chr6 81876475 81876575 -67640462 + MER58B DNA MER1_type 219 318 -23 6 1209 382 271 36 17 chr6 81876658 81876799 -67640238 + B3A SINE B2 40 184 -14 6 1209 335 211 43 22 chr6 81876875 81876967 -67640070 + MER3 DNA MER1_type 1 94 -115 6 1209 469 271 38 0 chr6 81878116 81878249 -67638788 - B1F1 SINE Alu -7 142 5 6 1209 247 241 0 0 chr6 81878378 81878432 -67638605 + ID_B1 SINE B4 169 222 -2 6 1209 511 266 42 35 chr6 81878442 81878586 -67638451 + RSINE1 SINE B4 4 148 -17 6 1209 540 280 39 33 chr6 81878699 81878880 -67638157 - B3A SINE B2 -10 188 7 6 1209 225 128 76 13 chr6 81878890 81878969 -67638068 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 1209 227 173 0 19 chr6 81878995 81879048 -67637989 + CT-rich Low_complexity Low_complexity 3 54 0 6 1209 635 284 19 0 chr6 81879048 81879203 -67637834 - RSINE1 SINE B4 -6 159 2 6 1209 485 274 68 26 chr6 81879515 81879706 -67637331 + ID_B1 SINE B4 7 205 -19 6 1209 432 240 10 10 chr6 81879938 81880035 -67637002 + B3 SINE B2 120 216 0 6 1209 192 77 0 0 chr6 81881099 81881125 -67635912 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1209 366 23 0 0 chr6 81881495 81881538 -67635499 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1209 1412 50 33 6 chr6 81881538 81881718 -67635319 - B2_Mm2 SINE B2 -10 185 1 6 1209 792 300 38 10 chr6 81881804 81882013 -67635024 - ID_B1 SINE B4 -9 215 1 6 1209 332 268 152 60 chr6 81882150 81882301 -67634736 - RSINE1 SINE B4 0 165 1 6 1209 710 207 39 39 chr6 81882317 81882473 -67634564 - RSINE1 SINE B4 0 165 10 6 1209 186 293 189 20 chr6 81882540 81882693 -67634344 + MIRc SINE MIR 15 193 -75 6 1209 367 351 0 9 chr6 81882984 81883096 -67633941 - RSINE1 SINE B4 -9 156 46 7 1209 443 268 81 29 chr6 81883142 81883315 -67633722 - MER119 DNA MER1_type -204 379 198 7 1209 856 238 48 0 chr6 81883343 81883549 -67633488 + B3 SINE B2 1 216 0 7 1209 1100 253 53 10 chr6 81883711 81884010 -67633027 + MTD LTR MaLR 14 325 -94 7 1209 357 273 0 0 chr6 81885462 81885539 -67631498 + ID4_ SINE ID 3 79 -4 7 1209 628 207 27 20 chr6 81885598 81885746 -67631291 - B1_Mur3 SINE Alu 0 149 1 7 1209 213 189 18 36 chr6 81886265 81886320 -67630717 - PB1 SINE Alu -2 125 72 7 1209 312 231 59 99 chr6 81886507 81886608 -67630429 - PB1D10 SINE Alu -6 111 15 7 1209 851 153 14 20 chr6 81886686 81886833 -67630204 - B1_Mus2 SINE Alu 0 147 2 7 1209 539 265 6 37 chr6 81886691 81886852 -67630185 - ID_B1 SINE B4 -2 222 67 7 1209 509 232 89 27 chr6 81887216 81887362 -67629675 - RSINE1 SINE B4 -8 157 3 7 1209 266 173 39 0 chr6 81887583 81887635 -67629402 + MER58A DNA MER1_type 27 80 -144 7 1209 419 219 36 16 chr6 81888239 81888389 -67628648 - B4 SINE B4 -142 150 4 7 1209 260 140 118 20 chr6 81889064 81889115 -67627922 + PB1D10 SINE Alu 62 117 0 7 1209 189 0 0 0 chr6 81889182 81889203 -67627834 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 7 1209 21 0 0 0 chr6 81889351 81889372 -67627665 + AT_rich Low_complexity Low_complexity 1 21 0 7 1209 186 250 135 0 chr6 81889465 81889517 -67627520 + L4 LINE RTE 901 959 -1070 7 1209 244 250 56 22 chr6 81889619 81889709 -67627328 + B4 SINE B4 7 99 -193 7 1209 318 237 108 0 chr6 81889713 81889806 -67627231 - PB1D10 SINE Alu -8 109 7 7 1209 245 299 112 10 chr6 81889726 81889824 -67627213 - ID_B1 SINE B4 -48 176 69 7 1209 464 270 16 16 chr6 81889984 81890112 -67626925 - B1F SINE Alu -17 132 5 7 1209 1125 169 23 37 chr6 81890231 81890446 -67626591 - B3 SINE B2 -4 212 1 7 1209 254 148 91 76 chr6 81890959 81891025 -67626012 - tRNA-Ala-GCA tRNA tRNA -7 68 2 7 1209 23 68 0 0 chr6 81891485 81891529 -67625508 + AT_rich Low_complexity Low_complexity 1 44 0 7 1209 1997 197 19 24 chr6 81891547 81891958 -67625079 - MTC LTR MaLR -12 409 1 7 1209 493 298 40 15 chr6 81892102 81892303 -67624734 - B3 SINE B2 -10 206 1 7 1209 198 103 0 0 chr6 81893718 81893747 -67623290 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1209 285 361 0 0 chr6 81894605 81894688 -67622349 + RSINE1 SINE B4 6 88 -77 7 1209 280 279 14 14 chr6 81894924 81894993 -67622044 - ID4 SINE ID -12 71 3 7 1209 297 0 0 0 chr6 81895372 81895405 -67621632 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1209 844 108 31 0 chr6 81895406 81895535 -67621502 - B1_Mur4 SINE Alu -10 140 8 7 1209 645 269 55 0 chr6 81895585 81895730 -67621307 - RSINE1 SINE B4 -2 163 11 7 1209 183 239 22 0 chr6 81896202 81896248 -67620789 + L2c LINE L2 3341 3387 0 7 1209 338 348 219 6 chr6 81896879 81897368 -67619669 - L2 LINE L2 -764 2655 2063 7 1209 434 264 45 62 chr6 81897556 81897734 -67619303 + B4A SINE B4 1 175 -117 7 1209 495 0 0 0 chr6 81897753 81897808 -67619229 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1209 244 367 142 50 chr6 81897842 81898123 -67618914 - L2 LINE L2 -1975 1444 1138 7 1209 436 208 13 0 chr6 81898390 81898467 -67618570 + ID4_ SINE ID 3 80 -3 7 1209 217 320 147 0 chr6 81898668 81898743 -67618294 - B1_Mur3 SINE Alu -61 88 3 7 1209 1347 291 178 15 chr6 81898910 81899517 -67617520 - Lx8 LINE L1 -63 7410 6705 7 1209 816 259 11 11 chr6 81900375 81900555 -67616482 - B3A SINE B2 -18 180 1 7 1209 2114 162 113 13 chr6 81900779 81901161 -67615876 - MTC LTR MaLR 0 421 2 7 1209 575 304 42 37 chr6 81901392 81901607 -67615430 + B3 SINE B2 1 216 0 7 1209 467 270 64 26 chr6 81901810 81901966 -67615071 - MER58B DNA MER1_type -42 299 138 7 1209 306 0 0 0 chr6 81901965 81902002 -67615035 + B1_Mur4 SINE Alu 103 139 -11 7 1209 246 32 0 0 chr6 81902002 81902033 -67615004 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1209 664 214 15 15 chr6 81902059 81902192 -67614845 - B1F2 SINE Alu -6 143 11 7 1209 235 349 152 29 chr6 81903401 81903462 -67613575 + B4A SINE B4 27 218 -74 7 1209 401 290 27 27 chr6 81903462 81903572 -67613465 + PB1D7 SINE Alu 2 111 -9 7 1209 282 293 0 89 chr6 81903644 81903734 -67613303 + B3A SINE B2 87 168 -30 7 1209 759 42 0 0 chr6 81903991 81904086 -67612951 + (GGGA)n Simple_repeat Simple_repeat 4 98 0 7 1209 577 249 98 46 chr6 81904809 81905115 -67611922 - ORR1D2 LTR MaLR -4 390 17 7 1209 312 300 74 12 chr6 81905391 81905553 -67611484 + Tigger11a DNA MER2_type 318 489 -246 7 1209 339 25 0 0 chr6 81905704 81905744 -67611293 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1209 423 226 0 0 chr6 81905750 81905852 -67611185 + (TA)n Simple_repeat Simple_repeat 1 102 0 7 1209 262 277 107 19 chr6 81905865 81905968 -67611069 - PB1D9 SINE Alu -6 114 3 7 1209 1019 196 40 10 chr6 81906515 81906716 -67610321 - B3 SINE B2 -7 209 3 7 1209 382 276 39 47 chr6 81907050 81907179 -67609858 + ID_B1 SINE B4 1 128 -96 7 1209 225 0 0 0 chr6 81907777 81907802 -67609235 + (CCA)n Simple_repeat Simple_repeat 2 26 0 7 1209 204 135 0 0 chr6 81907804 81907841 -67609196 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1209 495 238 59 65 chr6 81908552 81908705 -67608332 - B3A SINE B2 -6 192 41 7 1209 279 275 44 0 chr6 81909448 81909539 -67607498 - PB1D7 SINE Alu -1 119 25 7 1209 425 148 38 22 chr6 81909784 81909881 -67607156 + B3A SINE B2 60 162 -31 7 1209 1414 156 84 23 chr6 81910804 81911113 -67605924 - ORR1A4 LTR MaLR 0 329 2 7 1209 290 257 86 0 chr6 81911118 81911188 -67605849 + B3 SINE B2 87 162 -54 7 1209 495 169 0 0 chr6 81911195 81911272 -67605765 - B3A SINE B2 -121 77 1 7 1209 216 0 0 0 chr6 81911579 81911603 -67605434 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1209 1236 41 0 0 chr6 81911603 81911749 -67605288 - B1_Mm SINE Alu 0 147 2 7 1209 407 303 36 61 chr6 81911765 81911930 -67605107 - RSINE1 SINE B4 -3 162 2 7 1209 294 73 0 0 chr6 81912211 81912252 -67604785 + (CCCCCG)n Simple_repeat Simple_repeat 2 42 0 7 1209 769 302 71 90 chr6 81912740 81913107 -67603930 + MTD LTR MaLR 46 405 -14 7 1209 287 300 0 24 chr6 81913486 81913568 -67603469 + PB1D10 SINE Alu 22 101 -16 7 1209 221 255 92 41 chr6 81913663 81913761 -67603276 - B1F SINE Alu -44 105 3 7 1209 446 270 0 11 chr6 81915164 81915254 -67601783 + B1_Mur3 SINE Alu 3 91 -58 7 1209 390 21 0 0 chr6 81916180 81916227 -67600810 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1209 609 238 90 7 chr6 81916229 81916373 -67600664 - B3A SINE B2 -42 156 1 7 1209 1245 268 114 26 chr6 81916398 81916888 -67600149 - RMER5 LTR ERV1 0 534 2 7 1209 2543 140 32 5 chr6 81917021 81917429 -67599608 + MTC LTR MaLR 3 421 0 7 1209 542 277 100 6 chr6 81917591 81917751 -67599286 + B3A SINE B2 1 175 -23 7 1209 306 0 0 0 chr6 81917760 81917794 -67599243 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1209 345 75 0 0 chr6 81917795 81917848 -67599189 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 7 1209 195 129 0 0 chr6 81917983 81918014 -67599023 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 7 1209 201 94 0 0 chr6 81918014 81918046 -67598991 + (GCTG)n Simple_repeat Simple_repeat 2 33 0 7 1209 412 329 154 0 chr6 81918495 81918638 -67598399 + B3A SINE B2 1 165 -33 7 1209 499 238 116 93 chr6 81918795 81919106 -67597931 + RMER10A LTR ERVL 122 439 -3 7 1209 562 226 0 0 chr6 81919317 81919423 -67597614 + PB1D9 SINE Alu 9 114 -6 7 1209 863 258 5 10 chr6 81919447 81919639 -67597398 + B3A SINE B2 8 198 0 7 1209 338 317 55 31 chr6 81919671 81919698 -67597339 + MTEa LTR MaLR 1 26 -353 7 151 2987 86 5 2 chr6 81919698 81920096 -67596941 - MTB LTR MaLR -1 399 1 7 1210 338 317 55 31 chr6 81920096 81920195 -67596842 + MTEa LTR MaLR 27 130 -249 7 1210 324 0 0 0 chr6 81920204 81920240 -67596797 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1210 271 121 45 0 chr6 81920259 81920325 -67596712 + MLT2B1 LTR ERVL 465 567 0 7 1210 432 0 0 0 chr6 81920437 81920485 -67596552 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 7 1210 547 43 0 0 chr6 81920489 81920559 -67596478 - B1_Mur4 SINE Alu -1 149 80 7 1210 572 242 8 0 chr6 81920562 81920682 -67596355 - B3 SINE B2 -8 208 88 7 1210 662 249 63 52 chr6 81920731 81920922 -67596115 + B3A SINE B2 1 193 -5 7 1210 560 218 0 0 chr6 81921399 81921500 -67595537 + MTEa LTR MaLR 8 108 -271 7 1210 1598 214 128 21 chr6 81921582 81922011 -67595026 - MT2A LTR ERVL -44 489 15 7 1210 839 277 88 27 chr6 81922005 81922268 -67594769 + MTEa LTR MaLR 98 376 -3 7 1210 578 311 44 25 chr6 81922713 81922917 -67594120 + Lx8 LINE L1 7032 7239 -234 7 1210 2724 83 21 40 chr6 81922931 81923360 -67593677 - BGLII LTR ERVK 0 421 1 7 1210 309 51 0 0 chr6 81923818 81923857 -67593180 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1210 581 232 0 18 chr6 81923861 81923975 -67593062 - RSINE1 SINE B4 -51 114 3 7 1210 212 54 54 0 chr6 81923978 81924015 -67593022 + (TAAAAA)n Simple_repeat Simple_repeat 4 42 0 8 1210 671 183 6 0 chr6 81924263 81924438 -67592599 + (CA)n Simple_repeat Simple_repeat 1 176 0 8 1210 369 235 0 0 chr6 81924458 81924637 -67592400 + (CA)n Simple_repeat Simple_repeat 1 179 0 8 1210 432 0 0 0 chr6 81925150 81925198 -67591839 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1210 360 284 45 0 chr6 81925199 81925287 -67591750 - B3A SINE B2 -41 157 66 8 1210 421 312 8 16 chr6 81925287 81925414 -67591623 - RSINE1 SINE B4 -37 128 3 8 1210 252 243 80 13 chr6 81925440 81925515 -67591522 + B4 SINE B4 1 80 -212 8 1210 300 27 0 0 chr6 81925519 81925556 -67591481 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 8 1210 537 345 19 43 chr6 81925568 81925777 -67591260 + B4 SINE B4 77 280 -12 8 1210 396 0 0 0 chr6 81925781 81925825 -67591212 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1210 233 355 22 22 chr6 81925909 81926001 -67591036 + MT2B2 LTR ERVL 164 255 -329 8 1210 553 234 0 0 chr6 81925924 81926018 -67591019 + PB1D10 SINE Alu 23 116 -1 8 1210 1088 188 105 64 chr6 81926770 81927066 -67589971 + MTD LTR MaLR 3 310 -109 8 1210 894 152 14 14 chr6 81927078 81927225 -67589812 - ORR1C2 LTR MaLR -69 309 163 8 1210 629 154 0 11 chr6 81927243 81927420 -67589617 + (CAGAGA)n Simple_repeat Simple_repeat 4 178 0 8 1210 636 164 0 0 chr6 81927419 81927596 -67589441 + (CA)n Simple_repeat Simple_repeat 2 178 0 8 1210 975 154 82 6 chr6 81927610 81927793 -67589244 - ORR1C2 LTR MaLR -187 197 1 8 1210 318 223 29 59 chr6 81927793 81927892 -67589145 + MTC LTR MaLR 266 407 -14 8 1210 212 245 0 19 chr6 81927955 81928009 -67589028 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1210 534 281 47 13 chr6 81928048 81928274 -67588763 - L1MA5A LINE L1 -429 5868 5605 8 1210 8091 203 31 67 chr6 81928307 81928465 -67588572 - Lx7 LINE L1 0 7696 7523 8 1210 234 91 0 0 chr6 81928465 81928498 -67588539 + (ATATG)n Simple_repeat Simple_repeat 2 34 0 8 1210 8091 203 31 67 chr6 81928498 81928956 -67588081 - Lx7 LINE L1 -174 7522 7126 8 1210 2419 128 53 0 chr6 81928956 81929330 -67587707 - ORR1B1 LTR MaLR 0 394 1 8 1210 8091 203 31 67 chr6 81929330 81930621 -67586416 - Lx7 LINE L1 -571 7125 5856 8 1210 250 266 127 0 chr6 81930712 81930791 -67586246 - L2 LINE L2 -985 2434 2346 8 1210 432 0 0 0 chr6 81930900 81930948 -67586089 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1210 758 241 115 178 chr6 81931473 81931807 -67585230 + MTE2a LTR MaLR 1 330 -49 8 1210 180 0 0 0 chr6 81931807 81931827 -67585210 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1210 758 241 115 178 chr6 81931827 81931891 -67585146 + MTE2a LTR MaLR 331 374 -5 8 1210 1197 36 0 0 chr6 81931974 81932113 -67584924 + B1_Mus2 SINE Alu 1 139 -8 8 1210 1035 100 0 0 chr6 81932113 81932263 -67584774 + (GAAA)n Simple_repeat Simple_repeat 2 151 0 8 1210 769 226 36 31 chr6 81932443 81932639 -67584398 - B3A SINE B2 -1 197 1 8 1210 276 297 218 0 chr6 81933315 81933416 -67583621 - ID_B1 SINE B4 -21 203 81 8 1210 392 0 0 20 chr6 81933517 81933566 -67583471 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1210 299 321 94 12 chr6 81933956 81934041 -67582996 - RSINE1 SINE B4 -13 152 61 8 1210 706 245 0 7 chr6 81934915 81935059 -67581978 - B1_Mur1 SINE Alu -5 144 2 8 1210 646 250 6 53 chr6 81935074 81935243 -67581794 - RSINE1 SINE B4 -2 163 3 8 1210 437 340 13 19 chr6 81935245 81935401 -67581636 - ID_B1 SINE B4 -69 155 1 8 1210 2105 84 94 7 chr6 81935688 81935987 -67581050 - ORR1A2 LTR MaLR 0 327 3 8 1210 243 310 33 53 chr6 81936280 81936430 -67580607 + L2b LINE L2 3071 3217 -158 8 1210 347 200 236 9 chr6 81936698 81936804 -67580233 + RSINE1 SINE B4 2 131 -34 8 1210 459 0 0 0 chr6 81937045 81937096 -67579941 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1210 236 299 124 52 chr6 81937151 81937345 -67579692 - MamGypLTR3 LTR Gypsy -306 533 326 8 1210 185 348 127 19 chr6 81938001 81938159 -67578878 - MIR SINE MIR -74 188 14 8 1210 588 268 147 13 chr6 81938629 81938867 -67578170 - B4A SINE B4 -20 272 3 8 1210 224 326 105 0 chr6 81938909 81938995 -67578042 - ID_B1 SINE B4 -49 175 81 8 1210 310 333 190 42 chr6 81939264 81939480 -67577557 + B4A SINE B4 1 248 -44 8 1210 260 53 26 0 chr6 81939518 81939556 -67577481 + (CATA)n Simple_repeat Simple_repeat 4 42 0 8 1210 189 0 0 0 chr6 81939567 81939588 -67577449 + (TC)n Simple_repeat Simple_repeat 1 21 0 8 1210 289 237 0 0 chr6 81939752 81939828 -67577209 + C-rich Low_complexity Low_complexity 1 76 0 8 1210 670 286 82 19 chr6 81941151 81941358 -67575679 + ID_B1 SINE B4 2 221 -3 8 1210 228 109 174 0 chr6 81941853 81941899 -67575138 - PB1D10 SINE Alu 0 117 64 8 1210 21 0 0 0 chr6 81942008 81942029 -67575008 + AT_rich Low_complexity Low_complexity 1 21 0 8 1210 299 287 62 36 chr6 81942114 81942226 -67574811 - PB1D10 SINE Alu -1 116 2 8 1210 22 35 0 0 chr6 81942403 81942432 -67574605 + AT_rich Low_complexity Low_complexity 1 29 0 8 1210 620 246 28 21 chr6 81942459 81942600 -67574437 - RSINE1 SINE B4 -15 150 9 8 1210 753 70 0 0 chr6 81942698 81942798 -67574239 + (GA)n Simple_repeat Simple_repeat 1 100 0 8 1210 257 290 122 0 chr6 81942897 81943004 -67574033 - PB1 SINE Alu -7 120 1 8 1210 508 257 149 23 chr6 81943010 81943035 -67574002 - B3A SINE B2 0 198 177 8 1210 195 69 0 0 chr6 81943035 81943064 -67573973 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 8 1210 508 257 149 23 chr6 81943064 81943213 -67573824 - B3A SINE B2 -22 176 3 8 1210 236 215 0 25 chr6 81943242 81943323 -67573714 + A-rich Low_complexity Low_complexity 4 82 0 8 1210 726 73 0 0 chr6 81943403 81943513 -67573524 + (GA)n Simple_repeat Simple_repeat 2 111 0 8 1210 555 74 0 0 chr6 81944009 81944090 -67572947 + (TG)n Simple_repeat Simple_repeat 2 82 0 8 1210 708 278 102 44 chr6 81944367 81944642 -67572395 + B4A SINE B4 2 292 0 8 1210 257 340 112 30 chr6 81945092 81945372 -67571665 - L2b LINE L2 -41 3346 3025 8 1210 298 232 101 34 chr6 81945435 81945524 -67571513 + B4 SINE B4 1 95 -197 8 1210 496 276 55 31 chr6 81945534 81945661 -67571376 + RSINE1 SINE B4 12 141 -24 8 1210 36106 27 34 8 chr6 81945661 81950734 -67566303 + L1Md_T LINE L1 379 5586 -297 8 1210 8986 14 0 0 chr6 81950734 81951730 -67565307 + L1Md_T LINE L1 5587 6582 0 8 1210 14105 183 3 194 chr6 81951730 81952886 -67564151 + L1_Mur1 LINE L1 4434 5589 -297 8 1210 8507 38 0 0 chr6 81952886 81953881 -67563156 + L1Md_A LINE L1 5587 6581 -1 8 1210 414 0 0 0 chr6 81953910 81953956 -67563081 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1210 837 270 71 36 chr6 81954581 81954861 -67562176 - B4 SINE B4 0 292 3 8 1210 21 57 0 0 chr6 81954970 81955005 -67562032 + AT_rich Low_complexity Low_complexity 1 35 0 8 1210 37293 10 12 22 chr6 81955193 81959888 -67557149 + L1Md_A LINE L1 232 4930 -953 8 1210 232 183 46 77 chr6 81959888 81959953 -67557084 - RMER20A LTR ERVK -268 248 186 8 1210 37293 10 12 22 chr6 81959953 81960607 -67556430 + L1Md_A LINE L1 4931 5586 -297 8 1210 9008 12 0 0 chr6 81960607 81961603 -67555434 + L1Md_A LINE L1 5587 6582 0 8 1210 863 267 106 64 chr6 81961651 81961963 -67555074 + MTEa LTR MaLR 55 379 0 8 1210 792 32 0 0 chr6 81962246 81962341 -67554696 + (GA)n Simple_repeat Simple_repeat 2 96 0 8 1210 238 224 0 0 chr6 81962702 81962751 -67554286 + A-rich Low_complexity Low_complexity 1 49 0 8 1210 240 315 39 15 chr6 81962790 81962891 -67554146 + PB1D7 SINE Alu 9 116 -1 8 1210 1241 248 75 47 chr6 81962901 81963261 -67553776 - MTE2b LTR MaLR -9 370 1 8 1210 686 258 90 53 chr6 81963506 81963805 -67553232 - Lx8 LINE L1 0 7473 7164 8 1210 775 156 0 0 chr6 81963920 81964042 -67552995 + B1_Mus1 SINE Alu 5 126 -22 8 1210 300 295 84 28 chr6 81963925 81964068 -67552969 + B4A SINE B4 94 244 -48 8 1210 341 333 19 0 chr6 81964361 81964466 -67552571 + MLT1G1 LTR MaLR 473 579 0 8 1210 262 125 0 51 chr6 81964623 81964682 -67552355 + CT-rich Low_complexity Low_complexity 3 58 0 8 1210 417 255 78 0 chr6 81965124 81965226 -67551811 - RSINE1 SINE B4 -36 129 20 8 1210 1088 300 4 15 chr6 81965276 81965468 -67551569 + MTEa LTR MaLR 3 194 -185 8 1210 578 36 0 35 chr6 81965468 81965554 -67551483 + (TC)n Simple_repeat Simple_repeat 2 84 0 8 1210 1088 300 4 15 chr6 81965554 81965632 -67551405 + MTEa LTR MaLR 195 270 -109 8 1210 405 54 0 0 chr6 81965634 81965690 -67551347 + (CAGA)n Simple_repeat Simple_repeat 3 58 0 8 1210 220 258 43 164 chr6 81965717 81965833 -67551204 + B2_Mm2 SINE B2 27 128 -67 8 1210 498 196 41 0 chr6 81965834 81965931 -67551106 - B1_Mur2 SINE Alu -26 123 23 8 1210 570 263 0 0 chr6 81965930 81966044 -67550993 - B3A SINE B2 -84 114 1 8 1210 621 242 90 8 chr6 81966079 81966212 -67550825 + B1_Mur1 SINE Alu 6 149 0 8 1210 2961 81 5 12 chr6 81967199 81967598 -67549439 - MTA_Mm LTR MaLR 0 396 1 8 1210 988 224 13 42 chr6 81967627 81967865 -67549172 + ORR1E LTR MaLR 1 231 -128 8 1210 321 208 9 127 chr6 81967813 81967827 -67549210 - MT2B LTR ERVL -350 251 205 8 1210 487 183 0 24 chr6 81967827 81967911 -67549126 - B1_Mur4 SINE Alu -66 84 3 8 1210 321 208 9 127 chr6 81967911 81967923 -67549114 - MT2B LTR ERVL -350 204 155 8 1210 459 0 0 0 chr6 81968175 81968226 -67548811 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1210 792 234 0 0 chr6 81968255 81968400 -67548637 - RSINE1 SINE B4 -18 147 3 8 1210 206 62 31 0 chr6 81968876 81968908 -67548129 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 8 1210 829 226 22 11 chr6 81969406 81969589 -67547448 - B3A SINE B2 -13 185 1 8 1210 742 211 0 11 chr6 81969840 81970022 -67547015 + (TA)n Simple_repeat Simple_repeat 1 180 0 8 1210 403 210 50 0 chr6 81970138 81970238 -67546799 - L1MD3 LINE L1 -103 7892 7788 8 1210 250 322 85 11 chr6 81970245 81970339 -67546698 - PB1D7 SINE Alu 0 120 20 9 1210 559 224 92 59 chr6 81970356 81970508 -67546529 + B3A SINE B2 28 184 -14 9 1210 198 0 0 0 chr6 81970526 81970548 -67546489 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 9 1210 2039 197 49 8 chr6 81971038 81971427 -67545610 - MTD LTR MaLR -14 405 1 9 1210 641 280 30 66 chr6 81971452 81971754 -67545283 - B4A SINE B4 0 292 2 9 1210 330 229 26 87 chr6 81971799 81971914 -67545123 + MER106B DNA MER1_type 52 159 -900 9 1210 730 208 14 7 chr6 81972263 81972408 -67544629 + B1_Mus2 SINE Alu 1 146 -1 9 1210 716 253 37 21 chr6 81972420 81972610 -67544427 + B3A SINE B2 1 193 -5 9 1210 255 286 39 48 chr6 81972783 81972886 -67544151 - MIRb SINE MIR -1 267 166 9 1210 662 232 43 0 chr6 81972886 81973024 -67544013 + MTEa LTR MaLR 1 144 -235 9 1210 1097 77 0 13 chr6 81973180 81973338 -67543699 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 9 1210 1225 49 0 0 chr6 81973338 81973481 -67543556 - B1_Mm SINE Alu -2 145 3 9 1210 525 236 24 0 chr6 81973578 81973701 -67543336 + Lx9 LINE L1 7351 7476 -168 9 1210 248 194 32 0 chr6 81973712 81973774 -67543263 + Lx9 LINE L1 7537 7600 -44 9 1210 1064 326 68 29 chr6 81973783 81974238 -67542799 + MLT2B2 LTR ERVL 43 515 0 9 1210 236 197 40 40 chr6 81974341 81974415 -67542622 - L1MDa LINE L1 -6467 166 93 9 1210 726 245 36 63 chr6 81974734 81974956 -67542081 - B3A SINE B2 0 216 1 9 1210 255 238 75 9 chr6 81975246 81975352 -67541685 + L1MEg LINE L1 1267 1379 -4705 9 1210 249 257 0 0 chr6 81975353 81975462 -67541575 + (CA)n Simple_repeat Simple_repeat 2 110 0 9 1210 248 218 37 49 chr6 81975480 81975562 -67541475 + RLTR40 LTR ERVK 565 645 -172 9 1210 293 274 59 169 chr6 81976034 81976289 -67540748 + LTR33B LTR ERVL 85 311 -192 9 1210 213 293 0 79 chr6 81976302 81976391 -67540646 + B3 SINE B2 4 85 -131 9 1210 685 261 0 0 chr6 81976323 81976453 -67540584 + RSINE1 SINE B4 19 148 -17 9 1210 387 311 119 58 chr6 81976695 81977161 -67539876 + MLT1F-int LTR MaLR 1557 1716 -19 9 1210 508 254 35 0 chr6 81977345 81977459 -67539578 + MTE2b LTR MaLR 1 118 -261 9 1210 1209 185 121 239 chr6 81977462 81978016 -67539021 + MT2A LTR ERVL 2 486 -47 9 1210 323 23 23 0 chr6 81978016 81978060 -67538977 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 9 1210 1209 185 121 239 chr6 81978060 81978108 -67538929 + MT2A LTR ERVL 487 533 0 9 1210 920 223 20 155 chr6 81978108 81978405 -67538632 + MTE2b LTR MaLR 116 371 -8 9 1210 216 0 0 0 chr6 81979136 81979160 -67537877 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 9 1210 563 214 59 79 chr6 81979179 81979331 -67537706 - B1_Mur1 SINE Alu 0 149 1 9 1210 404 198 116 42 chr6 81979376 81979471 -67537566 - B1_Mur3 SINE Alu -6 143 42 9 1210 228 215 28 147 chr6 81979406 81979515 -67537522 - MT2B LTR ERVL -344 257 162 9 1210 527 244 224 39 chr6 81979515 81979694 -67537343 - B3 SINE B2 -3 213 2 9 1210 284 208 128 13 chr6 81980723 81980801 -67536236 - PB1D7 SINE Alu -33 87 1 9 1210 558 238 31 75 chr6 81980818 81980977 -67536060 + B3A SINE B2 3 154 -44 9 1210 650 35 12 0 chr6 81980977 81981062 -67535975 + (CA)n Simple_repeat Simple_repeat 1 86 0 9 1210 252 100 50 0 chr6 81981096 81981136 -67535901 - L1MA7 LINE L1 -139 6152 6111 9 1210 2547 181 87 19 chr6 81981143 81981662 -67535375 - RLTR20B2 LTR ERVK -6 554 1 9 1210 1396 303 42 18 chr6 81981662 81981724 -67535313 - L1MA7 LINE L1 -176 6115 6056 9 1210 1470 68 21 0 chr6 81981724 81981915 -67535122 + B2_Mm2 SINE B2 1 195 0 9 1210 1396 303 42 18 chr6 81981915 81982397 -67534640 - L1MA7 LINE L1 -236 6055 5558 9 1210 25 51 0 0 chr6 81983024 81983063 -67533974 + AT_rich Low_complexity Low_complexity 1 39 0 9 1210 324 0 0 0 chr6 81983063 81983099 -67533938 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1210 562 269 0 16 chr6 81983103 81983224 -67533813 - B3A SINE B2 -47 151 33 9 1210 611 297 136 45 chr6 81983549 81983859 -67533178 - MTE2a LTR MaLR -2 377 40 9 1210 483 270 89 70 chr6 81984043 81984314 -67532723 - B4A SINE B4 -13 279 4 9 1210 1114 128 56 0 chr6 81984325 81984505 -67532532 - URR1A DNA MER1_type 0 226 37 9 1210 609 250 8 39 chr6 81984709 81984838 -67532199 + RSINE1 SINE B4 13 137 -28 9 1210 297 0 0 0 chr6 81984840 81984873 -67532164 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1210 822 159 0 0 chr6 81984901 81985046 -67531991 + CT-rich Low_complexity Low_complexity 3 147 0 9 1210 4195 75 35 51 chr6 81985116 81985169 -67531868 + MT2B2 LTR ERVL 1 39 -545 9 1210 1205 54 0 0 chr6 81985169 81985316 -67531721 - B1_Mm SINE Alu 0 147 1 9 1210 4195 75 35 51 chr6 81985316 81985855 -67531182 + MT2B2 LTR ERVL 40 584 0 9 1210 495 282 15 22 chr6 81986100 81986234 -67530803 - ID_B1 SINE B4 -4 220 88 9 1210 5169 56 0 0 chr6 81986254 81986877 -67530160 - L1_Mus1 LINE L1 0 6567 5945 9 1210 695 283 54 0 chr6 81986948 81987114 -67529923 - ID_B1 SINE B4 -16 208 34 9 1210 224 323 31 31 chr6 81987595 81987691 -67529346 - PB1D7 SINE Alu -3 117 22 9 1210 942 283 83 80 chr6 81987730 81987905 -67529132 + MTE2a LTR MaLR 39 216 -163 9 1210 543 188 25 8 chr6 81987905 81988023 -67529014 - PB1D9 SINE Alu 0 120 1 9 1210 942 283 83 80 chr6 81988023 81988185 -67528852 + MTE2a LTR MaLR 217 377 -2 9 1210 467 224 19 112 chr6 81988252 81988413 -67528624 - B1F SINE Alu -2 147 2 9 1210 417 39 0 0 chr6 81989000 81989051 -67527986 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1210 252 250 0 35 chr6 81989074 81989132 -67527905 - RSINE1 SINE B4 -96 69 14 9 1210 370 284 34 25 chr6 81989149 81989268 -67527769 - PB1D7 SINE Alu 0 120 1 9 1210 249 268 45 68 chr6 81990202 81990290 -67526747 - MIR SINE MIR -67 141 56 9 1210 265 206 0 40 chr6 81991553 81991629 -67525408 + G-rich Low_complexity Low_complexity 6 78 0 9 1210 496 243 19 0 chr6 81993132 81993235 -67523802 + ID_B1 SINE B4 112 216 -8 9 1210 254 279 34 34 chr6 81993360 81993449 -67523588 + MER20 DNA MER1_type 23 111 -108 9 1210 319 226 7 9 chr6 81994143 81994240 -67522797 + MIRm SINE MIR 31 129 -139 9 1210 254 347 40 20 chr6 81994390 81994490 -67522547 - MIR SINE MIR -141 121 20 9 1210 486 49 0 0 chr6 81995847 81995908 -67521129 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1210 218 174 0 42 chr6 81996425 81996473 -67520564 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 9 1210 207 0 0 0 chr6 81997468 81997491 -67519546 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1210 612 73 0 0 chr6 81997491 81997572 -67519465 + (GA)n Simple_repeat Simple_repeat 2 83 0 9 1210 947 174 21 43 chr6 81997706 81997892 -67519145 + ID_B1 SINE B4 7 188 -36 9 1210 675 78 0 0 chr6 81997892 81997995 -67519042 + (GA)n Simple_repeat Simple_repeat 2 104 0 9 1210 228 288 54 14 chr6 81999049 81999123 -67517914 - L2b LINE L2 -18 3357 3281 9 1210 241 286 76 67 chr6 81999525 81999630 -67517407 - MLT1A LTR MaLR -242 132 27 9 1210 522 225 264 6 chr6 82000721 82000895 -67516142 - ID_B1 SINE B4 -1 223 5 1 1210 318 290 70 1 chr6 82001035 82001169 -67515868 - MIR SINE MIR -107 161 15 2 1210 952 238 35 101 chr6 82001866 82002123 -67514914 + B4 SINE B4 50 289 -3 3 1210 396 0 0 0 chr6 82002150 82002194 -67514843 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1210 186 186 45 23 chr6 82002684 82002728 -67514309 - MER5A DNA MER1_type -129 60 16 5 1210 426 223 0 28 chr6 82003078 82003258 -67513779 + (TATG)n Simple_repeat Simple_repeat 4 178 0 6 1210 834 194 7 7 chr6 82003964 82004109 -67512928 + B1_Mur1 SINE Alu 3 147 -2 7 1210 231 23 22 65 chr6 82004231 82004277 -67512760 + (TGGGGG)n Simple_repeat Simple_repeat 2 45 0 8 1210 2189 140 28 8 chr6 82004277 82004637 -67512400 - MTC LTR MaLR -54 367 1 9 1210 516 200 9 37 chr6 82004724 82004833 -67512204 - ID_B1 SINE B4 -14 210 105 1 1210 25 0 0 0 chr6 82005098 82005123 -67511914 + AT_rich Low_complexity Low_complexity 1 25 0 1 1210 848 187 158 11 chr6 82005127 82005311 -67511726 - B3 SINE B2 -5 211 1 1 1210 403 291 67 0 chr6 82005478 82005612 -67511425 - B1F SINE Alu 0 149 7 1 1210 680 195 170 6 chr6 82005996 82006161 -67510876 - B3 SINE B2 0 216 25 1 1210 855 249 43 19 chr6 82006187 82006396 -67510641 - B3 SINE B2 0 216 3 1 1210 763 205 146 0 chr6 82006431 82006602 -67510435 - B3A SINE B2 -2 196 1 1 1210 447 260 112 125 chr6 82007098 82007419 -67509618 - Lx8 LINE L1 -2 7471 7155 1 1210 180 111 0 0 chr6 82007855 82007882 -67509155 + (TATATG)n Simple_repeat Simple_repeat 6 32 0 1 1210 792 245 48 72 chr6 82007895 82008102 -67508935 - B4A SINE B4 0 292 91 1 1210 447 255 75 0 chr6 82008118 82008224 -67508813 - B3 SINE B2 0 216 103 2 1210 595 257 46 26 chr6 82008416 82008568 -67508469 - ID_B1 SINE B4 -66 158 4 2 1210 1902 131 91 6 chr6 82008831 82009161 -67507876 - RLTR15 LTR ERVK 0 359 2 2 1210 830 237 35 5 chr6 82009199 82009398 -67507639 - ID_B1 SINE B4 -19 205 1 2 1210 399 282 167 14 chr6 82010324 82010540 -67506497 - L1MD LINE L1 -2381 3765 3517 2 1210 378 0 0 0 chr6 82010634 82010676 -67506361 + (TGG)n Simple_repeat Simple_repeat 3 44 0 2 1210 248 106 14 57 chr6 82010753 82010823 -67506214 + T-rich Low_complexity Low_complexity 4 70 0 2 1210 376 236 152 18 chr6 82010834 82010946 -67506091 - B1F SINE Alu -2 147 21 2 1210 186 321 101 29 chr6 82011044 82011182 -67505855 + MIR SINE MIR 22 169 -93 2 1210 1243 235 21 117 chr6 82012109 82012494 -67504543 + MTE2b LTR MaLR 1 348 -31 2 1210 497 0 91 0 chr6 82012515 82012603 -67504434 + (TTTTTG)n Simple_repeat Simple_repeat 2 97 0 3 1210 198 0 0 0 chr6 82013443 82013465 -67503572 + (TC)n Simple_repeat Simple_repeat 1 22 0 3 1210 549 30 0 0 chr6 82013465 82013532 -67503505 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1210 286 269 110 12 chr6 82013877 82014050 -67502987 - MT2A LTR ERVL 0 533 344 3 1210 851 304 74 30 chr6 82014067 82014430 -67502607 - MT2A LTR ERVL -119 414 36 3 1210 628 298 54 83 chr6 82014647 82014922 -67502115 + L1MA4A LINE L1 5528 5784 -519 3 1210 423 0 0 0 chr6 82014922 82014969 -67502068 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1210 628 311 50 88 chr6 82014969 82015219 -67501818 + L1MA4A LINE L1 5785 6027 -129 3 1210 968 265 166 27 chr6 82015229 82015581 -67501456 - MTD LTR MaLR -3 376 9 3 1210 405 202 47 28 chr6 82015707 82015814 -67501223 + PB1D7 SINE Alu 11 119 -1 3 1210 948 117 0 0 chr6 82015859 82016013 -67501024 + (TC)n Simple_repeat Simple_repeat 1 154 0 3 1210 899 113 15 22 chr6 82016013 82016149 -67500888 - B1_Mur3 SINE Alu -14 135 1 4 1210 26 30 0 0 chr6 82016160 82016193 -67500844 + AT_rich Low_complexity Low_complexity 1 33 0 4 1210 1321 20 0 0 chr6 82016200 82016347 -67500690 + B1_Mm SINE Alu 1 147 0 4 1210 619 173 273 31 chr6 82016357 82016518 -67500519 - B3 SINE B2 -13 203 4 4 1210 1066 179 54 10 chr6 82017052 82017255 -67499782 + B3 SINE B2 2 213 -3 4 1210 736 231 202 9 chr6 82017980 82018203 -67498834 + B4A SINE B4 1 266 -26 4 1210 671 314 22 6 chr6 82018767 82018969 -67498068 - MER20 DNA MER1_type -583 200 6 4 1210 329 333 10 0 chr6 82019150 82019252 -67497785 - MER5A1 DNA MER1_type -50 116 14 4 1210 679 286 0 72 chr6 82019330 82019511 -67497526 - B3A SINE B2 0 198 31 4 1210 192 342 13 38 chr6 82019528 82019607 -67497430 - L2c LINE L2 -343 3044 2968 4 1210 791 193 62 0 chr6 82020236 82020381 -67496656 - RMER15-int LTR ERVL -3851 1148 995 5 1210 270 0 0 0 chr6 82020429 82020459 -67496578 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 1210 252 0 0 0 chr6 82021562 82021590 -67495447 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1210 1112 298 12 40 chr6 82022152 82022474 -67494563 - MTE2a LTR MaLR 0 379 67 5 1210 302 236 11 43 chr6 82022490 82022583 -67494454 + Lx8 LINE L1 7383 7472 -1 5 1210 322 297 22 11 chr6 82022590 82022682 -67494355 - MTE2a LTR MaLR -286 93 1 5 1210 283 279 0 14 chr6 82022865 82022934 -67494103 - ID4 SINE ID -11 72 5 5 1210 207 0 0 0 chr6 82023425 82023448 -67493589 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 1210 830 70 118 118 chr6 82023448 82023609 -67493428 - B2_Mm2 SINE B2 -34 161 1 5 1210 624 290 7 0 chr6 82023657 82023795 -67493242 + RSINE1 SINE B4 6 144 -21 5 1210 786 188 16 0 chr6 82023928 82024056 -67492981 + B3 SINE B2 1 130 -86 5 1210 591 265 37 11 chr6 82024113 82024304 -67492733 + B3A SINE B2 3 198 0 6 1210 476 302 98 15 chr6 82024555 82024760 -67492277 + MLT2B3 LTR ERVL 1 222 -332 6 1210 980 242 104 104 chr6 82024771 82025135 -67491902 - MTE2a LTR MaLR 0 379 16 6 1210 354 23 0 0 chr6 82025537 82025580 -67491457 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1210 451 200 12 0 chr6 82026185 82026270 -67490767 - PB1D7 SINE Alu -25 95 10 6 1210 226 270 15 60 chr6 82026220 82026287 -67490750 - B4A SINE B4 -147 145 82 6 1210 310 350 23 47 chr6 82026323 82026452 -67490585 + L1M5 LINE L1 5254 5379 -745 6 1210 373 313 35 0 chr6 82026562 82026677 -67490360 + L1M5 LINE L1 5564 5682 -442 6 1210 837 264 30 64 chr6 82026964 82027259 -67489778 - B4 SINE B4 -5 287 3 6 1210 650 292 39 30 chr6 82027664 82027897 -67489140 + B4A SINE B4 37 271 -21 6 1210 2179 67 38 62 chr6 82028082 82028402 -67488635 + ORR1A2 LTR MaLR 8 319 -8 6 1210 189 280 72 65 chr6 82028638 82028791 -67488246 + L2a LINE L2 3086 3239 -187 7 1210 270 324 27 0 chr6 82028890 82029001 -67488036 - L1MC4a LINE L1 -1965 5917 5804 7 1210 1068 93 115 11 chr6 82029297 82029471 -67487566 + B2_Mm2 SINE B2 2 193 -2 7 1210 450 371 60 23 chr6 82029503 82029718 -67487319 - MER58A DNA MER1_type 0 224 2 7 1210 823 208 83 0 chr6 82029826 82030018 -67487019 - B3 SINE B2 -5 211 4 7 1210 501 127 0 0 chr6 82030163 82030242 -67486795 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 1210 205 195 0 0 chr6 82030377 82030418 -67486619 + (TATG)n Simple_repeat Simple_repeat 3 43 0 7 1210 861 300 51 22 chr6 82030430 82030703 -67486334 - B4A SINE B4 -10 282 2 7 1210 423 272 78 62 chr6 82031051 82031090 -67485947 - B2_Mm2 SINE B2 0 195 160 7 1210 461 71 14 0 chr6 82031090 82031160 -67485877 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 1210 839 177 14 14 chr6 82031160 82031312 -67485725 - B3A SINE B2 -36 159 1 7 1210 1005 209 5 42 chr6 82031541 82031756 -67485281 - B3 SINE B2 -5 211 5 8 1210 281 306 35 0 chr6 82032171 82032256 -67484781 - RSINE1 SINE B4 0 165 78 8 1210 362 324 133 33 chr6 82032363 82032574 -67484463 + ORR1E LTR MaLR 8 239 -120 8 1210 1364 207 28 97 chr6 82032622 82033012 -67484025 - MTE2a LTR MaLR 0 379 17 8 1210 201 173 19 37 chr6 82033096 82033150 -67483887 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 8 1210 1446 239 106 6 chr6 82033424 82033773 -67483264 - MTD LTR MaLR -14 405 22 8 1210 344 292 103 9 chr6 82034837 82034944 -67482093 + PB1 SINE Alu 8 124 -3 8 1210 240 86 0 0 chr6 82035208 82035243 -67481794 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 8 1210 267 263 50 0 chr6 82035243 82035342 -67481695 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 8 1210 191 146 0 24 chr6 82035400 82035442 -67481595 + CT-rich Low_complexity Low_complexity 4 44 0 8 1210 1013 272 59 18 chr6 82035528 82035869 -67481168 - ORR1E LTR MaLR -2 357 3 9 1210 548 272 69 27 chr6 82036036 82036441 -67480596 - RLTR15 LTR ERVK -18 341 1 9 1210 1413 154 45 4 chr6 82036561 82036796 -67480241 - RMER6C LTR ERVK 0 690 446 9 1210 487 183 46 77 chr6 82036796 82036926 -67480111 - B1_Mus2 SINE Alu -19 128 3 9 1210 1413 154 45 4 chr6 82036926 82036957 -67480080 - RMER6C LTR ERVK -245 445 414 9 1210 587 286 59 6 chr6 82037043 82037261 -67479776 + B4A SINE B4 48 279 -13 9 1210 507 17 0 0 chr6 82037261 82037321 -67479716 + (TATG)n Simple_repeat Simple_repeat 4 63 0 9 1210 364 297 26 35 chr6 82037652 82037767 -67479270 + PB1D10 SINE Alu 1 114 -3 9 1210 315 153 20 10 chr6 82037767 82037866 -67479171 + (CA)n Simple_repeat Simple_repeat 1 100 0 9 1210 564 128 15 8 chr6 82037902 82038036 -67479001 + (CA)n Simple_repeat Simple_repeat 2 136 0 9 1210 216 0 0 0 chr6 82038072 82038096 -67478941 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 1210 521 62 25 0 chr6 82038723 82038804 -67478233 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 9 1210 865 281 74 19 chr6 82038810 82039068 -67477969 - B4A SINE B4 -12 280 9 9 1210 799 170 169 6 chr6 82039331 82039514 -67477523 + MTD LTR MaLR 1 213 -206 1 1210 502 250 57 24 chr6 82039543 82039666 -67477371 - ID_B1 SINE B4 -19 205 79 1 1210 230 248 76 83 chr6 82039552 82039684 -67477353 + YREP_Mm Unknown Unknown 203 333 -1479 1 1210 766 326 71 67 chr6 82040045 82040109 -67476928 - MLT1F2 LTR MaLR 0 560 495 1 1210 662 255 41 31 chr6 82040109 82040303 -67476734 + B3A SINE B2 3 198 0 1 1210 766 326 71 67 chr6 82040303 82040399 -67476638 - MLT1F2 LTR MaLR -66 494 407 1 1210 410 94 16 0 chr6 82040399 82040463 -67476574 + (TTTAG)n Simple_repeat Simple_repeat 1 65 0 1 1210 766 326 71 67 chr6 82040463 82040764 -67476273 - MLT1F2 LTR MaLR -154 406 96 1 1210 376 329 194 16 chr6 82040764 82041011 -67476026 + B4 SINE B4 2 292 0 1 1210 232 224 0 0 chr6 82041011 82041060 -67475977 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1210 302 246 40 14 chr6 82041060 82041134 -67475903 + HAL1-3A_ME LINE L1 1974 2049 -809 1 1210 192 40 0 0 chr6 82041141 82041166 -67475871 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1 1210 485 305 26 0 chr6 82041359 82041513 -67475524 - RSINE1 SINE B4 0 165 8 1 1210 308 250 127 55 chr6 82041520 82041630 -67475407 - PB1D7 SINE Alu -1 119 2 1 1210 24 32 0 0 chr6 82042974 82043005 -67474032 + AT_rich Low_complexity Low_complexity 1 31 0 1 1210 724 126 34 0 chr6 82043453 82043572 -67473465 + URR1B DNA MER1_type 100 222 -3 1 1210 385 305 105 15 chr6 82044444 82044577 -67472460 - MLT1K LTR MaLR -65 530 386 1 1210 404 19 19 0 chr6 82044685 82044738 -67472299 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1210 333 0 0 0 chr6 82044738 82044774 -67472263 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1210 311 257 77 29 chr6 82045224 82045328 -67471709 + MLT1A1 LTR MaLR 21 129 -279 1 1210 367 355 32 7 chr6 82045658 82045842 -67471195 + MLT2B5 LTR ERVL 6 199 -355 1 1210 558 0 0 0 chr6 82046038 82046100 -67470937 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1210 1173 70 0 0 chr6 82046101 82046243 -67470794 - B1_Mm SINE Alu -4 143 2 1 1210 609 200 113 68 chr6 82047075 82047252 -67469785 - RMER5 LTR ERV1 0 534 350 1 1210 1824 220 36 22 chr6 82047252 82047665 -67469372 + MTD LTR MaLR 1 419 0 1 1210 945 239 70 114 chr6 82047665 82048010 -67469027 - RMER5 LTR ERV1 -186 348 20 1 1210 501 84 0 0 chr6 82048107 82048178 -67468859 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1210 1520 240 62 11 chr6 82048582 82048936 -67468101 - Lx8 LINE L1 -139 7334 6963 1 1210 438 20 0 0 chr6 82048978 82049029 -67468008 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1210 261 265 11 67 chr6 82049660 82049749 -67467288 + Lx8 LINE L1 7279 7362 -111 1 1210 1368 215 113 6 chr6 82049991 82050318 -67466719 + ORR1D2 LTR MaLR 1 362 -8 1 151 10549 23 3 17 chr6 82050324 82052559 -67464478 + L1Md_A LINE L1 232 2431 -3452 1 1211 12377 16 0 1 chr6 82052557 82053958 -67463079 + L1Md_A LINE L1 4170 5569 -314 1 1211 8508 36 1 0 chr6 82053962 82054957 -67462080 + L1Md_A LINE L1 5587 6582 0 1 1211 566 284 0 26 chr6 82055376 82055528 -67461509 + RSINE1 SINE B4 2 149 -16 1 1211 989 71 21 0 chr6 82055680 82055821 -67461216 + (GAAAA)n Simple_repeat Simple_repeat 2 145 0 1 1211 817 299 56 65 chr6 82056026 82056145 -67460892 + MLT1D LTR MaLR 77 189 -316 1 1211 1023 95 13 13 chr6 82056145 82056294 -67460743 + B1_Mur4 SINE Alu 1 149 -1 1 1211 817 299 56 65 chr6 82056294 82056606 -67460431 + MLT1D LTR MaLR 190 504 -1 1 1211 301 256 60 12 chr6 82056849 82056883 -67460154 + ID_B1 SINE B4 120 154 -70 1 1211 780 42 0 0 chr6 82056883 82056979 -67460058 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 1 1211 301 256 60 12 chr6 82056979 82057027 -67460010 + ID_B1 SINE B4 155 206 -18 1 1211 1273 215 39 26 chr6 82057075 82057409 -67459628 - ORR1D1 LTR MaLR 0 374 1 1 1211 715 209 148 11 chr6 82057463 82057652 -67459385 + B3 SINE B2 2 216 0 1 1211 31 44 0 0 chr6 82058284 82058329 -67458708 + AT_rich Low_complexity Low_complexity 1 45 0 1 1211 853 167 11 0 chr6 82058809 82058983 -67458054 + CT-rich Low_complexity Low_complexity 1 176 0 1 1211 991 273 3 65 chr6 82059044 82059338 -67457699 - B4A SINE B4 -15 277 2 1 1211 1282 231 65 20 chr6 82060031 82060385 -67456652 - ORR1D2 LTR MaLR 0 370 1 1 1211 411 73 0 0 chr6 82061080 82061135 -67455902 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1211 756 243 0 31 chr6 82061136 82061327 -67455710 - B3 SINE B2 -27 189 5 1 1211 893 260 9 22 chr6 82061338 82061562 -67455475 - B4 SINE B4 -71 221 1 1 1211 232 297 27 0 chr6 82061939 82062013 -67455024 - ORR1E LTR MaLR -10 369 294 1 1211 393 44 29 14 chr6 82062019 82062088 -67454949 + (TTTTG)n Simple_repeat Simple_repeat 2 71 0 1 1211 405 341 23 28 chr6 82062124 82062341 -67454696 - ORR1E LTR MaLR -123 236 21 1 1211 480 18 0 0 chr6 82062661 82062718 -67454319 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1211 378 196 0 0 chr6 82063297 82063399 -67453638 + (TG)n Simple_repeat Simple_repeat 1 102 0 1 1211 430 290 28 71 chr6 82063447 82063629 -67453408 - B4 SINE B4 -38 254 81 1 1211 357 24 0 0 chr6 82063654 82063696 -67453341 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1211 611 208 40 0 chr6 82063697 82063822 -67453215 - B3 SINE B2 -86 130 1 1 1211 366 204 11 22 chr6 82063823 82063913 -67453124 - B4A SINE B4 -202 90 2 1 1211 250 237 25 72 chr6 82064161 82064261 -67452776 + B1F SINE Alu 26 118 -2 1 1211 252 77 0 0 chr6 82064330 82064369 -67452668 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1211 214 317 0 0 chr6 82064541 82064601 -67452436 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1211 920 268 28 81 chr6 82064623 82064907 -67452130 - B4 SINE B4 -10 282 14 1 1211 267 295 183 15 chr6 82066337 82066468 -67450569 + MLT1A1 LTR MaLR 3 155 -253 1 1211 756 61 0 0 chr6 82066582 82066680 -67450357 + (CAGG)n Simple_repeat Simple_repeat 2 99 0 1 1211 452 204 68 0 chr6 82068859 82068962 -67448075 + B3A SINE B2 1 110 -88 1 1211 301 269 11 0 chr6 82068970 82069063 -67447974 + MTEb LTR MaLR 286 379 0 1 1211 402 278 45 32 chr6 82070139 82070295 -67446742 - B3A SINE B2 0 198 41 1 1211 252 219 0 0 chr6 82070347 82070429 -67446608 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1211 911 234 79 52 chr6 82070439 82070463 -67446574 - B4 SINE B4 0 292 269 1 1211 261 0 0 0 chr6 82070463 82070492 -67446545 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1211 911 234 79 52 chr6 82070492 82070719 -67446318 - B4 SINE B4 -24 268 34 1 1211 1434 194 76 83 chr6 82070879 82071324 -67445713 - RMER10A LTR ERVL 0 442 1 1 1211 557 301 126 29 chr6 82072019 82072296 -67444741 - RMER15 LTR ERVL -50 525 222 1 1211 1427 220 3 0 chr6 82072315 82072601 -67444436 + MTD LTR MaLR 1 287 -132 1 1211 199 308 0 0 chr6 82072763 82072828 -67444209 - L2 LINE L2 -1045 2374 2310 1 1211 828 275 71 15 chr6 82072909 82073175 -67443862 - B4A SINE B4 -2 290 10 1 1211 1376 52 0 18 chr6 82073618 82074620 -67442417 + (TCTA)n Simple_repeat Simple_repeat 1 983 0 1 1211 599 234 41 0 chr6 82075049 82075194 -67441843 - RSINE1 SINE B4 -6 159 9 1 1211 513 263 135 0 chr6 82075465 82075621 -67441416 + B4A SINE B4 41 217 -75 1 1211 520 106 11 11 chr6 82075626 82075721 -67441316 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 1211 1273 124 26 18 chr6 82075888 82076117 -67440920 + ORR1B2 LTR MaLR 137 367 0 1 1211 743 261 78 38 chr6 82076275 82076594 -67440443 + L1M2 LINE L1 5385 5716 -575 1 1211 575 275 11 33 chr6 82076661 82076845 -67440192 - B3A SINE B2 -18 180 1 1 1211 789 67 0 0 chr6 82077085 82077189 -67439848 + (TA)n Simple_repeat Simple_repeat 1 104 0 1 1211 338 0 24 0 chr6 82077189 82077230 -67439807 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1211 598 250 0 39 chr6 82077231 82077360 -67439677 - B1_Mur1 SINE Alu -23 126 3 1 1211 3568 44 35 2 chr6 82077368 82077803 -67439234 - L1Md_F2 LINE L1 -14 6568 6120 1 1211 374 187 53 0 chr6 82078379 82078454 -67438583 - ID4_ SINE ID -2 81 3 1 1211 787 157 0 16 chr6 82078570 82078699 -67438338 + B1_Mur2 SINE Alu 12 138 -11 1 1211 22 0 0 0 chr6 82079686 82079708 -67437329 + AT_rich Low_complexity Low_complexity 1 22 0 1 1211 567 78 0 0 chr6 82080273 82080350 -67436687 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1211 418 211 0 0 chr6 82080455 82080531 -67436506 - B1_Mur1 SINE Alu -7 142 67 1 1211 270 0 0 0 chr6 82080545 82080575 -67436462 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 1211 778 206 60 56 chr6 82080661 82080877 -67436160 - B4 SINE B4 -75 217 1 1 1211 706 311 48 0 chr6 82081231 82081501 -67435536 + B4A SINE B4 2 284 -8 1 1211 381 117 0 0 chr6 82081526 82081586 -67435451 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1211 279 0 0 0 chr6 82081615 82081646 -67435391 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 1211 738 190 155 34 chr6 82082453 82082660 -67434377 - B4 SINE B4 -58 234 3 1 1211 306 0 0 0 chr6 82082671 82082705 -67434332 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1211 1107 253 97 31 chr6 82082751 82083142 -67433895 - MTD LTR MaLR -2 417 1 1 1211 225 43 87 0 chr6 82085445 82085491 -67431546 + (TTTTTA)n Simple_repeat Simple_repeat 4 53 0 1 1211 355 193 0 35 chr6 82085685 82085771 -67431266 + MLT1A1 LTR MaLR 326 408 0 1 1211 311 228 25 0 chr6 82086514 82086590 -67430447 + B4A SINE B4 153 230 -62 1 1211 547 335 0 0 chr6 82086590 82086751 -67430286 + RSINE1 SINE B4 3 163 -2 1 1211 1521 50 10 20 chr6 82087612 82087815 -67429222 - L1Md_F3 LINE L1 0 6584 6384 1 1211 1242 298 85 47 chr6 82087974 82088573 -67428464 - Lx9 LINE L1 -140 7504 6883 1 1211 434 313 27 11 chr6 82088673 82088857 -67428180 + L1M5 LINE L1 5611 5797 -327 1 1211 700 286 95 62 chr6 82088868 82088958 -67428079 + B4A SINE B4 1 82 -210 1 1211 864 21 48 14 chr6 82088958 82089103 -67427934 + (CA)n Simple_repeat Simple_repeat 1 150 0 2 1211 700 286 95 62 chr6 82089103 82089254 -67427783 + B4A SINE B4 83 250 -42 1 1211 211 194 0 0 chr6 82089290 82089326 -67427711 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1211 1098 182 0 27 chr6 82089326 82089540 -67427497 + MTC LTR MaLR 1 209 -212 2 1211 1234 54 0 0 chr6 82089540 82089688 -67427349 + B1_Mus1 SINE Alu 1 148 0 2 1211 1098 252 7 207 chr6 82089688 82089719 -67427318 + MTC LTR MaLR 195 217 -190 2 1211 733 134 17 0 chr6 82089726 82089845 -67427192 + MTC LTR MaLR 196 316 -105 2 1211 188 135 0 26 chr6 82089887 82089925 -67427112 + G-rich Low_complexity Low_complexity 2 38 0 2 1211 258 300 47 112 chr6 82090059 82090228 -67426809 + MER20 DNA MER1_type 1 158 -61 2 1211 5621 213 106 18 chr6 82090359 82090388 -67426649 - Lx7 LINE L1 0 7696 7670 2 1211 2532 77 12 0 chr6 82090388 82090711 -67426326 - ORR1A2 LTR MaLR 0 327 1 2 1211 5621 213 106 18 chr6 82090711 82090885 -67426152 - Lx7 LINE L1 -27 7669 7429 2 1211 252 0 0 0 chr6 82090885 82090913 -67426124 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1211 5621 213 106 18 chr6 82090913 82092069 -67424968 - Lx7 LINE L1 -268 7428 6217 2 1211 194 194 28 56 chr6 82092400 82092542 -67424495 + CT-rich Low_complexity Low_complexity 4 141 0 2 1211 275 258 30 20 chr6 82092567 82092666 -67424371 + CT-rich Low_complexity Low_complexity 1 100 0 2 1211 477 0 0 0 chr6 82092680 82092733 -67424304 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 2 1211 570 67 0 0 chr6 82092733 82092807 -67424230 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 1211 1210 237 18 96 chr6 82092929 82093316 -67423721 + MTD LTR MaLR 1 357 -62 2 1211 1297 232 83 26 chr6 82093564 82093913 -67423124 + MTE2b LTR MaLR 4 372 -7 2 1211 2399 162 27 10 chr6 82093913 82094324 -67422713 + MTC LTR MaLR 1 418 -3 2 1211 423 0 0 0 chr6 82095821 82095868 -67421169 + (TC)n Simple_repeat Simple_repeat 1 47 0 2 1211 242 214 42 14 chr6 82095999 82096070 -67420967 - L1M6 LINE L1 -6411 85 13 2 1211 400 163 149 26 chr6 82097489 82097615 -67419422 - L1MC3 LINE L1 -497 7288 7164 2 1211 381 22 0 0 chr6 82097739 82097785 -67419252 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1211 246 132 38 50 chr6 82097795 82097875 -67419162 + (CAGAGA)n Simple_repeat Simple_repeat 4 82 0 2 1211 903 184 24 6 chr6 82097880 82098049 -67418988 - B3A SINE B2 -24 174 3 2 1211 335 275 69 0 chr6 82098049 82098180 -67418857 - L1MC3 LINE L1 -927 6858 6719 2 1211 536 0 16 0 chr6 82098254 82098318 -67418719 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 2 1211 3534 212 58 25 chr6 82098319 82099165 -67417872 + Lx9 LINE L1 6771 7644 0 2 1211 1587 52 0 0 chr6 82099347 82099539 -67417498 - B2_Mm1a SINE B2 0 193 2 2 1211 1022 244 151 24 chr6 82099634 82100046 -67416991 + Lx8 LINE L1 6993 7456 -17 2 1211 323 377 123 36 chr6 82101108 82101169 -67415868 - B4 SINE B4 -4 288 221 2 1211 261 0 0 0 chr6 82101169 82101198 -67415839 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1211 323 377 123 36 chr6 82101198 82101356 -67415681 - B4 SINE B4 -72 220 52 2 1211 2274 113 3 12 chr6 82101648 82101978 -67415059 - ORR1A2 LTR MaLR 0 327 1 2 1211 2362 171 103 8 chr6 82102166 82102673 -67414364 + RMER15 LTR ERVL 3 557 -18 2 1211 278 217 35 46 chr6 82102745 82102832 -67414205 + MTEb LTR MaLR 294 379 0 2 1211 521 266 66 71 chr6 82103771 82103969 -67413068 - B3A SINE B2 0 198 2 2 1211 447 184 0 0 chr6 82104321 82104408 -67412629 + T-rich Low_complexity Low_complexity 1 87 0 2 1211 705 275 23 23 chr6 82104538 82104713 -67412324 - B3A SINE B2 -22 176 2 2 1211 736 300 19 10 chr6 82104856 82105065 -67411972 - ID_B1 SINE B4 0 224 14 2 1211 839 48 32 0 chr6 82105713 82105838 -67411199 + (GA)n Simple_repeat Simple_repeat 2 130 0 2 1211 707 225 96 115 chr6 82106167 82106533 -67410504 - MTE2a LTR MaLR -2 377 19 2 1211 292 291 151 41 chr6 82106541 82106713 -67410324 + ORR1E LTR MaLR 1 191 -168 2 1211 375 265 40 81 chr6 82106957 82107105 -67409932 - RMER15 LTR ERVL -12 563 422 2 1211 1762 152 39 60 chr6 82108670 82109006 -67408031 + ORR1A4 LTR MaLR 1 329 0 2 1211 396 0 0 0 chr6 82109233 82109277 -67407760 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1211 962 227 155 28 chr6 82109386 82109555 -67407482 + MTD LTR MaLR 1 178 -241 2 1211 396 0 0 0 chr6 82109555 82109599 -67407438 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1211 962 227 155 28 chr6 82109599 82109751 -67407286 + MTD LTR MaLR 179 362 -57 2 1211 3289 53 5 0 chr6 82109751 82110149 -67406888 - MTB LTR MaLR 0 400 1 2 1211 268 213 82 0 chr6 82110163 82110224 -67406813 + ID4_ SINE ID 5 70 -13 2 1211 2478 93 94 9 chr6 82110251 82110696 -67406341 - RLTR44C LTR ERVK -19 483 1 2 1211 226 337 25 89 chr6 82110948 82111150 -67405887 - L3 LINE CR1 -622 3867 3679 2 1211 1315 233 106 0 chr6 82111325 82111656 -67405381 + ORR1D2 LTR MaLR 3 368 -2 2 1211 5287 141 38 43 chr6 82111721 82112734 -67404303 + L1Md_T LINE L1 199 1205 -5411 2 1211 37217 31 0 0 chr6 82112740 82117157 -67399880 + L1Md_T LINE L1 1170 5586 -297 2 1211 8220 53 0 0 chr6 82117157 82118153 -67398884 + L1Md_T LINE L1 5587 6582 0 2 1211 341 32 63 0 chr6 82118180 82118243 -67398794 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 2 1211 418 242 0 0 chr6 82118313 82118408 -67398629 - MTE2b LTR MaLR -4 375 281 2 1211 212 333 33 25 chr6 82118524 82118644 -67398393 - B3A SINE B2 0 198 78 2 1211 306 357 105 43 chr6 82118650 82118954 -67398083 - L1M3e LINE L1 -6566 464 142 2 1211 414 0 0 0 chr6 82118976 82119022 -67398015 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1211 571 307 7 0 chr6 82119347 82119487 -67397550 + RSINE1 SINE B4 3 143 -22 2 1211 494 274 193 25 chr6 82119786 82120029 -67397008 + B4A SINE B4 1 284 -8 2 1211 387 0 0 0 chr6 82120051 82120094 -67396943 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1211 353 315 101 25 chr6 82120524 82120762 -67396275 + L1MEe LINE L1 128 383 -4471 2 1211 565 258 90 12 chr6 82120795 82121053 -67395984 + MER54B LTR ERVL 27 334 -567 2 1211 662 282 5 27 chr6 82121075 82121261 -67395776 + B3A SINE B2 1 182 -16 2 1211 272 104 42 0 chr6 82121261 82121309 -67395728 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 2 1211 223 188 21 0 chr6 82121431 82121479 -67395558 + CT-rich Low_complexity Low_complexity 2 50 0 2 1211 520 261 158 0 chr6 82121782 82121947 -67395090 - ID_B1 SINE B4 -4 220 30 2 1211 1170 76 0 0 chr6 82122306 82122451 -67394586 + B1_Mus2 SINE Alu 1 145 -2 2 1211 246 70 34 34 chr6 82122459 82122518 -67394519 + (CAAAAA)n Simple_repeat Simple_repeat 3 61 0 2 1211 737 244 16 16 chr6 82122747 82122930 -67394107 + B3A SINE B2 1 183 -15 2 1211 414 0 0 0 chr6 82123032 82123078 -67393959 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1211 384 283 142 0 chr6 82123469 82123582 -67393455 - RSINE1 SINE B4 -28 137 9 2 1211 416 335 7 0 chr6 82123876 82124028 -67393009 + Lx9 LINE L1 7305 7457 -187 2 1211 189 0 0 0 chr6 82124028 82124049 -67392988 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1211 2986 166 8 2 chr6 82125397 82125928 -67391109 + L1_Mur2 LINE L1 3319 3852 -2025 2 1211 13031 91 12 5 chr6 82125970 82128527 -67388510 - L1_Mus1 LINE L1 0 6567 3989 2 1211 7589 79 2 4 chr6 82128525 82129507 -67387530 + L1_Mus2 LINE L1 5587 6566 0 2 1211 243 0 0 0 chr6 82129536 82129563 -67387474 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1211 6858 120 27 4 chr6 82129566 82130741 -67386296 + Lx2 LINE L1 5453 6645 -352 2 1211 1500 121 0 0 chr6 82130739 82130962 -67386075 + Lx2 LINE L1 6775 6997 0 2 1211 310 280 116 23 chr6 82131327 82131499 -67385538 - Kanga1 DNA Tc2 -1071 674 487 2 1211 455 254 35 0 chr6 82131514 82131628 -67385409 - PB1D7 SINE Alu -2 118 1 2 1211 308 256 51 0 chr6 82131822 82131900 -67385137 - Kanga1 DNA Tc2 -1541 204 123 2 1211 945 240 59 35 chr6 82132803 82133058 -67383979 + B4 SINE B4 2 262 -30 2 1211 429 20 0 0 chr6 82133058 82133108 -67383929 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1211 827 254 53 14 chr6 82133140 82133348 -67383689 - B3 SINE B2 0 216 1 2 1211 369 307 17 17 chr6 82133582 82133698 -67383339 + B4A SINE B4 4 119 -173 2 1211 556 269 94 92 chr6 82133724 82134003 -67383034 + RLTR12B LTR ERVK 47 327 -201 2 1211 4066 155 23 10 chr6 82134003 82134686 -67382351 + RLTR17 LTR ERVK 1 692 0 2 1211 556 269 94 92 chr6 82134686 82134876 -67382161 + RLTR12B LTR ERVK 328 517 -11 2 1211 379 295 188 35 chr6 82134901 82135045 -67381992 + B4A SINE B4 127 292 0 2 1211 234 0 0 0 chr6 82135090 82135116 -67381921 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2 1211 3135 178 85 8 chr6 82135266 82135910 -67381127 + Lx9 LINE L1 6950 7643 -1 2 1211 696 296 80 34 chr6 82136046 82136308 -67380729 + MLT1C LTR MaLR 40 313 -154 2 1211 261 288 122 61 chr6 82136281 82136429 -67380608 + MLT1C LTR MaLR 232 388 -2 2 1211 499 305 73 66 chr6 82136512 82136857 -67380180 + RLTR17 LTR ERVK 24 426 -266 2 1211 276 161 46 46 chr6 82137085 82137150 -67379887 + RLTR31_Mur LTR ERVK 489 553 0 2 1211 790 275 11 11 chr6 82137208 82137399 -67379638 - B3A SINE B2 0 198 8 2 1211 289 224 106 0 chr6 82138203 82138288 -67378749 - B4 SINE B4 -50 242 149 2 1211 628 241 47 105 chr6 82138830 82139020 -67378017 - B3 SINE B2 -35 181 3 2 1211 201 295 0 95 chr6 82139167 82139272 -67377765 + L2 LINE L2 2770 2864 -555 2 1211 495 33 0 0 chr6 82139655 82139716 -67377321 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1211 505 161 203 0 chr6 82139730 82139848 -67377189 - B1_Mur1 SINE Alu 0 149 8 2 1211 207 69 0 0 chr6 82139877 82139906 -67377131 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1211 28 61 0 0 chr6 82139913 82139962 -67377075 + AT_rich Low_complexity Low_complexity 1 49 0 2 1211 357 308 90 45 chr6 82140063 82140308 -67376729 - L1ME1 LINE L1 -319 5860 5605 2 1211 484 290 25 37 chr6 82140346 82140507 -67376530 - RSINE1 SINE B4 0 165 7 2 1211 560 291 7 13 chr6 82140638 82140788 -67376249 + B1_Mur1 SINE Alu 1 149 0 2 1211 4264 48 77 0 chr6 82140921 82141441 -67375596 - LTRIS2 LTR ERV1 0 564 5 2 1211 527 268 0 62 chr6 82141610 82141844 -67375193 + MTD LTR MaLR 22 353 -43 2 1211 248 26 0 71 chr6 82141854 82141896 -67375141 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1211 434 361 73 21 chr6 82142158 82142582 -67374455 - ERVL-E-int LTR ERVL -1160 4507 4062 3 1211 205 51 51 0 chr6 82143370 82143409 -67373628 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1211 447 191 105 0 chr6 82143582 82143687 -67373350 + B3 SINE B2 101 216 0 3 1211 30 27 0 0 chr6 82143788 82143825 -67373212 + AT_rich Low_complexity Low_complexity 1 37 0 3 1211 1099 299 36 20 chr6 82144009 82144367 -67372670 - MTEb LTR MaLR -12 367 4 3 1211 948 261 36 73 chr6 82144406 82144762 -67372275 + ORR1D2 LTR MaLR 24 366 -4 3 1211 249 281 54 80 chr6 82145237 82145349 -67371688 - MTEb LTR MaLR -269 110 2 3 1211 198 338 0 0 chr6 82145379 82145447 -67371590 - MER5A DNA MER1_type -38 151 84 3 1211 1130 255 186 6 chr6 82145454 82145809 -67371228 + MTD LTR MaLR 1 419 0 3 1211 315 0 0 0 chr6 82146206 82146241 -67370796 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1211 180 0 0 0 chr6 82146240 82146260 -67370777 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1211 422 314 27 22 chr6 82146260 82146514 -67370523 - L1M2 LINE L1 -510 5802 5548 3 1211 385 267 38 0 chr6 82146589 82146694 -67370343 - RMER15 LTR ERVL 0 575 467 3 1211 346 269 146 20 chr6 82146691 82146880 -67370157 - RMER15 LTR ERVL -271 304 27 3 1211 832 118 0 15 chr6 82146897 82147034 -67370003 - ORR1C1 LTR MaLR -2 376 242 3 1211 3355 5 0 0 chr6 82147370 82147742 -67369295 - L1Md_T LINE L1 0 6582 6211 3 1211 332 218 172 0 chr6 82147775 82147862 -67369175 - MTEb LTR MaLR -17 362 261 3 1211 7951 26 0 0 chr6 82147862 82148791 -67368246 + L1_Mm LINE L1 3820 4748 -1135 3 1211 816 266 48 17 chr6 82149016 82149367 -67367670 - ORR1E LTR MaLR -20 359 1 3 1211 324 208 15 36 chr6 82151069 82151170 -67365867 + MTD LTR MaLR 280 404 -15 3 1211 359 222 28 1 chr6 82151173 82151260 -67365777 + MTEa LTR MaLR 290 379 0 3 1211 573 124 0 0 chr6 82151297 82151394 -67365643 + (TGAA)n Simple_repeat Simple_repeat 4 100 0 3 1211 222 241 88 12 chr6 82152192 82152272 -67364765 + B4A SINE B4 68 153 -139 3 1211 222 329 0 23 chr6 82152346 82152433 -67364604 + RSINE1 SINE B4 78 162 -3 3 1211 465 197 173 0 chr6 82152677 82152804 -67364233 - B1_Mur2 SINE Alu 0 149 1 3 1211 25 31 0 0 chr6 82153149 82153181 -67363856 + AT_rich Low_complexity Low_complexity 1 32 0 3 1211 1131 231 73 19 chr6 82153304 82153618 -67363419 - MTD LTR MaLR -81 338 8 3 1211 519 17 0 0 chr6 82153963 82154023 -67363014 + (TAA)n Simple_repeat Simple_repeat 2 61 0 3 1211 261 351 45 38 chr6 82154748 82154881 -67362156 + B1F SINE Alu 1 134 -15 3 1211 1060 217 194 16 chr6 82155928 82156247 -67360790 + MTEa LTR MaLR 4 379 0 3 1211 200 170 43 0 chr6 82156635 82156682 -67360355 + (CATA)n Simple_repeat Simple_repeat 4 52 0 3 1211 377 81 0 16 chr6 82156754 82156817 -67360220 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1211 252 0 0 0 chr6 82156817 82156845 -67360192 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1211 375 290 243 0 chr6 82156974 82157143 -67359894 + ID_B1 SINE B4 2 211 -13 3 1211 1898 241 176 28 chr6 82157147 82157640 -67359397 + Lx8 LINE L1 6332 6844 -629 3 1211 252 0 0 0 chr6 82157640 82157668 -67359369 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 3 1211 1898 241 176 28 chr6 82157668 82157862 -67359175 + Lx8 LINE L1 6845 7120 -353 3 1211 278 253 0 12 chr6 82157926 82158006 -67359031 + Lx8 LINE L1 7394 7472 -1 3 1211 462 264 150 117 chr6 82158296 82158536 -67358501 + B4 SINE B4 11 258 -34 3 1211 2252 149 43 0 chr6 82158537 82158912 -67358125 - ORR1B1 LTR MaLR 0 394 4 3 1211 1209 68 0 0 chr6 82159050 82159197 -67357840 - B1_Mus1 SINE Alu 0 148 2 3 1211 306 125 0 0 chr6 82159615 82159663 -67357374 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 3 1211 358 355 71 40 chr6 82159743 82159969 -67357068 - B4A SINE B4 -59 233 1 3 1211 3617 184 41 91 chr6 82160010 82160930 -67356107 - RMER19B LTR ERVK -28 874 1 3 1211 237 254 29 15 chr6 82161355 82161423 -67355614 + Charlie8 DNA MER1_type 2360 2428 0 3 1211 397 306 45 103 chr6 82162021 82162312 -67354725 + B4 SINE B4 2 275 -17 3 1211 399 130 0 0 chr6 82162355 82162432 -67354605 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1211 6794 47 1 19 chr6 82162610 82163470 -67353567 + L1Md_Gf LINE L1 298 1142 -5380 3 1211 16001 21 0 0 chr6 82165999 82167820 -67349217 + L1Md_T LINE L1 3766 5586 -297 3 1211 8259 34 23 0 chr6 82167820 82168794 -67348243 + L1Md_T LINE L1 5587 6582 0 3 1211 667 289 24 9 chr6 82168840 82169053 -67347984 + MER89 LTR ERV1 331 546 -13 3 1211 1308 245 105 3 chr6 82169394 82169738 -67347299 + MTE2b LTR MaLR 1 379 0 3 1211 583 216 182 10 chr6 82169982 82170174 -67346863 - MTE2b LTR MaLR -1 378 154 3 1211 302 216 81 0 chr6 82170209 82170283 -67346754 + B4A SINE B4 147 226 -66 3 1211 486 267 35 0 chr6 82170295 82170411 -67346626 + RSINE1 SINE B4 25 144 -21 3 1211 348 24 0 0 chr6 82170418 82170459 -67346578 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1211 880 173 0 30 chr6 82170499 82170666 -67346371 + L1VL1 LINE L1 29 190 -6232 3 1211 34217 66 7 6 chr6 82170667 82175515 -67341522 + L1Md_F3 LINE L1 735 5586 -297 3 1211 7941 58 4 2 chr6 82175516 82176508 -67340529 + L1Md_F3 LINE L1 5588 6581 -3 3 1211 280 215 46 0 chr6 82176511 82176576 -67340461 + B4A SINE B4 217 284 -8 3 1211 387 0 0 0 chr6 82176686 82176729 -67340308 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1211 252 0 0 0 chr6 82177633 82177661 -67339376 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1211 308 202 19 28 chr6 82177668 82177775 -67339262 + GA-rich Low_complexity Low_complexity 4 109 0 3 1211 426 274 98 41 chr6 82177794 82177988 -67339049 - Lx9 LINE L1 -402 7242 7038 3 1211 2232 43 27 3 chr6 82178267 82178568 -67338469 - IAPLTR2b LTR ERVK -19 308 1 3 1211 3048 146 79 19 chr6 82178798 82179330 -67337707 + RLTR12A LTR ERVK 1 564 -4 3 1211 847 221 16 66 chr6 82179355 82179633 -67337404 - RLTR11B LTR ERVK -32 496 246 3 1211 534 186 0 0 chr6 82179638 82179687 -67337350 + polypyrimidine Low_complexity Low_complexity 70 118 0 3 1211 1434 45 0 0 chr6 82179687 82179865 -67337172 + (TTC)n Simple_repeat Simple_repeat 3 180 0 3 1211 534 186 0 0 chr6 82179865 82179928 -67337109 + polypyrimidine Low_complexity Low_complexity 7 69 0 3 1211 1582 120 13 0 chr6 82179930 82180155 -67336882 - L1_Mus1 LINE L1 -23 6544 6317 3 1211 3217 80 10 0 chr6 82180149 82180564 -67336473 + L1_Mus1 LINE L1 5898 6316 -251 3 1211 534 103 0 0 chr6 82180568 82180646 -67336391 + (TTC)n Simple_repeat Simple_repeat 1 78 0 3 1211 725 240 29 80 chr6 82180646 82180922 -67336115 - RLTR11B LTR ERVK -191 262 1 3 1211 262 197 0 38 chr6 82181332 82181411 -67335626 + T-rich Low_complexity Low_complexity 5 80 0 3 1211 677 207 59 0 chr6 82181439 82181574 -67335463 - B1_Mur4 SINE Alu -6 144 2 3 1211 468 0 0 0 chr6 82181578 82181630 -67335407 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1211 360 0 0 0 chr6 82181629 82181669 -67335368 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1211 594 247 175 0 chr6 82181669 82181823 -67335214 - B3A SINE B2 -17 181 1 3 1211 240 143 0 0 chr6 82181943 82181985 -67335052 + (GGA)n Simple_repeat Simple_repeat 3 44 0 3 151 1265 257 77 16 chr6 82182028 82182407 -67334630 + MTD LTR MaLR 18 419 0 3 1212 249 98 0 0 chr6 82182561 82182602 -67334435 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1212 423 0 0 0 chr6 82182607 82182654 -67334383 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1212 867 240 48 143 chr6 82182783 82183202 -67333835 - MTE2a LTR MaLR 0 379 1 3 1212 845 254 117 14 chr6 82183539 82183855 -67333182 + ORR1E LTR MaLR 4 379 0 3 1212 703 173 96 56 chr6 82183913 82184091 -67332946 + B2_Mm2 SINE B2 2 186 -9 3 1212 249 333 0 12 chr6 82184925 82185010 -67332027 + PB1D10 SINE Alu 1 84 -33 3 1212 25 83 0 0 chr6 82185011 82185071 -67331966 + AT_rich Low_complexity Low_complexity 1 60 0 3 1212 425 288 75 6 chr6 82185441 82185602 -67331435 + MARNA DNA Mariner 241 412 -174 3 1212 219 69 0 0 chr6 82186467 82186496 -67330541 + (TTG)n Simple_repeat Simple_repeat 1 29 0 3 1212 447 310 71 0 chr6 82186497 82186652 -67330385 + MT2A LTR ERVL 244 409 -124 3 1212 227 289 40 0 chr6 82186662 82186738 -67330299 + MT2A LTR ERVL 347 425 -108 3 1212 435 234 0 0 chr6 82186864 82186988 -67330049 + (TA)n Simple_repeat Simple_repeat 2 125 0 3 1212 220 244 12 37 chr6 82188753 82188834 -67328203 + B4 SINE B4 1 79 -213 3 1212 723 48 15 53 chr6 82188895 82189028 -67328009 + (TAGA)n Simple_repeat Simple_repeat 2 129 0 3 1212 521 276 60 0 chr6 82189575 82189709 -67327328 - B1F2 SINE Alu -6 143 2 3 1212 595 263 19 81 chr6 82189937 82190148 -67326889 - B3A SINE B2 0 198 1 3 1212 256 42 0 77 chr6 82191405 82191457 -67325580 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 3 1212 237 196 0 0 chr6 82192736 82192792 -67324245 + GA-rich Low_complexity Low_complexity 2 57 0 3 1212 264 30 0 0 chr6 82193145 82193178 -67323859 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1212 291 203 0 0 chr6 82193773 82193842 -67323195 + GA-rich Low_complexity Low_complexity 1 69 0 3 1212 278 308 29 44 chr6 82193870 82194006 -67323031 - ORR1E LTR MaLR -220 139 6 3 1212 245 331 39 16 chr6 82194010 82194139 -67322898 - Arthur1 DNA Tip100 -3297 650 519 3 1212 1427 181 118 19 chr6 82194144 82194336 -67322701 - RMER17C LTR ERVK 0 410 188 3 1212 207 0 0 0 chr6 82194336 82194359 -67322678 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 3 1212 1427 181 118 19 chr6 82194359 82194538 -67322499 - RMER17C LTR ERVK -223 187 3 3 1212 10884 113 40 65 chr6 82194543 82194890 -67322147 - RMER17C-int LTR ERVK 0 3238 2900 3 1212 207 0 0 0 chr6 82194890 82194913 -67322124 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1212 10884 113 40 65 chr6 82194913 82196412 -67320625 - RMER17C-int LTR ERVK -339 2899 1441 3 1212 372 274 19 58 chr6 82196660 82196815 -67320222 - RMER17C-int LTR ERVK -2277 961 813 3 1212 2255 187 108 58 chr6 82196844 82197418 -67319619 - RMER17C-int LTR ERVK -2635 603 1 3 1212 1657 175 36 55 chr6 82197418 82197836 -67319201 - RMER17C LTR ERVK 0 410 1 3 1212 2266 45 64 3 chr6 82197867 82198179 -67318858 + ORR1A1 LTR MaLR 16 346 0 3 1212 11335 77 6 79 chr6 82198179 82200113 -67316924 + ORR1A1-int LTR MaLR 1 1792 0 3 1212 2646 31 85 0 chr6 82200113 82200432 -67316605 + ORR1A1 LTR MaLR 1 346 0 3 1212 574 325 161 0 chr6 82200600 82200917 -67316120 + MTE2b LTR MaLR 1 368 -11 4 1212 872 253 25 54 chr6 82201697 82201775 -67315262 + B4A SINE B4 2 77 -215 4 1212 1046 232 142 47 chr6 82201775 82202155 -67314882 - MTD LTR MaLR 0 419 4 4 1212 872 253 25 54 chr6 82202155 82202356 -67314681 + B4A SINE B4 78 273 -19 4 1212 277 128 62 21 chr6 82202423 82202519 -67314518 + GA-rich Low_complexity Low_complexity 4 103 0 4 1212 229 175 29 19 chr6 82202495 82202600 -67314437 + (CAGA)n Simple_repeat Simple_repeat 2 107 0 4 1212 1037 109 11 0 chr6 82202622 82202797 -67314240 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 4 1212 781 84 0 16 chr6 82202802 82202923 -67314114 + (GGAA)n Simple_repeat Simple_repeat 4 122 0 4 1212 612 40 0 0 chr6 82203981 82204056 -67312981 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1212 676 245 195 26 chr6 82204068 82204294 -67312743 - B4 SINE B4 -27 265 2 4 1212 23 0 0 0 chr6 82204425 82204448 -67312589 + AT_rich Low_complexity Low_complexity 1 23 0 4 1212 331 247 22 0 chr6 82205440 82205529 -67311508 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 4 1212 752 171 6 0 chr6 82205529 82205693 -67311344 + (CA)n Simple_repeat Simple_repeat 2 166 0 4 1212 22 0 0 0 chr6 82205932 82205954 -67311083 + AT_rich Low_complexity Low_complexity 1 22 0 4 1212 38823 29 0 0 chr6 82206060 82212695 -67304342 - L1Md_T LINE L1 0 6585 1 4 1212 333 47 0 0 chr6 82212904 82212947 -67304090 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1212 262 278 33 11 chr6 82212976 82213067 -67303970 - RSINE1 SINE B4 -1 164 72 4 1212 180 163 0 0 chr6 82213236 82213279 -67303758 + CT-rich Low_complexity Low_complexity 2 44 0 4 1212 712 200 0 8 chr6 82213279 82213410 -67303627 - RSINE1 SINE B4 -33 132 3 4 1212 229 345 0 33 chr6 82213410 82213496 -67303541 - B4 SINE B4 -203 89 7 4 1212 198 136 0 0 chr6 82213531 82213575 -67303462 + (CACCAT)n Simple_repeat Simple_repeat 1 44 0 4 1212 603 285 129 21 chr6 82213584 82213824 -67303213 + MT2A LTR ERVL 268 533 0 4 1212 997 249 102 31 chr6 82215205 82215255 -67301782 - MTE2b LTR MaLR -1 378 316 4 1212 414 0 0 0 chr6 82215255 82215301 -67301736 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 4 1212 997 249 102 31 chr6 82215301 82215603 -67301434 - MTE2b LTR MaLR -64 315 1 4 1212 586 250 130 67 chr6 82215623 82215923 -67301114 - ORR1E LTR MaLR -39 320 2 4 1212 312 271 10 30 chr6 82216221 82216320 -67300717 + RSINE1 SINE B4 3 99 -66 4 1212 7553 63 2 10 chr6 82216886 82217846 -67299191 - L1Md_F2 LINE L1 0 6582 5631 4 1212 383 173 0 12 chr6 82217875 82217957 -67299080 + C-rich Low_complexity Low_complexity 6 86 0 4 1212 201 143 0 0 chr6 82218763 82218798 -67298239 + (TCTG)n Simple_repeat Simple_repeat 3 37 0 4 1212 1377 175 0 13 chr6 82218856 82219082 -67297955 + URR1B DNA MER1_type 1 223 -2 4 1212 24 0 0 0 chr6 82219322 82219346 -67297691 + AT_rich Low_complexity Low_complexity 1 24 0 4 1212 1325 34 0 25 chr6 82219513 82219758 -67297279 + (GGGAGA)n Simple_repeat Simple_repeat 1 238 0 4 1212 256 213 0 0 chr6 82219759 82219806 -67297231 - RSINE1 SINE B4 -26 139 93 4 1212 237 340 19 19 chr6 82219973 82220135 -67296902 + (TATATG)n Simple_repeat Simple_repeat 5 166 0 4 1212 820 200 78 0 chr6 82220185 82220239 -67296798 - B3 SINE B2 0 216 163 4 1212 369 0 0 0 chr6 82220239 82220280 -67296757 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1212 820 200 78 0 chr6 82220280 82220405 -67296632 - B3 SINE B2 -54 162 24 4 1212 956 272 28 16 chr6 82221319 82221569 -67295468 + B4 SINE B4 28 280 -12 4 1212 395 79 32 0 chr6 82221580 82221643 -67295394 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 4 1212 393 285 93 54 chr6 82221895 82222090 -67294947 - HAL1 LINE L1 -661 1846 1639 4 1212 315 0 0 0 chr6 82222090 82222125 -67294912 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 1212 393 285 93 54 chr6 82222125 82222207 -67294830 - HAL1 LINE L1 -869 1638 1559 4 1212 344 350 127 17 chr6 82222241 82222364 -67294673 - Lx9 LINE L1 0 7473 7333 4 1212 447 19 0 0 chr6 82222364 82222416 -67294621 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1212 439 321 102 8 chr6 82222416 82222701 -67294336 - Lx9 LINE L1 -196 7448 7146 4 1212 244 182 0 0 chr6 82222756 82222800 -67294237 - tRNA-Ile-ATA tRNA tRNA -31 46 3 4 1212 544 91 23 0 chr6 82222941 82223029 -67294008 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 4 1212 2225 49 0 0 chr6 82223599 82223886 -67293151 + ORR1A1 LTR MaLR 56 342 -4 4 1212 732 191 84 13 chr6 82223893 82224047 -67292990 - B3A SINE B2 0 198 34 4 1212 499 204 61 9 chr6 82224205 82224319 -67292718 + ID_B1 SINE B4 27 146 -78 4 1212 274 256 24 40 chr6 82224324 82224450 -67292587 + BC1_Mm scRNA scRNA 1 124 -28 4 1212 188 323 73 24 chr6 82224886 82225051 -67291986 - L3 LINE CR1 -502 3987 3815 4 1212 504 244 8 0 chr6 82225607 82225726 -67291311 + PB1D9 SINE Alu 1 120 0 4 1212 566 217 0 16 chr6 82225913 82226035 -67291002 + B3A SINE B2 1 120 -78 4 1212 438 308 98 0 chr6 82226124 82226267 -67290770 + B3A SINE B2 1 157 -41 4 1212 483 48 0 0 chr6 82226294 82226356 -67290681 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1212 457 318 93 23 chr6 82226488 82226704 -67290333 + MER31A LTR ERV1 244 474 -11 4 1212 555 194 348 0 chr6 82226711 82226866 -67290171 - B3 SINE B2 -6 210 2 4 1212 836 292 72 22 chr6 82227448 82227809 -67289228 + MLT1B LTR MaLR 2 380 -10 4 1212 549 44 0 0 chr6 82227811 82227879 -67289158 + (TCCC)n Simple_repeat Simple_repeat 4 71 0 4 1212 450 194 81 27 chr6 82227893 82228004 -67289033 - B1F SINE Alu -13 136 20 4 1212 399 333 67 0 chr6 82228280 82228430 -67288607 + MLT1D LTR MaLR 8 167 -338 4 1212 935 256 38 60 chr6 82228524 82228899 -67288138 - MTE2a LTR MaLR -43 376 3 4 1212 423 0 0 0 chr6 82229014 82229061 -67287976 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 4 1212 372 276 87 27 chr6 82229435 82229584 -67287453 - MLT1A1 LTR MaLR -4 404 247 4 1212 3136 47 36 3 chr6 82229831 82230216 -67286821 - MTB LTR MaLR -2 398 1 4 1212 253 350 13 60 chr6 82230240 82230328 -67286709 + L2a LINE L2 3034 3118 -308 4 1212 443 242 130 50 chr6 82230328 82230528 -67286509 + B3 SINE B2 1 216 0 4 1212 253 350 13 60 chr6 82230528 82230588 -67286449 + L2a LINE L2 3119 3175 -251 4 1212 486 267 15 22 chr6 82230606 82230740 -67286297 + RSINE1 SINE B4 11 143 -22 4 1212 441 0 0 0 chr6 82230745 82230794 -67286243 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1212 215 344 83 0 chr6 82231877 82231973 -67285064 + MIRb SINE MIR 119 222 -46 4 1212 1336 203 142 5 chr6 82232090 82232457 -67284580 + MTD LTR MaLR 3 419 0 4 1212 384 256 109 57 chr6 82232458 82232706 -67284331 + L1MC4 LINE L1 7448 7699 -183 4 1212 468 51 0 0 chr6 82232712 82232771 -67284266 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1212 644 172 58 29 chr6 82232773 82232911 -67284126 - B1F SINE Alu -7 142 1 4 1212 424 93 13 13 chr6 82233083 82233159 -67283878 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 1212 248 314 14 0 chr6 82233280 82233350 -67283687 - tRNA-Ala-GCG tRNA tRNA -2 73 3 4 1212 474 244 33 12 chr6 82233942 82234168 -67282869 + MTE2b LTR MaLR 88 364 -15 4 1212 191 36 0 35 chr6 82234361 82234390 -67282647 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 1212 594 71 0 0 chr6 82234935 82235019 -67282018 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 1212 212 125 50 0 chr6 82235019 82235059 -67281978 + (CAGG)n Simple_repeat Simple_repeat 2 43 0 4 1212 286 295 97 67 chr6 82235485 82235754 -67281283 - L1MEf LINE L1 -4810 2292 2016 4 1212 625 216 150 0 chr6 82235848 82236015 -67281022 - B3 SINE B2 0 216 25 4 1212 378 0 0 0 chr6 82236019 82236061 -67280976 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1212 438 20 0 0 chr6 82236061 82236111 -67280926 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1212 626 257 50 0 chr6 82236135 82236275 -67280762 - B3A SINE B2 -48 150 4 4 1212 239 311 49 87 chr6 82236364 82236480 -67280557 - L1MEf LINE L1 -5654 1680 1566 4 1212 3984 87 77 19 chr6 82236480 82237076 -67279961 - Lx LINE L1 0 6654 6024 4 1212 239 311 49 87 chr6 82237076 82237304 -67279733 - L1MEf LINE L1 -5769 1565 1349 4 1212 594 319 66 52 chr6 82237343 82237707 -67279330 + MT2A LTR ERVL 4 372 -161 4 1212 22 35 0 0 chr6 82237789 82237818 -67279219 + AT_rich Low_complexity Low_complexity 1 29 0 4 1212 7716 68 4 0 chr6 82237824 82238783 -67278254 - L1_Mus1 LINE L1 -2 6565 5603 4 1212 2338 97 6 0 chr6 82238780 82239100 -67277937 + L1_Mus1 LINE L1 5244 5565 -318 4 1212 426 39 0 0 chr6 82239167 82239219 -67277818 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1212 608 228 181 55 chr6 82239430 82239778 -67277259 + RLTR20C LTR ERVK 1 381 -197 4 1212 6702 70 2 1 chr6 82239778 82241193 -67275844 + L1Md_F LINE L1 383 1799 -4084 4 1212 4394 40 6 8 chr6 82241194 82241727 -67275310 + L1Md_F2 LINE L1 6050 6581 -1 4 1212 255 270 15 31 chr6 82241729 82241794 -67275243 + RLTR20C LTR ERVK 475 538 -40 4 1212 2289 174 0 3 chr6 82242578 82242969 -67274068 - MTC LTR MaLR 0 421 32 4 1212 601 245 53 97 chr6 82243076 82243302 -67273735 - B3A SINE B2 0 216 1 4 1212 653 228 0 23 chr6 82243365 82243495 -67273542 - RSINE1 SINE B4 -35 130 4 4 1212 231 290 21 41 chr6 82243659 82243756 -67273281 + MLT1C LTR MaLR 294 388 -79 4 1212 718 256 136 54 chr6 82244180 82244511 -67272526 - MTEb LTR MaLR 0 379 22 4 1212 254 273 30 0 chr6 82244657 82244723 -67272314 + MLT1I LTR MaLR 46 113 -298 4 1212 547 178 55 27 chr6 82244781 82244891 -67272146 - PB1D10 SINE Alu 0 117 5 4 1212 757 238 104 18 chr6 82245634 82245876 -67271161 - ORR1E LTR MaLR -87 292 1 4 1212 1093 235 73 6 chr6 82245992 82246305 -67270732 - ORR1D2 LTR MaLR -34 336 3 4 1212 465 306 55 30 chr6 82247492 82247691 -67269346 - MER20 DNA MER1_type 0 219 16 4 1212 526 248 24 8 chr6 82247721 82247847 -67269190 + B4A SINE B4 142 269 -23 5 1212 498 75 0 0 chr6 82247847 82247914 -67269123 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1212 240 163 0 0 chr6 82247972 82248015 -67269022 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5 1212 236 229 7 132 chr6 82248356 82248492 -67268545 - Lx8 LINE L1 0 7473 7355 5 1212 285 338 0 0 chr6 82248585 82248662 -67268375 - Lx8 LINE L1 -200 7273 7197 5 1212 1470 75 0 0 chr6 82248662 82248862 -67268175 - ORR1A3 LTR MaLR 0 326 127 5 1212 245 29 0 29 chr6 82249242 82249277 -67267760 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1212 482 234 45 71 chr6 82249413 82249442 -67267595 - B2_Mm2 SINE B2 -1 194 171 5 1212 378 0 0 0 chr6 82249442 82249484 -67267553 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1212 906 187 54 1 chr6 82249484 82249652 -67267385 - B3A SINE B2 -22 176 2 5 1212 399 284 71 89 chr6 82249725 82249949 -67267088 - MTEa LTR MaLR -159 220 1 5 1212 760 150 23 23 chr6 82250311 82250482 -67266555 - L1_Mus4 LINE L1 0 6636 6466 5 1212 2331 109 9 0 chr6 82250482 82250821 -67266216 + L1_Mur2 LINE L1 4356 4697 -1180 5 1212 1337 104 0 10 chr6 82250819 82251013 -67266024 - L1_Mm LINE L1 -992 4891 4700 5 1212 2383 136 0 20 chr6 82251014 82251405 -67265632 - L1_Mur2 LINE L1 -1530 4347 3965 5 1212 11502 85 16 14 chr6 82251403 82251930 -67265107 - L1VL4 LINE L1 -1028 2531 2012 5 1212 5479 105 39 59 chr6 82251930 82252849 -67264188 + RLTR13D6 LTR ERVK 2 902 0 5 1212 11502 124 28 18 chr6 82252849 82254657 -67262380 - L1VL4 LINE L1 -1548 2011 190 5 1212 1616 160 119 23 chr6 82254735 82254778 -67262259 - ORR1B1 LTR MaLR -8 386 344 5 1212 711 90 0 0 chr6 82254778 82254878 -67262159 + (TA)n Simple_repeat Simple_repeat 1 100 0 5 1212 1616 160 119 23 chr6 82254878 82255186 -67261851 - ORR1B1 LTR MaLR -51 343 1 5 1212 3186 162 90 3 chr6 82255186 82255828 -67261209 - ORR1B1-int LTR MaLR 0 1509 812 5 1212 384 115 16 0 chr6 82255936 82255997 -67261040 - ORR1B1 LTR MaLR -318 76 15 5 1212 225 306 18 9 chr6 82256018 82256130 -67260907 - PB1D10 SINE Alu 0 117 5 5 1212 683 246 91 101 chr6 82256513 82256911 -67260126 - L1MC5 LINE L1 -929 7032 6639 5 1212 249 159 95 0 chr6 82257300 82257363 -67259674 - ID4 SINE ID 0 83 15 5 1212 654 341 65 43 chr6 82258291 82258570 -67258467 + B4A SINE B4 7 291 -1 5 1212 449 223 43 26 chr6 82258609 82258724 -67258313 + PB1D10 SINE Alu 1 117 0 5 1212 304 293 122 47 chr6 82258752 82259006 -67258031 + HAL1 LINE L1 1487 1759 -748 5 1212 1111 252 107 24 chr6 82259011 82259293 -67257744 - MTD LTR MaLR -14 405 93 5 1212 369 0 0 0 chr6 82259293 82259334 -67257703 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1212 1111 252 107 24 chr6 82259334 82259425 -67257612 - MTD LTR MaLR -327 92 1 5 1212 2003 162 156 3 chr6 82259746 82260111 -67256926 - MTC LTR MaLR 0 421 1 5 1212 3239 192 101 30 chr6 82260111 82260915 -67256122 - MTC-int LTR MaLR 0 1258 398 5 1212 383 24 0 0 chr6 82260915 82260957 -67256080 - L1_Mm LINE L1 -323 5560 5519 5 1212 1918 94 29 0 chr6 82260959 82261234 -67255803 + L1_Mm LINE L1 5078 5360 -523 5 1212 1102 216 96 10 chr6 82261234 82261548 -67255489 + RCHARR1 DNA MER1_type 559 899 -75 5 1212 1762 212 26 35 chr6 82261574 82261999 -67255038 - MTC LTR MaLR 0 421 1 5 1212 5843 175 47 28 chr6 82262001 82263234 -67253803 - MTC-int LTR MaLR -2 1256 1 5 1212 2268 145 25 12 chr6 82263235 82263640 -67253397 - MTC LTR MaLR -7 414 5 5 1212 687 267 14 58 chr6 82264507 82264714 -67252323 - B3A SINE B2 0 198 1 5 1212 639 296 237 3 chr6 82265009 82265461 -67251576 + L1_Mur3 LINE L1 5193 5782 -530 5 1212 611 152 9 0 chr6 82265511 82265623 -67251414 + GA-rich Low_complexity Low_complexity 2 114 0 5 1212 221 302 32 0 chr6 82265883 82265946 -67251091 + MIR SINE MIR 57 121 -141 5 1212 462 123 0 0 chr6 82265948 82266021 -67251016 - MTC LTR MaLR -348 73 1 5 1212 887 90 0 7 chr6 82266113 82266258 -67250779 + (TC)n Simple_repeat Simple_repeat 1 144 0 5 1212 202 200 0 0 chr6 82266258 82266293 -67250744 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1212 945 60 255 0 chr6 82266318 82266467 -67250570 + B2_Mm2 SINE B2 1 187 -8 5 1212 249 108 0 0 chr6 82266641 82266678 -67250359 + (ATG)n Simple_repeat Simple_repeat 2 38 0 5 1212 364 269 32 58 chr6 82267202 82267244 -67249793 - L2 LINE L2 -513 2906 2865 5 1212 2123 211 64 107 chr6 82267244 82267882 -67249155 - RMER19C LTR ERVK 0 611 1 5 1212 364 269 32 58 chr6 82267882 82267993 -67249044 - L2 LINE L2 -555 2864 2757 5 1212 385 313 76 8 chr6 82269276 82269408 -67247629 + MTEa LTR MaLR 1 141 -238 5 1212 351 322 82 22 chr6 82269573 82269757 -67247280 - L2 LINE L2 -728 2691 2497 5 1212 433 221 120 24 chr6 82270068 82270193 -67246844 + B3A SINE B2 1 137 -61 5 1212 561 30 0 0 chr6 82270198 82270265 -67246772 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1212 261 300 0 0 chr6 82270269 82270379 -67246658 + A-rich Low_complexity Low_complexity 1 110 0 5 1212 592 293 38 24 chr6 82270379 82270592 -67246445 + B3 SINE B2 1 216 0 5 1212 799 316 124 35 chr6 82271262 82271917 -67245120 + L2a LINE L2 2151 2863 -556 5 1212 358 327 44 90 chr6 82271979 82272356 -67244681 - MTE2b LTR MaLR -24 335 3 5 1212 198 0 0 0 chr6 82272385 82272407 -67244630 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1212 246 324 201 0 chr6 82272473 82272751 -67244286 + L2a LINE L2 3058 3391 -35 5 1212 696 281 151 25 chr6 82273917 82274195 -67242842 + L1M4b LINE L1 59 371 -6963 5 1212 789 317 217 21 chr6 82275064 82275853 -67241184 + L1M4b LINE L1 681 1623 -5711 5 1212 440 281 92 43 chr6 82275990 82276295 -67240742 + L1M4b LINE L1 3645 3964 -3042 5 1212 425 281 89 31 chr6 82276318 82276682 -67240355 + L1M4b LINE L1 4904 5301 -1705 5 1212 5517 122 91 11 chr6 82276678 82277404 -67239633 + L1VL4 LINE L1 17 767 -5535 5 1212 1168 56 0 7 chr6 82277404 82277548 -67239489 + B1_Mm SINE Alu 1 143 -4 5 1212 710 53 0 10 chr6 82277548 82277644 -67239393 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 5 1212 12281 74 6 6 chr6 82277644 82279413 -67237624 + L1VL4 LINE L1 768 2578 -981 5 1212 9019 132 16 3 chr6 82279414 82281643 -67235394 + L1_Mus4 LINE L1 4375 6633 -3 5 1212 591 362 75 22 chr6 82281670 82282176 -67234861 + Lx8 LINE L1 6879 7411 -62 5 1212 1014 268 29 18 chr6 82282285 82282566 -67234471 + B4A SINE B4 1 284 -8 5 1212 550 326 42 84 chr6 82282625 82282809 -67234228 + L1M4b LINE L1 5295 5476 -1530 5 1212 321 26 0 0 chr6 82282809 82282847 -67234190 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 5 1212 550 326 42 84 chr6 82282847 82283067 -67233970 + L1M4b LINE L1 5477 5682 -1324 5 1212 265 271 88 24 chr6 82283068 82283193 -67233844 + B4 SINE B4 2 134 -158 5 1212 386 273 56 78 chr6 82283370 82283549 -67233488 + L1M4b LINE L1 5647 5821 -1185 5 1212 555 269 29 23 chr6 82283844 82284015 -67233022 + ID_B1 SINE B4 6 177 -47 5 1212 221 323 94 58 chr6 82284223 82284394 -67232643 - MIRc SINE MIR -55 213 37 5 1212 337 155 0 0 chr6 82284917 82284975 -67232062 - HAL1-3A_ME LINE L1 -826 2032 1975 5 1212 462 253 0 0 chr6 82285000 82285158 -67231879 + (TG)n Simple_repeat Simple_repeat 2 159 0 5 1212 291 157 0 0 chr6 82285180 82285231 -67231806 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1212 597 308 88 107 chr6 82285293 82285828 -67231209 - MT2A LTR ERVL -8 525 1 5 1212 667 222 121 20 chr6 82286325 82286523 -67230514 + ID_B1 SINE B4 3 220 -4 5 1212 752 0 11 0 chr6 82286705 82286793 -67230244 + (CA)n Simple_repeat Simple_repeat 2 90 0 5 1212 273 135 0 0 chr6 82287860 82287912 -67229125 + (TTG)n Simple_repeat Simple_repeat 2 53 0 5 1212 549 250 71 35 chr6 82287915 82288056 -67228981 - B1_Mur2 SINE Alu -1 148 3 5 1212 1728 138 15 132 chr6 82288173 82288582 -67228455 - ORR1B1 LTR MaLR 0 394 1 5 1212 195 307 32 64 chr6 82289319 82289413 -67227624 + L2a LINE L2 3336 3426 0 5 1212 1730 227 47 40 chr6 82290519 82291200 -67225837 - RMER13B LTR ERVK -4 904 272 5 1212 1814 184 22 36 chr6 82291219 82291664 -67225373 - RMER17B LTR ERVK -519 439 1 5 1212 239 278 28 0 chr6 82291881 82291953 -67225084 - B1F2 SINE Alu -26 123 50 5 1212 292 331 38 108 chr6 82291955 82292141 -67224896 + B3A SINE B2 12 184 -14 5 1212 284 237 42 63 chr6 82292155 82292344 -67224693 + L1M3 LINE L1 3106 3290 -2853 5 1212 560 263 130 74 chr6 82292390 82292718 -67224319 + L1M3 LINE L1 3761 4099 -2047 5 1212 544 285 20 75 chr6 82293310 82293511 -67223526 + B3A SINE B2 9 198 0 5 1212 8630 26 1 0 chr6 82293812 82295105 -67221932 - L1Md_A LINE L1 -1 6581 5288 5 1212 40265 17 7 6 chr6 82295099 82301005 -67216032 - L1Md_A LINE L1 -1 6581 677 5 1212 501 179 78 29 chr6 82301694 82301796 -67215241 + ORR1B1 LTR MaLR 1 94 -300 5 1212 691 74 0 0 chr6 82301798 82301893 -67215144 + MTB_Mm LTR MaLR 1 95 -312 5 1212 2253 68 61 3 chr6 82301893 82302220 -67214817 + ORR1A1 LTR MaLR 1 346 0 5 1212 2355 77 0 15 chr6 82302220 82302542 -67214495 + MTB_Mm LTR MaLR 91 407 0 5 1212 1724 128 52 3 chr6 82302542 82302831 -67214206 + ORR1B1 LTR MaLR 92 394 0 5 1212 1627 134 0 0 chr6 82303247 82303500 -67213537 - RMER19A LTR ERVK -483 254 2 5 1212 198 103 0 0 chr6 82304454 82304483 -67212554 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 5 1212 687 154 168 0 chr6 82304663 82304812 -67212225 - URR1A DNA MER1_type -51 175 2 5 1212 1057 238 109 33 chr6 82306162 82306493 -67210544 - ORR1D2 LTR MaLR -12 358 3 5 1212 345 47 0 0 chr6 82306939 82306982 -67210055 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1212 1449 159 8 23 chr6 82307800 82308063 -67208974 + MTC LTR MaLR 1 259 -162 5 1212 249 115 39 0 chr6 82308068 82308120 -67208917 + Lx9 LINE L1 7582 7635 -9 5 1212 570 321 92 70 chr6 82308329 82308657 -67208380 + MLT1A0 LTR MaLR 29 363 -2 5 1212 429 109 0 0 chr6 82309196 82309260 -67207777 + (CACG)n Simple_repeat Simple_repeat 4 67 0 5 1212 803 321 28 19 chr6 82309260 82309584 -67207453 - RMER15 LTR ERVL -38 537 211 5 1212 1455 181 237 45 chr6 82310205 82310669 -67206368 + RMER15 LTR ERVL 9 561 -14 5 1212 342 0 0 0 chr6 82311903 82311941 -67205096 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1212 393 320 45 45 chr6 82312068 82312225 -67204812 - MER20 DNA MER1_type -55 164 8 5 1212 301 349 144 36 chr6 82312262 82312568 -67204469 + MLT1J-int LTR MaLR 1042 1380 -7 5 1212 517 307 21 35 chr6 82312722 82312867 -67204170 + RSINE1 SINE B4 1 143 -22 5 1212 444 36 0 0 chr6 82312870 82312876 -67204161 + (TC)n Simple_repeat Simple_repeat 1 6 0 5 1212 1038 82 6 12 chr6 82312876 82313037 -67204000 + (TTC)n Simple_repeat Simple_repeat 3 162 0 5 1212 444 36 0 0 chr6 82313037 82313086 -67203951 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 151 3561 167 19 19 chr6 82313102 82313772 -67203265 + Lx3C LINE L1 6303 6972 -4 5 1213 29 47 0 0 chr6 82313772 82313815 -67203222 + AT_rich Low_complexity Low_complexity 1 43 0 5 1213 2483 137 30 45 chr6 82314045 82314472 -67202565 + MTC LTR MaLR 1 421 0 6 1213 369 0 0 0 chr6 82315832 82315873 -67201164 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1213 548 311 15 39 chr6 82315968 82316172 -67200865 - B4A SINE B4 0 292 94 6 1213 265 291 12 48 chr6 82316427 82316510 -67200527 - B4A SINE B4 -175 117 38 6 1213 312 27 0 0 chr6 82317018 82317055 -67199982 + (CAG)n Simple_repeat Simple_repeat 2 38 0 6 1213 519 290 14 55 chr6 82317090 82317236 -67199801 + RSINE1 SINE B4 3 142 -23 6 1213 351 137 0 0 chr6 82317238 82317311 -67199726 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 1213 897 10 0 0 chr6 82317572 82317674 -67199363 + (TC)n Simple_repeat Simple_repeat 2 103 0 6 1213 312 255 27 36 chr6 82318601 82318711 -67198326 + MLT2B3 LTR ERVL 5 113 -441 6 1213 239 256 50 25 chr6 82318919 82318999 -67198038 + MTEb LTR MaLR 287 368 -11 6 1213 252 266 84 143 chr6 82319009 82319079 -67197958 + L1M5 LINE L1 4960 5020 -1126 6 1213 1084 56 42 0 chr6 82319079 82319221 -67197816 + B1_Mus1 SINE Alu 1 148 0 6 1213 252 266 84 143 chr6 82319221 82319387 -67197650 + L1M5 LINE L1 5021 5182 -964 6 1213 1224 42 18 0 chr6 82319440 82319607 -67197430 + (TAGA)n Simple_repeat Simple_repeat 2 171 0 6 1213 1249 86 7 5 chr6 82319619 82320211 -67196826 + (TAGA)n Simple_repeat Simple_repeat 1 593 0 6 1213 297 264 114 16 chr6 82320496 82320619 -67196418 + L1M5 LINE L1 5552 5686 -487 6 1213 275 282 109 10 chr6 82320818 82321004 -67196033 - L1MA6 LINE L1 -2 6298 6099 6 1213 194 149 0 21 chr6 82321005 82321046 -67195991 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 6 1213 393 22 0 0 chr6 82321046 82321092 -67195945 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1213 194 149 0 21 chr6 82321092 82321098 -67195939 + (TCTCTG)n Simple_repeat Simple_repeat 3 8 0 6 1213 705 297 6 0 chr6 82321099 82321274 -67195763 - B3A SINE B2 -22 176 1 6 1213 585 275 64 72 chr6 82321280 82321668 -67195369 - L1M2 LINE L1 -1544 4599 4212 6 1213 692 278 75 32 chr6 82321672 82321951 -67195086 + B4A SINE B4 2 292 0 6 1213 256 172 34 22 chr6 82321967 82322056 -67194981 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 1213 3965 80 88 9 chr6 82322058 82322614 -67194423 + MT2B LTR ERVL 2 601 0 6 1213 7236 140 100 3 chr6 82322619 82323824 -67193213 + MERVL_2A-int LTR ERVL 6 1327 -4434 6 1213 398 53 18 0 chr6 82323824 82323881 -67193156 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1213 1495 312 104 21 chr6 82323929 82325337 -67191700 - L1M2 LINE L1 -1960 4186 2642 6 1213 1665 207 41 5 chr6 82325496 82325884 -67191153 - MTD LTR MaLR 0 419 18 6 1213 961 196 48 24 chr6 82326178 82326387 -67190650 - B3 SINE B2 0 216 3 6 1213 263 252 31 202 chr6 82326448 82326577 -67190460 - MER5A DNA MER1_type -3 186 80 6 1213 310 324 93 82 chr6 82327262 82327350 -67189687 - Lx9 LINE L1 -72 7401 7328 6 1213 438 20 0 0 chr6 82327350 82327401 -67189636 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1213 524 281 104 12 chr6 82327401 82327588 -67189449 - Lx9 LINE L1 -204 7440 7130 6 1213 338 125 0 45 chr6 82327881 82327948 -67189089 + CT-rich Low_complexity Low_complexity 2 65 0 6 1213 414 0 0 0 chr6 82327997 82328043 -67188994 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1213 588 14 0 0 chr6 82328055 82328124 -67188913 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1213 900 186 188 5 chr6 82328144 82328254 -67188783 + ORR1C2 LTR MaLR 42 177 -197 6 1213 486 0 0 0 chr6 82328254 82328308 -67188729 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1213 900 185 196 4 chr6 82328308 82328357 -67188680 + ORR1C2 LTR MaLR 172 248 -136 6 1213 414 0 0 0 chr6 82328357 82328403 -67188634 + (CCTG)n Simple_repeat Simple_repeat 3 48 0 6 1213 900 185 196 4 chr6 82328403 82328518 -67188519 + ORR1C2 LTR MaLR 249 382 -2 6 1213 588 277 61 56 chr6 82328565 82328695 -67188342 + B3 SINE B2 2 129 -87 6 1213 275 71 24 0 chr6 82328695 82328737 -67188300 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1213 588 277 61 56 chr6 82328737 82328820 -67188217 + B3 SINE B2 130 216 0 6 1213 294 331 27 7 chr6 82328827 82328976 -67188061 - L1M5 LINE L1 -437 5687 5536 6 1213 910 245 14 19 chr6 82329427 82329643 -67187394 + B3 SINE B2 2 216 0 6 1213 428 77 0 15 chr6 82329788 82329854 -67187183 + (TCCC)n Simple_repeat Simple_repeat 4 68 0 6 1213 315 0 0 0 chr6 82330231 82330266 -67186771 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1213 759 245 87 10 chr6 82331677 82331883 -67185154 - L1MA8 LINE L1 -571 5729 5508 6 1213 811 298 78 10 chr6 82331882 82332265 -67184772 + L1MA8 LINE L1 5714 6122 -169 6 1213 216 0 0 0 chr6 82332743 82332767 -67184270 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1213 1885 129 0 155 chr6 82332982 82333368 -67183669 + ORR1A3 LTR MaLR 1 326 0 6 1213 541 277 15 69 chr6 82333438 82333469 -67183568 + B3A SINE B2 5 28 -170 6 1213 383 53 35 0 chr6 82333469 82333526 -67183511 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 1213 1085 85 0 0 chr6 82333526 82333667 -67183370 - B1_Mus1 SINE Alu -7 141 1 6 1213 541 277 15 69 chr6 82333667 82333836 -67183201 + B3A SINE B2 29 194 -4 6 1213 563 274 10 61 chr6 82334317 82334491 -67182546 + B3A SINE B2 1 169 -29 6 1213 432 37 0 0 chr6 82334491 82334545 -67182492 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1213 563 274 10 61 chr6 82334545 82334568 -67182469 + B3A SINE B2 170 188 -10 6 1213 2724 80 10 3 chr6 82334633 82335020 -67182017 + MTA_Mm LTR MaLR 7 396 0 6 1213 7776 81 41 3 chr6 82335020 82336078 -67180959 + MTA_Mm-int LTR MaLR 1 1098 0 6 1213 3256 51 2 8 chr6 82336078 82336476 -67180561 + MTA_Mm LTR MaLR 1 396 0 6 1213 665 212 113 25 chr6 82336770 82336973 -67180064 - MTD LTR MaLR -14 405 185 6 1213 986 209 223 49 chr6 82337010 82337337 -67179700 + ORR1C2 LTR MaLR 1 384 0 6 1213 373 229 47 19 chr6 82337341 82337448 -67179589 + ID_B1 SINE B4 115 224 0 6 1213 1244 260 18 45 chr6 82338078 82338434 -67178603 + ORR1E LTR MaLR 8 377 -2 6 1213 1029 256 99 10 chr6 82338522 82338905 -67178132 - MTD LTR MaLR -14 405 5 6 1213 33021 74 3 0 chr6 82339524 82344585 -67172452 + L1Md_F2 LINE L1 515 5586 -297 6 1213 7870 47 23 8 chr6 82344585 82345566 -67171471 + L1Md_F2 LINE L1 5587 6582 0 6 1213 871 213 69 30 chr6 82345631 82345834 -67171203 - B3 SINE B2 0 216 6 6 1213 7474 63 15 6 chr6 82345866 82347445 -67169592 - L1Md_F2 LINE L1 0 6582 4987 6 1213 254 220 17 17 chr6 82347857 82347917 -67169120 - MLT1J1 LTR MaLR -306 138 79 6 1213 321 47 0 0 chr6 82348179 82348222 -67168815 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1213 28 36 0 35 chr6 82348320 82348359 -67168678 + AT_rich Low_complexity Low_complexity 1 38 0 6 1213 595 178 305 24 chr6 82348359 82348526 -67168511 - B3 SINE B2 -2 214 1 6 1213 28 36 0 35 chr6 82348526 82348543 -67168494 + AT_rich Low_complexity Low_complexity 1 17 0 6 1213 23 0 0 0 chr6 82348791 82348814 -67168223 + AT_rich Low_complexity Low_complexity 1 23 0 6 1213 800 152 62 0 chr6 82349131 82349276 -67167761 + B3 SINE B2 1 154 -62 6 1213 204 67 0 0 chr6 82349292 82349322 -67167715 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1213 675 249 5 68 chr6 82349532 82349722 -67167315 + B3A SINE B2 5 182 -16 6 1213 198 171 0 0 chr6 82349947 82349988 -67167049 + GA-rich Low_complexity Low_complexity 4 44 0 6 1213 471 18 0 0 chr6 82350046 82350102 -67166935 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1213 450 200 118 44 chr6 82350103 82350239 -67166798 - B3A SINE B2 -51 147 2 6 1213 297 0 0 0 chr6 82355465 82355498 -67161539 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 6 1213 318 327 76 38 chr6 82356596 82356806 -67160231 - L1M5 LINE L1 -287 5837 5620 6 1213 296 314 0 0 chr6 82357379 82357449 -67159588 + ID4_ SINE ID 13 82 -1 6 1213 441 274 112 40 chr6 82357556 82357708 -67159329 - RSINE1 SINE B4 -1 164 2 6 1213 3109 17 6 0 chr6 82357818 82358162 -67158875 + ORR1A0 LTR MaLR 1 346 0 6 1213 5930 18 0 0 chr6 82358285 82358952 -67158085 - L1Md_A LINE L1 0 6582 5916 6 1213 270 0 0 0 chr6 82358975 82359005 -67158032 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 6 1213 717 207 158 12 chr6 82359005 82359176 -67157861 - B3 SINE B2 -16 200 5 6 1213 7747 166 12 6 chr6 82360242 82361554 -67155483 - Lx2B LINE L1 0 7000 5681 6 1213 180 179 0 0 chr6 82362810 82362849 -67154188 + GA-rich Low_complexity Low_complexity 2 40 0 6 1213 215 337 98 29 chr6 82363652 82363872 -67153165 + L2a LINE L2 3117 3393 -33 6 1213 327 233 0 109 chr6 82364688 82364789 -67152248 + B4 SINE B4 9 98 -194 6 1213 776 216 43 43 chr6 82364912 82365120 -67151917 + B3 SINE B2 2 209 -7 6 1213 642 89 0 0 chr6 82365120 82365210 -67151827 + (TA)n Simple_repeat Simple_repeat 2 91 0 6 1213 275 303 0 0 chr6 82365619 82365685 -67151352 + RMER30 DNA MER1_type 5 70 -132 6 1213 220 194 0 0 chr6 82366573 82366609 -67150428 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1213 695 279 49 28 chr6 82366612 82366896 -67150141 - B4A SINE B4 -2 290 1 6 1213 24 53 0 0 chr6 82367507 82367545 -67149492 + AT_rich Low_complexity Low_complexity 1 38 0 6 1213 1024 276 7 30 chr6 82367564 82367859 -67149178 + B4 SINE B4 5 292 0 6 1213 601 364 74 31 chr6 82369063 82369480 -67147557 + MT2A LTR ERVL 1 435 -98 6 1213 380 284 161 0 chr6 82369474 82369636 -67147401 + MT2A LTR ERVL 343 530 -3 6 1213 367 197 330 0 chr6 82370012 82370167 -67146870 + B3 SINE B2 6 210 -6 6 1213 202 323 15 0 chr6 82370406 82370471 -67146566 + CT-rich Low_complexity Low_complexity 5 70 0 6 1213 397 316 67 69 chr6 82370995 82371355 -67145682 - ORR1E LTR MaLR 0 359 1 6 1213 3149 38 0 0 chr6 82371382 82371754 -67145283 - L1Md_T LINE L1 0 6582 6211 6 1213 1412 222 68 49 chr6 82371781 82372150 -67144887 - MTEa LTR MaLR -3 376 1 6 1213 909 214 78 0 chr6 82372540 82372732 -67144305 + B3 SINE B2 1 207 -9 6 1213 273 119 0 0 chr6 82373496 82373538 -67143499 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1213 1025 201 19 5 chr6 82373939 82374144 -67142893 + B3 SINE B2 5 212 -4 6 1213 22 70 0 0 chr6 82374148 82374191 -67142846 + AT_rich Low_complexity Low_complexity 1 43 0 6 1213 380 249 79 127 chr6 82374634 82374666 -67142371 - B2_Mm2 SINE B2 -11 184 156 6 1213 312 48 0 0 chr6 82374666 82374708 -67142329 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1213 535 249 79 127 chr6 82374708 82374864 -67142173 - B3A SINE B2 -30 168 5 6 1213 213 213 0 0 chr6 82376146 82376193 -67140844 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1213 1630 155 39 109 chr6 82376217 82376658 -67140379 - RMER17C LTR ERVK 0 410 1 7 1213 2346 145 48 19 chr6 82376658 82377079 -67139958 - RMER17C-int LTR ERVK 0 3238 2806 7 1213 798 160 134 34 chr6 82377077 82377264 -67139773 - RMER17C-int LTR ERVK -535 2703 2533 7 1213 651 170 16 122 chr6 82377282 82377470 -67139567 - RMER17C-int LTR ERVK -907 2331 2164 7 1213 790 244 170 33 chr6 82377469 82377892 -67139145 - RMER17C-int LTR ERVK -1250 1988 1508 7 1213 300 211 113 21 chr6 82378257 82378354 -67138683 - RMER17C-int LTR ERVK -2754 484 379 7 1213 492 271 185 48 chr6 82378843 82379157 -67137880 - ORR1E LTR MaLR -2 357 1 7 1213 510 241 14 35 chr6 82379486 82379522 -67137515 + B4 SINE B4 49 81 -211 7 1213 249 273 17 76 chr6 82379522 82379641 -67137396 + PB1D9 SINE Alu 1 112 -8 7 1213 250 129 113 0 chr6 82380598 82380660 -67136377 + (TATTG)n Simple_repeat Simple_repeat 1 69 0 7 1213 566 322 56 48 chr6 82380661 82380887 -67136150 - MT2A LTR ERVL -72 461 241 7 1213 462 88 0 0 chr6 82380887 82380955 -67136082 + (CTG)n Simple_repeat Simple_repeat 3 70 0 7 1213 566 322 56 48 chr6 82380955 82380996 -67136041 - MT2A LTR ERVL -293 240 192 7 1213 298 239 114 5 chr6 82380996 82381148 -67135889 + RMER17A LTR ERVK 205 418 -333 7 1213 2679 134 38 9 chr6 82381149 82381599 -67135438 - Lx LINE L1 0 6654 6192 7 1213 4013 91 25 0 chr6 82381599 82382147 -67134890 + Lx LINE L1 5621 6182 -472 7 1213 250 291 25 25 chr6 82382208 82382289 -67134748 - MTEa LTR MaLR -279 100 20 7 1213 1027 234 133 16 chr6 82383203 82383512 -67133525 - ORR1E LTR MaLR 0 359 15 7 1213 278 228 0 0 chr6 82383748 82383805 -67133232 - MTEb LTR MaLR -8 371 315 7 1213 467 316 56 75 chr6 82384424 82384835 -67132202 - MER20B DNA MER1_type -19 764 362 7 1213 1039 275 79 50 chr6 82384959 82385070 -67131967 + MER44B DNA MER2_type 14 115 -435 7 1213 1432 35 4 128 chr6 82385070 82385297 -67131740 - L1Md_F3 LINE L1 -14 6570 6372 7 1213 1039 275 79 50 chr6 82385297 82385538 -67131499 + MER44B DNA MER2_type 116 369 -181 7 1213 180 0 0 0 chr6 82385538 82385558 -67131479 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1213 1039 275 79 50 chr6 82385558 82385660 -67131377 + MER44B DNA MER2_type 370 482 -68 7 1213 603 92 0 27 chr6 82385666 82385778 -67131259 + (TG)n Simple_repeat Simple_repeat 2 110 0 7 1213 382 284 36 29 chr6 82385803 82385941 -67131096 + MLT1D LTR MaLR 76 214 -291 7 1213 297 331 56 25 chr6 82385989 82386150 -67130887 + MLT1D LTR MaLR 304 469 -36 7 1213 190 51 24 49 chr6 82386198 82386239 -67130798 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1213 513 246 78 72 chr6 82386321 82386474 -67130563 + ID_B1 SINE B4 66 219 -5 7 1213 201 68 22 43 chr6 82388060 82388106 -67128931 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 7 1213 1134 268 78 20 chr6 82388147 82388593 -67128444 + RMER5 LTR ERV1 63 534 0 7 1213 359 342 17 17 chr6 82388815 82388934 -67128103 + PB1 SINE Alu 2 120 -7 7 1213 303 71 0 0 chr6 82388944 82388986 -67128051 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1213 873 223 14 36 chr6 82389721 82389940 -67127097 + ID_B1 SINE B4 2 215 -9 7 1213 894 289 21 73 chr6 82390198 82390582 -67126455 - ORR1D2 LTR MaLR -6 364 1 7 1213 334 216 102 17 chr6 82391061 82391110 -67125927 - Lx8 LINE L1 0 7473 7425 7 1213 315 0 0 0 chr6 82391110 82391145 -67125892 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 7 1213 334 216 102 17 chr6 82391145 82391213 -67125824 - Lx8 LINE L1 -49 7424 7346 7 1213 426 327 58 70 chr6 82391275 82391604 -67125433 - MLT1D LTR MaLR -157 348 24 7 1213 21 0 0 0 chr6 82391700 82391721 -67125316 + AT_rich Low_complexity Low_complexity 1 21 0 7 1213 688 255 7 0 chr6 82392045 82392186 -67124851 + RSINE1 SINE B4 3 144 -21 7 1213 25 0 0 0 chr6 82392222 82392247 -67124790 + AT_rich Low_complexity Low_complexity 1 25 0 7 1213 907 277 111 11 chr6 82392755 82393124 -67123913 + L1MA4 LINE L1 5851 6256 -44 7 1213 34 24 0 0 chr6 82393296 82393337 -67123700 + AT_rich Low_complexity Low_complexity 1 41 0 7 1213 324 0 0 0 chr6 82393417 82393453 -67123584 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 1213 369 0 0 0 chr6 82393453 82393493 -67123544 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1213 1031 236 46 23 chr6 82393498 82393758 -67123279 - B4A SINE B4 -18 274 9 7 1213 486 0 0 0 chr6 82394181 82394235 -67122802 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1213 759 280 61 29 chr6 82395023 82395302 -67121735 - B4 SINE B4 -2 290 3 7 1213 1794 189 50 18 chr6 82395920 82396318 -67120719 - MTD LTR MaLR -8 411 1 7 1213 797 245 46 88 chr6 82396579 82396981 -67120056 - ORR1D1 LTR MaLR 0 394 34 7 1213 1040 222 19 14 chr6 82398502 82398712 -67118325 + B3 SINE B2 1 211 -5 7 1213 470 255 43 7 chr6 82398861 82398999 -67118038 - B1F SINE Alu -4 145 3 7 1213 371 284 166 23 chr6 82399299 82399525 -67117512 + Lx7 LINE L1 5666 5933 -1711 7 1213 326 144 19 28 chr6 82399890 82399997 -67117040 + T-rich Low_complexity Low_complexity 4 109 0 7 1213 1164 241 50 69 chr6 82400228 82400744 -67116293 - MT2B LTR ERVL 0 601 1 7 1213 1133 215 9 0 chr6 82400776 82400990 -67116047 - B3 SINE B2 0 216 1 7 1213 2988 38 3 0 chr6 82401145 82401490 -67115547 + ORR1A1 LTR MaLR 1 346 0 7 1213 446 229 53 0 chr6 82401802 82401938 -67115099 - B1_Mur1 SINE Alu -3 146 1 7 1213 21 57 0 0 chr6 82401945 82401980 -67115057 + AT_rich Low_complexity Low_complexity 1 35 0 7 1213 300 27 0 0 chr6 82403357 82403394 -67113643 + (ATTG)n Simple_repeat Simple_repeat 1 37 0 7 1213 321 281 91 30 chr6 82404422 82404554 -67112483 - ID_B1 SINE B4 -7 217 78 7 1213 661 252 106 25 chr6 82404582 82404781 -67112256 - B3 SINE B2 0 216 2 7 1213 405 290 108 50 chr6 82405047 82405370 -67111667 - MLT1C LTR MaLR -53 414 73 7 1213 733 290 47 9 chr6 82405440 82405673 -67111364 - MER58B DNA MER1_type -29 312 71 7 1213 253 214 0 51 chr6 82406092 82406151 -67110886 + polypurine Low_complexity Low_complexity 3 58 0 7 1213 270 0 0 0 chr6 82406934 82406964 -67110073 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 7 1213 538 301 70 29 chr6 82407499 82407653 -67109384 + B3 SINE B2 2 167 -49 7 1213 189 74 0 0 chr6 82407653 82407680 -67109357 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 7 1213 538 301 70 29 chr6 82407680 82407696 -67109341 + B3 SINE B2 168 179 -37 7 1213 609 268 70 39 chr6 82408183 82408439 -67108598 + B4A SINE B4 11 274 -18 7 1213 253 325 33 103 chr6 82408723 82408936 -67108101 + L2c LINE L2 3174 3371 -16 7 1213 278 139 49 25 chr6 82409678 82409759 -67107278 + CT-rich Low_complexity Low_complexity 3 85 0 7 1213 894 303 50 21 chr6 82409948 82410288 -67106749 - Lx8 LINE L1 -185 7288 6939 7 1213 346 191 73 18 chr6 82410652 82410817 -67106220 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 7 1213 483 18 0 0 chr6 82410984 82411040 -67105997 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1213 297 0 0 0 chr6 82411040 82411072 -67105965 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1213 210 71 0 0 chr6 82411976 82412004 -67105033 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7 1213 513 323 0 0 chr6 82412028 82412152 -67104885 - RSINE1 SINE B4 -17 148 25 7 1213 270 0 0 0 chr6 82412393 82412423 -67104614 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1213 3422 43 2 0 chr6 82413587 82413986 -67103051 - MTB LTR MaLR 0 400 1 7 1213 834 326 85 52 chr6 82414083 82414565 -67102472 + Lx8 LINE L1 6722 7219 -254 7 1213 197 302 19 0 chr6 82414782 82414835 -67102202 + L2c LINE L2 3292 3345 -42 7 1213 642 288 172 24 chr6 82415343 82415698 -67101339 - MTD LTR MaLR -1 418 1 7 1213 305 287 0 44 chr6 82415912 82416003 -67101034 - B4A SINE B4 -97 195 109 7 1213 486 308 0 14 chr6 82416206 82416354 -67100683 + B4 SINE B4 64 209 -83 7 1213 441 0 0 0 chr6 82416505 82416554 -67100483 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1213 790 291 40 9 chr6 82416631 82416856 -67100181 - B4 SINE B4 -60 232 1 7 1213 435 19 0 0 chr6 82417120 82417172 -67099865 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1213 747 208 7 7 chr6 82417248 82417398 -67099639 - RMER5 LTR ERV1 0 534 385 7 1213 210 147 0 0 chr6 82417413 82417447 -67099590 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1213 374 324 22 44 chr6 82417458 82417639 -67099398 - RMER5 LTR ERV1 -172 362 186 7 1213 604 259 15 30 chr6 82417651 82417854 -67099183 - RMER5 LTR ERV1 -334 200 1 7 1213 405 285 65 71 chr6 82418041 82418211 -67098826 + B4A SINE B4 2 170 -122 7 1213 309 168 41 47 chr6 82418333 82418502 -67098535 + (CATA)n Simple_repeat Simple_repeat 4 171 0 7 1213 208 238 0 0 chr6 82418505 82418547 -67098490 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1213 1313 196 9 46 chr6 82419514 82419840 -67097197 - RCHARR1 DNA MER1_type 0 974 661 7 1213 538 231 17 0 chr6 82419895 82420012 -67097025 - B3A SINE B2 -79 119 1 7 1213 971 220 66 15 chr6 82420012 82420284 -67096753 - RCHARR1 DNA MER1_type -305 669 384 7 1213 1148 192 14 9 chr6 82420406 82420621 -67096416 - B3 SINE B2 0 216 1 7 1213 201 94 0 0 chr6 82421863 82421895 -67095142 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 7 1213 1526 164 145 6 chr6 82421906 82422244 -67094793 - MTD LTR MaLR -28 391 7 7 1213 375 294 0 0 chr6 82423441 82423533 -67093504 + B4 SINE B4 4 95 -197 7 1213 838 272 76 19 chr6 82423538 82423800 -67093237 + B4 SINE B4 5 281 -11 7 1213 230 288 51 51 chr6 82424777 82424894 -67092143 + MamRep488 DNA hAT 29 145 -74 7 1213 883 290 50 29 chr6 82424893 82425144 -67091893 + B4 SINE B4 7 263 -29 7 1213 474 18 0 0 chr6 82425144 82425199 -67091838 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1213 883 290 50 29 chr6 82425199 82425227 -67091810 + B4 SINE B4 264 291 -1 7 1213 200 261 0 0 chr6 82425237 82425283 -67091754 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1213 261 199 53 0 chr6 82425532 82425703 -67091334 + (CATG)n Simple_repeat Simple_repeat 1 180 0 7 1213 615 229 244 78 chr6 82426119 82426427 -67090610 - ORR1D2 LTR MaLR -11 359 1 7 1213 1064 304 21 25 chr6 82426427 82426753 -67090284 + MTEa LTR MaLR 55 379 0 7 1213 230 296 77 96 chr6 82426766 82426844 -67090193 + MTE2b LTR MaLR 97 182 -177 7 1213 666 37 0 0 chr6 82426844 82426925 -67090112 + (TC)n Simple_repeat Simple_repeat 1 81 0 8 1213 271 250 80 131 chr6 82426925 82427093 -67089944 + MTE2b LTR MaLR 183 367 -12 7 1213 420 286 93 43 chr6 82429160 82429299 -67087738 + B4 SINE B4 46 191 -101 8 1213 471 35 0 0 chr6 82429554 82429611 -67087426 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1213 905 262 40 102 chr6 82430117 82430568 -67086469 - RLTR12B LTR ERVK -46 482 60 8 1213 682 210 111 61 chr6 82431323 82431521 -67085516 + B3 SINE B2 2 209 -7 8 1213 1248 272 173 63 chr6 82431543 82431872 -67085165 - BLACKJACK DNA AcHobo -686 2258 1932 8 1213 666 273 85 10 chr6 82431872 82432072 -67084965 + B3 SINE B2 2 216 0 8 1213 1248 272 173 63 chr6 82432072 82432833 -67084204 - BLACKJACK DNA AcHobo -1013 1931 1048 8 1213 598 290 135 29 chr6 82433009 82433254 -67083783 + B4 SINE B4 3 273 -19 8 1213 272 338 179 15 chr6 82433274 82433683 -67083354 - BLACKJACK DNA AcHobo -1968 976 501 8 1213 405 0 0 0 chr6 82434236 82434281 -67082756 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1213 785 283 25 14 chr6 82434288 82434577 -67082460 - L1MA4 LINE L1 -203 5953 5662 8 1213 230 205 146 67 chr6 82434581 82434670 -67082367 - RMER30 DNA MER1_type -2 200 105 8 1213 360 283 26 46 chr6 82434707 82434859 -67082178 - L1MA4 LINE L1 -646 5657 5509 8 1213 598 289 109 41 chr6 82435106 82435167 -67081870 - B4A SINE B4 -7 285 222 8 1213 200 59 0 29 chr6 82435167 82435202 -67081835 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8 1213 598 289 109 41 chr6 82435202 82435407 -67081630 - B4A SINE B4 -71 221 3 8 1213 470 342 60 0 chr6 82437624 82437808 -67079229 + MER58A DNA MER1_type 30 224 0 8 1213 443 290 188 4 chr6 82439249 82439488 -67077549 - B4A SINE B4 0 292 10 8 1213 790 144 10 33 chr6 82440458 82440633 -67076404 - URR1A DNA MER1_type 0 226 52 8 1213 829 159 6 6 chr6 82440730 82440894 -67076143 + CT-rich Low_complexity Low_complexity 4 167 0 8 1213 360 177 16 0 chr6 82441291 82441353 -67075684 + ID2 SINE ID 3 65 -18 8 1213 762 244 57 28 chr6 82441429 82441606 -67075431 - B3A SINE B2 -16 182 1 8 1213 410 314 67 34 chr6 82441960 82442168 -67074869 - B4A SINE B4 -76 216 2 8 1213 963 266 8 28 chr6 82442187 82442435 -67074602 + B4 SINE B4 50 292 0 8 1214 899 298 121 17 chr6 82444672 82445020 -67072017 - MTD LTR MaLR -16 403 20 8 1214 1457 256 30 8 chr6 82445487 82445858 -67071179 + MTEb LTR MaLR 1 379 0 8 1214 297 360 56 46 chr6 82446161 82446592 -67070445 + L1M5 LINE L1 5314 5748 -492 8 1214 523 157 102 8 chr6 82447434 82447562 -67069475 - MTD LTR MaLR 0 419 280 8 1214 248 246 0 0 chr6 82447561 82447622 -67069415 - MTC LTR MaLR -343 78 18 8 1214 508 301 26 21 chr6 82448004 82448194 -67068843 - L1MC LINE L1 -2313 5569 5379 8 1214 874 54 20 26 chr6 82448383 82448535 -67068502 + (TAGA)n Simple_repeat Simple_repeat 4 154 0 8 1214 369 224 52 17 chr6 82448555 82448728 -67068309 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 8 1214 4594 161 41 10 chr6 82449113 82449920 -67067117 - Lx5 LINE L1 0 7050 6219 8 1214 339 227 56 11 chr6 82450494 82450583 -67066454 + B3 SINE B2 103 195 -21 8 1214 566 14 14 0 chr6 82450827 82450898 -67066139 + (GA)n Simple_repeat Simple_repeat 1 72 0 8 1214 282 56 0 0 chr6 82450909 82450945 -67066092 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 8 1214 375 296 21 111 chr6 82451232 82451308 -67065729 + Lx8 LINE L1 6087 6162 -1311 8 1214 468 0 0 0 chr6 82451308 82451360 -67065677 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1214 375 296 21 111 chr6 82451360 82451526 -67065511 + Lx8 LINE L1 6163 6307 -1166 8 1214 1577 260 14 27 chr6 82451528 82451971 -67065066 + Lx8 LINE L1 6414 6850 -623 8 1214 568 312 104 54 chr6 82452221 82452499 -67064538 + B4A SINE B4 1 292 0 8 1214 837 229 28 28 chr6 82452756 82452972 -67064065 + B3 SINE B2 1 216 0 8 1214 469 15 59 0 chr6 82453490 82453558 -67063479 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 8 1214 197 228 29 22 chr6 82453699 82453838 -67063199 + (CA)n Simple_repeat Simple_repeat 2 141 0 8 1214 230 283 40 20 chr6 82454461 82454562 -67062475 - MER103 DNA DNA -59 107 5 8 1214 198 117 32 32 chr6 82454767 82454829 -67062208 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 8 1214 1210 185 5 10 chr6 82455166 82455373 -67061664 - B3 SINE B2 -9 207 2 8 1214 646 299 49 0 chr6 82455704 82455837 -67061200 + B3A SINE B2 21 154 -44 8 1214 345 62 0 0 chr6 82455837 82455885 -67061152 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1214 646 299 49 0 chr6 82455885 82455915 -67061122 + B3A SINE B2 155 191 -7 8 1214 326 223 91 2 chr6 82455939 82456049 -67060988 + L1M3 LINE L1 5710 5829 -471 8 1214 247 216 53 26 chr6 82456066 82456142 -67060895 + ID4 SINE ID 2 79 -4 8 1214 1521 227 34 58 chr6 82456329 82456708 -67060329 - ORR1D2 LTR MaLR 0 370 1 8 1214 293 180 0 62 chr6 82456708 82456773 -67060264 - MTE2a LTR MaLR -56 323 263 8 1214 324 0 0 0 chr6 82456888 82456924 -67060113 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1214 528 281 29 7 chr6 82456924 82457064 -67059973 - RSINE1 SINE B4 -20 145 3 8 1214 687 236 70 20 chr6 82458912 82459111 -67057926 + ID_B1 SINE B4 5 213 -11 8 1214 4687 225 19 11 chr6 82459789 82460742 -67056295 + Lx5 LINE L1 6061 7020 -30 8 1214 433 244 23 102 chr6 82460801 82460929 -67056108 + B3A SINE B2 17 134 -64 8 1214 1754 71 0 0 chr6 82461299 82461524 -67055513 + L1_Mus1 LINE L1 6342 6566 -1 8 1214 1064 175 96 5 chr6 82461971 82462189 -67054848 + MTD LTR MaLR 96 333 -86 8 1214 618 104 0 0 chr6 82462847 82462943 -67054094 + (TG)n Simple_repeat Simple_repeat 2 97 0 8 1214 484 268 41 0 chr6 82463566 82463693 -67053344 + B1_Mur1 SINE Alu 1 141 -8 8 1214 26 109 0 0 chr6 82463693 82463803 -67053234 + AT_rich Low_complexity Low_complexity 1 110 0 8 1214 22 0 0 0 chr6 82463838 82463860 -67053177 + AT_rich Low_complexity Low_complexity 1 22 0 8 1214 275 303 101 0 chr6 82463917 82464006 -67053031 + ID_B1 SINE B4 78 175 -49 8 1214 328 284 112 11 chr6 82463926 82464015 -67053022 + PB1D10 SINE Alu 6 103 -14 8 1214 661 214 45 34 chr6 82464629 82464808 -67052229 + ORR1C2 LTR MaLR 1 181 -193 8 1214 240 154 0 0 chr6 82464834 82464886 -67052151 + CT-rich Low_complexity Low_complexity 1 52 0 8 1214 1046 170 14 33 chr6 82464888 82465101 -67051936 + ORR1C2 LTR MaLR 176 384 0 8 1214 195 338 38 38 chr6 82465308 82465388 -67051649 - L2b LINE L2 -296 3079 3000 8 1214 722 260 79 110 chr6 82465428 82465782 -67051255 + MTEa LTR MaLR 1 343 -36 8 1214 1136 226 114 39 chr6 82465922 82466281 -67050756 - MTD LTR MaLR -15 404 19 8 1214 255 250 68 0 chr6 82466306 82466394 -67050643 + Lx9 LINE L1 7502 7595 -49 8 1214 607 97 39 0 chr6 82466497 82466600 -67050437 + (CATA)n Simple_repeat Simple_repeat 4 110 0 8 1214 415 270 65 32 chr6 82467023 82467302 -67049735 - RLTR15 LTR ERVK -27 332 45 8 1214 4965 181 42 16 chr6 82468171 82469105 -67047932 + Lx5 LINE L1 6041 6998 -52 8 1214 339 25 0 0 chr6 82469106 82469146 -67047891 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 8 1214 259 218 0 124 chr6 82469147 82469236 -67047801 + B4 SINE B4 215 292 0 8 1214 231 232 0 0 chr6 82469250 82469306 -67047731 + GA-rich Low_complexity Low_complexity 6 61 0 8 1214 324 263 158 14 chr6 82469786 82469925 -67047112 + MER63A DNA AcHobo 8 166 -44 8 1214 21 0 0 0 chr6 82470050 82470071 -67046966 + AT_rich Low_complexity Low_complexity 1 21 0 8 1214 377 282 102 8 chr6 82470295 82470413 -67046624 - B4 SINE B4 -4 288 160 8 1214 423 0 0 0 chr6 82470448 82470495 -67046542 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1214 384 22 0 0 chr6 82470495 82470539 -67046498 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1214 669 231 38 25 chr6 82470544 82470704 -67046333 - B3A SINE B2 -29 169 8 8 1214 847 114 0 48 chr6 82470883 82471030 -67046007 + B1_Mur4 SINE Alu 11 150 0 8 1214 371 302 82 11 chr6 82471751 82471935 -67045102 - MIRc SINE MIR -49 219 23 8 1214 450 0 0 0 chr6 82472339 82472389 -67044648 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1214 510 280 41 14 chr6 82472394 82472539 -67044498 - B3A SINE B2 -48 150 2 8 1214 3147 238 71 43 chr6 82472555 82473061 -67043976 + RCHARR1 DNA MER1_type 3 514 -460 8 1214 1194 68 0 0 chr6 82473061 82473209 -67043828 + B1_Mus1 SINE Alu 1 148 0 8 1214 3147 238 71 43 chr6 82473209 82473641 -67043396 + RCHARR1 DNA MER1_type 515 968 -6 8 1214 1079 268 52 39 chr6 82473668 82474153 -67042884 + L1_Rod LINE L1 4932 5422 -425 8 1214 302 286 43 35 chr6 82474448 82474564 -67042473 - PB1D10 SINE Alu 0 117 1 8 1214 390 235 33 42 chr6 82474564 82474592 -67042445 - ID SINE ID -144 80 54 8 1214 34 24 0 0 chr6 82474724 82474765 -67042272 + AT_rich Low_complexity Low_complexity 1 41 0 8 1214 567 96 0 0 chr6 82474986 82475069 -67041968 + (TC)n Simple_repeat Simple_repeat 1 83 0 8 1214 425 263 19 44 chr6 82476665 82476824 -67040213 - MIR SINE MIR -48 214 60 8 1214 194 368 98 11 chr6 82477714 82477898 -67039139 + L2a LINE L2 2934 3133 -293 8 1214 278 26 26 0 chr6 82478021 82478060 -67038977 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 8 1214 443 343 11 0 chr6 82478060 82478238 -67038799 - B3A SINE B2 -17 181 2 8 1214 246 252 174 8 chr6 82479819 82479950 -67037087 - MER33 DNA MER1_type -11 313 161 8 1214 1038 237 71 81 chr6 82479950 82480322 -67036715 - MTE2a LTR MaLR 0 419 53 8 1214 257 303 101 0 chr6 82480376 82480475 -67036562 - MER33 DNA MER1_type -210 114 6 8 1214 260 191 0 16 chr6 82480672 82480736 -67036301 - RMER5 LTR ERV1 -30 504 442 8 1214 1305 206 152 9 chr6 82480785 82481128 -67035909 + MTD LTR MaLR 3 394 -25 8 1214 746 260 86 17 chr6 82481139 82481429 -67035608 - RMER5 LTR ERV1 -156 378 69 8 1214 414 0 0 0 chr6 82481546 82481592 -67035445 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1214 192 337 21 43 chr6 82482100 82482193 -67034844 - L2a LINE L2 0 3426 3336 8 1214 650 227 28 7 chr6 82482262 82482404 -67034633 - B1_Mur2 SINE Alu -2 147 3 8 1214 1129 213 15 0 chr6 82482482 82482684 -67034353 + B3 SINE B2 2 206 -10 9 1214 225 0 0 0 chr6 82483462 82483487 -67033550 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 9 1214 3055 83 2 10 chr6 82483487 82483889 -67033148 - MTB LTR MaLR -1 399 1 9 1214 943 229 24 5 chr6 82483890 82484096 -67032941 - B3 SINE B2 -6 210 1 9 1214 249 242 118 21 chr6 82484330 82484423 -67032614 - MER115 DNA Tip100 0 693 592 9 1214 255 311 27 0 chr6 82484863 82484937 -67032100 - MT2A LTR ERVL -114 419 344 9 1214 820 315 63 13 chr6 82484932 82485247 -67031790 - MT2A LTR ERVL -98 435 105 9 1214 273 179 44 15 chr6 82485255 82485323 -67031714 - MTC LTR MaLR -350 71 2 9 1214 1214 234 89 67 chr6 82485923 82486294 -67030743 + MTEa LTR MaLR 1 379 0 9 1214 288 0 0 0 chr6 82486440 82486472 -67030565 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1214 1077 256 35 96 chr6 82487582 82487980 -67029057 + MTE2a LTR MaLR 1 374 -5 9 1214 785 237 20 35 chr6 82488677 82488878 -67028159 - B3A SINE B2 0 198 1 9 1214 351 0 0 0 chr6 82489583 82489622 -67027415 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1214 279 274 0 0 chr6 82490039 82490112 -67026925 - ID4 SINE ID -3 80 8 9 1214 323 213 31 43 chr6 82490128 82490260 -67026777 - B1F SINE Alu -9 140 7 9 1214 265 286 39 0 chr6 82490379 82490456 -67026581 - MER81 DNA AcHobo 0 114 35 9 1214 824 248 98 102 chr6 82490658 82490793 -67026244 - MTEa LTR MaLR -73 306 171 9 1214 878 176 45 60 chr6 82490793 82490993 -67026044 + B3A SINE B2 2 198 0 9 1214 824 248 98 102 chr6 82490993 82491162 -67025875 - MTEa LTR MaLR -209 170 3 9 1214 330 139 0 0 chr6 82491204 82491276 -67025761 + (GA)n Simple_repeat Simple_repeat 1 72 0 9 1214 239 182 13 0 chr6 82491296 82491373 -67025664 + GA-rich Low_complexity Low_complexity 1 78 0 9 1214 252 0 0 0 chr6 82492015 82492043 -67024994 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1214 908 256 27 31 chr6 82492043 82492265 -67024772 - B4 SINE B4 -23 269 49 9 1214 285 224 265 0 chr6 82492409 82492507 -67024530 - RSINE1 SINE B4 -40 125 2 9 1214 339 198 48 36 chr6 82493164 82493248 -67023789 + B4 SINE B4 2 86 -206 9 1214 189 0 0 0 chr6 82493251 82493272 -67023765 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 9 1214 571 245 42 7 chr6 82493288 82493432 -67023605 - B3A SINE B2 -45 153 5 9 1214 282 73 0 0 chr6 82493494 82493535 -67023502 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1214 392 331 47 0 chr6 82494454 82494581 -67022456 - ID_B1 SINE B4 -8 216 84 9 1214 240 342 117 56 chr6 82494990 82495204 -67021833 + B4 SINE B4 3 229 -63 9 1214 538 248 0 24 chr6 82495207 82495331 -67021706 + RSINE1 SINE B4 4 124 -41 9 1214 1141 181 15 0 chr6 82495391 82495590 -67021447 + B3 SINE B2 9 210 -6 9 1214 314 179 11 0 chr6 82495700 82495795 -67021242 + GA-rich Low_complexity Low_complexity 2 97 0 9 1214 203 158 0 0 chr6 82496101 82496139 -67020898 + A-rich Low_complexity Low_complexity 5 42 0 9 1214 378 184 0 0 chr6 82498926 82499002 -67018035 + (CA)n Simple_repeat Simple_repeat 2 77 0 9 1214 546 193 247 39 chr6 82499383 82499561 -67017476 + B3 SINE B2 2 216 0 9 1214 568 303 123 28 chr6 82499563 82499994 -67017043 - L1MB4 LINE L1 -49 6131 5660 9 1214 333 62 0 0 chr6 82500098 82500146 -67016891 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1214 808 250 122 12 chr6 82500196 82500443 -67016594 - B4A SINE B4 -18 274 1 2 1214 243 284 57 0 chr6 82500667 82500755 -67016282 - MER74A LTR ERVL -445 113 21 3 1214 1128 247 26 0 chr6 82501108 82501375 -67015662 + B4A SINE B4 19 292 0 4 1214 409 100 8 84 chr6 82502003 82502088 -67014949 + B1_Mm SINE Alu 32 147 0 5 1214 1227 237 59 24 chr6 82502356 82502693 -67014344 + ORR1E LTR MaLR 1 349 -10 6 1214 458 234 18 47 chr6 82503166 82503336 -67013701 + (CATATA)n Simple_repeat Simple_repeat 6 170 0 7 1214 438 253 0 0 chr6 82503337 82503511 -67013526 + (CA)n Simple_repeat Simple_repeat 2 175 0 8 1214 201 258 15 29 chr6 82503515 82503583 -67013454 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 9 1214 374 226 0 48 chr6 82503596 82503782 -67013255 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 9 1214 411 217 28 17 chr6 82503842 82504020 -67013017 + (CATA)n Simple_repeat Simple_repeat 1 180 0 1 1214 437 296 201 49 chr6 82504048 82504336 -67012701 - MLT1A0 LTR MaLR -26 339 8 1 1214 200 288 40 27 chr6 82504638 82504713 -67012324 - MER5A DNA MER1_type -108 81 6 1 1214 216 0 0 0 chr6 82505196 82505220 -67011817 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1214 792 267 60 53 chr6 82505290 82505575 -67011462 - B4A SINE B4 0 292 6 1 1214 200 306 9 75 chr6 82505940 82506046 -67010991 - MIRb SINE MIR -48 220 122 1 1214 365 185 0 0 chr6 82506111 82506175 -67010862 - ORR1D2 LTR MaLR -5 369 306 1 1214 625 100 25 0 chr6 82506175 82506281 -67010756 + B1_Mus2 SINE Alu 1 120 0 1 1214 1078 251 56 33 chr6 82506288 82506593 -67010444 - ORR1D2 LTR MaLR -58 312 1 1 1214 193 333 40 20 chr6 82507879 82507980 -67009057 + MIR3 SINE MIR 104 206 -2 1 1214 600 14 0 0 chr6 82507993 82508062 -67008975 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1214 339 78 0 0 chr6 82508067 82508118 -67008919 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1214 306 0 0 0 chr6 82508119 82508153 -67008884 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1214 337 164 0 0 chr6 82508163 82508218 -67008819 + HAL1-3A_ME LINE L1 1976 2030 -828 2 1214 1992 143 32 15 chr6 82510484 82510855 -67006182 + ORR1A2 LTR MaLR 1 360 -14 2 1214 416 217 0 0 chr6 82510859 82510942 -67006095 + ORR1E LTR MaLR 55 137 -222 2 1214 385 156 74 111 chr6 82510950 82511058 -67005979 + ORR1E LTR MaLR 267 370 -4 2 1214 241 262 55 27 chr6 82512573 82512683 -67004354 - Lx8 LINE L1 -4 7469 7357 2 1214 485 309 0 8 chr6 82512688 82512815 -67004222 + Lx8 LINE L1 7167 7292 -181 2 1214 432 0 0 0 chr6 82513045 82513093 -67003944 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1214 1338 220 45 14 chr6 82513303 82513589 -67003448 - MTE2b LTR MaLR -13 366 72 2 1214 1515 240 97 48 chr6 82513600 82514087 -67002950 + Lx8 LINE L1 6922 7466 -7 2 1214 279 198 146 12 chr6 82514138 82514220 -67002817 - MTE2b LTR MaLR -286 93 1 2 1214 5281 39 9 8 chr6 82514651 82515291 -67001746 + L1Md_F2 LINE L1 5942 6582 0 2 1214 1284 213 107 40 chr6 82516679 82517026 -67000011 - ORR1D2 LTR MaLR 0 370 1 3 1214 1815 117 108 57 chr6 82517674 82518046 -66998991 + MTB_Mm LTR MaLR 5 395 -12 3 1214 476 255 45 96 chr6 82518338 82518494 -66998543 + RSINE1 SINE B4 12 159 -6 3 1214 990 175 297 18 chr6 82518529 82518857 -66998180 - MTD LTR MaLR 0 419 3 3 1214 1183 147 52 9 chr6 82520117 82520330 -66996707 + URR1B DNA MER1_type 1 222 -3 3 1214 526 237 83 5 chr6 82520466 82520682 -66996355 - Charlie5 DNA MER1_type -230 2394 2162 3 1214 360 129 0 0 chr6 82520709 82520757 -66996280 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1214 1170 88 0 0 chr6 82520757 82520905 -66996132 - B1_Mus1 SINE Alu 0 148 1 3 1214 360 129 0 0 chr6 82520905 82520918 -66996119 + (T)n Simple_repeat Simple_repeat 1 13 0 3 1214 2904 83 0 0 chr6 82520922 82521309 -66995728 - L1_Mus4 LINE L1 -4 6632 6246 3 1214 771 233 42 37 chr6 82521407 82521621 -66995416 + B3 SINE B2 2 216 0 4 1214 676 235 26 41 chr6 82521680 82521875 -66995162 + B3A SINE B2 2 193 -5 4 1214 2604 179 30 10 chr6 82521914 82522411 -66994626 + Lx9 LINE L1 6959 7465 -179 4 1214 615 130 0 0 chr6 82522414 82522514 -66994523 + (TA)n Simple_repeat Simple_repeat 2 101 0 4 1214 555 182 8 0 chr6 82522522 82522648 -66994389 + Lx9 LINE L1 7517 7643 -1 4 1214 500 259 13 52 chr6 82522674 82522829 -66994208 + B1_Mur1 SINE Alu 1 149 0 4 1214 919 79 0 0 chr6 82523360 82523487 -66993550 + B1_Mus1 SINE Alu 12 138 -10 4 1214 200 34 0 33 chr6 82523487 82523517 -66993520 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1214 460 272 32 0 chr6 82523536 82523661 -66993376 + RSINE1 SINE B4 17 145 -20 4 1214 213 65 0 0 chr6 82523710 82523741 -66993296 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1214 1023 241 5 0 chr6 82523754 82523970 -66993067 + ID_B1 SINE B4 4 220 -4 4 1214 213 39 0 0 chr6 82524508 82524534 -66992503 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 5 1214 548 255 14 7 chr6 82524534 82524680 -66992357 - Lx4B LINE L1 -19 7039 6893 5 1214 390 262 99 52 chr6 82525072 82525285 -66991752 + ORR1E LTR MaLR 32 254 -105 5 1214 632 262 60 22 chr6 82525711 82525894 -66991143 + B4A SINE B4 60 249 -43 5 1214 1073 87 0 0 chr6 82526076 82526214 -66990823 - B1_Mm SINE Alu -9 138 1 5 1214 235 254 120 24 chr6 82526231 82526356 -66990681 - Charlie20a DNA Charlie -509 298 162 5 1214 187 328 65 29 chr6 82526850 82526988 -66990049 + L4 LINE RTE 1662 1804 -225 5 1214 481 181 74 41 chr6 82526989 82527110 -66989927 + B3 SINE B2 74 198 -18 5 1214 964 182 11 5 chr6 82527110 82527298 -66989739 + MTC LTR MaLR 1 189 -232 5 1214 198 0 0 0 chr6 82527299 82527321 -66989716 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 5 1214 567 78 0 0 chr6 82527323 82527400 -66989637 + (GGGA)n Simple_repeat Simple_repeat 3 79 0 6 1214 1005 92 0 0 chr6 82527404 82527546 -66989491 + (GAAA)n Simple_repeat Simple_repeat 1 142 0 6 1214 1226 119 52 0 chr6 82527546 82527740 -66989297 + MTC LTR MaLR 209 412 -9 5 1214 464 252 93 36 chr6 82528102 82528242 -66988795 + ID_B1 SINE B4 2 149 -75 6 1214 247 247 26 64 chr6 82528173 82528251 -66988786 + PB1D10 SINE Alu 5 79 -38 6 1214 649 277 83 23 chr6 82528602 82528820 -66988217 + MLT2D LTR ERVL 99 329 -85 6 1214 1976 156 70 44 chr6 82528906 82529289 -66987748 - ORR1B1 LTR MaLR 0 394 2 6 1214 449 328 0 0 chr6 82529355 82529483 -66987554 - ID_B1 SINE B4 -11 213 86 6 1214 516 246 29 7 chr6 82529496 82529635 -66987402 - B1F SINE Alu -4 145 4 6 1214 528 59 0 0 chr6 82529967 82530035 -66987002 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 6 1214 1971 108 58 40 chr6 82530035 82530413 -66986624 + ORR1B1 LTR MaLR 2 386 -8 6 1214 702 297 42 13 chr6 82530416 82530440 -66986597 - B4A SINE B4 -46 246 222 7 1214 500 0 17 0 chr6 82530440 82530500 -66986537 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1214 871 270 34 0 chr6 82530500 82530714 -66986323 - B4 SINE B4 -71 221 1 7 1214 917 252 60 54 chr6 82530846 82531088 -66985949 + ORR1E LTR MaLR 4 237 -122 7 1214 1566 151 135 27 chr6 82531088 82531422 -66985615 - ORR1D1 LTR MaLR -2 372 3 7 1214 917 252 60 54 chr6 82531422 82531531 -66985506 + ORR1E LTR MaLR 238 357 -2 7 1214 760 168 229 109 chr6 82532393 82532733 -66984304 + ORR1C2 LTR MaLR 1 381 -3 7 1214 180 135 0 0 chr6 82532899 82532936 -66984101 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1214 731 247 24 70 chr6 82533035 82533083 -66983954 - B3 SINE B2 -13 203 167 7 1214 423 0 0 0 chr6 82533083 82533130 -66983907 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1214 279 0 0 0 chr6 82533130 82533160 -66983877 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1214 762 238 25 3 chr6 82533160 82533323 -66983714 - B3A SINE B2 -50 166 1 7 1214 193 157 39 0 chr6 82533693 82533720 -66983317 + polypurine Low_complexity Low_complexity 2 29 0 7 1214 3158 68 23 2 chr6 82533720 82534117 -66982920 - MTB_Mm LTR MaLR 0 407 3 8 1214 193 157 39 0 chr6 82534117 82534140 -66982897 + polypurine Low_complexity Low_complexity 30 53 0 8 1214 306 0 0 0 chr6 82534333 82534367 -66982670 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1214 642 26 0 0 chr6 82534367 82534442 -66982595 + (GA)n Simple_repeat Simple_repeat 1 76 0 8 1214 896 271 49 38 chr6 82534445 82534733 -66982304 - B4A SINE B4 0 292 2 8 1214 383 208 7 27 chr6 82535108 82535256 -66981781 + CT-rich Low_complexity Low_complexity 1 145 0 8 1214 9986 55 7 0 chr6 82535674 82537575 -66979462 - L1Md_F2 LINE L1 -12 6570 4657 8 1214 15122 52 0 0 chr6 82537575 82539448 -66977589 + L1Md_F2 LINE L1 2775 4647 -1236 8 1214 34 19 0 36 chr6 82539805 82539834 -66977203 + AT_rich Low_complexity Low_complexity 1 29 0 8 1214 858 129 30 0 chr6 82539834 82539966 -66977071 + B1_Mur4 SINE Alu 5 140 -10 8 1214 34 19 0 36 chr6 82539966 82539992 -66977045 + AT_rich Low_complexity Low_complexity 1 25 0 8 1214 1762 188 24 4 chr6 82540053 82540500 -66976537 + Lx4B LINE L1 6491 6957 -19 9 1214 261 0 0 0 chr6 82540503 82540532 -66976505 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 9 1214 1445 234 99 8 chr6 82540532 82540907 -66976130 + Lx8 LINE L1 7001 7409 -64 9 1214 1487 272 36 15 chr6 82540942 82541195 -66975842 - RMER20A LTR ERVK -3 513 257 9 1214 2252 100 18 15 chr6 82541195 82541521 -66975516 + ORR1A2 LTR MaLR 1 327 0 9 1214 1487 272 36 15 chr6 82541521 82541740 -66975297 - RMER20A LTR ERVK -260 256 31 9 1214 1962 152 120 18 chr6 82542149 82542550 -66974487 + RMER10A LTR ERVL 1 442 0 9 1214 311 195 182 0 chr6 82542773 82542850 -66974187 + B1_Mus2 SINE Alu 51 141 -6 9 1214 207 0 0 0 chr6 82542851 82542874 -66974163 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 9 1214 303 154 0 0 chr6 82543215 82543280 -66973757 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 9 1214 360 176 18 36 chr6 82543282 82543394 -66973643 + (CATA)n Simple_repeat Simple_repeat 1 110 0 9 1214 234 0 0 0 chr6 82543635 82543661 -66973376 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1214 255 347 11 0 chr6 82543732 82543827 -66973210 - L2a LINE L2 -4 3422 3327 1 1214 377 323 24 0 chr6 82543948 82544075 -66972962 + MER58A DNA MER1_type 26 155 -69 1 1214 339 366 25 37 chr6 82544229 82544470 -66972567 - MLT1J1 LTR MaLR -142 302 65 1 1214 246 359 13 0 chr6 82544969 82545047 -66971990 - LTR16C LTR ERVL -371 118 40 1 1214 1430 175 101 48 chr6 82546257 82546403 -66970634 - ORR1D1 LTR MaLR 0 374 236 1 1214 2242 137 93 36 chr6 82546403 82546497 -66970540 - RMER4A LTR ERVK 0 466 371 1 1214 432 0 0 0 chr6 82546497 82546545 -66970492 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1214 2242 137 93 36 chr6 82546545 82546891 -66970146 - RMER4A LTR ERVK -96 370 1 1 1214 1430 175 101 48 chr6 82546891 82547099 -66969938 - ORR1D1 LTR MaLR -139 235 1 1 1214 916 261 17 12 chr6 82547130 82547371 -66969666 - B4 SINE B4 -44 248 7 1 1214 548 208 72 44 chr6 82547399 82547580 -66969457 + L1M2 LINE L1 5346 5531 -781 1 1214 400 270 173 6 chr6 82547627 82547806 -66969231 - L1M2 LINE L1 -814 5329 5121 1 1214 621 170 0 0 chr6 82548051 82548192 -66968845 + CT-rich Low_complexity Low_complexity 2 142 0 1 1214 238 258 0 31 chr6 82548322 82548386 -66968651 + MTEb LTR MaLR 294 355 -24 1 1214 984 289 53 33 chr6 82548410 82548865 -66968172 - L1M2 LINE L1 -1043 5100 4637 1 1214 245 306 45 57 chr6 82549313 82549522 -66967515 + MIR3 SINE MIR 35 260 -8 1 1214 548 297 41 124 chr6 82549638 82549792 -66967245 - MLT1B LTR MaLR -15 375 229 1 1214 618 203 110 22 chr6 82549792 82549928 -66967109 - B1_Mur1 SINE Alu 0 149 2 1 1214 548 297 41 124 chr6 82549928 82550135 -66966902 - MLT1B LTR MaLR -162 228 44 1 1214 359 243 79 22 chr6 82550422 82550561 -66966476 - RMER15 LTR ERVL -24 551 405 1 1214 951 177 57 38 chr6 82551162 82551289 -66965748 + B3 SINE B2 1 124 -92 1 1214 8449 32 6 0 chr6 82551289 82552261 -66964776 - RLTR13A3 LTR ERVK 0 978 1 1 1214 951 177 57 38 chr6 82552261 82552344 -66964693 + B3 SINE B2 125 215 -1 1 1214 1232 61 0 0 chr6 82552367 82552514 -66964523 - B1_Mm SINE Alu 0 147 1 1 1214 285 364 28 24 chr6 82552738 82552991 -66964046 - L1M5 LINE L1 -303 5821 5568 1 1214 349 167 25 0 chr6 82554381 82554501 -66962536 + (TCTG)n Simple_repeat Simple_repeat 4 126 0 1 1214 1015 236 13 22 chr6 82554622 82554847 -66962190 - B4 SINE B4 -69 223 1 1 1214 266 0 29 0 chr6 82555315 82555349 -66961688 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1214 578 233 33 117 chr6 82555361 82555575 -66961462 + B3A SINE B2 3 198 0 1 1214 721 156 72 22 chr6 82555582 82555720 -66961317 + B1_Mur3 SINE Alu 4 148 -1 1 1214 329 331 84 7 chr6 82555971 82556126 -66960911 + ID_B1 SINE B4 58 224 0 1 1214 270 278 14 0 chr6 82556143 82556215 -66960822 + ID4_ SINE ID 1 73 -10 1 1214 279 0 0 0 chr6 82556322 82556353 -66960684 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1214 245 311 90 8 chr6 82556604 82556734 -66960303 + L2c LINE L2 3233 3350 -25 1 1214 677 294 67 31 chr6 82556753 82556975 -66960062 + B4A SINE B4 1 230 -62 1 1214 493 272 38 70 chr6 82556975 82557161 -66959876 + B3A SINE B2 1 180 -18 1 1214 702 0 0 0 chr6 82557207 82557285 -66959752 + (AATAG)n Simple_repeat Simple_repeat 3 80 0 1 1214 23 0 0 0 chr6 82557993 82558016 -66959021 + AT_rich Low_complexity Low_complexity 1 23 0 1 1214 378 74 0 0 chr6 82558082 82558136 -66958901 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1214 195 42 0 0 chr6 82558136 82558160 -66958877 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1214 571 278 141 16 chr6 82558585 82558834 -66958203 + B4A SINE B4 13 292 0 1 1214 348 24 0 0 chr6 82558858 82558899 -66958138 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1214 514 242 169 7 chr6 82558899 82559053 -66957984 - B3 SINE B2 -30 186 8 1 1214 198 91 0 0 chr6 82559053 82559086 -66957951 + (CTG)n Simple_repeat Simple_repeat 1 33 0 1 1214 24 0 0 0 chr6 82560042 82560066 -66956971 + AT_rich Low_complexity Low_complexity 1 24 0 1 1214 5007 85 6 6 chr6 82560143 82560838 -66956199 + L1_Mus3 LINE L1 5944 6638 0 1 1214 207 0 0 0 chr6 82560839 82560862 -66956175 + (GGAAA)n Simple_repeat Simple_repeat 3 25 0 1 1214 346 205 269 26 chr6 82560886 82561046 -66955991 + Lx8 LINE L1 6946 7144 -329 1 1214 4476 187 109 40 chr6 82561062 82562068 -66954969 + RMER1A Other Other 3 1028 -2 1 1214 465 237 15 30 chr6 82562074 82562209 -66954828 + Lx8 LINE L1 7135 7267 -206 1 1214 393 237 93 0 chr6 82562499 82562596 -66954441 - ID_B1 SINE B4 -3 221 116 1 1214 245 306 152 8 chr6 82562502 82562627 -66954410 - B1F1 SINE Alu -6 143 1 1 1214 431 196 25 93 chr6 82562738 82562856 -66954181 - MTC LTR MaLR -2 419 310 1 1214 1297 204 253 102 chr6 82562858 82563321 -66953716 - MT2A LTR ERVL 0 533 1 1 1214 3360 187 38 52 chr6 82563324 82564125 -66952912 + ORR1C2-int LTR MaLR 582 1370 0 1 1214 1587 189 93 39 chr6 82564125 82564489 -66952548 + ORR1C2 LTR MaLR 1 384 0 1 1214 349 136 17 0 chr6 82564489 82564548 -66952489 + ORR1C2-int LTR MaLR 1 60 -1449 1 1214 415 304 44 0 chr6 82564613 82564771 -66952266 + L1MB4 LINE L1 5974 6138 -42 1 1214 950 234 9 14 chr6 82565828 82566045 -66950992 + ID_B1 SINE B4 4 219 -5 1 1214 541 96 21 0 chr6 82566046 82566140 -66950897 + (TAGA)n Simple_repeat Simple_repeat 1 96 0 1 1214 674 134 104 0 chr6 82566195 82566329 -66950708 + Lx7 LINE L1 5684 5831 -1865 1 1214 270 0 0 0 chr6 82566329 82566359 -66950678 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1214 1414 200 190 27 chr6 82566379 82566826 -66950211 + RMER19B LTR ERVK 1 520 -382 1 1214 13448 69 16 25 chr6 82566826 82568783 -66948254 + MusHAL1 LINE L1 148 2086 -626 1 1214 2383 132 38 6 chr6 82568860 82569355 -66947682 + RMER4B LTR ERVK 33 585 0 1 1214 3159 202 23 101 chr6 82569358 82570169 -66946868 + Lx7 LINE L1 6949 7696 0 1 1214 234 62 0 0 chr6 82570351 82570383 -66946654 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1214 2249 121 53 3 chr6 82570383 82570724 -66946313 - Lx3C LINE L1 -7 6969 6612 1 1214 5634 83 11 27 chr6 82571083 82571872 -66945165 - Lx3C LINE L1 -359 6617 5841 1 1214 3412 78 0 0 chr6 82572417 82572863 -66944174 + L1Md_T LINE L1 6137 6582 0 1 1214 2226 62 88 7 chr6 82572901 82573207 -66943830 - L1Md_F2 LINE L1 -15 6567 6237 1 1214 1333 78 0 0 chr6 82573207 82573374 -66943663 + L1Md_F2 LINE L1 6024 6190 -392 1 1214 776 169 0 0 chr6 82573391 82573521 -66943516 + B3 SINE B2 1 130 -86 1 1214 21 36 0 0 chr6 82573533 82573561 -66943476 + AT_rich Low_complexity Low_complexity 1 28 0 1 1214 354 312 75 40 chr6 82573947 82574174 -66942863 + L1M5 LINE L1 4441 4675 -1471 1 1214 977 258 43 11 chr6 82574211 82574489 -66942548 - B4A SINE B4 -5 287 1 1 1214 339 159 32 0 chr6 82574538 82574601 -66942436 + MTC LTR MaLR 4 68 -339 1 1214 291 86 365 18 chr6 82574595 82574702 -66942335 - B2_Mm2 SINE B2 -5 190 47 1 1214 1247 93 35 0 chr6 82574753 82574925 -66942112 - B2_Mm1t SINE B2 -14 179 2 1 1214 1047 137 0 0 chr6 82574932 82575093 -66941944 + MTC LTR MaLR 49 209 -212 1 1214 429 232 0 0 chr6 82575108 82575190 -66941847 + B1_Mus2 SINE Alu 44 125 -22 1 1214 201 121 0 0 chr6 82575205 82575238 -66941799 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 1 1214 324 0 0 0 chr6 82575246 82575282 -66941755 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1 151 582 15 0 0 chr6 82575295 82575362 -66941675 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 1 1215 1088 151 63 0 chr6 82575362 82575568 -66941469 + MTC LTR MaLR 203 421 0 1 1215 36166 35 0 0 chr6 82575601 82581260 -66935777 + L1Md_T LINE L1 1 5589 -297 1 1215 9161 4 0 1 chr6 82581260 82582257 -66934780 + L1Md_T LINE L1 5590 6585 0 1 1215 963 250 69 32 chr6 82583027 82583304 -66933733 + B4 SINE B4 6 292 0 1 1215 253 242 66 0 chr6 82583284 82583375 -66933662 - RMER12 LTR ERVK -478 844 748 1 1215 240 35 0 0 chr6 82583444 82583473 -66933564 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1215 228 324 209 0 chr6 82584119 82584258 -66932779 - MamRep605 Unknown Unknown -58 818 651 1 1215 230 318 25 91 chr6 82584465 82584586 -66932451 - PB1D7 SINE Alu -3 117 5 1 1215 660 315 27 0 chr6 82584479 82584663 -66932374 - ID_B1 SINE B4 -32 192 4 1 1215 2148 131 0 65 chr6 82584723 82585075 -66931962 + ORR1A4 LTR MaLR 1 329 0 1 1215 21 0 0 0 chr6 82585105 82585126 -66931911 + AT_rich Low_complexity Low_complexity 1 21 0 1 1215 589 242 0 8 chr6 82585897 82586030 -66931007 - ID_B1 SINE B4 0 224 93 1 1215 1390 246 27 93 chr6 82586088 82586222 -66930815 + Lx8 LINE L1 6212 6338 -1135 1 1215 824 194 0 7 chr6 82586222 82586362 -66930675 + B1_Mur4 SINE Alu 4 142 -8 1 1215 1390 246 27 93 chr6 82586362 82586594 -66930443 + Lx8 LINE L1 6339 6554 -919 1 1215 1654 21 0 16 chr6 82586615 82586808 -66930229 - B2_Mm1t SINE B2 -2 191 2 1 1215 1493 238 131 26 chr6 82586818 82587276 -66929761 - RLTR20D LTR ERVK -12 556 51 1 1215 1542 273 157 8 chr6 82587291 82587782 -66929255 + Lx8 LINE L1 6553 7116 -357 1 1215 441 0 0 0 chr6 82587782 82587831 -66929206 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1215 598 155 155 0 chr6 82587847 82587963 -66929074 + B1_Mus1 SINE Alu 1 134 -14 1 1215 228 219 24 12 chr6 82587963 82588046 -66928991 + GA-rich Low_complexity Low_complexity 2 85 0 1 1215 35 24 0 0 chr6 82588161 82588203 -66928834 + AT_rich Low_complexity Low_complexity 1 42 0 1 1215 1212 250 100 14 chr6 82588274 82588623 -66928414 + MTD LTR MaLR 1 379 -40 1 1215 267 54 0 0 chr6 82588993 82589030 -66928007 + (TATG)n Simple_repeat Simple_repeat 3 39 0 1 1215 271 98 58 19 chr6 82589042 82589094 -66927943 - B2_Mm2 SINE B2 -95 100 47 1 1215 1087 98 98 0 chr6 82589148 82589311 -66927726 - B2_Mm1t SINE B2 -13 180 2 1 1215 481 235 180 7 chr6 82589353 82589503 -66927534 + ID_B1 SINE B4 41 216 -8 1 1215 545 198 9 0 chr6 82589512 82589618 -66927419 + B3A SINE B2 1 107 -91 1 1215 200 0 0 91 chr6 82589618 82589651 -66927386 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1 1215 373 230 87 22 chr6 82589658 82589796 -66927241 - RMER10B LTR ERVL -58 340 194 1 1215 392 171 12 0 chr6 82589800 82589882 -66927155 + G-rich Low_complexity Low_complexity 4 86 0 1 1215 220 218 72 60 chr6 82589883 82589966 -66927071 + B3A SINE B2 99 182 -16 1 1215 257 217 67 0 chr6 82590353 82590413 -66926624 + L1M5 LINE L1 5409 5472 -707 2 1215 227 221 29 78 chr6 82590750 82590853 -66926184 + MT2B LTR ERVL 167 264 -337 2 1215 464 171 0 0 chr6 82590780 82590868 -66926169 + B1_Mur4 SINE Alu 43 130 -20 2 1215 322 214 87 121 chr6 82590941 82591090 -66925947 - MLT1E2 LTR MaLR -432 195 52 2 1215 328 220 175 29 chr6 82591215 82591318 -66925719 - PB1D9 SINE Alu -2 118 1 2 1215 1004 206 41 31 chr6 82591354 82591549 -66925488 - B3 SINE B2 -19 197 1 2 1215 904 153 0 0 chr6 82591618 82591755 -66925282 - B1_Mus2 SINE Alu -8 139 3 2 1215 490 289 162 30 chr6 82591885 82592120 -66924917 + B4A SINE B4 27 292 0 2 1215 816 266 22 47 chr6 82592429 82592705 -66924332 + RLTR20D LTR ERVK 1 269 -299 2 1215 666 0 0 0 chr6 82592741 82592815 -66924222 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1215 277 218 65 65 chr6 82593110 82593218 -66923819 + MYSERV16_I-int LTR ERVK 572 679 -2163 2 1215 3941 203 61 61 chr6 82593701 82594203 -66922834 + MYSERV16_I-int LTR ERVK 1 365 -1961 2 1215 1241 41 0 0 chr6 82594203 82594350 -66922687 + B1_Mus2 SINE Alu 1 147 0 2 1215 3941 187 78 56 chr6 82594350 82594951 -66922086 + MYSERV16_I-int LTR ERVK 366 969 -1357 2 1215 4656 174 75 33 chr6 82594964 82596090 -66920947 + MYSERV16_I-int LTR ERVK 1154 2326 0 2 1215 732 271 96 11 chr6 82596090 82596351 -66920686 + RLTR20D LTR ERVK 1 283 -285 2 1215 424 268 103 21 chr6 82596341 82596486 -66920551 + RLTR20D LTR ERVK 422 578 0 2 1215 609 276 21 16 chr6 82597134 82597322 -66919715 + L1MB3 LINE L1 5991 6179 -4 2 1215 255 212 72 36 chr6 82597440 82597523 -66919514 + L1MB7 LINE L1 6089 6174 -10 2 1215 505 260 124 36 chr6 82598371 82598560 -66918477 - B3A SINE B2 -23 193 1 2 1215 868 134 200 16 chr6 82598831 82599021 -66918016 + URR1B DNA MER1_type 1 225 0 2 1215 405 261 61 8 chr6 82599542 82599673 -66917364 - B1F SINE Alu -10 139 2 2 1215 23 33 0 0 chr6 82599715 82599745 -66917292 + AT_rich Low_complexity Low_complexity 1 30 0 2 1215 277 262 109 51 chr6 82600002 82600139 -66916898 + L1M5 LINE L1 2444 2588 -3558 2 1215 380 298 81 24 chr6 82600453 82600476 -66916561 + B1F SINE Alu 9 139 -10 2 1215 510 222 40 20 chr6 82600476 82600577 -66916460 + ID_B1 SINE B4 112 214 -10 2 1215 222 154 0 0 chr6 82600587 82600626 -66916411 + B3A SINE B2 1 39 -159 2 1215 1203 62 0 0 chr6 82600626 82600772 -66916265 + B1_Mus1 SINE Alu 1 146 -2 2 1215 897 129 0 58 chr6 82600799 82600955 -66916082 + B1_Mur4 SINE Alu 4 150 0 2 1215 243 219 162 74 chr6 82600964 82601112 -66915925 + B3A SINE B2 27 187 -8 2 1215 1139 49 21 0 chr6 82601719 82601862 -66915175 + B1_Mus2 SINE Alu 2 147 0 2 1215 1184 54 0 0 chr6 82603463 82603610 -66913427 + B1_Mus1 SINE Alu 2 148 0 2 1215 322 239 172 40 chr6 82603652 82603790 -66913247 - Charlie1b DNA MER1_type -283 240 80 2 1215 546 255 42 7 chr6 82603790 82603932 -66913105 + B1_Mur1 SINE Alu 3 149 0 2 1215 322 239 172 40 chr6 82603932 82603967 -66913070 - Charlie1b DNA MER1_type -444 79 45 2 1215 467 258 116 29 chr6 82604055 82604227 -66912810 + B4A SINE B4 3 189 -103 2 1215 408 264 0 0 chr6 82605331 82605422 -66911615 - B1F SINE Alu -58 91 1 2 1215 222 189 0 19 chr6 82605931 82605985 -66911052 + PB1D10 SINE Alu 63 115 -2 2 1215 243 0 0 0 chr6 82606274 82606301 -66910736 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1215 326 274 71 0 chr6 82606332 82606416 -66910621 - B3A SINE B2 -108 90 1 2 1215 208 188 0 20 chr6 82606441 82606490 -66910547 + T-rich Low_complexity Low_complexity 2 49 0 2 1215 1105 170 54 29 chr6 82607462 82607704 -66909333 - ORR1D1 LTR MaLR 0 374 127 2 1215 265 191 156 16 chr6 82607704 82607768 -66909269 + Lx6 LINE L1 6260 6332 -1128 2 1215 1830 142 23 0 chr6 82607768 82608071 -66908966 + ORR1B1 LTR MaLR 1 310 -84 2 1215 526 115 0 0 chr6 82608226 82608304 -66908733 + ORR1B1 LTR MaLR 282 359 -8 2 1215 3160 181 4 17 chr6 82608308 82608843 -66908194 + Lx7 LINE L1 6339 6866 -830 2 1215 2282 12 0 0 chr6 82608843 82609091 -66907946 + MERVL-int LTR ERVL 3451 3698 -1787 2 1215 776 139 13 0 chr6 82609091 82609242 -66907795 + ORR1B1-int LTR MaLR 623 775 -1017 2 1215 2734 22 1 0 chr6 82609234 82609581 -66907456 + ORR1B1-int LTR MaLR 1431 1766 -26 2 1215 1614 182 32 3 chr6 82609581 82609889 -66907148 + Lx7 LINE L1 6880 7196 -500 2 1215 335 211 144 0 chr6 82609884 82609974 -66907063 - Lx7 LINE L1 -362 7334 7232 2 1215 514 214 55 7 chr6 82609971 82610117 -66906920 + Lx7 LINE L1 7543 7695 -1 2 1215 511 208 120 0 chr6 82610128 82610253 -66906784 - ORR1D1 LTR MaLR -236 142 3 2 1215 8516 170 51 5 chr6 82610708 82612155 -66904882 - MERVL_2A-int LTR ERVL -823 4938 3425 2 1215 2002 163 51 8 chr6 82612731 82613083 -66903954 + ORR1B2 LTR MaLR 1 367 0 2 1215 550 321 30 40 chr6 82613205 82613403 -66903634 + RMER15 LTR ERVL 340 535 -40 2 1215 2711 173 48 19 chr6 82613462 82613980 -66903057 - RMER5 LTR ERV1 -1 533 1 2 1215 2323 145 9 81 chr6 82614052 82614423 -66902614 + ORR1B1 LTR MaLR 1 347 -47 2 1215 3521 33 0 0 chr6 82614423 82614819 -66902218 - MTA_Mm LTR MaLR 0 396 1 2 1215 2323 145 9 81 chr6 82614819 82614868 -66902169 + ORR1B1 LTR MaLR 348 391 -3 2 1215 3714 162 9 25 chr6 82614871 82615521 -66901516 + ORR1B1-int LTR MaLR 1 640 -1323 2 1215 1040 247 50 91 chr6 82615564 82615862 -66901175 + MT2B LTR ERVL 2 287 -314 2 1215 2866 183 25 20 chr6 82615821 82616430 -66900607 + ORR1B1-int LTR MaLR 718 1329 -634 2 1215 1890 126 41 99 chr6 82616391 82616753 -66900284 - ORR1B2 LTR MaLR -26 341 1 2 1215 21 36 0 0 chr6 82617325 82617353 -66899684 + AT_rich Low_complexity Low_complexity 1 28 0 2 1215 8321 68 6 0 chr6 82617371 82618478 -66898559 + L1_Mus3 LINE L1 5519 6631 -7 2 1215 23 33 0 0 chr6 82618481 82618511 -66898526 + AT_rich Low_complexity Low_complexity 1 30 0 2 1215 22 56 0 0 chr6 82618654 82618690 -66898347 + AT_rich Low_complexity Low_complexity 1 36 0 2 1215 279 0 0 0 chr6 82618904 82618935 -66898102 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1215 1163 88 0 0 chr6 82618935 82619083 -66897954 - B1_Mus1 SINE Alu 0 148 1 2 1215 360 0 0 0 chr6 82619292 82619332 -66897705 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1215 446 325 25 8 chr6 82619332 82619450 -66897587 - RSINE1 SINE B4 -41 124 5 2 1215 577 249 41 36 chr6 82619474 82619670 -66897367 - B3A SINE B2 -1 197 1 2 1215 397 261 210 0 chr6 82619711 82619830 -66897207 + ID_B1 SINE B4 76 219 -5 2 1215 1038 135 126 1 chr6 82619886 82620055 -66896982 + RLTR11A LTR ERVK 1 187 -341 2 1215 2166 98 65 0 chr6 82620055 82620362 -66896675 - ORR1A2 LTR MaLR 0 327 1 2 1215 532 145 13 0 chr6 82620362 82620438 -66896599 + RLTR11A LTR ERVK 172 224 -353 2 1215 2579 211 10 103 chr6 82620448 82621076 -66895961 - RMER19C LTR ERVK -42 569 1 2 1215 422 146 12 0 chr6 82621184 82621266 -66895771 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 1215 643 250 34 7 chr6 82621536 82621685 -66895352 + RSINE1 SINE B4 7 159 -6 2 1215 743 184 79 29 chr6 82622200 82622340 -66894697 + B1_Mur4 SINE Alu 2 148 -2 2 1215 439 211 279 19 chr6 82622358 82622528 -66894509 + B3A SINE B2 1 216 0 2 1215 333 282 60 60 chr6 82622607 82622724 -66894313 + B4 SINE B4 2 118 -174 2 1215 539 272 109 29 chr6 82622854 82622958 -66894079 + B4 SINE B4 101 222 -70 2 1215 414 0 0 0 chr6 82622958 82623004 -66894033 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 2 1215 539 272 109 29 chr6 82623004 82623073 -66893964 + B4 SINE B4 223 288 -4 2 1215 252 77 0 0 chr6 82623106 82623145 -66893892 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1215 1712 199 80 35 chr6 82623224 82623329 -66893708 + MTD LTR MaLR 1 113 -306 2 1215 833 189 15 50 chr6 82623329 82623530 -66893507 - B2_Mm2 SINE B2 0 195 2 2 1215 1712 199 80 35 chr6 82623530 82623825 -66893212 + MTD LTR MaLR 114 419 0 2 1215 528 225 50 0 chr6 82624028 82624148 -66892889 - RSINE1 SINE B4 -38 127 2 2 1215 626 227 45 15 chr6 82624355 82624489 -66892548 + MTD LTR MaLR 137 274 -145 2 1215 908 267 57 32 chr6 82624486 82624647 -66892390 - B4 SINE B4 -38 254 94 2 1215 378 0 0 0 chr6 82624647 82624689 -66892348 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1215 908 267 57 32 chr6 82624689 82624775 -66892262 - B4 SINE B4 -199 93 2 2 1215 259 76 0 96 chr6 82625237 82625310 -66891727 + CT-rich Low_complexity Low_complexity 5 70 0 2 1215 3125 66 0 12 chr6 82625587 82625988 -66891049 + MTA_Mm LTR MaLR 1 396 0 2 1215 2179 165 24 13 chr6 82626868 82627242 -66889795 - ORR1C1 LTR MaLR 0 378 1 2 1215 760 221 7 0 chr6 82627676 82627825 -66889212 - B1_Mur4 SINE Alu 0 150 1 2 1215 292 118 0 38 chr6 82627829 82627908 -66889129 + T-rich Low_complexity Low_complexity 3 78 0 2 1215 1196 74 0 0 chr6 82627910 82628058 -66888979 - B1_Mus1 SINE Alu 0 148 1 2 1215 7571 64 15 14 chr6 82628196 82629364 -66887673 - L1Md_F2 LINE L1 -2 6580 5409 2 1215 735 231 80 25 chr6 82629372 82629572 -66887465 - B3 SINE B2 -1 215 5 2 1215 197 33 33 0 chr6 82629645 82629675 -66887362 + (TATG)n Simple_repeat Simple_repeat 1 31 0 2 1215 441 0 0 0 chr6 82630428 82630477 -66886560 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1215 369 0 0 0 chr6 82630916 82630957 -66886080 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1215 2760 162 142 40 chr6 82631754 82632445 -66884592 - RMER17A LTR ERVK -3 748 1 2 1215 276 353 13 32 chr6 82632626 82632781 -66884256 + MLT1B LTR MaLR 117 268 -122 2 1215 423 0 0 0 chr6 82633065 82633112 -66883925 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1215 301 113 0 61 chr6 82635868 82635934 -66881103 + G-rich Low_complexity Low_complexity 2 63 0 2 1215 2492 190 128 16 chr6 82638604 82639181 -66877856 + RLTR26 LTR ERVK 1 642 0 2 1215 4997 86 80 30 chr6 82639247 82639994 -66877043 + MERVK26-int LTR ERVK 124 908 -6011 2 1215 2102 148 8 25 chr6 82640161 82640521 -66876516 - ORR1B1 LTR MaLR 0 394 41 2 1215 318 310 66 97 chr6 82640539 82640796 -66876241 - ORR1D2 LTR MaLR -19 351 103 2 1215 1011 215 27 0 chr6 82640797 82640983 -66876054 + B3 SINE B2 21 211 -5 2 1215 297 269 209 13 chr6 82641045 82641171 -66875866 + B2_Mm2 SINE B2 3 138 -57 2 1215 357 24 0 0 chr6 82641171 82641213 -66875824 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1215 297 269 209 13 chr6 82641213 82641244 -66875793 + B2_Mm2 SINE B2 139 191 -4 2 1215 234 0 0 0 chr6 82641900 82641926 -66875111 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 2 1215 968 295 43 18 chr6 82641977 82642253 -66874784 - B4A SINE B4 -2 290 8 2 1215 182 292 0 40 chr6 82642327 82642377 -66874660 - L2 LINE L2 -1030 2389 2342 2 1215 213 39 0 0 chr6 82642743 82642769 -66874268 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1215 717 206 8 8 chr6 82642902 82643034 -66874003 + ID_B1 SINE B4 70 201 -23 3 1215 194 0 0 37 chr6 82643243 82643270 -66873767 + (CCCCCA)n Simple_repeat Simple_repeat 4 29 0 3 1215 449 353 62 57 chr6 82643314 82643650 -66873387 + MamRep605 Unknown Unknown 407 744 -132 3 1215 263 329 57 117 chr6 82644206 82644488 -66872549 - MLT1A0 LTR MaLR -85 280 16 3 1215 201 143 0 0 chr6 82644974 82645009 -66872028 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 3 1215 566 200 240 35 chr6 82645273 82645444 -66871593 + ORR1D2-int LTR MaLR 1304 1509 0 3 1215 1138 221 45 73 chr6 82645444 82645825 -66871212 + ORR1D2 LTR MaLR 1 370 0 3 1215 739 327 64 40 chr6 82645827 82646155 -66870882 + MLT1B LTR MaLR 46 381 -9 3 1215 257 291 217 12 chr6 82646445 82646689 -66870348 + L2a LINE L2 2066 2359 -1060 3 1215 1600 154 29 59 chr6 82646690 82647048 -66869989 - ORR1A4 LTR MaLR -58 316 1 3 1215 715 272 73 27 chr6 82647202 82647463 -66869574 + B4A SINE B4 2 274 -18 3 1215 240 35 0 0 chr6 82647603 82647632 -66869405 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1215 414 0 0 0 chr6 82647632 82647677 -66869360 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1215 2716 148 36 61 chr6 82647768 82648343 -66868694 + RLTR31_Mm LTR ERVK 1 561 0 3 1215 333 0 0 0 chr6 82648439 82648476 -66868561 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1215 547 324 124 26 chr6 82648503 82648874 -66868163 + MLT1G3 LTR MaLR 7 446 -149 3 1215 308 293 10 20 chr6 82648864 82648965 -66868072 + MLT1H2 LTR MaLR 390 489 0 3 1215 232 268 0 90 chr6 82649061 82649139 -66867898 + L2a LINE L2 3356 3426 0 3 1215 30 69 0 0 chr6 82649186 82649244 -66867793 + AT_rich Low_complexity Low_complexity 1 58 0 3 1215 624 282 42 0 chr6 82649271 82649292 -66867745 + B1F2 SINE Alu 1 148 -1 3 1215 722 215 0 0 chr6 82649292 82649413 -66867624 + ID_B1 SINE B4 103 223 -1 3 1215 600 239 51 0 chr6 82649421 82649559 -66867478 + B3A SINE B2 3 147 -51 3 1215 219 36 0 0 chr6 82649559 82649587 -66867450 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1215 189 107 0 0 chr6 82649650 82649678 -66867359 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 3 1215 341 229 11 117 chr6 82650500 82650594 -66866443 + B4 SINE B4 1 84 -208 3 1215 505 255 0 0 chr6 82651136 82651238 -66865799 - RSINE1 SINE B4 -62 103 2 3 1215 270 0 0 0 chr6 82651245 82651275 -66865762 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1215 567 258 15 52 chr6 82651275 82651382 -66865655 - B4 SINE B4 -77 215 111 3 1215 1912 175 119 41 chr6 82651382 82651794 -66865243 + RLTR41 LTR ERV1 1 444 -2 3 1215 567 258 15 52 chr6 82651794 82651821 -66865216 - B4 SINE B4 -182 110 86 3 1215 1023 71 50 7 chr6 82651852 82651993 -66865044 - B1_Mus1 SINE Alu -1 147 1 3 1215 603 223 114 51 chr6 82652022 82652158 -66864879 + B2_Mm2 SINE B2 2 136 -59 3 1215 207 0 0 0 chr6 82652158 82652181 -66864856 + (CATA)n Simple_repeat Simple_repeat 4 26 0 3 1215 603 223 114 51 chr6 82652181 82652219 -66864818 + B2_Mm2 SINE B2 137 187 -8 3 1215 578 247 66 39 chr6 82652221 82652402 -66864635 - B3A SINE B2 -11 187 2 3 1215 621 200 0 0 chr6 82652969 82653079 -66863958 + ID_B1 SINE B4 113 222 -2 3 1215 228 250 207 78 chr6 82653111 82653367 -66863670 + B4A SINE B4 4 292 0 3 1215 1911 193 60 28 chr6 82653908 82654344 -66862693 + RMER20A LTR ERVK 13 462 -54 3 1215 651 161 18 18 chr6 82654377 82654491 -66862546 - B1F2 SINE Alu -1 148 35 3 1215 522 269 0 84 chr6 82654526 82654559 -66862478 - ID_B1 SINE B4 -7 217 193 3 1215 2415 145 10 17 chr6 82654559 82654965 -66862072 - MTB_Mm LTR MaLR -3 404 2 3 1215 522 269 0 84 chr6 82654965 82655073 -66861964 - ID_B1 SINE B4 -32 192 88 3 1215 1590 266 25 3 chr6 82655807 82656165 -66860872 - MTEa LTR MaLR -11 368 3 3 1215 185 330 21 42 chr6 82656170 82656265 -66860772 + L2 LINE L2 1723 1815 -1604 3 1215 695 276 126 0 chr6 82656265 82656464 -66860573 + B4A SINE B4 5 228 -64 3 1215 4308 148 59 16 chr6 82656466 82657241 -66859796 + RMER13B LTR ERVK 1 809 -99 3 1215 266 170 43 0 chr6 82657273 82657320 -66859717 + tRNA-Lys-AAG tRNA tRNA 21 69 -7 3 1215 435 221 12 0 chr6 82657495 82657581 -66859456 - RMER13B LTR ERVK -821 87 1 3 1215 387 113 0 0 chr6 82657648 82657710 -66859327 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1215 355 188 62 0 chr6 82659892 82659954 -66857083 - ID_B1 SINE B4 -7 217 152 3 1215 1061 259 49 28 chr6 82659954 82660280 -66856757 + ORR1D2 LTR MaLR 3 335 -35 3 1215 300 300 35 87 chr6 82660509 82660739 -66856298 - L1MC5 LINE L1 -817 7144 6927 3 1215 407 237 131 51 chr6 82660817 82661016 -66856021 + MTD LTR MaLR 181 403 -16 3 1215 243 0 0 0 chr6 82661341 82661368 -66855669 + (ACTG)n Simple_repeat Simple_repeat 1 27 0 3 1215 637 252 146 23 chr6 82661416 82661635 -66855402 + RMER5 LTR ERV1 79 324 -210 3 1215 212 0 36 0 chr6 82661650 82661678 -66855359 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1215 746 236 64 38 chr6 82661710 82661966 -66855071 + MTD LTR MaLR 98 379 0 3 1215 1049 195 28 5 chr6 82661969 82662185 -66854852 + RMER5 LTR ERV1 314 534 0 3 1215 945 264 9 5 chr6 82662316 82662529 -66854508 + ID_B1 SINE B4 10 223 -1 3 1215 302 322 50 8 chr6 82663286 82663405 -66853632 - B4A SINE B4 -154 138 15 3 1215 1116 157 152 0 chr6 82663924 82664115 -66852922 + URR1B DNA MER1_type 5 224 -1 3 1215 240 319 50 16 chr6 82665894 82666015 -66851022 + ORR1D1 LTR MaLR 250 374 0 3 1215 3225 158 66 53 chr6 82666017 82666620 -66850417 - RMER19C LTR ERVK 0 611 1 3 1215 892 262 112 4 chr6 82666743 82666992 -66850045 + B4A SINE B4 1 276 -16 3 1215 742 282 20 0 chr6 82667101 82667296 -66849741 + Lx6 LINE L1 7262 7460 0 3 1215 382 236 80 15 chr6 82667451 82667584 -66849453 + B3 SINE B2 1 157 -41 3 1215 339 25 0 0 chr6 82667592 82667632 -66849405 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1215 363 157 29 0 chr6 82668058 82668128 -66848909 + PB1D9 SINE Alu 33 104 -16 3 1215 209 33 0 32 chr6 82668130 82668161 -66848876 + (TAA)n Simple_repeat Simple_repeat 1 30 0 3 1215 349 289 84 14 chr6 82668176 82668351 -66848686 + L1M5 LINE L1 3153 3341 -2805 3 1215 442 212 9 92 chr6 82669784 82669893 -66847144 + MLT1A0 LTR MaLR 1 100 -265 3 1215 528 16 0 0 chr6 82670131 82670192 -66846845 + (CATA)n Simple_repeat Simple_repeat 4 64 0 3 1215 355 311 38 0 chr6 82670267 82670373 -66846664 - PB1D10 SINE Alu -7 110 1 3 1215 317 323 30 0 chr6 82670410 82670509 -66846528 + L1M5 LINE L1 4060 4161 -1985 3 1215 188 67 33 0 chr6 82670518 82670548 -66846489 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1215 460 229 0 45 chr6 82670554 82670664 -66846373 - B1_Mur2 SINE Alu -1 148 44 3 1215 255 182 0 0 chr6 82670706 82670761 -66846276 - B1_Mur4 SINE Alu -94 56 2 3 1215 332 244 139 0 chr6 82670876 82670991 -66846046 + B1F SINE Alu 5 135 -14 3 1215 780 227 6 6 chr6 82671132 82671296 -66845741 + B3A SINE B2 1 164 -34 3 1215 537 16 0 0 chr6 82671314 82671376 -66845661 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1215 225 0 0 0 chr6 82671744 82671769 -66845268 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1215 310 214 107 74 chr6 82671805 82671926 -66845111 - ORR1D2 LTR MaLR -54 316 192 3 1215 811 255 143 8 chr6 82671932 82672315 -66844722 - MT2A LTR ERVL -99 434 1 3 1215 420 313 35 0 chr6 82672499 82672614 -66844423 + RSINE1 SINE B4 17 135 -30 3 1215 270 0 0 0 chr6 82672615 82672645 -66844392 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1215 449 0 36 0 chr6 82672645 82672701 -66844336 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 3 1215 305 197 132 0 chr6 82673567 82673643 -66843394 + ID_B1 SINE B4 86 171 -53 3 1215 356 301 174 14 chr6 82673769 82673907 -66843130 - RSINE1 SINE B4 -2 163 4 3 1215 762 251 23 0 chr6 82673976 82674147 -66842890 - B4 SINE B4 -11 281 107 3 1215 466 236 62 16 chr6 82674201 82674330 -66842707 + B1F SINE Alu 9 143 -6 3 1215 336 263 225 63 chr6 82674430 82674471 -66842566 + ID_B1 SINE B4 51 215 -9 3 1215 412 267 59 0 chr6 82674471 82674572 -66842465 + PB1D10 SINE Alu 2 108 -9 3 1215 499 245 171 0 chr6 82674652 82674845 -66842192 + ORR1D2 LTR MaLR 24 255 -129 3 1215 25 51 0 0 chr6 82675014 82675053 -66841984 + AT_rich Low_complexity Low_complexity 1 39 0 3 1215 285 29 0 0 chr6 82675284 82675318 -66841719 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1215 27 49 0 0 chr6 82676627 82676668 -66840369 + AT_rich Low_complexity Low_complexity 1 41 0 3 1215 285 29 0 0 chr6 82676895 82676929 -66840108 + (TCC)n Simple_repeat Simple_repeat 1 34 0 3 1215 551 236 36 142 chr6 82677683 82677930 -66839107 + ID_B1 SINE B4 2 222 -2 3 1215 402 275 0 158 chr6 82677934 82678111 -66838926 + B3 SINE B2 1 149 -67 3 1215 417 222 100 18 chr6 82678187 82678297 -66838740 + B3A SINE B2 2 120 -96 3 1215 228 163 23 0 chr6 82679034 82679077 -66837960 + G-rich Low_complexity Low_complexity 4 47 0 3 1215 347 252 8 57 chr6 82679188 82679310 -66837727 + PB1D7 SINE Alu 4 119 -1 3 1215 195 69 0 0 chr6 82679865 82679894 -66837143 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1215 193 57 0 54 chr6 82679996 82680033 -66837004 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 3 1215 491 0 17 0 chr6 82680490 82680549 -66836488 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1215 920 279 8 42 chr6 82681327 82681566 -66835471 + B4 SINE B4 2 232 -60 3 1215 1113 86 73 11 chr6 82681566 82681735 -66835302 + B2_Mm2 SINE B2 1 180 -15 3 1215 180 0 0 0 chr6 82681735 82681755 -66835282 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 1215 252 280 0 17 chr6 82681763 82681834 -66835203 + B1F1 SINE Alu 1 66 -83 4 1215 197 83 0 27 chr6 82681853 82681890 -66835147 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1215 214 242 155 21 chr6 82682356 82682453 -66834584 - MIR SINE MIR -66 196 87 4 1215 5619 2 0 0 chr6 82682599 82683238 -66833799 + L1Md_A LINE L1 5944 6582 0 4 1215 231 260 0 0 chr6 82683286 82683336 -66833701 + G-rich Low_complexity Low_complexity 4 53 0 4 1215 821 265 36 22 chr6 82683381 82683655 -66833382 - B4A SINE B4 -14 278 1 4 1215 480 237 26 0 chr6 82684334 82684448 -66832589 + B4 SINE B4 121 237 -55 4 1215 958 87 65 0 chr6 82684602 82684740 -66832297 - B1_Mus2 SINE Alu 0 147 1 4 1215 482 239 0 52 chr6 82685729 82685844 -66831193 + ID_B1 SINE B4 100 208 -16 4 1215 218 274 178 9 chr6 82686031 82686138 -66830899 + MIR SINE MIR 7 131 -131 4 1215 269 264 164 0 chr6 82686189 82686299 -66830738 + ID_B1 SINE B4 96 223 -1 4 1215 498 300 15 3 chr6 82686304 82686446 -66830591 + B3A SINE B2 1 142 -74 4 1215 464 0 0 18 chr6 82686446 82686503 -66830534 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1215 389 326 19 81 chr6 82686503 82686570 -66830467 + B3 SINE B2 143 197 -19 4 1215 544 262 75 56 chr6 82687867 82688081 -66828956 + ID_B1 SINE B4 3 220 -4 4 1215 243 0 0 0 chr6 82688602 82688629 -66828408 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1215 454 272 71 16 chr6 82689248 82689375 -66827662 + B4 SINE B4 124 257 -35 4 1215 414 0 0 0 chr6 82689377 82689423 -66827614 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1215 316 184 197 0 chr6 82689924 82690000 -66827037 + B1_Mus1 SINE Alu 2 92 -56 4 1215 1158 48 7 0 chr6 82690089 82690236 -66826801 + B1_Mus1 SINE Alu 1 148 0 4 1215 456 200 51 31 chr6 82690617 82690715 -66826322 + PB1D7 SINE Alu 12 111 -9 4 1215 470 278 170 11 chr6 82690718 82690900 -66826137 + B3 SINE B2 6 216 0 4 1215 871 116 7 0 chr6 82690909 82691047 -66825990 + B1_Mur4 SINE Alu 12 150 0 4 1215 610 235 64 29 chr6 82691762 82691933 -66825104 + B3 SINE B2 2 178 -38 4 1215 697 167 7 22 chr6 82692131 82692266 -66824771 + B1_Mur1 SINE Alu 17 149 0 4 1215 799 123 8 0 chr6 82692420 82692542 -66824495 + B1_Mus1 SINE Alu 2 124 -24 4 1215 877 42 0 17 chr6 82694284 82694404 -66822633 + (TG)n Simple_repeat Simple_repeat 2 119 0 4 1215 546 253 27 0 chr6 82694406 82694556 -66822481 - ID_B1 SINE B4 -70 154 1 4 1215 876 272 119 53 chr6 82695033 82695351 -66821686 + MTE2b LTR MaLR 2 340 -39 4 1215 357 24 0 0 chr6 82695876 82695918 -66821119 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1215 300 314 20 21 chr6 82695964 82696084 -66820953 - B3A SINE B2 -105 111 1 4 1215 256 269 45 0 chr6 82696433 82696500 -66820537 + RSINE1 SINE B4 3 72 -93 4 1215 262 318 0 0 chr6 82696826 82696889 -66820148 - ID4_ SINE ID 0 83 21 4 1215 258 271 35 23 chr6 82697072 82697159 -66819878 + PB1D10 SINE Alu 30 117 0 4 1215 395 250 41 20 chr6 82697727 82697825 -66819212 + RSINE1 SINE B4 25 124 -41 4 1215 396 0 0 0 chr6 82697825 82697869 -66819168 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1215 508 208 0 20 chr6 82697994 82698092 -66818945 - PB1D10 SINE Alu -8 109 14 4 1215 691 115 0 15 chr6 82699483 82699615 -66817422 + (TTTC)n Simple_repeat Simple_repeat 4 133 0 4 1215 223 280 0 0 chr6 82699645 82699695 -66817342 - ID_B1 SINE B4 -98 126 77 4 1215 313 215 38 12 chr6 82699785 82699865 -66817172 + MTD LTR MaLR 18 99 -320 4 1215 891 127 63 52 chr6 82700125 82700316 -66816721 + B2_Mm2 SINE B2 3 195 0 4 1215 410 260 151 0 chr6 82702243 82702389 -66814648 + B3 SINE B2 47 214 -2 4 1215 446 213 138 8 chr6 82702396 82702519 -66814518 + B1_Mur2 SINE Alu 1 139 -10 4 1215 339 25 0 0 chr6 82702526 82702566 -66814471 + (TAA)n Simple_repeat Simple_repeat 2 41 0 4 1215 555 279 31 6 chr6 82702848 82703007 -66814030 + RSINE1 SINE B4 3 165 0 4 1215 260 275 75 0 chr6 82703237 82703317 -66813720 - MIRb SINE MIR -150 118 33 4 1215 450 0 0 0 chr6 82704070 82704120 -66812917 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1215 303 306 57 16 chr6 82704733 82704856 -66812181 - RSINE1 SINE B4 -26 139 12 4 1215 392 194 16 67 chr6 82704862 82704968 -66812069 - PB1D7 SINE Alu -1 126 23 4 1215 1157 80 31 0 chr6 82705253 82705416 -66811621 + B2_Mm2 SINE B2 1 168 -27 4 1215 558 264 21 71 chr6 82705424 82705631 -66811406 + B3A SINE B2 1 198 0 4 1215 371 192 295 0 chr6 82705644 82705751 -66811286 + B1F2 SINE Alu 4 147 -1 4 1216 277 303 70 10 chr6 82707657 82707757 -66809280 + MIRb SINE MIR 59 164 -104 4 1216 477 248 100 7 chr6 82707760 82707910 -66809127 + RSINE1 SINE B4 2 165 0 4 1216 752 225 32 41 chr6 82707964 82708182 -66808855 + B3 SINE B2 1 216 0 4 1216 189 0 0 0 chr6 82708915 82708936 -66808101 + (CACCC)n Simple_repeat Simple_repeat 3 23 0 4 1216 1002 148 73 39 chr6 82709351 82709555 -66807482 + B3 SINE B2 1 211 -5 4 1216 279 0 0 0 chr6 82710062 82710093 -66806944 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1216 323 274 78 0 chr6 82710308 82710410 -66806627 + ID_B1 SINE B4 67 176 -48 4 1216 481 184 0 0 chr6 82710332 82710419 -66806618 + PB1D10 SINE Alu 18 104 -13 4 1216 345 47 0 0 chr6 82710644 82710687 -66806350 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 4 1216 1187 184 40 195 chr6 82711008 82711460 -66805577 + ORR1C2 LTR MaLR 3 384 0 4 1216 190 292 0 0 chr6 82712965 82713013 -66804024 + MER5B DNA MER1_type 6 53 -125 4 1216 234 0 0 0 chr6 82713166 82713192 -66803845 + (TTA)n Simple_repeat Simple_repeat 1 26 0 4 1216 516 221 0 0 chr6 82713209 82713313 -66803724 + ID_B1 SINE B4 92 195 -29 4 1216 539 244 0 51 chr6 82713483 82713621 -66803416 + B1F SINE Alu 13 143 -6 4 1216 273 266 10 41 chr6 82713643 82713741 -66803296 + B4 SINE B4 10 104 -188 4 1216 402 229 33 20 chr6 82714452 82714565 -66802472 + PB1D10 SINE Alu 4 120 0 4 1216 206 156 0 0 chr6 82714732 82714764 -66802273 + L4 LINE RTE 1789 1820 -209 4 1216 321 234 13 25 chr6 82715394 82715473 -66801564 + ID_B1 SINE B4 84 161 -63 4 1216 268 284 147 16 chr6 82715473 82715523 -66801514 + B1F SINE Alu 3 148 -1 4 1216 361 309 153 7 chr6 82715763 82715900 -66801137 + RSINE1 SINE B4 5 161 -4 4 1216 460 235 11 2 chr6 82715964 82716075 -66800962 + PB1D10 SINE Alu 13 127 -20 4 1216 303 28 0 0 chr6 82716179 82716215 -66800822 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1216 248 353 0 19 chr6 82717167 82717271 -66799766 - B1F1 SINE Alu -36 113 12 4 1216 997 160 44 27 chr6 82717328 82717553 -66799484 + Lx9 LINE L1 7279 7507 -137 4 1216 367 213 62 23 chr6 82717561 82717691 -66799346 + Lx9 LINE L1 7478 7612 -32 4 1216 411 21 0 0 chr6 82717691 82717739 -66799298 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1216 191 239 319 0 chr6 82718332 82718445 -66798592 + MIR SINE MIR 17 165 -97 4 1216 487 165 116 50 chr6 82718560 82718681 -66798356 + B1F SINE Alu 11 139 -10 4 1216 345 220 6 80 chr6 82719250 82719358 -66797679 + B1F SINE Alu 30 133 -16 4 1216 276 236 123 14 chr6 82719400 82719473 -66797564 + ID2 SINE ID 1 81 -2 4 1216 184 137 19 19 chr6 82720051 82720103 -66796934 + C-rich Low_complexity Low_complexity 3 54 0 4 1216 602 210 42 0 chr6 82720347 82720466 -66796571 + B1_Mur1 SINE Alu 5 128 -21 4 1216 584 201 212 26 chr6 82720475 82720664 -66796373 + ID_B1 SINE B4 1 224 0 4 1216 191 289 77 101 chr6 82721314 82721483 -66795554 + MIR SINE MIR 85 249 -13 4 1216 399 158 118 10 chr6 82721640 82721742 -66795295 + B1_Mus2 SINE Alu 4 116 -31 4 1216 343 210 35 95 chr6 82721751 82721867 -66795170 + B1_Mur2 SINE Alu 41 149 0 4 1216 210 162 0 0 chr6 82723130 82723167 -66793870 + A-rich Low_complexity Low_complexity 1 37 0 4 1216 391 246 48 19 chr6 82724925 82725092 -66791945 - MIR SINE MIR -48 214 44 4 1216 348 225 14 0 chr6 82725490 82725561 -66791476 - ID SINE ID -151 73 2 4 1216 287 358 99 36 chr6 82725594 82725846 -66791191 + L2 LINE L2 2265 2532 -887 4 1216 334 306 0 0 chr6 82726073 82726145 -66790892 + ID_B1 SINE B4 90 161 -63 4 1216 626 102 8 23 chr6 82726146 82726276 -66790761 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 4 1216 621 209 39 0 chr6 82726371 82726500 -66790537 + B1_Mur3 SINE Alu 2 135 -14 4 1216 892 105 7 7 chr6 82726500 82726644 -66790393 + (GAA)n Simple_repeat Simple_repeat 2 145 0 4 1216 492 163 48 58 chr6 82726657 82726761 -66790276 + B1_Mur3 SINE Alu 47 149 0 4 1216 194 105 26 0 chr6 82726761 82726799 -66790238 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 4 1216 258 288 0 64 chr6 82726799 82726877 -66790160 - B1F1 SINE Alu -76 73 1 4 1216 806 259 0 6 chr6 82727486 82727649 -66789388 + RSINE1 SINE B4 2 163 -2 4 1216 866 274 5 31 chr6 82727795 82728017 -66789020 - ID_B1 SINE B4 0 224 9 4 1216 504 0 0 0 chr6 82728281 82728337 -66788700 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1216 426 167 0 0 chr6 82728462 82728546 -66788491 + (CA)n Simple_repeat Simple_repeat 2 85 0 5 1216 348 182 120 43 chr6 82728546 82728638 -66788399 + HAL1-3A_ME LINE L1 1976 2074 -784 5 1216 336 217 17 94 chr6 82728913 82728925 -66788112 + MT2B LTR ERVL 152 154 -447 5 1216 729 227 0 0 chr6 82728925 82729057 -66787980 + B1_Mur1 SINE Alu 2 133 -16 5 1216 1689 185 12 178 chr6 82729059 82729309 -66787728 + MTC LTR MaLR 3 183 -238 5 1216 876 169 13 7 chr6 82729309 82729458 -66787579 - B1_Mur4 SINE Alu 0 150 1 5 1216 1689 185 12 178 chr6 82729458 82729707 -66787330 + MTC LTR MaLR 184 419 -2 5 1216 1185 73 6 11 chr6 82729714 82729894 -66787143 + (GAA)n Simple_repeat Simple_repeat 1 179 0 5 1216 818 126 7 0 chr6 82729896 82730031 -66787006 + (GA)n Simple_repeat Simple_repeat 2 137 0 5 1216 577 303 21 0 chr6 82730048 82730193 -66786844 + B1_Mur2 SINE Alu 1 148 -1 5 1216 534 16 0 0 chr6 82730193 82730256 -66786781 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1216 1300 200 35 4 chr6 82730380 82730641 -66786396 + MTEb LTR MaLR 101 369 -10 5 1216 287 306 76 69 chr6 82730881 82731025 -66786012 + MER97c DNA MER1_type? 38 182 -908 5 1216 204 267 33 16 chr6 82731379 82731440 -66785597 + (CATG)n Simple_repeat Simple_repeat 1 62 0 5 1216 201 74 0 0 chr6 82731440 82731467 -66785570 + (TATATG)n Simple_repeat Simple_repeat 6 32 0 5 1216 574 241 9 0 chr6 82731633 82731745 -66785292 - PB1D7 SINE Alu -2 118 6 5 1216 474 234 130 7 chr6 82731817 82731955 -66785082 - RSINE1 SINE B4 -9 156 2 5 1216 989 120 104 44 chr6 82732081 82732264 -66784773 + B2_Mm2 SINE B2 2 195 0 5 1216 760 244 8 9 chr6 82732264 82732453 -66784584 + B3A SINE B2 29 216 0 5 1216 852 241 30 0 chr6 82732637 82732840 -66784197 + B3 SINE B2 2 210 -6 5 1216 419 241 24 89 chr6 82732868 82732991 -66784046 + PB1D7 SINE Alu 1 115 -5 5 1216 630 0 0 0 chr6 82733019 82733089 -66783948 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 1216 755 230 133 0 chr6 82733490 82733686 -66783351 + ID_B1 SINE B4 2 223 -1 5 1216 329 259 145 40 chr6 82734042 82734230 -66782807 - MLT1L LTR MaLR -4 606 379 5 1216 240 163 0 0 chr6 82734374 82734417 -66782620 + CT-rich Low_complexity Low_complexity 5 47 0 5 1216 453 167 143 5 chr6 82734433 82734543 -66782494 - B1_Mur4 SINE Alu -22 127 2 5 1216 556 273 25 0 chr6 82734578 82734699 -66782338 - B3 SINE B2 -92 124 1 5 1216 230 355 68 62 chr6 82734790 82734952 -66782085 - MLT1L LTR MaLR -296 314 152 5 1216 366 276 239 19 chr6 82734969 82735087 -66781950 + MER20 DNA MER1_type 26 181 -38 5 1216 1391 236 67 30 chr6 82735087 82735488 -66781549 - MTD LTR MaLR -1 418 3 5 1216 366 276 239 19 chr6 82735488 82735528 -66781509 + MER20 DNA MER1_type 182 219 0 5 1216 207 88 0 0 chr6 82736188 82736222 -66780815 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1216 255 31 0 0 chr6 82736311 82736343 -66780694 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1216 1059 244 8 57 chr6 82736462 82736711 -66780326 - ID_B1 SINE B4 -46 246 8 5 1216 1501 215 98 21 chr6 82736711 82737100 -66779937 + MTD LTR MaLR 1 419 0 5 1216 394 325 42 103 chr6 82737100 82737111 -66779926 - B4A SINE B4 -281 11 2 5 1216 260 330 125 0 chr6 82737159 82737271 -66779766 + MLT1I LTR MaLR 2 127 -284 5 1216 618 318 142 20 chr6 82737319 82737415 -66779622 - Lx7 LINE L1 -1404 6292 6189 5 1216 423 0 0 0 chr6 82737415 82737462 -66779575 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1216 618 318 142 20 chr6 82737462 82737821 -66779216 - Lx7 LINE L1 -1508 6188 5783 5 1216 856 112 0 20 chr6 82737822 82737968 -66779069 + (TTTC)n Simple_repeat Simple_repeat 3 145 0 5 1216 549 184 0 28 chr6 82737970 82738076 -66778961 - B1_Mus2 SINE Alu -3 144 42 5 1216 344 0 0 161 chr6 82738079 82738259 -66778778 + (CTCTG)n Simple_repeat Simple_repeat 5 155 0 5 1216 292 87 0 42 chr6 82738260 82738308 -66778729 - PB1D9 SINE Alu -61 59 14 5 1216 291 301 0 97 chr6 82738320 82738434 -66778603 - Lx7 LINE L1 -1909 5787 5685 5 1216 2923 296 86 45 chr6 82738428 82738546 -66778491 + Lx8 LINE L1 6284 6390 -1083 5 1216 622 207 0 17 chr6 82738546 82738664 -66778373 + PB1D9 SINE Alu 5 120 0 5 1216 2923 296 86 45 chr6 82738664 82739688 -66777349 + Lx8 LINE L1 6391 7473 0 5 1216 633 144 0 21 chr6 82739711 82739780 -66777257 + T-rich Low_complexity Low_complexity 75 141 0 5 1216 1197 55 7 0 chr6 82739780 82739926 -66777111 - B1_Mm SINE Alu 0 147 1 5 1216 633 144 0 21 chr6 82739926 82739998 -66777039 + T-rich Low_complexity Low_complexity 4 74 0 5 1216 885 160 0 20 chr6 82740000 82740147 -66776890 - B1_Mur3 SINE Alu 0 149 6 5 1216 4187 136 85 3 chr6 82740177 82740916 -66776121 - ORR1A3-int LTR MaLR -26 1937 1138 5 1216 310 100 371 0 chr6 82740912 82740982 -66776055 + ORR1A2-int LTR MaLR 1868 1963 0 5 1216 1929 108 77 10 chr6 82740982 82741281 -66775756 + ORR1A2 LTR MaLR 1 319 -8 5 1216 377 366 52 0 chr6 82741286 82741439 -66775598 + MLT1I LTR MaLR 250 410 -1 5 1216 23 0 0 0 chr6 82741605 82741628 -66775409 + AT_rich Low_complexity Low_complexity 1 23 0 5 1216 3537 137 18 2 chr6 82741628 82742184 -66774853 - Lx2B LINE L1 0 7000 6436 5 1216 5883 114 19 11 chr6 82742184 82743216 -66773821 + Lx2B LINE L1 5439 6475 -525 5 1216 558 43 0 0 chr6 82743218 82743287 -66773750 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 5 1216 322 173 0 26 chr6 82743300 82743334 -66773703 + polypyrimidine Low_complexity Low_complexity 45 77 0 5 1216 1328 67 0 6 chr6 82743334 82743515 -66773522 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1216 322 173 0 26 chr6 82743515 82743557 -66773480 + polypyrimidine Low_complexity Low_complexity 3 44 0 5 1216 1041 241 14 0 chr6 82743557 82743777 -66773260 - ID_B1 SINE B4 0 224 2 5 1216 657 293 13 13 chr6 82743795 82743947 -66773090 - RSINE1 SINE B4 -4 161 10 5 1216 244 286 103 120 chr6 82743993 82744168 -66772869 + YREP_Mm Unknown Unknown 123 294 -1518 5 1216 522 264 108 8 chr6 82744062 82744192 -66772845 - ID_B1 SINE B4 -1 223 81 5 1216 256 222 26 65 chr6 82744896 82744973 -66772064 + B3A SINE B2 7 80 -118 5 1216 765 255 142 22 chr6 82744914 82745183 -66771854 + B4 SINE B4 21 292 0 5 1216 276 291 70 94 chr6 82744996 82745326 -66771711 - RMER12 LTR ERVK -232 1090 769 5 1216 227 222 56 0 chr6 82745327 82745381 -66771656 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 5 1216 988 224 23 41 chr6 82745420 82745639 -66771398 - B3 SINE B2 0 216 2 5 1216 870 132 73 0 chr6 82745783 82745919 -66771118 - B1_Mus2 SINE Alu 0 147 2 5 1216 308 239 8 150 chr6 82746225 82746247 -66770790 + MT2B LTR ERVL 147 149 -452 5 1216 659 175 0 34 chr6 82746247 82746365 -66770672 + B1_Mur1 SINE Alu 1 114 -35 5 1216 251 278 304 0 chr6 82746545 82746660 -66770377 + RSINE1 SINE B4 2 151 -14 5 1216 476 213 177 16 chr6 82746797 82746910 -66770127 + B1F2 SINE Alu 3 137 -12 5 1216 261 0 0 0 chr6 82746910 82746939 -66770098 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1216 354 134 0 0 chr6 82746956 82747023 -66770014 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1216 527 176 12 0 chr6 82747161 82747246 -66769791 + B1_Mur1 SINE Alu 42 127 -22 5 1216 299 208 12 49 chr6 82747214 82747295 -66769742 + ID_B1 SINE B4 145 222 -2 5 1216 264 59 0 0 chr6 82747846 82747880 -66769157 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1216 391 164 22 36 chr6 82748155 82748294 -66768743 + (CAGAGA)n Simple_repeat Simple_repeat 6 142 0 5 1216 207 217 0 42 chr6 82748307 82748355 -66768682 + G-rich Low_complexity Low_complexity 4 49 0 5 1216 180 366 24 24 chr6 82748725 82748809 -66768228 - L2b LINE L2 -66 3309 3226 5 1216 180 0 0 0 chr6 82748842 82748862 -66768175 + (CCAA)n Simple_repeat Simple_repeat 4 23 0 5 1216 524 227 121 10 chr6 82749064 82749247 -66767790 + B4 SINE B4 4 221 -71 5 1216 545 158 37 216 chr6 82749255 82749417 -66767620 + B1_Mur1 SINE Alu 2 134 -15 5 1216 636 14 0 0 chr6 82749418 82749491 -66767546 + (CAAAA)n Simple_repeat Simple_repeat 2 74 0 5 1216 514 184 99 46 chr6 82749786 82749917 -66767120 - B1_Mur2 SINE Alu -8 141 4 5 1216 714 211 17 126 chr6 82750701 82750875 -66766162 + URR1B DNA MER1_type 1 155 -70 5 1216 1811 167 45 33 chr6 82750870 82751267 -66765770 - RMER17C LTR ERVK -8 402 1 5 1216 571 110 21 21 chr6 82751267 82751356 -66765681 + URR1B DNA MER1_type 137 225 0 5 1216 1011 223 29 0 chr6 82751392 82751598 -66765439 + B3 SINE B2 5 216 0 5 1216 1029 73 58 0 chr6 82751624 82751761 -66765276 - B1_Mus1 SINE Alu 0 148 4 5 1216 537 16 0 0 chr6 82751819 82751881 -66765156 + (CTG)n Simple_repeat Simple_repeat 1 62 0 5 1216 779 192 94 25 chr6 82751894 82752065 -66764972 - B3 SINE B2 -25 191 2 5 1216 366 23 0 0 chr6 82752078 82752121 -66764916 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1216 254 191 250 21 chr6 82752293 82752389 -66764648 - PB1D9 SINE Alu -1 119 2 5 1216 272 194 16 31 chr6 82752393 82752457 -66764580 - ID_B1 SINE B4 -71 153 91 5 1216 224 122 24 0 chr6 82752797 82752838 -66764199 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1216 595 325 73 42 chr6 82752861 82752979 -66764058 + LTR40a LTR ERVL 89 210 -309 5 1216 1667 185 45 58 chr6 82752979 82753183 -66763854 - ORR1D1 LTR MaLR 0 374 171 5 1216 771 11 0 0 chr6 82753183 82753271 -66763766 + (GGGAGA)n Simple_repeat Simple_repeat 1 88 0 5 1216 1667 185 45 58 chr6 82753271 82753445 -66763592 - ORR1D1 LTR MaLR -204 170 1 5 1216 595 325 73 42 chr6 82753445 82753615 -66763422 + LTR40a LTR ERVL 211 386 -133 5 1216 518 215 18 61 chr6 82753667 82753707 -66763330 + RSINE1 SINE B4 13 46 -119 5 1216 2462 77 3 58 chr6 82753707 82754052 -66762985 - ORR1A3 LTR MaLR 0 326 1 5 1216 518 215 18 61 chr6 82754052 82754125 -66762912 + RSINE1 SINE B4 47 121 -44 5 1216 784 255 0 0 chr6 82754125 82754266 -66762771 + RSINE1 SINE B4 3 143 -22 5 1216 601 244 44 0 chr6 82754275 82754410 -66762627 + ID_B1 SINE B4 74 214 -10 5 1216 693 66 0 0 chr6 82754435 82754526 -66762511 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 5 1216 428 35 17 0 chr6 82754884 82754942 -66762095 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1216 499 266 152 14 chr6 82755042 82755252 -66761785 - MER45B DNA Tip100 -391 649 411 6 1216 269 261 0 14 chr6 82755253 82755323 -66761714 + ID2 SINE ID 2 70 -13 6 1216 1121 76 0 0 chr6 82755352 82755496 -66761541 + B1_Mus1 SINE Alu 5 148 0 6 1216 318 148 0 0 chr6 82755496 82755550 -66761487 + (GGAGAA)n Simple_repeat Simple_repeat 4 57 0 6 1216 624 27 0 0 chr6 82755550 82755624 -66761413 + (GAAAA)n Simple_repeat Simple_repeat 2 75 0 6 1216 225 246 0 0 chr6 82755667 82755732 -66761305 + (CATA)n Simple_repeat Simple_repeat 2 66 0 6 1216 761 122 24 16 chr6 82755769 82755894 -66761143 - B2_Mm2 SINE B2 0 195 70 6 1216 259 311 49 25 chr6 82755943 82756065 -66760972 - B1_Mus2 SINE Alu -22 125 1 6 1216 392 324 28 0 chr6 82755960 82756068 -66760969 - ID_B1 SINE B4 -35 189 79 6 1216 382 345 71 11 chr6 82756080 82756262 -66760775 - MER45B DNA Tip100 -741 299 107 6 1216 540 252 41 69 chr6 82756263 82756408 -66760629 + ID_B1 SINE B4 84 224 0 6 1216 22 35 0 0 chr6 82756425 82756454 -66760583 + AT_rich Low_complexity Low_complexity 1 29 0 6 1216 570 299 27 11 chr6 82756559 82756762 -66760275 + B4 SINE B4 1 191 -33 6 1216 366 74 0 0 chr6 82756799 82756853 -66760184 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1216 455 298 9 9 chr6 82756877 82756982 -66760055 - MER45B DNA Tip100 -934 106 2 6 1216 529 279 93 31 chr6 82757422 82757648 -66759389 - MTEa LTR MaLR -5 374 135 6 1216 384 77 0 0 chr6 82757773 82757825 -66759212 + (CCCCCT)n Simple_repeat Simple_repeat 6 57 0 6 1216 324 0 0 0 chr6 82758772 82758808 -66758229 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1216 258 242 39 15 chr6 82758884 82758973 -66758064 + B1F SINE Alu 11 102 -47 6 1216 666 234 31 31 chr6 82758998 82759157 -66757880 + ID_B1 SINE B4 64 222 -2 6 1216 806 236 99 91 chr6 82759184 82759604 -66757433 + ORR1D1 LTR MaLR 6 394 0 6 1216 987 179 107 5 chr6 82759648 82759844 -66757193 - B3 SINE B2 0 216 1 6 1216 799 204 93 44 chr6 82759867 82760072 -66756965 - B3 SINE B2 0 216 2 6 1216 33 25 0 0 chr6 82760079 82760119 -66756918 + AT_rich Low_complexity Low_complexity 1 40 0 6 1216 968 209 79 5 chr6 82760125 82760327 -66756710 + ID_B1 SINE B4 1 217 -7 6 1216 709 240 92 15 chr6 82760744 82760939 -66756098 - B3 SINE B2 -6 210 1 6 1216 528 275 46 0 chr6 82760993 82761124 -66755913 - B1_Mur1 SINE Alu -10 139 3 6 1216 264 91 0 0 chr6 82761727 82761771 -66755266 + (TTGG)n Simple_repeat Simple_repeat 4 47 0 6 1216 423 0 0 0 chr6 82761772 82761819 -66755218 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1216 505 252 0 72 chr6 82761836 82761947 -66755090 - B1_Mus2 SINE Alu -40 107 5 6 1216 387 0 0 0 chr6 82761948 82761991 -66755046 + (TTG)n Simple_repeat Simple_repeat 1 43 0 6 1216 382 194 0 56 chr6 82761991 82762062 -66754975 - B1_Mur2 SINE Alu -13 136 70 6 1216 600 209 14 10 chr6 82762118 82762250 -66754787 - B1_Mus2 SINE Alu -7 142 15 6 1216 251 164 16 0 chr6 82762386 82762447 -66754590 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 6 1216 579 92 0 0 chr6 82762462 82762549 -66754488 + (TTCC)n Simple_repeat Simple_repeat 3 89 0 6 1216 725 271 41 23 chr6 82762549 82762768 -66754269 - ID_B1 SINE B4 0 224 2 6 1216 953 223 15 10 chr6 82763238 82763442 -66753595 - B3 SINE B2 -9 207 3 6 1216 234 275 0 0 chr6 82763552 82763632 -66753405 + T-rich Low_complexity Low_complexity 1 80 0 6 1216 207 0 0 0 chr6 82763675 82763698 -66753339 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1216 2351 136 79 13 chr6 82763769 82764163 -66752874 - MTC LTR MaLR 0 421 2 6 1216 555 214 165 8 chr6 82764164 82764291 -66752746 - B1_Mur1 SINE Alu 0 149 3 6 1216 686 267 138 5 chr6 82764318 82764514 -66752523 - B4A SINE B4 -68 224 3 6 1216 374 200 14 0 chr6 82764688 82764758 -66752279 + ID4 SINE ID 3 73 -10 6 1216 330 352 69 21 chr6 82765252 82765284 -66751753 + ID_B1 SINE B4 53 91 -133 6 1216 508 234 34 9 chr6 82765284 82765406 -66751631 + B1F SINE Alu 1 117 0 6 1216 679 171 17 8 chr6 82765670 82765788 -66751249 + PB1D9 SINE Alu 2 120 0 6 1216 486 226 17 25 chr6 82765971 82766089 -66750948 + PB1D7 SINE Alu 3 119 -1 6 1216 342 138 0 0 chr6 82766188 82766246 -66750791 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 6 1216 258 207 0 0 chr6 82766346 82766404 -66750633 + CT-rich Low_complexity Low_complexity 2 59 0 6 1216 923 53 76 0 chr6 82766411 82766543 -66750494 - B1_Mus1 SINE Alu 0 148 7 6 1216 977 135 0 0 chr6 82766716 82766864 -66750173 + B1_Mus1 SINE Alu 1 148 0 6 1216 373 313 38 15 chr6 82766912 82767045 -66749992 + MER20 DNA MER1_type 67 202 -17 6 1216 277 339 21 58 chr6 82767052 82767240 -66749797 + L4 LINE RTE 866 1046 -983 6 1216 324 130 0 0 chr6 82767584 82767638 -66749399 + B3A SINE B2 1 54 -144 6 1216 835 136 8 8 chr6 82767644 82767777 -66749260 - RMER19B LTR ERVK 0 902 770 6 1216 369 0 0 0 chr6 82767826 82767867 -66749170 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1216 806 249 71 5 chr6 82767880 82768078 -66748959 + B3 SINE B2 1 211 -5 6 1216 1290 242 17 41 chr6 82768104 82768397 -66748640 + Lx8 LINE L1 6193 6478 -995 6 1216 421 312 0 0 chr6 82768647 82768759 -66748278 + B3A SINE B2 5 116 -82 6 1216 291 54 0 0 chr6 82768813 82768850 -66748187 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1216 1271 110 16 10 chr6 82769499 82769692 -66747345 - B2_Mm2 SINE B2 0 195 2 6 1216 274 260 69 103 chr6 82769723 82769749 -66747288 - B1F SINE Alu -1 148 37 6 1216 372 278 22 0 chr6 82769749 82769839 -66747198 - ID_B1 SINE B4 -15 209 118 6 1216 181 302 19 19 chr6 82769912 82769966 -66747071 + L2c LINE L2 3333 3386 -1 6 1216 494 261 0 0 chr6 82770050 82770142 -66746895 + RSINE1 SINE B4 51 142 -23 6 1216 546 16 0 0 chr6 82770150 82770213 -66746824 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1216 952 231 29 5 chr6 82770216 82770420 -66746617 - B3 SINE B2 -7 209 1 6 1216 642 264 7 7 chr6 82770467 82770612 -66746425 - RSINE1 SINE B4 -13 152 8 6 1216 797 199 134 0 chr6 82771128 82771299 -66745738 - ID_B1 SINE B4 -30 194 1 6 1216 225 312 0 0 chr6 82772246 82772323 -66744714 + G-rich Low_complexity Low_complexity 1 77 0 6 1216 672 286 24 100 chr6 82772418 82772612 -66744425 + B3A SINE B2 1 197 -1 6 1216 850 172 0 14 chr6 82772612 82772759 -66744278 - B1_Mur2 SINE Alu -3 146 2 6 1216 381 286 24 100 chr6 82772759 82772774 -66744263 + B2_Mm2 SINE B2 180 194 -1 6 1216 192 152 0 0 chr6 82772788 82772821 -66744216 + GA-rich Low_complexity Low_complexity 2 34 0 6 1216 431 281 111 70 chr6 82772821 82772993 -66744044 + B3A SINE B2 8 186 -9 6 1216 216 156 78 0 chr6 82773051 82773128 -66743909 + (CATG)n Simple_repeat Simple_repeat 2 84 0 6 1216 377 347 87 35 chr6 82773518 82773680 -66743357 + B3A SINE B2 1 171 -27 6 1216 672 93 0 0 chr6 82773680 82773777 -66743260 + (TG)n Simple_repeat Simple_repeat 1 97 0 6 1216 225 94 0 0 chr6 82773811 82773843 -66743194 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1216 21 0 0 0 chr6 82773845 82773866 -66743171 + AT_rich Low_complexity Low_complexity 1 21 0 6 1216 279 0 0 0 chr6 82773918 82773949 -66743088 + (CAGAG)n Simple_repeat Simple_repeat 5 35 0 6 1216 260 278 10 91 chr6 82774801 82774900 -66742137 + MT2B2 LTR ERVL 151 241 -343 6 1216 566 276 0 43 chr6 82774819 82774959 -66742078 + ID_B1 SINE B4 84 217 -7 6 1216 634 273 53 74 chr6 82774975 82775165 -66741872 + B3A SINE B2 9 194 -4 6 1216 789 146 85 0 chr6 82775174 82775304 -66741733 + B1_Mus2 SINE Alu 7 147 0 6 1216 785 256 10 25 chr6 82775323 82775519 -66741518 + B3A SINE B2 1 193 -5 6 1216 1505 54 11 0 chr6 82775663 82775849 -66741188 + B2_Mm1a SINE B2 1 188 -5 6 1216 231 214 0 0 chr6 82775887 82775943 -66741094 + T-rich Low_complexity Low_complexity 1 56 0 6 1216 383 203 42 0 chr6 82775949 82776048 -66740989 + B3 SINE B2 14 122 -76 6 1216 431 257 89 0 chr6 82776131 82776232 -66740805 + B3 SINE B2 107 216 0 6 1216 460 223 206 28 chr6 82776249 82776429 -66740608 - B3A SINE B2 -4 212 1 6 1216 188 159 182 0 chr6 82776774 82776818 -66740219 - L2b LINE L2 0 3375 3324 6 1216 413 180 139 10 chr6 82777286 82777387 -66739650 + PB1D9 SINE Alu 5 118 -2 6 1216 323 304 60 17 chr6 82777445 82777562 -66739475 + RSINE1 SINE B4 8 129 -36 6 1216 786 91 0 0 chr6 82777564 82777685 -66739352 + (CA)n Simple_repeat Simple_repeat 2 122 0 6 1216 440 207 51 11 chr6 82777902 82778001 -66739036 - ORR1D1 LTR MaLR 0 374 229 6 1216 2258 148 28 0 chr6 82778001 82778365 -66738672 + ORR1D1 LTR MaLR 1 374 0 6 1216 257 242 54 77 chr6 82778365 82778395 -66738642 - ORR1D1 LTR MaLR -101 228 203 6 1216 263 250 59 0 chr6 82778410 82778478 -66738559 + PB1D7 SINE Alu 12 83 -37 6 1216 312 48 0 0 chr6 82778478 82778520 -66738517 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 6 1216 1057 46 8 0 chr6 82778520 82778650 -66738387 - B1_Mm SINE Alu 0 147 17 6 1216 235 214 0 28 chr6 82778694 82778766 -66738271 + G-rich Low_complexity Low_complexity 4 73 0 6 1216 1458 77 1 3 chr6 82778768 82779497 -66737540 + (GAA)n Simple_repeat Simple_repeat 1 727 0 6 1216 240 208 0 0 chr6 82779497 82779545 -66737492 + GA-rich Low_complexity Low_complexity 1 48 0 6 1216 499 240 38 60 chr6 82779548 82779681 -66737356 + ID_B1 SINE B4 94 223 -1 7 1216 2812 138 60 43 chr6 82780128 82780643 -66736394 + RLTR28 LTR ERVL 1 524 0 7 1216 222 37 0 0 chr6 82781024 82781051 -66735986 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1216 414 0 0 0 chr6 82781051 82781096 -66735941 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1216 186 103 0 0 chr6 82781120 82781149 -66735888 + (TCG)n Simple_repeat Simple_repeat 2 30 0 7 1216 548 138 0 8 chr6 82781172 82781303 -66735734 + (TC)n Simple_repeat Simple_repeat 1 130 0 7 1216 224 30 0 29 chr6 82781571 82781605 -66735432 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1216 285 89 0 0 chr6 82781662 82781707 -66735330 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 7 1216 1368 67 0 0 chr6 82782070 82782250 -66734787 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 7 1216 200 111 28 0 chr6 82782250 82782286 -66734751 + (CCCCCT)n Simple_repeat Simple_repeat 1 37 0 7 1216 538 194 107 0 chr6 82782290 82782393 -66734644 - B1_Mur2 SINE Alu -34 115 2 7 1216 398 240 106 0 chr6 82782528 82782632 -66734405 + ID_B1 SINE B4 90 204 -20 7 1216 23 33 0 0 chr6 82782632 82782662 -66734375 + AT_rich Low_complexity Low_complexity 1 30 0 7 1216 878 200 0 0 chr6 82783687 82783837 -66733200 + B1_Mur4 SINE Alu 1 150 0 7 1216 349 362 40 0 chr6 82783903 82784052 -66732985 + MIRb SINE MIR 9 163 -105 7 1216 307 203 25 86 chr6 82784086 82784167 -66732870 + PB1D7 SINE Alu 24 99 -21 7 1216 457 220 126 8 chr6 82784181 82784300 -66732737 + B1F2 SINE Alu 5 137 -12 7 1216 222 37 0 0 chr6 82784362 82784389 -66732648 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1216 1414 78 6 0 chr6 82784405 82784584 -66732453 - B2_Mm1t SINE B2 -13 180 1 7 1216 662 169 279 35 chr6 82784593 82784765 -66732272 - B3 SINE B2 0 216 3 7 1216 539 266 45 19 chr6 82784852 82785009 -66732028 - RSINE1 SINE B4 0 165 5 7 1216 209 270 27 143 chr6 82785464 82785611 -66731426 - L2c LINE L2 0 3387 3258 7 1216 264 333 14 0 chr6 82785673 82785742 -66731295 + PB1D10 SINE Alu 14 83 -34 7 1216 218 287 31 94 chr6 82785742 82785769 -66731268 + B4A SINE B4 99 188 -104 7 1216 959 250 24 0 chr6 82785796 82786008 -66731029 + ORR1E LTR MaLR 143 359 0 7 1216 564 56 0 0 chr6 82786038 82786110 -66730927 + (GAAAA)n Simple_repeat Simple_repeat 3 74 0 7 1216 372 312 69 23 chr6 82786118 82786249 -66730788 + B1F1 SINE Alu 12 148 -1 7 1216 482 261 50 50 chr6 82786305 82786446 -66730591 + B1F SINE Alu 9 149 0 7 1216 442 198 12 0 chr6 82786450 82786531 -66730506 + ID4_ SINE ID 2 83 0 7 1216 400 275 0 0 chr6 82786778 82786869 -66730168 - ID_B1 SINE B4 -4 220 130 7 1216 621 66 0 0 chr6 82786892 82786983 -66730054 + (TCTA)n Simple_repeat Simple_repeat 1 91 0 7 1216 206 204 37 0 chr6 82786984 82787038 -66729999 + T-rich Low_complexity Low_complexity 1 56 0 7 1216 368 244 250 8 chr6 82787038 82787158 -66729879 - B1F2 SINE Alu 0 149 1 7 1216 847 237 19 37 chr6 82787689 82787904 -66729133 - B3 SINE B2 -4 212 2 7 1216 316 237 163 10 chr6 82787996 82788094 -66728943 + PB1D10 SINE Alu 5 117 0 7 1216 1159 168 9 46 chr6 82788105 82788323 -66728714 + B3 SINE B2 7 216 0 7 1216 705 162 0 0 chr6 82788338 82788443 -66728594 + B3 SINE B2 1 105 -111 7 1216 279 238 64 89 chr6 82788469 82788626 -66728411 + RLTR15 LTR ERVK 186 338 -21 7 1216 543 197 11 11 chr6 82788888 82788995 -66728042 - B1_Mur2 SINE Alu 0 149 21 7 1216 443 284 9 0 chr6 82788995 82789104 -66727933 - PB1D7 SINE Alu -10 110 1 7 1216 1183 70 0 0 chr6 82789286 82789429 -66727608 + B1_Mus1 SINE Alu 1 143 -5 7 1216 4148 226 45 39 chr6 82789434 82790395 -66726642 - RMER1C Other Other -1 1341 375 7 1216 1373 246 53 74 chr6 82790395 82791263 -66725774 - RMER1B Other Other -203 863 92 7 1216 825 313 68 11 chr6 82791418 82791683 -66725354 - B4A SINE B4 -10 282 3 7 1216 546 244 63 0 chr6 82791718 82791845 -66725192 - ID_B1 SINE B4 -13 211 77 7 1216 456 258 133 0 chr6 82791840 82791968 -66725069 - B1_Mur1 SINE Alu 0 149 5 7 1216 183 222 0 0 chr6 82791971 82792016 -66725021 + CT-rich Low_complexity Low_complexity 1 45 0 7 1216 288 0 0 0 chr6 82792016 82792048 -66724989 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 7 1216 227 264 78 33 chr6 82792054 82792144 -66724893 - PB1D10 SINE Alu -22 95 2 7 1216 449 70 0 0 chr6 82792214 82792271 -66724766 + MER34B-int LTR ERV1 3554 3610 -1746 7 1216 394 250 107 16 chr6 82792313 82792435 -66724602 - ID_B1 SINE B4 -4 220 88 7 1216 569 211 79 0 chr6 82792327 82792441 -66724596 - B1_Mur2 SINE Alu -26 123 1 7 1216 262 330 64 0 chr6 82792445 82792468 -66724569 - PB1D10 SINE Alu -1 116 1 7 1216 274 314 12 0 chr6 82792468 82792554 -66724483 - ID_B1 SINE B4 -56 168 82 7 1216 509 223 0 19 chr6 82792607 82792712 -66724325 - PB1D10 SINE Alu -3 114 12 7 1216 326 302 0 50 chr6 82792628 82792729 -66724308 - ID_B1 SINE B4 -48 176 81 7 1216 216 0 0 0 chr6 82793388 82793412 -66723625 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 7 1216 534 309 126 11 chr6 82793599 82793782 -66723255 + ID_B1 SINE B4 21 224 0 7 1216 185 178 22 0 chr6 82793790 82793835 -66723202 + GA-rich Low_complexity Low_complexity 3 48 0 7 1216 219 282 43 108 chr6 82794373 82794512 -66722525 - L2b LINE L2 -31 3344 3215 7 1216 388 206 0 0 chr6 82794912 82794975 -66722062 + ID_B1 SINE B4 136 198 -26 7 1216 960 239 19 5 chr6 82796203 82796409 -66720628 - B3 SINE B2 -7 209 1 7 1216 564 225 54 0 chr6 82796416 82796527 -66720510 - B1F SINE Alu -3 146 30 7 1216 711 300 137 4 chr6 82796782 82797030 -66720007 + RMER15 LTR ERVL 294 574 -1 7 1216 418 295 31 37 chr6 82797624 82797653 -66719384 - RSINE1 SINE B4 -1 164 141 7 1216 288 0 0 0 chr6 82797653 82797685 -66719352 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1216 418 295 31 37 chr6 82797685 82797817 -66719220 - RSINE1 SINE B4 -25 140 4 7 1216 546 289 0 8 chr6 82797936 82798065 -66718972 + ID_B1 SINE B4 88 215 -9 7 1216 1239 122 16 22 chr6 82798079 82798264 -66718773 + B2_Mm2 SINE B2 5 188 -7 7 1216 2205 100 18 30 chr6 82798307 82798637 -66718400 - ORR1A3 LTR MaLR 0 326 1 7 1216 298 276 195 0 chr6 82798638 82798725 -66718312 + B3A SINE B2 3 106 -92 7 1216 342 194 83 0 chr6 82798787 82798859 -66718178 - ID4 SINE ID -4 79 2 7 1216 343 214 17 34 chr6 82798869 82798958 -66718079 - B1F SINE Alu -51 96 3 7 1216 189 0 0 0 chr6 82798978 82798999 -66718038 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1216 731 221 29 0 chr6 82799003 82799139 -66717898 - RSINE1 SINE B4 -21 144 5 7 1216 975 269 43 22 chr6 82799433 82799468 -66717569 - B4A SINE B4 0 292 253 7 1216 573 52 0 0 chr6 82799468 82799545 -66717492 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 1216 975 269 43 22 chr6 82799545 82799786 -66717251 - B4A SINE B4 -40 252 10 7 1216 396 311 101 22 chr6 82799830 82799968 -66717069 - RSINE1 SINE B4 -8 157 9 7 1216 522 207 170 7 chr6 82800622 82800763 -66716274 - RSINE1 SINE B4 0 165 2 7 1216 956 261 42 8 chr6 82801066 82801329 -66715708 + B4A SINE B4 3 274 -18 7 1216 234 340 128 0 chr6 82801526 82801537 -66715500 + ID_B1 SINE B4 70 92 -132 7 1216 319 292 124 0 chr6 82801537 82801626 -66715411 + PB1D10 SINE Alu 1 100 -17 7 1216 315 0 0 0 chr6 82801627 82801662 -66715375 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1216 924 97 37 7 chr6 82801680 82801815 -66715222 - B2_Mm2 SINE B2 -55 140 2 7 1216 573 230 0 26 chr6 82802122 82802238 -66714799 - ID_B1 SINE B4 -10 214 102 7 1216 1684 198 98 14 chr6 82802251 82802599 -66714438 - MTC LTR MaLR -9 412 36 7 1216 629 193 0 7 chr6 82802599 82802740 -66714297 + (CA)n Simple_repeat Simple_repeat 1 140 0 7 1216 369 294 9 9 chr6 82802748 82802858 -66714179 + PB1D9 SINE Alu 5 114 -6 7 1216 526 283 0 0 chr6 82802864 82802977 -66714060 + B3A SINE B2 1 113 -85 7 1216 459 0 0 0 chr6 82802995 82803046 -66713991 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1216 526 244 49 0 chr6 82803663 82803786 -66713251 - ID_B1 SINE B4 -2 222 94 7 1216 381 207 75 75 chr6 82804040 82804160 -66712877 + PB1D7 SINE Alu 1 120 0 7 1216 867 10 0 0 chr6 82804662 82804762 -66712275 + (CA)n Simple_repeat Simple_repeat 2 101 0 7 1216 506 242 28 6 chr6 82804822 82804948 -66712089 - PB1D10 SINE Alu -18 131 7 7 1216 560 305 69 56 chr6 82805025 82805258 -66711779 + B4A SINE B4 57 292 0 7 1216 286 286 127 8 chr6 82806212 82806346 -66710691 - MER91A DNA Tip100 -44 152 3 7 1216 315 0 0 0 chr6 82806690 82806725 -66710312 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1216 290 290 40 30 chr6 82806846 82806959 -66710078 + MIR SINE MIR 42 155 -107 7 1216 536 0 16 0 chr6 82807173 82807237 -66709800 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 7 1216 259 264 111 0 chr6 82807240 82807312 -66709725 - ID2 SINE ID -2 81 2 7 1216 611 13 13 0 chr6 82807330 82807406 -66709631 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 1216 573 289 103 10 chr6 82807451 82807654 -66709383 - B4 SINE B4 -35 257 36 8 1216 628 224 7 20 chr6 82807673 82807819 -66709218 - B1F1 SINE Alu -4 145 2 8 1216 488 244 26 17 chr6 82808166 82808283 -66708754 - PB1D9 SINE Alu 0 120 3 8 1216 417 273 101 0 chr6 82808490 82808589 -66708448 + PB1 SINE Alu 17 125 -2 8 1216 390 281 0 0 chr6 82808599 82808681 -66708356 + ID4 SINE ID 2 83 0 8 1216 499 244 9 9 chr6 82809055 82809171 -66707866 + PB1D10 SINE Alu 1 116 -1 8 1216 930 98 20 0 chr6 82809371 82809524 -66707513 + (TCC)n Simple_repeat Simple_repeat 1 156 0 8 1216 545 167 59 0 chr6 82809524 82809626 -66707411 - B1F2 SINE Alu -17 132 25 8 1216 4508 50 0 26 chr6 82809631 82810206 -66706831 - L1Md_F3 LINE L1 0 6584 6025 8 1216 234 91 0 0 chr6 82810217 82810250 -66706787 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1216 596 250 75 14 chr6 82810274 82810420 -66706617 - RSINE1 SINE B4 -7 158 4 8 1216 296 180 33 0 chr6 82810457 82810518 -66706519 - ID4_ SINE ID -19 64 2 8 1216 653 252 0 83 chr6 82811099 82811315 -66705722 + B3A SINE B2 1 198 0 8 1216 1221 267 25 4 chr6 82811361 82811635 -66705402 - ORR1E LTR MaLR -41 318 39 8 1216 711 228 72 47 chr6 82811894 82812087 -66704950 - B3A SINE B2 0 198 1 8 1216 213 267 32 53 chr6 82812588 82812683 -66704354 - L2 LINE L2 -1321 2098 2006 8 1216 226 130 164 18 chr6 82812828 82812883 -66704154 - PB1D7 SINE Alu -2 118 56 8 1216 388 173 0 222 chr6 82812842 82812968 -66704069 - ID_B1 SINE B4 -15 209 112 8 1216 303 71 0 0 chr6 82814050 82814092 -66702945 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1216 231 36 0 0 chr6 82814092 82814119 -66702918 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 1216 603 260 32 0 chr6 82814120 82814243 -66702794 - RSINE1 SINE B4 -36 129 3 8 1216 288 297 9 47 chr6 82814343 82814355 -66702682 + MT2B LTR ERVL 153 160 -441 8 1216 656 218 41 27 chr6 82814355 82814501 -66702536 + B1_Mur1 SINE Alu 2 149 0 8 1216 281 256 84 84 chr6 82814497 82814687 -66702350 + B4A SINE B4 27 223 -69 8 1216 550 224 72 29 chr6 82814552 82814690 -66702347 + B1F SINE Alu 6 149 0 8 1216 210 295 0 152 chr6 82815142 82815161 -66701876 + B4 SINE B4 67 71 -221 8 1216 279 187 0 179 chr6 82815161 82815239 -66701798 + B1_Mus2 SINE Alu 1 64 -83 8 1216 280 338 105 0 chr6 82815322 82815455 -66701582 + MIRb SINE MIR 78 224 -44 8 1216 2434 126 79 8 chr6 82815583 82815975 -66701062 + MTC LTR MaLR 2 421 0 8 1216 449 239 142 31 chr6 82816198 82816325 -66700712 - PB1D7 SINE Alu -1 148 1 8 1216 1034 259 57 126 chr6 82816619 82817025 -66700012 - MTE2a LTR MaLR 0 379 2 8 1216 456 280 34 22 chr6 82817026 82817205 -66699832 - L1ME2 LINE L1 -137 6027 5847 8 1216 649 264 7 7 chr6 82817249 82817398 -66699639 + B1F1 SINE Alu 1 149 0 8 1216 240 232 49 0 chr6 82817422 82817504 -66699533 - MER20B DNA MER1_type -45 738 653 8 1216 962 297 40 18 chr6 82817510 82817784 -66699253 + B4A SINE B4 1 280 -12 8 1216 324 233 149 8 chr6 82817836 82817957 -66699080 - MER20B DNA MER1_type -129 654 517 8 1216 212 0 0 35 chr6 82818040 82818069 -66698968 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 8 1216 769 178 8 0 chr6 82818069 82818198 -66698839 - B1_Mur4 SINE Alu -12 138 9 8 1216 911 174 0 6 chr6 82818261 82818440 -66698597 + GA-rich Low_complexity Low_complexity 1 178 0 8 1216 233 313 105 73 chr6 82818522 82818646 -66698391 - MER20B DNA MER1_type -342 441 314 8 1216 609 227 175 6 chr6 82818655 82818764 -66698273 + B3 SINE B2 4 116 -100 8 1216 1289 147 4 74 chr6 82818764 82818881 -66698156 + URR1A DNA MER1_type 1 105 -121 8 1216 1036 79 50 0 chr6 82818881 82819020 -66698017 - B1_Mus2 SINE Alu -1 146 1 8 1216 1289 147 4 74 chr6 82819020 82819145 -66697892 + URR1A DNA MER1_type 106 226 0 8 1216 609 235 145 24 chr6 82819145 82819232 -66697805 + B3 SINE B2 116 209 -7 8 1216 242 287 49 76 chr6 82819351 82819536 -66697501 + Lx8 LINE L1 7293 7472 -1 8 1216 824 288 79 62 chr6 82819831 82820250 -66696787 + L1MA6 LINE L1 5602 6027 -273 8 1216 1590 202 36 23 chr6 82820285 82820594 -66696443 - MTD LTR MaLR 0 419 107 8 1216 747 177 56 14 chr6 82820594 82820737 -66696300 + B1_Mur1 SINE Alu 1 149 0 8 1216 211 333 0 0 chr6 82820738 82820792 -66696245 + polypurine Low_complexity Low_complexity 3 56 0 8 1216 654 214 8 0 chr6 82820806 82820923 -66696114 - MTD LTR MaLR -300 119 2 8 1216 588 234 7 47 chr6 82821180 82821328 -66695709 - B1_Mur1 SINE Alu -7 142 1 8 1216 435 19 0 0 chr6 82821404 82821456 -66695581 + (TTA)n Simple_repeat Simple_repeat 3 54 0 8 1216 667 217 33 0 chr6 82821457 82821577 -66695460 - B1_Mur1 SINE Alu -13 136 13 8 1216 289 122 0 0 chr6 82821637 82821678 -66695359 + ID_B1 SINE B4 129 169 -55 8 1216 1188 111 0 0 chr6 82821808 82821988 -66695049 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 1216 236 138 30 30 chr6 82821988 82822044 -66694993 + CT-rich Low_complexity Low_complexity 6 62 0 8 1216 342 308 49 98 chr6 82822847 82823052 -66693985 + LTR16A LTR ERVL 202 396 -55 8 1216 816 235 29 29 chr6 82823100 82823310 -66693727 + B3 SINE B2 5 214 -2 8 1216 435 197 0 0 chr6 82823443 82823519 -66693518 - ID_B1 SINE B4 -2 222 147 8 1216 317 210 176 20 chr6 82823519 82823545 -66693492 - PB1D7 SINE Alu -2 118 1 8 1216 306 0 0 0 chr6 82823869 82823903 -66693134 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1216 631 247 75 32 chr6 82824185 82824373 -66692664 - B3A SINE B2 0 198 3 8 1216 288 0 0 0 chr6 82824401 82824433 -66692604 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1216 953 218 6 0 chr6 82824433 82824598 -66692439 - B3 SINE B2 -50 166 1 8 1216 586 178 66 52 chr6 82824612 82824624 -66692413 - B1_Mus1 SINE Alu 0 148 139 8 1216 468 0 0 0 chr6 82824624 82824676 -66692361 + (TAG)n Simple_repeat Simple_repeat 1 52 0 8 1216 586 178 66 52 chr6 82824676 82824799 -66692238 - B1_Mus1 SINE Alu -10 138 11 8 1216 537 76 0 0 chr6 82825011 82825090 -66691947 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1216 355 319 33 25 chr6 82825091 82825213 -66691824 - B4 SINE B4 -169 123 1 8 1216 493 207 24 16 chr6 82825537 82825660 -66691377 - ORR1E LTR MaLR -218 141 18 8 1216 1098 150 0 22 chr6 82825996 82826216 -66690821 + (CAGAGA)n Simple_repeat Simple_repeat 1 215 0 8 1216 489 129 0 65 chr6 82826184 82826308 -66690729 + GA-rich Low_complexity Low_complexity 1 116 0 8 1216 565 102 96 58 chr6 82826310 82826414 -66690623 + B1_Mur1 SINE Alu 42 149 0 8 1216 941 221 19 19 chr6 82826556 82826768 -66690269 - B3 SINE B2 0 216 5 8 1216 569 300 7 0 chr6 82826834 82826974 -66690063 - ID_B1 SINE B4 0 224 84 8 1216 252 267 29 19 chr6 82826976 82827079 -66689958 - L1MD3 LINE L1 -94 7901 7798 8 1216 703 173 286 0 chr6 82827081 82827249 -66689788 + B3 SINE B2 1 216 0 8 1216 3300 53 2 2 chr6 82827413 82827809 -66689228 + MTA_Mm LTR MaLR 1 396 0 8 1216 410 221 0 0 chr6 82828084 82828161 -66688876 - RSINE1 SINE B4 -86 79 3 8 1216 183 80 0 0 chr6 82828467 82828492 -66688545 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1216 461 308 2 22 chr6 82828644 82828765 -66688272 - B3A SINE B2 -30 186 69 8 1216 1574 267 74 77 chr6 82828874 82829523 -66687514 - Lx8 LINE L1 -2 7471 6825 8 1216 455 186 116 82 chr6 82830189 82830335 -66686702 + B4 SINE B4 72 222 -70 8 1216 969 16 24 0 chr6 82830214 82830338 -66686699 + B1_Mm SINE Alu 21 147 0 8 1216 484 331 21 82 chr6 82830479 82830571 -66686466 - B3A SINE B2 -13 185 109 8 1216 1251 137 50 32 chr6 82830571 82830789 -66686248 + URR1B DNA MER1_type 3 224 -1 8 1216 484 331 21 82 chr6 82830789 82830890 -66686147 - B3A SINE B2 -90 108 5 8 1216 49 18 0 0 chr6 82830900 82830956 -66686081 + AT_rich Low_complexity Low_complexity 1 56 0 8 1216 337 169 30 15 chr6 82831000 82831066 -66685971 - B3A SINE B2 -124 74 8 8 1216 841 141 27 27 chr6 82831144 82831290 -66685747 - B1_Mur3 SINE Alu 0 149 4 8 1216 836 136 0 6 chr6 82832089 82832252 -66684785 + (TCTCC)n Simple_repeat Simple_repeat 5 166 0 8 1216 279 238 16 0 chr6 82832278 82832341 -66684696 - B1F SINE Alu -40 109 46 8 1216 184 337 98 10 chr6 82832670 82832772 -66684265 + MIRc SINE MIR 45 155 -113 8 1216 615 272 115 0 chr6 82832781 82832972 -66684065 - ID_B1 SINE B4 -11 213 1 8 1216 264 227 51 51 chr6 82833059 82833138 -66683899 + MIRm SINE MIR 85 163 -113 8 1216 661 167 52 9 chr6 82833141 82833256 -66683781 + B1F SINE Alu 24 143 -6 8 1216 186 167 250 0 chr6 82833319 82833391 -66683646 + MIRb SINE MIR 179 268 0 8 1216 531 248 27 74 chr6 82833391 82833539 -66683498 - ID_B1 SINE B4 0 224 84 8 1216 273 296 88 50 chr6 82833696 82833882 -66683155 - MIRc SINE MIR -82 186 3 8 1216 381 43 0 0 chr6 82833907 82833954 -66683083 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1216 749 284 44 65 chr6 82833954 82834229 -66682808 - B4 SINE B4 -23 269 1 8 1216 725 0 12 0 chr6 82834279 82834364 -66682673 + (TTCTC)n Simple_repeat Simple_repeat 5 90 0 8 1216 549 0 0 0 chr6 82834364 82834424 -66682613 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 8 1216 694 244 0 0 chr6 82834429 82834564 -66682473 - B1_Mur1 SINE Alu -13 136 2 8 1216 342 289 19 19 chr6 82834933 82835039 -66681998 + PB1D9 SINE Alu 2 107 -13 8 1216 1445 248 28 50 chr6 82835051 82835384 -66681653 - MTD LTR MaLR -14 405 65 8 1216 331 205 38 13 chr6 82835384 82835395 -66681642 + MER2 DNA MER2_type 258 268 -77 9 1216 1038 222 24 19 chr6 82835395 82835606 -66681431 - B3 SINE B2 0 216 5 9 1216 1445 248 28 50 chr6 82835606 82835622 -66681415 - MTD LTR MaLR -355 64 53 8 1216 331 205 38 13 chr6 82835622 82835673 -66681364 + MER2 DNA MER2_type 269 338 -7 9 1216 185 286 20 0 chr6 82835741 82835790 -66681247 - MIRb SINE MIR -175 93 44 9 1216 2692 61 116 5 chr6 82835808 82836187 -66680850 - BGLII LTR ERVK 0 421 1 9 1216 242 244 39 0 chr6 82836769 82836847 -66680190 + L1_Mur3 LINE L1 2106 2186 -3694 9 1216 709 272 65 16 chr6 82836937 82837184 -66679853 + RMER1C Other Other 540 798 -544 9 1217 211 213 43 0 chr6 82838413 82838460 -66678577 - B1_Mur4 SINE Alu -2 148 100 9 1217 640 250 92 20 chr6 82838954 82839150 -66677887 - MTD LTR MaLR -14 405 196 9 1217 366 183 0 0 chr6 82839177 82839248 -66677789 + (TTTA)n Simple_repeat Simple_repeat 4 74 0 9 1217 238 200 0 0 chr6 82839254 82839301 -66677736 - B3 SINE B2 -71 127 81 9 1217 222 37 0 0 chr6 82839360 82839387 -66677650 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 9 1217 398 257 138 0 chr6 82839452 82839561 -66677476 - B3 SINE B2 -91 125 2 9 1217 701 295 70 12 chr6 82839561 82839746 -66677291 - MTD LTR MaLR -202 217 19 9 1217 248 186 209 0 chr6 82840062 82840148 -66676889 - MIRb SINE MIR -46 222 119 9 1217 222 348 0 70 chr6 82840450 82840521 -66676516 + ID4_ SINE ID 1 66 -17 9 1217 1133 244 11 21 chr6 82841310 82841595 -66675442 - RMER15 LTR ERVL 0 575 294 9 1217 243 268 0 0 chr6 82841714 82841770 -66675267 - Lx7 LINE L1 -919 6777 6722 9 1217 528 250 35 56 chr6 82841799 82841943 -66675094 - MTD LTR MaLR -162 217 77 9 1217 223 261 23 0 chr6 82841944 82842032 -66675005 + CT-rich Low_complexity Low_complexity 1 90 0 9 1217 788 241 62 24 chr6 82842121 82842329 -66674708 - B3 SINE B2 0 216 1 9 1217 758 223 0 26 chr6 82842487 82842639 -66674398 + B1_Mur1 SINE Alu 2 149 0 9 1217 382 231 15 78 chr6 82842692 82842827 -66674210 + B3A SINE B2 80 216 0 9 1217 731 59 0 10 chr6 82843685 82843787 -66673250 + (GGGAGA)n Simple_repeat Simple_repeat 2 102 0 9 1217 320 322 11 0 chr6 82843919 82844009 -66673028 + ID_B1 SINE B4 134 224 0 9 1217 928 162 0 0 chr6 82844013 82844149 -66672888 + B1_Mur4 SINE Alu 2 137 -13 9 1217 410 110 18 0 chr6 82844149 82844240 -66672797 - Lx LINE L1 -1 6635 6542 9 1217 294 29 0 0 chr6 82844258 82844293 -66672744 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 1217 930 230 11 11 chr6 82844455 82844635 -66672402 + ID_B1 SINE B4 25 204 -20 9 1217 422 178 11 0 chr6 82844636 82844726 -66672311 + GA-rich Low_complexity Low_complexity 3 93 0 9 1217 1036 299 0 70 chr6 82846182 82846414 -66670623 + B4A SINE B4 2 219 -73 9 1217 639 289 28 42 chr6 82846414 82846627 -66670410 + B3 SINE B2 3 212 -4 9 1217 1036 299 0 70 chr6 82846627 82846707 -66670330 + B4A SINE B4 220 292 0 9 1217 339 113 0 0 chr6 82846708 82846761 -66670276 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1217 29 28 0 0 chr6 82846800 82846836 -66670201 + AT_rich Low_complexity Low_complexity 1 36 0 9 1217 769 254 18 36 chr6 82846941 82847162 -66669875 + ID_B1 SINE B4 2 218 -6 9 1217 1789 119 66 62 chr6 82848303 82848651 -66668386 + ORR1A2 LTR MaLR 8 384 0 9 1217 294 243 86 120 chr6 82848609 82848726 -66668311 + PB1D7 SINE Alu 2 114 -6 9 1217 199 191 32 0 chr6 82848781 82848844 -66668193 + GA-rich Low_complexity Low_complexity 3 67 0 9 1217 370 213 84 11 chr6 82849320 82849415 -66667622 + MIRb SINE MIR 4 105 -163 9 1217 271 340 41 48 chr6 82849418 82849563 -66667474 + ID_B1 SINE B4 28 171 -53 9 1217 424 202 8 111 chr6 82849481 82849598 -66667439 + PB1D10 SINE Alu 12 116 -1 9 1217 339 262 37 18 chr6 82849598 82849707 -66667330 + GA-rich Low_complexity Low_complexity 1 111 0 9 1217 426 238 103 44 chr6 82849707 82849843 -66667194 + B4A SINE B4 1 144 -148 9 1217 8574 61 0 17 chr6 82849843 82849965 -66667072 + Lx3A LINE L1 5498 5619 -267 9 1217 3129 68 2 15 chr6 82849965 82850370 -66666667 - MTB LTR MaLR 0 400 1 9 1217 8574 87 59 19 chr6 82850370 82851670 -66665367 + Lx3A LINE L1 5617 6970 -11 9 1217 736 27 45 0 chr6 82851670 82851781 -66665256 + (CATA)n Simple_repeat Simple_repeat 2 117 0 9 1217 1152 270 33 33 chr6 82851781 82852087 -66664950 + ORR1D2 LTR MaLR 52 357 -13 9 1217 750 179 0 16 chr6 82852153 82852278 -66664759 + B1_Mur1 SINE Alu 27 149 0 9 1217 414 333 5 14 chr6 82852618 82852831 -66664206 + L1MC4a LINE L1 5718 5928 -1954 9 1217 452 65 0 105 chr6 82853028 82853114 -66663923 - B2_Mm1a SINE B2 0 193 117 9 1217 756 249 14 20 chr6 82853177 82853368 -66663669 + B3A SINE B2 1 186 -9 9 1217 750 192 148 49 chr6 82853589 82853792 -66663245 + B4 SINE B4 2 224 -68 9 1217 560 229 53 8 chr6 82853811 82853943 -66663094 + B1_Mur1 SINE Alu 5 142 -7 9 1217 882 182 113 10 chr6 82853949 82854143 -66662894 + B3 SINE B2 1 214 -2 9 1217 840 48 0 0 chr6 82854272 82854377 -66662660 + (CA)n Simple_repeat Simple_repeat 1 105 0 9 1217 282 56 0 0 chr6 82855265 82855301 -66661736 + (T)n Simple_repeat Simple_repeat 1 36 0 9 1217 1262 268 57 21 chr6 82855395 82855730 -66661307 + MTEa LTR MaLR 1 347 -32 9 1217 540 368 33 24 chr6 82855738 82856069 -66660968 + RLTR21 LTR ERVK 10 343 -1229 9 1217 498 315 65 86 chr6 82856133 82856411 -66660626 + RMER12B LTR ERVK 499 770 -634 9 1217 287 156 0 0 chr6 82856469 82856514 -66660523 + RLTR21 LTR ERVK 762 806 -766 9 1217 228 261 15 30 chr6 82856615 82856682 -66660355 + MTEa LTR MaLR 314 379 0 9 1217 945 269 36 18 chr6 82856717 82856930 -66660107 + B4A SINE B4 52 269 -23 9 1217 567 0 0 0 chr6 82856930 82856993 -66660044 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1217 1348 311 78 26 chr6 82857126 82857469 -66659568 - MER90 LTR ERV1 -3 572 212 9 1217 4558 48 23 2 chr6 82857469 82858034 -66659003 - L1Md_F2 LINE L1 -1 6581 6005 9 1217 1348 311 78 26 chr6 82858034 82858232 -66658805 - MER90 LTR ERV1 -364 211 4 9 1217 1289 215 72 56 chr6 82858888 82859248 -66657789 + ORR1D2 LTR MaLR 1 366 -4 9 1217 193 331 67 31 chr6 82859398 82859591 -66657446 - L2a LINE L2 -4 3422 3223 9 1217 595 226 99 27 chr6 82859601 82859773 -66657264 + ORR1E LTR MaLR 1 189 -185 9 1217 448 99 44 0 chr6 82859778 82859869 -66657168 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 9 1217 476 201 219 17 chr6 82859870 82860048 -66656989 + ORR1E LTR MaLR 166 361 -9 9 1217 253 194 13 40 chr6 82860216 82860291 -66656746 + A-rich Low_complexity Low_complexity 3 75 0 9 1217 185 333 34 11 chr6 82860314 82860402 -66656635 - L2a LINE L2 -535 2884 2795 9 1217 373 296 30 20 chr6 82860516 82860616 -66656421 + MLT1K LTR MaLR 143 243 -352 9 1217 556 225 160 42 chr6 82860735 82860879 -66656158 - RSINE1 SINE B4 0 165 5 9 1217 186 43 0 0 chr6 82860954 82860977 -66656060 + (CAGA)n Simple_repeat Simple_repeat 3 25 0 9 1217 704 250 21 7 chr6 82861122 82861263 -66655774 + B1F SINE Alu 6 148 -1 9 1217 817 223 19 77 chr6 82861488 82861697 -66655340 + B3A SINE B2 2 198 0 9 1217 388 256 74 41 chr6 82861885 82862007 -66655030 - MIRb SINE MIR -53 215 90 9 1217 261 226 255 11 chr6 82862401 82862447 -66654590 - Charlie4z DNA MER1_type -3 164 110 9 1217 441 54 0 0 chr6 82862447 82862503 -66654534 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1217 261 226 255 11 chr6 82862503 82862550 -66654487 - Charlie4z DNA MER1_type -58 109 49 9 1217 265 210 31 79 chr6 82865290 82865402 -66651635 + B4A SINE B4 3 111 -181 9 1217 540 231 7 79 chr6 82865563 82865704 -66651333 + B1F1 SINE Alu 6 138 -11 9 1217 30 0 0 0 chr6 82865705 82865735 -66651302 + AT_rich Low_complexity Low_complexity 1 30 0 9 1217 269 171 0 214 chr6 82865944 82866033 -66651004 - B4 SINE B4 -1 291 222 9 1217 682 214 114 25 chr6 82866042 82866200 -66650837 - B3 SINE B2 -44 172 1 9 1217 229 161 0 67 chr6 82866235 82866295 -66650742 + L1MC5 LINE L1 7723 7778 -183 9 1217 372 288 129 80 chr6 82866594 82866858 -66650179 + B4 SINE B4 2 278 -14 9 1217 281 212 9 26 chr6 82866897 82867013 -66650024 + (CA)n Simple_repeat Simple_repeat 2 115 0 9 1217 189 217 22 0 chr6 82869009 82869055 -66647982 - MIRc SINE MIR -173 95 49 9 1217 221 370 37 9 chr6 82870114 82870223 -66646814 - MER5A DNA MER1_type -75 114 3 9 1217 193 200 0 0 chr6 82870499 82870534 -66646503 - MIRb SINE MIR -28 240 206 9 1217 319 284 0 13 chr6 82870662 82870737 -66646300 - ID4 SINE ID -9 74 1 9 1217 457 254 61 34 chr6 82871048 82871108 -66645929 + ID SINE ID 2 67 -157 9 1217 660 87 0 0 chr6 82871108 82871200 -66645837 + (ATGGTG)n Simple_repeat Simple_repeat 5 96 0 9 1217 457 254 61 34 chr6 82871200 82871216 -66645821 + ID SINE ID 68 82 -142 9 1217 365 284 0 10 chr6 82871216 82871312 -66645725 + PB1D10 SINE Alu 2 96 -21 9 1217 677 177 71 16 chr6 82871313 82871439 -66645598 + B1_Mur3 SINE Alu 15 147 -2 9 1217 956 208 15 25 chr6 82871443 82871640 -66645397 + B3 SINE B2 9 203 -13 9 1217 315 291 12 0 chr6 82871767 82871853 -66645184 + GA-rich Low_complexity Low_complexity 2 88 0 9 1217 277 354 77 0 chr6 82872618 82872748 -66644289 + MIRb SINE MIR 28 167 -101 9 1217 375 194 0 43 chr6 82873058 82873128 -66643909 + B1_Mur4 SINE Alu 3 69 -81 9 1217 245 245 9 101 chr6 82873114 82873158 -66643879 + MT2B2 LTR ERVL 159 257 -327 9 1217 327 222 11 53 chr6 82873195 82873207 -66643830 + ID_B1 SINE B4 134 224 0 9 1217 541 132 0 0 chr6 82873207 82873290 -66643747 + B1_Mur3 SINE Alu 67 149 0 9 1217 378 161 0 0 chr6 82873291 82873382 -66643655 + polypurine Low_complexity Low_complexity 1 91 0 9 1217 288 295 0 74 chr6 82873989 82874095 -66642942 + PB1D10 SINE Alu 6 104 -13 9 1217 720 204 80 0 chr6 82874095 82874232 -66642805 + B1_Mur2 SINE Alu 2 149 0 1 1217 288 295 0 74 chr6 82874232 82874246 -66642791 + PB1D10 SINE Alu 105 117 0 9 1217 307 298 58 44 chr6 82874613 82874750 -66642287 + YREP_Mm Unknown Unknown 173 311 -1501 1 1217 556 256 63 16 chr6 82874627 82874754 -66642283 - ID_B1 SINE B4 -10 214 82 1 1217 21 82 0 0 chr6 82874823 82874872 -66642165 + AT_rich Low_complexity Low_complexity 1 49 0 1 1217 1047 223 5 5 chr6 82875075 82875282 -66641755 + B3 SINE B2 5 211 -5 1 1217 243 293 0 74 chr6 82875333 82875414 -66641623 - ID_B1 SINE B4 -46 178 104 1 1217 1114 107 11 0 chr6 82875491 82875668 -66641369 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 1 1217 200 282 13 0 chr6 82875669 82875747 -66641290 + C-rich Low_complexity Low_complexity 4 82 0 1 1217 705 106 0 0 chr6 82875735 82875839 -66641198 + (TTTCC)n Simple_repeat Simple_repeat 5 108 0 1 1217 644 223 22 0 chr6 82875860 82875999 -66641038 - ID_B1 SINE B4 -1 223 82 1 1217 200 319 158 44 chr6 82876469 82876767 -66640270 - L2 LINE L2 -927 2492 2161 1 1217 395 228 26 26 chr6 82876906 82877020 -66640017 + PB1D10 SINE Alu 1 114 -3 1 1217 433 293 29 117 chr6 82877086 82877150 -66639887 + B4 SINE B4 43 226 -63 1 1217 605 270 14 7 chr6 82877150 82877288 -66639749 + B1_Mur1 SINE Alu 11 149 0 1 1217 21 0 0 0 chr6 82877364 82877385 -66639652 + AT_rich Low_complexity Low_complexity 1 21 0 1 1217 180 0 0 0 chr6 82877513 82877533 -66639504 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1217 1122 122 0 0 chr6 82877952 82878100 -66638937 + B1_Mur3 SINE Alu 1 148 -1 1 1217 663 255 14 7 chr6 82878408 82878542 -66638495 + B1_Mur3 SINE Alu 1 136 -13 1 1217 234 0 0 0 chr6 82878542 82878568 -66638469 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 1 1217 663 255 14 7 chr6 82878568 82878579 -66638458 + B1_Mur3 SINE Alu 137 147 -2 1 1217 1074 220 5 9 chr6 82878591 82878802 -66638235 + B3 SINE B2 2 211 -5 1 1217 451 0 34 0 chr6 82878810 82878869 -66638168 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1217 394 327 87 38 chr6 82878908 82879382 -66637655 + L1ME4a LINE L1 5336 5832 -292 1 1217 1006 136 0 26 chr6 82879385 82879536 -66637501 + B1_Mur2 SINE Alu 2 148 -1 1 1217 693 0 0 0 chr6 82879537 82879614 -66637423 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 1 1217 707 268 72 0 chr6 82879650 82879859 -66637178 + ID_B1 SINE B4 1 224 0 1 1217 301 280 48 48 chr6 82879961 82880085 -66636952 + Helitron3Na_Mam RC Helitron 17 140 -346 1 1217 428 306 60 16 chr6 82880349 82880532 -66636505 - MER3 DNA MER1_type -16 193 3 1 1217 294 143 0 0 chr6 82883329 82883378 -66633659 + (CAA)n Simple_repeat Simple_repeat 2 50 0 1 1217 513 336 46 22 chr6 82883468 82883705 -66633332 + MIRb SINE MIR 16 262 0 1 1217 901 239 47 0 chr6 82886134 82886347 -66630690 - ID_B1 SINE B4 -1 223 1 1 1217 822 39 0 0 chr6 82886827 82886929 -66630108 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 1217 476 229 91 9 chr6 82887548 82887658 -66629379 - PB1D7 SINE Alu 0 120 2 1 1217 766 116 16 0 chr6 82887874 82888003 -66629034 + (TCCC)n Simple_repeat Simple_repeat 1 131 0 1 1217 24 0 0 0 chr6 82888484 82888508 -66628529 + AT_rich Low_complexity Low_complexity 1 24 0 1 1217 372 43 0 0 chr6 82888523 82888569 -66628468 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1 1217 688 176 8 8 chr6 82888614 82888734 -66628303 - B3A SINE B2 -78 120 1 1 1217 191 204 20 0 chr6 82889236 82889285 -66627752 + (GGATG)n Simple_repeat Simple_repeat 2 51 0 1 1217 204 238 0 0 chr6 82889515 82889557 -66627480 + (CAG)n Simple_repeat Simple_repeat 1 42 0 1 1217 27 0 0 0 chr6 82889573 82889600 -66627437 + GC_rich Low_complexity Low_complexity 1 27 0 1 1217 566 226 5 136 chr6 82890023 82890207 -66626830 + RSINE1 SINE B4 6 165 0 1 1217 653 226 183 10 chr6 82890240 82890536 -66626501 - MTEa LTR MaLR 0 379 1 1 1217 1246 113 43 0 chr6 82890548 82890733 -66626304 + B2_Mm2 SINE B2 2 194 -1 1 1217 737 285 6 15 chr6 82891515 82891716 -66625321 + B3A SINE B2 8 194 -1 1 1217 1710 190 77 33 chr6 82891857 82892194 -66624843 + ORR1D2 LTR MaLR 1 352 -18 1 1217 299 297 176 46 chr6 82892186 82892220 -66624817 - Charlie20a DNA Charlie -344 463 432 1 1217 1575 56 0 0 chr6 82892220 82892400 -66624637 + B2_Mm1a SINE B2 2 181 -12 1 1217 180 0 0 0 chr6 82892400 82892420 -66624617 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1217 299 297 176 46 chr6 82892420 82892691 -66624346 - Charlie20a DNA Charlie -376 431 118 1 1217 222 67 0 62 chr6 82892961 82893009 -66624028 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1 1217 787 195 268 0 chr6 82893015 82893179 -66623858 + B3 SINE B2 1 208 -8 1 1217 2250 144 76 0 chr6 82893726 82894081 -66622956 - ORR1C2 LTR MaLR 0 384 3 1 1217 227 290 16 16 chr6 82894309 82894372 -66622665 + MER5A DNA MER1_type 9 71 -118 1 1217 350 258 176 25 chr6 82894503 82894662 -66622375 + L2a LINE L2 3244 3426 0 1 1217 236 200 33 11 chr6 82894962 82895053 -66621984 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 1217 403 301 127 10 chr6 82895064 82895269 -66621768 + LTR40c LTR ERVL 234 462 -3 1 1217 450 165 26 17 chr6 82895673 82895790 -66621247 + GA-rich Low_complexity Low_complexity 2 119 0 1 1217 304 221 25 38 chr6 82895837 82895917 -66621120 + PB1 SINE Alu 1 79 -48 1 1217 456 234 43 14 chr6 82895889 82896026 -66621011 + B3 SINE B2 81 216 0 1 1217 269 103 35 0 chr6 82897759 82897817 -66619220 + (TTCA)n Simple_repeat Simple_repeat 2 61 0 1 1217 193 162 14 14 chr6 82897863 82897932 -66619105 + CT-rich Low_complexity Low_complexity 2 70 0 1 1217 249 261 0 80 chr6 82897932 82897959 -66619078 - PB1D7 SINE Alu -40 80 55 1 1217 2536 139 152 9 chr6 82897959 82898243 -66618794 - RLTR19A LTR ERVK 0 496 174 1 1217 441 0 0 0 chr6 82898243 82898292 -66618745 + (CATAA)n Simple_repeat Simple_repeat 5 53 0 1 1217 2536 139 152 9 chr6 82898292 82898441 -66618596 - RLTR19A LTR ERVK -323 173 3 1 1217 249 261 0 80 chr6 82898441 82898488 -66618549 - PB1D7 SINE Alu -66 54 12 1 1217 232 217 40 92 chr6 82898605 82898681 -66618356 + ORSL DNA Tip100 187 258 -17 1 1217 262 301 27 0 chr6 82898689 82898762 -66618275 - ID4_ SINE ID 0 83 9 1 1217 312 27 0 0 chr6 82898770 82898807 -66618230 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1217 441 0 0 0 chr6 82898807 82898855 -66618182 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1217 182 191 0 21 chr6 82899757 82899805 -66617232 + (TATATG)n Simple_repeat Simple_repeat 1 47 0 1 1217 525 319 46 74 chr6 82899818 82900102 -66616935 - B4A SINE B4 -14 278 3 1 1217 22 0 0 0 chr6 82900262 82900284 -66616753 + AT_rich Low_complexity Low_complexity 1 22 0 1 1217 588 231 172 137 chr6 82900321 82900457 -66616580 - Tigger6b DNA MER2_type -130 1467 1330 1 1217 301 284 88 0 chr6 82900457 82900559 -66616478 + PB1D10 SINE Alu 5 115 -2 1 1217 1074 246 138 75 chr6 82900559 82901112 -66615925 - Tigger6b DNA MER2_type -1195 402 2 1 1217 512 271 28 0 chr6 82901133 82901240 -66615797 + B1F SINE Alu 1 110 -39 1 1217 997 92 62 56 chr6 82901351 82901513 -66615524 - B2_Mm2 SINE B2 -30 165 3 1 1217 365 286 0 23 chr6 82901571 82901657 -66615380 - PB1D7 SINE Alu 0 120 37 1 1217 446 269 145 58 chr6 82901773 82901911 -66615126 + RSINE1 SINE B4 3 152 -13 1 1217 338 257 137 10 chr6 82901981 82902083 -66614954 + PB1 SINE Alu 1 115 -12 1 1217 462 248 86 0 chr6 82902143 82902248 -66614789 - PB1D10 SINE Alu -3 114 1 1 1217 270 284 56 22 chr6 82902171 82902261 -66614776 - MT2B2 LTR ERVL -340 244 152 1 1217 281 291 200 0 chr6 82902261 82902371 -66614666 - L1M5 LINE L1 -1985 4161 4030 1 1217 817 312 75 8 chr6 82902374 82902626 -66614411 + B4A SINE B4 1 269 -23 1 1217 771 11 0 0 chr6 82902627 82902715 -66614322 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1217 251 282 23 114 chr6 82903192 82903280 -66613757 + ID4_ SINE ID 4 83 0 1 1217 344 298 104 22 chr6 82903321 82903455 -66613582 - B1F SINE Alu -2 147 3 1 1217 295 219 229 0 chr6 82903509 82903605 -66613432 - B1F SINE Alu -31 118 1 1 1217 627 51 0 0 chr6 82903784 82903863 -66613174 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 1 1217 1201 43 28 0 chr6 82903863 82904004 -66613033 - B1_Mus1 SINE Alu -3 145 1 1 1217 1469 101 0 16 chr6 82904029 82904221 -66612816 - B2_Mm2 SINE B2 -6 189 1 1 1217 237 283 0 91 chr6 82904288 82904354 -66612683 - B4A SINE B4 -147 145 86 1 1217 302 271 32 91 chr6 82904354 82904398 -66612639 - L1M5 LINE L1 -2320 3826 3793 1 1217 1200 194 34 10 chr6 82904398 82904606 -66612431 - B3 SINE B2 -1 215 3 1 1217 302 271 32 91 chr6 82904606 82904715 -66612322 - L1M5 LINE L1 -2354 3792 3682 1 1217 738 174 0 0 chr6 82904742 82904880 -66612157 + (TA)n Simple_repeat Simple_repeat 2 139 0 1 1217 2672 262 94 13 chr6 82905152 82905905 -66611132 - Lx8 LINE L1 -390 7083 6270 1 1217 603 285 0 0 chr6 82906021 82906144 -66610893 + ID_B1 SINE B4 87 209 -15 1 1217 973 136 6 25 chr6 82907566 82907725 -66609312 + ORR1A4 LTR MaLR 1 156 -173 1 1217 566 170 28 9 chr6 82907721 82907828 -66609209 - RMER5 LTR ERV1 -305 229 121 1 1217 364 225 0 0 chr6 82907897 82907968 -66609069 - MTD LTR MaLR -55 366 296 1 1217 4202 176 81 32 chr6 82907969 82908899 -66608138 + RMER12 LTR ERVK 1 1381 -191 1 1217 1478 202 8 15 chr6 82909051 82909313 -66607724 - MTD LTR MaLR -147 272 13 1 1217 1052 81 23 70 chr6 82909417 82909589 -66607448 + B2_Mm2 SINE B2 3 166 -29 1 1217 864 304 175 8 chr6 82909828 82910222 -66606815 - MLT1F1 LTR MaLR -26 543 84 1 1217 240 239 102 26 chr6 82910279 82910372 -66606665 + B4 SINE B4 1 97 -68 1 1217 392 287 186 6 chr6 82910351 82910523 -66606514 + B4A SINE B4 31 233 -59 1 1217 755 133 36 16 chr6 82910523 82911146 -66605891 + GA-rich Low_complexity Low_complexity 1 635 0 1 1217 1345 192 222 12 chr6 82911161 82911504 -66605533 + MTD LTR MaLR 1 415 -4 1 1217 240 328 0 15 chr6 82911488 82911556 -66605481 + B4 SINE B4 213 279 -13 1 1217 405 0 0 0 chr6 82911559 82911604 -66605433 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1217 369 388 88 45 chr6 82911828 82912005 -66605032 - LTR33 LTR ERVL -3 512 253 1 1217 596 217 90 7 chr6 82912005 82912149 -66604888 - MER31A LTR ERV1 0 485 330 1 1217 369 388 88 45 chr6 82912149 82912317 -66604720 - LTR33 LTR ERVL -3 252 3 1 1217 1453 275 110 113 chr6 82912451 82912647 -66604390 - MER76 LTR ERVL -6 685 502 1 1217 546 301 20 0 chr6 82912647 82912793 -66604244 - B1F1 SINE Alu 0 149 1 1 1217 1453 275 110 113 chr6 82912793 82913257 -66603780 - MER76 LTR ERVL -190 501 27 1 1217 232 167 119 15 chr6 82913813 82913880 -66603157 + L1M7 LINE L1 1852 1925 -4293 1 1217 745 268 28 23 chr6 82914151 82914327 -66602710 + B3A SINE B2 1 177 -21 1 1217 608 145 33 31 chr6 82914327 82914465 -66602572 - ORR1B1 LTR MaLR 0 421 280 1 1217 284 242 36 128 chr6 82914407 82914555 -66602482 + B4 SINE B4 69 282 -10 1 1217 372 167 0 0 chr6 82914555 82914627 -66602410 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1217 1173 127 11 6 chr6 82914929 82915111 -66601926 - ORR1C2 LTR MaLR 0 384 202 1 1217 1515 179 0 4 chr6 82915111 82915363 -66601674 - Lx2B LINE L1 -276 6724 6474 1 1217 502 253 42 68 chr6 82915361 82915554 -66601483 + Lx2B LINE L1 6723 6914 -62 1 1217 29 28 0 0 chr6 82915554 82915590 -66601447 + AT_rich Low_complexity Low_complexity 1 36 0 1 1217 1188 130 31 0 chr6 82915595 82915787 -66601250 - ORR1C2 LTR MaLR -178 206 9 1 1217 3851 141 70 3 chr6 82915970 82916570 -66600467 + Lx LINE L1 6013 6652 -2 1 1217 501 97 0 0 chr6 82916625 82916697 -66600340 + (GGA)n Simple_repeat Simple_repeat 2 73 0 1 1217 240 255 26 6 chr6 82916947 82917015 -66600022 - PB1D10 SINE Alu -41 79 10 1 1217 934 224 78 0 chr6 82917125 82917317 -66599720 + B3 SINE B2 2 208 -8 1 1217 1355 199 204 3 chr6 82917576 82917914 -66599123 - MTD LTR MaLR -13 406 1 1 1217 405 0 0 0 chr6 82918347 82918392 -66598645 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1217 360 0 0 0 chr6 82918392 82918431 -66598606 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1217 249 321 16 125 chr6 82918431 82918522 -66598515 - B3A SINE B2 -80 118 40 1 1217 914 239 21 21 chr6 82918522 82918714 -66598323 - B3A SINE B2 -6 192 1 1 1217 249 321 16 125 chr6 82918714 82918750 -66598287 - B3A SINE B2 -159 39 5 1 1217 455 250 153 0 chr6 82918943 82919067 -66597970 + B1F SINE Alu 1 143 -6 1 1217 1098 276 177 40 chr6 82919307 82919855 -66597182 + L1MC1 LINE L1 2 624 -5884 1 1217 264 252 58 50 chr6 82919882 82920003 -66597034 + L1MC1 LINE L1 569 690 -5818 1 1217 532 244 65 70 chr6 82920032 82920217 -66596820 + B3A SINE B2 1 184 -9 1 1217 478 250 124 5 chr6 82920280 82920481 -66596556 + L1MC1 LINE L1 683 907 -5601 1 1217 315 85 0 0 chr6 82920483 82920530 -66596507 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1217 760 248 0 0 chr6 82920536 82920677 -66596360 - B1F2 SINE Alu -7 142 2 1 1217 417 186 124 0 chr6 82920910 82921007 -66596030 + B1F2 SINE Alu 29 137 -12 1 1217 207 0 0 0 chr6 82921009 82921032 -66596005 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1217 337 282 26 32 chr6 82922064 82922218 -66594819 + L1M2 LINE L1 1634 1786 -5063 1 1217 726 261 53 23 chr6 82922296 82922548 -66594489 + L1MA4 LINE L1 5635 5931 -369 1 1217 266 257 130 14 chr6 82922656 82922794 -66594243 + L1MC1 LINE L1 1493 1646 -4862 1 1217 1108 122 14 0 chr6 82922827 82922975 -66594062 + B1_Mur4 SINE Alu 1 150 0 1 1217 436 112 25 12 chr6 82922975 82923056 -66593981 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 1 1217 295 297 0 0 chr6 82923057 82923121 -66593916 - B4A SINE B4 -143 149 86 1 1217 291 296 0 0 chr6 82923126 82923207 -66593830 + L1MC1 LINE L1 2016 2096 -4412 1 1217 2542 128 99 93 chr6 82923207 82923359 -66593678 - RLTR19 LTR ERVK -2 497 327 1 1217 1189 85 11 0 chr6 82923359 82923535 -66593502 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1217 297 0 0 0 chr6 82923536 82923569 -66593468 + (GAGAA)n Simple_repeat Simple_repeat 1 33 0 1 1217 2542 128 99 93 chr6 82923569 82923834 -66593203 - RLTR19 LTR ERVK -173 326 63 1 1217 1276 28 14 0 chr6 82923834 82923979 -66593058 + B1_Mus1 SINE Alu 1 147 -1 1 1217 480 35 0 0 chr6 82923982 82924040 -66592997 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 1 1217 621 40 0 0 chr6 82924042 82924118 -66592919 + (GAAAA)n Simple_repeat Simple_repeat 4 79 0 1 1217 2542 128 99 93 chr6 82924118 82924183 -66592854 - RLTR19 LTR ERVK -437 62 2 1 1217 226 87 0 42 chr6 82924183 82924231 -66592806 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1217 720 54 0 0 chr6 82924231 82924324 -66592713 + (GA)n Simple_repeat Simple_repeat 1 93 0 1 1217 357 288 24 7 chr6 82924394 82924532 -66592505 + ID4 SINE ID 6 146 -6 1 1217 706 245 21 7 chr6 82924668 82924812 -66592225 + RSINE1 SINE B4 17 162 -3 1 1217 24 0 0 0 chr6 82924819 82924843 -66592194 + AT_rich Low_complexity Low_complexity 1 24 0 1 1217 1421 80 5 55 chr6 82924854 82925053 -66591984 + B2_Mm1t SINE B2 3 191 -2 1 1217 554 274 108 0 chr6 82925054 82925240 -66591797 + L1MC1 LINE L1 2415 2620 -3701 1 1217 180 0 0 0 chr6 82925318 82925338 -66591699 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 1217 853 187 8 0 chr6 82925341 82925475 -66591562 + B1_Mur2 SINE Alu 5 139 -10 1 1217 640 223 8 15 chr6 82925487 82925619 -66591418 - B3 SINE B2 -6 210 80 1 1217 655 253 40 10 chr6 82925627 82925871 -66591166 + L1MC1 LINE L1 2681 2930 -3391 1 1217 1054 103 147 0 chr6 82925871 82926027 -66591010 + B2_Mm1t SINE B2 2 180 -13 1 1217 387 127 316 35 chr6 82926079 82926193 -66590844 + B2_Mm1t SINE B2 48 193 0 1 1217 311 235 12 0 chr6 82926197 82926278 -66590759 + L1MC1 LINE L1 2917 2998 -3323 1 1217 458 265 69 0 chr6 82926279 82926381 -66590656 + PB1D9 SINE Alu 3 111 -9 1 1217 450 0 0 0 chr6 82926381 82926431 -66590606 + (CATA)n Simple_repeat Simple_repeat 4 53 0 1 1217 891 185 16 39 chr6 82926545 82926744 -66590293 + B3 SINE B2 6 195 0 1 1217 1055 229 159 14 chr6 82926748 82927016 -66590021 + L1MC1 LINE L1 3117 3429 -2892 1 1217 505 0 31 0 chr6 82927016 82927081 -66589956 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1217 1055 212 125 55 chr6 82927081 82927383 -66589654 + L1MC1 LINE L1 3430 3592 -2729 1 1217 565 173 113 45 chr6 82927384 82927517 -66589520 + B1F SINE Alu 6 147 -2 1 1217 238 297 112 73 chr6 82927388 82927566 -66589471 - YREP_Mm Unknown Unknown -1500 312 128 1 1217 320 263 107 21 chr6 82928065 82928205 -66588832 + L1MC1 LINE L1 4672 4823 -1498 1 1217 1300 282 62 13 chr6 82928252 82928856 -66588181 + L1MC1 LINE L1 4740 5402 -919 1 1217 698 209 191 6 chr6 82928856 82929034 -66588003 + B3 SINE B2 1 211 -5 1 1217 892 281 92 57 chr6 82929034 82929419 -66587618 + L1MC1 LINE L1 5403 5759 -760 1 1217 1790 251 19 11 chr6 82929419 82929793 -66587244 + MTEa LTR MaLR 1 377 -2 1 1217 892 272 111 11 chr6 82929793 82929936 -66587101 + L1MC1 LINE L1 5760 5914 -605 1 1217 964 251 159 62 chr6 82929965 82930317 -66586720 - Lx8 LINE L1 0 7473 7088 1 1217 751 280 8 29 chr6 82930317 82930560 -66586477 + L1MC1 LINE L1 5913 6150 -358 1 1217 365 299 0 0 chr6 82930560 82930637 -66586400 + ID4_ SINE ID 2 78 -5 1 1217 681 318 15 37 chr6 82930637 82930720 -66586317 + L1MC1 LINE L1 6151 6232 -1728 1 1217 612 298 108 14 chr6 82930761 82931047 -66585990 + L1MC1 LINE L1 6196 6508 0 1 1217 1007 240 0 10 chr6 82932051 82932245 -66584792 + B3 SINE B2 20 211 -5 1 1217 456 261 95 9 chr6 82932278 82932394 -66584643 + ID_B1 SINE B4 80 205 -19 1 1217 309 135 0 0 chr6 82932394 82932446 -66584591 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 1 1217 21 36 0 0 chr6 82932596 82932624 -66584413 + AT_rich Low_complexity Low_complexity 1 28 0 1 1217 559 307 83 55 chr6 82933376 82933669 -66583368 - B4 SINE B4 0 292 8 1 1217 307 297 40 0 chr6 82933698 82933772 -66583265 - ID4 SINE ID -1 82 6 1 1217 1392 202 73 57 chr6 82933834 82934193 -66582844 + ORR1D1 LTR MaLR 1 367 -7 1 1217 2071 105 108 0 chr6 82934193 82934488 -66582549 + ORR1A2 LTR MaLR 1 327 0 1 1217 698 255 18 18 chr6 82934497 82934677 -66582360 + B3A SINE B2 39 198 0 1 1217 1851 128 7 0 chr6 82934693 82934962 -66582075 - ORR1B1 LTR MaLR 0 394 124 1 1217 3079 158 37 10 chr6 82934962 82935396 -66581641 + RLTR20C LTR ERVK 1 434 -100 1 1217 477 0 0 0 chr6 82935396 82935449 -66581588 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1217 3079 158 37 10 chr6 82935449 82935533 -66581504 + RLTR20C LTR ERVK 435 532 -2 1 1217 904 182 11 40 chr6 82935533 82935661 -66581376 - ORR1B1 LTR MaLR -271 123 1 1 1217 236 264 97 37 chr6 82935712 82935846 -66581191 + L1M5 LINE L1 4484 4625 -1521 1 1217 630 212 8 17 chr6 82935858 82935978 -66581059 - PB1D7 SINE Alu -1 119 1 1 1217 1573 54 16 0 chr6 82936274 82936460 -66580577 + B2_Mm2 SINE B2 1 189 -6 1 1217 387 337 131 33 chr6 82936540 82936960 -66580077 + L1M5 LINE L1 4751 5211 -935 1 1217 295 296 93 29 chr6 82937476 82937615 -66579422 - L3 LINE CR1 -963 3526 3379 1 1217 354 247 14 0 chr6 82937616 82937689 -66579348 - L3 LINE CR1 -1271 3218 3145 1 1217 306 315 53 37 chr6 82938110 82938278 -66578759 - L1ME1 LINE L1 0 6179 6007 1 1217 324 0 0 0 chr6 82938278 82938314 -66578723 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1217 661 287 1030 21 chr6 82938314 82938366 -66578671 - L1ME1 LINE L1 -248 5931 5909 1 1217 252 0 0 0 chr6 82938366 82938394 -66578643 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1217 661 252 174 0 chr6 82938394 82938612 -66578425 - L1ME1 LINE L1 -271 5908 5650 1 1217 907 159 14 0 chr6 82938681 82938819 -66578218 + B1_Mus2 SINE Alu 1 140 -7 1 1217 1776 11 16 0 chr6 82938846 82939035 -66578002 + B2_Mm1a SINE B2 2 193 0 1 1217 341 249 88 110 chr6 82939040 82939251 -66577786 - L1ME1 LINE L1 -3996 2246 2024 1 1217 896 228 56 10 chr6 82939251 82939446 -66577591 + B3 SINE B2 1 204 -12 1 1217 341 249 88 110 chr6 82939446 82939463 -66577574 - L1ME1 LINE L1 -4219 2023 2015 1 1217 1016 148 0 26 chr6 82939463 82939616 -66577421 + B1_Mur1 SINE Alu 1 149 0 1 1217 341 249 88 110 chr6 82939616 82939751 -66577286 - L1ME1 LINE L1 -4228 2014 1890 1 1217 374 200 49 98 chr6 82939753 82939810 -66577227 - L1MEf LINE L1 -4292 1908 1856 1 1217 1407 79 39 0 chr6 82939810 82939988 -66577049 + B2_Mm2 SINE B2 2 186 -9 1 1217 374 200 49 98 chr6 82939988 82940052 -66576985 - L1MEf LINE L1 -4345 1855 1793 1 1217 552 262 55 110 chr6 82940104 82940340 -66576697 - ID_B1 SINE B4 0 224 2 1 1217 287 306 9 43 chr6 82940340 82940374 -66576663 - B3 SINE B2 -184 32 3 1 1217 868 276 76 23 chr6 82940390 82940783 -66576254 - L1MEf LINE L1 -4588 1612 1199 1 1217 834 181 7 28 chr6 82941656 82941798 -66575239 - B1_Mur1 SINE Alu -6 143 5 1 1217 383 296 44 0 chr6 82941806 82941941 -66575096 - L1MEf LINE L1 -5000 1200 1060 1 1217 475 247 29 35 chr6 82941950 82942102 -66574935 + PB1D7 SINE Alu 8 148 -1 1 1217 441 0 0 0 chr6 82942234 82942283 -66574754 + (CTTG)n Simple_repeat Simple_repeat 1 49 0 1 1217 1021 266 10 0 chr6 82942301 82942508 -66574529 - ID_B1 SINE B4 -13 211 3 1 1217 585 297 67 112 chr6 82942508 82942533 -66574504 - L1MEf LINE L1 -5152 1048 1027 1 1217 2067 63 30 4 chr6 82942533 82942804 -66574233 - L1_Mus3 LINE L1 -4 6634 6357 1 1217 585 297 67 112 chr6 82942804 82943011 -66574026 - L1MEf LINE L1 -5174 1026 835 1 1217 841 169 256 0 chr6 82943011 82943183 -66573854 - B3 SINE B2 0 216 1 1 1217 585 297 67 112 chr6 82943183 82943492 -66573545 - L1MEf LINE L1 -5366 834 530 1 1217 486 0 0 0 chr6 82943576 82943630 -66573407 + (TTG)n Simple_repeat Simple_repeat 2 55 0 1 1217 876 168 0 28 chr6 82943630 82943771 -66573266 - B1_Mur2 SINE Alu -11 138 2 1 1217 255 294 89 20 chr6 82943771 82943917 -66573120 - L1MEf LINE L1 -5592 502 347 1 1217 718 242 31 0 chr6 82943922 82944083 -66572954 + B4A SINE B4 121 286 -6 1 1217 460 263 0 109 chr6 82944162 82944290 -66572747 + RSINE1 SINE B4 26 139 -26 1 1217 215 93 23 0 chr6 82944290 82944333 -66572704 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1217 476 216 35 18 chr6 82944698 82944811 -66572226 + RSINE1 SINE B4 43 157 -8 1 1217 408 267 84 0 chr6 82945084 82945215 -66571822 - B1F SINE Alu 0 149 8 1 1217 868 196 160 16 chr6 82945299 82945543 -66571494 - B4 SINE B4 -13 279 1 1 1217 654 13 0 0 chr6 82945607 82945682 -66571355 + (TTC)n Simple_repeat Simple_repeat 3 77 0 1 1217 1175 28 42 0 chr6 82945723 82945865 -66571172 + B1_Mus1 SINE Alu 1 148 0 1 1217 1277 54 53 23 chr6 82945901 82946072 -66570965 + B2_Mm2 SINE B2 5 180 -15 1 1217 243 0 0 0 chr6 82946072 82946099 -66570938 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1217 1027 102 7 0 chr6 82946099 82946236 -66570801 + B1_Mus1 SINE Alu 3 140 -8 1 1217 216 0 0 0 chr6 82946236 82946260 -66570777 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1217 1153 212 76 16 chr6 82946524 82946773 -66570264 - ORR1D2 LTR MaLR -5 365 102 1 1217 995 250 0 32 chr6 82947200 82947419 -66569618 + ID_B1 SINE B4 2 213 -11 1 1217 249 264 144 68 chr6 82948173 82948291 -66568746 - B3 SINE B2 -83 133 7 1 1217 1035 189 9 74 chr6 82948422 82948651 -66568386 + B3 SINE B2 3 216 0 1 1217 342 0 0 0 chr6 82948784 82948822 -66568215 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1217 696 220 21 14 chr6 82949176 82949319 -66567718 - B1_Mur1 SINE Alu -5 144 1 1 1217 317 120 0 20 chr6 82949403 82949454 -66567583 - HAL1-2a_MD LINE L1 -631 2393 2344 1 1217 863 223 85 15 chr6 82949561 82949761 -66567276 - B3 SINE B2 -2 214 1 1 1217 1086 214 61 58 chr6 82950787 82951100 -66565937 - RLTRETN_Mm LTR ERVK -8 314 1 1 1217 398 288 138 23 chr6 82951147 82951186 -66565851 - B2_Mm2 SINE B2 -1 194 151 1 1217 234 0 0 0 chr6 82951186 82951212 -66565825 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1217 584 203 151 23 chr6 82951212 82951346 -66565691 - B3A SINE B2 -45 150 1 1 1217 274 259 38 101 chr6 82951631 82951790 -66565247 - L1M5 LINE L1 -301 5823 5675 1 1217 27 29 0 0 chr6 82951838 82951872 -66565165 + AT_rich Low_complexity Low_complexity 1 34 0 1 1217 424 268 79 24 chr6 82951879 82952005 -66565032 + B1F SINE Alu 9 141 -8 1 1217 673 159 6 194 chr6 82952032 82952212 -66564825 + B1_Mur1 SINE Alu 3 148 -1 1 1217 738 221 7 14 chr6 82952233 82952375 -66564662 + B1_Mur2 SINE Alu 3 143 -6 1 1217 395 242 11 11 chr6 82952413 82952505 -66564532 + B3A SINE B2 30 121 -77 1 1217 861 214 84 16 chr6 82952560 82952750 -66564287 + B3 SINE B2 3 205 -11 1 1217 3553 15 5 0 chr6 82952757 82953151 -66563886 - MTA_Mm LTR MaLR 0 396 1 1 1217 924 217 42 24 chr6 82953171 82953383 -66563654 - B3 SINE B2 0 216 1 1 1217 763 280 25 20 chr6 82953441 82953638 -66563399 - B3A SINE B2 0 198 1 1 1217 732 246 82 34 chr6 82954248 82954454 -66562583 + B3 SINE B2 1 216 0 1 1217 623 229 0 90 chr6 82954706 82954850 -66562187 + ID_B1 SINE B4 94 224 0 1 1217 180 0 0 0 chr6 82955794 82955814 -66561223 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1217 517 264 30 59 chr6 82956770 82956939 -66560098 - RSINE1 SINE B4 0 165 2 1 1217 448 248 42 17 chr6 82957172 82957291 -66559746 + RSINE1 SINE B4 25 146 -19 1 1217 366 42 0 0 chr6 82957298 82957346 -66559691 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1217 237 65 0 0 chr6 82957525 82957556 -66559481 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1217 662 264 86 27 chr6 82957895 82958040 -66558997 + B3A SINE B2 1 145 -53 1 1217 411 73 0 0 chr6 82958040 82958095 -66558942 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1217 662 264 86 27 chr6 82958095 82958136 -66558901 + B3A SINE B2 146 198 0 1 1217 799 235 0 26 chr6 82958147 82958300 -66558737 + B1_Mur1 SINE Alu 1 149 0 1 1217 783 197 36 47 chr6 82958405 82958597 -66558440 + B3A SINE B2 4 193 -5 1 1217 300 175 78 16 chr6 82958996 82959060 -66557977 - ID4_ SINE ID -14 69 2 1 1217 315 0 0 0 chr6 82959064 82959099 -66557938 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1217 306 266 73 21 chr6 82959109 82959205 -66557832 - B1F SINE Alu -9 140 40 1 1217 263 0 85 0 chr6 82959224 82959271 -66557766 + (TTG)n Simple_repeat Simple_repeat 2 52 0 1 1217 393 164 0 47 chr6 82959278 82959342 -66557695 - ID_B1 SINE B4 -13 211 151 1 1217 226 309 65 102 chr6 82959342 82959386 -66557651 - PB1D10 SINE Alu -13 104 1 1 1217 836 199 7 20 chr6 82959427 82959576 -66557461 - B1_Mur3 SINE Alu 0 149 3 1 1217 1304 223 154 37 chr6 82959765 82959935 -66557102 + MTD LTR MaLR 1 180 -239 1 1217 2814 112 12 71 chr6 82959935 82960425 -66556612 + RMER6B LTR ERVK 1 461 0 1 1217 1304 223 154 37 chr6 82960425 82960554 -66556483 + MTD LTR MaLR 181 341 -78 1 1217 189 0 0 0 chr6 82960554 82960575 -66556462 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 1 1217 1304 223 154 37 chr6 82960575 82960624 -66556413 + MTD LTR MaLR 342 391 -28 1 1217 228 130 0 0 chr6 82960695 82960741 -66556296 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 1 1217 204 40 0 0 chr6 82960937 82960962 -66556075 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1217 447 331 70 5 chr6 82961103 82961288 -66555749 - B3A SINE B2 0 198 2 1 1217 546 91 0 0 chr6 82961681 82961758 -66555279 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 1 1217 807 207 0 7 chr6 82961761 82961907 -66555130 - B1_Mur1 SINE Alu -3 146 2 1 1217 324 0 0 0 chr6 82962238 82962274 -66554763 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1217 237 288 56 77 chr6 82962604 82962741 -66554296 - L3 LINE CR1 -2169 2320 2186 1 1217 234 0 0 0 chr6 82962741 82962767 -66554270 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1217 420 130 0 0 chr6 82962772 82962841 -66554196 + (GA)n Simple_repeat Simple_repeat 1 69 0 1 1217 411 21 0 0 chr6 82962889 82962937 -66554100 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1217 496 297 76 43 chr6 82962942 82963153 -66553884 - B4A SINE B4 -74 218 1 1 1217 798 188 35 0 chr6 82963955 82964099 -66552938 - B1_Mur2 SINE Alu 0 149 1 1 1217 219 88 0 0 chr6 82964128 82964162 -66552875 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1217 260 139 0 0 chr6 82964178 82964214 -66552823 - RSINE1 SINE B4 -36 129 94 1 1217 226 341 0 75 chr6 82964213 82964346 -66552691 + RSINE1 SINE B4 43 165 0 1 1217 218 152 17 0 chr6 82964346 82964405 -66552632 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1217 347 267 212 7 chr6 82964534 82964685 -66552352 - L1MEg1 LINE L1 -5494 741 560 1 1217 297 75 0 0 chr6 82965570 82965610 -66551427 + (TTCTG)n Simple_repeat Simple_repeat 1 40 0 1 1217 2253 196 107 27 chr6 82965718 82966231 -66550806 - RMER15 LTR ERVL 0 575 22 1 1217 304 246 0 0 chr6 82966276 82966333 -66550704 - RMER15 LTR ERVL -515 60 4 1 1217 724 233 0 8 chr6 82966507 82966641 -66550396 - B1_Mur1 SINE Alu -14 135 3 1 1217 419 276 240 20 chr6 82966657 82966857 -66550180 - MIR SINE MIR -10 252 9 1 1217 478 266 84 28 chr6 82967222 82967365 -66549672 - L3 LINE CR1 -3448 1041 891 1 1217 183 332 182 27 chr6 82967660 82967880 -66549157 + L2b LINE L2 2919 3172 -203 1 1217 2033 131 45 85 chr6 82968195 82968266 -66548771 - ORR1C1 LTR MaLR -14 364 322 1 1217 994 167 0 0 chr6 82968266 82968416 -66548621 + B1_Mur4 SINE Alu 1 150 0 1 152 2033 131 45 85 chr6 82968416 82968719 -66548318 - ORR1C1 LTR MaLR -57 321 5 1 1218 645 243 0 21 chr6 82968789 82968932 -66548105 - B1F SINE Alu -1 148 9 1 1218 306 125 0 0 chr6 82969046 82969094 -66547943 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 1 1218 2210 162 65 3 chr6 82969152 82969523 -66547514 + ORR1B1 LTR MaLR 1 394 0 1 1218 1268 168 14 0 chr6 82969569 82969778 -66547259 + B3 SINE B2 2 213 -3 1 1218 1725 268 63 47 chr6 82969781 82970372 -66546665 - Lx8 LINE L1 -359 7114 6515 1 1218 261 286 0 0 chr6 82970380 82970471 -66546566 - L1M4 LINE L1 -3151 2995 2905 1 1218 370 284 79 7 chr6 82970502 82970675 -66546362 - L1M4 LINE L1 -3308 2835 2653 1 1218 603 326 72 86 chr6 82970719 82971078 -66545959 - ORR1E LTR MaLR 0 359 6 1 1218 735 203 68 0 chr6 82971599 82971732 -66545305 - B1_Mur1 SINE Alu -6 143 2 1 1218 616 226 170 62 chr6 82972308 82972549 -66544488 - ORR1E LTR MaLR -4 355 89 1 1218 817 237 121 0 chr6 82973420 82973593 -66543444 - B3 SINE B2 -21 195 2 1 1218 393 269 83 9 chr6 82974940 82975049 -66541988 - PB1D10 SINE Alu 0 117 1 1 1218 1187 168 0 43 chr6 82975139 82975350 -66541687 - B3 SINE B2 -1 215 14 1 1218 241 337 87 93 chr6 82975345 82975528 -66541509 + B4A SINE B4 86 267 -25 1 1218 1203 90 0 0 chr6 82975557 82975839 -66541198 + (CA)n Simple_repeat Simple_repeat 1 282 0 1 1218 771 207 90 0 chr6 82976414 82976701 -66540336 - ORR1C2 LTR MaLR 0 384 1 1 1218 212 356 0 19 chr6 82977615 82977718 -66539319 + CT-rich Low_complexity Low_complexity 1 101 0 1 1218 301 324 41 90 chr6 82978773 82978861 -66538176 - PB1D10 SINE Alu 0 117 38 1 1218 243 0 0 0 chr6 82978861 82978888 -66538149 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1218 383 0 21 0 chr6 82978888 82978934 -66538103 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1218 301 324 41 90 chr6 82978934 82978966 -66538071 - PB1D10 SINE Alu -80 37 3 1 1218 569 229 46 0 chr6 82979274 82979383 -66537654 + PB1D7 SINE Alu 1 114 -6 1 1218 204 40 0 0 chr6 82983466 82983491 -66533546 + (CGGGG)n Simple_repeat Simple_repeat 5 29 0 1 1218 195 284 73 12 chr6 82985956 82986038 -66530999 + MIR3 SINE MIR 81 167 -41 1 1218 252 276 0 0 chr6 82986479 82986537 -66530500 + GA-rich Low_complexity Low_complexity 3 60 0 1 1218 244 345 86 70 chr6 82986544 82986731 -66530306 + L3 LINE CR1 4072 4261 -228 1 1218 200 308 39 0 chr6 82987009 82987061 -66529976 + MIR SINE MIR 91 144 -64 1 1218 333 0 0 0 chr6 82987632 82987669 -66529368 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1218 850 199 17 19 chr6 82987804 82987992 -66529045 - B3 SINE B2 -14 202 9 1 1218 186 43 0 0 chr6 82989251 82989274 -66527763 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1218 586 68 59 0 chr6 82989436 82989530 -66527507 + B1_Mm SINE Alu 1 147 0 1 1218 210 24 70 23 chr6 82989530 82989573 -66527464 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1218 241 262 52 139 chr6 82989680 82989853 -66527184 - MLT1E LTR MaLR -110 543 386 1 1218 278 284 94 66 chr6 82990910 82991091 -66525946 - L2 LINE L2 -428 2991 2806 1 1218 532 273 43 7 chr6 82991110 82991250 -66525787 - RSINE1 SINE B4 -19 146 2 1 1218 388 257 35 9 chr6 82991266 82991380 -66525657 - PB1D10 SINE Alu 0 117 1 1 1218 392 37 0 18 chr6 82991448 82991503 -66525534 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1218 427 301 32 24 chr6 82991504 82991630 -66525407 - RSINE1 SINE B4 -25 140 14 1 1218 216 231 0 0 chr6 82991916 82991971 -66525066 - MIRc SINE MIR -117 159 102 1 1218 256 283 131 0 chr6 82991986 82992085 -66524952 - PB1D10 SINE Alu -5 112 1 1 1218 234 275 67 111 chr6 82992271 82992334 -66524703 + YREP_Mm Unknown Unknown 159 326 -1482 1 1218 728 175 83 0 chr6 82992307 82992427 -66524610 - B1_Mm SINE Alu -12 135 6 1 1218 373 238 35 106 chr6 82992334 82992447 -66524590 - MT2B LTR ERVL -344 257 153 1 1218 812 230 26 58 chr6 82992640 82992806 -66524231 + B3A SINE B2 1 167 -31 1 1218 459 0 0 0 chr6 82992806 82992857 -66524180 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1218 812 230 26 58 chr6 82992857 82992879 -66524158 + B3A SINE B2 168 183 -15 1 1218 379 261 33 43 chr6 82992909 82993001 -66524036 + B1F SINE Alu 1 91 -58 1 1218 624 138 0 0 chr6 82993186 82993280 -66523757 + B1_Mus1 SINE Alu 1 94 -54 1 1218 413 236 0 98 chr6 82993188 82993310 -66523727 + MT2B LTR ERVL 167 276 -325 1 1218 316 337 0 11 chr6 82993284 82993374 -66523663 + PB1D9 SINE Alu 22 110 -10 1 1218 1048 83 13 33 chr6 82995169 82995319 -66521718 - B1_Mus2 SINE Alu 0 147 1 1 1218 366 178 0 268 chr6 82995352 82995413 -66521624 + B3A SINE B2 1 36 -162 1 1218 1171 95 0 0 chr6 82995413 82995560 -66521477 + B1_Mus1 SINE Alu 2 148 0 1 1218 366 181 1 265 chr6 82995560 82995637 -66521400 + B3A SINE B2 35 105 -111 1 1218 1209 61 0 0 chr6 82995840 82995987 -66521050 + B1_Mm SINE Alu 1 147 0 1 1218 312 27 0 0 chr6 82996446 82996483 -66520554 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1218 351 323 0 0 chr6 82996499 82996629 -66520408 + CT-rich Low_complexity Low_complexity 2 131 0 1 1218 375 154 0 0 chr6 82996632 82996697 -66520340 + (TCTCTG)n Simple_repeat Simple_repeat 1 65 0 1 1218 313 121 0 134 chr6 82996699 82996766 -66520271 - B1_Mur4 SINE Alu -90 60 3 1 1218 692 179 68 41 chr6 82997548 82997694 -66519343 + B1_Mur4 SINE Alu 1 150 0 1 1218 333 0 0 0 chr6 82998254 82998291 -66518746 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1218 23 0 0 0 chr6 83001283 83001306 -66515731 + AT_rich Low_complexity Low_complexity 1 23 0 1 1218 215 133 22 0 chr6 83002323 83002368 -66514669 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1218 316 191 0 22 chr6 83002359 83002450 -66514587 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 1218 234 0 0 0 chr6 83002888 83002914 -66514123 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 4 1218 246 136 0 0 chr6 83004565 83004609 -66512428 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1218 258 274 0 40 chr6 83005412 83005488 -66511549 + CT-rich Low_complexity Low_complexity 1 73 0 6 1218 325 291 8 83 chr6 83010016 83010136 -66506901 + Charlie4z DNA MER1_type 55 165 -2 7 1218 288 0 0 0 chr6 83010607 83010639 -66506398 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1218 212 289 0 0 chr6 83011173 83011225 -66505812 - ID2 SINE ID -5 78 27 9 1218 452 249 146 111 chr6 83011597 83011877 -66505160 - B4A SINE B4 0 292 3 1 1218 431 280 0 0 chr6 83011878 83011971 -66505066 - PB1D10 SINE Alu -5 112 20 1 1218 241 295 24 104 chr6 83011895 83012020 -66505017 - MT2B2 LTR ERVL -333 251 137 1 1218 660 202 0 9 chr6 83012195 83012310 -66504727 - PB1D9 SINE Alu -6 114 1 1 1218 1029 215 30 0 chr6 83012457 83012657 -66504380 - B3 SINE B2 -9 207 2 1 1218 570 242 0 31 chr6 83012889 83013017 -66504020 - B1F SINE Alu -14 135 12 1 1218 211 299 0 29 chr6 83012963 83013032 -66504005 - B4A SINE B4 -142 150 84 1 1218 408 318 91 0 chr6 83013787 83013890 -66503147 - B4A SINE B4 -103 189 85 1 1218 342 0 0 0 chr6 83013890 83013928 -66503109 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1218 408 332 94 0 chr6 83013928 83013993 -66503044 - B4A SINE B4 -208 84 4 1 1218 890 320 84 6 chr6 83014050 83014361 -66502676 - MER2 DNA MER2_type -10 335 1 1 1218 722 216 44 7 chr6 83015012 83015147 -66501890 + B1_Mur2 SINE Alu 2 141 -8 2 1218 767 219 88 44 chr6 83015166 83015371 -66501666 + B3 SINE B2 3 216 0 2 1218 26 0 0 0 chr6 83015373 83015399 -66501638 + AT_rich Low_complexity Low_complexity 1 26 0 2 1218 733 240 187 0 chr6 83015414 83015639 -66501398 + B4 SINE B4 1 267 -25 2 1218 246 32 0 0 chr6 83015650 83015681 -66501356 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1218 387 0 0 0 chr6 83015681 83015723 -66501314 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1218 431 279 54 0 chr6 83015896 83016025 -66501012 - ID_B1 SINE B4 -11 213 78 2 1218 1257 70 57 23 chr6 83016848 83017023 -66500014 + B2_Mm2 SINE B2 1 181 -14 2 1218 21 45 0 22 chr6 83017023 83017040 -66499997 + AT_rich Low_complexity Low_complexity 1 17 0 2 1218 1183 70 0 0 chr6 83017040 83017183 -66499854 - B1_Mus2 SINE Alu 0 147 5 2 1218 21 45 0 22 chr6 83017183 83017211 -66499826 + AT_rich Low_complexity Low_complexity 1 28 0 3 1218 495 284 67 0 chr6 83017571 83017705 -66499332 - RSINE1 SINE B4 0 165 23 3 1218 22 0 0 0 chr6 83019021 83019043 -66497994 + GC_rich Low_complexity Low_complexity 1 22 0 3 1218 318 327 0 38 chr6 83022630 83022735 -66494302 - PB1D10 SINE Alu -9 108 8 3 1218 474 209 0 122 chr6 83023036 83023167 -66493870 - B1_Mus2 SINE Alu 0 150 35 3 1218 306 0 0 0 chr6 83023249 83023283 -66493754 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1218 421 233 47 0 chr6 83023283 83023369 -66493668 - RSINE1 SINE B4 -73 92 3 3 1218 300 120 38 0 chr6 83023463 83023530 -66493507 - ID2 SINE ID -9 74 2 3 1218 913 174 0 0 chr6 83023920 83024058 -66492979 + B1_Mur4 SINE Alu 1 138 -12 3 1218 363 44 0 0 chr6 83024058 83024103 -66492934 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 3 1218 226 283 29 29 chr6 83024134 83024236 -66492801 + YREP_Mm Unknown Unknown 193 294 -1518 4 1218 482 186 12 0 chr6 83024155 83024241 -66492796 - ID_B1 SINE B4 -39 185 99 4 1218 408 267 188 32 chr6 83024348 83024534 -66492503 - B3 SINE B2 -1 215 1 4 1218 240 213 161 9 chr6 83024694 83024787 -66492250 + PB1D7 SINE Alu 14 115 -5 4 1218 445 296 64 26 chr6 83024800 83024956 -66492081 + B4 SINE B4 16 177 -115 4 1218 539 286 52 23 chr6 83025092 83025264 -66491773 - B3A SINE B2 0 198 22 4 1218 22 0 0 0 chr6 83025275 83025297 -66491740 + AT_rich Low_complexity Low_complexity 1 22 0 4 1218 779 169 49 14 chr6 83025310 83025454 -66491583 + B1_Mur2 SINE Alu 1 149 0 4 1218 1055 84 7 27 chr6 83025483 83025630 -66491407 + B1_Mus1 SINE Alu 5 148 0 4 1218 190 296 56 0 chr6 83025868 83025922 -66491115 - L2 LINE L2 -525 2894 2838 4 1218 345 214 12 23 chr6 83025928 83026014 -66491023 - B3 SINE B2 0 216 132 5 1218 674 263 23 11 chr6 83026018 83026195 -66490842 - B3 SINE B2 -36 180 2 5 1218 852 179 28 0 chr6 83026326 83026471 -66490566 - B1_Mur3 SINE Alu 0 149 1 5 1218 397 186 34 23 chr6 83026505 83026593 -66490444 - ID_B1 SINE B4 0 224 136 5 1218 256 219 101 30 chr6 83026506 83026605 -66490432 - B1_Mur1 SINE Alu 0 149 44 5 1218 341 98 458 12 chr6 83026624 83026707 -66490330 - PB1D9 SINE Alu 0 120 1 5 1218 1119 101 0 0 chr6 83026725 83026873 -66490164 - B1_Mus1 SINE Alu 0 148 1 5 1218 354 314 7 22 chr6 83026882 83027019 -66490018 - L1MA10 LINE L1 -4 6330 6196 5 1218 222 309 115 31 chr6 83027036 83027166 -66489871 - L2 LINE L2 -600 2819 2679 4 1218 510 275 7 51 chr6 83030185 83030323 -66486714 + B1F SINE Alu 18 149 0 5 1218 451 276 24 106 chr6 83030345 83030515 -66486522 + B4 SINE B4 11 166 -126 5 1218 951 221 89 23 chr6 83031335 83031555 -66485482 - RMER6B LTR ERVK 0 461 222 6 1218 462 36 0 0 chr6 83031555 83031611 -66485426 + (TC)n Simple_repeat Simple_repeat 2 57 0 6 1218 951 221 89 23 chr6 83031611 83031649 -66485388 - RMER6B LTR ERVK -240 221 186 6 1218 1029 58 0 7 chr6 83031637 83031777 -66485260 - B1_Mus2 SINE Alu 0 147 9 6 1218 1069 93 68 47 chr6 83031779 83031970 -66485067 - RMER6B LTR ERVK -251 210 16 6 1218 289 132 88 0 chr6 83032164 83032232 -66484805 + B1_Mus2 SINE Alu 72 145 -2 6 1218 1386 91 37 21 chr6 83032235 83032426 -66484611 + B2_Mm2 SINE B2 2 195 0 6 1218 21 71 0 0 chr6 83033260 83033302 -66483735 + AT_rich Low_complexity Low_complexity 1 42 0 6 1218 294 29 0 0 chr6 83033360 83033395 -66483642 + (TGG)n Simple_repeat Simple_repeat 3 37 0 6 1218 236 291 25 25 chr6 83035127 83035208 -66481829 + PB1D7 SINE Alu 39 119 -1 6 1218 296 129 226 0 chr6 83035243 83035305 -66481732 + B1_Mur2 SINE Alu 72 147 -2 6 1218 21 0 0 0 chr6 83035312 83035333 -66481704 + AT_rich Low_complexity Low_complexity 1 21 0 6 1218 486 0 0 0 chr6 83036646 83036700 -66480337 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1218 866 19 0 18 chr6 83037101 83037210 -66479827 + (CCCCAG)n Simple_repeat Simple_repeat 2 108 0 7 1218 340 218 4 78 chr6 83038645 83038736 -66478301 + ID_B1 SINE B4 79 161 -63 7 1218 317 282 0 66 chr6 83038658 83038749 -66478288 + PB1D10 SINE Alu 9 93 -24 7 1218 766 204 28 0 chr6 83039349 83039491 -66477546 - B1_Mus2 SINE Alu 0 147 2 7 1218 243 182 233 22 chr6 83039512 83039545 -66477492 - B3 SINE B2 0 216 175 7 1218 381 43 0 0 chr6 83039545 83039592 -66477445 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1218 234 0 0 0 chr6 83039592 83039617 -66477420 + (GA)n Simple_repeat Simple_repeat 2 27 0 7 1218 243 182 233 22 chr6 83039617 83039672 -66477365 - B3 SINE B2 -42 174 109 7 1218 1147 83 0 0 chr6 83039672 83039817 -66477220 - B1_Mus1 SINE Alu -3 145 1 7 1218 430 289 73 7 chr6 83039817 83039953 -66477084 - B4A SINE B4 -77 215 71 7 1218 988 99 14 34 chr6 83040280 83040426 -66476611 + B1_Mur3 SINE Alu 3 145 -4 8 1218 265 321 49 0 chr6 83040639 83040720 -66476317 + PB1D10 SINE Alu 6 90 -27 8 1218 453 324 14 0 chr6 83041020 83041162 -66475875 + ID_B1 SINE B4 81 224 0 8 1218 636 318 20 44 chr6 83041225 83041438 -66475599 + B4A SINE B4 3 218 -74 8 1218 423 0 0 0 chr6 83041438 83041485 -66475552 + (TAA)n Simple_repeat Simple_repeat 2 48 0 8 1218 824 183 8 0 chr6 83041492 83041623 -66475414 + B1_Mur1 SINE Alu 1 132 -17 8 1218 636 318 20 44 chr6 83041623 83041651 -66475386 + B4A SINE B4 222 245 -47 8 1218 327 198 29 19 chr6 83041664 83041767 -66475270 + GA-rich Low_complexity Low_complexity 1 104 0 8 1218 254 265 35 140 chr6 83041768 83041882 -66475155 + MT2B LTR ERVL 154 255 -346 8 1218 371 260 54 6 chr6 83041791 83041898 -66475139 + B1_Mur2 SINE Alu 7 114 -6 8 1218 405 0 0 0 chr6 83041987 83042032 -66475005 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1218 335 267 110 32 chr6 83042050 83042205 -66474832 - MER5A DNA MER1_type -20 169 3 9 1218 235 319 77 0 chr6 83042356 83042447 -66474590 - MIRb SINE MIR -88 180 83 9 1218 351 0 0 0 chr6 83043105 83043144 -66473893 + (TC)n Simple_repeat Simple_repeat 2 40 0 9 1218 1000 185 10 41 chr6 83043168 83043365 -66473672 + B3 SINE B2 1 191 -25 9 1218 24 0 0 0 chr6 83043385 83043409 -66473628 + AT_rich Low_complexity Low_complexity 1 24 0 9 1218 602 198 0 9 chr6 83043425 83043532 -66473505 + B1_Mur2 SINE Alu 26 131 -18 9 1218 615 27 0 0 chr6 83043532 83043605 -66473432 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 9 1218 1134 66 0 0 chr6 83043605 83043742 -66473295 - B1_Mm SINE Alu -9 138 2 9 1218 360 0 0 0 chr6 83043750 83043790 -66473247 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 9 1218 1353 80 11 0 chr6 83043790 83043966 -66473071 - B2_Mm1t SINE B2 -13 180 3 9 1218 413 263 167 0 chr6 83044016 83044130 -66472907 + B1_Mur1 SINE Alu 2 134 -15 1 1218 392 284 76 17 chr6 83044153 83044271 -66472766 - RSINE1 SINE B4 -37 128 4 1 1218 479 217 0 0 chr6 83044451 83044543 -66472494 - B1_Mur2 SINE Alu 0 149 58 1 1218 823 140 22 0 chr6 83044552 83044688 -66472349 - B1_Mus2 SINE Alu 0 147 9 1 1218 379 231 52 124 chr6 83044558 83044711 -66472326 - B4 SINE B4 -72 220 79 1 1218 680 270 27 27 chr6 83044706 83044889 -66472148 - B3A SINE B2 0 198 16 1 1218 544 265 88 0 chr6 83044998 83045134 -66471903 + RSINE1 SINE B4 14 161 -4 1 1218 463 249 51 166 chr6 83045178 83045395 -66471642 - B3A SINE B2 -6 192 1 1 1218 220 309 21 11 chr6 83045756 83045800 -66471237 + A-rich Low_complexity Low_complexity 5 48 0 1 1218 572 246 79 7 chr6 83045800 83045939 -66471098 + B1_Mur1 SINE Alu 1 149 0 1 1218 220 309 21 11 chr6 83045939 83045989 -66471048 + A-rich Low_complexity Low_complexity 49 100 0 1 1218 1212 205 131 22 chr6 83046051 83046453 -66470584 - RMER15 LTR ERVL 0 575 83 1 1218 342 0 0 0 chr6 83046783 83046821 -66470216 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1218 324 0 0 0 chr6 83046821 83046856 -66470181 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1218 237 194 121 61 chr6 83046856 83046922 -66470115 - B1_Mur3 SINE Alu -33 116 47 1 1218 1448 75 11 0 chr6 83047164 83047351 -66469686 + B2_Mm1t SINE B2 1 189 -4 1 1218 1097 209 15 0 chr6 83047359 83047565 -66469472 - B3 SINE B2 -5 211 3 1 1218 402 21 0 0 chr6 83047675 83047722 -66469315 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1218 396 210 22 43 chr6 83047722 83047906 -66469131 - RMER17C LTR ERVK -136 274 95 1 1218 378 0 0 0 chr6 83049247 83049289 -66467748 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1218 413 286 0 0 chr6 83049290 83049381 -66467656 - RSINE1 SINE B4 -72 93 3 1 1218 261 0 0 0 chr6 83049549 83049578 -66467459 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 1218 1124 88 0 0 chr6 83049578 83049715 -66467322 - B1_Mus1 SINE Alu -9 139 3 1 1218 366 268 253 6 chr6 83049734 83049892 -66467145 - B3A SINE B2 -1 197 1 1 1218 2579 146 48 52 chr6 83049978 83050432 -66466605 - RLTR28 LTR ERVL -6 518 84 1 1218 309 26 0 0 chr6 83050432 83050470 -66466567 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1218 2579 146 48 52 chr6 83050470 83050535 -66466502 - RLTR28 LTR ERVL -441 83 2 1 1218 353 255 59 0 chr6 83050720 83050822 -66466215 - B1F SINE Alu -12 137 30 1 1218 467 252 30 59 chr6 83051080 83051215 -66465822 + B1_Mur2 SINE Alu 1 131 -18 1 1218 307 157 22 33 chr6 83054039 83054131 -66462906 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1218 236 323 15 0 chr6 83054131 83054196 -66462841 - PB1D9 SINE Alu -54 66 1 1 1218 463 265 113 20 chr6 83054341 83054491 -66462546 + RSINE1 SINE B4 2 165 0 1 1218 243 0 0 0 chr6 83054559 83054586 -66462451 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1218 252 0 0 0 chr6 83054586 83054614 -66462423 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1218 508 228 54 20 chr6 83055919 83056066 -66460971 + B1F SINE Alu 2 142 -5 1 1218 367 253 0 35 chr6 83056246 83056332 -66460705 - PB1D10 SINE Alu -32 85 3 1 1218 1278 41 0 0 chr6 83056385 83056532 -66460505 + B1_Mm SINE Alu 1 147 0 1 1218 970 138 38 0 chr6 83056609 83056768 -66460269 - B2_Mm2 SINE B2 -30 165 1 1 1218 255 253 26 39 chr6 83056768 83056846 -66460191 - ID_B1 SINE B4 -67 157 81 1 1218 285 270 0 39 chr6 83057180 83057257 -66459780 - ID SINE ID -149 75 2 1 1218 228 111 0 0 chr6 83058209 83058245 -66458792 + (GGA)n Simple_repeat Simple_repeat 1 36 0 1 1218 467 248 84 15 chr6 83059962 83060093 -66456944 - B1F SINE Alu -8 141 2 1 1218 756 218 224 0 chr6 83060686 83060860 -66456177 + B3 SINE B2 1 213 -3 1 1218 514 289 188 33 chr6 83060923 83061305 -66455732 - RMER4A LTR ERVK -11 574 17 1 1218 526 252 60 199 chr6 83061470 83061536 -66455501 - B4A SINE B4 -6 286 215 1 1218 191 36 0 35 chr6 83061536 83061565 -66455472 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1218 526 252 60 199 chr6 83061565 83061830 -66455207 - B4A SINE B4 -78 214 1 1 1218 357 82 0 0 chr6 83061852 83061901 -66455136 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1218 2188 137 99 61 chr6 83062080 83062524 -66454513 + RMER6B LTR ERVK 1 461 0 1 1218 1017 67 275 0 chr6 83062531 83062680 -66454357 + B2_Mm2 SINE B2 3 192 -3 1 1218 1280 27 7 0 chr6 83062683 83062829 -66454208 + B1_Mm SINE Alu 1 147 0 1 1218 539 265 41 20 chr6 83063041 83063198 -66453839 + RSINE1 SINE B4 1 161 -4 1 1218 493 246 90 11 chr6 83063202 83063379 -66453658 + MER2 DNA MER2_type 72 262 -83 1 1218 1978 169 101 2 chr6 83063606 83064014 -66453023 - RMER4A LTR ERVK -13 453 6 1 1218 336 48 0 0 chr6 83064074 83064116 -66452921 + (TGAG)n Simple_repeat Simple_repeat 1 42 0 1 1218 607 218 214 16 chr6 83064116 83064298 -66452739 + ID_B1 SINE B4 3 220 -4 1 1218 299 196 77 115 chr6 83064579 83064683 -66452354 + PB1D7 SINE Alu 26 125 -2 1 1218 448 227 151 0 chr6 83064773 83064892 -66452145 - B3A SINE B2 -58 140 4 1 1218 668 195 0 0 chr6 83064910 83065028 -66452009 - PB1D9 SINE Alu -1 119 2 1 1218 234 0 0 0 chr6 83065028 83065054 -66451983 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1 1218 198 0 0 0 chr6 83065078 83065100 -66451937 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1218 460 248 16 8 chr6 83065179 83065305 -66451732 - RSINE1 SINE B4 -36 129 3 1 1218 24 0 0 0 chr6 83065635 83065659 -66451378 + GC_rich Low_complexity Low_complexity 1 24 0 1 1218 205 330 19 9 chr6 83071290 83071397 -66445640 + (CCG)n Simple_repeat Simple_repeat 1 108 0 1 1218 25 31 0 0 chr6 83072110 83072142 -66444895 + GC_rich Low_complexity Low_complexity 1 32 0 1 1218 591 229 56 21 chr6 83072429 83072572 -66444465 - B1_Mur2 SINE Alu -1 148 1 1 1218 616 278 80 10 chr6 83073243 83073443 -66443594 + B3 SINE B2 3 216 0 1 1218 1344 88 66 0 chr6 83073521 83073703 -66443334 - B2_Mm2 SINE B2 0 195 2 1 1218 270 0 0 0 chr6 83073739 83073769 -66443268 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1218 250 268 184 11 chr6 83073769 83073856 -66443181 + PB1D9 SINE Alu 12 113 -7 1 1218 222 128 0 0 chr6 83075478 83075517 -66441520 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 1 1218 256 150 33 16 chr6 83075542 83075603 -66441434 + CT-rich Low_complexity Low_complexity 5 66 0 1 1218 601 234 27 33 chr6 83075932 83076082 -66440955 - B1F SINE Alu 0 149 1 1 1218 782 237 22 38 chr6 83076234 83076418 -66440619 + B3A SINE B2 2 182 -16 1 1218 669 211 28 7 chr6 83076449 83076592 -66440445 + B3 SINE B2 1 146 -70 1 1218 323 169 0 0 chr6 83076586 83076645 -66440392 - B3A SINE B2 -139 59 1 1 1218 483 63 0 0 chr6 83076659 83076722 -66440315 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1 1218 1751 16 0 0 chr6 83076738 83076930 -66440107 + B2_Mm1a SINE B2 2 193 0 1 1218 823 158 0 101 chr6 83077004 83077152 -66439885 - B1_Mus2 SINE Alu -14 133 1 1 1218 1734 21 0 0 chr6 83077163 83077355 -66439682 - B2_Mm1t SINE B2 0 193 2 1 1218 1118 76 0 14 chr6 83077388 83077535 -66439502 + B1_Mus1 SINE Alu 3 147 -1 1 1218 826 191 45 28 chr6 83077542 83077720 -66439317 - B2_Mm2 SINE B2 -14 181 1 1 1218 567 207 0 0 chr6 83077823 83077934 -66439103 - B1_Mus2 SINE Alu -35 112 2 1 1218 909 277 8 3 chr6 83077942 83078159 -66438878 - ID_B1 SINE B4 -1 223 11 1 1218 329 296 152 0 chr6 83078303 83078435 -66438602 - MIRc SINE MIR -105 163 12 1 1218 2038 144 20 69 chr6 83078614 83078966 -66438071 + ORR1C2 LTR MaLR 1 342 -42 1 1218 1388 105 0 5 chr6 83078966 83079157 -66437880 + B2_Mm2 SINE B2 1 190 -5 1 1218 2038 144 20 69 chr6 83079157 83079208 -66437829 + ORR1C2 LTR MaLR 343 384 0 1 1218 324 246 73 48 chr6 83079294 83079418 -66437619 + PB1 SINE Alu 1 127 0 1 1218 219 208 13 89 chr6 83079419 83079452 -66437585 + A-rich Low_complexity Low_complexity 5 32 0 1 1218 932 228 39 5 chr6 83079452 83079655 -66437382 + B3 SINE B2 1 210 -6 1 1218 219 208 13 89 chr6 83079655 83079700 -66437337 + A-rich Low_complexity Low_complexity 33 77 0 1 1218 315 197 150 3 chr6 83079709 83079801 -66437236 + PB1D10 SINE Alu 14 126 -1 1 1218 258 329 0 76 chr6 83080043 83080135 -66436902 - PB1D10 SINE Alu -32 85 1 1 1218 319 329 0 0 chr6 83080054 83080136 -66436901 - ID_B1 SINE B4 -62 162 81 1 1218 1050 137 0 52 chr6 83080107 83080139 -66436898 - B2_Mm2 SINE B2 -12 183 159 1 1218 420 37 0 0 chr6 83080139 83080193 -66436844 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 1 1218 1247 44 0 0 chr6 83080193 83080352 -66436685 - B2_Mm1t SINE B2 -33 160 2 1 1218 858 211 161 5 chr6 83080432 83080618 -66436419 + B3 SINE B2 2 216 0 1 1218 1965 168 69 20 chr6 83080809 83081199 -66435838 + MTC LTR MaLR 10 418 -3 1 1218 636 218 15 0 chr6 83081199 83081331 -66435706 - RSINE1 SINE B4 -30 135 2 1 1218 405 39 0 0 chr6 83081339 83081390 -66435647 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 1 1218 417 285 149 88 chr6 83081861 83082157 -66434880 - MER63B DNA AcHobo 0 436 123 1 1218 555 239 85 43 chr6 83082172 83082360 -66434677 - B3A SINE B2 0 198 3 1 1218 674 143 14 101 chr6 83082397 83082545 -66434492 + B1_Mus2 SINE Alu 11 145 -2 2 1218 363 125 0 0 chr6 83082571 83082643 -66434394 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1218 492 273 53 8 chr6 83082648 83082781 -66434256 - RSINE1 SINE B4 -24 141 3 2 1218 1174 35 28 0 chr6 83082951 83083094 -66433943 - B1_Mus2 SINE Alu 0 147 1 2 1218 484 195 202 8 chr6 83083361 83083485 -66433552 - B1_Mur1 SINE Alu -1 148 1 2 1218 311 263 200 19 chr6 83083598 83083617 -66433420 - B2_Mm2 SINE B2 -6 189 169 2 1218 243 61 0 0 chr6 83083617 83083650 -66433387 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1218 345 263 200 19 chr6 83083650 83083785 -66433252 - B3A SINE B2 -27 168 7 2 1218 239 316 178 15 chr6 83083788 83083812 -66433225 - B4A SINE B4 -49 243 87 2 1218 467 270 0 0 chr6 83083812 83083923 -66433114 - PB1D7 SINE Alu -8 112 2 2 1218 183 250 0 0 chr6 83084159 83084211 -66432826 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1218 189 107 0 0 chr6 83084462 83084490 -66432547 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1218 378 0 0 0 chr6 83084692 83084734 -66432303 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 1218 279 0 0 0 chr6 83084734 83084764 -66432273 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1218 405 0 0 0 chr6 83086517 83086562 -66430475 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1218 216 0 0 0 chr6 83086562 83086585 -66430452 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1218 350 91 18 0 chr6 83086649 83086704 -66430333 + (CCA)n Simple_repeat Simple_repeat 1 56 0 2 1218 225 0 0 0 chr6 83086704 83086729 -66430308 + (CAG)n Simple_repeat Simple_repeat 3 27 0 2 1218 513 314 28 71 chr6 83088423 83088605 -66428432 + ID_B1 SINE B4 2 175 -49 2 1218 681 221 7 7 chr6 83088883 83089020 -66428017 - B1F SINE Alu -8 141 5 2 1218 306 0 0 0 chr6 83089069 83089103 -66427934 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1218 463 214 8 79 chr6 83089104 83089231 -66427806 - RSINE1 SINE B4 -44 121 4 2 1218 263 306 28 75 chr6 83089249 83089265 -66427772 - PB1D9 SINE Alu 0 120 21 2 1218 395 227 22 11 chr6 83089265 83089354 -66427683 - ID_B1 SINE B4 -33 191 102 2 1218 419 270 17 51 chr6 83089606 83089723 -66427314 - B1_Mur3 SINE Alu -30 119 7 2 1218 351 238 98 62 chr6 83090426 83090538 -66426499 + PB1D10 SINE Alu 2 117 0 2 1218 252 0 0 0 chr6 83090538 83090566 -66426471 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1218 651 26 0 0 chr6 83091000 83091077 -66425960 + (TCC)n Simple_repeat Simple_repeat 1 77 0 2 1218 25 0 0 0 chr6 83091219 83091244 -66425793 + AT_rich Low_complexity Low_complexity 1 25 0 2 1218 351 121 0 0 chr6 83091249 83091307 -66425730 + (TGG)n Simple_repeat Simple_repeat 3 60 0 2 1218 514 229 81 8 chr6 83091332 83091455 -66425582 - RSINE1 SINE B4 -31 134 3 2 1218 1169 82 7 0 chr6 83093415 83093562 -66423475 - B1_Mus1 SINE Alu 0 148 1 2 1218 287 259 11 56 chr6 83093594 83093684 -66423353 - B4A SINE B4 0 292 207 2 1218 300 70 0 0 chr6 83093761 83093804 -66423233 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1218 492 281 20 46 chr6 83093806 83093959 -66423078 - RSINE1 SINE B4 -13 152 4 2 1218 964 196 48 26 chr6 83093959 83094183 -66422854 - B4A SINE B4 -62 230 2 2 1218 264 241 0 0 chr6 83094183 83094241 -66422796 - MIRm SINE MIR -119 157 100 2 1218 479 258 0 0 chr6 83094425 83094518 -66422519 - B1F SINE Alu -56 93 1 2 1218 277 275 0 117 chr6 83094432 83094535 -66422502 - MT2B2 LTR ERVL -343 241 151 2 1218 498 220 215 18 chr6 83094540 83094698 -66422339 - ID_B1 SINE B4 0 224 36 2 1218 257 275 25 12 chr6 83094947 83095028 -66422009 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 2 1218 454 256 101 14 chr6 83095051 83095190 -66421847 - ID_B1 SINE B4 -4 220 70 2 1218 259 343 72 48 chr6 83095297 83095339 -66421698 - L1MC LINE L1 -2124 5758 5705 2 1218 837 230 67 6 chr6 83095339 83095518 -66421519 + B3A SINE B2 1 190 -8 2 1218 259 343 72 48 chr6 83095518 83095726 -66421311 - L1MC LINE L1 -2178 5704 5502 2 1218 252 0 0 0 chr6 83096148 83096176 -66420861 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 2 1218 524 162 75 9 chr6 83097046 83097152 -66419885 + B1F SINE Alu 1 113 -36 2 1218 258 258 97 61 chr6 83097048 83097213 -66419824 + MT2B LTR ERVL 167 337 -264 2 1218 192 152 0 0 chr6 83097781 83097814 -66419223 + CT-rich Low_complexity Low_complexity 1 33 0 2 1218 674 286 27 14 chr6 83098497 83098534 -66418503 + ID SINE ID 2 38 -186 2 1218 1189 41 7 7 chr6 83098534 83098681 -66418356 + B1_Mm SINE Alu 1 147 0 2 1218 674 286 27 14 chr6 83098681 83098863 -66418174 + ID_B1 SINE B4 39 223 -1 2 1218 667 283 192 0 chr6 83098866 83099106 -66417931 + B4A SINE B4 1 286 -6 2 1219 383 98 0 16 chr6 83101164 83101226 -66415811 + (TCTCC)n Simple_repeat Simple_repeat 4 64 0 2 1219 195 42 0 0 chr6 83103832 83103856 -66413181 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 2 1219 321 202 145 101 chr6 83105180 83105318 -66411719 - MIR SINE MIR -45 217 74 2 1219 567 0 0 0 chr6 83105867 83105930 -66411107 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1219 330 155 149 93 chr6 83106925 83107032 -66410005 - PB1D9 SINE Alu 0 120 8 2 1219 214 218 0 83 chr6 83106984 83107044 -66409993 - B4A SINE B4 -157 135 81 2 1219 486 196 2 2 chr6 83107041 83107146 -66409891 - B1_Mur1 SINE Alu -5 144 40 2 1219 943 209 23 0 chr6 83107190 83107362 -66409675 - B3 SINE B2 -9 207 32 2 1219 429 263 50 0 chr6 83107751 83107850 -66409187 - PB1D7 SINE Alu -16 104 1 2 1219 23 0 0 0 chr6 83107864 83107887 -66409150 + AT_rich Low_complexity Low_complexity 1 23 0 2 1219 1339 190 195 6 chr6 83107941 83108254 -66408783 - ORR1D1 LTR MaLR -2 372 1 2 1219 599 303 7 0 chr6 83108308 83108453 -66408584 - RSINE1 SINE B4 -17 148 3 2 1219 1354 91 0 6 chr6 83108457 83108634 -66408403 - B2_Mm2 SINE B2 -19 176 1 2 1219 278 312 39 0 chr6 83108719 83108796 -66408241 + MIRb SINE MIR 26 105 -163 2 1219 1010 234 71 64 chr6 83108938 83109483 -66407554 + Lx7 LINE L1 7084 7673 -23 2 1219 1019 149 17 11 chr6 83109514 83109691 -66407346 + B2_Mm2 SINE B2 1 178 -17 2 1219 567 0 0 0 chr6 83109691 83109754 -66407283 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1219 1233 61 0 0 chr6 83109781 83109929 -66407108 + B1_Mus1 SINE Alu 1 148 0 2 1219 329 200 67 0 chr6 83109930 83110005 -66407032 + B1F SINE Alu 68 147 -2 2 1219 944 177 0 0 chr6 83110015 83110162 -66406875 + B1_Mus2 SINE Alu 1 147 0 2 1219 258 315 48 126 chr6 83110162 83110173 -66406864 + B4 SINE B4 79 140 -152 2 1219 670 238 21 0 chr6 83110173 83110316 -66406721 + B1_Mur4 SINE Alu 5 150 0 2 1219 258 315 48 126 chr6 83110316 83110329 -66406708 + B4 SINE B4 141 232 -60 2 1219 500 261 66 15 chr6 83110427 83110563 -66406474 + B1F2 SINE Alu 7 149 0 2 1219 707 241 204 33 chr6 83113492 83113679 -66403358 + B4A SINE B4 2 217 -75 2 1219 324 0 0 0 chr6 83113679 83113715 -66403322 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2 1219 198 0 0 0 chr6 83113715 83113737 -66403300 + (GGA)n Simple_repeat Simple_repeat 2 23 0 2 1219 707 241 204 33 chr6 83113737 83113793 -66403244 + B4A SINE B4 218 286 -6 2 1219 291 262 165 0 chr6 83113893 83113996 -66403041 - ID_B1 SINE B4 0 224 105 2 1219 806 192 35 70 chr6 83114044 83114245 -66402792 + B3 SINE B2 12 205 -11 2 1219 330 132 0 0 chr6 83114494 83114547 -66402490 - B1_Mur3 SINE Alu -21 128 76 2 1219 240 146 0 0 chr6 83114548 83114589 -66402448 - B2_Mm2 SINE B2 -153 42 2 2 1219 536 287 0 0 chr6 83114597 83114719 -66402318 - B1_Mur1 SINE Alu -26 123 2 2 1219 22 0 0 0 chr6 83114735 83114757 -66402280 + AT_rich Low_complexity Low_complexity 1 22 0 2 1219 440 311 18 24 chr6 83114803 83114968 -66402069 - RSINE1 SINE B4 0 165 2 2 1219 244 213 90 76 chr6 83115078 83115206 -66401831 - MIRb SINE MIR -101 161 41 2 1219 290 235 2 0 chr6 83115276 83115343 -66401694 - B1F SINE Alu -26 94 27 2 1219 180 0 0 0 chr6 83115908 83115928 -66401109 + (CGGGG)n Simple_repeat Simple_repeat 5 24 0 2 1219 22 0 0 0 chr6 83115940 83115962 -66401075 + GC_rich Low_complexity Low_complexity 1 22 0 2 1219 21 57 0 0 chr6 83116096 83116131 -66400906 + GC_rich Low_complexity Low_complexity 1 35 0 2 1219 529 216 160 0 chr6 83116659 83116784 -66400253 - B3A SINE B2 -53 145 1 2 1219 396 138 0 0 chr6 83116906 83116971 -66400066 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1219 252 86 0 0 chr6 83117026 83117061 -66399976 + (CTTG)n Simple_repeat Simple_repeat 1 35 0 2 1219 219 143 0 0 chr6 83117218 83117253 -66399784 - MER5A DNA MER1_type -116 73 39 2 1219 180 320 25 51 chr6 83117312 83117391 -66399646 + MIR3 SINE MIR 108 184 -24 2 1219 273 326 42 0 chr6 83117538 83117633 -66399404 - ID_B1 SINE B4 -34 190 92 2 1219 742 111 95 0 chr6 83117727 83117853 -66399184 - B1_Mus1 SINE Alu 0 148 11 2 1219 728 199 13 20 chr6 83117859 83118008 -66399029 + B1_Mur3 SINE Alu 1 148 -1 2 1219 310 289 0 136 chr6 83117976 83118027 -66399010 + MT2B LTR ERVL 125 157 -444 2 1219 738 175 0 0 chr6 83118027 83118147 -66398890 + B1_Mur2 SINE Alu 3 122 -27 2 1219 563 283 36 0 chr6 83118177 83118315 -66398722 + B1F2 SINE Alu 1 143 -6 2 1219 260 53 26 0 chr6 83119559 83119597 -66397440 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1219 1036 46 243 0 chr6 83119626 83119778 -66397259 - B2_Mm2 SINE B2 -4 191 3 2 1219 229 307 39 29 chr6 83119916 83120020 -66397017 - PB1D7 SINE Alu -1 119 15 3 1219 231 238 48 48 chr6 83120004 83120088 -66396949 - B3A SINE B2 -113 85 2 3 1219 28 0 0 0 chr6 83120515 83120543 -66396494 + AT_rich Low_complexity Low_complexity 1 28 0 3 1219 432 252 93 9 chr6 83120570 83120678 -66396359 - RSINE1 SINE B4 -46 119 3 3 1219 220 220 186 0 chr6 83121913 83121972 -66395065 - B1F1 SINE Alu -12 137 68 3 1219 198 0 0 0 chr6 83122140 83122162 -66394875 + (TGG)n Simple_repeat Simple_repeat 3 24 0 3 1219 237 98 0 0 chr6 83122341 83122382 -66394655 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1219 336 24 0 0 chr6 83123833 83123874 -66393163 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1219 557 264 57 0 chr6 83123904 83124063 -66392974 - B4A SINE B4 -124 168 1 3 1219 394 279 0 19 chr6 83124236 83124342 -66392695 + PB1D10 SINE Alu 6 109 -8 3 1219 894 254 93 8 chr6 83124359 83124605 -66392432 + B4A SINE B4 8 274 -18 3 1219 22 0 0 0 chr6 83124624 83124646 -66392391 + AT_rich Low_complexity Low_complexity 1 22 0 3 1219 309 26 0 0 chr6 83125118 83125156 -66391881 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1219 270 0 0 0 chr6 83125156 83125186 -66391851 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 1219 264 333 11 22 chr6 83125204 83125293 -66391744 - RSINE1 SINE B4 0 165 78 3 1219 224 354 13 0 chr6 83125330 83125409 -66391628 - B4A SINE B4 -212 80 1 3 1219 516 289 50 25 chr6 83125467 83125507 -66391530 - B3 SINE B2 -12 204 165 3 1219 783 75 0 0 chr6 83125507 83125614 -66391423 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 1219 621 243 65 1 chr6 83125614 83125772 -66391265 - B3A SINE B2 -52 164 1 3 1219 185 404 7 21 chr6 83125999 83126143 -66390894 - MIRb SINE MIR -77 191 50 3 1219 195 146 0 0 chr6 83126219 83126260 -66390777 + (TCTCTG)n Simple_repeat Simple_repeat 1 41 0 3 1219 261 254 45 0 chr6 83126933 83127000 -66390037 - PB1D10 SINE Alu -29 88 19 3 1219 394 284 75 54 chr6 83127313 83127355 -66389682 - B3 SINE B2 0 216 175 3 1219 456 19 0 0 chr6 83127355 83127408 -66389629 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1219 903 115 8 7 chr6 83127408 83127551 -66389486 - B2_Mm2 SINE B2 -42 174 27 3 1219 459 223 60 52 chr6 83127547 83127728 -66389309 - B3A SINE B2 -4 191 2 3 1219 252 0 0 0 chr6 83127765 83127793 -66389244 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1219 564 277 41 76 chr6 83127794 83127966 -66389071 - B3A SINE B2 -32 166 1 3 1219 929 215 8 134 chr6 83127986 83128170 -66388867 - B3 SINE B2 0 216 62 3 1219 1228 49 0 0 chr6 83128170 83128312 -66388725 - B1_Mm SINE Alu -4 143 2 3 1219 929 215 8 134 chr6 83128312 83128374 -66388663 - B3 SINE B2 -155 61 1 3 1219 409 295 8 43 chr6 83131105 83131222 -66385815 + PB1D10 SINE Alu 5 117 0 3 1219 227 308 92 50 chr6 83131265 83131525 -66385512 - RMER17D2 LTR ERVK -379 430 160 3 1219 24 32 0 0 chr6 83131594 83131625 -66385412 + AT_rich Low_complexity Low_complexity 1 31 0 3 1219 1042 137 0 0 chr6 83131678 83131824 -66385213 + B1_Mus1 SINE Alu 2 147 -1 3 1219 553 233 37 8 chr6 83131863 83131997 -66385040 - B1F SINE Alu -2 147 10 3 1219 1210 97 51 11 chr6 83132005 83132021 -66385016 - B2_Mm1a SINE B2 -9 184 161 3 1219 234 0 0 0 chr6 83132021 83132047 -66384990 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3 1219 1210 97 51 11 chr6 83132047 83132207 -66384830 - B2_Mm1a SINE B2 -33 160 1 3 1219 537 257 21 21 chr6 83132214 83132357 -66384680 - B1F SINE Alu -6 143 1 3 1219 456 35 0 0 chr6 83132801 83132859 -66384178 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1219 731 226 20 0 chr6 83134498 83134644 -66382393 - B1F SINE Alu 0 149 1 3 1219 876 194 39 24 chr6 83135305 83135511 -66381526 - B3 SINE B2 -2 214 6 3 1219 665 161 280 0 chr6 83137948 83138116 -66378921 - B3 SINE B2 0 216 2 3 1219 240 258 16 0 chr6 83138967 83139029 -66378008 + CT-rich Low_complexity Low_complexity 1 63 0 3 1219 689 225 22 0 chr6 83143087 83143225 -66373812 - ID_B1 SINE B4 0 224 84 3 1219 399 324 0 9 chr6 83143265 83143377 -66373660 - RSINE1 SINE B4 0 165 55 3 1219 483 270 0 18 chr6 83143411 83143524 -66373513 - PB1D10 SINE Alu -4 113 3 3 1219 983 182 6 0 chr6 83145114 83145279 -66371758 + B3 SINE B2 2 167 -49 3 1219 186 43 0 0 chr6 83145279 83145302 -66371735 + (CATA)n Simple_repeat Simple_repeat 4 26 0 3 1219 235 130 55 18 chr6 83148050 83148105 -66368932 + CT-rich Low_complexity Low_complexity 2 58 0 3 1219 782 139 77 42 chr6 83148172 83148315 -66368722 - B1_Mur3 SINE Alu 0 149 2 3 1219 418 246 17 34 chr6 83148322 83148334 -66368703 - PB1D10 SINE Alu -1 116 107 3 1219 189 0 0 0 chr6 83148334 83148355 -66368682 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1219 418 246 17 34 chr6 83148355 83148460 -66368577 - PB1D10 SINE Alu -11 106 1 3 1219 262 317 0 47 chr6 83150985 83151071 -66365966 - ID4_ SINE ID 0 83 2 3 1219 828 184 0 0 chr6 83151251 83151387 -66365650 + B1_Mur1 SINE Alu 10 145 -4 3 1219 192 40 0 0 chr6 83151504 83151529 -66365508 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1219 504 0 0 0 chr6 83151529 83151584 -66365453 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1219 216 86 0 0 chr6 83152146 83152181 -66364856 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 3 1219 625 115 10 0 chr6 83153867 83153963 -66363074 - B1_Mur1 SINE Alu 0 149 53 3 1219 481 218 125 18 chr6 83154508 83154620 -66362417 - ID_B1 SINE B4 -7 217 94 3 1219 291 322 70 83 chr6 83154620 83154661 -66362376 + YREP_Mm Unknown Unknown 184 334 -1478 3 1219 810 21 0 0 chr6 83154684 83154780 -66362257 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 1219 588 219 85 15 chr6 83154780 83154903 -66362134 - B1_Mur1 SINE Alu -14 135 2 3 1219 224 298 131 0 chr6 83154947 83155031 -66362006 - RSINE1 SINE B4 -30 135 41 3 1219 434 280 0 0 chr6 83155039 83155139 -66361898 - PB1D10 SINE Alu -17 100 1 3 1219 23 0 0 0 chr6 83155149 83155172 -66361865 + AT_rich Low_complexity Low_complexity 1 23 0 3 1219 260 308 67 0 chr6 83155374 83155478 -66361559 + RMER15 LTR ERVL 407 517 -58 3 1219 947 179 49 0 chr6 83155524 83155708 -66361329 - B3 SINE B2 -21 195 3 3 1219 331 253 30 50 chr6 83156590 83156690 -66360347 + MER2 DNA MER2_type 125 222 -123 3 1219 270 0 0 0 chr6 83156692 83156722 -66360315 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1219 484 259 0 44 chr6 83156770 83156883 -66360154 - ID_B1 SINE B4 -24 200 93 3 1219 279 54 0 0 chr6 83156898 83156935 -66360102 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1219 267 263 13 26 chr6 83157226 83157304 -66359733 + PB1D10 SINE Alu 33 109 -8 3 1219 738 109 46 15 chr6 83158283 83158413 -66358624 - URR1B DNA MER1_type 0 225 92 3 1219 410 314 35 21 chr6 83159104 83159247 -66357790 - RSINE1 SINE B4 -7 158 14 3 1219 270 56 0 0 chr6 83159405 83159441 -66357596 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1219 249 194 176 27 chr6 83159465 83159539 -66357498 - ID SINE ID -139 85 1 3 1219 897 126 0 0 chr6 83159670 83159813 -66357224 - ORR1A4 LTR MaLR -186 143 1 3 1219 251 365 0 12 chr6 83159813 83159890 -66357147 + RSINE1 SINE B4 83 158 -7 3 1219 270 206 16 16 chr6 83159979 83160043 -66356994 - ID4 SINE ID -4 79 16 3 1219 232 182 54 18 chr6 83160589 83160645 -66356392 - L5 LINE RTE -1 2264 2207 3 1219 1398 67 33 6 chr6 83161097 83161278 -66355759 + B2_Mm2 SINE B2 1 186 -9 3 1219 468 91 0 0 chr6 83162131 83162197 -66354840 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1219 302 321 0 23 chr6 83162200 83162286 -66354751 - B4 SINE B4 0 292 209 3 1219 2214 171 123 23 chr6 83162422 83162901 -66354136 - RLTR11A2 LTR ERVK 0 527 1 3 1219 1334 152 9 23 chr6 83162957 83163172 -66353865 + B3 SINE B2 1 212 -4 3 1219 827 200 18 97 chr6 83164102 83164159 -66352878 - ORR1D1 LTR MaLR -168 210 164 3 1219 339 25 0 0 chr6 83164159 83164199 -66352838 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1219 477 0 0 0 chr6 83164199 83164251 -66352786 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1219 961 123 13 16 chr6 83164251 83164419 -66352618 - ORR1D1 LTR MaLR -215 163 2 3 1219 1240 186 5 9 chr6 83164419 83164631 -66352406 - ID_B1 SINE B4 -13 211 1 3 1219 450 0 0 0 chr6 83164725 83164775 -66352262 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1219 324 0 0 0 chr6 83164775 83164810 -66352227 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1219 401 309 10 0 chr6 83164832 83164929 -66352108 - B1_Mur2 SINE Alu -51 98 1 3 1219 288 256 11 85 chr6 83169154 83169248 -66347789 + MIR3 SINE MIR 107 193 -15 3 1219 643 275 0 0 chr6 83169281 83169419 -66347618 + RSINE1 SINE B4 4 141 -24 3 1219 534 31 0 0 chr6 83169419 83169483 -66347554 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1219 552 270 44 59 chr6 83170486 83170709 -66346328 - ID_B1 SINE B4 -21 271 68 3 1219 182 250 9 28 chr6 83171722 83171829 -66345208 + CT-rich Low_complexity Low_complexity 4 108 0 3 1219 201 297 115 29 chr6 83171840 83171944 -66345093 + MIRc SINE MIR 31 143 -125 3 1219 243 0 0 0 chr6 83171944 83171971 -66345066 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1219 375 23 0 0 chr6 83172120 83172164 -66344873 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1219 493 229 31 39 chr6 83172173 83172300 -66344737 - RSINE1 SINE B4 -36 129 4 3 1219 250 239 0 0 chr6 83172624 83172670 -66344367 + MamRep38 DNA hAT 6 51 -244 3 1219 668 266 56 79 chr6 83172672 83172888 -66344149 - B4 SINE B4 -17 275 65 3 1219 276 54 0 0 chr6 83172888 83172925 -66344112 + B2_Mm2 SINE B2 1 37 -158 4 1219 718 190 42 0 chr6 83172990 83173132 -66343905 - B1_Mur1 SINE Alu -1 148 1 4 1219 745 231 14 0 chr6 83173194 83173337 -66343700 + B1_Mur1 SINE Alu 3 147 -2 4 1219 206 237 204 0 chr6 83173498 83173591 -66343446 + MIR SINE MIR 40 151 -111 4 1219 231 275 0 42 chr6 83173592 83173664 -66343373 + ID2 SINE ID 3 71 -12 4 1219 22 56 0 0 chr6 83173756 83173792 -66343245 + AT_rich Low_complexity Low_complexity 1 36 0 4 1219 733 271 43 92 chr6 83173792 83174043 -66342994 - B4 SINE B4 -5 287 65 4 1219 973 49 247 20 chr6 83174046 83174192 -66342845 + B2_Mm2 SINE B2 4 182 -13 4 1219 1306 96 11 0 chr6 83174207 83174384 -66342653 + B2_Mm1t SINE B2 1 179 -14 4 1219 351 73 351 18 chr6 83174416 83174527 -66342510 + B2_Mm2 SINE B2 47 194 -1 4 1219 271 172 172 0 chr6 83174553 83174611 -66342426 - B4 SINE B4 -220 72 5 4 1219 272 173 0 37 chr6 83174936 83174990 -66342047 - RMER30 DNA MER1_type -47 155 104 4 1219 639 323 34 64 chr6 83174991 83175289 -66341748 + B4A SINE B4 2 290 -2 4 1219 434 236 0 78 chr6 83175325 83175440 -66341597 - RMER30 DNA MER1_type -88 114 9 4 1219 655 256 38 75 chr6 83175711 83175897 -66341140 - B3A SINE B2 -25 191 13 4 1219 234 308 21 21 chr6 83175895 83175988 -66341049 + Tigger5 DNA MER2_type 33 125 -2281 4 1219 328 246 120 26 chr6 83176549 83176666 -66340371 + B4A SINE B4 2 129 -163 4 1219 630 243 1 48 chr6 83176891 83177039 -66339998 - RSINE1 SINE B4 -21 144 3 4 1219 227 259 48 36 chr6 83177280 83177364 -66339673 - MIRb SINE MIR -67 201 117 4 1219 242 143 0 0 chr6 83177719 83177754 -66339283 - RLTR20B3 LTR ERVK 0 563 529 4 1219 720 64 0 0 chr6 83177760 83177854 -66339183 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 1219 1358 230 118 19 chr6 83177861 83178278 -66338759 - RLTR20B3 LTR ERVK -115 462 5 4 1219 954 106 79 7 chr6 83178813 83178965 -66338072 + B2_Mm1t SINE B2 2 164 -29 4 1219 351 118 28 12 chr6 83178980 83179087 -66337950 + B2_Mm2 SINE B2 47 191 -4 4 1219 810 223 14 0 chr6 83179089 83179237 -66337800 + B3 SINE B2 1 150 -66 4 1219 495 0 0 0 chr6 83179243 83179298 -66337739 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1219 909 165 108 31 chr6 83179428 83179622 -66337415 - ID_B1 SINE B4 -14 210 2 4 1219 2057 152 75 29 chr6 83179746 83180132 -66336905 - MTC LTR MaLR -1 420 17 4 1219 623 248 80 2 chr6 83180087 83180280 -66336757 - B3A SINE B2 0 216 1 4 1219 550 134 0 0 chr6 83180280 83180362 -66336675 - MTC LTR MaLR -339 82 1 4 1219 609 210 25 118 chr6 83180364 83180560 -66336477 - B3A SINE B2 -3 192 1 4 1219 233 300 132 79 chr6 83180560 83180693 -66336344 + RMER21B LTR ERV1 517 657 -185 4 1219 849 227 77 10 chr6 83180741 83180937 -66336100 + B3 SINE B2 3 211 -5 4 1219 600 103 0 0 chr6 83182000 83182107 -66334930 + (CA)n Simple_repeat Simple_repeat 1 107 0 4 1219 703 229 61 71 chr6 83182325 83182522 -66334515 - B3A SINE B2 0 198 4 4 1219 422 135 96 7 chr6 83182766 83182853 -66334184 - B1F SINE Alu -10 110 20 4 1219 767 274 24 29 chr6 83182905 83183112 -66333925 - B3 SINE B2 0 216 11 4 1219 333 68 0 0 chr6 83183178 83183222 -66333815 + (TCC)n Simple_repeat Simple_repeat 2 45 0 4 1219 1194 75 7 0 chr6 83183235 83183381 -66333656 - B1_Mm SINE Alu 0 147 1 4 1219 614 49 12 0 chr6 83183635 83183717 -66333320 + (GA)n Simple_repeat Simple_repeat 1 83 0 4 1219 193 127 18 35 chr6 83184672 83184729 -66332308 + (CTGGGG)n Simple_repeat Simple_repeat 6 61 0 4 1219 192 152 0 0 chr6 83184838 83184871 -66332166 + CT-rich Low_complexity Low_complexity 1 33 0 4 1219 313 360 60 20 chr6 83184871 83185021 -66332016 - HAL1-3A_ME LINE L1 -419 2439 2284 4 1219 623 109 0 19 chr6 83185021 83185124 -66331913 + (TTTCC)n Simple_repeat Simple_repeat 4 104 0 4 1219 698 271 0 0 chr6 83185124 83185268 -66331769 - ID_B1 SINE B4 0 224 81 4 1219 403 374 10 10 chr6 83185630 83185830 -66331207 - MIRb SINE MIR -47 221 22 4 1219 324 127 0 0 chr6 83185845 83185900 -66331137 + (T)n Simple_repeat Simple_repeat 1 55 0 4 1219 1042 60 0 0 chr6 83185902 83186035 -66331002 - B1_Mus1 SINE Alu 0 148 16 4 1219 434 234 83 76 chr6 83185905 83186062 -66330975 - B4A SINE B4 -68 224 67 4 1219 348 289 85 8 chr6 83186285 83186354 -66330683 + B1F1 SINE Alu 1 79 -70 4 1219 232 246 57 14 chr6 83186354 83186424 -66330613 + ID4_ SINE ID 1 73 -10 4 1219 232 299 68 93 chr6 83186424 83186472 -66330565 + ID_B1 SINE B4 1 115 -109 4 1219 312 237 26 13 chr6 83188129 83188206 -66328831 + ID4_ SINE ID 2 79 -4 4 1219 723 206 0 22 chr6 83188371 83188510 -66328527 - B1_Mur2 SINE Alu -1 148 13 4 1219 750 53 0 0 chr6 83189798 83189893 -66327144 + (TCTCC)n Simple_repeat Simple_repeat 2 96 0 4 1219 744 307 50 39 chr6 83190936 83191217 -66325820 + B4 SINE B4 9 292 0 4 1219 417 39 0 0 chr6 83191226 83191277 -66325760 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1219 891 290 45 25 chr6 83191515 83191801 -66325236 + B4A SINE B4 1 292 0 4 1219 232 328 133 30 chr6 83191678 83191948 -66325089 - RMER12 LTR ERVK -254 1068 771 4 1219 1035 129 14 0 chr6 83192307 83192454 -66324583 - B1_Mur4 SINE Alu 0 150 2 4 1219 396 0 0 0 chr6 83192537 83192581 -66324456 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1219 658 285 57 76 chr6 83192588 83192850 -66324187 - B4A SINE B4 -30 262 6 4 1219 684 251 133 5 chr6 83192890 83193078 -66323959 + ID_B1 SINE B4 3 214 -10 4 1219 180 0 0 0 chr6 83193078 83193098 -66323939 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1219 1110 108 48 0 chr6 83193158 83193325 -66323712 - URR1A DNA MER1_type -1 225 51 4 1219 604 249 81 27 chr6 83193325 83193381 -66323656 + CYRA11_Mm Unknown Y-chromosome 172 406 -211 4 1219 192 346 86 25 chr6 83193633 83193825 -66323212 - MIRb SINE MIR -43 225 25 4 1219 476 214 148 26 chr6 83194238 83194353 -66322684 + B1_Mur1 SINE Alu 21 149 0 4 1219 281 231 15 51 chr6 83194353 83194490 -66322547 + A-rich Low_complexity Low_complexity 6 137 0 4 1219 595 225 242 22 chr6 83195505 83195687 -66321350 - ID_B1 SINE B4 -2 222 1 4 1219 526 224 94 8 chr6 83196615 83196732 -66320305 - ID_B1 SINE B4 -7 217 91 4 1219 834 252 63 5 chr6 83196795 83197002 -66320035 - B4A SINE B4 0 292 74 4 1219 193 314 37 19 chr6 83197201 83197308 -66319729 - L2 LINE L2 -1606 1813 1705 4 1219 237 163 0 0 chr6 83197438 83197487 -66319550 + T-rich Low_complexity Low_complexity 1 49 0 4 1219 1219 68 0 0 chr6 83197546 83197693 -66319344 - B1_Mus1 SINE Alu 0 148 2 4 1219 570 208 0 0 chr6 83197932 83198076 -66318961 + (TG)n Simple_repeat Simple_repeat 1 144 0 4 1219 356 212 0 12 chr6 83198077 83198158 -66318879 - B4 SINE B4 -1 291 212 4 1219 234 244 0 0 chr6 83198261 83198306 -66318731 - RSINE1 SINE B4 -119 46 2 4 1219 224 194 0 0 chr6 83198661 83198697 -66318340 + polypyrimidine Low_complexity Low_complexity 3 38 0 4 1219 324 360 57 57 chr6 83198767 83198979 -66318058 + B4 SINE B4 63 274 -18 4 1219 904 260 8 73 chr6 83198951 83198988 -66318049 - B3 SINE B2 -9 186 151 4 1219 438 20 0 0 chr6 83198988 83199039 -66317998 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1219 904 242 5 11 chr6 83199039 83199208 -66317829 - B3 SINE B2 -46 170 2 4 1219 457 333 127 54 chr6 83199988 83200414 -66316623 + MamRep605 Unknown Unknown 264 720 -156 4 1219 26 30 0 0 chr6 83200636 83200669 -66316368 + AT_rich Low_complexity Low_complexity 1 33 0 4 1219 375 105 0 0 chr6 83200679 83200736 -66316301 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1219 404 270 136 80 chr6 83200744 83200869 -66316168 - RSINE1 SINE B4 -33 132 1 4 1219 423 196 64 21 chr6 83200963 83201057 -66315980 - B3 SINE B2 0 216 119 4 1219 921 237 23 14 chr6 83201124 83201338 -66315699 + B3 SINE B2 1 216 0 4 1219 617 299 6 47 chr6 83201380 83201552 -66315485 + RSINE1 SINE B4 1 165 0 4 1219 290 263 45 119 chr6 83201711 83201784 -66315253 + B1F SINE Alu 5 113 -36 4 1219 297 226 0 0 chr6 83201784 83201837 -66315200 + ID_B1 SINE B4 146 198 -26 4 1219 252 0 0 0 chr6 83201847 83201875 -66315162 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4 1219 899 259 0 48 chr6 83201923 83202130 -66314907 - B3A SINE B2 -1 197 1 4 1219 1368 55 60 5 chr6 83202141 83202325 -66314712 - B2_Mm2 SINE B2 0 195 2 4 1219 887 251 24 15 chr6 83202351 83202557 -66314480 - B3 SINE B2 -8 208 1 4 1219 21 0 0 0 chr6 83202572 83202593 -66314444 + AT_rich Low_complexity Low_complexity 1 21 0 4 1219 459 306 8 0 chr6 83202680 83202801 -66314236 + ID_B1 SINE B4 90 211 -13 4 1219 2417 145 29 22 chr6 83202802 83202850 -66314187 - MTC LTR MaLR -10 411 367 4 1219 1155 62 0 33 chr6 83202850 83202992 -66314045 + B1_Mm SINE Alu 1 138 -9 4 1219 297 0 0 0 chr6 83202992 83203025 -66314012 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 4 1219 2417 145 29 22 chr6 83203032 83203391 -66313646 - MTC LTR MaLR -55 366 1 4 1219 212 286 0 0 chr6 83203432 83203481 -66313556 + ID SINE ID 7 55 -169 4 1219 591 212 17 0 chr6 83203487 83203605 -66313432 - B3 SINE B2 -94 122 3 4 1219 316 196 0 18 chr6 83203696 83203753 -66313284 - ID_B1 SINE B4 -26 198 143 4 1219 572 247 64 45 chr6 83203773 83203930 -66313107 - RSINE1 SINE B4 -2 163 4 5 1219 733 111 0 18 chr6 83204002 83204112 -66312925 - B1_Mur1 SINE Alu 0 149 42 5 1219 223 0 0 155 chr6 83204115 83204218 -66312819 + (CCCTG)n Simple_repeat Simple_repeat 4 90 0 5 1219 363 256 72 101 chr6 83204218 83204357 -66312680 - B4 SINE B4 -152 140 6 5 1219 360 338 64 50 chr6 83204898 83205116 -66311921 - L1MC5 LINE L1 -50 7911 7691 5 1219 316 248 43 94 chr6 83205116 83205254 -66311783 - B2_Mm1t SINE B2 -8 185 55 5 1219 552 100 0 0 chr6 83205272 83205352 -66311685 + (TTTC)n Simple_repeat Simple_repeat 1 80 0 5 1219 386 179 211 0 chr6 83205352 83205447 -66311590 - BC1_Mm scRNA scRNA -37 115 1 5 1219 705 242 87 0 chr6 83205544 83205693 -66311344 + B3 SINE B2 23 184 -32 5 1219 465 19 0 0 chr6 83205693 83205747 -66311290 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1219 320 316 26 0 chr6 83205823 83205899 -66311138 + PB1D10 SINE Alu 1 78 -39 5 1219 536 176 12 0 chr6 83205903 83205988 -66311049 + RSINE1 SINE B4 11 96 -69 5 1219 980 291 37 7 chr6 83206586 83206859 -66310178 - B4A SINE B4 -4 288 8 5 1219 7758 64 49 6 chr6 83206979 83208795 -66308242 + L1VL2 LINE L1 120 2029 -1586 5 1219 1549 254 26 121 chr6 83208889 83209088 -66307949 - L1_Rod LINE L1 -1222 4625 4445 5 1219 1248 54 0 0 chr6 83209088 83209235 -66307802 - B1_Mm SINE Alu 0 147 1 5 1219 1549 254 26 121 chr6 83209235 83209542 -66307495 - L1_Rod LINE L1 -1403 4444 4166 5 1219 1131 71 7 0 chr6 83209542 83209682 -66307355 + B1_Mus1 SINE Alu 1 141 -7 5 1219 453 19 0 0 chr6 83209687 83209741 -66307296 + (TAA)n Simple_repeat Simple_repeat 2 55 0 5 1219 1549 254 26 121 chr6 83209741 83210142 -66306895 - L1_Rod LINE L1 -1685 4162 3799 5 1219 1150 128 36 31 chr6 83210161 83210355 -66306682 - RMER15 LTR ERVL -380 195 1 5 1219 332 169 0 0 chr6 83212239 83212298 -66304739 - B3 SINE B2 -157 59 1 5 1219 407 315 62 52 chr6 83212919 83213035 -66304002 + ID_B1 SINE B4 1 213 -11 5 1219 506 122 42 53 chr6 83213035 83213130 -66303907 + B1F SINE Alu 45 138 -11 5 1219 1097 65 0 21 chr6 83214487 83214628 -66302409 + B1_Mus1 SINE Alu 2 139 -9 5 1219 370 240 140 0 chr6 83214652 83214752 -66302285 + PB1D9 SINE Alu 1 114 -6 5 1219 381 303 142 84 chr6 83214882 83215037 -66302000 + RSINE1 SINE B4 2 165 0 5 1219 498 255 39 46 chr6 83215061 83215216 -66301821 + ID_B1 SINE B4 74 223 -1 5 1219 638 87 0 10 chr6 83215218 83215322 -66301715 + (TAA)n Simple_repeat Simple_repeat 2 104 0 5 1219 780 262 21 36 chr6 83215328 83215522 -66301515 + B3A SINE B2 7 197 -1 5 1219 209 336 97 35 chr6 83215839 83215984 -66301053 - L2b LINE L2 -3 3372 3219 5 1219 531 312 88 29 chr6 83217747 83218021 -66299016 - B4A SINE B4 -2 290 1 5 1219 243 0 0 0 chr6 83218030 83218057 -66298980 + (C)n Simple_repeat Simple_repeat 1 27 0 5 1219 210 274 12 12 chr6 83218236 83218321 -66298716 + (CGG)n Simple_repeat Simple_repeat 2 86 0 5 1219 487 238 0 29 chr6 83218729 83218843 -66298194 + PB1D7 SINE Alu 1 110 -10 5 1219 277 343 84 109 chr6 83218924 83219121 -66297916 - MLT1C LTR MaLR -185 282 87 5 1219 647 263 140 0 chr6 83219121 83219300 -66297737 - ID_B1 SINE B4 -19 205 2 5 1219 277 343 84 109 chr6 83219300 83219377 -66297660 - MLT1C LTR MaLR -381 86 15 5 1219 566 256 118 54 chr6 83219566 83219752 -66297285 - MTE2b LTR MaLR -10 369 172 5 1219 639 0 0 0 chr6 83219754 83219825 -66297212 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1219 1016 67 8 0 chr6 83219825 83219959 -66297078 - B1_Mus1 SINE Alu -8 140 6 5 1219 3477 58 18 2 chr6 83219971 83220406 -66296631 - L1_Mus1 LINE L1 -1 6566 6125 5 1219 846 263 5 5 chr6 83220430 83220625 -66296412 - MTE2b LTR MaLR -184 195 1 5 1219 1360 23 107 28 chr6 83221394 83221572 -66295465 - B2_Mm1a SINE B2 0 193 2 5 1219 266 238 21 106 chr6 83221575 83221669 -66295368 - B3 SINE B2 0 216 131 5 1219 943 156 326 8 chr6 83221660 83221899 -66295138 - RMER15 LTR ERVL -234 341 27 5 1219 312 228 0 0 chr6 83221932 83221989 -66295048 - RMER15 LTR ERVL -515 60 4 5 1219 572 281 27 20 chr6 83222640 83222789 -66294248 + B4 SINE B4 2 151 -141 5 1219 221 299 98 54 chr6 83222733 83222825 -66294212 + B1_Mus1 SINE Alu 12 107 -41 5 1219 477 76 0 0 chr6 83222835 83222901 -66294136 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1219 1232 41 0 20 chr6 83224099 83224249 -66292788 + B1_Mus2 SINE Alu 1 147 0 5 1219 196 28 26 53 chr6 83224254 83224292 -66292745 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1219 180 176 0 0 chr6 83224701 83224735 -66292302 + (ATGGTG)n Simple_repeat Simple_repeat 5 38 0 5 1219 721 245 14 0 chr6 83224735 83224874 -66292163 + B1_Mur2 SINE Alu 2 142 -7 5 1219 847 156 7 7 chr6 83224886 83225022 -66292015 + B1_Mus2 SINE Alu 3 138 -9 5 1219 194 0 39 0 chr6 83225022 83225048 -66291989 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1219 512 290 21 59 chr6 83225650 83225837 -66291200 + MER5A DNA MER1_type 4 183 -6 5 1219 279 0 0 0 chr6 83226778 83226809 -66290228 + (GGA)n Simple_repeat Simple_repeat 1 31 0 5 1219 275 250 222 34 chr6 83227039 83227227 -66289810 + MIRc SINE MIR 25 245 -23 5 1219 1340 90 21 0 chr6 83228218 83228406 -66288631 - B2_Mm1t SINE B2 0 193 2 5 1219 1377 237 24 76 chr6 83228516 83228886 -66288151 - MTE2a LTR MaLR -25 354 4 5 1219 677 236 82 29 chr6 83229000 83229170 -66287867 + B3A SINE B2 2 180 -18 5 1219 626 299 78 16 chr6 83229269 83229524 -66287513 - MER2 DNA MER2_type 0 345 75 5 1219 507 287 0 0 chr6 83230219 83230327 -66286710 + RSINE1 SINE B4 7 114 -51 5 1219 375 23 0 0 chr6 83230335 83230379 -66286658 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1219 349 217 0 0 chr6 83230529 83230598 -66286439 + ID_B1 SINE B4 93 161 -63 5 1219 342 281 1 0 chr6 83230598 83230609 -66286428 + PB1D10 SINE Alu 40 92 -55 5 152 618 269 83 57 chr6 83230617 83230810 -66286227 + B3A SINE B2 1 198 0 5 1220 240 229 0 40 chr6 83230833 83230883 -66286154 + ID4_ SINE ID 25 72 -11 5 1220 717 12 0 0 chr6 83231026 83231108 -66285929 + (TTC)n Simple_repeat Simple_repeat 3 84 0 5 1220 1620 0 0 0 chr6 83231108 83231351 -66285686 + (TCTCCC)n Simple_repeat Simple_repeat 1 243 0 5 1220 1039 39 8 0 chr6 83231360 83231487 -66285550 - B1_Mus1 SINE Alu 0 148 21 5 1220 562 220 34 34 chr6 83231487 83231506 -66285531 - ID_B1 SINE B4 -1 223 78 5 1220 309 282 155 0 chr6 83231703 83231806 -66285231 - RSINE1 SINE B4 -6 159 41 5 1220 944 234 39 24 chr6 83231865 83232071 -66284966 - B3 SINE B2 -5 211 3 5 1220 232 357 51 40 chr6 83232162 83232436 -66284601 - L1M5 LINE L1 -1079 5067 4791 5 1220 663 231 95 0 chr6 83232576 83232723 -66284314 + RSINE1 SINE B4 2 162 -3 5 1220 194 33 0 62 chr6 83232724 83232738 -66284299 + (TTCC)n Simple_repeat Simple_repeat 4 16 0 5 1220 243 0 0 0 chr6 83232738 83232765 -66284272 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 1220 194 33 0 62 chr6 83232765 83232782 -66284255 + (TTCC)n Simple_repeat Simple_repeat 3 19 0 5 1220 207 0 0 0 chr6 83233074 83233097 -66283940 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1220 264 263 0 17 chr6 83233130 83233188 -66283849 - PB1D7 SINE Alu -40 80 24 5 1220 1181 196 15 0 chr6 83233236 83233440 -66283597 + B3 SINE B2 5 211 -5 5 1220 237 296 34 34 chr6 83233464 83233642 -66283395 + L1ME3B LINE L1 5791 5968 -272 5 1220 237 65 0 0 chr6 83233732 83233763 -66283274 + (CCCCCT)n Simple_repeat Simple_repeat 2 32 0 5 1220 712 159 79 0 chr6 83233763 83233889 -66283148 - B1_Mur3 SINE Alu -11 138 3 5 1220 668 225 8 0 chr6 83234111 83234231 -66282806 + B1_Mur2 SINE Alu 3 123 -26 5 1220 323 96 19 0 chr6 83234261 83234313 -66282724 + (TATG)n Simple_repeat Simple_repeat 4 56 0 5 1220 550 217 144 83 chr6 83234317 83234427 -66282610 + B3A SINE B2 4 137 -61 5 1220 414 0 0 0 chr6 83234427 83234473 -66282564 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1220 550 217 144 83 chr6 83234473 83234543 -66282494 + B3A SINE B2 138 194 -4 5 1220 347 265 141 32 chr6 83235601 83235757 -66281280 - MIRb SINE MIR -93 175 3 5 1220 770 204 0 28 chr6 83236396 83236537 -66280500 + B1_Mur2 SINE Alu 2 138 -11 5 1220 908 173 6 0 chr6 83236538 83236717 -66280320 + GA-rich Low_complexity Low_complexity 1 180 0 5 1220 323 258 173 4 chr6 83236860 83236970 -66280067 + MER5A DNA MER1_type 42 181 -8 5 1220 717 206 38 0 chr6 83236996 83237127 -66279910 + RSINE1 SINE B4 2 137 -28 5 1220 644 77 0 42 chr6 83237124 83237219 -66279818 - B1_Mus2 SINE Alu -15 132 42 5 1220 262 191 67 93 chr6 83237152 83237227 -66279810 - RLTR25B LTR ERVK -519 509 437 5 1220 329 190 0 0 chr6 83237292 83237350 -66279687 - PB1D9 SINE Alu -62 58 1 5 1220 299 0 73 0 chr6 83237366 83237407 -66279630 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 5 1220 623 285 69 20 chr6 83237555 83237802 -66279235 + B4A SINE B4 9 267 -25 5 1220 438 69 0 0 chr6 83237819 83237877 -66279160 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1220 471 63 0 0 chr6 83239527 83239590 -66277447 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1220 967 124 220 0 chr6 83239590 83239767 -66277270 - URR1A DNA MER1_type -2 224 9 5 1220 231 36 0 0 chr6 83239774 83239802 -66277235 + (C)n Simple_repeat Simple_repeat 1 28 0 5 1220 184 258 44 29 chr6 83240474 83240542 -66276495 - MIRb SINE MIR -187 81 13 5 1220 300 202 279 0 chr6 83241439 83241518 -66275519 - B3A SINE B2 -88 110 10 6 1220 832 278 43 21 chr6 83241515 83241750 -66275287 - B4A SINE B4 -51 241 2 6 1220 343 351 0 69 chr6 83242067 83242226 -66274811 + RSINE1 SINE B4 4 151 -14 6 1220 613 191 127 0 chr6 83242288 83242398 -66274639 + B3 SINE B2 4 127 -89 6 1220 571 277 8 0 chr6 83242401 83242531 -66274506 - RSINE1 SINE B4 -33 132 2 6 1220 719 216 40 50 chr6 83243161 83243361 -66273676 + B3A SINE B2 1 198 0 6 1220 1190 58 0 0 chr6 83243388 83243526 -66273511 + B1_Mus1 SINE Alu 1 138 -10 6 1220 216 0 0 0 chr6 83243526 83243550 -66273487 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1220 664 176 128 15 chr6 83243974 83244107 -66272930 - B1_Mur1 SINE Alu 0 149 2 6 1220 507 207 179 52 chr6 83244133 83244306 -66272731 - B3A SINE B2 0 198 4 6 1220 566 285 0 14 chr6 83244321 83244460 -66272577 - B1F2 SINE Alu 0 149 13 6 1220 288 0 0 0 chr6 83244681 83244713 -66272324 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6 1220 1141 96 0 13 chr6 83244714 83244872 -66272165 - B2_Mm2 SINE B2 -37 158 3 6 1220 512 239 115 126 chr6 83244952 83245143 -66271894 - B3A SINE B2 0 198 3 6 1220 250 264 214 22 chr6 83246079 83246168 -66270869 - MIRb SINE MIR -44 224 119 6 1220 180 267 70 122 chr6 83247499 83247614 -66269423 - MIRm SINE MIR -154 122 14 6 1220 804 246 41 62 chr6 83248242 83248437 -66268600 + ID_B1 SINE B4 1 191 -33 6 1220 246 143 0 0 chr6 83248439 83248488 -66268549 + (GGGA)n Simple_repeat Simple_repeat 3 51 0 6 1220 650 248 43 104 chr6 83248508 83248738 -66268299 - B3A SINE B2 0 216 1 6 1220 729 214 187 0 chr6 83248758 83248940 -66268097 - B3 SINE B2 0 216 1 6 1220 185 337 36 12 chr6 83249569 83249653 -66267384 - MIRm SINE MIR -98 178 93 6 1220 379 255 41 0 chr6 83250560 83250658 -66266379 - Lx8 LINE L1 -174 7299 7198 6 1220 828 255 61 19 chr6 83251127 83251339 -66265698 + ID_B1 SINE B4 1 221 -3 6 1220 553 241 101 6 chr6 83251480 83251639 -66265398 - B3A SINE B2 -18 180 7 6 1220 793 238 21 27 chr6 83252006 83252192 -66264845 + B3 SINE B2 2 186 -30 6 1220 366 253 115 0 chr6 83252629 83252716 -66264321 + ID_B1 SINE B4 121 217 -7 6 1220 254 316 0 106 chr6 83252785 83252870 -66264167 + MT2B LTR ERVL 165 240 -361 6 1220 534 248 9 9 chr6 83252794 83252904 -66264133 + PB1D9 SINE Alu 10 119 -1 6 1220 384 177 48 48 chr6 83253025 83253108 -66263929 - PB1D9 SINE Alu -6 114 32 6 1220 280 109 109 0 chr6 83253143 83253189 -66263848 + B3 SINE B2 153 203 -13 6 1220 445 184 244 9 chr6 83254049 83254164 -66262873 - B1_Mur2 SINE Alu -7 142 1 6 1220 756 136 52 29 chr6 83255007 83255143 -66261894 + B3 SINE B2 1 139 -77 6 1220 237 65 0 0 chr6 83255143 83255174 -66261863 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1220 703 219 118 52 chr6 83255174 83255212 -66261825 + B3A SINE B2 134 192 -1 6 1220 1048 217 10 10 chr6 83256945 83257154 -66259883 + B3 SINE B2 2 210 -6 6 1220 700 232 52 42 chr6 83257196 83257389 -66259648 + B4 SINE B4 13 207 -85 6 1220 1224 54 7 0 chr6 83257445 83257592 -66259445 + B1_Mus1 SINE Alu 1 148 0 6 1220 450 226 33 50 chr6 83257631 83257797 -66259240 + (CA)n Simple_repeat Simple_repeat 2 164 0 6 1220 890 87 245 7 chr6 83257797 83257948 -66259089 + B2_Mm2 SINE B2 3 189 -6 6 1220 450 178 59 10 chr6 83257948 83258127 -66258910 + (CA)n Simple_repeat Simple_repeat 1 187 0 6 1220 314 274 0 0 chr6 83258186 83258259 -66258778 + B4A SINE B4 220 292 0 6 1220 203 293 13 0 chr6 83258267 83258342 -66258695 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1220 263 184 11 146 chr6 83258382 83258471 -66258566 + RLTR25B LTR ERVK 422 498 -530 6 1220 461 178 167 0 chr6 83258408 83258498 -66258539 + B1_Mur2 SINE Alu 40 144 -5 6 1220 753 178 0 22 chr6 83258498 83258589 -66258448 + polypurine Low_complexity Low_complexity 1 88 0 6 1220 1490 58 16 5 chr6 83258589 83258780 -66258257 + B2_Mm2 SINE B2 2 194 -1 6 1220 753 178 0 22 chr6 83258780 83258872 -66258165 + polypurine Low_complexity Low_complexity 89 180 0 6 1220 225 207 103 0 chr6 83259127 83259185 -66257852 - B3 SINE B2 0 216 153 6 1220 371 21 21 0 chr6 83259704 83259752 -66257285 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1220 443 271 0 0 chr6 83261546 83261642 -66255395 + B1F SINE Alu 2 97 -52 6 1220 258 264 34 109 chr6 83261569 83261688 -66255349 + B4A SINE B4 110 219 -73 6 1220 24 0 0 0 chr6 83261695 83261719 -66255318 + AT_rich Low_complexity Low_complexity 1 24 0 6 1220 351 0 0 0 chr6 83261719 83261758 -66255279 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1220 346 213 209 1 chr6 83262338 83262435 -66254602 + B4A SINE B4 121 236 -56 6 1220 295 309 45 80 chr6 83263081 83263132 -66253905 + YREP_Mm Unknown Unknown 125 178 -1634 6 1220 189 0 0 0 chr6 83263132 83263153 -66253884 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 6 1220 295 309 45 80 chr6 83263153 83263277 -66253760 + YREP_Mm Unknown Unknown 179 294 -1518 6 1220 667 200 0 9 chr6 83263161 83263277 -66253760 - ID_B1 SINE B4 -6 218 104 6 1220 584 239 49 7 chr6 83263277 83263298 -66253739 - B1F SINE Alu 0 122 1 6 1220 1413 65 27 5 chr6 83263649 83263835 -66253202 - B2_Mm2 SINE B2 -5 190 1 6 1220 939 192 91 20 chr6 83264127 83264324 -66252713 - B3 SINE B2 -5 211 1 6 1220 426 302 32 0 chr6 83264415 83264541 -66252496 - MER2 DNA MER2_type -69 276 147 6 1220 519 266 123 25 chr6 83264705 83264867 -66252170 + MTE2b LTR MaLR 1 178 -201 6 1220 726 171 85 0 chr6 83264877 83265006 -66252031 + B1_Mur4 SINE Alu 4 143 -7 6 1220 360 0 0 0 chr6 83265189 83265229 -66251808 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1220 209 222 0 0 chr6 83265417 83265462 -66251575 + A-rich Low_complexity Low_complexity 1 45 0 6 1220 358 200 15 0 chr6 83266784 83266849 -66250188 - B1F SINE Alu -37 112 47 6 1220 23 0 0 0 chr6 83267832 83267855 -66249182 + AT_rich Low_complexity Low_complexity 1 23 0 6 1220 307 218 69 10 chr6 83267856 83267958 -66249079 + L1MC4 LINE L1 7160 7267 -775 6 1220 535 271 52 104 chr6 83267976 83268149 -66248888 + B3A SINE B2 1 164 -34 6 1220 486 75 0 0 chr6 83268150 83268217 -66248820 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1220 351 0 0 0 chr6 83268326 83268365 -66248672 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1220 773 230 165 76 chr6 83268603 83268918 -66248119 + MTEa LTR MaLR 3 345 -34 6 1220 221 83 28 0 chr6 83268948 83268984 -66248053 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1220 397 220 10 62 chr6 83268991 83269062 -66247975 - B4A SINE B4 0 292 213 6 1220 309 264 30 83 chr6 83269062 83269077 -66247960 - BC1_Mm scRNA scRNA -20 132 120 6 1220 786 224 135 96 chr6 83269077 83269358 -66247679 - B4A SINE B4 0 292 1 6 1220 370 216 11 73 chr6 83269368 83269474 -66247563 - ID4 SINE ID -33 119 8 6 1220 296 137 27 0 chr6 83269474 83269547 -66247490 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 6 1220 596 212 14 0 chr6 83269548 83269694 -66247343 + (CATA)n Simple_repeat Simple_repeat 3 150 0 6 1220 313 182 18 0 chr6 83269702 83269757 -66247280 - PB1D10 SINE Alu -61 56 1 6 1220 265 245 65 0 chr6 83269757 83269773 -66247264 - B4A SINE B4 -141 133 70 6 1220 240 130 0 0 chr6 83269800 83269846 -66247191 + (A)n Simple_repeat Simple_repeat 1 46 0 6 1220 935 304 21 14 chr6 83269990 83270274 -66246763 - B4A SINE B4 -2 290 5 6 1220 1932 130 213 0 chr6 83270285 83270632 -66246405 + MTC LTR MaLR 1 421 0 6 1220 315 71 0 0 chr6 83271070 83271112 -66245925 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1220 486 221 10 10 chr6 83271112 83271208 -66245829 - RSINE1 SINE B4 -25 140 45 6 1220 389 275 35 39 chr6 83271348 83271538 -66245499 + B4A SINE B4 1 229 -63 6 1220 506 226 47 158 chr6 83271543 83271584 -66245453 + B3A SINE B2 3 28 -170 6 1220 883 132 0 22 chr6 83271584 83271723 -66245314 + B1_Mus1 SINE Alu 1 136 -12 6 1220 391 18 18 18 chr6 83271723 83271780 -66245257 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 6 1220 506 226 47 158 chr6 83271780 83271952 -66245085 + B3A SINE B2 29 192 -6 6 1220 414 0 0 0 chr6 83271953 83271999 -66245038 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1220 199 361 38 85 chr6 83272063 83272275 -66244762 + L2a LINE L2 2938 3139 -287 6 1220 192 97 0 0 chr6 83272298 83272329 -66244708 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1220 312 269 0 0 chr6 83272429 83272522 -66244515 + (CATA)n Simple_repeat Simple_repeat 2 94 0 6 1220 572 315 23 0 chr6 83272522 83272652 -66244385 - RSINE1 SINE B4 -2 163 31 6 1220 1210 62 14 0 chr6 83272683 83272829 -66244208 - B1_Mus1 SINE Alu 0 148 1 6 1220 408 231 26 0 chr6 83272829 83272907 -66244130 - U6 snRNA snRNA -26 81 2 6 1220 744 250 65 0 chr6 83273002 83273170 -66243867 + ID_B1 SINE B4 2 180 -44 6 1220 659 175 26 17 chr6 83273195 83273311 -66243726 - PB1D9 SINE Alu 0 120 4 6 1220 1220 55 0 7 chr6 83274253 83274400 -66242637 - B1_Mus2 SINE Alu 0 147 2 6 1220 713 268 50 20 chr6 83274423 83274621 -66242416 - B3 SINE B2 -3 213 10 6 1220 454 204 9 9 chr6 83274639 83274753 -66242284 + (TA)n Simple_repeat Simple_repeat 1 114 0 6 1220 764 172 36 22 chr6 83274754 83274891 -66242146 - B1_Mur2 SINE Alu -7 142 4 6 1220 24 77 0 0 chr6 83274930 83274982 -66242055 + AT_rich Low_complexity Low_complexity 1 52 0 7 1220 666 124 29 0 chr6 83274985 83275090 -66241947 + B1_Mur3 SINE Alu 39 146 -3 7 1220 218 57 36 36 chr6 83275093 83275148 -66241889 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 7 1220 601 241 0 74 chr6 83275361 83275509 -66241528 + ID_B1 SINE B4 78 214 -10 7 1220 186 71 0 0 chr6 83276267 83276295 -66240742 + (CCGGG)n Simple_repeat Simple_repeat 3 30 0 7 1220 225 253 24 24 chr6 83276512 83276597 -66240440 - PB1D10 SINE Alu -31 86 2 7 1220 359 142 95 21 chr6 83276614 83276707 -66240330 - PB1 SINE Alu -1 126 2 7 1220 457 277 188 14 chr6 83277005 83277332 -66239705 - L1M4 LINE L1 -402 5776 5387 7 1220 303 49 0 0 chr6 83277332 83277373 -66239664 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1220 457 277 188 14 chr6 83277373 83277397 -66239640 - L1M4 LINE L1 -792 5386 5364 7 1220 521 284 97 11 chr6 83277534 83277719 -66239318 - L1M4 LINE L1 -840 5306 5106 7 1220 817 189 42 0 chr6 83277739 83277882 -66239155 - B1_Mur2 SINE Alu 0 149 1 7 1220 1082 173 91 10 chr6 83277887 83277921 -66239116 - B3 SINE B2 0 216 183 7 1220 225 0 0 0 chr6 83277921 83277946 -66239091 + (TATG)n Simple_repeat Simple_repeat 2 26 0 7 1220 1082 173 91 10 chr6 83277946 83278110 -66238927 - B3 SINE B2 -34 182 4 7 1220 386 302 38 38 chr6 83278833 83278959 -66238078 - B4A SINE B4 -28 264 139 7 1220 1787 142 115 0 chr6 83278959 83279289 -66237748 - ORR1C1 LTR MaLR 0 378 11 7 1220 216 205 0 0 chr6 83279487 83279526 -66237511 - B3A SINE B2 -157 41 3 7 1220 241 271 0 0 chr6 83279730 83279778 -66237259 - B3A SINE B2 -150 48 1 7 1220 849 219 6 6 chr6 83280351 83280512 -66236525 + B3A SINE B2 2 162 -36 7 1220 1977 109 69 27 chr6 83280525 83280920 -66236117 - RLTR11B LTR ERVK -8 445 1 7 1220 31 0 0 0 chr6 83280930 83280961 -66236076 + AT_rich Low_complexity Low_complexity 1 31 0 7 1220 509 226 88 0 chr6 83281064 83281166 -66235871 + RSINE1 SINE B4 4 114 -51 7 1220 180 0 0 0 chr6 83281168 83281188 -66235849 + (TC)n Simple_repeat Simple_repeat 1 20 0 7 1220 306 0 0 0 chr6 83281188 83281221 -66235816 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1220 343 208 236 36 chr6 83281262 83281372 -66235665 + B3A SINE B2 10 141 -57 7 1220 1002 110 27 14 chr6 83281473 83281621 -66235416 - B1_Mur4 SINE Alu 0 150 1 7 1220 226 55 16 113 chr6 83281627 83281689 -66235348 - B2_Mm1t SINE B2 0 193 138 7 1220 548 261 36 0 chr6 83282255 83282366 -66234671 + PB1 SINE Alu 1 115 -12 7 1220 1443 74 11 0 chr6 83282676 83282866 -66234171 - B2_Mm1t SINE B2 0 193 2 7 1220 28 0 0 0 chr6 83282933 83282961 -66234076 + AT_rich Low_complexity Low_complexity 1 28 0 7 1220 1196 49 0 14 chr6 83282983 83283127 -66233910 + B1_Mus2 SINE Alu 1 142 -5 7 1220 258 54 4 50 chr6 83283209 83283257 -66233780 + B1_Mur4 SINE Alu 69 145 -5 7 1220 633 131 0 0 chr6 83283262 83283369 -66233668 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 7 1220 1156 50 7 0 chr6 83283528 83283667 -66233370 - B1_Mus2 SINE Alu -6 141 2 7 1220 411 93 52 2 chr6 83283845 83283947 -66233090 - B2_Mm2 SINE B2 -8 185 1 7 1220 374 323 28 132 chr6 83284426 83284522 -66232515 - RSINE1 SINE B4 -2 163 79 7 1220 731 194 7 41 chr6 83284522 83284667 -66232370 - B1_Mur2 SINE Alu -8 141 2 7 1220 374 323 28 132 chr6 83284667 83284752 -66232285 - RSINE1 SINE B4 -87 78 1 7 1220 1206 34 0 39 chr6 83284756 83284909 -66232128 - B1_Mm SINE Alu 0 147 1 7 1220 691 237 122 0 chr6 83284950 83285089 -66231948 + RSINE1 SINE B4 2 157 -8 7 1220 246 256 39 0 chr6 83285312 83285390 -66231647 - ID4_ SINE ID -2 81 1 7 1220 623 235 0 0 chr6 83285716 83285831 -66231206 + PB1D7 SINE Alu 5 119 -1 7 1220 3074 23 0 11 chr6 83285876 83286226 -66230811 - ORR1A0 LTR MaLR 0 346 1 7 1220 511 99 0 0 chr6 83286590 83286661 -66230376 - B1_Mur2 SINE Alu -5 144 74 7 1220 1022 60 0 15 chr6 83286646 83286781 -66230256 - B1_Mm SINE Alu -13 134 2 7 1220 1163 105 37 32 chr6 83286791 83286978 -66230059 - B2_Mm2 SINE B2 -7 188 1 7 1220 1095 55 0 88 chr6 83287164 83287324 -66229713 + B1_Mm SINE Alu 1 146 -1 7 1220 289 214 235 12 chr6 83287482 83287567 -66229470 - PB1D9 SINE Alu -5 115 12 7 1220 631 286 88 10 chr6 83288611 83288805 -66228232 + B3 SINE B2 2 210 -6 7 1220 657 269 52 29 chr6 83289030 83289202 -66227835 + B3A SINE B2 4 179 -19 7 1220 189 0 0 0 chr6 83289208 83289229 -66227808 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1220 395 233 47 0 chr6 83289699 83289785 -66227252 - MER21B LTR ERV1 -769 94 5 7 1220 422 288 87 16 chr6 83289848 83289975 -66227062 - B4A SINE B4 -80 212 77 7 1220 270 274 83 19 chr6 83290749 83290857 -66226180 + PB1D9 SINE Alu 1 115 -5 7 1220 647 236 208 0 chr6 83292628 83292806 -66224231 + B3 SINE B2 1 215 -1 7 1220 1177 90 18 0 chr6 83294090 83294256 -66222781 - B2_Mm1a SINE B2 -22 171 3 7 1220 1077 144 127 10 chr6 83294265 83294462 -66222575 + URR1B DNA MER1_type 6 225 0 7 1220 325 203 15 15 chr6 83294504 83294569 -66222468 - MT2A LTR ERVL -117 416 352 7 1220 5285 65 92 7 chr6 83294569 83295882 -66221155 - MMVL30-int LTR ERV1 -315 3383 1959 7 1220 2958 29 0 9 chr6 83295894 83296240 -66220797 - L1Md_F3 LINE L1 -19 6565 6223 7 1220 3164 19 8 0 chr6 83296241 83296617 -66220420 + L1Md_F3 LINE L1 5827 6205 -379 7 1220 3412 52 19 11 chr6 83296617 83297081 -66219956 - MMVL30-int LTR ERV1 -1735 1963 1496 7 1220 891 193 52 12 chr6 83297374 83297547 -66219490 + B3 SINE B2 34 213 -3 7 1220 450 311 77 10 chr6 83297933 83298128 -66218909 - MLT1K LTR MaLR -186 409 202 7 1220 746 152 112 15 chr6 83298365 83298499 -66218538 - B1_Mur3 SINE Alu -1 148 2 7 1220 326 84 97 36 chr6 83298786 83298861 -66218176 - B1_Mur1 SINE Alu -1 148 26 7 1220 275 177 193 48 chr6 83299940 83300023 -66217014 - PB1D7 SINE Alu -3 117 23 7 1220 226 194 167 0 chr6 83300553 83300625 -66216412 + B4A SINE B4 2 85 -207 7 1220 663 240 52 77 chr6 83300621 83300815 -66216222 + B3A SINE B2 10 198 0 7 1220 799 239 21 76 chr6 83300813 83301049 -66215988 + B4 SINE B4 70 292 0 7 1220 338 258 74 16 chr6 83302105 83302159 -66214878 + BC1_Mm scRNA scRNA 4 64 -88 7 1220 529 161 55 71 chr6 83302159 83302286 -66214751 - RMER17C LTR ERVK 0 410 286 7 1220 679 231 178 6 chr6 83302400 83302661 -66214376 - MTE2b LTR MaLR -84 295 18 7 1220 2602 148 87 19 chr6 83303380 83303849 -66213188 - RLTR12A LTR ERVK -6 562 62 7 1220 798 202 137 20 chr6 83303932 83304129 -66212908 - ID_B1 SINE B4 -2 222 3 7 1220 1343 71 71 0 chr6 83304148 83304330 -66212707 - B2_Mm2 SINE B2 0 195 1 7 1220 289 287 36 36 chr6 83304330 83304431 -66212606 - PB1D10 SINE Alu -10 107 7 7 1220 655 285 7 7 chr6 83304362 83304514 -66212523 - ID_B1 SINE B4 -70 154 3 7 1220 355 214 247 0 chr6 83305111 83305200 -66211837 - RSINE1 SINE B4 -12 153 43 7 1220 427 270 39 51 chr6 83305489 83305645 -66211392 + MIR SINE MIR 28 181 -81 7 1220 263 301 23 30 chr6 83305705 83305837 -66211200 - B4 SINE B4 -134 158 27 7 1220 801 127 24 0 chr6 83305959 83306085 -66210952 - B1_Mur2 SINE Alu -8 141 13 7 1220 291 219 37 103 chr6 83305996 83306103 -66210934 - MT2B LTR ERVL -344 257 158 7 1220 422 205 26 0 chr6 83306125 83306203 -66210834 - ID_B1 SINE B4 -2 222 143 7 1220 1116 80 18 17 chr6 83306201 83306369 -66210668 - B1_Mm SINE Alu 0 311 8 7 1220 532 246 30 136 chr6 83306231 83306429 -66210608 - B4 SINE B4 -69 223 47 7 1220 499 189 123 42 chr6 83307101 83307272 -66209765 - B3 SINE B2 0 216 14 7 1220 557 190 69 0 chr6 83307447 83307563 -66209474 + B1_Mur1 SINE Alu 23 146 -3 7 1220 512 274 136 6 chr6 83307708 83307877 -66209160 + B4A SINE B4 102 292 0 7 1220 339 210 0 0 chr6 83307877 83307977 -66209060 + (CA)n Simple_repeat Simple_repeat 1 100 0 7 1220 562 158 217 0 chr6 83308510 83308630 -66208407 - B1_Mur1 SINE Alu 0 149 4 7 1220 776 170 35 14 chr6 83309069 83309212 -66207825 - B1_Mm SINE Alu 0 147 2 7 1220 251 241 138 0 chr6 83309310 83309368 -66207669 - RSINE1 SINE B4 -84 81 16 7 1220 230 274 32 0 chr6 83309456 83309518 -66207519 + MER115 DNA Tip100 39 102 -591 7 1220 298 354 0 58 chr6 83309945 83310065 -66206972 + RSINE1 SINE B4 30 142 -23 7 1220 228 287 88 53 chr6 83310092 83310206 -66206831 - Charlie12 DNA MER1_type -2745 128 11 7 1220 308 278 101 9 chr6 83310108 83310217 -66206820 + RMER30 DNA MER1_type 84 202 0 7 1220 195 139 0 0 chr6 83310478 83310514 -66206523 + (GGGTG)n Simple_repeat Simple_repeat 1 36 0 7 1220 505 301 90 43 chr6 83311043 83311413 -66205624 - Lx7 LINE L1 -221 7252 6854 7 1220 851 277 138 21 chr6 83311397 83311781 -66205256 + Lx8 LINE L1 6297 6725 -748 7 1220 27 0 0 0 chr6 83312375 83312402 -66204635 + AT_rich Low_complexity Low_complexity 1 27 0 7 1220 291 54 0 0 chr6 83314987 83315024 -66202013 + (CGGA)n Simple_repeat Simple_repeat 3 39 0 7 1220 198 0 0 0 chr6 83315398 83315420 -66201617 + (CTCG)n Simple_repeat Simple_repeat 1 22 0 7 1220 210 170 0 21 chr6 83317009 83317057 -66199980 + (CACAG)n Simple_repeat Simple_repeat 3 49 0 7 1220 1214 41 7 14 chr6 83321076 83321223 -66195814 + B1_Mus2 SINE Alu 1 146 -1 7 1220 594 215 16 8 chr6 83321227 83321349 -66195688 + B2_Mm2 SINE B2 47 169 -26 7 1220 578 217 41 66 chr6 83321884 83322081 -66194956 - B2_Mm2 SINE B2 -3 192 1 8 1220 396 108 102 62 chr6 83322115 83322243 -66194794 + RMER17C LTR ERVK 138 270 -140 8 1220 180 0 0 0 chr6 83322243 83322263 -66194774 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1220 352 268 93 77 chr6 83322265 83322500 -66194537 + B4 SINE B4 11 292 0 8 1220 608 247 55 44 chr6 83324665 83324847 -66192190 - B3A SINE B2 -10 188 5 8 1220 530 301 38 13 chr6 83326207 83326365 -66190672 - RSINE1 SINE B4 -2 163 2 8 1220 642 165 164 8 chr6 83326415 83326543 -66190494 + B1_Mur2 SINE Alu 2 149 0 8 1220 1057 134 145 0 chr6 83327744 83327930 -66189107 - URR1A DNA MER1_type -13 213 1 8 1220 366 327 18 0 chr6 83328081 83328191 -66188846 - RSINE1 SINE B4 -41 124 13 8 1220 248 354 106 0 chr6 83330602 83330715 -66186322 + MIRb SINE MIR 70 194 -14 8 1220 502 282 32 91 chr6 83331123 83331310 -66185727 - B3A SINE B2 -22 176 1 8 1220 267 318 58 12 chr6 83331653 83331739 -66185298 - PB1D10 SINE Alu -14 103 14 8 1220 188 208 94 0 chr6 83332164 83332217 -66184820 + L2 LINE L2 1840 1897 -1522 8 1220 195 42 0 0 chr6 83332261 83332285 -66184752 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1220 493 224 147 0 chr6 83332331 83332447 -66184590 - RSINE1 SINE B4 -31 134 2 8 1220 234 0 0 0 chr6 83332609 83332635 -66184402 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8 1220 1263 35 0 0 chr6 83332650 83332795 -66184242 - B1_Mus2 SINE Alu -2 145 1 8 1220 1522 47 15 26 chr6 83333215 83333410 -66183627 - B2_Mm2 SINE B2 -2 193 1 8 1220 514 217 116 0 chr6 83335090 83335219 -66181818 + B1_Mus2 SINE Alu 1 144 -5 8 1220 441 0 0 0 chr6 83335255 83335304 -66181733 + (GAGAA)n Simple_repeat Simple_repeat 2 50 0 8 1220 657 171 33 33 chr6 83335319 83335440 -66181597 + B1_Mus1 SINE Alu 27 147 -1 8 1220 256 258 119 45 chr6 83336162 83336296 -66180741 + L1M5 LINE L1 5363 5506 -734 8 1220 235 311 16 0 chr6 83336518 83336579 -66180458 - ID4_ SINE ID -1 82 21 8 1220 264 304 35 43 chr6 83336598 83336739 -66180298 + L1MB3 LINE L1 6044 6183 0 8 1220 551 202 47 24 chr6 83336763 83336890 -66180147 + RSINE1 SINE B4 1 130 -35 8 1220 405 268 103 17 chr6 83336900 83337075 -66179962 + L1MB8 LINE L1 5794 5983 -195 8 1220 308 291 126 17 chr6 83337385 83337504 -66179533 + L1MD3 LINE L1 7763 7894 -101 8 1220 564 279 45 23 chr6 83337591 83337723 -66179314 + RSINE1 SINE B4 2 136 -29 8 1220 361 263 78 29 chr6 83337931 83338033 -66179004 + B3A SINE B2 1 107 -91 8 1220 867 270 19 115 chr6 83338126 83338440 -66178597 + B4A SINE B4 5 288 -4 8 1220 358 266 17 52 chr6 83338513 83338628 -66178409 + MT2B LTR ERVL 154 264 -337 8 1220 919 36 0 0 chr6 83338545 83338657 -66178380 + B1_Mus1 SINE Alu 31 142 -6 8 1220 235 152 16 33 chr6 83338682 83338743 -66178294 + GA-rich Low_complexity Low_complexity 2 61 0 8 1220 251 245 34 41 chr6 83338805 83338924 -66178113 + L1M5 LINE L1 5692 5811 -362 8 1220 793 90 41 7 chr6 83338945 83339090 -66177947 + (GGGAGA)n Simple_repeat Simple_repeat 3 152 0 8 1220 1116 220 5 18 chr6 83339125 83339343 -66177694 + B3 SINE B2 1 215 -1 8 1220 514 165 165 0 chr6 83339595 83339692 -66177345 + B3A SINE B2 2 114 -84 8 1220 363 44 0 0 chr6 83339705 83339750 -66177287 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1220 557 192 61 53 chr6 83340244 83340376 -66176661 + B1F SINE Alu 12 144 -5 8 1220 448 285 119 28 chr6 83341171 83341424 -66175613 - B4A SINE B4 -16 276 1 8 1220 896 132 73 0 chr6 83341446 83341582 -66175455 - B1_Mm SINE Alu -1 146 1 8 1220 511 227 45 0 chr6 83341586 83341696 -66175341 - B4A SINE B4 -70 222 108 8 1220 304 338 91 7 chr6 83342025 83342168 -66174869 + MIRb SINE MIR 66 220 -48 8 1220 352 329 134 14 chr6 83342928 83343070 -66173967 - RSINE1 SINE B4 -4 161 3 8 1220 2241 136 219 9 chr6 83343441 83343885 -66173152 + RMER15 LTR ERVL 37 573 -2 8 1220 302 325 31 16 chr6 83343894 83344022 -66173015 - ORR1E LTR MaLR -224 135 6 8 1220 405 358 24 91 chr6 83344053 83344382 -66172655 + L1MC4 LINE L1 6712 7018 -1024 8 1220 601 194 136 20 chr6 83344695 83344842 -66172195 - B3A SINE B2 -14 184 21 8 1220 1236 41 0 0 chr6 83344899 83345045 -66171992 - B1_Mus2 SINE Alu 0 147 2 8 1220 394 246 0 3 chr6 83345131 83345257 -66171780 - L1MB1 LINE L1 -240 5949 5825 8 1220 704 189 39 8 chr6 83346097 83346225 -66170812 + B1_Mur1 SINE Alu 4 135 -14 8 1220 504 256 25 14 chr6 83346350 83346493 -66170544 - ID_B1 SINE B4 -1 223 83 8 1220 280 255 81 7 chr6 83346790 83346920 -66170117 + L1M2 LINE L1 5378 5522 -657 8 1220 241 232 96 128 chr6 83346933 83347027 -66170010 - MT2B LTR ERVL -330 271 181 8 1220 346 179 29 43 chr6 83346971 83347041 -66169996 - B1_Mus1 SINE Alu -78 70 2 8 1220 284 363 58 29 chr6 83347185 83347324 -66169713 - ID_B1 SINE B4 -3 221 79 8 1220 481 0 31 15 chr6 83348390 83348455 -66168582 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 8 1220 227 215 0 122 chr6 83348557 83348631 -66168406 - MamRep137 DNA TcMar? -234 210 146 8 1220 441 211 87 9 chr6 83348755 83348870 -66168167 + RSINE1 SINE B4 38 161 -4 8 1220 820 125 28 42 chr6 83349737 83349879 -66167158 - B1_Mur3 SINE Alu -8 141 2 8 1220 206 267 107 0 chr6 83350112 83350187 -66166850 + L2c LINE L2 3091 3173 -214 8 1220 427 293 154 0 chr6 83351028 83351151 -66165886 - B1F1 SINE Alu -7 142 1 8 1220 211 235 0 62 chr6 83351267 83351444 -66165593 + (TG)n Simple_repeat Simple_repeat 1 166 0 8 1220 201 309 0 47 chr6 83351447 83351532 -66165505 + (TATG)n Simple_repeat Simple_repeat 4 84 0 8 1220 385 254 40 65 chr6 83351535 83351706 -66165331 - B3 SINE B2 -14 202 40 8 1220 1321 258 34 42 chr6 83352096 83352452 -66164585 + MTE2a LTR MaLR 20 372 -7 8 1220 285 297 65 21 chr6 83354984 83355077 -66161960 + B4 SINE B4 107 203 -89 8 1220 223 250 0 0 chr6 83355100 83355144 -66161893 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1220 658 287 112 114 chr6 83356284 83356642 -66160395 - MTEa LTR MaLR -13 366 10 8 1220 275 144 34 18 chr6 83356984 83357048 -66159989 + ID4_ SINE ID 5 68 -15 8 1220 600 289 94 0 chr6 83357084 83357243 -66159794 + B3A SINE B2 1 174 -24 8 1220 966 143 20 7 chr6 83357264 83357412 -66159625 - B1_Mur4 SINE Alu 0 150 1 8 1220 339 248 129 62 chr6 83357428 83357652 -66159385 + L1MC4 LINE L1 7804 8042 0 8 1220 1408 68 0 6 chr6 83357943 83358120 -66158917 - B2_Mm2 SINE B2 -18 177 2 8 1220 357 306 58 23 chr6 83358475 83358649 -66158388 + L3 LINE CR1 2583 2762 -1727 8 1220 199 136 34 0 chr6 83359188 83359247 -66157790 + T-rich Low_complexity Low_complexity 1 61 0 8 1220 285 246 32 16 chr6 83361198 83361260 -66155777 + ID4 SINE ID 15 77 -6 8 1220 285 329 0 13 chr6 83361260 83361275 -66155762 + ID_B1 SINE B4 15 90 -134 8 1221 244 221 15 0 chr6 83363759 83363827 -66153210 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 8 1221 1090 164 92 0 chr6 83363863 83364058 -66152979 + B3 SINE B2 4 216 0 8 1221 607 204 18 9 chr6 83364088 83364202 -66152835 + PB1D10 SINE Alu 2 116 -1 8 1221 611 150 141 8 chr6 83364376 83364504 -66152533 - B1_Mur4 SINE Alu 0 150 6 8 1221 544 285 24 0 chr6 83364826 83364949 -66152088 + RSINE1 SINE B4 11 136 -29 8 1221 396 220 16 128 chr6 83364972 83365097 -66151940 + MT2B LTR ERVL 155 265 -336 8 1221 751 166 6 7 chr6 83364990 83365127 -66151910 + PB1D9 SINE Alu 6 141 -8 8 1221 449 275 174 39 chr6 83365127 83365168 -66151869 + B4 SINE B4 91 292 0 8 1221 372 305 27 62 chr6 83365515 83365627 -66151410 - PB1D10 SINE Alu -9 108 1 8 1221 605 262 87 7 chr6 83365627 83365696 -66151341 - ID SINE ID -143 81 1 8 1221 198 0 0 0 chr6 83365825 83365847 -66151190 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 1221 207 0 0 0 chr6 83366616 83366639 -66150398 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1221 939 70 23 0 chr6 83367475 83367603 -66149434 - B1_Mus2 SINE Alu -8 139 9 8 1221 1436 145 97 28 chr6 83367640 83367930 -66149107 - Lx4A LINE L1 -2 7056 6747 8 1221 180 0 0 0 chr6 83368229 83368249 -66148788 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1221 328 265 109 36 chr6 83369394 83369531 -66147506 + MER5C1 DNA MER1_type 86 232 -31 8 1221 341 314 25 0 chr6 83369531 83369652 -66147385 + L1MA4 LINE L1 6018 6141 -159 8 1221 926 173 78 0 chr6 83369653 83369832 -66147205 + B3 SINE B2 3 195 -21 8 1221 346 225 143 14 chr6 83369837 83369977 -66147060 + L1MA5 LINE L1 6123 6280 -20 8 1221 634 246 7 7 chr6 83370084 83370219 -66146818 + RSINE1 SINE B4 2 136 -29 8 1221 374 311 87 23 chr6 83370274 83370540 -66146497 + L1MB7 LINE L1 4871 5153 -993 8 1221 322 281 46 46 chr6 83370543 83370651 -66146386 + RSINE1 SINE B4 12 119 -46 8 1221 405 248 73 9 chr6 83370848 83370958 -66146079 + PB1D10 SINE Alu 1 117 0 8 1221 631 234 122 24 chr6 83371107 83371397 -66145640 + L1MB7 LINE L1 5844 6169 -15 8 1221 201 74 0 0 chr6 83371406 83371433 -66145604 + (GGA)n Simple_repeat Simple_repeat 2 28 0 9 1221 616 259 20 33 chr6 83371452 83371604 -66145433 + RSINE1 SINE B4 2 151 -14 9 1221 216 0 0 0 chr6 83371712 83371736 -66145301 + (CAG)n Simple_repeat Simple_repeat 3 26 0 9 1221 298 227 23 141 chr6 83372827 83372955 -66144082 + ID_B1 SINE B4 80 192 -32 9 1221 769 181 124 31 chr6 83373083 83373277 -66143760 - B3 SINE B2 -4 212 1 9 1221 225 0 0 0 chr6 83373583 83373608 -66143429 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1221 262 279 103 11 chr6 83374355 83374442 -66142595 + PB1 SINE Alu 11 105 -22 9 1221 26 30 0 0 chr6 83374524 83374557 -66142480 + AT_rich Low_complexity Low_complexity 1 33 0 9 1221 466 263 61 9 chr6 83375189 83375304 -66141733 + RSINE1 SINE B4 2 122 -43 9 1221 1135 70 42 0 chr6 83375568 83375710 -66141327 + B1_Mus1 SINE Alu 1 148 0 9 1221 225 0 0 0 chr6 83375710 83375735 -66141302 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1221 279 133 0 0 chr6 83375735 83375780 -66141257 + (GGA)n Simple_repeat Simple_repeat 2 46 0 9 1221 815 159 8 8 chr6 83375968 83376101 -66140936 - B1_Mur4 SINE Alu -13 137 5 9 1221 480 35 0 0 chr6 83376113 83376171 -66140866 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1221 216 267 0 0 chr6 83376554 83376599 -66140438 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1221 644 212 45 32 chr6 83377396 83377552 -66139485 + RSINE1 SINE B4 4 161 -4 9 1221 228 265 129 24 chr6 83378115 83378200 -66138837 + LTR16A LTR ERVL 349 442 -9 9 1221 225 279 114 29 chr6 83378288 83378354 -66138683 - RMER15 LTR ERVL -183 392 315 9 1221 502 271 35 35 chr6 83378354 83378526 -66138511 + B4A SINE B4 1 172 -120 9 1221 315 0 0 0 chr6 83378577 83378612 -66138425 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1221 355 163 192 58 chr6 83378833 83378937 -66138100 + B1_Mus2 SINE Alu 3 120 -27 9 1221 201 94 0 0 chr6 83379085 83379117 -66137920 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1221 543 224 123 19 chr6 83379121 83379281 -66137756 - B3 SINE B2 -33 160 3 9 1221 306 0 0 0 chr6 83379572 83379606 -66137431 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1221 256 265 0 0 chr6 83379646 83379695 -66137342 + tRNA-Ala-GCY_ tRNA tRNA 19 67 -8 9 1221 250 288 0 48 chr6 83379695 83379708 -66137329 + ID4_ SINE ID 25 83 0 9 1221 389 96 301 0 chr6 83379899 83379982 -66137055 + B1_Mus1 SINE Alu 40 147 -1 9 1221 273 240 43 129 chr6 83379901 83380017 -66137020 + MT2B LTR ERVL 198 304 -297 9 1221 393 275 75 75 chr6 83380017 83380178 -66136859 - RSINE1 SINE B4 -2 163 3 9 1221 273 240 43 129 chr6 83380178 83380200 -66136837 + MT2B LTR ERVL 305 324 -277 9 1221 612 182 107 0 chr6 83380236 83380357 -66136680 + B1_Mus2 SINE Alu 14 147 0 9 1221 22 0 0 0 chr6 83380419 83380441 -66136596 + AT_rich Low_complexity Low_complexity 1 22 0 9 1221 399 231 37 37 chr6 83380559 83380667 -66136370 - PB1D10 SINE Alu -2 115 8 9 1221 253 233 16 16 chr6 83380614 83380675 -66136362 - B4A SINE B4 -148 144 84 9 1221 764 191 8 0 chr6 83380882 83381013 -66136024 + B1_Mur4 SINE Alu 3 134 -16 9 1221 706 269 119 0 chr6 83381040 83381233 -66135804 + B3 SINE B2 1 216 0 9 1221 265 357 109 66 chr6 83382664 83382847 -66134190 + B4 SINE B4 102 292 0 9 1221 211 344 91 67 chr6 83383054 83383219 -66133818 - MER5B DNA MER1_type -8 170 2 9 1221 357 217 0 0 chr6 83383431 83383514 -66133523 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 9 1221 1333 239 55 82 chr6 83384257 83384732 -66132305 + RMER5 LTR ERV1 45 506 -28 9 1221 331 230 95 0 chr6 83385772 83385846 -66131191 + ID2 SINE ID 2 82 -1 9 1221 283 276 59 12 chr6 83385878 83385979 -66131058 + PB1D10 SINE Alu 7 116 -33 9 1221 216 0 0 0 chr6 83386239 83386263 -66130774 + (G)n Simple_repeat Simple_repeat 1 24 0 9 1221 801 31 0 0 chr6 83386479 83386575 -66130462 + (GGAGA)n Simple_repeat Simple_repeat 1 96 0 9 1221 481 283 135 112 chr6 83386777 83386992 -66130045 - ID_B1 SINE B4 0 224 5 9 1221 534 187 138 0 chr6 83387001 83387124 -66129913 - B1_Mur2 SINE Alu -7 142 3 9 1221 518 108 0 12 chr6 83390790 83390874 -66126163 + (CA)n Simple_repeat Simple_repeat 2 84 0 9 1221 381 198 0 0 chr6 83391113 83391204 -66125833 + (CA)n Simple_repeat Simple_repeat 2 92 0 9 1221 256 360 16 23 chr6 83392025 83392153 -66124884 - MIRb SINE MIR -141 127 1 9 1221 216 189 65 25 chr6 83392710 83392773 -66124264 - MIR SINE MIR -107 169 99 9 1221 266 294 122 27 chr6 83394392 83394539 -66122498 - MIRb SINE MIR -65 203 43 9 1221 185 231 19 0 chr6 83394662 83394714 -66122323 + L2c LINE L2 3105 3157 -230 9 1221 745 205 56 0 chr6 83395290 83395451 -66121586 - URR1A DNA MER1_type 0 226 57 9 1221 193 152 65 0 chr6 83395705 83395751 -66121286 + L2 LINE L2 1550 1598 -1821 9 1221 279 286 91 45 chr6 83397488 83397522 -66119515 + MER3 DNA MER1_type 2 34 -175 9 1221 449 219 25 154 chr6 83397522 83397684 -66119353 - B1F SINE Alu -8 141 1 9 1221 279 286 62 31 chr6 83397684 83397825 -66119212 + MER3 DNA MER1_type 35 209 0 9 1221 250 295 51 0 chr6 83398014 83398092 -66118945 + ID4 SINE ID 2 83 0 9 1221 609 249 119 25 chr6 83398100 83398302 -66118735 + B4A SINE B4 4 224 -68 9 1221 1228 178 0 14 chr6 83398309 83398525 -66118512 + B3 SINE B2 2 214 -2 9 1221 437 245 20 0 chr6 83398557 83398655 -66118382 + B1F1 SINE Alu 48 147 -2 9 1221 360 305 37 74 chr6 83398655 83398720 -66118317 + B4A SINE B4 133 289 -3 9 1221 838 217 74 5 chr6 83399286 83399476 -66117561 + B3 SINE B2 2 204 -12 9 1221 425 295 0 9 chr6 83399979 83400092 -66116945 - MER5A1 DNA MER1_type -3 163 52 9 1221 291 296 107 27 chr6 83400198 83400347 -66116690 + MER5B DNA MER1_type 1 161 -17 9 1221 575 149 0 9 chr6 83402427 83402535 -66114502 + GA-rich Low_complexity Low_complexity 2 108 0 9 1221 414 331 14 14 chr6 83402629 83402773 -66114264 + RSINE1 SINE B4 22 165 0 9 1221 210 91 0 0 chr6 83405711 83405744 -66111293 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1221 186 133 0 0 chr6 83406334 83406364 -66110673 + (CCG)n Simple_repeat Simple_repeat 2 31 0 9 1221 198 143 0 0 chr6 83406493 83406528 -66110509 + (CGG)n Simple_repeat Simple_repeat 3 37 0 9 1221 24 53 0 0 chr6 83406540 83406578 -66110459 + GC_rich Low_complexity Low_complexity 1 38 0 9 1221 21 0 0 0 chr6 83406690 83406711 -66110326 + GC_rich Low_complexity Low_complexity 1 21 0 9 1221 441 0 0 0 chr6 83407742 83407791 -66109246 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1221 360 314 18 30 chr6 83408904 83409068 -66107969 - RMER15 LTR ERVL -42 533 372 9 1221 198 244 178 0 chr6 83409909 83409999 -66107038 + MER5A DNA MER1_type 44 149 -40 9 1221 229 288 182 12 chr6 83410012 83410065 -66106972 - B2_Mm2 SINE B2 -2 193 1 9 1221 422 243 5 27 chr6 83410065 83410177 -66106860 - RSINE1 SINE B4 -184 108 1 9 1221 497 229 14 43 chr6 83410584 83410729 -66106308 + RSINE1 SINE B4 1 138 -27 9 1221 296 281 11 11 chr6 83410952 83411042 -66105995 - RSINE1 SINE B4 -72 93 4 9 1221 772 169 229 0 chr6 83411261 83411427 -66105610 - B3 SINE B2 -11 205 2 9 1221 792 211 30 50 chr6 83411941 83412141 -66104896 - B3A SINE B2 -2 196 1 9 1221 229 348 0 0 chr6 83412380 83412449 -66104588 - MLT1I LTR MaLR -6 405 337 9 1221 554 274 144 84 chr6 83412465 83412639 -66104398 + B4A SINE B4 7 217 -75 9 1221 306 0 0 0 chr6 83412639 83412673 -66104364 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 9 1221 670 176 39 190 chr6 83412679 83412804 -66104233 + B3A SINE B2 1 96 -102 9 1221 804 196 0 0 chr6 83412804 83412952 -66104085 - B1_Mus1 SINE Alu 0 148 1 9 1221 670 176 39 190 chr6 83412952 83413058 -66103979 + B3A SINE B2 97 197 -1 9 1221 554 274 144 84 chr6 83413058 83413139 -66103898 + B4A SINE B4 218 285 -7 9 1221 261 180 0 0 chr6 83413145 83413195 -66103842 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1221 491 196 0 0 chr6 83414314 83414411 -66102626 - ID_B1 SINE B4 -1 223 127 9 1221 1242 99 10 0 chr6 83414429 83414835 -66102202 + (GAAA)n Simple_repeat Simple_repeat 1 410 0 9 1221 1160 54 0 7 chr6 83414902 83415043 -66101994 + B1_Mus1 SINE Alu 1 141 -7 9 1221 255 31 0 0 chr6 83415043 83415075 -66101962 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 1221 715 142 119 0 chr6 83415095 83415229 -66101808 + B1_Mur4 SINE Alu 1 150 0 9 1221 832 36 0 0 chr6 83415269 83415379 -66101658 + B1_Mus2 SINE Alu 38 147 0 9 1221 366 23 0 0 chr6 83415454 83415497 -66101540 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1221 680 184 42 14 chr6 83416704 83416847 -66100190 + B1_Mur3 SINE Alu 2 148 -1 9 1221 243 0 0 0 chr6 83417281 83417308 -66099729 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1221 267 175 15 31 chr6 83417542 83417607 -66099430 + MER53 DNA hAT 1 64 -129 9 1221 603 253 56 5 chr6 83417634 83417829 -66099208 - B4A SINE B4 -87 205 1 9 1221 378 345 130 38 chr6 83418319 83418581 -66098456 - L1M5 LINE L1 -306 5818 5533 9 1221 570 246 33 0 chr6 83418622 83418744 -66098293 + B3A SINE B2 9 134 -64 9 1221 360 0 0 0 chr6 83418764 83418804 -66098233 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1221 186 43 0 0 chr6 83418805 83418828 -66098209 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 9 1221 1534 269 10 32 chr6 83418831 83419238 -66097799 - Lx5 LINE L1 -17 7033 6636 1 1221 912 148 28 0 chr6 83419240 83419382 -66097655 - B1_Mus2 SINE Alu 0 147 2 1 1221 621 134 78 26 chr6 83419412 83419527 -66097510 - B1_Mur3 SINE Alu -8 141 21 1 1221 2982 50 7 17 chr6 83419594 83419606 -66097431 - MTB LTR MaLR 0 400 394 1 1221 3225 48 2 0 chr6 83419606 83420001 -66097036 - MTA_Mm LTR MaLR 0 396 1 1 1221 2982 50 7 17 chr6 83420001 83420392 -66096645 - MTB LTR MaLR -7 393 1 1 1221 377 257 60 67 chr6 83420412 83420562 -66096475 + MT2B LTR ERVL 326 474 -127 1 1221 372 97 0 0 chr6 83420589 83420651 -66096386 + (CCAA)n Simple_repeat Simple_repeat 2 63 0 1 1221 532 263 37 37 chr6 83420757 83420919 -66096118 + RSINE1 SINE B4 4 165 0 1 1221 446 180 114 69 chr6 83420942 83421073 -66095964 + B1_Mur1 SINE Alu 5 141 -8 1 1221 281 273 45 0 chr6 83421096 83421162 -66095875 + B4A SINE B4 216 284 -8 1 1221 338 107 18 0 chr6 83421203 83421259 -66095778 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1221 539 318 16 5 chr6 83422888 83423078 -66093959 - B3A SINE B2 -4 194 3 1 1221 378 0 0 0 chr6 83423278 83423320 -66093717 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1221 207 0 0 0 chr6 83423320 83423342 -66093695 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 1221 741 242 22 75 chr6 83423766 83423994 -66093043 - B3 SINE B2 0 216 1 1 1221 572 293 0 0 chr6 83424062 83424195 -66092842 - RSINE1 SINE B4 -28 137 5 1 1221 207 0 0 0 chr6 83424670 83424693 -66092344 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1221 745 133 23 8 chr6 83424693 83424822 -66092215 - B1_Mur4 SINE Alu -11 139 9 1 1221 659 231 110 39 chr6 83425304 83425525 -66091512 - ID_B1 SINE B4 -48 244 8 1 1221 296 240 99 0 chr6 83425785 83425889 -66091148 + B1_Mur3 SINE Alu 2 120 0 1 1221 506 206 59 78 chr6 83425890 83426043 -66090994 + RMER10B LTR ERVL 203 352 -46 1 1221 680 233 68 19 chr6 83426084 83426290 -66090747 + B3 SINE B2 1 216 0 1 1221 332 275 64 9 chr6 83426971 83427081 -66089956 + B1F SINE Alu 17 132 -17 1 1221 267 300 80 0 chr6 83428095 83428195 -66088842 + L1MB8 LINE L1 5086 5193 -953 1 1221 447 265 20 0 chr6 83428203 83428305 -66088732 + ID_B1 SINE B4 113 216 -8 1 1221 446 254 121 89 chr6 83428320 83428510 -66088527 + B3A SINE B2 1 196 -2 1 1221 354 331 94 26 chr6 83428521 83428713 -66088324 + L1MB8 LINE L1 5199 5403 -743 1 1221 324 288 203 22 chr6 83428864 83429184 -66087853 + L1MB8 LINE L1 5760 6137 -41 1 1221 880 210 225 58 chr6 83429195 83429542 -66087495 + MTD LTR MaLR 1 405 -14 1 1221 223 224 43 29 chr6 83430531 83430600 -66086437 - MIR SINE MIR -110 98 29 1 1221 328 257 0 0 chr6 83432121 83432191 -66084846 - PB1D10 SINE Alu -47 70 1 1 1221 353 353 68 5 chr6 83432426 83432617 -66084420 + L2b LINE L2 2921 3123 -252 1 1221 292 267 29 38 chr6 83433028 83433133 -66083904 + PB1D7 SINE Alu 14 117 -3 1 1221 286 335 143 4 chr6 83433171 83433408 -66083629 - L1MC LINE L1 -2081 5801 5532 1 1221 314 296 49 65 chr6 83435089 83435212 -66081825 + RSINE1 SINE B4 2 122 -43 1 1221 195 162 0 0 chr6 83435212 83435249 -66081788 + CT-rich Low_complexity Low_complexity 4 40 0 1 1221 384 71 0 0 chr6 83435249 83435305 -66081732 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1221 949 124 101 11 chr6 83435362 83435541 -66081496 + B2_Mm2 SINE B2 1 195 0 1 1221 510 96 0 0 chr6 83435560 83435633 -66081404 + (CATA)n Simple_repeat Simple_repeat 2 74 0 1 1221 724 194 0 46 chr6 83435633 83435784 -66081253 + B1_Mur2 SINE Alu 2 145 -4 1 1221 567 0 0 0 chr6 83436366 83436429 -66080608 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 1 1221 417 20 0 0 chr6 83436782 83436832 -66080205 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1221 626 144 93 0 chr6 83436832 83436950 -66080087 - B1_Mur4 SINE Alu -16 134 6 1 1221 427 211 3 0 chr6 83437298 83437393 -66079644 + RMER1A Other Other 1 68 -962 1 1221 3840 151 92 4 chr6 83437379 83438097 -66078940 + RMER1A Other Other 244 1024 -6 1 1221 744 218 10 77 chr6 83438100 83438309 -66078728 - B3A SINE B2 -2 196 2 1 1221 283 202 0 102 chr6 83439952 83440040 -66076997 - ID_B1 SINE B4 0 224 146 1 1221 602 128 11 11 chr6 83439961 83440078 -66076959 - B1_Mur4 SINE Alu -3 147 1 1 1221 503 252 29 7 chr6 83440103 83440243 -66076794 + B1F2 SINE Alu 4 146 -3 1 1221 205 130 43 0 chr6 83440874 83440920 -66076117 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1221 768 88 0 0 chr6 83441303 83441417 -66075620 + (TTCC)n Simple_repeat Simple_repeat 1 114 0 1 1221 328 287 71 35 chr6 83441526 83441667 -66075370 - MIR SINE MIR -71 191 46 1 1221 556 274 108 60 chr6 83441941 83442190 -66074847 + B4 SINE B4 2 262 -30 1 1221 1407 60 16 0 chr6 83442295 83442478 -66074559 - B2_Mm2 SINE B2 -6 189 4 1 1221 190 183 14 14 chr6 83442577 83442649 -66074388 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1221 217 213 0 0 chr6 83442658 83442705 -66074332 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1221 22 0 0 0 chr6 83442730 83442752 -66074285 + AT_rich Low_complexity Low_complexity 1 22 0 1 1221 197 108 27 0 chr6 83442760 83442797 -66074240 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 1 1221 725 149 224 44 chr6 83443090 83443273 -66073764 - B3 SINE B2 0 216 1 1 1221 527 229 56 21 chr6 83443458 83443601 -66073436 + B1F SINE Alu 1 148 -1 1 1221 1019 197 52 38 chr6 83444098 83444309 -66072728 + B3 SINE B2 3 216 0 1 1221 804 262 92 19 chr6 83444320 83444581 -66072456 + B4A SINE B4 1 280 -12 1 1221 1022 53 33 12 chr6 83444597 83444846 -66072191 + (CA)n Simple_repeat Simple_repeat 1 254 0 1 1221 368 277 21 0 chr6 83444961 83445055 -66071982 + RSINE1 SINE B4 30 125 -40 1 1221 291 54 0 0 chr6 83445078 83445115 -66071922 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1221 670 264 60 6 chr6 83445189 83445357 -66071680 + B4 SINE B4 3 179 -113 1 1221 258 247 25 49 chr6 83445415 83445496 -66071541 - MLT1F1 LTR MaLR -489 80 2 1 1221 208 283 16 16 chr6 83446280 83446341 -66070696 + L3 LINE CR1 4415 4475 -14 1 1221 328 323 43 50 chr6 83448295 83448331 -66068706 + ID_B1 SINE B4 70 208 -16 1 1221 392 260 67 0 chr6 83448331 83448433 -66068604 + B1F SINE Alu 23 131 -18 1 1221 1639 144 6 8 chr6 83448433 83448702 -66068335 + ORR1A2 LTR MaLR 1 309 -65 1 1221 518 207 77 56 chr6 83448921 83449064 -66067973 + B1_Mur1 SINE Alu 3 148 -1 1 1221 634 196 64 21 chr6 83449644 83449785 -66067252 - RSINE1 SINE B4 -18 147 1 1 1221 324 301 27 40 chr6 83449811 83449960 -66067077 + B1_Mur2 SINE Alu 2 148 -1 1 1221 405 0 0 0 chr6 83450432 83450477 -66066560 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1221 760 222 10 62 chr6 83450555 83450747 -66066290 + B3 SINE B2 35 216 0 1 1221 641 152 19 0 chr6 83451331 83451436 -66065601 - B1_Mus2 SINE Alu -19 128 22 1 1221 686 188 126 12 chr6 83453654 83453821 -66063216 - MTEa LTR MaLR -8 371 186 1 1221 453 184 385 10 chr6 83453914 83454018 -66063019 - PB1D9 SINE Alu -5 143 1 1 1221 253 319 75 47 chr6 83454129 83454191 -66062846 + L2a LINE L2 2295 2363 -1056 1 1221 207 0 0 0 chr6 83454191 83454214 -66062823 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1221 253 319 75 47 chr6 83454214 83454365 -66062672 + L2a LINE L2 2364 2513 -906 1 1221 353 306 34 34 chr6 83454373 83454522 -66062515 + B1F SINE Alu 1 149 0 1 1221 557 229 9 0 chr6 83454538 83454643 -66062394 + B3A SINE B2 2 107 -91 1 1221 192 111 0 0 chr6 83454687 83454723 -66062314 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1221 249 269 0 0 chr6 83454730 83454782 -66062255 + ID4 SINE ID 2 53 -30 1 1221 433 234 83 14 chr6 83455065 83455215 -66061822 + Lx6 LINE L1 7293 7437 -23 1 1221 804 328 132 15 chr6 83455250 83455712 -66061325 + L2a LINE L2 2910 3425 -1 1 1221 575 175 41 0 chr6 83455930 83456027 -66061010 + B1_Mur1 SINE Alu 49 149 0 1 1221 916 120 0 39 chr6 83456108 83456264 -66060773 + B1_Mur4 SINE Alu 1 150 0 1 1221 422 143 14 0 chr6 83457163 83457233 -66059804 + B1_Mus2 SINE Alu 77 147 0 1 1221 254 232 188 10 chr6 83457260 83457356 -66059681 - PB1D10 SINE Alu 0 117 5 1 1221 349 238 0 0 chr6 83457425 83457488 -66059549 - RSINE1 SINE B4 -100 65 3 1 1221 810 230 46 0 chr6 83457873 83458047 -66058990 + ID_B1 SINE B4 36 217 -7 1 1221 450 265 67 22 chr6 83458054 83458189 -66058848 + RSINE1 SINE B4 2 142 -23 1 1221 278 309 0 90 chr6 83458389 83458478 -66058559 + PB1D7 SINE Alu 34 114 -6 1 1221 919 108 7 28 chr6 83458503 83458646 -66058391 + B2_Mm2 SINE B2 4 143 -52 1 1221 423 0 0 0 chr6 83458647 83458694 -66058343 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1221 279 0 0 0 chr6 83458696 83458727 -66058310 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1221 273 323 87 16 chr6 83458967 83458987 -66058050 + B1F SINE Alu 2 136 -13 1 1221 439 269 9 19 chr6 83458987 83459093 -66057944 + ID_B1 SINE B4 107 211 -13 1 1221 461 225 18 26 chr6 83459194 83459308 -66057729 - MTEb LTR MaLR -4 375 263 1 1221 1591 266 47 29 chr6 83459805 83460458 -66056579 - Lx5 LINE L1 -94 6956 6455 1 1221 392 322 96 59 chr6 83460667 83460938 -66056099 - B4 SINE B4 -11 281 1 1 1221 614 358 34 34 chr6 83461023 83461315 -66055722 + B4A SINE B4 1 292 0 1 1221 267 31 0 0 chr6 83461339 83461371 -66055666 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 1 1221 258 270 0 0 chr6 83462270 83462333 -66054704 + MIR SINE MIR 126 188 -74 1 1221 548 243 73 56 chr6 83462346 83462525 -66054512 + B3A SINE B2 2 183 -15 1 1221 282 29 0 0 chr6 83462536 83462571 -66054466 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1 1221 893 260 29 0 chr6 83462571 83462775 -66054262 + B3 SINE B2 3 212 -4 1 1221 423 0 0 0 chr6 83462777 83462824 -66054213 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1 1221 807 219 57 31 chr6 83463398 83463591 -66053446 + B3A SINE B2 1 198 0 1 1221 293 319 96 0 chr6 83463692 83463786 -66053251 + MLT1H2 LTR MaLR 82 184 -305 1 1221 277 203 89 77 chr6 83463832 83464022 -66053015 + MLT1H2 LTR MaLR 358 588 -7 1 1221 521 264 24 0 chr6 83464285 83464410 -66052627 - ID_B1 SINE B4 -2 222 95 1 1221 365 276 30 10 chr6 83464507 83464606 -66052431 - RSINE1 SINE B4 -36 129 29 1 1221 810 188 14 0 chr6 83464616 83464754 -66052283 - B1_Mus2 SINE Alu -7 140 1 1 1221 333 0 0 0 chr6 83465106 83465143 -66051894 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1221 882 274 90 8 chr6 83465168 83465436 -66051601 - B4A SINE B4 -2 290 1 1 1221 370 316 34 75 chr6 83465501 83465517 -66051520 + B4 SINE B4 80 193 -99 1 1221 715 197 51 7 chr6 83465517 83465617 -66051420 + B1_Mur2 SINE Alu 6 112 -37 1 1221 249 83 0 0 chr6 83465617 83465653 -66051384 + (CAGC)n Simple_repeat Simple_repeat 4 39 0 1 1221 370 316 34 75 chr6 83465653 83465683 -66051354 + B4 SINE B4 194 220 -72 1 1221 188 88 0 56 chr6 83465690 83465726 -66051311 + (GGAAA)n Simple_repeat Simple_repeat 1 34 0 1 1221 388 312 203 0 chr6 83465747 83465875 -66051162 - B3A SINE B2 -16 182 29 1 1221 396 0 0 0 chr6 83465875 83465919 -66051118 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1221 306 0 0 0 chr6 83465919 83465952 -66051085 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1221 485 212 35 17 chr6 83466489 83466604 -66050433 + PB1D7 SINE Alu 4 120 0 1 1221 342 226 62 54 chr6 83466786 83466898 -66050139 - L1MB8 LINE L1 -7 6171 6059 1 1221 439 322 31 69 chr6 83466904 83467064 -66049973 - ID_B1 SINE B4 -33 191 38 1 1221 626 275 92 10 chr6 83467184 83467379 -66049658 - B3 SINE B2 -1 215 5 1 1221 794 263 23 6 chr6 83467658 83467834 -66049203 - B3A SINE B2 -7 191 13 1 1221 638 140 9 0 chr6 83467843 83467957 -66049080 + (TTTC)n Simple_repeat Simple_repeat 1 115 0 1 1221 287 294 131 25 chr6 83467957 83468079 -66048958 - ID_B1 SINE B4 0 224 90 1 1221 548 209 118 0 chr6 83467970 83468080 -66048957 - B1_Mus1 SINE Alu -17 131 9 1 1221 1538 217 218 32 chr6 83468371 83468630 -66048407 + RLTR40 LTR ERVK 19 282 -535 1 1221 279 0 0 0 chr6 83468630 83468661 -66048376 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1221 1538 217 218 32 chr6 83468661 83468704 -66048333 + RLTR40 LTR ERVK 283 356 -461 1 1221 2436 116 34 10 chr6 83468704 83469089 -66047948 + ORR1B1 LTR MaLR 1 394 0 1 1221 1538 217 218 32 chr6 83469089 83469322 -66047715 + RLTR40 LTR ERVK 357 654 -163 1 1221 255 107 71 0 chr6 83469323 83469407 -66047630 + (CA)n Simple_repeat Simple_repeat 1 90 0 1 1221 463 174 109 120 chr6 83469420 83469603 -66047434 + RLTR40 LTR ERVK 570 750 -67 1 1221 258 106 0 0 chr6 83470928 83470975 -66046062 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1221 189 0 0 0 chr6 83471115 83471136 -66045901 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1221 1112 42 7 0 chr6 83471163 83471306 -66045731 - L1Md_A LINE L1 -2 6580 6437 1 1221 401 207 137 153 chr6 83471328 83471419 -66045618 - B3A SINE B2 -66 132 43 1 1221 1685 16 0 25 chr6 83471419 83471616 -66045421 - B2_Mm1a SINE B2 0 193 2 1 1221 401 207 137 153 chr6 83471616 83471655 -66045382 - B3A SINE B2 -156 42 4 1 1221 483 234 172 30 chr6 83472140 83472338 -66044699 + RLTR42-int LTR ERVK 1173 1398 -4124 1 1221 294 305 21 22 chr6 83473482 83473634 -66043403 + LTR33A_ LTR ERVL 27 190 -341 1 1221 382 283 193 0 chr6 83473931 83474076 -66042961 - MER20 DNA MER1_type 0 219 47 1 1221 227 170 38 0 chr6 83474078 83474131 -66042906 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 1 1221 27 49 0 0 chr6 83474824 83474865 -66042172 + AT_rich Low_complexity Low_complexity 1 41 0 1 1221 876 131 0 0 chr6 83474870 83475000 -66042037 - B1_Mur2 SINE Alu -8 141 12 1 1221 298 262 151 113 chr6 83475040 83475077 -66041960 - B2_Mm2 SINE B2 -3 192 162 1 1221 351 44 0 0 chr6 83475077 83475122 -66041915 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1221 555 217 154 8 chr6 83475122 83475269 -66041768 - B3A SINE B2 -34 161 1 1 1221 458 248 0 87 chr6 83475805 83475920 -66041117 - PB1D7 SINE Alu -2 118 14 1 1221 468 0 0 0 chr6 83477176 83477228 -66039809 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1221 2234 144 68 63 chr6 83477544 83478003 -66039034 - RMER4A LTR ERVK 0 466 6 1 1221 894 272 99 54 chr6 83478094 83478467 -66038570 + MLT1B LTR MaLR 1 390 0 1 1221 775 160 112 51 chr6 83478468 83478646 -66038391 - B3 SINE B2 0 216 28 1 1221 742 188 16 0 chr6 83478663 83478791 -66038246 - B1_Mur1 SINE Alu -15 134 5 1 1221 303 93 0 0 chr6 83478966 83479009 -66038028 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1221 355 239 101 12 chr6 83479095 83479264 -66037773 + RLTR21 LTR ERVK 1078 1261 -311 1 1221 643 302 25 6 chr6 83479271 83479434 -66037603 - B4 SINE B4 -4 288 123 1 1221 1158 153 33 28 chr6 83479585 83479800 -66037237 + B3 SINE B2 1 216 0 1 1221 547 193 41 32 chr6 83479866 83479989 -66037048 - RSINE1 SINE B4 -28 137 14 1 1221 1050 107 0 0 chr6 83480204 83480532 -66036505 + (CA)n Simple_repeat Simple_repeat 1 328 0 1 1221 391 207 153 0 chr6 83480540 83480637 -66036400 - B1F SINE Alu -6 114 3 1 1221 269 248 83 37 chr6 83480637 83480665 -66036372 + YREP_Mm Unknown Unknown 308 340 -1472 1 1221 986 219 75 0 chr6 83480669 83480870 -66036167 + B3 SINE B2 1 216 0 1 1221 1030 61 0 0 chr6 83480907 83481039 -66035998 + B1_Mm SINE Alu 9 140 -7 1 1221 243 0 0 0 chr6 83481071 83481098 -66035939 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1221 693 207 0 0 chr6 83481162 83481610 -66035427 + GA-rich Low_complexity Low_complexity 1 448 0 1 1221 435 174 66 0 chr6 83481573 83481740 -66035297 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 1 1221 1147 196 9 14 chr6 83482298 83482515 -66034522 + B3 SINE B2 1 216 0 1 1221 843 261 28 39 chr6 83482681 83482964 -66034073 + B4A SINE B4 3 282 -10 1 1221 330 298 19 0 chr6 83482980 83483084 -66033953 + (CA)n Simple_repeat Simple_repeat 1 106 0 1 1221 335 254 64 0 chr6 83483102 83483212 -66033825 + MER58B DNA MER1_type 71 187 -154 1 1221 377 264 33 0 chr6 83483219 83483310 -66033727 - ID_B1 SINE B4 -32 192 99 1 1221 235 360 101 2 chr6 83483296 83483480 -66033557 + MER58B DNA MER1_type 142 340 -1 1 1221 360 303 77 73 chr6 83484190 83484292 -66032745 + ID_B1 SINE B4 7 200 -92 1 1221 660 107 34 19 chr6 83484292 83484416 -66032621 + B1_Mur1 SINE Alu 11 144 -5 1 1221 360 303 77 73 chr6 83484416 83484437 -66032600 + ID_B1 SINE B4 201 243 -49 1 1221 408 267 13 100 chr6 83484485 83484635 -66032402 - ID_B1 SINE B4 0 224 88 1 1221 306 0 0 0 chr6 83485293 83485327 -66031710 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1221 693 248 0 7 chr6 83485390 83485532 -66031505 - B1F SINE Alu -1 148 8 1 1221 184 291 98 37 chr6 83485540 83485622 -66031415 + MIR SINE MIR 83 169 -93 1 1221 576 0 0 0 chr6 83487213 83487277 -66029760 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1221 285 171 13 0 chr6 83487381 83487457 -66029580 + Lx9 LINE L1 7564 7640 -4 1 1221 222 194 452 0 chr6 83487493 83487555 -66029482 - PB1D10 SINE Alu -11 106 17 1 1221 408 261 96 15 chr6 83488255 83488391 -66028646 - RSINE1 SINE B4 -2 163 17 1 1221 933 248 225 0 chr6 83488674 83488976 -66028061 - ORR1D2 LTR MaLR 0 370 1 1 1221 22 35 0 0 chr6 83489013 83489042 -66027995 + AT_rich Low_complexity Low_complexity 1 29 0 1 1221 438 20 0 0 chr6 83489046 83489097 -66027940 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1221 921 202 46 5 chr6 83489269 83489463 -66027574 + B3 SINE B2 2 203 -13 1 1221 554 239 22 51 chr6 83489701 83489838 -66027199 - ID_B1 SINE B4 -6 218 86 1 1221 315 0 0 0 chr6 83489892 83489927 -66027110 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1221 297 185 0 0 chr6 83490084 83490149 -66026888 + G-rich Low_complexity Low_complexity 6 70 0 1 1221 776 213 21 6 chr6 83490435 83490615 -66026422 + B3A SINE B2 2 189 -27 1 1221 207 295 0 82 chr6 83490756 83490841 -66026196 + L2c LINE L2 3292 3369 -18 1 1221 496 322 102 17 chr6 83491100 83491277 -66025760 + MLT1K LTR MaLR 152 343 -252 1 1221 233 222 93 0 chr6 83491727 83491781 -66025256 - PB1D7 SINE Alu -59 61 3 1 1221 812 292 19 9 chr6 83492569 83492783 -66024254 + B3 SINE B2 1 216 0 1 1222 306 0 0 0 chr6 83493593 83493627 -66023410 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 1222 250 354 80 66 chr6 83493749 83493784 -66023253 - B3 SINE B2 0 216 2 1 1222 755 251 0 79 chr6 83493784 83493961 -66023076 - RSINE1 SINE B4 0 165 3 1 1222 287 281 219 0 chr6 83494094 83494208 -66022829 - B1F1 SINE Alu -3 146 8 1 1222 424 298 68 8 chr6 83494156 83494288 -66022749 - ID_B1 SINE B4 -83 141 2 1 1222 2884 305 98 37 chr6 83494305 83494639 -66022398 + Lx9 LINE L1 5852 6205 -1439 1 1222 645 224 14 56 chr6 83494639 83494781 -66022256 + B1_Mur1 SINE Alu 2 137 -12 1 1222 483 18 0 0 chr6 83494784 83494840 -66022197 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1222 2884 305 98 37 chr6 83494840 83496164 -66020873 + Lx9 LINE L1 6206 7616 -28 1 1222 195 42 0 0 chr6 83496335 83496359 -66020678 + (CATATA)n Simple_repeat Simple_repeat 5 28 0 1 1222 347 219 33 38 chr6 83496863 83496892 -66020145 - ID4_ SINE ID -57 95 7 1 1222 354 183 0 0 chr6 83496892 83496952 -66020085 - tRNA-Ala-GCY_ tRNA tRNA -12 63 4 1 1222 340 314 102 0 chr6 83496960 83497078 -66019959 - MIR SINE MIR -69 193 64 1 1222 2467 126 15 15 chr6 83497401 83497795 -66019242 + ORR1B1 LTR MaLR 1 394 0 1 1222 1206 54 14 0 chr6 83497978 83498125 -66018912 + B1_Mur4 SINE Alu 2 150 0 1 1222 697 296 3 16 chr6 83498147 83498353 -66018684 - B3 SINE B2 -3 192 1 1 1222 340 248 43 43 chr6 83498353 83498492 -66018545 + L1M4 LINE L1 1302 1446 -5096 1 1222 195 229 82 20 chr6 83498556 83498605 -66018432 + L4 LINE RTE 1773 1824 -205 1 1222 311 177 60 48 chr6 83500613 83500696 -66016341 + PB1D9 SINE Alu 26 109 -11 1 1222 479 187 13 0 chr6 83500713 83500788 -66016249 + ID4 SINE ID 5 80 -3 2 1222 186 167 0 0 chr6 83500788 83500824 -66016213 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3 1222 222 62 0 0 chr6 83501457 83501489 -66015548 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1222 534 276 214 4 chr6 83501586 83501815 -66015222 + B4A SINE B4 1 277 -15 5 1222 1200 219 73 56 chr6 83502343 83502701 -66014336 + RMER13A LTR ERVK 1 364 -496 6 1222 246 288 39 52 chr6 83502828 83502905 -66014132 + RMER13A LTR ERVK 583 658 -202 6 1222 644 201 57 7 chr6 83503036 83503176 -66013861 - B1F SINE Alu 0 149 3 7 1222 233 261 50 112 chr6 83503277 83503437 -66013600 + RLTR22_Mus LTR ERVK 730 879 -929 8 1222 518 242 86 80 chr6 83503545 83503707 -66013330 - RSINE1 SINE B4 0 165 3 9 1222 634 230 117 6 chr6 83503995 83504157 -66012880 - B3A SINE B2 -18 180 1 1 1222 295 225 56 0 chr6 83504840 83504911 -66012126 - PB1D10 SINE Alu -20 97 23 1 1222 493 300 50 0 chr6 83506995 83507135 -66009902 - B1F SINE Alu -1 148 2 1 1222 428 354 43 25 chr6 83507151 83507329 -66009708 - B4 SINE B4 -4 288 100 1 1222 261 244 283 19 chr6 83507690 83507849 -66009188 + MLT-int LTR MaLR 1399 1599 -136 1 1222 298 263 17 35 chr6 83508055 83508168 -66008869 + B4 SINE B4 1 113 -179 1 1222 4096 145 0 12 chr6 83508800 83509462 -66007575 - Lx2 LINE L1 -445 5438 4785 1 1222 9264 100 50 8 chr6 83509458 83510946 -66006091 + Lx2 LINE L1 5445 6991 -6 1 1222 180 0 0 0 chr6 83510946 83510966 -66006071 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1222 356 73 36 0 chr6 83511049 83511104 -66005933 + (GAAAA)n Simple_repeat Simple_repeat 3 59 0 1 1222 1399 69 21 0 chr6 83512150 83512339 -66004698 - B2_Mm1t SINE B2 0 193 1 1 1222 877 279 50 142 chr6 83512469 83512730 -66004307 + MTE2a LTR MaLR 1 208 -171 2 1222 720 230 7 7 chr6 83512730 83512883 -66004154 - RSINE1 SINE B4 -11 154 2 2 1222 877 279 50 142 chr6 83512883 83513038 -66003999 + MTE2a LTR MaLR 209 379 0 2 1222 456 277 0 0 chr6 83514487 83514588 -66002449 + RSINE1 SINE B4 11 111 -54 2 1222 1044 251 199 11 chr6 83514901 83515252 -66001785 + MTD LTR MaLR 1 417 -2 2 1222 271 298 60 0 chr6 83515387 83515471 -66001566 - RMER30 DNA MER1_type 0 202 114 2 1222 198 103 0 0 chr6 83515667 83515696 -66001341 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2 1222 452 355 97 54 chr6 83515904 83516366 -66000671 + L1M5 LINE L1 5284 5765 -359 2 1222 202 248 142 67 chr6 83516399 83516544 -66000493 - L2b LINE L2 0 3426 3257 2 1222 1066 173 39 19 chr6 83516544 83516750 -66000287 + B3 SINE B2 1 210 -6 2 1222 198 319 186 64 chr6 83516750 83516932 -66000105 - L2b LINE L2 -170 3256 3059 2 1222 278 50 0 24 chr6 83517110 83517151 -65999886 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1222 591 222 73 7 chr6 83517168 83517304 -65999733 - RSINE1 SINE B4 -17 148 4 3 1222 584 237 89 0 chr6 83518472 83518607 -65998430 + B1_Mus2 SINE Alu 1 147 0 3 1222 244 310 0 0 chr6 83518743 83518801 -65998236 + MER58D DNA MER1_type 1 58 -328 3 1222 1141 68 7 0 chr6 83518844 83518991 -65998046 - B1_Mus1 SINE Alu 0 148 1 3 1222 334 257 26 87 chr6 83519033 83519148 -65997889 + MER20 DNA MER1_type 58 165 -54 3 1222 417 309 42 79 chr6 83520598 83520618 -65996419 + B4 SINE B4 65 78 -214 3 1222 785 190 13 26 chr6 83520618 83520769 -65996268 + B1_Mur3 SINE Alu 1 149 0 3 1222 337 90 11 43 chr6 83520897 83520990 -65996047 + (CAAAA)n Simple_repeat Simple_repeat 2 91 0 3 1222 1724 139 73 62 chr6 83522658 83523026 -65994011 - Lx4B LINE L1 0 7058 6687 3 1222 342 0 0 0 chr6 83523233 83523271 -65993766 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1222 3529 20 2 0 chr6 83523279 83523674 -65993363 + MTA_Mm LTR MaLR 1 396 0 4 1222 476 292 38 25 chr6 83523678 83523836 -65993201 - RSINE1 SINE B4 -3 162 3 4 1222 902 145 104 6 chr6 83525209 83525382 -65991655 - B2_Mm2 SINE B2 -5 190 1 4 1222 469 252 7 67 chr6 83525652 83525801 -65991236 - B1F SINE Alu -9 140 1 4 1222 311 281 69 41 chr6 83526190 83526273 -65990764 - L1MEe LINE L1 -4000 854 769 4 1222 1264 62 11 6 chr6 83526273 83526452 -65990585 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1222 311 281 69 41 chr6 83526452 83526513 -65990524 - L1MEe LINE L1 -4086 768 706 4 1222 216 0 0 0 chr6 83526513 83526537 -65990500 + (TTTC)n Simple_repeat Simple_repeat 4 27 0 4 1222 1144 83 0 0 chr6 83526537 83526681 -65990356 - B1_Mus1 SINE Alu 0 148 5 4 1222 396 228 13 0 chr6 83526800 83526879 -65990158 - ID4 SINE ID -2 81 2 4 1222 270 0 0 0 chr6 83526893 83526923 -65990114 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 4 1222 732 143 8 0 chr6 83526923 83527034 -65990003 - B1_Mus2 SINE Alu -8 139 28 5 1222 317 317 75 72 chr6 83527157 83527422 -65989615 - ORR1E LTR MaLR -15 344 79 5 1222 207 0 0 0 chr6 83527471 83527494 -65989543 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1222 302 257 26 51 chr6 83528653 83528731 -65988306 + ID_B1 SINE B4 143 218 -6 5 1222 891 246 69 6 chr6 83529104 83529423 -65987614 - L1_Mur3 LINE L1 -1597 4283 3945 5 1222 274 320 77 0 chr6 83529563 83529744 -65987293 + Lx8 LINE L1 6891 7085 -388 5 1222 237 208 0 0 chr6 83530375 83530423 -65986614 + ID SINE ID 25 72 -152 5 1222 277 326 43 0 chr6 83530556 83530648 -65986389 - PB1 SINE Alu -8 119 24 5 1222 493 226 100 21 chr6 83531285 83531425 -65985612 - ID_B1 SINE B4 -2 222 72 5 1222 432 258 360 20 chr6 83531892 83532095 -65984942 + B4 SINE B4 1 272 -20 5 1222 2012 281 34 5 chr6 83532386 83532973 -65984064 + Lx8 LINE L1 6232 6835 -638 6 1222 743 269 172 6 chr6 83533009 83533323 -65983714 + Lx8 LINE L1 7019 7384 -89 6 1222 257 217 0 0 chr6 83533459 83533505 -65983532 - tRNA-Ala-GCY_ tRNA tRNA -9 66 21 6 1222 375 269 16 25 chr6 83534032 83534154 -65982883 + CT-rich Low_complexity Low_complexity 2 122 0 6 1222 181 139 0 44 chr6 83534276 83534321 -65982716 + CT-rich Low_complexity Low_complexity 3 45 0 6 1222 22 0 0 0 chr6 83534530 83534552 -65982485 + AT_rich Low_complexity Low_complexity 1 22 0 6 1222 1195 75 0 0 chr6 83536312 83536459 -65980578 - B1_Mus2 SINE Alu 0 147 1 6 1222 303 289 77 0 chr6 83536850 83536954 -65980083 - PB1D9 SINE Alu 0 120 9 6 1222 609 337 54 29 chr6 83538918 83539196 -65977841 - B4 SINE B4 -5 287 3 6 1222 3869 196 62 72 chr6 83539263 83540176 -65976861 + RMER13B LTR ERVK 5 908 0 6 1222 556 289 54 46 chr6 83541898 83542137 -65974900 - 7SK RNA RNA -90 241 1 6 1222 281 308 32 77 chr6 83543031 83543186 -65973851 - B1F SINE Alu -1 148 1 7 1222 22 0 0 0 chr6 83543409 83543431 -65973606 + AT_rich Low_complexity Low_complexity 1 22 0 7 1222 250 282 126 17 chr6 83543781 83543900 -65973137 - 7SK RNA RNA -91 240 109 7 1222 314 351 29 15 chr6 83543891 83544027 -65973010 - 7SK RNA RNA -121 210 73 7 1222 634 303 20 10 chr6 83545091 83545291 -65971746 + B3 SINE B2 3 204 -12 7 1222 337 203 0 0 chr6 83545385 83545449 -65971588 - ID_B1 SINE B4 -42 182 119 7 1222 2657 64 0 0 chr6 83545505 83545832 -65971205 + ORR1A2 LTR MaLR 1 327 0 7 1222 276 163 0 58 chr6 83545935 83545987 -65971050 - B1F2 SINE Alu -55 94 46 7 1222 326 300 45 18 chr6 83546278 83546390 -65970647 + ID_B1 SINE B4 1 115 -109 7 1222 1193 75 0 0 chr6 83546392 83546539 -65970498 + B1_Mus2 SINE Alu 1 147 0 7 1222 338 0 24 0 chr6 83546571 83546613 -65970424 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 1222 395 219 0 0 chr6 83546616 83546689 -65970348 + ID_B1 SINE B4 110 182 -42 7 1222 195 100 0 0 chr6 83546709 83546739 -65970298 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 8 1222 321 309 47 14 chr6 83547177 83547387 -65969650 - L1_Mur3 LINE L1 -1833 4313 4101 8 1222 376 245 20 0 chr6 83547390 83547492 -65969545 - L1_Mur3 LINE L1 -2064 3816 3713 8 1222 201 207 35 0 chr6 83548524 83548611 -65968426 + (TA)n Simple_repeat Simple_repeat 2 91 0 8 1222 1713 151 7 11 chr6 83550244 83550526 -65966511 + Lx7 LINE L1 2355 2635 -3245 8 1222 351 0 0 0 chr6 83550526 83550565 -65966472 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1222 1215 102 0 0 chr6 83550569 83550746 -65966291 + (TTC)n Simple_repeat Simple_repeat 2 178 0 8 1222 7830 151 88 15 chr6 83551746 83551809 -65965228 + Lx7 LINE L1 2657 2733 -3147 8 1222 252 0 0 0 chr6 83551809 83551837 -65965200 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 8 1222 7830 151 88 15 chr6 83551837 83552501 -65964536 + Lx7 LINE L1 2734 3467 -2413 8 1222 378 61 0 0 chr6 83552501 83552550 -65964487 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1222 7830 151 88 15 chr6 83552550 83553341 -65963696 + Lx7 LINE L1 3468 4297 -1583 8 1222 3519 23 2 0 chr6 83553341 83553736 -65963301 - MTA_Mm LTR MaLR 0 396 1 8 1222 7830 151 88 15 chr6 83553736 83553790 -65963247 + Lx7 LINE L1 4298 4344 -1536 8 1222 792 183 0 0 chr6 83553788 83553919 -65963118 + Lx7 LINE L1 5439 5569 -311 8 1222 5755 185 45 21 chr6 83553919 83555034 -65962003 + Lx5 LINE L1 5897 7037 -13 9 1222 183 80 0 0 chr6 83555035 83555060 -65961977 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 9 1222 4589 171 35 20 chr6 83555064 83555343 -65961694 + Lx7 LINE L1 5559 5798 -1898 8 1222 1396 34 0 11 chr6 83555343 83555523 -65961514 + (GAA)n Simple_repeat Simple_repeat 3 180 0 9 1222 4589 208 45 62 chr6 83555523 83556167 -65960870 + Lx7 LINE L1 5799 6478 -1218 8 1222 375 78 0 0 chr6 83556167 83556218 -65960819 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1222 4589 208 45 62 chr6 83556218 83556419 -65960618 + Lx7 LINE L1 6479 6668 -1028 8 1222 2800 161 50 18 chr6 83556419 83556920 -65960117 + RLTR12B LTR ERVK 1 517 -11 9 1222 3577 199 46 134 chr6 83556937 83558091 -65958946 + Lx7 LINE L1 6664 7678 -18 8 1222 2118 78 21 0 chr6 83558124 83558407 -65958630 + ORR1A2 LTR MaLR 1 289 -38 9 1222 841 120 0 16 chr6 83558407 83558534 -65958503 + B1_Mus1 SINE Alu 3 127 -21 9 1222 410 91 0 0 chr6 83558532 83558587 -65958450 + ORR1A2 LTR MaLR 272 326 0 9 1222 265 241 231 42 chr6 83558600 83558743 -65958294 - L1_Mur3 LINE L1 -2014 3866 3697 9 1222 180 0 0 0 chr6 83558743 83558763 -65958274 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 1222 666 211 54 8 chr6 83558767 83558896 -65958141 - B1_Mur3 SINE Alu -13 136 2 9 1222 2332 196 76 63 chr6 83559029 83559580 -65957457 + RMER15 LTR ERVL 3 560 -15 1 1222 373 181 0 0 chr6 83559595 83559667 -65957370 + RMER15-int LTR ERVL 1 72 -4927 1 1222 233 267 109 10 chr6 83559717 83559851 -65957186 - RMER21A LTR ERV1 -258 689 642 1 1222 1153 302 49 0 chr6 83560006 83560374 -65956663 + RMER15-int LTR ERVL 94 479 -4520 1 1222 6940 268 53 19 chr6 83560538 83562625 -65954412 + RMER15-int LTR ERVL 811 2967 -2032 1 1222 298 147 0 148 chr6 83562655 83562743 -65954294 + RMER15-int LTR ERVL 4172 4246 -753 1 1222 2003 247 12 10 chr6 83562799 83563310 -65953727 + RMER15-int LTR ERVL 4259 4770 -229 1 1222 279 277 0 0 chr6 83563321 83563386 -65953651 + RMER15-int LTR ERVL 4819 4883 -116 1 1222 216 143 0 0 chr6 83563387 83563429 -65953608 + (TCC)n Simple_repeat Simple_repeat 2 43 0 1 1222 1539 230 67 39 chr6 83564299 83565257 -65951780 + RMER1A Other Other 1 532 -534 1 1222 2366 164 8 10 chr6 83565262 83565651 -65951386 + RMER1A Other Other 346 733 -297 1 1222 336 244 0 68 chr6 83565677 83565765 -65951272 + RLTR19C LTR ERVK 25 106 -400 1 1222 489 263 34 8 chr6 83565840 83565959 -65951078 + RLTR33 LTR ERVK 472 593 -85 1 1222 468 116 0 0 chr6 83566145 83566214 -65950823 + RMER1A Other Other 730 798 -232 1 1222 533 325 24 24 chr6 83566465 83566676 -65950361 + B4A SINE B4 2 212 -80 1 1222 438 333 27 22 chr6 83567937 83568121 -65948916 + RLTR18B LTR ERVK 320 504 -8 1 1222 334 261 21 11 chr6 83569215 83569308 -65947729 - PB1D7 SINE Alu 0 120 27 1 1222 403 344 68 54 chr6 83569696 83570081 -65946956 + MLT2B5 LTR ERVL 53 445 -109 1 1222 327 303 40 0 chr6 83570256 83570355 -65946682 - MLT-int LTR MaLR -462 1273 1171 1 1222 242 321 22 98 chr6 83570803 83570986 -65946051 - B4A SINE B4 -122 170 2 1 1222 3500 194 27 16 chr6 83572322 83573361 -65943676 - Lx6 LINE L1 -1237 6223 5163 1 1222 230 269 36 60 chr6 83573456 83573539 -65943498 - MTD LTR MaLR -20 399 319 1 1222 930 258 5 10 chr6 83573667 83573863 -65943174 + ID_B1 SINE B4 26 220 -4 1 1222 1047 192 103 12 chr6 83573879 83574077 -65942960 + RMER15 LTR ERVL 311 531 -44 1 1222 485 80 13 0 chr6 83574077 83574152 -65942885 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1222 1047 192 103 12 chr6 83574152 83574196 -65942841 + RMER15 LTR ERVL 532 575 0 1 1222 209 200 0 0 chr6 83574355 83574390 -65942647 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 1 1222 719 153 8 0 chr6 83574396 83574520 -65942517 - Lx7 LINE L1 -689 7007 6883 1 1222 4942 126 52 40 chr6 83574858 83575718 -65941319 + RMER21A LTR ERV1 3 873 -74 1 1222 859 253 94 40 chr6 83576130 83576364 -65940673 + RMER21B LTR ERV1 277 525 -317 1 1222 414 0 0 0 chr6 83576364 83576410 -65940627 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1222 859 253 94 40 chr6 83576410 83576451 -65940586 + RMER21B LTR ERV1 526 566 -276 1 1222 222 128 0 0 chr6 83578256 83578295 -65938742 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 1 1222 921 136 0 0 chr6 83578341 83578495 -65938542 + (TA)n Simple_repeat Simple_repeat 1 154 0 1 1222 203 125 25 0 chr6 83578618 83578658 -65938379 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 1 1222 421 204 21 70 chr6 83579255 83579397 -65937640 - MER20B DNA MER1_type -34 749 615 1 1222 180 0 0 0 chr6 83579416 83579436 -65937601 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1222 2703 108 17 15 chr6 83579597 83580003 -65937034 + MTB_Mm LTR MaLR 1 407 0 1 1222 416 214 85 23 chr6 83580107 83580236 -65936801 + B1F SINE Alu 7 143 -6 1 1222 619 314 55 67 chr6 83580271 83580524 -65936513 + B4A SINE B4 43 292 0 1 1222 414 355 30 54 chr6 83580949 83581244 -65935793 - B4A SINE B4 -3 289 2 1 1222 235 276 103 0 chr6 83581395 83581453 -65935584 + 4.5SRNA scRNA scRNA 25 88 -6 1 1222 341 217 0 16 chr6 83581404 83581465 -65935572 + PB1D10 SINE Alu 42 101 -16 1 1222 475 295 0 9 chr6 83581527 83581633 -65935404 + B4 SINE B4 185 289 -3 1 1222 284 315 58 23 chr6 83581656 83581828 -65935209 + (CATG)n Simple_repeat Simple_repeat 3 180 0 1 1222 284 200 0 32 chr6 83582696 83582758 -65934279 + PB1D10 SINE Alu 24 83 -34 1 1222 251 311 82 5 chr6 83582780 83582964 -65934073 + Lx8 LINE L1 6889 7086 -387 1 1222 333 0 0 0 chr6 83583432 83583469 -65933568 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1222 30 27 0 0 chr6 83583799 83583836 -65933201 + AT_rich Low_complexity Low_complexity 1 37 0 1 1222 263 311 0 0 chr6 83583846 83583907 -65933130 - PB1 SINE Alu -31 96 36 1 1222 499 226 100 21 chr6 83584557 83584697 -65932340 - ID_B1 SINE B4 -2 222 72 1 1222 512 317 89 19 chr6 83585143 83585413 -65931624 + B4 SINE B4 1 289 -3 1 1222 235 343 37 61 chr6 83585424 83585669 -65931368 - RMER12 LTR ERVK -334 988 750 1 1222 213 214 85 51 chr6 83586102 83586161 -65930876 + B3A SINE B2 11 71 -127 1 1222 329 145 0 16 chr6 83586711 83586774 -65930263 + (TGG)n Simple_repeat Simple_repeat 1 62 0 1 1222 548 169 0 0 chr6 83586786 83586875 -65930162 - B1_Mur4 SINE Alu 0 150 62 1 1222 311 288 106 64 chr6 83586961 83587102 -65929935 - B1_Mm SINE Alu 0 147 1 1 1222 305 248 260 34 chr6 83587380 83587526 -65929511 + B3A SINE B2 4 182 -16 1 1222 1405 261 52 39 chr6 83587840 83588323 -65928714 + Lx8 LINE L1 6980 7468 -5 1 1222 396 183 92 46 chr6 83588367 83588476 -65928561 + L1M5 LINE L1 3679 3792 -2354 1 1222 330 274 16 110 chr6 83588476 83588603 -65928434 + PB1D10 SINE Alu 1 115 -2 1 1222 6326 66 28 19 chr6 83588674 83589521 -65927516 - RLTR13A LTR ERVK 0 855 1 1 1222 1093 51 7 42 chr6 83589736 83589879 -65927158 + B1_Mus1 SINE Alu 2 139 -9 1 1222 592 200 14 0 chr6 83589951 83590091 -65926946 + CT-rich Low_complexity Low_complexity 3 144 0 1 1222 1169 88 0 0 chr6 83590093 83590241 -65926796 - B1_Mus1 SINE Alu 0 148 1 1 1222 441 0 0 0 chr6 83590286 83590335 -65926702 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1222 242 158 0 0 chr6 83590583 83590621 -65926416 + B1_Mus1 SINE Alu 2 39 -109 1 1222 5268 175 89 32 chr6 83590622 83591782 -65925255 - ORR1B1-int LTR MaLR -193 1316 91 1 1222 1635 134 75 4 chr6 83591782 83592046 -65924991 - ORR1B1 LTR MaLR -121 273 1 1 1222 1136 208 89 4 chr6 83592048 83592318 -65924719 + Lx7 LINE L1 6120 6412 -1284 1 1222 1430 280 46 52 chr6 83592446 83593272 -65923765 + RMER1B Other Other 3 482 -584 1 1222 3221 220 152 19 chr6 83593272 83594160 -65922877 + RMER1A Other Other 1 1006 -24 1 1222 186 43 0 0 chr6 83594160 83594183 -65922854 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1222 486 0 0 0 chr6 83594301 83594355 -65922682 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1222 1030 67 0 36 chr6 83594355 83594495 -65922542 - B1_Mus2 SINE Alu -11 136 2 1 1222 437 84 14 0 chr6 83595735 83595806 -65921231 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1222 755 233 7 27 chr6 83597410 83597560 -65919477 - RSINE1 SINE B4 -16 149 3 1 1222 204 241 36 18 chr6 83597646 83597701 -65919336 + MER5A DNA MER1_type 1 56 -133 1 1222 299 352 69 14 chr6 83597878 83598022 -65919015 + MER58B DNA MER1_type 178 329 -12 1 1222 697 299 95 14 chr6 83598025 83598235 -65918802 + B4A SINE B4 2 228 -64 1 1222 735 281 53 19 chr6 83598231 83598446 -65918591 + ID_B1 SINE B4 7 224 -68 1 1222 1109 66 29 3 chr6 83598446 83598755 -65918282 + (TAGA)n Simple_repeat Simple_repeat 1 317 0 1 1222 357 317 120 91 chr6 83598755 83598809 -65918228 + B4A SINE B4 225 288 -4 1 1222 214 292 45 15 chr6 83598872 83598938 -65918099 + MER5B DNA MER1_type 17 84 -94 1 1222 324 248 7 15 chr6 83599368 83599503 -65917534 + CT-rich Low_complexity Low_complexity 2 135 0 1 1222 693 193 0 0 chr6 83600747 83600861 -65916176 - ID_B1 SINE B4 -7 217 104 1 1222 3252 88 0 0 chr6 83601010 83601433 -65915604 - L1_Mus1 LINE L1 0 6567 6145 1 1222 4028 72 2 1 chr6 83601433 83602106 -65914931 + L1_Mus1 LINE L1 5447 6119 -448 1 1222 492 18 0 0 chr6 83602284 83602341 -65914696 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1222 1553 220 42 18 chr6 83603393 83603558 -65913479 + MTEa LTR MaLR 17 182 -197 1 1222 387 0 0 0 chr6 83603558 83603601 -65913436 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1222 1553 220 42 18 chr6 83603601 83603769 -65913268 + MTEa LTR MaLR 183 358 -21 1 1222 441 36 0 0 chr6 83603898 83603953 -65913084 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1222 258 302 45 39 chr6 83604161 83604316 -65912721 + L1MA10 LINE L1 6178 6333 -1 1 1222 767 289 62 5 chr6 83604328 83604537 -65912500 + ID_B1 SINE B4 1 221 -3 1 1222 196 254 65 78 chr6 83605664 83605741 -65911296 - MIRb SINE MIR -170 98 23 1 1222 892 281 88 42 chr6 83606368 83606628 -65910409 + B4A SINE B4 1 272 -20 1 1222 934 131 0 21 chr6 83606638 83606779 -65910258 + B1_Mur1 SINE Alu 11 148 -1 1 1222 633 301 12 12 chr6 83607153 83607232 -65909805 + ID SINE ID 2 80 -144 1 1222 249 311 90 45 chr6 83607232 83607343 -65909694 + PB1D10 SINE Alu 1 116 -1 1 1222 341 321 114 55 chr6 83607486 83607723 -65909314 + MER21B LTR ERV1 499 749 -114 1 1222 872 157 191 21 chr6 83607799 83607988 -65909049 - URR1B DNA MER1_type 0 225 5 1 1222 1808 193 47 16 chr6 83608154 83608384 -65908653 + ORR1D1 LTR MaLR 1 228 -146 1 1222 204 40 0 0 chr6 83608384 83608409 -65908628 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 1 1222 1808 193 47 16 chr6 83608409 83608541 -65908496 + ORR1D1 LTR MaLR 229 374 0 1 1222 609 186 12 160 chr6 83608541 83608713 -65908324 + B1F SINE Alu 18 311 0 1 1222 213 231 0 0 chr6 83610082 83610121 -65906916 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 1 1222 395 333 102 9 chr6 83610621 83610836 -65906201 - LTR53 LTR ERVL -93 426 192 1 1222 328 289 19 0 chr6 83611229 83611333 -65905704 - MMERGLN-int LTR ERV1 -355 7201 7096 1 1222 3316 162 172 80 chr6 83611948 83612774 -65904263 + RMER19B LTR ERVK 1 902 0 1 1222 270 274 61 25 chr6 83613716 83613837 -65903200 - RLTR14-int LTR ERV1 -1446 3871 3763 1 1222 3909 178 62 46 chr6 83613936 83614768 -65902269 + RMER21A LTR ERV1 94 939 -8 1 1222 436 395 54 25 chr6 83614793 83615499 -65901538 - MMERGLN-int LTR ERV1 -4049 3729 3004 1 1222 463 315 51 54 chr6 83615967 83616359 -65900678 - MMERGLN-int LTR ERV1 -5137 2419 2029 1 1222 342 289 49 7 chr6 83616871 83617074 -65899963 - MMERGLN-int LTR ERV1 -6283 1495 1299 1 1222 819 135 0 0 chr6 83617330 83617463 -65899574 + (TCC)n Simple_repeat Simple_repeat 2 134 0 2 1222 351 308 35 180 chr6 83618463 83618657 -65898380 - RLTR12B LTR ERVK -239 289 112 2 1222 1015 65 51 0 chr6 83618657 83618795 -65898242 + B1_Mus1 SINE Alu 4 148 0 2 1222 351 308 35 180 chr6 83618795 83618833 -65898204 - RLTR12B LTR ERVK -417 111 99 2 1222 1150 73 27 38 chr6 83618833 83619019 -65898018 + B2_Mm2 SINE B2 1 184 -11 2 1222 225 0 0 0 chr6 83619019 83619044 -65897993 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1222 351 308 35 180 chr6 83619044 83619126 -65897911 - RLTR12B LTR ERVK -430 98 20 2 1222 316 310 46 60 chr6 83619626 83619654 -65897383 + B4 SINE B4 63 146 -146 2 1222 521 221 19 0 chr6 83619654 83619758 -65897279 + B1_Mur2 SINE Alu 1 106 -43 2 1222 316 310 46 60 chr6 83619758 83619777 -65897260 + B4 SINE B4 147 211 -81 2 1222 297 75 0 0 chr6 83619852 83619892 -65897145 + (CCCCCT)n Simple_repeat Simple_repeat 5 44 0 2 1222 644 282 72 0 chr6 83620731 83620926 -65896111 - ID_B1 SINE B4 -13 211 3 2 1222 634 250 14 0 chr6 83620979 83621123 -65895914 + B3A SINE B2 2 147 -51 2 1222 439 60 30 0 chr6 83621123 83621190 -65895847 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1222 424 290 21 115 chr6 83621190 83621236 -65895801 + B2_Mm1a SINE B2 132 174 -19 2 1222 237 266 82 41 chr6 83621247 83621345 -65895692 - L1MA6 LINE L1 -29 6271 6170 2 1222 772 245 16 10 chr6 83621866 83622060 -65894977 + ID_B1 SINE B4 23 217 -7 2 1222 573 263 51 6 chr6 83622072 83622229 -65894808 + RSINE1 SINE B4 2 165 0 2 1222 716 53 0 0 chr6 83622361 83622455 -65894582 + B2_Mm1t SINE B2 1 94 -99 2 1222 494 267 0 0 chr6 83623136 83623252 -65893785 + PB1D10 SINE Alu 2 117 0 2 1222 281 389 116 25 chr6 83623576 83623853 -65893184 + MLT1I LTR MaLR 37 338 -73 2 152 231 338 13 13 chr6 83623869 83623947 -65893090 + B4A SINE B4 6 83 -209 2 1223 380 91 0 15 chr6 83624075 83624142 -65892895 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1223 291 185 77 0 chr6 83624757 83624822 -65892215 + RLTR42-int LTR ERVK 1272 1341 -4181 2 1223 226 183 67 0 chr6 83625087 83625147 -65891890 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 2 1223 1417 74 0 5 chr6 83625159 83625349 -65891688 - B2_Mm2 SINE B2 -6 189 1 2 1223 575 223 82 68 chr6 83626517 83626724 -65890313 + B3 SINE B2 2 211 -5 2 1223 547 189 45 0 chr6 83626766 83626877 -65890160 + B1_Mur1 SINE Alu 5 120 -29 2 1223 808 248 52 5 chr6 83628538 83628749 -65888288 + B4A SINE B4 6 226 -66 2 1223 212 232 35 18 chr6 83628897 83628954 -65888083 + GA-rich Low_complexity Low_complexity 6 63 0 2 1223 207 335 46 7 chr6 83628963 83628974 -65888063 + (TGGA)n Simple_repeat Simple_repeat 3 13 0 2 1223 786 97 0 0 chr6 83628974 83629087 -65887950 + (GGGA)n Simple_repeat Simple_repeat 1 113 0 2 1223 342 264 36 5 chr6 83629087 83629265 -65887772 + (TGGA)n Simple_repeat Simple_repeat 1 183 0 2 1223 1434 43 27 0 chr6 83629268 83629455 -65887582 + B2_Mm1t SINE B2 2 193 0 2 1223 189 189 54 0 chr6 83629473 83629547 -65887490 + (TGGA)n Simple_repeat Simple_repeat 3 80 0 2 1223 758 230 30 55 chr6 83629927 83630176 -65886861 + RLTR18 LTR ERVK 417 616 0 2 1223 1085 270 33 77 chr6 83630534 83630923 -65886114 + MTEa LTR MaLR 6 377 -2 2 1223 661 272 5 20 chr6 83631201 83631396 -65885641 + B3A SINE B2 3 194 -4 2 1223 289 249 72 27 chr6 83631406 83631533 -65885504 + L1MA4A LINE L1 5775 5929 -374 2 1223 205 189 0 0 chr6 83631552 83631589 -65885448 + (CATA)n Simple_repeat Simple_repeat 4 40 0 2 1223 240 111 0 0 chr6 83631776 83631812 -65885225 + (GAA)n Simple_repeat Simple_repeat 2 37 0 2 1223 452 182 152 0 chr6 83632205 83632304 -65884733 + PB1D9 SINE Alu 2 115 -5 2 1223 397 122 27 0 chr6 83632304 83632378 -65884659 + (GGA)n Simple_repeat Simple_repeat 3 78 0 2 1223 1527 32 16 0 chr6 83632399 83632588 -65884449 + B2_Mm2 SINE B2 2 193 -2 2 1223 269 0 56 0 chr6 83632589 83632625 -65884412 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 1223 1112 55 0 7 chr6 83632643 83632791 -65884246 + B1_Mus2 SINE Alu 1 147 0 2 1223 25 0 0 0 chr6 83633187 83633212 -65883825 + AT_rich Low_complexity Low_complexity 1 25 0 2 1223 792 203 152 0 chr6 83633418 83633595 -65883442 + ID_B1 SINE B4 6 209 -15 2 1223 311 185 45 18 chr6 83633628 83633738 -65883299 + GA-rich Low_complexity Low_complexity 2 114 0 2 1223 1474 103 0 29 chr6 83634370 83634611 -65882426 + Lx LINE L1 6421 6654 0 2 1223 468 0 0 0 chr6 83634627 83634679 -65882358 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1223 250 196 0 0 chr6 83634699 83634745 -65882292 - B4A SINE B4 -60 232 187 2 1223 222 289 85 43 chr6 83634784 83634878 -65882159 - B4A SINE B4 -194 98 1 2 1223 704 155 23 23 chr6 83634918 83635050 -65881987 - B1_Mur2 SINE Alu 0 149 18 2 1223 302 213 19 113 chr6 83634956 83635062 -65881975 - MT2B LTR ERVL -337 264 169 2 1223 489 287 103 9 chr6 83636103 83636335 -65880702 + MT2A LTR ERVL 203 456 -77 2 1223 1147 172 33 23 chr6 83636545 83636759 -65880278 + B3 SINE B2 1 216 0 2 1223 22 0 0 0 chr6 83637205 83637227 -65879810 + AT_rich Low_complexity Low_complexity 1 22 0 2 1223 394 123 0 0 chr6 83637245 83637310 -65879727 - MTE2a LTR MaLR 0 379 315 2 1223 351 263 140 0 chr6 83637396 83637510 -65879527 + RSINE1 SINE B4 5 134 -31 2 1223 27 62 0 0 chr6 83637518 83637566 -65879471 + AT_rich Low_complexity Low_complexity 1 48 0 2 1223 851 288 0 9 chr6 83638275 83638485 -65878552 + B3 SINE B2 5 212 -4 2 1223 931 270 8 12 chr6 83638509 83638749 -65878288 + Lx7 LINE L1 5590 5828 -1868 2 1223 238 265 47 35 chr6 83640156 83640242 -65876795 - L1MEc LINE L1 -5776 624 538 2 1223 464 234 37 18 chr6 83640337 83640446 -65876591 + PB1D7 SINE Alu 6 116 -4 2 1223 222 37 0 0 chr6 83640610 83640637 -65876400 + (G)n Simple_repeat Simple_repeat 1 27 0 2 1223 827 97 7 0 chr6 83640639 83640784 -65876253 + (GA)n Simple_repeat Simple_repeat 1 146 0 2 1223 360 0 0 0 chr6 83641156 83641196 -65875841 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1223 1266 201 281 42 chr6 83641449 83641855 -65875182 + RLTR18B LTR ERVK 1 503 -9 2 1223 342 45 0 0 chr6 83641855 83641899 -65875138 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1223 859 182 12 0 chr6 83642189 83642436 -65874601 + CT-rich Low_complexity Low_complexity 1 249 0 2 1223 237 121 0 0 chr6 83642436 83642469 -65874568 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1223 941 227 15 0 chr6 83642473 83642676 -65874361 - B3 SINE B2 -10 206 1 2 1223 445 287 56 0 chr6 83642706 83642849 -65874188 - RMER15 LTR ERVL -2 573 423 2 1223 2329 113 0 66 chr6 83643435 83643861 -65873176 - RMER10B LTR ERVL 0 398 1 2 1223 1169 224 101 35 chr6 83644198 83644545 -65872492 + ORR1D2 LTR MaLR 1 370 0 2 1223 781 173 60 0 chr6 83644780 83644930 -65872107 + RLTR40 LTR ERVK 10 168 -649 2 1223 775 102 0 8 chr6 83644937 83645056 -65871981 + B2_Mm2 SINE B2 1 118 -77 2 1223 234 337 29 19 chr6 83645459 83645562 -65871475 + Lx8 LINE L1 6929 7032 -441 2 1223 806 300 57 42 chr6 83645757 83646088 -65870949 + Lx8 LINE L1 7132 7467 -6 2 1223 462 221 23 62 chr6 83646131 83646261 -65870776 + B1_Mur2 SINE Alu 5 129 -20 2 1223 522 99 0 0 chr6 83646261 83646352 -65870685 + (GA)n Simple_repeat Simple_repeat 2 92 0 2 1223 601 254 111 0 chr6 83646878 83647067 -65869970 + ID_B1 SINE B4 1 210 -14 2 1223 334 162 65 39 chr6 83647081 83647158 -65869879 + PB1D9 SINE Alu 21 99 -21 2 1223 289 324 69 14 chr6 83647549 83647693 -65869344 + L1MB8 LINE L1 6027 6178 0 2 1223 1295 243 21 65 chr6 83647892 83648275 -65868762 - MTE2a LTR MaLR -11 368 3 2 1223 4288 151 56 15 chr6 83648288 83649069 -65867968 + Lx LINE L1 5842 6654 0 2 1223 183 42 0 0 chr6 83649421 83649445 -65867592 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 1223 207 0 0 0 chr6 83649452 83649475 -65867562 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1223 298 243 0 54 chr6 83649631 83649705 -65867332 + PB1D10 SINE Alu 41 110 -7 2 1223 373 366 43 11 chr6 83649738 83649923 -65867114 + L1MC4 LINE L1 7543 7733 -309 2 1223 315 200 28 28 chr6 83650150 83650222 -65866815 - ID_B1 SINE B4 -26 198 127 2 1223 29 28 0 0 chr6 83650442 83650478 -65866559 + AT_rich Low_complexity Low_complexity 1 36 0 2 1223 318 235 11 86 chr6 83650559 83650635 -65866402 + PB1D10 SINE Alu 14 88 -29 2 1223 255 31 0 0 chr6 83650635 83650667 -65866370 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1223 405 0 0 0 chr6 83650667 83650711 -65866326 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1223 318 235 11 86 chr6 83650711 83650726 -65866311 + PB1D10 SINE Alu 89 98 -19 2 1223 433 307 87 0 chr6 83651376 83651526 -65865511 + RSINE1 SINE B4 3 165 0 2 1223 219 250 50 0 chr6 83651596 83651656 -65865381 + B3A SINE B2 99 161 -37 2 1223 420 20 0 0 chr6 83651656 83651705 -65865332 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1223 263 26 26 0 chr6 83651743 83651756 -65865281 + (GAAA)n Simple_repeat Simple_repeat 2 14 0 2 1223 932 67 59 0 chr6 83651756 83651891 -65865146 + B1_Mus1 SINE Alu 5 147 -1 2 1223 263 26 26 0 chr6 83651891 83651915 -65865122 + (GAAA)n Simple_repeat Simple_repeat 3 26 0 2 1223 1109 123 6 0 chr6 83651915 83652094 -65864943 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1223 366 224 92 0 chr6 83653241 83653339 -65863698 + PB1D7 SINE Alu 5 111 -9 2 1223 194 0 39 0 chr6 83655062 83655088 -65861949 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 2 1223 1619 31 0 0 chr6 83655090 83655283 -65861754 - B2_Mm1a SINE B2 0 193 1 3 1223 525 287 67 52 chr6 83656323 83656591 -65860446 + L1MB8 LINE L1 5738 6009 -169 3 1223 687 315 30 0 chr6 83656612 83656812 -65860225 - ID_B1 SINE B4 -16 208 3 3 1223 432 208 24 32 chr6 83656813 83656937 -65860100 + L1MB8 LINE L1 6046 6168 -10 3 1223 779 215 27 85 chr6 83657419 83657643 -65859394 + B3 SINE B2 1 211 -5 3 1223 662 252 56 71 chr6 83658388 83658626 -65858411 + ID_B1 SINE B4 7 246 -46 3 1223 403 286 44 50 chr6 83659105 83659120 -65857917 + ID_B1 SINE B4 77 118 -174 3 1223 835 120 30 0 chr6 83659120 83659253 -65857784 + B1_Mus1 SINE Alu 10 146 -2 3 1223 403 286 44 50 chr6 83659253 83659306 -65857731 + ID_B1 SINE B4 119 282 -10 3 1223 183 177 32 16 chr6 83659621 83659684 -65857353 + CT-rich Low_complexity Low_complexity 4 67 0 3 1223 297 0 0 0 chr6 83659903 83659936 -65857101 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1223 342 336 0 18 chr6 83660984 83661093 -65855944 + C-rich Low_complexity Low_complexity 1 107 0 3 1223 245 316 25 0 chr6 83661653 83661732 -65855305 - L2b LINE L2 -5 3370 3290 3 1223 447 19 0 0 chr6 83661757 83661809 -65855228 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 1223 369 0 0 0 chr6 83663954 83663995 -65853042 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1223 202 184 20 20 chr6 83665753 83665803 -65851234 + T-rich Low_complexity Low_complexity 3 52 0 3 1223 441 0 0 0 chr6 83666374 83666423 -65850614 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 3 1223 216 0 0 0 chr6 83666617 83666641 -65850396 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1223 216 256 24 71 chr6 83666955 83667039 -65849998 + ID_B1 SINE B4 83 162 -62 3 1223 221 128 21 0 chr6 83667048 83667095 -65849942 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 3 1223 339 25 0 0 chr6 83667732 83667772 -65849265 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1223 424 320 106 27 chr6 83668044 83668336 -65848701 - L1MC LINE L1 -2067 5815 5501 3 1223 468 266 42 152 chr6 83668453 83668670 -65848367 - B3A SINE B2 -5 193 1 3 1223 305 313 130 0 chr6 83668828 83668959 -65848078 - B1F SINE Alu 0 149 2 3 1223 468 0 0 0 chr6 83669163 83669215 -65847822 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1223 237 265 106 37 chr6 83669471 83669632 -65847405 - L1MC LINE L1 -1999 5883 5712 3 1223 336 48 0 0 chr6 83669639 83669681 -65847356 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1223 453 19 0 0 chr6 83669681 83669734 -65847303 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1223 715 312 57 36 chr6 83669755 83670034 -65847003 - B4A SINE B4 -7 285 1 3 1223 331 280 68 29 chr6 83670153 83670256 -65846781 - PB1D7 SINE Alu -19 108 2 3 1223 266 269 19 6 chr6 83670826 83670971 -65846066 - B3 SINE B2 -7 209 3 3 1223 239 161 18 0 chr6 83671162 83671218 -65845819 + GA-rich Low_complexity Low_complexity 2 58 0 3 1223 427 200 30 50 chr6 83671283 83671383 -65845654 + U6 snRNA snRNA 7 104 -3 3 1223 422 148 0 24 chr6 83671405 83671488 -65845549 + GA-rich Low_complexity Low_complexity 4 84 0 3 1223 277 283 133 0 chr6 83671489 83671602 -65845435 - MER2 DNA MER2_type -89 256 129 3 1223 211 204 0 0 chr6 83671927 83671971 -65845066 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1223 491 260 75 16 chr6 83672526 83672594 -65844443 - L1MA5A LINE L1 -266 5905 5795 3 1223 669 213 19 13 chr6 83672594 83672751 -65844286 - RSINE1 SINE B4 -6 159 2 3 1223 657 166 42 0 chr6 83672751 83672876 -65844161 - L1MA5A LINE L1 -470 5827 5665 3 1223 367 187 52 40 chr6 83673122 83673295 -65843742 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 3 1223 883 270 9 0 chr6 83673302 83673513 -65843524 - B3 SINE B2 -1 215 3 3 1223 687 87 0 0 chr6 83673954 83674058 -65842979 + (GA)n Simple_repeat Simple_repeat 1 104 0 3 1223 471 205 171 0 chr6 83674062 83674179 -65842858 - B1_Mur2 SINE Alu -12 137 1 3 1223 375 23 0 0 chr6 83674404 83674448 -65842589 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1223 562 242 113 35 chr6 83674464 83674722 -65842315 - L1MA4 LINE L1 -395 5905 5649 3 1223 513 194 73 9 chr6 83674858 83674967 -65842070 + PB1D10 SINE Alu 1 116 -1 3 1223 29 47 0 0 chr6 83675186 83675229 -65841808 + AT_rich Low_complexity Low_complexity 1 43 0 3 1223 243 0 0 0 chr6 83675231 83675258 -65841779 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1223 1083 78 0 0 chr6 83675260 83675402 -65841635 - B1_Mus1 SINE Alu -6 142 1 3 1223 36 62 0 0 chr6 83675404 83675468 -65841569 + AT_rich Low_complexity Low_complexity 1 64 0 3 1223 1160 98 23 6 chr6 83675690 83675865 -65841172 - B2_Mm2 SINE B2 -16 179 2 3 1223 236 211 0 50 chr6 83676075 83676135 -65840902 - B4A SINE B4 -142 150 94 3 1223 320 85 0 0 chr6 83676092 83676139 -65840898 - B1_Mus1 SINE Alu -96 52 6 3 1223 1153 85 74 0 chr6 83676178 83676354 -65840683 - B2_Mm2 SINE B2 -5 190 2 3 1223 617 218 46 29 chr6 83676500 83676663 -65840374 + B3A SINE B2 3 171 -45 3 1223 619 217 23 30 chr6 83676892 83677025 -65840012 - RSINE1 SINE B4 -31 134 3 3 1223 1669 212 25 33 chr6 83677074 83677439 -65839598 - ORR1D2 LTR MaLR 0 370 9 3 1223 434 269 49 7 chr6 83677784 83677926 -65839111 + B1_Mur2 SINE Alu 1 148 -1 3 1223 651 208 89 39 chr6 83678158 83678338 -65838699 - B3A SINE B2 -1 197 9 3 1223 317 225 119 39 chr6 83678336 83678446 -65838591 - B1_Mur2 SINE Alu -40 109 1 3 1223 319 335 144 25 chr6 83678477 83678581 -65838456 - L1MD3 LINE L1 -2009 5986 5859 3 1223 926 176 90 35 chr6 83678581 83678781 -65838256 - B3 SINE B2 -5 211 1 3 1223 319 335 144 25 chr6 83678781 83678912 -65838125 - L1MD3 LINE L1 -2137 5858 5723 3 1223 706 230 107 24 chr6 83678933 83679138 -65837899 + ID_B1 SINE B4 1 222 -2 3 1223 858 231 56 5 chr6 83679140 83679319 -65837718 + B3 SINE B2 1 189 -27 3 1223 324 0 0 0 chr6 83679319 83679355 -65837682 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1223 858 231 56 5 chr6 83679355 83679371 -65837666 + B3 SINE B2 190 206 -10 3 1223 231 191 159 14 chr6 83680590 83680659 -65836378 - ID4 SINE ID -4 79 1 3 1223 254 322 22 0 chr6 83680677 83680767 -65836270 - PB1D10 SINE Alu -7 110 19 3 1223 207 261 15 30 chr6 83680828 83680895 -65836142 + MIRm SINE MIR 131 196 -80 3 1223 537 273 32 64 chr6 83681052 83681240 -65835797 - B3A SINE B2 -16 182 1 3 1223 306 0 0 0 chr6 83681410 83681444 -65835593 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1223 344 236 52 22 chr6 83681444 83681546 -65835491 - PB1D10 SINE Alu -11 106 5 3 1223 1151 99 6 0 chr6 83681785 83681957 -65835080 + (TTTC)n Simple_repeat Simple_repeat 3 175 0 3 1223 519 17 0 0 chr6 83681957 83682017 -65835020 + (TTC)n Simple_repeat Simple_repeat 2 61 0 3 1223 1111 81 0 0 chr6 83682018 83682166 -65834871 - B1_Mus1 SINE Alu 0 148 1 3 1223 235 194 0 43 chr6 83682562 83682632 -65834405 + CT-rich Low_complexity Low_complexity 3 69 0 3 1223 490 113 65 0 chr6 83682698 83682822 -65834215 + (TCTA)n Simple_repeat Simple_repeat 4 135 0 3 1223 263 192 32 26 chr6 83682917 83683010 -65834027 + PB1D7 SINE Alu 36 141 -6 3 1223 437 232 18 18 chr6 83683481 83683595 -65833442 + PB1D10 SINE Alu 2 115 -2 3 1223 219 300 117 51 chr6 83683595 83683618 -65833419 + B4 SINE B4 87 232 -60 3 1223 456 321 88 69 chr6 83683652 83683913 -65833124 + B4 SINE B4 9 274 -18 3 1223 356 271 43 106 chr6 83684061 83684102 -65832935 + MT2B LTR ERVL 126 168 -433 3 1223 1811 152 47 50 chr6 83684102 83684483 -65832554 - ORR1C2 LTR MaLR -4 380 1 3 1223 356 271 43 106 chr6 83684483 83684602 -65832435 + MT2B LTR ERVL 169 276 -325 3 1223 824 74 41 0 chr6 83684506 83684628 -65832409 + B1_Mus2 SINE Alu 21 147 0 3 1223 426 297 25 0 chr6 83684707 83684825 -65832212 + PB1 SINE Alu 3 123 -4 3 1223 1025 193 44 5 chr6 83685011 83685214 -65831823 + ID_B1 SINE B4 3 213 -11 3 1223 1383 65 32 0 chr6 83685392 83685577 -65831460 + B2_Mm2 SINE B2 2 192 -3 3 1223 249 260 68 0 chr6 83685752 83685825 -65831212 + PB1D10 SINE Alu 27 104 -13 3 1223 211 311 124 62 chr6 83686342 83686503 -65830534 - MER5B DNA MER1_type -5 173 3 3 1223 587 279 82 16 chr6 83686930 83687112 -65829925 + ID_B1 SINE B4 7 200 -24 3 1223 204 287 10 29 chr6 83687389 83687493 -65829544 + CT-rich Low_complexity Low_complexity 3 104 0 3 1223 417 156 0 0 chr6 83688187 83688264 -65828773 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1223 1281 219 43 24 chr6 83688694 83689064 -65827973 - MTEb LTR MaLR 0 379 3 3 1223 413 279 81 16 chr6 83689064 83689188 -65827849 - MTEb-int LTR MaLR -2 1578 1447 3 1223 1337 45 85 0 chr6 83689188 83689364 -65827673 + B2_Mm1a SINE B2 2 192 -1 3 1223 739 130 75 22 chr6 83689482 83689616 -65827421 - B1_Mus2 SINE Alu 0 147 7 3 1223 416 252 68 48 chr6 83689485 83689631 -65827406 - B4 SINE B4 -69 223 75 3 1223 332 238 0 0 chr6 83689610 83689673 -65827364 - MTEb-int LTR MaLR -232 1348 1286 3 1223 2179 120 15 76 chr6 83689680 83690086 -65826951 - ORR1B1 LTR MaLR -13 381 1 3 1223 4552 217 124 21 chr6 83690086 83690890 -65826147 - MTEb-int LTR MaLR -299 1281 387 3 1223 1509 184 113 12 chr6 83690890 83691015 -65826022 - ORR1D1 LTR MaLR 0 374 241 3 1223 243 0 0 0 chr6 83691015 83691042 -65825995 + (CAGG)n Simple_repeat Simple_repeat 4 30 0 3 1223 1509 184 113 12 chr6 83691042 83691252 -65825785 - ORR1D1 LTR MaLR -134 240 7 3 1223 4552 217 124 21 chr6 83691252 83691608 -65825429 - MTEb-int LTR MaLR -1194 386 1 3 1223 452 250 15 61 chr6 83691609 83691711 -65825326 - MTEb LTR MaLR -1 378 281 3 1223 1768 162 39 37 chr6 83691711 83692120 -65824917 - RMER17C LTR ERVK 0 410 1 3 1223 452 283 17 90 chr6 83692120 83692181 -65824856 - MTEb LTR MaLR -99 280 214 3 1223 225 289 0 0 chr6 83692186 83692238 -65824799 - MTE2b LTR MaLR -327 52 1 3 1223 25 0 0 0 chr6 83692697 83692722 -65824315 + AT_rich Low_complexity Low_complexity 1 25 0 3 1223 234 91 0 0 chr6 83693478 83693511 -65823526 + (CAGG)n Simple_repeat Simple_repeat 2 34 0 3 1223 382 141 0 34 chr6 83693557 83693645 -65823392 + GA-rich Low_complexity Low_complexity 1 85 0 3 1223 192 179 0 0 chr6 83693893 83693932 -65823105 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1223 375 313 17 9 chr6 83696359 83696475 -65820562 + B1F SINE Alu 1 117 -32 4 1223 285 155 0 0 chr6 83696552 83696610 -65820427 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1223 314 100 0 16 chr6 83699096 83699157 -65817880 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1223 387 0 0 0 chr6 83699638 83699681 -65817356 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1223 288 0 0 0 chr6 83699681 83699712 -65817325 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1223 249 220 16 48 chr6 83700178 83700240 -65816797 - ID4 SINE ID -12 71 12 4 1223 1072 227 121 35 chr6 83700959 83701306 -65815731 + MTEb LTR MaLR 1 377 -2 4 1223 385 155 33 33 chr6 83701708 83701828 -65815209 + CT-rich Low_complexity Low_complexity 4 123 0 4 1223 486 0 0 0 chr6 83702489 83702543 -65814494 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1223 911 209 70 0 chr6 83707296 83707497 -65809540 + ID_B1 SINE B4 2 216 -8 4 1223 227 227 0 15 chr6 83707509 83707576 -65809461 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1223 533 272 0 0 chr6 83708837 83708951 -65808086 + PB1D9 SINE Alu 1 114 -6 4 1223 802 149 29 0 chr6 83708951 83709013 -65808024 + polypurine Low_complexity Low_complexity 1 63 0 4 1223 989 87 11 11 chr6 83709013 83709187 -65807850 + (GAA)n Simple_repeat Simple_repeat 3 176 0 4 1223 802 149 29 0 chr6 83709187 83709298 -65807739 + polypurine Low_complexity Low_complexity 64 178 0 4 1223 394 73 36 0 chr6 83709298 83709353 -65807684 + (GGGGA)n Simple_repeat Simple_repeat 4 60 0 4 1223 1253 79 0 11 chr6 83709353 83709533 -65807504 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 4 1223 876 37 0 0 chr6 83709534 83709642 -65807395 + (GGAAA)n Simple_repeat Simple_repeat 3 110 0 4 1223 948 233 9 23 chr6 83709700 83709920 -65807117 + ID_B1 SINE B4 2 218 -6 4 1223 455 268 15 61 chr6 83710027 83710158 -65806879 + RSINE1 SINE B4 12 136 -29 4 1223 377 189 156 7 chr6 83710184 83710290 -65806747 + PB1D9 SINE Alu 11 142 -7 4 1223 236 143 20 39 chr6 83710393 83710444 -65806593 - B3 SINE B2 -158 58 9 4 1223 316 299 132 43 chr6 83710479 83710874 -65806163 - L1M4b LINE L1 -5670 1664 1235 4 1223 438 276 314 18 chr6 83710939 83711321 -65805716 - L1M4b LINE L1 -6215 1119 618 4 1223 204 40 0 0 chr6 83711321 83711346 -65805691 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1223 438 276 314 18 chr6 83711346 83711361 -65805676 - L1M4b LINE L1 -6717 617 605 4 1223 246 355 70 70 chr6 83711468 83711583 -65805454 - L1M4b LINE L1 -6943 391 277 4 1223 383 207 0 12 chr6 83712194 83712277 -65804760 - B3A SINE B2 -116 82 1 4 1223 289 250 0 0 chr6 83712476 83712540 -65804497 - PB1D10 SINE Alu -6 111 48 4 1223 233 263 106 41 chr6 83713872 83713995 -65803042 + MIRb SINE MIR 1 131 -137 4 1223 452 225 292 6 chr6 83714170 83714331 -65802706 - ID_B1 SINE B4 -17 207 1 4 1223 886 245 89 19 chr6 83714359 83714617 -65802420 + B4A SINE B4 1 276 -16 4 1223 514 267 0 106 chr6 83714753 83714904 -65802133 + ID_B1 SINE B4 82 216 -8 4 1223 910 101 65 0 chr6 83716576 83716715 -65800322 - B1_Mus1 SINE Alu 0 148 1 4 1223 427 212 8 92 chr6 83718874 83719004 -65798033 - L2c LINE L2 -2 3385 3267 4 1223 189 0 0 0 chr6 83720388 83720409 -65796628 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1223 1248 53 12 6 chr6 83721939 83722110 -65794927 + B2_Mm2 SINE B2 1 172 -23 4 1223 190 326 99 22 chr6 83722362 83722453 -65794584 + MIR SINE MIR 43 140 -68 4 1223 252 337 55 22 chr6 83724205 83724296 -65792741 - Charlie9 DNA MER1_type -2658 99 6 4 1223 210 274 160 17 chr6 83725346 83725465 -65791572 - L2b LINE L2 -1 3374 3239 4 1223 21 0 0 0 chr6 83725717 83725738 -65791299 + GC_rich Low_complexity Low_complexity 1 21 0 4 1223 304 281 50 50 chr6 83726267 83726368 -65790669 - PB1D10 SINE Alu -1 116 16 4 1223 626 182 80 36 chr6 83726407 83726544 -65790493 - B1_Mur2 SINE Alu 0 149 7 4 1223 230 224 34 17 chr6 83726551 83726610 -65790427 - ID_B1 SINE B4 0 224 165 4 1223 3769 148 46 22 chr6 83726800 83727448 -65789589 + RLTR33 LTR ERVK 15 678 0 4 1223 640 241 30 50 chr6 83727540 83727741 -65789296 + B3A SINE B2 2 198 0 4 1223 885 201 0 7 chr6 83727744 83727889 -65789148 + B1_Mur1 SINE Alu 2 145 -4 4 1223 292 0 45 23 chr6 83728150 83728194 -65788843 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 4 1223 341 332 77 24 chr6 83728591 83728798 -65788239 - MIR SINE MIR -25 237 20 4 1223 245 115 426 0 chr6 83729007 83729068 -65787969 + Lx LINE L1 6556 6642 -12 4 1223 483 18 0 0 chr6 83729069 83729125 -65787912 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 1223 1952 159 62 3 chr6 83729910 83730263 -65786774 + ORR1D1 LTR MaLR 1 374 0 4 1223 680 225 6 96 chr6 83731015 83731182 -65785855 + RSINE1 SINE B4 2 153 -12 4 1223 288 0 0 0 chr6 83731189 83731221 -65785816 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1223 243 0 0 0 chr6 83731221 83731247 -65785790 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1223 1297 91 26 26 chr6 83731273 83731433 -65785604 + B2_Mm1t SINE B2 1 159 -34 4 1223 279 0 0 0 chr6 83731433 83731464 -65785573 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 4 1223 1297 91 26 26 chr6 83731464 83731494 -65785543 + B2_Mm1t SINE B2 160 191 -2 4 1223 252 214 0 0 chr6 83731764 83731820 -65785217 + GA-rich Low_complexity Low_complexity 1 56 0 4 1223 188 273 0 0 chr6 83732279 83732323 -65784714 - MIR SINE MIR -118 144 101 4 1223 326 270 14 0 chr6 83732338 83732412 -65784625 - MER81 DNA AcHobo -39 75 1 4 1223 263 289 0 135 chr6 83732448 83732596 -65784441 - B1_Mur3 SINE Alu -21 128 1 4 1223 507 235 98 0 chr6 83732468 83732600 -65784437 - ID_B1 SINE B4 -2 222 78 4 1223 1069 109 51 0 chr6 83732649 83732805 -65784232 + B2_Mm1t SINE B2 4 167 -26 4 1223 321 91 367 35 chr6 83732862 83732971 -65784066 + B2_Mm2 SINE B2 47 191 -4 4 1223 930 200 55 25 chr6 83732971 83733171 -65783866 - B3 SINE B2 -6 210 5 4 1223 659 158 27 0 chr6 83733176 83733322 -65783715 + CT-rich Low_complexity Low_complexity 2 151 0 4 1223 654 177 0 34 chr6 83733322 83733439 -65783598 - B1F2 SINE Alu -34 115 3 4 1223 468 0 0 0 chr6 83733511 83733563 -65783474 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1223 299 364 54 8 chr6 83733840 83733970 -65783067 + B1F1 SINE Alu 2 137 -12 4 1223 771 267 54 78 chr6 83734004 83734085 -65782952 - B4 SINE B4 -3 289 218 4 1223 186 43 0 0 chr6 83734085 83734108 -65782929 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1223 333 0 0 0 chr6 83734118 83734155 -65782882 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1223 771 267 54 78 chr6 83734155 83734358 -65782679 - B4 SINE B4 -77 215 1 4 1223 21 57 0 0 chr6 83734359 83734394 -65782643 + AT_rich Low_complexity Low_complexity 1 35 0 4 1223 1022 241 19 0 chr6 83734401 83734613 -65782424 - B3 SINE B2 0 216 1 4 1223 23 0 0 0 chr6 83734618 83734641 -65782396 + AT_rich Low_complexity Low_complexity 1 23 0 4 1223 2283 156 74 5 chr6 83734794 83735188 -65781849 - MTC LTR MaLR 0 421 1 4 1223 646 253 22 22 chr6 83735994 83736172 -65780865 - RMER5 LTR ERV1 0 534 357 4 1223 810 239 60 21 chr6 83736221 83736456 -65780581 - RMER5 LTR ERV1 -259 275 32 4 1223 324 0 0 0 chr6 83736631 83736667 -65780370 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1223 910 239 60 85 chr6 83737058 83737516 -65779521 + RMER15 LTR ERVL 3 572 -3 4 1223 449 269 0 55 chr6 83739507 83739651 -65777386 - PB1D9 SINE Alu 0 149 18 4 1223 235 263 28 104 chr6 83739558 83739664 -65777373 - MT2B LTR ERVL -338 263 166 4 1223 455 295 0 0 chr6 83739665 83739770 -65777267 - PB1D10 SINE Alu -8 109 5 4 1223 187 264 19 0 chr6 83739833 83739886 -65777151 + L2c LINE L2 3105 3158 -229 4 1223 838 210 71 24 chr6 83740131 83740341 -65776696 + ID_B1 SINE B4 3 222 -2 4 1223 360 0 0 0 chr6 83740754 83740794 -65776243 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1223 1188 82 0 0 chr6 83740794 83740941 -65776096 - B1_Mm SINE Alu 0 147 1 4 1223 256 229 0 0 chr6 83740945 83740993 -65776044 + MTE2b LTR MaLR 282 329 -50 4 1223 239 331 36 48 chr6 83741723 83741888 -65775149 - LTR89 LTR ERVL? -19 860 698 4 1223 359 268 0 12 chr6 83742097 83742180 -65774857 + ID4 SINE ID 2 83 0 4 1223 314 238 119 60 chr6 83742337 83742538 -65774499 - Charlie5 DNA MER1_type 0 2624 2412 4 1223 243 0 0 0 chr6 83742547 83742574 -65774463 + (TTA)n Simple_repeat Simple_repeat 3 29 0 4 1223 852 274 10 0 chr6 83743099 83743307 -65773730 + ID_B1 SINE B4 2 211 -13 4 1223 830 213 26 16 chr6 83743334 83743525 -65773512 - B3A SINE B2 -4 194 2 4 1223 341 311 40 20 chr6 83743644 83743792 -65773245 + ID_B1 SINE B4 77 219 -5 4 1223 507 181 75 0 chr6 83744154 83744248 -65772789 + ID_B1 SINE B4 109 209 -15 4 1223 290 274 0 0 chr6 83744698 83744771 -65772266 + ID2 SINE ID 9 81 -2 4 1223 286 290 54 0 chr6 83744771 83744791 -65772246 + ID_B1 SINE B4 9 106 -118 4 1223 227 339 25 25 chr6 83745914 83746032 -65771005 - L3 LINE CR1 -746 3743 3626 4 1223 1179 42 0 14 chr6 83746105 83746243 -65770794 + B1_Mus1 SINE Alu 1 138 -10 4 1223 220 0 56 28 chr6 83746243 83746279 -65770758 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 4 1223 279 79 0 0 chr6 83746987 83747025 -65770012 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1223 385 240 190 32 chr6 83747415 83747620 -65769417 + MIR SINE MIR 22 265 -3 4 1223 681 36 0 0 chr6 83749922 83750006 -65767031 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 5 1223 817 145 13 70 chr6 83750006 83750162 -65766875 + B1_Mur4 SINE Alu 2 148 -2 5 1223 950 212 42 24 chr6 83751776 83751988 -65765049 - B3 SINE B2 0 216 1 5 1223 181 225 135 40 chr6 83752673 83752747 -65764290 + L4 LINE RTE 1785 1865 -164 5 1223 240 265 110 20 chr6 83753027 83753127 -65763910 - MTEb LTR MaLR -241 138 30 5 1223 750 197 102 21 chr6 83753366 83753553 -65763484 - B3 SINE B2 -12 204 3 5 1223 400 221 184 9 chr6 83754369 83754483 -65762554 - B1_Mur1 SINE Alu -13 136 3 5 1223 385 308 14 95 chr6 83754638 83754785 -65762252 + ID_B1 SINE B4 42 176 -48 5 1223 473 218 40 0 chr6 83754698 83754799 -65762238 + PB1D10 SINE Alu 7 111 -6 5 1223 216 0 0 0 chr6 83754808 83754832 -65762205 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1223 1287 20 0 0 chr6 83754832 83754978 -65762059 - B1_Mm SINE Alu 0 147 2 5 152 243 265 100 29 chr6 83755007 83755077 -65761960 + ID4 SINE ID 2 76 -7 5 1224 207 88 0 0 chr6 83755990 83756024 -65761013 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1224 245 233 67 0 chr6 83756168 83756228 -65760809 + ID4_ SINE ID 1 64 -19 5 1224 262 308 51 0 chr6 83757325 83757403 -65759634 + ID4 SINE ID 2 83 0 5 1224 386 256 0 23 chr6 83758894 83758913 -65758124 + B4 SINE B4 70 86 -206 5 1224 506 127 0 0 chr6 83758913 83758984 -65758053 + B1_Mur3 SINE Alu 2 72 -77 5 1224 235 306 16 0 chr6 83759049 83759111 -65757926 + ID4_ SINE ID 4 66 -17 5 1224 22 35 0 0 chr6 83759169 83759198 -65757839 + AT_rich Low_complexity Low_complexity 1 29 0 5 1224 1482 238 30 58 chr6 83760166 83760527 -65756510 + ORR1E LTR MaLR 3 353 -6 5 1224 204 171 0 24 chr6 83760589 83760631 -65756406 + T-rich Low_complexity Low_complexity 2 42 0 5 1224 736 225 49 0 chr6 83760715 83760857 -65756180 + B1_Mur1 SINE Alu 1 149 0 5 1224 394 248 147 31 chr6 83761364 83761493 -65755544 - ID_B1 SINE B4 0 224 81 5 1224 1456 88 16 0 chr6 83761583 83761775 -65755262 - B2_Mm2 SINE B2 0 195 1 5 1224 385 244 10 51 chr6 83761823 83761946 -65755091 - B1F1 SINE Alu -1 147 24 5 1224 195 69 0 0 chr6 83762022 83762051 -65754986 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 5 1224 1197 61 7 0 chr6 83762052 83762199 -65754838 - B1_Mus1 SINE Alu 0 148 1 5 1224 488 299 17 40 chr6 83762660 83762834 -65754203 - B3A SINE B2 -2 196 27 5 1224 1365 72 0 72 chr6 83762838 83763047 -65753990 - B2_Mm2 SINE B2 0 195 2 5 1224 237 239 127 0 chr6 83763116 83763187 -65753850 - B1F1 SINE Alu -2 147 68 5 1224 280 275 99 0 chr6 83763124 83763215 -65753822 - ID_B1 SINE B4 -10 214 115 5 1224 318 257 0 0 chr6 83763359 83763434 -65753603 - ID_B1 SINE B4 -70 154 84 5 1224 412 251 46 148 chr6 83763472 83763668 -65753369 + B4 SINE B4 1 176 -116 5 1224 597 219 33 8 chr6 83763870 83763990 -65753047 - RSINE1 SINE B4 -13 152 30 5 1224 198 0 0 0 chr6 83764645 83764667 -65752370 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1224 712 263 36 76 chr6 83764976 83765305 -65751732 + RLTR11A2 LTR ERVK 1 316 -211 5 1224 547 227 53 80 chr6 83765315 83765502 -65751535 + RLTR11B LTR ERVK 257 438 -15 5 1224 369 268 35 26 chr6 83765622 83765737 -65751300 + PB1D7 SINE Alu 5 120 0 5 1224 818 211 20 50 chr6 83765905 83766105 -65750932 - B3A SINE B2 -4 194 1 5 1224 23 0 0 0 chr6 83766166 83766189 -65750848 + AT_rich Low_complexity Low_complexity 1 23 0 5 1224 430 236 22 0 chr6 83766591 83766680 -65750357 + RSINE1 SINE B4 6 96 -69 5 1224 603 126 0 0 chr6 83766724 83766819 -65750218 + (TCCA)n Simple_repeat Simple_repeat 2 96 0 5 1224 1093 219 194 16 chr6 83766925 83767245 -65749792 - MTEa LTR MaLR 0 379 3 5 1224 958 221 9 33 chr6 83767432 83767647 -65749390 + B3 SINE B2 1 210 -6 5 1224 445 298 57 0 chr6 83767819 83767943 -65749094 + ID_B1 SINE B4 93 223 -1 5 1224 439 206 7 0 chr6 83768061 83768153 -65748884 + B1F SINE Alu 10 106 -14 5 1224 329 200 29 0 chr6 83768823 83768893 -65748144 - ID4_ SINE ID -10 73 2 5 1224 365 275 22 118 chr6 83769263 83769399 -65747638 + MER21B LTR ERV1 273 395 -468 5 1224 655 222 21 7 chr6 83769502 83769647 -65747390 - B1F2 SINE Alu 0 149 3 5 1224 915 256 174 36 chr6 83769651 83770012 -65747025 + MER21B LTR ERV1 449 859 -4 5 1224 315 270 0 51 chr6 83770265 83770343 -65746694 - BC1_Mm scRNA scRNA -68 84 11 5 1224 427 298 110 12 chr6 83770883 83771056 -65745981 + MLT1F2 LTR MaLR 331 520 -40 5 1224 344 285 49 195 chr6 83771209 83771579 -65745458 - ORR1E LTR MaLR -43 316 1 5 1224 951 280 21 35 chr6 83772384 83772669 -65744368 + B4A SINE B4 4 284 -8 5 1224 22 80 0 0 chr6 83772754 83772804 -65744233 + AT_rich Low_complexity Low_complexity 1 50 0 5 1224 563 271 274 13 chr6 83772804 83773122 -65743915 + MLT1A1 LTR MaLR 1 401 -7 5 1224 246 128 0 0 chr6 83773126 83773165 -65743872 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 5 1224 640 190 50 28 chr6 83773166 83773183 -65743854 - B1_Mur3 SINE Alu -5 144 128 5 1224 285 29 0 0 chr6 83773183 83773217 -65743820 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1224 640 190 50 28 chr6 83773217 83773340 -65743697 - B1_Mur3 SINE Alu -22 127 1 5 1224 1229 61 0 0 chr6 83773937 83774084 -65742953 + B1_Mus2 SINE Alu 1 147 0 5 1224 261 0 0 0 chr6 83774541 83774570 -65742467 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 5 1224 1083 181 45 40 chr6 83774935 83775159 -65741878 + URR1A DNA MER1_type 1 225 -1 5 1224 519 258 32 38 chr6 83774994 83775179 -65741858 - CYRA11_Mm Unknown Y-chromosome -279 338 155 5 1224 661 241 35 28 chr6 83775481 83775626 -65741411 - B1_Mur1 SINE Alu 0 149 4 5 1224 315 268 37 11 chr6 83775626 83775735 -65741302 - PB1D10 SINE Alu 0 120 7 5 1224 726 191 8 0 chr6 83776623 83776749 -65740288 - B1_Mur4 SINE Alu -17 133 7 5 1224 206 360 20 99 chr6 83777394 83777545 -65739492 - L2c LINE L2 -14 3373 3235 5 1224 1137 62 0 7 chr6 83777847 83777994 -65739043 + B1_Mus1 SINE Alu 2 147 -1 5 1224 1371 147 4 26 chr6 83778173 83778404 -65738633 + URR1A DNA MER1_type 1 226 0 5 1224 469 272 32 8 chr6 83778672 83778798 -65738239 + B4 SINE B4 6 134 -158 5 1224 341 299 102 0 chr6 83778982 83779109 -65737928 + L2a LINE L2 3287 3426 0 5 1224 343 335 39 66 chr6 83779216 83779293 -65737744 - MER82 DNA MER2_type -33 620 548 5 1224 982 239 207 13 chr6 83779293 83779607 -65737430 + MTEb LTR MaLR 1 375 -4 5 1224 343 335 39 66 chr6 83779607 83779711 -65737326 - MER82 DNA MER2_type -106 547 444 5 1224 302 235 36 54 chr6 83782280 83782382 -65734655 + PB1D10 SINE Alu 16 118 -2 5 1224 291 71 0 0 chr6 83782383 83782425 -65734612 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1224 3198 75 2 0 chr6 83782454 83782853 -65734184 + MTB LTR MaLR 1 400 0 5 1224 846 209 85 5 chr6 83782901 83783089 -65733948 + B3 SINE B2 3 205 -11 5 1224 207 0 0 0 chr6 83783340 83783363 -65733674 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1224 1201 29 0 0 chr6 83783363 83783501 -65733536 - B1_Mus1 SINE Alu -10 138 1 5 1224 376 296 82 14 chr6 83783545 83783692 -65733345 - RSINE1 SINE B4 -6 159 3 5 1224 467 90 0 13 chr6 83783705 83783784 -65733253 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1224 697 209 84 7 chr6 83783792 83783946 -65733091 - B3A SINE B2 -31 167 2 5 1224 490 230 11 31 chr6 83783982 83784107 -65732930 - B3A SINE B2 -69 124 5 5 1224 823 211 121 0 chr6 83784313 83784503 -65732534 + B3 SINE B2 1 213 -3 5 1224 1266 27 0 7 chr6 83784849 83784997 -65732040 + B1_Mus2 SINE Alu 1 147 0 5 1224 198 71 0 0 chr6 83784998 83785026 -65732011 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1224 624 287 72 49 chr6 83785264 83785528 -65731509 + MTD LTR MaLR 1 270 -149 5 1224 2701 259 27 111 chr6 83785528 83786640 -65730397 - RMER1A Other Other -224 806 15 5 1224 1655 36 5 0 chr6 83786671 83786863 -65730174 + B2_Mm1t SINE B2 1 193 0 5 1224 241 26 0 114 chr6 83786863 83786907 -65730130 + RMER19C LTR ERVK 573 611 0 5 1224 760 271 6 0 chr6 83787197 83787378 -65729659 - B3A SINE B2 -16 182 1 5 1224 764 187 0 0 chr6 83787389 83787523 -65729514 - B1_Mur4 SINE Alu -3 147 14 5 1224 4239 42 6 8 chr6 83787524 83788028 -65729009 + RLTR1C LTR ERV1 1 503 0 5 1224 289 282 58 33 chr6 83788083 83788204 -65728833 - L1MB4 LINE L1 -66 6117 5994 5 1224 2390 186 74 33 chr6 83788283 83788795 -65728242 + RMER16 LTR ERVK 1 533 0 5 1224 1205 48 0 0 chr6 83789108 83789254 -65727783 + B1_Mus2 SINE Alu 2 147 0 5 1224 183 152 0 0 chr6 83789255 83789301 -65727736 + A-rich Low_complexity Low_complexity 1 46 0 5 1224 507 228 149 31 chr6 83789347 83789394 -65727643 - MT2A LTR ERVL 0 533 483 5 1224 345 24 0 0 chr6 83789394 83789436 -65727601 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1224 1225 227 54 10 chr6 83789436 83789773 -65727264 - MT2A LTR ERVL -51 482 73 5 1224 966 109 43 0 chr6 83789775 83789913 -65727124 + B1_Mus1 SINE Alu 5 148 0 5 1224 392 259 194 11 chr6 83790349 83790540 -65726497 - L1MB4 LINE L1 -211 5969 5744 5 1224 333 0 0 0 chr6 83790567 83790604 -65726433 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1224 903 51 0 0 chr6 83790604 83790722 -65726315 - B1_Mus1 SINE Alu -9 139 22 6 1224 551 28 0 0 chr6 83790770 83790841 -65726196 + L1Md_F2 LINE L1 6499 6569 -13 6 1224 765 229 7 0 chr6 83790850 83790994 -65726043 - B1_Mus2 SINE Alu 0 147 3 6 1224 213 39 0 0 chr6 83790998 83791024 -65726013 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 6 1224 1174 94 6 0 chr6 83791026 83791196 -65725841 - B2_Mm1a SINE B2 -22 171 1 6 1224 275 221 72 21 chr6 83791214 83791311 -65725726 - L1M2 LINE L1 -873 5270 5169 6 1224 425 303 0 0 chr6 83791324 83791433 -65725604 - PB1D10 SINE Alu -8 109 1 6 1224 953 290 9 30 chr6 83792528 83792859 -65724178 - L1MA7 LINE L1 -353 5938 5615 6 1224 390 108 0 0 chr6 83792907 83792972 -65724065 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1224 436 289 68 62 chr6 83793314 83793406 -65723631 - B3A SINE B2 -35 163 72 6 1224 414 0 0 0 chr6 83793406 83793452 -65723585 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1224 436 289 68 62 chr6 83793452 83793521 -65723516 - B3A SINE B2 -127 71 2 6 1224 478 66 0 157 chr6 83793750 83793776 -65723261 - L1_Mus3 LINE L1 0 6638 6624 6 1224 1705 31 0 0 chr6 83793776 83793969 -65723068 - B2_Mm1a SINE B2 0 193 1 6 1224 478 66 0 157 chr6 83793969 83794050 -65722987 - L1_Mus3 LINE L1 -15 6623 6548 6 1224 231 276 91 13 chr6 83794087 83794164 -65722873 - ID SINE ID -140 84 2 6 1224 664 100 0 26 chr6 83794174 83794275 -65722762 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 6 1224 1088 90 7 0 chr6 83794275 83794420 -65722617 - B1_Mus2 SINE Alu -1 146 1 6 1224 664 100 0 26 chr6 83794420 83794431 -65722606 + (TTTC)n Simple_repeat Simple_repeat 3 13 0 6 1224 881 147 23 63 chr6 83795196 83795349 -65721688 + B2_Mm1t SINE B2 1 151 -42 6 1224 214 50 50 0 chr6 83795349 83795389 -65721648 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1224 881 147 23 63 chr6 83795389 83795409 -65721628 + B2_Mm1t SINE B2 152 167 -26 6 1224 234 77 756 20 chr6 83795474 83795552 -65721485 + B2_Mm2 SINE B2 47 181 -14 6 1224 430 242 10 10 chr6 83795631 83795727 -65721310 + PB1D10 SINE Alu 1 96 -21 6 1224 546 16 0 0 chr6 83795855 83795918 -65721119 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 1224 1213 260 10 24 chr6 83796668 83796963 -65720074 + B4A SINE B4 2 292 0 6 1224 239 314 16 63 chr6 83797002 83797128 -65719909 + PB1D9 SINE Alu 1 120 0 6 1224 226 330 37 84 chr6 83797136 83797351 -65719686 + HAL1 LINE L1 1480 1684 -823 6 1224 902 220 45 10 chr6 83797462 83797664 -65719373 - B3 SINE B2 -3 213 5 6 1224 436 229 93 0 chr6 83797696 83797814 -65719223 - B1F2 SINE Alu -17 132 4 6 1224 255 273 0 0 chr6 83798044 83798099 -65718938 - ID4_ SINE ID -22 61 7 6 1224 497 369 14 60 chr6 83798120 83798199 -65718838 - MLT1D LTR MaLR -116 389 312 6 1224 1228 166 8 75 chr6 83798199 83798278 -65718759 - URR1B DNA MER1_type 0 225 159 6 1224 1382 66 11 11 chr6 83798278 83798463 -65718574 - B2_Mm1t SINE B2 -8 185 1 6 1224 1228 166 8 75 chr6 83798463 83798624 -65718413 - URR1B DNA MER1_type -67 158 1 6 1224 497 369 14 60 chr6 83798624 83798829 -65718208 - MLT1D LTR MaLR -194 311 118 6 1224 321 156 60 13 chr6 83799171 83799411 -65717626 + (TCTA)n Simple_repeat Simple_repeat 1 251 0 6 1224 835 260 9 28 chr6 83799980 83800194 -65716843 + MTD LTR MaLR 1 210 -209 6 1224 484 162 165 33 chr6 83800201 83800322 -65716715 + B1_Mur4 SINE Alu 8 144 -6 6 1224 689 201 20 14 chr6 83800393 83800539 -65716498 + MTD LTR MaLR 273 419 0 6 1224 1262 80 51 0 chr6 83800808 83800983 -65716054 - B2_Mm1t SINE B2 -8 185 2 6 1224 29 28 0 0 chr6 83800987 83801023 -65716014 + AT_rich Low_complexity Low_complexity 1 36 0 6 1224 447 68 0 0 chr6 83801074 83801133 -65715904 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1224 434 286 14 41 chr6 83801504 83801650 -65715387 - B1F1 SINE Alu -6 143 2 6 1224 1125 233 88 36 chr6 83802095 83802425 -65714612 + ORR1E LTR MaLR 13 359 0 6 1224 967 195 78 5 chr6 83802568 83802759 -65714278 + B3 SINE B2 2 206 -10 6 1224 913 170 0 0 chr6 83802774 83802921 -65714116 + B1_Mm SINE Alu 1 147 0 6 1224 1192 40 0 39 chr6 83802925 83803080 -65713957 + B1_Mur3 SINE Alu 1 149 0 6 1224 252 0 0 0 chr6 83803080 83803108 -65713929 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1224 231 140 0 0 chr6 83803134 83803184 -65713853 + (A)n Simple_repeat Simple_repeat 1 50 0 6 1224 585 147 0 0 chr6 83804268 83804377 -65712660 + (CA)n Simple_repeat Simple_repeat 1 109 0 6 1224 261 0 0 0 chr6 83804381 83804410 -65712627 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1224 429 20 0 0 chr6 83804820 83804870 -65712167 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1224 2822 113 57 41 chr6 83805079 83805588 -65711449 + RMER15 LTR ERVL 23 539 -36 6 1224 228 297 96 59 chr6 83805604 83805740 -65711297 - L2b LINE L2 -5 3370 3230 6 1224 424 240 30 10 chr6 83805863 83805964 -65711073 + B1F1 SINE Alu 1 103 -46 6 1224 653 242 121 22 chr6 83806220 83806429 -65710608 + B4A SINE B4 1 230 -62 6 1224 840 188 0 0 chr6 83806429 83806573 -65710464 + B1_Mur2 SINE Alu 1 144 -5 6 1224 653 242 121 22 chr6 83806573 83806587 -65710450 + B4A SINE B4 231 246 -46 6 1224 180 0 0 0 chr6 83806614 83806634 -65710403 + (GA)n Simple_repeat Simple_repeat 1 20 0 6 1224 338 250 50 0 chr6 83806728 83806808 -65710229 + B4 SINE B4 1 84 -208 6 1224 183 326 31 21 chr6 83807430 83807527 -65709510 - L2b LINE L2 -1361 2058 1961 6 1224 450 290 111 9 chr6 83807859 83808085 -65708952 + Charlie1b DNA MER1_type 1 249 -274 6 1224 24 0 0 0 chr6 83808088 83808112 -65708925 + AT_rich Low_complexity Low_complexity 1 24 0 6 1224 228 67 0 0 chr6 83808116 83808146 -65708891 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 6 1224 1166 63 6 0 chr6 83808146 83808304 -65708733 - B2_Mm1t SINE B2 -33 160 2 6 1224 333 0 0 0 chr6 83808528 83808565 -65708472 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1224 474 18 0 0 chr6 83808565 83808619 -65708418 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1224 747 0 0 0 chr6 83808750 83808833 -65708204 + (TTC)n Simple_repeat Simple_repeat 2 84 0 6 1224 426 165 456 0 chr6 83808835 83808938 -65708099 - B1_Mur4 SINE Alu 0 150 1 6 1224 1197 61 0 0 chr6 83810484 83810631 -65706406 + B1_Mm SINE Alu 1 147 0 6 1224 311 268 24 89 chr6 83810650 83810678 -65706359 - MT2B LTR ERVL -318 283 255 6 1224 359 73 0 18 chr6 83810678 83810734 -65706303 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 1224 653 87 0 0 chr6 83810735 83810827 -65706210 - B1_Mm SINE Alu -50 97 6 6 1224 463 193 278 57 chr6 83811122 83811298 -65705739 - B3 SINE B2 -1 215 1 6 1224 253 294 142 38 chr6 83811347 83811453 -65705584 - ID_B1 SINE B4 -18 206 90 6 1224 471 116 55 55 chr6 83811481 83811572 -65705465 + ORR1A3 LTR MaLR 17 107 -219 6 1224 1365 69 46 0 chr6 83811572 83811745 -65705292 + B2_Mm2 SINE B2 1 181 -14 6 1224 315 126 392 0 chr6 83811811 83811913 -65705124 + B2_Mm2 SINE B2 47 188 -7 6 1224 254 200 127 14 chr6 83812290 83812361 -65704676 - LTR85a LTR Gypsy? -585 117 39 6 1224 764 299 118 86 chr6 83812859 83813130 -65703907 - L1MB8 LINE L1 -2 6176 5935 6 1224 1165 68 0 0 chr6 83813130 83813276 -65703761 - B1_Mus1 SINE Alu -2 146 1 6 1224 764 299 118 86 chr6 83813276 83813658 -65703379 - L1MB8 LINE L1 -244 5934 5502 6 1224 437 257 7 9 chr6 83813658 83813795 -65703242 - MLT1B LTR MaLR 0 467 288 6 1224 322 290 0 16 chr6 83813801 83813925 -65703112 - B1F SINE Alu 0 120 2 6 1224 258 200 128 58 chr6 83813954 83814093 -65702944 - MLT1B LTR MaLR -217 173 1 6 1224 37 0 0 0 chr6 83814148 83814185 -65702852 + AT_rich Low_complexity Low_complexity 1 37 0 6 1224 698 106 18 0 chr6 83814243 83814356 -65702681 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 6 1224 249 316 0 13 chr6 83814642 83814719 -65702318 - MLT1A1 LTR MaLR -267 141 66 6 1224 285 182 18 0 chr6 83814775 83814830 -65702207 - L1MC LINE L1 -743 5403 5348 6 1224 271 256 43 36 chr6 83814959 83815097 -65701940 - Lx8 LINE L1 -2 7471 7333 6 1224 349 109 31 0 chr6 83815097 83815161 -65701876 + (TC)n Simple_repeat Simple_repeat 2 67 0 6 1224 1084 82 0 26 chr6 83815165 83815316 -65701721 - B1_Mm SINE Alu 0 147 1 6 1224 710 214 13 122 chr6 83815635 83815742 -65701295 + B4 SINE B4 2 85 -207 6 1224 1494 78 5 0 chr6 83815742 83815934 -65701103 + B2_Mm1t SINE B2 1 193 0 6 1224 710 214 13 122 chr6 83815934 83816055 -65700982 + B4 SINE B4 86 205 -87 6 1224 260 258 91 0 chr6 83816137 83816203 -65700834 + RSINE1 SINE B4 84 155 -10 6 1224 1285 77 21 27 chr6 83816367 83816555 -65700482 - B2_Mm2 SINE B2 -7 188 2 6 1224 336 243 16 65 chr6 83817780 83817903 -65699134 + BC1_Mm scRNA scRNA 1 117 -35 6 1224 459 0 0 0 chr6 83818290 83818341 -65698696 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1224 1212 61 0 0 chr6 83818583 83818730 -65698307 + B1_Mus1 SINE Alu 2 148 0 6 1224 213 139 28 0 chr6 83818730 83818766 -65698271 + A-rich Low_complexity Low_complexity 2 38 0 6 1224 1637 169 74 65 chr6 83818939 83819306 -65697731 + ORR1D1 LTR MaLR 5 374 0 6 1224 924 265 14 0 chr6 83819523 83819734 -65697303 + B3 SINE B2 3 216 0 6 1224 620 185 101 22 chr6 83819761 83819899 -65697138 + B1_Mur3 SINE Alu 1 149 0 6 1224 482 205 0 0 chr6 83819931 83820014 -65697023 + B1_Mur4 SINE Alu 6 88 -62 6 1224 390 129 0 0 chr6 83820034 83820096 -65696941 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1224 336 236 0 14 chr6 83820126 83820199 -65696838 + B3 SINE B2 59 130 -86 6 1224 1010 256 129 11 chr6 83820451 83820822 -65696215 - MTD LTR MaLR 0 419 5 6 1224 652 243 45 11 chr6 83821467 83821646 -65695391 - B3 SINE B2 -5 211 27 6 1224 852 123 0 8 chr6 83821671 83821802 -65695235 - B3 SINE B2 -86 130 1 6 1224 1180 124 11 0 chr6 83821889 83822067 -65694970 - B2_Mm1t SINE B2 -12 181 2 7 1224 332 349 34 7 chr6 83822159 83822306 -65694731 - MER68 LTR ERVL 0 563 413 7 1224 804 26 8 50 chr6 83822356 83822476 -65694561 + B1_Mus2 SINE Alu 33 147 0 7 1224 321 185 0 0 chr6 83822476 83822541 -65694496 + A-rich Low_complexity Low_complexity 1 65 0 7 1224 472 309 70 61 chr6 83822541 83822758 -65694279 + Charlie8 DNA MER1_type 1686 1915 -513 7 1224 1427 251 36 39 chr6 83822758 83823115 -65693922 - ORR1E LTR MaLR -3 356 1 7 1224 472 309 70 61 chr6 83823115 83823256 -65693781 + Charlie8 DNA MER1_type 1916 2047 -381 7 1224 315 0 0 0 chr6 83823264 83823299 -65693738 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1224 270 236 0 18 chr6 83823470 83823526 -65693511 - RSINE1 SINE B4 -96 69 15 7 1224 921 60 14 29 chr6 83823566 83823704 -65693333 + B1_Mm SINE Alu 2 137 -10 7 1224 462 18 0 0 chr6 83823704 83823759 -65693278 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 7 1224 236 324 33 53 chr6 83823780 83823930 -65693107 + Charlie8 DNA MER1_type 2079 2225 -203 7 1224 443 215 40 122 chr6 83823927 83824075 -65692962 - B1F1 SINE Alu 0 149 14 7 1224 219 196 143 0 chr6 83824027 83824083 -65692954 - B4A SINE B4 -146 146 83 7 1224 707 196 79 6 chr6 83825577 83825741 -65691296 - MTD LTR MaLR 0 419 244 7 1224 988 232 22 33 chr6 83825824 83826106 -65690931 - MTD LTR MaLR -134 273 15 7 1224 183 80 0 0 chr6 83826110 83826135 -65690902 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 7 1224 220 211 0 37 chr6 83826227 83826261 -65690776 + T-rich Low_complexity Low_complexity 22 55 0 7 1224 1002 15 127 30 chr6 83826261 83826395 -65690642 - B1_Mm SINE Alu 0 147 1 7 1224 220 211 0 37 chr6 83826395 83826414 -65690623 + T-rich Low_complexity Low_complexity 4 21 0 7 1224 619 184 40 0 chr6 83826587 83826712 -65690325 + B1_Mur1 SINE Alu 11 140 -9 7 1224 532 268 55 8 chr6 83826729 83826922 -65690115 + L1M4 LINE L1 4593 4795 -1351 7 1224 346 241 43 26 chr6 83826995 83827110 -65689927 + PB1D10 SINE Alu 1 117 0 7 1224 2981 182 60 6 chr6 83827312 83827858 -65689179 - Lx5 LINE L1 0 7050 6475 7 1224 23 0 0 0 chr6 83828034 83828057 -65688980 + AT_rich Low_complexity Low_complexity 1 23 0 7 1224 805 199 0 7 chr6 83828260 83828407 -65688630 + B1_Mur4 SINE Alu 5 150 0 7 1224 582 54 0 0 chr6 83828419 83828493 -65688544 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 7 1224 1188 186 45 26 chr6 83828525 83828790 -65688247 + Lx8 LINE L1 6878 7147 -326 7 1224 507 241 0 26 chr6 83829049 83829164 -65687873 + B1_Mur1 SINE Alu 9 120 -29 7 1224 432 0 0 0 chr6 83829168 83829216 -65687821 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1224 224 232 36 0 chr6 83829216 83829272 -65687765 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1224 379 318 68 0 chr6 83829292 83829424 -65687613 + B3A SINE B2 1 141 -57 7 1224 396 0 0 0 chr6 83829427 83829471 -65687566 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1224 351 60 0 0 chr6 83829568 83829618 -65687419 + (TTTC)n Simple_repeat Simple_repeat 1 50 0 7 1224 1282 94 61 0 chr6 83829618 83829798 -65687239 - B2_Mm2 SINE B2 0 195 5 7 1224 446 291 83 28 chr6 83830333 83830478 -65686559 + B3A SINE B2 2 154 -44 7 1224 1079 35 0 14 chr6 83830477 83830621 -65686416 + B1_Mm SINE Alu 6 147 0 7 1224 311 118 91 13 chr6 83830677 83830754 -65686283 + Lx9 LINE L1 7560 7642 -2 7 1224 213 39 0 0 chr6 83830767 83830793 -65686244 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 7 1224 1050 96 6 6 chr6 83830793 83830951 -65686086 - B2_Mm1a SINE B2 -35 158 1 7 1224 32 0 0 0 chr6 83830952 83830984 -65686053 + AT_rich Low_complexity Low_complexity 1 32 0 7 1224 255 353 78 0 chr6 83831008 83831161 -65685876 + MIR SINE MIR 3 167 -95 7 1224 267 160 0 39 chr6 83831241 83831293 -65685744 + PB1D9 SINE Alu 14 63 -57 7 1224 1344 226 43 100 chr6 83831298 83831760 -65685277 + BGLII_B LTR ERVK 6 441 0 7 1224 424 189 43 22 chr6 83831760 83831850 -65685187 + B1_Mur2 SINE Alu 58 149 0 7 1224 696 199 0 54 chr6 83831867 83832016 -65685021 + RSINE1 SINE B4 3 143 -22 7 1224 400 253 66 0 chr6 83832052 83832143 -65684894 + B4 SINE B4 1 97 -195 7 1224 350 105 0 66 chr6 83832146 83832207 -65684830 + ORR1A2 LTR MaLR 1 57 -270 7 1224 1132 50 14 0 chr6 83832220 83832360 -65684677 + B1_Mus1 SINE Alu 1 142 -6 7 1224 189 0 0 0 chr6 83832364 83832385 -65684652 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1224 1557 118 4 16 chr6 83832388 83832646 -65684391 + ORR1A2 LTR MaLR 32 286 -41 7 1224 455 140 3 0 chr6 83832658 83832741 -65684296 + B2_Mm2 SINE B2 3 87 -111 7 1224 693 120 9 0 chr6 83832768 83832876 -65684161 + RMER10B LTR ERVL 290 398 0 7 1224 24 32 0 0 chr6 83833319 83833350 -65683687 + AT_rich Low_complexity Low_complexity 1 31 0 7 1224 353 350 10 0 chr6 83833517 83833620 -65683417 + PB1 SINE Alu 2 105 -22 7 1224 369 0 0 0 chr6 83833626 83833667 -65683370 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1224 289 365 32 13 chr6 83834058 83834216 -65682821 + L2 LINE L2 2279 2439 -980 7 1224 356 330 18 9 chr6 83834604 83834714 -65682323 - B4 SINE B4 0 292 182 7 1224 1202 97 37 11 chr6 83834716 83834904 -65682133 - B2_Mm2 SINE B2 -1 194 2 7 1224 274 272 25 0 chr6 83835716 83835797 -65681240 - ORR1B2 LTR MaLR -41 554 472 7 1224 392 246 114 41 chr6 83836097 83836220 -65680817 + RMER15 LTR ERVL 444 575 0 7 1224 479 332 114 24 chr6 83836264 83836474 -65680563 - ORR1B2 LTR MaLR -203 392 164 7 1224 243 274 137 0 chr6 83836645 83836718 -65680319 + MER5A DNA MER1_type 71 153 -36 7 1224 471 162 75 8 chr6 83836681 83836794 -65680243 - PB1D9 SINE Alu -8 141 24 7 1224 474 201 73 36 chr6 83836839 83837004 -65680033 - L1M4b LINE L1 -5803 1531 1361 7 1224 720 300 101 35 chr6 83837207 83837663 -65679374 - L1M4b LINE L1 -6293 1041 556 7 1224 1165 54 0 0 chr6 83837748 83837895 -65679142 - B1_Mm SINE Alu 0 147 1 7 1224 451 118 29 0 chr6 83838084 83838152 -65678885 - RLTR23 LTR ERV1 0 430 361 7 1224 1336 196 17 28 chr6 83838153 83838703 -65678334 - RMER17C LTR ERVK 0 410 1 7 1224 2249 119 5 81 chr6 83838703 83839097 -65677940 - RLTR23 LTR ERV1 -66 364 1 7 1224 288 233 81 14 chr6 83839538 83839612 -65677425 - ID4_ SINE ID -2 81 3 7 1224 4835 186 125 51 chr6 83839683 83840901 -65676136 - ORR1B2-int LTR MaLR -199 1310 5 7 1224 575 100 0 0 chr6 83840905 83840985 -65676052 - ORR1B2 LTR MaLR -287 80 1 7 1224 1029 209 40 0 chr6 83841331 83841532 -65675505 + ORR1D2 LTR MaLR 3 211 -159 7 1224 25 0 0 0 chr6 83841577 83841602 -65675435 + AT_rich Low_complexity Low_complexity 1 25 0 7 1224 1104 31 0 0 chr6 83841605 83841735 -65675302 + B1_Mus1 SINE Alu 1 130 -18 7 1224 1951 170 67 46 chr6 83842903 83843009 -65674028 - RMER10A LTR ERVL 0 442 349 7 1224 4054 72 73 2 chr6 83843009 83843554 -65673483 + MT2B2 LTR ERVL 1 584 0 7 1224 1951 170 67 46 chr6 83843554 83843879 -65673158 - RMER10A LTR ERVL -94 348 3 7 1224 261 347 53 90 chr6 83843908 83843940 -65673097 - MLT1F1 LTR MaLR -78 491 462 7 1224 1330 79 21 16 chr6 83843940 83844132 -65672905 + B2_Mm1t SINE B2 1 193 0 7 1224 261 347 53 90 chr6 83844132 83844232 -65672805 - MLT1F1 LTR MaLR -108 461 364 7 1224 582 173 0 55 chr6 83844306 83844416 -65672621 - MTC LTR MaLR -8 413 310 7 1224 631 259 38 60 chr6 83844402 83844482 -65672555 - MTC LTR MaLR -240 181 99 7 1224 1114 82 7 0 chr6 83844482 83844628 -65672409 - B1_Mus2 SINE Alu 0 147 1 7 1224 631 259 38 60 chr6 83844628 83844732 -65672305 - MTC LTR MaLR -323 98 1 7 1224 848 242 88 0 chr6 83844766 83844960 -65672077 - B3 SINE B2 -5 211 1 7 1224 842 256 23 14 chr6 83844987 83845201 -65671836 - B3 SINE B2 0 216 1 7 1224 29 0 0 0 chr6 83845217 83845246 -65671791 + AT_rich Low_complexity Low_complexity 1 29 0 7 1224 2965 143 27 12 chr6 83845246 83845726 -65671311 - Lx4A LINE L1 0 7058 6572 7 1224 257 0 0 0 chr6 83845726 83845757 -65671280 + Lx5 LINE L1 4425 4455 -1422 7 1224 1246 27 7 0 chr6 83845757 83845903 -65671134 + B1_Mm SINE Alu 1 147 0 7 1224 5393 75 50 2 chr6 83845922 83846736 -65670301 + Lx5 LINE L1 4439 5291 -586 7 1224 1152 51 0 0 chr6 83846736 83846874 -65670163 + B1_Mus1 SINE Alu 2 139 -9 7 1224 2806 159 151 28 chr6 83847353 83848452 -65668585 + Lx5 LINE L1 5283 6516 -534 7 1224 504 353 58 5 chr6 83848498 83848706 -65668331 - MLT1F1 LTR MaLR -345 224 6 7 1224 1072 203 29 10 chr6 83848879 83849088 -65667949 - B3 SINE B2 0 216 4 7 1224 640 189 17 24 chr6 83849418 83849616 -65667421 - ORR1B1 LTR MaLR 0 421 159 7 1224 1695 242 228 102 chr6 83849839 83850603 -65666434 - RMER13A LTR ERVK 0 860 1 7 1224 826 160 0 53 chr6 83850603 83850749 -65666288 - ORR1B1 LTR MaLR -110 284 147 7 1224 706 198 36 23 chr6 83851096 83851264 -65665773 - MTD LTR MaLR -14 405 185 7 1224 412 340 58 28 chr6 83851258 83851510 -65665527 - MTD LTR MaLR -137 284 28 7 1224 217 290 0 55 chr6 83852272 83852345 -65664692 + polypyrimidine Low_complexity Low_complexity 2 70 0 7 1224 635 294 155 18 chr6 83852376 83852705 -65664332 + L2a LINE L2 3041 3414 -12 7 1224 574 283 97 51 chr6 83852797 83853054 -65663983 + MLT1B LTR MaLR 29 297 -93 7 1224 437 274 47 0 chr6 83853275 83853381 -65663656 + PB1D7 SINE Alu 10 120 0 7 1224 1594 175 92 3 chr6 83853542 83853835 -65663202 + ORR1B2 LTR MaLR 3 321 -46 7 1224 1223 22 0 0 chr6 83853836 83853975 -65663062 + B1_Mm SINE Alu 3 141 -6 7 1224 1995 158 63 69 chr6 83853992 83854453 -65662584 - RMER6B LTR ERVK 0 461 4 7 1224 293 139 0 0 chr6 83854501 83854544 -65662493 + MLT1B LTR MaLR 338 380 -10 7 1224 224 400 75 34 chr6 83854544 83854839 -65662198 + L2a LINE L2 2935 3241 -185 7 1224 255 330 189 50 chr6 83855096 83855476 -65661561 - MER74B LTR ERVL -165 457 25 7 1224 453 284 48 61 chr6 83855612 83855777 -65661260 - RSINE1 SINE B4 0 165 3 7 1224 1318 229 45 11 chr6 83855977 83856264 -65660773 - MTD LTR MaLR -15 404 108 7 1224 292 368 43 9 chr6 83856262 83856377 -65660660 + B3A SINE B2 55 173 -25 7 1224 235 204 130 0 chr6 83856448 83856502 -65660535 - MTD LTR MaLR -343 78 18 7 1224 1874 149 56 77 chr6 83856582 83856928 -65660109 - ORR1C2 LTR MaLR 0 384 46 7 1224 2711 56 24 0 chr6 83856928 83856987 -65660050 - ORR1A1 LTR MaLR 0 346 288 7 1224 306 0 0 0 chr6 83856987 83857021 -65660016 + (CAA)n Simple_repeat Simple_repeat 2 35 0 7 1224 2711 56 24 0 chr6 83857021 83857299 -65659738 - ORR1A1 LTR MaLR -59 287 2 7 1224 1874 149 56 77 chr6 83857299 83857344 -65659693 - ORR1C2 LTR MaLR -339 45 1 7 1224 1133 206 102 4 chr6 83857345 83857589 -65659448 - ORR1C2-int LTR MaLR 0 1370 1103 7 1224 3074 204 26 24 chr6 83857580 83858306 -65658731 - ORR1C2-int LTR MaLR -1001 962 3 7 1224 1410 196 67 80 chr6 83858306 83858695 -65658342 - ORR1C2 LTR MaLR 0 384 1 7 1224 245 158 0 0 chr6 83858856 83858894 -65658143 - tRNA-Gly-GGA tRNA tRNA -37 38 1 8 1224 450 291 86 38 chr6 83858938 83859124 -65657913 + B3A SINE B2 3 197 -1 8 1224 369 301 51 36 chr6 83859214 83859352 -65657685 - B1F1 SINE Alu -9 140 1 8 1224 207 0 0 0 chr6 83859417 83859440 -65657597 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1224 251 151 27 0 chr6 83859583 83859656 -65657381 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 8 1224 753 222 73 1 chr6 83859681 83859862 -65657175 + B3 SINE B2 1 192 -6 8 1224 268 23 68 0 chr6 83860120 83860164 -65656873 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 1224 956 102 8 0 chr6 83860168 83860296 -65656741 + B1_Mus1 SINE Alu 2 130 -18 8 1224 427 302 92 26 chr6 83860345 83860498 -65656539 + RSINE1 SINE B4 3 165 0 8 1224 4876 193 30 46 chr6 83860857 83861789 -65655248 - MYSERV-int LTR ERVK 0 6550 5620 8 1224 767 90 22 8 chr6 83861789 83861923 -65655114 + L1_Mus3 LINE L1 6501 6636 -2 8 1224 4876 193 30 46 chr6 83861923 83862241 -65654796 - MYSERV-int LTR ERVK -931 5619 5320 8 1224 549 222 57 21 chr6 83862241 83862436 -65654601 - RMER4A LTR ERVK -28 557 251 8 1224 1174 208 13 4 chr6 83862440 83862677 -65654360 - MYSERV-int LTR ERVK -1428 5122 4884 8 1224 930 170 0 0 chr6 83862676 83862835 -65654202 + MERVL_2A-int LTR ERVL 3662 3820 -1941 8 1224 1031 131 0 0 chr6 83862847 83863007 -65654030 - MERVL-int LTR ERVL -2494 2991 2832 8 1224 228 158 0 0 chr6 83863026 83863083 -65653954 + T-rich Low_complexity Low_complexity 1 57 0 8 1224 1064 50 35 7 chr6 83863084 83863226 -65653811 - B1_Mus1 SINE Alu -1 147 2 8 1224 1403 53 10 26 chr6 83863438 83863630 -65653407 - B2_Mm2 SINE B2 -5 190 2 8 1224 652 191 35 14 chr6 83863675 83863818 -65653219 - B1_Mus1 SINE Alu 0 148 3 8 1224 766 127 142 0 chr6 83863849 83863983 -65653054 + B2_Mm1a SINE B2 2 154 -39 8 1224 405 214 0 45 chr6 83863983 83864071 -65652966 + B1F2 SINE Alu 5 88 -61 8 1224 266 336 71 0 chr6 83865985 83866098 -65650939 + MIRb SINE MIR 16 136 -132 8 1224 1582 31 5 10 chr6 83866106 83866300 -65650737 - B2_Mm1t SINE B2 0 193 1 8 1224 1150 75 0 0 chr6 83866427 83866574 -65650463 - B1_Mm SINE Alu 0 147 1 8 1224 333 303 9 44 chr6 83866823 83866937 -65650100 - B1F SINE Alu -26 123 14 8 1224 308 234 93 10 chr6 83867673 83867766 -65649271 - PB1D10 SINE Alu 0 120 24 8 1224 487 245 66 0 chr6 83868058 83868164 -65648873 + RSINE1 SINE B4 18 130 -35 8 1224 714 231 149 6 chr6 83868457 83868631 -65648406 - B3 SINE B2 -9 207 9 8 1224 1161 42 14 7 chr6 83868659 83868804 -65648233 + B1_Mus2 SINE Alu 2 147 0 8 1224 272 48 24 0 chr6 83868804 83868846 -65648191 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 8 1224 1113 30 8 0 chr6 83869282 83869413 -65647624 + B1_Mus2 SINE Alu 1 132 -15 8 1224 416 320 120 47 chr6 83869494 83869795 -65647242 - L1MC4 LINE L1 -145 7897 7575 8 1224 1386 95 16 0 chr6 83869824 83870013 -65647024 - B2_Mm2 SINE B2 -2 193 2 8 1224 331 279 108 21 chr6 83870115 83870309 -65646728 - L1MC4 LINE L1 -738 7304 7094 8 1224 234 0 0 0 chr6 83870434 83870460 -65646577 + (TAA)n Simple_repeat Simple_repeat 2 27 0 8 1224 300 27 0 0 chr6 83870826 83870863 -65646174 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 8 1224 872 74 82 0 chr6 83870863 83870985 -65646052 - B1_Mm SINE Alu -11 136 5 8 1224 777 172 34 14 chr6 83871062 83871209 -65645828 - URR1A DNA MER1_type 0 226 77 8 1224 234 303 116 54 chr6 83871773 83871902 -65645135 - B4A SINE B4 -43 249 113 8 1224 542 234 8 38 chr6 83871971 83872104 -65644933 - B4 SINE B4 -45 247 119 8 1224 2886 158 109 84 chr6 83872652 83873441 -65643596 - RMER17D2 LTR ERVK 0 809 1 8 1224 239 95 48 0 chr6 83873626 83873668 -65643369 + (TATG)n Simple_repeat Simple_repeat 4 47 0 8 1224 429 318 7 39 chr6 83873670 83873824 -65643213 - RSINE1 SINE B4 -13 152 4 8 1224 218 321 18 18 chr6 83874013 83874070 -65642967 - RSINE1 SINE B4 -104 61 5 8 1224 660 260 42 63 chr6 83874344 83874533 -65642504 + B3A SINE B2 3 187 -11 8 1224 880 165 0 14 chr6 83874561 83874702 -65642335 + B1_Mur4 SINE Alu 1 139 -11 8 1224 330 26 0 0 chr6 83874702 83874741 -65642296 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 8 1224 371 375 23 0 chr6 83874833 83874961 -65642076 - B1F1 SINE Alu -16 133 3 8 1224 339 275 130 11 chr6 83874961 83875051 -65641986 - PB1 SINE Alu -14 113 13 8 1224 651 231 28 23 chr6 83875156 83875312 -65641725 + B1_Mur4 SINE Alu 2 148 -2 8 1224 803 228 68 19 chr6 83875572 83875778 -65641259 - B3 SINE B2 0 216 1 8 1224 1150 64 0 0 chr6 83876097 83876238 -65640799 + B1_Mm SINE Alu 2 142 -5 8 1224 180 0 0 0 chr6 83876244 83876264 -65640773 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1224 333 0 0 0 chr6 83876288 83876325 -65640712 + (CATA)n Simple_repeat Simple_repeat 4 40 0 8 1224 1443 70 5 0 chr6 83876351 83876537 -65640500 - B2_Mm1a SINE B2 -6 187 1 8 1224 410 306 54 27 chr6 83877418 83877529 -65639508 + B3A SINE B2 51 164 -34 8 1224 225 326 23 0 chr6 83877872 83877958 -65639079 + MIR SINE MIR 175 262 0 8 1224 258 263 35 0 chr6 83881179 83881236 -65635801 + tRNA-Ala-GCY_ tRNA tRNA 1 59 -16 8 1224 455 352 96 50 chr6 83882395 83882655 -65634382 + B4 SINE B4 3 274 -18 8 1224 335 219 52 95 chr6 83883127 83883243 -65633794 - RSINE1 SINE B4 0 165 55 8 1224 349 255 103 28 chr6 83883591 83883736 -65633301 - Charlie8 DNA MER1_type -2263 165 10 8 1224 1202 79 12 0 chr6 83885380 83885545 -65631492 - B2_Mm1t SINE B2 -26 167 1 8 1224 336 174 376 11 chr6 83885545 83885639 -65631398 - B2_Mm2 SINE B2 -20 175 47 8 1224 804 135 170 0 chr6 83885693 83885834 -65631203 - B2_Mm1t SINE B2 -14 179 15 8 2 972 232 15 10 chr6 83886024 83886229 -65630808 - B3 SINE B2 -7 209 4 8 1225 1257 38 88 0 chr6 83886342 83886501 -65630536 + B2_Mm1a SINE B2 3 175 -18 8 1225 1291 77 49 0 chr6 83886555 83886711 -65630326 + B2_Mm1t SINE B2 1 160 -33 8 1225 279 0 0 0 chr6 83886711 83886742 -65630295 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 8 1225 1291 77 49 0 chr6 83886742 83886768 -65630269 + B2_Mm1t SINE B2 161 191 -2 8 1225 314 189 137 69 chr6 83886847 83886863 -65630174 - PB1D10 SINE Alu -3 114 104 8 1225 324 0 0 0 chr6 83886863 83886899 -65630138 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 8 1225 314 189 137 69 chr6 83886899 83886984 -65630053 - PB1D10 SINE Alu -14 103 6 8 1225 402 185 62 24 chr6 83887154 83887265 -65629772 + B1_Mur3 SINE Alu 9 109 -40 8 1225 252 43 0 61 chr6 83887739 83887788 -65629249 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 1225 221 302 65 40 chr6 83887945 83888069 -65628968 - MIR SINE MIR -27 235 109 8 1225 1147 51 105 33 chr6 83888154 83888335 -65628702 - B2_Mm2 SINE B2 0 195 2 8 1225 313 333 63 53 chr6 83888453 83888643 -65628394 - L1MC4 LINE L1 -202 7840 7649 8 1225 1192 21 14 0 chr6 83888971 83889114 -65627923 - B1_Mus2 SINE Alu -2 145 1 8 1225 878 151 38 0 chr6 83889148 83889307 -65627730 + URR1B DNA MER1_type 61 225 0 8 1225 409 238 52 44 chr6 83889186 83889322 -65627715 - CYRA11_Mm Unknown Y-chromosome -321 296 160 8 1225 774 0 0 0 chr6 83889461 83889547 -65627490 + (TCTCC)n Simple_repeat Simple_repeat 4 89 0 8 1225 437 282 25 25 chr6 83889569 83889689 -65627348 - B1_Mur1 SINE Alu -1 148 29 8 1225 258 307 107 10 chr6 83889840 83889951 -65627086 - B3 SINE B2 0 216 96 8 1225 1368 81 0 16 chr6 83889975 83890164 -65626873 + B2_Mm2 SINE B2 2 187 -8 8 1225 872 298 39 25 chr6 83890297 83890579 -65626458 - B4 SINE B4 -4 288 3 8 1225 329 372 8 58 chr6 83890593 83890630 -65626407 - ID_B1 SINE B4 -24 200 166 8 1225 1244 108 107 5 chr6 83890630 83890835 -65626202 - URR1A DNA MER1_type 0 226 1 8 1225 329 372 8 58 chr6 83890835 83890917 -65626120 - ID_B1 SINE B4 -59 165 87 8 1225 342 0 0 0 chr6 83891294 83891332 -65625705 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1225 777 62 18 0 chr6 83891332 83891445 -65625592 - B1_Mus1 SINE Alu -32 116 2 8 1225 500 230 83 45 chr6 83891522 83891544 -65625493 - B1_Mus1 SINE Alu -2 146 119 8 1225 234 62 0 0 chr6 83891544 83891576 -65625461 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 8 1225 519 221 71 5 chr6 83891576 83891687 -65625350 - B1_Mur1 SINE Alu -30 118 7 8 1225 387 0 0 0 chr6 83892157 83892200 -65624837 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 8 1225 477 340 13 0 chr6 83892229 83892388 -65624649 - RSINE1 SINE B4 -2 163 3 8 1225 487 254 8 33 chr6 83892417 83892539 -65624498 + PB1D7 SINE Alu 1 119 -1 8 1225 541 277 67 47 chr6 83892549 83892742 -65624295 + B3A SINE B2 2 198 0 8 1225 441 265 10 30 chr6 83893331 83893432 -65623605 + ID_B1 SINE B4 92 190 -34 8 1225 757 32 0 0 chr6 83893517 83893612 -65623425 - B1_Mus2 SINE Alu -8 139 45 8 1225 296 194 67 40 chr6 83893553 83893628 -65623409 - RLTR25A LTR ERVK -521 582 506 8 1225 334 270 152 41 chr6 83893816 83894013 -65623024 + Charlie1a DNA MER1_type 1040 1258 -197 8 1225 296 203 235 30 chr6 83894026 83894158 -65622879 + Charlie1a DNA MER1_type 1292 1450 -5 8 1225 263 98 0 0 chr6 83895544 83895585 -65621452 - B2_Mm2 SINE B2 -152 43 3 8 1225 354 175 0 81 chr6 83895683 83895770 -65621267 - PB1D9 SINE Alu -2 118 39 8 1225 227 93 23 0 chr6 83895770 83895813 -65621224 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 8 1225 301 312 108 39 chr6 83896533 83896663 -65620374 - MER58B DNA MER1_type -23 318 180 8 1225 314 136 212 0 chr6 83896860 83896926 -65620111 + BC1_Mm scRNA scRNA 8 87 -65 8 1225 477 248 13 79 chr6 83897233 83897382 -65619655 - B3 SINE B2 -11 205 1 9 1225 279 278 93 0 chr6 83897651 83897748 -65619289 + ID_B1 SINE B4 115 220 -4 9 1225 27 0 0 0 chr6 83898721 83898748 -65618289 + AT_rich Low_complexity Low_complexity 1 27 0 9 1225 299 267 136 28 chr6 83898805 83898911 -65618126 - B1F SINE Alu 0 117 1 9 1225 295 344 107 23 chr6 83898911 83899036 -65618001 + RSINE1 SINE B4 20 155 -10 9 1225 24 32 0 0 chr6 83899048 83899079 -65617958 + AT_rich Low_complexity Low_complexity 1 31 0 9 1225 381 136 0 0 chr6 83899205 83899271 -65617766 + (TA)n Simple_repeat Simple_repeat 2 67 0 9 1225 450 0 0 0 chr6 83899291 83899341 -65617696 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1225 218 338 26 13 chr6 83899671 83899749 -65617288 - RSINE1 SINE B4 -85 80 2 9 1225 794 221 28 57 chr6 83899960 83900137 -65616900 - B3 SINE B2 -30 186 15 9 1225 23 33 0 0 chr6 83900143 83900173 -65616864 + AT_rich Low_complexity Low_complexity 1 30 0 9 1225 213 318 0 43 chr6 83900269 83900338 -65616699 - B4A SINE B4 -224 68 3 9 1225 439 119 290 60 chr6 83900368 83900529 -65616508 - B2_Mm2 SINE B2 -1 194 1 9 1225 979 176 5 69 chr6 83900537 83900726 -65616311 - B2_Mm1t SINE B2 -14 179 3 9 1225 524 323 78 11 chr6 83900814 83901042 -65615995 + Tigger7 DNA MER2_type 30 273 -2218 9 1225 3568 179 147 29 chr6 83901060 83901236 -65615801 - Lx9 LINE L1 -6 7638 7437 9 1225 2904 90 18 0 chr6 83901236 83901636 -65615401 - MTB_Mm LTR MaLR 0 407 1 9 1225 3568 179 147 29 chr6 83901636 83902362 -65614675 - Lx9 LINE L1 -208 7436 6629 9 1225 250 146 0 59 chr6 83902373 83902424 -65614613 - PB1D9 SINE Alu -62 58 11 9 1225 287 272 165 0 chr6 83902441 83902544 -65614493 + Tigger7 DNA MER2_type 285 404 -2087 9 1225 544 257 181 4 chr6 83902532 83902759 -65614278 + Tigger7 DNA MER2_type 2229 2491 0 9 1225 477 298 78 63 chr6 83903397 83903666 -65613371 - B4A SINE B4 -15 277 5 9 1225 224 54 0 51 chr6 83903793 83903832 -65613205 + (TTG)n Simple_repeat Simple_repeat 2 38 0 9 1225 225 0 0 0 chr6 83903830 83903855 -65613182 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1225 749 236 7 0 chr6 83903855 83904003 -65613034 - B1_Mur3 SINE Alu 0 149 1 9 1225 345 287 59 34 chr6 83904399 83904518 -65612519 - B4 SINE B4 -164 128 7 9 1225 302 324 0 14 chr6 83904782 83904854 -65612183 - ID4 SINE ID -1 82 12 9 1225 672 287 7 0 chr6 83905165 83905315 -65611722 - ID_B1 SINE B4 -2 222 72 9 1225 386 239 8 0 chr6 83905964 83906098 -65610939 + (TA)n Simple_repeat Simple_repeat 1 135 0 9 1225 227 193 0 162 chr6 83906098 83906124 -65610913 - Tigger7 DNA MER2_type -100 2391 2368 9 1225 675 178 37 7 chr6 83906124 83906260 -65610777 - B1_Mur1 SINE Alu -9 140 1 9 1225 227 193 0 162 chr6 83906260 83906301 -65610736 - Tigger7 DNA MER2_type -124 2367 2335 9 1225 25 65 0 0 chr6 83907349 83907395 -65609642 + AT_rich Low_complexity Low_complexity 1 46 0 9 1225 204 40 0 0 chr6 83907613 83907638 -65609399 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1225 898 238 38 68 chr6 83907700 83907993 -65609044 + B4A SINE B4 3 286 -6 9 1225 25 75 0 0 chr6 83908258 83908311 -65608726 + AT_rich Low_complexity Low_complexity 1 53 0 9 1225 2209 146 86 22 chr6 83908461 83908868 -65608169 - RMER4B LTR ERVK 0 585 153 9 1225 600 81 0 0 chr6 83908921 83909008 -65608029 + (TG)n Simple_repeat Simple_repeat 1 87 0 9 1225 265 36 0 0 chr6 83909022 83909061 -65607976 - RMER4B LTR ERVK -427 39 1 9 1225 566 259 34 20 chr6 83909083 83909229 -65607808 + Lx6 LINE L1 7013 7160 -300 9 1225 399 132 0 0 chr6 83909259 83909327 -65607710 + (TCCCC)n Simple_repeat Simple_repeat 4 71 0 9 1225 975 90 0 0 chr6 83909332 83909465 -65607572 - B1_Mus1 SINE Alu -14 134 2 9 1225 1187 220 52 10 chr6 83909471 83909760 -65607277 + Lx6 LINE L1 7153 7453 -7 9 1225 544 308 34 29 chr6 83910226 83910433 -65606604 - ID_B1 SINE B4 -3 221 14 9 1225 1622 53 5 0 chr6 83910465 83910672 -65606365 + L1Md_T LINE L1 6375 6582 0 9 1225 231 114 0 0 chr6 83911101 83911136 -65605901 + (TTCTCC)n Simple_repeat Simple_repeat 3 37 0 9 1225 1037 221 166 38 chr6 83911547 83911866 -65605171 - ORR1D1 LTR MaLR -14 360 1 9 1225 226 266 172 0 chr6 83912382 83912446 -65604591 - ID4_ SINE ID -6 77 3 9 1225 750 258 0 26 chr6 83912559 83912714 -65604323 + B3 SINE B2 1 151 -65 9 1225 499 337 33 60 chr6 83912793 83913008 -65604029 + B3 SINE B2 6 214 -2 9 1225 274 127 118 48 chr6 83913258 83913333 -65603704 + L1MB7 LINE L1 6054 6137 -47 9 1225 1031 209 19 0 chr6 83913374 83913580 -65603457 - B3 SINE B2 -6 210 1 9 1225 1313 83 44 0 chr6 83913705 83913886 -65603151 - B2_Mm2 SINE B2 -5 190 2 9 1225 21 82 0 0 chr6 83914025 83914074 -65602963 + AT_rich Low_complexity Low_complexity 1 49 0 9 1225 521 27 53 13 chr6 83914119 83914194 -65602843 - B1_Mus2 SINE Alu -13 134 57 9 1225 306 129 113 0 chr6 83914189 83914251 -65602786 + B1_Mm SINE Alu 27 95 -52 9 1225 21 0 0 0 chr6 83914251 83914272 -65602765 + AT_rich Low_complexity Low_complexity 1 21 0 9 1225 603 344 48 38 chr6 83914295 83914609 -65602428 - MER44C DNA MER2_type 0 733 417 9 1225 717 284 142 32 chr6 83914719 83915028 -65602009 - Tigger7 DNA MER2_type -2053 438 96 9 1225 35 0 0 0 chr6 83915034 83915069 -65601968 + AT_rich Low_complexity Low_complexity 1 35 0 9 1225 406 208 175 4 chr6 83915194 83915300 -65601737 + PB1D9 SINE Alu 1 120 0 9 1225 23 33 0 0 chr6 83915491 83915521 -65601516 + AT_rich Low_complexity Low_complexity 1 30 0 9 1225 371 195 98 41 chr6 83916932 83917055 -65599982 - RLTR15 LTR ERVK -229 130 1 9 1225 644 266 59 0 chr6 83918131 83918300 -65598737 - B3A SINE B2 -16 182 4 9 1225 1202 41 7 0 chr6 83918385 83918531 -65598506 - B1_Mus2 SINE Alu 0 147 1 9 1225 1255 275 82 17 chr6 83918554 83919075 -65597962 - L1MB3 LINE L1 -35 6148 5594 9 1225 952 218 25 5 chr6 83919297 83919500 -65597537 + B3 SINE B2 2 208 -8 9 1225 922 132 0 0 chr6 83919787 83919923 -65597114 + B1_Mus1 SINE Alu 13 148 0 9 1225 1099 82 135 0 chr6 83920150 83920320 -65596717 + B2_Mm2 SINE B2 2 194 -1 9 1225 545 189 213 0 chr6 83920329 83920451 -65596586 + B1_Mur3 SINE Alu 2 149 0 9 1225 210 37 0 0 chr6 83920470 83920497 -65596540 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1225 314 323 147 21 chr6 83920702 83920797 -65596240 + PB1D10 SINE Alu 1 107 -10 9 1225 492 315 41 123 chr6 83921430 83921748 -65595289 - B4A SINE B4 0 292 1 9 1225 1214 130 16 0 chr6 83923407 83923592 -65593445 + B2_Mm2 SINE B2 2 189 -6 9 1225 572 261 60 0 chr6 83924359 83924493 -65592544 + B3 SINE B2 4 145 -71 9 1225 511 0 58 0 chr6 83924501 83924570 -65592467 + (CATA)n Simple_repeat Simple_repeat 4 76 0 9 1225 23 0 0 0 chr6 83928637 83928660 -65588377 + AT_rich Low_complexity Low_complexity 1 23 0 9 1225 552 256 25 0 chr6 83928709 83928830 -65588207 - RSINE1 SINE B4 -38 127 4 9 1225 252 59 0 0 chr6 83930286 83930320 -65586717 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 1225 505 261 59 44 chr6 83930320 83930456 -65586581 - B1_Mur1 SINE Alu -9 140 3 9 1225 435 264 147 0 chr6 83930460 83930589 -65586448 - B1F SINE Alu 0 149 2 9 1225 611 219 7 58 chr6 83930829 83930984 -65586053 + B1_Mus1 SINE Alu 1 147 -1 9 1225 204 98 57 38 chr6 83930987 83931040 -65585997 + GA-rich Low_complexity Low_complexity 5 58 0 9 1225 225 300 35 35 chr6 83931252 83931318 -65585719 + PB1D10 SINE Alu 2 66 -51 9 1225 1082 66 0 0 chr6 83931318 83931454 -65585583 + B1_Mus1 SINE Alu 1 136 -12 9 1225 429 20 0 0 chr6 83931454 83931504 -65585533 + (CAAAA)n Simple_repeat Simple_repeat 5 54 0 9 1225 225 300 35 35 chr6 83931504 83931550 -65585487 + PB1D10 SINE Alu 67 113 -4 9 1225 1098 124 161 0 chr6 83932577 83932770 -65584267 + URR1B DNA MER1_type 2 225 0 9 1225 289 254 219 8 chr6 83935526 83935645 -65581392 + B1_Mus2 SINE Alu 2 145 -2 9 1225 675 245 14 0 chr6 83935925 83936072 -65580965 + B1_Mur3 SINE Alu 1 149 0 9 1225 266 301 0 14 chr6 83936148 83936222 -65580815 - ID4_ SINE ID -3 80 8 9 1225 30 0 0 0 chr6 83936447 83936477 -65580560 + AT_rich Low_complexity Low_complexity 1 30 0 9 1225 1051 214 20 5 chr6 83937518 83937720 -65579317 + B3 SINE B2 1 205 -11 9 1225 203 149 0 41 chr6 83938219 83938268 -65578769 + (TTG)n Simple_repeat Simple_repeat 2 48 0 9 1225 250 254 175 0 chr6 83938471 83938534 -65578503 - RSINE1 SINE B4 -83 82 9 9 1225 663 220 111 18 chr6 83938633 83938804 -65578233 + ID_B1 SINE B4 1 187 -37 9 1225 560 286 31 38 chr6 83938982 83939142 -65577895 + RSINE1 SINE B4 4 162 -3 9 1225 3403 35 2 0 chr6 83939203 83939598 -65577439 + MTA_Mm LTR MaLR 1 396 0 9 1225 657 237 0 0 chr6 83939605 83939723 -65577314 - B3 SINE B2 -63 153 36 9 1225 395 322 17 17 chr6 83939722 83939842 -65577195 - B4A SINE B4 -51 241 122 9 1225 24 0 0 0 chr6 83939929 83939953 -65577084 + AT_rich Low_complexity Low_complexity 1 24 0 9 1225 275 197 0 96 chr6 83940363 83940436 -65576601 + L1MD LINE L1 2616 2681 -3465 9 1225 349 279 152 33 chr6 83940491 83940702 -65576335 + L1MD LINE L1 3015 3250 -2896 9 1225 280 214 179 31 chr6 83940845 83940984 -65576053 + L1MD LINE L1 3817 3976 -2170 9 1225 21 0 0 0 chr6 83942085 83942106 -65574931 + AT_rich Low_complexity Low_complexity 1 21 0 9 1225 413 281 0 11 chr6 83942156 83942246 -65574791 + PB1D10 SINE Alu 1 89 -28 9 1225 2166 172 50 17 chr6 83942309 83942712 -65574325 + MTC LTR MaLR 1 416 -5 9 1225 240 212 152 0 chr6 83942793 83942859 -65574178 + MT2A LTR ERVL 387 462 -71 9 1225 381 221 250 0 chr6 83942982 83943086 -65573951 + B1_Mur1 SINE Alu 14 143 -6 9 1225 2421 81 9 6 chr6 83943134 83943459 -65573578 - ORR1A2 LTR MaLR -1 326 1 9 1225 1287 7 0 7 chr6 83943544 83943691 -65573346 + B1_Mm SINE Alu 2 147 0 1 1225 204 67 0 0 chr6 83943694 83943724 -65573313 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1225 1264 27 7 0 chr6 83943734 83943880 -65573157 + B1_Mus1 SINE Alu 2 148 0 1 1225 900 225 9 36 chr6 83943911 83944132 -65572905 + B3 SINE B2 2 216 0 1 1225 405 229 19 0 chr6 83944140 83944245 -65572792 + L1MD LINE L1 5423 5529 -830 9 1225 544 247 118 43 chr6 83944263 83944424 -65572613 - B3 SINE B2 -28 188 16 1 1225 267 198 136 0 chr6 83944426 83944507 -65572530 + L1MD LINE L1 5519 5610 -632 9 1225 266 268 24 12 chr6 83944522 83944605 -65572432 - MLT1A1 LTR MaLR -7 401 318 1 1225 1086 313 130 34 chr6 83944726 83945288 -65571749 - MTE-int LTR MaLR -132 1448 833 1 1225 1187 79 94 22 chr6 83945532 83945713 -65571324 - B2_Mm2 SINE B2 -1 194 1 1 1225 182 318 80 34 chr6 83945718 83945806 -65571231 - L3 LINE CR1 -3484 1005 914 1 1225 309 299 169 8 chr6 83946161 83946279 -65570758 - MLT2B3 LTR ERVL -12 550 414 1 1225 310 328 215 20 chr6 83946278 83946524 -65570513 - MLT2B3 LTR ERVL -257 297 4 1 1225 193 275 87 0 chr6 83946940 83947009 -65570028 - MIRm SINE MIR -93 183 109 1 1225 1236 35 0 0 chr6 83947408 83947550 -65569487 + B1_Mus1 SINE Alu 1 142 -6 1 1225 405 0 0 0 chr6 83947552 83947597 -65569440 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1 1225 180 0 0 0 chr6 83947627 83947647 -65569390 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1225 308 64 21 0 chr6 83947734 83947781 -65569256 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 1 1225 336 140 0 0 chr6 83947816 83947866 -65569171 - B1_Mus1 SINE Alu -98 50 1 1 1225 435 63 0 0 chr6 83947917 83947980 -65569057 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1225 383 295 22 11 chr6 83947980 83948069 -65568968 - RSINE1 SINE B4 -75 90 1 1 1225 1139 226 36 12 chr6 83948268 83948519 -65568518 + MTEa LTR MaLR 1 257 -122 1 1225 1342 161 194 13 chr6 83948529 83948838 -65568199 - ORR1D1 LTR MaLR -6 368 4 1 1225 463 281 11 135 chr6 83948904 83949089 -65567948 + RSINE1 SINE B4 2 163 -2 1 1225 26 50 0 0 chr6 83949089 83949129 -65567908 + AT_rich Low_complexity Low_complexity 1 40 0 1 1225 264 299 13 13 chr6 83949322 83949400 -65567637 + MTEa LTR MaLR 87 164 -215 1 1225 236 162 100 150 chr6 83949424 83949504 -65567533 + MTEa LTR MaLR 264 339 -40 1 1225 293 236 56 0 chr6 83949476 83949548 -65567489 + RSINE1 SINE B4 90 165 0 1 1225 1013 228 16 11 chr6 83949580 83949766 -65567271 - B3 SINE B2 -27 189 3 1 1225 254 195 0 0 chr6 83949779 83949820 -65567217 + MTEa LTR MaLR 324 364 -15 1 1225 268 179 84 157 chr6 83949819 83949985 -65567052 + MER34 LTR ERV1 318 471 -71 1 1225 382 308 0 0 chr6 83950876 83950954 -65566083 + RSINE1 SINE B4 72 149 -16 1 1225 384 22 0 0 chr6 83950955 83951000 -65566037 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1225 1566 160 159 6 chr6 83951272 83951586 -65565451 + ORR1D1 LTR MaLR 5 366 -8 1 1225 413 221 126 0 chr6 83951715 83951810 -65565227 + RSINE1 SINE B4 2 108 -57 1 1225 332 223 68 87 chr6 83951804 83951907 -65565130 + B3A SINE B2 98 198 0 1 1225 546 16 0 0 chr6 83951913 83951976 -65565061 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1225 410 257 19 29 chr6 83951978 83952082 -65564955 - MLT1B LTR MaLR -237 153 51 1 1225 903 296 0 14 chr6 83952101 83952317 -65564720 + ID_B1 SINE B4 10 222 -2 1 1225 1210 48 0 26 chr6 83952321 83952472 -65564565 + B1_Mus2 SINE Alu 1 147 0 1 1225 261 0 0 0 chr6 83952475 83952504 -65564533 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1225 190 241 130 0 chr6 83952579 83952633 -65564404 + MIRm SINE MIR 177 237 -39 1 1225 339 146 88 128 chr6 83953176 83953230 -65563807 - PB1D9 SINE Alu -18 102 60 1 1225 1672 26 0 0 chr6 83953230 83953421 -65563616 + B2_Mm1a SINE B2 1 191 -2 1 1225 339 146 88 128 chr6 83953421 83953468 -65563569 - PB1D9 SINE Alu -61 59 5 1 1225 315 104 0 0 chr6 83953601 83953649 -65563388 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1225 207 0 0 0 chr6 83953649 83953671 -65563366 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1225 5189 16 0 5 chr6 83953723 83954304 -65562733 + L1Md_T LINE L1 6005 6582 0 1 1225 648 249 89 45 chr6 83954409 83954611 -65562426 - B3 SINE B2 0 216 6 1 1225 272 98 39 19 chr6 83954651 83954703 -65562334 + 4.5SRNA scRNA scRNA 30 82 -12 1 1225 780 41 0 0 chr6 83954657 83954754 -65562283 + B1_Mm SINE Alu 40 136 -11 1 1225 842 17 17 17 chr6 83954754 83954872 -65562165 + (GAAA)n Simple_repeat Simple_repeat 3 120 0 1 1225 2687 36 2 199 chr6 83954919 83955401 -65561636 + RLTR10 LTR ERVK 1 387 -3 1 1225 17662 19 1 0 chr6 83955418 83957361 -65559676 + RLTR10-int LTR ERVK 41 1984 -3 1 1225 2672 39 2 199 chr6 83957363 83957845 -65559192 + RLTR10 LTR ERVK 1 387 -3 1 1225 1350 126 51 9 chr6 83957990 83958170 -65558867 + URR1A DNA MER1_type 2 179 -47 1 1225 231 103 0 0 chr6 83958170 83958209 -65558828 + (TTA)n Simple_repeat Simple_repeat 1 39 0 1 1225 1350 126 51 9 chr6 83958209 83958244 -65558793 + URR1A DNA MER1_type 180 225 -1 1 1225 507 170 0 0 chr6 83959430 83959530 -65557507 + CT-rich Low_complexity Low_complexity 1 100 0 1 1225 918 129 36 0 chr6 83961191 83961330 -65555707 - B1_Mur4 SINE Alu -6 144 1 1 1225 317 304 47 23 chr6 83961524 83961652 -65555385 - MIR SINE MIR -99 163 33 1 1225 387 0 0 0 chr6 83961774 83961817 -65555220 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1225 292 141 47 0 chr6 83962231 83962295 -65554742 + GA-rich Low_complexity Low_complexity 3 69 0 1 1225 301 207 0 0 chr6 83962358 83962416 -65554621 + MIRm SINE MIR 65 122 -154 1 1225 1246 54 0 0 chr6 83962485 83962632 -65554405 - B1_Mm SINE Alu 0 147 1 1 1225 1234 48 0 0 chr6 83963901 83964048 -65552989 - B1_Mus2 SINE Alu 0 147 1 1 1225 515 306 89 21 chr6 83964404 83964641 -65552396 - MLT1J LTR MaLR -237 275 23 1 1225 477 0 0 0 chr6 83964665 83964718 -65552319 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1225 315 0 0 0 chr6 83964718 83964752 -65552285 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1225 503 290 8 8 chr6 83964782 83964914 -65552123 - B4 SINE B4 -159 133 2 1 1225 453 81 0 0 chr6 83965281 83965343 -65551694 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1225 268 309 142 19 chr6 83965667 83965822 -65551215 - L2b LINE L2 -202 3173 3000 1 1225 186 361 68 32 chr6 83965889 83966109 -65550928 - L2b LINE L2 -528 2891 2664 1 1225 1448 250 16 82 chr6 83966535 83967127 -65549910 - RLTR31_Mur LTR ERVK 0 553 68 1 1225 1181 48 0 13 chr6 83967177 83967326 -65549711 + B1_Mus2 SINE Alu 1 147 0 1 1225 279 71 0 0 chr6 83967326 83967368 -65549669 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1225 191 333 57 121 chr6 83967676 83967816 -65549221 - L2a LINE L2 -9 3417 3287 1 1225 425 285 64 0 chr6 83967892 83968015 -65549022 + ID_B1 SINE B4 14 156 -68 1 1225 270 284 11 112 chr6 83967944 83968096 -65548941 + B1F2 SINE Alu 5 281 -30 1 1225 907 124 14 28 chr6 83968127 83968268 -65548769 - B1_Mur4 SINE Alu -1 149 11 1 1225 234 91 0 0 chr6 83968334 83968367 -65548670 + (TCC)n Simple_repeat Simple_repeat 1 33 0 1 1225 532 283 105 98 chr6 83970788 83970859 -65546178 - B4 SINE B4 -1 291 221 1 1225 852 104 0 0 chr6 83970859 83970984 -65546053 + (TTTC)n Simple_repeat Simple_repeat 3 127 0 1 1225 532 283 105 98 chr6 83970984 83971131 -65545906 - B4 SINE B4 -72 220 73 1 1225 207 0 0 0 chr6 83971131 83971154 -65545883 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1225 532 283 105 98 chr6 83971154 83971200 -65545837 - B4 SINE B4 -220 72 24 1 1225 322 274 81 45 chr6 83972584 83972695 -65544342 - L2a LINE L2 -1 3425 3311 1 1225 480 317 19 29 chr6 83972912 83973117 -65543920 + MER20 DNA MER1_type 17 219 0 1 1225 1841 203 46 83 chr6 83973269 83973811 -65543226 + Lx7 LINE L1 7086 7607 -89 1 1225 2391 135 63 3 chr6 83973815 83974193 -65542844 - MTC LTR MaLR -8 413 13 1 1225 366 216 11 11 chr6 83974193 83974282 -65542755 + Lx7 LINE L1 7600 7688 -8 1 1225 1139 122 193 0 chr6 83974283 83974464 -65542573 - B3 SINE B2 0 216 1 1 1225 21 36 0 0 chr6 83974484 83974512 -65542525 + AT_rich Low_complexity Low_complexity 1 28 0 1 1225 256 65 43 21 chr6 83974658 83974705 -65542332 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 1 1225 455 265 0 25 chr6 83974705 83974825 -65542212 - PB1D10 SINE Alu 0 117 1 1 1225 1015 245 0 5 chr6 83975106 83975323 -65541714 + ID_B1 SINE B4 2 217 -7 1 1225 903 241 11 21 chr6 83975500 83975691 -65541346 - B3 SINE B2 -11 205 17 1 1225 335 248 54 27 chr6 83975729 83975841 -65541196 + PB1D10 SINE Alu 1 115 -2 1 1225 763 284 153 12 chr6 83976320 83976609 -65540428 - MTEb LTR MaLR -36 343 6 1 1225 437 296 96 0 chr6 83976840 83976965 -65540072 - B1F2 SINE Alu -12 137 1 1 1225 2029 177 48 19 chr6 83976981 83977356 -65539681 - ORR1B1 LTR MaLR -8 386 1 1 1225 315 0 0 0 chr6 83977379 83977414 -65539623 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1225 1220 43 0 0 chr6 83977416 83977557 -65539480 - B1_Mm SINE Alu -6 141 1 1 1225 312 158 35 0 chr6 83977563 83977620 -65539417 + B1_Mus1 SINE Alu 13 71 -77 1 1225 1034 0 16 0 chr6 83978005 83978126 -65538911 + (TCTCC)n Simple_repeat Simple_repeat 1 123 0 1 1225 857 240 52 35 chr6 83978419 83978648 -65538389 - B4A SINE B4 -59 233 1 1 1225 426 350 75 49 chr6 83979136 83979403 -65537634 - B4 SINE B4 -18 274 1 1 1225 839 122 14 48 chr6 83980108 83980254 -65536783 - B1_Mus1 SINE Alu -6 142 2 1 1225 1060 53 0 0 chr6 83980284 83980417 -65536620 - B1_Mm SINE Alu 0 147 15 1 1225 198 0 0 0 chr6 83980485 83980507 -65536530 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1225 245 51 0 25 chr6 83980527 83980567 -65536470 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1225 931 39 137 23 chr6 83980567 83980688 -65536349 - B1_Mus1 SINE Alu -9 139 1 1 1225 726 239 104 16 chr6 83980879 83981062 -65535975 - B3 SINE B2 -15 201 3 1 1225 813 270 24 44 chr6 83981294 83981542 -65535495 + MTD LTR MaLR 1 243 -176 1 1225 212 231 0 32 chr6 83982271 83982365 -65534672 + (TGG)n Simple_repeat Simple_repeat 1 91 0 1 1225 3795 106 15 14 chr6 83982451 83983034 -65534003 + RLTR19-int LTR ERVK 1429 2012 -4125 1 1225 1844 268 118 46 chr6 83983386 83984164 -65532873 + Charlie1a DNA MER1_type 463 1296 -159 1 1225 806 267 0 0 chr6 83984228 83984408 -65532629 - B3A SINE B2 -18 180 1 1 1225 223 271 75 96 chr6 83984417 83984440 -65532597 - B4A SINE B4 -106 186 121 1 1225 275 203 62 0 chr6 83984440 83984504 -65532533 - PB1D10 SINE Alu -33 84 17 1 1225 378 196 229 51 chr6 83985601 83985719 -65531318 + ID_B1 SINE B4 86 224 0 1 1225 273 303 0 116 chr6 83985730 83985816 -65531221 + ID SINE ID 3 78 -146 1 1225 257 236 131 19 chr6 83985873 83986011 -65531026 - L1MB8 LINE L1 -116 6068 5907 1 1225 1617 43 0 0 chr6 83986019 83986206 -65530831 - B2_Mm1a SINE B2 -5 188 2 1 1225 24 53 0 0 chr6 83986214 83986252 -65530785 + AT_rich Low_complexity Low_complexity 1 38 0 1 1225 23 33 0 0 chr6 83986277 83986307 -65530730 + AT_rich Low_complexity Low_complexity 1 30 0 1 1225 486 174 514 0 chr6 83986307 83986451 -65530586 - ID_B1 SINE B4 -6 218 1 1 1225 239 261 43 0 chr6 83986493 83986562 -65530475 + ID4_ SINE ID 1 72 -11 1 1225 922 97 14 0 chr6 83986666 83986810 -65530227 + (TTCCC)n Simple_repeat Simple_repeat 4 149 0 1 1225 297 167 0 0 chr6 83986815 83986869 -65530168 + CT-rich Low_complexity Low_complexity 1 54 0 1 1225 615 218 18 18 chr6 83986881 83986993 -65530044 - B1_Mur2 SINE Alu -30 119 8 1 1225 1152 83 30 0 chr6 83987527 83987547 -65529490 - B2_Mm2 SINE B2 -20 175 155 1 1225 428 0 0 19 chr6 83987547 83987600 -65529437 + (TATG)n Simple_repeat Simple_repeat 4 55 0 1 1225 1152 83 30 0 chr6 83987600 83987748 -65529289 - B2_Mm2 SINE B2 -41 154 3 1 1225 495 188 0 0 chr6 83988131 83988243 -65528794 + (TCCA)n Simple_repeat Simple_repeat 1 112 0 1 1225 520 290 7 0 chr6 83988272 83988410 -65528627 + (TCCA)n Simple_repeat Simple_repeat 1 139 0 1 1225 341 216 11 0 chr6 83988410 83988498 -65528539 + (TCTA)n Simple_repeat Simple_repeat 3 91 0 1 1225 371 340 31 0 chr6 83988537 83988696 -65528341 + (CCCA)n Simple_repeat Simple_repeat 2 165 0 1 1225 1907 156 162 0 chr6 83988726 83989084 -65527953 - MTC LTR MaLR -5 416 1 1 1225 1176 111 0 0 chr6 83989099 83989279 -65527758 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1 1225 768 155 0 0 chr6 83989279 83989421 -65527616 + (CCCA)n Simple_repeat Simple_repeat 1 142 0 1 1225 270 0 0 0 chr6 83989805 83989835 -65527202 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1225 342 0 0 0 chr6 83990098 83990136 -65526901 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1225 225 0 0 0 chr6 83990136 83990160 -65526877 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1225 2994 233 83 44 chr6 83990825 83990934 -65526103 - RCHARR1 DNA MER1_type -18 956 844 1 1225 745 206 52 0 chr6 83990934 83991070 -65525967 + B1_Mur1 SINE Alu 1 143 -6 1 1225 2994 233 83 44 chr6 83991070 83991477 -65525560 - RCHARR1 DNA MER1_type -131 843 428 1 1225 1808 160 84 51 chr6 83991477 83991681 -65525356 + RLTR14 LTR ERV1 1 224 -158 1 1225 990 144 7 0 chr6 83991681 83991827 -65525210 - B1_Mus1 SINE Alu -1 147 1 1 1225 1808 160 84 51 chr6 83991827 83991992 -65525045 + RLTR14 LTR ERV1 225 382 0 1 1225 2994 233 83 44 chr6 83991992 83992318 -65524719 - RCHARR1 DNA MER1_type -547 427 80 1 1225 951 120 12 6 chr6 83992326 83992494 -65524543 + (TTCC)n Simple_repeat Simple_repeat 2 170 0 1 1225 603 223 82 8 chr6 83992512 83992634 -65524403 - B1_Mur3 SINE Alu -18 131 1 1 1225 236 284 10 154 chr6 83992637 83992741 -65524296 - RCHARR1 DNA MER1_type -878 96 8 1 1225 1182 117 0 60 chr6 83994174 83994375 -65522662 + B2_Mm2 SINE B2 7 195 0 1 1225 290 279 38 0 chr6 83994387 83994466 -65522571 + B4A SINE B4 4 85 -207 1 1225 1302 180 9 13 chr6 83994468 83994699 -65522338 + ORR1D1 LTR MaLR 145 374 0 1 1225 341 319 0 0 chr6 83995102 83995196 -65521841 - ID_B1 SINE B4 -55 169 76 1 1225 610 274 44 19 chr6 83995358 83995563 -65521474 + Lx7 LINE L1 7158 7367 -329 1 1225 287 297 0 0 chr6 83995563 83995580 -65521457 + T-rich Low_complexity Low_complexity 112 128 0 1 1225 1129 69 21 0 chr6 83995580 83995724 -65521313 - B1_Mus2 SINE Alu 0 147 1 1 1225 287 297 0 0 chr6 83995724 83995834 -65521203 + T-rich Low_complexity Low_complexity 2 111 0 1 1225 573 15 0 0 chr6 83995845 83995911 -65521126 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1225 525 71 0 0 chr6 83995914 83995984 -65521053 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 1 1225 405 0 0 0 chr6 83996035 83996080 -65520957 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1225 713 230 158 9 chr6 83996343 83996558 -65520479 + B4 SINE B4 2 248 -44 1 1225 262 265 80 42 chr6 83996662 83996875 -65520162 + RLTR21 LTR ERVK 1086 1306 -266 1 1225 432 0 0 0 chr6 83997045 83997093 -65519944 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1225 251 114 0 22 chr6 83997433 83997478 -65519559 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1 1225 803 299 29 50 chr6 83997531 83997809 -65519228 + B4 SINE B4 21 292 0 1 1225 306 261 109 62 chr6 83997896 83998032 -65519005 - L1MD LINE L1 -2502 5493 5349 1 1225 513 32 0 0 chr6 83998032 83998095 -65518942 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 1 1225 306 261 109 62 chr6 83998095 83998110 -65518927 - L1MD LINE L1 -2647 5348 5331 1 1225 374 191 225 0 chr6 83998110 83998199 -65518838 - PB1D10 SINE Alu -8 109 1 1 1225 306 261 109 62 chr6 83998199 83998238 -65518799 - L1MD LINE L1 -2665 5330 5293 1 1225 339 25 0 0 chr6 83998285 83998325 -65518712 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1 1225 180 0 0 0 chr6 83998375 83998395 -65518642 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1225 285 221 92 11 chr6 83998396 83998483 -65518554 - PB1D10 SINE Alu -1 116 23 1 1225 315 65 0 0 chr6 83999134 83999180 -65517857 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1225 324 0 0 0 chr6 83999250 83999286 -65517751 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1225 185 286 44 79 chr6 83999604 83999718 -65517319 - L3 LINE CR1 -2000 2489 2380 1 1225 293 47 0 23 chr6 83999722 83999766 -65517271 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1225 1190 43 0 0 chr6 83999766 83999904 -65517133 - B1_Mus2 SINE Alu -9 138 1 1 1225 255 264 115 0 chr6 83999912 83999999 -65517038 - ID_B1 SINE B4 -7 217 121 1 1225 589 232 75 27 chr6 84000107 84000253 -65516784 - B3 SINE B2 -8 208 56 1 1225 687 246 205 8 chr6 84000812 84001046 -65515991 - B4 SINE B4 -10 282 3 2 1225 350 258 43 0 chr6 84001230 84001323 -65515714 - MER74B LTR ERVL -450 172 76 3 1225 480 293 17 9 chr6 84001336 84001469 -65515568 + PB1D10 SINE Alu 12 149 0 4 1225 210 154 0 0 chr6 84001514 84001553 -65515484 + T-rich Low_complexity Low_complexity 1 39 0 5 1225 291 256 70 0 chr6 84001838 84001924 -65515113 - PB1D7 SINE Alu -19 101 10 6 1225 547 251 48 1 chr6 84001851 84001998 -65515039 - ID_B1 SINE B4 -60 164 3 7 1225 688 273 20 60 chr6 84002009 84002046 -65514991 - B3A SINE B2 -7 191 161 8 1225 405 39 0 0 chr6 84002046 84002097 -65514940 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1225 688 273 20 60 chr6 84002097 84002258 -65514779 - B3A SINE B2 -38 160 1 8 1225 691 272 81 84 chr6 84002273 84002666 -65514371 - L1MA4 LINE L1 -365 5935 5544 1 1225 24 0 0 0 chr6 84003008 84003032 -65514005 + GC_rich Low_complexity Low_complexity 1 24 0 1 1225 670 180 164 0 chr6 84004613 84004741 -65512296 + B1_Mur2 SINE Alu 1 149 0 1 1225 263 317 171 20 chr6 84004809 84005060 -65511977 + B4 SINE B4 2 290 -2 1 1225 514 222 0 22 chr6 84005064 84005248 -65511789 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1225 778 271 67 34 chr6 84005503 84005739 -65511298 - L1MB3 LINE L1 -82 6101 5867 1 1225 257 219 125 0 chr6 84005739 84005803 -65511234 - ID4 SINE ID -8 75 4 1 1225 778 271 67 34 chr6 84005803 84005894 -65511143 - L1MB3 LINE L1 -317 5866 5763 1 1225 306 0 0 0 chr6 84005920 84005954 -65511083 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1225 898 245 38 9 chr6 84005960 84006170 -65510867 - B3 SINE B2 0 216 1 1 1225 881 26 9 0 chr6 84006205 84006321 -65510716 - B1_Mm SINE Alu 0 147 31 1 1225 708 256 111 0 chr6 84006332 84006512 -65510525 - ID_B1 SINE B4 -7 217 18 2 1225 918 235 106 0 chr6 84006664 84006881 -65510156 - MTE2b LTR MaLR -139 240 1 2 1225 411 267 78 9 chr6 84006883 84007021 -65510016 - MTE2b-int LTR MaLR -2 1578 1441 2 1225 1218 184 5 5 chr6 84007750 84007958 -65509079 + ID_B1 SINE B4 5 212 -12 2 1225 231 114 0 0 chr6 84007958 84007993 -65509044 + (TAAG)n Simple_repeat Simple_repeat 1 35 0 2 1225 585 129 0 0 chr6 84009154 84009247 -65507790 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 1225 788 249 109 24 chr6 84010333 84010580 -65506457 + B4 SINE B4 2 269 -23 2 1225 366 23 0 0 chr6 84010581 84010624 -65506413 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1225 234 0 0 0 chr6 84010624 84010650 -65506387 + (CCA)n Simple_repeat Simple_repeat 1 26 0 2 1225 345 319 17 42 chr6 84010650 84010673 -65506364 + ID_B1 SINE B4 68 139 -153 2 1225 494 248 7 72 chr6 84010673 84010812 -65506225 + B1F SINE Alu 6 135 -14 2 1225 345 319 17 42 chr6 84010812 84010843 -65506194 + ID_B1 SINE B4 140 246 -46 2 1225 624 240 107 70 chr6 84011025 84011267 -65505770 - B4A SINE B4 0 292 42 3 1225 342 218 38 13 chr6 84011263 84011342 -65505695 - B3 SINE B2 -135 81 1 3 1225 249 248 259 28 chr6 84011346 84011454 -65505583 - L1MC4 LINE L1 -1099 6943 6811 3 1225 903 235 59 20 chr6 84011924 84012128 -65504909 + B3 SINE B2 1 212 -4 3 1225 342 0 0 0 chr6 84012272 84012310 -65504727 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1225 1472 221 26 0 chr6 84012401 84012713 -65504324 - MTE2b LTR MaLR 0 379 60 3 1225 502 252 15 15 chr6 84012833 84012966 -65504071 - ID_B1 SINE B4 -12 212 80 3 1225 221 352 23 0 chr6 84013696 84013784 -65503253 + MIRc SINE MIR 19 108 -160 3 1225 561 291 0 8 chr6 84015491 84015619 -65501418 - RSINE1 SINE B4 -35 130 4 3 1225 243 0 0 0 chr6 84015637 84015664 -65501373 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1225 1247 42 0 0 chr6 84015664 84015808 -65501229 - B1_Mus2 SINE Alu -3 144 1 4 1225 22 35 0 0 chr6 84015818 84015847 -65501190 + AT_rich Low_complexity Low_complexity 1 29 0 4 1225 573 228 47 53 chr6 84015862 84016098 -65500939 - ID_B1 SINE B4 -11 281 80 4 1225 340 237 65 0 chr6 84016183 84016276 -65500761 + B1F SINE Alu 48 146 -3 4 1225 198 0 0 0 chr6 84016442 84016464 -65500573 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1225 1191 62 0 0 chr6 84016464 84016609 -65500428 - B1_Mus2 SINE Alu 0 147 3 4 1225 1146 82 7 0 chr6 84016715 84016861 -65500176 - B1_Mus1 SINE Alu -1 147 1 4 1226 217 413 40 0 chr6 84017803 84017929 -65499108 + MIR SINE MIR 52 182 -80 4 1226 376 303 4 34 chr6 84018237 84018354 -65498683 - PB1D7 SINE Alu -22 127 15 4 1226 408 332 140 44 chr6 84018372 84018687 -65498350 - MER67C LTR ERV1 -78 633 289 4 1226 1671 139 32 226 chr6 84018960 84019424 -65497613 - ORR1D1 LTR MaLR 0 374 1 5 1226 1182 236 0 0 chr6 84019622 84019838 -65497199 + B3 SINE B2 1 216 0 5 1226 228 140 20 0 chr6 84019920 84019970 -65497067 - B3 SINE B2 0 216 166 5 1226 601 152 0 43 chr6 84021208 84021325 -65495712 - PB1D9 SINE Alu 0 120 9 5 1226 523 221 113 33 chr6 84024260 84024410 -65492627 - RSINE1 SINE B4 0 165 4 5 1226 401 272 99 26 chr6 84024438 84024467 -65492570 - RSINE1 SINE B4 -2 163 125 5 1226 204 40 0 0 chr6 84024467 84024492 -65492545 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1226 401 272 99 26 chr6 84024492 84024613 -65492424 - RSINE1 SINE B4 -41 124 2 5 1226 414 0 0 0 chr6 84024622 84024668 -65492369 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1226 270 228 95 14 chr6 84024698 84024842 -65492195 - L1M2 LINE L1 -400 5903 5746 5 1226 591 15 0 0 chr6 84024909 84024977 -65492060 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 1226 2115 99 16 3 chr6 84025952 84026267 -65490770 - ORR1A2 LTR MaLR -8 319 1 6 1226 201 196 0 0 chr6 84026280 84026326 -65490711 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1226 451 267 80 12 chr6 84026394 84026557 -65490480 - B4A SINE B4 -117 175 2 6 1226 1433 65 21 5 chr6 84026597 84026784 -65490253 - B2_Mm2 SINE B2 -4 191 2 6 1226 250 198 125 23 chr6 84026784 84026872 -65490165 - Lx9 LINE L1 -10 7634 7538 6 1226 2348 172 28 7 chr6 84026871 84027293 -65489744 - Lx9 LINE L1 -242 7402 6972 6 1226 437 223 260 13 chr6 84027296 84027446 -65489591 - ID_B1 SINE B4 -35 189 3 6 1226 501 17 0 0 chr6 84028208 84028266 -65488771 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 6 1226 223 283 0 0 chr6 84028517 84028577 -65488460 + A-rich Low_complexity Low_complexity 1 60 0 6 1226 303 327 213 19 chr6 84028752 84029076 -65487961 - MER82 DNA MER2_type -261 392 6 6 1226 1221 25 30 0 chr6 84029436 84029635 -65487402 + (TCTA)n Simple_repeat Simple_repeat 1 205 0 6 1226 1374 64 0 0 chr6 84029671 84030097 -65486940 + (TCCA)n Simple_repeat Simple_repeat 1 426 0 7 1226 324 326 95 43 chr6 84030245 84030476 -65486561 - L1MC4a LINE L1 -1970 5912 5670 7 1226 1296 102 11 0 chr6 84030944 84031120 -65485917 + B2_Mm1t SINE B2 2 179 -14 7 1226 309 62 30 15 chr6 84031198 84031264 -65485773 + B2_Mm2 SINE B2 127 193 -2 7 1226 330 26 0 0 chr6 84031400 84031439 -65485598 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 1226 231 36 0 0 chr6 84031439 84031466 -65485571 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1226 3788 116 73 7 chr6 84031524 84032292 -65484745 - Lx2 LINE L1 -2 6998 6090 7 1226 422 36 18 0 chr6 84032380 84032436 -65484601 + (TATG)n Simple_repeat Simple_repeat 2 58 0 7 1226 726 129 72 8 chr6 84032436 84032561 -65484476 - B1_Mur2 SINE Alu -8 141 9 7 1226 983 226 54 5 chr6 84032569 84032791 -65484246 - B4A SINE B4 -58 234 2 7 1226 354 61 0 0 chr6 84032957 84033006 -65484031 + (CTTG)n Simple_repeat Simple_repeat 1 49 0 8 1226 1341 68 0 0 chr6 84033006 84033183 -65483854 + (TTCC)n Simple_repeat Simple_repeat 1 177 0 8 1226 522 119 0 0 chr6 84033195 84033279 -65483758 + (TCCC)n Simple_repeat Simple_repeat 1 84 0 8 1226 200 301 156 80 chr6 84034361 84034560 -65482477 - MIRb SINE MIR -11 257 44 8 1226 216 265 0 0 chr6 84035024 84035073 -65481964 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1226 544 273 39 0 chr6 84035456 84035584 -65481453 + B3A SINE B2 2 134 -64 8 1226 1236 55 0 0 chr6 84036423 84036569 -65480468 + B1_Mus2 SINE Alu 1 146 -1 8 1226 391 35 0 34 chr6 84036731 84036790 -65480247 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1226 436 260 32 76 chr6 84036793 84036951 -65480086 - RSINE1 SINE B4 -12 153 3 8 1226 534 16 0 0 chr6 84038235 84038298 -65478739 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1226 220 195 0 0 chr6 84038415 84038456 -65478581 - ID4_ SINE ID 0 83 43 9 1226 342 45 0 0 chr6 84038628 84038672 -65478365 + (CAA)n Simple_repeat Simple_repeat 1 44 0 9 1226 758 245 33 14 chr6 84038674 84038885 -65478152 + B3 SINE B2 2 216 0 9 1226 201 39 0 0 chr6 84038916 84038942 -65478095 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1226 318 225 23 70 chr6 84038942 84039028 -65478009 - ID4 SINE ID 0 83 2 9 1226 286 264 128 32 chr6 84039205 84039330 -65477707 + ID_B1 SINE B4 86 222 -2 9 1226 245 53 35 35 chr6 84039392 84039450 -65477587 + (TA)n Simple_repeat Simple_repeat 1 58 0 9 1226 183 138 33 33 chr6 84039482 84039542 -65477495 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 9 1226 361 299 59 56 chr6 84039902 84040189 -65476848 - L1MEg LINE L1 -2456 3690 3403 9 1226 300 234 52 31 chr6 84040262 84040359 -65476678 - L1MEg LINE L1 -4144 2098 2000 9 1226 228 67 0 0 chr6 84040374 84040404 -65476633 + (TTC)n Simple_repeat Simple_repeat 3 32 0 9 1226 339 308 60 0 chr6 84040404 84040461 -65476576 - L1MEg LINE L1 -4132 1952 1896 1 1226 1203 41 14 14 chr6 84040461 84040609 -65476428 - B1_Mus1 SINE Alu 0 148 1 1 1226 339 308 60 0 chr6 84040609 84040668 -65476369 - L1MEg LINE L1 -4189 1895 1830 1 1226 214 98 19 19 chr6 84040673 84040725 -65476312 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 1 1226 360 235 23 12 chr6 84040912 84040998 -65476039 - ID_B1 SINE B4 0 224 138 1 1226 451 243 16 65 chr6 84041108 84041134 -65475903 - ID_B1 SINE B4 -105 119 97 1 1226 2361 93 12 58 chr6 84041134 84041477 -65475560 - ORR1A2 LTR MaLR 0 327 1 1 1226 451 243 16 65 chr6 84041477 84041573 -65475464 - ID_B1 SINE B4 -128 96 3 1 1226 458 244 12 191 chr6 84042565 84042727 -65474310 - B1_Mur1 SINE Alu -5 144 12 1 1226 1003 256 5 36 chr6 84042739 84042962 -65474075 - ID_B1 SINE B4 -8 216 1 1 1226 239 247 12 0 chr6 84043446 84043527 -65473510 + (TTTA)n Simple_repeat Simple_repeat 3 84 0 1 1226 248 286 29 0 chr6 84043528 84043598 -65473439 - ID4_ SINE ID -11 72 1 1 1226 583 218 167 23 chr6 84043996 84044170 -65472867 + ID_B1 SINE B4 21 219 -5 1 1226 195 100 0 0 chr6 84044405 84044435 -65472602 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1 1226 307 145 81 0 chr6 84045662 84045724 -65471313 - Charlie12 DNA MER1_type -7 2866 2800 1 1226 267 153 0 5 chr6 84047424 84047477 -65469560 + MIRc SINE MIR 107 157 -105 1 1226 188 214 286 0 chr6 84048724 84048794 -65468243 + MIR SINE MIR 179 268 0 1 1226 274 268 0 0 chr6 84053464 84053535 -65463502 - MIR SINE MIR -126 136 66 1 1226 701 148 8 0 chr6 84054592 84054720 -65462317 + CT-rich Low_complexity Low_complexity 3 131 0 1 1226 997 119 0 22 chr6 84054720 84054900 -65462137 + (TCCC)n Simple_repeat Simple_repeat 3 178 0 1 1226 306 73 0 0 chr6 84056505 84056546 -65460491 + (GGGTG)n Simple_repeat Simple_repeat 3 43 0 1 1226 262 188 133 13 chr6 84057074 84057165 -65459872 + MIRc SINE MIR 59 162 -100 1 1226 194 309 0 0 chr6 84057174 84057216 -65459821 + L2b LINE L2 3312 3353 -22 1 1226 589 224 0 0 chr6 84058416 84058523 -65458514 + ID_B1 SINE B4 80 186 -38 1 1226 329 272 0 11 chr6 84058440 84058533 -65458504 - YREP_Mm Unknown Unknown -1518 294 203 1 1226 588 28 0 0 chr6 84058540 84058591 -65458446 + (GGA)n Simple_repeat Simple_repeat 3 53 0 1 1226 1014 152 0 0 chr6 84058591 84058768 -65458269 + GA-rich Low_complexity Low_complexity 3 179 0 1 1226 588 28 0 0 chr6 84058768 84058788 -65458249 + (GGA)n Simple_repeat Simple_repeat 3 22 0 1 1226 339 136 0 0 chr6 84058814 84058873 -65458164 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1226 201 94 0 0 chr6 84059350 84059382 -65457655 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 1 1226 211 341 62 39 chr6 84059474 84059602 -65457435 + MIRb SINE MIR 88 218 -50 1 1226 2721 131 35 2 chr6 84059705 84060111 -65456926 + MTC LTR MaLR 1 419 -2 1 1226 198 0 0 0 chr6 84060170 84060192 -65456845 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1226 611 292 102 53 chr6 84062399 84062663 -65454374 + B4 SINE B4 5 281 -11 1 1226 200 216 0 0 chr6 84062714 84062751 -65454286 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1 1226 1373 213 90 48 chr6 84064231 84064586 -65452451 - ORR1D2 LTR MaLR 0 370 1 1 1226 235 299 58 0 chr6 84066773 84066860 -65450177 + Charlie6 DNA MER1_type 1558 1649 -1851 1 1226 475 232 48 27 chr6 84069275 84069421 -65447616 - MER5A1 DNA MER1_type -17 149 1 1 1226 348 24 0 0 chr6 84070548 84070589 -65446448 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1226 883 270 33 14 chr6 84071642 84071856 -65445181 - ID_B1 SINE B4 -2 222 5 1 1226 227 309 0 42 chr6 84072158 84072229 -65444808 - MER94 DNA AcHobo -53 81 14 1 1226 318 223 0 60 chr6 84073402 84073502 -65443535 - ID_B1 SINE B4 0 224 131 1 1226 409 107 321 9 chr6 84073539 84073651 -65443386 - B2_Mm2 SINE B2 -2 193 47 1 1226 1240 109 11 0 chr6 84073679 84073853 -65443184 - B2_Mm1t SINE B2 -14 179 4 1 1226 226 272 95 32 chr6 84075421 84075516 -65441521 - L2b LINE L2 -300 3126 3023 1 1226 350 305 68 15 chr6 84075676 84075809 -65441228 + MER20 DNA MER1_type 2 141 -78 1 1226 300 125 0 64 chr6 84076829 84076923 -65440114 + (TCTCTG)n Simple_repeat Simple_repeat 4 91 0 1 1226 610 229 0 11 chr6 84077350 84077531 -65439506 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1226 342 0 0 0 chr6 84077862 84077900 -65439137 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1226 246 62 0 0 chr6 84077900 84077931 -65439106 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 1 1226 525 243 19 0 chr6 84077999 84078106 -65438931 - B1_Mur1 SINE Alu -40 109 1 1 1226 308 221 26 34 chr6 84078122 84078239 -65438798 + (TG)n Simple_repeat Simple_repeat 1 116 0 1 1226 485 121 23 31 chr6 84078254 84078382 -65438655 + (TG)n Simple_repeat Simple_repeat 1 127 0 1 1226 1038 236 123 11 chr6 84078382 84078643 -65438394 - B4 SINE B4 0 292 3 1 1226 258 81 0 0 chr6 84078673 84078710 -65438327 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1226 594 298 82 10 chr6 84078786 84078993 -65438044 - MIR SINE MIR -18 244 23 1 1226 600 125 0 0 chr6 84079626 84079722 -65437315 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 1226 33 43 0 0 chr6 84083845 84083892 -65433145 + AT_rich Low_complexity Low_complexity 1 47 0 1 1226 534 308 0 0 chr6 84083894 84084024 -65433013 - ID_B1 SINE B4 -3 221 92 1 1226 204 40 0 0 chr6 84084649 84084674 -65432363 + (G)n Simple_repeat Simple_repeat 1 25 0 1 1226 215 280 118 0 chr6 84086877 84086970 -65430067 + L2a LINE L2 3323 3426 0 1 1226 1050 216 38 0 chr6 84087901 84088114 -65428923 + ID_B1 SINE B4 4 224 0 1 1226 283 309 24 0 chr6 84091035 84091119 -65425918 + MER5B DNA MER1_type 89 174 -4 1 1226 208 291 181 19 chr6 84091141 84091246 -65425791 + MER5A DNA MER1_type 47 168 -21 1 1226 180 0 0 0 chr6 84093976 84093996 -65423041 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1226 587 67 0 11 chr6 84095345 84095435 -65421602 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 1226 228 369 0 0 chr6 84096266 84096350 -65420687 + G-rich Low_complexity Low_complexity 5 88 0 1 1226 330 300 127 0 chr6 84098095 84098245 -65418792 - MIRb SINE MIR -12 256 88 1 1226 266 284 27 0 chr6 84098606 84098680 -65418357 + Zaphod2 DNA Tip100 145 220 -3304 1 1226 324 0 0 0 chr6 84100136 84100172 -65416865 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1226 205 206 15 60 chr6 84101018 84101085 -65415952 + (CCCCAG)n Simple_repeat Simple_repeat 1 64 0 1 1226 220 250 0 0 chr6 84101508 84101556 -65415481 + C-rich Low_complexity Low_complexity 1 48 0 1 1226 221 239 0 0 chr6 84103202 84103248 -65413789 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 1 1226 260 373 105 7 chr6 84103661 84103804 -65413233 + L2b LINE L2 3212 3368 -7 1 1226 365 233 17 0 chr6 84103809 84103929 -65413108 + (TGGA)n Simple_repeat Simple_repeat 1 122 0 1 1226 636 227 0 0 chr6 84103992 84104168 -65412869 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 1 1226 963 86 0 0 chr6 84104185 84104324 -65412713 + (TATG)n Simple_repeat Simple_repeat 1 139 0 1 1226 572 165 9 0 chr6 84104906 84105021 -65412016 + GA-rich Low_complexity Low_complexity 1 116 0 1 1226 180 0 0 0 chr6 84105206 84105226 -65411811 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1226 327 231 64 12 chr6 84105326 84105577 -65411460 + (TG)n Simple_repeat Simple_repeat 1 264 0 1 1226 396 0 0 0 chr6 84106381 84106425 -65410612 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1226 185 289 171 0 chr6 84106825 84106901 -65410136 - MIRb SINE MIR -137 131 43 1 1226 531 96 0 0 chr6 84106945 84107028 -65410009 + (GGGA)n Simple_repeat Simple_repeat 2 84 0 1 1226 434 201 41 7 chr6 84108082 84108227 -65408810 + CT-rich Low_complexity Low_complexity 5 154 0 1 1226 364 209 75 0 chr6 84108227 84108294 -65408743 - ID4 SINE ID -10 73 2 1 1226 810 272 89 31 chr6 84108607 84108865 -65408172 + B4A SINE B4 2 274 -18 1 1226 234 278 70 30 chr6 84109292 84109392 -65407645 - Tigger13a DNA MER2_type -229 542 439 1 1226 3541 68 0 0 chr6 84109445 84109888 -65407149 + L1Md_A LINE L1 6140 6582 0 1 1226 306 50 0 0 chr6 84110288 84110328 -65406709 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1226 459 318 47 52 chr6 84110340 84110552 -65406485 - Lx8 LINE L1 -1574 5899 5689 1 1226 200 329 0 0 chr6 84110704 84110789 -65406248 + T-rich Low_complexity Low_complexity 1 85 0 1 1226 1991 64 0 16 chr6 84110793 84111046 -65405991 - L1_Mus1 LINE L1 -1 6566 6318 1 1226 1229 81 0 0 chr6 84111046 84111206 -65405831 + L1_Mus1 LINE L1 6159 6318 -249 1 1226 238 286 64 123 chr6 84111395 84111614 -65405423 - L1MEd LINE L1 -2190 3956 3751 1 1226 396 186 3 126 chr6 84111640 84111744 -65405293 - B1_Mur2 SINE Alu 0 120 15 1 1226 264 266 140 88 chr6 84111649 84111785 -65405252 - ID_B1 SINE B4 -21 203 61 1 1226 448 318 98 17 chr6 84111790 84112136 -65404901 - L1MEd LINE L1 -2443 3703 3330 1 1226 455 258 209 35 chr6 84112201 84112684 -65404353 - L1MEd LINE L1 -2912 3234 2668 1 1226 235 233 130 130 chr6 84112743 84112770 -65404267 - B2_Mm1t SINE B2 -18 175 149 1 1226 204 111 0 0 chr6 84112770 84112806 -65404231 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1226 487 186 38 38 chr6 84112806 84112916 -65404121 - B3A SINE B2 -42 156 38 1 1226 572 237 31 24 chr6 84112920 84113062 -65403975 - B1_Mur1 SINE Alu -15 132 5 1 1226 358 257 0 0 chr6 84113213 84113283 -65403754 - ID4_ SINE ID -9 74 5 1 1226 978 93 0 0 chr6 84113285 84113424 -65403613 + (CAGG)n Simple_repeat Simple_repeat 1 139 0 1 1226 195 129 0 0 chr6 84113463 84113494 -65403543 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1226 459 269 39 0 chr6 84113610 84113714 -65403323 - PB1D10 SINE Alu -9 108 1 1 1226 321 336 10 0 chr6 84113941 84114045 -65402992 - L1MEd LINE L1 -4486 1680 1576 1 1226 304 341 0 12 chr6 84114125 84114211 -65402826 - L1MEd LINE L1 -4992 1250 1166 1 1226 520 341 17 0 chr6 84114379 84114558 -65402479 + MER2 DNA MER2_type 130 311 -34 1 1226 754 235 84 0 chr6 84114621 84114787 -65402250 - B3A SINE B2 -16 182 3 1 1226 426 250 134 39 chr6 84114818 84114997 -65402040 - B3A SINE B2 -2 196 1 1 1226 30 0 0 0 chr6 84115121 84115151 -65401886 + AT_rich Low_complexity Low_complexity 1 30 0 1 1226 653 334 33 3 chr6 84115226 84115529 -65401508 - L1MEd LINE L1 -5299 837 526 1 1226 191 239 72 29 chr6 84116416 84116485 -65400552 + MIR3 SINE MIR 14 85 -123 2 1226 237 431 0 13 chr6 84116748 84116903 -65400134 - MamRep605 Unknown Unknown -711 165 13 2 1226 1017 202 173 28 chr6 84117057 84117311 -65399726 - B4A SINE B4 -1 291 1 2 1226 268 294 150 89 chr6 84118314 84118628 -65398409 - MamRep434 DNA TcMar -72 354 22 2 1226 360 0 0 0 chr6 84119040 84119080 -65397957 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1226 418 271 0 27 chr6 84120034 84120144 -65396893 + PB1D10 SINE Alu 11 117 0 2 1226 259 237 68 0 chr6 84120160 84120219 -65396818 + ID4 SINE ID 12 74 -9 2 1226 240 242 56 83 chr6 84120219 84120231 -65396806 + tRNA-Ala-GCY_ tRNA tRNA 6 74 -1 2 1226 480 294 163 65 chr6 84120902 84121196 -65395841 - MamGypLTR2b LTR Gypsy -2 920 598 2 1226 290 159 14 0 chr6 84121269 84121338 -65395699 + CT-rich Low_complexity Low_complexity 1 70 0 2 1226 1349 30 18 0 chr6 84121494 84121662 -65395375 - L1Md_F3 LINE L1 0 6584 6414 2 1226 934 251 9 9 chr6 84121890 84122111 -65394926 - ID_B1 SINE B4 -3 221 1 2 1226 211 302 55 28 chr6 84122194 84122303 -65394734 - L2a LINE L2 0 3426 3315 2 1226 481 289 49 27 chr6 84122769 84122954 -65394083 + RMER15 LTR ERVL 347 535 -40 2 1226 322 328 237 32 chr6 84123007 84123783 -65393254 - L2a LINE L2 -419 3000 2066 2 1226 747 297 32 23 chr6 84123862 84124079 -65392958 + ID_B1 SINE B4 4 222 -2 2 1226 842 197 0 7 chr6 84124103 84124251 -65392786 + B1_Mur3 SINE Alu 2 148 -1 2 1226 486 290 52 93 chr6 84124369 84124691 -65392346 - B4 SINE B4 -11 281 3 2 1226 472 239 60 9 chr6 84124946 84125115 -65391922 - L1MB8 LINE L1 -178 6001 5809 2 1226 331 321 100 41 chr6 84125135 84125554 -65391483 - L1MB8 LINE L1 -411 5763 5320 2 1226 438 304 52 99 chr6 84125561 84125741 -65391296 - B3 SINE B2 -6 210 37 2 1226 696 169 146 0 chr6 84125741 84125871 -65391166 - B1_Mur4 SINE Alu -1 149 1 2 1226 438 304 52 99 chr6 84125871 84125902 -65391135 - B3 SINE B2 -180 36 9 2 1226 378 188 0 23 chr6 84125944 84126031 -65391006 - L1MB8 LINE L1 -893 5253 5169 2 1226 311 238 106 71 chr6 84126073 84126186 -65390851 + RSINE1 SINE B4 3 119 -46 2 1226 1105 202 14 0 chr6 84126494 84126702 -65390335 - B3 SINE B2 0 216 6 2 1226 413 247 32 0 chr6 84126719 84126812 -65390225 - PB1D7 SINE Alu -6 114 19 2 1226 328 352 64 38 chr6 84127000 84127236 -65389801 - L1M5 LINE L1 -2502 3644 3403 2 1226 23 0 0 0 chr6 84127447 84127470 -65389567 + AT_rich Low_complexity Low_complexity 1 23 0 2 1226 216 0 0 0 chr6 84127924 84127948 -65389089 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1226 225 0 0 0 chr6 84129469 84129494 -65387543 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1226 316 313 70 51 chr6 84130068 84130226 -65386811 + RSINE1 SINE B4 5 165 0 2 1226 648 174 0 0 chr6 84130229 84130350 -65386687 + (CA)n Simple_repeat Simple_repeat 1 121 0 2 1226 1611 47 5 0 chr6 84130393 84130585 -65386452 + B2_Mm1a SINE B2 1 193 0 2 1226 204 118 29 0 chr6 84130701 84130735 -65386302 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 2 1226 262 327 51 19 chr6 84131034 84131190 -65385847 + MER53 DNA hAT 33 193 0 2 1226 323 357 83 87 chr6 84132019 84132295 -65384742 + L1M5 LINE L1 2197 2471 -3744 2 1226 1254 109 44 0 chr6 84132431 84132614 -65384423 + B2_Mm2 SINE B2 1 191 -4 2 1226 325 303 168 12 chr6 84132927 84133094 -65383943 + L1M7 LINE L1 5 197 -6021 2 1226 317 330 70 34 chr6 84133760 84134146 -65382891 + L1M7 LINE L1 980 1379 -4839 2 1226 1231 61 0 0 chr6 84134754 84134901 -65382136 - B1_Mus1 SINE Alu 0 148 2 2 1226 721 194 0 23 chr6 84135065 84135197 -65381840 - B1_Mur4 SINE Alu -21 129 1 2 1226 207 0 0 0 chr6 84135204 84135227 -65381810 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 2 1226 932 136 0 45 chr6 84135436 84135590 -65381447 - B1_Mur4 SINE Alu -1 149 3 2 1226 1121 178 60 15 chr6 84137017 84137217 -65379820 - B3 SINE B2 0 216 8 2 1226 270 312 13 0 chr6 84137225 84137302 -65379735 + MER96B DNA hAT 307 384 -33 2 1226 317 244 231 11 chr6 84138519 84138705 -65378332 - L1MD3 LINE L1 -57 7938 7712 2 1226 522 0 0 0 chr6 84139088 84139146 -65377891 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 1226 225 0 0 0 chr6 84139265 84139290 -65377747 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1226 333 0 0 0 chr6 84139403 84139440 -65377597 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1226 904 151 22 0 chr6 84140249 84140388 -65376649 - B1_Mus2 SINE Alu -5 142 1 2 1226 232 221 248 0 chr6 84140544 84140657 -65376380 + MIR3 SINE MIR 51 191 -17 2 1226 1180 266 120 14 chr6 84141030 84141396 -65375641 + MTD LTR MaLR 1 405 -14 2 1226 1251 61 0 0 chr6 84143455 84143602 -65373435 + B1_Mus2 SINE Alu 1 147 0 2 1226 207 0 0 0 chr6 84143602 84143625 -65373412 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1226 411 21 0 0 chr6 84143846 84143894 -65373143 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1226 303 28 0 0 chr6 84144244 84144280 -65372757 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1226 528 250 0 0 chr6 84146816 84146992 -65370045 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 1226 543 242 0 0 chr6 84147014 84147192 -65369845 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1227 1234 238 48 80 chr6 84148366 84148741 -65368296 - MTEa LTR MaLR -13 366 4 2 1227 356 238 143 0 chr6 84149245 84149350 -65367687 + MIR SINE MIR 19 138 -124 2 1227 587 239 45 106 chr6 84149350 84149561 -65367476 - MTE2a LTR MaLR -184 212 1 2 1227 387 301 96 43 chr6 84150351 84150519 -65366518 + L1MB7 LINE L1 5774 5947 -237 2 1227 1064 255 18 50 chr6 84150519 84150599 -65366438 + B4 SINE B4 3 80 -212 2 1227 585 42 0 0 chr6 84150599 84150671 -65366366 + (CAAAC)n Simple_repeat Simple_repeat 2 73 0 2 1227 1064 255 18 50 chr6 84150671 84150871 -65366166 + B4 SINE B4 81 274 -18 2 1227 561 52 0 0 chr6 84150874 84150951 -65366086 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1227 387 301 96 43 chr6 84150951 84151080 -65365957 + L1MB7 LINE L1 5948 6091 -93 2 1227 646 186 31 6 chr6 84151114 84151241 -65365796 - B3 SINE B2 0 198 75 2 1227 574 267 66 82 chr6 84151381 84151577 -65365460 - B3A SINE B2 -1 197 5 2 1227 327 292 77 13 chr6 84151935 84152091 -65364946 + L1MB4 LINE L1 5745 5910 -270 2 1227 373 238 107 0 chr6 84152141 84152263 -65364774 + L1MB4 LINE L1 5992 6126 -54 2 1227 1150 217 61 19 chr6 84152269 84152532 -65364505 - MTD LTR MaLR -141 278 5 2 1227 393 39 0 0 chr6 84152532 84152583 -65364454 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1227 684 215 0 0 chr6 84152583 84152851 -65364186 + (TA)n Simple_repeat Simple_repeat 1 268 0 2 1227 971 232 18 4 chr6 84153463 84153692 -65363345 - B4 SINE B4 -59 233 2 2 1227 288 0 0 0 chr6 84154244 84154276 -65362761 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1227 343 333 35 16 chr6 84154391 84154647 -65362390 + L1ME4a LINE L1 5601 5861 -263 2 1227 509 219 0 175 chr6 84154752 84154929 -65362108 + B3A SINE B2 53 198 0 2 1227 1233 239 166 14 chr6 84155084 84155440 -65361597 - MTD LTR MaLR 0 419 10 2 1227 413 257 177 38 chr6 84155449 84155635 -65361402 - B3 SINE B2 0 216 5 2 1227 203 32 65 0 chr6 84155659 84155690 -65361347 + (TAAAAA)n Simple_repeat Simple_repeat 1 33 0 2 1227 492 250 8 33 chr6 84156047 84156167 -65360870 + PB1D10 SINE Alu 1 117 0 2 1227 180 295 167 35 chr6 84156215 84156359 -65360678 - MIRb SINE MIR -46 222 60 2 1227 362 274 34 86 chr6 84157325 84157533 -65359504 - RMER15 LTR ERVL -178 397 52 2 1227 434 279 128 27 chr6 84158147 84158335 -65358702 - B3 SINE B2 -8 208 2 2 1227 228 260 104 0 chr6 84158903 84158980 -65358057 - Arthur1B DNA Tip100 -3 1222 1138 2 1227 211 338 0 0 chr6 84159339 84159407 -65357630 + MER5A DNA MER1_type 8 75 -114 2 1227 585 0 0 0 chr6 84162112 84162177 -65354860 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 2 1227 390 103 40 20 chr6 84162814 84162913 -65354124 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 2 1227 644 219 0 11 chr6 84164107 84164287 -65352750 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1227 1359 67 0 0 chr6 84164623 84164802 -65352235 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 2 1227 448 93 27 0 chr6 84164804 84164879 -65352158 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 1227 410 227 172 7 chr6 84164879 84165017 -65352020 - B4 SINE B4 -46 246 85 2 1227 1035 223 203 24 chr6 84165484 84165824 -65351213 + MTD LTR MaLR 5 405 -14 2 1227 256 266 31 21 chr6 84166591 84166687 -65350350 + (CATATA)n Simple_repeat Simple_repeat 3 99 0 2 1227 386 293 17 33 chr6 84166701 84166881 -65350156 + (CATA)n Simple_repeat Simple_repeat 2 178 0 2 1227 232 336 9 9 chr6 84166911 84167022 -65350015 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 1227 378 0 0 0 chr6 84167704 84167746 -65349291 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1227 233 68 0 102 chr6 84168107 84168156 -65348881 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1227 1408 122 13 9 chr6 84168802 84169026 -65348011 + URR1B DNA MER1_type 1 225 0 2 1227 1397 130 73 141 chr6 84169908 84170249 -65346788 + ORR1A4 LTR MaLR 4 321 -8 2 1227 391 299 60 0 chr6 84170897 84171031 -65346006 - B1F1 SINE Alu -7 142 1 2 1227 1190 281 44 27 chr6 84171579 84171945 -65345092 + MTEa LTR MaLR 8 379 0 2 1227 24 32 0 0 chr6 84172186 84172217 -65344820 + AT_rich Low_complexity Low_complexity 1 31 0 2 1227 320 224 74 9 chr6 84172219 84172327 -65344710 - L1ME4a LINE L1 -2 6122 6008 2 1227 230 337 24 0 chr6 84172379 84172462 -65344575 + PB1D10 SINE Alu 1 85 -32 2 1227 483 18 0 0 chr6 84172494 84172550 -65344487 + (CAAG)n Simple_repeat Simple_repeat 1 56 0 2 1227 626 167 92 38 chr6 84172602 84172733 -65344304 + B1_Mur3 SINE Alu 7 144 -5 2 1227 323 308 29 0 chr6 84172737 84172879 -65344158 + L1MA4A LINE L1 5745 5923 -380 3 1227 1050 254 34 54 chr6 84173099 84173394 -65343643 + B4A SINE B4 2 290 -2 3 1227 630 0 0 0 chr6 84174857 84174927 -65342110 + (TCCC)n Simple_repeat Simple_repeat 1 70 0 3 1227 396 0 0 0 chr6 84175440 84175484 -65341553 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1227 297 0 0 0 chr6 84179306 84179339 -65337698 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1227 799 28 3 1 chr6 84179340 84179447 -65337590 - B1_Mus2 SINE Alu 0 147 42 3 1227 297 296 131 15 chr6 84181573 84181710 -65335327 - MLT1B LTR MaLR -237 153 1 3 1227 207 0 0 0 chr6 84181716 84181739 -65335298 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1227 250 267 53 98 chr6 84181739 84181872 -65335165 + PB1 SINE Alu 1 127 0 3 1227 235 182 30 15 chr6 84181888 84181955 -65335082 + GA-rich Low_complexity Low_complexity 3 70 0 3 1227 279 0 0 0 chr6 84182070 84182101 -65334936 + (CTG)n Simple_repeat Simple_repeat 1 31 0 3 1227 180 172 34 17 chr6 84182322 84182381 -65334656 + CT-rich Low_complexity Low_complexity 2 61 0 3 1227 389 354 61 14 chr6 84182527 84182739 -65334298 - MTE-int LTR MaLR -1349 231 10 3 1227 564 42 0 0 chr6 84182898 84182969 -65334068 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1227 249 187 0 0 chr6 84182969 84183044 -65333993 + GA-rich Low_complexity Low_complexity 1 75 0 3 1227 888 147 0 0 chr6 84183151 84183301 -65333736 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 3 1227 276 271 14 0 chr6 84185116 84185186 -65331851 + MTE2b LTR MaLR 1 71 -308 3 1227 1048 82 0 20 chr6 84185939 84185950 -65331087 - B1_Mus1 SINE Alu 0 148 140 3 1227 275 65 0 21 chr6 84185950 84185997 -65331040 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 3 1227 1048 82 0 20 chr6 84185997 84186135 -65330902 - B1_Mus1 SINE Alu -9 139 2 3 1227 225 0 0 0 chr6 84186586 84186611 -65330426 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1227 782 289 40 5 chr6 84186615 84186817 -65330220 + B4 SINE B4 80 288 -4 3 1227 669 143 18 0 chr6 84186908 84187020 -65330017 + B1_Mur1 SINE Alu 34 147 -2 3 1227 1036 198 92 125 chr6 84187348 84187740 -65329297 + MTE2a LTR MaLR 1 379 0 3 1227 336 246 77 110 chr6 84187800 84187955 -65329082 + MLT1G3 LTR MaLR 225 374 -221 3 1227 400 281 129 0 chr6 84188105 84188276 -65328761 - MER58B DNA MER1_type -103 238 46 3 1227 439 224 58 22 chr6 84188914 84189061 -65327976 + B3A SINE B2 2 162 -36 3 1227 1221 276 36 18 chr6 84189089 84189584 -65327453 + L1M2 LINE L1 4360 4863 -1280 3 1227 362 311 253 19 chr6 84189590 84189902 -65327135 + L1M2 LINE L1 4993 5377 -766 3 1227 618 252 96 14 chr6 84189928 84190131 -65326906 - MTE2b LTR MaLR -7 372 165 3 1227 341 22 0 21 chr6 84190131 84190178 -65326859 + (TTA)n Simple_repeat Simple_repeat 3 48 0 3 1227 524 267 0 8 chr6 84190182 84190303 -65326734 - B1_Mur1 SINE Alu -29 120 1 3 1227 654 281 28 0 chr6 84190303 84190475 -65326562 - MTE2b LTR MaLR -202 177 1 3 1227 299 306 250 18 chr6 84190475 84190528 -65326509 + L1MA6 LINE L1 5410 5501 -739 3 1227 186 43 0 0 chr6 84190528 84190551 -65326486 + (CAGA)n Simple_repeat Simple_repeat 3 25 0 3 1227 1217 313 86 10 chr6 84190551 84191211 -65325826 + L1MA6 LINE L1 5502 6228 -72 3 1227 304 279 25 0 chr6 84191226 84191305 -65325732 + PB1D10 SINE Alu 37 117 0 3 1227 285 316 0 0 chr6 84191313 84191389 -65325648 + ID4_ SINE ID 8 83 0 3 1227 324 0 0 0 chr6 84192188 84192224 -65324813 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1227 450 0 0 0 chr6 84192224 84192273 -65324764 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1227 429 266 78 78 chr6 84192362 84192529 -65324508 - B4A SINE B4 -124 168 2 3 1227 329 241 156 9 chr6 84192802 84192911 -65324126 + MLT1B LTR MaLR 44 168 -222 3 1227 893 302 74 32 chr6 84195070 84195104 -65321933 + MTE2b LTR MaLR 22 55 -324 3 1227 1108 219 106 43 chr6 84195104 84195149 -65321888 - ORR1D2 LTR MaLR 0 370 325 3 1227 402 108 0 0 chr6 84195149 84195223 -65321814 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 3 1227 1108 219 106 43 chr6 84195223 84195525 -65321512 - ORR1D2 LTR MaLR -46 324 1 3 1227 893 302 74 32 chr6 84195525 84195829 -65321208 + MTE2b LTR MaLR 56 374 -5 3 1227 827 314 70 28 chr6 84195948 84196380 -65320657 + FordPrefect_a DNA Tip100 59 508 0 3 1227 213 200 0 0 chr6 84197149 84197189 -65319848 + GA-rich Low_complexity Low_complexity 2 41 0 3 1227 563 358 72 9 chr6 84197592 84197815 -65319222 + MIRb SINE MIR 9 245 -23 3 1227 310 345 0 16 chr6 84198009 84198130 -65318907 - PB1 SINE Alu -8 119 1 3 1227 229 354 11 33 chr6 84198260 84198444 -65318593 + (TGG)n Simple_repeat Simple_repeat 1 180 0 3 1227 542 273 14 81 chr6 84198697 84198908 -65318129 + HAL1 LINE L1 10 206 -2301 3 1227 536 366 93 78 chr6 84199291 84200206 -65316831 + HAL1 LINE L1 648 1562 -945 3 1227 795 220 113 0 chr6 84200326 84200512 -65316525 - B3 SINE B2 -9 207 1 3 1227 1310 156 0 4 chr6 84200830 84201056 -65315981 + URR1B DNA MER1_type 1 225 0 3 1227 1771 156 76 43 chr6 84201235 84201604 -65315433 + ORR1C2 LTR MaLR 1 381 -3 3 1227 482 279 47 10 chr6 84201688 84201880 -65315157 + HAL1 LINE L1 2309 2507 0 3 1227 603 154 0 0 chr6 84202395 84202531 -65314506 + (TG)n Simple_repeat Simple_repeat 1 136 0 3 1227 786 249 6 6 chr6 84202531 84202709 -65314328 - B3A SINE B2 -16 182 5 3 1227 587 269 124 0 chr6 84202720 84202906 -65314131 - B3 SINE B2 -7 209 1 3 1227 237 250 54 81 chr6 84203741 84203815 -65313222 - MLT1J1 LTR MaLR -2 409 338 3 1227 441 0 0 0 chr6 84203823 84203872 -65313165 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1227 314 314 0 0 chr6 84203877 84203963 -65313074 - B4A SINE B4 -4 288 203 3 1227 292 298 9 19 chr6 84204517 84204623 -65312414 + CT-rich Low_complexity Low_complexity 1 105 0 3 1227 278 292 9 111 chr6 84205141 84205249 -65311788 - MLT1J1 LTR MaLR -172 272 176 3 1227 437 281 105 0 chr6 84205376 84205490 -65311547 + ID_B1 SINE B4 88 213 -11 3 1227 486 114 0 0 chr6 84205492 84205571 -65311466 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1227 1179 225 86 35 chr6 84205995 84206308 -65310729 - MTEb LTR MaLR -38 341 13 3 1227 266 327 39 10 chr6 84206603 84206705 -65310332 - RSINE1 SINE B4 -49 116 12 3 1227 351 0 0 0 chr6 84206975 84207014 -65310023 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1227 915 152 15 0 chr6 84207014 84207280 -65309757 + GA-rich Low_complexity Low_complexity 1 270 0 3 1227 1867 193 56 23 chr6 84207305 84207697 -65309340 - MTD LTR MaLR 0 419 15 3 1227 300 293 185 6 chr6 84207716 84207884 -65309153 - B4 SINE B4 -93 199 2 3 1227 180 296 111 22 chr6 84208430 84208565 -65308472 - MIRc SINE MIR -118 150 4 3 1227 665 235 58 53 chr6 84210426 84210615 -65306422 + RMER30 DNA MER1_type 12 201 -1 3 1227 261 0 0 0 chr6 84211605 84211634 -65305403 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1227 582 136 154 0 chr6 84211665 84211775 -65305262 - B3 SINE B2 -79 137 11 3 1227 275 71 24 0 chr6 84211854 84211896 -65305141 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1227 254 96 52 52 chr6 84211896 84211973 -65305064 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 3 1227 973 219 130 0 chr6 84212060 84212307 -65304730 + B4 SINE B4 2 280 -12 3 1227 288 0 0 0 chr6 84212318 84212350 -65304687 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1227 434 214 208 54 chr6 84213071 84213239 -65303798 + B4 SINE B4 3 196 -96 3 1227 910 142 0 17 chr6 84213425 84213597 -65303440 + G-rich Low_complexity Low_complexity 3 171 0 3 1227 1119 284 7 3 chr6 84214099 84214389 -65302648 + B4 SINE B4 1 291 -1 3 1227 924 231 31 0 chr6 84215142 84215337 -65301700 - B3 SINE B2 -15 201 1 3 1227 252 315 73 18 chr6 84216021 84216131 -65300906 + LTR40a LTR ERVL 125 240 -222 3 1227 269 216 98 90 chr6 84216187 84216309 -65300728 + LTR40a LTR ERVL 396 518 -1 3 1227 318 291 75 2 chr6 84219606 84219725 -65297312 + MLT1A1 LTR MaLR 239 396 -12 3 1227 257 246 35 80 chr6 84219994 84220089 -65296948 - B4 SINE B4 -199 93 2 3 1227 256 359 11 0 chr6 84220427 84220519 -65296518 + MIR3 SINE MIR 66 158 -50 3 1227 218 56 0 27 chr6 84220798 84220835 -65296202 + (CAGGC)n Simple_repeat Simple_repeat 5 40 0 3 1227 350 295 91 4 chr6 84221227 84221351 -65295686 + MIR SINE MIR 27 157 -111 3 1227 186 293 115 48 chr6 84222353 84222457 -65294580 + MIRm SINE MIR 9 119 -157 3 1227 251 370 36 36 chr6 84222640 84222780 -65294257 - MER91A DNA Tip100 -24 172 33 3 1227 440 266 5 82 chr6 84223479 84223663 -65293374 - Lx8 LINE L1 -3 7470 7301 3 1227 230 184 89 114 chr6 84223873 84223996 -65293041 + RLTR10B2 LTR ERVK 105 224 -141 3 1227 1010 214 57 4 chr6 84224617 84224861 -65292176 - Lx8 LINE L1 -363 7110 6854 3 1227 385 231 190 0 chr6 84225058 84225179 -65291858 - MER5A DNA MER1_type -8 181 38 3 1227 320 242 64 51 chr6 84225646 84225803 -65291234 - HAL1 LINE L1 -335 2172 2014 3 1227 216 0 0 0 chr6 84226019 84226043 -65290994 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 3 1227 334 350 90 41 chr6 84226207 84226451 -65290586 - HAL1 LINE L1 -1020 1487 1232 3 1227 322 102 20 0 chr6 84226464 84226513 -65290524 + HAL1-3A_ME LINE L1 1978 2027 -831 3 1227 591 92 0 0 chr6 84226549 84226636 -65290401 + (CA)n Simple_repeat Simple_repeat 1 87 0 3 1227 275 360 42 13 chr6 84226887 84227126 -65289911 - HAL1 LINE L1 -1455 1052 807 3 1227 384 294 78 91 chr6 84227221 84227453 -65289584 + MLT1F LTR MaLR 316 544 -4 3 1227 1809 219 40 20 chr6 84227510 84227906 -65289131 - MTD LTR MaLR -14 405 2 3 1227 952 290 36 32 chr6 84228421 84228524 -65288513 + B4A SINE B4 1 112 -180 3 1227 297 0 0 0 chr6 84228524 84228557 -65288480 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1227 952 290 36 32 chr6 84228557 84228734 -65288303 + B4A SINE B4 113 282 -10 3 1227 288 0 0 0 chr6 84228744 84228776 -65288261 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1227 2402 87 81 40 chr6 84229070 84229465 -65287572 + IAPLTR2a LTR ERVK 1 411 0 3 1227 279 327 58 29 chr6 84229681 84229854 -65287183 + L1M6 LINE L1 778 955 -5541 3 1227 242 0 0 57 chr6 84229918 84229953 -65287084 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1227 262 289 42 62 chr6 84230679 84230775 -65286262 - MLT1H LTR MaLR -362 187 94 4 1227 1016 185 11 11 chr6 84231421 84231601 -65285436 + ORR1D1 LTR MaLR 1 180 -194 4 1227 1230 232 62 14 chr6 84231601 84231877 -65285160 + ORR1C2 LTR MaLR 96 384 0 4 1227 514 225 66 8 chr6 84231912 84232033 -65285004 - B4A SINE B4 -162 130 3 4 1227 270 238 124 38 chr6 84232171 84232205 -65284832 + ORR1C2-int LTR MaLR 569 611 -1352 4 1227 1690 257 98 43 chr6 84232205 84232737 -65284300 + MT2B LTR ERVL 1 561 -40 4 1227 200 200 0 18 chr6 84232760 84232816 -65284221 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1227 313 96 19 0 chr6 84232899 84232951 -65284086 + MT2B LTR ERVL 548 600 -1 4 1227 338 301 55 12 chr6 84233017 84233209 -65283828 - L1MD LINE L1 -1459 4687 4482 4 1227 2842 97 26 67 chr6 84233383 84233878 -65283159 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1227 5731 52 4 19 chr6 84233878 84234635 -65282402 - IAPEz-int LTR ERVK 0 6481 5736 4 1227 2101 79 0 0 chr6 84234634 84234912 -65282125 - IAPEz-int LTR ERVK -4845 1636 1359 4 1227 3755 59 2 18 chr6 84234912 84235415 -65281622 - IAPEz-int LTR ERVK -5819 662 168 4 1227 235 327 0 0 chr6 84235415 84235470 -65281567 - RLTR27 LTR ERVK -34 275 221 4 1227 942 114 31 110 chr6 84235470 84235697 -65281340 - IAPEz-int LTR ERVK -1787 200 3 4 1227 2836 99 26 67 chr6 84235699 84236194 -65280843 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1227 739 234 64 12 chr6 84236400 84236573 -65280464 + B3A SINE B2 1 182 -16 4 1227 489 257 128 43 chr6 84236821 84237102 -65279935 + L1MD1 LINE L1 5743 6047 -195 4 1227 335 298 72 16 chr6 84237725 84237919 -65279118 + L1M5 LINE L1 4471 4675 -1471 4 1227 468 263 61 50 chr6 84237930 84238110 -65278927 + L1MD LINE L1 3045 3226 -2920 4 1227 491 270 188 42 chr6 84238380 84238689 -65278348 - RMER10A LTR ERVL -88 354 1 4 1227 578 239 155 6 chr6 84238698 84238866 -65278171 + B3A SINE B2 3 195 -3 4 1227 949 163 62 43 chr6 84238960 84239217 -65277820 + Lx9 LINE L1 7383 7644 0 4 1227 389 380 7 7 chr6 84239221 84239359 -65277678 - MLT1F2 LTR MaLR -357 203 66 4 1227 502 211 19 0 chr6 84239366 84239470 -65277567 + ID_B1 SINE B4 112 217 -7 4 1227 432 0 0 0 chr6 84239546 84239594 -65277443 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 1227 549 44 0 0 chr6 84239594 84239661 -65277376 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1227 237 338 37 15 chr6 84240059 84240194 -65276843 + L1MC4 LINE L1 7764 7901 -141 4 1227 670 145 19 13 chr6 84240588 84240742 -65276295 + CT-rich Low_complexity Low_complexity 1 155 0 4 1227 405 0 0 0 chr6 84241384 84241429 -65275608 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1227 720 180 86 15 chr6 84241713 84241899 -65275138 + ORR1E LTR MaLR 2 197 -177 4 1227 401 307 17 22 chr6 84242034 84242214 -65274823 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1227 189 171 0 0 chr6 84242242 84242277 -65274760 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 4 1227 3100 48 58 0 chr6 84242347 84242725 -65274312 + MTB LTR MaLR 1 400 0 4 1227 1106 191 19 14 chr6 84242896 84243108 -65273929 + B3 SINE B2 1 213 -3 4 1227 441 0 0 0 chr6 84243357 84243406 -65273631 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1227 693 235 62 53 chr6 84243565 84243790 -65273247 + B4 SINE B4 3 229 -63 4 1227 483 74 24 12 chr6 84243792 84243874 -65273163 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 1227 947 321 92 67 chr6 84243949 84244490 -65272547 - MER74A LTR ERVL 0 558 4 4 1227 543 334 78 6 chr6 84244615 84244886 -65272151 - L1M5 LINE L1 -2887 3259 2970 4 1227 673 226 98 21 chr6 84245641 84245835 -65271202 - B3 SINE B2 -7 209 1 4 1227 5846 55 81 7 chr6 84245840 84246592 -65270445 + RLTR13C2 LTR ERVK 1 808 0 4 1227 289 239 14 27 chr6 84246932 84247005 -65270032 - ID4 SINE ID -9 74 3 4 1227 913 241 45 115 chr6 84247903 84248116 -65268921 - B4 SINE B4 -10 282 82 4 1227 850 193 0 27 chr6 84248116 84248265 -65268772 + B1_Mur2 SINE Alu 5 149 0 4 1227 913 241 45 115 chr6 84248265 84248337 -65268700 - B4 SINE B4 -211 81 17 4 1227 282 56 0 0 chr6 84248436 84248472 -65268565 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 4 1227 433 222 22 0 chr6 84248515 84248605 -65268432 - RSINE1 SINE B4 -71 94 3 4 1227 307 305 112 79 chr6 84248819 84249036 -65268001 - B4A SINE B4 -10 282 54 4 1227 763 304 107 4 chr6 84249624 84249868 -65267169 - MLT1I LTR MaLR -4 407 139 4 1227 217 350 71 10 chr6 84250036 84250134 -65266903 + MIRb SINE MIR 35 138 -130 4 1227 876 238 65 5 chr6 84250889 84251075 -65265962 - B3 SINE B2 -15 201 5 4 1227 610 318 62 16 chr6 84251096 84251288 -65265749 + ID_B1 SINE B4 5 205 -19 4 1227 266 214 43 106 chr6 84251434 84251528 -65265509 + MLT1A1 LTR MaLR 18 105 -303 4 1227 481 248 10 0 chr6 84252267 84252368 -65264669 - PB1D10 SINE Alu -15 102 1 4 1227 184 259 0 53 chr6 84252406 84252463 -65264574 + MIRm SINE MIR 207 260 -16 4 1227 4926 127 35 77 chr6 84252601 84253542 -65263495 + RLTR13D6 LTR ERVK 1 902 0 4 1227 222 37 0 0 chr6 84253590 84253617 -65263420 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1227 1562 183 50 15 chr6 84253768 84254192 -65262845 - RLTR31A_Mm LTR ERVK 0 584 28 4 1227 309 318 18 0 chr6 84254776 84254886 -65262151 - L1M5 LINE L1 -528 5636 5525 4 1227 248 174 21 21 chr6 84256192 84256286 -65260751 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1227 968 238 100 12 chr6 84258583 84258834 -65258203 - B4 SINE B4 -18 274 2 4 1227 432 0 0 0 chr6 84259344 84259392 -65257645 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1227 543 170 0 0 chr6 84260121 84260221 -65256816 + (TTCA)n Simple_repeat Simple_repeat 2 101 0 4 1227 789 27 27 0 chr6 84262270 84262382 -65254655 + (GA)n Simple_repeat Simple_repeat 1 115 0 4 1227 423 0 0 0 chr6 84262889 84262936 -65254101 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1227 507 189 0 22 chr6 84263018 84263153 -65253884 + C-rich Low_complexity Low_complexity 2 133 0 4 1227 266 296 10 30 chr6 84263155 84263256 -65253781 + CT-rich Low_complexity Low_complexity 1 99 0 4 1227 260 212 15 0 chr6 84268283 84268349 -65248688 + GA-rich Low_complexity Low_complexity 2 68 0 4 1227 215 231 0 0 chr6 84268656 84268695 -65248342 - MIRc SINE MIR -119 149 111 4 1227 414 0 0 0 chr6 84269323 84269369 -65247668 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1227 273 352 110 39 chr6 84270026 84270153 -65246884 - B1F2 SINE Alu -11 138 3 4 1227 904 244 24 14 chr6 84272460 84272668 -65244369 + ID_B1 SINE B4 2 211 -13 4 1227 278 185 173 0 chr6 84272690 84272771 -65244266 + B3 SINE B2 122 216 0 4 1227 414 0 0 0 chr6 84272994 84273040 -65243997 + (AGATG)n Simple_repeat Simple_repeat 3 48 0 4 1227 567 327 127 31 chr6 84273263 84273617 -65243420 - LTR16D LTR ERVL -11 640 253 4 1227 422 342 155 45 chr6 84274074 84274558 -65242479 + MLT1H LTR MaLR 13 549 0 4 1227 338 332 32 62 chr6 84274692 84275010 -65242027 - HAL1-2a_MD LINE L1 -503 2521 2326 4 1227 271 212 45 40 chr6 84276184 84276361 -65240676 + (CAGA)n Simple_repeat Simple_repeat 2 179 0 4 1227 345 245 213 19 chr6 84276810 84276918 -65240119 + ID_B1 SINE B4 80 208 -16 4 1227 457 198 31 89 chr6 84276820 84276929 -65240108 + PB1D10 SINE Alu 9 114 -35 4 1227 432 112 33 11 chr6 84276930 84277020 -65240017 + GA-rich Low_complexity Low_complexity 3 94 0 4 1227 1225 69 6 6 chr6 84277028 84277202 -65239835 + (GGGAGA)n Simple_repeat Simple_repeat 5 178 0 4 1227 522 277 0 17 chr6 84278698 84278878 -65238159 + (TTCA)n Simple_repeat Simple_repeat 4 180 0 4 1227 199 316 86 99 chr6 84278912 84279285 -65237752 - L2b LINE L2 0 3375 3008 4 1228 908 230 14 9 chr6 84281419 84281616 -65235421 + ID_B1 SINE B4 2 205 -87 4 1228 246 128 0 0 chr6 84282100 84282139 -65234898 + (GGGA)n Simple_repeat Simple_repeat 2 40 0 4 1228 413 136 56 100 chr6 84282564 84282654 -65234383 + MTEa LTR MaLR 8 93 -286 4 1228 244 309 87 14 chr6 84282718 84282787 -65234250 + ID4 SINE ID 2 75 -8 4 1228 457 281 125 50 chr6 84282808 84283048 -65233989 + ORR1E LTR MaLR 87 344 -15 4 1228 191 342 129 17 chr6 84283198 84283314 -65233723 - L2b LINE L2 -1 3374 3246 4 1228 505 304 55 12 chr6 84283342 84283505 -65233532 + MER3 DNA MER1_type 18 187 -22 4 1228 231 369 145 28 chr6 84284343 84284840 -65232197 + L2 LINE L2 2509 3063 -356 4 1228 435 255 42 11 chr6 84285113 84285208 -65231829 + RSINE1 SINE B4 14 111 -54 4 1228 441 0 0 0 chr6 84285208 84285257 -65231780 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1228 226 364 78 55 chr6 84286198 84286326 -65230711 + MLT1K LTR MaLR 92 222 -373 4 1228 424 371 134 10 chr6 84286931 84287222 -65229815 + L1M5 LINE L1 4710 5036 -1110 4 1228 269 319 0 0 chr6 84287256 84287325 -65229712 - ID4_ SINE ID 0 83 15 4 1228 836 307 76 25 chr6 84287371 84287648 -65229389 + B4A SINE B4 2 292 0 4 1228 26 30 0 0 chr6 84287705 84287738 -65229299 + AT_rich Low_complexity Low_complexity 1 33 0 4 1228 621 296 0 21 chr6 84287805 84287950 -65229087 + B3 SINE B2 8 149 -67 4 1228 355 274 175 10 chr6 84287956 84288059 -65228978 + PB1D10 SINE Alu 1 120 0 4 1228 288 130 0 0 chr6 84288060 84288106 -65228931 + (GGA)n Simple_repeat Simple_repeat 3 48 0 4 1228 412 308 113 55 chr6 84288121 84288485 -65228552 - L1M4 LINE L1 -473 5711 5327 4 1228 245 234 71 47 chr6 84288600 84288685 -65228352 - ORR1E LTR MaLR 0 379 293 4 1228 386 291 64 63 chr6 84288708 84288951 -65228086 - ORR1E LTR MaLR -143 265 19 4 1228 1481 237 74 14 chr6 84289224 84289575 -65227462 + MTE2b LTR MaLR 1 372 -7 4 1228 395 298 117 79 chr6 84290357 84290751 -65226286 + L1M4c LINE L1 907 1315 -5069 4 1228 351 96 0 0 chr6 84291385 84291437 -65225600 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1228 544 295 0 0 chr6 84291534 84291666 -65225371 - ID_B1 SINE B4 -28 196 69 5 1228 231 197 13 13 chr6 84291671 84291748 -65225289 + RMER17C LTR ERVK 182 258 -152 5 1228 275 276 8 8 chr6 84291748 84292010 -65225027 + (TG)n Simple_repeat Simple_repeat 1 262 0 5 1228 266 221 23 8 chr6 84292032 84292164 -65224873 + (TG)n Simple_repeat Simple_repeat 1 134 0 5 1228 252 302 0 31 chr6 84292175 84292240 -65224797 - B4A SINE B4 -6 286 224 5 1228 792 228 106 0 chr6 84292250 84292439 -65224598 - B3 SINE B2 -7 209 1 5 1228 792 266 33 24 chr6 84292454 84292666 -65224371 - B4A SINE B4 -65 227 14 5 1228 321 140 0 0 chr6 84293151 84293208 -65223829 + (TCC)n Simple_repeat Simple_repeat 2 58 0 5 1228 443 322 105 42 chr6 84293251 84293442 -65223595 - B4 SINE B4 0 292 90 5 1228 303 194 14 29 chr6 84294371 84294440 -65222597 + ID4_ SINE ID 16 83 0 5 1228 553 210 34 34 chr6 84295580 84295728 -65221309 + B1F SINE Alu 1 148 -1 5 1228 697 238 53 0 chr6 84295755 84295906 -65221131 + RSINE1 SINE B4 6 164 -1 5 1228 242 330 44 103 chr6 84295906 84295949 -65221088 + B2_Mm2 SINE B2 5 187 -8 5 1228 1288 34 0 0 chr6 84295949 84296096 -65220941 + B1_Mus2 SINE Alu 1 147 0 5 1228 548 210 38 138 chr6 84296255 84296276 -65220761 + B4 SINE B4 75 218 -74 5 1228 1086 79 0 0 chr6 84296276 84296415 -65220622 + B1_Mus1 SINE Alu 2 140 -8 5 1228 411 38 0 0 chr6 84296422 84296475 -65220562 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1228 887 35 0 17 chr6 84296475 84296590 -65220447 + (GGGAGA)n Simple_repeat Simple_repeat 6 119 0 5 1228 431 355 32 0 chr6 84297021 84297176 -65219861 - Charlie23a DNA MER1_type -149 190 31 5 1228 715 269 13 85 chr6 84297526 84297762 -65219275 - ID_B1 SINE B4 -1 223 5 5 1228 424 264 77 8 chr6 84298788 84298918 -65218119 - ID_B1 SINE B4 -6 218 80 5 1228 1529 246 60 13 chr6 84300692 84301075 -65215962 - MTD LTR MaLR -14 405 5 5 1228 492 179 115 9 chr6 84301283 84301396 -65215641 - RMER30 DNA MER1_type -46 156 32 5 1228 248 305 65 79 chr6 84301586 84301725 -65215312 + MARNA DNA Mariner 145 281 -305 5 1228 742 293 98 28 chr6 84301732 84302092 -65214945 - LTR16B LTR ERVL -4 459 70 5 1228 517 196 0 25 chr6 84302366 84302528 -65214509 + (CCA)n Simple_repeat Simple_repeat 3 160 0 5 1228 442 321 24 24 chr6 84302531 84302700 -65214337 + HAL1-2a_MD LINE L1 2347 2515 -509 5 1228 452 279 28 55 chr6 84302673 84302855 -65214182 + HAL1-2a_MD LINE L1 2326 2502 -522 5 1228 1386 210 146 19 chr6 84304182 84304546 -65212491 - MTD LTR MaLR 0 419 10 5 1228 330 270 13 13 chr6 84305029 84305104 -65211933 - ID4 SINE ID -1 82 8 5 1228 378 231 8 122 chr6 84305125 84305248 -65211789 - PB1D10 SINE Alu -8 109 1 5 1228 432 265 64 17 chr6 84305764 84305908 -65211129 - MLT1D LTR MaLR -2 622 389 5 1228 324 301 117 29 chr6 84306016 84306153 -65210884 + RMER15 LTR ERVL 273 421 -154 5 1228 303 264 136 19 chr6 84306489 84306651 -65210386 - Lx8 LINE L1 -327 7146 6966 5 1228 201 296 93 31 chr6 84307033 84307162 -65209875 - L2 LINE L2 -462 2957 2821 5 1228 738 0 0 0 chr6 84309038 84309120 -65207917 + (GGA)n Simple_repeat Simple_repeat 1 82 0 5 1228 226 268 0 40 chr6 84310589 84310663 -65206374 + (CACCAT)n Simple_repeat Simple_repeat 5 75 0 5 1228 185 345 171 22 chr6 84310672 84310853 -65206184 - MIRb SINE MIR 0 268 61 5 1228 206 273 0 0 chr6 84311395 84311450 -65205587 + GA-rich Low_complexity Low_complexity 2 56 0 5 1228 210 206 0 0 chr6 84311451 84311514 -65205523 + (TGG)n Simple_repeat Simple_repeat 2 64 0 5 1228 558 0 0 0 chr6 84312729 84312791 -65204246 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1228 27 0 0 0 chr6 84313014 84313041 -65203996 + AT_rich Low_complexity Low_complexity 1 27 0 5 1228 312 27 0 0 chr6 84313351 84313388 -65203649 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1228 1107 238 68 8 chr6 84313498 84313761 -65203276 - B4 SINE B4 -10 282 4 5 1228 210 135 0 75 chr6 84313839 84313879 -65203158 - L2c LINE L2 -20 3367 3331 5 1228 822 253 48 75 chr6 84314656 84314875 -65202162 - B4 SINE B4 -4 288 82 5 1228 522 0 0 0 chr6 84314875 84314933 -65202104 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1228 822 253 48 75 chr6 84314933 84315008 -65202029 - B4 SINE B4 -211 81 2 5 1228 576 0 0 0 chr6 84317349 84317413 -65199624 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1228 223 196 71 0 chr6 84317434 84317490 -65199547 + (CATG)n Simple_repeat Simple_repeat 1 60 0 5 1228 770 196 82 18 chr6 84317543 84317714 -65199323 - B3 SINE B2 0 216 35 5 1228 726 335 98 0 chr6 84317660 84317914 -65199123 - B4A SINE B4 -8 284 6 5 1228 599 149 26 0 chr6 84318213 84318327 -65198710 + CT-rich Low_complexity Low_complexity 5 121 0 5 1228 368 210 47 70 chr6 84318327 84318455 -65198582 - L1MB7 LINE L1 -11 6173 6049 5 1228 874 296 38 23 chr6 84318705 84318971 -65198066 + B4 SINE B4 1 270 -22 5 1228 435 19 0 0 chr6 84318972 84319024 -65198013 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1228 458 179 19 15 chr6 84319757 84319830 -65197207 + (TCCA)n Simple_repeat Simple_repeat 1 85 -121 5 1228 188 67 33 0 chr6 84319830 84319860 -65197177 + (CCCA)n Simple_repeat Simple_repeat 2 32 0 5 1228 458 179 19 15 chr6 84319860 84319962 -65197075 + (TCCA)n Simple_repeat Simple_repeat 86 206 0 5 1228 282 387 9 0 chr6 84320072 84320183 -65196854 - L2c LINE L2 -4 3383 3272 5 1228 320 242 154 21 chr6 84322063 84322229 -65194808 - MTEa LTR MaLR 0 419 235 5 1228 775 205 11 85 chr6 84322502 84322678 -65194359 + RSINE1 SINE B4 1 163 -2 5 1228 386 309 29 37 chr6 84323046 84323291 -65193746 - L1MC1 LINE L1 -276 6057 5815 5 1228 875 285 27 44 chr6 84323329 84323667 -65193370 - RLTR15 LTR ERVK -20 339 8 5 1228 409 274 24 71 chr6 84323670 84323796 -65193241 - B1_Mur3 SINE Alu -13 136 17 5 1228 318 276 57 11 chr6 84323826 84323914 -65193123 + MLT1A0 LTR MaLR 2 93 -272 5 1228 315 196 0 0 chr6 84323918 84323974 -65193063 + PB1D10 SINE Alu 15 70 -47 5 1228 285 290 0 0 chr6 84324914 84324976 -65192061 + ID_B1 SINE B4 109 170 -54 5 1228 222 333 33 33 chr6 84324976 84325004 -65192033 + PB1D10 SINE Alu 28 117 0 5 1228 1356 41 0 0 chr6 84325084 84325328 -65191709 + (TG)n Simple_repeat Simple_repeat 1 244 0 5 1228 751 296 56 35 chr6 84326028 84326312 -65190725 + B4 SINE B4 3 292 0 5 1228 714 258 32 19 chr6 84327718 84327876 -65189161 + B3A SINE B2 1 160 -38 5 1228 237 65 0 0 chr6 84327881 84327912 -65189125 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1228 215 156 38 38 chr6 84327928 84328008 -65189029 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 5 1228 195 261 28 42 chr6 84328580 84328652 -65188385 - MER5B DNA MER1_type -82 96 26 5 1228 233 135 19 0 chr6 84328672 84328724 -65188313 + (TCTCTG)n Simple_repeat Simple_repeat 5 57 0 5 1228 291 229 14 0 chr6 84329679 84329749 -65187288 + B4 SINE B4 2 72 -220 5 1228 268 246 95 14 chr6 84329781 84329852 -65187185 + B4A SINE B4 2 78 -214 5 1228 1686 264 19 24 chr6 84329852 84330267 -65186770 - MTD LTR MaLR 0 419 7 5 1228 627 301 23 6 chr6 84330291 84330468 -65186569 + B4A SINE B4 91 270 -22 5 1228 513 0 0 0 chr6 84330489 84330546 -65186491 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1228 731 299 63 13 chr6 84330811 84331126 -65185911 + L1ME1 LINE L1 5676 6006 -173 5 1228 657 293 4 12 chr6 84332222 84332461 -65184576 + B4A SINE B4 9 288 -4 5 1228 720 107 0 0 chr6 84332500 84332612 -65184425 + (CA)n Simple_repeat Simple_repeat 2 113 0 5 1228 795 208 0 13 chr6 84333212 84333368 -65183669 - MTEa LTR MaLR -47 332 179 5 1228 247 236 18 0 chr6 84333371 84333426 -65183611 - MTEa LTR MaLR -323 56 1 5 1228 192 307 128 7 chr6 84334465 84334549 -65182488 + MIRb SINE MIR 93 256 -12 5 1228 214 346 0 0 chr6 84334549 84334601 -65182436 + L2b LINE L2 3304 3355 -20 5 1228 379 318 91 0 chr6 84335057 84335167 -65181870 + ID_B1 SINE B4 29 148 -76 5 1228 192 279 78 85 chr6 84335520 84335673 -65181364 - L2 LINE L2 -2744 675 524 5 1228 411 303 9 0 chr6 84336304 84336413 -65180624 + ID_B1 SINE B4 94 203 -21 5 1228 22 35 0 0 chr6 84337280 84337309 -65179728 + AT_rich Low_complexity Low_complexity 1 29 0 5 1228 798 256 16 11 chr6 84337326 84337508 -65179529 - B3A SINE B2 -15 183 1 5 1228 283 355 11 11 chr6 84337953 84338047 -65178990 - ID_B1 SINE B4 -30 194 101 5 1228 1209 111 0 0 chr6 84338200 84338543 -65178494 + (TCC)n Simple_repeat Simple_repeat 1 343 0 5 1228 226 255 0 0 chr6 84338698 84338745 -65178292 + MLT1L LTR MaLR 352 398 -212 5 1228 192 149 0 0 chr6 84339349 84339396 -65177641 + (TCTG)n Simple_repeat Simple_repeat 1 47 0 5 1228 242 321 36 0 chr6 84339442 84339526 -65177511 - MLT1G1 LTR MaLR -297 282 196 5 1228 327 130 0 0 chr6 84340419 84340473 -65176564 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1228 982 221 53 0 chr6 84340542 84340750 -65176287 + ID_B1 SINE B4 1 219 -5 5 1228 1017 301 58 20 chr6 84340965 84341307 -65175730 - L3 LINE CR1 -509 3980 3626 5 1228 1604 225 29 52 chr6 84341436 84341820 -65175217 + MTEa LTR MaLR 5 379 0 5 1228 333 0 0 0 chr6 84342216 84342253 -65174784 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1228 423 0 0 0 chr6 84342253 84342299 -65174738 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1228 316 300 144 17 chr6 84342932 84343105 -65173932 - L3 LINE CR1 -2157 2332 2138 5 1228 213 371 10 0 chr6 84343297 84343394 -65173643 + MIRb SINE MIR 46 143 -125 5 1228 1340 251 83 14 chr6 84345019 84345451 -65171586 + ORSL-2b DNA Tip100 36 497 -11 5 1228 1077 254 50 93 chr6 84345607 84345679 -65171358 - B4 SINE B4 0 292 230 5 1228 1295 101 16 0 chr6 84345679 84345868 -65171169 - B2_Mm1t SINE B2 0 193 2 6 1228 1077 254 50 93 chr6 84345868 84346095 -65170942 - B4 SINE B4 -63 229 6 5 1228 351 0 0 0 chr6 84346217 84346256 -65170781 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 1228 193 250 22 0 chr6 84346275 84346367 -65170670 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 6 1228 950 102 7 0 chr6 84347305 84347442 -65169595 + URR1B DNA MER1_type 88 225 0 6 1228 549 277 42 32 chr6 84347555 84347745 -65169292 + Tigger7 DNA MER2_type 2272 2463 -28 6 1228 180 176 0 0 chr6 84347781 84347815 -65169222 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1228 411 253 7 1 chr6 84348183 84348278 -65168759 - B3 SINE B2 -94 99 1 6 1228 228 328 58 51 chr6 84349028 84349166 -65167871 - MLT1A1 LTR MaLR -2 406 268 6 1228 268 214 35 9 chr6 84349416 84349529 -65167508 + GA-rich Low_complexity Low_complexity 5 120 0 6 1228 230 353 61 73 chr6 84350672 84350721 -65166316 - B3 SINE B2 -8 208 134 6 1228 303 311 0 0 chr6 84350721 84350782 -65166255 - B4A SINE B4 0 292 232 6 1228 230 353 61 73 chr6 84350782 84350837 -65166200 - B3 SINE B2 -8 133 46 6 1228 587 214 59 7 chr6 84350921 84351067 -65165970 + MTD LTR MaLR 223 405 -14 6 1228 323 361 103 45 chr6 84351402 84351733 -65165304 - L1M5 LINE L1 -1244 4902 4553 6 1228 30 27 0 0 chr6 84352266 84352303 -65164734 + AT_rich Low_complexity Low_complexity 1 37 0 6 1228 592 212 115 0 chr6 84352323 84352436 -65164601 - RSINE1 SINE B4 -36 129 4 6 1228 479 31 15 0 chr6 84353238 84353303 -65163734 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1228 427 319 145 31 chr6 84353307 84353941 -65163096 + L1MEf LINE L1 1122 1827 -4588 6 1228 303 145 0 0 chr6 84353945 84354014 -65163023 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1228 298 278 180 5 chr6 84354189 84354395 -65162642 + L1MEf LINE L1 2044 2285 -4115 6 1228 689 308 11 11 chr6 84354762 84354949 -65162088 + B3A SINE B2 9 195 -3 6 1228 342 340 70 98 chr6 84355164 84355451 -65161586 + B4 SINE B4 2 280 -12 6 1228 844 259 137 39 chr6 84355509 84355837 -65161200 + ORR1E LTR MaLR 1 379 0 6 1228 506 91 13 0 chr6 84355926 84356003 -65161034 + (GA)n Simple_repeat Simple_repeat 1 78 0 6 1228 435 184 10 20 chr6 84356504 84356604 -65160433 + MER121 Unknown Unknown 129 227 -185 6 1228 209 273 0 0 chr6 84357224 84357268 -65159769 - MIR3 SINE MIR -19 189 146 6 1228 256 260 230 0 chr6 84358108 84358208 -65158829 - MIRb SINE MIR -108 160 38 6 1228 243 337 11 0 chr6 84358427 84358516 -65158521 + MIRc SINE MIR 51 140 -128 6 1228 320 0 25 0 chr6 84358911 84358951 -65158086 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1228 595 342 114 4 chr6 84358988 84359243 -65157794 - B4A SINE B4 0 292 10 6 1228 294 53 35 17 chr6 84359302 84359360 -65157677 + (CAAAAA)n Simple_repeat Simple_repeat 3 61 0 6 1228 320 348 29 0 chr6 84360550 84360688 -65156349 + MER91A DNA Tip100 9 150 -46 6 1228 836 192 0 0 chr6 84361365 84361511 -65155526 + B1_Mus1 SINE Alu 3 148 0 6 1228 1403 244 108 8 chr6 84362960 84363320 -65153717 + MTD LTR MaLR 24 419 0 6 1228 297 277 138 0 chr6 84363970 84364064 -65152973 + Cheshire DNA MER1_type 157 263 -2157 6 1228 378 319 25 83 chr6 84364936 84364982 -65152055 + ID SINE ID 49 85 -139 6 1228 214 357 55 35 chr6 84364982 84365127 -65151910 + B1F SINE Alu 2 149 0 6 1228 264 122 0 0 chr6 84365197 84365238 -65151799 + (CCA)n Simple_repeat Simple_repeat 1 41 0 6 1228 893 235 39 14 chr6 84365349 84365381 -65151656 - B3 SINE B2 0 216 187 6 1228 393 22 0 0 chr6 84365381 84365427 -65151610 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1228 893 235 39 14 chr6 84365427 84365601 -65151436 - B3 SINE B2 -30 186 5 6 1228 1023 249 93 54 chr6 84365942 84366222 -65150815 - B4A SINE B4 -1 291 1 6 1228 186 43 0 0 chr6 84366237 84366260 -65150777 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1228 958 210 39 6 chr6 84366260 84366442 -65150595 - B3 SINE B2 -2 214 27 6 1228 198 103 0 0 chr6 84366898 84366927 -65150110 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 6 1228 861 194 311 0 chr6 84368770 84368992 -65148045 + B4 SINE B4 2 292 0 6 1228 328 293 13 60 chr6 84370148 84370297 -65146740 - LTR16A1 LTR ERVL -29 427 286 6 1228 618 14 0 0 chr6 84371252 84371323 -65145714 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 6 1228 435 38 0 0 chr6 84371425 84371478 -65145559 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1228 257 330 149 18 chr6 84372277 84372391 -65144646 - MLT1A1 LTR MaLR -279 129 1 6 1228 180 206 0 0 chr6 84372392 84372426 -65144611 + L4 LINE RTE 1789 1822 -207 6 1228 264 222 32 0 chr6 84372918 84372981 -65144056 - MLT1J2 LTR MaLR 0 448 384 6 1228 229 333 27 0 chr6 84373104 84373179 -65143858 - MLT1J2 LTR MaLR -328 184 108 6 1228 190 299 29 15 chr6 84373671 84373739 -65143298 - L2a LINE L2 -70 3356 3288 6 1228 729 312 49 13 chr6 84373943 84374167 -65142870 + B4 SINE B4 17 248 -44 6 1228 342 0 0 0 chr6 84374188 84374226 -65142811 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1228 23 0 0 0 chr6 84374361 84374384 -65142653 + AT_rich Low_complexity Low_complexity 1 23 0 6 1228 238 294 27 81 chr6 84374919 84375030 -65142007 + MLT2B2 LTR ERVL 329 433 -129 6 1228 1021 310 0 17 chr6 84375350 84375645 -65141392 + B4 SINE B4 2 291 -1 6 1228 369 0 0 0 chr6 84375664 84375705 -65141332 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1228 264 188 0 0 chr6 84375715 84375784 -65141253 + GA-rich Low_complexity Low_complexity 2 70 0 6 1228 230 305 105 0 chr6 84376953 84377058 -65139979 - MamRep434 DNA TcMar -302 124 9 6 1228 250 266 103 68 chr6 84377161 84377278 -65139759 - L2b LINE L2 -1 3374 3254 6 1228 255 333 112 7 chr6 84377347 84377502 -65139535 - MIRc SINE MIR -93 175 1 6 1228 419 151 0 11 chr6 84378671 84378765 -65138272 + (TG)n Simple_repeat Simple_repeat 1 93 0 6 1228 307 248 23 23 chr6 84378784 84378912 -65138125 + (TATG)n Simple_repeat Simple_repeat 4 131 0 6 1228 371 21 0 20 chr6 84378918 84378967 -65138070 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1228 771 299 70 70 chr6 84379562 84379921 -65137116 + ORR1E LTR MaLR 1 359 0 6 1228 193 210 32 0 chr6 84382863 84382925 -65134112 + CT-rich Low_complexity Low_complexity 1 64 0 6 1228 303 28 0 0 chr6 84382976 84383012 -65134025 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1228 510 267 19 64 chr6 84383495 84383651 -65133386 + B1F SINE Alu 1 149 0 6 1228 816 294 5 10 chr6 84383659 84383858 -65133179 + ID_B1 SINE B4 1 198 -26 6 1228 387 0 0 0 chr6 84383863 84383906 -65133131 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 6 1228 1020 302 7 67 chr6 84385433 84385731 -65131306 + B4 SINE B4 9 288 -4 6 1228 246 32 0 0 chr6 84385745 84385776 -65131261 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1228 368 87 29 0 chr6 84385776 84385845 -65131192 + (CAGAGA)n Simple_repeat Simple_repeat 6 76 0 6 1228 352 331 29 36 chr6 84385847 84385985 -65131052 - MER3 DNA MER1_type -70 139 3 6 1228 871 224 24 19 chr6 84386912 84387121 -65129916 - ORR1D1-int LTR MaLR -1160 210 1 6 1228 957 174 210 39 chr6 84387121 84387407 -65129630 - ORR1D1 LTR MaLR 0 374 40 6 1228 355 275 160 14 chr6 84387853 84387997 -65129040 + MIRc SINE MIR 1 165 -103 6 1228 1080 0 0 93 chr6 84388077 84388270 -65128767 + (TTTCC)n Simple_repeat Simple_repeat 5 179 0 6 1228 685 111 38 86 chr6 84388270 84388826 -65128211 + CT-rich Low_complexity Low_complexity 1 529 0 6 1228 937 62 0 78 chr6 84388826 84389018 -65128019 + (TTCCC)n Simple_repeat Simple_repeat 2 178 0 6 1228 852 63 0 0 chr6 84389027 84389138 -65127899 + (TCTCC)n Simple_repeat Simple_repeat 4 114 0 6 1228 537 253 14 132 chr6 84389138 84389161 -65127876 - B2_Mm2 SINE B2 -9 186 166 6 1228 318 26 0 0 chr6 84389161 84389200 -65127837 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1228 989 235 22 1 chr6 84389200 84389385 -65127652 - B3 SINE B2 -28 188 2 6 1228 943 281 110 30 chr6 84389387 84389861 -65127176 - L1MC1 LINE L1 -9 6324 5813 6 1228 244 238 59 12 chr6 84389869 84389954 -65127083 - L1MC1 LINE L1 -832 5501 5413 6 1228 369 266 192 0 chr6 84389979 84390065 -65126972 - L1MC1 LINE L1 -773 5373 5260 6 1228 1069 226 118 62 chr6 84390065 84390405 -65126632 + ORR1E LTR MaLR 1 359 0 6 1228 369 266 192 0 chr6 84390405 84390521 -65126516 - L1MC1 LINE L1 -887 5259 5134 6 1228 1808 105 41 144 chr6 84390522 84390889 -65126148 - ORR1A4 LTR MaLR 0 329 1 6 1228 592 278 23 0 chr6 84391076 84391209 -65125828 + RSINE1 SINE B4 2 137 -28 6 1228 723 291 8 12 chr6 84391276 84391482 -65125555 - B4 SINE B4 -2 290 84 6 1228 297 220 0 0 chr6 84391619 84391669 -65125368 - B4A SINE B4 -240 52 3 6 1228 293 281 80 32 chr6 84392973 84393098 -65123939 - MLT1A1 LTR MaLR -8 400 270 6 1228 450 0 0 0 chr6 84393188 84393238 -65123799 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1228 615 312 47 55 chr6 84393241 84393495 -65123542 - B4 SINE B4 -31 261 10 6 1228 22 0 0 0 chr6 84393503 84393525 -65123512 + AT_rich Low_complexity Low_complexity 1 22 0 6 1228 458 224 17 70 chr6 84393529 84393644 -65123393 - B3 SINE B2 0 216 108 6 1228 546 273 7 21 chr6 84393640 84393782 -65123255 - RMER30 DNA MER1_type -43 159 20 6 1228 264 237 34 0 chr6 84393848 84393907 -65123130 + Charlie12 DNA MER1_type 2808 2868 -5 6 1228 222 234 0 0 chr6 84393967 84394014 -65123023 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 6 1228 243 319 71 38 chr6 84394552 84394764 -65122273 + L2c LINE L2 3100 3318 -69 6 1228 191 228 34 112 chr6 84395216 84395305 -65121732 - L3 LINE CR1 -1658 2831 2750 6 1228 180 0 0 0 chr6 84395366 84395386 -65121651 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1228 746 269 19 14 chr6 84396135 84396350 -65120687 + B3 SINE B2 1 216 0 6 1228 1178 263 122 58 chr6 84396657 84396792 -65120245 - Lx8 LINE L1 0 7473 7349 6 1228 788 147 83 56 chr6 84396792 84396936 -65120101 + B1_Mus1 SINE Alu 1 148 0 6 1228 1178 263 122 58 chr6 84396936 84397316 -65119721 - Lx8 LINE L1 -125 7348 6925 6 1228 367 327 13 57 chr6 84397400 84397559 -65119478 + MLT1A1 LTR MaLR 255 406 -2 7 1228 246 250 51 26 chr6 84398405 84398483 -65118554 - MIR3 SINE MIR 0 208 129 7 1228 294 29 0 0 chr6 84399706 84399741 -65117296 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1228 248 247 96 53 chr6 84400031 84400125 -65116912 - L1M5 LINE L1 -539 5585 5488 7 1228 36 23 0 0 chr6 84400309 84400352 -65116685 + AT_rich Low_complexity Low_complexity 1 43 0 7 1228 222 118 0 0 chr6 84400417 84400451 -65116586 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 1228 8213 145 43 11 chr6 84400470 84402346 -65114691 - Lx5 LINE L1 -49 7001 5077 7 1228 663 103 41 0 chr6 84402343 84402440 -65114597 - Lx5 LINE L1 -1717 4160 4060 7 1228 8988 139 24 130 chr6 84402438 84402924 -65114113 - Lx5 LINE L1 -2748 3129 2635 7 1228 303 49 0 0 chr6 84402924 84402965 -65114072 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1228 405 0 0 0 chr6 84402965 84403009 -65114028 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1228 8988 139 24 130 chr6 84403009 84403172 -65113865 - Lx5 LINE L1 -3243 2634 2492 7 1228 999 41 0 0 chr6 84403172 84403294 -65113743 + B1_Mus1 SINE Alu 26 147 -1 7 1228 8988 139 24 130 chr6 84403294 84403694 -65113343 - Lx5 LINE L1 -3243 2491 2140 7 1228 1156 78 0 0 chr6 84403694 84403836 -65113201 - B1_Mm SINE Alu -5 142 1 7 1228 8988 139 24 129 chr6 84403836 84404821 -65112216 - Lx5 LINE L1 -3738 2139 1200 7 1228 3470 30 2 0 chr6 84404821 84405214 -65111823 - MTA_Mm LTR MaLR -2 394 1 7 1228 1312 231 22 25 chr6 84405214 84405429 -65111608 - Lx5 LINE L1 -6529 1199 984 7 1228 251 296 55 27 chr6 84405826 84405899 -65111138 - ID4_ SINE ID 0 83 9 7 1228 257 366 21 7 chr6 84405988 84406131 -65110906 + L1MD LINE L1 5495 5639 -2356 7 1228 590 270 121 95 chr6 84406147 84406495 -65110542 - MTEa LTR MaLR -5 374 18 7 1228 702 60 0 0 chr6 84406625 84406725 -65110312 + (TG)n Simple_repeat Simple_repeat 1 100 0 7 1228 442 329 117 19 chr6 84406733 84406947 -65110090 - B4A SINE B4 0 292 58 7 1228 431 277 10 29 chr6 84407056 84407160 -65109877 + PB1D10 SINE Alu 9 110 -7 7 1228 391 277 20 120 chr6 84407174 84407424 -65109613 + L1M2 LINE L1 4604 4828 -1315 7 1228 553 198 26 18 chr6 84407453 84407566 -65109471 + B1F SINE Alu 22 135 -14 7 1228 303 272 11 80 chr6 84407586 84407674 -65109363 + ID4_ SINE ID 2 83 0 7 1228 188 182 0 22 chr6 84407720 84407765 -65109272 + G-rich Low_complexity Low_complexity 3 46 0 7 1228 346 259 139 40 chr6 84407779 84407952 -65109085 + L1M2 LINE L1 4884 5073 -1070 7 1228 354 329 59 7 chr6 84408039 84408192 -65108845 + L1M2 LINE L1 5227 5387 -756 7 1228 782 122 13 13 chr6 84408213 84408363 -65108674 + (TA)n Simple_repeat Simple_repeat 2 151 0 7 1228 2992 277 63 17 chr6 84408607 84409611 -65107426 - RMER1C Other Other 0 1342 384 7 1228 1340 62 0 14 chr6 84410113 84410326 -65106711 + (TTCTCC)n Simple_repeat Simple_repeat 1 209 0 7 1229 210 37 0 0 chr6 84410415 84410442 -65106595 + (TCTCTG)n Simple_repeat Simple_repeat 3 29 0 7 1229 207 69 0 0 chr6 84410454 84410483 -65106554 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1229 184 266 123 15 chr6 84411369 84411434 -65105603 + L2 LINE L2 98 169 -3250 7 1229 672 267 75 25 chr6 84412080 84412280 -65104757 + MTEa LTR MaLR 22 231 -148 7 1229 2568 183 20 18 chr6 84412245 84412680 -65104357 + MT2A LTR ERVL 9 448 -85 7 1229 437 0 19 0 chr6 84412680 84412733 -65104304 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1229 2568 183 20 18 chr6 84412733 84412752 -65104285 + MT2A LTR ERVL 449 464 -69 7 1229 728 191 46 31 chr6 84412766 84412942 -65104095 + MTEa LTR MaLR 184 375 -4 7 1229 343 343 65 15 chr6 84413305 84413506 -65103531 + B4A SINE B4 1 211 -81 7 1229 461 104 13 0 chr6 84413514 84413591 -65103446 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 1229 545 296 0 131 chr6 84413619 84413794 -65103243 + B4 SINE B4 1 152 -140 7 1229 309 51 0 0 chr6 84413824 84413863 -65103174 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1229 267 286 142 9 chr6 84414591 84414697 -65102340 - MIRc SINE MIR -147 121 2 7 1229 266 250 45 127 chr6 84415339 84415449 -65101588 - MLT1A0 LTR MaLR -264 101 1 7 1229 723 267 30 60 chr6 84415614 84415849 -65101188 - B4A SINE B4 0 292 65 7 1229 378 0 0 0 chr6 84416652 84416694 -65100343 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 7 1229 441 0 0 0 chr6 84416694 84416742 -65100295 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1229 190 367 37 37 chr6 84416854 84416936 -65100101 + L3 LINE CR1 3553 3634 -855 7 1229 378 0 0 0 chr6 84417094 84417136 -65099901 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1229 1084 253 18 54 chr6 84417136 84417415 -65099622 - B4 SINE B4 -23 269 2 7 1229 449 262 106 7 chr6 84417449 84417591 -65099446 - MER91B DNA Tip100 0 190 35 7 1229 384 181 70 35 chr6 84417905 84417991 -65099046 + RSINE1 SINE B4 67 155 -10 7 1229 208 196 0 21 chr6 84417991 84418038 -65098999 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 7 1229 279 329 49 18 chr6 84418586 84418750 -65098287 - L1MC LINE L1 -2091 5791 5623 7 1229 302 80 20 0 chr6 84418923 84418973 -65098064 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1229 819 216 37 6 chr6 84418986 84419149 -65097888 - B3A SINE B2 -30 168 1 7 1229 231 269 23 158 chr6 84419149 84419192 -65097845 + RMER15 LTR ERVL 336 354 -221 7 1229 1631 178 107 6 chr6 84419283 84419639 -65097398 - RMER1C Other Other 0 1342 951 7 1229 647 192 83 0 chr6 84420104 84420224 -65096813 + B1_Mur2 SINE Alu 2 131 -18 7 1229 348 24 0 0 chr6 84420229 84420270 -65096767 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 7 1229 279 0 0 0 chr6 84420581 84420612 -65096425 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1229 198 0 0 0 chr6 84420612 84420633 -65096404 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1229 822 197 0 7 chr6 84420692 84420830 -65096207 - B3 SINE B2 -79 137 1 7 1229 201 133 43 43 chr6 84421348 84421395 -65095642 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 7 1229 378 0 0 0 chr6 84421396 84421438 -65095599 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1229 250 245 0 0 chr6 84421463 84421512 -65095525 - RSINE1 SINE B4 -53 112 64 7 1229 1444 169 50 20 chr6 84421605 84421907 -65095130 + RMER1C Other Other 1031 1341 -1 7 1229 340 310 33 40 chr6 84423646 84423797 -65093240 - L2 LINE L2 -793 2626 2477 7 1229 4801 119 22 10 chr6 84423899 84424626 -65092411 + Lx2 LINE L1 5909 6644 -353 7 1229 1434 109 4 35 chr6 84424627 84424855 -65092182 + Lx2 LINE L1 6777 6997 0 7 1229 965 272 13 43 chr6 84425021 84425321 -65091716 - B4A SINE B4 0 292 2 7 1229 837 269 42 12 chr6 84425694 84425935 -65091102 + B4 SINE B4 40 287 -5 7 1229 288 0 0 0 chr6 84426121 84426153 -65090884 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1229 189 0 0 0 chr6 84426153 84426173 -65090864 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1229 420 20 0 0 chr6 84426237 84426286 -65090751 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1229 228 200 80 0 chr6 84426287 84426337 -65090700 + RSINE1 SINE B4 112 165 0 7 1229 264 149 0 0 chr6 84426337 84426384 -65090653 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1229 210 313 0 24 chr6 84426481 84426566 -65090471 + L2 LINE L2 2764 2846 -573 7 1229 291 374 65 47 chr6 84427054 84427329 -65089708 - L4 LINE RTE -13 2016 1737 7 1229 321 125 0 0 chr6 84427815 84427871 -65089166 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1229 627 324 4 121 chr6 84427893 84427977 -65089060 - B4A SINE B4 -6 286 221 7 1229 664 226 20 46 chr6 84427977 84428130 -65088907 - B1F2 SINE Alu 0 149 1 7 1229 627 324 4 121 chr6 84428130 84428277 -65088760 - B4A SINE B4 -72 220 82 7 1229 276 270 68 0 chr6 84428301 84428375 -65088662 - B4A SINE B4 -199 93 15 7 1229 194 261 22 0 chr6 84428401 84428447 -65088590 - L4 LINE RTE -1255 774 728 7 1229 261 246 14 0 chr6 84428707 84428776 -65088261 + CT-rich Low_complexity Low_complexity 1 70 0 7 1229 390 42 0 0 chr6 84428776 84428824 -65088213 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1229 441 0 0 0 chr6 84428824 84428872 -65088165 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 1229 673 289 65 25 chr6 84428915 84429192 -65087845 - B4A SINE B4 -4 288 1 7 1229 271 256 99 63 chr6 84429487 84429629 -65087408 - MIRc SINE MIR -68 200 54 7 1229 302 232 58 0 chr6 84429826 84429895 -65087142 - MIR3 SINE MIR -31 177 105 7 1229 202 204 37 0 chr6 84430438 84430492 -65086545 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 7 1229 212 147 0 0 chr6 84430797 84430831 -65086206 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1229 289 303 0 0 chr6 84430839 84430905 -65086132 - ID4_ SINE ID -16 67 2 7 1229 553 271 125 133 chr6 84432322 84432713 -65084324 + MLT1A1 LTR MaLR 21 408 0 7 1229 1344 277 99 23 chr6 84432868 84433304 -65083733 + RCHARR1 DNA MER1_type 1 469 -505 7 1229 230 200 50 183 chr6 84433366 84433444 -65083593 + RCHARR1 DNA MER1_type 800 871 -103 7 1229 507 312 258 9 chr6 84433444 84433677 -65083360 - B4A SINE B4 -1 291 1 7 1229 230 200 50 183 chr6 84433677 84433697 -65083340 + RCHARR1 DNA MER1_type 872 885 -89 7 1229 767 271 64 0 chr6 84433697 84433900 -65083137 - B3 SINE B2 0 216 1 7 1229 230 200 50 183 chr6 84433900 84434002 -65083035 + RCHARR1 DNA MER1_type 886 974 0 7 1229 251 226 159 16 chr6 84434515 84434578 -65082459 + ID4 SINE ID 1 72 -11 7 1229 318 115 0 0 chr6 84434662 84434723 -65082314 + (A)n Simple_repeat Simple_repeat 1 61 0 7 1229 206 242 149 15 chr6 84434870 84434937 -65082100 - MIR SINE MIR -77 185 110 7 1229 951 269 59 18 chr6 84437085 84437358 -65079679 + B4 SINE B4 5 288 -4 7 1229 424 240 123 8 chr6 84437403 84437533 -65079504 + B1_Mur2 SINE Alu 1 145 -4 7 1229 998 157 6 23 chr6 84438047 84438223 -65078814 + URR1B DNA MER1_type 53 225 0 7 1229 386 303 45 55 chr6 84438223 84438246 -65078791 - CYRA11_Mm Unknown Y-chromosome -274 343 147 7 1229 206 278 0 18 chr6 84438588 84438643 -65078394 + G-rich Low_complexity Low_complexity 5 58 0 7 1229 192 338 55 0 chr6 84439431 84439531 -65077506 + MIR SINE MIR 81 190 -78 7 1229 576 0 0 0 chr6 84440166 84440230 -65076807 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1229 1065 264 52 35 chr6 84440651 84440938 -65076099 + B4A SINE B4 1 292 0 7 1229 306 182 0 18 chr6 84440944 84441000 -65076037 + HAL1-3A_ME LINE L1 1975 2029 -829 7 1229 299 113 0 19 chr6 84441161 84441215 -65075822 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1229 325 215 22 34 chr6 84442458 84442636 -65074401 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 8 1229 635 312 4 102 chr6 84443299 84443574 -65073463 - MIR SINE MIR 0 262 15 8 1229 861 338 73 5 chr6 84444062 84444431 -65072606 + MER82 DNA MER2_type 2 395 -258 8 1229 962 280 4 9 chr6 84444432 84444659 -65072378 + B4A SINE B4 1 226 -66 8 1229 423 0 0 0 chr6 84444660 84444707 -65072330 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1229 389 256 62 34 chr6 84445083 84445261 -65071776 - LTR16B2 LTR ERVL -5 457 275 8 1229 297 195 114 25 chr6 84445936 84446015 -65071022 + RMER15 LTR ERVL 336 421 -154 8 1229 824 238 24 0 chr6 84446939 84447103 -65069934 + ID_B1 SINE B4 47 214 -10 8 1229 611 340 40 61 chr6 84447296 84447672 -65069365 + MER58D DNA MER1_type 19 386 0 8 1229 407 238 81 127 chr6 84447692 84447889 -65069148 - RMER30 DNA MER1_type -4 198 11 8 1229 204 40 0 0 chr6 84448304 84448329 -65068708 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 8 1229 1144 70 7 0 chr6 84448450 84448593 -65068444 + B1_Mus2 SINE Alu 2 145 -2 8 1229 304 324 117 7 chr6 84448715 84448736 -65068301 + B4 SINE B4 72 221 -69 8 1229 515 202 193 0 chr6 84448736 84448850 -65068187 + B1F SINE Alu 9 144 -5 8 1229 313 321 45 27 chr6 84449196 84449308 -65067729 + L1M5 LINE L1 5725 5838 -286 8 1229 218 200 0 22 chr6 84449376 84449422 -65067615 - PB1D10 SINE Alu -39 78 34 8 1229 328 223 128 23 chr6 84449837 84449970 -65067067 + L1M3 LINE L1 5689 5835 -354 8 1229 442 311 36 49 chr6 84450070 84450317 -65066720 + L1MA6 LINE L1 6057 6300 0 8 1229 303 71 0 0 chr6 84451464 84451506 -65065531 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1229 184 394 109 0 chr6 84451618 84451793 -65065244 - L2 LINE L2 -481 2938 2745 8 1229 334 322 127 30 chr6 84452017 84452254 -65064783 + Charlie4 DNA MER1_type 11 270 -1691 8 1229 568 246 35 0 chr6 84452763 84452877 -65064160 + PB1D7 SINE Alu 1 118 -2 8 1229 382 248 0 142 chr6 84452765 84452906 -65064131 + MT2B2 LTR ERVL 167 287 -297 8 1229 258 224 138 23 chr6 84452875 84452962 -65064075 + ID_B1 SINE B4 81 177 -47 8 1229 477 0 0 0 chr6 84452962 84453015 -65064022 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1229 270 0 0 0 chr6 84453015 84453044 -65063993 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1229 219 415 9 0 chr6 84454277 84454383 -65062654 + MIRc SINE MIR 46 152 -116 8 1229 228 292 212 76 chr6 84455167 84455705 -65061332 + L2 LINE L2 2456 3066 -353 8 1229 468 326 16 0 chr6 84455714 84455843 -65061194 + ORR1E LTR MaLR 2 132 -227 8 1229 367 261 81 40 chr6 84455872 84456020 -65061017 + ORR1E LTR MaLR 226 379 0 8 1229 531 0 0 0 chr6 84456049 84456108 -65060929 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1229 240 193 24 24 chr6 84456292 84456377 -65060660 + GA-rich Low_complexity Low_complexity 3 87 0 8 1229 389 301 84 30 chr6 84456377 84456625 -65060412 + HAL1-3A_ME LINE L1 2284 2439 -419 8 1229 213 205 0 0 chr6 84456631 84456670 -65060367 + GA-rich Low_complexity Low_complexity 1 39 0 8 1229 208 302 172 30 chr6 84456707 84456806 -65060231 + MIRb SINE MIR 74 186 -82 8 1229 626 215 30 8 chr6 84457226 84457357 -65059680 + RSINE1 SINE B4 3 136 -29 8 1229 381 43 0 0 chr6 84457358 84457405 -65059632 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1229 189 309 61 12 chr6 84457473 84457555 -65059482 - MIR SINE MIR -72 136 51 8 1229 435 106 0 0 chr6 84458220 84458286 -65058751 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 1229 342 303 140 13 chr6 84458702 84458859 -65058178 - MIRc SINE MIR -62 206 30 8 1229 709 250 0 33 chr6 84458974 84459127 -65057910 + B1_Mur1 SINE Alu 2 149 0 8 1229 682 258 91 0 chr6 84460110 84460308 -65056729 - ID_B1 SINE B4 -7 217 2 8 1229 452 86 0 14 chr6 84460624 84460695 -65056342 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 1229 430 210 39 39 chr6 84460706 84460810 -65056227 - RSINE1 SINE B4 -60 105 2 8 1229 280 250 107 0 chr6 84461306 84461390 -65055647 - MER20B DNA MER1_type -12 771 679 8 1229 237 150 0 24 chr6 84461407 84461448 -65055589 + B2_Mm2 SINE B2 3 42 -153 8 1229 538 228 46 23 chr6 84461435 84461565 -65055472 + B3 SINE B2 82 214 -2 8 1229 265 312 0 0 chr6 84461890 84461967 -65055070 - MER20B DNA MER1_type -507 276 200 8 1229 356 239 42 0 chr6 84462368 84462439 -65054598 - ID4_ SINE ID -4 79 6 8 1229 677 247 137 0 chr6 84463593 84463783 -65053254 + ID_B1 SINE B4 2 217 -7 8 1229 310 298 259 38 chr6 84464259 84464552 -65052485 + HAL1-3A_ME LINE L1 2081 2438 -420 8 1229 185 226 32 0 chr6 84464568 84464630 -65052407 + GA-rich Low_complexity Low_complexity 2 65 0 8 1229 240 210 0 151 chr6 84465300 84465373 -65051664 + PB1D10 SINE Alu 56 117 0 8 1229 3161 196 55 15 chr6 84466459 84467132 -65049905 + Lx5 LINE L1 6306 7005 -45 8 1229 189 0 0 0 chr6 84467155 84467176 -65049861 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 1229 870 149 8 0 chr6 84467189 84467323 -65049714 + B1_Mur4 SINE Alu 3 137 -13 8 1229 324 0 0 0 chr6 84467326 84467362 -65049675 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 8 1229 192 40 0 0 chr6 84467368 84467393 -65049644 + (CAAAAA)n Simple_repeat Simple_repeat 1 25 0 8 1229 350 163 36 117 chr6 84467774 84467885 -65049152 + Lx8 LINE L1 7090 7191 -282 8 1229 299 296 0 47 chr6 84468059 84468144 -65048893 - ID4 SINE ID -2 81 1 8 1229 1235 232 50 18 chr6 84468170 84468447 -65048590 + B4A SINE B4 1 286 -6 8 1229 513 0 0 0 chr6 84468450 84468507 -65048530 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1229 260 326 61 82 chr6 84468513 84468528 -65048509 + B4A SINE B4 81 224 -68 8 1229 586 214 81 15 chr6 84468528 84468660 -65048377 + B1_Mur1 SINE Alu 1 148 -1 8 1229 26 0 0 0 chr6 84468660 84468686 -65048351 + AT_rich Low_complexity Low_complexity 1 26 0 8 1229 236 232 168 20 chr6 84469621 84469722 -65047315 - MER76 LTR ERVL -299 392 277 8 1229 389 261 70 84 chr6 84470107 84470249 -65046788 - B1F1 SINE Alu -9 140 1 8 1229 682 268 46 95 chr6 84470339 84470719 -65046318 - L1MB3 LINE L1 -105 6079 5722 8 1229 402 194 262 0 chr6 84470757 84470860 -65046177 - B1_Mur2 SINE Alu -12 137 8 8 1229 264 213 216 69 chr6 84470860 84470873 -65046164 - ID_B1 SINE B4 -12 212 80 8 1229 520 274 112 22 chr6 84471137 84471316 -65045721 + B3A SINE B2 1 195 -3 8 1229 455 263 102 73 chr6 84471380 84471585 -65045452 + MLT1D LTR MaLR 1 211 -294 8 1229 469 288 78 22 chr6 84471726 84471957 -65045080 + RLTR42-int LTR ERVK 1156 1399 -4123 8 1229 563 62 12 0 chr6 84472268 84472348 -65044689 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 8 1229 333 247 14 0 chr6 84472682 84472755 -65044282 - PB1D10 SINE Alu -10 107 34 8 1229 306 341 134 18 chr6 84473054 84473278 -65043759 - L1M5 LINE L1 -478 5646 5397 8 1229 581 255 36 7 chr6 84473469 84473607 -65043430 - RSINE1 SINE B4 -22 143 2 8 1229 288 296 118 20 chr6 84473747 84474004 -65043033 - MLT1G LTR MaLR -35 560 196 8 1229 414 309 18 9 chr6 84474320 84474431 -65042606 - PB1 SINE Alu 0 127 16 8 1229 1019 97 6 22 chr6 84474463 84474642 -65042395 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 8 1229 378 0 0 0 chr6 84474644 84474686 -65042351 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 8 1229 244 292 169 0 chr6 84474720 84474785 -65042252 - ID4_ SINE ID -6 77 2 8 1229 201 74 0 0 chr6 84474882 84474909 -65042128 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 8 1229 412 188 14 19 chr6 84475006 84475109 -65041928 + B3 SINE B2 1 102 -91 8 1229 454 245 67 89 chr6 84475082 84475261 -65041776 + MLT1D LTR MaLR 23 197 -308 8 1229 499 323 88 31 chr6 84475299 84475683 -65041354 - L1M2 LINE L1 -455 5724 5319 8 1229 315 323 128 15 chr6 84475738 84475942 -65041095 - L1M2 LINE L1 -934 5212 4986 8 1229 392 232 106 9 chr6 84475961 84475986 -65041051 - PB1 SINE Alu -3 124 2 8 1229 642 58 0 0 chr6 84475986 84476073 -65040964 - 4.5SRNA scRNA scRNA -7 87 1 8 1229 509 280 36 4 chr6 84476764 84476985 -65040052 - L1M2 LINE L1 -1095 5045 4825 8 1229 445 343 21 28 chr6 84477051 84477192 -65039845 - RSINE1 SINE B4 -22 143 4 8 1229 303 254 0 0 chr6 84477216 84477279 -65039758 - L1M2 LINE L1 -1331 4812 4750 8 1229 744 197 15 0 chr6 84477684 84477821 -65039216 - B1_Mus2 SINE Alu -8 139 1 8 1229 249 410 36 42 chr6 84477838 84478006 -65039031 - B3A SINE B2 -30 168 2 8 1229 468 295 203 21 chr6 84478006 84478462 -65038575 - L1M5 LINE L1 -2726 3420 3085 8 1229 303 140 0 0 chr6 84478946 84478996 -65038041 + (CAT)n Simple_repeat Simple_repeat 2 51 0 8 1229 247 224 135 45 chr6 84479038 84479127 -65037910 + B4A SINE B4 1 97 -195 8 1229 318 211 99 0 chr6 84479363 84479434 -65037603 + RSINE1 SINE B4 57 134 -31 8 1229 387 0 0 0 chr6 84479478 84479521 -65037516 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1229 569 208 92 0 chr6 84479955 84480085 -65036952 - B3A SINE B2 -56 142 1 8 1229 434 274 170 0 chr6 84480180 84480315 -65036722 + MTE2b LTR MaLR 3 160 -219 8 1229 3418 135 89 37 chr6 84480833 84481404 -65035633 + MT2B LTR ERVL 1 601 0 8 1229 1229 276 51 53 chr6 84481563 84481976 -65035061 - MTD LTR MaLR 0 419 8 8 1229 278 225 34 91 chr6 84482240 84482328 -65034709 + MLT1H1 LTR MaLR 7 89 -466 8 1229 593 298 81 73 chr6 84482354 84482665 -65034372 + MLT1H1 LTR MaLR 237 522 -33 8 1229 2495 160 35 0 chr6 84482943 84483342 -65033695 - MTC LTR MaLR -8 413 1 9 1229 1251 252 81 3 chr6 84483342 84483637 -65033400 - MTE2b LTR MaLR -14 365 48 9 1229 252 269 254 18 chr6 84483556 84483666 -65033371 - MT2A LTR ERVL -396 137 2 9 1229 237 228 53 115 chr6 84484065 84484273 -65032764 + RMER17C LTR ERVK 39 233 -177 9 1229 1033 288 89 9 chr6 84486016 84486363 -65030674 + MTEa LTR MaLR 1 375 -4 9 1229 4533 25 50 30 chr6 84486648 84487224 -65029813 - L1Md_F2 LINE L1 0 6582 5995 9 1229 524 280 19 45 chr6 84488984 84489141 -65027896 - RSINE1 SINE B4 -2 163 11 9 1229 351 44 0 0 chr6 84489155 84489200 -65027837 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1229 870 268 81 19 chr6 84489215 84489474 -65027563 - B4A SINE B4 -16 276 2 9 1229 180 111 0 0 chr6 84490163 84490190 -65026847 + (TCC)n Simple_repeat Simple_repeat 1 27 0 9 1229 1386 213 182 74 chr6 84490804 84491305 -65025732 + RMER4B LTR ERVK 17 571 -14 9 1229 280 356 128 25 chr6 84491670 84491912 -65025125 - L3 LINE CR1 -776 3713 3447 9 1229 360 0 0 0 chr6 84493012 84493052 -65023985 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1229 26 0 0 0 chr6 84493171 84493197 -65023840 + AT_rich Low_complexity Low_complexity 1 26 0 9 1229 723 281 99 37 chr6 84493219 84493492 -65023545 - B4 SINE B4 0 292 3 9 1229 486 120 0 0 chr6 84494159 84494234 -65022803 + (TC)n Simple_repeat Simple_repeat 1 75 0 9 1229 555 291 94 6 chr6 84495798 84495978 -65021059 - MER20 DNA MER1_type -7 212 17 9 1229 824 276 88 29 chr6 84496494 84496767 -65020270 + B4A SINE B4 2 290 -2 9 1229 22 0 0 0 chr6 84496930 84496952 -65020085 + AT_rich Low_complexity Low_complexity 1 22 0 9 1229 573 282 51 18 chr6 84497274 84497491 -65019546 - HAL1b LINE L1 -676 1333 1110 9 1229 1001 276 91 12 chr6 84497575 84497982 -65019055 - Lx9 LINE L1 0 7644 7206 9 1229 1421 237 68 18 chr6 84497991 84498386 -65018651 - Lx9 LINE L1 -675 6969 6555 9 1229 1414 218 32 11 chr6 84498666 84498949 -65018088 - B4 SINE B4 0 292 4 9 1229 275 236 14 35 chr6 84499142 84499225 -65017812 + CT-rich Low_complexity Low_complexity 1 81 0 9 1229 520 228 123 2 chr6 84499226 84499373 -65017664 - ID_B1 SINE B4 -48 244 80 9 1229 235 258 104 52 chr6 84499257 84499392 -65017645 - MT2B LTR ERVL -313 288 147 9 1229 653 223 0 0 chr6 84499664 84499785 -65017252 + RSINE1 SINE B4 2 122 -43 9 1229 360 0 0 0 chr6 84499785 84499825 -65017212 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1229 338 295 172 40 chr6 84500079 84500277 -65016760 - L1ME1 LINE L1 -7 6172 5949 1 1229 304 317 123 81 chr6 84500507 84500744 -65016293 - L1ME1 LINE L1 -595 5584 5314 1 1229 682 281 25 45 chr6 84500744 84500945 -65016092 - B3A SINE B2 -1 197 1 2 1229 304 317 123 81 chr6 84500945 84500990 -65016047 - L1ME1 LINE L1 -866 5313 5288 1 1229 2095 123 44 47 chr6 84500990 84501399 -65015638 + RMER17C LTR ERVK 1 408 -2 3 1229 304 317 123 81 chr6 84501399 84501424 -65015613 - L1ME1 LINE L1 -892 5287 5263 1 1229 434 252 130 0 chr6 84501424 84501539 -65015498 + B4 SINE B4 136 265 -27 4 1229 182 246 16 0 chr6 84501539 84501600 -65015437 + C-rich Low_complexity Low_complexity 1 62 0 5 1229 300 273 42 68 chr6 84501732 84501747 -65015290 - B3A SINE B2 -83 115 1 6 1229 534 223 19 0 chr6 84501747 84501850 -65015187 - RSINE1 SINE B4 -59 106 2 7 1229 727 265 58 65 chr6 84502225 84502503 -65014534 - B4A SINE B4 -15 277 2 8 1229 306 356 50 35 chr6 84502712 84502910 -65014127 - L1MD LINE L1 -1865 4281 4081 9 1229 814 97 7 7 chr6 84503158 84503303 -65013734 + (TG)n Simple_repeat Simple_repeat 1 145 0 1 1229 693 276 36 42 chr6 84503314 84503507 -65013530 - B4A SINE B4 0 292 101 1 1229 443 266 49 37 chr6 84503630 84503794 -65013243 + B4A SINE B4 117 282 -10 1 1229 871 180 0 6 chr6 84503824 84504157 -65012880 + (CA)n Simple_repeat Simple_repeat 1 330 0 1 1229 601 199 0 13 chr6 84505290 84505443 -65011594 + (TG)n Simple_repeat Simple_repeat 1 151 0 1 1229 284 143 18 0 chr6 84505598 84505654 -65011383 + C-rich Low_complexity Low_complexity 5 61 0 1 1229 998 270 48 64 chr6 84505656 84506032 -65011005 + MTEa LTR MaLR 1 370 -9 1 1229 273 298 19 37 chr6 84507667 84507775 -65009262 - L1MC1 LINE L1 -5 6328 6223 1 1229 1039 251 265 2 chr6 84507832 84508305 -65008732 + Lx7 LINE L1 7069 7666 -30 1 1229 402 183 409 0 chr6 84508393 84508508 -65008529 + RSINE1 SINE B4 2 163 -2 1 1229 1786 95 106 81 chr6 84508656 84508912 -65008125 + ORR1A4 LTR MaLR 1 287 -42 2 1229 1167 75 0 7 chr6 84508912 84509060 -65007977 + B1_Mus2 SINE Alu 1 147 0 2 1229 1786 95 106 81 chr6 84509060 84509124 -65007913 + ORR1A4 LTR MaLR 288 329 0 2 1229 229 291 43 50 chr6 84509621 84509762 -65007275 - L2a LINE L2 -259 3167 3028 2 1229 785 249 73 19 chr6 84510080 84510285 -65006752 - B3 SINE B2 0 216 1 2 1229 637 167 0 9 chr6 84510370 84510479 -65006558 - B1_Mur2 SINE Alu 0 149 42 2 1229 474 322 0 0 chr6 84510493 84510667 -65006370 + C-rich Low_complexity Low_complexity 4 177 0 2 1229 240 246 49 0 chr6 84510700 84510761 -65006276 - B1F SINE Alu 0 149 86 2 1229 264 328 118 32 chr6 84511183 84511463 -65005574 - L1M6 LINE L1 -4488 2008 1705 2 1229 188 122 0 24 chr6 84511721 84511763 -65005274 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 2 1229 774 173 21 7 chr6 84511789 84511929 -65005108 + B1_Mur1 SINE Alu 1 142 -7 2 1229 22 0 0 0 chr6 84511966 84511988 -65005049 + AT_rich Low_complexity Low_complexity 1 22 0 3 1229 545 237 164 12 chr6 84511991 84512162 -65004875 - B3A SINE B2 -1 197 1 3 1229 359 202 0 11 chr6 84512320 84512410 -65004627 + CT-rich Low_complexity Low_complexity 5 93 0 3 1229 207 250 0 15 chr6 84512739 84512804 -65004233 + G-rich Low_complexity Low_complexity 4 67 0 3 1229 400 323 35 44 chr6 84513067 84513294 -65003743 + MLT1F LTR MaLR 292 516 -32 3 1229 228 260 14 14 chr6 84515130 84515204 -65001833 + RLTR31A_Mm LTR ERVK 77 150 -434 3 1229 489 237 36 29 chr6 84516976 84517115 -64999922 + B4 SINE B4 108 247 -45 3 1229 610 270 26 13 chr6 84517102 84517256 -64999781 + B3A SINE B2 5 160 -38 3 1229 405 0 0 0 chr6 84517261 84517306 -64999731 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1229 638 225 49 0 chr6 84517325 84517467 -64999570 + B1_Mur1 SINE Alu 1 149 0 3 1229 206 294 0 0 chr6 84517506 84517557 -64999480 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1229 396 167 0 0 chr6 84518058 84518130 -64998907 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1229 530 246 37 44 chr6 84518392 84518528 -64998509 + RSINE1 SINE B4 2 136 -29 4 1229 21 36 0 0 chr6 84518531 84518559 -64998478 + AT_rich Low_complexity Low_complexity 1 28 0 4 1229 238 259 0 0 chr6 84518948 84519002 -64998035 + GA-rich Low_complexity Low_complexity 4 57 0 4 1229 354 300 8 24 chr6 84519740 84519863 -64997174 + CT-rich Low_complexity Low_complexity 1 121 0 4 1229 255 291 0 0 chr6 84525603 84525720 -64991317 + (TG)n Simple_repeat Simple_repeat 2 118 0 4 1229 270 0 0 0 chr6 84526880 84526910 -64990127 + (CACG)n Simple_repeat Simple_repeat 1 30 0 4 1229 270 307 81 3 chr6 84528710 84528845 -64988192 + MIR SINE MIR 17 167 -101 4 1229 22 0 0 0 chr6 84533461 84533483 -64983554 + GC_rich Low_complexity Low_complexity 1 22 0 4 1229 241 308 107 59 chr6 84534007 84534176 -64982861 - MER115 DNA Tip100 -324 369 193 5 1229 342 0 0 0 chr6 84534580 84534618 -64982419 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1229 224 173 0 37 chr6 84536412 84536466 -64980571 + A-rich Low_complexity Low_complexity 2 53 0 5 1229 297 0 0 0 chr6 84536651 84536684 -64980353 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1229 321 89 0 0 chr6 84537232 84537277 -64979760 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1229 189 0 0 0 chr6 84538228 84538249 -64978788 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 1229 277 276 12 50 chr6 84538593 84538753 -64978284 + G-rich Low_complexity Low_complexity 1 154 0 5 1229 188 163 0 23 chr6 84538860 84538904 -64978133 + GA-rich Low_complexity Low_complexity 1 43 0 5 1229 31 44 0 0 chr6 84539103 84539148 -64977889 + GC_rich Low_complexity Low_complexity 1 45 0 5 1229 249 33 0 0 chr6 84539298 84539328 -64977709 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1229 270 0 0 0 chr6 84539720 84539750 -64977287 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1229 234 0 0 0 chr6 84541134 84541160 -64975877 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1230 288 0 0 0 chr6 84544116 84544148 -64972889 + (TC)n Simple_repeat Simple_repeat 2 33 0 6 1230 423 0 0 0 chr6 84544148 84544194 -64972843 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1230 578 183 3 0 chr6 84545115 84545408 -64971629 + CT-rich Low_complexity Low_complexity 1 294 0 6 1230 456 77 0 0 chr6 84546589 84546654 -64970383 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1230 559 88 0 21 chr6 84546680 84546773 -64970264 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 1230 648 98 37 15 chr6 84547486 84547620 -64969417 + (TATG)n Simple_repeat Simple_repeat 2 138 0 6 1230 640 307 20 15 chr6 84547800 84547995 -64969042 - ID_B1 SINE B4 0 224 29 6 1230 340 357 12 38 chr6 84548044 84548204 -64968833 + Arthur1A DNA Tip100 11 166 -11 6 1230 2305 169 2 5 chr6 84549467 84549866 -64967171 + Lx LINE L1 6255 6652 -2 7 1230 1615 68 14 9 chr6 84550826 84551049 -64965988 + L1_Mus2 LINE L1 6343 6566 0 7 1230 407 231 28 28 chr6 84551049 84551156 -64965881 - B4 SINE B4 -184 108 2 7 1230 365 267 0 11 chr6 84551319 84551410 -64965627 - PB1D10 SINE Alu -22 95 6 7 1230 32 0 0 0 chr6 84551903 84551935 -64965102 + AT_rich Low_complexity Low_complexity 1 32 0 7 1230 933 42 14 40 chr6 84552022 84552170 -64964867 - L1_Mus3 LINE L1 -1 6637 6494 7 1230 1004 139 0 6 chr6 84552186 84552359 -64964678 + (TTTTC)n Simple_repeat Simple_repeat 3 174 0 7 1230 267 31 0 0 chr6 84552360 84552392 -64964645 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 7 1230 1161 37 0 0 chr6 84552392 84552528 -64964509 - B1_Mus1 SINE Alu -12 136 1 7 1230 644 204 45 0 chr6 84552629 84552761 -64964276 + B1_Mur1 SINE Alu 7 144 -5 7 1230 282 56 0 0 chr6 84552761 84552797 -64964240 + (GGA)n Simple_repeat Simple_repeat 2 37 0 8 1230 21 0 0 0 chr6 84552815 84552836 -64964201 + AT_rich Low_complexity Low_complexity 1 21 0 8 1230 247 287 53 15 chr6 84552968 84553099 -64963938 + L1M5 LINE L1 3892 4027 -2119 8 1230 28 0 0 0 chr6 84553314 84553342 -64963695 + AT_rich Low_complexity Low_complexity 1 28 0 8 1230 1316 111 16 21 chr6 84553342 84553536 -64963501 - B2_Mm1t SINE B2 0 193 1 8 1230 952 118 64 5 chr6 84553882 84554129 -64962908 + Lx7 LINE L1 1169 1431 -4449 8 1230 1259 148 8 16 chr6 84554138 84554392 -64962645 + Lx7 LINE L1 2046 2297 -3583 8 1230 4115 107 10 25 chr6 84554394 84555005 -64962032 + Lx3C LINE L1 6366 6967 -9 8 1230 9872 133 32 66 chr6 84555031 84555474 -64961563 + Lx7 LINE L1 3376 3757 -2123 8 1230 384 22 0 0 chr6 84555479 84555524 -64961513 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1230 1202 98 31 57 chr6 84555524 84555712 -64961325 + B2_Mm2 SINE B2 6 189 -6 8 1230 12582 154 32 27 chr6 84555712 84559212 -64957825 + Lx7 LINE L1 3758 7254 -442 8 1230 8623 31 3 0 chr6 84559229 84560398 -64956639 - L1Md_F2 LINE L1 -4 6578 5406 8 1230 338 188 176 0 chr6 84560826 84560911 -64956126 + Lx7 LINE L1 7266 7365 -331 8 1230 1116 169 69 157 chr6 84560933 84561203 -64955834 + Lx7 LINE L1 7326 7558 -138 9 1230 859 152 251 0 chr6 84561203 84561374 -64955663 - B3 SINE B2 -1 215 2 9 1230 1116 169 69 157 chr6 84561374 84561510 -64955527 + Lx7 LINE L1 7559 7696 0 9 1230 276 281 156 8 chr6 84562334 84562456 -64954581 - MER46C DNA MER2_type -189 149 10 9 1230 365 297 90 0 chr6 84562608 84562719 -64954318 + B1F2 SINE Alu 15 135 -14 9 1230 321 133 26 13 chr6 84562719 84562795 -64954242 + GA-rich Low_complexity Low_complexity 2 78 0 9 1230 1458 186 84 0 chr6 84563324 84563620 -64953417 + ORR1A4 LTR MaLR 1 321 -8 9 1230 550 212 121 0 chr6 84565315 84565447 -64951590 + B1_Mur1 SINE Alu 2 149 0 9 1230 756 253 67 0 chr6 84567662 84567840 -64949197 + RMER1A Other Other 184 373 -657 9 1230 623 133 0 17 chr6 84567847 84567962 -64949075 + RMER1A Other Other 916 1028 -2 9 1230 192 40 0 0 chr6 84569021 84569046 -64947991 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 1230 182 337 12 35 chr6 84575531 84575617 -64941420 - L2a LINE L2 0 3426 3343 1 1230 412 314 83 13 chr6 84575747 84575976 -64941061 - L1MC4a LINE L1 -378 7664 7420 1 1230 363 230 224 26 chr6 84576090 84576206 -64940831 - RSINE1 SINE B4 -25 140 2 1 1230 1901 292 148 50 chr6 84576271 84577599 -64939438 - L1MC4a LINE L1 -513 7369 5913 1 1230 800 208 114 81 chr6 84578779 84579077 -64937960 + MTEa LTR MaLR 1 308 -71 1 1230 186 43 0 0 chr6 84579234 84579257 -64937780 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1230 304 312 82 31 chr6 84580975 84581134 -64935903 + MER58A DNA MER1_type 40 206 -18 1 1230 405 0 0 0 chr6 84581168 84581213 -64935824 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1230 423 343 60 54 chr6 84582246 84582597 -64934440 + Charlie7 DNA MER1_type 339 691 -1921 1 1230 454 303 0 27 chr6 84582866 84582886 -64934151 + ID_B1 SINE B4 79 223 -1 1 1230 564 234 31 8 chr6 84582886 84583015 -64934022 + B1F SINE Alu 18 149 0 1 1230 41 36 0 0 chr6 84583535 84583590 -64933447 + AT_rich Low_complexity Low_complexity 1 55 0 1 1230 402 161 12 24 chr6 84584007 84584090 -64932947 + B4 SINE B4 2 83 -209 1 1230 260 268 14 0 chr6 84584155 84584226 -64932811 + RSINE1 SINE B4 79 150 -15 1 1230 1294 174 80 4 chr6 84584226 84584502 -64932535 - ORR1D1 LTR MaLR 0 374 78 1 1230 228 283 197 0 chr6 84584834 84584986 -64932051 - MIRc SINE MIR -53 215 34 1 1230 477 0 0 0 chr6 84586486 84586539 -64930498 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1 1230 267 240 155 29 chr6 84586627 84586730 -64930307 + PB1D10 SINE Alu 2 117 0 1 1230 333 0 0 0 chr6 84586909 84586946 -64930091 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1230 1324 138 4 25 chr6 84587926 84588163 -64928874 + Lx LINE L1 6422 6653 -1 1 1230 2360 159 56 2 chr6 84589522 84589918 -64927119 + MTC LTR MaLR 1 417 -4 1 1230 278 50 25 0 chr6 84592142 84592182 -64924855 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1230 3910 49 0 2 chr6 84592402 84592873 -64924164 + L1_Mus1 LINE L1 6098 6567 0 1 1230 407 253 118 20 chr6 84593222 84593375 -64923662 + B4A SINE B4 117 284 -8 1 1230 324 281 74 8 chr6 84593406 84593528 -64923509 + MIR SINE MIR 1 130 -132 1 1230 449 266 44 0 chr6 84594216 84594329 -64922708 - B1F1 SINE Alu -27 122 5 1 1230 883 193 236 4 chr6 84595054 84595304 -64921733 - MT2A LTR ERVL -74 459 152 1 1230 697 243 14 0 chr6 84595353 84595497 -64921540 - ID_B1 SINE B4 -53 171 26 1 1230 340 222 44 0 chr6 84598127 84598217 -64918820 - B1F1 SINE Alu -55 94 1 1 1230 339 345 130 17 chr6 84598275 84598547 -64918490 + MLT1G3 LTR MaLR 1 300 -279 1 1230 511 221 16 16 chr6 84598689 84598813 -64918224 + B1_Mur4 SINE Alu 10 133 -17 1 1230 336 127 0 0 chr6 84598822 84598877 -64918160 + (GGA)n Simple_repeat Simple_repeat 3 57 0 1 1230 246 171 113 14 chr6 84598899 84598970 -64918067 + MLT1G LTR MaLR 491 568 -23 1 1230 252 264 149 9 chr6 84599176 84599283 -64917754 + MLT1A0 LTR MaLR 23 144 -221 1 1230 332 301 49 0 chr6 84599317 84599440 -64917597 + MLT1A0 LTR MaLR 235 363 -2 1 1230 2258 159 22 99 chr6 84600848 84601351 -64915686 - RMER4A LTR ERVK 0 466 3 1 1230 277 270 27 0 chr6 84601528 84601602 -64915435 + RMER30 DNA MER1_type 15 90 -112 1 1230 354 228 43 21 chr6 84601670 84601764 -64915273 + RSINE1 SINE B4 8 103 -62 1 1230 259 222 0 0 chr6 84602315 84602369 -64914668 + L1MD LINE L1 4858 4911 -1235 1 1230 245 254 30 0 chr6 84603161 84603228 -64913809 + L1M3 LINE L1 5401 5469 -714 1 1230 294 29 0 0 chr6 84603230 84603265 -64913772 + (CAACC)n Simple_repeat Simple_repeat 3 37 0 1 1230 231 235 0 0 chr6 84603317 84603415 -64913622 + CT-rich Low_complexity Low_complexity 3 100 0 1 1230 725 277 64 0 chr6 84605619 84605807 -64911230 + B4A SINE B4 45 244 -48 1 1230 368 40 20 0 chr6 84605830 84605880 -64911157 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1230 585 40 0 0 chr6 84606642 84606718 -64910319 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1230 616 296 86 29 chr6 84608407 84608610 -64908427 + B4 SINE B4 3 217 -75 1 1230 279 300 25 0 chr6 84608610 84608690 -64908347 + ID4 SINE ID 2 83 0 1 1230 248 288 112 0 chr6 84608751 84608831 -64908206 + PB1D7 SINE Alu 3 91 -29 1 1230 400 274 32 0 chr6 84608763 84608858 -64908179 + ID_B1 SINE B4 102 199 -25 1 1230 11170 58 5 10 chr6 84608923 84610366 -64906671 - L1_Mm LINE L1 -1336 4547 3112 1 1230 2960 63 5 3 chr6 84610366 84610745 -64906292 + L1_Mus1 LINE L1 6188 6567 0 1 1230 461 276 129 69 chr6 84611237 84611563 -64905474 + L1MD3 LINE L1 7441 7986 -9 1 1230 273 307 143 59 chr6 84612417 84612690 -64904347 + L1M5 LINE L1 2220 2515 -3631 1 1230 496 62 0 30 chr6 84612695 84612761 -64904276 - L1Md_F2 LINE L1 -1336 4547 4484 1 1230 8857 53 0 0 chr6 84612760 84613830 -64903207 + L1Md_F2 LINE L1 4517 5586 -297 1 1230 9005 23 3 13 chr6 84613830 84614833 -64902204 + L1Md_F2 LINE L1 5587 6579 -3 1 1230 754 239 225 57 chr6 84614880 84615124 -64901913 + B4 SINE B4 2 286 -6 1 1230 342 0 0 0 chr6 84616441 84616479 -64900558 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1230 721 247 91 35 chr6 84617106 84617303 -64899734 + B3 SINE B2 1 208 -8 1 1230 1210 130 172 0 chr6 84617343 84617535 -64899502 - URR1B DNA MER1_type 0 225 1 1 1230 259 292 27 36 chr6 84617604 84617714 -64899323 + L1M5 LINE L1 5608 5716 -408 1 1230 7916 203 96 14 chr6 84620139 84621897 -64895140 + Lx7 LINE L1 5527 7392 -304 1 1230 944 231 100 4 chr6 84621907 84622137 -64894900 + ORR1D2 LTR MaLR 118 369 -1 1 1230 378 42 0 0 chr6 84622520 84622568 -64894469 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1 1230 374 290 140 0 chr6 84623997 84624096 -64892941 + B4 SINE B4 64 176 -116 1 1230 4450 149 37 167 chr6 84624096 84625185 -64891852 + RMER21A LTR ERV1 1 947 0 1 1230 504 169 0 0 chr6 84625185 84625255 -64891782 + RMER21B LTR ERV1 765 834 -8 1 1230 268 64 21 21 chr6 84625304 84625352 -64891685 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 1230 263 320 102 0 chr6 84625788 84625916 -64891121 + L2a LINE L2 3267 3407 -19 1 1230 342 0 0 0 chr6 84626171 84626209 -64890828 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1230 363 350 25 17 chr6 84626242 84626361 -64890676 - B4A SINE B4 -18 274 155 1 1230 1648 16 0 0 chr6 84626365 84626557 -64890480 - MT2_Mm LTR ERVL 0 493 302 1 1230 210 307 95 38 chr6 84626562 84626667 -64890370 - B4A SINE B4 -174 118 8 1 1230 688 250 70 33 chr6 84628501 84628780 -64888257 + MLT1C LTR MaLR 128 505 0 1 1230 577 348 85 21 chr6 84628792 84629132 -64887905 + MLT1C-int LTR MaLR 51 412 -959 1 1230 5131 64 7 7 chr6 84629132 84629790 -64887247 - L1_Mus1 LINE L1 -344 6223 5590 1 1230 2944 65 3 0 chr6 84629792 84630146 -64886891 + L1_Mus1 LINE L1 6212 6566 -1 1 1230 1244 292 62 143 chr6 84630186 84631102 -64885935 + MLT1C-int LTR MaLR 401 1242 -129 1 1230 268 364 15 15 chr6 84631151 84631285 -64885752 + MLT1C-int LTR MaLR 1237 1370 -1 1 1230 376 127 0 0 chr6 84631501 84631556 -64885481 - ORR1C2 LTR MaLR 0 384 330 1 1230 252 0 0 0 chr6 84631556 84631584 -64885453 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1230 38879 30 0 0 chr6 84631593 84638218 -64878819 - L1Md_T LINE L1 0 6585 1 1 1230 510 220 9 0 chr6 84639705 84639814 -64877223 - ID_B1 SINE B4 0 224 115 1 1230 575 306 109 54 chr6 84639973 84640608 -64876429 - L1ME2z LINE L1 -231 6213 5514 1 1230 196 368 168 5 chr6 84641895 84642097 -64874940 - L3 LINE CR1 -6 4483 4249 1 1230 335 241 205 0 chr6 84642572 84642684 -64874353 + ID_B1 SINE B4 90 224 0 1 1230 3857 74 4 4 chr6 84644485 84644974 -64872063 + L1_Mus3 LINE L1 6150 6638 0 1 1230 421 311 93 21 chr6 84645748 84645942 -64871095 + MIRb SINE MIR 51 258 -10 1 1230 208 175 0 31 chr6 84646461 84646526 -64870511 + CT-rich Low_complexity Low_complexity 3 65 0 1 1230 212 276 9 0 chr6 84647163 84647268 -64869769 + GA-rich Low_complexity Low_complexity 1 106 0 1 1230 241 298 38 83 chr6 84648853 84648985 -64868052 - L2c LINE L2 -4 3383 3258 1 1230 210 71 0 0 chr6 84649100 84649128 -64867909 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1230 795 288 40 28 chr6 84649545 84649792 -64867245 + MTEb LTR MaLR 51 300 -79 1 1230 414 0 0 0 chr6 84650096 84650142 -64866895 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1230 411 21 0 0 chr6 84650142 84650189 -64866848 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1230 395 167 0 9 chr6 84650189 84650304 -64866733 + GA-rich Low_complexity Low_complexity 1 114 0 1 1230 360 0 0 0 chr6 84650329 84650369 -64866668 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1230 246 242 161 0 chr6 84650456 84650518 -64866519 - ID4_ SINE ID -11 72 1 1 1230 430 294 58 68 chr6 84652327 84652517 -64864520 + B3A SINE B2 2 189 -6 1 1230 22 0 0 0 chr6 84652527 84652549 -64864488 + AT_rich Low_complexity Low_complexity 1 22 0 1 1230 304 278 62 36 chr6 84652550 84652662 -64864375 - PB1D10 SINE Alu -1 116 2 1 1230 319 294 92 0 chr6 84653496 84653605 -64863432 + ORR1E LTR MaLR 2 120 -239 1 1230 374 282 0 0 chr6 84654818 84654921 -64862116 + L1MC1 LINE L1 988 1090 -5152 1 1230 261 247 27 27 chr6 84655206 84655281 -64861756 + HAL1 LINE L1 1521 1595 -912 1 1230 1495 231 91 9 chr6 84655281 84655631 -64861406 + MTEa LTR MaLR 1 379 0 1 1230 1254 260 53 9 chr6 84655821 84656420 -64860617 + L1MC1 LINE L1 5031 5658 -675 1 1230 228 277 45 57 chr6 84656421 84656509 -64860528 + MT2B2 LTR ERVL 153 239 -345 1 1230 353 257 67 29 chr6 84656442 84656546 -64860491 + PB1D9 SINE Alu 12 119 -1 1 1230 1309 235 70 19 chr6 84656561 84656934 -64860103 + L1MC1 LINE L1 5661 6052 -281 1 1230 651 289 102 23 chr6 84656940 84657284 -64859753 + MLT2B4 LTR ERVL 2 372 -184 1 1230 21 36 0 0 chr6 84657877 84657905 -64859132 + AT_rich Low_complexity Low_complexity 1 28 0 1 1230 189 147 0 0 chr6 84657964 84657998 -64859039 + (TTA)n Simple_repeat Simple_repeat 3 36 0 2 1230 287 281 0 0 chr6 84658001 84658058 -64858979 - PB1D10 SINE Alu -11 106 50 2 1230 21 36 0 0 chr6 84658240 84658268 -64858769 + AT_rich Low_complexity Low_complexity 1 28 0 2 1230 1008 96 228 6 chr6 84659681 84659839 -64857198 - B2_Mm2 SINE B2 -1 194 2 2 1230 620 72 43 26 chr6 84660288 84660403 -64856634 + (TTTCC)n Simple_repeat Simple_repeat 4 120 0 2 1230 264 272 41 58 chr6 84660519 84660640 -64856397 + L1M6 LINE L1 927 1045 -5451 2 1230 210 239 0 0 chr6 84661409 84661455 -64855582 - PB1D10 SINE Alu -10 107 62 2 1230 613 181 0 2 chr6 84662006 84662113 -64854924 + B1_Mur2 SINE Alu 13 117 -32 2 1230 277 336 63 36 chr6 84662021 84662132 -64854905 + B4 SINE B4 111 224 -68 2 1230 251 305 90 22 chr6 84662263 84662397 -64854640 - MER58A DNA MER1_type -11 213 71 2 1230 2099 173 114 0 chr6 84662552 84662928 -64854109 - MTD LTR MaLR 0 419 1 2 1230 1200 223 142 27 chr6 84663099 84663431 -64853606 + ORR1D1 LTR MaLR 5 374 0 2 1230 29727 6 0 1 chr6 84663486 84669282 -64847755 + L1Md_A LINE L1 1 5586 -297 2 1230 9621 3 0 0 chr6 84669282 84670278 -64846759 + L1Md_A LINE L1 5587 6582 0 2 1230 2589 165 67 57 chr6 84670353 84670662 -64846375 - RMER4B LTR ERVK 0 585 273 2 1230 198 0 0 0 chr6 84670662 84670684 -64846353 + (CCAA)n Simple_repeat Simple_repeat 3 24 0 2 1230 2589 165 67 57 chr6 84670684 84670939 -64846098 - RMER4B LTR ERVK -313 272 15 2 1230 476 123 41 0 chr6 84670941 84671014 -64846023 - MurERV4-int LTR ERVK 0 5260 5185 2 153 6737 194 35 18 chr6 84671012 84672516 -64844521 - MurERV4-int LTR ERVK -3570 1690 38 2 1231 3256 157 25 14 chr6 84672554 84673118 -64843919 - RMER4B LTR ERVK -13 572 3 2 1231 290 204 67 19 chr6 84673419 84673524 -64843513 - Lx9 LINE L1 0 7644 7535 2 1231 279 0 0 0 chr6 84673575 84673606 -64843431 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1231 487 239 18 0 chr6 84673623 84673732 -64843305 - Lx9 LINE L1 -242 7402 7292 2 1231 1964 149 17 11 chr6 84673801 84674153 -64842884 - RLTR15 LTR ERVK -5 354 1 2 1231 698 254 83 19 chr6 84674186 84674374 -64842663 + B3 SINE B2 1 188 -7 2 1231 245 346 53 3 chr6 84674571 84674677 -64842360 - MIR SINE MIR -23 245 131 2 1231 1040 213 74 37 chr6 84675979 84676223 -64840814 - MTD LTR MaLR 0 419 167 2 1231 200 329 13 38 chr6 84678390 84678469 -64838568 - L2 LINE L2 -759 2660 2584 2 1231 223 364 146 5 chr6 84679255 84679454 -64837583 - L2c LINE L2 -51 3336 3110 2 1231 262 159 0 0 chr6 84680895 84680939 -64836098 - B1_Mur2 SINE Alu -1 148 105 2 1231 317 306 122 9 chr6 84681227 84681448 -64835589 + L1ME1 LINE L1 3912 4157 -1989 2 1231 262 270 91 14 chr6 84681678 84681823 -64835214 + L1M4 LINE L1 4502 4663 -1483 2 1231 339 25 0 0 chr6 84681832 84681872 -64835165 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1231 404 328 80 106 chr6 84681880 84682058 -64834979 + L1M4 LINE L1 4664 4862 -1284 2 1231 692 265 75 32 chr6 84682058 84682245 -64834792 - B3A SINE B2 -3 195 1 2 1231 404 328 80 106 chr6 84682245 84682615 -64834422 + L1M4 LINE L1 4863 5198 -948 2 1231 5100 180 63 16 chr6 84682616 84683597 -64833440 + Lx5 LINE L1 6024 7050 0 2 1231 338 314 88 0 chr6 84683759 84683861 -64833176 + RSINE1 SINE B4 12 122 -43 2 1231 528 77 0 0 chr6 84683864 84683942 -64833095 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1231 947 315 123 40 chr6 84683958 84684431 -64832606 + L1ME1 LINE L1 5459 5970 -374 2 1231 338 336 81 47 chr6 84684553 84684615 -64832422 + L1ME2 LINE L1 5663 5724 -440 2 1231 1054 248 194 0 chr6 84684615 84684925 -64832112 - ORR1D2 LTR MaLR 0 370 1 2 1231 338 336 81 47 chr6 84684925 84685096 -64831941 + L1ME2 LINE L1 5725 5904 -260 2 1231 2536 64 3 94 chr6 84687503 84687863 -64829174 + ORR1A2 LTR MaLR 1 327 0 2 1231 660 246 79 11 chr6 84689791 84689968 -64827069 + RMER30 DNA MER1_type 7 195 -7 2 1231 1941 192 27 16 chr6 84690178 84690548 -64826489 + ORR1D1 LTR MaLR 1 374 0 2 1231 385 284 74 0 chr6 84690659 84690754 -64826283 + PB1D10 SINE Alu 2 103 -14 2 1231 450 0 0 0 chr6 84690754 84690804 -64826233 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 1231 21 0 0 0 chr6 84690827 84690848 -64826189 + AT_rich Low_complexity Low_complexity 1 21 0 2 1231 234 255 0 19 chr6 84691318 84691370 -64825667 + MER57D LTR ERV1 297 347 -64 2 1231 232 224 0 0 chr6 84692046 84692095 -64824942 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1231 191 180 33 0 chr6 84692116 84692177 -64824860 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 2 1231 627 356 32 16 chr6 84692324 84692572 -64824465 + MLT1H LTR MaLR 94 345 -204 2 1231 298 268 62 16 chr6 84693727 84693856 -64823181 + Lx8 LINE L1 7060 7194 -279 2 1231 239 0 32 0 chr6 84693984 84694015 -64823022 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1231 358 268 274 8 chr6 84694178 84694302 -64822735 - RSINE1 SINE B4 -7 158 2 2 1231 213 319 27 40 chr6 84699259 84699334 -64817703 - B4A SINE B4 -205 87 14 2 1231 306 329 0 0 chr6 84699272 84699342 -64817695 - ID4 SINE ID -8 75 6 2 1231 268 140 20 0 chr6 84699434 84699484 -64817553 + Lx4A LINE L1 7007 7057 -1 2 1231 225 0 0 0 chr6 84699691 84699716 -64817321 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1231 519 17 0 0 chr6 84699716 84699775 -64817262 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1231 231 36 0 0 chr6 84699777 84699805 -64817232 + (CAG)n Simple_repeat Simple_repeat 2 29 0 2 1231 273 29 0 0 chr6 84700030 84700064 -64816973 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1231 1002 194 10 5 chr6 84701434 84701626 -64815411 - Lx5 LINE L1 -3 7047 6855 2 1231 534 103 0 0 chr6 84703280 84703358 -64813679 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 1231 207 211 0 0 chr6 84704329 84704367 -64812670 + (TAG)n Simple_repeat Simple_repeat 2 39 0 2 1231 357 355 116 35 chr6 84704422 84704766 -64812271 + L1M3a LINE L1 200 571 -5560 2 1231 271 288 68 0 chr6 84705368 84705441 -64811596 + ID4_ SINE ID 6 83 0 2 1231 939 208 58 22 chr6 84705472 84705729 -64811308 + MLT1A1 LTR MaLR 115 400 -8 2 1231 634 276 54 26 chr6 84705729 84706218 -64810819 + L1M3a LINE L1 963 1460 -4681 2 1231 1143 204 14 14 chr6 84706370 84706579 -64810458 + B3 SINE B2 2 210 -6 2 1231 29 28 0 0 chr6 84706580 84706616 -64810421 + AT_rich Low_complexity Low_complexity 1 36 0 2 1231 559 200 23 84 chr6 84707213 84707344 -64809693 + ID_B1 SINE B4 102 224 0 2 1231 255 232 280 7 chr6 84707484 84707627 -64809410 + L1M3a LINE L1 2204 2385 -3819 2 1231 326 291 103 60 chr6 84707661 84707895 -64809142 + L1M3a LINE L1 3155 3398 -2809 2 1231 669 317 121 53 chr6 84707971 84708600 -64808437 - L1M4c LINE L1 -5155 1229 557 2 1231 2750 43 6 12 chr6 84708600 84708932 -64808105 - L1_Mus2 LINE L1 0 6566 6237 2 1231 669 317 121 53 chr6 84708932 84708965 -64808072 - L1M4c LINE L1 -5828 556 522 2 1231 418 263 174 10 chr6 84709270 84709466 -64807571 - L1M4c LINE L1 -6124 260 33 2 1231 609 275 145 46 chr6 84709500 84709824 -64807213 + ORR1E LTR MaLR 1 356 -3 2 1231 2846 60 2 144 chr6 84709849 84710299 -64806738 + RLTR10 LTR ERVK 1 386 -4 2 1231 17354 23 0 1 chr6 84710315 84712261 -64804776 + RLTR10-int LTR ERVK 41 1984 -3 2 1231 2935 57 2 115 chr6 84712263 84712698 -64804339 + RLTR10 LTR ERVK 1 386 -4 2 1231 864 317 108 13 chr6 84712711 84712880 -64804157 + L1MC3 LINE L1 5655 5831 -1954 2 1231 1187 88 0 0 chr6 84712880 84713027 -64804010 + B1_Mus1 SINE Alu 1 147 -1 2 1231 864 320 96 10 chr6 84713027 84713472 -64803565 + L1MC3 LINE L1 5832 6326 -7 2 1231 6778 90 54 66 chr6 84714321 84715282 -64801755 + L1Md_Gf LINE L1 1 755 -5767 2 1231 227 330 41 62 chr6 84715282 84715379 -64801658 + RLTR45 LTR ERVK 4 98 -384 2 1231 6778 90 54 66 chr6 84715379 84715870 -64801167 + L1Md_Gf LINE L1 756 1142 -5380 2 1231 36494 40 0 0 chr6 84715836 84720220 -64796817 + L1Md_T LINE L1 1203 5586 -297 2 1231 9003 33 0 0 chr6 84720220 84721216 -64795821 + L1Md_T LINE L1 5587 6582 0 2 1231 590 293 89 26 chr6 84722320 84722590 -64794447 - MLT1A0 LTR MaLR -77 288 2 2 1231 274 313 165 0 chr6 84722991 84723106 -64793931 + B1F SINE Alu 1 134 -15 2 1231 345 270 52 76 chr6 84723287 84723602 -64793435 + MTEa LTR MaLR 68 362 -17 2 1231 1587 236 28 6 chr6 84723613 84723971 -64793066 + Lx6 LINE L1 7072 7437 -23 2 1231 317 24 24 0 chr6 84724389 84724431 -64792606 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1231 346 357 98 66 chr6 84724442 84724985 -64792052 + MER21B LTR ERV1 118 677 -186 2 1231 311 228 117 19 chr6 84726822 84726925 -64790112 - MER53 DNA hAT -80 113 1 2 1231 3117 119 12 36 chr6 84727391 84727861 -64789176 + Lx3B LINE L1 6353 6818 -155 2 1231 1091 81 0 0 chr6 84727861 84727997 -64789040 + B1_Mus2 SINE Alu 2 137 -10 2 1231 549 0 0 0 chr6 84727997 84728058 -64788979 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 2 1231 3117 119 12 36 chr6 84728058 84728144 -64788893 + Lx3B LINE L1 6819 6896 -77 2 1231 188 32 97 0 chr6 84728156 84728187 -64788850 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1231 461 17 17 0 chr6 84728477 84728535 -64788502 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 2 1231 246 125 0 0 chr6 84728537 84728585 -64788452 + (CAGA)n Simple_repeat Simple_repeat 1 48 0 2 1231 210 171 24 0 chr6 84728856 84728897 -64788140 + A-rich Low_complexity Low_complexity 2 43 0 2 1231 387 0 0 0 chr6 84728901 84728944 -64788093 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1231 25 65 0 0 chr6 84729370 84729416 -64787621 + AT_rich Low_complexity Low_complexity 1 46 0 2 1231 233 358 20 95 chr6 84732155 84732303 -64784734 - MIR SINE MIR -80 182 46 2 1231 221 400 18 0 chr6 84732747 84732857 -64784180 - L2b LINE L2 -8 3367 3256 2 1231 275 281 114 0 chr6 84733099 84733213 -64783824 + MLT1A1 LTR MaLR 278 404 -4 2 1231 1099 61 0 63 chr6 84733570 84733728 -64783309 + B1_Mus1 SINE Alu 1 148 0 2 1231 205 274 32 16 chr6 84735555 84735618 -64781419 + L2a LINE L2 3362 3425 -1 2 1231 795 242 32 28 chr6 84735676 84735965 -64781072 + MTEa LTR MaLR 53 379 0 2 1231 59 15 0 0 chr6 84736033 84736099 -64780938 + AT_rich Low_complexity Low_complexity 1 66 0 2 1231 257 252 198 24 chr6 84736506 84736632 -64780405 - MIR SINE MIR -21 241 94 2 1231 1564 207 62 11 chr6 84737299 84737429 -64779608 - ORR1D1 LTR MaLR 0 374 248 2 1231 180 0 0 0 chr6 84737429 84737449 -64779588 + (CAGG)n Simple_repeat Simple_repeat 3 22 0 2 1231 1564 207 62 11 chr6 84737449 84737674 -64779363 - ORR1D1 LTR MaLR -127 247 2 2 1231 335 363 58 35 chr6 84738214 84738388 -64778649 + MLT1L LTR MaLR 98 275 -335 2 1231 264 30 0 0 chr6 84738486 84738519 -64778518 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1231 698 334 53 31 chr6 84738523 84738817 -64778220 - B4 SINE B4 0 292 10 3 1231 238 242 29 29 chr6 84739245 84739313 -64777724 + ID4 SINE ID 2 69 -14 3 1231 180 0 0 0 chr6 84739357 84739377 -64777660 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 3 1231 394 283 183 75 chr6 84739471 84739777 -64777260 - ORR1E LTR MaLR -18 341 3 3 1231 324 298 163 11 chr6 84740069 84740259 -64776778 + L1MEc LINE L1 780 998 -5402 3 1231 734 293 117 25 chr6 84740267 84740822 -64776215 + Lx9 LINE L1 6861 7466 -178 3 1231 261 0 0 0 chr6 84740822 84740851 -64776186 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1231 315 0 0 0 chr6 84740853 84740888 -64776149 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1231 270 0 0 0 chr6 84740888 84740917 -64776120 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 1231 33 66 0 0 chr6 84741025 84741086 -64775951 + AT_rich Low_complexity Low_complexity 1 61 0 3 1231 478 292 108 0 chr6 84741468 84741653 -64775384 - ID_B1 SINE B4 -15 209 5 3 1231 24 53 0 0 chr6 84741925 84741963 -64775074 + AT_rich Low_complexity Low_complexity 1 38 0 3 1231 32 57 0 0 chr6 84742086 84742139 -64774898 + AT_rich Low_complexity Low_complexity 1 53 0 3 1231 301 187 39 39 chr6 84742300 84742378 -64774659 + ID4 SINE ID 1 78 -5 3 1231 234 174 0 0 chr6 84742379 84742425 -64774612 + A-rich Low_complexity Low_complexity 1 46 0 3 1231 856 258 34 15 chr6 84743329 84743534 -64773503 - ID_B1 SINE B4 -15 209 1 3 1231 474 310 0 0 chr6 84745270 84745383 -64771654 - PB1D7 SINE Alu -1 119 7 3 1231 345 286 126 0 chr6 84745381 84745500 -64771537 - B1F1 SINE Alu -15 134 1 3 1231 222 303 108 18 chr6 84747394 84747505 -64769532 + MIRc SINE MIR 50 170 -98 3 1231 2106 145 123 0 chr6 84748649 84749063 -64767974 + Lx4A LINE L1 6558 7022 -36 3 1231 207 163 47 0 chr6 84750379 84750422 -64766615 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 3 1231 215 237 67 17 chr6 84750682 84750742 -64766295 + B1_Mur1 SINE Alu 79 141 -8 3 1231 548 249 49 9 chr6 84750854 84750872 -64766165 + ID_B1 SINE B4 68 110 -182 3 1231 253 258 32 53 chr6 84750872 84750966 -64766071 + PB1 SINE Alu 1 92 -35 3 1231 548 249 49 9 chr6 84750966 84751010 -64766027 + ID_B1 SINE B4 111 223 -69 3 1231 324 120 0 0 chr6 84751246 84751296 -64765741 + (T)n Simple_repeat Simple_repeat 1 50 0 3 1231 1135 64 0 0 chr6 84751298 84751438 -64765599 - B1_Mus2 SINE Alu -7 140 1 3 1231 7257 73 19 0 chr6 84751506 84753162 -64763875 + L1_Mus2 LINE L1 4870 6563 -3 3 1231 27 0 0 0 chr6 84753162 84753189 -64763848 + AT_rich Low_complexity Low_complexity 1 27 0 3 1231 276 293 62 54 chr6 84753204 84753334 -64763703 + MER2B DNA MER2_type 198 328 -8 3 1231 31 44 0 0 chr6 84753833 84753878 -64763159 + AT_rich Low_complexity Low_complexity 1 45 0 3 1231 369 292 131 0 chr6 84754787 84754917 -64762120 + B1F SINE Alu 3 149 0 3 1231 1788 175 31 64 chr6 84758258 84758649 -64758388 + ORR1C1 LTR MaLR 1 378 0 3 1231 8551 79 14 4 chr6 84758992 84760967 -64756070 + L1_Mus1 LINE L1 4584 6564 -3 3 1231 482 228 101 24 chr6 84761386 84761650 -64755387 - ORR1D1 LTR MaLR -46 328 1 3 1231 21 57 0 0 chr6 84761658 84761693 -64755344 + AT_rich Low_complexity Low_complexity 1 35 0 3 1231 497 30 0 29 chr6 84763888 84763946 -64753091 + (TTC)n Simple_repeat Simple_repeat 3 59 0 3 1231 963 64 0 0 chr6 84763946 84764086 -64752951 + (CTG)n Simple_repeat Simple_repeat 2 141 0 3 1231 497 30 0 29 chr6 84764086 84764095 -64752942 + (TTC)n Simple_repeat Simple_repeat 3 11 0 3 1231 2071 120 32 0 chr6 84764236 84764544 -64752493 - ORR1A3 LTR MaLR -8 318 1 3 1231 567 29 0 0 chr6 84764661 84764730 -64752307 + (TC)n Simple_repeat Simple_repeat 1 69 0 3 1231 429 20 0 0 chr6 84764730 84764779 -64752258 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1231 9525 59 7 3 chr6 84764824 84766793 -64750244 - L1Md_F2 LINE L1 0 6582 4608 3 1231 252 264 49 16 chr6 84766851 84766974 -64750063 + L1MA6 LINE L1 6141 6267 -33 3 1231 1682 187 150 8 chr6 84767047 84767413 -64749624 - MTC LTR MaLR -3 418 1 3 1231 4770 178 106 35 chr6 84767413 84768586 -64748451 - MTC-int LTR MaLR 0 1258 3 3 1231 608 266 0 7 chr6 84768588 84768728 -64748309 - MTC LTR MaLR 0 419 281 3 1231 424 274 87 29 chr6 84768633 84768964 -64748073 + Charlie1a DNA MER1_type 895 1278 -177 3 1231 448 308 139 52 chr6 84769132 84769420 -64747617 - MLT1D LTR MaLR -25 480 168 3 1231 300 254 15 0 chr6 84769863 84769930 -64747107 + PB1D9 SINE Alu 45 112 -8 3 1231 390 184 48 0 chr6 84771090 84771215 -64745822 + (TA)n Simple_repeat Simple_repeat 2 132 0 3 1231 5702 151 41 1 chr6 84771699 84772741 -64744296 + L1_Mur2 LINE L1 4416 5499 -378 3 1231 888 214 20 20 chr6 84772756 84772977 -64744060 - ORR1C2-int LTR MaLR -1419 544 331 3 1231 195 42 0 0 chr6 84772989 84773013 -64744024 + (TTTTTA)n Simple_repeat Simple_repeat 5 28 0 3 1231 9671 34 18 1 chr6 84773018 84774867 -64742170 - L1Md_F2 LINE L1 -2 6580 4688 3 1231 600 219 18 79 chr6 84774867 84775031 -64742006 - ORR1C2-int LTR MaLR -1171 338 185 3 1231 6179 63 11 2 chr6 84775031 84775873 -64741164 + L1_Mus1 LINE L1 5719 6567 0 3 1231 745 283 42 0 chr6 84775883 84776074 -64740963 - ORR1C2-int LTR MaLR -1310 199 1 3 1231 1844 169 57 24 chr6 84776074 84776444 -64740593 - ORR1C2 LTR MaLR 0 384 3 3 1231 1856 138 25 12 chr6 84776590 84776914 -64740123 + ORR1A4 LTR MaLR 1 328 -1 3 1231 4292 167 45 107 chr6 84776916 84777954 -64739083 + ORR1A4-int LTR MaLR 2 975 -988 3 1231 4047 133 20 40 chr6 84777954 84778194 -64738843 - L1_Mur2 LINE L1 -280 5597 5362 3 1231 5046 88 6 1 chr6 84778194 84778899 -64738138 - L1_Mus3 LINE L1 0 6638 5931 3 1231 4047 133 20 40 chr6 84778899 84779349 -64737688 - L1_Mur2 LINE L1 -516 5361 4921 3 1231 1302 94 188 29 chr6 84779347 84779587 -64737450 + L1_Mur2 LINE L1 5600 5877 0 3 1231 21 0 0 0 chr6 84779906 84779927 -64737110 + AT_rich Low_complexity Low_complexity 1 21 0 3 1231 30 77 0 0 chr6 84780483 84780548 -64736489 + AT_rich Low_complexity Low_complexity 1 65 0 3 1231 4481 43 2 9 chr6 84780637 84781177 -64735860 + L1_Mm LINE L1 5046 5586 -297 3 1231 8111 39 11 1 chr6 84781177 84782162 -64734875 + L1Md_F2 LINE L1 5587 6581 -1 3 1231 4481 43 2 9 chr6 84782162 84782179 -64734858 + L1_Mm LINE L1 5587 5599 -284 3 1231 24 32 0 0 chr6 84782532 84782563 -64734474 + AT_rich Low_complexity Low_complexity 1 31 0 3 1231 594 229 196 0 chr6 84782976 84783155 -64733882 - B3 SINE B2 -1 215 2 3 1231 654 355 85 38 chr6 84783229 84783698 -64733339 + L1MEg1 LINE L1 16 506 -5729 3 1231 623 273 141 29 chr6 84783787 84784093 -64732944 - MLT1A0 LTR MaLR -23 342 3 3 1231 207 0 0 0 chr6 84784176 84784199 -64732838 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1231 345 292 169 46 chr6 84784417 84784728 -64732309 + L1MEg1 LINE L1 1678 2064 -5269 3 1231 387 0 0 0 chr6 84785507 84785550 -64731487 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1231 324 271 175 67 chr6 84786238 84786415 -64730622 + B3 SINE B2 1 199 -17 3 1231 360 111 0 0 chr6 84786415 84786469 -64730568 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1231 324 271 175 67 chr6 84786469 84786485 -64730552 + B3 SINE B2 200 215 -1 3 1231 1457 276 112 61 chr6 84786505 84787603 -64729434 - L1MC LINE L1 -1053 5093 3940 3 1231 496 290 25 10 chr6 84787769 84787971 -64729066 - L1MC LINE L1 -2499 3647 3443 3 1231 624 248 80 7 chr6 84788325 84788475 -64728562 + B3A SINE B2 8 168 -30 3 1231 387 0 0 0 chr6 84788476 84788519 -64728518 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 3 1231 266 330 34 0 chr6 84788520 84788638 -64728399 - L1MC LINE L1 -3450 2696 2575 3 1231 2260 256 98 22 chr6 84788856 84789635 -64727402 + Lx9 LINE L1 6623 7421 -223 3 1231 477 0 0 0 chr6 84789635 84789688 -64727349 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1231 1232 335 82 28 chr6 84789688 84789785 -64727252 + Lx9 LINE L1 7333 7431 -42 3 1231 3199 66 24 5 chr6 84789804 84790229 -64726808 + L1_Mus2 LINE L1 6134 6566 0 3 1231 21 0 0 0 chr6 84790234 84790255 -64726782 + AT_rich Low_complexity Low_complexity 1 21 0 3 1231 230 331 224 51 chr6 84790270 84790601 -64726436 + L2 LINE L2 2520 2907 -512 3 1231 456 239 58 29 chr6 84791454 84791592 -64725445 + B1F SINE Alu 1 142 -7 3 1231 2725 67 6 0 chr6 84791923 84792281 -64724756 - L1_Mus1 LINE L1 0 6567 6208 3 1231 2462 92 38 0 chr6 84792281 84792627 -64724410 + L1Md_F2 LINE L1 5864 6222 -360 3 1231 565 312 78 0 chr6 84792771 84792989 -64724048 + MER2 DNA MER2_type 17 251 -94 3 1231 502 235 30 22 chr6 84793287 84793422 -64723615 + B1_Mur1 SINE Alu 2 137 -12 3 1231 529 130 165 0 chr6 84794353 84794468 -64722569 + B1_Mur4 SINE Alu 4 137 -13 3 1231 183 42 0 0 chr6 84794469 84794493 -64722544 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1231 1252 87 6 6 chr6 84794968 84795141 -64721896 + B2_Mm1t SINE B2 2 174 -19 3 1231 316 306 141 18 chr6 84795295 84795458 -64721579 - Lx8 LINE L1 -116 7357 7175 3 1231 190 0 32 32 chr6 84796310 84796341 -64720696 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1231 203 280 280 0 chr6 84797164 84797339 -64719698 - MIR SINE MIR 0 262 39 3 1231 225 0 0 0 chr6 84799463 84799499 -64717538 + Lx2 LINE L1 6962 6997 0 3 1231 745 284 83 24 chr6 84799506 84799902 -64717135 - L1MA7 LINE L1 -462 5829 5363 3 1231 23 0 0 0 chr6 84800219 84800242 -64716795 + AT_rich Low_complexity Low_complexity 1 23 0 3 1231 219 114 0 0 chr6 84800552 84800587 -64716450 + (CAGAGA)n Simple_repeat Simple_repeat 6 40 0 3 1231 272 213 16 0 chr6 84801141 84801202 -64715835 + ID4 SINE ID 2 63 -20 3 1231 3430 38 2 12 chr6 84802036 84802464 -64714573 - L1Md_F2 LINE L1 -4 6578 6155 3 1231 982 233 122 20 chr6 84802550 84802795 -64714242 + MTD LTR MaLR 81 350 -69 3 1231 1495 226 66 6 chr6 84802804 84803124 -64713913 + MTD LTR MaLR 1 339 -80 3 1232 342 264 100 75 chr6 84805782 84805942 -64711095 + RSINE1 SINE B4 2 165 0 3 1232 23 33 0 0 chr6 84806074 84806104 -64710933 + AT_rich Low_complexity Low_complexity 1 30 0 3 1232 261 0 0 0 chr6 84808040 84808069 -64708968 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 3 1232 21 36 0 0 chr6 84808853 84808881 -64708156 + AT_rich Low_complexity Low_complexity 1 28 0 3 1232 790 272 65 0 chr6 84808952 84809136 -64707901 - ID_B1 SINE B4 -20 204 9 4 1232 212 309 0 14 chr6 84809196 84809265 -64707772 + GA-rich Low_complexity Low_complexity 2 69 0 4 1232 1212 21 14 0 chr6 84809507 84809652 -64707385 - B1_Mus2 SINE Alu 0 147 1 4 1232 234 214 202 10 chr6 84809944 84810043 -64706994 - PB1D7 SINE Alu 0 120 3 4 1232 236 269 0 0 chr6 84810505 84810572 -64706465 + (CATA)n Simple_repeat Simple_repeat 4 70 0 4 1232 234 342 108 36 chr6 84811387 84811581 -64705456 + MLT1C LTR MaLR 1 208 -259 4 1232 329 109 18 0 chr6 84811693 84811748 -64705289 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1232 769 98 18 9 chr6 84811750 84811863 -64705174 - PB1D9 SINE Alu -6 114 1 4 1232 472 268 0 18 chr6 84811897 84812011 -64705026 + MLT1C LTR MaLR 356 467 0 4 1232 183 308 0 19 chr6 84812310 84812363 -64704674 + MIR SINE MIR 201 252 -10 4 1232 524 304 166 20 chr6 84812559 84812855 -64704182 - MER58B DNA MER1_type -2 339 1 4 1232 207 88 0 0 chr6 84812872 84812906 -64704131 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1232 27 49 0 0 chr6 84813321 84813362 -64703675 + AT_rich Low_complexity Low_complexity 1 41 0 4 1232 189 0 0 0 chr6 84813736 84813757 -64703280 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1232 426 180 28 28 chr6 84814051 84814169 -64702868 + PB1D10 SINE Alu 15 127 -22 4 1232 1713 273 39 5 chr6 84814324 84814733 -64702304 - MER82 DNA MER2_type 0 653 231 4 1232 322 203 14 28 chr6 84814807 84814878 -64702159 - ID_B1 SINE B4 -9 215 146 4 1232 312 253 48 0 chr6 84814878 84814890 -64702147 - B1F SINE Alu -9 140 54 4 1232 492 250 99 16 chr6 84815135 84815326 -64701711 - Lx9 LINE L1 -9 7635 7429 4 1232 222 37 0 0 chr6 84815734 84815761 -64701276 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1232 361 242 0 0 chr6 84816215 84816281 -64700756 + MER2 DNA MER2_type 7 72 -273 4 1232 465 250 106 7 chr6 84816288 84816429 -64700608 + RSINE1 SINE B4 2 156 -9 4 1232 553 216 71 7 chr6 84816477 84816631 -64700406 + MER2 DNA MER2_type 96 259 -86 4 1232 248 53 0 26 chr6 84818438 84818477 -64698560 - L1Md_Gf LINE L1 -5509 1013 976 4 1232 342 269 165 35 chr6 84819602 84819802 -64697235 - L1MD1 LINE L1 -94 6148 5923 4 1232 714 241 122 42 chr6 84819824 84820062 -64696975 + B4A SINE B4 36 292 0 4 1232 267 197 326 28 chr6 84820257 84820398 -64696639 - L1MD1 LINE L1 -522 5720 5538 4 1232 21 36 0 0 chr6 84822138 84822166 -64694871 + AT_rich Low_complexity Low_complexity 1 28 0 4 1232 887 284 70 22 chr6 84822929 84823199 -64693838 + B4A SINE B4 1 283 -9 4 1232 323 336 81 29 chr6 84824983 84825256 -64691781 - MER33 DNA MER1_type -37 287 1 4 1232 780 333 81 9 chr6 84826489 84826810 -64690227 - MER2 DNA MER2_type -1 344 1 4 1232 245 234 0 30 chr6 84827210 84827276 -64689761 - L1MC4 LINE L1 -403 7639 7576 4 1232 1236 215 109 10 chr6 84827322 84827633 -64689404 - MTD LTR MaLR -8 411 67 4 1232 225 268 18 0 chr6 84827721 84827777 -64689260 + MTD LTR MaLR 10 66 -355 4 1232 848 178 203 17 chr6 84827789 84827966 -64689071 - B3 SINE B2 -6 210 1 4 1232 814 221 214 32 chr6 84828106 84828358 -64688679 + MTD LTR MaLR 122 419 0 4 1232 290 87 22 0 chr6 84828443 84828489 -64688548 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 4 1232 301 274 50 40 chr6 84828496 84828595 -64688442 - PB1D10 SINE Alu -13 104 5 4 1232 723 325 79 63 chr6 84828948 84829391 -64687646 - LTR40b LTR ERVL -12 450 1 4 1232 1060 179 80 20 chr6 84829536 84829735 -64687302 - B3 SINE B2 -4 212 2 4 1232 1108 103 6 6 chr6 84830278 84830453 -64686584 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 4 1232 953 259 72 31 chr6 84830454 84830844 -64686193 + L1MA6 LINE L1 5584 5989 -311 4 1232 326 314 38 0 chr6 84831022 84831127 -64685910 - PB1D10 SINE Alu -7 110 2 4 1232 1230 182 18 0 chr6 84831528 84831748 -64685289 + URR1B DNA MER1_type 2 225 0 4 1232 747 275 87 8 chr6 84832337 84832411 -64684626 + B4A SINE B4 1 87 -205 4 1232 426 39 0 0 chr6 84832411 84832463 -64684574 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1232 747 275 87 8 chr6 84832463 84832652 -64684385 + B4A SINE B4 88 285 -7 4 1232 510 17 0 0 chr6 84832688 84832747 -64684290 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1232 1303 35 17 0 chr6 84834112 84834285 -64682752 - L1Md_F3 LINE L1 0 6584 6409 4 1232 430 356 81 21 chr6 84834301 84834734 -64682303 - Lx8 LINE L1 -11 7462 7004 4 1232 306 0 0 0 chr6 84835295 84835329 -64681708 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1232 245 238 16 16 chr6 84838027 84838091 -64678946 - ID4_ SINE ID -15 68 5 4 1232 1256 181 88 14 chr6 84838198 84838483 -64678554 + RLTR11A LTR ERVK 134 439 -89 4 1232 27 49 0 0 chr6 84838755 84838796 -64678241 + AT_rich Low_complexity Low_complexity 1 41 0 4 1232 748 262 5 53 chr6 84840718 84840924 -64676113 + B3A SINE B2 3 198 0 4 1232 426 224 81 0 chr6 84840947 84841041 -64675996 + PB1D10 SINE Alu 9 109 -8 4 1232 378 0 0 0 chr6 84841044 84841086 -64675951 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1232 666 25 0 0 chr6 84842870 84842950 -64674087 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1232 376 234 26 0 chr6 84844772 84844849 -64672188 + PB1D10 SINE Alu 39 117 0 4 1232 192 237 90 26 chr6 84847093 84847171 -64669866 + L3 LINE CR1 2463 2545 -1944 4 1232 1216 34 7 0 chr6 84847323 84847469 -64669568 + B1_Mus2 SINE Alu 1 147 0 4 1232 794 251 30 39 chr6 84848150 84848353 -64668684 - B3 SINE B2 0 216 16 4 1232 1950 140 22 19 chr6 84848358 84848722 -64668315 - L1_Mur2 LINE L1 -825 5052 4688 4 1232 3241 164 82 30 chr6 84848715 84849375 -64667662 + Lx5 LINE L1 6374 7043 -7 4 1232 25 51 0 0 chr6 84849401 84849440 -64667597 + AT_rich Low_complexity Low_complexity 1 39 0 4 1232 659 110 263 0 chr6 84849854 84849972 -64667065 - B1_Mur4 SINE Alu 0 150 2 4 1232 331 274 104 55 chr6 84850276 84850519 -64666518 + MLT1B LTR MaLR 12 298 -92 4 1232 859 110 0 0 chr6 84850683 84850801 -64666236 - B1_Mur4 SINE Alu 0 150 33 4 1232 697 291 26 31 chr6 84851981 84852176 -64664861 + B4A SINE B4 97 290 -2 4 1232 476 269 16 32 chr6 84852375 84852498 -64664539 - ID_B1 SINE B4 0 224 104 4 1232 400 297 68 61 chr6 84852498 84852518 -64664519 - B1F SINE Alu -1 144 1 4 1232 293 331 12 68 chr6 84852653 84852815 -64664222 + MER5A1 DNA MER1_type 9 161 -5 4 1232 289 244 52 62 chr6 84853848 84853862 -64663175 - B4 SINE B4 -195 97 3 4 1232 429 210 0 12 chr6 84853862 84853944 -64663093 - B3A SINE B2 -115 83 3 4 1232 3147 189 58 160 chr6 84854242 84855042 -64661995 + L1_Rod LINE L1 4488 5307 -540 4 1232 260 232 143 31 chr6 84855042 84855140 -64661897 + RLTR25B LTR ERVK 401 509 -519 4 1232 742 51 0 10 chr6 84855084 84855183 -64661854 + B1_Mm SINE Alu 50 147 0 4 1232 3147 189 58 160 chr6 84855183 84855406 -64661631 + L1_Rod LINE L1 5308 5537 -310 4 1232 984 236 10 5 chr6 84855406 84855615 -64661422 + B3 SINE B2 1 210 -6 4 1232 3147 189 58 160 chr6 84855615 84855738 -64661299 + L1_Rod LINE L1 5538 5643 -204 4 1232 4067 200 84 38 chr6 84855728 84856822 -64660215 + Lx9 LINE L1 6492 7636 -8 4 1232 263 344 37 37 chr6 84856993 84857129 -64659908 - B1F1 SINE Alu -13 136 1 4 1232 26 0 0 0 chr6 84857933 84857959 -64659078 + AT_rich Low_complexity Low_complexity 1 26 0 4 1232 3111 53 0 2 chr6 84858413 84858807 -64658230 - L1Md_F2 LINE L1 0 6582 6190 4 1232 453 311 16 0 chr6 84858857 84858979 -64658058 - ID_B1 SINE B4 -6 218 95 4 1232 420 335 24 18 chr6 84859700 84859861 -64657176 + B4A SINE B4 122 284 -8 4 1232 357 24 0 0 chr6 84859861 84859903 -64657134 + (CATA)n Simple_repeat Simple_repeat 4 45 0 4 1232 777 177 8 0 chr6 84859972 84860102 -64656935 + B1_Mur4 SINE Alu 1 131 -19 4 1232 846 152 6 6 chr6 84860104 84860387 -64656650 + GA-rich Low_complexity Low_complexity 1 283 0 4 1232 897 46 15 0 chr6 84861136 84861265 -64655772 - B1_Mus1 SINE Alu 0 148 2 4 1232 198 385 38 23 chr6 84861388 84861521 -64655516 - L2 LINE L2 -792 2627 2493 4 1232 714 18 36 9 chr6 84861599 84861711 -64655326 + L1Md_F3 LINE L1 6469 6583 -1 4 1232 351 0 0 0 chr6 84861802 84861841 -64655196 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1232 2307 151 60 15 chr6 84862052 84862515 -64654522 + L1Md_A LINE L1 6097 6580 -2 4 1232 339 176 0 0 chr6 84863523 84863614 -64653423 + GA-rich Low_complexity Low_complexity 2 92 0 4 1232 366 23 0 0 chr6 84864049 84864092 -64652945 + (CAA)n Simple_repeat Simple_repeat 3 45 0 4 1232 273 343 20 0 chr6 84864167 84864269 -64652768 + MLT2B3 LTR ERVL 1 104 -450 4 1232 414 309 84 46 chr6 84864345 84864593 -64652444 + MTEa LTR MaLR 105 377 -2 4 1232 551 275 137 28 chr6 84864835 84865519 -64651518 + L1MCa LINE L1 790 1548 -4960 4 1232 207 0 0 0 chr6 84866123 84866146 -64650891 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1232 22 0 0 0 chr6 84866540 84866562 -64650475 + AT_rich Low_complexity Low_complexity 1 22 0 4 1232 878 157 193 50 chr6 84866565 84866746 -64650291 + B3 SINE B2 5 211 -5 4 1232 261 139 0 0 chr6 84867361 84867404 -64649633 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1232 32 43 0 0 chr6 84868114 84868160 -64648877 + AT_rich Low_complexity Low_complexity 1 46 0 4 1232 259 250 162 0 chr6 84868649 84868717 -64648320 + ID4_ SINE ID 2 80 -3 4 1232 398 363 20 20 chr6 84868995 84869144 -64647893 + B1F2 SINE Alu 1 149 0 4 1232 266 254 0 17 chr6 84869147 84869207 -64647830 + B4A SINE B4 1 59 -233 4 1232 376 362 52 26 chr6 84869208 84869438 -64647599 + L1M4 LINE L1 4605 4840 -1306 5 1232 743 291 82 15 chr6 84869505 84869774 -64647263 + B4A SINE B4 1 287 -5 5 1232 1485 63 16 0 chr6 84869895 84870085 -64646952 + B2_Mm2 SINE B2 1 193 -2 5 1232 640 103 8 33 chr6 84870133 84870253 -64646784 + Lx LINE L1 6538 6654 0 5 1232 660 297 84 48 chr6 84870323 84870907 -64646130 + L1MC3 LINE L1 4614 5218 -928 5 1232 306 254 98 21 chr6 84870944 84871137 -64645900 + L1MC3 LINE L1 5319 5526 -818 5 1232 2093 163 52 16 chr6 84871205 84871606 -64645431 + ORR1B1 LTR MaLR 1 386 -8 5 1232 332 276 165 76 chr6 84871623 84872138 -64644899 + L1MC3 LINE L1 5645 6215 -129 5 1232 306 0 0 0 chr6 84872229 84872263 -64644774 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1232 248 367 0 0 chr6 84873442 84873521 -64643516 + polypurine Low_complexity Low_complexity 4 82 0 5 1232 186 43 0 0 chr6 84874682 84874705 -64642332 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1232 501 92 0 0 chr6 84875057 84875133 -64641904 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 1232 415 292 10 10 chr6 84875150 84875247 -64641790 - PB1 SINE Alu -18 109 13 5 1232 274 274 0 14 chr6 84875883 84875957 -64641080 + ID4 SINE ID 1 73 -10 5 1232 195 69 0 0 chr6 84876176 84876205 -64640832 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 5 1232 457 270 61 57 chr6 84876622 84876834 -64640203 + L1MC4a LINE L1 6682 6894 -988 5 1232 721 252 108 69 chr6 84876847 84876904 -64640133 - MTD LTR MaLR 0 419 374 5 1232 5693 34 0 0 chr6 84876904 84877577 -64639460 + L1Md_T LINE L1 5910 6582 0 5 1232 721 252 108 69 chr6 84877577 84877601 -64639436 - MTD LTR MaLR -46 373 351 5 1232 279 0 0 0 chr6 84877601 84877632 -64639405 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 1232 721 252 108 69 chr6 84877632 84877809 -64639228 - MTD LTR MaLR -69 350 150 5 1232 371 276 62 45 chr6 84878540 84878718 -64638319 + Tigger7 DNA MER2_type 392 572 -1919 5 1232 710 182 406 58 chr6 84878941 84879165 -64637872 + RMER20B LTR ERVK 11 312 -204 5 1232 451 257 9 9 chr6 84879291 84879397 -64637640 - B1F1 SINE Alu -43 106 1 5 1232 974 219 169 12 chr6 84879738 84880066 -64636971 + MTD LTR MaLR 19 398 -21 5 1232 251 324 14 27 chr6 84880478 84880551 -64636486 + ID4 SINE ID 4 75 -8 5 1232 275 0 0 28 chr6 84880583 84880619 -64636418 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 5 1232 260 353 51 7 chr6 84881005 84881142 -64635895 + MIR SINE MIR 77 219 -43 5 1232 351 0 0 0 chr6 84882217 84882256 -64634781 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 5 1232 207 0 0 0 chr6 84882262 84882285 -64634752 + (TTGG)n Simple_repeat Simple_repeat 4 26 0 5 1232 871 51 0 93 chr6 84882288 84882417 -64634620 - B1_Mm SINE Alu -5 142 26 5 1232 400 266 102 71 chr6 84882456 84882624 -64634413 + L1MDa LINE L1 52 209 -6424 5 1232 207 0 0 0 chr6 84882624 84882647 -64634390 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1232 400 266 102 71 chr6 84882647 84882773 -64634264 + L1MDa LINE L1 210 355 -6278 5 1232 360 0 0 0 chr6 84883065 84883105 -64633932 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1232 389 304 31 16 chr6 84884218 84884345 -64632692 + RSINE1 SINE B4 1 129 -36 5 1232 265 131 29 14 chr6 84884362 84884432 -64632605 + (TCTG)n Simple_repeat Simple_repeat 1 71 0 5 1232 241 373 49 14 chr6 84886080 84886224 -64630813 + MLT1A1 LTR MaLR 191 339 -69 5 1232 438 169 0 0 chr6 84886324 84886389 -64630648 + B1_Mur3 SINE Alu 1 65 -84 5 1232 319 352 40 74 chr6 84886389 84886498 -64630539 + B4A SINE B4 86 253 -39 5 1232 7487 88 9 2 chr6 84886500 84888083 -64628954 + L1_Mus3 LINE L1 5040 6632 -6 5 1232 7951 21 15 3 chr6 84888105 84889023 -64628014 + RLTR13B3 LTR ERVK 1 929 0 5 1232 1815 176 97 13 chr6 84890605 84890986 -64626051 + MTC LTR MaLR 1 413 -8 5 1232 441 303 31 56 chr6 84891033 84891194 -64625843 + RSINE1 SINE B4 3 159 -6 5 1232 241 312 85 39 chr6 84891226 84891258 -64625779 + B1F SINE Alu 14 149 0 5 1232 304 326 20 0 chr6 84891258 84891356 -64625681 + ID_B1 SINE B4 125 224 0 5 1232 275 308 122 61 chr6 84892020 84892234 -64624803 + MIRb SINE MIR 15 241 -27 5 1232 1134 274 97 52 chr6 84893126 84894039 -64622998 + L1MD1 LINE L1 3035 3982 -2161 5 1232 243 244 192 32 chr6 84894071 84894133 -64622904 + L1MD1 LINE L1 4620 4677 -1469 5 1232 411 73 0 0 chr6 84894133 84894188 -64622849 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 5 1232 243 244 192 32 chr6 84894188 84894375 -64622662 + L1MD1 LINE L1 4678 4909 -1237 5 1232 343 229 25 125 chr6 84894629 84894749 -64622288 + RSINE1 SINE B4 20 127 -38 5 1232 557 61 0 12 chr6 84894766 84894849 -64622188 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 1232 548 302 157 55 chr6 84894855 84895289 -64621748 + L1MD1 LINE L1 5750 6227 -15 5 1232 738 269 36 13 chr6 84895433 84895643 -64621394 + B3A SINE B2 1 215 -1 5 1232 234 81 0 0 chr6 84895823 84895860 -64621177 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1232 27 73 0 0 chr6 84896517 84896572 -64620465 + AT_rich Low_complexity Low_complexity 1 55 0 5 1232 355 341 16 8 chr6 84897715 84897839 -64619198 - RMER30 DNA MER1_type -18 184 60 5 1232 2322 206 91 8 chr6 84898125 84898755 -64618282 + Lx9 LINE L1 6961 7642 -2 5 1232 633 256 99 11 chr6 84898925 84899107 -64617930 - B3A SINE B2 0 198 1 5 1232 1151 276 96 13 chr6 84899113 84899635 -64617402 - L1MC2 LINE L1 -376 5968 5404 5 1232 767 182 0 21 chr6 84899647 84899787 -64617250 - B1_Mur4 SINE Alu -1 149 13 5 1232 2783 78 8 0 chr6 84900758 84901129 -64615908 + L1_Mus3 LINE L1 6263 6636 -2 5 1232 310 69 155 0 chr6 84901181 84901239 -64615798 + L1_Mus2 LINE L1 6498 6564 -2 5 1232 923 169 6 0 chr6 84901444 84901621 -64615416 + GA-rich Low_complexity Low_complexity 2 179 0 5 1232 432 0 0 0 chr6 84901658 84901706 -64615331 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1232 612 241 16 60 chr6 84901726 84902009 -64615028 - L1M2 LINE L1 -506 5785 5535 5 1232 561 200 53 46 chr6 84902900 84903031 -64614006 + B1_Mur1 SINE Alu 16 147 -2 5 1232 257 380 40 0 chr6 84904313 84904413 -64612624 - PB1D10 SINE Alu -13 104 1 5 1232 499 204 202 9 chr6 84904654 84904768 -64612269 + B1_Mus2 SINE Alu 2 137 -10 5 1232 557 147 33 20 chr6 84904778 84904931 -64612106 + G-rich Low_complexity Low_complexity 3 157 0 5 1232 810 172 8 0 chr6 84905522 84905656 -64611381 + B3 SINE B2 71 205 -11 5 1232 35 41 0 0 chr6 84905656 84905705 -64611332 + AT_rich Low_complexity Low_complexity 1 49 0 5 1232 267 286 148 118 chr6 84906506 84906811 -64610226 - Tigger7 DNA MER2_type -115 2376 2063 5 1232 298 324 10 19 chr6 84906822 84906926 -64610111 + MER20B DNA MER1_type 307 409 -374 5 1232 404 197 150 0 chr6 84907021 84907148 -64609889 + MER20B DNA MER1_type 592 737 -46 5 1232 340 228 139 0 chr6 84907362 84907463 -64609574 + MER2 DNA MER2_type 91 205 -140 5 1232 21 0 0 0 chr6 84907697 84907718 -64609319 + AT_rich Low_complexity Low_complexity 1 21 0 5 1232 491 238 87 40 chr6 84907736 84907885 -64609152 - RSINE1 SINE B4 -7 158 3 5 1232 426 282 58 78 chr6 84908043 84908197 -64608840 - B3A SINE B2 0 198 48 5 1232 1995 147 73 9 chr6 84908390 84908733 -64608304 + ORR1B2 LTR MaLR 1 365 -2 5 1232 1260 89 11 6 chr6 84911149 84911329 -64605708 + B2_Mm2 SINE B2 2 182 -13 5 1232 396 179 22 87 chr6 84912382 84912474 -64604563 + ORR1C2 LTR MaLR 1 86 -298 5 1232 541 179 150 0 chr6 84912473 84912561 -64604476 + MT2A LTR ERVL 369 460 -73 5 1232 510 17 0 0 chr6 84912561 84912620 -64604417 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 5 1232 541 179 150 0 chr6 84912620 84912671 -64604366 + MT2A LTR ERVL 461 528 -5 5 1232 885 203 62 44 chr6 84912756 84912983 -64604054 + ORR1D1 LTR MaLR 1 231 -143 5 1232 726 249 65 114 chr6 84912978 84913286 -64603751 - RMER13A LTR ERVK -469 391 99 5 1232 259 277 10 10 chr6 84913388 84913490 -64603547 + CT-rich Low_complexity Low_complexity 1 102 0 5 1232 267 203 17 0 chr6 84913496 84913555 -64603482 + ORR1C2 LTR MaLR 164 223 -151 5 1232 353 165 141 1 chr6 84913543 84913621 -64603416 - B1_Mur3 SINE Alu -28 92 6 5 1232 802 148 58 29 chr6 84913666 84913805 -64603232 + B1_Mur4 SINE Alu 2 144 -6 5 1232 577 264 44 19 chr6 84914015 84914173 -64602864 + RSINE1 SINE B4 4 165 0 5 1232 628 187 65 0 chr6 84914246 84914369 -64602668 - B1_Mm SINE Alu -12 135 5 5 1232 300 102 0 0 chr6 84915383 84915432 -64601605 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 5 1232 21 0 0 0 chr6 84915449 84915470 -64601567 + AT_rich Low_complexity Low_complexity 1 21 0 5 1232 1207 142 25 76 chr6 84915731 84915967 -64601070 + URR1B DNA MER1_type 1 224 -1 5 1232 930 278 66 47 chr6 84916049 84916742 -64600295 + L1M2 LINE L1 4733 5434 -446 5 1232 1801 251 114 20 chr6 84917058 84917938 -64599099 + L1ME2z LINE L1 5477 6431 -13 5 1232 5040 89 36 33 chr6 84918959 84920420 -64596617 + L1Md_F2 LINE L1 5227 6647 -7 5 1232 369 326 168 69 chr6 84920433 84920612 -64596425 + HAL1 LINE L1 272 469 -2038 5 1232 681 106 0 0 chr6 84920612 84920716 -64596321 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 5 1232 369 326 168 69 chr6 84920716 84920958 -64596079 + HAL1 LINE L1 470 734 -1773 5 1232 580 261 0 0 chr6 84921390 84921501 -64595536 + B3A SINE B2 5 115 -83 5 1232 679 286 306 19 chr6 84921944 84922362 -64594675 + MLT2F LTR ERVL 11 547 -116 5 1232 23 33 0 0 chr6 84922458 84922488 -64594549 + AT_rich Low_complexity Low_complexity 1 30 0 5 1232 4515 158 43 30 chr6 84922553 84923457 -64593580 + Lx4B LINE L1 6112 7027 -31 5 1232 597 64 0 0 chr6 84923469 84923547 -64593490 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 5 1232 769 287 86 47 chr6 84923826 84924082 -64592955 - B4 SINE B4 -24 268 3 5 1232 347 214 38 55 chr6 84924093 84924276 -64592761 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 1232 276 333 19 7 chr6 84924190 84924344 -64592693 + (CAGAGA)n Simple_repeat Simple_repeat 3 158 0 5 1232 1199 61 0 7 chr6 84925245 84925393 -64591644 + B1_Mus2 SINE Alu 1 147 0 5 1232 640 230 43 75 chr6 84925840 84926028 -64591009 - B3A SINE B2 -16 182 1 6 1232 1269 218 14 60 chr6 84928297 84928580 -64588457 - ORR1D1 LTR MaLR -102 272 3 6 1232 374 344 0 0 chr6 84928718 84928814 -64588223 + PB1D10 SINE Alu 1 96 -21 6 1232 22 0 0 0 chr6 84928893 84928915 -64588122 + AT_rich Low_complexity Low_complexity 1 22 0 6 1232 248 353 64 48 chr6 84929206 84929331 -64587706 + Charlie4z DNA MER1_type 25 151 -16 6 1232 767 209 0 8 chr6 84929610 84929872 -64587165 + GA-rich Low_complexity Low_complexity 1 259 0 6 1232 4283 79 0 8 chr6 84929920 84930522 -64586515 + L1Md_F2 LINE L1 4989 5585 -298 6 1232 8240 47 0 0 chr6 84930523 84931517 -64585520 + L1Md_F2 LINE L1 5587 6580 -2 6 1232 415 121 30 0 chr6 84931634 84931700 -64585337 + B1_Mur3 SINE Alu 1 68 -81 6 1232 229 264 30 99 chr6 84931700 84931728 -64585309 + MT2B2 LTR ERVL 173 250 -334 6 1232 297 0 0 0 chr6 84931728 84931761 -64585276 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 6 1232 859 251 5 58 chr6 84931796 84932020 -64585017 - B3 SINE B2 -4 212 1 6 1232 216 246 50 14 chr6 84932542 84932682 -64584355 + (TAGA)n Simple_repeat Simple_repeat 1 145 0 6 1232 295 213 20 41 chr6 84933101 84933199 -64583838 + L1MB3 LINE L1 6025 6120 -63 6 1232 1161 61 0 13 chr6 84933205 84933354 -64583683 + B1_Mm SINE Alu 1 147 0 6 1232 301 200 42 28 chr6 84933370 84933442 -64583595 + B3 SINE B2 1 73 -143 6 1232 35 88 0 0 chr6 84933715 84933806 -64583231 + AT_rich Low_complexity Low_complexity 1 91 0 6 1232 393 22 0 0 chr6 84933871 84933917 -64583120 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1232 396 0 0 0 chr6 84933917 84933960 -64583077 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 19 696 241 184 13 chr6 84934451 84934690 -64582347 - B4A SINE B4 -12 280 1 6 1233 266 323 21 0 chr6 84935244 84935337 -64581700 + Lx8 LINE L1 7174 7268 -205 6 1233 1250 110 16 0 chr6 84935541 84935723 -64581314 + B2_Mm2 SINE B2 2 186 -9 6 1233 579 261 65 45 chr6 84935918 84936163 -64580874 - Lx7 LINE L1 -264 7432 7183 6 1233 310 196 0 0 chr6 84936166 84936222 -64580815 + Lx7 LINE L1 7045 7100 -596 6 1233 3428 210 87 2 chr6 84936221 84937028 -64580009 - Lx7 LINE L1 -650 7046 6172 6 1233 481 148 40 16 chr6 84937041 84937165 -64579872 - Lx7 LINE L1 -161 7535 7409 6 1233 205 41 77 58 chr6 84937745 84937782 -64579255 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 6 1233 376 238 153 16 chr6 84937782 84937906 -64579131 + B1_Mur1 SINE Alu 1 141 -8 6 1233 205 41 77 58 chr6 84937906 84937920 -64579117 + (CAAA)n Simple_repeat Simple_repeat 4 15 0 6 1233 229 349 0 0 chr6 84938120 84938206 -64578831 + MIR SINE MIR 47 132 -76 6 1233 30 83 0 0 chr6 84939636 84939708 -64577329 + AT_rich Low_complexity Low_complexity 1 72 0 6 1233 23 33 0 0 chr6 84939741 84939771 -64577266 + AT_rich Low_complexity Low_complexity 1 30 0 6 1233 2106 86 38 13 chr6 84939780 84940098 -64576939 + L1_Mus3 LINE L1 6310 6635 -3 6 1233 36 0 0 0 chr6 84940098 84940134 -64576903 + AT_rich Low_complexity Low_complexity 1 36 0 6 1233 16491 143 29 23 chr6 84940185 84943303 -64573734 - Lx LINE L1 -4 6650 3551 6 1233 3737 54 4 0 chr6 84943303 84943769 -64573268 - L1_Mus1 LINE L1 0 6567 6100 6 1233 8640 138 30 56 chr6 84943769 84944883 -64572154 - Lx LINE L1 -2336 3550 2406 6 1233 304 304 126 64 chr6 84945225 84945494 -64571543 + L1MEf LINE L1 2561 2851 -4251 6 1233 972 228 19 5 chr6 84945494 84945701 -64571336 + B3 SINE B2 1 210 -6 6 1233 304 304 126 64 chr6 84945701 84945867 -64571170 + L1MEf LINE L1 2852 3023 -4079 6 1233 296 197 0 0 chr6 84945905 84945971 -64571066 + L1MEf LINE L1 3502 3567 -3767 6 1233 216 125 50 0 chr6 84946099 84946139 -64570898 + CT-rich Low_complexity Low_complexity 1 42 0 6 1233 21 57 0 0 chr6 84946355 84946390 -64570647 + AT_rich Low_complexity Low_complexity 1 35 0 6 1233 942 244 96 73 chr6 84946497 84946974 -64570063 - L1MA4 LINE L1 -364 5936 5449 6 1233 214 250 0 0 chr6 84946986 84947054 -64569983 + T-rich Low_complexity Low_complexity 1 68 0 6 1233 477 377 16 5 chr6 84947557 84947741 -64569296 + U2 snRNA snRNA 3 188 0 6 1233 561 218 46 21 chr6 84947787 84947910 -64569127 + B1F SINE Alu 1 115 -5 6 1233 583 232 27 0 chr6 84948919 84949031 -64568006 + B3 SINE B2 2 116 -100 6 1233 714 241 56 43 chr6 84949095 84949325 -64567712 + B4A SINE B4 3 277 -15 6 1233 414 0 0 0 chr6 84949325 84949371 -64567666 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1233 203 32 0 61 chr6 84949383 84949416 -64567621 + (CATATA)n Simple_repeat Simple_repeat 1 31 0 6 1233 573 270 25 110 chr6 84949505 84949540 -64567497 + B3A SINE B2 1 28 -170 6 1233 956 114 23 0 chr6 84949540 84949672 -64567365 + B1_Mus1 SINE Alu 1 135 -13 6 1233 195 42 0 0 chr6 84949672 84949696 -64567341 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1233 573 233 36 58 chr6 84949696 84949888 -64567149 + B3A SINE B2 29 212 -4 6 1233 239 270 125 39 chr6 84949938 84950042 -64566995 + PB1D9 SINE Alu 2 114 -6 6 1233 960 153 185 0 chr6 84950111 84950300 -64566737 - URR1B DNA MER1_type -1 224 1 6 1233 186 103 0 0 chr6 84950998 84951027 -64566010 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1233 621 40 0 0 chr6 84951130 84951206 -64565831 + (CTG)n Simple_repeat Simple_repeat 1 76 0 6 1233 590 252 41 0 chr6 84951212 84951335 -64565702 - B1_Mur1 SINE Alu -20 129 2 6 1233 665 266 73 14 chr6 84951395 84951733 -64565304 + L1MB7 LINE L1 5649 6009 -165 6 1233 29 47 0 0 chr6 84952184 84952227 -64564810 + AT_rich Low_complexity Low_complexity 1 43 0 6 1233 189 0 0 0 chr6 84952579 84952600 -64564437 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1233 866 212 32 21 chr6 84952758 84952927 -64564110 + B3A SINE B2 9 181 -17 6 1233 279 0 0 0 chr6 84952927 84952958 -64564079 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1233 866 212 32 21 chr6 84952958 84952976 -64564061 + B3A SINE B2 182 198 0 6 1233 288 127 0 0 chr6 84953809 84953864 -64563173 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1233 434 318 94 29 chr6 84954143 84954418 -64562619 - L2a LINE L2 -9 3417 3125 6 1233 408 182 43 43 chr6 84954460 84954552 -64562485 + PB1D10 SINE Alu 21 112 -5 6 1233 202 303 0 0 chr6 84955315 84955381 -64561656 + A-rich Low_complexity Low_complexity 1 66 0 6 1233 21 57 0 0 chr6 84956070 84956105 -64560932 + AT_rich Low_complexity Low_complexity 1 35 0 6 1233 465 326 60 27 chr6 84956362 84956545 -64560492 - MER58A DNA MER1_type -32 192 4 6 1233 324 0 0 0 chr6 84956636 84956672 -64560365 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 6 1233 1771 100 42 0 chr6 84956857 84957118 -64559919 - RLTR1B LTR ERV1 -76 436 165 6 1233 1315 29 12 6 chr6 84957187 84957358 -64559679 - L1Md_F3 LINE L1 0 6584 6413 6 1233 325 270 26 19 chr6 84957651 84957806 -64559231 + (CAGAGA)n Simple_repeat Simple_repeat 6 161 0 6 1233 355 284 45 51 chr6 84957808 84957964 -64559073 - MER112 DNA MER1_type -66 195 41 6 1233 235 114 0 0 chr6 84958014 84958049 -64558988 - B3 SINE B2 -181 35 1 6 1233 3141 12 0 0 chr6 84958193 84958539 -64558498 + ORR1A0 LTR MaLR 1 346 0 6 1233 1658 26 0 0 chr6 84958669 84958860 -64558177 + B2_Mm1t SINE B2 1 191 -2 6 1233 327 318 27 55 chr6 84959561 84959744 -64557293 - MER46C DNA MER2_type -77 261 84 6 1233 3101 60 0 8 chr6 84959826 84960226 -64556811 + L1Md_F2 LINE L1 6174 6570 -12 6 1233 403 265 49 0 chr6 84960806 84960908 -64556129 + PB1D10 SINE Alu 3 109 -8 6 1233 481 345 45 5 chr6 84961729 84961927 -64555110 + L2 LINE L2 1172 1377 -2042 6 1233 206 319 29 0 chr6 84962543 84962612 -64554425 + L2 LINE L2 1811 1881 -1538 6 1233 324 304 230 38 chr6 84962643 84962981 -64554056 + L2 LINE L2 2042 2445 -974 6 1233 261 83 0 0 chr6 84962981 84963017 -64554020 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1233 920 177 23 143 chr6 84963336 84963616 -64553421 - MT2A LTR ERVL 0 533 256 6 1233 3729 221 80 39 chr6 84963638 84964103 -64552934 - ERVL-int LTR ERVL -2339 3418 2897 6 1233 1987 146 52 60 chr6 84964103 84964488 -64552549 + ORR1C2 LTR MaLR 1 382 -2 6 1233 3729 197 58 41 chr6 84964488 84965353 -64551684 - ERVL-int LTR ERVL -2861 2896 2054 6 1233 248 302 100 8 chr6 84966025 84966155 -64550882 + ID_B1 SINE B4 83 224 0 6 1233 304 308 97 57 chr6 84966241 84966365 -64550672 + MIRb SINE MIR 25 153 -115 6 1233 21 0 0 0 chr6 84966585 84966606 -64550431 + AT_rich Low_complexity Low_complexity 1 21 0 6 1233 455 162 0 57 chr6 84966632 84966737 -64550300 + PB1D7 SINE Alu 22 120 0 6 1233 587 220 202 0 chr6 84967309 84967482 -64549555 + ID_B1 SINE B4 3 210 -14 6 1233 610 73 0 0 chr6 84967607 84967689 -64549348 - Lx LINE L1 -299 6355 6274 6 1233 230 203 234 0 chr6 84967690 84967754 -64549283 + B1_Mur4 SINE Alu 24 102 -48 6 1233 2261 105 44 34 chr6 84967757 84968142 -64548895 + Lx LINE L1 6263 6651 -3 6 1233 241 224 20 20 chr6 84968598 84968648 -64548389 + B1F1 SINE Alu 5 54 -95 6 1233 665 145 68 8 chr6 84968663 84968795 -64548242 + B1_Mus1 SINE Alu 1 140 -8 6 1233 433 283 112 34 chr6 84970286 84970414 -64546623 + MTEa LTR MaLR 3 145 -234 6 1233 1151 140 87 5 chr6 84970414 84970622 -64546415 - URR1B DNA MER1_type 0 225 1 6 1233 433 283 112 34 chr6 84970622 84970672 -64546365 + MTEa LTR MaLR 146 195 -184 6 1233 1924 174 28 40 chr6 84970665 84971090 -64545947 + RMER10A LTR ERVL 23 442 0 6 1233 843 231 14 13 chr6 84971512 84971705 -64545332 + MTEa LTR MaLR 186 379 0 6 1233 480 224 9 18 chr6 84972285 84972394 -64544643 + U13 snRNA snRNA 1 108 0 6 1233 397 294 98 0 chr6 84972528 84972630 -64544407 + B1F1 SINE Alu 5 116 -33 6 1233 287 342 88 26 chr6 84972630 84972642 -64544395 + ID_B1 SINE B4 86 206 -18 6 1233 336 233 49 57 chr6 84973122 84973245 -64543792 + PB1 SINE Alu 2 123 -4 6 1233 24 0 0 0 chr6 84973450 84973474 -64543563 + AT_rich Low_complexity Low_complexity 1 24 0 6 1233 637 224 106 26 chr6 84973617 84973768 -64543269 + RSINE1 SINE B4 3 165 0 6 1233 225 271 0 0 chr6 84974159 84974207 -64542830 + L2b LINE L2 3228 3275 -100 7 1233 210 37 0 0 chr6 84975114 84975141 -64541896 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 7 1233 2205 148 19 16 chr6 84975392 84975769 -64541268 + ORR1C1 LTR MaLR 1 378 0 7 1233 744 203 13 13 chr6 84975899 84976049 -64540988 + B1_Mur4 SINE Alu 1 150 0 7 1233 207 0 0 0 chr6 84976084 84976107 -64540930 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1233 264 122 0 0 chr6 84976297 84976338 -64540699 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 7 1233 811 191 7 0 chr6 84976339 84976486 -64540551 - B1_Mur1 SINE Alu -1 148 1 7 1233 22 35 0 0 chr6 84976681 84976710 -64540327 + AT_rich Low_complexity Low_complexity 1 29 0 7 1233 286 311 0 6 chr6 84976727 84976807 -64540230 + B1F2 SINE Alu 1 76 -41 7 1233 483 284 107 24 chr6 84976820 84977026 -64540011 + ID_B1 SINE B4 1 223 -1 7 1233 3335 164 88 21 chr6 84977155 84977976 -64539061 + RMER1B Other Other 2 1066 0 7 1233 245 295 8 51 chr6 84978240 84978358 -64538679 + PB1D10 SINE Alu 5 117 0 7 1233 21 36 0 0 chr6 84978392 84978420 -64538617 + AT_rich Low_complexity Low_complexity 1 28 0 7 1233 269 349 132 44 chr6 84978558 84978831 -64538206 - L3 LINE CR1 -26 4463 4167 7 1233 389 319 69 7 chr6 84978935 84979080 -64537957 + MIR SINE MIR 14 167 -95 7 1233 868 106 0 0 chr6 84979207 84979330 -64537707 - B1_Mus1 SINE Alu -25 123 1 7 1233 28 71 0 0 chr6 84980848 84980904 -64536133 + AT_rich Low_complexity Low_complexity 1 56 0 7 1233 529 300 127 126 chr6 84981217 84982028 -64535009 + L1MEc LINE L1 1489 2302 -4098 7 1233 609 52 0 0 chr6 84983000 84983077 -64533960 + (TA)n Simple_repeat Simple_repeat 2 78 0 7 1233 306 283 41 8 chr6 84983104 84983225 -64533812 - HAL1 LINE L1 -326 2181 2057 7 1233 355 299 0 0 chr6 84983247 84983374 -64533663 + CT-rich Low_complexity Low_complexity 2 128 0 7 1233 21 0 0 0 chr6 84983856 84983877 -64533160 + AT_rich Low_complexity Low_complexity 1 21 0 7 1233 5013 205 107 24 chr6 84983960 84984058 -64532979 - Lx7 LINE L1 -4 7692 7591 7 1233 222 37 0 0 chr6 84984058 84984085 -64532952 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 1233 5013 205 107 24 chr6 84984085 84985220 -64531817 - Lx7 LINE L1 -106 7590 6358 7 1233 2249 218 61 22 chr6 84985399 84985976 -64531061 + Lx6 LINE L1 6059 6657 -803 7 1233 653 146 108 27 chr6 84985976 84986122 -64530915 - ORR1A4 LTR MaLR 0 379 212 7 1233 595 281 75 66 chr6 84986123 84986552 -64530485 + L1MB3 LINE L1 5677 6129 -42 7 1233 609 252 14 0 chr6 84986552 84986691 -64530346 + B1_Mur1 SINE Alu 1 141 -8 7 1233 321 26 0 0 chr6 84986692 84986730 -64530307 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 7 1233 426 165 0 0 chr6 84986731 84986810 -64530227 + GA-rich Low_complexity Low_complexity 2 80 0 7 1233 21 0 0 0 chr6 84987267 84987288 -64529749 + AT_rich Low_complexity Low_complexity 1 21 0 7 1233 280 364 41 0 chr6 84987415 84987536 -64529501 - MER46C DNA MER2_type -210 128 3 7 1233 183 42 0 0 chr6 84988800 84988824 -64528213 + (CTTA)n Simple_repeat Simple_repeat 1 24 0 7 1233 507 176 0 81 chr6 84988835 84988946 -64528091 - RSINE1 SINE B4 -61 104 3 7 1233 360 0 0 0 chr6 84989014 84989054 -64527983 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 7 1233 284 263 33 50 chr6 84989107 84989227 -64527810 + L1M3e LINE L1 95 212 -6818 7 1233 450 286 82 38 chr6 84989668 84990035 -64527002 + L1M3e LINE L1 1658 2040 -4990 7 1233 229 315 41 0 chr6 84990655 84990728 -64526309 + ID SINE ID 9 84 -140 7 1233 327 200 6 69 chr6 84990747 84990884 -64526153 + L1MD LINE L1 5597 5731 -443 7 1233 597 339 176 55 chr6 84990926 84991587 -64525450 - MER21B LTR ERV1 -109 754 14 7 1233 1119 302 35 19 chr6 84991639 84992231 -64524806 + L1M4c LINE L1 1253 1854 -4792 7 1233 252 0 0 0 chr6 84992231 84992259 -64524778 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1233 1119 306 62 26 chr6 84992259 84992467 -64524570 + L1M4c LINE L1 1855 2076 -4570 7 1233 239 293 94 35 chr6 84992556 84992641 -64524396 + B1F SINE Alu 1 90 -59 7 1233 288 0 0 0 chr6 84992646 84992678 -64524359 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1233 582 63 0 0 chr6 84992703 84992782 -64524255 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1233 328 272 155 83 chr6 84992782 84992909 -64524128 + L1M4c LINE L1 2345 2487 -4159 7 1233 832 234 19 51 chr6 84992909 84993125 -64523912 + B3 SINE B2 2 210 -6 7 1233 328 272 155 83 chr6 84993125 84993274 -64523763 + L1M4c LINE L1 2488 2641 -4005 7 1233 596 219 0 93 chr6 84993279 84993430 -64523607 + B1_Mur2 SINE Alu 2 138 -11 7 1233 506 171 12 0 chr6 84993433 84993515 -64523522 - B1_Mur1 SINE Alu -16 133 51 7 1233 221 0 0 33 chr6 84993929 84993959 -64523078 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1233 813 219 47 47 chr6 84993978 84994189 -64522848 + B3 SINE B2 5 215 -1 7 1233 434 361 8 0 chr6 84994213 84994335 -64522702 + RSINE1 SINE B4 12 134 -31 7 1233 1091 81 9 3 chr6 84994340 84994665 -64522372 + (GA)n Simple_repeat Simple_repeat 1 326 0 7 1233 733 164 0 0 chr6 84994679 84994801 -64522236 + RLTR11B LTR ERVK 4 125 -328 7 1233 2261 172 36 88 chr6 84994801 84995357 -64521680 + RLTR11A2 LTR ERVK 1 527 0 7 1233 6056 104 62 17 chr6 84995415 84996377 -64520660 + Lx3B LINE L1 5960 6965 -8 7 1233 270 0 0 0 chr6 84996377 84996407 -64520630 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 1233 384 22 0 0 chr6 84996473 84996518 -64520519 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1233 2082 210 30 9 chr6 84996568 84997030 -64520007 + RMER1A Other Other 552 1023 -7 7 1233 442 291 34 41 chr6 84997154 84997301 -64519736 - B1F1 SINE Alu -2 147 2 7 1233 22 56 0 0 chr6 84997351 84997387 -64519650 + AT_rich Low_complexity Low_complexity 1 36 0 7 1233 180 375 0 0 chr6 84997963 84998027 -64519010 + MIRc SINE MIR 44 107 -161 7 1233 185 364 118 0 chr6 84998368 84998478 -64518559 - MIRb SINE MIR -98 170 48 7 1233 391 283 32 40 chr6 85000007 85000132 -64516905 + RSINE1 SINE B4 3 126 -39 1 1233 1655 199 63 0 chr6 85000320 85000667 -64516370 - RLTR19C LTR ERVK -137 369 1 2 1233 644 152 0 18 chr6 85000853 85000967 -64516070 + ORR1C2 LTR MaLR 1 112 -262 3 1233 1158 75 0 0 chr6 85001074 85001221 -64515816 + B1_Mm SINE Alu 1 147 0 4 1233 264 140 100 0 chr6 85001409 85001459 -64515578 - ORR1B2 LTR MaLR -215 152 98 5 1233 252 0 0 0 chr6 85001669 85001697 -64515340 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1233 339 173 0 0 chr6 85001723 85001804 -64515233 + CT-rich Low_complexity Low_complexity 2 82 0 7 1233 430 234 181 6 chr6 85001806 85001971 -64515066 + ORR1C2 LTR MaLR 175 359 -15 3 1233 3690 206 42 53 chr6 85001977 85002922 -64514115 + ORR1C2-int LTR MaLR 2 936 -434 3 1233 705 114 18 0 chr6 85002918 85003032 -64514005 + ORR1C2 LTR MaLR 269 384 0 3 1233 577 298 57 0 chr6 85003058 85003199 -64513838 + RSINE1 SINE B4 3 151 -14 8 1233 481 137 8 8 chr6 85003206 85003324 -64513713 + CT-rich Low_complexity Low_complexity 1 118 0 9 1233 1165 62 14 0 chr6 85003371 85003515 -64513522 + B1_Mm SINE Alu 2 147 0 1 1233 627 237 36 51 chr6 85003588 85003784 -64513253 + B3A SINE B2 6 198 0 1 1233 666 199 138 6 chr6 85004576 85004743 -64512294 + B3 SINE B2 16 204 -12 1 1233 604 214 187 22 chr6 85004763 85004945 -64512092 + B3 SINE B2 3 214 -2 1 1233 1778 173 15 18 chr6 85005232 85005561 -64511476 + MTC LTR MaLR 1 328 -93 1 1233 504 0 0 0 chr6 85005564 85005620 -64511417 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1233 957 237 117 0 chr6 85005623 85005872 -64511165 - B4A SINE B4 -13 279 2 1 1233 573 297 50 8 chr6 85006054 85006292 -64510745 + Lx9 LINE L1 7242 7489 -155 1 1233 414 0 0 0 chr6 85006533 85006579 -64510458 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 1 1233 885 179 102 5 chr6 85007192 85007388 -64509649 + B3 SINE B2 1 215 -1 1 1233 318 333 9 9 chr6 85008278 85008393 -64508644 - PB1D10 SINE Alu -2 115 1 2 1233 684 293 38 11 chr6 85008393 85008473 -64508564 - ID SINE ID -137 87 3 2 1233 635 241 72 23 chr6 85008871 85009092 -64507945 - L1MA8 LINE L1 -192 6099 5868 2 1233 6166 74 4 8 chr6 85009142 85009941 -64507096 - Lx3_Mus LINE L1 -2 7007 6212 2 1233 9327 66 24 1 chr6 85009941 85011469 -64505568 + Lx3_Mus LINE L1 4655 6212 -797 2 1233 236 118 0 0 chr6 85011466 85011500 -64505537 - L1M2 LINE L1 -404 5887 5854 2 1233 563 224 84 0 chr6 85011578 85011721 -64505316 - L1M2 LINE L1 -682 5630 5476 2 1233 350 269 67 0 chr6 85011724 85011828 -64505209 - PB1D10 SINE Alu 0 117 7 2 1233 248 288 41 0 chr6 85011766 85011839 -64505198 - B4 SINE B4 -136 156 81 2 1233 491 198 9 70 chr6 85011840 85011954 -64505083 - L1M2 LINE L1 -808 5483 5377 2 1233 447 52 0 0 chr6 85012223 85012281 -64504756 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 1233 2016 172 11 36 chr6 85012984 85013340 -64503697 + RMER1B Other Other 40 386 -680 2 1233 454 239 124 0 chr6 85013336 85013449 -64503588 + RMER1A Other Other 1 127 -903 2 1233 722 167 54 65 chr6 85013595 85013781 -64503256 + ORR1D1 LTR MaLR 1 184 -190 3 1233 327 78 0 0 chr6 85013782 85013833 -64503204 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1233 283 289 54 22 chr6 85013833 85013925 -64503112 + B3 SINE B2 117 211 -5 3 1233 549 237 65 51 chr6 85013935 85014073 -64502964 + RSINE1 SINE B4 7 146 -19 3 1233 26 0 0 0 chr6 85014097 85014123 -64502914 + AT_rich Low_complexity Low_complexity 1 26 0 3 1233 335 284 97 21 chr6 85014128 85014272 -64502765 + RSINE1 SINE B4 9 163 -2 3 1233 343 308 44 15 chr6 85014594 85014613 -64502424 + B1F2 SINE Alu 10 148 -1 3 1233 405 259 17 35 chr6 85014613 85014729 -64502308 + ID_B1 SINE B4 110 223 -1 3 1233 746 232 99 68 chr6 85014936 85015269 -64501768 + L1MB8 LINE L1 5618 5964 -214 3 1233 506 237 0 56 chr6 85015273 85015398 -64501639 + ID_B1 SINE B4 81 198 -26 3 1233 467 294 39 28 chr6 85015431 85015613 -64501424 + L1MB8 LINE L1 5987 6170 -8 3 1233 574 286 0 0 chr6 85015614 85015754 -64501283 - ID_B1 SINE B4 -6 218 79 4 1233 703 213 25 21 chr6 85015906 85016093 -64500944 + B3 SINE B2 6 194 -1 4 1233 753 270 67 5 chr6 85016176 85016398 -64500639 + 7SK RNA RNA 1 236 -95 4 1233 662 188 20 41 chr6 85016398 85016553 -64500484 + B1_Mur4 SINE Alu 1 149 -1 4 1233 224 149 0 21 chr6 85016555 85016603 -64500434 + A-rich Low_complexity Low_complexity 2 48 0 4 1233 569 270 19 75 chr6 85016629 85016789 -64500248 + RSINE1 SINE B4 15 165 0 4 1233 1261 109 11 0 chr6 85016835 85017019 -64500018 - B2_Mm1t SINE B2 -6 187 2 4 1233 579 275 35 41 chr6 85017334 85017531 -64499506 + ID_B1 SINE B4 1 196 -28 4 1233 280 209 186 0 chr6 85017594 85017723 -64499314 - Charlie20a DNA Charlie -310 497 345 4 1233 274 250 25 12 chr6 85018533 85018614 -64498423 + ID4 SINE ID 2 83 0 4 1233 808 193 132 6 chr6 85019725 85019907 -64497130 - B3 SINE B2 -11 205 1 5 1233 261 184 0 0 chr6 85019910 85019959 -64497078 - PB1D10 SINE Alu -27 90 42 5 1233 666 170 55 7 chr6 85019971 85020183 -64496854 - Lx9 LINE L1 0 7644 7401 5 1233 556 291 0 13 chr6 85020248 85020398 -64496639 - B1_Mur1 SINE Alu 0 149 2 5 1233 504 254 126 26 chr6 85020400 85020630 -64496407 - Lx9 LINE L1 -6 7638 7386 5 1233 186 43 0 0 chr6 85020656 85020679 -64496358 + (TC)n Simple_repeat Simple_repeat 1 23 0 5 1233 3989 223 45 20 chr6 85020695 85021578 -64495459 - Lx9 LINE L1 -431 7213 6309 5 1233 256 149 0 3 chr6 85021636 85021691 -64495346 + PB1D9 SINE Alu 10 63 -86 5 1233 418 219 0 45 chr6 85021686 85021796 -64495241 + B1F SINE Alu 28 132 -17 5 1233 666 0 0 0 chr6 85021803 85021877 -64495160 + (GAAAA)n Simple_repeat Simple_repeat 3 76 0 5 1233 330 26 0 0 chr6 85022101 85022140 -64494897 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1233 1085 188 69 0 chr6 85022318 85022520 -64494517 + B3 SINE B2 1 216 0 6 1233 333 250 131 0 chr6 85022646 85022730 -64494307 - B1_Mur2 SINE Alu -53 96 2 6 1233 1075 246 0 0 chr6 85022747 85022962 -64494075 - B3 SINE B2 0 216 2 6 1233 265 291 0 0 chr6 85022995 85023050 -64493987 + PB1D9 SINE Alu 1 55 -65 6 1233 279 0 0 0 chr6 85023667 85023698 -64493339 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 6 1233 625 224 74 43 chr6 85023791 85023954 -64493083 - Lx8 LINE L1 -385 7088 6921 6 1233 285 212 163 12 chr6 85023959 85024045 -64492992 + ID_B1 SINE B4 124 222 -2 6 1233 497 137 20 0 chr6 85024058 85024160 -64492877 + (TAGA)n Simple_repeat Simple_repeat 3 106 0 6 1233 806 214 0 0 chr6 85024540 85024685 -64492352 - B1_Mur2 SINE Alu 0 149 5 6 1233 577 297 19 49 chr6 85024807 85024896 -64492141 + ID SINE ID 2 83 -141 6 1233 1562 162 128 26 chr6 85024896 85025239 -64491798 - ORR1C1 LTR MaLR 0 378 1 7 1233 577 297 19 49 chr6 85025239 85025354 -64491683 + ID_B1 SINE B4 84 200 -24 6 1233 350 214 19 18 chr6 85025425 85025531 -64491506 - B1_Mur4 SINE Alu -8 112 8 7 1233 438 174 31 42 chr6 85025762 85025858 -64491179 - Lx8 LINE L1 -373 7100 7006 7 1233 279 237 16 94 chr6 85026008 85026147 -64490890 - B3A SINE B2 -1 215 84 7 1233 234 239 88 15 chr6 85026105 85026173 -64490864 - MTC LTR MaLR -235 184 112 7 1233 294 87 0 0 chr6 85026919 85026965 -64490072 + (A)n Simple_repeat Simple_repeat 1 46 0 7 1233 279 79 0 0 chr6 85027049 85027087 -64489950 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 7 1233 7105 106 37 10 chr6 85027123 85027247 -64489790 - Lx LINE L1 -1 6653 6523 7 1233 189 0 0 0 chr6 85027247 85027268 -64489769 + (CCCA)n Simple_repeat Simple_repeat 2 22 0 7 1233 7105 113 32 8 chr6 85027268 85028529 -64488508 - Lx LINE L1 -132 6522 5244 7 1233 495 0 0 0 chr6 85028529 85028584 -64488453 + (TA)n Simple_repeat Simple_repeat 2 56 0 7 1233 6248 131 21 5 chr6 85028584 85028915 -64488122 - Lx LINE L1 -640 5243 4904 7 1233 4735 72 6 6 chr6 85028911 85029551 -64487486 - MusHAL1 LINE L1 -1207 1505 866 8 1233 409 164 0 0 chr6 85029559 85029632 -64487405 - MTC LTR MaLR -339 82 10 7 1233 207 0 0 0 chr6 85030801 85030824 -64486213 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1233 873 248 38 142 chr6 85031003 85031482 -64485555 - RMER10A LTR ERVL -13 429 1 8 1233 435 198 142 0 chr6 85031773 85031879 -64485158 - B3A SINE B2 -77 121 1 8 1233 1195 244 62 95 chr6 85032150 85032540 -64484497 - MTE2a LTR MaLR 0 379 3 8 1233 221 284 0 0 chr6 85032578 85032645 -64484392 + MIR SINE MIR 122 188 -74 8 1233 570 229 0 56 chr6 85032818 85032943 -64484094 - B3A SINE B2 -80 118 1 8 1233 180 0 0 0 chr6 85032959 85032979 -64484058 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1233 434 182 34 0 chr6 85032995 85033083 -64483954 - ID_B1 SINE B4 -35 189 99 8 1233 1663 137 148 3 chr6 85033345 85033682 -64483355 - ORR1B1 LTR MaLR -8 386 1 8 1233 996 159 117 43 chr6 85033758 85033820 -64483217 + MTC LTR MaLR 1 62 -359 9 1233 4705 150 91 14 chr6 85033820 85034663 -64482374 + RMER13B LTR ERVK 1 908 0 9 1233 996 159 117 43 chr6 85034663 85034830 -64482207 + MTC LTR MaLR 63 247 -174 9 1233 5562 108 40 21 chr6 85034842 85035624 -64481413 - Lx2 LINE L1 -2 6995 6197 9 1233 1683 31 0 0 chr6 85035624 85035816 -64481221 - B2_Mm1a SINE B2 -1 192 1 9 1233 5562 108 40 21 chr6 85035816 85035888 -64481149 - Lx2 LINE L1 -801 6196 6125 9 1233 1835 137 10 7 chr6 85035888 85036183 -64480854 + Lx2 LINE L1 5828 6123 -874 9 1233 750 191 61 0 chr6 85036196 85036343 -64480694 + MTC LTR MaLR 258 413 -8 9 1233 472 291 128 31 chr6 85037366 85037593 -64479444 + MER21B LTR ERV1 114 362 -501 9 1233 876 243 36 16 chr6 85038017 85038209 -64478828 + B3 SINE B2 1 196 -20 9 1233 269 270 110 19 chr6 85038206 85038361 -64478676 - RMER10A LTR ERVL -29 413 245 9 1233 281 227 0 0 chr6 85038377 85038443 -64478594 + GA-rich Low_complexity Low_complexity 2 67 0 9 1233 342 326 14 7 chr6 85039189 85039334 -64477703 + MLT1A1 LTR MaLR 218 363 -45 9 1233 759 120 24 0 chr6 85039452 85039577 -64477460 - B1_Mur4 SINE Alu -21 129 2 9 1233 180 0 0 0 chr6 85039708 85039728 -64477309 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1233 415 208 10 0 chr6 85039876 85039972 -64477065 - ID_B1 SINE B4 -6 218 122 1 1233 228 238 105 23 chr6 85040469 85040555 -64476482 - L1M4c LINE L1 -4761 1623 1531 1 1233 564 15 0 0 chr6 85041058 85041123 -64475914 + (TTGG)n Simple_repeat Simple_repeat 4 68 0 1 1233 556 186 63 24 chr6 85041349 85041476 -64475561 - B3 SINE B2 -1 215 84 1 1233 249 212 188 0 chr6 85041473 85041553 -64475484 - RMER4B LTR ERVK -371 95 1 1 1233 609 267 31 6 chr6 85041649 85041811 -64475226 - B3A SINE B2 -30 168 3 1 1233 399 293 19 21 chr6 85044501 85044733 -64472304 - RMER16-int LTR ERVK -3240 2166 1986 1 1233 326 235 12 12 chr6 85044987 85045073 -64471964 - RMER16-int LTR ERVK -4585 1582 1497 1 1233 444 238 53 38 chr6 85045735 85045866 -64471171 - RMER16-int LTR ERVK -5069 337 205 1 1233 3185 37 59 0 chr6 85047247 85047621 -64469416 - MTA_Mm LTR MaLR 0 396 1 1 1233 9324 31 6 1 chr6 85047621 85048714 -64468323 - MTA_Mm-int LTR MaLR 0 1098 1 1 1233 1211 48 4 5 chr6 85048714 85048884 -64468153 - MTA_Mm LTR MaLR 0 419 248 1 1233 608 205 60 0 chr6 85049252 85049369 -64467668 - ETnERV2-int LTR ERVK -213 7193 7070 1 1233 1939 40 4 4 chr6 85049370 85049623 -64467414 - MTA_Mm LTR MaLR -143 253 1 1 1233 414 0 0 0 chr6 85051568 85051614 -64465423 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1233 219 88 0 0 chr6 85052229 85052263 -64464774 + (CAGCC)n Simple_repeat Simple_repeat 3 36 0 1 1233 3038 59 18 8 chr6 85052856 85053248 -64463789 + MTA_Mm LTR MaLR 1 396 0 1 1233 953 264 50 14 chr6 85054808 85055089 -64461948 - B4 SINE B4 0 292 2 1 1233 428 244 35 9 chr6 85055116 85055232 -64461805 + B1F SINE Alu 2 120 -29 1 1233 3049 144 16 6 chr6 85055238 85055749 -64461288 + RLTR17 LTR ERVK 1 516 -176 1 1233 1139 93 0 0 chr6 85055774 85055924 -64461113 - L1_Mm LINE L1 -849 5034 4885 1 1233 289 200 17 0 chr6 85055924 85055984 -64461053 + RMER3D-int LTR ERVK 2178 2238 -604 1 1233 2122 178 101 11 chr6 85055989 85056535 -64460502 + MYSERV16_I-int LTR ERVK 1732 2326 0 1 1233 1805 213 79 43 chr6 85056535 85057069 -64459968 + RLTR31_Mur LTR ERVK 1 553 0 1 1233 198 247 0 0 chr6 85057076 85057153 -64459884 + GA-rich Low_complexity Low_complexity 2 78 0 1 1233 200 328 0 0 chr6 85057244 85057302 -64459735 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1233 1221 261 84 0 chr6 85057534 85057795 -64459242 + B4A SINE B4 10 292 0 1 1233 204 135 0 0 chr6 85057827 85057864 -64459173 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1233 10122 75 42 23 chr6 85058057 85060512 -64456525 + L1VL2 LINE L1 66 2572 -1043 1 1233 351 0 0 0 chr6 85060512 85060551 -64456486 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 154 297 323 21 0 chr6 85065720 85065813 -64451224 - B1F SINE Alu -15 134 40 1 1234 229 311 104 0 chr6 85065857 85065963 -64451074 - B1F SINE Alu -32 117 1 1 1234 240 204 0 20 chr6 85066214 85066264 -64450773 + B4A SINE B4 196 244 -48 1 1234 636 14 0 0 chr6 85066290 85066363 -64450674 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1234 572 268 19 7 chr6 85066708 85066862 -64450175 - ID_B1 SINE B4 -52 172 17 1 1234 287 241 55 44 chr6 85067440 85067531 -64449506 + ID_B1 SINE B4 129 220 -4 1 1234 555 161 154 0 chr6 85068484 85068614 -64448423 - B1_Mur4 SINE Alu 0 150 1 1 1234 2314 66 31 28 chr6 85068928 85069254 -64447783 + IAPLTR2b LTR ERVK 1 327 0 1 1234 1794 239 163 32 chr6 85069622 85070828 -64446209 - RMER1A Other Other 0 1066 1 1 1234 271 327 115 63 chr6 85071097 85071307 -64445730 + MLT1A1 LTR MaLR 7 224 -184 1 1234 2487 49 23 3 chr6 85071307 85071616 -64445421 + L1_Mus1 LINE L1 6253 6567 0 1 1234 271 327 115 63 chr6 85071616 85071770 -64445267 + MLT1A1 LTR MaLR 225 390 -18 1 1234 259 229 16 0 chr6 85072041 85072102 -64444935 + Charlie1 DNA MER1_type 895 956 -1825 1 1234 253 260 175 10 chr6 85072280 85072377 -64444660 + ORR1E LTR MaLR 22 134 -225 1 1234 543 31 0 0 chr6 85072601 85072666 -64444371 + (TTGG)n Simple_repeat Simple_repeat 4 68 0 1 1234 21 57 0 0 chr6 85072834 85072869 -64444168 + AT_rich Low_complexity Low_complexity 1 35 0 1 1234 390 189 207 0 chr6 85072896 85073007 -64444030 - B3 SINE B2 -1 215 82 1 1234 285 262 71 59 chr6 85073044 85073129 -64443908 + B3A SINE B2 58 143 -55 1 1234 431 310 45 75 chr6 85073156 85073355 -64443682 - B3A SINE B2 -3 195 3 1 1234 208 237 0 0 chr6 85074702 85074761 -64442276 + T-rich Low_complexity Low_complexity 1 59 0 1 1234 270 0 0 0 chr6 85074844 85074874 -64442163 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1234 519 60 0 0 chr6 85078840 85078907 -64438130 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1234 250 295 113 80 chr6 85079019 85079041 -64437996 - B4A SINE B4 -46 246 91 1 1234 359 280 147 31 chr6 85079041 85079170 -64437867 - B1F SINE Alu 0 149 6 1 1234 1417 79 16 10 chr6 85079346 85079538 -64437499 + B2_Mm2 SINE B2 3 195 0 1 1234 264 294 31 61 chr6 85079550 85079648 -64437389 + MIR SINE MIR 162 256 -6 1 1234 226 259 126 66 chr6 85079773 85079955 -64437082 + MER33 DNA MER1_type 74 266 -58 1 1234 311 188 71 14 chr6 85079942 85080012 -64437025 - PB1D9 SINE Alu 0 120 47 1 1234 255 257 68 0 chr6 85080183 85080257 -64436780 - ID_B1 SINE B4 0 224 146 1 1234 318 167 0 0 chr6 85080360 85080420 -64436617 + GA-rich Low_complexity Low_complexity 2 61 0 1 1234 313 286 0 0 chr6 85080423 85080493 -64436544 + PB1D10 SINE Alu 11 80 -37 1 1234 207 0 0 0 chr6 85080687 85080710 -64436327 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1234 325 224 0 17 chr6 85080710 85080769 -64436268 - ID4_ SINE ID -14 69 12 1 1234 418 305 110 44 chr6 85081120 85081182 -64435855 - B4A SINE B4 -10 282 221 1 1234 420 20 0 0 chr6 85081182 85081231 -64435806 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1234 598 170 96 26 chr6 85081235 85081350 -64435687 - B1_Mur3 SINE Alu -23 126 4 1 1234 240 267 109 65 chr6 85081350 85081416 -64435621 - MT2B LTR ERVL -341 260 191 1 1234 575 231 52 15 chr6 85081362 85081498 -64435539 - B1_Mur1 SINE Alu 0 149 9 1 1234 475 264 18 9 chr6 85081495 85081606 -64435431 - B4A SINE B4 -64 228 117 1 1234 232 250 164 96 chr6 85081609 85081786 -64435251 + MTC LTR MaLR 12 200 -221 1 1234 821 227 103 0 chr6 85082434 85082637 -64434400 + ID_B1 SINE B4 1 224 0 1 1234 186 315 0 0 chr6 85082792 85082846 -64434191 - MIR SINE MIR -178 84 31 1 1234 268 287 129 0 chr6 85084395 85084496 -64432541 - PB1D7 SINE Alu -1 119 6 1 1234 212 318 36 45 chr6 85084429 85084541 -64432496 - ID_B1 SINE B4 -71 153 43 1 1234 352 222 111 0 chr6 85084818 85084890 -64432147 + B4A SINE B4 16 95 -197 1 1234 549 298 18 24 chr6 85084892 85085057 -64431980 + B3 SINE B2 2 165 -51 1 1234 374 0 22 0 chr6 85085075 85085121 -64431916 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1234 429 54 0 0 chr6 85085141 85085197 -64431840 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1234 198 342 81 24 chr6 85085500 85085623 -64431414 - L3 LINE CR1 -113 4376 4247 1 1234 1100 58 0 0 chr6 85086569 85086708 -64430329 - L1_Mus1 LINE L1 0 6567 6429 1 1234 435 242 43 156 chr6 85088870 85088914 -64428123 + B4 SINE B4 55 96 -196 1 1234 594 177 82 75 chr6 85088914 85089048 -64427989 + B1_Mur4 SINE Alu 3 137 -13 1 1234 435 242 43 156 chr6 85089048 85089189 -64427848 + B4 SINE B4 97 219 -73 1 1234 697 137 35 19 chr6 85089049 85089196 -64427841 + B1_Mus2 SINE Alu 1 149 0 1 1234 1439 67 0 6 chr6 85089403 85089584 -64427453 - B2_Mm2 SINE B2 -14 181 2 1 1234 186 43 0 0 chr6 85089622 85089645 -64427392 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1234 707 197 88 31 chr6 85089645 85089839 -64427198 - B3 SINE B2 -11 205 1 1 1234 565 169 154 0 chr6 85090565 85090695 -64426342 + B1_Mur4 SINE Alu 1 150 0 1 1234 287 241 55 44 chr6 85091634 85091725 -64425312 - ID_B1 SINE B4 -4 220 129 1 1234 559 274 19 7 chr6 85092305 85092459 -64424578 + ID_B1 SINE B4 17 172 -52 1 1234 351 107 54 0 chr6 85092832 85092888 -64424149 - HAL1-3A_ME LINE L1 -824 2034 1976 1 1234 345 109 0 0 chr6 85092917 85092981 -64424056 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1234 258 260 26 123 chr6 85092997 85093020 -64424017 - B4A SINE B4 0 292 271 1 1234 207 0 0 0 chr6 85093020 85093043 -64423994 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1234 775 106 13 0 chr6 85093045 85093196 -64423841 + (TG)n Simple_repeat Simple_repeat 2 154 0 1 1234 258 260 26 123 chr6 85093196 85093283 -64423754 - B4A SINE B4 -22 270 190 1 1234 24 0 0 0 chr6 85096448 85096472 -64420565 + AT_rich Low_complexity Low_complexity 1 24 0 1 1234 303 372 20 49 chr6 85096477 85096723 -64420314 + L1M2 LINE L1 2982 3220 -2923 1 1234 441 297 122 0 chr6 85096830 85096978 -64420059 + B3A SINE B2 3 168 -30 1 1234 233 260 20 0 chr6 85097045 85097095 -64419942 - B3 SINE B2 -77 139 89 1 1234 483 265 17 8 chr6 85097500 85097618 -64419419 + ID_B1 SINE B4 106 224 0 1 1234 1436 92 0 5 chr6 85099486 85099682 -64417355 + B2_Mm2 SINE B2 1 195 0 1 1234 328 339 149 6 chr6 85099718 85099899 -64417138 + ID_B1 SINE B4 2 208 -16 1 1234 218 176 0 56 chr6 85099899 85099953 -64417084 + (CAGAGA)n Simple_repeat Simple_repeat 3 53 0 1 1234 844 179 280 0 chr6 85100065 85100233 -64416804 - B3 SINE B2 0 216 2 1 1234 1926 236 105 55 chr6 85100851 85102571 -64414466 + RMER1B Other Other 1 1062 -4 1 1234 3522 19 5 21 chr6 85102869 85103287 -64413750 + IAPLTR2a LTR ERVK 1 411 0 1 1234 643 180 55 0 chr6 85103660 85103788 -64413249 + B1_Mur4 SINE Alu 14 148 -2 2 1234 265 24 23 23 chr6 85105626 85105669 -64411368 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 2 1234 1206 54 0 0 chr6 85106352 85106494 -64410543 + B1_Mm SINE Alu 1 142 -5 2 1234 207 0 0 0 chr6 85106494 85106517 -64410520 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1234 261 105 0 0 chr6 85106686 85106724 -64410313 + B2_Mm2 SINE B2 1 38 -157 2 1234 394 240 104 90 chr6 85106932 85107148 -64409889 + RLTR13D3 LTR ERVK 946 1114 0 2 1234 222 333 81 24 chr6 85108102 85108225 -64408812 + L3 LINE CR1 4247 4376 -113 2 1234 371 196 29 58 chr6 85108237 85108340 -64408697 + ID_B1 SINE B4 124 223 -1 2 1234 3503 28 2 0 chr6 85108706 85109101 -64407936 + MTA_Mm LTR MaLR 1 396 0 2 1234 198 350 74 54 chr6 85109435 85109583 -64407454 + MIR SINE MIR 31 181 -81 2 1234 796 236 94 0 chr6 85109651 85109854 -64407183 - ID_B1 SINE B4 -2 222 1 2 1234 635 25 0 12 chr6 85112254 85112336 -64404701 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 1234 988 263 0 9 chr6 85112444 85112670 -64404367 - B4A SINE B4 -68 224 1 2 1234 360 181 0 0 chr6 85112923 85113006 -64404031 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1234 423 0 0 0 chr6 85113398 85113445 -64403592 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1234 446 282 0 16 chr6 85113522 85113648 -64403389 - RSINE1 SINE B4 -33 132 9 2 1234 507 237 61 8 chr6 85114095 85114227 -64402810 + B4A SINE B4 6 144 -148 2 1234 533 115 0 11 chr6 85114241 85114329 -64402708 + (GGA)n Simple_repeat Simple_repeat 2 88 0 2 1234 376 343 49 0 chr6 85114342 85114427 -64402610 + B4A SINE B4 125 209 -83 2 1234 335 23 23 0 chr6 85114427 85114471 -64402566 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 2 1234 376 343 49 0 chr6 85114471 85114528 -64402509 + B4A SINE B4 210 273 -19 2 1234 519 17 0 0 chr6 85114721 85114781 -64402256 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1234 234 210 0 46 chr6 85115635 85115700 -64401337 + GA-rich Low_complexity Low_complexity 1 62 0 2 1234 198 210 78 31 chr6 85116029 85116093 -64400944 - MIR SINE MIR -59 149 83 2 1234 552 30 0 0 chr6 85116133 85116199 -64400838 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1234 210 290 9 70 chr6 85116651 85116766 -64400271 + RSINE1 SINE B4 56 163 -2 2 1234 510 301 72 0 chr6 85116870 85117023 -64400014 + RSINE1 SINE B4 2 165 0 2 1234 523 179 0 0 chr6 85117059 85117154 -64399883 + Lx5 LINE L1 6630 6724 -326 2 1234 928 193 53 0 chr6 85117160 85117367 -64399670 + Lx5 LINE L1 6816 7033 -17 2 1234 807 169 0 21 chr6 85117462 85117607 -64399430 - B1_Mur4 SINE Alu 0 150 9 2 1234 196 274 68 14 chr6 85117709 85117783 -64399254 + MIRb SINE MIR 133 210 -58 2 1234 409 86 0 41 chr6 85118005 85118078 -64398959 + (GGGA)n Simple_repeat Simple_repeat 1 70 0 2 1234 313 281 53 86 chr6 85118084 85118271 -64398766 + HAL1-3A_ME LINE L1 2287 2467 -391 2 1234 678 284 18 35 chr6 85118324 85118550 -64398487 - ID_B1 SINE B4 0 224 3 2 1234 279 0 0 0 chr6 85120433 85120464 -64396573 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1234 441 0 0 0 chr6 85120464 85120512 -64396525 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1234 507 328 118 21 chr6 85120512 85120749 -64396288 - B4A SINE B4 -32 260 1 2 1234 478 324 29 0 chr6 85120749 85120885 -64396152 - B1F SINE Alu -1 148 9 2 1234 287 308 35 78 chr6 85121788 85121904 -64395133 + ID_B1 SINE B4 103 213 -11 2 1234 232 267 52 26 chr6 85122135 85122212 -64394825 + RSINE1 SINE B4 82 160 -5 2 1234 251 175 16 48 chr6 85122226 85122352 -64394685 + (TCTCTG)n Simple_repeat Simple_repeat 3 124 0 2 1234 432 0 0 0 chr6 85122354 85122402 -64394635 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1234 1561 234 77 5 chr6 85122623 85123013 -64394024 - MTD LTR MaLR -1 418 1 2 1234 238 167 21 0 chr6 85123020 85123068 -64393969 - MTD-int LTR MaLR -10 1248 1200 2 1234 3046 239 90 89 chr6 85123068 85123280 -64393757 - MTD-int LTR MaLR -30 1228 1067 2 1234 288 0 0 0 chr6 85123280 85123312 -64393725 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1234 3046 239 90 89 chr6 85123312 85123958 -64393079 - MTD-int LTR MaLR -192 1066 419 2 1234 2321 172 2 9 chr6 85123958 85124380 -64392657 - MTC LTR MaLR -2 419 1 2 1234 3046 239 90 89 chr6 85124380 85124742 -64392295 - MTD-int LTR MaLR -840 418 6 2 1234 518 192 78 9 chr6 85124743 85124881 -64392156 - MTD LTR MaLR -20 401 240 2 1234 657 127 212 0 chr6 85124930 85125048 -64391989 - B1_Mus1 SINE Alu -1 147 5 2 1234 588 198 0 0 chr6 85125116 85125232 -64391805 + PB1D7 SINE Alu 5 120 0 2 1234 639 125 0 0 chr6 85125429 85125533 -64391504 + (TG)n Simple_repeat Simple_repeat 2 105 0 2 1234 406 237 75 8 chr6 85125537 85125671 -64391366 - B1F SINE Alu -6 143 2 2 1234 944 256 50 14 chr6 85125698 85125979 -64391058 + B4 SINE B4 2 292 0 2 1234 1061 138 31 31 chr6 85126511 85126705 -64390332 - B2_Mm2 SINE B2 0 195 2 2 1234 486 0 0 0 chr6 85126723 85126777 -64390260 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 2 1234 392 234 9 18 chr6 85126777 85126877 -64390160 - B1_Mur3 SINE Alu -8 141 43 2 1234 708 207 9 18 chr6 85126901 85127082 -64389955 - B3A SINE B2 -4 212 35 2 1234 725 239 0 24 chr6 85127291 85127458 -64389579 - RSINE1 SINE B4 -1 164 2 2 1234 492 272 50 6 chr6 85127596 85127820 -64389217 - L1MEe LINE L1 -4541 1543 1298 2 1234 452 282 25 16 chr6 85127867 85128020 -64389017 - PB1D10 SINE Alu 0 147 1 2 1234 743 226 7 0 chr6 85128020 85128084 -64388953 - ID SINE ID -143 81 17 2 1234 319 242 30 0 chr6 85128081 85128147 -64388890 - RSINE1 SINE B4 -40 125 58 2 1234 201 74 0 0 chr6 85128464 85128491 -64388546 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 2 1234 819 156 7 14 chr6 85128492 85128635 -64388402 - B1_Mus2 SINE Alu -1 146 5 2 1234 1576 228 48 34 chr6 85129211 85129624 -64387413 - MTD LTR MaLR 0 419 1 2 1234 238 170 19 0 chr6 85129806 85129859 -64387178 - MamRep564 Unknown Unknown -152 205 152 2 1234 324 287 67 34 chr6 85129863 85129982 -64387055 - L2a LINE L2 0 3426 3304 2 1234 450 229 20 20 chr6 85130087 85130209 -64386828 + MTD LTR MaLR 38 188 -231 2 1234 699 238 88 6 chr6 85130346 85130528 -64386509 + B3A SINE B2 2 198 0 2 1234 722 259 6 0 chr6 85130565 85130723 -64386314 + B3 SINE B2 1 159 -57 2 1234 670 165 9 9 chr6 85130738 85130848 -64386189 + PB1D9 SINE Alu 2 111 -9 2 1234 408 195 0 12 chr6 85130888 85130971 -64386066 + PB1D9 SINE Alu 2 83 -37 2 1234 557 235 22 4 chr6 85131628 85131762 -64385275 + B4A SINE B4 2 138 -154 2 1234 577 278 22 57 chr6 85131718 85131989 -64385048 - MTC LTR MaLR -143 236 12 2 1234 530 281 11 137 chr6 85131992 85132104 -64384933 + B4A SINE B4 117 229 -63 2 1234 540 232 49 14 chr6 85132104 85132248 -64384789 + B1_Mur1 SINE Alu 1 149 0 2 1234 530 281 11 137 chr6 85132248 85132260 -64384777 + B4A SINE B4 230 230 -62 2 1234 606 181 85 23 chr6 85132260 85132390 -64384647 + B1_Mur3 SINE Alu 4 141 -8 2 1234 459 0 0 0 chr6 85132390 85132441 -64384596 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1234 530 281 11 137 chr6 85132441 85132504 -64384533 + B4A SINE B4 230 281 -11 2 1234 288 241 0 17 chr6 85132859 85132918 -64384119 + ID4_ SINE ID 12 69 -14 2 1234 225 0 0 0 chr6 85132918 85132943 -64384094 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1234 236 250 81 27 chr6 85133124 85133198 -64383839 - PB1D10 SINE Alu -29 88 11 2 1234 393 117 0 0 chr6 85133201 85133261 -64383776 + (TCC)n Simple_repeat Simple_repeat 2 61 0 2 1234 226 235 88 0 chr6 85133366 85133434 -64383603 + ID_B1 SINE B4 146 219 -5 2 1234 308 250 52 13 chr6 85133612 85133689 -64383348 + PB1D9 SINE Alu 41 120 0 2 1234 22 0 0 0 chr6 85133763 85133785 -64383252 + AT_rich Low_complexity Low_complexity 1 22 0 2 1234 243 337 11 0 chr6 85133891 85133983 -64383054 - MER33 DNA MER1_type -231 93 1 2 1234 246 321 26 52 chr6 85133994 85134109 -64382928 - MIR SINE MIR -6 256 145 2 1234 387 279 62 35 chr6 85134269 85134414 -64382623 + B1F2 SINE Alu 1 149 0 2 1234 189 0 0 0 chr6 85137433 85137454 -64379583 + (CCCCG)n Simple_repeat Simple_repeat 4 24 0 2 1234 468 35 0 0 chr6 85139079 85139137 -64377900 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1234 468 0 0 0 chr6 85139157 85139209 -64377828 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1234 380 211 33 12 chr6 85144352 85144467 -64372570 - PB1D7 SINE Alu 0 120 1 2 1234 405 0 0 0 chr6 85145025 85145070 -64371967 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 2 1234 312 0 62 0 chr6 85146011 85146059 -64370978 + (CCCCCA)n Simple_repeat Simple_repeat 3 53 0 2 1234 211 290 119 85 chr6 85146179 85146356 -64370681 + MIR3 SINE MIR 2 184 -24 2 1234 495 33 0 0 chr6 85147080 85147141 -64369896 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1234 202 338 0 26 chr6 85147423 85147499 -64369538 + L2b LINE L2 3297 3370 -5 2 1234 975 200 54 0 chr6 85147509 85147714 -64369323 + B3 SINE B2 1 216 0 2 1234 413 308 7 63 chr6 85147723 85147865 -64369172 + ID_B1 SINE B4 82 215 -9 2 1234 183 330 47 37 chr6 85149375 85149482 -64367555 + L3b LINE CR1 208 315 -167 2 1234 573 223 13 67 chr6 85149934 85150083 -64366954 - MTD LTR MaLR -14 405 265 2 1234 1044 244 22 33 chr6 85150115 85150405 -64366632 - MTD LTR MaLR -126 274 6 2 1234 383 171 0 15 chr6 85150436 85150521 -64366516 + B1_Mur1 SINE Alu 55 136 -13 2 1234 215 31 0 30 chr6 85150521 85150554 -64366483 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 2 1234 218 56 0 27 chr6 85150572 85150609 -64366428 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 1234 922 221 57 5 chr6 85151408 85151617 -64365420 - ID_B1 SINE B4 -3 221 2 2 1234 411 245 66 0 chr6 85154751 85154857 -64362180 - PB1D7 SINE Alu -5 115 3 2 1234 344 289 21 0 chr6 85157077 85157219 -64359818 + (CGTG)n Simple_repeat Simple_repeat 3 147 0 3 1234 233 286 0 0 chr6 85157762 85157811 -64359226 + polypyrimidine Low_complexity Low_complexity 1 49 0 3 1234 672 239 141 5 chr6 85157811 85157996 -64359041 - ID_B1 SINE B4 -8 216 7 3 1234 519 246 238 6 chr6 85158706 85158761 -64358276 + B4 SINE B4 22 106 -186 3 1234 198 0 0 0 chr6 85158761 85158783 -64358254 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 1234 519 246 238 6 chr6 85158783 85158899 -64358138 + B4 SINE B4 107 232 -60 3 1234 573 253 139 25 chr6 85158908 85159066 -64357971 + B3A SINE B2 7 182 -16 3 1234 294 29 0 0 chr6 85159066 85159101 -64357936 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 1234 978 119 0 0 chr6 85159101 85159343 -64357694 + (CA)n Simple_repeat Simple_repeat 1 242 0 3 1234 292 248 133 25 chr6 85159577 85159697 -64357340 - ID_B1 SINE B4 0 224 92 3 1234 485 154 114 9 chr6 85160588 85160693 -64356344 - B4 SINE B4 -74 218 103 3 1234 658 148 110 59 chr6 85161389 85161525 -64355512 + B1_Mur2 SINE Alu 2 144 -5 3 1234 591 135 0 0 chr6 85161539 85161635 -64355402 + (CTG)n Simple_repeat Simple_repeat 2 97 0 3 1234 747 229 73 11 chr6 85161668 85161845 -64355192 + B4 SINE B4 103 290 -2 3 1234 2021 125 116 8 chr6 85162054 85162426 -64354611 - MTC LTR MaLR -9 412 1 3 1234 377 248 49 104 chr6 85162675 85162819 -64354218 - RSINE1 SINE B4 -18 147 12 3 1234 252 0 0 0 chr6 85163898 85163926 -64353111 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1234 229 204 0 0 chr6 85165311 85165365 -64351672 + A-rich Low_complexity Low_complexity 1 54 0 3 1234 441 0 0 0 chr6 85166073 85166122 -64350915 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1234 201 182 22 22 chr6 85166523 85166568 -64350469 + CT-rich Low_complexity Low_complexity 1 45 0 3 1234 212 149 21 0 chr6 85167069 85167116 -64349921 + CT-rich Low_complexity Low_complexity 4 51 0 3 1234 194 328 58 79 chr6 85169185 85169374 -64347663 - L2b LINE L2 -60 3315 3131 3 1234 238 325 120 30 chr6 85169559 85169860 -64347177 - L2b LINE L2 -531 2888 2561 3 1234 186 43 0 0 chr6 85171027 85171050 -64345987 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1234 650 197 0 8 chr6 85171601 85171719 -64345318 + PB1D10 SINE Alu 1 117 0 3 1234 200 146 71 24 chr6 85172256 85172298 -64344739 + MIRc SINE MIR 107 150 -118 3 1234 180 111 0 0 chr6 85173575 85173602 -64343435 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 3 1234 381 22 0 0 chr6 85174289 85174335 -64342702 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1234 468 209 0 11 chr6 85175131 85175223 -64341814 - ID_B1 SINE B4 -5 219 129 3 1234 588 244 15 7 chr6 85175255 85175391 -64341646 - B1F2 SINE Alu 0 149 13 3 1234 368 289 85 63 chr6 85178012 85178422 -64338615 + L2 LINE L2 2329 2747 -672 3 1234 261 0 0 0 chr6 85178876 85178905 -64338132 + (TGAG)n Simple_repeat Simple_repeat 3 31 0 3 1234 501 255 0 146 chr6 85178905 85179070 -64337967 - B1F SINE Alu -6 143 3 3 1234 180 0 0 0 chr6 85179153 85179173 -64337864 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 3 1234 22 0 0 0 chr6 85180262 85180284 -64336753 + GC_rich Low_complexity Low_complexity 1 22 0 3 1234 602 307 75 88 chr6 85182987 85183455 -64333582 + MER70A LTR ERVL 1 462 -10 3 1234 183 100 0 0 chr6 85183462 85183492 -64333545 + (CCCCCA)n Simple_repeat Simple_repeat 6 35 0 3 1234 192 77 0 0 chr6 85183655 85183681 -64333356 + (TTCCC)n Simple_repeat Simple_repeat 5 30 0 3 1234 269 312 42 84 chr6 85183681 85183696 -64333341 - ID_B1 SINE B4 0 224 111 3 1234 415 250 77 0 chr6 85183696 85183800 -64333237 - B1F SINE Alu -8 141 30 3 1234 347 231 25 25 chr6 85184145 85184225 -64332812 + B4A SINE B4 73 152 -140 3 1234 525 99 25 0 chr6 85184166 85184247 -64332790 + B1F2 SINE Alu 9 91 -58 3 1234 21 36 0 0 chr6 85184386 85184414 -64332623 + AT_rich Low_complexity Low_complexity 1 28 0 3 1234 406 212 25 0 chr6 85184420 85184500 -64332537 - B1_Mur1 SINE Alu -41 108 27 3 1234 402 269 69 9 chr6 85185283 85185399 -64331638 - B1F SINE Alu -21 128 6 3 1234 875 239 28 0 chr6 85185297 85185477 -64331560 - ID_B1 SINE B4 -31 193 9 3 1234 396 0 0 0 chr6 85186251 85186295 -64330742 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1234 185 261 111 22 chr6 85187471 85187561 -64329476 - MIR SINE MIR -78 130 33 3 1234 376 188 37 12 chr6 85188672 85188753 -64328284 - PB1D7 SINE Alu -4 116 34 3 1234 843 10 0 0 chr6 85188912 85189008 -64328029 + (TC)n Simple_repeat Simple_repeat 2 97 0 3 1234 252 0 0 0 chr6 85189628 85189656 -64327381 + (CAA)n Simple_repeat Simple_repeat 3 30 0 3 1234 502 287 0 42 chr6 85189660 85189802 -64327235 + ID_B1 SINE B4 79 214 -10 3 1234 288 0 0 0 chr6 85190184 85190216 -64326821 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 1234 834 278 21 35 chr6 85190824 85191199 -64325838 + B4A SINE B4 1 259 -33 3 1234 405 0 0 0 chr6 85191199 85191244 -64325793 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1234 901 224 73 24 chr6 85191308 85191562 -64325475 + Kanga11a DNA Tc2 148 569 -1176 3 1234 382 260 0 0 chr6 85191570 85191666 -64325371 + L1M5 LINE L1 5672 5767 -357 3 1234 793 207 7 0 chr6 85191974 85192119 -64324918 + B1_Mur2 SINE Alu 3 148 -1 3 1234 24 32 0 0 chr6 85192158 85192189 -64324848 + AT_rich Low_complexity Low_complexity 1 31 0 3 1234 1158 95 0 0 chr6 85192298 85192446 -64324591 + B1_Mus1 SINE Alu 1 148 0 3 1234 331 314 139 20 chr6 85192513 85192757 -64324280 + MLT1L LTR MaLR 173 445 -165 3 1234 632 223 196 30 chr6 85192898 85193097 -64323940 + B4 SINE B4 1 232 -60 3 1234 683 250 33 44 chr6 85193104 85193284 -64323753 + B3A SINE B2 4 181 -17 3 1234 1667 182 108 9 chr6 85193284 85193627 -64323410 - ORR1C1 LTR MaLR 0 378 2 3 1234 501 17 0 0 chr6 85193632 85193690 -64323347 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1234 402 306 136 18 chr6 85193828 85194114 -64322923 - L1M5 LINE L1 -854 5292 4973 3 1234 421 244 269 18 chr6 85194340 85194511 -64322526 + B3 SINE B2 2 215 -1 3 1234 552 242 17 0 chr6 85195050 85195170 -64321867 + RSINE1 SINE B4 4 125 -40 3 1234 243 0 0 0 chr6 85195229 85195256 -64321781 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1234 225 132 0 0 chr6 85195271 85195309 -64321728 + (GGGAGA)n Simple_repeat Simple_repeat 3 40 0 3 1234 1435 157 255 0 chr6 85195336 85195630 -64321407 + ORR1D1 LTR MaLR 2 370 -4 3 1234 336 243 54 0 chr6 85195676 85195750 -64321287 + B4 SINE B4 9 86 -206 3 1234 299 371 0 0 chr6 85195764 85195861 -64321176 + B4A SINE B4 70 166 -126 3 1234 494 289 42 0 chr6 85196086 85196228 -64320809 - B1F SINE Alu -1 148 1 3 1234 286 261 261 0 chr6 85196545 85196660 -64320377 - ID_B1 SINE B4 -2 222 78 3 1235 1216 191 184 16 chr6 85196970 85197290 -64319747 - MTE2b LTR MaLR -5 374 1 3 1235 518 289 49 0 chr6 85197830 85197972 -64319065 + B4 SINE B4 7 155 -137 3 1235 252 0 0 0 chr6 85197978 85198006 -64319031 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1235 221 296 56 0 chr6 85198329 85198400 -64318637 - L2b LINE L2 -4 3371 3297 3 1235 776 241 87 26 chr6 85198759 85198989 -64318048 - B4 SINE B4 0 292 49 3 1235 531 31 0 0 chr6 85199138 85199203 -64317834 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1235 651 196 96 24 chr6 85199396 85199575 -64317462 - B3 SINE B2 -14 184 1 3 1235 481 282 28 7 chr6 85199579 85199722 -64317315 - ID_B1 SINE B4 -1 223 78 3 1235 898 257 134 47 chr6 85200071 85200239 -64316798 + MTEb LTR MaLR 7 183 -196 3 1235 709 295 46 25 chr6 85200239 85200524 -64316513 + B4A SINE B4 2 292 0 3 1235 898 257 134 47 chr6 85200524 85200698 -64316339 + MTEb LTR MaLR 184 378 -1 3 1235 1240 41 0 0 chr6 85201372 85201517 -64315520 - B1_Mus1 SINE Alu -2 146 2 3 1235 1008 248 87 68 chr6 85201604 85201972 -64315065 + MTEa LTR MaLR 5 379 0 3 1235 898 150 7 26 chr6 85204713 85204864 -64312173 + B1_Mus1 SINE Alu 1 148 0 3 1235 264 285 30 42 chr6 85204928 85205093 -64311944 - Charlie4a DNA MER1_type -29 479 317 3 1235 258 236 55 0 chr6 85205114 85205169 -64311868 - RSINE1 SINE B4 -59 106 49 3 1235 487 216 0 20 chr6 85205159 85205258 -64311779 - ID_B1 SINE B4 -16 208 112 3 1235 296 185 0 58 chr6 85205339 85205408 -64311629 + ID_B1 SINE B4 144 208 -16 3 1235 443 198 35 0 chr6 85205398 85205484 -64311553 + RSINE1 SINE B4 49 137 -28 3 1235 831 262 42 14 chr6 85205632 85205849 -64311188 + ID_B1 SINE B4 2 224 0 3 1235 422 209 0 11 chr6 85205877 85205964 -64311073 + B1F SINE Alu 63 148 -1 3 1235 379 241 0 35 chr6 85205964 85206050 -64310987 + ID SINE ID 2 84 -140 3 1235 282 56 0 0 chr6 85206275 85206311 -64310726 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1235 267 300 103 32 chr6 85206653 85206844 -64310193 + MIRb SINE MIR 40 250 -12 3 1235 398 188 42 51 chr6 85207952 85208070 -64308967 - MIRb SINE MIR -116 152 36 3 1235 1286 238 98 34 chr6 85208097 85208453 -64308584 + MTEa LTR MaLR 1 379 0 3 1235 832 248 99 0 chr6 85209802 85210004 -64307033 - ID_B1 SINE B4 0 224 3 3 1235 770 201 50 0 chr6 85210103 85210242 -64306795 - B1_Mur1 SINE Alu -1 148 3 3 1235 750 294 0 21 chr6 85210290 85210478 -64306559 - B3A SINE B2 -13 185 2 4 1235 470 191 11 0 chr6 85210816 85210905 -64306132 + B1_Mur1 SINE Alu 59 148 -1 4 1235 905 248 57 0 chr6 85210991 85211201 -64305836 + ID_B1 SINE B4 3 224 0 4 1235 518 208 0 7 chr6 85211539 85211689 -64305348 + (TG)n Simple_repeat Simple_repeat 1 149 0 4 1235 622 236 59 198 chr6 85211741 85211982 -64305055 - B4 SINE B4 0 292 81 4 1235 597 227 99 78 chr6 85211982 85212173 -64304864 - B3A SINE B2 -3 195 1 4 1235 622 236 59 198 chr6 85212173 85212269 -64304768 - B4 SINE B4 -212 80 2 4 1235 218 32 0 31 chr6 85212371 85212403 -64304634 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 4 1235 200 119 28 15 chr6 85213795 85213844 -64303193 + MIR SINE MIR 110 157 -119 4 1235 517 253 77 66 chr6 85216523 85216556 -64300481 - B2_Mm2 SINE B2 0 195 164 4 1235 479 82 14 0 chr6 85216556 85216629 -64300408 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 1235 752 218 47 7 chr6 85216629 85216777 -64300260 - B3 SINE B2 -51 165 12 4 1235 1058 236 24 0 chr6 85216780 85216992 -64300045 - ID_B1 SINE B4 -6 218 2 4 1235 275 0 29 0 chr6 85219784 85219819 -64297218 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1235 231 36 0 0 chr6 85219839 85219867 -64297170 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1235 655 204 59 1 chr6 85220034 85220177 -64296860 - B1F1 SINE Alu 0 149 9 4 1235 309 26 0 0 chr6 85220355 85220393 -64296644 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1235 669 236 61 0 chr6 85221239 85221404 -64295633 - B3A SINE B2 -8 190 16 4 1235 1652 116 5 0 chr6 85221404 85221628 -64295409 - URR1B DNA MER1_type 0 225 1 4 1235 381 93 0 0 chr6 85221645 85221699 -64295338 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1235 451 236 89 8 chr6 85221699 85221823 -64295214 - ID_B1 SINE B4 -7 217 84 4 1235 2199 128 6 17 chr6 85221834 85222192 -64294845 + ORR1B1 LTR MaLR 41 394 0 4 1235 371 189 56 42 chr6 85222192 85222264 -64294773 - ID4_ SINE ID -9 74 2 4 1235 366 108 0 0 chr6 85222268 85222333 -64294704 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1235 520 318 44 119 chr6 85222356 85222649 -64294388 - B4A SINE B4 -20 272 2 4 1235 547 295 0 0 chr6 85222659 85222781 -64294256 - ID_B1 SINE B4 -8 216 95 4 1235 326 310 53 146 chr6 85223414 85223564 -64293473 - B4A SINE B4 0 292 2 4 1235 1217 95 0 12 chr6 85223564 85223735 -64293302 - B2_Mm2 SINE B2 -25 170 2 4 1235 914 266 34 0 chr6 85223742 85223949 -64293088 - B3 SINE B2 -1 215 2 4 1235 774 239 85 67 chr6 85223951 85224175 -64292862 - B4A SINE B4 -63 229 2 4 1235 399 229 24 12 chr6 85224738 85224822 -64292215 + RSINE1 SINE B4 1 85 -80 4 1235 1239 61 0 0 chr6 85225052 85225199 -64291838 + B1_Mus1 SINE Alu 2 148 0 4 1235 1311 245 39 108 chr6 85225704 85226111 -64290926 + MTEa LTR MaLR 1 379 0 4 1235 432 0 0 0 chr6 85226280 85226328 -64290709 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1235 315 0 0 0 chr6 85226328 85226362 -64290675 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1235 477 34 0 0 chr6 85227333 85227392 -64289645 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1235 228 291 0 0 chr6 85227444 85227499 -64289538 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1235 252 77 0 0 chr6 85227956 85227995 -64289042 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1235 999 141 0 13 chr6 85228013 85228164 -64288873 - B1_Mur4 SINE Alu -1 149 1 4 1235 789 219 0 67 chr6 85228185 85228395 -64288642 - B3A SINE B2 -1 197 2 4 1235 271 96 39 0 chr6 85228603 85228655 -64288382 + (CATA)n Simple_repeat Simple_repeat 2 55 0 4 1235 315 0 0 0 chr6 85228655 85228689 -64288348 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1235 892 215 131 0 chr6 85228691 85228882 -64288155 + B3 SINE B2 1 216 0 4 1235 906 230 79 46 chr6 85228898 85229139 -64287898 + B4A SINE B4 41 289 -3 4 1235 511 277 36 91 chr6 85229594 85229661 -64287376 + CYRA11_Mm Unknown Y-chromosome 110 367 -249 4 1235 1170 148 19 19 chr6 85229661 85229867 -64287170 - URR1B DNA MER1_type 0 225 20 4 1235 777 253 33 6 chr6 85230295 85230478 -64286559 + ID_B1 SINE B4 3 190 -34 4 1235 1188 237 77 15 chr6 85232223 85232497 -64284540 + B4 SINE B4 2 292 0 4 1235 406 308 111 29 chr6 85232795 85233002 -64284035 + MLT1J LTR MaLR 287 510 -2 4 1235 894 202 26 10 chr6 85233158 85233353 -64283684 + B3A SINE B2 1 198 0 4 1235 387 0 0 0 chr6 85233511 85233554 -64283483 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1235 401 224 11 35 chr6 85233755 85233861 -64283176 + RSINE1 SINE B4 1 104 -61 4 1235 725 276 75 5 chr6 85233946 85234132 -64282905 + ID_B1 SINE B4 3 201 -23 4 1235 183 42 0 0 chr6 85234152 85234176 -64282861 + (CCTA)n Simple_repeat Simple_repeat 2 25 0 4 1235 491 209 9 0 chr6 85234176 85234291 -64282746 + CT-rich Low_complexity Low_complexity 2 117 0 4 1235 1143 78 0 0 chr6 85234442 85234584 -64282453 - B1_Mus2 SINE Alu -5 142 1 4 1235 33 0 0 0 chr6 85234584 85234617 -64282420 + AT_rich Low_complexity Low_complexity 1 33 0 4 1235 582 281 39 0 chr6 85234617 85234745 -64282292 - ID_B1 SINE B4 -13 211 79 4 1235 449 282 18 0 chr6 85235151 85235261 -64281776 + PB1D10 SINE Alu 1 112 -5 4 1235 745 263 87 10 chr6 85235824 85236020 -64281017 + ID_B1 SINE B4 6 216 -8 4 1235 315 258 206 0 chr6 85236045 85236142 -64280895 + PB1D10 SINE Alu 1 117 0 4 1235 200 125 25 0 chr6 85237435 85237475 -64279562 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1235 279 295 154 26 chr6 85238894 85239089 -64277948 + RMER15 LTR ERVL 349 568 -7 4 1235 477 90 0 0 chr6 85239361 85239428 -64277609 + (TCC)n Simple_repeat Simple_repeat 2 68 0 4 1235 883 211 28 6 chr6 85239895 85240076 -64276961 - B3A SINE B2 -13 185 1 4 1235 665 292 37 19 chr6 85240083 85240299 -64276738 - ID_B1 SINE B4 -3 221 2 4 1235 258 330 32 11 chr6 85240477 85240572 -64276465 - PB1D10 SINE Alu -6 111 15 4 1235 1424 70 11 11 chr6 85240587 85240776 -64276261 - B2_Mm2 SINE B2 -5 190 2 4 1235 269 230 203 0 chr6 85240838 85240912 -64276125 + PB1D10 SINE Alu 21 109 -8 4 1235 615 292 27 50 chr6 85241217 85241437 -64275600 - B3A SINE B2 0 216 2 4 1235 480 266 235 11 chr6 85241442 85241621 -64275416 - ID_B1 SINE B4 0 224 6 4 1235 567 271 170 22 chr6 85241640 85241870 -64275167 - B4A SINE B4 -21 271 8 4 1235 1122 151 86 14 chr6 85242042 85242251 -64274786 - URR1A DNA MER1_type 0 226 3 4 1235 893 144 20 46 chr6 85242322 85242475 -64274562 + B1_Mur2 SINE Alu 1 149 0 4 1235 454 276 31 0 chr6 85242955 85243082 -64273955 + B1F SINE Alu 18 148 -1 4 1235 587 270 14 14 chr6 85243090 85243229 -64273808 + ID_B1 SINE B4 86 224 0 4 1235 236 376 34 43 chr6 85244308 85244504 -64272533 + MIRb SINE MIR 22 217 -51 4 1235 256 288 0 0 chr6 85244469 85244528 -64272509 - L2c LINE L2 0 3387 3329 4 1235 870 204 91 0 chr6 85244547 85244723 -64272314 + ID_B1 SINE B4 13 204 -20 4 1235 621 277 0 0 chr6 85246277 85246414 -64270623 + B1_Mur3 SINE Alu 12 148 -1 4 1235 582 91 30 0 chr6 85246427 85246526 -64270511 + (GA)n Simple_repeat Simple_repeat 1 102 0 4 1235 776 7 95 0 chr6 85246532 85246680 -64270357 + (GGGAA)n Simple_repeat Simple_repeat 2 163 0 4 1235 1259 79 6 0 chr6 85246680 85246857 -64270180 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 1235 542 257 166 39 chr6 85247175 85247434 -64269603 + B4A SINE B4 1 292 0 4 1235 261 0 0 0 chr6 85247442 85247471 -64269566 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1235 423 158 143 98 chr6 85247565 85247677 -64269360 + PB1D10 SINE Alu 1 117 0 4 1235 371 283 63 0 chr6 85247780 85247888 -64269149 + PB1D7 SINE Alu 2 119 -1 4 1235 1512 49 38 0 chr6 85247984 85248169 -64268868 + B2_Mm2 SINE B2 3 194 -1 4 1235 370 224 23 12 chr6 85248169 85248247 -64268790 + ID_B1 SINE B4 144 222 -2 4 1235 246 279 35 11 chr6 85248249 85248336 -64268701 + GA-rich Low_complexity Low_complexity 2 90 0 4 1235 232 211 31 123 chr6 85248537 85248602 -64268435 + B1_Mur1 SINE Alu 53 111 -38 4 1235 485 165 91 16 chr6 85248676 85248778 -64268259 + B1_Mur2 SINE Alu 9 143 -6 4 1235 310 298 105 47 chr6 85248987 85249177 -64267860 + HAL1 LINE L1 2012 2212 -295 4 1235 1125 245 27 8 chr6 85249860 85250114 -64266923 + B4 SINE B4 11 269 -23 4 1235 360 0 0 0 chr6 85250114 85250154 -64266883 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1235 23 0 0 0 chr6 85250159 85250182 -64266855 + AT_rich Low_complexity Low_complexity 1 23 0 4 1235 361 292 20 62 chr6 85250427 85250573 -64266464 + B1F SINE Alu 2 141 -8 4 1235 633 229 8 0 chr6 85250585 85250707 -64266330 + B1_Mur1 SINE Alu 1 123 -26 4 1235 518 261 27 0 chr6 85250769 85250880 -64266157 + ID_B1 SINE B4 90 203 -21 4 1235 725 33 0 11 chr6 85250894 85250987 -64266050 + (GGAA)n Simple_repeat Simple_repeat 4 95 0 4 1235 437 280 0 36 chr6 85251023 85251134 -64265903 + ID_B1 SINE B4 92 198 -26 4 1235 513 140 63 21 chr6 85251349 85251444 -64265593 - ORR1B1 LTR MaLR 0 394 296 5 1235 764 201 18 36 chr6 85251428 85251593 -64265444 + B3A SINE B2 36 197 -1 5 1235 322 280 0 0 chr6 85251599 85251674 -64265363 + PB1D10 SINE Alu 1 75 -42 5 1235 608 130 0 11 chr6 85251725 85251818 -64265219 + B3 SINE B2 1 92 -124 5 1235 516 211 67 43 chr6 85251923 85252062 -64264975 - B1F SINE Alu -1 148 4 5 1235 404 211 44 35 chr6 85252174 85252287 -64264750 + Lx8 LINE L1 6328 6441 -1032 5 1235 699 264 15 11 chr6 85253341 85253510 -64263527 + ID_B1 SINE B4 82 253 -39 5 1235 21 36 0 0 chr6 85253510 85253538 -64263499 + AT_rich Low_complexity Low_complexity 1 28 0 5 1235 3071 255 103 23 chr6 85253541 85253750 -64263287 + Lx8 LINE L1 6340 6549 -924 5 1235 3186 47 42 0 chr6 85253750 85254134 -64262903 + MTB LTR MaLR 1 400 0 5 1235 3071 255 103 23 chr6 85254134 85254878 -64262159 + Lx8 LINE L1 6550 7337 -136 5 1235 1419 198 129 21 chr6 85254878 85255218 -64261819 + ORR1C1 LTR MaLR 2 378 0 5 1235 3071 255 103 23 chr6 85255218 85255313 -64261724 + Lx8 LINE L1 7338 7471 -2 5 1235 470 184 69 0 chr6 85255331 85255418 -64261619 - B1_Mur4 SINE Alu 0 150 58 5 1235 929 238 163 81 chr6 85255482 85255931 -64261106 + MT2B LTR ERVL 2 601 0 5 1235 229 229 42 0 chr6 85256039 85256087 -64260950 + G-rich Low_complexity Low_complexity 4 53 0 5 1235 331 287 76 45 chr6 85256087 85256244 -64260793 + HAL1-3A_ME LINE L1 2283 2444 -414 5 1235 516 312 24 0 chr6 85256287 85256412 -64260625 + RSINE1 SINE B4 1 128 -37 5 1235 996 267 119 41 chr6 85256670 85257014 -64260023 - MTD LTR MaLR -14 405 35 5 1235 1042 151 141 0 chr6 85257017 85257209 -64259828 - URR1A DNA MER1_type -1 225 7 5 1235 382 235 0 0 chr6 85257556 85257624 -64259413 + B3 SINE B2 10 77 -139 5 1235 249 33 0 0 chr6 85257708 85257738 -64259299 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1235 827 245 100 52 chr6 85257745 85258016 -64259021 - B4A SINE B4 -8 284 1 5 1235 434 269 42 55 chr6 85258047 85258212 -64258825 + RSINE1 SINE B4 3 165 0 5 1235 24 32 0 0 chr6 85258216 85258247 -64258790 + AT_rich Low_complexity Low_complexity 1 31 0 5 1235 338 61 20 0 chr6 85258339 85258388 -64258649 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 5 1235 408 258 41 0 chr6 85258389 85258486 -64258551 - U6 snRNA snRNA -6 101 1 5 1235 260 213 100 23 chr6 85258514 85258535 -64258502 - RCHARR1 DNA MER1_type -78 896 873 5 1235 1069 168 44 15 chr6 85258535 85258740 -64258297 + B3 SINE B2 1 211 -5 5 1235 260 213 100 23 chr6 85258740 85258845 -64258192 - RCHARR1 DNA MER1_type -102 872 760 5 1235 3349 135 21 17 chr6 85258845 85259290 -64257747 + RLTR20A LTR ERVK 2 439 -102 5 1235 906 19 0 0 chr6 85259290 85259398 -64257639 + (TG)n Simple_repeat Simple_repeat 2 109 0 5 1235 3349 135 21 17 chr6 85259398 85259487 -64257550 + RLTR20A LTR ERVK 440 537 -4 5 1235 269 321 0 121 chr6 85259507 85259631 -64257406 + MT2B LTR ERVL 152 260 -341 5 1235 710 217 8 8 chr6 85259540 85259670 -64257367 + B1F2 SINE Alu 17 146 -3 5 1235 879 238 37 19 chr6 85259686 85259900 -64257137 - RCHARR1 DNA MER1_type -240 734 517 5 1235 297 0 0 0 chr6 85260045 85260078 -64256959 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1235 2329 101 25 0 chr6 85260096 85260414 -64256623 - ORR1A3 LTR MaLR 0 326 1 5 1235 809 284 58 9 chr6 85260414 85260638 -64256399 - B4 SINE B4 -56 236 2 5 1235 1310 247 176 12 chr6 85260638 85261063 -64255974 - RCHARR1 DNA MER1_type -477 497 3 5 1235 737 242 193 0 chr6 85261191 85261435 -64255602 - B4A SINE B4 0 292 2 5 1235 21 0 0 0 chr6 85261907 85261928 -64255109 + AT_rich Low_complexity Low_complexity 1 21 0 5 1235 532 258 54 11 chr6 85262239 85262423 -64254614 - L1MC4 LINE L1 -1180 6862 6671 5 1235 527 245 187 47 chr6 85262543 85262714 -64254323 - B3A SINE B2 -3 195 1 5 1235 259 277 136 19 chr6 85262718 85262821 -64254216 - PB1D7 SINE Alu -1 119 5 5 1235 1028 213 21 0 chr6 85262922 85263110 -64253927 + B3 SINE B2 1 192 -24 5 1235 252 0 0 0 chr6 85263116 85263144 -64253893 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1235 246 302 92 20 chr6 85263235 85263333 -64253704 + MT2B LTR ERVL 152 256 -345 5 1235 389 296 39 31 chr6 85263250 85263273 -64253764 + ID_B1 SINE B4 95 224 0 5 1235 467 255 28 0 chr6 85263273 85263379 -64253658 + B1F SINE Alu 41 149 0 5 1235 809 217 0 0 chr6 85263385 85263528 -64253509 + B1_Mur1 SINE Alu 7 149 0 5 1235 296 253 232 0 chr6 85263570 85263665 -64253372 + B1F SINE Alu 20 136 -13 5 1235 243 122 0 0 chr6 85263682 85263731 -64253306 + (A)n Simple_repeat Simple_repeat 1 49 0 5 1235 216 306 14 14 chr6 85264050 85264123 -64252914 + CT-rich Low_complexity Low_complexity 3 75 0 5 1235 256 308 128 18 chr6 85264163 85264272 -64252765 - LTR85a LTR Gypsy? -581 121 1 5 1235 368 232 10 59 chr6 85265078 85265179 -64251858 + MT2B LTR ERVL 165 260 -341 5 1235 665 217 61 15 chr6 85265090 85265221 -64251816 + B1F SINE Alu 11 147 -2 5 1235 27 0 0 0 chr6 85265221 85265248 -64251789 + AT_rich Low_complexity Low_complexity 1 27 0 5 1235 322 250 39 77 chr6 85265954 85265966 -64251071 + ID_B1 SINE B4 123 217 -2 5 1235 492 151 81 11 chr6 85265966 85266053 -64250984 + B1F1 SINE Alu 50 142 -7 5 1235 230 269 75 11 chr6 85266371 85266465 -64250572 + MIRc SINE MIR 118 217 -51 5 1235 249 345 114 32 chr6 85266581 85266704 -64250333 + B3 SINE B2 2 134 -82 5 1235 1185 68 0 7 chr6 85266717 85266865 -64250172 - B1_Mus2 SINE Alu 0 147 1 5 1235 911 222 10 72 chr6 85266912 85267121 -64249916 + B3A SINE B2 1 196 -2 5 1235 23 0 0 0 chr6 85267125 85267148 -64249889 + AT_rich Low_complexity Low_complexity 1 23 0 5 1235 447 283 48 16 chr6 85267313 85267489 -64249548 + L1ME1 LINE L1 5465 5638 -706 5 1235 336 234 0 38 chr6 85267489 85267569 -64249468 + B1_Mur2 SINE Alu 72 148 -1 5 1235 544 282 78 5 chr6 85267572 85267789 -64249248 + L1ME1 LINE L1 5653 5885 -294 5 1235 405 0 0 0 chr6 85267917 85267962 -64249075 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1235 673 253 86 40 chr6 85268015 85268213 -64248824 - B4A SINE B4 -4 288 82 5 1235 940 291 52 19 chr6 85268268 85268538 -64248499 - B4 SINE B4 -6 286 8 5 1235 3159 66 2 5 chr6 85268813 85269210 -64247827 - MTA_Mm LTR MaLR 0 396 1 5 1235 841 145 0 15 chr6 85269793 85269926 -64247111 + B1_Mur4 SINE Alu 19 149 -1 5 1235 1009 217 0 0 chr6 85269951 85270117 -64246920 + B3A SINE B2 1 166 -32 5 1235 366 23 0 0 chr6 85270119 85270162 -64246875 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1235 234 0 0 0 chr6 85271086 85271112 -64245925 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1235 25 0 0 0 chr6 85271224 85271249 -64245788 + AT_rich Low_complexity Low_complexity 1 25 0 5 1235 357 24 0 0 chr6 85271320 85271362 -64245675 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1235 268 210 78 31 chr6 85271368 85271432 -64245605 - ID4_ SINE ID -16 67 1 5 1235 236 192 19 19 chr6 85271486 85271539 -64245498 + L1MC4 LINE L1 6807 6859 -1183 5 1235 478 225 27 7 chr6 85271567 85271677 -64245360 + B3 SINE B2 18 124 -92 5 1235 239 312 0 15 chr6 85272057 85272122 -64244915 + B1_Mur3 SINE Alu 1 64 -85 5 1235 888 115 124 7 chr6 85272129 85272373 -64244664 + RLTR9F LTR ERVK 26 415 0 5 1235 441 233 23 0 chr6 85272373 85272459 -64244578 + B1_Mur1 SINE Alu 62 149 0 5 1235 1028 199 48 5 chr6 85272505 85272712 -64244325 - B3 SINE B2 0 216 1 5 1235 314 273 54 18 chr6 85273700 85273812 -64243225 - LTR65 LTR ERV1 -13 656 541 5 1235 396 291 39 0 chr6 85273870 85273997 -64243040 - LTR65 LTR ERV1 -212 457 326 5 1235 300 300 0 48 chr6 85274067 85274151 -64242886 + ID4 SINE ID 1 80 -3 5 1235 287 49 0 24 chr6 85274152 85274194 -64242843 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 5 1235 672 226 109 16 chr6 85274315 85274499 -64242538 - B3 SINE B2 -15 201 1 5 1235 461 340 45 35 chr6 85274612 85274813 -64242224 + B4A SINE B4 86 288 -4 5 1235 227 266 35 81 chr6 85274776 85274862 -64242175 + B3 SINE B2 122 203 -13 5 1235 270 0 0 0 chr6 85274895 85274925 -64242112 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1235 195 247 39 52 chr6 85275596 85275673 -64241364 - MER5B DNA MER1_type -66 112 37 5 1235 852 259 11 11 chr6 85275674 85275865 -64241172 + B3A SINE B2 3 193 -5 5 1235 958 150 7 0 chr6 85276256 85276403 -64240634 + B1_Mur4 SINE Alu 1 148 -2 5 1235 1133 184 18 46 chr6 85276438 85276655 -64240382 + B3 SINE B2 6 216 0 5 1235 1117 253 86 18 chr6 85276835 85277161 -64239876 + Lx8 LINE L1 6976 7323 -150 5 1235 420 271 40 77 chr6 85277161 85277311 -64239726 - B3A SINE B2 -7 209 65 5 1235 1360 95 11 0 chr6 85277393 85277583 -64239454 - B2_Mm1a SINE B2 -1 192 1 5 1235 848 153 45 15 chr6 85277679 85277812 -64239225 - B1_Mur2 SINE Alu -12 137 1 5 1235 232 312 85 15 chr6 85277950 85278080 -64238957 + L1MC5 LINE L1 7366 7504 -457 5 1235 485 329 23 6 chr6 85278104 85278275 -64238762 - L1MC3 LINE L1 -302 7483 7310 5 1235 466 216 58 94 chr6 85278313 85278451 -64238586 + B3A SINE B2 39 171 -27 5 1235 225 94 0 0 chr6 85278499 85278531 -64238506 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 5 1235 433 259 35 26 chr6 85278564 85278679 -64238358 - B3A SINE B2 -24 174 59 5 1235 1124 76 7 0 chr6 85278718 85278863 -64238174 - B1_Mus1 SINE Alu 0 148 3 5 1235 217 135 0 0 chr6 85278880 85278917 -64238120 - B3A SINE B2 -159 39 3 5 1235 231 310 69 0 chr6 85278917 85279004 -64238033 + L1MC5 LINE L1 7728 7820 -62 5 1235 334 216 0 39 chr6 85279077 85279154 -64237883 + B4 SINE B4 215 288 -4 5 1235 223 196 22 0 chr6 85279160 85279206 -64237831 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1235 315 365 32 6 chr6 85279206 85279363 -64237674 + L1MC5 LINE L1 7701 7861 -100 6 1235 395 202 0 128 chr6 85279535 85279660 -64237377 + MT2B LTR ERVL 156 264 -337 6 1235 863 129 22 0 chr6 85279556 85279695 -64237342 + B1_Mur4 SINE Alu 9 150 0 6 1235 919 235 5 5 chr6 85280062 85280246 -64236791 + ID_B1 SINE B4 2 185 -39 6 1235 521 228 198 37 chr6 85280419 85280606 -64236431 + ID_B1 SINE B4 3 219 -5 6 1235 517 191 67 0 chr6 85284030 85284135 -64232902 - B1F SINE Alu -28 121 10 6 1235 307 0 47 0 chr6 85286418 85286461 -64230576 + (CCA)n Simple_repeat Simple_repeat 2 46 0 6 1235 267 335 61 6 chr6 85288565 85288584 -64228453 + L2c LINE L2 3033 3052 -335 6 1235 301 289 93 0 chr6 85288584 85288681 -64228356 + PB1D10 SINE Alu 1 106 -11 6 1235 267 335 61 6 chr6 85288681 85288826 -64228211 + L2c LINE L2 3053 3205 -182 6 1235 189 0 0 0 chr6 85289829 85289850 -64227187 + (TCTCC)n Simple_repeat Simple_repeat 3 23 0 6 1235 333 118 0 0 chr6 85290742 85290793 -64226244 + (TCC)n Simple_repeat Simple_repeat 3 53 0 6 1235 200 176 0 0 chr6 85291194 85291228 -64225809 + CT-rich Low_complexity Low_complexity 3 36 0 6 1235 522 275 192 0 chr6 85293425 85293592 -64223445 + ID_B1 SINE B4 1 199 -25 6 1235 351 0 0 0 chr6 85293601 85293640 -64223397 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1235 633 163 68 23 chr6 85293641 85293773 -64223264 + B1F2 SINE Alu 2 139 -10 6 1235 303 49 0 0 chr6 85294367 85294408 -64222629 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1235 243 209 15 0 chr6 85294825 85294892 -64222145 + L1P5 LINE L1 5837 5904 -252 6 1235 397 254 104 9 chr6 85294904 85295019 -64222018 + RSINE1 SINE B4 7 132 -33 6 1235 501 268 0 0 chr6 85295336 85295448 -64221589 - PB1D9 SINE Alu -6 114 3 6 1235 208 135 0 0 chr6 85299044 85299081 -64217956 + (CCCCAG)n Simple_repeat Simple_repeat 2 38 0 6 1235 330 190 0 141 chr6 85299782 85299874 -64217163 - PB1D10 SINE Alu -34 83 5 6 1235 718 279 125 14 chr6 85299881 85300226 -64216811 + L1MC1 LINE L1 5589 5971 -362 6 1235 371 280 18 18 chr6 85300241 85300350 -64216687 + PB1D7 SINE Alu 12 120 0 6 1235 423 281 38 76 chr6 85300360 85300545 -64216492 + L1MC1 LINE L1 5961 6138 -206 6 1235 380 255 0 38 chr6 85300557 85300663 -64216374 + B1F1 SINE Alu 48 149 0 6 1235 241 235 73 99 chr6 85300693 85300844 -64216193 + L1MC1 LINE L1 6179 6325 -19 6 1235 1233 34 0 7 chr6 85300849 85300998 -64216039 + B1_Mus1 SINE Alu 1 148 0 6 1235 319 296 144 0 chr6 85301017 85301142 -64215895 + B3 SINE B2 1 143 -73 6 1235 759 242 193 0 chr6 85301571 85301815 -64215222 + B4A SINE B4 2 292 0 6 1235 1164 251 126 11 chr6 85301943 85302325 -64214712 + RCHARR1 DNA MER1_type 3 428 -546 6 1235 817 276 102 8 chr6 85302367 85302591 -64214446 + B4 SINE B4 2 236 -56 6 1235 2029 114 36 65 chr6 85302591 85302928 -64214109 + ORR1A2 LTR MaLR 1 327 0 6 1235 817 276 102 8 chr6 85302928 85302969 -64214068 + B4 SINE B4 237 291 -1 6 1235 231 191 0 0 chr6 85302972 85303040 -64213997 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1235 303 151 0 0 chr6 85303040 85303093 -64213944 + HAL1-3A_ME LINE L1 1976 2028 -830 6 1235 255 122 0 0 chr6 85303093 85303142 -64213895 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1235 837 243 39 5 chr6 85303295 85303502 -64213535 + RCHARR1 DNA MER1_type 521 734 -240 6 1235 439 196 0 35 chr6 85303518 85303643 -64213394 - B1F SINE Alu -3 146 52 6 1235 235 204 65 84 chr6 85303555 85303662 -64213375 - RLTR25A LTR ERVK -493 610 506 6 1235 388 234 81 25 chr6 85303678 85303819 -64213218 + RCHARR1 DNA MER1_type 725 874 -100 6 1235 1030 185 49 15 chr6 85303819 85304022 -64213015 - B3 SINE B2 -5 211 2 6 1235 388 234 81 25 chr6 85304022 85304077 -64212960 + RCHARR1 DNA MER1_type 875 932 -42 6 1235 333 247 75 0 chr6 85304072 85304165 -64212872 + U6 snRNA snRNA 2 101 -6 6 1235 1251 130 11 0 chr6 85304180 85304357 -64212680 + B2_Mm1t SINE B2 1 179 -14 6 1235 320 126 333 29 chr6 85304422 85304536 -64212501 + B2_Mm2 SINE B2 47 193 -2 6 1235 23 33 0 0 chr6 85304587 85304617 -64212420 + AT_rich Low_complexity Low_complexity 1 30 0 6 1235 30 0 0 0 chr6 85304628 85304658 -64212379 + AT_rich Low_complexity Low_complexity 1 30 0 6 1235 475 278 49 0 chr6 85304683 85304827 -64212210 - RSINE1 SINE B4 -12 153 3 6 1235 573 250 40 40 chr6 85304858 85305033 -64212004 + B4A SINE B4 1 175 -117 6 1235 782 175 6 30 chr6 85305035 85305200 -64211837 + B3 SINE B2 56 216 0 6 1235 298 235 78 48 chr6 85305236 85305339 -64211698 + PB1D10 SINE Alu 6 111 -6 6 1235 493 308 0 0 chr6 85305368 85305485 -64211552 + B1F1 SINE Alu 10 126 -23 6 1235 557 28 14 0 chr6 85305499 85305570 -64211467 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 1235 1132 88 7 0 chr6 85305614 85305761 -64211276 + B1_Mus1 SINE Alu 1 148 0 6 1235 410 344 88 0 chr6 85305772 85305964 -64211073 + HAL1 LINE L1 1243 1451 -1056 6 1235 431 242 0 10 chr6 85306269 85306365 -64210672 + PB1D10 SINE Alu 1 95 -22 6 1235 422 232 21 0 chr6 85306469 85306564 -64210473 - PB1D10 SINE Alu -9 108 12 6 1235 278 319 21 0 chr6 85306482 85306576 -64210461 - ID_B1 SINE B4 -48 176 81 6 1235 246 155 0 33 chr6 85306794 85306854 -64210183 + HAL1b LINE L1 1937 1994 -15 6 1235 1187 264 40 42 chr6 85307083 85307463 -64209574 + MTE2b LTR MaLR 1 379 0 6 1235 237 227 61 0 chr6 85308579 85308645 -64208392 - PB1D9 SINE Alu -6 114 45 6 1235 314 295 114 7 chr6 85308610 85308750 -64208287 - B4 SINE B4 -125 167 13 6 1235 781 272 49 5 chr6 85308784 85308987 -64208050 - B3 SINE B2 -4 212 1 6 1235 290 296 0 0 chr6 85308997 85309068 -64207969 - B1F1 SINE Alu -9 140 70 6 1235 1625 42 0 10 chr6 85309285 85309479 -64207558 + B2_Mm1a SINE B2 2 193 0 6 1235 623 286 52 90 chr6 85309657 85309945 -64207092 + B4 SINE B4 2 278 -14 6 1235 309 250 144 40 chr6 85310012 85310137 -64206900 - MIRb SINE MIR -107 161 24 6 1235 858 215 161 0 chr6 85310653 85310839 -64206198 - ID_B1 SINE B4 -8 216 1 6 1235 201 274 0 0 chr6 85311259 85311321 -64205716 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1235 231 211 70 0 chr6 85311499 85311556 -64205481 + Charlie4a DNA MER1_type 436 496 -12 6 1235 524 193 119 0 chr6 85311919 85312028 -64205009 + B1_Mur2 SINE Alu 3 124 -25 6 1235 360 272 61 81 chr6 85312156 85312304 -64204733 + RMER15 LTR ERVL 341 485 -90 6 1235 1132 88 0 20 chr6 85313015 85313166 -64203871 + B1_Mus1 SINE Alu 1 148 0 6 1235 219 170 0 21 chr6 85313499 85313547 -64203490 + T-rich Low_complexity Low_complexity 3 49 0 6 1235 403 76 0 96 chr6 85313551 85313624 -64203413 - B1_Mus2 SINE Alu -2 145 80 6 1235 887 261 0 0 chr6 85313687 85313867 -64203170 - B3A SINE B2 -18 180 1 6 1235 561 205 17 8 chr6 85313871 85313989 -64203048 - PB1D7 SINE Alu -1 119 1 6 1235 722 261 12 12 chr6 85314271 85314434 -64202603 + RSINE1 SINE B4 3 165 0 6 1235 468 254 78 16 chr6 85314471 85314599 -64202438 + B1_Mur3 SINE Alu 13 148 -1 6 1235 449 297 101 7 chr6 85314617 85314756 -64202281 + RSINE1 SINE B4 1 152 -13 6 1235 434 380 0 7 chr6 85314819 85314962 -64202075 + ID_B1 SINE B4 81 222 -2 6 1235 379 247 0 0 chr6 85315565 85315654 -64201383 + PB1 SINE Alu 39 127 0 6 1235 283 246 264 0 chr6 85315846 85315927 -64201110 - ID_B1 SINE B4 0 224 115 6 1235 342 0 0 0 chr6 85315927 85315965 -64201072 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1235 302 176 604 0 chr6 85315965 85316041 -64200996 - ID_B1 SINE B4 -110 114 1 6 1235 232 293 17 0 chr6 85316087 85316145 -64200892 - tRNA-Ala-GCA tRNA tRNA -13 62 4 6 1235 322 284 174 38 chr6 85316785 85317000 -64200037 + MIRc SINE MIR 6 219 -49 6 1235 240 35 0 0 chr6 85318200 85318229 -64198808 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 6 1235 194 374 122 0 chr6 85318283 85318398 -64198639 + MIR SINE MIR 51 179 -83 6 1235 219 271 17 0 chr6 85319958 85320017 -64197020 + ID_B1 SINE B4 94 153 -71 6 1235 252 0 0 0 chr6 85320101 85320129 -64196908 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1235 252 292 0 27 chr6 85320849 85320923 -64196114 + ID4_ SINE ID 2 73 -10 6 1235 332 174 59 39 chr6 85321595 85321697 -64195340 - MIRb SINE MIR -64 204 101 6 1235 439 241 27 36 chr6 85323094 85323206 -64193831 - PB1D9 SINE Alu -1 119 9 6 1235 738 206 0 14 chr6 85323288 85323436 -64193601 + B1_Mus1 SINE Alu 3 148 0 6 1235 206 182 0 83 chr6 85324646 85324730 -64192307 + (CCCCG)n Simple_repeat Simple_repeat 3 79 0 6 1235 406 198 190 0 chr6 85325385 85325501 -64191536 - B1_Mur2 SINE Alu 0 149 12 6 1235 278 346 24 112 chr6 85325426 85325522 -64191515 + MT2B2 LTR ERVL 71 148 -436 6 1235 627 200 0 50 chr6 85325522 85325643 -64191394 + B1_Mur1 SINE Alu 2 116 -33 6 1235 392 292 27 68 chr6 85325523 85325670 -64191367 + ID_B1 SINE B4 84 224 0 6 1235 253 205 212 24 chr6 85325958 85325974 -64191063 + ID_B1 SINE B4 76 176 -48 6 1235 292 145 304 0 chr6 85325974 85326043 -64190994 + B1F1 SINE Alu 9 98 -51 6 1235 935 173 0 20 chr6 85326092 85326245 -64190792 - B1_Mur4 SINE Alu 0 150 1 6 1235 583 225 26 66 chr6 85326295 85326447 -64190590 + RSINE1 SINE B4 20 165 0 6 1235 210 37 0 0 chr6 85326538 85326565 -64190472 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 6 1235 546 205 0 25 chr6 85326699 85326819 -64190218 - PB1D9 SINE Alu -2 118 2 6 1235 472 269 61 8 chr6 85326834 85326965 -64190072 - ID_B1 SINE B4 -8 216 79 7 1235 662 254 35 23 chr6 85327674 85327847 -64189190 + ID_B1 SINE B4 50 224 0 7 1236 245 365 24 71 chr6 85328012 85328180 -64188857 - MIR SINE MIR -62 200 41 7 1236 799 195 30 0 chr6 85328281 85328450 -64188587 - ORR1C1 LTR MaLR -1 377 204 7 1236 417 54 0 0 chr6 85328506 85328562 -64188475 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1236 331 340 102 4 chr6 85329038 85329283 -64187754 + L1MD3 LINE L1 6792 7060 -935 7 1236 251 200 62 0 chr6 85329383 85329448 -64187589 - PB1D10 SINE Alu -1 116 48 7 1236 610 144 24 59 chr6 85329489 85329591 -64187446 + T-rich Low_complexity Low_complexity 66 165 0 7 1236 213 39 0 0 chr6 85329591 85329617 -64187420 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 7 1236 1184 43 14 0 chr6 85329618 85329758 -64187279 - B1_Mus1 SINE Alu -6 142 1 7 1236 610 144 24 59 chr6 85329758 85329823 -64187214 + T-rich Low_complexity Low_complexity 2 65 0 7 1236 349 91 0 0 chr6 85329823 85329878 -64187159 - B1_Mur4 SINE Alu 0 150 96 7 1236 1989 131 24 120 chr6 85329870 85330083 -64186954 - RLTR19A LTR ERVK -119 377 192 7 1236 1419 94 16 0 chr6 85330083 85330275 -64186762 - B2_Mm2 SINE B2 0 195 1 7 1236 1989 131 24 120 chr6 85330275 85330478 -64186559 - RLTR19A LTR ERVK -305 191 1 7 1236 558 141 22 0 chr6 85330478 85330568 -64186469 - B1_Mur4 SINE Alu -55 95 4 7 1236 333 231 0 128 chr6 85330478 85330587 -64186450 - MT2B LTR ERVL -354 247 153 7 1236 1897 163 37 8 chr6 85330794 85331171 -64185866 - RMER10B LTR ERVL -9 389 2 7 1236 368 273 118 0 chr6 85331463 85331573 -64185464 - ID_B1 SINE B4 -27 197 75 7 1236 322 234 67 75 chr6 85331591 85331725 -64185312 - B1F SINE Alu -16 133 1 7 1236 868 270 19 5 chr6 85332073 85332285 -64184752 + ID_B1 SINE B4 1 215 -9 7 1236 1584 227 72 80 chr6 85332346 85332858 -64184179 + RLTR18B LTR ERVK 1 508 -4 7 1236 305 284 0 0 chr6 85332861 85332941 -64184096 + ID4_ SINE ID 13 92 -60 7 1236 440 196 19 9 chr6 85333300 85333408 -64183629 + Lx9 LINE L1 7533 7641 -3 7 1236 1217 48 0 0 chr6 85333459 85333605 -64183432 + B1_Mm SINE Alu 2 147 0 7 1236 180 0 0 0 chr6 85333770 85333790 -64183247 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 7 1236 492 278 9 0 chr6 85333795 85333903 -64183134 - PB1D10 SINE Alu -8 109 1 7 1236 3498 130 94 30 chr6 85333929 85334516 -64182521 - RMER6A LTR ERVK 0 756 137 7 1236 4854 15 2 0 chr6 85334516 85335058 -64181979 + L1Md_A LINE L1 6040 6582 0 7 1236 3498 130 94 30 chr6 85335058 85335129 -64181908 - RMER6A LTR ERVK -620 136 56 7 1236 232 250 0 51 chr6 85335197 85335256 -64181781 + 4.5SRNA scRNA scRNA 29 84 -10 7 1236 626 167 9 9 chr6 85335206 85335297 -64181740 + B1_Mur4 SINE Alu 41 138 -12 7 1236 500 45 0 15 chr6 85335303 85335371 -64181666 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 7 1236 626 167 9 9 chr6 85335371 85335382 -64181655 + B1_Mur4 SINE Alu 139 149 -1 7 1236 377 287 50 35 chr6 85335382 85335505 -64181532 - MLT1D LTR MaLR -52 453 317 7 1236 625 262 7 33 chr6 85335627 85335777 -64181260 - RSINE1 SINE B4 -17 148 3 7 1236 729 290 58 18 chr6 85335797 85336022 -64181015 + MTE2a LTR MaLR 3 236 -143 7 1236 2138 149 49 8 chr6 85336022 85336387 -64180650 - MTB_Mm LTR MaLR 0 407 28 7 1236 3360 139 94 17 chr6 85336398 85336992 -64180045 + RLTR26 LTR ERVK 1 640 -2 7 1236 610 225 35 7 chr6 85336998 85337141 -64179896 + MTE2a LTR MaLR 232 378 -1 7 1236 665 278 27 0 chr6 85337220 85337407 -64179630 + B3 SINE B2 24 215 -1 7 1236 237 65 0 0 chr6 85337412 85337443 -64179594 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1236 1052 76 13 46 chr6 85337475 85337627 -64179410 + B1_Mus1 SINE Alu 2 148 0 7 1236 323 287 95 27 chr6 85337747 85337969 -64179068 + L1MC4 LINE L1 7492 7728 -314 7 1236 323 280 65 111 chr6 85338176 85338393 -64178644 + RMER15 LTR ERVL 346 552 -23 7 1236 333 0 0 0 chr6 85338567 85338604 -64178433 + (CCCCCA)n Simple_repeat Simple_repeat 6 42 0 7 1236 1434 70 27 0 chr6 85338896 85339083 -64177954 - B2_Mm1a SINE B2 0 193 2 7 1236 22 56 0 0 chr6 85339150 85339186 -64177851 + AT_rich Low_complexity Low_complexity 1 36 0 7 1236 682 266 0 7 chr6 85339186 85339330 -64177707 + B1_Mur1 SINE Alu 1 143 -6 7 1236 290 138 17 0 chr6 85339330 85339388 -64177649 + GA-rich Low_complexity Low_complexity 2 60 0 7 1236 386 291 44 17 chr6 85339737 85339943 -64177094 - L1MEe LINE L1 -4557 1451 1228 7 1236 421 248 10 0 chr6 85340086 85340167 -64176870 - ID_B1 SINE B4 -1 223 143 7 1236 1277 69 5 0 chr6 85340167 85340370 -64176667 + (TTC)n Simple_repeat Simple_repeat 1 203 0 7 1236 421 248 10 0 chr6 85340370 85340388 -64176649 - ID_B1 SINE B4 -82 142 124 7 1236 418 196 175 10 chr6 85340430 85340533 -64176504 - PB1D9 SINE Alu 0 120 1 7 1236 629 310 13 0 chr6 85340533 85340688 -64176349 - ID_B1 SINE B4 -67 157 1 7 1236 260 276 183 33 chr6 85340733 85340853 -64176184 + B1F1 SINE Alu 8 145 -4 7 1236 369 0 0 0 chr6 85340979 85341020 -64176017 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1236 801 149 48 34 chr6 85341060 85341206 -64175831 - B1_Mus1 SINE Alu 0 148 1 7 1236 459 259 12 161 chr6 85341270 85341431 -64175606 - B1F2 SINE Alu -1 148 12 7 1236 459 194 194 0 chr6 85341458 85341561 -64175476 - ID_B1 SINE B4 -1 223 101 7 1236 189 0 0 0 chr6 85341589 85341610 -64175427 + (CTG)n Simple_repeat Simple_repeat 2 22 0 7 1236 207 0 0 0 chr6 85341612 85341635 -64175402 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1236 1221 34 0 7 chr6 85341635 85341782 -64175255 - B1_Mus1 SINE Alu 0 148 3 7 1236 612 0 0 0 chr6 85341782 85341850 -64175187 + (TCC)n Simple_repeat Simple_repeat 3 70 0 7 1236 222 189 12 119 chr6 85341852 85341936 -64175101 - B1_Mm SINE Alu -2 145 71 7 1236 235 211 143 82 chr6 85342322 85342420 -64174617 + RSINE1 SINE B4 11 114 -51 7 1236 1216 146 16 0 chr6 85342620 85342805 -64174232 - B2_Mm2 SINE B2 -7 188 1 7 1236 279 0 0 0 chr6 85342818 85342849 -64174188 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1236 954 144 102 17 chr6 85342849 85343025 -64174012 - URR1A DNA MER1_type -35 191 1 7 1236 343 87 0 0 chr6 85343027 85343073 -64173964 - B1_Mur2 SINE Alu -55 94 49 7 1236 374 254 128 26 chr6 85343265 85343280 -64173757 - ID_B1 SINE B4 -7 217 89 7 1236 405 267 49 10 chr6 85343280 85343382 -64173655 - B1F1 SINE Alu -36 113 8 7 1236 599 242 75 44 chr6 85343500 85343660 -64173377 + RSINE1 SINE B4 1 165 0 7 1236 779 237 129 0 chr6 85343740 85343934 -64173103 + ID_B1 SINE B4 2 220 -4 7 1236 674 177 68 23 chr6 85343944 85344077 -64172960 + B1_Mur4 SINE Alu 1 139 -11 7 1236 291 254 120 53 chr6 85344100 85344233 -64172804 + B3A SINE B2 2 143 -55 7 1236 240 217 70 28 chr6 85344201 85344272 -64172765 - B4A SINE B4 -137 155 82 7 1236 528 216 52 89 chr6 85344605 85344818 -64172219 - RLTR14 LTR ERV1 0 382 178 7 1236 216 0 0 0 chr6 85344848 85344872 -64172165 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1236 1520 40 0 0 chr6 85344924 85345098 -64171939 - B2_Mm1a SINE B2 -19 174 1 7 1236 1019 96 0 0 chr6 85345098 85345233 -64171804 + B1_Mus2 SINE Alu 13 147 0 7 1236 401 267 47 94 chr6 85345099 85345248 -64171789 + B4A SINE B4 99 240 -52 7 1236 190 136 45 0 chr6 85345250 85345294 -64171743 + A-rich Low_complexity Low_complexity 5 50 0 7 1236 886 159 61 6 chr6 85345483 85345648 -64171389 - B3 SINE B2 -15 201 28 7 1236 1166 63 7 0 chr6 85345686 85345828 -64171209 + B1_Mm SINE Alu 5 147 0 7 1236 1545 62 0 0 chr6 85346597 85346789 -64170248 - B2_Mm1a SINE B2 0 193 2 7 1236 325 315 54 34 chr6 85346821 85346969 -64170068 - MIR SINE MIR -97 165 15 7 1236 206 194 58 29 chr6 85347252 85347321 -64169716 + (CCCA)n Simple_repeat Simple_repeat 1 71 0 7 1236 1158 53 0 0 chr6 85347457 85347590 -64169447 + B1_Mus1 SINE Alu 2 134 -14 7 1236 861 10 0 0 chr6 85347594 85347692 -64169345 + (GGAGA)n Simple_repeat Simple_repeat 2 99 0 7 1236 450 298 0 64 chr6 85347692 85347818 -64169219 - MTE2a LTR MaLR -222 157 39 7 1236 1248 191 0 9 chr6 85347818 85348045 -64168992 - URR1B DNA MER1_type 0 225 1 7 1236 963 179 96 15 chr6 85348203 85348402 -64168635 + B3 SINE B2 2 216 0 7 1236 253 305 0 0 chr6 85348433 85348492 -64168545 + ID_B1 SINE B4 78 136 -88 7 1236 334 135 247 82 chr6 85348444 85348541 -64168496 + PB1D7 SINE Alu 8 120 0 7 1236 815 226 59 15 chr6 85348710 85348912 -64168125 - B3 SINE B2 0 216 6 7 1236 360 0 0 0 chr6 85349050 85349090 -64167947 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1236 234 209 104 0 chr6 85349138 85349205 -64167832 - B4 SINE B4 -217 75 2 7 1236 312 158 0 0 chr6 85349274 85349350 -64167687 + T-rich Low_complexity Low_complexity 1 76 0 7 1236 614 252 0 8 chr6 85349351 85349483 -64167554 - ID_B1 SINE B4 -2 222 92 7 1236 247 232 0 42 chr6 85349488 85349560 -64167477 - L1M5 LINE L1 -331 5833 5765 7 1236 346 266 13 0 chr6 85350354 85350433 -64166604 + B4 SINE B4 2 81 -211 7 1236 827 174 7 7 chr6 85350449 85350588 -64166449 + B1_Mur1 SINE Alu 3 141 -8 7 1236 568 235 43 0 chr6 85350599 85350714 -64166323 + B3 SINE B2 2 121 -95 7 1236 383 92 15 0 chr6 85350724 85350789 -64166248 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1236 764 149 111 7 chr6 85350819 85350954 -64166083 + B1_Mur2 SINE Alu 1 149 0 8 1236 1092 37 0 7 chr6 85350972 85351107 -64165930 + B2_Mm2 SINE B2 2 135 -60 8 1236 231 188 0 0 chr6 85351120 85351168 -64165869 + GA-rich Low_complexity Low_complexity 2 49 0 8 1236 981 238 20 32 chr6 85351311 85351563 -64165474 - B4A SINE B4 0 292 44 8 1236 450 297 0 78 chr6 85351584 85351712 -64165325 - B1_Mur3 SINE Alu -30 119 2 8 1236 1908 100 125 24 chr6 85351738 85352035 -64165002 - ORR1A2 LTR MaLR 0 327 1 8 1236 1385 66 43 11 chr6 85352108 85352292 -64164745 + B2_Mm2 SINE B2 1 190 -5 8 1236 853 142 37 0 chr6 85352389 85352523 -64164514 - B1_Mur1 SINE Alu 0 149 11 8 1236 463 31 15 15 chr6 85352979 85353045 -64163992 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1236 373 289 60 17 chr6 85353706 85353822 -64163215 - ID_B1 SINE B4 -25 199 79 8 1236 225 307 8 95 chr6 85353711 85353837 -64163200 + MLT-int LTR MaLR 753 867 -868 8 1236 875 192 0 0 chr6 85353851 85353997 -64163040 + B1_Mus2 SINE Alu 1 146 -1 8 1236 565 119 0 19 chr6 85353997 85354100 -64162937 + (GAAA)n Simple_repeat Simple_repeat 1 101 0 8 1236 197 132 26 0 chr6 85354205 85354243 -64162794 + GA-rich Low_complexity Low_complexity 1 39 0 8 1236 188 0 74 0 chr6 85354285 85354312 -64162725 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1236 255 383 35 9 chr6 85354746 85354862 -64162175 + MER91A DNA Tip100 23 141 -55 8 1236 541 252 57 14 chr6 85355064 85355205 -64161832 - ID_B1 SINE B4 0 224 78 8 1236 258 303 62 0 chr6 85355250 85355335 -64161702 - B1F2 SINE Alu -16 104 6 8 1236 752 191 87 0 chr6 85356100 85356226 -64160811 + B1_Mur3 SINE Alu 2 138 -11 8 1236 4856 152 16 45 chr6 85356246 85357162 -64159875 + Lx4B LINE L1 6144 7033 -25 8 1236 447 19 0 0 chr6 85357162 85357214 -64159823 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 8 1236 493 246 65 8 chr6 85359643 85359766 -64157271 + ID_B1 SINE B4 87 216 -8 8 1236 211 125 20 40 chr6 85359770 85359820 -64157217 + GA-rich Low_complexity Low_complexity 1 49 0 8 1236 230 236 12 111 chr6 85359827 85359908 -64157129 - L2 LINE L2 -2798 621 549 8 1236 216 315 85 21 chr6 85361077 85361171 -64155866 - B3A SINE B2 -26 172 73 8 1236 195 42 0 0 chr6 85361388 85361412 -64155625 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1236 1205 41 0 33 chr6 85361417 85361569 -64155468 - B1_Mm SINE Alu 0 147 1 8 1236 1015 249 5 5 chr6 85361677 85361883 -64155154 + B3 SINE B2 1 206 -10 8 1236 246 332 56 52 chr6 85361920 85362132 -64154905 - MLT1G1 LTR MaLR -281 298 41 8 1236 315 254 113 147 chr6 85362137 85362200 -64154837 + ID_B1 SINE B4 1 164 -60 8 1236 555 204 2 163 chr6 85362200 85362289 -64154748 + B1_Mur1 SINE Alu 2 85 -64 8 1236 1145 52 0 0 chr6 85362289 85362424 -64154613 + B1_Mus2 SINE Alu 4 138 -9 8 1236 221 0 0 33 chr6 85362424 85362454 -64154583 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1236 555 194 0 168 chr6 85362454 85362536 -64154501 + B1_Mur1 SINE Alu 86 148 -1 8 1236 315 274 112 146 chr6 85362536 85362571 -64154466 + ID_B1 SINE B4 165 289 -3 8 1236 393 179 61 40 chr6 85363319 85363418 -64153619 + B1_Mur1 SINE Alu 49 149 0 8 1236 489 165 67 19 chr6 85363428 85363533 -64153504 + PB1D10 SINE Alu 5 114 -3 8 1236 259 250 13 38 chr6 85363761 85363840 -64153197 - B3A SINE B2 -121 77 1 8 1236 465 66 0 0 chr6 85363845 85363906 -64153131 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1236 726 173 70 63 chr6 85364040 85364182 -64152855 - B1_Mur1 SINE Alu -1 148 6 8 1236 391 220 71 63 chr6 85364075 85364201 -64152836 - MT2B LTR ERVL -323 278 152 8 1236 854 234 0 6 chr6 85364229 85364392 -64152645 - RSINE1 SINE B4 0 165 4 8 1236 368 356 22 29 chr6 85364399 85364535 -64152502 - ID_B1 SINE B4 -85 139 5 8 1236 661 244 167 0 chr6 85364605 85364785 -64152252 + ID_B1 SINE B4 1 210 -14 8 1236 409 238 208 9 chr6 85365192 85365298 -64151739 + ID_B1 SINE B4 73 199 -25 8 1236 343 312 26 26 chr6 85365472 85365587 -64151450 + PB1 SINE Alu 11 125 -2 8 1236 377 95 16 0 chr6 85366160 85366223 -64150814 + (TC)n Simple_repeat Simple_repeat 2 65 0 8 1236 246 333 154 0 chr6 85366729 85366807 -64150230 - PB1D10 SINE Alu -15 102 13 8 1236 830 272 67 0 chr6 85366833 85367028 -64150009 + B3 SINE B2 1 208 -8 8 1236 467 33 16 0 chr6 85367052 85367113 -64149924 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1236 717 224 0 36 chr6 85367113 85367252 -64149785 - B1_Mur2 SINE Alu -14 135 2 8 1236 674 221 57 7 chr6 85367269 85367410 -64149627 - B1_Mur2 SINE Alu 0 149 2 8 1236 240 302 156 85 chr6 85367450 85367477 -64149560 - B3 SINE B2 -1 215 3 8 1236 704 273 0 64 chr6 85367477 85367649 -64149388 - RSINE1 SINE B4 -1 164 4 8 1236 744 258 10 93 chr6 85367660 85367865 -64149172 - ID_B1 SINE B4 -22 202 15 8 1236 257 51 26 0 chr6 85367872 85367911 -64149126 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 8 1236 575 264 54 0 chr6 85367924 85368053 -64148984 - ID_B1 SINE B4 -10 214 79 8 1236 355 383 67 25 chr6 85368108 85368392 -64148645 + L1MC LINE L1 5529 5824 -2058 8 1236 296 269 53 21 chr6 85368408 85368503 -64148534 + PB1D10 SINE Alu 14 111 -6 8 1236 689 164 0 33 chr6 85368515 85368635 -64148402 + PB1D9 SINE Alu 3 118 -2 8 1236 284 200 231 0 chr6 85369018 85369083 -64147954 - ID2 SINE ID 0 83 4 8 1236 245 284 45 0 chr6 85369198 85369265 -64147772 + ID4 SINE ID 5 74 -9 8 1236 907 221 51 0 chr6 85369278 85369473 -64147564 + ID_B1 SINE B4 20 224 0 8 1236 1544 56 0 0 chr6 85369500 85369680 -64147357 + B2_Mm1a SINE B2 2 181 -12 8 1236 492 48 0 0 chr6 85369680 85369743 -64147294 + (GAAAA)n Simple_repeat Simple_repeat 2 64 0 8 1236 1115 62 21 0 chr6 85369744 85369888 -64147149 + B1_Mus1 SINE Alu 2 148 0 8 1236 339 179 0 0 chr6 85369888 85369955 -64147082 + A-rich Low_complexity Low_complexity 1 67 0 8 1236 1050 233 5 5 chr6 85370046 85370262 -64146775 - ID_B1 SINE B4 -4 220 5 8 1236 335 23 0 22 chr6 85370310 85370355 -64146682 + (TTG)n Simple_repeat Simple_repeat 2 45 0 8 1236 1095 66 15 0 chr6 85370355 85370492 -64146545 - B1_Mus1 SINE Alu -8 140 2 8 1236 737 233 236 115 chr6 85370498 85370794 -64146243 + MTD LTR MaLR 7 338 -41 8 1236 451 173 0 13 chr6 85371202 85371278 -64145759 - B1_Mur3 SINE Alu -73 76 2 8 1236 242 246 0 16 chr6 85371878 85371940 -64145097 + CT-rich Low_complexity Low_complexity 4 64 0 8 1236 279 0 0 0 chr6 85371942 85371973 -64145064 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1236 303 236 103 0 chr6 85371999 85372079 -64144958 - B4 SINE B4 -11 281 201 8 1236 288 143 0 0 chr6 85372080 85372136 -64144901 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1236 483 288 22 81 chr6 85372136 85372321 -64144716 - B4A SINE B4 -118 174 1 8 1236 236 53 26 0 chr6 85372338 85372376 -64144661 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1236 778 172 37 0 chr6 85372393 85372527 -64144510 - B1_Mur1 SINE Alu 0 149 11 8 1236 232 321 51 68 chr6 85372497 85372570 -64144467 - B3 SINE B2 -100 116 45 8 1236 1148 68 0 33 chr6 85372570 85372722 -64144315 + B1_Mm SINE Alu 1 147 0 8 1236 232 321 51 68 chr6 85372722 85372765 -64144272 - B3 SINE B2 -172 44 2 8 1236 293 154 58 0 chr6 85372769 85372821 -64144216 - PB1D7 SINE Alu -1 119 65 8 1236 590 288 0 0 chr6 85372775 85372907 -64144130 - ID_B1 SINE B4 -7 217 86 8 1236 296 306 20 20 chr6 85373354 85373399 -64143638 + B4A SINE B4 41 85 -207 8 1236 391 259 125 0 chr6 85373399 85373511 -64143526 + B1F SINE Alu 1 126 -23 8 1236 226 296 23 143 chr6 85373413 85373630 -64143407 + MT2B LTR ERVL 67 257 -344 8 1236 666 197 53 8 chr6 85373535 85373668 -64143369 + B1_Mur2 SINE Alu 6 144 -5 8 1236 379 231 0 11 chr6 85374431 85374523 -64142514 - Lx8 LINE L1 -380 7093 7003 8 1236 489 252 23 16 chr6 85374729 85374858 -64142179 - B4A SINE B4 -44 248 119 8 1236 282 56 0 0 chr6 85374859 85374895 -64142142 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 8 1236 1056 63 21 14 chr6 85374898 85375042 -64141995 - B2_Mm2 SINE B2 -39 156 12 8 1236 225 0 0 0 chr6 85375063 85375088 -64141949 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1236 197 250 81 23 chr6 85375120 85375206 -64141831 + L2b LINE L2 2263 2353 -1066 8 1236 265 325 12 0 chr6 85375810 85375893 -64141144 + (TG)n Simple_repeat Simple_repeat 1 84 0 8 1236 800 197 22 0 chr6 85375934 85376108 -64140929 + B3 SINE B2 9 195 -3 8 1236 189 0 0 0 chr6 85376111 85376132 -64140905 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1236 290 191 15 60 chr6 85376136 85376203 -64140834 - ID SINE ID -160 64 1 8 1236 1148 60 0 0 chr6 85376270 85376403 -64140634 + B1_Mm SINE Alu 2 134 -13 8 1236 211 180 38 57 chr6 85376577 85376590 -64140447 - ID SINE ID -170 54 3 8 1236 216 150 25 0 chr6 85376590 85376630 -64140407 - ID4 SINE ID -40 43 3 8 1236 251 233 258 23 chr6 85376644 85376776 -64140261 + L2b LINE L2 2410 2572 -847 8 1236 481 155 0 37 chr6 85377207 85377314 -64139723 + CT-rich Low_complexity Low_complexity 3 105 0 8 1236 1166 82 0 0 chr6 85377317 85377463 -64139574 - B1_Mus1 SINE Alu -2 146 1 8 1236 236 260 94 33 chr6 85377476 85377580 -64139457 + L2b LINE L2 3246 3349 -38 8 1236 895 283 5 18 chr6 85377595 85377818 -64139219 + ID_B1 SINE B4 1 220 -4 9 1236 295 210 113 0 chr6 85378582 85378644 -64138393 - ID_B1 SINE B4 -52 172 104 9 1236 553 162 243 0 chr6 85379251 85379362 -64137675 + B1_Mus2 SINE Alu 1 138 -9 9 1236 471 285 92 8 chr6 85379427 85379558 -64137479 + B1F1 SINE Alu 1 142 -7 9 1236 729 218 167 0 chr6 85379727 85379901 -64137136 + B3 SINE B2 5 207 -9 9 1236 587 283 156 46 chr6 85380049 85380286 -64136751 - B4A SINE B4 0 292 30 9 1236 1232 41 7 0 chr6 85380321 85380467 -64136570 + B1_Mus1 SINE Alu 2 148 0 9 1236 383 140 0 0 chr6 85380473 85380530 -64136507 + B1_Mus1 SINE Alu 37 93 -55 9 1236 288 297 83 77 chr6 85380492 85380544 -64136493 + ID_B1 SINE B4 47 101 -123 9 1236 198 0 0 0 chr6 85380544 85380566 -64136471 + (TGG)n Simple_repeat Simple_repeat 1 22 0 9 1236 585 170 88 9 chr6 85380568 85380681 -64136356 + B1_Mur4 SINE Alu 20 141 -9 9 1236 682 249 96 23 chr6 85381083 85381260 -64135777 - B3 SINE B2 0 216 27 9 1236 563 266 128 17 chr6 85381257 85381437 -64135600 - ID_B1 SINE B4 -3 221 22 9 1236 335 212 94 59 chr6 85381581 85381666 -64135371 + PB1D7 SINE Alu 39 127 0 9 1236 562 180 218 16 chr6 85382637 85382761 -64134276 - B1_Mur2 SINE Alu 0 149 1 9 1236 677 56 22 0 chr6 85383009 85383098 -64133939 + B1_Mm SINE Alu 1 91 -56 9 1236 531 183 28 37 chr6 85383764 85383872 -64133165 + PB1D10 SINE Alu 10 116 -1 9 1236 1175 62 0 14 chr6 85384193 85384339 -64132698 - B1_Mus1 SINE Alu 0 148 5 9 1236 623 255 20 27 chr6 85384625 85384774 -64132263 - RSINE1 SINE B4 -14 151 4 9 1236 1276 143 30 57 chr6 85384896 85385126 -64131911 + URR1B DNA MER1_type 1 224 -1 9 1236 466 253 0 40 chr6 85385127 85385226 -64131811 - B1F SINE Alu -53 96 2 9 1236 433 114 40 120 chr6 85385469 85385558 -64131479 - B1_Mur4 SINE Alu -16 134 52 9 1236 1437 74 5 10 chr6 85385558 85385750 -64131287 - B2_Mm1t SINE B2 -1 192 2 9 1236 414 0 0 0 chr6 85385789 85385835 -64131202 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1236 243 255 43 0 chr6 85385933 85385980 -64131057 - PB1D10 SINE Alu -67 50 2 9 1236 279 310 28 0 chr6 85385980 85386010 -64131027 - B4A SINE B4 -206 86 55 9 1236 306 242 147 0 chr6 85386182 85386277 -64130760 + PB1D10 SINE Alu 1 109 -8 9 1236 724 190 35 14 chr6 85386565 85386709 -64130328 - B1_Mus1 SINE Alu -1 147 1 9 1236 249 228 53 0 chr6 85386717 85386774 -64130263 - MER5A1 DNA MER1_type -4 162 103 9 1236 529 284 34 7 chr6 85386775 85386924 -64130113 + RSINE1 SINE B4 4 156 -9 9 1236 405 0 0 0 chr6 85386924 85386969 -64130068 + (TC)n Simple_repeat Simple_repeat 1 45 0 9 1236 228 35 0 0 chr6 85386969 85386997 -64130040 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1236 451 258 205 18 chr6 85387543 85387709 -64129328 - B3A SINE B2 0 198 2 9 1236 593 324 11 26 chr6 85387769 85387959 -64129078 - B4A SINE B4 0 292 106 9 1236 297 275 125 0 chr6 85387971 85388051 -64128986 - PB1D10 SINE Alu -16 101 12 9 1236 2032 106 106 3 chr6 85389088 85389438 -64127599 - ORR1B1 LTR MaLR -8 386 1 9 1236 837 42 0 25 chr6 85392812 85392933 -64124104 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 9 1236 224 320 89 10 chr6 85393323 85393347 -64123690 - PB1D10 SINE Alu -7 110 85 9 1236 640 197 329 0 chr6 85393347 85393499 -64123538 + B3 SINE B2 1 202 -14 9 1236 414 0 0 0 chr6 85393503 85393549 -64123488 + (CATA)n Simple_repeat Simple_repeat 2 47 0 9 1236 273 232 100 14 chr6 85393549 85393619 -64123418 - ID_B1 SINE B4 -65 159 84 9 1236 394 265 125 29 chr6 85393623 85393759 -64123278 - B1F1 SINE Alu 0 149 1 9 1236 467 190 24 65 chr6 85393795 85393919 -64123118 - PB1D9 SINE Alu -1 119 1 9 1236 352 209 152 7 chr6 85393940 85394052 -64122985 - B4 SINE B4 -10 155 7 9 1236 326 219 27 0 chr6 85394075 85394148 -64122889 + PB1D10 SINE Alu 35 109 -8 9 1236 222 235 0 0 chr6 85395131 85395182 -64121855 + GA-rich Low_complexity Low_complexity 3 53 0 9 1236 364 224 150 20 chr6 85398751 85398851 -64118186 - PB1D10 SINE Alu -2 115 3 9 1236 410 276 67 0 chr6 85398857 85398991 -64118046 - ID_B1 SINE B4 0 224 82 9 1236 376 226 0 23 chr6 85399265 85399351 -64117686 - PB1 SINE Alu -3 124 41 9 1236 632 309 38 10 chr6 85399376 85399544 -64117493 - B3 SINE B2 0 216 43 9 1236 1162 75 0 7 chr6 85399544 85399692 -64117345 - B1_Mus1 SINE Alu 0 148 2 9 1236 632 309 38 10 chr6 85399692 85399732 -64117305 - B3 SINE B2 -174 42 3 9 1236 1305 62 38 33 chr6 85400084 85400267 -64116770 - B2_Mm2 SINE B2 -9 186 3 9 1236 193 239 22 0 chr6 85400300 85400346 -64116691 + L2b LINE L2 3324 3370 -5 9 1236 209 33 33 0 chr6 85401187 85401217 -64115820 + (CCG)n Simple_repeat Simple_repeat 3 33 0 9 1236 237 320 151 8 chr6 85403253 85403379 -64113658 - B4A SINE B4 -148 144 1 9 1236 591 225 104 23 chr6 85403411 85403584 -64113453 - B3 SINE B2 0 216 30 9 1236 354 237 9 46 chr6 85403814 85403912 -64113125 - PB1D7 SINE Alu -26 101 1 9 1236 1022 195 98 0 chr6 85403918 85404123 -64112914 - URR1B DNA MER1_type 0 225 1 9 1236 524 299 87 38 chr6 85404603 85404787 -64112250 - B3A SINE B2 -5 193 1 9 1236 1062 109 7 0 chr6 85404835 85404982 -64112055 - B1_Mus1 SINE Alu 0 148 1 9 1236 612 215 199 22 chr6 85405277 85405458 -64111579 - B3 SINE B2 0 216 4 9 1236 340 133 0 2 chr6 85406930 85406988 -64110049 + MTC LTR MaLR 2 58 -338 9 1236 348 234 262 44 chr6 85407238 85407280 -64109757 - MTD LTR MaLR -3 416 382 9 1236 1501 182 94 61 chr6 85407280 85407642 -64109395 - ORR1D1 LTR MaLR 0 374 1 9 1236 348 234 262 44 chr6 85407642 85407782 -64109255 - MTD LTR MaLR -38 381 194 9 1236 226 213 174 41 chr6 85407781 85407871 -64109166 - B1_Mus1 SINE Alu -1 147 44 9 1236 961 184 25 35 chr6 85407871 85408068 -64108969 - B2_Mm2 SINE B2 0 195 1 9 1236 338 341 76 89 chr6 85408076 85408101 -64108936 - MTD LTR MaLR -174 222 193 9 1236 1004 68 98 0 chr6 85408101 85408233 -64108804 - B1_Mus1 SINE Alu 0 148 4 9 1236 848 232 60 5 chr6 85408233 85408432 -64108605 - MTD LTR MaLR -209 210 1 9 1236 311 271 11 45 chr6 85409507 85409596 -64107441 + B3A SINE B2 2 87 -111 9 1236 339 270 120 0 chr6 85409643 85409743 -64107294 - PB1D10 SINE Alu -5 112 1 9 1236 686 150 8 8 chr6 85409785 85409913 -64107124 + B2_Mm2 SINE B2 57 184 -11 9 1236 548 223 8 32 chr6 85410185 85410310 -64106727 - B1_Mur3 SINE Alu -5 144 23 9 1236 1274 197 155 33 chr6 85410423 85410759 -64106278 + MTB_Mm LTR MaLR 4 380 -27 9 1236 243 297 138 52 chr6 85412662 85412836 -64104201 + MER3 DNA MER1_type 21 209 0 9 1236 1374 75 38 0 chr6 85412869 85413055 -64103982 - B2_Mm1t SINE B2 0 193 1 9 1236 328 269 43 0 chr6 85413331 85413424 -64103613 - B1F2 SINE Alu -51 98 2 9 1236 299 257 105 79 chr6 85413518 85413632 -64103405 + B4A SINE B4 116 232 -60 9 1236 280 227 21 64 chr6 85413636 85413730 -64103307 + B4 SINE B4 11 100 -192 9 1236 256 170 40 0 chr6 85415228 85415285 -64101752 - B1_Mm SINE Alu 0 150 92 9 1236 599 138 73 0 chr6 85415285 85415394 -64101643 - B1_Mur2 SINE Alu 0 149 33 9 1236 361 271 20 20 chr6 85415412 85415510 -64101527 - PB1D10 SINE Alu -3 114 17 9 1236 514 266 200 6 chr6 85419323 85419493 -64097544 + ID_B1 SINE B4 4 206 -18 9 1236 368 288 99 0 chr6 85423804 85423915 -64093122 + PB1 SINE Alu 4 125 -2 9 1236 707 144 65 43 chr6 85423925 85424063 -64092974 + B1_Mur3 SINE Alu 2 142 -7 9 1236 531 333 54 0 chr6 85424791 85424995 -64092042 + RMER15 LTR ERVL 346 560 -15 9 1236 299 217 0 0 chr6 85425905 85425965 -64091072 - B1F SINE Alu -69 80 21 9 1236 242 197 130 43 chr6 85425909 85425978 -64091059 - ID_B1 SINE B4 -70 154 80 9 1236 425 207 167 40 chr6 85426013 85426139 -64090898 - ID_B1 SINE B4 -1 223 82 9 1236 759 186 7 15 chr6 85426231 85426367 -64090670 - B1_Mus1 SINE Alu -11 137 3 9 1236 264 289 183 0 chr6 85426821 85426925 -64090112 - PB1 SINE Alu -2 125 3 9 1236 461 217 0 0 chr6 85427096 85427179 -64089858 + RSINE1 SINE B4 13 95 -70 9 1236 890 133 0 7 chr6 85427180 85427331 -64089706 + (GGAA)n Simple_repeat Simple_repeat 1 150 0 9 1236 701 244 93 7 chr6 85428870 85429062 -64087975 - ID_B1 SINE B4 -9 215 12 9 1236 315 0 0 0 chr6 85429088 85429123 -64087914 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1236 1220 41 0 7 chr6 85429139 85429286 -64087751 - B1_Mus2 SINE Alu 0 147 2 9 1236 233 265 30 20 chr6 85430304 85430404 -64086633 + GA-rich Low_complexity Low_complexity 3 103 0 9 1236 200 234 0 21 chr6 85430408 85430456 -64086581 + (CAGA)n Simple_repeat Simple_repeat 3 49 0 9 1236 1267 292 29 2 chr6 85431209 85431554 -64085483 + MTEa LTR MaLR 8 355 -24 9 1236 964 186 58 27 chr6 85431554 85431742 -64085295 + B3A SINE B2 3 196 -2 9 1236 1217 299 33 30 chr6 85431742 85431762 -64085275 + MTEa LTR MaLR 356 379 0 9 1236 437 295 64 91 chr6 85432420 85432640 -64084397 + MTD LTR MaLR 153 366 -53 9 1236 270 186 159 23 chr6 85432803 85432891 -64084146 + PB1D7 SINE Alu 9 108 -12 9 1236 3035 33 11 11 chr6 85433264 85433632 -64083405 + L1Md_F2 LINE L1 6203 6570 -12 1 1236 207 175 0 0 chr6 85434535 85434575 -64082462 + (CGG)n Simple_repeat Simple_repeat 2 41 0 1 1236 22 70 0 0 chr6 85434718 85434761 -64082276 + GC_rich Low_complexity Low_complexity 1 43 0 1 1236 785 257 24 19 chr6 85435064 85435274 -64081763 + B3 SINE B2 1 211 -5 1 1236 510 264 14 35 chr6 85435312 85435457 -64081580 + ID_B1 SINE B4 78 219 -5 1 1236 718 236 7 0 chr6 85435486 85435634 -64081403 - B1F SINE Alu 0 149 1 1 1236 282 265 22 78 chr6 85435692 85435713 -64081324 + ID_B1 SINE B4 65 116 -108 1 1236 338 207 0 0 chr6 85435713 85435771 -64081266 + PB1D9 SINE Alu 3 60 -60 1 1236 282 265 22 78 chr6 85435771 85435782 -64081255 + ID_B1 SINE B4 117 149 -75 1 1236 390 277 177 17 chr6 85435813 85436107 -64080930 + L1ME3 LINE L1 5760 6100 -62 1 1236 1345 174 221 3 chr6 85436597 85436919 -64080118 + ORR1B1 LTR MaLR 1 392 -2 1 1236 392 254 101 122 chr6 85437380 85437528 -64079509 - RSINE1 SINE B4 -20 145 1 1 1236 532 286 198 0 chr6 85437526 85437743 -64079294 + MTE2a LTR MaLR 1 260 -119 1 1236 257 188 0 0 chr6 85437760 85437808 -64079229 + MTE2a LTR MaLR 293 340 -39 1 1236 947 116 7 14 chr6 85437858 85437998 -64079039 + B1_Mus1 SINE Alu 1 139 -9 1 1236 357 279 59 134 chr6 85438091 85438123 -64078914 + B4 SINE B4 58 225 -63 1 1236 666 187 0 73 chr6 85438123 85438273 -64078764 + B1_Mur1 SINE Alu 10 148 -1 1 1236 426 39 0 0 chr6 85439090 85439142 -64077895 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1236 293 258 0 0 chr6 85439734 85439796 -64077241 - RSINE1 SINE B4 -19 146 85 1 1236 611 336 68 15 chr6 85439814 85440077 -64076960 - B4A SINE B4 -10 282 6 1 1236 542 280 42 80 chr6 85440080 85440317 -64076720 - B4 SINE B4 -63 229 2 1 1236 259 95 0 23 chr6 85440651 85440694 -64076343 - PB1D7 SINE Alu 0 120 79 1 1236 22 0 0 0 chr6 85441004 85441026 -64076011 + GC_rich Low_complexity Low_complexity 1 22 0 1 1236 568 259 5 152 chr6 85441062 85441253 -64075784 - RSINE1 SINE B4 0 165 3 1 1236 759 188 7 21 chr6 85441256 85441397 -64075640 - B1F SINE Alu -6 143 5 1 1236 785 197 31 87 chr6 85441702 85441897 -64075140 - B3 SINE B2 -6 210 27 1 1236 207 0 0 0 chr6 85442088 85442111 -64074926 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1236 232 250 141 0 chr6 85442123 85442215 -64074822 - B3A SINE B2 -10 188 84 1 1236 276 349 27 9 chr6 85442255 85442365 -64074672 - PB1D10 SINE Alu -5 112 1 1 1236 330 243 18 0 chr6 85442413 85442492 -64074545 + ID SINE ID 6 87 -205 1 1236 291 114 0 0 chr6 85442585 85442629 -64074408 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1236 324 0 0 0 chr6 85442629 85442664 -64074373 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1236 252 310 9 9 chr6 85442750 85442864 -64074173 + L1M4 LINE L1 3337 3450 -2696 1 1236 697 235 0 26 chr6 85442871 85443024 -64074013 + B1_Mur3 SINE Alu 1 149 0 1 1236 209 164 0 47 chr6 85443024 85443088 -64073949 + A-rich Low_complexity Low_complexity 1 61 0 1 1236 2734 160 128 14 chr6 85443142 85443656 -64073381 + RMER15 LTR ERVL 3 575 0 1 1236 1287 57 3 24 chr6 85444060 85444241 -64072796 + MT-int LTR MaLR 692 849 -249 1 1236 675 328 51 16 chr6 85444240 85444515 -64072522 + B4A SINE B4 10 292 0 1 1236 461 17 0 17 chr6 85444888 85444947 -64072090 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 1 1236 281 328 98 119 chr6 85445110 85445622 -64071415 + MLT1K LTR MaLR 40 540 -55 1 1236 527 258 29 65 chr6 85445632 85445802 -64071235 + RSINE1 SINE B4 2 165 0 1 1236 492 283 0 55 chr6 85446105 85446232 -64070805 + B3A SINE B2 8 127 -71 1 1236 700 181 71 0 chr6 85446278 85446405 -64070632 + B1_Mur1 SINE Alu 1 136 -13 1 1236 1000 214 39 29 chr6 85446440 85446647 -64070390 + B3 SINE B2 1 209 -7 1 1236 213 305 181 12 chr6 85446738 85446821 -64070216 + RSINE1 SINE B4 20 116 -49 1 1236 397 320 0 53 chr6 85446904 85447036 -64070001 + ID_B1 SINE B4 100 224 0 1 1236 1150 191 23 19 chr6 85447046 85447260 -64069777 - B3 SINE B2 -1 215 1 1 1236 887 153 0 49 chr6 85447834 85447978 -64069059 + B1_Mur4 SINE Alu 3 139 -11 1 1236 207 0 0 0 chr6 85447978 85448001 -64069036 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1236 273 119 0 0 chr6 85448094 85448136 -64068901 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1236 1106 58 65 0 chr6 85448136 85448274 -64068763 - B1_Mus2 SINE Alu 0 147 1 1 1236 212 77 0 25 chr6 85448361 85448401 -64068636 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1236 459 238 143 0 chr6 85448641 85448746 -64068291 + B4A SINE B4 24 143 -149 1 1236 231 253 9 9 chr6 85448774 85448845 -64068192 + MIRc SINE MIR 63 136 -132 1 1236 366 301 58 29 chr6 85449077 85449214 -64067823 + B4A SINE B4 152 292 0 1 1236 602 244 0 0 chr6 85449253 85449368 -64067669 - ID_B1 SINE B4 0 224 110 1 1236 239 359 155 8 chr6 85449567 85449696 -64067341 + L2c LINE L2 3023 3170 -217 1 1236 970 198 104 0 chr6 85449937 85450129 -64066908 - B3 SINE B2 0 216 5 1 1236 231 254 8 0 chr6 85450449 85450514 -64066523 - MIRc SINE MIR -137 139 73 1 1236 637 290 119 50 chr6 85450525 85450786 -64066251 + MLT1H2 LTR MaLR 19 297 -192 1 1236 259 222 92 31 chr6 85450879 85450944 -64066093 + PB1D10 SINE Alu 9 77 -40 1 1236 350 268 0 0 chr6 85450934 85451017 -64066020 + ID4_ SINE ID 12 94 -58 1 1236 595 237 181 37 chr6 85454312 85454527 -64062510 + MTEa LTR MaLR 122 367 -12 1 1236 385 303 0 38 chr6 85454832 85455071 -64061966 + (TATG)n Simple_repeat Simple_repeat 1 229 0 1 1236 556 230 184 0 chr6 85455679 85455831 -64061206 - B3A SINE B2 -16 182 3 1 1236 690 209 34 67 chr6 85455844 85455993 -64061044 - B1_Mur3 SINE Alu 0 149 6 1 1236 263 281 173 96 chr6 85456071 85456331 -64060706 - B4A SINE B4 -11 281 2 1 1236 301 243 0 13 chr6 85456585 85456660 -64060377 + ID4 SINE ID 1 74 -9 1 1236 504 0 0 0 chr6 85456660 85456716 -64060321 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 1 1236 183 129 0 0 chr6 85456717 85456748 -64060289 + (ATAAG)n Simple_repeat Simple_repeat 2 32 0 1 1236 325 292 57 0 chr6 85456965 85457071 -64059966 + B1_Mur3 SINE Alu 1 112 -37 1 1236 691 216 23 23 chr6 85457262 85457447 -64059590 + B3 SINE B2 11 195 0 1 1236 1090 121 181 13 chr6 85457885 85458038 -64058999 + RMER1A Other Other 699 868 -162 1 1236 224 30 30 0 chr6 85458038 85458071 -64058966 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1236 1090 128 243 0 chr6 85458071 85458191 -64058846 + RMER1A Other Other 869 1028 -2 1 154 2305 187 110 24 chr6 85458584 85459094 -64057943 - RMER15 LTR ERVL -2 573 20 1 1237 702 223 111 5 chr6 85459191 85459398 -64057639 + B4 SINE B4 1 229 -63 1 1237 405 325 22 99 chr6 85459496 85459728 -64057309 + B4A SINE B4 11 224 -68 1 1237 426 20 0 0 chr6 85459729 85459780 -64057257 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1237 899 255 53 14 chr6 85459795 85460002 -64057035 + B3 SINE B2 2 216 0 1 1237 22 35 0 0 chr6 85463391 85463420 -64053617 + GC_rich Low_complexity Low_complexity 1 29 0 1 1237 646 218 7 72 chr6 85464318 85464471 -64052566 - B1F2 SINE Alu -6 143 1 1 1237 365 307 50 111 chr6 85464471 85464511 -64052526 - B4 SINE B4 -67 220 40 1 1237 776 233 22 22 chr6 85465039 85465219 -64051818 - B3A SINE B2 -16 182 3 1 1237 526 205 168 20 chr6 85465711 85465768 -64051269 + ID SINE ID 1 79 -145 1 1237 395 282 45 9 chr6 85465768 85465879 -64051158 + PB1D7 SINE Alu 1 115 -5 1 1237 679 285 60 48 chr6 85466673 85466708 -64050329 - B4A SINE B4 -18 274 237 1 1237 1897 196 29 29 chr6 85466708 85466786 -64050251 + MTD LTR MaLR 5 75 -344 1 1237 185 0 40 0 chr6 85466786 85466811 -64050226 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1237 1897 196 29 29 chr6 85466811 85467146 -64049891 + MTD LTR MaLR 76 417 -2 1 1237 679 285 60 48 chr6 85467146 85467379 -64049658 - B4A SINE B4 -56 236 4 1 1237 207 69 0 0 chr6 85467897 85467926 -64049111 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1237 258 32 0 0 chr6 85468008 85468039 -64048998 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1 1237 195 268 36 0 chr6 85468040 85468096 -64048941 - L2b LINE L2 -5 3370 3313 1 1237 226 329 13 0 chr6 85468438 85468517 -64048520 + CT-rich Low_complexity Low_complexity 2 81 0 1 1237 212 328 0 0 chr6 85468767 85468828 -64048209 + CT-rich Low_complexity Low_complexity 4 64 0 1 1237 965 271 19 0 chr6 85468917 85469131 -64047906 - ID_B1 SINE B4 -3 221 4 1 1237 524 221 93 64 chr6 85469227 85469367 -64047670 + B1F SINE Alu 6 149 0 1 1237 798 214 154 5 chr6 85469369 85469557 -64047480 + B3 SINE B2 1 216 0 1 1237 641 223 143 5 chr6 85469589 85469778 -64047259 + B3 SINE B2 2 216 0 1 1237 450 274 38 0 chr6 85469810 85469916 -64047121 + PB1D10 SINE Alu 1 110 -7 1 1237 541 214 89 62 chr6 85469979 85470030 -64047007 - B2_Mm2 SINE B2 -9 186 136 1 1237 243 0 0 0 chr6 85470030 85470057 -64046980 + (TATG)n Simple_repeat Simple_repeat 4 30 0 1 1237 678 186 33 9 chr6 85470057 85470184 -64046853 - B3 SINE B2 -60 135 3 1 1237 394 322 106 11 chr6 85470228 85470416 -64046621 - MIR SINE MIR -8 260 55 1 1237 2086 159 170 5 chr6 85470829 85471252 -64045785 + RMER1A Other Other 283 775 -255 1 1237 525 231 41 0 chr6 85471278 85471399 -64045638 + MTE2a LTR MaLR 254 379 0 1 1237 365 159 10 146 chr6 85471434 85471537 -64045500 - B3 SINE B2 -82 134 46 1 1237 407 229 0 24 chr6 85471520 85471605 -64045432 - RSINE1 SINE B4 -82 83 1 1 1237 411 38 0 0 chr6 85471786 85471839 -64045198 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 1 1237 629 178 356 0 chr6 85471843 85471989 -64045048 - B3 SINE B2 -17 199 2 1 1237 576 280 57 81 chr6 85472065 85472275 -64044762 - ID_B1 SINE B4 -2 222 18 1 1237 276 316 48 29 chr6 85472556 85472692 -64044345 + MIRm SINE MIR 25 157 -51 1 1237 256 282 95 43 chr6 85473539 85473688 -64043349 + MIR3 SINE MIR 15 174 -94 1 1237 808 241 62 24 chr6 85473833 85474041 -64042996 + ID_B1 SINE B4 4 219 -5 1 1237 759 229 88 16 chr6 85474200 85474382 -64042655 + B3 SINE B2 1 195 -21 1 1237 393 102 0 0 chr6 85474382 85474441 -64042596 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1 1237 497 239 53 115 chr6 85474441 85474466 -64042571 + B2_Mm2 SINE B2 171 195 0 1 1237 637 163 91 14 chr6 85474504 85474641 -64042396 - B1_Mur1 SINE Alu -1 148 15 1 1237 363 302 23 78 chr6 85475100 85475229 -64041808 - RSINE1 SINE B4 -10 155 34 1 1237 328 228 45 117 chr6 85475324 85475478 -64041559 + YREP_Mm Unknown Unknown 152 294 -1518 1 1237 838 157 22 7 chr6 85475355 85475490 -64041547 - B1_Mur1 SINE Alu -2 147 11 1 1237 1292 20 0 0 chr6 85476065 85476211 -64040826 + B1_Mus1 SINE Alu 1 146 -2 1 1237 186 43 0 0 chr6 85476211 85476234 -64040803 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1237 573 254 31 88 chr6 85476255 85476404 -64040633 - B3A SINE B2 -15 183 30 1 1237 1324 115 16 0 chr6 85476404 85476596 -64040441 - B2_Mm2 SINE B2 0 195 1 1 1237 573 254 31 88 chr6 85476596 85476640 -64040397 - B3A SINE B2 -169 29 1 1 1237 1685 27 0 0 chr6 85476769 85476957 -64040080 + B2_Mm1t SINE B2 1 188 -5 1 1237 410 0 20 0 chr6 85476963 85477013 -64040024 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1237 457 237 20 30 chr6 85477028 85477128 -64039909 - RSINE1 SINE B4 -28 137 39 1 1237 1188 186 111 102 chr6 85477128 85477362 -64039675 - ORR1D1 LTR MaLR 0 374 130 1 1237 1101 88 7 0 chr6 85477362 85477509 -64039528 + B1_Mus1 SINE Alu 1 148 0 1 1237 1188 186 111 102 chr6 85477509 85477645 -64039392 - ORR1D1 LTR MaLR -245 129 1 1 1237 490 267 20 33 chr6 85477846 85477997 -64039040 + B1F SINE Alu 1 149 0 1 1237 402 147 0 0 chr6 85478009 85478077 -64038960 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1237 706 294 13 109 chr6 85478304 85478408 -64038629 + MTEb LTR MaLR 1 86 -293 1 1237 875 202 104 26 chr6 85478408 85478601 -64038436 - B3 SINE B2 -8 208 1 1 1237 706 294 13 109 chr6 85478601 85478725 -64038312 + MTEb LTR MaLR 87 207 -172 1 1237 728 54 0 0 chr6 85478725 85478817 -64038220 + BC1_Mm scRNA scRNA 1 92 -60 1 1237 188 67 0 32 chr6 85478858 85478889 -64038148 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1237 626 232 59 142 chr6 85478895 85478967 -64038070 - B4 SINE B4 -16 276 138 1 1237 1118 44 7 0 chr6 85478967 85479104 -64037933 - B1_Mus2 SINE Alu -1 146 9 1 1237 626 232 59 142 chr6 85479104 85479136 -64037901 - B4 SINE B4 -16 137 72 1 1237 328 241 22 11 chr6 85479156 85479245 -64037792 - B4 SINE B4 -68 97 9 1 1237 733 235 89 6 chr6 85479230 85479410 -64037627 + MTEb LTR MaLR 183 377 -2 1 1237 754 206 44 0 chr6 85480085 85480245 -64036792 + ORR1D1 LTR MaLR 57 223 -151 1 1237 322 256 13 0 chr6 85480848 85480926 -64036111 - ID2 SINE ID 0 83 5 1 1237 838 276 26 38 chr6 85480961 85481300 -64035737 - L1M2 LINE L1 -1055 5088 4754 1 1237 918 265 81 48 chr6 85481372 85481426 -64035611 - B4A SINE B4 -9 283 234 1 1237 2582 86 0 0 chr6 85481426 85481752 -64035285 + ORR1A3 LTR MaLR 1 326 0 1 1237 918 265 81 48 chr6 85481752 85481970 -64035067 - B4A SINE B4 -59 233 2 1 1237 515 222 37 67 chr6 85482038 85482156 -64034881 + MTC LTR MaLR 1 114 -307 1 1237 737 96 10 0 chr6 85482156 85482260 -64034777 - MTD LTR MaLR 0 419 315 1 1237 1462 160 8 0 chr6 85482280 85482517 -64034520 + MTC LTR MaLR 100 338 -83 1 1237 663 265 278 0 chr6 85482583 85482732 -64034305 + B4 SINE B4 8 212 -80 1 1237 212 0 36 0 chr6 85482732 85482760 -64034277 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 1237 663 265 278 0 chr6 85482760 85482833 -64034204 + B4 SINE B4 213 291 -1 1 1237 603 219 9 154 chr6 85482857 85483084 -64033953 + B3A SINE B2 5 198 0 1 1237 356 250 120 0 chr6 85483132 85483224 -64033813 + PB1D7 SINE Alu 11 113 -7 1 1237 324 0 0 0 chr6 85483267 85483303 -64033734 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1237 403 244 0 0 chr6 85483303 85483381 -64033656 - 5S rRNA rRNA -31 90 13 1 1237 3117 193 111 73 chr6 85483444 85484288 -64032749 - RMER13B LTR ERVK 0 908 33 1 1237 1354 47 0 0 chr6 85484288 85484447 -64032590 + B2_Mm1a SINE B2 2 160 -33 1 1237 288 0 0 0 chr6 85484447 85484479 -64032558 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1 1237 282 98 0 0 chr6 85484489 85484530 -64032507 - RMER13B LTR ERVK -866 42 2 1 1237 1241 202 9 5 chr6 85484609 85484823 -64032214 - B3 SINE B2 0 216 2 1 1237 770 185 15 15 chr6 85485124 85485261 -64031776 + ID_B1 SINE B4 87 223 -1 1 1237 336 256 62 76 chr6 85485138 85485264 -64031773 - YREP_Mm Unknown Unknown -1516 296 177 1 1237 475 261 156 7 chr6 85485264 85485399 -64031638 + RSINE1 SINE B4 3 157 -8 1 1237 336 256 62 76 chr6 85485399 85485416 -64031621 - YREP_Mm Unknown Unknown -1636 176 157 1 1237 2966 40 0 3 chr6 85485922 85486271 -64030766 - L1_Mus1 LINE L1 0 6567 6220 1 1237 524 274 7 43 chr6 85486553 85486694 -64030343 + B3A SINE B2 1 136 -62 1 1237 470 243 63 89 chr6 85486766 85486956 -64030081 - B3A SINE B2 -13 185 1 1 1237 1172 252 132 39 chr6 85487237 85487700 -64029337 - RMER5 LTR ERV1 -2 532 27 1 1237 300 171 55 41 chr6 85488133 85488206 -64028831 + B2_Mm2 SINE B2 2 75 -120 1 1237 691 236 68 0 chr6 85488333 85488494 -64028543 - RMER15 LTR ERVL 0 575 404 1 1237 307 310 56 43 chr6 85488507 85488669 -64028368 - RMER15 LTR ERVL -350 225 62 1 1237 811 158 12 104 chr6 85488758 85488796 -64028241 + B1_Mur4 SINE Alu 3 40 -110 1 1237 1222 48 7 0 chr6 85488796 85488942 -64028095 + B1_Mm SINE Alu 1 147 0 1 1237 811 158 12 104 chr6 85488942 85489066 -64027971 + B1_Mur4 SINE Alu 41 150 0 1 1237 237 224 81 95 chr6 85489382 85489456 -64027581 - RSINE1 SINE B4 -73 92 20 1 1237 517 172 0 0 chr6 85489483 85489570 -64027467 - B1_Mur1 SINE Alu 0 149 63 1 1237 230 204 0 85 chr6 85489518 85489577 -64027460 - MT2B LTR ERVL -337 264 211 1 1237 2045 237 18 23 chr6 85489988 85490238 -64026799 + L1MA8 LINE L1 5535 5782 -509 1 1237 923 50 53 13 chr6 85490238 85490540 -64026497 + (CA)n Simple_repeat Simple_repeat 1 313 0 1 1237 2045 237 18 23 chr6 85490540 85490858 -64026179 + L1MA8 LINE L1 5783 6100 -191 1 1237 2436 108 3 0 chr6 85491029 85491353 -64025684 - ORR1A2 LTR MaLR -2 325 1 1 1237 1111 183 31 0 chr6 85491357 85491548 -64025489 - B3 SINE B2 -18 198 2 1 1237 311 65 22 0 chr6 85491885 85491931 -64025106 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1237 580 244 22 22 chr6 85492049 85492187 -64024850 - B1_Mur3 SINE Alu 0 149 12 1 1237 862 214 15 41 chr6 85492206 85492401 -64024636 - B3A SINE B2 0 198 9 1 1237 673 302 63 27 chr6 85492405 85492626 -64024411 - B4A SINE B4 -60 232 4 1 1237 1658 153 23 39 chr6 85492678 85492903 -64024134 - MT2A LTR ERVL -231 302 79 1 1237 1210 61 0 7 chr6 85492903 85493043 -64023994 + B1_Mus1 SINE Alu 1 140 -8 1 1237 290 0 75 0 chr6 85493043 85493083 -64023954 + (CTAAA)n Simple_repeat Simple_repeat 3 45 0 1 1237 1658 153 23 39 chr6 85493091 85493172 -64023865 - MT2A LTR ERVL -455 78 1 1 1237 413 247 0 43 chr6 85493191 85493284 -64023753 - ID_B1 SINE B4 -99 125 37 1 1237 1123 248 71 67 chr6 85493284 85493663 -64023374 + MTE2b LTR MaLR 1 396 -23 1 1237 301 192 27 27 chr6 85493763 85493838 -64023199 - MIRb SINE MIR -130 138 64 1 1237 393 22 0 0 chr6 85495580 85495626 -64021411 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1237 746 266 49 5 chr6 85495692 85495896 -64021141 - B3 SINE B2 0 216 4 1 1237 606 39 0 0 chr6 85495896 85495973 -64021064 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1 1237 1208 61 0 0 chr6 85495992 85496139 -64020898 - B1_Mm SINE Alu 0 147 1 1 1237 539 237 108 29 chr6 85496162 85496366 -64020671 - Lx8 LINE L1 -9 7464 7245 1 1237 506 287 49 0 chr6 85496880 85497002 -64020035 - RSINE1 SINE B4 -31 134 7 1 1237 889 263 19 0 chr6 85497017 85497226 -64019811 - ID_B1 SINE B4 -9 215 3 1 1237 254 264 75 32 chr6 85497678 85497772 -64019265 + MIRb SINE MIR 140 237 -31 1 1237 1243 230 68 130 chr6 85498109 85498563 -64018474 - RLTR23 LTR ERV1 0 430 5 1 1237 890 188 10 67 chr6 85498589 85498783 -64018254 - B3A SINE B2 -15 183 1 1 1237 531 266 39 8 chr6 85498792 85498921 -64018116 - ID_B1 SINE B4 -9 215 83 1 1237 978 208 68 19 chr6 85498942 85499148 -64017889 - B3 SINE B2 0 216 1 1 1237 2492 152 34 24 chr6 85499342 85499759 -64017278 + MTC LTR MaLR 1 421 0 1 1237 352 253 13 52 chr6 85499795 85499879 -64017158 + ID_B1 SINE B4 81 157 -67 1 1237 616 160 168 0 chr6 85499879 85499998 -64017039 + B3 SINE B2 2 140 -76 1 1237 275 200 0 0 chr6 85500002 85500052 -64016985 + B3 SINE B2 146 195 -21 1 1237 503 143 92 0 chr6 85500232 85500330 -64016707 + RMER19B LTR ERVK 1 107 -795 2 1237 2433 167 128 49 chr6 85500341 85500958 -64016079 + RMER19B LTR ERVK 237 902 0 2 1237 295 256 61 0 chr6 85500958 85501039 -64015998 - B1F1 SINE Alu -58 91 6 3 1237 638 183 0 20 chr6 85501075 85501228 -64015809 - B1_Mur4 SINE Alu -5 142 1 4 1237 850 187 14 0 chr6 85501259 85501398 -64015639 + B1_Mur1 SINE Alu 2 142 -7 5 1237 683 244 13 13 chr6 85501432 85501586 -64015451 - RSINE1 SINE B4 -10 155 2 6 1237 275 220 0 0 chr6 85501805 85501855 -64015182 + ID SINE ID 8 57 -167 7 1237 1785 160 119 12 chr6 85501855 85502019 -64015018 + ORR1D1 LTR MaLR 4 176 -198 8 1237 705 56 0 0 chr6 85502019 85502109 -64014928 + (TC)n Simple_repeat Simple_repeat 2 91 0 9 1237 1785 160 119 12 chr6 85502109 85502145 -64014892 + ORR1D1 LTR MaLR 177 238 -136 8 1237 189 0 0 0 chr6 85502145 85502166 -64014871 + (CATG)n Simple_repeat Simple_repeat 1 21 0 1 1237 1785 160 119 12 chr6 85502166 85502299 -64014738 + ORR1D1 LTR MaLR 239 373 -1 8 1237 567 229 253 0 chr6 85502524 85502690 -64014347 + B3 SINE B2 9 216 0 1 1237 484 215 72 45 chr6 85502714 85502922 -64014115 + L1MB4 LINE L1 5941 6180 0 1 1237 421 159 42 21 chr6 85502917 85503013 -64014024 + RMER1B Other Other 969 1066 0 1 1237 272 239 62 42 chr6 85503017 85503032 -64014005 + L1M5 LINE L1 5602 5616 -563 1 1237 918 236 81 126 chr6 85503032 85503429 -64013608 + MTE2a LTR MaLR 1 379 0 1 1237 272 239 62 42 chr6 85503429 85503509 -64013528 + L1M5 LINE L1 5617 5699 -480 1 1237 3937 66 2 21 chr6 85503530 85504053 -64012984 + L1Md_F2 LINE L1 6068 6580 -2 1 1237 330 258 268 6 chr6 85504057 85504221 -64012816 - B3 SINE B2 -9 207 1 1 1237 280 295 10 10 chr6 85504294 85504390 -64012647 + L1MB7 LINE L1 5997 6092 -92 1 1237 415 208 208 0 chr6 85504615 85504735 -64012302 - B3A SINE B2 -38 160 16 1 1237 682 259 7 0 chr6 85504776 85504923 -64012114 - B1_Mur1 SINE Alu -1 148 1 2 1237 490 258 0 8 chr6 85505143 85505264 -64011773 + B4A SINE B4 1 120 -172 2 1237 265 174 0 0 chr6 85505281 85505327 -64011710 + B4A SINE B4 176 221 -71 2 1237 1052 174 66 35 chr6 85505881 85506102 -64010935 - MTC LTR MaLR -87 334 107 2 1237 1029 106 12 30 chr6 85506102 85506267 -64010770 + B2_Mm2 SINE B2 1 162 -33 2 1237 216 0 0 0 chr6 85506267 85506291 -64010746 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2 1237 929 162 6 0 chr6 85506295 85506468 -64010569 + GA-rich Low_complexity Low_complexity 4 177 0 2 1237 519 175 52 9 chr6 85506469 85506584 -64010453 - MTC LTR MaLR -299 120 1 2 1237 606 232 179 0 chr6 85506642 85506832 -64010205 - ID_B1 SINE B4 0 224 1 2 1237 199 338 60 48 chr6 85507034 85507118 -64009919 + L2 LINE L2 24 108 -3311 2 1237 294 276 26 0 chr6 85507224 85507300 -64009737 + ID_B1 SINE B4 84 161 -63 2 1237 888 126 7 36 chr6 85507325 85507465 -64009572 + B1_Mur4 SINE Alu 5 140 -10 2 1237 198 0 0 0 chr6 85507465 85507487 -64009550 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1237 204 40 0 0 chr6 85507489 85507514 -64009523 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1237 351 0 0 0 chr6 85507531 85507570 -64009467 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1237 326 313 80 51 chr6 85507900 85508213 -64008824 - L2 LINE L2 -925 2494 2173 3 1237 1247 252 20 10 chr6 85508233 85508530 -64008507 - MTEb LTR MaLR -24 355 56 3 1237 253 341 0 11 chr6 85508533 85508622 -64008415 + CT-rich Low_complexity Low_complexity 4 91 0 3 1237 252 122 0 0 chr6 85508622 85508663 -64008374 + (TCTG)n Simple_repeat Simple_repeat 1 41 0 3 1237 479 335 6 19 chr6 85508663 85508821 -64008216 - MTEa LTR MaLR -223 156 1 3 1237 813 187 0 0 chr6 85509078 85509212 -64007825 - B1_Mur3 SINE Alu -6 143 10 3 1237 197 257 40 26 chr6 85509502 85509578 -64007459 - L2 LINE L2 -1909 1510 1434 3 1237 683 250 201 0 chr6 85509827 85510011 -64007026 + ID_B1 SINE B4 1 221 -3 3 1237 411 267 0 0 chr6 85510024 85510110 -64006927 + PB1D10 SINE Alu 27 112 -5 4 1237 511 237 122 0 chr6 85510117 85510248 -64006789 + B1_Mur2 SINE Alu 2 148 -1 4 1237 378 179 90 0 chr6 85510933 85511011 -64006026 - B1F SINE Alu 0 149 65 4 1237 1235 89 6 0 chr6 85511046 85511225 -64005812 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 1237 1295 67 11 0 chr6 85511248 85511426 -64005611 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1237 462 219 114 32 chr6 85511426 85511549 -64005488 - B1_Mur1 SINE Alu -16 133 1 4 1237 747 282 45 78 chr6 85511582 85511916 -64005121 + MTE2a LTR MaLR 57 379 0 4 1237 338 267 114 48 chr6 85512274 85512502 -64004535 - L1ME4a LINE L1 0 6124 5882 4 1237 732 212 47 21 chr6 85512514 85512707 -64004330 - B3A SINE B2 0 198 1 4 1237 1985 133 85 74 chr6 85512786 85513176 -64003861 - ORR1B1 LTR MaLR 0 394 1 4 1237 346 318 170 5 chr6 85513195 85513407 -64003630 - L1ME4a LINE L1 -1115 5031 4785 4 1237 284 267 119 0 chr6 85513454 85513555 -64003482 - B1F SINE Alu -12 137 25 5 1237 414 0 0 0 chr6 85513613 85513659 -64003378 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1237 299 268 0 0 chr6 85513669 85513725 -64003312 - B4A SINE B4 -15 277 222 5 1237 23 54 0 0 chr6 85513725 85513762 -64003275 + AT_rich Low_complexity Low_complexity 1 37 0 5 1237 684 219 18 74 chr6 85513763 85513926 -64003111 - RSINE1 SINE B4 0 165 12 5 1237 222 37 0 0 chr6 85513954 85513981 -64003056 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1237 684 233 264 16 chr6 85513983 85514306 -64002731 + MTD LTR MaLR 15 417 -2 5 1237 340 244 47 28 chr6 85514306 85514446 -64002591 - B4 SINE B4 -81 211 35 5 1237 3941 98 21 84 chr6 85514450 85515197 -64001840 + RMER6A LTR ERVK 57 756 0 5 1237 1065 195 25 0 chr6 85515300 85515500 -64001537 - B3 SINE B2 -7 209 5 5 1237 1278 203 59 19 chr6 85515558 85515865 -64001172 + ORR1D1 LTR MaLR 1 319 -55 5 1237 504 168 0 92 chr6 85515872 85516003 -64001034 - Lx7 LINE L1 0 7696 7578 6 1237 2670 126 27 5 chr6 85515979 85516386 -64000651 - Lx4A LINE L1 -124 6934 6519 6 1237 3794 188 61 45 chr6 85516386 85516411 -64000626 - Lx7 LINE L1 -911 6785 6751 6 1237 411 21 0 0 chr6 85516411 85516459 -64000578 + (TTA)n Simple_repeat Simple_repeat 1 48 0 6 1237 3794 188 61 45 chr6 85516459 85517254 -63999783 - Lx7 LINE L1 -946 6750 5952 6 1237 457 88 29 0 chr6 85517254 85517322 -63999715 + ORR1D1 LTR MaLR 315 384 0 5 1237 454 253 82 17 chr6 85517325 85517512 -63999525 + L1M5 LINE L1 5513 5713 -467 6 1237 950 153 7 0 chr6 85517512 85517656 -63999381 - B1_Mur4 SINE Alu -5 145 1 6 1237 1015 58 80 0 chr6 85517684 85517821 -63999216 + B1_Mus1 SINE Alu 1 148 0 6 1237 222 143 0 0 chr6 85517823 85517872 -63999165 + (A)n Simple_repeat Simple_repeat 1 49 0 6 1237 1169 48 0 33 chr6 85517904 85518054 -63998983 - B1_Mus2 SINE Alu -1 146 2 6 1237 633 211 8 15 chr6 85518060 85518190 -63998847 + B1_Mur1 SINE Alu 19 147 -2 6 1237 230 272 130 0 chr6 85518222 85518314 -63998723 + L1M5 LINE L1 5725 5828 -412 6 1237 682 122 354 31 chr6 85518654 85518815 -63998222 - B3 SINE B2 -3 213 1 6 1237 1239 123 17 0 chr6 85518835 85519014 -63998023 - B2_Mm2 SINE B2 -9 186 5 7 1237 984 267 85 133 chr6 85519091 85519179 -63997858 - Lx8 LINE L1 -29 7444 7340 7 1237 414 57 0 0 chr6 85519179 85519232 -63997805 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 7 1237 984 267 85 133 chr6 85519232 85519329 -63997708 - Lx8 LINE L1 -134 7339 7223 7 1237 1069 164 72 31 chr6 85519329 85519524 -63997513 + B3 SINE B2 2 204 -12 7 1237 984 267 85 133 chr6 85519524 85519546 -63997491 - Lx8 LINE L1 -251 7222 7222 7 1237 1066 50 57 7 chr6 85519546 85519686 -63997351 - B1_Mus1 SINE Alu 0 148 2 7 1237 984 267 85 133 chr6 85519686 85520008 -63997029 - Lx8 LINE L1 -251 7222 6941 7 1237 785 248 28 9 chr6 85520051 85520267 -63996770 - ID_B1 SINE B4 0 224 5 7 1237 1181 55 0 0 chr6 85520369 85520514 -63996523 + B1_Mus2 SINE Alu 3 147 0 7 1237 1552 220 104 3 chr6 85520832 85521206 -63995831 - MTD LTR MaLR -3 416 5 7 1237 22 56 0 0 chr6 85521531 85521567 -63995470 + AT_rich Low_complexity Low_complexity 1 36 0 7 1237 1901 120 0 126 chr6 85521567 85521904 -63995133 + ORR1B1 LTR MaLR 1 336 -58 8 1237 1149 43 0 7 chr6 85521904 85522043 -63994994 + B1_Mus1 SINE Alu 2 139 -9 8 1237 318 26 0 0 chr6 85522043 85522082 -63994955 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1237 1901 119 0 129 chr6 85522082 85522147 -63994890 + ORR1B1 LTR MaLR 337 385 -9 8 1237 398 253 44 0 chr6 85522220 85522311 -63994726 + PB1D10 SINE Alu 6 100 -17 8 1237 608 233 176 0 chr6 85522315 85522491 -63994546 + B3 SINE B2 1 207 -9 8 1237 614 229 119 5 chr6 85522823 85523034 -63994003 + B4 SINE B4 2 240 -52 8 1237 510 186 115 0 chr6 85523081 85523194 -63993843 - RSINE1 SINE B4 -17 148 23 8 1237 461 192 0 47 chr6 85523201 85523304 -63993733 + B1F1 SINE Alu 53 149 0 8 1237 214 50 50 0 chr6 85523304 85523344 -63993693 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 8 1237 845 253 59 21 chr6 85523701 85523988 -63993049 - Lx9 LINE L1 -203 7441 7144 8 1237 697 237 63 2 chr6 85524059 85524222 -63992815 + B3 SINE B2 1 163 -32 9 1237 360 0 0 0 chr6 85524222 85524262 -63992775 + (TA)n Simple_repeat Simple_repeat 1 40 0 9 1237 638 244 26 32 chr6 85524262 85524288 -63992749 + B2_Mm2 SINE B2 164 189 -6 9 1237 300 102 0 0 chr6 85524455 85524504 -63992533 + (CATA)n Simple_repeat Simple_repeat 2 50 0 9 1237 2197 140 77 6 chr6 85524638 85525004 -63992033 - ORR1B1 LTR MaLR -2 392 1 9 1237 554 200 36 36 chr6 85525275 85525415 -63991622 - RSINE1 SINE B4 -24 141 2 9 1237 400 279 10 0 chr6 85525841 85525945 -63991092 + L1MA6 LINE L1 5838 5942 -358 9 1237 315 291 79 49 chr6 85525947 85526136 -63990901 + B4A SINE B4 2 205 -87 9 1237 234 150 0 0 chr6 85526151 85526191 -63990846 + (GGA)n Simple_repeat Simple_repeat 3 42 0 9 1237 248 224 104 0 chr6 85526192 85526259 -63990778 + B4A SINE B4 1 74 -218 9 1237 201 74 0 0 chr6 85526266 85526293 -63990744 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1237 207 69 0 0 chr6 85526342 85526371 -63990666 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 1 1237 319 260 13 13 chr6 85526464 85526542 -63990495 - RSINE1 SINE B4 -85 80 3 1 1237 527 201 29 151 chr6 85526723 85526793 -63990244 + L1MA6 LINE L1 6121 6172 -128 9 1237 820 236 80 0 chr6 85526793 85526943 -63990094 + B3 SINE B2 2 153 -63 1 1237 504 0 0 0 chr6 85526943 85526999 -63990038 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1237 820 236 80 0 chr6 85526999 85527047 -63989990 + B3 SINE B2 154 214 -2 1 1237 527 201 29 151 chr6 85527047 85527181 -63989856 + L1MA6 LINE L1 6173 6300 0 9 1237 236 28 56 0 chr6 85527204 85527240 -63989797 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 1 1237 234 341 31 52 chr6 85527466 85527562 -63989475 - PB1D10 SINE Alu -1 116 23 1 1237 450 313 99 20 chr6 85528252 85528441 -63988596 + B4A SINE B4 28 232 -60 1 1237 512 297 94 0 chr6 85528441 85528579 -63988458 + B3A SINE B2 1 151 -47 1 1237 441 0 0 0 chr6 85528587 85528636 -63988401 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1237 529 239 17 0 chr6 85528653 85528770 -63988267 + PB1D9 SINE Alu 1 119 -1 1 1237 210 301 14 14 chr6 85528874 85528948 -63988089 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1237 783 268 14 36 chr6 85528963 85529184 -63987853 + B3 SINE B2 1 216 0 1 1237 783 204 14 0 chr6 85529212 85529359 -63987678 + B1_Mur1 SINE Alu 1 149 0 1 1237 1145 94 0 12 chr6 85529460 85529632 -63987405 + B2_Mm2 SINE B2 1 170 -25 1 1237 4121 34 0 12 chr6 85529724 85530205 -63986832 + MT2C_Mm LTR ERVL 1 475 0 1 1237 345 47 0 0 chr6 85530640 85530683 -63986354 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1237 531 220 9 9 chr6 85530714 85530824 -63986213 - B3A SINE B2 -88 110 1 1 1237 979 234 33 9 chr6 85531076 85531287 -63985750 + B3 SINE B2 1 216 0 1 1237 561 310 58 53 chr6 85531704 85531937 -63985100 + ERVL-B4-int LTR ERVL 1813 2052 -3662 1 1237 1067 228 32 105 chr6 85531937 85532025 -63985012 - B4A SINE B4 -1 291 231 1 1237 1287 89 34 0 chr6 85532025 85532204 -63984833 - B2_Mm1t SINE B2 -8 185 1 1 1237 955 221 48 19 chr6 85532204 85532412 -63984625 - B3 SINE B2 -2 214 1 1 1237 1067 228 32 105 chr6 85532412 85532636 -63984401 - B4A SINE B4 -62 230 2 1 1237 561 310 58 53 chr6 85532636 85532852 -63984185 + ERVL-B4-int LTR ERVL 2053 2264 -3450 1 1237 613 168 59 37 chr6 85532856 85532992 -63984045 - B1_Mur1 SINE Alu 0 149 11 1 1237 383 309 24 0 chr6 85532983 85533106 -63983931 + MLT2B5 LTR ERVL 68 193 -408 1 1237 724 154 61 8 chr6 85533148 85533279 -63983758 - B1_Mus2 SINE Alu -1 146 9 1 1237 256 270 129 92 chr6 85533343 85533506 -63983531 + MLT2B5 LTR ERVL 326 494 -61 1 1237 1211 48 0 0 chr6 85533563 85533708 -63983329 + B1_Mus1 SINE Alu 4 148 0 1 1237 782 201 103 0 chr6 85534181 85534365 -63982672 + B3 SINE B2 8 210 -6 1 1237 378 303 82 0 chr6 85534890 85535012 -63982025 + B1F SINE Alu 1 132 -17 1 1237 234 0 0 0 chr6 85535015 85535041 -63981996 + (CAAG)n Simple_repeat Simple_repeat 4 29 0 1 1237 246 22 20 61 chr6 85535077 85535126 -63981911 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1237 896 251 56 78 chr6 85535235 85535555 -63981482 - MTE2b LTR MaLR -1 378 66 1 1237 412 224 234 38 chr6 85535547 85535705 -63981332 + MTE2a LTR MaLR 177 365 -14 1 1237 667 214 28 0 chr6 85536452 85536597 -63980440 - B1_Mur2 SINE Alu 0 149 1 1 1237 357 262 78 47 chr6 85536611 85536739 -63980298 - RSINE1 SINE B4 -33 132 1 1 1237 213 65 0 0 chr6 85536785 85536816 -63980221 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1237 651 133 19 0 chr6 85536830 85536935 -63980102 - PB1D9 SINE Alu -5 115 9 1 1237 739 114 72 20 chr6 85536940 85537087 -63979950 - B2_Mm2 SINE B2 -27 168 2 1 1237 517 28 28 0 chr6 85537160 85537231 -63979806 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1237 236 178 0 22 chr6 85537567 85537613 -63979424 + C-rich Low_complexity Low_complexity 2 46 0 1 1237 342 156 0 0 chr6 85537674 85537738 -63979299 + GA-rich Low_complexity Low_complexity 1 64 0 1 1237 270 208 0 0 chr6 85537931 85537979 -63979058 + C-rich Low_complexity Low_complexity 6 53 0 1 1237 195 152 0 0 chr6 85538256 85538302 -63978735 + T-rich Low_complexity Low_complexity 1 46 0 1 1237 251 243 0 54 chr6 85538831 85538905 -63978132 + ID4_ SINE ID 3 72 -11 1 1237 346 239 126 18 chr6 85538919 85539030 -63978007 - MER3 DNA MER1_type -64 145 23 1 1237 198 374 98 11 chr6 85539093 85539322 -63977715 - L2b LINE L2 -4 3383 3138 1 1237 257 278 11 24 chr6 85539395 85539504 -63977533 - BC1_Mm scRNA scRNA -38 114 10 1 1237 362 209 29 125 chr6 85539781 85539825 -63977212 + B1_Mur2 SINE Alu 1 42 -107 1 1237 719 129 362 0 chr6 85539825 85539988 -63977049 - URR1A DNA MER1_type 0 226 5 1 1237 362 209 29 125 chr6 85539988 85540047 -63976990 + B1_Mur2 SINE Alu 43 94 -55 1 1237 617 225 35 21 chr6 85541021 85541166 -63975871 - B1_Mur1 SINE Alu 0 149 3 1 1237 391 196 37 34 chr6 85541326 85541455 -63975582 - B1_Mur2 SINE Alu 0 149 18 1 1237 220 27 26 26 chr6 85541490 85541528 -63975509 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1237 410 171 0 79 chr6 85541612 85541701 -63975336 - B1_Mur3 SINE Alu -62 87 6 1 1237 446 315 48 16 chr6 85541697 85541834 -63975203 - B4A SINE B4 -57 235 94 1 1237 276 30 0 0 chr6 85541834 85541867 -63975170 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1237 446 315 48 16 chr6 85541867 85541916 -63975121 - B4A SINE B4 -199 93 43 1 1237 7951 29 1 0 chr6 85541969 85542879 -63974158 - L1Md_F2 LINE L1 0 6582 5672 1 1237 1338 55 16 0 chr6 85543452 85543635 -63973402 - B2_Mm2 SINE B2 0 195 10 1 1237 705 280 268 0 chr6 85543805 85544136 -63972901 - L1MD LINE L1 -455 5729 5304 1 1237 357 239 32 11 chr6 85544175 85544268 -63972769 - 5S rRNA rRNA -17 104 10 1 1237 279 203 0 0 chr6 85544335 85544394 -63972643 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1237 781 183 126 35 chr6 85544405 85544603 -63972434 - B3 SINE B2 0 216 1 1 1237 246 128 0 0 chr6 85544609 85544648 -63972389 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 1 1237 535 182 11 2 chr6 85544649 85544755 -63972282 - B1_Mur4 SINE Alu -4 116 12 1 1237 251 152 0 0 chr6 85544806 85544852 -63972185 - L1MD LINE L1 -913 5233 5188 1 1237 2661 128 5 15 chr6 85544936 85545347 -63971690 - MTB_Mm LTR MaLR 0 407 1 1 1237 1209 90 6 0 chr6 85545415 85545592 -63971445 - B2_Mm1t SINE B2 0 193 16 1 1237 1063 112 66 22 chr6 85545687 85545870 -63971167 - B2_Mm2 SINE B2 -2 193 3 1 1237 297 263 97 46 chr6 85545870 85546045 -63970992 - L1M3 LINE L1 -971 5169 4986 1 1237 795 222 71 20 chr6 85546054 85546307 -63970730 - L1M3 LINE L1 -1410 4730 4465 1 1237 240 200 34 133 chr6 85546333 85546428 -63970609 - B1_Mur1 SINE Alu -20 129 1 1 1237 306 281 0 0 chr6 85546432 85546521 -63970516 - L1M3 LINE L1 -1650 4490 4402 1 1237 594 143 0 0 chr6 85546537 85546670 -63970367 + (TG)n Simple_repeat Simple_repeat 2 134 0 1 1237 275 189 122 0 chr6 85546673 85546747 -63970290 - B1F2 SINE Alu -42 107 25 1 1237 555 16 0 0 chr6 85546768 85546832 -63970205 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1 1237 3559 10 5 0 chr6 85546832 85547225 -63969812 + MTA_Mm LTR MaLR 2 396 0 1 1237 225 65 0 0 chr6 85547285 85547316 -63969721 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1237 277 338 0 0 chr6 85547415 85547483 -63969554 - B4 SINE B4 -222 70 3 1 1237 511 309 11 43 chr6 85547607 85547793 -63969244 - B3A SINE B2 -18 180 1 1 1237 396 299 35 98 chr6 85547821 85547995 -63969042 - RSINE1 SINE B4 0 165 3 1 1237 943 230 30 15 chr6 85547996 85548199 -63968838 - ID_B1 SINE B4 -6 218 13 1 1237 809 166 7 33 chr6 85548707 85548857 -63968180 + B1_Mus2 SINE Alu 2 147 0 1 1237 627 138 16 0 chr6 85548892 85549015 -63968022 - Lx9 LINE L1 0 7644 7520 1 1237 198 0 0 0 chr6 85549027 85549049 -63967988 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1237 592 170 89 75 chr6 85550266 85550412 -63966625 - B1_Mus1 SINE Alu 0 148 1 1 1237 444 205 98 36 chr6 85550753 85550896 -63966141 - L1M5 LINE L1 -465 5699 5549 1 1237 729 242 122 11 chr6 85551415 85551603 -63965434 - B3 SINE B2 -5 211 3 1 1237 215 175 25 0 chr6 85551645 85551685 -63965352 + T-rich Low_complexity Low_complexity 4 44 0 1 1237 1337 80 0 11 chr6 85551685 85552229 -63964808 + (TTTC)n Simple_repeat Simple_repeat 1 538 0 1 1237 573 126 0 38 chr6 85552231 85552363 -63964674 + CT-rich Low_complexity Low_complexity 2 128 0 1 1237 698 138 16 8 chr6 85552365 85552489 -63964548 - B1_Mur3 SINE Alu -1 148 24 1 1237 298 196 39 164 chr6 85552407 85552511 -63964526 - MT2B LTR ERVL -344 257 167 1 1237 965 181 273 1 chr6 85552862 85553147 -63963890 - MTD LTR MaLR -14 405 59 1 1237 366 73 324 18 chr6 85553740 85553851 -63963186 - B2_Mm2 SINE B2 -4 191 47 1 1237 1124 67 0 0 chr6 85553873 85554023 -63963014 - B2_Mm2 SINE B2 -44 151 2 1 1237 334 283 18 132 chr6 85554122 85554289 -63962748 - ID_B1 SINE B4 -71 153 6 1 1237 271 281 37 0 chr6 85554314 85554396 -63962641 + MER58C DNA MER1_type 122 206 -9 1 1237 23 0 0 0 chr6 85555074 85555097 -63961940 + AT_rich Low_complexity Low_complexity 1 23 0 1 1237 1229 179 0 41 chr6 85555097 85555318 -63961719 - B3 SINE B2 0 216 5 1 1237 306 50 0 0 chr6 85555542 85555582 -63961455 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1237 893 280 32 8 chr6 85555591 85555843 -63961194 - B4 SINE B4 -17 275 18 1 1237 294 29 0 0 chr6 85556305 85556340 -63960697 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1237 743 167 62 48 chr6 85556359 85556504 -63960533 + B1_Mm SINE Alu 1 147 0 1 1237 438 316 46 13 chr6 85556918 85557069 -63959968 + RSINE1 SINE B4 3 158 -7 1 1237 256 329 59 0 chr6 85557240 85557325 -63959712 + MIRb SINE MIR 129 218 -50 1 1237 1143 55 0 7 chr6 85558361 85558507 -63958530 + B1_Mus2 SINE Alu 2 146 -1 2 1237 23 0 0 0 chr6 85558909 85558932 -63958105 + AT_rich Low_complexity Low_complexity 1 23 0 2 1237 615 27 0 0 chr6 85561426 85561499 -63955538 + (TTCTC)n Simple_repeat Simple_repeat 2 74 0 2 1237 721 210 22 0 chr6 85561501 85561639 -63955398 - B1_Mur2 SINE Alu 0 149 9 2 1237 1095 138 21 31 chr6 85561960 85562154 -63954883 - B2_Mm2 SINE B2 -3 192 1 2 1237 180 77 0 0 chr6 85562691 85562717 -63954320 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1237 566 202 9 9 chr6 85562717 85562827 -63954210 - PB1D9 SINE Alu -9 111 2 2 1237 465 312 27 14 chr6 85563012 85563158 -63953879 + B3A SINE B2 44 191 -7 2 1237 386 237 0 0 chr6 85563181 85563257 -63953780 + ID4 SINE ID 2 77 -6 2 1237 23 0 0 0 chr6 85563980 85564003 -63953034 + AT_rich Low_complexity Low_complexity 1 23 0 2 1237 435 38 0 0 chr6 85564003 85564056 -63952981 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1237 587 246 0 25 chr6 85564059 85564180 -63952857 + ID_B1 SINE B4 98 215 -9 2 1237 263 200 60 0 chr6 85564138 85564188 -63952849 + PB1D7 SINE Alu 67 119 -1 2 1237 459 0 0 0 chr6 85564292 85564343 -63952694 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1237 785 226 64 91 chr6 85564707 85564757 -63952280 + B3 SINE B2 4 43 -173 2 1237 771 243 69 10 chr6 85564757 85564961 -63952076 - B3 SINE B2 0 216 1 2 1237 785 226 64 91 chr6 85564961 85565129 -63951908 + B3 SINE B2 44 216 0 2 1237 736 222 208 26 chr6 85565477 85565502 -63951535 + MLT2B3 LTR ERVL 27 51 -503 2 1237 1762 182 89 20 chr6 85565502 85565894 -63951143 - MTD LTR MaLR 0 419 1 2 1237 736 268 172 26 chr6 85565894 85566199 -63950838 + MLT2B3 LTR ERVL 52 381 -139 2 1237 871 141 28 7 chr6 85566336 85566479 -63950558 - B1_Mur2 SINE Alu -2 147 2 2 1237 349 306 52 35 chr6 85566686 85566927 -63950110 + MLT1A0 LTR MaLR 4 281 -84 2 1237 356 346 32 39 chr6 85567058 85567231 -63949806 - RSINE1 SINE B4 -116 176 14 2 1237 1339 292 94 19 chr6 85567260 85567888 -63949149 - L1M2 LINE L1 -1922 4221 3547 2 1237 845 237 33 14 chr6 85567888 85568098 -63948939 + B3 SINE B2 1 214 -2 2 1237 306 264 187 16 chr6 85568120 85568243 -63948794 + RSINE1 SINE B4 3 146 -19 2 1237 2165 133 63 6 chr6 85568246 85568609 -63948428 - ORR1C2 LTR MaLR 0 384 1 2 1237 601 143 210 0 chr6 85568683 85568802 -63948235 + B1_Mus1 SINE Alu 3 146 -2 2 1237 1475 201 31 14 chr6 85568957 85569250 -63947787 + ORR1D1 LTR MaLR 3 300 -74 2 1237 330 255 20 0 chr6 85569335 85569433 -63947604 - L1M2 LINE L1 -3082 3061 2962 2 1237 355 275 10 62 chr6 85574006 85574077 -63942960 + PB1D10 SINE Alu 10 77 -40 2 1237 1682 121 160 0 chr6 85574077 85574358 -63942679 - ORR1A3 LTR MaLR 0 326 1 2 1237 355 283 45 57 chr6 85574358 85574405 -63942632 + PB1D10 SINE Alu 78 132 -17 2 1237 452 290 9 0 chr6 85575190 85575297 -63941740 + PB1D10 SINE Alu 3 110 -7 2 1237 895 246 39 0 chr6 85575445 85575648 -63941389 + B3 SINE B2 2 212 -4 2 1237 346 144 122 10 chr6 85575659 85575757 -63941280 - L1MA6 LINE L1 -474 5826 5718 2 1237 658 259 35 0 chr6 85575898 85576041 -63940996 - RSINE1 SINE B4 -10 155 8 2 1237 1523 32 16 21 chr6 85576060 85576253 -63940784 - B2_Mm1t SINE B2 -1 192 1 2 1237 469 247 66 54 chr6 85576516 85576638 -63940399 - L1MD1 LINE L1 0 6359 6137 2 1237 225 0 0 0 chr6 85576638 85576663 -63940374 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 2 1237 584 186 151 8 chr6 85576663 85576782 -63940255 - B1_Mur3 SINE Alu -12 137 2 2 1237 469 278 42 98 chr6 85576782 85577042 -63939995 - L1MD1 LINE L1 -106 6136 5876 2 1237 261 243 29 0 chr6 85577170 85577240 -63939797 - ID4 SINE ID -11 72 1 2 1237 180 0 0 0 chr6 85577254 85577274 -63939763 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1237 22 35 0 0 chr6 85577316 85577345 -63939692 + AT_rich Low_complexity Low_complexity 1 29 0 2 1237 869 193 0 7 chr6 85577384 85577530 -63939507 - B1_Mus2 SINE Alu -2 145 1 2 1237 577 247 69 32 chr6 85577530 85577718 -63939319 - B3A SINE B2 -3 195 1 2 1237 405 0 0 0 chr6 85580784 85580829 -63936208 + (GGGAGA)n Simple_repeat Simple_repeat 3 47 0 2 1237 314 279 73 135 chr6 85580864 85580973 -63936064 + L1MC4 LINE L1 6713 6815 -1227 2 1237 1332 45 102 0 chr6 85580973 85581149 -63935888 + B2_Mm2 SINE B2 2 195 0 2 1237 314 248 540 80 chr6 85581149 85581357 -63935680 + L1MC4 LINE L1 6792 7099 -896 2 1237 548 276 38 64 chr6 85581389 85581634 -63935403 - ORR1E LTR MaLR -90 280 54 2 1237 639 215 119 273 chr6 85581705 85581743 -63935294 - B3 SINE B2 -2 193 157 2 1237 523 90 22 22 chr6 85581743 85581834 -63935203 + (TATG)n Simple_repeat Simple_repeat 2 92 0 2 1237 639 193 151 7 chr6 85581834 85581970 -63935067 - B3 SINE B2 -50 166 9 2 1237 671 123 52 9 chr6 85582664 85582779 -63934258 + PB1D9 SINE Alu 1 120 0 2 1237 324 111 0 0 chr6 85583127 85583181 -63933856 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 2 1237 792 133 89 0 chr6 85583189 85583324 -63933713 - B1_Mus1 SINE Alu -1 147 1 2 1237 516 32 0 0 chr6 85583659 85583721 -63933316 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1237 246 333 140 55 chr6 85583822 85584042 -63932995 - L1MC4 LINE L1 -212 7830 7583 2 1237 648 238 14 7 chr6 85584042 85584190 -63932847 - B1_Mur2 SINE Alu 0 149 1 2 1237 246 333 140 55 chr6 85584190 85584512 -63932525 - L1MC4 LINE L1 -460 7582 7242 2 1237 315 0 0 0 chr6 85584585 85584620 -63932417 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1237 444 176 40 0 chr6 85584630 85584704 -63932333 - B1_Mur3 SINE Alu -71 78 2 2 1237 334 286 138 32 chr6 85584891 85584985 -63932052 + B1F SINE Alu 1 104 -45 2 1237 751 161 266 6 chr6 85584999 85585168 -63931869 + B3 SINE B2 2 214 -2 2 1237 810 154 14 14 chr6 85585206 85585344 -63931693 + B1_Mur3 SINE Alu 1 138 -11 2 1237 477 0 0 0 chr6 85585871 85585924 -63931113 + (TTTCC)n Simple_repeat Simple_repeat 3 55 0 2 1237 4706 76 15 17 chr6 85586060 85586718 -63930319 - Lx3_Mus LINE L1 0 7009 6353 2 1237 384 133 0 0 chr6 85586806 85586866 -63930171 - Lx3_Mus LINE L1 -1021 5988 5929 2 1237 294 205 0 126 chr6 85586865 85586960 -63930077 + Lx3_Mus LINE L1 5995 6077 -932 2 1237 1300 310 64 18 chr6 85586967 85587878 -63929159 + L1MA4 LINE L1 4937 5930 -370 2 1237 4364 68 47 3 chr6 85587909 85588509 -63928528 + L1Md_F2 LINE L1 5956 6581 -1 2 1237 299 188 186 51 chr6 85588524 85588642 -63928395 + MLT1-int LTR MaLR 393 526 -845 2 1237 21 57 0 0 chr6 85588642 85588677 -63928360 + AT_rich Low_complexity Low_complexity 1 35 0 2 1237 739 94 269 0 chr6 85588762 85588911 -63928126 + Lx3_Mus LINE L1 6821 7009 0 2 1237 700 274 114 5 chr6 85588979 85589199 -63927838 - Lx8 LINE L1 -247 7226 6983 2 1237 763 303 61 116 chr6 85589199 85589606 -63927431 + MLT1A0-int LTR MaLR 498 882 -853 2 1237 810 258 172 0 chr6 85589705 85589984 -63927053 + MLT1A0-int LTR MaLR 1409 1735 0 2 154 855 289 132 7 chr6 85589989 85590292 -63926745 + MLT1A0 LTR MaLR 6 346 -19 2 1238 614 278 82 4 chr6 85590299 85590555 -63926482 - L1MD3 LINE L1 -272 7723 7448 2 1238 1175 35 7 20 chr6 85590796 85590944 -63926093 + B1_Mus2 SINE Alu 2 147 0 2 1238 1116 55 7 7 chr6 85591897 85592044 -63924993 + B1_Mus1 SINE Alu 1 147 -1 2 1238 1315 92 16 0 chr6 85592681 85592865 -63924172 - B2_Mm2 SINE B2 -8 187 1 2 1238 1528 274 135 23 chr6 85593411 85594139 -63922898 + L1M4 LINE L1 701 1509 -5033 2 1238 541 170 241 0 chr6 85594481 85594622 -63922415 - URR1B DNA MER1_type -50 175 1 2 1238 329 293 143 21 chr6 85594842 85595128 -63921909 + L1M4 LINE L1 1540 1860 -4786 2 1238 213 39 0 0 chr6 85595273 85595299 -63921738 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1238 409 244 219 18 chr6 85595532 85595829 -63921208 + L1M4 LINE L1 2605 2965 -3679 2 1238 470 232 7 72 chr6 85596030 85596183 -63920854 - B3 SINE B2 -6 210 68 2 1238 411 91 0 0 chr6 85596213 85596279 -63920758 - B2_Mm1a SINE B2 -1 192 127 2 1238 1178 136 17 0 chr6 85596328 85596505 -63920532 - B2_Mm2 SINE B2 -14 181 2 2 1238 23 33 0 0 chr6 85596515 85596545 -63920492 + AT_rich Low_complexity Low_complexity 1 30 0 2 1238 279 0 0 0 chr6 85596654 85596685 -63920352 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 2 1238 761 219 86 10 chr6 85596812 85597010 -63920027 - B3 SINE B2 -3 213 1 2 1238 21 36 0 0 chr6 85597047 85597075 -63919962 + AT_rich Low_complexity Low_complexity 1 28 0 2 1238 1181 36 0 0 chr6 85597178 85597318 -63919719 + B1_Mus2 SINE Alu 2 141 -6 2 1238 500 56 28 0 chr6 85597320 85597391 -63919646 + (AAATG)n Simple_repeat Simple_repeat 2 74 0 2 1238 363 23 0 0 chr6 85597509 85597553 -63919484 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1238 213 286 17 35 chr6 85597717 85597775 -63919262 + B4 SINE B4 14 70 -222 2 1238 24 0 0 0 chr6 85597820 85597844 -63919193 + AT_rich Low_complexity Low_complexity 1 24 0 2 1238 568 250 17 0 chr6 85597981 85598101 -63918936 - B1F2 SINE Alu -18 131 10 2 1238 273 171 23 68 chr6 85598118 85598206 -63918831 + L1M3 LINE L1 5219 5302 -838 2 1238 213 39 0 0 chr6 85598271 85598297 -63918740 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1238 1139 49 14 0 chr6 85598297 85598441 -63918596 - B1_Mus2 SINE Alu 0 147 2 2 1238 442 290 91 50 chr6 85598454 85598710 -63918327 + L1M3 LINE L1 5400 5678 -511 2 1238 418 125 302 59 chr6 85598846 85598965 -63918072 - B2_Mm2 SINE B2 -1 194 47 2 1238 940 125 104 18 chr6 85599051 85599214 -63917823 - B2_Mm1t SINE B2 -14 179 3 2 1238 226 273 18 18 chr6 85599283 85599339 -63917698 + ID4_ SINE ID 21 76 -7 2 1238 308 250 93 37 chr6 85599386 85599494 -63917543 - ID_B1 SINE B4 -2 222 109 2 1238 252 0 0 0 chr6 85599871 85599899 -63917138 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1238 569 233 0 0 chr6 85599899 85600002 -63917035 - B1_Mus2 SINE Alu -44 103 1 2 1238 255 293 0 99 chr6 85600586 85600677 -63916360 - ID4_ SINE ID 0 83 2 2 1238 249 146 0 0 chr6 85601541 85601589 -63915448 + (A)n Simple_repeat Simple_repeat 1 48 0 2 1238 216 0 0 0 chr6 85601663 85601687 -63915350 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1238 331 21 42 0 chr6 85601689 85601737 -63915300 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1238 24 0 0 0 chr6 85602048 85602072 -63914965 + AT_rich Low_complexity Low_complexity 1 24 0 3 1238 307 367 56 11 chr6 85602084 85602263 -63914774 + MER102c DNA MER1_type 96 282 -49 3 1238 333 62 0 0 chr6 85602392 85602440 -63914597 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 3 1238 339 305 121 13 chr6 85602743 85602982 -63914055 + L1ME3A LINE L1 5295 5559 -614 3 1238 234 338 0 13 chr6 85602989 85603067 -63913970 - ID4_ SINE ID -6 77 1 3 1238 273 289 155 48 chr6 85603081 85603288 -63913749 + L1ME3A LINE L1 5706 5934 -239 3 1238 873 164 52 17 chr6 85603364 85603538 -63913499 - B2_Mm2 SINE B2 -8 187 8 3 1238 1177 62 0 0 chr6 85603631 85603777 -63913260 - B1_Mus1 SINE Alu -2 146 1 3 1238 1593 181 32 0 chr6 85604130 85604407 -63912630 - Lx9 LINE L1 -410 7234 6949 3 1238 1175 154 48 0 chr6 85604421 85604629 -63912408 + Lx9 LINE L1 7262 7479 -165 3 1238 375 23 0 0 chr6 85604630 85604674 -63912363 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1238 392 88 0 14 chr6 85604691 85604760 -63912277 + Lx9 LINE L1 7576 7643 -1 3 1238 472 270 126 50 chr6 85605031 85605230 -63911807 - ID_B1 SINE B4 -10 214 1 3 1238 23 68 0 0 chr6 85605576 85605620 -63911417 + AT_rich Low_complexity Low_complexity 1 44 0 3 1238 2939 110 132 32 chr6 85606560 85607144 -63909893 - L1_Mur2 LINE L1 -1873 4004 3363 3 1238 6773 54 24 0 chr6 85607147 85607992 -63909045 + L1Md_F2 LINE L1 372 1236 -5380 3 1238 13398 56 1 2 chr6 85610666 85612326 -63904711 + L1Md_F2 LINE L1 3929 5586 -297 3 1238 8342 39 1 1 chr6 85612327 85613308 -63903729 + L1Md_F2 LINE L1 5588 6568 -14 3 1238 9794 147 70 45 chr6 85613339 85615063 -63901974 - L1_Mur2 LINE L1 -2505 3372 1558 3 1238 1170 68 7 0 chr6 85615063 85615210 -63901827 - B1_Mus1 SINE Alu 0 148 1 3 1238 9794 147 70 45 chr6 85615210 85615238 -63901799 - L1_Mur2 LINE L1 -4320 1557 1557 3 1238 1051 96 139 0 chr6 85615238 85615404 -63901633 - B2_Mm1t SINE B2 -4 189 1 3 1238 9794 147 70 45 chr6 85615404 85615705 -63901332 - L1_Mur2 LINE L1 -4320 1557 1261 3 1238 207 0 0 0 chr6 85615705 85615728 -63901309 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1238 9794 183 104 56 chr6 85615728 85616061 -63900976 - L1_Mur2 LINE L1 -5724 1260 850 3 1238 21 0 0 0 chr6 85617027 85617048 -63899989 + AT_rich Low_complexity Low_complexity 1 21 0 3 1238 965 217 35 0 chr6 85617477 85617680 -63899357 - B3 SINE B2 -5 211 2 3 1238 448 302 164 22 chr6 85618077 85618345 -63898692 + MER2 DNA MER2_type 40 345 0 3 1238 541 293 81 3 chr6 85618640 85618905 -63898132 + L1M3 LINE L1 4832 5111 -1035 3 1238 826 271 120 40 chr6 85618944 85619211 -63897826 + L1M3 LINE L1 5234 5547 -624 3 1238 2836 104 20 31 chr6 85619211 85619668 -63897369 - RLTR11B LTR ERVK -1 452 1 3 1238 826 269 125 44 chr6 85619668 85619900 -63897137 + L1M3 LINE L1 5548 5780 -391 3 1238 418 280 30 8 chr6 85619930 85620063 -63896974 + B1F2 SINE Alu 12 147 -2 3 1238 248 233 83 33 chr6 85620065 85620185 -63896852 + L1M3 LINE L1 5767 5892 -279 3 1238 296 265 19 19 chr6 85620191 85620295 -63896742 - L1M4 LINE L1 -1343 4803 4700 3 1238 526 143 68 51 chr6 85620434 85620552 -63896485 - ORR1D2 LTR MaLR -4 366 247 3 1238 4430 18 2 0 chr6 85620563 85621055 -63895982 - MT2_Mm LTR ERVL 0 493 1 3 1238 321 0 0 0 chr6 85621055 85621093 -63895944 - MERVL-int LTR ERVL 0 5485 5448 3 1238 362 167 46 35 chr6 85621093 85621180 -63895857 - ORR1A3-int LTR MaLR -1323 640 553 3 1238 6392 25 1 0 chr6 85621180 85621902 -63895135 - MERVL-int LTR ERVL -125 5360 4638 3 1238 29992 9 10 0 chr6 85621895 85625166 -63891871 - MERVL-int LTR ERVL -2181 3304 1 3 1238 4430 18 2 0 chr6 85625166 85625658 -63891379 - MT2_Mm LTR ERVL 0 493 1 3 1238 665 328 16 56 chr6 85625662 85625914 -63891123 - ORR1D2 LTR MaLR -128 242 1 3 1238 25 0 0 0 chr6 85626592 85626617 -63890420 + AT_rich Low_complexity Low_complexity 1 25 0 3 1238 1571 32 16 0 chr6 85626711 85626897 -63890140 - B2_Mm1a SINE B2 -3 190 2 3 1238 476 191 98 18 chr6 85627055 85627167 -63889870 - B1_Mur4 SINE Alu 0 150 30 3 1238 630 266 82 19 chr6 85627174 85627381 -63889656 - ID_B1 SINE B4 0 224 5 3 1238 26 0 0 0 chr6 85629013 85629039 -63887998 + AT_rich Low_complexity Low_complexity 1 26 0 3 1238 411 278 17 17 chr6 85629505 85629622 -63887415 + PB1D10 SINE Alu 1 117 0 3 1238 23 0 0 0 chr6 85629758 85629781 -63887256 + AT_rich Low_complexity Low_complexity 1 23 0 3 1238 672 275 155 96 chr6 85630170 85631300 -63885737 - L1MB5 LINE L1 -160 6014 4842 3 1238 195 42 0 0 chr6 85631300 85631324 -63885713 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1238 672 261 232 39 chr6 85631324 85631457 -63885580 - L1MB5 LINE L1 -1299 4841 4670 3 1238 1272 284 122 37 chr6 85631474 85632425 -63884612 - L1MB5 LINE L1 -1714 4432 3401 3 1238 31 0 0 0 chr6 85632425 85632456 -63884581 + AT_rich Low_complexity Low_complexity 1 31 0 3 1238 257 231 29 44 chr6 85632460 85632528 -63884509 - MT2B LTR ERVL -367 234 168 3 1238 423 237 36 51 chr6 85632723 85632861 -63884176 - B1_Mus2 SINE Alu -1 146 11 3 1238 273 289 108 36 chr6 85632954 85633148 -63883889 - L1M4 LINE L1 -1033 5113 4906 3 1238 1058 245 0 9 chr6 85633247 85633461 -63883576 - B3 SINE B2 0 216 5 3 1238 370 292 56 19 chr6 85633676 85633784 -63883253 - PB1D7 SINE Alu -6 114 3 3 1238 206 289 0 0 chr6 85633959 85634011 -63883026 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1238 4397 158 27 13 chr6 85634247 85634995 -63882042 - Lx4B LINE L1 -58 7000 6243 3 1238 298 136 0 0 chr6 85634981 85635025 -63882012 + Lx4B LINE L1 6168 6211 -847 3 1238 921 93 50 0 chr6 85635311 85635450 -63881587 + B1_Mus2 SINE Alu 2 147 0 3 1238 225 0 0 0 chr6 85635450 85635475 -63881562 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1238 315 49 0 0 chr6 85635475 85635516 -63881521 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1238 213 39 0 0 chr6 85636339 85636365 -63880672 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1238 1050 114 0 0 chr6 85636366 85636524 -63880513 - B2_Mm2 SINE B2 -37 158 1 3 1238 573 213 16 16 chr6 85637656 85637785 -63879252 - B1_Mur4 SINE Alu 0 150 22 3 1238 185 0 0 39 chr6 85637837 85637863 -63879174 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 3 1238 605 216 45 0 chr6 85638160 85638294 -63878743 - ID_B1 SINE B4 0 224 85 3 1238 285 283 65 19 chr6 85638378 85638486 -63878551 + PB1D10 SINE Alu 3 115 -2 3 1238 202 231 0 0 chr6 85639081 85639120 -63877917 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 3 1238 244 258 86 0 chr6 85639323 85639416 -63877621 - L1M4 LINE L1 -628 5556 5456 3 1238 576 75 97 0 chr6 85639538 85639631 -63877406 - B1_Mus2 SINE Alu 0 147 46 3 1238 250 272 133 112 chr6 85640391 85640601 -63876436 - L1MB8 LINE L1 -233 5945 5725 3 1238 780 185 20 0 chr6 85640601 85640747 -63876290 - B1_Mur3 SINE Alu 0 149 1 3 1238 250 272 133 112 chr6 85640747 85640830 -63876207 - L1MB8 LINE L1 -454 5724 5646 3 1238 205 27 26 51 chr6 85640909 85640948 -63876089 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 3 1238 673 98 152 16 chr6 85640948 85641073 -63875964 - B1_Mus1 SINE Alu 0 148 7 3 1238 198 0 0 0 chr6 85641092 85641114 -63875923 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1238 236 257 196 22 chr6 85641254 85641433 -63875604 - L1M4 LINE L1 -696 5468 5259 3 1238 445 297 93 18 chr6 85641890 85642223 -63874814 - L1M4 LINE L1 -1296 4850 4493 3 1238 249 33 0 0 chr6 85642351 85642381 -63874656 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1238 366 255 47 38 chr6 85642533 85642639 -63874398 - PB1D7 SINE Alu -1 119 13 3 1238 369 0 0 0 chr6 85643974 85644015 -63873022 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1238 491 138 41 1 chr6 85644020 85644124 -63872913 - B1_Mur3 SINE Alu -1 146 42 3 1238 216 158 0 0 chr6 85644124 85644162 -63872875 + (TCTCTG)n Simple_repeat Simple_repeat 1 38 0 3 1238 355 175 0 0 chr6 85644193 85644250 -63872787 + (TCTCTG)n Simple_repeat Simple_repeat 3 59 0 3 1238 227 302 90 49 chr6 85645083 85645205 -63871832 + L1M4 LINE L1 5486 5612 -562 3 1238 485 247 152 47 chr6 85645335 85645526 -63871511 + B3 SINE B2 2 212 -4 3 1238 781 232 18 55 chr6 85648760 85648979 -63868058 - B3 SINE B2 -1 215 5 3 1238 333 239 33 41 chr6 85649284 85649406 -63867631 - B1F2 SINE Alu -27 122 2 3 1238 374 250 311 5 chr6 85650245 85650438 -63866599 - ORR1E LTR MaLR -93 266 15 3 1238 1014 306 53 42 chr6 85650488 85651054 -63865983 + L1MA6 LINE L1 5305 5876 -424 3 1238 211 354 60 12 chr6 85651196 85651279 -63865758 + PB1D10 SINE Alu 1 87 -30 3 1238 204 139 0 27 chr6 85651683 85651720 -63865317 + GA-rich Low_complexity Low_complexity 2 37 0 3 1238 518 156 33 0 chr6 85653684 85653774 -63863263 - B3A SINE B2 -104 94 2 3 1238 232 333 0 0 chr6 85653853 85653928 -63863109 + L1M5 LINE L1 5217 5291 -855 3 1238 584 221 102 8 chr6 85655034 85655162 -63861875 + B3 SINE B2 2 141 -75 3 1238 548 214 220 0 chr6 85655439 85655621 -63861416 + B4 SINE B4 1 222 -70 3 1238 294 95 0 0 chr6 85655655 85655697 -63861340 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1238 613 206 0 51 chr6 85655870 85656008 -63861029 - B1_Mur1 SINE Alu -2 147 17 3 1238 1761 48 70 4 chr6 85656728 85656956 -63860081 - L1Md_F2 LINE L1 -12 6570 6328 3 1238 260 273 54 23 chr6 85658063 85658191 -63858846 + MIRb SINE MIR 40 166 -102 3 1238 5149 41 0 0 chr6 85659964 85660569 -63856468 - L1Md_T LINE L1 0 6582 5978 3 1238 6582 25 5 0 chr6 85660569 85661331 -63855706 + L1_Mm LINE L1 4192 4957 -926 3 1238 248 0 0 30 chr6 85661663 85661696 -63855341 + (TTTTC)n Simple_repeat Simple_repeat 1 32 0 3 1238 640 229 0 22 chr6 85661697 85661880 -63855157 + CT-rich Low_complexity Low_complexity 2 180 0 3 1238 198 71 0 0 chr6 85663883 85663911 -63853126 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1238 4772 123 5 44 chr6 85664436 85665248 -63851789 - ETnERV3-int LTR ERVK -5560 1693 186 3 1238 1126 122 16 27 chr6 85665410 85665596 -63851441 - ETnERV3-int LTR ERVK -5622 186 3 3 1238 7114 57 17 3 chr6 85665598 85666479 -63850558 - RLTR13B1 LTR ERVK 0 893 1 3 1238 275 122 20 0 chr6 85666588 85666637 -63850400 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1238 572 273 6 36 chr6 85666689 85666856 -63850181 - B3 SINE B2 -13 203 42 3 1238 1057 190 19 19 chr6 85667153 85667362 -63849675 + B3 SINE B2 3 211 -5 3 1238 1301 136 13 31 chr6 85667591 85667819 -63849218 - URR1A DNA MER1_type 0 226 3 3 1238 415 252 21 49 chr6 85668006 85668148 -63848889 + RMER15 LTR ERVL 350 487 -88 3 1238 596 332 66 40 chr6 85668223 85668618 -63848419 + RMER15-int LTR ERVL 11 415 -4584 3 1238 896 78 16 0 chr6 85668864 85668993 -63848044 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 3 1238 1205 36 0 0 chr6 85669018 85669157 -63847880 - B1_Mus1 SINE Alu -7 141 3 3 1238 1037 89 136 6 chr6 85669187 85669356 -63847681 - B2_Mm1t SINE B2 -2 191 1 3 1238 1939 134 16 25 chr6 85669356 85669653 -63847384 - L1_Mur2 LINE L1 -4315 1562 1265 3 1238 206 32 32 0 chr6 85669653 85669684 -63847353 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1238 1939 164 53 41 chr6 85669684 85670102 -63846935 - L1_Mur2 LINE L1 -5822 1264 835 3 1238 219 36 0 0 chr6 85671389 85671417 -63845620 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1238 600 213 12 148 chr6 85671500 85671743 -63845294 - B3 SINE B2 -5 211 2 4 1238 407 292 174 19 chr6 85672135 85672400 -63844637 + MER2 DNA MER2_type 40 345 0 4 1238 585 286 82 3 chr6 85672694 85672959 -63844078 + L1M3 LINE L1 4832 5111 -1035 4 1238 820 281 121 31 chr6 85672998 85673265 -63843772 + L1M3 LINE L1 5234 5547 -624 4 1238 2843 110 15 26 chr6 85673265 85673722 -63843315 - RLTR11B LTR ERVK -1 452 1 4 1238 820 279 127 34 chr6 85673722 85673949 -63843088 + L1M3 LINE L1 5548 5780 -391 4 1238 410 265 29 22 chr6 85673973 85674112 -63842925 + B1F SINE Alu 8 147 -2 4 1238 251 257 60 26 chr6 85674117 85674233 -63842804 + L1M3 LINE L1 5773 5892 -279 4 1238 245 294 19 19 chr6 85674239 85674343 -63842694 - L1M4 LINE L1 -1343 4803 4700 4 1238 245 233 16 16 chr6 85674347 85674408 -63842629 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 4 1238 1339 234 31 71 chr6 85674478 85674859 -63842178 - ORR1D2 LTR MaLR -4 366 1 4 1238 21 0 0 0 chr6 85675566 85675587 -63841450 + AT_rich Low_complexity Low_complexity 1 21 0 4 1238 1470 40 17 0 chr6 85675694 85675869 -63841168 - B2_Mm1a SINE B2 -14 179 2 4 1238 457 191 103 19 chr6 85676028 85676135 -63840902 - B1_Mur4 SINE Alu -5 145 30 4 1238 619 271 82 19 chr6 85676142 85676349 -63840688 - ID_B1 SINE B4 0 224 5 4 1238 422 266 24 16 chr6 85679141 85679267 -63837770 - L1MB7 LINE L1 -170 6014 5888 4 1238 826 281 169 63 chr6 85679351 85680433 -63836604 - L1MB7 LINE L1 -310 5864 4661 4 1238 1327 280 125 34 chr6 85680445 85681382 -63835655 - L1MB7 LINE L1 -1714 4432 3411 4 1238 33 0 0 0 chr6 85681389 85681422 -63835615 + AT_rich Low_complexity Low_complexity 1 33 0 4 1238 257 231 29 44 chr6 85681426 85681494 -63835543 - MT2B LTR ERVL -367 234 168 4 1238 271 320 119 34 chr6 85681614 85681687 -63835350 - L1M4 LINE L1 -858 5288 5216 4 1238 452 222 64 43 chr6 85681687 85681828 -63835209 - B1_Mus2 SINE Alu -1 146 3 4 1238 271 320 119 34 chr6 85681828 85682107 -63834930 - L1M4 LINE L1 -931 5215 4908 4 1238 1075 241 0 9 chr6 85682206 85682420 -63834617 - B3 SINE B2 0 216 5 4 1238 372 292 56 19 chr6 85682635 85682743 -63834294 - PB1D7 SINE Alu -6 114 3 4 1238 4360 158 27 15 chr6 85683196 85683945 -63833092 - Lx4B LINE L1 -58 7000 6243 4 1238 298 136 0 0 chr6 85683931 85683975 -63833062 + Lx4B LINE L1 6168 6211 -847 4 1238 2606 62 225 0 chr6 85684106 85684462 -63832575 + RLTR10C LTR ERVK 1 436 0 4 1238 1359 87 4 30 chr6 85684472 85684729 -63832308 + MMERVK10C-int LTR ERVK 40 343 -7238 4 1238 652 191 74 29 chr6 85684728 85684970 -63832067 + MMERVK10C-int LTR ERVK 747 952 -6629 4 1238 1073 189 172 44 chr6 85685057 85685461 -63831576 + MMERVK10C-int LTR ERVK 312 688 -5449 4 1238 363 185 123 0 chr6 85685448 85685529 -63831508 + MMERVK10C-int LTR ERVK 1089 1179 -4227 4 1238 421 79 0 0 chr6 85685520 85685583 -63831454 + MMERVK10C-int LTR ERVK 1885 1947 -5634 4 1238 536 68 0 0 chr6 85685589 85685662 -63831375 + MMERVK10C-int LTR ERVK 2552 2624 -4957 4 1238 25261 47 3 0 chr6 85685660 85688629 -63828408 + MMERVK10C-int LTR ERVK 2832 5810 -1771 4 1238 6881 52 30 68 chr6 85688620 85689588 -63827449 + MMERVK10C-int LTR ERVK 6651 7581 0 4 1238 2470 60 239 0 chr6 85689588 85689940 -63827097 + RLTR10C LTR ERVK 1 436 0 4 1238 252 0 0 0 chr6 85689970 85689998 -63827039 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 1238 1139 65 0 0 chr6 85690117 85690256 -63826781 + B1_Mus2 SINE Alu 2 140 -7 4 1238 315 49 0 0 chr6 85690261 85690302 -63826735 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1238 1337 90 5 41 chr6 85691118 85691314 -63825723 - B2_Mm1a SINE B2 -4 189 1 4 1238 571 213 16 16 chr6 85692455 85692584 -63824453 - B1_Mur4 SINE Alu 0 150 22 4 1238 185 0 0 39 chr6 85692636 85692662 -63824375 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 4 1238 605 216 45 0 chr6 85692955 85693089 -63823948 - ID_B1 SINE B4 0 224 85 4 1238 274 292 65 19 chr6 85693173 85693281 -63823756 + PB1D10 SINE Alu 3 115 -2 4 1238 183 80 0 0 chr6 85693876 85693901 -63823136 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1238 244 258 86 0 chr6 85694107 85694200 -63822837 - L1M3 LINE L1 -628 5556 5456 4 1238 512 98 109 0 chr6 85694322 85694414 -63822623 - B1_Mus2 SINE Alu 0 147 46 4 1238 232 266 183 37 chr6 85695174 85695365 -63821672 - L1MB8 LINE L1 -233 5945 5727 4 1238 210 162 0 0 chr6 85695366 85695403 -63821634 + T-rich Low_complexity Low_complexity 1 37 0 4 1238 751 199 20 0 chr6 85695403 85695549 -63821488 - B1_Mur3 SINE Alu 0 149 1 4 1238 238 233 128 0 chr6 85695549 85695635 -63821402 - L1M5 LINE L1 -435 5744 5648 4 1238 634 131 154 8 chr6 85695718 85695841 -63821196 - B1_Mus1 SINE Alu 0 148 8 4 1238 270 0 0 0 chr6 85695860 85695890 -63821147 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1238 231 252 73 18 chr6 85696101 85696210 -63820827 - L1M3 LINE L1 -773 5367 5253 4 1238 342 289 169 38 chr6 85697685 85697922 -63819115 + B4A SINE B4 3 270 -22 4 1238 419 0 0 19 chr6 85697949 85698001 -63819036 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 4 1238 474 151 32 21 chr6 85698012 85698107 -63818930 - B1_Mur3 SINE Alu -12 137 42 4 1238 355 175 0 0 chr6 85698110 85698167 -63818870 + (TCTCTG)n Simple_repeat Simple_repeat 3 59 0 4 1238 227 302 90 49 chr6 85699000 85699122 -63817915 + L1M4 LINE L1 5486 5612 -562 4 1238 485 247 152 47 chr6 85699252 85699443 -63817594 + B3 SINE B2 2 212 -4 4 1238 727 216 57 57 chr6 85702655 85702866 -63814171 - B3 SINE B2 -1 215 5 4 1238 333 239 33 41 chr6 85703171 85703293 -63813744 - B1F2 SINE Alu -27 122 2 4 1238 390 250 311 5 chr6 85704129 85704322 -63812715 - ORR1E LTR MaLR -93 266 15 4 1238 1146 295 86 43 chr6 85704363 85704637 -63812400 + L1MA4 LINE L1 5296 5590 -710 4 1238 234 0 0 0 chr6 85704637 85704663 -63812374 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1238 1146 295 86 43 chr6 85704663 85704945 -63812092 + L1MA4 LINE L1 5591 5876 -424 4 1238 220 341 60 12 chr6 85705087 85705170 -63811867 + PB1D10 SINE Alu 1 87 -30 4 1238 204 139 0 27 chr6 85705573 85705610 -63811427 + GA-rich Low_complexity Low_complexity 2 37 0 4 1238 518 156 33 0 chr6 85707574 85707664 -63809373 - B3A SINE B2 -104 94 2 4 1238 232 333 0 0 chr6 85707739 85707814 -63809223 + L1M5 LINE L1 5217 5291 -855 4 1238 563 228 102 8 chr6 85708929 85709057 -63807980 + B3 SINE B2 2 141 -75 4 1238 560 210 226 0 chr6 85709334 85709515 -63807522 + B4 SINE B4 1 222 -70 4 1238 510 83 0 0 chr6 85709549 85709621 -63807416 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1238 621 199 0 51 chr6 85709794 85709932 -63807105 - B1_Mur1 SINE Alu -2 147 17 4 1238 1761 48 70 4 chr6 85710650 85710878 -63806159 - L1Md_F2 LINE L1 -12 6570 6328 4 1238 260 269 45 27 chr6 85711985 85712113 -63804924 + MIRb SINE MIR 40 166 -102 4 1238 514 0 15 15 chr6 85714193 85714260 -63802777 + (TTTTC)n Simple_repeat Simple_repeat 1 67 0 4 1238 829 140 0 13 chr6 85714262 85714414 -63802623 + CT-rich Low_complexity Low_complexity 3 152 0 4 1238 180 77 0 0 chr6 85716424 85716450 -63800587 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1238 4818 116 6 49 chr6 85716975 85717789 -63799248 - ETnERV3-int LTR ERVK -5560 1693 186 4 1238 1126 122 16 27 chr6 85717951 85718137 -63798900 - ETnERV3-int LTR ERVK -5622 186 3 4 1238 7223 57 10 3 chr6 85718139 85719026 -63798011 - RLTR13B1 LTR ERVK 0 893 1 4 1238 305 140 0 17 chr6 85719135 85719193 -63797844 + (TATG)n Simple_repeat Simple_repeat 2 58 0 4 1238 557 273 6 36 chr6 85719248 85719415 -63797622 - B3 SINE B2 -13 203 42 4 1238 1057 190 19 19 chr6 85719712 85719921 -63797116 + B3 SINE B2 3 211 -5 4 1238 1350 143 4 30 chr6 85720150 85720380 -63796657 - URR1A DNA MER1_type 0 226 3 4 1238 415 252 21 49 chr6 85720564 85720706 -63796331 + RMER15 LTR ERVL 350 487 -88 4 154 589 332 66 40 chr6 85720783 85721178 -63795859 + RMER15-int LTR ERVL 11 415 -4584 4 1239 651 88 0 0 chr6 85721432 85721523 -63795514 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 4 1239 1151 43 7 0 chr6 85721545 85721683 -63795354 - B1_Mus1 SINE Alu -7 141 3 4 1239 1084 77 136 6 chr6 85721712 85721881 -63795156 - B2_Mm1t SINE B2 -2 191 1 4 1239 1973 130 16 30 chr6 85721881 85722182 -63794855 - L1_Mur2 LINE L1 -4315 1562 1262 4 1239 194 0 39 0 chr6 85722182 85722208 -63794829 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1239 1973 165 53 48 chr6 85722208 85722626 -63794411 - L1_Mur2 LINE L1 -5825 1261 835 4 1239 22 0 0 0 chr6 85723006 85723028 -63794009 + AT_rich Low_complexity Low_complexity 1 22 0 4 1239 22 0 0 0 chr6 85723561 85723583 -63793454 + AT_rich Low_complexity Low_complexity 1 22 0 4 1239 895 231 35 0 chr6 85724010 85724213 -63792824 - B3 SINE B2 -5 211 2 4 1239 430 289 174 19 chr6 85724610 85724875 -63792162 + MER2 DNA MER2_type 40 345 0 4 1239 585 285 82 3 chr6 85725170 85725435 -63791602 + L1M3 LINE L1 4832 5111 -1035 4 1239 929 272 121 33 chr6 85725474 85725740 -63791297 + L1M3 LINE L1 5234 5547 -624 4 1239 2796 113 22 22 chr6 85725740 85726192 -63790845 - RLTR11B LTR ERVK -1 452 1 4 1239 929 269 126 36 chr6 85726192 85726421 -63790616 + L1M3 LINE L1 5548 5780 -391 4 1239 416 256 32 8 chr6 85726458 85726584 -63790453 + B1F SINE Alu 19 147 -2 4 1239 240 256 75 25 chr6 85726586 85726706 -63790331 + L1M3 LINE L1 5767 5892 -279 4 1239 296 265 19 19 chr6 85726712 85726816 -63790221 - L1M4 LINE L1 -1343 4803 4700 4 1239 231 250 15 15 chr6 85726820 85726885 -63790152 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 4 1239 1098 266 32 68 chr6 85726955 85727335 -63789702 - ORR1D2 LTR MaLR -4 366 1 4 1239 1454 49 16 16 chr6 85728166 85728351 -63788686 - B2_Mm1a SINE B2 -8 185 1 4 1239 430 200 103 19 chr6 85728505 85728612 -63788425 - B1_Mur4 SINE Alu -5 145 30 4 1239 627 271 82 19 chr6 85728619 85728826 -63788211 - ID_B1 SINE B4 0 224 5 4 1239 26 0 0 0 chr6 85730457 85730483 -63786554 + AT_rich Low_complexity Low_complexity 1 26 0 4 1239 393 289 17 17 chr6 85730946 85731062 -63785975 + PB1D10 SINE Alu 1 116 -1 4 1239 753 278 152 91 chr6 85731614 85732893 -63784144 - L1MB5 LINE L1 -160 6014 4670 4 1239 1299 271 116 42 chr6 85732910 85733866 -63783171 - L1MB5 LINE L1 -1714 4432 3406 4 1239 257 231 29 44 chr6 85733900 85733968 -63783069 - MT2B LTR ERVL -367 234 168 4 1239 459 221 36 51 chr6 85734163 85734301 -63782736 - B1_Mus2 SINE Alu -1 146 11 4 1239 275 284 95 59 chr6 85734394 85734615 -63782422 - L1M4 LINE L1 -1033 5113 4885 4 1239 1089 236 0 9 chr6 85734685 85734899 -63782138 - B3 SINE B2 0 216 5 4 1239 359 302 56 19 chr6 85735114 85735222 -63781815 - PB1D7 SINE Alu -6 114 3 4 1239 198 91 0 0 chr6 85735397 85735430 -63781607 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1239 4393 154 27 15 chr6 85735687 85736436 -63780601 - Lx4B LINE L1 -58 7000 6243 4 1239 319 91 0 0 chr6 85736422 85736466 -63780571 + Lx4B LINE L1 6168 6211 -847 4 1239 198 0 0 0 chr6 85736621 85736643 -63780394 + (TTG)n Simple_repeat Simple_repeat 2 23 0 4 1239 1017 96 0 0 chr6 85736762 85736908 -63780129 + B1_Mus2 SINE Alu 2 147 0 4 1239 333 0 0 0 chr6 85736910 85736947 -63780090 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1239 1306 106 0 36 chr6 85737740 85737936 -63779101 - B2_Mm2 SINE B2 -6 189 1 4 1239 572 205 16 16 chr6 85739075 85739204 -63777833 - B1_Mur4 SINE Alu 0 150 22 5 1239 185 0 0 39 chr6 85739256 85739282 -63777755 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 5 1239 572 224 45 0 chr6 85739580 85739714 -63777323 - ID_B1 SINE B4 0 224 85 5 1239 303 265 0 0 chr6 85739798 85739866 -63777171 + ID_B1 SINE B4 84 151 -73 5 1239 180 176 0 0 chr6 85740502 85740536 -63776501 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 5 1239 244 258 86 0 chr6 85740744 85740837 -63776200 - L1M4 LINE L1 -628 5556 5456 5 1239 576 75 97 0 chr6 85740959 85741052 -63775985 - B1_Mus2 SINE Alu 0 147 46 5 1239 244 276 178 31 chr6 85741811 85742002 -63775035 - L1MB8 LINE L1 -233 5945 5727 5 1239 201 167 0 0 chr6 85742003 85742039 -63774998 + T-rich Low_complexity Low_complexity 1 36 0 5 1239 780 185 20 0 chr6 85742039 85742185 -63774852 - B1_Mur3 SINE Alu 0 149 1 5 1239 216 86 0 0 chr6 85742348 85742383 -63774654 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1239 673 98 152 16 chr6 85742385 85742510 -63774527 - B1_Mus1 SINE Alu 0 148 7 5 1239 198 0 0 0 chr6 85742529 85742551 -63774486 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1239 231 252 73 18 chr6 85742762 85742871 -63774166 - L1M4 LINE L1 -773 5367 5253 5 1239 414 295 99 24 chr6 85743316 85743649 -63773388 - L1M4 LINE L1 -1296 4850 4493 5 1239 249 33 0 0 chr6 85743777 85743807 -63773230 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 1239 361 307 42 34 chr6 85743959 85744077 -63772960 - PB1D7 SINE Alu -1 119 1 5 1239 387 299 156 25 chr6 85745129 85745366 -63771671 + B4A SINE B4 3 270 -22 5 1239 214 143 48 0 chr6 85745391 85745433 -63771604 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 5 1239 526 154 71 2 chr6 85745433 85745570 -63771467 - B1_Mur3 SINE Alu -1 147 5 5 1239 237 278 114 45 chr6 85746372 85746504 -63770533 + L1M4 LINE L1 5472 5612 -562 5 1239 555 217 162 58 chr6 85746634 85746825 -63770212 + B3 SINE B2 2 212 -4 5 1239 769 241 18 55 chr6 85750061 85750280 -63766757 - B3 SINE B2 -1 215 5 5 1239 362 231 33 41 chr6 85750585 85750707 -63766330 - B1F2 SINE Alu -27 122 2 5 1239 374 250 311 5 chr6 85751543 85751736 -63765301 - ORR1E LTR MaLR -93 266 15 5 1239 1184 289 86 43 chr6 85751777 85752051 -63764986 + L1MA4 LINE L1 5296 5590 -710 5 1239 198 0 0 0 chr6 85752051 85752073 -63764964 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1239 1184 289 86 43 chr6 85752073 85752355 -63764682 + L1MA4 LINE L1 5591 5876 -424 5 1239 204 139 0 27 chr6 85752989 85753026 -63764011 + GA-rich Low_complexity Low_complexity 2 37 0 5 1239 512 176 22 0 chr6 85754984 85755075 -63761962 - B3A SINE B2 -104 94 2 5 1239 231 315 47 27 chr6 85755153 85755303 -63761734 + L1M5 LINE L1 5217 5369 -777 5 1239 597 213 102 8 chr6 85756337 85756465 -63760572 + B3 SINE B2 2 141 -75 5 1239 543 204 226 0 chr6 85756742 85756923 -63760114 + B4 SINE B4 1 222 -70 5 1239 429 54 0 0 chr6 85756957 85757013 -63760024 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1239 621 199 0 51 chr6 85757182 85757320 -63759717 - B1_Mur1 SINE Alu -2 147 17 5 1239 1742 57 70 4 chr6 85758040 85758268 -63758769 - L1Md_F2 LINE L1 -12 6570 6328 5 1239 260 284 57 29 chr6 85759371 85759476 -63757561 + MIRb SINE MIR 40 147 -121 5 1239 320 241 24 12 chr6 85762295 85762379 -63754658 + B2_Mm2 SINE B2 3 87 -108 5 1239 9587 119 5 3 chr6 85763452 85765386 -63751651 + L1Md_F LINE L1 675 2613 -3270 5 1239 4934 56 31 0 chr6 85765386 85766007 -63751030 + L1_Mus2 LINE L1 5927 6566 0 5 1239 777 76 0 0 chr6 85766069 85766174 -63750863 + (TC)n Simple_repeat Simple_repeat 2 106 0 5 1239 1345 58 6 23 chr6 85766177 85766354 -63750683 - B2_Mm2 SINE B2 -19 176 3 5 1239 1062 279 98 19 chr6 85766705 85767074 -63749963 + RMER15-int LTR ERVL 1238 1635 -3364 5 1239 308 291 93 0 chr6 85768180 85768313 -63748724 + MIRb SINE MIR 41 189 -79 5 1239 2154 147 30 10 chr6 85768409 85768808 -63748229 + RLTR9B LTR ERVK 2 408 -29 5 1239 4048 269 33 21 chr6 85768818 85770087 -63746950 + ETnERV-int LTR ERVK 2 1351 -1963 5 1239 1156 286 40 48 chr6 85770093 85770596 -63746441 + ETnERV-int LTR ERVK 1884 2382 -3785 5 1239 974 226 15 27 chr6 85771622 85771881 -63745156 - MTD LTR MaLR 0 419 164 5 1239 2874 190 31 25 chr6 85771890 85772493 -63744544 - RLTR18 LTR ERVK -9 607 1 5 1239 1497 197 46 69 chr6 85772499 85772892 -63744145 - ORR1C2 LTR MaLR 0 384 1 5 1239 261 339 25 17 chr6 85772892 85773012 -63744025 + RMER15-int LTR ERVL 2109 2229 -2770 5 1239 265 264 68 27 chr6 85773156 85773230 -63743807 + B3A SINE B2 39 115 -83 5 1239 1170 117 0 0 chr6 85773277 85773456 -63743581 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1239 282 318 88 32 chr6 85774605 85774855 -63742182 - LTR73 LTR ERV1 -204 368 105 5 1239 280 264 135 27 chr6 85775064 85775212 -63741825 + ORR1E LTR MaLR 34 197 -162 5 1239 724 79 10 10 chr6 85775213 85775315 -63741722 - Lx4A LINE L1 -375 6683 6582 5 1239 246 236 43 43 chr6 85775495 85775588 -63741449 + ORR1E LTR MaLR 278 370 -9 5 1239 4997 123 19 17 chr6 85775896 85776675 -63740362 + Lx4A LINE L1 6278 7058 0 5 1239 28 0 0 0 chr6 85776675 85776703 -63740334 + AT_rich Low_complexity Low_complexity 1 28 0 5 1239 360 0 0 0 chr6 85776768 85776808 -63740229 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1239 1060 90 0 0 chr6 85776809 85776943 -63740094 - B1_Mus1 SINE Alu -13 135 2 5 1239 268 91 60 15 chr6 85777948 85778015 -63739022 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1239 387 295 115 9 chr6 85778065 85778178 -63738859 - B4A SINE B4 -36 256 132 5 1239 255 321 55 28 chr6 85778745 85778854 -63738183 + RMER15 LTR ERVL 275 386 -189 5 1239 666 221 71 7 chr6 85779283 85779424 -63737613 - B3 SINE B2 -66 150 1 5 1239 455 182 26 0 chr6 85784062 85784139 -63732898 + B3 SINE B2 128 206 -10 5 1239 324 308 46 18 chr6 85785499 85785608 -63731429 - L1MEg LINE L1 -4091 1993 1882 5 1239 278 106 0 21 chr6 85785968 85786016 -63731021 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 5 1239 486 0 0 0 chr6 85787635 85787689 -63729348 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1239 369 0 0 0 chr6 85787689 85787729 -63729308 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1239 228 263 41 25 chr6 85788176 85788297 -63728740 + Lx8 LINE L1 7351 7473 0 5 1239 1448 260 12 80 chr6 85788672 85789099 -63727938 - RMER19C LTR ERVK 0 611 214 5 1239 450 0 0 0 chr6 85789164 85789214 -63727823 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1239 1047 116 0 0 chr6 85789373 85789520 -63727517 + B2_Mm2 SINE B2 2 148 -47 5 1239 294 128 406 69 chr6 85789523 85789595 -63727442 + B2_Mm2 SINE B2 59 165 -30 5 1239 264 30 0 0 chr6 85789595 85789628 -63727409 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 5 1239 294 128 406 69 chr6 85789628 85789656 -63727381 + B2_Mm2 SINE B2 166 193 -2 5 1239 480 77 0 0 chr6 85789656 85789721 -63727316 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 5 1239 950 158 0 0 chr6 85789735 85789874 -63727163 + B1_Mus2 SINE Alu 2 140 -7 5 1239 181 0 69 0 chr6 85789876 85789905 -63727132 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1239 1280 20 7 0 chr6 85790754 85790900 -63726137 + B1_Mus2 SINE Alu 1 147 0 5 1239 382 301 102 10 chr6 85790971 85791176 -63725861 + RMER12 LTR ERVK 764 987 -335 5 1239 632 250 56 37 chr6 85791127 85791289 -63725748 - B3 SINE B2 -13 203 39 5 1239 1086 180 19 19 chr6 85791584 85791793 -63725244 + B3 SINE B2 3 211 -5 5 1239 1313 147 4 34 chr6 85792026 85792259 -63724778 - URR1A DNA MER1_type 0 226 1 5 1239 400 202 107 53 chr6 85792442 85792573 -63724464 + RMER15 LTR ERVL 350 487 -88 5 1239 598 336 64 44 chr6 85792648 85793053 -63723984 + RMER15-int LTR ERVL 11 423 -4576 5 1239 849 127 0 0 chr6 85793292 85793426 -63723611 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 5 1239 1168 69 14 0 chr6 85793431 85793576 -63723461 - B1_Mus2 SINE Alu 0 147 1 5 1239 1038 132 54 21 chr6 85793666 85793852 -63723185 + B2_Mm2 SINE B2 1 192 -3 5 1239 315 71 0 0 chr6 85794589 85794631 -63722406 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1239 255 61 0 0 chr6 85795366 85795399 -63721638 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1239 213 121 0 0 chr6 85795405 85795438 -63721599 + (AGGGGG)n Simple_repeat Simple_repeat 6 38 0 5 1239 475 351 120 60 chr6 85795786 85795906 -63721131 + RMER15-int LTR ERVL 1730 1847 -3152 5 1239 2567 95 39 71 chr6 85795906 85796313 -63720724 - ORR1B1 LTR MaLR 0 394 1 5 1239 475 351 120 60 chr6 85796313 85796659 -63720378 + RMER15-int LTR ERVL 1848 2224 -2775 5 1239 242 160 20 0 chr6 85796775 85796825 -63720212 + CT-rich Low_complexity Low_complexity 2 52 0 5 1239 244 169 30 30 chr6 85796825 85796892 -63720145 + A-rich Low_complexity Low_complexity 2 68 0 5 1239 180 0 0 0 chr6 85796898 85796918 -63720119 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1239 1305 309 140 30 chr6 85797045 85797786 -63719251 + RMER15-int LTR ERVL 4108 4930 -69 5 1239 321 303 8 24 chr6 85798556 85798681 -63718356 + MIRb SINE MIR 67 189 -79 5 1239 1734 201 158 17 chr6 85800834 85801283 -63715754 + RMER15 LTR ERVL 28 532 -43 5 1239 324 0 0 0 chr6 85801283 85801319 -63715718 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1239 1734 201 158 17 chr6 85801319 85801349 -63715688 + RMER15 LTR ERVL 533 574 -1 5 1239 2161 124 82 6 chr6 85801762 85802103 -63714934 - ORR1B2 LTR MaLR 0 367 1 5 1239 5832 172 51 80 chr6 85802171 85802659 -63714378 + RLTR14-int LTR ERV1 399 845 -4472 5 1239 3385 33 2 8 chr6 85802659 85803057 -63713980 - MTA_Mm LTR MaLR 0 396 1 5 1239 5832 172 51 80 chr6 85803057 85803109 -63713928 + RLTR14-int LTR ERV1 846 912 -4405 5 1239 213 39 0 0 chr6 85803109 85803135 -63713902 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1239 5832 172 51 80 chr6 85803135 85803903 -63713134 + RLTR14-int LTR ERV1 913 1670 -3647 5 1239 473 178 538 6 chr6 85803936 85804096 -63712941 + RLTR14-int LTR ERV1 5073 5317 0 5 1239 1878 190 68 0 chr6 85804119 85804472 -63712565 + RLTR14 LTR ERV1 6 382 0 5 1239 385 257 72 18 chr6 85804815 85804926 -63712111 + PB1D10 SINE Alu 1 117 0 5 1239 1408 109 0 0 chr6 85805313 85805505 -63711532 + B2_Mm2 SINE B2 1 192 -3 5 1239 793 259 17 6 chr6 85805583 85805758 -63711279 - B3 SINE B2 -39 177 1 5 1239 253 158 0 0 chr6 85805894 85805932 -63711105 - B1F SINE Alu -109 40 3 5 1239 304 213 53 21 chr6 85805932 85806117 -63710920 - RMER17D LTR ERVK -388 501 311 5 1239 4331 189 40 15 chr6 85807510 85808310 -63708727 + MERVK26-int LTR ERVK 3750 4569 -2350 6 1239 3358 133 22 0 chr6 85808310 85808815 -63708222 - RMER20A LTR ERVK 0 516 1 6 1239 11650 170 32 6 chr6 85808829 85810807 -63706230 + MERVK26-int LTR ERVK 4888 6917 -2 6 1239 581 298 115 61 chr6 85810810 85811301 -63705736 + RMER20B LTR ERVK 1 566 -61 6 1239 1718 159 75 36 chr6 85811987 85812320 -63704717 + ORR1C2 LTR MaLR 1 346 -38 6 1239 552 30 0 0 chr6 85812386 85812452 -63704585 + (TTCTCC)n Simple_repeat Simple_repeat 2 67 0 6 1239 881 237 36 0 chr6 85813489 85813683 -63703354 + B3 SINE B2 1 201 -15 6 1239 1721 156 259 5 chr6 85813688 85813872 -63703165 + RMER15 LTR ERVL 1 186 -389 6 1239 221 0 35 0 chr6 85813872 85813901 -63703136 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1239 1721 156 259 5 chr6 85813901 85814090 -63702947 + RMER15 LTR ERVL 187 468 -107 6 1239 349 269 72 111 chr6 85815299 85815479 -63701558 - RMER15 LTR ERVL 0 575 403 6 1239 1390 301 89 38 chr6 85815688 85815750 -63701287 - RMER15-int LTR ERVL -38 4961 4899 6 1239 246 32 0 0 chr6 85815750 85815781 -63701256 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1239 1390 301 89 38 chr6 85815781 85816501 -63700536 - RMER15-int LTR ERVL -101 4898 4139 6 1239 1110 258 135 54 chr6 85817284 85817697 -63699340 + RLTR31_Mur LTR ERVK 102 692 0 6 1239 284 358 19 19 chr6 85818580 85818734 -63698303 + MIR SINE MIR 58 211 -51 6 1239 1832 123 18 62 chr6 85819198 85819535 -63697502 - RLTRETN_Mm LTR ERVK 0 322 1 6 1239 748 157 49 14 chr6 85819535 85819677 -63697360 - MMETn-int LTR ERVK 0 4844 4698 6 1239 231 277 55 124 chr6 85819677 85819879 -63697158 - RLTR13D6 LTR ERVK -462 440 253 6 1239 6166 143 34 25 chr6 85819879 85820938 -63696099 - ETnERV-int LTR ERVK -465 2849 1782 6 1239 4436 14 2 12 chr6 85820938 85821436 -63695601 - MT2_Mm LTR ERVL 0 493 1 6 1239 319 0 0 0 chr6 85821436 85821474 -63695563 - MERVL-int LTR ERVL 0 5485 5448 6 1239 403 167 46 35 chr6 85821474 85821561 -63695476 - ORR1A3-int LTR MaLR -1323 640 553 6 1239 48419 16 6 0 chr6 85821561 85826887 -63690150 - MERVL-int LTR ERVL -125 5360 1 6 1239 4436 14 2 12 chr6 85826887 85827385 -63689652 - MT2_Mm LTR ERVL 0 493 1 6 1239 1732 78 0 0 chr6 85827388 85827607 -63689430 - ETnERV2-int LTR ERVK -1471 5935 5717 6 1239 4757 158 24 14 chr6 85827607 85828546 -63688491 - RLTR13A LTR ERVK 0 958 9 6 1239 7337 89 34 9 chr6 85828553 85830512 -63686525 - ETnERV2-int LTR ERVK -1684 5722 2444 6 1239 1508 57 5 5 chr6 85830512 85830705 -63686332 - B2_Mm1a SINE B2 0 193 1 6 1239 6286 120 26 28 chr6 85830705 85832051 -63684986 - ETnERV2-int LTR ERVK -2033 3373 1730 6 1239 7024 93 15 24 chr6 85832060 85833098 -63683939 - ETnERV2-int LTR ERVK -3538 1306 278 6 1239 243 23 44 22 chr6 85833101 85833146 -63683891 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 6 1239 1377 133 26 112 chr6 85833146 85833459 -63683578 - ETnERV2-int LTR ERVK -4557 287 2 6 1239 1765 145 12 67 chr6 85833460 85833801 -63683236 - RLTRETN_Mm LTR ERVK 0 322 1 6 1239 955 77 62 0 chr6 85834098 85834228 -63682809 + B1_Mus2 SINE Alu 2 139 -8 6 1239 235 0 57 0 chr6 85834229 85834264 -63682773 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 6 1239 587 259 143 48 chr6 85834454 85834790 -63682247 - RLTR9A LTR ERVK 0 368 1 6 1239 305 288 35 70 chr6 85834887 85835029 -63682008 - RMER16-int LTR ERVK -20 6522 6386 6 1239 3877 206 9 21 chr6 85835328 85835526 -63681511 - RMER16-int LTR ERVK -1201 6205 6017 6 1239 1804 152 41 85 chr6 85835526 85835937 -63681100 + RLTR9C LTR ERVK 1 393 0 6 1239 9790 168 48 58 chr6 85835937 85837252 -63679785 - RMER16-int LTR ERVK -1583 3823 2489 6 1239 1178 55 14 0 chr6 85837252 85837397 -63679640 + B1_Mus1 SINE Alu 2 148 0 6 1239 9790 168 48 58 chr6 85837397 85837740 -63679297 - RMER16-int LTR ERVK -2918 2488 2186 6 1239 2373 95 48 20 chr6 85837740 85838095 -63678942 + RLTR8 LTR ERVK 1 365 0 6 1239 9790 168 48 58 chr6 85838095 85838481 -63678556 - RMER16-int LTR ERVK -3221 2185 1811 6 1239 1439 78 10 10 chr6 85838481 85838676 -63678361 - B2_Mm2 SINE B2 0 195 1 6 1239 9790 168 48 58 chr6 85838676 85838819 -63678218 - RMER16-int LTR ERVK -3596 1810 1670 6 1239 630 209 87 25 chr6 85838809 85839018 -63678019 - SRV_MM-int LTR ERVK -4160 2007 1798 6 1239 345 181 14 0 chr6 85839019 85839091 -63677946 - RLTR9A LTR ERVK -219 314 242 6 1239 667 196 5 126 chr6 85839091 85839289 -63677748 - ETnERV2-int LTR ERVK -4866 2540 2367 6 1239 1313 20 0 0 chr6 85839671 85839818 -63677219 + B1_Mus2 SINE Alu 1 147 0 6 1239 651 273 69 20 chr6 85839967 85840212 -63676825 - RMER16-int LTR ERVK -3849 3395 3197 6 1239 6077 175 51 74 chr6 85840354 85840551 -63676486 - RMER16-int LTR ERVK -3822 1584 1392 6 1239 242 0 61 0 chr6 85840551 85840584 -63676453 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1239 1183 51 0 0 chr6 85840584 85840721 -63676316 - B1_Mm SINE Alu -9 138 2 6 1239 6077 175 51 74 chr6 85840721 85841061 -63675976 - RMER16-int LTR ERVK -4015 1391 1120 6 1239 1185 43 0 0 chr6 85841061 85841199 -63675838 - B1_Mm SINE Alu -8 139 2 6 1239 6077 175 51 74 chr6 85841199 85842020 -63675017 - RMER16-int LTR ERVK -4287 1119 256 6 1239 271 345 0 0 chr6 85842043 85842156 -63674881 - ETnERV-int LTR ERVK -2855 459 347 6 1239 328 262 47 95 chr6 85842197 85842429 -63674608 - ETnERV-int LTR ERVK -3090 224 4 6 1239 732 252 163 74 chr6 85842434 85842760 -63674277 - RLTR9A LTR ERVK -13 355 1 6 1239 435 222 106 49 chr6 85844315 85844457 -63672580 + ORR1E LTR MaLR 11 160 -199 6 1239 22 0 0 0 chr6 85845619 85845641 -63671396 + AT_rich Low_complexity Low_complexity 1 22 0 6 1239 1098 70 0 21 chr6 85845675 85845820 -63671217 + B1_Mus1 SINE Alu 1 142 -6 6 1239 235 360 45 0 chr6 85846471 85846560 -63670477 - RSINE1 SINE B4 -23 142 50 6 1239 1416 85 21 0 chr6 85848137 85848325 -63668712 + B2_Mm2 SINE B2 1 192 -3 6 1239 349 269 72 111 chr6 85848927 85849107 -63667930 - RMER15 LTR ERVL 0 575 403 6 1239 1653 287 96 41 chr6 85849316 85850096 -63666941 - RMER15-int LTR ERVL -38 4961 4139 6 1239 252 354 8 17 chr6 85851753 85851871 -63665166 + MIRb SINE MIR 77 193 -75 6 1240 272 278 14 14 chr6 85853769 85853842 -63663195 + ORR1D1 LTR MaLR 11 83 -291 6 1240 856 115 62 0 chr6 85855839 85855969 -63661068 + B1_Mus1 SINE Alu 2 139 -9 6 1240 225 0 0 0 chr6 85855969 85855994 -63661043 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1240 912 256 30 13 chr6 85856542 85856772 -63660265 + B4A SINE B4 1 234 -58 6 1240 280 276 143 21 chr6 85858354 85858543 -63658494 - MER67C LTR ERV1 -16 695 484 6 1240 390 243 220 31 chr6 85858885 85859076 -63657961 - RMER15 LTR ERVL -50 525 299 6 1240 284 272 42 47 chr6 85860064 85860216 -63656821 + MLT1J1 LTR MaLR 280 422 -22 6 1240 555 199 204 7 chr6 85861921 85862058 -63654979 + URR1B DNA MER1_type 35 198 -27 6 1240 234 0 0 0 chr6 85862249 85862275 -63654762 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1240 352 243 37 18 chr6 85863404 85863513 -63653524 - RSINE1 SINE B4 -16 149 39 6 1240 2489 47 0 3 chr6 85863606 85863937 -63653100 + L1_Mus1 LINE L1 6260 6567 0 6 1240 259 234 85 61 chr6 85864252 85864334 -63652703 + B1F1 SINE Alu 16 99 -50 6 1240 190 267 36 96 chr6 85865031 85865114 -63651923 - L4 LINE RTE -497 1532 1455 6 1240 666 105 9 37 chr6 85866490 85866599 -63650438 - B1_Mus2 SINE Alu 0 147 42 6 1240 362 102 0 0 chr6 85866709 85866758 -63650279 + B1_Mus1 SINE Alu 3 51 -97 6 1240 249 262 0 16 chr6 85866758 85866771 -63650266 + B4 SINE B4 88 148 -144 6 1240 22 0 0 0 chr6 85866846 85866868 -63650169 + AT_rich Low_complexity Low_complexity 1 22 0 6 1240 329 119 2 0 chr6 85866978 85867036 -63650001 + L1_Mur2 LINE L1 3842 3934 -2212 6 1240 6570 73 12 0 chr6 85867036 85868513 -63648524 - L1_Mus1 LINE L1 0 6582 5046 6 1240 218 204 54 36 chr6 85868532 85868588 -63648449 - L2 LINE L2 -826 2593 2537 6 1240 578 248 0 8 chr6 85868658 85868776 -63648261 + B3 SINE B2 52 168 -48 6 1240 880 202 43 29 chr6 85869091 85869300 -63647737 - B3 SINE B2 -2 214 3 6 1240 341 253 12 25 chr6 85869322 85869403 -63647634 - ID_B1 SINE B4 -2 222 143 6 1240 866 195 0 20 chr6 85869888 85870040 -63646997 - B1_Mur2 SINE Alu 0 149 1 6 1240 633 265 40 0 chr6 85871457 85871608 -63645429 - ID_B1 SINE B4 -67 157 1 6 1240 640 261 50 71 chr6 85871655 85871853 -63645184 - B3A SINE B2 -4 194 1 6 1240 1495 54 5 5 chr6 85872191 85872377 -63644660 - B2_Mm2 SINE B2 -9 186 1 6 1240 1226 218 40 40 chr6 85872405 85872677 -63644360 - Lx6 LINE L1 -16 7444 7173 6 1240 235 288 37 12 chr6 85872903 85872984 -63644053 + ID4_ SINE ID 1 83 0 6 1240 180 0 0 0 chr6 85873429 85873449 -63643588 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 6 1240 631 244 255 54 chr6 85873569 85873902 -63643135 + MTC LTR MaLR 8 407 -14 6 1240 1464 79 5 0 chr6 85873912 85874102 -63642935 + B2_Mm1t SINE B2 2 192 -1 6 1240 866 206 83 172 chr6 85874777 85875197 -63641840 - ORR1D1 LTR MaLR 0 384 4 6 1240 648 252 19 30 chr6 85875092 85875278 -63641759 + MT2A LTR ERVL 1 140 -444 6 1240 479 189 10 21 chr6 85875251 85875348 -63641689 + MT2A LTR ERVL 87 182 -351 6 1240 3893 163 224 20 chr6 85875345 85876210 -63640827 - MTC-int LTR MaLR -216 1042 1 6 1240 2446 137 24 38 chr6 85876214 85876631 -63640406 - MTC LTR MaLR -8 413 3 6 1240 532 189 11 0 chr6 85876631 85876724 -63640313 - ORR1D1 LTR MaLR -280 94 1 6 1240 190 281 53 0 chr6 85876875 85876932 -63640105 - MIR SINE MIR -158 104 45 6 1240 214 266 46 15 chr6 85877902 85877967 -63639070 - L4 LINE RTE -587 1442 1376 6 1240 674 228 90 35 chr6 85878191 85878391 -63638646 + B3 SINE B2 2 212 -4 6 1240 1253 48 0 0 chr6 85878878 85879025 -63638012 + B1_Mus2 SINE Alu 1 147 0 6 1240 485 277 43 7 chr6 85879045 85879183 -63637854 + B1F SINE Alu 1 143 -6 6 1240 327 339 16 25 chr6 85879187 85879308 -63637729 - MIR SINE MIR -68 194 75 6 1240 442 335 42 42 chr6 85879384 85879599 -63637438 - MER58A DNA MER1_type 0 224 10 6 1240 2145 120 3 66 chr6 85879981 85880329 -63636708 + ORR1A3 LTR MaLR 1 326 0 6 1240 543 16 0 0 chr6 85880496 85880560 -63636477 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1240 1773 117 0 4 chr6 85881243 85881493 -63635544 - RLTR22_Mur LTR ERVK -5 1843 1595 6 1240 2595 86 35 13 chr6 85881521 85881898 -63635139 - RLTR22_Mus LTR ERVK -1423 385 1 6 1240 229 297 52 43 chr6 85882503 85882619 -63634418 + MLT1J1 LTR MaLR 306 422 -22 6 1240 1142 22 15 0 chr6 85883720 85883855 -63633182 + B1_Mus1 SINE Alu 2 138 -10 6 1240 212 194 0 0 chr6 85883868 85883904 -63633133 + A-rich Low_complexity Low_complexity 1 36 0 6 1240 1293 170 14 0 chr6 85885634 85885852 -63631185 - URR1B DNA MER1_type -4 221 1 6 1240 343 298 38 19 chr6 85886150 85886256 -63630781 - PB1D10 SINE Alu 0 117 10 6 1240 903 131 38 20 chr6 85886265 85886452 -63630585 - B3 SINE B2 -4 191 1 6 1240 247 273 18 0 chr6 85887928 85887983 -63629054 - ID2 SINE ID -22 61 6 6 1240 308 137 37 19 chr6 85889374 85889428 -63627609 + B4 SINE B4 27 81 -84 6 1240 576 0 0 0 chr6 85889428 85889492 -63627545 + (TAAAA)n Simple_repeat Simple_repeat 3 66 0 6 1240 1459 59 37 21 chr6 85889503 85889694 -63627343 + B2_Mm2 SINE B2 1 194 -1 6 1240 419 296 51 15 chr6 85889728 85889865 -63627172 + B4 SINE B4 88 229 -63 6 1240 291 253 11 78 chr6 85889862 85889876 -63627161 + MT2B LTR ERVL 156 163 -438 6 1240 458 138 100 0 chr6 85889876 85889956 -63627081 + B1_Mur3 SINE Alu 1 88 -61 6 1240 591 142 0 41 chr6 85889959 85890014 -63627023 + polypyrimidine Low_complexity Low_complexity 88 141 0 7 1240 1190 90 0 25 chr6 85890014 85890378 -63626659 + (TTC)n Simple_repeat Simple_repeat 1 354 0 7 1240 591 142 0 41 chr6 85890378 85890467 -63626570 + polypyrimidine Low_complexity Low_complexity 3 87 0 7 1240 1174 110 6 0 chr6 85890467 85890630 -63626407 - B2_Mm1t SINE B2 -28 165 2 7 1240 1198 74 0 0 chr6 85890658 85890806 -63626231 - B1_Mus1 SINE Alu 0 148 1 7 1240 1845 122 210 14 chr6 85890851 85891237 -63625800 - ORR1B1 LTR MaLR -5 389 1 7 1240 400 263 41 31 chr6 85891314 85891412 -63625625 + B4 SINE B4 125 223 -69 7 1240 265 268 27 40 chr6 85891417 85891438 -63625599 + ID SINE ID 64 83 -141 7 1240 356 167 33 0 chr6 85891438 85891498 -63625539 + PB1D9 SINE Alu 1 62 -58 7 1240 4282 12 25 0 chr6 85891525 85892006 -63625031 + MT2_Mm LTR ERVL 1 493 0 7 1240 606 14 0 0 chr6 85892145 85892216 -63624821 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1240 687 291 138 24 chr6 85892231 85892657 -63624380 + L1ME1 LINE L1 5535 6009 -170 7 1240 324 256 157 56 chr6 85893147 85893325 -63623712 - LTR16D2 LTR ERVL -12 639 414 7 1240 192 40 0 0 chr6 85893539 85893564 -63623473 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 7 1240 607 195 59 0 chr6 85893625 85893743 -63623294 - B1_Mus1 SINE Alu 0 148 24 7 1240 286 339 9 0 chr6 85894323 85894438 -63622599 + PB1 SINE Alu 1 116 -11 7 1240 330 217 43 0 chr6 85894538 85894607 -63622430 + ID4_ SINE ID 3 74 -9 7 1240 659 257 124 129 chr6 85895212 85895592 -63621445 + MLT1B LTR MaLR 4 381 -9 7 1240 352 241 59 99 chr6 85895850 85896002 -63621035 + HAL1 LINE L1 2217 2362 -145 7 1240 333 327 75 37 chr6 85897922 85898096 -63618941 + B4A SINE B4 1 159 -65 7 1240 1890 93 14 18 chr6 85898096 85898381 -63618656 + L1_Mus1 LINE L1 6234 6517 -50 7 1240 627 14 0 0 chr6 85898409 85898481 -63618556 + (GAAAA)n Simple_repeat Simple_repeat 4 75 0 7 1240 194 247 21 138 chr6 85898487 85898581 -63618456 - MIRb SINE MIR -143 125 43 7 1240 505 278 57 87 chr6 85898648 85898877 -63618160 + MLT2B3 LTR ERVL 8 229 -325 7 1240 405 229 220 0 chr6 85899123 85899241 -63617796 - ID_B1 SINE B4 -3 221 78 7 1240 279 301 14 0 chr6 85900281 85900354 -63616683 - ID4_ SINE ID -9 74 1 7 1240 341 330 116 28 chr6 85900588 85900769 -63616268 + L1M5 LINE L1 3681 3877 -2269 7 1240 1143 75 0 13 chr6 85901589 85901738 -63615299 + B1_Mm SINE Alu 1 147 0 7 1240 222 118 0 0 chr6 85901738 85901772 -63615265 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1240 228 100 0 0 chr6 85901955 85901995 -63615042 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 7 1240 291 28 0 0 chr6 85902232 85902268 -63614769 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1240 592 260 63 42 chr6 85903077 85903266 -63613771 + B3A SINE B2 5 197 -1 7 1240 741 236 26 0 chr6 85903848 85904039 -63612998 + B3A SINE B2 1 196 -2 7 1240 305 228 186 7 chr6 85904162 85904358 -63612679 + L1MC5 LINE L1 6633 6890 -895 7 1240 661 221 19 49 chr6 85904381 85904543 -63612494 + Lx8 LINE L1 7180 7336 -137 7 1240 631 258 77 63 chr6 85904557 85904745 -63612292 + B3 SINE B2 2 193 -23 7 1240 1146 69 7 0 chr6 85904745 85904890 -63612147 + B1_Mus2 SINE Alu 2 147 0 7 1240 631 258 77 63 chr6 85904890 85904908 -63612129 + B3 SINE B2 194 211 -5 7 1240 654 198 0 0 chr6 85905296 85905412 -63611625 + PB1D10 SINE Alu 1 116 -1 7 1240 334 268 91 20 chr6 85905556 85905655 -63611382 + PB1D10 SINE Alu 4 109 -8 7 1240 730 267 36 0 chr6 85905697 85905892 -63611145 + B3 SINE B2 15 216 0 7 1240 643 185 92 0 chr6 85905910 85906029 -63611008 + ID_B1 SINE B4 78 207 -17 7 1240 1173 35 0 0 chr6 85906032 85906174 -63610863 + (GAAA)n Simple_repeat Simple_repeat 1 142 0 7 1240 422 219 9 0 chr6 85906175 85906280 -63610757 + GA-rich Low_complexity Low_complexity 5 110 0 7 1240 420 298 10 0 chr6 85906285 85906389 -63610648 + PB1D10 SINE Alu 5 109 -8 7 1240 265 330 20 20 chr6 85906412 85906511 -63610526 + G-rich Low_complexity Low_complexity 3 101 0 7 1240 598 267 14 0 chr6 85906867 85907013 -63610024 + B1_Mur1 SINE Alu 2 149 0 7 1240 1015 215 34 0 chr6 85907244 85907453 -63609584 + B3 SINE B2 1 216 0 7 1240 1422 252 67 48 chr6 85907469 85907993 -63609044 + Lx9 LINE L1 6954 7487 -157 7 1240 26 0 0 0 chr6 85908065 85908091 -63608946 + AT_rich Low_complexity Low_complexity 1 26 0 7 1240 315 322 16 8 chr6 85908106 85908228 -63608809 + L1MB4 LINE L1 5916 6038 -142 7 1240 399 270 0 43 chr6 85908317 85908410 -63608627 - PB1D10 SINE Alu -27 90 2 7 1240 305 341 61 57 chr6 85909610 85909840 -63607197 + L1MCa LINE L1 1774 2004 -4504 7 1240 392 57 0 0 chr6 85910311 85910364 -63606673 - B1_Mus2 SINE Alu 0 147 95 7 1240 23 54 0 0 chr6 85910473 85910510 -63606527 + AT_rich Low_complexity Low_complexity 1 37 0 7 1240 4036 66 2 19 chr6 85911799 85912327 -63604710 - MURVY-LTR LTR ERV1 0 519 1 7 1240 1161 75 0 0 chr6 85912653 85912799 -63604238 - B1_Mus1 SINE Alu 0 148 3 7 1240 1293 102 15 41 chr6 85912805 85913000 -63604037 - B2_Mm2 SINE B2 -5 190 1 7 1240 549 261 37 15 chr6 85913063 85913199 -63603838 - B1_Mur1 SINE Alu 0 149 11 7 1240 319 321 0 70 chr6 85913105 85913219 -63603818 - MT2B LTR ERVL -341 260 155 7 1240 1239 72 36 0 chr6 85914729 85914896 -63602141 + B2_Mm1t SINE B2 2 174 -19 7 1240 4021 60 77 6 chr6 85915710 85916233 -63600804 - LTRIS2 LTR ERV1 0 564 5 7 1240 3583 188 82 134 chr6 85916342 85916444 -63600593 - RMER1A Other Other -2 1028 875 7 1240 291 54 0 0 chr6 85916444 85916481 -63600556 + (CCAA)n Simple_repeat Simple_repeat 3 39 0 7 1240 3583 195 78 123 chr6 85916481 85917572 -63599465 - RMER1A Other Other -156 874 2 7 1240 3917 47 19 0 chr6 85917572 85918038 -63598999 + MT2C_Mm LTR ERVL 1 475 0 7 1240 1696 278 14 25 chr6 85918038 85918527 -63598510 - RMER1B Other Other -616 450 17 7 1240 409 331 30 80 chr6 85919187 85919387 -63597650 + B4 SINE B4 101 290 -2 7 1240 1193 54 7 0 chr6 85919714 85919853 -63597184 + B1_Mus1 SINE Alu 1 140 -8 7 1240 207 0 0 0 chr6 85919853 85919876 -63597161 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 7 1240 694 290 137 45 chr6 85920397 85920819 -63596218 + RLTR12B LTR ERVK 12 472 -56 7 1240 284 308 112 30 chr6 85920869 85921003 -63596034 - MLT-int LTR MaLR -192 1543 1399 7 1240 262 344 114 18 chr6 85921009 85921175 -63595862 - MLT-int LTR MaLR -457 1278 1097 7 1240 974 304 102 28 chr6 85921264 85921657 -63595380 - MLT2B3 LTR ERVL -81 473 52 7 1240 1305 97 16 0 chr6 85922004 85922189 -63594848 + B2_Mm2 SINE B2 1 188 -7 7 1240 336 306 0 36 chr6 85922411 85922523 -63594514 + PB1D7 SINE Alu 10 117 -3 7 1240 396 0 0 0 chr6 85923789 85923833 -63593204 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1240 1122 94 72 0 chr6 85924515 85924699 -63592338 - Lx5 LINE L1 -1024 5976 5775 7 1240 4004 152 77 14 chr6 85924701 85924802 -63592235 + MERVL_2A-int LTR ERVL 67 184 -5577 7 1240 1645 172 39 92 chr6 85924802 85925217 -63591820 - RLTR9C LTR ERVK 0 393 1 7 1240 4004 152 77 14 chr6 85925217 85925827 -63591210 + MERVL_2A-int LTR ERVL 185 823 -4938 7 1240 237 238 0 0 chr6 85926207 85926287 -63590750 + (TA)n Simple_repeat Simple_repeat 2 81 0 7 1240 904 131 19 70 chr6 85927528 85927839 -63589198 + ORR1D1 LTR MaLR 3 375 -3 7 1240 837 144 111 0 chr6 85928168 85928321 -63588716 + MTC LTR MaLR 1 170 -251 7 1240 531 231 72 166 chr6 85928325 85928379 -63588658 - RLTR11A2 LTR ERVK -8 445 393 7 1240 225 0 0 0 chr6 85928379 85928404 -63588633 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 7 1240 531 231 72 166 chr6 85928404 85928614 -63588423 - RLTR11A2 LTR ERVK -61 392 207 7 1240 779 269 22 52 chr6 85928597 85928629 -63588408 - RLTR11A2 LTR ERVK -268 259 228 7 1240 2408 139 31 109 chr6 85928629 85929152 -63587885 + RLTR45 LTR ERVK 1 482 0 7 1240 779 269 22 52 chr6 85929152 85929386 -63587651 - RLTR11A2 LTR ERVK -300 227 1 7 1240 1045 182 140 13 chr6 85929386 85929614 -63587423 + MTC LTR MaLR 165 421 0 7 1240 7459 73 18 3 chr6 85929682 85931318 -63585719 - L1Md_F2 LINE L1 0 6582 4916 7 1240 11564 67 6 10 chr6 85931308 85933495 -63583542 - L1Md_F2 LINE L1 -3064 2819 639 7 1240 1097 99 0 7 chr6 85933491 85933644 -63583393 - L1Md_F2 LINE L1 -6131 507 356 7 1240 2477 116 14 0 chr6 85933922 85934275 -63582762 + ORR1B2 LTR MaLR 2 359 -8 7 1240 295 311 74 59 chr6 85934471 85934673 -63582364 + 7SK RNA RNA 6 210 -121 7 1240 205 143 41 0 chr6 85934835 85934884 -63582153 + A-rich Low_complexity Low_complexity 1 51 0 7 1240 519 199 200 21 chr6 85936545 85936606 -63580431 + URR1B DNA MER1_type 1 76 -149 7 1240 1266 34 0 0 chr6 85936606 85936753 -63580284 + B1_Mus2 SINE Alu 1 147 0 7 1240 519 199 200 21 chr6 85936753 85936881 -63580156 + URR1B DNA MER1_type 77 223 -2 7 1240 660 300 15 87 chr6 85937398 85937664 -63579373 + B4 SINE B4 42 288 -4 7 1240 271 365 58 0 chr6 85938704 85938841 -63578196 - MLT-int LTR MaLR -192 1543 1399 7 1240 376 314 103 34 chr6 85938846 85939021 -63578016 - MLT-int LTR MaLR -457 1278 1092 7 1240 506 380 133 32 chr6 85939004 85939379 -63577658 - MLT2B3 LTR ERVL -89 465 53 7 1240 321 279 77 0 chr6 85939912 85940016 -63577021 + PB1D9 SINE Alu 9 120 0 7 1240 278 298 17 17 chr6 85942226 85942342 -63574695 + PB1D10 SINE Alu 2 117 0 7 1240 672 286 164 31 chr6 85943900 85944290 -63572747 + RLTR28B LTR ERVL 2 443 -38 7 1240 1187 54 7 0 chr6 85944649 85944796 -63572241 - B1_Mus1 SINE Alu 0 148 1 7 1240 476 238 57 75 chr6 85945532 85945585 -63571452 + MT2B2 LTR ERVL 110 159 -425 7 1240 606 211 46 0 chr6 85945585 85945694 -63571343 + B1_Mus2 SINE Alu 3 116 -31 7 1240 2964 75 45 5 chr6 85945714 85946142 -63570895 + RMER16 LTR ERVK 1 533 0 7 1240 2710 140 73 5 chr6 85946142 85946553 -63570484 + ORR1A4-int LTR MaLR 880 1320 -643 7 1240 2678 109 137 15 chr6 85946553 85947027 -63570010 - RLTR47_MM LTR ERV1 0 532 1 7 1240 3135 123 70 139 chr6 85947027 85947723 -63569314 + ORR1A4-int LTR MaLR 1316 1963 0 7 1240 1774 144 27 53 chr6 85947723 85948061 -63568976 + ORR1A4 LTR MaLR 1 329 0 7 1240 265 320 184 55 chr6 85948348 85948566 -63568471 - MLT-int LTR MaLR -519 1216 971 8 1240 626 339 163 17 chr6 85948566 85948971 -63568066 - MLT2B3 LTR ERVL -58 496 33 8 1240 2790 125 46 19 chr6 85949251 85949725 -63567312 + MERVL_2A-int LTR ERVL 5131 5617 -144 8 1240 314 205 58 35 chr6 85949725 85949811 -63567226 + ORR1A3-int LTR MaLR 552 639 -1324 8 1240 264 133 0 0 chr6 85949811 85949856 -63567181 + MERVL_2A-int LTR ERVL 5706 5750 -11 8 1240 1188 221 159 139 chr6 85949858 85949932 -63567105 + MT2A LTR ERVL 1 70 -463 8 1240 3141 17 0 0 chr6 85949932 85950276 -63566761 + ORR1A0 LTR MaLR 1 344 -2 8 1240 1188 221 159 139 chr6 85950276 85950653 -63566384 + MT2A LTR ERVL 71 461 -72 8 1240 239 177 16 0 chr6 85950670 85950732 -63566305 + (CATA)n Simple_repeat Simple_repeat 2 64 0 8 1240 285 29 0 0 chr6 85950781 85950815 -63566222 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1240 371 339 61 26 chr6 85950983 85951060 -63565977 + MER20B DNA MER1_type 540 629 -154 8 1240 4039 44 19 51 chr6 85951060 85951589 -63565448 + RLTR1B LTR ERV1 1 512 0 8 1240 371 339 61 26 chr6 85951589 85951741 -63565296 + MER20B DNA MER1_type 630 777 -6 8 1240 231 275 29 0 chr6 85952271 85952340 -63564697 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 8 1240 1436 78 16 10 chr6 85952684 85952878 -63564159 - B2_Mm2 SINE B2 0 195 1 8 1240 2514 202 89 46 chr6 85954422 85955373 -63561664 + RodERV21-int LTR ERV1 11 1874 -3117 8 1240 492 171 0 0 chr6 85955369 85955457 -63561580 + RodERV21-int LTR ERV1 3848 3935 -1056 8 1240 514 256 120 42 chr6 85955459 85955651 -63561386 + RMER21A LTR ERV1 483 689 -258 8 1240 370 277 201 0 chr6 85956780 85956939 -63560098 - B3A SINE B2 -7 191 1 8 1240 207 229 83 0 chr6 85956972 85957020 -63560017 + L3 LINE CR1 4266 4317 -172 8 1240 201 74 0 0 chr6 85957084 85957111 -63559926 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1240 379 277 30 0 chr6 85957163 85957264 -63559773 + PB1D10 SINE Alu 5 108 -9 8 1240 592 254 76 20 chr6 85957578 85957775 -63559262 + ID_B1 SINE B4 6 213 -11 8 1240 414 0 0 0 chr6 85957934 85957980 -63559057 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1240 443 214 0 115 chr6 85959492 85959618 -63557419 - PB1D9 SINE Alu 0 120 9 8 1240 562 256 24 24 chr6 85959803 85959967 -63557070 - RSINE1 SINE B4 0 165 2 8 1240 1235 266 116 37 chr6 85959977 85960493 -63556544 - Lx8 LINE L1 -137 7336 6780 8 1240 395 258 134 27 chr6 85961326 85961513 -63555524 + B3 SINE B2 2 208 -8 8 1240 256 257 59 6 chr6 85962031 85962136 -63554901 + B1F SINE Alu 2 144 -5 8 1240 438 20 0 0 chr6 85962277 85962328 -63554709 + (TC)n Simple_repeat Simple_repeat 2 52 0 8 1240 1121 95 0 0 chr6 85962331 85962479 -63554558 - B1_Mus1 SINE Alu 0 148 1 8 1240 237 296 74 93 chr6 85962490 85962598 -63554439 - B1F1 SINE Alu -7 142 37 8 1240 292 328 25 41 chr6 85963441 85963562 -63553475 - RSINE1 SINE B4 -4 161 43 8 1240 426 254 356 19 chr6 85963857 85964062 -63552975 - B4 SINE B4 -18 274 1 8 1240 492 234 100 21 chr6 85964533 85964673 -63552364 + ID_B1 SINE B4 72 222 -2 8 1240 309 262 68 127 chr6 85965287 85965405 -63551632 + PB1 SINE Alu 6 126 -1 8 1240 306 73 0 0 chr6 85965410 85965451 -63551586 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8 1240 304 274 37 28 chr6 85966561 85966670 -63550367 - RSINE1 SINE B4 0 165 56 8 1240 661 206 60 80 chr6 85967686 85967886 -63549151 - B3A SINE B2 -1 197 2 8 1240 398 341 0 29 chr6 85967934 85968073 -63548964 - RSINE1 SINE B4 -29 136 2 8 1240 392 267 0 0 chr6 85968769 85968855 -63548182 + PB1D7 SINE Alu 35 120 0 8 1240 180 315 0 0 chr6 85968878 85968932 -63548105 - MIRb SINE MIR -10 258 205 8 1240 1130 211 257 18 chr6 85969911 85970249 -63546788 + MTD LTR MaLR 1 419 0 8 1240 313 266 70 60 chr6 85970273 85970373 -63546664 - B1F SINE Alu -36 113 13 8 1240 777 244 12 0 chr6 85971109 85971269 -63545768 - B3A SINE B2 -36 162 1 8 1240 477 355 86 14 chr6 85971514 85971734 -63545303 + MIR SINE MIR 11 246 -16 8 1240 821 267 43 5 chr6 85971935 85972142 -63544895 + B3 SINE B2 1 215 -1 8 1240 459 261 8 17 chr6 85972553 85972670 -63544367 - PB1D10 SINE Alu 0 117 2 8 1240 300 202 137 29 chr6 85972872 85972974 -63544063 - PB1D10 SINE Alu -4 113 1 8 1240 304 262 110 18 chr6 85972974 85973003 -63544034 - ID_B1 SINE B4 -134 90 52 8 1240 372 233 0 24 chr6 85973043 85973142 -63543895 - B4A SINE B4 -72 93 1 8 1240 391 301 171 54 chr6 85974180 85974538 -63542499 - MLT1F2 LTR MaLR -35 645 289 8 1240 1959 183 90 3 chr6 85974581 85974959 -63542078 + MTD LTR MaLR 1 411 -8 8 1240 2408 134 41 18 chr6 85974969 85975357 -63541680 + MTB_Mm LTR MaLR 3 399 -8 8 1240 352 287 0 115 chr6 85976022 85976144 -63540893 - B1F SINE Alu -41 108 1 8 1240 681 278 40 20 chr6 85976197 85976395 -63540642 + MIR SINE MIR 25 226 -36 8 1240 1376 242 60 35 chr6 85977109 85977460 -63539577 - MTD LTR MaLR -13 406 47 8 1240 505 198 339 6 chr6 85977460 85977628 -63539409 + URR1A DNA MER1_type 2 225 -1 8 1240 389 256 22 0 chr6 85977638 85977728 -63539309 + B4A SINE B4 21 112 -180 8 1240 475 294 71 0 chr6 85977739 85977865 -63539172 + B4A SINE B4 154 288 -4 8 1240 251 275 144 18 chr6 85978207 85978318 -63538719 - MIR SINE MIR -64 144 20 8 1240 270 0 0 0 chr6 85979606 85979636 -63537401 + (CAGGG)n Simple_repeat Simple_repeat 5 34 0 8 1240 243 241 103 0 chr6 85980274 85980332 -63536705 - ID4 SINE ID -4 79 16 8 1240 468 212 17 42 chr6 85980722 85980840 -63536197 - PB1D10 SINE Alu 0 117 3 8 1240 305 169 0 84 chr6 85980948 85981019 -63536018 - L4 LINE RTE -2 2027 1963 8 1240 252 216 306 0 chr6 85982418 85982529 -63534508 - B1F1 SINE Alu 0 149 5 8 1240 288 217 33 16 chr6 85982663 85982724 -63534313 - B1F SINE Alu -87 62 1 8 1240 462 325 12 30 chr6 85982773 85982941 -63534096 - RSINE1 SINE B4 0 165 1 8 1241 637 304 57 105 chr6 85983553 85983903 -63533134 - L1MA4 LINE L1 0 6300 5928 8 1241 943 232 74 37 chr6 85983903 85984118 -63532919 + ID_B1 SINE B4 2 224 0 8 1241 637 291 57 120 chr6 85984118 85984476 -63532561 - L1MA4 LINE L1 -373 5927 5611 8 1241 696 237 55 50 chr6 85984501 85984588 -63532449 - B3A SINE B2 -6 210 121 8 1241 2601 84 22 8 chr6 85984588 85984948 -63532089 - RLTR8 LTR ERVK 0 365 1 8 1241 696 260 10 47 chr6 85984948 85985059 -63531978 - B3A SINE B2 -76 122 10 8 1241 424 322 0 9 chr6 85985469 85985585 -63531452 - PB1D10 SINE Alu -2 115 1 8 1241 236 302 0 0 chr6 85985673 85985736 -63531301 - tRNA-Ala-GCY_ tRNA tRNA -9 66 4 8 1241 30 45 0 0 chr6 85985951 85985995 -63531042 + AT_rich Low_complexity Low_complexity 1 44 0 8 1241 23 0 0 0 chr6 85986128 85986151 -63530886 + AT_rich Low_complexity Low_complexity 1 23 0 8 1241 278 125 15 15 chr6 85986151 85986216 -63530821 - Lx4A LINE L1 0 7058 6994 8 1241 540 328 74 11 chr6 85986523 85986794 -63530243 + B4A SINE B4 3 290 -2 8 1241 227 265 41 0 chr6 85986929 85986978 -63530059 - ID4_ SINE ID -31 52 2 8 1241 751 228 95 48 chr6 85987032 85987221 -63529816 + B3A SINE B2 1 198 0 8 1241 223 289 25 38 chr6 85987522 85987601 -63529436 - ID4 SINE ID -5 78 1 8 1241 1046 258 19 46 chr6 85987617 85987877 -63529160 - B4 SINE B4 -3 289 37 8 1241 258 261 0 0 chr6 85988885 85988950 -63528087 + L1MD LINE L1 3199 3263 -2883 8 1241 692 241 12 6 chr6 85989509 85989680 -63527357 + Lx7 LINE L1 5608 5779 -1917 8 1241 255 31 0 0 chr6 85989870 85989902 -63527135 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1241 21 57 0 0 chr6 85990001 85990036 -63527001 + AT_rich Low_complexity Low_complexity 1 35 0 8 1241 773 211 14 0 chr6 85990040 85990187 -63526850 + B1_Mur1 SINE Alu 1 149 0 8 1241 306 125 0 0 chr6 85990187 85990235 -63526802 + (A)n Simple_repeat Simple_repeat 1 48 0 8 1241 327 271 84 0 chr6 85990489 85990573 -63526464 - PB1D10 SINE Alu -55 94 2 8 1241 1487 155 181 3 chr6 85990803 85991095 -63525942 + MTC LTR MaLR 78 421 0 8 1241 904 270 97 32 chr6 85991095 85991151 -63525886 + Lx7 LINE L1 5361 5412 -435 8 1241 270 0 0 0 chr6 85991151 85991181 -63525856 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 8 1241 904 273 95 30 chr6 85991181 85991603 -63525434 + Lx7 LINE L1 5413 5906 -1790 8 1241 272 217 65 104 chr6 85991836 85991913 -63525124 + RLTR25B LTR ERVK 436 509 -519 8 1241 778 50 0 10 chr6 85991855 85991955 -63525082 + B1_Mus2 SINE Alu 47 145 -2 8 1241 597 173 70 63 chr6 85991959 85992101 -63524936 + B1_Mur1 SINE Alu 1 143 -6 8 1241 235 245 0 0 chr6 85992311 85992360 -63524677 + L1MC5 LINE L1 7731 7779 -182 8 1241 234 0 0 0 chr6 85992950 85992976 -63524061 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 8 1241 520 291 39 45 chr6 85993561 85993716 -63523321 - B4A SINE B4 -137 155 2 8 1241 394 283 17 34 chr6 85993802 85993919 -63523118 + PB1D10 SINE Alu 3 117 0 8 1241 225 0 0 0 chr6 85993948 85993973 -63523064 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 8 1241 1395 67 0 53 chr6 85994032 85994222 -63522815 - B2_Mm2 SINE B2 -14 181 2 8 1241 256 194 52 0 chr6 85994316 85994385 -63522652 - L1MC LINE L1 -558 5615 5538 8 1241 279 79 0 0 chr6 85994401 85994439 -63522598 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1241 542 226 16 31 chr6 85994858 85994986 -63522051 + B3 SINE B2 91 216 0 8 1241 1390 191 144 13 chr6 85996022 85996335 -63520702 - ORR1D1 LTR MaLR -20 354 1 8 1241 526 236 275 0 chr6 85996335 85996491 -63520546 - ID_B1 SINE B4 -20 204 5 8 1241 1475 189 92 29 chr6 85996741 85997089 -63519948 - ORR1D1 LTR MaLR -1 373 4 9 1241 539 295 79 32 chr6 85997804 85998056 -63518981 + L2 LINE L2 1919 2182 -1237 9 1241 238 323 32 21 chr6 85998214 85998309 -63518728 - MER5A1 DNA MER1_type -22 144 49 9 1241 225 0 0 0 chr6 85998327 85998352 -63518685 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1241 270 317 97 71 chr6 85998399 85998749 -63518288 + L2 LINE L2 2398 2756 -663 9 1241 354 312 125 0 chr6 85998984 85999096 -63517941 + RSINE1 SINE B4 24 149 -16 9 1241 1238 254 149 22 chr6 85999523 85999893 -63517144 - MTD LTR MaLR -2 417 1 9 1241 210 71 0 0 chr6 86001240 86001268 -63515769 + (C)n Simple_repeat Simple_repeat 1 28 0 1 1241 284 48 24 0 chr6 86001606 86001648 -63515389 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 2 1241 222 261 59 150 chr6 86002564 86002717 -63514320 + MIR SINE MIR 37 175 -87 3 1241 840 190 29 0 chr6 86003520 86003657 -63513380 - B1_Mur1 SINE Alu -8 141 1 4 1241 860 253 185 18 chr6 86003895 86004244 -63512793 - MTD LTR MaLR 0 379 6 5 1241 194 264 141 55 chr6 86004292 86004420 -63512617 + L2c LINE L2 3036 3174 -213 6 1241 286 255 133 41 chr6 86004595 86004693 -63512344 + PB1D10 SINE Alu 3 109 -8 7 1241 668 286 6 13 chr6 86004707 86004863 -63512174 + RSINE1 SINE B4 7 161 -4 8 1241 396 55 0 0 chr6 86004880 86004935 -63512102 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1241 933 182 31 0 chr6 86005621 86005780 -63511257 + RSINE1 SINE B4 2 165 0 1 1241 243 0 0 0 chr6 86006063 86006090 -63510947 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1241 3174 53 5 20 chr6 86006211 86006613 -63510424 + MTA_Mm LTR MaLR 1 396 0 1 1241 743 215 153 16 chr6 86006937 86007126 -63509911 - B3 SINE B2 0 216 2 1 1241 279 237 63 38 chr6 86007518 86007597 -63509440 - MTE2b LTR MaLR -130 249 169 1 1241 614 208 164 50 chr6 86007732 86007914 -63509123 - B3 SINE B2 -13 182 8 1 1241 800 204 25 0 chr6 86008135 86008297 -63508740 - ID_B1 SINE B4 -3 221 56 1 1241 390 292 44 12 chr6 86008810 86008930 -63508107 - PB1D7 SINE Alu -7 143 11 1 1241 240 35 0 0 chr6 86008952 86008981 -63508056 + (TTTTTG)n Simple_repeat Simple_repeat 4 32 0 1 1241 430 250 26 43 chr6 86008990 86009107 -63507930 - PB1D10 SINE Alu -1 116 2 1 1241 663 213 111 39 chr6 86009871 86010052 -63506985 - B3A SINE B2 -4 194 1 2 1241 2332 154 57 12 chr6 86011218 86011619 -63505418 + MTC LTR MaLR 3 421 0 2 1241 351 0 0 0 chr6 86011679 86011718 -63505319 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1241 482 278 104 46 chr6 86011743 86012003 -63505034 - B4A SINE B4 -16 276 2 2 1241 189 0 0 0 chr6 86013054 86013075 -63503962 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1241 228 205 0 0 chr6 86013238 86013277 -63503760 + polypyrimidine Low_complexity Low_complexity 1 39 0 2 1241 459 287 58 7 chr6 86013277 86013414 -63503623 - B1F2 SINE Alu -5 144 1 2 1241 893 260 0 20 chr6 86013414 86013603 -63503434 - ID_B1 SINE B4 -39 185 1 2 1241 22 0 0 0 chr6 86015078 86015100 -63501937 + AT_rich Low_complexity Low_complexity 1 22 0 2 1241 299 150 0 16 chr6 86017810 86017871 -63499166 + CT-rich Low_complexity Low_complexity 3 62 0 2 1241 989 209 152 8 chr6 86018280 86018536 -63498501 + ORR1D2 LTR MaLR 1 293 -77 3 1241 240 250 0 0 chr6 86018647 86018711 -63498326 + (CATG)n Simple_repeat Simple_repeat 1 64 0 3 1241 2292 236 98 26 chr6 86019539 86020295 -63496742 - Lx8 LINE L1 0 7473 6664 3 1241 638 236 24 60 chr6 86020683 86020850 -63496187 - RSINE1 SINE B4 -2 163 3 3 1241 930 236 218 3 chr6 86021651 86021953 -63495084 - MTE2b LTR MaLR 0 359 1 3 1241 405 289 99 29 chr6 86021953 86022117 -63494920 - MLT1D LTR MaLR -274 231 56 3 1241 228 250 62 0 chr6 86022190 86022254 -63494783 + ORR1D2 LTR MaLR 312 379 0 3 1241 275 302 81 0 chr6 86022407 86022493 -63494544 - MLT1A1 LTR MaLR -296 112 20 3 1241 249 150 25 0 chr6 86022860 86022900 -63494137 + RSINE1 SINE B4 3 43 -122 3 1241 372 43 0 0 chr6 86022979 86023025 -63494012 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1241 324 0 0 0 chr6 86023025 86023060 -63493977 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1241 393 22 0 0 chr6 86023069 86023115 -63493922 + (TGAG)n Simple_repeat Simple_repeat 4 49 0 4 1241 347 139 27 40 chr6 86023760 86023835 -63493202 - HAL1-3A_ME LINE L1 -809 2049 1976 4 1241 397 175 0 19 chr6 86023838 86023943 -63493094 + (TG)n Simple_repeat Simple_repeat 2 104 0 4 1241 770 330 28 43 chr6 86024392 86024674 -63492363 - B4A SINE B4 -13 279 2 4 1241 288 321 64 9 chr6 86024702 86024812 -63492225 + MER104 DNA Tc2 1 116 -65 4 1241 515 184 16 0 chr6 86025940 86026065 -63490972 + GA-rich Low_complexity Low_complexity 2 128 0 4 1241 1683 202 21 12 chr6 86030389 86030730 -63486307 + MTD LTR MaLR 1 334 -73 4 1241 450 0 0 0 chr6 86031584 86031634 -63485403 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1241 894 196 0 3 chr6 86031987 86032276 -63484761 + CT-rich Low_complexity Low_complexity 1 287 0 4 1241 321 340 32 32 chr6 86032277 86032432 -63484605 - HAL1-3A_ME LINE L1 -420 2438 2284 4 1241 241 254 0 17 chr6 86032439 86032499 -63484538 + CT-rich Low_complexity Low_complexity 4 62 0 5 1241 332 321 91 8 chr6 86033455 86033587 -63483450 - MER21B LTR ERV1 -294 569 427 5 1241 384 40 0 0 chr6 86034241 86034291 -63482746 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1241 347 289 51 26 chr6 86034304 86034421 -63482616 - MIR SINE MIR -137 125 6 5 1241 205 313 133 20 chr6 86035000 86035150 -63481887 - MIR3 SINE MIR -28 180 14 5 1241 296 152 136 0 chr6 86035198 86035264 -63481773 - RMER30 DNA MER1_type -31 171 97 5 1241 781 68 0 4 chr6 86036182 86036288 -63480749 - ORR1A3 LTR MaLR 0 374 232 5 1241 291 140 0 0 chr6 86038830 86038880 -63478157 + (TATG)n Simple_repeat Simple_repeat 3 52 0 5 1241 416 301 212 7 chr6 86038894 86039031 -63478006 - RSINE1 SINE B4 0 165 1 5 1241 431 335 126 67 chr6 86039033 86039425 -63477612 - L1M4 LINE L1 -1909 4237 3810 5 1241 279 0 0 0 chr6 86039425 86039456 -63477581 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1241 431 335 126 67 chr6 86039456 86039481 -63477556 - L1M4 LINE L1 -2337 3809 3782 5 1241 781 271 52 98 chr6 86039481 86039767 -63477270 - B4 SINE B4 -18 274 2 6 1241 431 335 126 67 chr6 86039767 86039840 -63477197 - L1M4 LINE L1 -2365 3781 3717 5 1241 227 263 51 34 chr6 86040345 86040404 -63476633 - ID SINE ID -156 68 9 6 1241 210 309 93 31 chr6 86040431 86040528 -63476509 - PB1D9 SINE Alu -16 104 2 6 1241 1515 214 97 11 chr6 86040574 86040924 -63476113 - MTD LTR MaLR -13 406 27 6 1241 323 202 13 0 chr6 86041613 86041692 -63475345 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 1241 465 195 58 0 chr6 86041695 86041782 -63475255 - B3A SINE B2 -105 93 2 6 1241 835 254 15 20 chr6 86042378 86042575 -63474462 - ID_B1 SINE B4 0 224 29 6 1241 921 125 7 7 chr6 86044962 86045107 -63471930 + URR1A DNA MER1_type 81 225 -1 6 1241 190 29 0 81 chr6 86045354 86045391 -63471646 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 6 1241 216 246 0 0 chr6 86045829 86045898 -63471139 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 1241 280 271 13 26 chr6 86045926 86046078 -63470959 + CT-rich Low_complexity Low_complexity 1 150 0 7 1241 189 270 0 0 chr6 86046247 86046284 -63470753 + L2c LINE L2 3118 3154 -233 7 1241 1106 180 48 14 chr6 86046938 86047147 -63469890 + B3 SINE B2 1 216 0 7 1241 1871 237 19 5 chr6 86047847 86048224 -63468813 - MTD LTR MaLR -14 405 24 7 1241 330 295 13 0 chr6 86048814 86048892 -63468145 + B4A SINE B4 213 291 -1 7 1241 291 85 0 0 chr6 86048898 86048945 -63468092 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 7 1241 852 87 15 38 chr6 86048989 86049121 -63467916 - B1_Mm SINE Alu -1 146 18 7 1241 829 253 6 0 chr6 86049146 86049308 -63467729 - B3A SINE B2 -35 163 1 7 1241 24 0 0 0 chr6 86049310 86049334 -63467703 + AT_rich Low_complexity Low_complexity 1 24 0 7 1241 635 263 14 7 chr6 86050949 86051087 -63465950 - RSINE1 SINE B4 -22 143 5 8 1241 314 336 87 5 chr6 86053313 86053479 -63463558 - MIR SINE MIR -48 220 35 8 1241 220 246 167 15 chr6 86055539 86055605 -63461432 + ID4_ SINE ID 5 80 -3 8 1241 332 286 13 13 chr6 86055691 86055769 -63461268 - ID4_ SINE ID -3 80 3 8 1241 454 277 28 28 chr6 86055770 86055915 -63461122 - B1F SINE Alu 0 149 5 8 1241 314 154 89 154 chr6 86056845 86056865 -63460172 - B3 SINE B2 -95 121 7 8 1241 349 216 99 20 chr6 86056865 86056968 -63460069 - B4 SINE B4 -173 119 7 8 1241 225 0 0 0 chr6 86057111 86057136 -63459901 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1241 240 35 0 0 chr6 86057137 86057166 -63459871 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 1241 189 263 67 50 chr6 86059503 86059563 -63457474 - L2a LINE L2 -43 3383 3323 8 1241 192 230 47 47 chr6 86059999 86060063 -63456974 + MIR SINE MIR 185 248 -14 9 1241 214 319 14 0 chr6 86061361 86061430 -63455607 - MER5B DNA MER1_type -9 169 100 9 1241 185 264 113 0 chr6 86061554 86061607 -63455430 + MIRc SINE MIR 121 179 -89 9 1241 447 63 0 0 chr6 86062260 86062323 -63454714 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1241 685 248 164 17 chr6 86063228 86063466 -63453571 + B4A SINE B4 2 274 -18 9 1241 418 319 81 23 chr6 86063654 86063827 -63453210 - MLT1H1 LTR MaLR -83 472 290 9 1241 297 0 0 0 chr6 86064242 86064275 -63452762 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1241 311 133 0 0 chr6 86064291 86064336 -63452701 + tRNA-Ala-GCA tRNA tRNA 2 46 -29 9 1241 495 73 0 0 chr6 86064342 86064410 -63452627 + (CA)n Simple_repeat Simple_repeat 2 69 0 9 1241 414 320 99 0 chr6 86065340 86065512 -63451525 - MLT2B2 LTR ERVL -4 558 370 9 1241 239 114 23 0 chr6 86067564 86067608 -63449429 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1241 256 318 29 32 chr6 86068913 86069034 -63448003 - MIR3 SINE MIR -147 121 3 1 1241 194 62 31 0 chr6 86074169 86074201 -63442836 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1241 931 263 122 12 chr6 86074832 86075086 -63441951 + B4A SINE B4 5 286 -6 1 1241 186 43 0 0 chr6 86075090 86075113 -63441924 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1241 276 279 206 24 chr6 86075135 86075344 -63441693 - MIRb SINE MIR -17 251 5 1 1241 640 235 181 0 chr6 86075688 86075854 -63441183 + B3A SINE B2 2 197 -1 1 1241 1089 80 0 0 chr6 86076348 86076486 -63440551 - B1_Mus2 SINE Alu 0 147 10 1 1241 600 242 60 8 chr6 86076511 86076644 -63440393 + RSINE1 SINE B4 16 155 -10 1 1241 334 296 102 98 chr6 86076699 86076935 -63440102 + L1M5 LINE L1 2482 2718 -3428 1 1241 423 56 0 0 chr6 86076937 86076991 -63440046 + (GGGA)n Simple_repeat Simple_repeat 4 57 0 1 1241 205 195 24 0 chr6 86076999 86077040 -63439997 + GA-rich Low_complexity Low_complexity 1 42 0 1 1241 486 0 0 0 chr6 86077135 86077189 -63439848 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1241 218 291 134 60 chr6 86079588 86079789 -63437248 - B3 SINE B2 0 216 1 1 1241 537 312 106 19 chr6 86079646 86079911 -63437126 - B4A SINE B4 -3 289 2 1 1241 682 204 72 7 chr6 86079968 86080106 -63436931 - RSINE1 SINE B4 -17 148 2 1 1241 217 0 29 29 chr6 86080877 86080911 -63436126 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1241 467 286 41 76 chr6 86081561 86081758 -63435279 - B3A SINE B2 0 198 9 1 1241 823 177 21 0 chr6 86081769 86081910 -63435127 - B1_Mur4 SINE Alu -5 145 2 1 1241 1239 55 0 7 chr6 86081950 86082098 -63434939 + B1_Mm SINE Alu 1 147 0 1 1241 480 341 115 74 chr6 86082300 86082718 -63434319 + MLT1C LTR MaLR 1 435 -32 1 1241 570 15 0 0 chr6 86082722 86082789 -63434248 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1241 287 292 68 54 chr6 86083192 86083376 -63433661 + ORR1E LTR MaLR 1 188 -171 1 1241 445 285 98 27 chr6 86084048 86084304 -63432733 - HAL1 LINE L1 -230 2277 2004 1 1241 681 312 63 34 chr6 86084442 86084887 -63432150 - HAL1 LINE L1 -983 1524 1067 1 1241 781 229 40 0 chr6 86085148 86085349 -63431688 - B3A SINE B2 -3 213 2 1 1241 762 241 6 36 chr6 86085757 86085925 -63431112 + RSINE1 SINE B4 3 165 0 1 1241 672 251 0 98 chr6 86086316 86086510 -63430527 - B3A SINE B2 -10 206 32 1 1241 272 368 160 0 chr6 86086532 86086657 -63430380 - LTR16B2 LTR ERVL -317 145 1 1 1241 323 210 24 12 chr6 86086708 86086790 -63430247 - HAL1 LINE L1 -894 1613 1531 1 1241 811 256 52 0 chr6 86086792 86086964 -63430073 + B3A SINE B2 2 182 -16 1 1241 310 274 37 75 chr6 86087003 86087137 -63429900 - L1MEc LINE L1 -4832 1568 1440 1 1241 611 332 42 56 chr6 86087244 86087531 -63429506 - B4A SINE B4 -2 290 8 1 1241 638 327 71 61 chr6 86088532 86088812 -63428225 - B4A SINE B4 -8 284 2 1 1241 1299 129 0 25 chr6 86088863 86089062 -63427975 + B2_Mm2 SINE B2 2 195 0 1 1241 450 276 88 22 chr6 86089067 86089204 -63427833 + ID_B1 SINE B4 79 224 0 1 1241 264 212 30 0 chr6 86089204 86089270 -63427767 + A-rich Low_complexity Low_complexity 3 70 0 1 1241 314 265 230 11 chr6 86090375 86090566 -63426471 + L2 LINE L2 840 1072 -2347 1 1241 553 256 113 28 chr6 86090652 86090829 -63426208 - ORR1E LTR MaLR -167 192 1 1 1241 617 195 53 0 chr6 86091085 86091198 -63425839 + B3A SINE B2 38 156 -42 1 1241 344 22 0 22 chr6 86091199 86091245 -63425792 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1241 300 27 0 0 chr6 86091363 86091400 -63425637 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1241 252 0 0 0 chr6 86091720 86091748 -63425289 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1 1241 63 0 0 0 chr6 86091835 86091898 -63425139 + AT_rich Low_complexity Low_complexity 1 63 0 1 1241 472 346 118 9 chr6 86091956 86092294 -63424743 - L1MCc LINE L1 -5938 485 111 1 1241 593 27 0 13 chr6 86092327 86092403 -63424634 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1241 834 256 72 5 chr6 86092429 86092637 -63424400 - ID_B1 SINE B4 -2 222 1 1 1241 21 0 0 0 chr6 86093013 86093034 -63424003 + AT_rich Low_complexity Low_complexity 1 21 0 1 1241 21 0 0 0 chr6 86093067 86093088 -63423949 + AT_rich Low_complexity Low_complexity 1 21 0 1 1241 249 300 95 54 chr6 86093153 86093301 -63423736 + L2 LINE L2 1923 2076 -1343 1 1241 597 270 68 0 chr6 86093433 86093581 -63423456 - RSINE1 SINE B4 0 165 8 1 1241 281 261 193 0 chr6 86094101 86094189 -63422848 - ORR1E LTR MaLR -2 357 253 1 1241 419 272 88 75 chr6 86094216 86094375 -63422662 + RSINE1 SINE B4 5 165 0 1 1241 950 197 98 0 chr6 86094466 86094617 -63422420 + B3 SINE B2 2 153 -63 1 1241 468 0 0 0 chr6 86094617 86094669 -63422368 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1241 950 197 98 0 chr6 86094669 86094710 -63422327 + B3 SINE B2 154 212 -4 1 1241 4962 110 68 3 chr6 86095248 86095940 -63421097 - RMER19A LTR ERVK 0 737 1 1 1241 715 123 130 68 chr6 86095941 86096218 -63420819 - MurERV4_19-int LTR ERVK -1 5779 5370 1 1241 4743 118 48 0 chr6 86096216 86096963 -63420074 - MurERV4_19-int LTR ERVK -3350 2430 1648 1 1241 2464 75 28 0 chr6 86097334 86097652 -63419385 + ORR1A2 LTR MaLR 1 327 0 1 1241 180 0 0 0 chr6 86099714 86099734 -63417303 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1241 216 0 0 0 chr6 86099895 86099919 -63417118 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1241 901 239 202 0 chr6 86099919 86100137 -63416900 - B4A SINE B4 -23 269 8 1 1241 465 304 155 28 chr6 86100140 86100353 -63416684 + MLT1A0 LTR MaLR 126 365 0 1 1241 873 274 82 103 chr6 86100465 86100795 -63416242 - MTE2a LTR MaLR -31 348 26 1 1241 450 289 1 57 chr6 86101087 86101231 -63415806 - MTEa LTR MaLR -3 376 243 1 1241 419 311 143 42 chr6 86101395 86101632 -63415405 - MTEa LTR MaLR -120 250 7 1 1241 317 209 15 15 chr6 86101909 86101977 -63415060 + MTEa LTR MaLR 1 68 -311 1 1241 230 250 18 0 chr6 86102502 86102558 -63414479 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1241 278 200 0 0 chr6 86102688 86102738 -63414299 + B1_Mus2 SINE Alu 1 50 -97 1 1241 241 279 25 106 chr6 86102738 86102836 -63414201 + B4 SINE B4 82 208 -16 1 1241 1318 241 109 18 chr6 86102869 86103198 -63413839 - MTEa LTR MaLR -3 376 18 1 1241 256 292 50 21 chr6 86105866 86106006 -63411031 + L1MD LINE L1 5192 5335 -811 1 1241 980 259 35 49 chr6 86106006 86106294 -63410743 + B4A SINE B4 3 286 -6 1 1241 411 364 74 22 chr6 86106357 86106680 -63410357 + L1MC LINE L1 5317 5656 -2129 1 1241 640 246 149 5 chr6 86107945 86108133 -63408904 + B3 SINE B2 2 216 0 1 1241 1270 225 95 4 chr6 86108201 86108464 -63408573 - B4 SINE B4 -5 287 1 1 1241 180 27 0 75 chr6 86108477 86108517 -63408520 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1241 252 86 0 0 chr6 86108888 86108923 -63408114 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 1 1241 1097 128 0 6 chr6 86108925 86109106 -63407931 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 1 1241 23 0 0 0 chr6 86109399 86109422 -63407615 + GC_rich Low_complexity Low_complexity 1 23 0 1 1241 342 0 0 0 chr6 86110551 86110589 -63406448 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1241 202 237 0 48 chr6 86110615 86110677 -63406360 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1241 833 268 68 32 chr6 86111292 86111573 -63405464 + B4 SINE B4 2 292 0 1 1241 252 0 0 0 chr6 86111591 86111619 -63405418 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1241 560 227 35 7 chr6 86111760 86111902 -63405135 + B1_Mur2 SINE Alu 2 147 -2 1 1241 483 336 121 64 chr6 86111902 86112357 -63404680 + L1M5 LINE L1 2666 3146 -3000 1 1241 27 29 0 0 chr6 86112391 86112425 -63404612 + AT_rich Low_complexity Low_complexity 1 34 0 1 1241 811 229 37 19 chr6 86112464 86112678 -63404359 + ID_B1 SINE B4 5 222 -2 1 1241 227 159 64 24 chr6 86112867 86113124 -63403913 + (GTGTG)n Simple_repeat Simple_repeat 1 267 0 1 1241 388 174 44 55 chr6 86113137 86113319 -63403718 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 1 1241 424 274 0 0 chr6 86113564 86113659 -63403378 + ID_B1 SINE B4 110 204 -20 1 1241 657 0 0 0 chr6 86113664 86113737 -63403300 + (GAAA)n Simple_repeat Simple_repeat 3 75 0 1 1241 900 186 0 0 chr6 86113737 86113914 -63403123 + GA-rich Low_complexity Low_complexity 1 177 0 1 1241 243 0 0 0 chr6 86113914 86113941 -63403096 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 1241 462 143 0 0 chr6 86113941 86114018 -63403019 + (GGGA)n Simple_repeat Simple_repeat 3 79 0 1 1241 285 29 0 0 chr6 86114040 86114074 -63402963 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 155 405 311 110 12 chr6 86114263 86114426 -63402611 + B3A SINE B2 2 180 -18 1 1242 1231 218 84 12 chr6 86114557 86114901 -63402136 + ORR1D2 LTR MaLR 2 370 0 1 1242 718 220 23 70 chr6 86115097 86115170 -63401867 + ID SINE ID 6 70 -154 1 1242 408 241 95 69 chr6 86115170 86115286 -63401751 + PB1D9 SINE Alu 1 119 -1 1 1242 456 242 121 0 chr6 86115428 86115527 -63401510 + RSINE1 SINE B4 31 141 -24 1 1242 27 49 0 0 chr6 86115627 86115668 -63401369 + AT_rich Low_complexity Low_complexity 1 41 0 1 1242 272 250 15 0 chr6 86115772 86115840 -63401197 + ID4_ SINE ID 2 70 -13 1 1242 252 279 25 35 chr6 86116934 86117131 -63399906 - RMER17C LTR ERVK -173 237 43 1 1242 420 315 155 17 chr6 86117183 86117422 -63399615 - B4A SINE B4 -19 273 2 1 1242 226 263 0 158 chr6 86117564 86117659 -63399378 + LTR65 LTR ERV1 324 403 -266 1 1242 207 0 0 0 chr6 86117685 86117708 -63399329 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1242 186 43 0 0 chr6 86118373 86118396 -63398641 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2 1242 385 230 60 34 chr6 86118852 86118969 -63398068 + PB1D7 SINE Alu 1 120 0 2 1242 204 215 15 30 chr6 86118969 86119036 -63398001 + A-rich Low_complexity Low_complexity 1 66 0 2 1242 609 40 0 0 chr6 86119742 86119818 -63397219 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1242 389 285 71 24 chr6 86119879 86120005 -63397032 + B3A SINE B2 26 157 -41 2 1242 186 43 0 0 chr6 86120006 86120029 -63397008 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1242 848 163 0 0 chr6 86120052 86120181 -63396856 + L1_Mus3 LINE L1 1728 1856 -4024 2 1242 409 94 0 0 chr6 86120179 86120243 -63396794 - MusHAL1 LINE L1 -805 1907 1844 2 1242 16627 122 42 13 chr6 86120240 86123691 -63393346 + L1_Mus3 LINE L1 3076 6638 0 2 1242 1422 49 43 0 chr6 86123697 86123881 -63393156 + B2_Mm2 SINE B2 2 193 -2 2 1242 5962 159 92 7 chr6 86123919 86124988 -63392049 + Lx5 LINE L1 5891 7050 0 2 1242 297 300 84 52 chr6 86125195 86125318 -63391719 + PB1D7 SINE Alu 4 120 -7 2 1242 726 215 0 32 chr6 86125457 86125611 -63391426 - B1_Mur1 SINE Alu 0 149 1 2 1242 295 335 60 66 chr6 86125905 86126087 -63390950 - B3A SINE B2 -16 182 2 2 1242 364 273 173 0 chr6 86126221 86126331 -63390706 - ID_B1 SINE B4 0 224 96 2 1242 258 293 158 0 chr6 86127168 86127250 -63389787 - MLT1J1 LTR MaLR -130 314 220 2 1242 502 226 232 8 chr6 86127332 86127457 -63389580 + RSINE1 SINE B4 11 163 -2 2 1242 208 311 16 0 chr6 86127461 86127522 -63389515 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1242 243 326 73 34 chr6 86128600 86128778 -63388259 - L1M5 LINE L1 -891 5255 5071 2 1242 429 190 27 5 chr6 86128845 86129075 -63387962 + (TG)n Simple_repeat Simple_repeat 1 235 0 2 1242 1015 274 47 4 chr6 86129076 86129332 -63387705 - B4A SINE B4 0 292 26 2 1242 355 255 68 39 chr6 86129686 86129790 -63387247 - L1M5 LINE L1 -1637 4506 4402 2 1242 592 123 0 5 chr6 86129835 86129933 -63387104 + B1_Mus2 SINE Alu 9 103 -14 2 1242 315 274 41 0 chr6 86129914 86129987 -63387050 + B3A SINE B2 85 160 -38 2 1242 216 0 0 0 chr6 86129990 86130014 -63387023 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1242 417 86 0 0 chr6 86130025 86130083 -63386954 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1242 227 214 0 14 chr6 86130876 86130947 -63386090 + CT-rich Low_complexity Low_complexity 1 70 0 2 1242 424 287 139 16 chr6 86131020 86131278 -63385759 + B4 SINE B4 1 290 -2 2 1242 1928 233 15 98 chr6 86131318 86131847 -63385190 - RLTR18B LTR ERVK -27 485 1 2 1242 318 361 0 0 chr6 86131847 86131966 -63385071 + (CA)n Simple_repeat Simple_repeat 1 119 0 2 1242 373 281 26 85 chr6 86132452 86132633 -63384404 + MIRb SINE MIR 54 230 -38 2 1242 460 287 28 138 chr6 86133069 86133396 -63383641 + B4A SINE B4 2 292 0 2 1242 236 196 0 18 chr6 86133396 86133453 -63383584 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1242 795 244 21 32 chr6 86133470 86133656 -63383381 + B3A SINE B2 14 197 -1 2 1242 605 183 6 67 chr6 86133684 86133848 -63383189 + RMER10B LTR ERVL 194 347 -51 2 1242 374 165 13 0 chr6 86133848 86133927 -63383110 + GA-rich Low_complexity Low_complexity 2 81 0 2 1242 613 295 72 139 chr6 86133957 86134252 -63382785 - MLT2B3 LTR ERVL -65 489 220 2 1242 978 219 52 0 chr6 86134252 86134444 -63382593 - B3 SINE B2 -14 202 1 2 1242 765 233 15 50 chr6 86134444 86134643 -63382394 - B3A SINE B2 -2 196 5 2 1242 613 295 72 139 chr6 86134643 86134655 -63382382 - MLT2B3 LTR ERVL -335 219 211 2 1242 844 238 62 5 chr6 86134655 86134849 -63382188 - ID_B1 SINE B4 -19 205 1 2 1242 613 295 72 139 chr6 86134849 86135007 -63382030 - MLT2B3 LTR ERVL -344 210 56 2 1242 1281 213 95 27 chr6 86135007 86135344 -63381693 - MTE2a LTR MaLR 0 379 20 2 1242 248 220 0 0 chr6 86135358 86135408 -63381629 - MLT2B3 LTR ERVL -456 59 10 2 1242 181 250 23 0 chr6 86135877 86135921 -63381116 - MIR SINE MIR -115 147 103 2 1242 467 241 29 0 chr6 86137088 86137219 -63379818 + B1F SINE Alu 2 135 -14 2 1242 1282 221 58 105 chr6 86137418 86137798 -63379239 - MTE2b LTR MaLR -17 362 1 2 1242 568 247 156 0 chr6 86138273 86138427 -63378610 + B4A SINE B4 109 286 -6 2 1242 334 93 26 26 chr6 86138460 86138537 -63378500 + (CAGA)n Simple_repeat Simple_repeat 4 80 0 2 1242 352 299 34 81 chr6 86138753 86138902 -63378135 - MLT1L LTR MaLR -297 313 172 2 1242 369 0 0 0 chr6 86139952 86139993 -63377044 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1242 502 283 78 99 chr6 86140007 86140289 -63376748 - B4 SINE B4 -14 278 3 2 1242 707 262 53 30 chr6 86142128 86142392 -63374645 + B4A SINE B4 5 274 -18 2 1242 315 283 94 0 chr6 86142575 86142681 -63374356 + PB1D10 SINE Alu 1 116 -1 2 1242 222 304 0 25 chr6 86142687 86142768 -63374269 + GA-rich Low_complexity Low_complexity 3 81 0 2 1242 879 242 5 43 chr6 86142813 86143020 -63374017 - B3 SINE B2 -17 199 1 2 1242 326 289 152 91 chr6 86143482 86143680 -63373357 + B3 SINE B2 1 210 -6 2 1242 496 281 0 0 chr6 86143722 86143836 -63373201 + PB1D9 SINE Alu 1 114 -6 2 1242 479 293 139 66 chr6 86143952 86144255 -63372782 + ORR1E LTR MaLR 24 348 -11 2 1242 26 0 0 0 chr6 86145375 86145401 -63371636 + GC_rich Low_complexity Low_complexity 1 26 0 2 1242 28 29 0 0 chr6 86145963 86145998 -63371039 + AT_rich Low_complexity Low_complexity 1 35 0 2 1242 271 329 67 56 chr6 86146413 86146503 -63370534 + ID_B1 SINE B4 102 192 -32 2 1242 690 13 0 0 chr6 86147447 86147526 -63369511 + (GA)n Simple_repeat Simple_repeat 1 79 0 2 1242 198 279 45 23 chr6 86148022 86148110 -63368927 + MIR SINE MIR 98 187 -75 2 1242 212 260 65 52 chr6 86148402 86148479 -63368558 + MIRb SINE MIR 121 198 -70 2 1242 641 182 65 7 chr6 86149529 86149667 -63367370 - B3 SINE B2 0 216 71 2 1242 321 26 0 0 chr6 86149861 86149899 -63367138 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1242 928 235 6 0 chr6 86149904 86150070 -63366967 - B3A SINE B2 -30 168 2 2 1242 331 209 264 0 chr6 86150228 86150319 -63366718 - PB1D9 SINE Alu -5 115 1 2 1242 844 199 23 12 chr6 86150377 86150565 -63366472 + B3 SINE B2 1 195 0 2 1242 309 329 35 69 chr6 86150667 86150840 -63366197 - B4A SINE B4 -85 207 41 2 1242 388 268 8 67 chr6 86151291 86151411 -63365626 + RSINE1 SINE B4 2 114 -51 2 1242 183 80 0 0 chr6 86151441 86151466 -63365571 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1242 183 42 0 0 chr6 86151793 86151817 -63365220 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 1242 790 232 20 69 chr6 86152399 86152603 -63364434 + B3A SINE B2 2 195 -3 2 1242 204 40 0 0 chr6 86153210 86153235 -63363802 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 2 1242 346 265 59 4 chr6 86153250 86153343 -63363694 + B3A SINE B2 98 197 -1 2 1242 554 248 58 0 chr6 86153370 86153491 -63363546 - RSINE1 SINE B4 -37 128 1 2 1242 505 196 0 89 chr6 86153847 86153970 -63363067 - B3A SINE B2 0 198 87 2 1242 399 56 0 0 chr6 86153975 86154029 -63363008 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1242 1583 166 146 70 chr6 86154234 86154591 -63362446 + ORR1C2 LTR MaLR 1 384 0 2 1242 937 243 65 120 chr6 86154999 86155093 -63361944 - B4 SINE B4 0 292 228 2 1242 882 218 39 19 chr6 86155093 86155299 -63361738 - B3 SINE B2 -5 211 2 2 1242 937 243 65 120 chr6 86155299 86155513 -63361524 - B4 SINE B4 -65 227 1 2 1242 377 215 158 6 chr6 86156891 86156997 -63360040 - B3A SINE B2 -101 115 1 2 1242 308 337 71 6 chr6 86158579 86158761 -63358276 - L1MC LINE L1 -3125 3021 2828 2 1242 499 165 0 34 chr6 86158860 86158948 -63358089 - B3A SINE B2 -113 85 1 2 1242 397 307 59 63 chr6 86158963 86159158 -63357879 - L1MC LINE L1 -3322 2824 2620 2 1242 981 218 19 19 chr6 86159158 86159373 -63357664 - ID_B1 SINE B4 -5 219 5 2 1242 397 307 59 63 chr6 86159373 86159431 -63357606 - L1MC LINE L1 -3527 2619 2572 2 1242 252 0 0 0 chr6 86160250 86160278 -63356759 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1242 270 224 128 78 chr6 86160384 86160502 -63356535 - MIR SINE MIR -26 242 115 2 1242 780 195 0 0 chr6 86160503 86160677 -63356360 + (CA)n Simple_repeat Simple_repeat 1 174 0 2 1242 216 0 0 0 chr6 86161090 86161114 -63355923 + (CTG)n Simple_repeat Simple_repeat 2 25 0 2 1242 564 238 110 9 chr6 86161899 86162038 -63354999 + B3A SINE B2 1 150 -48 2 1242 351 127 0 0 chr6 86162038 86162101 -63354936 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1242 394 262 93 77 chr6 86162101 86162143 -63354894 + B2_Mm2 SINE B2 143 184 -11 2 1242 229 253 53 13 chr6 86162149 86162225 -63354812 + L1M5 LINE L1 5616 5694 -430 2 1242 368 262 0 24 chr6 86162307 86162389 -63354648 + PB1D10 SINE Alu 37 116 -1 2 1242 360 0 0 0 chr6 86163296 86163336 -63353701 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1242 378 0 0 0 chr6 86163336 86163377 -63353660 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1242 445 266 133 25 chr6 86164004 86164162 -63352875 + MER117 DNA MER1_type 11 185 -12 2 1242 283 322 170 0 chr6 86165626 86165797 -63351240 - L1MC1 LINE L1 -4 6329 6130 2 1242 398 214 242 12 chr6 86165807 86165954 -63351083 - B3A SINE B2 -6 192 21 2 1242 478 306 71 69 chr6 86165996 86166308 -63350729 - L1MC1 LINE L1 -187 6146 5831 2 1242 243 0 0 0 chr6 86166308 86166335 -63350702 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1242 478 306 71 69 chr6 86166335 86166485 -63350552 - L1MC1 LINE L1 -503 5830 5683 2 1242 528 45 0 0 chr6 86166917 86166984 -63350053 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 2 1242 186 43 0 0 chr6 86167295 86167318 -63349719 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1242 227 320 80 0 chr6 86167621 86167696 -63349341 - MER20B DNA MER1_type -632 151 71 2 1242 912 105 0 0 chr6 86167815 86167958 -63349079 + (CA)n Simple_repeat Simple_repeat 1 143 0 2 1242 213 39 0 0 chr6 86171196 86171222 -63345815 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2 1242 501 230 69 31 chr6 86171755 86171885 -63345152 + ID_B1 SINE B4 90 224 0 3 1242 241 336 16 89 chr6 86172200 86172324 -63344713 - PB1D10 SINE Alu -2 115 1 3 1242 376 284 18 18 chr6 86172215 86172326 -63344711 - ID_B1 SINE B4 -34 190 80 3 1242 522 0 0 0 chr6 86172408 86172466 -63344571 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1242 325 267 63 56 chr6 86172912 86172962 -63344075 - L1MEg LINE L1 -4134 1950 1898 3 1242 1222 68 0 0 chr6 86172962 86173109 -63343928 - B1_Mus2 SINE Alu 0 147 1 3 1242 325 267 63 56 chr6 86173109 86173136 -63343901 - L1MEg LINE L1 -4187 1897 1871 3 1242 532 234 68 32 chr6 86173136 86173326 -63343711 - B3A SINE B2 -1 197 1 3 1242 325 267 63 56 chr6 86173326 86173390 -63343647 - L1MEg LINE L1 -4214 1870 1807 3 1242 413 253 12 0 chr6 86174461 86174544 -63342493 + B1F SINE Alu 7 90 -59 3 1242 623 246 28 7 chr6 86174732 86174875 -63342162 - ID_B1 SINE B4 0 224 79 3 1242 551 191 185 34 chr6 86175250 86175396 -63341641 + B4 SINE B4 2 169 -123 3 1242 701 168 0 9 chr6 86175427 86175541 -63341496 + B3 SINE B2 1 113 -103 3 1242 208 308 31 71 chr6 86177522 86177620 -63339417 + MIR SINE MIR 82 175 -87 3 1242 1065 111 0 0 chr6 86179819 86180101 -63336936 + (TC)n Simple_repeat Simple_repeat 1 282 0 3 1242 268 170 21 0 chr6 86180264 86180311 -63336726 - B4A SINE B4 -234 58 11 3 1242 721 280 75 34 chr6 86181384 86181650 -63335387 - B4 SINE B4 -14 278 2 3 1242 188 212 94 110 chr6 86182289 86182416 -63334621 + MIRb SINE MIR 19 143 -125 3 1242 225 319 31 52 chr6 86182482 86182578 -63334459 + MER117 DNA MER1_type 76 169 -28 3 1242 381 322 66 102 chr6 86182594 86182792 -63334245 + MER2 DNA MER2_type 2 194 -151 3 1242 423 251 261 13 chr6 86182792 86183026 -63334011 + B4A SINE B4 1 292 0 3 1242 381 322 66 102 chr6 86183026 86183131 -63333906 + MER2 DNA MER2_type 195 294 -51 3 1242 180 270 0 100 chr6 86183813 86183883 -63333154 + L3 LINE CR1 164 226 -4263 3 1242 306 0 0 0 chr6 86184290 86184324 -63332713 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1242 378 0 0 0 chr6 86184441 86184483 -63332554 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1242 455 0 18 0 chr6 86184483 86184537 -63332500 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1242 198 0 0 0 chr6 86184537 86184558 -63332479 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 1242 235 282 28 0 chr6 86184566 86184637 -63332400 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 3 1242 651 271 68 63 chr6 86184722 86184927 -63332110 - B3 SINE B2 0 216 11 3 1242 1028 263 9 0 chr6 86184924 86185152 -63331885 - B4A SINE B4 -62 230 1 3 1242 284 280 142 15 chr6 86185359 86185493 -63331544 - B4 SINE B4 -17 275 125 3 1242 746 301 41 20 chr6 86185497 86185741 -63331296 - Tigger13a DNA MER2_type -380 391 143 3 1242 204 40 0 0 chr6 86186085 86186110 -63330927 + (GTTTG)n Simple_repeat Simple_repeat 4 28 0 3 1242 488 288 7 57 chr6 86186111 86186251 -63330786 - ID_B1 SINE B4 -8 216 84 3 1242 240 35 0 0 chr6 86186535 86186564 -63330473 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 3 1242 1313 249 71 26 chr6 86187017 86187356 -63329681 + MTD LTR MaLR 8 361 -58 3 1242 211 159 0 120 chr6 86187501 86187551 -63329486 - PB1D10 SINE Alu -7 110 67 3 1242 758 178 144 39 chr6 86187777 86187958 -63329079 + B3 SINE B2 6 205 -11 3 1242 423 235 96 19 chr6 86187989 86188093 -63328944 + PB1D10 SINE Alu 1 112 -5 3 1242 655 238 0 0 chr6 86188104 86188226 -63328811 - ID_B1 SINE B4 -5 219 98 3 1242 1163 136 78 55 chr6 86188866 86189084 -63327953 - URR1B DNA MER1_type 0 225 3 3 1242 190 310 44 102 chr6 86189280 86189506 -63327531 - L3 LINE CR1 -2031 2458 2246 3 1242 306 0 0 0 chr6 86189624 86189658 -63327379 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 3 1242 507 17 0 0 chr6 86189706 86189766 -63327271 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1242 270 0 0 0 chr6 86189766 86189795 -63327242 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1242 443 250 12 0 chr6 86189795 86189879 -63327158 - B1F SINE Alu -19 130 46 3 1242 346 330 51 28 chr6 86190083 86190261 -63326776 - MIR SINE MIR -71 191 10 3 1242 378 0 0 0 chr6 86190277 86190319 -63326718 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1242 216 111 0 0 chr6 86190431 86190467 -63326570 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1242 725 232 46 0 chr6 86190499 86190650 -63326387 + RSINE1 SINE B4 3 160 -5 3 1242 30 27 0 0 chr6 86190658 86190695 -63326342 + AT_rich Low_complexity Low_complexity 1 37 0 3 1242 240 338 0 36 chr6 86191465 86191548 -63325489 - ID SINE ID -144 80 1 3 1242 574 182 223 0 chr6 86191608 86191729 -63325308 + B1_Mur1 SINE Alu 1 148 -1 3 1242 290 320 68 43 chr6 86191881 86192044 -63324993 + MER33 DNA MER1_type 4 170 -154 3 1242 721 185 124 85 chr6 86192692 86192758 -63324279 - MTD LTR MaLR 0 419 364 3 1242 1342 190 169 12 chr6 86192758 86193089 -63323948 - ORR1C2 LTR MaLR 0 384 2 3 1242 721 217 94 72 chr6 86193089 86193316 -63323721 - MTD LTR MaLR -56 363 11 3 1242 367 196 24 130 chr6 86193763 86193886 -63323151 + B4A SINE B4 3 112 -180 3 1242 461 253 112 63 chr6 86193873 86194107 -63322930 - B4 SINE B4 -18 274 69 3 1242 753 191 112 34 chr6 86194811 86194990 -63322047 - B3A SINE B2 -4 194 2 3 1242 971 224 32 32 chr6 86195383 86195600 -63321437 + ID_B1 SINE B4 1 217 -7 3 1242 21 36 0 0 chr6 86195601 86195629 -63321408 + AT_rich Low_complexity Low_complexity 1 28 0 3 1242 306 350 75 51 chr6 86195721 86195974 -63321063 + L1M5 LINE L1 5040 5298 -848 3 1242 780 219 6 36 chr6 86196298 86196464 -63320573 + RSINE1 SINE B4 2 162 -3 3 1242 369 0 0 0 chr6 86196624 86196665 -63320372 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1242 186 43 0 0 chr6 86196960 86196983 -63320054 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 3 1242 253 0 0 0 chr6 86196996 86197035 -63320002 + L1Md_T LINE L1 6544 6582 0 3 1242 822 197 60 33 chr6 86197053 86197237 -63319800 + B3 SINE B2 27 215 -1 3 1242 328 244 116 0 chr6 86197315 86197401 -63319636 + MLT1D LTR MaLR 1 96 -409 3 1242 1364 99 6 6 chr6 86198160 86198343 -63318694 + B2_Mm1t SINE B2 2 184 -9 3 1242 314 98 20 0 chr6 86198343 86198394 -63318643 + (GGA)n Simple_repeat Simple_repeat 1 52 0 3 1242 709 196 43 96 chr6 86198425 86198634 -63318403 + B3A SINE B2 1 198 0 3 1242 42 20 0 0 chr6 86198842 86198891 -63318146 + AT_rich Low_complexity Low_complexity 1 49 0 3 1242 345 292 101 25 chr6 86199333 86199491 -63317546 + MIRb SINE MIR 21 190 -78 3 1242 1233 243 63 20 chr6 86199999 86200347 -63316690 - Lx9 LINE L1 -174 7470 7108 3 1242 719 237 91 40 chr6 86200367 86200565 -63316472 + B4 SINE B4 85 292 0 3 1242 348 281 106 59 chr6 86201701 86201871 -63315166 + MER5B DNA MER1_type 1 178 0 3 1242 361 283 8 40 chr6 86202951 86203076 -63313961 + ID_B1 SINE B4 82 202 -22 3 1242 450 231 9 27 chr6 86202968 86203079 -63313958 + B1F SINE Alu 19 127 -22 3 1242 366 232 0 35 chr6 86203045 86203130 -63313907 + B1F SINE Alu 66 147 -2 3 1242 186 43 0 0 chr6 86203146 86203169 -63313868 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 3 1242 1425 189 209 15 chr6 86203484 86203823 -63313214 + MTD LTR MaLR 1 405 -14 3 1242 535 199 244 6 chr6 86203830 86204002 -63313035 - ID_B1 SINE B4 -10 214 2 3 1242 190 333 60 77 chr6 86204047 86204164 -63312873 - MIR3 SINE MIR -51 157 43 3 1242 183 80 0 0 chr6 86204539 86204564 -63312473 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 3 1242 756 222 27 66 chr6 86205133 86205316 -63311721 + B3A SINE B2 1 176 -22 3 1242 30 0 0 0 chr6 86205316 86205346 -63311691 + AT_rich Low_complexity Low_complexity 1 30 0 3 1242 585 216 48 8 chr6 86205560 86205686 -63311351 + B1_Mur1 SINE Alu 14 144 -5 3 1242 720 300 38 30 chr6 86205820 86206057 -63310980 + ORR1E LTR MaLR 1 239 -120 3 1242 250 419 25 35 chr6 86206076 86206274 -63310763 + MER2 DNA MER2_type 119 314 -31 3 1242 290 231 67 100 chr6 86206702 86206822 -63310215 - PB1D10 SINE Alu 0 117 2 3 1242 613 224 147 0 chr6 86206860 86207003 -63310034 - RSINE1 SINE B4 0 165 2 3 1242 288 0 0 0 chr6 86207014 86207046 -63309991 + (TTG)n Simple_repeat Simple_repeat 1 32 0 3 1242 216 0 0 0 chr6 86207046 86207070 -63309967 + (ATG)n Simple_repeat Simple_repeat 1 24 0 3 1242 1019 126 7 0 chr6 86207070 86207213 -63309824 - B1_Mur4 SINE Alu -6 144 1 3 1242 308 276 7 18 chr6 86207359 86207463 -63309574 + ID4 SINE ID 2 102 -50 3 1242 200 282 68 27 chr6 86208469 86208542 -63308495 + MIR SINE MIR 57 132 -76 3 1242 4043 34 19 0 chr6 86209637 86210105 -63306932 - L1Md_T LINE L1 0 6582 6106 3 1242 283 44 44 0 chr6 86210321 86210366 -63306671 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 3 1242 313 318 68 0 chr6 86211414 86211502 -63305535 + B1F1 SINE Alu 4 97 -52 3 1242 743 217 113 11 chr6 86212168 86212354 -63304683 + ID_B1 SINE B4 2 206 -18 3 1242 472 259 60 0 chr6 86212696 86212812 -63304225 - B4A SINE B4 -169 123 1 3 1242 516 286 8 0 chr6 86212809 86212833 -63304204 - ID_B1 SINE B4 -4 220 94 3 1242 518 235 29 0 chr6 86212833 86212935 -63304102 - B1F2 SINE Alu -32 117 13 3 1242 463 267 102 58 chr6 86213712 86213986 -63303051 + B4 SINE B4 1 286 -6 4 1242 305 286 0 0 chr6 86213989 86214066 -63302971 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1242 260 237 167 26 chr6 86216522 86216600 -63300437 - BC1_Mm scRNA scRNA -62 90 2 4 1242 307 203 29 0 chr6 86216733 86216802 -63300235 - B4 SINE B4 -220 72 2 4 1242 213 345 62 0 chr6 86216926 86217039 -63299998 - MIRc SINE MIR -122 146 27 4 1242 379 200 14 0 chr6 86217256 86217326 -63299711 - ID4 SINE ID -11 72 2 4 1242 218 200 0 0 chr6 86217351 86217401 -63299636 + T-rich Low_complexity Low_complexity 1 50 0 4 1242 537 212 35 0 chr6 86218719 86218832 -63298205 + PB1D10 SINE Alu 1 117 0 4 1242 396 186 16 81 chr6 86219218 86219341 -63297696 - Lx4B LINE L1 -4 7054 6940 4 1242 692 285 6 0 chr6 86219366 86219524 -63297513 + B4A SINE B4 132 290 -2 4 1242 498 33 0 0 chr6 86219546 86219606 -63297431 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1242 402 74 0 0 chr6 86221691 86221745 -63295292 + (CACG)n Simple_repeat Simple_repeat 2 55 0 4 1242 22 0 0 0 chr6 86221786 86221808 -63295229 + GC_rich Low_complexity Low_complexity 1 22 0 4 1242 592 196 28 0 chr6 86223489 86223596 -63293441 - PB1D10 SINE Alu -6 111 2 4 1242 617 239 0 72 chr6 86224512 86224679 -63292358 + RSINE1 SINE B4 11 165 0 4 1242 441 245 78 0 chr6 86225176 86225278 -63291759 - PB1D10 SINE Alu -7 110 1 4 1242 617 296 0 48 chr6 86225820 86226026 -63291011 - B3A SINE B2 -1 197 2 4 1242 648 222 146 105 chr6 86226484 86226650 -63290387 - MTE2a LTR MaLR 0 379 189 4 1242 588 221 7 64 chr6 86226650 86226790 -63290247 + B1_Mur2 SINE Alu 1 132 -17 4 1242 648 222 146 105 chr6 86226790 86226985 -63290052 - MTE2a LTR MaLR -191 188 4 4 1242 257 283 39 39 chr6 86228124 86228227 -63288810 + B2_Mm2 SINE B2 1 103 -92 4 1242 232 254 55 27 chr6 86228205 86228278 -63288759 - RLTR22_Mur LTR ERVK -467 1381 1307 4 1242 341 228 6 37 chr6 86228280 86228444 -63288593 + (CATA)n Simple_repeat Simple_repeat 1 159 0 4 1242 301 218 0 0 chr6 86228450 86228505 -63288532 + HAL1-3A_ME LINE L1 1976 2030 -828 4 1242 524 140 11 0 chr6 86228964 86229057 -63287980 + CT-rich Low_complexity Low_complexity 2 95 0 4 1242 554 292 23 8 chr6 86229059 86229190 -63287847 - B1_Mur1 SINE Alu -14 135 3 4 1242 571 263 69 11 chr6 86229194 86229382 -63287655 - Lx6 LINE L1 0 7460 7262 4 1242 1250 134 146 4 chr6 86229430 86229663 -63287374 - RMER16 LTR ERVK 0 533 268 4 1242 419 283 141 8 chr6 86229766 86229887 -63287150 + RSINE1 SINE B4 29 165 0 4 1242 949 197 98 5 chr6 86230325 86230519 -63286518 + B3 SINE B2 4 215 -1 4 1242 316 306 61 53 chr6 86230554 86230685 -63286352 + L1M4 LINE L1 4068 4199 -1947 4 1242 552 264 50 0 chr6 86230949 86231070 -63285967 + RSINE1 SINE B4 8 134 -31 4 1242 663 299 24 17 chr6 86231453 86231701 -63285336 + L1M4 LINE L1 5234 5481 -819 4 1242 426 69 0 0 chr6 86231703 86231761 -63285276 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1242 1095 202 38 5 chr6 86231914 86232123 -63284914 + MTEa LTR MaLR 9 224 -155 4 1242 288 143 0 0 chr6 86232160 86232216 -63284821 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1242 482 203 0 6 chr6 86232231 86232390 -63284647 + (CA)n Simple_repeat Simple_repeat 1 158 0 4 1242 303 240 0 0 chr6 86232405 86232509 -63284528 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 1242 423 0 0 0 chr6 86232510 86232557 -63284480 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 4 1242 212 244 174 0 chr6 86232817 86232903 -63284134 + MIRb SINE MIR 55 155 -113 4 1242 763 218 66 20 chr6 86234197 86234394 -63282643 - B3 SINE B2 -10 206 1 4 1242 673 241 28 7 chr6 86234397 86234539 -63282498 - ID_B1 SINE B4 -1 223 79 4 1242 300 328 20 97 chr6 86236039 86236235 -63280802 - MLT1L LTR MaLR -34 576 396 4 1242 294 29 0 0 chr6 86236649 86236684 -63280353 + (TGGA)n Simple_repeat Simple_repeat 2 36 0 4 1242 297 164 77 64 chr6 86237427 86237439 -63279598 - B4 SINE B4 -8 284 273 4 1242 192 40 0 0 chr6 86237439 86237464 -63279573 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 4 1242 297 164 77 64 chr6 86237464 86237529 -63279508 - B4 SINE B4 -20 272 206 4 1242 1147 244 103 78 chr6 86237612 86238021 -63279016 + MTD LTR MaLR 1 419 0 4 1242 2748 267 69 15 chr6 86238027 86238278 -63278759 + Lx8 LINE L1 6536 6803 -670 4 1242 288 0 0 0 chr6 86238278 86238310 -63278727 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1242 2748 267 69 15 chr6 86238310 86238946 -63278091 + Lx8 LINE L1 6804 7470 -3 4 1242 948 243 59 0 chr6 86239033 86239235 -63277802 - B3 SINE B2 0 216 3 4 1242 352 298 24 0 chr6 86239251 86239335 -63277702 + B4 SINE B4 83 168 -124 4 1242 603 228 0 16 chr6 86239349 86239532 -63277505 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1242 645 213 11 6 chr6 86239500 86239675 -63277362 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 4 1242 291 257 28 28 chr6 86239699 86239807 -63277230 + CT-rich Low_complexity Low_complexity 2 109 0 4 1242 562 278 18 12 chr6 86239807 86239971 -63277066 + MLT1A1 LTR MaLR 215 379 -29 4 1242 189 0 0 0 chr6 86240213 86240234 -63276803 + (TTG)n Simple_repeat Simple_repeat 2 22 0 4 1242 1186 192 9 0 chr6 86240577 86240791 -63276246 + B3 SINE B2 1 216 0 4 1242 1232 47 0 0 chr6 86240826 86240974 -63276063 + B2_Mm2 SINE B2 14 161 -34 4 1242 441 0 0 0 chr6 86240974 86241023 -63276014 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 4 1242 203 171 0 0 chr6 86241180 86241215 -63275822 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 4 1242 594 237 57 7 chr6 86241216 86241356 -63275681 - B1F SINE Alu -2 147 1 4 1242 584 262 18 59 chr6 86241447 86241617 -63275420 + RSINE1 SINE B4 3 165 0 4 1242 709 191 6 11 chr6 86241624 86241804 -63275233 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1242 782 190 0 11 chr6 86241826 86242007 -63275030 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1242 230 305 67 87 chr6 86242092 86242196 -63274841 + MER5A DNA MER1_type 3 104 -85 4 1242 26 0 0 0 chr6 86242347 86242373 -63274664 + AT_rich Low_complexity Low_complexity 1 26 0 4 1242 392 338 33 33 chr6 86242447 86242467 -63274570 + ID_B1 SINE B4 74 219 -1 4 1242 529 278 8 0 chr6 86242467 86242593 -63274444 + B1F SINE Alu 18 144 -5 4 1242 342 195 0 0 chr6 86242628 86242705 -63274332 + G-rich Low_complexity Low_complexity 5 81 0 4 1242 439 177 12 12 chr6 86243127 86243212 -63273825 + B1F2 SINE Alu 33 126 -23 4 1242 309 109 0 0 chr6 86243242 86243288 -63273749 + (CCTG)n Simple_repeat Simple_repeat 1 46 0 4 1242 470 332 142 17 chr6 86243303 86243536 -63273501 - B4 SINE B4 -30 262 1 4 1242 1207 44 0 0 chr6 86244521 86244658 -63272379 + B1_Mm SINE Alu 1 137 -10 4 1242 261 0 0 0 chr6 86244658 86244687 -63272350 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1242 351 44 0 0 chr6 86245145 86245190 -63271847 + (TCTG)n Simple_repeat Simple_repeat 3 47 0 4 1242 396 221 78 152 chr6 86245194 86245286 -63271751 - Tigger7 DNA MER2_type -75 2416 2324 4 155 502 254 108 65 chr6 86245286 86245471 -63271566 + B3A SINE B2 5 197 -1 4 1243 396 221 78 152 chr6 86245471 86245634 -63271403 - Tigger7 DNA MER2_type -168 2323 2180 4 1243 706 244 125 66 chr6 86246088 86246459 -63270578 - MTD LTR MaLR -16 403 18 4 1243 662 182 9 0 chr6 86246829 86246939 -63270098 + PB1D9 SINE Alu 2 112 -8 4 1243 414 0 0 0 chr6 86246941 86246987 -63270050 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 4 1243 366 42 0 0 chr6 86247029 86247077 -63269960 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1243 358 273 0 11 chr6 86247078 86247167 -63269870 - B1F SINE Alu -61 88 1 4 1243 699 276 88 39 chr6 86247317 86247577 -63269460 + B4 SINE B4 2 274 -18 4 1243 608 194 327 6 chr6 86247593 86247749 -63269288 - B3 SINE B2 -10 206 1 4 1243 781 144 8 0 chr6 86247944 86248069 -63268968 - B1_Mus2 SINE Alu 0 147 22 4 1243 216 0 0 0 chr6 86248158 86248182 -63268855 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1243 227 156 22 22 chr6 86248240 86248286 -63268751 + ZP3AR Satellite Satellite 37 82 -130 4 1243 343 200 30 15 chr6 86248248 86248314 -63268723 + ID4_ SINE ID 4 70 -13 4 1243 546 79 0 0 chr6 86248314 86248390 -63268647 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1243 216 0 0 0 chr6 86248392 86248416 -63268621 + (CAGG)n Simple_repeat Simple_repeat 1 24 0 4 1243 338 283 9 66 chr6 86248787 86248893 -63268144 + B1_Mur4 SINE Alu 10 109 -41 4 1243 22 0 0 0 chr6 86249031 86249053 -63267984 + AT_rich Low_complexity Low_complexity 1 22 0 4 1243 808 229 11 38 chr6 86249093 86249279 -63267758 - B3A SINE B2 -16 182 2 4 1243 286 261 90 113 chr6 86249283 86249495 -63267542 - Charlie7 DNA MER1_type -1577 1035 829 4 1243 649 276 19 26 chr6 86249530 86249686 -63267351 - RSINE1 SINE B4 -9 156 2 4 1243 210 269 39 0 chr6 86249715 86249767 -63267270 + PB1D10 SINE Alu 2 55 -62 4 1243 366 23 0 0 chr6 86249818 86249861 -63267176 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 4 1243 377 152 15 15 chr6 86249866 86249933 -63267104 + MTE2b LTR MaLR 313 379 0 4 1243 429 20 0 0 chr6 86250399 86250449 -63266588 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1243 490 252 9 0 chr6 86250466 86250581 -63266456 + PB1D10 SINE Alu 1 116 -1 4 1243 406 255 20 20 chr6 86251282 86251382 -63265655 + B4 SINE B4 1 100 -192 4 1243 534 299 41 7 chr6 86251396 86251541 -63265496 + B3A SINE B2 41 190 -8 4 1243 922 191 66 57 chr6 86251546 86251638 -63265399 - B3 SINE B2 0 216 119 4 1243 2350 145 71 5 chr6 86251638 86252033 -63265004 + MTC LTR MaLR 1 421 0 4 1243 922 191 66 57 chr6 86252033 86252151 -63264886 - B3 SINE B2 -98 118 4 4 1243 216 0 0 0 chr6 86252163 86252187 -63264850 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1243 1231 34 0 39 chr6 86252187 86252340 -63264697 - B1_Mus2 SINE Alu 0 147 1 5 1243 346 171 827 0 chr6 86252369 86252467 -63264570 - B3 SINE B2 -2 214 36 5 1243 577 174 10 0 chr6 86252517 86252615 -63264422 + PB1D9 SINE Alu 5 103 -17 5 1243 730 218 70 0 chr6 86252654 86252810 -63264227 + B4A SINE B4 114 280 -12 4 1243 497 232 10 32 chr6 86252894 86253056 -63263981 + MTEb LTR MaLR 167 364 -15 5 1243 387 0 0 0 chr6 86253056 86253099 -63263938 + (CTAA)n Simple_repeat Simple_repeat 3 45 0 5 1243 261 350 121 25 chr6 86253380 86253579 -63263458 + LTR16B1 LTR ERVL 179 396 -84 5 1243 552 272 33 52 chr6 86253772 86253985 -63263052 - B3 SINE B2 -4 212 4 5 1243 501 220 48 41 chr6 86253985 86254097 -63262940 - RCHARR1 DNA MER1_type -474 500 388 5 1243 467 236 113 13 chr6 86254097 86254247 -63262790 + RSINE1 SINE B4 1 165 0 5 1243 501 220 48 41 chr6 86254247 86254277 -63262760 - RCHARR1 DNA MER1_type -587 387 357 5 1243 478 244 48 16 chr6 86254487 86254612 -63262425 + RMER15 LTR ERVL 433 561 -14 5 1243 233 279 80 23 chr6 86254596 86254684 -63262353 - ORR1D2 LTR MaLR -258 112 20 5 1243 249 315 81 34 chr6 86254799 86254947 -63262090 + MER5B DNA MER1_type 7 161 -17 5 1243 239 279 0 47 chr6 86255438 86255497 -63261540 + B4 SINE B4 43 98 -194 5 1243 253 248 342 96 chr6 86255497 86255671 -63261366 + B3 SINE B2 1 216 0 5 1243 517 274 100 19 chr6 86255765 86255925 -63261112 + B4A SINE B4 1 173 -119 5 1243 633 196 90 21 chr6 86255942 86256088 -63260949 + MT2A LTR ERVL 1 142 -391 5 1243 920 179 140 14 chr6 86256096 86256308 -63260729 + MT2A LTR ERVL 94 456 -145 5 1243 328 284 35 52 chr6 86256279 86256394 -63260643 + B4A SINE B4 157 269 -23 5 1243 422 50 150 0 chr6 86256562 86256622 -63260415 + B1_Mus2 SINE Alu 73 141 -6 5 1243 873 54 0 0 chr6 86256624 86256735 -63260302 + (GAAA)n Simple_repeat Simple_repeat 4 114 0 5 1243 1177 82 0 0 chr6 86256735 86256882 -63260155 + B1_Mus1 SINE Alu 2 148 0 5 1243 32 43 0 0 chr6 86256920 86256966 -63260071 + AT_rich Low_complexity Low_complexity 1 46 0 5 1243 252 0 0 0 chr6 86256972 86257000 -63260037 + (TTG)n Simple_repeat Simple_repeat 1 28 0 5 1243 507 347 68 47 chr6 86257029 86257368 -63259669 - MT2A LTR ERVL -119 414 69 5 1243 280 341 91 43 chr6 86257438 86257668 -63259369 + MLT1D LTR MaLR 44 284 -221 5 1243 293 212 48 48 chr6 86257706 86257790 -63259247 - L1MC3 LINE L1 -748 7037 6954 5 1243 1749 184 204 43 chr6 86257819 86258325 -63258712 + RMER19B LTR ERVK 313 899 -3 5 1243 1141 59 0 0 chr6 86258325 86258460 -63258577 + B1_Mm SINE Alu 1 135 -12 5 1243 210 37 0 0 chr6 86258461 86258488 -63258549 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1243 240 292 96 14 chr6 86258772 86258845 -63258192 - MER2 DNA MER2_type -24 321 243 5 1243 808 257 46 114 chr6 86258917 86259224 -63257813 - B4 SINE B4 -2 290 5 5 1243 261 291 12 25 chr6 86259225 86259306 -63257731 - MER2 DNA MER2_type -120 225 146 5 1243 478 308 137 23 chr6 86259342 86259561 -63257476 - B4A SINE B4 -6 286 43 5 1243 343 186 69 137 chr6 86259820 86259898 -63257139 + RSINE1 SINE B4 43 118 -47 5 1243 318 50 0 0 chr6 86259898 86259938 -63257099 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1243 343 186 69 137 chr6 86259938 86259990 -63257047 + RSINE1 SINE B4 119 164 -1 5 1243 1374 267 122 17 chr6 86259991 86260474 -63256563 + RMER5 LTR ERV1 1 534 0 5 1243 324 48 48 16 chr6 86260486 86260549 -63256488 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 5 1243 541 271 122 25 chr6 86260561 86260758 -63256279 + B3 SINE B2 1 216 0 5 1243 202 373 18 9 chr6 86261221 86261332 -63255705 + MIR SINE MIR 24 135 -73 5 1243 222 302 0 19 chr6 86261452 86261506 -63255531 + MIRm SINE MIR 29 81 -195 5 1243 27 0 0 0 chr6 86261558 86261585 -63255452 + AT_rich Low_complexity Low_complexity 1 27 0 5 1243 823 251 247 3 chr6 86261649 86262008 -63255029 - RMER20A LTR ERVK -69 447 1 5 1243 1314 198 56 0 chr6 86262008 86262276 -63254761 - MurERV4-int LTR ERVK -2089 3171 2889 5 1243 479 271 99 78 chr6 86262447 86262729 -63254308 - ORR1E LTR MaLR -105 269 1 5 1243 1114 276 79 26 chr6 86262867 86263239 -63253798 - MTD LTR MaLR -31 388 30 5 1243 875 204 5 105 chr6 86263265 86263484 -63253553 + B3A SINE B2 1 197 -1 5 1243 272 289 78 0 chr6 86264205 86264295 -63252742 + L2a LINE L2 3314 3410 -16 5 1243 2150 95 3 141 chr6 86264545 86264927 -63252110 - ORR1A4 LTR MaLR 0 329 1 5 1243 536 325 42 12 chr6 86265185 86265353 -63251684 + B4A SINE B4 120 292 0 5 1243 513 0 0 0 chr6 86265440 86265497 -63251540 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1243 2256 153 26 16 chr6 86265916 86266301 -63250736 + ORR1B1 LTR MaLR 6 394 0 5 1243 236 308 63 42 chr6 86266314 86266409 -63250628 + ORR1E LTR MaLR 26 122 -237 5 1243 243 294 14 29 chr6 86266545 86266615 -63250422 + MLT1A1 LTR MaLR 305 373 -35 5 1243 259 200 31 124 chr6 86266919 86267016 -63250021 - MLT1A1 LTR MaLR -287 121 34 5 1243 471 248 64 0 chr6 86267646 86267755 -63249282 - MTEa LTR MaLR -13 366 251 5 1243 1288 124 11 0 chr6 86267790 86267976 -63249061 + B2_Mm1t SINE B2 1 188 -5 5 1243 1073 29 0 67 chr6 86268062 86268212 -63248825 - B1_Mus1 SINE Alu 0 148 9 5 1243 202 286 29 0 chr6 86268229 86268299 -63248738 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1243 430 277 217 44 chr6 86268307 86268556 -63248481 - B4A SINE B4 0 292 1 5 1243 822 199 24 36 chr6 86268556 86268723 -63248314 - MTEa LTR MaLR -208 171 7 5 1243 289 248 137 10 chr6 86269451 86269553 -63247484 + PB1D7 SINE Alu 4 118 -2 5 1243 345 233 0 0 chr6 86269646 86269705 -63247332 - B4 SINE B4 -4 288 230 5 1243 1371 196 168 207 chr6 86269705 86269849 -63247188 + MT2A LTR ERVL 1 81 -452 5 1243 812 108 291 0 chr6 86269849 86269997 -63247040 - B2_Mm1a SINE B2 0 193 3 5 1243 1371 196 168 207 chr6 86269997 86270362 -63246675 + MT2A LTR ERVL 82 489 -44 5 1243 792 83 0 0 chr6 86270362 86270471 -63246566 + (TG)n Simple_repeat Simple_repeat 2 110 0 5 1243 1371 196 168 207 chr6 86270471 86270515 -63246522 + MT2A LTR ERVL 490 533 0 5 1243 955 208 69 73 chr6 86270521 86270754 -63246283 - B4 SINE B4 -60 232 1 5 1243 679 215 0 15 chr6 86271549 86271681 -63245356 + ID_B1 SINE B4 82 211 -13 5 1243 1077 140 0 0 chr6 86271689 86271867 -63245170 + (GAA)n Simple_repeat Simple_repeat 1 178 0 5 1243 717 274 30 10 chr6 86271908 86271922 -63245115 + ID SINE ID 1 14 -210 5 1243 410 0 0 20 chr6 86271922 86271973 -63245064 + (AGGGGG)n Simple_repeat Simple_repeat 2 51 0 5 1243 717 274 30 10 chr6 86271973 86272157 -63244880 + ID_B1 SINE B4 15 203 -21 5 1243 207 88 0 0 chr6 86272609 86272643 -63244394 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 5 1243 592 264 70 21 chr6 86272652 86272838 -63244199 + B3A SINE B2 2 196 -2 5 1243 273 57 0 0 chr6 86272849 86272884 -63244153 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1243 1034 39 0 0 chr6 86272918 86273045 -63243992 - B1_Mm SINE Alu -11 136 10 5 1243 636 258 6 137 chr6 86273656 86273831 -63243206 + B4 SINE B4 2 153 -139 5 1243 310 303 0 13 chr6 86273767 86273844 -63243193 + B1F2 SINE Alu 5 80 -69 5 1243 204 67 0 0 chr6 86273861 86273891 -63243146 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1243 457 285 28 28 chr6 86273896 86274037 -63243000 + RSINE1 SINE B4 8 148 -17 5 1243 561 15 0 0 chr6 86274064 86274130 -63242907 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1243 186 103 0 0 chr6 86274828 86274857 -63242180 + (CCCCAG)n Simple_repeat Simple_repeat 2 30 0 5 1243 521 139 30 0 chr6 86275463 86275564 -63241473 + L1_Mus3 LINE L1 6533 6636 -2 5 1243 1078 132 6 6 chr6 86276058 86276226 -63240811 + URR1A DNA MER1_type 59 226 0 5 1243 1502 238 118 10 chr6 86276234 86276617 -63240420 - MTEa-int LTR MaLR -1152 428 5 5 1243 1129 269 120 18 chr6 86276629 86276962 -63240075 - MTEa LTR MaLR -12 367 1 5 1243 319 270 11 0 chr6 86276969 86277058 -63239979 + L1MB8 LINE L1 5535 5624 -554 5 1243 1028 167 194 0 chr6 86277200 86277380 -63239657 + B3 SINE B2 2 216 0 5 1243 507 262 8 0 chr6 86277680 86277802 -63239235 + B3A SINE B2 61 183 -15 5 1243 1058 196 5 37 chr6 86277831 86278048 -63238989 + B3 SINE B2 2 211 -5 5 1243 262 333 9 0 chr6 86278094 86278199 -63238838 + L1MB8 LINE L1 6055 6160 -18 5 1243 360 306 81 140 chr6 86278991 86279099 -63237938 + B4 SINE B4 9 96 -196 5 1243 676 210 27 47 chr6 86279099 86279249 -63237788 + B1_Mur1 SINE Alu 1 147 -2 5 1243 360 274 58 92 chr6 86279249 86279442 -63237595 + B4 SINE B4 82 276 -16 5 1243 309 26 0 0 chr6 86279448 86279486 -63237551 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1243 22 70 0 0 chr6 86279487 86279530 -63237507 + AT_rich Low_complexity Low_complexity 1 43 0 5 1243 693 232 166 0 chr6 86280033 86280184 -63236853 + B3A SINE B2 1 176 -22 5 1243 1151 110 35 6 chr6 86280587 86280760 -63236277 + B2_Mm1t SINE B2 2 179 -14 5 1243 365 69 386 10 chr6 86280791 86280892 -63236145 + B2_Mm2 SINE B2 47 185 -10 5 1243 470 263 122 22 chr6 86281071 86281300 -63235737 - Lx8 LINE L1 0 7473 7222 5 1243 197 224 17 0 chr6 86281319 86281377 -63235660 + GA-rich Low_complexity Low_complexity 3 61 0 5 1243 731 308 34 11 chr6 86281379 86281642 -63235395 - Lx8 LINE L1 -236 7237 6969 5 1243 681 157 0 0 chr6 86281659 86281767 -63235270 - B1_Mur4 SINE Alu 0 150 43 5 1243 222 6 5 155 chr6 86281853 86282060 -63234977 + CT-rich Low_complexity Low_complexity 2 177 0 5 1243 611 239 183 43 chr6 86282061 86282362 -63234675 - L1MB5 LINE L1 -101 6073 5731 5 1243 1889 179 23 20 chr6 86282517 86282742 -63234295 + RLTR15 LTR ERVK 1 230 -129 5 1243 1199 55 0 7 chr6 86282742 86282889 -63234148 + B1_Mm SINE Alu 2 147 0 5 1243 1889 179 23 20 chr6 86282889 86283006 -63234031 + RLTR15 LTR ERVK 231 344 -15 5 1243 325 115 26 0 chr6 86283046 86283124 -63233913 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1243 738 267 23 0 chr6 86283157 86283333 -63233704 + B3A SINE B2 1 180 -18 5 1243 189 0 0 0 chr6 86283566 86283587 -63233450 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1243 350 235 133 0 chr6 86283607 86283705 -63233332 + RSINE1 SINE B4 11 121 -44 5 1243 355 279 84 45 chr6 86283706 86283860 -63233177 + MLT1B LTR MaLR 223 382 -8 6 1243 21 0 0 0 chr6 86283969 86283990 -63233047 + AT_rich Low_complexity Low_complexity 1 21 0 6 1243 191 298 143 105 chr6 86284334 86284439 -63232598 - L2b LINE L2 -21 3354 3246 6 1243 1201 284 55 23 chr6 86284719 86285127 -63231910 - MTD LTR MaLR -15 404 1 6 1243 837 230 88 14 chr6 86286018 86286234 -63230803 + B4A SINE B4 2 233 -59 6 1243 643 225 31 155 chr6 86286238 86286279 -63230758 + B3A SINE B2 1 36 -162 6 1243 1188 22 0 7 chr6 86286279 86286416 -63230621 + B1_Mm SINE Alu 1 136 -11 6 1243 210 37 0 0 chr6 86286416 86286443 -63230594 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1243 643 225 31 155 chr6 86286443 86286626 -63230411 + B3A SINE B2 37 197 -1 6 1243 21 0 0 0 chr6 86286626 86286647 -63230390 + AT_rich Low_complexity Low_complexity 1 21 0 6 1243 1007 82 162 6 chr6 86286651 86286811 -63230226 + B2_Mm2 SINE B2 1 185 -10 6 1243 1387 63 34 0 chr6 86286814 86286989 -63230048 + B2_Mm2 SINE B2 1 181 -14 6 1243 279 211 0 0 chr6 86287012 86287064 -63229973 + B3 SINE B2 94 145 -71 6 1243 646 228 7 62 chr6 86287259 86287404 -63229633 - B1_Mus1 SINE Alu 0 148 12 6 1243 386 307 87 60 chr6 86287264 86287482 -63229555 - ID_B1 SINE B4 0 224 1 6 1243 513 0 0 0 chr6 86287514 86287571 -63229466 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 6 1243 2006 183 161 47 chr6 86287595 86288106 -63228931 + RMER4B LTR ERVK 17 585 0 6 1243 204 15 88 44 chr6 86288122 86288190 -63228847 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 1243 283 267 52 0 chr6 86288317 86288394 -63228643 + MLT1H1 LTR MaLR 478 556 -4 6 1243 232 277 58 35 chr6 86288846 86288932 -63228105 + L2c LINE L2 3250 3337 -50 6 1243 21 0 0 0 chr6 86289319 86289340 -63227697 + AT_rich Low_complexity Low_complexity 1 21 0 6 1243 438 204 53 132 chr6 86289394 86289546 -63227491 + MT2B LTR ERVL 125 264 -337 6 1243 544 226 13 70 chr6 86289427 86289449 -63227588 + ID_B1 SINE B4 77 221 0 6 1243 998 91 0 0 chr6 86289449 86289581 -63227456 + B1_Mm SINE Alu 16 147 0 6 1243 229 284 93 13 chr6 86289625 86289700 -63227337 + ID4_ SINE ID 2 82 -1 6 1243 2107 145 78 6 chr6 86289802 86290162 -63226875 - ORR1B1 LTR MaLR -8 386 1 6 1243 5964 137 44 51 chr6 86290162 86291277 -63225760 - ORR1B1-int LTR MaLR 0 1963 857 6 1243 2711 146 147 6 chr6 86291301 86291805 -63225232 + RMER1B Other Other 491 1065 -1 6 1243 616 219 9 0 chr6 86291822 86291936 -63225101 - B3 SINE B2 -97 119 5 6 1243 329 133 310 34 chr6 86292156 86292272 -63224765 - B2_Mm2 SINE B2 -1 194 47 6 1243 1057 95 61 67 chr6 86292315 86292495 -63224542 - B2_Mm1t SINE B2 -14 179 1 6 1243 339 276 27 62 chr6 86292529 86292641 -63224396 + B3 SINE B2 34 141 -75 6 1243 23 33 0 0 chr6 86292719 86292749 -63224288 + AT_rich Low_complexity Low_complexity 1 30 0 6 1243 351 243 250 29 chr6 86292841 86292981 -63224056 + ID_B1 SINE B4 2 172 -52 6 1243 288 127 0 0 chr6 86293153 86293208 -63223829 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 6 1243 198 0 0 0 chr6 86293254 86293276 -63223761 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1243 21 0 0 0 chr6 86293290 86293311 -63223726 + AT_rich Low_complexity Low_complexity 1 21 0 6 1243 289 345 81 43 chr6 86293373 86293558 -63223479 + MLT-int LTR MaLR 1264 1455 -280 6 1243 459 15 60 0 chr6 86293563 86293630 -63223407 - L1Md_F3 LINE L1 0 6584 6514 6 1243 204 220 20 0 chr6 86294076 86294126 -63222911 + G-rich Low_complexity Low_complexity 2 52 0 6 1243 2046 151 93 0 chr6 86294724 86295069 -63221968 + ORR1C1 LTR MaLR 1 377 -1 6 1243 308 363 0 29 chr6 86295151 86295256 -63221781 - MLT1K LTR MaLR -326 269 168 6 1243 465 336 81 64 chr6 86295634 86295917 -63221120 + B4A SINE B4 5 292 0 6 1243 188 214 0 18 chr6 86295925 86295982 -63221055 + (CATA)n Simple_repeat Simple_repeat 4 59 0 6 1243 573 313 8 0 chr6 86296793 86296924 -63220113 - RSINE1 SINE B4 -31 134 3 6 1243 274 292 75 98 chr6 86296931 86297064 -63219973 + MT2B LTR ERVL 131 260 -341 6 1243 811 174 36 7 chr6 86296962 86297101 -63219936 + B1F SINE Alu 6 148 -1 6 1243 493 299 128 21 chr6 86297239 86297427 -63219610 - ID_B1 SINE B4 -5 219 12 6 1243 2211 119 39 30 chr6 86297631 86297995 -63219042 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1243 4812 61 46 16 chr6 86297995 86298631 -63218406 + IAPEz-int LTR ERVK 8 662 -5819 6 1243 460 66 0 32 chr6 86298631 86298694 -63218343 + IAPEz-int LTR ERVK 1359 1419 -5062 6 1243 1038 131 7 7 chr6 86298683 86298837 -63218200 + IAPEz-int LTR ERVK 2236 2389 -5291 6 1243 1619 46 11 125 chr6 86298837 86299109 -63217928 + RLTR10 LTR ERVK 150 390 0 6 1243 258 258 107 5 chr6 86299603 86299742 -63217295 + MLT1F LTR MaLR 108 271 -320 6 1243 376 256 128 41 chr6 86299794 86299958 -63217079 + MLT1F LTR MaLR 350 521 -28 6 1243 942 60 0 0 chr6 86299983 86300117 -63216920 + (TG)n Simple_repeat Simple_repeat 1 134 0 6 1243 807 324 11 18 chr6 86300122 86300402 -63216635 - B4 SINE B4 -13 279 2 6 1243 475 267 0 0 chr6 86300428 86300518 -63216519 - 5S rRNA rRNA -31 90 1 6 1243 813 238 0 72 chr6 86300528 86300736 -63216301 - B3A SINE B2 -4 194 2 6 1243 2377 207 22 56 chr6 86300945 86301101 -63215936 + Lx9 LINE L1 5272 5412 -435 6 1243 1476 23 28 6 chr6 86301101 86301277 -63215760 + B2_Mm2 SINE B2 2 181 -14 6 1243 2377 220 26 48 chr6 86301277 86301821 -63215216 + Lx9 LINE L1 5413 5996 -1648 6 1243 1264 47 0 0 chr6 86302464 86302612 -63214425 + B1_Mus1 SINE Alu 1 148 0 6 1243 270 0 0 0 chr6 86302626 86302656 -63214381 + (GGA)n Simple_repeat Simple_repeat 3 32 0 6 1243 901 279 26 32 chr6 86303268 86303817 -63213220 + Lx9 LINE L1 6933 7514 -130 6 1243 322 253 36 72 chr6 86303829 86303995 -63213042 + Lx9 LINE L1 7478 7637 -7 6 1243 1209 54 0 20 chr6 86304001 86304151 -63212886 - B1_Mus2 SINE Alu 0 147 1 6 1243 242 295 16 0 chr6 86304269 86304330 -63212707 + tRNA-Ala-GCY_ tRNA tRNA 4 65 -10 6 1243 258 259 17 0 chr6 86304281 86304339 -63212698 + ID4 SINE ID 23 81 -2 6 1243 1178 277 95 50 chr6 86304489 86304551 -63212486 - MTEa LTR MaLR -4 375 322 6 1243 1125 108 0 0 chr6 86304551 86304718 -63212319 + (GGGA)n Simple_repeat Simple_repeat 4 170 0 6 1243 1178 277 95 50 chr6 86304718 86305012 -63212025 - MTEa LTR MaLR -58 321 3 6 1243 227 337 102 0 chr6 86305245 86305343 -63211694 + MER5A DNA MER1_type 35 142 -47 6 1243 916 249 9 32 chr6 86305625 86305845 -63211192 + ID_B1 SINE B4 9 223 -1 6 1243 443 286 95 99 chr6 86305847 86306130 -63210907 + B4A SINE B4 1 282 -10 6 1243 1130 280 57 50 chr6 86306197 86306671 -63210366 - BGLII_B LTR ERVK -8 433 11 6 1243 391 292 108 19 chr6 86306839 86306996 -63210041 + B3A SINE B2 4 174 -24 6 1243 293 254 0 0 chr6 86307841 86307904 -63209133 - BC1_Mm scRNA scRNA -68 84 22 6 1243 679 314 58 40 chr6 86307936 86308211 -63208826 + B4A SINE B4 13 292 0 6 1243 1324 86 10 46 chr6 86308369 86308564 -63208473 + B2_Mm1t SINE B2 3 190 -3 6 1243 244 185 73 18 chr6 86308676 86308731 -63208306 - ID_B1 SINE B4 -4 220 163 6 1243 248 312 96 11 chr6 86308687 86308716 -63208321 + ID_B1 SINE B4 68 169 -55 6 1243 260 261 123 0 chr6 86308716 86308781 -63208256 + PB1D10 SINE Alu 16 88 -29 6 1243 606 199 299 6 chr6 86308881 86309048 -63207989 + B3 SINE B2 1 216 0 6 1243 225 0 0 0 chr6 86309130 86309155 -63207882 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1243 363 154 31 0 chr6 86309797 86309862 -63207175 - RLTR18 LTR ERVK 0 616 550 6 1243 751 173 62 35 chr6 86309866 86310010 -63207027 + B1_Mur4 SINE Alu 1 148 -2 6 1243 570 29 0 0 chr6 86310027 86310095 -63206942 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 6 1243 2975 120 72 79 chr6 86310116 86310687 -63206350 - RLTR18 LTR ERVK -44 572 6 6 1243 660 240 27 0 chr6 86311269 86311419 -63205618 - B3 SINE B2 -62 154 1 6 1243 801 210 78 29 chr6 86311488 86311694 -63205343 - B3 SINE B2 0 216 1 6 1243 617 228 123 0 chr6 86312114 86312276 -63204761 + B3A SINE B2 1 182 -16 6 1243 458 317 21 0 chr6 86312326 86312471 -63204566 + B3 SINE B2 35 182 -34 6 1243 507 33 0 0 chr6 86312473 86312534 -63204503 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 1243 387 0 0 0 chr6 86312534 86312576 -63204461 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1243 242 318 0 81 chr6 86312757 86312851 -63204186 - MamGypLTR1a LTR Gypsy -334 448 355 6 1243 296 182 0 35 chr6 86313086 86313143 -63203894 + PB1D9 SINE Alu 5 59 -61 6 1243 514 171 0 0 chr6 86313143 86313225 -63203812 + (CAGAGA)n Simple_repeat Simple_repeat 5 86 0 6 1243 652 112 0 45 chr6 86313225 86313337 -63203700 + B1_Mur2 SINE Alu 42 148 -1 6 1243 24 0 0 0 chr6 86313344 86313368 -63203669 + AT_rich Low_complexity Low_complexity 1 24 0 6 1243 1197 182 19 0 chr6 86313399 86313608 -63203429 + B3 SINE B2 4 216 0 6 1243 408 264 45 9 chr6 86315117 86315228 -63201809 + L1M5 LINE L1 5708 5822 -357 6 1243 449 247 49 32 chr6 86316196 86316363 -63200674 - PB1D10 SINE Alu -12 299 1 6 1243 616 245 38 6 chr6 86316363 86316438 -63200599 - ID SINE ID -142 82 3 6 1243 945 195 80 25 chr6 86317042 86317242 -63199795 + B3 SINE B2 1 211 -5 6 1243 762 192 217 17 chr6 86317261 86317441 -63199596 + B3 SINE B2 1 216 0 6 1243 279 0 0 0 chr6 86317607 86317638 -63199399 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1243 892 47 0 0 chr6 86317640 86317747 -63199290 - B1_Mm SINE Alu -13 134 28 6 1243 720 176 53 0 chr6 86317752 86317883 -63199154 - B1_Mus1 SINE Alu -1 147 10 6 1243 394 281 70 8 chr6 86317991 86318120 -63198917 + L2a LINE L2 3276 3412 -14 6 1243 404 285 154 16 chr6 86318163 86318409 -63198628 + B4A SINE B4 1 280 -12 7 1243 1123 86 56 0 chr6 86320176 86320338 -63196699 + B2_Mm1a SINE B2 1 171 -22 7 1243 525 242 136 13 chr6 86320501 86320656 -63196381 + MTD LTR MaLR 8 181 -238 7 1243 234 158 0 0 chr6 86320656 86320694 -63196343 - MurSatRep1 Unknown Unknown -1871 266 229 7 1243 263 333 0 0 chr6 86320960 86321032 -63196005 + ID_B1 SINE B4 132 203 -21 7 1243 761 208 36 0 chr6 86321123 86321291 -63195746 + B2_Mm2 SINE B2 3 176 -19 7 1243 415 283 0 58 chr6 86321860 86321980 -63195057 + PB1D7 SINE Alu 1 113 -7 7 1243 536 247 104 139 chr6 86322064 86322266 -63194771 - B3A SINE B2 0 195 1 7 1243 916 126 35 81 chr6 86322705 86322903 -63194134 + B2_Mm2 SINE B2 1 189 -6 7 1243 1403 152 162 30 chr6 86323511 86323850 -63193187 - ORR1C2 LTR MaLR 0 384 1 7 1243 183 217 29 42 chr6 86323850 86323910 -63193127 + MIRc SINE MIR 117 180 -88 7 1243 1200 68 0 0 chr6 86324053 86324199 -63192838 + B1_Mus1 SINE Alu 1 146 -2 7 1243 238 260 119 46 chr6 86324237 86324346 -63192691 + PB1 SINE Alu 1 117 0 7 1243 333 316 0 0 chr6 86324346 86324436 -63192601 + ID4_ SINE ID 7 96 -56 7 1243 522 250 97 0 chr6 86324481 86324605 -63192432 + RSINE1 SINE B4 4 139 -26 7 1243 967 129 55 17 chr6 86324619 86324800 -63192237 - B2_Mm2 SINE B2 -7 188 1 7 1243 361 279 227 45 chr6 86324901 86325055 -63191982 + B3A SINE B2 1 182 -13 7 1243 537 243 136 0 chr6 86325123 86325263 -63191774 - RSINE1 SINE B4 -4 161 3 7 1243 566 113 8 38 chr6 86325303 86325419 -63191618 + B1_Mur4 SINE Alu 7 147 -3 7 1243 321 319 61 17 chr6 86325466 86325581 -63191456 - B3 SINE B2 -95 121 2 7 1243 322 264 21 52 chr6 86326212 86326308 -63190729 - PB1D9 SINE Alu -10 110 18 7 1243 1145 54 7 20 chr6 86326983 86327133 -63189904 + B1_Mus1 SINE Alu 1 148 0 7 1243 623 186 73 0 chr6 86327183 86327307 -63189730 - B3 SINE B2 -7 209 77 7 1243 973 264 0 0 chr6 86327337 86327534 -63189503 + B3 SINE B2 14 210 -6 7 1243 519 162 30 42 chr6 86328094 86328206 -63188831 - B1_Mur4 SINE Alu -3 147 37 7 1243 469 224 62 45 chr6 86328474 86328586 -63188451 - PB1D9 SINE Alu -1 119 6 7 1243 913 142 143 56 chr6 86329199 86329396 -63187641 - ORR1D1 LTR MaLR -8 366 151 7 1243 901 133 35 7 chr6 86329396 86329540 -63187497 + B2_Mm1t SINE B2 2 149 -44 7 1243 343 68 136 0 chr6 86329568 86329627 -63187410 + B2_Mm1a SINE B2 127 193 0 7 1243 653 173 18 17 chr6 86329622 86329765 -63187272 - ORR1D1 LTR MaLR -206 153 1 7 1243 525 289 46 13 chr6 86329828 86329979 -63187058 - RSINE1 SINE B4 -6 159 4 7 1243 513 189 22 0 chr6 86330279 86330369 -63186668 - B1_Mur2 SINE Alu -8 141 50 7 1243 1646 21 0 20 chr6 86330369 86330565 -63186472 + B2_Mm1a SINE B2 2 193 0 7 1243 501 184 7 214 chr6 86330565 86330619 -63186418 - B1_Mur3 SINE Alu -96 53 27 7 1243 225 0 0 0 chr6 86331036 86331061 -63185976 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1243 1056 110 0 0 chr6 86331063 86331209 -63185828 - B1_Mus1 SINE Alu 0 148 3 7 1243 970 123 6 41 chr6 86331218 86331387 -63185650 - RLTR31A_Mm LTR ERVK -187 397 235 7 1243 520 86 0 0 chr6 86331385 86331455 -63185582 - RLTR31A_Mm LTR ERVK -514 70 1 7 1243 586 205 62 16 chr6 86331466 86331595 -63185442 + B1_Mus2 SINE Alu 1 135 -12 7 1243 261 0 0 0 chr6 86331595 86331624 -63185413 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1243 449 241 0 0 chr6 86331632 86331711 -63185326 + B3A SINE B2 1 79 -119 7 1243 1315 101 0 6 chr6 86331804 86331983 -63185054 + B2_Mm2 SINE B2 1 178 -17 7 1243 493 195 122 23 chr6 86331995 86332086 -63184951 - RLTR30 LTR ERV1 -60 319 221 7 1243 3928 113 28 35 chr6 86332086 86332689 -63184348 + MT2B LTR ERVL 3 601 0 7 1243 493 195 122 23 chr6 86332689 86332728 -63184309 - RLTR30 LTR ERV1 -159 220 178 7 1243 996 195 21 21 chr6 86332756 86332945 -63184092 - RLTR30 LTR ERV1 -177 202 14 7 1243 476 278 96 0 chr6 86332985 86333161 -63183876 + L1M2 LINE L1 5626 5816 -484 7 1243 225 128 21 21 chr6 86333162 86333210 -63183827 + ZP3AR Satellite Satellite 38 85 -127 7 1243 265 232 0 0 chr6 86333167 86333223 -63183814 + ID SINE ID 2 57 -167 7 1243 2572 200 54 127 chr6 86333364 86334218 -63182819 + RMER1C Other Other 551 1342 0 7 1243 253 198 235 47 chr6 86334255 86334329 -63182708 - PB1D9 SINE Alu 0 120 29 7 1243 333 0 0 0 chr6 86334329 86334366 -63182671 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 7 1243 809 47 36 66 chr6 86334366 86334503 -63182534 - B1_Mus1 SINE Alu -8 140 8 7 1243 4189 82 24 6 chr6 86334473 86335103 -63181934 + RLTR19B LTR ERVK 75 715 0 7 1243 965 179 76 35 chr6 86335139 86335336 -63181701 + B3 SINE B2 5 209 -7 7 1243 216 0 0 0 chr6 86335925 86335949 -63181088 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1243 216 0 0 0 chr6 86335975 86335999 -63181038 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 7 1243 669 151 0 196 chr6 86336019 86336192 -63180845 - B1_Mur2 SINE Alu -10 139 1 7 1243 529 179 19 9 chr6 86336450 86336557 -63180480 + PB1D9 SINE Alu 5 112 -8 7 1243 267 189 0 0 chr6 86336559 86336612 -63180425 + A-rich Low_complexity Low_complexity 1 53 0 7 1243 699 186 65 6 chr6 86336646 86336814 -63180223 + Tigger7 DNA MER2_type 2295 2472 -19 7 1243 341 291 48 0 chr6 86337132 86337235 -63179802 - PB1D10 SINE Alu 0 117 10 7 1243 424 219 12 0 chr6 86337768 86337850 -63179187 + ID4 SINE ID 1 83 0 7 1243 564 171 65 0 chr6 86338052 86338175 -63178862 + B1F SINE Alu 2 132 -17 7 1243 279 158 169 13 chr6 86338371 86338448 -63178589 + PB1D10 SINE Alu 27 115 -2 7 1243 314 227 0 74 chr6 86338458 86338539 -63178498 + ID4 SINE ID 2 76 -7 7 1243 298 250 16 0 chr6 86339475 86339539 -63177498 - B4 SINE B4 -7 285 221 7 1243 1143 94 16 42 chr6 86339577 86339729 -63177308 + B2_Mm2 SINE B2 2 153 -42 7 1243 1005 147 37 26 chr6 86339729 86339918 -63177119 - B2_Mm2 SINE B2 -3 192 2 7 1243 1143 94 16 42 chr6 86339918 86339954 -63177083 + B2_Mm2 SINE B2 154 185 -10 7 1243 207 0 0 0 chr6 86339958 86339981 -63177056 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7 1243 862 242 47 0 chr6 86339981 86340171 -63176866 - B3 SINE B2 -17 199 1 7 1243 700 216 49 49 chr6 86340180 86340384 -63176653 - B4 SINE B4 -87 205 2 7 1243 1047 225 14 5 chr6 86340386 86340605 -63176432 - ID_B1 SINE B4 -1 223 3 7 1243 330 26 0 0 chr6 86340611 86340650 -63176387 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1243 682 252 144 53 chr6 86340688 86340952 -63176085 - B4A SINE B4 -3 289 2 7 1243 700 188 7 53 chr6 86341209 86341361 -63175676 + B1_Mur4 SINE Alu 6 150 0 7 1243 981 199 56 10 chr6 86341378 86341576 -63175461 + B3 SINE B2 3 209 -7 7 1243 458 119 25 172 chr6 86342502 86342565 -63174472 + B3 SINE B2 1 62 -154 7 1243 719 167 13 59 chr6 86342565 86342718 -63174319 - B1_Mur4 SINE Alu -1 149 4 7 1243 458 119 25 172 chr6 86342718 86342776 -63174261 + B3 SINE B2 63 104 -112 7 1243 273 57 0 0 chr6 86342776 86342811 -63174226 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1243 1234 34 0 13 chr6 86342811 86342960 -63174077 - B1_Mus2 SINE Alu 0 147 1 7 1243 406 281 11 0 chr6 86342962 86343051 -63173986 + B3 SINE B2 100 189 -27 7 1243 399 256 93 113 chr6 86343232 86343382 -63173655 + ID_B1 SINE B4 6 152 -72 7 1243 388 248 26 0 chr6 86343374 86343487 -63173550 + B3 SINE B2 101 216 0 7 1243 245 229 0 32 chr6 86343532 86343595 -63173442 + B4 SINE B4 9 69 -223 7 1243 387 0 0 0 chr6 86343616 86343659 -63173378 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1243 261 0 0 0 chr6 86344023 86344052 -63172985 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1243 231 170 21 0 chr6 86344166 86344213 -63172824 - ID4 SINE ID -34 49 2 7 1243 636 216 68 31 chr6 86344594 86344785 -63172252 + B3A SINE B2 1 198 0 7 1243 409 250 9 9 chr6 86345470 86345579 -63171458 + RSINE1 SINE B4 54 162 -3 7 1243 38 22 0 0 chr6 86345604 86345649 -63171388 + AT_rich Low_complexity Low_complexity 1 45 0 7 1243 318 277 33 16 chr6 86347572 86347693 -63169344 + MER34A1 LTR ERV1 22 144 -443 7 1243 280 124 0 16 chr6 86347705 86347764 -63169273 + B3A SINE B2 1 55 -161 7 1243 445 196 311 0 chr6 86347804 86347952 -63169085 + B3A SINE B2 5 198 0 7 1243 322 262 73 66 chr6 86348503 86348654 -63168383 + MER34A1 LTR ERV1 229 380 -207 7 1243 537 176 10 10 chr6 86348738 86348841 -63168196 - PB1D9 SINE Alu -6 114 12 7 1243 227 277 208 8 chr6 86348841 86348854 -63168183 - B4A SINE B4 -67 221 82 7 1243 180 111 0 0 chr6 86348964 86348991 -63168046 + (CACG)n Simple_repeat Simple_repeat 1 27 0 7 1243 840 243 34 14 chr6 86349012 86349221 -63167816 + B4 SINE B4 5 217 -75 7 1243 263 198 53 138 chr6 86349224 86349318 -63167719 + MT2B LTR ERVL 155 240 -361 7 1243 485 161 25 0 chr6 86349240 86349321 -63167716 + B1_Mus1 SINE Alu 5 87 -61 7 1243 311 221 0 42 chr6 86349762 86349833 -63167204 + B1_Mur4 SINE Alu 83 150 0 7 1243 232 352 0 11 chr6 86350040 86350129 -63166908 + RSINE1 SINE B4 14 101 -64 7 1243 601 293 87 8 chr6 86350187 86350428 -63166609 + MER67A LTR ERV1 282 541 -2 7 1243 667 157 0 53 chr6 86350467 86350655 -63166382 + (TCTCTG)n Simple_repeat Simple_repeat 1 178 0 7 1243 547 175 26 110 chr6 86351531 86351685 -63165352 + B1_Mur1 SINE Alu 1 141 -8 7 1243 351 121 0 0 chr6 86351690 86351748 -63165289 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1243 438 272 19 10 chr6 86351943 86352047 -63164990 - PB1D7 SINE Alu -7 113 9 8 1243 206 105 26 0 chr6 86352138 86352176 -63164861 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 8 1243 342 243 65 37 chr6 86352190 86352297 -63164740 + PB1D7 SINE Alu 2 111 -9 8 1243 189 0 0 0 chr6 86352350 86352371 -63164666 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 8 1243 758 192 20 14 chr6 86352377 86352525 -63164512 + B1_Mur4 SINE Alu 2 150 0 8 1243 332 173 167 11 chr6 86352534 86352624 -63164413 + L1MB5 LINE L1 5893 5995 -184 8 1243 210 37 0 0 chr6 86352753 86352780 -63164257 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 8 1243 825 180 7 0 chr6 86352957 86353096 -63163941 + B1_Mur4 SINE Alu 5 144 -6 8 1243 212 184 20 0 chr6 86353108 86353157 -63163880 + GA-rich Low_complexity Low_complexity 3 52 0 8 1243 1044 128 176 0 chr6 86353183 86353371 -63163666 + URR1B DNA MER1_type 5 225 0 8 1243 580 184 79 8 chr6 86355662 86355788 -63161249 - B1_Mm SINE Alu 0 147 13 8 1243 282 253 11 117 chr6 86355718 86355812 -63161225 - MT2B LTR ERVL -361 240 157 8 1243 264 294 141 16 chr6 86355862 86355990 -63161047 - ID_B1 SINE B4 0 224 81 8 1243 485 239 0 9 chr6 86356021 86356131 -63160906 - B1F2 SINE Alu -35 114 6 8 1243 670 174 191 13 chr6 86356379 86356564 -63160473 - B3 SINE B2 -17 199 3 8 1243 26 0 0 0 chr6 86356578 86356604 -63160433 + AT_rich Low_complexity Low_complexity 1 26 0 8 1243 541 140 36 27 chr6 86356909 86357019 -63160018 + B1_Mus1 SINE Alu 17 127 -21 8 1243 1285 27 0 0 chr6 86357632 86357779 -63159258 - B1_Mus2 SINE Alu 0 147 1 8 1243 22 0 0 0 chr6 86357823 86357845 -63159192 + AT_rich Low_complexity Low_complexity 1 22 0 8 1243 226 247 0 49 chr6 86358219 86358300 -63158737 + T-rich Low_complexity Low_complexity 1 77 0 8 1243 1327 72 5 119 chr6 86358351 86358380 -63158657 - B2_Mm2 SINE B2 0 195 167 8 1243 1410 83 0 6 chr6 86358380 86358561 -63158476 + B2_Mm2 SINE B2 2 181 -14 8 1243 1327 72 5 119 chr6 86358561 86358750 -63158287 - B2_Mm2 SINE B2 -29 166 2 8 1243 214 270 54 33 chr6 86358755 86358847 -63158190 - PB1D7 SINE Alu -1 119 26 8 1243 484 233 78 0 chr6 86358869 86358985 -63158052 - RSINE1 SINE B4 -38 127 3 8 1243 216 0 0 0 chr6 86359008 86359032 -63158005 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1243 468 175 211 0 chr6 86359032 86359136 -63157901 - B1_Mur2 SINE Alu -9 140 13 8 1243 347 204 183 0 chr6 86359165 86359258 -63157779 - B1_Mm SINE Alu -19 128 19 8 1243 336 238 0 0 chr6 86359287 86359371 -63157666 + (TA)n Simple_repeat Simple_repeat 1 84 0 8 1243 953 95 48 0 chr6 86359373 86359520 -63157517 - B2_Mm2 SINE B2 -33 162 9 8 1243 643 238 74 21 chr6 86359839 86360028 -63157009 - B3 SINE B2 -17 199 1 8 1243 1151 168 37 0 chr6 86360069 86360283 -63156754 - URR1A DNA MER1_type 0 226 5 8 1243 28 0 0 0 chr6 86360395 86360423 -63156614 + AT_rich Low_complexity Low_complexity 1 28 0 8 1243 306 247 56 11 chr6 86360569 86360659 -63156378 - PB1D10 SINE Alu -10 107 14 8 1243 247 274 26 40 chr6 86360600 86360676 -63156361 - ID_B1 SINE B4 -70 154 80 8 1243 449 257 62 0 chr6 86361061 86361174 -63155863 - RSINE1 SINE B4 -43 122 3 8 1243 366 23 0 0 chr6 86361191 86361234 -63155803 + (TC)n Simple_repeat Simple_repeat 2 44 0 8 1243 495 0 0 0 chr6 86361547 86361602 -63155435 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1243 1127 35 20 27 chr6 86361658 86361805 -63155232 + B1_Mm SINE Alu 2 147 0 8 1243 369 0 0 0 chr6 86361835 86361876 -63155161 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1243 274 268 122 44 chr6 86361880 86361970 -63155067 + PB1 SINE Alu 31 127 0 8 1243 495 136 121 42 chr6 86362094 86362209 -63154828 + B1_Mur2 SINE Alu 2 136 -13 8 1243 189 0 0 0 chr6 86362210 86362231 -63154806 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1243 381 284 9 0 chr6 86362437 86362553 -63154484 - PB1D10 SINE Alu 0 117 1 8 1243 239 348 9 9 chr6 86362614 86362730 -63154307 + PB1D10 SINE Alu 2 117 0 8 1243 356 263 137 0 chr6 86363005 86363100 -63153937 - PB1D10 SINE Alu -9 108 1 8 1243 248 274 0 0 chr6 86363102 86363153 -63153884 + polypyrimidine Low_complexity Low_complexity 3 53 0 8 1243 355 268 223 0 chr6 86363638 86363750 -63153287 - B1F2 SINE Alu -11 138 2 8 1243 318 233 298 10 chr6 86364403 86364507 -63152530 - B1F SINE Alu -13 136 3 8 1243 377 341 23 8 chr6 86364838 86364971 -63152066 + B1F2 SINE Alu 1 135 -14 8 1243 230 219 71 32 chr6 86365005 86365083 -63151954 + ID4 SINE ID 4 81 -71 8 1243 277 22 67 0 chr6 86365129 86365174 -63151863 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 8 1243 234 182 148 49 chr6 86365177 86365258 -63151779 - PB1D10 SINE Alu -6 111 23 8 1243 186 43 0 0 chr6 86365272 86365295 -63151742 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1243 1174 49 0 14 chr6 86365295 86365433 -63151604 - B1_Mus2 SINE Alu -9 138 1 8 1243 635 236 184 6 chr6 86365465 86365644 -63151393 - B3 SINE B2 -5 211 1 8 1243 907 121 56 21 chr6 86365993 86366137 -63150900 - B1_Mur4 SINE Alu -1 149 1 8 1243 243 226 57 0 chr6 86366450 86366503 -63150534 - B1F2 SINE Alu -89 60 5 8 1243 842 261 34 5 chr6 86366671 86366875 -63150162 + B3 SINE B2 3 212 -4 8 1243 2658 179 76 65 chr6 86366913 86367516 -63149521 - RMER1B Other Other -17 1049 440 8 1243 373 223 0 41 chr6 86367527 86367625 -63149412 + PB1D9 SINE Alu 2 95 -25 8 1243 779 109 80 7 chr6 86367838 86367976 -63149061 + B1_Mur3 SINE Alu 2 149 0 8 1243 315 308 45 77 chr6 86367979 86368134 -63148903 + B4 SINE B4 71 220 -72 8 1243 734 190 7 0 chr6 86368003 86368140 -63148897 + B1_Mur2 SINE Alu 12 149 0 8 1243 253 273 45 0 chr6 86368244 86368310 -63148727 + B1F SINE Alu 46 114 -35 8 1243 275 279 14 68 chr6 86368353 86368426 -63148611 + ID4_ SINE ID 2 70 -13 8 1243 743 256 9 59 chr6 86368471 86368691 -63148346 + B3 SINE B2 3 211 -5 8 1243 427 304 45 0 chr6 86371757 86371869 -63145168 + RSINE1 SINE B4 3 119 -46 8 1243 1441 58 37 5 chr6 86371869 86372058 -63144979 + B2_Mm2 SINE B2 1 195 0 8 1243 25 0 0 0 chr6 86372107 86372132 -63144905 + AT_rich Low_complexity Low_complexity 1 25 0 8 1243 966 142 13 7 chr6 86372132 86372281 -63144756 + B1_Mur4 SINE Alu 1 150 0 8 1243 574 289 94 33 chr6 86372539 86372814 -63144223 - B4A SINE B4 0 292 1 8 1243 27 29 0 0 chr6 86373115 86373149 -63143888 + AT_rich Low_complexity Low_complexity 1 34 0 8 1243 353 172 65 75 chr6 86375925 86376032 -63141005 - PB1D9 SINE Alu -1 148 43 8 1243 283 204 0 0 chr6 86376033 86376087 -63140950 - B1_Mur4 SINE Alu -75 75 22 8 1243 231 239 45 150 chr6 86376169 86376220 -63140817 + PB1D7 SINE Alu 2 120 0 8 1243 323 135 73 98 chr6 86376220 86376302 -63140735 + ID_B1 SINE B4 145 224 0 8 1244 1149 60 150 0 chr6 86377170 86377337 -63139700 - B2_Mm2 SINE B2 -3 192 1 8 1244 510 301 71 7 chr6 86378104 86378258 -63138779 - RSINE1 SINE B4 0 165 2 8 1244 492 229 131 0 chr6 86378260 86378382 -63138655 - ID_B1 SINE B4 0 224 87 8 1244 727 236 78 10 chr6 86378450 86378643 -63138394 - B3 SINE B2 -10 206 1 8 1244 602 26 13 0 chr6 86379238 86379314 -63137723 + (GA)n Simple_repeat Simple_repeat 2 78 0 8 1244 465 86 12 24 chr6 86379342 86379425 -63137612 - L1Md_F2 LINE L1 0 6582 6501 8 1244 906 212 33 33 chr6 86379446 86379661 -63137376 + B3 SINE B2 2 216 0 8 1244 1262 20 0 13 chr6 86379701 86379850 -63137187 + B1_Mus2 SINE Alu 1 147 0 8 1244 449 144 35 80 chr6 86379946 86380059 -63136978 - B1_Mus1 SINE Alu -39 109 2 8 1244 437 296 72 0 chr6 86383228 86383353 -63133684 + RSINE1 SINE B4 3 136 -29 8 1244 606 269 64 27 chr6 86383414 86383601 -63133436 - B3A SINE B2 -4 194 1 8 1244 501 124 62 0 chr6 86383621 86383718 -63133319 - PB1D9 SINE Alu 0 120 18 8 1244 539 259 148 4 chr6 86383724 86384006 -63133031 - ORR1D1 LTR MaLR -23 347 1 8 1244 1183 43 0 0 chr6 86384118 86384258 -63132779 + B1_Mus2 SINE Alu 1 140 -7 8 1244 213 290 14 14 chr6 86384366 86384436 -63132601 + AluF_3 SINE Alu 138 207 -104 8 1244 1001 205 84 0 chr6 86384573 86384763 -63132274 + B3 SINE B2 1 206 -10 8 1244 312 213 0 47 chr6 86384798 86384862 -63132175 + B1F1 SINE Alu 1 61 -88 8 1244 878 177 0 7 chr6 86385804 86385952 -63131085 - B1_Mus2 SINE Alu 0 147 1 8 1244 461 250 7 36 chr6 86385995 86386132 -63130905 + B3 SINE B2 6 138 -78 8 1244 626 186 289 0 chr6 86386582 86386738 -63130299 + B3 SINE B2 1 201 -15 8 1244 301 76 62 25 chr6 86387097 86387113 -63129924 + T-rich Low_complexity Low_complexity 72 85 0 8 1244 1208 34 0 20 chr6 86387113 86387263 -63129774 - B1_Mm SINE Alu 0 147 1 8 1244 301 76 62 25 chr6 86387263 86387327 -63129710 + T-rich Low_complexity Low_complexity 3 71 0 8 1244 524 155 41 10 chr6 86387886 86387984 -63129053 + B1_Mur4 SINE Alu 7 107 -43 8 1244 640 149 26 0 chr6 86389129 86389243 -63127794 + PB1D10 SINE Alu 1 117 0 9 1244 539 238 71 0 chr6 86389246 86389372 -63127665 + B1_Mm SINE Alu 1 135 -12 9 1244 583 276 99 10 chr6 86389545 86389725 -63127312 - B3A SINE B2 -6 189 1 9 1244 452 174 70 0 chr6 86389903 86389989 -63127048 + B1_Mur2 SINE Alu 53 144 -5 9 1244 684 311 18 6 chr6 86389995 86390163 -63126874 + B3A SINE B2 1 170 -28 9 1244 529 281 77 15 chr6 86390293 86390423 -63126614 + B1F SINE Alu 12 149 0 9 1244 1224 61 0 0 chr6 86390431 86390578 -63126459 + B1_Mm SINE Alu 1 147 0 9 1244 204 125 0 0 chr6 86390578 86390610 -63126427 + (GA)n Simple_repeat Simple_repeat 2 33 0 9 1244 364 358 36 18 chr6 86390737 86390902 -63126135 + L1ME1 LINE L1 5661 5828 -351 9 1244 662 242 60 65 chr6 86390907 86391106 -63125931 + B3A SINE B2 1 198 0 9 1244 520 200 73 73 chr6 86391163 86391287 -63125750 + B1_Mur1 SINE Alu 26 149 0 9 1244 482 287 16 0 chr6 86391454 86391583 -63125454 + B4A SINE B4 1 131 -161 9 1244 278 143 82 0 chr6 86391616 86391653 -63125384 + B4A SINE B4 196 236 -56 9 1244 457 238 30 0 chr6 86391653 86391754 -63125283 + B3 SINE B2 4 107 -109 9 1244 288 77 0 0 chr6 86391780 86391819 -63125218 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1244 442 285 94 94 chr6 86391852 86391865 -63125172 + B4 SINE B4 80 107 -185 9 1244 461 191 49 98 chr6 86391865 86391987 -63125050 + PB1D9 SINE Alu 4 119 -1 9 1244 442 285 94 94 chr6 86391987 86392065 -63124972 + B4 SINE B4 108 292 0 9 1244 1144 120 34 0 chr6 86392094 86392269 -63124768 + B2_Mm2 SINE B2 1 181 -14 9 1244 1278 34 0 0 chr6 86392281 86392428 -63124609 - B1_Mus1 SINE Alu 0 148 2 9 1244 312 143 0 0 chr6 86392469 86392518 -63124519 + B1_Mur1 SINE Alu 101 149 0 9 1244 1105 50 43 0 chr6 86392521 86392660 -63124377 + B1_Mus1 SINE Alu 2 146 -2 9 1244 599 316 31 46 chr6 86392697 86392893 -63124144 + ID_B1 SINE B4 1 193 -31 9 1244 369 259 12 12 chr6 86392897 86392979 -63124058 + ID_B1 SINE B4 91 172 -52 9 1244 760 235 90 48 chr6 86392985 86393173 -63123864 + B3 SINE B2 11 206 -10 9 1244 902 153 0 0 chr6 86393178 86393322 -63123715 + B1_Mur4 SINE Alu 1 144 -6 9 1244 758 220 13 0 chr6 86394047 86394197 -63122840 - ID_B1 SINE B4 -7 217 66 9 1244 341 231 0 37 chr6 86394189 86394270 -63122767 + PB1D10 SINE Alu 10 87 -30 9 1244 1834 167 48 6 chr6 86394270 86394583 -63122454 - MTC LTR MaLR 0 421 96 9 1244 1523 119 26 0 chr6 86394582 86394808 -63122229 - ORR1B1 LTR MaLR -8 386 155 9 1244 326 166 84 21 chr6 86394816 86394849 -63122188 + RMER17D LTR ERVK 255 285 -604 9 1244 891 50 0 62 chr6 86394849 86395041 -63121996 + (TC)n Simple_repeat Simple_repeat 1 180 0 9 1244 326 166 84 21 chr6 86395041 86395188 -63121849 + RMER17D LTR ERVK 286 445 -444 9 1244 1185 45 17 17 chr6 86395188 86395368 -63121669 + (TC)n Simple_repeat Simple_repeat 1 180 0 9 1244 410 296 123 27 chr6 86396410 86396556 -63120481 - RSINE1 SINE B4 0 165 6 9 1244 622 180 0 0 chr6 86396586 86396686 -63120351 + B1_Mus1 SINE Alu 1 100 -48 9 1244 1038 119 0 0 chr6 86396708 86397078 -63119959 + (TG)n Simple_repeat Simple_repeat 1 370 0 9 1244 289 324 0 0 chr6 86397080 86397151 -63119886 - ID4_ SINE ID -11 72 2 9 1244 1605 37 5 0 chr6 86397515 86397704 -63119333 - B2_Mm1a SINE B2 -3 190 1 9 1244 369 234 57 5 chr6 86397743 86397855 -63119182 + B1_Mur1 SINE Alu 1 144 -5 9 1244 231 276 0 17 chr6 86397855 86397914 -63119123 + GA-rich Low_complexity Low_complexity 5 62 0 9 1244 250 89 0 51 chr6 86397917 86397928 -63119109 + (CAAAAA)n Simple_repeat Simple_repeat 4 14 0 9 1244 904 129 79 0 chr6 86397928 86398067 -63118970 + B1_Mur4 SINE Alu 1 150 0 9 1244 250 89 0 51 chr6 86398067 86398114 -63118923 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 9 1244 227 271 203 0 chr6 86398126 86398185 -63118852 + tRNA-Ala-GCY_ tRNA tRNA 1 71 -4 9 1244 224 356 23 0 chr6 86398342 86398429 -63118608 + PB1D10 SINE Alu 1 89 -28 9 1244 383 279 82 0 chr6 86398353 86398475 -63118562 + ID_B1 SINE B4 93 224 0 9 1244 514 221 124 57 chr6 86398824 86399001 -63118036 - B3 SINE B2 0 216 28 9 1244 700 247 6 67 chr6 86399040 86399205 -63117832 + RSINE1 SINE B4 3 157 -8 9 1244 509 251 57 34 chr6 86399230 86399407 -63117630 + B3 SINE B2 31 211 -5 9 1244 234 235 73 0 chr6 86399433 86399501 -63117536 - ID_B1 SINE B4 -53 171 99 9 1244 439 267 133 0 chr6 86399531 86399696 -63117341 - ID_B1 SINE B4 -2 222 36 9 1244 384 314 150 0 chr6 86400047 86400187 -63116850 + B3A SINE B2 3 163 -35 9 1244 595 182 35 8 chr6 86400206 86400324 -63116713 + B3A SINE B2 3 115 -78 9 1244 368 269 67 0 chr6 86400353 86400457 -63116580 + B3 SINE B2 100 210 -6 9 1244 1030 238 11 0 chr6 86400505 86400694 -63116343 - B3 SINE B2 -25 191 1 9 1244 22 35 0 0 chr6 86400694 86400723 -63116314 + AT_rich Low_complexity Low_complexity 1 29 0 9 1244 507 269 69 0 chr6 86400733 86400863 -63116174 + B1F2 SINE Alu 10 148 -1 9 1244 1091 102 6 6 chr6 86400868 86401026 -63116011 + B2_Mm2 SINE B2 1 158 -37 9 1244 289 283 17 42 chr6 86401288 86401406 -63115631 - PB1D10 SINE Alu 0 117 3 9 1244 916 64 40 8 chr6 86401441 86401567 -63115470 + B1_Mus1 SINE Alu 19 148 0 9 1244 993 107 73 45 chr6 86401607 86401637 -63115400 - B2_Mm2 SINE B2 -12 183 159 9 1244 192 77 0 0 chr6 86401637 86401663 -63115374 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 9 1244 1130 41 89 0 chr6 86401663 86401809 -63115228 - B2_Mm1t SINE B2 -33 160 2 9 1244 1251 27 7 0 chr6 86401837 86401983 -63115054 - B1_Mus2 SINE Alu 0 147 1 9 1244 1015 149 0 0 chr6 86402347 86402495 -63114542 - B1_Mur4 SINE Alu 0 150 3 9 1244 733 259 43 28 chr6 86402520 86402731 -63114306 - B3 SINE B2 -2 214 1 9 1244 529 221 11 22 chr6 86402734 86402853 -63114184 - B1_Mm SINE Alu -25 122 1 9 1244 342 257 80 138 chr6 86402853 86403008 -63114029 - MT2B LTR ERVL -446 155 15 9 1244 796 233 20 11 chr6 86403049 86403233 -63113804 + B3A SINE B2 1 174 -21 9 1244 198 0 0 0 chr6 86403244 86403266 -63113771 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1244 309 330 0 39 chr6 86403434 86403447 -63113590 - RSINE1 SINE B4 -63 102 3 9 1244 680 88 0 0 chr6 86403447 86403538 -63113499 - B2_Mm2 SINE B2 -103 92 2 9 1244 272 254 0 0 chr6 86403828 86403887 -63113150 + PB1D7 SINE Alu 46 104 -16 9 1244 652 241 22 22 chr6 86403988 86404124 -63112913 + RSINE1 SINE B4 12 147 -18 9 1244 825 222 205 61 chr6 86404467 86404553 -63112484 + MTEb LTR MaLR 2 99 -280 9 1244 242 0 61 0 chr6 86404553 86404586 -63112451 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1244 1144 58 0 0 chr6 86404586 86404723 -63112314 - B1_Mm SINE Alu -9 138 2 9 1244 825 222 205 61 chr6 86404723 86404947 -63112090 + MTEb LTR MaLR 100 357 -22 9 1244 272 267 193 127 chr6 86405027 86405177 -63111860 + B4 SINE B4 68 227 -65 9 1244 519 244 11 144 chr6 86405182 86405369 -63111668 + RSINE1 SINE B4 4 165 0 9 1244 186 43 0 0 chr6 86405372 86405395 -63111642 + (TC)n Simple_repeat Simple_repeat 2 24 0 9 1244 974 201 82 0 chr6 86405411 86405605 -63111432 + B3 SINE B2 2 211 -5 9 1244 240 260 38 94 chr6 86405853 86405959 -63111078 + MT2B2 LTR ERVL 145 244 -340 9 1244 580 191 18 9 chr6 86405880 86405991 -63111046 + PB1D9 SINE Alu 9 120 0 9 1244 248 286 45 56 chr6 86406003 86406092 -63110945 + PB1D9 SINE Alu 33 120 0 9 1244 551 301 76 49 chr6 86406210 86406239 -63110798 - B3 SINE B2 -25 191 167 9 1244 213 39 0 0 chr6 86406239 86406265 -63110772 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1244 551 301 76 49 chr6 86406265 86406420 -63110617 - B3 SINE B2 -50 166 2 9 1244 254 280 160 0 chr6 86406437 86406537 -63110500 - PB1D10 SINE Alu 0 117 2 9 1244 22 56 0 0 chr6 86406542 86406578 -63110459 + AT_rich Low_complexity Low_complexity 1 36 0 9 1244 932 257 14 29 chr6 86406580 86406788 -63110249 - B3 SINE B2 -6 210 6 9 1244 480 256 22 36 chr6 86406813 86406951 -63110086 + B1F2 SINE Alu 1 136 -13 9 1244 546 275 84 0 chr6 86407560 86407691 -63109346 - RSINE1 SINE B4 -16 149 8 9 1244 1020 153 0 0 chr6 86408411 86408561 -63108476 + B1_Mur4 SINE Alu 1 150 0 9 1244 600 194 64 7 chr6 86408584 86408724 -63108313 + B1_Mur3 SINE Alu 1 148 -1 9 1244 933 106 219 0 chr6 86408830 86408969 -63108068 + B2_Mm2 SINE B2 1 157 -38 9 1244 369 0 0 0 chr6 86408969 86409010 -63108027 + (TAAAA)n Simple_repeat Simple_repeat 3 43 0 9 1244 933 106 219 0 chr6 86409010 86409030 -63108007 + B2_Mm2 SINE B2 158 194 -1 9 1244 1221 49 0 0 chr6 86409035 86409178 -63107859 + B1_Mus2 SINE Alu 5 147 0 9 1244 465 19 0 0 chr6 86409191 86409245 -63107792 + (GA)n Simple_repeat Simple_repeat 2 55 0 9 1244 790 164 0 22 chr6 86409275 86409412 -63107625 + B1_Mur4 SINE Alu 17 150 0 9 1244 1156 223 152 9 chr6 86409464 86409794 -63107243 - MTEa LTR MaLR -2 377 1 9 1244 4616 256 102 58 chr6 86409797 86411291 -63105746 - MTEa-int LTR MaLR -4 1576 17 9 1244 1213 243 131 12 chr6 86411299 86411627 -63105410 - MTEa LTR MaLR 0 379 11 9 1244 611 241 14 0 chr6 86411627 86411768 -63105269 + B1_Mur3 SINE Alu 1 143 -6 9 1244 1375 89 11 0 chr6 86411819 86411998 -63105039 - B2_Mm2 SINE B2 -14 181 1 9 1244 243 0 0 0 chr6 86412698 86412725 -63104312 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1244 326 295 0 83 chr6 86412742 86412783 -63104254 - B4A SINE B4 -6 286 251 1 1244 1448 79 5 0 chr6 86412783 86412972 -63104065 - B2_Mm1a SINE B2 -2 191 2 1 1244 326 295 0 83 chr6 86412972 86413026 -63104011 - B4A SINE B4 -42 250 199 1 1244 425 233 8 98 chr6 86413004 86413037 -63104000 - B4 SINE B4 -49 243 215 1 1244 804 197 14 7 chr6 86413037 86413185 -63103852 - B1_Mur4 SINE Alu 0 150 2 1 1244 879 261 44 31 chr6 86413185 86413492 -63103545 - B4 SINE B4 -23 269 10 1 1244 281 200 12 12 chr6 86413596 86413677 -63103360 + (TTTG)n Simple_repeat Simple_repeat 1 81 0 1 1244 805 50 0 0 chr6 86413678 86413777 -63103260 - B1_Mm SINE Alu -2 145 47 1 1244 417 194 250 10 chr6 86414073 86414177 -63102860 + B1_Mur1 SINE Alu 7 135 -14 1 1244 216 97 0 0 chr6 86414432 86414463 -63102574 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1 1244 234 0 0 0 chr6 86414463 86414489 -63102548 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1244 235 301 133 19 chr6 86414716 86414821 -63102216 + PB1D10 SINE Alu 1 117 0 1 1244 728 250 11 77 chr6 86415095 86415277 -63101760 + B3 SINE B2 1 170 -46 1 1244 207 0 0 0 chr6 86415282 86415305 -63101732 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1244 595 247 68 84 chr6 86415360 86415669 -63101368 + RMER10A LTR ERVL 126 429 -13 1 1244 21 36 0 0 chr6 86415676 86415704 -63101333 + AT_rich Low_complexity Low_complexity 1 28 0 1 1244 314 136 0 0 chr6 86416212 86416256 -63100781 - B1_Mur1 SINE Alu -21 128 85 1 1244 1340 92 38 0 chr6 86416298 86416482 -63100555 + B2_Mm2 SINE B2 4 194 -1 1 1244 314 127 73 0 chr6 86416493 86416548 -63100489 - RMER10A LTR ERVL -33 409 351 1 1244 417 217 65 9 chr6 86416687 86416794 -63100243 + PB1D9 SINE Alu 1 113 -7 1 1244 481 213 153 30 chr6 86417020 86417151 -63099886 - RSINE1 SINE B4 -17 148 2 1 1244 717 167 37 15 chr6 86417520 86417654 -63099383 - B1_Mur2 SINE Alu -10 139 3 1 1244 3022 57 8 0 chr6 86417764 86418148 -63098889 - MTB LTR MaLR -13 387 1 1 1244 230 155 11 97 chr6 86418564 86418634 -63098403 + T-rich Low_complexity Low_complexity 23 87 0 1 1244 1212 55 0 7 chr6 86418634 86418782 -63098255 - B1_Mus1 SINE Alu -1 147 1 1 1244 230 155 11 97 chr6 86418782 86418804 -63098233 + T-rich Low_complexity Low_complexity 3 22 0 1 1244 366 230 69 26 chr6 86418845 86418961 -63098076 - B3 SINE B2 -95 121 1 1 1244 1258 99 0 42 chr6 86419014 86419203 -63097834 - B2_Mm2 SINE B2 -14 181 1 1 1244 421 271 35 28 chr6 86419450 86419594 -63097443 - RSINE1 SINE B4 -17 148 4 1 1244 228 300 0 28 chr6 86419597 86419669 -63097368 + ID_B1 SINE B4 148 217 -7 1 1244 804 73 36 9 chr6 86420512 86420623 -63096414 - B1_Mus1 SINE Alu -15 133 20 1 1244 197 65 32 0 chr6 86420631 86420662 -63096375 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1244 677 137 20 0 chr6 86420680 86420782 -63096255 + B1_Mur2 SINE Alu 33 136 -13 1 1244 914 232 43 19 chr6 86421108 86421315 -63095722 - B3 SINE B2 -4 212 1 1 1244 268 175 191 0 chr6 86421657 86421720 -63095317 + B1_Mur1 SINE Alu 70 144 -5 1 1244 353 333 0 33 chr6 86422508 86422749 -63094288 + G-rich Low_complexity Low_complexity 1 232 0 1 1244 409 241 105 24 chr6 86423702 86423825 -63093212 - PB1D7 SINE Alu -10 138 15 1 1244 782 76 161 0 chr6 86423995 86424113 -63092924 - B1_Mus1 SINE Alu -10 138 2 1 1244 697 257 20 7 chr6 86424354 86424507 -63092530 + ID_B1 SINE B4 2 156 -68 1 1244 1016 203 177 89 chr6 86424507 86424885 -63092152 - RMER16 LTR ERVK 0 533 1 1 1244 257 315 0 0 chr6 86424886 86424959 -63092078 + ID_B1 SINE B4 152 224 0 1 1244 493 259 175 0 chr6 86424967 86425133 -63091904 + B3 SINE B2 5 199 -17 1 1244 295 312 131 48 chr6 86425824 86425992 -63091045 - L2a LINE L2 -40 3386 3205 1 1244 325 237 79 0 chr6 86426165 86426241 -63090796 + B1F SINE Alu 10 91 -58 1 1244 543 276 102 40 chr6 86426248 86426425 -63090612 + ID_B1 SINE B4 3 190 -34 1 1244 379 256 0 0 chr6 86426499 86426581 -63090456 - ID4_ SINE ID 0 83 2 1 1244 569 167 59 0 chr6 86426882 86426984 -63090053 - B1_Mur4 SINE Alu -42 108 1 1 1244 218 336 40 32 chr6 86428193 86428319 -63088718 + L2 LINE L2 2652 2778 -641 1 1244 646 286 20 40 chr6 86428358 86428558 -63088479 + ID_B1 SINE B4 27 222 -2 1 1244 684 198 0 8 chr6 86428799 86428921 -63088116 + B1_Mur2 SINE Alu 16 136 -13 1 1244 256 216 0 0 chr6 86429198 86429249 -63087788 - B1F SINE Alu -93 56 6 1 1244 229 337 11 11 chr6 86429249 86429285 -63087752 - ID_B1 SINE B4 -87 137 51 1 1244 248 148 17 69 chr6 86429876 86429934 -63087103 + RLTR25B LTR ERVK 428 482 -546 1 1244 513 188 94 0 chr6 86429891 86429987 -63087050 + B1_Mur2 SINE Alu 40 144 -5 1 1244 314 217 141 24 chr6 86431147 86431232 -63085805 - PB1D9 SINE Alu -2 118 24 1 1244 647 204 0 72 chr6 86431271 86431423 -63085614 - B1_Mur2 SINE Alu -7 142 4 1 1244 333 0 0 0 chr6 86431436 86431473 -63085564 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1244 486 298 67 24 chr6 86431511 86431676 -63085361 - ID_B1 SINE B4 -19 205 34 1 1244 346 293 48 67 chr6 86431780 86431971 -63085066 - B4 SINE B4 -84 208 10 1 1244 457 293 22 36 chr6 86431975 86432113 -63084924 - B1_Mm SINE Alu -6 141 6 1 1244 573 88 0 0 chr6 86432113 86432193 -63084844 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1244 1631 21 11 0 chr6 86432312 86432498 -63084539 - B2_Mm1a SINE B2 -4 189 2 1 1244 509 291 38 12 chr6 86432551 86432711 -63084326 - RSINE1 SINE B4 0 165 2 1 1244 479 238 102 8 chr6 86432757 86432884 -63084153 + B1_Mur2 SINE Alu 10 148 -1 1 1244 605 190 103 0 chr6 86433024 86433140 -63083897 + B1_Mur4 SINE Alu 10 137 -13 1 1244 225 0 0 0 chr6 86433140 86433165 -63083872 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1244 1449 75 5 0 chr6 86433173 86433359 -63083678 + B2_Mm1a SINE B2 2 188 -5 1 1244 427 254 84 8 chr6 86433481 86433600 -63083437 - RSINE1 SINE B4 -37 128 1 1 1244 248 276 0 17 chr6 86433962 86434021 -63083016 - MLT1E2 LTR MaLR -569 58 1 1 1244 386 226 85 11 chr6 86434057 86434151 -63082886 + ID_B1 SINE B4 124 224 0 1 1244 604 299 57 31 chr6 86434179 86434372 -63082665 + B3A SINE B2 1 198 0 1 1244 340 295 8 67 chr6 86434411 86434531 -63082506 + PB1D10 SINE Alu 3 115 -2 1 1244 743 184 88 0 chr6 86434757 86434893 -63082144 + B1_Mur1 SINE Alu 2 149 0 1 1244 276 149 0 0 chr6 86434893 86434940 -63082097 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1244 186 133 0 0 chr6 86435063 86435093 -63081944 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1244 1134 87 43 12 chr6 86435124 86435288 -63081749 - B2_Mm2 SINE B2 -26 169 1 1 1244 274 258 45 0 chr6 86435296 86435362 -63081675 - ID SINE ID -138 86 18 1 1244 579 224 24 35 chr6 86435359 86435520 -63081517 + B3 SINE B2 35 191 -4 1 1244 724 79 20 0 chr6 86435526 86435627 -63081410 + B1_Mus1 SINE Alu 2 104 -44 1 1244 798 243 7 0 chr6 86435724 86435876 -63081161 + ID_B1 SINE B4 72 224 0 1 1244 248 314 42 49 chr6 86435753 86435897 -63081140 - YREP_Mm Unknown Unknown -1516 296 154 1 1244 336 233 0 0 chr6 86435916 86435976 -63081061 + ID4_ SINE ID 24 83 0 1 1244 300 111 0 0 chr6 86436274 86436319 -63080718 + (GGA)n Simple_repeat Simple_repeat 3 47 0 1 1244 275 282 265 24 chr6 86436414 86436625 -63080412 + MER33 DNA MER1_type 3 264 -60 1 1244 217 286 0 77 chr6 86436642 86436733 -63080304 - B4 SINE B4 -169 123 40 1 1244 1011 98 139 6 chr6 86436880 86437045 -63079992 - B2_Mm1t SINE B2 -4 189 3 1 1244 249 290 70 70 chr6 86437051 86437072 -63079965 - PB1D10 SINE Alu 0 117 3 1 1244 310 245 106 0 chr6 86437072 86437166 -63079871 - ID_B1 SINE B4 -37 187 84 1 1244 1081 128 0 70 chr6 86438571 86438772 -63078265 - B2_Mm2 SINE B2 -8 187 1 1 1244 219 114 0 0 chr6 86438846 86438881 -63078156 + (GTTTG)n Simple_repeat Simple_repeat 1 35 0 1 1244 971 103 0 0 chr6 86438882 86439018 -63078019 - B1_Mur4 SINE Alu -1 149 14 1 1244 1173 57 0 0 chr6 86439040 86439180 -63077857 + B1_Mm SINE Alu 2 141 -6 1 1244 183 42 0 0 chr6 86439182 86439206 -63077831 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1244 734 170 13 72 chr6 86439234 86439386 -63077651 + B1_Mus2 SINE Alu 5 147 0 1 1244 1305 89 15 30 chr6 86439402 86439600 -63077437 + B2_Mm2 SINE B2 1 195 0 1 1244 318 284 84 14 chr6 86439620 86439763 -63077274 - RSINE1 SINE B4 -12 153 1 1 1244 487 236 9 19 chr6 86439808 86439916 -63077121 - B1_Mur1 SINE Alu -2 147 41 1 1244 257 242 42 42 chr6 86439837 86439932 -63077105 - MT2B LTR ERVL -325 276 182 1 1244 315 241 83 100 chr6 86440201 86440321 -63076716 + B1_Mur2 SINE Alu 10 127 -22 1 1244 2884 105 44 0 chr6 86440319 86440730 -63076307 + RLTR10C LTR ERVK 8 436 0 1 1244 386 266 136 8 chr6 86440768 86440893 -63076144 - B3 SINE B2 -75 141 1 1 1244 193 349 58 0 chr6 86440899 86440985 -63076052 + MIRb SINE MIR 113 203 -65 1 1244 429 194 122 0 chr6 86441065 86441163 -63075874 - B1_Mur4 SINE Alu -40 110 1 1 1244 252 223 0 0 chr6 86441179 86441238 -63075799 - PB1D9 SINE Alu 0 149 70 1 1244 225 0 0 0 chr6 86441251 86441276 -63075761 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1244 666 222 234 8 chr6 86441280 86441575 -63075462 + MTC LTR MaLR 18 419 0 1 1244 3830 16 2 0 chr6 86441614 86442056 -63074981 - MT2_Mm LTR ERVL -43 450 8 1 1244 611 160 9 9 chr6 86442047 86442154 -63074883 + B1_Mur3 SINE Alu 43 149 0 1 1244 808 200 133 0 chr6 86442176 86442356 -63074681 + B3 SINE B2 1 204 -12 1 1244 345 100 0 0 chr6 86442359 86442409 -63074628 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1244 189 0 0 0 chr6 86442615 86442636 -63074401 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1244 698 35 0 0 chr6 86442636 86442721 -63074316 - B1_Mus2 SINE Alu 0 147 63 1 1244 462 206 27 27 chr6 86442732 86442842 -63074195 - PB1D9 SINE Alu -8 112 3 1 1244 468 299 62 14 chr6 86442865 86443075 -63073962 - ID_B1 SINE B4 -3 221 2 1 1244 557 142 140 70 chr6 86443084 86443198 -63073839 - B1_Mus1 SINE Alu -2 146 25 1 1244 23 33 0 0 chr6 86443226 86443256 -63073781 + AT_rich Low_complexity Low_complexity 1 30 0 1 1244 568 275 37 27 chr6 86443262 86443449 -63073588 - B3A SINE B2 -1 197 9 1 1244 380 312 0 52 chr6 86443495 86443610 -63073427 + PB1D7 SINE Alu 11 119 -1 1 1244 445 284 63 0 chr6 86443725 86443820 -63073217 - RSINE1 SINE B4 -61 104 4 1 1244 568 186 4 8 chr6 86444352 86444467 -63072570 - B1_Mus1 SINE Alu -7 113 2 1 1244 406 257 141 60 chr6 86444467 86444491 -63072546 - B4 SINE B4 -62 188 70 1 1244 225 133 0 0 chr6 86444509 86444521 -63072516 + (A)n Simple_repeat Simple_repeat 1 12 0 1 1244 692 176 0 191 chr6 86444521 86444638 -63072399 + B1_Mus1 SINE Alu 1 94 -54 1 1244 1281 27 0 0 chr6 86444638 86444785 -63072252 - B1_Mus2 SINE Alu 0 147 1 1 1244 692 176 0 191 chr6 86444785 86444850 -63072187 + B1_Mus1 SINE Alu 95 148 0 1 1244 225 133 0 0 chr6 86444850 86444882 -63072155 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1244 814 198 42 30 chr6 86444882 86445049 -63071988 - B3 SINE B2 -16 200 32 1 1244 180 0 0 0 chr6 86445167 86445187 -63071850 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1244 468 0 0 0 chr6 86446172 86446224 -63070813 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1244 587 261 29 35 chr6 86446226 86446397 -63070640 + B3A SINE B2 26 195 -3 1 1244 426 200 529 0 chr6 86446461 86446597 -63070440 + ID_B1 SINE B4 17 224 0 1 1244 289 328 80 51 chr6 86446708 86446846 -63070191 - RSINE1 SINE B4 -14 151 10 1 1244 577 259 65 55 chr6 86447192 86447392 -63069645 + ID_B1 SINE B4 2 203 -21 1 1244 369 156 33 11 chr6 86447411 86447502 -63069535 + GA-rich Low_complexity Low_complexity 1 93 0 1 1244 459 250 60 8 chr6 86448057 86448190 -63068847 - ID_B1 SINE B4 -3 221 82 1 1244 254 50 0 24 chr6 86448191 86448232 -63068805 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1 1244 289 298 192 0 chr6 86448235 86448339 -63068698 - ID_B1 SINE B4 -18 206 83 1 1244 417 263 20 20 chr6 86448597 86448698 -63068339 - B1F SINE Alu -48 101 1 1 1244 241 293 73 96 chr6 86448698 86448723 -63068314 - B4A SINE B4 -91 167 69 1 1244 486 182 0 0 chr6 86448774 86448851 -63068186 - PB1D9 SINE Alu -10 110 34 1 1244 552 30 0 0 chr6 86448870 86448936 -63068101 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1 1244 245 235 73 0 chr6 86448946 86449014 -63068023 - ID4 SINE ID -10 73 1 1 1244 237 200 0 0 chr6 86449031 86449071 -63067966 + B3A SINE B2 2 41 -157 1 1244 780 177 7 41 chr6 86449072 86449219 -63067818 + B1_Mus1 SINE Alu 1 142 -6 1 1244 457 175 10 10 chr6 86449219 86449323 -63067714 + GA-rich Low_complexity Low_complexity 2 105 0 1 1244 338 217 168 21 chr6 86449342 86449468 -63067569 + B3 SINE B2 36 179 -19 1 1244 395 296 41 0 chr6 86449494 86449592 -63067445 - ID_B1 SINE B4 -20 204 103 1 1244 969 237 24 0 chr6 86450335 86450542 -63066495 + B3 SINE B2 2 213 -3 1 1244 791 177 0 33 chr6 86450559 86450715 -63066322 + B1_Mur4 SINE Alu 1 147 -1 1 1244 275 257 32 23 chr6 86450731 86450827 -63066210 + B1F1 SINE Alu 1 97 -217 1 1244 437 286 0 43 chr6 86451154 86451271 -63065766 - B1_Mur1 SINE Alu -36 113 2 1 1244 315 281 50 40 chr6 86451191 86451291 -63065746 - B4 SINE B4 -126 166 66 1 1244 773 138 27 61 chr6 86451555 86451702 -63065335 - B1_Mus2 SINE Alu -1 146 5 1 1244 1078 116 0 0 chr6 86451822 86451968 -63065069 - B1_Mus1 SINE Alu 0 148 3 1 1244 909 158 20 0 chr6 86451995 86452141 -63064896 - B1_Mur3 SINE Alu 0 149 1 1 1244 737 191 0 0 chr6 86452315 86452430 -63064607 + B1_Mur3 SINE Alu 30 144 -5 1 1244 291 85 0 0 chr6 86452433 86452480 -63064557 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1244 291 284 25 0 chr6 86452498 86452579 -63064458 - ID_B1 SINE B4 -61 163 81 1 1244 230 292 15 30 chr6 86452625 86452692 -63064345 - ID_B1 SINE B4 -79 145 80 1 1244 698 123 7 12 chr6 86452871 86453008 -63064029 - B1_Mur4 SINE Alu 0 150 15 1 1244 707 200 37 0 chr6 86453408 86453543 -63063494 + B1F1 SINE Alu 10 149 0 1 1244 273 284 0 64 chr6 86453558 86453667 -63063370 + PB1D10 SINE Alu 1 102 -15 1 1244 504 289 0 0 chr6 86453737 86453858 -63063179 + ID_B1 SINE B4 102 222 -2 1 1244 504 307 70 103 chr6 86453862 86454163 -63062874 + B4A SINE B4 2 292 0 1 1244 180 0 0 0 chr6 86454269 86454289 -63062748 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1244 501 316 12 68 chr6 86454520 86454683 -63062354 - RSINE1 SINE B4 -9 156 3 1 1244 23 0 0 0 chr6 86454692 86454715 -63062322 + AT_rich Low_complexity Low_complexity 1 23 0 1 1244 244 200 22 0 chr6 86454863 86454908 -63062129 - ID_B1 SINE B4 -25 199 154 1 1244 909 63 127 0 chr6 86454960 86455086 -63061951 + B1_Mus1 SINE Alu 2 143 -5 1 1244 1100 111 6 0 chr6 86455092 86455263 -63061774 + (GGA)n Simple_repeat Simple_repeat 3 174 0 1 1244 243 0 0 0 chr6 86455871 86455898 -63061139 + (TCTG)n Simple_repeat Simple_repeat 3 29 0 1 1244 326 208 14 14 chr6 86455910 86455983 -63061054 + ID_B1 SINE B4 121 193 -31 1 1244 257 244 16 16 chr6 86456023 86456036 -63061001 + ORR1B1-int LTR MaLR 634 646 -863 1 1244 971 71 0 0 chr6 86456036 86456163 -63060874 + B1_Mus1 SINE Alu 1 127 -21 1 1244 499 267 40 0 chr6 86456236 86456337 -63060700 + RSINE1 SINE B4 59 163 -2 1 1244 351 166 49 10 chr6 86456824 86456915 -63060122 + PB1D9 SINE Alu 18 69 -51 1 1244 246 219 20 15 chr6 86456918 86457126 -63059911 + (TG)n Simple_repeat Simple_repeat 1 209 0 1 1244 345 75 0 0 chr6 86457127 86457180 -63059857 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1244 359 232 12 12 chr6 86457432 86457515 -63059522 + ID_B1 SINE B4 114 196 -28 1 1244 689 227 22 34 chr6 86457617 86457795 -63059242 - B3A SINE B2 -19 179 4 1 1244 455 155 134 0 chr6 86458211 86458308 -63058729 - PB1D10 SINE Alu -5 112 3 1 1244 923 88 81 0 chr6 86458353 86458489 -63058548 - B1_Mus1 SINE Alu 0 148 2 1 1244 1108 96 19 0 chr6 86458490 86458647 -63058390 - B2_Mm2 SINE B2 -3 192 33 1 1244 1222 41 0 13 chr6 86458648 86458797 -63058240 + B1_Mm SINE Alu 1 147 0 1 1244 467 274 19 19 chr6 86458839 86458947 -63058090 + B1_Mur2 SINE Alu 2 109 -40 1 1244 333 321 126 71 chr6 86458947 86459034 -63058003 + B4 SINE B4 87 292 0 1 1244 349 206 291 29 chr6 86459381 86459556 -63057481 + ID_B1 SINE B4 2 222 -2 1 1244 585 248 7 55 chr6 86459576 86459721 -63057316 + RSINE1 SINE B4 3 140 -25 1 1244 228 283 110 10 chr6 86459772 86459872 -63057165 + MLT1H-int LTR MaLR 776 885 -524 1 1244 309 238 49 12 chr6 86460063 86460144 -63056893 + B3A SINE B2 91 174 -24 1 1244 878 133 7 7 chr6 86460229 86460365 -63056672 + B1_Mus1 SINE Alu 2 137 -11 1 1244 258 238 32 0 chr6 86460363 86460426 -63056611 - RSINE1 SINE B4 -87 78 14 1 1244 752 325 25 30 chr6 86460436 86460671 -63056366 - B4A SINE B4 -58 234 1 1 1244 302 307 41 73 chr6 86460771 86460894 -63056143 + B1F1 SINE Alu 2 120 -29 1 1244 279 269 53 8 chr6 86460893 86460982 -63056055 + B1F SINE Alu 28 119 -30 1 1244 406 280 39 33 chr6 86461032 86461213 -63055824 + L1MB7 LINE L1 5810 5991 -193 1 1244 665 171 0 9 chr6 86461337 86461449 -63055588 - B1_Mus1 SINE Alu -37 111 1 1 1244 1325 71 29 0 chr6 86462015 86462185 -63054852 - B2_Mm2 SINE B2 -19 176 2 1 1244 185 0 40 0 chr6 86462254 86462279 -63054758 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1244 1117 44 15 0 chr6 86462279 86462415 -63054622 - B1_Mus1 SINE Alu -8 140 3 1 1244 485 191 134 34 chr6 86462417 86462536 -63054501 + B1_Mur2 SINE Alu 14 144 -5 1 1244 708 236 0 28 chr6 86462842 86462986 -63054051 + B1_Mur2 SINE Alu 1 140 -9 1 1244 529 246 74 95 chr6 86463088 86463225 -63053812 - B4A SINE B4 -72 220 85 1 1244 946 151 14 0 chr6 86463225 86463371 -63053666 - B1_Mur4 SINE Alu -1 149 2 1 1244 529 246 74 95 chr6 86463371 86463422 -63053615 - B4A SINE B4 -208 84 36 1 1244 332 230 36 107 chr6 86463434 86463546 -63053491 - PB1D7 SINE Alu -15 105 2 1 1244 1621 21 21 0 chr6 86463604 86463792 -63053245 + B2_Mm1a SINE B2 2 193 0 1 1244 530 190 8 108 chr6 86463797 86463927 -63053110 + PB1D10 SINE Alu 1 117 0 1 1244 1250 112 32 0 chr6 86463932 86464119 -63052918 + B2_Mm1a SINE B2 1 193 0 1 1244 188 217 22 0 chr6 86464287 86464333 -63052704 + MIR SINE MIR 119 165 -97 1 1244 464 244 160 16 chr6 86464333 86464458 -63052579 + ID_B1 SINE B4 82 224 0 1 1244 233 268 84 12 chr6 86464459 86464542 -63052495 + MIR SINE MIR 158 246 -16 1 1244 264 122 0 0 chr6 86464714 86464755 -63052282 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1244 1029 129 0 0 chr6 86464755 86464902 -63052135 - B1_Mus1 SINE Alu 0 148 2 1 1244 284 324 67 0 chr6 86464907 86465012 -63052025 - B1F SINE Alu -1 148 37 1 1244 299 130 111 0 chr6 86465085 86465139 -63051898 + B1F1 SINE Alu 89 148 -1 1 1244 207 0 0 0 chr6 86465148 86465171 -63051866 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1244 396 207 9 18 chr6 86465522 86465635 -63051402 + CT-rich Low_complexity Low_complexity 1 112 0 1 1244 613 196 0 95 chr6 86465680 86465838 -63051199 + B1_Mur2 SINE Alu 5 147 -2 1 1244 389 297 0 0 chr6 86465841 86465942 -63051095 + ID_B1 SINE B4 122 222 -2 1 1244 246 351 27 24 chr6 86466122 86466260 -63050777 - MIR SINE MIR -94 174 38 1 1244 593 244 91 62 chr6 86466673 86466817 -63050220 + ID_B1 SINE B4 2 147 -77 1 1244 974 163 74 33 chr6 86466817 86467032 -63050005 - URR1A DNA MER1_type -2 224 1 1 1244 593 244 91 62 chr6 86467032 86467097 -63049940 + ID_B1 SINE B4 148 217 -7 1 1244 1486 199 154 17 chr6 86467513 86467871 -63049166 - MTB_Mm LTR MaLR 0 407 1 1 1244 843 158 259 17 chr6 86468079 86468253 -63048784 - B3 SINE B2 0 216 1 1 1244 380 126 0 3 chr6 86468261 86468327 -63048710 + B3A SINE B2 52 117 -81 1 1244 447 35 0 0 chr6 86468327 86468384 -63048653 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1244 1220 68 0 0 chr6 86468694 86468841 -63048196 - B1_Mus2 SINE Alu 0 147 1 1 1244 184 30 0 57 chr6 86468871 86468906 -63048131 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1244 1240 48 0 0 chr6 86468913 86469059 -63047978 - B1_Mm SINE Alu 0 147 2 1 1244 381 252 48 10 chr6 86469082 86469186 -63047851 + PB1D10 SINE Alu 1 108 -9 1 1244 1235 48 0 0 chr6 86469225 86469372 -63047665 + B1_Mus2 SINE Alu 1 147 0 1 1244 1094 118 0 7 chr6 86469388 86469541 -63047496 - B2_Mm2 SINE B2 -42 153 2 1 1244 790 181 14 14 chr6 86469571 86469717 -63047320 - B1_Mur1 SINE Alu 0 149 4 1 1244 717 23 0 0 chr6 86469807 86469894 -63047143 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 1244 226 294 151 12 chr6 86469900 86469986 -63047051 + PB1D10 SINE Alu 1 98 -19 1 1244 561 225 59 13 chr6 86470327 86470347 -63046690 - B3A SINE B2 -23 175 157 1 1244 354 23 0 0 chr6 86470347 86470390 -63046647 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1244 561 225 59 13 chr6 86470390 86470522 -63046515 - B3A SINE B2 -42 156 16 1 1244 222 303 73 29 chr6 86470524 86470592 -63046445 + ID_B1 SINE B4 84 154 -70 1 1244 731 180 64 7 chr6 86470646 86470786 -63046251 - B1_Mur1 SINE Alu -1 148 1 1 1244 246 32 0 0 chr6 86470795 86470826 -63046211 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1244 1110 58 7 0 chr6 86470826 86470963 -63046074 - B1_Mus2 SINE Alu -9 138 1 1 1244 599 185 0 0 chr6 86471070 86471178 -63045859 - B1_Mus1 SINE Alu -16 132 25 1 1244 350 265 99 62 chr6 86471081 86471242 -63045795 - MT2B LTR ERVL -323 278 112 1 1244 402 297 43 0 chr6 86471234 86471372 -63045665 - ID_B1 SINE B4 -79 145 2 1 1244 243 234 123 15 chr6 86471403 86471468 -63045569 - Lx8 LINE L1 -202 7271 7200 1 1244 452 279 101 0 chr6 86471507 86471636 -63045401 - ID_B1 SINE B4 -1 223 82 1 1244 748 198 1 6 chr6 86471687 86471830 -63045207 - B1_Mur1 SINE Alu -5 144 8 1 1244 250 221 116 66 chr6 86471726 86471847 -63045190 - RLTR25B LTR ERVK -520 508 382 1 1244 224 244 144 46 chr6 86471868 86471962 -63045075 - B1F2 SINE Alu -9 111 1 1 1244 867 79 158 0 chr6 86471986 86472113 -63044924 + B1_Mus1 SINE Alu 2 148 0 1 1244 317 232 37 0 chr6 86472117 86472199 -63044838 + L1M4b LINE L1 2220 2304 -5030 1 1244 258 309 0 68 chr6 86472293 86472366 -63044671 - ID4 SINE ID -3 80 13 1 1244 31 0 0 0 chr6 86473016 86473047 -63043990 + AT_rich Low_complexity Low_complexity 1 31 0 1 1244 497 138 276 0 chr6 86473048 86473164 -63043873 - B1F1 SINE Alu -1 148 1 1 1244 313 242 15 29 chr6 86476002 86476183 -63040854 + (CGG)n Simple_repeat Simple_repeat 1 178 0 1 1244 186 167 0 0 chr6 86477525 86477561 -63039476 + (CGTG)n Simple_repeat Simple_repeat 4 39 0 1 1244 261 276 43 130 chr6 86477774 86477936 -63039101 - MIRb SINE MIR -33 235 88 1 1244 226 319 0 0 chr6 86478019 86478088 -63038949 - ID2 SINE ID -3 80 12 1 1244 272 246 31 0 chr6 86478123 86478188 -63038849 - PB1D10 SINE Alu -42 75 9 1 1244 608 217 0 0 chr6 86478199 86478314 -63038723 + PB1D9 SINE Alu 5 119 -1 1 1244 246 32 0 0 chr6 86478371 86478402 -63038635 + (C)n Simple_repeat Simple_repeat 1 31 0 1 1244 688 217 0 40 chr6 86479127 86479276 -63037761 - B1_Mur1 SINE Alu -5 144 2 1 1244 430 155 0 77 chr6 86479308 86479399 -63037638 - B1_Mus2 SINE Alu -2 145 62 1 1244 23 54 0 0 chr6 86479519 86479556 -63037481 + AT_rich Low_complexity Low_complexity 1 37 0 1 1244 1364 41 105 0 chr6 86479559 86479730 -63037307 - B2_Mm1t SINE B2 -3 190 2 1 1244 819 54 0 51 chr6 86479732 86479776 -63037261 - B1_Mus1 SINE Alu -1 147 37 1 1244 363 216 38 53 chr6 86479776 86479849 -63037188 - RLTR25B LTR ERVK -519 509 440 1 1244 200 34 0 33 chr6 86479849 86479879 -63037158 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1244 363 216 38 53 chr6 86479879 86479937 -63037100 - RLTR25B LTR ERVK -589 439 381 1 1244 1060 103 0 13 chr6 86479896 86480054 -63036983 - B2_Mm2 SINE B2 -5 190 35 1 1244 1082 96 7 0 chr6 86480365 86480511 -63036526 - B1_Mus1 SINE Alu 0 148 2 1 1244 637 173 105 45 chr6 86480765 86480898 -63036139 + B1_Mur1 SINE Alu 1 141 -8 1 1244 544 273 60 30 chr6 86481018 86481218 -63035819 + B3 SINE B2 1 206 -10 1 1244 285 29 0 0 chr6 86481321 86481355 -63035682 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1 1244 890 52 9 0 chr6 86481368 86481484 -63035553 - B1_Mus1 SINE Alu 0 148 32 1 1244 598 237 147 26 chr6 86481531 86481722 -63035315 - B3 SINE B2 -2 214 1 1 1244 196 351 164 7 chr6 86481939 86482091 -63034946 + MIR3 SINE MIR 10 185 -23 1 1244 492 268 5 95 chr6 86482992 86483015 -63034022 - ID_B1 SINE B4 -47 245 148 1 1244 803 197 0 28 chr6 86483015 86483156 -63033881 - B1_Mur1 SINE Alu -7 142 6 1 1244 492 268 5 95 chr6 86483156 86483170 -63033867 - ID_B1 SINE B4 -47 147 78 1 1244 888 128 15 22 chr6 86483190 86483326 -63033711 + B1_Mus1 SINE Alu 1 135 -13 1 1244 382 266 52 17 chr6 86483363 86483478 -63033559 - B3 SINE B2 -3 213 95 1 1244 388 324 50 95 chr6 86483423 86483488 -63033549 - B4A SINE B4 -13 279 160 1 1244 856 67 42 0 chr6 86483488 86483607 -63033430 - B1_Mus1 SINE Alu 0 148 25 1 1244 293 256 22 44 chr6 86483596 86483686 -63033351 - B3 SINE B2 -102 114 27 1 1244 388 324 50 95 chr6 86483607 86483665 -63033372 - B4A SINE B4 -13 159 49 1 1244 213 39 0 0 chr6 86483716 86483742 -63033295 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1244 1190 68 0 0 chr6 86483750 86483896 -63033141 - B1_Mm SINE Alu -1 146 1 1 1244 1374 77 11 0 chr6 86483926 86484109 -63032928 - B2_Mm1t SINE B2 -7 186 2 1 1244 240 179 0 0 chr6 86484111 86484150 -63032887 - B3A SINE B2 -158 40 2 1 1244 21 0 0 0 chr6 86484157 86484178 -63032859 + AT_rich Low_complexity Low_complexity 1 21 0 1 1244 1516 48 16 0 chr6 86484233 86484419 -63032618 - B2_Mm1a SINE B2 -3 190 2 1 1244 458 298 0 79 chr6 86484433 86484597 -63032440 - B3A SINE B2 0 198 48 1 1244 384 111 0 0 chr6 86484652 86484715 -63032322 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1244 522 279 34 130 chr6 86484719 86484861 -63032176 - B3A SINE B2 -32 166 37 1 1244 1415 52 9 94 chr6 86484861 86485074 -63031963 - B2_Mm2 SINE B2 0 195 1 1 1244 522 279 34 130 chr6 86485074 86485108 -63031929 - B3A SINE B2 -162 36 7 1 1244 595 197 25 17 chr6 86485109 86485228 -63031809 - PB1D9 SINE Alu 0 120 1 1 1244 207 100 0 0 chr6 86485229 86485259 -63031778 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1 1244 224 212 0 18 chr6 86485267 86485318 -63031719 + B3A SINE B2 2 48 -147 1 1244 395 181 14 0 chr6 86485452 86485524 -63031513 + ID4 SINE ID 2 74 -9 1 1244 224 264 0 71 chr6 86485776 86485874 -63031163 + A-rich Low_complexity Low_complexity 2 92 0 1 1244 799 189 14 0 chr6 86485977 86486120 -63030917 + B1_Mus2 SINE Alu 2 146 -1 1 1244 250 271 0 0 chr6 86486120 86486179 -63030858 + GA-rich Low_complexity Low_complexity 3 61 0 1 1244 876 158 158 0 chr6 86486188 86486365 -63030672 - B3 SINE B2 -10 206 2 1 1244 1427 81 11 0 chr6 86486390 86486576 -63030461 - B2_Mm1t SINE B2 -4 189 2 1 1244 409 315 18 9 chr6 86486673 86486785 -63030252 + PB1D10 SINE Alu 3 115 -2 1 1244 1203 76 134 0 chr6 86487029 86487201 -63029836 - B2_Mm2 SINE B2 0 195 1 1 1244 680 285 110 0 chr6 86487513 86487713 -63029324 - ID_B1 SINE B4 -1 223 2 1 1244 561 221 72 14 chr6 86487807 86487945 -63029092 - B1_Mur3 SINE Alu -3 146 1 1 1244 319 258 167 0 chr6 86487956 86488076 -63028961 - B1F1 SINE Alu -9 140 1 1 1244 601 222 164 0 chr6 86488077 86488248 -63028789 - B3 SINE B2 0 216 18 1 1244 1125 36 0 0 chr6 86488339 86488478 -63028559 - B1_Mus1 SINE Alu 0 148 10 1 1244 748 222 52 38 chr6 86488670 86488881 -63028156 + B3 SINE B2 2 215 -1 1 1244 677 113 75 0 chr6 86489235 86489341 -63027696 - B1_Mus2 SINE Alu 0 147 34 1 1244 372 263 109 8 chr6 86489403 86489522 -63027515 - B1F2 SINE Alu -1 148 18 1 1244 324 0 0 0 chr6 86489667 86489703 -63027334 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1244 407 276 138 61 chr6 86489739 86489923 -63027114 + B4A SINE B4 41 237 -55 1 1244 459 0 0 0 chr6 86489923 86489974 -63027063 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1 1244 491 298 81 0 chr6 86489974 86490098 -63026939 - B1_Mur1 SINE Alu -12 137 4 1 1244 407 276 138 61 chr6 86490098 86490143 -63026894 + B4A SINE B4 238 288 -4 1 1244 245 191 21 0 chr6 86490145 86490192 -63026845 + B3A SINE B2 2 49 -149 1 1244 382 269 171 32 chr6 86490451 86490574 -63026463 - ID_B1 SINE B4 -4 220 81 1 1244 1135 84 0 0 chr6 86490597 86490740 -63026297 - B1_Mus1 SINE Alu -5 143 1 1 1244 246 316 95 62 chr6 86490748 86490927 -63026110 - B3A SINE B2 -3 195 11 1 1244 567 286 27 13 chr6 86490788 86490937 -63026100 - RSINE1 SINE B4 -13 152 2 1 1244 264 330 78 0 chr6 86490939 86491042 -63025995 - PB1D10 SINE Alu -6 111 1 1 1244 202 274 14 0 chr6 86491063 86491136 -63025901 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1244 699 306 75 32 chr6 86491139 86491419 -63025618 - B4A SINE B4 0 292 1 1 1244 637 234 138 56 chr6 86491545 86491739 -63025298 + MTD LTR MaLR 1 210 -209 1 1244 847 113 0 24 chr6 86491739 86491866 -63025171 + B2_Mm2 SINE B2 2 125 -70 1 1244 498 265 205 22 chr6 86491896 86492081 -63024956 + MTD LTR MaLR 196 414 -5 1 1244 226 358 36 9 chr6 86492432 86492542 -63024495 - MIR SINE MIR -145 117 5 1 1244 1271 41 0 0 chr6 86492562 86492709 -63024328 - B1_Mus2 SINE Alu 0 147 1 1 1244 983 55 8 0 chr6 86493042 86493169 -63023868 - B1_Mus1 SINE Alu -1 147 20 1 1244 781 208 34 17 chr6 86493203 86493379 -63023658 - B3A SINE B2 -16 182 4 1 1244 497 291 142 5 chr6 86493415 86493626 -63023411 - MIR SINE MIR -21 241 2 1 1244 237 245 0 36 chr6 86493856 86493911 -63023126 + B3 SINE B2 1 53 -163 1 1244 208 309 60 24 chr6 86493985 86494068 -63022969 + MIR3 SINE MIR 103 188 -20 1 1244 249 338 78 19 chr6 86494368 86494522 -63022515 - MIR SINE MIR -29 233 71 1 1244 487 254 18 0 chr6 86494790 86494900 -63022137 - PB1D10 SINE Alu -2 115 4 1 1244 23 33 0 0 chr6 86495816 86495846 -63021191 + AT_rich Low_complexity Low_complexity 1 30 0 1 1244 651 284 124 36 chr6 86495868 86496063 -63020974 - L1MA6 LINE L1 -34 6266 6043 1 1244 1356 96 11 5 chr6 86496063 86496252 -63020785 - B2_Mm2 SINE B2 -5 190 1 1 1244 651 284 124 36 chr6 86496252 86496476 -63020561 - L1MA6 LINE L1 -258 6042 5810 1 1244 189 0 0 0 chr6 86496480 86496501 -63020536 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1 1244 1216 8 0 0 chr6 86496501 86496635 -63020402 - B1_Mus2 SINE Alu -13 134 1 1 1244 289 241 13 45 chr6 86496724 86496830 -63020207 - ID4 SINE ID -38 114 16 1 1244 254 309 62 21 chr6 86496921 86497017 -63020020 - PB1D10 SINE Alu -15 102 3 1 1244 1102 89 134 0 chr6 86497248 86497405 -63019632 - B2_Mm2 SINE B2 -16 179 2 1 1244 324 278 52 67 chr6 86497473 86497618 -63019419 - MIR SINE MIR -55 153 13 1 1244 442 231 26 57 chr6 86498342 86498450 -63018587 - PB1D10 SINE Alu -204 110 6 1 1244 960 133 0 16 chr6 86498484 86498667 -63018370 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1244 1158 82 0 0 chr6 86498678 86498824 -63018213 - B2_Mm2 SINE B2 -49 146 1 1 1244 629 125 70 18 chr6 86498832 86498946 -63018091 - PB1D9 SINE Alu 0 120 1 1 1244 1470 59 16 5 chr6 86499696 86499882 -63017155 - B2_Mm2 SINE B2 -6 189 2 1 1244 416 216 172 43 chr6 86499883 86499999 -63017038 + B1_Mur2 SINE Alu 12 142 -7 1 1244 250 307 39 10 chr6 86500041 86500143 -63016894 - L1MC LINE L1 -2034 5848 5744 1 1244 350 70 35 0 chr6 86500310 86500367 -63016670 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 2 1244 471 205 0 0 chr6 86500370 86500448 -63016589 - ID4 SINE ID -4 79 2 3 1244 560 221 121 16 chr6 86500751 86500875 -63016162 - B1_Mur1 SINE Alu 0 149 13 4 1244 233 105 53 0 chr6 86501010 86501048 -63015989 + B3 SINE B2 1 40 -176 5 1244 800 164 57 0 chr6 86501241 86501381 -63015656 + B1_Mur4 SINE Alu 3 150 0 6 1244 486 296 80 48 chr6 86501413 86501601 -63015436 + B3A SINE B2 1 194 -4 7 1244 924 201 81 0 chr6 86501987 86502161 -63014876 + B3 SINE B2 27 214 -2 5 1244 780 183 0 96 chr6 86502177 86502334 -63014703 + B1_Mus1 SINE Alu 7 148 0 8 1244 1203 151 16 0 chr6 86502584 86502769 -63014268 - B2_Mm2 SINE B2 -6 189 2 9 1244 751 180 63 21 chr6 86503053 86503195 -63013842 - B1_Mur2 SINE Alu 0 149 2 1 1244 914 241 54 0 chr6 86503199 86503402 -63013635 - B3 SINE B2 -2 214 1 1 1244 279 0 0 0 chr6 86503410 86503441 -63013596 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1244 1142 127 0 34 chr6 86503478 86503657 -63013380 - B2_Mm2 SINE B2 -22 173 1 1 1244 35 0 0 0 chr6 86503657 86503692 -63013345 + AT_rich Low_complexity Low_complexity 1 35 0 1 1244 534 319 19 0 chr6 86503694 86503854 -63013183 - RSINE1 SINE B4 0 165 3 1 1244 635 243 50 7 chr6 86503950 86504091 -63012946 - RSINE1 SINE B4 -17 148 2 1 1244 232 154 346 0 chr6 86504382 86504434 -63012603 + PB1D10 SINE Alu 37 106 -11 1 1244 1328 86 32 0 chr6 86504792 86504979 -63012058 - B2_Mm1t SINE B2 0 193 1 1 1244 686 90 0 0 chr6 86505228 86505317 -63011720 + B1_Mus2 SINE Alu 57 145 -2 1 1244 719 213 135 6 chr6 86505714 86505884 -63011153 + B3A SINE B2 2 193 -5 2 1244 1710 26 0 0 chr6 86506115 86506308 -63010729 + B2_Mm1t SINE B2 1 193 0 2 1244 589 71 20 20 chr6 86506323 86506424 -63010613 + L1_Mus3 LINE L1 6538 6638 0 2 1244 201 74 0 0 chr6 86506615 86506642 -63010395 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1244 283 298 155 0 chr6 86506775 86506859 -63010178 - B1F1 SINE Alu -52 97 1 2 1244 677 229 177 16 chr6 86506985 86507171 -63009866 + B3 SINE B2 1 216 0 2 1244 24 0 0 0 chr6 86507171 86507195 -63009842 + AT_rich Low_complexity Low_complexity 1 24 0 2 1244 1240 93 54 16 chr6 86507273 86507459 -63009578 + B2_Mm1a SINE B2 1 193 0 2 155 963 131 13 33 chr6 86507506 86507656 -63009381 - B1_Mur3 SINE Alu 0 149 3 2 1245 1456 74 21 0 chr6 86507964 86508154 -63008883 - B2_Mm2 SINE B2 0 195 2 2 1245 344 324 63 28 chr6 86508298 86508441 -63008596 - B1F1 SINE Alu -1 148 1 3 1245 1026 246 15 5 chr6 86508441 86508521 -63008516 - ID SINE ID -140 84 3 3 1245 22 35 0 0 chr6 86508521 86508550 -63008487 + AT_rich Low_complexity Low_complexity 1 29 0 3 1245 234 105 0 0 chr6 86508550 86508588 -63008449 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1245 528 307 26 39 chr6 86508590 86508746 -63008291 - RSINE1 SINE B4 -10 155 2 3 1245 431 290 122 0 chr6 86508753 86508884 -63008153 - B1F SINE Alu -2 147 1 3 1245 3867 30 5 0 chr6 86509286 86509720 -63007317 + RLTR10C LTR ERVK 1 436 0 3 1245 386 310 8 8 chr6 86509973 86510090 -63006947 - PB1D10 SINE Alu 0 117 1 3 1245 34 0 0 0 chr6 86510091 86510125 -63006912 + AT_rich Low_complexity Low_complexity 1 34 0 3 1245 524 200 30 0 chr6 86510130 86510230 -63006807 + PB1D9 SINE Alu 5 107 -13 3 1245 1229 85 22 6 chr6 86510231 86510409 -63006628 + B2_Mm2 SINE B2 1 181 -14 4 1245 1004 226 65 0 chr6 86510533 86510763 -63006274 - Lx7 LINE L1 -334 7362 7118 4 1245 570 287 122 5 chr6 86510810 86510999 -63006038 + B3 SINE B2 1 211 -5 4 1245 678 212 66 0 chr6 86511044 86511181 -63005856 + B1F2 SINE Alu 2 147 -2 4 1245 207 0 0 0 chr6 86511695 86511718 -63005319 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1245 1107 50 0 7 chr6 86511718 86511850 -63005187 - B1_Mus1 SINE Alu -8 140 9 4 1245 506 222 24 71 chr6 86511755 86511881 -63005156 - MT2B LTR ERVL -344 257 138 4 1245 191 315 130 16 chr6 86511883 86512067 -63004970 + L2a LINE L2 3214 3418 -8 4 1245 272 274 32 0 chr6 86512237 86512299 -63004738 + PB1D10 SINE Alu 13 76 -41 4 1245 1162 136 11 0 chr6 86512299 86512476 -63004561 + B2_Mm1t SINE B2 1 179 -14 4 1245 340 83 324 27 chr6 86512542 86512653 -63004384 + B2_Mm2 SINE B2 47 190 -5 5 1245 415 208 19 86 chr6 86512647 86512752 -63004285 + MT2B LTR ERVL 155 252 -349 5 1245 926 48 72 0 chr6 86512660 86512785 -63004252 + B1_Mm SINE Alu 6 139 -8 5 1245 207 0 0 0 chr6 86512785 86512808 -63004229 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1245 260 325 13 0 chr6 86512808 86512885 -63004152 + ID_B1 SINE B4 146 223 -1 5 1245 739 222 7 7 chr6 86513219 86513364 -63003673 - B1_Mur1 SINE Alu -2 147 3 5 1245 320 264 57 24 chr6 86513483 86513607 -63003430 + MIR SINE MIR 86 213 -49 5 1245 261 277 157 3 chr6 86513736 86513866 -63003171 - PB1D10 SINE Alu -10 139 1 5 1245 180 0 0 0 chr6 86514240 86514260 -63002777 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1245 392 241 234 0 chr6 86514268 86514413 -63002624 + B3A SINE B2 2 180 -18 5 1245 189 159 0 0 chr6 86514466 86514510 -63002527 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1245 1207 55 0 7 chr6 86514814 86514961 -63002076 + B1_Mm SINE Alu 2 147 0 6 1245 222 245 53 33 chr6 86514969 86515121 -63001916 + (GTGTG)n Simple_repeat Simple_repeat 5 159 0 6 1245 264 261 46 0 chr6 86515248 86515313 -63001724 + ID4 SINE ID 14 81 -2 6 1245 570 242 138 12 chr6 86515706 86515873 -63001164 - B3A SINE B2 -7 191 4 6 1245 524 298 0 0 chr6 86516383 86516504 -63000533 - B3 SINE B2 -65 151 31 6 1245 823 75 0 0 chr6 86516504 86516610 -63000427 + B2_Mm2 SINE B2 2 107 -88 6 1245 524 148 278 0 chr6 86516810 86516925 -63000112 - B1_Mur4 SINE Alu 0 150 4 6 1245 970 198 55 15 chr6 86517323 86517523 -62999514 + B3 SINE B2 9 216 0 6 1245 464 162 12 36 chr6 86517671 86517754 -62999283 - ID4 SINE ID 0 83 3 6 1245 1235 73 78 6 chr6 86517757 86517937 -62999100 - B2_Mm2 SINE B2 -2 193 1 7 1245 2295 113 47 11 chr6 86518289 86518654 -62998383 + RMER10B LTR ERVL 21 398 0 7 1245 219 338 61 12 chr6 86519055 86519194 -62997843 - MIRb SINE MIR -49 159 23 7 1245 420 111 0 0 chr6 86519824 86519887 -62997150 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1245 478 266 0 9 chr6 86519933 86520043 -62996994 - PB1D10 SINE Alu -8 109 1 7 1245 252 320 0 85 chr6 86520079 86520161 -62996876 + ID4_ SINE ID 3 77 -6 7 1245 451 171 9 9 chr6 86520187 86520293 -62996744 + GA-rich Low_complexity Low_complexity 4 109 0 7 1245 1579 72 22 18 chr6 86521831 86522025 -62995012 + MTB_Mm LTR MaLR 1 195 -212 7 1245 1371 71 33 0 chr6 86522025 86522201 -62994836 + B2_Mm2 SINE B2 2 191 -4 7 1245 1199 95 0 11 chr6 86522209 86522390 -62994647 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 7 1245 1383 56 111 5 chr6 86522390 86522579 -62994458 + MTB_Mm LTR MaLR 190 400 0 7 1245 779 225 135 0 chr6 86522694 86522872 -62994165 - B3 SINE B2 -1 215 14 8 1245 1330 111 16 0 chr6 86523060 86523249 -62993788 - B2_Mm1a SINE B2 -1 192 1 8 1245 403 257 24 121 chr6 86523689 86523813 -62993224 - B1F2 SINE Alu -37 112 1 8 1245 323 313 145 0 chr6 86523813 86523841 -62993196 - ID_B1 SINE B4 -129 95 49 8 1245 225 256 0 0 chr6 86524093 86524136 -62992901 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1245 519 315 7 14 chr6 86524151 86524299 -62992738 - RSINE1 SINE B4 -16 149 3 8 1245 485 219 0 8 chr6 86524498 86524618 -62992419 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 8 1245 387 222 65 22 chr6 86524669 86524761 -62992276 + PB1D7 SINE Alu 18 113 -7 8 1245 486 185 141 37 chr6 86524818 86524953 -62992084 + B1F SINE Alu 1 149 0 8 1245 694 161 0 18 chr6 86525016 86525130 -62991907 - B1_Mur1 SINE Alu -1 148 37 8 1245 296 212 14 43 chr6 86525072 86525141 -62991896 - 4.5SRNA scRNA scRNA -5 89 23 9 1245 303 233 120 22 chr6 86525165 86525257 -62991780 + L1M LINE L1 5268 5368 -756 9 1245 1188 82 0 0 chr6 86525851 86525998 -62991039 + B1_Mus1 SINE Alu 2 148 0 9 1245 1113 67 152 0 chr6 86526027 86526192 -62990845 + B2_Mm2 SINE B2 1 190 -5 9 1245 208 88 27 93 chr6 86526274 86526349 -62990688 + (AGCTG)n Simple_repeat Simple_repeat 3 72 0 9 1245 347 308 48 64 chr6 86526358 86526483 -62990554 + RSINE1 SINE B4 41 163 -2 9 1245 451 188 129 0 chr6 86526580 86526681 -62990356 + PB1D10 SINE Alu 3 116 -1 9 1245 239 273 15 29 chr6 86527411 86527479 -62989558 + B4A SINE B4 87 153 -139 9 1245 456 215 108 0 chr6 86527420 86527513 -62989524 + PB1D7 SINE Alu 12 114 -6 9 1245 634 257 0 59 chr6 86528903 86529056 -62987981 - B1F SINE Alu 0 149 6 9 1245 548 242 11 98 chr6 86529056 86529077 -62987960 - ID_B1 SINE B4 0 224 66 1 1245 429 143 35 23 chr6 86529065 86529151 -62987886 + B1_Mur1 SINE Alu 63 149 0 1 1245 198 255 21 11 chr6 86529466 86529561 -62987476 + GA-rich Low_complexity Low_complexity 1 96 0 1 1245 750 138 81 8 chr6 86529664 86529788 -62987249 - B1_Mur2 SINE Alu -6 143 11 1 1245 513 0 0 0 chr6 86529960 86530017 -62987020 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1245 441 177 31 0 chr6 86531004 86531100 -62985937 - RLTR19-int LTR ERVK -2443 3694 3596 1 1245 1452 70 11 0 chr6 86531335 86531520 -62985517 - B2_Mm1t SINE B2 -5 188 2 1 1245 38 22 0 0 chr6 86531827 86531872 -62985165 + AT_rich Low_complexity Low_complexity 1 45 0 1 1245 508 218 71 18 chr6 86531881 86531993 -62985044 - RSINE1 SINE B4 -46 119 2 1 1245 247 160 0 0 chr6 86532046 86532096 -62984941 - B3 SINE B2 0 216 167 1 1245 564 15 0 0 chr6 86532469 86532534 -62984503 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 1 1245 262 62 167 0 chr6 86532539 86532587 -62984450 - Lx LINE L1 -12 6642 6587 1 1245 884 196 0 0 chr6 86532595 86532743 -62984294 - B1_Mur4 SINE Alu -2 148 1 1 1245 843 262 4 8 chr6 86532743 86532926 -62984111 - B3A SINE B2 -18 177 1 1 1245 339 44 0 0 chr6 86532941 86532986 -62984051 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1245 724 192 82 50 chr6 86533559 86533718 -62983319 - RSINE1 SINE B4 0 165 2 1 1245 646 227 54 47 chr6 86533872 86534020 -62983017 - B1_Mur1 SINE Alu 0 149 1 1 1245 243 294 158 83 chr6 86534032 86534273 -62982764 + MLT1K LTR MaLR 219 477 -118 1 1245 1981 163 31 49 chr6 86535774 86536162 -62980875 - RMER10B LTR ERVL -15 383 3 1 1245 766 226 111 80 chr6 86536281 86536670 -62980367 - RMER17C-int LTR ERVK -183 3055 2655 1 1245 288 210 0 0 chr6 86536992 86537054 -62979983 - RLTR19-int LTR ERVK -3111 3026 2965 1 1245 1222 146 42 9 chr6 86537250 86537464 -62979573 + URR1B DNA MER1_type 2 222 -3 1 1245 23 0 0 0 chr6 86538723 86538746 -62978291 + GC_rich Low_complexity Low_complexity 1 23 0 1 1245 265 274 64 107 chr6 86538956 86539079 -62977958 - L1MA10 LINE L1 -11 6323 6210 1 1245 3152 40 0 0 chr6 86539079 86539450 -62977587 + L1Md_T LINE L1 6212 6582 0 1 1245 265 274 64 107 chr6 86539450 86539624 -62977413 - L1MA10 LINE L1 -125 6209 6039 1 1245 469 248 8 58 chr6 86539688 86539808 -62977229 + RSINE1 SINE B4 9 122 -43 1 1245 1230 149 62 18 chr6 86539827 86540052 -62976985 - MTC LTR MaLR 0 421 187 1 1245 2666 146 34 24 chr6 86540068 86540580 -62976457 - RMER4B LTR ERVK -14 452 1 1 1245 449 239 11 0 chr6 86540650 86540742 -62976295 + PB1D10 SINE Alu 23 115 -2 1 1245 244 143 0 60 chr6 86540802 86540869 -62976168 + G-rich Low_complexity Low_complexity 1 63 0 1 1245 747 108 0 0 chr6 86541097 86541208 -62975829 + (TC)n Simple_repeat Simple_repeat 2 112 0 1 1245 459 0 0 0 chr6 86541208 86541259 -62975778 + (TTTTC)n Simple_repeat Simple_repeat 4 54 0 1 1245 329 261 89 24 chr6 86541259 86541430 -62975607 - L1M2 LINE L1 -463 5828 5644 1 1245 1125 58 43 0 chr6 86541476 86541615 -62975422 - B1_Mm SINE Alu -2 145 1 1 1245 821 226 14 99 chr6 86541627 86541838 -62975199 - B3A SINE B2 -5 193 1 1 1245 524 227 93 33 chr6 86541838 86542020 -62975017 - L1M2 LINE L1 -633 5667 5475 1 1245 1286 82 53 0 chr6 86542044 86542215 -62974822 - B2_Mm2 SINE B2 -14 181 2 1 1245 325 300 26 26 chr6 86542379 86542533 -62974504 - L1M2 LINE L1 -730 5441 5288 1 1245 1077 102 0 0 chr6 86542534 86542691 -62974346 + (TTTCC)n Simple_repeat Simple_repeat 4 160 0 1 1245 586 90 50 0 chr6 86542705 86542805 -62974232 + (TTTTC)n Simple_repeat Simple_repeat 3 107 0 1 1245 1162 101 0 0 chr6 86542805 86542953 -62974084 - B1_Mus1 SINE Alu 0 148 1 1 1245 750 166 34 27 chr6 86542961 86543110 -62973927 - B1_Mur4 SINE Alu 0 150 1 1 1245 343 347 103 85 chr6 86543110 86543144 -62973893 - L1M2 LINE L1 -851 5292 5258 1 1245 1019 221 9 27 chr6 86543144 86543363 -62973674 - B3 SINE B2 0 216 2 1 1245 343 347 103 85 chr6 86543363 86543632 -62973405 - L1M2 LINE L1 -886 5257 4994 1 1245 914 256 19 0 chr6 86543632 86543839 -62973198 - B3 SINE B2 -5 211 1 1 1245 343 347 103 85 chr6 86543839 86543863 -62973174 - L1M2 LINE L1 -1150 4993 4974 1 1245 1269 67 0 0 chr6 86543863 86544179 -62972858 + (TG)n Simple_repeat Simple_repeat 1 316 0 1 1245 343 347 103 85 chr6 86544179 86544439 -62972598 - L1M2 LINE L1 -1170 4973 4692 1 1245 237 333 94 0 chr6 86544519 86544615 -62972422 - Charlie1 DNA MER1_type -2676 105 1 1 1245 1466 198 101 12 chr6 86544680 86545007 -62972030 + MTEa LTR MaLR 18 373 -6 1 1245 32 26 0 0 chr6 86546467 86546506 -62970531 + AT_rich Low_complexity Low_complexity 1 39 0 1 1245 346 340 0 10 chr6 86546570 86546671 -62970366 + ID_B1 SINE B4 77 176 -48 1 1245 441 270 0 39 chr6 86546589 86546693 -62970344 + PB1D10 SINE Alu 15 114 -3 1 1245 402 212 35 0 chr6 86546866 86546951 -62970086 - B1_Mm SINE Alu -55 92 5 1 1245 1252 41 0 7 chr6 86547072 86547219 -62969818 - B1_Mm SINE Alu 0 147 2 1 1245 349 324 0 0 chr6 86547310 86547415 -62969622 + RSINE1 SINE B4 2 106 -59 1 1245 631 252 21 0 chr6 86547469 86547612 -62969425 + ID_B1 SINE B4 79 224 0 1 1245 611 128 45 51 chr6 86548092 86548249 -62968788 + Lx9 LINE L1 7488 7643 -1 1 1245 1071 251 14 0 chr6 86548306 86548525 -62968512 + ID_B1 SINE B4 1 222 -2 1 1245 314 321 146 0 chr6 86548768 86548933 -62968104 - MIR SINE MIR -5 257 69 1 1245 555 261 43 31 chr6 86549554 86549716 -62967321 - RSINE1 SINE B4 -1 164 1 1 1245 219 268 0 0 chr6 86549716 86549757 -62967280 - B4A SINE B4 -156 136 96 1 1245 376 188 25 12 chr6 86550486 86550567 -62966470 + ID4_ SINE ID 2 83 0 1 1245 270 143 61 0 chr6 86550751 86550800 -62966237 - RSINE1 SINE B4 -111 54 3 1 1245 246 184 9 0 chr6 86550816 86550917 -62966120 + CT-rich Low_complexity Low_complexity 1 101 0 1 1245 928 149 21 0 chr6 86550917 86551058 -62965979 - B1_Mur2 SINE Alu -5 144 1 1 1245 517 249 98 77 chr6 86551191 86551212 -62965825 - B2_Mm2 SINE B2 -8 187 167 1 1245 342 0 0 0 chr6 86551212 86551250 -62965787 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1245 834 249 98 77 chr6 86551250 86551411 -62965626 - B3A SINE B2 -29 166 1 1 1245 658 276 7 19 chr6 86551991 86552146 -62964891 - ID_B1 SINE B4 0 224 72 1 1245 633 232 13 47 chr6 86552644 86552793 -62964244 + B1_Mur1 SINE Alu 1 144 -5 1 1245 366 23 0 0 chr6 86552820 86552863 -62964174 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1245 1137 128 0 0 chr6 86552863 86553043 -62963994 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1245 267 152 0 0 chr6 86553043 86553089 -62963948 + GA-rich Low_complexity Low_complexity 1 46 0 1 1245 402 121 0 0 chr6 86553359 86553425 -62963612 + (TCTG)n Simple_repeat Simple_repeat 3 68 0 1 1245 437 265 105 55 chr6 86553427 86553468 -62963569 - ID_B1 SINE B4 -13 211 167 1 1245 1428 34 78 6 chr6 86553468 86553486 -62963551 - B2_Mm1a SINE B2 0 193 176 1 1245 387 0 0 0 chr6 86553486 86553529 -62963508 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1245 1428 34 78 6 chr6 86553529 86553690 -62963347 - B2_Mm1a SINE B2 -18 175 2 1 1245 437 265 105 55 chr6 86553690 86553848 -62963189 - ID_B1 SINE B4 -58 166 2 1 1245 1156 62 7 0 chr6 86553874 86554018 -62963019 - B1_Mus2 SINE Alu 0 147 3 1 1245 25 0 0 0 chr6 86554022 86554047 -62962990 + AT_rich Low_complexity Low_complexity 1 25 0 1 1245 186 43 0 0 chr6 86554060 86554083 -62962954 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1245 382 264 104 74 chr6 86554083 86554218 -62962819 - RSINE1 SINE B4 -24 141 3 1 1245 29 0 0 0 chr6 86554222 86554251 -62962786 + AT_rich Low_complexity Low_complexity 1 29 0 1 1245 1270 87 48 11 chr6 86554258 86554445 -62962592 - B2_Mm2 SINE B2 -1 194 1 1 1245 949 245 46 0 chr6 86554452 86554648 -62962389 - B3 SINE B2 -2 214 10 1 1245 456 35 0 0 chr6 86554651 86554709 -62962328 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1245 582 252 17 0 chr6 86554709 86554828 -62962209 - B3A SINE B2 -77 121 1 1 1245 204 294 29 14 chr6 86555055 86555124 -62961913 + MIR SINE MIR 116 185 -77 1 1245 384 297 51 0 chr6 86555824 86555942 -62961095 - ID_B1 SINE B4 -99 125 2 1 1245 462 18 0 0 chr6 86556722 86556777 -62960260 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1245 207 0 0 0 chr6 86556924 86556947 -62960090 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1245 464 284 25 30 chr6 86556955 86557104 -62959933 - ID_B1 SINE B4 -137 155 6 1 1245 432 0 0 0 chr6 86557132 86557180 -62959857 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1245 360 0 0 0 chr6 86557180 86557219 -62959818 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1245 640 260 24 0 chr6 86557220 86557347 -62959690 - RSINE1 SINE B4 -34 131 2 1 1245 345 100 0 0 chr6 86558866 86558916 -62958121 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1245 192 77 0 0 chr6 86559024 86559050 -62957987 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1245 570 254 14 82 chr6 86559052 86559105 -62957932 - RSINE1 SINE B4 -26 139 93 1 1245 687 225 28 28 chr6 86559105 86559247 -62957790 - B1_Mur2 SINE Alu -7 142 1 1 1245 570 254 14 82 chr6 86559247 86559339 -62957698 - RSINE1 SINE B4 -73 92 4 1 1245 427 281 26 0 chr6 86559931 86560045 -62956992 + B1F2 SINE Alu 7 123 -26 1 1245 267 288 288 0 chr6 86560073 86560191 -62956846 + RSINE1 SINE B4 4 155 -10 1 1245 336 48 0 0 chr6 86560195 86560237 -62956800 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 1 1245 300 196 41 52 chr6 86561769 86561866 -62955171 - L1M4 LINE L1 -504 5680 5585 1 1245 324 158 0 0 chr6 86562292 86562349 -62954688 + (CAT)n Simple_repeat Simple_repeat 3 59 0 1 1245 241 398 34 23 chr6 86562443 86562705 -62954332 - L1MD3 LINE L1 -1 7994 7730 1 1245 288 77 0 0 chr6 86562789 86562828 -62954209 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1245 210 71 0 0 chr6 86562841 86562869 -62954168 + (GGCTG)n Simple_repeat Simple_repeat 4 31 0 2 1245 640 300 6 0 chr6 86563019 86563189 -62953848 - ID_B1 SINE B4 -3 221 51 2 1245 200 59 0 29 chr6 86565176 86565211 -62951826 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1245 1034 218 14 14 chr6 86565623 86565842 -62951195 + ID_B1 SINE B4 6 224 0 2 1245 784 242 108 21 chr6 86566403 86566597 -62950440 + B3 SINE B2 5 215 -1 2 1245 22 0 0 0 chr6 86567562 86567584 -62949453 + AT_rich Low_complexity Low_complexity 1 22 0 2 1245 954 191 17 6 chr6 86567584 86567758 -62949279 - B3 SINE B2 -40 176 1 2 1245 455 271 16 24 chr6 86568694 86568819 -62948218 + ID_B1 SINE B4 93 216 -8 2 1245 346 224 127 27 chr6 86568852 86568962 -62948075 + B4A SINE B4 5 125 -167 2 1245 205 51 25 25 chr6 86568962 86569002 -62948035 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1245 1210 28 0 14 chr6 86569006 86569150 -62947887 - B1_Mm SINE Alu -5 142 1 2 1245 307 239 45 0 chr6 86569194 86569261 -62947776 + RSINE1 SINE B4 53 122 -43 2 1245 242 216 125 0 chr6 86569299 86569365 -62947672 + B1F SINE Alu 33 105 -44 2 1245 378 0 0 0 chr6 86569422 86569464 -62947573 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1245 453 103 0 0 chr6 86570621 86570689 -62946348 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1245 224 236 18 18 chr6 86572138 86572194 -62944843 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1245 886 269 14 0 chr6 86573589 86573797 -62943240 - ID_B1 SINE B4 -13 211 1 2 1245 418 200 78 29 chr6 86574994 86575097 -62941940 + B1F SINE Alu 41 148 -1 2 1245 218 181 48 167 chr6 86575097 86575119 -62941918 + B2_Mm2 SINE B2 81 190 -5 2 1245 431 182 13 4 chr6 86577356 86577448 -62939589 + PB1D10 SINE Alu 42 149 0 2 1245 311 224 29 33 chr6 86577448 86577694 -62939343 + (TAGA)n Simple_repeat Simple_repeat 1 244 0 2 1245 368 273 0 13 chr6 86580427 86580505 -62936532 - ID4 SINE ID 0 83 7 2 1245 324 334 56 8 chr6 86580531 86580666 -62936371 - B1F SINE Alu -8 139 1 2 1245 610 303 35 15 chr6 86581550 86581629 -62935408 + ID SINE ID 3 85 -139 2 1245 324 259 60 67 chr6 86581629 86581778 -62935259 + B1F2 SINE Alu 1 148 -1 2 1245 186 71 0 0 chr6 86582311 86582339 -62934698 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1245 253 103 0 0 chr6 86582396 86582435 -62934602 - L1MC4 LINE L1 -6 8036 7998 2 1245 464 242 11 0 chr6 86582737 86582832 -62934205 - RSINE1 SINE B4 -62 103 8 2 1245 329 256 149 21 chr6 86582835 86583020 -62934017 - B4A SINE B4 -62 230 16 2 1245 1485 263 109 14 chr6 86583041 86583527 -62933510 + RMER5 LTR ERV1 1 532 -2 2 1245 536 290 132 7 chr6 86583560 86583848 -62933189 - L1MC4 LINE L1 -462 7580 7257 2 1245 261 324 28 9 chr6 86584039 86584145 -62932892 - L1MC4 LINE L1 -1028 7014 6907 2 1245 278 214 94 11 chr6 86584151 86584242 -62932795 + PB1D10 SINE Alu 10 104 -13 2 1245 2163 110 55 3 chr6 86584336 86584647 -62932390 - ORR1A2 LTR MaLR 0 327 1 2 1245 1068 236 14 14 chr6 86584923 86585142 -62931895 + ID_B1 SINE B4 5 223 -1 2 1245 230 305 192 28 chr6 86585148 86585330 -62931707 - L1MC4 LINE L1 -1000 6882 6671 2 1245 802 160 0 0 chr6 86585376 86585507 -62931530 + B1_Mus2 SINE Alu 17 147 0 2 1245 1138 206 14 0 chr6 86585507 86585726 -62931311 - Lx5 LINE L1 -286 6764 6543 2 1245 1656 144 56 0 chr6 86585726 86586010 -62931027 + Lx5 LINE L1 6751 7050 0 2 1245 607 308 60 0 chr6 86586041 86586226 -62930811 - B3A SINE B2 -2 196 1 2 1245 450 0 0 0 chr6 86587873 86587923 -62929114 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1245 336 265 167 58 chr6 86588345 86588501 -62928536 + L1M5 LINE L1 3050 3222 -2924 2 1245 433 231 11 0 chr6 86588501 86588592 -62928445 + PB1D7 SINE Alu 29 120 0 2 1245 463 195 112 26 chr6 86588707 86588823 -62928214 - B1F SINE Alu 0 149 24 2 1245 523 189 16 0 chr6 86588852 86588979 -62928058 + CT-rich Low_complexity Low_complexity 4 132 0 2 1245 1071 137 0 0 chr6 86588986 86589161 -62927876 + (TCCC)n Simple_repeat Simple_repeat 3 177 0 2 1245 312 219 48 12 chr6 86589661 86589744 -62927293 - B1F SINE Alu -62 87 2 2 1245 723 117 32 0 chr6 86590505 86590754 -62926283 + (TCTG)n Simple_repeat Simple_repeat 1 256 0 2 1245 538 278 58 43 chr6 86590837 86591044 -62925993 + B4A SINE B4 9 218 -74 2 1245 254 231 45 30 chr6 86591159 86591226 -62925811 + B4A SINE B4 225 292 0 2 1245 579 244 14 4 chr6 86591441 86591583 -62925454 - ID_B1 SINE B4 -67 225 77 2 1245 433 226 89 65 chr6 86592050 86592173 -62924864 + B1_Mur2 SINE Alu 17 142 -7 2 1245 45 40 0 13 chr6 86592175 86592197 -62924840 + AT_rich Low_complexity Low_complexity 1 22 0 2 1245 991 88 80 0 chr6 86592197 86592334 -62924703 + B1_Mus1 SINE Alu 1 148 0 2 1245 45 40 0 13 chr6 86592334 86592388 -62924649 + AT_rich Low_complexity Low_complexity 1 54 0 2 1245 549 80 0 0 chr6 86593161 86593236 -62923801 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1245 365 212 24 36 chr6 86593303 86593386 -62923651 + ID4_ SINE ID 2 83 0 2 1245 225 269 0 56 chr6 86595155 86595226 -62921811 - RLTR13B4 LTR ERVK -701 102 36 2 1245 307 300 12 0 chr6 86595404 86595484 -62921553 + ID4_ SINE ID 3 83 0 2 1245 452 278 41 94 chr6 86595741 86595912 -62921125 + RSINE1 SINE B4 4 165 0 2 1245 601 145 176 17 chr6 86595935 86596054 -62920983 - B1_Mur2 SINE Alu -9 140 3 2 1245 336 316 90 56 chr6 86596405 86596486 -62920551 + B1F SINE Alu 1 79 -70 2 1245 871 225 55 5 chr6 86596486 86596536 -62920501 - B3 SINE B2 -4 212 154 2 1245 297 0 0 0 chr6 86596536 86596569 -62920468 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1245 871 225 55 5 chr6 86596569 86596719 -62920318 - B3 SINE B2 -63 153 3 2 1245 336 316 90 56 chr6 86596719 86596781 -62920256 + B1F SINE Alu 80 149 0 2 1245 468 165 26 0 chr6 86596781 86596896 -62920141 + GA-rich Low_complexity Low_complexity 2 119 0 2 1245 27 0 0 0 chr6 86599036 86599063 -62917974 + AT_rich Low_complexity Low_complexity 1 27 0 2 1245 380 273 115 8 chr6 86601243 86601365 -62915672 - RSINE1 SINE B4 -29 136 2 2 1245 233 341 121 38 chr6 86602281 86602546 -62914491 - L2b LINE L2 -57 3318 3032 2 1245 780 11 0 0 chr6 86602703 86602792 -62914245 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 1245 259 313 43 0 chr6 86603594 86603709 -62913328 + L1MC LINE L1 5718 5837 -2045 2 1245 181 274 129 0 chr6 86604360 86604422 -62912615 + L2c LINE L2 3277 3346 -41 2 1245 579 230 178 0 chr6 86604795 86604947 -62912090 + B3A SINE B2 2 180 -18 2 1245 504 0 0 0 chr6 86605453 86605509 -62911528 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 2 1245 247 276 194 0 chr6 86605571 86605669 -62911368 + MIR SINE MIR 64 180 -82 2 1245 289 339 79 4 chr6 86606143 86606371 -62910666 + L1MD LINE L1 4414 4658 -1488 2 1245 311 216 115 49 chr6 86609358 86609480 -62907557 - RLTR25B LTR ERVK -457 571 442 2 1245 458 162 0 0 chr6 86609414 86609488 -62907549 - B1_Mus1 SINE Alu -41 107 34 2 1245 467 283 16 8 chr6 86609482 86609603 -62907434 + B1F SINE Alu 27 148 -1 2 1245 1027 212 19 19 chr6 86609631 86609842 -62907195 + B3 SINE B2 1 211 -5 2 1245 667 214 67 36 chr6 86610292 86610457 -62906580 + ID_B1 SINE B4 55 224 0 2 1245 474 18 0 0 chr6 86611103 86611158 -62905879 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1245 368 270 78 28 chr6 86611820 86611961 -62905076 + MER5B DNA MER1_type 4 151 -27 2 1245 766 208 35 0 chr6 86612027 86612171 -62904866 + B1_Mur4 SINE Alu 2 150 0 2 1245 205 250 21 0 chr6 86612473 86612521 -62904516 - MER5B DNA MER1_type -128 50 2 2 1245 780 167 32 0 chr6 86613224 86613350 -62903687 + B1_Mur2 SINE Alu 20 149 0 2 1245 281 140 18 0 chr6 86613379 86613436 -62903601 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1245 500 271 125 6 chr6 86613450 86613610 -62903427 - B4A SINE B4 -113 179 1 2 1245 1053 206 4 49 chr6 86613756 86613981 -62903056 + B3 SINE B2 2 216 0 2 1245 787 233 6 6 chr6 86614930 86615094 -62901943 + RSINE1 SINE B4 2 165 0 2 1245 225 0 0 0 chr6 86615337 86615362 -62901675 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1245 307 281 36 12 chr6 86616093 86616176 -62900861 + PB1 SINE Alu 27 111 -16 2 1245 323 270 27 0 chr6 86616186 86616260 -62900777 - ID4_ SINE ID 0 83 8 2 1245 873 169 7 7 chr6 86617673 86617822 -62899215 - B1_Mur1 SINE Alu 0 149 1 2 1245 24 85 0 0 chr6 86618865 86618924 -62898113 + GC_rich Low_complexity Low_complexity 1 59 0 2 1245 24 0 0 0 chr6 86619149 86619173 -62897864 + GC_rich Low_complexity Low_complexity 1 24 0 2 1245 32 0 0 0 chr6 86619209 86619241 -62897796 + GC_rich Low_complexity Low_complexity 1 32 0 2 1245 221 233 68 12 chr6 86620081 86620161 -62896876 - MIRb SINE MIR -82 186 94 2 1245 183 80 0 0 chr6 86620247 86620272 -62896765 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1245 233 304 95 73 chr6 86620321 86620594 -62896443 + Kanga2_a DNA Tc2 470 748 -140 2 1245 224 209 28 69 chr6 86621859 86621931 -62895106 + PB1D10 SINE Alu 1 69 -48 2 1245 788 228 25 73 chr6 86621948 86622152 -62894885 + B3A SINE B2 2 195 -3 2 1245 325 171 22 109 chr6 86622542 86622634 -62894403 + PB1D9 SINE Alu 35 118 -2 2 1245 479 216 266 21 chr6 86622813 86623050 -62893987 + L1MB7 LINE L1 5875 6169 -15 2 1245 193 289 137 23 chr6 86623291 86623422 -62893615 - L2 LINE L2 -625 2794 2649 2 1245 254 188 156 0 chr6 86623816 86623880 -62893157 + L1MA9 LINE L1 5865 5938 -374 3 1245 1087 70 21 0 chr6 86624540 86624683 -62892354 + B1_Mus2 SINE Alu 1 146 -1 3 1245 294 257 29 38 chr6 86625008 86625113 -62891924 + ID_B1 SINE B4 73 176 -48 3 1245 413 225 31 62 chr6 86625022 86625150 -62891887 + PB1D10 SINE Alu 6 128 -21 3 1245 23 0 0 0 chr6 86625444 86625467 -62891570 + AT_rich Low_complexity Low_complexity 1 23 0 3 1245 470 231 19 19 chr6 86625692 86625798 -62891239 + PB1D10 SINE Alu 7 112 -5 3 1245 288 267 14 24 chr6 86626059 86626163 -62890874 + B1F2 SINE Alu 1 102 -15 3 1245 1196 91 102 6 chr6 86626523 86626700 -62890337 - B2_Mm2 SINE B2 0 195 2 3 1245 318 333 120 8 chr6 86627237 86627370 -62889667 - ID_B1 SINE B4 -9 215 68 3 1245 189 0 0 0 chr6 86627660 86627681 -62889356 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1245 264 247 13 52 chr6 86627684 86627761 -62889276 - B4A SINE B4 -8 284 211 3 1245 362 315 108 65 chr6 86627804 86628035 -62889002 - B4A SINE B4 -51 241 1 3 1245 233 266 15 15 chr6 86628788 86628853 -62888184 + PB1D10 SINE Alu 1 65 -52 3 1245 873 256 125 82 chr6 86628944 86629090 -62887947 + L1M2 LINE L1 5326 5479 -818 3 1245 786 254 24 5 chr6 86629090 86629296 -62887741 + B3 SINE B2 3 212 -4 3 1245 873 256 125 82 chr6 86629296 86629612 -62887425 + L1M2 LINE L1 5480 5808 -489 3 1245 304 218 20 139 chr6 86629612 86629713 -62887324 + MT2B LTR ERVL 149 237 -364 3 1245 800 180 0 41 chr6 86629635 86629780 -62887257 + B1_Mur4 SINE Alu 6 144 -6 3 1245 207 0 0 0 chr6 86629783 86629806 -62887231 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 3 1245 451 322 16 0 chr6 86630237 86630358 -62886679 + ID_B1 SINE B4 102 224 0 3 1245 299 130 19 0 chr6 86630360 86630414 -62886623 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 3 1245 966 144 0 7 chr6 86631373 86631520 -62885517 - B1_Mus1 SINE Alu -2 146 1 3 1245 224 185 18 18 chr6 86631597 86631652 -62885385 + CT-rich Low_complexity Low_complexity 1 55 0 3 1245 252 282 14 0 chr6 86631967 86632038 -62884999 + B3A SINE B2 8 79 -119 3 1245 349 239 151 17 chr6 86632131 86632250 -62884787 + RSINE1 SINE B4 3 137 -28 3 1245 180 0 0 0 chr6 86632287 86632307 -62884730 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1245 417 267 72 15 chr6 86632452 86632630 -62884407 + B3 SINE B2 2 188 -7 3 1245 423 175 113 28 chr6 86633101 86633207 -62883830 + B1_Mur3 SINE Alu 34 148 -1 3 1245 1162 64 0 0 chr6 86633208 86633349 -62883688 + B1_Mus1 SINE Alu 2 142 -6 3 1245 180 0 0 0 chr6 86633352 86633372 -62883665 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1245 360 312 21 0 chr6 86633389 86633485 -62883552 + PB1D10 SINE Alu 7 104 -13 3 1245 946 127 28 0 chr6 86634837 86634979 -62882058 - B1_Mus2 SINE Alu 0 147 2 3 1245 307 90 25 37 chr6 86636302 86636383 -62880654 + (CA)n Simple_repeat Simple_repeat 2 81 0 3 1245 474 33 0 0 chr6 86636383 86636443 -62880594 + (CCTA)n Simple_repeat Simple_repeat 2 61 0 3 1245 416 299 22 7 chr6 86636703 86636841 -62880196 + B1_Mur1 SINE Alu 1 140 -9 3 1245 402 21 0 0 chr6 86636914 86636961 -62880076 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1245 585 0 0 0 chr6 86636962 86637027 -62880010 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1245 511 295 106 29 chr6 86637461 86637715 -62879322 + MLT1D LTR MaLR 222 504 -1 3 1245 360 213 140 30 chr6 86638019 86638187 -62878850 - MLT1A LTR MaLR -2 372 225 3 1245 373 237 68 103 chr6 86638284 86638430 -62878607 - B1F SINE Alu -1 148 8 3 155 1091 286 23 42 chr6 86638550 86638936 -62878101 - MTE2b LTR MaLR 0 379 1 3 1246 353 227 80 30 chr6 86638958 86639058 -62877979 - MER74B LTR ERVL -259 363 259 3 1246 625 253 120 6 chr6 86639085 86639260 -62877777 + B3 SINE B2 2 196 -20 3 1246 326 205 29 154 chr6 86640061 86640165 -62876872 + PB1D7 SINE Alu 25 115 -5 3 1246 1266 101 32 5 chr6 86640322 86640512 -62876525 + B2_Mm2 SINE B2 1 195 0 3 1246 483 242 0 0 chr6 86640854 86640949 -62876088 - PB1D10 SINE Alu -8 109 15 3 1246 853 141 82 0 chr6 86641566 86641701 -62875336 + B1_Mur4 SINE Alu 1 146 -4 3 1246 849 141 22 0 chr6 86643893 86644028 -62873009 - B1_Mus1 SINE Alu -1 147 10 3 1246 237 229 0 116 chr6 86644989 86645058 -62871979 + B1_Mur2 SINE Alu 89 149 0 3 1246 520 273 8 0 chr6 86645333 86645454 -62871583 - B3A SINE B2 -76 122 1 3 1246 273 289 60 0 chr6 86645558 86645641 -62871396 + B1F1 SINE Alu 2 89 -60 3 1246 21 36 0 0 chr6 86647534 86647562 -62869475 + AT_rich Low_complexity Low_complexity 1 28 0 3 1246 312 266 33 92 chr6 86647695 86647815 -62869222 - B1F1 SINE Alu -28 121 9 3 1246 796 92 74 16 chr6 86647917 86648039 -62868998 + B1_Mus1 SINE Alu 19 147 -1 3 1246 574 332 108 9 chr6 86648351 86648786 -62868251 - L1M3 LINE L1 -359 5824 5347 3 1246 759 244 172 0 chr6 86648798 86649049 -62867988 - B4A SINE B4 -3 289 2 3 1246 1183 90 83 17 chr6 86649190 86649370 -62867667 - B2_Mm2 SINE B2 -3 192 1 3 1246 762 240 54 27 chr6 86649418 86649602 -62867435 - B3 SINE B2 -27 189 1 3 1246 303 300 18 18 chr6 86649816 86649928 -62867109 - L1M3 LINE L1 -1021 5119 5008 3 1246 573 198 29 17 chr6 86649945 86650082 -62866955 - B1_Mur2 SINE Alu -2 147 2 3 1246 322 344 143 30 chr6 86651253 86651553 -62865484 - L2 LINE L2 -350 3069 2736 3 1246 916 110 7 0 chr6 86652388 86652524 -62864513 + B1_Mus2 SINE Alu 10 146 -1 3 1246 2087 188 9 38 chr6 86652815 86653241 -62863796 + MTC LTR MaLR 5 418 -3 3 1246 224 273 62 38 chr6 86654706 86654786 -62862251 + BC1_Mm scRNA scRNA 9 90 -62 3 1246 314 280 30 10 chr6 86654991 86655092 -62861945 - PB1D7 SINE Alu -17 103 1 3 1246 186 43 0 0 chr6 86656240 86656263 -62860774 + (TCTG)n Simple_repeat Simple_repeat 3 25 0 3 1246 649 154 197 0 chr6 86656283 86656400 -62860637 - B1_Mur4 SINE Alu -10 140 1 3 1246 184 30 0 57 chr6 86656418 86656453 -62860584 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 3 1246 195 42 0 0 chr6 86656571 86656595 -62860442 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1246 1260 40 0 0 chr6 86656995 86657143 -62859894 - B1_Mus1 SINE Alu 0 148 1 3 1246 1210 54 0 13 chr6 86657522 86657671 -62859366 - B1_Mus1 SINE Alu 0 148 2 3 1246 520 137 52 113 chr6 86657914 86658029 -62859008 - B1_Mur3 SINE Alu -5 144 37 3 1246 275 205 150 25 chr6 86657967 86658047 -62858990 - MT2B LTR ERVL -344 257 168 3 1246 191 36 36 0 chr6 86658791 86658819 -62858218 + (CAAAC)n Simple_repeat Simple_repeat 5 33 0 3 1246 216 0 0 0 chr6 86659251 86659275 -62857762 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1246 21 0 0 0 chr6 86659291 86659312 -62857725 + AT_rich Low_complexity Low_complexity 1 21 0 3 1246 637 228 53 48 chr6 86659446 86659635 -62857402 + B3A SINE B2 1 190 -8 3 1246 255 306 44 0 chr6 86659751 86659832 -62857205 - ID4 SINE ID -54 98 15 3 1246 507 211 0 92 chr6 86661055 86661175 -62855862 - B3A SINE B2 -89 109 1 3 1246 249 139 0 0 chr6 86661506 86661549 -62855488 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1246 527 205 163 8 chr6 86661761 86661884 -62855153 - ID_B1 SINE B4 -3 221 80 3 1246 868 202 166 0 chr6 86661889 86662082 -62854955 + URR1B DNA MER1_type 1 225 0 3 1246 308 278 0 14 chr6 86662090 86662163 -62854874 - ID4_ SINE ID -9 74 3 3 1246 824 161 29 17 chr6 86662217 86662387 -62854650 - B3 SINE B2 -11 182 2 3 1246 207 331 35 34 chr6 86662676 86662783 -62854254 + MIRb SINE MIR 86 193 -75 3 1246 254 258 134 0 chr6 86663204 86663301 -62853736 + PB1D7 SINE Alu 2 111 -9 3 1246 225 0 0 0 chr6 86663301 86663326 -62853711 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1246 1663 203 41 11 chr6 86663340 86663703 -62853334 + ORR1D1 LTR MaLR 1 374 0 3 1246 415 286 50 60 chr6 86663831 86664013 -62853024 + Tigger5 DNA MER2_type 2157 2336 -70 3 1246 425 66 16 0 chr6 86664343 86664404 -62852633 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 1246 463 316 52 0 chr6 86664411 86664566 -62852471 - RSINE1 SINE B4 0 165 3 3 1246 1448 70 5 5 chr6 86664955 86665142 -62851895 - B2_Mm1a SINE B2 -5 188 2 3 1246 280 351 68 15 chr6 86665176 86665309 -62851728 - PB1D10 SINE Alu -7 141 2 3 1246 588 186 88 15 chr6 86665362 86665498 -62851539 + B1_Mur2 SINE Alu 1 146 -3 3 1246 762 200 0 15 chr6 86665747 86665879 -62851158 + B1_Mur4 SINE Alu 21 150 0 3 1246 408 136 0 0 chr6 86666167 86666255 -62850782 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 1246 433 295 23 15 chr6 86666266 86666397 -62850640 - RSINE1 SINE B4 -31 134 3 3 1246 811 182 147 6 chr6 86666414 86666591 -62850446 + B3 SINE B2 1 202 -14 3 1246 352 55 0 35 chr6 86666880 86666937 -62850100 + (TCC)n Simple_repeat Simple_repeat 3 57 0 3 1246 1712 26 0 0 chr6 86666939 86667132 -62849905 - B2_Mm1a SINE B2 0 193 1 3 1246 680 200 64 0 chr6 86667137 86667277 -62849760 - B1_Mur2 SINE Alu 0 149 1 3 1246 681 13 0 0 chr6 86668196 86668274 -62848763 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 3 1246 23 33 0 0 chr6 86668619 86668649 -62848388 + AT_rich Low_complexity Low_complexity 1 30 0 3 1246 3351 202 102 1 chr6 86668670 86669340 -62847697 + RMER1B Other Other 8 1062 -4 4 1246 638 194 97 0 chr6 86670071 86670205 -62846832 - B1_Mur1 SINE Alu 0 149 3 4 1246 668 290 12 6 chr6 86670219 86670382 -62846655 - RSINE1 SINE B4 0 165 2 4 1246 1274 41 0 0 chr6 86670865 86671012 -62846025 - B1_Mus1 SINE Alu 0 148 2 4 1246 252 311 46 19 chr6 86671751 86671766 -62845271 - ID_B1 SINE B4 -27 197 87 4 1246 409 237 11 0 chr6 86671766 86671859 -62845178 - B1F1 SINE Alu -50 99 6 4 1246 4383 160 83 24 chr6 86673395 86673644 -62843393 - RMER19B LTR ERVK -5 897 607 4 1246 192 77 0 0 chr6 86673644 86673670 -62843367 + (CAG)n Simple_repeat Simple_repeat 1 26 0 4 1246 4383 189 84 33 chr6 86673670 86674380 -62842657 - RMER19B LTR ERVK -296 606 1 4 1246 511 318 121 0 chr6 86674415 86674613 -62842424 - MER2 DNA MER2_type -123 222 1 4 1246 750 223 29 0 chr6 86674907 86675082 -62841955 + B3A SINE B2 1 180 -18 4 1246 28 29 0 0 chr6 86675116 86675151 -62841886 + AT_rich Low_complexity Low_complexity 1 35 0 4 1246 481 278 56 68 chr6 86675312 86675474 -62841563 + RSINE1 SINE B4 4 163 -2 4 1246 396 204 14 14 chr6 86676609 86676691 -62840346 + ID4_ SINE ID 12 93 -59 4 1246 613 291 6 25 chr6 86677008 86677170 -62839867 + ID_B1 SINE B4 66 224 0 4 1246 1052 257 83 108 chr6 86677390 86677752 -62839285 + MTE2a LTR MaLR 19 371 -8 4 1246 510 299 24 0 chr6 86677749 86677876 -62839161 + ID_B1 SINE B4 81 210 -14 4 1246 270 0 0 0 chr6 86678005 86678035 -62839002 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1246 520 194 9 46 chr6 86678047 86678155 -62838882 - MT2A LTR ERVL -72 461 358 4 1246 344 197 30 15 chr6 86678148 86678215 -62838822 - MT2A LTR ERVL -380 153 86 4 1246 400 292 80 70 chr6 86678220 86678361 -62838676 - MT2A LTR ERVL -467 134 7 4 1246 366 301 74 15 chr6 86678358 86678493 -62838544 - MTD LTR MaLR -275 144 2 4 1246 385 336 55 35 chr6 86678876 86679021 -62838016 + RSINE1 SINE B4 16 163 -2 4 1246 1634 191 33 23 chr6 86679066 86679457 -62837580 + Lx9 LINE L1 7081 7475 -169 4 1246 369 168 79 9 chr6 86679476 86679590 -62837447 + Lx9 LINE L1 7523 7644 0 4 1246 485 196 9 47 chr6 86680017 86680124 -62836913 + PB1D9 SINE Alu 2 104 -16 4 1246 546 269 46 8 chr6 86680141 86680272 -62836765 + RSINE1 SINE B4 8 143 -22 4 1246 440 245 50 20 chr6 86680355 86680455 -62836582 - PB1D10 SINE Alu -45 104 2 4 1246 253 212 21 124 chr6 86680374 86680471 -62836566 - MT2B2 LTR ERVL -343 241 155 4 1246 505 178 53 30 chr6 86680602 86680735 -62836302 + L1MEc LINE L1 2306 2441 -3959 4 1246 528 276 107 59 chr6 86680736 86681006 -62836031 + B4A SINE B4 2 284 -8 4 1246 618 203 44 15 chr6 86681311 86681483 -62835554 + B3A SINE B2 1 184 -11 4 1246 180 0 0 0 chr6 86681485 86681505 -62835532 + (G)n Simple_repeat Simple_repeat 1 20 0 4 1246 305 274 28 47 chr6 86681578 86681685 -62835352 - B1_Mm SINE Alu -16 131 27 4 1246 270 0 0 0 chr6 86681923 86681953 -62835084 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1246 1186 61 0 0 chr6 86681953 86682100 -62834937 - B1_Mus2 SINE Alu 0 147 1 4 1246 627 251 71 38 chr6 86683785 86683996 -62833041 - ID_B1 SINE B4 -5 219 2 4 1246 348 281 9 17 chr6 86684019 86684135 -62832902 - PB1D9 SINE Alu -5 115 1 4 1246 980 42 0 0 chr6 86684869 86684988 -62832049 + B1_Mus2 SINE Alu 29 147 0 4 1246 300 302 155 86 chr6 86685331 86685563 -62831474 + LTR78 LTR ERV1 970 1217 -87 4 1246 629 228 18 0 chr6 86686067 86686181 -62830856 - RSINE1 SINE B4 -39 126 11 4 1246 204 67 0 0 chr6 86686193 86686223 -62830814 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1246 828 277 29 21 chr6 86686294 86686534 -62830503 - B4A SINE B4 -46 246 5 4 1246 485 215 18 27 chr6 86686537 86686647 -62830390 - ID_B1 SINE B4 0 224 116 4 1246 254 357 11 117 chr6 86686549 86686822 -62830215 + YREP_Mm Unknown Unknown 186 429 -1383 4 1246 444 319 106 0 chr6 86687963 86688104 -62828933 + B3A SINE B2 2 157 -41 4 1246 197 0 0 67 chr6 86688113 86688143 -62828894 + (CATATA)n Simple_repeat Simple_repeat 6 33 0 4 1246 284 214 81 35 chr6 86688167 86688254 -62828783 - L1ME4a LINE L1 -74 6050 5960 4 1246 239 266 20 113 chr6 86688297 86688407 -62828630 - ID2 SINE ID -51 101 3 4 1246 1852 65 65 8 chr6 86688421 86688667 -62828370 - L1Md_F2 LINE L1 -12 6570 6311 4 1246 311 301 64 25 chr6 86688725 86688929 -62828108 - L1ME4a LINE L1 -362 5762 5551 4 1246 2131 157 96 10 chr6 86689283 86689669 -62827368 - MTD LTR MaLR 0 419 1 4 1246 231 231 39 0 chr6 86689717 86689730 -62827307 + RLTR22_Mur LTR ERVK 1303 1356 -492 4 1246 738 279 92 64 chr6 86689730 86689769 -62827268 - B4A SINE B4 0 292 251 4 1246 189 0 0 0 chr6 86689769 86689790 -62827247 + (CGTG)n Simple_repeat Simple_repeat 1 21 0 4 1246 207 0 0 0 chr6 86689790 86689812 -62827225 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 1246 738 279 92 64 chr6 86689812 86690054 -62826983 - B4A SINE B4 -42 250 3 4 1246 1553 208 64 0 chr6 86690729 86691056 -62825981 + ORR1E LTR MaLR 10 357 -2 4 1246 874 228 14 84 chr6 86691278 86691496 -62825541 - B3 SINE B2 0 216 3 4 1246 418 209 27 5 chr6 86692284 86692375 -62824662 - PB1D7 SINE Alu -11 109 19 4 1246 490 280 76 0 chr6 86692568 86692700 -62824337 + ID_B1 SINE B4 83 224 0 4 1246 183 339 0 0 chr6 86692922 86692987 -62824050 + MIR SINE MIR 173 237 -25 4 1246 1107 178 13 71 chr6 86693557 86693781 -62823256 + B3 SINE B2 1 211 -5 4 1246 618 211 0 34 chr6 86693911 86694029 -62823008 - ID_B1 SINE B4 -13 211 98 4 1246 384 327 6 39 chr6 86694072 86694182 -62822855 + B1F SINE Alu 1 105 -44 4 1246 1026 205 21 5 chr6 86694182 86694373 -62822664 + B3 SINE B2 1 194 -22 4 1246 337 273 23 0 chr6 86694384 86694472 -62822565 + PB1 SINE Alu 3 92 -35 4 1246 596 261 7 29 chr6 86694756 86694894 -62822143 + RSINE1 SINE B4 31 165 0 4 1246 318 27 0 0 chr6 86694898 86694935 -62822102 + HAL1-3A_ME LINE L1 1975 2011 -847 4 1246 200 114 0 64 chr6 86694950 86694997 -62822040 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 4 1246 1292 63 6 0 chr6 86695033 86695208 -62821829 + (TCC)n Simple_repeat Simple_repeat 3 178 0 4 1246 231 36 0 0 chr6 86695221 86695249 -62821788 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 1246 326 280 139 9 chr6 86695442 86695550 -62821487 + ID_B1 SINE B4 87 208 -16 4 1246 746 229 0 7 chr6 86695948 86696089 -62820948 + B1F2 SINE Alu 2 141 -8 4 1246 986 277 11 15 chr6 86696263 86696527 -62820510 - B4A SINE B4 -22 270 8 4 1246 243 122 0 0 chr6 86696537 86696586 -62820451 + (TTA)n Simple_repeat Simple_repeat 1 49 0 4 1246 1658 26 5 0 chr6 86696920 86697111 -62819926 + B2_Mm1a SINE B2 2 193 0 4 1246 991 128 7 0 chr6 86697125 86697273 -62819764 + B1_Mur4 SINE Alu 2 150 0 4 1246 1064 225 0 32 chr6 86698323 86698539 -62818498 + B3 SINE B2 2 210 -6 4 1246 293 235 48 19 chr6 86699039 86699086 -62817951 - RMER17A LTR ERVK -287 464 415 4 1246 333 0 0 0 chr6 86699086 86699123 -62817914 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1246 293 235 48 19 chr6 86699123 86699179 -62817858 - RMER17A LTR ERVK -337 414 359 4 1246 278 292 14 27 chr6 86699212 86699286 -62817751 + Tigger5 DNA MER2_type 161 233 -2173 4 1246 310 175 16 16 chr6 86699366 86699430 -62817607 - HAL1-3A_ME LINE L1 -819 2039 1976 4 1246 361 268 90 34 chr6 86699719 86699751 -62817286 + MIRb SINE MIR 43 80 -188 4 1246 1951 203 51 32 chr6 86699751 86700163 -62816874 + MTC LTR MaLR 2 421 0 4 1246 361 267 89 31 chr6 86700163 86700270 -62816767 + MIRb SINE MIR 75 194 -74 4 1246 1501 58 16 0 chr6 86700270 86700458 -62816579 + B2_Mm2 SINE B2 2 192 -3 4 1246 304 277 99 81 chr6 86700458 86700478 -62816559 + MIR3 SINE MIR 189 206 -2 4 1246 270 0 0 0 chr6 86700749 86700779 -62816258 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1246 396 0 0 0 chr6 86700779 86700822 -62816215 + (GA)n Simple_repeat Simple_repeat 2 45 0 4 1246 584 269 22 49 chr6 86701671 86701855 -62815182 - B3A SINE B2 -16 182 4 4 1246 262 333 0 0 chr6 86702426 86702486 -62814551 + RMER15 LTR ERVL 403 462 -113 4 1246 2236 140 124 71 chr6 86702859 86702915 -62814122 + RLTR18B LTR ERVK 5 61 -451 4 1246 378 0 0 0 chr6 86702915 86702957 -62814080 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1246 2236 140 124 71 chr6 86702957 86703376 -62813661 + RLTR18B LTR ERVK 62 504 -8 4 1246 696 233 17 17 chr6 86704592 86704771 -62812266 - B3A SINE B2 -18 180 2 4 1246 305 259 92 54 chr6 86705201 86705385 -62811652 + Charlie1b DNA MER1_type 196 386 -137 4 1246 393 263 142 28 chr6 86705388 86705529 -62811508 - RSINE1 SINE B4 -8 157 1 4 1246 566 226 155 14 chr6 86705631 86705779 -62811258 - B4A SINE B4 -14 278 110 4 1246 198 103 0 0 chr6 86705831 86705860 -62811177 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 4 1246 839 214 61 63 chr6 86706467 86706793 -62810244 + RLTR20C LTR ERVK 52 487 -91 4 1246 216 111 0 0 chr6 86706793 86706829 -62810208 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1246 449 232 9 35 chr6 86706829 86706866 -62810171 + RLTR20C LTR ERVK 488 522 -56 4 1246 1194 108 0 0 chr6 86706992 86707261 -62809776 + (TG)n Simple_repeat Simple_repeat 1 269 0 4 1246 394 218 23 11 chr6 86707272 86707360 -62809677 - RSINE1 SINE B4 -49 116 28 4 1246 603 298 107 13 chr6 86707370 86707669 -62809368 - L1MA6 LINE L1 -4 6296 5970 4 1246 631 261 92 34 chr6 86708695 86708769 -62808268 + ID_B1 SINE B4 5 222 -2 4 1246 1023 68 0 0 chr6 86708769 86708901 -62808136 + B1_Mus1 SINE Alu 15 146 -2 4 1246 312 233 0 110 chr6 86709212 86709294 -62807743 - ID SINE ID -151 73 1 4 1246 306 0 0 0 chr6 86709335 86709369 -62807668 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1246 439 198 0 12 chr6 86710474 86710556 -62806481 - ID4_ SINE ID 0 83 3 5 1246 581 243 27 41 chr6 86711315 86711483 -62805554 + ID_B1 SINE B4 58 217 -75 5 1246 321 261 45 9 chr6 86711678 86711790 -62805247 + L1MC5 LINE L1 7733 7848 -113 5 1246 688 211 73 22 chr6 86712152 86712331 -62804706 - B3A SINE B2 -9 189 2 5 1246 573 252 266 47 chr6 86712501 86712734 -62804303 + MTE2b LTR MaLR 1 284 -95 5 1246 189 0 0 0 chr6 86712868 86712889 -62804148 + (C)n Simple_repeat Simple_repeat 1 21 0 5 1246 872 28 0 9 chr6 86712891 86712999 -62804038 - RLTR9B LTR ERVK -330 107 1 5 1246 183 265 20 0 chr6 86713022 86713071 -62803966 + MIRc SINE MIR 173 222 -46 5 1246 317 283 109 0 chr6 86713088 86713226 -62803811 + HAL1-2a_MD LINE L1 2305 2457 -567 5 1246 1228 48 0 13 chr6 86713270 86713419 -62803618 - B1_Mus2 SINE Alu 0 147 1 5 1246 264 196 98 0 chr6 86713683 86713734 -62803303 - ID4_ SINE ID -27 56 1 5 1246 231 36 0 0 chr6 86713974 86714002 -62803035 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1246 1295 91 11 0 chr6 86714027 86714203 -62802834 - B2_Mm1t SINE B2 -14 179 2 5 1246 2657 126 37 5 chr6 86714338 86714746 -62802291 + MTC LTR MaLR 1 421 0 5 1246 540 277 8 30 chr6 86715161 86715295 -62801742 + RSINE1 SINE B4 10 140 -25 5 1246 689 188 15 29 chr6 86715442 86715579 -62801458 + B1_Mur2 SINE Alu 1 135 -14 5 1246 311 343 7 14 chr6 86716200 86716345 -62800692 + (TATG)n Simple_repeat Simple_repeat 4 147 0 5 1246 228 242 81 0 chr6 86716732 86716794 -62800243 + MER5A1 DNA MER1_type 8 74 -92 5 1246 270 306 94 0 chr6 86716788 86716873 -62800164 + ID_B1 SINE B4 80 172 -52 5 1246 463 204 108 12 chr6 86716799 86716926 -62800111 + PB1D10 SINE Alu 11 149 0 5 1246 791 238 26 0 chr6 86716955 86717106 -62799931 + B3A SINE B2 5 159 -39 5 1246 387 0 0 0 chr6 86717113 86717156 -62799881 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1246 252 226 0 0 chr6 86717421 86717483 -62799554 + GA-rich Low_complexity Low_complexity 2 63 0 5 1246 319 201 34 55 chr6 86717602 86717729 -62799308 + MER57D LTR ERV1 112 267 -144 5 1246 255 31 0 0 chr6 86718005 86718037 -62799000 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 1246 525 183 0 0 chr6 86718032 86718136 -62798901 + (TA)n Simple_repeat Simple_repeat 1 104 0 5 1246 293 210 97 0 chr6 86718147 86718209 -62798828 - B1F2 SINE Alu -75 74 7 5 1246 527 257 0 108 chr6 86718155 86718312 -62798725 - ID_B1 SINE B4 -83 141 2 5 1246 238 227 22 0 chr6 86718370 86718426 -62798611 - L2c LINE L2 -318 3069 3010 5 1246 393 316 162 12 chr6 86718461 86718708 -62798329 + MER21B LTR ERV1 383 666 -197 5 1246 279 0 0 0 chr6 86718795 86718826 -62798211 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1246 653 238 34 34 chr6 86719280 86719428 -62797609 + B1_Mur1 SINE Alu 2 149 0 5 1246 279 0 0 0 chr6 86719551 86719582 -62797455 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1246 277 188 42 0 chr6 86719643 86719691 -62797346 + ID_B1 SINE B4 167 216 -8 5 1246 228 200 100 0 chr6 86719648 86719698 -62797339 + PB1 SINE Alu 73 127 0 5 1246 723 243 130 5 chr6 86719746 86719953 -62797084 + B4 SINE B4 42 274 -18 5 1246 468 0 0 0 chr6 86719958 86720010 -62797027 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1246 939 213 45 25 chr6 86720456 86720658 -62796379 - ID_B1 SINE B4 -16 208 3 5 1246 560 298 19 0 chr6 86720704 86720862 -62796175 + RSINE1 SINE B4 5 165 0 5 1246 1147 251 19 57 chr6 86721412 86721729 -62795308 + MTEa LTR MaLR 4 308 -71 5 1246 475 222 93 0 chr6 86722229 86722337 -62794700 + PB1D7 SINE Alu 1 118 -2 5 1246 438 167 17 0 chr6 86723127 86723206 -62793831 + B2_Mm2 SINE B2 1 86 -112 5 1246 560 268 65 45 chr6 86723324 86723523 -62793514 + B4 SINE B4 3 205 -87 5 1246 222 37 0 0 chr6 86723536 86723563 -62793474 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 5 1246 275 220 34 0 chr6 86723600 86723659 -62793378 + B4A SINE B4 197 257 -35 5 1246 243 61 0 0 chr6 86724110 86724143 -62792894 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1246 422 279 54 54 chr6 86724145 86724293 -62792744 - B1F SINE Alu -1 148 1 5 1246 212 328 0 0 chr6 86724237 86724301 -62792736 - B4A SINE B4 -151 141 78 5 1246 554 206 69 56 chr6 86724737 86724870 -62792167 + B1_Mur4 SINE Alu 3 137 -13 5 1246 261 83 0 0 chr6 86724870 86724906 -62792131 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 1246 725 252 62 22 chr6 86725611 86725831 -62791206 + B3A SINE B2 2 216 0 5 1246 196 54 26 51 chr6 86725891 86725930 -62791107 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1246 183 100 0 0 chr6 86726399 86726429 -62790608 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1246 1195 172 23 23 chr6 86726814 86727028 -62790009 + B3 SINE B2 3 216 0 5 1246 946 167 0 0 chr6 86727039 86727183 -62789854 - B1_Mur2 SINE Alu -3 146 3 5 1246 539 246 59 34 chr6 86728465 86728583 -62788454 - B4 SINE B4 0 292 172 5 1246 1415 65 5 37 chr6 86728697 86728888 -62788149 + B2_Mm2 SINE B2 2 186 -9 5 1246 228 294 19 19 chr6 86729346 86729450 -62787587 + L1M1 LINE L1 5504 5607 -693 5 1246 579 266 21 7 chr6 86729450 86729594 -62787443 + RSINE1 SINE B4 3 148 -17 5 1246 986 265 0 40 chr6 86729665 86729889 -62787148 + B3 SINE B2 1 215 -1 5 1246 269 286 104 22 chr6 86730009 86730191 -62786846 + L1MA7 LINE L1 5701 5897 -394 5 1246 216 257 27 54 chr6 86730231 86730305 -62786732 + ID_B1 SINE B4 83 154 -70 5 1246 554 264 31 0 chr6 86730432 86730595 -62786442 + L1MA7 LINE L1 6113 6280 -11 5 1246 742 141 27 53 chr6 86730658 86730808 -62786229 - B1_Mus1 SINE Alu -1 147 2 5 1246 621 218 51 36 chr6 86730835 86730961 -62786076 + ID_B1 SINE B4 79 211 -13 5 1246 216 0 0 0 chr6 86730961 86730985 -62786052 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1246 621 218 51 36 chr6 86730985 86730996 -62786041 + ID_B1 SINE B4 212 218 -6 5 1246 1026 152 198 0 chr6 86731010 86731187 -62785850 + B3 SINE B2 5 216 0 5 1246 930 255 45 86 chr6 86731215 86731507 -62785530 + B4A SINE B4 5 284 -8 5 1246 342 0 0 0 chr6 86731947 86731985 -62785052 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1246 378 143 0 0 chr6 86732077 86732140 -62784897 + (GGA)n Simple_repeat Simple_repeat 2 64 0 5 1246 387 256 23 0 chr6 86732217 86732303 -62784734 + RSINE1 SINE B4 53 140 -25 5 1246 396 0 0 0 chr6 86732307 86732351 -62784686 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1246 414 0 0 0 chr6 86732351 86732397 -62784640 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1246 274 350 28 55 chr6 86732402 86732511 -62784526 + ID_B1 SINE B4 68 173 -51 5 1246 341 262 36 53 chr6 86732417 86732530 -62784507 + PB1D10 SINE Alu 5 115 -2 5 1246 260 263 13 38 chr6 86732677 86732756 -62784281 + Charlie5 DNA MER1_type 19 95 -2529 5 1246 930 125 0 0 chr6 86732768 86732896 -62784141 - B3 SINE B2 -86 130 3 5 1246 484 278 73 32 chr6 86733009 86733228 -62783809 + Charlie5 DNA MER1_type 223 450 -2174 5 1246 498 17 0 0 chr6 86733235 86733294 -62783743 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1246 677 250 0 0 chr6 86733323 86733451 -62783586 - B1_Mur2 SINE Alu -12 137 10 5 1246 1702 26 0 0 chr6 86733517 86733709 -62783328 + B2_Mm1a SINE B2 2 193 0 5 1246 267 270 41 98 chr6 86733782 86733862 -62783175 + Charlie5 DNA MER1_type 2111 2194 -430 5 1246 1764 10 0 0 chr6 86733862 86734054 -62782983 - B2_Mm1a SINE B2 0 193 2 5 1246 267 270 41 98 chr6 86734054 86734096 -62782941 + Charlie5 DNA MER1_type 2195 2226 -398 5 1246 568 284 79 18 chr6 86734130 86734295 -62782742 - ID_B1 SINE B4 -48 176 2 5 1246 554 271 131 19 chr6 86734298 86734558 -62782479 + Charlie5 DNA MER1_type 2223 2511 -113 5 1246 207 0 0 0 chr6 86734702 86734725 -62782312 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 1246 300 91 0 0 chr6 86734786 86734830 -62782207 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1246 494 297 84 22 chr6 86734863 86735042 -62781995 - B4A SINE B4 -102 190 1 5 1246 719 128 27 7 chr6 86735273 86735423 -62781614 + GA-rich Low_complexity Low_complexity 1 153 0 5 1246 1203 75 0 0 chr6 86736314 86736460 -62780577 + B1_Mus2 SINE Alu 2 147 0 5 1246 234 125 0 0 chr6 86736460 86736508 -62780529 + (A)n Simple_repeat Simple_repeat 1 48 0 5 1246 1163 305 69 50 chr6 86736518 86737372 -62779665 + L1MA6 LINE L1 5279 6138 -162 5 1246 1082 201 36 23 chr6 86737374 86737593 -62779444 + ID_B1 SINE B4 3 224 0 5 1246 533 269 13 27 chr6 86737997 86738018 -62779019 + ID_B1 SINE B4 60 196 -28 5 1246 882 60 9 0 chr6 86738018 86738134 -62778903 + B1_Mus1 SINE Alu 1 117 -31 5 1246 225 0 0 0 chr6 86738134 86738159 -62778878 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1246 533 269 13 27 chr6 86738159 86738170 -62778867 + ID_B1 SINE B4 197 206 -18 5 1246 447 19 0 0 chr6 86738257 86738309 -62778728 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1246 651 287 52 16 chr6 86739378 86739569 -62777468 + B4 SINE B4 1 198 -94 5 1246 246 143 0 0 chr6 86739600 86739649 -62777388 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1246 330 283 25 66 chr6 86740017 86740138 -62776899 + PB1D10 SINE Alu 2 117 0 5 1246 722 179 0 0 chr6 86740161 86740278 -62776759 + B1_Mur2 SINE Alu 1 117 -32 5 1246 331 222 14 14 chr6 86740660 86740733 -62776304 - ID4_ SINE ID -9 74 2 5 1246 930 220 17 103 chr6 86741147 86741380 -62775657 + ID_B1 SINE B4 3 215 -9 5 1246 273 98 0 0 chr6 86741891 86741932 -62775105 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1246 279 0 0 0 chr6 86742077 86742108 -62774929 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1246 350 244 0 0 chr6 86742114 86742192 -62774845 - B3A SINE B2 -57 141 64 5 1246 294 314 47 0 chr6 86742451 86742537 -62774500 - ID_B1 SINE B4 -133 91 2 6 1246 226 213 21 0 chr6 86744705 86744752 -62772285 - B3 SINE B2 -7 209 162 6 1246 322 232 0 28 chr6 86745130 86745201 -62771836 + B3 SINE B2 147 215 -1 6 1246 1170 64 0 0 chr6 86745225 86745366 -62771671 + B1_Mus1 SINE Alu 2 142 -6 6 1246 1136 142 0 55 chr6 86745388 86745589 -62771448 + B3 SINE B2 27 216 0 6 1246 375 218 120 60 chr6 86745599 86745716 -62771321 + RMER10A LTR ERVL 1 124 -318 6 1246 1654 167 144 35 chr6 86745829 86746226 -62770811 - RMER10A LTR ERVL -2 440 1 6 1246 915 160 7 0 chr6 86746287 86746431 -62770606 + ID_B1 SINE B4 78 222 -2 6 1246 352 254 0 0 chr6 86746465 86746528 -62770509 + tRNA-Ala-GCY_ tRNA tRNA 2 64 -11 6 1246 368 332 96 28 chr6 86746564 86746846 -62770191 + HAL1 LINE L1 151 451 -2056 6 1246 574 352 114 65 chr6 86746907 86747399 -62769638 - MLT1H1 LTR MaLR -34 521 6 6 1246 476 198 0 73 chr6 86747628 86747764 -62769273 + RMER17C LTR ERVK 1 126 -284 6 1246 543 252 69 0 chr6 86747838 86747969 -62769068 + ID_B1 SINE B4 84 223 -1 6 1246 442 224 214 0 chr6 86748083 86748181 -62768856 + RSINE1 SINE B4 3 121 -44 6 1246 465 101 22 22 chr6 86748184 86748275 -62768762 + (TCC)n Simple_repeat Simple_repeat 3 93 0 6 1246 1159 88 0 0 chr6 86748275 86748422 -62768615 - B1_Mus1 SINE Alu 0 148 2 6 1246 252 0 0 0 chr6 86748478 86748506 -62768531 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 6 1246 264 193 11 108 chr6 86748560 86748653 -62768384 + MT2B2 LTR ERVL 174 257 -327 6 1246 616 160 9 0 chr6 86748586 86748692 -62768345 + B1_Mur3 SINE Alu 37 143 -6 6 1246 479 181 90 54 chr6 86748844 86748955 -62768082 - PB1D10 SINE Alu -2 115 1 6 1246 478 290 106 30 chr6 86748955 86749154 -62767883 - MER2 DNA MER2_type -121 224 11 6 1246 201 280 40 70 chr6 86749543 86749643 -62767394 - MIRb SINE MIR -8 260 164 6 1246 265 270 55 83 chr6 86749680 86749789 -62767248 + ORR1D1 LTR MaLR 1 106 -268 6 1246 1107 64 50 0 chr6 86749967 86750107 -62766930 + B1_Mus1 SINE Alu 2 148 0 6 1246 616 241 13 52 chr6 86750125 86750278 -62766759 + ID_B1 SINE B4 78 224 0 6 1246 21 0 0 0 chr6 86750278 86750299 -62766738 + AT_rich Low_complexity Low_complexity 1 21 0 6 1246 331 221 99 66 chr6 86750800 86750921 -62766116 + ID_B1 SINE B4 100 224 0 6 1246 522 191 129 22 chr6 86750941 86751080 -62765957 + B3A SINE B2 4 157 -41 6 1246 318 26 0 0 chr6 86751086 86751125 -62765912 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1246 525 200 11 0 chr6 86751419 86751514 -62765523 + B1_Mur2 SINE Alu 2 97 -52 6 1246 700 290 134 45 chr6 86751804 86752140 -62764897 + MTD LTR MaLR 10 375 -44 6 1246 550 185 0 0 chr6 86752695 86752787 -62764250 + B1_Mus1 SINE Alu 23 114 -34 6 1246 493 219 73 20 chr6 86752857 86752996 -62764041 - B1_Mur1 SINE Alu -12 137 1 6 1246 293 325 43 49 chr6 86752996 86753057 -62763980 - MT2B LTR ERVL -439 162 103 6 1246 318 278 21 43 chr6 86753506 86753519 -62763518 - PB1D10 SINE Alu -23 94 82 6 1246 691 242 97 5 chr6 86753519 86753714 -62763323 - ID_B1 SINE B4 -11 213 1 6 1246 337 288 25 0 chr6 86753714 86753794 -62763243 - B1F1 SINE Alu -65 84 3 6 1246 335 360 58 79 chr6 86754222 86754412 -62762625 - MER20 DNA MER1_type -32 187 2 6 1246 26 0 0 0 chr6 86754441 86754467 -62762570 + AT_rich Low_complexity Low_complexity 1 26 0 6 1246 419 260 30 46 chr6 86754486 86754595 -62762442 - RSINE1 SINE B4 -37 128 20 6 1246 253 288 169 52 chr6 86754711 86754744 -62762293 - B2_Mm2 SINE B2 -3 192 150 6 1246 312 27 0 0 chr6 86754744 86754781 -62762256 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1246 353 288 169 52 chr6 86754781 86754919 -62762118 - B3 SINE B2 -46 149 1 6 1246 343 256 325 6 chr6 86755234 86755391 -62761646 + ID_B1 SINE B4 2 208 -16 6 1246 255 93 0 0 chr6 86755391 86755434 -62761603 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1246 3192 45 89 12 chr6 86755572 86755977 -62761060 + RLTR10C LTR ERVK 1 436 0 6 1246 262 271 29 191 chr6 86756099 86756272 -62760765 - B1F SINE Alu 0 149 5 6 1246 435 187 9 19 chr6 86756367 86756477 -62760560 + MT2B LTR ERVL 382 475 -126 6 1246 279 0 0 0 chr6 86756865 86756896 -62760141 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1246 327 284 50 41 chr6 86757142 86757263 -62759774 + RSINE1 SINE B4 44 165 0 6 1246 443 244 0 0 chr6 86757772 86757858 -62759179 - L1MD LINE L1 -2944 3202 3117 6 1246 774 274 11 26 chr6 86757865 86758056 -62758981 - B3A SINE B2 -9 189 2 6 1246 733 262 0 76 chr6 86758116 86758314 -62758723 + B3 SINE B2 6 188 -28 6 1246 588 14 0 0 chr6 86758779 86758848 -62758189 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1246 275 274 0 64 chr6 86759018 86759096 -62757941 + ID4_ SINE ID 3 75 -8 6 1246 336 48 0 0 chr6 86759097 86759139 -62757898 + (GAGAA)n Simple_repeat Simple_repeat 4 45 0 6 1246 706 190 0 24 chr6 86759139 86759306 -62757731 + G-rich Low_complexity Low_complexity 4 166 0 6 1246 792 179 6 16 chr6 86759320 86759502 -62757535 + GA-rich Low_complexity Low_complexity 1 180 0 6 1246 463 336 0 8 chr6 86759619 86759742 -62757295 + B1_Mur1 SINE Alu 3 124 -25 6 1246 608 315 27 14 chr6 86760066 86760288 -62756749 + B4A SINE B4 2 226 -66 6 1246 330 221 0 83 chr6 86760457 86760541 -62756496 + B4A SINE B4 216 292 0 6 1246 322 344 8 90 chr6 86760574 86760640 -62756397 + ID_B1 SINE B4 102 157 -67 6 1246 1198 44 0 0 chr6 86760640 86760777 -62756260 + B1_Mus1 SINE Alu 1 137 -11 6 1246 330 45 0 0 chr6 86760777 86760821 -62756216 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 6 1246 322 344 8 90 chr6 86760821 86760887 -62756150 + ID_B1 SINE B4 158 223 -1 6 1246 235 278 91 85 chr6 86760969 86761068 -62755969 - MLT1K LTR MaLR -74 521 417 6 1246 360 0 0 0 chr6 86761068 86761108 -62755929 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1246 235 278 91 85 chr6 86761108 86761173 -62755864 - MLT1K LTR MaLR -179 416 356 6 1246 558 211 54 15 chr6 86761146 86761276 -62755761 - B1_Mur2 SINE Alu -7 142 8 6 1246 3389 135 20 22 chr6 86761983 86762332 -62754705 + RLTR20B3 LTR ERVK 35 383 -194 6 1246 2615 65 6 0 chr6 86762332 86762657 -62754380 + ORR1A2 LTR MaLR 1 327 0 6 1246 3389 135 20 22 chr6 86762657 86762851 -62754186 + RLTR20B3 LTR ERVK 384 577 0 6 1246 211 262 0 0 chr6 86762877 86762919 -62754118 + polypyrimidine Low_complexity Low_complexity 1 42 0 6 1246 633 258 29 12 chr6 86762919 86763089 -62753948 - ID_B1 SINE B4 -47 245 73 6 1246 772 211 196 22 chr6 86763183 86763367 -62753670 + B3 SINE B2 1 216 0 6 1246 876 236 157 80 chr6 86764480 86764779 -62752258 + ORR1E LTR MaLR 1 322 -37 6 1246 483 195 58 58 chr6 86764776 86764896 -62752141 + ID_B1 SINE B4 102 221 -3 6 1246 236 162 93 93 chr6 86764923 86764998 -62752039 + ORR1E LTR MaLR 305 379 0 6 1246 308 125 49 24 chr6 86765667 86765749 -62751288 + C-rich Low_complexity Low_complexity 2 85 0 6 1246 677 237 223 35 chr6 86765810 86766129 -62750908 - MTE2a LTR MaLR 0 379 1 6 1246 216 0 0 0 chr6 86766436 86766460 -62750577 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1246 278 224 185 62 chr6 86766572 86766653 -62750384 - ID_B1 SINE B4 -8 216 126 6 1246 542 269 67 0 chr6 86766680 86766814 -62750223 - RSINE1 SINE B4 -21 144 2 6 1246 447 216 111 8 chr6 86766814 86766913 -62750124 - ID_B1 SINE B4 -100 124 14 6 1246 237 222 89 89 chr6 86766849 86766928 -62750109 - BC1_Mm scRNA scRNA -70 82 4 6 1246 567 42 0 0 chr6 86767036 86767107 -62749930 - B1_Mur4 SINE Alu -6 144 74 6 1246 496 289 21 43 chr6 86767180 86767382 -62749655 - L1ME1 LINE L1 -378 5862 5658 6 1246 328 276 9 75 chr6 86767480 86767586 -62749451 + PB1D7 SINE Alu 3 101 -19 6 1246 914 260 103 12 chr6 86767620 86767873 -62749164 + B4 SINE B4 7 282 -10 6 1246 539 202 0 35 chr6 86767931 86768044 -62748993 + PB1D9 SINE Alu 1 109 -11 6 1246 322 272 165 0 chr6 86768079 86768182 -62748855 - L1MC LINE L1 -866 5467 5348 6 1246 544 245 0 0 chr6 86768234 86768340 -62748697 - PB1D10 SINE Alu -10 107 2 6 1246 311 265 53 97 chr6 86768437 86768550 -62748487 + RLTR25B LTR ERVK 402 509 -519 6 1246 836 58 0 0 chr6 86768480 86768583 -62748454 + B1_Mus1 SINE Alu 36 138 -10 6 1246 652 0 0 35 chr6 86768583 86768669 -62748368 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 6 1246 633 247 40 17 chr6 86768681 86768854 -62748183 + B3A SINE B2 5 181 -17 6 1246 281 208 125 0 chr6 86769169 86769241 -62747796 + PB1D9 SINE Alu 20 100 -20 6 1246 640 267 44 5 chr6 86769268 86769471 -62747566 + ID_B1 SINE B4 1 211 -13 6 1246 980 32 24 0 chr6 86769471 86769597 -62747440 + (TCTCC)n Simple_repeat Simple_repeat 5 133 0 6 1246 414 0 0 0 chr6 86769597 86769642 -62747395 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 6 155 753 178 0 30 chr6 86769653 86769786 -62747251 - B1_Mus2 SINE Alu -17 130 2 6 1247 200 245 0 54 chr6 86769805 86769861 -62747176 + G-rich Low_complexity Low_complexity 1 53 0 6 1247 216 149 0 0 chr6 86769861 86769908 -62747129 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 6 1247 412 265 30 16 chr6 86770691 86770877 -62746160 + Lx7 LINE L1 5591 5809 -491 6 1247 440 264 95 27 chr6 86771011 86771159 -62745878 + RSINE1 SINE B4 8 165 0 6 1247 1317 91 21 11 chr6 86771181 86771370 -62745667 + B2_Mm2 SINE B2 1 191 -4 6 1247 614 208 7 19 chr6 86771383 86771521 -62745516 + ID_B1 SINE B4 82 210 -14 6 1247 786 179 0 27 chr6 86771576 86771725 -62745312 + B1_Mur4 SINE Alu 6 150 0 7 1247 549 198 0 0 chr6 86771761 86771862 -62745175 + B1F1 SINE Alu 11 111 -38 7 1247 453 19 0 0 chr6 86772011 86772065 -62744972 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1247 540 196 35 9 chr6 86772094 86772207 -62744830 + PB1D9 SINE Alu 3 118 -2 7 1247 278 302 157 62 chr6 86773067 86773392 -62743645 - MLT1A0 LTR MaLR -3 362 7 7 1247 363 186 0 0 chr6 86773610 86773669 -62743368 - ID_B1 SINE B4 -2 222 164 7 1247 665 221 7 30 chr6 86773681 86773816 -62743221 - B3 SINE B2 -11 205 74 7 1247 582 266 68 10 chr6 86774219 86774386 -62742651 - RMER15 LTR ERVL -23 552 373 7 1247 270 0 0 0 chr6 86774386 86774416 -62742621 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1247 582 266 68 10 chr6 86774416 86774453 -62742584 - RMER15 LTR ERVL -203 372 337 7 1247 309 51 0 0 chr6 86774641 86774680 -62742357 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1247 882 221 87 5 chr6 86774695 86774891 -62742146 + ID_B1 SINE B4 5 216 -8 7 1247 345 268 30 30 chr6 86774971 86775071 -62741966 - PB1D10 SINE Alu -17 100 1 7 1247 233 222 0 0 chr6 86775364 86775409 -62741628 - ID4 SINE ID -10 73 29 7 1247 567 266 8 0 chr6 86775758 86775886 -62741151 + B1F2 SINE Alu 21 149 0 7 1247 704 195 70 0 chr6 86775888 86776016 -62741021 + B1_Mur2 SINE Alu 1 137 -12 7 1247 234 81 0 0 chr6 86776016 86776053 -62740984 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 7 1247 316 233 11 23 chr6 86776097 86776185 -62740852 + L1MC5 LINE L1 7110 7196 -765 7 1247 413 253 10 31 chr6 86776695 86776793 -62740244 - PB1D10 SINE Alu -10 107 12 7 1247 202 246 40 40 chr6 86776941 86777017 -62740020 + CT-rich Low_complexity Low_complexity 1 76 0 7 1247 392 246 0 71 chr6 86777020 86777136 -62739901 - B1F SINE Alu -6 143 38 7 1247 483 152 0 0 chr6 86777703 86777815 -62739222 + CT-rich Low_complexity Low_complexity 1 112 0 7 1247 629 162 61 15 chr6 86777866 86777998 -62739039 + B1_Mus2 SINE Alu 9 146 -1 7 1247 267 93 0 0 chr6 86777999 86778042 -62738995 + (CAAAAA)n Simple_repeat Simple_repeat 4 46 0 7 1247 256 317 24 12 chr6 86778066 86778149 -62738888 + RSINE1 SINE B4 3 86 -79 7 1247 542 248 93 26 chr6 86778191 86778460 -62738577 + MER63D DNA AcHobo 80 366 -695 7 1247 741 220 36 31 chr6 86778689 86778881 -62738156 - B3 SINE B2 -21 195 3 7 1247 1022 180 203 11 chr6 86779830 86780034 -62737003 + MTEb LTR MaLR 43 265 -114 7 1247 537 55 0 0 chr6 86780034 86780107 -62736930 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1247 1022 180 203 11 chr6 86780107 86780183 -62736854 + MTEb LTR MaLR 266 376 -3 7 1247 473 121 12 35 chr6 86780295 86780381 -62736656 - B1_Mur4 SINE Alu 0 150 67 7 1247 354 43 0 0 chr6 86780394 86780427 -62736610 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1247 1236 48 0 0 chr6 86780427 86780574 -62736463 - B1_Mm SINE Alu 0 147 1 7 1247 354 43 0 0 chr6 86780574 86780586 -62736451 + (T)n Simple_repeat Simple_repeat 1 12 0 7 1247 344 22 22 0 chr6 86780635 86780680 -62736357 + (TTAA)n Simple_repeat Simple_repeat 1 46 0 7 1247 1090 57 62 12 chr6 86781494 86781655 -62735382 + B2_Mm2 SINE B2 2 170 -25 7 1247 1132 195 14 9 chr6 86781661 86781873 -62735164 - B3 SINE B2 -3 213 1 7 1247 396 0 0 0 chr6 86781952 86781996 -62735041 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 1247 495 0 0 0 chr6 86781996 86782050 -62734987 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1247 778 180 7 13 chr6 86782052 86782204 -62734833 - B3A SINE B2 -45 153 3 7 1247 514 264 21 0 chr6 86782208 86782348 -62734689 - ID_B1 SINE B4 0 224 82 7 1247 279 0 0 0 chr6 86782374 86782405 -62734632 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1247 438 94 0 0 chr6 86782405 86782469 -62734568 - PB1D9 SINE Alu -11 109 46 7 1247 436 202 19 39 chr6 86782653 86782756 -62734281 - ID_B1 SINE B4 -16 208 108 7 1247 426 248 45 27 chr6 86783694 86783806 -62733231 - PB1D10 SINE Alu -1 116 3 7 1247 221 188 46 15 chr6 86783837 86783902 -62733135 + B4 SINE B4 2 68 -224 7 1247 378 0 0 0 chr6 86784064 86784106 -62732931 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1247 230 295 135 0 chr6 86784422 86784578 -62732459 + Charlie2a DNA MER1_type 1418 1594 -1267 7 1247 366 231 8 92 chr6 86784577 86784596 -62732441 + MT2B LTR ERVL 147 255 -346 7 1247 595 150 0 0 chr6 86784596 86784696 -62732341 + B1_Mm SINE Alu 1 100 -47 7 1247 367 337 78 6 chr6 86784719 86784898 -62732139 + Charlie2a DNA MER1_type 1668 1859 -1002 7 1247 22 0 0 0 chr6 86784973 86784995 -62732042 + AT_rich Low_complexity Low_complexity 1 22 0 7 1247 594 284 7 28 chr6 86785064 86785209 -62731828 + RSINE1 SINE B4 24 165 0 7 1247 299 85 0 21 chr6 86785251 86785299 -62731738 - B1F SINE Alu -7 142 96 7 1247 217 108 0 0 chr6 86785267 86785304 -62731733 - B1_Mur4 SINE Alu -51 99 63 7 1247 410 213 0 0 chr6 86785448 86785523 -62731514 + ID_B1 SINE B4 142 216 -8 7 1247 227 273 55 0 chr6 86785474 86785529 -62731508 + PB1D7 SINE Alu 61 118 -2 7 1247 1404 63 46 0 chr6 86785564 86785738 -62731299 + B2_Mm2 SINE B2 2 183 -12 7 1247 261 0 0 0 chr6 86785740 86785769 -62731268 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 7 1247 3498 120 103 34 chr6 86785806 86786504 -62730533 + RMER6A LTR ERVK 11 756 0 7 1247 774 237 92 5 chr6 86786522 86786717 -62730320 + B4 SINE B4 79 290 -2 7 1247 596 218 195 32 chr6 86786778 86786963 -62730074 + B3 SINE B2 2 216 0 7 1247 297 315 83 61 chr6 86787018 86787150 -62729887 + B3A SINE B2 74 208 -8 7 1247 1233 48 0 0 chr6 86787248 86787394 -62729643 - B1_Mm SINE Alu 0 147 2 7 1247 302 259 7 61 chr6 86787407 86787555 -62729482 + Charlie2a DNA MER1_type 2374 2513 -348 7 1247 231 75 0 24 chr6 86787564 86787605 -62729432 + B1_Mur4 SINE Alu 109 148 -2 7 1247 243 0 0 0 chr6 86787605 86787632 -62729405 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1247 428 272 38 19 chr6 86787715 86787820 -62729217 - RSINE1 SINE B4 -41 124 18 7 1247 467 240 108 0 chr6 86787881 86788010 -62729027 - ID_B1 SINE B4 -1 223 81 7 1247 22 35 0 0 chr6 86788465 86788494 -62728543 + AT_rich Low_complexity Low_complexity 1 29 0 7 1247 952 233 5 23 chr6 86788500 86788720 -62728317 - B3 SINE B2 0 216 1 7 1247 4261 180 88 13 chr6 86788902 86789743 -62727294 - RMER13B LTR ERVK 0 908 5 7 1247 26 0 0 0 chr6 86789968 86789994 -62727043 + AT_rich Low_complexity Low_complexity 1 26 0 7 1247 658 213 145 16 chr6 86789998 86790184 -62726853 + B3 SINE B2 5 214 -2 7 1247 314 215 165 0 chr6 86790751 86790830 -62726207 + RMER1A Other Other 176 267 -763 7 1247 3328 158 46 16 chr6 86790838 86791280 -62725757 + RMER1B Other Other 480 918 -148 7 1247 189 0 0 0 chr6 86791280 86791301 -62725736 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1247 3328 158 46 16 chr6 86791301 86791425 -62725612 + RMER1B Other Other 919 1062 -4 7 1247 742 230 29 29 chr6 86791539 86791749 -62725288 + B3 SINE B2 1 210 -6 7 1247 733 142 23 30 chr6 86791916 86792047 -62724990 - B1_Mur1 SINE Alu -18 131 2 7 1247 469 274 0 17 chr6 86792404 86792523 -62724514 - PB1D10 SINE Alu 0 117 1 7 1247 279 260 94 19 chr6 86792592 86792698 -62724339 + ID_B1 SINE B4 106 219 -5 7 1247 482 194 119 16 chr6 86792800 86792926 -62724111 - RMER5 LTR ERV1 -3 531 393 7 1247 785 169 0 21 chr6 86792931 86793076 -62723961 - B1_Mus1 SINE Alu -1 147 6 7 1247 186 43 0 0 chr6 86793080 86793103 -62723934 + (CCA)n Simple_repeat Simple_repeat 2 24 0 7 1247 813 229 114 32 chr6 86793109 86793452 -62723585 - RMER5 LTR ERV1 -131 403 33 7 1247 631 284 45 16 chr6 86793927 86794170 -62722867 + B4A SINE B4 2 251 -41 7 1247 311 290 121 0 chr6 86794439 86794563 -62722474 - MER5A DNA MER1_type 0 189 51 7 1247 1433 195 158 20 chr6 86794865 86795235 -62721802 + MTD LTR MaLR 1 405 -14 7 1247 2431 195 122 81 chr6 86795235 86795926 -62721111 + MTD-int LTR MaLR 1 719 -539 7 1247 965 151 77 11 chr6 86795913 86796094 -62720943 + MTD LTR MaLR 222 414 -5 7 1247 358 309 52 0 chr6 86796811 86796947 -62720090 + MIR SINE MIR 16 158 -104 7 1247 937 135 0 26 chr6 86796952 86797104 -62719933 + B1_Mus1 SINE Alu 1 148 0 7 1247 240 35 0 0 chr6 86797104 86797133 -62719904 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1247 507 192 20 0 chr6 86797354 86797453 -62719584 + B1_Mur1 SINE Alu 29 129 -20 7 1247 1059 102 0 26 chr6 86798104 86798255 -62718782 - B1_Mus1 SINE Alu 0 148 2 7 1247 211 218 33 33 chr6 86799447 86799537 -62717500 + (CGGG)n Simple_repeat Simple_repeat 1 90 0 7 1247 287 321 0 0 chr6 86801969 86802053 -62714984 - L2b LINE L2 -1 3374 3291 7 1247 302 320 45 45 chr6 86802760 86802914 -62714123 - RSINE1 SINE B4 -10 155 2 7 1247 720 119 0 0 chr6 86802924 86803042 -62713995 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 7 1247 537 16 0 0 chr6 86803045 86803107 -62713930 + (TCTCC)n Simple_repeat Simple_repeat 1 62 0 7 1247 203 321 24 36 chr6 86805767 86805851 -62711186 - L2b LINE L2 -258 3129 3047 7 1247 330 299 123 11 chr6 86805908 86806087 -62710950 - MER3 DNA MER1_type -1 208 10 7 1247 565 226 30 0 chr6 86806804 86806937 -62710100 + B1_Mur2 SINE Alu 2 138 -11 7 1247 267 31 0 0 chr6 86806938 86806970 -62710067 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 7 1247 669 220 176 33 chr6 86807130 86807459 -62709578 - L1MB3 LINE L1 -215 5968 5593 7 1247 384 22 0 0 chr6 86807475 86807520 -62709517 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1247 426 321 9 0 chr6 86807524 86807636 -62709401 - RSINE1 SINE B4 -40 125 13 7 1247 650 257 96 11 chr6 86807760 86807937 -62709100 - B3A SINE B2 -6 192 1 7 1247 413 284 67 0 chr6 86807945 86808079 -62708958 - ID_B1 SINE B4 0 224 82 8 1247 636 200 20 88 chr6 86808119 86808267 -62708770 - B1_Mur2 SINE Alu -7 142 5 8 1247 293 228 152 0 chr6 86808293 86808372 -62708665 - ID_B1 SINE B4 -56 168 78 8 1247 650 225 95 5 chr6 86808372 86808665 -62708372 - L1MB3 LINE L1 -695 5488 5175 7 1247 206 241 52 0 chr6 86809128 86809186 -62707851 - MIRc SINE MIR -58 210 150 8 1247 343 157 114 0 chr6 86809323 86809393 -62707644 - BC1_Mm scRNA scRNA -72 80 3 8 1247 444 176 40 5 chr6 86809412 86809519 -62707518 - B1_Mus2 SINE Alu 0 120 3 8 1247 374 172 10 94 chr6 86809437 86809533 -62707504 - MT2B LTR ERVL -359 242 155 8 1247 732 320 64 12 chr6 86809828 86810157 -62706880 - MLT1A0 LTR MaLR 0 365 20 8 1247 210 250 72 14 chr6 86810493 86810562 -62706475 - BC1_Mm scRNA scRNA -71 81 9 8 1247 501 288 39 19 chr6 86810633 86810789 -62706248 + RSINE1 SINE B4 3 161 -4 8 1247 266 238 63 0 chr6 86812074 86812137 -62704900 - ID4 SINE ID -16 67 1 8 1247 747 199 158 21 chr6 86812163 86812353 -62704684 - B3 SINE B2 0 216 1 8 1247 633 238 170 26 chr6 86812360 86812554 -62704483 - ID_B1 SINE B4 0 224 3 8 1247 220 266 73 37 chr6 86812561 86812580 -62704457 - PB1D10 SINE Alu -20 97 13 8 1247 272 222 48 0 chr6 86812580 86812643 -62704394 - ID_B1 SINE B4 -65 159 94 8 1247 800 272 65 16 chr6 86812662 86812729 -62704308 - B4 SINE B4 0 292 228 8 1247 225 0 0 0 chr6 86812729 86812754 -62704283 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1247 800 272 42 25 chr6 86812754 86812959 -62704078 - B4 SINE B4 -65 227 12 8 1247 281 284 34 17 chr6 86812956 86813074 -62703963 - B1F SINE Alu -5 144 25 8 1247 2962 95 77 0 chr6 86813299 86813730 -62703307 - L1_Mus3 LINE L1 -4 6634 6171 8 1247 1421 79 16 0 chr6 86814270 86814460 -62702577 + B2_Mm2 SINE B2 3 195 0 8 1247 243 0 0 0 chr6 86814895 86814922 -62702115 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1247 225 65 0 0 chr6 86815332 86815363 -62701674 + (TTA)n Simple_repeat Simple_repeat 1 31 0 8 1247 333 0 0 0 chr6 86815764 86815801 -62701236 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 1247 423 0 0 0 chr6 86815801 86815847 -62701190 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1247 180 111 0 0 chr6 86815905 86815932 -62701105 + (CTTTG)n Simple_repeat Simple_repeat 1 27 0 8 1247 387 304 2 8 chr6 86815945 86816060 -62700977 - PB1D7 SINE Alu -37 112 1 8 1247 289 275 48 48 chr6 86816369 86816453 -62700584 - PB1D10 SINE Alu -31 86 3 8 1247 198 0 0 0 chr6 86816512 86816534 -62700503 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 8 1247 737 193 7 7 chr6 86816534 86816670 -62700367 - B1_Mur1 SINE Alu -13 136 1 8 1247 232 311 83 16 chr6 86816858 86816979 -62700058 + L2a LINE L2 3278 3406 -20 8 1247 255 206 31 16 chr6 86817317 86817381 -62699656 + GA-rich Low_complexity Low_complexity 4 68 0 8 1247 287 276 155 40 chr6 86817906 86818106 -62698931 - Tigger15a DNA TcMar -359 356 134 8 1247 359 272 33 0 chr6 86818527 86818619 -62698418 + PB1D10 SINE Alu 22 116 -1 8 1247 576 139 216 9 chr6 86818727 86818843 -62698194 + B1_Mur3 SINE Alu 5 144 -5 8 1247 328 239 23 117 chr6 86819175 86819303 -62697734 - PB1D10 SINE Alu 0 117 2 8 1247 22 35 0 0 chr6 86819306 86819335 -62697702 + AT_rich Low_complexity Low_complexity 1 29 0 8 1247 566 191 102 16 chr6 86819836 86819964 -62697073 + B1_Mur3 SINE Alu 7 145 -4 8 1247 216 0 0 0 chr6 86820781 86820805 -62696232 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1247 429 266 9 0 chr6 86820815 86820924 -62696113 - Charlie2b DNA MER1_type -2269 513 404 8 1247 677 221 24 0 chr6 86821050 86821177 -62695860 - B1_Mur1 SINE Alu -16 133 4 8 1247 684 139 108 0 chr6 86821380 86821509 -62695528 + B1_Mur3 SINE Alu 1 143 -6 8 1247 1031 127 0 20 chr6 86822339 86822492 -62694545 - B1_Mur4 SINE Alu 0 150 1 8 1247 509 271 3 13 chr6 86822520 86822649 -62694388 - B1_Mur1 SINE Alu -21 127 1 8 1247 1300 93 11 5 chr6 86822696 86822880 -62694157 + B2_Mm2 SINE B2 3 187 -8 8 1247 769 241 49 20 chr6 86822907 86823110 -62693927 + B4A SINE B4 1 209 -83 8 1247 330 225 67 0 chr6 86823580 86823669 -62693368 - MER2 DNA MER2_type -40 305 211 8 1247 356 241 54 36 chr6 86823677 86823789 -62693248 - PB1D10 SINE Alu 0 117 4 8 1247 274 269 83 37 chr6 86823825 86823933 -62693104 - MER2 DNA MER2_type -232 113 1 8 1247 1095 88 0 13 chr6 86824039 86824189 -62692848 - B1_Mus1 SINE Alu 0 148 1 8 1247 411 269 17 116 chr6 86825015 86825196 -62691841 + MER20 DNA MER1_type 1 163 -56 8 1247 336 255 68 10 chr6 86825353 86825456 -62691581 + PB1D10 SINE Alu 1 109 -8 8 1247 263 291 38 0 chr6 86825655 86825734 -62691303 - L1MB5 LINE L1 -37 6137 6056 8 1247 249 310 11 45 chr6 86825801 86825812 -62691225 - ID_B1 SINE B4 -42 182 98 8 1247 269 289 13 13 chr6 86825812 86825889 -62691148 - PB1D10 SINE Alu -24 93 17 8 1247 480 77 0 0 chr6 86825982 86826047 -62690990 + (TA)n Simple_repeat Simple_repeat 2 66 0 8 1247 238 336 16 89 chr6 86826068 86826192 -62690845 - B3A SINE B2 -16 182 68 8 1247 297 140 0 0 chr6 86826317 86826374 -62690663 + (CAGAGA)n Simple_repeat Simple_repeat 3 59 0 8 1247 706 134 155 16 chr6 86826740 86826869 -62690168 - B1_Mur1 SINE Alu -1 148 2 8 1247 428 280 120 18 chr6 86826952 86827119 -62689918 - MLT1C LTR MaLR -54 413 230 8 1247 1467 145 12 15 chr6 86827165 86827424 -62689613 + MTD LTR MaLR 1 258 -161 8 1247 725 223 18 6 chr6 86827475 86827642 -62689395 - MTD LTR MaLR 0 419 251 8 1247 653 241 14 7 chr6 86827834 86827980 -62689057 + B1F SINE Alu 1 147 -2 8 1247 1897 180 35 22 chr6 86828149 86828518 -62688519 + ORR1D1 LTR MaLR 1 374 0 8 1247 1339 68 68 0 chr6 86828733 86828909 -62688128 + B2_Mm2 SINE B2 2 189 -6 8 1247 799 190 30 71 chr6 86828964 86829162 -62687875 + B3 SINE B2 4 193 -2 8 1247 274 301 80 0 chr6 86829306 86829419 -62687618 + B1_Mus1 SINE Alu 26 147 -1 8 1247 320 266 10 31 chr6 86829324 86829421 -62687616 + ID_B1 SINE B4 130 224 0 8 1247 2102 237 48 2 chr6 86829424 86829928 -62687109 + L1MB3 LINE L1 5476 6002 -181 8 1247 283 266 0 15 chr6 86829993 86830058 -62686979 - RSINE1 SINE B4 -93 72 9 8 1247 836 135 53 60 chr6 86830074 86830224 -62686813 + B1_Mur4 SINE Alu 2 150 0 8 1247 615 196 34 0 chr6 86830569 86830717 -62686320 + RCHARR1 DNA MER1_type 345 497 -477 8 1247 833 203 13 19 chr6 86830718 86830940 -62686097 + B3A SINE B2 1 212 -4 8 1247 481 216 39 16 chr6 86830950 86831077 -62685960 + RCHARR1 DNA MER1_type 478 607 -367 8 1247 338 234 52 21 chr6 86831065 86831161 -62685876 + B3A SINE B2 96 194 -4 8 1247 826 231 113 11 chr6 86831170 86831454 -62685583 + RCHARR1 DNA MER1_type 588 900 -74 8 1247 241 135 0 0 chr6 86831471 86831508 -62685529 + B2_Mm2 SINE B2 1 37 -158 8 1247 461 363 72 85 chr6 86831572 86832018 -62685019 + MER21B LTR ERV1 373 812 -51 8 1247 456 171 22 37 chr6 86832450 86832554 -62684483 + MTC LTR MaLR 1 94 -325 8 1247 207 0 0 0 chr6 86832554 86832577 -62684460 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 1247 453 189 12 190 chr6 86832577 86832635 -62684402 + MTC LTR MaLR 95 134 -285 8 1247 217 212 197 0 chr6 86832881 86832947 -62684090 + PB1D10 SINE Alu 11 89 -28 8 1247 209 57 29 0 chr6 86832959 86832994 -62684043 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 8 1247 263 175 167 48 chr6 86833197 86833281 -62683756 - PB1D9 SINE Alu -14 135 42 8 1247 198 6 5 154 chr6 86833295 86833483 -62683554 + CT-rich Low_complexity Low_complexity 18 177 0 8 1247 390 336 81 14 chr6 86833903 86834187 -62682850 + L2a LINE L2 3082 3384 -42 8 1247 1103 239 65 89 chr6 86834201 86834618 -62682419 - MTD LTR MaLR -12 407 1 8 1247 417 235 10 0 chr6 86835038 86835140 -62681897 - B4A SINE B4 -189 103 1 8 1247 205 313 163 20 chr6 86835172 86835325 -62681712 - L2c LINE L2 -67 3320 3146 8 1247 803 207 14 0 chr6 86835689 86835834 -62681203 - B1_Mur3 SINE Alu -1 148 2 8 1247 713 244 19 77 chr6 86837146 86837355 -62679682 - B3A SINE B2 0 198 2 8 1247 25 51 0 0 chr6 86837374 86837413 -62679624 + AT_rich Low_complexity Low_complexity 1 39 0 8 1247 189 0 0 0 chr6 86837720 86837741 -62679296 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 8 1247 792 136 41 35 chr6 86837742 86837887 -62679150 - B1_Mur3 SINE Alu -1 148 3 8 1247 1294 97 11 0 chr6 86838077 86838253 -62678784 + B2_Mm1t SINE B2 2 179 -14 8 1247 552 68 0 0 chr6 86838966 86839039 -62677998 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 8 1247 937 203 242 74 chr6 86839105 86839604 -62677433 - L1MC4 LINE L1 -239 7803 7221 8 1247 468 281 106 11 chr6 86840015 86840195 -62676842 - B3 SINE B2 -19 197 1 8 1247 557 255 110 0 chr6 86840238 86840383 -62676654 - B4A SINE B4 -126 166 6 8 1247 232 266 15 15 chr6 86840472 86840537 -62676500 + ID4 SINE ID 5 69 -14 8 1247 397 270 6 69 chr6 86841085 86841260 -62675777 - L1M5 LINE L1 -3224 2922 2759 8 1247 517 206 88 0 chr6 86841279 86841415 -62675622 - Charlie12 DNA MER1_type -3 2870 2723 8 1247 358 276 55 8 chr6 86841448 86841576 -62675461 - L1MD LINE L1 -3417 2729 2596 8 1247 1054 107 0 0 chr6 86841602 86841752 -62675285 + B2_Mm2 SINE B2 3 152 -43 8 1247 524 15 0 15 chr6 86841752 86841818 -62675219 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1247 304 245 176 0 chr6 86842570 86842672 -62674365 - PB1D7 SINE Alu 0 120 1 9 1247 1178 129 124 0 chr6 86843508 86843709 -62673328 - URR1A DNA MER1_type 0 226 1 9 1247 436 272 18 0 chr6 86843835 86843949 -62673088 - PB1D10 SINE Alu -1 116 1 9 1247 3509 121 16 35 chr6 86845189 86845762 -62671275 - Lx3A LINE L1 -14 6967 6406 9 1247 5505 63 85 20 chr6 86845762 86846919 -62670118 + Lx3_Mus LINE L1 5086 6325 -684 9 1247 192 299 147 20 chr6 86846963 86847113 -62669924 + MER5B DNA MER1_type 4 172 -6 9 1247 477 0 0 0 chr6 86849331 86849384 -62667653 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1247 195 42 0 0 chr6 86849744 86849768 -62667269 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 9 1247 728 119 8 0 chr6 86849872 86849990 -62667047 + (TTC)n Simple_repeat Simple_repeat 1 119 0 9 1247 652 278 57 24 chr6 86849991 86850229 -62666808 - B4 SINE B4 -46 246 2 9 1247 180 0 0 0 chr6 86850312 86850332 -62666705 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1247 1281 124 130 31 chr6 86850565 86850868 -62666169 - ORR1B1 LTR MaLR -8 318 1 9 1247 24 0 0 0 chr6 86852225 86852249 -62664788 + AT_rich Low_complexity Low_complexity 1 24 0 9 1247 22 0 0 0 chr6 86852469 86852491 -62664546 + AT_rich Low_complexity Low_complexity 1 22 0 9 1247 427 252 17 46 chr6 86852716 86852855 -62664182 + PB1D10 SINE Alu 4 149 -1 9 1247 28 0 0 0 chr6 86854550 86854578 -62662459 + AT_rich Low_complexity Low_complexity 1 28 0 9 1247 291 260 0 14 chr6 86855684 86855758 -62661279 + MIRb SINE MIR 154 226 -42 9 1247 982 198 28 24 chr6 86856031 86856243 -62660794 - B3 SINE B2 -1 215 3 9 1247 601 246 8 0 chr6 86856302 86856428 -62660609 - B1_Mm SINE Alu -20 127 1 9 1247 180 111 0 0 chr6 86856435 86856462 -62660575 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 9 1247 1204 42 0 0 chr6 86856489 86856631 -62660406 - B1_Mus2 SINE Alu -5 142 1 9 1247 391 191 130 31 chr6 86856965 86857127 -62659910 - MER96B DNA hAT -121 296 119 9 1247 431 229 73 37 chr6 86857176 86857285 -62659752 - ID_B1 SINE B4 -34 190 78 9 1247 335 303 58 90 chr6 86857601 86857757 -62659280 + RSINE1 SINE B4 2 152 -13 9 1247 347 141 16 0 chr6 86857763 86857827 -62659210 + CT-rich Low_complexity Low_complexity 1 65 0 9 1247 22 35 0 0 chr6 86858085 86858114 -62658923 + AT_rich Low_complexity Low_complexity 1 29 0 9 1247 675 266 26 0 chr6 86858227 86858381 -62658656 - ID_B1 SINE B4 -1 223 66 9 1247 355 80 0 0 chr6 86858413 86858463 -62658574 + B1_Mus2 SINE Alu 1 50 -97 9 1247 180 0 0 0 chr6 86858546 86858566 -62658471 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1247 826 65 81 0 chr6 86858577 86858700 -62658337 - B2_Mm2 SINE B2 -62 133 1 9 1247 230 280 107 78 chr6 86859397 86859465 -62657572 - MER96B DNA hAT -1 416 340 9 1247 2386 118 93 16 chr6 86859465 86859852 -62657185 - MTC LTR MaLR 0 421 5 9 1247 230 280 107 78 chr6 86859852 86859988 -62657049 - MER96B DNA hAT -78 339 206 9 1247 201 74 0 0 chr6 86860240 86860267 -62656770 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1247 547 206 20 137 chr6 86860309 86860455 -62656582 + RSINE1 SINE B4 4 132 -33 9 1247 381 243 52 0 chr6 86860536 86860683 -62656354 - L1MA4 LINE L1 -21 6279 6120 9 1247 189 195 0 0 chr6 86860870 86860911 -62656126 + CT-rich Low_complexity Low_complexity 2 42 0 9 1247 1042 113 0 7 chr6 86860951 86861094 -62655943 - B1_Mur4 SINE Alu -8 142 1 9 1247 658 143 119 0 chr6 86861948 86862074 -62654963 - B1_Mur1 SINE Alu -6 143 3 9 1247 666 37 0 0 chr6 86862092 86862173 -62654864 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 9 1247 531 45 0 0 chr6 86862173 86862239 -62654798 + (TC)n Simple_repeat Simple_repeat 2 67 0 9 1247 1087 65 65 0 chr6 86862239 86862377 -62654660 - B1_Mus2 SINE Alu 0 147 1 9 1247 351 248 17 84 chr6 86862801 86862920 -62654117 + PB1D10 SINE Alu 6 116 -1 9 1247 413 327 38 53 chr6 86862953 86863218 -62653819 + L1ME2z LINE L1 5915 6175 -269 9 1247 309 259 25 0 chr6 86863523 86863604 -62653433 + ID4_ SINE ID 1 83 0 9 1247 783 214 25 46 chr6 86863848 86863859 -62653178 - B3A SINE B2 -6 192 184 9 1247 1007 65 0 14 chr6 86863859 86864000 -62653037 + (TCTA)n Simple_repeat Simple_repeat 3 141 0 9 1247 783 214 25 46 chr6 86864000 86864184 -62652853 - B3A SINE B2 -15 183 1 9 1247 520 262 40 0 chr6 86864207 86864333 -62652704 + RSINE1 SINE B4 14 144 -21 9 1247 852 147 43 77 chr6 86864349 86864556 -62652481 - RMER1B Other Other -3 1063 864 9 1247 2136 202 78 17 chr6 86864678 86865253 -62651784 - RMER1B Other Other -153 913 242 9 1247 198 0 0 0 chr6 86865957 86865979 -62651058 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 9 1247 657 0 0 0 chr6 86867883 86867956 -62649081 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 9 1247 434 273 133 8 chr6 86869435 86869650 -62647387 + L1ME2 LINE L1 5686 5923 -241 9 1247 315 49 0 0 chr6 86870237 86870278 -62646759 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 9 1247 497 273 23 0 chr6 86870289 86870417 -62646620 - RSINE1 SINE B4 -34 131 1 9 1247 1035 257 29 4 chr6 86870472 86870745 -62646292 + B4 SINE B4 1 280 -12 9 1247 958 142 0 13 chr6 86871021 86871171 -62645866 + B1_Mur4 SINE Alu 2 149 -1 9 1247 533 277 14 14 chr6 86871201 86871344 -62645693 + B1F SINE Alu 1 143 -6 9 1247 1747 21 0 0 chr6 86872212 86872405 -62644632 - B2_Mm1t SINE B2 0 193 1 9 1247 232 290 72 36 chr6 86873117 86873228 -62643809 + PB1D10 SINE Alu 3 117 0 9 1247 650 138 34 8 chr6 86873310 86873427 -62643610 + PB1D9 SINE Alu 1 120 0 9 1247 1196 62 0 7 chr6 86873444 86873583 -62643454 + B1_Mus1 SINE Alu 2 140 -8 9 1247 216 0 0 0 chr6 86873583 86873607 -62643430 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1247 253 195 49 0 chr6 86875149 86875231 -62641806 - Lx9 LINE L1 -101 7543 7458 9 1247 1553 283 99 21 chr6 86875271 86875971 -62641066 - Lx8 LINE L1 -33 7440 6687 9 1247 22 0 0 0 chr6 86876433 86876455 -62640582 + AT_rich Low_complexity Low_complexity 1 22 0 9 1247 582 244 58 64 chr6 86876462 86876523 -62640514 + B3A SINE B2 7 67 -131 9 1247 3061 78 2 17 chr6 86876523 86876929 -62640108 - MTB LTR MaLR 0 400 1 9 1247 582 244 58 64 chr6 86876929 86877055 -62639982 + B3A SINE B2 68 193 -5 9 1247 1406 85 32 0 chr6 86877199 86877387 -62639650 + B2_Mm2 SINE B2 2 195 0 9 1247 212 79 53 0 chr6 86877967 86878005 -62639032 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 9 1247 2236 107 19 0 chr6 86878771 86879088 -62637949 + ORR1A2 LTR MaLR 1 323 -4 9 1247 722 284 53 58 chr6 86879358 86879618 -62637419 - L1MD LINE L1 -1027 5119 4869 9 1247 293 275 14 0 chr6 86879618 86879687 -62637350 + ID4 SINE ID 5 74 -9 9 1247 722 284 53 58 chr6 86879687 86879804 -62637233 - L1MD LINE L1 -1278 4868 4745 9 1247 359 269 135 27 chr6 86879821 86879932 -62637105 - ID_B1 SINE B4 -16 208 86 9 1247 437 212 7 90 chr6 86879972 86879996 -62637041 - L1MD LINE L1 -1500 4646 4622 9 1247 803 252 154 28 chr6 86879996 86880315 -62636722 - ORR1E LTR MaLR 0 359 1 9 1247 437 212 7 90 chr6 86880315 86880435 -62636602 - L1MD LINE L1 -1525 4621 4514 9 1247 1091 106 0 12 chr6 86880435 86880607 -62636430 + B2_Mm2 SINE B2 1 170 -25 9 1247 303 292 40 7 chr6 86880659 86880807 -62636230 - L1MD LINE L1 -1621 4525 4373 9 1247 279 225 113 0 chr6 86880893 86880964 -62636073 - L1MD LINE L1 -1788 4358 4280 9 1247 431 237 121 0 chr6 86880980 86881124 -62635913 - L1MD LINE L1 -1984 4162 4001 9 1247 1328 254 63 10 chr6 86882337 86882731 -62634306 - MTD LTR MaLR 0 419 5 9 1247 1098 95 0 0 chr6 86883105 86883284 -62633753 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 1247 1198 144 109 0 chr6 86883634 86883835 -62633202 + URR1B DNA MER1_type 1 223 -2 9 1247 252 0 0 0 chr6 86884978 86885006 -62632031 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1247 350 273 0 0 chr6 86887395 86887472 -62629565 - ID4_ SINE ID -5 78 2 9 1247 191 254 127 0 chr6 86887605 86887660 -62629377 - MIRb SINE MIR -14 254 193 9 1247 207 259 88 53 chr6 86887651 86887765 -62629272 - MIRm SINE MIR -113 163 46 9 1247 483 286 177 48 chr6 86888901 86889217 -62627820 + ORR1E LTR MaLR 1 357 -2 9 1247 297 299 221 14 chr6 86890028 86890394 -62626643 + L2a LINE L2 2985 3426 0 9 1247 259 314 66 9 chr6 86892100 86892206 -62624831 + MIR SINE MIR 41 152 -110 9 1247 485 158 12 0 chr6 86892322 86892404 -62624633 - BC1_Mm scRNA scRNA -68 84 2 9 1247 1692 26 0 0 chr6 86892418 86892609 -62624428 - B2_Mm1a SINE B2 -1 192 2 9 1247 186 71 0 0 chr6 86893211 86893239 -62623798 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1247 25 0 0 0 chr6 86893428 86893453 -62623584 + AT_rich Low_complexity Low_complexity 1 25 0 9 1247 392 191 63 11 chr6 86894788 86894883 -62622154 + PB1D10 SINE Alu 18 117 0 9 1247 1173 152 58 10 chr6 86896291 86896497 -62620540 - B3 SINE B2 0 216 1 9 1247 189 147 0 0 chr6 86897769 86897803 -62619234 + (CTTA)n Simple_repeat Simple_repeat 1 34 0 9 1247 886 185 0 0 chr6 86897807 86897942 -62619095 - B1_Mur2 SINE Alu -12 137 3 9 1247 991 298 82 11 chr6 86899691 86900068 -62616969 - Lx8 LINE L1 -2 7471 7068 9 1247 532 261 0 0 chr6 86900590 86900705 -62616332 - PB1D10 SINE Alu -1 116 2 9 1248 531 288 46 88 chr6 86901749 86901943 -62615094 - B3A SINE B2 0 198 13 9 1248 1187 209 116 7 chr6 86901938 86902241 -62614796 - ORR1D2 LTR MaLR -34 336 1 9 1248 239 357 83 36 chr6 86902337 86902529 -62614508 - MLT1J LTR MaLR -242 270 70 9 1248 759 241 15 30 chr6 86902682 86902883 -62614154 - B3A SINE B2 0 198 1 9 1248 4325 216 58 48 chr6 86903358 86904474 -62612563 - Lx7 LINE L1 0 7696 6569 9 1248 302 285 191 73 chr6 86904527 86904773 -62612264 + B4 SINE B4 1 275 -17 1 1248 615 180 9 9 chr6 86906078 86906190 -62610847 - PB1D9 SINE Alu -8 112 1 1 1248 195 139 0 0 chr6 86906450 86906486 -62610551 + (CAG)n Simple_repeat Simple_repeat 2 37 0 1 1248 249 33 0 0 chr6 86906521 86906551 -62610486 + (CAG)n Simple_repeat Simple_repeat 1 30 0 1 1248 231 61 0 0 chr6 86906999 86907032 -62610005 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1248 284 323 118 83 chr6 86907037 86907206 -62609831 - B3A SINE B2 -16 182 8 1 1248 326 280 11 21 chr6 86907272 86907379 -62609658 + PB1 SINE Alu 18 124 -3 1 1248 8722 28 0 0 chr6 86907427 86908536 -62608501 - L1Md_T LINE L1 0 6582 5474 1 1248 285 29 0 0 chr6 86909127 86909161 -62607876 + (CAG)n Simple_repeat Simple_repeat 1 34 0 1 1248 2137 160 8 3 chr6 86909611 86909980 -62607057 - ORR1C1 LTR MaLR -7 371 1 1 1248 595 70 10 10 chr6 86910837 86910938 -62606099 - B2_Mm2 SINE B2 0 195 95 1 1248 341 302 73 73 chr6 86911328 86911478 -62605559 + B3A SINE B2 34 183 -15 1 1248 1198 68 0 0 chr6 86911502 86911650 -62605387 + B1_Mus1 SINE Alu 1 148 0 1 1248 29 0 0 0 chr6 86911770 86911799 -62605238 + AT_rich Low_complexity Low_complexity 1 29 0 1 1248 637 227 23 0 chr6 86911799 86911927 -62605110 - B1_Mur1 SINE Alu -8 141 11 1 1248 218 200 0 0 chr6 86913911 86913951 -62603086 + T-rich Low_complexity Low_complexity 1 40 0 1 1248 1217 27 0 7 chr6 86914606 86914753 -62602284 - B1_Mus2 SINE Alu -1 146 1 1 1248 1071 138 157 10 chr6 86916289 86916486 -62600551 + URR1A DNA MER1_type 1 226 0 1 1248 700 206 7 29 chr6 86916528 86916668 -62600369 - B1_Mur2 SINE Alu 0 149 13 1 1248 251 281 26 123 chr6 86916538 86916692 -62600345 - B4 SINE B4 -74 218 80 1 1248 469 242 139 6 chr6 86916875 86917033 -62600004 - B3A SINE B2 -18 180 2 1 1248 813 102 17 0 chr6 86917755 86917873 -62599164 + PB1D9 SINE Alu 1 120 0 1 1248 1690 181 97 36 chr6 86918058 86918420 -62598617 - ORR1C2 LTR MaLR 0 384 1 1 1248 287 25 0 24 chr6 86918577 86918618 -62598419 + (TTG)n Simple_repeat Simple_repeat 2 41 0 1 1248 312 257 109 0 chr6 86918650 86918751 -62598286 + RSINE1 SINE B4 14 125 -40 1 1248 272 315 130 8 chr6 86919333 86919464 -62597573 + RSINE1 SINE B4 2 148 -17 1 1248 372 282 5 58 chr6 86919526 86919714 -62597323 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1 1248 598 231 77 0 chr6 86919775 86919918 -62597119 + RSINE1 SINE B4 8 161 -4 1 1248 265 297 179 43 chr6 86919918 86919936 -62597101 + B3 SINE B2 7 189 -27 1 1248 341 298 91 0 chr6 86919988 86920109 -62596928 - MTE2b LTR MaLR -180 199 68 1 1248 329 289 24 73 chr6 86920313 86920436 -62596601 - PB1D10 SINE Alu 0 117 1 1 1248 510 17 0 0 chr6 86921264 86921323 -62595714 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 1 1248 1103 89 0 0 chr6 86921324 86921482 -62595555 - B2_Mm2 SINE B2 -37 158 1 1 1248 483 289 0 0 chr6 86921591 86921712 -62595325 - ID_B1 SINE B4 -23 201 81 1 1248 191 260 0 0 chr6 86921945 86921995 -62595042 + MIR SINE MIR 30 79 -129 1 1248 481 268 96 60 chr6 86922426 86922593 -62594444 + B3A SINE B2 7 179 -37 1 1248 1922 130 37 20 chr6 86922818 86923171 -62593866 - ORR1B2 LTR MaLR -8 359 1 1 1248 1098 79 7 0 chr6 86924313 86924452 -62592585 + B1_Mm SINE Alu 2 141 -6 1 1248 727 69 10 0 chr6 86925288 86925389 -62591648 - B1_Mus2 SINE Alu 0 147 46 1 1248 258 211 25 62 chr6 86925331 86925412 -62591625 - RLTR25B LTR ERVK -526 502 425 1 1248 439 228 66 7 chr6 86925412 86925549 -62591488 - L1MB3 LINE L1 -242 5941 5797 1 1248 1221 54 0 0 chr6 86925558 86925705 -62591332 + B1_Mus2 SINE Alu 1 147 0 1 1248 415 250 2 48 chr6 86925858 86926002 -62591035 - L1MB3 LINE L1 -557 5627 5495 1 1248 228 134 28 69 chr6 86926381 86926442 -62590595 + T-rich Low_complexity Low_complexity 11 70 0 1 1248 358 291 36 9 chr6 86926442 86926553 -62590484 - PB1D10 SINE Alu -1 116 3 1 1248 1204 217 93 45 chr6 86926768 86927121 -62589916 - ORR1D2 LTR MaLR 0 370 1 1 1248 400 241 80 9 chr6 86927219 86927332 -62589705 - B1F2 SINE Alu -7 142 22 1 1248 978 122 7 7 chr6 86927715 86927863 -62589174 - B1_Mur4 SINE Alu -1 149 2 1 1248 269 247 227 0 chr6 86927883 86927980 -62589057 - RSINE1 SINE B4 -44 121 3 1 1248 222 37 0 0 chr6 86928453 86928480 -62588557 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 1 1248 1351 76 41 0 chr6 86929602 86929773 -62587264 + B2_Mm2 SINE B2 2 179 -16 1 1248 576 0 0 0 chr6 86929773 86929837 -62587200 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 1 1248 522 195 109 66 chr6 86929894 86930031 -62587006 + B1_Mur2 SINE Alu 2 144 -5 1 1248 529 147 78 10 chr6 86930090 86930193 -62586844 - B3 SINE B2 -86 130 21 1 1248 232 237 0 0 chr6 86930217 86930276 -62586761 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1 1248 529 278 125 7 chr6 86930286 86930438 -62586599 + ID_B1 SINE B4 1 170 -54 1 1248 352 350 69 9 chr6 86930468 86930684 -62586353 + L1ME1 LINE L1 5932 6160 -19 1 1248 819 152 38 0 chr6 86930808 86930966 -62586071 - B2_Mm2 SINE B2 0 195 32 1 1248 560 248 22 8 chr6 86930998 86931132 -62585905 - RSINE1 SINE B4 -29 136 1 1 1248 447 210 9 29 chr6 86932136 86932251 -62584786 - B1F SINE Alu -7 113 1 1 1248 301 183 53 53 chr6 86932893 86932968 -62584069 + ID4_ SINE ID 5 79 -4 1 1248 199 286 127 0 chr6 86934125 86934188 -62582849 - L4 LINE RTE -702 1327 1257 1 1248 540 221 98 8 chr6 86934217 86934349 -62582688 + B1_Mur4 SINE Alu 1 144 -6 1 1248 4406 70 87 10 chr6 86934446 86935070 -62581967 + L1_Mus4 LINE L1 5962 6633 -3 1 1248 364 250 36 20 chr6 86935516 86935634 -62581403 + PB1D9 SINE Alu 4 119 -1 1 1248 659 232 49 0 chr6 86943558 86943700 -62573337 - B1_Mur1 SINE Alu 0 149 1 1 1248 533 224 0 45 chr6 86947923 86948035 -62569002 + B1F SINE Alu 1 107 -42 1 1248 249 318 84 0 chr6 86948610 86948717 -62568320 + PB1D10 SINE Alu 1 116 -1 1 1248 660 148 65 0 chr6 86948942 86949050 -62567987 + B1_Mur1 SINE Alu 22 136 -13 1 1248 506 250 10 0 chr6 86949426 86949530 -62567507 + PB1 SINE Alu 12 116 -11 1 1248 251 315 72 58 chr6 86949530 86949557 -62567480 + B4A SINE B4 113 227 -65 1 1248 450 94 0 0 chr6 86950746 86950810 -62566227 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1248 888 71 167 0 chr6 86951948 86952074 -62564963 + B1_Mus1 SINE Alu 2 148 0 1 1248 241 167 0 45 chr6 86952082 86952126 -62564911 + PB1D10 SINE Alu 65 106 -11 1 1248 222 37 0 0 chr6 86952126 86952153 -62564884 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1248 240 258 0 70 chr6 86952399 86952470 -62564567 + tRNA-Ala-GCA tRNA tRNA 8 73 -2 1 1248 194 303 24 73 chr6 86952846 86952928 -62564109 + L3 LINE CR1 1241 1318 -3171 1 1248 505 176 108 27 chr6 86953645 86953756 -62563281 - PB1D9 SINE Alu 0 120 1 1 1248 365 239 50 50 chr6 86953790 86953909 -62563128 + PB1D9 SINE Alu 1 119 -1 1 1248 1836 208 41 43 chr6 86954166 86954648 -62562389 + RLTR12B LTR ERVK 1 528 0 1 1248 701 280 23 55 chr6 86954789 86954908 -62562129 + B3 SINE B2 1 119 -97 1 1248 3015 47 37 47 chr6 86954908 86955310 -62561727 + MTB LTR MaLR 1 398 -2 1 1248 701 280 23 55 chr6 86955310 86955409 -62561628 + B3 SINE B2 120 212 -4 1 1248 405 0 0 0 chr6 86955486 86955531 -62561506 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1248 529 187 0 11 chr6 86955596 86955688 -62561349 + RLTR33 LTR ERVK 175 265 -413 1 1248 1056 208 61 5 chr6 86955692 86955905 -62561132 + RLTR33 LTR ERVK 367 591 -87 1 1248 319 312 163 12 chr6 86956078 86956250 -62560787 - B4A SINE B4 -64 228 31 1 1248 3711 102 53 28 chr6 86956383 86956951 -62560086 - MT2B LTR ERVL 0 601 20 1 1248 297 262 129 12 chr6 86957001 86957086 -62559951 - B4A SINE B4 -148 144 50 1 1248 380 270 210 31 chr6 86957116 86957311 -62559726 + L1MC4a LINE L1 6755 6984 -898 1 1248 386 154 6 0 chr6 86957341 86957411 -62559626 + B1_Mur3 SINE Alu 5 77 -50 1 1248 3922 167 167 8 chr6 86957422 86958273 -62558764 + Lx7 LINE L1 6050 7035 -661 1 1248 277 0 0 24 chr6 86958424 86958465 -62558572 - B2_Mm2 SINE B2 -19 176 137 1 1248 337 129 0 36 chr6 86958454 86958521 -62558516 - B2_Mm2 SINE B2 -107 109 47 1 1248 1092 139 0 0 chr6 86958591 86958757 -62558280 - B2_Mm2 SINE B2 -23 172 7 1 1248 434 245 0 10 chr6 86958764 86958863 -62558174 + Lx7 LINE L1 7247 7344 -352 1 1248 1356 191 67 48 chr6 86959000 86959042 -62557995 + Lx7 LINE L1 7360 7400 -296 1 1248 3268 65 7 0 chr6 86959042 86959460 -62557577 + BGLII LTR ERVK 1 421 0 1 1248 1356 191 67 48 chr6 86959460 86959748 -62557289 + Lx7 LINE L1 7401 7696 0 1 1248 346 296 0 12 chr6 86960361 86960443 -62556594 + PB1D10 SINE Alu 20 100 -17 1 1248 233 158 0 26 chr6 86960725 86960764 -62556273 - MIRb SINE MIR 0 268 231 1 1248 1178 43 0 0 chr6 86961056 86961196 -62555841 - B1_Mus2 SINE Alu -7 140 1 1 1248 388 131 28 28 chr6 86961424 86961495 -62555542 + PB1D9 SINE Alu 49 119 -1 1 1248 280 173 39 0 chr6 86962043 86962095 -62554942 - ID SINE ID -168 56 3 1 1248 779 157 20 7 chr6 86962245 86962393 -62554644 + B1_Mur4 SINE Alu 1 150 0 1 1248 814 204 182 0 chr6 86962572 86962753 -62554284 - B3 SINE B2 -2 214 1 1 1248 635 278 6 6 chr6 86963065 86963228 -62553809 - RSINE1 SINE B4 0 165 3 1 1248 210 37 0 0 chr6 86964081 86964108 -62552929 + (ATTG)n Simple_repeat Simple_repeat 1 27 0 1 1248 790 204 80 0 chr6 86964113 86964314 -62552723 - Lx9 LINE L1 -8 7636 7420 1 1248 951 150 7 0 chr6 86964840 86964987 -62552050 + B1_Mur1 SINE Alu 1 148 -1 1 1248 491 270 18 0 chr6 86965230 86965341 -62551696 + B3 SINE B2 1 113 -103 1 1248 239 264 12 186 chr6 86965326 86965498 -62551539 + B2_Mm2 SINE B2 54 195 0 1 1248 45 0 0 0 chr6 86965860 86965905 -62551132 + AT_rich Low_complexity Low_complexity 1 45 0 1 1248 422 269 0 15 chr6 86965979 86966111 -62550926 + (TG)n Simple_repeat Simple_repeat 1 130 0 1 1248 260 268 0 14 chr6 86966175 86966247 -62550790 - B4A SINE B4 -218 74 4 1 1248 303 309 78 23 chr6 86966247 86966358 -62550679 - B1_Mus2 SINE Alu -29 118 1 1 1248 468 250 58 0 chr6 86966255 86966359 -62550678 - ID_B1 SINE B4 -34 190 81 1 1248 251 218 36 18 chr6 86966677 86966733 -62550304 - tRNA-Ala-GCY_ tRNA tRNA -16 59 3 1 1248 383 257 268 14 chr6 86967043 86967185 -62549852 + B3A SINE B2 21 198 0 1 1248 303 260 82 0 chr6 86967183 86967256 -62549781 - ID_B1 SINE B4 -65 159 81 1 1248 734 111 22 8 chr6 86967442 86967580 -62549457 + B1_Mur4 SINE Alu 3 149 -1 1 1248 1320 70 5 26 chr6 86968177 86968197 -62548840 - B2_Mm2 SINE B2 -8 187 170 1 1248 183 42 0 0 chr6 86968197 86968221 -62548816 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1 1248 1320 70 5 26 chr6 86968221 86968390 -62548647 - B2_Mm2 SINE B2 -26 169 2 1 1248 341 298 32 0 chr6 86968395 86968489 -62548548 - PB1D10 SINE Alu 0 117 21 1 1248 365 272 68 0 chr6 86968558 86968661 -62548376 + PB1D9 SINE Alu 1 110 -10 1 1248 183 42 0 0 chr6 86968668 86968692 -62548345 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 1 1248 257 216 157 11 chr6 86968871 86968960 -62548077 + L2c LINE L2 3286 3387 0 1 1248 306 244 50 55 chr6 86969468 86969609 -62547428 - PB1D10 SINE Alu -5 144 6 1 1248 887 231 64 0 chr6 86969677 86969880 -62547157 + B3 SINE B2 1 216 0 1 1248 24 67 0 0 chr6 86970092 86970137 -62546900 + AT_rich Low_complexity Low_complexity 1 45 0 1 1248 640 211 85 39 chr6 86970150 86970303 -62546734 - RSINE1 SINE B4 -4 161 2 1 1248 611 203 35 48 chr6 86970493 86970638 -62546399 + B1_Mur2 SINE Alu 7 149 0 1 1248 366 294 145 59 chr6 86970994 86971283 -62545754 - Lx8 LINE L1 -17 7456 7143 1 1248 366 80 0 0 chr6 86971290 86971340 -62545697 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1248 687 165 12 18 chr6 86971342 86971483 -62545554 - B3 SINE B2 -50 148 2 1 1248 1741 243 122 33 chr6 86971483 86972084 -62544953 - Lx8 LINE L1 -470 7003 6350 1 1248 27 49 0 0 chr6 86972199 86972240 -62544797 + AT_rich Low_complexity Low_complexity 1 41 0 1 1248 399 202 110 46 chr6 86972912 86973021 -62544016 - B1_Mur1 SINE Alu 0 149 34 1 1248 381 248 66 9 chr6 86973517 86973623 -62543414 + PB1D9 SINE Alu 1 112 -8 1 1248 1160 88 25 91 chr6 86973712 86973749 -62543288 - B2_Mm2 SINE B2 -8 187 164 1 1248 1485 93 32 9 chr6 86973749 86973967 -62543070 + L1Md_F2 LINE L1 6360 6582 0 1 1248 1160 88 25 91 chr6 86973967 86974128 -62542909 - B2_Mm2 SINE B2 -32 163 2 1 1248 1106 107 7 0 chr6 86974216 86974365 -62542672 + B1_Mur4 SINE Alu 1 150 0 1 1248 302 269 116 34 chr6 86974413 86974559 -62542478 + L1MEg LINE L1 786 943 -5141 1 1248 307 104 0 0 chr6 86975226 86975274 -62541763 - B1_Mm SINE Alu 0 147 100 1 1248 395 294 24 0 chr6 86975278 86975363 -62541674 + B4 SINE B4 196 282 -10 1 1248 494 256 132 0 chr6 86975871 86975992 -62541045 - ID_B1 SINE B4 -9 215 79 1 1248 424 183 287 23 chr6 86976044 86976070 -62540967 - RSINE1 SINE B4 -1 164 127 1 1248 300 53 0 0 chr6 86976070 86976108 -62540929 + (CG)n Simple_repeat Simple_repeat 2 39 0 1 1248 424 183 287 23 chr6 86976108 86976210 -62540827 - RSINE1 SINE B4 -39 126 2 1 1248 438 264 160 91 chr6 86976212 86976387 -62540650 - ID_B1 SINE B4 0 224 38 1 1248 228 306 35 35 chr6 86976960 86977075 -62539962 - PB1 SINE Alu -8 119 5 1 1248 21 82 0 0 chr6 86977380 86977429 -62539608 + AT_rich Low_complexity Low_complexity 1 49 0 1 1248 554 243 8 9 chr6 86977462 86977578 -62539459 - B1_Mur3 SINE Alu -21 128 5 1 1248 335 293 0 12 chr6 86977710 86977793 -62539244 - ID_B1 SINE B4 0 224 143 1 1248 1225 41 7 0 chr6 86977802 86977947 -62539090 - B1_Mus1 SINE Alu -1 147 2 1 1248 306 288 46 126 chr6 86977947 86978005 -62539032 - B1F SINE Alu -83 66 11 1 1248 1411 69 21 11 chr6 86978665 86978856 -62538181 + B2_Mm2 SINE B2 1 193 -2 1 1248 325 231 63 27 chr6 86979258 86979369 -62537668 + PB1D10 SINE Alu 1 115 -2 1 1248 270 229 180 0 chr6 86979497 86979558 -62537479 + PB1D10 SINE Alu 21 92 -25 1 1248 306 0 0 0 chr6 86979595 86979629 -62537408 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1248 1387 123 5 0 chr6 86979953 86980156 -62536881 + RMER19B LTR ERVK 1 204 -698 1 1248 1469 156 30 0 chr6 86980157 86980394 -62536643 + RMER19B LTR ERVK 659 902 0 1 1248 1744 118 29 7 chr6 86980407 86980680 -62536357 - ORR1A4 LTR MaLR -8 321 43 1 1248 438 306 109 95 chr6 86980680 86980954 -62536083 + RLTR26 LTR ERVK 1 278 -364 1 1248 420 245 136 8 chr6 86980979 86981134 -62535903 - RMER17C LTR ERVK -268 142 3 1 1248 341 213 122 33 chr6 86981174 86981311 -62535726 - RLTR13D5 LTR ERVK -50 973 704 1 1248 1098 65 7 0 chr6 86981553 86981691 -62535346 + B1_Mus1 SINE Alu 1 139 -9 1 1248 21 57 0 0 chr6 86981784 86981819 -62535218 + AT_rich Low_complexity Low_complexity 1 35 0 1 1248 1571 209 99 67 chr6 86982238 86982882 -62534155 - RMER6D LTR ERVK 0 756 2 1 1248 766 40 99 0 chr6 86983255 86983356 -62533681 + B1_Mus1 SINE Alu 37 147 -1 1 1248 1476 54 38 0 chr6 86983476 86983662 -62533375 - B2_Mm2 SINE B2 -1 194 2 1 1248 261 0 0 0 chr6 86983692 86983721 -62533316 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1248 717 260 178 24 chr6 86983815 86984107 -62532930 - MLT2D LTR ERVL -77 337 1 1 1248 2327 256 130 74 chr6 86984107 86985295 -62531742 - ERVL-int LTR ERVL 0 5757 4504 1 1248 1280 263 7 44 chr6 86985426 86985612 -62531425 - BGLII_B LTR ERVK -27 414 237 1 1248 1535 68 16 0 chr6 86985612 86985804 -62531233 - B2_Mm2 SINE B2 0 195 1 1 1248 1280 263 7 44 chr6 86985804 86986047 -62530990 - BGLII_B LTR ERVK -205 236 1 1 1248 943 297 79 3 chr6 86986072 86986427 -62530610 - ERVL-int LTR ERVL -1500 4214 3833 1 1248 231 366 0 31 chr6 86986430 86986526 -62530511 - MLT1J-int LTR MaLR -450 937 845 1 1248 393 297 118 21 chr6 86986533 86986719 -62530318 - ERVL-int LTR ERVL -2049 3665 3462 1 1248 670 162 338 0 chr6 86986872 86987032 -62530005 + B3 SINE B2 3 216 0 1 1248 1289 175 121 82 chr6 86987045 86987375 -62529662 + ORR1D1 LTR MaLR 32 374 0 1 1248 1431 83 0 15 chr6 86987396 86987592 -62529445 + B2_Mm2 SINE B2 1 193 -2 1 1248 670 264 41 32 chr6 86987640 86987859 -62529178 - ID_B1 SINE B4 -1 223 3 1 1248 258 32 0 0 chr6 86988731 86988762 -62528275 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1248 642 299 9 60 chr6 86988790 86988838 -62528199 - B3 SINE B2 -9 207 162 1 1248 468 0 0 0 chr6 86988838 86988890 -62528147 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1248 686 276 7 14 chr6 86988890 86988951 -62528086 - B3A SINE B2 -55 161 107 1 1248 2757 157 123 61 chr6 86988951 86989526 -62527511 - RMER19C LTR ERVK 0 611 1 1 1248 686 272 6 6 chr6 86989526 86989632 -62527405 - B3A SINE B2 -90 108 2 1 1248 260 264 149 0 chr6 86989638 86989725 -62527312 - ID_B1 SINE B4 -6 218 119 1 1248 192 163 0 0 chr6 86990009 86990052 -62526985 + C-rich Low_complexity Low_complexity 1 43 0 1 1248 2322 163 34 19 chr6 86990447 86990859 -62526178 + MTC LTR MaLR 4 421 0 1 1248 1235 0 0 0 chr6 86991797 86991932 -62525105 + B1_Mus2 SINE Alu 1 135 -12 1 1248 219 45 43 22 chr6 86991933 86991979 -62525058 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1248 31 26 0 0 chr6 86992801 86992839 -62524198 + GC_rich Low_complexity Low_complexity 1 38 0 1 1248 496 250 35 0 chr6 86993601 86993717 -62523320 - PB1D7 SINE Alu 0 120 1 1 1248 618 175 98 45 chr6 86994044 86994176 -62522861 + B1_Mur4 SINE Alu 1 139 -11 1 1248 349 288 72 0 chr6 86994348 86994459 -62522578 - PB1D7 SINE Alu -1 119 1 1 1248 657 248 32 13 chr6 86994823 86994978 -62522059 - ID_B1 SINE B4 -1 223 66 1 1248 292 157 16 29 chr6 86995232 86995296 -62521741 - B1_Mus2 SINE Alu 0 149 92 1 1248 28 0 0 0 chr6 86995381 86995409 -62521628 + AT_rich Low_complexity Low_complexity 1 28 0 1 1248 1083 75 0 20 chr6 86995509 86995659 -62521378 + B1_Mus2 SINE Alu 1 147 0 1 1248 423 0 0 0 chr6 86995899 86995946 -62521091 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1248 739 227 26 26 chr6 86996409 86996563 -62520474 - B3 SINE B2 -61 155 2 1 1248 549 233 6 17 chr6 86997069 86997244 -62519793 + CT-rich Low_complexity Low_complexity 3 175 0 1 1248 819 131 98 15 chr6 86997268 86997400 -62519637 - B1_Mus1 SINE Alu -5 143 1 1 1248 295 292 38 87 chr6 86997528 86997712 -62519325 - Kanga1 DNA Tc2 -2 1743 1569 1 1248 3398 119 76 30 chr6 86997687 86998252 -62518785 - MT2B LTR ERVL -10 591 1 1 1248 418 246 191 0 chr6 86998612 86998738 -62518299 - B3 SINE B2 -1 215 66 1 1248 215 182 0 0 chr6 86998731 86998764 -62518273 + PB1D9 SINE Alu 80 112 -8 1 1248 1231 55 0 0 chr6 86999005 86999151 -62517886 + B1_Mm SINE Alu 2 147 0 1 1248 628 277 108 11 chr6 86999206 86999510 -62517527 + L1MA5 LINE L1 5670 6008 -283 1 1248 541 236 242 0 chr6 86999526 86999683 -62517354 - Lx8 LINE L1 -213 7260 7066 1 1248 1682 140 140 0 chr6 86999686 87000000 -62517037 + RMER4A LTR ERVK 1 358 -108 1 1248 572 140 0 10 chr6 87000000 87000101 -62516936 + RMER4A LTR ERVK 359 458 -8 1 1248 29 0 0 0 chr6 87000211 87000240 -62516797 + AT_rich Low_complexity Low_complexity 1 29 0 2 1248 1282 27 0 0 chr6 87000655 87000802 -62516235 + B1_Mus2 SINE Alu 1 147 0 3 1248 186 43 0 0 chr6 87000802 87000825 -62516212 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1248 718 239 26 53 chr6 87001268 87001458 -62515579 + ID_B1 SINE B4 39 223 -1 5 1248 1090 77 28 0 chr6 87001487 87001630 -62515407 + B1_Mus1 SINE Alu 2 148 0 6 1248 261 75 0 0 chr6 87001630 87001670 -62515367 + (A)n Simple_repeat Simple_repeat 1 40 0 7 1248 391 211 77 0 chr6 87001759 87001863 -62515174 - B3A SINE B2 -84 114 3 8 1248 706 264 81 16 chr6 87001955 87002201 -62514836 - MER68 LTR ERVL -31 532 271 9 1248 386 252 68 0 chr6 87002739 87002842 -62514195 - PB1D10 SINE Alu -7 110 1 1 1248 272 320 13 0 chr6 87003507 87003585 -62513452 - ID4_ SINE ID -1 82 4 1 1248 633 231 112 9 chr6 87004127 87004350 -62512687 + Tigger7 DNA MER2_type 302 547 -1944 1 1248 369 0 0 0 chr6 87004357 87004398 -62512639 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1248 243 320 26 0 chr6 87004439 87004517 -62512520 + Tigger7 DNA MER2_type 2405 2484 -7 1 1248 876 157 22 0 chr6 87005150 87005284 -62511753 - B1_Mur1 SINE Alu -10 139 3 1 1248 321 242 0 0 chr6 87005890 87005965 -62511072 + PB1D10 SINE Alu 40 114 -6 1 1248 232 146 21 0 chr6 87005972 87006020 -62511017 + ID4_ SINE ID 22 70 -13 1 1248 781 148 278 0 chr6 87006376 87006545 -62510492 - B3 SINE B2 0 216 1 1 1248 201 169 81 35 chr6 87006915 87007001 -62510036 + (TTAA)n Simple_repeat Simple_repeat 3 92 0 1 1248 335 280 43 50 chr6 87007077 87007216 -62509821 + RSINE1 SINE B4 4 141 -24 1 1248 646 243 75 7 chr6 87007327 87007520 -62509517 + B3 SINE B2 1 195 0 2 1248 22 56 0 0 chr6 87007555 87007591 -62509446 + AT_rich Low_complexity Low_complexity 1 36 0 2 1248 520 333 32 39 chr6 87007799 87008083 -62508954 + B4A SINE B4 5 286 -6 2 1248 183 42 0 0 chr6 87008307 87008331 -62508706 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1248 286 272 111 0 chr6 87008372 87008453 -62508584 - B4A SINE B4 -201 91 2 2 1248 390 286 98 25 chr6 87008676 87008798 -62508239 + RSINE1 SINE B4 8 138 -27 2 1248 1046 118 42 31 chr6 87009823 87010016 -62507021 + B2_Mm2 SINE B2 1 195 0 2 1248 21 82 0 0 chr6 87011209 87011258 -62505779 + AT_rich Low_complexity Low_complexity 1 49 0 2 1248 318 230 0 63 chr6 87011305 87011384 -62505653 - ID4_ SINE ID -9 74 1 2 1248 29 28 0 0 chr6 87011402 87011438 -62505599 + AT_rich Low_complexity Low_complexity 1 36 0 2 1248 672 216 65 70 chr6 87011438 87011637 -62505400 - B3A SINE B2 0 198 1 3 1248 321 281 107 0 chr6 87011672 87011793 -62505244 - ID_B1 SINE B4 -10 214 81 3 1248 1020 90 0 0 chr6 87012214 87012347 -62504690 + B1_Mus1 SINE Alu 3 135 -13 3 1248 396 0 0 0 chr6 87012347 87012391 -62504646 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 3 1248 289 244 144 0 chr6 87012843 87012933 -62504104 - PB1D10 SINE Alu 0 117 15 3 1248 342 235 37 0 chr6 87013061 87013142 -62503895 - RSINE1 SINE B4 -80 85 2 3 1248 24 32 0 0 chr6 87013215 87013246 -62503791 + AT_rich Low_complexity Low_complexity 1 31 0 3 1248 733 194 55 50 chr6 87013293 87013494 -62503543 - B3 SINE B2 0 216 15 3 1248 4434 139 31 15 chr6 87014639 87015383 -62501654 - RMER6A LTR ERVK 0 756 1 3 1248 349 48 0 61 chr6 87015546 87015612 -62501425 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 3 1248 1190 62 0 0 chr6 87015613 87015759 -62501278 - B1_Mus2 SINE Alu 0 147 2 4 1248 187 273 83 41 chr6 87015998 87016143 -62500894 - L2 LINE L2 -619 2800 2650 4 1248 1650 42 0 0 chr6 87016340 87016532 -62500505 + B2_Mm1a SINE B2 2 193 0 4 1248 267 289 75 50 chr6 87017054 87017174 -62499863 + MIR SINE MIR 107 229 -33 4 1248 25 0 0 0 chr6 87017648 87017673 -62499364 + AT_rich Low_complexity Low_complexity 1 25 0 4 1248 279 271 103 0 chr6 87017921 87018076 -62498961 + L1MB3 LINE L1 5943 6113 -70 4 1248 761 249 53 26 chr6 87018123 87018313 -62498724 - B3 SINE B2 -21 195 1 4 1248 27 73 0 0 chr6 87018523 87018578 -62498459 + AT_rich Low_complexity Low_complexity 1 55 0 4 1248 328 252 28 75 chr6 87019777 87019884 -62497153 - B1_Mur1 SINE Alu -1 148 47 4 1248 770 272 87 54 chr6 87020795 87021036 -62496001 - B4A SINE B4 -3 289 41 4 1248 492 229 86 45 chr6 87021279 87021499 -62495538 - RLTR40 LTR ERVK -39 778 550 5 1248 1297 242 54 30 chr6 87021506 87021911 -62495126 - RLTR40 LTR ERVK -402 415 1 5 1248 198 0 0 0 chr6 87022030 87022052 -62494985 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1248 890 230 55 52 chr6 87022097 87022368 -62494669 - B4 SINE B4 -18 274 3 5 1248 438 204 93 0 chr6 87022470 87022578 -62494459 - RSINE1 SINE B4 -40 125 8 5 1248 964 190 73 20 chr6 87022625 87022829 -62494208 - B3 SINE B2 -1 215 1 5 1248 353 239 15 52 chr6 87022864 87022971 -62494066 - PB1 SINE Alu -2 125 17 5 1248 433 108 43 98 chr6 87023783 87023875 -62493162 - B1_Mur4 SINE Alu -17 133 47 5 1248 316 235 16 57 chr6 87024951 87025073 -62491964 + CT-rich Low_complexity Low_complexity 2 118 0 5 1248 513 32 0 0 chr6 87025076 87025139 -62491898 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1248 262 250 39 13 chr6 87025140 87025217 -62491820 - B3A SINE B2 -75 123 45 5 1248 273 330 35 35 chr6 87025811 87025828 -62491209 + ID_B1 SINE B4 77 192 -32 6 1248 390 283 30 0 chr6 87025828 87025927 -62491110 + B1F SINE Alu 13 114 -35 6 1248 217 232 28 42 chr6 87026078 87026150 -62490887 - ID4 SINE ID 0 83 13 6 1248 954 61 121 8 chr6 87026457 87026589 -62490448 + B1_Mus2 SINE Alu 1 147 0 6 1248 754 171 20 14 chr6 87026783 87026931 -62490106 - B1_Mur1 SINE Alu 0 149 1 6 1248 408 236 133 56 chr6 87027309 87027474 -62489563 + B4A SINE B4 108 282 -10 6 1248 980 108 63 0 chr6 87027596 87027754 -62489283 - B2_Mm2 SINE B2 -26 169 2 6 1248 464 272 7 81 chr6 87029219 87029355 -62487682 + RSINE1 SINE B4 8 133 -32 6 1248 21 36 0 0 chr6 87029383 87029411 -62487626 + AT_rich Low_complexity Low_complexity 1 28 0 6 1248 412 309 49 0 chr6 87030778 87030901 -62486136 - ID_B1 SINE B4 -7 217 89 6 1248 649 270 6 35 chr6 87030995 87031164 -62485873 + RSINE1 SINE B4 2 165 0 7 1248 301 22 43 0 chr6 87031212 87031258 -62485779 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 7 1248 1013 62 0 37 chr6 87031263 87031398 -62485639 - B1_Mus2 SINE Alu -16 131 2 7 1248 377 281 121 67 chr6 87031494 87031740 -62485297 + B4 SINE B4 9 282 -10 7 19 275 324 157 0 chr6 87031795 87031897 -62485140 + PB1D7 SINE Alu 1 118 -2 7 1249 833 204 204 0 chr6 87032180 87032352 -62484685 + B3 SINE B2 1 207 -9 7 1249 204 217 0 0 chr6 87032606 87032652 -62484385 + (TCTG)n Simple_repeat Simple_repeat 3 48 0 7 1249 307 252 115 23 chr6 87032661 87032683 -62484354 - L1_Rod LINE L1 -612 5235 5215 7 1249 774 236 114 10 chr6 87032683 87032884 -62484153 - ID_B1 SINE B4 0 224 3 7 1249 307 252 115 23 chr6 87032884 87032991 -62484046 - L1_Rod LINE L1 -633 5214 5094 7 1249 299 239 15 0 chr6 87032991 87033058 -62483979 - U4 snRNA snRNA -77 68 1 7 1249 393 336 83 61 chr6 87033066 87033557 -62483480 - L1M2 LINE L1 -988 5155 4654 8 1249 1176 143 107 10 chr6 87033574 87033779 -62483258 - URR1B DNA MER1_type 0 225 1 8 1249 1062 236 5 0 chr6 87034035 87034243 -62482794 - B3 SINE B2 -6 210 2 8 1249 296 143 18 0 chr6 87034554 87034610 -62482427 + CT-rich Low_complexity Low_complexity 2 58 0 8 1249 854 264 5 9 chr6 87034643 87034861 -62482176 - ID_B1 SINE B4 -7 217 1 8 1249 231 204 0 0 chr6 87034867 87034921 -62482116 + CT-rich Low_complexity Low_complexity 4 57 0 8 1249 534 233 0 147 chr6 87035534 87035690 -62481347 - RSINE1 SINE B4 0 165 33 8 1249 1162 35 28 7 chr6 87036088 87036232 -62480805 - B1_Mus2 SINE Alu 0 147 1 8 1249 1659 32 5 0 chr6 87036744 87036934 -62480103 - B2_Mm1a SINE B2 -2 191 1 8 1249 202 162 27 0 chr6 87037485 87037522 -62479515 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 8 1249 489 17 0 0 chr6 87037522 87037580 -62479457 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1249 416 260 128 16 chr6 87037580 87037705 -62479332 - RSINE1 SINE B4 -25 140 2 9 1249 784 117 0 0 chr6 87040343 87040463 -62476574 - B1_Mur4 SINE Alu -6 144 25 9 1249 961 124 101 0 chr6 87040502 87040671 -62476366 - Lx2B LINE L1 -12 6988 6803 9 1249 1451 75 16 0 chr6 87043234 87043420 -62473617 - B2_Mm2 SINE B2 -5 190 2 9 1249 711 199 51 56 chr6 87044400 87044597 -62472440 + B3A SINE B2 3 198 0 9 1249 512 226 141 35 chr6 87044678 87044848 -62472189 - B3A SINE B2 -10 188 1 9 1249 507 260 41 0 chr6 87045875 87046021 -62471016 - B3A SINE B2 -41 157 6 9 1249 237 132 0 0 chr6 87046164 87046202 -62470835 + (TTA)n Simple_repeat Simple_repeat 2 39 0 9 1249 1158 76 0 0 chr6 87046203 87046347 -62470690 - B1_Mm SINE Alu -2 145 2 9 1249 22 0 0 0 chr6 87046529 87046551 -62470486 + AT_rich Low_complexity Low_complexity 1 22 0 1 1249 298 272 20 39 chr6 87046553 87046706 -62470331 - RLTR15 LTR ERVK -19 340 191 1 1249 265 291 63 53 chr6 87046761 87046968 -62470069 + RLTR15 LTR ERVK 132 340 -19 1 1249 318 50 0 0 chr6 87046975 87047015 -62470022 + (TATG)n Simple_repeat Simple_repeat 1 40 0 1 1249 865 53 153 0 chr6 87047015 87047146 -62469891 - B2_Mm2 SINE B2 -43 152 2 1 1249 195 100 0 0 chr6 87048608 87048638 -62468399 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1249 2289 82 16 19 chr6 87048645 87048967 -62468070 - L1Md_F2 LINE L1 -3 6579 6259 1 1249 203 152 0 0 chr6 87049347 87049380 -62467657 + CT-rich Low_complexity Low_complexity 1 33 0 1 1249 387 0 0 0 chr6 87052809 87052852 -62464185 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1249 999 144 0 0 chr6 87053819 87053986 -62463051 + (CAGC)n Simple_repeat Simple_repeat 4 170 0 1 1249 291 157 0 0 chr6 87054171 87054222 -62462815 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 1 1249 1908 157 114 5 chr6 87054540 87054918 -62462119 + MTD LTR MaLR 1 419 0 1 1249 14852 67 17 6 chr6 87056003 87058853 -62458184 - L1VL2 LINE L1 -636 2979 94 1 1249 627 296 100 5 chr6 87058962 87059162 -62457875 - ID_B1 SINE B4 -4 220 2 1 1249 1232 116 121 0 chr6 87059417 87059615 -62457422 + URR1A DNA MER1_type 5 226 0 1 1249 441 253 0 0 chr6 87060166 87060253 -62456784 + ID_B1 SINE B4 92 178 -46 1 1249 328 323 0 30 chr6 87060253 87060265 -62456772 + PB1D10 SINE Alu 11 106 -11 1 1249 422 294 32 70 chr6 87060288 87060445 -62456592 - MTD LTR MaLR -261 158 8 1 1249 486 217 0 0 chr6 87060865 87061026 -62456011 + (CAG)n Simple_repeat Simple_repeat 2 162 0 1 1249 204 40 0 0 chr6 87061060 87061085 -62455952 + (CAG)n Simple_repeat Simple_repeat 2 26 0 1 1249 498 167 4 84 chr6 87061101 87061368 -62455669 + (CAG)n Simple_repeat Simple_repeat 1 245 0 1 1249 518 311 0 16 chr6 87061518 87061701 -62455336 + (CAG)n Simple_repeat Simple_repeat 1 180 0 1 1249 519 164 7 28 chr6 87061848 87061992 -62455045 + (CAG)n Simple_repeat Simple_repeat 1 141 0 1 1249 690 172 0 0 chr6 87062064 87062221 -62454816 + (CAG)n Simple_repeat Simple_repeat 1 157 0 1 1249 1084 221 14 9 chr6 87062979 87063189 -62453848 - B3 SINE B2 -4 212 2 1 1249 31 0 0 0 chr6 87063239 87063270 -62453767 + AT_rich Low_complexity Low_complexity 1 31 0 1 1249 1656 32 0 0 chr6 87063271 87063457 -62453580 - B2_Mm1a SINE B2 -6 187 2 1 1249 673 250 64 16 chr6 87063457 87063644 -62453393 - B3A SINE B2 -2 196 1 1 1249 655 252 0 0 chr6 87064016 87064151 -62452886 + B1_Mur2 SINE Alu 2 136 -13 1 1249 195 42 0 0 chr6 87064151 87064175 -62452862 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1249 641 258 113 5 chr6 87064429 87064624 -62452413 - ID_B1 SINE B4 -7 217 2 1 1249 1549 72 0 5 chr6 87064804 87064999 -62452038 - B2_Mm2 SINE B2 -1 194 1 1 1249 324 308 10 52 chr6 87065372 87065468 -62451569 - B4A SINE B4 -200 92 1 1 1249 369 0 0 0 chr6 87065587 87065628 -62451409 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1249 264 235 55 176 chr6 87065630 87065795 -62451242 - MT2B2 LTR ERVL -265 319 175 1 1249 685 175 7 87 chr6 87065666 87065804 -62451233 - B1_Mur1 SINE Alu -21 128 2 1 1249 483 227 314 0 chr6 87065808 87065980 -62451057 - B4A SINE B4 -64 228 3 1 1249 189 214 0 0 chr6 87067054 87067096 -62449941 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1249 1069 300 111 95 chr6 87067255 87067392 -62449645 - L1M2 LINE L1 -1992 4151 4023 1 1249 861 279 108 9 chr6 87067392 87067735 -62449302 - MTE2b LTR MaLR -2 377 1 1 1249 1069 301 117 93 chr6 87067735 87068991 -62448046 - L1M2 LINE L1 -2121 4022 2668 1 1249 438 20 0 0 chr6 87069039 87069090 -62447947 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1 1249 311 312 117 28 chr6 87069115 87069261 -62447776 - B3A SINE B2 -12 204 46 1 1249 3246 58 61 25 chr6 87069262 87069738 -62447299 - RLTR44C LTR ERVK -7 495 3 1 1249 231 238 16 16 chr6 87069809 87069873 -62447164 - L1M2 LINE L1 -3642 2501 2438 1 1249 656 263 64 64 chr6 87070502 87070562 -62446475 + ID SINE ID 12 71 -153 1 1249 259 302 53 73 chr6 87070562 87070712 -62446325 + B1_Mus1 SINE Alu 1 147 -1 1 1249 21 0 0 0 chr6 87070749 87070770 -62446267 + AT_rich Low_complexity Low_complexity 1 21 0 1 1249 591 247 62 87 chr6 87070773 87070981 -62446056 - B3 SINE B2 -12 204 2 1 1249 2113 147 122 5 chr6 87071100 87071476 -62445561 - MTC LTR MaLR -1 420 1 1 1249 258 121 30 15 chr6 87071562 87071629 -62445408 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1249 1355 153 23 14 chr6 87071661 87071880 -62445157 + URR1B DNA MER1_type 1 221 -4 1 1249 378 308 0 8 chr6 87071864 87071985 -62445052 - B4A SINE B4 -172 120 1 1 1249 189 107 0 0 chr6 87072484 87072512 -62444525 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1249 332 92 0 30 chr6 87072518 87072585 -62444452 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 1 1249 1076 23 5 54 chr6 87072784 87072969 -62444068 + (TTCTC)n Simple_repeat Simple_repeat 5 180 0 1 1249 224 181 0 77 chr6 87072980 87073025 -62444012 + T-rich Low_complexity Low_complexity 30 72 0 1 1249 800 136 56 28 chr6 87073025 87073169 -62443868 - B1_Mur2 SINE Alu -1 148 1 1 1249 224 181 0 77 chr6 87073169 87073201 -62443836 + T-rich Low_complexity Low_complexity 1 29 0 1 1249 2255 161 73 0 chr6 87074781 87075165 -62441872 + MTC LTR MaLR 1 412 -9 1 1249 402 316 51 40 chr6 87075529 87075704 -62441333 + MER33 DNA MER1_type 1 177 -147 1 1249 573 288 101 134 chr6 87077655 87077743 -62439294 - B4A SINE B4 -6 286 219 1 1249 530 273 37 43 chr6 87077743 87077904 -62439133 - RSINE1 SINE B4 -3 162 3 1 1249 573 288 101 134 chr6 87077904 87078092 -62438945 - B4A SINE B4 -74 218 19 1 1249 489 170 97 70 chr6 87078108 87078222 -62438815 - PB1D9 SINE Alu -1 119 3 1 1249 658 109 0 18 chr6 87079067 87079179 -62437858 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 1 1249 433 238 72 65 chr6 87079223 87079362 -62437675 - B3A SINE B2 -25 173 34 1 1249 1244 243 60 18 chr6 87080151 87080482 -62436555 + ORR1E LTR MaLR 5 349 -10 1 1249 34 55 0 0 chr6 87080482 87080537 -62436500 + AT_rich Low_complexity Low_complexity 1 55 0 1 1249 1404 194 131 59 chr6 87080564 87080954 -62436083 + MTD LTR MaLR 1 418 -1 1 1249 934 200 11 11 chr6 87081207 87081394 -62435643 - B3A SINE B2 -11 187 1 1 1249 5348 134 97 3 chr6 87081874 87082749 -62434288 + RMER17B LTR ERVK 2 958 0 1 1249 231 326 321 44 chr6 87082751 87083021 -62434016 - MTEa LTR MaLR 0 379 34 1 1249 420 37 0 0 chr6 87083021 87083075 -62433962 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1249 309 250 0 38 chr6 87083107 87083186 -62433851 - PB1D10 SINE Alu 0 117 42 1 1249 1122 29 0 7 chr6 87083346 87083483 -62433554 - B1_Mus1 SINE Alu 0 148 13 1 1249 728 251 0 12 chr6 87083591 87083756 -62433281 - RSINE1 SINE B4 0 165 3 1 1249 25 0 0 0 chr6 87083858 87083883 -62433154 + AT_rich Low_complexity Low_complexity 1 25 0 1 1249 305 274 123 75 chr6 87085572 87085718 -62431319 + MER117 DNA MER1_type 2 154 -43 1 1249 301 362 0 0 chr6 87087104 87087281 -62429756 + G-rich Low_complexity Low_complexity 1 177 0 1 1249 258 32 0 0 chr6 87088396 87088427 -62428610 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1249 333 102 0 0 chr6 87088429 87088488 -62428549 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1249 733 216 137 0 chr6 87090542 87090732 -62426305 - B3 SINE B2 0 216 1 1 1249 356 224 15 0 chr6 87090755 87090822 -62426215 + ID4 SINE ID 5 72 -11 1 1249 372 22 0 0 chr6 87090822 87090867 -62426170 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1249 354 370 6 19 chr6 87090907 87091064 -62425973 - MIRb SINE MIR -91 177 23 1 1249 194 302 134 10 chr6 87091201 87091298 -62425739 + L2 LINE L2 2827 2935 -484 1 1249 580 229 128 7 chr6 87091634 87091775 -62425262 - ID_B1 SINE B4 -17 207 50 1 1249 270 309 109 14 chr6 87092666 87092804 -62424233 - Tigger16a DNA Tigger -3 930 780 1 1249 182 146 73 0 chr6 87092982 87093023 -62424014 - L2c LINE L2 -76 3311 3268 1 1249 472 271 178 24 chr6 87094388 87094686 -62422351 - Lx8 LINE L1 -1 7472 7129 1 1249 697 254 131 17 chr6 87095149 87095385 -62421652 - Lx8 LINE L1 -134 7339 7077 1 1249 1199 68 0 0 chr6 87095518 87095666 -62421371 + B1_Mus1 SINE Alu 1 148 0 1 1249 25 0 0 0 chr6 87095804 87095829 -62421208 + AT_rich Low_complexity Low_complexity 1 25 0 1 1249 360 0 0 0 chr6 87095881 87095921 -62421116 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1249 255 202 19 184 chr6 87095921 87096024 -62421013 - B4 SINE B4 -23 269 184 1 1249 306 203 24 129 chr6 87096169 87096254 -62420783 + ORR1B2 LTR MaLR 124 199 -168 1 1249 655 103 26 0 chr6 87096254 87096371 -62420666 + L1_Mus3 LINE L1 6488 6607 -31 1 1249 1096 110 64 6 chr6 87096371 87096544 -62420493 + ORR1B2 LTR MaLR 185 367 0 1 1249 545 161 42 0 chr6 87097698 87097866 -62419171 + GA-rich Low_complexity Low_complexity 2 176 0 1 1249 392 0 21 0 chr6 87099102 87099150 -62417887 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1249 734 249 57 133 chr6 87099155 87099368 -62417669 - B4 SINE B4 0 292 93 1 1249 1005 166 112 5 chr6 87099368 87099556 -62417481 - B3 SINE B2 -8 208 1 1 1249 734 249 57 133 chr6 87099556 87099657 -62417380 - B4 SINE B4 -200 92 3 1 1249 306 106 0 0 chr6 87100488 87100535 -62416502 + (TCC)n Simple_repeat Simple_repeat 2 48 0 1 1249 339 132 0 0 chr6 87101007 87101075 -62415962 + (CAA)n Simple_repeat Simple_repeat 2 69 0 1 1249 847 283 20 9 chr6 87103915 87104175 -62412862 - B4A SINE B4 -10 282 15 1 1249 679 210 166 0 chr6 87105282 87105463 -62411574 - ID_B1 SINE B4 -13 211 1 2 1249 1101 207 25 0 chr6 87106776 87106974 -62410063 + B3 SINE B2 4 206 -10 2 1249 594 288 112 17 chr6 87107311 87107370 -62409667 - B4A SINE B4 -20 272 211 2 1249 1352 89 26 0 chr6 87107370 87107560 -62409477 - B2_Mm2 SINE B2 0 195 1 2 1249 594 288 112 17 chr6 87107560 87107740 -62409297 - B4A SINE B4 -82 210 10 2 1249 374 269 101 9 chr6 87108136 87108245 -62408792 + RSINE1 SINE B4 14 132 -33 2 1249 369 0 0 0 chr6 87108272 87108313 -62408724 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1249 568 257 71 0 chr6 87108958 87109098 -62407939 + RSINE1 SINE B4 3 152 -13 2 1249 983 168 22 9 chr6 87109837 87110048 -62406989 - B3A SINE B2 -2 214 1 2 1249 344 328 69 15 chr6 87111813 87111943 -62405094 + L3 LINE CR1 3156 3292 -1197 2 1249 385 295 14 14 chr6 87112441 87112582 -62404455 + (TATG)n Simple_repeat Simple_repeat 4 144 0 2 1249 727 202 89 9 chr6 87113089 87113264 -62403773 + ID_B1 SINE B4 2 176 -116 2 1249 315 194 194 0 chr6 87113360 87113422 -62403615 + BC1_Mm scRNA scRNA 1 74 -78 2 1249 857 264 66 4 chr6 87114612 87114840 -62402197 - B4A SINE B4 -49 243 2 2 1249 1005 213 40 0 chr6 87117345 87117547 -62399490 - B3 SINE B2 -6 210 1 2 1249 266 149 64 0 chr6 87118474 87118521 -62398516 + MIR SINE MIR 122 171 -91 2 1249 759 22 0 0 chr6 87119251 87119340 -62397697 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 1249 548 300 21 0 chr6 87119350 87119490 -62397547 - B3A SINE B2 -53 145 3 2 1249 348 330 127 41 chr6 87121357 87121695 -62395342 + L2c LINE L2 3021 3387 0 2 1249 202 322 23 55 chr6 87121999 87122127 -62394910 + MIR SINE MIR 30 153 -55 2 1249 477 0 0 0 chr6 87122620 87122673 -62394364 + (CAAAC)n Simple_repeat Simple_repeat 4 56 0 2 1249 659 163 7 0 chr6 87122855 87123002 -62394035 + GA-rich Low_complexity Low_complexity 1 148 0 2 1249 982 159 0 0 chr6 87123692 87123837 -62393200 - B1_Mur2 SINE Alu -2 147 3 2 1249 252 0 0 0 chr6 87123922 87123950 -62393087 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 2 1249 1535 0 0 6 chr6 87124144 87124320 -62392717 + (TTC)n Simple_repeat Simple_repeat 3 177 0 2 1249 980 111 0 7 chr6 87124320 87124474 -62392563 + (TCC)n Simple_repeat Simple_repeat 2 154 0 2 1249 1220 49 0 0 chr6 87124475 87124617 -62392420 - B1_Mus1 SINE Alu -6 142 1 2 1249 362 258 128 29 chr6 87126766 87126938 -62390099 + MER5A DNA MER1_type 1 189 0 2 1249 504 222 198 30 chr6 87127087 87127254 -62389783 + B3A SINE B2 4 198 0 2 1249 31 26 0 0 chr6 87127526 87127564 -62389473 + AT_rich Low_complexity Low_complexity 1 38 0 2 1249 204 270 63 0 chr6 87127747 87127810 -62389227 - L3 LINE CR1 -328 4161 4095 2 1249 812 239 150 0 chr6 87129001 87129227 -62387810 + MTE2b LTR MaLR 58 317 -62 2 1249 816 64 1 0 chr6 87129230 87129330 -62387707 + B2_Mm2 SINE B2 1 100 -93 2 1249 521 181 259 12 chr6 87129330 87129492 -62387545 - B3 SINE B2 -14 202 1 2 1249 680 199 42 7 chr6 87129492 87129533 -62387504 + B2_Mm1a SINE B2 101 146 -47 2 1249 352 94 38 0 chr6 87129497 87129550 -62387487 + MTE2b LTR MaLR 325 379 0 2 1249 213 139 0 0 chr6 87130042 87130085 -62386952 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1249 284 194 15 15 chr6 87132235 87132371 -62384666 + (TG)n Simple_repeat Simple_repeat 2 137 0 2 1249 455 215 0 6 chr6 87132415 87132588 -62384449 + (TG)n Simple_repeat Simple_repeat 2 173 0 2 1249 350 264 134 37 chr6 87132892 87133026 -62384011 + RSINE1 SINE B4 1 147 -18 2 1249 423 0 0 0 chr6 87133185 87133232 -62383805 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1249 229 330 51 10 chr6 87134709 87134807 -62382230 - MER58D DNA MER1_type -4 382 281 2 1249 781 275 82 20 chr6 87134850 87135154 -62381883 + Lx7 LINE L1 7041 7363 -333 2 1249 270 0 0 0 chr6 87135175 87135205 -62381832 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1249 300 279 52 69 chr6 87136226 87136399 -62380638 + MER5A DNA MER1_type 18 187 -2 2 1249 606 241 28 0 chr6 87136262 87136407 -62380630 - MER5A DNA MER1_type -34 155 7 2 1249 221 350 93 46 chr6 87136457 87136565 -62380472 + PB1 SINE Alu 7 119 -8 2 1249 707 200 36 0 chr6 87137370 87137510 -62379527 - B4A SINE B4 -3 289 145 2 1249 223 239 0 0 chr6 87137533 87137579 -62379458 - B4A SINE B4 -245 47 2 2 1249 398 284 110 57 chr6 87139100 87139406 -62377631 + MLT1A1 LTR MaLR 43 390 -18 2 1249 357 254 127 61 chr6 87142383 87142580 -62374457 + ORR1E LTR MaLR 9 218 -141 2 1249 247 293 0 0 chr6 87143103 87143161 -62373876 - RSINE1 SINE B4 -22 143 86 2 1249 22 35 0 0 chr6 87143210 87143239 -62373798 + AT_rich Low_complexity Low_complexity 1 29 0 2 1249 1146 200 24 0 chr6 87143264 87143469 -62373568 - B3 SINE B2 -6 210 1 2 1249 472 336 97 45 chr6 87144153 87144462 -62372575 + MLT1M LTR MaLR 142 466 -206 2 1249 4470 12 0 12 chr6 87144986 87145485 -62371552 - MT2_Mm LTR ERVL 0 493 1 2 1249 305 0 0 0 chr6 87145485 87145523 -62371514 - MERVL-int LTR ERVL 0 5485 5448 2 1249 399 167 46 35 chr6 87145523 87145610 -62371427 - ORR1A3-int LTR MaLR -1323 640 553 2 1249 39465 16 14 0 chr6 87145610 87150897 -62366140 - MERVL-int LTR ERVL -125 5360 1 2 1249 4470 12 0 12 chr6 87150897 87151396 -62365641 - MT2_Mm LTR ERVL 0 493 1 2 1249 1339 188 230 20 chr6 87151491 87151839 -62365198 + MTC LTR MaLR 1 421 0 2 1249 381 267 0 0 chr6 87151954 87152055 -62364982 - PB1D10 SINE Alu -16 101 1 2 1249 810 31 0 0 chr6 87153029 87153126 -62363911 + (GA)n Simple_repeat Simple_repeat 1 97 0 2 1249 233 310 27 91 chr6 87153889 87153999 -62363038 + PB1D10 SINE Alu 3 105 -12 2 1249 238 225 111 14 chr6 87154025 87154097 -62362940 + ID4 SINE ID 2 80 -3 2 1249 1059 237 106 26 chr6 87156257 87156521 -62360516 + B4A SINE B4 6 290 -2 2 1249 261 79 0 0 chr6 87156570 87156591 -62360446 + (CG)n Simple_repeat Simple_repeat 1 21 0 2 1249 225 65 0 0 chr6 87156591 87156622 -62360415 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1249 261 79 0 0 chr6 87156622 87156638 -62360399 + (CG)n Simple_repeat Simple_repeat 1 16 0 2 1249 305 291 42 13 chr6 87157091 87157270 -62359767 + Lx8 LINE L1 5702 5920 -1553 2 1249 854 122 0 7 chr6 87157989 87158129 -62358908 + (TTTTC)n Simple_repeat Simple_repeat 3 141 0 2 1249 1077 76 28 7 chr6 87158130 87158275 -62358762 - B1_Mus1 SINE Alu 0 148 1 2 1249 808 233 6 11 chr6 87158299 87158473 -62358564 - B3 SINE B2 0 216 44 2 1249 266 303 45 0 chr6 87159135 87159224 -62357813 + B1F2 SINE Alu 12 104 -45 2 1249 1518 222 112 17 chr6 87159237 87159613 -62357424 - MTD LTR MaLR -14 405 8 2 1249 717 223 0 0 chr6 87161403 87161524 -62355513 + RSINE1 SINE B4 4 124 -41 2 1249 324 48 0 0 chr6 87161524 87161566 -62355471 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1249 926 238 15 10 chr6 87161671 87161866 -62355171 - B3 SINE B2 -11 205 10 2 1249 220 388 0 0 chr6 87161795 87161875 -62355162 - RSINE1 SINE B4 -84 81 2 2 1249 187 95 0 67 chr6 87162379 87162424 -62354613 + (TATG)n Simple_repeat Simple_repeat 1 42 0 2 1249 585 262 35 0 chr6 87162538 87162679 -62354358 - B1_Mur1 SINE Alu -2 147 2 2 1250 196 244 0 24 chr6 87163901 87163943 -62353094 + MER5B DNA MER1_type 136 176 -2 2 1250 229 284 0 0 chr6 87164236 87164310 -62352727 + G-rich Low_complexity Low_complexity 4 77 0 2 1250 198 0 0 0 chr6 87164479 87164501 -62352536 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1250 274 330 94 1 chr6 87164556 87164700 -62352337 - B4 SINE B4 -85 207 46 2 1250 210 344 0 0 chr6 87164806 87164867 -62352170 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1250 1278 254 74 34 chr6 87165228 87165554 -62351483 - ORR1E LTR MaLR 0 359 21 2 1250 25 0 0 0 chr6 87166705 87166730 -62350307 + AT_rich Low_complexity Low_complexity 1 25 0 2 1250 4224 76 4 7 chr6 87167959 87168515 -62348522 + L1_Mus3 LINE L1 6085 6638 0 2 1250 198 0 0 0 chr6 87168585 87168607 -62348430 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 1250 492 225 12 155 chr6 87168661 87168829 -62348208 - ID_B1 SINE B4 -1 223 80 2 1250 236 281 0 0 chr6 87169167 87169231 -62347806 - MIRb SINE MIR -147 121 58 2 1250 307 233 43 85 chr6 87170699 87170793 -62346244 - PB1D7 SINE Alu 0 120 31 2 1250 2485 119 92 5 chr6 87170931 87171312 -62345725 + MTC LTR MaLR 1 414 -7 2 1250 396 0 0 0 chr6 87172105 87172149 -62344888 + (GGA)n Simple_repeat Simple_repeat 1 44 0 2 1250 2085 170 134 7 chr6 87173636 87174039 -62342998 - Lx5 LINE L1 -611 6439 5986 2 1250 3393 164 25 15 chr6 87174047 87174647 -62342390 + Lx5 LINE L1 6442 7047 -3 2 1250 771 193 21 0 chr6 87177038 87177183 -62339854 - URR1A DNA MER1_type 0 226 79 2 1250 186 43 0 0 chr6 87178056 87178079 -62338958 + (CGGG)n Simple_repeat Simple_repeat 4 26 0 2 1250 586 99 42 24 chr6 87178371 87178537 -62338500 + (TG)n Simple_repeat Simple_repeat 1 169 0 2 1250 216 0 0 0 chr6 87178540 87178564 -62338473 + (TGG)n Simple_repeat Simple_repeat 3 26 0 2 1250 574 258 26 13 chr6 87178564 87178717 -62338320 - RSINE1 SINE B4 0 165 11 2 1250 576 106 0 0 chr6 87179153 87179238 -62337799 + (CA)n Simple_repeat Simple_repeat 1 85 0 2 1250 691 217 39 69 chr6 87179886 87180089 -62336948 - B3A SINE B2 0 198 2 2 1250 317 301 47 27 chr6 87180109 87180342 -62336695 - L1M3 LINE L1 -3038 3108 2872 2 1250 33 0 0 0 chr6 87180485 87180518 -62336519 + AT_rich Low_complexity Low_complexity 1 33 0 2 1250 473 301 44 44 chr6 87180544 87180704 -62336333 - MER104 DNA Tc2 -3 178 19 2 1250 309 357 52 46 chr6 87180815 87181009 -62336028 - L1M3 LINE L1 -3515 2631 2437 2 1250 300 154 0 0 chr6 87181062 87181114 -62335923 + CT-rich Low_complexity Low_complexity 3 54 0 2 1250 231 339 73 31 chr6 87181114 87181306 -62335731 - L1M3 LINE L1 -3774 2372 2173 2 1250 213 39 0 0 chr6 87181753 87181779 -62335258 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1250 205 298 149 28 chr6 87182076 87182183 -62334854 - L3 LINE CR1 -5 4484 4365 3 1250 273 57 0 0 chr6 87183705 87183740 -62333297 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1250 1199 75 0 0 chr6 87183747 87183894 -62333143 - B1_Mm SINE Alu 0 147 1 3 1250 233 353 88 0 chr6 87184036 87184138 -62332899 - MER20 DNA MER1_type -1 218 108 3 1250 455 271 59 0 chr6 87184238 87184356 -62332681 + RSINE1 SINE B4 5 129 -36 3 1250 26 50 0 0 chr6 87184368 87184408 -62332629 + AT_rich Low_complexity Low_complexity 1 40 0 3 1250 506 309 46 0 chr6 87185642 87185794 -62331243 - ID_B1 SINE B4 0 224 66 3 1250 826 260 57 40 chr6 87186533 87186761 -62330276 - B4 SINE B4 -7 285 54 3 1250 229 268 19 93 chr6 87187258 87187365 -62329672 - Charlie1a DNA MER1_type -1286 169 71 3 1250 415 278 0 0 chr6 87187779 87187869 -62329168 - PB1D10 SINE Alu -27 90 1 3 1250 285 371 58 11 chr6 87187895 87188083 -62328954 - MIR SINE MIR -1 261 65 3 1250 188 259 36 18 chr6 87188287 87188342 -62328695 + L2 LINE L2 2792 2847 -572 3 1250 259 306 49 43 chr6 87190194 87190232 -62326805 + L2 LINE L2 1717 1752 -1667 3 1250 1501 126 14 0 chr6 87190232 87190454 -62326583 - URR1B DNA MER1_type 0 225 1 3 1250 259 306 49 43 chr6 87190454 87190579 -62326458 + L2 LINE L2 1753 1881 -1538 3 1250 387 0 0 0 chr6 87191258 87191301 -62325736 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 3 1250 1053 58 0 28 chr6 87191337 87191479 -62325558 - B1_Mus2 SINE Alu 0 147 10 3 1250 227 31 31 0 chr6 87192013 87192045 -62324992 + (TGGGGG)n Simple_repeat Simple_repeat 1 33 0 3 1250 248 341 24 0 chr6 87192187 87192269 -62324768 + MIRb SINE MIR 42 125 -143 3 1250 488 59 0 14 chr6 87192824 87192893 -62324144 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1250 551 285 36 14 chr6 87193430 87193569 -62323468 + B4A SINE B4 19 160 -132 3 1250 369 0 0 0 chr6 87193696 87193737 -62323300 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1250 378 0 0 0 chr6 87193737 87193778 -62323259 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1250 978 251 21 45 chr6 87193779 87194067 -62322970 - B4A SINE B4 -10 282 2 3 1250 218 271 106 0 chr6 87194072 87194157 -62322880 - MIRc SINE MIR -122 146 53 3 1250 675 0 0 0 chr6 87195132 87195207 -62321830 + (TTC)n Simple_repeat Simple_repeat 1 75 0 3 1250 393 22 0 0 chr6 87196875 87196921 -62320116 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1250 468 0 0 0 chr6 87197826 87197878 -62319159 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 1250 333 68 0 0 chr6 87197878 87197921 -62319116 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1250 270 294 0 143 chr6 87197921 87198040 -62318997 - PB1D10 SINE Alu -15 102 1 3 1250 210 260 138 38 chr6 87198040 87198072 -62318965 - ID SINE ID -146 78 39 3 1250 1157 84 0 0 chr6 87200336 87200479 -62316558 + B1_Mm SINE Alu 2 144 -3 3 1250 444 37 0 0 chr6 87200480 87200534 -62316503 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 3 1250 794 126 0 0 chr6 87201442 87201561 -62315476 - URR1B DNA MER1_type 0 225 107 3 1250 267 226 48 0 chr6 87202125 87202187 -62314850 - RSINE1 SINE B4 -57 108 44 3 1250 25 0 0 0 chr6 87202196 87202221 -62314816 + AT_rich Low_complexity Low_complexity 1 25 0 3 1250 272 310 30 30 chr6 87202370 87202503 -62314534 - L1M3 LINE L1 -1101 5039 4907 3 1250 369 291 160 34 chr6 87202548 87202811 -62314226 - L1M5 LINE L1 -1307 4839 4544 3 1250 195 316 102 34 chr6 87202928 87203046 -62313991 - MIR SINE MIR -76 186 61 3 1250 297 0 0 0 chr6 87203220 87203253 -62313784 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 3 1250 333 0 0 0 chr6 87203253 87203289 -62313748 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1250 748 168 17 0 chr6 87203291 87203410 -62313627 - B3A SINE B2 -76 122 2 3 1250 321 228 38 0 chr6 87203796 87203875 -62313162 - Charlie5 DNA MER1_type -2515 109 28 3 1250 225 0 0 0 chr6 87205605 87205630 -62311407 + (CCA)n Simple_repeat Simple_repeat 3 27 0 3 1250 333 0 0 0 chr6 87206727 87206764 -62310273 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3 1250 803 255 83 79 chr6 87206765 87207055 -62309982 - B4 SINE B4 0 292 2 3 1250 256 180 0 0 chr6 87208967 87209017 -62308020 + L1MB7 LINE L1 5383 5432 -742 3 1250 963 306 55 25 chr6 87209004 87209464 -62307573 + L1MB7 LINE L1 5674 6156 -28 3 1250 647 275 116 126 chr6 87209946 87210437 -62306600 + RLTR12B LTR ERVK 12 497 -31 3 1250 676 273 69 62 chr6 87210474 87210838 -62306199 - L1ME1 LINE L1 -233 5946 5581 3 1250 1045 160 22 6 chr6 87210838 87211020 -62306017 + B2_Mm2 SINE B2 2 186 -9 3 1250 676 273 69 62 chr6 87211020 87211077 -62305960 - L1ME1 LINE L1 -599 5580 5523 3 1250 26 74 0 0 chr6 87212403 87212457 -62304580 + AT_rich Low_complexity Low_complexity 1 54 0 3 1250 982 228 18 28 chr6 87213022 87213171 -62303866 - B3 SINE B2 0 216 68 3 1250 2437 89 13 84 chr6 87213171 87213564 -62303473 + RLTR8 LTR ERVK 1 365 0 3 1250 982 228 18 28 chr6 87213564 87213631 -62303406 - B3 SINE B2 -149 67 2 3 1250 396 169 14 0 chr6 87213646 87213717 -62303320 - PB1D10 SINE Alu -15 102 31 3 1250 15839 80 26 1 chr6 87213726 87216161 -62300876 + SRV_MM-int LTR ERVK 1 2662 -3505 3 1250 7501 68 116 1 chr6 87216144 87217174 -62299863 + SRV_MM-int LTR ERVK 5019 6167 0 3 1250 2568 79 30 22 chr6 87217174 87217536 -62299501 + RLTR8 LTR ERVK 1 365 0 3 1250 362 179 75 0 chr6 87217536 87217603 -62299434 - B3A SINE B2 -125 73 2 3 1250 433 235 41 0 chr6 87217618 87217716 -62299321 - PB1D10 SINE Alu -15 102 1 3 1250 323 235 10 0 chr6 87217885 87217983 -62299054 + (TA)n Simple_repeat Simple_repeat 2 100 0 3 1250 197 108 27 0 chr6 87218041 87218078 -62298959 + (TATG)n Simple_repeat Simple_repeat 2 39 0 3 1250 207 297 128 10 chr6 87218334 87218436 -62298601 + L2a LINE L2 3312 3425 -1 3 1250 921 171 53 32 chr6 87218541 87218728 -62298309 + B2_Mm2 SINE B2 2 192 -3 3 1250 238 327 103 0 chr6 87220634 87220741 -62296296 - L4 LINE RTE -193 1836 1719 3 1250 329 242 274 42 chr6 87220992 87221229 -62295808 - B4 SINE B4 0 292 1 3 1250 834 217 95 128 chr6 87223336 87223727 -62293310 + RMER17C LTR ERVK 1 378 -32 3 1250 296 307 28 42 chr6 87223772 87223915 -62293122 + MIRb SINE MIR 91 231 -37 3 1250 204 299 87 108 chr6 87223938 87224133 -62292904 + MIRc SINE MIR 15 205 -63 3 1250 1227 194 30 4 chr6 87224204 87224437 -62292600 + RLTR42 LTR ERVK 1 239 0 3 1250 1138 191 9 23 chr6 87224834 87225048 -62291989 + B3 SINE B2 1 211 -5 3 1250 243 298 138 46 chr6 87225811 87225941 -62291096 + L2b LINE L2 3273 3418 -8 3 1250 243 169 104 30 chr6 87229934 87230001 -62287036 - ID4 SINE ID -11 72 1 3 1250 367 198 93 0 chr6 87230809 87230895 -62286142 + L1MA5 LINE L1 6159 6252 -48 3 1250 478 205 0 0 chr6 87231142 87231225 -62285812 + 5S rRNA rRNA 1 83 -38 3 1250 1262 82 29 0 chr6 87231297 87231468 -62285569 + B2_Mm2 SINE B2 1 176 -19 3 1250 389 211 179 19 chr6 87231922 87232028 -62285009 - RSINE1 SINE B4 -40 125 3 3 1250 189 107 0 0 chr6 87233450 87233478 -62283559 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1250 1146 82 0 0 chr6 87233480 87233627 -62283410 - B1_Mm SINE Alu 0 147 1 3 1250 189 74 0 0 chr6 87234399 87234426 -62282611 - L2b LINE L2 -20 3355 3329 3 1250 424 265 10 10 chr6 87235936 87236035 -62281002 - Lx8 LINE L1 -206 7267 7169 3 1250 746 242 22 33 chr6 87236093 87236277 -62280760 + B3A SINE B2 2 183 -15 3 1250 576 258 86 0 chr6 87236246 87236374 -62280663 + B3 SINE B2 72 210 -6 3 1250 216 0 0 0 chr6 87236615 87236639 -62280398 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1250 438 53 0 0 chr6 87239848 87239905 -62277132 + (CACG)n Simple_repeat Simple_repeat 3 59 0 3 1250 285 315 0 14 chr6 87239965 87240060 -62276977 - MIR SINE MIR -133 135 44 3 1250 315 309 150 40 chr6 87240429 87240783 -62276254 + L2 LINE L2 2608 3000 -419 3 1250 383 250 173 8 chr6 87241473 87241606 -62275431 + L1_Mur3 LINE L1 4706 4860 -1283 3 1250 222 37 0 0 chr6 87241616 87241643 -62275394 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1250 601 279 11 25 chr6 87241676 87241833 -62275204 + B3A SINE B2 46 191 -7 3 1250 664 304 180 7 chr6 87241857 87242706 -62274331 + L1_Mur3 LINE L1 4904 5879 -1 3 1250 315 146 0 0 chr6 87243148 87243203 -62273834 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 3 1250 304 345 34 54 chr6 87244694 87244841 -62272196 - L1M5 LINE L1 -2829 3317 3174 3 1250 273 271 94 34 chr6 87245114 87245263 -62271774 - L1M5 LINE L1 -3757 2389 2232 3 1250 320 311 132 20 chr6 87245285 87245436 -62271601 + MLT1H2 LTR MaLR 26 193 -296 3 1250 1360 181 90 53 chr6 87245522 87245879 -62271158 + MTD LTR MaLR 35 404 -15 3 1250 1704 128 152 0 chr6 87245894 87246176 -62270861 + ORR1A3 LTR MaLR 1 325 -1 3 1250 1181 311 213 18 chr6 87246782 87247388 -62269649 - Tigger7 DNA MER2_type -1690 801 78 3 1250 619 254 265 26 chr6 87247942 87248176 -62268861 + B4 SINE B4 1 290 -2 3 1250 270 132 0 0 chr6 87248720 87248758 -62268279 + tRNA-Arg-CGY_ tRNA tRNA 1 38 -38 3 1250 498 226 0 0 chr6 87251765 87251902 -62265135 + (CA)n Simple_repeat Simple_repeat 2 138 0 3 1250 795 287 14 56 chr6 87252074 87252288 -62264749 + B4A SINE B4 2 206 -86 3 1250 559 110 40 0 chr6 87252288 87252388 -62264649 + (GGGAGA)n Simple_repeat Simple_repeat 3 106 0 3 1250 347 341 91 36 chr6 87253169 87253388 -62263649 + L1M4 LINE L1 3713 3943 -2203 3 1250 263 398 0 0 chr6 87253848 87254024 -62263013 + (CCCCG)n Simple_repeat Simple_repeat 2 177 0 3 1250 234 295 147 50 chr6 87254051 87254269 -62262768 + L1MEf LINE L1 91 329 -5871 4 1250 540 299 139 85 chr6 87254549 87255240 -62261797 + L1MEf LINE L1 589 1316 -4884 4 1250 419 298 143 37 chr6 87255672 87255888 -62261149 - B4 SINE B4 -51 241 3 4 1250 473 320 64 0 chr6 87256510 87256729 -62260308 - SSU-rRNA_Hsa rRNA rRNA -1634 235 3 4 1250 369 295 34 131 chr6 87257271 87257629 -62259408 + MLT1A1 LTR MaLR 45 402 -6 4 1250 1989 150 53 45 chr6 87259774 87259985 -62257052 + ORR1B1 LTR MaLR 6 226 -168 4 1250 1414 64 43 0 chr6 87259985 87260172 -62256865 + B2_Mm2 SINE B2 1 195 0 4 1250 1989 150 53 45 chr6 87260172 87260338 -62256699 + ORR1B1 LTR MaLR 227 386 -8 4 1250 1484 287 142 5 chr6 87260396 87261023 -62256014 - L1_Mur3 LINE L1 -311 5569 4857 4 1250 290 295 34 11 chr6 87261471 87261560 -62255477 + MTEb LTR MaLR 287 377 -2 4 1250 2099 150 20 0 chr6 87262734 87263080 -62253957 + ORR1B2 LTR MaLR 2 354 -13 4 1250 539 66 13 0 chr6 87263653 87263729 -62253308 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 4 1250 345 24 0 0 chr6 87263742 87263784 -62253253 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1250 700 266 37 53 chr6 87263786 87263973 -62253064 - B3A SINE B2 -14 184 1 4 1250 745 257 78 0 chr6 87264008 87264187 -62252850 - B3 SINE B2 0 216 24 4 1250 2223 136 64 51 chr6 87264564 87264953 -62252084 + ORR1B1 LTR MaLR 1 394 0 4 1250 25 65 0 0 chr6 87265010 87265056 -62251981 + AT_rich Low_complexity Low_complexity 1 46 0 4 1250 741 149 12 6 chr6 87267389 87267551 -62249486 + (CA)n Simple_repeat Simple_repeat 2 164 0 4 1250 189 0 0 0 chr6 87267594 87267615 -62249422 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4 1250 507 276 26 7 chr6 87268735 87268888 -62248149 - MER45A DNA Tip100 -19 159 4 4 1250 313 293 110 92 chr6 87268962 87269180 -62247857 - MER58A DNA MER1_type -2 222 1 4 1250 21 0 0 0 chr6 87269215 87269236 -62247801 + AT_rich Low_complexity Low_complexity 1 21 0 4 1250 356 354 101 49 chr6 87270434 87270727 -62246310 - HAL1 LINE L1 -985 1522 1230 4 1250 468 0 0 0 chr6 87270727 87270779 -62246258 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1250 324 0 0 0 chr6 87270779 87270814 -62246223 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1250 356 354 101 49 chr6 87270814 87270905 -62246132 - HAL1 LINE L1 -1278 1229 1118 4 1250 341 279 9 21 chr6 87271128 87271246 -62245791 - PB1D10 SINE Alu -20 129 9 4 1250 213 39 0 0 chr6 87271331 87271357 -62245680 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1250 313 293 90 83 chr6 87273100 87273245 -62243792 - RSINE1 SINE B4 -16 149 4 4 1250 415 293 24 8 chr6 87273824 87273948 -62243089 - MER94 DNA AcHobo -7 127 2 4 1250 306 0 0 0 chr6 87274730 87274764 -62242273 + (CAAAC)n Simple_repeat Simple_repeat 5 38 0 4 1250 234 62 0 0 chr6 87274765 87274797 -62242240 + (CCAA)n Simple_repeat Simple_repeat 1 32 0 4 1250 191 363 37 56 chr6 87275800 87275908 -62241129 + L2c LINE L2 3264 3369 -18 4 1250 285 250 58 68 chr6 87275919 87276022 -62241015 + B1F1 SINE Alu 1 102 -47 4 1250 225 0 0 0 chr6 87276029 87276054 -62240983 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1250 375 105 0 0 chr6 87276054 87276111 -62240926 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 1250 334 336 22 0 chr6 87276252 87276386 -62240651 + (CACCAT)n Simple_repeat Simple_repeat 4 140 0 4 1250 335 269 46 123 chr6 87276396 87276591 -62240446 + HAL1-2a_MD LINE L1 2343 2522 -502 4 1250 334 278 59 58 chr6 87276636 87276811 -62240226 - MIRb SINE MIR -70 198 10 4 1250 22 35 0 0 chr6 87277323 87277352 -62239685 + AT_rich Low_complexity Low_complexity 1 29 0 4 1250 767 236 67 6 chr6 87277375 87277554 -62239483 - B3 SINE B2 -26 190 1 4 1250 274 290 43 11 chr6 87278400 87278494 -62238543 + MLT1I LTR MaLR 62 158 -290 4 1250 286 250 0 35 chr6 87278552 87278610 -62238427 + MLT1I LTR MaLR 353 408 -3 4 1250 235 312 88 0 chr6 87280500 87280580 -62236457 - Tigger16b DNA Tigger -36 301 215 4 1250 1262 44 24 10 chr6 87281988 87282497 -62234540 + (CA)n Simple_repeat Simple_repeat 1 516 0 4 1250 267 302 80 18 chr6 87282630 87282847 -62234190 - L1P5 LINE L1 -248 5876 5642 4 1250 233 140 281 0 chr6 87282937 87282994 -62234043 - MER3 DNA MER1_type -26 183 111 4 1250 27 0 0 0 chr6 87283637 87283664 -62233373 + AT_rich Low_complexity Low_complexity 1 27 0 4 1250 338 269 118 30 chr6 87283920 87284123 -62232914 - ID_B1 SINE B4 -3 221 1 4 1250 264 309 0 93 chr6 87284765 87284872 -62232165 + MER20 DNA MER1_type 36 132 -87 4 1250 185 215 138 0 chr6 87285065 87285130 -62231907 + L3 LINE CR1 2140 2213 -2276 4 1250 294 29 0 0 chr6 87285806 87285841 -62231196 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1250 302 283 226 23 chr6 87286397 87286574 -62230463 + MLT1F2 LTR MaLR 357 569 0 4 1250 467 208 8 0 chr6 87287448 87287568 -62229469 + CT-rich Low_complexity Low_complexity 1 121 0 4 1250 602 340 23 49 chr6 87288775 87289038 -62227999 - MTE2b LTR MaLR -117 262 7 4 1250 2274 159 13 3 chr6 87289383 87289761 -62227276 - RLTR14 LTR ERV1 0 382 1 4 1250 237 350 76 28 chr6 87290053 87290197 -62226840 + MIR SINE MIR 26 176 -86 4 1250 23 0 0 0 chr6 87290585 87290608 -62226429 + AT_rich Low_complexity Low_complexity 1 23 0 4 1250 183 177 32 16 chr6 87290613 87290676 -62226361 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1250 381 297 28 107 chr6 87290687 87290864 -62226173 - RSINE1 SINE B4 0 165 3 4 1250 248 0 0 30 chr6 87290970 87291003 -62226034 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1250 408 40 0 0 chr6 87291003 87291052 -62225985 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1250 1136 205 115 35 chr6 87291149 87291497 -62225540 + MTEa LTR MaLR 2 377 -2 4 1250 940 299 133 14 chr6 87293349 87293702 -62223335 + MTC LTR MaLR 2 396 -25 4 1251 459 0 0 0 chr6 87294563 87294614 -62222423 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1251 279 0 0 0 chr6 87294614 87294644 -62222393 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1251 1002 224 0 27 chr6 87294991 87295211 -62221826 - B3 SINE B2 -2 214 1 4 1251 311 253 0 12 chr6 87296461 87296545 -62220492 + CT-rich Low_complexity Low_complexity 2 84 0 4 1251 421 260 74 49 chr6 87297636 87297798 -62219239 + MER53 DNA hAT 28 193 0 4 1251 1206 55 7 0 chr6 87299702 87299848 -62217189 + B1_Mus2 SINE Alu 1 147 0 4 1251 1432 146 27 0 chr6 87299944 87300163 -62216874 + URR1A DNA MER1_type 1 225 -1 4 1251 1239 124 75 14 chr6 87302200 87302413 -62214624 - URR1A DNA MER1_type 0 226 1 4 1251 287 49 24 0 chr6 87303099 87303140 -62213897 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 4 1251 456 233 0 0 chr6 87304044 87304164 -62212873 + (TG)n Simple_repeat Simple_repeat 1 120 0 4 1251 242 280 78 26 chr6 87306727 87306804 -62210233 + MER45C DNA Tip100 748 828 -125 4 1251 1133 276 42 0 chr6 87306838 87307099 -62209938 + B4A SINE B4 1 272 -20 4 1251 804 21 0 0 chr6 87307101 87307195 -62209842 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 1251 549 0 0 0 chr6 87307680 87307741 -62209296 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 1251 21 0 0 0 chr6 87307913 87307934 -62209103 + AT_rich Low_complexity Low_complexity 1 21 0 4 1251 201 74 0 0 chr6 87308238 87308265 -62208772 + (TCC)n Simple_repeat Simple_repeat 3 29 0 4 1251 230 328 117 0 chr6 87308749 87308877 -62208160 - L1MC LINE L1 -3686 2460 2318 4 1251 283 184 17 19 chr6 87308892 87308973 -62208064 - B1F SINE Alu -1 148 39 4 1251 207 0 0 0 chr6 87309140 87309163 -62207874 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1251 872 220 35 30 chr6 87309243 87309257 -62207780 - B3A SINE B2 0 198 186 4 1251 407 19 19 0 chr6 87309257 87309309 -62207728 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 4 1251 926 207 29 12 chr6 87309309 87309491 -62207546 - B3 SINE B2 -13 185 1 4 1251 1228 241 4 43 chr6 87309616 87309893 -62207144 + B4 SINE B4 8 273 -19 4 1251 5111 230 45 30 chr6 87309965 87311286 -62205751 - Lx9 LINE L1 -8 7636 6297 4 1251 454 300 73 46 chr6 87311320 87311579 -62205458 - Lx9 LINE L1 -1554 6090 5825 4 1251 1017 217 34 0 chr6 87311584 87311791 -62205246 + L1_Rod LINE L1 5573 5786 -61 4 1251 893 317 112 15 chr6 87311872 87312211 -62204826 - MTEb LTR MaLR -1 378 7 4 1251 207 162 0 0 chr6 87312318 87312355 -62204682 + T-rich Low_complexity Low_complexity 1 37 0 4 1251 575 41 0 0 chr6 87312356 87312429 -62204608 - B1_Mus2 SINE Alu 0 147 75 4 1251 326 227 55 33 chr6 87312429 87312447 -62204590 - ID_B1 SINE B4 0 224 132 4 1251 301 273 41 8 chr6 87312447 87312569 -62204468 - L1MC LINE L1 -877 5269 5144 4 1251 369 330 57 18 chr6 87312685 87313021 -62204016 - L1MD LINE L1 -2207 3939 3591 4 1251 6652 136 29 68 chr6 87313034 87313967 -62203070 + RLTR21 LTR ERVK 418 1302 -270 4 1251 440 105 0 13 chr6 87313967 87314044 -62202993 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1251 6652 136 29 68 chr6 87314044 87314312 -62202725 + RLTR21 LTR ERVK 1303 1571 -1 4 1251 22 35 0 0 chr6 87314794 87314823 -62202214 + AT_rich Low_complexity Low_complexity 1 29 0 4 1251 181 175 24 48 chr6 87314892 87314934 -62202103 + L3 LINE CR1 1058 1098 -3391 4 1251 372 261 50 8 chr6 87315384 87315530 -62201507 + SRV_MM-int LTR ERVK 3482 3656 -3597 4 1251 238 200 0 74 chr6 87316678 87316732 -62200305 - RLTR20B2 LTR ERVK -207 353 304 4 1251 1162 83 0 0 chr6 87317252 87317397 -62199640 + B1_Mus1 SINE Alu 1 145 -3 4 1251 521 30 15 0 chr6 87317432 87317499 -62199538 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1251 549 176 0 0 chr6 87317777 87317868 -62199169 + RLTR21 LTR ERVK 1 91 -1481 4 1251 348 319 87 42 chr6 87317914 87318247 -62198790 - L1MC LINE L1 -2749 3397 3053 4 1251 808 238 67 0 chr6 87318247 87318440 -62198597 - B3 SINE B2 -10 206 1 5 1251 348 319 87 42 chr6 87318440 87318658 -62198379 - L1MC LINE L1 -3094 3052 2821 4 1251 1441 160 13 23 chr6 87320427 87320727 -62196310 + L1_Mur3 LINE L1 5146 5442 -438 5 1251 207 156 0 0 chr6 87320922 87320954 -62196083 + GA-rich Low_complexity Low_complexity 1 32 0 5 1251 318 26 0 0 chr6 87321818 87321857 -62195180 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1251 785 129 0 25 chr6 87321857 87321976 -62195061 - B1_Mur4 SINE Alu -9 141 26 5 1251 318 314 191 16 chr6 87322081 87322269 -62194768 + MIR SINE MIR 14 234 -28 5 1251 198 282 100 25 chr6 87325128 87325208 -62191829 + L3 LINE CR1 3032 3117 -1372 5 1251 24 32 0 0 chr6 87325954 87325985 -62191052 + AT_rich Low_complexity Low_complexity 1 31 0 5 1251 331 315 154 0 chr6 87327039 87327201 -62189836 + MER3 DNA MER1_type 15 201 -8 5 1251 504 0 0 0 chr6 87328604 87328660 -62188377 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 5 1251 245 339 161 0 chr6 87331647 87331771 -62185266 + MER20 DNA MER1_type 71 214 -5 5 1251 345 260 57 187 chr6 87331799 87332045 -62184992 + MLT1J LTR MaLR 97 310 -202 5 1251 225 283 0 40 chr6 87332854 87333005 -62184032 + GA-rich Low_complexity Low_complexity 4 148 0 5 1251 268 254 0 45 chr6 87333023 87333200 -62183837 + GA-rich Low_complexity Low_complexity 4 172 0 5 1251 320 273 96 102 chr6 87333708 87333770 -62183267 + B4 SINE B4 52 217 -75 5 1251 831 48 0 0 chr6 87333770 87333875 -62183162 + B1_Mm SINE Alu 34 138 -9 5 1251 216 86 0 0 chr6 87333875 87333910 -62183127 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1251 527 183 29 0 chr6 87334796 87334900 -62182137 - B3A SINE B2 -89 109 3 5 1251 22 0 0 0 chr6 87335134 87335156 -62181881 + GC_rich Low_complexity Low_complexity 1 22 0 5 1251 939 182 93 10 chr6 87336153 87336358 -62180679 + URR1A DNA MER1_type 1 222 -4 5 1251 402 278 90 0 chr6 87338297 87338430 -62178607 + B1F SINE Alu 1 145 -4 5 1251 243 61 0 0 chr6 87339454 87339487 -62177550 + (CAAAC)n Simple_repeat Simple_repeat 4 36 0 5 1251 546 54 0 0 chr6 87341461 87341535 -62175502 + (GTTTG)n Simple_repeat Simple_repeat 5 78 0 5 1251 497 226 19 9 chr6 87341541 87341648 -62175389 + MTC LTR MaLR 35 142 -279 5 1251 375 131 0 47 chr6 87341655 87341719 -62175318 + MTD LTR MaLR 351 411 -8 5 1251 1333 288 98 38 chr6 87342395 87342995 -62174042 - L1MB5 LINE L1 -121 6053 5417 5 1251 346 314 163 80 chr6 87343700 87343862 -62173175 + L2 LINE L2 1714 1848 -1571 5 1251 279 0 0 0 chr6 87343862 87343893 -62173144 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1251 346 314 163 80 chr6 87343893 87344442 -62172595 + L2 LINE L2 1849 2488 -931 5 1251 435 78 0 0 chr6 87344442 87344506 -62172531 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1251 346 314 163 80 chr6 87344506 87344564 -62172473 + L2 LINE L2 2489 2547 -872 5 1251 579 344 22 70 chr6 87344708 87344980 -62172057 + MTEa LTR MaLR 3 261 -118 5 1251 248 38 55 36 chr6 87345672 87345727 -62171310 + (CAAAA)n Simple_repeat Simple_repeat 3 58 0 5 1251 510 195 0 11 chr6 87345803 87345891 -62171146 + B1_Mur1 SINE Alu 63 149 0 5 1251 533 245 18 74 chr6 87345895 87346058 -62170979 + RSINE1 SINE B4 2 155 -10 5 1251 247 325 102 39 chr6 87346489 87346617 -62170420 + ORR1E LTR MaLR 1 136 -223 5 1251 314 273 180 0 chr6 87347292 87347420 -62169617 - HAL1-3A_ME LINE L1 -420 2438 2288 5 1251 228 239 42 14 chr6 87347581 87347653 -62169384 + CT-rich Low_complexity Low_complexity 3 76 0 5 1251 213 117 33 16 chr6 87348193 87348254 -62168783 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1251 492 18 0 0 chr6 87348512 87348569 -62168468 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1251 786 222 5 86 chr6 87348582 87348779 -62168258 - B3A SINE B2 -16 182 2 5 1251 362 362 175 20 chr6 87348804 87349159 -62167878 - L1M5 LINE L1 -1095 5051 4642 5 1251 261 0 0 0 chr6 87350477 87350506 -62166531 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1251 360 0 0 0 chr6 87350506 87350545 -62166492 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1251 204 40 0 0 chr6 87350630 87350655 -62166382 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1251 417 298 131 27 chr6 87350677 87350936 -62166101 - B4A SINE B4 -4 288 3 5 1251 2163 93 66 17 chr6 87352092 87352442 -62164595 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1251 56124 30 9 6 chr6 87352446 87358899 -62158138 - IAPEz-int LTR ERVK -3 6478 8 5 1251 2163 93 66 17 chr6 87358899 87359249 -62157788 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1251 965 165 111 20 chr6 87359632 87359830 -62157207 + B3 SINE B2 1 216 0 5 1251 691 123 19 0 chr6 87360124 87360230 -62156807 - B1_Mur3 SINE Alu 0 149 42 5 1251 364 0 0 161 chr6 87360233 87360425 -62156612 + (CTCTG)n Simple_repeat Simple_repeat 5 165 0 5 1251 281 143 35 35 chr6 87360426 87360484 -62156553 - B1_Mur4 SINE Alu -90 60 3 5 1251 838 218 0 26 chr6 87360623 87360774 -62156263 + B1_Mur3 SINE Alu 2 148 -1 5 1251 396 0 0 0 chr6 87360805 87360849 -62156188 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1251 254 289 12 80 chr6 87361134 87361296 -62155741 - L1MB8 LINE L1 -83 6095 5945 5 1251 215 151 57 0 chr6 87361346 87361399 -62155638 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 5 1251 568 232 419 13 chr6 87362312 87362609 -62154428 + MTD LTR MaLR 1 418 -1 5 1251 180 0 0 0 chr6 87363429 87363449 -62153588 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 5 1251 306 0 0 0 chr6 87364210 87364244 -62152793 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1251 1004 132 8 0 chr6 87364928 87365175 -62151862 + (GA)n Simple_repeat Simple_repeat 1 249 0 5 1251 973 136 56 61 chr6 87365582 87365778 -62151259 - B2_Mm2 SINE B2 0 195 1 5 1251 1977 209 25 12 chr6 87366944 87367352 -62149685 - MTC LTR MaLR -8 413 1 5 1251 1227 44 9 7 chr6 87367468 87367639 -62149398 - B2_Mm2 SINE B2 -9 184 2 5 1251 279 0 0 0 chr6 87367829 87367860 -62149177 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1251 228 311 130 32 chr6 87370587 87370710 -62146327 + MIRb SINE MIR 115 249 -19 5 1251 186 152 0 57 chr6 87371219 87371254 -62145783 + MIRm SINE MIR 238 270 -6 5 1251 1009 63 0 0 chr6 87371879 87372005 -62145032 + B1_Mm SINE Alu 19 144 -3 5 1251 899 106 14 0 chr6 87372006 87372147 -62144890 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 5 1251 280 59 19 19 chr6 87374898 87374950 -62142087 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 5 1251 1253 34 7 0 chr6 87374956 87375103 -62141934 - B1_Mus1 SINE Alu 0 148 1 5 1251 354 23 0 0 chr6 87375907 87375950 -62141087 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1251 471 35 0 0 chr6 87377005 87377062 -62139975 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1251 225 237 0 0 chr6 87378832 87378891 -62138146 + G-rich Low_complexity Low_complexity 3 61 0 5 1251 303 159 0 32 chr6 87381131 87381199 -62135838 - B1F SINE Alu -27 120 64 5 1251 25 0 0 0 chr6 87381199 87381224 -62135813 + AT_rich Low_complexity Low_complexity 1 25 0 5 1251 406 279 12 0 chr6 87381232 87381318 -62135719 - PB1D10 SINE Alu -5 112 26 5 1251 183 143 200 67 chr6 87381748 87381808 -62135229 - L2a LINE L2 0 3426 3359 5 1251 542 254 35 35 chr6 87382316 87382459 -62134578 + B1F2 SINE Alu 2 144 -5 5 1251 183 42 0 0 chr6 87382612 87382636 -62134401 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1251 286 415 7 0 chr6 87382765 87382907 -62134130 - MER58A DNA MER1_type -81 143 1 5 1251 2166 91 21 53 chr6 87383116 87383454 -62133583 - ORR1A2 LTR MaLR 0 327 1 5 1251 189 0 0 0 chr6 87386057 87386078 -62130959 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1251 309 100 0 0 chr6 87387240 87387290 -62129747 + (CACCC)n Simple_repeat Simple_repeat 5 54 0 5 1251 28 79 0 0 chr6 87387324 87387387 -62129650 + AT_rich Low_complexity Low_complexity 1 63 0 5 1251 266 302 95 0 chr6 87389532 87389658 -62127379 - L3 LINE CR1 -397 4092 3955 5 1251 486 0 0 0 chr6 87389798 87389852 -62127185 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1251 1241 88 21 47 chr6 87390295 87390461 -62126576 + B2_Mm2 SINE B2 10 179 -16 5 1251 279 54 0 0 chr6 87390461 87390498 -62126539 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1251 1241 88 21 47 chr6 87390498 87390522 -62126515 + B2_Mm2 SINE B2 180 195 0 5 1251 319 235 92 70 chr6 87390581 87390723 -62126314 + L1MC4a LINE L1 7442 7586 -296 5 1251 294 95 0 0 chr6 87390791 87390833 -62126204 + (TTG)n Simple_repeat Simple_repeat 2 43 0 5 1251 404 104 0 15 chr6 87390833 87390901 -62126136 + (TCC)n Simple_repeat Simple_repeat 1 67 0 5 1251 464 283 47 27 chr6 87391621 87391770 -62125267 + MER53 DNA hAT 39 190 -3 5 1251 233 247 74 49 chr6 87392374 87392455 -62124582 - L1MD3 LINE L1 -586 7409 7327 5 1251 402 21 0 0 chr6 87392958 87393005 -62124032 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1251 249 108 0 0 chr6 87393026 87393063 -62123974 + (CAT)n Simple_repeat Simple_repeat 2 38 0 5 1251 370 356 27 58 chr6 87394256 87394444 -62122593 - B4A SINE B4 -14 278 97 5 1251 33 43 0 0 chr6 87394602 87394649 -62122388 + AT_rich Low_complexity Low_complexity 1 47 0 5 1251 772 317 114 34 chr6 87394782 87395528 -62121509 - Charlie1 DNA MER1_type -6 2775 2039 5 1251 879 228 67 10 chr6 87396792 87397000 -62120037 - ID_B1 SINE B4 -1 223 4 5 1251 287 49 24 0 chr6 87397040 87397081 -62119956 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1251 405 0 0 0 chr6 87397081 87397126 -62119911 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1251 213 279 49 0 chr6 87398327 87398388 -62118649 + MIRm SINE MIR 213 276 0 5 1251 368 253 88 13 chr6 87399716 87399836 -62117201 - MIR SINE MIR 0 268 143 5 1251 1010 246 0 9 chr6 87399981 87400198 -62116839 + ID_B1 SINE B4 4 218 -6 5 1251 248 281 0 72 chr6 87400907 87400976 -62116061 + RSINE1 SINE B4 3 66 -99 6 1251 243 0 0 0 chr6 87401442 87401469 -62115568 + (CCTA)n Simple_repeat Simple_repeat 4 30 0 6 1251 510 281 166 12 chr6 87402173 87402414 -62114623 - B4A SINE B4 -14 278 1 6 1251 212 276 0 0 chr6 87402435 87402493 -62114544 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 1251 306 0 0 0 chr6 87402618 87402652 -62114385 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1251 1178 277 45 27 chr6 87402964 87403298 -62113739 - MTE2b LTR MaLR -39 340 1 6 1251 729 208 40 13 chr6 87404110 87404261 -62112776 - MTE2b LTR MaLR -123 256 102 6 1251 1449 215 152 80 chr6 87404282 87404843 -62112194 + MT2B LTR ERVL 1 601 0 6 1251 214 310 84 0 chr6 87405298 87405369 -62111668 + MIR3 SINE MIR 95 171 -37 6 1251 226 93 36 18 chr6 87406019 87406074 -62110963 + (CAAAAA)n Simple_repeat Simple_repeat 4 59 0 6 1251 429 20 0 0 chr6 87406701 87406751 -62110286 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1251 261 57 0 0 chr6 87406751 87406786 -62110251 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1251 352 307 42 102 chr6 87406791 87406958 -62110079 - RSINE1 SINE B4 -6 159 3 6 1251 406 130 104 0 chr6 87407022 87407176 -62109861 + (CTGTG)n Simple_repeat Simple_repeat 1 170 0 6 1251 436 152 90 41 chr6 87407202 87407553 -62109484 + (CTGTG)n Simple_repeat Simple_repeat 1 368 0 6 1251 388 125 86 35 chr6 87407578 87407876 -62109161 + (CTGTG)n Simple_repeat Simple_repeat 1 313 0 6 1251 415 123 104 0 chr6 87407902 87408056 -62108981 + (CTGTG)n Simple_repeat Simple_repeat 1 170 0 6 1251 2930 148 48 24 chr6 87408207 87408747 -62108290 + RLTR31_Mur LTR ERVK 1 553 0 6 1251 267 103 0 0 chr6 87409092 87409131 -62107906 + (TATG)n Simple_repeat Simple_repeat 1 39 0 6 1251 798 203 126 33 chr6 87409131 87409314 -62107723 - B3 SINE B2 -8 208 9 6 1251 249 325 52 73 chr6 87411218 87411354 -62105683 + MIRb SINE MIR 20 152 -116 6 1251 1130 88 0 0 chr6 87411804 87411951 -62105086 + B1_Mus2 SINE Alu 1 147 0 6 1251 3124 174 108 6 chr6 87411992 87412650 -62104387 + Lx9 LINE L1 6702 7426 -218 6 1251 935 276 89 30 chr6 87413998 87414300 -62102737 + MTE2b LTR MaLR 22 341 -38 6 1251 222 128 0 0 chr6 87414370 87414409 -62102628 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1251 792 214 103 6 chr6 87418153 87418327 -62098710 - ID_B1 SINE B4 -30 194 4 6 1251 390 300 167 23 chr6 87419204 87419378 -62097659 - MER3 DNA MER1_type -1 208 10 6 1251 1154 279 102 3 chr6 87419425 87419759 -62097278 + MTEb LTR MaLR 13 379 0 6 1251 192 40 0 0 chr6 87419844 87419869 -62097168 + (CTG)n Simple_repeat Simple_repeat 3 27 0 6 1251 3534 32 0 128 chr6 87419885 87420385 -62096652 + RLTR10C LTR ERVK 1 436 0 6 1251 588 318 77 30 chr6 87421264 87421562 -62095475 + MER58B DNA MER1_type 30 341 0 6 1251 225 0 0 0 chr6 87421799 87421824 -62095213 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1251 355 277 68 97 chr6 87422537 87422549 -62094488 + B4A SINE B4 78 142 -150 6 1251 974 142 14 0 chr6 87422549 87422697 -62094340 + B1_Mur4 SINE Alu 1 150 0 6 1251 355 277 68 97 chr6 87422697 87422713 -62094324 + B4A SINE B4 143 248 -44 6 1251 1046 105 12 0 chr6 87422733 87422895 -62094142 + (GAGAA)n Simple_repeat Simple_repeat 2 165 0 6 1251 214 270 0 45 chr6 87423520 87423611 -62093426 + (TATG)n Simple_repeat Simple_repeat 1 86 0 6 1251 460 314 63 52 chr6 87423611 87423897 -62093140 - B4A SINE B4 -2 290 2 6 1251 200 100 0 24 chr6 87424535 87424576 -62092461 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1251 1239 48 7 0 chr6 87424835 87424982 -62092055 + B1_Mus1 SINE Alu 1 148 0 6 1252 180 0 0 0 chr6 87425695 87425715 -62091322 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1252 195 129 0 0 chr6 87426439 87426470 -62090567 + (CAT)n Simple_repeat Simple_repeat 2 32 0 6 1252 839 213 115 16 chr6 87426471 87426662 -62090375 - B3 SINE B2 -2 214 5 6 1252 3542 288 49 29 chr6 87426725 87427955 -62089082 - Lx9 LINE L1 -18 7626 6372 6 1252 1909 190 19 5 chr6 87428155 87428526 -62088511 + ORR1C1 LTR MaLR 1 376 -2 6 1252 1973 145 0 59 chr6 87431412 87431750 -62085287 + ORR1A3 LTR MaLR 1 318 -8 6 1252 507 141 0 0 chr6 87435325 87435417 -62081620 + (CA)n Simple_repeat Simple_repeat 2 93 0 6 1252 24 0 0 0 chr6 87436137 87436161 -62080876 + AT_rich Low_complexity Low_complexity 1 24 0 6 1252 301 318 73 113 chr6 87436337 87436622 -62080415 - L2a LINE L2 -323 3103 2822 6 1252 563 292 72 17 chr6 87436986 87437167 -62079870 + B3A SINE B2 8 198 0 6 1252 378 274 111 41 chr6 87439683 87439854 -62077183 + L2a LINE L2 2717 2899 -520 6 1252 212 378 70 28 chr6 87439865 87440080 -62076957 + L2a LINE L2 2947 3170 -256 6 1252 776 114 8 0 chr6 87440778 87440909 -62076128 + (GA)n Simple_repeat Simple_repeat 2 133 0 6 1252 222 284 227 39 chr6 87441370 87441524 -62075513 - MIRb SINE MIR -24 244 62 6 1252 467 291 38 104 chr6 87442323 87442534 -62074503 + B3A SINE B2 1 197 -1 6 1252 460 309 121 51 chr6 87442540 87442692 -62074345 + MER63B DNA AcHobo 143 306 -130 6 1252 778 180 175 0 chr6 87442692 87442875 -62074162 - B3 SINE B2 0 216 2 6 1252 460 309 121 51 chr6 87442875 87442995 -62074042 + MER63B DNA AcHobo 307 433 -3 6 1252 359 256 199 19 chr6 87443131 87443333 -62073704 - L1MC LINE L1 -711 5413 5176 6 1252 308 283 233 39 chr6 87444959 87445341 -62071696 + L2 LINE L2 2627 3082 -337 6 1252 181 214 139 28 chr6 87447545 87447617 -62069420 + L3 LINE CR1 1636 1715 -2774 6 1252 1456 83 16 0 chr6 87448168 87448360 -62068677 - B2_Mm2 SINE B2 0 195 1 6 1252 244 317 114 38 chr6 87449552 87449683 -62067354 - MER3 DNA MER1_type 0 209 69 6 1252 254 256 43 65 chr6 87452607 87452699 -62064338 - MLT1A1 LTR MaLR -2 406 317 6 1252 240 275 186 64 chr6 87452749 87452889 -62064148 - MLT1A1 LTR MaLR -184 181 25 6 1252 342 0 0 0 chr6 87453644 87453682 -62063355 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1252 819 31 0 0 chr6 87453950 87454048 -62062989 + (TC)n Simple_repeat Simple_repeat 2 99 0 6 1252 301 276 101 36 chr6 87454805 87454944 -62062093 + L1M2 LINE L1 5244 5391 -752 6 1252 264 185 0 0 chr6 87455438 87455492 -62061545 + GA-rich Low_complexity Low_complexity 3 56 0 6 1252 788 292 79 79 chr6 87455922 87456247 -62060790 - L1M4c LINE L1 -2265 4111 3791 6 1252 1042 172 62 29 chr6 87456247 87456456 -62060581 + B3 SINE B2 1 216 0 6 1252 788 292 79 79 chr6 87456456 87456740 -62060297 - L1M4c LINE L1 -2586 3790 3502 6 1252 1146 283 136 18 chr6 87456886 87457623 -62059414 - L1M4c LINE L1 -3917 2467 1644 6 1252 1413 58 6 0 chr6 87457623 87457796 -62059241 - B2_Mm1t SINE B2 -19 174 1 6 1252 230 248 52 122 chr6 87457796 87457823 -62059214 - L1M4c LINE L1 -5011 2323 2303 6 1252 528 16 0 0 chr6 87457829 87457890 -62059147 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1252 572 244 26 17 chr6 87457894 87458011 -62059026 - RSINE1 SINE B4 -31 134 17 6 1252 1729 244 60 31 chr6 87458026 87458061 -62058976 - L1M4c LINE L1 -4742 2266 2233 6 1252 7798 20 3 1 chr6 87458061 87458950 -62058087 + L1Md_F3 LINE L1 5686 6576 -8 6 1252 1729 244 60 31 chr6 87458950 87459526 -62057511 - L1M4c LINE L1 -4776 2232 1637 6 1252 383 216 21 0 chr6 87459523 87459620 -62057417 - L1M4c LINE L1 -5496 1512 1414 6 1252 216 182 0 0 chr6 87459626 87459670 -62057367 + GA-rich Low_complexity Low_complexity 2 45 0 6 1252 237 238 128 37 chr6 87459673 87459782 -62057255 - L1M4c LINE L1 -5592 1416 1298 6 1252 243 283 131 16 chr6 87459926 87460048 -62056989 - L1M4c LINE L1 -6034 974 839 6 1252 1294 240 201 38 chr6 87460048 87460533 -62056504 + MT2B LTR ERVL 1 601 0 6 1252 603 283 54 5 chr6 87460540 87460725 -62056312 - L1M4c LINE L1 -6172 836 643 6 1252 291 113 0 0 chr6 87460848 87460901 -62056136 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 6 1252 337 294 142 81 chr6 87460936 87461084 -62055953 - RSINE1 SINE B4 -4 161 5 6 1252 331 312 87 25 chr6 87461788 87461949 -62055088 + L1MC LINE L1 5101 5271 -875 6 1252 358 165 29 19 chr6 87462075 87462180 -62054857 + GA-rich Low_complexity Low_complexity 1 106 0 6 1252 404 288 185 50 chr6 87462184 87462601 -62054436 + L1M5 LINE L1 5277 5749 -430 6 1252 2135 137 67 3 chr6 87464686 87465030 -62052007 + ORR1B2 LTR MaLR 2 367 0 6 1252 4995 168 108 7 chr6 87465030 87466061 -62050976 + ORR1B2-int LTR MaLR 1 1135 -374 6 1252 187 360 124 7 chr6 87466084 87466221 -62050816 + MER5B DNA MER1_type 23 175 -3 6 1252 245 355 0 13 chr6 87466527 87466604 -62050433 - MER45R DNA Tip100 0 1581 1506 6 1252 366 316 43 9 chr6 87466760 87466875 -62050162 + ORR1E LTR MaLR 24 142 -217 6 1252 269 328 96 30 chr6 87466896 87467031 -62050006 + ORR1E LTR MaLR 236 379 0 6 1252 872 0 19 0 chr6 87468433 87468536 -62048501 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 6 1252 22 0 0 0 chr6 87469123 87469145 -62047892 + AT_rich Low_complexity Low_complexity 1 22 0 6 1252 434 352 0 35 chr6 87469646 87469790 -62047247 + MER45A DNA Tip100 1 139 -39 6 1252 281 343 110 76 chr6 87470290 87470580 -62046457 - MTEa LTR MaLR -61 318 19 6 1252 934 131 0 40 chr6 87471073 87471209 -62045828 + B1_Mur3 SINE Alu 5 136 -13 6 1252 516 32 0 0 chr6 87471209 87471271 -62045766 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1252 934 131 0 40 chr6 87471271 87471285 -62045752 + B1_Mur3 SINE Alu 137 149 0 6 1252 583 290 25 114 chr6 87472681 87472996 -62044041 - Lx8 LINE L1 -84 7389 7103 6 1252 1965 244 106 14 chr6 87475472 87476038 -62040999 + RCHARR1 DNA MER1_type 2 619 -355 6 1252 932 185 6 12 chr6 87476078 87476242 -62040795 + B2_Mm2 SINE B2 2 164 -31 6 1252 883 76 15 8 chr6 87476249 87476382 -62040655 + (GAAAA)n Simple_repeat Simple_repeat 3 136 0 6 1252 858 247 5 11 chr6 87476384 87476568 -62040469 - B3 SINE B2 -28 188 6 6 1252 1500 254 22 8 chr6 87476573 87476939 -62040098 + RCHARR1 DNA MER1_type 600 970 -4 6 1252 1853 134 60 18 chr6 87477077 87477411 -62039626 + RLTR15 LTR ERVK 12 359 0 6 1252 185 250 0 0 chr6 87477882 87477922 -62039115 + MIRc SINE MIR 213 252 -16 6 1252 255 268 51 10 chr6 87479116 87479214 -62037823 - L1ME3B LINE L1 -159 6081 5980 6 1252 230 314 89 16 chr6 87479563 87479686 -62037351 - L1ME3B LINE L1 -740 5500 5369 6 1252 886 223 27 21 chr6 87480569 87480757 -62036280 + MER20 DNA MER1_type 29 217 -2 6 1252 212 309 125 21 chr6 87481200 87481296 -62035741 - MER5A DNA MER1_type -24 165 60 6 1252 552 42 0 0 chr6 87481916 87481987 -62035050 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 1252 277 224 172 0 chr6 87482081 87482139 -62034898 + B1_Mur1 SINE Alu 61 128 -21 6 1252 275 329 99 19 chr6 87483925 87484086 -62032951 + MIR SINE MIR 12 185 -77 6 1252 411 310 138 32 chr6 87484180 87484586 -62032451 + L2 LINE L2 1646 2094 -1325 6 1252 288 300 33 22 chr6 87484955 87485047 -62031990 - MLT1H2 LTR MaLR -336 153 61 7 1252 935 115 7 0 chr6 87486040 87486188 -62030849 + (GGAA)n Simple_repeat Simple_repeat 3 151 0 7 1252 979 142 301 78 chr6 87486559 87486738 -62030299 + RMER17C LTR ERVK 1 187 -223 7 1252 524 42 0 14 chr6 87486738 87486810 -62030227 + (TC)n Simple_repeat Simple_repeat 2 72 0 7 1252 979 142 301 78 chr6 87486810 87486965 -62030072 + RMER17C LTR ERVK 188 409 -1 7 1252 297 0 0 0 chr6 87487386 87487419 -62029618 + (ATTG)n Simple_repeat Simple_repeat 1 33 0 7 1252 754 171 8 37 chr6 87487430 87487564 -62029473 - B1_Mur1 SINE Alu -15 134 5 7 1252 512 336 70 8 chr6 87487717 87487975 -62029062 - MER44B DNA MER2_type -32 518 245 7 1252 317 257 107 64 chr6 87489006 87489193 -62027844 - L2a LINE L2 -39 3387 3193 7 1252 1866 144 21 86 chr6 87489195 87489652 -62027385 - RMER17C LTR ERVK -519 439 10 7 1252 1244 176 5 19 chr6 87490735 87490944 -62026093 + URR1B DNA MER1_type 20 225 0 7 1252 188 387 0 13 chr6 87490957 87491033 -62026004 + MIRb SINE MIR 184 258 -10 7 1252 338 240 167 0 chr6 87491530 87491626 -62025411 - PB1D7 SINE Alu -8 112 1 7 1252 693 240 19 13 chr6 87491626 87491706 -62025331 - ID SINE ID -143 81 1 7 1252 651 26 0 0 chr6 87491804 87491881 -62025156 + (CA)n Simple_repeat Simple_repeat 2 78 0 7 1252 724 213 63 25 chr6 87491910 87492069 -62024968 - B3 SINE B2 -51 165 1 7 1252 1029 289 4 4 chr6 87492818 87493079 -62023958 + B4 SINE B4 4 264 -28 7 1252 514 254 27 0 chr6 87493082 87493192 -62023845 - MTE2b LTR MaLR -208 171 59 7 1252 639 57 0 0 chr6 87493223 87493311 -62023726 + (CA)n Simple_repeat Simple_repeat 2 89 0 7 1252 732 308 103 15 chr6 87493324 87493720 -62023317 + MLT1D LTR MaLR 75 505 0 7 1252 848 246 79 90 chr6 87493903 87494269 -62022768 + ORR1D2 LTR MaLR 1 362 -8 7 1252 928 171 9 3 chr6 87494367 87494681 -62022356 + GA-rich Low_complexity Low_complexity 1 315 0 7 1252 204 40 0 0 chr6 87494683 87494708 -62022329 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 7 1252 245 325 131 67 chr6 87494860 87495127 -62021910 + Tigger13a DNA MER2_type 58 341 -430 7 1252 4975 161 93 55 chr6 87495635 87496698 -62020339 - RLTR25A LTR ERVK 0 1103 1 7 1252 5025 69 9 0 chr6 87498180 87498819 -62018218 - L1Md_T LINE L1 0 6582 5938 7 1252 6412 31 2 4 chr6 87498819 87499681 -62017356 + L1Md_T LINE L1 5170 6024 -985 7 1252 758 172 15 0 chr6 87499754 87499888 -62017149 + B1_Mur3 SINE Alu 1 136 -13 7 1252 4060 37 0 20 chr6 87500103 87500598 -62016439 + L1Md_F2 LINE L1 6095 6579 -3 1 1252 483 226 20 0 chr6 87502886 87502988 -62014049 + B3 SINE B2 9 112 -104 2 1252 1434 75 16 0 chr6 87503085 87503272 -62013765 + B2_Mm2 SINE B2 4 193 -2 3 1252 363 97 16 0 chr6 87503479 87503541 -62013496 + Lx5 LINE L1 6985 7047 -3 4 1252 208 293 115 43 chr6 87504247 87504386 -62012651 + MIR3 SINE MIR 31 179 -29 5 1252 499 160 160 0 chr6 87504671 87504771 -62012266 - PB1D9 SINE Alu -3 117 2 6 1252 5867 34 1 3 chr6 87504790 87505477 -62011560 - L1Md_F2 LINE L1 0 6582 5897 7 1252 259 32 0 0 chr6 87505477 87505508 -62011529 + L1_Mm LINE L1 5283 5313 -570 8 1252 672 218 43 31 chr6 87505621 87505767 -62011270 + RSINE1 SINE B4 3 151 -14 9 1252 189 147 0 0 chr6 87505767 87505801 -62011236 + (CATG)n Simple_repeat Simple_repeat 1 34 0 1 1252 672 218 43 31 chr6 87505801 87505815 -62011222 + RSINE1 SINE B4 152 165 0 9 1252 1407 231 62 6 chr6 87506017 87506374 -62010663 - MTD LTR MaLR 0 419 43 1 1252 308 259 42 49 chr6 87507003 87507145 -62009892 - L1M5 LINE L1 -972 5472 5332 1 1252 737 305 109 21 chr6 87507259 87507691 -62009346 - L1MA4 LINE L1 -368 5932 5463 1 1252 447 328 116 21 chr6 87507704 87508200 -62008837 - L1MA4 LINE L1 -753 5390 4810 1 1252 435 261 128 33 chr6 87508209 87508451 -62008586 - L1MA4 LINE L1 -1700 4440 4176 1 1252 1127 291 127 32 chr6 87508623 87509198 -62007839 - L1MA4 LINE L1 -2208 3935 3266 1 1252 1336 99 20 20 chr6 87509198 87509393 -62007644 - B2_Mm2 SINE B2 0 195 1 1 1252 1127 291 127 32 chr6 87509393 87509651 -62007386 - L1MA4 LINE L1 -2878 3265 3023 1 1252 1190 176 56 65 chr6 87509766 87509951 -62007086 - RLTR15 LTR ERVK -40 319 139 1 1252 189 0 0 0 chr6 87509951 87509972 -62007065 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1252 582 15 0 0 chr6 87509972 87510038 -62006999 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1252 1190 176 56 65 chr6 87510038 87510173 -62006864 - RLTR15 LTR ERVK -221 138 2 1 1252 237 314 117 81 chr6 87510181 87510446 -62006591 - L1M5 LINE L1 -900 5246 4945 1 1252 1939 122 72 10 chr6 87510446 87510752 -62006285 - ORR1A2 LTR MaLR 0 327 3 1 1252 237 314 117 81 chr6 87510752 87510965 -62006072 - L1M5 LINE L1 -1202 4944 4751 1 1252 647 242 32 32 chr6 87511051 87511246 -62005791 + B3A SINE B2 15 216 0 1 1252 251 307 60 106 chr6 87511273 87511862 -62005175 - L1M5 LINE L1 -1519 4627 4058 1 1252 358 263 13 27 chr6 87511941 87512070 -62004967 - L1M5 LINE L1 -2238 3908 3770 1 1252 694 265 76 50 chr6 87512224 87512827 -62004210 - L1M5 LINE L1 -2639 3507 2889 1 1252 366 272 132 29 chr6 87513114 87513288 -62003749 - L1M5 LINE L1 -3261 2885 2694 1 1252 464 315 136 31 chr6 87515264 87515684 -62001353 + HAL1 LINE L1 114 577 -1930 2 1252 447 274 26 0 chr6 87516055 87516168 -62000869 - PB1D7 SINE Alu -1 119 4 2 1252 232 299 68 8 chr6 87516175 87516293 -62000744 - MIR SINE MIR -101 161 37 2 1252 2254 157 48 5 chr6 87516312 87516708 -62000329 - MTC LTR MaLR -8 413 1 2 1252 450 0 0 0 chr6 87517391 87517441 -61999596 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1252 189 384 0 34 chr6 87517502 87517591 -61999446 + L2c LINE L2 3290 3375 -12 2 1252 216 0 0 0 chr6 87518791 87518815 -61998222 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1252 314 264 66 0 chr6 87520561 87520652 -61996385 + B1F SINE Alu 53 149 0 2 1252 456 156 39 8 chr6 87520685 87520814 -61996223 + (CA)n Simple_repeat Simple_repeat 2 134 0 2 1252 4809 117 20 14 chr6 87521609 87522409 -61994628 + RLTR22_Mur LTR ERVK 1 805 -1043 2 1252 456 310 42 51 chr6 87522630 87522844 -61994193 + RMER12 LTR ERVK 1111 1322 0 3 1252 389 260 119 62 chr6 87523343 87523536 -61993501 - MLT1J LTR MaLR -215 297 94 3 1252 2160 90 261 0 chr6 87523756 87524090 -61992947 + MTC LTR MaLR 1 421 0 3 1252 376 252 65 0 chr6 87524155 87524290 -61992747 + LTR80A LTR ERVL 79 222 -361 3 1252 674 215 122 188 chr6 87524290 87524690 -61992347 + MTEa LTR MaLR 1 374 -5 3 1252 2014 141 57 80 chr6 87525404 87525791 -61991246 + ORR1C1 LTR MaLR 1 378 0 3 1252 846 309 22 51 chr6 87525991 87526346 -61990691 - MTEb LTR MaLR -34 345 1 3 1252 185 320 40 0 chr6 87527062 87527137 -61989900 + MIRc SINE MIR 23 100 -168 3 1252 322 252 0 36 chr6 87527151 87527262 -61989775 + (CACCC)n Simple_repeat Simple_repeat 5 111 0 3 1252 805 109 41 62 chr6 87527409 87527555 -61989482 - B1_Mus1 SINE Alu -1 147 5 3 1252 450 0 0 0 chr6 87527869 87527919 -61989118 + (TAA)n Simple_repeat Simple_repeat 2 51 0 4 1252 985 45 97 0 chr6 87527920 87528054 -61988983 + B1_Mus2 SINE Alu 1 147 0 4 1252 297 100 0 0 chr6 87528128 87528178 -61988859 + (ATTG)n Simple_repeat Simple_repeat 2 51 0 4 1252 201 171 0 0 chr6 87528936 87528971 -61988066 + T-rich Low_complexity Low_complexity 1 35 0 4 1252 301 319 14 29 chr6 87529677 87529816 -61987221 - HAL1-2a_MD LINE L1 -572 2452 2316 4 1252 329 323 144 26 chr6 87530534 87530763 -61986274 + MER115 DNA Tip100 177 432 -261 4 1252 243 224 35 0 chr6 87533225 87533283 -61983754 + ID4_ SINE ID 3 62 -21 4 1252 501 58 0 0 chr6 87533311 87533380 -61983657 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1252 789 258 71 57 chr6 87533388 87533687 -61983350 - MTE2a LTR MaLR -22 397 89 4 1252 336 346 142 13 chr6 87535125 87535512 -61981525 + L2a LINE L2 2964 3400 -26 4 1252 354 288 27 0 chr6 87535973 87536084 -61980953 + PB1D10 SINE Alu 4 117 0 5 1252 405 252 126 30 chr6 87537676 87537811 -61979226 + Lx5 LINE L1 6892 7039 -11 5 1252 426 272 58 29 chr6 87541296 87541504 -61975533 + L1M3 LINE L1 5603 5816 -367 5 1252 328 278 29 94 chr6 87541527 87541698 -61975339 + L1MB3 LINE L1 5523 5682 -498 5 1252 242 273 15 0 chr6 87541794 87541860 -61975177 - MTEa LTR MaLR 0 379 313 5 1252 5267 48 5 0 chr6 87541871 87542510 -61974527 + L1_Mus1 LINE L1 5926 6567 0 5 1252 216 200 0 0 chr6 87542516 87542576 -61974461 + A-rich Low_complexity Low_complexity 1 60 0 5 1252 1179 286 7 10 chr6 87542576 87542866 -61974171 - MTEa LTR MaLR -88 291 3 5 1252 269 333 0 0 chr6 87542876 87542945 -61974092 - MTEa-int LTR MaLR -14 1566 1498 5 1252 1177 68 0 0 chr6 87542946 87543093 -61973944 + B1_Mus1 SINE Alu 2 148 0 5 1252 25 0 0 0 chr6 87543095 87543120 -61973917 + AT_rich Low_complexity Low_complexity 1 25 0 5 1252 826 221 184 65 chr6 87543124 87543433 -61973604 - MTEa-int LTR MaLR -70 1510 1165 5 1252 680 194 0 22 chr6 87543442 87543579 -61973458 + MT2A LTR ERVL 1 134 -399 5 1252 260 145 0 0 chr6 87543621 87543671 -61973366 - MT2A LTR ERVL 0 584 491 6 1252 324 206 10 10 chr6 87543705 87543803 -61973234 - MT2A LTR ERVL -39 494 397 6 1252 302 237 76 42 chr6 87543823 87543942 -61973095 + MT2A LTR ERVL 331 453 -148 5 1252 329 146 0 0 chr6 87543948 87544003 -61973034 - MT2A LTR ERVL -385 148 94 6 1252 281 242 156 10 chr6 87544005 87544101 -61972936 - MT2A LTR ERVL -408 125 16 6 1252 2699 290 76 96 chr6 87544101 87545285 -61971752 - MTEa-int LTR MaLR -420 1160 1 5 1252 790 230 31 94 chr6 87545285 87545573 -61971464 + L1MB3 LINE L1 5738 6007 -176 5 1252 279 308 65 45 chr6 87545671 87545956 -61971081 + MTEb LTR MaLR 93 380 -4 6 1252 1070 79 0 7 chr6 87545986 87546127 -61970910 - B1_Mus1 SINE Alu -6 142 3 6 1252 859 143 0 14 chr6 87546350 87546492 -61970545 - B1_Mur3 SINE Alu -1 148 9 6 1252 909 170 0 0 chr6 87546513 87546654 -61970383 - B1_Mur2 SINE Alu -6 143 3 6 1252 420 71 0 0 chr6 87546662 87546718 -61970319 + (TTTTC)n Simple_repeat Simple_repeat 2 57 0 6 1252 556 271 51 46 chr6 87546746 87546943 -61970094 - B3A SINE B2 0 198 1 6 1252 200 200 0 0 chr6 87546950 87546985 -61970052 + CT-rich Low_complexity Low_complexity 2 36 0 6 1252 682 178 6 76 chr6 87546998 87547156 -61969881 - B1_Mur1 SINE Alu -1 148 2 6 1252 392 227 60 60 chr6 87547322 87547439 -61969598 + L1MB4 LINE L1 5992 6108 -72 7 1252 219 139 0 0 chr6 87548186 87548222 -61968815 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1252 360 191 60 60 chr6 87548463 87548563 -61968474 + RMER10A LTR ERVL 318 417 -25 7 1252 227 264 14 0 chr6 87548823 87548895 -61968142 + L1ME3A LINE L1 6089 6161 -12 7 1252 797 186 7 7 chr6 87549178 87549319 -61967718 + B1_Mur4 SINE Alu 1 141 -9 7 1252 468 0 0 0 chr6 87549319 87549371 -61967666 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1252 535 126 143 93 chr6 87549456 87549544 -61967493 + URR1A DNA MER1_type 80 186 -40 7 1252 1747 16 0 0 chr6 87549544 87549735 -61967302 - B2_Mm1t SINE B2 -2 191 1 7 1252 535 126 143 93 chr6 87549735 87549786 -61967251 + URR1A DNA MER1_type 187 226 0 7 1252 1263 100 0 0 chr6 87550236 87550445 -61966592 + (TG)n Simple_repeat Simple_repeat 1 209 0 7 1252 379 132 31 21 chr6 87550854 87550937 -61966100 - B1_Mur4 SINE Alu -33 87 9 7 1252 656 239 77 31 chr6 87550971 87551165 -61965872 - B3 SINE B2 -12 204 2 8 1252 263 26 0 49 chr6 87551404 87551445 -61965592 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 8 1252 288 353 8 8 chr6 87551542 87551662 -61965375 - Lx8 LINE L1 -1142 6331 6212 8 1252 207 105 0 26 chr6 87551675 87551714 -61965323 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 8 1252 248 303 0 0 chr6 87552373 87552449 -61964588 + PB1D10 SINE Alu 40 115 -2 8 1252 749 110 106 37 chr6 87552599 87552760 -61964277 - MusHAL1 LINE L1 -1795 917 746 8 1252 1513 260 51 2 chr6 87552773 87553319 -61963718 - Lx7 LINE L1 -483 7213 6571 8 1252 751 213 0 13 chr6 87553349 87553501 -61963536 - URR1B DNA MER1_type -43 182 33 8 1252 1526 253 17 31 chr6 87553517 87553876 -61963161 - Lx7 LINE L1 -1138 6558 6205 8 1252 286 290 0 0 chr6 87553879 87553941 -61963096 - B1_Mus2 SINE Alu -85 62 1 8 1252 235 328 0 0 chr6 87553881 87553948 -61963089 - B4 SINE B4 -147 145 79 8 1252 30 0 0 0 chr6 87554023 87554053 -61962984 + AT_rich Low_complexity Low_complexity 1 30 0 9 1252 231 274 31 143 chr6 87554083 87554181 -61962856 + MT2B LTR ERVL 178 264 -337 9 1252 467 179 0 0 chr6 87554111 87554189 -61962848 + B1_Mus2 SINE Alu 43 120 -27 9 1252 2408 194 132 0 chr6 87554224 87554760 -61962277 + L1_Mur3 LINE L1 3478 4084 -1796 9 1252 230 345 36 0 chr6 87555218 87555302 -61961735 + MIR SINE MIR 41 127 -81 9 1252 211 262 24 36 chr6 87555394 87555477 -61961560 + GA-rich Low_complexity Low_complexity 2 83 0 9 1253 338 286 169 21 chr6 87557039 87557371 -61959666 + BLACKJACK DNA AcHobo 1726 2106 -838 9 1253 919 286 120 40 chr6 87557420 87558047 -61958990 - L1MB2 LINE L1 -54 6117 5441 9 1253 482 273 159 76 chr6 87558055 87558716 -61958321 - L1MB2 LINE L1 -1526 4614 3899 9 1253 1476 309 129 15 chr6 87558796 87559858 -61957179 - L1MB2 LINE L1 -2624 3516 2334 9 1253 335 261 6 0 chr6 87559880 87559970 -61957067 - ID4 SINE ID -51 101 10 9 1253 586 275 20 25 chr6 87560182 87560380 -61956657 - Lx8 LINE L1 -211 7262 7066 9 1253 601 257 153 28 chr6 87560406 87560654 -61956383 - Lx8 LINE L1 -1459 6014 5736 9 1253 22 0 0 0 chr6 87560690 87560712 -61956325 + AT_rich Low_complexity Low_complexity 1 22 0 1 1253 195 42 0 0 chr6 87562230 87562254 -61954783 + (CCAA)n Simple_repeat Simple_repeat 1 24 0 1 1253 418 279 26 35 chr6 87563179 87563340 -61953697 - Lx7 LINE L1 -1632 5841 5671 1 1253 511 318 12 0 chr6 87563335 87563508 -61953529 + Lx7 LINE L1 5484 5658 -222 1 1253 368 40 0 20 chr6 87563569 87563620 -61953417 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 1 1253 721 268 181 60 chr6 87563639 87564323 -61952714 + BLACKJACK DNA AcHobo 2093 2859 -85 9 1253 825 140 0 0 chr6 87564616 87564759 -61952278 + B1_Mur4 SINE Alu 1 143 -7 1 1253 246 191 0 0 chr6 87566169 87566216 -61950821 - RSINE1 SINE B4 -116 49 3 1 1253 1137 261 75 12 chr6 87567533 87567867 -61949170 - MTE2b LTR MaLR -22 357 3 1 1253 891 269 48 25 chr6 87567872 87568226 -61948811 - MTE2b-int LTR MaLR -4 1576 1215 1 1253 2959 284 107 30 chr6 87568892 87570067 -61946970 - MTE2b-int LTR MaLR -308 1272 7 1 1253 387 0 0 0 chr6 87570068 87570111 -61946926 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1253 246 266 17 125 chr6 87570199 87570375 -61946662 + RMER15 LTR ERVL 3 159 -416 1 1253 1006 249 35 4 chr6 87570388 87570646 -61946391 + RMER15 LTR ERVL 306 571 -4 1 1253 852 294 42 4 chr6 87570668 87570931 -61946106 - MTE2b LTR MaLR -105 274 2 1 1253 396 0 0 0 chr6 87571081 87571125 -61945912 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1253 198 174 0 0 chr6 87571128 87571174 -61945863 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1253 23 33 0 0 chr6 87571176 87571206 -61945831 + AT_rich Low_complexity Low_complexity 1 30 0 1 1253 186 43 0 0 chr6 87572428 87572451 -61944586 + (CTGTG)n Simple_repeat Simple_repeat 1 23 0 1 1253 341 153 14 0 chr6 87572703 87572775 -61944262 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1253 3820 146 96 3 chr6 87573443 87574117 -61942920 + RMER19A LTR ERVK 1 737 0 1 1253 282 56 0 0 chr6 87574456 87574492 -61942545 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1 1253 404 292 136 19 chr6 87575079 87575337 -61941700 - L1M5 LINE L1 -2899 3247 2960 1 1253 566 252 115 51 chr6 87575479 87575696 -61941341 + MTE2b LTR MaLR 149 379 0 1 1253 379 224 20 82 chr6 87576255 87576364 -61940673 + Lx9 LINE L1 7508 7608 -36 1 1253 1532 196 31 80 chr6 87576364 87576753 -61940284 - ORR1D1 LTR MaLR -4 370 1 1 1253 379 224 20 82 chr6 87576753 87576789 -61940248 + Lx9 LINE L1 7609 7644 0 1 1253 775 177 57 0 chr6 87577008 87577149 -61939888 + B1_Mur3 SINE Alu 1 149 0 1 1253 260 336 131 0 chr6 87577172 87577279 -61939758 + B4A SINE B4 2 122 -170 1 1253 241 221 155 21 chr6 87577458 87577555 -61939482 - L1MB1 LINE L1 -135 6033 5924 1 1253 602 265 96 78 chr6 87577863 87578375 -61938662 + MT2A LTR ERVL 1 521 -12 1 1253 3029 47 8 40 chr6 87578594 87578995 -61938042 - RLTR10 LTR ERVK -2 388 1 1 1253 241 186 0 58 chr6 87579210 87579347 -61937690 + (CGGGG)n Simple_repeat Simple_repeat 5 133 0 1 1253 225 312 101 25 chr6 87581135 87581293 -61935744 - L4 LINE RTE -140 1889 1720 1 1253 21 57 0 0 chr6 87581730 87581765 -61935272 + AT_rich Low_complexity Low_complexity 1 35 0 1 1253 433 250 0 0 chr6 87582904 87582996 -61934041 - PB1D10 SINE Alu -8 109 18 1 1253 315 0 0 0 chr6 87583037 87583072 -61933965 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1253 945 252 29 8 chr6 87583082 87583326 -61933711 - MTD LTR MaLR -170 249 1 1 1253 237 222 95 0 chr6 87583668 87583731 -61933306 + ID4 SINE ID 2 70 -13 1 1253 330 220 0 0 chr6 87584935 87585035 -61932002 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1253 282 95 0 0 chr6 87585036 87585078 -61931959 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 1 1253 22 56 0 0 chr6 87585327 87585363 -61931674 + AT_rich Low_complexity Low_complexity 1 36 0 1 1253 422 284 10 0 chr6 87586433 87586552 -61930485 - B1F SINE Alu 0 120 1 1 1253 1037 109 6 0 chr6 87586587 87586743 -61930294 + B2_Mm2 SINE B2 1 157 -38 1 1253 189 0 0 0 chr6 87586743 87586764 -61930273 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1 1253 201 229 0 0 chr6 87587113 87587161 -61929876 + CT-rich Low_complexity Low_complexity 3 50 0 1 1253 315 0 0 0 chr6 87587161 87587196 -61929841 + (CCA)n Simple_repeat Simple_repeat 2 36 0 1 1253 241 256 115 11 chr6 87587209 87587296 -61929741 - B1F SINE Alu -51 98 3 1 1253 278 258 62 70 chr6 87587868 87587997 -61929040 + MER3 DNA MER1_type 81 208 -1 1 1253 201 147 0 0 chr6 87588834 87588868 -61928169 + (TCTCC)n Simple_repeat Simple_repeat 2 35 0 1 1253 299 246 0 14 chr6 87588876 87588950 -61928087 - ID4 SINE ID -3 80 8 1 1253 596 110 0 0 chr6 87589196 87589296 -61927741 + ORR1A3 LTR MaLR 1 100 -229 1 1253 1333 139 119 99 chr6 87589275 87589627 -61927410 + ORR1A3-int LTR MaLR 1151 1509 0 1 1253 1779 110 0 99 chr6 87589627 87589979 -61927058 + ORR1A3 LTR MaLR 1 317 -9 1 1253 607 247 103 111 chr6 87590521 87590890 -61926147 + L1MA4A LINE L1 4014 4379 -1764 1 1253 339 282 118 6 chr6 87591000 87591178 -61925859 + L1M5 LINE L1 2486 2683 -3463 1 1253 429 233 0 0 chr6 87593076 87593160 -61923877 - RSINE1 SINE B4 -60 105 22 1 1253 1466 177 162 33 chr6 87593160 87593523 -61923514 - MTD LTR MaLR 0 419 10 1 1253 331 303 46 0 chr6 87593633 87593742 -61923295 - Charlie1b DNA MER1_type -284 239 126 1 1253 384 290 28 0 chr6 87593756 87593863 -61923174 + L1MA4A LINE L1 5827 5936 -367 1 1253 858 143 13 45 chr6 87594053 87594207 -61922830 + B1_Mur2 SINE Alu 1 149 0 1 1253 262 43 42 21 chr6 87594210 87594258 -61922779 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 1 1253 27 0 0 0 chr6 87594286 87594313 -61922724 + AT_rich Low_complexity Low_complexity 1 27 0 1 1253 25 0 0 0 chr6 87594339 87594364 -61922673 + AT_rich Low_complexity Low_complexity 1 25 0 1 1253 238 360 109 40 chr6 87594788 87595138 -61921899 + MLT1A LTR MaLR 1 374 0 1 1253 520 192 175 8 chr6 87596388 87596514 -61920523 + B1_Mus1 SINE Alu 2 148 0 1 1253 27 29 0 0 chr6 87596514 87596548 -61920489 + AT_rich Low_complexity Low_complexity 1 34 0 1 1253 1009 112 0 7 chr6 87596812 87596956 -61920081 - B1_Mur2 SINE Alu -6 143 1 1 1253 1515 266 93 39 chr6 87597217 87597896 -61919141 + Lx8 LINE L1 6883 7473 0 1 1253 2127 156 143 67 chr6 87598967 87599462 -61917575 + RMER16 LTR ERVK 1 533 0 1 1253 485 330 81 11 chr6 87599465 87599726 -61917311 - B4A SINE B4 -13 279 1 1 1253 911 282 151 10 chr6 87599803 87600208 -61916829 + Lx9 LINE L1 6974 7435 -209 1 1253 23 0 0 0 chr6 87600336 87600359 -61916678 + AT_rich Low_complexity Low_complexity 1 23 0 1 1253 239 330 3 17 chr6 87600364 87600451 -61916586 + B1F1 SINE Alu 1 82 -232 1 1253 658 187 24 0 chr6 87600903 87601026 -61916011 + B1_Mur3 SINE Alu 1 126 -23 1 1253 508 255 62 56 chr6 87601133 87601295 -61915742 + Tigger12c DNA MER2_type 7 169 -565 1 1253 22 56 0 0 chr6 87603496 87603532 -61913505 + AT_rich Low_complexity Low_complexity 1 36 0 1 1253 619 268 13 98 chr6 87603999 87604235 -61912802 + B4A SINE B4 3 218 -74 1 1253 426 342 66 5 chr6 87605062 87605095 -61911942 - MER58A DNA MER1_type -4 220 188 1 1253 513 0 0 0 chr6 87605095 87605152 -61911885 + (GGGGA)n Simple_repeat Simple_repeat 4 60 0 1 1253 426 342 66 5 chr6 87605152 87605315 -61911722 - MER58A DNA MER1_type -37 187 13 1 1253 427 268 98 0 chr6 87605797 87605920 -61911117 + Tigger7 DNA MER2_type 79 213 -2278 1 1253 1172 69 7 0 chr6 87606899 87607044 -61909993 + B1_Mus2 SINE Alu 2 147 0 1 1253 277 266 21 47 chr6 87608206 87608322 -61908715 + PB1D10 SINE Alu 4 111 -38 1 1253 819 198 117 20 chr6 87609214 87609410 -61907627 + B3 SINE B2 2 216 0 1 1253 767 287 92 94 chr6 87609586 87610464 -61906573 - L1M4 LINE L1 -404 5774 4906 1 1253 5123 62 0 18 chr6 87610464 87611116 -61905921 + L1_Mus2 LINE L1 5927 6566 0 1 1253 498 281 83 116 chr6 87611116 87611348 -61905689 - L1M4 LINE L1 -1241 4905 4679 1 1253 21 57 0 0 chr6 87611451 87611486 -61905551 + AT_rich Low_complexity Low_complexity 1 35 0 1 1253 389 164 93 28 chr6 87611499 87611606 -61905431 - Lx7 LINE L1 0 7696 7583 1 1253 843 65 0 0 chr6 87612041 87612164 -61904873 + (TC)n Simple_repeat Simple_repeat 1 123 0 1 1253 246 307 156 38 chr6 87612285 87612471 -61904566 + MIR SINE MIR 1 208 -54 1 1253 396 0 0 0 chr6 87612789 87612833 -61904204 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1253 229 323 30 14 chr6 87615159 87615276 -61901761 - B4 SINE B4 -104 120 1 1 1253 1119 63 42 0 chr6 87615466 87615608 -61901429 + B1_Mus1 SINE Alu 1 148 0 1 1253 1113 196 19 10 chr6 87615818 87616024 -61901013 + B3 SINE B2 2 209 -7 1 1253 2373 65 0 0 chr6 87617091 87617385 -61899652 + L1_Mus1 LINE L1 6274 6567 0 1 1253 508 241 77 36 chr6 87617967 87618135 -61898902 - B4A SINE B4 -61 231 57 1 1253 23 0 0 0 chr6 87619553 87619576 -61897461 + AT_rich Low_complexity Low_complexity 1 23 0 1 1253 1645 31 0 5 chr6 87619576 87619769 -61897268 + B2_Mm1a SINE B2 2 193 0 1 1253 380 289 22 0 chr6 87620444 87620534 -61896503 + PB1D10 SINE Alu 18 109 -8 1 1253 346 341 109 23 chr6 87620829 87621003 -61896034 - B3A SINE B2 -3 195 7 1 1253 324 244 81 0 chr6 87621004 87621090 -61895947 - RMER30 DNA MER1_type -103 99 7 1 1253 189 229 154 62 chr6 87621113 87621178 -61895859 - L4 LINE RTE -1664 365 295 1 1253 217 312 148 7 chr6 87621174 87621316 -61895721 + MIR SINE MIR 69 230 -32 1 1253 1203 214 147 4 chr6 87623563 87623835 -61893202 - MTD LTR MaLR -108 311 1 1 1253 285 200 0 0 chr6 87627166 87627216 -61889821 + B1F SINE Alu 3 52 -97 1 1253 1214 120 0 0 chr6 87627218 87627385 -61889652 + B2_Mm2 SINE B2 2 168 -27 1 1253 31 44 0 0 chr6 87627543 87627588 -61889449 + AT_rich Low_complexity Low_complexity 1 45 0 1 1253 482 216 0 29 chr6 87627588 87627693 -61889344 + ID_B1 SINE B4 123 224 0 1 1253 207 348 116 0 chr6 87629555 87629667 -61887370 - MIR3 SINE MIR -54 154 30 1 1253 1776 137 104 60 chr6 87630704 87631069 -61885968 + ORR1C2 LTR MaLR 1 381 -3 2 1253 256 330 20 40 chr6 87631775 87631876 -61885161 + ID_B1 SINE B4 78 176 -48 2 1253 379 275 18 18 chr6 87631787 87631898 -61885139 + PB1D10 SINE Alu 5 115 -2 2 1253 233 209 29 15 chr6 87631898 87631966 -61885071 + ID4 SINE ID 2 70 -13 2 1253 3020 40 0 0 chr6 87632466 87632812 -61884225 - ORR1A1 LTR MaLR 0 346 1 2 1253 2332 48 0 20 chr6 87633387 87633682 -61883355 + L1_Mus1 LINE L1 6272 6560 -7 2 1253 837 29 0 0 chr6 87633683 87633787 -61883250 + (GAA)n Simple_repeat Simple_repeat 2 105 0 2 1253 320 311 127 71 chr6 87634075 87634272 -61882765 + RMER15 LTR ERVL 368 575 0 2 1253 342 233 70 104 chr6 87634384 87634410 -61882627 + B4 SINE B4 69 90 -202 2 1253 533 178 59 0 chr6 87634410 87634511 -61882526 + B1_Mur4 SINE Alu 1 107 -43 2 1253 588 294 79 35 chr6 87634534 87634788 -61882249 + L1M5 LINE L1 5125 5389 -757 2 1253 32 57 0 0 chr6 87634788 87634841 -61882196 + AT_rich Low_complexity Low_complexity 1 53 0 2 1253 415 284 128 27 chr6 87634841 87635098 -61881939 + L1M5 LINE L1 5417 5699 -745 2 1253 987 88 14 7 chr6 87635173 87635311 -61881726 + B1_Mm SINE Alu 2 140 -7 2 1253 243 88 0 0 chr6 87635313 87635347 -61881690 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1253 429 20 0 0 chr6 87635705 87635755 -61881282 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1253 630 276 27 7 chr6 87635761 87635907 -61881130 - RSINE1 SINE B4 -13 152 4 2 1253 36 40 0 0 chr6 87636012 87636062 -61880975 + AT_rich Low_complexity Low_complexity 1 50 0 2 1253 270 346 0 0 chr6 87636172 87636250 -61880787 + ID4_ SINE ID 5 82 -1 2 1253 806 194 7 7 chr6 87636260 87636405 -61880632 + B1_Mus2 SINE Alu 2 146 -1 2 1253 264 122 0 0 chr6 87636426 87636467 -61880570 + (TAA)n Simple_repeat Simple_repeat 2 42 0 2 1253 1141 151 75 5 chr6 87636850 87637050 -61879987 + B3 SINE B2 3 216 0 2 1253 634 225 120 0 chr6 87637077 87637219 -61879818 + B3A SINE B2 3 161 -37 2 1253 189 93 70 53 chr6 87637228 87637285 -61879752 + CT-rich Low_complexity Low_complexity 3 60 0 2 1253 475 271 0 0 chr6 87637367 87637463 -61879574 + RSINE1 SINE B4 45 140 -25 2 1253 459 35 0 0 chr6 87637470 87637527 -61879510 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1253 360 266 88 9 chr6 87637613 87637727 -61879310 + L1MC LINE L1 3049 3171 -2975 2 1253 740 145 8 0 chr6 87637744 87637875 -61879162 + GA-rich Low_complexity Low_complexity 1 132 0 2 1253 611 275 0 7 chr6 87638061 87638211 -61878826 + B1F2 SINE Alu 1 149 0 2 1253 217 303 65 13 chr6 87638251 87638328 -61878709 + ID4_ SINE ID 3 83 0 2 1253 409 236 238 20 chr6 87638330 87638477 -61878560 + L1M5 LINE L1 5024 5202 -944 2 1253 850 170 21 0 chr6 87638479 87638620 -61878417 + B1_Mur1 SINE Alu 3 146 -3 2 1253 243 339 119 20 chr6 87638701 87638866 -61878171 + L1M5 LINE L1 5366 5544 -696 2 1253 2778 145 6 40 chr6 87638866 87639347 -61877690 + RMER4A LTR ERVK 1 465 -1 2 1253 243 339 119 20 chr6 87639347 87639476 -61877561 + L1M5 LINE L1 5545 5689 -551 2 1253 361 148 71 39 chr6 87639763 87639918 -61877119 + (TTATA)n Simple_repeat Simple_repeat 1 160 0 2 1253 1475 217 44 19 chr6 87641408 87641775 -61875262 - MTEb LTR MaLR -3 376 1 2 1253 4519 254 102 23 chr6 87641777 87643239 -61873798 - MTEb-int LTR MaLR -2 1578 1 2 1253 1135 243 134 32 chr6 87643239 87643583 -61873454 - MTEb LTR MaLR 0 379 1 2 1253 733 147 78 0 chr6 87643583 87643699 -61873338 + B1_Mur3 SINE Alu 13 137 -12 2 1253 225 0 0 0 chr6 87643699 87643724 -61873313 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2 1253 375 307 129 52 chr6 87645454 87645725 -61871312 - L1M5 LINE L1 -839 5307 5016 2 1253 433 318 30 15 chr6 87645747 87645878 -61871159 + B1F SINE Alu 5 137 -12 2 1253 376 298 66 121 chr6 87646537 87646869 -61870168 + L1MD1 LINE L1 5920 6233 -9 2 1253 1170 188 14 14 chr6 87646882 87647098 -61869939 + B3 SINE B2 1 216 0 2 1253 180 0 0 0 chr6 87647515 87647535 -61869502 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1253 213 39 0 0 chr6 87647721 87647747 -61869290 + (CCA)n Simple_repeat Simple_repeat 1 26 0 2 1253 443 343 69 7 chr6 87647748 87647892 -61869145 - RSINE1 SINE B4 -10 155 3 2 1253 275 95 0 0 chr6 87650602 87650644 -61866393 + Lx7 LINE L1 6502 6543 -1153 2 1253 902 197 7 0 chr6 87650645 87650797 -61866240 + Lx6 LINE L1 6587 6739 -721 2 1253 2762 148 176 99 chr6 87650798 87651461 -61865576 + MERVL_2A-int LTR ERVL 4977 5690 -71 2 1253 339 203 0 51 chr6 87651465 87651543 -61865494 + ORR1A3-int LTR MaLR 566 639 -1324 2 1253 363 98 0 0 chr6 87651546 87651597 -61865440 + MERVL_2A-int LTR ERVL 5711 5761 0 2 1253 485 170 62 31 chr6 87651597 87651694 -61865343 + MT2A LTR ERVL 1 100 -433 2 1253 1048 116 7 0 chr6 87651722 87651869 -61865168 - B1_Mur4 SINE Alu -1 149 2 2 1253 4910 70 24 29 chr6 87651885 87652551 -61864486 - L1_Mus2 LINE L1 0 6566 5904 2 1253 1146 56 0 0 chr6 87652551 87652694 -61864343 + L1_Mus2 LINE L1 5763 5905 -733 2 1253 258 240 0 20 chr6 87652700 87652751 -61864286 + MT2A LTR ERVL 82 131 -402 2 1253 307 282 13 13 chr6 87652770 87652849 -61864188 + MT2A LTR ERVL 288 366 -218 2 1253 748 103 9 0 chr6 87652838 87652945 -61864092 + ORR1C1 LTR MaLR 277 384 0 2 1253 5717 241 35 24 chr6 87652948 87654300 -61862737 + ORR1C1-int LTR MaLR 5 1370 0 2 1253 958 244 20 63 chr6 87654300 87654710 -61862327 + ORR1C1 LTR MaLR 1 384 0 2 1253 355 135 27 0 chr6 87654710 87654784 -61862253 + Lx7 LINE L1 7621 7696 0 2 1253 373 245 18 28 chr6 87654849 87654958 -61862079 + PB1D10 SINE Alu 3 110 -7 2 1253 283 256 26 0 chr6 87654963 87655041 -61861996 + ID4_ SINE ID 2 81 -2 2 1253 208 315 67 11 chr6 87655160 87655250 -61861787 - MER5B DNA MER1_type -29 149 55 2 1253 239 277 78 21 chr6 87655280 87655383 -61861654 - MER3 DNA MER1_type -9 200 85 2 1253 239 202 215 0 chr6 87655672 87655751 -61861286 - MER20 DNA MER1_type -68 151 56 2 1253 293 290 90 0 chr6 87655869 87655969 -61861068 - MIRb SINE MIR -66 202 94 2 1253 358 296 128 0 chr6 87657048 87657173 -61859864 + MIRb SINE MIR 56 196 -72 2 1253 1367 199 72 53 chr6 87657499 87658057 -61858980 - RLTR12B LTR ERVK 0 528 1 2 1253 404 252 39 39 chr6 87658398 87658501 -61858536 + PB1D9 SINE Alu 1 103 -17 2 1253 897 193 0 4 chr6 87658503 87658749 -61858288 + GA-rich Low_complexity Low_complexity 1 244 0 2 1253 1134 32 133 48 chr6 87659790 87659955 -61857082 + B2_Mm2 SINE B2 2 180 -15 2 1253 298 270 95 0 chr6 87660011 87660085 -61856952 + B4 SINE B4 200 280 -12 2 1253 339 25 0 0 chr6 87660119 87660159 -61856878 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1253 1889 177 74 8 chr6 87660635 87660999 -61856038 - MTD LTR MaLR -12 407 20 2 1253 300 79 0 0 chr6 87661006 87661044 -61855993 + (GGA)n Simple_repeat Simple_repeat 1 38 0 2 1253 630 138 0 37 chr6 87661044 87661179 -61855858 + GA-rich Low_complexity Low_complexity 1 130 0 2 1253 549 273 68 38 chr6 87661296 87661646 -61855391 - RLTR12B LTR ERVK -246 322 11 2 1253 249 360 52 0 chr6 87662340 87662476 -61854561 - MER5A1 DNA MER1_type 0 166 24 2 1253 216 0 0 0 chr6 87663713 87663737 -61853300 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1253 563 267 0 88 chr6 87663772 87663920 -61853117 + B1F1 SINE Alu 7 141 -8 2 1253 1131 112 207 5 chr6 87664537 87664725 -61852312 + URR1A DNA MER1_type 1 226 0 2 1253 234 217 91 71 chr6 87665102 87665201 -61851836 + MTE-int LTR MaLR 875 975 -605 2 1253 451 217 115 42 chr6 87666170 87666266 -61850771 + PB1D10 SINE Alu 22 124 -3 2 1253 243 0 0 0 chr6 87666330 87666357 -61850680 + (CCA)n Simple_repeat Simple_repeat 1 27 0 2 1253 672 331 29 102 chr6 87666441 87666701 -61850336 - B4A SINE B4 0 292 42 2 1253 1041 110 0 7 chr6 87666701 87666847 -61850190 - B1_Mus1 SINE Alu -1 147 3 2 1253 672 331 29 102 chr6 87666847 87666899 -61850138 - B4A SINE B4 -251 41 3 2 1253 1044 213 19 23 chr6 87667458 87667674 -61849363 + URR1B DNA MER1_type 1 215 -10 2 1253 21 0 0 0 chr6 87668471 87668492 -61848545 + AT_rich Low_complexity Low_complexity 1 21 0 2 1253 408 125 0 0 chr6 87668710 87668774 -61848263 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1253 4541 62 2 8 chr6 87669279 87669911 -61847126 + MusHAL1 LINE L1 2028 2655 -57 2 1253 309 164 0 68 chr6 87669916 87669975 -61847062 + ORR1A3 LTR MaLR 272 326 0 2 1253 2285 139 26 13 chr6 87670063 87670441 -61846596 + ORR1B1 LTR MaLR 4 386 -8 2 1253 669 229 0 8 chr6 87670445 87670577 -61846460 + B1_Mur1 SINE Alu 19 149 0 2 1253 207 162 0 0 chr6 87670600 87670637 -61846400 + GA-rich Low_complexity Low_complexity 4 40 0 2 1253 311 317 86 9 chr6 87670658 87670763 -61846274 + L1M5 LINE L1 5535 5647 -477 2 1253 1214 168 22 35 chr6 87670779 87671007 -61846030 + RLTR28 LTR ERVL 1 225 -299 2 1253 675 308 97 0 chr6 87670931 87671158 -61845879 - MTE2b LTR MaLR -130 249 1 2 1253 348 202 9 28 chr6 87671503 87671610 -61845427 + GA-rich Low_complexity Low_complexity 3 107 0 2 1253 183 379 42 25 chr6 87673757 87673876 -61843161 - MIR SINE MIR -65 143 23 2 1253 233 29 29 0 chr6 87674521 87674555 -61842482 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1253 1121 80 0 0 chr6 87674555 87674693 -61842344 - B1_Mus2 SINE Alu -9 138 1 2 1253 516 140 0 0 chr6 87674780 87674887 -61842150 + (GA)n Simple_repeat Simple_repeat 2 108 0 2 1253 550 281 0 35 chr6 87675063 87675207 -61841830 + ID_B1 SINE B4 84 222 -2 2 1253 349 258 0 0 chr6 87675211 87675277 -61841760 + ID4_ SINE ID 7 72 -11 2 1253 261 287 74 11 chr6 87675612 87675707 -61841330 + MLT1G1 LTR MaLR 406 506 -73 2 1253 384 22 0 0 chr6 87677230 87677275 -61839762 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1253 342 152 0 0 chr6 87677277 87677336 -61839701 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1253 233 362 56 19 chr6 87677507 87677614 -61839423 + ORR1E LTR MaLR 1 111 -248 2 1253 1524 160 223 42 chr6 87677683 87678015 -61839022 - ORR1B1 LTR MaLR 0 394 3 2 1253 582 207 241 141 chr6 87678321 87678498 -61838539 - MTD LTR MaLR 0 419 202 3 1253 1185 48 7 20 chr6 87678498 87678647 -61838390 - B1_Mus2 SINE Alu 0 147 1 3 1253 582 207 241 141 chr6 87678647 87678739 -61838298 - MTD LTR MaLR -218 201 123 3 1253 1057 173 110 0 chr6 87679157 87679348 -61837689 - B3 SINE B2 -4 212 1 3 1253 386 338 56 60 chr6 87679348 87679581 -61837456 + L1MB8 LINE L1 5894 6125 -53 3 1253 27 0 0 0 chr6 87681368 87681395 -61835642 + GC_rich Low_complexity Low_complexity 1 27 0 3 1253 348 83 0 0 chr6 87682155 87682203 -61834834 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1253 347 288 66 71 chr6 87683218 87683416 -61833621 - MIRb SINE MIR -17 251 55 3 1253 180 316 49 37 chr6 87683371 87683453 -61833584 + MIRm SINE MIR 28 110 -166 3 1253 181 349 44 58 chr6 87683801 87683938 -61833099 - L2b LINE L2 -320 3055 2921 3 1253 250 45 45 0 chr6 87684022 87684066 -61832971 + (CAA)n Simple_repeat Simple_repeat 1 46 0 3 1253 288 274 243 14 chr6 87684498 87684646 -61832391 - MIRb SINE MIR -74 194 13 3 1253 2213 83 89 0 chr6 87684743 87685045 -61831992 - ORR1A4 LTR MaLR 0 329 1 3 1253 672 318 47 9 chr6 87686551 87686764 -61830273 + MER2 DNA MER2_type 123 343 -2 3 1254 262 370 39 23 chr6 87688626 87688756 -61828281 + MIRm SINE MIR 22 153 -123 3 1254 283 206 56 148 chr6 87688823 87688931 -61828106 + MIR SINE MIR 83 187 -81 3 1254 937 137 256 0 chr6 87690809 87690977 -61826060 + B3 SINE B2 3 213 -3 3 1254 540 197 96 96 chr6 87690993 87691139 -61825898 + B1_Mus1 SINE Alu 3 148 0 3 1254 502 289 158 21 chr6 87691465 87691744 -61825293 + MER58B DNA MER1_type 25 341 0 3 1254 405 0 0 0 chr6 87691966 87692011 -61825026 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1254 638 272 168 0 chr6 87692014 87692216 -61824821 + MER44B DNA MER2_type 21 256 -294 3 1254 1345 156 283 0 chr6 87692223 87692537 -61824500 + MTD LTR MaLR 4 406 -13 3 1254 246 329 0 0 chr6 87692567 87692646 -61824391 + MER44B DNA MER2_type 361 439 -111 3 1254 260 27 27 0 chr6 87692805 87692842 -61824195 + (TCC)n Simple_repeat Simple_repeat 1 38 0 3 1254 268 279 9 80 chr6 87693538 87693651 -61823386 - MLT1A LTR MaLR -228 146 42 3 1254 250 174 0 0 chr6 87693772 87693818 -61823219 + A-rich Low_complexity Low_complexity 1 46 0 3 1254 347 262 0 0 chr6 87693820 87693904 -61823133 + MER3 DNA MER1_type 122 205 -4 3 1254 615 309 70 33 chr6 87694431 87694496 -61822541 + MER20B DNA MER1_type 175 237 -546 3 1254 2223 119 276 34 chr6 87694496 87694967 -61822070 + RMER4B LTR ERVK 1 585 0 3 1254 615 309 70 33 chr6 87694967 87695145 -61821892 + MER20B DNA MER1_type 238 427 -356 3 1254 306 246 16 127 chr6 87695664 87695790 -61821247 + MER3 DNA MER1_type 21 132 -77 3 1254 1150 82 0 7 chr6 87695791 87695939 -61821098 + B1_Mus1 SINE Alu 2 148 0 3 1254 348 119 0 0 chr6 87695940 87695999 -61821038 + (A)n Simple_repeat Simple_repeat 1 59 0 3 1254 324 346 54 21 chr6 87696039 87696225 -61820812 - ORR1E LTR MaLR -154 205 14 3 1254 351 60 0 0 chr6 87696435 87696485 -61820552 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1254 286 236 56 0 chr6 87696494 87696566 -61820471 - ID4_ SINE ID -6 77 2 3 1254 696 228 14 0 chr6 87697756 87697901 -61819136 + MTD LTR MaLR 1 147 -272 3 1254 933 207 18 0 chr6 87697897 87698066 -61818971 + B3 SINE B2 45 216 0 3 1254 2628 104 12 124 chr6 87698408 87698925 -61818112 - RMER6B LTR ERVK -2 459 1 3 1254 290 279 93 54 chr6 87701333 87701462 -61815575 - L2a LINE L2 -2 3424 3291 3 1254 1406 85 0 6 chr6 87702237 87702415 -61814622 - B2_Mm2 SINE B2 -18 177 1 3 1254 1168 56 21 0 chr6 87702454 87702598 -61814439 + B1_Mm SINE Alu 1 147 0 3 1254 214 270 20 110 chr6 87702793 87702893 -61814144 + MIRb SINE MIR 40 130 -138 3 1254 560 81 11 0 chr6 87703419 87703506 -61813531 + (GGAA)n Simple_repeat Simple_repeat 4 91 0 3 1254 259 234 26 0 chr6 87703521 87703598 -61813439 + GA-rich Low_complexity Low_complexity 1 79 0 3 1254 968 143 19 0 chr6 87704385 87704539 -61812498 - URR1A DNA MER1_type 0 226 70 3 1254 1186 52 0 78 chr6 87705733 87705899 -61811138 + B2_Mm1a SINE B2 2 154 -39 3 1254 702 0 0 0 chr6 87705900 87705978 -61811059 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 3 1254 443 268 32 6 chr6 87706004 87706162 -61810875 + L1MCa LINE L1 271 432 -6076 3 1254 237 239 65 43 chr6 87706273 87706365 -61810672 + L1MCa LINE L1 464 557 -5951 3 1254 400 257 57 38 chr6 87706455 87706560 -61810477 - PB1 SINE Alu 0 127 21 3 1254 291 299 179 75 chr6 87706581 87707233 -61809804 + L1MCa LINE L1 682 1401 -5107 3 1254 527 266 0 0 chr6 87707247 87707356 -61809681 + PB1D10 SINE Alu 1 109 -8 3 1254 497 265 127 29 chr6 87707402 87707647 -61809390 + L1MCa LINE L1 1602 1870 -4638 3 1254 682 193 187 6 chr6 87708076 87708258 -61808779 + B3 SINE B2 1 215 -1 3 1254 1773 269 133 55 chr6 87708278 87708535 -61808502 + L1MCa LINE L1 2406 2669 -3652 3 1254 370 193 273 0 chr6 87708535 87708623 -61808414 + PB1D9 SINE Alu 3 114 -6 3 1254 1773 269 133 55 chr6 87708623 87709646 -61807391 + L1MCa LINE L1 2670 3787 -2534 3 1254 264 59 0 0 chr6 87709837 87709871 -61807166 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 3 1254 1238 35 0 20 chr6 87711488 87711635 -61805402 + B1_Mus2 SINE Alu 4 147 0 3 1254 238 211 146 10 chr6 87711991 87712087 -61804950 - Lx7 LINE L1 -23 7673 7565 3 1254 858 249 78 31 chr6 87712087 87712381 -61804656 - Lx7 LINE L1 -271 7425 7118 3 1254 417 290 60 84 chr6 87712788 87713157 -61803880 + RMER17C LTR ERVK 6 365 -45 3 1254 291 298 143 60 chr6 87713165 87713333 -61803704 + MLT1F1 LTR MaLR 387 568 -1 3 1254 180 111 0 0 chr6 87713672 87713699 -61803338 + (TAA)n Simple_repeat Simple_repeat 3 29 0 3 1254 426 240 9 57 chr6 87714221 87714240 -61802797 - PB1D10 SINE Alu 0 117 100 3 1254 2109 112 70 12 chr6 87714240 87714567 -61802470 - ORR1A1 LTR MaLR 0 346 1 3 1254 426 240 9 57 chr6 87714567 87714653 -61802384 - PB1D10 SINE Alu -18 99 17 3 1254 381 218 0 94 chr6 87714759 87714855 -61802182 - PB1D9 SINE Alu -8 112 26 3 1254 417 39 0 0 chr6 87714878 87714929 -61802108 + (T)n Simple_repeat Simple_repeat 1 51 0 3 1254 1906 262 29 61 chr6 87716263 87717116 -61799921 + L1_Rod LINE L1 3799 4624 -1223 3 1254 2765 86 7 14 chr6 87717215 87717628 -61799409 - MusHAL1 LINE L1 -1586 1126 717 3 1254 295 279 17 100 chr6 87717824 87718055 -61798982 + L1M2 LINE L1 3533 3744 -2399 3 1254 301 281 131 37 chr6 87718073 87718180 -61798857 + PB1D10 SINE Alu 1 117 0 3 1254 900 296 86 17 chr6 87718202 87718608 -61798429 + L1M2 LINE L1 3808 4241 -1902 3 1254 1206 109 29 0 chr6 87718633 87718808 -61798229 + B2_Mm2 SINE B2 2 181 -14 3 1254 27 29 0 0 chr6 87718856 87718890 -61798147 + AT_rich Low_complexity Low_complexity 1 34 0 3 1254 778 192 7 33 chr6 87718933 87719084 -61797953 + B1_Mur2 SINE Alu 1 147 -2 3 1254 204 67 128 43 chr6 87719162 87719209 -61797828 + (ACCTG)n Simple_repeat Simple_repeat 4 54 0 3 1254 253 163 0 0 chr6 87719277 87719320 -61797717 - Ricksha_c DNA MuDR -1141 907 865 3 1254 248 0 31 0 chr6 87719329 87719361 -61797676 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 3 1254 357 24 0 0 chr6 87719364 87719406 -61797631 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 3 1254 4426 123 1 14 chr6 87719504 87720162 -61796875 + Lx4A LINE L1 6405 7054 -4 3 1254 396 167 0 0 chr6 87720163 87720235 -61796802 + (CGAA)n Simple_repeat Simple_repeat 2 73 0 3 1254 276 252 123 103 chr6 87720429 87720575 -61796462 + B4 SINE B4 142 290 -2 3 1254 767 241 0 0 chr6 87721102 87721243 -61795794 + ID_B1 SINE B4 82 222 -2 3 1254 242 344 52 52 chr6 87721122 87721254 -61795783 - YREP_Mm Unknown Unknown -1516 296 165 3 1254 210 241 19 0 chr6 87721254 87721308 -61795729 + B3A SINE B2 1 55 -143 3 1254 399 208 30 50 chr6 87721324 87721425 -61795612 + B1_Mur1 SINE Alu 51 149 0 3 1254 366 159 0 0 chr6 87721447 87721516 -61795521 + GA-rich Low_complexity Low_complexity 4 72 0 3 1254 443 245 151 33 chr6 87721522 87721674 -61795363 + B3A SINE B2 29 198 0 3 1254 491 197 116 16 chr6 87722104 87722233 -61794804 + B1_Mus2 SINE Alu 1 142 -5 3 1254 570 15 0 0 chr6 87722270 87722337 -61794700 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 3 1254 714 111 314 10 chr6 87722349 87722547 -61794490 - Lx4B LINE L1 -46 7012 6658 3 1254 614 188 0 33 chr6 87722547 87722668 -61794369 - B1_Mus1 SINE Alu 0 148 32 3 1254 732 147 93 22 chr6 87722865 87723004 -61794033 + B1_Mur3 SINE Alu 1 149 0 3 1254 446 82 840 9 chr6 87723007 87723113 -61793924 + B2_Mm2 SINE B2 2 195 0 3 1254 874 189 97 0 chr6 87723294 87723469 -61793568 + B3 SINE B2 20 211 -5 3 1254 32 0 0 0 chr6 87723481 87723513 -61793524 + AT_rich Low_complexity Low_complexity 1 32 0 3 1254 373 191 0 56 chr6 87723647 87723719 -61793318 - B1_Mur4 SINE Alu -82 68 1 3 1254 328 203 0 92 chr6 87723654 87723730 -61793307 - ID_B1 SINE B4 -83 141 73 3 1254 492 310 30 48 chr6 87723741 87723907 -61793130 + RSINE1 SINE B4 3 165 0 3 1254 809 153 24 17 chr6 87723910 87724203 -61792834 + (CATA)n Simple_repeat Simple_repeat 1 294 0 3 1254 321 304 33 0 chr6 87724204 87724296 -61792741 + HAL1-3A_ME LINE L1 1976 2070 -788 3 1254 589 235 116 12 chr6 87724337 87724509 -61792528 + B3 SINE B2 27 216 0 3 1254 285 222 7 204 chr6 87724513 87724583 -61792454 + L1M2 LINE L1 4583 4646 -1497 3 1254 1049 200 29 5 chr6 87724583 87724789 -61792248 + B3 SINE B2 1 211 -5 3 1254 285 222 7 204 chr6 87724789 87724865 -61792172 + L1M2 LINE L1 4647 4700 -1443 3 1254 555 226 0 0 chr6 87724908 87725010 -61792027 + ID_B1 SINE B4 86 187 -37 3 1254 408 286 24 56 chr6 87725010 87725030 -61792007 + B1F SINE Alu 5 122 -27 3 1254 395 0 0 163 chr6 87725217 87725648 -61791389 + (CAGAG)n Simple_repeat Simple_repeat 1 360 0 3 1254 207 0 315 0 chr6 87725610 87725718 -61791319 + (CAGG)n Simple_repeat Simple_repeat 2 143 0 3 1254 597 125 10 20 chr6 87725723 87725821 -61791216 + B1_Mus2 SINE Alu 42 138 -9 3 1254 242 250 0 132 chr6 87725727 87725833 -61791204 + RLTR25A LTR ERVK 522 613 -490 4 1254 180 111 0 0 chr6 87726425 87726452 -61790585 + (CTG)n Simple_repeat Simple_repeat 3 29 0 4 1254 212 281 31 0 chr6 87728488 87728552 -61788485 + MIRb SINE MIR 63 128 -140 4 1254 551 53 13 0 chr6 87730309 87730384 -61786653 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 1254 376 257 40 24 chr6 87730658 87730772 -61786265 + PB1D9 SINE Alu 14 144 -5 4 1254 227 314 21 28 chr6 87731037 87731178 -61785859 + ORR1C2 LTR MaLR 2 141 -243 4 1254 896 184 31 20 chr6 87731235 87731415 -61785622 + B3 SINE B2 30 208 -8 4 1254 1222 43 0 0 chr6 87731437 87731578 -61785459 + B1_Mus1 SINE Alu 2 142 -6 4 1254 267 31 0 0 chr6 87731579 87731611 -61785426 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1254 180 0 0 0 chr6 87731630 87731650 -61785387 + (TTA)n Simple_repeat Simple_repeat 3 22 0 4 1254 1483 34 0 11 chr6 87731656 87731834 -61785203 - B2_Mm2 SINE B2 -18 177 2 4 1254 1822 190 3 53 chr6 87731912 87732031 -61785006 + ORR1B2 LTR MaLR 1 108 -259 4 1254 1401 64 6 0 chr6 87732031 87732204 -61784833 + B2_Mm1a SINE B2 1 174 -19 4 1254 1822 190 3 53 chr6 87732204 87732462 -61784575 + ORR1B2 LTR MaLR 109 359 -8 4 1254 4208 108 36 6 chr6 87732512 87733174 -61783863 - Lx3B LINE L1 -1210 5763 5083 4 1254 6484 84 2 10 chr6 87733164 87734074 -61782963 + L1_Mus3 LINE L1 5736 6638 0 4 1254 481 266 34 40 chr6 87734758 87734907 -61782130 - ID_B1 SINE B4 0 224 77 4 1254 212 171 0 0 chr6 87734910 87734951 -61782086 + (TATAA)n Simple_repeat Simple_repeat 1 41 0 4 1254 1258 94 20 40 chr6 87734959 87735158 -61781879 - B2_Mm2 SINE B2 0 195 1 4 1254 519 299 126 0 chr6 87735475 87735649 -61781388 + Lx8 LINE L1 6836 7031 -442 4 1254 698 224 0 0 chr6 87735649 87735765 -61781272 + RLTR21 LTR ERVK 1 116 -1456 4 1254 1657 197 80 35 chr6 87735765 87736218 -61780819 + Lx7 LINE L1 7224 7696 0 4 1254 1174 52 0 0 chr6 87736233 87736369 -61780668 + B1_Mus1 SINE Alu 1 136 -12 4 1254 414 0 0 0 chr6 87736370 87736416 -61780621 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 1254 352 75 113 0 chr6 87736417 87736470 -61780567 + B3 SINE B2 31 89 -127 4 1254 346 264 22 11 chr6 87736563 87736655 -61780382 + B3 SINE B2 1 93 -123 4 1254 23 54 0 0 chr6 87736657 87736694 -61780343 + AT_rich Low_complexity Low_complexity 1 37 0 4 1254 263 259 35 0 chr6 87736729 87736787 -61780250 - MER5A1 DNA MER1_type -75 91 32 4 1254 620 186 50 8 chr6 87736968 87737087 -61779950 + B1_Mur3 SINE Alu 3 126 -23 4 1254 216 330 24 94 chr6 87738218 87738345 -61778692 - MIRm SINE MIR -128 148 31 4 1254 202 273 86 57 chr6 87738542 87738647 -61778390 + L2 LINE L2 2464 2571 -848 4 1254 1080 158 66 9 chr6 87740205 87740416 -61776621 - URR1B DNA MER1_type -2 223 1 4 1254 270 179 157 43 chr6 87741041 87741111 -61775926 - URR1B DNA MER1_type -141 84 7 4 1254 307 271 0 0 chr6 87741663 87741733 -61775304 - ID2 SINE ID -1 82 13 4 1254 329 254 0 0 chr6 87741671 87741738 -61775299 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 4 1254 307 271 0 0 chr6 87741754 87741824 -61775213 - ID2 SINE ID -1 82 13 4 1254 329 254 0 0 chr6 87741762 87741829 -61775208 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 4 1254 351 291 91 64 chr6 87742989 87743176 -61773861 - B3A SINE B2 -4 194 3 4 1254 676 192 77 0 chr6 87743201 87743331 -61773706 - B1_Mur3 SINE Alu -6 143 4 4 1254 722 184 7 41 chr6 87743363 87743510 -61773527 + B1_Mur3 SINE Alu 1 142 -7 4 1254 329 300 71 18 chr6 87743541 87743653 -61773384 - PB1 SINE Alu -9 118 1 4 1254 555 285 65 19 chr6 87743680 87743834 -61773203 + RSINE1 SINE B4 5 165 0 4 1254 231 88 0 0 chr6 87743844 87743878 -61773159 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 4 1254 202 292 0 0 chr6 87743879 87743927 -61773110 + (TAGG)n Simple_repeat Simple_repeat 4 51 0 4 1254 201 74 0 0 chr6 87743928 87743955 -61773082 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1254 542 297 12 42 chr6 87743975 87744140 -61772897 + RSINE1 SINE B4 4 163 -2 4 1254 296 258 14 14 chr6 87744197 87744292 -61772745 - ID4 SINE ID -45 107 16 4 1254 659 293 55 25 chr6 87744939 87745177 -61771860 + B4A SINE B4 6 250 -42 4 1254 750 58 0 0 chr6 87745178 87745282 -61771755 + (GA)n Simple_repeat Simple_repeat 1 104 0 4 1254 180 180 182 76 chr6 87745643 87745709 -61771328 - L2a LINE L2 -5 3421 3349 4 1254 309 254 57 57 chr6 87745738 87745863 -61771174 + L1MEc LINE L1 1306 1524 -4891 4 1254 266 276 77 26 chr6 87746056 87746134 -61770903 - ID4_ SINE ID 0 83 2 4 1254 480 218 0 0 chr6 87746229 87746408 -61770629 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1254 295 281 85 34 chr6 87746432 87746550 -61770487 + L2a LINE L2 3285 3408 -18 4 1254 243 0 0 0 chr6 87747333 87747360 -61769677 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1254 495 0 0 0 chr6 87747360 87747414 -61769623 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1254 2544 159 10 0 chr6 87748970 87749360 -61767677 + ORR1B1 LTR MaLR 1 394 0 4 1254 673 240 62 34 chr6 87749890 87750067 -61766970 - ID_B1 SINE B4 0 224 43 4 1254 234 0 0 0 chr6 87750563 87750589 -61766448 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 1254 210 291 49 25 chr6 87751826 87751907 -61765130 - BC1_Mm scRNA scRNA -65 87 5 4 1254 244 239 66 66 chr6 87752238 87752314 -61764723 + ID4_ SINE ID 4 79 -4 4 1254 25 0 0 0 chr6 87752510 87752535 -61764502 + GC_rich Low_complexity Low_complexity 1 25 0 4 1254 324 304 70 31 chr6 87752556 87752685 -61764352 + ORR1E LTR MaLR 1 134 -225 4 1254 302 0 0 26 chr6 87752685 87752724 -61764313 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1254 686 154 68 0 chr6 87752749 87752866 -61764171 - B3 SINE B2 -86 130 6 4 1254 306 0 0 0 chr6 87752889 87752923 -61764114 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1254 1194 63 0 0 chr6 87753097 87753239 -61763798 + B1_Mus1 SINE Alu 2 143 -5 4 1254 192 77 0 0 chr6 87753239 87753265 -61763772 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1254 861 210 75 0 chr6 87753274 87753474 -61763563 + B3 SINE B2 2 216 0 4 1254 772 217 0 20 chr6 87753493 87753639 -61763398 + B1_Mur3 SINE Alu 1 143 -6 4 1254 218 274 164 0 chr6 87753771 87753844 -61763193 - BC1_Mm scRNA scRNA -63 89 5 4 1254 24 32 0 0 chr6 87753884 87753915 -61763122 + AT_rich Low_complexity Low_complexity 1 31 0 4 1254 580 258 73 0 chr6 87753915 87754039 -61762998 - RSINE1 SINE B4 -31 134 2 4 1254 330 286 0 13 chr6 87754055 87754133 -61762904 - PB1D10 SINE Alu -37 80 4 4 1254 490 254 53 0 chr6 87754202 87754316 -61762721 + PB1 SINE Alu 1 120 -7 4 1254 578 187 0 53 chr6 87754319 87754432 -61762605 + PB1D9 SINE Alu 1 107 -13 4 1254 228 111 0 0 chr6 87754435 87754471 -61762566 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 4 1254 237 98 0 0 chr6 87754476 87754517 -61762520 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 1254 246 329 0 45 chr6 87754531 87754620 -61762417 - MARNA DNA Mariner -14 572 488 4 1254 213 238 24 0 chr6 87754854 87754896 -61762141 + ID4_ SINE ID 32 74 -9 4 1254 374 282 105 0 chr6 87754997 87755121 -61761916 + B1F1 SINE Alu 2 138 -11 4 1254 27 49 0 0 chr6 87755439 87755480 -61761557 + AT_rich Low_complexity Low_complexity 1 41 0 4 1254 948 152 41 0 chr6 87755491 87755636 -61761401 - RSINE1 SINE B4 -13 152 2 4 1254 306 0 0 0 chr6 87755814 87755848 -61761189 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1254 397 308 29 0 chr6 87755973 87756077 -61760960 + PB1D10 SINE Alu 1 107 -10 4 1254 213 39 0 0 chr6 87756077 87756103 -61760934 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4 1254 436 122 12 12 chr6 87756343 87756426 -61760611 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1254 738 23 0 0 chr6 87756426 87756514 -61760523 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 1254 284 270 0 13 chr6 87756761 87756836 -61760201 + ID4 SINE ID 2 75 -8 4 1254 258 106 0 0 chr6 87756840 87756887 -61760150 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 4 1254 602 245 84 0 chr6 87757533 87757676 -61759361 + RSINE1 SINE B4 3 157 -8 4 1254 212 321 125 62 chr6 87757542 87757718 -61759319 + B3A SINE B2 11 197 -1 4 1254 21 0 0 0 chr6 87757755 87757776 -61759261 + AT_rich Low_complexity Low_complexity 1 21 0 4 1254 186 227 13 120 chr6 87757792 87757867 -61759170 - MIRb SINE MIR -87 181 115 4 1254 412 242 242 0 chr6 87758134 87758254 -61758783 - RSINE1 SINE B4 -13 152 4 4 1254 563 244 31 54 chr6 87758338 87758354 -61758683 + ID SINE ID 63 75 -149 4 1254 394 328 31 23 chr6 87758354 87758482 -61758555 + B1F SINE Alu 1 129 -20 4 1254 282 95 0 0 chr6 87758516 87758558 -61758479 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1254 281 314 16 62 chr6 87758673 87758802 -61758235 + MIRc SINE MIR 21 143 -125 4 1254 207 322 91 25 chr6 87758966 87759087 -61757950 - L2a LINE L2 -260 3166 3038 4 1254 213 121 0 0 chr6 87761682 87761715 -61755322 + (CTCCG)n Simple_repeat Simple_repeat 1 33 0 4 1254 222 337 35 0 chr6 87762987 87763073 -61753964 - L2a LINE L2 -5 3421 3333 5 1254 596 257 35 0 chr6 87763660 87763804 -61753233 + B1F1 SINE Alu 1 149 0 5 1254 821 294 41 30 chr6 87763864 87764134 -61752903 + B4A SINE B4 2 274 -18 5 1254 300 53 0 0 chr6 87764162 87764200 -61752837 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1254 663 196 95 80 chr6 87764456 87764662 -61752375 - B3A SINE B2 -10 188 2 5 1254 589 126 95 0 chr6 87764708 87764803 -61752234 + B1_Mus1 SINE Alu 3 106 -42 5 1254 239 193 153 18 chr6 87765261 87765372 -61751665 + RMER17A LTR ERVK 344 469 -282 5 1254 1453 151 4 4 chr6 87765884 87766110 -61750927 - MTC LTR MaLR 0 421 196 5 1254 204 158 0 0 chr6 87766131 87766169 -61750868 + CT-rich Low_complexity Low_complexity 2 39 0 5 1254 824 186 20 7 chr6 87766197 87766343 -61750694 - B1_Mus1 SINE Alu 0 148 1 5 1254 1137 128 90 5 chr6 87766350 87766539 -61750498 - MTC LTR MaLR -216 205 1 5 1254 2269 126 58 11 chr6 87766703 87767079 -61749958 + ORR1B1 LTR MaLR 1 394 0 5 1254 1150 69 0 7 chr6 87769718 87769864 -61747173 + B1_Mm SINE Alu 1 145 -2 5 1254 485 217 17 34 chr6 87769893 87770012 -61747025 + PB1D7 SINE Alu 1 117 -3 5 1254 219 250 0 0 chr6 87770048 87770096 -61746941 + PB1 SINE Alu 78 125 -2 5 1254 1337 87 66 0 chr6 87770182 87770365 -61746672 + B2_Mm2 SINE B2 1 195 0 5 1254 1387 41 6 6 chr6 87771046 87771212 -61745825 + B2_Mm1a SINE B2 2 168 -25 5 1254 225 108 0 0 chr6 87771212 87771249 -61745788 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1254 219 69 0 0 chr6 87771531 87771560 -61745477 + (TCC)n Simple_repeat Simple_repeat 3 31 0 5 1254 809 240 64 10 chr6 87773238 87773440 -61743597 + B3 SINE B2 1 213 -3 5 1254 402 209 12 38 chr6 87773527 87773644 -61743393 + B1F SINE Alu 1 146 -3 5 1254 465 337 70 77 chr6 87773668 87773954 -61743083 + B4 SINE B4 9 292 0 5 1254 216 262 0 71 chr6 87774100 87774170 -61742867 - ID4 SINE ID 0 83 19 5 1254 250 290 9 99 chr6 87774632 87774743 -61742294 + PB1 SINE Alu 27 127 0 5 1254 339 284 0 0 chr6 87774774 87774855 -61742182 + ID2 SINE ID 2 82 -1 5 1254 231 329 43 0 chr6 87774992 87775062 -61741975 + B4A SINE B4 70 142 -150 5 1254 271 329 0 37 chr6 87775010 87775092 -61741945 + PB1D10 SINE Alu 6 84 -33 5 1254 409 219 47 199 chr6 87775636 87775807 -61741230 + ID_B1 SINE B4 8 152 -72 5 1254 509 268 0 18 chr6 87775785 87775899 -61741138 + RSINE1 SINE B4 44 155 -10 5 1254 201 74 0 0 chr6 87775900 87775927 -61741110 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 5 1254 1363 90 26 5 chr6 87775950 87776139 -61740898 + B2_Mm2 SINE B2 3 195 0 5 1254 1102 102 17 46 chr6 87776146 87776320 -61740717 + B2_Mm2 SINE B2 27 195 0 5 1254 318 274 34 34 chr6 87776405 87776522 -61740515 + PB1D10 SINE Alu 1 117 0 5 1254 708 238 138 17 chr6 87776582 87776772 -61740265 + ID_B1 SINE B4 30 237 -55 5 1254 232 254 0 0 chr6 87776810 87776877 -61740160 + A-rich Low_complexity Low_complexity 1 67 0 5 1254 550 237 22 138 chr6 87776948 87777129 -61739908 + B3A SINE B2 1 160 -38 5 1254 466 144 0 109 chr6 87777128 87777144 -61739893 + B1_Mur2 SINE Alu 59 73 -76 5 1254 180 0 0 0 chr6 87777144 87777164 -61739873 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1254 525 44 0 0 chr6 87777164 87777231 -61739806 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1254 466 144 0 109 chr6 87777231 87777314 -61739723 + B1_Mur2 SINE Alu 74 147 -2 5 1254 588 155 16 65 chr6 87777851 87777975 -61739062 + PB1D9 SINE Alu 2 119 -1 5 1254 1227 54 0 0 chr6 87778087 87778234 -61738803 + B1_Mm SINE Alu 1 147 0 5 1254 1371 93 49 0 chr6 87778251 87778434 -61738603 + B2_Mm2 SINE B2 2 193 -2 5 1254 636 128 128 0 chr6 87778453 87778570 -61738467 + B1_Mm SINE Alu 10 141 -6 5 1254 766 213 11 45 chr6 87779063 87779240 -61737797 + B3A SINE B2 6 176 -22 5 1254 852 104 0 0 chr6 87779250 87779375 -61737662 + (GGAA)n Simple_repeat Simple_repeat 2 126 0 5 1254 1343 100 0 6 chr6 87779375 87779556 -61737481 + B2_Mm2 SINE B2 2 181 -14 5 1254 346 298 74 8 chr6 87779577 87779627 -61737410 + B4A SINE B4 27 84 -208 5 1254 433 198 0 0 chr6 87779627 87779708 -61737329 + B1F SINE Alu 1 81 -68 5 1254 217 289 0 0 chr6 87779712 87779757 -61737280 + polypurine Low_complexity Low_complexity 1 45 0 5 1254 300 263 51 29 chr6 87779761 87779898 -61737139 - L1MD LINE L1 -1596 4550 4411 5 1254 233 227 119 15 chr6 87779898 87779965 -61737072 + ID4_ SINE ID 3 76 -7 5 1254 781 220 15 45 chr6 87780016 87780216 -61736821 - B3A SINE B2 -3 195 2 5 1254 227 231 0 8 chr6 87780216 87780288 -61736749 + T-rich Low_complexity Low_complexity 1 71 0 5 1254 496 165 80 27 chr6 87780290 87780402 -61736635 - B1_Mm SINE Alu -1 146 29 5 1254 264 289 0 37 chr6 87780598 87780706 -61736331 - L1M4 LINE L1 -3345 2801 2698 5 1254 4856 209 96 46 chr6 87780712 87781166 -61735871 + Lx6 LINE L1 5996 6505 -955 5 1254 1360 105 16 0 chr6 87781166 87781356 -61735681 + B2_Mm2 SINE B2 3 195 0 5 1254 4856 209 96 46 chr6 87781356 87781787 -61735250 + Lx6 LINE L1 6506 6945 -515 5 1254 894 154 7 0 chr6 87781787 87781930 -61735107 + B1_Mus1 SINE Alu 5 148 0 5 1254 4856 209 96 46 chr6 87781930 87782265 -61734772 + Lx6 LINE L1 6946 7278 -182 5 1254 277 311 19 9 chr6 87782344 87782451 -61734586 + Lx7 LINE L1 7199 7306 -390 5 1254 1498 48 0 36 chr6 87782630 87782824 -61734213 + B2_Mm2 SINE B2 3 189 -6 5 1254 1645 37 0 0 chr6 87782830 87783019 -61734018 + B2_Mm1a SINE B2 1 189 -4 5 1254 22 0 0 0 chr6 87783025 87783047 -61733990 + AT_rich Low_complexity Low_complexity 1 22 0 5 1254 1571 38 22 0 chr6 87783051 87783236 -61733801 + B2_Mm1a SINE B2 1 189 -4 5 1254 23 0 0 0 chr6 87783295 87783318 -61733719 + AT_rich Low_complexity Low_complexity 1 23 0 5 1254 452 239 31 107 chr6 87783747 87783767 -61733270 + B4A SINE B4 77 221 -69 5 1254 655 241 7 0 chr6 87783767 87783904 -61733133 + B1_Mur1 SINE Alu 6 143 -6 5 1254 848 100 138 0 chr6 87783909 87784039 -61732998 + B1_Mur4 SINE Alu 3 150 0 5 1254 1196 34 7 7 chr6 87784040 87784187 -61732850 + B1_Mm SINE Alu 1 147 0 5 1254 181 85 85 0 chr6 87784187 87784234 -61732803 + A-rich Low_complexity Low_complexity 6 56 0 5 1254 538 168 84 0 chr6 87784234 87784353 -61732684 + B1_Mur3 SINE Alu 21 149 0 5 1254 21 36 0 0 chr6 87784702 87784730 -61732307 + AT_rich Low_complexity Low_complexity 1 28 0 5 1254 1465 78 5 0 chr6 87785257 87785449 -61731588 + B2_Mm1t SINE B2 1 193 0 5 1254 420 244 165 38 chr6 87785830 87785988 -61731049 - B3A SINE B2 -19 179 2 5 1254 1763 233 25 53 chr6 87786039 87786738 -61730299 + RMER19C LTR ERVK 6 901 -1 5 1254 634 219 27 20 chr6 87786749 87786898 -61730139 - B1_Mur4 SINE Alu 0 150 1 5 1254 699 212 141 0 chr6 87787976 87788160 -61728877 - B3 SINE B2 -2 214 5 5 1254 1067 36 0 0 chr6 87789395 87789533 -61727504 + B1_Mus2 SINE Alu 9 146 -1 5 1254 25 0 0 0 chr6 87789533 87789558 -61727479 + AT_rich Low_complexity Low_complexity 1 25 0 5 1254 540 243 7 21 chr6 87789568 87789711 -61727326 + B1_Mur1 SINE Alu 2 142 -7 5 1254 296 168 233 19 chr6 87789727 87789830 -61727207 + B1_Mus2 SINE Alu 23 147 0 5 1254 488 200 57 24 chr6 87790951 87791074 -61725963 - ID_B1 SINE B4 -5 219 93 5 1254 317 288 54 9 chr6 87791116 87791228 -61725809 - PB1D10 SINE Alu 0 117 1 5 1254 334 330 101 0 chr6 87791247 87791356 -61725681 + RSINE1 SINE B4 32 151 -14 5 1254 279 135 38 19 chr6 87791618 87791671 -61725366 - B2_Mm2 SINE B2 -94 101 48 5 1254 845 151 44 0 chr6 87791701 87791860 -61725177 - B2_Mm1t SINE B2 -26 167 2 5 1254 1070 68 0 46 chr6 87791939 87792092 -61724945 + B1_Mus1 SINE Alu 2 147 -1 5 1254 245 210 0 0 chr6 87792243 87792296 -61724741 - PB1D10 SINE Alu -2 125 65 5 1254 498 312 26 36 chr6 87792377 87792570 -61724467 - B3 SINE B2 -23 193 3 5 1254 286 236 50 76 chr6 87792596 87792715 -61724322 - PB1D9 SINE Alu 0 120 5 5 1254 345 47 0 0 chr6 87796001 87796044 -61720993 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1254 414 244 196 17 chr6 87796946 87797125 -61719912 + B3 SINE B2 3 213 -3 5 1254 286 232 58 0 chr6 87797336 87797405 -61719632 + ID SINE ID 2 74 -150 5 1254 665 146 123 0 chr6 87797806 87797936 -61719101 - B1_Mus2 SINE Alu 0 147 2 5 1254 274 283 55 36 chr6 87798702 87798812 -61718225 - PB1D7 SINE Alu -8 112 1 5 1254 661 221 8 15 chr6 87802024 87802157 -61714880 + B1_Mur1 SINE Alu 1 132 -17 5 1254 252 77 0 0 chr6 87802268 87802307 -61714730 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1254 432 304 61 0 chr6 87802314 87802462 -61714575 + B3A SINE B2 27 183 -15 5 1254 406 185 24 24 chr6 87802481 87802564 -61714473 - B1_Mur2 SINE Alu -6 143 61 5 1254 516 241 27 0 chr6 87802685 87802797 -61714240 - PB1D9 SINE Alu 0 120 6 5 1254 189 0 0 0 chr6 87803114 87803135 -61713902 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1254 368 363 12 54 chr6 87803157 87803323 -61713714 + RSINE1 SINE B4 3 161 -4 5 1254 24 32 0 0 chr6 87803336 87803367 -61713670 + AT_rich Low_complexity Low_complexity 1 31 0 6 1254 291 312 72 0 chr6 87803875 87804013 -61713024 + B1F2 SINE Alu 2 149 0 6 1254 271 289 266 0 chr6 87804025 87804153 -61712884 + B3A SINE B2 11 172 -26 6 1254 345 100 0 0 chr6 87804157 87804207 -61712830 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1254 1223 41 7 0 chr6 87804217 87804362 -61712675 + B1_Mus2 SINE Alu 1 146 -1 6 1254 347 143 60 14 chr6 87804556 87804641 -61712396 - B1_Mur1 SINE Alu -19 131 41 6 1254 23 0 0 0 chr6 87804754 87804777 -61712260 + AT_rich Low_complexity Low_complexity 1 23 0 6 1254 583 181 133 8 chr6 87804777 87804905 -61712132 - B1_Mur1 SINE Alu -3 146 3 6 1254 538 273 28 7 chr6 87804911 87805055 -61711982 - ID_B1 SINE B4 -2 222 76 6 1254 1662 21 0 0 chr6 87805159 87805345 -61711692 + B2_Mm1a SINE B2 2 187 -6 6 1254 607 138 0 0 chr6 87805368 87805462 -61711575 + B1_Mur4 SINE Alu 43 136 -14 6 1254 210 216 0 0 chr6 87805466 87805503 -61711534 + polypurine Low_complexity Low_complexity 3 39 0 6 1254 471 254 90 79 chr6 87805505 87805783 -61711254 - L1MD1 LINE L1 -305 5937 5657 6 1254 275 290 101 0 chr6 87805794 87805932 -61711105 - L1M5 LINE L1 -742 5431 5280 6 1254 504 86 0 0 chr6 87805943 87806013 -61711024 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 6 1254 1264 34 0 0 chr6 87806037 87806183 -61710854 - B1_Mus2 SINE Alu 0 147 2 6 1254 268 230 50 27 chr6 87806248 87806351 -61710686 - RSINE1 SINE B4 -18 274 79 6 1254 945 270 9 79 chr6 87806378 87806821 -61710216 - BGLII_B LTR ERVK -29 412 1 6 1254 400 289 31 0 chr6 87807682 87807779 -61709258 + PB1D10 SINE Alu 11 110 -7 6 1254 22 35 0 0 chr6 87807815 87807844 -61709193 + AT_rich Low_complexity Low_complexity 1 29 0 6 1254 361 328 59 7 chr6 87807864 87807999 -61709038 - RSINE1 SINE B4 -13 152 11 6 1254 893 195 136 5 chr6 87808033 87808224 -61708813 - B3 SINE B2 0 216 1 6 1254 27 0 0 0 chr6 87808230 87808257 -61708780 + AT_rich Low_complexity Low_complexity 1 27 0 6 1254 327 285 149 50 chr6 87808347 87808668 -61708369 - L1MA4 LINE L1 -3 6297 5945 6 1254 923 103 7 46 chr6 87808672 87808825 -61708212 - B1_Mus1 SINE Alu 0 148 2 6 1254 1049 101 0 0 chr6 87809051 87809189 -61707848 + B1_Mus1 SINE Alu 2 139 -9 6 1254 273 57 0 0 chr6 87809189 87809224 -61707813 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1254 1670 27 0 0 chr6 87809440 87809628 -61707409 - B2_Mm1a SINE B2 -4 189 2 6 1254 441 262 18 27 chr6 87809766 87809876 -61707161 - RMER4B LTR ERVK -134 451 343 6 1254 227 31 31 0 chr6 87810029 87810061 -61706976 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6 1254 1058 72 43 0 chr6 87810079 87810218 -61706819 - B1_Mm SINE Alu -1 146 2 6 1254 724 121 57 0 chr6 87810287 87810409 -61706628 + RLTR14 LTR ERV1 7 135 -247 6 1254 1113 113 18 0 chr6 87810409 87810577 -61706460 + B2_Mm1t SINE B2 1 171 -22 6 1254 297 179 10 0 chr6 87810632 87810698 -61706339 + B2_Mm2 SINE B2 47 116 -100 6 1254 769 135 173 9 chr6 87810737 87810963 -61706074 + RLTR14 LTR ERV1 120 382 0 6 1254 293 314 9 28 chr6 87811012 87811120 -61705917 - ID_B1 SINE B4 0 224 119 6 1254 214 200 0 22 chr6 87811148 87811194 -61705843 + T-rich Low_complexity Low_complexity 3 47 0 6 1254 297 235 35 12 chr6 87811383 87811469 -61705568 + ID_B1 SINE B4 125 212 -12 6 1254 449 314 64 25 chr6 87811511 87811668 -61705369 + RSINE1 SINE B4 2 164 -1 6 1254 233 75 25 0 chr6 87811677 87811717 -61705320 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1254 490 306 29 0 chr6 87811717 87811890 -61705147 + B3A SINE B2 3 180 -18 6 1254 597 182 64 57 chr6 87811921 87812061 -61704976 + B1_Mur2 SINE Alu 1 141 -8 6 1254 515 16 16 0 chr6 87812251 87812315 -61704722 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 6 1254 1099 59 0 7 chr6 87812315 87812451 -61704586 - B1_Mm SINE Alu -11 136 2 6 1254 204 40 0 0 chr6 87812451 87812476 -61704561 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 1254 1874 131 110 21 chr6 87812580 87812963 -61704074 + RMER4A LTR ERVK 50 466 0 6 1254 290 26 26 0 chr6 87813025 87813064 -61703973 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1254 302 326 74 0 chr6 87813187 87813282 -61703755 + PB1D10 SINE Alu 8 109 -8 6 1254 352 281 15 97 chr6 87813740 87813772 -61703265 + ID SINE ID 64 84 -140 6 1254 406 223 86 35 chr6 87813772 87813888 -61703149 + B1F1 SINE Alu 2 123 -26 6 1254 646 257 40 0 chr6 87813889 87814064 -61702973 - L1MC LINE L1 -605 5739 5558 6 1254 235 256 45 114 chr6 87814066 87814154 -61702883 + ID_B1 SINE B4 94 175 -49 6 1254 288 0 0 0 chr6 87814172 87814204 -61702833 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1254 297 0 0 0 chr6 87814204 87814236 -61702801 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1254 373 230 23 0 chr6 87814280 87814367 -61702670 - L1MC LINE L1 -784 5549 5461 6 1254 383 316 13 0 chr6 87814493 87814648 -61702389 - L1MC LINE L1 -868 5476 5320 6 1254 263 28 28 0 chr6 87814698 87814734 -61702303 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 6 1254 607 205 0 8 chr6 87814741 87814859 -61702178 - B1_Mur4 SINE Alu -33 117 1 6 1254 532 144 22 0 chr6 87815166 87815256 -61701781 + B1_Mur2 SINE Alu 7 98 -51 6 1254 357 255 28 9 chr6 87815256 87815273 -61701764 + ID_B1 SINE B4 118 196 -28 6 1254 383 263 0 10 chr6 87815571 87815671 -61701366 - PB1D10 SINE Alu -1 116 18 6 1254 380 212 35 0 chr6 87816023 87816108 -61700929 + RSINE1 SINE B4 35 122 -43 6 1254 517 193 73 0 chr6 87816185 87816294 -61700743 + B1_Mus1 SINE Alu 2 118 -30 6 1254 316 187 286 0 chr6 87816389 87816480 -61700557 + ID_B1 SINE B4 4 120 -104 6 1254 289 240 27 0 chr6 87816462 87816537 -61700500 - PB1D7 SINE Alu -43 77 1 6 1254 372 240 134 19 chr6 87816597 87816754 -61700283 - L1MB3 LINE L1 -54 6129 5955 6 1254 198 0 0 0 chr6 87816829 87816851 -61700186 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 1254 371 281 10 10 chr6 87816851 87816944 -61700093 - B1F2 SINE Alu -13 136 44 6 1254 424 122 0 36 chr6 87816951 87817062 -61699975 + (TCTCTG)n Simple_repeat Simple_repeat 2 108 0 6 1254 621 238 51 15 chr6 87817655 87817851 -61699186 + B3 SINE B2 2 204 -12 6 1254 255 323 0 30 chr6 87818135 87818234 -61698803 + PB1D10 SINE Alu 22 117 0 6 1255 236 261 29 14 chr6 87818261 87818331 -61698706 + ID_B1 SINE B4 140 210 -14 6 1255 266 299 148 56 chr6 87818346 87818488 -61698549 + ID_B1 SINE B4 28 182 -42 6 1255 240 203 17 17 chr6 87818521 87818581 -61698456 + B1F SINE Alu 90 149 0 6 1255 229 254 45 0 chr6 87818601 87818668 -61698369 + L1MB4 LINE L1 5932 6001 -179 6 1255 259 284 0 15 chr6 87819440 87819508 -61697529 - ID4_ SINE ID -9 74 8 6 1255 207 0 0 0 chr6 87819556 87819579 -61697458 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1255 1653 42 0 0 chr6 87819947 87820140 -61696897 - B2_Mm1a SINE B2 0 193 1 6 1255 513 250 194 11 chr6 87820144 87820261 -61696776 - ID_B1 SINE B4 -3 221 72 6 1255 552 30 0 0 chr6 87820261 87820327 -61696710 + (CTG)n Simple_repeat Simple_repeat 2 67 0 6 1255 513 250 194 11 chr6 87820327 87820395 -61696642 - ID SINE ID -153 71 3 6 1255 224 242 32 16 chr6 87820404 87820467 -61696570 - B1F SINE Alu -7 142 79 6 1255 288 0 0 0 chr6 87820814 87820846 -61696191 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6 1255 1349 85 11 0 chr6 87820879 87821056 -61695981 - B2_Mm1t SINE B2 -14 179 1 6 1255 203 173 19 0 chr6 87821246 87821298 -61695739 + CT-rich Low_complexity Low_complexity 1 53 0 6 1255 864 161 0 69 chr6 87821306 87821466 -61695571 - B1_Mur3 SINE Alu 0 149 1 6 1255 222 220 40 0 chr6 87821484 87821534 -61695503 - PB1D7 SINE Alu -59 61 10 6 1255 1418 89 11 0 chr6 87821643 87821833 -61695204 + B2_Mm1t SINE B2 2 193 0 6 1255 243 0 0 0 chr6 87821929 87821956 -61695081 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1255 699 212 0 21 chr6 87821961 87822101 -61694936 - B1_Mur3 SINE Alu -12 137 1 6 1255 621 243 28 0 chr6 87822233 87822377 -61694660 - B1_Mur1 SINE Alu 0 149 2 6 1255 221 155 0 79 chr6 87822397 87822460 -61694577 + T-rich Low_complexity Low_complexity 1 58 0 6 1255 26 30 0 0 chr6 87822460 87822493 -61694544 + AT_rich Low_complexity Low_complexity 1 33 0 6 1255 617 286 76 80 chr6 87822538 87822800 -61694237 + B4 SINE B4 32 292 0 6 1255 345 206 16 171 chr6 87823570 87823612 -61693425 - B1F2 SINE Alu -8 141 99 6 1255 348 24 0 0 chr6 87823612 87823653 -61693384 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1255 345 206 16 171 chr6 87823653 87823668 -61693369 - B1F2 SINE Alu -51 98 98 6 1255 242 56 0 27 chr6 87823668 87823705 -61693332 + (CATA)n Simple_repeat Simple_repeat 3 38 0 6 1255 345 206 16 171 chr6 87823705 87823775 -61693262 - B1F2 SINE Alu -51 98 33 6 1255 834 133 8 0 chr6 87823794 87823922 -61693115 - B1_Mus2 SINE Alu -10 137 9 6 1255 838 227 63 10 chr6 87824083 87824288 -61692749 - B3 SINE B2 0 216 1 6 1255 625 205 17 0 chr6 87824314 87824431 -61692606 - B1_Mur4 SINE Alu -11 139 21 6 1255 686 211 131 0 chr6 87824443 87824618 -61692419 - B4A SINE B4 -94 198 1 6 1255 233 209 15 0 chr6 87824646 87824713 -61692324 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 1255 445 274 8 8 chr6 87824760 87824878 -61692159 - PB1D7 SINE Alu -1 119 2 6 1255 263 314 31 24 chr6 87825107 87825234 -61691803 + MamRep4096 DNA hAT? 218 345 -81 6 1255 192 311 77 10 chr6 87825392 87825496 -61691541 + MIR SINE MIR 134 244 -18 7 1255 884 112 0 0 chr6 87825925 87826059 -61690978 + B1_Mus1 SINE Alu 14 147 -1 7 1255 283 218 0 0 chr6 87826587 87826642 -61690395 - B3 SINE B2 -115 101 47 7 1255 244 188 14 14 chr6 87826657 87826727 -61690310 + T-rich Low_complexity Low_complexity 1 70 0 7 1255 449 208 48 19 chr6 87826915 87827018 -61690019 - PB1D9 SINE Alu -13 107 2 7 1255 270 0 0 0 chr6 87827162 87827192 -61689845 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1255 1036 81 0 0 chr6 87827293 87827441 -61689596 + B2_Mm2 SINE B2 1 148 -47 7 1255 186 71 0 0 chr6 87827609 87827637 -61689400 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 7 1255 271 150 33 0 chr6 87828166 87828226 -61688811 + CT-rich Low_complexity Low_complexity 2 63 0 7 1255 760 189 0 0 chr6 87828227 87828354 -61688683 - B1_Mur1 SINE Alu -8 141 15 7 1255 652 282 17 11 chr6 87828429 87828608 -61688429 - B3A SINE B2 -15 183 4 7 1255 814 283 64 0 chr6 87828611 87828830 -61688207 - RMER15-int LTR ERVL -3696 1303 1071 7 1255 351 248 0 0 chr6 87828869 87828974 -61688063 + GA-rich Low_complexity Low_complexity 4 108 0 7 1255 564 236 0 0 chr6 87829132 87829242 -61687795 - RSINE1 SINE B4 -15 150 41 7 1255 232 305 24 0 chr6 87829332 87829414 -61687623 + (CATATA)n Simple_repeat Simple_repeat 5 88 0 7 1255 325 357 29 17 chr6 87829654 87829828 -61687209 - B4A SINE B4 -67 225 50 7 1255 360 226 19 106 chr6 87829750 87829854 -61687183 - B3 SINE B2 -98 118 24 7 1255 180 0 0 0 chr6 87830051 87830071 -61686966 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1255 1648 149 26 132 chr6 87830918 87830973 -61686064 - ORR1B1 LTR MaLR -8 386 353 7 1255 1373 68 6 11 chr6 87830973 87831151 -61685886 - B2_Mm2 SINE B2 -18 177 1 7 1255 1648 149 26 132 chr6 87831151 87831482 -61685555 - ORR1B1 LTR MaLR -42 352 41 7 1255 206 222 0 60 chr6 87831597 87831648 -61685389 + T-rich Low_complexity Low_complexity 14 63 0 7 1255 931 117 6 70 chr6 87831648 87831805 -61685232 - B1_Mus1 SINE Alu 0 148 2 7 1255 206 222 0 60 chr6 87831805 87831820 -61685217 + T-rich Low_complexity Low_complexity 1 13 0 7 1255 1226 108 0 22 chr6 87831833 87832012 -61685025 - B2_Mm2 SINE B2 -19 176 2 7 1255 426 85 0 0 chr6 87832242 87832301 -61684736 + (TGG)n Simple_repeat Simple_repeat 1 59 0 7 1255 858 217 58 0 chr6 87832318 87832507 -61684530 - B3 SINE B2 -14 202 3 7 1255 232 167 0 0 chr6 87832507 87832555 -61684482 + (CCA)n Simple_repeat Simple_repeat 2 49 0 7 1255 459 0 0 0 chr6 87833134 87833185 -61683852 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1255 269 235 17 25 chr6 87833346 87833464 -61683573 + CT-rich Low_complexity Low_complexity 6 122 0 7 1255 327 178 107 27 chr6 87833512 87833587 -61683450 - ID4 SINE ID -1 82 2 7 1255 214 235 39 0 chr6 87833662 87833713 -61683324 - L2c LINE L2 -7 3380 3328 7 1255 422 290 42 24 chr6 87833760 87833926 -61683111 + MLT2B4 LTR ERVL 15 183 -373 7 1255 180 0 0 0 chr6 87833999 87834019 -61683018 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1255 369 0 0 0 chr6 87834019 87834060 -61682977 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1255 791 285 22 16 chr6 87834060 87834242 -61682795 - ID_B1 SINE B4 -13 211 29 7 1255 676 198 115 33 chr6 87834521 87834704 -61682333 - B3A SINE B2 0 198 1 7 1255 1140 77 0 6 chr6 87834767 87834923 -61682114 + B2_Mm2 SINE B2 34 188 -7 7 1255 376 236 97 0 chr6 87834963 87835107 -61681930 + L1M4 LINE L1 4980 5137 -1009 7 1255 1199 111 26 48 chr6 87835140 87835329 -61681708 + B2_Mm2 SINE B2 2 186 -9 7 1255 1082 114 0 13 chr6 87835360 87835511 -61681526 - B1_Mur3 SINE Alu 0 149 1 7 1255 396 83 0 32 chr6 87835689 87835751 -61681286 + B1_Mus1 SINE Alu 1 60 -88 7 1255 224 0 0 157 chr6 87835752 87835860 -61681177 + (CAGAG)n Simple_repeat Simple_repeat 5 95 0 7 1255 663 76 90 4 chr6 87835863 87835963 -61681074 + B1_Mus2 SINE Alu 42 142 -5 7 1255 272 238 15 60 chr6 87837142 87837209 -61679828 - RSINE1 SINE B4 -99 66 3 7 1255 315 234 270 0 chr6 87837211 87837322 -61679715 - ID_B1 SINE B4 -6 218 78 7 1255 958 141 54 18 chr6 87837412 87837578 -61679459 + RMER10B LTR ERVL 227 398 0 7 1255 312 152 81 71 chr6 87838243 87838342 -61678695 + MIR3 SINE MIR 62 161 -47 7 1255 432 247 197 5 chr6 87838822 87839005 -61678032 + ID_B1 SINE B4 7 224 0 7 1255 1369 51 5 43 chr6 87839324 87839508 -61677529 + B2_Mm2 SINE B2 1 177 -18 7 1255 479 214 71 0 chr6 87840621 87840733 -61676304 + PB1D7 SINE Alu 1 120 0 7 1255 388 233 214 0 chr6 87840847 87840950 -61676087 + B3A SINE B2 1 125 -73 7 1255 358 183 0 0 chr6 87840944 87841004 -61676033 - RMER15 LTR ERVL -514 61 2 7 1255 2393 144 113 2 chr6 87841103 87841556 -61675481 - RLTR28 LTR ERVL -21 503 1 7 1255 326 216 58 4 chr6 87841670 87841760 -61675277 - B1F2 SINE Alu -10 117 17 7 1255 304 302 8 57 chr6 87846561 87846684 -61670353 - PB1D10 SINE Alu 0 117 1 7 1255 364 319 100 33 chr6 87846710 87846830 -61670207 - B1F1 SINE Alu -19 128 1 7 1255 868 140 14 14 chr6 87846844 87846989 -61670048 - B1_Mur4 SINE Alu -1 149 5 7 1255 300 282 73 57 chr6 87847221 87847345 -61669692 - L1MD1 LINE L1 -216 6026 5901 7 1255 663 177 17 26 chr6 87848411 87848527 -61668510 - B1_Mur2 SINE Alu -1 148 34 7 1255 229 222 0 0 chr6 87848550 87848595 -61668442 + ID_B1 SINE B4 83 127 -97 7 1255 327 270 27 0 chr6 87848603 87848677 -61668360 + RSINE1 SINE B4 43 118 -47 7 1255 539 315 123 6 chr6 87848790 87848953 -61668084 + B3A SINE B2 1 182 -16 7 1255 182 91 30 0 chr6 87848957 87848990 -61668047 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1255 778 233 31 83 chr6 87849023 87849252 -61667785 + ID_B1 SINE B4 1 217 -7 7 1255 436 231 29 0 chr6 87849656 87849760 -61667277 - PB1D10 SINE Alu -10 107 1 7 1255 1495 59 0 5 chr6 87850203 87850389 -61666648 - B2_Mm2 SINE B2 -10 185 1 7 1255 250 284 91 154 chr6 87850400 87850434 -61666603 - B2_Mm2 SINE B2 0 195 160 7 1255 366 61 0 0 chr6 87850434 87850483 -61666554 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1255 478 260 6 133 chr6 87850483 87850616 -61666421 - B3A SINE B2 -47 151 36 7 1255 1186 82 0 0 chr6 87850616 87850763 -61666274 - B1_Mus1 SINE Alu -1 147 1 7 1255 478 260 6 133 chr6 87850763 87850802 -61666235 - B3A SINE B2 -163 35 1 7 1255 697 242 50 35 chr6 87850818 87851027 -61666010 - B3 SINE B2 0 216 23 7 1255 380 301 118 0 chr6 87851063 87851249 -61665788 - L1MB2 LINE L1 -196 5975 5768 7 1255 300 222 56 0 chr6 87851301 87851373 -61665664 - L1MB2 LINE L1 -538 5645 5570 7 1255 32 0 0 0 chr6 87852597 87852629 -61664408 + AT_rich Low_complexity Low_complexity 1 32 0 7 1255 392 274 44 0 chr6 87852659 87852772 -61664265 - PB1D7 SINE Alu 0 120 3 7 1255 1455 32 31 31 chr6 87852840 87853031 -61664006 - B2_Mm2 SINE B2 -3 192 2 7 1255 752 206 0 0 chr6 87853624 87853750 -61663287 - B1_Mur3 SINE Alu -22 127 2 7 1255 258 239 15 15 chr6 87853690 87853758 -61663279 + YREP_Mm Unknown Unknown 256 323 -1489 7 1255 368 233 0 11 chr6 87853760 87853847 -61663190 - B3 SINE B2 -1 215 130 7 1255 246 288 25 0 chr6 87854376 87854456 -61662581 - ID4_ SINE ID 0 83 2 7 1255 372 291 0 0 chr6 87854461 87854547 -61662490 - PB1D7 SINE Alu -1 119 34 7 1255 1294 90 10 21 chr6 87855522 87855715 -61661322 - B2_Mm1t SINE B2 0 193 3 7 1255 1692 31 0 0 chr6 87855738 87855930 -61661107 - B2_Mm1a SINE B2 0 193 2 7 1255 321 316 59 17 chr6 87856435 87856576 -61660461 - B1F1 SINE Alu -2 147 4 7 1255 344 281 40 30 chr6 87856609 87856708 -61660329 + B1F1 SINE Alu 5 104 -45 7 1255 654 115 25 66 chr6 87856733 87856854 -61660183 - B2_Mm2 SINE B2 -37 158 43 7 1255 465 230 0 0 chr6 87856933 87857020 -61660017 + B3A SINE B2 1 87 -111 7 1255 263 287 121 23 chr6 87857020 87857065 -61659972 + B4A SINE B4 1 145 -147 7 1255 213 139 0 0 chr6 87857699 87857742 -61659295 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1255 358 282 54 18 chr6 87858069 87858181 -61658856 - MIRb SINE MIR -50 218 103 7 1255 528 272 141 107 chr6 87858644 87858821 -61658216 + B3 SINE B2 1 183 -12 7 1255 525 134 214 43 chr6 87858847 87858964 -61658073 - B1_Mm SINE Alu -9 138 2 7 1255 326 266 55 0 chr6 87860525 87860634 -61656403 + PB1D9 SINE Alu 2 116 -4 7 1255 259 183 252 84 chr6 87860653 87860724 -61656313 + B3 SINE B2 64 155 -61 7 1255 2878 96 9 16 chr6 87860724 87861149 -61655888 - BGLII_Mus LTR ERVK 0 422 1 7 1255 259 183 252 84 chr6 87861149 87861208 -61655829 + B3 SINE B2 156 215 -1 7 1255 220 266 209 75 chr6 87861500 87861634 -61655403 - ID_B1 SINE B4 -70 154 3 7 1255 240 35 0 0 chr6 87862065 87862094 -61654943 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 7 1255 233 289 20 10 chr6 87864050 87864148 -61652889 + (CGGG)n Simple_repeat Simple_repeat 2 100 0 7 1255 516 219 54 47 chr6 87864934 87865063 -61651974 - B1_Mur2 SINE Alu -5 144 15 7 1255 361 250 53 120 chr6 87865063 87865079 -61651958 - ID_B1 SINE B4 -5 219 84 7 1255 198 0 0 0 chr6 87865079 87865101 -61651936 + (TC)n Simple_repeat Simple_repeat 2 23 0 7 1255 592 200 18 9 chr6 87865185 87865296 -61651741 + PB1D9 SINE Alu 3 114 -6 8 1255 285 273 12 72 chr6 87865360 87865443 -61651594 + RSINE1 SINE B4 88 165 0 8 1255 897 207 63 34 chr6 87865557 87865768 -61651269 - B3 SINE B2 -6 210 16 8 1255 463 213 10 41 chr6 87866300 87866398 -61650639 - B3 SINE B2 0 216 122 8 1255 571 267 23 46 chr6 87866436 87866609 -61650428 - Lx8 LINE L1 -272 7201 7033 8 1255 646 225 34 27 chr6 87866637 87866783 -61650254 - B1_Mus2 SINE Alu 0 147 1 8 1255 928 269 74 21 chr6 87866930 87867215 -61649822 - Lx8 LINE L1 -461 7012 6713 8 1255 239 342 26 0 chr6 87867215 87867291 -61649746 - B1_Mus1 SINE Alu -59 89 12 8 1255 412 211 71 70 chr6 87867338 87867436 -61649601 - B1_Mur3 SINE Alu -51 99 1 8 1255 387 273 11 0 chr6 87867593 87867681 -61649356 - B3A SINE B2 -91 107 19 8 1255 443 301 8 34 chr6 87867676 87867793 -61649244 - B1F1 SINE Alu -24 125 12 8 1255 1091 123 0 0 chr6 87868080 87868226 -61648811 - B1_Mus1 SINE Alu 0 148 3 8 1255 1927 144 75 31 chr6 87868307 87868665 -61648372 + ORR1D1 LTR MaLR 1 374 0 8 1255 666 237 15 8 chr6 87868693 87868825 -61648212 + B1_Mur4 SINE Alu 10 142 -8 8 1255 366 287 10 31 chr6 87868854 87868951 -61648086 + RSINE1 SINE B4 23 117 -48 8 1255 945 252 146 23 chr6 87869103 87869385 -61647652 + MTD LTR MaLR 1 314 -107 8 1255 555 277 75 52 chr6 87869380 87869731 -61647306 - RLTR15 LTR ERVK -30 498 38 8 1255 607 178 27 45 chr6 87869756 87869868 -61647169 - B1_Mur4 SINE Alu -17 133 24 8 1255 307 296 73 81 chr6 87869868 87869892 -61647145 - ID_B1 SINE B4 -17 207 73 8 1255 427 288 105 8 chr6 87869886 87870019 -61647018 + MTD LTR MaLR 274 419 0 8 1255 249 367 15 30 chr6 87870185 87870316 -61646721 - MLT1F LTR MaLR -412 136 8 8 1255 466 248 161 0 chr6 87870316 87870465 -61646572 - RMER15 LTR ERVL 0 575 403 8 1255 701 229 15 0 chr6 87870765 87870896 -61646141 + RSINE1 SINE B4 12 144 -21 8 1255 23 0 0 0 chr6 87870900 87870923 -61646114 + AT_rich Low_complexity Low_complexity 1 23 0 8 1255 759 144 16 0 chr6 87870938 87871063 -61645974 + B1_Mus1 SINE Alu 15 141 -7 8 1255 811 170 56 21 chr6 87871080 87871224 -61645813 + B1_Mur2 SINE Alu 1 149 0 8 1255 291 28 0 0 chr6 87871365 87871401 -61645636 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1255 289 329 0 0 chr6 87871407 87871483 -61645554 - ID2 SINE ID -6 77 2 8 1255 5313 171 63 29 chr6 87871865 87872957 -61644080 - Lx9 LINE L1 -2 7642 6514 8 1255 538 267 9 0 chr6 87872957 87873072 -61643965 - B1_Mur1 SINE Alu -20 129 14 8 1255 273 258 15 0 chr6 87873079 87873125 -61643912 + ID_B1 SINE B4 89 135 -89 8 1255 543 202 34 128 chr6 87873125 87873273 -61643764 - B1_Mur2 SINE Alu -14 135 2 8 1255 273 258 15 0 chr6 87873273 87873292 -61643745 + ID_B1 SINE B4 136 154 -70 8 1255 944 145 7 0 chr6 87873869 87874014 -61643023 - B1_Mus1 SINE Alu -1 147 2 8 1255 383 277 79 0 chr6 87874077 87874178 -61642859 - B4A SINE B4 -4 288 180 8 1255 297 213 0 32 chr6 87874174 87874237 -61642800 - B4A SINE B4 -228 64 4 8 1255 686 176 50 29 chr6 87874303 87874443 -61642594 - B1_Mur2 SINE Alu -6 143 1 8 1255 1191 61 0 7 chr6 87874595 87874744 -61642293 - B1_Mus1 SINE Alu 0 148 1 8 1255 1278 74 68 6 chr6 87874774 87874950 -61642087 - B2_Mm2 SINE B2 -6 189 3 8 1255 261 260 27 14 chr6 87875182 87875256 -61641781 - L1MCc LINE L1 -5184 1239 1165 8 1255 578 258 98 35 chr6 87876090 87876263 -61640774 + B3A SINE B2 14 197 -1 8 1255 631 211 392 4 chr6 87876413 87876689 -61640348 - MTD LTR MaLR -36 383 1 8 1255 341 265 9 64 chr6 87876721 87876830 -61640207 + PB1D10 SINE Alu 2 104 -13 8 1255 367 335 92 8 chr6 87876873 87877111 -61639926 - Tigger9a DNA Tigger -323 409 152 8 1255 835 180 190 33 chr6 87877387 87877571 -61639466 - B3 SINE B2 -3 213 1 8 1255 325 188 14 0 chr6 87877803 87877872 -61639165 - MMAR1 DNA Mariner -58 1228 1159 8 1255 1150 66 0 0 chr6 87877877 87878014 -61639023 + B1_Mus1 SINE Alu 3 139 -9 8 1255 207 0 0 0 chr6 87878014 87878037 -61639000 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 8 1255 180 0 0 0 chr6 87878044 87878064 -61638973 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 8 1255 740 111 8 0 chr6 87878062 87878179 -61638858 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 8 1255 1355 282 63 9 chr6 87878180 87878294 -61638743 - MMAR1 DNA Mariner -606 680 564 8 1255 889 136 112 0 chr6 87878294 87878463 -61638574 - B2_Mm2 SINE B2 -6 189 2 8 1255 1355 282 63 9 chr6 87878463 87878698 -61638339 - MMAR1 DNA Mariner -723 563 312 8 1255 23 0 0 0 chr6 87878758 87878781 -61638256 + AT_rich Low_complexity Low_complexity 1 23 0 8 1255 1071 199 15 0 chr6 87879439 87879640 -61637397 - B3 SINE B2 -8 208 5 8 1255 1190 75 0 0 chr6 87879701 87879848 -61637189 - B1_Mus2 SINE Alu 0 147 1 8 1255 701 256 116 6 chr6 87880443 87880624 -61636413 - B3 SINE B2 -15 201 1 8 1255 456 283 10 0 chr6 87880669 87880768 -61636269 - B1_Mur2 SINE Alu -10 139 40 8 1255 260 361 9 0 chr6 87880897 87881005 -61636032 + PB1D10 SINE Alu 1 109 -8 8 1255 819 169 14 0 chr6 87881014 87881156 -61635881 + B1_Mur3 SINE Alu 1 144 -5 8 1255 297 341 0 0 chr6 87881185 87881267 -61635770 + ID4_ SINE ID 2 83 0 8 1255 2102 138 35 158 chr6 87881267 87881837 -61635200 - RLTR1B LTR ERV1 -16 589 1 8 1255 234 291 18 0 chr6 87881861 87881916 -61635121 + 4.5SRNA scRNA scRNA 1 56 -38 8 1255 896 183 76 30 chr6 87881949 87882146 -61634891 + B3 SINE B2 2 207 -9 8 1255 290 269 21 69 chr6 87882350 87882494 -61634543 - MER104 DNA Tc2 -3 178 42 8 1255 663 232 7 7 chr6 87882519 87882658 -61634379 - B1F SINE Alu 0 149 11 8 1255 436 209 17 83 chr6 87882706 87882826 -61634211 + PB1D10 SINE Alu 6 117 0 8 1255 445 254 36 0 chr6 87882825 87882935 -61634102 - PB1 SINE Alu -12 115 2 8 1255 729 207 0 7 chr6 87883522 87883663 -61633374 - B1_Mur2 SINE Alu -9 140 1 8 1255 703 224 36 62 chr6 87883699 87883894 -61633143 - B3A SINE B2 -8 190 1 8 1255 640 123 133 37 chr6 87883905 87884040 -61632997 - B1_Mur1 SINE Alu 0 149 2 8 1255 1116 62 14 0 chr6 87884224 87884368 -61632669 + B1_Mm SINE Alu 2 147 0 8 1255 240 211 96 0 chr6 87884615 87884667 -61632370 - RSINE1 SINE B4 -1 164 108 8 1255 810 250 72 3 chr6 87884638 87884872 -61632165 - B4 SINE B4 -10 282 16 8 1255 253 186 97 28 chr6 87884972 87885044 -61631993 - LTR39 LTR ERV1 -634 149 73 8 1255 899 155 0 20 chr6 87885538 87885689 -61631348 - B1_Mus1 SINE Alu 0 148 1 8 1255 1238 28 14 0 chr6 87887082 87887227 -61629810 + B1_Mus2 SINE Alu 1 147 0 8 1255 291 229 95 12 chr6 87888081 87888165 -61628872 + PB1D10 SINE Alu 10 100 -17 8 1255 369 0 0 0 chr6 87888383 87888424 -61628613 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1255 435 279 59 44 chr6 87888429 87888564 -61628473 - RSINE1 SINE B4 -18 147 11 8 1255 276 30 0 0 chr6 87889926 87889959 -61627078 + (TC)n Simple_repeat Simple_repeat 2 34 0 8 1255 235 172 17 17 chr6 87889985 87890011 -61627026 + T-rich Low_complexity Low_complexity 36 60 0 8 1255 1246 55 0 0 chr6 87890011 87890157 -61626880 - B1_Mus2 SINE Alu -1 146 1 8 1255 235 172 17 17 chr6 87890157 87890189 -61626848 + T-rich Low_complexity Low_complexity 3 35 0 8 1255 667 192 23 23 chr6 87890196 87890329 -61626708 - B1_Mur2 SINE Alu -7 142 10 8 1255 332 331 57 57 chr6 87891082 87891223 -61625814 - RSINE1 SINE B4 -24 141 1 8 1255 530 165 209 0 chr6 87891294 87891409 -61625628 + B1_Mus2 SINE Alu 3 141 -6 8 1255 1062 78 0 38 chr6 87891420 87891606 -61625431 + (GAA)n Simple_repeat Simple_repeat 2 180 0 8 1255 647 121 15 61 chr6 87891620 87891851 -61625186 + GA-rich Low_complexity Low_complexity 1 220 0 8 1255 980 124 6 17 chr6 87891851 87892032 -61625005 + (GAA)n Simple_repeat Simple_repeat 1 179 0 8 1255 429 220 200 17 chr6 87892097 87892217 -61624820 - B3 SINE B2 0 216 75 8 1255 253 239 14 29 chr6 87892178 87892247 -61624790 + RMER6A LTR ERVK 471 538 -152 8 1255 560 56 348 0 chr6 87892249 87892338 -61624699 + PB1D9 SINE Alu 1 120 0 8 1255 216 0 0 0 chr6 87892338 87892362 -61624675 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1255 1570 90 19 72 chr6 87892364 87892627 -61624410 + RMER6A LTR ERVK 500 748 -8 8 1255 1384 195 36 95 chr6 87892627 87893017 -61624020 + RodERV21-int LTR ERV1 469 835 -4156 8 1255 1392 242 39 57 chr6 87893182 87893620 -61623417 + RodERV21-int LTR ERV1 1097 1526 -3465 8 1255 1696 168 62 7 chr6 87893662 87893968 -61623069 + RodERV21-int LTR ERV1 1815 2137 -2854 8 1255 2298 186 10 69 chr6 87895210 87895719 -61621318 + RodERV21-int LTR ERV1 2130 2608 -2383 8 1255 1616 152 15 0 chr6 87895716 87895986 -61621051 + RodERV21-int LTR ERV1 4467 4740 -251 8 1255 2238 147 216 43 chr6 87896033 87896661 -61620376 + RMER6C LTR ERVK 1 663 -27 8 1255 2613 178 99 51 chr6 87896661 87897540 -61619497 - RLTR13D1 LTR ERVK 0 855 14 8 1255 180 0 0 0 chr6 87897583 87897603 -61619434 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1255 252 0 0 0 chr6 87897603 87897631 -61619406 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1255 1110 87 0 0 chr6 87897631 87897769 -61619268 - B1_Mus1 SINE Alu -9 139 2 8 1255 562 267 101 14 chr6 87897788 87897936 -61619101 + MTC LTR MaLR 185 345 -76 8 1255 952 212 26 16 chr6 87897920 87898112 -61618925 - ORR1D1 LTR MaLR -180 194 1 8 1255 789 171 20 20 chr6 87898240 87898389 -61618648 - B1_Mur3 SINE Alu 0 149 1 8 1255 28 0 0 0 chr6 87898401 87898429 -61618608 + AT_rich Low_complexity Low_complexity 1 28 0 8 1255 4311 45 4 10 chr6 87898873 87899388 -61617649 + LTRIS3 LTR ERV1 1 512 0 8 1255 643 136 48 0 chr6 87899803 87899906 -61617131 + RMER19B LTR ERVK 1 108 -794 8 1255 2933 65 34 32 chr6 87899906 87900316 -61616721 + RLTR10A LTR ERVK 1 411 0 9 1255 1880 69 2 15 chr6 87900316 87900579 -61616458 + RLTR10-int LTR ERVK 302 549 -1438 9 1255 1713 21 0 0 chr6 87900579 87900769 -61616268 + B2_Mm1a SINE B2 1 190 -3 9 1255 1023 72 32 41 chr6 87900769 87900907 -61616130 + RLTR10-int LTR ERVK 487 602 -1385 9 1255 738 224 0 0 chr6 87900901 87901057 -61615980 + RLTR10-int LTR ERVK 347 502 -6040 9 1255 3487 50 88 14 chr6 87901057 87901543 -61615494 + RLTR10-int LTR ERVK 5006 5527 -1015 9 1255 4527 103 73 39 chr6 87901547 87902433 -61614604 + RLTR10-int LTR ERVK 1288 1986 -1 9 1255 3127 37 25 17 chr6 87902433 87902505 -61614532 + RLTR10A LTR ERVK 1 72 -339 9 1255 3208 43 29 0 chr6 87902505 87902879 -61614158 - IAPEY_LTR LTR ERVK 0 385 1 9 1255 3127 91 43 34 chr6 87902879 87903468 -61613569 + RLTR10A LTR ERVK 73 548 -354 9 1255 619 199 58 14 chr6 87903516 87903654 -61613383 - RLTR23 LTR ERV1 0 430 287 9 1255 327 266 0 0 chr6 87904001 87904078 -61612959 - RLTR18 LTR ERVK -245 371 295 9 1255 4103 146 31 18 chr6 87904078 87904743 -61612294 - RMER19B LTR ERVK -1 901 228 9 1255 2609 177 52 55 chr6 87904743 87905139 -61611898 + RLTR20A LTR ERVK 1 406 -135 9 1255 1191 75 0 0 chr6 87905139 87905286 -61611751 + B1_Mus2 SINE Alu 1 147 0 9 1255 2609 177 52 55 chr6 87905286 87905342 -61611695 + RLTR20A LTR ERVK 407 451 -90 9 1255 225 0 0 0 chr6 87905342 87905367 -61611670 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1255 2609 177 52 55 chr6 87905367 87905456 -61611581 + RLTR20A LTR ERVK 452 541 0 9 1255 1184 178 80 18 chr6 87905456 87905755 -61611282 - RMER19B LTR ERVK -401 336 1 9 1255 1713 151 13 27 chr6 87905755 87906053 -61610984 - RLTR18 LTR ERVK -319 297 4 9 1255 487 160 59 10 chr6 87906053 87906148 -61610889 + B1_Mur1 SINE Alu 34 133 -16 9 1255 2086 146 87 11 chr6 87906148 87906516 -61610521 + MTC LTR MaLR 1 396 -25 9 1255 603 40 0 0 chr6 87906518 87906592 -61610445 + (TC)n Simple_repeat Simple_repeat 2 75 0 9 1255 448 231 33 11 chr6 87906593 87906685 -61610352 - B3 SINE B2 -118 98 5 9 1255 5939 133 40 3 chr6 87907291 87908574 -61608463 - Lx LINE L1 -73 6581 5259 9 1255 632 232 7 7 chr6 87908605 87908748 -61608289 + ORR1C2 LTR MaLR 1 143 -231 9 1255 838 182 13 13 chr6 87908787 87908937 -61608100 - B1_Mur4 SINE Alu 0 150 1 9 1255 320 158 36 0 chr6 87908937 87908999 -61608038 + ORR1C2 LTR MaLR 129 198 -176 9 1255 1428 153 7 68 chr6 87908999 87909260 -61607777 + RLTR9F LTR ERVK 1 244 -165 9 1255 2283 88 153 6 chr6 87909260 87909613 -61607424 - RLTR44A LTR ERVK 0 405 1 9 1255 237 294 76 141 chr6 87909613 87909628 -61607409 + RLTR9F LTR ERVK 245 259 -150 9 1255 15834 57 107 96 chr6 87909628 87910361 -61606676 - RLTR44-int LTR ERVK -15 2797 2034 9 1255 230 234 36 83 chr6 87910361 87910445 -61606592 + LTR85c LTR Gypsy? 43 122 -701 9 1255 15834 57 107 96 chr6 87910445 87912379 -61604658 - RLTR44-int LTR ERVK -15 2033 17 9 1255 982 203 34 42 chr6 87912379 87912396 -61604641 + RLTR9D LTR ERVK 177 194 -221 9 1255 2199 98 131 51 chr6 87912396 87912771 -61604266 - RLTR44A LTR ERVK 0 405 1 9 1255 985 174 22 15 chr6 87912771 87912991 -61604046 + RLTR9D LTR ERVK 195 410 -5 9 1255 1028 191 16 0 chr6 87912991 87913180 -61603857 + ORR1C2 LTR MaLR 192 383 -1 9 1255 1920 170 85 0 chr6 87913329 87913671 -61603366 + ORR1C1 LTR MaLR 8 378 0 9 1255 506 204 0 11 chr6 87913994 87914088 -61602949 + B1_Mur2 SINE Alu 2 94 -55 9 1255 320 133 36 12 chr6 87914215 87914299 -61602738 + CT-rich Low_complexity Low_complexity 3 88 0 9 1255 1569 236 108 40 chr6 87914391 87914788 -61602249 + MT2A LTR ERVL 2 417 -116 9 1255 1771 195 93 18 chr6 87914788 87915175 -61601862 + MTD LTR MaLR 4 419 0 9 1255 1569 236 108 40 chr6 87915175 87915243 -61601794 + MT2A LTR ERVL 418 487 -46 9 1255 189 0 0 0 chr6 87915243 87915264 -61601773 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1255 1569 236 108 40 chr6 87915264 87915295 -61601742 + MT2A LTR ERVL 488 532 -1 9 1255 198 0 0 0 chr6 87915523 87915545 -61601492 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1255 524 248 53 0 chr6 87915548 87915661 -61601376 + B1F1 SINE Alu 18 136 -13 9 1255 560 172 0 0 chr6 87915771 87915858 -61601179 + MT2A LTR ERVL 1 87 -446 9 1255 342 115 0 0 chr6 87915858 87915910 -61601127 + (TCC)n Simple_repeat Simple_repeat 2 53 0 9 1255 771 171 14 54 chr6 87915910 87916058 -61600979 - B1_Mur4 SINE Alu -6 144 3 9 1255 1280 34 0 0 chr6 87916095 87916241 -61600796 + B1_Mus1 SINE Alu 1 146 -2 9 1255 1191 184 244 15 chr6 87916272 87916608 -61600429 + MT2A LTR ERVL 83 495 -38 9 1255 305 52 23 0 chr6 87916672 87916720 -61600317 + MT2A LTR ERVL 488 582 -2 9 1255 238 253 179 0 chr6 87916939 87917034 -61600003 + MLT2F LTR ERVL 349 460 -203 9 1255 312 269 0 0 chr6 87918097 87918164 -61598873 + Lx8 LINE L1 7160 7226 -247 9 1255 1328 67 28 0 chr6 87918377 87918557 -61598480 - B2_Mm1a SINE B2 -7 186 2 9 1255 442 273 121 0 chr6 87919549 87919681 -61597356 + B1F1 SINE Alu 2 149 0 9 1255 1137 69 0 27 chr6 87920666 87920815 -61596222 - B1_Mus1 SINE Alu -2 146 2 9 1255 246 191 0 60 chr6 87920992 87921059 -61595978 + RMER1C Other Other 1159 1221 -121 9 1255 4508 10 2 0 chr6 87921072 87921564 -61595473 + MT2_Mm LTR ERVL 1 493 0 9 1255 46115 15 6 0 chr6 87921564 87926890 -61590147 + MERVL-int LTR ERVL 1 5360 -125 9 1255 399 167 46 35 chr6 87926890 87926977 -61590060 + ORR1A3-int LTR MaLR 553 640 -1323 9 1255 305 0 0 0 chr6 87926977 87927015 -61590022 + MERVL-int LTR ERVL 5448 5485 0 9 1255 4508 10 2 0 chr6 87927015 87927507 -61589530 + MT2_Mm LTR ERVL 1 493 0 9 1255 207 162 0 0 chr6 87927571 87927608 -61589429 + CT-rich Low_complexity Low_complexity 3 39 0 9 1255 247 152 134 15 chr6 87928988 87929055 -61587982 - B2_Mm2 SINE B2 -120 75 1 9 1255 280 218 122 56 chr6 87929087 87929194 -61587843 - MLT1K LTR MaLR -413 182 69 9 1255 715 63 21 0 chr6 87929199 87929294 -61587743 + MTC LTR MaLR 1 97 -324 9 1255 1064 31 0 0 chr6 87929295 87929422 -61587615 + B1_Mus1 SINE Alu 22 148 0 9 1255 201 74 0 0 chr6 87929422 87929449 -61587588 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1255 249 269 45 28 chr6 87931391 87931567 -61585470 + (CGGGG)n Simple_repeat Simple_repeat 1 179 0 9 1255 261 0 0 0 chr6 87932966 87932995 -61584042 + (CTG)n Simple_repeat Simple_repeat 3 31 0 9 1255 3747 143 195 16 chr6 87933418 87934183 -61582854 + RMER19B LTR ERVK 1 902 0 9 1255 438 20 0 0 chr6 87934261 87934312 -61582725 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1255 550 295 24 32 chr6 87934353 87934603 -61582434 - B4A SINE B4 -38 254 19 9 1255 264 318 0 0 chr6 87934616 87934682 -61582355 + polypyrimidine Low_complexity Low_complexity 5 70 0 9 1255 270 258 75 11 chr6 87935079 87935173 -61581864 - B4A SINE B4 -14 278 179 9 1255 693 219 23 15 chr6 87935138 87935268 -61581769 - B3A SINE B2 -67 131 1 9 1255 576 260 38 130 chr6 87935272 87935511 -61581526 - B4A SINE B4 -66 226 10 9 1255 1275 27 7 0 chr6 87935586 87935732 -61581305 + B1_Mm SINE Alu 1 147 0 9 1255 315 49 0 0 chr6 87936034 87936075 -61580962 + (TTG)n Simple_repeat Simple_repeat 2 42 0 9 1255 1161 69 7 0 chr6 87936112 87936256 -61580781 - B1_Mus1 SINE Alu -2 146 2 9 1255 516 270 9 9 chr6 87936864 87936976 -61580061 - RSINE1 SINE B4 -20 145 34 9 1255 1083 95 155 21 chr6 87937644 87937838 -61579199 - URR1B DNA MER1_type -5 220 1 9 1255 578 235 185 36 chr6 87939717 87940079 -61576958 - RMER10A LTR ERVL 0 442 27 9 1255 359 65 0 0 chr6 87941079 87941125 -61575912 + L2a LINE L2 3379 3424 -2 9 1255 196 184 58 58 chr6 87941771 87941823 -61575214 - MIR3 SINE MIR -50 158 107 9 1255 243 88 0 0 chr6 87942611 87942645 -61574392 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1255 216 0 75 25 chr6 87943102 87943142 -61573895 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 9 1255 569 234 13 40 chr6 87943312 87943329 -61573708 + ID_B1 SINE B4 78 224 0 9 1255 722 194 22 0 chr6 87943329 87943463 -61573574 + B1_Mm SINE Alu 11 147 0 9 1255 356 56 37 0 chr6 87944630 87944684 -61572353 + (CAGA)n Simple_repeat Simple_repeat 2 57 0 9 1255 182 33 0 62 chr6 87944972 87945004 -61572033 + (CAAAAA)n Simple_repeat Simple_repeat 4 33 0 9 1255 1478 73 16 0 chr6 87945260 87945451 -61571586 - B2_Mm2 SINE B2 0 195 2 9 1255 303 161 18 0 chr6 87945488 87945544 -61571493 - B3A SINE B2 -59 139 83 9 1255 235 242 15 29 chr6 87946870 87946938 -61570099 + ID2 SINE ID 16 82 -1 9 1255 189 139 0 0 chr6 87947155 87947198 -61569839 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1255 273 0 0 0 chr6 87947223 87947252 -61569785 - LSU-rRNA_Hsa rRNA rRNA -1 5034 5006 9 1255 1560 57 5 0 chr6 87947257 87947449 -61569588 - B2_Mm1a SINE B2 0 193 1 9 1255 975 52 0 0 chr6 87947449 87947564 -61569473 - LSU-rRNA_Hsa rRNA rRNA -16 5019 4905 9 1255 798 83 16 8 chr6 87947838 87947959 -61569078 + B1_Mus1 SINE Alu 1 122 -26 9 1255 267 246 182 22 chr6 87948751 87948888 -61568149 + RLTR42-int LTR ERVK 1114 1272 -4250 9 1256 250 143 32 0 chr6 87950225 87950288 -61566749 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1256 255 188 0 20 chr6 87951146 87951195 -61565842 - L1MB5 LINE L1 -124 6050 6003 9 1256 226 228 0 66 chr6 87951235 87951296 -61565741 - ID SINE ID -162 62 6 9 1256 218 162 0 0 chr6 87951305 87951342 -61565695 - PB1D10 SINE Alu -16 101 65 9 1256 777 229 87 36 chr6 87951696 87951891 -61565146 - ID_B1 SINE B4 -2 222 18 9 1256 249 200 64 103 chr6 87951988 87952066 -61564971 + MLT1A0 LTR MaLR 271 345 -20 9 1256 1197 103 0 28 chr6 87952171 87952351 -61564686 + B2_Mm2 SINE B2 2 176 -19 9 1256 592 166 368 18 chr6 87952363 87952529 -61564508 + URR1A DNA MER1_type 3 226 0 9 1256 409 222 12 0 chr6 87952731 87952812 -61564225 - ID_B1 SINE B4 -56 168 87 9 1256 296 294 128 12 chr6 87952819 87952905 -61564132 - PB1D10 SINE Alu -21 96 1 9 1256 285 276 68 11 chr6 87953426 87953514 -61563523 - PB1D10 SINE Alu -20 97 5 9 1256 427 214 0 0 chr6 87955346 87955416 -61561621 - PB1D10 SINE Alu -27 90 21 9 1256 230 278 58 58 chr6 87955416 87955449 -61561588 + YREP_Mm Unknown Unknown 228 330 -1482 9 1256 218 284 29 29 chr6 87955798 87955867 -61561170 - ID4 SINE ID -9 74 6 9 1256 1342 62 39 6 chr6 87955912 87956090 -61560947 - B2_Mm2 SINE B2 -8 187 4 9 1256 745 189 115 11 chr6 87956240 87956422 -61560615 + B3 SINE B2 4 204 -12 9 1256 341 330 10 12 chr6 87958019 87958139 -61558898 + B1F SINE Alu 1 119 -1 9 1256 559 234 32 84 chr6 87958633 87958787 -61558250 - B1_Mur2 SINE Alu -2 147 2 9 1256 216 393 0 12 chr6 87959151 87959236 -61557801 + ID_B1 SINE B4 75 158 -66 9 1256 260 308 87 11 chr6 87959169 87959261 -61557776 + PB1D10 SINE Alu 11 109 -8 9 1256 289 336 34 81 chr6 87959821 87959970 -61557067 - B4A SINE B4 -150 142 1 1 1256 398 206 129 11 chr6 87960058 87960151 -61556886 + PB1D9 SINE Alu 13 116 -4 1 1256 591 15 0 0 chr6 87960227 87960295 -61556742 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1256 189 0 0 0 chr6 87960333 87960354 -61556683 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1256 1262 48 0 0 chr6 87960354 87960501 -61556536 - B1_Mus1 SINE Alu 0 148 2 1 1256 547 199 289 7 chr6 87960785 87960937 -61556100 - B3 SINE B2 -2 214 20 1 1256 502 154 9 9 chr6 87961218 87961233 -61555804 + polypurine Low_complexity Low_complexity 4 19 0 1 1256 1297 97 53 11 chr6 87961233 87961420 -61555617 + B2_Mm2 SINE B2 1 195 0 1 1256 502 154 9 9 chr6 87961420 87961472 -61555565 + polypurine Low_complexity Low_complexity 20 71 0 1 1256 866 10 10 0 chr6 87961472 87961575 -61555462 + (GGGAA)n Simple_repeat Simple_repeat 2 105 0 1 1256 502 154 9 9 chr6 87961575 87961611 -61555426 + polypurine Low_complexity Low_complexity 72 107 0 1 1256 1048 110 7 14 chr6 87961615 87961762 -61555275 + B1_Mus2 SINE Alu 1 146 -1 1 1256 307 276 13 13 chr6 87962511 87962588 -61554449 + ID4_ SINE ID 2 78 -5 1 1256 367 297 102 0 chr6 87962778 87962906 -61554131 + B1F1 SINE Alu 1 141 -8 1 1256 273 292 145 7 chr6 87962931 87963069 -61553968 + RSINE1 SINE B4 1 157 -8 1 1256 674 82 0 10 chr6 87963998 87964097 -61552940 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 1 1256 409 254 164 0 chr6 87964100 87964222 -61552815 - B1_Mus2 SINE Alu -5 142 1 1 1256 1552 176 8 19 chr6 87964245 87964511 -61552526 + MTC LTR MaLR 1 263 -158 1 1256 1202 48 0 0 chr6 87964583 87964729 -61552308 + B1_Mus2 SINE Alu 2 147 0 1 1256 423 306 37 158 chr6 87965377 87965632 -61551405 - MTEa LTR MaLR -60 319 97 1 1256 793 248 6 0 chr6 87965632 87965793 -61551244 + RSINE1 SINE B4 2 163 -2 1 1256 423 318 19 172 chr6 87965793 87965918 -61551119 - MTEa LTR MaLR -278 101 3 1 1256 392 0 0 20 chr6 87966107 87966156 -61550881 + (CATA)n Simple_repeat Simple_repeat 1 48 0 1 1256 614 169 16 71 chr6 87966245 87966372 -61550665 - PB1D9 SINE Alu 0 120 1 1 1256 492 200 28 74 chr6 87966428 87966536 -61550501 - PB1D9 SINE Alu -5 115 13 1 1256 273 224 52 13 chr6 87966806 87966883 -61550154 + ID2 SINE ID 1 80 -3 1 1256 422 99 0 112 chr6 87967495 87967575 -61549462 + B1_Mur2 SINE Alu 79 149 0 1 1256 882 184 12 21 chr6 87967892 87968079 -61548958 + B2_Mm2 SINE B2 2 190 -26 1 1256 581 171 174 47 chr6 87968171 87968343 -61548694 + B2_Mm2 SINE B2 1 194 -1 1 1256 428 326 62 0 chr6 87968909 87969053 -61547984 + RSINE1 SINE B4 4 156 -9 1 1256 234 0 0 0 chr6 87969967 87969993 -61547044 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1256 716 260 35 25 chr6 87970090 87970291 -61546746 - B3 SINE B2 -13 203 1 1 1256 202 205 0 0 chr6 87970745 87970784 -61546253 - L2b LINE L2 -302 3073 3035 1 1256 1376 95 21 0 chr6 87971344 87971533 -61545504 + B2_Mm2 SINE B2 2 194 -1 1 1256 1227 41 0 27 chr6 87971783 87971933 -61545104 + B1_Mm SINE Alu 2 147 0 1 1256 661 132 43 9 chr6 87972534 87972649 -61544388 - PB1D9 SINE Alu -1 119 1 1 1256 323 298 162 29 chr6 87973126 87973299 -61543738 - MER3 DNA MER1_type -10 199 4 1 1256 257 325 157 0 chr6 87973814 87973897 -61543140 + ID_B1 SINE B4 85 180 -44 1 1256 413 299 25 8 chr6 87973939 87974057 -61542980 + RSINE1 SINE B4 2 121 -44 1 1256 1197 126 135 0 chr6 87974060 87974267 -61542770 - MT2B2 LTR ERVL 0 584 350 1 1256 420 280 151 0 chr6 87974387 87974573 -61542464 - L1MA4 LINE L1 -288 6012 5799 1 1256 393 22 0 0 chr6 87974579 87974625 -61542412 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1256 2615 63 167 0 chr6 87974683 87975061 -61541976 + MT2B2 LTR ERVL 1 441 -143 1 1256 446 212 159 9 chr6 87975198 87975360 -61541677 + L1MA8 LINE L1 6043 6236 -76 1 1256 215 31 31 0 chr6 87975361 87975393 -61541644 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 1256 1208 48 7 0 chr6 87975435 87975581 -61541456 + B1_Mus2 SINE Alu 1 147 0 1 1256 527 246 100 0 chr6 87975751 87975881 -61541156 + ID_B1 SINE B4 80 222 -2 1 1256 787 164 151 0 chr6 87975995 87976141 -61540896 + B3 SINE B2 49 216 0 1 1256 1279 137 16 0 chr6 87976163 87976353 -61540684 - B2_Mm2 SINE B2 -1 194 2 1 1256 733 164 28 56 chr6 87976354 87976496 -61540541 + B1_Mur4 SINE Alu 13 150 0 1 1256 340 274 18 54 chr6 87977053 87977165 -61539872 - PB1D7 SINE Alu -1 119 12 1 1256 651 221 156 0 chr6 87977269 87977423 -61539614 + B3 SINE B2 1 178 -38 1 1256 1373 77 60 0 chr6 87978132 87978314 -61538723 - B2_Mm2 SINE B2 -1 194 2 1 1256 875 128 8 8 chr6 87978613 87978747 -61538290 + B2_Mm2 SINE B2 2 135 -60 1 1256 355 197 0 0 chr6 87978807 87978868 -61538169 + B3A SINE B2 2 62 -136 1 1256 997 92 28 14 chr6 87978990 87979134 -61537903 + B1_Mus1 SINE Alu 1 146 -2 1 1256 338 233 68 17 chr6 87979262 87979380 -61537657 - MLT2B4 LTR ERVL -416 140 17 1 1256 633 291 69 8 chr6 87979476 87979722 -61537315 + BGLII_B LTR ERVK 154 414 -27 1 1256 887 149 110 6 chr6 87979775 87979957 -61537080 - RLTR11A2 LTR ERVK 0 527 327 1 1256 281 333 41 49 chr6 87979959 87980082 -61536955 + B4A SINE B4 69 190 -102 1 1256 284 127 18 0 chr6 87980166 87980221 -61536816 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1256 22 0 0 0 chr6 87980300 87980322 -61536715 + AT_rich Low_complexity Low_complexity 1 22 0 1 1256 1115 56 20 27 chr6 87980333 87980480 -61536557 + B1_Mus2 SINE Alu 1 146 -1 1 1256 278 314 66 33 chr6 87980597 87980719 -61536318 - PB1 SINE Alu -1 126 1 1 1256 247 307 11 74 chr6 87980719 87980751 -61536286 - B4 SINE B4 -210 82 57 1 1256 419 278 0 73 chr6 87980842 87980966 -61536071 - PB1D10 SINE Alu 0 117 3 1 1256 905 133 21 7 chr6 87980998 87981142 -61535895 + B1_Mus2 SINE Alu 2 147 0 1 1256 627 144 25 255 chr6 87981161 87981357 -61535680 + RMER19B LTR ERVK 1 151 -751 1 1256 616 197 75 8 chr6 87981357 87981490 -61535547 - B1_Mur2 SINE Alu -7 142 1 1 1256 723 275 86 62 chr6 87981517 87981695 -61535342 + MTEa LTR MaLR 96 286 -93 1 1256 1341 63 31 36 chr6 87981695 87981891 -61535146 - B2_Mm2 SINE B2 0 195 1 1 1256 723 275 86 62 chr6 87981891 87981968 -61535069 + MTEa LTR MaLR 287 357 -22 1 1256 722 238 75 27 chr6 87981984 87982170 -61534867 + B3 SINE B2 16 210 -6 1 1256 414 0 0 0 chr6 87982189 87982235 -61534802 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1256 1523 168 139 9 chr6 87982428 87982765 -61534272 + ORR1C2 LTR MaLR 1 381 -3 1 1256 560 237 8 8 chr6 87982945 87983064 -61533973 + B1_Mur4 SINE Alu 24 142 -8 1 1256 657 192 0 40 chr6 87983251 87983376 -61533661 + B1_Mur4 SINE Alu 29 148 -2 1 1256 265 269 25 25 chr6 87983405 87983485 -61533552 + ID4_ SINE ID 1 80 -3 1 1256 1224 71 0 0 chr6 87983848 87984375 -61532662 + (CA)n Simple_repeat Simple_repeat 1 527 0 1 1256 836 219 101 5 chr6 87984806 87984994 -61532043 + B3 SINE B2 9 214 -2 1 1256 219 220 0 0 chr6 87985158 87985249 -61531788 + (TG)n Simple_repeat Simple_repeat 1 91 0 1 1256 1009 223 50 65 chr6 87985255 87985533 -61531504 - B4A SINE B4 0 292 19 1 1256 207 284 30 0 chr6 87985908 87985975 -61531062 + GA-rich Low_complexity Low_complexity 5 73 0 1 1256 380 209 9 79 chr6 87986088 87986106 -61530931 + MT2B LTR ERVL 148 253 -348 1 1256 537 146 42 0 chr6 87986106 87986202 -61530835 + B1_Mur3 SINE Alu 1 100 -49 1 1256 637 101 0 0 chr6 87986244 87986333 -61530704 + 4.5SRNA scRNA scRNA 5 93 -1 1 1256 1171 54 132 0 chr6 87986334 87986500 -61530537 + B2_Mm2 SINE B2 1 188 -7 1 1256 225 269 19 0 chr6 87986526 87986578 -61530459 + BC1_Mm scRNA scRNA 9 61 -91 1 1256 212 190 15 108 chr6 87986594 87986659 -61530378 + PB1D10 SINE Alu 59 117 0 1 1256 279 0 0 0 chr6 87986815 87986846 -61530191 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1256 862 65 0 0 chr6 87986858 87986965 -61530072 - B1_Mus1 SINE Alu -12 136 30 1 1256 1362 67 22 0 chr6 87986965 87987143 -61529894 - B2_Mm2 SINE B2 -12 183 2 1 1256 242 169 185 0 chr6 87988946 87989011 -61528026 + MLT1A LTR MaLR 62 138 -252 1 1256 300 236 0 0 chr6 87989109 87989164 -61527873 + MLT1A LTR MaLR 286 340 -34 1 1256 907 101 65 0 chr6 87989235 87989373 -61527664 + B1_Mus2 SINE Alu 1 147 0 1 1256 418 228 9 65 chr6 87989391 87989499 -61527538 - PB1 SINE Alu -14 113 12 1 1256 252 253 11 57 chr6 87989564 87989652 -61527385 + L1ME3A LINE L1 5888 5971 -202 1 1256 468 143 214 0 chr6 87989851 87989949 -61527088 + PB1D9 SINE Alu 2 120 0 1 1256 687 175 49 42 chr6 87989961 87990104 -61526933 + B1_Mus1 SINE Alu 5 148 0 1 1256 498 203 129 30 chr6 87990516 87990648 -61526389 - B1_Mur2 SINE Alu 0 149 5 1 1256 1266 40 0 0 chr6 87990742 87990890 -61526147 + B1_Mus1 SINE Alu 1 148 0 1 1256 243 0 0 0 chr6 87990890 87990917 -61526120 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1256 301 259 250 75 chr6 87992911 87992996 -61524041 + B4 SINE B4 1 220 -71 1 1256 780 69 0 0 chr6 87992996 87993098 -61523939 + B1_Mus2 SINE Alu 40 141 -6 1 1256 246 32 0 0 chr6 87993099 87993130 -61523907 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1 1256 199 151 0 70 chr6 87993191 87993248 -61523789 + (CGTG)n Simple_repeat Simple_repeat 4 56 0 1 1256 393 279 20 111 chr6 87993249 87993402 -61523635 + B4A SINE B4 154 292 0 1 1256 322 281 52 20 chr6 87994445 87994599 -61522438 + MIR SINE MIR 29 187 -81 1 1256 201 217 72 0 chr6 87994950 87995019 -61522018 + (CCCGG)n Simple_repeat Simple_repeat 1 74 0 1 1256 1788 129 41 17 chr6 87995762 87996053 -61520984 + RLTR14 LTR ERV1 85 382 0 1 1256 307 340 33 59 chr6 87996210 87996363 -61520674 + L1MC4a LINE L1 5785 5933 -1949 1 1256 300 322 63 81 chr6 87996464 87996687 -61520350 - MLT2F LTR ERVL -76 587 369 1 1256 374 248 65 19 chr6 87996696 87996803 -61520234 + B3 SINE B2 99 210 -6 1 1256 428 290 39 104 chr6 87996825 87996979 -61520058 + B4A SINE B4 76 219 -73 1 1256 859 175 0 7 chr6 87996843 87996987 -61520050 + B1_Mur1 SINE Alu 6 148 -1 1 1256 1141 78 0 0 chr6 87996988 87997129 -61519908 + B1_Mm SINE Alu 1 141 -6 1 1256 221 57 29 0 chr6 87997130 87997165 -61519872 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1256 243 157 39 19 chr6 87997182 87997234 -61519803 - B1_Mus2 SINE Alu 0 147 95 1 1256 251 184 0 0 chr6 87997219 87997257 -61519780 - B1_Mur4 SINE Alu -108 42 5 1 1256 320 294 9 19 chr6 87997416 87997531 -61519506 + B1F1 SINE Alu 1 114 -6 1 1256 249 345 129 9 chr6 87997571 87997796 -61519241 - L2b LINE L2 -204 3171 2920 1 1256 402 39 0 0 chr6 87997871 87997923 -61519114 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1256 183 100 0 0 chr6 87998138 87998168 -61518869 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 1256 364 213 0 51 chr6 87998176 87998255 -61518782 - B1_Mur3 SINE Alu -12 137 63 1 1256 180 0 0 0 chr6 87998280 87998300 -61518737 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1256 258 270 0 16 chr6 87998310 87998359 -61518678 + B1F2 SINE Alu 1 48 -101 1 1256 883 252 54 25 chr6 87998359 87998673 -61518364 + RLTR15 LTR ERVK 1 323 -36 1 1256 343 207 58 47 chr6 87998694 87998780 -61518257 + MT2B LTR ERVL 172 258 -343 1 1256 427 191 116 11 chr6 87998719 87998814 -61518223 + B1_Mur4 SINE Alu 44 148 -2 1 1256 648 198 202 33 chr6 87999423 87999606 -61517431 - B3 SINE B2 -2 214 1 1 1256 477 269 43 65 chr6 87999633 87999772 -61517265 + ID_B1 SINE B4 82 217 -7 1 1256 645 268 6 45 chr6 87999798 87999974 -61517063 - MLT1A1 LTR MaLR -25 383 215 1 1256 360 0 0 0 chr6 88000095 88000135 -61516902 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1256 1011 125 0 0 chr6 88000173 88000317 -61516720 - B1_Mus1 SINE Alu 0 148 5 2 1256 893 196 12 18 chr6 88000344 88000515 -61516522 - B3 SINE B2 0 216 47 3 1256 747 244 99 8 chr6 88000514 88000600 -61516437 - MTD LTR MaLR -196 211 124 4 1256 288 0 0 0 chr6 88000600 88000632 -61516405 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 5 1256 747 216 121 6 chr6 88000632 88000749 -61516288 - MTD LTR MaLR -281 138 2 4 1256 213 241 52 0 chr6 88000811 88000869 -61516168 + (CGTG)n Simple_repeat Simple_repeat 1 61 0 6 1256 225 189 0 0 chr6 88000926 88000963 -61516074 - U2 snRNA snRNA -151 37 1 7 1256 594 170 87 26 chr6 88001489 88001604 -61515433 + B1_Mur4 SINE Alu 22 143 -7 8 1256 1167 76 0 0 chr6 88001616 88001761 -61515276 + B1_Mus2 SINE Alu 1 145 -2 9 1256 336 298 46 80 chr6 88002565 88002740 -61514297 - L2a LINE L2 0 3426 3258 1 1256 240 260 0 0 chr6 88002743 88002793 -61514244 + ID4_ SINE ID 34 83 0 1 1256 331 281 22 33 chr6 88003269 88003361 -61513676 + 5S rRNA rRNA 1 91 -30 1 1256 260 300 18 123 chr6 88003361 88003383 -61513654 + AmnSINE1 SINE SINE 1 102 -473 1 1256 477 0 0 0 chr6 88004747 88004800 -61512237 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1256 394 251 134 4 chr6 88004842 88004934 -61512103 + B1F SINE Alu 3 105 -44 1 1256 811 164 15 0 chr6 88004934 88005068 -61511969 + B1_Mur1 SINE Alu 4 139 -10 1 1256 351 282 94 86 chr6 88005068 88005103 -61511934 + B1F1 SINE Alu 106 131 -18 1 1256 1208 91 0 6 chr6 88005106 88005283 -61511754 + (TTCC)n Simple_repeat Simple_repeat 2 177 0 1 1256 324 0 0 0 chr6 88005457 88005493 -61511544 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1256 236 214 17 67 chr6 88005680 88005740 -61511297 - ID SINE ID -141 83 27 1 1256 23 33 0 0 chr6 88005752 88005782 -61511255 + AT_rich Low_complexity Low_complexity 1 30 0 2 1256 341 276 144 17 chr6 88005828 88005946 -61511091 - RSINE1 SINE B4 -31 134 2 2 1256 616 235 168 40 chr6 88006006 88006179 -61510858 - B3A SINE B2 -3 195 1 2 1256 544 226 105 0 chr6 88006326 88006450 -61510587 - ID_B1 SINE B4 -1 223 87 2 1256 334 208 200 37 chr6 88006739 88006874 -61510163 + LTR48 LTR ERV1 6 162 -625 2 1256 700 256 54 58 chr6 88007191 88007432 -61509605 + ORR1E LTR MaLR 23 262 -108 2 1256 251 157 20 0 chr6 88007440 88007491 -61509546 + CT-rich Low_complexity Low_complexity 1 52 0 2 1256 259 233 9 217 chr6 88007492 88007607 -61509430 + ORR1E LTR MaLR 268 358 -1 2 1256 740 145 98 15 chr6 88007793 88007926 -61509111 + B1_Mur4 SINE Alu 6 149 -1 2 1256 292 231 183 65 chr6 88007800 88007953 -61509084 + MT2B LTR ERVL 175 345 -256 2 1256 405 221 81 0 chr6 88008014 88008100 -61508937 - PB1D9 SINE Alu -27 93 1 2 1256 907 254 30 0 chr6 88008103 88008304 -61508733 - ID_B1 SINE B4 -1 223 17 3 1256 434 286 8 40 chr6 88008402 88008526 -61508511 - B1F1 SINE Alu -29 120 1 3 1256 313 229 68 0 chr6 88008538 88008627 -61508410 - L1M3 LINE L1 -388 5790 5695 3 1256 260 297 26 39 chr6 88008661 88008738 -61508299 - ID4_ SINE ID -6 77 2 3 1256 264 59 0 0 chr6 88008795 88008829 -61508208 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 1256 1204 69 6 0 chr6 88008829 88008988 -61508049 - B2_Mm1a SINE B2 -33 160 1 3 1256 685 249 15 92 chr6 88009019 88009214 -61507823 - B3 SINE B2 0 216 37 3 1256 702 201 0 86 chr6 88009233 88009396 -61507641 + B1_Mur2 SINE Alu 1 149 0 3 1256 4309 146 7 10 chr6 88009535 88010229 -61506808 - RLTR17 LTR ERVK 0 692 1 3 1256 1233 61 0 0 chr6 88010287 88010434 -61506603 - B1_Mus1 SINE Alu 0 148 2 3 1256 231 36 0 0 chr6 88011003 88011031 -61506006 + (TGG)n Simple_repeat Simple_repeat 1 28 0 4 1256 214 274 0 16 chr6 88011043 88011106 -61505931 + PB1D10 SINE Alu 22 83 -34 4 1256 1659 37 0 0 chr6 88011118 88011306 -61505731 - B2_Mm1a SINE B2 -4 189 2 4 1256 1104 210 5 5 chr6 88011491 88011706 -61505331 + B3 SINE B2 1 215 -1 4 1256 1012 115 0 13 chr6 88011901 88012051 -61504986 - B1_Mur3 SINE Alu 0 149 2 4 1256 381 292 113 84 chr6 88012125 88012338 -61504699 + MER21B LTR ERV1 303 521 -342 4 1256 276 308 6 64 chr6 88012492 88012648 -61504389 + L2 LINE L2 2932 3078 -341 4 1256 292 236 41 14 chr6 88013036 88013109 -61503928 + MLT1A1 LTR MaLR 296 370 -38 4 1256 434 49 16 0 chr6 88013255 88013316 -61503721 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1256 293 47 23 0 chr6 88013400 88013443 -61503594 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1256 462 319 17 0 chr6 88013520 88013639 -61503398 - RSINE1 SINE B4 0 165 45 5 1256 228 321 16 138 chr6 88013633 88013660 -61503377 - B4 SINE B4 -135 157 131 5 1256 2171 117 90 11 chr6 88013660 88014014 -61503023 - RLTR14 LTR ERV1 0 382 1 5 1256 279 321 16 138 chr6 88014014 88014109 -61502928 - B4A SINE B4 -146 146 50 5 1256 1469 214 102 39 chr6 88014111 88014495 -61502542 + MTD LTR MaLR 5 412 -7 5 1256 216 311 33 0 chr6 88014489 88014550 -61502487 - B4 SINE B4 -228 64 2 5 1256 1136 76 7 0 chr6 88014631 88014776 -61502261 - B1_Mus2 SINE Alu -1 146 1 5 1256 291 146 0 0 chr6 88014806 88014854 -61502183 + Lx4A LINE L1 7009 7056 -2 5 1256 198 0 0 0 chr6 88014950 88014972 -61502065 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 5 1256 1195 168 15 5 chr6 88015679 88015877 -61501160 - B3 SINE B2 0 216 17 5 1256 681 13 0 0 chr6 88015879 88015957 -61501080 + (TC)n Simple_repeat Simple_repeat 2 79 0 5 1256 21 36 0 0 chr6 88015967 88015995 -61501042 + AT_rich Low_complexity Low_complexity 1 28 0 5 1256 365 308 156 16 chr6 88016134 88016256 -61500781 - B1F SINE Alu -5 144 6 6 1256 811 219 55 0 chr6 88016366 88016561 -61500476 + B3 SINE B2 1 206 -10 6 1256 543 31 0 0 chr6 88016561 88016626 -61500411 + (TAA)n Simple_repeat Simple_repeat 2 66 0 6 1256 310 327 58 119 chr6 88016635 88016913 -61500124 + MLT1J LTR MaLR 104 364 -148 6 1256 225 284 58 99 chr6 88017042 88017092 -61499945 + YREP_Mm Unknown Unknown 132 293 -1516 6 1256 495 243 8 67 chr6 88017092 88017211 -61499826 - ID_B1 SINE B4 -8 216 105 6 1256 240 213 0 0 chr6 88017245 88017306 -61499731 + CT-rich Low_complexity Low_complexity 4 64 0 6 1256 1301 99 16 0 chr6 88017335 88017517 -61499520 - B2_Mm1t SINE B2 -7 186 2 6 1256 1041 105 0 0 chr6 88017518 88017671 -61499366 + (TTCC)n Simple_repeat Simple_repeat 2 154 0 6 1256 321 324 39 89 chr6 88017673 88017876 -61499161 - ID_B1 SINE B4 -29 195 3 6 1256 275 273 79 20 chr6 88017908 88018009 -61499028 - PB1D10 SINE Alu -8 109 3 7 1256 275 89 591 27 chr6 88018039 88018132 -61498905 - B2_Mm2 SINE B2 -3 192 48 7 1256 1329 91 11 0 chr6 88018176 88018352 -61498685 - B2_Mm1t SINE B2 -14 179 2 7 1256 818 119 92 43 chr6 88018363 88018504 -61498533 - B1_Mur4 SINE Alu 0 150 3 7 1256 887 299 58 42 chr6 88018578 88019090 -61497947 + L1MB2 LINE L1 5657 6167 -4 7 1256 517 202 36 58 chr6 88019142 88019279 -61497758 + B1_Mus2 SINE Alu 1 134 -13 7 1256 252 130 0 0 chr6 88019289 88019335 -61497702 + (GAAA)n Simple_repeat Simple_repeat 1 46 0 7 1256 437 252 26 9 chr6 88019434 88019550 -61497487 - PB1D7 SINE Alu -2 118 1 7 1256 317 250 13 13 chr6 88020072 88020149 -61496888 + ID_B1 SINE B4 94 170 -54 7 1256 372 153 0 0 chr6 88020296 88020381 -61496656 + CT-rich Low_complexity Low_complexity 2 86 0 7 1256 343 249 67 39 chr6 88020383 88020510 -61496527 - B1F SINE Alu -22 127 1 8 1256 267 31 0 0 chr6 88020512 88020544 -61496493 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 8 1256 389 183 138 2 chr6 88020554 88020653 -61496384 - B1_Mur4 SINE Alu -2 118 3 8 1256 270 0 0 0 chr6 88020659 88020689 -61496348 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1256 1090 89 7 0 chr6 88020689 88020835 -61496202 - B1_Mus2 SINE Alu 0 147 1 8 1256 1081 81 0 0 chr6 88021583 88021719 -61495318 + B1_Mus1 SINE Alu 2 137 -11 8 1256 396 0 0 0 chr6 88021719 88021763 -61495274 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 8 1256 309 250 0 0 chr6 88021886 88021946 -61495091 + RSINE1 SINE B4 11 70 -95 8 1256 315 0 0 0 chr6 88022011 88022046 -61494991 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1256 536 217 64 14 chr6 88022375 88022515 -61494522 - B1_Mur1 SINE Alu -1 148 2 8 1256 622 249 179 36 chr6 88022528 88022724 -61494313 - ID_B1 SINE B4 0 224 1 9 1256 585 239 98 63 chr6 88022734 88022908 -61494129 - ID_B1 SINE B4 -2 222 43 9 1256 608 182 9 9 chr6 88023027 88023138 -61493899 + B1_Mur1 SINE Alu 39 149 0 9 1256 189 0 0 0 chr6 88023341 88023362 -61493675 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1256 413 241 27 27 chr6 88023581 88023692 -61493345 + PB1D7 SINE Alu 3 113 -7 9 1256 484 234 76 21 chr6 88023697 88023841 -61493196 + ID_B1 SINE B4 73 224 0 9 1256 1599 52 0 0 chr6 88024011 88024204 -61492833 + B2_Mm1t SINE B2 1 193 0 9 1256 1334 69 31 26 chr6 88024407 88024562 -61492475 + B2_Mm2 SINE B2 1 159 -36 9 1256 276 30 0 0 chr6 88024562 88024595 -61492442 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 9 1256 1334 69 31 26 chr6 88024595 88024632 -61492405 + B2_Mm2 SINE B2 160 193 -2 9 1256 1237 34 0 7 chr6 88024650 88024798 -61492239 + B1_Mus2 SINE Alu 1 147 0 9 1256 391 210 0 24 chr6 88025573 88025656 -61491381 - B3 SINE B2 -6 210 130 1 1256 440 299 50 21 chr6 88025670 88025810 -61491227 - B1F SINE Alu 0 149 6 1 1256 647 192 6 171 chr6 88026255 88026387 -61490650 + B1_Mur2 SINE Alu 3 109 -40 1 1256 1517 155 108 88 chr6 88026387 88026784 -61490253 - RMER17C LTR ERVK -3 407 3 1 1256 647 192 6 171 chr6 88026784 88026827 -61490210 + B1_Mur2 SINE Alu 110 149 0 1 1256 274 173 0 71 chr6 88027348 88027404 -61489633 + B1_Mur1 SINE Alu 98 149 0 1 1256 453 296 103 38 chr6 88027417 88027680 -61489357 + B4 SINE B4 4 283 -9 1 1256 348 88 0 0 chr6 88027716 88027773 -61489264 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1256 849 138 26 11 chr6 88027851 88028022 -61489015 - B3 SINE B2 -13 182 3 1 1256 182 86 0 79 chr6 88028117 88028155 -61488882 + A-rich Low_complexity Low_complexity 1 35 0 1 1256 908 159 0 35 chr6 88028170 88028313 -61488724 + B1_Mur4 SINE Alu 1 138 -12 1 1256 198 0 0 0 chr6 88028313 88028335 -61488702 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 1256 636 136 0 21 chr6 88028338 88028548 -61488489 + GA-rich Low_complexity Low_complexity 1 205 0 1 1256 244 309 34 68 chr6 88028599 88028717 -61488320 - PB1D10 SINE Alu 0 117 4 1 1256 907 204 94 0 chr6 88028756 88028937 -61488100 - B3 SINE B2 -14 202 5 1 1256 282 180 0 0 chr6 88029000 88029061 -61487976 + CT-rich Low_complexity Low_complexity 3 63 0 1 1256 607 248 14 7 chr6 88029067 88029209 -61487828 - B1_Mur3 SINE Alu -5 144 2 1 1256 341 296 193 9 chr6 88029667 88029895 -61487142 - L1M4 LINE L1 -5791 751 482 1 1256 454 296 61 0 chr6 88030148 88030280 -61486757 + B1F SINE Alu 1 140 -9 1 1256 1441 186 12 0 chr6 88030349 88030597 -61486440 - MTD LTR MaLR -60 359 109 1 1256 665 211 0 0 chr6 88030598 88030712 -61486325 + Lx9 LINE L1 6611 6724 -920 1 1256 479 236 73 0 chr6 88031237 88031347 -61485690 + Lx9 LINE L1 6719 6836 -808 1 1256 512 254 0 8 chr6 88031347 88031466 -61485571 - MTD LTR MaLR -301 118 1 1 1256 315 0 0 0 chr6 88031692 88031727 -61485310 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1 1256 395 307 72 14 chr6 88031813 88031952 -61485085 - L1M5 LINE L1 -801 5345 5199 1 1256 233 319 0 27 chr6 88031968 88032042 -61484995 - tRNA-Ala-GCY_ tRNA tRNA -2 73 2 1 1256 1159 245 53 32 chr6 88032106 88032388 -61484649 - B4 SINE B4 0 292 5 1 1256 732 252 29 15 chr6 88032437 88032642 -61484395 - B3 SINE B2 -6 210 3 1 1256 236 250 0 40 chr6 88032842 88032892 -61484145 - B1F1 SINE Alu -93 56 9 1 1256 28 29 0 0 chr6 88032906 88032941 -61484096 + AT_rich Low_complexity Low_complexity 1 35 0 1 1256 186 174 0 0 chr6 88032953 88032999 -61484038 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 1 1256 524 248 161 0 chr6 88033015 88033152 -61483885 - B3A SINE B2 -34 164 6 1 1256 650 271 89 11 chr6 88033175 88033354 -61483683 - MER58A DNA MER1_type -31 193 1 1 1256 651 60 0 0 chr6 88033599 88033683 -61483354 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1256 530 216 85 134 chr6 88033820 88034044 -61482993 + MLT1A1 LTR MaLR 84 339 -69 1 1256 270 227 107 0 chr6 88034126 88034201 -61482836 - L1MC4a LINE L1 -600 7282 7200 1 1256 256 157 0 19 chr6 88035923 88035975 -61481062 + B3 SINE B2 163 213 -3 1 1256 360 234 0 25 chr6 88036422 88036501 -61480536 - PB1D10 SINE Alu -9 108 32 1 1256 395 282 67 22 chr6 88036458 88036592 -61480445 - ID_B1 SINE B4 -8 216 77 1 1256 315 58 0 0 chr6 88036612 88036664 -61480373 - B2_Mm1t SINE B2 -5 188 137 1 1256 231 100 125 0 chr6 88036699 88036739 -61480298 - B2_Mm1t SINE B2 -14 179 135 1 1256 457 237 142 17 chr6 88036805 88036925 -61480112 + ID_B1 SINE B4 86 220 -4 1 1256 230 241 19 0 chr6 88036943 88036997 -61480040 + tRNA-Ala-GCY_ tRNA tRNA 2 56 -19 1 1256 256 307 13 13 chr6 88037570 88037646 -61479391 + ID4_ SINE ID 2 77 -6 1 1256 476 235 59 82 chr6 88037690 88037923 -61479114 + B4A SINE B4 78 276 -16 1 1256 606 189 311 10 chr6 88037980 88038251 -61478786 - ORR1D1 LTR MaLR 0 374 10 1 1256 618 229 64 0 chr6 88038866 88039006 -61478031 - RSINE1 SINE B4 -14 151 3 1 1256 586 229 97 51 chr6 88039071 88039256 -61477781 - B3 SINE B2 -6 210 8 1 1256 420 20 0 0 chr6 88039269 88039318 -61477719 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 1 1256 1417 79 26 0 chr6 88039320 88039510 -61477527 - B2_Mm2 SINE B2 0 195 1 1 1256 785 215 28 0 chr6 88039802 88039946 -61477091 - B1_Mur1 SINE Alu 0 149 2 1 1256 714 180 21 35 chr6 88040586 88040730 -61476307 + B1_Mur1 SINE Alu 6 147 -2 1 1256 729 240 89 0 chr6 88040741 88040920 -61476117 + B3 SINE B2 17 211 -5 1 1256 448 219 33 58 chr6 88041072 88041193 -61475844 - RSINE1 SINE B4 -37 128 11 1 1256 2852 21 61 0 chr6 88041231 88041557 -61475480 - ORR1A0 LTR MaLR 0 346 1 1 1256 452 50 0 0 chr6 88041616 88041676 -61475361 - B1_Mus2 SINE Alu 0 147 88 1 1256 229 343 61 61 chr6 88041769 88041806 -61475231 + B4A SINE B4 55 91 -201 1 1256 279 306 110 9 chr6 88041806 88041915 -61475122 + PB1D9 SINE Alu 1 120 0 1 1256 371 304 180 7 chr6 88042430 88042569 -61474468 - RSINE1 SINE B4 0 165 3 1 1256 1266 27 7 0 chr6 88042773 88042919 -61474118 - B1_Mus2 SINE Alu 0 147 1 1 1256 477 142 31 46 chr6 88042945 88043053 -61473984 - B1_Mus1 SINE Alu 0 120 11 1 1256 715 164 57 16 chr6 88043054 88043178 -61473859 + B3 SINE B2 2 130 -86 1 1256 409 274 47 9 chr6 88043267 88043374 -61473663 - PB1D7 SINE Alu -1 119 9 1 1256 717 257 6 34 chr6 88043465 88043642 -61473395 + B3A SINE B2 20 191 -7 1 1256 435 292 47 0 chr6 88044170 88044276 -61472761 - B1F SINE Alu -21 128 18 1 1256 923 163 156 45 chr6 88044291 88044490 -61472547 - URR1B DNA MER1_type 0 225 5 1 1256 213 94 0 0 chr6 88044506 88044538 -61472499 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1256 682 217 32 37 chr6 88044621 88044808 -61472229 - B3A SINE B2 -11 187 2 1 1256 245 302 113 0 chr6 88044813 88044919 -61472118 - ID_B1 SINE B4 -2 222 105 1 1256 310 331 101 0 chr6 88045970 88046118 -61470919 - RSINE1 SINE B4 0 165 3 1 1256 219 36 0 0 chr6 88046232 88046260 -61470777 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1 1256 545 191 78 78 chr6 88046299 88046441 -61470596 + B1_Mur1 SINE Alu 2 143 -6 1 1256 611 230 32 0 chr6 88046490 88046616 -61470421 - B1_Mur3 SINE Alu -2 147 18 1 1256 1139 0 0 8 chr6 88047139 88047271 -61469766 + (TCTCCC)n Simple_repeat Simple_repeat 2 132 0 1 1256 22 35 0 0 chr6 88047271 88047300 -61469737 + AT_rich Low_complexity Low_complexity 1 29 0 1 1256 290 270 68 0 chr6 88047554 88047628 -61469409 - PB1D10 SINE Alu -21 96 18 1 1256 235 204 0 0 chr6 88047646 88047695 -61469342 + CT-rich Low_complexity Low_complexity 6 54 0 1 1256 937 122 14 28 chr6 88047709 88047853 -61469184 + B1_Mur3 SINE Alu 2 143 -6 1 1256 330 26 0 0 chr6 88047855 88047894 -61469143 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 1 1256 429 250 72 59 chr6 88047908 88048061 -61468976 - RSINE1 SINE B4 0 165 11 1 1256 258 228 35 0 chr6 88048211 88048268 -61468769 + ID4_ SINE ID 17 75 -8 1 1256 471 279 130 39 chr6 88048576 88048807 -61468230 - RMER15 LTR ERVL 0 575 324 1 1256 301 232 75 75 chr6 88049647 88049754 -61467283 + B1F SINE Alu 42 148 -1 1 1256 252 239 27 27 chr6 88049933 88050006 -61467031 + ID4_ SINE ID 1 73 -10 1 1256 217 303 169 0 chr6 88055120 88055209 -61461828 + PB1 SINE Alu 24 127 0 1 1256 277 263 8 81 chr6 88055654 88055778 -61461259 + PB1D10 SINE Alu 3 117 0 1 1256 392 310 121 10 chr6 88057562 88057695 -61459342 - MLT1A0 LTR MaLR -144 221 76 1 1256 201 74 0 0 chr6 88057695 88057722 -61459315 + (CACG)n Simple_repeat Simple_repeat 1 27 0 1 1256 392 310 121 10 chr6 88057722 88057787 -61459250 - MLT1A0 LTR MaLR -290 75 1 1 1256 363 272 97 0 chr6 88060432 88060535 -61456502 + RSINE1 SINE B4 1 113 -52 1 1256 216 0 0 0 chr6 88061692 88061716 -61455321 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1256 1261 34 0 0 chr6 88061716 88061862 -61455175 - B1_Mm SINE Alu 0 147 2 1 1256 660 239 14 0 chr6 88062106 88062244 -61454793 - ID_B1 SINE B4 -5 219 80 1 1256 356 206 30 211 chr6 88062290 88062340 -61454697 - B1_Mur1 SINE Alu -13 136 92 1 1256 703 187 97 0 chr6 88062340 88062474 -61454563 - B1_Mus1 SINE Alu -1 147 1 1 1256 356 206 30 211 chr6 88062474 88062589 -61454448 - B1_Mur1 SINE Alu -58 91 1 1 1256 263 296 82 0 chr6 88062714 88062812 -61454225 + MIRb SINE MIR 91 196 -72 1 1256 444 111 0 0 chr6 88064852 88064933 -61452104 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1256 387 174 0 0 chr6 88064934 88065020 -61452017 + (TG)n Simple_repeat Simple_repeat 1 86 0 1 1256 435 179 0 0 chr6 88065068 88065174 -61451863 + (TG)n Simple_repeat Simple_repeat 1 106 0 1 1256 576 276 0 22 chr6 88065263 88065400 -61451637 + ID_B1 SINE B4 83 216 -8 1 1256 225 329 57 44 chr6 88065282 88065356 -61451681 - YREP_Mm Unknown Unknown -1516 296 191 1 1256 237 204 61 0 chr6 88065356 88065405 -61451632 + PB1D9 SINE Alu 66 117 -3 1 1256 225 329 57 44 chr6 88065405 88065441 -61451596 - YREP_Mm Unknown Unknown -1516 190 136 1 1256 224 278 0 0 chr6 88065497 88065551 -61451486 + PB1D10 SINE Alu 64 117 0 1 1256 220 49 48 24 chr6 88067725 88067767 -61449270 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 1 1256 1090 96 14 0 chr6 88067767 88067913 -61449124 - B1_Mus1 SINE Alu 0 148 1 1 1256 224 98 0 56 chr6 88068264 88068318 -61448719 + T-rich Low_complexity Low_complexity 1 51 0 2 1256 1267 27 7 0 chr6 88068320 88068466 -61448571 - B1_Mm SINE Alu 0 147 1 2 1256 339 246 87 9 chr6 88068488 88068603 -61448434 - B3 SINE B2 -6 210 87 2 1256 409 296 24 106 chr6 88068600 88068770 -61448267 - ID_B1 SINE B4 -67 157 2 2 1256 495 244 17 25 chr6 88069136 88069278 -61447759 - B1F SINE Alu -4 145 5 2 1256 1121 160 44 15 chr6 88069375 88069578 -61447459 + B3 SINE B2 1 209 -7 2 1256 267 122 0 0 chr6 88069582 88069631 -61447406 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1256 347 264 146 0 chr6 88069653 88069763 -61447274 - B1F SINE Alu 0 149 24 2 1256 268 220 35 35 chr6 88070007 88070092 -61446945 + CT-rich Low_complexity Low_complexity 5 89 0 2 1256 306 350 21 7 chr6 88070894 88071038 -61445999 - MER102c DNA MER1_type -76 255 110 2 1256 758 263 0 0 chr6 88071522 88071674 -61445363 + RSINE1 SINE B4 2 153 -12 2 1256 312 48 0 0 chr6 88071687 88071729 -61445308 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 1256 246 128 0 0 chr6 88072476 88072515 -61444522 + (CCTA)n Simple_repeat Simple_repeat 4 42 0 2 1256 192 40 0 0 chr6 88072515 88072540 -61444497 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1256 270 303 155 40 chr6 88072840 88072988 -61444049 + Tigger5 DNA MER2_type 1 165 -2241 2 1256 3933 141 186 77 chr6 88075199 88076013 -61441024 - RMER19B LTR ERVK 0 902 1 2 1256 465 281 4 24 chr6 88076721 88076853 -61440184 - PB1D7 SINE Alu -20 127 1 2 1256 536 299 158 59 chr6 88077183 88077506 -61439531 + MTEa LTR MaLR 21 375 -4 2 1256 534 168 70 17 chr6 88077809 88077925 -61439112 - RMER19B LTR ERVK -454 157 22 2 1256 180 0 0 0 chr6 88077953 88077973 -61439064 + (TC)n Simple_repeat Simple_repeat 1 20 0 2 1256 418 246 35 10 chr6 88077985 88078174 -61438863 - B3 SINE B2 0 216 1 2 1256 267 314 0 0 chr6 88078224 88078294 -61438743 + ID4_ SINE ID 2 71 -12 2 1256 228 67 0 0 chr6 88078394 88078424 -61438613 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2 1256 779 138 98 0 chr6 88078425 88078548 -61438489 - B1_Mur4 SINE Alu -14 136 2 2 1256 210 224 0 39 chr6 88078789 88078840 -61438197 + A-rich Low_complexity Low_complexity 4 52 0 2 1256 237 281 0 15 chr6 88079162 88079227 -61437810 - MLT1A1 LTR MaLR -36 372 309 2 1256 424 303 0 0 chr6 88079450 88079549 -61437488 - B3A SINE B2 -75 123 25 2 1257 1212 186 24 5 chr6 88080620 88080831 -61436206 - B3 SINE B2 -1 215 1 2 1257 435 310 49 7 chr6 88080880 88081023 -61436014 - RSINE1 SINE B4 0 165 17 2 1257 234 62 0 0 chr6 88081089 88081121 -61435916 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1257 243 0 0 0 chr6 88081121 88081147 -61435890 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1257 422 220 0 7 chr6 88081148 88081290 -61435747 + (CA)n Simple_repeat Simple_repeat 2 142 0 2 1257 426 20 0 0 chr6 88081363 88081414 -61435623 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 1257 354 154 0 143 chr6 88081414 88081505 -61435532 - PB1D10 SINE Alu -19 98 21 2 1257 248 120 20 0 chr6 88081816 88081866 -61435171 + (TCC)n Simple_repeat Simple_repeat 3 53 0 2 1257 25 0 0 0 chr6 88081866 88081891 -61435146 + AT_rich Low_complexity Low_complexity 1 25 0 2 1257 1418 86 16 0 chr6 88082886 88083072 -61433965 + B2_Mm2 SINE B2 2 190 -5 2 1257 381 198 0 0 chr6 88083352 88083433 -61433604 + CT-rich Low_complexity Low_complexity 1 81 0 2 1257 451 223 164 6 chr6 88083452 88083587 -61433450 - B1F1 SINE Alu 0 149 1 2 1257 758 233 7 0 chr6 88084655 88084805 -61432232 - Lx5 LINE L1 -412 6638 6488 2 1257 1719 221 113 3 chr6 88084799 88085171 -61431866 + Lx5 LINE L1 6633 7045 -5 2 1257 525 189 17 43 chr6 88085242 88085358 -61431679 - ID_B1 SINE B4 -16 208 96 2 1257 310 188 23 12 chr6 88085361 88085447 -61431590 + (TATG)n Simple_repeat Simple_repeat 4 90 0 2 1257 689 226 31 12 chr6 88085450 88085611 -61431426 - RSINE1 SINE B4 0 165 2 2 1257 243 213 0 0 chr6 88086773 88086820 -61430217 + Charlie15a DNA MER1_type 153 199 -25 2 1257 199 267 31 45 chr6 88087008 88087101 -61429936 - MIRc SINE MIR -55 153 62 2 1257 23 0 0 0 chr6 88087284 88087307 -61429730 + AT_rich Low_complexity Low_complexity 1 23 0 2 1257 184 377 0 0 chr6 88088218 88088287 -61428750 - MIRb SINE MIR -16 252 184 2 1257 314 278 110 8 chr6 88088661 88088788 -61428249 + Tigger16a DNA Tigger 790 929 -4 2 1257 230 206 60 8 chr6 88088876 88088890 -61428147 + B4 SINE B4 72 113 -111 2 1257 296 157 0 0 chr6 88088890 88088941 -61428096 + B1_Mur4 SINE Alu 5 55 -95 2 1257 416 118 38 123 chr6 88088988 88089094 -61427943 + B1_Mus2 SINE Alu 42 138 -9 2 1257 387 0 0 0 chr6 88089115 88089158 -61427879 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1257 343 267 35 0 chr6 88089196 88089282 -61427755 - RSINE1 SINE B4 -73 92 4 2 1257 695 139 83 0 chr6 88089707 88089815 -61427222 - PB1D9 SINE Alu -1 119 3 2 1257 204 176 115 19 chr6 88089823 88089875 -61427162 + MIRb SINE MIR 24 80 -188 2 1257 241 322 120 23 chr6 88090190 88090365 -61426672 - MIRb SINE MIR -49 219 28 2 1257 283 91 0 52 chr6 88090677 88090735 -61426302 + (AGGGGG)n Simple_repeat Simple_repeat 3 57 0 2 1257 225 0 0 0 chr6 88091261 88091286 -61425751 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1257 369 0 0 0 chr6 88091391 88091432 -61425605 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1257 507 289 62 0 chr6 88091446 88091574 -61425463 - RSINE1 SINE B4 -16 149 14 2 1257 212 310 0 27 chr6 88091595 88091668 -61425369 - ID4_ SINE ID -5 78 8 2 1257 844 209 42 51 chr6 88091837 88092054 -61424983 - B3 SINE B2 0 216 2 2 1257 1089 58 0 40 chr6 88092463 88092716 -61424321 + (CCAA)n Simple_repeat Simple_repeat 1 242 0 2 1257 262 306 0 0 chr6 88092716 88092778 -61424259 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1257 899 85 333 38 chr6 88092986 88093213 -61423824 + ORR1A4 LTR MaLR 1 292 -37 2 1257 2357 97 18 24 chr6 88093213 88093542 -61423495 - ORR1A2 LTR MaLR 0 327 1 2 1257 899 84 13 60 chr6 88093542 88093578 -61423459 + ORR1A4 LTR MaLR 293 329 0 2 1257 230 268 28 0 chr6 88094163 88094234 -61422803 - L1MC3 LINE L1 -605 7180 7108 2 1257 1004 160 82 64 chr6 88094301 88094521 -61422516 - URR1B DNA MER1_type 0 225 2 2 1257 274 257 75 9 chr6 88094552 88094658 -61422379 + MIR SINE MIR 69 181 -81 2 1257 1419 68 0 45 chr6 88095317 88095475 -61421562 + B2_Mm1a SINE B2 2 159 -34 2 1257 423 0 0 0 chr6 88095475 88095522 -61421515 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 1257 1419 68 0 45 chr6 88095522 88095564 -61421473 + B2_Mm1a SINE B2 160 192 -1 2 1257 345 187 34 28 chr6 88096214 88096390 -61420647 + (CA)n Simple_repeat Simple_repeat 1 177 0 2 1257 429 54 0 0 chr6 88096601 88096657 -61420380 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1257 322 271 90 36 chr6 88098354 88098465 -61418572 - PB1D7 SINE Alu -3 117 1 2 1257 447 19 0 0 chr6 88099188 88099240 -61417797 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1257 1164 197 14 9 chr6 88101441 88101656 -61415381 - B3 SINE B2 0 216 1 2 1257 512 169 0 19 chr6 88101970 88102077 -61414960 - B1F SINE Alu -7 142 44 2 1257 207 204 0 0 chr6 88102963 88103007 -61414030 + A-rich Low_complexity Low_complexity 1 44 0 2 1257 485 87 0 0 chr6 88103310 88103379 -61413658 + B3 SINE B2 1 69 -147 2 1257 242 296 12 12 chr6 88103379 88103392 -61413645 + B4A SINE B4 1 82 -210 2 1257 983 116 13 20 chr6 88103460 88103610 -61413427 + B1_Mur3 SINE Alu 1 149 0 2 1257 229 51 51 0 chr6 88103610 88103649 -61413388 + (CAAAAA)n Simple_repeat Simple_repeat 6 46 0 2 1257 299 192 18 116 chr6 88103695 88103807 -61413230 - MLT1A1 LTR MaLR 0 408 308 2 1257 1062 172 70 15 chr6 88103838 88104039 -61412998 - B3 SINE B2 -4 212 1 2 1257 560 224 53 107 chr6 88104495 88104636 -61412401 - RCHARR1 DNA MER1_type -361 613 474 2 1257 1660 201 71 47 chr6 88104636 88104775 -61412262 + ORR1D1 LTR MaLR 1 156 -218 2 1257 291 28 0 0 chr6 88104775 88104811 -61412226 + (TCTCTG)n Simple_repeat Simple_repeat 2 37 0 2 1257 1660 201 71 47 chr6 88104811 88105036 -61412001 + ORR1D1 LTR MaLR 157 374 0 2 1257 590 279 132 0 chr6 88105046 88105236 -61411801 + ID_B1 SINE B4 2 216 -8 2 1257 560 224 53 107 chr6 88105236 88105308 -61411729 - RCHARR1 DNA MER1_type -510 464 401 2 1257 1327 218 109 14 chr6 88105257 88105623 -61411414 + MTD LTR MaLR 23 385 -34 2 1257 681 292 24 63 chr6 88105730 88105778 -61411259 + B3A SINE B2 2 42 -156 2 1257 2742 52 3 0 chr6 88105778 88106103 -61410934 + ORR1A2 LTR MaLR 1 326 -1 2 1257 681 289 0 160 chr6 88106103 88106265 -61410772 + B3A SINE B2 43 198 0 2 1257 849 193 7 0 chr6 88106265 88106405 -61410632 + B1_Mus1 SINE Alu 1 141 -7 2 1257 389 289 0 160 chr6 88106405 88106424 -61410613 + B2_Mm2 SINE B2 181 195 0 2 1257 261 257 83 0 chr6 88106467 88106576 -61410461 + L1MB7 LINE L1 5594 5711 -463 2 1257 432 0 0 0 chr6 88106696 88106744 -61410293 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1257 265 277 108 8 chr6 88106744 88106864 -61410173 + L1MB7 LINE L1 5928 6059 -125 2 1257 483 278 97 0 chr6 88106865 88107009 -61410028 + B3A SINE B2 2 159 -39 2 1257 369 0 0 0 chr6 88107015 88107056 -61409981 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1257 1367 75 0 56 chr6 88107191 88107389 -61409648 + B2_Mm2 SINE B2 2 188 -7 2 1257 1206 199 0 14 chr6 88107399 88107618 -61409419 - B3 SINE B2 0 216 1 2 1257 740 254 40 0 chr6 88107682 88107883 -61409154 + B4A SINE B4 2 210 -82 2 1257 507 60 0 0 chr6 88107886 88107953 -61409084 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 1257 204 40 0 0 chr6 88108022 88108047 -61408990 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1257 244 263 53 0 chr6 88108100 88108176 -61408861 - MLT1B LTR MaLR -17 373 294 3 1257 404 214 0 3 chr6 88108336 88108423 -61408614 + MLT1J LTR MaLR 60 179 -333 3 1257 200 59 29 0 chr6 88109310 88109344 -61407693 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 3 1257 281 340 28 9 chr6 88109687 88109794 -61407243 - RLTR24 LTR ERV1 -71 458 350 3 1257 205 170 0 41 chr6 88109819 88109868 -61407169 + T-rich Low_complexity Low_complexity 4 50 0 3 1257 374 86 8 18 chr6 88109888 88109953 -61407084 - B2_Mm2 SINE B2 -102 114 47 3 1257 863 84 113 0 chr6 88109985 88110127 -61406910 - B2_Mm1t SINE B2 -14 179 22 3 1257 926 158 7 0 chr6 88110139 88110285 -61406752 - B1_Mus1 SINE Alu 0 148 2 3 1257 390 208 88 10 chr6 88110675 88110777 -61406260 + B1_Mus2 SINE Alu 37 146 -1 3 1257 261 329 12 0 chr6 88111562 88111647 -61405390 + L1MB8 LINE L1 972 1057 -6277 3 1257 306 0 0 0 chr6 88111986 88112020 -61405017 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 1257 942 179 64 21 chr6 88112251 88112439 -61404598 + B3A SINE B2 3 198 0 3 1257 30 0 0 0 chr6 88112439 88112469 -61404568 + AT_rich Low_complexity Low_complexity 1 30 0 3 1257 391 259 132 47 chr6 88112770 88113110 -61403927 + L1MB8 LINE L1 2318 2686 -4648 3 1257 426 223 0 51 chr6 88113495 88113613 -61403424 + RMER15 LTR ERVL 336 447 -128 3 1257 234 161 0 111 chr6 88113726 88113789 -61403248 + RMER15 LTR ERVL 392 447 -128 3 1257 493 243 33 67 chr6 88113865 88114015 -61403022 + RMER15 LTR ERVL 417 561 -14 3 1257 546 43 0 0 chr6 88114387 88114456 -61402581 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1257 438 262 35 78 chr6 88114642 88114834 -61402203 + B3A SINE B2 30 215 -1 3 1257 279 287 46 0 chr6 88114913 88115021 -61402016 + L1MB8 LINE L1 6645 6757 -281 3 1257 4448 150 99 7 chr6 88116956 88117782 -61399255 - RMER19B LTR ERVK 0 902 1 3 1257 1077 179 60 3 chr6 88118611 88118943 -61398094 + MTD LTR MaLR 6 415 -4 3 1257 385 184 40 0 chr6 88118947 88119014 -61398023 + PB1D9 SINE Alu 41 110 -10 3 1257 974 122 0 6 chr6 88119014 88119195 -61397842 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1257 181 270 94 57 chr6 88119714 88119820 -61397217 - MIRc SINE MIR -49 219 110 3 1257 860 135 183 5 chr6 88120157 88120343 -61396694 + URR1B DNA MER1_type 7 225 0 3 1257 1119 66 0 0 chr6 88120441 88120593 -61396444 + B2_Mm2 SINE B2 1 152 -43 3 1257 263 96 0 19 chr6 88120593 88120646 -61396391 + (CATA)n Simple_repeat Simple_repeat 1 52 0 3 1257 269 250 0 56 chr6 88120648 88120720 -61396317 - B4 SINE B4 -206 86 19 3 1257 2509 143 37 5 chr6 88121164 88121572 -61395465 - MTC LTR MaLR 0 421 1 3 1257 393 317 50 6 chr6 88121577 88121758 -61395279 - HAL1 LINE L1 -750 1757 1569 3 1257 259 309 159 25 chr6 88121971 88122210 -61394827 + L3 LINE CR1 4214 4484 -5 3 1257 467 284 63 48 chr6 88122971 88123178 -61393859 + ORR1E LTR MaLR 1 210 -149 3 1257 201 199 21 45 chr6 88123464 88123532 -61393505 - MIRc SINE MIR -82 186 115 3 1257 842 234 23 1 chr6 88123673 88123886 -61393151 - L1ME1 LINE L1 -184 5980 5755 3 1257 195 129 0 0 chr6 88123886 88123917 -61393120 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1257 288 0 0 0 chr6 88123917 88123949 -61393088 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1257 728 245 68 24 chr6 88123949 88123985 -61393052 - L1ME1 LINE L1 -410 5754 5720 3 1257 180 77 0 0 chr6 88124053 88124079 -61392958 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1257 1147 62 0 0 chr6 88124079 88124225 -61392812 - B1_Mus2 SINE Alu 0 147 2 3 1257 935 267 16 84 chr6 88124227 88124538 -61392499 - ORR1E LTR MaLR -64 295 6 3 1257 442 318 103 32 chr6 88124546 88124593 -61392444 - L1ME1 LINE L1 -454 5708 5657 3 1257 3751 114 29 82 chr6 88124593 88125322 -61391715 + RMER6C LTR ERVK 1 690 0 3 1257 513 326 84 15 chr6 88125322 88125655 -61391382 - L1ME1 LINE L1 -523 5656 5301 3 1257 501 286 192 8 chr6 88125745 88125985 -61391052 + L1M5 LINE L1 3608 3891 -2255 3 1257 609 315 11 0 chr6 88125993 88126177 -61390860 + B3 SINE B2 1 186 -30 3 1257 279 224 0 0 chr6 88126177 88126226 -61390811 + RMER15 LTR ERVL 1 49 -526 3 1257 2236 173 19 9 chr6 88126250 88126671 -61390366 + RMER15 LTR ERVL 151 575 0 3 1257 505 286 60 0 chr6 88126818 88126951 -61390086 + RSINE1 SINE B4 3 143 -22 3 1257 324 0 0 0 chr6 88126956 88126992 -61390045 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1257 676 320 75 46 chr6 88127080 88127270 -61389767 + L1M5 LINE L1 4194 4394 -1752 3 1257 958 176 142 11 chr6 88127270 88127460 -61389577 - B3 SINE B2 0 216 2 3 1257 676 312 71 43 chr6 88127460 88127667 -61389370 + L1M5 LINE L1 4395 4604 -1542 3 1257 1045 186 65 0 chr6 88127809 88128008 -61389029 + B3 SINE B2 2 213 -3 3 1257 361 333 107 75 chr6 88128116 88128459 -61388578 + L1MD LINE L1 4590 4950 -1196 3 1257 658 217 19 26 chr6 88128459 88128615 -61388422 + RSINE1 SINE B4 4 158 -7 3 1257 361 333 107 75 chr6 88128615 88128774 -61388263 + L1MD LINE L1 4951 5108 -1038 3 1257 695 210 48 18 chr6 88128774 88128939 -61388098 + B3A SINE B2 3 172 -26 3 1257 450 0 0 0 chr6 88128942 88128992 -61388045 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1257 764 149 40 47 chr6 88128996 88129144 -61387893 + B1_Mur1 SINE Alu 3 149 0 3 1257 406 318 0 0 chr6 88129172 88129279 -61387758 + B3A SINE B2 17 123 -75 3 1257 431 63 16 0 chr6 88129290 88129353 -61387684 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1257 667 257 7 0 chr6 88129358 88129506 -61387531 + B1_Mur1 SINE Alu 1 149 0 3 1257 544 116 21 0 chr6 88129515 88129610 -61387427 + (GAGAA)n Simple_repeat Simple_repeat 4 100 0 3 1257 1176 54 0 0 chr6 88129618 88129765 -61387272 + B1_Mm SINE Alu 1 147 0 3 1257 312 284 154 14 chr6 88129771 88129914 -61387123 + L1MCa LINE L1 1872 2034 -4474 3 1257 460 165 118 0 chr6 88129948 88130033 -61387004 - B3 SINE B2 -121 95 1 3 1257 21 0 0 0 chr6 88130138 88130159 -61386878 + AT_rich Low_complexity Low_complexity 1 21 0 3 1257 839 169 7 20 chr6 88130162 88130313 -61386724 - B1_Mur1 SINE Alu 0 149 1 3 1257 319 262 85 31 chr6 88130321 88130451 -61386586 - L1MC1 LINE L1 0 6333 6197 3 1257 631 217 8 23 chr6 88130516 88130648 -61386389 + B3 SINE B2 1 130 -86 3 1257 365 19 58 0 chr6 88130676 88130728 -61386309 + (TAAAA)n Simple_repeat Simple_repeat 5 59 0 3 1257 22 0 0 0 chr6 88130755 88130777 -61386260 + AT_rich Low_complexity Low_complexity 1 22 0 3 1257 243 319 0 41 chr6 88131072 88131135 -61385902 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 3 1257 351 0 0 0 chr6 88131135 88131174 -61385863 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1257 1120 44 0 0 chr6 88131174 88131311 -61385726 - B1_Mus1 SINE Alu -10 138 2 3 1257 243 319 0 41 chr6 88131311 88131344 -61385693 + (TATATG)n Simple_repeat Simple_repeat 6 37 0 3 1257 518 253 59 84 chr6 88131361 88131452 -61385585 + ID SINE ID 2 87 -137 3 1257 332 280 72 0 chr6 88131452 88131577 -61385460 + B1F SINE Alu 1 134 -15 3 1257 240 280 82 33 chr6 88131758 88131880 -61385157 - L1MC1 LINE L1 -817 5329 5202 3 1257 300 53 0 0 chr6 88132004 88132042 -61384995 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 3 1257 713 223 22 0 chr6 88132067 88132206 -61384831 - B1_Mur1 SINE Alu -7 142 1 3 1257 495 316 34 53 chr6 88132337 88132388 -61384649 - B4A SINE B4 -1 291 250 3 1257 2225 137 71 5 chr6 88132388 88132783 -61384254 - MTC LTR MaLR 0 421 1 3 1257 495 316 34 53 chr6 88132783 88132938 -61384099 - B4A SINE B4 -43 249 89 3 1257 1003 128 84 35 chr6 88132942 88133145 -61383892 - B3 SINE B2 -3 213 1 3 1257 297 51 0 0 chr6 88133160 88133199 -61383838 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1257 929 200 82 0 chr6 88133350 88133545 -61383492 - B3 SINE B2 -5 211 1 3 1257 341 229 9 0 chr6 88133586 88133691 -61383346 + (TATG)n Simple_repeat Simple_repeat 2 107 0 3 1257 367 207 41 98 chr6 88133740 88133863 -61383174 - PB1D9 SINE Alu 0 120 5 3 1257 342 288 12 0 chr6 88133985 88134065 -61382972 + ID_B1 SINE B4 10 90 -134 3 1257 183 42 0 0 chr6 88134177 88134201 -61382836 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1257 357 92 26 13 chr6 88135015 88135092 -61381945 + (TTTTG)n Simple_repeat Simple_repeat 1 78 0 3 1257 1175 47 0 20 chr6 88135092 88135243 -61381794 - B1_Mus1 SINE Alu 0 148 1 3 1257 748 208 0 32 chr6 88135248 88135402 -61381635 - B1F2 SINE Alu 0 149 1 3 1257 53 0 0 0 chr6 88135477 88135530 -61381507 + AT_rich Low_complexity Low_complexity 1 53 0 3 1257 491 242 17 85 chr6 88135825 88136001 -61381036 - RSINE1 SINE B4 0 165 2 3 1257 263 337 84 80 chr6 88136221 88136373 -61380664 - MLT1K LTR MaLR -2 593 450 3 1257 899 154 0 0 chr6 88136373 88136509 -61380528 + B1_Mur3 SINE Alu 1 136 -13 3 1257 311 0 26 0 chr6 88136509 88136548 -61380489 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 1257 263 337 84 80 chr6 88136548 88136668 -61380369 - MLT1K LTR MaLR -146 449 320 3 1257 219 88 0 0 chr6 88137489 88137523 -61379514 + (TCC)n Simple_repeat Simple_repeat 2 35 0 3 1257 380 214 0 35 chr6 88137524 88137611 -61379426 - B1_Mus2 SINE Alu -22 125 42 3 1257 320 146 0 0 chr6 88137615 88137663 -61379374 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 3 1257 342 78 0 38 chr6 88137672 88137725 -61379312 - B1_Mus1 SINE Alu -93 55 5 3 1257 248 268 69 35 chr6 88138191 88138307 -61378730 - Charlie8 DNA MER1_type -2225 203 84 3 1257 189 289 0 0 chr6 88139488 88139533 -61377504 - L2b LINE L2 -1 3374 3330 3 1257 23 0 0 0 chr6 88139841 88139864 -61377173 + GC_rich Low_complexity Low_complexity 1 23 0 3 1257 29 0 0 0 chr6 88141399 88141428 -61375609 + AT_rich Low_complexity Low_complexity 1 29 0 3 1257 378 0 0 0 chr6 88141657 88141699 -61375338 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 3 1257 333 170 26 123 chr6 88142222 88142238 -61374799 + MT2B LTR ERVL 149 153 -448 3 1257 602 216 0 0 chr6 88142238 88142354 -61374683 + PB1D9 SINE Alu 1 116 -4 3 1257 189 0 0 0 chr6 88142469 88142490 -61374547 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1257 423 0 0 0 chr6 88142490 88142536 -61374501 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1257 342 0 0 0 chr6 88143292 88143330 -61373707 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1257 207 0 0 0 chr6 88145778 88145801 -61371236 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1257 23 54 0 0 chr6 88147457 88147494 -61369543 + GC_rich Low_complexity Low_complexity 1 37 0 4 1257 316 333 29 14 chr6 88153951 88154091 -61362946 + MER3 DNA MER1_type 67 208 -1 4 1257 225 159 0 0 chr6 88155828 88155872 -61361165 + T-rich Low_complexity Low_complexity 1 44 0 4 1257 360 43 0 0 chr6 88157626 88157672 -61359365 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1257 1062 183 42 9 chr6 88158983 88159198 -61357839 + URR1A DNA MER1_type 5 226 0 4 1257 948 59 88 7 chr6 88160547 88160683 -61356354 + B1_Mus2 SINE Alu 1 147 0 4 1257 204 158 0 0 chr6 88160709 88160747 -61356290 + (TAA)n Simple_repeat Simple_repeat 2 39 0 4 1257 192 179 0 0 chr6 88162435 88162474 -61354563 + (TAA)n Simple_repeat Simple_repeat 2 40 0 4 1257 414 0 0 0 chr6 88162474 88162520 -61354517 + (CTA)n Simple_repeat Simple_repeat 2 47 0 4 1257 314 259 227 57 chr6 88162541 88162717 -61354320 + B3 SINE B2 4 209 -7 4 1257 254 327 141 5 chr6 88162761 88162967 -61354070 + L1M3 LINE L1 5661 5894 -289 4 1257 234 143 0 23 chr6 88163124 88163167 -61353870 - ID_B1 SINE B4 -9 215 174 4 1257 224 226 48 16 chr6 88163167 88163187 -61353850 - PB1D10 SINE Alu -9 108 44 4 1257 453 247 27 43 chr6 88163481 88163623 -61353414 + ID_B1 SINE B4 70 204 -88 4 1257 738 149 16 0 chr6 88163517 88163638 -61353399 + B1_Mur1 SINE Alu 24 146 -3 4 1257 377 294 76 2 chr6 88164060 88164179 -61352858 - PB1 SINE Alu -2 125 1 4 1257 248 227 42 74 chr6 88164238 88164333 -61352704 + ID_B1 SINE B4 127 218 -6 4 1257 239 329 0 0 chr6 88164432 88164502 -61352535 + ID4_ SINE ID 2 71 -12 4 1257 2963 150 49 11 chr6 88164502 88165018 -61352019 + RMER15 LTR ERVL 4 532 -43 4 1257 423 0 0 0 chr6 88165018 88165065 -61351972 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1257 2963 150 49 11 chr6 88165065 88165099 -61351938 + RMER15 LTR ERVL 533 574 -1 4 1257 245 242 0 15 chr6 88166723 88166790 -61350247 + G-rich Low_complexity Low_complexity 2 67 0 4 1257 489 283 134 21 chr6 88166868 88167185 -61349852 - MER44B DNA MER2_type -2 548 190 4 1257 559 300 42 6 chr6 88167167 88167357 -61349680 - MER44B DNA MER2_type -441 264 67 4 1257 222 83 0 0 chr6 88167556 88167592 -61349445 + B2_Mm2 SINE B2 2 37 -158 4 1257 1369 140 14 5 chr6 88167594 88167802 -61349235 + B3 SINE B2 2 211 -5 4 1257 1532 63 0 0 chr6 88167884 88168073 -61348964 + B2_Mm1a SINE B2 3 191 -2 4 1257 211 170 35 86 chr6 88168793 88168851 -61348186 - MIRb SINE MIR -87 181 127 4 1257 269 296 57 57 chr6 88168853 88168975 -61348062 - B2_Mm2 SINE B2 -66 129 8 4 1257 207 239 0 0 chr6 88170502 88170569 -61346468 + (CCA)n Simple_repeat Simple_repeat 2 68 0 4 1257 213 194 0 0 chr6 88171066 88171102 -61345935 + (CGAG)n Simple_repeat Simple_repeat 2 37 0 4 1257 185 345 12 23 chr6 88171727 88171813 -61345224 + MIRb SINE MIR 45 129 -139 4 1257 180 250 0 22 chr6 88171810 88171855 -61345182 - L2c LINE L2 -2 3373 3330 4 1257 254 265 11 4 chr6 88173931 88174021 -61343016 - L2c LINE L2 -341 3078 2987 4 1257 226 288 50 8 chr6 88175906 88176025 -61341012 + L2b LINE L2 2933 3056 -319 4 1257 272 304 21 32 chr6 88176351 88176446 -61340591 - MIRb SINE MIR -83 185 92 4 1257 441 280 69 18 chr6 88177449 88177667 -61339370 - L1MB3 LINE L1 0 6183 5955 4 1257 22 35 0 0 chr6 88178057 88178086 -61338951 + AT_rich Low_complexity Low_complexity 1 29 0 4 1257 459 198 1 43 chr6 88178104 88178208 -61338829 - PB1 SINE Alu -7 120 19 4 1257 305 319 80 15 chr6 88178439 88178576 -61338461 - MLT1D LTR MaLR -295 210 65 4 1257 25 51 0 0 chr6 88179996 88180035 -61337002 + AT_rich Low_complexity Low_complexity 1 39 0 4 1257 242 298 157 67 chr6 88182063 88182286 -61334751 + MER74B LTR ERVL 85 327 -295 4 1257 408 20 0 0 chr6 88182789 88182838 -61334199 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1257 289 287 10 41 chr6 88184600 88184698 -61332339 - MIR SINE MIR -110 152 58 4 1257 372 302 68 80 chr6 88184786 88184962 -61332075 - B3A SINE B2 -5 188 15 4 1257 186 43 0 0 chr6 88184976 88184999 -61332038 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1257 798 157 7 22 chr6 88185000 88185137 -61331900 - B1_Mur3 SINE Alu -9 140 6 4 1257 478 271 13 59 chr6 88185137 88185153 -61331884 - ID_B1 SINE B4 -9 215 70 4 1257 1426 127 4 60 chr6 88186830 88187064 -61329973 + URR1B DNA MER1_type 5 225 0 4 1257 183 341 98 0 chr6 88187288 88187420 -61329617 + L2a LINE L2 3096 3240 -186 4 1257 435 165 164 10 chr6 88187684 88187788 -61329249 + ID_B1 SINE B4 103 222 -2 4 1257 552 222 99 53 chr6 88187845 88188016 -61329021 + B3A SINE B2 2 180 -18 4 1257 345 100 0 0 chr6 88188029 88188079 -61328958 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1257 245 343 65 19 chr6 88188117 88188224 -61328813 + MER102c DNA MER1_type 76 187 -144 4 1257 189 0 0 0 chr6 88188273 88188294 -61328743 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 4 1257 321 135 0 0 chr6 88189078 88189130 -61327907 + (TCC)n Simple_repeat Simple_repeat 1 52 0 4 1257 901 117 0 40 chr6 88189148 88189299 -61327738 - B1_Mur4 SINE Alu 0 150 6 4 1257 415 0 0 35 chr6 88190939 88190996 -61326041 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1257 384 22 0 0 chr6 88192461 88192506 -61324531 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1257 320 103 0 17 chr6 88193831 88193890 -61323147 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1257 477 0 0 0 chr6 88193892 88193945 -61323092 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1257 734 273 20 35 chr6 88193945 88194146 -61322891 - B4A SINE B4 -89 203 6 4 1257 490 294 45 25 chr6 88194155 88194357 -61322680 - L1M4 LINE L1 -358 5816 5611 4 1257 452 256 25 25 chr6 88194357 88194477 -61322560 - PB1D7 SINE Alu 0 120 1 4 1257 567 250 72 22 chr6 88194603 88194742 -61322295 + RSINE1 SINE B4 1 146 -19 4 1257 396 0 0 0 chr6 88194754 88194798 -61322239 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1257 600 141 7 13 chr6 88197198 88197349 -61319688 + CT-rich Low_complexity Low_complexity 1 150 0 4 1257 1458 73 5 5 chr6 88197796 88197988 -61319049 + B2_Mm1a SINE B2 2 193 0 4 1257 1202 158 38 47 chr6 88200402 88200615 -61316422 + B3 SINE B2 1 211 -5 4 1257 785 11 11 0 chr6 88200639 88200733 -61316304 + (GA)n Simple_repeat Simple_repeat 1 95 0 4 1257 224 269 64 46 chr6 88201550 88201659 -61315378 + MIRb SINE MIR 22 132 -136 4 1257 223 320 24 8 chr6 88203346 88203472 -61313565 + (ATGGTG)n Simple_repeat Simple_repeat 6 133 0 4 1257 180 0 0 0 chr6 88209238 88209258 -61307779 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1257 748 186 20 7 chr6 88209258 88209404 -61307633 - B1F2 SINE Alu 0 149 2 4 1257 221 310 76 42 chr6 88211285 88211403 -61305634 - MIR SINE MIR -62 146 25 4 1258 803 231 68 129 chr6 88211547 88211841 -61305196 + B4A SINE B4 1 276 -16 4 1258 211 261 45 30 chr6 88215503 88215570 -61301467 - MIRm SINE MIR -126 150 83 4 1258 2882 199 57 67 chr6 88216438 88217266 -61299771 - RMER19B LTR ERVK -12 890 1 4 1258 522 0 0 0 chr6 88219177 88219235 -61297802 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1258 353 345 105 19 chr6 88221458 88221668 -61295369 + MIR SINE MIR 9 236 -26 4 1258 210 118 0 0 chr6 88223905 88223939 -61293098 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1258 350 244 146 0 chr6 88223975 88224057 -61292980 - PB1D9 SINE Alu -16 104 11 4 1258 457 229 113 46 chr6 88227041 88227192 -61289845 + B4 SINE B4 3 163 -129 4 1258 901 114 43 0 chr6 88228413 88228553 -61288484 - B1_Mur4 SINE Alu 0 150 5 4 1258 237 276 25 50 chr6 88228946 88229026 -61288011 + MIR SINE MIR 185 262 0 4 1258 576 0 0 0 chr6 88229797 88229861 -61287176 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1258 437 232 168 52 chr6 88229871 88230011 -61287026 + MLT1B LTR MaLR 165 309 -81 4 1258 402 299 7 53 chr6 88233991 88234143 -61282894 + B1F1 SINE Alu 5 149 0 4 1258 348 127 0 0 chr6 88234512 88234567 -61282470 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1258 541 226 0 0 chr6 88235296 88235389 -61281648 - RLTR20D LTR ERVK 0 568 476 4 1258 432 0 0 0 chr6 88235392 88235440 -61281597 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1258 230 143 0 0 chr6 88235444 88235479 -61281558 - RLTR20D LTR ERVK -125 416 382 4 1258 330 262 0 12 chr6 88235471 88235556 -61281481 - RLTR20D LTR ERVK -290 278 195 4 1258 21 36 0 0 chr6 88235850 88235878 -61281159 + AT_rich Low_complexity Low_complexity 1 28 0 4 1258 4557 148 34 14 chr6 88235878 88236653 -61280384 - Lx2 LINE L1 0 6997 6208 4 1258 4574 181 54 24 chr6 88236660 88237762 -61279275 - Lx2 LINE L1 -1052 5945 4829 4 1258 255 191 16 16 chr6 88237748 88237812 -61279225 - Lx2 LINE L1 -1342 4544 4481 4 1258 961 153 21 2 chr6 88237782 88237977 -61279060 + L1_Mur2 LINE L1 3621 3824 -2322 4 1258 1063 57 13 25 chr6 88237977 88238150 -61278887 - MT2C_Mm LTR ERVL -327 166 1 4 1258 593 110 0 0 chr6 88238155 88238246 -61278791 + L1_Mur2 LINE L1 4538 4628 -1258 4 1258 392 345 63 17 chr6 88238252 88238426 -61278611 - MLT1A0 LTR MaLR -173 192 11 4 1258 723 111 50 17 chr6 88238650 88238769 -61278268 - RLTR10A LTR ERVK 0 411 289 4 1258 2400 113 108 21 chr6 88238769 88239156 -61277881 - Lx4A LINE L1 -1 7057 6637 4 1258 632 138 123 54 chr6 88239158 88239288 -61277749 - B1_Mus2 SINE Alu 0 147 9 4 1258 221 293 80 0 chr6 88240768 88240843 -61276194 + MIRc SINE MIR 56 136 -132 5 1258 205 327 96 17 chr6 88241275 88241390 -61275647 + MIR SINE MIR 15 138 -124 5 1258 308 296 92 76 chr6 88243639 88243888 -61273149 - L1MEe LINE L1 -3896 958 706 5 1258 560 326 53 18 chr6 88244150 88244375 -61272662 + Cheshire DNA MER1_type 1 233 -2187 5 1258 235 208 57 0 chr6 88244528 88244581 -61272456 - L1MC3 LINE L1 -591 7194 7139 5 1258 242 250 0 124 chr6 88244590 88244695 -61272342 - RLTR25A LTR ERVK -490 613 522 5 1258 678 139 0 10 chr6 88244613 88244715 -61272322 - B1_Mur1 SINE Alu -22 127 27 5 1258 1155 283 131 19 chr6 88244713 88245142 -61271895 + Cheshire DNA MER1_type 392 868 -1552 5 1258 375 327 151 29 chr6 88245828 88246086 -61270951 + MLT2B3 LTR ERVL 338 641 -76 5 1258 189 0 0 0 chr6 88246086 88246107 -61270930 + (TCTCTG)n Simple_repeat Simple_repeat 4 24 0 5 1258 328 340 167 21 chr6 88246107 88246179 -61270858 + MLT2B3 LTR ERVL 642 717 0 5 1258 503 266 18 0 chr6 88252029 88252142 -61264895 - PB1D10 SINE Alu -1 116 2 5 1258 267 297 253 0 chr6 88252257 88252348 -61264689 - PB1D10 SINE Alu -3 114 1 5 1258 201 74 0 0 chr6 88252533 88252560 -61264477 + (CACCC)n Simple_repeat Simple_repeat 4 30 0 5 1258 317 250 118 82 chr6 88252961 88253139 -61263898 - MIR SINE MIR -32 236 49 5 1258 847 237 12 115 chr6 88253541 88253784 -61263253 - ID_B1 SINE B4 0 224 7 5 1258 1970 169 185 79 chr6 88253784 88254266 -61262771 + MT2A LTR ERVL 1 533 0 5 1258 184 353 26 115 chr6 88254353 88254545 -61262492 - MIRb SINE MIR -69 199 25 5 1258 573 15 0 0 chr6 88255013 88255079 -61261958 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1258 742 242 205 5 chr6 88255550 88255774 -61261263 - B4A SINE B4 -18 274 6 5 1258 590 99 11 0 chr6 88258441 88258532 -61258505 + (TG)n Simple_repeat Simple_repeat 2 93 0 5 1258 362 269 17 25 chr6 88259405 88259523 -61257514 + PB1D10 SINE Alu 1 117 0 5 1258 396 0 0 0 chr6 88259857 88259901 -61257136 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1258 265 271 68 48 chr6 88260565 88260712 -61256325 - MIRb SINE MIR -79 189 40 5 1258 279 0 0 0 chr6 88261048 88261079 -61255958 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1258 1012 238 40 0 chr6 88261080 88261282 -61255755 + B3 SINE B2 7 216 0 5 1258 21 0 0 0 chr6 88261282 88261303 -61255734 + AT_rich Low_complexity Low_complexity 1 21 0 5 1258 522 224 221 40 chr6 88262579 88262728 -61254309 - B3 SINE B2 -6 210 35 5 1258 259 286 16 38 chr6 88263323 88263462 -61253575 + B3 SINE B2 20 154 -41 5 1258 1628 38 0 0 chr6 88264545 88264731 -61252306 + B2_Mm1t SINE B2 1 186 -7 5 1258 896 148 0 34 chr6 88264898 88265045 -61251992 + B1_Mm SINE Alu 1 142 -5 5 1258 207 100 0 0 chr6 88265246 88265276 -61251761 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1258 222 236 83 54 chr6 88265556 88265682 -61251355 + MIRc SINE MIR 49 173 -95 5 1258 601 142 9 9 chr6 88266129 88266243 -61250794 + GA-rich Low_complexity Low_complexity 2 115 0 5 1258 808 264 11 0 chr6 88266954 88267128 -61249909 + B3A SINE B2 1 176 -22 5 1258 181 323 0 16 chr6 88267660 88267723 -61249314 - MIRb SINE MIR -178 90 29 5 1258 192 40 0 0 chr6 88268351 88268376 -61248661 + (CAGGC)n Simple_repeat Simple_repeat 1 25 0 5 1258 226 274 63 77 chr6 88270587 88270727 -61246310 + MIRc SINE MIR 54 178 -30 5 1258 307 314 78 64 chr6 88272336 88272540 -61244497 + MIRb SINE MIR 25 231 -37 5 1258 598 237 50 14 chr6 88272963 88273104 -61243933 + B1_Mur2 SINE Alu 2 147 -2 5 1258 447 154 273 33 chr6 88273108 88273229 -61243808 + B1_Mur4 SINE Alu 1 150 0 5 1258 329 0 0 24 chr6 88273875 88273917 -61243120 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1258 681 253 39 13 chr6 88274640 88274781 -61242256 + RSINE1 SINE B4 2 147 -18 5 1258 324 0 0 0 chr6 88274781 88274817 -61242220 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1258 681 253 39 13 chr6 88274817 88274831 -61242206 + RSINE1 SINE B4 148 161 -4 5 1258 709 243 35 29 chr6 88275417 88275591 -61241446 - B3A SINE B2 -16 182 8 5 1258 475 274 26 0 chr6 88275620 88275737 -61241300 - PB1D7 SINE Alu 0 120 1 5 1258 380 259 0 0 chr6 88275794 88275879 -61241158 + Lx6 LINE L1 6794 6878 -582 5 1258 245 213 21 0 chr6 88275884 88275931 -61241106 - B1F1 SINE Alu -100 49 2 5 1258 742 189 25 0 chr6 88275931 88276013 -61241024 - B4 SINE B4 -206 86 2 5 1258 1409 187 209 8 chr6 88276128 88276462 -61240575 + MTC LTR MaLR 13 421 0 5 1258 231 36 0 0 chr6 88277040 88277068 -61239969 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1258 1447 206 110 0 chr6 88277122 88277432 -61239605 - ORR1D1 LTR MaLR 0 374 31 5 1258 1399 139 9 9 chr6 88277531 88277748 -61239289 + ORR1B2 LTR MaLR 147 363 -4 5 1258 593 281 102 35 chr6 88280341 88280801 -61236236 + L1M5 LINE L1 2787 3277 -2869 5 1258 421 299 166 34 chr6 88281192 88281239 -61235798 + L1M5 LINE L1 4272 4318 -1828 5 1258 1233 94 22 27 chr6 88281239 88281424 -61235613 + B2_Mm1t SINE B2 1 184 -9 5 1258 524 299 166 34 chr6 88281424 88281882 -61235155 + L1M5 LINE L1 4318 4844 -1302 5 1258 666 254 0 0 chr6 88281921 88282051 -61234986 - RSINE1 SINE B4 -33 132 3 5 1258 389 20 20 0 chr6 88282232 88282282 -61234755 + (TAA)n Simple_repeat Simple_repeat 1 51 0 5 1258 259 257 72 18 chr6 88282283 88282431 -61234606 + L1M5 LINE L1 5134 5301 -845 5 1258 1827 222 46 13 chr6 88283462 88283854 -61233183 - MTD LTR MaLR -14 405 1 5 1258 223 344 62 0 chr6 88284088 88284152 -61232885 + ID4_ SINE ID 8 75 -8 5 1258 1063 251 148 7 chr6 88284776 88285201 -61231836 + L1MC3 LINE L1 6606 7090 -695 5 1258 327 150 0 0 chr6 88285217 88285277 -61231760 + (T)n Simple_repeat Simple_repeat 1 60 0 5 1258 1195 56 7 0 chr6 88285277 88285421 -61231616 - B1_Mus2 SINE Alu 0 147 3 5 1258 230 216 39 0 chr6 88286806 88286857 -61230180 + CT-rich Low_complexity Low_complexity 2 54 0 5 1258 769 219 48 24 chr6 88287351 88287557 -61229480 + B3 SINE B2 2 212 -4 5 1258 309 389 54 9 chr6 88288013 88288236 -61228801 + L1ME3B LINE L1 5760 5992 -248 5 1258 365 269 10 41 chr6 88293382 88293479 -61223558 + MER20 DNA MER1_type 49 142 -77 5 1258 180 0 0 0 chr6 88293575 88293595 -61223442 + (CCTG)n Simple_repeat Simple_repeat 4 23 0 5 1258 200 288 87 73 chr6 88294321 88294527 -61222510 + L2 LINE L2 2536 2744 -675 5 1258 184 88 118 0 chr6 88295519 88295553 -61221484 + L2b LINE L2 3333 3370 -5 5 1258 941 102 88 0 chr6 88295737 88295884 -61221153 - URR1B DNA MER1_type 0 225 66 5 1258 198 0 0 0 chr6 88295902 88295924 -61221113 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1258 1327 244 158 6 chr6 88297669 88298023 -61219014 + MTD LTR MaLR 12 419 0 5 1258 1051 200 35 96 chr6 88298690 88299033 -61218004 + RLTRETN_Mm LTR ERVK 1 322 0 5 1258 1215 94 37 48 chr6 88300557 88300746 -61216291 + B2_Mm2 SINE B2 1 187 -8 5 1258 518 198 149 0 chr6 88301635 88301756 -61215281 + B1_Mur1 SINE Alu 1 139 -10 5 1258 212 150 33 0 chr6 88303036 88303096 -61213941 + (TCTCTG)n Simple_repeat Simple_repeat 3 64 0 5 1258 778 337 73 12 chr6 88303096 88303580 -61213457 - MLT1-int LTR MaLR -483 888 361 5 1258 210 356 17 0 chr6 88304676 88304735 -61212302 - PB1 SINE Alu -67 60 1 5 1258 260 280 0 0 chr6 88305007 88305057 -61211980 + PB1D10 SINE Alu 27 76 -41 5 1258 305 250 27 27 chr6 88306904 88306978 -61210059 + B1F SINE Alu 71 144 -5 5 1258 212 281 0 59 chr6 88307283 88307351 -61209686 + MIR3 SINE MIR 91 154 -54 5 1258 1586 156 139 12 chr6 88309164 88309496 -61207541 - ORR1D1 LTR MaLR 0 374 1 5 1258 1116 74 0 0 chr6 88309606 88309741 -61207296 + B1_Mus2 SINE Alu 1 135 -12 5 1258 189 358 110 15 chr6 88309841 88309977 -61207060 - MIRb SINE MIR -119 149 1 5 1258 427 307 127 30 chr6 88310186 88310525 -61206512 + L1M4 LINE L1 49 420 -6122 5 1258 360 0 0 0 chr6 88311083 88311123 -61205914 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1258 199 281 80 40 chr6 88311559 88311659 -61205378 + MER5A DNA MER1_type 68 171 -18 5 1258 1147 276 102 16 chr6 88311812 88312313 -61204724 + L1M4 LINE L1 418 961 -5581 5 1258 367 297 16 158 chr6 88312366 88312397 -61204640 + B4 SINE B4 64 68 -224 5 1258 736 203 0 26 chr6 88312397 88312554 -61204483 + B1_Mur4 SINE Alu 1 149 -1 5 1258 402 134 0 0 chr6 88312601 88312668 -61204369 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1258 646 160 13 20 chr6 88312795 88312948 -61204089 + GA-rich Low_complexity Low_complexity 4 155 0 5 1258 268 318 57 38 chr6 88312948 88313130 -61203907 - MT2A LTR ERVL -320 213 29 5 1258 192 40 0 0 chr6 88313130 88313155 -61203882 + (CAAT)n Simple_repeat Simple_repeat 3 27 0 5 1258 268 318 57 38 chr6 88313155 88313181 -61203856 - MT2A LTR ERVL -505 28 3 5 1258 458 249 21 17 chr6 88313326 88313446 -61203591 + B1_Mur3 SINE Alu 27 141 -8 5 1258 387 0 0 0 chr6 88313447 88313490 -61203547 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1258 370 201 35 207 chr6 88313497 88313666 -61203371 + RMER15 LTR ERVL 6 145 -430 5 1258 526 228 221 33 chr6 88313695 88313935 -61203102 + RMER15 LTR ERVL 291 575 0 5 1258 368 151 151 0 chr6 88314196 88314282 -61202755 + L1M4b LINE L1 1951 2049 -5285 5 1258 228 216 156 22 chr6 88314373 88314463 -61202574 + L1M4b LINE L1 2292 2393 -4709 5 1258 498 259 60 48 chr6 88314555 88314757 -61202280 - ORR1D1 LTR MaLR 0 374 150 5 1258 262 305 71 99 chr6 88314851 88315062 -61201975 + MIRb SINE MIR 29 233 -35 5 1258 1093 254 50 44 chr6 88315236 88315515 -61201522 - MTD LTR MaLR -14 405 125 5 1258 425 291 83 25 chr6 88315515 88315635 -61201402 + B3A SINE B2 3 129 -69 5 1258 386 240 45 83 chr6 88315673 88315805 -61201232 - MTD LTR MaLR -294 127 1 5 1258 594 283 51 16 chr6 88315990 88316220 -61200817 - L1MA4A LINE L1 0 5880 5634 5 1258 1164 51 0 0 chr6 88316558 88316695 -61200342 - B1_Mm SINE Alu -10 137 1 6 1258 337 287 114 62 chr6 88316747 88316940 -61200097 + MIRb SINE MIR 50 252 -16 6 1258 351 309 35 28 chr6 88317233 88317376 -61199661 + Tigger13a DNA MER2_type 627 770 -1 6 1258 426 200 0 0 chr6 88317381 88317466 -61199571 - MER113 DNA MER1_type -198 323 239 6 1258 6118 117 0 43 chr6 88317975 88318935 -61198102 - Lx2 LINE L1 0 6997 6079 6 1258 777 28 64 0 chr6 88319518 88319659 -61197378 + (TC)n Simple_repeat Simple_repeat 1 150 0 6 1258 447 68 0 0 chr6 88319663 88319722 -61197315 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1258 202 56 56 0 chr6 88320145 88320181 -61196856 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1258 441 164 0 0 chr6 88321626 88321693 -61195344 + B1_Mus2 SINE Alu 73 139 -8 6 1258 252 77 0 0 chr6 88321693 88321732 -61195305 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 6 1258 1158 64 0 0 chr6 88321734 88321875 -61195162 + B1_Mus1 SINE Alu 2 142 -6 6 1258 207 219 0 0 chr6 88321878 88321919 -61195118 + A-rich Low_complexity Low_complexity 1 41 0 6 1258 529 311 88 35 chr6 88321957 88322141 -61194896 + L1M4 LINE L1 4299 4494 -1652 6 1258 1081 167 41 23 chr6 88322141 88322362 -61194675 - URR1A DNA MER1_type -1 225 1 6 1258 529 311 88 35 chr6 88322362 88322423 -61194614 + L1M4 LINE L1 4495 4553 -1593 6 1258 2972 49 0 0 chr6 88322423 88322769 -61194268 - ORR1A1 LTR MaLR 0 346 1 6 1258 529 311 88 35 chr6 88322769 88323012 -61194025 + L1M4 LINE L1 4554 4813 -1333 6 1258 1457 223 74 18 chr6 88323012 88323350 -61193687 + ORR1D2 LTR MaLR 1 357 -13 6 1258 311 314 23 45 chr6 88323350 88323527 -61193510 + L1M4 LINE L1 5496 5668 -506 6 1258 208 143 0 0 chr6 88323911 88323946 -61193091 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1258 296 190 35 6 chr6 88323960 88324036 -61193001 - B1_Mus1 SINE Alu -19 101 25 6 1258 357 82 0 0 chr6 88325153 88325202 -61191835 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1258 925 237 19 5 chr6 88328044 88328252 -61188785 + B3 SINE B2 1 211 -5 6 1258 432 0 0 0 chr6 88328604 88328652 -61188385 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1258 33 0 0 0 chr6 88330561 88330594 -61186443 + AT_rich Low_complexity Low_complexity 1 33 0 6 1258 396 0 0 0 chr6 88330716 88330760 -61186277 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1258 348 276 50 10 chr6 88330760 88330859 -61186178 - B3A SINE B2 -50 148 46 6 1258 197 191 64 0 chr6 88331040 88331087 -61185950 - MIRc SINE MIR -129 139 90 6 1258 420 304 99 26 chr6 88332528 88332680 -61184357 + RSINE1 SINE B4 3 165 0 6 1258 582 195 35 9 chr6 88332714 88332828 -61184209 + PB1D9 SINE Alu 1 117 -3 6 1258 1205 61 0 20 chr6 88333543 88333684 -61183353 + B1_Mus1 SINE Alu 2 142 -6 6 1258 426 20 0 0 chr6 88333684 88333735 -61183302 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1258 448 312 96 30 chr6 88333909 88334107 -61182930 - RMER15 LTR ERVL -18 557 347 6 1258 239 210 0 88 chr6 88334860 88334928 -61182109 + LTR87 LTR ERVL? 358 419 -205 6 1258 25 51 0 0 chr6 88335060 88335099 -61181938 + AT_rich Low_complexity Low_complexity 1 39 0 6 1258 478 300 0 8 chr6 88335892 88336013 -61181024 - PB1 SINE Alu -4 123 4 6 1258 982 296 43 16 chr6 88336682 88337004 -61180033 - MER102b DNA MER1_type -10 331 1 6 1258 275 197 98 0 chr6 88337727 88337788 -61179249 + ID4_ SINE ID 17 83 0 6 1258 211 250 19 37 chr6 88337743 88337797 -61179240 + ID_B1 SINE B4 39 91 -133 6 1258 190 259 69 0 chr6 88338862 88338920 -61178117 - L2c LINE L2 -72 3315 3254 6 1258 346 239 112 11 chr6 88339545 88339634 -61177403 - B1_Mur3 SINE Alu -51 98 1 6 1258 225 260 0 110 chr6 88339565 88339647 -61177390 - MT2B LTR ERVL -376 225 153 6 1258 281 222 110 14 chr6 88339688 88339761 -61177276 + PB1 SINE Alu 36 115 -12 6 1258 2004 228 22 24 chr6 88339762 88340367 -61176670 - Lx7 LINE L1 -1577 6067 5432 6 1258 2319 272 58 33 chr6 88340443 88341204 -61175833 + Lx9 LINE L1 6443 7222 -422 6 1258 21 71 0 0 chr6 88341478 88341520 -61175517 + AT_rich Low_complexity Low_complexity 1 42 0 6 1258 421 317 42 0 chr6 88342000 88342120 -61174917 + B4A SINE B4 3 127 -165 6 1258 609 124 0 0 chr6 88342195 88342292 -61174745 + (TG)n Simple_repeat Simple_repeat 1 97 0 6 1258 233 307 0 62 chr6 88342343 88342423 -61174614 - B4A SINE B4 -75 217 143 6 1259 261 331 38 15 chr6 88342881 88343013 -61174024 + MIR SINE MIR 32 166 -96 6 1259 213 119 0 0 chr6 88344580 88344622 -61172415 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1259 225 154 0 0 chr6 88346688 88346727 -61170310 + (CACCAT)n Simple_repeat Simple_repeat 6 44 0 6 1259 333 0 0 0 chr6 88347829 88347866 -61169171 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1259 888 224 30 0 chr6 88348050 88348215 -61168822 + B3 SINE B2 3 172 -44 6 1259 26 0 0 0 chr6 88349902 88349928 -61167109 + AT_rich Low_complexity Low_complexity 1 26 0 6 1259 706 190 0 55 chr6 88350011 88350156 -61166881 - B1_Mm SINE Alu -10 137 1 6 1259 313 177 12 12 chr6 88350185 88350265 -61166772 + GA-rich Low_complexity Low_complexity 4 83 0 6 1259 339 343 45 11 chr6 88351363 88351540 -61165497 + MER113 DNA MER1_type 79 261 -260 6 1259 631 210 56 0 chr6 88355533 88355700 -61161337 + ID_B1 SINE B4 3 224 0 6 1259 232 162 167 48 chr6 88355763 88355847 -61161190 + L1M5 LINE L1 3820 3913 -2233 6 1259 187 73 0 68 chr6 88355855 88355899 -61161138 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 6 1259 1084 266 8 17 chr6 88355979 88356216 -61160821 + 7SK RNA RNA 9 243 -88 6 1259 377 216 37 56 chr6 88356359 88356467 -61160570 - B1_Mur1 SINE Alu 0 149 44 6 1259 244 321 119 0 chr6 88357165 88357274 -61159763 + MER113A DNA MER1_type 50 171 -143 6 1259 1206 97 48 21 chr6 88357292 88357481 -61159556 + B2_Mm2 SINE B2 2 195 0 6 1259 22 0 0 0 chr6 88358199 88358221 -61158816 + AT_rich Low_complexity Low_complexity 1 22 0 6 1259 723 274 0 12 chr6 88358706 88358872 -61158165 + B3A SINE B2 1 164 -34 6 1259 189 0 0 0 chr6 88358875 88358896 -61158141 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1259 271 263 79 59 chr6 88360014 88360115 -61156922 + L1M5 LINE L1 5525 5627 -497 6 1259 225 306 70 31 chr6 88360115 88360243 -61156794 - RLTR13A2 LTR ERVK -130 828 696 6 1259 230 229 82 0 chr6 88360249 88360310 -61156727 - L4 LINE RTE 0 2029 1964 6 1259 773 194 28 0 chr6 88361063 88361207 -61155830 - B1_Mur2 SINE Alu 0 149 2 6 1259 680 211 27 12 chr6 88362033 88362210 -61154827 + B3 SINE B2 5 188 -7 6 1259 213 353 84 26 chr6 88363371 88363560 -61153477 + MIR SINE MIR 61 253 -9 6 1259 537 291 7 26 chr6 88364868 88365020 -61152017 + RSINE1 SINE B4 2 150 -15 6 1259 594 309 153 26 chr6 88365130 88365595 -61151442 + L1MB3 LINE L1 5621 6144 -39 6 1259 1111 212 52 92 chr6 88366711 88367106 -61149931 - MTE2a LTR MaLR -15 404 2 6 1259 972 128 0 26 chr6 88367736 88367888 -61149149 + B1_Mus1 SINE Alu 1 148 0 6 1259 231 282 11 86 chr6 88368028 88368047 -61148990 + MT2B LTR ERVL 151 162 -439 6 1259 387 244 75 55 chr6 88368047 88368153 -61148884 + B1_Mur2 SINE Alu 1 100 -20 6 1259 404 201 129 65 chr6 88368174 88368344 -61148693 + L1M4 LINE L1 5017 5197 -949 6 1259 586 247 151 6 chr6 88368345 88368504 -61148533 + B3A SINE B2 3 184 -14 6 1259 28 0 0 0 chr6 88368504 88368532 -61148505 + AT_rich Low_complexity Low_complexity 1 28 0 6 1259 245 320 48 0 chr6 88368535 88368638 -61148399 + L1MA5 LINE L1 5793 5900 -400 6 1259 294 288 38 9 chr6 88368792 88368897 -61148140 + L1MA5 LINE L1 6118 6225 -75 6 1259 1116 29 7 0 chr6 88368995 88369133 -61147904 + L1_Mus2 LINE L1 6428 6566 0 6 1259 1226 48 0 0 chr6 88369142 88369288 -61147749 + B1_Mus2 SINE Alu 2 147 0 6 1259 644 257 181 14 chr6 88369317 88369710 -61147327 + L1M4 LINE L1 5239 5705 -479 6 1259 324 237 43 26 chr6 88369713 88369830 -61147207 - L1M4 LINE L1 -355 5823 5705 6 1259 21 0 0 0 chr6 88369947 88369968 -61147069 + AT_rich Low_complexity Low_complexity 1 21 0 6 1259 900 234 104 21 chr6 88369968 88370256 -61146781 + L1MB3 LINE L1 5810 6121 -62 6 1259 526 329 0 63 chr6 88370270 88370417 -61146620 + RSINE1 SINE B4 2 140 -25 6 1259 516 56 0 0 chr6 88370417 88370489 -61146548 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 6 1259 526 329 0 63 chr6 88370489 88370516 -61146521 + RSINE1 SINE B4 141 165 0 6 1259 1319 167 5 0 chr6 88370686 88370901 -61146136 + B3 SINE B2 1 216 0 6 1259 1223 61 0 0 chr6 88370920 88371068 -61145969 + B1_Mus1 SINE Alu 1 148 0 6 1259 1181 82 0 0 chr6 88371111 88371257 -61145780 - B1_Mm SINE Alu 0 147 2 6 1259 585 28 0 0 chr6 88371516 88371587 -61145450 + (TAA)n Simple_repeat Simple_repeat 2 72 0 6 1259 235 222 53 53 chr6 88371739 88371815 -61145222 - ID4 SINE ID -5 78 3 6 1259 621 216 0 0 chr6 88372223 88372362 -61144675 + (CA)n Simple_repeat Simple_repeat 2 140 0 6 1259 550 234 65 58 chr6 88374309 88374463 -61142574 - RSINE1 SINE B4 0 165 11 6 1259 296 343 80 7 chr6 88377194 88377332 -61139705 - MIRm SINE MIR -128 148 1 6 1259 378 0 0 0 chr6 88377808 88377850 -61139187 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1259 252 219 129 50 chr6 88377853 88377954 -61139083 - MIRc SINE MIR -111 157 49 6 1259 302 277 67 38 chr6 88378527 88378632 -61138405 + HAL1-3A_ME LINE L1 2283 2390 -468 6 1259 1327 73 5 40 chr6 88378728 88378927 -61138110 + B2_Mm1a SINE B2 2 193 0 6 1259 24 0 0 0 chr6 88381150 88381174 -61135863 + AT_rich Low_complexity Low_complexity 1 24 0 7 1259 288 250 153 0 chr6 88381928 88382000 -61135037 + ID4 SINE ID 1 83 0 7 1259 332 94 19 0 chr6 88384597 88384650 -61132387 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 7 1259 194 338 24 24 chr6 88384806 88384888 -61132149 - L2c LINE L2 -169 3218 3137 7 1259 1161 37 0 0 chr6 88384896 88385031 -61132006 + B1_Mus2 SINE Alu 1 135 -12 7 1259 441 0 0 0 chr6 88385033 88385082 -61131955 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7 1259 1017 59 15 0 chr6 88386781 88386917 -61130120 + B1_Mus2 SINE Alu 10 147 0 7 1259 237 336 100 15 chr6 88387577 88387707 -61129330 + L2c LINE L2 3020 3160 -227 7 1259 948 181 0 13 chr6 88388104 88388255 -61128782 + B1_Mur1 SINE Alu 1 149 0 7 1259 1363 94 10 16 chr6 88388256 88388450 -61128587 + B2_Mm1t SINE B2 1 193 0 7 1259 1251 81 87 0 chr6 88388451 88388623 -61128414 + B2_Mm2 SINE B2 2 188 -7 7 1259 1443 70 11 0 chr6 88388630 88388815 -61128222 + B2_Mm1t SINE B2 1 187 -6 7 1259 461 224 105 52 chr6 88389063 88389178 -61127859 + PB1D10 SINE Alu 19 141 -9 7 1259 324 0 0 0 chr6 88390535 88390571 -61126466 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1259 191 346 43 35 chr6 88391672 88391813 -61125224 + MIRb SINE MIR 116 257 -11 7 1259 594 164 196 88 chr6 88391908 88392102 -61124935 - B3 SINE B2 0 216 2 7 1259 894 134 73 34 chr6 88392202 88392379 -61124658 - URR1B DNA MER1_type -29 196 13 7 1259 358 286 50 8 chr6 88392751 88392871 -61124166 - PB1 SINE Alu -2 125 1 7 1259 671 216 60 0 chr6 88393366 88393500 -61123537 + B1_Mur2 SINE Alu 1 142 -7 7 1259 283 318 45 9 chr6 88394385 88394496 -61122541 - Tigger5 DNA MER2_type -1 2405 2291 7 1259 365 280 210 0 chr6 88394519 88394662 -61122375 - Tigger5 DNA MER2_type -2196 210 38 7 1259 189 0 0 0 chr6 88394710 88394731 -61122306 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 7 1259 240 277 15 0 chr6 88394764 88394829 -61122208 - ID4_ SINE ID -17 66 1 7 1259 493 195 12 6 chr6 88396714 88396874 -61120163 + (TCCA)n Simple_repeat Simple_repeat 4 164 0 7 1259 251 71 24 0 chr6 88396885 88396927 -61120110 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 1259 898 67 142 0 chr6 88396927 88397047 -61119990 - B1_Mus1 SINE Alu -11 137 1 7 1259 293 293 59 20 chr6 88397655 88397756 -61119281 + ORR1E LTR MaLR 2 106 -253 7 1259 333 273 99 33 chr6 88398005 88398187 -61118850 - RMER15 LTR ERVL -2 573 380 7 1259 399 277 129 68 chr6 88398589 88398736 -61118301 + MLT1A LTR MaLR 1 156 -218 7 1259 321 89 0 0 chr6 88398789 88398834 -61118203 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 7 1259 362 314 37 28 chr6 88399709 88399817 -61117220 + PB1D10 SINE Alu 9 117 0 7 1259 1090 211 29 0 chr6 88399967 88400171 -61116866 - B3 SINE B2 -6 210 1 7 1259 502 291 58 64 chr6 88400498 88400828 -61116209 + L1ME2z LINE L1 5940 6267 -177 7 1259 410 267 20 10 chr6 88400844 88400946 -61116091 + PB1 SINE Alu 25 127 0 7 1259 522 236 202 4 chr6 88401091 88401317 -61115720 + MTEa LTR MaLR 33 370 -9 7 1259 230 303 117 18 chr6 88401420 88401531 -61115506 + MER46C DNA MER2_type 1 122 -216 7 1259 382 321 101 96 chr6 88401807 88402152 -61114885 + ORR1D1 LTR MaLR 24 370 -4 7 1259 219 36 0 0 chr6 88402231 88402259 -61114778 + (TTG)n Simple_repeat Simple_repeat 1 28 0 7 1259 603 0 0 0 chr6 88402265 88402332 -61114705 + (GTTTG)n Simple_repeat Simple_repeat 2 68 0 7 1259 884 120 75 0 chr6 88402332 88402458 -61114579 - B1_Mur3 SINE Alu -8 141 6 7 1259 2168 129 57 3 chr6 88402582 88402932 -61114105 - ORR1C1 LTR MaLR -8 370 2 7 1259 778 185 20 172 chr6 88403510 88403765 -61113272 - B3 SINE B2 0 216 1 7 1259 2453 106 58 56 chr6 88404330 88404779 -61112258 - RLTR11B LTR ERVK -3 450 1 7 1259 458 214 12 0 chr6 88404783 88404867 -61112170 + ID_B1 SINE B4 15 99 -125 7 1259 936 72 8 4 chr6 88404880 88405037 -61112000 + L1Md_F2 LINE L1 5700 5863 -719 7 1259 4497 46 6 0 chr6 88405037 88405576 -61111461 + L1Md_F2 LINE L1 6040 6581 -1 7 1259 429 248 0 33 chr6 88405576 88405588 -61111449 + L1MA4A LINE L1 5895 5904 -399 7 1259 481 321 0 15 chr6 88405617 88405750 -61111287 + ID_B1 SINE B4 82 212 -12 7 1259 522 192 135 23 chr6 88405782 88405915 -61111122 + B1F2 SINE Alu 2 149 0 7 1259 1292 164 158 12 chr6 88406015 88406274 -61110763 + MTC LTR MaLR 117 413 -8 7 1259 208 354 79 18 chr6 88406583 88406743 -61110294 + L2a LINE L2 3064 3237 -189 7 1259 268 164 197 56 chr6 88406743 88406814 -61110223 - ID2 SINE ID 0 83 3 7 1259 208 354 79 18 chr6 88406814 88406880 -61110157 + L2a LINE L2 3238 3304 -122 7 1259 548 222 0 25 chr6 88407787 88407907 -61109130 + PB1D9 SINE Alu 1 117 -3 7 1259 351 0 0 0 chr6 88407924 88407963 -61109074 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1259 598 226 167 7 chr6 88407967 88408105 -61108932 + RSINE1 SINE B4 3 162 -3 7 1259 560 268 124 14 chr6 88408149 88408440 -61108597 - L1M4 LINE L1 -543 5637 5315 7 1259 956 208 81 5 chr6 88408442 88408640 -61108397 - B3 SINE B2 -3 213 1 7 1259 316 160 0 0 chr6 88408771 88408821 -61108216 - B1_Mur4 SINE Alu -82 68 19 7 1259 1126 70 0 0 chr6 88408815 88408957 -61108080 + B1_Mm SINE Alu 6 147 0 7 1259 490 236 241 31 chr6 88408974 88409136 -61107901 + B3A SINE B2 3 198 0 7 1259 438 108 0 0 chr6 88409192 88409257 -61107780 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1259 513 197 0 0 chr6 88409257 88409333 -61107704 - ID4 SINE ID -4 79 4 7 1259 247 337 11 22 chr6 88409409 88409500 -61107537 - PB1D10 SINE Alu -21 96 7 7 1259 434 301 36 22 chr6 88409569 88409708 -61107329 + ID_B1 SINE B4 84 224 0 7 1259 360 278 74 0 chr6 88409720 88409828 -61107209 - L1M4 LINE L1 -3282 2864 2749 7 1259 534 206 231 24 chr6 88409833 88410002 -61107035 + B3 SINE B2 3 206 -10 7 1259 467 161 10 70 chr6 88410019 88410119 -61106918 - B3 SINE B2 0 216 123 7 1259 3320 24 37 0 chr6 88410124 88410506 -61106531 - MTA_Mm LTR MaLR 0 396 1 7 1259 238 61 0 0 chr6 88410507 88410540 -61106497 - MTD LTR MaLR 0 419 387 7 1259 963 105 0 0 chr6 88410536 88410660 -61106377 + B3 SINE B2 6 129 -87 7 1259 198 0 0 0 chr6 88410677 88410699 -61106338 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 7 1259 1752 179 43 71 chr6 88410702 88411041 -61105996 - MTD LTR MaLR -34 385 50 7 1259 414 0 0 0 chr6 88411041 88411087 -61105950 + (TTA)n Simple_repeat Simple_repeat 2 47 0 7 1259 1162 85 0 0 chr6 88411092 88411233 -61105804 - B1_Mm SINE Alu -5 142 2 7 1259 1752 179 43 71 chr6 88411233 88411283 -61105754 - MTD LTR MaLR -370 49 1 7 1259 621 264 8 0 chr6 88411283 88411402 -61105635 - B3A SINE B2 -70 128 9 7 1259 203 312 30 40 chr6 88411495 88411595 -61105442 + L2c LINE L2 3108 3206 -181 7 1259 1941 172 75 21 chr6 88411650 88411732 -61105305 - ORR1B1 LTR MaLR 0 394 318 7 1259 1837 108 40 156 chr6 88411732 88411831 -61105206 - ORR1A4 LTR MaLR 0 329 288 7 1259 1177 82 0 0 chr6 88411831 88411977 -61105060 - B1_Mus2 SINE Alu -1 146 1 7 1259 1837 108 40 156 chr6 88411977 88412249 -61104788 - ORR1A4 LTR MaLR -42 287 1 7 1259 1941 172 75 21 chr6 88412249 88412540 -61104497 - ORR1B1 LTR MaLR -77 317 1 7 1259 782 91 204 0 chr6 88413251 88413383 -61103654 + B2_Mm2 SINE B2 3 161 -34 7 1259 456 19 0 0 chr6 88413383 88413436 -61103601 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 7 1259 945 212 58 10 chr6 88413465 88413670 -61103367 + B3 SINE B2 2 216 0 7 1259 1204 68 0 0 chr6 88413682 88413829 -61103208 + B1_Mus1 SINE Alu 2 148 0 7 1259 34 0 0 0 chr6 88413829 88413863 -61103174 + AT_rich Low_complexity Low_complexity 1 34 0 7 1259 818 89 0 0 chr6 88414194 88414306 -61102731 + B1_Mus2 SINE Alu 36 147 0 7 1259 325 243 50 116 chr6 88414199 88414320 -61102717 + B4 SINE B4 126 238 -54 7 1259 314 226 272 10 chr6 88414569 88414672 -61102365 + B1_Mus2 SINE Alu 5 134 -13 7 1259 228 100 0 0 chr6 88414701 88414741 -61102296 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 7 1259 1162 61 0 0 chr6 88414741 88414889 -61102148 - B1_Mus1 SINE Alu 0 148 1 7 1259 295 203 64 16 chr6 88414781 88414906 -61102131 - ORR1B1-int LTR MaLR -755 754 624 7 1259 909 126 41 14 chr6 88416483 88416628 -61100409 - B1_Mur2 SINE Alu 0 149 1 7 1259 572 182 163 16 chr6 88416700 88416823 -61100214 - RSINE1 SINE B4 -22 143 3 7 1259 1135 108 0 0 chr6 88417096 88417244 -61099793 - B1_Mus1 SINE Alu 0 148 1 7 1259 525 16 0 0 chr6 88417969 88418031 -61099006 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1259 592 248 62 21 chr6 88418049 88418193 -61098844 - RSINE1 SINE B4 -14 151 2 7 1259 583 213 21 42 chr6 88418205 88418347 -61098690 - ID_B1 SINE B4 -1 223 85 7 1259 502 194 87 0 chr6 88418542 88418645 -61098392 - B1_Mur4 SINE Alu -27 123 12 7 1259 232 244 115 58 chr6 88418580 88418667 -61098370 - MT2B LTR ERVL -362 239 148 7 1259 280 159 0 0 chr6 88418886 88418930 -61098107 - ID_B1 SINE B4 -5 219 176 7 1259 303 28 0 0 chr6 88419035 88419071 -61097966 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1259 441 287 16 16 chr6 88419718 88419842 -61097195 - B1F SINE Alu -12 137 14 7 1259 648 268 26 58 chr6 88420083 88420273 -61096764 + B3A SINE B2 10 193 -5 7 1259 285 29 0 0 chr6 88420316 88420350 -61096687 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1259 750 152 8 0 chr6 88420599 88420717 -61096320 - B1_Mus2 SINE Alu -20 127 9 7 1259 418 274 60 0 chr6 88420613 88420730 -61096307 - B4 SINE B4 -88 204 81 7 1259 231 36 0 0 chr6 88420905 88420933 -61096104 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1259 268 311 4 39 chr6 88421732 88421783 -61095254 + ID SINE ID 45 83 -141 8 1259 244 302 130 0 chr6 88421783 88421894 -61095143 + PB1D10 SINE Alu 3 127 0 8 1259 202 187 52 52 chr6 88423227 88423323 -61093714 + (TGGG)n Simple_repeat Simple_repeat 2 97 0 8 1259 508 172 13 61 chr6 88423640 88423753 -61093284 - B1_Mur1 SINE Alu -32 117 1 8 1259 597 152 114 0 chr6 88423861 88423966 -61093071 - B1_Mur4 SINE Alu -27 123 7 8 1259 218 279 89 0 chr6 88424189 88424268 -61092769 - MIRb SINE MIR -130 138 53 8 1259 234 0 0 0 chr6 88424427 88424453 -61092584 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1259 1497 43 5 0 chr6 88425158 88425345 -61091692 - B2_Mm1a SINE B2 0 193 6 8 1259 1042 74 15 15 chr6 88425345 88425482 -61091555 - B1_Mur4 SINE Alu -13 137 1 8 1259 625 274 82 22 chr6 88425512 88425695 -61091342 + B3A SINE B2 4 197 -1 8 1259 311 265 39 39 chr6 88426046 88426148 -61090889 - PB1 SINE Alu -7 120 19 8 1259 309 51 0 0 chr6 88426226 88426265 -61090772 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 8 1259 234 273 121 0 chr6 88426278 88426377 -61090660 - PB1D9 SINE Alu -9 111 1 8 1259 25 0 0 0 chr6 88426453 88426478 -61090559 + AT_rich Low_complexity Low_complexity 1 25 0 8 1259 222 184 0 0 chr6 88428233 88428271 -61088766 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 8 1259 313 288 12 12 chr6 88428369 88428450 -61088587 + PB1D10 SINE Alu 2 82 -35 8 1259 361 351 76 0 chr6 88428526 88428657 -61088380 + RSINE1 SINE B4 13 153 -12 8 1259 490 293 0 133 chr6 88428735 88428908 -61088129 + B3A SINE B2 44 193 -5 8 1259 1231 41 14 0 chr6 88429649 88429794 -61087243 - B1_Mus2 SINE Alu 0 147 1 8 1259 227 312 65 0 chr6 88430173 88430250 -61086787 + MLT1M LTR MaLR 581 662 -10 8 1259 188 256 168 32 chr6 88430305 88430430 -61086607 + MIR3 SINE MIR 67 208 0 8 1259 479 267 102 14 chr6 88431100 88431334 -61085703 - L1MB8 LINE L1 -30 6132 5881 8 1259 795 132 50 22 chr6 88434085 88434224 -61082813 + B1_Mur3 SINE Alu 1 143 -6 8 1259 316 227 43 64 chr6 88434938 88435032 -61082005 - PB1D7 SINE Alu -11 109 18 8 1259 195 174 41 61 chr6 88436138 88436187 -61080850 - MIRb SINE MIR -94 174 127 8 1259 238 272 64 55 chr6 88437713 88437822 -61079215 - ID_B1 SINE B4 -17 207 98 8 1259 328 237 104 73 chr6 88437822 88437986 -61079051 - L1M4 LINE L1 -821 5325 5157 8 1259 237 333 38 13 chr6 88438006 88438085 -61078952 + BC1_Mm scRNA scRNA 3 83 -69 8 1259 312 323 84 21 chr6 88438136 88438326 -61078711 - L1M4 LINE L1 -1052 5094 4893 8 1259 683 243 51 28 chr6 88438326 88438504 -61078533 - B3A SINE B2 -15 183 2 8 1259 228 364 35 35 chr6 88438690 88438804 -61078233 + MER20 DNA MER1_type 1 114 -105 8 1259 395 302 120 21 chr6 88439664 88439806 -61077231 - ID_B1 SINE B4 -53 171 16 8 1259 802 244 39 44 chr6 88439922 88440128 -61076909 - B3 SINE B2 0 216 12 8 1259 234 0 0 0 chr6 88440427 88440453 -61076584 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 8 1259 305 263 77 26 chr6 88440526 88440604 -61076433 - RSINE1 SINE B4 -83 82 1 8 1259 374 286 154 44 chr6 88440899 88441126 -61075911 + L1M5 LINE L1 5313 5564 -560 8 1259 515 206 125 19 chr6 88441895 88441999 -61075038 + PB1D10 SINE Alu 2 116 -1 8 1259 523 293 95 28 chr6 88442017 88442196 -61074841 + ID_B1 SINE B4 5 195 -29 8 1259 236 231 15 30 chr6 88442517 88442584 -61074453 - MTEb LTR MaLR -20 359 294 8 1259 1285 218 123 11 chr6 88442961 88443319 -61073718 + MTD LTR MaLR 1 398 -21 8 1259 224 347 13 39 chr6 88444024 88444102 -61072935 - ID4 SINE ID -7 76 1 8 1259 448 165 10 40 chr6 88447574 88447675 -61069362 - B3A SINE B2 0 198 101 8 1259 325 275 105 7 chr6 88447877 88448020 -61069017 - L1MC3 LINE L1 -275 7510 7354 8 1259 414 269 57 9 chr6 88448342 88448447 -61068590 - PB1D7 SINE Alu -8 112 3 8 1259 21 0 0 0 chr6 88450119 88450140 -61066897 + GC_rich Low_complexity Low_complexity 1 21 0 8 1259 391 166 68 33 chr6 88450467 88450599 -61066438 - B1F2 SINE Alu -2 147 14 8 1259 354 267 38 47 chr6 88451717 88451823 -61065214 - PB1D9 SINE Alu -15 105 1 8 1259 589 238 217 5 chr6 88452464 88452671 -61064366 - MTE2b LTR MaLR -62 317 67 8 1259 290 237 91 106 chr6 88452602 88452734 -61064303 - MT2A LTR ERVL -392 141 12 8 1259 33 0 0 0 chr6 88454970 88455003 -61062034 + AT_rich Low_complexity Low_complexity 1 33 0 8 1259 25 31 0 0 chr6 88456277 88456309 -61060728 + AT_rich Low_complexity Low_complexity 1 32 0 8 1259 684 153 122 0 chr6 88456309 88456440 -61060597 - B1_Mur4 SINE Alu -1 149 3 8 1259 492 270 84 39 chr6 88457905 88458059 -61058978 - RSINE1 SINE B4 -4 161 1 8 1259 638 242 38 0 chr6 88458204 88458336 -61058701 + B1_Mur1 SINE Alu 2 138 -11 8 1259 327 25 0 0 chr6 88458336 88458376 -61058661 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 8 1259 3428 149 143 16 chr6 88458742 88459377 -61057660 + RMER6D LTR ERVK 1 716 -4 8 1259 1667 21 21 0 chr6 88459423 88459612 -61057425 - B2_Mm1a SINE B2 0 193 1 8 1259 256 355 0 0 chr6 88461537 88461613 -61055424 - PB1D10 SINE Alu -41 76 1 8 1259 374 301 42 55 chr6 88463290 88463455 -61053582 + RSINE1 SINE B4 1 163 -2 8 1259 24 0 0 0 chr6 88463455 88463479 -61053558 + AT_rich Low_complexity Low_complexity 1 24 0 8 1259 475 309 13 32 chr6 88463496 88463650 -61053387 + RSINE1 SINE B4 1 151 -14 8 1259 335 294 71 0 chr6 88463685 88463811 -61053226 - BC1_Mm scRNA scRNA -15 137 3 8 1259 1134 246 106 12 chr6 88465936 88466277 -61050760 + MTEb LTR MaLR 3 375 -4 8 1259 898 132 12 6 chr6 88466471 88466639 -61050398 + (GAAA)n Simple_repeat Simple_repeat 2 170 0 8 1259 194 40 37 74 chr6 88467616 88467670 -61049367 + A-rich Low_complexity Low_complexity 1 52 0 8 1259 23 54 0 0 chr6 88468797 88468834 -61048203 + GC_rich Low_complexity Low_complexity 1 37 0 8 1259 459 204 118 22 chr6 88469742 88469877 -61047160 - B1F2 SINE Alu 0 149 2 8 1259 21 36 0 0 chr6 88469926 88469954 -61047083 + AT_rich Low_complexity Low_complexity 1 28 0 8 1259 535 209 38 9 chr6 88470067 88470173 -61046864 - B3A SINE B2 -89 109 1 8 1259 338 258 155 90 chr6 88470393 88470481 -61046556 + B3 SINE B2 3 106 -110 8 1259 730 119 278 0 chr6 88470481 88470632 -61046405 - B2_Mm1t SINE B2 0 193 1 8 1259 338 258 155 90 chr6 88470632 88470743 -61046294 + B3 SINE B2 107 215 -1 8 1259 328 202 182 0 chr6 88470988 88471087 -61045950 + PB1D10 SINE Alu 1 117 0 8 1259 308 302 49 98 chr6 88471141 88471284 -61045753 + RSINE1 SINE B4 1 136 -29 8 1259 886 212 31 9 chr6 88472103 88472279 -61044758 + B3A SINE B2 2 191 -4 8 1259 814 188 27 14 chr6 88472285 88472431 -61044606 + B1_Mur1 SINE Alu 1 148 -1 8 1259 236 237 195 13 chr6 88472758 88472835 -61044202 + ORR1E LTR MaLR 51 141 -218 8 1259 473 184 9 0 chr6 88472975 88473084 -61043953 + CT-rich Low_complexity Low_complexity 3 112 0 8 1259 1091 92 7 0 chr6 88473084 88473225 -61043812 - B1_Mus1 SINE Alu -5 143 2 8 157 362 343 168 6 chr6 88473315 88473649 -61043388 - HAL1 LINE L1 -465 2042 1655 8 1260 207 0 0 0 chr6 88473928 88473951 -61043086 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1260 402 313 51 57 chr6 88473973 88474149 -61042888 - MER53 DNA hAT -9 184 10 8 1260 1139 76 0 14 chr6 88474407 88474554 -61042483 + B1_Mus2 SINE Alu 1 145 -2 8 1260 330 184 0 0 chr6 88474561 88474637 -61042400 + A-rich Low_complexity Low_complexity 1 76 0 8 1260 2150 100 12 43 chr6 88474670 88474995 -61042042 - ORR1A2 LTR MaLR -8 319 5 8 1260 417 317 62 46 chr6 88475328 88475523 -61041514 - MER58A DNA MER1_type -12 212 15 8 1260 310 335 167 23 chr6 88475589 88475621 -61041416 + L1M4b LINE L1 464 498 -6836 8 1260 6703 29 5 1 chr6 88475621 88476406 -61040631 + L1Md_F3 LINE L1 5796 6583 -1 8 1260 310 335 167 23 chr6 88476406 88476547 -61040490 + L1M4b LINE L1 499 662 -6672 8 1260 2441 152 13 13 chr6 88476848 88477242 -61039795 - ORR1B1 LTR MaLR 0 394 1 8 1260 744 157 110 15 chr6 88477360 88477496 -61039541 - B1_Mur2 SINE Alu 0 149 1 8 1260 527 201 13 65 chr6 88477500 88477670 -61039367 - ID_B1 SINE B4 -2 222 18 8 1260 532 222 6 146 chr6 88477718 88477876 -61039161 - B3 SINE B2 0 195 60 8 1260 794 269 70 20 chr6 88477888 88478130 -61038907 + RLTR12B LTR ERVK 11 277 -251 8 1260 569 14 14 0 chr6 88478130 88478200 -61038837 + (TG)n Simple_repeat Simple_repeat 1 71 0 8 1260 794 294 88 79 chr6 88478200 88478456 -61038581 + RLTR12B LTR ERVK 259 508 -60 8 1260 236 154 0 0 chr6 88478566 88478605 -61038432 - B3A SINE B2 -157 41 3 8 1260 324 339 78 64 chr6 88478724 88479020 -61038017 - L1MEc LINE L1 -4383 2017 1718 8 1260 390 299 144 19 chr6 88479445 88479653 -61037384 - L1MEc LINE L1 -5189 1211 978 8 1260 257 273 84 36 chr6 88480066 88480233 -61036804 + L1M2b LINE L1 1189 1363 -5846 8 1260 279 276 45 11 chr6 88480349 88480437 -61036600 - ORR1E LTR MaLR 0 379 289 8 1260 491 309 86 16 chr6 88480530 88480744 -61036293 - ORR1E LTR MaLR -142 232 12 8 1260 1543 219 134 56 chr6 88480754 88481233 -61035804 - RMER1C Other Other -4 1338 823 8 1260 2704 147 29 5 chr6 88481875 88482286 -61034751 - MTC LTR MaLR 0 421 1 8 1260 3008 138 30 8 chr6 88483145 88483713 -61033324 - Lx6 LINE L1 -1525 5935 5354 8 1260 7375 70 25 18 chr6 88483704 88484830 -61032207 - MusHAL1 LINE L1 -1167 1545 412 9 1260 1317 103 0 0 chr6 88484828 88485023 -61032014 - Lx6 LINE L1 -726 5154 4960 8 1260 572 311 88 88 chr6 88485032 88485617 -61031420 + RLTR26 LTR ERVK 2 619 -23 9 1260 11837 115 67 103 chr6 88485684 88487065 -61029972 - L1_Mur3 LINE L1 -2018 3862 2422 9 1260 825 185 1 14 chr6 88487065 88487219 -61029818 + B1_Mus2 SINE Alu 1 146 -3 9 1260 2275 181 58 76 chr6 88487220 88487758 -61029279 + RLTR11A LTR ERVK 1 528 0 9 1260 11837 116 68 90 chr6 88487758 88488475 -61028562 - L1_Mur3 LINE L1 -3460 2420 1680 9 1260 230 0 0 0 chr6 88488475 88488504 -61028533 - B3A SINE B2 -168 30 2 9 1260 11837 116 68 90 chr6 88488504 88489155 -61027882 - L1_Mur3 LINE L1 -3460 1679 1005 9 1260 1126 98 98 0 chr6 88489170 88489334 -61027703 + B2_Mm2 SINE B2 2 181 -14 9 1260 2325 170 154 5 chr6 88489369 88489817 -61027220 + RMER20A LTR ERVK 1 515 -1 9 1260 3873 192 97 50 chr6 88489818 88490757 -61026280 - RMER1B Other Other -34 1032 50 9 1260 3126 162 26 78 chr6 88490766 88491530 -61025507 - L1_Mur3 LINE L1 -6707 1021 298 9 1260 259 273 13 0 chr6 88491940 88492017 -61025020 + (TA)n Simple_repeat Simple_repeat 1 78 0 9 1260 232 284 123 114 chr6 88492286 88492412 -61024625 + MLT1D LTR MaLR 1 113 -392 9 1260 3404 43 5 0 chr6 88492412 88492806 -61024231 + MTA_Mm LTR MaLR 1 396 0 9 1260 9015 42 11 3 chr6 88492806 88493895 -61023142 + MTA_Mm-int LTR MaLR 1 1098 0 9 1260 3493 25 5 0 chr6 88493895 88494289 -61022748 + MTA_Mm LTR MaLR 1 396 0 9 1260 405 322 185 40 chr6 88494289 88494597 -61022440 + MLT1D LTR MaLR 114 480 -25 9 1260 380 200 137 0 chr6 88494685 88494780 -61022257 + PB1D10 SINE Alu 1 108 -9 9 1260 228 149 0 0 chr6 88494781 88494828 -61022209 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1260 279 0 0 0 chr6 88494952 88494983 -61022054 + (CCTG)n Simple_repeat Simple_repeat 2 32 0 9 1260 213 290 81 29 chr6 88496006 88496111 -61020926 - MIR SINE MIR -38 230 112 9 1260 308 192 80 27 chr6 88497911 88497986 -61019051 + L1MDa LINE L1 2439 2517 -4116 9 1260 948 209 75 25 chr6 88498101 88498302 -61018735 + B3 SINE B2 3 213 -3 9 1260 693 254 93 11 chr6 88498796 88498979 -61018058 - B3A SINE B2 0 198 1 9 1260 35 0 0 0 chr6 88499150 88499185 -61017852 + AT_rich Low_complexity Low_complexity 1 35 0 9 1260 727 283 101 34 chr6 88500671 88500967 -61016070 + RCHARR1 DNA MER1_type 7 322 -652 1 1260 4339 141 105 73 chr6 88500970 88501844 -61015193 + RMER19B LTR ERVK 1 902 0 2 1260 200 173 39 0 chr6 88501886 88501938 -61015099 + CT-rich Low_complexity Low_complexity 3 56 0 3 1260 587 235 36 7 chr6 88501944 88501959 -61015078 - B1_Mur2 SINE Alu -6 143 129 4 1260 558 0 0 0 chr6 88501959 88502021 -61015016 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1260 587 235 36 7 chr6 88502021 88502142 -61014895 - B1_Mur2 SINE Alu -21 128 3 4 1260 725 241 100 24 chr6 88502161 88502361 -61014676 - B3 SINE B2 -1 194 5 6 1260 1325 196 63 26 chr6 88502364 88502394 -61014643 + RCHARR1 DNA MER1_type 341 369 -605 1 1260 2486 135 71 9 chr6 88502394 88502819 -61014218 + RLTR11B LTR ERVK 1 451 -2 7 1260 1325 196 63 26 chr6 88502819 88503135 -61013902 + RCHARR1 DNA MER1_type 370 700 -274 1 1260 1010 233 173 3 chr6 88503135 88503453 -61013584 + MTEa LTR MaLR 1 372 -7 8 1260 341 218 5 157 chr6 88503456 88503641 -61013396 + RCHARR1 DNA MER1_type 706 862 -112 1 1260 204 40 0 0 chr6 88504880 88504905 -61012132 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1260 2269 111 67 11 chr6 88505306 88505678 -61011359 - MTC LTR MaLR -28 393 1 1 1260 234 284 54 0 chr6 88505686 88505760 -61011277 + PB1 SINE Alu 43 120 -7 1 1260 389 188 12 36 chr6 88506499 88506582 -61010455 + ID4_ SINE ID 2 82 -1 1 1260 542 285 18 72 chr6 88507084 88507307 -61009730 + B3 SINE B2 2 212 -4 1 1260 25 0 0 0 chr6 88507379 88507404 -61009633 + AT_rich Low_complexity Low_complexity 1 25 0 1 1260 1240 48 0 0 chr6 88508631 88508778 -61008259 - B1_Mm SINE Alu 0 147 1 1 1260 214 246 32 161 chr6 88508906 88508962 -61008075 - B2_Mm1t SINE B2 -5 188 133 1 1260 414 88 0 0 chr6 88508962 88509030 -61008007 + (TCTG)n Simple_repeat Simple_repeat 1 68 0 1 1260 306 0 0 0 chr6 88509033 88509067 -61007970 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1260 422 241 65 29 chr6 88509067 88509185 -61007852 - B3A SINE B2 -47 151 14 1 1260 544 274 65 63 chr6 88509274 88509617 -61007420 - ORR1E LTR MaLR -4 375 1 1 1260 705 134 8 8 chr6 88510181 88510301 -61006736 - B1_Mur1 SINE Alu -29 120 1 2 1260 449 147 168 0 chr6 88510348 88510443 -61006594 + B3 SINE B2 1 111 -105 2 1260 267 31 0 0 chr6 88510639 88510671 -61006366 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1260 261 0 0 0 chr6 88510671 88510699 -61006338 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1260 413 240 113 86 chr6 88510713 88511005 -61006032 - L1M5 LINE L1 -604 5575 5276 2 1260 2595 152 132 101 chr6 88511091 88511684 -61005353 + RMER19C LTR ERVK 1 611 0 2 1260 616 196 111 15 chr6 88511731 88511866 -61005171 + B1_Mur2 SINE Alu 1 148 -1 2 1260 609 307 49 38 chr6 88511874 88512240 -61004797 - L1MDa LINE L1 -1288 5249 4880 2 1260 350 268 41 10 chr6 88512324 88512422 -61004615 - ID_B1 SINE B4 -9 215 115 2 1260 273 57 0 0 chr6 88512444 88512479 -61004558 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1260 608 189 9 0 chr6 88512479 88512590 -61004447 - PB1D9 SINE Alu -8 112 1 3 1260 461 225 36 0 chr6 88512640 88512751 -61004286 - PB1D10 SINE Alu -1 116 2 3 1260 333 304 33 74 chr6 88513021 88513263 -61003774 - L1MDa LINE L1 -4171 2462 2231 2 1260 23 33 0 0 chr6 88513281 88513311 -61003726 + AT_rich Low_complexity Low_complexity 1 30 0 3 1260 379 297 149 22 chr6 88513462 88513781 -61003256 - L1MDa LINE L1 -4588 2045 1681 2 1260 687 266 6 19 chr6 88514070 88514231 -61002806 + RSINE1 SINE B4 3 161 -4 3 1260 254 294 162 27 chr6 88514307 88514492 -61002545 + MIR SINE MIR 1 210 -52 3 1260 826 315 102 17 chr6 88515572 88516050 -61000987 - L1MB8 LINE L1 -231 5947 5429 3 1260 505 105 0 0 chr6 88516124 88516200 -61000837 - BC1_Mm scRNA scRNA -76 76 1 3 1260 247 204 20 0 chr6 88516161 88516210 -61000827 - ZP3AR Satellite Satellite -131 81 32 3 1260 649 112 239 0 chr6 88516255 88516389 -61000648 + Lx9 LINE L1 7307 7472 -172 3 1260 393 112 25 12 chr6 88516389 88516470 -61000567 + Lx9 LINE L1 7562 7643 -1 3 1260 396 18 0 17 chr6 88516492 88516550 -61000487 + L1Md_F2 LINE L1 6523 6579 -3 3 1260 664 291 97 25 chr6 88516707 88517028 -61000009 - L1MB8 LINE L1 -1069 5077 4734 3 1260 2061 80 31 16 chr6 88517142 88517459 -60999578 - RLTRETN_Mm LTR ERVK 0 322 1 4 1260 11702 50 8 21 chr6 88517459 88518943 -60998094 - MMETn-int LTR ERVK 0 4844 3380 4 1260 26570 47 1 4 chr6 88518944 88523127 -60993910 - MMETn-int LTR ERVK -2124 5282 1 4 1260 2061 80 31 16 chr6 88523127 88523444 -60993593 - RLTRETN_Mm LTR ERVK 0 322 1 4 1260 221 161 23 69 chr6 88523499 88523586 -60993451 + A-rich Low_complexity Low_complexity 3 85 0 4 1260 341 280 179 7 chr6 88523700 88523851 -60993186 - B3 SINE B2 -1 215 39 4 1260 1670 271 82 14 chr6 88523860 88524321 -60992716 - L1MB8 LINE L1 -1686 4460 3958 3 1260 1807 114 70 22 chr6 88524321 88524634 -60992403 - ORR1A4 LTR MaLR 0 329 2 4 1260 1670 271 82 14 chr6 88524634 88524815 -60992222 - L1MB8 LINE L1 -2189 3957 3774 3 1260 243 234 11 115 chr6 88524926 88525013 -60992024 - B4A SINE B4 -2 290 213 4 1260 770 204 71 6 chr6 88525041 88525085 -60991952 - B3 SINE B2 -11 205 151 4 1260 441 0 0 0 chr6 88525085 88525134 -60991903 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1260 770 204 71 6 chr6 88525134 88525257 -60991780 - B3 SINE B2 -66 150 27 4 1260 386 20 20 0 chr6 88525268 88525319 -60991718 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 4 1260 1043 112 0 0 chr6 88525319 88525471 -60991566 - B2_Mm2 SINE B2 -33 162 11 4 1260 679 273 6 28 chr6 88525495 88525676 -60991361 - B3A SINE B2 -18 180 4 5 1260 257 232 36 0 chr6 88525679 88525735 -60991302 - B4A SINE B4 -96 196 139 4 1260 238 265 0 0 chr6 88525773 88525822 -60991215 - B4A SINE B4 -243 49 1 4 1260 405 210 37 0 chr6 88525849 88525930 -60991107 - L1MB8 LINE L1 -2491 3655 3572 3 1260 434 327 163 20 chr6 88526011 88526410 -60990627 - LTR40b LTR ERVL 0 462 7 5 1260 398 317 24 0 chr6 88526874 88526997 -60990040 + B1F2 SINE Alu 18 143 -6 5 1260 256 211 63 38 chr6 88527144 88527223 -60989814 + MLT1C LTR MaLR 361 441 -26 5 1260 471 259 169 22 chr6 88529512 88529690 -60987347 + RLTR42-int LTR ERVK 1134 1337 -4185 5 1260 259 149 43 0 chr6 88529735 88529782 -60987255 + RLTR42-int LTR ERVK 1486 1534 -3988 5 1260 402 153 0 27 chr6 88529752 88529826 -60987211 + RLTR19-int LTR ERVK 896 967 -5170 5 1260 306 287 63 11 chr6 88529928 88530023 -60987014 + RLTR19-int LTR ERVK 1696 1795 -3727 5 1260 534 193 26 46 chr6 88530045 88530197 -60986840 + RLTR19-int LTR ERVK 1021 1169 -4968 5 1260 252 244 152 13 chr6 88530202 88530281 -60986756 + MTC-int LTR MaLR 482 571 -687 5 1260 660 223 147 142 chr6 88530261 88530433 -60986604 + MTC-int LTR MaLR 795 961 -297 5 1260 1148 82 0 0 chr6 88530433 88530579 -60986458 - B1_Mus2 SINE Alu 0 147 2 5 1260 660 223 147 142 chr6 88530579 88530766 -60986271 + MTC-int LTR MaLR 962 1156 -102 5 1260 2594 196 112 58 chr6 88531050 88531440 -60985597 + RLTR19-int LTR ERVK 1870 2597 -3540 5 1260 3225 48 134 0 chr6 88531440 88531859 -60985178 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1260 2594 183 121 70 chr6 88531859 88532329 -60984708 + RLTR19-int LTR ERVK 2598 3070 -3067 5 1260 1396 208 51 56 chr6 88532493 88532849 -60984188 + RLTR19-int LTR ERVK 4028 4381 -1756 5 1260 351 0 0 0 chr6 88533065 88533104 -60983933 + (TAA)n Simple_repeat Simple_repeat 3 41 0 6 1260 35 24 0 0 chr6 88533499 88533541 -60983496 + AT_rich Low_complexity Low_complexity 1 42 0 6 1260 620 67 0 37 chr6 88533712 88533820 -60983217 - L1_Mus3 LINE L1 -1 6637 6534 6 1260 1204 96 96 0 chr6 88533820 88533998 -60983039 + L1_Mus3 LINE L1 6033 6227 -411 6 1260 441 193 0 12 chr6 88534407 88534491 -60982546 + B3A SINE B2 1 83 -115 6 1260 562 308 164 25 chr6 88534629 88535225 -60981812 - HAL1 LINE L1 -769 1738 1060 6 1260 212 277 108 0 chr6 88535351 88535434 -60981603 + RSINE1 SINE B4 63 154 -11 6 1260 463 200 10 10 chr6 88535610 88535706 -60981331 - B4 SINE B4 -195 97 2 6 1260 1120 95 0 13 chr6 88535733 88535883 -60981154 + B1_Mus1 SINE Alu 1 148 0 6 1260 702 20 59 0 chr6 88535913 88536014 -60981023 + (GAAA)n Simple_repeat Simple_repeat 3 109 0 6 1260 792 199 0 7 chr6 88537566 88537713 -60979324 + B1_Mur1 SINE Alu 2 147 -2 7 1260 225 0 0 0 chr6 88537754 88537779 -60979258 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 7 1260 305 366 30 35 chr6 88539813 88540011 -60977026 + MIRb SINE MIR 5 201 -67 7 1260 279 239 12 179 chr6 88540323 88540496 -60976541 + B4A SINE B4 77 220 -72 7 1260 589 216 13 109 chr6 88540347 88540503 -60976534 + B1F1 SINE Alu 9 149 0 7 1260 528 16 0 0 chr6 88541833 88541894 -60975143 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 1260 202 275 0 0 chr6 88541894 88541934 -60975103 + C-rich Low_complexity Low_complexity 6 45 0 7 1260 215 267 0 167 chr6 88542503 88542575 -60974462 + B1F2 SINE Alu 1 60 -89 7 1260 285 296 111 0 chr6 88542643 88542724 -60974313 + RSINE1 SINE B4 73 162 -3 7 1260 529 244 204 0 chr6 88542802 88542978 -60974059 - B3 SINE B2 -1 215 4 7 1260 515 213 70 49 chr6 88543217 88543360 -60973677 - B1_Mur2 SINE Alu -2 147 2 8 1260 456 282 63 7 chr6 88543650 88543793 -60973244 - B3A SINE B2 0 198 48 8 1260 198 136 0 0 chr6 88545757 88545801 -60971236 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 8 1260 5212 180 25 36 chr6 88546301 88547550 -60969487 + L1_Mur2 LINE L1 892 2064 -3813 8 1260 315 0 0 0 chr6 88547550 88547585 -60969452 + (CCA)n Simple_repeat Simple_repeat 1 35 0 8 1260 5212 171 23 29 chr6 88547585 88547793 -60969244 + L1_Mur2 LINE L1 2065 2267 -3610 8 1260 315 0 0 0 chr6 88547939 88547974 -60969063 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1260 244 351 27 35 chr6 88548496 88548753 -60968284 + Lx9 LINE L1 5850 6104 -1540 8 1260 873 283 118 28 chr6 88548817 88549140 -60967897 + Lx9 LINE L1 6372 6723 -921 8 1260 283 259 11 80 chr6 88549420 88549508 -60967529 + ID4 SINE ID 2 83 0 8 1260 213 196 0 0 chr6 88549653 88549699 -60967338 + (TATATG)n Simple_repeat Simple_repeat 6 51 0 8 1260 666 303 82 16 chr6 88549725 88549980 -60967057 - B4A SINE B4 -4 288 17 8 1260 21 0 0 0 chr6 88550007 88550028 -60967009 + AT_rich Low_complexity Low_complexity 1 21 0 9 1260 711 241 27 38 chr6 88550120 88550305 -60966732 - B3A SINE B2 -14 184 2 9 1260 870 179 92 5 chr6 88550721 88550917 -60966120 + B3 SINE B2 1 213 -3 9 1260 307 202 128 0 chr6 88551246 88551340 -60965697 + BC1_Mm scRNA scRNA 9 114 -38 9 1260 4108 97 43 0 chr6 88551385 88551965 -60965072 + Lx3A LINE L1 6369 6973 -8 9 1260 276 154 0 0 chr6 88552776 88552828 -60964209 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1260 32 43 0 0 chr6 88553421 88553467 -60963570 + AT_rich Low_complexity Low_complexity 1 46 0 9 1260 3321 260 132 15 chr6 88553526 88553769 -60963268 + L1MA9 LINE L1 3889 4146 -1994 9 1260 467 256 144 44 chr6 88553769 88553937 -60963100 + B3A SINE B2 1 182 -16 9 1260 434 108 14 0 chr6 88553937 88554011 -60963026 + (CA)n Simple_repeat Simple_repeat 1 75 0 9 1260 467 256 144 44 chr6 88554011 88554022 -60963015 + B3A SINE B2 183 197 -1 9 1260 3321 261 132 29 chr6 88554022 88555487 -60961550 + L1MA9 LINE L1 4147 5798 -514 9 1260 376 319 81 23 chr6 88555487 88555747 -60961290 + B4 SINE B4 4 278 -14 1 1260 1194 263 132 67 chr6 88555747 88555780 -60961257 + L1MA9 LINE L1 5799 5813 -499 9 1260 583 94 21 0 chr6 88555780 88555876 -60961161 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 1260 1194 263 132 67 chr6 88555876 88556059 -60960978 + L1MA9 LINE L1 5814 6022 -290 9 1260 401 257 19 38 chr6 88556183 88556288 -60960749 - PB1D7 SINE Alu -6 114 12 1 1260 676 330 96 71 chr6 88556413 88556975 -60960062 - L1MEf LINE L1 -4466 1734 1149 1 1260 980 134 201 0 chr6 88556975 88557154 -60959883 + B3 SINE B2 2 216 0 1 1260 676 330 96 71 chr6 88557154 88557707 -60959330 - L1MEf LINE L1 -5052 1148 591 1 1260 234 264 0 40 chr6 88557722 88557797 -60959240 + CT-rich Low_complexity Low_complexity 3 74 0 1 1260 474 271 125 79 chr6 88559172 88559261 -60957776 + ORR1E LTR MaLR 7 114 -245 1 1260 3436 35 5 0 chr6 88559261 88559659 -60957378 + MTB LTR MaLR 1 400 0 1 1260 474 271 125 79 chr6 88559659 88559898 -60957139 + ORR1E LTR MaLR 115 350 -9 1 1260 21 82 0 0 chr6 88562011 88562060 -60954977 + AT_rich Low_complexity Low_complexity 1 49 0 1 1260 249 108 0 0 chr6 88562970 88563007 -60954030 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1260 912 265 99 8 chr6 88563035 88563297 -60953740 - B4A SINE B4 -6 286 1 1 1260 195 42 0 0 chr6 88564165 88564189 -60952848 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1260 202 0 29 57 chr6 88564648 88564683 -60952354 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1260 267 278 172 9 chr6 88564683 88564793 -60952244 - B1_Mus1 SINE Alu -18 130 2 1 1260 337 313 17 34 chr6 88565085 88565204 -60951833 - PB1D10 SINE Alu 0 117 1 1 1260 260 143 0 79 chr6 88565326 88565402 -60951635 + A-rich Low_complexity Low_complexity 2 71 0 1 1260 27 49 0 0 chr6 88566061 88566102 -60950935 + AT_rich Low_complexity Low_complexity 1 41 0 1 1260 194 222 33 100 chr6 88566275 88566365 -60950672 + L3 LINE CR1 2119 2202 -2287 1 1260 229 384 44 0 chr6 88566901 88567060 -60949977 + L3 LINE CR1 2745 2910 -1579 1 1260 362 236 0 0 chr6 88567315 88567387 -60949650 + ID4 SINE ID 5 76 -7 1 1260 575 179 9 0 chr6 88567637 88567743 -60949294 + B1_Mur2 SINE Alu 43 149 0 1 1260 21 0 0 0 chr6 88570959 88570980 -60946057 + AT_rich Low_complexity Low_complexity 1 21 0 1 1260 993 216 14 42 chr6 88570980 88571197 -60945840 - B3 SINE B2 -1 215 5 1 1260 590 256 23 0 chr6 88571722 88571855 -60945182 + B1_Mur2 SINE Alu 1 136 -13 1 1260 913 216 70 74 chr6 88571975 88572245 -60944792 - MER58B DNA MER1_type -26 315 47 1 1260 1307 80 57 0 chr6 88574735 88574899 -60942138 + B2_Mm2 SINE B2 2 175 -20 1 1260 249 33 0 0 chr6 88574899 88574929 -60942108 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1260 1307 80 57 0 chr6 88574929 88574940 -60942097 + B2_Mm2 SINE B2 176 186 -9 1 1260 703 134 154 23 chr6 88575026 88575156 -60941881 + B1_Mm SINE Alu 1 147 0 1 1260 244 154 0 19 chr6 88575156 88575209 -60941828 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 1 1260 216 0 0 0 chr6 88575388 88575412 -60941625 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1260 1112 80 0 0 chr6 88575412 88575549 -60941488 - B1_Mus2 SINE Alu -10 137 1 1 1260 250 207 0 0 chr6 88575757 88575815 -60941222 - 5S rRNA rRNA -50 71 14 1 1260 1055 156 142 5 chr6 88575832 88575935 -60941102 + Lx4A LINE L1 6818 6923 -135 1 1260 396 0 0 0 chr6 88575935 88575979 -60941058 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1260 1055 156 142 5 chr6 88575979 88576087 -60940950 + Lx4A LINE L1 6924 7057 -1 1 1260 563 218 0 9 chr6 88576183 88576294 -60940743 - PB1D9 SINE Alu -7 113 4 1 1260 366 173 623 40 chr6 88578345 88578475 -60938562 + URR1B DNA MER1_type 16 221 -4 1 1260 311 326 139 0 chr6 88578470 88578599 -60938438 - MLT1D LTR MaLR -104 401 255 1 1260 498 298 8 0 chr6 88578601 88578732 -60938305 + ID_B1 SINE B4 78 209 -15 1 1260 289 247 25 0 chr6 88578844 88578925 -60938112 - L1MB4 LINE L1 -7 6173 6091 1 1260 247 272 10 61 chr6 88578947 88579045 -60937992 + MLT1A0 LTR MaLR 1 93 -272 1 1260 241 206 13 52 chr6 88579187 88579264 -60937773 + MLT1A0 LTR MaLR 335 408 0 1 1260 335 279 165 16 chr6 88579268 88579538 -60937499 - L1MB4 LINE L1 -101 6079 5774 1 1260 921 144 4 0 chr6 88580057 88580321 -60936716 + (TG)n Simple_repeat Simple_repeat 1 265 0 1 1260 235 167 33 16 chr6 88580379 88580440 -60936597 + CT-rich Low_complexity Low_complexity 3 64 0 1 1260 310 259 27 31 chr6 88580559 88580670 -60936367 - MTE2a LTR MaLR -13 366 246 1 1260 2187 117 3 58 chr6 88582479 88582823 -60934214 - ORR1A2 LTR MaLR 0 327 3 1 1260 252 253 165 0 chr6 88582997 88583088 -60933949 + L2b LINE L2 3270 3375 0 1 1260 290 301 142 0 chr6 88583346 88583459 -60933578 + MLT1A1 LTR MaLR 1 129 -236 1 1260 344 206 0 0 chr6 88583564 88583627 -60933410 + MLT1A1 LTR MaLR 284 346 -62 1 1260 217 282 155 0 chr6 88583920 88584023 -60933014 - L2a LINE L2 -23 3403 3285 1 1260 1859 175 96 5 chr6 88584284 88584668 -60932369 + MTC LTR MaLR 3 421 0 1 1260 2242 173 29 57 chr6 88584705 88584778 -60932259 + MT2A LTR ERVL 1 73 -460 1 1260 516 16 0 0 chr6 88584778 88584839 -60932198 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1260 2242 173 29 57 chr6 88584839 88585242 -60931795 + MT2A LTR ERVL 74 463 -70 1 1260 1447 214 63 38 chr6 88585282 88585417 -60931620 - ORR1D1 LTR MaLR 0 374 244 1 1260 243 0 0 0 chr6 88585417 88585444 -60931593 + (CAGG)n Simple_repeat Simple_repeat 4 30 0 1 1260 1447 214 63 38 chr6 88585444 88585673 -60931364 - ORR1D1 LTR MaLR -131 243 3 1 1260 4230 214 70 42 chr6 88585683 88586950 -60930087 - ORR1D1-int LTR MaLR -27 1482 138 1 1260 216 0 0 0 chr6 88586953 88586977 -60930060 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1260 351 203 139 164 chr6 88587027 88587192 -60929845 - ORR1D1 LTR MaLR 0 374 214 1 1260 333 303 43 56 chr6 88587334 88587495 -60929542 - RLTR14 LTR ERV1 0 382 224 1 1260 5473 134 62 9 chr6 88587512 88588369 -60928668 - RMER19B LTR ERVK 0 902 1 1 1260 241 273 129 20 chr6 88589081 88589182 -60927855 - MLT1J1 LTR MaLR -327 117 6 1 1260 185 154 0 25 chr6 88589496 88589536 -60927501 + GA-rich Low_complexity Low_complexity 2 40 0 1 1260 183 129 0 0 chr6 88590359 88590390 -60926647 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 1 1260 313 216 110 3 chr6 88590424 88590548 -60926489 + MLT1C LTR MaLR 3 138 -252 1 1260 195 375 12 0 chr6 88591017 88591097 -60925940 - L3 LINE CR1 -1275 3214 3134 1 1260 976 148 7 0 chr6 88591211 88591360 -60925677 - B1_Mur4 SINE Alu 0 150 1 1 1260 245 240 101 30 chr6 88591797 88591896 -60925141 + MLT1C LTR MaLR 300 405 -3 1 1260 539 278 25 35 chr6 88592134 88592332 -60924705 - L1MC4 LINE L1 -376 7666 7471 1 1260 399 68 0 0 chr6 88592817 88592876 -60924161 + (CCTG)n Simple_repeat Simple_repeat 2 60 0 1 1260 606 316 138 10 chr6 88592893 88593190 -60923847 + LTR16A LTR ERVL 9 343 -108 1 1260 543 304 74 26 chr6 88593370 88593538 -60923499 + B3A SINE B2 1 180 -18 1 1260 254 29 29 0 chr6 88593538 88593573 -60923464 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1260 543 304 74 26 chr6 88593573 88593593 -60923444 + B3A SINE B2 181 198 0 1 1260 3279 67 27 25 chr6 88593617 88594064 -60922973 + L1Md_F2 LINE L1 6135 6582 0 1 1260 339 310 35 0 chr6 88594342 88594455 -60922582 + MLT1J LTR MaLR 119 235 -277 1 1260 244 194 32 0 chr6 88595155 88595217 -60921820 - B3 SINE B2 -8 208 145 1 1260 396 0 0 0 chr6 88595723 88595767 -60921270 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1260 251 300 25 0 chr6 88595768 88595848 -60921189 - ID4 SINE ID 0 83 2 1 1260 300 138 0 17 chr6 88596127 88596186 -60920851 + B1F SINE Alu 91 148 -1 1 1260 1160 168 0 5 chr6 88596504 88596702 -60920335 - B3 SINE B2 -7 209 13 1 1260 502 216 17 0 chr6 88598144 88598260 -60918777 - MER103 DNA DNA -1 165 48 1 1260 5290 173 72 17 chr6 88599471 88600447 -60916590 - RMER1A Other Other 0 1030 2 1 1260 734 334 177 10 chr6 88600573 88600959 -60916078 + MLT2B1 LTR ERVL 2 448 -72 1 1260 344 246 7 0 chr6 88601045 88601183 -60915854 + CT-rich Low_complexity Low_complexity 2 140 0 1 1260 244 155 103 0 chr6 88601188 88601246 -60915791 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 1 1260 1314 226 68 25 chr6 88601297 88601623 -60915414 + ORR1D2 LTR MaLR 23 362 -8 1 1260 236 253 40 13 chr6 88601780 88601856 -60915181 + L1MC4 LINE L1 1687 1764 -4451 1 1260 257 222 127 0 chr6 88601857 88601920 -60915117 - RMER1A Other Other -728 302 232 1 1260 25 31 0 0 chr6 88602876 88602908 -60914129 + AT_rich Low_complexity Low_complexity 1 32 0 1 1260 204 224 0 0 chr6 88603038 88603105 -60913932 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1260 206 277 0 19 chr6 88603157 88603260 -60913777 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 1 1260 223 328 24 32 chr6 88603277 88603400 -60913637 + (CATG)n Simple_repeat Simple_repeat 2 123 0 1 1260 322 336 54 7 chr6 88603418 88603565 -60913472 + L1MC4 LINE L1 2398 2551 -3664 1 1260 1089 226 148 9 chr6 88603802 88604119 -60912918 + ORR1D2 LTR MaLR 8 368 -2 1 1260 334 202 12 19 chr6 88604363 88604466 -60912571 - MTEb LTR MaLR -2 377 256 1 1261 447 290 70 90 chr6 88606366 88606567 -60910470 - B3A SINE B2 0 198 2 1 1261 1240 48 0 0 chr6 88606594 88606741 -60910296 + B1_Mus1 SINE Alu 2 148 0 1 1261 1128 276 14 17 chr6 88607671 88607962 -60909075 + B4A SINE B4 1 290 -2 1 1261 538 252 42 8 chr6 88608001 88608121 -60908916 + RSINE1 SINE B4 6 129 -36 1 1261 234 62 0 0 chr6 88608135 88608167 -60908870 + (CTCA)n Simple_repeat Simple_repeat 3 34 0 1 1261 559 216 0 17 chr6 88608296 88608414 -60908623 + B1_Mur1 SINE Alu 34 149 0 1 1261 807 226 101 6 chr6 88608458 88608636 -60908401 + B3 SINE B2 1 195 -21 1 1261 416 171 36 12 chr6 88608812 88608895 -60908142 + ORR1B1 LTR MaLR 1 85 -282 1 1261 1108 124 11 5 chr6 88608882 88609069 -60907968 + ORR1B1 LTR MaLR 207 394 0 1 1261 410 255 20 0 chr6 88609212 88609310 -60907727 + L1MEg LINE L1 1352 1451 -4964 1 1261 1032 206 59 0 chr6 88609418 88609622 -60907415 - B3 SINE B2 0 216 1 1 1261 21 0 0 0 chr6 88609675 88609696 -60907341 + AT_rich Low_complexity Low_complexity 1 21 0 1 1261 622 293 92 50 chr6 88610184 88610543 -60906494 + MLT1A LTR MaLR 1 374 0 1 1261 387 331 98 16 chr6 88610621 88610989 -60906048 + L1MEg LINE L1 1896 2293 -4107 1 1261 198 0 0 0 chr6 88610999 88611021 -60906016 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1 1261 287 347 14 0 chr6 88611024 88611171 -60905866 + L1MEg LINE L1 2317 2465 -3854 1 1261 1123 213 107 36 chr6 88611206 88611542 -60905495 + MTEa LTR MaLR 20 379 0 1 1261 4008 160 6 26 chr6 88611744 88612405 -60904632 + RMER1B Other Other 418 1065 -1 2 1261 1115 276 161 27 chr6 88612534 88613044 -60903993 + L1MEg LINE L1 2848 3404 -2915 1 1261 435 19 0 0 chr6 88613044 88613096 -60903941 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1261 1115 276 161 27 chr6 88613096 88613480 -60903557 + L1MEg LINE L1 3405 3861 -2458 1 1261 613 259 42 42 chr6 88613598 88613799 -60903238 + B3 SINE B2 3 204 -12 2 1261 495 0 0 0 chr6 88613799 88613854 -60903183 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1261 378 0 0 0 chr6 88613854 88613895 -60903142 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1261 613 259 42 42 chr6 88613895 88613906 -60903131 + B3 SINE B2 205 215 -1 2 1261 278 276 84 45 chr6 88613908 88614086 -60902951 + L1MEg LINE L1 3926 4110 -2209 1 1261 800 237 38 0 chr6 88614179 88614365 -60902672 + B3 SINE B2 22 214 -2 2 1261 287 321 68 58 chr6 88614652 88614930 -60902107 - MLT1E2 LTR MaLR -225 402 122 2 1261 346 271 96 32 chr6 88615052 88615208 -60901829 - RMER21B LTR ERV1 -357 485 320 2 1261 338 280 11 21 chr6 88615237 88615332 -60901705 - RMER21B LTR ERV1 -631 211 118 2 1261 1923 127 0 51 chr6 88615331 88615663 -60901374 + ORR1A3 LTR MaLR 12 326 0 2 1261 476 123 0 0 chr6 88615663 88615731 -60901306 - RMER21B LTR ERV1 -721 121 54 2 1261 229 232 56 42 chr6 88616129 88616201 -60900836 + MT2B LTR ERVL 190 262 -339 2 1261 509 53 118 0 chr6 88616156 88616232 -60900805 + B1_Mm SINE Alu 63 147 0 2 1261 454 240 0 0 chr6 88616250 88616346 -60900691 - MTEa LTR MaLR -282 97 2 2 1261 233 81 0 0 chr6 88616359 88616396 -60900641 + B1_Mus2 SINE Alu 96 132 -15 2 1261 643 269 54 16 chr6 88617065 88617250 -60899787 - B3A SINE B2 -5 193 2 2 1261 310 159 130 0 chr6 88617261 88617330 -60899707 + ORR1C2 LTR MaLR 307 384 0 2 1261 1960 169 52 14 chr6 88617360 88617726 -60899311 + ORR1C2 LTR MaLR 5 384 0 2 1261 244 318 0 0 chr6 88617743 88617809 -60899228 - MER2B DNA MER2_type -270 66 1 2 1261 772 259 78 32 chr6 88618041 88618385 -60898652 - L1MC1 LINE L1 -2145 5850 5460 2 1261 705 117 33 223 chr6 88618425 88618667 -60898370 + ORR1C2 LTR MaLR 1 196 -188 2 1261 670 216 159 24 chr6 88618670 88618960 -60898077 - L1MC1 LINE L1 -1543 4603 4275 2 1261 452 315 49 107 chr6 88618960 88619287 -60897750 - MTEa LTR MaLR -12 367 60 2 1261 308 300 0 12 chr6 88619301 88619382 -60897655 - MTEa LTR MaLR -292 87 8 2 1261 1289 82 10 0 chr6 88619494 88619690 -60897347 + MTB LTR MaLR 1 198 -202 2 1261 6073 12 1 0 chr6 88619690 88620382 -60896655 + L1Md_A LINE L1 215 907 -5817 2 1261 32215 4 0 0 chr6 88620379 88623949 -60893088 + L1Md_A LINE L1 2017 5586 -297 2 1261 9216 2 0 0 chr6 88623949 88624945 -60892092 + L1Md_A LINE L1 5587 6582 0 2 1261 1042 22 30 0 chr6 88625409 88625543 -60891494 + MTB LTR MaLR 263 400 0 2 1261 227 316 0 0 chr6 88625990 88626047 -60890990 - MTC-int LTR MaLR -424 834 778 2 1261 21 0 0 0 chr6 88626161 88626182 -60890855 + AT_rich Low_complexity Low_complexity 1 21 0 2 1261 510 17 0 0 chr6 88626280 88626339 -60890698 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1261 509 160 283 0 chr6 88626340 88626446 -60890591 - B1_Mus1 SINE Alu -12 136 1 2 1261 332 129 65 0 chr6 88626473 88626535 -60890502 - MTD LTR MaLR -344 75 10 2 1261 3857 202 74 67 chr6 88626540 88627630 -60889407 - MTD-int LTR MaLR 0 1258 161 2 1261 346 305 59 98 chr6 88628028 88628315 -60888722 + ORR1E LTR MaLR 18 293 -66 2 1261 263 70 0 65 chr6 88629275 88629321 -60887716 - ORR1D2 LTR MaLR 0 419 329 2 1261 2057 112 13 86 chr6 88629328 88629701 -60887336 + ORR1B1 LTR MaLR 41 386 -8 2 1261 473 208 80 51 chr6 88629698 88629835 -60887202 - ORR1D2 LTR MaLR -28 342 202 2 1261 329 269 56 0 chr6 88629861 88629969 -60887068 - ORR1D2 LTR MaLR -256 114 1 2 1261 486 0 0 0 chr6 88631013 88631067 -60885970 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1261 366 91 0 0 chr6 88631355 88631410 -60885627 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1261 233 311 168 63 chr6 88632588 88632904 -60884133 + ORR1E LTR MaLR 1 349 -10 2 1261 21 57 0 0 chr6 88634444 88634479 -60882558 + AT_rich Low_complexity Low_complexity 1 35 0 2 1261 296 313 104 20 chr6 88635090 88635292 -60881745 + L1M5 LINE L1 4479 4697 -1449 2 1261 428 265 143 18 chr6 88635569 88635833 -60881204 + L1M5 LINE L1 5314 5610 -569 2 1261 282 231 61 9 chr6 88636217 88636354 -60880683 + L1M5 LINE L1 5718 5867 -311 2 1261 513 194 30 10 chr6 88636648 88636747 -60880290 + B1_Mur1 SINE Alu 44 144 -5 2 1261 255 31 0 0 chr6 88637985 88638017 -60879020 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1261 406 210 119 10 chr6 88638611 88638712 -60878325 - PB1D10 SINE Alu 0 117 6 2 1261 230 262 23 91 chr6 88638634 88638722 -60878315 - MT2B2 LTR ERVL -343 241 160 2 1261 265 312 136 60 chr6 88638722 88639301 -60877736 + HAL1b LINE L1 1136 1758 -251 2 1261 32 43 0 0 chr6 88639458 88639504 -60877533 + AT_rich Low_complexity Low_complexity 1 46 0 2 1261 637 216 113 5 chr6 88639845 88640040 -60876997 + B3 SINE B2 1 216 0 2 1261 497 243 19 0 chr6 88640079 88640186 -60876851 - B3A SINE B2 -89 109 1 2 1261 4059 59 7 14 chr6 88640967 88641530 -60875507 - LTRIS2 LTR ERV1 -5 559 1 2 1261 732 54 0 0 chr6 88641891 88641984 -60875053 + (TC)n Simple_repeat Simple_repeat 1 93 0 2 1261 305 384 36 40 chr6 88642460 88642537 -60874500 - MER58B DNA MER1_type -93 248 171 2 1261 2993 125 124 6 chr6 88642537 88643060 -60873977 - RMER4B LTR ERVK 0 585 1 2 1261 305 384 36 40 chr6 88643060 88643229 -60873808 - MER58B DNA MER1_type -171 170 3 2 1261 821 228 11 32 chr6 88643517 88643703 -60873334 + B3A SINE B2 1 182 -16 2 1261 354 297 68 19 chr6 88643978 88644139 -60872898 + B3 SINE B2 48 216 0 2 1261 207 0 0 0 chr6 88644202 88644225 -60872812 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 2 1261 486 0 0 0 chr6 88644648 88644702 -60872335 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1261 702 283 71 49 chr6 88644857 88645165 -60871872 - MER2 DNA MER2_type -9 336 22 2 1261 385 80 353 29 chr6 88645262 88645364 -60871673 - B2_Mm2 SINE B2 -14 181 47 2 1261 1267 59 71 0 chr6 88645397 88645566 -60871471 - B2_Mm2 SINE B2 -14 181 1 2 1261 367 244 55 81 chr6 88645828 88646064 -60870973 + L1MC4 LINE L1 6783 7012 -1030 2 1261 835 206 113 5 chr6 88646187 88646382 -60870655 - B3 SINE B2 0 216 1 2 1261 1499 171 130 56 chr6 88646566 88646943 -60870094 + MTD LTR MaLR 13 417 -2 2 1261 301 233 14 0 chr6 88647051 88647124 -60869913 + L1MC4 LINE L1 7309 7382 -579 2 1261 473 245 111 57 chr6 88648081 88648523 -60868514 + MLT1B LTR MaLR 1 455 -12 2 1261 475 209 43 19 chr6 88649157 88649285 -60867752 + B1_Mur4 SINE Alu 1 125 -2 2 1261 569 243 40 29 chr6 88650016 88650190 -60866847 - B3A SINE B2 -18 180 5 2 1261 310 229 71 0 chr6 88650287 88650357 -60866680 - PB1D7 SINE Alu 0 120 46 2 1261 906 249 79 39 chr6 88650473 88650753 -60866284 - B4 SINE B4 0 292 2 2 1261 314 322 90 27 chr6 88650795 88650983 -60866054 + ORR1E LTR MaLR 1 200 -159 2 1261 1070 245 35 31 chr6 88651818 88652278 -60864759 - RMER15 LTR ERVL 0 575 27 2 1261 222 143 0 0 chr6 88652673 88652690 -60864347 + (CATA)n Simple_repeat Simple_repeat 2 18 0 2 1261 336 102 0 0 chr6 88652690 88652739 -60864298 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1261 222 143 0 0 chr6 88652739 88652763 -60864274 + (CATA)n Simple_repeat Simple_repeat 3 26 0 2 1261 546 216 68 0 chr6 88654183 88654345 -60862692 - L1ME4a LINE L1 0 6124 5952 2 1261 239 329 0 0 chr6 88654496 88654572 -60862465 + ID4_ SINE ID 5 80 -3 2 1261 30 0 0 0 chr6 88655198 88655228 -60861809 + AT_rich Low_complexity Low_complexity 1 30 0 2 1261 198 0 0 0 chr6 88655233 88655255 -60861782 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1261 24 32 0 0 chr6 88655945 88655976 -60861061 + AT_rich Low_complexity Low_complexity 1 31 0 2 1261 1311 224 150 50 chr6 88656564 88656699 -60860338 + MTD LTR MaLR 1 138 -281 2 1261 987 111 0 0 chr6 88656699 88656834 -60860203 + B1_Mus1 SINE Alu 2 136 -12 2 1261 180 77 0 0 chr6 88656835 88656861 -60860176 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1261 1311 224 150 50 chr6 88656861 88657104 -60859933 + MTD LTR MaLR 139 419 0 2 1261 197 314 28 28 chr6 88657420 88657528 -60859509 + L2c LINE L2 3280 3387 0 2 1261 22 0 0 0 chr6 88659509 88659531 -60857506 + AT_rich Low_complexity Low_complexity 1 22 0 2 1261 853 240 5 33 chr6 88659535 88659746 -60857291 + B3 SINE B2 1 205 -11 2 1261 1179 296 0 3 chr6 88660571 88660862 -60856175 - B4A SINE B4 -2 290 1 2 1261 326 364 46 5 chr6 88660932 88661128 -60855909 - MER2 DNA MER2_type 0 345 142 2 1261 270 287 138 106 chr6 88662406 88662718 -60854319 - MLT1J2 LTR MaLR -2 446 125 2 1261 182 105 26 0 chr6 88663345 88663383 -60853654 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 2 1261 366 325 104 15 chr6 88664196 88664455 -60852582 - MER2 DNA MER2_type -63 282 1 2 1261 347 290 101 14 chr6 88664940 88665118 -60851919 - MIR SINE MIR -23 245 54 2 1261 201 74 0 0 chr6 88665272 88665299 -60851738 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 2 1261 942 84 0 0 chr6 88665910 88666052 -60850985 + (TG)n Simple_repeat Simple_repeat 1 142 0 2 1261 207 0 0 0 chr6 88666052 88666074 -60850963 + (GA)n Simple_repeat Simple_repeat 1 23 0 2 1261 374 320 62 6 chr6 88666339 88666515 -60850522 - L1MA6 LINE L1 -31 6269 6084 2 1261 1055 95 7 26 chr6 88668695 88668846 -60848191 + B1_Mur3 SINE Alu 2 149 0 2 1261 549 42 5 0 chr6 88669179 88669262 -60847775 + B1_Mus2 SINE Alu 61 148 -2 2 1261 692 251 117 45 chr6 88669273 88669582 -60847455 + L1MD1 LINE L1 1602 1932 -4701 2 1261 23 54 0 0 chr6 88669670 88669707 -60847330 + AT_rich Low_complexity Low_complexity 1 37 0 2 1261 2094 285 97 24 chr6 88669815 88670964 -60846073 + L1MD1 LINE L1 4659 5899 -734 2 1261 675 252 35 88 chr6 88670964 88671190 -60845847 + B3 SINE B2 1 214 -2 2 1261 632 256 169 13 chr6 88671190 88671293 -60845744 + L1MD1 LINE L1 5900 6006 -627 2 1261 235 333 11 11 chr6 88671301 88671392 -60845645 - PB1D10 SINE Alu 0 117 27 2 1261 420 281 62 59 chr6 88671486 88671748 -60845289 + L1MD1 LINE L1 6235 6498 -135 2 1261 385 230 23 0 chr6 88671749 88671836 -60845201 + PB1D9 SINE Alu 32 120 0 2 1261 252 0 0 0 chr6 88673213 88673241 -60843796 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1261 2488 189 19 47 chr6 88673397 88673773 -60843264 + RMER5 LTR ERV1 17 386 -148 2 1261 216 0 0 0 chr6 88673773 88673797 -60843240 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1261 2488 189 19 47 chr6 88673797 88673953 -60843084 + RMER5 LTR ERV1 387 534 0 2 1261 29 70 0 0 chr6 88674366 88674423 -60842614 + GC_rich Low_complexity Low_complexity 1 57 0 2 1261 258 280 13 0 chr6 88674618 88674693 -60842344 + (CG)n Simple_repeat Simple_repeat 2 77 0 2 1261 203 23 67 22 chr6 88675535 88675580 -60841457 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1261 215 106 20 41 chr6 88675844 88675893 -60841144 + CT-rich Low_complexity Low_complexity 1 48 0 3 1261 204 40 0 0 chr6 88677342 88677367 -60839670 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1261 249 33 0 0 chr6 88678042 88678072 -60838965 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 3 1261 312 256 0 60 chr6 88678868 88678951 -60838086 + B4 SINE B4 67 144 -148 3 1261 4825 109 25 63 chr6 88679126 88679909 -60837128 + RMER6A LTR ERVK 1 754 -2 3 1261 542 212 34 20 chr6 88679937 88680086 -60836951 + RLTR31_Mur LTR ERVK 1 151 -402 3 1261 289 301 18 100 chr6 88680064 88680234 -60836803 + RLTR31_Mur LTR ERVK 398 553 0 3 1261 198 0 0 0 chr6 88682156 88682178 -60834859 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1261 24 0 0 0 chr6 88683499 88683523 -60833514 + GC_rich Low_complexity Low_complexity 1 24 0 3 1261 358 252 9 35 chr6 88683735 88683850 -60833187 + GA-rich Low_complexity Low_complexity 4 115 0 3 1261 1561 209 100 8 chr6 88683942 88684313 -60832724 + MTD LTR MaLR 1 405 -14 3 1261 758 306 176 15 chr6 88684590 88685013 -60832024 - L1MA5 LINE L1 -293 6007 5530 3 1261 486 0 0 0 chr6 88686105 88686159 -60830878 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1261 662 225 28 11 chr6 88686661 88686841 -60830196 - MLT1B LTR MaLR 0 390 208 3 1261 666 280 84 114 chr6 88688339 88689065 -60827972 + L1M4 LINE L1 3064 3759 -2387 3 1261 742 234 6 42 chr6 88689065 88689230 -60827807 + RSINE1 SINE B4 3 161 -4 3 1261 666 280 84 114 chr6 88689230 88689506 -60827531 + L1M4 LINE L1 3760 4036 -2110 3 1261 182 339 137 24 chr6 88690969 88691093 -60825944 - L2b LINE L2 -9 3366 3229 3 1261 465 127 0 0 chr6 88691463 88691542 -60825495 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1261 625 200 141 0 chr6 88691562 88691697 -60825340 - B3 SINE B2 -55 161 8 3 1261 365 250 89 0 chr6 88691980 88692092 -60824945 - CR1_Mam LINE CR1 -635 1569 1448 3 1261 411 252 168 81 chr6 88693152 88693325 -60823712 + B3A SINE B2 2 189 -6 3 1261 233 275 179 27 chr6 88694861 88694973 -60822064 - L1MA6 LINE L1 -48 6252 6124 3 1261 257 278 13 0 chr6 88695237 88695327 -60821710 - ID4 SINE ID -60 92 2 3 1261 25 0 0 0 chr6 88695429 88695454 -60821583 + AT_rich Low_complexity Low_complexity 1 25 0 3 1261 878 145 43 7 chr6 88695467 88695606 -60821431 + B1_Mur4 SINE Alu 2 145 -5 3 1261 1054 123 0 16 chr6 88695622 88695804 -60821233 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 3 1261 606 118 0 0 chr6 88695890 88695983 -60821054 + (GAGAA)n Simple_repeat Simple_repeat 1 93 0 3 1261 513 115 0 0 chr6 88696056 88696134 -60820903 + (GAGAA)n Simple_repeat Simple_repeat 1 78 0 3 1261 2953 157 81 20 chr6 88696554 88697095 -60819942 - RMER15 LTR ERVL -1 574 1 3 1261 193 310 57 11 chr6 88697566 88697654 -60819383 - MIR SINE MIR -140 122 31 3 1261 432 242 101 8 chr6 88701270 88701399 -60815638 + B1F SINE Alu 1 141 -8 3 1261 253 301 55 0 chr6 88701416 88701489 -60815548 + BC1_Mm scRNA scRNA 20 96 -56 3 1261 216 0 0 0 chr6 88701610 88701634 -60815403 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1261 1114 197 19 15 chr6 88701636 88701842 -60815195 - B3 SINE B2 -9 207 1 3 1261 2716 173 38 32 chr6 88701879 88702405 -60814632 - RLTR24 LTR ERV1 0 529 1 3 1261 240 35 0 0 chr6 88702924 88702953 -60814084 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 3 1261 328 284 28 47 chr6 88703648 88703755 -60813282 + MER117 DNA MER1_type 52 156 -41 3 1261 21 36 0 0 chr6 88704084 88704112 -60812925 + AT_rich Low_complexity Low_complexity 1 28 0 3 1261 324 0 0 0 chr6 88705373 88705409 -60811628 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1261 1013 165 134 0 chr6 88706141 88706335 -60810702 - URR1A DNA MER1_type -6 220 1 3 1261 634 198 12 0 chr6 88707417 88707579 -60809458 + (TCCA)n Simple_repeat Simple_repeat 1 164 0 3 1261 239 323 61 20 chr6 88708039 88708137 -60808900 + MIR SINE MIR 72 173 -89 3 1261 1908 196 31 13 chr6 88709181 88709564 -60807473 - MTC LTR MaLR -31 390 1 3 1261 211 324 40 0 chr6 88709748 88709822 -60807215 - MIRc SINE MIR -92 176 100 3 1261 399 89 0 0 chr6 88712495 88712551 -60804486 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1261 199 305 193 12 chr6 88713998 88714164 -60802873 + MIRb SINE MIR 65 260 -8 3 1261 311 0 26 0 chr6 88714954 88714993 -60802044 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1261 631 303 117 40 chr6 88715160 88715459 -60801578 - MTEa LTR MaLR -57 322 1 3 1261 239 381 50 8 chr6 88715545 88715664 -60801373 - RMER12 LTR ERVK -479 843 720 3 1261 274 301 27 0 chr6 88715726 88715799 -60801238 - ID4_ SINE ID -2 81 7 3 1261 2620 149 31 17 chr6 88718776 88719191 -60797846 - MTC LTR MaLR 0 421 1 3 1261 825 124 0 0 chr6 88719306 88719435 -60797602 + (TC)n Simple_repeat Simple_repeat 2 130 0 3 1261 686 153 135 15 chr6 88719457 88719590 -60797447 - B1_Mur4 SINE Alu -1 149 1 3 1261 183 111 56 0 chr6 88719617 88719653 -60797384 - MER5B DNA MER1_type -137 41 4 3 1261 259 356 11 32 chr6 88720135 88720228 -60796809 + BC1_Mm scRNA scRNA 9 99 -53 3 1261 235 296 24 24 chr6 88720231 88720314 -60796723 + GA-rich Low_complexity Low_complexity 2 84 0 3 1261 291 277 22 0 chr6 88721593 88721678 -60795359 - PB1D10 SINE Alu -51 98 10 3 1261 445 231 28 0 chr6 88722110 88722218 -60794819 - PB1D10 SINE Alu -5 112 2 3 1261 603 162 0 9 chr6 88722734 88722840 -60794197 + B1_Mur1 SINE Alu 43 147 -2 3 1261 221 154 75 19 chr6 88723228 88723281 -60793756 + MIRc SINE MIR 86 141 -127 3 1261 396 286 36 10 chr6 88723657 88723781 -60793256 - B1F1 SINE Alu -22 127 2 3 1261 398 320 90 0 chr6 88723837 88723959 -60793078 - RSINE1 SINE B4 -13 152 20 3 1261 261 182 218 20 chr6 88724570 88724671 -60792366 + MIRc SINE MIR 17 137 -131 3 1261 201 290 14 14 chr6 88725189 88725259 -60791778 + CT-rich Low_complexity Low_complexity 4 73 0 3 1261 1219 54 0 0 chr6 88725500 88725647 -60791390 + B1_Mus2 SINE Alu 1 147 0 3 1261 2468 215 77 107 chr6 88728544 88729422 -60787615 - RLTR42-int LTR ERVK -2656 2866 2015 3 1261 1296 93 5 42 chr6 88729422 88729613 -60787424 + B2_Mm2 SINE B2 1 184 -11 3 1261 2468 215 77 107 chr6 88729613 88729737 -60787300 - RLTR42-int LTR ERVK -3508 2014 1894 3 1261 198 0 0 0 chr6 88730955 88730977 -60786060 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1261 1293 27 0 0 chr6 88730978 88731125 -60785912 - B1_Mus1 SINE Alu 0 148 2 3 1261 918 224 40 5 chr6 88731329 88731553 -60785484 - RLTR42-int LTR ERVK -4241 1281 1050 3 1261 638 180 0 45 chr6 88732795 88732929 -60784108 + MT2B LTR ERVL 3 130 -403 3 1261 419 177 12 12 chr6 88732940 88733020 -60784017 + MT2B LTR ERVL 86 165 -368 3 1261 1826 140 61 0 chr6 88733025 88733354 -60783683 - ORR1B1 LTR MaLR -8 386 38 3 1261 795 256 67 116 chr6 88733311 88733575 -60783462 + MT2B LTR ERVL 275 540 -61 3 1261 243 0 0 0 chr6 88733575 88733602 -60783435 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1261 795 256 67 116 chr6 88733602 88733681 -60783356 + MT2B LTR ERVL 541 601 0 3 1261 198 71 0 0 chr6 88734052 88734080 -60782957 + (C)n Simple_repeat Simple_repeat 1 28 0 3 1261 268 295 0 83 chr6 88734524 88734620 -60782417 + PB1D10 SINE Alu 30 117 0 3 1262 213 176 70 42 chr6 88736688 88736759 -60780278 - MIRb SINE MIR -133 135 63 3 1262 387 141 0 0 chr6 88738146 88738210 -60778827 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1262 243 278 149 27 chr6 88738703 88738851 -60778186 - L2 LINE L2 -357 3062 2897 3 1262 405 0 0 0 chr6 88739125 88739170 -60777867 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 3 1262 254 254 32 48 chr6 88739491 88739615 -60777422 - MER74A LTR ERVL -138 420 299 3 1262 1043 216 36 33 chr6 88740106 88740476 -60776561 + RMER17C LTR ERVK 1 420 -331 3 1262 603 39 0 0 chr6 88740476 88740554 -60776483 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 1262 1043 167 77 42 chr6 88740554 88740734 -60776303 + RMER17C LTR ERVK 210 407 -3 3 1262 963 167 172 0 chr6 88741064 88741250 -60775787 + URR1B DNA MER1_type 1 218 -7 3 1262 642 13 0 0 chr6 88741850 88741925 -60775112 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1262 37 0 0 0 chr6 88743831 88743868 -60773169 + AT_rich Low_complexity Low_complexity 1 37 0 3 1262 847 176 0 7 chr6 88745590 88745739 -60771298 + B1_Mus1 SINE Alu 1 148 0 3 1262 348 291 25 69 chr6 88745600 88745759 -60771278 + B4A SINE B4 94 245 -47 3 1262 214 174 65 0 chr6 88745844 88745890 -60771147 + GA-rich Low_complexity Low_complexity 3 51 0 3 1262 587 248 0 40 chr6 88745891 88746042 -60770995 + ID_B1 SINE B4 76 220 -4 3 1262 285 284 0 0 chr6 88746081 88746148 -60770889 + ID4 SINE ID 8 74 -9 3 1262 189 0 0 0 chr6 88747961 88747982 -60769055 + (TTG)n Simple_repeat Simple_repeat 2 22 0 3 1262 1093 67 22 0 chr6 88747982 88748117 -60768920 - B1_Mus1 SINE Alu -9 139 2 3 1262 180 0 0 0 chr6 88748189 88748209 -60768828 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1262 231 245 38 0 chr6 88748290 88748343 -60768694 - ID4 SINE ID -6 77 23 3 1262 211 275 28 28 chr6 88748343 88748358 -60768679 - B4 SINE B4 -212 77 10 3 1262 468 0 0 0 chr6 88748396 88748448 -60768589 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1262 642 243 105 0 chr6 88748457 88748609 -60768428 - B3A SINE B2 -30 168 1 3 1262 284 225 114 21 chr6 88748669 88748771 -60768266 - L1MA5 LINE L1 -68 6232 6125 3 1262 392 319 9 0 chr6 88748845 88748961 -60768076 - PB1D7 SINE Alu -1 119 3 3 1262 468 291 0 15 chr6 88748996 88749132 -60767905 - B1_Mur1 SINE Alu -15 134 1 3 1262 237 176 20 0 chr6 88749608 88749659 -60767378 - PB1D7 SINE Alu -68 52 1 3 1262 1383 206 171 17 chr6 88749713 88750076 -60766961 + MTD LTR MaLR 2 405 -14 4 1262 275 302 10 40 chr6 88752117 88752217 -60764820 + PB1D10 SINE Alu 13 109 -8 4 1262 238 259 0 0 chr6 88752231 88752289 -60764748 + ID4_ SINE ID 19 76 -7 4 1262 207 0 0 0 chr6 88752700 88752723 -60764314 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1262 411 149 0 0 chr6 88752751 88752818 -60764219 + B1_Mur4 SINE Alu 28 94 -56 4 1262 631 318 86 47 chr6 88753018 88753427 -60763610 - MER74A LTR ERVL -129 429 5 4 1262 379 275 39 28 chr6 88754247 88754384 -60762653 + B1F1 SINE Alu 3 134 -13 4 1262 792 190 24 6 chr6 88754398 88754562 -60762475 + B3 SINE B2 6 172 -44 4 1262 613 198 90 4 chr6 88754567 88754695 -60762342 + B3A SINE B2 3 138 -78 4 1262 1191 182 9 39 chr6 88754695 88754924 -60762113 - URR1A DNA MER1_type 0 226 5 4 1262 516 296 71 61 chr6 88754924 88755007 -60762030 + B3 SINE B2 139 216 0 4 1262 283 300 11 32 chr6 88755033 88755126 -60761911 + BC1_Mm scRNA scRNA 1 91 -61 4 1262 818 272 55 126 chr6 88755492 88755896 -60761141 - MTE2a LTR MaLR 0 379 5 4 1262 731 140 35 49 chr6 88756183 88756326 -60760711 + B1_Mur3 SINE Alu 9 149 0 4 1262 226 253 53 0 chr6 88756563 88756638 -60760399 - RMER21A LTR ERV1 -484 463 385 4 1262 576 269 69 17 chr6 88756609 88756783 -60760254 + B3A SINE B2 16 198 0 4 1262 42 0 0 0 chr6 88756809 88756851 -60760186 + AT_rich Low_complexity Low_complexity 1 42 0 4 1262 234 62 0 0 chr6 88757579 88757611 -60759426 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 4 1262 193 250 0 0 chr6 88757866 88757910 -60759127 + MIR SINE MIR 77 120 -142 4 1262 321 315 0 0 chr6 88758206 88758295 -60758742 + C-rich Low_complexity Low_complexity 1 89 0 4 1262 483 18 0 0 chr6 88758315 88758371 -60758666 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1262 438 287 0 0 chr6 88758965 88759073 -60757964 + PB1D7 SINE Alu 13 120 0 4 1262 276 184 25 50 chr6 88759083 88759203 -60757834 + GA-rich Low_complexity Low_complexity 5 121 0 4 1262 188 35 35 0 chr6 88761706 88761735 -60755302 + (CGGGGG)n Simple_repeat Simple_repeat 1 30 0 4 1262 252 0 0 0 chr6 88761944 88761972 -60755065 + (TGGGGG)n Simple_repeat Simple_repeat 1 28 0 4 1262 309 343 29 0 chr6 88762953 88763058 -60753979 + PB1D10 SINE Alu 3 110 -7 4 1262 754 261 87 26 chr6 88763239 88763518 -60753519 + L1MA4 LINE L1 5640 5942 -358 4 1262 824 238 358 4 chr6 88764674 88764953 -60752084 - MTE2a LTR MaLR 0 379 2 4 1262 396 0 0 0 chr6 88766629 88766673 -60750364 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1262 225 0 0 0 chr6 88766673 88766697 -60750340 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1262 435 38 0 0 chr6 88766800 88766853 -60750184 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1262 212 206 192 0 chr6 88769008 88769081 -60747956 - MIR SINE MIR -62 146 60 4 1262 223 279 123 25 chr6 88770074 88770155 -60746882 - MIRb SINE MIR -133 135 47 4 1262 279 79 0 0 chr6 88770206 88770244 -60746793 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1262 243 116 14 55 chr6 88770261 88770334 -60746703 + (CAGAGA)n Simple_repeat Simple_repeat 2 71 0 4 1262 1808 108 77 3 chr6 88770338 88770635 -60746402 - ORR1A3 LTR MaLR -1 325 7 4 1262 640 0 25 0 chr6 88770635 88770715 -60746322 + (GA)n Simple_repeat Simple_repeat 1 82 0 4 1262 465 296 58 26 chr6 88771436 88771592 -60745445 - MLT1J LTR MaLR -314 198 38 4 1262 243 0 0 0 chr6 88772480 88772507 -60744530 + (GGA)n Simple_repeat Simple_repeat 1 27 0 4 1262 270 271 89 45 chr6 88772593 88772705 -60744332 - PB1D10 SINE Alu 0 117 1 4 1262 343 339 90 6 chr6 88772849 88773015 -60744022 + MER2 DNA MER2_type 157 336 -9 4 1262 209 306 27 40 chr6 88773984 88774059 -60742978 - MIRc SINE MIR -189 79 6 4 1262 228 347 70 6 chr6 88774591 88774762 -60742275 + L1MA4 LINE L1 5874 6055 -245 4 1262 207 0 0 0 chr6 88776035 88776058 -60740979 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1262 771 258 42 5 chr6 88779440 88779631 -60737406 - RMER5 LTR ERV1 -16 518 321 4 1262 538 197 137 0 chr6 88779641 88779758 -60737279 + ORR1D2 LTR MaLR 1 133 -237 4 1262 288 132 19 19 chr6 88779757 88779811 -60737226 + ORR1D2 LTR MaLR 317 370 0 4 1262 925 246 50 21 chr6 88779825 88780066 -60736971 - RMER5 LTR ERV1 -236 298 51 4 1262 21 36 0 0 chr6 88782153 88782181 -60734856 + AT_rich Low_complexity Low_complexity 1 28 0 4 1262 255 61 0 0 chr6 88782349 88782382 -60734655 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 1262 424 294 16 16 chr6 88782542 88782670 -60734367 + ID_B1 SINE B4 92 219 -5 4 1262 2168 105 71 106 chr6 88782674 88783010 -60734027 + ORR1B1 LTR MaLR 3 349 -45 4 1262 1167 83 60 22 chr6 88783010 88783195 -60733842 + B2_Mm1t SINE B2 1 192 -1 4 1262 2168 105 71 106 chr6 88783195 88783264 -60733773 + ORR1B1 LTR MaLR 350 394 0 4 1262 228 35 0 0 chr6 88783435 88783464 -60733573 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1262 301 270 165 30 chr6 88786891 88787065 -60729972 + MIRb SINE MIR 13 196 -72 4 1262 256 274 41 0 chr6 88787314 88787387 -60729650 - MIR SINE MIR -108 154 79 4 1262 213 286 76 51 chr6 88790135 88790253 -60726784 - L2a LINE L2 -280 3146 3026 4 1262 304 273 9 83 chr6 88790318 88790426 -60726611 - PB1D10 SINE Alu -13 104 5 4 1262 219 276 9 117 chr6 88790327 88790438 -60726599 - ID_B1 SINE B4 -48 176 78 4 1262 1097 246 129 19 chr6 88797428 88797800 -60719237 + MTD LTR MaLR 7 419 0 4 1262 186 43 0 0 chr6 88797884 88797907 -60719130 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 4 1262 278 323 71 0 chr6 88798033 88798132 -60718905 - PB1D10 SINE Alu -7 110 5 4 1262 449 266 26 0 chr6 88798169 88798282 -60718755 + PB1 SINE Alu 10 125 -2 4 1262 565 229 343 0 chr6 88798369 88798535 -60718502 + ID_B1 SINE B4 1 223 -1 4 1262 501 163 0 0 chr6 88799758 88799850 -60717187 + CT-rich Low_complexity Low_complexity 3 94 0 4 1262 498 205 295 0 chr6 88800242 88800408 -60716629 + B3 SINE B2 2 216 0 4 1262 549 241 42 110 chr6 88800458 88800649 -60716388 - MTEa LTR MaLR -1 378 201 4 1262 219 286 30 60 chr6 88800656 88800722 -60716315 + B4A SINE B4 32 95 -197 4 1262 633 285 15 51 chr6 88800722 88800862 -60716175 + B3A SINE B2 1 140 -58 4 1262 2871 50 103 0 chr6 88800862 88801221 -60715816 - MTA_Mm LTR MaLR 0 396 1 4 1262 633 285 15 51 chr6 88801221 88801276 -60715761 + B3A SINE B2 141 189 -9 4 1262 227 208 76 89 chr6 88801270 88801349 -60715688 - YREP_Mm Unknown Unknown -1486 326 249 4 1262 595 289 69 44 chr6 88801284 88801487 -60715550 + B4A SINE B4 83 290 -2 4 1262 558 0 0 0 chr6 88801500 88801562 -60715475 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1262 283 292 0 0 chr6 88801575 88801640 -60715397 - ID4 SINE ID -17 66 2 4 1262 416 329 43 37 chr6 88801648 88801812 -60715225 + HAL1 LINE L1 1583 1747 -760 4 1262 481 210 124 16 chr6 88801985 88802106 -60714931 + B1F SINE Alu 13 146 -3 4 1262 467 227 50 8 chr6 88802591 88802711 -60714326 + ID_B1 SINE B4 79 203 -21 4 1262 311 217 43 0 chr6 88802743 88802812 -60714225 + PB1D7 SINE Alu 47 118 -2 4 1262 396 103 0 0 chr6 88803469 88803527 -60713510 + (TATG)n Simple_repeat Simple_repeat 3 60 0 4 1262 180 0 0 0 chr6 88803527 88803546 -60713491 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1262 252 0 0 0 chr6 88803546 88803573 -60713464 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1262 309 136 0 0 chr6 88804174 88804240 -60712797 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 4 1262 1136 274 80 40 chr6 88804240 88804613 -60712424 + RMER15-int LTR ERVL 727 1114 -3885 4 1262 1067 189 245 20 chr6 88804773 88805075 -60711962 + MTD LTR MaLR 1 370 -49 4 1262 427 181 0 0 chr6 88805087 88805159 -60711878 + RMER15-int LTR ERVL 1339 1410 -3589 4 1262 531 0 0 0 chr6 88805670 88805729 -60711308 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1262 1509 236 21 32 chr6 88806248 88806621 -60710416 + MTEa LTR MaLR 1 369 -10 4 1262 727 119 182 0 chr6 88807111 88807237 -60709800 - B1_Mur4 SINE Alu -1 149 1 4 1262 350 269 14 3 chr6 88807925 88808018 -60709019 + PB1D7 SINE Alu 17 112 -8 4 1262 306 295 61 9 chr6 88808672 88808795 -60708242 + MIRc SINE MIR 55 175 -101 4 1262 351 241 23 11 chr6 88809462 88809550 -60707487 + PB1D10 SINE Alu 1 89 -28 4 1262 1171 249 51 53 chr6 88811144 88811500 -60705537 + ORR1E LTR MaLR 5 359 0 4 1262 774 261 64 5 chr6 88811630 88811834 -60705203 + B3 SINE B2 1 216 0 4 1262 218 310 17 0 chr6 88811993 88812051 -60704986 - L2b LINE L2 -13 3362 3304 4 1262 1039 159 134 26 chr6 88812224 88812418 -60704619 - B3 SINE B2 0 216 2 4 1262 1538 58 11 0 chr6 88812476 88812666 -60704371 + B2_Mm1a SINE B2 1 192 -1 4 1262 245 196 0 0 chr6 88812690 88812741 -60704296 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1262 1013 222 19 14 chr6 88813657 88813872 -60703165 + B3 SINE B2 1 216 0 4 1262 1540 37 32 5 chr6 88813963 88814152 -60702885 + B2_Mm2 SINE B2 1 194 -1 4 1262 216 0 0 0 chr6 88814250 88814274 -60702763 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1262 445 204 67 19 chr6 88814288 88814393 -60702644 - PB1D9 SINE Alu -1 119 10 4 1262 722 168 110 94 chr6 88814426 88814617 -60702420 - B3 SINE B2 0 216 23 4 1262 182 355 54 9 chr6 88815843 88815954 -60701083 + MIR3 SINE MIR 64 179 -29 4 1262 230 280 69 20 chr6 88816079 88816181 -60700856 - MIRc SINE MIR 0 268 162 4 1262 216 294 73 0 chr6 88817750 88817818 -60699219 - MER5A DNA MER1_type -91 98 26 4 1262 1238 61 0 0 chr6 88817820 88817967 -60699070 + B1_Mus1 SINE Alu 2 148 0 5 1262 1090 251 0 31 chr6 88818003 88818225 -60698812 + B3 SINE B2 1 215 -1 5 1262 714 274 26 0 chr6 88818283 88818436 -60698601 - RSINE1 SINE B4 -6 159 3 5 1262 188 352 84 19 chr6 88818563 88818670 -60698367 - MIRm SINE MIR 0 276 163 5 1262 881 163 0 16 chr6 88818713 88818963 -60698074 + (TATG)n Simple_repeat Simple_repeat 1 245 0 5 1262 824 124 0 43 chr6 88818977 88819163 -60697874 + (TATG)n Simple_repeat Simple_repeat 3 180 0 5 1262 244 158 0 0 chr6 88819716 88819754 -60697283 - MER5A DNA MER1_type -149 40 9 4 1262 624 251 70 32 chr6 88820051 88820236 -60696801 - B3 SINE B2 -24 192 1 5 1262 317 43 0 21 chr6 88820291 88820339 -60696698 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1262 262 280 37 9 chr6 88820341 88820449 -60696588 + (TG)n Simple_repeat Simple_repeat 1 111 0 5 1262 875 276 72 22 chr6 88820459 88820737 -60696300 - B4A SINE B4 0 292 1 5 1262 190 344 0 0 chr6 88820963 88821024 -60696013 - MIR3 SINE MIR -45 163 103 5 1262 214 262 33 77 chr6 88821536 88821627 -60695410 - L2c LINE L2 -41 3346 3260 5 1262 915 186 0 0 chr6 88822043 88822183 -60694854 + B1_Mur2 SINE Alu 1 140 -9 5 1262 459 0 0 0 chr6 88822183 88822234 -60694803 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 5 1262 186 43 0 0 chr6 88822686 88822709 -60694328 + (G)n Simple_repeat Simple_repeat 1 23 0 5 1262 235 0 0 54 chr6 88823130 88823167 -60693870 + (CCCCCA)n Simple_repeat Simple_repeat 4 38 0 5 1262 467 201 10 30 chr6 88823566 88823693 -60693344 - PB1D10 SINE Alu 0 149 11 5 1262 33 80 0 0 chr6 88824759 88824834 -60692203 + GC_rich Low_complexity Low_complexity 1 75 0 5 1262 232 265 28 35 chr6 88824912 88825053 -60691984 + (CGG)n Simple_repeat Simple_repeat 1 140 0 5 1262 651 171 365 6 chr6 88825395 88825554 -60691483 - B3 SINE B2 0 216 1 5 1262 478 223 122 16 chr6 88826059 88826182 -60690855 + B3A SINE B2 1 136 -62 5 1262 2224 241 85 89 chr6 88826220 88826928 -60690109 + MYSERV16_I-int LTR ERVK 2 756 -1570 5 1262 1238 48 7 0 chr6 88826928 88827074 -60689963 + B1_Mus2 SINE Alu 1 147 0 5 1262 2224 241 85 89 chr6 88827074 88827245 -60689792 + MYSERV16_I-int LTR ERVK 757 878 -1448 5 1262 266 385 35 6 chr6 88827245 88827415 -60689622 + RMER4A LTR ERVK 261 435 -31 5 1262 363 44 0 0 chr6 88827482 88827527 -60689510 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1262 866 245 38 19 chr6 88827544 88827756 -60689281 + B3 SINE B2 1 216 0 5 1262 1173 56 7 0 chr6 88827784 88827928 -60689109 + B1_Mus1 SINE Alu 3 147 -1 5 1262 1260 71 59 6 chr6 88827934 88828103 -60688934 - B2_Mm2 SINE B2 -15 180 3 5 1262 502 193 32 88 chr6 88828148 88828273 -60688764 - B1_Mur1 SINE Alu -29 120 3 5 1262 1278 168 192 113 chr6 88828771 88829161 -60687876 - MTC LTR MaLR 0 421 1 5 1262 775 107 205 0 chr6 88829275 88829397 -60687640 - B1_Mus1 SINE Alu 0 148 2 5 1262 1152 86 86 0 chr6 88829570 88829732 -60687305 + B2_Mm1t SINE B2 2 177 -16 5 1262 399 109 0 5 chr6 88829763 88829828 -60687209 + B2_Mm2 SINE B2 47 109 -107 5 1262 360 0 0 0 chr6 88829843 88829883 -60687154 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 1262 519 254 8 17 chr6 88829994 88830114 -60686923 + PB1D7 SINE Alu 1 119 -1 5 1262 677 158 0 17 chr6 88830116 88830221 -60686816 + PB1D9 SINE Alu 7 111 -9 5 1262 270 56 0 0 chr6 88830221 88830257 -60686780 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1262 1283 154 56 0 chr6 88830409 88830623 -60686414 + URR1A DNA MER1_type 1 226 0 5 1262 611 238 39 52 chr6 88830634 88830789 -60686248 + RSINE1 SINE B4 5 157 -8 5 1262 203 291 0 0 chr6 88830798 88830853 -60686184 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 5 1262 878 251 56 4 chr6 88830879 88831111 -60685926 - B4 SINE B4 -6 286 43 5 1262 923 136 14 14 chr6 88831128 88831270 -60685767 + B1_Mus2 SINE Alu 2 143 -4 5 1262 522 0 0 0 chr6 88831299 88831357 -60685680 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1262 434 226 83 28 chr6 88832454 88832563 -60684474 + PB1D9 SINE Alu 1 115 -5 5 1262 467 134 12 0 chr6 88833210 88833292 -60683745 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 1262 234 128 0 0 chr6 88834317 88834356 -60682681 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 5 1262 2517 53 78 0 chr6 88835319 88835640 -60681397 + ORR1A1 LTR MaLR 1 346 0 5 1262 183 243 0 86 chr6 88836217 88836298 -60680739 - MIRc SINE MIR -144 124 51 5 1262 237 65 0 0 chr6 88837094 88837125 -60679912 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 5 1262 388 221 75 83 chr6 88838312 88838405 -60678632 + MTD LTR MaLR 288 384 -35 5 1262 1531 68 16 5 chr6 88838405 88838597 -60678440 - B2_Mm2 SINE B2 0 195 2 5 1262 388 221 75 83 chr6 88838597 88838636 -60678401 + MTD LTR MaLR 385 419 0 5 1262 512 281 0 0 chr6 88840659 88840773 -60676264 + PB1D9 SINE Alu 5 118 -2 5 1262 308 263 40 0 chr6 88842575 88842651 -60674386 + ID4 SINE ID 3 81 -2 5 1262 306 218 20 147 chr6 88844086 88844131 -60672906 + B3A SINE B2 1 36 -162 5 1262 582 186 8 63 chr6 88844131 88844257 -60672780 - PB1D9 SINE Alu -1 119 1 5 1262 306 218 20 147 chr6 88844257 88844313 -60672724 + B3A SINE B2 37 89 -109 5 1262 288 143 46 0 chr6 88844409 88844470 -60672567 + PB1D9 SINE Alu 39 103 -46 5 1262 502 233 39 58 chr6 88844824 88844979 -60672058 + B3A SINE B2 46 197 -1 5 1262 788 206 215 11 chr6 88845055 88845232 -60671805 + B3 SINE B2 2 214 -2 5 1262 296 246 15 0 chr6 88845938 88846003 -60671034 + RSINE1 SINE B4 100 165 0 5 1262 198 0 0 0 chr6 88846028 88846050 -60670987 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1262 513 210 166 3 chr6 88846068 88846199 -60670838 + B3 SINE B2 34 181 -17 5 1262 866 54 0 52 chr6 88846194 88846330 -60670707 + B1_Mus1 SINE Alu 19 147 -1 5 1262 189 0 0 0 chr6 88847227 88847248 -60669789 + (G)n Simple_repeat Simple_repeat 1 21 0 5 1262 1247 61 0 0 chr6 88847875 88848023 -60669014 + B1_Mus1 SINE Alu 1 148 0 5 1262 306 134 0 0 chr6 88848023 88848090 -60668947 + (A)n Simple_repeat Simple_repeat 1 67 0 5 1262 515 241 22 8 chr6 88848101 88848235 -60668802 + B1F1 SINE Alu 1 136 -13 5 1262 643 197 121 0 chr6 88848238 88848370 -60668667 - B1_Mus1 SINE Alu 0 148 1 5 1262 220 274 0 0 chr6 88848397 88848459 -60668578 + ID4 SINE ID 11 72 -11 5 1262 1178 61 0 7 chr6 88849041 88849190 -60667847 - B1_Mus1 SINE Alu 0 148 1 5 1262 22 0 0 0 chr6 88849918 88849940 -60667097 + AT_rich Low_complexity Low_complexity 1 22 0 5 1262 288 70 0 0 chr6 88850704 88850747 -60666290 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1262 970 25 0 0 chr6 88850749 88850869 -60666168 - B1_Mus1 SINE Alu -12 136 17 5 1262 239 266 0 45 chr6 88850870 88850937 -60666100 - B1F SINE Alu -85 64 1 5 1262 241 279 0 71 chr6 88850937 88850965 -60666072 - B4 SINE B4 -210 82 61 5 1262 254 169 152 0 chr6 88850983 88851042 -60665995 + B2_Mm2 SINE B2 1 68 -127 5 1262 282 316 83 9 chr6 88851689 88851828 -60665209 + MIRb SINE MIR 31 184 -84 5 1262 483 226 113 27 chr6 88853020 88853170 -60663867 + ID_B1 SINE B4 59 221 -3 5 1262 877 132 18 42 chr6 88854504 88854670 -60662367 - B2_Mm2 SINE B2 -32 163 2 5 1262 216 207 96 75 chr6 88854735 88854829 -60662208 - MIRc SINE MIR -142 126 31 5 1262 393 266 0 60 chr6 88854847 88854963 -60662074 + PB1D10 SINE Alu 1 109 -8 5 1262 299 331 56 21 chr6 88855584 88855743 -60661294 + L2a LINE L2 2952 3112 -263 5 1262 387 253 0 0 chr6 88855891 88855970 -60661067 - MLT1J LTR MaLR -197 315 237 5 1262 196 264 38 0 chr6 88860138 88860191 -60656846 - MIR3 SINE MIR -27 181 127 5 1262 22 0 0 0 chr6 88862198 88862220 -60654817 + AT_rich Low_complexity Low_complexity 1 22 0 5 1262 972 251 19 5 chr6 88862724 88862932 -60654105 + B3 SINE B2 2 212 -4 5 1262 437 232 7 0 chr6 88863443 88863585 -60653452 + (TG)n Simple_repeat Simple_repeat 2 144 0 5 1262 448 253 48 72 chr6 88863715 88863881 -60653156 - B3A SINE B2 0 216 55 5 1262 2099 164 64 5 chr6 88863884 88863975 -60653062 + MTC LTR MaLR 6 99 -322 5 1262 1049 119 47 245 chr6 88863975 88864161 -60652876 - URR1B DNA MER1_type 0 225 92 5 1262 1415 53 12 0 chr6 88864161 88864332 -60652705 - B2_Mm1a SINE B2 -19 174 2 5 1262 1049 119 47 245 chr6 88864332 88864423 -60652614 - URR1B DNA MER1_type -134 91 3 5 1262 2099 164 64 5 chr6 88864423 88864724 -60652313 + MTC LTR MaLR 100 420 -1 5 1262 259 143 41 0 chr6 88864733 88864782 -60652255 - B2_Mm2 SINE B2 -143 52 2 5 1262 451 339 134 53 chr6 88865222 88865692 -60651345 + MLT1J LTR MaLR 5 512 0 5 1262 297 0 0 0 chr6 88866107 88866140 -60650897 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1262 372 22 0 0 chr6 88866215 88866260 -60650777 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1263 2562 92 3 0 chr6 88866974 88867300 -60649737 - ORR1A2 LTR MaLR 0 327 1 5 1263 265 352 29 58 chr6 88868874 88869082 -60647955 + MLT1K LTR MaLR 383 584 -11 5 1263 180 0 0 0 chr6 88869527 88869547 -60647490 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1263 1196 118 123 5 chr6 88870323 88870518 -60646519 + URR1A DNA MER1_type 5 222 -4 5 1263 283 374 65 15 chr6 88870561 88870762 -60646275 - MLT1K LTR MaLR -11 584 374 5 1263 680 115 0 15 chr6 88871447 88871579 -60645458 + (TCTCTG)n Simple_repeat Simple_repeat 6 135 0 5 1263 394 304 124 0 chr6 88871969 88872140 -60644897 + Charlie1 DNA MER1_type 58 242 -2539 5 1263 495 238 38 9 chr6 88872140 88872246 -60644791 + PB1D10 SINE Alu 2 110 -7 6 1263 394 304 124 0 chr6 88872246 88872268 -60644769 + Charlie1 DNA MER1_type 243 274 -2507 5 1263 748 255 19 6 chr6 88872269 88872427 -60644610 + RSINE1 SINE B4 2 161 -4 6 1263 231 280 28 14 chr6 88872437 88872582 -60644455 + ORR1B1-int LTR MaLR 613 759 -750 6 1263 422 172 37 92 chr6 88872463 88872572 -60644465 + MT2B LTR ERVL 155 257 -344 6 1263 894 129 0 21 chr6 88872478 88872620 -60644417 + B1_Mus1 SINE Alu 10 148 0 6 1263 372 256 49 126 chr6 88872572 88872643 -60644394 + B4 SINE B4 83 248 -44 6 1263 214 26 0 73 chr6 88872643 88872684 -60644353 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 1263 680 270 7 12 chr6 88872698 88872863 -60644174 + ID_B1 SINE B4 66 225 -67 6 1263 247 327 65 26 chr6 88872847 88873001 -60644036 + Charlie1 DNA MER1_type 2620 2779 -2 5 1263 334 187 126 11 chr6 88874430 88874548 -60642489 - B1F1 SINE Alu -1 148 28 6 1263 324 103 0 0 chr6 88874868 88874926 -60642111 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1263 342 368 56 21 chr6 88874968 88875254 -60641783 + L1ME4a LINE L1 5604 5899 -225 6 1263 439 265 94 7 chr6 88876249 88876402 -60640635 - L2a LINE L2 -6 3420 3204 6 1263 184 340 0 0 chr6 88876828 88876875 -60640162 + L3 LINE CR1 4343 4389 -100 6 1263 212 294 0 29 chr6 88877766 88877836 -60639201 + G-rich Low_complexity Low_complexity 5 72 0 6 1263 192 290 16 16 chr6 88878362 88878425 -60638612 - MIRc SINE MIR -122 146 84 6 1263 216 0 0 0 chr6 88880512 88880536 -60636501 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 6 1263 181 309 71 0 chr6 88880665 88880791 -60636246 + L2a LINE L2 2722 2856 -563 6 1263 243 317 73 0 chr6 88880862 88880985 -60636052 + L2a LINE L2 3004 3135 -291 6 1263 387 0 0 0 chr6 88881836 88881879 -60635158 + (CCTG)n Simple_repeat Simple_repeat 1 43 0 6 1263 553 330 68 81 chr6 88882977 88883362 -60633675 - MLT2D LTR ERVL -15 382 3 6 1263 345 318 138 48 chr6 88884370 88884681 -60632356 + MLT1G3 LTR MaLR 251 589 -6 6 1263 298 299 61 48 chr6 88885670 88885898 -60631139 - L1MD3 LINE L1 -282 7713 7483 6 1263 233 286 26 13 chr6 88885899 88885977 -60631060 + L1MD3 LINE L1 7836 7914 -81 6 1263 506 43 14 0 chr6 88886006 88886075 -60630962 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1263 474 202 33 25 chr6 88886427 88886549 -60630488 - Charlie7 DNA MER1_type -2176 436 314 6 1263 1140 250 129 3 chr6 88887331 88887664 -60629373 + MTEa LTR MaLR 1 375 -4 6 1263 235 284 20 137 chr6 88887770 88887793 -60629244 + MT2B LTR ERVL 150 160 -441 6 1263 418 280 40 0 chr6 88887793 88887893 -60629144 + B1_Mur2 SINE Alu 2 105 -44 6 1263 264 82 49 0 chr6 88888918 88888979 -60628058 + (TTTTTG)n Simple_repeat Simple_repeat 2 65 0 6 1263 262 337 70 47 chr6 88889326 88889497 -60627540 - MIRb SINE MIR -6 262 88 6 1263 374 206 86 72 chr6 88892107 88892232 -60624805 - MLT1B LTR MaLR -180 210 80 6 1263 324 0 0 0 chr6 88892232 88892268 -60624769 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1263 374 206 86 72 chr6 88892268 88892294 -60624743 - MLT1B LTR MaLR -311 79 57 6 1263 458 322 64 34 chr6 88892355 88892619 -60624418 + MamRep4096 DNA hAT? 43 314 -112 6 1263 216 0 0 0 chr6 88892931 88892955 -60624082 + (GGAGA)n Simple_repeat Simple_repeat 1 24 0 6 1263 402 21 0 0 chr6 88893112 88893159 -60623878 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1263 486 294 38 0 chr6 88893256 88893440 -60623597 + L1M5 LINE L1 5554 5744 -380 6 1263 327 295 63 39 chr6 88893889 88894016 -60623021 - RMER10B LTR ERVL 0 398 269 6 1263 28 0 0 0 chr6 88895010 88895038 -60621999 + AT_rich Low_complexity Low_complexity 1 28 0 6 1263 436 290 104 0 chr6 88895059 88895286 -60621751 - L1MB3 LINE L1 -29 6142 5883 6 1263 201 132 0 0 chr6 88895302 88895340 -60621697 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1263 824 141 11 33 chr6 88895369 88895552 -60621485 + (TATG)n Simple_repeat Simple_repeat 2 180 0 6 1263 764 204 4 0 chr6 88895539 88895766 -60621271 + (TG)n Simple_repeat Simple_repeat 1 227 0 6 1263 1024 244 25 12 chr6 88895766 88895970 -60621067 - B4A SINE B4 0 292 86 6 1263 387 0 0 0 chr6 88895970 88896013 -60621024 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1263 1024 244 25 12 chr6 88896013 88896049 -60620988 - B4A SINE B4 -207 85 49 6 1263 290 300 0 48 chr6 88896103 88896187 -60620850 + B4A SINE B4 213 292 0 6 1263 427 312 42 14 chr6 88896811 88896954 -60620083 + ID_B1 SINE B4 78 224 0 6 1263 419 320 30 60 chr6 88897048 88897214 -60619823 + RSINE1 SINE B4 3 163 -2 6 1263 1038 192 9 14 chr6 88897403 88897614 -60619423 + B3 SINE B2 1 210 -6 6 1263 1315 62 73 0 chr6 88897622 88897782 -60619255 + B2_Mm1t SINE B2 1 160 -33 6 1263 387 0 0 0 chr6 88897782 88897825 -60619212 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 6 1263 1315 62 73 0 chr6 88897825 88897843 -60619194 + B2_Mm1t SINE B2 161 191 -2 6 1263 333 0 0 0 chr6 88898017 88898054 -60618983 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1263 290 232 21 211 chr6 88898249 88898267 -60618770 + PB1D9 SINE Alu 5 118 -1 6 1263 653 198 0 16 chr6 88898267 88898390 -60618647 + ID_B1 SINE B4 104 224 0 6 1263 2926 35 0 0 chr6 88898711 88899057 -60617980 + ORR1A1 LTR MaLR 1 346 0 6 1263 252 335 119 4 chr6 88899097 88899340 -60617697 - L1M5 LINE L1 -640 5524 5254 6 1263 314 373 133 23 chr6 88899722 88900068 -60616969 + L1M5 LINE L1 4090 4473 -1673 6 1263 726 175 16 0 chr6 88900076 88900202 -60616835 + B1_Mur1 SINE Alu 3 130 -19 6 1263 231 256 0 37 chr6 88900704 88900785 -60616252 + L1M5 LINE L1 4961 5038 -1108 6 1263 653 287 45 0 chr6 88900842 88901044 -60615993 + ID_B1 SINE B4 1 211 -13 6 1263 655 245 128 20 chr6 88901109 88901359 -60615678 + B4A SINE B4 2 278 -14 6 1263 707 281 139 50 chr6 88901501 88901962 -60615075 - L1M5 LINE L1 -2300 3846 3345 6 1263 332 318 31 13 chr6 88901964 88902108 -60614929 - PB1D10 SINE Alu -4 144 5 6 1263 333 62 0 0 chr6 88902143 88902191 -60614846 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1263 579 256 44 0 chr6 88902201 88902338 -60614699 - B3A SINE B2 -55 143 1 6 1263 317 310 16 81 chr6 88902362 88902485 -60614552 - L1M5 LINE L1 -2912 3234 3120 6 1263 1206 279 193 96 chr6 88902485 88902874 -60614163 - L1M4b LINE L1 -1382 5624 5242 6 1263 456 302 0 0 chr6 88902874 88902993 -60614044 - PB1D7 SINE Alu -1 119 1 6 1263 1206 279 193 96 chr6 88902993 88903118 -60613919 - L1M4b LINE L1 -1765 5241 5121 6 1263 369 0 0 0 chr6 88903118 88903159 -60613878 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1263 1206 279 193 96 chr6 88903159 88904215 -60612822 - L1M4b LINE L1 -1886 5120 3900 6 1263 421 193 80 0 chr6 88904223 88904311 -60612726 + PB1D9 SINE Alu 26 120 0 6 1263 195 100 0 0 chr6 88904433 88904463 -60612574 + (TTG)n Simple_repeat Simple_repeat 2 31 0 6 1263 237 319 0 0 chr6 88904487 88904556 -60612481 - ID4_ SINE ID -13 70 2 6 1263 431 172 45 37 chr6 88904559 88904684 -60612353 - B1F SINE Alu 0 149 25 6 1263 315 276 49 7 chr6 88904692 88904834 -60612203 - L1M4b LINE L1 -4230 3104 2957 6 1263 354 277 106 0 chr6 88904982 88905076 -60611961 - RSINE1 SINE B4 -6 159 56 6 1263 229 270 59 67 chr6 88905081 88905200 -60611837 - RMER15 LTR ERVL -454 121 4 6 1263 440 283 74 56 chr6 88905306 88905643 -60611394 - L1M4b LINE L1 -5251 1653 1311 6 1263 278 338 153 4 chr6 88905721 88905956 -60611081 - L1M4b LINE L1 -6959 375 106 6 1263 589 316 99 17 chr6 88905956 88906188 -60610849 - MER119 DNA MER1_type -205 378 128 6 1263 706 164 25 0 chr6 88906303 88906425 -60610612 - B1F SINE Alu 0 149 25 6 1263 418 299 195 30 chr6 88907121 88907383 -60609654 - ORR1E LTR MaLR 0 359 55 6 1263 233 321 56 9 chr6 88907946 88908053 -60608984 + MLT1G1 LTR MaLR 1 112 -467 6 1263 700 316 73 50 chr6 88908060 88908403 -60608634 + ORR1E LTR MaLR 8 358 -1 6 1263 218 224 195 0 chr6 88908845 88908962 -60608075 + MIRc SINE MIR 17 154 -114 6 1263 304 261 96 55 chr6 88909155 88909301 -60607736 - MLT1B LTR MaLR -226 164 13 6 1263 328 291 10 47 chr6 88910247 88910391 -60606646 - MIR SINE MIR -59 203 73 6 1263 227 222 37 0 chr6 88911809 88911863 -60605174 + MLT1J1 LTR MaLR 73 128 -316 6 1263 226 224 0 20 chr6 88911931 88911981 -60605056 + CT-rich Low_complexity Low_complexity 6 54 0 6 1263 1209 240 87 7 chr6 88912165 88912475 -60604562 + Lx8 LINE L1 6410 6744 -729 6 1263 1206 128 17 22 chr6 88912954 88913185 -60603852 - Lx LINE L1 0 6654 6425 6 1263 294 300 77 11 chr6 88913266 88913448 -60603589 - L1M5 LINE L1 -2890 3256 3063 6 1263 219 36 0 0 chr6 88913541 88913569 -60603468 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 6 1263 372 128 0 0 chr6 88913764 88913842 -60603195 + (TCTG)n Simple_repeat Simple_repeat 4 81 0 6 1263 496 219 21 144 chr6 88913843 88914030 -60603007 - RSINE1 SINE B4 0 165 2 6 1263 323 287 82 6 chr6 88914033 88914191 -60602846 - B4A SINE B4 -67 225 56 6 1263 1314 81 32 0 chr6 88914596 88914782 -60602255 - B2_Mm1a SINE B2 0 193 2 6 1263 299 284 50 25 chr6 88914784 88914903 -60602134 - PB1 SINE Alu -1 126 5 6 1263 1074 208 19 0 chr6 88916241 88916453 -60600584 - B3 SINE B2 0 216 1 6 1263 400 280 84 53 chr6 88916947 88917173 -60599864 - RLTR42-int LTR ERVK -4134 1388 1156 6 1263 459 0 0 0 chr6 88917179 88917230 -60599807 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 6 1263 264 186 0 0 chr6 88917627 88917686 -60599351 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1263 468 51 0 0 chr6 88917920 88917979 -60599058 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 1263 689 224 73 0 chr6 88918072 88918237 -60598800 + ID_B1 SINE B4 16 192 -32 6 1263 851 53 9 0 chr6 88918761 88918874 -60598163 + (TG)n Simple_repeat Simple_repeat 2 115 0 6 1263 198 135 27 0 chr6 88922485 88922522 -60594515 + MIR SINE MIR 8 45 -217 6 1263 755 239 56 56 chr6 88923085 88923373 -60593664 + B4A SINE B4 1 288 -4 6 1263 429 328 76 40 chr6 88923935 88924211 -60592826 + MLT1H LTR MaLR 6 291 -258 6 1263 1844 197 52 3 chr6 88925090 88925477 -60591560 - MTD LTR MaLR -1 418 13 6 1263 687 340 0 5 chr6 88925482 88925695 -60591342 + B4 SINE B4 81 292 0 6 1263 300 148 0 0 chr6 88925701 88925762 -60591275 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1263 237 65 0 0 chr6 88927224 88927255 -60589782 + (CCCCCA)n Simple_repeat Simple_repeat 1 31 0 7 1263 248 357 61 43 chr6 88927616 88927780 -60589257 + MIR SINE MIR 73 239 -23 7 1263 261 83 0 0 chr6 88927919 88927955 -60589082 + (AGGGGG)n Simple_repeat Simple_repeat 4 39 0 7 1263 370 322 105 113 chr6 88928694 88928960 -60588077 - B4 SINE B4 -4 288 25 7 1263 252 0 0 0 chr6 88929229 88929257 -60587780 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1263 360 0 0 0 chr6 88929750 88929790 -60587247 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1263 396 0 0 0 chr6 88930081 88930125 -60586912 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1263 271 266 51 0 chr6 88930740 88930819 -60586218 - ID4 SINE ID 0 83 1 7 1263 330 182 0 0 chr6 88930832 88930898 -60586139 + (TTTA)n Simple_repeat Simple_repeat 1 66 0 7 1263 671 270 26 0 chr6 88930901 88931053 -60585984 - RSINE1 SINE B4 -8 157 2 7 1263 528 16 0 0 chr6 88931080 88931141 -60585896 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1263 503 237 57 64 chr6 88931143 88931283 -60585754 - RSINE1 SINE B4 -25 140 2 7 1263 328 280 44 29 chr6 88931814 88931950 -60585087 + MIR3 SINE MIR 58 195 -13 7 1263 591 53 0 0 chr6 88931976 88932051 -60584986 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 7 1263 809 179 126 16 chr6 88933569 88933751 -60583286 + B3 SINE B2 3 204 -12 7 1263 23 0 0 0 chr6 88934670 88934693 -60582344 + AT_rich Low_complexity Low_complexity 1 23 0 7 1263 205 29 59 0 chr6 88934718 88934752 -60582285 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 7 1263 718 161 153 0 chr6 88934761 88934885 -60582152 - B1_Mur3 SINE Alu -6 143 1 7 1263 505 332 82 9 chr6 88936475 88936706 -60580331 - MLT1D LTR MaLR -257 248 1 7 1263 1960 100 56 12 chr6 88937825 88938149 -60578888 + ORR1A1 LTR MaLR 1 338 -8 7 1263 1431 227 86 51 chr6 88938175 88938662 -60578375 - RLTR11A2 LTR ERVK -18 509 6 7 1263 298 186 0 79 chr6 88938943 88939019 -60578018 - MLT1A1 LTR MaLR -1 407 338 7 1263 985 242 103 18 chr6 88939022 88939363 -60577674 + ORR1D2 LTR MaLR 1 370 0 7 1263 2838 235 68 47 chr6 88939364 88939408 -60577629 + ORR1D2-int LTR MaLR 2 39 -1331 7 1263 351 0 0 0 chr6 88939408 88939447 -60577590 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1263 237 65 0 0 chr6 88939447 88939478 -60577559 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1263 2838 235 68 47 chr6 88939478 88939497 -60577540 + ORR1D2-int LTR MaLR 40 60 -1310 7 1263 1278 105 11 0 chr6 88939497 88939687 -60577350 + B2_Mm1t SINE B2 2 193 0 7 1263 2838 235 68 47 chr6 88939687 88940447 -60576590 + ORR1D2-int LTR MaLR 61 843 -527 7 1263 331 209 11 69 chr6 88940444 88940550 -60576487 + ORR1D2-int LTR MaLR 926 1001 -369 7 1263 727 253 33 127 chr6 88940831 88941011 -60576026 + ORR1D2-int LTR MaLR 1004 1323 -257 7 1263 890 70 55 0 chr6 88941011 88941139 -60575898 + B1_Mus2 SINE Alu 13 147 0 7 1263 727 253 33 127 chr6 88941139 88941258 -60575779 + ORR1D2-int LTR MaLR 1324 1538 -42 7 1263 1478 148 21 70 chr6 88941415 88941576 -60575461 + RMER17C LTR ERVK 45 195 -215 7 1263 1277 78 0 6 chr6 88941576 88941756 -60575281 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 7 1263 1478 148 21 70 chr6 88941756 88941979 -60575058 + RMER17C LTR ERVK 196 409 -1 7 1263 839 270 43 49 chr6 88941994 88942298 -60574739 + RLTR26 LTR ERVK 129 430 -212 7 1263 582 247 75 43 chr6 88942791 88942846 -60574191 + B4 SINE B4 34 85 -207 7 1263 299 0 73 0 chr6 88942846 88942887 -60574150 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1263 582 247 75 43 chr6 88942887 88943015 -60574022 + B4 SINE B4 86 222 -70 7 1263 1005 209 0 16 chr6 88943015 88943209 -60573828 + B3 SINE B2 2 192 -24 7 1263 249 57 0 0 chr6 88943214 88943249 -60573788 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 7 1263 247 271 29 0 chr6 88943262 88943332 -60573705 + ID4_ SINE ID 4 75 -8 7 1263 217 271 0 0 chr6 88943422 88943470 -60573567 - MIRc SINE MIR -140 128 81 7 1263 22 0 0 0 chr6 88943777 88943799 -60573238 + AT_rich Low_complexity Low_complexity 1 22 0 7 1263 848 233 64 0 chr6 88944824 88945026 -60572011 - B3 SINE B2 0 216 2 7 1263 508 65 0 25 chr6 88945428 88945474 -60571563 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 7 1263 1014 117 0 32 chr6 88945474 88945660 -60571377 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1263 508 65 0 25 chr6 88945660 88945692 -60571345 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 7 1263 1350 34 6 16 chr6 88945693 88945875 -60571162 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1263 866 89 0 0 chr6 88945879 88946003 -60571034 - B1_Mus1 SINE Alu -5 143 20 7 1263 288 130 0 0 chr6 88946176 88946222 -60570815 + (CACCAT)n Simple_repeat Simple_repeat 5 50 0 7 1263 232 333 71 0 chr6 88946232 88946316 -60570721 - PB1D10 SINE Alu -27 90 1 7 1263 244 254 0 0 chr6 88946427 88946494 -60570543 - ID4 SINE ID -11 72 6 7 1263 957 83 0 0 chr6 88947285 88947417 -60569620 + (TCTA)n Simple_repeat Simple_repeat 3 134 0 7 1263 307 273 19 45 chr6 88947639 88947766 -60569271 - PB1 SINE Alu -7 142 11 7 1263 441 0 0 0 chr6 88947838 88947887 -60569150 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1263 1120 50 0 0 chr6 88947888 88948028 -60569009 - B1_Mus2 SINE Alu -6 141 2 7 1263 1140 211 24 89 chr6 88948156 88948234 -60568803 - MTD LTR MaLR -147 272 202 7 1263 619 175 43 14 chr6 88948234 88948373 -60568664 - B1_Mur1 SINE Alu -2 147 5 7 1263 1140 211 24 89 chr6 88948373 88948585 -60568452 - MTD LTR MaLR -218 201 1 7 1263 666 277 136 5 chr6 88948585 88948803 -60568234 + MT2A LTR ERVL 287 533 0 7 1263 564 277 88 0 chr6 88949596 88949744 -60567293 + RSINE1 SINE B4 5 165 0 7 1263 660 235 104 12 chr6 88949763 88949927 -60567110 + B3 SINE B2 2 180 -36 7 1263 212 59 0 29 chr6 88950950 88950985 -60566052 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1263 1231 21 0 0 chr6 88950985 88951130 -60565907 - B1_Mus2 SINE Alu -2 145 1 7 1263 26 30 0 0 chr6 88951210 88951243 -60565794 + AT_rich Low_complexity Low_complexity 1 33 0 7 1263 411 335 13 26 chr6 88951274 88951430 -60565607 - RSINE1 SINE B4 -8 157 4 7 1263 743 201 0 7 chr6 88951482 88951627 -60565410 + B1_Mur1 SINE Alu 1 144 -5 7 1263 422 333 0 32 chr6 88952877 88953063 -60563974 + (CATA)n Simple_repeat Simple_repeat 1 180 0 7 1263 227 361 24 32 chr6 88953093 88953219 -60563818 - RMER12 LTR ERVK -465 857 733 7 1263 209 171 0 0 chr6 88953616 88953651 -60563386 + C-rich Low_complexity Low_complexity 1 35 0 7 1263 231 290 43 0 chr6 88953871 88953940 -60563097 - Tigger7 DNA MER2_type -17 2474 2403 7 1263 533 269 177 5 chr6 88954477 88954675 -60562362 - Tigger7 DNA MER2_type -2227 264 33 7 1263 281 268 55 48 chr6 88954810 88954955 -60562082 - L1M5 LINE L1 -2145 4001 3856 7 1263 1070 106 16 32 chr6 88955411 88955572 -60561465 + B2_Mm2 SINE B2 5 162 -33 7 1263 180 0 0 0 chr6 88955572 88955592 -60561445 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 1263 1070 106 16 32 chr6 88955592 88955615 -60561422 + B2_Mm2 SINE B2 163 185 -10 7 1263 261 280 65 41 chr6 88955953 88956076 -60560961 + MLT1A1 LTR MaLR 271 396 -12 7 1263 660 276 75 39 chr6 88956468 88956975 -60560062 + L1M5 LINE L1 2739 3258 -2888 7 1263 213 132 0 0 chr6 88957495 88957533 -60559504 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1263 378 61 0 0 chr6 88957531 88957580 -60559457 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 7 1263 180 0 0 0 chr6 88957830 88957850 -60559187 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 7 1263 235 306 92 59 chr6 88957927 88958080 -60558957 - L2b LINE L2 -298 3077 2920 7 1263 810 131 21 21 chr6 88959239 88959380 -60557657 + B1_Mur3 SINE Alu 1 141 -8 7 1263 198 0 0 0 chr6 88959381 88959403 -60557634 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 7 1263 183 156 0 0 chr6 88959936 88959968 -60557069 + GA-rich Low_complexity Low_complexity 4 35 0 7 1263 966 166 18 0 chr6 88962229 88962398 -60554639 - B3 SINE B2 -6 210 39 7 1263 195 204 0 0 chr6 88962405 88962449 -60554588 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1263 624 231 0 0 chr6 88962539 88962660 -60554377 - B4A SINE B4 -155 137 17 7 1263 185 0 40 0 chr6 88963007 88963032 -60554005 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1263 246 275 98 11 chr6 88963726 88963818 -60553219 + MIR SINE MIR 45 144 -64 7 1263 457 234 54 0 chr6 88965148 88965259 -60551778 - PB1D10 SINE Alu 0 117 1 7 1263 945 126 56 71 chr6 88965302 88965499 -60551538 - B2_Mm2 SINE B2 0 195 2 7 1263 301 270 0 91 chr6 88965656 88965668 -60551369 + ID SINE ID 70 71 -153 7 1263 402 237 5 51 chr6 88965668 88965792 -60551245 + B1F SINE Alu 1 120 0 7 1263 257 158 35 0 chr6 88965859 88965916 -60551121 + CT-rich Low_complexity Low_complexity 1 59 0 7 1263 481 362 74 24 chr6 88965923 88966384 -60550653 - L1M4 LINE L1 -1221 4925 4442 7 1263 296 325 0 9 chr6 88966427 88966542 -60550495 - PB1D9 SINE Alu -1 119 6 7 1263 559 288 60 10 chr6 88966574 88966774 -60550263 - B3 SINE B2 -4 212 3 7 1263 251 213 0 13 chr6 88966794 88966870 -60550167 + CT-rich Low_complexity Low_complexity 3 77 0 7 1263 234 62 0 0 chr6 88966870 88966902 -60550135 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 7 1263 682 208 46 0 chr6 88966923 88967053 -60549984 - RSINE1 SINE B4 -19 146 11 7 1263 395 248 176 0 chr6 88967068 88967193 -60549844 - B1_Mur1 SINE Alu 0 149 3 7 1263 378 0 0 0 chr6 88967542 88967584 -60549453 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1263 279 270 11 33 chr6 88967584 88967676 -60549361 - PB1D10 SINE Alu -19 98 9 7 1263 256 234 47 0 chr6 88967732 88967796 -60549241 - B1F1 SINE Alu -42 107 41 7 1263 231 296 28 0 chr6 88967820 88967891 -60549146 - L1MC LINE L1 -1991 4155 4083 7 1263 1924 137 158 11 chr6 88968009 88968364 -60548673 + MTC LTR MaLR 7 413 -8 7 1263 638 205 8 0 chr6 88968379 88968496 -60548541 - B1_Mur1 SINE Alu -31 118 1 7 1263 489 256 21 35 chr6 88968553 88968695 -60548342 + B1F SINE Alu 10 149 0 8 1263 839 207 15 54 chr6 88969689 88969893 -60547144 - B3A SINE B2 0 198 3 8 1263 407 336 132 27 chr6 88971108 88971548 -60545489 - LTR33A LTR ERVL -27 493 8 8 1263 436 272 10 0 chr6 88972441 88972544 -60544493 + PB1D7 SINE Alu 14 117 -3 8 1263 187 273 0 18 chr6 88972550 88972606 -60544431 - MIR SINE MIR -81 127 73 8 1263 198 0 0 0 chr6 88973668 88973690 -60543347 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1263 257 309 26 35 chr6 88975670 88975784 -60541253 - LTR85a LTR Gypsy? -544 158 46 8 1263 423 342 126 25 chr6 88975842 88976160 -60540877 - MLT1K LTR MaLR -51 544 195 8 1263 2103 127 23 9 chr6 88977507 88977856 -60539181 - ORR1B1 LTR MaLR 0 394 41 8 1263 341 314 99 84 chr6 88978322 88978666 -60538371 + ORR1D2 LTR MaLR 5 353 -17 8 1263 289 301 31 31 chr6 88979678 88979805 -60537232 + ORR1E LTR MaLR 29 155 -204 8 1263 1914 109 56 0 chr6 88979809 88980113 -60536924 - ORR1A4 LTR MaLR -8 321 1 8 1263 279 263 20 29 chr6 88980228 88980330 -60536707 + ORR1E LTR MaLR 278 378 -1 8 1263 1343 235 128 6 chr6 88980681 88981041 -60535996 - MTD LTR MaLR -15 404 1 8 1263 2150 97 21 59 chr6 88981534 88981874 -60535163 + ORR1A2 LTR MaLR 1 327 0 8 1263 351 311 38 73 chr6 88982085 88982277 -60534760 + Lx8 LINE L1 7149 7462 -182 8 1263 262 196 18 18 chr6 88983299 88983356 -60533681 - MER5A1 DNA MER1_type -27 139 83 8 1263 225 178 0 0 chr6 88985220 88985265 -60531772 + GA-rich Low_complexity Low_complexity 2 46 0 8 1263 207 139 0 0 chr6 88985354 88985390 -60531647 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 8 1263 242 276 40 0 chr6 88987395 88987471 -60529566 - ID4 SINE ID -4 79 1 8 1263 393 339 17 22 chr6 88988155 88988336 -60528701 - L1ME1 LINE L1 -18 6161 5982 8 1263 253 221 31 138 chr6 88989202 88989322 -60527715 - ID4_ SINE ID -27 125 9 8 1263 495 222 29 15 chr6 88989337 88989474 -60527563 - B1F SINE Alu -10 139 1 8 1263 301 288 41 41 chr6 88990634 88990757 -60526280 + L1MB5 LINE L1 4876 4998 -1148 8 1263 744 189 7 40 chr6 88990877 88991026 -60526011 - B1_Mur2 SINE Alu -5 144 1 8 1263 2188 235 61 38 chr6 88991063 88991739 -60525298 + RMER1B Other Other 1 517 -549 8 1263 385 285 73 2 chr6 88991757 88991862 -60525175 + L1MB5 LINE L1 5667 5794 -380 8 1263 1514 32 0 16 chr6 88991862 88992051 -60524986 - B2_Mm1a SINE B2 -6 187 2 8 1263 385 317 228 10 chr6 88992051 88992364 -60524673 + L1MB5 LINE L1 5795 6173 -1 8 1263 444 77 0 0 chr6 88993689 88993754 -60523283 + (TG)n Simple_repeat Simple_repeat 1 65 0 8 1263 462 273 20 47 chr6 88993756 88993906 -60523131 - B4A SINE B4 -18 274 129 8 1263 642 231 8 0 chr6 88994101 88994231 -60522806 + ID_B1 SINE B4 94 224 0 8 1263 213 39 0 0 chr6 88994278 88994304 -60522733 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 8 1263 1165 48 7 0 chr6 88994448 88994594 -60522443 - B1_Mus2 SINE Alu 0 147 1 8 1263 702 250 114 9 chr6 88994695 88994905 -60522132 - ORR1D2 LTR MaLR 0 370 139 8 1263 1080 181 0 0 chr6 88994919 88995101 -60521936 - URR1B DNA MER1_type -43 182 1 8 1263 404 254 183 8 chr6 88995101 88995231 -60521806 - ORR1D2 LTR MaLR -202 157 5 8 1263 366 366 72 6 chr6 88995930 88996265 -60520772 - L1M5 LINE L1 -999 5147 4791 8 1263 1082 211 5 9 chr6 88996602 88996813 -60520224 - B3 SINE B2 -6 210 1 8 1263 334 150 67 0 chr6 88996818 88996878 -60520159 - B4 SINE B4 -203 89 26 8 1264 552 179 0 0 chr6 88998709 88998821 -60518216 + (TCCA)n Simple_repeat Simple_repeat 4 115 0 8 1264 192 321 134 12 chr6 88998835 88998917 -60518120 - L2c LINE L2 -16 3371 3280 8 1264 296 48 24 0 chr6 88999590 88999632 -60517405 + (GGGA)n Simple_repeat Simple_repeat 1 43 0 8 1264 360 0 0 0 chr6 88999955 88999995 -60517042 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1264 461 206 133 30 chr6 89000007 89000122 -60516915 + B4 SINE B4 3 132 -160 1 1264 327 25 0 0 chr6 89000122 89000162 -60516875 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1264 461 206 133 30 chr6 89000162 89000181 -60516856 + B4 SINE B4 133 151 -141 1 1264 2119 126 9 25 chr6 89000181 89000507 -60516530 + ORR1A4 LTR MaLR 1 321 -8 3 1264 378 42 0 0 chr6 89000508 89000556 -60516481 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1264 242 304 14 0 chr6 89000748 89000817 -60516220 + C-rich Low_complexity Low_complexity 1 70 0 5 1264 380 244 33 0 chr6 89001649 89001739 -60515298 - B1F2 SINE Alu -52 97 5 6 1264 533 316 105 59 chr6 89001930 89002273 -60514764 + MLT1A0 LTR MaLR 1 407 -1 7 1264 1412 233 98 11 chr6 89002721 89003069 -60513968 + MTEa LTR MaLR 2 379 0 8 1264 240 266 42 76 chr6 89003090 89003208 -60513829 - MLT1H LTR MaLR 0 549 436 9 1264 270 81 0 0 chr6 89003640 89003677 -60513360 + (G)n Simple_repeat Simple_repeat 1 37 0 1 1264 233 351 8 26 chr6 89003798 89003915 -60513122 - MLT1H LTR MaLR -22 352 238 9 1264 279 0 0 0 chr6 89003990 89004021 -60513016 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1264 239 130 63 143 chr6 89004040 89004103 -60512934 - RSINE1 SINE B4 -36 129 72 1 1264 616 305 9 19 chr6 89004239 89004453 -60512584 + L3 LINE CR1 867 1078 -3411 1 1264 212 307 40 0 chr6 89004570 89004645 -60512392 - MIR SINE MIR -163 99 22 1 1264 487 242 11 0 chr6 89004867 89005045 -60511992 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1264 345 208 26 13 chr6 89005874 89005952 -60511085 + MLT1L LTR MaLR 148 226 -384 1 1264 731 256 57 23 chr6 89006303 89006567 -60510470 - L1M3 LINE L1 -2367 3773 3501 1 1264 374 300 33 8 chr6 89006673 89006794 -60510243 - MTEa LTR MaLR -10 369 246 1 1264 315 269 43 81 chr6 89006952 89007138 -60509899 - L1M3 LINE L1 -2785 3355 3177 1 1264 234 0 0 0 chr6 89007144 89007170 -60509867 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 1264 881 241 75 0 chr6 89007178 89007377 -60509660 + B3 SINE B2 1 214 -2 2 1264 561 208 61 46 chr6 89007451 89007582 -60509455 - RSINE1 SINE B4 -31 134 2 2 1264 320 266 178 0 chr6 89007582 89007751 -60509286 - L1M3 LINE L1 -2975 3165 2967 1 1264 405 81 0 0 chr6 89007793 89007855 -60509182 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1264 842 209 14 0 chr6 89007861 89008009 -60509028 - B3A SINE B2 -41 157 8 2 1264 1019 153 48 20 chr6 89008009 89008258 -60508779 + RMER10A LTR ERVL 1 442 0 2 1264 281 326 30 60 chr6 89008265 89008301 -60508736 - L1M2 LINE L1 -3218 3630 3598 2 1264 953 259 117 15 chr6 89008301 89008634 -60508403 - ORR1D1 LTR MaLR -3 371 5 2 1264 319 309 34 34 chr6 89008634 89008846 -60508191 - L1M2 LINE L1 -3251 3597 3390 2 1264 341 317 28 0 chr6 89008893 89009035 -60508002 - L1M2 LINE L1 -4526 2323 2178 2 1264 850 167 20 46 chr6 89009095 89009246 -60507791 - B1_Mur1 SINE Alu -2 147 1 2 1264 338 324 58 21 chr6 89009545 89009734 -60507303 - L1M2 LINE L1 -4980 1789 1594 2 1264 1442 79 16 5 chr6 89010000 89010191 -60506846 + B2_Mm2 SINE B2 1 193 -2 2 1264 835 143 6 12 chr6 89010458 89010621 -60506416 + CT-rich Low_complexity Low_complexity 2 163 0 2 1264 347 277 12 0 chr6 89010632 89010715 -60506322 - PB1D7 SINE Alu -8 112 29 3 1264 1380 164 92 25 chr6 89010712 89010993 -60506044 + ORR1D1 LTR MaLR 12 311 -63 3 1264 181 79 26 26 chr6 89011057 89011081 -60505956 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1264 1239 61 0 0 chr6 89011081 89011228 -60505809 - B1_Mm SINE Alu 0 147 1 3 1264 181 79 26 26 chr6 89011228 89011242 -60505795 + (TTTTG)n Simple_repeat Simple_repeat 3 17 0 3 1264 308 119 0 17 chr6 89011268 89011328 -60505709 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1264 645 14 0 0 chr6 89011331 89011405 -60505632 + (GGGAGA)n Simple_repeat Simple_repeat 6 79 0 3 1264 533 243 6 103 chr6 89011457 89011613 -60505424 - B4A SINE B4 -148 144 4 3 1264 997 92 48 21 chr6 89011639 89011784 -60505253 - B1_Mur4 SINE Alu -1 149 1 3 1264 541 250 89 30 chr6 89012469 89012638 -60504399 + MTEa LTR MaLR 1 179 -200 3 1264 428 339 59 18 chr6 89012638 89012691 -60504346 + MT2A LTR ERVL 1 231 -302 4 1264 193 163 0 39 chr6 89012691 89012742 -60504295 + C-rich Low_complexity Low_complexity 2 50 0 4 1264 720 335 56 7 chr6 89012742 89013028 -60504009 + MT2A LTR ERVL 225 524 -9 4 1264 1484 160 0 0 chr6 89013063 89013288 -60503749 - URR1A DNA MER1_type -1 225 1 4 1264 230 288 86 78 chr6 89013796 89013924 -60503113 - ORR1E LTR MaLR -167 192 64 4 1264 380 222 325 6 chr6 89014124 89014287 -60502750 - B3 SINE B2 0 216 2 4 1264 437 255 0 20 chr6 89015238 89015338 -60501699 - PB1D10 SINE Alu -13 104 7 4 1264 718 227 0 28 chr6 89017108 89017253 -60499784 - B1F1 SINE Alu -7 142 2 4 1264 1079 217 39 5 chr6 89017727 89017935 -60499102 + B3 SINE B2 1 215 -1 4 1264 459 0 0 0 chr6 89018744 89018795 -60498242 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1264 203 125 25 0 chr6 89019713 89019753 -60497284 + (GGAGAA)n Simple_repeat Simple_repeat 4 44 0 4 1264 595 274 100 86 chr6 89021093 89021311 -60495726 - MLT1A0 LTR MaLR -2 363 140 5 1264 1028 211 9 78 chr6 89021311 89021542 -60495495 - B3 SINE B2 0 216 2 5 1264 595 274 100 86 chr6 89021542 89021662 -60495375 - MLT1A0 LTR MaLR -226 139 20 5 1264 399 238 14 19 chr6 89022439 89022650 -60494387 + GA-rich Low_complexity Low_complexity 1 209 0 5 1264 871 196 74 5 chr6 89024379 89024569 -60492468 + B3 SINE B2 1 203 -13 5 1264 603 309 107 0 chr6 89024618 89024796 -60492241 + B4A SINE B4 16 212 -80 5 1264 544 214 257 19 chr6 89024792 89025006 -60492031 + MTD LTR MaLR 153 417 -2 5 1264 247 320 67 30 chr6 89025019 89025319 -60491718 + RMER17D LTR ERVK 155 465 -424 5 1264 1231 61 0 0 chr6 89025319 89025467 -60491570 - B1_Mus1 SINE Alu 0 148 1 5 1264 342 0 0 0 chr6 89025482 89025520 -60491517 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 5 1264 354 23 0 0 chr6 89025847 89025890 -60491147 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1264 498 256 75 0 chr6 89026183 89026316 -60490721 - RSINE1 SINE B4 -19 146 4 6 1264 332 307 94 64 chr6 89026450 89026652 -60490385 + L2a LINE L2 3217 3424 -2 6 1264 426 327 88 0 chr6 89026674 89026833 -60490204 + MER21B LTR ERV1 1 173 -690 6 1264 1400 275 19 21 chr6 89026954 89027329 -60489708 + MTEa LTR MaLR 3 376 -3 6 1264 1588 188 149 18 chr6 89027465 89027807 -60489230 + MTD LTR MaLR 10 396 -23 6 1264 654 200 73 50 chr6 89027807 89027840 -60489197 + ORR1D1 LTR MaLR 1 32 -342 6 1264 3896 93 69 31 chr6 89027840 89028419 -60488618 + MT2B LTR ERVL 1 601 0 6 1264 654 200 73 50 chr6 89028419 89028536 -60488501 + ORR1D1 LTR MaLR 33 156 -218 6 1264 1254 81 0 0 chr6 89028536 89028708 -60488329 + (TTTCC)n Simple_repeat Simple_repeat 4 175 0 6 1264 654 200 73 50 chr6 89028708 89028735 -60488302 + ORR1D1 LTR MaLR 157 183 -191 6 1264 665 24 0 12 chr6 89028735 89028784 -60488253 + (TTC)n Simple_repeat Simple_repeat 1 49 0 6 1264 1410 56 0 0 chr6 89028784 89028964 -60488073 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1264 665 24 0 12 chr6 89028964 89028998 -60488039 + (TTC)n Simple_repeat Simple_repeat 3 36 0 7 1264 1109 78 0 0 chr6 89028998 89029140 -60487897 - B1_Mm SINE Alu 0 147 6 7 1264 1064 178 22 58 chr6 89029133 89029359 -60487678 + ORR1D1 LTR MaLR 149 366 -8 6 1264 401 310 89 19 chr6 89029746 89029904 -60487133 + MER21B LTR ERV1 37 205 -658 7 1264 272 282 62 18 chr6 89029938 89030050 -60486987 + MLT1A1 LTR MaLR 17 133 -275 7 1264 725 61 10 0 chr6 89031396 89031495 -60485542 + (TCTCCC)n Simple_repeat Simple_repeat 3 102 0 7 1264 233 308 111 0 chr6 89032646 89032763 -60484274 - RMER15 LTR ERVL 0 575 446 7 1264 367 376 63 0 chr6 89032956 89033145 -60483892 + L1M5 LINE L1 4074 4274 -1872 7 1264 640 314 62 50 chr6 89033376 89033805 -60483232 + L1MC2 LINE L1 5369 5790 -569 7 1264 647 267 7 20 chr6 89033901 89034054 -60482983 - B3A SINE B2 -47 151 1 7 1264 983 187 100 15 chr6 89034064 89034353 -60482684 - MTD LTR MaLR 0 421 3 7 1264 275 305 0 78 chr6 89034379 89034416 -60482621 + ID_B1 SINE B4 130 224 0 8 1264 396 154 0 15 chr6 89034416 89034482 -60482555 + PB1D10 SINE Alu 52 116 -1 8 1264 1107 173 91 0 chr6 89034542 89034739 -60482298 - B3 SINE B2 -1 215 1 8 1264 386 386 37 5 chr6 89034898 89035088 -60481949 + L1MC2 LINE L1 6111 6306 -38 7 1264 494 189 73 8 chr6 89035160 89035283 -60481754 + L1MC3 LINE L1 5828 5958 -1827 8 1264 621 298 148 39 chr6 89035300 89035862 -60481175 + L1MC3 LINE L1 5997 6619 -1166 8 1264 314 277 132 82 chr6 89035868 89036050 -60480987 + L1MC2 LINE L1 6419 6603 -1182 7 1264 373 64 64 0 chr6 89036050 89036128 -60480909 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 8 1264 314 277 132 82 chr6 89036128 89036263 -60480774 + L1MC2 LINE L1 6604 6751 -1034 7 1264 351 0 0 0 chr6 89036265 89036304 -60480733 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1264 3753 186 102 80 chr6 89036306 89037183 -60479854 + RMER19B LTR ERVK 7 902 0 8 1264 21 0 0 0 chr6 89037233 89037254 -60479783 + AT_rich Low_complexity Low_complexity 1 21 0 8 1264 1109 223 243 0 chr6 89037567 89037872 -60479165 - MTE2b LTR MaLR 0 379 1 8 1264 182 33 0 62 chr6 89038373 89038405 -60478632 + (CACCC)n Simple_repeat Simple_repeat 1 30 0 8 1264 1313 224 128 19 chr6 89038430 89038749 -60478288 - ORR1D2 LTR MaLR 0 370 17 9 1264 423 0 0 0 chr6 89039247 89039294 -60477743 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1264 578 250 108 54 chr6 89039651 89039680 -60477357 - B3A SINE B2 0 198 176 9 1264 366 121 0 0 chr6 89039680 89039746 -60477291 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 1264 578 250 108 54 chr6 89039746 89039902 -60477135 - B3A SINE B2 -23 175 3 9 1264 377 344 57 38 chr6 89040282 89040545 -60476492 - L1MEg LINE L1 -4792 1292 1025 9 1264 2335 143 56 27 chr6 89040827 89040889 -60476148 - MTC LTR MaLR 0 421 366 9 1264 2455 95 6 3 chr6 89040889 89041215 -60475822 + ORR1A2 LTR MaLR 1 327 0 9 1264 2335 143 56 27 chr6 89041215 89041561 -60475476 - MTC LTR MaLR -56 365 1 9 1264 820 185 189 11 chr6 89041562 89041753 -60475284 - B4 SINE B4 -60 232 8 9 1264 211 0 28 56 chr6 89041764 89041800 -60475237 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9 1264 1000 115 39 0 chr6 89041800 89041956 -60475081 - B2_Mm2 SINE B2 -33 162 1 9 1264 1139 107 11 0 chr6 89041966 89042143 -60474894 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1264 2170 158 24 8 chr6 89042431 89042808 -60474229 + ORR1C2 LTR MaLR 2 384 0 1 1264 216 0 0 0 chr6 89042880 89042904 -60474133 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1264 997 75 98 0 chr6 89042904 89043037 -60474000 - B1_Mus2 SINE Alu 0 147 2 1 1264 339 96 0 0 chr6 89043152 89043204 -60473833 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1264 273 244 130 35 chr6 89043214 89043337 -60473700 + MTEb LTR MaLR 228 379 0 1 1264 429 265 59 0 chr6 89043547 89043649 -60473388 + B3 SINE B2 2 109 -107 1 1264 306 0 0 0 chr6 89043662 89043696 -60473341 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 1 1264 24 32 0 0 chr6 89043699 89043730 -60473307 + AT_rich Low_complexity Low_complexity 1 31 0 1 1264 196 342 151 17 chr6 89043836 89043955 -60473082 + MIR SINE MIR 32 166 -96 1 1264 716 250 92 46 chr6 89044153 89044371 -60472666 + ORR1D2 LTR MaLR 6 233 -137 1 1264 1075 188 43 0 chr6 89044419 89044626 -60472411 + B3 SINE B2 1 216 0 1 1264 684 109 0 10 chr6 89044716 89044818 -60472219 + ORR1D2 LTR MaLR 270 370 0 1 1264 594 114 50 7 chr6 89046598 89046739 -60470298 + CT-rich Low_complexity Low_complexity 2 148 0 1 1264 1166 81 0 0 chr6 89046739 89046887 -60470150 - B1_Mus1 SINE Alu 0 148 1 1 1264 198 0 0 0 chr6 89046910 89046932 -60470105 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1264 512 244 65 0 chr6 89046996 89047119 -60469918 - B1F2 SINE Alu -5 144 14 1 1264 249 271 23 12 chr6 89047350 89047436 -60469601 + L1MC3 LINE L1 6945 7031 -754 1 1264 315 278 117 16 chr6 89047657 89047785 -60469252 + L1MC3 LINE L1 7363 7503 -282 1 1264 184 200 36 0 chr6 89048126 89048181 -60468856 + GA-rich Low_complexity Low_complexity 2 58 0 1 1264 1686 225 32 49 chr6 89048206 89048612 -60468425 - MTD LTR MaLR -18 401 3 1 1264 656 232 91 40 chr6 89048744 89048829 -60468208 + ID SINE ID 1 83 -141 1 1264 1499 166 53 119 chr6 89048829 89049240 -60467797 - ORR1C2 LTR MaLR 0 384 1 1 1264 656 232 91 40 chr6 89049240 89049352 -60467685 + ID_B1 SINE B4 84 208 -16 1 1264 180 0 0 0 chr6 89049599 89049619 -60467418 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1264 634 258 26 19 chr6 89050119 89050273 -60466764 - RSINE1 SINE B4 -9 156 2 1 1264 636 287 21 0 chr6 89051760 89051903 -60465134 - RSINE1 SINE B4 -14 151 6 1 1264 487 308 103 39 chr6 89051984 89052187 -60464850 - ID_B1 SINE B4 -7 217 2 1 1264 198 118 0 0 chr6 89052571 89052605 -60464432 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1 1264 328 302 0 75 chr6 89052662 89052785 -60464252 + B1F2 SINE Alu 1 115 -5 1 1264 378 256 70 35 chr6 89052806 89052948 -60464089 - HAL1 LINE L1 -855 1652 1506 1 1264 538 272 45 11 chr6 89052981 89053249 -60463788 - HAL1 LINE L1 -1305 1202 926 1 1264 354 23 0 0 chr6 89053558 89053601 -60463436 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 1 1264 1160 61 0 45 chr6 89053643 89053798 -60463239 + B1_Mus1 SINE Alu 1 148 0 1 1264 330 277 0 0 chr6 89053922 89053987 -60463050 - ID4 SINE ID -17 66 2 1 1264 439 299 0 49 chr6 89053994 89054138 -60462899 - B1F1 SINE Alu -1 148 12 1 1264 776 205 68 36 chr6 89054382 89054574 -60462463 - B3A SINE B2 0 198 1 1 1264 717 45 0 0 chr6 89055164 89055253 -60461784 + (TTTCC)n Simple_repeat Simple_repeat 3 91 0 1 1264 1261 97 17 6 chr6 89055253 89055429 -60461608 - B2_Mm2 SINE B2 -15 180 3 1 1264 1519 137 194 16 chr6 89056427 89056731 -60460306 - ORR1C1 LTR MaLR -18 360 3 1 1264 844 256 44 38 chr6 89057040 89057360 -60459677 - RLTR15 LTR ERVK -37 322 1 1 1264 215 204 0 18 chr6 89057876 89057931 -60459106 + (CAGAGA)n Simple_repeat Simple_repeat 4 57 0 1 1264 354 299 75 14 chr6 89058280 89058426 -60458611 - MTE2a LTR MaLR -49 330 176 1 1264 252 245 0 0 chr6 89058413 89058462 -60458575 - MTE2a LTR MaLR -328 51 3 1 1264 21 36 0 0 chr6 89058482 89058510 -60458527 + AT_rich Low_complexity Low_complexity 1 28 0 1 1264 680 222 86 0 chr6 89058691 89058853 -60458184 - Lx8 LINE L1 -178 7295 7120 1 1264 408 20 0 0 chr6 89059190 89059239 -60457798 + (TAG)n Simple_repeat Simple_repeat 1 49 0 1 1264 487 271 49 49 chr6 89059272 89059435 -60457602 - RSINE1 SINE B4 0 165 3 1 1264 643 149 40 2 chr6 89059585 89059707 -60457330 + B1_Mur4 SINE Alu 2 144 -5 1 1264 784 231 212 39 chr6 89060241 89060547 -60456490 - ORR1E LTR MaLR 0 359 1 1 1264 816 191 20 7 chr6 89060852 89061000 -60456037 - B1_Mur4 SINE Alu 0 150 1 1 1264 327 337 116 27 chr6 89061057 89061316 -60455721 - L1MC LINE L1 -2228 5654 5373 1 1264 422 270 0 83 chr6 89062119 89062200 -60454837 - ID_B1 SINE B4 0 224 148 1 1264 180 0 0 0 chr6 89062200 89062220 -60454817 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1264 422 270 0 83 chr6 89062220 89062259 -60454778 - ID_B1 SINE B4 -77 147 114 1 1264 833 250 16 16 chr6 89062761 89062952 -60454085 + B3A SINE B2 2 192 -6 1 1264 1129 192 44 0 chr6 89062952 89063155 -60453882 + B3 SINE B2 2 213 -3 1 1264 570 250 17 0 chr6 89063818 89063938 -60453099 - RSINE1 SINE B4 -41 124 3 1 1264 203 400 68 14 chr6 89064653 89064800 -60452237 + MIR SINE MIR 27 181 -81 1 1264 521 245 225 6 chr6 89065072 89065232 -60451805 - B3A SINE B2 -3 195 1 1 1264 1180 75 0 0 chr6 89065241 89065387 -60451650 - B1_Mus2 SINE Alu 0 147 2 1 1264 232 221 29 0 chr6 89065394 89065462 -60451575 + T-rich Low_complexity Low_complexity 1 70 0 1 1264 364 290 160 0 chr6 89065494 89065625 -60451412 - B3A SINE B2 -18 180 29 1 1264 227 344 75 38 chr6 89065702 89065862 -60451175 - ORR1D1 LTR MaLR 0 374 209 1 1264 340 348 40 131 chr6 89066282 89066320 -60450717 + MTEb LTR MaLR 5 34 -325 1 1264 5088 127 8 7 chr6 89066320 89067056 -60449981 + RMER19A LTR ERVK 1 737 0 1 1264 345 295 27 126 chr6 89067056 89067392 -60449645 + MTEb LTR MaLR 35 362 -17 1 1264 393 271 82 18 chr6 89068240 89068478 -60448559 - L1M4 LINE L1 -1402 4744 4475 1 1264 1252 104 16 6 chr6 89069153 89069336 -60447701 + B2_Mm1t SINE B2 1 185 -8 1 1264 285 331 141 53 chr6 89069363 89069647 -60447390 + MER21B LTR ERV1 129 437 -426 1 1264 336 278 105 59 chr6 89069689 89069842 -60447195 + MER21B LTR ERV1 499 658 -205 1 1264 1845 190 97 3 chr6 89069978 89070348 -60446689 - MTD LTR MaLR 0 419 15 1 1264 214 323 117 41 chr6 89070439 89070610 -60446427 + L2 LINE L2 2680 2863 -556 1 1264 392 228 0 0 chr6 89071498 89071577 -60445460 - MIR SINE MIR -2 260 182 1 1264 21 0 0 0 chr6 89072534 89072555 -60444482 + GC_rich Low_complexity Low_complexity 1 21 0 1 1264 372 321 34 70 chr6 89073543 89073887 -60443150 - MTEa LTR MaLR 0 379 34 1 1264 556 196 144 30 chr6 89074174 89074410 -60442627 + MTD LTR MaLR 110 420 -1 1 1264 486 0 0 0 chr6 89074456 89074510 -60442527 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1264 531 156 9 94 chr6 89074510 89074616 -60442421 - B1_Mm SINE Alu -42 105 9 1 1264 447 19 0 0 chr6 89077202 89077254 -60439783 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1264 845 129 41 6 chr6 89077328 89077500 -60439537 + GA-rich Low_complexity Low_complexity 1 178 0 1 1264 1310 13 19 0 chr6 89077658 89077816 -60439221 + (GGGAGA)n Simple_repeat Simple_repeat 6 166 0 1 1264 396 0 0 0 chr6 89079197 89079241 -60437796 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1264 540 156 0 0 chr6 89079241 89079350 -60437687 + GA-rich Low_complexity Low_complexity 1 109 0 1 1264 923 118 13 0 chr6 89079352 89079504 -60437533 + (GAAA)n Simple_repeat Simple_repeat 4 157 0 1 1264 3418 133 76 52 chr6 89080472 89081146 -60435891 - RMER6C LTR ERVK 0 690 1 1 1264 212 163 0 0 chr6 89081230 89081273 -60435764 + T-rich Low_complexity Low_complexity 1 43 0 1 1264 628 219 41 0 chr6 89081610 89081733 -60435304 + RSINE1 SINE B4 2 129 -36 1 1264 281 230 76 41 chr6 89082818 89082963 -60434074 - Lx8 LINE L1 -2 7471 7322 1 1264 866 239 37 29 chr6 89082976 89083248 -60433789 - Lx8 LINE L1 -323 7150 6877 1 1264 678 242 20 59 chr6 89083267 89083469 -60433568 - B3A SINE B2 -4 194 1 1 1264 405 0 0 0 chr6 89083798 89083843 -60433194 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1264 609 288 153 15 chr6 89084131 89084392 -60432645 - MLT2B4 LTR ERVL -240 316 20 1 1264 452 311 54 27 chr6 89084554 89084739 -60432298 + MER21B LTR ERV1 42 231 -632 1 1264 367 391 59 26 chr6 89085256 89085529 -60431508 + MER21B LTR ERV1 503 784 -79 1 1264 459 294 45 9 chr6 89085632 89085742 -60431295 + RSINE1 SINE B4 15 128 -37 1 1264 383 347 63 39 chr6 89086004 89086289 -60430748 + B4A SINE B4 1 292 0 1 1264 662 238 96 12 chr6 89086361 89086527 -60430510 + B3A SINE B2 3 182 -16 1 1264 204 343 8 156 chr6 89088008 89088085 -60428952 + MER5A DNA MER1_type 3 77 -112 1 1264 934 92 222 0 chr6 89088085 89088238 -60428799 + B2_Mm2 SINE B2 1 187 -8 1 1264 204 343 8 156 chr6 89088238 89088288 -60428749 + MER5A DNA MER1_type 78 111 -78 1 1264 252 184 0 0 chr6 89088290 89088339 -60428698 + CT-rich Low_complexity Low_complexity 1 49 0 1 1264 596 216 9 9 chr6 89088503 89088615 -60428422 - RSINE1 SINE B4 -53 112 1 1 1264 432 265 41 27 chr6 89088613 89088759 -60428278 - MTEb LTR MaLR 0 379 225 1 1264 243 0 0 0 chr6 89090275 89090302 -60426735 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1264 585 286 142 23 chr6 89091856 89092074 -60424963 - Tigger7 DNA MER2_type -2057 434 191 1 1264 307 339 165 13 chr6 89092377 89092601 -60424436 - HAL1 LINE L1 -1099 1408 1151 1 1264 1949 146 81 6 chr6 89092708 89093067 -60423970 - RMER10B LTR ERVL -12 386 1 1 1264 270 0 0 0 chr6 89093400 89093430 -60423607 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1264 1144 30 15 0 chr6 89093909 89094044 -60422993 + B1_Mm SINE Alu 2 138 -9 1 1264 256 316 12 48 chr6 89094939 89095022 -60422015 + ID4_ SINE ID 4 83 0 1 1264 207 0 0 0 chr6 89096606 89096629 -60420408 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1264 1064 205 0 23 chr6 89097424 89097639 -60419398 - B3 SINE B2 -6 210 1 2 1264 235 300 0 14 chr6 89097758 89097829 -60419208 + ID4 SINE ID 1 70 -13 2 1264 536 208 19 0 chr6 89098870 89098976 -60418061 - PB1D10 SINE Alu -8 109 2 2 1264 283 152 0 25 chr6 89099514 89099595 -60417442 + CT-rich Low_complexity Low_complexity 1 79 0 2 1264 958 234 80 19 chr6 89099637 89099899 -60417138 - B4A SINE B4 -14 278 1 2 1264 260 315 110 33 chr6 89100128 89100463 -60416574 - L1MEg LINE L1 -3399 2747 2387 2 1264 251 304 29 29 chr6 89100520 89100659 -60416378 - L1MEg LINE L1 -3872 2274 2136 2 1264 277 298 87 6 chr6 89101077 89101249 -60415788 - L1MEg LINE L1 -4505 1737 1552 2 1264 718 265 87 20 chr6 89101279 89101306 -60415731 + L1M1 LINE L1 5472 5496 -807 2 1264 243 0 0 0 chr6 89101306 89101333 -60415704 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 2 1264 718 265 87 20 chr6 89101333 89101605 -60415432 + L1M1 LINE L1 5497 5791 -512 2 1264 291 54 0 0 chr6 89101663 89101700 -60415337 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1264 360 205 71 12 chr6 89101712 89101796 -60415241 + PB1D10 SINE Alu 28 116 -1 2 1264 318 26 0 0 chr6 89101812 89101851 -60415186 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 2 1264 5128 9 0 0 chr6 89102324 89102886 -60414151 - L1Md_A LINE L1 0 6582 6021 2 1264 3642 167 168 43 chr6 89102916 89103712 -60413325 - RMER19B LTR ERVK -6 896 1 2 1264 953 243 30 0 chr6 89103831 89104033 -60413004 + B3 SINE B2 4 211 -5 2 1264 1854 188 82 0 chr6 89104474 89104814 -60412223 + MTD LTR MaLR 10 377 -42 2 1264 1134 203 19 0 chr6 89104939 89105146 -60411891 - B3 SINE B2 -3 213 3 2 1264 1213 188 61 4 chr6 89105195 89105441 -60411596 + ORR1D1 LTR MaLR 1 260 -114 2 1264 1425 132 0 9 chr6 89105462 89105676 -60411361 - ORR1B2 LTR MaLR 0 367 156 2 1264 411 56 0 0 chr6 89105686 89105740 -60411297 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1264 772 177 192 18 chr6 89105740 89105959 -60411078 - ORR1C1 LTR MaLR -121 257 1 2 1264 295 275 130 91 chr6 89105959 89106014 -60411023 + ORR1C2 LTR MaLR 267 329 -55 2 1264 326 309 92 103 chr6 89106014 89106085 -60410952 - L1M2 LINE L1 -2944 3199 3121 2 1264 1199 62 0 0 chr6 89106085 89106231 -60410806 - B1_Mm SINE Alu 0 147 2 2 1264 326 309 92 103 chr6 89106231 89106304 -60410733 - L1M2 LINE L1 -3023 3120 3038 2 1264 204 122 0 0 chr6 89106304 89106345 -60410692 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1264 326 309 92 103 chr6 89106345 89106567 -60410470 - L1M2 LINE L1 -3106 3037 2837 2 1264 1532 201 112 43 chr6 89106923 89107298 -60409739 + MT2B LTR ERVL 1 554 -47 2 1264 285 29 0 0 chr6 89107298 89107332 -60409705 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1264 335 42 0 40 chr6 89107333 89107383 -60409654 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2 1264 1532 201 58 41 chr6 89107383 89107430 -60409607 + MT2B LTR ERVL 555 601 0 2 1264 2254 138 8 8 chr6 89107856 89108213 -60408824 - ORR1B2 LTR MaLR -8 359 3 2 1264 180 206 0 0 chr6 89108554 89108588 -60408449 - L2c LINE L2 -17 3370 3337 2 1264 242 278 41 14 chr6 89109778 89109851 -60407186 + LTR82A LTR ERVL 781 855 -17 2 1264 266 270 14 0 chr6 89110523 89110597 -60406440 + ID4 SINE ID 1 75 -8 2 1264 219 69 0 0 chr6 89111602 89111631 -60405406 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 1264 441 281 219 0 chr6 89111641 89111819 -60405218 + L1MDa LINE L1 304 520 -6113 2 1264 227 316 71 25 chr6 89112084 89112282 -60404755 + L1MDa LINE L1 969 1175 -5458 2 1264 281 217 265 0 chr6 89112545 89112628 -60404409 - RSINE1 SINE B4 -53 112 8 2 1264 2137 147 117 26 chr6 89112844 89113263 -60403774 + RLTR28 LTR ERVL 3 459 -65 2 1264 275 262 36 36 chr6 89113458 89113541 -60403496 - ID4_ SINE ID 0 83 1 2 1264 212 333 0 16 chr6 89113566 89113627 -60403410 - B1F SINE Alu -8 141 82 2 1264 743 266 60 37 chr6 89113693 89113993 -60403044 + RLTR15 LTR ERVK 1 307 -52 2 1264 799 164 7 35 chr6 89114227 89114372 -60402665 - B1_Mur3 SINE Alu 0 149 9 2 1264 682 217 128 0 chr6 89114513 89114693 -60402344 + ID_B1 SINE B4 3 205 -19 2 1264 414 0 0 0 chr6 89114695 89114741 -60402296 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1264 391 325 105 8 chr6 89114750 89114874 -60402163 + RSINE1 SINE B4 3 138 -27 2 1264 1070 118 6 0 chr6 89115062 89115232 -60401805 + (GAAA)n Simple_repeat Simple_repeat 3 173 0 2 1264 247 301 150 40 chr6 89115271 89115444 -60401593 - MER20B DNA MER1_type -500 283 92 2 1264 202 315 126 65 chr6 89115586 89115800 -60401237 + L2 LINE L2 814 1040 -2379 2 1264 242 260 212 30 chr6 89115821 89115920 -60401117 + PB1D9 SINE Alu 4 120 0 2 1264 778 184 14 47 chr6 89116011 89116022 -60401015 - B1_Mus1 SINE Alu -1 147 137 2 1264 459 0 0 0 chr6 89116022 89116073 -60400964 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2 1264 778 184 14 47 chr6 89116073 89116209 -60400828 - B1_Mus1 SINE Alu -12 136 5 2 1264 377 213 22 176 chr6 89116089 89116271 -60400766 - MT2B LTR ERVL -306 278 125 2 1264 3756 170 113 73 chr6 89116380 89117219 -60399818 - RMER19B LTR ERVK -27 875 3 2 1264 1982 188 93 3 chr6 89117223 89117601 -60399436 - MTD LTR MaLR -7 412 1 2 1264 904 282 74 17 chr6 89117606 89117956 -60399081 + ORR1D2 LTR MaLR 1 370 0 2 1264 334 301 24 8 chr6 89118203 89118327 -60398710 + B1_Mur4 SINE Alu 23 148 -2 2 1264 426 276 141 8 chr6 89119636 89119764 -60397273 + B1_Mm SINE Alu 2 146 -1 2 1264 257 100 0 62 chr6 89120563 89120627 -60396410 + A-rich Low_complexity Low_complexity 1 60 0 2 1264 383 259 24 73 chr6 89120630 89120647 -60396390 + ID_B1 SINE B4 74 136 -156 2 1264 660 213 22 7 chr6 89120647 89120784 -60396253 + B1_Mm SINE Alu 6 144 -3 2 1264 383 259 24 73 chr6 89120784 89120810 -60396227 + ID_B1 SINE B4 137 246 -46 2 1264 232 327 126 74 chr6 89120848 89121023 -60396014 - RMER21B LTR ERV1 -211 631 448 2 1264 477 318 81 14 chr6 89121153 89121376 -60395661 + RLTR14 LTR ERV1 17 254 -128 2 1264 342 61 0 0 chr6 89123893 89123942 -60393095 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1264 466 235 73 29 chr6 89123959 89124095 -60392942 + B1_Mm SINE Alu 2 143 -4 2 1264 248 290 74 74 chr6 89124442 89124550 -60392487 - MT2A LTR ERVL -79 454 347 2 1264 278 26 26 0 chr6 89124793 89124832 -60392205 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 1264 599 243 7 7 chr6 89124880 89125025 -60392012 + B1_Mm SINE Alu 2 146 -1 2 1264 182 62 31 0 chr6 89125317 89125349 -60391688 + (CAGGG)n Simple_repeat Simple_repeat 2 34 0 2 1264 377 285 39 39 chr6 89125420 89125599 -60391438 + RLTR14 LTR ERV1 17 195 -187 2 1264 264 304 38 112 chr6 89127794 89128079 -60388958 - MT2A LTR ERVL -62 539 132 2 1264 7468 63 2 24 chr6 89128114 89128514 -60388523 + L1Md_F2 LINE L1 4616 5003 -880 2 1264 1019 104 0 0 chr6 89128514 89128658 -60388379 - B1_Mm SINE Alu -1 146 3 2 19 7468 63 2 24 chr6 89128658 89129250 -60387787 + L1Md_F2 LINE L1 5004 5586 -297 2 1265 7864 64 1 1 chr6 89129250 89130246 -60386791 + L1Md_F2 LINE L1 5587 6582 0 2 1265 213 163 23 0 chr6 89130293 89130336 -60386701 + A-rich Low_complexity Low_complexity 2 45 0 2 1265 2735 80 11 5 chr6 89130362 89130741 -60386296 + L1Md_F2 LINE L1 6202 6582 0 2 1265 212 321 86 0 chr6 89130741 89130822 -60386215 + B4A SINE B4 83 170 -122 2 1265 762 199 0 21 chr6 89130988 89131132 -60385905 - B1_Mur2 SINE Alu -6 143 3 2 1265 466 235 73 29 chr6 89131460 89131596 -60385441 + B1_Mm SINE Alu 2 143 -4 2 1265 526 254 7 7 chr6 89132317 89132460 -60384577 + B1_Mm SINE Alu 5 147 0 2 1265 231 311 46 46 chr6 89132900 89133008 -60384029 - MT2A LTR ERVL -79 454 347 2 1265 315 85 0 0 chr6 89133245 89133292 -60383745 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 2 1265 642 229 7 7 chr6 89133330 89133475 -60383562 + B1_Mm SINE Alu 2 146 -1 2 1265 421 266 0 0 chr6 89133941 89134050 -60382987 + RLTR14 LTR ERV1 87 195 -187 2 1265 280 167 0 0 chr6 89134604 89134646 -60382391 + polypyrimidine Low_complexity Low_complexity 1 42 0 2 1265 244 312 38 94 chr6 89136469 89136575 -60380462 - MT2A LTR ERVL -302 231 132 2 1265 7410 64 2 25 chr6 89136610 89137011 -60380026 + L1Md_F2 LINE L1 4616 5003 -880 2 1265 1011 105 0 0 chr6 89137011 89137154 -60379883 - B1_Mm SINE Alu -2 145 3 2 1265 7410 64 2 25 chr6 89137154 89137744 -60379293 + L1Md_F2 LINE L1 5004 5584 -299 2 1265 7827 65 1 1 chr6 89137746 89138742 -60378295 + L1Md_F2 LINE L1 5587 6582 0 2 1265 2826 72 8 5 chr6 89138853 89139233 -60377804 + L1Md_F2 LINE L1 6202 6582 0 2 1265 762 199 0 21 chr6 89139480 89139624 -60377413 - B1_Mur2 SINE Alu -6 143 3 2 1265 466 235 73 29 chr6 89139952 89140088 -60376949 + B1_Mm SINE Alu 2 143 -4 2 1265 511 261 7 7 chr6 89140809 89140952 -60376085 + B1_Mm SINE Alu 5 147 0 2 1265 231 311 46 46 chr6 89141392 89141500 -60375537 - MT2A LTR ERVL -79 454 347 2 1265 315 85 0 0 chr6 89141737 89141784 -60375253 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 2 1265 629 236 7 7 chr6 89141822 89141967 -60375070 + B1_Mm SINE Alu 2 146 -1 2 1265 421 266 0 0 chr6 89142433 89142542 -60374495 + RLTR14 LTR ERV1 87 195 -187 2 1265 186 133 0 0 chr6 89143098 89143128 -60373909 + (TCC)n Simple_repeat Simple_repeat 1 30 0 2 1265 228 311 46 46 chr6 89144759 89144867 -60372170 - MT2A LTR ERVL -79 454 347 2 1265 238 289 37 110 chr6 89144930 89145039 -60371998 - MT2A LTR ERVL -301 232 132 2 1265 7408 67 2 24 chr6 89145074 89145474 -60371563 + L1Md_F2 LINE L1 4616 5003 -880 2 1265 1013 110 0 0 chr6 89145474 89145619 -60371418 - B1_Mm SINE Alu 0 147 3 2 1265 7408 67 2 24 chr6 89145619 89146211 -60370826 + L1Md_F2 LINE L1 5004 5586 -297 2 1265 7765 68 1 1 chr6 89146212 89147207 -60369830 + L1Md_F2 LINE L1 5588 6582 0 2 1265 200 200 0 0 chr6 89147253 89147293 -60369744 + A-rich Low_complexity Low_complexity 1 40 0 2 1265 2657 93 16 3 chr6 89147319 89147695 -60369342 + L1Md_F2 LINE L1 6202 6582 0 2 1265 211 317 85 0 chr6 89147699 89147781 -60369256 + B4A SINE B4 82 170 -122 2 1265 762 199 0 21 chr6 89147947 89148091 -60368946 - B1_Mur2 SINE Alu -6 143 3 2 1265 450 242 73 29 chr6 89148418 89148554 -60368483 + B1_Mm SINE Alu 2 143 -4 3 1265 511 261 7 7 chr6 89149275 89149418 -60367619 + B1_Mm SINE Alu 5 147 0 3 1265 231 311 46 46 chr6 89149858 89149966 -60367071 - MT2A LTR ERVL -79 454 347 3 1265 315 85 0 0 chr6 89150203 89150250 -60366787 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 3 1265 661 222 7 7 chr6 89150288 89150433 -60366604 + B1_Mm SINE Alu 2 146 -1 3 1265 8560 3 0 0 chr6 89151767 89152689 -60364348 - MERVL-int LTR ERVL -4563 922 1 3 1265 1607 46 0 0 chr6 89152689 89152885 -60364152 - MT2_Mm LTR ERVL 0 493 298 3 1265 3097 22 5 0 chr6 89152880 89153248 -60363789 - MT-int LTR MaLR -72 1026 657 3 1265 421 266 0 0 chr6 89153447 89153556 -60363481 + RLTR14 LTR ERV1 87 195 -187 3 1265 280 167 0 0 chr6 89154111 89154153 -60362884 + polypyrimidine Low_complexity Low_complexity 1 42 0 3 1265 250 237 36 118 chr6 89154868 89154978 -60362059 + B1F2 SINE Alu 48 148 -1 3 1265 225 311 46 46 chr6 89155808 89155916 -60361121 - MT2A LTR ERVL -79 454 347 3 1265 238 289 37 110 chr6 89155979 89156088 -60360949 - MT2A LTR ERVL -301 232 132 3 1265 7277 74 0 33 chr6 89156123 89156530 -60360507 + L1Md_F2 LINE L1 4616 5003 -880 3 1265 1082 70 7 7 chr6 89156530 89156675 -60360362 - B1_Mm SINE Alu 0 147 3 3 1265 7277 74 0 33 chr6 89156675 89157271 -60359766 + L1Md_F2 LINE L1 5004 5586 -297 3 1265 7440 74 14 7 chr6 89157272 89158260 -60358777 + L1Md_F2 LINE L1 5588 6582 0 3 1265 796 200 0 0 chr6 89158512 89158647 -60358390 - B1_Mur2 SINE Alu -6 143 9 3 1265 254 206 0 150 chr6 89158576 89158656 -60358381 - MT2B2 LTR ERVL -350 234 167 3 1265 479 227 73 29 chr6 89158974 89159110 -60357927 + B1_Mm SINE Alu 2 143 -4 3 1265 520 246 7 14 chr6 89159837 89159981 -60357056 + B1_Mm SINE Alu 5 147 0 3 1265 441 95 0 0 chr6 89160768 89160831 -60356206 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 3 1265 642 229 7 7 chr6 89160864 89161009 -60356028 + B1_Mm SINE Alu 2 146 -1 3 1265 198 91 0 0 chr6 89161279 89161312 -60355725 + (CAGGG)n Simple_repeat Simple_repeat 2 34 0 3 1265 405 284 0 0 chr6 89161453 89161562 -60355475 + RLTR14 LTR ERV1 87 195 -187 3 1265 183 129 0 0 chr6 89162117 89162148 -60354889 + (TTC)n Simple_repeat Simple_repeat 3 33 0 3 1265 220 247 36 118 chr6 89162825 89162935 -60354102 + B1F2 SINE Alu 48 148 -1 3 1265 293 330 10 10 chr6 89163454 89163582 -60353455 - MT2A LTR ERVL -70 531 347 3 1265 678 201 43 0 chr6 89163841 89163980 -60353057 + B1_Mm SINE Alu 2 146 -1 3 1265 192 213 0 0 chr6 89164135 89164196 -60352841 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 3 1265 294 29 0 0 chr6 89164933 89164968 -60352069 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3 1265 984 246 37 26 chr6 89165021 89165384 -60351653 + RLTR33 LTR ERVK 175 592 -86 3 1265 24 0 0 0 chr6 89166103 89166127 -60350910 + AT_rich Low_complexity Low_complexity 1 24 0 3 1265 361 370 38 67 chr6 89166316 89166629 -60350408 - HAL1 LINE L1 -893 1614 1311 3 1265 288 273 15 0 chr6 89166634 89166700 -60350337 - LTR82A LTR ERVL -562 310 244 3 1265 431 289 80 4 chr6 89166716 89166946 -60350091 + L1M5 LINE L1 4668 4922 -1224 3 1265 307 328 45 15 chr6 89167068 89167201 -60349836 + L1MD3 LINE L1 7844 7980 -15 3 1265 1160 222 61 119 chr6 89167258 89167601 -60349436 + MTE2b LTR MaLR 1 323 -56 3 1265 661 122 9 9 chr6 89167601 89167717 -60349320 + (TCC)n Simple_repeat Simple_repeat 1 116 0 3 1265 728 173 47 0 chr6 89167717 89167844 -60349193 - B1_Mur2 SINE Alu -8 141 9 3 1265 365 168 44 106 chr6 89167744 89167857 -60349180 - MT2B LTR ERVL -337 264 159 3 1265 630 204 26 60 chr6 89168277 89168428 -60348609 + B1_Mur3 SINE Alu 4 149 0 3 1265 214 246 103 17 chr6 89169025 89169083 -60347954 + PB1D9 SINE Alu 22 84 -36 3 1265 780 181 7 20 chr6 89169131 89169278 -60347759 + B1_Mur1 SINE Alu 5 149 0 3 1265 718 196 15 0 chr6 89169291 89169424 -60347613 + B3 SINE B2 36 170 -46 3 1265 368 204 0 111 chr6 89169940 89170039 -60346998 + MT2B LTR ERVL 170 257 -344 3 1265 920 87 8 0 chr6 89169956 89170083 -60346954 + B1_Mur4 SINE Alu 23 150 0 3 1265 27 0 0 0 chr6 89170083 89170110 -60346927 + AT_rich Low_complexity Low_complexity 1 27 0 3 1265 566 28 14 0 chr6 89170231 89170303 -60346734 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 3 1265 295 320 18 91 chr6 89170385 89170495 -60346542 + PB1D7 SINE Alu 9 110 -10 3 1265 971 205 117 17 chr6 89170506 89170858 -60346179 + L1M4 LINE L1 4318 4704 -1442 3 1265 675 35 0 0 chr6 89171458 89171544 -60345493 + (TG)n Simple_repeat Simple_repeat 2 87 0 3 1265 696 172 9 0 chr6 89172043 89172159 -60344878 + ORR1D1 LTR MaLR 1 117 -257 3 1265 2329 171 24 39 chr6 89172159 89172627 -60344410 + RMER6B LTR ERVK 1 461 0 3 1265 8906 145 31 42 chr6 89172627 89174589 -60342448 + MYSERV6-int LTR ERVK 1 2042 -6917 3 1265 1266 122 16 0 chr6 89174589 89174778 -60342259 + B2_Mm2 SINE B2 1 192 -3 3 1265 2081 141 62 26 chr6 89174778 89174824 -60342213 + MYSERV6-int LTR ERVK 2043 2083 -6876 3 1265 2617 115 40 118 chr6 89174852 89175452 -60341585 + MYSERV6-int LTR ERVK 4442 4994 -3965 3 1265 230 275 70 28 chr6 89175452 89175523 -60341514 + B1_Mus1 SINE Alu 1 74 -74 3 1265 290 271 0 77 chr6 89175533 89175611 -60341426 + B1_Mur4 SINE Alu 1 71 -49 3 1265 7761 121 55 12 chr6 89175611 89176959 -60340078 + MYSERV6-int LTR ERVK 6363 7768 -1191 3 1265 2925 119 15 38 chr6 89176960 89177430 -60339607 + RMER6B LTR ERVK 1 459 -2 3 1265 655 245 199 26 chr6 89177430 89177656 -60339381 + ORR1D1 LTR MaLR 110 374 0 3 1265 2121 181 19 5 chr6 89177660 89178033 -60339004 + ORR1D1-int LTR MaLR 5 382 -988 3 1265 3727 148 27 2 chr6 89178033 89178622 -60338415 + ORR1D1-int LTR MaLR 770 1373 -136 3 1265 1103 61 0 0 chr6 89178622 89178754 -60338283 + B1_Mm SINE Alu 5 136 -11 3 1265 630 0 0 0 chr6 89178754 89178824 -60338213 + (CAAAA)n Simple_repeat Simple_repeat 3 72 0 3 1265 1184 68 7 0 chr6 89178831 89178977 -60338060 + B1_Mm SINE Alu 1 147 0 3 1265 1349 61 0 6 chr6 89178997 89179178 -60337859 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1265 307 122 0 58 chr6 89179187 89179239 -60337798 + ORR1D1-int LTR MaLR 1360 1408 -101 3 1265 531 0 0 0 chr6 89179241 89179300 -60337737 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 1265 1182 85 0 0 chr6 89179301 89179454 -60337583 - B2_Mm2 SINE B2 -39 156 4 3 1265 526 108 0 0 chr6 89179456 89179530 -60337507 + ORR1D1-int LTR MaLR 1389 1462 -47 3 1265 1027 221 53 29 chr6 89179515 89179744 -60337293 + ORR1D1-int LTR MaLR 560 769 -601 3 1265 2565 62 3 3 chr6 89179744 89180070 -60336967 + ORR1A2 LTR MaLR 1 326 -1 3 1265 3075 185 46 15 chr6 89180070 89180648 -60336389 + ORR1D1-int LTR MaLR 763 1358 -12 3 1265 680 196 21 76 chr6 89180652 89180796 -60336241 + ORR1D1 LTR MaLR 1 136 -238 3 1265 1356 170 4 13 chr6 89180799 89181026 -60336011 + URR1A DNA MER1_type 2 226 0 3 1265 836 151 221 0 chr6 89181026 89181224 -60335813 + ORR1D1 LTR MaLR 131 372 -2 3 1265 557 83 0 12 chr6 89181592 89181677 -60335360 + (TC)n Simple_repeat Simple_repeat 1 84 0 3 1265 321 256 45 8 chr6 89182126 89182260 -60334777 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 3 1265 1173 252 93 34 chr6 89182267 89182591 -60334446 - MTE2a LTR MaLR -13 366 24 3 1265 300 309 103 0 chr6 89182483 89182609 -60334428 - MT2A LTR ERVL -390 143 5 3 1265 509 245 97 22 chr6 89182822 89183005 -60334032 - MLT2B2 LTR ERVL -409 192 1 3 1265 1117 177 86 0 chr6 89183102 89183300 -60333737 - B3 SINE B2 0 216 2 3 1265 2248 89 38 6 chr6 89183868 89184184 -60332853 - ORR1A3 LTR MaLR 0 326 1 3 1265 236 303 84 66 chr6 89184457 89184623 -60332414 - LTR50 LTR ERVL -598 197 29 3 1265 260 320 72 25 chr6 89184866 89185119 -60331918 + MER113A DNA MER1_type 189 461 -60 3 1265 208 281 65 44 chr6 89185351 89185521 -60331516 - MIR SINE MIR -36 172 2 3 1265 333 0 0 0 chr6 89188280 89188317 -60328720 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1265 820 295 72 20 chr6 89188319 89188568 -60328469 - B4A SINE B4 -26 266 5 3 1265 390 254 48 37 chr6 89189183 89189371 -60327666 - L1MC5 LINE L1 -191 7770 7581 3 1265 241 297 175 44 chr6 89190461 89190690 -60326347 - MER74A LTR ERVL -2 556 298 3 1265 21 0 0 0 chr6 89191494 89191515 -60325522 + AT_rich Low_complexity Low_complexity 1 21 0 3 1265 752 142 420 40 chr6 89191535 89191796 -60325241 - ORR1D1 LTR MaLR 0 374 14 3 1265 216 0 0 0 chr6 89191796 89191820 -60325217 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 3 1265 304 344 63 36 chr6 89195582 89195805 -60321232 + L1ME3B LINE L1 5725 5953 -287 3 1265 1069 287 93 98 chr6 89196624 89197002 -60320035 - MTD LTR MaLR 0 379 4 3 1265 282 250 64 21 chr6 89197880 89197974 -60319063 + MLT1A1 LTR MaLR 227 324 -84 3 1265 351 0 0 0 chr6 89198091 89198130 -60318907 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1265 237 229 146 8 chr6 89198130 89198249 -60318788 + MIR SINE MIR 42 169 -93 3 1265 223 319 58 58 chr6 89199474 89199594 -60317443 - AmnSINE1 SINE SINE -453 122 3 3 1265 346 296 11 0 chr6 89199507 89199595 -60317442 - 5S rRNA rRNA -31 90 2 3 1265 2352 84 0 15 chr6 89199742 89200068 -60316969 + ORR1A4 LTR MaLR 1 321 -8 3 1265 838 158 8 0 chr6 89200863 89200996 -60316041 - B1_Mur4 SINE Alu -6 144 11 3 1265 208 286 0 14 chr6 89201392 89201463 -60315574 + (TCCA)n Simple_repeat Simple_repeat 2 71 0 3 1265 4704 119 52 3 chr6 89201464 89202156 -60314881 + RMER19A LTR ERVK 1 726 -11 3 1265 208 318 11 0 chr6 89202165 89202341 -60314696 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 3 1265 209 329 137 31 chr6 89202351 89202643 -60314394 - L2a LINE L2 -2 3424 3102 3 1265 420 349 93 24 chr6 89203020 89203267 -60313770 + MLT1H LTR MaLR 149 412 -137 3 1265 391 151 0 44 chr6 89203291 89203381 -60313656 + CT-rich Low_complexity Low_complexity 4 89 0 3 1265 708 213 270 9 chr6 89203385 89203704 -60313333 + MTC LTR MaLR 13 414 -5 3 1265 208 139 0 27 chr6 89204617 89204654 -60312383 + C-rich Low_complexity Low_complexity 2 37 0 3 1265 429 156 0 0 chr6 89204777 89204854 -60312183 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1265 740 83 0 9 chr6 89205742 89205852 -60311185 + (TC)n Simple_repeat Simple_repeat 2 110 0 3 1265 253 345 33 72 chr6 89207354 89207507 -60309530 - MLT1H LTR MaLR -395 154 8 3 1265 313 313 110 68 chr6 89207543 89207793 -60309244 - MER102b DNA MER1_type -7 334 66 4 1265 1471 231 54 9 chr6 89208337 89208669 -60308368 + MTD LTR MaLR 5 351 -68 4 1265 287 176 0 3 chr6 89208673 89208726 -60308311 - MTD LTR MaLR -14 405 318 4 1265 317 328 77 55 chr6 89211276 89211457 -60305580 + MLT1D LTR MaLR 17 201 -304 4 1265 204 227 76 0 chr6 89211894 89211960 -60305077 - L2 LINE L2 -1178 2241 2171 4 1265 200 337 10 31 chr6 89212254 89212352 -60304685 - L2 LINE L2 -1294 2125 2030 4 1265 678 293 90 55 chr6 89212976 89213265 -60303772 + RMER15 LTR ERVL 273 571 -4 4 1265 312 299 150 38 chr6 89213296 89213456 -60303581 + LTR33 LTR ERVL 258 435 -80 4 1265 865 206 78 29 chr6 89213831 89214036 -60303001 + B3 SINE B2 1 215 -1 4 1265 598 313 10 30 chr6 89214438 89214639 -60302398 - B3A SINE B2 0 198 2 4 1265 26 30 0 0 chr6 89214857 89214890 -60302147 + AT_rich Low_complexity Low_complexity 1 33 0 4 1265 901 143 0 0 chr6 89214892 89215018 -60302019 + B1_Mus1 SINE Alu 17 142 -6 4 1265 642 26 0 0 chr6 89215018 89215094 -60301943 + (GA)n Simple_repeat Simple_repeat 1 76 0 4 1265 1106 88 6 0 chr6 89215100 89215260 -60301777 + (GAAAA)n Simple_repeat Simple_repeat 3 163 0 4 1265 426 113 52 0 chr6 89215863 89215978 -60301059 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 4 1265 336 294 30 6 chr6 89216183 89216351 -60300686 + L1ME4a LINE L1 5297 5468 -656 4 1265 486 0 0 0 chr6 89216588 89216642 -60300395 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1265 249 57 0 0 chr6 89216642 89216676 -60300361 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1265 282 312 92 46 chr6 89217011 89217273 -60299764 + L1ME4a LINE L1 5845 6118 -6 4 1265 517 303 55 45 chr6 89217722 89218094 -60298943 - MLT1A LTR MaLR -2 406 1 4 1265 298 276 13 0 chr6 89219487 89219563 -60297474 - ERVL-int LTR ERVL -2058 3699 3623 4 1265 376 330 37 26 chr6 89219765 89219955 -60297082 - ERVL-E-int LTR ERVL -5118 549 358 4 1265 1741 222 212 15 chr6 89220180 89220656 -60296381 + RMER15 LTR ERVL 1 570 -5 4 1265 790 234 28 11 chr6 89221418 89221595 -60295442 + B3A SINE B2 1 180 -18 4 1265 207 0 0 0 chr6 89221656 89221679 -60295358 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1265 712 169 51 0 chr6 89221679 89221797 -60295240 + B1_Mur2 SINE Alu 25 148 -1 4 1265 333 315 98 46 chr6 89221680 89221853 -60295184 + B4A SINE B4 111 292 0 4 1265 21 36 0 0 chr6 89222051 89222079 -60294958 + AT_rich Low_complexity Low_complexity 1 28 0 4 1265 1165 336 120 7 chr6 89223845 89224387 -60292650 - Tigger7 DNA MER2_type -1887 604 2 4 1265 288 335 48 24 chr6 89225205 89225370 -60291667 - MLT1H LTR MaLR -2 547 379 4 1265 263 280 69 46 chr6 89226222 89226353 -60290684 + RMER15 LTR ERVL 369 502 -73 4 1265 811 139 66 0 chr6 89227001 89227123 -60289914 + B1_Mus1 SINE Alu 2 131 -17 4 1265 224 243 14 0 chr6 89227131 89227205 -60289832 + GA-rich Low_complexity Low_complexity 3 77 0 4 1265 238 323 99 57 chr6 89227454 89227595 -60289442 + MER89 LTR ERV1 141 287 -272 4 1265 839 361 29 9 chr6 89227856 89228461 -60288576 + L1M5 LINE L1 4084 4701 -1445 4 1265 266 0 29 0 chr6 89228642 89228676 -60288361 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 4 1265 493 241 181 0 chr6 89228676 89228792 -60288245 - B1_Mur2 SINE Alu -11 138 2 4 1265 777 172 0 0 chr6 89229359 89229773 -60287264 + (TG)n Simple_repeat Simple_repeat 1 414 0 4 1265 323 250 0 13 chr6 89229823 89229900 -60287137 - PB1D10 SINE Alu -1 116 41 4 1265 252 86 0 0 chr6 89230094 89230129 -60286908 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1265 601 272 185 103 chr6 89232096 89232621 -60284416 + L1M4 LINE L1 18 585 -5957 4 1265 1129 194 19 10 chr6 89233177 89233385 -60283652 - B3 SINE B2 -6 210 1 4 1265 284 336 19 0 chr6 89233588 89233695 -60283342 + (CA)n Simple_repeat Simple_repeat 1 109 0 4 1265 323 355 18 43 chr6 89234091 89234368 -60282669 + L1M4 LINE L1 4396 4665 -1979 4 1265 257 271 6 0 chr6 89235200 89235366 -60281671 + (CAGAC)n Simple_repeat Simple_repeat 4 170 0 4 1265 292 269 11 0 chr6 89235357 89235532 -60281505 + (ACTAG)n Simple_repeat Simple_repeat 1 177 0 4 1265 451 301 0 19 chr6 89235545 89235704 -60281333 + (CAGAC)n Simple_repeat Simple_repeat 2 157 0 4 1265 441 0 0 0 chr6 89236230 89236279 -60280758 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1265 216 0 0 0 chr6 89236279 89236302 -60280735 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1265 998 198 55 35 chr6 89236576 89236775 -60280262 + B3 SINE B2 1 203 -13 4 1265 207 100 0 0 chr6 89237279 89237309 -60279728 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1265 522 245 274 76 chr6 89237325 89237522 -60279515 - B4 SINE B4 -22 270 35 4 1265 297 190 282 12 chr6 89237552 89237637 -60279400 - PB1D10 SINE Alu -9 108 1 4 1265 1225 41 0 13 chr6 89237686 89237835 -60279202 + B1_Mm SINE Alu 1 147 0 4 1265 729 193 103 17 chr6 89237854 89238028 -60279009 - B3A SINE B2 -6 192 4 4 1265 258 259 0 0 chr6 89239299 89239354 -60277683 + B1F SINE Alu 75 129 -20 4 1265 1866 128 87 32 chr6 89239354 89239700 -60277337 - MTB_Mm LTR MaLR -3 404 40 4 1265 591 226 193 15 chr6 89239703 89239905 -60277132 + B4A SINE B4 8 245 -47 4 1265 802 78 65 0 chr6 89239914 89240222 -60276815 + (TAGA)n Simple_repeat Simple_repeat 1 327 0 4 1265 262 358 7 26 chr6 89240306 89240461 -60276576 + L1MB3 LINE L1 5424 5575 -596 4 1265 569 240 132 0 chr6 89240635 89240839 -60276198 + L1MB3 LINE L1 5777 6007 -176 4 1265 1144 101 0 11 chr6 89243845 89244025 -60273012 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 4 1265 480 159 26 9 chr6 89244026 89244140 -60272897 + GA-rich Low_complexity Low_complexity 4 119 0 4 1265 844 231 37 44 chr6 89245593 89245865 -60271172 + Charlie5 DNA MER1_type 2262 2531 -93 4 1265 1500 216 73 37 chr6 89245883 89246281 -60270756 + MTD LTR MaLR 1 408 -13 4 1265 235 309 198 23 chr6 89246389 89246561 -60270476 - L2a LINE L2 -271 3155 2954 4 1265 189 147 0 0 chr6 89247789 89247823 -60269214 + (CAGCC)n Simple_repeat Simple_repeat 4 37 0 4 1265 435 235 6 12 chr6 89248197 89248365 -60268672 + (CA)n Simple_repeat Simple_repeat 2 168 0 4 1265 180 0 0 0 chr6 89248926 89248946 -60268091 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 4 1265 243 213 13 39 chr6 89249020 89249098 -60267939 + G-rich Low_complexity Low_complexity 2 77 0 4 1265 517 282 141 58 chr6 89251200 89251527 -60265510 + ORR1E LTR MaLR 4 357 -2 4 1265 220 295 13 0 chr6 89251615 89251693 -60265344 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 1265 186 115 38 19 chr6 89251715 89251768 -60265269 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1265 977 176 5 65 chr6 89251787 89251988 -60265049 - MTC LTR MaLR 0 421 233 4 1265 267 329 14 7 chr6 89252011 89252155 -60264882 + (TG)n Simple_repeat Simple_repeat 1 145 0 4 1265 243 239 0 0 chr6 89252176 89252243 -60264794 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1265 315 0 0 0 chr6 89252310 89252345 -60264692 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1265 401 244 21 31 chr6 89253165 89253280 -60263757 + MIRb SINE MIR 18 137 -131 4 1265 1299 201 139 3 chr6 89253679 89253732 -60263305 - MTEa LTR MaLR 0 379 326 4 1265 216 0 0 0 chr6 89253732 89253756 -60263281 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 4 1265 1299 206 138 3 chr6 89253756 89254037 -60263000 - MTEa LTR MaLR -54 325 2 4 1265 295 319 81 77 chr6 89254043 89254291 -60262746 - MLT1E1A LTR MaLR -23 657 409 4 1265 1087 180 48 19 chr6 89255176 89255385 -60261652 + B3 SINE B2 1 215 -1 4 1265 432 0 0 0 chr6 89255472 89255520 -60261517 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 4 1265 1144 75 7 0 chr6 89255521 89255667 -60261370 + B1_Mm SINE Alu 1 147 0 4 1265 187 136 17 17 chr6 89255667 89255727 -60261310 + A-rich Low_complexity Low_complexity 1 60 0 4 1265 255 361 0 87 chr6 89256165 89256244 -60260793 + MT2B2 LTR ERVL 93 155 -429 4 1265 425 288 23 23 chr6 89256244 89256372 -60260665 + B1F SINE Alu 1 128 -21 4 1265 320 298 24 0 chr6 89256667 89256791 -60260246 + HAL1 LINE L1 1482 1608 -899 4 1265 407 292 51 19 chr6 89256806 89256963 -60260074 - MER2 DNA MER2_type -49 296 126 4 1265 556 272 94 47 chr6 89257039 89257274 -60259763 + ORR1E LTR MaLR 39 284 -75 4 1265 346 268 12 0 chr6 89257290 89257372 -60259665 + RSINE1 SINE B4 3 85 -80 4 1265 841 226 79 0 chr6 89257644 89257834 -60259203 - B3 SINE B2 -11 205 1 4 1265 503 315 8 0 chr6 89257892 89258022 -60259015 - RSINE1 SINE B4 -32 133 3 4 1265 309 343 116 73 chr6 89258185 89258418 -60258619 + MLT1F LTR MaLR 10 252 -296 4 1265 182 271 42 0 chr6 89258854 89258902 -60258135 - L2 LINE L2 -2639 780 731 4 1265 300 348 66 95 chr6 89259479 89259784 -60257253 + ORR1E LTR MaLR 64 359 0 4 158 206 244 206 22 chr6 89259945 89260037 -60257000 - L2b LINE L2 0 3375 3267 4 1266 327 78 0 0 chr6 89260595 89260646 -60256391 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1266 201 196 0 0 chr6 89263201 89263252 -60253785 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1266 331 350 29 14 chr6 89264126 89264265 -60252772 - RMER15 LTR ERVL -162 413 273 4 1266 228 135 0 0 chr6 89268280 89268317 -60248720 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1266 211 262 0 0 chr6 89273701 89273743 -60243294 + polypyrimidine Low_complexity Low_complexity 2 43 0 4 1266 235 256 93 0 chr6 89277175 89277261 -60239776 + L1MB3 LINE L1 5908 6001 -182 4 1266 404 208 0 0 chr6 89277355 89277432 -60239605 + PB1D10 SINE Alu 35 111 -6 4 1266 799 255 0 0 chr6 89277440 89277593 -60239444 + RSINE1 SINE B4 3 155 -10 4 1266 332 305 158 0 chr6 89277691 89277855 -60239182 + L1MC2 LINE L1 5811 6000 -344 5 1266 203 366 75 0 chr6 89280585 89280678 -60236359 + MIR3 SINE MIR 87 186 -22 5 1266 765 228 52 29 chr6 89296315 89296618 -60220419 + ORR1E LTR MaLR 3 379 0 5 1266 220 286 226 9 chr6 89302439 89302545 -60214492 + MIRm SINE MIR 112 240 -28 5 1266 376 292 38 0 chr6 89306069 89306175 -60210862 + MIR3 SINE MIR 50 159 -49 5 1266 189 74 0 0 chr6 89307582 89307609 -60209428 + (CAG)n Simple_repeat Simple_repeat 1 27 0 5 1266 181 344 0 0 chr6 89309566 89309627 -60207410 - MIRm SINE MIR -132 144 84 5 1266 232 209 33 55 chr6 89311973 89312064 -60204973 + (CCCGG)n Simple_repeat Simple_repeat 5 93 0 5 1266 27 92 0 0 chr6 89312438 89312514 -60204523 + GC_rich Low_complexity Low_complexity 1 76 0 5 1266 273 29 0 0 chr6 89312646 89312680 -60204357 + (CGGGGG)n Simple_repeat Simple_repeat 2 35 0 5 1266 22 70 0 0 chr6 89312701 89312744 -60204293 + GC_rich Low_complexity Low_complexity 1 43 0 5 1266 250 259 67 11 chr6 89313878 89313968 -60203069 - MIRb SINE MIR -158 110 16 5 1266 421 320 6 28 chr6 89315066 89315246 -60201791 + (CATA)n Simple_repeat Simple_repeat 1 176 0 5 1266 310 397 0 11 chr6 89315181 89315445 -60201592 + (CA)n Simple_repeat Simple_repeat 1 261 0 5 1266 267 73 18 35 chr6 89316210 89316267 -60200770 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 5 1266 355 241 23 0 chr6 89316483 89316570 -60200467 - Lx9 LINE L1 -1129 6515 6427 5 1266 628 275 125 51 chr6 89316573 89316926 -60200111 + Lx9 LINE L1 7246 7624 -20 5 1266 350 261 136 6 chr6 89316944 89317121 -60199916 + L1MDa LINE L1 1074 1273 -5360 5 1266 668 279 83 95 chr6 89317169 89317588 -60199449 + L1MDa LINE L1 1377 1837 -4796 5 1266 1034 81 22 0 chr6 89317588 89317724 -60199313 + B1_Mus1 SINE Alu 2 140 -8 5 1266 668 279 83 95 chr6 89317724 89318018 -60199019 + L1MDa LINE L1 1838 2081 -4552 5 1266 302 156 191 43 chr6 89318147 89318241 -60198796 + L1MDa LINE L1 2442 2549 -4084 5 1266 375 178 0 0 chr6 89318243 89318316 -60198721 + L1MD2 LINE L1 5911 5983 -376 5 1266 630 300 0 0 chr6 89318682 89318822 -60198215 - B1F SINE Alu -9 140 1 5 1266 639 39 0 0 chr6 89320179 89320257 -60196780 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1266 660 194 143 7 chr6 89322121 89322261 -60194776 + B3A SINE B2 2 160 -38 5 1266 189 107 0 0 chr6 89322263 89322291 -60194746 + (CATG)n Simple_repeat Simple_repeat 3 30 0 5 1266 779 206 17 61 chr6 89322547 89322728 -60194309 + B3 SINE B2 19 191 -25 5 1266 420 20 0 0 chr6 89322730 89322779 -60194258 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1266 240 35 0 0 chr6 89322779 89322808 -60194229 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 5 1266 835 168 0 7 chr6 89323140 89323260 -60193777 + B1_Mus1 SINE Alu 3 122 -26 5 1266 234 0 0 0 chr6 89323260 89323286 -60193751 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 5 1266 835 168 0 7 chr6 89323286 89323303 -60193734 + B1_Mus1 SINE Alu 123 139 -9 5 1266 1574 52 0 5 chr6 89323489 89323681 -60193356 + B2_Mm1t SINE B2 2 192 -1 5 1266 302 281 144 10 chr6 89324584 89324688 -60192349 + ID_B1 SINE B4 15 132 -92 5 1266 3804 189 90 22 chr6 89324788 89325724 -60191313 + RMER1B Other Other 65 1063 -3 5 1266 266 250 0 24 chr6 89325724 89325806 -60191231 + ID_B1 SINE B4 143 222 -2 5 1266 447 19 0 0 chr6 89325944 89325996 -60191041 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 5 1266 228 164 200 0 chr6 89327279 89327334 -60189703 - ID4_ SINE ID -16 67 2 5 1266 432 257 18 44 chr6 89327343 89327457 -60189580 - PB1D10 SINE Alu -2 115 5 5 1266 915 217 29 33 chr6 89327469 89327679 -60189358 - B3 SINE B2 -6 210 2 5 1266 322 336 91 6 chr6 89328098 89328277 -60188760 + MIR SINE MIR 15 204 -64 5 1266 240 336 161 17 chr6 89328625 89328855 -60188182 + LTR33A LTR ERVL 256 518 -2 5 1266 417 39 0 0 chr6 89329005 89329056 -60187981 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1266 184 285 23 39 chr6 89329874 89329959 -60187078 - MIRc SINE MIR -37 171 88 5 1266 390 79 26 13 chr6 89330384 89330461 -60186576 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1266 305 39 0 148 chr6 89330514 89330575 -60186462 - HAL1-3A_ME LINE L1 -831 2027 1976 5 1266 283 101 50 12 chr6 89330575 89330655 -60186382 + (TG)n Simple_repeat Simple_repeat 1 83 0 5 1266 372 374 50 36 chr6 89337974 89338193 -60178844 + MLT1C LTR MaLR 60 281 -186 5 1266 1683 188 165 22 chr6 89338448 89338812 -60178225 + MTC LTR MaLR 6 421 0 5 1266 382 323 76 43 chr6 89339068 89339278 -60177759 - MIRb SINE MIR -23 245 29 5 1266 846 199 0 0 chr6 89340329 89340475 -60176562 + B3 SINE B2 1 146 -70 5 1266 191 235 19 19 chr6 89340822 89340874 -60176163 - L3 LINE CR1 -913 3576 3525 5 1266 2086 152 14 9 chr6 89342378 89342722 -60174315 + ORR1A1 LTR MaLR 1 346 0 5 1266 198 0 0 0 chr6 89343605 89343627 -60173410 + (CTG)n Simple_repeat Simple_repeat 1 22 0 5 1266 2322 161 30 2 chr6 89344218 89344611 -60172426 - MTC LTR MaLR -17 404 1 5 1266 486 200 161 37 chr6 89345229 89345390 -60171647 - L1MC LINE L1 -991 5155 4975 5 1266 399 287 67 66 chr6 89346126 89346477 -60170560 + L1MC4 LINE L1 6598 6926 -956 5 1266 310 278 138 9 chr6 89347520 89347636 -60169401 + L1M5 LINE L1 4619 4749 -1397 5 1266 21 36 0 0 chr6 89348747 89348775 -60168262 + AT_rich Low_complexity Low_complexity 1 28 0 5 1266 188 179 0 49 chr6 89349141 89349182 -60167855 + L2a LINE L2 3380 3418 -8 5 1266 221 301 68 0 chr6 89349488 89349561 -60167476 + L3 LINE CR1 3677 3754 -735 5 1266 239 333 0 0 chr6 89349591 89349672 -60167365 + L2 LINE L2 2782 2862 -557 5 1266 240 295 59 67 chr6 89349767 89349914 -60167123 + MIRb SINE MIR 40 179 -29 5 1266 940 224 193 39 chr6 89350191 89350554 -60166483 + MTD LTR MaLR 1 419 0 5 1266 2179 103 25 15 chr6 89355391 89355717 -60161320 + ORR1A4 LTR MaLR 1 329 0 5 1266 591 15 0 0 chr6 89358195 89358263 -60158774 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 5 1266 1855 216 52 29 chr6 89360344 89360859 -60156178 + RLTR11A2 LTR ERVK 1 527 0 5 1266 269 184 111 62 chr6 89360891 89360972 -60156065 + MTB_Mm LTR MaLR 219 303 -104 5 1266 801 177 19 0 chr6 89361633 89361952 -60155085 + CT-rich Low_complexity Low_complexity 1 325 0 5 1266 313 291 147 15 chr6 89361953 89362089 -60154948 - HAL1-3A_ME LINE L1 -419 2439 2286 5 1266 509 175 10 0 chr6 89362089 89362192 -60154845 + CT-rich Low_complexity Low_complexity 2 105 0 5 1266 922 233 17 10 chr6 89363986 89364249 -60152788 + MERVL_2A-int LTR ERVL 4992 5329 -432 5 1266 1165 231 67 14 chr6 89364316 89364716 -60152321 - MERVL_2A-int LTR ERVL -359 5402 4850 5 1266 663 230 135 31 chr6 89364745 89364938 -60152099 - MTEa LTR MaLR -162 217 5 5 1266 330 269 141 49 chr6 89364944 89365249 -60151788 + L1M5 LINE L1 2712 3044 -3102 5 1266 436 307 161 32 chr6 89365819 89366068 -60150969 + L2b LINE L2 2917 3197 -178 5 1266 615 296 32 122 chr6 89366597 89366887 -60150150 - MLT1A0 LTR MaLR -16 358 80 5 1266 402 266 64 1 chr6 89367169 89367264 -60149773 + B3A SINE B2 1 100 -98 5 1266 351 0 0 0 chr6 89367264 89367303 -60149734 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1266 710 184 279 12 chr6 89367303 89367468 -60149569 - B3 SINE B2 -4 212 4 5 1266 297 279 41 147 chr6 89367468 89367589 -60149448 + B2_Mm2 SINE B2 92 194 -1 5 1266 333 313 92 72 chr6 89367781 89367988 -60149049 - ORR1E LTR MaLR -105 254 44 5 1266 281 306 217 0 chr6 89370011 89370191 -60146846 + MER58A DNA MER1_type 1 219 -5 5 1266 316 264 114 14 chr6 89370195 89370331 -60146706 - MIRc SINE MIR -48 160 16 5 1266 246 268 40 66 chr6 89372613 89372689 -60144348 + LTR33A_ LTR ERVL 184 257 -274 5 1266 630 275 0 7 chr6 89373401 89373551 -60143486 - B1F SINE Alu 0 149 1 5 1266 258 287 136 32 chr6 89374544 89374699 -60142338 + MIRb SINE MIR 84 254 -14 5 1266 255 256 39 0 chr6 89374804 89374882 -60142155 + L2a LINE L2 3327 3407 -19 5 1266 259 222 34 80 chr6 89375323 89375411 -60141626 - MIR SINE MIR -66 142 59 5 1266 338 353 72 0 chr6 89375472 89375625 -60141412 - L2b LINE L2 -1 3374 3211 5 1266 228 309 113 14 chr6 89375892 89376033 -60141004 - L2b LINE L2 -560 2859 2705 5 1266 26 0 0 0 chr6 89377041 89377067 -60139970 + AT_rich Low_complexity Low_complexity 1 26 0 5 1266 852 186 14 0 chr6 89377073 89377218 -60139819 - B1_Mur2 SINE Alu -1 148 2 5 1266 5248 49 0 6 chr6 89377462 89378101 -60138936 - L1Md_F2 LINE L1 0 6582 5948 5 1266 443 39 25 25 chr6 89378241 89378321 -60138716 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1266 483 217 77 53 chr6 89380216 89380386 -60136651 - MER5B DNA MER1_type -3 175 2 5 1266 206 364 45 9 chr6 89380419 89380530 -60136507 + MIR SINE MIR 49 163 -99 5 1266 322 306 180 6 chr6 89380788 89380949 -60136088 + ORR1E LTR MaLR 8 196 -163 5 1266 378 0 0 0 chr6 89381073 89381115 -60135922 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1266 678 279 134 37 chr6 89381406 89381652 -60135385 + MLT1C LTR MaLR 3 272 -195 5 1266 369 291 47 15 chr6 89382951 89383085 -60133952 - MIRb SINE MIR -121 147 14 5 1266 237 293 80 0 chr6 89383758 89383833 -60133204 + MLT1M LTR MaLR 173 253 -419 5 1266 771 300 85 33 chr6 89384078 89384385 -60132652 - Charlie16a DNA MER1_type -17 325 3 5 1266 233 364 123 8 chr6 89384910 89385032 -60132005 + MIR3 SINE MIR 67 202 -6 5 1266 264 273 54 18 chr6 89385046 89385158 -60131879 + L1MC4a LINE L1 5813 5928 -1954 5 1266 3535 168 9 2 chr6 89385438 89386004 -60131033 + Lx5 LINE L1 6478 7047 -3 5 1266 351 272 65 94 chr6 89386428 89386709 -60130328 - ORR1D2 LTR MaLR -8 371 1 6 1266 715 37 339 0 chr6 89387120 89387229 -60129808 + B1_Mus1 SINE Alu 2 147 -1 6 1266 188 67 0 32 chr6 89387229 89387260 -60129777 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 6 1266 1294 283 42 17 chr6 89387849 89388205 -60128832 + MTE2b LTR MaLR 3 367 -12 6 1267 220 317 107 19 chr6 89391423 89391526 -60125511 + L2b LINE L2 3070 3181 -194 6 1267 294 296 0 0 chr6 89392816 89392887 -60124150 - L1MA5 LINE L1 -358 5942 5872 6 1267 180 0 0 0 chr6 89393160 89393180 -60123857 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 6 1267 403 252 104 35 chr6 89393182 89393297 -60123740 - RSINE1 SINE B4 -29 136 14 6 1267 350 226 0 0 chr6 89394656 89394718 -60122319 - tRNA-Ala-GCY_ tRNA tRNA -7 68 7 6 1267 203 0 37 0 chr6 89395440 89395467 -60121570 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1267 672 102 0 0 chr6 89396264 89396362 -60120675 + (TCCC)n Simple_repeat Simple_repeat 4 101 0 6 1267 1362 187 247 6 chr6 89399232 89399560 -60117477 + MTB_Mm LTR MaLR 1 407 0 6 1267 406 286 27 0 chr6 89401715 89401827 -60115210 - L1MDb LINE L1 -6288 121 7 6 1267 396 294 20 4 chr6 89401906 89402030 -60115007 - B1F1 SINE Alu -23 124 1 6 1267 24 0 0 0 chr6 89402034 89402058 -60114979 + AT_rich Low_complexity Low_complexity 1 24 0 6 1267 220 171 0 0 chr6 89402177 89402212 -60114825 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1267 220 271 28 14 chr6 89403252 89403323 -60113714 + MIRb SINE MIR 194 265 -3 6 1267 769 129 0 115 chr6 89404885 89405042 -60111995 - B1_Mur4 SINE Alu -1 149 11 6 1267 942 94 0 13 chr6 89405045 89405196 -60111841 + B2_Mm2 SINE B2 40 188 -7 6 1267 236 330 115 19 chr6 89406900 89407212 -60109825 + L3 LINE CR1 2598 2939 -1550 6 1267 287 202 53 9 chr6 89408121 89408196 -60108841 + AluF_3 SINE Alu 157 206 -105 6 1267 190 359 122 0 chr6 89411883 89412039 -60104998 + MIRc SINE MIR 74 248 -20 6 1267 180 216 0 0 chr6 89412522 89412559 -60104478 - L2a LINE L2 -15 3411 3375 6 1267 214 216 19 19 chr6 89415507 89415559 -60101478 + GA-rich Low_complexity Low_complexity 3 54 0 6 1267 232 275 43 14 chr6 89417618 89417688 -60099349 - MIRb SINE MIR -61 207 136 6 1267 267 241 0 0 chr6 89417687 89417745 -60099292 - MIR SINE MIR -1 261 204 6 1267 3198 63 7 7 chr6 89421486 89421899 -60095138 - L1Md_F2 LINE L1 0 6582 6170 6 1267 537 281 127 93 chr6 89422354 89422786 -60094251 + MLT1F2 LTR MaLR 1 447 -113 6 1267 25 65 0 0 chr6 89422837 89422883 -60094154 + AT_rich Low_complexity Low_complexity 1 46 0 6 1267 387 0 0 0 chr6 89423078 89423121 -60093916 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1267 378 0 0 0 chr6 89423121 89423162 -60093875 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1267 290 221 185 23 chr6 89423308 89423438 -60093599 - L1M4 LINE L1 -4825 1821 1671 6 1267 295 299 25 25 chr6 89423741 89423861 -60093176 - L1M4 LINE L1 -6277 265 146 6 1267 235 257 12 108 chr6 89423868 89423951 -60093086 + ID_B1 SINE B4 52 126 -98 6 1267 437 111 41 14 chr6 89423949 89424022 -60093015 + RMER6C LTR ERVK 37 111 -579 6 1267 567 165 37 37 chr6 89424006 89424085 -60092952 + MT2B LTR ERVL 181 259 -342 6 1267 390 234 3 3 chr6 89424085 89424164 -60092873 + B1_Mus2 SINE Alu 2 80 -234 6 1267 2200 119 45 15 chr6 89424195 89424595 -60092442 + RMER6A LTR ERVK 345 756 0 6 1267 1448 193 60 3 chr6 89424595 89424944 -60092093 + Lx8 LINE L1 1248 1616 -4264 6 1267 6733 244 97 45 chr6 89424977 89427599 -60089438 + Lx8 LINE L1 3406 6196 -1277 6 1267 965 187 48 29 chr6 89427599 89427808 -60089229 + B3 SINE B2 2 214 -2 6 1267 1771 269 138 28 chr6 89427808 89428074 -60088963 + Lx8 LINE L1 6197 6485 -988 6 1267 300 292 0 14 chr6 89428070 89428143 -60088894 + Lx7 LINE L1 6601 6672 -1024 6 1267 1931 278 85 8 chr6 89428164 89428799 -60088238 + Lx8 LINE L1 6779 7462 -11 6 1267 34 24 0 0 chr6 89428802 89428843 -60088194 + AT_rich Low_complexity Low_complexity 1 41 0 6 1267 378 85 0 0 chr6 89429068 89429127 -60087910 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1267 491 266 62 12 chr6 89429502 89429662 -60087375 - MLT1D LTR MaLR -293 212 45 6 1267 277 215 51 0 chr6 89430544 89430623 -60086414 + L1MA5 LINE L1 6211 6293 -7 6 1267 1263 184 52 118 chr6 89430679 89431025 -60086012 + Lx5 LINE L1 6728 7050 0 6 1267 304 340 13 52 chr6 89431708 89431863 -60085174 + MIRb SINE MIR 111 259 -9 6 1267 312 27 0 0 chr6 89432178 89432215 -60084822 + (ATATG)n Simple_repeat Simple_repeat 4 40 0 6 1267 261 252 209 0 chr6 89432268 89432383 -60084654 + L1M4 LINE L1 5750 5888 -296 6 1267 2125 302 184 13 chr6 89432377 89433324 -60083713 + Lx8 LINE L1 6243 7351 -122 6 1267 198 167 0 0 chr6 89433382 89433418 -60083619 + GA-rich Low_complexity Low_complexity 4 39 0 6 1267 360 0 0 0 chr6 89434860 89434900 -60082137 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1267 390 21 0 0 chr6 89434900 89434946 -60082091 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1267 1005 159 83 15 chr6 89436460 89436664 -60080373 - URR1A DNA MER1_type 0 226 9 6 1267 332 95 35 12 chr6 89437240 89437325 -60079712 + (CAAA)n Simple_repeat Simple_repeat 2 88 0 6 1267 29 0 0 0 chr6 89438568 89438597 -60078440 + AT_rich Low_complexity Low_complexity 1 29 0 6 1267 757 229 26 79 chr6 89438603 89438793 -60078244 - B3A SINE B2 -35 181 2 6 1267 193 349 12 12 chr6 89439347 89439431 -60077606 + MIR SINE MIR 53 136 -126 6 1267 303 257 175 0 chr6 89440293 89440499 -60076538 + L1MB7 LINE L1 3070 3311 -2835 6 1267 306 254 14 0 chr6 89441223 89441234 -60075803 + B4A SINE B4 74 85 -207 6 1267 346 238 0 0 chr6 89441234 89441297 -60075740 + PB1D10 SINE Alu 1 63 -54 6 1267 319 251 163 106 chr6 89442525 89442883 -60074154 + L1MB7 LINE L1 3992 4386 -1760 6 1267 728 280 72 10 chr6 89442883 89443092 -60073945 + ID_B1 SINE B4 2 223 -1 6 1267 319 244 167 111 chr6 89443092 89443178 -60073859 + L1MB7 LINE L1 4387 4464 -1682 6 1267 1277 164 4 51 chr6 89443307 89443544 -60073493 - URR1A DNA MER1_type 0 226 1 6 1267 247 280 77 39 chr6 89443647 89443855 -60073182 + L1MB7 LINE L1 4625 4840 -1306 6 1267 611 254 254 45 chr6 89443976 89444508 -60072529 + L1M4 LINE L1 4567 5209 -937 6 1267 251 255 151 75 chr6 89444508 89444614 -60072423 + PB1D9 SINE Alu 7 120 0 6 1267 344 304 113 22 chr6 89444624 89445025 -60072012 + L1MB7 LINE L1 5176 5616 -564 6 1267 203 103 0 25 chr6 89445104 89445144 -60071893 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1267 464 192 205 16 chr6 89445151 89445273 -60071764 - B1_Mus1 SINE Alu -3 145 1 6 1267 288 266 121 72 chr6 89445389 89445596 -60071441 + L1MB7 LINE L1 5835 6051 -127 6 1267 579 310 52 82 chr6 89445691 89445907 -60071130 + L1ME3A LINE L1 5487 5706 -456 6 1267 905 239 29 0 chr6 89445907 89446116 -60070921 + B3 SINE B2 2 216 0 6 1267 579 307 54 95 chr6 89446116 89446327 -60070710 + L1ME3A LINE L1 5707 5894 -279 6 1267 200 111 0 27 chr6 89446500 89446537 -60070500 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 6 1267 212 227 55 96 chr6 89447532 89447605 -60069432 + ID_B1 SINE B4 87 156 -68 6 1267 823 0 56 0 chr6 89448822 89448929 -60068108 + (CACAG)n Simple_repeat Simple_repeat 3 115 0 6 1267 387 92 0 0 chr6 89451126 89451191 -60065846 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 6 1267 1159 64 0 0 chr6 89451192 89451333 -60065704 - B1_Mus2 SINE Alu -6 141 1 6 1267 778 233 20 40 chr6 89451338 89451539 -60065498 - B3A SINE B2 0 198 2 6 1267 183 369 42 21 chr6 89451644 89451788 -60065249 - MIRc SINE MIR -69 199 53 6 1267 1020 221 110 131 chr6 89452358 89452832 -60064205 + MT2A LTR ERVL 1 464 -69 6 1267 398 200 106 26 chr6 89452843 89452908 -60064129 + MT2A LTR ERVL 480 555 -46 6 1267 405 39 0 0 chr6 89452908 89452959 -60064078 + (TGGA)n Simple_repeat Simple_repeat 2 52 0 6 1267 398 200 106 26 chr6 89452959 89453006 -60064031 + MT2A LTR ERVL 556 601 0 6 1267 294 301 21 33 chr6 89453200 89453319 -60063718 + B4A SINE B4 28 144 -148 6 1267 225 330 100 9 chr6 89454112 89454222 -60062815 + MER102a DNA MER1_type 121 240 -90 6 1267 730 77 265 0 chr6 89454496 89454613 -60062424 + B1_Mus1 SINE Alu 1 148 0 6 1267 378 61 0 0 chr6 89454632 89454681 -60062356 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 6 1267 279 0 0 0 chr6 89454679 89454710 -60062327 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1267 1983 125 101 0 chr6 89454852 89455149 -60061888 + ORR1A2 LTR MaLR 1 327 0 6 1267 1934 114 9 60 chr6 89455459 89455794 -60061243 - ORR1A3 LTR MaLR -8 318 1 6 1267 1508 251 47 108 chr6 89455796 89456369 -60060668 + RMER1B Other Other 1 538 -528 6 1267 5229 205 59 6 chr6 89456388 89457366 -60059671 + RMER1A Other Other 1 1030 0 6 1267 809 171 13 27 chr6 89457549 89457699 -60059338 + B1_Mur3 SINE Alu 2 149 0 6 1267 3923 263 161 11 chr6 89457699 89459608 -60057429 - Tigger1 DNA MER2_type -187 2231 1 6 1267 257 276 156 55 chr6 89459951 89460208 -60056829 - L1MD3 LINE L1 0 7995 7713 6 1267 279 240 100 0 chr6 89460396 89460496 -60056541 - HAL1 LINE L1 -369 2138 2029 6 1267 251 217 0 62 chr6 89460608 89460672 -60056365 + polypyrimidine Low_complexity Low_complexity 1 60 0 6 1267 227 254 70 35 chr6 89460787 89460901 -60056136 + MLT1F2 LTR MaLR 71 188 -372 6 1267 262 130 385 18 chr6 89461555 89461664 -60055373 - B2_Mm2 SINE B2 0 195 47 6 1267 1179 93 35 6 chr6 89461711 89461884 -60055153 - B2_Mm1t SINE B2 -14 179 2 6 1267 344 229 89 32 chr6 89461925 89462083 -60054954 - HAL1 LINE L1 -1354 1153 987 6 1267 693 266 90 6 chr6 89462681 89462859 -60054178 - B4A SINE B4 -98 194 2 6 1267 502 256 21 67 chr6 89463384 89463577 -60053460 + MLT1B LTR MaLR 41 224 -166 6 1267 237 33 0 0 chr6 89463658 89463688 -60053349 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1267 932 223 11 11 chr6 89463690 89463876 -60053161 - B3 SINE B2 -30 186 1 6 1267 363 280 10 10 chr6 89463876 89463975 -60053062 + MLT1B LTR MaLR 369 467 0 6 1267 1709 178 62 16 chr6 89464381 89465053 -60051984 + L1_Mur3 LINE L1 895 1592 -4285 6 1267 265 257 0 41 chr6 89465301 89465374 -60051663 + PB1D10 SINE Alu 26 95 -22 6 1267 378 0 0 0 chr6 89465463 89465505 -60051532 + (TAA)n Simple_repeat Simple_repeat 1 42 0 7 1267 6604 170 30 22 chr6 89465513 89466772 -60050265 + L1_Mur3 LINE L1 1592 2858 -3022 6 1267 3108 74 5 2 chr6 89466772 89467167 -60049870 + MTA_Mm LTR MaLR 1 396 0 7 1267 6604 170 30 22 chr6 89467167 89467231 -60049806 + L1_Mur3 LINE L1 2859 2926 -2954 6 1267 535 207 7 7 chr6 89467304 89467440 -60049597 + CT-rich Low_complexity Low_complexity 1 136 0 7 1267 659 253 51 40 chr6 89468460 89468637 -60048400 + B3 SINE B2 8 186 -30 7 1267 676 231 80 12 chr6 89469556 89469718 -60047319 + B3A SINE B2 6 178 -20 7 1267 919 152 0 0 chr6 89469750 89469888 -60047149 - B1_Mur4 SINE Alu -12 138 1 7 1267 1152 200 83 75 chr6 89471611 89471984 -60045053 + RMER17C LTR ERVK 3 378 -32 7 1267 765 271 132 28 chr6 89473333 89473720 -60043317 - L1M3 LINE L1 -1783 4357 3931 7 1267 529 285 87 50 chr6 89473727 89474078 -60042959 + L1MA9 LINE L1 5855 6210 -102 7 1267 203 186 51 0 chr6 89476791 89476850 -60040187 + T-rich Low_complexity Low_complexity 3 64 0 7 1267 261 202 98 68 chr6 89476852 89476985 -60040052 - MER113 DNA MER1_type -94 427 291 7 1267 192 77 0 0 chr6 89477284 89477310 -60039727 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1267 38571 30 2 0 chr6 89477384 89484257 -60032780 - L1Md_T LINE L1 0 6585 1 7 1267 883 232 88 62 chr6 89484354 89484732 -60032305 + MT2A LTR ERVL 6 487 -114 7 1267 567 205 58 27 chr6 89484724 89484883 -60032154 - MT2A LTR ERVL -162 313 95 7 1267 237 163 0 23 chr6 89484891 89484935 -60032102 - MT2A LTR ERVL -409 124 82 7 1267 408 185 67 30 chr6 89484942 89485076 -60031961 + Lx2B LINE L1 6862 7000 0 7 1267 381 150 100 0 chr6 89485096 89485176 -60031861 - MT2A LTR ERVL -445 88 1 7 1267 307 115 58 0 chr6 89485176 89485228 -60031809 - MERVL_2A-int LTR ERVL -1 5760 5706 7 1267 286 209 53 42 chr6 89485228 89485323 -60031714 - ORR1A3-int LTR MaLR -1324 639 544 7 1267 6701 157 28 30 chr6 89485335 89485435 -60031602 - MERVL_2A-int LTR ERVL -189 5572 5483 7 1267 297 0 0 0 chr6 89485435 89485468 -60031569 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1267 989 53 0 147 chr6 89485469 89485625 -60031412 - B1_Mus2 SINE Alu -12 135 3 7 1267 6701 157 28 30 chr6 89485625 89486667 -60030370 - MERVL_2A-int LTR ERVL -279 5482 4430 7 1267 369 0 0 0 chr6 89488331 89488372 -60028665 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1267 23 33 0 0 chr6 89488406 89488436 -60028601 + AT_rich Low_complexity Low_complexity 1 30 0 7 1267 231 277 134 63 chr6 89488445 89488572 -60028465 + L1MDa LINE L1 37 172 -6461 7 1267 2032 209 180 2 chr6 89488708 89489268 -60027769 + RCHARR1 DNA MER1_type 78 737 -237 7 1267 662 310 94 26 chr6 89489326 89489591 -60027446 - B4A SINE B4 0 292 10 7 1267 551 151 8 16 chr6 89489601 89489729 -60027308 + RCHARR1 DNA MER1_type 780 906 -68 7 1267 227 241 339 0 chr6 89489949 89490061 -60026976 + MLT1G LTR MaLR 268 417 -174 7 1267 284 284 34 8 chr6 89490108 89490225 -60026812 + L1M4c LINE L1 1218 1337 -5270 7 1267 462 277 116 35 chr6 89490279 89490623 -60026414 + L1M4c LINE L1 1481 1852 -4897 7 1267 278 176 118 37 chr6 89490900 89491036 -60026001 + L1M4c LINE L1 2295 2441 -4308 7 1267 1493 114 58 0 chr6 89491096 89491376 -60025661 - ORR1A2 LTR MaLR -8 321 1 7 1267 455 177 58 47 chr6 89491464 89491617 -60025420 + L1M4c LINE L1 2722 2882 -3865 7 1267 1313 263 139 38 chr6 89491820 89492618 -60024419 + L1M4c LINE L1 3678 4556 -2191 7 1267 263 54 0 0 chr6 89492646 89492683 -60024354 + ORR1B1 LTR MaLR 1 37 -357 7 1267 464 142 197 20 chr6 89492736 89492861 -60024176 - ORR1C1 LTR MaLR -162 222 79 7 1267 7669 60 4 6 chr6 89492872 89494368 -60022669 - L1Md_F2 LINE L1 -1 6581 5091 7 1267 394 162 14 0 chr6 89494369 89494443 -60022594 - ORR1C1 LTR MaLR -303 75 1 7 1267 278 269 248 0 chr6 89494480 89494621 -60022416 + L1M4c LINE L1 4640 4815 -1932 7 1267 333 292 0 20 chr6 89494640 89494738 -60022299 + PB1D10 SINE Alu 5 100 -17 7 1267 310 267 11 11 chr6 89494741 89494832 -60022205 + GA-rich Low_complexity Low_complexity 3 93 0 7 1267 466 329 58 46 chr6 89494836 89495097 -60021940 + MLT1C LTR MaLR 204 467 0 7 1267 247 236 97 43 chr6 89495097 89495190 -60021847 + L1M4c LINE L1 5156 5253 -1488 7 1267 1287 270 54 107 chr6 89495229 89495780 -60021257 + MT2A LTR ERVL 1 522 -11 7 1267 1004 238 77 10 chr6 89495811 89496154 -60020883 + L1M4c LINE L1 5322 5689 -1052 7 1267 1137 192 218 33 chr6 89496174 89496481 -60020556 - ORR1C1 LTR MaLR -14 364 1 7 1267 394 234 0 0 chr6 89496651 89496728 -60020309 + ID_B1 SINE B4 81 157 -67 7 1267 227 31 0 30 chr6 89496774 89496807 -60020230 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1267 570 276 101 52 chr6 89496807 89497072 -60019965 + L1M4c LINE L1 5877 6164 -621 7 1267 830 244 38 28 chr6 89497072 89497283 -60019754 + B3 SINE B2 1 213 -3 7 1267 570 276 101 52 chr6 89497283 89497345 -60019692 + L1M4c LINE L1 6165 6220 -565 7 1267 572 239 195 14 chr6 89497381 89497651 -60019386 + L1MB3 LINE L1 5781 6117 -54 7 1267 329 248 37 56 chr6 89497715 89497822 -60019215 + PB1 SINE Alu 15 119 -8 7 1267 311 336 16 8 chr6 89497979 89498108 -60018929 + L1MC4 LINE L1 7479 7608 -434 7 1267 270 0 0 0 chr6 89498992 89499022 -60018015 + (TTA)n Simple_repeat Simple_repeat 2 31 0 7 1267 181 244 163 0 chr6 89500455 89500541 -60016496 + MIRc SINE MIR 120 219 -49 1 1267 183 293 100 46 chr6 89504879 89505119 -60011918 + L2c LINE L2 3019 3271 -116 2 1267 233 228 38 47 chr6 89508650 89508756 -60008281 + RMER17A2 LTR ERVK 244 348 -558 3 1267 758 250 23 11 chr6 89510951 89511125 -60005912 + B3A SINE B2 3 178 -20 4 1267 351 179 0 0 chr6 89511143 89511210 -60005827 + CT-rich Low_complexity Low_complexity 2 68 0 5 1267 378 0 0 0 chr6 89511228 89511270 -60005767 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1267 207 0 0 0 chr6 89511278 89511301 -60005736 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1267 483 216 30 128 chr6 89511371 89511504 -60005533 + B1F SINE Alu 1 120 0 8 1267 247 237 0 33 chr6 89511642 89511703 -60005334 + MER58B DNA MER1_type 268 326 -15 9 1267 180 0 0 0 chr6 89512069 89512089 -60004948 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1267 1102 76 14 0 chr6 89512089 89512234 -60004803 - B1_Mus2 SINE Alu 0 147 1 1 1267 600 213 39 8 chr6 89512269 89512397 -60004640 - RSINE1 SINE B4 -12 153 22 1 1267 389 244 137 17 chr6 89512421 89512538 -60004499 - B1F SINE Alu -7 142 12 1 1267 1004 123 116 141 chr6 89512699 89512953 -60004084 - RMER4A LTR ERVK -2 464 207 1 1267 297 0 0 0 chr6 89512953 89512986 -60004051 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1267 1004 123 116 141 chr6 89512986 89513015 -60004022 - RMER4A LTR ERVK -260 206 188 1 1267 188 308 54 40 chr6 89513652 89513801 -60003236 + L2b LINE L2 3066 3216 -159 1 1267 556 183 0 23 chr6 89513913 89514042 -60002995 + GA-rich Low_complexity Low_complexity 2 127 0 1 1267 234 0 0 0 chr6 89519474 89519500 -59997537 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1267 398 326 90 69 chr6 89519863 89520209 -59996828 + MLT1A0 LTR MaLR 1 353 -12 1 1267 10365 39 1 2 chr6 89520508 89521754 -59995283 + L1Md_F2 LINE L1 4343 5586 -297 2 158 6903 96 12 26 chr6 89521754 89522764 -59994273 + L1Md_F2 LINE L1 5587 6582 0 2 1268 204 132 26 0 chr6 89523727 89523765 -59993272 + A-rich Low_complexity Low_complexity 2 40 0 2 1268 636 157 198 0 chr6 89525505 89525626 -59991411 + B1_Mus2 SINE Alu 3 147 0 2 1268 1541 172 40 94 chr6 89525986 89526390 -59990647 + ORR1B1 LTR MaLR 13 394 0 2 1268 31 44 0 0 chr6 89526479 89526524 -59990513 + AT_rich Low_complexity Low_complexity 1 45 0 2 1268 1348 105 16 10 chr6 89526834 89527027 -59990010 + B2_Mm2 SINE B2 2 195 0 2 1268 2268 110 26 18 chr6 89527108 89527496 -59989541 + RLTR11B LTR ERVK 2 392 -61 2 1268 895 130 25 0 chr6 89527460 89527621 -59989416 - RLTR11B LTR ERVK -288 165 1 2 1268 216 0 0 0 chr6 89527716 89527740 -59989297 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2 1268 903 274 90 2 chr6 89527772 89528182 -59988855 + L1MB8 LINE L1 4869 5314 -832 2 1268 267 339 90 66 chr6 89528198 89528533 -59988504 + ORR1E LTR MaLR 1 343 -16 3 1268 1146 293 73 36 chr6 89528547 89529188 -59987849 + L1MB8 LINE L1 5322 5986 -192 2 1268 455 125 0 24 chr6 89529242 89529324 -59987713 + (GGGAA)n Simple_repeat Simple_repeat 5 84 0 3 1268 258 294 0 86 chr6 89529783 89529876 -59987161 + MER63D DNA AcHobo 303 387 -674 3 1268 354 258 158 0 chr6 89530411 89530531 -59986506 + MIRb SINE MIR 19 157 -111 3 1268 198 0 0 0 chr6 89530578 89530600 -59986437 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1268 374 292 145 23 chr6 89531549 89531763 -59985274 + L2a LINE L2 3182 3421 -5 3 1268 274 255 63 11 chr6 89531814 89531909 -59985128 - MTEa LTR MaLR -2 377 278 3 1268 1040 238 160 12 chr6 89531994 89532326 -59984711 + MTD LTR MaLR 39 419 0 3 1268 935 220 145 96 chr6 89533556 89534021 -59983016 + MT2B LTR ERVL 1 569 -32 3 1268 1451 139 9 5 chr6 89534021 89534245 -59982792 - URR1B DNA MER1_type 0 225 1 3 1268 935 216 132 21 chr6 89534245 89534269 -59982768 + MT2B LTR ERVL 570 600 -1 3 1268 290 271 87 60 chr6 89535370 89535519 -59981518 - Charlie8 DNA MER1_type -2203 225 73 4 1268 213 242 86 57 chr6 89536193 89536263 -59980774 + ID4 SINE ID 2 73 -10 4 1268 261 118 0 0 chr6 89536665 89536716 -59980321 + (A)n Simple_repeat Simple_repeat 1 51 0 4 1268 751 268 230 7 chr6 89536722 89537026 -59980011 - MTD LTR MaLR 0 419 48 4 1268 499 237 92 2 chr6 89538397 89538548 -59978489 + L1MB7 LINE L1 3998 4160 -1986 4 1268 447 241 18 9 chr6 89538548 89538657 -59978380 + RSINE1 SINE B4 3 112 -53 4 1268 387 0 0 0 chr6 89538657 89538700 -59978337 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1268 402 21 0 0 chr6 89538700 89538746 -59978291 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1268 739 287 107 89 chr6 89538758 89539073 -59977964 + L1MB7 LINE L1 4217 4559 -1587 4 1268 427 303 160 19 chr6 89539073 89539329 -59977708 + B4A SINE B4 1 292 0 4 1268 739 287 107 89 chr6 89539329 89539739 -59977298 + L1MB7 LINE L1 4560 4955 -1191 4 1268 546 242 162 33 chr6 89539952 89540443 -59976594 + L1MB7 LINE L1 4969 5505 -673 4 1268 468 51 0 0 chr6 89540590 89540649 -59976388 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 4 1268 734 78 0 9 chr6 89540700 89540806 -59976231 + B1_Mus1 SINE Alu 34 139 -9 5 1268 242 0 61 0 chr6 89540806 89540839 -59976198 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1268 450 254 104 100 chr6 89540849 89540994 -59976043 + L1MB7 LINE L1 5731 5850 -334 4 1268 1084 210 29 5 chr6 89540994 89541200 -59975837 + B3 SINE B2 2 212 -4 5 1268 450 254 104 100 chr6 89541200 89541230 -59975807 + L1MB7 LINE L1 5851 5867 -317 4 1268 230 235 162 0 chr6 89541230 89541298 -59975739 + ID4 SINE ID 4 82 -1 5 1268 450 254 104 100 chr6 89541298 89541572 -59975465 + L1MB7 LINE L1 5868 6183 -1 4 1268 243 0 0 0 chr6 89541577 89541604 -59975433 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1268 212 140 39 39 chr6 89542096 89542148 -59974889 + T-rich Low_complexity Low_complexity 3 54 0 5 1268 207 0 0 0 chr6 89543006 89543029 -59974008 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 5 1268 440 302 169 0 chr6 89543490 89543662 -59973375 + B3 SINE B2 1 201 -15 5 1268 291 28 0 0 chr6 89544070 89544106 -59972931 + (TC)n Simple_repeat Simple_repeat 1 36 0 5 1268 241 292 82 30 chr6 89544344 89544478 -59972559 + MIR SINE MIR 3 143 -119 5 1268 347 210 94 57 chr6 89544492 89544598 -59972439 + PB1D9 SINE Alu 10 119 -1 6 1268 184 114 143 0 chr6 89544863 89544898 -59972139 - L2c LINE L2 -226 3161 3122 6 1268 1012 173 140 44 chr6 89546163 89546422 -59970615 - RLTR24 LTR ERV1 0 529 240 6 1268 1221 180 232 37 chr6 89546422 89546483 -59970554 - ORR1B1 LTR MaLR -2 392 324 6 1268 791 152 27 27 chr6 89546483 89546632 -59970405 + B1_Mur3 SINE Alu 1 149 0 6 1268 1221 180 232 37 chr6 89546632 89546898 -59970139 - ORR1B1 LTR MaLR -71 323 1 6 1268 1012 173 140 44 chr6 89546898 89546910 -59970127 - RLTR24 LTR ERV1 -290 239 232 6 1268 391 256 25 25 chr6 89546910 89547030 -59970007 - RLTR23 LTR ERV1 0 430 311 6 1268 238 133 0 43 chr6 89547408 89547455 -59969582 - RLTR24 LTR ERV1 -295 234 190 6 1268 929 150 11 17 chr6 89547495 89547671 -59969366 - RLTR12B LTR ERVK 0 528 354 6 1268 722 109 146 0 chr6 89547671 89547808 -59969229 - RLTR12B LTR ERVK -371 157 1 6 1268 1261 145 5 9 chr6 89547808 89548030 -59969007 - RLTR24 LTR ERV1 -308 221 1 6 1268 1971 254 128 53 chr6 89548243 89548690 -59968347 - RLTR19-int LTR ERVK -1756 4381 3926 6 1268 252 0 0 0 chr6 89548690 89548718 -59968319 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 6 1268 1971 254 128 53 chr6 89548718 89549115 -59967922 - RLTR19-int LTR ERVK -2212 3925 3476 6 1268 1031 266 69 145 chr6 89549789 89550057 -59966980 - RLTR19-int LTR ERVK -2857 3280 3053 6 1268 5275 148 55 29 chr6 89550057 89551015 -59966022 - RLTR13C1 LTR ERVK 0 983 1 6 1268 1031 266 69 145 chr6 89551015 89551669 -59965368 - RLTR19-int LTR ERVK -3085 3052 2429 6 1268 1277 164 5 0 chr6 89551857 89552076 -59964961 - RLTR14 LTR ERV1 -116 266 47 7 1268 1700 151 32 44 chr6 89552153 89552493 -59964544 + RLTR24 LTR ERV1 194 529 0 7 1268 395 238 147 0 chr6 89552699 89552842 -59964195 + L1MA9 LINE L1 4451 4614 -1526 7 1268 770 282 19 0 chr6 89552868 89553077 -59963960 - B3 SINE B2 -3 213 1 7 1268 958 259 104 11 chr6 89553552 89553969 -59963068 + L1MA9 LINE L1 4674 5151 -992 7 1268 765 234 15 3 chr6 89553969 89554153 -59962884 + B3 SINE B2 8 197 -1 7 1268 397 292 71 0 chr6 89554192 89554305 -59962732 + RSINE1 SINE B4 5 125 -40 7 1268 2430 31 10 3 chr6 89554338 89554632 -59962405 - L1Md_F3 LINE L1 -1 6583 6288 7 1268 366 23 0 0 chr6 89554704 89554747 -59962290 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1268 712 253 110 56 chr6 89554764 89555199 -59961838 + L1MA9 LINE L1 5146 5593 -698 7 1268 402 21 0 0 chr6 89555224 89555271 -59961766 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1268 387 213 191 18 chr6 89555530 89555640 -59961397 - B1_Mur1 SINE Alu -2 147 19 7 1268 479 180 22 0 chr6 89555643 89555732 -59961305 + B3 SINE B2 118 208 -8 8 1268 319 202 225 0 chr6 89555769 89555898 -59961139 + L1MA9 LINE L1 6150 6307 -5 7 1268 345 197 65 13 chr6 89556444 89556521 -59960516 - ID4 SINE ID -2 81 1 8 1268 274 171 0 0 chr6 89556782 89556823 -59960214 + L1MC4 LINE L1 6962 7002 -1040 8 1268 414 262 218 11 chr6 89556835 89557009 -59960028 + B3 SINE B2 1 210 -6 8 1268 348 311 96 7 chr6 89557126 89557262 -59959775 - RSINE1 SINE B4 -16 149 2 8 1268 1227 99 48 37 chr6 89557268 89557456 -59959581 - B2_Mm2 SINE B2 -5 190 1 8 1268 459 331 25 0 chr6 89557544 89557701 -59959336 - RSINE1 SINE B4 -2 163 3 8 1268 235 211 25 107 chr6 89557702 89557824 -59959213 + L1MC4 LINE L1 7107 7218 -743 8 1268 433 230 201 29 chr6 89558155 89558294 -59958743 - B2_Mm2 SINE B2 -32 163 1 8 1268 565 282 43 29 chr6 89558485 89558693 -59958344 - B3 SINE B2 -5 211 1 8 1268 257 297 32 42 chr6 89558701 89558796 -59958241 + L1MC4 LINE L1 7809 7902 -140 8 1268 409 318 50 15 chr6 89559272 89559470 -59957567 + L1M4 LINE L1 4045 4249 -1897 9 1268 810 235 162 27 chr6 89559872 89560169 -59956868 - Lx8 LINE L1 -2 7471 7135 9 1268 210 37 0 0 chr6 89560198 89560225 -59956812 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 9 1268 638 269 0 0 chr6 89560225 89560355 -59956682 - ID_B1 SINE B4 -13 211 82 9 1268 676 187 24 0 chr6 89560473 89560596 -59956441 - RSINE1 SINE B4 -36 129 4 9 1268 1454 266 120 89 chr6 89560769 89561209 -59955828 - L1MA5A LINE L1 -287 6010 5520 9 1268 899 198 32 5 chr6 89561209 89561397 -59955640 - B3A SINE B2 -1 197 5 9 1268 1454 292 104 70 chr6 89561397 89562168 -59954869 - L1MA5A LINE L1 -328 5519 4690 9 1268 1320 122 23 18 chr6 89562215 89562432 -59954605 + URR1B DNA MER1_type 8 225 0 9 1268 626 180 21 7 chr6 89562455 89562595 -59954442 - L1M2 LINE L1 -1462 4681 4540 9 1268 231 300 120 23 chr6 89563590 89563723 -59953314 - MLT1L LTR MaLR -335 275 130 9 1268 447 68 0 0 chr6 89563870 89563929 -59953108 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1268 255 31 0 0 chr6 89564466 89564498 -59952539 + (TGGGGG)n Simple_repeat Simple_repeat 1 32 0 1 1268 470 17 17 0 chr6 89564508 89564567 -59952470 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 1268 191 310 56 14 chr6 89564793 89564865 -59952172 + L2a LINE L2 3350 3424 -2 1 1268 2409 162 51 25 chr6 89566094 89566543 -59950494 - RMER4A LTR ERVK 0 466 6 1 1268 216 97 0 0 chr6 89566580 89566611 -59950426 + (TTCCC)n Simple_repeat Simple_repeat 2 32 0 1 1268 585 249 84 38 chr6 89566611 89566824 -59950213 - ID_B1 SINE B4 -1 223 1 1 1268 368 312 131 44 chr6 89567287 89567763 -59949274 - L1ME4a LINE L1 -113 6011 5266 1 1268 909 232 68 0 chr6 89567771 89567961 -59949076 + B3 SINE B2 1 203 -13 1 1268 308 260 69 104 chr6 89567963 89568032 -59949005 - B2_Mm2 SINE B2 0 195 133 1 1268 354 98 0 0 chr6 89568032 89568083 -59948954 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1268 576 204 137 12 chr6 89568083 89568215 -59948822 - B3A SINE B2 -64 134 1 1 1268 243 0 0 0 chr6 89568483 89568510 -59948527 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 1 1268 4883 209 69 15 chr6 89568511 89569536 -59947501 - Lx5 LINE L1 -16 7034 5954 1 1268 949 169 214 0 chr6 89569542 89569720 -59947317 - B3 SINE B2 0 216 1 1 1268 313 309 100 47 chr6 89569756 89569926 -59947111 - L1ME4a LINE L1 -1296 4850 4672 1 1268 617 250 14 14 chr6 89570170 89570312 -59946725 - ID_B1 SINE B4 -2 222 81 1 1268 594 223 165 6 chr6 89570486 89570644 -59946393 - B3A SINE B2 -15 183 1 1 1268 8129 60 1 2 chr6 89570677 89571856 -59945181 - L1Md_F2 LINE L1 0 6582 5406 1 1268 3469 67 0 11 chr6 89571857 89572310 -59944727 + L1Md_F2 LINE L1 4952 5399 -484 1 1268 444 160 89 10 chr6 89572624 89572725 -59944312 + MTD LTR MaLR 1 109 -310 1 1268 1842 164 32 81 chr6 89572727 89573099 -59943938 + ORR1B1 LTR MaLR 41 394 0 1 1268 866 188 305 5 chr6 89573101 89573304 -59943733 + MTD LTR MaLR 100 363 -56 1 1268 2474 240 88 38 chr6 89573551 89573654 -59943383 - L1MC1 LINE L1 -2 6331 6221 1 1268 180 0 0 0 chr6 89573654 89573674 -59943363 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1268 2474 240 88 38 chr6 89573674 89574413 -59942624 - L1MC1 LINE L1 -113 6220 5447 1 1268 393 138 58 81 chr6 89574943 89575030 -59942007 + PB1D10 SINE Alu 24 108 -9 1 1268 982 232 28 132 chr6 89575036 89575459 -59941578 - MTE2a LTR MaLR 0 379 1 1 1268 242 203 51 89 chr6 89575717 89575874 -59941163 - L1MEe LINE L1 -3922 932 782 1 1268 282 247 38 38 chr6 89575879 89575959 -59941078 - ID4 SINE ID -1 82 3 1 1268 591 233 93 11 chr6 89576426 89576608 -59940429 + B3A SINE B2 2 198 0 1 1268 315 167 91 0 chr6 89576642 89576708 -59940329 - ID4 SINE ID -11 72 1 1 1268 225 306 27 9 chr6 89576857 89576969 -59940068 - HAL1 LINE L1 -854 1653 1540 1 1268 291 267 57 32 chr6 89576972 89577096 -59939941 - HAL1 LINE L1 -1161 1346 1220 1 1268 452 250 9 19 chr6 89577131 89577237 -59939800 - PB1 SINE Alu -8 119 15 1 1268 384 292 5 119 chr6 89577143 89577345 -59939692 - ID_B1 SINE B4 -45 179 1 1 1268 985 167 116 6 chr6 89577386 89577567 -59939470 - B3 SINE B2 -11 205 5 1 1268 184 278 68 14 chr6 89579117 89579190 -59937847 + L2b LINE L2 3297 3373 -2 1 1268 958 212 16 0 chr6 89579721 89579905 -59937132 - B3A SINE B2 -11 187 1 1 1268 28 29 0 0 chr6 89579905 89579940 -59937097 + AT_rich Low_complexity Low_complexity 1 35 0 1 1268 369 266 109 49 chr6 89580036 89580302 -59936735 - L1_Mus2 LINE L1 -598 5968 5699 1 1268 212 306 70 0 chr6 89581697 89581805 -59935232 + MIRm SINE MIR 96 214 -48 1 1268 366 172 16 0 chr6 89582722 89582786 -59934251 - ID4_ SINE ID -16 67 3 1 1268 604 314 155 22 chr6 89583701 89584023 -59933014 + MLT1H LTR MaLR 3 367 -182 1 1268 361 332 120 25 chr6 89584393 89584677 -59932360 - HAL1 LINE L1 -678 1829 1519 1 1268 306 0 0 0 chr6 89584975 89585009 -59932028 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1268 914 181 160 22 chr6 89585027 89585208 -59931829 + B3 SINE B2 7 212 -4 1 1268 201 152 0 0 chr6 89585316 89585349 -59931688 + CT-rich Low_complexity Low_complexity 3 35 0 1 1268 369 0 0 0 chr6 89585349 89585390 -59931647 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1268 895 219 51 0 chr6 89585442 89585638 -59931399 - B3 SINE B2 -6 210 5 1 1268 348 24 0 0 chr6 89585672 89585713 -59931324 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1268 316 328 51 22 chr6 89585867 89586045 -59930992 - L1MB8 LINE L1 0 6178 5996 1 1268 237 350 15 89 chr6 89586310 89586445 -59930592 + ORR1E LTR MaLR 56 180 -179 1 1268 1236 257 97 6 chr6 89586524 89586576 -59930461 - MTE2b LTR MaLR -5 374 317 1 1268 582 15 0 0 chr6 89586576 89586643 -59930394 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 1 1268 1236 257 97 6 chr6 89586643 89586931 -59930106 - MTE2b LTR MaLR -63 316 4 1 1268 263 225 55 27 chr6 89587329 89587402 -59929635 - MTEa LTR MaLR -28 351 277 1 1268 291 302 58 64 chr6 89588211 89588384 -59928653 - L2b LINE L2 -6 3369 3198 1 1268 2160 206 48 27 chr6 89588483 89588536 -59928501 - MT2A LTR ERVL -6 527 479 1 1268 306 0 0 0 chr6 89588536 89588570 -59928467 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 1 1268 2160 206 48 27 chr6 89588570 89589031 -59928006 - MT2A LTR ERVL -55 478 2 1 1268 350 264 143 59 chr6 89589631 89589864 -59927173 + MTEa LTR MaLR 111 379 0 1 1268 766 202 42 52 chr6 89590180 89590373 -59926664 + Lx7 LINE L1 6646 6836 -860 1 1268 3741 146 153 50 chr6 89590373 89591229 -59925808 - RMER17B LTR ERVK 0 958 15 1 1268 1266 193 57 28 chr6 89591251 89591534 -59925503 + Lx7 LINE L1 6831 7121 -575 1 1268 364 286 33 0 chr6 89591537 89591628 -59925409 + RCHARR1 DNA MER1_type 3 96 -878 1 1268 773 273 37 0 chr6 89591629 89591816 -59925221 + B3 SINE B2 1 194 -22 1 1268 3659 202 59 26 chr6 89591841 89592694 -59924343 + RCHARR1 DNA MER1_type 86 966 -8 1 1268 1613 192 119 11 chr6 89593079 89593457 -59923580 - MTD LTR MaLR 0 419 1 1 1268 293 232 14 14 chr6 89595471 89595541 -59921496 + PB1D10 SINE Alu 42 111 -6 1 1268 276 297 136 51 chr6 89595553 89595755 -59921282 + B4 SINE B4 39 270 -22 1 1268 456 233 15 61 chr6 89596056 89596180 -59920857 - B1F SINE Alu -29 120 1 1 1268 247 247 67 27 chr6 89596920 89596995 -59920042 - PB1D10 SINE Alu -10 107 30 1 1268 339 25 0 0 chr6 89598272 89598312 -59918725 + (CCA)n Simple_repeat Simple_repeat 3 42 0 1 1268 946 296 94 14 chr6 89598319 89598679 -59918358 - L1MB3 LINE L1 -119 6064 5676 1 1268 1325 157 9 22 chr6 89598761 89598983 -59918054 + URR1B DNA MER1_type 7 225 0 1 1268 982 278 276 5 chr6 89599021 89599579 -59917458 - L1M4b LINE L1 -6523 811 103 1 1268 201 340 19 19 chr6 89600061 89600169 -59916868 + L2a LINE L2 3314 3421 -5 1 1268 375 60 0 0 chr6 89601857 89601907 -59915130 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1268 263 226 0 0 chr6 89602414 89602475 -59914562 + ID4_ SINE ID 8 68 -15 1 1268 269 260 0 25 chr6 89603874 89603953 -59913084 - B2_Mm2 SINE B2 -103 92 16 1 1268 188 288 54 92 chr6 89603956 89604086 -59912951 - L3 LINE CR1 -1210 3279 3155 1 1268 513 141 0 0 chr6 89604828 89604913 -59912124 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1268 304 317 0 39 chr6 89606603 89606731 -59910306 - PB1 SINE Alu -2 125 3 1 1268 180 244 67 0 chr6 89607082 89607127 -59909910 - L4 LINE RTE -1352 677 630 1 1268 252 86 0 0 chr6 89609468 89609503 -59907534 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 1 1268 417 194 151 0 chr6 89611300 89611393 -59905644 + PB1D10 SINE Alu 3 109 -8 1 1268 371 275 154 41 chr6 89612596 89612816 -59904221 - MTD LTR MaLR -76 343 99 1 1268 203 133 43 22 chr6 89613804 89613850 -59903187 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1268 1025 192 33 51 chr6 89613928 89614142 -59902895 - B3 SINE B2 -6 210 1 1 1268 423 107 0 0 chr6 89616514 89616589 -59900448 + (TCTCTG)n Simple_repeat Simple_repeat 6 80 0 1 1268 1369 186 156 14 chr6 89616762 89617127 -59899910 + MTD LTR MaLR 3 419 0 1 1268 219 289 13 13 chr6 89617519 89617596 -59899441 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1268 658 239 14 7 chr6 89617611 89617754 -59899283 - B1F1 SINE Alu -5 144 1 1 1268 259 225 36 36 chr6 89618016 89618099 -59898938 - L1M4 LINE L1 -2727 3419 3337 1 1268 268 319 8 25 chr6 89618116 89618238 -59898799 - L1ME2z LINE L1 -326 6118 5999 1 1268 299 244 51 17 chr6 89618527 89618644 -59898393 - ORR1E LTR MaLR -217 142 22 1 1268 269 261 74 25 chr6 89618658 89618780 -59898257 - MLT1B LTR MaLR -252 138 11 1 1268 825 216 196 38 chr6 89618812 89619129 -59897908 + MTE2b LTR MaLR 1 367 -12 1 1268 247 273 34 0 chr6 89619190 89619278 -59897759 - L1MD LINE L1 -2790 3356 3266 1 1268 268 260 0 0 chr6 89619992 89620065 -59896972 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1268 303 246 0 0 chr6 89620079 89620189 -59896848 + (TG)n Simple_repeat Simple_repeat 1 110 0 1 1268 330 26 0 0 chr6 89620220 89620259 -59896778 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1268 245 109 22 0 chr6 89620259 89620304 -59896733 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1268 610 306 78 11 chr6 89621487 89621749 -59895288 + B4A SINE B4 6 284 -8 1 1268 339 25 0 0 chr6 89621755 89621795 -59895242 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1268 721 246 11 39 chr6 89621809 89621991 -59895046 + B3 SINE B2 40 216 0 1 1268 276 100 0 0 chr6 89624237 89624277 -59892760 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1268 783 267 82 19 chr6 89624280 89624536 -59892501 - B4 SINE B4 -19 273 2 1 1268 500 213 0 36 chr6 89625528 89625640 -59891397 - PB1D10 SINE Alu 0 117 10 1 1268 235 227 0 96 chr6 89625589 89625662 -59891375 - B4 SINE B4 -147 145 80 1 1268 189 0 0 0 chr6 89625896 89625917 -59891120 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 2 1268 1111 193 24 19 chr6 89626400 89626611 -59890426 - B3 SINE B2 -4 212 1 2 1268 320 268 43 21 chr6 89626785 89626926 -59890111 - L1MEf LINE L1 -4677 1738 1595 2 1268 237 195 105 105 chr6 89627178 89627264 -59889773 - Tigger7 DNA MER2_type -1986 505 420 2 1268 344 187 67 0 chr6 89627471 89627546 -59889491 - Tigger7 DNA MER2_type -2384 107 28 2 1268 318 217 109 36 chr6 89627567 89627677 -59889360 - L1MEf LINE L1 -4921 1494 1298 2 1268 573 121 0 0 chr6 89628033 89628116 -59888921 - B2_Mm2 SINE B2 -112 83 1 2 1268 309 82 0 0 chr6 89629846 89629895 -59887142 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 2 1268 211 301 31 31 chr6 89630175 89630271 -59886766 - MIR SINE MIR -142 120 25 2 1268 252 0 0 0 chr6 89630755 89630783 -59886254 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1268 240 86 0 0 chr6 89631115 89631150 -59885887 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1268 2004 156 50 103 chr6 89631158 89631320 -59885717 - BGLII_B LTR ERVK 0 441 320 2 1268 1186 55 0 0 chr6 89631320 89631466 -59885571 - B1_Mus2 SINE Alu -1 146 1 2 1268 2004 156 50 103 chr6 89631466 89631768 -59885269 - BGLII_B LTR ERVK -122 319 2 2 1268 7055 152 37 22 chr6 89631771 89632695 -59884342 - MYSERV16_I-int LTR ERVK -1 2325 1363 2 1268 3147 44 29 3 chr6 89632695 89633081 -59883956 - MTA_Mm LTR MaLR 0 396 1 2 1268 7055 152 37 22 chr6 89633081 89633143 -59883894 - MYSERV16_I-int LTR ERVK -964 1362 1311 2 1268 1370 94 16 0 chr6 89633143 89633335 -59883702 - B2_Mm2 SINE B2 0 195 1 2 1268 7055 152 37 22 chr6 89633335 89633655 -59883382 - MYSERV16_I-int LTR ERVK -1016 1310 999 2 1268 247 188 141 0 chr6 89633655 89633719 -59883318 - RMER4A LTR ERVK -84 382 310 2 1268 450 204 19 0 chr6 89633726 89633834 -59883203 - MYSERV16_I-int LTR ERVK -1406 920 811 2 1268 3000 189 61 14 chr6 89633815 89634535 -59882502 - MYSERV16_I-int LTR ERVK -18 2308 1555 2 1268 568 194 7 79 chr6 89634536 89634676 -59882361 + MYSERV16_I-int LTR ERVK 321 450 -1876 2 1268 1916 142 3 3 chr6 89634680 89634999 -59882038 - ORR1A2 LTR MaLR -8 319 1 2 1268 551 196 0 9 chr6 89635000 89635108 -59881929 + MYSERV16_I-int LTR ERVK 1396 1502 -1340 2 1268 701 157 60 13 chr6 89635137 89635286 -59881751 + MYSERV16_I-int LTR ERVK 639 794 -1532 2 1268 3891 47 0 0 chr6 89635290 89635759 -59881278 + L1Md_F2 LINE L1 6114 6582 0 2 1268 1343 148 0 0 chr6 89635775 89635985 -59881052 - MYSERV6-int LTR ERVK -4933 4026 3817 2 1268 207 0 0 0 chr6 89635999 89636022 -59881015 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2 1268 7535 68 3 14 chr6 89636037 89636999 -59880038 - L1_Mus1 LINE L1 0 6567 5616 2 1268 5524 261 71 41 chr6 89636999 89638940 -59878097 - MYSERV6-int LTR ERVK -6509 2450 452 2 1268 21 0 0 0 chr6 89639450 89639471 -59877566 + AT_rich Low_complexity Low_complexity 1 21 0 2 1268 41826 14 4 6 chr6 89639471 89646434 -59870603 - L1Md_A LINE L1 -2 6580 1 2 1268 22 35 0 0 chr6 89646520 89646549 -59870488 + AT_rich Low_complexity Low_complexity 1 29 0 2 1268 2083 188 70 7 chr6 89647078 89647491 -59869546 - BGLII_B LTR ERVK 0 441 3 2 1268 275 261 33 22 chr6 89647506 89647596 -59869441 - RLTR23 LTR ERV1 -9 421 331 2 1268 2147 178 24 11 chr6 89647642 89648109 -59868928 + RLTR22_Mur LTR ERVK 333 805 -1043 2 1268 631 169 15 15 chr6 89648201 89648333 -59868704 + RLTR22_Mur LTR ERVK 1600 1731 -117 2 1268 457 228 36 34 chr6 89649955 89650094 -59866943 - MTD LTR MaLR -13 406 229 2 1268 212 288 31 78 chr6 89650096 89650224 -59866813 + B2_Mm2 SINE B2 55 176 -19 2 1268 2480 97 12 0 chr6 89652531 89652861 -59864176 - Lx LINE L1 -180 6474 6141 2 158 3124 104 41 4 chr6 89652861 89653354 -59863683 - RMER16 LTR ERVK 0 533 23 2 1269 9347 158 78 8 chr6 89654003 89656558 -59860479 + Lx LINE L1 3922 6653 -1 2 1269 401 204 165 9 chr6 89656953 89657062 -59859975 - ORR1D2 LTR MaLR -101 269 144 2 1269 1177 75 0 0 chr6 89658080 89658227 -59858810 - B1_Mus2 SINE Alu 0 147 1 2 1269 2104 123 0 66 chr6 89658338 89658685 -59858352 + ORR1A3 LTR MaLR 1 324 -2 2 1269 2455 158 19 61 chr6 89658685 89659416 -59857621 + ORR1A3-int LTR MaLR 1452 1963 0 2 1269 1824 167 6 55 chr6 89659416 89659759 -59857278 + ORR1A3 LTR MaLR 1 326 0 2 1269 594 0 0 0 chr6 89662169 89662235 -59854802 + (TCCC)n Simple_repeat Simple_repeat 3 68 0 2 1269 444 67 0 0 chr6 89662274 89662334 -59854703 + (TCTG)n Simple_repeat Simple_repeat 4 63 0 2 1269 1013 184 44 0 chr6 89662373 89662579 -59854458 - Lx9 LINE L1 -448 7196 6982 2 1269 246 260 39 52 chr6 89663528 89663605 -59853432 + B1_Mus1 SINE Alu 2 77 -71 2 1269 510 17 0 0 chr6 89663619 89663678 -59853359 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1269 16494 180 44 80 chr6 89666671 89669433 -59847604 - Lx5 LINE L1 0 7050 4188 2 1269 197 33 33 0 chr6 89669433 89669463 -59847574 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1269 207 0 0 0 chr6 89669463 89669485 -59847552 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1269 294 29 0 0 chr6 89669485 89669519 -59847518 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1269 16494 168 50 97 chr6 89669519 89671020 -59846017 - Lx5 LINE L1 -1690 4187 3003 2 1269 472 263 201 22 chr6 89671020 89671199 -59845838 - B3 SINE B2 -3 213 3 2 1269 16494 168 50 97 chr6 89671199 89671434 -59845603 - Lx5 LINE L1 -2875 3002 2789 2 1269 1855 255 38 86 chr6 89671434 89672074 -59844963 + RMER19C LTR ERVK 3 611 0 2 1269 16494 168 50 97 chr6 89672074 89672796 -59844241 - Lx5 LINE L1 -3089 2788 2057 2 1269 360 0 0 0 chr6 89672796 89672836 -59844201 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1269 16494 168 50 97 chr6 89672836 89672931 -59844106 - Lx5 LINE L1 -3821 2056 1956 2 1269 1438 87 0 5 chr6 89672941 89673137 -59843900 - L1Md_F2 LINE L1 -4 6578 6384 2 1269 41542 14 0 7 chr6 89673144 89679332 -59837705 - L1Md_A LINE L1 0 6582 440 2 1269 8450 42 0 0 chr6 89679334 89680926 -59836111 - L1Md_F2 LINE L1 -4 6578 4987 2 1269 8045 52 1 0 chr6 89680922 89682503 -59834534 - L1Md_F2 LINE L1 -12 6570 4987 2 1269 7781 60 10 0 chr6 89682499 89683612 -59833425 - L1Md_F2 LINE L1 -12 6570 5447 2 1269 30131 94 48 2 chr6 89683612 89689226 -59827811 - L1Md_T LINE L1 0 6582 700 2 1269 2170 150 3 0 chr6 89689256 89689602 -59827435 - L1VL4 LINE L1 -5534 768 422 2 1269 405 220 146 9 chr6 89690181 89690291 -59826746 - ORR1D2 LTR MaLR -91 279 155 2 1269 328 131 26 26 chr6 89691377 89691453 -59825584 + ORR1A4 LTR MaLR 3 81 -313 2 1269 1864 132 7 10 chr6 89691455 89691760 -59825277 + ORR1A3-int LTR MaLR 1660 1963 0 2 1269 1841 165 33 60 chr6 89691760 89692095 -59824942 + ORR1A3 LTR MaLR 1 326 0 2 1269 226 229 36 167 chr6 89692095 89692118 -59824919 + ORR1A4 LTR MaLR 67 87 -307 2 1269 2511 69 9 16 chr6 89692362 89692685 -59824352 - L1_Mus2 LINE L1 0 6566 6246 2 1269 308 141 31 0 chr6 89694585 89694649 -59822388 + CT-rich Low_complexity Low_complexity 5 70 0 2 1269 214 191 21 0 chr6 89694682 89694729 -59822308 + (TCTG)n Simple_repeat Simple_repeat 4 51 0 2 1269 558 261 52 0 chr6 89695412 89695665 -59821372 - Lx9 LINE L1 -1 7643 7350 2 1269 772 217 0 0 chr6 89695683 89695821 -59821216 + B1_Mus1 SINE Alu 5 142 -6 2 1269 450 0 0 0 chr6 89695902 89695952 -59821085 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1269 38 51 0 0 chr6 89697544 89697603 -59819434 + AT_rich Low_complexity Low_complexity 1 59 0 2 1269 216 0 0 0 chr6 89697743 89697767 -59819270 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1269 777 11 0 0 chr6 89697767 89697856 -59819181 + (GA)n Simple_repeat Simple_repeat 1 90 0 2 1269 402 343 69 7 chr6 89697859 89698003 -59819034 - B3A SINE B2 -38 160 8 2 1269 7282 102 25 3 chr6 89698916 89700023 -59817014 - L1_Mus4 LINE L1 -18 6618 5488 2 1269 273 320 115 0 chr6 89700102 89700180 -59816857 + PB1D10 SINE Alu 2 88 -29 2 1269 305 254 0 17 chr6 89700264 89700324 -59816713 + B1F2 SINE Alu 2 60 -89 2 1269 525 16 0 0 chr6 89700324 89700386 -59816651 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1269 5109 138 7 109 chr6 89701590 89703570 -59813467 - L1_Mur2 LINE L1 -381 3533 2065 2 1269 2202 52 19 77 chr6 89703570 89703882 -59813155 - RLTR1B-int LTR ERV1 -252 3047 2754 2 1269 1182 48 0 0 chr6 89703910 89704056 -59812981 - L1Md_A LINE L1 0 6582 6437 2 1269 1939 62 0 0 chr6 89704056 89704296 -59812741 + L1Md_T LINE L1 6221 6460 -122 2 1269 556 61 0 0 chr6 89704296 89704362 -59812675 - RLTR1B-int LTR ERV1 -542 2757 2692 2 1269 7418 107 95 124 chr6 89704360 89705680 -59811357 - RLTR1B-int LTR ERV1 -843 2456 1223 2 1269 486 0 0 0 chr6 89705680 89705734 -59811303 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1269 7418 107 95 124 chr6 89705734 89705925 -59811112 - RLTR1B-int LTR ERV1 -2077 1222 990 2 1269 39726 47 8 0 chr6 89705926 89712449 -59804588 - L1Md_T LINE L1 -2 6580 98 2 1269 1592 98 0 120 chr6 89712449 89712739 -59804298 - RLTR1B-int LTR ERV1 -2307 1391 1160 2 1269 445 148 123 129 chr6 89712847 89713018 -59804019 - RLTR1B-int LTR ERV1 -2567 732 563 2 1269 318 140 0 0 chr6 89713154 89713204 -59803833 - RLTR1B-int LTR ERV1 -2773 526 477 2 1269 1865 134 198 47 chr6 89713272 89713392 -59803645 - RLTR1B-int LTR ERV1 -6969 587 513 2 1269 266 0 0 29 chr6 89713392 89713427 -59803610 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1269 1865 201 81 63 chr6 89713427 89713813 -59803224 - RLTR1B-int LTR ERV1 -7044 512 122 2 1269 565 95 14 0 chr6 89713845 89713919 -59803118 + tRNA-Gln-CAG tRNA tRNA 1 75 0 2 1269 1355 123 85 0 chr6 89713921 89714133 -59802904 - RLTR1 LTR ERV1 0 624 395 2 1269 3696 140 22 7 chr6 89714133 89714763 -59802274 - ETnERV2-int LTR ERVK -2581 4663 3501 2 1269 28738 57 5 5 chr6 89714763 89716389 -59800648 - L1Md_F2 LINE L1 0 6582 4988 2 1269 327 25 0 0 chr6 89716389 89716429 -59800608 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2 1269 1952 79 51 8 chr6 89716439 89716694 -59800343 - L1Md_F2 LINE L1 -13 6569 6304 2 1269 28738 71 2 14 chr6 89716694 89719555 -59797482 - L1Md_F2 LINE L1 -896 4987 2121 2 1269 1994 167 15 18 chr6 89719547 89719885 -59797152 - L1_Mur2 LINE L1 -1680 4197 3855 2 1269 2383 112 63 78 chr6 89719885 89720284 -59796753 - RLTR9C LTR ERVK 0 393 1 2 1269 1994 167 15 18 chr6 89720284 89720335 -59796702 - L1_Mur2 LINE L1 -2023 3854 3809 2 1269 359 127 16 0 chr6 89720337 89720400 -59796637 + (TTTTC)n Simple_repeat Simple_repeat 4 67 0 2 1269 5634 134 23 22 chr6 89720400 89721272 -59795765 - Lx LINE L1 0 6654 5782 2 1269 23 0 0 0 chr6 89721310 89721333 -59795704 + AT_rich Low_complexity Low_complexity 1 23 0 2 1269 529 216 77 16 chr6 89721334 89721546 -59795491 - Lx7 LINE L1 0 7696 7364 2 1269 1534 164 0 21 chr6 89721536 89721813 -59795224 - L1_Mm LINE L1 -87 5796 5541 2 1269 1765 130 90 0 chr6 89721813 89722113 -59794924 + IAPEY3_LTR LTR ERVK 1 327 -5 2 1269 46080 102 12 7 chr6 89722120 89729733 -59787304 + IAPEY3-int LTR ERVK 3 7675 -5 2 1269 1152 159 117 0 chr6 89729734 89729948 -59787089 + IAPEY3_LTR LTR ERVK 1 239 -93 2 1269 647 121 10 0 chr6 89729960 89730059 -59786978 - IAPEY3_LTR LTR ERVK -5 327 228 2 1269 824 117 15 15 chr6 89730059 89730189 -59786848 - L1_Mm LINE L1 -334 5549 5420 2 1269 7910 159 13 1 chr6 89730172 89731492 -59785545 + L1_Mm LINE L1 4394 5729 -154 2 1269 3295 183 13 69 chr6 89731850 89732530 -59784507 - RLTR26 LTR ERVK 0 642 1 2 1269 366 23 0 0 chr6 89732563 89732606 -59784431 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1269 33232 75 3 4 chr6 89732762 89737954 -59779083 + L1Md_F2 LINE L1 303 5589 -297 2 1269 8296 56 3 8 chr6 89737954 89738955 -59778082 + L1Md_F2 LINE L1 5590 6585 0 2 1269 351 78 0 0 chr6 89740749 89740800 -59776237 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1269 329 265 150 77 chr6 89740932 89741259 -59775778 + L1MB3 LINE L1 5803 6153 -30 2 1269 7431 68 27 3 chr6 89741875 89742902 -59774135 - L1Md_F2 LINE L1 -10 6572 5521 2 1269 386 75 0 0 chr6 89742900 89742953 -59774084 - L1VL1 LINE L1 -6369 53 1 2 1269 30 45 0 0 chr6 89742954 89742998 -59774039 + AT_rich Low_complexity Low_complexity 1 44 0 3 1269 6422 96 9 9 chr6 89743006 89743871 -59773166 - L1_Mus3 LINE L1 -3 6635 5771 3 1269 16981 108 3 120 chr6 89743871 89746491 -59770546 + L1_Mm LINE L1 2991 5248 -635 3 1269 2156 104 12 51 chr6 89746491 89746826 -59770211 + RLTRETN_Mm LTR ERVK 1 322 0 3 1269 16981 108 3 120 chr6 89746826 89747308 -59769729 + L1_Mm LINE L1 5249 5731 -152 3 1269 4877 90 38 90 chr6 89747308 89747641 -59769396 + RMER17A LTR ERVK 1 342 -409 3 1269 1275 89 0 0 chr6 89747641 89747820 -59769217 + (TTCTC)n Simple_repeat Simple_repeat 1 179 0 3 1269 4877 90 38 90 chr6 89747820 89748278 -59768759 + RMER17A LTR ERVK 343 751 0 3 1269 16981 108 3 120 chr6 89748278 89748290 -59768747 + L1_Mm LINE L1 5732 5741 -142 3 1269 759 66 0 0 chr6 89748290 89748381 -59768656 + RMER17A-int LTR ERVK 13 103 -1625 3 1269 4636 51 9 9 chr6 89748379 89748956 -59768081 + RMER17A-int LTR ERVK 1152 1728 0 3 1269 4836 81 15 126 chr6 89748956 89749800 -59767237 + RMER17A LTR ERVK 1 751 0 3 1269 6694 73 2 2 chr6 89749800 89750621 -59766416 + L1_Mus1 LINE L1 5746 6566 -1 3 1269 3564 188 45 5 chr6 89750628 89751400 -59765637 - L1_Mur3 LINE L1 -1970 3910 3108 3 1269 925 252 5 0 chr6 89751525 89751731 -59765306 + Lx5 LINE L1 6377 6583 -467 3 1269 263 333 68 7 chr6 89752152 89752300 -59764737 + MIRb SINE MIR 34 190 -78 3 1269 260 361 85 32 chr6 89753371 89753624 -59763413 - B4A SINE B4 -11 281 15 3 1269 32 0 0 0 chr6 89754781 89754813 -59762224 + AT_rich Low_complexity Low_complexity 1 32 0 3 1269 24 32 0 0 chr6 89756393 89756424 -59760613 + AT_rich Low_complexity Low_complexity 1 31 0 3 1269 22 0 0 0 chr6 89756740 89756762 -59760275 + AT_rich Low_complexity Low_complexity 1 22 0 3 1269 969 272 84 41 chr6 89757192 89757537 -59759500 - MTD LTR MaLR -35 384 25 3 1269 1520 268 214 94 chr6 89757570 89758692 -59758345 - MTD-int LTR MaLR -2 1256 1 3 1269 1400 301 25 0 chr6 89758692 89759087 -59757950 - MTD LTR MaLR 0 419 15 3 1269 216 0 0 0 chr6 89759413 89759437 -59757600 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1269 226 171 0 79 chr6 89759798 89759874 -59757163 + A-rich Low_complexity Low_complexity 5 74 0 3 1269 748 234 7 0 chr6 89760287 89760432 -59756605 + B1_Mus1 SINE Alu 2 147 -1 3 1269 5878 163 18 4 chr6 89762916 89763942 -59753095 - Lx2 LINE L1 -65 6932 5893 3 1269 6235 172 24 7 chr6 89764491 89765637 -59751400 + Lx3B LINE L1 5784 6948 -25 3 1269 295 53 35 35 chr6 89765971 89766029 -59751008 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 3 1269 280 246 174 14 chr6 89766037 89766181 -59750856 - RLTR15 LTR ERVK -192 167 1 3 1269 5013 151 7 69 chr6 89766228 89767930 -59749107 + L1VL4 LINE L1 368 1876 -1941 3 1269 14595 112 11 3 chr6 89767929 89770104 -59746933 - L1_Mm LINE L1 -256 5627 3436 3 1269 7636 127 14 1 chr6 89770088 89771306 -59745731 - L1_Mm LINE L1 -3105 2778 1545 3 1269 322 332 21 8 chr6 89771335 89771476 -59745561 - MLT2B2 LTR ERVL -13 541 390 3 1269 8288 35 9 8 chr6 89771805 89773096 -59743941 - L1Md_F3 LINE L1 -12 6572 5281 3 1269 1214 248 42 16 chr6 89773096 89773408 -59743629 - RLTR46 LTR ERVK 0 320 1 3 1269 32029 112 11 18 chr6 89773408 89777966 -59739071 - MMERVK10C-int LTR ERVK 0 7581 3058 3 1269 1664 107 223 2 chr6 89777951 89778441 -59738596 - MMERVK10C-int LTR ERVK -4628 2953 2355 3 1269 740 171 243 11 chr6 89778458 89778647 -59738390 - MMERVK10C-int LTR ERVK -5464 2117 1885 3 1269 323 118 20 0 chr6 89778655 89778706 -59738331 - MMERVK10C-int LTR ERVK -4265 1141 1090 3 1269 33417 79 1 16 chr6 89778844 89784044 -59732993 + L1Md_F2 LINE L1 469 5586 -297 3 158 8209 47 2 3 chr6 89784044 89785041 -59731996 + L1Md_F2 LINE L1 5587 6582 0 3 1270 25 0 0 0 chr6 89785567 89785592 -59731445 + GC_rich Low_complexity Low_complexity 1 25 0 3 1270 492 186 0 0 chr6 89785686 89785772 -59731265 - LSU-rRNA_Hsa rRNA rRNA -4283 752 667 3 1270 332 225 148 12 chr6 89785876 89785957 -59731080 - RLTR1B-int LTR ERV1 -2374 925 834 3 1270 1262 226 35 16 chr6 89786407 89786721 -59730316 - RLTR46 LTR ERVK 0 320 1 3 1270 14842 52 4 0 chr6 89786723 89788564 -59728473 - L1Md_F LINE L1 -599 5284 3437 3 1270 2083 149 93 0 chr6 89788548 89788816 -59728221 - L1Md_F LINE L1 -4330 1553 1255 3 1270 198 0 0 0 chr6 89788816 89788838 -59728199 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3 1270 2195 165 22 127 chr6 89788838 89789070 -59727967 - L1Md_F LINE L1 -5403 1254 1078 3 1270 1086 97 0 0 chr6 89789070 89789214 -59727823 + B1_Mm SINE Alu 4 147 0 3 1270 2195 185 7 113 chr6 89789214 89789572 -59727465 - L1Md_F LINE L1 -5539 1077 725 3 1270 415 278 15 8 chr6 89789580 89789714 -59727323 - L1Md_F LINE L1 -5813 803 669 3 1270 880 279 63 107 chr6 89789915 89790501 -59726536 - L1VL1 LINE L1 -5919 503 4 3 1270 1450 151 6 99 chr6 89790607 89790939 -59726098 + ORR1A3 LTR MaLR 1 301 -25 3 1270 2384 193 10 3 chr6 89790956 89791655 -59725382 + ORR1A3-int LTR MaLR 1433 1963 0 3 1270 1527 184 6 60 chr6 89791655 89791991 -59725046 + ORR1A3 LTR MaLR 1 318 -8 3 1270 381 136 0 0 chr6 89792878 89792944 -59724093 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1270 32 0 0 0 chr6 89794370 89794402 -59722635 + AT_rich Low_complexity Low_complexity 1 32 0 3 1270 22 0 0 0 chr6 89796342 89796364 -59720673 + AT_rich Low_complexity Low_complexity 1 22 0 3 1270 693 297 71 74 chr6 89796757 89797138 -59719899 - MTD LTR MaLR -7 412 26 3 1270 183 42 0 0 chr6 89797138 89797162 -59719875 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1270 693 297 71 74 chr6 89797162 89797187 -59719850 - MTD LTR MaLR -394 25 7 3 1270 299 310 11 45 chr6 89797185 89797364 -59719673 - MTD-int LTR MaLR -6 1252 1080 3 1270 1068 188 44 22 chr6 89798770 89798998 -59718039 - Lx2 LINE L1 -78 6919 6687 3 1270 2403 165 44 0 chr6 89798980 89799410 -59717627 - Lx2 LINE L1 -656 6341 5893 3 1270 902 151 0 7 chr6 89799616 89799769 -59717268 - L1VL1 LINE L1 -1136 4747 4596 3 1270 16814 106 11 1 chr6 89799769 89803291 -59713746 - L1VL1 LINE L1 -2106 3777 217 3 1270 2034 127 0 12 chr6 89803293 89803619 -59713418 - L1VL4 LINE L1 -2161 3722 3401 3 1270 10869 135 8 31 chr6 89803622 89805891 -59711146 - L1VL4 LINE L1 -2942 2941 725 3 1270 282 298 38 12 chr6 89805870 89806030 -59711007 - L1VL4 LINE L1 -5783 833 670 3 1270 831 294 65 85 chr6 89806108 89806594 -59710443 - L1VL1 LINE L1 -6008 414 4 3 1270 1637 159 3 86 chr6 89806723 89807073 -59709964 + ORR1A3 LTR MaLR 1 321 -5 3 1270 1194 180 0 0 chr6 89807079 89807307 -59709730 + ORR1A3-int LTR MaLR 2 229 -1734 3 1270 2235 205 8 8 chr6 89807299 89807780 -59709257 + ORR1A3-int LTR MaLR 1482 1962 -1 3 1270 1569 194 6 58 chr6 89807781 89808125 -59708912 + ORR1A3 LTR MaLR 1 326 0 3 1270 204 238 0 0 chr6 89809034 89809076 -59707961 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1270 1598 189 88 79 chr6 89809750 89810193 -59706844 - LTRIS5 LTR ERV1 0 447 1 3 1270 9102 290 30 26 chr6 89810194 89815363 -59701674 - MuRRS4-int LTR ERV1 -93 7359 1911 3 1270 1183 61 0 0 chr6 89815368 89815515 -59701522 + B1_Mus1 SINE Alu 2 148 0 3 1270 228 67 0 0 chr6 89815515 89815545 -59701492 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1270 5089 277 29 32 chr6 89815585 89817128 -59699909 - MuRRS4-int LTR ERV1 -3520 1543 5 3 1270 1461 205 83 60 chr6 89817141 89817572 -59699465 - LTRIS5 LTR ERV1 -6 441 1 3 1270 4807 157 8 78 chr6 89817615 89818583 -59698454 + RLTR13D6 LTR ERVK 1 900 -2 3 1270 25 31 0 0 chr6 89819286 89819318 -59697719 + AT_rich Low_complexity Low_complexity 1 32 0 3 1270 745 311 69 28 chr6 89821647 89822008 -59695029 - MTD LTR MaLR -19 400 25 3 1270 1528 101 0 0 chr6 89822099 89822307 -59694730 - L1_Mus1 LINE L1 0 6567 6360 3 1270 926 270 90 36 chr6 89822466 89822911 -59694126 - MTC-int LTR MaLR -120 1138 670 3 1270 799 289 117 0 chr6 89823024 89823290 -59693747 - MTD LTR MaLR -122 297 1 3 1270 291 157 0 0 chr6 89823602 89823653 -59693384 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1270 648 241 7 7 chr6 89824507 89824653 -59692384 + B1_Mus1 SINE Alu 2 147 -1 3 1270 211 263 35 0 chr6 89827090 89827147 -59689890 + (CCCA)n Simple_repeat Simple_repeat 1 59 0 3 1270 3929 149 32 3 chr6 89827149 89827808 -59689229 - Lx2 LINE L1 -382 6615 5938 3 1270 5919 168 25 57 chr6 89828373 89828742 -59688295 + Lx3B LINE L1 5784 6157 -816 3 1270 644 0 129 0 chr6 89828742 89828974 -59688063 + (TAGG)n Simple_repeat Simple_repeat 1 261 0 3 1270 5919 168 25 57 chr6 89828974 89829040 -59687997 + Lx3B LINE L1 6158 6177 -796 3 1270 595 0 130 0 chr6 89829040 89829279 -59687758 + (TAGG)n Simple_repeat Simple_repeat 1 269 0 3 1270 5919 168 25 57 chr6 89829279 89830064 -59686973 + Lx3B LINE L1 6178 6966 -7 3 1270 1265 239 107 16 chr6 89830154 89830520 -59686517 - MTD LTR MaLR 0 419 21 3 1270 309 274 14 0 chr6 89831142 89831215 -59685822 - ORR1D2 LTR MaLR -101 269 196 3 1270 186 176 0 0 chr6 89831550 89831601 -59685436 + CT-rich Low_complexity Low_complexity 2 52 0 3 1270 351 0 0 0 chr6 89831643 89831682 -59685355 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1270 297 0 0 0 chr6 89831682 89831714 -59685323 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1270 280 200 0 14 chr6 89831717 89831788 -59685249 - RLTR15 LTR ERVK -257 102 33 3 1270 609 174 16 0 chr6 89831866 89831987 -59685050 + URR1B DNA MER1_type 103 225 0 3 1270 1491 150 114 65 chr6 89834128 89834434 -59682603 + ORR1A3 LTR MaLR 1 321 -5 3 1270 1197 170 46 0 chr6 89834440 89834658 -59682379 + ORR1A3-int LTR MaLR 2 229 -1734 3 1270 2526 193 10 4 chr6 89834650 89835129 -59681908 + ORR1A3-int LTR MaLR 1482 1963 0 3 1270 1433 192 39 60 chr6 89835129 89835462 -59681575 + ORR1A3 LTR MaLR 1 326 0 3 1270 225 0 0 0 chr6 89836746 89836771 -59680266 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1270 626 244 174 0 chr6 89837165 89837418 -59679619 - Lx LINE L1 -3 7641 7345 3 1270 255 237 0 0 chr6 89837418 89837497 -59679540 + (CTG)n Simple_repeat Simple_repeat 1 79 0 3 1270 675 75 19 9 chr6 89837499 89837607 -59679430 + (TTC)n Simple_repeat Simple_repeat 2 110 0 3 1270 1906 101 7 0 chr6 89837632 89837909 -59679128 - L1_Mus3 LINE L1 0 6638 6360 3 1270 3057 64 34 7 chr6 89837909 89838347 -59678690 + L1_Mus3 LINE L1 5929 6378 -260 3 1270 1207 171 120 7 chr6 89838346 89838647 -59678390 - Lx LINE L1 -287 7357 7023 3 1270 1288 265 114 54 chr6 89838647 89839215 -59677822 + RMER13A LTR ERVK 1 602 -258 3 1270 2644 179 20 4 chr6 89839234 89839732 -59677305 - Lx LINE L1 -4 6650 6145 3 1270 856 181 6 13 chr6 89839732 89839889 -59677148 - RLTR17 LTR ERVK -414 278 123 3 1270 2946 96 14 5 chr6 89839891 89840330 -59676707 - Lx LINE L1 -524 6130 5688 3 1270 2497 176 11 11 chr6 89840330 89840767 -59676270 + RLTR17 LTR ERVK 1 437 -255 3 1270 3277 85 30 0 chr6 89840767 89841260 -59675777 + MusHAL1 LINE L1 1279 1786 -926 3 1270 398 309 40 8 chr6 89841299 89841423 -59675614 + RMER13A LTR ERVK 683 810 -50 3 1270 243 0 0 0 chr6 89841637 89841664 -59675373 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1270 770 207 7 0 chr6 89842465 89842605 -59674432 + B1_Mus1 SINE Alu 2 142 -6 3 1270 300 155 0 0 chr6 89842696 89842767 -59674270 + GA-rich Low_complexity Low_complexity 2 72 0 3 1270 314 132 38 0 chr6 89842767 89842820 -59674217 + HAL1-3A_ME LINE L1 1968 2022 -836 3 1270 310 322 72 92 chr6 89844512 89844707 -59672330 - B3A SINE B2 0 198 8 3 1270 369 0 0 0 chr6 89844835 89844876 -59672161 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1270 259 313 79 87 chr6 89845958 89846084 -59670953 + PB1D10 SINE Alu 2 126 -21 3 1270 776 187 7 0 chr6 89846122 89846261 -59670776 + B1_Mur4 SINE Alu 6 145 -5 3 1270 609 14 0 0 chr6 89846417 89846487 -59670550 + (CAAAC)n Simple_repeat Simple_repeat 5 74 0 3 1270 2822 76 5 37 chr6 89846998 89847406 -59669631 - L1_Mus2 LINE L1 0 6566 6172 3 1270 1951 246 42 43 chr6 89848429 89849360 -59667677 - Lx5 LINE L1 0 7050 6164 3 1270 24 0 0 0 chr6 89850474 89850498 -59666539 + AT_rich Low_complexity Low_complexity 1 24 0 3 1270 517 172 14 26 chr6 89850537 89850680 -59666357 - Lx2 LINE L1 -12 6985 6870 3 1270 932 116 0 0 chr6 89850667 89850814 -59666223 - MusHAL1 LINE L1 -1079 1633 1487 3 1270 3011 55 34 3 chr6 89850814 89851198 -59665839 + MTA_Mm LTR MaLR 1 396 0 3 1270 6293 57 8 1 chr6 89851198 89852025 -59665012 + MTA_Mm-int LTR MaLR 1 833 -265 3 1270 5590 74 27 25 chr6 89852025 89852811 -59664226 - L1Md_F2 LINE L1 -13 6569 5783 3 1270 10145 53 8 15 chr6 89853139 89853935 -59663102 - L1Md_F3 LINE L1 0 6584 5798 4 1270 1132 75 0 0 chr6 89853935 89854081 -59662956 - B1_Mus2 SINE Alu 0 147 2 4 1270 10145 84 6 8 chr6 89854081 89855444 -59661593 - L1Md_F3 LINE L1 -86 5797 4427 4 1270 6195 62 13 0 chr6 89855452 89856238 -59660799 - L1Md_F2 LINE L1 0 6582 5787 4 1270 273 319 9 26 chr6 89856239 89856355 -59660682 - Lx9 LINE L1 -932 6712 6599 4 1270 387 41 0 0 chr6 89857023 89857072 -59659965 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1270 296 312 49 27 chr6 89859089 89859332 -59657705 + L1MB3 LINE L1 5727 5974 -209 4 1270 275 248 185 25 chr6 89860110 89860267 -59656770 - RMER1B Other Other -5 1061 880 4 1270 650 281 80 35 chr6 89860253 89860785 -59656252 - RMER1B Other Other -544 798 113 4 1270 3853 172 66 23 chr6 89860792 89861707 -59655330 - MYSERV16_I-int LTR ERVK -152 2174 1221 4 1270 35689 27 8 8 chr6 89861707 89866893 -59650144 + L1Md_A LINE L1 442 5586 -297 4 1270 8411 36 0 0 chr6 89866893 89867888 -59649149 + L1Md_A LINE L1 5587 6581 -1 4 1270 35689 24 9 1 chr6 89867888 89868007 -59649030 + L1Md_A LINE L1 5587 5743 -140 4 1270 1805 263 79 58 chr6 89868011 89869314 -59647723 - MYSERV16_I-int LTR ERVK -984 1858 27 4 1270 9716 39 4 3 chr6 89869314 89871275 -59645762 - L1Md_F3 LINE L1 0 6584 4623 4 1270 8032 216 8 15 chr6 89871278 89873125 -59643912 - MYSERV6-int LTR ERVK -4597 4362 2529 4 1270 413 216 0 0 chr6 89873127 89873201 -59643836 - RLTR17 LTR ERVK -618 74 1 4 1270 525 217 0 0 chr6 89873201 89873292 -59643745 + B1_Mur1 SINE Alu 44 134 -15 4 1270 266 333 0 20 chr6 89873463 89873564 -59643473 - PB1D10 SINE Alu 0 117 19 4 1270 249 341 0 93 chr6 89873492 89873589 -59643448 - ID_B1 SINE B4 -55 169 82 4 1270 198 0 0 0 chr6 89875806 89875828 -59641209 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 4 1270 5544 125 13 22 chr6 89876632 89877773 -59639264 + L1VL4 LINE L1 35 1162 -2397 4 1270 14971 112 5 10 chr6 89877794 89880908 -59636129 - L1_Mus2 LINE L1 -14 6552 3449 4 1270 354 23 0 0 chr6 89881284 89881327 -59635710 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1270 21 0 0 0 chr6 89884751 89884772 -59632265 + AT_rich Low_complexity Low_complexity 1 21 0 4 1270 900 322 60 17 chr6 89885190 89885538 -59631499 - MTD LTR MaLR -29 390 28 4 1270 198 0 0 0 chr6 89885538 89885560 -59631477 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 4 1270 1581 247 179 108 chr6 89885635 89886713 -59630324 - MTD-int LTR MaLR -1 1257 1 4 1270 1452 266 55 15 chr6 89886713 89887114 -59629923 - MTD LTR MaLR 0 419 3 4 1270 366 173 0 0 chr6 89887429 89887504 -59629533 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1270 193 164 0 62 chr6 89887904 89887969 -59629068 + A-rich Low_complexity Low_complexity 5 65 0 4 1270 517 262 14 0 chr6 89888368 89888509 -59628528 + B1_Mus1 SINE Alu 5 147 -1 4 1270 23 68 0 0 chr6 89890221 89890265 -59626772 + AT_rich Low_complexity Low_complexity 1 44 0 4 1270 323 67 0 0 chr6 89891343 89891422 -59625615 - L1_Mus3 LINE L1 0 6638 6579 4 1270 5491 91 3 9 chr6 89891517 89892263 -59624774 - L1_Mus3 LINE L1 0 6638 5898 4 1270 2271 43 46 0 chr6 89892265 89892570 -59624467 - ORR1A0 LTR MaLR 0 346 28 4 1270 65218 15 17 1 chr6 89892570 89899891 -59617146 + RLTR6-int LTR ERV1 342 7778 0 4 1270 2014 112 237 46 chr6 89900000 89900460 -59616577 + RLTR6_Mm LTR ERV1 37 584 -70 4 1270 11442 158 46 30 chr6 89900468 89903324 -59613713 - L1VL4 LINE L1 -2471 3412 609 4 1270 700 157 9 0 chr6 89903722 89903837 -59613200 + SRV_MM-int LTR ERVK 49 164 -6003 4 1270 6674 110 7 2 chr6 89904437 89905341 -59611696 + SRV_MM-int LTR ERVK 489 1396 -4771 4 1270 7698 73 3 3 chr6 89905354 89906830 -59610207 - L1Md_F2 LINE L1 -17 6565 5089 4 1270 5078 87 0 6 chr6 89906823 89907518 -59609519 + L1Md_F2 LINE L1 4396 5086 -797 4 1270 10766 97 16 1 chr6 89907518 89908964 -59608073 + SRV_MM-int LTR ERVK 1614 3081 -3086 4 1270 1372 102 10 5 chr6 89908977 89909175 -59607862 - SRV_MM-int LTR ERVK -1222 4945 4747 4 1270 28258 82 7 7 chr6 89909242 89913511 -59603526 + L1Md_F2 LINE L1 749 5115 -771 4 1270 7839 54 5 7 chr6 89913511 89914485 -59602552 + L1Md_F2 LINE L1 5614 6585 0 4 1270 2963 96 7 16 chr6 89914479 89914915 -59602122 + L1Md_F2 LINE L1 6148 6579 -3 4 1270 258 240 0 0 chr6 89915037 89915087 -59601950 - SRV_MM-int LTR ERVK -1357 6860 6811 4 1271 4882 114 25 69 chr6 89915427 89916225 -59600812 - SRV_MM-int LTR ERVK -394 5773 5011 4 1271 292 296 14 0 chr6 89916558 89916629 -59600408 - ORR1D2 LTR MaLR -101 269 198 4 1271 188 0 74 0 chr6 89916653 89916680 -59600357 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1271 259 236 0 0 chr6 89917025 89917080 -59599957 + CT-rich Low_complexity Low_complexity 2 56 0 4 1271 1100 89 0 6 chr6 89917081 89917262 -59599775 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1271 246 213 0 16 chr6 89917267 89917329 -59599708 - RLTR15 LTR ERVK -266 93 33 4 1271 589 190 16 0 chr6 89917404 89917525 -59599512 + URR1B DNA MER1_type 103 225 0 4 1271 216 309 99 33 chr6 89917689 89917870 -59599167 + MIR SINE MIR 70 262 0 4 1271 465 214 0 0 chr6 89918000 89918103 -59598934 + (TATG)n Simple_repeat Simple_repeat 2 104 0 4 1271 1637 194 6 58 chr6 89919841 89920185 -59596852 + ORR1A3 LTR MaLR 1 326 0 4 1271 2332 182 17 21 chr6 89920185 89920879 -59596158 + ORR1A3-int LTR MaLR 1458 1963 0 4 1271 1810 156 6 64 chr6 89920879 89921222 -59595815 + ORR1A3 LTR MaLR 1 323 -3 4 1271 195 69 0 0 chr6 89921490 89921519 -59595518 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1271 1757 203 232 8 chr6 89922982 89923490 -59593547 - Lx9 LINE L1 -2 7642 7021 4 1271 2043 266 102 37 chr6 89923501 89924250 -59592787 + RMER13A LTR ERVK 14 810 -50 4 1271 244 178 0 0 chr6 89924274 89924319 -59592718 - Lx9 LINE L1 -616 7028 6984 4 1271 731 207 0 0 chr6 89925286 89925421 -59591616 + B1_Mus1 SINE Alu 1 135 -13 4 1271 411 21 0 0 chr6 89925501 89925549 -59591488 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1271 558 63 0 0 chr6 89925549 89925627 -59591410 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 1271 278 227 80 18 chr6 89927308 89927420 -59589617 - Lx5 LINE L1 0 7050 6932 4 1271 3960 120 23 10 chr6 89927422 89928231 -59588806 - RLTR13D1 LTR ERVK 0 1023 187 4 1271 2682 70 0 14 chr6 89928231 89928578 -59588459 + ORR1A1 LTR MaLR 1 342 -4 4 1271 4626 98 37 0 chr6 89928583 89929348 -59587689 + ORR1A1-int LTR MaLR 2 794 -998 4 1271 2847 65 2 2 chr6 89929344 89929742 -59587295 + ORR1A1-int LTR MaLR 1395 1792 0 4 1271 2362 85 3 17 chr6 89929742 89930088 -59586949 + ORR1A1 LTR MaLR 1 341 -5 4 1271 885 203 17 17 chr6 89930097 89930277 -59586760 - RLTR13D1 LTR ERVK -722 180 1 4 1271 13886 194 38 26 chr6 89930279 89934181 -59582856 - Lx4B LINE L1 -103 6955 3007 4 1271 601 156 0 0 chr6 89934201 89934297 -59582740 - B1_Mus1 SINE Alu -50 98 3 4 1271 42 20 0 0 chr6 89934502 89934551 -59582486 + AT_rich Low_complexity Low_complexity 1 49 0 4 1271 1783 147 83 9 chr6 89934564 89934888 -59582149 - Lx3B LINE L1 -8 6965 6618 4 1271 2600 141 12 2 chr6 89934888 89935294 -59581743 + Lx3B LINE L1 6165 6574 -399 4 1271 547 259 206 6 chr6 89935321 89935496 -59581541 - B3 SINE B2 -4 212 3 4 1271 1068 196 23 0 chr6 89935500 89935720 -59581317 - Lx4B LINE L1 -2869 3008 2784 4 1271 2012 249 26 85 chr6 89935721 89936370 -59580667 + RMER19C LTR ERVK 1 611 0 4 1271 411 211 17 96 chr6 89936370 89936485 -59580552 - Lx4B LINE L1 -3089 2788 2683 4 1271 5174 149 56 3 chr6 89936492 89937373 -59579664 - Lx2 LINE L1 0 6997 6071 4 1271 4686 209 52 89 chr6 89937376 89937863 -59579174 - Lx4B LINE L1 -3145 2735 2243 4 1271 495 0 0 0 chr6 89937863 89937918 -59579119 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1271 4686 209 52 89 chr6 89937918 89938009 -59579028 - Lx4B LINE L1 -3638 2242 2222 4 1271 360 0 0 0 chr6 89938009 89938049 -59578988 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1271 4686 209 52 89 chr6 89938049 89938194 -59578843 - Lx4B LINE L1 -3659 2221 2072 4 1271 399 21 0 0 chr6 89938194 89938242 -59578795 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 1271 4686 208 69 75 chr6 89938242 89939242 -59577795 - Lx4B LINE L1 -3809 2071 1056 4 1271 4752 169 22 1 chr6 89939245 89940065 -59576972 - Lx LINE L1 -3 6651 5815 4 1271 722 112 26 0 chr6 89940065 89940181 -59576856 - RMER4B LTR ERVK -450 135 17 4 1271 2889 49 3 0 chr6 89940330 89940675 -59576362 - ORR1A0 LTR MaLR 0 346 1 4 1271 378 0 0 0 chr6 89941105 89941147 -59575890 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1271 490 294 0 34 chr6 89941233 89941381 -59575656 + B1_Mur1 SINE Alu 1 143 -6 4 1271 496 240 179 53 chr6 89941474 89941720 -59575317 + RLTR10A LTR ERVK 135 411 0 4 1271 497 156 61 52 chr6 89941736 89941851 -59575186 + RLTR10-int LTR ERVK 318 433 -1554 4 1271 340 276 46 46 chr6 89942061 89942213 -59574824 + IAP-d-int LTR ERVK 2237 2388 -4154 4 1271 2176 284 53 50 chr6 89942221 89944752 -59572285 + IAP-d-int LTR ERVK 992 5080 -1462 4 1271 513 235 172 62 chr6 89944771 89945034 -59572003 + RLTR10A LTR ERVK 104 411 0 4 1271 264 292 9 86 chr6 89945154 89945270 -59571767 - PB1D10 SINE Alu -1 116 10 4 1271 1495 134 12 8 chr6 89945626 89945875 -59571162 + Lx2 LINE L1 6748 6997 0 4 1271 7250 94 6 1 chr6 89946130 89947397 -59569640 + L1_Mus2 LINE L1 5293 6566 0 4 1271 36277 71 1 15 chr6 89948058 89954210 -59562827 - L1Md_F2 LINE L1 -12 6570 508 4 1271 4374 64 18 0 chr6 89954595 89955156 -59561881 - L1Md_F3 LINE L1 -2 6582 6012 4 1271 3405 39 2 132 chr6 89955156 89955657 -59561380 + RLTR10C LTR ERVK 1 436 0 4 1271 2220 49 0 4 chr6 89955657 89955925 -59561112 + MMERVK10C-int LTR ERVK 1 267 -7314 4 1271 228 164 53 27 chr6 89956001 89956076 -59560961 + GA-rich Low_complexity Low_complexity 3 79 0 4 1271 2525 29 117 0 chr6 89956076 89956409 -59560628 + MMERVK10C-int LTR ERVK 553 911 -1076 4 1271 429 294 41 41 chr6 89956409 89956629 -59560408 + MMERVK10C-int LTR ERVK 1347 1566 -6015 4 1271 2839 105 7 0 chr6 89956639 89957051 -59559986 + MMERVK10C-int LTR ERVK 5002 5810 -1771 4 1271 7621 43 0 53 chr6 89957042 89958025 -59559012 + MMERVK10C-int LTR ERVK 6651 7581 0 4 1271 3495 32 0 132 chr6 89958025 89958527 -59558510 + RLTR10C LTR ERVK 1 436 0 4 1271 12508 58 17 1 chr6 89958527 89960254 -59556783 - L1Md_F3 LINE L1 -568 6016 4258 4 1271 26165 71 45 1 chr6 89960250 89963750 -59553287 + L1Md_F2 LINE L1 1933 5586 -297 4 1271 7738 65 11 1 chr6 89963750 89964735 -59552302 + L1Md_F2 LINE L1 5587 6581 -1 4 1271 290 228 0 0 chr6 89965485 89965570 -59551467 + L1_Mur3 LINE L1 3844 3962 -2184 4 1271 834 186 7 0 chr6 89967965 89968110 -59548927 - B1_Mus1 SINE Alu -1 147 2 4 1271 203 308 13 0 chr6 89968515 89968593 -59548444 + T-rich Low_complexity Low_complexity 5 83 0 4 1271 543 118 0 0 chr6 89968972 89969057 -59547980 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 1271 429 20 0 0 chr6 89969069 89969119 -59547918 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1271 1387 262 55 15 chr6 89969433 89969836 -59547201 + MTD LTR MaLR 1 419 0 4 1271 450 202 11 254 chr6 89969841 89970219 -59546818 + MTD-int LTR MaLR 972 1257 -1 4 1271 1035 270 57 23 chr6 89970259 89970612 -59546425 + MTD LTR MaLR 25 389 -30 4 1271 26 30 0 0 chr6 89973014 89973047 -59543990 + AT_rich Low_complexity Low_complexity 1 33 0 4 1271 1918 95 0 8 chr6 89974893 89975159 -59541878 + L1_Mm LINE L1 2140 2403 -3480 4 1271 2600 68 0 0 chr6 89975158 89975494 -59541543 - L1_Mm LINE L1 -3144 2739 2404 4 1271 5681 102 15 0 chr6 89975491 89976272 -59540765 + L1_Mm LINE L1 4363 5155 -728 4 1271 26 30 0 0 chr6 89977287 89977320 -59539717 + AT_rich Low_complexity Low_complexity 1 33 0 4 1271 38712 32 2 0 chr6 89977511 89985872 -59531165 - L1Md_T LINE L1 0 6585 1 4 1271 1024 279 53 24 chr6 89988104 89988479 -59528558 - MTD LTR MaLR -30 389 4 4 1271 354 196 30 242 chr6 89988496 89988515 -59528522 - MTD-int LTR MaLR -1 1257 1239 4 1271 228 35 0 0 chr6 89988515 89988544 -59528493 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1271 354 196 30 242 chr6 89988544 89988887 -59528150 - MTD-int LTR MaLR -20 1238 972 4 1271 1375 262 55 15 chr6 89988892 89989295 -59527742 - MTD LTR MaLR 0 419 1 5 1271 537 16 0 0 chr6 89989609 89989671 -59527366 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1271 270 0 0 0 chr6 89989671 89989700 -59527337 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1271 219 139 0 0 chr6 89989700 89989736 -59527301 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 1271 223 301 12 0 chr6 89990115 89990198 -59526839 + A-rich Low_complexity Low_complexity 5 88 0 5 1271 858 179 7 0 chr6 89990603 89990748 -59526289 + B1_Mus1 SINE Alu 2 147 -1 5 1271 290 222 0 0 chr6 89993147 89993219 -59523818 - L1_Mur3 LINE L1 -1965 3915 3844 5 1271 7598 57 8 0 chr6 89993349 89994562 -59522475 - L1Md_F2 LINE L1 -12 6570 5344 5 1271 190 0 32 32 chr6 89995254 89995285 -59521752 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 5 1271 786 317 86 16 chr6 89995603 89995917 -59521120 + MTEa LTR MaLR 1 336 -43 5 1271 275 131 35 35 chr6 89995921 89996008 -59521029 + A-rich Low_complexity Low_complexity 2 88 0 5 1271 723 81 0 0 chr6 89996225 89996324 -59520713 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 5 1271 5835 146 73 17 chr6 89996329 89997372 -59519665 - Lx2 LINE L1 -4 6993 5893 5 1271 363 44 0 0 chr6 89997609 89997654 -59519383 + (TATG)n Simple_repeat Simple_repeat 2 46 0 5 1271 2218 131 42 8 chr6 89998899 89999277 -59517760 + RLTR9D LTR ERVK 1 391 -12 5 1271 1274 260 19 66 chr6 89999309 89999996 -59517041 + ETnERV-int LTR ERVK 3 719 -2595 5 1271 3742 235 15 32 chr6 90000002 90000769 -59516268 + ETnERV2-int LTR ERVK 2835 4365 -3041 1 1271 1139 45 0 0 chr6 90000769 90000902 -59516135 - B1_Mm SINE Alu -14 133 1 2 1271 3742 148 11 49 chr6 90000902 90001253 -59515784 + ETnERV2-int LTR ERVK 4366 4706 -2700 1 1271 279 244 37 37 chr6 90001328 90001409 -59515628 - ORR1D2 LTR MaLR -101 269 187 3 1271 645 14 0 0 chr6 90001647 90001721 -59515316 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1271 353 186 126 11 chr6 90001724 90001811 -59515226 - RLTR15 LTR ERVK -262 97 1 5 1271 549 242 8 0 chr6 90001864 90001988 -59515049 + URR1B DNA MER1_type 101 225 0 6 1271 295 222 87 39 chr6 90001897 90002000 -59515037 - CYRA11_Mm Unknown Y-chromosome -350 267 160 7 1271 281 293 99 44 chr6 90002156 90002338 -59514699 + MIR SINE MIR 71 262 0 8 1271 252 271 50 101 chr6 90002971 90003090 -59513947 - ORR1D2 LTR MaLR -161 209 97 3 1271 1865 155 0 61 chr6 90004162 90004505 -59512532 + ORR1A3 LTR MaLR 1 322 -4 9 1271 2124 187 6 7 chr6 90004509 90005131 -59511906 + ORR1A3-int LTR MaLR 1448 1883 -80 9 1271 1528 171 5 4 chr6 90005131 90005460 -59511577 + L1Md_A LINE L1 422 952 -5772 1 1271 1625 211 136 23 chr6 90005460 90005888 -59511149 - RMER13A LTR ERVK -382 478 3 1 1271 1552 202 112 5 chr6 90005889 90006307 -59510730 + Lx9 LINE L1 7022 7484 -160 1 1271 357 204 11 11 chr6 90006311 90006405 -59510632 + L1VL1 LINE L1 42 135 -6287 1 1271 342 0 0 0 chr6 90006834 90006872 -59510165 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1271 767 211 7 0 chr6 90008160 90008302 -59508735 + B1_Mur4 SINE Alu 2 144 -6 1 1271 465 66 0 0 chr6 90008352 90008413 -59508624 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1271 180 111 0 0 chr6 90008413 90008440 -59508597 + (CAAAC)n Simple_repeat Simple_repeat 3 29 0 1 1271 3315 75 2 0 chr6 90008786 90009237 -59507800 + L1Md_F2 LINE L1 562 1013 -5603 1 1271 4848 49 6 0 chr6 90009238 90010107 -59506930 + L1Md_F2 LINE L1 5234 6107 -475 1 1271 16524 73 18 3 chr6 90010095 90013097 -59503940 + L1Md_F2 LINE L1 3513 6562 -20 1 1271 1929 118 10 75 chr6 90013109 90013276 -59503761 + MusHAL1 LINE L1 751 896 -1816 2 1271 207 0 0 0 chr6 90013276 90013299 -59503738 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1271 1001 116 14 0 chr6 90013301 90013447 -59503590 - B1_Mus1 SINE Alu 0 148 1 2 1271 1929 118 10 75 chr6 90013447 90013678 -59503359 + MusHAL1 LINE L1 897 1126 -1586 2 1271 1290 291 35 57 chr6 90013775 90014621 -59502416 - L1_Rod LINE L1 -1222 4625 3798 2 1271 7848 155 39 11 chr6 90014641 90014829 -59502208 + Lx5 LINE L1 3566 3754 -2123 2 1271 5012 184 12 25 chr6 90014829 90015747 -59501290 - RMER13B LTR ERVK -2 906 1 2 1271 7848 155 39 11 chr6 90015747 90016181 -59500856 + Lx5 LINE L1 3755 4185 -1692 2 1271 207 0 0 0 chr6 90016181 90016204 -59500833 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1271 7848 155 39 11 chr6 90016204 90017187 -59499850 + Lx5 LINE L1 4186 5215 -662 2 1271 4628 209 80 77 chr6 90017185 90018521 -59498516 + Lx5 LINE L1 5711 7050 0 2 1271 363 96 0 0 chr6 90018521 90018573 -59498464 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2 1271 335 195 0 24 chr6 90020129 90020213 -59496824 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 2 1271 722 124 0 8 chr6 90020213 90020335 -59496702 + (CA)n Simple_repeat Simple_repeat 2 122 0 2 1271 441 239 54 27 chr6 90020335 90020447 -59496590 - B1_Mus1 SINE Alu -6 142 28 3 1271 289 240 142 45 chr6 90020445 90020585 -59496452 - PB1D10 SINE Alu -6 141 2 3 1271 477 0 0 0 chr6 90021423 90021476 -59495561 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1271 572 324 53 11 chr6 90021604 90021791 -59495246 + B3A SINE B2 4 198 0 3 1271 603 0 0 0 chr6 90023536 90023603 -59493434 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 1271 384 71 0 0 chr6 90023603 90023658 -59493379 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1271 757 201 35 0 chr6 90023715 90023859 -59493178 - B1_Mur4 SINE Alu 0 150 2 3 1271 272 254 79 93 chr6 90023859 90023886 -59493151 - MT2B LTR ERVL -449 152 128 3 1271 185 364 134 8 chr6 90023907 90024026 -59493011 + MIRc SINE MIR 49 182 -86 3 1271 1709 213 138 5 chr6 90024803 90025381 -59491656 + Lx9 LINE L1 6989 7643 -1 3 1271 22 56 0 0 chr6 90026599 90026635 -59490402 + AT_rich Low_complexity Low_complexity 1 36 0 4 1271 743 194 17 114 chr6 90026638 90026813 -59490224 - ORR1A3 LTR MaLR -171 158 1 4 1271 2800 139 32 11 chr6 90026813 90027285 -59489752 - ORR1A3-int LTR MaLR 0 1963 1482 4 1271 1215 160 18 4 chr6 90027277 90027503 -59489534 - ORR1A3-int LTR MaLR -1734 229 1 4 1271 1947 137 12 61 chr6 90027503 90027846 -59489191 - ORR1A3 LTR MaLR 0 326 1 4 1271 533 248 46 39 chr6 90028896 90029130 -59487907 + ORR1D2 LTR MaLR 73 289 -85 4 1271 3959 158 10 1 chr6 90030005 90030679 -59486358 + Lx2 LINE L1 6317 6996 -1 4 1271 339 121 0 0 chr6 90030714 90030772 -59486265 + (TATG)n Simple_repeat Simple_repeat 3 60 0 4 1271 270 0 0 0 chr6 90031142 90031172 -59485865 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1271 1604 97 121 16 chr6 90031172 90031443 -59485594 + RMER17A2 LTR ERVK 1 306 -652 4 1271 18098 108 27 66 chr6 90031443 90033458 -59483579 + L1Md_F LINE L1 224 2000 -3883 4 1271 8340 36 2 0 chr6 90033458 90034451 -59482586 + L1Md_A LINE L1 5587 6581 -1 4 1271 252 0 0 0 chr6 90034461 90034489 -59482548 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 4 1271 18098 71 2 99 chr6 90034489 90036624 -59480413 + L1Md_F LINE L1 2001 4097 -1786 4 1271 1809 118 4 14 chr6 90036624 90036900 -59480137 + L1Md_F2 LINE L1 6299 6571 -11 5 1271 1460 106 171 0 chr6 90036915 90037190 -59479847 + RMER17A2 LTR ERVK 272 593 -313 5 1271 305 196 9 56 chr6 90037185 90037222 -59479815 + B2_Mm2 SINE B2 93 129 -66 5 1271 576 29 0 0 chr6 90037222 90037292 -59479745 + (CAAT)n Simple_repeat Simple_repeat 2 71 0 5 1271 305 196 9 56 chr6 90037292 90037362 -59479675 + B2_Mm2 SINE B2 130 194 -1 5 1271 574 234 6 70 chr6 90037728 90037884 -59479153 - B1_Mus1 SINE Alu -1 147 2 5 1271 284 202 8 34 chr6 90038263 90038381 -59478656 + T-rich Low_complexity Low_complexity 5 119 0 5 1271 1345 278 27 12 chr6 90039137 90039548 -59477489 + MTD LTR MaLR 1 417 -2 5 1271 1629 249 208 112 chr6 90039550 90040696 -59476341 + MTD-int LTR MaLR 1 1256 -2 5 1271 859 331 59 24 chr6 90040736 90041111 -59475926 + MTD LTR MaLR 25 412 -7 5 1271 19968 129 14 19 chr6 90041149 90045430 -59471607 - L1Md_F LINE L1 -1455 4428 167 5 1271 4227 119 0 0 chr6 90045425 90046076 -59470961 - L1VL1 LINE L1 -5965 905 276 5 158 639 248 7 0 chr6 90046353 90046498 -59470539 + B1_Mus1 SINE Alu 2 147 -1 5 1272 22 0 0 0 chr6 90046842 90046864 -59470173 + AT_rich Low_complexity Low_complexity 1 22 0 6 1272 214 308 13 13 chr6 90047088 90047167 -59469870 - B1F1 SINE Alu -70 79 1 6 1272 1484 234 105 13 chr6 90047886 90048268 -59468769 - MTD LTR MaLR 0 419 3 6 1272 225 261 0 0 chr6 90048350 90048396 -59468641 + MTD LTR MaLR 8 53 -326 6 1272 475 309 99 14 chr6 90048394 90048605 -59468432 + MTD LTR MaLR 172 417 -2 6 1272 536 92 23 0 chr6 90049105 90049192 -59467845 + (CATA)n Simple_repeat Simple_repeat 3 91 0 6 1272 3699 160 19 13 chr6 90049216 90049893 -59467144 - Lx2 LINE L1 0 6997 6317 6 1272 428 273 46 3 chr6 90050842 90050965 -59466072 - ORR1D2 LTR MaLR -101 269 143 6 1272 1977 140 6 58 chr6 90052083 90052425 -59464612 + ORR1A3 LTR MaLR 1 324 -2 6 1272 1314 150 30 0 chr6 90052428 90052661 -59464376 + ORR1A3-int LTR MaLR 2 241 -1722 6 1272 2706 178 8 4 chr6 90052646 90053126 -59463911 + ORR1A3-int LTR MaLR 1482 1963 0 6 1272 1761 167 12 59 chr6 90053126 90053464 -59463573 + ORR1A3 LTR MaLR 1 322 -4 6 1272 275 302 0 0 chr6 90054944 90055050 -59461987 - Lx9 LINE L1 -7 7637 7532 6 1272 1766 192 101 4 chr6 90055062 90055517 -59461520 - Lx9 LINE L1 -164 7480 6982 6 1272 192 325 107 58 chr6 90056293 90056414 -59460623 - MIR SINE MIR -82 180 54 6 1272 649 239 0 0 chr6 90056472 90056610 -59460427 + B1_Mus1 SINE Alu 5 142 -6 7 1272 222 37 0 0 chr6 90056683 90056710 -59460327 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1272 183 100 0 0 chr6 90056710 90056740 -59460297 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1272 357 24 0 0 chr6 90058513 90058555 -59458482 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1272 471 18 0 0 chr6 90058708 90058764 -59458273 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1272 3730 112 14 0 chr6 90058973 90059547 -59457490 - L1_Mus3 LINE L1 -111 5772 5191 7 1272 5566 107 36 1 chr6 90059547 90060381 -59456656 + L1_Mus3 LINE L1 5768 6630 -8 7 1272 26865 122 54 25 chr6 90060533 90066546 -59450491 + L1Md_F2 LINE L1 343 6572 -10 7 1272 3762 147 40 58 chr6 90066579 90068046 -59448991 - L1VL2 LINE L1 -2114 1501 66 7 1272 862 276 119 30 chr6 90069231 90069922 -59447115 + L1_Mur3 LINE L1 3840 4591 -1289 7 1272 564 351 12 6 chr6 90069995 90070164 -59446873 + B3 SINE B2 1 170 -46 7 1272 224 280 0 29 chr6 90070197 90070281 -59446756 - MIRc SINE MIR -124 144 60 8 1272 6657 56 16 3 chr6 90071174 90072053 -59444984 - L1Md_F2 LINE L1 -12 6570 5681 8 1272 22 80 0 0 chr6 90072863 90072913 -59444124 + AT_rich Low_complexity Low_complexity 1 50 0 8 1272 714 194 21 7 chr6 90074636 90074781 -59442256 - B1_Mus1 SINE Alu 0 148 2 8 1272 255 273 0 15 chr6 90075198 90075265 -59441772 + CT-rich Low_complexity Low_complexity 5 70 0 8 1272 206 191 24 0 chr6 90075665 90075707 -59441330 + (TA)n Simple_repeat Simple_repeat 2 44 0 8 1272 1571 265 19 12 chr6 90076007 90076423 -59440614 + MTD LTR MaLR 1 419 0 8 1272 1434 241 250 105 chr6 90076424 90077520 -59439517 + MTD-int LTR MaLR 2 1256 -2 8 1272 198 71 0 0 chr6 90077538 90077566 -59439471 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1272 1115 296 55 22 chr6 90077566 90077929 -59439108 + MTD LTR MaLR 26 400 -19 8 1272 215 29 88 0 chr6 90080342 90080376 -59436661 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 8 1272 21 71 0 0 chr6 90080792 90080834 -59436203 + AT_rich Low_complexity Low_complexity 1 42 0 8 1272 217 340 82 75 chr6 90081813 90081972 -59435065 + B4A SINE B4 15 174 -118 9 1272 455 87 0 14 chr6 90082101 90082171 -59434866 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1272 958 75 105 0 chr6 90082254 90082387 -59434650 + B1_Mm SINE Alu 1 147 0 9 1272 285 189 0 0 chr6 90082717 90082770 -59434267 + L1VL4 LINE L1 14 66 -6236 9 1272 478 110 98 0 chr6 90082763 90082845 -59434192 + L1Md_F2 LINE L1 669 758 -3157 9 1272 9612 92 20 13 chr6 90082829 90083633 -59433404 + L1Md_F2 LINE L1 2174 2992 -2891 9 1272 4183 112 37 44 chr6 90083633 90084389 -59432648 - RMER17A LTR ERVK 0 751 1 9 1272 9612 139 35 30 chr6 90084389 90085487 -59431550 + L1Md_F2 LINE L1 2991 4055 -1828 9 1272 2840 74 51 10 chr6 90085487 90085896 -59431141 - L1Md_F2 LINE L1 0 6582 6157 9 1272 6983 241 68 67 chr6 90085896 90087401 -59429636 + L1Md_F2 LINE L1 4056 5584 -299 9 1272 7547 75 3 4 chr6 90087403 90088397 -59428640 + L1Md_F2 LINE L1 5587 6579 -3 9 1272 1883 116 0 0 chr6 90088399 90088675 -59428362 - SRV_MM-int LTR ERVK -4551 1616 1341 9 1272 17489 146 4 40 chr6 90088675 90090231 -59426806 + L1_Mm LINE L1 2387 3862 -2021 9 1272 5911 32 0 0 chr6 90090231 90090920 -59426117 + L1Md_T LINE L1 5894 6582 0 9 1272 7901 33 1 4 chr6 90090918 90091862 -59425175 + L1Md_F2 LINE L1 5642 6582 0 1 1272 17489 146 4 40 chr6 90091862 90093703 -59423334 + L1_Mm LINE L1 3863 5663 -220 9 1272 3870 123 70 38 chr6 90093704 90094446 -59422591 + RMER17A LTR ERVK 1 751 0 1 1272 6438 101 12 13 chr6 90094446 90095426 -59421611 + L1_Mus3 LINE L1 5660 6638 0 1 1272 338 60 0 0 chr6 90095516 90095566 -59421471 + L1_Mus3 LINE L1 6579 6628 -10 1 1272 191 36 36 0 chr6 90095570 90095598 -59421439 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1 1272 23 68 0 0 chr6 90096653 90096697 -59420340 + AT_rich Low_complexity Low_complexity 1 44 0 1 1272 542 265 15 0 chr6 90098412 90098548 -59418489 - B1_Mus1 SINE Alu -9 139 2 1 1272 280 275 0 12 chr6 90098960 90099041 -59417996 + T-rich Low_complexity Low_complexity 5 84 0 1 1272 456 104 0 0 chr6 90099438 90099505 -59417532 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1272 1381 262 48 65 chr6 90099838 90100254 -59416783 + MTD LTR MaLR 11 419 0 1 1272 621 277 57 49 chr6 90100254 90100501 -59416536 + MTD-int LTR MaLR 1 249 -1009 1 1272 1682 228 83 130 chr6 90100518 90101324 -59415713 + MTD-int LTR MaLR 407 1251 -7 1 1272 227 26 0 115 chr6 90101395 90101482 -59415555 + (TTTTTG)n Simple_repeat Simple_repeat 2 78 0 1 1272 929 327 64 24 chr6 90101482 90101858 -59415179 + MTD LTR MaLR 10 400 -19 1 1272 186 350 33 0 chr6 90102772 90102832 -59414205 - L2c LINE L2 -39 3348 3287 1 1272 3673 135 17 0 chr6 90106087 90106725 -59410312 + L1_Mm LINE L1 3449 4097 -1786 1 1272 593 324 91 26 chr6 90108292 90108752 -59408285 - MuLV-int LTR ERV1 -5127 2479 1990 1 1272 566 12 48 0 chr6 90108817 90108900 -59408137 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 1272 232 195 0 0 chr6 90108956 90108997 -59408040 + T-rich Low_complexity Low_complexity 1 41 0 1 1272 1148 106 0 29 chr6 90109028 90109203 -59407834 - B2_Mm2 SINE B2 -25 170 1 1 1272 245 370 197 0 chr6 90110616 90110743 -59406294 + B4A SINE B4 61 212 -80 1 1272 812 210 77 6 chr6 90110788 90110970 -59406067 - Lx5 LINE L1 -469 6581 6387 1 1272 2583 184 70 6 chr6 90111111 90111767 -59405270 + L1_Mur2 LINE L1 3108 3805 -2075 1 1272 6929 87 38 2 chr6 90111763 90113434 -59403603 + L1_Mus1 LINE L1 4843 6567 0 1 1272 4106 178 10 10 chr6 90113458 90114331 -59402706 + L1_Mur2 LINE L1 3806 4678 -1199 1 1272 371 235 21 35 chr6 90114312 90114453 -59402584 + L1_Mur2 LINE L1 5233 5371 -509 1 1272 495 0 0 0 chr6 90115407 90115462 -59401575 + (TCC)n Simple_repeat Simple_repeat 3 57 0 1 1272 330 289 112 37 chr6 90115687 90115874 -59401163 - B3 SINE B2 0 216 16 1 1272 7645 162 14 7 chr6 90116435 90117945 -59399092 + L1_Mur2 LINE L1 3483 5002 -875 1 1272 8017 163 24 16 chr6 90117996 90120167 -59396870 + L1VL4 LINE L1 512 2606 -1211 1 1272 487 48 0 0 chr6 90120166 90120228 -59396809 - L1_Mm LINE L1 -658 5225 5164 1 1272 910 100 14 0 chr6 90120284 90120424 -59396613 + Lx3B LINE L1 6433 6574 -399 1 1272 446 302 76 0 chr6 90120501 90120620 -59396417 - B3 SINE B2 -86 130 3 1 1272 1006 178 28 0 chr6 90120630 90120844 -59396193 - L1_Mur2 LINE L1 -2875 3002 2783 1 1272 1395 251 32 202 chr6 90120846 90121054 -59395983 + RMER19C LTR ERVK 3 190 -421 1 1272 366 61 0 0 chr6 90121054 90121103 -59395934 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1272 1395 251 32 202 chr6 90121103 90121193 -59395844 + RMER19C LTR ERVK 191 211 -400 1 1272 360 0 0 0 chr6 90121193 90121233 -59395804 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1272 1395 251 32 202 chr6 90121233 90121616 -59395421 + RMER19C LTR ERVK 212 569 -42 1 1272 30 27 0 0 chr6 90121616 90121653 -59395384 + AT_rich Low_complexity Low_complexity 1 37 0 1 1272 795 124 25 0 chr6 90121654 90121775 -59395262 - B1_Mus1 SINE Alu 0 148 25 1 1272 276 226 0 0 chr6 90121762 90121824 -59395213 + RMER19C LTR ERVK 841 902 0 1 1272 395 172 39 39 chr6 90121825 90121928 -59395109 - L1_Mur2 LINE L1 -3090 2787 2685 1 1272 658 180 26 7 chr6 90121928 90122079 -59394958 - Lx2 LINE L1 0 6997 6844 1 1272 191 254 73 0 chr6 90123638 90123693 -59393344 + L2b LINE L2 3314 3372 -3 1 1272 28 71 0 0 chr6 90125260 90125316 -59391721 + AT_rich Low_complexity Low_complexity 1 56 0 1 1272 1315 286 99 32 chr6 90125720 90126506 -59390531 - Lx9 LINE L1 -220 7424 6586 1 1272 402 57 0 0 chr6 90126971 90127024 -59390013 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1272 465 19 0 0 chr6 90128038 90128092 -59388945 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1272 2496 87 26 0 chr6 90131050 90131396 -59385641 + RLTR9A2 LTR ERVK 1 355 -28 1 1272 253 189 274 0 chr6 90131469 90131564 -59385473 - RMER1B Other Other -4 1062 942 1 1272 2491 149 14 2 chr6 90131568 90131993 -59385044 + L1_Mus4 LINE L1 6205 6634 -2 1 1272 8607 172 34 11 chr6 90131993 90133174 -59383863 + L1_Mus2 LINE L1 3420 4625 -1252 1 1272 276 40 19 39 chr6 90133174 90133226 -59383811 + (CAAA)n Simple_repeat Simple_repeat 4 54 0 1 1272 8607 172 34 11 chr6 90133226 90133327 -59383710 + L1_Mus2 LINE L1 4626 4736 -1141 1 1272 4911 119 19 4 chr6 90133327 90134084 -59382953 + L1_Mus4 LINE L1 5860 6627 -9 1 1272 8607 176 26 117 chr6 90134084 90135266 -59381771 + L1_Mus2 LINE L1 4737 5323 -560 1 1272 1041 95 0 7 chr6 90135266 90135414 -59381623 + B1_Mm SINE Alu 1 147 0 1 1272 7304 93 12 50 chr6 90135414 90136667 -59380370 + L1_Mus2 LINE L1 5324 6566 0 1 1272 243 0 0 0 chr6 90136744 90136771 -59380266 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1272 1908 175 22 0 chr6 90136859 90137224 -59379813 - Lx LINE L1 0 6654 6282 1 1272 2585 135 7 0 chr6 90137224 90137654 -59379383 - L1_Mm LINE L1 -190 5693 5261 1 1272 432 309 39 10 chr6 90137682 90137885 -59379152 - Lx6 LINE L1 -4 7456 7248 1 1272 1247 256 57 68 chr6 90137885 90138678 -59378359 + L1VL2 LINE L1 9 603 -5732 1 1272 13757 119 9 10 chr6 90138679 90139095 -59377942 - L1Md_F LINE L1 -1138 4745 4340 1 1272 2455 86 31 8 chr6 90139095 90139448 -59377589 - L1Md_F2 LINE L1 -2 6580 6220 1 1272 13757 119 9 10 chr6 90139448 90141320 -59375717 - L1Md_F LINE L1 -1544 4339 2458 1 1272 1755 199 6 0 chr6 90141316 90141678 -59375359 - L1Md_F LINE L1 -5528 1088 725 1 1272 3258 57 0 0 chr6 90141718 90142123 -59374914 - L1Md_T LINE L1 0 6582 6178 1 1272 4804 124 12 1 chr6 90142389 90143541 -59373496 - L1_Mus4 LINE L1 -306 6330 5166 1 1272 1749 199 12 0 chr6 90143549 90143970 -59373067 - L1_Mur2 LINE L1 -2460 3417 2992 1 1272 359 69 35 0 chr6 90144183 90144241 -59372796 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 1 1272 1746 183 11 6 chr6 90144261 90144612 -59372425 - Lx3B LINE L1 -3 6970 6618 1 1272 2315 134 17 0 chr6 90144613 90145015 -59372022 + Lx3B LINE L1 6166 6574 -399 1 1272 600 263 193 11 chr6 90145034 90145215 -59371822 - B3 SINE B2 0 216 3 1 1272 1242 154 20 28 chr6 90145216 90145440 -59371597 - L1_Mur2 LINE L1 -2866 3011 2785 1 1272 1312 271 24 166 chr6 90145440 90146152 -59370885 + RMER19C LTR ERVK 1 611 0 1 1272 1242 154 20 28 chr6 90146152 90146180 -59370857 - L1_Mur2 LINE L1 -3093 2784 2761 1 1272 514 204 23 8 chr6 90146184 90146317 -59370720 - Lx2 LINE L1 -20 6977 6843 1 1272 1466 302 83 26 chr6 90149828 90150838 -59366199 - Lx9 LINE L1 -220 7424 6357 1 1272 906 133 0 0 chr6 90154040 90154168 -59362869 + B1_Mus1 SINE Alu 1 128 -20 1 1272 306 50 0 0 chr6 90154958 90154998 -59362039 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1272 1172 55 0 20 chr6 90154998 90155136 -59361901 - B1_Mm SINE Alu -9 138 1 1 1272 2524 99 55 0 chr6 90155399 90155762 -59361275 + RLTR9A2 LTR ERVK 1 383 0 1 1272 4296 66 16 3 chr6 90155837 90156444 -59360593 - L1Md_F2 LINE L1 -386 5497 4883 1 1272 342 25 0 0 chr6 90156442 90156482 -59360555 + L1Md_F2 LINE L1 5547 5586 -297 1 1272 7398 79 8 3 chr6 90156483 90157461 -59359576 + L1Md_F2 LINE L1 5588 6570 -12 1 1272 897 138 25 6 chr6 90157552 90157713 -59359324 + L1_Mus4 LINE L1 6202 6365 -271 1 1272 3884 96 37 4 chr6 90157713 90158259 -59358778 + LTRIS2 LTR ERV1 1 564 0 1 1272 844 131 106 12 chr6 90158890 90159060 -59357977 + RMER16-int LTR ERVK 141 326 -5080 1 1272 2902 111 9 2 chr6 90159046 90159490 -59357547 + RMER16-int LTR ERVK 677 1123 -4283 1 1272 33410 61 1 8 chr6 90159490 90164830 -59352207 + L1Md_T LINE L1 303 5589 -297 1 1272 8445 34 0 0 chr6 90164830 90165826 -59351211 + L1Md_T LINE L1 5590 6585 0 1 1272 28155 78 1 4 chr6 90165999 90169712 -59347325 + L1_Mm LINE L1 1887 5586 -297 1 1272 8632 47 1 11 chr6 90169712 90170718 -59346319 + L1Md_F2 LINE L1 5587 6582 0 1 1272 28155 78 1 4 chr6 90170718 90170732 -59346305 + L1_Mm LINE L1 5587 5601 -282 1 1272 4176 53 0 0 chr6 90170732 90171239 -59345798 + L1Md_F2 LINE L1 5080 5586 -297 1 1272 8294 59 1 6 chr6 90171239 90172228 -59344809 + L1Md_F2 LINE L1 5587 6570 -12 1 1272 1300 204 4 11 chr6 90172230 90172503 -59344534 - L1_Mm LINE L1 -945 4938 4668 1 1272 326 319 67 60 chr6 90172843 90172993 -59344044 + B3A SINE B2 4 154 -44 1 1272 432 0 0 0 chr6 90172996 90173044 -59343993 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1272 288 0 0 0 chr6 90173044 90173075 -59343962 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1272 594 0 0 0 chr6 90174891 90174957 -59342080 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1272 567 241 60 0 chr6 90175038 90175171 -59341866 - B1_Mus1 SINE Alu -6 142 2 1 1272 1084 98 7 7 chr6 90176007 90176143 -59340894 + B1_Mm SINE Alu 3 138 -9 1 1272 180 0 0 0 chr6 90176143 90176163 -59340874 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1272 261 114 68 0 chr6 90176299 90176343 -59340694 + Lx9 LINE L1 6982 7028 -616 1 1272 2144 267 101 48 chr6 90176402 90177125 -59339912 - RMER13A LTR ERVK -99 761 1 1 19 1859 198 90 0 chr6 90177125 90177549 -59339488 + Lx9 LINE L1 7023 7484 -160 1 1273 1653 198 12 12 chr6 90178357 90178679 -59338358 - ORR1A3 LTR MaLR 0 326 5 1 1273 429 200 105 0 chr6 90178681 90178776 -59338261 - ORR1A3-int LTR MaLR -1 1962 1858 1 1273 429 181 16 2 chr6 90178765 90178856 -59338181 - ORR1A3-int LTR MaLR -146 1817 1746 1 1273 17710 128 34 144 chr6 90178856 90181939 -59335098 + L1Md_F LINE L1 279 3275 -2608 1 1273 2983 134 30 113 chr6 90181939 90182534 -59334503 - RLTR1D LTR ERV1 0 605 60 1 1273 17710 128 34 144 chr6 90182534 90183676 -59333361 + L1Md_F LINE L1 3276 4387 -1496 1 1273 6672 11 0 0 chr6 90183676 90184380 -59332657 - L1Md_T LINE L1 0 6582 5879 1 1273 17710 137 41 179 chr6 90184380 90185681 -59331356 + L1Md_F LINE L1 4388 5685 -198 1 1273 210 37 0 0 chr6 90187196 90187223 -59329814 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 1 1273 6116 168 22 2 chr6 90187905 90189400 -59327637 + Lx LINE L1 5109 6622 -32 1 1273 4553 138 30 53 chr6 90189400 90190295 -59326742 + RLTR13A3 LTR ERVK 1 978 0 1 1273 282 294 33 17 chr6 90190355 90190474 -59326563 + L1_Rod LINE L1 3951 4105 -2038 1 1273 231 164 98 0 chr6 90190613 90190674 -59326363 + MTD-int LTR MaLR 1030 1096 -2 1 1273 1099 266 80 50 chr6 90190676 90191076 -59325961 + MTD LTR MaLR 1 412 -7 1 1273 303 71 0 0 chr6 90193432 90193474 -59323563 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 1 1273 402 21 0 0 chr6 90193523 90193570 -59323467 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1273 1220 37 0 0 chr6 90193570 90193705 -59323332 - B1_Mm SINE Alu -12 135 1 1 1273 269 323 46 0 chr6 90194820 90194885 -59322152 + B4A SINE B4 16 83 -209 1 1273 2412 216 22 17 chr6 90195107 90195644 -59321393 + L1_Mur2 LINE L1 4535 5074 -803 1 1273 245 235 161 73 chr6 90195668 90195792 -59321245 - ID_B1 SINE B4 -5 219 85 1 1273 631 87 0 19 chr6 90198794 90198900 -59318137 + (TCC)n Simple_repeat Simple_repeat 3 106 0 2 1273 21 71 0 0 chr6 90199120 90199162 -59317875 + AT_rich Low_complexity Low_complexity 1 42 0 2 1273 5166 166 21 5 chr6 90199167 90200014 -59317023 - Lx LINE L1 0 6654 5794 2 1273 745 73 37 0 chr6 90200011 90200120 -59316917 + Lx LINE L1 6537 6649 -5 2 1273 2542 167 30 21 chr6 90200153 90200526 -59316511 + RLTR20A2 LTR ERVK 110 479 -99 2 1273 414 0 0 0 chr6 90200526 90200572 -59316465 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1273 2542 167 30 21 chr6 90200572 90200663 -59316374 + RLTR20A2 LTR ERVK 480 577 -1 2 1273 253 263 31 170 chr6 90200797 90201026 -59316011 + MYSERV16_I-int LTR ERVK 101 297 -2545 2 1273 1010 208 62 20 chr6 90201538 90201877 -59315160 + MYSERV16_I-int LTR ERVK 1 221 -2105 2 1273 18728 164 30 133 chr6 90201887 90204526 -59312511 + L1_Mus3 LINE L1 416 2331 -3555 2 1273 378 0 0 0 chr6 90204526 90204568 -59312469 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 1273 20843 133 17 51 chr6 90204568 90205400 -59311637 + L1_Mus3 LINE L1 2329 3153 -2733 2 1273 1061 104 0 0 chr6 90205400 90205544 -59311493 + B1_Mus1 SINE Alu 5 148 0 2 1273 20843 133 17 51 chr6 90205544 90205873 -59311164 + L1_Mus3 LINE L1 3154 3481 -2405 2 1273 192 40 0 0 chr6 90205873 90205898 -59311139 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2 1273 20843 117 14 34 chr6 90205898 90209020 -59308017 + L1_Mus3 LINE L1 3479 6633 -5 2 1273 426 186 25 70 chr6 90209022 90209157 -59307880 + MYSERV16_I-int LTR ERVK 725 814 -1512 2 1273 25456 136 39 21 chr6 90209223 90215350 -59301687 - L1_Mus3 LINE L1 -1 6637 397 2 1273 259 100 115 16 chr6 90215351 90215412 -59301625 + MYSERV16_I-int LTR ERVK 875 941 -1385 2 1273 4720 152 68 25 chr6 90215402 90216321 -59300716 + MYSERV16_I-int LTR ERVK 1058 2015 -311 2 1273 3336 165 48 21 chr6 90216321 90216945 -59300092 - RLTR26 LTR ERVK 0 642 2 2 1273 1327 155 74 0 chr6 90216945 90217216 -59299821 + MYSERV16_I-int LTR ERVK 2009 2299 -27 2 1273 3470 156 24 28 chr6 90217220 90217695 -59299342 + RLTR20A2 LTR ERVK 1 479 -99 2 1273 414 0 0 0 chr6 90217695 90217741 -59299296 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1273 3470 156 24 28 chr6 90217741 90217845 -59299192 + RLTR20A2 LTR ERVK 480 577 -1 2 1273 26 30 0 0 chr6 90218009 90218042 -59298995 + AT_rich Low_complexity Low_complexity 1 33 0 2 1273 40 0 0 0 chr6 90220363 90220403 -59296634 + AT_rich Low_complexity Low_complexity 1 40 0 2 1273 180 213 0 0 chr6 90220468 90220529 -59296508 + GA-rich Low_complexity Low_complexity 2 62 0 2 1273 337 248 94 47 chr6 90220568 90220695 -59296342 + L1MB3 LINE L1 5761 5893 -290 2 1273 862 227 77 0 chr6 90220998 90221192 -59295845 + B3 SINE B2 1 209 -7 2 1273 321 259 47 12 chr6 90221368 90221454 -59295583 - MTD LTR MaLR -318 101 13 2 1273 615 27 0 0 chr6 90221474 90221547 -59295490 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 1273 7753 97 19 21 chr6 90221547 90224317 -59292720 - L1VL4 LINE L1 -2695 3188 565 2 1273 277 167 0 0 chr6 90224317 90224359 -59292678 - L1VL4 LINE L1 -6260 397 356 2 1273 314 207 94 35 chr6 90224530 90224615 -59292422 + ID_B1 SINE B4 135 224 0 2 1273 346 132 87 14 chr6 90224547 90224616 -59292421 + B1F SINE Alu 76 149 0 2 1273 21 0 0 0 chr6 90224961 90224982 -59292055 + AT_rich Low_complexity Low_complexity 1 21 0 2 1273 239 206 162 0 chr6 90225153 90225221 -59291816 + Lx5 LINE L1 6966 7044 -6 2 1273 308 330 66 0 chr6 90225325 90225431 -59291606 + ID_B1 SINE B4 112 224 0 2 1273 797 259 89 27 chr6 90225632 90225890 -59291147 - RLTR18B LTR ERVK -2 510 237 2 1273 244 296 57 80 chr6 90226018 90226054 -59290983 + B4 SINE B4 54 87 -205 2 1273 354 292 11 33 chr6 90226054 90226146 -59290891 + B1F SINE Alu 2 91 -58 2 1273 336 353 54 67 chr6 90226204 90226353 -59290684 + B4 SINE B4 144 290 -2 2 1273 651 265 0 84 chr6 90226460 90226674 -59290363 + B3A SINE B2 3 198 0 2 1273 395 269 95 13 chr6 90226745 90227022 -59290015 + L1M4 LINE L1 2316 2614 -3529 2 1273 5336 165 31 29 chr6 90227022 90228778 -59288259 + L1Md_F LINE L1 258 2018 -1799 2 1273 34763 96 12 11 chr6 90228778 90235115 -59281922 - L1Md_F2 LINE L1 0 6582 242 2 1273 7834 98 3 49 chr6 90235115 90235670 -59281367 + L1Md_F LINE L1 2005 2543 -1274 2 1273 1023 95 0 49 chr6 90235670 90235814 -59281223 + B1_Mus2 SINE Alu 1 137 -10 2 1273 7834 98 3 49 chr6 90235814 90235926 -59281111 + L1Md_F LINE L1 2544 2618 -1199 2 1273 1155 44 0 0 chr6 90235926 90236061 -59280976 + B1_Mus1 SINE Alu 2 136 -12 2 1273 351 0 0 0 chr6 90236061 90236100 -59280937 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2 1273 7834 98 3 49 chr6 90236100 90236684 -59280353 + L1Md_F LINE L1 2619 3200 -617 2 1273 243 212 75 0 chr6 90236738 90236818 -59280219 + L1M2 LINE L1 2745 2830 -3313 2 1273 909 156 0 0 chr6 90236828 90236903 -59280134 + B1_Mur4 SINE Alu 6 140 -10 2 1273 1029 291 154 30 chr6 90236903 90236963 -59280074 + MTE2a-int LTR MaLR 1052 1110 -470 2 1273 221 0 0 33 chr6 90236963 90236993 -59280044 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1273 1029 291 154 30 chr6 90236993 90237393 -59279644 + MTE2a-int LTR MaLR 1111 1569 -11 2 1273 505 285 31 123 chr6 90237378 90237653 -59279384 + MTE2a LTR MaLR 18 312 -107 2 1273 308 130 12 49 chr6 90237653 90237734 -59279303 + CT-rich Low_complexity Low_complexity 3 80 0 2 1273 1004 104 0 28 chr6 90237746 90237924 -59279113 + (TCTCCC)n Simple_repeat Simple_repeat 5 177 0 2 1273 282 289 40 20 chr6 90238008 90238107 -59278930 + LTR83 LTR ERVL 564 664 -116 2 1273 191 75 0 70 chr6 90238877 90238920 -59278117 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2 1273 6261 42 29 16 chr6 90239613 90240484 -59276553 - L1Md_F2 LINE L1 -206 6376 5495 2 1273 1405 119 0 18 chr6 90240484 90240706 -59276331 + L1Md_F2 LINE L1 6364 6581 -1 2 1273 290 256 192 31 chr6 90240928 90241089 -59275948 - L2c LINE L2 -201 3186 3000 2 1273 22 35 0 0 chr6 90241172 90241201 -59275836 + AT_rich Low_complexity Low_complexity 1 29 0 2 1273 7072 29 0 1 chr6 90241203 90242019 -59275018 + L1Md_T LINE L1 5766 6580 -2 2 1273 922 217 147 8 chr6 90242098 90242363 -59274674 - L1_Mur3 LINE L1 -1826 4054 3753 2 1273 569 251 157 26 chr6 90242414 90242643 -59274394 + RLTR10A LTR ERVK 140 398 -13 2 1273 402 219 98 42 chr6 90242660 90242803 -59274234 + RLTR10-int LTR ERVK 318 468 -1519 2 1273 834 251 87 75 chr6 90243059 90243486 -59273551 + IAP-d-int LTR ERVK 2241 2672 -3870 2 1273 2216 282 54 48 chr6 90243487 90246029 -59271008 + IAP-d-int LTR ERVK 992 5080 -1462 2 1273 615 228 162 33 chr6 90246069 90246310 -59270727 + RLTR10A LTR ERVK 140 411 0 2 1273 4093 140 45 14 chr6 90246310 90247080 -59269957 - L1_Mur2 LINE L1 -2120 3757 2964 2 1273 228 286 22 56 chr6 90247949 90248038 -59268999 + LTR84a LTR ERVL 168 253 -504 2 1273 284 316 38 69 chr6 90248374 90248534 -59268503 + HAL1 LINE L1 575 729 -1778 2 1273 312 27 0 0 chr6 90248652 90248689 -59268348 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 2 1273 398 280 43 16 chr6 90249172 90249357 -59267680 - Lx7 LINE L1 0 7696 7507 2 1273 445 257 122 48 chr6 90249367 90249389 -59267648 + L1MC4 LINE L1 1096 1114 -5101 2 1273 784 172 90 0 chr6 90249389 90249523 -59267514 + B1_Mur4 SINE Alu 5 150 0 2 1273 445 257 122 48 chr6 90249523 90249729 -59267308 + L1MC4 LINE L1 1115 1341 -4874 2 1273 3656 163 114 30 chr6 90249756 90250522 -59266515 - Lx7 LINE L1 -329 7367 6538 2 1273 942 105 78 0 chr6 90250522 90250675 -59266362 - L1_Mur3 LINE L1 -1261 4619 4455 2 1273 2482 164 103 8 chr6 90250814 90251301 -59265736 - MTC-int LTR MaLR -725 533 1 2 1273 405 0 0 0 chr6 90253710 90253755 -59263282 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1273 4215 80 0 2 chr6 90257132 90257681 -59259356 + L1Md_T LINE L1 6035 6582 0 2 1273 228 245 229 48 chr6 90257867 90258094 -59258943 - MLT1H-int LTR MaLR -248 1161 894 2 1273 862 205 111 0 chr6 90260386 90260576 -59256461 - B3 SINE B2 -4 212 2 2 1273 279 0 0 0 chr6 90260793 90260824 -59256213 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1273 962 204 79 4 chr6 90262104 90262345 -59254692 + L1MB7 LINE L1 5660 5918 -266 2 1273 3312 38 35 0 chr6 90262777 90263174 -59253863 + IAPLTR2a LTR ERVK 1 411 0 2 1273 1019 132 25 85 chr6 90263175 90263374 -59253663 + IAPEz-int LTR ERVK 9 195 -6286 2 1273 234 267 0 0 chr6 90263382 90263427 -59253610 + RLTR27 LTR ERVK 231 275 -34 2 1273 285 83 0 0 chr6 90263427 90263463 -59253574 + IAPEz-int LTR ERVK 145 180 -7401 2 1273 253 244 0 0 chr6 90263463 90263508 -59253529 + RLTR27 LTR ERVK 231 275 -34 2 1273 3533 62 10 16 chr6 90263508 90264081 -59252956 + IAPEz-int LTR ERVK 168 662 -5819 2 1273 2759 67 0 3 chr6 90264081 90264424 -59252613 + IAPEz-int LTR ERVK 1359 1700 -4781 2 1273 6409 48 34 18 chr6 90264417 90265233 -59251804 + IAPEz-int LTR ERVK 5651 6479 -2 2 1273 3338 33 35 0 chr6 90265235 90265632 -59251405 + IAPLTR2a LTR ERVK 1 411 0 2 1273 246 285 104 30 chr6 90266359 90266507 -59250530 - MIRb SINE MIR -85 177 24 2 1273 243 302 115 0 chr6 90267241 90267337 -59249700 + L2b LINE L2 3253 3359 -16 2 1273 422 90 0 29 chr6 90267416 90267485 -59249552 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 2 1273 216 0 0 0 chr6 90267765 90267789 -59249248 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1273 378 0 0 0 chr6 90267789 90267830 -59249207 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1273 1138 152 66 5 chr6 90269583 90269795 -59247242 + URR1B DNA MER1_type 1 225 0 2 1273 246 239 0 0 chr6 90271086 90271132 -59245905 + tRNA-Leu-TTA tRNA tRNA 39 84 -2 2 1273 1688 195 84 52 chr6 90271143 90271549 -59245488 - MTD LTR MaLR 0 419 1 2 1273 3176 12 0 0 chr6 90272784 90273130 -59243907 + ORR1A0 LTR MaLR 1 346 0 2 1273 1456 134 9 5 chr6 90273194 90273412 -59243625 - URR1B DNA MER1_type -1 224 6 2 1273 577 287 29 65 chr6 90273412 90273432 -59243605 + CYRA11_Mm Unknown Y-chromosome 223 401 -216 2 1273 226 235 122 100 chr6 90276303 90276393 -59240644 + MT2B LTR ERVL 173 264 -337 2 1273 632 128 110 0 chr6 90276317 90276426 -59240611 + B1_Mur4 SINE Alu 25 145 -5 2 1273 241 244 63 13 chr6 90277088 90277167 -59239870 + ID SINE ID 2 84 -140 2 1273 219 206 191 0 chr6 90277375 90277443 -59239594 + MIR SINE MIR 112 192 -70 2 1273 207 312 43 26 chr6 90279087 90279202 -59237835 - MIR SINE MIR -8 254 138 2 1273 325 290 113 33 chr6 90279228 90279378 -59237659 - MER2 DNA MER2_type -43 302 141 2 1273 257 308 9 63 chr6 90279479 90279590 -59237447 - MIR SINE MIR -146 116 12 2 1273 336 301 53 105 chr6 90280502 90280654 -59236383 - MER21B LTR ERV1 -202 661 518 2 1273 4571 74 5 11 chr6 90280659 90281276 -59235761 + L1_Mus4 LINE L1 6024 6636 0 2 1273 264 232 21 0 chr6 90281276 90281371 -59235666 + Lx9 LINE L1 7547 7643 -1 2 1273 1292 66 5 72 chr6 90281377 90281537 -59235500 + B2_Mm1t SINE B2 1 160 -33 2 1273 215 31 31 0 chr6 90281537 90281569 -59235468 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2 1273 1292 66 5 72 chr6 90281569 90281603 -59235434 + B2_Mm1t SINE B2 161 182 -11 2 1273 235 226 0 0 chr6 90281839 90281901 -59235136 + A-rich Low_complexity Low_complexity 1 62 0 2 1273 374 330 118 36 chr6 90281913 90282193 -59234844 - MER21B LTR ERV1 -344 519 217 2 1273 252 272 119 4 chr6 90282448 90282567 -59234470 + MIR3 SINE MIR 43 178 -98 2 1273 297 0 0 0 chr6 90284696 90284729 -59232308 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1273 232 414 6 0 chr6 90284745 90284919 -59232118 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 1273 435 68 0 0 chr6 90284942 90285001 -59232036 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1273 1228 55 7 0 chr6 90285741 90285887 -59231150 + B1_Mm SINE Alu 1 147 0 2 1273 412 269 176 27 chr6 90286244 90286466 -59230571 - MLT1D LTR MaLR -237 268 14 2 1273 198 0 0 0 chr6 90286662 90286684 -59230353 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1273 214 191 0 41 chr6 90287470 90287519 -59229518 + C-rich Low_complexity Low_complexity 6 52 0 2 1273 679 206 20 47 chr6 90289299 90289447 -59227590 + B1_Mur2 SINE Alu 1 144 -5 3 1273 189 0 0 0 chr6 90289564 90289585 -59227452 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 3 1273 270 279 18 71 chr6 90289724 90289836 -59227201 + MER2B DNA MER2_type 202 307 -29 3 1273 346 258 106 24 chr6 90290735 90290783 -59226254 + B4A SINE B4 29 86 -206 3 1273 479 237 99 43 chr6 90290783 90290924 -59226113 + B1F1 SINE Alu 1 149 0 3 1273 300 218 0 0 chr6 90290933 90290988 -59226049 + tRNA-Ala-GCY_ tRNA tRNA 13 67 -8 3 1273 206 271 17 0 chr6 90291358 90291417 -59225620 + MIR SINE MIR 127 186 -76 3 1273 331 215 204 0 chr6 90291620 90291713 -59225324 - PB1D10 SINE Alu -2 115 4 3 1273 1227 124 0 17 chr6 90292100 90292280 -59224757 + B2_Mm2 SINE B2 1 177 -18 3 1273 451 189 16 0 chr6 90292280 90292407 -59224630 + (TAGA)n Simple_repeat Simple_repeat 2 130 0 3 1273 1116 231 39 0 chr6 90293369 90293577 -59223460 - B3 SINE B2 0 216 1 3 1273 320 190 0 12 chr6 90294292 90294377 -59222660 + CT-rich Low_complexity Low_complexity 1 84 0 3 1273 229 234 101 25 chr6 90294900 90294979 -59222058 - MLT1J LTR MaLR -9 503 419 3 1273 294 310 0 54 chr6 90295577 90295594 -59221443 - ID_B1 SINE B4 -124 168 82 3 1273 338 239 84 0 chr6 90295594 90295665 -59221372 - PB1D10 SINE Alu -40 77 1 3 1273 255 342 0 0 chr6 90296023 90296169 -59220868 + (CA)n Simple_repeat Simple_repeat 1 146 0 3 1273 239 311 101 28 chr6 90296849 90296958 -59220079 + MIR SINE MIR 103 219 -43 3 1273 243 376 126 14 chr6 90300270 90300564 -59216473 - MER63D DNA AcHobo -707 354 28 3 1273 231 302 0 65 chr6 90300759 90300851 -59216186 + L2b LINE L2 3290 3375 0 3 1273 798 297 83 3 chr6 90301493 90301844 -59215193 + L1MB3 LINE L1 5715 6093 -90 3 1273 469 161 13 4 chr6 90301903 90301998 -59215039 - MTC LTR MaLR 0 419 302 3 1273 1606 131 60 109 chr6 90302098 90302454 -59214583 - MTC LTR MaLR -72 307 1 3 1273 375 288 72 0 chr6 90303098 90303209 -59213828 - MTEb LTR MaLR -260 119 1 3 1273 333 172 0 0 chr6 90303292 90303356 -59213681 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 3 1273 287 260 93 74 chr6 90303356 90303518 -59213519 - L1MB4 LINE L1 -21 6162 5998 3 1273 601 329 58 12 chr6 90303676 90303916 -59213121 - MER2 DNA MER2_type -6 339 89 3 1273 306 0 0 0 chr6 90303941 90303975 -59213062 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1273 757 312 62 25 chr6 90303983 90304259 -59212778 - B4A SINE B4 0 292 7 3 1273 576 221 130 0 chr6 90304274 90304405 -59212632 - B1_Mur2 SINE Alu -1 148 1 3 1273 258 242 68 98 chr6 90304746 90304911 -59212126 + MIR SINE MIR 88 267 -1 3 1273 222 331 79 40 chr6 90306309 90306435 -59210602 - L2b LINE L2 -20 3355 3225 3 1273 293 357 25 31 chr6 90307137 90307299 -59209738 + MIR SINE MIR 22 182 -80 3 1273 221 309 81 23 chr6 90307597 90307683 -59209354 + B4A SINE B4 31 121 -171 3 1273 348 211 0 0 chr6 90307850 90307926 -59209111 + CT-rich Low_complexity Low_complexity 3 78 0 3 1274 306 307 120 91 chr6 90309444 90309720 -59207317 - ORR1E LTR MaLR -1 358 75 3 1274 266 228 214 19 chr6 90309885 90309988 -59207049 - MIRb SINE MIR -122 146 24 3 1274 513 0 0 0 chr6 90310020 90310077 -59206960 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1274 842 188 47 52 chr6 90311679 90311710 -59205327 - B2_Mm2 SINE B2 -5 190 157 3 1274 423 0 0 0 chr6 90311710 90311757 -59205280 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1274 988 178 26 1 chr6 90311757 90311916 -59205121 - B3 SINE B2 -55 161 1 3 1274 225 0 0 0 chr6 90314171 90314196 -59202841 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1274 293 255 118 0 chr6 90314637 90314739 -59202298 + MER3 DNA MER1_type 56 169 -40 3 1274 333 0 0 0 chr6 90314907 90314944 -59202093 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1274 306 0 0 0 chr6 90314945 90314979 -59202058 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 1274 185 0 40 0 chr6 90315591 90315616 -59201421 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 3 1274 4412 149 101 69 chr6 90315642 90316516 -59200521 - RMER19B LTR ERVK 0 902 1 3 1274 733 297 122 13 chr6 90316624 90317016 -59200021 - L1MB3 LINE L1 -186 5997 5563 3 1274 449 277 53 9 chr6 90317082 90317195 -59199842 + RSINE1 SINE B4 3 120 -45 3 1274 345 47 0 0 chr6 90317201 90317244 -59199793 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1274 3017 155 10 0 chr6 90317330 90317828 -59199209 - ORR1A2-int LTR MaLR -1460 503 1 3 1274 2444 82 28 0 chr6 90317828 90318146 -59198891 - ORR1A2 LTR MaLR 0 327 1 3 1274 509 260 203 7 chr6 90318381 90318652 -59198385 - L1MB8 LINE L1 -203 5975 5652 3 1274 22 35 0 0 chr6 90319825 90319854 -59197183 + GC_rich Low_complexity Low_complexity 1 29 0 3 1274 21 0 0 0 chr6 90319963 90319984 -59197053 + GC_rich Low_complexity Low_complexity 1 21 0 3 1274 282 103 0 0 chr6 90321342 90321381 -59195656 + RLTR15 LTR ERVK 321 359 0 3 1274 506 289 77 18 chr6 90322078 90322300 -59194737 + MER106B DNA MER1_type 35 269 -790 3 1274 1581 200 99 33 chr6 90324204 90324597 -59192440 - MTD LTR MaLR 0 419 1 3 1274 273 318 138 26 chr6 90325433 90325585 -59191452 + MIR SINE MIR 48 216 -46 3 1274 390 42 0 0 chr6 90326859 90326907 -59190130 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 3 1274 1650 195 80 42 chr6 90327100 90327520 -59189517 - MT2A LTR ERVL 0 601 9 3 1274 276 130 37 0 chr6 90327533 90327587 -59189450 - MERVL_2A-int LTR ERVL 0 5761 5706 3 1274 403 185 79 56 chr6 90327587 90327713 -59189324 - ORR1A3-int LTR MaLR -1324 639 511 3 1274 1577 135 35 98 chr6 90327717 90328086 -59188951 - MERVL_2A-int LTR ERVL -189 5572 5227 3 1274 2195 171 39 29 chr6 90328096 90328505 -59188532 - MTC LTR MaLR -8 413 1 3 1274 403 314 24 95 chr6 90328534 90328703 -59188334 - RSINE1 SINE B4 -6 159 3 3 1274 1107 76 28 0 chr6 90329563 90329707 -59187330 + B1_Mus1 SINE Alu 1 148 0 3 1274 180 0 0 0 chr6 90329734 90329754 -59187283 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 3 1274 968 132 41 7 chr6 90330990 90331135 -59185902 + B1_Mur4 SINE Alu 1 150 0 3 1274 389 337 10 69 chr6 90332615 90332819 -59184218 + MIR3 SINE MIR 14 205 -3 3 1274 722 109 8 0 chr6 90335475 90335594 -59181443 + (TC)n Simple_repeat Simple_repeat 1 120 0 3 1274 279 300 146 7 chr6 90335809 90335960 -59181077 - L1MC5 LINE L1 -731 7230 7059 3 1274 244 285 152 0 chr6 90336475 90336640 -59180397 - L1MC4 LINE L1 -231 7651 7462 3 1274 365 298 9 9 chr6 90336997 90337102 -59179935 - MER77 LTR ERVL -378 229 125 3 1274 1285 52 46 0 chr6 90337141 90337315 -59179722 - B2_Mm1t SINE B2 -10 183 2 3 1274 902 276 9 0 chr6 90337315 90337525 -59179512 - B3 SINE B2 -2 214 3 3 1274 489 261 113 5 chr6 90337891 90338095 -59178942 - L1MC4 LINE L1 -1126 6916 6691 3 1274 373 274 64 64 chr6 90340102 90340305 -59176732 - B4 SINE B4 -88 204 2 3 1274 232 355 108 0 chr6 90340384 90340477 -59176560 + ID_B1 SINE B4 86 188 -36 3 1274 208 356 111 6 chr6 90341380 90341561 -59175476 - L2 LINE L2 -606 2813 2614 3 1274 267 233 63 12 chr6 90344510 90344596 -59172441 - B1F SINE Alu -10 139 9 3 1274 2711 189 76 4 chr6 90344628 90345179 -59171858 - Lx2B LINE L1 -4 6996 6406 3 1274 345 24 0 0 chr6 90346024 90346066 -59170971 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 3 1274 379 167 0 0 chr6 90346888 90346948 -59170089 + PB1D10 SINE Alu 17 76 -41 3 1274 221 0 0 33 chr6 90347136 90347166 -59169871 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1274 1065 44 15 0 chr6 90347166 90347302 -59169735 - B1_Mus2 SINE Alu -9 138 1 3 1274 1207 228 21 32 chr6 90347688 90347969 -59169068 + Lx5 LINE L1 6733 7010 -40 3 1274 203 32 65 0 chr6 90347970 90348001 -59169036 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1274 224 59 0 29 chr6 90348450 90348485 -59168552 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1274 764 50 0 10 chr6 90348506 90348608 -59168429 - B2_Mm2 SINE B2 -94 101 1 3 1274 312 270 14 0 chr6 90351365 90351439 -59165598 + PB1D10 SINE Alu 43 117 0 3 1274 276 100 0 0 chr6 90351755 90351795 -59165242 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 3 1274 560 179 0 36 chr6 90351795 90351905 -59165132 - PB1D9 SINE Alu -5 115 10 3 1274 324 0 0 0 chr6 90352333 90352369 -59164668 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1274 279 292 55 55 chr6 90357217 90357362 -59159675 - L1MC LINE L1 -2039 4107 3963 3 1274 284 288 60 15 chr6 90357443 90357577 -59159460 - L1MC LINE L1 -2454 3692 3553 3 1274 400 202 0 28 chr6 90357617 90357724 -59159313 + CT-rich Low_complexity Low_complexity 1 104 0 3 1274 499 292 161 0 chr6 90357727 90357895 -59159142 - B4 SINE B4 -97 195 1 3 1274 225 65 0 0 chr6 90358008 90358039 -59158998 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3 1274 193 316 40 0 chr6 90358330 90358406 -59158631 + L2a LINE L2 3029 3107 -319 3 1274 242 356 77 0 chr6 90360514 90360618 -59156419 + RCHARR1 DNA MER1_type 44 155 -819 3 1274 1190 224 109 3 chr6 90360696 90361045 -59155992 + RCHARR1 DNA MER1_type 572 957 -17 3 1274 346 245 194 42 chr6 90361813 90362030 -59155007 + MER74A LTR ERVL 18 267 -291 3 1274 801 58 16 8 chr6 90364050 90364171 -59152866 + (GGGAGA)n Simple_repeat Simple_repeat 2 123 0 3 1274 1478 16 0 51 chr6 90368412 90368609 -59148428 + B2_Mm1a SINE B2 1 187 -6 3 1274 1127 198 119 81 chr6 90368688 90369025 -59148012 + MTE2a LTR MaLR 29 366 -13 3 1274 1046 211 45 38 chr6 90370186 90370618 -59146419 + RLTR28 LTR ERVL 29 495 -29 3 1274 949 177 70 15 chr6 90370635 90370836 -59146201 + B3 SINE B2 5 216 0 3 1274 291 184 105 44 chr6 90370847 90370961 -59146076 + Lx8 LINE L1 7353 7473 0 3 1274 1416 149 52 30 chr6 90371580 90371849 -59145188 - MTC LTR MaLR -39 382 108 4 1274 1127 68 0 0 chr6 90371879 90372025 -59145012 + B1_Mus2 SINE Alu 2 147 0 4 1274 611 114 114 0 chr6 90372054 90372159 -59144878 - MTC LTR MaLR -301 120 4 4 1274 242 29 29 0 chr6 90372434 90372469 -59144568 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1274 957 153 77 21 chr6 90373725 90373919 -59143118 - URR1B DNA MER1_type 0 225 21 4 1274 193 324 18 53 chr6 90374865 90374979 -59142058 - L2a LINE L2 -251 3175 3066 4 1274 505 239 43 0 chr6 90374981 90375098 -59141939 + RSINE1 SINE B4 3 124 -41 4 1274 351 0 0 0 chr6 90375099 90375138 -59141899 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1274 1195 244 61 28 chr6 90375151 90375305 -59141732 + Lx9 LINE L1 6175 6395 -1249 4 1274 387 0 0 0 chr6 90375305 90375348 -59141689 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 4 1274 1195 273 148 5 chr6 90375348 90375693 -59141344 + Lx9 LINE L1 6396 6798 -846 4 1274 1170 177 232 28 chr6 90375720 90375830 -59141207 + MTC LTR MaLR 1 118 -303 4 1274 180 0 0 0 chr6 90375830 90375850 -59141187 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1274 1170 182 225 28 chr6 90375850 90376068 -59140969 + MTC LTR MaLR 119 383 -38 4 1274 538 227 6 124 chr6 90376304 90376465 -59140572 - B1F SINE Alu -5 144 3 4 1274 851 285 115 32 chr6 90376911 90377321 -59139716 + MLT1C LTR MaLR 16 459 -8 4 1274 21 36 0 0 chr6 90378520 90378548 -59138489 + GC_rich Low_complexity Low_complexity 1 28 0 4 1274 359 21 0 20 chr6 90379050 90379099 -59137938 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 4 1274 799 151 5 38 chr6 90379263 90379449 -59137588 + GA-rich Low_complexity Low_complexity 1 180 0 4 1274 620 287 104 54 chr6 90379759 90380057 -59136980 + RMER5 LTR ERV1 1 313 -221 4 1274 229 226 221 23 chr6 90380051 90380137 -59136900 + RMER5 LTR ERV1 432 534 0 4 1274 558 191 36 0 chr6 90380369 90380479 -59136558 - RSINE1 SINE B4 -40 125 12 4 1274 1151 41 0 7 chr6 90380614 90380762 -59136275 + B1_Mm SINE Alu 1 147 0 4 1274 288 172 0 0 chr6 90380947 90381005 -59136032 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1274 2188 97 50 3 chr6 90382592 90382935 -59134102 + ORR1B2 LTR MaLR 1 359 -8 4 1274 267 270 190 0 chr6 90383454 90383554 -59133483 + L1MB7 LINE L1 6014 6132 -52 4 1274 269 26 26 0 chr6 90384214 90384252 -59132785 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1274 400 264 78 0 chr6 90385059 90385187 -59131850 - B1F SINE Alu -5 144 1 4 1274 213 39 0 0 chr6 90385414 90385440 -59131597 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1274 875 265 144 25 chr6 90385920 90386287 -59130750 + RMER5 LTR ERV1 33 443 -91 4 1274 228 299 91 0 chr6 90386702 90386779 -59130258 + Lx8 LINE L1 7034 7117 -356 4 1274 293 225 50 0 chr6 90386920 90387000 -59130037 + RMER15 LTR ERVL 420 503 -72 4 1274 954 50 0 0 chr6 90387003 90387123 -59129914 + (CTTTG)n Simple_repeat Simple_repeat 5 124 0 4 1274 250 93 70 0 chr6 90387123 90387166 -59129871 - B1F SINE Alu -14 135 90 4 1274 247 240 188 10 chr6 90387166 90387224 -59129813 - ID_B1 SINE B4 -14 210 92 4 1274 382 249 201 23 chr6 90387679 90387938 -59129099 - HAL1 LINE L1 -650 1857 1553 4 1274 34197 35 1 1 chr6 90387979 90394051 -59122986 + L1Md_T LINE L1 1 5589 -297 4 1274 8517 11 3 0 chr6 90394051 90395044 -59121993 + L1Md_T LINE L1 5590 6585 0 4 1274 336 111 0 0 chr6 90395051 90395114 -59121923 + (A)n Simple_repeat Simple_repeat 1 63 0 4 1274 653 258 7 13 chr6 90395126 90395279 -59121758 + RSINE1 SINE B4 2 153 -12 4 1274 776 330 101 35 chr6 90395390 90395786 -59121251 + MLT1G1 LTR MaLR 141 562 -17 4 1274 191 313 29 29 chr6 90397607 90397676 -59119361 - MIRm SINE MIR -99 177 109 4 1274 329 310 10 0 chr6 90398121 90398221 -59118816 + MIR SINE MIR 18 118 -144 4 1274 235 291 37 37 chr6 90398573 90398655 -59118382 + L2b LINE L2 2977 3058 -317 4 1274 336 191 52 21 chr6 90399593 90399687 -59117350 - PB1D7 SINE Alu -18 131 39 4 1274 4095 77 9 5 chr6 90399736 90400310 -59116727 - L1Md_F2 LINE L1 -9 6573 5998 4 1274 953 68 90 0 chr6 90401986 90402119 -59114918 + B1_Mus2 SINE Alu 2 146 -1 4 1274 765 245 36 58 chr6 90402544 90402769 -59114268 + ID_B1 SINE B4 1 220 -4 4 1274 735 232 86 0 chr6 90402988 90403186 -59113851 - B3 SINE B2 0 216 2 4 1274 820 107 164 0 chr6 90403211 90403370 -59113667 - B2_Mm2 SINE B2 -10 185 1 4 1274 370 299 8 57 chr6 90403938 90404062 -59112975 - PB1D7 SINE Alu 0 120 3 4 1274 276 235 0 29 chr6 90404135 90404205 -59112832 + ID4_ SINE ID 2 69 -14 4 1274 397 361 42 0 chr6 90404811 90405002 -59112035 - RMER15 LTR ERVL 0 575 377 4 1274 958 191 17 0 chr6 90406702 90406875 -59110162 + B3 SINE B2 41 216 0 4 1274 777 261 120 11 chr6 90407808 90408083 -59108954 + MLT1B LTR MaLR 2 306 -84 4 1274 363 23 0 0 chr6 90408380 90408424 -59108613 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1274 221 226 0 19 chr6 90408432 90408486 -59108551 - ID4 SINE ID -6 77 25 4 1274 253 245 0 0 chr6 90408799 90408848 -59108189 + ID4 SINE ID 16 64 -19 4 1274 21 0 0 0 chr6 90409086 90409107 -59107930 + AT_rich Low_complexity Low_complexity 1 21 0 4 1274 807 182 122 5 chr6 90409107 90409295 -59107742 + B3 SINE B2 1 210 -6 4 1274 334 206 0 0 chr6 90409367 90409430 -59107607 + PB1D10 SINE Alu 54 116 -1 4 1274 432 262 177 26 chr6 90409679 90409871 -59107166 - RMER21B LTR ERV1 -275 567 347 4 1274 646 346 17 12 chr6 90410575 90410815 -59106222 - B4A SINE B4 -2 290 50 4 1274 329 314 187 11 chr6 90410823 90411106 -59105931 - L2a LINE L2 -83 3343 3011 4 1274 185 197 60 15 chr6 90411184 90411251 -59105786 - L2a LINE L2 -542 2877 2808 4 1274 376 253 0 0 chr6 90414400 90414475 -59102562 - PB1D10 SINE Alu -38 79 5 4 1274 217 263 14 0 chr6 90414772 90414833 -59102204 - MIR SINE MIR -152 124 61 4 1274 255 277 32 89 chr6 90415852 90415975 -59101062 - MER53 DNA hAT -77 116 1 4 1274 387 0 0 0 chr6 90420220 90420263 -59096774 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1274 847 260 93 19 chr6 90420283 90420542 -59096495 - B4A SINE B4 -14 278 1 4 1274 885 98 38 0 chr6 90420752 90420885 -59096152 + B1_Mur4 SINE Alu 2 139 -11 4 1274 198 298 34 48 chr6 90421967 90422056 -59094981 - MIR SINE MIR -82 186 99 4 1274 256 161 109 31 chr6 90423045 90423109 -59093928 + ID4 SINE ID 12 80 -3 4 1274 518 234 0 39 chr6 90428205 90428334 -59088703 + B3 SINE B2 7 130 -86 4 1274 459 113 0 0 chr6 90428348 90428419 -59088618 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1274 546 279 50 0 chr6 90429160 90429300 -59087737 - RSINE1 SINE B4 -16 149 3 4 1274 886 179 99 10 chr6 90429750 90429942 -59087095 - B3 SINE B2 -6 210 2 4 1274 911 244 0 19 chr6 90431780 90431829 -59085208 - B3 SINE B2 -4 212 167 4 1274 207 0 0 0 chr6 90431829 90431852 -59085185 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1274 911 244 0 19 chr6 90431852 90432015 -59085022 - B3 SINE B2 -50 166 5 4 1274 203 0 37 0 chr6 90433084 90433111 -59083926 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 4 1274 367 292 25 0 chr6 90433561 90433681 -59083356 - RSINE1 SINE B4 -1 164 42 4 1274 436 224 0 0 chr6 90433683 90433768 -59083269 - PB1D9 SINE Alu -35 85 1 4 1274 256 264 41 122 chr6 90433768 90433833 -59083204 - MT2B2 LTR ERVL -429 155 103 4 1274 722 226 59 12 chr6 90433908 90434078 -59082959 - B3 SINE B2 -38 178 1 4 1274 267 273 124 31 chr6 90434078 90434272 -59082765 + L1MD LINE L1 2867 3078 -3068 4 1274 361 83 50 0 chr6 90434374 90434434 -59082603 - MLT1B LTR MaLR -192 198 136 4 1274 261 0 0 0 chr6 90436741 90436770 -59080267 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1274 541 263 31 59 chr6 90436831 90437027 -59080010 - B3A SINE B2 -15 201 3 4 1274 311 264 69 20 chr6 90437183 90437342 -59079695 - L1MA4 LINE L1 -332 5968 5806 4 1274 505 257 151 14 chr6 90437365 90437643 -59079394 - ORR1E LTR MaLR -29 350 13 4 1274 1045 170 266 27 chr6 90437643 90437981 -59079056 + MTD LTR MaLR 1 419 0 4 1274 812 288 33 25 chr6 90437998 90438395 -59078642 - L1MA4 LINE L1 -491 5809 5347 4 1274 357 256 26 0 chr6 90438440 90438518 -59078519 - PB1D10 SINE Alu -14 103 24 4 1274 983 301 39 0 chr6 90438531 90438939 -59078098 - L1MA4 LINE L1 -816 5327 4904 4 1274 332 94 19 0 chr6 90438946 90438999 -59078038 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 4 1274 180 0 0 0 chr6 90438997 90439017 -59078020 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 4 1274 614 119 19 19 chr6 90439020 90439123 -59077914 - B1_Mur3 SINE Alu -5 144 42 4 1274 346 170 0 0 chr6 90439218 90439271 -59077766 - B1_Mur4 SINE Alu -95 55 3 4 1274 271 243 296 0 chr6 90439272 90439424 -59077613 - L1M4 LINE L1 -2442 3704 3508 4 1274 263 362 12 6 chr6 90439425 90439586 -59077451 + L1M2 LINE L1 3318 3479 -2664 4 1275 253 307 145 52 chr6 90439716 90440005 -59077032 - ORR1E LTR MaLR -43 316 1 4 1275 324 0 0 0 chr6 90440554 90440590 -59076447 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1275 960 219 110 14 chr6 90440881 90441172 -59075865 - MER31A LTR ERV1 -166 319 1 4 1275 324 108 40 26 chr6 90441542 90441618 -59075419 + (TATG)n Simple_repeat Simple_repeat 2 78 0 4 1275 1038 79 0 0 chr6 90441633 90441773 -59075264 + B2_Mm2 SINE B2 1 140 -55 4 1275 370 305 0 14 chr6 90441785 90441928 -59075109 + (TATATG)n Simple_repeat Simple_repeat 1 141 0 4 1275 363 327 153 8 chr6 90442246 90442625 -59074412 + L1MC4a LINE L1 7088 7521 -361 4 1275 410 182 18 100 chr6 90443111 90443221 -59073816 + MTC LTR MaLR 1 101 -320 4 1275 513 0 0 0 chr6 90443228 90443285 -59073752 + (TTC)n Simple_repeat Simple_repeat 1 57 0 5 1275 942 219 50 4 chr6 90443285 90443524 -59073513 - RMER1C Other Other -9 1333 1084 5 1275 700 229 16 57 chr6 90443525 90443719 -59073318 + RMER1C Other Other 882 1067 -275 5 1275 1706 115 24 130 chr6 90443723 90443827 -59073210 + MTC LTR MaLR 105 210 -211 5 1275 1848 64 30 0 chr6 90443827 90444062 -59072975 + L1_Mus1 LINE L1 6326 6567 0 5 1275 1706 115 24 130 chr6 90444062 90444288 -59072749 + MTC LTR MaLR 211 400 -21 5 1275 204 302 16 0 chr6 90444405 90444468 -59072569 + L2 LINE L2 2616 2679 -740 5 1275 797 158 28 22 chr6 90445002 90445176 -59071861 + URR1B DNA MER1_type 1 225 0 5 1275 478 322 53 8 chr6 90446336 90446545 -59070492 + ORR1E LTR MaLR 11 229 -155 5 1275 902 172 0 11 chr6 90447179 90447361 -59069676 + CT-rich Low_complexity Low_complexity 1 180 0 5 1275 200 167 0 0 chr6 90447361 90447391 -59069646 + polypyrimidine Low_complexity Low_complexity 1 30 0 5 1275 961 241 39 0 chr6 90447443 90447646 -59069391 + B3 SINE B2 1 211 -5 5 1275 513 300 67 0 chr6 90447789 90447939 -59069098 + RSINE1 SINE B4 4 163 -2 5 1275 238 356 55 12 chr6 90449018 90449183 -59067854 + MER46C DNA MER2_type 79 250 -88 5 1275 265 302 97 103 chr6 90449739 90449894 -59067143 - MER44D DNA MER2_type -174 531 378 5 1275 400 329 147 54 chr6 90449998 90450351 -59066686 - MLT2B3 LTR ERVL -3 551 166 5 1275 679 352 30 13 chr6 90450464 90450700 -59066337 - MER44D DNA MER2_type -453 252 13 5 1275 467 151 0 11 chr6 90450750 90450844 -59066193 + (TG)n Simple_repeat Simple_repeat 1 93 0 5 1275 224 244 11 0 chr6 90451910 90452000 -59065037 + GA-rich Low_complexity Low_complexity 3 93 0 5 1275 407 297 82 46 chr6 90452190 90452409 -59064628 - RMER15 LTR ERVL -13 562 336 5 1275 205 272 10 80 chr6 90452624 90452724 -59064313 + L3 LINE CR1 4218 4310 -179 5 1275 1055 96 99 73 chr6 90453253 90453444 -59063593 - URR1A DNA MER1_type -30 196 1 5 1275 180 353 92 35 chr6 90453515 90453656 -59063381 - MIR SINE MIR -101 161 13 5 1275 189 0 0 0 chr6 90454233 90454254 -59062783 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 5 1275 1270 27 7 0 chr6 90454455 90454601 -59062436 - B1_Mus1 SINE Alu -1 147 1 5 1275 384 259 111 0 chr6 90454632 90454740 -59062297 - PB1D7 SINE Alu 0 120 1 5 1275 815 301 25 22 chr6 90454793 90455068 -59061969 - B4A SINE B4 -12 280 5 5 1275 258 306 133 68 chr6 90455194 90455457 -59061580 - ORR1E LTR MaLR -59 300 21 5 1275 186 294 0 56 chr6 90455463 90455535 -59061502 + L2b LINE L2 3250 3317 -58 5 1275 863 169 175 0 chr6 90455601 90455778 -59061259 - B3 SINE B2 -7 209 2 5 1275 594 208 47 16 chr6 90457458 90457585 -59059452 - B1_Mur1 SINE Alu -1 148 18 5 1275 276 149 0 0 chr6 90459384 90459431 -59057606 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 5 1275 216 296 27 40 chr6 90459608 90459682 -59057355 - ID4_ SINE ID -10 73 1 5 1275 348 307 0 0 chr6 90460574 90460649 -59056388 + MER2 DNA MER2_type 1 75 -270 5 1275 440 262 0 108 chr6 90460900 90461020 -59056017 - RSINE1 SINE B4 -56 109 3 5 1275 6336 85 35 7 chr6 90461481 90462345 -59054692 + Lx LINE L1 5750 6637 -17 5 1275 206 267 0 32 chr6 90462702 90462764 -59054273 + MIRc SINE MIR 113 172 -96 5 1275 234 325 86 17 chr6 90463146 90463262 -59053775 - MLT1D LTR MaLR -18 487 364 5 1275 353 289 103 65 chr6 90463273 90463536 -59053501 - MLT1D LTR MaLR -205 300 28 5 1275 1144 207 14 18 chr6 90463891 90464108 -59052929 - B3 SINE B2 0 216 1 5 1275 248 0 31 0 chr6 90464816 90464848 -59052189 + (GGAGA)n Simple_repeat Simple_repeat 2 34 0 5 1275 210 143 0 0 chr6 90465588 90465623 -59051414 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1275 581 183 34 34 chr6 90465623 90465742 -59051295 - B3 SINE B2 0 216 98 5 1275 180 0 0 0 chr6 90466306 90466326 -59050711 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1275 1211 87 44 55 chr6 90466367 90466550 -59050487 + B2_Mm2 SINE B2 2 182 -13 5 1275 285 202 109 70 chr6 90466585 90466670 -59050367 + B2_Mm2 SINE B2 60 147 -48 5 1275 1175 88 0 0 chr6 90466670 90466817 -59050220 - B1_Mus2 SINE Alu 0 147 1 5 1275 285 202 109 70 chr6 90466817 90466859 -59050178 + B2_Mm2 SINE B2 148 192 -3 5 1275 1160 106 6 0 chr6 90466893 90467072 -59049965 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1275 306 67 0 0 chr6 90467072 90467117 -59049920 + (CAG)n Simple_repeat Simple_repeat 3 47 0 5 1275 606 130 0 115 chr6 90467167 90467289 -59049748 - B1_Mur1 SINE Alu 0 149 42 5 1275 394 0 0 162 chr6 90467292 90467502 -59049535 + (CTCTG)n Simple_repeat Simple_repeat 5 180 0 5 1275 606 130 0 115 chr6 90468555 90468677 -59048360 - B1_Mur1 SINE Alu 0 149 42 5 1275 645 164 0 0 chr6 90468677 90468793 -59048244 + (TCTCTG)n Simple_repeat Simple_repeat 1 116 0 5 1275 428 313 114 15 chr6 90469022 90469223 -59047814 + MLT1H LTR MaLR 64 284 -265 5 1275 239 120 100 0 chr6 90469329 90469379 -59047658 + MTE2a LTR MaLR 312 366 -13 5 1275 1449 212 51 99 chr6 90469519 90470009 -59047028 - RLTR31_Mur LTR ERVK -125 459 9 5 1275 269 208 0 54 chr6 90470174 90470230 -59046807 - ID_B1 SINE B4 0 224 172 5 1275 570 163 30 0 chr6 90470180 90470290 -59046747 - PB1D9 SINE Alu -6 114 3 5 1275 345 319 85 42 chr6 90470337 90470714 -59046323 - L1M4 LINE L1 -1948 4198 3806 5 1275 679 244 17 28 chr6 90470831 90471012 -59046025 - B3A SINE B2 -16 182 4 5 1275 473 0 18 0 chr6 90471344 90471401 -59045636 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1275 471 217 47 0 chr6 90471856 90471962 -59045075 + ORR1D2 LTR MaLR 1 111 -259 5 1275 1340 241 42 56 chr6 90471963 90472415 -59044622 + MT2A LTR ERVL 1 601 0 5 1275 1179 238 36 8 chr6 90472419 90472669 -59044368 + ORR1D2 LTR MaLR 114 370 0 5 1275 1097 186 9 54 chr6 90473840 90474062 -59042975 - B3 SINE B2 -4 212 1 5 1275 1245 108 43 5 chr6 90474990 90475177 -59041860 - B2_Mm2 SINE B2 0 195 2 5 1275 276 294 28 47 chr6 90475283 90475390 -59041647 - LTR48 LTR ERV1 -676 111 7 5 1275 234 273 121 0 chr6 90475793 90475859 -59041178 + PB1D10 SINE Alu 24 97 -20 5 1275 234 0 0 0 chr6 90475867 90475893 -59041144 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1275 724 230 78 6 chr6 90476003 90476169 -59040868 - B3A SINE B2 -19 179 2 5 1275 1172 203 14 0 chr6 90476501 90476713 -59040324 + B3 SINE B2 2 216 0 5 1275 1194 147 101 14 chr6 90476762 90476969 -59040068 + URR1B DNA MER1_type 1 225 0 5 1275 272 143 0 18 chr6 90477022 90477079 -59039958 + CT-rich Low_complexity Low_complexity 3 58 0 5 1275 567 233 7 46 chr6 90477660 90477813 -59039224 + B1F1 SINE Alu 3 149 0 5 1275 21 0 0 0 chr6 90477958 90477979 -59039058 + AT_rich Low_complexity Low_complexity 1 21 0 5 1275 280 268 150 14 chr6 90478038 90478178 -59038859 - RSINE1 SINE B4 -3 162 4 5 1275 946 210 54 15 chr6 90478269 90478472 -59038565 - B3 SINE B2 -5 211 1 5 1275 539 221 15 7 chr6 90478864 90479001 -59038036 - L1M4 LINE L1 -506 5668 5531 5 1275 266 244 12 0 chr6 90479313 90479395 -59037642 + (TA)n Simple_repeat Simple_repeat 1 83 0 5 1275 1280 279 65 47 chr6 90479395 90479434 -59037603 + RCHARR1 DNA MER1_type 425 466 -508 5 1275 1042 194 35 15 chr6 90479434 90479633 -59037404 - B3 SINE B2 -13 203 1 5 1275 1280 279 65 47 chr6 90479633 90480127 -59036910 + RCHARR1 DNA MER1_type 467 967 -7 5 1275 1179 106 31 31 chr6 90480337 90480370 -59036667 - B2_Mm2 SINE B2 -1 194 159 5 1275 225 0 0 0 chr6 90480370 90480395 -59036642 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 5 1275 1179 106 31 31 chr6 90480395 90480555 -59036482 - B2_Mm2 SINE B2 -37 158 2 5 1275 488 218 18 35 chr6 90480607 90480721 -59036316 - PB1D10 SINE Alu -1 116 5 5 1275 360 348 119 78 chr6 90481208 90481629 -59035408 + MLT1C LTR MaLR 22 459 -8 5 1275 261 307 104 82 chr6 90481754 90481864 -59035173 + L1MCa LINE L1 267 380 -5665 5 1275 329 269 65 0 chr6 90481864 90481972 -59035065 + PB1D10 SINE Alu 2 116 -1 5 1275 261 307 104 82 chr6 90481972 90482141 -59034896 + L1MCa LINE L1 381 552 -5493 5 1275 708 276 0 18 chr6 90482315 90482481 -59034556 + RSINE1 SINE B4 2 164 -1 5 1275 1241 61 0 0 chr6 90482556 90482704 -59034333 + B1_Mus1 SINE Alu 1 148 0 5 1275 195 42 0 0 chr6 90482704 90482728 -59034309 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1275 774 144 8 0 chr6 90482736 90482854 -59034183 + B1_Mur2 SINE Alu 1 119 -30 5 1275 361 273 93 43 chr6 90482741 90482902 -59034135 + B4A SINE B4 91 259 -33 5 1275 1974 130 34 94 chr6 90482921 90483234 -59033803 + ORR1B2 LTR MaLR 2 321 -46 5 1275 1262 48 0 0 chr6 90483234 90483381 -59033656 + B1_Mm SINE Alu 1 147 0 5 1275 1974 130 34 94 chr6 90483381 90483448 -59033589 + ORR1B2 LTR MaLR 322 359 -8 5 1275 260 294 45 0 chr6 90483463 90483597 -59033440 + L1MCa LINE L1 844 1081 -5670 5 1275 527 267 71 76 chr6 90484009 90484220 -59032817 + B3 SINE B2 1 210 -6 5 1275 304 266 106 19 chr6 90484239 90484400 -59032637 + L1MCa LINE L1 1788 1962 -4789 5 1275 354 256 0 0 chr6 90484406 90484484 -59032553 + B3A SINE B2 2 79 -119 5 1275 567 112 0 0 chr6 90484489 90484596 -59032441 + (CAGA)n Simple_repeat Simple_repeat 2 108 0 5 1275 513 32 0 0 chr6 90485441 90485504 -59031533 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1275 1081 229 5 14 chr6 90486110 90486323 -59030714 - B3 SINE B2 -4 212 2 5 1275 1084 182 309 10 chr6 90486357 90486467 -59030570 + ORR1D1 LTR MaLR 1 180 -194 5 1275 243 0 0 0 chr6 90486467 90486494 -59030543 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 5 1275 1084 182 309 10 chr6 90486494 90486671 -59030366 + ORR1D1 LTR MaLR 181 373 -1 5 1275 265 322 105 48 chr6 90486804 90487032 -59030005 + MLT1I LTR MaLR 149 389 -22 5 1275 270 193 89 22 chr6 90487446 90487536 -59029501 - PB1D10 SINE Alu -13 107 12 5 1275 346 177 8 42 chr6 90487879 90487997 -59029040 + CT-rich Low_complexity Low_complexity 2 115 0 5 1275 355 289 76 65 chr6 90488703 90488888 -59028149 + MLT1H1 LTR MaLR 67 253 -302 6 1275 21 0 0 0 chr6 90489922 90489943 -59027094 + GC_rich Low_complexity Low_complexity 1 21 0 6 1275 240 229 200 0 chr6 90492738 90492808 -59024229 - RSINE1 SINE B4 0 165 82 6 1275 315 0 0 0 chr6 90492910 90492945 -59024092 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1275 297 0 0 0 chr6 90492945 90492977 -59024060 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1275 311 312 17 28 chr6 90493055 90493111 -59023926 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 6 1275 261 0 0 0 chr6 90493111 90493140 -59023897 + (TCC)n Simple_repeat Simple_repeat 2 30 0 6 1275 311 312 17 28 chr6 90493140 90493261 -59023776 + (TCCA)n Simple_repeat Simple_repeat 4 124 0 6 1275 1072 186 79 19 chr6 90493323 90493654 -59023383 + MTD LTR MaLR 9 416 -3 6 1275 275 373 85 56 chr6 90494148 90494523 -59022514 + LTR33A LTR ERVL 1 386 -134 6 1275 303 223 9 52 chr6 90495560 90495992 -59021045 + CT-rich Low_complexity Low_complexity 1 413 0 6 1275 433 216 80 18 chr6 90497047 90497160 -59019877 + PB1D7 SINE Alu 1 120 0 6 1275 387 306 32 24 chr6 90497830 90497954 -59019083 - MLT1F1 LTR MaLR -419 150 26 6 1275 272 230 90 0 chr6 90498044 90498126 -59018911 + B1F2 SINE Alu 23 116 -1 6 1275 302 341 114 24 chr6 90498394 90498599 -59018438 - MLT1F1-int LTR MaLR -443 1046 823 6 1275 1371 258 40 60 chr6 90498599 90498979 -59018058 + MTEa LTR MaLR 1 372 -7 6 1275 310 328 80 28 chr6 90499432 90499608 -59017429 - L2c LINE L2 -19 3368 3184 6 1275 425 211 257 0 chr6 90501089 90501198 -59015839 - B1_Mus2 SINE Alu -10 137 1 1 1275 328 292 26 0 chr6 90502070 90502185 -59014852 + B1F1 SINE Alu 1 115 -2 2 1275 310 182 39 13 chr6 90502226 90502382 -59014655 + (CA)n Simple_repeat Simple_repeat 1 160 0 3 1275 518 138 51 13 chr6 90502401 90502660 -59014377 + (CA)n Simple_repeat Simple_repeat 1 268 0 3 1275 414 0 0 0 chr6 90502660 90502706 -59014331 + (CATAC)n Simple_repeat Simple_repeat 1 46 0 4 1275 331 152 46 28 chr6 90502706 90502731 -59014306 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1275 365 302 77 49 chr6 90502911 90503158 -59013879 - L1M5 LINE L1 -558 5566 5313 6 1275 438 20 0 0 chr6 90503214 90503265 -59013772 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 1275 789 250 64 10 chr6 90503285 90503509 -59013528 - ID_B1 SINE B4 -46 246 6 8 1275 232 260 227 8 chr6 90503787 90503919 -59013118 - L1MC1 LINE L1 -220 6113 5953 9 1275 363 284 102 0 chr6 90503965 90504092 -59012945 - L1MC1 LINE L1 -570 5774 5635 9 1275 2242 131 36 10 chr6 90504105 90504497 -59012540 - MTC LTR MaLR -19 402 1 1 1275 683 248 0 7 chr6 90504556 90504706 -59012331 + B3A SINE B2 1 149 -49 1 1275 7251 79 14 21 chr6 90504722 90505760 -59011277 - Lx LINE L1 0 6654 5625 1 1275 533 322 115 51 chr6 90505769 90505894 -59011143 - L1MC1 LINE L1 -826 5320 5202 9 1275 1105 83 14 0 chr6 90505894 90506038 -59010999 - B1_Mus2 SINE Alu 0 147 2 1 1275 533 322 115 51 chr6 90506038 90506243 -59010794 - L1MC1 LINE L1 -945 5201 4969 9 1275 326 332 130 34 chr6 90510187 90510542 -59006495 - MLT1K LTR MaLR -31 564 176 1 1275 2320 178 35 40 chr6 90510542 90511021 -59006016 - RLTR18B LTR ERVK -2 510 34 1 1275 833 175 7 0 chr6 90511009 90511152 -59005885 - B1_Mur4 SINE Alu 0 150 7 1 1275 421 120 27 0 chr6 90511153 90511228 -59005809 - RLTR18B LTR ERVK -435 77 1 1 1275 22 0 0 0 chr6 90511714 90511736 -59005301 + AT_rich Low_complexity Low_complexity 1 22 0 1 1275 324 0 0 0 chr6 90511813 90511849 -59005188 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1275 947 209 101 15 chr6 90511987 90512186 -59004851 - B3 SINE B2 0 216 1 1 1275 405 331 11 37 chr6 90514761 90514949 -59002088 - MIR SINE MIR -70 192 10 2 1275 369 0 0 0 chr6 90516279 90516320 -59000717 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1275 226 206 0 27 chr6 90516320 90516395 -59000642 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1275 281 238 0 12 chr6 90518700 90518781 -58998256 + GA-rich Low_complexity Low_complexity 1 80 0 2 1275 261 0 0 0 chr6 90522371 90522400 -58994637 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1275 236 170 43 43 chr6 90522455 90522547 -58994490 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1275 475 78 28 55 chr6 90522590 90522699 -58994338 + (TG)n Simple_repeat Simple_repeat 2 107 0 2 1275 270 146 50 55 chr6 90522769 90522950 -58994087 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1275 621 223 18 54 chr6 90522962 90522998 -58994039 - RSINE1 SINE B4 0 165 137 2 1275 188 0 74 0 chr6 90522998 90523025 -58994012 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2 1275 621 223 18 54 chr6 90523025 90523154 -58993883 - RSINE1 SINE B4 -29 136 6 2 1275 415 336 73 0 chr6 90523341 90523478 -58993559 - RMER5 LTR ERV1 0 534 388 2 1275 443 314 64 12 chr6 90523500 90523676 -58993361 - B4 SINE B4 0 292 78 2 1275 300 263 69 20 chr6 90524184 90524285 -58992752 - B4A SINE B4 -181 111 6 2 1275 841 190 35 39 chr6 90524362 90524565 -58992472 + B3 SINE B2 15 216 0 3 1275 1033 287 36 27 chr6 90524561 90524898 -58992139 - RMER5 LTR ERV1 -155 379 40 2 1275 284 307 236 41 chr6 90528090 90528341 -58988696 - MLT2B3 LTR ERVL -3 551 132 3 1275 337 276 0 9 chr6 90528341 90528447 -58988590 - MTEb LTR MaLR -177 202 98 3 1275 440 81 14 0 chr6 90528778 90528852 -58988185 + (GGGA)n Simple_repeat Simple_repeat 1 75 0 3 1275 1034 121 0 6 chr6 90528853 90529020 -58988017 + (GAAA)n Simple_repeat Simple_repeat 1 166 0 3 1275 1281 153 75 14 chr6 90530949 90531161 -58985876 + URR1A DNA MER1_type 2 226 0 3 1275 277 275 77 6 chr6 90531666 90531766 -58985271 + B3A SINE B2 2 109 -89 3 1275 930 110 0 0 chr6 90531770 90531925 -58985112 + (CA)n Simple_repeat Simple_repeat 1 155 0 3 1275 517 278 75 0 chr6 90531986 90532173 -58984864 - ID_B1 SINE B4 -2 222 22 3 1275 44 0 0 0 chr6 90532252 90532296 -58984741 + AT_rich Low_complexity Low_complexity 1 44 0 3 1275 214 246 35 0 chr6 90532352 90532409 -58984628 - MIR SINE MIR -56 206 148 4 1275 746 268 51 15 chr6 90533424 90533621 -58983416 - B3 SINE B2 -4 212 9 4 1275 226 230 92 0 chr6 90533622 90533709 -58983328 - L1M4b LINE L1 -4059 3043 2949 4 1275 503 294 14 11 chr6 90533729 90533878 -58983159 - PB1 SINE Alu -3 146 1 4 1275 211 342 0 50 chr6 90533807 90533887 -58983150 - B4A SINE B4 -136 156 81 4 1275 269 235 59 0 chr6 90533916 90533984 -58983053 + (TATG)n Simple_repeat Simple_repeat 4 75 0 4 1275 331 169 0 30 chr6 90534034 90534101 -58982936 - B1F1 SINE Alu 0 149 85 4 1275 329 279 230 35 chr6 90534127 90534583 -58982454 - L1M4b LINE L1 -4211 3123 2579 4 1275 225 0 0 0 chr6 90534627 90534652 -58982385 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1275 321 276 187 18 chr6 90534688 90534854 -58982183 - L1M4b LINE L1 -4572 2530 2337 4 1275 302 326 138 45 chr6 90534943 90535089 -58981948 - L1M4b LINE L1 -4800 2302 2136 4 1275 1215 48 0 20 chr6 90535089 90535238 -58981799 - B1_Mm SINE Alu 0 147 2 4 1275 302 326 138 45 chr6 90535238 90535447 -58981590 - L1M4b LINE L1 -4967 2135 1914 4 1275 547 297 137 92 chr6 90535624 90535977 -58981060 - L1M4b LINE L1 -5953 1381 1017 4 1275 924 223 80 0 chr6 90535977 90536165 -58980872 - B3 SINE B2 -13 203 1 4 1275 547 297 137 92 chr6 90536165 90536240 -58980797 - L1M4b LINE L1 -6318 1016 977 4 1275 658 284 31 16 chr6 90536240 90536433 -58980604 - B3A SINE B2 0 198 3 5 1275 547 297 137 92 chr6 90536433 90536677 -58980360 - L1M4b LINE L1 -6358 976 678 4 1275 453 302 8 0 chr6 90536806 90536925 -58980112 - RSINE1 SINE B4 -43 122 3 5 1275 397 186 71 20 chr6 90537172 90537224 -58979813 + PB1 SINE Alu 11 64 -63 5 1275 2939 127 95 118 chr6 90537224 90537823 -58979214 - RMER4B LTR ERVK 0 585 1 5 1275 397 186 71 20 chr6 90537823 90537869 -58979168 + PB1 SINE Alu 65 114 -13 5 1275 272 273 22 50 chr6 90537917 90538056 -58978981 - L1M2 LINE L1 -795 5348 5214 5 1275 271 332 110 50 chr6 90538111 90538511 -58978526 - L2 LINE L2 -857 2562 2139 5 1275 974 300 97 0 chr6 90538839 90539189 -58977848 - MLT1B LTR MaLR -6 384 1 5 1275 363 320 85 11 chr6 90539631 90539790 -58977247 + Charlie5 DNA MER1_type 2354 2525 -99 5 1275 281 248 179 27 chr6 90539790 90539902 -58977135 + MER2 DNA MER2_type 1 129 -216 5 1275 236 295 26 0 chr6 90542587 90542665 -58974372 - ID2 SINE ID 0 83 4 5 1275 291 259 150 40 chr6 90543194 90543367 -58973670 - ORR1E LTR MaLR -106 253 62 6 1275 877 221 63 5 chr6 90543840 90544031 -58973006 - B3 SINE B2 -13 203 2 6 1275 458 292 20 33 chr6 90544972 90545124 -58971913 - RMER15 LTR ERVL 0 575 426 6 1275 212 250 0 20 chr6 90545188 90545237 -58971800 + C-rich Low_complexity Low_complexity 5 52 0 6 1275 1822 190 44 14 chr6 90545481 90545844 -58971193 - ORR1D1 LTR MaLR 0 374 1 6 1275 223 36 51 51 chr6 90547992 90548051 -58968986 + (TTTTG)n Simple_repeat Simple_repeat 3 61 0 6 1275 23 0 0 0 chr6 90550172 90550195 -58966842 + AT_rich Low_complexity Low_complexity 1 23 0 6 1275 674 288 26 16 chr6 90550195 90550389 -58966648 - B3A SINE B2 -1 197 2 6 1275 333 0 0 0 chr6 90550398 90550435 -58966602 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1275 549 0 0 0 chr6 90551105 90551166 -58965871 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1275 284 197 30 0 chr6 90551624 90551690 -58965347 - MamRep4096 DNA hAT? -291 135 68 7 1275 200 196 0 0 chr6 90552886 90552932 -58964105 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1275 217 273 32 74 chr6 90553134 90553229 -58963808 + MIR SINE MIR 53 143 -119 7 1275 220 186 0 0 chr6 90554583 90554626 -58962411 + C-rich Low_complexity Low_complexity 4 46 0 7 1275 999 280 116 38 chr6 90555589 90556038 -58960999 - MER44B DNA MER2_type -1 549 66 7 1275 241 237 34 0 chr6 90556124 90556183 -58960854 - MIR SINE MIR -167 95 35 7 1275 519 69 0 0 chr6 90556883 90556955 -58960082 + (TCTG)n Simple_repeat Simple_repeat 3 74 0 7 1275 807 156 14 22 chr6 90556955 90557093 -58959944 - RSINE1 SINE B4 -26 139 3 7 1275 376 302 77 8 chr6 90557599 90557729 -58959308 + MER2 DNA MER2_type 7 145 -200 7 1275 387 0 0 0 chr6 90557941 90557984 -58959053 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1275 267 291 9 36 chr6 90558247 90558365 -58958672 - AluG_3 SINE Alu -93 218 7 8 1275 405 0 0 0 chr6 90558472 90558517 -58958520 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1275 942 206 32 16 chr6 90558665 90558852 -58958185 + ID_B1 SINE B4 11 200 -24 8 1275 297 155 17 0 chr6 90560159 90560217 -58956820 - MTEa LTR MaLR -1 378 320 8 1275 283 243 14 0 chr6 90560496 90560566 -58956471 - L1M4 LINE L1 -6396 146 76 8 1275 216 0 0 0 chr6 90560574 90560598 -58956439 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 8 1275 1061 95 0 45 chr6 90560687 90560842 -58956195 - B1_Mus1 SINE Alu 0 148 1 8 1275 3122 111 46 137 chr6 90561027 90561759 -58955278 - RMER6A LTR ERVK -7 749 84 8 1275 544 277 107 10 chr6 90562373 90562646 -58954391 - MLT1B LTR MaLR -51 339 1 8 1275 589 272 52 16 chr6 90562927 90563131 -58953906 + B4A SINE B4 83 288 -4 8 1275 288 77 0 0 chr6 90563134 90563173 -58953864 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1275 256 338 90 95 chr6 90563665 90564054 -58952983 + MLT1A1 LTR MaLR 1 387 -21 9 1275 405 283 21 154 chr6 90564094 90564129 -58952908 + B4 SINE B4 63 224 -67 9 1275 836 170 7 33 chr6 90564129 90564281 -58952756 + B1_Mur4 SINE Alu 2 149 -1 9 1275 417 181 24 12 chr6 90564294 90564378 -58952659 + B4A SINE B4 123 207 -85 9 1275 357 314 70 21 chr6 90564685 90564828 -58952209 - LTR53 LTR ERVL -22 497 348 9 1275 267 346 96 0 chr6 90564882 90565018 -58952019 - LTR53 LTR ERVL -262 257 109 9 1275 192 77 0 0 chr6 90565376 90565402 -58951635 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 9 1275 209 167 19 0 chr6 90566446 90566500 -58950537 + CT-rich Low_complexity Low_complexity 3 57 0 9 1275 198 301 125 31 chr6 90566990 90567086 -58949951 + MIRm SINE MIR 88 192 -84 9 1275 526 278 115 83 chr6 90570291 90570605 -58946432 - MLT1B LTR MaLR -44 346 23 9 1276 467 303 173 53 chr6 90572061 90572402 -58944635 - MLT1B LTR MaLR 0 390 9 1 1276 273 219 14 14 chr6 90572479 90572553 -58944484 + ID4 SINE ID 2 75 -8 1 1276 1256 54 0 0 chr6 90573815 90573963 -58943074 + B1_Mus1 SINE Alu 1 148 0 1 1276 442 164 8 111 chr6 90574518 90574635 -58942402 + MT2B LTR ERVL 153 257 -344 1 1276 824 146 0 14 chr6 90574540 90574679 -58942358 + B1_Mur4 SINE Alu 12 148 -2 1 1276 751 255 19 8 chr6 90575695 90575884 -58941153 + B3 SINE B2 34 215 -1 1 1276 678 276 24 12 chr6 90575944 90576113 -58940924 + B3A SINE B2 3 173 -25 1 1276 486 0 0 0 chr6 90576114 90576168 -58940869 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1276 393 22 0 0 chr6 90576168 90576213 -58940824 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 1276 1654 194 82 7 chr6 90577422 90577818 -58939219 - MTD LTR MaLR 0 421 17 1 1276 345 154 206 8 chr6 90577818 90577910 -58939127 - ORR1C2 LTR MaLR 0 394 290 1 1276 1577 112 61 14 chr6 90577983 90578263 -58938774 - ORR1C2 LTR MaLR -91 293 1 1 1276 235 231 11 124 chr6 90578263 90578324 -58938713 - MTD LTR MaLR -366 53 3 1 1276 273 321 43 81 chr6 90578324 90578531 -58938506 + ORR1E LTR MaLR 173 356 -23 1 1276 189 296 0 0 chr6 90578765 90578846 -58938191 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1276 373 359 0 22 chr6 90578876 90579010 -58938027 + (TG)n Simple_repeat Simple_repeat 1 131 0 1 1276 310 159 0 73 chr6 90579013 90579081 -58937956 - HAL1-3A_ME LINE L1 -828 2030 1968 1 1276 258 274 122 7 chr6 90579612 90579759 -58937278 - Lx8 LINE L1 -9 7464 7301 1 1276 727 186 205 29 chr6 90579757 90579967 -58937070 - Lx8 LINE L1 -326 7147 6901 1 1276 955 176 73 25 chr6 90579978 90580182 -58936855 - B3 SINE B2 0 216 3 1 1276 226 388 0 36 chr6 90580422 90580505 -58936532 - ID4_ SINE ID 0 83 4 1 1276 314 304 80 40 chr6 90580949 90581124 -58935913 - MTEa LTR MaLR 0 379 198 1 1276 580 237 89 0 chr6 90581586 90581721 -58935316 - B1F1 SINE Alu -2 147 1 1 1276 225 256 62 72 chr6 90581805 90581902 -58935135 - PB1D10 SINE Alu -21 96 1 1 1276 589 250 100 20 chr6 90582432 90582614 -58934423 + B4A SINE B4 30 228 -64 1 1276 1019 163 37 26 chr6 90582614 90582803 -58934234 + B2_Mm2 SINE B2 2 192 -3 1 1276 589 250 100 20 chr6 90582803 90582820 -58934217 + B4A SINE B4 229 245 -47 1 1276 397 128 25 13 chr6 90582820 90582899 -58934138 + GA-rich Low_complexity Low_complexity 2 81 0 1 1276 706 227 63 25 chr6 90582901 90583059 -58933978 + RSINE1 SINE B4 2 165 0 1 1276 354 216 54 0 chr6 90584135 90584209 -58932828 - B1F SINE Alu -54 95 18 1 1276 255 273 0 0 chr6 90584168 90584223 -58932814 - B4A SINE B4 -149 143 89 1 1276 258 32 0 0 chr6 90585428 90585459 -58931578 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1276 369 0 0 0 chr6 90585459 90585499 -58931538 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1276 276 53 0 0 chr6 90585499 90585536 -58931501 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1276 314 316 66 78 chr6 90587020 90587277 -58929760 - MTEa LTR MaLR -34 325 72 1 1276 337 277 32 0 chr6 90587346 90587440 -58929597 - MTEa LTR MaLR -282 97 1 1 1276 713 152 32 8 chr6 90587441 90587567 -58929470 + B1_Mur1 SINE Alu 2 130 -19 1 1276 1628 286 190 14 chr6 90587596 90588312 -58928725 - MTEa-int LTR MaLR -2 1578 737 1 1276 408 305 218 16 chr6 90588358 90588661 -58928376 - MTEa-int LTR MaLR -950 630 267 1 1276 252 143 0 0 chr6 90588751 90588793 -58928244 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 1 1276 213 39 0 0 chr6 90588796 90588822 -58928215 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 1 1276 556 290 35 10 chr6 90588827 90589029 -58928008 - Lx8 LINE L1 -132 7341 7135 1 1276 808 289 87 22 chr6 90589034 90589310 -58927727 - MTEa-int LTR MaLR -1286 294 1 1 1276 2227 184 19 17 chr6 90589867 90589881 -58927156 - MTD LTR MaLR -8 411 403 1 1276 2124 92 8 87 chr6 90589881 90590238 -58926799 - ORR1A4 LTR MaLR 0 329 1 1 1276 2227 184 19 17 chr6 90590238 90590633 -58926404 - MTD LTR MaLR -17 402 1 1 1276 423 289 41 8 chr6 90591148 90591270 -58925767 - B1F SINE Alu -23 126 1 1 1276 393 280 25 17 chr6 90592389 90592509 -58924528 - PB1 SINE Alu 0 127 7 1 1276 583 263 83 99 chr6 90592743 90592996 -58924041 + B4 SINE B4 1 249 -43 1 1276 258 32 0 0 chr6 90593023 90593054 -58923983 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1276 406 248 18 10 chr6 90593110 90593211 -58923826 + PB1D10 SINE Alu 5 88 -29 1 1276 246 329 0 14 chr6 90593236 90593310 -58923727 - ID4 SINE ID -2 81 9 1 1276 269 263 13 0 chr6 90593776 90593852 -58923185 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 1 1276 324 0 0 0 chr6 90595348 90595384 -58921653 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1276 441 0 0 0 chr6 90596014 90596063 -58920974 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1276 255 354 90 12 chr6 90596536 90596702 -58920335 - LTR33 LTR ERVL -314 201 23 1 1276 981 239 234 50 chr6 90596804 90597288 -58919749 - RMER4B LTR ERVK -9 576 4 1 1276 1180 69 0 0 chr6 90597409 90597553 -58919484 - B1_Mus2 SINE Alu -3 144 1 1 1276 249 65 109 0 chr6 90597553 90597599 -58919438 - MMAR1 DNA Mariner -28 1258 1208 1 1276 1563 271 121 8 chr6 90597601 90597926 -58919111 - MMAR1 DNA Mariner -271 1015 673 1 1276 1307 134 114 0 chr6 90597926 90598128 -58918909 + URR1A DNA MER1_type 2 226 0 1 1276 1563 271 121 8 chr6 90598128 90598333 -58918704 - MMAR1 DNA Mariner -614 672 426 1 1276 1082 170 109 134 chr6 90598330 90598643 -58918394 - ORR1D1 LTR MaLR -69 305 1 1 1276 1256 41 0 0 chr6 90598685 90598832 -58918205 + B1_Mus2 SINE Alu 1 147 0 1 1276 227 280 68 8 chr6 90599978 90600111 -58916926 + L1MD3 LINE L1 7847 7987 -8 1 1276 659 234 150 12 chr6 90600112 90600272 -58916765 + B3A SINE B2 1 182 -16 1 1276 420 240 5 12 chr6 90600356 90600464 -58916573 + PB1D10 SINE Alu 3 111 -9 1 1276 366 280 142 17 chr6 90600473 90600593 -58916444 + RSINE1 SINE B4 2 136 -29 1 1276 28 0 0 0 chr6 90600628 90600656 -58916381 + AT_rich Low_complexity Low_complexity 1 28 0 1 1276 210 369 0 0 chr6 90600656 90600721 -58916316 + ID4_ SINE ID 2 66 -17 1 1276 1111 157 55 18 chr6 90600894 90601114 -58915923 + MTD LTR MaLR 1 228 -191 1 1276 272 146 91 0 chr6 90601133 90601188 -58915849 + MTD-int LTR MaLR 1 60 -1198 1 1276 3312 231 80 78 chr6 90601191 90602272 -58914765 + MTD-int LTR MaLR 176 1258 0 1 1276 1716 205 80 18 chr6 90602272 90602659 -58914378 + MTD LTR MaLR 1 411 -8 1 1276 756 156 102 43 chr6 90602699 90602886 -58914151 - ORR1D2 LTR MaLR -1 369 172 1 1276 183 184 0 0 chr6 90604120 90604158 -58912879 + C-rich Low_complexity Low_complexity 5 42 0 1 1276 581 303 62 97 chr6 90604720 90605009 -58912028 - B4 SINE B4 -12 280 2 1 1276 552 346 82 65 chr6 90605218 90605682 -58911355 - MLT2B1 LTR ERVL -48 472 1 1 1276 827 139 19 19 chr6 90606070 90606224 -58910813 - Lx LINE L1 -1 6653 6500 1 1276 334 133 31 37 chr6 90606310 90606408 -58910629 - B2_Mm2 SINE B2 -14 181 47 1 1276 1253 103 17 6 chr6 90606459 90606635 -58910402 - B2_Mm1t SINE B2 -14 179 2 1 1276 1334 235 99 8 chr6 90606733 90607097 -58909940 - MTD LTR MaLR -14 405 9 1 1276 825 282 70 0 chr6 90607163 90607390 -58909647 - B4A SINE B4 0 292 50 1 1276 534 231 94 29 chr6 90607871 90608009 -58909028 - B1F1 SINE Alu 0 149 3 1 1276 243 0 0 0 chr6 90609865 90609892 -58907145 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1276 245 89 22 0 chr6 90611947 90611992 -58905045 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1276 21 0 0 0 chr6 90612031 90612052 -58904985 + AT_rich Low_complexity Low_complexity 1 21 0 1 1276 261 222 0 0 chr6 90612623 90612686 -58904351 + (TGG)n Simple_repeat Simple_repeat 1 63 0 1 1276 192 231 0 0 chr6 90614469 90614521 -58902516 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1276 271 252 192 0 chr6 90616804 90616903 -58900134 + MER20 DNA MER1_type 2 119 -100 1 1276 563 178 323 51 chr6 90619733 90620052 -58896985 + MTD LTR MaLR 1 405 -14 1 1276 182 189 0 70 chr6 90620771 90620828 -58896209 - MIR SINE MIR -129 133 81 1 1276 222 37 0 0 chr6 90621128 90621155 -58895882 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1276 1164 117 142 5 chr6 90622446 90622643 -58894394 - URR1A DNA MER1_type -2 224 1 1 1276 912 226 19 33 chr6 90623812 90623991 -58893046 + B3 SINE B2 5 186 -30 1 1276 198 0 0 0 chr6 90623991 90624013 -58893024 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1276 741 199 287 6 chr6 90624021 90624188 -58892849 + B3 SINE B2 1 214 -2 1 1276 912 226 19 33 chr6 90624188 90624210 -58892827 + B3 SINE B2 193 212 -4 1 1276 968 220 47 38 chr6 90624516 90624694 -58892343 + B3 SINE B2 2 181 -35 1 1276 180 0 0 0 chr6 90624694 90624714 -58892323 + (CG)n Simple_repeat Simple_repeat 2 21 0 1 1276 207 0 0 0 chr6 90624714 90624736 -58892301 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1276 968 220 47 38 chr6 90624736 90624769 -58892268 + B3 SINE B2 182 214 -2 1 1276 243 0 0 0 chr6 90624938 90624965 -58892072 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 1276 1156 68 0 7 chr6 90625561 90625708 -58891329 - B1_Mm SINE Alu 0 147 2 1 1276 252 77 0 0 chr6 90625726 90625765 -58891272 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1276 1201 68 0 0 chr6 90625765 90625912 -58891125 - B1_Mm SINE Alu 0 147 1 1 1276 310 361 95 7 chr6 90627622 90627770 -58889267 - MIR SINE MIR -101 161 1 1 1276 368 299 82 28 chr6 90630088 90630270 -58886767 + MER2 DNA MER2_type 5 196 -149 1 1276 182 174 22 0 chr6 90631127 90631173 -58885864 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1276 288 186 0 0 chr6 90631467 90631526 -58885511 + GA-rich Low_complexity Low_complexity 1 59 0 1 1276 342 0 0 0 chr6 90632417 90632455 -58884582 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1276 327 242 49 29 chr6 90634138 90634240 -58882797 + MIRc SINE MIR 30 133 -135 1 1276 230 208 57 0 chr6 90636225 90636278 -58880759 + MER3 DNA MER1_type 102 157 -52 1 1276 337 279 34 54 chr6 90636604 90636752 -58880285 + BC1_Mm scRNA scRNA 2 146 -6 1 1276 441 248 30 0 chr6 90636969 90637070 -58879967 + B1F SINE Alu 38 141 -8 1 1276 449 297 57 4 chr6 90637458 90637605 -58879432 + B4A SINE B4 123 273 -19 1 1276 902 254 151 0 chr6 90637875 90637998 -58879039 + B4A SINE B4 2 144 -148 2 1276 189 0 0 0 chr6 90637998 90638019 -58879018 + (CCCTAA)n Simple_repeat Simple_repeat 3 23 0 2 1276 902 254 151 0 chr6 90638019 90638147 -58878890 + B4A SINE B4 145 290 -2 2 1276 191 333 0 0 chr6 90642999 90643050 -58873987 + L2a LINE L2 3009 3059 -316 2 1276 290 341 71 8 chr6 90645024 90645151 -58871886 + L2a LINE L2 3290 3424 -2 2 1276 419 195 37 0 chr6 90645314 90645396 -58871641 - B3 SINE B2 -131 85 1 2 1276 471 269 142 20 chr6 90645399 90645653 -58871384 + MLT1B LTR MaLR 99 383 -7 2 1276 651 237 14 14 chr6 90647681 90647822 -58869215 + RSINE1 SINE B4 1 141 -24 2 1276 297 75 0 0 chr6 90647822 90647862 -58869175 + (CATA)n Simple_repeat Simple_repeat 3 42 0 2 1276 323 286 12 23 chr6 90648936 90649022 -58868015 + L3 LINE CR1 3775 3859 -630 2 1276 487 245 9 19 chr6 90655283 90655391 -58861646 + PB1D10 SINE Alu 1 107 -10 2 1276 234 0 0 0 chr6 90655391 90655417 -58861620 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2 1276 237 83 0 0 chr6 90656114 90656150 -58860887 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1276 223 319 29 0 chr6 90657036 90657117 -58859920 - MIRm SINE MIR -98 170 88 2 1276 733 212 0 62 chr6 90657452 90657598 -58859439 + B1_Mur2 SINE Alu 1 137 -12 2 1276 342 0 0 0 chr6 90657598 90657636 -58859401 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 2 1276 848 236 85 0 chr6 90658787 90658986 -58858051 + B3 SINE B2 1 216 0 2 1276 369 0 0 0 chr6 90659807 90659848 -58857189 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1276 333 0 0 0 chr6 90659848 90659884 -58857153 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1276 198 91 0 0 chr6 90659884 90659916 -58857121 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1276 181 310 50 10 chr6 90660109 90660210 -58856827 - MIRc SINE MIR -119 149 45 2 1276 228 243 63 74 chr6 90661003 90661130 -58855907 - MIR SINE MIR -81 187 53 2 1276 205 282 64 0 chr6 90662073 90662151 -58854886 + MIRb SINE MIR 18 100 -168 2 1276 288 0 0 0 chr6 90662211 90662243 -58854794 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1276 220 368 14 0 chr6 90662683 90662776 -58854261 - MIRm SINE MIR -110 166 69 2 1276 261 272 158 0 chr6 90663454 90663568 -58853469 - MIRb SINE MIR -80 188 53 2 1276 258 32 0 0 chr6 90663697 90663728 -58853309 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1276 769 90 32 0 chr6 90664308 90664463 -58852574 + (TG)n Simple_repeat Simple_repeat 1 160 0 2 1276 202 0 29 57 chr6 90664730 90664765 -58852272 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1276 263 49 24 0 chr6 90665730 90665771 -58851266 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1276 389 278 0 44 chr6 90667252 90667365 -58849672 + PB1D10 SINE Alu 8 115 -2 2 1276 350 251 109 43 chr6 90667379 90667580 -58849457 + L1M4 LINE L1 5207 5417 -767 2 1276 459 0 0 0 chr6 90668007 90668058 -58848979 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 1276 215 241 19 0 chr6 90669617 90669671 -58847366 - ID4_ SINE ID -27 56 2 2 1276 646 313 5 25 chr6 90669842 90669865 -58847172 - B3A SINE B2 0 198 177 2 1276 243 0 0 0 chr6 90669865 90669892 -58847145 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2 1276 646 313 5 25 chr6 90669892 90670068 -58846969 - B3A SINE B2 -22 176 3 2 1276 468 294 0 0 chr6 90670692 90670801 -58846236 + PB1 SINE Alu 19 127 0 2 1276 291 54 0 0 chr6 90671260 90671297 -58845740 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1276 382 356 54 22 chr6 90673166 90673390 -58843647 - MamRep434 DNA TcMar -131 295 65 2 1276 198 302 153 20 chr6 90674816 90674914 -58842123 - MIRb SINE MIR -115 153 43 2 1276 240 174 33 44 chr6 90675920 90676010 -58841027 + (TATAA)n Simple_repeat Simple_repeat 2 90 0 2 1276 205 88 0 29 chr6 90676093 90676128 -58840909 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 1276 216 246 42 28 chr6 90676193 90676264 -58840773 - MIRm SINE MIR -155 121 50 2 1276 360 237 82 26 chr6 90676599 90676731 -58840306 + MIRb SINE MIR 32 175 -93 2 1276 373 222 25 0 chr6 90676816 90676897 -58840140 + ID4_ SINE ID 1 83 0 2 1276 410 283 0 0 chr6 90677747 90677839 -58839198 - B1F1 SINE Alu -57 92 1 2 1276 202 297 31 62 chr6 90678332 90678429 -58838608 + L4 LINE RTE 1088 1181 -848 2 1276 246 204 0 36 chr6 90678519 90678575 -58838462 - MIR SINE MIR -192 70 17 2 1276 187 254 32 48 chr6 90679901 90679963 -58837074 - MIRm SINE MIR -167 109 49 2 1276 213 39 0 0 chr6 90680986 90681012 -58836025 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1276 444 243 61 48 chr6 90682422 90682569 -58834468 + B1F SINE Alu 1 149 0 2 1276 527 126 0 10 chr6 90682580 90682676 -58834361 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 2 1276 2599 125 74 2 chr6 90682877 90683270 -58833767 + MTC LTR MaLR 1 421 0 2 1276 212 242 31 46 chr6 90684193 90684258 -58832779 + L2a LINE L2 3352 3415 -11 2 1276 477 190 155 0 chr6 90687803 90687919 -58829118 - B1F SINE Alu -9 140 7 2 1276 507 272 72 14 chr6 90688230 90688368 -58828669 - B1_Mur1 SINE Alu -2 147 2 2 1276 304 336 72 14 chr6 90688522 90688661 -58828376 + MIRc SINE MIR 83 229 -39 2 1276 510 128 26 0 chr6 90689019 90689097 -58827940 + B3A SINE B2 1 80 -118 2 1276 424 314 61 36 chr6 90689140 90689305 -58827732 + Tigger5 DNA MER2_type 5 173 -2233 2 1276 280 366 55 27 chr6 90689813 90689959 -58827078 + RMER12 LTR ERVK 703 852 -470 2 1276 566 180 19 26 chr6 90689939 90690076 -58826961 - PB1D9 SINE Alu -21 128 1 2 1276 261 0 0 0 chr6 90690091 90690120 -58826917 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1276 671 220 220 0 chr6 90690148 90690325 -58826712 + B3 SINE B2 1 216 0 2 1276 310 246 43 0 chr6 90692360 90692429 -58824608 - ID4_ SINE ID -9 74 3 2 1276 225 290 65 0 chr6 90692525 90692587 -58824450 + ID4_ SINE ID 16 81 -2 2 1276 347 301 137 12 chr6 90692666 90692915 -58824122 + L1MB8 LINE L1 4921 5200 -946 2 1276 794 173 15 1 chr6 90692915 90693072 -58823965 + B2_Mm2 SINE B2 2 170 -46 2 1276 1133 75 0 20 chr6 90693111 90693260 -58823777 - B1_Mm SINE Alu 0 147 2 2 1276 802 210 14 0 chr6 90693308 90693446 -58823591 + B1_Mur2 SINE Alu 1 140 -9 2 1276 303 319 107 24 chr6 90693533 90693822 -58823215 + L1MB8 LINE L1 5270 5582 -596 2 1276 289 329 151 23 chr6 90693838 90694189 -58822848 + L1MB8 LINE L1 5619 6014 -164 2 1276 700 193 44 7 chr6 90694343 90694495 -58822542 + ID_B1 SINE B4 84 245 -47 2 1276 408 125 0 0 chr6 90694506 90694570 -58822467 + (GGGGA)n Simple_repeat Simple_repeat 2 65 0 2 1276 440 223 0 0 chr6 90694904 90694998 -58822039 + BC1_Mm scRNA scRNA 3 96 -56 2 1276 334 282 294 17 chr6 90695005 90695124 -58821913 + RSINE1 SINE B4 2 153 -12 2 1276 315 0 0 0 chr6 90695133 90695168 -58821869 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1276 206 209 0 0 chr6 90695463 90695506 -58821531 - L2a LINE L2 0 3426 3384 2 1276 555 16 0 0 chr6 90695519 90695583 -58821454 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1276 260 235 69 174 chr6 90696073 90696217 -58820820 + MLT1A1 LTR MaLR 268 396 -12 2 1276 209 303 67 48 chr6 90699275 90699379 -58817658 + MIRb SINE MIR 51 156 -112 2 1276 348 331 72 0 chr6 90699379 90699518 -58817519 + B1F1 SINE Alu 1 149 0 2 1276 321 295 0 0 chr6 90699525 90699603 -58817434 + ID4 SINE ID 4 81 -2 2 1276 338 218 35 11 chr6 90700005 90700115 -58816922 + BC1_Mm scRNA scRNA 11 120 -32 2 1276 1279 140 37 0 chr6 90700413 90700627 -58816410 - URR1B DNA MER1_type -3 222 1 2 1277 218 285 204 11 chr6 90702846 90702954 -58814083 + MIRb SINE MIR 35 162 -114 2 1277 259 308 0 15 chr6 90703968 90704074 -58812963 - MIR SINE MIR -86 190 83 2 1277 213 225 0 0 chr6 90704584 90704624 -58812413 + L2b LINE L2 3323 3362 -13 2 1277 271 303 0 0 chr6 90704653 90704719 -58812318 - BC1_Mm scRNA scRNA -67 85 20 2 1277 417 335 71 40 chr6 90705177 90705401 -58811636 + MLT1K LTR MaLR 355 585 -10 2 1277 278 325 101 39 chr6 90708404 90708583 -58808454 + L2b LINE L2 2952 3143 -283 2 1277 524 295 95 5 chr6 90708629 90708968 -58808069 - L1MB5 LINE L1 -36 6142 5758 2 1277 184 356 0 64 chr6 90709120 90709198 -58807839 + L2b LINE L2 3287 3359 -16 2 1277 1800 210 44 12 chr6 90710320 90710725 -58806312 - MTD LTR MaLR -1 418 1 2 1277 215 281 62 15 chr6 90711930 90711995 -58805042 - MIRm SINE MIR -95 181 114 2 1277 187 231 77 0 chr6 90712394 90712446 -58804591 + L4 LINE RTE 1763 1818 -211 2 1277 186 133 0 0 chr6 90712674 90712704 -58804333 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 1277 270 0 0 0 chr6 90713940 90713970 -58803067 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1277 180 0 0 0 chr6 90715321 90715341 -58801696 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1277 195 227 98 85 chr6 90715397 90715479 -58801558 - L3 LINE CR1 -83 4406 4324 2 1277 1131 37 37 0 chr6 90715483 90715619 -58801418 + B1_Mus2 SINE Alu 2 142 -5 2 1277 243 0 0 0 chr6 90715623 90715650 -58801387 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1277 248 174 70 0 chr6 90716023 90716138 -58800899 + (TCCA)n Simple_repeat Simple_repeat 1 123 0 2 1277 296 206 50 0 chr6 90716201 90716342 -58800695 + (TCCA)n Simple_repeat Simple_repeat 3 150 0 2 1277 501 17 0 0 chr6 90717446 90717504 -58799533 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1277 264 273 0 0 chr6 90718590 90718645 -58798392 - MIR SINE MIR -61 147 93 2 1277 264 242 6 27 chr6 90719026 90719118 -58797919 - MIR3 SINE MIR -50 158 70 2 1277 333 102 0 0 chr6 90719833 90719892 -58797145 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 2 1277 552 30 0 0 chr6 90719996 90720062 -58796975 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1277 401 296 19 0 chr6 90720235 90720343 -58796694 + B1F SINE Alu 6 115 -34 3 1277 192 200 0 0 chr6 90720366 90720416 -58796621 + GA-rich Low_complexity Low_complexity 1 50 0 3 1277 384 259 127 20 chr6 90720688 90720838 -58796199 - MER113 DNA MER1_type -118 403 238 3 1277 189 74 0 0 chr6 90721543 90721570 -58795467 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1277 237 245 0 0 chr6 90723012 90723065 -58793972 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 3 1277 282 138 0 0 chr6 90723066 90723124 -58793913 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 3 1277 408 361 119 3 chr6 90723150 90723436 -58793601 - MLT2B4 LTR ERVL -220 336 18 3 1277 471 306 83 0 chr6 90723481 90723638 -58793399 - MLT1B LTR MaLR -220 170 1 3 1277 360 0 0 0 chr6 90724531 90724571 -58792466 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 1277 839 175 21 0 chr6 90724610 90724753 -58792284 - B1_Mur3 SINE Alu -1 148 3 3 1277 861 149 171 26 chr6 90725322 90725515 -58791522 - URR1B DNA MER1_type 0 225 5 3 1277 212 339 0 0 chr6 90725986 90726051 -58790986 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1277 1704 209 17 14 chr6 90726060 90726405 -58790632 + ORR1D1 LTR MaLR 11 356 -18 3 1277 527 327 74 0 chr6 90726416 90726578 -58790459 - B3A SINE B2 -24 174 1 3 1277 259 239 14 0 chr6 90726622 90726693 -58790344 - ID4 SINE ID -10 73 2 3 1277 270 0 0 0 chr6 90726771 90726801 -58790236 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1277 262 333 10 0 chr6 90727492 90727588 -58789449 + L1M5 LINE L1 5784 5880 -360 3 1277 497 188 26 43 chr6 90727743 90727860 -58789177 - PB1D9 SINE Alu 0 120 6 3 1277 738 294 169 5 chr6 90727875 90728278 -58788759 + L1MB3 LINE L1 5683 6151 -32 3 1277 662 119 67 17 chr6 90728394 90728514 -58788523 - B1_Mur1 SINE Alu -1 148 23 3 1277 196 380 38 0 chr6 90729515 90729594 -58787443 + MIR SINE MIR 63 144 -118 3 1277 207 0 0 0 chr6 90730474 90730497 -58786540 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 3 1277 204 40 0 0 chr6 90731016 90731041 -58785996 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1277 360 43 0 0 chr6 90731131 90731177 -58785860 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1277 216 0 0 0 chr6 90731279 90731303 -58785734 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1277 224 303 30 0 chr6 90734600 90734666 -58782371 + L2a LINE L2 2992 3059 -367 3 1277 1528 52 0 0 chr6 90735864 90736056 -58780981 - B2_Mm1a SINE B2 0 193 2 3 1277 697 223 163 0 chr6 90736443 90736627 -58780410 - ID_B1 SINE B4 0 224 11 3 1277 233 246 61 15 chr6 90737446 90737512 -58779525 - ID4 SINE ID -6 77 9 3 1277 279 343 9 37 chr6 90737749 90737858 -58779179 + MIR SINE MIR 48 153 -109 3 1277 1375 169 33 133 chr6 90737994 90738215 -58778822 + ORR1C2 LTR MaLR 5 187 -197 3 1277 411 92 0 0 chr6 90738215 90738280 -58778757 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1277 1375 169 33 133 chr6 90738280 90738419 -58778618 + ORR1C2 LTR MaLR 188 329 -55 3 1277 564 205 27 0 chr6 90738900 90739012 -58778025 + ORR1C2 LTR MaLR 270 384 0 3 1277 5008 176 201 25 chr6 90739012 90740295 -58776742 + ORR1C2-int LTR MaLR 1 1509 0 3 1277 1451 147 122 167 chr6 90740295 90740696 -58776341 + ORR1C2 LTR MaLR 1 383 -1 3 1277 220 288 285 32 chr6 90742313 90742471 -58774566 + MIR SINE MIR 32 229 -33 3 1277 446 264 176 0 chr6 90743648 90743841 -58773196 - L1MD2 LINE L1 -365 5994 5768 3 1277 914 190 18 72 chr6 90744083 90744304 -58772733 + B3 SINE B2 3 211 -5 3 1277 1004 24 63 0 chr6 90744342 90744468 -58772569 + B1_Mm SINE Alu 2 135 -12 3 1277 399 31 30 15 chr6 90744468 90744534 -58772503 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 3 1277 344 351 65 29 chr6 90744651 90744930 -58772107 - L1MD2 LINE L1 -608 5751 5463 3 1277 998 219 198 0 chr6 90745328 90745570 -58771467 + B4A SINE B4 1 290 -2 3 1277 608 48 12 0 chr6 90745601 90745685 -58771352 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 1277 873 188 75 11 chr6 90747263 90747451 -58769586 + B3 SINE B2 2 201 -15 3 1277 304 308 64 27 chr6 90747480 90747590 -58769447 - Tigger7 DNA MER2_type -2377 114 1 3 1277 1941 159 19 25 chr6 90747593 90747961 -58769076 + ORR1D1 LTR MaLR 1 366 -8 3 1277 251 241 4 15 chr6 90748700 90748766 -58768271 - MIRc SINE MIR -98 170 103 3 1277 180 0 0 0 chr6 90749554 90749574 -58767463 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1277 186 216 39 0 chr6 90749805 90749856 -58767181 - L2b LINE L2 -3 3372 3320 3 1277 187 325 47 35 chr6 90751667 90751753 -58765284 - MIRb SINE MIR -132 136 47 3 1277 249 57 0 0 chr6 90751787 90751822 -58765215 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1277 1125 57 0 0 chr6 90751824 90751964 -58765073 - B1_Mus1 SINE Alu -7 141 2 3 1277 690 284 42 16 chr6 90753183 90753209 -58763828 - B3A SINE B2 0 198 174 3 1277 1516 184 180 22 chr6 90753209 90753571 -58763466 - MTD LTR MaLR 0 419 1 3 1277 690 284 42 16 chr6 90753571 90753737 -58763300 - B3A SINE B2 -25 173 1 3 1277 369 259 26 8 chr6 90753858 90753975 -58763062 - L1MD1 LINE L1 -4 6238 6120 3 1277 286 381 45 56 chr6 90754463 90754730 -58762307 - MER2 DNA MER2_type -3 342 79 3 1277 316 286 0 179 chr6 90754811 90754990 -58762047 - MER2B DNA MER2_type -167 169 23 3 1277 514 349 10 10 chr6 90755245 90755442 -58761595 - MER20B DNA MER1_type -330 453 257 3 1277 370 288 9 18 chr6 90755487 90755600 -58761437 + RSINE1 SINE B4 54 165 0 3 1277 666 0 0 0 chr6 90755632 90755706 -58761331 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 3 1277 229 308 26 0 chr6 90757596 90757674 -58759363 + MIR SINE MIR 78 157 -105 3 1277 624 207 37 7 chr6 90762553 90762689 -58754348 - B1_Mur1 SINE Alu -5 144 5 3 1277 21 0 0 0 chr6 90762898 90762919 -58754118 + AT_rich Low_complexity Low_complexity 1 21 0 3 1277 717 267 17 6 chr6 90764103 90764284 -58752753 - ID_B1 SINE B4 -2 222 40 3 1277 277 186 42 28 chr6 90765958 90766030 -58751007 + ID SINE ID 10 82 -142 3 1277 292 229 12 17 chr6 90766030 90766081 -58750956 + ID4 SINE ID 10 129 -23 3 1277 664 219 55 65 chr6 90766293 90766493 -58750544 + B3A SINE B2 1 198 0 3 1277 201 273 130 43 chr6 90766616 90766708 -58750329 - MER91C DNA Tip100 -16 124 25 3 1277 189 321 65 19 chr6 90767153 90767261 -58749776 + L2a LINE L2 3314 3426 0 3 1277 288 0 0 0 chr6 90769243 90769275 -58747762 + (G)n Simple_repeat Simple_repeat 1 32 0 3 1277 257 281 187 17 chr6 90769448 90769683 -58747354 + L2b LINE L2 2919 3193 -182 3 1277 256 333 31 23 chr6 90770328 90770457 -58746580 + MLT1K LTR MaLR 150 279 -316 3 1277 200 264 93 9 chr6 90771028 90771135 -58745902 - MIRb SINE MIR -108 160 45 3 1277 206 294 71 63 chr6 90772495 90772622 -58744415 - L2b LINE L2 -7 3368 3241 3 1277 264 267 71 127 chr6 90773822 90774019 -58743018 - L2b LINE L2 -1 3386 3201 3 1277 181 254 244 39 chr6 90774095 90774275 -58742762 - L2b LINE L2 -177 3249 3033 3 1277 808 235 76 5 chr6 90774317 90774514 -58742523 + B3 SINE B2 6 216 0 3 1277 412 269 149 11 chr6 90774583 90774771 -58742266 + L1MB7 LINE L1 5916 6129 -55 3 1277 325 282 122 5 chr6 90775342 90775538 -58741499 - L2 LINE L2 -345 3074 2856 3 1277 327 279 89 9 chr6 90776221 90776445 -58740592 - L2a LINE L2 -260 3166 2925 3 1277 292 298 41 12 chr6 90778186 90778299 -58738738 - MIRm SINE MIR -108 168 56 3 1277 713 299 24 0 chr6 90778768 90778935 -58738102 + B4 SINE B4 97 267 -25 3 1277 613 248 0 0 chr6 90779137 90779262 -58737775 - B1F2 SINE Alu 0 149 25 3 1277 318 323 156 31 chr6 90779291 90779451 -58737586 - B3A SINE B2 -18 180 1 3 1277 443 235 57 29 chr6 90780004 90780109 -58736928 + PB1 SINE Alu 19 126 -1 3 1277 3062 124 39 22 chr6 90780284 90780793 -58736244 - RLTR28 LTR ERVL -6 518 1 3 1277 361 36 0 0 chr6 90782370 90782426 -58734611 + Lx2B LINE L1 6945 7000 0 3 1277 340 272 25 58 chr6 90783067 90783188 -58733849 - MamRep38 DNA hAT -95 200 84 3 1277 310 331 63 0 chr6 90783394 90783521 -58733516 - MER58A DNA MER1_type -40 184 50 3 1277 237 319 43 11 chr6 90783560 90783652 -58733385 + L1M2 LINE L1 4843 4937 -1206 3 1277 795 180 187 21 chr6 90783654 90783841 -58733196 - MTE2b LTR MaLR -161 218 1 3 1277 227 152 0 21 chr6 90783878 90783925 -58733112 + CT-rich Low_complexity Low_complexity 3 48 0 3 1277 397 233 77 10 chr6 90783930 90784034 -58733003 - PB1D9 SINE Alu -7 113 3 3 1277 369 0 0 0 chr6 90784266 90784307 -58732730 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1277 354 45 0 0 chr6 90784328 90784372 -58732665 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 3 1277 382 339 70 0 chr6 90784372 90784487 -58732550 - ID_B1 SINE B4 -14 210 88 3 1277 650 281 33 0 chr6 90784516 90784669 -58732368 + RSINE1 SINE B4 4 161 -4 3 1277 496 189 100 36 chr6 90784707 90784817 -58732220 + B1_Mur2 SINE Alu 23 139 -10 3 1277 378 0 0 0 chr6 90784817 90784859 -58732178 + (CTAA)n Simple_repeat Simple_repeat 2 43 0 3 1277 308 322 68 7 chr6 90785211 90785358 -58731679 + MLT1A0 LTR MaLR 210 365 0 3 1277 1889 182 19 45 chr6 90785794 90786173 -58730864 - ORR1D1 LTR MaLR 0 374 6 3 1277 193 349 15 0 chr6 90786206 90786272 -58730765 - MIRb SINE MIR -80 188 122 3 1277 4236 162 79 71 chr6 90787903 90788781 -58728256 - RMER19B LTR ERVK -17 885 1 3 1277 281 238 178 84 chr6 90788893 90789095 -58727942 - L2a LINE L2 -258 3168 2948 4 1277 186 242 226 8 chr6 90791445 90791578 -58725459 + MIR SINE MIR 21 182 -80 4 1277 609 279 33 6 chr6 90791684 90791850 -58725187 - B3A SINE B2 -48 168 1 4 1277 187 54 0 51 chr6 90791978 90792017 -58725020 + (TTG)n Simple_repeat Simple_repeat 2 38 0 4 1277 357 311 27 45 chr6 90792017 90792128 -58724909 - PB1 SINE Alu -10 117 9 4 1277 507 276 18 95 chr6 90792212 90792380 -58724657 - RSINE1 SINE B4 0 165 11 4 1277 691 283 102 10 chr6 90792409 90792723 -58724314 - L1MEc LINE L1 -1807 4730 4388 4 1277 693 176 106 8 chr6 90792746 90792878 -58724159 - B1_Mur1 SINE Alu 0 149 5 4 1277 5176 199 49 35 chr6 90793064 90794181 -58722856 + Lx9 LINE L1 6505 7637 -7 4 1277 302 274 51 51 chr6 90794200 90794396 -58722641 - L1MC LINE L1 -2967 3179 2984 4 1277 291 237 17 17 chr6 90794469 90794529 -58722508 - tRNA-Ala-GCY_ tRNA tRNA -8 67 8 4 1277 313 218 345 68 chr6 90794543 90794720 -58722317 - L1M4 LINE L1 -3180 2966 2741 4 1277 960 165 85 30 chr6 90794734 90794934 -58722103 - MTEb LTR MaLR -5 374 164 4 1277 757 219 77 0 chr6 90795481 90795650 -58721387 - MTEb LTR MaLR -196 183 2 4 1277 470 295 147 47 chr6 90795673 90796121 -58720916 - L1MEc LINE L1 -3449 3088 2596 4 1277 385 284 51 29 chr6 90796176 90796314 -58720723 + B1_Mm SINE Alu 7 147 0 4 1277 356 237 24 73 chr6 90796328 90796451 -58720586 - L1MEc LINE L1 -4062 2571 2455 4 1277 438 69 0 0 chr6 90796480 90796538 -58720499 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1277 414 296 34 27 chr6 90796541 90796687 -58720350 - RSINE1 SINE B4 -15 150 4 4 1277 424 285 179 17 chr6 90796851 90797147 -58719890 - L1MEc LINE L1 -5543 1075 732 4 1277 522 0 0 0 chr6 90797209 90797267 -58719770 + (TTC)n Simple_repeat Simple_repeat 3 60 0 4 1277 369 0 0 0 chr6 90797267 90797308 -58719729 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1277 239 259 99 27 chr6 90797412 90797523 -58719514 - L1MEc LINE L1 -6195 423 305 4 1277 203 338 97 39 chr6 90798627 90798781 -58718256 + L2c LINE L2 2920 3082 -305 4 1277 2835 40 122 0 chr6 90798820 90799173 -58717864 + MTA_Mm LTR MaLR 1 396 0 4 1277 561 298 12 42 chr6 90800013 90800181 -58716856 + RSINE1 SINE B4 1 163 -2 4 1277 201 74 0 0 chr6 90800185 90800212 -58716825 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1277 1809 218 72 8 chr6 90801241 90801632 -58715405 + MTD LTR MaLR 1 405 -14 4 1277 225 256 156 62 chr6 90801965 90802061 -58714976 + B4 SINE B4 188 292 0 4 1277 441 0 0 0 chr6 90802681 90802730 -58714307 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1277 297 0 0 0 chr6 90802730 90802762 -58714275 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1277 854 285 18 90 chr6 90803087 90803322 -58713715 - B4 SINE B4 -4 288 71 4 1277 450 36 0 0 chr6 90803322 90803378 -58713659 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1277 288 0 0 0 chr6 90803378 90803409 -58713628 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1277 854 285 18 90 chr6 90803409 90803450 -58713587 - B4 SINE B4 -222 70 32 4 1277 653 0 0 13 chr6 90803468 90803546 -58713491 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 4 1277 414 0 0 0 chr6 90803546 90803592 -58713445 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1277 520 284 30 7 chr6 90803624 90803759 -58713278 - ID_B1 SINE B4 -1 223 86 4 1277 25 51 0 0 chr6 90803784 90803823 -58713214 + AT_rich Low_complexity Low_complexity 1 39 0 4 1277 214 227 29 29 chr6 90804121 90804189 -58712848 + (TA)n Simple_repeat Simple_repeat 1 68 0 4 1277 853 283 11 55 chr6 90804192 90804539 -58712498 - Lx5 LINE L1 -1133 5917 5550 4 1277 426 352 79 0 chr6 90804601 90804740 -58712297 - RSINE1 SINE B4 -11 154 5 4 1277 1662 158 75 7 chr6 90806509 90806697 -58710340 - ORR1C2 LTR MaLR 0 384 174 4 1277 558 0 0 0 chr6 90806697 90806759 -58710278 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 1277 1662 158 75 7 chr6 90806759 90806873 -58710164 - ORR1C2 LTR MaLR -211 173 61 4 1277 2079 142 36 9 chr6 90806873 90807325 -58709712 + RMER13A LTR ERVK 3 520 -388 4 1277 435 157 34 6 chr6 90807304 90807418 -58709619 - ORR1C2 LTR MaLR -272 122 2 4 1277 600 151 0 105 chr6 90807419 90807552 -58709485 - ORR1C2-int LTR MaLR 0 1509 1391 4 1277 1643 228 65 51 chr6 90807778 90808552 -58708485 + RMER1B Other Other 1 450 -616 4 1277 1314 216 37 0 chr6 90808559 90808828 -58708209 - ORR1C2-int LTR MaLR -1226 283 5 4 1277 1576 147 164 60 chr6 90808832 90808997 -58708040 - ORR1C2 LTR MaLR 0 384 191 4 1277 1143 89 0 0 chr6 90808997 90809176 -58707861 + (GA)n Simple_repeat Simple_repeat 2 180 0 4 1277 252 0 0 0 chr6 90809176 90809204 -58707833 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 4 1277 1576 147 164 60 chr6 90809204 90809385 -58707652 - ORR1C2 LTR MaLR -194 190 2 4 1277 207 256 0 0 chr6 90809618 90809661 -58707376 + L2b LINE L2 3028 3070 -305 4 1277 2071 155 25 14 chr6 90810013 90810380 -58706657 + ORR1D1 LTR MaLR 1 371 -3 4 1277 360 279 116 37 chr6 90810910 90811126 -58705911 + MER74A LTR ERVL 254 486 -72 4 1277 277 338 63 59 chr6 90812234 90812597 -58704440 + MTEb LTR MaLR 1 379 0 4 1277 2925 58 39 18 chr6 90812710 90813098 -58703939 + MTA_Mm LTR MaLR 1 396 0 4 1277 339 235 12 0 chr6 90813373 90813458 -58703579 - MTE-int LTR MaLR -166 1414 1329 4 1277 273 286 43 0 chr6 90813903 90813973 -58703064 - PB1D10 SINE Alu -35 82 10 4 1277 250 378 28 62 chr6 90813970 90814114 -58702923 + B4A SINE B4 18 156 -136 4 1277 237 61 0 0 chr6 90814159 90814179 -58702858 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1277 1120 54 0 109 chr6 90814179 90814344 -58702693 - B1_Mm SINE Alu 0 147 1 4 1277 237 61 0 0 chr6 90814344 90814356 -58702681 + (T)n Simple_repeat Simple_repeat 1 12 0 4 1277 532 309 56 24 chr6 90814942 90815191 -58701846 - L1MA7 LINE L1 -142 6149 5893 4 1277 206 212 24 36 chr6 90816141 90816224 -58700813 + A-rich Low_complexity Low_complexity 4 85 0 4 1277 329 315 127 40 chr6 90816533 90816761 -58700276 - Charlie1 DNA MER1_type -1750 1031 784 4 1277 246 271 71 0 chr6 90816773 90816858 -58700179 + L1M2 LINE L1 2395 2485 -4364 4 1277 592 295 67 11 chr6 90816914 90817092 -58699945 - MLT1A1 LTR MaLR 0 408 221 4 1277 280 280 111 22 chr6 90817245 90817380 -58699657 + L1M4c LINE L1 1670 1816 -4568 4 1277 524 292 140 76 chr6 90817386 90817794 -58699243 + L1M4c LINE L1 1945 2378 -4006 4 1277 540 0 0 0 chr6 90818394 90818454 -58698583 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1277 286 279 14 14 chr6 90818668 90818737 -58698300 + RMER15 LTR ERVL 300 368 -207 4 1277 390 258 80 36 chr6 90818758 90818895 -58698142 + RMER15 LTR ERVL 433 575 0 4 1277 267 93 0 0 chr6 90819293 90819336 -58697701 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 4 1277 2539 141 22 5 chr6 90819731 90820131 -58696906 + MTC LTR MaLR 7 413 -8 4 1277 265 211 18 0 chr6 90820135 90820192 -58696845 + MLT1A0 LTR MaLR 89 146 -219 4 1277 365 321 140 45 chr6 90820206 90820470 -58696567 + ORR1E LTR MaLR 71 359 0 4 1277 196 208 69 86 chr6 90821045 90821103 -58695934 - MER5A DNA MER1_type -41 148 92 4 1277 186 327 58 58 chr6 90822116 90822236 -58694801 + L2 LINE L2 1329 1448 -1971 4 1277 295 289 13 0 chr6 90824349 90824425 -58692612 - Tigger7 DNA MER2_type -7 2484 2408 4 1277 277 290 75 135 chr6 90824574 90824888 -58692149 + ORR1E LTR MaLR 91 366 -4 4 1277 3360 38 5 2 chr6 90824908 90825303 -58691734 + MTA_Mm LTR MaLR 1 396 0 4 1277 554 312 187 64 chr6 90825304 90825586 -58691451 - Tigger7 DNA MER2_type -1891 600 248 4 1277 6946 46 1 46 chr6 90825586 90826496 -58690541 + L1Md_F2 LINE L1 5711 6579 -3 4 1277 554 312 187 64 chr6 90826496 90826603 -58690434 - Tigger7 DNA MER2_type -2244 247 150 4 1277 827 214 26 5 chr6 90826603 90826796 -58690241 + B3A SINE B2 2 198 0 4 1277 554 312 187 64 chr6 90826796 90826939 -58690098 - Tigger7 DNA MER2_type -2342 149 1 4 1277 232 272 35 47 chr6 90827403 90827488 -58689549 + MLT1G1 LTR MaLR 286 369 -210 4 1277 2098 123 4 184 chr6 90827536 90828004 -58689033 + ORR1C2 LTR MaLR 1 384 0 4 1277 1536 241 98 21 chr6 90828328 90828717 -58688320 + MTD LTR MaLR 1 419 0 4 1277 191 331 43 71 chr6 90829192 90829332 -58687705 + MIR SINE MIR 21 156 -106 4 1277 239 263 0 17 chr6 90830331 90830389 -58686648 - LTR16C LTR ERVL -385 104 48 4 1277 389 323 46 41 chr6 90831840 90832034 -58685003 + RMER15 LTR ERVL 347 541 -34 4 1277 771 75 225 0 chr6 90832034 90832154 -58684883 + B1_Mus2 SINE Alu 1 147 0 4 1277 398 157 0 12 chr6 90832709 90832793 -58684244 + (TG)n Simple_repeat Simple_repeat 1 83 0 4 1278 271 180 0 0 chr6 90832973 90833023 -58684014 - MIRm SINE MIR -159 117 68 4 1278 1513 49 16 0 chr6 90833519 90833704 -58683333 + B2_Mm1t SINE B2 2 189 -4 4 1278 792 111 0 0 chr6 90833767 90833893 -58683144 + (TTCC)n Simple_repeat Simple_repeat 4 129 0 4 1278 208 220 102 0 chr6 90834124 90834183 -58682854 - L2 LINE L2 -534 2885 2821 4 1278 311 219 177 0 chr6 90835323 90835419 -58681618 + MER5A DNA MER1_type 1 113 -76 4 1278 185 250 97 90 chr6 90836210 90836311 -58680726 + L2a LINE L2 3004 3112 -314 4 1278 3592 79 122 23 chr6 90836311 90836842 -58680195 + MT2B2 LTR ERVL 1 584 0 4 1278 185 250 97 90 chr6 90836842 90836885 -58680152 + L2a LINE L2 3113 3149 -277 4 1278 473 228 0 0 chr6 90837025 90837117 -58679920 + MIR SINE MIR 49 140 -122 4 1278 793 288 37 50 chr6 90837467 90837789 -58679248 - MLT1A0 LTR MaLR -30 335 18 4 1278 962 50 0 0 chr6 90838924 90839044 -58677993 + B1_Mus2 SINE Alu 18 137 -10 4 1278 339 85 0 0 chr6 90839060 90839107 -58677930 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1278 258 32 0 0 chr6 90840496 90840527 -58676510 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 4 1278 296 347 8 16 chr6 90841461 90841587 -58675450 + (TCCA)n Simple_repeat Simple_repeat 1 125 0 4 1278 231 267 72 72 chr6 90841588 90841685 -58675352 - ORR1E LTR MaLR -4 375 279 4 1278 505 332 44 57 chr6 90841788 90842104 -58674933 - RMER15 LTR ERVL 0 575 264 4 1278 287 255 59 142 chr6 90842104 90842232 -58674805 - RMER15 LTR ERVL -418 157 43 4 1278 1700 26 0 0 chr6 90842232 90842424 -58674613 - B2_Mm1a SINE B2 0 193 2 4 1278 287 255 59 142 chr6 90842424 90842464 -58674573 - RMER15 LTR ERVL -533 42 3 4 1278 260 326 41 69 chr6 90842473 90842618 -58674419 - ORR1E LTR MaLR -197 162 22 4 1278 513 211 26 26 chr6 90845511 90845628 -58671409 - PB1D9 SINE Alu -2 118 2 4 1278 32 26 0 0 chr6 90845631 90845670 -58671367 + AT_rich Low_complexity Low_complexity 1 39 0 4 1278 429 244 162 44 chr6 90845690 90846020 -58671017 + L1MD1 LINE L1 5175 5532 -827 4 1278 283 324 126 7 chr6 90846020 90846163 -58670874 + MER2 DNA MER2_type 57 216 -129 5 1278 1529 192 60 19 chr6 90846353 90846672 -58670365 - Lx5 LINE L1 0 7050 6719 5 1278 3437 137 30 19 chr6 90846681 90847355 -58669682 + Lx5 LINE L1 5483 6169 -881 5 1278 446 260 40 8 chr6 90847549 90847673 -58669364 + L1MD1 LINE L1 6110 6237 -5 4 1278 544 289 123 77 chr6 90847710 90848087 -58668950 + MLT1G3 LTR MaLR 163 561 -34 5 1278 276 310 8 33 chr6 90848116 90848236 -58668801 + C-rich Low_complexity Low_complexity 2 118 0 5 1278 956 260 15 0 chr6 90849256 90849452 -58667585 + ID_B1 SINE B4 2 200 -24 5 1278 235 125 20 59 chr6 90849553 90849604 -58667433 - MIRc SINE MIR -107 161 113 5 1278 186 286 31 31 chr6 90849654 90849719 -58667318 - MIRc SINE MIR -120 148 84 5 1278 180 297 112 43 chr6 90849975 90850091 -58666946 - MIRc SINE MIR -57 211 88 5 1278 515 257 124 89 chr6 90850571 90850862 -58666175 - Tigger5 DNA MER2_type 0 2406 2106 5 1278 1173 238 42 31 chr6 90851542 90851802 -58665235 + B4 SINE B4 1 263 -29 5 1278 189 0 0 0 chr6 90851810 90851831 -58665206 + (TC)n Simple_repeat Simple_repeat 1 21 0 5 1278 396 0 0 0 chr6 90851831 90851874 -58665163 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1278 711 0 0 0 chr6 90851875 90851954 -58665083 + (CACAG)n Simple_repeat Simple_repeat 4 82 0 5 1278 345 222 46 35 chr6 90852676 90852918 -58664119 + (CATA)n Simple_repeat Simple_repeat 1 244 0 5 1278 2316 273 65 13 chr6 90852918 90853530 -58663507 + MTEb-int LTR MaLR 930 1573 -7 5 1278 1111 250 70 0 chr6 90853534 90853778 -58663259 + MTEb LTR MaLR 1 261 -118 5 1278 468 0 0 0 chr6 90854402 90854454 -58662583 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1278 1050 240 16 62 chr6 90854662 90854968 -58662069 + B4A SINE B4 1 292 0 5 1278 333 0 0 0 chr6 90854977 90855014 -58662023 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1278 645 291 0 6 chr6 90855319 90855478 -58661559 + RMER1B Other Other 10 167 -899 5 1278 303 28 0 0 chr6 90855478 90855514 -58661523 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1278 24 0 0 0 chr6 90855878 90855902 -58661135 + GC_rich Low_complexity Low_complexity 1 24 0 5 1278 1673 165 63 31 chr6 90857199 90857518 -58659519 + ORR1C1 LTR MaLR 1 329 -49 5 1278 260 100 0 0 chr6 90857533 90857573 -58659464 + Lx5 LINE L1 7011 7050 0 5 1278 406 56 37 0 chr6 90857590 90857644 -58659393 + ORR1C1 LTR MaLR 312 367 0 5 1278 444 228 168 7 chr6 90857658 90857795 -58659242 + L1MB3 LINE L1 5961 6119 -64 5 1278 429 278 18 112 chr6 90858772 90858942 -58658095 + B4 SINE B4 3 156 -136 5 1278 555 293 92 52 chr6 90858873 90859046 -58657991 - B3A SINE B2 -18 180 1 5 1278 490 40 40 0 chr6 90859072 90859148 -58657889 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 5 1278 539 196 6 11 chr6 90859190 90859314 -58657723 + B4 SINE B4 121 246 -46 5 1278 476 248 29 10 chr6 90859326 90859428 -58657609 + B1_Mur1 SINE Alu 41 144 -5 5 1278 27 0 0 0 chr6 90859507 90859534 -58657503 + AT_rich Low_complexity Low_complexity 1 27 0 5 1278 312 48 0 0 chr6 90859607 90859649 -58657388 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1278 250 344 92 92 chr6 90859661 90859802 -58657235 - ORR1E LTR MaLR -144 215 75 5 1278 207 284 14 29 chr6 90859822 90859891 -58657146 - MIRm SINE MIR -15 261 194 5 1278 183 357 42 42 chr6 90860505 90860625 -58656412 + MIRb SINE MIR 120 239 -29 5 1278 389 229 17 17 chr6 90861052 90861230 -58655807 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 5 1278 1117 158 34 15 chr6 90861481 90861687 -58655350 - B3 SINE B2 -4 212 3 5 1278 237 298 86 35 chr6 90861904 90862078 -58654959 - HAL1b LINE L1 -802 1207 1025 5 1278 247 286 86 43 chr6 90862346 90862580 -58654457 - HAL1b LINE L1 -1358 651 408 5 1278 244 273 254 0 chr6 90864220 90864330 -58652707 + L2a LINE L2 3289 3426 0 5 1278 407 181 23 30 chr6 90865478 90865609 -58651428 + CT-rich Low_complexity Low_complexity 3 132 0 5 1278 217 159 22 43 chr6 90866302 90866348 -58650689 + MIR SINE MIR 81 125 -83 5 1278 182 304 196 0 chr6 90866464 90866576 -58650461 + MIR SINE MIR 123 256 -6 5 1278 210 71 0 0 chr6 90867388 90867416 -58649621 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 5 1278 276 354 48 32 chr6 90868168 90868355 -58648682 + MIRb SINE MIR 8 197 -71 5 1278 742 180 256 0 chr6 90868482 90868511 -58648526 - B3 SINE B2 0 216 187 5 1278 447 87 0 0 chr6 90868511 90868580 -58648457 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1278 742 180 256 0 chr6 90868580 90868722 -58648315 - B3 SINE B2 -30 186 3 5 1278 505 299 52 28 chr6 90869139 90869428 -58647609 - L1M4 LINE L1 -954 5192 4897 5 1278 559 178 48 56 chr6 90869708 90869833 -58647204 - B1_Mur1 SINE Alu -11 138 15 5 1278 329 185 58 107 chr6 90869743 90869846 -58647191 - MT2B LTR ERVL -338 263 166 5 1278 266 0 0 29 chr6 90870536 90870571 -58646466 + (CCCA)n Simple_repeat Simple_repeat 1 34 0 5 1278 378 0 0 0 chr6 90871220 90871262 -58645775 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1278 426 20 0 0 chr6 90871264 90871315 -58645722 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1278 508 293 66 12 chr6 90871359 90871525 -58645512 - B4A SINE B4 -114 178 4 5 1278 798 249 39 5 chr6 90871973 90872179 -58644858 + B3 SINE B2 4 216 0 5 1278 227 246 0 32 chr6 90873166 90873229 -58643808 + ID4 SINE ID 1 61 -22 5 1278 335 271 38 48 chr6 90873291 90873477 -58643560 + CYRA11_Mm Unknown Y-chromosome 138 321 -296 5 1278 899 164 164 0 chr6 90873336 90873525 -58643512 - URR1A DNA MER1_type -6 220 1 5 1278 321 191 59 16 chr6 90873586 90873604 -58643433 - ID4_ SINE ID -59 93 7 5 1278 262 226 32 16 chr6 90873604 90873667 -58643370 - tRNA-Ala-GCY_ tRNA tRNA -9 66 3 5 1278 742 208 0 8 chr6 90874163 90874294 -58642743 + B3 SINE B2 1 130 -86 5 1278 306 0 0 0 chr6 90875091 90875125 -58641912 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1278 617 254 138 15 chr6 90876753 90877021 -58640016 - L1MB3 LINE L1 -55 6128 5828 5 1278 927 210 34 55 chr6 90877030 90877103 -58639934 + MTC LTR MaLR 182 246 -175 5 1278 1299 151 0 96 chr6 90877103 90877237 -58639800 - URR1B DNA MER1_type 0 225 97 5 1278 1234 75 104 0 chr6 90877237 90877410 -58639627 + B2_Mm2 SINE B2 3 193 -2 5 1278 1299 151 0 96 chr6 90877410 90877524 -58639513 - URR1B DNA MER1_type -129 96 1 5 1278 927 210 34 55 chr6 90877524 90877687 -58639350 + MTC LTR MaLR 247 413 -8 5 1278 380 256 106 31 chr6 90877691 90877852 -58639185 - L1M4 LINE L1 -467 5707 5535 5 1278 421 164 35 0 chr6 90877963 90878063 -58638974 - L1MA5 LINE L1 -293 6007 5904 5 1278 313 302 108 8 chr6 90878986 90879116 -58637921 + MIRb SINE MIR 42 184 -84 5 1278 287 331 24 41 chr6 90879535 90879658 -58637379 + LTR87 LTR ERVL? 265 385 -239 5 1278 261 164 164 0 chr6 90880157 90880212 -58636825 - MIRm SINE MIR -4 272 209 5 1278 578 277 98 39 chr6 90880378 90880581 -58636456 - B3 SINE B2 -1 215 1 5 1278 541 188 10 19 chr6 90880766 90880869 -58636168 - PB1D9 SINE Alu -18 102 1 5 1278 253 376 64 0 chr6 90880895 90881036 -58636001 + MIR SINE MIR 8 157 -105 5 1278 574 247 35 17 chr6 90882377 90882593 -58634444 + L1MA9 LINE L1 5794 6018 -282 5 1278 208 309 42 176 chr6 90882952 90883024 -58634013 + L2a LINE L2 2941 2999 -376 5 1278 899 205 109 10 chr6 90883024 90883216 -58633821 - B3 SINE B2 -5 211 1 5 1278 276 312 49 150 chr6 90883216 90883390 -58633647 + L2a LINE L2 3000 3170 -256 5 1278 258 32 0 0 chr6 90883473 90883504 -58633533 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 1278 270 0 0 0 chr6 90884593 90884623 -58632414 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1278 955 250 120 9 chr6 90885245 90885616 -58631421 + L1MB4 LINE L1 5695 6114 -66 5 1278 249 218 75 42 chr6 90885836 90885937 -58631100 + MIRb SINE MIR 22 119 -143 5 1278 725 225 33 0 chr6 90886182 90886333 -58630704 - B3 SINE B2 0 216 61 5 1278 405 208 39 0 chr6 90888637 90888714 -58628323 - ID4_ SINE ID 0 83 4 5 1278 213 237 0 78 chr6 90888940 90889004 -58628033 - MIRb SINE MIR -96 172 114 5 1278 223 246 48 32 chr6 90889184 90889247 -58627790 - L3 LINE CR1 -133 4356 4293 5 1278 233 223 156 12 chr6 90890138 90890283 -58626754 + MIRc SINE MIR 19 181 -27 5 1278 447 266 128 19 chr6 90891897 90892108 -58624929 + L1MB3 LINE L1 5948 6181 -2 5 1278 183 42 0 0 chr6 90892117 90892141 -58624896 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1278 539 266 117 80 chr6 90892596 90892870 -58624167 - MER47A DNA MER2_type 0 366 83 5 1278 701 279 12 12 chr6 90893966 90894126 -58622911 + RSINE1 SINE B4 4 163 -2 5 1278 481 340 40 66 chr6 90895507 90895781 -58621256 - MLT2B3 LTR ERVL -170 384 118 5 1278 420 241 172 31 chr6 90895686 90895849 -58621188 - MTEb LTR MaLR -193 186 1 5 1278 22 0 0 0 chr6 90896651 90896673 -58620364 + AT_rich Low_complexity Low_complexity 1 22 0 5 1278 400 191 46 28 chr6 90896676 90896784 -58620253 + PB1D10 SINE Alu 1 110 -7 5 1278 194 179 26 0 chr6 90896971 90897010 -58620027 + L2b LINE L2 3326 3365 -10 5 1278 261 0 0 0 chr6 90897180 90897209 -58619828 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1278 613 259 7 7 chr6 90897235 90897383 -58619654 + B1F1 SINE Alu 1 148 -1 5 1278 640 179 74 41 chr6 90897397 90897519 -58619518 + B1_Mur1 SINE Alu 19 144 -5 5 1278 753 185 0 40 chr6 90897562 90897714 -58619323 + B3 SINE B2 71 216 0 5 1278 657 236 300 0 chr6 90897753 90898100 -58618937 + L1MB3 LINE L1 5730 6180 -3 5 1278 473 343 50 35 chr6 90898165 90898482 -58618555 + LTR82A LTR ERVL 1 322 -550 5 1278 326 326 44 29 chr6 90899230 90899366 -58617671 - L3 LINE CR1 -756 3733 3596 6 1278 1354 216 104 17 chr6 90899671 90900010 -58617027 + MTD LTR MaLR 1 344 -63 6 1278 540 0 0 0 chr6 90900094 90900154 -58616883 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 6 1278 341 200 211 0 chr6 90900755 90900850 -58616187 - MIR SINE MIR -69 193 79 6 1278 298 330 10 96 chr6 90901194 90901392 -58615645 + RMER4B LTR ERVK 7 187 -398 6 1278 303 282 106 12 chr6 90901622 90901786 -58615251 + MIRc SINE MIR 19 206 -62 6 1278 199 250 0 0 chr6 90901905 90901945 -58615092 + MIR SINE MIR 106 145 -117 6 1278 856 258 48 108 chr6 90902033 90902385 -58614652 - MTEa LTR MaLR -48 331 1 6 1278 691 267 71 24 chr6 90902816 90903027 -58614010 - ID_B1 SINE B4 -2 222 2 6 1278 411 343 77 32 chr6 90903302 90903549 -58613488 + L2a LINE L2 3169 3426 0 6 1278 1647 251 69 27 chr6 90904156 90904537 -58612500 - L1MB2 LINE L1 -168 6003 5606 6 1278 256 284 40 0 chr6 90904537 90904611 -58612426 - ID4_ SINE ID -6 77 1 6 1278 1647 251 69 27 chr6 90904611 90904793 -58612244 - L1MB2 LINE L1 -566 5605 5416 6 1278 391 316 38 6 chr6 90904842 90905001 -58612036 - MIR SINE MIR -65 197 34 6 1278 3331 48 18 2 chr6 90905572 90905973 -58611064 + MTB_Mm LTR MaLR 1 407 0 6 1278 646 298 79 90 chr6 90906959 90907236 -58609801 + B4 SINE B4 1 274 -18 6 1278 251 310 0 17 chr6 90907214 90907273 -58609764 + RSINE1 SINE B4 108 165 0 6 1278 259 276 26 13 chr6 90907981 90908058 -58608979 - MTEb LTR MaLR -2 377 300 6 1278 2329 152 33 14 chr6 90908109 90908453 -58608584 - ORR1C2 LTR MaLR 0 384 33 6 1278 2676 117 47 28 chr6 90908453 90908875 -58608162 + RLTR23 LTR ERV1 1 430 0 6 1278 2329 152 33 14 chr6 90908875 90908896 -58608141 - ORR1C2 LTR MaLR -352 32 12 6 1278 519 187 207 43 chr6 90908921 90909061 -58607976 - Lx4B LINE L1 -1 7057 6895 6 1278 230 67 0 0 chr6 90909061 90909091 -58607946 - ORR1C2 LTR MaLR -354 30 1 6 1278 291 264 74 42 chr6 90909167 90909262 -58607775 - ORR1E LTR MaLR -238 121 24 6 1278 319 284 18 35 chr6 90910435 90910548 -58606489 + Tigger5 DNA MER2_type 2296 2406 0 6 1278 222 287 122 13 chr6 90910868 90910985 -58606052 + MIR SINE MIR 56 184 -84 6 1278 2191 253 48 5 chr6 90911537 90912161 -58604876 + L1MC1 LINE L1 5556 6206 -127 6 1278 1293 51 1 6 chr6 90912284 90912446 -58604591 + B2_Mm2 SINE B2 2 180 -36 6 1278 260 0 0 54 chr6 90912446 90912483 -58604554 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 6 1278 887 174 104 22 chr6 90912483 90912502 -58604535 + B3 SINE B2 181 198 -18 6 1278 206 338 82 27 chr6 90912706 90912852 -58604185 + L2 LINE L2 2748 2901 -518 6 1278 376 346 106 34 chr6 90914378 90914614 -58602423 + LTR16A LTR ERVL 127 379 -72 6 1278 413 249 147 28 chr6 90915281 90915503 -58601534 - MIR SINE MIR -4 258 8 6 1278 249 190 51 17 chr6 90915627 90915686 -58601351 - MIRb SINE MIR -91 177 117 6 1278 261 286 33 11 chr6 90917017 90917109 -58599928 + L1ME5 LINE L1 6097 6190 -4 6 1278 250 270 180 21 chr6 90917448 90917637 -58599400 - L2a LINE L2 -3 3423 3205 6 1278 21 0 0 0 chr6 90917747 90917768 -58599269 + AT_rich Low_complexity Low_complexity 1 21 0 6 1278 252 247 91 0 chr6 90917975 90918052 -58598985 + MIR SINE MIR 100 183 -79 6 1278 192 149 0 0 chr6 90918287 90918334 -58598703 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1278 1247 48 0 0 chr6 90918337 90918484 -58598553 - B1_Mm SINE Alu 0 147 1 6 1278 383 297 164 15 chr6 90918495 90918758 -58598279 + L1MB3 LINE L1 5831 6132 -51 6 1278 332 200 15 0 chr6 90918828 90918893 -58598144 - RSINE1 SINE B4 -21 144 79 6 1278 291 336 20 62 chr6 90918991 90919137 -58597900 - B4A SINE B4 -152 140 1 6 1278 278 340 18 18 chr6 90920223 90920388 -58596649 + CT-rich Low_complexity Low_complexity 1 165 0 6 1278 1182 62 0 14 chr6 90921034 90921182 -58595855 + B1_Mus2 SINE Alu 2 147 0 6 1278 905 239 120 22 chr6 90921494 90921811 -58595226 + MLT1A0 LTR MaLR 1 373 -1 6 1278 235 268 123 16 chr6 90922248 90922377 -58594660 + MIRb SINE MIR 20 164 -44 6 1278 297 0 0 0 chr6 90922505 90922538 -58594499 + (TGG)n Simple_repeat Simple_repeat 1 33 0 6 1278 883 168 0 0 chr6 90922627 90922764 -58594273 - B1_Mur1 SINE Alu -7 142 6 6 1278 245 314 92 76 chr6 90922765 90922941 -58594096 - Charlie7a DNA MER1_type -6 266 91 6 1278 318 72 0 35 chr6 90922941 90922999 -58594038 + L1Md_F3 LINE L1 6517 6572 -12 6 1278 245 314 92 76 chr6 90922999 90923084 -58593953 - Charlie7a DNA MER1_type -182 90 1 6 1278 495 0 0 0 chr6 90923539 90923594 -58593443 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1278 399 151 0 0 chr6 90923617 90923710 -58593327 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1278 633 269 81 84 chr6 90923713 90924070 -58592967 - MLT1A LTR MaLR 0 374 19 6 1278 355 277 10 29 chr6 90924921 90925025 -58592012 + MTEb LTR MaLR 278 379 0 6 1278 2732 128 12 10 chr6 90925202 90925620 -58591417 + MTC LTR MaLR 3 421 0 6 1278 1118 296 98 65 chr6 90925620 90926102 -58590935 + MLT1H1 LTR MaLR 57 555 0 6 1278 736 275 64 71 chr6 90926184 90926466 -58590571 + B4A SINE B4 1 280 -12 6 1278 867 37 0 0 chr6 90926515 90926622 -58590415 + (GA)n Simple_repeat Simple_repeat 2 108 0 6 1278 499 250 94 31 chr6 90926801 90927024 -58590013 - L1M4 LINE L1 -3570 2576 2340 6 1278 400 229 108 2 chr6 90927028 90927137 -58589900 - B1_Mm SINE Alu -3 117 1 6 1278 244 305 45 62 chr6 90927050 90927162 -58589875 - RLTR25B LTR ERVK -531 497 388 6 1278 1132 78 13 0 chr6 90927413 90927566 -58589471 + B2_Mm2 SINE B2 2 156 -39 6 1278 180 0 0 0 chr6 90927566 90927586 -58589451 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1278 524 321 53 26 chr6 90927598 90927787 -58589250 - B3A SINE B2 -4 194 1 6 1278 180 0 0 0 chr6 90928082 90928102 -58588935 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1278 269 304 90 48 chr6 90928504 90928670 -58588367 - MIR SINE MIR -93 175 3 6 1278 1918 144 34 54 chr6 90928825 90928928 -58588109 + ORR1B1 LTR MaLR 41 144 -250 6 1278 351 0 0 0 chr6 90928928 90928967 -58588070 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1278 1918 144 34 54 chr6 90928967 90929216 -58587821 + ORR1B1 LTR MaLR 145 386 -8 6 1278 265 343 99 8 chr6 90930105 90930262 -58586775 + MIRb SINE MIR 1 169 -99 6 1278 587 266 237 0 chr6 90930301 90930470 -58586567 + ID_B1 SINE B4 1 209 -15 6 1278 288 0 0 0 chr6 90930472 90930504 -58586533 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 6 1278 226 244 0 0 chr6 90930577 90930622 -58586415 + CT-rich Low_complexity Low_complexity 1 45 0 6 1278 935 206 55 10 chr6 90930630 90930831 -58586206 - B3 SINE B2 -6 210 1 6 1278 247 244 0 17 chr6 90931069 90931144 -58585893 + L2b LINE L2 3096 3165 -210 6 1278 203 224 20 0 chr6 90931330 90931343 -58585694 + MIRb SINE MIR 212 256 -7 6 1278 207 129 0 0 chr6 90931343 90931374 -58585663 + L2c LINE L2 3341 3371 -16 6 1278 272 266 0 69 chr6 90931415 90931516 -58585521 + L1ME2z LINE L1 6310 6403 -41 6 1278 324 0 0 0 chr6 90931516 90931552 -58585485 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1278 461 254 45 15 chr6 90931722 90931854 -58585183 - Lx7 LINE L1 -460 7236 7101 6 1278 255 284 159 0 chr6 90934653 90934794 -58582243 + MIRc SINE MIR 41 205 -63 6 1278 192 271 87 77 chr6 90935116 90935220 -58581817 + L3 LINE CR1 1057 1161 -3328 6 1278 441 0 0 0 chr6 90935766 90935815 -58581222 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1278 196 339 83 68 chr6 90935874 90936007 -58581030 - MIRm SINE MIR -140 136 2 6 1278 245 367 43 7 chr6 90936414 90936554 -58580483 + MER5A1 DNA MER1_type 16 160 -6 6 1278 194 92 43 58 chr6 90938419 90938488 -58578549 + (CGCGG)n Simple_repeat Simple_repeat 5 72 0 6 1278 234 275 0 0 chr6 90940018 90940087 -58576950 - L1MC LINE L1 -3106 3040 2972 6 1278 295 272 39 16 chr6 90940389 90940516 -58576521 - MamRep4096 DNA hAT? -214 212 83 6 1278 233 317 131 28 chr6 90941072 90941179 -58575858 - L2b LINE L2 -18 3357 3240 6 1278 412 276 49 7 chr6 90941197 90941338 -58575699 + MER45A DNA Tip100 17 164 -14 6 1278 283 349 64 32 chr6 90941395 90941552 -58575485 - MER63A DNA AcHobo -44 166 5 6 1278 2997 116 12 5 chr6 90942201 90942633 -58574404 - RLTR10C LTR ERVK -1 435 1 6 1278 236 386 98 0 chr6 90942828 90943043 -58573994 + LTR16A LTR ERVL 211 446 -5 6 1278 694 298 125 11 chr6 90943417 90943784 -58573253 - HAL1 LINE L1 -590 1917 1509 6 1278 673 318 89 55 chr6 90943962 90944439 -58572598 + L1MC LINE L1 4693 5187 -959 6 1278 924 117 0 33 chr6 90944439 90944590 -58572447 + B1_Mm SINE Alu 2 147 0 6 1278 470 318 89 55 chr6 90944590 90944604 -58572433 + L1MC LINE L1 5188 5201 -945 6 1278 613 264 29 0 chr6 90944643 90944817 -58572220 + B3A SINE B2 1 179 -19 6 1278 207 0 0 0 chr6 90944826 90944849 -58572188 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1278 280 337 10 19 chr6 90944896 90944999 -58572038 + PB1D10 SINE Alu 1 102 -15 6 1278 210 71 0 0 chr6 90945020 90945048 -58571989 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 6 1278 300 257 79 22 chr6 90945052 90945191 -58571846 + L1MC LINE L1 5188 5334 -812 6 1278 625 247 130 0 chr6 90945192 90945338 -58571699 + B3 SINE B2 1 165 -51 6 1278 342 0 0 0 chr6 90945338 90945376 -58571661 + (CATA)n Simple_repeat Simple_repeat 2 39 0 6 1278 495 276 76 16 chr6 90945376 90945387 -58571650 + B2_Mm2 SINE B2 153 166 -29 6 1278 812 196 0 14 chr6 90945387 90945532 -58571505 - B1_Mur1 SINE Alu -6 143 1 6 1278 495 276 76 16 chr6 90945532 90945557 -58571480 + B2_Mm2 SINE B2 167 193 -2 6 1278 4846 162 114 22 chr6 90945558 90946509 -58570528 + RMER1B Other Other 4 1041 -25 7 1278 284 273 26 0 chr6 90946694 90946771 -58570266 - RMER15 LTR ERVL -72 503 425 7 1278 479 315 12 18 chr6 90947389 90947460 -58569577 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1278 1166 42 0 0 chr6 90947460 90947604 -58569433 + B1_Mm SINE Alu 3 146 -1 7 1278 479 315 12 18 chr6 90947604 90947700 -58569337 + (CA)n Simple_repeat Simple_repeat 1 96 0 7 1278 187 325 73 43 chr6 90947860 90948024 -58569013 + MIRb SINE MIR 68 236 -32 7 1278 1182 41 0 14 chr6 90948088 90948236 -58568801 + B1_Mm SINE Alu 2 147 0 7 1278 374 300 212 18 chr6 90948300 90948517 -58568520 + L1MEe LINE L1 633 891 -3963 7 1278 453 252 17 9 chr6 90948520 90948636 -58568401 + PB1D10 SINE Alu 1 117 0 7 1278 754 199 35 0 chr6 90948639 90948780 -58568257 + B1_Mur1 SINE Alu 1 146 -3 7 1278 22 0 0 0 chr6 90948780 90948802 -58568235 + AT_rich Low_complexity Low_complexity 1 22 0 7 1278 242 343 86 86 chr6 90948956 90949150 -58567887 - MER113 DNA MER1_type -121 400 206 7 1278 585 290 59 41 chr6 90949150 90949369 -58567668 + ID_B1 SINE B4 2 224 0 7 1278 242 343 86 86 chr6 90949369 90949499 -58567538 - MER113 DNA MER1_type -316 205 76 7 1278 292 343 76 96 chr6 90949926 90950229 -58566808 - MLT1A LTR MaLR -72 302 6 7 1278 891 209 55 9 chr6 90950474 90950691 -58566346 + ORSL-2a DNA Tip100 116 342 0 7 1278 193 355 56 40 chr6 90951887 90952013 -58565024 - MIRb SINE MIR -47 221 94 7 1278 3077 51 13 0 chr6 90952439 90952834 -58564203 + MTB LTR MaLR 1 400 0 7 1278 644 328 56 67 chr6 90952841 90953200 -58563837 - ORR1E LTR MaLR -4 355 1 7 1278 396 246 51 87 chr6 90953300 90953438 -58563599 - MIR SINE MIR -129 133 1 7 1278 187 401 82 36 chr6 90954060 90954389 -58562648 + L2b LINE L2 3015 3358 -17 7 1278 632 143 9 0 chr6 90954523 90954635 -58562402 + CT-rich Low_complexity Low_complexity 2 114 0 7 1278 393 231 0 0 chr6 90954634 90954755 -58562282 + (TG)n Simple_repeat Simple_repeat 2 122 0 7 1278 1454 250 76 30 chr6 90954785 90955259 -58561778 + L1MA6 LINE L1 5546 6041 -259 7 1278 242 160 0 74 chr6 90955325 90955379 -58561658 - B2_Mm2 SINE B2 -99 96 47 7 1278 1185 112 6 17 chr6 90955441 90955622 -58561415 - B2_Mm1t SINE B2 -14 179 1 7 1278 357 198 34 34 chr6 90955623 90955712 -58561325 + B1F1 SINE Alu 61 149 0 7 1278 682 243 90 5 chr6 90955756 90955967 -58561070 + L1MA6 LINE L1 6068 6296 -4 7 1278 708 183 119 16 chr6 90956648 90956842 -58560195 + B3 SINE B2 3 216 0 7 1278 663 229 58 16 chr6 90957158 90957349 -58559688 - Charlie2a DNA MER1_type -1855 1006 808 7 1278 299 341 15 71 chr6 90957769 90957965 -58559072 - ORR1E LTR MaLR -172 187 3 7 1278 3510 186 91 21 chr6 90958358 90959165 -58557872 + Lx5 LINE L1 6143 7005 -45 7 1278 27 0 0 0 chr6 90959315 90959342 -58557695 + AT_rich Low_complexity Low_complexity 1 27 0 7 1278 303 283 54 103 chr6 90959522 90959707 -58557330 + B2_Mm2 SINE B2 1 176 -19 7 1278 1122 203 5 0 chr6 90959718 90959925 -58557112 + B3 SINE B2 8 215 -1 7 1278 720 188 58 0 chr6 90960269 90960407 -58556630 + B1_Mur1 SINE Alu 2 147 -2 7 1278 24 32 0 0 chr6 90960451 90960482 -58556555 + AT_rich Low_complexity Low_complexity 1 31 0 7 1278 486 221 31 39 chr6 90960516 90960643 -58556394 + RSINE1 SINE B4 4 129 -36 7 1278 1269 189 148 39 chr6 90961203 90961560 -58555477 + MTD LTR MaLR 10 405 -14 7 1278 232 167 0 0 chr6 90963855 90963903 -58553134 + A-rich Low_complexity Low_complexity 1 48 0 7 159 275 231 24 60 chr6 90963914 90963997 -58553040 + ID4 SINE ID 2 81 -2 7 1279 771 104 0 0 chr6 90965113 90965228 -58551809 + (TG)n Simple_repeat Simple_repeat 1 115 0 7 1279 243 320 139 18 chr6 90966909 90967132 -58549905 - L2 LINE L2 -338 3081 2832 7 1279 700 169 23 11 chr6 90968011 90968123 -58548914 + polypurine Low_complexity Low_complexity 2 114 0 7 1279 1000 136 11 0 chr6 90968123 90968299 -58548738 + (GGA)n Simple_repeat Simple_repeat 2 179 0 7 1279 700 169 23 11 chr6 90968299 90968360 -58548677 + polypurine Low_complexity Low_complexity 115 177 0 7 1279 297 281 0 63 chr6 90968467 90968657 -58548380 + (CCCTAA)n Simple_repeat Simple_repeat 3 180 0 7 1279 325 268 0 12 chr6 90971198 90971281 -58545756 + ID4_ SINE ID 2 83 0 7 1279 258 32 0 0 chr6 90971583 90971614 -58545423 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1279 27 49 0 0 chr6 90971624 90971665 -58545372 + AT_rich Low_complexity Low_complexity 1 41 0 7 1279 1578 11 0 0 chr6 90971712 90971902 -58545135 - L1Md_T LINE L1 0 6582 6393 7 1279 2436 124 62 10 chr6 90973256 90973656 -58543381 - MTC LTR MaLR 0 421 1 7 1279 492 304 160 0 chr6 90974563 90974757 -58542280 + MER2 DNA MER2_type 1 225 -120 7 1279 268 195 32 0 chr6 90974762 90974839 -58542198 + PB1D10 SINE Alu 33 127 0 7 1279 264 22 67 0 chr6 90974850 90974895 -58542142 + (TAAAAA)n Simple_repeat Simple_repeat 3 50 0 7 1279 380 162 24 59 chr6 90975022 90975107 -58541930 - PB1D10 SINE Alu -2 115 34 7 1279 440 127 0 53 chr6 90975726 90975801 -58541236 + B3A SINE B2 3 73 -125 7 1279 207 0 0 0 chr6 90975842 90975865 -58541172 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1279 22 56 0 0 chr6 90975919 90975955 -58541082 + AT_rich Low_complexity Low_complexity 1 36 0 7 1279 523 294 20 0 chr6 90976075 90976221 -58540816 - B1F SINE Alu 0 149 1 7 1279 207 0 0 0 chr6 90977159 90977182 -58539855 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 7 1279 186 269 19 0 chr6 90978218 90978270 -58538767 + MIRc SINE MIR 76 128 -140 7 1279 268 248 29 19 chr6 90978509 90978612 -58538425 + MER74A LTR ERVL 357 460 -98 7 1279 219 308 71 77 chr6 90980728 90980883 -58536154 + L2c LINE L2 3044 3197 -190 7 1279 334 303 66 0 chr6 90981179 90981301 -58535736 - MER5A1 DNA MER1_type -35 131 2 7 1279 810 278 66 22 chr6 90983328 90983514 -58533523 - B4 SINE B4 -6 286 96 7 1279 916 202 74 5 chr6 90983514 90983703 -58533334 - B3 SINE B2 -14 202 1 7 1279 810 278 66 22 chr6 90983703 90983788 -58533249 - B4 SINE B4 -197 95 3 7 1279 534 70 0 0 chr6 90983828 90983899 -58533138 + (GA)n Simple_repeat Simple_repeat 2 72 0 7 1279 693 126 0 0 chr6 90983895 90984006 -58533031 + (GGA)n Simple_repeat Simple_repeat 2 112 0 7 1279 705 56 0 0 chr6 90984006 90984096 -58532941 + (GAAAA)n Simple_repeat Simple_repeat 4 93 0 7 1279 483 18 0 0 chr6 90985933 90985989 -58531048 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1279 284 331 43 14 chr6 90986105 90986243 -58530794 + MLT1A1 LTR MaLR 267 408 0 7 1279 378 331 43 0 chr6 90987013 90987152 -58529885 + MER2 DNA MER2_type 84 228 -117 7 1279 1703 199 49 9 chr6 90988439 90988788 -58528249 + ORR1D1 LTR MaLR 1 363 -11 7 1279 248 307 127 52 chr6 90991075 90991209 -58525828 + MER5A DNA MER1_type 16 159 -30 7 1279 289 171 68 41 chr6 90993038 90993111 -58523926 + PB1D10 SINE Alu 40 114 -3 7 1279 1666 56 8 13 chr6 90994109 90994346 -58522691 + MT-int LTR MaLR 384 619 -479 7 1279 360 260 20 13 chr6 90998428 90998539 -58518498 + PB1 SINE Alu 17 120 0 7 1279 1296 49 54 11 chr6 90998545 90998731 -58518306 + B2_Mm2 SINE B2 1 194 -1 7 1279 994 194 30 5 chr6 90998734 90998936 -58518101 + B3 SINE B2 9 215 -1 7 1279 1709 278 142 20 chr6 91000160 91001076 -58515961 + L1M4 LINE L1 4003 5030 -1116 1 1279 543 250 8 8 chr6 91001136 91001257 -58515780 + RSINE1 SINE B4 29 149 -16 2 1279 37 23 0 0 chr6 91001314 91001358 -58515679 + AT_rich Low_complexity Low_complexity 1 44 0 3 1279 316 198 165 10 chr6 91001358 91001552 -58515485 + L1M4 LINE L1 5146 5369 -777 1 1279 987 215 9 53 chr6 91002633 91002859 -58514178 + B3 SINE B2 1 216 0 4 1279 251 308 118 27 chr6 91004807 91004917 -58512120 + PB1D9 SINE Alu 1 120 0 5 1279 784 182 36 0 chr6 91004922 91005059 -58511978 + B1_Mur1 SINE Alu 1 142 -7 6 1279 464 207 270 13 chr6 91005808 91005949 -58511088 - B3 SINE B2 -11 205 52 7 1279 403 264 114 43 chr6 91008287 91008611 -58508426 + L1MA5 LINE L1 5891 6237 -63 8 1279 198 0 0 0 chr6 91008611 91008633 -58508404 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 1279 406 331 88 51 chr6 91009915 91010290 -58506747 - MER47B DNA MER2_type 0 418 30 1 1279 1691 31 0 0 chr6 91011691 91011883 -58505154 - B2_Mm1t SINE B2 0 193 2 1 1279 613 221 59 79 chr6 91012150 91012302 -58504735 + B1F SINE Alu 1 149 0 1 1279 649 248 20 27 chr6 91013155 91013304 -58503733 + B1_Mur1 SINE Alu 2 149 0 1 1279 207 162 0 0 chr6 91013611 91013648 -58503389 + CT-rich Low_complexity Low_complexity 1 37 0 1 1279 788 209 126 0 chr6 91013648 91013839 -58503198 - B3 SINE B2 -1 215 1 1 1279 277 176 39 0 chr6 91013959 91014010 -58503027 + PB1 SINE Alu 73 125 -2 1 1279 506 43 0 14 chr6 91014082 91014152 -58502885 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1279 529 198 8 79 chr6 91014292 91014418 -58502619 - PB1D10 SINE Alu 0 117 1 1 1279 1108 204 105 5 chr6 91014692 91015027 -58502010 - MTD LTR MaLR 0 419 22 1 1279 404 262 0 0 chr6 91015396 91015476 -58501561 + ID4_ SINE ID 1 80 -3 2 1279 1619 195 115 37 chr6 91016049 91016432 -58500605 + MTD LTR MaLR 3 415 -4 2 1279 294 235 0 120 chr6 91016495 91016587 -58500450 + PB1D9 SINE Alu 4 84 -36 2 1279 315 0 0 0 chr6 91016602 91016637 -58500400 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1279 980 294 158 20 chr6 91016733 91017191 -58499846 - L1MB2 LINE L1 -191 5980 5443 2 1279 1013 194 31 5 chr6 91017191 91017383 -58499654 - B3A SINE B2 0 198 2 2 1279 980 295 149 19 chr6 91017383 91017578 -58499459 - L1MB2 LINE L1 -729 5442 5233 2 1279 249 306 28 0 chr6 91017825 91017897 -58499140 - MamRep137 DNA TcMar? -355 89 16 2 1279 868 259 47 74 chr6 91021202 91021448 -58495589 - MTD LTR MaLR 0 419 176 2 1279 180 0 0 0 chr6 91021448 91021468 -58495569 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1279 664 197 47 0 chr6 91021468 91021595 -58495442 - B1_Mur2 SINE Alu -12 137 5 2 1279 868 259 47 74 chr6 91021595 91021685 -58495352 - MTD LTR MaLR -244 175 92 2 1279 242 299 73 38 chr6 91022160 91022294 -58494743 - MIRc SINE MIR -60 202 72 3 1279 2387 124 8 0 chr6 91022694 91023050 -58493987 + ORR1B2 LTR MaLR 1 359 -8 3 1279 204 294 87 50 chr6 91024906 91025067 -58491970 + L2c LINE L2 2916 3082 -305 3 1279 245 250 104 0 chr6 91027259 91027355 -58489682 - MIR SINE MIR -70 192 87 3 1279 368 300 52 126 chr6 91027413 91027615 -58489422 + B4A SINE B4 12 206 -86 3 1279 524 231 155 48 chr6 91027683 91027851 -58489186 + B3A SINE B2 1 186 -9 3 1279 669 318 28 14 chr6 91028268 91028482 -58488555 + MTE-int LTR MaLR 1095 1311 -269 3 1279 2326 139 56 43 chr6 91028497 91028589 -58488448 - MTD LTR MaLR 0 419 335 3 1279 1266 183 5 9 chr6 91028589 91028804 -58488233 - B3 SINE B2 0 216 3 3 1279 2326 139 56 43 chr6 91028804 91029125 -58487912 - MTD LTR MaLR -85 334 1 3 1279 191 125 0 24 chr6 91029649 91029690 -58487347 + (CCA)n Simple_repeat Simple_repeat 3 42 0 3 1279 1170 176 31 0 chr6 91029833 91030026 -58487011 + B3 SINE B2 2 200 -16 4 1279 468 0 0 0 chr6 91030029 91030081 -58486956 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1279 670 230 132 6 chr6 91030096 91030262 -58486775 + B3 SINE B2 1 187 -29 4 1279 387 0 0 0 chr6 91030726 91030769 -58486268 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1279 319 230 260 8 chr6 91031050 91031177 -58485860 - MTEb LTR MaLR -34 345 187 4 1279 3354 45 0 10 chr6 91031645 91032045 -58484992 + MTA_Mm LTR MaLR 1 396 0 4 1279 8234 63 25 6 chr6 91032045 91033122 -58483915 + MTA_Mm-int LTR MaLR 1 1098 0 4 1279 3317 48 0 10 chr6 91033122 91033522 -58483515 + MTA_Mm LTR MaLR 1 396 0 4 1279 893 175 7 0 chr6 91033861 91034004 -58483033 - B1_Mur4 SINE Alu -2 148 5 4 1279 1443 73 16 0 chr6 91034755 91034946 -58482091 + B2_Mm2 SINE B2 2 195 0 4 1279 222 62 0 0 chr6 91034958 91034990 -58482047 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1279 313 208 115 0 chr6 91035158 91035254 -58481783 + L1MB3 LINE L1 5653 5759 -412 4 1279 228 269 162 45 chr6 91035359 91035581 -58481456 + L1MB3 LINE L1 5936 6183 0 4 1279 713 192 202 6 chr6 91035589 91035726 -58481311 + B3 SINE B2 4 173 -43 5 1279 252 0 0 0 chr6 91035726 91035754 -58481283 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 5 1279 713 192 202 6 chr6 91035754 91035794 -58481243 + B3 SINE B2 174 215 -1 5 1279 1147 82 0 20 chr6 91036067 91036217 -58480820 + B1_Mus1 SINE Alu 2 148 0 5 1279 270 73 0 0 chr6 91036268 91036309 -58480728 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 5 1279 1110 211 0 5 chr6 91036317 91036512 -58480525 - B3 SINE B2 -10 206 13 5 1279 21 36 0 0 chr6 91036524 91036552 -58480485 + AT_rich Low_complexity Low_complexity 1 28 0 5 1279 443 302 132 0 chr6 91036572 91036731 -58480306 - B3A SINE B2 -18 180 1 5 1279 254 263 39 13 chr6 91036741 91036818 -58480219 - ID4_ SINE ID 0 83 5 5 1279 226 284 128 0 chr6 91038547 91038656 -58478381 + L1MC4 LINE L1 7542 7664 -378 5 1279 1065 200 52 24 chr6 91038722 91038932 -58478105 - B3 SINE B2 0 216 1 5 1279 304 346 8 0 chr6 91038932 91039062 -58477975 + L1MC4 LINE L1 7768 7898 -144 5 1279 298 0 48 0 chr6 91039230 91039272 -58477765 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1279 337 229 153 24 chr6 91039273 91039358 -58477679 - RSINE1 SINE B4 -20 145 50 6 1279 253 278 224 11 chr6 91039463 91039573 -58477464 + MIRb SINE MIR 20 154 -54 6 1279 299 322 89 16 chr6 91040029 91040152 -58476885 - MIRb SINE MIR -89 179 48 6 1279 231 302 105 151 chr6 91040271 91040556 -58476481 - ORR1E LTR MaLR -85 274 3 6 1279 762 264 40 25 chr6 91040629 91040831 -58476206 + B3 SINE B2 1 205 -11 6 1279 924 184 131 37 chr6 91040939 91041178 -58475859 + ORR1B2 LTR MaLR 1 236 -110 6 1279 564 223 110 84 chr6 91041278 91041469 -58475568 + B3A SINE B2 3 198 0 6 1279 922 285 142 30 chr6 91043031 91043205 -58473832 + RCHARR1 DNA MER1_type 45 249 -725 6 1279 596 217 0 40 chr6 91043205 91043330 -58473707 - PB1D9 SINE Alu 0 120 1 6 1279 922 285 142 30 chr6 91043330 91043557 -58473480 + RCHARR1 DNA MER1_type 250 491 -483 6 1279 403 295 49 0 chr6 91043568 91043690 -58473347 + ID_B1 SINE B4 87 214 -10 7 1279 1447 282 28 5 chr6 91043759 91044148 -58472889 + RCHARR1 DNA MER1_type 574 971 -3 6 1279 244 286 20 30 chr6 91044312 91044413 -58472624 + ORR1B2 LTR MaLR 278 377 -2 6 1279 565 247 79 99 chr6 91044476 91044678 -58472359 + ID_B1 SINE B4 1 198 -26 7 1279 1800 88 105 89 chr6 91044725 91045049 -58471988 + ORR1A4 LTR MaLR 1 329 0 7 1279 190 272 219 0 chr6 91045340 91045420 -58471617 + MIRm SINE MIR 72 171 -97 7 1279 875 235 29 6 chr6 91045673 91045844 -58471193 - B3 SINE B2 -36 180 6 7 1279 302 306 102 75 chr6 91045893 91046295 -58470742 + L1MB7 LINE L1 5727 6139 -45 7 1279 814 196 106 20 chr6 91046296 91046494 -58470543 + B3 SINE B2 2 216 0 7 1279 414 365 61 9 chr6 91046593 91046806 -58470231 + MER58A DNA MER1_type 1 224 0 7 1279 1563 184 88 36 chr6 91047303 91047719 -58469318 + RMER16 LTR ERVK 1 532 -1 7 1279 1335 55 48 27 chr6 91049339 91049527 -58467510 - B2_Mm2 SINE B2 -1 194 3 7 1279 420 255 143 0 chr6 91049727 91049825 -58467212 + PB1 SINE Alu 14 125 -2 8 1279 410 277 125 6 chr6 91049830 91049990 -58467047 + B3A SINE B2 2 180 -18 8 1279 315 347 8 75 chr6 91050189 91050323 -58466714 + B4 SINE B4 74 198 -94 8 1279 722 201 14 63 chr6 91050219 91050362 -58466675 + B1_Mur2 SINE Alu 14 149 0 8 1279 390 243 65 9 chr6 91050413 91050521 -58466516 + B3A SINE B2 79 192 -6 8 1279 339 247 25 0 chr6 91050548 91050629 -58466408 + ID2 SINE ID 1 83 0 8 1279 380 341 177 3 chr6 91050711 91051005 -58466032 + MER2 DNA MER2_type 1 345 0 8 1279 201 159 0 0 chr6 91051607 91051651 -58465386 + C-rich Low_complexity Low_complexity 1 44 0 8 1279 470 250 158 0 chr6 91051740 91051924 -58465113 - Tigger7 DNA MER2_type -8 2483 2271 8 1279 265 194 0 82 chr6 91051917 91051990 -58465047 - Tigger7 DNA MER2_type -2373 118 52 8 1279 446 265 100 29 chr6 91052560 91052700 -58464337 + ID_B1 SINE B4 72 221 -3 8 1279 378 0 0 0 chr6 91053063 91053105 -58463932 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1279 202 200 0 0 chr6 91053106 91053151 -58463886 + GA-rich Low_complexity Low_complexity 1 45 0 9 1279 286 339 15 0 chr6 91053156 91053286 -58463751 + L1MD3 LINE L1 7683 7814 -181 9 1279 1043 47 0 15 chr6 91053426 91053557 -58463480 - B1_Mm SINE Alu -2 145 17 9 1279 1708 180 90 42 chr6 91053555 91053956 -58463081 + BGLII_B LTR ERVK 12 431 -10 9 1279 293 93 19 0 chr6 91054650 91054704 -58462333 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 9 1279 1955 163 42 62 chr6 91055993 91056379 -58460658 + ORR1C1 LTR MaLR 1 378 0 9 1279 404 287 167 52 chr6 91058193 91058325 -58458712 + MLT1A0 LTR MaLR 19 170 -195 9 1279 360 0 0 0 chr6 91058325 91058365 -58458672 + (CCA)n Simple_repeat Simple_repeat 3 42 0 9 1279 404 287 167 52 chr6 91058365 91058537 -58458500 + MLT1A0 LTR MaLR 171 358 -7 9 1279 183 80 0 0 chr6 91058719 91058744 -58458293 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 9 1279 458 277 145 11 chr6 91060065 91060251 -58456786 - B3 SINE B2 0 216 6 1 1279 349 207 63 0 chr6 91060510 91060621 -58456416 + L1MB3 LINE L1 5953 6070 -113 1 1279 635 236 160 11 chr6 91060705 91060893 -58456144 + B3 SINE B2 1 216 0 1 1279 1928 168 69 9 chr6 91062385 91062733 -58454304 - MTD LTR MaLR -50 369 1 1 1279 1111 69 21 0 chr6 91062775 91062919 -58454118 + B1_Mus1 SINE Alu 1 147 -1 1 1279 1014 239 24 10 chr6 91062937 91063144 -58453893 - B3 SINE B2 -6 210 1 1 1279 801 196 11 98 chr6 91063307 91063515 -58453522 + B3 SINE B2 3 198 0 1 1279 198 0 0 0 chr6 91063541 91063563 -58453474 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1279 273 203 83 42 chr6 91065541 91065613 -58451424 - B1F1 SINE Alu -64 85 11 1 1279 229 120 78 20 chr6 91065631 91065682 -58451355 + BLACKJACK DNA AcHobo 2349 2402 -542 1 1279 830 138 223 16 chr6 91065742 91065926 -58451111 - URR1A DNA MER1_type 0 226 5 1 1279 1607 221 51 8 chr6 91067517 91067869 -58449168 + MTD LTR MaLR 10 376 -43 1 1279 579 96 0 0 chr6 91068456 91068539 -58448498 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1279 180 111 0 0 chr6 91068539 91068566 -58448471 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 1 1279 441 264 68 18 chr6 91068646 91068836 -58448201 - MTC LTR MaLR -36 385 171 1 1279 473 238 135 12 chr6 91068901 91069071 -58447966 + L1MD2 LINE L1 5643 5833 -526 1 1279 532 235 133 8 chr6 91069102 91069222 -58447815 + B3 SINE B2 1 135 -81 1 1279 646 262 7 0 chr6 91069220 91069361 -58447676 - RSINE1 SINE B4 -22 143 2 1 1279 520 288 119 15 chr6 91070098 91070145 -58446892 - MER113 DNA MER1_type 0 521 477 1 1279 198 0 0 0 chr6 91070145 91070167 -58446870 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1 1279 520 288 119 15 chr6 91070167 91070380 -58446657 - MER113 DNA MER1_type -45 476 234 1 1279 3329 57 0 128 chr6 91070845 91071345 -58445692 + RLTR10C LTR ERVK 1 436 0 1 1279 488 248 132 0 chr6 91071362 91071491 -58445546 + B1_Mur2 SINE Alu 1 146 -3 1 1279 793 218 45 30 chr6 91071905 91072104 -58444933 + B3 SINE B2 1 202 -14 1 1279 321 269 37 9 chr6 91072181 91072290 -58444747 + PB1D10 SINE Alu 1 112 -5 1 1279 272 317 103 88 chr6 91072417 91072621 -58444416 + MLT2B2 LTR ERVL 3 209 -306 1 1279 430 307 144 16 chr6 91072724 91072911 -58444126 + B4 SINE B4 1 216 -76 1 1279 366 23 0 0 chr6 91072911 91072954 -58444083 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1 1279 236 370 59 20 chr6 91072961 91073063 -58443974 + B4A SINE B4 38 143 -149 1 1279 221 312 62 0 chr6 91073051 91073131 -58443906 + RSINE1 SINE B4 79 163 -2 1 1279 237 108 0 0 chr6 91073242 91073279 -58443758 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1279 955 228 0 65 chr6 91073295 91073511 -58443526 - B3 SINE B2 0 216 15 1 1279 1056 60 0 0 chr6 91073756 91073905 -58443132 + (TG)n Simple_repeat Simple_repeat 1 149 0 1 1279 294 29 0 0 chr6 91074093 91074128 -58442909 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1279 712 216 60 13 chr6 91074132 91074282 -58442755 - B3A SINE B2 -41 157 1 1 1279 1133 267 88 69 chr6 91075139 91075573 -58441464 + RMER5 LTR ERV1 1 442 -92 1 1279 186 167 0 0 chr6 91075579 91075615 -58441422 + A-rich Low_complexity Low_complexity 4 39 0 1 1279 254 95 24 0 chr6 91075759 91075801 -58441236 + (CGGGGG)n Simple_repeat Simple_repeat 6 48 0 1 1279 608 218 0 0 chr6 91076466 91076576 -58440461 - PB1D10 SINE Alu -2 115 6 1 1279 715 272 56 18 chr6 91076579 91076919 -58440118 + L1MB7 LINE L1 5810 6162 -22 1 1279 1434 54 27 16 chr6 91076919 91077107 -58439930 + B2_Mm2 SINE B2 2 191 -4 1 1279 436 202 0 78 chr6 91077412 91077498 -58439539 + B1_Mur3 SINE Alu 7 84 -65 1 1279 1075 196 71 9 chr6 91077498 91077709 -58439328 - MTD LTR MaLR 0 419 196 1 1279 226 330 43 21 chr6 91077701 91077794 -58439243 + RMER12 LTR ERVK 750 844 -478 1 1279 488 324 91 54 chr6 91077723 91077909 -58439128 - B3A SINE B2 -2 196 4 1 1279 980 221 67 0 chr6 91077951 91078146 -58438891 - B3 SINE B2 -8 208 1 1 1279 342 198 196 10 chr6 91078147 91078244 -58438793 - L1MB3 LINE L1 -40 6143 6029 1 1279 183 42 0 0 chr6 91078341 91078365 -58438672 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1279 623 13 13 0 chr6 91078365 91078440 -58438597 + (GA)n Simple_repeat Simple_repeat 1 77 0 1 1279 262 176 0 93 chr6 91078466 91078541 -58438496 - L1MB3 LINE L1 -420 5763 5696 1 1279 243 284 93 21 chr6 91078767 91078864 -58438173 + RMER5 LTR ERV1 431 534 0 1 1279 976 225 34 0 chr6 91079119 91079328 -58437709 + B3 SINE B2 1 216 0 1 1279 191 81 54 0 chr6 91079449 91079486 -58437551 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1279 253 317 38 9 chr6 91079486 91079591 -58437446 + ID_B1 SINE B4 69 176 -48 1 1279 527 216 29 0 chr6 91079504 91079606 -58437431 + PB1D9 SINE Alu 9 113 -7 1 1279 229 83 41 20 chr6 91080007 91080056 -58436981 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1 1279 186 233 0 0 chr6 91080056 91080116 -58436921 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1279 460 328 39 5 chr6 91080231 91080436 -58436601 + L1M5 LINE L1 5478 5689 -475 1 1279 245 294 128 12 chr6 91080439 91080525 -58436512 + PB1 SINE Alu 7 102 -25 1 1279 236 284 15 0 chr6 91080582 91080649 -58436388 + L1M5 LINE L1 5536 5603 -561 1 1279 240 35 0 0 chr6 91080759 91080788 -58436249 + (GGA)n Simple_repeat Simple_repeat 2 30 0 1 1279 302 269 64 0 chr6 91081285 91081363 -58435674 + L1M3 LINE L1 5499 5581 -590 1 1279 1896 244 96 95 chr6 91081699 91082647 -58434390 - RLTR19-int LTR ERVK -1665 4472 3524 1 1279 326 252 133 8 chr6 91082938 91083058 -58433979 - MYSERV6-int LTR ERVK -277 8682 8548 1 1279 278 248 57 9 chr6 91083148 91083254 -58433783 - RLTR19-int LTR ERVK -3253 2884 2774 1 1279 290 167 0 18 chr6 91083293 91083348 -58433689 - MYSERV6-int LTR ERVK -1521 7438 7385 1 1279 942 138 7 0 chr6 91083414 91083552 -58433485 - B1_Mus2 SINE Alu 0 147 9 1 1279 599 251 56 39 chr6 91083565 91083899 -58433138 - RLTR19-int LTR ERVK -3557 2580 1948 1 1279 279 0 0 0 chr6 91084096 91084127 -58432910 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1279 763 143 123 0 chr6 91084129 91084283 -58432754 - B2_Mm2 SINE B2 0 195 23 1 1279 2690 146 69 38 chr6 91084862 91085366 -58431671 - RLTR11A LTR ERVK -8 520 1 1 1279 887 190 17 6 chr6 91085366 91085541 -58431496 + RLTR42-int LTR ERVK 1152 1328 -4194 1 1279 317 228 87 0 chr6 91085587 91085679 -58431358 + MYSERV6-int LTR ERVK 7024 7123 -1836 1 1279 317 169 0 15 chr6 91085712 91085778 -58431259 + RLTR19-int LTR ERVK 896 960 -5177 1 1279 246 274 16 0 chr6 91086444 91086506 -58430531 - RMER15 LTR ERVL -19 556 494 1 1279 456 246 199 17 chr6 91087675 91087856 -58429181 - RMER15 LTR ERVL -87 488 275 1 1279 1043 247 110 12 chr6 91087904 91088231 -58428806 + MTD LTR MaLR 42 419 0 1 1279 983 242 5 18 chr6 91088630 91088849 -58428188 + B3 SINE B2 1 216 0 1 1279 515 272 25 30 chr6 91088878 91089138 -58427899 - ORR1E LTR MaLR -13 366 4 1 1279 225 305 75 125 chr6 91089251 91089371 -58427666 - RMER13A LTR ERVK -64 796 683 1 1279 1789 225 79 25 chr6 91089466 91089909 -58427128 - RMER13A LTR ERVK -393 467 1 1 1279 477 0 0 0 chr6 91090534 91090587 -58426450 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1279 261 0 0 0 chr6 91090587 91090615 -58426422 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1279 315 71 0 0 chr6 91090765 91090807 -58426230 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1 1279 1021 207 49 10 chr6 91090808 91091013 -58426024 - B3 SINE B2 0 216 4 1 1279 582 277 70 29 chr6 91091063 91091234 -58425803 - B3A SINE B2 -16 182 5 1 1279 1702 21 0 0 chr6 91091341 91091530 -58425507 + B2_Mm1t SINE B2 2 190 -3 1 1279 1174 50 0 0 chr6 91091545 91091684 -58425353 + B1_Mus1 SINE Alu 2 140 -8 1 1279 363 44 0 0 chr6 91091684 91091729 -58425308 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1279 1698 186 109 34 chr6 91091980 91092364 -58424673 - MTD LTR MaLR -4 415 3 1 1279 1260 231 127 27 chr6 91093114 91093138 -58423899 + MTEa LTR MaLR 5 23 -356 1 1279 920 191 94 16 chr6 91093138 91093169 -58423868 - B3 SINE B2 -10 206 176 1 1279 432 0 0 0 chr6 91093169 91093217 -58423820 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1279 920 191 94 16 chr6 91093217 91093376 -58423661 - B3 SINE B2 -41 175 1 1 1279 1260 231 127 27 chr6 91093376 91093689 -58423348 + MTEa LTR MaLR 24 376 -3 1 1279 1948 138 10 83 chr6 91093739 91094124 -58422913 + ORR1A2 LTR MaLR 1 374 0 1 1280 270 284 91 9 chr6 91095263 91095373 -58421664 - MIR3 SINE MIR -30 178 60 1 1280 302 341 135 18 chr6 91095552 91095722 -58421315 - B3A SINE B2 -8 190 1 1 1280 911 236 10 25 chr6 91095850 91096050 -58420987 - B3 SINE B2 -2 214 18 1 1280 368 357 59 27 chr6 91096171 91096358 -58420679 - MER53 DNA hAT 0 193 1 1 1280 190 333 0 40 chr6 91096819 91096894 -58420143 + MIR SINE MIR 76 147 -115 1 1280 333 296 25 42 chr6 91097304 91097424 -58419613 + MLT1H2 LTR MaLR 1 118 -371 1 1280 410 216 165 41 chr6 91097996 91098117 -58418920 - B1_Mus1 SINE Alu 0 148 13 1 1280 310 344 24 0 chr6 91098005 91098130 -58418907 - ID_B1 SINE B4 -5 219 92 1 1280 373 292 9 62 chr6 91098215 91098328 -58418709 - PB1 SINE Alu -17 110 4 1 1280 545 291 43 19 chr6 91098578 91098739 -58418298 + RSINE1 SINE B4 1 165 0 1 1280 266 73 24 0 chr6 91098740 91098781 -58418256 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 1 1280 4289 48 0 2 chr6 91098806 91099310 -58417727 - RLTR1C LTR ERV1 0 503 1 1 1280 1007 270 29 22 chr6 91099640 91099916 -58417121 + B4 SINE B4 2 279 -13 1 1280 439 70 14 14 chr6 91099942 91100015 -58417022 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1280 314 305 59 0 chr6 91100155 91100273 -58416764 + L1MB8 LINE L1 5812 5936 -242 2 1280 210 261 124 52 chr6 91100366 91100463 -58416574 + B4 SINE B4 71 174 -118 2 1280 261 320 19 37 chr6 91100389 91100496 -58416541 + PB1D10 SINE Alu 13 117 0 2 1280 27 73 0 0 chr6 91100760 91100815 -58416222 + AT_rich Low_complexity Low_complexity 1 55 0 2 1280 961 207 60 5 chr6 91100815 91101014 -58416023 + B3 SINE B2 2 211 -5 2 1280 1920 100 109 7 chr6 91101065 91101358 -58415679 - ORR1A2 LTR MaLR -4 323 1 2 1280 624 258 23 0 chr6 91101450 91101582 -58415455 + ID_B1 SINE B4 81 215 -9 2 1280 560 281 108 0 chr6 91102179 91102346 -58414691 - MT2A LTR ERVL -119 414 230 2 1280 657 274 52 0 chr6 91102430 91102565 -58414472 + RSINE1 SINE B4 4 145 -20 2 1280 229 313 198 20 chr6 91102694 91102795 -58414242 - MTEa LTR MaLR -260 119 1 2 1280 1034 218 34 34 chr6 91104528 91104737 -58412300 + B3 SINE B2 2 210 -6 2 1280 459 52 0 0 chr6 91105236 91105294 -58411743 + (TTTC)n Simple_repeat Simple_repeat 4 61 0 2 1280 248 372 0 34 chr6 91105989 91106078 -58410959 + RSINE1 SINE B4 43 128 -37 2 1280 398 291 42 48 chr6 91107821 91107987 -58409050 + MER113 DNA MER1_type 207 371 -150 2 1280 432 193 128 72 chr6 91108558 91108753 -58408284 - MER113 DNA MER1_type -59 462 257 2 1280 228 143 0 0 chr6 91109844 91109886 -58407151 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1280 262 209 209 0 chr6 91109932 91109999 -58407038 - ID4_ SINE ID -2 81 1 2 1280 228 156 22 0 chr6 91111067 91111112 -58405925 + (GGGTG)n Simple_repeat Simple_repeat 1 46 0 2 1280 3121 71 15 2 chr6 91111286 91111681 -58405356 - MTB LTR MaLR 0 400 1 2 1280 227 340 105 32 chr6 91112386 91112605 -58404432 - L1MB5 LINE L1 -75 6099 5865 2 1280 510 288 19 6 chr6 91112703 91112864 -58404173 - L1MB5 LINE L1 -350 5824 5662 2 1280 29 0 0 0 chr6 91113186 91113215 -58403822 + AT_rich Low_complexity Low_complexity 1 29 0 2 1280 212 268 117 67 chr6 91113519 91113639 -58403398 - MIR SINE MIR -117 145 20 2 1280 312 320 107 0 chr6 91114051 91114173 -58402864 + MER3 DNA MER1_type 1 135 -74 2 1280 478 217 47 0 chr6 91114186 91114292 -58402745 - PB1D10 SINE Alu 0 117 7 2 1280 362 330 119 0 chr6 91114383 91114577 -58402460 + MER2 DNA MER2_type 76 292 -53 2 1280 499 238 53 8 chr6 91114647 91114778 -58402259 + B1_Mur1 SINE Alu 12 148 -1 2 1280 203 283 19 0 chr6 91116473 91116526 -58400511 - L3 LINE CR1 -118 4371 4318 2 1280 225 65 0 0 chr6 91118616 91118647 -58398390 + (TCCCC)n Simple_repeat Simple_repeat 2 32 0 2 1280 231 133 0 0 chr6 91119622 91119667 -58397370 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1280 1208 197 90 0 chr6 91119719 91119963 -58397074 - MTD LTR MaLR 0 419 154 2 1280 3235 238 172 29 chr6 91119988 91121077 -58395960 - MTC-int LTR MaLR -9 1249 5 2 1280 637 253 12 31 chr6 91121098 91121261 -58395776 + B3A SINE B2 39 198 0 2 1280 324 272 2 30 chr6 91121411 91121515 -58395522 + MTC-int LTR MaLR 632 818 -440 2 1280 240 247 9 147 chr6 91121694 91121803 -58395234 - MTD LTR MaLR -234 125 32 2 1280 919 262 99 91 chr6 91122399 91122752 -58394285 - ORR1E LTR MaLR 0 359 4 2 1280 269 271 19 55 chr6 91124751 91124883 -58392154 - MIRb SINE MIR -114 154 25 2 1280 873 157 0 0 chr6 91125136 91125289 -58391748 + (TA)n Simple_repeat Simple_repeat 2 154 0 2 1280 1832 106 52 16 chr6 91125461 91125767 -58391270 - ORR1A4 LTR MaLR -8 321 5 2 1280 1832 209 66 15 chr6 91125767 91126238 -58390799 - RLTR11A2 LTR ERVK -32 495 1 2 1280 3081 58 48 3 chr6 91126484 91126863 -58390174 - MTA_Mm LTR MaLR 0 396 1 2 1280 783 212 124 20 chr6 91126948 91127150 -58389887 + ID_B1 SINE B4 2 224 0 2 1280 296 260 83 46 chr6 91127168 91127277 -58389760 + B1F SINE Alu 24 136 -13 2 1280 838 20 32 39 chr6 91127283 91127438 -58389599 + (GAGAA)n Simple_repeat Simple_repeat 5 158 0 2 1280 1175 88 0 0 chr6 91128043 91128190 -58388847 - B1_Mm SINE Alu 0 147 1 2 1280 1076 102 0 0 chr6 91129053 91129190 -58387847 - B1_Mus1 SINE Alu -11 137 1 2 1280 247 232 18 0 chr6 91129504 91129560 -58387477 + MIR SINE MIR 89 145 -117 2 1280 1434 232 187 0 chr6 91129841 91130194 -58386843 + MTD LTR MaLR 1 419 0 2 1280 393 368 72 0 chr6 91132120 91132286 -58384751 + MER91B DNA Tip100 5 182 -8 2 1280 1357 111 9 14 chr6 91132576 91132796 -58384241 - URR1B DNA MER1_type 0 225 7 2 1280 188 245 0 102 chr6 91134723 91134782 -58382255 + L2b LINE L2 3303 3355 -20 2 1280 1658 152 24 31 chr6 91135960 91136296 -58380741 + MTC LTR MaLR 37 413 -8 2 1280 297 355 50 14 chr6 91138327 91138467 -58378570 - L2c LINE L2 -227 3160 3016 2 1280 301 326 133 26 chr6 91138620 91138815 -58378222 + MIRb SINE MIR 35 250 -18 2 1280 184 256 0 0 chr6 91138971 91139010 -58378027 + MIRc SINE MIR 113 151 -117 2 1280 292 299 61 20 chr6 91139482 91139581 -58377456 + B4 SINE B4 67 169 -123 2 1280 431 237 0 20 chr6 91139508 91139607 -58377430 + B1_Mur2 SINE Alu 12 108 -41 2 1280 220 263 0 0 chr6 91139718 91139775 -58377262 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1280 1146 328 88 19 chr6 91139894 91140460 -58376577 + Charlie1a DNA MER1_type 611 1215 -240 2 1280 471 35 0 0 chr6 91140462 91140519 -58376518 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 2 1280 1121 232 0 9 chr6 91140520 91140737 -58376300 - ID_B1 SINE B4 -8 216 2 2 1280 836 185 7 19 chr6 91140766 91140920 -58376117 + B3 SINE B2 1 152 -64 2 1280 991 155 55 64 chr6 91140921 91141141 -58375896 + ORR1D1 LTR MaLR 157 374 0 2 1280 243 229 29 0 chr6 91142880 91142950 -58374087 - L2b LINE L2 -251 3124 3053 2 1280 500 279 136 9 chr6 91143832 91144053 -58372984 + L1MB3 LINE L1 5815 6063 -120 2 1280 723 207 142 58 chr6 91144395 91144526 -58372511 - B3 SINE B2 0 216 69 2 1280 1669 171 94 63 chr6 91144526 91144889 -58372148 - ORR1D1 LTR MaLR 0 374 1 2 1280 723 207 142 58 chr6 91144889 91144947 -58372090 - B3 SINE B2 -148 68 11 2 1280 356 318 88 29 chr6 91144979 91144996 -58372041 - B3 SINE B2 0 216 199 2 1280 535 218 137 0 chr6 91144996 91145120 -58371917 + B1_Mur1 SINE Alu 1 141 -8 2 1280 356 318 88 29 chr6 91145120 91145131 -58371906 - B3 SINE B2 -18 198 188 2 1280 644 164 205 0 chr6 91145131 91145253 -58371784 + B1_Mus1 SINE Alu 2 148 0 2 1280 356 318 88 29 chr6 91145253 91145427 -58371610 - B3 SINE B2 -29 187 1 2 1280 227 343 6 6 chr6 91147737 91147904 -58369133 + (CAGTA)n Simple_repeat Simple_repeat 4 170 0 2 1280 299 371 0 0 chr6 91147893 91148115 -58368922 + (CAGAG)n Simple_repeat Simple_repeat 1 222 0 2 1280 247 347 0 12 chr6 91148126 91148385 -58368652 + (TAGTG)n Simple_repeat Simple_repeat 1 255 0 2 1280 305 353 0 0 chr6 91148458 91148631 -58368406 + (AGTAG)n Simple_repeat Simple_repeat 3 175 0 2 1280 278 354 0 0 chr6 91148561 91148736 -58368301 + (TAGTG)n Simple_repeat Simple_repeat 5 179 0 2 1280 210 196 39 0 chr6 91148862 91148913 -58368124 - ID4 SINE ID -13 70 18 2 1280 402 228 0 0 chr6 91149030 91149109 -58367928 - RSINE1 SINE B4 -86 79 1 2 1280 395 214 157 1 chr6 91149602 91149704 -58367333 + B1_Mur4 SINE Alu 2 118 -2 2 1280 207 88 0 0 chr6 91149704 91149738 -58367299 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 1280 218 303 84 10 chr6 91151200 91151330 -58365707 - MIRc SINE MIR -126 142 1 2 1280 185 316 39 39 chr6 91151615 91151717 -58365320 - L2b LINE L2 -214 3161 3060 2 1280 200 345 42 28 chr6 91151844 91151987 -58365050 - L2b LINE L2 -481 2938 2794 2 1280 314 245 163 0 chr6 91151991 91152138 -58364899 + L1M5 LINE L1 5297 5467 -695 2 1280 340 323 94 34 chr6 91153207 91153473 -58363564 + MLT1K LTR MaLR 309 590 -5 2 1280 464 219 187 36 chr6 91153489 91153655 -58363382 + RLTR12B LTR ERVK 38 228 -300 2 1280 453 263 16 111 chr6 91153653 91153897 -58363140 + RLTR12B LTR ERVK 137 357 -171 2 1280 251 298 84 11 chr6 91154542 91154637 -58362400 + L2b LINE L2 3242 3343 -32 2 1280 414 0 0 0 chr6 91154692 91154738 -58362299 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1280 1044 146 88 5 chr6 91156546 91156739 -58360298 + URR1A DNA MER1_type 17 225 -1 2 1280 23 0 0 0 chr6 91156780 91156803 -58360234 + AT_rich Low_complexity Low_complexity 1 23 0 2 1280 390 42 0 0 chr6 91157409 91157457 -58359580 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1280 193 268 0 0 chr6 91157915 91157956 -58359081 + MIRc SINE MIR 117 157 -111 2 1280 241 383 32 0 chr6 91158399 91158553 -58358484 - MLT1K LTR MaLR -363 232 74 2 1280 227 322 110 90 chr6 91159778 91160068 -58356969 - MLT1A1 LTR MaLR -51 357 62 2 1280 202 253 98 54 chr6 91161294 91161386 -58355651 - MIRc SINE MIR -84 184 89 2 1280 201 216 19 19 chr6 91161580 91161632 -58355405 - L2a LINE L2 -342 3084 3033 2 1280 1041 119 0 0 chr6 91162202 91162362 -58354675 + (GGA)n Simple_repeat Simple_repeat 3 162 0 2 1280 587 14 0 14 chr6 91162364 91162437 -58354600 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 2 1280 222 37 0 0 chr6 91163937 91163964 -58353073 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1280 478 205 24 71 chr6 91164107 91164233 -58352804 + MER102b DNA MER1_type 47 166 -175 2 1280 214 224 61 0 chr6 91164860 91164909 -58352128 + L2b LINE L2 3322 3373 -2 2 1280 498 33 0 0 chr6 91165770 91165830 -58351207 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1280 528 246 16 8 chr6 91166130 91166257 -58350780 - B1_Mur1 SINE Alu 0 149 22 3 1280 242 279 103 62 chr6 91167344 91167486 -58349551 - L2b LINE L2 -6 3420 3240 3 1280 203 370 21 52 chr6 91169000 91169191 -58347846 + MIRb SINE MIR 84 268 0 3 1280 216 200 0 0 chr6 91169527 91169572 -58347465 + GA-rich Low_complexity Low_complexity 4 48 0 3 1280 231 295 0 0 chr6 91169695 91169773 -58347264 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 1280 271 416 0 0 chr6 91171665 91171826 -58345211 + (CCTA)n Simple_repeat Simple_repeat 1 161 0 3 1280 409 359 12 6 chr6 91171755 91171972 -58345065 + (CCCA)n Simple_repeat Simple_repeat 1 218 0 3 1280 23 0 0 0 chr6 91173305 91173328 -58343709 + AT_rich Low_complexity Low_complexity 1 23 0 3 1280 369 247 56 11 chr6 91173328 91173418 -58343619 - PB1D10 SINE Alu -23 94 1 3 1280 198 0 0 0 chr6 91173811 91173833 -58343204 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1280 228 261 31 0 chr6 91174054 91174119 -58342918 - Charlie12 DNA MER1_type -2803 70 4 3 1280 180 176 0 0 chr6 91174596 91174630 -58342407 + CT-rich Low_complexity Low_complexity 1 34 0 3 1280 459 0 0 0 chr6 91174634 91174685 -58342352 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 3 1280 415 231 14 28 chr6 91174703 91174822 -58342215 - PB1D10 SINE Alu -20 128 17 3 1280 278 326 42 69 chr6 91175095 91175355 -58341682 + L4 LINE RTE 1697 1949 -80 3 1280 739 299 95 3 chr6 91175357 91175682 -58341355 - L1MB3 LINE L1 -38 6145 5791 3 1280 623 175 7 0 chr6 91175862 91176016 -58341021 + (TG)n Simple_repeat Simple_repeat 1 155 0 3 1280 320 270 7 14 chr6 91176030 91176169 -58340868 + (TG)n Simple_repeat Simple_repeat 1 138 0 3 1280 245 308 44 0 chr6 91176212 91176303 -58340734 + LTR16A1 LTR ERVL 58 152 -304 3 1280 366 264 9 35 chr6 91176598 91176712 -58340325 + B1F2 SINE Alu 39 149 0 3 1280 345 352 86 0 chr6 91177130 91177292 -58339745 - MER53 DNA hAT -16 177 2 3 1280 849 295 147 49 chr6 91177370 91177798 -58339239 + Tigger7 DNA MER2_type 5 474 -2017 3 1280 1123 222 90 4 chr6 91178455 91178722 -58338315 - B4A SINE B4 -2 290 1 3 1280 1071 287 67 56 chr6 91180594 91181113 -58335924 - RMER13A LTR ERVK -70 557 2 3 1280 390 271 8 25 chr6 91181428 91181549 -58335488 + PB1D7 SINE Alu 1 119 -1 3 1280 24 0 0 0 chr6 91181559 91181583 -58335454 + AT_rich Low_complexity Low_complexity 1 24 0 3 1280 627 294 29 48 chr6 91181683 91181890 -58335147 + B4 SINE B4 90 292 0 3 1280 270 0 0 0 chr6 91181935 91181965 -58335072 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1280 413 284 132 13 chr6 91184824 91185059 -58331978 + L2 LINE L2 2815 3077 -342 3 1280 185 188 0 94 chr6 91185246 91185299 -58331738 + L2c LINE L2 3335 3382 -5 3 1280 201 229 0 0 chr6 91185540 91185588 -58331449 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 3 1280 185 382 15 0 chr6 91185937 91186005 -58331032 + MIR SINE MIR 71 139 -123 3 1280 435 38 0 0 chr6 91187555 91187608 -58329429 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1280 441 288 126 18 chr6 91187790 91188013 -58329024 + MER2 DNA MER2_type 99 345 0 3 1280 307 283 21 32 chr6 91188632 91188727 -58328310 - PB1D7 SINE Alu -1 119 26 3 1280 1133 263 126 6 chr6 91188757 91189090 -58327947 - MTD LTR MaLR -46 373 1 3 1280 327 299 41 7 chr6 91189247 91189392 -58327645 - L1MB7 LINE L1 0 6184 6035 3 1280 306 271 22 13 chr6 91190372 91190479 -58326558 + MIRb SINE MIR 60 162 -46 3 1280 316 341 40 9 chr6 91190908 91191072 -58325965 - MIRm SINE MIR -30 238 72 3 1280 264 294 59 0 chr6 91191703 91191788 -58325249 - Charlie8 DNA MER1_type -2281 147 58 3 1280 262 267 102 17 chr6 91192479 91192597 -58324440 + ORR1E LTR MaLR 8 135 -224 3 1280 423 0 0 0 chr6 91193025 91193072 -58323965 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1280 288 0 0 0 chr6 91193072 91193103 -58323934 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1280 396 0 0 0 chr6 91193103 91193146 -58323891 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1280 2585 128 63 10 chr6 91193154 91193550 -58323487 + MTC LTR MaLR 5 421 0 3 1280 641 304 100 61 chr6 91193563 91193892 -58323145 - MER2 DNA MER2_type -1 344 3 3 1280 189 0 0 0 chr6 91193949 91193970 -58323067 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1280 234 0 0 0 chr6 91197222 91197248 -58319789 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1280 196 306 59 0 chr6 91197745 91197830 -58319207 - L2 LINE L2 -337 3082 2993 3 1280 299 25 25 0 chr6 91197859 91197899 -58319138 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1280 262 246 0 42 chr6 91199067 91199139 -58317898 + ORR1E LTR MaLR 1 69 -290 3 1280 842 162 0 6 chr6 91199173 91199334 -58317703 + CT-rich Low_complexity Low_complexity 1 160 0 3 1280 312 250 119 10 chr6 91199334 91199435 -58317602 - PB1D10 SINE Alu -5 112 1 3 1280 325 250 48 9 chr6 91199613 91199718 -58317319 - PB1D10 SINE Alu -8 109 1 3 1280 270 338 26 26 chr6 91199719 91199871 -58317166 - L1M5 LINE L1 -1489 4657 4506 3 1280 846 209 53 0 chr6 91199877 91200064 -58316973 + B3 SINE B2 20 216 0 3 1280 564 116 0 0 chr6 91200551 91200637 -58316400 + (CA)n Simple_repeat Simple_repeat 2 87 0 3 1280 258 421 28 0 chr6 91201329 91201436 -58315601 - MIR3 SINE MIR -85 123 14 3 1280 458 220 6 33 chr6 91201436 91201619 -58315418 + CT-rich Low_complexity Low_complexity 3 180 0 3 1280 825 159 53 0 chr6 91201626 91201758 -58315279 - B1_Mur1 SINE Alu -8 141 3 3 1280 236 299 111 49 chr6 91202947 91203091 -58313946 + MIRc SINE MIR 15 167 -101 3 1280 280 291 142 24 chr6 91203180 91203349 -58313688 - MLT1H LTR MaLR -149 400 212 3 1280 372 253 12 0 chr6 91203637 91203720 -58313317 - MLT1H LTR MaLR -337 212 129 3 1280 372 22 0 0 chr6 91204994 91205039 -58311998 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 3 1280 221 295 13 0 chr6 91206036 91206114 -58310923 + (TCCA)n Simple_repeat Simple_repeat 2 80 0 3 1280 1112 119 6 0 chr6 91207148 91207325 -58309712 + (GGA)n Simple_repeat Simple_repeat 1 178 0 3 1280 216 281 47 0 chr6 91208050 91208114 -58308923 - MER5A DNA MER1_type -1 188 122 3 1280 199 268 80 33 chr6 91210252 91210373 -58306664 + MIR SINE MIR 41 178 -98 3 1280 228 285 14 20 chr6 91211283 91211378 -58305659 + MIRc SINE MIR 87 182 -94 3 1280 286 287 36 65 chr6 91211922 91212112 -58304925 + L2b LINE L2 3023 3214 -173 3 1280 313 305 220 16 chr6 91212743 91213166 -58303871 + L2a LINE L2 2918 3426 0 3 1280 708 132 3 2 chr6 91213456 91213579 -58303458 - RLTR13D3 LTR ERVK -778 124 1 3 1280 186 321 23 23 chr6 91213784 91213870 -58303167 + MIR3 SINE MIR 117 202 -6 3 1280 288 317 39 31 chr6 91214332 91214459 -58302578 + MIR SINE MIR 106 233 -29 3 1280 180 315 25 76 chr6 91214905 91214984 -58302053 + MIRc SINE MIR 112 186 -82 3 1280 387 333 43 0 chr6 91217343 91217505 -58299532 + L2a LINE L2 2938 3106 -320 3 1280 939 229 46 61 chr6 91218112 91218520 -58298517 - RLTRETN_Mm LTR ERVK 0 393 1 3 1280 247 277 123 4 chr6 91218707 91218840 -58298197 + MIRm SINE MIR 31 179 -97 3 1280 1097 277 139 11 chr6 91220226 91220672 -58296365 - RMER5 LTR ERV1 0 534 32 3 1280 305 152 30 0 chr6 91220711 91220777 -58296260 + (CACG)n Simple_repeat Simple_repeat 4 71 0 3 1280 196 200 67 0 chr6 91221329 91221374 -58295663 - MIR SINE MIR -65 143 96 3 1280 864 151 20 40 chr6 91222185 91222337 -58294700 + B1_Mur1 SINE Alu 1 149 0 3 1280 500 167 11 0 chr6 91222340 91222430 -58294607 + B1_Mur1 SINE Alu 59 149 0 3 1280 184 214 0 0 chr6 91222862 91222904 -58294133 - MIR SINE MIR -79 129 88 3 1280 251 279 0 2 chr6 91223030 91223099 -58293938 + PB1 SINE Alu 1 68 -49 3 1280 249 275 116 0 chr6 91223141 91223210 -58293827 + ID4 SINE ID 1 77 -6 3 1280 226 282 124 45 chr6 91223210 91223230 -58293807 + ID_B1 SINE B4 1 96 -128 3 1280 361 131 91 7 chr6 91223319 91223473 -58293564 + (TATAA)n Simple_repeat Simple_repeat 2 168 0 3 1280 385 206 0 0 chr6 91223654 91223727 -58293310 + RSINE1 SINE B4 8 80 -85 3 1280 999 187 8 93 chr6 91223912 91224148 -58292889 + B3 SINE B2 1 216 0 3 1280 333 0 0 0 chr6 91225007 91225044 -58291993 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1280 278 305 0 0 chr6 91225066 91225125 -58291912 - ID4_ SINE ID -16 67 9 3 1280 302 281 112 0 chr6 91225149 91225238 -58291799 - PB1 SINE Alu -18 109 11 3 1280 1331 195 112 10 chr6 91225395 91225700 -58291337 - ORR1D2 LTR MaLR 0 370 35 3 19 724 147 0 14 chr6 91225985 91226123 -58290914 + CT-rich Low_complexity Low_complexity 1 136 0 3 1281 1432 59 16 0 chr6 91226124 91226311 -58290726 - B2_Mm2 SINE B2 -4 191 2 3 1281 317 258 85 11 chr6 91226836 91226930 -58290107 + ID_B1 SINE B4 92 192 -32 3 1281 717 231 51 0 chr6 91228312 91228541 -58288496 + L1MC LINE L1 5181 5422 -922 3 1281 240 312 43 0 chr6 91228564 91228657 -58288380 + Tigger7 DNA MER2_type 10 106 -2385 3 1281 254 147 2 0 chr6 91228786 91228835 -58288202 + B3A SINE B2 6 55 -138 3 1281 738 151 144 0 chr6 91228910 91229049 -58287988 + B3 SINE B2 58 216 0 3 1281 408 257 204 0 chr6 91229269 91229382 -58287655 - ID_B1 SINE B4 -5 219 84 3 1281 401 265 25 33 chr6 91229384 91229505 -58287532 + Tigger7 DNA MER2_type 296 415 -2076 3 1281 456 209 80 58 chr6 91229508 91229645 -58287392 + ORR1D2 LTR MaLR 1 140 -219 3 1281 750 247 39 48 chr6 91229772 91230002 -58287035 + ORR1D2 LTR MaLR 141 368 -2 3 1281 501 323 29 70 chr6 91230186 91230317 -58286720 + Tigger7 DNA MER2_type 2255 2376 -115 3 1281 1004 82 0 75 chr6 91230317 91230476 -58286561 + B1_Mus1 SINE Alu 2 148 0 3 1281 501 323 29 70 chr6 91230476 91230587 -58286450 + Tigger7 DNA MER2_type 2377 2486 -5 3 1281 227 280 67 0 chr6 91232706 91232781 -58284256 + L2b LINE L2 3295 3374 -1 4 1281 279 363 8 0 chr6 91235864 91235988 -58281049 + MIR SINE MIR 50 174 -88 4 1281 196 300 0 0 chr6 91238578 91238628 -58278409 + L3 LINE CR1 4351 4400 -89 4 1281 292 306 184 58 chr6 91238709 91239018 -58278019 - MLT1J LTR MaLR 0 512 165 4 1281 270 304 234 5 chr6 91239629 91239821 -58277216 - L2a LINE L2 -262 3164 2929 4 1281 220 160 39 20 chr6 91240942 91240993 -58276044 - MIR SINE MIR -90 118 67 4 1281 268 174 90 6 chr6 91241738 91241832 -58275205 + MIRc SINE MIR 113 223 -45 4 1281 406 330 0 11 chr6 91243022 91243203 -58273834 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 4 1281 265 214 35 18 chr6 91243697 91243811 -58273226 + CT-rich Low_complexity Low_complexity 3 118 0 4 1281 264 206 59 98 chr6 91243829 91243931 -58273106 - PB1D7 SINE Alu 0 120 23 4 1281 213 261 101 0 chr6 91245425 91245494 -58271543 + MIRm SINE MIR 49 124 -152 4 1281 184 303 85 53 chr6 91245594 91245688 -58271349 - MIRm SINE MIR -3 273 177 4 1281 233 267 151 0 chr6 91245832 91245918 -58271119 + MLT1J LTR MaLR 80 178 -334 4 1281 189 0 0 0 chr6 91245974 91245995 -58271042 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1281 292 318 118 63 chr6 91245995 91246233 -58270804 + MLT1J LTR MaLR 229 479 -33 4 1281 323 328 59 51 chr6 91248036 91248290 -58268747 - MLT1L LTR MaLR -135 475 220 4 1281 259 235 0 0 chr6 91250105 91250156 -58266881 + MIRc SINE MIR 77 127 -141 4 1281 239 330 27 36 chr6 91252604 91252714 -58264323 - MLT1B LTR MaLR -57 333 225 4 1281 263 282 35 12 chr6 91252726 91252812 -58264225 - MLT1B LTR MaLR -232 158 71 4 1281 398 363 38 21 chr6 91253192 91253378 -58263659 - LTR16E1 LTR ERVL -59 479 291 4 1281 551 354 164 29 chr6 91254615 91255146 -58261891 + MLT1J1-int LTR MaLR 542 1156 -231 4 1281 366 23 0 0 chr6 91255146 91255189 -58261848 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1281 450 0 0 0 chr6 91255189 91255238 -58261799 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1281 551 354 164 29 chr6 91255238 91255296 -58261741 + MLT1J1-int LTR MaLR 1157 1211 -176 4 1281 384 71 0 0 chr6 91255342 91255398 -58261639 + (TCTG)n Simple_repeat Simple_repeat 3 58 0 4 1281 248 309 175 51 chr6 91255531 91255708 -58261329 + MLT1J1 LTR MaLR 110 308 -136 4 1281 975 133 0 0 chr6 91255914 91256064 -58260973 + B1_Mur4 SINE Alu 1 150 0 4 1281 411 113 0 0 chr6 91256064 91256126 -58260911 + (A)n Simple_repeat Simple_repeat 1 62 0 4 1281 2634 241 109 16 chr6 91256126 91256945 -58260092 - RCHARR1 DNA MER1_type -79 895 1 4 1281 397 245 26 35 chr6 91257221 91257335 -58259702 - MLT1A1 LTR MaLR -4 404 292 4 1281 322 293 104 46 chr6 91258004 91258244 -58258793 - MLT1A1 LTR MaLR -162 282 63 4 1281 276 30 0 0 chr6 91258427 91258460 -58258577 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1281 318 50 0 0 chr6 91258464 91258504 -58258533 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1281 233 278 181 8 chr6 91258897 91259024 -58258013 - MIR SINE MIR -113 149 1 4 1281 2670 132 113 40 chr6 91260599 91260732 -58256305 - RMER1A Other Other -1 1029 878 4 1281 561 55 0 0 chr6 91260732 91260805 -58256232 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1281 2670 132 113 40 chr6 91260805 91261191 -58255846 - RMER1A Other Other -153 877 473 4 1281 21 57 0 0 chr6 91261535 91261570 -58255467 + AT_rich Low_complexity Low_complexity 1 35 0 4 1281 628 306 37 0 chr6 91262662 91262907 -58254130 - L1MDa LINE L1 -3480 3057 2804 4 1281 715 241 34 6 chr6 91263022 91263197 -58253840 - B3A SINE B2 -15 183 4 4 1281 672 271 25 45 chr6 91263248 91263449 -58253588 + ORR1E LTR MaLR 1 197 -162 4 1281 1122 308 92 25 chr6 91263485 91264048 -58252989 - L1M2 LINE L1 -1993 4150 3550 4 1281 777 288 11 0 chr6 91264088 91264272 -58252765 + B4A SINE B4 50 235 -57 4 1281 963 228 152 22 chr6 91264275 91264768 -58252269 - L1M2 LINE L1 -2586 3557 3001 4 1281 603 252 35 102 chr6 91265035 91265394 -58251643 - L1MDa LINE L1 -3823 2714 2370 4 1281 261 0 0 0 chr6 91265394 91265423 -58251614 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1281 603 248 34 123 chr6 91265423 91265572 -58251465 - L1MDa LINE L1 -4264 2369 2249 4 1281 797 258 14 27 chr6 91265572 91265791 -58251246 - B3 SINE B2 0 216 1 4 1281 603 248 34 123 chr6 91265791 91265892 -58251145 - L1MDa LINE L1 -4385 2248 2151 4 1281 929 292 85 4 chr6 91265913 91266171 -58250866 + MTD LTR MaLR 127 405 -14 4 1281 278 328 29 29 chr6 91266183 91266321 -58250716 - L1MDa LINE L1 -6400 233 96 4 1281 547 273 213 35 chr6 91266553 91267046 -58249991 - L1M4c LINE L1 -3263 3119 2539 4 1281 837 83 8 0 chr6 91267051 91267171 -58249866 - B1_Mus1 SINE Alu 0 148 28 4 1281 207 0 0 0 chr6 91267304 91267327 -58249710 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1281 587 271 54 10 chr6 91267499 91267680 -58249357 - B3 SINE B2 -8 208 21 4 1281 210 273 18 0 chr6 91267772 91267827 -58249210 + ID4_ SINE ID 28 83 0 4 1281 571 302 122 44 chr6 91267865 91268791 -58248246 - L1M4c LINE L1 -4564 1820 823 4 1281 604 194 19 0 chr6 91269036 91269144 -58247893 + PB1D10 SINE Alu 1 110 -7 4 1281 201 74 0 0 chr6 91269970 91269997 -58247040 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1281 480 148 143 34 chr6 91270075 91270194 -58246843 + RLTR11A2 LTR ERVK 16 147 -380 4 1281 416 19 0 19 chr6 91270208 91270262 -58246775 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1281 39 22 0 0 chr6 91271070 91271116 -58245921 + AT_rich Low_complexity Low_complexity 1 46 0 4 1281 900 233 40 25 chr6 91271116 91271314 -58245723 - B3 SINE B2 -14 202 2 4 1281 264 185 0 0 chr6 91271323 91271377 -58245660 + CT-rich Low_complexity Low_complexity 3 56 0 4 1281 252 0 0 0 chr6 91271377 91271405 -58245632 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1281 795 233 58 0 chr6 91271417 91271589 -58245448 - B3A SINE B2 -16 182 1 4 1281 539 323 88 36 chr6 91271611 91271916 -58245121 - MER2 DNA MER2_type -1 344 24 4 1281 273 319 76 7 chr6 91272365 91272510 -58244527 - MER2 DNA MER2_type -77 268 114 4 1281 362 235 49 0 chr6 91272507 91272588 -58244449 - MER2 DNA MER2_type -174 171 87 4 1281 318 106 0 0 chr6 91274269 91274316 -58242721 + (CACG)n Simple_repeat Simple_repeat 1 47 0 4 1281 546 289 58 24 chr6 91275485 91275691 -58241346 + L2a LINE L2 3189 3401 -25 4 1281 302 236 144 11 chr6 91276415 91276505 -58240532 + MLT1A1 LTR MaLR 305 406 -2 4 1281 261 0 0 0 chr6 91276521 91276550 -58240487 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1281 263 317 0 0 chr6 91276871 91276964 -58240073 + MIR SINE MIR 71 163 -105 4 1281 271 221 81 40 chr6 91276974 91277073 -58239964 - LTR31 LTR ERV1 -71 548 446 4 1281 1262 279 149 20 chr6 91278571 91278682 -58238355 - L1MB8 LINE L1 -136 6042 5902 4 1281 333 118 0 0 chr6 91278682 91278733 -58238304 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1281 1262 301 147 27 chr6 91278733 91280107 -58236930 - L1MB8 LINE L1 -277 5901 4354 4 1281 439 356 111 32 chr6 91280308 91280688 -58236349 - L1M5 LINE L1 -1502 4644 4235 4 1281 196 387 31 43 chr6 91281795 91281957 -58235080 - MIRb SINE MIR -74 194 35 4 1281 410 356 54 25 chr6 91282695 91282934 -58234103 + MLT1L LTR MaLR 144 389 -221 4 1281 889 260 199 26 chr6 91283013 91283364 -58233673 + MTD LTR MaLR 3 404 -17 4 1281 667 92 0 18 chr6 91287409 91287520 -58229517 + (TTCC)n Simple_repeat Simple_repeat 2 110 0 4 1281 190 266 165 0 chr6 91287797 91287876 -58229161 + L2a LINE L2 2861 2952 -467 4 1281 289 289 83 21 chr6 91287908 91288053 -58228984 + L2a LINE L2 3051 3204 -222 4 1281 726 47 0 98 chr6 91289309 91289452 -58227585 + (TC)n Simple_repeat Simple_repeat 2 130 0 4 1281 325 288 61 67 chr6 91290367 91290531 -58226506 + MER47A DNA MER2_type 29 191 -175 4 1281 287 286 26 35 chr6 91290534 91290650 -58226387 - ORR1E LTR MaLR -194 165 51 4 1281 2730 268 128 19 chr6 91290665 91291564 -58225473 - MTE-int LTR MaLR -42 1538 542 4 1281 401 235 7 33 chr6 91291617 91291765 -58225272 + MTEb LTR MaLR 186 330 -49 4 1281 518 232 166 54 chr6 91291778 91291955 -58225082 + MTE-int LTR MaLR 229 433 -1147 4 1281 3869 7 121 0 chr6 91291955 91292395 -58224642 + MT2_Mm LTR ERVL 1 493 0 4 1281 518 232 166 54 chr6 91292395 91292422 -58224615 + MTE-int LTR MaLR 434 456 -1124 4 1281 531 306 6 36 chr6 91292588 91292754 -58224283 + Tigger5 DNA MER2_type 2 162 -2244 4 1281 234 0 0 0 chr6 91294910 91294936 -58222101 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1281 283 349 28 0 chr6 91295681 91295790 -58221247 + ORR1D1 LTR MaLR 261 372 -2 4 1281 189 273 75 15 chr6 91297138 91297205 -58219832 - MIRc SINE MIR -123 145 75 4 1281 387 105 0 0 chr6 91298135 91298192 -58218845 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 4 1281 345 285 141 88 chr6 91298969 91299196 -58217841 + MIR SINE MIR 12 250 -12 4 1281 1404 190 28 39 chr6 91300479 91300962 -58216075 - ORR1B2 LTR MaLR -3 418 1 4 1281 204 125 0 0 chr6 91301068 91301100 -58215937 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1281 1713 236 33 3 chr6 91301103 91301468 -58215569 - Lx6 LINE L1 -2 7458 7083 4 1281 501 17 0 0 chr6 91301472 91301530 -58215507 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1281 7641 184 35 18 chr6 91301538 91303789 -58213248 - Lx6 LINE L1 -751 6709 4399 4 1281 384 281 16 55 chr6 91303911 91303991 -58213046 + ID_B1 SINE B4 81 155 -69 4 1281 1735 163 143 0 chr6 91303991 91304340 -58212697 + MTC LTR MaLR 3 401 -20 4 1281 315 310 78 0 chr6 91304350 91304479 -58212558 + L1MEg LINE L1 1804 1942 -4142 4 1281 465 320 202 8 chr6 91305423 91305795 -58211242 + L1MA4 LINE L1 5484 5927 -373 4 1281 604 323 67 19 chr6 91305913 91306067 -58210970 + MLT1D LTR MaLR 225 382 -123 4 1281 5024 141 82 19 chr6 91306067 91306915 -58210122 - RMER19B LTR ERVK 0 902 1 4 1281 604 323 67 19 chr6 91306915 91307028 -58210009 + MLT1D LTR MaLR 383 505 0 4 1281 259 290 16 1 chr6 91307072 91307154 -58209883 + MIR SINE MIR 68 161 -107 4 1281 279 272 12 58 chr6 91307154 91307240 -58209797 + ID4_ SINE ID 2 83 0 4 1281 244 299 50 20 chr6 91307240 91307256 -58209781 + MIRb SINE MIR 162 176 -92 4 1281 392 0 21 0 chr6 91310962 91311010 -58206027 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1281 312 290 167 9 chr6 91311543 91311651 -58205386 - MIR SINE MIR -119 143 19 4 1281 207 0 0 0 chr6 91311653 91311676 -58205361 + (CTTA)n Simple_repeat Simple_repeat 1 23 0 4 1281 482 196 88 0 chr6 91311689 91311791 -58205246 - ID_B1 SINE B4 0 224 114 4 1281 340 223 205 8 chr6 91311791 91311811 -58205226 - B1F1 SINE Alu -1 148 3 4 1281 554 307 73 32 chr6 91312123 91312342 -58204695 + MTE2a LTR MaLR 152 379 0 4 1281 290 232 29 0 chr6 91313270 91313339 -58203698 - MIRb SINE MIR -80 188 118 5 1281 200 263 0 13 chr6 91313837 91313914 -58203123 + (TCCA)n Simple_repeat Simple_repeat 3 78 0 5 1281 201 156 0 0 chr6 91315269 91315301 -58201736 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 5 1281 24 0 0 0 chr6 91315499 91315523 -58201514 + AT_rich Low_complexity Low_complexity 1 24 0 5 1281 405 0 0 0 chr6 91319191 91319236 -58197801 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1281 214 319 0 65 chr6 91319263 91319276 -58197761 + B4A SINE B4 78 85 -207 5 1281 271 271 210 40 chr6 91319276 91319376 -58197661 + B1F1 SINE Alu 1 117 0 5 1281 181 260 20 20 chr6 91319789 91319840 -58197197 + L3 LINE CR1 4332 4382 -107 5 1281 297 0 0 0 chr6 91321285 91321318 -58195719 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1281 1158 42 0 0 chr6 91321318 91321461 -58195576 + (GA)n Simple_repeat Simple_repeat 1 144 0 5 1281 330 332 71 33 chr6 91321543 91321755 -58195282 + B4A SINE B4 1 220 -72 5 1281 183 80 0 0 chr6 91321859 91321884 -58195153 + (CCA)n Simple_repeat Simple_repeat 2 26 0 5 1281 388 228 0 16 chr6 91322114 91322297 -58194740 + CT-rich Low_complexity Low_complexity 1 180 0 5 1281 350 209 11 23 chr6 91322332 91322508 -58194529 + CT-rich Low_complexity Low_complexity 2 175 0 5 1281 644 152 0 0 chr6 91323268 91323373 -58193664 - B1_Mus2 SINE Alu -21 126 22 5 1281 213 39 0 0 chr6 91323373 91323399 -58193638 + (CCA)n Simple_repeat Simple_repeat 1 26 0 5 1281 420 111 0 0 chr6 91323433 91323496 -58193541 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1281 374 235 0 0 chr6 91324170 91324238 -58192799 + ID4 SINE ID 5 72 -11 5 1281 495 0 0 0 chr6 91324276 91324331 -58192706 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1281 279 0 0 0 chr6 91324331 91324361 -58192676 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1281 430 254 97 21 chr6 91325621 91325682 -58191355 + L1MB8 LINE L1 5836 5897 -281 5 1281 1012 40 33 0 chr6 91325682 91325832 -58191205 + (CA)n Simple_repeat Simple_repeat 2 156 0 5 1281 430 260 95 19 chr6 91325832 91325932 -58191105 + L1MB8 LINE L1 5898 6008 -176 5 1281 366 261 33 0 chr6 91325957 91326049 -58190988 - PB1D10 SINE Alu 0 117 23 5 1281 235 314 104 28 chr6 91326511 91326618 -58190419 - L2c LINE L2 -25 3350 3238 5 1281 309 328 72 14 chr6 91327822 91327961 -58189076 + MIR SINE MIR 51 197 -65 5 1281 448 213 0 21 chr6 91328285 91328381 -58188656 - BC1_Mm scRNA scRNA -53 99 6 5 1281 624 285 101 79 chr6 91328491 91328857 -58188180 - MLT1A LTR MaLR 0 374 1 5 1281 563 300 158 11 chr6 91329748 91330014 -58187023 + L2a LINE L2 3122 3426 0 5 1281 180 125 0 0 chr6 91330144 91330176 -58186861 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 5 1281 180 0 0 0 chr6 91330204 91330224 -58186813 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1281 324 313 19 11 chr6 91330242 91330507 -58186530 + (TCCA)n Simple_repeat Simple_repeat 1 267 0 5 1281 235 326 111 58 chr6 91330556 91330764 -58186273 + L2c LINE L2 3162 3380 -7 5 1281 482 324 106 5 chr6 91330939 91331156 -58185881 + MIR SINE MIR 3 241 -21 5 1281 611 309 75 24 chr6 91331321 91331765 -58185272 - L2a LINE L2 -165 3261 2799 5 1281 478 231 47 28 chr6 91332517 91332624 -58184413 + PB1D9 SINE Alu 1 109 -11 5 1281 272 306 90 0 chr6 91332846 91332957 -58184080 - MIRc SINE MIR -133 135 15 5 1281 305 323 131 0 chr6 91334233 91334363 -58182674 + MER3 DNA MER1_type 60 206 -3 5 1281 267 309 86 62 chr6 91334984 91335181 -58181856 + MIR SINE MIR 5 195 -73 5 1281 270 290 79 24 chr6 91336038 91336165 -58180872 + L1MB1 LINE L1 5883 6016 -173 5 1281 236 273 93 71 chr6 91336811 91336839 -58180198 + L1MD2 LINE L1 4992 5017 -1129 5 1281 363 290 19 0 chr6 91336839 91336946 -58180091 - PB1D10 SINE Alu -6 111 3 5 1281 236 273 93 71 chr6 91336946 91337228 -58179809 + L1MD2 LINE L1 5018 5309 -837 5 1281 229 290 97 0 chr6 91337306 91337451 -58179586 + L1MD2 LINE L1 5357 5515 -844 5 1281 766 332 30 6 chr6 91337902 91338238 -58178799 + L1MD2 LINE L1 5632 5975 -384 5 1281 316 319 33 71 chr6 91338280 91338462 -58178575 + L1MD2 LINE L1 6067 6241 -1 5 1281 414 236 98 21 chr6 91338471 91338614 -58178423 + MER53 DNA hAT 40 193 0 5 1281 395 262 138 58 chr6 91338643 91338817 -58178220 - L2a LINE L2 0 3426 3239 5 1281 1222 91 51 0 chr6 91341353 91341529 -58175508 + ORR1C2 LTR MaLR 1 185 -199 5 1281 757 134 13 0 chr6 91341529 91341678 -58175359 + (TC)n Simple_repeat Simple_repeat 2 152 0 5 1281 517 216 178 107 chr6 91341681 91341726 -58175311 + ORR1C2 LTR MaLR 164 194 -180 5 1281 443 18 0 18 chr6 91341726 91341783 -58175254 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1281 724 190 25 21 chr6 91341783 91341934 -58175103 + ORR1C2 LTR MaLR 195 378 0 5 1281 280 301 182 7 chr6 91343222 91343359 -58173678 + MIR SINE MIR 21 181 -81 5 1281 204 261 28 42 chr6 91345278 91345350 -58171687 + MIRm SINE MIR 106 176 -100 5 1281 289 321 136 24 chr6 91345682 91345851 -58171186 + MIRb SINE MIR 44 231 -37 5 1281 305 271 110 60 chr6 91346074 91346274 -58170763 + MIR SINE MIR 30 239 -29 5 1281 218 156 0 0 chr6 91346550 91346582 -58170455 + (CCCCAG)n Simple_repeat Simple_repeat 1 32 0 5 1281 188 295 15 62 chr6 91346986 91347051 -58169986 + MIRm SINE MIR 85 146 -130 5 1281 1000 168 121 0 chr6 91347421 91347611 -58169426 + B3 SINE B2 4 216 0 5 1281 217 174 0 0 chr6 91347651 91347690 -58169347 - MIRc SINE MIR -56 152 114 5 1281 5964 21 9 0 chr6 91348466 91349144 -58167893 + L1Md_F3 LINE L1 5887 6570 -14 5 1281 335 164 0 0 chr6 91349613 91349668 -58167369 - L2b LINE L2 -10 3365 3311 5 1281 486 96 0 0 chr6 91351474 91351547 -58165490 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1281 467 238 47 99 chr6 91351590 91351781 -58165256 + L3 LINE CR1 2637 2817 -1672 5 1281 574 284 77 35 chr6 91352278 91352370 -58164667 + ID_B1 SINE B4 49 213 -79 5 1281 271 253 35 92 chr6 91352370 91352457 -58164580 + B1_Mur1 SINE Alu 68 149 0 5 1281 574 284 77 35 chr6 91352457 91352487 -58164550 + ID_B1 SINE B4 214 271 -21 5 1281 273 277 0 0 chr6 91354668 91354733 -58162304 + ID4_ SINE ID 19 83 0 5 1281 760 256 114 52 chr6 91355059 91355484 -58161553 + MLT1B LTR MaLR 1 442 -25 5 1281 584 298 1 20 chr6 91356022 91356195 -58160842 + MLT1J LTR MaLR 57 214 -298 5 1281 217 73 167 24 chr6 91356883 91356925 -58160112 + MIRc SINE MIR 94 141 -127 5 160 314 58 0 37 chr6 91357141 91357195 -58159842 + (CAAAA)n Simple_repeat Simple_repeat 1 52 0 5 1282 278 329 117 59 chr6 91358175 91358435 -58158602 - MER102c DNA MER1_type -17 314 59 5 1282 213 39 0 0 chr6 91359825 91359851 -58157186 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 5 1282 208 219 0 52 chr6 91361376 91361453 -58155584 + C-rich Low_complexity Low_complexity 6 78 0 5 1282 246 306 123 26 chr6 91361982 91362096 -58154941 - MIR3 SINE MIR -69 139 15 5 1282 254 287 69 0 chr6 91362864 91362965 -58154072 - B1F1 SINE Alu -41 108 1 5 1282 603 294 12 6 chr6 91362965 91363046 -58153991 - ID SINE ID -142 82 1 5 1282 251 333 63 31 chr6 91363051 91363178 -58153859 + MLT1G3 LTR MaLR 3 133 -458 5 1282 341 307 161 28 chr6 91363195 91363404 -58153633 + MLT1G3 LTR MaLR 221 463 -132 5 1282 302 318 76 43 chr6 91363901 91364085 -58152952 - MIR SINE MIR -40 222 33 5 1282 333 68 0 0 chr6 91364103 91364147 -58152890 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1282 229 384 0 0 chr6 91364659 91364732 -58152305 + MIRm SINE MIR 12 84 -192 5 1282 304 280 39 78 chr6 91365091 91365219 -58151818 + B4A SINE B4 164 286 -6 5 1282 261 0 0 0 chr6 91365263 91365292 -58151745 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1282 387 247 136 106 chr6 91365916 91366238 -58150799 - ORR1E LTR MaLR -22 337 6 5 1282 841 181 39 6 chr6 91366894 91367050 -58149987 + MT2A LTR ERVL 5 165 -368 5 1282 258 263 0 62 chr6 91368005 91368086 -58148951 + polypyrimidine Low_complexity Low_complexity 1 76 0 5 1282 2353 280 63 19 chr6 91368278 91369098 -58147939 - Lx8 LINE L1 -37 7436 6581 5 1282 2803 249 131 29 chr6 91369124 91369295 -58147742 + L1_Mur3 LINE L1 2867 3048 -2832 5 1282 961 101 60 77 chr6 91369295 91369477 -58147560 - B2_Mm2 SINE B2 -15 180 2 5 1282 2803 249 131 29 chr6 91369477 91369650 -58147387 + L1_Mur3 LINE L1 3049 3244 -2636 5 1282 1190 202 0 0 chr6 91369650 91369858 -58147179 + B3 SINE B2 2 209 -7 5 1282 2803 249 131 29 chr6 91369858 91370722 -58146315 + L1_Mur3 LINE L1 3245 4200 -1680 5 1282 223 281 104 9 chr6 91370860 91370975 -58146062 + L2c LINE L2 3000 3126 -249 5 1282 915 310 69 51 chr6 91372350 91373121 -58143916 - L1M2 LINE L1 -3077 3066 2282 5 1282 237 319 129 20 chr6 91373152 91373205 -58143832 - RSINE1 SINE B4 0 165 3 5 1282 484 234 0 0 chr6 91373205 91373299 -58143738 - B3A SINE B2 -103 95 2 5 1282 747 62 0 0 chr6 91373343 91373440 -58143597 + (TC)n Simple_repeat Simple_repeat 2 98 0 5 1282 550 317 28 14 chr6 91373453 91373597 -58143440 - B4 SINE B4 0 292 147 5 1282 481 257 20 67 chr6 91373610 91373760 -58143277 - B1F SINE Alu -2 147 5 5 1282 1472 106 88 16 chr6 91373945 91374195 -58142842 + RMER6B LTR ERVK 1 268 -193 5 1282 671 230 14 0 chr6 91374506 91374645 -58142392 + ID_B1 SINE B4 84 224 0 5 1282 566 321 70 39 chr6 91374773 91375345 -58141692 - L1MC3 LINE L1 -1628 6157 5566 5 1282 295 333 132 0 chr6 91375495 91375609 -58141428 - ID_B1 SINE B4 0 224 96 5 1282 1505 53 32 63 chr6 91375615 91375836 -58141201 + L1Md_F3 LINE L1 6371 6584 0 5 1282 1563 52 5 10 chr6 91375844 91376037 -58141000 + B2_Mm1a SINE B2 2 193 0 5 1282 337 143 111 14 chr6 91376414 91376499 -58140538 - B1F SINE Alu 0 149 54 5 1282 827 220 115 0 chr6 91376694 91376885 -58140152 - B3 SINE B2 -3 213 1 5 1282 3724 79 6 10 chr6 91377128 91377632 -58139405 - RLTR1C LTR ERV1 0 628 1 5 1282 335 284 47 0 chr6 91377697 91377824 -58139213 - L1MB3 LINE L1 -290 5893 5761 5 1282 213 39 0 0 chr6 91377862 91377888 -58139149 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 6 1282 24 0 0 0 chr6 91380770 91380794 -58136243 + AT_rich Low_complexity Low_complexity 1 24 0 6 1282 668 253 45 15 chr6 91381173 91381374 -58135663 + B3 SINE B2 5 211 -5 6 1282 324 234 48 34 chr6 91381569 91381715 -58135322 - RMER17D LTR ERVK -388 501 354 6 1282 1244 165 38 63 chr6 91381942 91382312 -58134725 + RMER6A LTR ERVK 120 451 -305 6 1282 314 232 3 29 chr6 91383126 91383152 -58133885 + B4 SINE B4 63 87 -205 6 1282 398 183 0 0 chr6 91383152 91383212 -58133825 + B1_Mus1 SINE Alu 4 63 -85 6 1282 206 159 0 22 chr6 91383708 91383753 -58133284 + (CAA)n Simple_repeat Simple_repeat 3 46 0 6 1282 580 329 41 26 chr6 91383791 91384134 -58132903 + L1M2 LINE L1 4914 5261 -882 6 1282 273 151 0 47 chr6 91384376 91384476 -58132561 - B2_Mm2 SINE B2 -2 193 47 6 1282 1281 102 11 0 chr6 91384489 91384666 -58132371 - B2_Mm1a SINE B2 -14 179 1 6 1282 307 317 98 127 chr6 91384666 91385045 -58131992 - MLT1A1 LTR MaLR -38 370 3 6 1282 1411 194 261 16 chr6 91385103 91385197 -58131840 - RLTR20C LTR ERVK 0 534 446 6 1282 465 19 0 0 chr6 91385197 91385251 -58131786 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1282 1411 194 261 16 chr6 91385251 91385585 -58131452 - RLTR20C LTR ERVK -89 445 3 6 1282 719 285 104 45 chr6 91386400 91387003 -58130034 - L1MC LINE L1 -757 5389 4751 6 1282 233 179 36 0 chr6 91387402 91387458 -58129579 - L1MD LINE L1 -1934 4212 4155 6 1282 926 145 0 6 chr6 91387630 91387797 -58129240 + GA-rich Low_complexity Low_complexity 1 166 0 6 1282 485 312 77 54 chr6 91387816 91388168 -58128869 - L1MC LINE L1 -1999 4147 3788 6 1282 526 278 89 36 chr6 91388173 91388453 -58128584 - L1MC LINE L1 -2468 3678 3384 6 1282 311 322 34 10 chr6 91389091 91389295 -58127742 - L1MC LINE L1 -2970 3176 2968 6 1282 271 212 15 29 chr6 91389355 91389423 -58127614 - ID4_ SINE ID -16 67 1 6 1282 232 183 83 0 chr6 91390674 91390734 -58126303 + L1_Rod LINE L1 5159 5223 -624 6 1282 230 83 51 24 chr6 91392534 91392583 -58124454 + PB1D7 SINE Alu 79 149 0 6 1282 252 250 14 14 chr6 91392596 91392665 -58124372 + ID4 SINE ID 2 70 -13 6 1282 2354 140 52 32 chr6 91393393 91393800 -58123237 - RMER19C LTR ERVK 0 611 197 6 1282 3600 66 0 28 chr6 91393814 91394314 -58122723 - L1Md_F2 LINE L1 -23 6559 6074 6 1282 567 172 33 94 chr6 91394314 91394463 -58122574 - RMER19C LTR ERVK -395 216 1 6 1282 180 0 0 0 chr6 91396371 91396391 -58120646 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1282 1020 68 8 0 chr6 91396397 91396529 -58120508 - B1_Mus1 SINE Alu -1 147 15 6 1282 498 327 104 44 chr6 91397077 91397848 -58119189 + L1M3 LINE L1 3031 3847 -2296 6 1282 295 109 62 0 chr6 91397855 91397919 -58119118 + (CAGAGA)n Simple_repeat Simple_repeat 2 69 0 6 1282 415 244 44 0 chr6 91398052 91398142 -58118895 + RSINE1 SINE B4 67 160 -5 6 1282 460 268 122 45 chr6 91398493 91398797 -58118240 - ORR1E LTR MaLR 0 379 1 6 1282 618 14 0 0 chr6 91399129 91399200 -58117837 + (TTTCC)n Simple_repeat Simple_repeat 3 73 0 6 1282 307 256 104 87 chr6 91399310 91399541 -58117496 - L1MC5 LINE L1 -210 7751 7517 6 1282 27 0 0 0 chr6 91399545 91399572 -58117465 + AT_rich Low_complexity Low_complexity 1 27 0 6 1282 293 68 23 0 chr6 91399584 91399628 -58117409 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1282 335 325 151 0 chr6 91399631 91399757 -58117280 - RSINE1 SINE B4 -17 148 4 6 1282 478 299 8 0 chr6 91399812 91399939 -58117098 + MTEa LTR MaLR 13 140 -239 6 1282 680 312 68 18 chr6 91399939 91400272 -58116765 + MT2A LTR ERVL 11 532 -1 6 1282 518 29 0 14 chr6 91400486 91400555 -58116482 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 6 1282 1964 186 84 31 chr6 91400702 91401213 -58115824 + MYSERV-int LTR ERVK 5992 6529 -21 6 1282 724 266 93 96 chr6 91401223 91401728 -58115309 + RLTR12B LTR ERVK 3 512 -15 6 1282 246 189 132 0 chr6 91401857 91401910 -58115127 + B4 SINE B4 3 62 -230 6 1282 351 0 0 0 chr6 91402569 91402608 -58114429 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1282 485 258 68 74 chr6 91402641 91402804 -58114233 + B4 SINE B4 123 284 -8 6 1282 311 272 155 52 chr6 91403399 91403593 -58113444 - RLTR12B LTR ERVK -68 460 247 6 1282 2020 200 59 60 chr6 91403957 91404520 -58112517 + RLTR12A LTR ERVK 1 562 -6 6 1282 2359 93 24 37 chr6 91404884 91405247 -58111790 - RMER6A LTR ERVK 0 756 398 6 1282 4926 50 3 5 chr6 91405247 91405835 -58111202 - LTRIS_Mus LTR ERV1 0 587 1 6 1282 2359 93 24 37 chr6 91405835 91405851 -58111186 - RMER6A LTR ERVK -359 397 382 6 1282 2003 129 108 54 chr6 91405851 91406221 -58110816 - RLTR19 LTR ERVK -7 492 103 6 1282 1783 139 74 41 chr6 91406928 91407295 -58109742 + IAPLTR2a LTR ERVK 1 379 -32 6 1282 775 99 0 18 chr6 91407283 91407396 -58109641 - RLTR19 LTR ERVK -388 111 1 6 1282 1355 114 5 23 chr6 91407398 91407614 -58109423 - RMER6A LTR ERVK -436 320 109 6 1282 349 226 271 9 chr6 91407649 91407756 -58109281 + RSINE1 SINE B4 3 137 -28 6 1282 234 295 83 67 chr6 91407756 91407769 -58109268 + B2_Mm1a SINE B2 2 123 -70 6 1282 603 266 141 23 chr6 91407798 91407975 -58109062 - B3A SINE B2 0 198 1 6 1282 409 235 0 36 chr6 91408040 91408124 -58108913 + B3 SINE B2 2 82 -134 6 1282 1335 62 80 0 chr6 91408790 91408966 -58108071 + B2_Mm2 SINE B2 3 192 -3 6 1282 1221 61 0 0 chr6 91409070 91409217 -58107820 + B1_Mus1 SINE Alu 2 148 0 6 1282 237 33 0 0 chr6 91409280 91409310 -58107727 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1282 322 288 0 36 chr6 91409368 91409451 -58107586 - RMER6B LTR ERVK -14 447 368 6 1282 297 0 0 0 chr6 91409593 91409626 -58107411 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1282 4102 204 54 21 chr6 91410012 91410922 -58106115 + Lx5 LINE L1 6089 7050 0 6 1282 364 157 183 19 chr6 91410932 91411036 -58106001 + B1_Mur2 SINE Alu 29 149 0 6 1282 723 229 24 99 chr6 91411057 91411270 -58105767 - B3A SINE B2 -1 197 1 6 1282 297 0 0 0 chr6 91411283 91411316 -58105721 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1282 470 200 30 104 chr6 91411576 91411710 -58105327 + ORR1E LTR MaLR 10 133 -226 6 1282 429 258 97 15 chr6 91411792 91411926 -58105111 + B1F SINE Alu 3 147 -2 6 1282 713 263 16 81 chr6 91412118 91412304 -58104733 + B3 SINE B2 1 174 -42 6 1282 609 232 226 0 chr6 91412658 91412826 -58104211 + B3 SINE B2 1 206 -10 6 1282 730 196 218 6 chr6 91412827 91413001 -58104036 - B3 SINE B2 -4 212 2 6 1282 464 246 60 60 chr6 91413653 91413787 -58103250 - B1_Mur2 SINE Alu -6 143 10 6 1282 28 0 0 0 chr6 91413844 91413872 -58103165 + AT_rich Low_complexity Low_complexity 1 28 0 6 1282 999 111 119 23 chr6 91413875 91414051 -58102986 + B2_Mm2 SINE B2 3 195 0 6 1282 217 185 188 58 chr6 91416316 91416385 -58100652 - B1_Mur2 SINE Alu -8 141 64 6 1282 772 173 133 13 chr6 91416387 91416545 -58100492 + B3 SINE B2 39 215 -1 6 1282 180 0 0 0 chr6 91416553 91416573 -58100464 + (CCA)n Simple_repeat Simple_repeat 3 22 0 6 1282 407 229 75 9 chr6 91419848 91419954 -58097083 - PB1D7 SINE Alu -7 113 1 6 1282 21 0 0 0 chr6 91419971 91419992 -58097045 + AT_rich Low_complexity Low_complexity 1 21 0 6 1282 454 240 9 37 chr6 91420085 91420193 -58096844 + B1_Mur1 SINE Alu 42 146 -3 6 1282 450 267 0 0 chr6 91420238 91420343 -58096694 + B3 SINE B2 106 210 -6 6 1282 303 364 90 14 chr6 91420553 91420698 -58096339 + ID_B1 SINE B4 2 157 -67 6 1282 1408 90 32 0 chr6 91421347 91421535 -58095502 - B2_Mm2 SINE B2 0 195 2 6 1282 294 73 0 0 chr6 91421536 91421577 -58095460 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1282 596 193 8 32 chr6 91421577 91421700 -58095337 - PB1D9 SINE Alu 0 120 1 6 1282 478 189 0 11 chr6 91421856 91421947 -58095090 - B1_Mur1 SINE Alu 0 149 60 6 1282 273 274 95 76 chr6 91422352 91422510 -58094527 + MIR3 SINE MIR 33 193 -15 6 1282 218 250 0 0 chr6 91422890 91422934 -58094103 + MIR SINE MIR 209 252 -10 6 1282 182 276 182 10 chr6 91424929 91425028 -58092009 + MIR SINE MIR 14 129 -133 6 1282 203 156 0 0 chr6 91425051 91425083 -58091954 + MIRm SINE MIR 224 255 -21 6 1282 342 241 143 41 chr6 91425630 91425777 -58091260 - MIRb SINE MIR -86 182 21 6 1282 304 289 93 36 chr6 91426011 91426151 -58090886 + MIR SINE MIR 13 160 -102 6 1282 259 227 330 0 chr6 91426562 91426659 -58090378 - MIRb SINE MIR -89 179 51 6 1282 292 233 14 14 chr6 91427517 91427591 -58089446 - MLT1K LTR MaLR -208 387 314 6 1282 251 288 61 24 chr6 91427644 91427726 -58089311 - MLT1K LTR MaLR -423 172 88 6 1282 468 243 29 10 chr6 91431519 91431623 -58085414 + PB1D10 SINE Alu 12 117 0 6 1282 660 261 0 34 chr6 91431618 91431765 -58085272 + ID_B1 SINE B4 77 218 -6 6 1282 180 311 183 10 chr6 91434479 91434583 -58082454 - L2 LINE L2 -628 2791 2670 6 1282 190 319 130 11 chr6 91436115 91436207 -58080830 + MIRm SINE MIR 47 149 -127 6 1282 184 93 209 0 chr6 91438731 91438774 -58078263 + MIRm SINE MIR 137 188 -88 6 1282 404 265 59 0 chr6 91439748 91439850 -58077187 + PB1D10 SINE Alu 6 113 -4 6 1282 567 267 53 143 chr6 91441424 91441630 -58075407 + B4A SINE B4 5 185 -107 6 1282 1238 48 0 0 chr6 91441630 91441777 -58075260 - B1_Mus1 SINE Alu 0 148 2 6 1282 567 267 53 143 chr6 91441777 91441871 -58075166 + B4A SINE B4 186 278 -14 6 1282 211 176 0 0 chr6 91443051 91443085 -58073952 + C-rich Low_complexity Low_complexity 1 34 0 6 1282 216 216 0 0 chr6 91443389 91443426 -58073611 - PB1D7 SINE Alu -11 109 73 6 1282 203 185 114 4 chr6 91443575 91443635 -58073402 - MIR SINE MIR -115 161 89 6 1282 354 251 329 12 chr6 91444152 91444313 -58072724 + MTD LTR MaLR 5 216 -203 6 1282 543 188 60 8 chr6 91444324 91444458 -58072579 + MTD LTR MaLR 279 419 0 6 1282 45 75 0 0 chr6 91444934 91445028 -58072009 + AT_rich Low_complexity Low_complexity 1 94 0 6 1282 1270 34 0 0 chr6 91445567 91445714 -58071323 + B1_Mm SINE Alu 1 147 0 6 1282 1319 205 107 16 chr6 91448725 91448736 -58068301 + MTD LTR MaLR 1 11 -408 7 1282 210 37 0 0 chr6 91448736 91448763 -58068274 + (TTG)n Simple_repeat Simple_repeat 2 28 0 7 1282 1319 205 107 16 chr6 91448763 91449068 -58067969 + MTD LTR MaLR 12 345 -74 7 1282 578 257 56 18 chr6 91450158 91450312 -58066725 + ID_B1 SINE B4 84 246 -46 7 1282 625 266 65 0 chr6 91450687 91450826 -58066211 + RSINE1 SINE B4 4 151 -14 7 1282 247 327 87 68 chr6 91450826 91450848 -58066189 + B2_Mm1a SINE B2 3 166 -27 7 1282 216 0 0 0 chr6 91451181 91451205 -58065832 + (TAATG)n Simple_repeat Simple_repeat 2 25 0 7 1282 1048 143 120 0 chr6 91451324 91451533 -58065504 + RMER1B Other Other 822 1055 -11 7 1282 204 40 0 0 chr6 91451538 91451563 -58065474 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1282 291 271 39 77 chr6 91451563 91451667 -58065370 + ID_B1 SINE B4 72 171 -53 7 1282 394 232 29 57 chr6 91451584 91451689 -58065348 + PB1D10 SINE Alu 8 109 -8 7 1282 279 243 28 14 chr6 91451690 91451761 -58065276 + ID4 SINE ID 1 72 -11 7 1282 6217 161 49 28 chr6 91451880 91452790 -58064247 + MTC-int LTR MaLR 69 974 -284 7 1282 1461 83 16 0 chr6 91452790 91452982 -58064055 - B2_Mm2 SINE B2 0 195 1 7 1282 6217 161 49 28 chr6 91452982 91453236 -58063801 + MTC-int LTR MaLR 975 1258 0 7 1282 636 160 19 0 chr6 91453236 91453348 -58063689 + MTC LTR MaLR 1 121 -298 7 1282 837 225 26 11 chr6 91453348 91453537 -58063500 + Lx6 LINE L1 7153 7344 -116 7 1282 2012 163 16 6 chr6 91453608 91453923 -58063114 + MTC LTR MaLR 104 421 0 7 1282 295 263 126 8 chr6 91456493 91456612 -58060425 + MIRb SINE MIR 12 144 -124 7 1282 216 257 73 73 chr6 91456582 91456691 -58060346 - L3 LINE CR1 -3535 954 846 7 1282 1082 185 75 0 chr6 91456990 91457190 -58059847 + B3 SINE B2 1 215 -1 7 1282 420 205 186 8 chr6 91457376 91457494 -58059543 + B1F1 SINE Alu 10 148 -1 7 1282 271 252 141 83 chr6 91457511 91457632 -58059405 + RSINE1 SINE B4 38 165 0 7 1282 192 45 43 64 chr6 91458851 91458898 -58058139 + A-rich Low_complexity Low_complexity 2 47 0 7 1282 183 85 64 0 chr6 91459876 91459923 -58057114 + (CAAAAA)n Simple_repeat Simple_repeat 1 50 0 7 1282 263 331 50 22 chr6 91460194 91460333 -58056704 + MIRc SINE MIR 7 149 -119 7 1282 700 184 21 62 chr6 91461426 91461571 -58055466 + B1_Mur4 SINE Alu 5 143 -7 7 1282 186 103 0 0 chr6 91461815 91461844 -58055193 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1282 2349 166 40 2 chr6 91462054 91462452 -58054585 - MTC LTR MaLR -8 413 1 7 1282 471 246 9 9 chr6 91462483 91462598 -58054439 + PB1D7 SINE Alu 5 119 -1 7 1282 794 197 14 7 chr6 91462671 91462819 -58054218 - B1_Mur1 SINE Alu 0 149 1 7 1282 257 352 11 0 chr6 91463514 91463602 -58053435 + L2a LINE L2 3296 3384 -42 7 1282 845 162 80 11 chr6 91464072 91464247 -58052790 + B3 SINE B2 29 215 -1 7 1282 835 158 14 14 chr6 91465208 91465356 -58051681 + B1_Mur3 SINE Alu 1 148 -1 7 1282 21 71 0 0 chr6 91465848 91465890 -58051147 + GC_rich Low_complexity Low_complexity 1 42 0 7 1282 369 0 0 0 chr6 91466624 91466665 -58050372 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1282 279 0 0 0 chr6 91466731 91466762 -58050275 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1282 191 261 43 0 chr6 91466812 91466881 -58050156 + L2a LINE L2 3263 3334 -92 7 1282 376 188 58 12 chr6 91466884 91466970 -58050067 + B3A SINE B2 1 90 -108 7 1282 531 199 168 0 chr6 91467317 91467448 -58049589 - B3A SINE B2 -43 155 3 7 1282 417 196 59 49 chr6 91467506 91467608 -58049429 - PB1D9 SINE Alu -1 119 17 7 1282 235 292 79 0 chr6 91467545 91467634 -58049403 - B4A SINE B4 -123 169 74 7 1282 201 39 0 0 chr6 91467767 91467793 -58049244 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1282 421 316 11 0 chr6 91467925 91468020 -58049017 + PB1D10 SINE Alu 11 106 -11 7 1282 282 306 130 71 chr6 91468580 91468833 -58048204 - Tigger15a DNA TcMar -360 355 88 7 1282 455 282 48 16 chr6 91468954 91469080 -58047957 + B4A SINE B4 157 286 -6 7 1282 829 170 20 0 chr6 91469809 91469956 -58047081 - RMER15 LTR ERVL -180 395 246 7 1282 330 200 0 32 chr6 91469936 91469998 -58047039 - B1_Mus2 SINE Alu -86 61 2 7 1282 1091 210 40 0 chr6 91470029 91470229 -58046808 - B3 SINE B2 -3 213 6 7 1282 414 287 114 16 chr6 91470970 91471154 -58045883 - MLT1J-int LTR MaLR -1041 346 145 7 1282 424 288 72 84 chr6 91471463 91471630 -58045407 + ID_B1 SINE B4 4 168 -56 7 1282 414 306 29 7 chr6 91471650 91471788 -58045249 - B1F SINE Alu -8 141 1 7 1282 450 0 0 0 chr6 91471883 91471933 -58045104 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1282 299 247 10 110 chr6 91471953 91472053 -58044984 + PB1D10 SINE Alu 26 115 -2 7 1282 787 257 119 76 chr6 91473853 91474181 -58042856 + ORR1E LTR MaLR 1 342 -17 7 1282 969 238 138 0 chr6 91475977 91476217 -58040820 + B4A SINE B4 2 274 -18 7 1282 261 0 0 0 chr6 91476223 91476252 -58040785 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1282 195 322 21 53 chr6 91476540 91476635 -58040402 - MIR SINE MIR -61 147 56 7 1282 301 317 87 0 chr6 91476854 91476958 -58040079 + MIR SINE MIR 20 132 -76 7 1282 341 270 69 20 chr6 91477073 91477175 -58039862 + PB1D10 SINE Alu 1 107 -10 7 1282 180 77 0 0 chr6 91478856 91478882 -58038155 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1282 2368 134 49 18 chr6 91479111 91479640 -58037397 - RMER6A LTR ERVK 0 756 1 7 1282 193 291 68 34 chr6 91479815 91479961 -58037076 + L2c LINE L2 2917 3067 -308 7 1282 244 304 0 28 chr6 91480157 91480228 -58036809 + MER5A DNA MER1_type 2 70 -119 7 1282 393 325 55 10 chr6 91480519 91480718 -58036319 + L1MC4 LINE L1 6700 6907 -1135 7 1282 1079 259 22 18 chr6 91480722 91480994 -58036043 + B4 SINE B4 5 277 -15 7 1282 388 273 219 0 chr6 91481053 91481258 -58035779 + L1MC4 LINE L1 6894 7143 -899 7 1282 347 345 126 31 chr6 91481707 91481961 -58035076 + L1MC4 LINE L1 7282 7559 -483 7 1282 199 288 129 89 chr6 91482060 91482098 -58034939 + L2c LINE L2 3153 3197 -190 7 1282 405 253 116 0 chr6 91482098 91482244 -58034793 - RSINE1 SINE B4 0 165 3 7 1282 199 288 129 89 chr6 91482244 91482430 -58034607 + L2c LINE L2 3198 3385 -2 7 1282 248 298 84 11 chr6 91482545 91482640 -58034397 - B1F1 SINE Alu -47 102 1 7 1282 279 0 0 0 chr6 91484222 91484253 -58032784 + (TC)n Simple_repeat Simple_repeat 1 31 0 7 1282 216 0 0 0 chr6 91484253 91484276 -58032761 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1282 351 0 0 0 chr6 91484276 91484314 -58032723 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1282 323 240 65 74 chr6 91484350 91484458 -58032579 - MLT1A0 LTR MaLR -17 348 242 7 1282 581 165 43 52 chr6 91484870 91484985 -58032052 + PB1D7 SINE Alu 5 118 -2 7 1282 781 255 70 15 chr6 91485613 91485812 -58031225 + B3 SINE B2 2 211 -5 7 1282 854 267 16 21 chr6 91485879 91486035 -58031002 + B3A SINE B2 2 156 -42 7 1282 381 58 0 0 chr6 91486035 91486087 -58030950 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1282 854 267 16 21 chr6 91486087 91486121 -58030916 + B3A SINE B2 157 190 -8 7 1282 384 22 0 0 chr6 91486920 91486965 -58030072 + (TA)n Simple_repeat Simple_repeat 1 45 0 7 1282 203 161 0 0 chr6 91487213 91487244 -58029793 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1282 423 0 0 0 chr6 91487349 91487396 -58029641 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 7 1282 381 170 287 0 chr6 91487398 91487492 -58029545 - B1_Mur2 SINE Alu -20 129 9 7 1282 249 109 0 0 chr6 91487512 91487558 -58029479 + (A)n Simple_repeat Simple_repeat 1 46 0 7 1282 285 297 204 32 chr6 91487592 91487808 -58029229 - MLT1K LTR MaLR -92 503 251 7 1282 594 231 17 0 chr6 91487836 91487953 -58029084 - B3A SINE B2 -79 119 1 7 1282 563 221 105 21 chr6 91487981 91488124 -58028913 - ID_B1 SINE B4 -1 223 69 7 1282 352 252 160 0 chr6 91488106 91488225 -58028812 - ID_B1 SINE B4 -6 218 81 7 160 300 264 115 26 chr6 91488240 91488353 -58028684 - L1MD LINE L1 -832 5314 5192 7 1283 731 315 66 92 chr6 91488365 91488598 -58028439 - L1M4 LINE L1 -1018 5626 5379 7 1283 895 172 153 16 chr6 91488598 91488787 -58028250 + B3 SINE B2 2 216 0 7 1283 731 315 66 92 chr6 91488787 91489140 -58027897 - L1M4 LINE L1 -1266 5378 5055 7 1283 590 317 71 11 chr6 91489141 91489348 -58027689 - L1M4 LINE L1 -1979 4665 4444 7 1283 438 69 0 0 chr6 91489348 91489406 -58027631 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1283 590 317 71 11 chr6 91489406 91489479 -58027558 - L1M4 LINE L1 -2201 4443 4368 7 1283 332 270 212 21 chr6 91489652 91489841 -58027196 - L1M4 LINE L1 -2288 4350 4126 7 1283 819 156 54 47 chr6 91489951 91490099 -58026938 + B1_Mur4 SINE Alu 1 149 -1 7 1283 487 240 110 84 chr6 91490118 91490309 -58026728 - B3A SINE B2 -1 197 2 7 1283 316 281 0 103 chr6 91490344 91490451 -58026586 - PB1D10 SINE Alu -21 96 1 7 1283 765 203 0 0 chr6 91490508 91490636 -58026401 - B1_Mur1 SINE Alu -21 128 1 7 1283 891 163 126 40 chr6 91490845 91491043 -58025994 - B3 SINE B2 0 216 2 7 1283 222 116 0 0 chr6 91491087 91491130 -58025907 + (A)n Simple_repeat Simple_repeat 1 43 0 7 1283 344 228 67 38 chr6 91491178 91491283 -58025754 - L1M4 LINE L1 -5794 748 641 7 1283 306 221 127 93 chr6 91491568 91491718 -58025319 - L1M4 LINE L1 -6318 224 70 7 1283 228 239 14 69 chr6 91491792 91491864 -58025173 - LTR50 LTR ERVL -348 447 380 7 1283 327 49 0 0 chr6 91491945 91491986 -58025051 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1283 534 31 0 0 chr6 91492010 91492074 -58024963 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1283 406 234 53 26 chr6 91492488 91492602 -58024435 - PB1D10 SINE Alu 0 117 1 7 1283 359 295 163 35 chr6 91492586 91492758 -58024279 + LTR16C LTR ERVL 3 196 -293 7 1283 257 327 142 48 chr6 91493650 91493939 -58023098 + L2 LINE L2 2090 2405 -1014 7 1283 340 354 55 34 chr6 91494077 91494314 -58022723 - ORR1E LTR MaLR -117 242 1 7 1283 213 39 0 0 chr6 91494899 91494925 -58022112 + (TA)n Simple_repeat Simple_repeat 1 26 0 7 1283 1179 132 60 0 chr6 91494953 91495135 -58021902 - B2_Mm2 SINE B2 -1 194 2 7 1283 1451 267 54 16 chr6 91495515 91495888 -58021149 - MTD LTR MaLR -15 404 18 8 1283 217 256 49 49 chr6 91495972 91496054 -58020983 + MIR SINE MIR 58 139 -69 8 1283 1228 168 13 43 chr6 91496887 91497118 -58019919 + URR1B DNA MER1_type 2 225 0 8 1283 522 214 3 2 chr6 91497341 91497448 -58019589 + PB1D10 SINE Alu 13 120 0 8 1283 342 0 0 0 chr6 91497569 91497607 -58019430 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1283 733 175 86 21 chr6 91497607 91497747 -58019290 - B1_Mur2 SINE Alu 0 149 1 8 1283 203 289 75 50 chr6 91499078 91499198 -58017839 - L2 LINE L2 -470 2949 2827 8 1283 342 326 28 35 chr6 91499229 91499372 -58017665 + MER58B DNA MER1_type 179 320 -21 8 1283 202 278 14 113 chr6 91500320 91500462 -58016575 + L3 LINE CR1 4149 4276 -213 1 1283 351 0 0 0 chr6 91500649 91500688 -58016349 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1283 406 154 0 0 chr6 91500742 91500801 -58016236 + B3A SINE B2 1 59 -139 3 1283 2267 92 13 6 chr6 91500801 91501117 -58015920 + ORR1A3 LTR MaLR 1 318 -8 4 1283 540 243 154 0 chr6 91501131 91501230 -58015807 + B3 SINE B2 60 166 -50 3 1283 189 0 0 0 chr6 91501230 91501251 -58015786 + (CATA)n Simple_repeat Simple_repeat 3 23 0 5 1283 540 243 154 0 chr6 91501251 91501287 -58015750 + B3 SINE B2 167 215 -1 3 1283 437 268 68 45 chr6 91501294 91501427 -58015610 + B1F SINE Alu 1 136 -13 6 1283 399 230 62 125 chr6 91502356 91502500 -58014537 + B1F SINE Alu 13 147 -2 7 1283 380 296 192 30 chr6 91502764 91502931 -58014106 - B3A SINE B2 -2 196 3 8 1283 499 214 161 0 chr6 91502944 91503056 -58013981 - B1_Mur1 SINE Alu -19 130 1 9 1283 526 296 86 11 chr6 91503096 91503270 -58013767 + B3A SINE B2 1 187 -11 1 1283 765 230 0 18 chr6 91503736 91503900 -58013137 - B3A SINE B2 -1 197 37 1 1283 1542 221 67 18 chr6 91504401 91504742 -58012295 + MTE2a LTR MaLR 3 360 -19 1 1283 768 291 59 52 chr6 91505181 91505471 -58011566 - B4 SINE B4 0 292 1 1 1283 960 226 34 24 chr6 91505481 91505520 -58011517 - B3 SINE B2 -3 213 175 1 1283 327 25 0 0 chr6 91505520 91505560 -58011477 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1283 960 226 34 24 chr6 91505560 91505729 -58011308 - B3 SINE B2 -42 174 3 1 1283 303 122 0 0 chr6 91505741 91505790 -58011247 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1283 23 33 0 0 chr6 91505833 91505863 -58011174 + AT_rich Low_complexity Low_complexity 1 30 0 1 1283 1291 34 0 0 chr6 91505866 91506013 -58011024 - B1_Mm SINE Alu 0 147 1 1 1283 2628 179 175 34 chr6 91506161 91506807 -58010230 + RMER19A LTR ERVK 1 737 0 1 1283 276 146 24 0 chr6 91507018 91507059 -58009978 - ID_B1 SINE B4 -18 206 165 2 1283 1100 89 7 27 chr6 91507317 91507467 -58009570 - B1_Mus2 SINE Alu 0 147 1 2 1283 648 248 89 0 chr6 91507735 91507892 -58009145 - ID_B1 SINE B4 0 224 54 2 1283 307 284 0 38 chr6 91508292 91508330 -58008707 + ID_B1 SINE B4 120 218 -3 2 1283 432 154 0 0 chr6 91508330 91508395 -58008642 + B1F1 SINE Alu 79 143 -6 2 1283 700 327 86 11 chr6 91508502 91508771 -58008266 - B4A SINE B4 -2 290 2 2 1283 243 278 0 0 chr6 91508801 91508855 -58008182 - ID4 SINE ID -14 69 16 2 1283 379 123 28 52 chr6 91508863 91508961 -58008076 - PB1D10 SINE Alu -1 148 55 2 1283 414 261 78 12 chr6 91509282 91509449 -58007588 - L1ME1 LINE L1 -134 6045 5868 2 1283 246 309 59 59 chr6 91509529 91509715 -58007322 - L1ME1 LINE L1 -319 5860 5675 2 1283 593 248 14 47 chr6 91509722 91509870 -58007167 - ID_B1 SINE B4 0 224 82 2 1283 273 275 47 22 chr6 91509877 91510031 -58007006 - L1ME1 LINE L1 -520 5659 5503 2 1283 213 307 190 17 chr6 91510304 91510420 -58006617 - MIRm SINE MIR -127 149 14 3 1283 285 319 0 0 chr6 91510722 91510791 -58006246 - ID4 SINE ID -10 73 5 3 1283 496 270 0 18 chr6 91510924 91511054 -58005983 + B1F SINE Alu 2 129 -21 3 1283 323 271 68 34 chr6 91511695 91511783 -58005254 + PB1D10 SINE Alu 1 91 -26 3 1283 205 355 84 21 chr6 91511788 91511883 -58005154 + MIRb SINE MIR 47 147 -121 3 1283 927 118 44 0 chr6 91512161 91512296 -58004741 + B1_Mus1 SINE Alu 2 142 -6 3 1283 551 112 64 0 chr6 91512343 91512468 -58004569 + (CAGAGA)n Simple_repeat Simple_repeat 4 136 0 3 1283 213 333 118 68 chr6 91512871 91513251 -58003786 + L2b LINE L2 2947 3345 -30 3 1283 1933 154 22 9 chr6 91514254 91514575 -58002462 + ORR1B2 LTR MaLR 1 325 -42 3 1283 1193 68 0 0 chr6 91514575 91514721 -58002316 + B1_Mus2 SINE Alu 2 147 0 3 1283 339 143 0 0 chr6 91514762 91514818 -58002219 + ORR1A4 LTR MaLR 274 329 0 4 1283 234 282 81 23 chr6 91514849 91514936 -58002101 + MLT1A LTR MaLR 6 97 -277 4 1283 242 260 82 0 chr6 91516196 91516269 -58000768 + MIR SINE MIR 54 132 -76 4 1283 1655 37 0 0 chr6 91516765 91516956 -58000081 - B2_Mm1a SINE B2 -1 192 2 4 1283 1033 234 96 94 chr6 91516985 91517107 -57999930 - MTD LTR MaLR 0 419 313 4 1283 685 189 72 7 chr6 91517107 91517246 -57999791 + B1_Mur3 SINE Alu 1 148 -1 4 1283 1033 234 96 94 chr6 91517246 91517528 -57999509 - MTD LTR MaLR -107 312 14 4 1283 284 175 100 30 chr6 91517540 91517640 -57999397 - MTD-int LTR MaLR -4 1254 1148 4 1283 402 271 40 67 chr6 91517636 91517655 -57999382 + ID_B1 SINE B4 70 211 -13 4 1283 703 178 23 15 chr6 91517655 91517780 -57999257 + B1_Mur2 SINE Alu 9 136 -13 4 1283 297 0 0 0 chr6 91517780 91517813 -57999224 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 4 1283 1841 198 259 36 chr6 91517814 91518416 -57998621 - MTD-int LTR MaLR -143 1115 380 4 1283 652 238 124 6 chr6 91518438 91518599 -57998438 - B3A SINE B2 -18 180 1 4 1283 481 248 164 7 chr6 91518620 91518766 -57998271 - MTD LTR MaLR -243 176 8 5 1283 236 131 0 21 chr6 91518897 91518944 -57998093 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1283 1015 262 75 46 chr6 91519642 91519789 -57997248 - MTE2a LTR MaLR -2 377 232 5 1283 2430 129 26 19 chr6 91519789 91520168 -57996869 - RLTR14 LTR ERV1 0 382 1 5 1283 1015 248 75 34 chr6 91520168 91520378 -57996659 - MTE2a LTR MaLR -148 231 6 5 1283 331 331 103 33 chr6 91520973 91521157 -57995880 + YREP_Mm Unknown Unknown 115 311 -1501 5 1283 1052 234 5 0 chr6 91521038 91521239 -57995798 - ID_B1 SINE B4 -20 204 3 5 1283 565 305 0 47 chr6 91521307 91521455 -57995582 + RSINE1 SINE B4 3 143 -22 5 1283 369 0 0 0 chr6 91521460 91521501 -57995536 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1283 331 332 160 32 chr6 91521526 91521858 -57995179 - L1M5 LINE L1 -1050 5096 4740 5 1283 417 20 0 0 chr6 91521858 91521908 -57995129 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 5 1283 331 332 160 32 chr6 91521908 91522408 -57994629 - L1M5 LINE L1 -1407 4739 4159 5 1283 333 208 0 0 chr6 91522537 91522609 -57994428 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1283 3498 93 131 4 chr6 91523080 91523598 -57993439 + MT2B2 LTR ERVL 1 584 0 6 1283 591 304 16 26 chr6 91524069 91524258 -57992779 - MLT1K LTR MaLR -3 592 406 6 1283 587 250 82 12 chr6 91524866 91525036 -57992001 - RMER30 DNA MER1_type -1 201 20 6 1283 638 242 8 8 chr6 91525120 91525253 -57991784 - ID_B1 SINE B4 -10 214 82 6 1283 23 0 0 0 chr6 91526430 91526453 -57990584 + AT_rich Low_complexity Low_complexity 1 23 0 6 1283 211 208 21 0 chr6 91527392 91527440 -57989597 + L2c LINE L2 3106 3154 -233 6 1283 324 0 0 0 chr6 91527621 91527657 -57989380 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1283 594 204 0 34 chr6 91527690 91527807 -57989230 - B1_Mur1 SINE Alu -36 113 1 6 1283 526 240 29 0 chr6 91527832 91527936 -57989101 - RSINE1 SINE B4 -28 137 31 6 1283 503 305 306 54 chr6 91528233 91528642 -57988395 + MLT1G1 LTR MaLR 14 525 -54 7 1283 924 244 45 32 chr6 91528643 91528661 -57988376 - ID_B1 SINE B4 0 224 212 7 1283 387 0 0 0 chr6 91528661 91528704 -57988333 + (TTG)n Simple_repeat Simple_repeat 1 43 0 7 1283 924 244 45 32 chr6 91528704 91528905 -57988132 - ID_B1 SINE B4 -13 211 2 7 1283 705 174 17 0 chr6 91531790 91531905 -57985132 + PB1D9 SINE Alu 2 118 -2 7 1283 497 305 78 73 chr6 91531907 91532098 -57984939 + ID_B1 SINE B4 11 202 -22 7 1283 207 0 0 0 chr6 91532109 91532132 -57984905 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 7 1283 639 305 20 0 chr6 91532370 91532570 -57984467 - L1MC4a LINE L1 0 7882 7679 7 1283 799 243 39 11 chr6 91532725 91532904 -57984133 + B3A SINE B2 2 185 -13 7 1283 261 0 0 0 chr6 91532904 91532933 -57984104 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1283 1258 108 10 61 chr6 91533134 91533331 -57983706 - B2_Mm1t SINE B2 -5 188 2 7 1283 759 289 46 43 chr6 91533336 91533640 -57983397 - L1MD2 LINE L1 -457 5902 5598 8 1283 635 248 14 7 chr6 91534101 91534243 -57982794 - ID_B1 SINE B4 0 224 82 8 1283 484 305 0 0 chr6 91534244 91534349 -57982688 - PB1D10 SINE Alu 0 117 13 8 1283 261 0 0 0 chr6 91534416 91534445 -57982592 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1283 313 298 0 11 chr6 91534896 91534991 -57982046 - L1M5 LINE L1 -616 5508 5415 8 1283 609 268 132 11 chr6 91535273 91535447 -57981590 + ID_B1 SINE B4 17 211 -13 8 1283 297 0 0 0 chr6 91535448 91535481 -57981556 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 8 1283 261 301 129 29 chr6 91536231 91536371 -57980666 + LTR48 LTR ERV1 632 785 -2 8 1283 215 370 0 0 chr6 91536758 91536831 -57980206 - L2b LINE L2 -16 3359 3287 8 1283 839 153 42 35 chr6 91536965 91537096 -57979941 + B1_Mur1 SINE Alu 2 136 -13 8 1283 318 50 0 0 chr6 91537096 91537136 -57979901 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 9 1283 354 178 11 22 chr6 91537159 91537237 -57979800 + GA-rich Low_complexity Low_complexity 3 80 0 9 1283 1053 150 0 0 chr6 91537237 91537417 -57979620 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1283 354 178 11 22 chr6 91537417 91537430 -57979607 + polypurine Low_complexity Low_complexity 81 93 0 9 1283 1187 86 0 0 chr6 91537459 91537611 -57979426 + B2_Mm2 SINE B2 1 152 -43 9 1283 189 0 0 0 chr6 91537617 91537638 -57979399 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 9 1283 352 298 52 22 chr6 91537668 91537802 -57979235 + ID_B1 SINE B4 80 217 -7 9 1283 202 222 0 0 chr6 91538996 91539032 -57978005 + polypurine Low_complexity Low_complexity 4 39 0 9 1283 232 353 79 57 chr6 91539193 91539370 -57977667 + MLT1K LTR MaLR 25 205 -390 9 1283 181 216 149 0 chr6 91540341 91540415 -57976622 - MIRc SINE MIR -149 119 35 9 1283 271 266 31 0 chr6 91542072 91542136 -57974901 + MIR SINE MIR 26 91 -171 1 1283 275 224 128 26 chr6 91542191 91542269 -57974768 - MER117 DNA MER1_type -16 181 96 1 1283 187 331 182 7 chr6 91542389 91542526 -57974511 - L3 LINE CR1 -88 4401 4241 1 1283 474 18 0 0 chr6 91542715 91542770 -57974267 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1283 302 265 141 121 chr6 91543472 91543678 -57973359 + ID_B1 SINE B4 2 211 -13 1 1283 990 82 7 0 chr6 91543688 91543823 -57973214 - B1_Mur4 SINE Alu 0 150 15 1 1283 876 162 161 42 chr6 91544105 91544298 -57972739 + B3 SINE B2 1 216 0 1 1283 280 275 294 0 chr6 91544464 91544573 -57972464 + B4 SINE B4 97 237 -55 1 1283 694 183 0 16 chr6 91544570 91544692 -57972345 + B1_Mur2 SINE Alu 30 149 0 1 1283 995 209 48 0 chr6 91545157 91545363 -57971674 + B3 SINE B2 1 216 0 1 1283 1041 122 53 48 chr6 91545365 91545554 -57971483 + B2_Mm2 SINE B2 2 191 -4 1 1283 232 208 364 0 chr6 91545604 91545681 -57971356 + RSINE1 SINE B4 40 144 -21 1 1283 4736 58 0 0 chr6 91545872 91546462 -57970575 + L1_Mus1 LINE L1 5990 6567 0 1 1283 659 285 40 0 chr6 91546484 91546712 -57970325 + L1MB7 LINE L1 5903 6139 -45 1 1283 234 150 0 0 chr6 91546755 91546795 -57970242 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1283 629 187 24 24 chr6 91547555 91547681 -57969356 + B1_Mur3 SINE Alu 3 128 -21 1 1283 706 296 81 18 chr6 91547707 91547979 -57969058 + B4A SINE B4 1 289 -3 1 1283 566 227 10 0 chr6 91548007 91548104 -57968933 + PB1D7 SINE Alu 15 112 -8 1 1283 375 0 55 0 chr6 91548124 91548179 -57968858 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 1 1283 235 222 18 53 chr6 91548204 91548261 -57968776 + 4.5SRNA scRNA scRNA 34 88 -6 1 1283 275 238 83 48 chr6 91549577 91549661 -57967376 + MT2B LTR ERVL 170 256 -345 1 1283 665 134 53 18 chr6 91549591 91549705 -57967332 + B1_Mur1 SINE Alu 32 149 0 1 1283 347 229 51 20 chr6 91549761 91549859 -57967178 - MIR SINE MIR -67 141 41 1 1283 384 268 25 67 chr6 91550986 91551106 -57965931 + PB1D10 SINE Alu 2 116 -1 1 1283 439 148 171 0 chr6 91551127 91551215 -57965822 + B3 SINE B2 114 216 0 1 1283 270 281 0 0 chr6 91551379 91551436 -57965601 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1283 184 226 36 36 chr6 91551680 91551735 -57965302 + MIRb SINE MIR 118 172 -96 1 1283 331 212 15 0 chr6 91551752 91551818 -57965219 + ID2 SINE ID 3 69 -14 1 1283 271 326 39 71 chr6 91552368 91552523 -57964514 + RLTR20B3 LTR ERVK 115 264 -313 1 1283 4021 248 95 51 chr6 91552790 91554126 -57962911 + ORR1D1-int LTR MaLR 73 1467 -42 1 1283 1440 167 196 19 chr6 91554143 91554460 -57962577 + ORR1D1 LTR MaLR 1 373 -1 1 1283 333 306 50 46 chr6 91554642 91554807 -57962230 - L2c LINE L2 -280 3095 2933 1 1283 417 338 36 14 chr6 91555853 91555991 -57961046 - RSINE1 SINE B4 -22 143 3 1 1283 184 273 162 29 chr6 91556040 91556108 -57960929 + MIR SINE MIR 36 112 -96 1 1283 205 338 74 15 chr6 91556355 91556490 -57960547 - MIRc SINE MIR -98 170 28 1 1283 2452 125 32 7 chr6 91557323 91557726 -57959311 - MTC LTR MaLR -8 413 1 1 1283 352 237 6 40 chr6 91558270 91558446 -57958591 + GA-rich Low_complexity Low_complexity 1 170 0 1 1283 189 0 0 0 chr6 91558998 91559019 -57958018 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1283 488 118 0 23 chr6 91559059 91559146 -57957891 + (TATG)n Simple_repeat Simple_repeat 4 88 0 1 1283 615 253 7 20 chr6 91559164 91559317 -57957720 - RSINE1 SINE B4 0 165 15 1 1283 249 180 0 0 chr6 91559370 91559420 -57957617 + GA-rich Low_complexity Low_complexity 2 51 0 1 1283 820 187 17 0 chr6 91559437 91559711 -57957326 + GA-rich Low_complexity Low_complexity 1 278 0 1 1283 618 189 9 0 chr6 91560684 91560790 -57956247 + PB1D7 SINE Alu 2 108 -12 1 1283 2165 121 24 9 chr6 91560893 91561234 -57955803 - ORR1A1 LTR MaLR 0 346 1 1 1283 465 127 25 12 chr6 91561367 91561447 -57955590 - Lx9 LINE L1 -434 7210 7130 1 1283 1860 176 155 9 chr6 91561590 91562036 -57955001 - Lx9 LINE L1 -2 7642 7132 1 1283 928 186 67 5 chr6 91562133 91562328 -57954709 + B3 SINE B2 6 212 -4 1 1283 271 292 85 104 chr6 91562331 91562591 -57954446 - L1MB7 LINE L1 0 6184 5930 1 1283 283 341 14 21 chr6 91562655 91562796 -57954241 - L1M5 LINE L1 -397 5782 5643 1 1283 1175 173 9 27 chr6 91562814 91563034 -57954003 - B3 SINE B2 0 216 1 1 1283 611 189 210 6 chr6 91563282 91563458 -57953579 - B3 SINE B2 -4 212 1 1 1283 216 0 0 0 chr6 91563658 91563682 -57953355 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1 1283 355 186 71 0 chr6 91563717 91563787 -57953250 - PB1D7 SINE Alu 0 120 46 1 1283 932 147 0 13 chr6 91564123 91564275 -57952762 - B1_Mur4 SINE Alu 0 150 1 1 1283 198 0 0 0 chr6 91564298 91564320 -57952717 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1 1283 377 240 19 48 chr6 91564353 91564458 -57952579 - RSINE1 SINE B4 -61 104 3 1 1283 1263 98 0 0 chr6 91564565 91564790 -57952247 + (TGG)n Simple_repeat Simple_repeat 1 225 0 1 1283 230 293 60 12 chr6 91564848 91564931 -57952106 + BC1_Mm scRNA scRNA 20 106 -46 1 1283 362 302 65 26 chr6 91565968 91566121 -57950916 - RMER15 LTR ERVL -70 505 347 1 1283 529 294 39 0 chr6 91567327 91567480 -57949557 + MLT1J2 LTR MaLR 31 189 -259 1 1283 241 200 63 48 chr6 91567584 91567647 -57949390 + MLT1J2 LTR MaLR 385 448 0 1 1283 448 198 33 1 chr6 91568386 91568484 -57948553 + RSINE1 SINE B4 13 111 -181 1 1283 545 316 30 15 chr6 91568534 91568733 -57948304 + Lx5 LINE L1 6849 7050 0 1 1283 315 0 0 0 chr6 91568836 91568871 -57948166 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1283 655 266 113 0 chr6 91568872 91569049 -57947988 + B3 SINE B2 15 211 -5 1 1283 248 308 13 13 chr6 91569108 91569187 -57947850 + MLT1J LTR MaLR 237 315 -197 1 1283 376 286 0 10 chr6 91569339 91569438 -57947599 - PB1D10 SINE Alu 0 117 20 1 1283 201 39 0 0 chr6 91569556 91569582 -57947455 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1283 208 307 69 10 chr6 91570818 91570920 -57946117 - MIR SINE MIR -73 189 82 1 1283 273 304 71 8 chr6 91571261 91571387 -57945650 + L2a LINE L2 3291 3424 -2 1 1283 378 0 0 0 chr6 91572275 91572317 -57944720 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1 1283 809 193 0 0 chr6 91572317 91572457 -57944580 - B1_Mus1 SINE Alu -8 140 1 1 1283 439 260 10 0 chr6 91572751 91572847 -57944190 + B1F SINE Alu 24 120 -29 1 1283 820 217 57 29 chr6 91572949 91573158 -57943879 - B3 SINE B2 -1 215 1 1 1283 711 261 7 29 chr6 91573282 91573481 -57943556 + B3 SINE B2 16 195 0 1 1283 847 137 0 0 chr6 91573510 91573641 -57943396 + B1_Mus1 SINE Alu 12 142 -6 1 1283 252 0 0 0 chr6 91573642 91573670 -57943367 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1283 6795 151 32 93 chr6 91573807 91575947 -57941090 + ORR1B1-int LTR MaLR 8 1792 0 1 1283 333 0 0 0 chr6 91577603 91577640 -57939397 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1283 265 246 0 28 chr6 91577647 91577718 -57939319 - ID4 SINE ID -11 72 4 1 1283 182 268 107 0 chr6 91578390 91578446 -57938591 - MIR SINE MIR -1 261 200 1 1283 2236 152 25 51 chr6 91578525 91578915 -57938122 - MTC LTR MaLR -1 420 41 1 1283 4371 122 21 22 chr6 91578915 91579669 -57937368 - RMER6A LTR ERVK -3 753 1 1 1283 2236 152 25 51 chr6 91579669 91579709 -57937328 - MTC LTR MaLR -381 40 1 1 1283 232 286 120 11 chr6 91580390 91580482 -57936555 + MIRb SINE MIR 17 118 -144 1 1283 894 140 257 0 chr6 91580602 91580681 -57936356 - URR1B DNA MER1_type 0 225 147 1 1283 1347 81 11 0 chr6 91580681 91580867 -57936170 - B2_Mm2 SINE B2 -6 189 2 1 1283 894 140 257 0 chr6 91580867 91580966 -57936071 - URR1B DNA MER1_type -79 146 2 1 1283 791 164 7 21 chr6 91581162 91581305 -57935732 - B1_Mur3 SINE Alu 0 149 9 1 1283 260 283 74 97 chr6 91581219 91581395 -57935642 - MT2B2 LTR ERVL -337 247 76 1 1283 1014 187 21 5 chr6 91581871 91582065 -57934972 - B3 SINE B2 -19 197 1 1 1283 276 350 28 21 chr6 91582646 91582789 -57934248 - MIRb SINE MIR -69 199 56 1 1283 884 226 45 36 chr6 91583074 91583294 -57933743 + B4A SINE B4 71 292 0 1 1283 227 204 0 0 chr6 91583298 91583342 -57933695 + (CATA)n Simple_repeat Simple_repeat 1 44 0 1 1283 246 271 14 0 chr6 91584009 91584079 -57932958 - MIRb SINE MIR -81 187 117 1 1283 417 39 0 0 chr6 91584265 91584316 -57932721 + (TCCC)n Simple_repeat Simple_repeat 1 51 0 1 1283 300 247 14 0 chr6 91584503 91584576 -57932461 - ID4 SINE ID -4 79 6 1 1283 875 217 53 24 chr6 91585582 91585790 -57931247 + ID_B1 SINE B4 11 224 0 1 1283 274 370 116 0 chr6 91585842 91585980 -57931057 - MER45C DNA Tip100 -155 798 645 1 1283 751 203 42 0 chr6 91586377 91586520 -57930517 + B1_Mur1 SINE Alu 1 149 0 1 1283 545 0 0 15 chr6 91587535 91587601 -57929436 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 1 1283 617 255 0 0 chr6 91587606 91587751 -57929286 - ID_B1 SINE B4 0 224 80 1 1283 26 74 0 0 chr6 91588995 91589049 -57927988 + AT_rich Low_complexity Low_complexity 1 54 0 1 1283 517 264 146 16 chr6 91589059 91589244 -57927793 - B3A SINE B2 -1 215 7 1 1283 689 97 22 7 chr6 91589265 91589400 -57927637 + (TG)n Simple_repeat Simple_repeat 1 137 0 1 1283 325 116 14 14 chr6 91589440 91589510 -57927527 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1283 186 103 0 0 chr6 91589527 91589556 -57927481 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 2 1283 653 171 9 20 chr6 91589571 91589923 -57927114 + (TG)n Simple_repeat Simple_repeat 1 347 0 2 1283 741 267 14 54 chr6 91589923 91589969 -57927068 - B3 SINE B2 0 216 171 2 1283 4280 16 0 0 chr6 91589969 91590462 -57926575 - MT2_Mm LTR ERVL 0 493 1 2 1283 741 267 14 54 chr6 91590462 91590637 -57926400 - B3 SINE B2 -46 170 4 2 1283 485 294 44 0 chr6 91590647 91590783 -57926254 - ID_B1 SINE B4 -5 219 78 2 1283 1617 26 0 0 chr6 91591439 91591632 -57925405 + B2_Mm1a SINE B2 1 193 0 2 1283 216 265 14 29 chr6 91592595 91592665 -57924372 - L2b LINE L2 -312 3063 2995 2 1283 671 255 28 10 chr6 91593935 91594118 -57922919 + B3A SINE B2 27 216 0 2 1283 390 233 61 6 chr6 91594160 91594270 -57922767 + PB1D10 SINE Alu 1 110 -7 2 1283 622 149 40 24 chr6 91594271 91594395 -57922642 + B1_Mus2 SINE Alu 22 147 0 2 1283 288 275 0 0 chr6 91594512 91594581 -57922456 + ID_B1 SINE B4 76 144 -80 2 1283 530 225 43 21 chr6 91594697 91594838 -57922199 - B1_Mur1 SINE Alu -5 144 1 2 1283 369 0 0 0 chr6 91594850 91594891 -57922146 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1283 445 224 86 0 chr6 91594926 91595042 -57921995 - ID_B1 SINE B4 -5 219 94 2 1283 763 273 22 3 chr6 91595056 91595255 -57921782 + ID_B1 SINE B4 32 236 -56 2 1283 193 372 21 0 chr6 91595458 91595552 -57921485 + MIRb SINE MIR 38 133 -135 2 1283 208 357 55 35 chr6 91597834 91597979 -57919058 - L2c LINE L2 -309 3078 2931 2 1283 454 168 0 27 chr6 91598730 91598840 -57918197 + CT-rich Low_complexity Low_complexity 2 108 0 2 1283 30 0 0 0 chr6 91598917 91598947 -57918090 + AT_rich Low_complexity Low_complexity 1 30 0 2 1283 325 139 38 0 chr6 91598967 91599046 -57917991 + GA-rich Low_complexity Low_complexity 4 85 0 2 1283 1700 186 195 11 chr6 91599052 91599511 -57917526 - Lx7 LINE L1 -349 7347 6804 2 1283 374 308 12 70 chr6 91599901 91600072 -57916965 + MIR SINE MIR 21 181 -81 2 1283 527 189 0 21 chr6 91600172 91600269 -57916768 - ID_B1 SINE B4 -35 189 95 2 1283 261 83 0 0 chr6 91601249 91601285 -57915752 + (CCCCCA)n Simple_repeat Simple_repeat 3 38 0 2 1283 544 236 61 1 chr6 91601578 91601642 -57915395 + ID SINE ID 10 87 -137 2 1283 347 245 93 9 chr6 91601642 91601749 -57915288 + PB1D10 SINE Alu 1 116 -1 2 1283 885 98 98 0 chr6 91601755 91601888 -57915149 + B1_Mus1 SINE Alu 3 148 0 2 1283 525 32 0 0 chr6 91601991 91602054 -57914983 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1283 495 269 31 0 chr6 91602964 91603094 -57913943 + ID_B1 SINE B4 87 220 -4 2 1283 292 323 0 0 chr6 91604096 91604192 -57912845 + B1F1 SINE Alu 10 105 -44 2 1283 276 154 0 0 chr6 91604203 91604255 -57912782 + GA-rich Low_complexity Low_complexity 2 53 0 2 1283 518 256 71 57 chr6 91604265 91604351 -57912686 + ID_B1 SINE B4 3 93 -131 2 1283 764 194 0 0 chr6 91604351 91604490 -57912547 + B1_Mus2 SINE Alu 1 139 -8 2 1283 207 0 0 0 chr6 91604490 91604513 -57912524 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1283 518 256 71 57 chr6 91604513 91604636 -57912401 + ID_B1 SINE B4 94 215 -9 2 1283 524 217 184 65 chr6 91604676 91604844 -57912193 - B3 SINE B2 -6 210 11 2 1283 375 231 43 77 chr6 91604862 91604979 -57912058 - B1F2 SINE Alu 0 120 8 2 1283 323 270 115 18 chr6 91605643 91605777 -57911260 + MIR SINE MIR 4 154 -122 2 1283 183 80 0 0 chr6 91605960 91605985 -57911052 + (CCCCCA)n Simple_repeat Simple_repeat 1 25 0 2 1283 430 293 181 0 chr6 91606469 91606602 -57910435 + RSINE1 SINE B4 1 157 -8 2 1283 372 43 0 0 chr6 91606828 91606874 -57910163 + (CTCA)n Simple_repeat Simple_repeat 2 47 0 2 1283 211 203 29 0 chr6 91607502 91607571 -57909466 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1283 1575 11 11 0 chr6 91607592 91607778 -57909259 - B2_Mm1a SINE B2 -4 189 2 2 1283 207 0 0 0 chr6 91607891 91607914 -57909123 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1283 1102 82 0 0 chr6 91607919 91608065 -57908972 - B1_Mm SINE Alu 0 147 2 2 1283 273 250 74 74 chr6 91608066 91608161 -57908876 - RSINE1 SINE B4 -61 104 10 2 1283 497 254 18 0 chr6 91608166 91608276 -57908761 - PB1D7 SINE Alu 0 120 9 2 1283 367 141 13 13 chr6 91608643 91608722 -57908315 + CT-rich Low_complexity Low_complexity 6 84 0 2 1283 486 0 0 0 chr6 91608883 91608937 -57908100 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1283 328 298 68 8 chr6 91609325 91609457 -57907580 + B1F SINE Alu 1 140 -9 2 1283 363 96 0 0 chr6 91610678 91610730 -57906307 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1283 209 33 0 32 chr6 91610790 91610821 -57906216 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 2 1283 864 261 10 0 chr6 91610821 91611020 -57906017 - ID_B1 SINE B4 -23 201 1 2 1283 198 0 0 0 chr6 91611139 91611161 -57905876 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1283 600 181 134 0 chr6 91611198 91611325 -57905712 - B1F SINE Alu -5 144 1 2 1283 581 262 15 45 chr6 91611422 91611453 -57905584 - B3A SINE B2 0 198 170 2 1283 225 0 0 0 chr6 91611453 91611478 -57905559 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 1283 581 262 15 45 chr6 91611478 91611646 -57905391 - B3A SINE B2 -29 169 5 2 1283 262 311 12 0 chr6 91611814 91611911 -57905126 + MIRc SINE MIR 66 164 -98 2 1283 428 272 26 17 chr6 91612099 91612215 -57904822 + B1F1 SINE Alu 30 146 -3 2 1283 23 0 0 0 chr6 91612304 91612327 -57904710 + AT_rich Low_complexity Low_complexity 1 23 0 2 1283 617 262 61 9 chr6 91612551 91612763 -57904274 - ID_B1 SINE B4 0 224 2 2 1283 426 210 29 20 chr6 91612802 91612904 -57904133 - B4A SINE B4 -12 280 178 2 1283 227 179 29 43 chr6 91612904 91612974 -57904063 + (TTTG)n Simple_repeat Simple_repeat 4 72 0 2 1283 242 322 47 47 chr6 91613005 91613155 -57903882 - B4A SINE B4 -118 174 25 2 1283 236 229 97 16 chr6 91613104 91613166 -57903871 - tRNA-Ala-GCA tRNA tRNA -7 68 2 2 1283 1114 71 155 0 chr6 91613255 91613423 -57903614 - B2_Mm2 SINE B2 0 195 2 2 1283 1594 31 0 0 chr6 91614160 91614353 -57902684 + B2_Mm1a SINE B2 1 193 0 2 1283 207 0 0 0 chr6 91614353 91614376 -57902661 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1283 180 0 0 0 chr6 91614622 91614642 -57902395 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 2 1283 422 288 273 3 chr6 91614853 91615238 -57901799 + MLT1F LTR MaLR 53 560 0 2 1283 677 257 35 12 chr6 91616449 91616622 -57900415 - B3A SINE B2 -18 180 4 2 1283 502 296 0 7 chr6 91616622 91616758 -57900279 - B1F SINE Alu -3 146 12 2 1283 24 32 0 0 chr6 91616852 91616883 -57900154 + AT_rich Low_complexity Low_complexity 1 31 0 2 1283 1133 43 0 0 chr6 91616889 91617030 -57900007 + B1_Mus2 SINE Alu 1 141 -6 2 1283 486 0 0 0 chr6 91617032 91617086 -57899951 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 2 1283 276 273 88 33 chr6 91617098 91617189 -57899848 - B1F2 SINE Alu -27 122 27 2 1283 1007 59 81 0 chr6 91617368 91617504 -57899533 + B1_Mus2 SINE Alu 1 147 0 2 1283 269 249 0 63 chr6 91617604 91617793 -57899244 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 2 1283 274 279 0 0 chr6 91617794 91617873 -57899164 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 1283 466 222 37 9 chr6 91618323 91618432 -57898605 + RSINE1 SINE B4 11 122 -43 2 1283 384 183 308 0 chr6 91618787 91618891 -57898146 + ID_B1 SINE B4 89 224 0 2 160 1738 206 34 17 chr6 91619183 91619539 -57897498 + MTE2b LTR MaLR 18 379 0 2 1284 252 0 0 0 chr6 91619672 91619700 -57897337 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1284 199 140 0 39 chr6 91619779 91619831 -57897206 + GA-rich Low_complexity Low_complexity 4 53 0 2 1284 316 200 11 11 chr6 91619850 91619941 -57897096 + GA-rich Low_complexity Low_complexity 3 93 0 2 1284 556 219 155 57 chr6 91619960 91620154 -57896883 - B3 SINE B2 0 216 4 2 1284 198 71 0 0 chr6 91620291 91620319 -57896718 + (CCCCCA)n Simple_repeat Simple_repeat 2 29 0 2 1284 1201 21 0 0 chr6 91620714 91620854 -57896183 + B1_Mm SINE Alu 1 140 -7 2 1284 536 0 16 0 chr6 91620856 91620920 -57896117 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1284 562 218 23 0 chr6 91620952 91621031 -57896006 + ID SINE ID 1 82 -142 2 1284 245 312 10 40 chr6 91621031 91621131 -57895906 + B1_Mur3 SINE Alu 1 97 -52 2 1284 1225 40 0 0 chr6 91621136 91621284 -57895753 + B1_Mus1 SINE Alu 1 148 0 2 1284 261 0 0 0 chr6 91621391 91621420 -57895617 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 2 1284 764 193 0 0 chr6 91621420 91621555 -57895482 - B1_Mus2 SINE Alu -11 136 2 2 1284 269 98 0 0 chr6 91622232 91622273 -57894764 - ID SINE ID -183 41 1 2 1284 226 185 0 30 chr6 91622296 91622348 -57894689 + (TTTG)n Simple_repeat Simple_repeat 4 53 0 2 1284 234 0 0 0 chr6 91622348 91622374 -57894663 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1284 226 185 0 30 chr6 91622374 91622388 -57894649 + (TTTG)n Simple_repeat Simple_repeat 2 15 0 2 1284 538 216 8 8 chr6 91622388 91622505 -57894532 - PB1D9 SINE Alu -1 119 3 2 1284 350 127 14 0 chr6 91622637 91622708 -57894329 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1284 1251 70 0 6 chr6 91622718 91622890 -57894147 - B2_Mm2 SINE B2 -24 171 1 2 1284 720 267 0 37 chr6 91622959 91623146 -57893891 + ID_B1 SINE B4 43 222 -2 2 1284 389 291 63 0 chr6 91624594 91624721 -57892316 - ID_B1 SINE B4 -2 222 88 3 1284 204 311 64 28 chr6 91624902 91625011 -57892026 - MIRb SINE MIR -122 146 34 3 1284 180 333 114 26 chr6 91625477 91625534 -57891503 + MER5B DNA MER1_type 7 66 -112 3 1284 428 236 45 45 chr6 91625534 91625645 -57891392 + PB1D7 SINE Alu 1 111 -9 3 1284 180 333 114 26 chr6 91625645 91625701 -57891336 + MER5B DNA MER1_type 67 130 -48 3 1284 983 124 0 0 chr6 91625759 91625904 -57891133 - B1_Mus2 SINE Alu 0 147 3 3 1284 227 241 0 0 chr6 91625910 91625964 -57891073 - B1_Mur4 SINE Alu 0 150 97 3 1284 569 211 40 60 chr6 91625988 91626031 -57891006 - B1_Mur3 SINE Alu -1 148 108 3 1284 1186 61 0 0 chr6 91626031 91626178 -57890859 - B1_Mus1 SINE Alu 0 148 2 3 1284 657 163 1 1 chr6 91626178 91626285 -57890752 - B1F2 SINE Alu -42 107 1 3 1284 535 215 0 116 chr6 91626285 91626327 -57890710 - ID SINE ID -146 78 54 3 1284 791 248 58 48 chr6 91626425 91626633 -57890404 + B3 SINE B2 1 210 -6 3 1284 208 317 57 24 chr6 91626676 91626799 -57890238 - MER5A DNA MER1_type 0 189 63 3 1284 513 0 0 0 chr6 91627645 91627702 -57889335 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1284 265 233 0 48 chr6 91627718 91627781 -57889256 - RSINE1 SINE B4 -69 96 37 3 1284 281 240 51 20 chr6 91627966 91628064 -57888973 - MER2 DNA MER2_type -150 195 95 3 1284 226 315 84 32 chr6 91628076 91628090 -57888947 - B4A SINE B4 -191 101 2 3 1284 338 288 0 12 chr6 91628090 91628171 -57888866 - ID4_ SINE ID -2 81 2 3 1284 616 258 22 6 chr6 91628234 91628413 -57888624 - B3A SINE B2 -16 182 1 3 1284 340 308 102 69 chr6 91628764 91628980 -57888057 - L1M5 LINE L1 -677 5767 5545 3 1284 195 391 10 61 chr6 91629451 91629647 -57887390 - MIR SINE MIR -32 230 45 3 1284 192 77 0 0 chr6 91630554 91630580 -57886457 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 3 1284 286 260 197 38 chr6 91630584 91630716 -57886321 - RSINE1 SINE B4 -10 155 3 3 1284 460 161 17 8 chr6 91630786 91630905 -57886132 + (TCTG)n Simple_repeat Simple_repeat 1 120 0 3 1284 378 91 0 0 chr6 91630921 91630976 -57886061 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1284 611 294 31 6 chr6 91630978 91631139 -57885898 - B3A SINE B2 -33 165 1 3 1284 198 0 0 0 chr6 91631143 91631165 -57885872 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 3 1284 438 259 78 0 chr6 91631169 91631285 -57885752 - ID_B1 SINE B4 -6 218 94 3 1284 523 259 76 0 chr6 91631300 91631431 -57885606 - B1_Mur2 SINE Alu -6 143 3 3 1284 250 165 22 45 chr6 91631453 91631542 -57885495 + (TTA)n Simple_repeat Simple_repeat 3 89 0 3 1284 687 112 128 0 chr6 91631546 91631671 -57885366 - B1_Mur3 SINE Alu 0 149 9 3 1284 210 287 75 47 chr6 91631686 91631792 -57885245 - PB1 SINE Alu 0 127 19 3 1284 419 329 28 7 chr6 91632027 91632168 -57884869 + MIR SINE MIR 40 183 -79 3 1284 312 359 0 25 chr6 91632268 91632388 -57884649 + PB1 SINE Alu 11 127 0 3 1284 191 290 120 0 chr6 91632431 91632531 -57884506 - L2b LINE L2 -24 3351 3240 3 1284 753 132 65 14 chr6 91632885 91633023 -57884014 - B1_Mur4 SINE Alu 0 150 6 3 1284 595 285 45 40 chr6 91633337 91633538 -57883499 - MIR SINE MIR -8 254 53 3 1284 252 0 0 0 chr6 91633559 91633587 -57883450 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 3 1284 372 94 0 0 chr6 91633930 91633983 -57883054 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1284 21 0 0 0 chr6 91633983 91634004 -57883033 + GC_rich Low_complexity Low_complexity 1 21 0 3 1284 378 0 0 0 chr6 91634508 91634550 -57882487 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1284 333 0 0 0 chr6 91634718 91634755 -57882282 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1284 29 28 0 0 chr6 91635517 91635553 -57881484 + AT_rich Low_complexity Low_complexity 1 36 0 3 1284 238 208 215 2 chr6 91635791 91635881 -57881156 + MIRc SINE MIR 53 157 -51 3 1284 1160 61 0 0 chr6 91637060 91637207 -57879830 - B1_Mus1 SINE Alu 0 148 2 3 1284 1666 16 0 0 chr6 91637260 91637453 -57879584 + B2_Mm1a SINE B2 1 193 0 3 1284 387 0 0 0 chr6 91638288 91638331 -57878706 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1284 470 266 18 0 chr6 91638354 91638463 -57878574 - B1F SINE Alu -37 112 2 3 1284 257 248 238 8 chr6 91638473 91638599 -57878438 + RSINE1 SINE B4 11 165 0 3 1284 243 0 0 0 chr6 91638701 91638728 -57878309 + (TTAAA)n Simple_repeat Simple_repeat 4 30 0 3 1284 301 273 15 0 chr6 91638857 91638923 -57878114 - B4A SINE B4 -2 290 224 3 1284 272 70 23 0 chr6 91638927 91638970 -57878067 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1284 305 312 73 59 chr6 91638980 91639266 -57877771 - B4A SINE B4 -2 290 1 3 1284 290 200 79 13 chr6 91639278 91639354 -57877683 - ID2 SINE ID -1 82 2 3 1284 339 260 53 40 chr6 91639565 91639717 -57877320 + Tigger7 DNA MER2_type 2281 2434 -57 3 1284 201 121 0 0 chr6 91640245 91640278 -57876759 + (CAGC)n Simple_repeat Simple_repeat 3 35 0 3 1284 300 212 38 29 chr6 91640554 91640646 -57876391 - PB1 SINE Alu -14 103 10 3 1284 294 339 18 0 chr6 91640655 91640766 -57876271 - L2a LINE L2 -14 3412 3245 3 1284 412 274 0 0 chr6 91643698 91643793 -57873244 + B3 SINE B2 36 130 -86 3 1284 513 185 83 0 chr6 91644273 91644381 -57872656 - PB1D10 SINE Alu 0 117 1 3 1284 215 309 20 50 chr6 91644472 91644571 -57872466 + PB1 SINE Alu 7 102 -25 3 1284 193 309 112 28 chr6 91645265 91645408 -57871629 + MER5A DNA MER1_type 6 160 -29 3 1284 223 154 0 0 chr6 91645671 91645710 -57871327 + CT-rich Low_complexity Low_complexity 2 40 0 3 1284 276 30 0 0 chr6 91645710 91645743 -57871294 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1284 254 227 30 0 chr6 91645743 91645809 -57871228 - ID2 SINE ID -11 72 5 3 1284 823 258 0 21 chr6 91645843 91646033 -57871004 - B3A SINE B2 -10 188 3 3 1284 430 264 0 0 chr6 91646047 91646153 -57870884 - PB1D10 SINE Alu -7 110 5 3 1284 326 306 103 30 chr6 91646173 91646338 -57870699 - MLT1K LTR MaLR -36 559 383 3 1284 210 37 0 0 chr6 91646412 91646439 -57870598 + (TCC)n Simple_repeat Simple_repeat 2 28 0 3 1284 451 263 47 77 chr6 91646476 91646645 -57870392 - RSINE1 SINE B4 0 165 2 3 1284 236 189 66 60 chr6 91647216 91647305 -57869732 + L2a LINE L2 3294 3416 -10 3 1284 29 0 0 0 chr6 91648283 91648312 -57868725 + AT_rich Low_complexity Low_complexity 1 29 0 3 1284 614 266 12 53 chr6 91648319 91648490 -57868547 - RSINE1 SINE B4 0 165 2 3 1284 471 155 29 0 chr6 91648645 91648748 -57868289 + GA-rich Low_complexity Low_complexity 1 106 0 3 1284 588 50 0 0 chr6 91649330 91649410 -57867627 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1284 538 273 39 0 chr6 91649598 91649752 -57867285 - L1MC4 LINE L1 -143 7899 7740 3 1284 219 247 117 52 chr6 91650729 91650806 -57866231 - MIRb SINE MIR -102 166 85 3 1284 251 240 26 13 chr6 91651467 91651543 -57865494 + MIRb SINE MIR 89 165 -103 3 1284 279 248 95 40 chr6 91651952 91652078 -57864959 + B1F2 SINE Alu 1 133 -16 3 1284 345 24 0 0 chr6 91652096 91652138 -57864899 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 1284 362 185 111 0 chr6 91652171 91652252 -57864785 + B1_Mur3 SINE Alu 41 130 -19 3 1284 300 247 12 12 chr6 91652283 91652369 -57864668 - PB1 SINE Alu -17 110 25 3 1284 227 312 53 35 chr6 91652575 91652587 -57864450 + B4 SINE B4 80 93 -199 3 1284 473 224 19 6 chr6 91652587 91652701 -57864336 + B1F1 SINE Alu 3 112 -5 3 1284 217 312 73 0 chr6 91653460 91653569 -57863468 + MIRb SINE MIR 144 260 -8 3 1284 186 353 47 0 chr6 91653668 91653753 -57863284 - MIRb SINE MIR -74 194 106 3 1284 203 242 65 0 chr6 91654118 91654180 -57862857 + MIR SINE MIR 88 153 -55 3 1284 1136 82 0 0 chr6 91655069 91655216 -57861821 - B1_Mus1 SINE Alu -1 147 1 3 1284 499 250 0 9 chr6 91655382 91655495 -57861542 - PB1D7 SINE Alu -8 112 1 3 1284 263 246 220 0 chr6 91655801 91655819 -57861218 + B1F SINE Alu 5 148 -1 3 1284 359 220 130 0 chr6 91655819 91655919 -57861118 + ID_B1 SINE B4 110 222 -2 3 1284 216 246 15 15 chr6 91656063 91656129 -57860908 - ID4_ SINE ID -10 73 8 3 1284 203 88 29 0 chr6 91656776 91656810 -57860227 + (CGGGGG)n Simple_repeat Simple_repeat 2 36 0 3 1284 286 314 76 13 chr6 91657903 91658061 -57858976 + MIRb SINE MIR 22 189 -79 3 1284 362 209 7 22 chr6 91658724 91658861 -57858176 + CT-rich Low_complexity Low_complexity 1 135 0 3 1284 227 427 0 26 chr6 91658922 91659035 -57858002 + RMER12 LTR ERVK 742 851 -471 3 1284 579 242 141 0 chr6 91659050 91659199 -57857838 - B3 SINE B2 -34 182 13 3 1284 297 49 0 0 chr6 91659251 91659274 -57857763 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1284 1215 34 0 0 chr6 91659274 91659421 -57857616 - B1_Mm SINE Alu 0 147 1 3 1284 297 49 0 0 chr6 91659421 91659438 -57857599 + (T)n Simple_repeat Simple_repeat 1 17 0 3 1284 245 174 100 14 chr6 91659506 91659576 -57857461 + ID4_ SINE ID 2 77 -6 3 1284 399 41 0 0 chr6 91660060 91660109 -57856928 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1284 418 70 66 53 chr6 91660352 91660428 -57856609 + B1_Mur4 SINE Alu 74 150 0 3 1284 234 222 0 53 chr6 91661062 91661119 -57855918 + 4.5SRNA scRNA scRNA 33 86 -8 4 1284 493 231 0 0 chr6 91661071 91661162 -57855875 + B1_Mur1 SINE Alu 44 134 -15 4 1284 198 0 0 0 chr6 91661164 91661186 -57855851 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 4 1284 207 0 0 0 chr6 91662083 91662106 -57854931 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 4 1284 198 0 0 0 chr6 91662509 91662531 -57854506 + (ATTG)n Simple_repeat Simple_repeat 1 22 0 4 1284 222 279 71 29 chr6 91662603 91662737 -57854300 - MIR3 SINE MIR -29 179 46 4 1284 221 158 0 26 chr6 91663096 91663135 -57853902 + G-rich Low_complexity Low_complexity 6 43 0 4 1284 226 138 40 50 chr6 91663361 91663460 -57853577 + CT-rich Low_complexity Low_complexity 5 102 0 4 1284 252 0 0 0 chr6 91664241 91664269 -57852768 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1284 1146 36 0 0 chr6 91664271 91664411 -57852626 - B1_Mus1 SINE Alu -7 141 2 4 1284 888 171 0 0 chr6 91664416 91664562 -57852475 - B1_Mur1 SINE Alu -1 148 3 4 1284 692 62 0 20 chr6 91664565 91664664 -57852373 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 4 1284 315 0 0 0 chr6 91665344 91665379 -57851658 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1284 459 0 0 0 chr6 91665451 91665502 -57851535 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1284 1086 68 7 0 chr6 91665507 91665653 -57851384 - B1_Mus1 SINE Alu 0 148 2 4 1284 475 246 44 0 chr6 91665936 91666050 -57850987 - ID_B1 SINE B4 0 224 106 4 1284 30 27 0 0 chr6 91666494 91666531 -57850506 + AT_rich Low_complexity Low_complexity 1 37 0 4 1284 368 288 166 0 chr6 91666536 91666675 -57850362 - RSINE1 SINE B4 0 165 4 4 1284 269 151 19 0 chr6 91666684 91666737 -57850300 + CT-rich Low_complexity Low_complexity 3 56 0 4 1284 889 162 125 5 chr6 91666753 91666945 -57850092 - B3 SINE B2 0 216 2 4 1284 252 305 76 23 chr6 91667027 91667158 -57849879 + MIR3 SINE MIR 22 159 -49 4 1284 843 180 181 20 chr6 91667231 91667433 -57849604 - B3 SINE B2 0 216 6 4 1284 566 181 173 0 chr6 91667455 91667582 -57849455 - B1F1 SINE Alu 0 149 1 4 1284 954 227 24 15 chr6 91667655 91667861 -57849176 - B3 SINE B2 -5 211 4 4 1284 342 0 0 0 chr6 91667980 91668018 -57849019 + (TTA)n Simple_repeat Simple_repeat 2 39 0 4 1284 207 233 50 0 chr6 91668023 91668083 -57848954 - MIR SINE MIR -121 141 79 4 1284 183 326 47 0 chr6 91668295 91668381 -57848656 - L2b LINE L2 -10 3365 3276 4 1284 1032 167 19 47 chr6 91668872 91669086 -57847951 + ID_B1 SINE B4 4 211 -13 4 1284 387 286 96 12 chr6 91669802 91669968 -57847069 - MIR SINE MIR -14 248 69 4 1284 232 291 143 17 chr6 91670188 91670284 -57846753 - L2b LINE L2 -623 2796 2694 4 1284 477 0 0 0 chr6 91670284 91670337 -57846700 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 1284 232 291 143 17 chr6 91670337 91670415 -57846622 - L2b LINE L2 -726 2693 2600 4 1284 611 92 27 9 chr6 91671088 91671198 -57845839 + (TCC)n Simple_repeat Simple_repeat 2 113 0 4 1284 231 338 80 40 chr6 91671912 91672063 -57844974 - Charlie8 DNA MER1_type -2185 243 87 4 1284 322 325 39 19 chr6 91674227 91674381 -57842656 - Charlie4z DNA MER1_type -6 161 5 4 1284 219 348 171 1 chr6 91675221 91675361 -57841676 + MIRb SINE MIR 28 195 -73 4 1284 676 225 3 25 chr6 91675367 91675661 -57841376 + (TCCA)n Simple_repeat Simple_repeat 1 287 0 4 1284 261 0 0 0 chr6 91675661 91675690 -57841347 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 4 1284 326 306 0 61 chr6 91675690 91675769 -57841268 + (TCCA)n Simple_repeat Simple_repeat 1 76 0 4 1284 300 299 51 74 chr6 91676385 91676522 -57840515 + MIRb SINE MIR 48 178 -84 4 1284 406 264 54 0 chr6 91676651 91676780 -57840257 - MLT1H LTR MaLR 0 549 414 4 1284 428 312 28 48 chr6 91678482 91678627 -57838410 - RSINE1 SINE B4 -19 146 5 4 1284 236 295 112 37 chr6 91680379 91680513 -57836524 - L2c LINE L2 -4 3383 3240 4 1284 318 185 46 36 chr6 91681279 91681385 -57835652 + PB1D10 SINE Alu 18 120 0 4 1284 450 0 0 0 chr6 91682539 91682589 -57834448 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1284 899 243 6 0 chr6 91682624 91682805 -57834232 - B3 SINE B2 -34 182 1 4 1284 329 223 243 0 chr6 91682862 91683010 -57834027 + MIRb SINE MIR 19 202 -66 4 1284 208 360 80 0 chr6 91683210 91683285 -57833752 - L2a LINE L2 -2 3424 3344 4 1284 183 139 0 0 chr6 91684106 91684142 -57832895 + (TTG)n Simple_repeat Simple_repeat 1 36 0 4 1284 464 206 83 9 chr6 91684148 91684256 -57832781 - PB1D10 SINE Alu -1 116 1 4 1284 315 245 105 11 chr6 91684313 91684408 -57832629 - MIRb SINE MIR -117 151 48 4 1284 513 115 0 0 chr6 91684476 91684554 -57832483 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1284 429 282 18 0 chr6 91684555 91684665 -57832372 - RSINE1 SINE B4 -42 123 12 4 1284 277 161 89 0 chr6 91684672 91684728 -57832309 - MIRc SINE MIR -118 150 90 4 1284 246 132 0 0 chr6 91684772 91684825 -57832212 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 4 1284 675 189 23 8 chr6 91684838 91684971 -57832066 - B1F SINE Alu 0 149 15 4 1284 555 302 55 36 chr6 91684971 91685058 -57831979 - ID_B1 SINE B4 0 224 1 4 1284 199 282 181 18 chr6 91686233 91686399 -57830638 - L2a LINE L2 -218 3208 3016 4 1284 389 233 64 14 chr6 91686992 91687132 -57829905 - MIR SINE MIR -72 196 34 4 1284 257 291 40 57 chr6 91687297 91687421 -57829616 + MIR SINE MIR 18 139 -69 4 1284 185 314 91 73 chr6 91687864 91688029 -57829008 + MIR SINE MIR 46 213 -49 4 1284 381 143 128 13 chr6 91689112 91689190 -57827847 - PB1D7 SINE Alu -20 100 14 4 1284 261 278 99 11 chr6 91689114 91689205 -57827832 - ID_B1 SINE B4 -48 176 78 4 1284 729 260 96 10 chr6 91689208 91689406 -57827631 - B3 SINE B2 0 216 2 4 1284 22 0 0 0 chr6 91693843 91693865 -57823172 + GC_rich Low_complexity Low_complexity 1 22 0 4 1284 197 273 0 29 chr6 91695618 91695686 -57821351 + MIRm SINE MIR 86 151 -125 4 1284 474 301 75 33 chr6 91697232 91697445 -57819592 - ID_B1 SINE B4 0 224 3 4 1284 330 376 15 15 chr6 91697595 91697730 -57819307 + L1MC4a LINE L1 5760 5894 -1988 4 1284 234 0 0 0 chr6 91697758 91697784 -57819253 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1284 806 202 202 0 chr6 91699001 91699179 -57817858 + B3 SINE B2 3 216 0 4 1284 240 325 25 25 chr6 91699378 91699457 -57817580 - B1F SINE Alu -69 80 2 4 1284 314 333 82 38 chr6 91699464 91699648 -57817389 - L1MEe LINE L1 -4041 813 622 4 1284 1051 175 0 0 chr6 91701680 91701857 -57815180 + URR1B DNA MER1_type 49 225 0 4 1284 334 237 241 17 chr6 91703515 91703631 -57813406 - B1F SINE Alu -7 142 1 4 1284 191 146 0 24 chr6 91705182 91705224 -57811813 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1284 208 147 0 0 chr6 91705484 91705518 -57811519 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1284 428 51 17 0 chr6 91708733 91708792 -57808245 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1284 249 152 0 0 chr6 91709137 91709183 -57807854 + B3A SINE B2 1 46 -152 4 1284 382 242 159 16 chr6 91709177 91709303 -57807734 - B4 SINE B4 -66 226 83 4 1284 583 229 21 21 chr6 91709310 91709453 -57807584 - B3 SINE B2 -56 160 18 4 1284 276 296 144 30 chr6 91710363 91710530 -57806507 + MIRb SINE MIR 52 237 -31 4 1284 419 212 0 12 chr6 91711047 91711133 -57805904 - B3A SINE B2 -113 85 1 4 1284 1058 191 31 79 chr6 91711159 91711386 -57805651 - B3 SINE B2 0 216 1 4 1284 225 0 0 0 chr6 91711398 91711423 -57805614 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 4 1284 193 262 0 0 chr6 91712054 91712096 -57804941 - MIRc SINE MIR -143 125 84 4 1284 752 245 104 16 chr6 91713680 91713790 -57803247 + RMER5 LTR ERV1 68 189 -345 4 1284 1436 51 51 0 chr6 91713790 91713968 -57803069 - B2_Mm2 SINE B2 -6 189 3 4 1284 752 245 104 16 chr6 91713968 91714106 -57802931 + RMER5 LTR ERV1 190 338 -196 4 1284 219 36 0 0 chr6 91714107 91714135 -57802902 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1284 232 233 92 0 chr6 91714359 91714440 -57802597 + MLT1J2 LTR MaLR 72 187 -325 4 1284 473 256 16 24 chr6 91716600 91716724 -57800313 + B4A SINE B4 107 229 -63 4 1284 822 205 44 89 chr6 91716726 91716951 -57800086 + B3 SINE B2 2 216 0 4 1284 1114 82 0 13 chr6 91716961 91717110 -57799927 - B1_Mus1 SINE Alu 0 148 2 4 1284 246 176 0 0 chr6 91717221 91717272 -57799765 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1284 717 184 5 27 chr6 91717286 91717470 -57799567 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1284 7458 55 0 1 chr6 91718292 91719258 -57797779 + L1Md_F2 LINE L1 4621 5585 -298 4 1284 8780 25 3 0 chr6 91719259 91720302 -57796735 + L1Md_F2 LINE L1 5587 6582 0 4 1284 1605 226 70 5 chr6 91720716 91721086 -57795951 + MTD LTR MaLR 26 419 0 4 1284 239 273 0 38 chr6 91721184 91721264 -57795773 + L1M4 LINE L1 2962 3038 -3108 4 1284 822 94 0 0 chr6 91721306 91721423 -57795614 + (CA)n Simple_repeat Simple_repeat 2 118 0 4 1284 315 0 0 0 chr6 91721423 91721457 -57795580 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1284 189 107 0 0 chr6 91721610 91721638 -57795399 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 4 1284 839 279 69 0 chr6 91721939 91722186 -57794851 + MTEa LTR MaLR 16 279 -100 4 1284 340 302 7 80 chr6 91722236 91722373 -57794664 - B4A SINE B4 0 292 166 4 1284 335 127 3 3 chr6 91722454 91722518 -57794519 + MTEa LTR MaLR 311 374 -5 4 1284 222 114 68 0 chr6 91723017 91723061 -57793976 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 4 1284 185 274 143 0 chr6 91724422 91724506 -57792531 - MIRm SINE MIR -9 267 172 4 1284 201 250 18 18 chr6 91725706 91725763 -57791274 + GA-rich Low_complexity Low_complexity 4 60 0 5 1284 217 208 78 65 chr6 91725851 91725928 -57791109 - PB1D10 SINE Alu -2 115 38 5 1284 300 191 42 116 chr6 91725934 91726029 -57791008 + MT2B LTR ERVL 153 240 -361 5 1284 616 175 0 0 chr6 91725953 91726056 -57790981 + B1_Mur2 SINE Alu 10 112 -37 5 1284 235 255 151 0 chr6 91726085 91726191 -57790846 + Lx8 LINE L1 5797 5918 -1555 5 1284 199 50 24 48 chr6 91727692 91727734 -57789303 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1284 184 261 11 11 chr6 91727813 91727906 -57789131 + GA-rich Low_complexity Low_complexity 6 98 0 5 1284 1402 153 5 0 chr6 91727922 91728137 -57788900 + B3 SINE B2 1 216 0 5 1284 266 288 62 32 chr6 91728958 91729113 -57787924 + MIR SINE MIR 35 212 -56 5 1284 1055 311 77 69 chr6 91730782 91731004 -57786033 - MER44B DNA MER2_type -7 543 329 5 1284 703 288 50 45 chr6 91731004 91731226 -57785811 - ID_B1 SINE B4 -1 223 1 5 1284 1055 311 77 69 chr6 91731226 91731522 -57785515 - MER44B DNA MER2_type -222 328 21 5 1284 788 205 29 23 chr6 91731599 91731627 -57785410 - B3A SINE B2 -6 192 163 5 1284 399 21 0 0 chr6 91731627 91731675 -57785362 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1284 788 205 29 23 chr6 91731675 91731821 -57785216 - B3A SINE B2 -36 162 19 5 1284 344 213 27 0 chr6 91731935 91732010 -57785027 + PB1D10 SINE Alu 41 117 0 5 1284 317 252 93 36 chr6 91732061 91732201 -57784836 - L1MB8 LINE L1 -192 5986 5839 5 1284 486 0 0 0 chr6 91734406 91734460 -57782577 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1284 230 283 97 11 chr6 91734571 91734664 -57782373 - MIR SINE MIR -86 122 22 5 1284 534 268 0 16 chr6 91736101 91736226 -57780811 + RSINE1 SINE B4 3 125 -40 5 1284 459 0 0 0 chr6 91736227 91736278 -57780759 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1284 222 286 34 51 chr6 91738667 91738785 -57778252 - MIRb SINE MIR -103 165 50 5 1284 365 262 65 0 chr6 91739194 91739301 -57777736 + ID_B1 SINE B4 91 204 -20 5 1284 315 0 0 0 chr6 91739301 91739336 -57777701 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 1284 341 298 136 52 chr6 91739417 91739608 -57777429 + MER2 DNA MER2_type 1 207 -138 5 1284 235 289 120 26 chr6 91739762 91739879 -57777158 - MER2 DNA MER2_type -215 130 3 5 1284 242 210 71 36 chr6 91740270 91740354 -57776683 - MIRc SINE MIR -66 202 116 5 1284 327 291 105 13 chr6 91740864 91741017 -57776020 - MER20 DNA MER1_type -52 167 1 5 1284 22 0 0 0 chr6 91741187 91741209 -57775828 + AT_rich Low_complexity Low_complexity 1 22 0 5 1284 622 193 24 2 chr6 91741758 91741906 -57775131 + B4A SINE B4 1 150 -142 5 1284 193 98 45 68 chr6 91743159 91743203 -57773834 - MIR SINE MIR -126 136 94 5 1284 325 348 81 11 chr6 91743209 91743395 -57773642 - MIR SINE MIR -29 233 35 5 1284 279 296 75 43 chr6 91744010 91744197 -57772840 + L2a LINE L2 3056 3248 -178 5 1284 254 238 214 0 chr6 91744944 91745028 -57772009 + MLT1K LTR MaLR 198 299 -296 5 1284 318 50 0 0 chr6 91745048 91745088 -57771949 + (GGA)n Simple_repeat Simple_repeat 3 42 0 5 1284 275 26 0 49 chr6 91745716 91745757 -57771280 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 5 1284 252 233 163 0 chr6 91746541 91746627 -57770410 + MIRc SINE MIR 94 193 -75 5 1284 193 274 20 0 chr6 91746770 91746821 -57770216 + MIRm SINE MIR 116 167 -109 5 160 185 288 149 14 chr6 91750337 91750411 -57766626 + MIRb SINE MIR 115 198 -70 5 1285 242 365 24 17 chr6 91750552 91750702 -57766335 - L2b LINE L2 -5 3421 3262 5 1285 747 167 0 0 chr6 91750981 91751119 -57765918 + (CA)n Simple_repeat Simple_repeat 1 138 0 5 1285 344 329 63 23 chr6 91752049 91752263 -57764774 - MIR SINE MIR -8 254 34 5 1285 262 255 162 9 chr6 91754179 91754290 -57762747 - MIR3 SINE MIR -71 137 10 5 1285 306 375 58 4 chr6 91754839 91755064 -57761973 + MIRb SINE MIR 22 258 -10 5 1285 429 276 164 0 chr6 91755760 91755894 -57761143 + RSINE1 SINE B4 5 160 -5 5 1285 389 261 0 122 chr6 91755995 91756126 -57760911 + B3A SINE B2 18 132 -66 5 1285 362 195 39 0 chr6 91756186 91756263 -57760774 + MIRm SINE MIR 83 162 -114 5 1285 437 0 19 0 chr6 91756673 91756726 -57760311 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1285 230 277 199 0 chr6 91757877 91758018 -57759019 - MIRb SINE MIR -37 231 63 5 1285 189 248 129 0 chr6 91758866 91758956 -57758081 + MIR SINE MIR 58 169 -99 5 1285 555 225 56 0 chr6 91759224 91759366 -57757671 - MIRb SINE MIR -68 200 51 5 1285 920 146 15 0 chr6 91759388 91759525 -57757512 + B1_Mur4 SINE Alu 2 140 -10 5 1285 250 279 179 13 chr6 91760230 91760386 -57756651 - L2a LINE L2 -2 3424 3243 5 1285 340 271 42 38 chr6 91760547 91760698 -57756339 + L1MC4 LINE L1 6818 7001 -1041 5 1285 854 177 14 0 chr6 91762017 91762158 -57754879 + B1_Mur4 SINE Alu 3 145 -5 5 1285 1215 54 0 0 chr6 91762622 91762769 -57754268 + B1_Mus1 SINE Alu 2 148 0 5 1285 192 111 0 0 chr6 91762769 91762805 -57754232 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 5 1285 1888 102 26 42 chr6 91764315 91764704 -57752333 + ORR1A2 LTR MaLR 1 338 -8 5 1285 185 310 0 17 chr6 91764713 91764772 -57752265 - MIR SINE MIR -96 166 109 5 1285 1172 116 115 5 chr6 91764848 91765048 -57751989 - URR1A DNA MER1_type 0 226 5 5 1285 237 296 42 0 chr6 91765248 91765319 -57751718 - MIRb SINE MIR -137 131 58 5 1285 240 310 68 37 chr6 91765359 91765520 -57751517 - MIR SINE MIR -61 201 36 5 1285 229 164 34 68 chr6 91766278 91766337 -57750700 - MER20 DNA MER1_type -156 63 7 5 1285 338 139 0 14 chr6 91766352 91766425 -57750612 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1285 338 260 65 34 chr6 91766964 91767115 -57749922 + L1ME3B LINE L1 5468 5618 -555 5 1285 1058 98 110 0 chr6 91767130 91767293 -57749744 + B2_Mm2 SINE B2 1 181 -14 5 1285 870 134 104 0 chr6 91767402 91767536 -57749501 + B1_Mus1 SINE Alu 1 148 0 5 1285 495 244 17 34 chr6 91767570 91767689 -57749348 + PB1D10 SINE Alu 1 117 0 5 1285 180 0 0 0 chr6 91767695 91767715 -57749322 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1285 318 354 141 19 chr6 91767720 91768040 -57748997 + L1ME3B LINE L1 5699 6057 -183 5 1285 423 328 24 0 chr6 91768422 91768547 -57748490 - B4 SINE B4 -151 141 14 5 1285 762 266 67 26 chr6 91768603 91768873 -57748164 - B4A SINE B4 -11 281 1 5 1285 370 169 14 27 chr6 91768892 91768911 -57748126 - PB1D7 SINE Alu 0 120 101 5 1285 522 31 0 0 chr6 91768911 91768975 -57748062 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1285 370 169 14 27 chr6 91768975 91769028 -57748009 - PB1D7 SINE Alu -20 100 49 5 1285 232 216 0 63 chr6 91769663 91769742 -57747295 + (CAGAGA)n Simple_repeat Simple_repeat 3 76 0 5 1285 735 165 0 0 chr6 91769773 91769906 -57747131 + (CAGAGA)n Simple_repeat Simple_repeat 5 137 0 5 1285 734 120 0 0 chr6 91769915 91770023 -57747014 + B1_Mur2 SINE Alu 42 149 0 5 1285 316 282 62 18 chr6 91770249 91770361 -57746676 + MLT1A1 LTR MaLR 292 408 0 5 1285 1481 68 21 5 chr6 91770537 91770729 -57746308 - B2_Mm2 SINE B2 0 195 1 5 1285 1579 227 48 11 chr6 91771059 91771416 -57745621 - ORR1D2 LTR MaLR 0 370 1 5 1285 1535 52 0 25 chr6 91772002 91772198 -57744839 + B2_Mm2 SINE B2 1 191 -4 5 1285 453 62 0 0 chr6 91773089 91773154 -57743883 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1285 244 263 0 13 chr6 91773461 91773538 -57743499 + RMER21B LTR ERV1 124 199 -643 5 1285 556 174 270 34 chr6 91773575 91773753 -57743284 + RMER21B LTR ERV1 348 567 -275 5 1285 324 0 0 0 chr6 91774701 91774737 -57742300 + (TC)n Simple_repeat Simple_repeat 2 37 0 5 1285 279 0 0 0 chr6 91774737 91774767 -57742270 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1285 638 266 14 0 chr6 91774874 91775017 -57742020 - B3A SINE B2 -51 147 3 5 1285 4232 147 69 164 chr6 91775239 91776234 -57740803 + RMER19B LTR ERVK 2 902 0 5 1285 297 0 0 0 chr6 91777070 91777103 -57739934 + (C)n Simple_repeat Simple_repeat 1 33 0 5 1285 225 275 0 0 chr6 91777539 91777608 -57739429 - MIRm SINE MIR -148 128 57 5 1285 233 190 202 15 chr6 91777847 91777941 -57739096 + MIRm SINE MIR 58 183 -93 5 1285 264 220 69 108 chr6 91780165 91780267 -57736770 - MTE2b LTR MaLR -1 378 281 5 1285 213 65 0 0 chr6 91780327 91780358 -57736679 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1285 681 101 0 0 chr6 91780358 91780457 -57736580 + (TC)n Simple_repeat Simple_repeat 2 100 0 5 1285 360 0 0 0 chr6 91780518 91780558 -57736479 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 5 1285 307 291 48 10 chr6 91780573 91780677 -57736360 - B3A SINE B2 -14 184 77 5 1285 427 172 72 41 chr6 91780713 91780810 -57736227 - RMER10A LTR ERVL -25 417 318 5 1285 360 259 0 12 chr6 91781114 91781196 -57735841 - B3A SINE B2 -116 82 2 5 1285 2211 171 133 10 chr6 91781260 91781757 -57735280 + RLTR31_Mm LTR ERVK 4 561 0 5 1285 1244 85 56 17 chr6 91781999 91782178 -57734859 - B2_Mm2 SINE B2 -7 188 3 5 1285 219 152 0 0 chr6 91782190 91782236 -57734801 + T-rich Low_complexity Low_complexity 1 46 0 5 1285 1150 82 0 13 chr6 91782237 91782386 -57734651 - B1_Mus1 SINE Alu 0 148 2 5 1285 779 42 0 0 chr6 91782475 91782570 -57734467 - BC1_Mm scRNA scRNA -57 95 1 5 1285 792 181 0 7 chr6 91782571 91782710 -57734327 + B1_Mur1 SINE Alu 12 149 0 5 1285 192 111 18 36 chr6 91783568 91783624 -57733413 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 5 1285 603 0 0 0 chr6 91783628 91783695 -57733342 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 5 1285 788 125 58 7 chr6 91783956 91784093 -57732944 - B1_Mur3 SINE Alu -1 148 5 6 1285 227 220 0 0 chr6 91784300 91784350 -57732687 + MTE2b LTR MaLR 330 379 0 6 1285 954 127 14 14 chr6 91784569 91784713 -57732324 - B1_Mur4 SINE Alu -1 149 6 6 1285 405 321 11 74 chr6 91784756 91784931 -57732106 + RSINE1 SINE B4 2 165 0 6 1285 760 239 70 11 chr6 91784964 91785150 -57731887 + B3 SINE B2 15 211 -5 6 1285 762 122 35 9 chr6 91785188 91785304 -57731733 + B1_Mus1 SINE Alu 1 119 -29 6 1285 504 48 0 0 chr6 91785306 91785369 -57731668 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1285 711 131 22 0 chr6 91785372 91785509 -57731528 + GA-rich Low_complexity Low_complexity 2 141 0 6 1285 225 226 0 0 chr6 91785511 91785564 -57731473 + G-rich Low_complexity Low_complexity 4 56 0 6 1285 1051 118 11 11 chr6 91785565 91785745 -57731292 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1285 392 264 111 33 chr6 91786660 91786813 -57730224 + MIRb SINE MIR 5 169 -99 6 1285 504 234 0 0 chr6 91786813 91786907 -57730130 + PB1D10 SINE Alu 1 94 -23 6 1285 319 278 71 44 chr6 91786907 91786926 -57730111 + B4A SINE B4 86 201 -91 6 1285 276 225 41 27 chr6 91786910 91786983 -57730054 + ID SINE ID 10 83 -141 6 1285 257 153 107 40 chr6 91787149 91787224 -57729813 - L1MC LINE L1 -718 5615 5536 6 1285 26 74 0 0 chr6 91787528 91787582 -57729455 + AT_rich Low_complexity Low_complexity 1 54 0 6 1285 25 31 0 0 chr6 91787598 91787630 -57729407 + AT_rich Low_complexity Low_complexity 1 32 0 6 1285 742 205 45 57 chr6 91787630 91787806 -57729231 + B3A SINE B2 1 174 -24 6 1285 238 262 109 80 chr6 91788015 91788152 -57728885 + ORR1A2 LTR MaLR 159 299 -28 6 1285 559 191 0 108 chr6 91788627 91788756 -57728281 - B1_Mur1 SINE Alu -14 135 21 6 1285 198 0 0 0 chr6 91788773 91788795 -57728242 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1285 321 26 0 0 chr6 91790782 91790820 -57726217 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1285 294 106 0 0 chr6 91790822 91790869 -57726168 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1285 1385 226 81 50 chr6 91791423 91791820 -57725217 + MTD LTR MaLR 11 419 0 6 1285 498 301 30 24 chr6 91792923 91793090 -57723947 + MIRb SINE MIR 25 192 -76 6 1285 26 50 0 0 chr6 91793737 91793777 -57723260 + GC_rich Low_complexity Low_complexity 1 40 0 6 1285 204 93 22 44 chr6 91793918 91793963 -57723074 + (CGGGG)n Simple_repeat Simple_repeat 4 47 0 6 1285 365 229 6 24 chr6 91794079 91794249 -57722788 + (TGAA)n Simple_repeat Simple_repeat 4 170 0 6 1285 224 262 19 0 chr6 91794260 91794367 -57722670 + (TGAA)n Simple_repeat Simple_repeat 3 111 0 6 1285 218 228 183 13 chr6 91794746 91794887 -57722150 + MIRc SINE MIR 1 174 -102 6 1285 515 308 19 51 chr6 91795035 91795213 -57721824 - MIRb SINE MIR -80 188 15 6 1285 262 348 139 54 chr6 91795666 91795924 -57721113 - MLT1G3 LTR MaLR -3 592 309 6 1285 323 365 83 46 chr6 91795981 91796283 -57720754 - ORR1E LTR MaLR -46 313 1 6 1285 272 337 0 35 chr6 91796296 91796382 -57720655 + Tigger5 DNA MER2_type 1 83 -2323 6 1285 282 333 52 0 chr6 91796482 91796578 -57720459 + Tigger5 DNA MER2_type 2291 2391 -15 6 1285 310 239 60 69 chr6 91796692 91796866 -57720171 + MIR SINE MIR 67 245 -23 6 1285 204 302 16 0 chr6 91797824 91797887 -57719150 + MIRb SINE MIR 5 68 -200 6 1285 309 284 74 0 chr6 91797918 91798013 -57719024 - L2a LINE L2 -17 3409 3308 6 1285 192 306 0 0 chr6 91798054 91798103 -57718934 + MIRm SINE MIR 108 156 -120 6 1285 355 288 25 83 chr6 91798536 91798657 -57718380 - B4 SINE B4 -1 291 178 6 1285 369 308 48 75 chr6 91798903 91799089 -57717948 + ORR1E LTR MaLR 4 184 -175 6 1285 239 319 29 87 chr6 91799144 91799247 -57717790 - MT2B2 LTR ERVL -318 266 170 6 1285 516 209 0 0 chr6 91799157 91799248 -57717789 - B1_Mur3 SINE Alu -54 95 5 6 1285 342 197 155 0 chr6 91799306 91799377 -57717660 - B1_Mur1 SINE Alu -14 135 54 6 1285 1148 88 0 7 chr6 91799380 91799528 -57717509 + B1_Mus1 SINE Alu 2 148 0 6 1285 217 286 0 0 chr6 91799566 91799615 -57717422 - PB1D9 SINE Alu -65 55 7 6 1285 510 316 145 45 chr6 91800018 91800370 -57716667 + L1MEg LINE L1 826 1212 -4872 6 1285 301 257 35 142 chr6 91800374 91800515 -57716522 + L1MA8 LINE L1 5893 6034 -257 6 1285 1198 178 9 14 chr6 91800515 91800726 -57716311 + B3 SINE B2 1 210 -6 6 1285 301 257 35 142 chr6 91800726 91800838 -57716199 + L1MA8 LINE L1 6035 6119 -172 6 1285 782 158 24 0 chr6 91800843 91800970 -57716067 + B1_Mur1 SINE Alu 2 131 -18 6 1285 235 282 135 0 chr6 91801001 91801157 -57715880 + L1MEg LINE L1 1644 1820 -4264 6 1285 722 214 239 26 chr6 91801400 91801626 -57715411 + B4A SINE B4 1 274 -18 6 1285 1269 224 103 20 chr6 91801953 91802303 -57714734 - MTEa LTR MaLR 0 379 1 6 1285 592 196 62 76 chr6 91802331 91802475 -57714562 + ID_B1 SINE B4 82 223 -1 6 1285 330 304 18 18 chr6 91802447 91802561 -57714476 - ORR1E LTR MaLR -245 114 1 6 1285 741 125 18 9 chr6 91803009 91803122 -57713915 + B1_Mur2 SINE Alu 27 140 -9 6 1285 202 253 0 12 chr6 91803138 91803167 -57713870 + A-rich Low_complexity Low_complexity 3 30 0 6 1285 243 0 0 0 chr6 91803167 91803194 -57713843 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1285 202 253 0 12 chr6 91803194 91803248 -57713789 + A-rich Low_complexity Low_complexity 31 84 0 6 1285 462 200 61 35 chr6 91804423 91804537 -57712500 + ORR1D2 LTR MaLR 7 123 -247 6 1285 320 253 115 0 chr6 91804571 91804658 -57712379 - RMER10A LTR ERVL -28 414 318 6 1285 471 63 0 0 chr6 91804867 91804930 -57712107 + (GGGA)n Simple_repeat Simple_repeat 3 65 0 6 1285 259 254 0 73 chr6 91805236 91805304 -57711733 + ORR1D2 LTR MaLR 119 181 -193 6 1285 555 203 75 8 chr6 91805371 91805505 -57711532 + ORR1D2 LTR MaLR 167 309 -61 6 1285 489 91 13 0 chr6 91805526 91805603 -57711434 + B1_Mur4 SINE Alu 73 150 0 6 1285 373 308 101 16 chr6 91806063 91806251 -57710786 - MIR SINE MIR -37 225 22 6 1285 419 169 12 24 chr6 91806925 91807089 -57709948 + (TCTCTG)n Simple_repeat Simple_repeat 2 163 0 6 1285 354 316 110 32 chr6 91807872 91808164 -57708873 + MLT1K LTR MaLR 149 486 -109 6 1285 248 311 22 11 chr6 91808203 91808294 -57708743 + MLT1K LTR MaLR 488 579 -16 6 1285 199 271 17 0 chr6 91808311 91808370 -57708667 - L2b LINE L2 -208 3167 3108 6 1285 248 130 22 0 chr6 91808696 91808742 -57708295 + GA-rich Low_complexity Low_complexity 2 48 0 6 1285 1570 242 84 16 chr6 91809597 91809985 -57707052 - MTD LTR MaLR -14 405 5 6 1285 351 316 140 31 chr6 91810408 91810661 -57706376 - ORR1E LTR MaLR -90 294 32 6 1285 2014 151 186 33 chr6 91810704 91811162 -57705875 - RLTR12B LTR ERVK 0 528 1 6 1285 407 368 48 24 chr6 91811517 91811726 -57705311 - MLT1K LTR MaLR -246 349 136 6 1285 1271 231 75 86 chr6 91812326 91812508 -57704529 - ORR1D2 LTR MaLR 0 370 174 6 1285 333 0 0 0 chr6 91812508 91812545 -57704492 + (CAA)n Simple_repeat Simple_repeat 3 39 0 6 1285 1271 231 75 86 chr6 91812545 91812736 -57704301 - ORR1D2 LTR MaLR -197 173 1 6 1285 382 308 133 13 chr6 91812897 91813055 -57703982 - LTR16C LTR ERVL -160 329 153 6 1285 236 274 118 12 chr6 91815338 91815423 -57701614 + MT2_Mm LTR ERVL 135 228 -265 6 1285 188 135 0 26 chr6 91816078 91816116 -57700921 + CT-rich Low_complexity Low_complexity 3 39 0 6 1285 357 243 14 0 chr6 91816236 91816310 -57700727 - 7SLRNA srpRNA srpRNA -11 303 229 6 1285 491 316 69 66 chr6 91816501 91816789 -57700248 - B4A SINE B4 -2 290 2 6 1285 349 352 35 41 chr6 91816834 91817003 -57700034 + MIRb SINE MIR 20 187 -81 6 1285 399 192 26 0 chr6 91817054 91817132 -57699905 + B4 SINE B4 2 81 -211 6 1285 899 246 10 5 chr6 91817160 91817360 -57699677 + B3 SINE B2 4 204 -12 6 1285 593 202 19 9 chr6 91817418 91817523 -57699514 + B4 SINE B4 118 223 -69 6 1285 228 314 29 29 chr6 91817558 91817663 -57699374 + MT2B2 LTR ERVL 152 256 -328 6 1285 338 307 66 147 chr6 91817623 91817715 -57699322 + B4 SINE B4 18 130 -162 6 1285 354 257 0 0 chr6 91817715 91817789 -57699248 + B3A SINE B2 4 77 -121 6 1285 338 307 66 147 chr6 91817789 91817909 -57699128 + B4 SINE B4 131 280 -12 6 1285 288 221 7 53 chr6 91818184 91818275 -57698762 - MLT1A LTR MaLR -54 320 226 6 1285 301 271 35 12 chr6 91818929 91819015 -57698022 + MIRb SINE MIR 114 201 -67 6 1285 739 171 0 91 chr6 91819017 91819171 -57697866 + B1_Mur2 SINE Alu 5 144 -5 6 1285 338 107 18 0 chr6 91819171 91819227 -57697810 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1285 22 35 0 0 chr6 91819229 91819258 -57697779 + AT_rich Low_complexity Low_complexity 1 29 0 6 1285 389 183 37 186 chr6 91819272 91819354 -57697683 - L1M2 LINE L1 -3012 3131 3060 6 1285 819 221 0 0 chr6 91819354 91819494 -57697543 - B1_Mur1 SINE Alu -7 142 3 6 1285 389 183 37 186 chr6 91819494 91819572 -57697465 - L1M2 LINE L1 -3084 3059 2995 6 1285 1173 277 90 23 chr6 91819572 91819643 -57697394 + L1MA7 LINE L1 5696 5770 -521 6 1285 396 239 28 0 chr6 91819643 91819752 -57697285 + PB1D10 SINE Alu 4 115 -2 6 1285 1173 277 90 23 chr6 91819752 91820235 -57696802 + L1MA7 LINE L1 5771 6287 -4 6 1285 773 252 30 25 chr6 91820247 91820450 -57696587 + B3 SINE B2 4 207 -9 6 1285 227 182 141 43 chr6 91820465 91820557 -57696480 + L1MC3 LINE L1 7351 7451 -544 6 1285 246 105 0 0 chr6 91820685 91820723 -57696314 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 6 1285 591 237 54 107 chr6 91820730 91820898 -57696139 + B3 SINE B2 2 161 -37 6 1285 291 259 34 25 chr6 91820945 91821049 -57695988 + MTEa LTR MaLR 277 379 0 6 1285 290 304 93 6 chr6 91821123 91821295 -57695742 + L1MC3 LINE L1 7597 7783 -2 6 1285 276 333 23 31 chr6 91821499 91821629 -57695408 + L2 LINE L2 2780 2908 -511 6 1285 251 289 65 84 chr6 91822048 91822246 -57694791 + MTE2b LTR MaLR 167 363 -16 6 1285 620 292 95 36 chr6 91822557 91822809 -57694228 + MLT1C LTR MaLR 62 328 -139 6 1285 181 368 69 0 chr6 91822870 91822957 -57694080 + MIR SINE MIR 79 171 -91 6 1285 752 247 15 51 chr6 91823717 91823913 -57693124 + ORR1E LTR MaLR 2 190 -169 6 1285 1102 227 0 10 chr6 91824292 91824501 -57692536 - B3 SINE B2 -9 207 1 7 1285 536 236 8 16 chr6 91824692 91824821 -57692216 + ORR1E LTR MaLR 252 379 0 6 1285 1609 47 0 0 chr6 91824840 91825030 -57692007 - B2_Mm1t SINE B2 -2 191 2 7 1285 1160 73 0 0 chr6 91825109 91825246 -57691791 - B1_Mus1 SINE Alu -11 137 1 7 1285 1425 138 63 0 chr6 91825256 91825495 -57691542 - Lx2 LINE L1 0 6997 6744 7 1285 2713 158 45 20 chr6 91825572 91826081 -57690956 - RLTR11A LTR ERVK 0 528 7 7 1285 310 307 0 0 chr6 91826322 91826406 -57690631 - ID4 SINE ID -60 92 9 7 1285 450 53 0 0 chr6 91826586 91826643 -57690394 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 7 1285 849 102 0 0 chr6 91826643 91826761 -57690276 - B1_Mus1 SINE Alu 0 148 31 7 1285 1482 174 89 27 chr6 91826857 91826899 -57690138 - RCHARR1 DNA MER1_type -125 849 812 7 1285 354 45 0 0 chr6 91826899 91826943 -57690094 + (TA)n Simple_repeat Simple_repeat 2 45 0 7 1285 1482 174 89 27 chr6 91826943 91827236 -57689801 - RCHARR1 DNA MER1_type -163 811 494 7 1285 631 225 8 0 chr6 91827253 91827382 -57689655 + B1_Mur3 SINE Alu 2 131 -18 7 1285 707 253 14 0 chr6 91827422 91827568 -57689469 + B1F2 SINE Alu 2 149 0 7 1285 253 121 14 83 chr6 91827581 91827653 -57689384 + A-rich Low_complexity Low_complexity 2 68 0 7 1285 230 343 70 48 chr6 91828728 91828915 -57688122 - MIRb SINE MIR -54 214 24 7 1285 328 323 34 84 chr6 91829001 91829044 -57687993 + ID_B1 SINE B4 54 223 -1 7 1285 600 231 29 44 chr6 91829044 91829180 -57687857 + B1_Mur2 SINE Alu 15 148 -1 7 1285 351 65 0 0 chr6 91829327 91829373 -57687664 + (TCC)n Simple_repeat Simple_repeat 3 48 0 7 1285 246 32 0 0 chr6 91829490 91829521 -57687516 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1285 573 142 113 0 chr6 91829528 91829634 -57687403 + B3 SINE B2 1 118 -98 7 1285 288 0 0 0 chr6 91829634 91829666 -57687371 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1285 225 0 0 0 chr6 91829678 91829703 -57687334 + (CAA)n Simple_repeat Simple_repeat 3 27 0 7 1285 334 215 335 37 chr6 91829750 91829914 -57687123 - B3 SINE B2 -3 213 1 7 1285 1083 121 66 6 chr6 91829959 91830125 -57686912 - B2_Mm2 SINE B2 -18 177 2 7 1285 22 94 0 0 chr6 91830484 91830548 -57686489 + AT_rich Low_complexity Low_complexity 1 64 0 7 1285 579 290 37 21 chr6 91830587 91830774 -57686263 - B3A SINE B2 -8 190 1 7 1285 701 247 95 69 chr6 91831447 91831721 -57685316 - MER2 DNA MER2_type -4 341 61 7 1285 226 296 70 0 chr6 91831751 91831822 -57685215 - MER2 DNA MER2_type -268 77 2 7 1285 774 167 98 0 chr6 91832551 91832683 -57684354 - B1_Mus1 SINE Alu -2 146 2 7 1285 1913 80 21 32 chr6 91832892 91833177 -57683860 + L1_Mus1 LINE L1 6286 6567 0 7 1285 312 167 0 48 chr6 91833459 91833522 -57683515 + B1_Mm SINE Alu 82 141 -6 7 1285 442 296 41 6 chr6 91833680 91833895 -57683142 - L1MC4 LINE L1 -406 7476 7252 7 1285 1010 274 21 11 chr6 91834102 91834386 -57682651 + B4 SINE B4 2 288 -4 7 1285 354 123 0 0 chr6 91834391 91834448 -57682589 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1285 207 0 0 0 chr6 91834981 91835004 -57682033 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1285 396 258 45 38 chr6 91835993 91836126 -57680911 - B4A SINE B4 -149 143 10 7 1285 776 264 0 23 chr6 91836951 91837122 -57679915 + B3A SINE B2 1 167 -31 7 1285 180 0 0 0 chr6 91837451 91837471 -57679566 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1285 680 191 56 0 chr6 91837480 91837606 -57679431 - B1_Mur1 SINE Alu -12 137 5 7 1285 213 219 0 0 chr6 91839856 91839897 -57677140 + A-rich Low_complexity Low_complexity 5 45 0 7 1285 200 128 0 96 chr6 91841248 91841300 -57675737 + A-rich Low_complexity Low_complexity 2 48 0 7 1285 3979 39 6 38 chr6 91841360 91841865 -57675172 - L1Md_F2 LINE L1 0 6582 6094 7 1285 519 327 6 65 chr6 91842543 91842713 -57674324 + RSINE1 SINE B4 4 163 -2 7 1285 1681 260 103 28 chr6 91843573 91843770 -57673267 + Lx6 LINE L1 6995 7125 -335 7 1285 737 59 20 0 chr6 91843770 91843872 -57673165 + (CATA)n Simple_repeat Simple_repeat 3 106 0 7 1285 1681 245 88 10 chr6 91843872 91844154 -57672883 + Lx6 LINE L1 7126 7433 -27 7 1285 450 220 126 22 chr6 91844321 91844456 -57672581 - RSINE1 SINE B4 -2 163 15 7 1285 804 246 27 5 chr6 91844505 91844689 -57672348 - B3 SINE B2 -26 190 3 7 1285 1005 140 0 0 chr6 91844954 91845104 -57671933 - B1_Mur4 SINE Alu 0 150 1 7 1285 534 306 19 6 chr6 91845470 91845631 -57671406 - RSINE1 SINE B4 0 165 3 7 1285 1446 63 16 11 chr6 91845791 91845982 -57671055 - B2_Mm2 SINE B2 -2 193 2 7 1285 376 221 100 29 chr6 91846024 91846164 -57670873 - L1MA6 LINE L1 -29 6271 6122 7 1285 324 48 44 67 chr6 91846171 91846261 -57670776 + T-rich Low_complexity Low_complexity 3 90 0 7 1285 1158 61 0 20 chr6 91846262 91846412 -57670625 - B1_Mus1 SINE Alu 0 148 2 7 1285 324 0 0 0 chr6 91846448 91846484 -57670553 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1285 871 238 19 19 chr6 91846498 91846708 -57670329 - B3 SINE B2 -2 214 5 7 1285 295 309 69 54 chr6 91847017 91847277 -57669760 - MLT1J LTR MaLR -141 371 108 7 1285 367 268 12 0 chr6 91848389 91848471 -57668566 - ID4 SINE ID 0 83 1 7 1285 969 223 14 19 chr6 91849864 91850074 -57666963 - B3 SINE B2 -7 209 1 7 1285 480 115 181 58 chr6 91851038 91851158 -57665879 + L1M4 LINE L1 4597 4718 -1428 7 1285 254 75 0 0 chr6 91851277 91851319 -57665718 + PB1D10 SINE Alu 62 106 -43 7 1285 303 284 209 51 chr6 91851857 91852353 -57664684 - Lx8 LINE L1 -2 7471 6898 7 1285 684 227 6 51 chr6 91852401 91852559 -57664478 - ID_B1 SINE B4 -72 152 2 7 1285 992 87 0 0 chr6 91852600 91852738 -57664299 + B1_Mus1 SINE Alu 11 148 0 7 1285 396 104 0 0 chr6 91852844 91852911 -57664126 + (CATA)n Simple_repeat Simple_repeat 2 68 0 7 1285 587 213 8 38 chr6 91852913 91853045 -57663992 - B1_Mm SINE Alu -16 131 4 7 1285 636 243 122 0 chr6 91853047 91853228 -57663809 - B3 SINE B2 0 216 14 7 1285 453 276 107 17 chr6 91853238 91853415 -57663622 - Charlie5 DNA MER1_type -194 2430 2238 7 1285 253 301 46 55 chr6 91853557 91853666 -57663371 - RSINE1 SINE B4 -35 130 23 7 1285 313 152 371 12 chr6 91854599 91854704 -57662333 + B1_Mur4 SINE Alu 10 150 0 7 1285 307 211 22 0 chr6 91854866 91854956 -57662081 + CT-rich Low_complexity Low_complexity 3 94 0 7 1285 3243 41 5 0 chr6 91855187 91855579 -57661458 + L1_Mus1 LINE L1 6174 6567 0 7 1285 820 270 69 96 chr6 91856985 91857280 -57659757 + ORR1D2 LTR MaLR 3 287 -83 7 1285 429 20 0 0 chr6 91857280 91857330 -57659707 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1285 820 270 69 96 chr6 91857330 91857411 -57659626 + ORR1D2 LTR MaLR 288 368 -2 7 1285 2781 208 70 23 chr6 91857411 91858088 -57658949 + ORR1D2-int LTR MaLR 14 724 -646 7 1285 1477 173 63 23 chr6 91858062 91858412 -57658625 + ORR1D2-int LTR MaLR 1007 1370 0 7 1285 1058 269 106 18 chr6 91858412 91858752 -57658285 + ORR1D2 LTR MaLR 1 370 0 7 1285 405 308 67 44 chr6 91859021 91859201 -57657836 - MLT1J LTR MaLR -84 428 245 7 1285 26 30 0 0 chr6 91859371 91859404 -57657633 + AT_rich Low_complexity Low_complexity 1 33 0 7 1285 297 289 86 51 chr6 91859474 91859671 -57657366 + L1MB8 LINE L1 5407 5610 -568 7 1285 498 274 27 73 chr6 91859673 91859893 -57657144 + B4A SINE B4 5 214 -78 7 1285 411 302 15 30 chr6 91859977 91860110 -57656927 + B4A SINE B4 159 289 -3 7 1285 415 318 58 13 chr6 91860140 91860296 -57656741 + RSINE1 SINE B4 3 165 0 7 1285 1209 189 19 0 chr6 91860341 91860553 -57656484 - B3 SINE B2 0 216 1 7 1285 417 200 147 9 chr6 91860553 91860669 -57656368 + B1_Mur1 SINE Alu 12 143 -6 7 1285 865 176 134 0 chr6 91860734 91860921 -57656116 - B3 SINE B2 -3 213 2 7 1285 773 204 0 7 chr6 91860952 91861095 -57655942 - B1_Mus2 SINE Alu 0 147 6 7 1285 812 263 50 67 chr6 91861163 91861318 -57655719 - Lx8 LINE L1 -3 7470 7329 7 1285 845 248 136 40 chr6 91861318 91861493 -57655544 - ORR1E LTR MaLR 0 359 175 7 1285 267 31 0 0 chr6 91861493 91861525 -57655512 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1285 845 248 136 40 chr6 91861525 91861673 -57655364 - ORR1E LTR MaLR -185 174 5 7 1285 812 263 50 67 chr6 91861673 91861815 -57655222 - Lx8 LINE L1 -145 7328 7178 7 1285 226 176 78 0 chr6 91861819 91861870 -57655167 + L1MB8 LINE L1 5895 5949 -229 7 1285 569 293 141 61 chr6 91861881 91862143 -57654894 + B4 SINE B4 10 292 0 7 1285 251 254 0 16 chr6 91862317 91862381 -57654656 + G-rich Low_complexity Low_complexity 5 67 0 7 1285 311 0 26 0 chr6 91863396 91863435 -57653602 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 7 1285 1155 43 0 0 chr6 91863435 91863573 -57653464 - B1_Mus2 SINE Alu -9 138 1 7 1285 1214 81 6 0 chr6 91863619 91863791 -57653246 + (TTTC)n Simple_repeat Simple_repeat 1 173 0 7 1285 1201 43 0 0 chr6 91863792 91863933 -57653104 - B1_Mm SINE Alu -6 141 1 7 1285 672 77 0 0 chr6 91864301 91864392 -57652645 + (TTTC)n Simple_repeat Simple_repeat 1 91 0 7 1285 267 31 0 0 chr6 91865277 91865309 -57651728 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1285 186 191 0 0 chr6 91865678 91865720 -57651317 + CT-rich Low_complexity Low_complexity 1 42 0 7 1285 256 244 36 12 chr6 91865982 91866065 -57650972 + (CAGG)n Simple_repeat Simple_repeat 3 87 0 7 1285 526 66 0 13 chr6 91866915 91866992 -57650045 - B1_Mus2 SINE Alu -71 76 1 7 1285 1195 267 55 16 chr6 91870276 91870641 -57646396 - MTEa LTR MaLR 0 379 1 7 1285 1498 244 47 16 chr6 91871161 91871591 -57645446 - L1M4 LINE L1 -994 5650 5208 7 1285 217 0 0 35 chr6 91871612 91871641 -57645396 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 7 1285 441 198 0 0 chr6 91871641 91871732 -57645305 + CT-rich Low_complexity Low_complexity 3 93 0 7 1285 454 271 17 0 chr6 91871732 91871850 -57645187 - PB1D9 SINE Alu 0 120 1 8 1285 246 257 46 65 chr6 91871865 91871973 -57645064 - L1M4 LINE L1 -4959 1583 1478 7 1285 207 0 0 0 chr6 91871986 91872009 -57645028 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1285 412 275 50 0 chr6 91872021 91872141 -57644896 - B1F SINE Alu -21 128 3 8 1285 271 308 22 0 chr6 91872687 91872778 -57644259 + MER81 DNA AcHobo 3 95 -19 8 1285 21 57 0 0 chr6 91873797 91873832 -57643205 + AT_rich Low_complexity Low_complexity 1 35 0 8 1285 26 30 0 0 chr6 91873871 91873904 -57643133 + AT_rich Low_complexity Low_complexity 1 33 0 8 1285 342 67 0 0 chr6 91874437 91874482 -57642555 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1285 652 257 21 0 chr6 91874490 91874630 -57642407 - RSINE1 SINE B4 -19 146 4 8 1285 833 256 75 58 chr6 91874656 91875132 -57641905 - RMER15 LTR ERVL -2 573 4 8 1285 371 269 13 0 chr6 91875161 91875239 -57641798 - PB1D10 SINE Alu -36 81 3 8 1285 1261 94 66 0 chr6 91875536 91875717 -57641320 - B2_Mm2 SINE B2 -1 194 2 8 1285 332 279 61 7 chr6 91876153 91876301 -57640736 - L1MEa LINE L1 -5627 443 288 8 1285 419 250 9 9 chr6 91876565 91876674 -57640363 + B3A SINE B2 2 110 -88 8 1285 242 83 0 0 chr6 91876756 91876792 -57640245 + B1_Mus2 SINE Alu 106 141 -6 8 1285 402 21 0 0 chr6 91876794 91876841 -57640196 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 8 1285 26 0 0 0 chr6 91877039 91877065 -57639972 + AT_rich Low_complexity Low_complexity 1 26 0 8 1285 832 45 0 26 chr6 91877565 91877680 -57639357 + B1_Mus1 SINE Alu 1 112 -36 8 1285 898 139 0 28 chr6 91878096 91878237 -57638800 + B1_Mur4 SINE Alu 1 137 -13 8 1285 198 0 0 0 chr6 91878240 91878262 -57638775 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 8 1285 280 308 159 31 chr6 91878897 91879155 -57637882 + MER2 DNA MER2_type 14 304 -41 8 1285 194 302 107 68 chr6 91879810 91879913 -57637124 - L2c LINE L2 -9 3378 3272 8 1285 1195 61 7 0 chr6 91879934 91880081 -57636956 + B1_Mus1 SINE Alu 1 148 0 8 1285 508 256 113 40 chr6 91880641 91880942 -57636095 + MER33 DNA MER1_type 1 323 -1 8 1285 291 331 42 28 chr6 91880983 91881126 -57635911 + Tigger15a DNA TcMar 326 470 -245 8 1286 190 191 0 60 chr6 91881845 91881895 -57635142 + L4 LINE RTE 1983 2029 0 8 1286 246 328 55 16 chr6 91882399 91882526 -57634511 - LTR16A LTR ERVL -113 338 207 8 1286 184 237 258 50 chr6 91882677 91882797 -57634240 - L2b LINE L2 -2 3373 3229 8 1286 405 304 23 81 chr6 91884849 91885021 -57632016 - RSINE1 SINE B4 -2 163 2 8 1286 330 291 0 11 chr6 91885579 91885666 -57631371 + RSINE1 SINE B4 72 157 -8 8 1286 1320 117 4 38 chr6 91885681 91885920 -57631117 + RMER4B LTR ERVK 6 236 -349 8 1286 1206 62 0 0 chr6 91885923 91886069 -57630968 + B1_Mus2 SINE Alu 2 147 0 8 1286 204 67 0 0 chr6 91886072 91886102 -57630935 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 8 1286 399 113 0 0 chr6 91886379 91886441 -57630596 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1286 297 283 37 9 chr6 91886441 91886548 -57630489 - L1M5 LINE L1 -564 5609 5500 8 1286 324 70 0 0 chr6 91886594 91886637 -57630400 + (TATG)n Simple_repeat Simple_repeat 2 44 0 8 1286 762 268 75 9 chr6 91886700 91886926 -57630111 - B4A SINE B4 -51 241 1 8 1286 288 265 70 37 chr6 91887071 91887231 -57629806 - L1M4 LINE L1 -2631 4375 4210 8 1286 270 305 156 52 chr6 91887288 91887423 -57629614 - RSINE1 SINE B4 -1 164 16 8 1286 270 263 420 7 chr6 91887590 91887728 -57629309 - B3A SINE B2 -3 195 1 8 1286 479 277 38 6 chr6 91887728 91887888 -57629149 - L1M4 LINE L1 -3695 3639 3506 8 1286 225 0 0 0 chr6 91888008 91888033 -57629004 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1286 528 288 222 11 chr6 91888224 91888804 -57628233 - L1M4 LINE L1 -5189 1715 1019 8 1286 288 0 0 0 chr6 91888962 91888994 -57628043 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1286 941 260 65 11 chr6 91889069 91889330 -57627707 - MTD LTR MaLR -144 275 1 8 1286 333 0 0 0 chr6 91889733 91889770 -57627267 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1286 979 302 10 7 chr6 91889781 91890071 -57626966 - B4A SINE B4 -1 291 1 8 1286 525 209 0 26 chr6 91890508 91890621 -57626416 + PB1D10 SINE Alu 1 110 -7 8 1286 733 180 174 0 chr6 91890630 91890808 -57626229 + B3 SINE B2 3 211 -5 8 1286 581 170 94 0 chr6 91891322 91891428 -57625609 + B1_Mus1 SINE Alu 10 125 -23 8 1286 514 99 11 11 chr6 91891428 91891520 -57625517 + (ATG)n Simple_repeat Simple_repeat 3 94 0 8 1286 213 273 142 32 chr6 91891942 91892097 -57624940 - L2 LINE L2 -711 2708 2537 8 1286 271 284 102 46 chr6 91892676 91892841 -57624196 + L2b LINE L2 3018 3192 -195 8 1286 198 0 0 0 chr6 91896413 91896435 -57620602 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 8 1286 746 208 0 20 chr6 91896435 91896573 -57620464 - B1_Mus2 SINE Alu -8 139 3 8 1286 195 42 0 0 chr6 91897852 91897876 -57619161 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 1286 291 331 58 37 chr6 91899127 91899315 -57617722 + MLT1A0 LTR MaLR 170 361 -4 8 1286 238 311 39 70 chr6 91899302 91899430 -57617607 - MLT1C LTR MaLR -27 363 240 8 1286 421 242 159 0 chr6 91899453 91899585 -57617452 - MLT1C LTR MaLR -302 165 13 8 1286 226 279 20 54 chr6 91900999 91901147 -57615890 + GA-rich Low_complexity Low_complexity 3 145 0 8 1286 191 88 0 29 chr6 91901739 91901774 -57615263 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 8 1286 1374 25 0 0 chr6 91901853 91902015 -57615022 + (GGA)n Simple_repeat Simple_repeat 1 162 0 8 1286 1020 192 173 85 chr6 91902135 91902511 -57614526 - RCHARR1 DNA MER1_type -1 973 565 8 1286 392 329 144 3 chr6 91902541 91902907 -57614130 + L1M5 LINE L1 3821 4244 -1902 8 1286 205 268 47 85 chr6 91903215 91903321 -57613716 + MIR SINE MIR 65 166 -96 8 1286 1606 26 0 0 chr6 91903926 91904115 -57612922 + B2_Mm1a SINE B2 1 189 -4 8 1286 1216 225 65 14 chr6 91904295 91904574 -57612463 + MTD LTR MaLR 125 417 -2 8 1286 274 300 0 24 chr6 91904610 91904692 -57612345 - B4A SINE B4 -10 282 203 8 1286 292 235 0 14 chr6 91904746 91904815 -57612222 - B4A SINE B4 -223 69 2 8 1286 316 281 96 19 chr6 91904818 91904974 -57612063 - L1MC LINE L1 -860 5473 5306 8 1286 249 175 43 21 chr6 91904982 91905122 -57611915 + (TA)n Simple_repeat Simple_repeat 1 143 0 8 1286 297 0 0 0 chr6 91905123 91905156 -57611881 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 8 1286 432 0 0 0 chr6 91905165 91905213 -57611824 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 8 1286 268 239 14 29 chr6 91905228 91905297 -57611740 - BC1_Mm scRNA scRNA -76 76 9 8 1286 1141 291 109 6 chr6 91905297 91905360 -57611677 - L1MC LINE L1 -882 5264 5201 8 1286 378 0 0 0 chr6 91905360 91905402 -57611635 + (TC)n Simple_repeat Simple_repeat 2 43 0 8 1286 1141 291 109 6 chr6 91905402 91905853 -57611184 - L1MC LINE L1 -946 5200 4698 8 1286 225 281 0 0 chr6 91905855 91905912 -57611125 - MIR SINE MIR -120 142 86 8 1286 717 273 129 68 chr6 91906061 91906387 -57610650 + MTE2b LTR MaLR 3 348 -31 8 1286 370 242 20 20 chr6 91906738 91906839 -57610198 - L2a LINE L2 -268 3158 3058 8 1286 200 326 383 9 chr6 91906902 91907221 -57609816 - L2a LINE L2 -434 2985 2548 8 1286 3764 145 100 45 chr6 91907281 91907853 -57609184 - MERVL_2A-int LTR ERVL -3764 1997 1369 8 1286 2041 73 28 16 chr6 91907853 91908171 -57608866 - RLTRETN_Mm LTR ERVK 0 322 1 8 1286 3764 145 100 45 chr6 91908171 91908379 -57608658 - MERVL_2A-int LTR ERVL -4393 1368 1174 8 1286 351 0 0 0 chr6 91908404 91908443 -57608594 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1286 3969 192 64 22 chr6 91908443 91909291 -57607746 - MERVL_2A-int LTR ERVL -4837 924 42 8 1286 937 78 63 0 chr6 91909292 91909434 -57607603 + B2_Mm2 SINE B2 3 153 -42 8 1286 294 29 0 0 chr6 91909434 91909469 -57607568 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 8 1286 443 36 0 0 chr6 91909473 91909528 -57607509 - MERVL_2A-int LTR ERVL -5706 55 1 8 1286 1681 203 213 7 chr6 91909528 91909571 -57607466 - MT2A LTR ERVL 0 533 490 8 1286 498 83 0 0 chr6 91909571 91909643 -57607394 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1286 1681 203 213 7 chr6 91909643 91910041 -57606996 - MT2A LTR ERVL -44 489 3 8 1286 556 165 0 17 chr6 91910316 91910433 -57606604 + GA-rich Low_complexity Low_complexity 3 117 0 8 1286 695 321 56 15 chr6 91911591 91911957 -57605080 + L1M5 LINE L1 5254 5637 -487 8 1286 649 256 117 30 chr6 91912248 91912514 -57604523 - B4A SINE B4 0 292 4 8 1286 280 331 30 15 chr6 91912860 91912992 -57604045 + MER117 DNA MER1_type 30 163 -34 8 1286 385 259 88 15 chr6 91913050 91913187 -57603850 - MER5A1 DNA MER1_type -18 148 2 8 1286 252 262 88 0 chr6 91913996 91914025 -57603012 + MIRc SINE MIR 65 94 -174 8 1286 432 0 0 0 chr6 91914025 91914073 -57602964 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1286 252 262 88 0 chr6 91914073 91914123 -57602914 + MIRc SINE MIR 95 149 -119 8 1286 348 250 33 0 chr6 91914125 91914217 -57602820 - L2a LINE L2 0 3426 3332 8 1286 256 303 60 10 chr6 91915028 91915128 -57601909 + MER81 DNA AcHobo 10 114 0 8 1286 309 341 37 15 chr6 91915729 91915863 -57601174 + MIR SINE MIR 79 215 -47 8 1286 1090 213 193 51 chr6 91916475 91916807 -57600230 - MTEb LTR MaLR 0 379 1 8 1286 757 186 188 46 chr6 91917282 91917479 -57599558 - URR1B DNA MER1_type 0 225 1 8 1286 183 80 0 0 chr6 91917618 91917643 -57599394 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1286 3071 132 37 60 chr6 91918700 91919288 -57597749 - RMER15 LTR ERVL 0 575 1 8 1286 1235 27 0 0 chr6 91919474 91919621 -57597416 - B1_Mm SINE Alu 0 147 1 8 1286 386 308 10 0 chr6 91920264 91920368 -57596669 + MER44B DNA MER2_type 6 110 -440 8 1286 222 118 0 0 chr6 91920369 91920403 -57596634 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 8 1286 263 311 11 137 chr6 91920403 91920578 -57596459 + MER44B DNA MER2_type 340 492 -58 8 1286 183 306 69 43 chr6 91920690 91920878 -57596159 - L2a LINE L2 -265 3161 2969 8 1286 919 196 14 14 chr6 91921097 91921383 -57595654 + CT-rich Low_complexity Low_complexity 1 286 0 8 1286 216 268 0 78 chr6 91921386 91921463 -57595574 - ID4_ SINE ID -11 72 2 8 1286 191 250 62 12 chr6 91922938 91923019 -57594018 + L2 LINE L2 2801 2885 -534 8 1286 263 263 14 42 chr6 91923301 91923436 -57593601 - MIR SINE MIR -113 163 33 9 1286 1352 145 5 9 chr6 91923621 91923843 -57593194 - URR1A DNA MER1_type -5 221 1 9 1286 1224 34 0 0 chr6 91923848 91923994 -57593043 + B1_Mm SINE Alu 1 146 -1 9 1286 257 339 148 28 chr6 91924512 91924694 -57592343 + MIR SINE MIR 53 256 -6 9 1286 246 62 0 0 chr6 91924962 91924994 -57592043 + (GGA)n Simple_repeat Simple_repeat 3 34 0 9 1286 203 319 155 0 chr6 91925367 91925483 -57591554 + MIRm SINE MIR 20 153 -123 9 1286 229 259 0 18 chr6 91925744 91925799 -57591238 + GA-rich Low_complexity Low_complexity 3 56 0 9 1286 373 118 0 0 chr6 91925938 91925989 -57591048 - MurSatRep1 Unknown Unknown -1853 284 234 9 1286 320 160 182 26 chr6 91926147 91926224 -57590813 + B1_Mur3 SINE Alu 61 149 0 9 1286 27 29 0 0 chr6 91926230 91926264 -57590773 + AT_rich Low_complexity Low_complexity 1 34 0 9 1286 232 333 6 44 chr6 91927195 91927377 -57589660 + (CACCAT)n Simple_repeat Simple_repeat 2 176 0 9 1286 584 217 21 28 chr6 91927719 91927861 -57589176 - RSINE1 SINE B4 -23 142 2 9 1286 216 0 0 0 chr6 91928240 91928264 -57588773 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 9 1286 222 37 0 0 chr6 91928743 91928770 -57588267 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1286 40 0 0 0 chr6 91928905 91928945 -57588092 + GC_rich Low_complexity Low_complexity 1 40 0 9 1286 258 160 0 0 chr6 91929896 91929946 -57587091 + (TGG)n Simple_repeat Simple_repeat 1 50 0 9 1286 319 297 50 0 chr6 91930553 91930654 -57586383 + MIR SINE MIR 42 147 -115 9 1286 349 281 85 30 chr6 91931396 91931561 -57585476 - MIRc SINE MIR -24 184 11 9 1286 240 35 0 0 chr6 91932676 91932705 -57584332 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 9 1286 299 207 136 0 chr6 91933834 91933931 -57583106 - MIR SINE MIR -50 218 96 9 1286 335 260 26 0 chr6 91934392 91934469 -57582568 - Tigger5 DNA MER2_type -1 2405 2327 9 1286 1178 41 7 0 chr6 91934474 91934621 -57582416 + B1_Mus1 SINE Alu 1 148 0 9 1286 332 43 22 0 chr6 91934622 91934668 -57582369 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 9 1286 278 275 165 0 chr6 91934669 91934760 -57582277 - Tigger5 DNA MER2_type -71 2335 2230 9 1286 258 263 49 66 chr6 91934698 91934820 -57582217 - B1F2 SINE Alu -25 124 5 9 1286 610 206 60 22 chr6 91934878 91935012 -57582025 - B1_Mur1 SINE Alu -1 148 10 9 1286 513 0 0 0 chr6 91935069 91935126 -57581911 + (TTTTA)n Simple_repeat Simple_repeat 1 57 0 9 1286 259 351 0 13 chr6 91935126 91935204 -57581833 - PB1 SINE Alu -13 114 38 9 1286 470 230 20 0 chr6 91935277 91935377 -57581660 + PB1D10 SINE Alu 1 102 -15 9 1286 639 270 107 29 chr6 91936425 91936631 -57580406 - ID_B1 SINE B4 -1 223 2 9 1286 200 182 0 0 chr6 91937408 91937441 -57579596 + GA-rich Low_complexity Low_complexity 2 34 0 9 1286 275 318 0 0 chr6 91939528 91939616 -57577421 + MIRc SINE MIR 67 154 -114 9 1286 357 24 0 0 chr6 91939701 91939743 -57577294 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1286 520 228 57 29 chr6 91940732 91940872 -57576165 - B1_Mus1 SINE Alu -1 147 4 9 1286 282 277 113 23 chr6 91941040 91941173 -57575864 - MIR3 SINE MIR -30 178 34 9 1286 190 254 36 0 chr6 91941433 91941488 -57575549 - MIRb SINE MIR -20 248 192 9 1286 222 128 64 0 chr6 91943274 91943321 -57573716 + CT-rich Low_complexity Low_complexity 1 50 0 9 1286 428 272 68 32 chr6 91943626 91943813 -57573224 - MIRb SINE MIR -5 203 2 9 1286 243 305 81 84 chr6 91946520 91946781 -57570256 - L2b LINE L2 -145 3230 2971 9 1286 626 171 25 0 chr6 91946971 91947217 -57569820 + (TG)n Simple_repeat Simple_repeat 1 252 0 9 1286 331 78 19 19 chr6 91947217 91947269 -57569768 - HAL1-3A_ME LINE L1 -831 2027 1976 9 1286 282 203 39 0 chr6 91947269 91947422 -57569615 + (TG)n Simple_repeat Simple_repeat 2 160 0 9 1286 441 189 30 6 chr6 91947434 91947599 -57569438 + (TG)n Simple_repeat Simple_repeat 1 169 0 9 1286 708 319 60 26 chr6 91947630 91947897 -57569140 - B4A SINE B4 -11 281 6 9 1286 225 321 12 12 chr6 91949152 91949234 -57567803 - MIR SINE MIR -123 139 58 9 1286 326 267 13 0 chr6 91949551 91949626 -57567411 + ID4 SINE ID 1 76 -7 9 1286 231 264 27 27 chr6 91950286 91950360 -57566677 + L3 LINE CR1 4327 4400 -89 9 1286 231 103 0 0 chr6 91950548 91950587 -57566450 + (CCTG)n Simple_repeat Simple_repeat 2 40 0 9 1286 368 188 192 15 chr6 91950590 91950632 -57566405 - HAL1-3A_ME LINE L1 -731 2127 2084 9 1286 373 239 0 0 chr6 91950632 91950703 -57566334 - ID4 SINE ID -11 72 2 9 1286 368 188 192 15 chr6 91950703 91950790 -57566247 - HAL1-3A_ME LINE L1 -775 2083 1975 9 1286 511 150 11 6 chr6 91950798 91950978 -57566059 + (TG)n Simple_repeat Simple_repeat 1 181 0 9 1286 336 303 118 22 chr6 91951028 91951163 -57565874 - RSINE1 SINE B4 -2 163 16 9 1286 457 272 16 8 chr6 91951203 91951329 -57565708 - ID_B1 SINE B4 -7 217 91 9 1286 292 143 0 0 chr6 91951466 91951515 -57565522 + MIR SINE MIR 89 137 -125 9 1286 392 19 39 0 chr6 91951519 91951571 -57565466 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 9 1286 561 296 0 27 chr6 91951961 91952110 -57564927 + RSINE1 SINE B4 3 147 -18 9 1286 198 276 100 33 chr6 91953862 91953982 -57563055 - MIRc SINE MIR -127 141 14 9 1286 409 293 35 45 chr6 91955074 91955099 -57561938 + CYRA11_Mm Unknown Y-chromosome 148 170 -447 9 1286 1137 156 0 0 chr6 91955099 91955285 -57561752 - URR1B DNA MER1_type 0 225 40 9 1286 537 279 49 55 chr6 91956379 91956542 -57560495 + RSINE1 SINE B4 3 164 -1 9 1286 890 129 31 82 chr6 91956574 91956768 -57560269 - B2_Mm2 SINE B2 -1 194 11 9 1286 1138 78 0 0 chr6 91956995 91957136 -57559901 + B1_Mus1 SINE Alu 2 142 -6 9 1286 206 32 32 0 chr6 91957137 91957168 -57559869 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 9 1286 307 232 14 0 chr6 91957233 91957302 -57559735 + B1F SINE Alu 72 141 -8 9 1286 219 246 69 42 chr6 91957406 91957478 -57559559 + ID4_ SINE ID 1 74 -9 9 1286 229 224 86 0 chr6 91957421 91957479 -57559558 + tRNA-Ala-GCA tRNA tRNA 7 69 -6 9 1286 1266 238 106 31 chr6 91957684 91958044 -57558993 + MTD LTR MaLR 18 404 -15 9 1286 2019 139 18 56 chr6 91958325 91958667 -57558370 + ORR1A4 LTR MaLR 1 329 0 9 1286 671 192 0 65 chr6 91959082 91959221 -57557816 + B1_Mur1 SINE Alu 5 134 -15 9 1286 25 0 0 0 chr6 91961553 91961578 -57555459 + AT_rich Low_complexity Low_complexity 1 25 0 9 1286 2510 219 13 28 chr6 91961578 91962114 -57554923 - Lx5 LINE L1 -8 7042 6515 9 1286 280 357 92 14 chr6 91962116 91962258 -57554779 - MER5A DNA MER1_type -8 181 29 9 1286 219 323 21 11 chr6 91962456 91962563 -57554474 + MIR SINE MIR 44 153 -115 9 1286 216 0 0 0 chr6 91965549 91965573 -57551464 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1286 809 287 4 53 chr6 91965698 91965926 -57551111 + ID_B1 SINE B4 8 224 0 9 1286 198 0 0 0 chr6 91966687 91966709 -57550328 + (CCCCCA)n Simple_repeat Simple_repeat 6 27 0 9 1286 187 190 103 0 chr6 91967398 91967456 -57549581 - L2b LINE L2 -217 3158 3095 9 1286 423 0 0 0 chr6 91968053 91968100 -57548937 + (GA)n Simple_repeat Simple_repeat 1 47 0 9 1286 788 213 58 22 chr6 91968158 91968384 -57548653 - RCHARR1 DNA MER1_type -19 955 722 9 1286 271 362 7 0 chr6 91969205 91969352 -57547685 - MIR SINE MIR -127 149 1 9 1286 354 302 67 17 chr6 91969407 91969551 -57547486 - MIR SINE MIR -87 189 31 9 1286 244 317 39 10 chr6 91969820 91969922 -57547115 - MTEb LTR MaLR 0 379 275 9 1286 387 331 168 20 chr6 91970707 91971052 -57545985 + L1MB7 LINE L1 5778 6173 -11 9 1286 231 186 0 0 chr6 91971367 91971410 -57545627 - MIRm SINE MIR -114 162 120 9 1286 611 330 117 40 chr6 91972164 91972514 -57544523 - MTEa LTR MaLR -1 378 2 9 1286 276 30 0 0 chr6 91972983 91973016 -57544021 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1286 665 229 15 0 chr6 91973049 91973180 -57543857 - B1_Mur1 SINE Alu -6 143 11 9 1286 775 300 15 57 chr6 91973191 91973453 -57543584 - B4A SINE B4 -41 251 1 9 1286 189 405 0 0 chr6 91974320 91974404 -57542633 - L2b LINE L2 -322 3053 2970 9 1286 213 39 0 0 chr6 91975451 91975477 -57541560 + (CCCTG)n Simple_repeat Simple_repeat 4 29 0 9 1286 460 186 0 45 chr6 91975560 91976045 -57540992 + (CCCTG)n Simple_repeat Simple_repeat 1 463 0 9 1286 217 300 77 18 chr6 91976260 91976402 -57540635 - MIR SINE MIR -55 153 3 9 1286 180 156 64 43 chr6 91976596 91976643 -57540394 + MIR SINE MIR 106 153 -55 9 1286 207 156 0 0 chr6 91977063 91977095 -57539942 + (CAGGC)n Simple_repeat Simple_repeat 3 34 0 9 1286 666 287 123 41 chr6 91977250 91977519 -57539518 + B4A SINE B4 2 292 0 9 1286 237 108 0 0 chr6 91977689 91977726 -57539311 + (CCCCCA)n Simple_repeat Simple_repeat 5 41 0 9 1286 260 247 11 69 chr6 91977931 91978018 -57539019 + ID2 SINE ID 2 83 0 9 1286 352 217 14 0 chr6 91979295 91979364 -57537673 - ID4_ SINE ID -7 76 7 9 1286 443 298 112 12 chr6 91979375 91979545 -57537492 - L1MB4 LINE L1 -51 6129 5943 9 1286 265 270 216 31 chr6 91979607 91979780 -57537257 - L1MB4 LINE L1 -392 5779 5577 9 1286 942 79 24 18 chr6 91979780 91979958 -57537079 + (TG)n Simple_repeat Simple_repeat 1 182 -162 9 1286 942 79 24 18 chr6 91979965 91980122 -57536915 + (TG)n Simple_repeat Simple_repeat 183 344 0 9 1286 265 270 216 31 chr6 91980122 91980162 -57536875 - L1MB4 LINE L1 -613 5558 5518 9 1286 181 194 0 0 chr6 91980785 91980821 -57536216 + L2a LINE L2 3029 3064 -362 9 1286 2133 160 62 8 chr6 91981812 91982202 -57534835 - MTD LTR MaLR -6 413 3 9 1286 369 0 0 0 chr6 91982527 91982568 -57534469 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1286 476 74 0 24 chr6 91982569 91982652 -57534385 + (CAGAGA)n Simple_repeat Simple_repeat 2 82 0 1 1286 446 264 85 0 chr6 91982671 91982777 -57534260 + RSINE1 SINE B4 8 122 -43 1 1286 434 302 78 9 chr6 91982814 91983031 -57534006 + L1MB1 LINE L1 5791 6022 -167 1 1286 554 224 271 17 chr6 91983982 91984159 -57532878 + ID_B1 SINE B4 2 223 -1 1 1286 510 253 37 99 chr6 91984172 91984334 -57532703 + B4 SINE B4 72 223 -69 1 1286 1055 65 0 0 chr6 91984198 91984337 -57532700 + B1_Mus1 SINE Alu 10 148 0 1 1286 237 283 0 0 chr6 91985514 91985567 -57531470 + MER47C DNA MER2_type 17 69 -28 1 1286 495 0 0 0 chr6 91985576 91985631 -57531406 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1286 459 191 125 18 chr6 91985636 91985748 -57531289 - PB1 SINE Alu -3 124 1 1 1286 228 237 214 10 chr6 91985994 91986092 -57530945 - MIRc SINE MIR -105 163 46 1 1286 301 303 48 32 chr6 91986646 91986772 -57530265 + MER20 DNA MER1_type 34 161 -58 1 1286 1344 221 116 17 chr6 91986838 91987183 -57529854 + MTEb LTR MaLR 1 379 0 1 1286 248 289 46 15 chr6 91987188 91987318 -57529719 - L2b LINE L2 -219 3156 3023 1 1286 194 333 16 0 chr6 91987424 91987487 -57529550 - MIRc SINE MIR -109 159 96 1 1286 201 302 161 17 chr6 91987797 91987915 -57529122 - MIRb SINE MIR -42 226 92 1 1286 254 215 14 71 chr6 91988479 91988549 -57528488 - ID4_ SINE ID -2 81 16 1 1286 239 269 8 0 chr6 91989638 91989757 -57527280 + (TCCA)n Simple_repeat Simple_repeat 2 121 0 1 1286 216 0 0 0 chr6 91989963 91989987 -57527050 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1286 746 302 71 8 chr6 91990013 91990280 -57526757 - B4A SINE B4 -6 286 3 1 1286 1867 298 22 33 chr6 91991158 91991700 -57525337 - MLT1G3 LTR MaLR -59 536 1 1 1286 387 0 0 0 chr6 91992334 91992377 -57524660 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1286 837 215 96 20 chr6 91992468 91992667 -57524370 + B3 SINE B2 3 216 0 1 1286 1479 84 0 5 chr6 91993880 91994071 -57522966 - B2_Mm2 SINE B2 -5 190 1 1 1286 239 278 115 38 chr6 91994698 91994855 -57522182 - L1M4 LINE L1 -3279 2867 2699 1 1286 207 261 161 40 chr6 91995922 91996046 -57520991 - MIRb SINE MIR -46 222 84 1 1286 376 171 13 38 chr6 91996472 91996551 -57520486 - PB1D10 SINE Alu -8 109 33 1 1286 1010 99 0 27 chr6 91996606 91996752 -57520285 + B1_Mus1 SINE Alu 1 142 -6 1 1286 668 12 12 0 chr6 91997047 91997128 -57519909 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 1 1286 1513 49 38 0 chr6 91997363 91997546 -57519491 - B2_Mm2 SINE B2 -4 191 2 1 1286 430 296 85 16 chr6 91997556 91997816 -57519221 - L1MB7 LINE L1 -227 5957 5679 1 1286 349 326 151 72 chr6 91997890 91998141 -57518896 - RMER15 LTR ERVL -43 532 262 1 1286 243 0 0 0 chr6 91998164 91998191 -57518846 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1286 1117 59 0 0 chr6 91998191 91998326 -57518711 - B1_Mus2 SINE Alu -12 135 1 1 1286 334 225 422 24 chr6 91998479 91998657 -57518380 - L1MB7 LINE L1 -742 5436 5188 1 1286 411 73 0 0 chr6 91998664 91998719 -57518318 + (TCCA)n Simple_repeat Simple_repeat 2 56 0 1 1286 316 261 0 0 chr6 91998743 91998808 -57518229 - ID4 SINE ID -18 65 1 1 1286 952 183 114 0 chr6 91998841 91999043 -57517994 + MTD LTR MaLR 195 419 0 1 1286 681 13 0 0 chr6 91999293 91999371 -57517666 + (TTTC)n Simple_repeat Simple_repeat 4 81 0 1 1286 379 149 30 0 chr6 91999400 91999467 -57517570 - ID_B1 SINE B4 -21 203 135 1 1286 23 0 0 0 chr6 91999476 91999499 -57517538 + AT_rich Low_complexity Low_complexity 1 23 0 1 1286 748 275 31 0 chr6 91999539 91999699 -57517338 - RSINE1 SINE B4 0 165 1 1 1286 1733 161 118 42 chr6 92001562 92001734 -57515303 - ORR1C2 LTR MaLR 0 384 173 1 1286 243 0 0 0 chr6 92001734 92001761 -57515276 + (CAGG)n Simple_repeat Simple_repeat 4 30 0 2 1286 1733 161 118 42 chr6 92001761 92001945 -57515092 - ORR1C2 LTR MaLR -212 172 2 1 1286 228 333 15 0 chr6 92002251 92002317 -57514720 + ID4 SINE ID 8 74 -9 3 1286 241 306 251 19 chr6 92002333 92002640 -57514397 - L2a LINE L2 -139 3287 2910 4 1286 256 383 21 0 chr6 92004006 92004100 -57512937 + MER117 DNA MER1_type 85 180 -17 5 1286 1015 285 141 25 chr6 92004905 92005545 -57511492 - L1MA6 LINE L1 -251 6049 5336 6 1286 357 138 17 0 chr6 92005587 92005645 -57511392 - B1_Mus1 SINE Alu -88 60 2 7 1286 266 256 80 88 chr6 92005645 92005724 -57511313 - MT2B LTR ERVL -385 216 81 8 1286 634 280 193 17 chr6 92005773 92006183 -57510854 - L1MC3 LINE L1 0 7785 7304 9 1286 370 298 111 95 chr6 92006218 92006470 -57510567 - L1MC3 LINE L1 -593 7192 6937 9 1286 261 275 92 78 chr6 92006635 92006777 -57510260 - L1MC3 LINE L1 -964 6821 6678 9 1286 246 264 0 117 chr6 92006874 92006977 -57510060 - L1MC3 LINE L1 -1116 6669 6579 9 1286 289 256 70 31 chr6 92007099 92007243 -57509794 - L1MEg LINE L1 -4682 2355 2122 1 1286 423 286 0 0 chr6 92007285 92007383 -57509654 + PB1D10 SINE Alu 5 102 -15 1 1286 247 279 0 14 chr6 92007397 92007421 -57509616 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1286 189 0 0 0 chr6 92007421 92007442 -57509595 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1286 247 279 0 14 chr6 92007442 92007486 -57509551 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1286 227 258 97 0 chr6 92007711 92007773 -57509264 - B4A SINE B4 -8 284 217 1 1286 1769 296 116 18 chr6 92007780 92008520 -57508517 - Lx8 LINE L1 -6 7467 6655 1 1286 783 206 0 28 chr6 92008525 92008670 -57508367 - B1_Mur2 SINE Alu -6 143 3 1 1286 489 201 189 21 chr6 92008674 92008870 -57508167 - B4A SINE B4 -63 229 1 1 1286 2597 80 3 0 chr6 92009200 92009526 -57507511 - ORR1A2 LTR MaLR 0 327 1 1 1286 1128 181 14 9 chr6 92009561 92009773 -57507264 - B3 SINE B2 -1 215 3 1 1286 2876 259 59 17 chr6 92009964 92010676 -57506361 - Lx8 LINE L1 -322 7151 6410 2 1286 289 289 89 52 chr6 92011252 92011387 -57505650 - L1MEg LINE L1 -6015 408 269 1 1286 335 269 41 51 chr6 92011435 92011533 -57505504 - RSINE1 SINE B4 -38 127 31 2 1286 266 203 14 0 chr6 92012230 92012299 -57504738 + ID4 SINE ID 1 70 -13 2 1287 230 109 0 42 chr6 92013003 92013051 -57503986 + A-rich Low_complexity Low_complexity 1 46 0 2 1287 305 305 59 70 chr6 92013598 92013785 -57503252 - ORR1E LTR MaLR -152 207 23 2 1287 315 242 9 147 chr6 92014240 92014356 -57502681 - RSINE1 SINE B4 -64 101 2 2 1287 633 227 14 21 chr6 92014368 92014512 -57502525 - B1_Mur2 SINE Alu -1 148 6 2 1287 293 296 39 133 chr6 92014377 92014583 -57502454 - MT2B LTR ERVL -299 285 98 2 1287 268 299 35 0 chr6 92014830 92015015 -57502022 - L1MD LINE L1 -419 5821 5627 2 1287 412 260 240 0 chr6 92015522 92015722 -57501315 - L1MB4 LINE L1 -119 6061 5814 2 1287 215 242 0 15 chr6 92015739 92015806 -57501231 + CT-rich Low_complexity Low_complexity 2 67 0 3 1287 277 296 42 0 chr6 92016381 92016452 -57500585 + B4A SINE B4 218 291 -1 3 1287 296 292 56 0 chr6 92016557 92016646 -57500391 + ID4_ SINE ID 1 94 -58 3 1287 409 287 119 21 chr6 92016867 92017057 -57499980 - MLT1A1 LTR MaLR -14 453 191 3 1287 255 250 11 111 chr6 92018834 92018924 -57498113 - B2_Mm2 SINE B2 -113 82 2 3 1287 237 329 40 0 chr6 92020586 92020662 -57496375 + MIR3 SINE MIR 91 169 -39 3 1287 189 0 0 0 chr6 92021122 92021143 -57495894 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1287 1035 196 57 5 chr6 92021861 92022071 -57494966 + ID_B1 SINE B4 2 222 -2 3 1287 387 316 0 10 chr6 92022466 92022565 -57494472 + B1F1 SINE Alu 1 98 -51 3 1287 245 29 0 29 chr6 92022572 92022607 -57494430 + (TAA)n Simple_repeat Simple_repeat 3 36 0 3 1287 261 238 118 12 chr6 92023044 92023129 -57493908 + MIR SINE MIR 23 116 -146 4 1287 226 189 128 43 chr6 92023334 92023428 -57493609 - Lx8 LINE L1 -2 7471 7370 4 1287 617 209 11 17 chr6 92023443 92023623 -57493414 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 4 1287 859 156 9 0 chr6 92023633 92023853 -57493184 + (TG)n Simple_repeat Simple_repeat 1 222 0 4 1287 560 164 166 32 chr6 92023902 92024059 -57492978 - Lx8 LINE L1 -340 7133 6956 4 1287 180 0 0 0 chr6 92025634 92025654 -57491383 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1287 477 240 75 33 chr6 92025882 92026026 -57491011 + MER44D DNA MER2_type 1 161 -178 4 1287 3669 85 123 2 chr6 92026026 92026547 -57490490 - MT2B2 LTR ERVL 0 584 1 4 1287 299 321 142 50 chr6 92026547 92026641 -57490396 + MER44A DNA MER2_type 162 261 -78 4 1287 26 0 0 0 chr6 92026798 92026824 -57490213 + AT_rich Low_complexity Low_complexity 1 26 0 4 1287 370 321 152 53 chr6 92028217 92028539 -57488498 + ORR1E LTR MaLR 6 359 0 4 1287 369 279 107 83 chr6 92029260 92029284 -57487753 - PB1 SINE Alu -3 124 101 4 1287 1035 122 0 13 chr6 92029284 92029433 -57487604 + B1_Mm SINE Alu 1 147 0 5 1287 369 279 107 83 chr6 92029433 92029529 -57487508 - PB1 SINE Alu -27 100 1 4 1287 739 240 34 22 chr6 92029629 92029808 -57487229 + B3A SINE B2 2 182 -16 5 1287 31 0 0 0 chr6 92029838 92029869 -57487168 + AT_rich Low_complexity Low_complexity 1 31 0 5 1287 1032 239 28 14 chr6 92030608 92030824 -57486213 + ID_B1 SINE B4 5 223 -1 5 1287 237 233 91 91 chr6 92031242 92031374 -57485663 + RMER12 LTR ERVK 725 856 -466 5 1287 321 349 0 34 chr6 92031341 92031430 -57485607 - ID_B1 SINE B4 -116 108 23 5 1287 425 242 30 40 chr6 92031468 92031567 -57485470 - PB1D10 SINE Alu -7 110 13 5 1287 268 236 14 27 chr6 92032228 92032302 -57484735 + PB1D10 SINE Alu 33 105 -12 5 1287 3007 137 75 16 chr6 92033455 92033780 -57483257 + MT2A LTR ERVL 1 331 -202 5 1287 4496 127 38 12 chr6 92033780 92034516 -57482521 - RMER6A LTR ERVK -1 755 1 5 1287 3007 137 75 16 chr6 92034516 92034693 -57482344 + MT2A LTR ERVL 332 533 0 5 1287 340 306 139 66 chr6 92034700 92034987 -57482050 + MLT1G3 LTR MaLR 84 391 -204 6 1287 224 386 0 11 chr6 92036006 92036095 -57480942 + MIRb SINE MIR 98 185 -83 6 1287 228 348 0 0 chr6 92036399 92036468 -57480569 - ID2 SINE ID -3 80 12 6 1287 1025 51 64 21 chr6 92036669 92036810 -57480227 - B1_Mus2 SINE Alu 0 147 1 6 1287 404 182 0 0 chr6 92037280 92037346 -57479691 + ID SINE ID 2 67 -157 6 1287 2573 172 228 12 chr6 92037352 92037958 -57479079 - RMER19A LTR ERVK 0 737 1 6 1287 1839 138 162 6 chr6 92037958 92038315 -57478722 + MTC LTR MaLR 1 413 -8 6 1287 575 230 50 14 chr6 92038424 92038565 -57478472 - B1_Mus2 SINE Alu -1 146 1 6 1287 186 103 0 0 chr6 92041323 92041352 -57475685 + (CGG)n Simple_repeat Simple_repeat 1 29 0 6 1287 22 0 0 0 chr6 92041388 92041410 -57475627 + GC_rich Low_complexity Low_complexity 1 22 0 6 1287 218 140 96 39 chr6 92041564 92041668 -57475369 + (CCCGG)n Simple_repeat Simple_repeat 3 112 0 7 1287 246 62 0 0 chr6 92041762 92041794 -57475243 + (CGCGG)n Simple_repeat Simple_repeat 4 35 0 7 1287 237 108 0 0 chr6 92041912 92041949 -57475088 + (TCCCC)n Simple_repeat Simple_repeat 2 38 0 7 1287 28 0 0 0 chr6 92041979 92042007 -57475030 + GC_rich Low_complexity Low_complexity 1 28 0 7 1287 21 71 0 0 chr6 92042068 92042110 -57474927 + GC_rich Low_complexity Low_complexity 1 42 0 7 1287 814 238 73 10 chr6 92043421 92043625 -57473412 + ID_B1 SINE B4 6 222 -2 7 1287 278 133 22 22 chr6 92044225 92044271 -57472766 + B1_Mur1 SINE Alu 89 134 -15 7 1287 212 310 27 53 chr6 92044401 92044476 -57472561 - FLAM_A SINE Alu -221 74 2 7 1287 189 379 0 15 chr6 92044498 92044565 -57472472 + MIRb SINE MIR 8 73 -195 7 1287 237 273 221 0 chr6 92044810 92044887 -57472150 + B1F2 SINE Alu 56 149 0 7 1287 260 311 52 39 chr6 92044829 92044906 -57472131 + B4 SINE B4 164 241 -51 8 1287 255 324 143 78 chr6 92044956 92044989 -57472048 - B4A SINE B4 -44 248 144 8 1287 621 191 0 0 chr6 92044989 92045094 -57471943 - PB1D9 SINE Alu 0 120 16 8 1287 246 296 0 148 chr6 92045011 92045126 -57471911 - MT2B LTR ERVL -350 251 154 8 1287 255 324 143 78 chr6 92045094 92045110 -57471927 - B4A SINE B4 -44 143 85 8 1287 211 263 0 0 chr6 92046447 92046485 -57470552 + ID_B1 SINE B4 82 119 -105 8 1287 384 244 26 0 chr6 92046620 92046698 -57470339 + PB1D10 SINE Alu 38 117 0 8 1287 215 297 126 67 chr6 92046775 92046894 -57470143 + B1_Mm SINE Alu 5 130 -17 8 1287 408 272 190 41 chr6 92046969 92047237 -57469800 + L1ME3A LINE L1 5853 6160 -13 8 1287 603 126 175 56 chr6 92047269 92047395 -57469642 + B1_Mus1 SINE Alu 6 146 -2 8 1287 180 0 0 0 chr6 92047451 92047471 -57469566 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 8 1287 1041 47 0 0 chr6 92047481 92047610 -57469427 - B2_Mm2 SINE B2 -65 130 2 9 1287 192 398 19 0 chr6 92047829 92047932 -57469105 + MIRb SINE MIR 3 107 -161 9 1287 1147 75 0 14 chr6 92048271 92048282 -57468755 - B1_Mus2 SINE Alu -1 146 137 9 1287 261 0 0 0 chr6 92048282 92048311 -57468726 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1287 1147 75 0 14 chr6 92048311 92048447 -57468590 - B1_Mus2 SINE Alu -11 136 1 9 1287 1318 255 30 30 chr6 92048781 92049120 -57467917 + Lx5 LINE L1 6708 7046 -4 9 1287 524 241 47 2 chr6 92049203 92049321 -57467716 - PB1D9 SINE Alu 0 120 1 9 1287 214 253 82 71 chr6 92049386 92049471 -57467566 - B1_Mur2 SINE Alu -17 132 47 9 1287 28 0 0 0 chr6 92049570 92049598 -57467439 + AT_rich Low_complexity Low_complexity 1 28 0 9 1287 881 94 55 0 chr6 92049603 92049731 -57467306 - B1_Mur4 SINE Alu -11 139 5 9 1287 1310 41 80 17 chr6 92050771 92050946 -57466091 - B2_Mm2 SINE B2 -9 186 1 9 1287 460 243 123 28 chr6 92050997 92051103 -57465934 - RSINE1 SINE B4 -47 118 3 1 1287 296 270 0 26 chr6 92051538 92051614 -57465423 - ID4 SINE ID 0 83 10 1 1287 405 129 0 0 chr6 92051966 92052036 -57465001 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1287 293 305 114 51 chr6 92052328 92052660 -57464377 + L1M5 LINE L1 4744 5096 -1050 1 1287 207 0 0 0 chr6 92053630 92053653 -57463384 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1287 248 300 29 0 chr6 92053721 92053791 -57463246 + ID4 SINE ID 3 74 -9 1 1287 447 35 0 0 chr6 92054519 92054576 -57462461 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1287 753 176 0 39 chr6 92054576 92054697 -57462340 + B1_Mur1 SINE Alu 23 140 -9 1 1287 217 248 226 9 chr6 92056028 92056082 -57460955 - MIR SINE MIR -87 175 116 1 1287 319 21 42 0 chr6 92056082 92056130 -57460907 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1 1287 217 248 226 9 chr6 92056130 92056181 -57460856 - MIR SINE MIR -147 115 47 1 1287 1194 200 20 0 chr6 92056331 92056526 -57460511 - B3 SINE B2 -17 199 1 1 1287 26 0 0 0 chr6 92056529 92056555 -57460482 + AT_rich Low_complexity Low_complexity 1 26 0 1 1287 493 269 100 35 chr6 92056840 92057040 -57459997 - LTR86A1 LTR ERVL -242 271 59 1 1287 342 0 0 0 chr6 92057141 92057179 -57459858 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1287 28 0 0 0 chr6 92057447 92057475 -57459562 + AT_rich Low_complexity Low_complexity 1 28 0 1 1287 576 299 23 50 chr6 92057494 92057701 -57459336 + B4A SINE B4 52 246 -46 1 1287 947 229 170 46 chr6 92057770 92058059 -57458978 + ORR1D2 LTR MaLR 1 339 -31 1 1287 2076 176 86 25 chr6 92058059 92058456 -57458581 - MTC LTR MaLR 0 421 1 1 1287 947 229 170 46 chr6 92058456 92058495 -57458542 + ORR1D2 LTR MaLR 340 370 0 1 1287 927 275 55 90 chr6 92058495 92058722 -57458315 - MTE2b LTR MaLR -59 320 87 1 1287 897 261 38 10 chr6 92058722 92058931 -57458106 + B3 SINE B2 2 216 0 1 1287 927 275 55 90 chr6 92058931 92058951 -57458086 - MTE2b LTR MaLR -293 86 86 1 1287 785 197 27 27 chr6 92058951 92059097 -57457940 + B1_Mur1 SINE Alu 1 146 -3 1 1287 927 275 55 90 chr6 92059097 92059176 -57457861 - MTE2b LTR MaLR -293 86 5 1 1287 518 325 97 25 chr6 92059183 92059379 -57457658 + B4A SINE B4 26 235 -57 1 1287 1438 157 274 17 chr6 92059480 92059772 -57457265 - MTC LTR MaLR 0 367 1 1 1287 4542 222 108 39 chr6 92059777 92059823 -57457214 - MTC-int LTR MaLR -41 1329 1283 1 1287 423 0 0 0 chr6 92059823 92059870 -57457167 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1287 4542 222 108 39 chr6 92059870 92060440 -57456597 - MTC-int LTR MaLR -88 1282 645 1 1287 586 213 71 29 chr6 92060440 92060580 -57456457 - B1_Mus2 SINE Alu 0 147 2 1 1287 4542 222 108 39 chr6 92060580 92061205 -57455832 - MTC-int LTR MaLR -726 644 4 1 1287 2234 187 40 5 chr6 92061204 92061607 -57455430 - MTC LTR MaLR 0 421 5 1 1287 2379 91 0 12 chr6 92061620 92061943 -57455094 - ORR1A2 LTR MaLR -8 319 1 1 1287 628 287 134 0 chr6 92062148 92062312 -57454725 + B3 SINE B2 3 188 -28 1 1287 27 29 0 0 chr6 92062637 92062671 -57454366 + AT_rich Low_complexity Low_complexity 1 34 0 1 1287 877 305 37 7 chr6 92062683 92062954 -57454083 + B4A SINE B4 3 281 -11 1 1287 22 35 0 0 chr6 92063068 92063097 -57453940 + AT_rich Low_complexity Low_complexity 1 29 0 1 1287 234 0 0 0 chr6 92064067 92064093 -57452944 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1287 1176 43 42 7 chr6 92064343 92064485 -57452552 - B1_Mm SINE Alu 0 147 1 1 1287 7897 60 8 7 chr6 92064496 92065789 -57451248 - L1Md_F2 LINE L1 0 6582 5288 1 1287 35536 69 6 32 chr6 92065786 92072133 -57444904 - L1Md_F3 LINE L1 0 6584 416 1 1287 246 95 0 0 chr6 92072149 92072191 -57444846 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1287 579 279 14 14 chr6 92072236 92072378 -57444659 - RSINE1 SINE B4 -23 142 1 1 1287 592 256 53 0 chr6 92072388 92072521 -57444516 - B1_Mur2 SINE Alu -8 141 2 1 1287 709 156 85 8 chr6 92072568 92072697 -57444340 - B1_Mus2 SINE Alu -1 146 8 1 1287 426 211 104 19 chr6 92072707 92072813 -57444224 - B1_Mur4 SINE Alu -6 144 30 1 1287 546 279 20 39 chr6 92072839 92072992 -57444045 - B4A SINE B4 -140 152 3 1 1287 302 301 223 43 chr6 92073016 92073554 -57443483 - L1M5 LINE L1 -1979 4167 3533 1 1287 809 184 226 17 chr6 92073728 92073905 -57443132 - B3 SINE B2 -1 215 2 1 1287 477 0 0 0 chr6 92073906 92073959 -57443078 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1287 2436 137 49 3 chr6 92074152 92074541 -57442496 + MTD LTR MaLR 13 419 0 1 1287 783 255 251 33 chr6 92074557 92074988 -57442049 - Lx8 LINE L1 -170 7303 6779 1 1287 321 317 73 88 chr6 92074993 92075091 -57441946 - L1M4 LINE L1 -581 5581 5505 1 1287 1291 41 0 0 chr6 92075091 92075237 -57441800 - B1_Mm SINE Alu 0 147 2 1 1287 403 249 118 42 chr6 92075237 92075440 -57441597 - L1M4 LINE L1 -658 5504 5272 1 1287 359 255 96 19 chr6 92075461 92075565 -57441472 - PB1D9 SINE Alu -1 119 8 1 1287 420 261 67 67 chr6 92075673 92075837 -57441200 - RSINE1 SINE B4 0 165 2 1 1287 428 225 153 6 chr6 92075842 92076012 -57441025 - L1M4 LINE L1 -941 5205 5011 1 1287 348 246 0 14 chr6 92076201 92076271 -57440766 - ID4 SINE ID -14 69 1 1 1287 258 278 100 50 chr6 92076418 92076558 -57440479 - L1M5 LINE L1 -467 5773 5627 1 1287 32 43 0 0 chr6 92076760 92076806 -57440231 + AT_rich Low_complexity Low_complexity 1 46 0 1 1287 284 231 137 65 chr6 92078038 92078152 -57438885 + B1_Mur1 SINE Alu 2 140 -9 1 1287 1303 88 2 6 chr6 92078186 92078383 -57438654 - B2_Mm2 SINE B2 -1 192 2 1 1287 8591 33 0 0 chr6 92078644 92079742 -57437295 - L1Md_A LINE L1 0 6582 5485 1 1287 390 274 101 22 chr6 92080312 92080450 -57436587 - B1F1 SINE Alu 0 149 1 1 1287 803 253 43 11 chr6 92080450 92080522 -57436515 - ID SINE ID -145 79 2 1 1287 2350 127 232 50 chr6 92081019 92081094 -57435943 - MT2B LTR ERVL -5 596 544 1 1287 402 39 0 0 chr6 92081094 92081146 -57435891 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1287 2350 127 232 50 chr6 92081146 92081574 -57435463 - MT2B LTR ERVL -58 543 1 1 1287 345 93 0 0 chr6 92082375 92082429 -57434608 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1287 261 232 13 92 chr6 92082815 92082891 -57434146 - PB1D10 SINE Alu -1 116 47 1 1287 1243 196 204 7 chr6 92083039 92083347 -57433690 + MTD LTR MaLR 51 419 0 1 1287 359 283 29 122 chr6 92084322 92084350 -57432687 - B4 SINE B4 -45 247 198 1 1287 497 232 37 74 chr6 92084350 92084375 -57432662 - B1_Mm SINE Alu -3 144 120 1 1287 3349 70 12 0 chr6 92084375 92084775 -57432262 - MTB_Mm LTR MaLR -2 405 1 1 1287 497 232 37 74 chr6 92084775 92084884 -57432153 - B1_Mm SINE Alu -28 119 15 1 1287 359 275 13 107 chr6 92084884 92084908 -57432129 - B4 SINE B4 -91 201 80 1 1287 292 304 29 81 chr6 92084908 92085044 -57431993 - ID_B1 SINE B4 -79 145 17 1 1287 236 312 0 15 chr6 92086055 92086120 -57430917 - ID4_ SINE ID -18 65 2 1 1287 30 69 0 0 chr6 92086345 92086403 -57430634 + AT_rich Low_complexity Low_complexity 1 58 0 1 1287 671 223 262 12 chr6 92086473 92086641 -57430396 + ID_B1 SINE B4 1 210 -14 1 1287 497 240 28 19 chr6 92086833 92086939 -57430098 - PB1D7 SINE Alu 0 120 14 1 1287 21 0 0 0 chr6 92086968 92086989 -57430048 + AT_rich Low_complexity Low_complexity 1 21 0 1 1287 299 200 144 0 chr6 92087556 92087646 -57429391 - L1M2 LINE L1 -523 5777 5675 1 1287 640 268 102 18 chr6 92087669 92087954 -57429083 - L1M4 LINE L1 -1373 4773 4465 1 1287 212 245 0 0 chr6 92087968 92088017 -57429020 + T-rich Low_complexity Low_complexity 1 49 0 1 1287 222 290 45 56 chr6 92088017 92088064 -57428973 - ID_B1 SINE B4 -1 223 105 1 1287 348 253 221 0 chr6 92088064 92088159 -57428878 - B1F SINE Alu -31 118 3 1 1287 701 255 213 79 chr6 92088168 92088892 -57428145 - L1M4 LINE L1 -1707 4439 3619 1 1287 396 232 0 0 chr6 92089481 92089550 -57427487 + ID_B1 SINE B4 84 152 -72 1 1287 378 260 29 77 chr6 92089550 92089584 -57427453 + PB1D10 SINE Alu 3 100 -17 1 1287 763 86 17 0 chr6 92089590 92089707 -57427330 + (GA)n Simple_repeat Simple_repeat 1 119 0 1 1287 186 43 0 0 chr6 92090353 92090376 -57426661 + (TTA)n Simple_repeat Simple_repeat 1 23 0 1 1287 489 298 22 22 chr6 92090559 92090693 -57426344 + RSINE1 SINE B4 19 152 -13 1 1287 459 0 0 0 chr6 92090696 92090747 -57426290 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1287 442 245 28 28 chr6 92091208 92091317 -57425720 - PB1D10 SINE Alu -8 109 1 1 1287 491 213 0 31 chr6 92091226 92091323 -57425714 - ID_B1 SINE B4 -55 169 76 1 1287 405 207 0 0 chr6 92091439 92091526 -57425511 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 1287 219 139 0 0 chr6 92091888 92091924 -57425113 + (GGA)n Simple_repeat Simple_repeat 1 36 0 1 1287 446 48 0 0 chr6 92092061 92092124 -57424913 - B1_Mus2 SINE Alu -1 146 84 1 1287 536 276 43 8 chr6 92092766 92092918 -57424119 - ID_B1 SINE B4 -127 165 2 1 1287 797 314 48 0 chr6 92092960 92093170 -57423867 - B4A SINE B4 -62 230 11 1 1287 263 111 0 0 chr6 92093169 92093205 -57423832 + ORR1B1 LTR MaLR 351 386 -8 1 1287 503 132 107 61 chr6 92093195 92093321 -57423716 + MTC LTR MaLR 247 421 0 1 1287 29 0 0 0 chr6 92093335 92093364 -57423673 + AT_rich Low_complexity Low_complexity 1 29 0 1 1287 611 97 46 23 chr6 92093367 92093501 -57423536 - ORR1A4 LTR MaLR -190 184 1 1 1287 908 215 114 10 chr6 92093501 92093693 -57423344 - MTD LTR MaLR -158 261 50 1 1287 1703 34 0 0 chr6 92093695 92093901 -57423136 + ORR1A1 LTR MaLR 141 346 0 1 1287 13231 53 84 2 chr6 92093901 92095557 -57421480 + ORR1A1-int LTR MaLR 1 1792 0 1 1287 2293 39 90 3 chr6 92095557 92095868 -57421169 + ORR1A1 LTR MaLR 1 338 -8 1 1287 500 271 58 146 chr6 92096789 92097363 -57419674 - L1MCa LINE L1 -3319 3002 2480 1 1287 239 203 43 0 chr6 92097595 92097664 -57419373 - L1MCa LINE L1 -4384 2124 2053 1 1287 980 49 12 0 chr6 92097788 92097921 -57419116 + B1_Mus1 SINE Alu 10 148 0 1 1287 375 260 0 0 chr6 92098460 92098533 -57418504 + PB1D10 SINE Alu 1 73 -44 1 1287 189 0 0 0 chr6 92098869 92098890 -57418147 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1287 816 187 14 7 chr6 92098890 92099020 -57418017 - B1_Mus1 SINE Alu -12 136 5 2 1287 1165 222 55 24 chr6 92099212 92099466 -57417571 - MTEb LTR MaLR -117 262 1 2 1287 207 100 0 0 chr6 92100293 92100323 -57416714 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2 1287 1008 150 14 0 chr6 92100438 92100578 -57416459 - B1_Mur2 SINE Alu -7 142 1 2 1287 277 125 21 0 chr6 92100647 92100695 -57416342 - L1MB3 LINE L1 -116 6067 6019 2 1287 519 330 11 53 chr6 92100811 92101000 -57416037 - B3A SINE B2 -17 181 1 2 1287 558 297 47 0 chr6 92101088 92101236 -57415801 - RSINE1 SINE B4 -8 157 3 2 1287 198 0 0 0 chr6 92102798 92102820 -57414217 + (TC)n Simple_repeat Simple_repeat 2 23 0 2 1287 318 26 0 0 chr6 92102820 92102858 -57414179 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1287 858 43 9 0 chr6 92105399 92105514 -57411523 + B1_Mus2 SINE Alu 32 147 0 2 1287 963 307 25 11 chr6 92105533 92105813 -57411224 + B4A SINE B4 2 285 -7 2 1287 688 258 40 55 chr6 92105882 92106083 -57410954 - B3A SINE B2 0 198 1 2 1287 228 35 0 0 chr6 92106284 92106313 -57410724 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1287 243 0 0 0 chr6 92106946 92106973 -57410064 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1287 222 282 27 40 chr6 92108550 92108624 -57408413 - ID4 SINE ID 0 83 11 2 1287 207 343 0 14 chr6 92111040 92111111 -57405926 + MIRm SINE MIR 78 147 -129 2 1287 296 258 61 0 chr6 92111632 92111698 -57405339 - RSINE1 SINE B4 -22 143 74 2 1287 1217 64 131 23 chr6 92112138 92112155 -57404882 - B2_Mm2 SINE B2 0 195 179 2 1287 261 0 0 0 chr6 92112155 92112184 -57404853 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 2 1287 1217 64 131 23 chr6 92112184 92112342 -57404695 - B2_Mm2 SINE B2 -17 178 2 2 1287 989 98 94 41 chr6 92112562 92112732 -57404305 - B2_Mm2 SINE B2 -15 180 2 2 1287 782 251 22 11 chr6 92112754 92112935 -57404102 - B3A SINE B2 -11 187 5 2 1287 288 158 0 0 chr6 92115084 92115141 -57401896 + (TATG)n Simple_repeat Simple_repeat 2 58 0 2 1287 366 272 94 75 chr6 92115491 92115650 -57401387 - RSINE1 SINE B4 -3 162 1 2 1287 640 234 23 0 chr6 92115840 92115968 -57401069 - B1_Mur1 SINE Alu -17 132 2 2 1287 821 96 44 7 chr6 92116054 92116191 -57400846 - URR1B DNA MER1_type -40 185 44 2 1287 232 229 33 0 chr6 92116218 92116279 -57400758 + B2_Mm2 SINE B2 9 71 -124 2 1287 334 211 144 0 chr6 92116270 92116360 -57400677 + B3 SINE B2 107 209 -7 2 1287 29 47 0 0 chr6 92116360 92116403 -57400634 + AT_rich Low_complexity Low_complexity 1 43 0 2 1287 313 303 0 0 chr6 92116678 92116767 -57400270 - B1F SINE Alu -51 98 10 2 1287 183 80 0 0 chr6 92116973 92116998 -57400039 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1287 982 53 0 0 chr6 92116998 92117129 -57399908 - B1_Mus2 SINE Alu 0 147 17 2 1287 479 267 9 9 chr6 92117151 92117257 -57399780 - RSINE1 SINE B4 -57 108 3 2 1287 369 220 74 42 chr6 92118858 92118953 -57398084 + PB1D10 SINE Alu 1 98 -51 2 1287 394 232 0 12 chr6 92118987 92119070 -57397967 + ID4_ SINE ID 2 83 0 2 1287 24 0 0 0 chr6 92119759 92119783 -57397254 + AT_rich Low_complexity Low_complexity 1 24 0 2 1287 273 286 8 158 chr6 92125958 92126091 -57390946 - B3A SINE B2 -2 196 84 2 1287 1257 96 26 21 chr6 92127033 92127224 -57389813 + B2_Mm2 SINE B2 2 193 -2 2 1287 247 278 0 62 chr6 92127376 92127472 -57389565 + BC1_Mm scRNA scRNA 8 97 -55 2 1287 3516 238 52 28 chr6 92128870 92129864 -57387173 - ORR1C2-int LTR MaLR -314 1056 39 2 1287 2057 159 35 8 chr6 92129889 92130263 -57386774 - ORR1C2 LTR MaLR 0 384 1 2 1287 262 326 0 0 chr6 92131940 92132026 -57385011 + B4 SINE B4 1 86 -206 2 1287 936 162 166 11 chr6 92132041 92132216 -57384821 + B3 SINE B2 1 202 -14 2 1287 623 213 21 35 chr6 92132227 92132368 -57384669 + B1_Mur1 SINE Alu 1 139 -10 2 1287 891 219 25 25 chr6 92132393 92132594 -57384443 + B3 SINE B2 1 201 -15 2 1287 297 68 0 0 chr6 92132594 92132638 -57384399 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1287 363 298 17 101 chr6 92132638 92132817 -57384220 + B4 SINE B4 125 288 -4 2 1287 182 220 59 20 chr6 92133151 92133202 -57383835 - MIRc SINE MIR -143 125 73 2 1287 803 191 179 5 chr6 92134381 92134565 -57382472 - B3 SINE B2 0 216 1 2 1287 246 141 125 0 chr6 92134684 92134748 -57382289 - L1MCa LINE L1 -5424 1084 1013 2 1287 370 236 126 9 chr6 92134885 92134996 -57382041 - B4A SINE B4 -165 127 4 2 1287 1427 55 33 6 chr6 92135046 92135229 -57381808 - B2_Mm2 SINE B2 -7 188 1 2 1287 1200 159 22 26 chr6 92135348 92135580 -57381457 + RMER6B LTR ERVK 2 232 -229 2 1287 1045 66 105 0 chr6 92135879 92136031 -57381006 + B2_Mm2 SINE B2 23 190 -5 2 1287 480 242 79 16 chr6 92136478 92136604 -57380433 + B4 SINE B4 155 288 -4 2 1287 229 259 0 0 chr6 92136606 92136664 -57380373 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1287 22 35 0 0 chr6 92137450 92137479 -57379558 + AT_rich Low_complexity Low_complexity 1 29 0 2 1287 1041 79 21 0 chr6 92137480 92137620 -57379417 - B1_Mus1 SINE Alu -1 147 5 2 1287 331 247 0 16 chr6 92140719 92140805 -57376232 - ID4 SINE ID -54 98 18 2 1287 388 274 9 70 chr6 92140825 92140939 -57376098 - PB1D10 SINE Alu -5 112 6 2 1287 1089 204 184 6 chr6 92142171 92142486 -57374551 + MTEa LTR MaLR 1 371 -8 2 1287 548 229 145 13 chr6 92142618 92142777 -57374260 + B3A SINE B2 3 182 -16 2 1287 213 39 0 0 chr6 92142837 92142863 -57374174 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1288 218 354 0 0 chr6 92143692 92143757 -57373280 - ID4 SINE ID -10 73 9 2 1288 477 263 128 22 chr6 92144248 92144427 -57372610 - B3A SINE B2 0 198 1 2 1288 577 140 18 12 chr6 92144711 92144877 -57372160 + (CA)n Simple_repeat Simple_repeat 2 168 0 2 1288 249 33 0 0 chr6 92145074 92145104 -57371933 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 2 1288 992 53 113 0 chr6 92145106 92145239 -57371798 - B1_Mus1 SINE Alu 0 148 1 2 1288 898 157 14 0 chr6 92145511 92145658 -57371379 + B1_Mur4 SINE Alu 1 149 -1 2 1288 315 261 113 24 chr6 92146205 92146383 -57370654 + L1MB7 LINE L1 5492 5694 -490 2 1288 368 305 48 41 chr6 92146406 92146424 -57370613 + B1_Mur1 SINE Alu 2 16 -133 2 1288 2941 43 0 0 chr6 92146424 92146770 -57370267 + ORR1A1 LTR MaLR 1 346 0 2 1288 368 305 48 41 chr6 92146770 92146898 -57370139 + B1_Mur1 SINE Alu 17 149 0 2 1288 415 255 265 35 chr6 92146911 92147186 -57369851 + L1MB7 LINE L1 5710 6043 -141 2 1288 2741 96 20 8 chr6 92147186 92147584 -57369453 + L1_Mus1 LINE L1 6165 6567 0 2 1288 415 255 265 35 chr6 92147584 92147678 -57369359 + L1MB7 LINE L1 6044 6163 -21 2 1288 637 238 14 27 chr6 92148971 92149118 -57367919 - B1F2 SINE Alu 0 149 5 2 1288 237 324 14 0 chr6 92150727 92150801 -57366236 - PB1D9 SINE Alu -11 109 35 2 1288 272 200 0 62 chr6 92150860 92150924 -57366113 + MER58C DNA MER1_type 141 200 -15 2 1288 877 171 7 0 chr6 92150950 92151096 -57365941 + B1_Mus1 SINE Alu 2 148 0 2 1288 778 194 0 0 chr6 92151122 92151256 -57365781 + B3 SINE B2 2 135 -81 2 1288 664 175 49 35 chr6 92153061 92153203 -57363834 + B1_Mus1 SINE Alu 5 148 0 2 1288 433 184 0 17 chr6 92153207 92153323 -57363714 + (TAA)n Simple_repeat Simple_repeat 1 114 0 2 1288 344 244 109 8 chr6 92153482 92153610 -57363427 - L1MA8 LINE L1 -101 6190 6050 2 1288 1177 98 6 0 chr6 92153848 92154021 -57363016 + B2_Mm2 SINE B2 2 175 -20 2 1288 630 220 159 12 chr6 92154419 92154589 -57362448 + B3A SINE B2 1 195 -3 2 1288 405 257 41 20 chr6 92154660 92154807 -57362230 + RMER15 LTR ERVL 421 570 -5 2 1288 298 214 43 0 chr6 92154918 92154988 -57362049 + MER3 DNA MER1_type 137 209 0 2 1288 272 226 0 0 chr6 92154943 92154996 -57362041 - MER3 DNA MER1_type -117 92 40 2 1288 641 233 38 0 chr6 92155469 92155602 -57361435 + B1_Mur2 SINE Alu 2 139 -10 2 1288 845 178 14 14 chr6 92155748 92155896 -57361141 + B1_Mur2 SINE Alu 1 148 -1 2 1288 1136 191 240 3 chr6 92156412 92156737 -57360300 + MT2A LTR ERVL 1 402 -131 2 1288 868 89 0 0 chr6 92156750 92156873 -57360164 - B2_Mm2 SINE B2 -70 125 3 2 1288 565 250 61 0 chr6 92157451 92157583 -57359454 - B1_Mur2 SINE Alu -8 141 2 2 1288 437 281 88 7 chr6 92157882 92158018 -57359019 + RSINE1 SINE B4 2 148 -17 2 1288 233 297 15 15 chr6 92158302 92158367 -57358670 + RSINE1 SINE B4 98 162 -3 2 1288 21 36 0 0 chr6 92158367 92158395 -57358642 + AT_rich Low_complexity Low_complexity 1 28 0 2 1288 1018 110 7 0 chr6 92158698 92158844 -57358193 + B1_Mus1 SINE Alu 2 148 0 2 1288 609 195 94 39 chr6 92158858 92159039 -57357998 + B2_Mm2 SINE B2 2 192 -3 2 1288 760 59 0 0 chr6 92159039 92159140 -57357897 + B2_Mm2 SINE B2 1 101 -94 2 1288 225 0 0 0 chr6 92159164 92159189 -57357848 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2 1288 204 125 0 0 chr6 92159211 92159243 -57357794 + (GGA)n Simple_repeat Simple_repeat 2 33 0 2 1288 918 237 86 0 chr6 92159254 92159452 -57357585 + B3 SINE B2 1 215 -1 2 1288 346 266 157 50 chr6 92159706 92159904 -57357133 + MIRc SINE MIR 18 236 -32 2 1288 183 42 0 0 chr6 92160139 92160163 -57356874 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1288 246 128 0 0 chr6 92160182 92160221 -57356816 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1288 637 148 0 53 chr6 92160264 92160378 -57356659 - B1_Mus1 SINE Alu -40 108 1 3 1288 1267 34 0 0 chr6 92160686 92160833 -57356204 + B1_Mus2 SINE Alu 1 147 0 3 1288 712 169 66 7 chr6 92161255 92161392 -57355645 + B1_Mur2 SINE Alu 3 147 -2 3 1288 469 248 85 0 chr6 92162256 92162385 -57354652 - B1F SINE Alu 0 149 10 3 1288 452 217 41 50 chr6 92162532 92162653 -57354384 + PB1D7 SINE Alu 1 120 0 3 1288 302 282 0 167 chr6 92162709 92162807 -57354230 + RSINE1 SINE B4 56 140 -25 3 1288 281 26 0 26 chr6 92162807 92162846 -57354191 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1288 840 92 0 0 chr6 92162846 92162964 -57354073 + (TA)n Simple_repeat Simple_repeat 1 119 0 3 1288 302 282 0 167 chr6 92162964 92162996 -57354041 + RSINE1 SINE B4 141 164 -1 3 1288 542 198 89 24 chr6 92163116 92163240 -57353797 + RSINE1 SINE B4 3 134 -31 3 1288 315 262 35 35 chr6 92163329 92163416 -57353621 + PB1 SINE Alu 28 114 -13 3 1288 591 165 0 27 chr6 92163895 92164007 -57353030 + B1_Mur1 SINE Alu 40 148 -1 3 1288 344 130 116 0 chr6 92165231 92165300 -57351737 + B3 SINE B2 123 199 -17 3 1288 573 238 0 31 chr6 92165500 92165630 -57351407 + ID_B1 SINE B4 99 224 0 3 1288 3471 75 24 4 chr6 92165671 92166137 -57350900 - MT2C_Mm LTR ERVL 0 475 1 3 1288 258 279 0 61 chr6 92166680 92166779 -57350258 - BC1_Mm scRNA scRNA -46 106 14 3 1288 333 47 0 0 chr6 92166902 92166945 -57350092 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1288 255 122 0 0 chr6 92166946 92166995 -57350042 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1288 466 289 44 0 chr6 92167301 92167436 -57349601 + ID_B1 SINE B4 84 224 0 3 1288 596 253 198 17 chr6 92167440 92167617 -57349420 + B3 SINE B2 1 209 -7 3 1288 235 268 294 7 chr6 92167725 92167868 -57349169 - MIR SINE MIR 0 262 79 3 1288 456 319 29 0 chr6 92168524 92168662 -57348375 + ID_B1 SINE B4 82 223 -1 3 1288 366 107 0 0 chr6 92168695 92168751 -57348286 + (CAGC)n Simple_repeat Simple_repeat 1 56 0 3 1288 459 280 9 0 chr6 92168752 92168859 -57348178 + B4A SINE B4 7 114 -178 3 1288 872 290 0 18 chr6 92168845 92169063 -57347974 + B4A SINE B4 71 284 -8 3 1288 207 146 0 0 chr6 92169078 92169119 -57347918 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1288 183 42 0 0 chr6 92169770 92169794 -57347243 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1288 268 290 132 27 chr6 92169944 92170164 -57346873 + L2 LINE L2 2521 2763 -656 3 1288 408 298 91 8 chr6 92170351 92170483 -57346554 - MLT1H LTR MaLR -316 233 91 3 1288 709 203 78 0 chr6 92170615 92170743 -57346294 - B1_Mur3 SINE Alu -2 147 10 3 1288 792 265 15 0 chr6 92170755 92170955 -57346082 - Lx8 LINE L1 -125 7348 7146 3 1288 202 318 182 31 chr6 92171570 92171729 -57345308 + MIRb SINE MIR 60 242 -26 3 1288 1154 41 7 20 chr6 92172652 92172801 -57344236 + B1_Mus1 SINE Alu 2 148 0 3 1288 26 30 0 0 chr6 92172842 92172875 -57344162 + AT_rich Low_complexity Low_complexity 1 33 0 3 1288 3609 118 50 14 chr6 92173001 92173566 -57343471 - RMER4B LTR ERVK 0 585 1 3 1288 347 286 20 39 chr6 92174025 92174127 -57342910 + PB1D7 SINE Alu 12 111 -9 3 1288 779 198 28 99 chr6 92174141 92174354 -57342683 - B3A SINE B2 0 198 1 3 1288 1478 38 16 5 chr6 92174383 92174567 -57342470 - B2_Mm2 SINE B2 -8 187 2 3 1288 251 270 165 22 chr6 92175468 92175559 -57341478 + PB1D10 SINE Alu 13 116 -1 3 1288 362 259 37 12 chr6 92175564 92175646 -57341391 + B3 SINE B2 4 87 -129 3 1288 472 198 10 10 chr6 92175643 92175740 -57341297 + MLT1D LTR MaLR 409 505 0 3 1288 246 296 72 105 chr6 92175757 92175970 -57341067 - LTR16B LTR ERVL -233 230 17 3 1288 247 324 47 9 chr6 92175971 92176077 -57340960 - MIR SINE MIR -145 117 8 3 1288 285 261 43 0 chr6 92176304 92176373 -57340664 + ID4 SINE ID 1 72 -11 3 1288 318 364 59 89 chr6 92176392 92176730 -57340307 - ORR1E LTR MaLR 0 359 32 3 1288 271 283 139 112 chr6 92176948 92177024 -57340013 + B4 SINE B4 79 153 -139 3 1288 1122 185 9 48 chr6 92177024 92177234 -57339803 + B3 SINE B2 1 202 -14 3 1288 216 67 0 0 chr6 92177235 92177265 -57339772 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 3 1288 271 283 139 112 chr6 92177265 92177373 -57339664 + B4 SINE B4 154 270 -22 3 1288 372 22 0 0 chr6 92177373 92177418 -57339619 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1288 252 0 0 0 chr6 92178628 92178656 -57338381 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1288 868 138 14 55 chr6 92178656 92178792 -57338245 - B1_Mur4 SINE Alu -13 137 6 3 1288 703 222 15 15 chr6 92179454 92179591 -57337446 + B1_Mur2 SINE Alu 1 137 -12 3 1288 243 0 0 0 chr6 92179594 92179621 -57337416 + (CCTG)n Simple_repeat Simple_repeat 1 27 0 3 1288 310 281 71 7 chr6 92179621 92179761 -57337276 + RMER17C LTR ERVK 185 333 -77 3 1288 444 223 39 0 chr6 92179997 92180100 -57336937 - PB1D10 SINE Alu 0 117 11 3 1288 266 311 11 32 chr6 92180021 92180114 -57336923 - ID_B1 SINE B4 -53 171 81 3 1288 191 217 0 80 chr6 92180122 92180172 -57336865 - L2c LINE L2 -17 3370 3325 3 1288 544 188 0 10 chr6 92182098 92182200 -57334837 + B1F2 SINE Alu 33 133 -16 3 1288 458 260 31 8 chr6 92182374 92182502 -57334535 - Charlie1a DNA MER1_type -3 1452 1322 3 1288 487 273 56 49 chr6 92182509 92182671 -57334366 - RSINE1 SINE B4 0 165 3 3 1288 703 249 119 5 chr6 92182712 92182906 -57334131 + B3 SINE B2 1 216 0 3 1288 237 282 74 33 chr6 92182922 92183043 -57333994 - Charlie1a DNA MER1_type -166 1289 1164 3 1288 200 280 86 78 chr6 92183104 92183220 -57333817 + MIR3 SINE MIR 14 130 -78 3 1288 2693 96 70 38 chr6 92183277 92183314 -57333723 + RMER4A LTR ERVK 1 42 -424 3 1288 180 0 0 0 chr6 92183314 92183334 -57333703 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1288 2693 96 70 38 chr6 92183334 92183741 -57333296 + RMER4A LTR ERVK 43 458 -8 3 1288 4630 55 10 19 chr6 92183852 92184444 -57332593 + L1Md_F2 LINE L1 5996 6582 0 3 1288 681 262 20 56 chr6 92184452 92184650 -57332387 - B3A SINE B2 -5 193 3 3 1288 322 277 0 0 chr6 92185652 92185717 -57331320 - L1MEg LINE L1 -4125 1959 1895 3 1288 933 81 51 14 chr6 92185717 92185855 -57331182 - B1_Mus1 SINE Alu 0 148 6 3 1288 207 69 0 0 chr6 92185888 92185917 -57331120 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1288 654 269 21 0 chr6 92185920 92186065 -57330972 - RSINE1 SINE B4 -13 152 5 3 1288 230 308 55 0 chr6 92186132 92186223 -57330814 - MLT1A1 LTR MaLR -10 398 303 3 1288 802 245 0 0 chr6 92186450 92186597 -57330440 + RSINE1 SINE B4 2 148 -17 3 1288 342 0 0 0 chr6 92186609 92186647 -57330390 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1288 2199 127 6 0 chr6 92186685 92187001 -57330036 - ORR1A2 LTR MaLR -8 319 2 3 1288 365 70 18 0 chr6 92187124 92187181 -57329856 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1288 480 369 71 14 chr6 92187303 92187468 -57329569 + LTR16C LTR ERVL 179 358 -131 3 1288 345 47 0 0 chr6 92187468 92187511 -57329526 + (TCCCC)n Simple_repeat Simple_repeat 4 46 0 3 1288 480 369 71 14 chr6 92187511 92187639 -57329398 + LTR16C LTR ERVL 359 489 0 3 1288 566 217 233 12 chr6 92188122 92188285 -57328752 + B3 SINE B2 3 201 -15 3 1288 233 282 62 100 chr6 92188413 92188543 -57328494 - PB1 SINE Alu 0 127 3 3 1288 372 289 30 92 chr6 92188543 92188628 -57328409 - ID SINE ID -146 78 4 3 1288 215 340 0 0 chr6 92188756 92188806 -57328231 + ID4_ SINE ID 29 78 -5 3 1288 5513 145 71 26 chr6 92188958 92189983 -57327054 - MTC-int LTR MaLR -166 1092 22 3 1288 1624 170 170 17 chr6 92189997 92190350 -57326687 - MTC LTR MaLR -14 407 1 3 1288 235 266 139 0 chr6 92190433 92190512 -57326525 - PB1 SINE Alu -35 92 3 3 1288 216 403 8 30 chr6 92190512 92190599 -57326438 - B4A SINE B4 -205 87 4 3 1288 189 0 0 0 chr6 92191058 92191079 -57325958 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1288 337 162 29 29 chr6 92191341 92191411 -57325626 - MLT1J LTR MaLR -339 173 104 3 1288 186 237 60 95 chr6 92193304 92193388 -57323649 + MIR SINE MIR 49 129 -79 3 1288 216 292 109 68 chr6 92194962 92195109 -57321928 + MIR3 SINE MIR 19 171 -37 3 1288 345 266 191 10 chr6 92195603 92195797 -57321240 + RMER15 LTR ERVL 343 571 -4 3 1288 1200 55 141 0 chr6 92196071 92196234 -57320803 + B2_Mm2 SINE B2 2 187 -8 3 1288 297 0 0 0 chr6 92196234 92196267 -57320770 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1288 518 354 69 25 chr6 92196532 92196851 -57320186 + MER74A LTR ERVL 120 452 -106 3 1288 396 0 0 0 chr6 92196864 92196908 -57320129 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 3 1288 339 25 0 0 chr6 92196920 92196960 -57320077 + (CCTA)n Simple_repeat Simple_repeat 2 41 0 3 1288 408 234 0 86 chr6 92196963 92197080 -57319957 - PB1D10 SINE Alu -3 114 8 3 1288 221 244 0 11 chr6 92198112 92198199 -57318838 + CT-rich Low_complexity Low_complexity 1 86 0 3 1288 558 224 126 71 chr6 92198599 92198782 -57318255 - B3A SINE B2 -5 193 1 3 1288 1614 191 232 14 chr6 92198831 92199262 -57317775 + RMER5 LTR ERV1 1 525 -9 3 1288 754 233 0 0 chr6 92199325 92199458 -57317579 + RSINE1 SINE B4 4 136 -29 3 1288 320 271 115 66 chr6 92199458 92199507 -57317530 + B2_Mm1a SINE B2 3 193 0 3 1288 183 156 0 0 chr6 92199529 92199561 -57317476 + (TATG)n Simple_repeat Simple_repeat 4 35 0 3 1288 864 248 40 0 chr6 92199620 92199822 -57317215 + B3 SINE B2 1 210 -6 4 1288 632 214 0 8 chr6 92199829 92199947 -57317090 - PB1D10 SINE Alu 0 117 1 4 1288 231 114 0 0 chr6 92199957 92199992 -57317045 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1288 949 249 5 25 chr6 92200160 92200358 -57316679 - B3 SINE B2 -20 196 3 4 1288 725 168 7 30 chr6 92200358 92200480 -57316557 + B1_Mur2 SINE Alu 31 149 0 4 1288 1358 77 27 5 chr6 92200624 92200808 -57316229 + B2_Mm1a SINE B2 2 189 -4 4 1288 1201 82 6 0 chr6 92200810 92200969 -57316068 + B2_Mm1a SINE B2 1 160 -33 4 1288 351 0 0 0 chr6 92200969 92201008 -57316029 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 1288 225 0 0 0 chr6 92201365 92201390 -57315647 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1288 1266 41 0 0 chr6 92201390 92201537 -57315500 - B1_Mus2 SINE Alu 0 147 1 4 1288 762 189 8 0 chr6 92201792 92201919 -57315118 - B1_Mur1 SINE Alu -20 129 2 4 1288 246 282 20 168 chr6 92201919 92201937 -57315100 - MT2B LTR ERVL -322 275 153 4 1288 623 183 120 15 chr6 92202792 92202925 -57314112 - B1_Mur1 SINE Alu -1 148 2 4 1288 289 138 0 44 chr6 92203112 92203180 -57313857 + CT-rich Low_complexity Low_complexity 6 70 0 4 1288 280 291 70 51 chr6 92203192 92203348 -57313689 + MTEa LTR MaLR 202 360 -19 4 1288 324 333 95 13 chr6 92203663 92203821 -57313216 + MLT1K LTR MaLR 81 251 -344 4 1288 708 252 0 0 chr6 92203844 92203991 -57313046 - B1_Mur1 SINE Alu 0 149 3 4 1288 575 327 7 26 chr6 92204020 92204171 -57312866 - RSINE1 SINE B4 -16 149 2 4 1288 1051 219 27 23 chr6 92204229 92204449 -57312588 - MTD LTR MaLR -3 416 196 4 1288 279 71 0 0 chr6 92204467 92204509 -57312528 + (TTTTTG)n Simple_repeat Simple_repeat 4 45 0 4 1288 1151 101 0 0 chr6 92204509 92204657 -57312380 - B1_Mus1 SINE Alu 0 148 1 4 1288 360 330 0 0 chr6 92204657 92204745 -57312292 - MTD LTR MaLR -208 211 124 4 1288 1989 152 106 0 chr6 92204747 92205096 -57311941 - ORR1B1 LTR MaLR -8 386 1 4 1288 605 212 8 8 chr6 92205096 92205213 -57311824 - MTD LTR MaLR -291 130 14 4 1288 200 34 0 33 chr6 92205271 92205301 -57311736 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 4 1288 356 212 11 45 chr6 92205387 92205476 -57311561 + MLT1L LTR MaLR 504 589 -21 4 1288 1707 232 11 29 chr6 92205476 92205853 -57311184 + ORR1D2 LTR MaLR 1 370 0 4 1288 252 0 0 0 chr6 92206125 92206153 -57310884 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1288 705 241 0 0 chr6 92206469 92206602 -57310435 - RSINE1 SINE B4 -21 144 12 4 1288 237 330 42 11 chr6 92206641 92206736 -57310301 - MIR SINE MIR -79 183 86 4 1288 22 0 0 0 chr6 92207973 92207995 -57309042 + AT_rich Low_complexity Low_complexity 1 22 0 4 1288 748 229 82 27 chr6 92208434 92208618 -57308419 + ID_B1 SINE B4 1 194 -30 4 1288 789 252 0 0 chr6 92208622 92208765 -57308272 + B1_Mur1 SINE Alu 6 148 -1 4 1288 303 243 57 0 chr6 92208777 92208847 -57308190 + MTEa LTR MaLR 23 96 -283 4 1288 766 210 57 48 chr6 92208882 92209092 -57307945 + MTEa LTR MaLR 168 379 0 4 1288 965 241 75 122 chr6 92209909 92210254 -57306783 - MTEa LTR MaLR -38 341 13 4 1288 1144 271 40 22 chr6 92210284 92210608 -57306429 - RMER15 LTR ERVL 0 575 246 4 1288 907 146 29 0 chr6 92210833 92210970 -57306067 - B3 SINE B2 -75 141 1 4 1288 444 116 0 0 chr6 92210979 92211065 -57305972 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 4 1288 255 234 152 50 chr6 92212240 92212274 -57304763 - PB1D9 SINE Alu 0 147 108 4 1288 1173 82 7 0 chr6 92212274 92212421 -57304616 - B1_Mus1 SINE Alu 0 148 1 4 1288 255 237 77 39 chr6 92212421 92212510 -57304527 - PB1D9 SINE Alu -13 107 16 4 1288 216 175 25 0 chr6 92212547 92212587 -57304450 - B3A SINE B2 -121 77 37 4 1288 844 186 14 28 chr6 92213389 92213533 -57303504 - B1_Mur1 SINE Alu -7 142 1 4 1288 730 243 53 0 chr6 92213542 92213711 -57303326 - ID_B1 SINE B4 -18 206 29 4 1288 381 250 0 103 chr6 92213791 92213898 -57303139 - PB1 SINE Alu -3 124 29 4 1288 297 197 0 174 chr6 92214401 92214487 -57302550 - B4 SINE B4 0 292 222 4 1288 948 177 47 6 chr6 92214526 92214705 -57302332 - B3 SINE B2 -10 188 1 4 1288 446 274 64 132 chr6 92214742 92214977 -57302060 - B4 SINE B4 -66 226 8 4 1288 185 122 94 75 chr6 92215139 92215192 -57301845 - MIRm SINE MIR -146 130 77 4 1288 250 244 49 49 chr6 92215209 92215291 -57301746 + ID4_ SINE ID 2 83 0 4 1288 299 281 253 39 chr6 92215348 92215526 -57301511 + B3 SINE B2 1 216 0 4 1288 706 291 62 17 chr6 92215539 92215717 -57301320 + B3A SINE B2 25 210 -6 4 1288 613 222 0 25 chr6 92216572 92216692 -57300345 - ID_B1 SINE B4 0 224 108 4 1288 743 228 0 26 chr6 92216766 92216919 -57300118 - B1_Mur2 SINE Alu 0 149 1 4 1288 855 255 62 5 chr6 92216923 92217132 -57299905 - ID_B1 SINE B4 -1 223 3 4 1288 390 261 53 32 chr6 92217547 92217642 -57299395 + PB1D10 SINE Alu 13 109 -8 4 1288 261 0 0 0 chr6 92217711 92217740 -57299297 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 4 1288 308 354 40 36 chr6 92218017 92218250 -57298787 + MLT1B LTR MaLR 17 387 -3 4 1288 184 245 0 75 chr6 92218356 92218409 -57298628 - MIR SINE MIR -100 162 114 4 1288 252 366 82 5 chr6 92218581 92218776 -57298261 + MLT1K LTR MaLR 168 377 -218 4 1288 261 315 78 35 chr6 92219823 92219938 -57297099 + MLT1B LTR MaLR 260 379 -11 4 1288 325 304 93 86 chr6 92219948 92220099 -57296938 - MER115 DNA Tip100 -159 534 383 4 1288 850 190 30 6 chr6 92220283 92220447 -57296590 - MT2A LTR ERVL -363 170 3 4 1288 1089 194 17 63 chr6 92220554 92220791 -57296246 - MTC LTR MaLR 0 421 196 4 1288 714 155 28 28 chr6 92220816 92221064 -57295973 + CT-rich Low_complexity Low_complexity 1 248 0 4 1288 1185 29 0 47 chr6 92221065 92221327 -57295710 + (TTTC)n Simple_repeat Simple_repeat 1 249 0 4 1288 970 168 67 67 chr6 92221597 92221690 -57295347 - MTC LTR MaLR -211 210 108 4 1288 1479 122 13 22 chr6 92221690 92221917 -57295120 - URR1B DNA MER1_type 0 225 1 4 1288 970 168 67 67 chr6 92221917 92222033 -57295004 - MTC LTR MaLR -314 107 1 4 1288 604 284 55 97 chr6 92222293 92222806 -57294231 - RLTR11B LTR ERVK -11 517 5 4 1288 648 89 0 0 chr6 92223334 92223424 -57293613 - B1_Mus1 SINE Alu -58 90 1 4 1288 257 272 42 32 chr6 92223766 92223861 -57293176 + RLTR42-int LTR ERVK 4340 4435 -1087 4 1288 909 116 0 0 chr6 92224364 92224537 -57292500 + (TC)n Simple_repeat Simple_repeat 2 174 0 4 1288 717 71 18 9 chr6 92224668 92224782 -57292255 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 1288 275 158 53 0 chr6 92224852 92224928 -57292109 + MT2A LTR ERVL 452 531 -2 4 1288 2387 280 69 10 chr6 92224943 92225874 -57291163 + MERVL_2A-int LTR ERVL 2633 3809 -1952 4 1288 245 373 12 12 chr6 92226139 92226310 -57290727 + (TATATG)n Simple_repeat Simple_repeat 6 176 0 4 1288 201 315 11 11 chr6 92226354 92226444 -57290593 + (TATG)n Simple_repeat Simple_repeat 3 92 0 4 1288 429 186 86 26 chr6 92226740 92226856 -57290181 + Lx5 LINE L1 6928 7050 0 4 1288 387 56 0 0 chr6 92226889 92226943 -57290094 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 4 1288 1707 172 47 85 chr6 92226956 92227324 -57289713 - ORR1B1 LTR MaLR 0 394 42 4 1288 3053 99 97 145 chr6 92227324 92228022 -57289015 - ORR1B1-int LTR MaLR 0 1963 1299 4 1288 10058 47 4 2 chr6 92228028 92229949 -57287088 - L1Md_F2 LINE L1 -14 6568 4642 4 1288 3632 166 26 70 chr6 92229950 92230854 -57286183 - ORR1B1-int LTR MaLR -649 1314 450 4 1288 2232 178 22 7 chr6 92231399 92231856 -57285181 - ORR1B1-int LTR MaLR -1499 464 1 4 1288 337 109 18 0 chr6 92231856 92231911 -57285126 - ORR1B1 LTR MaLR 0 394 339 4 1288 2686 217 16 15 chr6 92231913 92232511 -57284526 - L1VL4 LINE L1 -5465 1095 512 4 1288 413 331 42 0 chr6 92232529 92232671 -57284366 + RSINE1 SINE B4 2 149 -16 4 1288 1074 139 6 0 chr6 92232676 92232856 -57284181 - ORR1B1 LTR MaLR -87 240 60 4 1288 1392 183 126 9 chr6 92232838 92233164 -57283873 - ORR1B1 LTR MaLR -28 366 3 4 1288 213 331 8 0 chr6 92233166 92233287 -57283750 + (CA)n Simple_repeat Simple_repeat 1 122 0 4 1288 225 0 0 0 chr6 92233534 92233559 -57283478 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 4 1288 206 151 18 36 chr6 92233563 92233618 -57283419 + A-rich Low_complexity Low_complexity 3 56 0 4 1288 240 86 0 0 chr6 92233702 92233737 -57283300 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1288 315 283 23 17 chr6 92234004 92234180 -57282857 + (CCCTAA)n Simple_repeat Simple_repeat 4 180 0 4 1288 244 320 11 54 chr6 92234195 92234380 -57282657 + (CCCTAA)n Simple_repeat Simple_repeat 3 179 0 4 1288 454 264 5 68 chr6 92234446 92234637 -57282400 + (CCCTAA)n Simple_repeat Simple_repeat 2 180 0 4 1288 196 214 39 8 chr6 92234710 92234837 -57282200 + (CCCTAA)n Simple_repeat Simple_repeat 2 132 0 4 1288 1716 153 39 82 chr6 92235306 92235670 -57281367 + ORR1B1 LTR MaLR 47 394 0 4 1288 1346 111 23 5 chr6 92235832 92236049 -57280988 + URR1A DNA MER1_type 1 221 -5 4 1288 265 175 262 0 chr6 92236998 92237078 -57279959 + 5S rRNA rRNA 1 101 -20 4 1288 347 332 53 5 chr6 92237561 92237767 -57279270 - MER31A LTR ERV1 -107 378 163 4 1288 240 111 0 0 chr6 92238697 92238742 -57278295 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4 1288 982 131 28 0 chr6 92238748 92238893 -57278144 - B1_Mur3 SINE Alu 0 149 1 4 1288 219 139 0 0 chr6 92239584 92239620 -57277417 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1288 441 104 0 0 chr6 92239619 92239696 -57277341 + (GA)n Simple_repeat Simple_repeat 1 77 0 4 1288 369 0 0 0 chr6 92239820 92239861 -57277176 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1288 3513 53 0 0 chr6 92240193 92240623 -57276414 + L1_Mus1 LINE L1 6138 6567 0 4 1288 312 252 55 98 chr6 92240841 92241004 -57276033 - RLTR42-int LTR ERVK -1253 4269 4114 4 1288 270 0 0 0 chr6 92241687 92241717 -57275320 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1288 664 166 294 19 chr6 92241719 92241879 -57275158 - B3 SINE B2 -10 206 3 4 1288 432 0 0 0 chr6 92242801 92242849 -57274188 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1288 1261 197 81 19 chr6 92242992 92243302 -57273735 - ORR1D2 LTR MaLR 0 370 42 4 1288 313 281 0 30 chr6 92243316 92243415 -57273622 + CT-rich Low_complexity Low_complexity 5 100 0 5 1288 692 229 27 14 chr6 92243417 92243563 -57273474 - B1_Mur1 SINE Alu -1 148 1 5 1288 1868 67 8 0 chr6 92243816 92244054 -57272983 + L1_Mus2 LINE L1 6326 6565 -1 5 1288 736 301 21 28 chr6 92244204 92244494 -57272543 - RLTR42-int LTR ERVK -4134 1388 1101 5 1288 303 216 0 0 chr6 92244834 92244885 -57272152 - RLTR42-int LTR ERVK -4422 1100 1050 5 1288 445 161 0 12 chr6 92245003 92245080 -57271957 - MTC LTR MaLR 0 421 346 5 1288 2230 138 3 14 chr6 92245080 92245448 -57271589 + MTB_Mm LTR MaLR 1 364 -43 5 1288 258 105 0 0 chr6 92245448 92245486 -57271551 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1288 952 147 81 12 chr6 92245525 92245697 -57271340 - MTC LTR MaLR -70 351 168 5 1288 1933 157 13 160 chr6 92247013 92247281 -57269756 - ORR1C2 LTR MaLR -1 383 174 5 1288 711 65 0 0 chr6 92247281 92247374 -57269663 + (GGA)n Simple_repeat Simple_repeat 3 95 0 5 1288 1933 157 13 160 chr6 92247374 92247554 -57269483 - ORR1C2 LTR MaLR -211 173 1 5 1288 226 163 47 0 chr6 92247970 92248013 -57269024 + L1MB4 LINE L1 5938 5982 -198 5 1288 324 310 52 0 chr6 92248164 92248280 -57268757 - RMER15 LTR ERVL -1 574 453 5 1288 1847 107 70 3 chr6 92248282 92248581 -57268456 + ORR1A2 LTR MaLR 1 319 -8 5 1288 425 214 40 20 chr6 92248591 92248691 -57268346 - RMER15 LTR ERVL -137 438 337 5 1288 696 164 16 8 chr6 92248891 92249020 -57268017 - B1_Mur4 SINE Alu 0 150 21 5 1288 1349 90 10 16 chr6 92249758 92249950 -57267087 - B2_Mm1t SINE B2 0 193 3 5 1288 853 278 4 18 chr6 92249957 92250184 -57266853 - ID_B1 SINE B4 0 224 1 5 1288 7888 79 18 1 chr6 92250347 92251435 -57265602 - L1VL2 LINE L1 -630 2985 1880 5 1288 6083 84 30 5 chr6 92251431 92252483 -57264554 - L1VL2 LINE L1 -2352 1263 179 5 1288 283 220 0 0 chr6 92252680 92252739 -57264298 - ID_B1 SINE B4 0 224 166 5 1288 252 210 48 0 chr6 92252686 92252748 -57264289 - B1F SINE Alu -6 143 79 5 1288 378 0 0 0 chr6 92252991 92253033 -57264004 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1288 22 0 0 0 chr6 92253998 92254020 -57263017 + AT_rich Low_complexity Low_complexity 1 22 0 5 1288 388 261 257 25 chr6 92254597 92254912 -57262125 + L1M3 LINE L1 4736 5127 -1019 5 1288 2791 80 10 47 chr6 92254969 92255378 -57261659 + L1Md_F2 LINE L1 6187 6580 -2 5 1288 234 316 12 12 chr6 92256030 92256110 -57260927 - MLT1B LTR MaLR -310 80 1 5 1288 298 338 109 13 chr6 92256572 92256728 -57260309 + MIR SINE MIR 82 252 -10 5 1288 418 197 14 0 chr6 92256783 92256854 -57260183 - ID4 SINE ID -9 74 3 5 1288 823 311 41 8 chr6 92256879 92257125 -57259912 + B4A SINE B4 33 286 -6 5 1288 387 270 16 23 chr6 92257423 92257552 -57259485 + Tigger15a DNA TcMar 251 378 -337 5 1288 6755 224 51 53 chr6 92258020 92258780 -57258257 + Lx9 LINE L1 1204 1948 -3899 5 1288 200 86 29 0 chr6 92258780 92258815 -57258222 + (CAA)n Simple_repeat Simple_repeat 1 36 0 5 1288 6755 224 51 53 chr6 92258815 92260297 -57256740 + Lx9 LINE L1 1949 3442 -2405 5 1288 4909 211 89 55 chr6 92260316 92261480 -57255557 + Lx9 LINE L1 3960 5164 -683 5 1288 1201 238 136 158 chr6 92261480 92262025 -57255012 + MT2A LTR ERVL 1 533 0 5 1288 4909 211 89 55 chr6 92262025 92262113 -57254924 + Lx9 LINE L1 5165 5254 -593 5 1288 2240 152 11 6 chr6 92262113 92262478 -57254559 + ORR1B2 LTR MaLR 1 367 0 5 1288 4909 211 89 55 chr6 92262478 92262801 -57254236 + Lx9 LINE L1 5255 5590 -257 5 1288 787 239 11 11 chr6 92262816 92262998 -57254039 + ORR1D1 LTR MaLR 1 182 -192 5 1288 352 136 351 9 chr6 92262991 92263102 -57253935 - B2_Mm2 SINE B2 0 195 47 5 1288 1234 114 11 0 chr6 92263154 92263329 -57253708 - B2_Mm1t SINE B2 -14 179 3 5 1288 628 222 155 6 chr6 92263334 92263515 -57253522 + ORR1D1 LTR MaLR 167 374 0 5 1288 832 237 15 10 chr6 92263515 92263711 -57253326 + ORR1D1-int LTR MaLR 1 197 -1173 5 1288 288 0 0 0 chr6 92263732 92263764 -57253273 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1288 976 143 6 12 chr6 92263764 92263934 -57253103 + RMER6B LTR ERVK 293 461 0 5 1288 1129 283 124 51 chr6 92263934 92264759 -57252278 + Lx9 LINE L1 5784 6784 -860 5 1288 441 0 0 0 chr6 92264784 92264833 -57252204 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1288 259 342 52 7 chr6 92264833 92264986 -57252051 - Lx9 LINE L1 -187 7457 7298 5 1288 256 276 120 20 chr6 92264978 92265078 -57251959 - Lx9 LINE L1 -1130 6514 6405 5 1288 1303 271 102 45 chr6 92265042 92265822 -57251215 + Lx9 LINE L1 6805 7629 -15 5 1288 792 179 0 0 chr6 92265913 92266064 -57250973 + CT-rich Low_complexity Low_complexity 2 152 0 5 1288 1458 64 16 5 chr6 92267190 92267378 -57249659 - B2_Mm2 SINE B2 -5 190 1 5 1288 21 36 0 0 chr6 92267857 92267885 -57249152 + AT_rich Low_complexity Low_complexity 1 28 0 5 1288 2068 168 69 5 chr6 92267989 92268378 -57248659 - MTD LTR MaLR 0 419 6 5 1288 525 112 76 33 chr6 92268419 92268511 -57248526 - B1_Mus2 SINE Alu -2 145 50 5 1288 1840 152 16 6 chr6 92268562 92268881 -57248156 - ORR1B1 LTR MaLR -72 322 1 5 1288 619 216 80 4 chr6 92268901 92269167 -57247870 + ORR1D1 LTR MaLR 6 374 0 5 1288 2063 290 92 11 chr6 92269187 92269944 -57247093 + Lx9 LINE L1 6813 7631 -13 5 1288 22 35 0 0 chr6 92269953 92269982 -57247055 + AT_rich Low_complexity Low_complexity 1 29 0 5 1288 23 33 0 0 chr6 92271251 92271281 -57245756 + AT_rich Low_complexity Low_complexity 1 30 0 5 1288 23 33 0 0 chr6 92271388 92271418 -57245619 + AT_rich Low_complexity Low_complexity 1 30 0 5 1288 279 0 0 0 chr6 92271500 92271531 -57245506 + (CAA)n Simple_repeat Simple_repeat 3 33 0 5 2 42118 5 0 1 chr6 92271579 92278363 -57238674 - L1Md_A LINE L1 0 6582 1 5 1289 444 278 31 46 chr6 92278361 92278557 -57238480 - L1MA6 LINE L1 -185 6115 5923 5 1289 242 282 0 34 chr6 92278762 92278850 -57238187 + L1_Rod LINE L1 313 397 -6775 5 1289 1231 47 0 0 chr6 92278862 92279010 -57238027 - B1_Mus1 SINE Alu 0 148 1 5 1289 1366 242 65 11 chr6 92279186 92279553 -57237484 + L1_Rod LINE L1 314 700 -6472 5 1289 2352 203 39 151 chr6 92279551 92280638 -57236399 + L1_Rod LINE L1 4441 5347 -500 5 1289 439 220 11 0 chr6 92280636 92280727 -57236310 + Lx9 LINE L1 6384 6475 -1169 5 1289 5177 168 77 22 chr6 92280849 92281957 -57235080 - MTC-int LTR MaLR -89 1169 1 5 1289 1825 152 6 16 chr6 92281964 92282279 -57234758 - MTC LTR MaLR -6 415 104 5 1289 832 213 18 106 chr6 92282308 92282534 -57234503 - Lx6 LINE L1 -53 7407 7202 5 1289 1148 272 136 49 chr6 92282538 92283093 -57233944 - Lx6 LINE L1 -1 7459 6483 5 1289 2205 186 91 21 chr6 92283095 92283639 -57233398 - Lx6 LINE L1 -688 6362 5760 5 1289 506 194 0 20 chr6 92283639 92283739 -57233298 - MTC LTR MaLR -323 98 1 5 1289 4238 97 22 2 chr6 92284271 92284858 -57232179 - Lx3A LINE L1 -6 6975 6377 5 1289 238 270 0 13 chr6 92285235 92285310 -57231727 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 5 1289 210 268 28 14 chr6 92285374 92285446 -57231591 - MIR SINE MIR -171 91 19 5 1289 1639 170 114 4 chr6 92285590 92285964 -57231073 - MTD LTR MaLR -14 405 6 5 1289 398 198 0 23 chr6 92285979 92286067 -57230970 - MTD-int LTR MaLR 0 1258 1173 5 1289 737 231 86 68 chr6 92286078 92286403 -57230634 - Lx9 LINE L1 -7 7637 7307 5 1289 2023 271 66 32 chr6 92286473 92287091 -57229946 - Lx9 LINE L1 -456 7188 6550 5 1289 223 177 32 0 chr6 92287091 92287153 -57229884 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1289 782 245 40 28 chr6 92287157 92287444 -57229593 + Lx9 LINE L1 4164 4453 -1427 5 1289 837 312 43 25 chr6 92287454 92287779 -57229258 - RLTR18B LTR ERVK 0 512 182 5 1289 784 275 24 100 chr6 92287819 92288150 -57228887 - RLTR18 LTR ERVK -306 310 5 5 1289 4215 206 92 50 chr6 92288194 92288825 -57228212 + Lx9 LINE L1 4482 5125 -722 5 1289 2587 53 0 0 chr6 92288825 92289144 -57227893 + L1_Mus1 LINE L1 6249 6567 0 5 1289 4215 206 92 50 chr6 92289144 92289264 -57227773 + Lx9 LINE L1 5126 5231 -616 5 1289 189 74 0 0 chr6 92289264 92289291 -57227746 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 5 1289 4215 223 94 43 chr6 92289291 92290006 -57227031 + Lx9 LINE L1 5232 6048 -1596 5 1289 554 172 29 90 chr6 92290130 92290398 -57226639 - MTD-int LTR MaLR -71 1187 1007 5 1289 2111 257 47 29 chr6 92290419 92291443 -57225594 + Lx5 LINE L1 6081 7032 -18 5 1289 1924 234 109 64 chr6 92291462 92292356 -57224681 - MTD-int LTR MaLR -171 927 1 5 1289 2180 136 48 16 chr6 92292363 92292764 -57224273 - MTD LTR MaLR -14 405 1 5 1289 800 291 116 23 chr6 92292928 92293367 -57223670 - Lx8 LINE L1 -10 7463 6984 5 1289 578 245 255 0 chr6 92293408 92293620 -57223417 - Lx8 LINE L1 -1125 6348 6083 5 1289 1660 197 100 9 chr6 92293706 92294126 -57222911 + L1_Mur3 LINE L1 4815 5272 -608 5 1289 366 23 0 0 chr6 92294146 92294189 -57222848 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1289 774 22 0 0 chr6 92294189 92294281 -57222756 + (GAA)n Simple_repeat Simple_repeat 3 94 0 5 1289 336 203 0 0 chr6 92294281 92294350 -57222687 + L1_Mur3 LINE L1 5261 5329 -551 5 1289 482 0 17 0 chr6 92294484 92294542 -57222495 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1289 2581 144 43 99 chr6 92294561 92295124 -57221913 + RMER15 LTR ERVL 45 575 0 5 1289 264 244 0 35 chr6 92295126 92295211 -57221826 + Lx7 LINE L1 7601 7682 -14 5 1289 827 235 105 23 chr6 92295199 92295456 -57221581 + L1_Mur3 LINE L1 5339 5616 -264 5 1289 860 214 53 0 chr6 92295484 92295671 -57221366 - B3A SINE B2 0 198 2 5 1289 235 297 11 32 chr6 92296768 92296862 -57220175 - Tigger5 DNA MER2_type -4 2402 2311 5 1289 180 0 0 0 chr6 92296885 92296905 -57220132 + (CACAG)n Simple_repeat Simple_repeat 1 20 0 5 1289 189 0 0 0 chr6 92297354 92297375 -57219662 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1289 854 284 47 14 chr6 92297412 92297691 -57219346 + B4 SINE B4 3 290 -2 5 1289 819 239 129 57 chr6 92298121 92298366 -57218671 + RLTR28B LTR ERVL 3 287 -194 5 1289 2048 99 17 72 chr6 92298366 92298714 -57218323 + ORR1A4 LTR MaLR 1 329 0 5 1289 819 231 476 62 chr6 92298714 92298883 -57218154 + RLTR28B LTR ERVL 288 504 -20 5 1289 341 277 120 13 chr6 92298956 92299106 -57217931 + RMER5 LTR ERV1 47 212 -322 5 1289 702 222 26 39 chr6 92299134 92299316 -57217721 + B3 SINE B2 1 188 -5 5 1289 243 0 0 0 chr6 92299580 92299607 -57217430 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1289 2345 141 10 15 chr6 92299986 92300382 -57216655 - ORR1B1 LTR MaLR 0 394 1 5 1289 330 244 14 150 chr6 92300635 92300775 -57216262 + MER74A LTR ERVL 438 558 0 5 1289 244 122 20 0 chr6 92300898 92300947 -57216090 - B3 SINE B2 -10 206 157 5 1289 222 216 296 19 chr6 92301038 92301146 -57215891 - MIR SINE MIR -68 200 67 5 1289 1106 203 185 25 chr6 92302361 92302680 -57214357 + ORR1D1 LTR MaLR 4 373 -1 5 1289 4835 207 89 29 chr6 92302681 92303871 -57213166 + ORR1D1-int LTR MaLR 1 1264 -106 5 1289 942 144 46 11 chr6 92303871 92304046 -57212991 + B2_Mm2 SINE B2 1 181 -14 5 1289 4835 207 89 29 chr6 92304046 92304071 -57212966 + ORR1D1-int LTR MaLR 1265 1289 -81 5 1289 667 309 108 93 chr6 92304060 92304274 -57212763 - MLT1F1 LTR MaLR -190 370 154 5 1289 605 141 101 72 chr6 92305045 92305065 -57211972 - B1_Mus2 SINE Alu 0 147 135 5 1289 753 61 0 0 chr6 92305065 92305164 -57211873 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 5 1289 605 141 101 72 chr6 92305164 92305281 -57211756 - B1_Mus2 SINE Alu -13 134 6 5 1289 4307 236 88 4 chr6 92305298 92305412 -57211625 - RMER1A Other Other -1 1029 876 5 1289 423 0 0 0 chr6 92305412 92305459 -57211578 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1289 4307 243 93 21 chr6 92305459 92306551 -57210486 - RMER1A Other Other -155 875 2 5 1289 219 146 0 0 chr6 92307102 92307143 -57209894 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1289 1064 286 144 48 chr6 92307144 92307797 -57209240 - L1M2 LINE L1 -755 5388 4673 6 1289 206 130 36 18 chr6 92307838 92307893 -57209144 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1289 5092 216 72 14 chr6 92308450 92310255 -57206782 - MERVL_2A-int LTR ERVL -2207 3554 1646 6 1289 279 271 68 54 chr6 92310319 92310467 -57206570 - Lx9 LINE L1 -174 7470 7321 6 1289 344 138 35 0 chr6 92310504 92310562 -57206475 + MERVL_2A-int LTR ERVL 2694 2753 -3008 6 1289 413 267 32 48 chr6 92310607 92310733 -57206304 + Lx9 LINE L1 6399 6522 -1122 6 1289 3079 268 45 25 chr6 92310715 92311618 -57205419 - Lx9 LINE L1 -325 7319 6399 6 1289 358 126 38 0 chr6 92311657 92311721 -57205316 - MERVL_2A-int LTR ERVL -3008 2753 2639 6 1289 24 0 0 0 chr6 92312024 92312048 -57204989 + AT_rich Low_complexity Low_complexity 1 24 0 6 1289 279 79 0 0 chr6 92313241 92313279 -57203758 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 6 1289 564 135 27 0 chr6 92314050 92314161 -57202876 + CT-rich Low_complexity Low_complexity 1 114 0 6 1289 900 149 0 57 chr6 92314165 92314322 -57202715 - B1_Mur4 SINE Alu -1 149 2 6 1289 252 0 0 0 chr6 92315787 92315815 -57201222 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1289 260 234 62 0 chr6 92317499 92317563 -57199474 + Lx8 LINE L1 4291 4358 -1522 6 1289 309 89 0 0 chr6 92317564 92317609 -57199428 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1289 514 176 8 8 chr6 92317798 92317918 -57199119 + L1M3 LINE L1 4410 4529 -1611 6 1289 238 146 40 40 chr6 92318251 92318301 -57198736 + Lx8 LINE L1 4500 4549 -1331 6 1289 2637 276 73 60 chr6 92318446 92318813 -57198224 + Lx8 LINE L1 4612 5003 -1140 6 1289 4278 80 12 157 chr6 92318813 92319691 -57197346 + RMER17A LTR ERVK 1 751 0 6 1289 2637 270 65 72 chr6 92319691 92320660 -57196377 + Lx8 LINE L1 4973 5912 -1561 6 1289 711 223 40 7 chr6 92320631 92320780 -57196257 + Lx8 LINE L1 6631 6784 -689 6 1289 31 0 0 0 chr6 92324389 92324420 -57192617 + AT_rich Low_complexity Low_complexity 1 31 0 6 1289 255 308 74 40 chr6 92327955 92328104 -57188933 + L1M5 LINE L1 5629 5782 -380 6 1289 402 307 103 15 chr6 92328103 92328364 -57188673 + L1MC4 LINE L1 6785 7068 -974 6 1289 230 229 0 20 chr6 92328656 92328705 -57188332 + CT-rich Low_complexity Low_complexity 3 50 0 6 1289 225 0 0 0 chr6 92328707 92328732 -57188305 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1289 412 236 38 38 chr6 92328733 92328865 -57188172 - Lx7 LINE L1 -297 7399 7268 6 1289 460 288 192 7 chr6 92330201 92330488 -57186549 - MER2 DNA MER2_type -5 340 1 6 1289 333 0 0 0 chr6 92332465 92332502 -57184535 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1289 663 184 0 0 chr6 92332785 92332921 -57184116 + (TG)n Simple_repeat Simple_repeat 2 137 0 6 1289 532 296 66 84 chr6 92333886 92334110 -57182927 + MER58A DNA MER1_type 2 236 -2184 6 1289 315 0 0 0 chr6 92334189 92334224 -57182813 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1289 21 0 0 0 chr6 92334453 92334474 -57182563 + GC_rich Low_complexity Low_complexity 1 21 0 6 1289 262 235 77 22 chr6 92334937 92335073 -57181964 - L2b LINE L2 -236 3190 3049 6 1289 3730 44 0 0 chr6 92335104 92335540 -57181497 + L1_Mus1 LINE L1 6130 6565 -2 6 1289 528 16 0 0 chr6 92335834 92335895 -57181142 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1289 513 0 0 0 chr6 92335895 92335951 -57181086 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1289 476 232 21 0 chr6 92336235 92336330 -57180707 + RSINE1 SINE B4 56 152 -13 6 1289 307 256 37 37 chr6 92337243 92337324 -57179713 - ID4_ SINE ID -2 81 1 6 1289 189 274 0 0 chr6 92338282 92338344 -57178693 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1289 586 264 108 0 chr6 92338346 92338494 -57178543 - RSINE1 SINE B4 0 165 2 6 1289 633 221 16 16 chr6 92339122 92339251 -57177786 - MTEa LTR MaLR -8 371 243 6 1289 248 243 15 0 chr6 92340829 92340894 -57176143 + L1MC LINE L1 5593 5664 -460 6 1289 3427 13 3 0 chr6 92341004 92341388 -57175649 + L1Md_A LINE L1 6198 6582 0 6 1289 1180 189 19 9 chr6 92341403 92341617 -57175420 + B3 SINE B2 1 216 0 6 1289 185 0 40 0 chr6 92342119 92342144 -57174893 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1289 267 152 0 0 chr6 92342558 92342604 -57174433 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 6 1289 583 217 48 70 chr6 92342649 92342854 -57174183 - MTEb LTR MaLR -4 375 149 6 1289 372 324 49 0 chr6 92343278 92343380 -57173657 - PB1D10 SINE Alu -10 107 1 6 1289 323 338 51 14 chr6 92343881 92344019 -57173018 + RLTR42-int LTR ERVK 1225 1367 -4155 6 1289 660 246 14 68 chr6 92344527 92344675 -57172362 - B1_Mur1 SINE Alu -8 141 2 6 1289 306 152 119 15 chr6 92344681 92344748 -57172289 - MER20 DNA MER1_type 0 219 146 6 1289 794 279 62 14 chr6 92344979 92345190 -57171847 + MTE2b LTR MaLR 159 379 0 6 1289 295 323 122 12 chr6 92346106 92346239 -57170798 + LTR33 LTR ERVL 47 212 -303 6 1289 297 206 48 0 chr6 92346290 92346353 -57170684 + LTR33 LTR ERVL 443 508 -7 6 1289 419 259 0 0 chr6 92346355 92346457 -57170580 + L2a LINE L2 3273 3425 -1 6 1289 357 259 70 120 chr6 92348151 92348309 -57168728 - MER20 DNA MER1_type -24 195 46 6 1289 982 246 69 23 chr6 92348510 92348772 -57168265 - B4 SINE B4 -18 274 1 6 1289 402 306 151 34 chr6 92349101 92349280 -57167757 - B4A SINE B4 -1 291 92 6 1289 207 370 51 22 chr6 92349447 92349585 -57167452 - MER5A DNA MER1_type -2 187 46 6 1289 659 250 22 0 chr6 92349667 92349803 -57167234 + B4A SINE B4 4 142 -150 6 1289 195 142 9 70 chr6 92349820 92349934 -57167103 + (TGG)n Simple_repeat Simple_repeat 1 107 0 6 1289 669 233 66 13 chr6 92349943 92350095 -57166942 + B4A SINE B4 131 290 -2 6 1289 1091 275 93 20 chr6 92351207 92351552 -57165485 + ORR1D2 LTR MaLR 1 370 0 6 1289 312 340 19 19 chr6 92351608 92351716 -57165321 + MLT1K LTR MaLR 184 291 -304 6 1289 207 283 0 0 chr6 92352393 92352439 -57164598 + polypyrimidine Low_complexity Low_complexity 1 46 0 6 1289 442 122 160 43 chr6 92352461 92352555 -57164482 - B1_Mur3 SINE Alu -5 144 40 6 1289 236 196 27 126 chr6 92352555 92352571 -57164466 - ID_B1 SINE B4 -4 219 121 6 1289 200 200 14 0 chr6 92352577 92352647 -57164390 + (CCTG)n Simple_repeat Simple_repeat 2 72 0 6 1289 282 135 19 37 chr6 92352648 92352702 -57164335 - B1_Mus2 SINE Alu -92 55 3 6 1289 974 227 0 104 chr6 92352977 92353208 -57163829 + MTE2b LTR MaLR 134 340 -39 6 1289 188 256 90 0 chr6 92354166 92354244 -57162793 + L2 LINE L2 2973 3057 -362 6 1289 296 243 262 0 chr6 92354532 92354635 -57162402 - MIR SINE MIR -33 229 100 6 1289 227 259 38 72 chr6 92355370 92355500 -57161537 + MIRc SINE MIR 76 207 -61 6 1289 277 156 65 7 chr6 92356806 92356877 -57160160 + PB1 SINE Alu 1 80 -37 6 1289 365 175 0 0 chr6 92356906 92356969 -57160068 + tRNA-Ala-GCA tRNA tRNA 2 64 -11 6 1289 326 259 0 58 chr6 92356913 92356999 -57160038 + BC1_Mm scRNA scRNA 15 95 -57 6 1289 891 219 94 0 chr6 92357019 92357211 -57159826 + ID_B1 SINE B4 8 217 -7 6 1289 357 24 0 0 chr6 92357212 92357254 -57159783 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 6 1289 2141 219 81 0 chr6 92357512 92357969 -57159068 + MT2A LTR ERVL 1 497 -36 6 1289 443 33 33 0 chr6 92357969 92358029 -57159008 + (TATG)n Simple_repeat Simple_repeat 4 65 0 6 1289 2141 219 81 0 chr6 92358029 92358064 -57158973 + MT2A LTR ERVL 498 532 -1 6 1289 287 172 0 79 chr6 92358106 92358169 -57158868 + MER3 DNA MER1_type 150 207 -2 6 1289 274 232 0 18 chr6 92358128 92358185 -57158852 - MER3 DNA MER1_type -119 90 35 6 1289 424 319 29 115 chr6 92359063 92359410 -57157627 + Lx8 LINE L1 7148 7464 -9 6 1289 21 0 0 0 chr6 92359414 92359435 -57157602 + AT_rich Low_complexity Low_complexity 1 21 0 6 1289 290 290 95 44 chr6 92359437 92359574 -57157463 + MIR SINE MIR 92 235 -27 6 1289 283 314 0 14 chr6 92359693 92359764 -57157273 - RMER30 DNA MER1_type 0 202 133 6 1289 257 329 26 13 chr6 92359695 92359772 -57157265 + Charlie12 DNA MER1_type 2 79 -2794 6 1289 348 288 23 31 chr6 92359943 92360072 -57156965 - Charlie10 DNA MER1_type -2560 262 135 6 1289 352 294 55 16 chr6 92362216 92362344 -57154693 - MIR SINE MIR -94 168 36 6 1289 180 320 59 20 chr6 92362451 92362553 -57154484 + L2a LINE L2 3225 3330 -96 6 1289 1015 309 36 7 chr6 92362691 92363000 -57154037 + MLT1A0 LTR MaLR 15 332 -33 6 1289 574 362 45 40 chr6 92366318 92366672 -57150365 + MLT1K LTR MaLR 233 588 -7 6 1289 296 294 0 0 chr6 92367540 92367608 -57149429 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1289 1107 303 56 49 chr6 92367609 92368839 -57148198 + L1MB7 LINE L1 4844 6101 -83 6 1289 300 53 0 0 chr6 92369538 92369576 -57147461 + (CATG)n Simple_repeat Simple_repeat 1 38 0 6 1289 483 63 0 0 chr6 92369908 92369971 -57147066 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1289 480 106 0 0 chr6 92369971 92370056 -57146981 + (GA)n Simple_repeat Simple_repeat 2 86 0 6 1289 378 297 77 51 chr6 92371851 92372296 -57144741 + L2a LINE L2 2886 3421 -5 6 1289 545 303 98 50 chr6 92373043 92373481 -57143556 - MER113 DNA MER1_type -16 505 47 6 1289 376 273 11 25 chr6 92374184 92374305 -57142732 - ID4 SINE ID -39 113 1 6 1289 821 214 30 54 chr6 92374335 92374503 -57142534 + RSINE1 SINE B4 2 165 0 6 1289 218 156 22 0 chr6 92376491 92376536 -57140501 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1289 518 198 11 0 chr6 92376659 92376750 -57140287 - Lx9 LINE L1 -411 7233 7142 6 1289 862 303 71 78 chr6 92377039 92377333 -57139704 + B4A SINE B4 1 292 0 6 1289 236 307 152 29 chr6 92377215 92377386 -57139651 - RLTR21 LTR ERVK -201 1371 1180 6 1289 441 262 28 0 chr6 92378193 92378300 -57138737 + PB1D7 SINE Alu 1 110 -10 7 1289 2455 198 50 34 chr6 92378792 92379263 -57137774 + MT2A LTR ERVL 3 465 -68 7 1289 401 0 20 0 chr6 92379263 92379312 -57137725 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1289 2455 198 50 34 chr6 92379312 92379363 -57137674 + MT2A LTR ERVL 466 533 0 7 1289 362 0 62 0 chr6 92381022 92381070 -57135967 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 7 1289 239 211 82 27 chr6 92381161 92381234 -57135803 - MER5A1 DNA MER1_type -32 134 58 7 1289 636 298 127 15 chr6 92381701 92381960 -57135077 + B4 SINE B4 1 288 -4 7 1289 192 231 0 0 chr6 92382007 92382059 -57134978 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1289 539 168 28 65 chr6 92382673 92382781 -57134256 + B1_Mur2 SINE Alu 42 145 -4 7 1289 459 0 0 0 chr6 92382786 92382837 -57134200 + (CTA)n Simple_repeat Simple_repeat 3 53 0 7 1289 513 246 45 105 chr6 92384250 92384432 -57132605 + MER20 DNA MER1_type 29 200 -19 7 1289 614 272 75 20 chr6 92384432 92384631 -57132406 + B3 SINE B2 1 210 -6 7 1289 513 246 45 105 chr6 92384631 92384648 -57132389 + MER20 DNA MER1_type 201 216 -3 7 1289 1061 276 11 14 chr6 92384654 92384937 -57132100 + B4A SINE B4 1 282 -10 7 1289 728 262 24 12 chr6 92385464 92385630 -57131407 - B3 SINE B2 -1 215 48 7 1289 828 272 0 58 chr6 92385684 92385875 -57131162 - B3A SINE B2 -4 194 15 7 1289 320 278 112 9 chr6 92386684 92386800 -57130237 - L1MD LINE L1 -2956 3190 3063 7 1289 264 236 55 22 chr6 92386830 92386921 -57130116 + Lx7 LINE L1 7603 7696 0 7 1289 24 32 0 0 chr6 92386957 92386988 -57130049 + AT_rich Low_complexity Low_complexity 1 31 0 7 1289 976 283 61 63 chr6 92387981 92388502 -57128535 - L1M3 LINE L1 -403 5777 5258 7 1289 241 402 28 44 chr6 92388616 92388798 -57128239 - MLT1I LTR MaLR -197 214 36 7 1289 657 329 90 6 chr6 92388880 92389235 -57127802 + MER82 DNA MER2_type 3 387 -266 7 1289 380 315 9 9 chr6 92389351 92389463 -57127574 + MER82 DNA MER2_type 541 652 -1 7 1289 399 254 81 52 chr6 92389966 92390201 -57126836 - L1MB3 LINE L1 -9 6174 5933 7 1289 5066 57 2 5 chr6 92390689 92391320 -57125717 - L1Md_F2 LINE L1 0 6582 5954 7 1289 243 170 0 0 chr6 92391564 92391611 -57125426 + CT-rich Low_complexity Low_complexity 2 48 0 7 1289 926 215 8 2 chr6 92391698 92391886 -57125151 + B3A SINE B2 2 198 -18 7 1289 294 162 0 0 chr6 92391886 92391960 -57125077 + CT-rich Low_complexity Low_complexity 1 74 0 7 1289 3708 74 6 6 chr6 92392040 92392527 -57124510 - L1Md_F2 LINE L1 0 6582 6096 7 1289 357 323 0 0 chr6 92392527 92392620 -57124417 + PB1D10 SINE Alu 18 110 -7 7 1289 405 0 0 0 chr6 92393097 92393142 -57123895 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1289 27 49 0 0 chr6 92393235 92393276 -57123761 + AT_rich Low_complexity Low_complexity 1 41 0 7 1289 321 228 0 80 chr6 92393320 92393420 -57123617 + BC1_Mm scRNA scRNA 16 107 -45 7 1289 423 0 0 0 chr6 92394383 92394430 -57122607 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1289 549 96 0 0 chr6 92394430 92394524 -57122513 + (GA)n Simple_repeat Simple_repeat 1 94 0 7 1289 206 311 0 75 chr6 92395330 92395410 -57121627 - L4 LINE RTE -1251 778 705 7 1289 683 309 56 39 chr6 92395480 92395894 -57121143 - L1ME1 LINE L1 -27 6152 5732 7 1289 222 370 72 0 chr6 92395939 92396077 -57120960 - MIRb SINE MIR -66 202 55 7 1289 325 39 0 38 chr6 92399554 92399607 -57117430 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1289 817 64 7 64 chr6 92399622 92399911 -57117126 + (TG)n Simple_repeat Simple_repeat 1 272 0 7 1289 211 299 40 57 chr6 92400400 92400524 -57116513 + MIRb SINE MIR 38 159 -109 7 1289 575 315 45 30 chr6 92400560 92400825 -57116212 + L1MA4 LINE L1 5662 5930 -370 7 1289 953 266 19 95 chr6 92401010 92401326 -57115711 + B4 SINE B4 1 292 0 7 1289 270 0 0 0 chr6 92403400 92403430 -57113607 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1289 522 278 123 0 chr6 92403440 92403602 -57113435 - B3A SINE B2 -16 182 1 7 1289 1026 234 5 19 chr6 92403911 92404124 -57112913 - B3 SINE B2 -6 210 1 7 1289 508 299 60 0 chr6 92404143 92404310 -57112727 + MER20 DNA MER1_type 4 180 -39 7 1289 854 316 31 23 chr6 92404501 92404854 -57112183 + RLTR17 LTR ERVK 111 466 -226 7 1289 262 191 30 45 chr6 92405007 92405073 -57111964 + RLTR31_Mur LTR ERVK 489 553 0 7 1290 243 300 12 12 chr6 92406818 92406899 -57110138 + ID4 SINE ID 2 82 -1 7 1290 1051 244 40 89 chr6 92406997 92407392 -57109645 + MTE2a LTR MaLR 4 379 0 7 1290 1090 113 209 5 chr6 92407950 92408137 -57108900 - URR1A DNA MER1_type -1 225 1 7 1290 516 16 0 0 chr6 92408893 92408954 -57108083 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1290 347 0 0 23 chr6 92409160 92409204 -57107833 + (TTA)n Simple_repeat Simple_repeat 2 44 0 7 1290 677 230 6 84 chr6 92409422 92409588 -57107449 - B4 SINE B4 -59 233 81 7 1290 1946 270 86 28 chr6 92409915 92410693 -57106344 - L1MB8 LINE L1 -6 6172 5350 7 1290 195 69 0 0 chr6 92411231 92411260 -57105777 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1290 348 24 0 0 chr6 92411352 92411393 -57105644 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1290 360 43 0 0 chr6 92411393 92411438 -57105599 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 1290 180 0 0 0 chr6 92412202 92412222 -57104815 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1290 312 119 0 0 chr6 92413372 92413431 -57103606 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1290 261 0 0 0 chr6 92413431 92413459 -57103578 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1290 25 31 0 0 chr6 92415556 92415588 -57101449 + AT_rich Low_complexity Low_complexity 1 32 0 7 1290 378 256 17 58 chr6 92416173 92416347 -57100690 + GA-rich Low_complexity Low_complexity 2 168 0 7 1290 1138 224 49 105 chr6 92416461 92416585 -57100452 + ORR1D2 LTR MaLR 1 109 -261 7 1290 2443 67 3 0 chr6 92416585 92416897 -57100140 + L1_Mus1 LINE L1 6255 6567 0 7 1290 1138 224 49 105 chr6 92416897 92417162 -57099875 + ORR1D2 LTR MaLR 110 368 -2 7 1290 314 309 11 0 chr6 92418286 92418380 -57098657 - MIRb SINE MIR -77 191 97 7 1290 263 308 179 42 chr6 92419639 92419951 -57097086 + L2a LINE L2 2977 3331 -95 7 1290 616 201 176 6 chr6 92420097 92420175 -57096862 + Lx3C LINE L1 6774 6852 -124 7 1290 243 0 0 0 chr6 92420175 92420202 -57096835 + (TGG)n Simple_repeat Simple_repeat 1 27 0 7 1290 616 201 176 6 chr6 92420202 92420293 -57096744 + Lx3C LINE L1 6853 6970 -6 7 1290 226 333 29 87 chr6 92420907 92421045 -57095992 - Charlie4z DNA MER1_type -1 166 37 7 1290 239 243 135 10 chr6 92421113 92421217 -57095820 + Lx8 LINE L1 7353 7469 -4 7 1290 331 307 40 7 chr6 92421884 92422035 -57095002 - L1MB2 LINE L1 0 6171 6016 7 1290 456 266 9 0 chr6 92422672 92422785 -57094252 - B4A SINE B4 -173 119 6 7 1290 7083 37 10 1 chr6 92423702 92424537 -57092500 - L1_Mus1 LINE L1 0 6567 5726 7 1290 269 278 14 0 chr6 92425577 92425649 -57091388 + Lx7 LINE L1 7241 7313 -383 7 1290 213 39 0 0 chr6 92425656 92425682 -57091355 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 7 1290 252 176 176 0 chr6 92425722 92425796 -57091241 + Lx8 LINE L1 7384 7470 -3 7 1290 36 23 0 0 chr6 92426026 92426069 -57090968 + AT_rich Low_complexity Low_complexity 1 43 0 7 1290 291 248 28 37 chr6 92426078 92426187 -57090850 - Lx9 LINE L1 -62 7582 7475 7 1290 599 281 124 7 chr6 92426226 92426509 -57090528 - Lx9 LINE L1 -130 7514 7199 7 1290 255 273 15 0 chr6 92426825 92426891 -57090146 - ID4_ SINE ID -9 74 8 7 1290 192 184 0 0 chr6 92427078 92427127 -57089910 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1290 620 187 114 0 chr6 92427190 92427313 -57089724 - B1_Mur4 SINE Alu -6 144 8 7 1290 225 254 127 0 chr6 92428213 92428284 -57088753 - ID4 SINE ID -2 81 2 7 1290 778 86 86 0 chr6 92428305 92428444 -57088593 - L1_Mus3 LINE L1 -5 6633 6483 7 1290 217 216 0 0 chr6 92428500 92428537 -57088500 + polypurine Low_complexity Low_complexity 1 37 0 7 1290 396 0 0 0 chr6 92428632 92428676 -57088361 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1290 225 0 0 0 chr6 92431515 92431540 -57085497 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1290 261 0 0 0 chr6 92431639 92431668 -57085369 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1290 430 182 50 0 chr6 92431763 92431922 -57085115 + CT-rich Low_complexity Low_complexity 2 168 0 7 1290 219 36 0 0 chr6 92432378 92432406 -57084631 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1290 183 80 0 0 chr6 92432641 92432666 -57084371 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1290 688 253 16 0 chr6 92432675 92432857 -57084180 - B4 SINE B4 -107 185 1 7 1290 285 131 0 0 chr6 92433260 92433321 -57083716 + (TCTCTG)n Simple_repeat Simple_repeat 2 62 0 7 1290 369 0 0 0 chr6 92433322 92433363 -57083674 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1290 183 211 38 19 chr6 92434307 92434360 -57082677 + MIR SINE MIR 133 186 -76 7 1290 367 333 15 8 chr6 92434784 92434917 -57082120 - Tigger5 DNA MER2_type -2194 212 79 7 1290 21 0 0 0 chr6 92435346 92435367 -57081670 + AT_rich Low_complexity Low_complexity 1 21 0 7 1290 874 134 0 7 chr6 92437515 92437658 -57079379 + B1_Mus1 SINE Alu 1 142 -6 7 1290 26 0 0 0 chr6 92438057 92438083 -57078954 + AT_rich Low_complexity Low_complexity 1 26 0 7 1290 2921 182 16 85 chr6 92438423 92439094 -57077943 - RMER20B LTR ERVK -2 625 1 7 1290 1365 165 153 39 chr6 92439696 92440030 -57077007 + ORR1D1 LTR MaLR 3 374 0 7 1290 229 339 21 84 chr6 92440790 92440932 -57076105 + MER58B DNA MER1_type 208 340 -1 7 1290 212 337 156 22 chr6 92441241 92441411 -57075626 + L2a LINE L2 2999 3195 -231 8 1290 1682 147 72 55 chr6 92441411 92441626 -57075411 + RMER17C LTR ERVK 1 220 -190 8 1290 423 0 0 0 chr6 92441626 92441673 -57075364 + (TC)n Simple_repeat Simple_repeat 1 47 0 8 1290 1682 147 72 55 chr6 92441673 92441860 -57075177 + RMER17C LTR ERVK 221 409 -1 8 1290 517 293 91 44 chr6 92441924 92442285 -57074752 - L1MB8 LINE L1 -12 6166 5789 8 1290 536 288 76 84 chr6 92442524 92442786 -57074251 - B4A SINE B4 0 292 33 8 1290 818 280 90 32 chr6 92443030 92443373 -57073664 - Lx8 LINE L1 -235 7238 6876 8 1290 404 267 131 35 chr6 92443370 92443669 -57073368 + L1_Rod LINE L1 2600 2940 -3206 8 1290 269 155 16 65 chr6 92443690 92443752 -57073285 - L1_Rod LINE L1 -636 5211 5153 8 1290 1117 205 51 20 chr6 92443766 92443899 -57073138 + Lx9 LINE L1 5585 5714 -133 8 1290 186 103 0 0 chr6 92443899 92443928 -57073109 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1290 1117 219 65 27 chr6 92443928 92444131 -57072906 + Lx9 LINE L1 5715 5970 -1674 8 1290 204 182 0 0 chr6 92444136 92444180 -57072857 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1290 325 234 0 168 chr6 92444209 92444471 -57072566 + Lx9 LINE L1 6120 6337 -1307 8 1290 1455 298 38 9 chr6 92444608 92444630 -57072407 + Lx9 LINE L1 6320 6340 -1304 8 1290 195 42 0 0 chr6 92444630 92444654 -57072383 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 8 1290 1455 298 38 9 chr6 92444654 92445078 -57071959 + Lx9 LINE L1 6341 6779 -865 8 1290 604 302 40 19 chr6 92445071 92445434 -57071603 + Lx9 LINE L1 7095 7465 -8 8 1290 302 376 0 0 chr6 92445628 92445769 -57071268 - L1M4b LINE L1 -6228 1106 966 8 1290 563 326 48 66 chr6 92445829 92446118 -57070919 - L1M4b LINE L1 -7047 287 4 8 1290 183 42 0 0 chr6 92448006 92448030 -57069007 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1290 1547 146 17 125 chr6 92448280 92448640 -57068397 - ORR1A4 LTR MaLR -8 321 1 8 1290 247 274 62 86 chr6 92450598 92450726 -57066311 + MER5A DNA MER1_type 38 162 -27 8 1290 228 331 43 121 chr6 92450918 92451011 -57066026 - MER58B DNA MER1_type -48 293 209 8 1290 1100 286 93 20 chr6 92451011 92451364 -57065673 - MTEb LTR MaLR 0 379 1 8 1290 228 331 43 121 chr6 92451364 92451411 -57065626 - MER58B DNA MER1_type -133 208 164 8 1290 24 0 0 0 chr6 92451476 92451500 -57065537 + AT_rich Low_complexity Low_complexity 1 24 0 8 1290 348 24 0 0 chr6 92451532 92451573 -57065464 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1290 517 278 34 14 chr6 92451574 92451720 -57065317 - RSINE1 SINE B4 -15 150 2 8 1290 1201 70 0 0 chr6 92451739 92451895 -57065142 + L1_Mus1 LINE L1 6410 6565 -2 8 1290 1334 243 63 33 chr6 92453174 92453569 -57063468 - MTD LTR MaLR -12 407 1 8 1290 567 0 0 0 chr6 92453756 92453819 -57063218 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1290 216 0 0 0 chr6 92453819 92453842 -57063195 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1290 789 318 4 45 chr6 92453842 92454109 -57062928 - B4 SINE B4 -35 257 2 8 1290 332 302 75 42 chr6 92454827 92454987 -57062050 - MER20 DNA MER1_type -629 154 1 8 1290 1187 169 198 78 chr6 92455378 92455712 -57061325 - ORR1D1 LTR MaLR 0 374 1 8 1290 666 196 29 0 chr6 92455714 92455852 -57061185 - MTD LTR MaLR -277 142 1 8 1290 827 237 134 16 chr6 92458421 92458674 -57058363 + B4 SINE B4 2 284 -8 8 1290 278 330 44 9 chr6 92458703 92458816 -57058221 - MER5A DNA MER1_type -13 176 60 8 1290 791 301 9 88 chr6 92459181 92459498 -57057539 + B4 SINE B4 1 292 0 8 1290 26 0 0 0 chr6 92460197 92460223 -57056814 + AT_rich Low_complexity Low_complexity 1 26 0 8 1290 223 146 0 40 chr6 92460779 92460829 -57056208 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1290 1001 133 200 11 chr6 92461551 92461741 -57055296 + URR1A DNA MER1_type 1 226 0 8 1290 345 47 0 0 chr6 92461755 92461798 -57055239 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1290 218 263 71 31 chr6 92462130 92462228 -57054809 - B4 SINE B4 -151 141 40 8 1290 469 305 61 22 chr6 92462735 92462916 -57054121 - MER20 DNA MER1_type -1 218 31 8 1290 681 321 22 54 chr6 92463759 92463983 -57053054 + B4 SINE B4 3 219 -73 8 1290 192 152 0 0 chr6 92464096 92464129 -57052908 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1290 192 242 97 0 chr6 92464815 92464877 -57052160 - MIRm SINE MIR -6 270 203 8 1290 845 54 0 26 chr6 92465231 92465346 -57051691 - L1Md_F2 LINE L1 -633 5949 5838 8 1290 5172 55 2 6 chr6 92465346 92465989 -57051048 + L1Md_F2 LINE L1 5943 6582 0 8 1290 444 304 63 17 chr6 92466397 92466571 -57050466 - MER58A DNA MER1_type 0 224 43 8 1290 208 384 0 0 chr6 92466722 92466808 -57050229 - MIRb SINE MIR -6 262 177 8 1290 200 269 0 19 chr6 92468200 92468253 -57048784 + L2b LINE L2 3116 3167 -208 8 1290 247 315 130 0 chr6 92468348 92468494 -57048543 + MIR SINE MIR 17 181 -81 8 1290 245 338 0 0 chr6 92469219 92469287 -57047750 - Tigger7 DNA MER2_type -6 2485 2418 8 1290 1945 202 20 8 chr6 92469325 92469503 -57047534 + MTD LTR MaLR 14 193 -226 8 1290 261 0 0 0 chr6 92469503 92469532 -57047505 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1290 1945 202 20 8 chr6 92469532 92469746 -57047291 + MTD LTR MaLR 194 411 -8 8 1290 360 0 0 0 chr6 92469771 92469811 -57047226 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1290 913 246 21 105 chr6 92469812 92470098 -57046939 - B4 SINE B4 -25 267 6 8 1290 670 332 63 14 chr6 92470114 92470401 -57046636 - Tigger7 DNA MER2_type -2190 301 1 8 1290 242 351 31 49 chr6 92470605 92470767 -57046270 + MLT1J LTR MaLR 236 394 -118 8 1290 288 250 44 33 chr6 92470797 92470888 -57046149 + MER58D DNA MER1_type 12 103 -283 8 1290 243 216 159 0 chr6 92470954 92471042 -57045995 + MER58D DNA MER1_type 233 334 -52 8 1290 183 300 0 16 chr6 92471107 92471168 -57045869 + MIRb SINE MIR 208 267 -1 8 1290 393 289 41 34 chr6 92472242 92472389 -57044648 + MLT1A0 LTR MaLR 10 157 -208 8 1290 567 245 14 7 chr6 92472390 92472530 -57044507 + B1F SINE Alu 2 142 -7 8 1290 296 307 0 0 chr6 92472530 92472605 -57044432 + GA-rich Low_complexity Low_complexity 1 75 0 8 1290 227 194 111 16 chr6 92472707 92472770 -57044267 + MLT1A0 LTR MaLR 315 383 -25 8 1290 251 271 14 0 chr6 92472935 92473005 -57044032 - MTE2a LTR MaLR -65 354 284 8 1290 307 347 33 60 chr6 92473049 92473233 -57043804 - MTE2a LTR MaLR -199 180 2 8 1290 180 77 0 0 chr6 92473307 92473333 -57043704 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 8 1290 312 196 101 74 chr6 92473341 92473490 -57043547 - Lx9 LINE L1 -2 7642 7490 8 1290 252 59 0 0 chr6 92473511 92473545 -57043492 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1290 816 250 27 32 chr6 92473580 92473799 -57043238 - Lx9 LINE L1 -1043 6601 6263 8 1290 585 0 0 0 chr6 92473869 92473934 -57043103 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 8 1290 322 252 239 20 chr6 92473934 92474181 -57042856 + L1ME3A LINE L1 5761 6061 -112 8 1290 287 284 56 11 chr6 92474245 92474334 -57042703 + MTE2b LTR MaLR 6 98 -281 8 1290 818 302 20 56 chr6 92474316 92474618 -57042419 + MTE2b LTR MaLR 42 332 -47 8 1290 673 276 104 107 chr6 92474671 92474951 -57042086 + B4 SINE B4 14 292 0 8 1290 542 298 39 61 chr6 92475154 92475586 -57041451 + MLT1D LTR MaLR 1 467 0 8 1290 302 258 0 0 chr6 92475871 92475937 -57041100 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 8 1290 980 151 118 0 chr6 92476095 92476281 -57040756 - B3 SINE B2 -7 209 2 8 1290 22 0 0 0 chr6 92477103 92477125 -57039912 + AT_rich Low_complexity Low_complexity 1 22 0 8 1290 371 338 7 7 chr6 92477826 92477966 -57039071 - L1ME2z LINE L1 -294 6150 6011 8 1290 280 369 107 67 chr6 92478191 92478406 -57038631 + MER2 DNA MER2_type 2 219 -126 8 1290 1074 170 124 5 chr6 92478406 92478607 -57038430 + URR1A DNA MER1_type 1 225 -1 8 1290 280 369 107 67 chr6 92478607 92478719 -57038318 + MER2 DNA MER2_type 220 342 -3 8 1290 213 191 0 45 chr6 92478723 92478767 -57038270 - L2 LINE L2 -1032 2387 2346 8 1290 214 275 97 21 chr6 92479056 92479149 -57037888 - MIRb SINE MIR -93 175 76 8 1290 953 149 0 12 chr6 92480747 92480917 -57036120 + B2_Mm2 SINE B2 2 169 -26 8 1290 818 109 36 0 chr6 92481235 92481373 -57035664 - URR1A DNA MER1_type 0 226 84 8 1290 264 254 16 0 chr6 92482209 92482272 -57034765 + PB1D10 SINE Alu 28 91 -26 8 1290 418 91 40 24 chr6 92482569 92482693 -57034344 + (CA)n Simple_repeat Simple_repeat 2 127 0 8 1290 625 108 42 6 chr6 92482718 92482886 -57034151 + (CA)n Simple_repeat Simple_repeat 1 174 0 8 1290 369 0 0 0 chr6 92483899 92483940 -57033097 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1290 21 36 0 0 chr6 92484254 92484282 -57032755 + AT_rich Low_complexity Low_complexity 1 28 0 8 1290 184 261 0 44 chr6 92485536 92485604 -57031433 - L2c LINE L2 -46 3341 3277 8 1290 279 157 0 0 chr6 92485856 92485907 -57031130 + (TA)n Simple_repeat Simple_repeat 2 52 0 8 1290 580 310 15 39 chr6 92486158 92486363 -57030674 + RMER30 DNA MER1_type 2 201 -1 8 1290 1091 232 64 128 chr6 92486527 92486932 -57030105 + MTE2b LTR MaLR 1 379 0 8 1290 261 345 76 18 chr6 92487988 92488159 -57028878 + MIRb SINE MIR 51 231 -37 8 1290 456 233 73 22 chr6 92489101 92489237 -57027800 + MER117 DNA MER1_type 4 146 -51 8 1290 328 88 35 0 chr6 92489587 92489644 -57027393 + (GA)n Simple_repeat Simple_repeat 2 60 0 8 1290 257 278 125 0 chr6 92490447 92490519 -57026518 + RSINE1 SINE B4 2 82 -83 8 1290 264 329 0 0 chr6 92490527 92490597 -57026440 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1290 365 311 86 43 chr6 92490817 92491049 -57025988 + L1ME1 LINE L1 5837 6078 -101 8 1290 288 0 0 0 chr6 92491223 92491255 -57025782 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 8 1290 1067 121 0 0 chr6 92491255 92491412 -57025625 - B2_Mm2 SINE B2 -38 157 1 8 1290 366 23 0 0 chr6 92492680 92492723 -57024314 + (TC)n Simple_repeat Simple_repeat 2 44 0 8 1290 333 0 0 0 chr6 92492723 92492759 -57024278 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1290 237 337 0 11 chr6 92493071 92493158 -57023879 + GA-rich Low_complexity Low_complexity 3 88 0 8 1290 210 37 0 0 chr6 92493470 92493497 -57023540 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 8 1290 823 168 15 0 chr6 92493497 92493634 -57023403 - B1_Mur3 SINE Alu -7 142 4 8 1290 297 326 29 39 chr6 92494713 92494815 -57022222 + MIRb SINE MIR 96 196 -72 8 1290 366 315 27 20 chr6 92495460 92495609 -57021428 + MLT1H2 LTR MaLR 41 190 -299 8 1290 282 227 97 60 chr6 92495623 92495778 -57021259 + MLT1H2 LTR MaLR 327 549 0 8 1290 428 326 54 40 chr6 92495792 92496016 -57021021 - MIR SINE MIR -35 227 1 8 1290 547 288 67 67 chr6 92496059 92496342 -57020695 + B4 SINE B4 2 284 -8 9 1290 370 211 50 84 chr6 92498332 92498451 -57018586 + PB1D10 SINE Alu 1 115 -2 9 1290 319 271 94 0 chr6 92498534 92498630 -57018407 - MER5A1 DNA MER1_type -42 124 20 9 1290 279 41 40 20 chr6 92498747 92498797 -57018240 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1290 263 289 24 12 chr6 92501255 92501339 -57015698 + CT-rich Low_complexity Low_complexity 3 87 0 1 1290 1518 163 53 35 chr6 92502001 92502319 -57014718 + ORR1A4 LTR MaLR 6 329 0 2 1290 1444 197 55 11 chr6 92502393 92502738 -57014299 - MTD LTR MaLR -30 391 26 3 1290 378 184 0 0 chr6 92503018 92503094 -57013943 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1290 200 35 35 0 chr6 92503104 92503133 -57013904 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 1290 464 138 197 49 chr6 92503586 92503708 -57013329 - URR1A DNA MER1_type -43 183 44 6 1290 862 253 25 20 chr6 92504658 92504856 -57012181 - B4 SINE B4 0 292 94 7 1290 201 39 0 0 chr6 92504970 92504996 -57012041 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1290 3447 269 94 30 chr6 92505012 92506188 -57010849 - Lx9 LINE L1 -203 7441 6190 9 1290 1260 206 128 17 chr6 92506370 92506694 -57010343 + Lx9 LINE L1 5505 5898 -1746 1 1290 435 183 12 0 chr6 92506710 92506792 -57010245 - B4 SINE B4 -208 84 2 7 1290 240 200 0 0 chr6 92507072 92507122 -57009915 + (CAT)n Simple_repeat Simple_repeat 2 51 0 1 1290 839 312 32 29 chr6 92508255 92508532 -57008505 - B4A SINE B4 -1 291 14 1 1290 235 182 65 113 chr6 92508566 92508628 -57008409 - ID4_ SINE ID 0 83 25 1 1290 361 230 31 8 chr6 92508707 92508800 -57008237 + PB1D10 SINE Alu 6 99 -21 1 1290 637 160 0 0 chr6 92508847 92508953 -57008084 + RMER1B Other Other 946 1051 -15 1 1290 620 218 93 77 chr6 92509337 92509531 -57007506 + B3A SINE B2 2 198 0 1 1290 4091 11 0 0 chr6 92509552 92510004 -57007033 + L1Md_T LINE L1 6131 6582 0 1 1290 495 364 127 41 chr6 92510889 92511702 -57005335 + L1M4 LINE L1 335 1217 -5325 1 1290 333 0 0 0 chr6 92512949 92512986 -57004051 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1290 2249 185 116 19 chr6 92513372 92513957 -57003080 - RLTR26 LTR ERVK 0 642 1 2 1290 641 215 17 39 chr6 92514247 92514426 -57002611 + L1MB7 LINE L1 5108 5282 -864 2 1290 311 148 175 19 chr6 92515998 92516101 -57000936 + L1MB7 LINE L1 5270 5388 -790 2 1290 954 287 96 40 chr6 92516255 92516923 -57000114 + L1MB7 LINE L1 5460 6164 -20 2 1290 226 323 87 52 chr6 92518360 92518589 -56998448 + LTR82A LTR ERVL 1 237 -635 2 1290 679 349 31 25 chr6 92518948 92519307 -56997730 + LTR82A LTR ERVL 246 606 -266 2 1290 197 342 64 26 chr6 92519311 92519467 -56997570 + MER5B DNA MER1_type 4 165 -13 2 1290 655 274 117 8 chr6 92519487 92519726 -56997311 + LTR82A LTR ERVL 608 872 0 2 1290 426 275 93 7 chr6 92520573 92520723 -56996314 + MLT1B LTR MaLR 14 176 -214 2 1290 937 273 12 24 chr6 92520774 92521029 -56996008 + B4 SINE B4 41 292 0 2 1290 382 295 75 30 chr6 92521056 92521255 -56995782 + MLT1B LTR MaLR 181 388 -2 2 1290 237 333 0 0 chr6 92522143 92522203 -56994834 + (CTG)n Simple_repeat Simple_repeat 2 61 0 2 1290 246 193 0 0 chr6 92522203 92522260 -56994777 + (CCA)n Simple_repeat Simple_repeat 2 58 0 2 1290 237 254 0 17 chr6 92522565 92522625 -56994412 + ID4 SINE ID 13 71 -12 2 1290 195 250 0 0 chr6 92522628 92522696 -56994341 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1290 276 326 113 11 chr6 92523274 92523451 -56993586 + MIR SINE MIR 26 220 -42 3 1290 457 204 0 100 chr6 92523936 92524056 -56992981 - MTEa LTR MaLR -271 108 1 3 1290 734 259 91 65 chr6 92524348 92524692 -56992345 - MTEa LTR MaLR -13 366 1 3 1290 672 247 184 0 chr6 92525745 92526012 -56991025 + L1MB4 LINE L1 5580 5895 -285 3 1290 631 321 91 11 chr6 92526025 92526290 -56990747 + B4A SINE B4 3 288 -4 3 1290 241 344 39 13 chr6 92526317 92526473 -56990564 + MLT1H LTR MaLR 138 297 -252 3 1290 782 211 26 26 chr6 92526501 92526635 -56990402 - RLTR25A LTR ERVK 0 1103 967 3 1290 953 81 7 0 chr6 92526635 92526771 -56990266 + (TCTCCC)n Simple_repeat Simple_repeat 3 139 0 3 1290 204 40 0 0 chr6 92526771 92526796 -56990241 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1290 3966 144 86 32 chr6 92526796 92527510 -56989527 - RLTR25A LTR ERVK -137 966 137 3 1290 396 0 0 0 chr6 92527510 92527554 -56989483 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1290 3966 143 86 32 chr6 92527554 92527679 -56989358 - RLTR25A LTR ERVK -967 136 2 3 1290 435 320 64 64 chr6 92528133 92528400 -56988637 + B4 SINE B4 3 269 -23 4 1290 245 129 14 41 chr6 92528980 92529053 -56987984 + (CATA)n Simple_repeat Simple_repeat 2 72 0 4 1290 658 303 22 22 chr6 92530315 92530497 -56986540 + B3A SINE B2 1 182 -16 4 1290 351 313 128 80 chr6 92530586 92530874 -56986163 - ORR1E LTR MaLR -2 357 56 4 1290 228 67 0 0 chr6 92531259 92531289 -56985748 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1290 417 20 0 0 chr6 92531289 92531338 -56985699 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1290 180 222 0 0 chr6 92531358 92531430 -56985607 + GA-rich Low_complexity Low_complexity 1 72 0 4 1290 461 344 47 21 chr6 92531766 92532001 -56985036 - MLT1E2 LTR MaLR 0 627 387 4 1290 251 363 11 56 chr6 92532647 92532825 -56984212 - L2 LINE L2 -620 2799 2630 4 1290 27 0 0 0 chr6 92534442 92534469 -56982568 + AT_rich Low_complexity Low_complexity 1 27 0 4 1290 2919 245 40 13 chr6 92534593 92535295 -56981742 - Lx7 LINE L1 -276 7420 6700 5 1290 2739 186 93 9 chr6 92535305 92535333 -56981704 + L1_Mur3 LINE L1 4597 4625 -1255 5 1290 420 20 0 0 chr6 92535333 92535382 -56981655 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1290 264 30 0 0 chr6 92535383 92535416 -56981621 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 5 1290 2739 186 93 9 chr6 92535416 92535964 -56981073 + L1_Mur3 LINE L1 4626 5224 -656 5 161 1186 227 60 47 chr6 92536756 92537121 -56979916 - ORR1D2 LTR MaLR 0 370 1 5 1291 585 291 34 0 chr6 92537204 92537215 -56979822 + ID SINE ID 1 11 -213 5 1291 2279 148 76 10 chr6 92537215 92537610 -56979427 - MTC LTR MaLR 0 421 1 5 1291 585 291 34 0 chr6 92537610 92537746 -56979291 + ID_B1 SINE B4 12 152 -72 5 1291 1112 88 0 13 chr6 92537749 92537898 -56979139 + B1_Mus1 SINE Alu 2 148 0 5 1291 260 37 18 53 chr6 92537898 92537955 -56979082 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 5 1291 262 315 0 0 chr6 92537956 92538029 -56979008 + ID_B1 SINE B4 143 215 -9 5 1291 2246 102 12 21 chr6 92538136 92538465 -56978572 - ORR1A3 LTR MaLR 0 326 1 5 1291 1331 292 138 16 chr6 92538565 92539380 -56977657 + L1MB7 LINE L1 5262 6176 -3 6 1291 690 13 0 0 chr6 92539385 92539464 -56977573 + (GA)n Simple_repeat Simple_repeat 2 80 0 6 1291 277 245 76 102 chr6 92540044 92540162 -56976875 + MLT2D LTR ERVL 446 560 0 6 1291 190 135 0 26 chr6 92540322 92540360 -56976677 - MIRc SINE MIR -158 110 74 6 1291 2813 62 80 16 chr6 92540482 92540858 -56976179 - MTB LTR MaLR 0 400 1 6 1291 340 241 124 0 chr6 92541708 92541853 -56975184 + LTR48 LTR ERV1 578 740 -47 6 1291 622 300 47 64 chr6 92542127 92542423 -56974614 + B4A SINE B4 1 291 -1 6 1291 252 100 0 0 chr6 92542461 92542501 -56974536 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 6 1291 222 343 44 32 chr6 92542691 92542867 -56974170 + MIRc SINE MIR 22 192 -70 6 1291 1005 122 180 0 chr6 92542966 92543155 -56973882 - URR1B DNA MER1_type -2 223 1 6 1291 291 288 42 26 chr6 92544272 92544415 -56972622 - L2a LINE L2 -4 3422 3227 7 1291 800 294 52 59 chr6 92544569 92544610 -56972427 + B4A SINE B4 2 41 -251 7 1291 2149 106 12 64 chr6 92544610 92544954 -56972083 - ORR1A2 LTR MaLR -1 326 1 7 1291 800 294 52 59 chr6 92544954 92545201 -56971836 + B4A SINE B4 42 288 -4 7 1291 503 144 0 32 chr6 92545834 92545927 -56971110 - B1_Mur3 SINE Alu 0 149 60 7 1291 381 289 0 0 chr6 92545970 92546046 -56970991 + PB1D7 SINE Alu 24 99 -21 7 1291 708 45 0 0 chr6 92546080 92546168 -56970869 + (GGA)n Simple_repeat Simple_repeat 1 88 0 7 1291 817 183 0 0 chr6 92547420 92547551 -56969486 - B1_Mur2 SINE Alu -18 131 1 7 1291 477 0 0 0 chr6 92548343 92548396 -56968641 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 1291 615 27 0 0 chr6 92548396 92548468 -56968569 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1291 4901 68 0 12 chr6 92548738 92549381 -56967656 - L1Md_F2 LINE L1 0 6582 5948 7 1291 254 176 0 38 chr6 92549381 92549418 -56967619 - ORR1E LTR MaLR -11 368 333 8 1291 327 105 0 0 chr6 92549418 92549475 -56967562 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 8 1291 254 176 0 38 chr6 92549475 92549490 -56967547 - ORR1E LTR MaLR -47 332 318 8 1291 549 246 53 12 chr6 92549553 92549722 -56967315 - ORR1E LTR MaLR -183 176 1 8 1291 262 340 78 23 chr6 92550126 92550343 -56966694 + Charlie7 DNA MER1_type 388 616 -1996 8 1291 2451 294 67 12 chr6 92550393 92551337 -56965700 + Tigger6a DNA MER2_type 88 1083 0 8 1291 1022 209 5 0 chr6 92551446 92551642 -56965395 + B3 SINE B2 14 210 -6 8 1291 304 176 132 0 chr6 92551659 92551727 -56965310 + Lx6 LINE L1 6699 6775 -685 8 1291 1153 75 0 7 chr6 92551730 92551877 -56965160 + B1_Mm SINE Alu 2 147 0 8 1291 415 182 13 41 chr6 92551887 92551985 -56965052 + Lx6 LINE L1 6740 6849 -847 8 1291 843 241 28 63 chr6 92551988 92552272 -56964765 + Lx6 LINE L1 7125 7398 -62 8 1291 386 304 15 7 chr6 92552664 92552800 -56964237 - MTD LTR MaLR -282 137 1 8 1291 246 273 125 0 chr6 92553050 92553138 -56963899 + L1MB7 LINE L1 6076 6174 -10 8 1291 278 254 201 14 chr6 92553999 92554143 -56962894 + RMER5 LTR ERV1 44 214 -320 8 1291 210 191 0 0 chr6 92554150 92554192 -56962845 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 9 1291 351 0 0 0 chr6 92554194 92554233 -56962804 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1291 1243 162 20 5 chr6 92554237 92554436 -56962601 - B3 SINE B2 -13 203 2 9 1291 780 210 39 15 chr6 92554487 92554690 -56962347 + RMER5 LTR ERV1 325 532 -2 8 1291 23 0 0 0 chr6 92555909 92555932 -56961105 + AT_rich Low_complexity Low_complexity 1 23 0 9 1291 910 188 167 0 chr6 92556764 92556956 -56960081 - URR1B DNA MER1_type -1 224 1 9 1291 305 292 123 0 chr6 92556994 92557100 -56959937 - MER58A DNA MER1_type -56 168 50 9 1291 491 295 201 16 chr6 92557114 92557358 -56959679 + B4 SINE B4 1 289 -3 9 1291 429 20 0 0 chr6 92557365 92557415 -56959622 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1291 367 282 0 0 chr6 92557799 92557884 -56959153 - PB1D7 SINE Alu -12 108 24 9 1291 244 340 101 25 chr6 92560766 92561052 -56955985 - L4 LINE RTE 0 2029 1722 9 1291 21 0 0 0 chr6 92561845 92561866 -56955171 + AT_rich Low_complexity Low_complexity 1 21 0 1 1291 312 111 0 0 chr6 92562121 92562175 -56954862 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1291 477 0 0 0 chr6 92562175 92562228 -56954809 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1291 205 281 0 0 chr6 92562753 92562817 -56954220 - L3b LINE CR1 -195 287 224 1 1291 359 256 113 0 chr6 92563111 92563277 -56953760 - MTD LTR MaLR -14 365 196 1 1291 27 0 0 0 chr6 92563277 92563304 -56953733 + AT_rich Low_complexity Low_complexity 1 27 0 1 1291 7682 72 8 1 chr6 92563313 92564387 -56952650 - L1Md_F2 LINE L1 -1 6581 5498 1 1291 451 227 93 0 chr6 92564387 92564484 -56952553 - MTD LTR MaLR -206 213 108 1 1291 1132 52 0 7 chr6 92564485 92564639 -56952398 + B2_Mm2 SINE B2 24 176 -19 1 1291 293 252 164 10 chr6 92564633 92564737 -56952300 - MTD LTR MaLR -299 120 1 1 1291 249 294 46 23 chr6 92564918 92565005 -56952032 + MER20 DNA MER1_type 3 91 -128 1 1291 316 261 130 10 chr6 92565380 92565480 -56951557 + PB1D10 SINE Alu 6 116 -1 1 1291 188 250 171 24 chr6 92565572 92565654 -56951383 + MIR SINE MIR 52 145 -63 1 1291 198 0 0 0 chr6 92566876 92566898 -56950139 + (TA)n Simple_repeat Simple_repeat 1 22 0 1 1291 185 283 289 9 chr6 92567102 92567216 -56949821 - MIRc SINE MIR -54 214 69 1 1291 339 297 0 18 chr6 92567271 92567384 -56949653 - MER58B DNA MER1_type -3 338 228 1 1291 186 103 0 0 chr6 92567390 92567419 -56949618 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 1 1291 246 279 35 16 chr6 92567773 92567873 -56949164 - MIR SINE MIR -84 184 76 1 1291 330 258 86 0 chr6 92568581 92568674 -56948363 - MIRc SINE MIR -144 124 24 1 1291 1536 183 133 9 chr6 92568916 92569247 -56947790 - ORR1D1 LTR MaLR -2 372 1 1 1291 2465 86 3 6 chr6 92569605 92569934 -56947103 + ORR1A4 LTR MaLR 1 328 -1 1 1291 576 312 94 50 chr6 92571322 92571810 -56945227 - L1MA4A LINE L1 -363 5937 5423 1 1291 189 0 0 0 chr6 92571810 92571831 -56945206 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1291 257 286 11 11 chr6 92571838 92571930 -56945107 - RSINE1 SINE B4 0 165 74 1 1291 239 182 0 167 chr6 92571992 92572058 -56944979 - B1F2 SINE Alu -85 64 10 1 1291 906 237 19 23 chr6 92572058 92572274 -56944763 + B3 SINE B2 2 216 0 1 1291 252 296 147 9 chr6 92572764 92572873 -56944164 - B3A SINE B2 -35 163 40 1 1291 23 0 0 0 chr6 92573191 92573214 -56943823 + AT_rich Low_complexity Low_complexity 1 23 0 1 1291 657 235 0 90 chr6 92573404 92573582 -56943455 + RSINE1 SINE B4 4 165 0 1 1291 432 82 0 0 chr6 92573600 92573661 -56943376 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1291 21 0 0 0 chr6 92573814 92573835 -56943202 + AT_rich Low_complexity Low_complexity 1 21 0 1 1291 195 69 0 0 chr6 92574089 92574118 -56942919 + (C)n Simple_repeat Simple_repeat 1 29 0 1 1291 1254 43 0 0 chr6 92575332 92575493 -56941544 + (TCCC)n Simple_repeat Simple_repeat 4 164 0 1 1291 1533 281 72 25 chr6 92575497 92576033 -56941004 - Lx6 LINE L1 -60 7400 6479 1 1291 415 292 9 0 chr6 92576030 92576136 -56940901 - Lx6 LINE L1 -687 6363 6257 1 1291 183 289 69 46 chr6 92576489 92576576 -56940461 + MIR SINE MIR 159 247 -15 1 1291 461 325 0 7 chr6 92577136 92577288 -56939749 - RSINE1 SINE B4 -10 155 5 1 1291 204 40 0 0 chr6 92577320 92577345 -56939692 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 1 1291 420 333 97 15 chr6 92577890 92578085 -56938952 + B4A SINE B4 34 244 -48 1 1291 982 262 78 99 chr6 92578088 92578473 -56938564 + MTE2a LTR MaLR 1 377 -2 1 1291 246 81 0 0 chr6 92578774 92578811 -56938226 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1291 1758 245 95 32 chr6 92578817 92579374 -56937663 - Lx9 LINE L1 -169 7475 6884 1 1291 375 80 0 0 chr6 92579467 92579517 -56937520 - L1_Mus1 LINE L1 -448 6119 6070 1 1291 3691 63 7 2 chr6 92579517 92580012 -56937025 + L1_Mus1 LINE L1 6093 6567 0 1 1291 748 224 41 0 chr6 92580127 92580274 -56936763 + B3A SINE B2 9 161 -37 1 1291 252 86 0 0 chr6 92580284 92580319 -56936718 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1 1291 421 313 98 45 chr6 92580682 92581191 -56935846 + L1MC4a LINE L1 7155 7690 -192 1 1291 346 265 88 7 chr6 92581207 92581344 -56935693 + L1MC4a LINE L1 7720 7867 -15 1 1291 658 336 57 4 chr6 92581771 92582001 -56935036 - B4A SINE B4 -22 270 29 1 1291 181 135 39 0 chr6 92582005 92582057 -56934980 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1291 3305 50 5 2 chr6 92582720 92583119 -56933918 + MTB LTR MaLR 1 400 0 1 1291 195 42 0 0 chr6 92583986 92584010 -56933027 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 1 1291 244 303 0 0 chr6 92585171 92585237 -56931800 - 7SK RNA RNA -87 244 179 1 1291 749 270 47 14 chr6 92585333 92585547 -56931490 + ID_B1 SINE B4 4 224 0 1 1291 637 274 42 42 chr6 92586055 92586318 -56930719 + L1MB7 LINE L1 5922 6184 0 1 1291 492 280 96 60 chr6 92586657 92587022 -56930015 + L1MB8 LINE L1 5673 6050 -128 1 1291 300 258 51 10 chr6 92587487 92587585 -56929452 + MLT1A1 LTR MaLR 307 408 0 1 1291 213 327 36 9 chr6 92587869 92587980 -56929057 - L2a LINE L2 -10 3416 3303 1 1291 1007 232 5 5 chr6 92588215 92588423 -56928614 + B3 SINE B2 5 212 -4 1 1291 461 218 306 0 chr6 92588555 92588748 -56928289 + L1MA7 LINE L1 4133 4384 -1759 1 1291 1235 271 110 62 chr6 92588750 92590070 -56926967 + L1MA7 LINE L1 4630 6008 -283 1 1291 413 273 84 44 chr6 92590077 92590280 -56926757 + L1MA4A LINE L1 5953 6163 -140 1 1291 412 337 63 26 chr6 92590289 92590478 -56926559 + B4A SINE B4 91 286 -6 1 1291 620 210 17 11 chr6 92590555 92590733 -56926304 + GA-rich Low_complexity Low_complexity 2 180 0 1 1291 721 113 9 0 chr6 92591376 92591491 -56925546 - URR1B DNA MER1_type 0 225 110 1 1291 338 203 90 45 chr6 92591377 92591511 -56925526 + CYRA11_Mm Unknown Y-chromosome 172 311 -306 1 1291 291 71 0 0 chr6 92592328 92592370 -56924667 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1291 284 321 74 49 chr6 92593531 92593734 -56923303 - MIRb SINE MIR -1 267 60 1 1291 883 269 99 8 chr6 92593815 92594077 -56922960 + B4 SINE B4 1 286 -6 1 1291 216 0 0 0 chr6 92594296 92594320 -56922717 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1 1291 297 300 78 20 chr6 92594353 92594506 -56922531 - L1_Rod LINE L1 -681 5166 5005 1 1291 522 319 0 14 chr6 92594563 92594709 -56922328 + ID_B1 SINE B4 81 224 0 1 1291 429 319 94 34 chr6 92594945 92595211 -56921826 + MLT1A0 LTR MaLR 23 304 -61 1 1291 275 240 47 47 chr6 92595252 92595379 -56921658 - LTR48 LTR ERV1 -50 737 611 1 1291 4090 75 0 17 chr6 92595479 92596021 -56921016 + L1_Mus1 LINE L1 6034 6566 -1 1 1291 697 257 120 129 chr6 92596290 92597044 -56919993 + L1_Rod LINE L1 4671 5419 -745 1 1291 1013 191 52 0 chr6 92597355 92597565 -56919472 - URR1A DNA MER1_type -5 221 1 1 1291 813 289 59 19 chr6 92597888 92598159 -56918878 + Lx7 LINE L1 7039 7320 -376 1 1291 269 224 0 56 chr6 92598169 92598259 -56918778 + T-rich Low_complexity Low_complexity 1 85 0 1 1291 277 322 0 11 chr6 92599345 92599458 -56917579 + GA-rich Low_complexity Low_complexity 1 111 0 1 1291 375 41 0 0 chr6 92599702 92599751 -56917286 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1291 297 0 0 0 chr6 92599751 92599783 -56917254 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1291 791 214 118 63 chr6 92599783 92600037 -56917000 - B4A SINE B4 -23 269 2 1 1291 1894 108 15 74 chr6 92600152 92600491 -56916546 + ORR1A4 LTR MaLR 1 319 -10 1 1291 341 214 11 33 chr6 92600548 92600640 -56916397 - PB1D9 SINE Alu -2 118 29 1 1291 350 269 37 9 chr6 92600628 92600737 -56916300 + B4 SINE B4 17 128 -164 1 1291 1824 283 132 8 chr6 92601591 92602196 -56914841 + Lx8 LINE L1 6639 7318 -155 1 1291 1456 239 66 13 chr6 92602218 92602595 -56914442 - MTD LTR MaLR -15 404 8 1 1291 21 0 0 0 chr6 92602607 92602628 -56914409 + AT_rich Low_complexity Low_complexity 1 21 0 1 1291 6369 25 1 0 chr6 92602638 92603366 -56913671 + L1Md_F3 LINE L1 5842 6570 -14 1 1291 21 36 0 0 chr6 92603443 92603471 -56913566 + AT_rich Low_complexity Low_complexity 1 28 0 1 1291 822 238 111 0 chr6 92603475 92603664 -56913373 + B3 SINE B2 2 211 -5 1 1291 947 151 169 15 chr6 92604151 92604346 -56912691 - URR1B DNA MER1_type 0 225 1 1 1291 571 281 32 38 chr6 92604666 92604851 -56912186 + B3A SINE B2 3 186 -12 1 1291 22 35 0 0 chr6 92604851 92604880 -56912157 + AT_rich Low_complexity Low_complexity 1 29 0 1 1291 2193 287 111 40 chr6 92604891 92605700 -56911337 + Lx9 LINE L1 6613 7481 -163 1 1291 243 0 0 0 chr6 92605700 92605727 -56911310 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1291 2193 287 111 40 chr6 92605727 92605860 -56911177 + Lx9 LINE L1 7482 7621 -23 1 1291 850 295 102 0 chr6 92606589 92606894 -56910143 + MTE2b LTR MaLR 39 374 -5 1 1291 2162 198 108 63 chr6 92607010 92607566 -56909471 - Lx5 LINE L1 -9 7041 6461 1 1291 5807 139 12 11 chr6 92607565 92608586 -56908451 + Lx5 LINE L1 5483 6511 -539 1 1291 459 0 0 0 chr6 92608744 92608795 -56908242 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1291 204 40 0 0 chr6 92609290 92609315 -56907722 + (CAG)n Simple_repeat Simple_repeat 2 26 0 1 1291 736 150 56 44 chr6 92611123 92611283 -56905754 + ORR1D1 LTR MaLR 213 374 0 1 1291 252 59 0 0 chr6 92611306 92611340 -56905697 - ORR1D1 LTR MaLR -340 34 1 1 1291 234 0 0 0 chr6 92612283 92612309 -56904728 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1291 560 230 17 68 chr6 92612918 92613095 -56903942 - MLT2B4 LTR ERVL -386 170 3 1 1291 396 278 52 13 chr6 92613480 92613633 -56903404 + L2 LINE L2 2214 2372 -1047 1 1291 387 0 0 0 chr6 92613722 92613765 -56903272 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1291 968 291 68 14 chr6 92613880 92614232 -56902805 - MTD LTR MaLR -14 405 35 2 1291 398 88 0 0 chr6 92614463 92614520 -56902517 - RMER17C LTR ERVK -353 57 1 2 1291 679 260 49 44 chr6 92614525 92614730 -56902307 + B4 SINE B4 35 240 -52 2 1291 389 329 21 14 chr6 92616140 92616282 -56900755 - RSINE1 SINE B4 -15 150 8 2 1291 646 138 139 47 chr6 92616520 92616649 -56900388 - B1_Mur3 SINE Alu -8 141 1 2 1291 256 200 107 0 chr6 92616670 92616745 -56900292 + MIRb SINE MIR 97 179 -89 2 1291 196 262 125 45 chr6 92616901 92617013 -56900024 + MIRc SINE MIR 39 159 -109 2 1291 283 358 16 0 chr6 92618404 92618527 -56898510 - MER2B DNA MER2_type -10 326 202 2 1291 436 274 65 70 chr6 92618527 92618727 -56898310 - RMER30 DNA MER1_type -1 201 3 2 1291 261 316 61 79 chr6 92621027 92621192 -56895845 + L2 LINE L2 2793 2954 -465 2 1291 279 383 36 70 chr6 92621600 92621661 -56895376 + MamRep137 DNA TcMar? 9 70 -374 2 1291 486 253 175 16 chr6 92621661 92621850 -56895187 + MER20 DNA MER1_type 1 219 0 2 1291 279 383 36 70 chr6 92621850 92622038 -56894999 + MamRep137 DNA TcMar? 71 250 -194 2 1291 4623 96 74 13 chr6 92622038 92622742 -56894295 + Lx LINE L1 5905 6651 -3 2 1291 279 383 36 70 chr6 92622742 92622850 -56894187 + MamRep137 DNA TcMar? 251 355 -89 2 1291 246 307 99 52 chr6 92622984 92623156 -56893881 + ORR1E LTR MaLR 75 254 -105 2 1291 279 250 39 125 chr6 92623340 92623468 -56893569 + PB1D9 SINE Alu 4 120 0 2 1291 207 0 0 0 chr6 92623468 92623491 -56893546 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1291 419 232 9 18 chr6 92623741 92623855 -56893182 + Lx9 LINE L1 7524 7636 -8 2 1291 231 36 0 0 chr6 92623860 92623888 -56893149 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1291 414 0 0 0 chr6 92623930 92623976 -56893061 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1291 263 134 90 0 chr6 92625679 92625746 -56891291 - MIR SINE MIR -26 236 164 2 1291 814 281 31 54 chr6 92626121 92626415 -56890622 - B4 SINE B4 -5 287 1 2 1291 202 289 67 0 chr6 92627161 92627251 -56889786 - MIR SINE MIR -43 219 124 2 1291 279 0 0 0 chr6 92627849 92627880 -56889157 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1291 417 153 0 0 chr6 92628020 92628092 -56888945 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 1291 445 273 85 18 chr6 92628325 92628489 -56888548 - Charlie4a DNA MER1_type -288 220 46 2 1291 207 65 30 75 chr6 92628957 92629024 -56888013 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 2 1291 41 36 0 0 chr6 92629776 92629831 -56887206 + AT_rich Low_complexity Low_complexity 1 55 0 2 1291 1620 191 16 0 chr6 92630405 92630522 -56886515 - MTD LTR MaLR -100 319 203 2 1291 267 104 0 0 chr6 92630522 92630570 -56886467 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1291 1620 191 16 0 chr6 92630570 92630755 -56886282 - MTD LTR MaLR -217 202 13 2 1291 195 69 0 0 chr6 92630755 92630784 -56886253 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1291 1445 276 107 61 chr6 92630815 92631589 -56885448 - MTD-int LTR MaLR -1 1097 288 2 1291 236 273 63 25 chr6 92633187 92633266 -56883771 - MIRm SINE MIR -122 154 73 2 1291 191 265 181 0 chr6 92633996 92634079 -56882958 - MIRm SINE MIR -23 253 156 2 1291 1639 160 104 15 chr6 92634164 92634501 -56882536 - ORR1B1 LTR MaLR -27 367 1 2 1291 431 324 54 16 chr6 92634597 92634782 -56882255 + L1M5 LINE L1 5504 5695 -545 2 1291 217 121 0 79 chr6 92635176 92635239 -56881798 + (GTTTG)n Simple_repeat Simple_repeat 5 62 0 2 1291 455 244 150 0 chr6 92635249 92635376 -56881661 - B1_Mur1 SINE Alu -1 148 3 2 1291 217 0 61 0 chr6 92635392 92635425 -56881612 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1291 1147 71 0 0 chr6 92635425 92635565 -56881472 - B1_Mus1 SINE Alu -8 140 1 2 1291 241 222 19 0 chr6 92636096 92636150 -56880887 + L1M5 LINE L1 5602 5656 -468 2 1291 357 186 0 0 chr6 92636426 92636496 -56880541 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1291 2961 49 5 3 chr6 92636737 92637127 -56879910 - MTA_Mm LTR MaLR 0 396 6 2 1291 640 240 126 0 chr6 92637127 92637302 -56879735 - B3 SINE B2 -18 198 2 2 1291 189 213 0 0 chr6 92637984 92638031 -56879006 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1291 25 51 0 0 chr6 92638153 92638192 -56878845 + AT_rich Low_complexity Low_complexity 1 39 0 2 1291 682 258 26 99 chr6 92638265 92638497 -56878540 + B3 SINE B2 2 216 0 2 1291 799 345 76 30 chr6 92638646 92639041 -56877996 - MLT1J LTR MaLR -5 507 95 2 1291 201 74 0 0 chr6 92639205 92639232 -56877805 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1291 636 48 0 0 chr6 92640024 92640108 -56876929 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 2 1291 201 147 0 0 chr6 92641705 92641739 -56875298 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 2 1291 261 0 0 0 chr6 92641823 92641852 -56875185 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1291 447 87 0 0 chr6 92641924 92641993 -56875044 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1291 382 217 48 0 chr6 92642380 92642463 -56874574 + PB1D10 SINE Alu 2 88 -29 2 1291 189 107 0 0 chr6 92642920 92642948 -56874089 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1291 959 231 10 0 chr6 92643210 92643413 -56873624 + B3 SINE B2 1 205 -11 2 1291 614 297 111 35 chr6 92643552 92643922 -56873115 + MLT1C LTR MaLR 69 466 -1 2 1291 393 256 65 82 chr6 92644171 92644488 -56872549 - MTEb LTR MaLR -5 374 3 2 1291 446 0 19 0 chr6 92645260 92645314 -56871723 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1291 288 285 97 49 chr6 92645441 92645454 -56871583 - B4A SINE B4 -140 152 140 2 1291 354 74 0 0 chr6 92645454 92645508 -56871529 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 2 1291 288 285 97 49 chr6 92645508 92645638 -56871399 - B4A SINE B4 -153 139 2 2 1291 785 281 25 25 chr6 92647538 92647782 -56869255 + B4 SINE B4 43 286 -6 2 1291 23 0 0 0 chr6 92648446 92648469 -56868568 + AT_rich Low_complexity Low_complexity 1 23 0 2 1291 341 256 49 8 chr6 92648903 92649025 -56868012 - MER58B DNA MER1_type -128 213 87 2 1291 396 0 0 0 chr6 92649092 92649136 -56867901 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1291 441 0 0 0 chr6 92649384 92649433 -56867604 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1291 492 289 49 83 chr6 92650095 92650420 -56866617 - MER58B DNA MER1_type -1 340 27 2 1291 388 327 26 0 chr6 92650455 92650611 -56866426 + MER5A1 DNA MER1_type 3 162 -4 2 1291 239 291 17 76 chr6 92652078 92652197 -56864840 + L2a LINE L2 3065 3176 -250 2 1291 196 276 87 48 chr6 92652330 92652433 -56864604 - MIRb SINE MIR -148 120 14 2 1291 656 281 132 7 chr6 92652636 92652916 -56864121 + MTEa LTR MaLR 1 315 -64 2 1291 1075 279 74 10 chr6 92652905 92653296 -56863741 - BGLII_B LTR ERVK -21 420 5 2 1291 266 176 162 0 chr6 92653303 92653371 -56863666 + MTEa LTR MaLR 286 364 -15 2 1291 471 78 0 0 chr6 92656678 92656742 -56860295 + (CAGA)n Simple_repeat Simple_repeat 1 64 0 2 1291 554 204 88 0 chr6 92656760 92656873 -56860164 - B1_Mur1 SINE Alu -17 132 10 2 1291 243 0 0 0 chr6 92656900 92656927 -56860110 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1291 815 281 4 85 chr6 92657723 92657951 -56859086 + B4 SINE B4 2 213 -79 2 1291 189 0 0 0 chr6 92657951 92657972 -56859065 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2 1291 815 281 4 85 chr6 92657972 92658003 -56859034 + B4 SINE B4 214 240 -52 2 1291 890 252 53 45 chr6 92658147 92658413 -56858624 + Lx8 LINE L1 7043 7310 -163 2 1291 252 0 0 0 chr6 92658520 92658548 -56858489 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1291 238 122 39 39 chr6 92659018 92659069 -56857968 + RMER15 LTR ERVL 10 60 -515 2 1291 1618 177 48 12 chr6 92659171 92659502 -56857535 + RMER15 LTR ERVL 233 575 0 2 1291 216 97 0 0 chr6 92660090 92660121 -56856916 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1291 195 42 0 0 chr6 92660656 92660680 -56856357 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1291 421 173 39 0 chr6 92660688 92660815 -56856222 + (TA)n Simple_repeat Simple_repeat 1 132 0 2 1291 250 222 0 0 chr6 92661465 92661519 -56855518 + MTEb LTR MaLR 1 54 -325 2 1291 1286 220 52 9 chr6 92661568 92661894 -56855143 + MTEb LTR MaLR 38 377 -2 2 1291 27 81 0 0 chr6 92662074 92662136 -56854901 + AT_rich Low_complexity Low_complexity 1 62 0 2 1291 22 35 0 0 chr6 92662283 92662312 -56854725 + AT_rich Low_complexity Low_complexity 1 29 0 2 1291 411 178 39 32 chr6 92663071 92663174 -56853863 + B3A SINE B2 1 100 -95 2 1291 297 0 0 0 chr6 92663174 92663207 -56853830 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1291 368 253 139 40 chr6 92663207 92663276 -56853761 + B2_Mm2 SINE B2 101 190 -5 2 1291 216 0 0 0 chr6 92663509 92663533 -56853504 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1291 230 345 11 45 chr6 92663543 92663631 -56853406 + MER5B DNA MER1_type 62 146 -32 2 1291 443 301 138 59 chr6 92663963 92664252 -56852785 - ORR1E LTR MaLR -41 318 7 2 1291 1805 165 175 6 chr6 92664364 92664724 -56852313 - MTC LTR MaLR 0 421 1 2 1291 528 249 41 29 chr6 92665953 92666123 -56850914 + MER5B DNA MER1_type 1 172 -6 2 1291 327 25 0 0 chr6 92666585 92666625 -56850412 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1291 773 173 0 15 chr6 92666636 92666771 -56850266 - B1_Mur2 SINE Alu -6 143 11 2 1291 366 200 54 108 chr6 92666657 92666786 -56850251 - MT2B LTR ERVL -323 278 157 2 1291 198 242 88 29 chr6 92666817 92666885 -56850152 - MIRb SINE MIR -96 172 101 2 161 424 252 252 0 chr6 92667792 92667951 -56849086 - MER3 DNA MER1_type -6 203 5 2 1292 198 0 0 0 chr6 92668198 92668220 -56848817 + (CCA)n Simple_repeat Simple_repeat 3 24 0 2 1292 264 338 60 13 chr6 92668730 92668880 -56848157 + MT2A LTR ERVL 6 162 -392 2 1292 303 307 22 54 chr6 92669030 92669259 -56847778 + MT2A LTR ERVL 333 560 -7 2 1292 185 312 116 20 chr6 92669359 92669506 -56847531 - MIRb SINE MIR -43 225 65 2 1292 781 245 36 0 chr6 92670530 92670722 -56846315 + MTD LTR MaLR 221 419 0 3 1292 256 301 152 88 chr6 92671345 92671549 -56845488 - B4 SINE B4 0 292 76 3 1292 1709 162 89 14 chr6 92671550 92671900 -56845137 + ORR1C2 LTR MaLR 1 376 -8 3 1292 263 273 38 25 chr6 92671902 92671981 -56845056 - RSINE1 SINE B4 -83 82 3 3 1292 353 186 43 0 chr6 92672733 92672797 -56844240 + MLT1C LTR MaLR 1 67 -400 3 1292 603 298 17 12 chr6 92672797 92672970 -56844067 + ORR1E LTR MaLR 1 174 -185 3 1292 295 181 83 0 chr6 92672974 92673046 -56843991 + MLT1C LTR MaLR 114 191 -199 3 1292 670 255 60 5 chr6 92673204 92673405 -56843632 - MTD LTR MaLR 0 419 208 3 1292 28 0 0 0 chr6 92673410 92673438 -56843599 + AT_rich Low_complexity Low_complexity 1 28 0 3 1292 225 0 0 0 chr6 92673533 92673558 -56843479 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1292 695 243 8 127 chr6 92673600 92673845 -56843192 - B3 SINE B2 0 216 1 3 1292 667 230 15 0 chr6 92674110 92674245 -56842792 + B1_Mur1 SINE Alu 2 138 -11 3 1292 357 62 0 0 chr6 92674264 92674312 -56842725 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1292 4024 221 49 36 chr6 92675057 92676080 -56840957 - Lx9 LINE L1 -29 7615 6580 3 1292 240 111 0 0 chr6 92676093 92676138 -56840899 + (T)n Simple_repeat Simple_repeat 1 45 0 3 1292 283 255 85 26 chr6 92676703 92676856 -56840181 + L2c LINE L2 3176 3337 -50 3 1292 180 0 0 0 chr6 92678033 92678053 -56838984 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 3 1292 333 0 0 0 chr6 92678054 92678091 -56838946 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1292 1321 213 32 0 chr6 92679027 92679309 -56837728 + B4A SINE B4 1 291 -1 3 1292 232 25 24 48 chr6 92680712 92680754 -56836283 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 1292 224 287 83 42 chr6 92681396 92681516 -56835521 - MIRb SINE MIR -27 241 117 3 1292 408 55 0 0 chr6 92681756 92681811 -56835226 + (A)n Simple_repeat Simple_repeat 1 55 0 3 1292 239 316 0 50 chr6 92682072 92682192 -56834845 + MIR SINE MIR 75 188 -74 3 1292 2071 217 116 59 chr6 92682213 92682876 -56834161 + L1_Rod LINE L1 2787 3485 -2362 3 1292 207 0 0 0 chr6 92682876 92682899 -56834138 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1292 2071 217 116 59 chr6 92682899 92682995 -56834042 + L1_Rod LINE L1 3486 3589 -2258 3 1292 1049 227 115 19 chr6 92682973 92683356 -56833681 + L1_Rod LINE L1 5176 5545 -302 3 1292 264 30 0 0 chr6 92683393 92683426 -56833611 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1292 384 300 0 10 chr6 92683454 92683555 -56833482 + Lx9 LINE L1 7063 7162 -482 3 1292 395 119 15 0 chr6 92683557 92683624 -56833413 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1292 4346 131 69 1 chr6 92683624 92684375 -56832662 - RLTR25A LTR ERVK -271 832 31 3 1292 22 0 0 0 chr6 92684382 92684404 -56832633 + AT_rich Low_complexity Low_complexity 1 22 0 3 1292 3568 67 5 0 chr6 92684585 92685019 -56832018 + RLTR10C LTR ERVK 1 436 0 3 1292 2542 30 10 7 chr6 92685028 92685325 -56831712 - L1Md_F3 LINE L1 -156 6428 6131 3 1292 1034 14 0 48 chr6 92685325 92685470 -56831567 + L1Md_F3 LINE L1 6447 6584 0 3 1292 298 264 92 28 chr6 92687705 92687814 -56829223 + PB1D10 SINE Alu 1 116 -1 3 1292 453 302 114 23 chr6 92688572 92688748 -56828289 - B4A SINE B4 -90 202 11 3 1292 189 0 0 0 chr6 92688953 92688974 -56828063 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1292 231 114 0 0 chr6 92689103 92689138 -56827899 + (GGA)n Simple_repeat Simple_repeat 3 37 0 3 1292 2211 127 9 3 chr6 92691259 92691608 -56825429 - ORR1B2 LTR MaLR -16 351 1 3 1292 324 0 0 0 chr6 92692655 92692691 -56824346 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1292 354 312 45 13 chr6 92693095 92693251 -56823786 - MER3 DNA MER1_type 0 209 49 3 1292 237 242 129 21 chr6 92693337 92693430 -56823607 - MIRc SINE MIR -122 146 44 3 1292 273 284 196 0 chr6 92694494 92694596 -56822441 - MER5A DNA MER1_type -54 135 14 3 1292 330 253 0 31 chr6 92694613 92694710 -56822327 + ID4 SINE ID 4 97 -55 3 1292 772 20 20 0 chr6 92695472 92695574 -56821463 + (CAA)n Simple_repeat Simple_repeat 1 104 0 3 1292 562 354 36 8 chr6 92695863 92696111 -56820926 - MER2 DNA MER2_type -90 255 1 3 1292 240 111 0 0 chr6 92696232 92696277 -56820760 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1292 337 318 49 38 chr6 92696352 92696535 -56820502 - MLT1J2 LTR MaLR -200 248 64 3 1292 1203 55 0 0 chr6 92696948 92697093 -56819944 - B1_Mus1 SINE Alu -2 146 2 3 1292 37 52 0 0 chr6 92697229 92697287 -56819750 + AT_rich Low_complexity Low_complexity 1 58 0 3 1292 313 286 47 19 chr6 92697305 92697412 -56819625 - MIRb SINE MIR -61 207 98 3 1292 304 277 26 114 chr6 92697540 92697575 -56819462 - PB1D10 SINE Alu -1 116 13 3 1292 309 266 89 0 chr6 92697575 92697654 -56819383 - ID_B1 SINE B4 -45 179 94 3 1292 634 299 19 25 chr6 92698300 92698458 -56818579 + RSINE1 SINE B4 9 165 0 3 1292 219 69 0 0 chr6 92698467 92698496 -56818541 + (CCA)n Simple_repeat Simple_repeat 1 29 0 3 1292 1148 54 0 26 chr6 92698543 92698694 -56818343 + B1_Mus1 SINE Alu 2 148 0 3 1292 231 36 0 0 chr6 92698988 92699016 -56818021 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1292 655 108 18 0 chr6 92699016 92699127 -56817910 + (GA)n Simple_repeat Simple_repeat 2 114 0 3 1292 735 278 74 60 chr6 92699176 92699459 -56817578 - B4 SINE B4 0 292 6 3 1292 180 323 0 0 chr6 92699492 92699554 -56817483 + L4 LINE RTE 1968 2029 0 3 1292 283 287 23 82 chr6 92699694 92699865 -56817172 - MER20 DNA MER1_type -58 161 1 3 1292 239 104 21 0 chr6 92700025 92700073 -56816964 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 3 1292 315 324 42 21 chr6 92701975 92702117 -56814920 + MLT1E2 LTR MaLR 18 162 -465 3 1292 232 27 54 0 chr6 92703386 92703423 -56813614 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1292 396 0 0 0 chr6 92703861 92703905 -56813132 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1292 833 61 1 17 chr6 92704135 92704253 -56812784 + L1Md_A LINE L1 5471 5589 -297 3 1292 9053 11 0 0 chr6 92704253 92705249 -56811788 + L1Md_A LINE L1 5587 6582 0 3 1292 297 183 211 15 chr6 92705380 92705476 -56811561 - B1_Mus2 SINE Alu 0 149 43 3 1292 591 235 54 12 chr6 92706232 92706414 -56810623 + Lx7 LINE L1 5691 5879 -1594 3 1292 411 21 0 0 chr6 92706414 92706462 -56810575 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1292 407 291 107 22 chr6 92706462 92706504 -56810533 + Lx7 LINE L1 5880 5933 -1540 3 1292 642 272 199 50 chr6 92707037 92707489 -56809548 + RMER5 LTR ERV1 1 519 -15 3 1292 547 141 0 11 chr6 92708121 92708214 -56808823 + B1_Mur4 SINE Alu 59 150 0 3 1292 366 80 0 0 chr6 92708214 92708264 -56808773 + (GAAAA)n Simple_repeat Simple_repeat 4 53 0 3 1292 900 202 59 151 chr6 92708789 92709093 -56807944 - B4 SINE B4 -14 278 3 3 1292 1911 180 84 42 chr6 92709413 92709888 -56807149 - RLTR20B3 LTR ERVK -82 495 1 3 1292 219 69 0 0 chr6 92710192 92710221 -56806816 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1292 501 151 0 0 chr6 92710221 92710340 -56806697 + GA-rich Low_complexity Low_complexity 1 119 0 3 1292 336 297 118 53 chr6 92710352 92710624 -56806413 + MLT1E1A LTR MaLR 214 628 -52 3 1292 246 214 18 0 chr6 92711049 92711105 -56805932 - Lx8 LINE L1 -386 7087 7031 3 1292 563 310 23 17 chr6 92711499 92711673 -56805364 - B4 SINE B4 -113 179 5 3 1292 1597 266 33 50 chr6 92713642 92714161 -56802876 + RMER5 LTR ERV1 14 523 -11 3 1292 378 0 0 0 chr6 92714191 92714233 -56802804 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1292 654 230 297 67 chr6 92714603 92715064 -56801973 - RMER21B LTR ERV1 -275 567 1 3 1292 776 228 71 22 chr6 92715081 92715305 -56801732 - MLT2D LTR ERVL -179 235 1 3 1292 988 204 239 9 chr6 92715316 92715643 -56801394 + MTD LTR MaLR 1 402 -17 3 1292 1261 53 6 6 chr6 92715665 92715836 -56801201 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 3 1292 738 273 133 34 chr6 92715848 92716201 -56800836 - MTD LTR MaLR -31 388 1 3 1292 525 298 99 96 chr6 92716201 92716535 -56800502 + MLT1A0 LTR MaLR 2 336 -29 3 1292 746 220 0 19 chr6 92717564 92717735 -56799302 - Lx8 LINE L1 -980 6480 6317 3 1292 234 0 0 0 chr6 92717787 92717813 -56799224 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 3 1292 846 280 27 9 chr6 92718018 92718238 -56798799 + Lx8 LINE L1 6462 6685 -788 3 1292 1294 244 133 40 chr6 92718274 92718794 -56798243 - RLTR20D LTR ERVK 0 568 1 3 1292 707 266 111 80 chr6 92718794 92719181 -56797856 - RLTR23 LTR ERV1 -24 406 8 3 1292 1742 269 40 2 chr6 92719242 92719666 -56797371 + Lx8 LINE L1 6712 7151 -322 3 1292 553 256 23 0 chr6 92719660 92719832 -56797205 - L1_Mur3 LINE L1 -3150 2730 2555 3 1292 277 75 38 0 chr6 92719894 92719947 -56797090 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1292 364 286 29 0 chr6 92719948 92720053 -56796984 + Lx8 LINE L1 7215 7322 -151 3 1292 425 267 9 122 chr6 92720065 92720174 -56796863 + Lx9 LINE L1 5023 5106 -741 3 1292 1092 69 28 0 chr6 92720174 92720318 -56796719 - B1_Mus1 SINE Alu 0 148 1 3 1292 425 239 145 29 chr6 92720318 92720456 -56796581 + Lx9 LINE L1 5107 5321 -819 3 1292 523 221 73 37 chr6 92720462 92720598 -56796439 + B1_Mur2 SINE Alu 2 142 -7 3 1292 1354 250 110 47 chr6 92720599 92721427 -56795610 + Lx9 LINE L1 5289 6246 -1398 3 1292 4194 185 173 12 chr6 92721497 92722538 -56794499 + Lx9 LINE L1 6426 7633 -11 3 1292 233 202 53 11 chr6 92722539 92722634 -56794403 + (TA)n Simple_repeat Simple_repeat 2 100 0 3 1292 296 127 18 0 chr6 92724369 92724424 -56792613 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 1292 450 136 0 0 chr6 92724413 92724494 -56792543 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1292 1005 84 18 0 chr6 92724700 92724867 -56792170 + (TCTA)n Simple_repeat Simple_repeat 1 170 0 3 1292 361 250 12 0 chr6 92724886 92724966 -56792071 + ID4_ SINE ID 2 82 -1 3 1292 357 136 48 10 chr6 92725359 92725463 -56791574 + (TG)n Simple_repeat Simple_repeat 1 108 0 3 1292 292 269 30 0 chr6 92725528 92725595 -56791442 - ID4 SINE ID -9 74 6 4 1292 954 221 14 14 chr6 92725749 92725956 -56791081 - B3 SINE B2 -8 208 2 4 1292 352 269 9 96 chr6 92726212 92726327 -56790710 + PB1D10 SINE Alu 7 111 -6 4 1292 374 278 51 29 chr6 92726561 92726698 -56790339 - MER5A1 DNA MER1_type -23 143 4 4 1292 247 379 23 0 chr6 92726772 92726904 -56790133 + MIRb SINE MIR 91 225 -43 4 1292 203 222 40 20 chr6 92726955 92727056 -56789981 + (TA)n Simple_repeat Simple_repeat 2 104 0 4 1292 254 276 26 13 chr6 92727596 92727673 -56789364 + Cheshire DNA MER1_type 1 78 -2342 4 1292 260 204 250 31 chr6 92727676 92727772 -56789265 - PB1D10 SINE Alu 0 117 1 4 1292 1134 314 118 34 chr6 92727876 92728149 -56788888 + Cheshire DNA MER1_type 80 405 -2015 4 1292 876 234 129 65 chr6 92728149 92728505 -56788532 + MTEa LTR MaLR 1 379 0 4 1292 1134 314 118 34 chr6 92728505 92728929 -56788108 + Cheshire DNA MER1_type 406 834 -1586 4 1292 462 270 29 52 chr6 92729077 92729279 -56787758 - MTEa LTR MaLR -2 377 162 4 1292 411 260 101 27 chr6 92729403 92729614 -56787423 + RMER20B LTR ERVK 133 356 -271 4 1292 615 67 0 0 chr6 92729652 92729741 -56787296 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1292 184 114 22 43 chr6 92729898 92729944 -56787093 + GA-rich Low_complexity Low_complexity 3 47 0 4 1292 634 262 80 42 chr6 92730268 92730507 -56786530 + Cheshire DNA MER1_type 1672 1919 -501 4 1292 313 253 208 27 chr6 92730524 92730696 -56786341 + B3A SINE B2 1 191 -25 4 1292 676 300 91 12 chr6 92730688 92731019 -56786018 + Cheshire DNA MER1_type 1922 2278 -142 4 1292 533 246 53 73 chr6 92731055 92731261 -56785776 - B3 SINE B2 -13 203 2 4 1292 234 0 0 0 chr6 92731899 92731925 -56785112 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 1292 896 50 0 0 chr6 92731925 92732045 -56784992 - B1_Mus2 SINE Alu -1 146 27 4 1292 1193 68 0 0 chr6 92733078 92733225 -56783812 + B1_Mus1 SINE Alu 2 148 0 4 1292 258 156 0 0 chr6 92734877 92734922 -56782115 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1292 387 0 0 0 chr6 92735095 92735138 -56781899 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 1292 262 234 31 0 chr6 92735631 92735695 -56781342 + MER53 DNA hAT 3 68 -125 4 1292 385 257 20 0 chr6 92735737 92735838 -56781199 - PB1D10 SINE Alu -12 105 3 4 1292 213 39 0 0 chr6 92737361 92737387 -56779650 + (C)n Simple_repeat Simple_repeat 1 26 0 4 1292 321 26 0 0 chr6 92737883 92737921 -56779116 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1292 201 74 0 0 chr6 92737953 92737980 -56779057 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1292 1147 51 0 0 chr6 92737980 92738117 -56778920 - B1_Mm SINE Alu -9 138 2 4 1292 351 312 9 0 chr6 92738211 92738323 -56778714 + PB1D7 SINE Alu 5 117 -3 4 1292 2740 45 47 3 chr6 92738609 92738947 -56778090 - L1Md_F2 LINE L1 0 6582 6230 4 1292 1179 117 0 0 chr6 92739283 92739463 -56777574 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1292 189 74 0 0 chr6 92739806 92739833 -56777204 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4 1292 438 245 9 19 chr6 92739923 92740031 -56777006 - PB1D10 SINE Alu -8 109 3 4 1292 423 0 0 0 chr6 92740303 92740350 -56776687 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1292 21 0 0 0 chr6 92740793 92740814 -56776223 + AT_rich Low_complexity Low_complexity 1 21 0 4 1292 236 250 0 0 chr6 92742420 92742464 -56774573 + ID4_ SINE ID 35 78 -5 4 1292 375 23 0 0 chr6 92742464 92742508 -56774529 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1292 468 0 0 0 chr6 92742508 92742559 -56774478 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1292 289 308 44 37 chr6 92742827 92742962 -56774075 - B1F SINE Alu -4 145 10 4 1292 356 327 87 12 chr6 92743002 92743163 -56773874 + MER63A DNA AcHobo 37 209 -1 4 1292 346 172 11 33 chr6 92743658 92743748 -56773289 + GA-rich Low_complexity Low_complexity 5 92 0 4 1292 256 228 0 17 chr6 92744613 92744671 -56772366 - RMER15 LTR ERVL -108 467 411 4 1292 259 270 67 0 chr6 92744671 92744760 -56772277 - Lx8 LINE L1 -206 7267 7173 4 1292 207 0 0 0 chr6 92744875 92744898 -56772139 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1292 432 0 0 0 chr6 92745193 92745241 -56771796 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1292 206 139 28 0 chr6 92745463 92745499 -56771538 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1292 1218 48 7 0 chr6 92745502 92745648 -56771389 - B1_Mm SINE Alu 0 147 1 4 1292 836 285 35 8 chr6 92746574 92746832 -56770205 + B4A SINE B4 8 272 -20 4 1292 201 226 16 16 chr6 92747205 92747268 -56769769 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 1292 272 280 79 3 chr6 92747304 92747413 -56769624 - MIR SINE MIR -63 205 87 4 1292 3875 282 88 49 chr6 92748676 92749740 -56767297 + Lx8 LINE L1 3639 4783 -1097 4 1292 1166 102 209 0 chr6 92749740 92749927 -56767110 - URR1A DNA MER1_type 0 226 1 4 1292 3875 282 88 49 chr6 92749927 92750460 -56766577 + Lx8 LINE L1 4784 5326 -554 4 1292 859 159 22 0 chr6 92750460 92750598 -56766439 + B1_Mm SINE Alu 5 145 -2 4 1292 3875 282 88 49 chr6 92750598 92751027 -56766010 + Lx8 LINE L1 5327 5744 -136 4 1292 1301 118 16 0 chr6 92751054 92751240 -56765797 - B2_Mm2 SINE B2 -5 190 2 4 1292 589 276 30 70 chr6 92751241 92751440 -56765597 + B3A SINE B2 8 198 0 4 1292 854 333 112 65 chr6 92751447 92752236 -56764801 + Lx8 LINE L1 5738 6563 -910 4 1292 1475 260 71 18 chr6 92752267 92752717 -56764320 + Lx8 LINE L1 6777 7250 -223 4 1292 232 281 0 0 chr6 92752722 92752779 -56764258 + RMER15 LTR ERVL 401 457 -118 4 1292 258 95 0 0 chr6 92752785 92752827 -56764210 + (CACG)n Simple_repeat Simple_repeat 1 42 0 4 1292 795 297 0 5 chr6 92754320 92754540 -56762497 + B4 SINE B4 1 219 -73 4 1292 205 176 0 0 chr6 92755107 92755141 -56761896 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1292 928 297 43 8 chr6 92755163 92755421 -56761616 - B4A SINE B4 -18 274 8 4 1292 360 287 0 10 chr6 92755564 92755666 -56761371 - MER20 DNA MER1_type -95 124 24 4 1292 427 309 61 72 chr6 92756478 92756771 -56760266 - B4 SINE B4 -2 290 1 4 1292 399 252 15 37 chr6 92757564 92757700 -56759337 + GA-rich Low_complexity Low_complexity 3 135 0 4 1292 894 160 7 14 chr6 92757708 92757854 -56759183 + B1_Mus2 SINE Alu 3 147 0 4 1292 635 206 11 11 chr6 92757858 92758035 -56759002 + GA-rich Low_complexity Low_complexity 2 178 0 4 1292 306 140 0 0 chr6 92758037 92758087 -56758950 + (GGAGA)n Simple_repeat Simple_repeat 5 54 0 4 1292 2369 155 34 26 chr6 92758721 92759139 -56757898 - MTC LTR MaLR 0 421 1 4 1292 419 274 32 92 chr6 92759285 92759470 -56757567 + B4A SINE B4 2 175 -117 4 1292 1168 293 77 16 chr6 92759652 92760145 -56756892 - L1MB5 LINE L1 -37 6137 5615 4 1292 355 273 91 0 chr6 92762282 92762381 -56754656 - PB1D9 SINE Alu -5 115 8 4 1292 180 0 0 0 chr6 92762531 92762551 -56754486 + (CAA)n Simple_repeat Simple_repeat 1 20 0 4 1292 205 270 177 18 chr6 92763045 92763158 -56753879 - MIRm SINE MIR 0 276 146 4 1292 266 284 193 28 chr6 92764431 92764453 -56752584 - B4 SINE B4 -49 243 157 4 1292 628 171 0 0 chr6 92764453 92764558 -56752479 - PB1D9 SINE Alu -9 111 7 4 1292 266 284 193 28 chr6 92764558 92764576 -56752461 - B4 SINE B4 -49 156 75 4 1292 330 285 56 16 chr6 92765001 92765126 -56751911 - MIRb SINE MIR -81 187 58 4 1292 799 286 60 11 chr6 92768360 92768625 -56748412 - B4A SINE B4 -14 278 1 4 1292 30 83 0 0 chr6 92769492 92769564 -56747473 + AT_rich Low_complexity Low_complexity 1 72 0 4 1292 402 303 60 18 chr6 92769632 92769800 -56747237 - MER20 DNA MER1_type -36 183 9 4 1292 306 67 0 0 chr6 92770827 92770872 -56746165 + (T)n Simple_repeat Simple_repeat 1 45 0 4 1292 243 0 0 0 chr6 92771388 92771415 -56745622 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1292 420 335 96 18 chr6 92772710 92772990 -56744047 + ORR1D2 LTR MaLR 58 359 -11 4 1292 283 287 63 94 chr6 92775117 92775244 -56741793 - L2b LINE L2 -1 3374 3252 4 1292 288 0 0 0 chr6 92775632 92775664 -56741373 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1292 1231 34 7 0 chr6 92775665 92775811 -56741226 - B1_Mus2 SINE Alu 0 147 1 4 1292 1230 134 119 0 chr6 92775815 92776017 -56741020 + URR1A DNA MER1_type 1 226 0 4 1292 191 325 62 0 chr6 92776092 92776172 -56740865 - L2b LINE L2 -808 2611 2527 4 1292 331 310 51 23 chr6 92779181 92779356 -56737681 - MIRb SINE MIR -28 240 61 4 1292 207 0 0 0 chr6 92780510 92780533 -56736504 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1292 819 29 0 0 chr6 92780533 92780636 -56736401 - B1_Mus1 SINE Alu -8 140 38 4 1292 601 330 16 87 chr6 92782082 92782223 -56734814 + B4A SINE B4 2 139 -153 4 1292 5708 82 3 3 chr6 92782223 92782970 -56734067 + L1Md_F2 LINE L1 5824 6570 -12 4 1292 601 330 16 87 chr6 92782970 92783137 -56733900 + B4A SINE B4 140 288 -4 4 1292 360 0 0 0 chr6 92783168 92783208 -56733829 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1292 472 281 75 12 chr6 92783685 92783858 -56733179 + MER2 DNA MER2_type 6 189 -156 4 1292 416 358 93 35 chr6 92784573 92785144 -56731893 + L2 LINE L2 2432 3035 -384 4 1292 570 71 0 0 chr6 92785409 92785493 -56731544 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 1292 246 299 0 123 chr6 92785884 92785902 -56731135 + MT2B LTR ERVL 151 153 -448 4 1292 598 202 8 88 chr6 92785902 92786027 -56731010 + B1F1 SINE Alu 1 115 -2 4 1292 288 186 0 0 chr6 92786037 92786096 -56730941 + GA-rich Low_complexity Low_complexity 2 60 0 4 1292 240 184 0 0 chr6 92786397 92786446 -56730591 + GA-rich Low_complexity Low_complexity 3 51 0 4 1292 274 305 62 21 chr6 92787234 92787378 -56729659 + MIRb SINE MIR 104 253 -15 4 1292 333 47 0 0 chr6 92787621 92787664 -56729373 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 4 1292 599 323 30 30 chr6 92787664 92787865 -56729172 - ID_B1 SINE B4 -11 213 13 4 1292 324 203 0 14 chr6 92788193 92788263 -56728774 - RMER30 DNA MER1_type -25 177 109 4 1292 291 28 0 0 chr6 92788270 92788306 -56728731 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1292 471 63 0 0 chr6 92788306 92788369 -56728668 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1292 821 211 19 81 chr6 92788386 92788597 -56728440 - B3A SINE B2 0 198 1 5 1292 360 292 36 7 chr6 92789288 92789417 -56727620 + MER20 DNA MER1_type 42 168 -615 5 1292 296 351 42 69 chr6 92790092 92790309 -56726728 - MER20 DNA MER1_type -7 212 2 5 1292 198 167 0 0 chr6 92791629 92791665 -56725372 + (CG)n Simple_repeat Simple_repeat 2 37 0 5 1292 226 307 16 73 chr6 92792680 92792803 -56724234 - PB1 SINE Alu -7 120 5 5 1292 221 287 90 56 chr6 92792803 92792824 -56724213 - ID_B1 SINE B4 -8 216 68 5 1292 29 78 0 0 chr6 92793411 92793475 -56723562 + AT_rich Low_complexity Low_complexity 1 64 0 5 1292 253 328 0 0 chr6 92793677 92793767 -56723270 + L2a LINE L2 3275 3415 -11 5 1292 256 217 13 17 chr6 92794315 92794389 -56722648 + PB1 SINE Alu 43 127 0 5 1292 393 22 0 0 chr6 92795602 92795648 -56721389 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1292 22 70 0 0 chr6 92795743 92795786 -56721251 + AT_rich Low_complexity Low_complexity 1 43 0 5 1292 295 214 141 12 chr6 92796533 92796618 -56720419 - B1F1 SINE Alu -2 147 52 5 1292 351 242 0 0 chr6 92797618 92797717 -56719320 + (TA)n Simple_repeat Simple_repeat 1 99 0 5 1293 558 176 156 23 chr6 92799923 92800051 -56716986 - B1F SINE Alu 0 149 5 5 1293 323 141 0 15 chr6 92800551 92800616 -56716421 + CT-rich Low_complexity Low_complexity 3 66 0 5 1293 385 212 195 0 chr6 92801338 92801457 -56715580 + L1_Rod LINE L1 4308 4453 -1424 5 1293 781 258 9 25 chr6 92801447 92801749 -56715288 + Lx9 LINE L1 5659 6010 -290 5 1293 644 123 9 28 chr6 92801955 92802064 -56714973 - B1_Mur4 SINE Alu -12 138 32 5 1293 3526 198 88 77 chr6 92802066 92802987 -56714050 + Lx9 LINE L1 6424 7354 -290 5 1293 675 106 268 0 chr6 92802994 92803110 -56713927 + B2_Mm2 SINE B2 14 152 -43 5 1293 288 0 0 0 chr6 92803110 92803142 -56713895 + (TTA)n Simple_repeat Simple_repeat 2 33 0 5 1293 675 106 268 0 chr6 92803142 92803167 -56713870 + B2_Mm2 SINE B2 153 191 -4 5 1293 935 225 38 24 chr6 92803167 92803320 -56713717 + Lx9 LINE L1 7347 7505 -139 5 1293 642 171 147 0 chr6 92803320 92803449 -56713588 - B1_Mus1 SINE Alu 0 148 1 5 1293 935 225 38 24 chr6 92803449 92803461 -56713576 + Lx9 LINE L1 7506 7519 -125 5 1293 284 64 21 0 chr6 92803461 92803508 -56713529 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1293 935 225 38 24 chr6 92803508 92803628 -56713409 + Lx9 LINE L1 7520 7637 -7 5 1293 487 267 0 24 chr6 92805594 92805717 -56711320 + RSINE1 SINE B4 7 126 -39 5 1293 264 292 0 0 chr6 92806767 92806839 -56710198 + G-rich Low_complexity Low_complexity 3 74 0 5 1293 234 0 0 0 chr6 92807024 92807050 -56709987 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1293 411 317 7 27 chr6 92807468 92807614 -56709423 + RSINE1 SINE B4 11 153 -12 5 1293 181 302 19 0 chr6 92808225 92808278 -56708759 + L2 LINE L2 2529 2582 -837 5 1293 315 0 0 0 chr6 92808716 92808751 -56708286 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1293 492 281 60 65 chr6 92808806 92809023 -56708014 - B4A SINE B4 -75 217 2 5 1293 776 313 39 11 chr6 92811215 92811499 -56705538 - B4A SINE B4 0 292 1 5 1293 225 0 0 0 chr6 92811721 92811746 -56705291 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1293 551 182 8 0 chr6 92811890 92812011 -56705026 + (TG)n Simple_repeat Simple_repeat 1 122 0 5 1293 388 278 43 43 chr6 92812069 92812253 -56704784 - MER63D DNA AcHobo -79 982 799 5 1293 744 260 47 24 chr6 92812306 92812519 -56704518 + ID_B1 SINE B4 3 220 -4 5 1293 300 301 212 20 chr6 92812519 92812722 -56704315 - MER63D DNA AcHobo -503 558 317 5 1293 234 250 19 0 chr6 92813084 92813136 -56703901 + (CACG)n Simple_repeat Simple_repeat 2 54 0 5 1293 441 262 117 30 chr6 92814246 92814497 -56702540 + L1MB5 LINE L1 2683 2950 -3196 5 1293 620 229 113 32 chr6 92814593 92814672 -56702365 - Lx7 LINE L1 -1298 6398 6326 5 1293 204 40 0 0 chr6 92814672 92814697 -56702340 + (ATGGTG)n Simple_repeat Simple_repeat 4 28 0 5 1293 620 229 113 32 chr6 92814697 92814802 -56702235 - Lx7 LINE L1 -1371 6325 6200 5 1293 401 300 59 36 chr6 92814801 92815040 -56701997 + Lx7 LINE L1 7211 7470 -3 5 1293 275 261 90 0 chr6 92815043 92815177 -56701860 + L1MB5 LINE L1 3030 3175 -2971 5 1293 231 329 25 0 chr6 92815183 92815262 -56701775 + ID4_ SINE ID 2 82 -1 5 1293 347 222 258 26 chr6 92815265 92815456 -56701581 + L1MB5 LINE L1 3433 3666 -2474 5 1293 1711 292 92 68 chr6 92815591 92817152 -56699885 + L1MB5 LINE L1 3697 5295 -851 5 1293 372 94 0 0 chr6 92817260 92817313 -56699724 + (TTTTC)n Simple_repeat Simple_repeat 3 55 0 5 1293 747 275 5 39 chr6 92817330 92817538 -56699499 - ID_B1 SINE B4 -12 212 12 5 1293 1501 319 77 11 chr6 92817562 92818364 -56698673 + L1MB5 LINE L1 5320 6174 0 5 1293 501 279 31 0 chr6 92818807 92818936 -56698101 + RSINE1 SINE B4 2 134 -31 5 1293 353 39 20 0 chr6 92818947 92818998 -56698039 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1293 649 286 18 5 chr6 92820279 92820500 -56696537 - ID_B1 SINE B4 0 224 1 5 1293 289 225 42 0 chr6 92820794 92820865 -56696172 + MIR SINE MIR 96 169 -93 5 1293 406 271 106 57 chr6 92821168 92821309 -56695728 - ID_B1 SINE B4 0 224 77 5 1293 21 36 0 0 chr6 92822454 92822482 -56694555 + AT_rich Low_complexity Low_complexity 1 28 0 5 1293 216 0 0 0 chr6 92823263 92823287 -56693750 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1293 308 24 0 24 chr6 92823487 92823529 -56693508 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5 1293 280 197 0 70 chr6 92823570 92823641 -56693396 + B4A SINE B4 186 251 -41 5 1293 195 42 0 0 chr6 92823662 92823686 -56693351 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1293 201 74 0 0 chr6 92823699 92823726 -56693311 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1293 491 109 32 56 chr6 92823728 92823854 -56693183 - RMER17C LTR ERVK -135 275 153 5 1293 362 232 0 7 chr6 92823897 92824036 -56693001 + (TG)n Simple_repeat Simple_repeat 1 138 0 5 1293 342 0 0 0 chr6 92824105 92824143 -56692894 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1293 350 309 21 0 chr6 92824167 92824261 -56692776 - RSINE1 SINE B4 -66 99 4 5 1293 358 222 198 106 chr6 92824263 92824470 -56692567 - B4A SINE B4 -65 227 2 5 1293 271 344 10 20 chr6 92825474 92825572 -56691465 + PB1D10 SINE Alu 14 110 -7 5 1293 286 300 0 0 chr6 92825577 92825667 -56691370 + BC1_Mm scRNA scRNA 2 91 -61 5 1293 263 308 0 0 chr6 92826870 92826948 -56690089 - PB1D10 SINE Alu 0 117 40 5 1293 1794 149 96 46 chr6 92827716 92828082 -56688955 + ORR1C2 LTR MaLR 1 384 0 5 1293 234 291 48 19 chr6 92828232 92828337 -56688700 + BC1_Mm scRNA scRNA 4 111 -41 5 1293 186 43 0 0 chr6 92828610 92828633 -56688404 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 5 1293 377 192 24 18 chr6 92829263 92829427 -56687610 + (TCTCTG)n Simple_repeat Simple_repeat 4 168 0 5 1293 391 332 53 26 chr6 92830052 92830241 -56686796 - MER58A DNA MER1_type -25 199 6 5 1293 426 20 0 0 chr6 92831053 92831104 -56685933 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 1293 404 307 71 41 chr6 92831129 92831326 -56685711 + MIRb SINE MIR 18 220 -48 5 1293 269 282 0 0 chr6 92831488 92831566 -56685471 - PB1D9 SINE Alu -40 80 3 5 1293 672 245 21 0 chr6 92831818 92831961 -56685076 + RSINE1 SINE B4 3 148 -17 5 1293 685 216 65 36 chr6 92834853 92835021 -56682016 - ID_B1 SINE B4 -1 223 51 5 1293 248 345 7 0 chr6 92835027 92835169 -56681868 + L2 LINE L2 2567 2709 -710 5 1293 423 266 9 0 chr6 92835211 92835320 -56681717 - PB1D10 SINE Alu -7 110 1 5 1293 261 262 25 0 chr6 92835405 92835485 -56681552 + L2 LINE L2 2837 2918 -501 5 1293 216 0 0 0 chr6 92835696 92835720 -56681317 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1293 522 0 0 0 chr6 92835839 92835897 -56681140 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1293 1323 174 5 0 chr6 92838029 92838253 -56678784 + URR1B DNA MER1_type 1 225 0 5 1293 763 247 11 21 chr6 92838816 92839002 -56678035 - B3 SINE B2 -5 211 28 5 1293 574 78 0 0 chr6 92838997 92839074 -56677963 - B1_Mus1 SINE Alu -33 115 39 5 1293 486 0 0 0 chr6 92839495 92839549 -56677488 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1293 198 132 0 116 chr6 92839682 92839725 -56677312 - MER5A DNA MER1_type -1 188 151 5 1293 575 271 0 7 chr6 92841099 92841244 -56675793 - ID_B1 SINE B4 -1 223 80 5 1293 216 111 0 0 chr6 92842072 92842108 -56674929 + (TCC)n Simple_repeat Simple_repeat 1 36 0 5 1293 832 116 82 0 chr6 92842108 92842255 -56674782 - Lx LINE L1 -13 6641 6483 5 1293 272 236 82 163 chr6 92843088 92843235 -56673802 + RSINE1 SINE B4 31 165 0 5 1293 28 29 0 0 chr6 92843285 92843320 -56673717 + AT_rich Low_complexity Low_complexity 1 35 0 5 1293 246 62 0 0 chr6 92843334 92843366 -56673671 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 5 1293 1183 62 7 0 chr6 92843366 92843512 -56673525 - B1_Mm SINE Alu 0 147 1 5 1293 209 163 20 0 chr6 92845242 92845291 -56671746 + G-rich Low_complexity Low_complexity 2 51 0 5 1293 335 310 11 0 chr6 92845446 92845533 -56671504 - B3A SINE B2 -108 90 3 5 1293 563 270 0 0 chr6 92845569 92845684 -56671353 - B1_Mur1 SINE Alu -32 117 3 5 1293 799 175 227 0 chr6 92845810 92846004 -56671033 + MTD LTR MaLR 182 419 0 5 1293 708 239 114 44 chr6 92846124 92846395 -56670642 - B4A SINE B4 0 292 3 5 1293 203 297 0 0 chr6 92846642 92846706 -56670331 + GA-rich Low_complexity Low_complexity 3 66 0 5 1293 228 232 0 0 chr6 92846819 92846875 -56670162 + CT-rich Low_complexity Low_complexity 1 56 0 5 1293 611 199 43 14 chr6 92847670 92847845 -56669192 - B3 SINE B2 -5 190 4 5 1293 878 175 147 5 chr6 92847904 92848094 -56668943 + L1_Mur2 LINE L1 703 919 -6167 5 1293 332 22 22 0 chr6 92848104 92848149 -56668888 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 5 1293 1669 87 189 7 chr6 92848159 92848314 -56668723 + L1_Mur2 LINE L1 1851 2048 -3829 5 1293 414 0 0 0 chr6 92848314 92848360 -56668677 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1293 369 0 0 0 chr6 92848360 92848400 -56668637 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1293 1669 87 189 7 chr6 92848400 92848545 -56668492 + L1_Mur2 LINE L1 2049 2205 -3672 5 1293 418 89 0 0 chr6 92848539 92848595 -56668442 + L1_Mur2 LINE L1 5526 5581 -296 6 1293 8035 135 38 17 chr6 92848573 92849926 -56667111 + Lx4A LINE L1 5688 7057 -1 6 1293 648 0 0 0 chr6 92849944 92850016 -56667021 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 6 1293 489 34 0 0 chr6 92850018 92850077 -56666960 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 6 1293 300 247 27 27 chr6 92850865 92850940 -56666097 - L1ME5 LINE L1 -15 6179 6105 6 1293 979 247 34 4 chr6 92852340 92852608 -56664429 - B4 SINE B4 -12 280 5 6 1293 228 272 102 46 chr6 92854067 92854175 -56662862 + L2c LINE L2 3274 3387 0 6 1293 315 96 0 0 chr6 92854479 92854531 -56662506 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1293 996 148 122 0 chr6 92854907 92855103 -56661934 - URR1A DNA MER1_type 0 226 7 6 1293 753 353 68 0 chr6 92856867 92857190 -56659847 + MER2 DNA MER2_type 1 345 0 6 1293 414 0 0 0 chr6 92857786 92857832 -56659205 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1293 378 0 0 0 chr6 92857832 92857873 -56659164 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1293 564 87 0 0 chr6 92858340 92858432 -56658605 + (A)n Simple_repeat Simple_repeat 1 92 0 6 1293 249 257 0 41 chr6 92859008 92859081 -56657956 + ID4_ SINE ID 3 72 -11 6 1293 331 286 41 106 chr6 92859166 92859412 -56657625 + Charlie8 DNA MER1_type 40 269 -2159 6 1293 263 326 45 30 chr6 92859459 92859592 -56657445 + MER20 DNA MER1_type 83 217 -2 6 1293 248 77 0 25 chr6 92860407 92860447 -56656590 + (TTA)n Simple_repeat Simple_repeat 1 39 0 6 1293 336 337 24 6 chr6 92860517 92860687 -56656350 - MIR SINE MIR -75 187 15 6 1293 269 363 104 16 chr6 92861123 92861316 -56655721 - MER2 DNA MER2_type -9 336 127 6 1293 200 352 0 0 chr6 92861369 92861440 -56655597 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 6 1293 924 234 101 0 chr6 92861448 92861666 -56655371 - B4 SINE B4 -49 243 4 6 1293 278 263 182 10 chr6 92861709 92861901 -56655136 + Charlie5 DNA MER1_type 2400 2624 0 6 1293 290 267 11 22 chr6 92862278 92862370 -56654667 + MIRb SINE MIR 78 168 -100 6 1293 1122 246 22 11 chr6 92862992 92863259 -56653778 + B4A SINE B4 5 274 -18 6 1293 278 67 0 22 chr6 92863265 92863311 -56653726 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1293 182 91 30 0 chr6 92863544 92863577 -56653460 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 6 1293 557 49 12 0 chr6 92864339 92864420 -56652617 + L1_Mus2 LINE L1 6485 6566 0 6 1293 182 286 62 16 chr6 92864809 92864873 -56652164 - MIRm SINE MIR -125 151 85 6 1293 671 304 50 50 chr6 92865171 92865413 -56651624 - B4 SINE B4 -18 274 33 6 1293 375 329 0 26 chr6 92865490 92865643 -56651394 + L1MB8 LINE L1 5874 6022 -162 6 1293 2547 236 58 31 chr6 92865804 92866539 -56650498 - Lx9 LINE L1 -856 4991 4237 6 1293 2602 212 71 55 chr6 92866539 92867296 -56649741 + Lx9 LINE L1 5017 5794 -53 6 1293 816 221 0 0 chr6 92867296 92867436 -56649601 + B1_Mus2 SINE Alu 1 140 -7 6 1293 486 0 0 0 chr6 92867440 92867494 -56649543 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 6 1293 2602 266 62 77 chr6 92867494 92867728 -56649309 + Lx9 LINE L1 5795 6055 -1589 6 1293 521 217 0 6 chr6 92867752 92867928 -56649109 + (TG)n Simple_repeat Simple_repeat 2 176 0 6 1293 998 75 97 0 chr6 92868076 92868210 -56648827 + B1_Mus2 SINE Alu 1 147 0 6 1293 461 17 17 0 chr6 92868235 92868293 -56648744 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 6 1293 253 232 58 0 chr6 92868673 92868742 -56648295 + RSINE1 SINE B4 64 136 -29 6 1293 723 214 0 0 chr6 92869017 92869148 -56647889 + B1_Mur2 SINE Alu 1 131 -18 6 1293 330 45 0 0 chr6 92869153 92869197 -56647840 + (CAA)n Simple_repeat Simple_repeat 1 44 0 6 1293 396 0 0 0 chr6 92869198 92869242 -56647795 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1293 999 307 54 31 chr6 92869692 92870233 -56646804 - L1MB7 LINE L1 -67 6117 5565 6 1293 243 344 72 0 chr6 92870268 92870393 -56646644 - RMER12 LTR ERVK -452 870 737 6 1293 425 266 37 0 chr6 92870691 92870800 -56646237 + PB1D10 SINE Alu 5 117 0 6 1293 357 24 0 0 chr6 92870820 92870862 -56646175 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1293 222 116 0 0 chr6 92870878 92870921 -56646116 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1293 182 327 110 30 chr6 92871146 92871310 -56645727 + MIR SINE MIR 86 262 0 6 1293 306 0 0 0 chr6 92871944 92871978 -56645059 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1293 300 281 23 30 chr6 92872338 92872470 -56644567 + MIR SINE MIR 110 240 -22 6 1293 333 0 0 0 chr6 92873439 92873476 -56643561 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1293 209 277 0 0 chr6 92873501 92873548 -56643489 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1293 388 289 71 16 chr6 92873548 92873731 -56643306 - L1M2 LINE L1 -911 5232 5040 6 1293 254 290 55 18 chr6 92873775 92873884 -56643153 + MIR SINE MIR 118 230 -32 6 1293 717 12 0 0 chr6 92873922 92874004 -56643033 + (GA)n Simple_repeat Simple_repeat 1 82 0 6 1293 275 203 0 104 chr6 92874049 92874126 -56642911 + ORR1D2 LTR MaLR 1 69 -301 6 1293 254 73 24 0 chr6 92875015 92875056 -56641981 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1293 441 309 15 7 chr6 92875197 92875334 -56641703 - B4A SINE B4 -154 138 1 6 1293 927 296 91 37 chr6 92876904 92877503 -56639534 + L1ME1 LINE L1 5196 5825 -354 6 1293 420 20 0 0 chr6 92878805 92878854 -56638183 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1293 184 59 0 56 chr6 92878860 92878896 -56638141 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1293 663 289 82 47 chr6 92878909 92879188 -56637849 + B4A SINE B4 4 292 0 6 1293 207 0 0 0 chr6 92879230 92879253 -56637784 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1293 261 0 0 0 chr6 92879253 92879282 -56637755 + (CCA)n Simple_repeat Simple_repeat 1 29 0 6 1293 237 65 0 0 chr6 92879282 92879313 -56637724 + (CAA)n Simple_repeat Simple_repeat 3 33 0 6 1293 210 191 24 0 chr6 92879460 92879502 -56637535 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 6 1293 230 279 70 20 chr6 92879987 92880085 -56636952 + B1_Mus1 SINE Alu 2 112 -15 6 1293 249 286 13 0 chr6 92880981 92881058 -56635979 + RMER15 LTR ERVL 392 469 -106 6 1293 347 294 10 0 chr6 92881376 92881478 -56635559 + PB1D10 SINE Alu 4 106 -11 6 1293 206 289 21 53 chr6 92881595 92881690 -56635347 + MIRb SINE MIR 77 168 -100 6 1293 35 24 0 0 chr6 92882037 92882079 -56634958 + AT_rich Low_complexity Low_complexity 1 42 0 6 1293 698 271 72 14 chr6 92882688 92882909 -56634128 + B4A SINE B4 55 288 -4 6 1293 183 156 0 0 chr6 92883457 92883489 -56633548 + T-rich Low_complexity Low_complexity 3 34 0 6 1293 642 239 7 21 chr6 92884691 92884836 -56632201 + B1_Mur4 SINE Alu 3 145 -5 6 1293 419 180 67 0 chr6 92885922 92886011 -56631026 - B1F SINE Alu 0 149 55 6 1293 290 260 93 10 chr6 92887004 92887101 -56629936 + MIR SINE MIR 33 137 -125 6 1293 180 274 16 31 chr6 92888567 92888631 -56628406 + MER5A DNA MER1_type 98 160 -29 6 1293 453 81 0 0 chr6 92889286 92889348 -56627689 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1293 266 156 16 0 chr6 92889665 92889729 -56627308 + GA-rich Low_complexity Low_complexity 2 66 0 6 1293 26 30 0 0 chr6 92893518 92893551 -56623486 + GC_rich Low_complexity Low_complexity 1 33 0 6 1293 477 298 80 37 chr6 92895445 92895633 -56621404 + B3A SINE B2 1 196 -2 6 1293 26 0 0 0 chr6 92896014 92896040 -56620997 + AT_rich Low_complexity Low_complexity 1 26 0 6 1293 357 200 27 91 chr6 92896042 92896229 -56620808 - RMER17C LTR ERVK -139 271 97 6 1293 624 227 13 60 chr6 92896454 92896604 -56620433 + B1_Mur2 SINE Alu 6 148 -1 6 1293 219 283 0 32 chr6 92896701 92896763 -56620274 + CT-rich Low_complexity Low_complexity 4 63 0 6 1293 260 299 67 59 chr6 92896806 92896941 -56620096 - B1F SINE Alu -13 136 1 6 1293 913 214 33 19 chr6 92897708 92897918 -56619119 - B3 SINE B2 -2 214 2 6 1293 367 214 76 19 chr6 92898088 92898193 -56618844 - B1_Mus2 SINE Alu -36 111 1 6 1293 390 91 0 0 chr6 92898445 92898500 -56618537 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 6 1293 1190 54 0 0 chr6 92898500 92898647 -56618390 - B1_Mus2 SINE Alu 0 147 1 6 1293 1087 214 114 23 chr6 92899102 92899245 -56617792 - Lx7 LINE L1 0 7696 7549 6 1293 578 27 27 0 chr6 92899245 92899320 -56617717 + (TATAA)n Simple_repeat Simple_repeat 1 77 0 6 1293 1087 214 114 23 chr6 92899320 92899482 -56617555 - Lx7 LINE L1 -148 7548 7365 6 1293 549 0 0 0 chr6 92899482 92899543 -56617494 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1293 5424 178 68 31 chr6 92899557 92901023 -56616014 - Lx7 LINE L1 -826 6870 5320 6 1293 300 248 48 19 chr6 92901034 92901137 -56615900 - RSINE1 SINE B4 -58 107 2 6 1293 266 341 43 22 chr6 92901406 92901543 -56615494 - MIR SINE MIR -128 134 3 6 1293 345 286 24 0 chr6 92903091 92903175 -56613862 - ID_B1 SINE B4 -81 143 58 6 1293 228 274 27 0 chr6 92903180 92903253 -56613784 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1293 433 195 17 17 chr6 92903265 92903380 -56613657 + (CATA)n Simple_repeat Simple_repeat 1 115 0 6 1293 279 192 0 0 chr6 92904537 92904615 -56612422 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1293 605 189 6 0 chr6 92904654 92904823 -56612214 + (TG)n Simple_repeat Simple_repeat 1 170 0 6 1293 578 198 6 0 chr6 92904847 92905024 -56612013 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 1293 415 258 94 65 chr6 92905028 92905198 -56611839 - B4A SINE B4 0 292 118 6 1293 21 0 0 0 chr6 92905721 92905742 -56611295 + AT_rich Low_complexity Low_complexity 1 21 0 6 1293 570 128 0 0 chr6 92905906 92906000 -56611037 + (TGGA)n Simple_repeat Simple_repeat 1 94 0 7 1293 188 370 74 0 chr6 92906356 92906464 -56610573 + L2b LINE L2 3259 3374 -1 7 1293 1258 69 108 6 chr6 92907868 92908044 -56608993 + B2_Mm2 SINE B2 1 194 -1 7 1293 989 154 181 0 chr6 92908795 92908977 -56608060 + B3 SINE B2 2 216 0 7 1293 222 205 0 0 chr6 92909020 92909059 -56607978 + PB1 SINE Alu 26 64 -63 7 1293 22 70 0 0 chr6 92909084 92909127 -56607910 + AT_rich Low_complexity Low_complexity 1 43 0 7 1293 1037 244 95 27 chr6 92909163 92909500 -56607537 - L1MB5 LINE L1 -9 6165 5806 7 1293 421 277 49 83 chr6 92909638 92909809 -56607228 - B4A SINE B4 -120 172 1 7 1293 465 260 124 0 chr6 92909817 92909986 -56607051 - L1MB5 LINE L1 -518 5666 5477 7 1293 369 75 0 0 chr6 92910001 92910054 -56606983 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1293 245 291 0 55 chr6 92910501 92910592 -56606445 - MER21B LTR ERV1 -774 89 4 7 1293 463 173 19 9 chr6 92911343 92911448 -56605589 + CT-rich Low_complexity Low_complexity 1 106 0 7 1293 1285 81 11 11 chr6 92911450 92911624 -56605413 - B2_Mm2 SINE B2 -19 176 3 7 1293 667 306 101 6 chr6 92913368 92913716 -56603321 + MLT1B LTR MaLR 1 381 -9 7 1293 1034 263 116 61 chr6 92913822 92913999 -56603038 - Lx9 LINE L1 -21 7623 7426 7 1293 531 0 0 0 chr6 92913999 92914058 -56602979 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 7 1293 1034 263 116 61 chr6 92914058 92914390 -56602647 - Lx9 LINE L1 -219 7425 7086 7 1293 947 280 27 68 chr6 92914396 92914691 -56602346 + Lx5 LINE L1 6768 7050 0 7 1293 659 255 0 0 chr6 92914718 92914859 -56602178 + B1_Mus2 SINE Alu 1 141 -6 7 1293 2001 259 107 36 chr6 92914886 92915496 -56601541 - Lx9 LINE L1 -561 7083 6431 7 1293 1654 258 70 23 chr6 92915513 92915986 -56601051 + Lx8 LINE L1 5296 5790 -90 7 1293 964 71 7 7 chr6 92915989 92916130 -56600907 + B1_Mus2 SINE Alu 6 146 -1 7 1293 456 252 42 7 chr6 92916166 92916310 -56600727 + Lx8 LINE L1 5780 5928 -1545 7 1293 26 0 0 0 chr6 92916360 92916386 -56600651 + AT_rich Low_complexity Low_complexity 1 26 0 7 1293 260 296 11 0 chr6 92917060 92917148 -56599889 + PB1D10 SINE Alu 27 115 -2 7 1293 2836 84 40 13 chr6 92917292 92917739 -56599298 - MusHAL1 LINE L1 -1789 923 465 7 1293 615 88 0 0 chr6 92918052 92918143 -56598894 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 7 1293 423 0 0 0 chr6 92918560 92918607 -56598430 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1293 214 250 0 0 chr6 92919832 92919884 -56597153 + L2 LINE L2 2410 2461 -958 7 1293 1576 193 98 0 chr6 92919988 92920304 -56596733 + MTC LTR MaLR 67 413 -8 7 1293 252 299 126 40 chr6 92920428 92920602 -56596435 - MER20 DNA MER1_type -2 217 29 7 1293 2345 191 31 13 chr6 92921506 92921957 -56595080 + MERVL_2A-int LTR ERVL 3319 3777 -1984 7 1293 4808 213 48 10 chr6 92921954 92922944 -56594093 + MERVL_2A-int LTR ERVL 3926 4952 -809 7 1293 1101 159 7 115 chr6 92922944 92923214 -56593823 + MT2A LTR ERVL 293 533 0 7 1293 278 184 103 26 chr6 92924106 92924184 -56592853 + MamSINE1 SINE tRNA 7 90 -200 7 1293 981 22 29 22 chr6 92924422 92924561 -56592476 + (CACCAT)n Simple_repeat Simple_repeat 2 141 0 7 1293 194 259 8 0 chr6 92924938 92924997 -56592040 - MIRb SINE MIR -205 71 11 7 1293 682 312 50 53 chr6 92925385 92925781 -56591256 - Lx9 LINE L1 -25 7619 7225 7 1293 429 292 0 0 chr6 92925795 92925901 -56591136 - Lx8 LINE L1 -429 7044 6939 7 1293 297 241 36 0 chr6 92925977 92926060 -56590977 - Lx9 LINE L1 -680 6964 6879 7 1293 531 302 0 7 chr6 92926046 92926186 -56590851 - Lx9 LINE L1 -906 6738 6600 7 1293 333 0 0 0 chr6 92926210 92926247 -56590790 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1293 591 294 7 0 chr6 92926253 92926399 -56590638 - RSINE1 SINE B4 -17 148 2 7 1293 490 310 8 0 chr6 92926631 92926760 -56590277 - ID_B1 SINE B4 -14 210 81 7 1293 775 274 117 35 chr6 92926863 92927276 -56589761 + Lx9 LINE L1 5511 5985 -1659 7 1293 2239 275 92 33 chr6 92927538 92928336 -56588701 + Lx9 LINE L1 6410 7254 -390 7 1293 184 328 0 15 chr6 92928482 92928550 -56588487 + L2a LINE L2 3338 3404 -22 7 1293 256 275 58 0 chr6 92929780 92929849 -56587188 + B3 SINE B2 139 211 -5 7 161 283 293 230 0 chr6 92929903 92930094 -56586943 + L1MB2 LINE L1 5934 6168 -3 7 1294 213 39 0 0 chr6 92930110 92930136 -56586901 + (ATG)n Simple_repeat Simple_repeat 3 28 0 7 1294 228 324 89 42 chr6 92930930 92931120 -56585917 - L2a LINE L2 -309 3117 2919 7 1294 283 39 0 73 chr6 92931207 92931262 -56585775 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 1294 1163 68 0 0 chr6 92931265 92931411 -56585626 - B1_Mus1 SINE Alu -1 147 2 7 1294 538 268 11 38 chr6 92931653 92931862 -56585175 + MLT2B2 LTR ERVL 4 213 -307 7 1294 824 274 55 40 chr6 92932249 92932523 -56584514 - B4A SINE B4 -13 279 2 7 1294 758 277 11 11 chr6 92932752 92932942 -56584095 + B3 SINE B2 2 191 -25 7 1294 189 0 0 0 chr6 92932947 92932968 -56584069 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 7 1294 330 278 72 0 chr6 92934095 92934192 -56582845 - MER2 DNA MER2_type -158 187 84 7 1294 748 298 43 25 chr6 92934396 92934678 -56582359 - B4 SINE B4 -4 288 2 7 1294 971 127 14 0 chr6 92935697 92935839 -56581198 + B1_Mur4 SINE Alu 5 148 -2 7 1294 188 0 0 69 chr6 92935839 92935868 -56581169 + (TAA)n Simple_repeat Simple_repeat 2 28 0 7 1294 1210 167 108 4 chr6 92936407 92936647 -56580390 - MTC LTR MaLR -8 413 149 7 1294 402 300 141 60 chr6 92936667 92936849 -56580188 + B4 SINE B4 1 194 -98 7 1294 234 0 0 0 chr6 92936849 92936875 -56580162 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 7 1294 402 300 141 60 chr6 92936875 92936961 -56580076 + B4 SINE B4 195 291 -1 7 1294 317 188 12 0 chr6 92936970 92937050 -56579987 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1294 257 0 0 29 chr6 92937122 92937156 -56579881 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 7 1294 189 0 0 0 chr6 92938295 92938316 -56578721 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1294 227 301 45 74 chr6 92939688 92939864 -56577173 - MLT1B LTR MaLR -188 202 32 7 1294 737 154 0 7 chr6 92940579 92940723 -56576314 + (TG)n Simple_repeat Simple_repeat 1 143 0 7 1294 1371 248 67 9 chr6 92942138 92942480 -56574557 + ORR1D2 LTR MaLR 9 370 0 7 1294 216 0 0 0 chr6 92943534 92943558 -56573479 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1294 396 0 0 0 chr6 92943674 92943718 -56573319 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1294 409 271 262 106 chr6 92943732 92943984 -56573053 - B4 SINE B4 0 292 1 7 1294 920 315 128 19 chr6 92944433 92945113 -56571924 + L1MA4 LINE L1 5535 6289 -11 7 1294 5646 89 9 4 chr6 92945411 92946145 -56570892 - Lx3_Mus LINE L1 -3 7006 6269 7 1294 2445 94 3 11 chr6 92946149 92946504 -56570533 + Lx3_Mus LINE L1 5923 6274 -735 7 1294 1305 249 95 25 chr6 92946502 92946622 -56570415 - Lx8 LINE L1 -107 7366 7238 7 1294 342 0 0 0 chr6 92946622 92946660 -56570377 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 1294 1305 249 95 25 chr6 92946660 92946983 -56570054 - Lx8 LINE L1 -236 7237 6893 7 1294 2166 159 65 13 chr6 92946983 92947366 -56569671 - MTC LTR MaLR 0 421 19 7 1294 2258 276 61 18 chr6 92947379 92948051 -56568986 - Lx8 LINE L1 -577 6896 6196 7 1294 216 67 0 0 chr6 92948228 92948258 -56568779 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1294 325 295 61 61 chr6 92948574 92948722 -56568315 + RSINE1 SINE B4 2 149 -16 7 1294 239 26 88 38 chr6 92948722 92948802 -56568235 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 1294 402 369 64 56 chr6 92948840 92949248 -56567789 - MLT1J LTR MaLR -101 411 1 7 1294 1096 237 69 11 chr6 92950276 92950536 -56566501 + B4A SINE B4 1 275 -17 7 1294 202 209 0 23 chr6 92950586 92950630 -56566407 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1294 600 14 0 0 chr6 92950631 92950700 -56566337 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1294 248 284 28 64 chr6 92950769 92950878 -56566159 - Kanga11a DNA Tc2 -25 945 841 7 1294 188 135 27 0 chr6 92951725 92951762 -56565275 + CT-rich Low_complexity Low_complexity 3 40 0 7 1294 398 321 79 12 chr6 92952594 92952758 -56564279 - MER5A DNA MER1_type -14 175 1 7 1294 655 301 28 73 chr6 92952794 92953061 -56563976 + ORR1E LTR MaLR 1 252 -118 7 1294 872 344 15 0 chr6 92953954 92954224 -56562813 + B4 SINE B4 1 274 -18 7 1294 487 92 11 11 chr6 92954228 92954316 -56562721 + (CA)n Simple_repeat Simple_repeat 1 88 0 7 1294 450 0 0 0 chr6 92955067 92955117 -56561920 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1294 378 269 154 38 chr6 92956083 92956289 -56560748 + B4A SINE B4 39 284 -8 7 1294 405 0 0 0 chr6 92956304 92956349 -56560688 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1294 214 232 143 0 chr6 92956378 92956434 -56560603 - B4A SINE B4 -225 67 4 7 1294 529 305 92 23 chr6 92956434 92956651 -56560386 - MLT1E3 LTR MaLR -37 587 356 7 1294 6687 79 11 40 chr6 92956731 92957709 -56559328 - Lx3_Mus LINE L1 -835 5051 4102 7 1294 10614 77 94 7 chr6 92957706 92958470 -56558567 + Lx3_Mus LINE L1 5041 5906 -1103 7 1294 189 0 0 0 chr6 92958470 92958491 -56558546 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 7 1294 10614 74 18 6 chr6 92958491 92959568 -56557469 + Lx3_Mus LINE L1 5907 7000 -9 7 1294 212 231 91 15 chr6 92959698 92959764 -56557273 - PB1D7 SINE Alu -20 100 30 7 1294 240 210 47 31 chr6 92959942 92960006 -56557031 + RMER12B LTR ERVK 68 132 -1272 7 1294 357 257 136 42 chr6 92960634 92960825 -56556212 + MER3 DNA MER1_type 1 209 0 7 1294 706 254 0 23 chr6 92960883 92961056 -56555981 - B4A SINE B4 -2 290 122 7 1294 511 315 76 23 chr6 92961061 92961233 -56555804 - B3A SINE B2 -16 182 2 7 1294 766 262 158 0 chr6 92961760 92961943 -56555094 - B3 SINE B2 -3 213 2 7 1294 304 322 25 25 chr6 92962822 92962940 -56554097 + B1F2 SINE Alu 32 149 0 7 1294 485 232 92 109 chr6 92963616 92963790 -56553247 + B4A SINE B4 2 172 -120 7 1294 1335 223 188 20 chr6 92963802 92964159 -56552878 - MTD LTR MaLR -2 417 1 7 1294 606 176 0 0 chr6 92964203 92964322 -56552715 + CT-rich Low_complexity Low_complexity 3 121 0 7 1294 346 212 25 14 chr6 92966257 92966346 -56550691 + MLT1A0 LTR MaLR 1 94 -280 8 1294 490 319 41 62 chr6 92966370 92966564 -56550473 + MLT1A0 LTR MaLR 163 352 -13 8 1294 1512 164 0 9 chr6 92966747 92966975 -56550062 + URR1A DNA MER1_type 1 226 0 8 1294 315 0 0 0 chr6 92967646 92967681 -56549356 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1294 540 81 0 0 chr6 92967681 92967755 -56549282 + (GA)n Simple_repeat Simple_repeat 2 75 0 8 1294 431 290 67 95 chr6 92967850 92968029 -56549008 - B4A SINE B4 -117 175 2 8 1294 273 29 0 0 chr6 92968481 92968515 -56548522 + (T)n Simple_repeat Simple_repeat 1 34 0 8 1294 228 321 25 13 chr6 92969739 92969818 -56547219 + MIRb SINE MIR 53 132 -136 8 1294 257 257 138 79 chr6 92969953 92970105 -56546932 + MER117 DNA MER1_type 1 161 -36 8 1294 444 281 15 45 chr6 92970428 92970562 -56546475 + RSINE1 SINE B4 2 131 -34 8 1294 5902 61 0 27 chr6 92970612 92971341 -56545696 + L1_Mus2 LINE L1 5856 6564 -2 8 1294 729 331 86 6 chr6 92971433 92971746 -56545291 + MER2 DNA MER2_type 2 339 -6 8 1294 230 229 168 0 chr6 92971809 92971883 -56545154 - PB1D10 SINE Alu -20 100 13 8 1294 293 368 30 35 chr6 92972055 92972224 -56544813 + Cheshire DNA MER1_type 4 171 -2249 8 1294 596 371 9 13 chr6 92973132 92973356 -56543681 + B4A SINE B4 2 224 -68 8 1294 237 211 0 0 chr6 92973447 92973499 -56543538 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1294 952 234 254 0 chr6 92974536 92974867 -56542170 + Lx9 LINE L1 6462 6876 -768 8 1294 2697 63 0 0 chr6 92974899 92975218 -56541819 + L1_Mus1 LINE L1 6249 6567 0 8 1294 258 32 0 0 chr6 92978312 92978343 -56538694 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1294 264 282 0 37 chr6 92978536 92978617 -56538420 + ID4 SINE ID 3 80 -3 8 1294 701 317 61 34 chr6 92978809 92979106 -56537931 + MLT1A LTR MaLR 27 331 -43 8 1294 4652 52 2 16 chr6 92979459 92980041 -56536996 + L1Md_F2 LINE L1 5984 6557 -25 8 1294 180 0 0 0 chr6 92980043 92980063 -56536974 + (TAA)n Simple_repeat Simple_repeat 1 20 0 8 1294 265 325 11 40 chr6 92980067 92980238 -56536799 + Lx9 LINE L1 2201 2372 -3508 8 1294 295 150 81 32 chr6 92980238 92980300 -56536737 - ORR1C2 LTR MaLR 0 384 310 8 1294 3550 272 87 38 chr6 92980311 92981543 -56535494 + Lx9 LINE L1 2423 3687 -2193 8 1294 246 32 0 0 chr6 92981543 92981574 -56535463 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1294 3550 272 87 38 chr6 92981574 92981908 -56535129 + Lx9 LINE L1 3688 4067 -1813 8 1294 1566 167 94 70 chr6 92981935 92982264 -56534773 - RMER19A LTR ERVK -113 624 288 8 1294 779 144 0 8 chr6 92982262 92982388 -56534649 + RMER19A LTR ERVK 613 737 0 8 1294 2341 258 79 28 chr6 92982392 92983318 -56533719 + L1M2 LINE L1 4356 5335 -845 8 1294 1662 98 66 8 chr6 92983322 92983580 -56533457 - ORR1A2 LTR MaLR -9 318 46 8 1294 916 240 88 28 chr6 92983549 92983798 -56533239 + MTD LTR MaLR 142 405 -14 8 1294 1462 272 55 20 chr6 92983809 92984321 -56532716 + Lx9 LINE L1 5362 5889 -1755 8 1294 4308 60 19 17 chr6 92984321 92984845 -56532192 - L1Md_F2 LINE L1 -12 6570 6046 8 1294 912 286 47 45 chr6 92984845 92984923 -56532114 + Lx9 LINE L1 5890 5969 -1675 8 1294 252 0 0 0 chr6 92984926 92984954 -56532083 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1294 540 0 0 0 chr6 92985172 92985232 -56531805 + (TAAAA)n Simple_repeat Simple_repeat 2 61 0 8 1294 2926 282 58 47 chr6 92985246 92986630 -56530407 + Lx8 LINE L1 6040 7470 -3 8 1294 485 284 30 15 chr6 92986666 92986918 -56530119 + L1MA8 LINE L1 5665 5923 -377 8 1294 686 268 48 11 chr6 92987127 92987333 -56529704 - MTD LTR MaLR -16 403 197 8 1294 498 75 0 0 chr6 92987335 92987402 -56529635 + (TCC)n Simple_repeat Simple_repeat 3 69 0 8 1294 675 215 0 8 chr6 92987417 92987539 -56529498 - B1_Mur2 SINE Alu -28 121 1 8 1294 1021 223 29 14 chr6 92987539 92987745 -56529292 - MTD LTR MaLR -210 209 1 8 1294 614 288 39 46 chr6 92987945 92988458 -56528579 + L1M4c LINE L1 572 1159 -5225 8 1294 493 241 188 26 chr6 92988489 92988723 -56528314 + L1M4c LINE L1 2223 2494 -3890 8 1294 2084 186 189 53 chr6 92988872 92989396 -56527641 + RMER19B LTR ERVK 308 902 0 8 1294 373 240 92 8 chr6 92989461 92989591 -56527446 + L1M4c LINE L1 2668 2808 -3574 8 1294 371 310 45 113 chr6 92989704 92989734 -56527303 + B4 SINE B4 71 166 -126 8 1294 748 196 0 14 chr6 92989734 92989874 -56527163 + B1_Mur1 SINE Alu 12 149 0 8 1294 371 310 45 113 chr6 92989874 92989902 -56527135 + B4 SINE B4 167 265 -27 8 1294 1890 281 148 54 chr6 92989908 92991138 -56525899 + L1M4c LINE L1 3173 4542 -1837 8 1294 3755 141 18 16 chr6 92991146 92991752 -56525285 - L1_Mur2 LINE L1 -112 5765 5159 8 1294 326 277 127 85 chr6 92991753 92991888 -56525149 + L1M4c LINE L1 4634 4798 -1578 8 1294 270 0 0 0 chr6 92991888 92991918 -56525119 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 8 1294 1085 92 0 14 chr6 92991920 92992063 -56524974 - B1_Mus1 SINE Alu -4 144 4 8 1294 326 277 127 85 chr6 92992063 92992335 -56524702 + L1M4c LINE L1 4799 5061 -1315 8 1294 1147 256 20 53 chr6 92992344 92992645 -56524392 + B4 SINE B4 2 292 0 8 1294 614 109 16 16 chr6 92992647 92992768 -56524269 + (CA)n Simple_repeat Simple_repeat 1 121 0 8 1294 732 254 122 68 chr6 92992800 92993187 -56523850 + L1M4c LINE L1 5127 5553 -829 8 1294 584 294 44 32 chr6 92993187 92993345 -56523692 + RSINE1 SINE B4 3 162 -3 8 1294 732 272 61 42 chr6 92993345 92993535 -56523502 + L1M4c LINE L1 5554 5729 -690 8 1294 237 380 13 0 chr6 92994257 92994336 -56522701 - ID4 SINE ID 0 83 4 8 1294 224 250 184 20 chr6 92994360 92994458 -56522579 + L2a LINE L2 3312 3425 -1 8 1294 601 140 0 31 chr6 92994664 92994760 -56522277 + B1_Mus2 SINE Alu 48 140 -7 8 1294 243 0 0 0 chr6 92994760 92994787 -56522250 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1294 272 268 28 0 chr6 92995076 92995147 -56521890 - ID4_ SINE ID -3 80 8 8 1294 294 317 151 26 chr6 92995682 92996032 -56521005 - L2 LINE L2 -444 2975 2582 8 1294 3116 149 13 64 chr6 92996145 92996740 -56520297 - Lx9 LINE L1 -10 7634 7070 8 1294 372 271 190 14 chr6 92996969 92997111 -56519926 + B4 SINE B4 2 168 -124 8 1294 423 180 11 11 chr6 92997361 92997451 -56519586 + Lx2B LINE L1 6909 6998 -2 8 1294 231 300 45 9 chr6 92997455 92997566 -56519471 + MER2 DNA MER2_type 74 188 -157 8 1294 205 49 0 89 chr6 92997908 92997953 -56519084 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 8 1294 5521 207 56 26 chr6 92998850 93000000 -56517037 - Lx7 LINE L1 -111 7585 6402 8 1294 6502 176 34 19 chr6 93000000 93001675 -56515362 - Lx7 LINE L1 -1295 6401 4692 1 1294 2247 173 14 54 chr6 93001673 93002043 -56514994 - Lx7 LINE L1 -3220 2660 2309 1 1294 1015 145 14 0 chr6 93002043 93002188 -56514849 + B1_Mur4 SINE Alu 3 149 -1 2 1294 2247 173 14 54 chr6 93002188 93002300 -56514737 - Lx7 LINE L1 -3572 2308 2197 1 1294 335 176 208 7 chr6 93002294 93002443 -56514594 + Lx9 LINE L1 7451 7629 -15 3 1294 324 0 0 0 chr6 93003434 93003470 -56513567 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1294 2610 298 78 117 chr6 93003539 93003575 -56513462 - Lx8 LINE L1 -211 7262 7213 5 1294 477 0 0 0 chr6 93003575 93003628 -56513409 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1294 2610 298 78 117 chr6 93003628 93004611 -56512426 - Lx8 LINE L1 -261 7212 6228 5 1294 1367 84 22 11 chr6 93004611 93004791 -56512246 + B2_Mm2 SINE B2 2 183 -12 7 1294 2610 252 109 68 chr6 93004791 93006182 -56510855 - Lx8 LINE L1 -1246 6227 5207 5 1294 1591 242 64 0 chr6 93006201 93006544 -56510493 - ORR1D2 LTR MaLR 0 370 6 8 1294 8127 62 1 5 chr6 93007464 93008497 -56508540 - L1Md_F2 LINE L1 -2 6580 5541 9 1294 362 274 8 117 chr6 93008669 93008797 -56508240 - MLT1F LTR MaLR -9 540 427 1 1294 709 185 50 29 chr6 93009099 93009238 -56507799 - MTD LTR MaLR -8 411 270 1 1294 423 0 0 0 chr6 93010971 93011018 -56506019 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1294 768 305 51 16 chr6 93011028 93011281 -56505756 - B4A SINE B4 -30 262 1 1 1294 240 381 136 19 chr6 93011320 93011526 -56505511 - MLT1F LTR MaLR -320 275 46 1 1294 477 0 0 0 chr6 93011673 93011726 -56505311 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1294 294 29 0 0 chr6 93011726 93011760 -56505277 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1294 577 269 145 89 chr6 93012488 93012991 -56504046 - L1MC2 LINE L1 0 6344 5814 1 1294 21 0 0 0 chr6 93012991 93013012 -56504025 + AT_rich Low_complexity Low_complexity 1 21 0 1 1294 241 338 0 0 chr6 93013023 93013097 -56503940 - ID4 SINE ID -1 82 9 1 1294 500 0 17 0 chr6 93014218 93014278 -56502759 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1294 182 235 0 0 chr6 93017174 93017208 -56499829 + MER5A DNA MER1_type 45 78 -111 2 1294 24 0 0 0 chr6 93018305 93018329 -56498708 + AT_rich Low_complexity Low_complexity 1 24 0 2 1294 3793 38 62 2 chr6 93018400 93018848 -56498189 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1294 688 172 58 29 chr6 93019046 93019184 -56497853 - B4A SINE B4 -16 276 135 2 1294 229 197 240 64 chr6 93019088 93019213 -56497824 - B1_Mm SINE Alu 0 147 1 2 1294 198 159 15 45 chr6 93019843 93019909 -56497128 + GA-rich Low_complexity Low_complexity 2 65 0 2 1294 204 40 0 0 chr6 93020276 93020301 -56496736 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1294 459 0 0 0 chr6 93020518 93020569 -56496468 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1294 513 0 0 0 chr6 93020569 93020625 -56496412 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1294 213 39 0 0 chr6 93020627 93020653 -56496384 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1294 369 289 43 43 chr6 93020909 93021050 -56495987 - MER5A1 DNA MER1_type -24 142 2 3 1294 463 327 43 111 chr6 93021123 93021402 -56495635 - L2b LINE L2 0 3375 3116 3 1294 324 0 0 0 chr6 93021472 93021508 -56495529 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1294 491 246 62 23 chr6 93021515 93021644 -56495393 - RSINE1 SINE B4 -16 149 16 3 1294 399 312 69 54 chr6 93021664 93021867 -56495170 - MIRb SINE MIR -8 260 55 3 1294 240 59 0 0 chr6 93022195 93022229 -56494808 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1294 410 326 14 47 chr6 93022332 93022480 -56494557 + Charlie1a DNA MER1_type 37 179 -1276 3 1294 1251 307 72 8 chr6 93022673 93023185 -56493852 + Charlie1a DNA MER1_type 622 1166 -289 3 1294 2321 186 98 4 chr6 93023226 93023706 -56493331 - MT2A LTR ERVL -5 528 4 3 1294 389 226 141 34 chr6 93023711 93023917 -56493120 + Charlie1a DNA MER1_type 1210 1437 -18 3 1294 189 147 0 29 chr6 93023936 93023971 -56493066 + MIR SINE MIR 19 52 -210 3 1294 322 313 90 7 chr6 93024438 93024672 -56492365 - L2b LINE L2 -286 3140 2884 3 1294 279 292 75 68 chr6 93024689 93024968 -56492069 - L2b LINE L2 -721 2698 2418 3 1294 222 321 12 23 chr6 93025489 93025575 -56491462 - L3 LINE CR1 -856 3633 3549 3 1294 208 139 0 0 chr6 93025628 93025664 -56491373 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1294 230 350 88 0 chr6 93026459 93026539 -56490498 + PB1 SINE Alu 14 100 -27 4 1294 1191 203 154 24 chr6 93027713 93028051 -56488986 - Lx4B LINE L1 -5 7053 6672 4 1294 400 304 127 18 chr6 93028086 93028314 -56488723 - MLT1K LTR MaLR -320 275 23 4 1294 1307 283 21 21 chr6 93028318 93028654 -56488383 - MTEa LTR MaLR -6 373 38 4 1294 315 187 73 8 chr6 93028661 93028785 -56488252 - Lx9 LINE L1 -4 7640 7509 4 1294 399 187 32 42 chr6 93028806 93028901 -56488136 - Lx9 LINE L1 -234 7410 7317 4 1294 874 95 8 16 chr6 93028912 93029040 -56487997 - RMER1C Other Other -8 1334 1208 4 1294 243 229 0 0 chr6 93029040 93029101 -56487936 + G-rich Low_complexity Low_complexity 3 63 0 4 1294 1106 164 27 94 chr6 93029107 93029135 -56487902 - RMER1C Other Other -120 1222 1198 4 1294 264 59 0 0 chr6 93029135 93029169 -56487868 + (CAA)n Simple_repeat Simple_repeat 3 36 0 4 1294 1106 164 27 94 chr6 93029169 93029396 -56487641 - RMER1C Other Other -145 1197 985 4 1294 2382 156 42 13 chr6 93029798 93030181 -56486856 + ORR1B1 LTR MaLR 1 394 0 4 1294 243 0 0 0 chr6 93030572 93030599 -56486438 + (GA)n Simple_repeat Simple_repeat 2 28 0 5 1294 436 291 18 9 chr6 93030815 93030926 -56486111 + ID_B1 SINE B4 59 170 -54 5 1294 396 0 0 0 chr6 93030935 93030979 -56486058 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1294 216 0 0 0 chr6 93030979 93031002 -56486035 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1294 672 13 0 0 chr6 93032745 93032822 -56484215 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 1294 846 312 44 4 chr6 93032904 93033155 -56483882 - B4 SINE B4 -29 263 3 5 1294 217 214 68 41 chr6 93034758 93034831 -56482206 + L3 LINE CR1 17 91 -4398 5 1294 198 0 0 0 chr6 93035322 93035344 -56481693 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 5 1294 858 155 27 27 chr6 93035345 93035491 -56481546 - B1_Mur4 SINE Alu 0 150 5 5 1294 333 0 0 0 chr6 93035792 93035829 -56481208 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1294 450 0 0 0 chr6 93037102 93037152 -56479885 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1294 198 209 0 0 chr6 93038139 93038182 -56478855 + CT-rich Low_complexity Low_complexity 3 45 0 6 1294 854 154 280 0 chr6 93038517 93038692 -56478345 - URR1B DNA MER1_type -1 224 1 6 1294 364 321 46 0 chr6 93039125 93039234 -56477803 + PB1D7 SINE Alu 1 114 -6 6 1294 583 327 61 61 chr6 93040313 93040590 -56476447 - B4 SINE B4 -14 278 2 6 1294 2768 169 60 34 chr6 93040680 93040995 -56476042 - RLTR20B3 LTR ERVK 0 577 249 6 1294 432 37 0 0 chr6 93040995 93041049 -56475988 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1294 2768 169 60 34 chr6 93041049 93041295 -56475742 - RLTR20B3 LTR ERVK -329 248 2 6 1294 211 28 0 53 chr6 93041452 93041490 -56475547 + (TTTTTG)n Simple_repeat Simple_repeat 6 41 0 6 1294 1228 69 7 0 chr6 93041490 93041635 -56475402 - B1_Mus2 SINE Alu 0 147 2 6 1294 486 355 107 10 chr6 93041880 93042281 -56474756 - L1MB3 LINE L1 -3 6180 5741 6 1294 452 281 35 17 chr6 93042390 93042564 -56474473 - MER33 DNA MER1_type -97 227 51 7 1294 360 0 0 0 chr6 93042948 93042988 -56474049 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 7 1294 1044 24 0 0 chr6 93042988 93043110 -56473927 + (TCTCCC)n Simple_repeat Simple_repeat 3 125 0 7 1294 318 232 0 0 chr6 93043130 93043186 -56473851 - B1F1 SINE Alu -93 56 1 7 1294 222 347 0 14 chr6 93043131 93043204 -56473833 - B4 SINE B4 -152 140 69 7 1294 465 34 0 0 chr6 93043337 93043396 -56473641 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 7 1294 756 309 65 54 chr6 93044197 93044645 -56472392 + Charlie4a DNA MER1_type 1 453 -55 7 1294 1063 191 85 0 chr6 93045519 93045718 -56471319 - B3 SINE B2 0 216 1 7 1294 183 367 0 0 chr6 93045748 93045797 -56471240 - L2a LINE L2 -18 3408 3360 7 1294 750 93 0 0 chr6 93045947 93046055 -56470982 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 7 1294 1389 161 4 9 chr6 93048151 93048377 -56468660 - URR1B DNA MER1_type 0 225 1 8 1294 206 366 117 10 chr6 93048383 93048579 -56468458 - MIR SINE MIR -26 236 20 8 1294 22 0 0 0 chr6 93048651 93048673 -56468364 + AT_rich Low_complexity Low_complexity 1 22 0 8 1294 221 57 0 28 chr6 93048747 93048783 -56468254 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1294 229 250 0 22 chr6 93048824 93048869 -56468168 - PB1D9 SINE Alu -76 44 1 8 1294 223 298 0 50 chr6 93048869 93048884 -56468153 - B4A SINE B4 -163 129 73 8 1294 396 305 48 41 chr6 93049141 93049288 -56467749 + B1F SINE Alu 1 148 -1 8 1294 21 36 0 0 chr6 93049833 93049861 -56467176 + AT_rich Low_complexity Low_complexity 1 28 0 8 1294 322 252 79 6 chr6 93049986 93050075 -56466962 + PB1D10 SINE Alu 21 115 -5 8 1294 192 324 14 14 chr6 93050111 93050183 -56466854 - MIRc SINE MIR -122 146 75 8 1294 266 374 107 19 chr6 93050196 93050411 -56466626 - MIR SINE MIR -14 248 15 9 1294 30461 108 13 24 chr6 93050606 93056557 -56460480 + L1_Mus2 LINE L1 675 6566 0 9 1294 391 69 0 0 chr6 93056584 93056642 -56460395 + L1_Mus3 LINE L1 6575 6632 -6 9 1294 288 0 0 0 chr6 93058361 93058393 -56458644 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1294 719 182 6 81 chr6 93059160 93059333 -56457704 - B3A SINE B2 -38 160 1 9 1294 603 0 0 0 chr6 93059369 93059436 -56457601 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 9 1294 1114 99 39 0 chr6 93060699 93060881 -56456156 - B2_Mm2 SINE B2 -1 194 6 9 161 568 265 90 24 chr6 93060997 93061163 -56455874 - B4 SINE B4 -7 285 109 9 1295 925 299 129 59 chr6 93061372 93062123 -56454914 - L1MA5 LINE L1 -3 6297 5494 9 1295 297 0 0 0 chr6 93062812 93062845 -56454192 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1295 243 173 0 71 chr6 93062879 93062935 -56454102 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1 1295 225 0 0 0 chr6 93062952 93062977 -56454060 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1295 342 214 0 0 chr6 93063020 93063109 -56453928 + (TG)n Simple_repeat Simple_repeat 1 89 0 1 1295 236 364 31 78 chr6 93063969 93064097 -56452940 - MER58B DNA MER1_type -2 339 218 1 1295 931 208 81 63 chr6 93064197 93064530 -56452507 - RLTR15 LTR ERVK -20 339 1 1 1295 1312 104 44 0 chr6 93064550 93064733 -56452304 - B2_Mm2 SINE B2 -4 191 1 1 1295 264 122 0 0 chr6 93064804 93064845 -56452192 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1295 433 271 0 0 chr6 93064895 93064991 -56452046 + ID_B1 SINE B4 111 206 -18 1 1295 279 264 0 0 chr6 93065053 93065125 -56451912 - ID4 SINE ID -2 81 10 1 1295 220 200 0 0 chr6 93065773 93065813 -56451224 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1 1295 297 0 0 0 chr6 93066133 93066166 -56450871 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1 1295 283 327 10 0 chr6 93067400 93067501 -56449536 + MIR SINE MIR 92 193 -69 1 1295 465 19 0 0 chr6 93068478 93068532 -56448505 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1295 360 267 112 0 chr6 93068567 93068683 -56448354 + MER58A DNA MER1_type 50 178 -46 1 1295 899 269 66 0 chr6 93068879 93069135 -56447902 + B4A SINE B4 2 274 -18 1 1295 201 246 0 0 chr6 93069213 93069278 -56447759 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1295 714 186 0 0 chr6 93070367 93070512 -56446525 + CT-rich Low_complexity Low_complexity 1 145 0 1 1295 217 291 0 34 chr6 93070549 93070638 -56446399 + GA-rich Low_complexity Low_complexity 5 90 0 1 1295 758 288 56 46 chr6 93071404 93071688 -56445349 + B4A SINE B4 2 288 -4 1 1295 424 359 77 4 chr6 93072298 93072544 -56444493 + B4A SINE B4 24 287 -5 1 1295 285 146 0 0 chr6 93072558 93072606 -56444431 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1295 627 303 11 22 chr6 93073023 93073205 -56443832 + ID_B1 SINE B4 45 224 0 1 1295 22 0 0 0 chr6 93073303 93073325 -56443712 + AT_rich Low_complexity Low_complexity 1 22 0 1 1295 297 68 0 0 chr6 93073475 93073519 -56443518 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1295 883 275 98 12 chr6 93073556 93073810 -56443227 - B4A SINE B4 -10 282 7 1 1295 204 40 0 0 chr6 93074203 93074228 -56442809 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1 1295 648 158 0 0 chr6 93074935 93075049 -56441988 + CT-rich Low_complexity Low_complexity 2 115 0 1 1295 1215 56 0 0 chr6 93075454 93075614 -56441423 + B2_Mm1t SINE B2 1 160 -33 1 1295 183 80 0 0 chr6 93075614 93075639 -56441398 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1 1295 245 311 90 83 chr6 93075852 93075996 -56441041 - MER20 DNA MER1_type -11 208 64 1 1295 422 335 29 6 chr6 93076015 93076085 -56440952 + ID SINE ID 12 85 -139 1 1295 496 209 48 0 chr6 93076085 93076190 -56440847 + B1_Mus2 SINE Alu 1 110 -37 1 1295 378 285 232 0 chr6 93076321 93076472 -56440565 + ID_B1 SINE B4 38 223 -1 1 1295 952 232 19 10 chr6 93076480 93076685 -56440352 + B3 SINE B2 4 210 -6 1 1295 904 222 41 50 chr6 93078269 93078487 -56438550 - B3 SINE B2 0 216 1 1 1295 330 335 93 29 chr6 93078495 93078667 -56438370 - MER5A DNA MER1_type -6 183 1 1 1295 21 0 0 0 chr6 93078749 93078770 -56438267 + AT_rich Low_complexity Low_complexity 1 21 0 1 1295 857 142 18 6 chr6 93078910 93079080 -56437957 + GA-rich Low_complexity Low_complexity 3 174 0 1 1295 405 0 0 0 chr6 93081058 93081103 -56435934 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1295 197 184 20 20 chr6 93081586 93081636 -56435401 + MIRb SINE MIR 116 165 -103 1 1295 829 136 0 60 chr6 93081943 93082092 -56434945 + B1_Mus2 SINE Alu 8 147 0 1 1295 201 147 0 0 chr6 93082110 93082144 -56434893 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1295 249 203 0 0 chr6 93082333 93082392 -56434645 + T-rich Low_complexity Low_complexity 1 59 0 1 1295 389 259 93 17 chr6 93082598 93082716 -56434321 + MTE2b LTR MaLR 229 356 -23 1 1295 188 34 0 33 chr6 93083443 93083473 -56433564 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 1 1295 1271 243 178 33 chr6 93083487 93084095 -56432942 + L1MA6 LINE L1 5296 5991 -309 1 1295 615 281 156 30 chr6 93084489 93084823 -56432214 + Lx8 LINE L1 6879 7254 -219 1 1295 243 0 0 0 chr6 93085363 93085390 -56431647 + (TTAG)n Simple_repeat Simple_repeat 2 28 0 1 1295 806 148 81 0 chr6 93085390 93085539 -56431498 - B2_Mm2 SINE B2 -34 161 1 1 1295 1117 273 62 20 chr6 93085930 93086285 -56430752 + MTE2b LTR MaLR 10 379 0 1 1295 240 59 0 0 chr6 93088061 93088095 -56428942 + (TTG)n Simple_repeat Simple_repeat 3 36 0 1 1295 772 238 73 16 chr6 93088252 93088444 -56428593 + B3 SINE B2 1 203 -13 1 1295 652 253 107 25 chr6 93089293 93089536 -56427501 - B4A SINE B4 -22 270 8 1 1295 318 317 29 0 chr6 93089557 93089661 -56427376 - PB1D10 SINE Alu -7 110 4 1 1295 251 331 89 25 chr6 93089947 93090105 -56426932 - MER117 DNA MER1_type -7 190 23 1 1295 461 281 56 84 chr6 93091376 93091555 -56425482 + B4A SINE B4 1 174 -118 1 1295 356 372 32 27 chr6 93091613 93091801 -56425236 - MLT1G LTR MaLR -393 198 10 1 1295 185 311 144 35 chr6 93091818 93091991 -56425046 - MIR SINE MIR -12 250 59 1 1295 180 0 0 0 chr6 93092363 93092383 -56424654 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1295 765 33 0 0 chr6 93093974 93094066 -56422971 + (TTC)n Simple_repeat Simple_repeat 1 92 0 1 1295 1219 35 7 0 chr6 93094077 93094221 -56422816 - B1_Mm SINE Alu -1 146 2 1 1295 471 18 0 0 chr6 93095197 93095253 -56421784 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1295 23 33 0 0 chr6 93095632 93095662 -56421375 + AT_rich Low_complexity Low_complexity 1 30 0 1 1295 343 273 29 36 chr6 93096250 93096387 -56420650 + MLT1A1 LTR MaLR 269 404 -4 1 1295 1833 150 115 12 chr6 93097315 93097460 -56419577 + ORR1B2 LTR MaLR 3 145 -222 1 1295 531 0 0 0 chr6 93097460 93097519 -56419518 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1295 1833 150 115 12 chr6 93097519 93097704 -56419333 + ORR1B2 LTR MaLR 146 365 -2 1 1295 703 266 72 5 chr6 93097749 93097957 -56419080 - ID_B1 SINE B4 -1 223 2 1 1295 228 163 20 0 chr6 93098346 93098395 -56418642 - MADE2 DNA Mariner 0 80 31 1 1295 4009 67 16 24 chr6 93098761 93099315 -56417722 - L1_Mus3 LINE L1 -3 6635 6086 1 1295 294 143 0 0 chr6 93099495 93099544 -56417493 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1295 339 217 0 0 chr6 93099938 93100044 -56416993 + GA-rich Low_complexity Low_complexity 1 106 0 1 1295 2286 53 14 0 chr6 93101361 93101645 -56415392 - L1Md_F2 LINE L1 -6 6576 6289 1 1295 246 95 0 0 chr6 93101757 93101799 -56415238 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1 1295 646 79 0 29 chr6 93101991 93102095 -56414942 + (CCCCCT)n Simple_repeat Simple_repeat 2 102 0 1 1295 801 74 0 0 chr6 93102095 93102217 -56414820 + (TTC)n Simple_repeat Simple_repeat 1 122 0 1 1295 200 341 0 66 chr6 93103335 93103426 -56413611 + MIRb SINE MIR 40 124 -144 1 1295 1378 216 79 21 chr6 93104818 93105197 -56411840 - MTD LTR MaLR -13 406 6 1 1295 231 310 45 11 chr6 93105205 93105293 -56411744 + LTR37B LTR ERV1 18 108 -360 1 1295 401 251 75 80 chr6 93105314 93105513 -56411524 - MER3 DNA MER1_type -5 204 7 1 1295 21 57 0 0 chr6 93105734 93105769 -56411268 + AT_rich Low_complexity Low_complexity 1 35 0 1 1295 306 0 0 0 chr6 93105794 93105828 -56411209 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1295 792 299 10 19 chr6 93105876 93106081 -56410956 - Lx8 LINE L1 -135 7338 7136 1 1295 23 0 0 0 chr6 93106461 93106484 -56410553 + AT_rich Low_complexity Low_complexity 1 23 0 1 1295 334 370 0 0 chr6 93106578 93106705 -56410332 + MIRb SINE MIR 35 161 -107 1 1295 870 256 208 11 chr6 93107801 93108243 -56408794 + L1MB7 LINE L1 5640 6168 -16 1 1295 369 0 0 0 chr6 93110075 93110116 -56406921 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1295 422 307 19 105 chr6 93110600 93110866 -56406171 + L1M1 LINE L1 5548 5790 -510 1 1295 282 95 0 0 chr6 93110992 93111034 -56406003 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1295 342 0 0 0 chr6 93111034 93111071 -56405966 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1295 795 145 236 116 chr6 93111241 93111491 -56405546 + Lx4A LINE L1 6759 7038 -20 1 1295 609 14 0 0 chr6 93111491 93111561 -56405476 + (GGAAA)n Simple_repeat Simple_repeat 2 71 0 1 1295 1041 132 0 0 chr6 93111573 93111740 -56405297 + (GAAA)n Simple_repeat Simple_repeat 4 170 0 1 1295 403 211 0 31 chr6 93111960 93112087 -56404950 + (TATATG)n Simple_repeat Simple_repeat 2 124 0 1 1295 912 263 16 137 chr6 93112973 93113295 -56403742 + B4 SINE B4 10 292 0 1 1295 279 0 0 0 chr6 93113299 93113330 -56403707 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1295 848 264 136 21 chr6 93113436 93113524 -56403513 + B4A SINE B4 24 122 -170 1 1295 468 0 0 0 chr6 93113524 93113576 -56403461 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1295 848 264 136 21 chr6 93113576 93113723 -56403314 + B4A SINE B4 123 286 -6 1 1295 1273 205 128 39 chr6 93114128 93114463 -56402574 + Lx2B LINE L1 6634 6998 -2 1 1295 700 276 97 0 chr6 93114623 93114819 -56402218 - ID_B1 SINE B4 -2 222 8 1 1295 258 338 49 29 chr6 93115455 93115659 -56401378 - L1ME1 LINE L1 -63 6116 5909 1 1295 216 97 0 0 chr6 93116513 93116544 -56400493 + (CATG)n Simple_repeat Simple_repeat 4 34 0 1 1295 1012 134 7 39 chr6 93116703 93116858 -56400179 + B1_Mur4 SINE Alu 1 150 0 2 1295 208 308 9 36 chr6 93117690 93117801 -56399236 + CT-rich Low_complexity Low_complexity 2 109 0 2 1295 236 304 56 138 chr6 93118029 93118189 -56398848 - IAPLTR2a LTR ERVK -175 236 90 2 1295 248 353 143 34 chr6 93118458 93118871 -56398166 - L3 LINE CR1 -1121 3368 2911 2 1295 1025 251 19 0 chr6 93119106 93119321 -56397716 + ID_B1 SINE B4 4 222 -2 2 1295 297 296 178 31 chr6 93119387 93119516 -56397521 + RSINE1 SINE B4 4 151 -14 2 1295 1889 125 113 39 chr6 93120049 93120234 -56396803 - RMER17C LTR ERVK 0 410 212 2 1295 504 59 0 0 chr6 93120234 93120302 -56396735 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 1295 1889 125 113 39 chr6 93120302 93120498 -56396539 - RMER17C LTR ERVK -199 211 1 2 1295 341 313 50 0 chr6 93120671 93120770 -56396267 - Tigger9b DNA MER2_type -1 623 520 2 1295 279 330 50 25 chr6 93120678 93120799 -56396238 - Tigger9a DNA Tigger -8 724 601 2 1295 432 281 45 106 chr6 93120819 93121018 -56396019 + MER20 DNA MER1_type 31 217 -2 2 1295 922 328 96 28 chr6 93121018 93121312 -56395725 - Tigger9b DNA MER2_type -95 529 222 2 1295 369 43 0 0 chr6 93121312 93121359 -56395678 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 2 1295 922 328 96 28 chr6 93121359 93121556 -56395481 - Tigger9b DNA MER2_type -403 221 5 2 1295 290 266 26 44 chr6 93121777 93121891 -56395146 + L1MC5 LINE L1 7723 7834 -127 2 1295 436 285 67 39 chr6 93123083 93123262 -56393775 - MER2 DNA MER2_type -101 244 61 2 1295 324 0 0 0 chr6 93123300 93123336 -56393701 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1295 582 28 0 0 chr6 93123336 93123407 -56393630 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1295 695 144 8 0 chr6 93124027 93124152 -56392885 + CT-rich Low_complexity Low_complexity 1 126 0 2 1295 468 35 0 0 chr6 93125454 93125512 -56391525 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1295 406 364 48 52 chr6 93125533 93125615 -56391422 - B4A SINE B4 -2 290 210 2 1295 1029 198 292 28 chr6 93125615 93125906 -56391131 + ORR1D2 LTR MaLR 3 370 0 2 1295 406 364 48 52 chr6 93125906 93126113 -56390924 - B4A SINE B4 -83 209 2 2 1295 337 345 53 44 chr6 93126206 93126412 -56390625 - MIRb SINE MIR -46 222 15 2 1295 193 294 43 86 chr6 93127654 93127747 -56389290 - MIR SINE MIR -112 150 62 2 1295 248 360 9 26 chr6 93128498 93128612 -56388425 + PB1 SINE Alu 14 125 -2 2 1295 22 0 0 0 chr6 93128878 93128900 -56388137 + AT_rich Low_complexity Low_complexity 1 22 0 2 1295 230 217 0 0 chr6 93128926 93128958 -56388079 + polypyrimidine Low_complexity Low_complexity 17 48 0 2 1295 1359 67 0 0 chr6 93128958 93129137 -56387900 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 1295 230 217 0 0 chr6 93129137 93129150 -56387887 + polypyrimidine Low_complexity Low_complexity 4 16 0 2 1295 458 308 19 0 chr6 93129261 93129368 -56387669 + MER58A DNA MER1_type 5 113 -111 2 1295 196 293 16 49 chr6 93129587 93129648 -56387389 + MER5A DNA MER1_type 48 106 -83 2 1295 276 338 39 0 chr6 93129672 93129749 -56387288 + ID4_ SINE ID 2 81 -2 2 1295 452 284 74 7 chr6 93130237 93130372 -56386665 + B1F SINE Alu 1 144 -5 2 1295 228 67 0 0 chr6 93130376 93130406 -56386631 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2 1295 185 286 129 48 chr6 93130649 93130796 -56386241 + MIRb SINE MIR 63 221 -47 2 1295 1131 35 0 0 chr6 93131105 93131249 -56385788 + (TC)n Simple_repeat Simple_repeat 1 144 0 2 1295 199 271 207 36 chr6 93131572 93131612 -56385425 - L2b LINE L2 -34 3392 3331 2 1295 432 0 0 0 chr6 93131612 93131660 -56385377 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1295 236 276 133 73 chr6 93131660 93131811 -56385226 - L2b LINE L2 -96 3330 3137 2 1295 391 285 121 27 chr6 93131939 93132195 -56384842 + Lx8 LINE L1 7193 7472 -1 2 1295 490 324 75 24 chr6 93132813 93133025 -56384012 + B4A SINE B4 66 288 -4 2 1295 238 275 8 48 chr6 93133027 93133153 -56383884 + (CA)n Simple_repeat Simple_repeat 2 122 0 2 1295 306 289 35 37 chr6 93133585 93133743 -56383294 - MER112 DNA MER1_type -102 159 3 2 1295 215 336 90 45 chr6 93134576 93134732 -56382305 + MIRb SINE MIR 106 268 0 2 1295 800 141 28 0 chr6 93135137 93135279 -56381758 + URR1A DNA MER1_type 81 226 0 2 1295 324 273 0 0 chr6 93135687 93135830 -56381207 + (CATA)n Simple_repeat Simple_repeat 2 144 0 2 1295 207 0 0 0 chr6 93135830 93135853 -56381184 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1295 269 185 0 15 chr6 93136486 93136552 -56380485 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1295 289 365 37 81 chr6 93136776 93136937 -56380100 + RSINE1 SINE B4 3 156 -9 2 1295 464 111 0 12 chr6 93136941 93137023 -56380014 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1295 270 230 121 26 chr6 93137102 93137218 -56379819 - Lx8 LINE L1 -3 7470 7344 2 1295 261 83 0 0 chr6 93137224 93137260 -56379777 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1295 4554 287 72 20 chr6 93137355 93137813 -56379224 - Lx7 LINE L1 -496 7200 6709 2 1295 513 0 0 0 chr6 93137813 93137870 -56379167 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 2 1295 4554 287 72 20 chr6 93137870 93138941 -56378096 - Lx7 LINE L1 -988 6708 5592 2 1295 237 240 187 28 chr6 93139783 93139890 -56377147 - Lx9 LINE L1 -597 7047 6924 2 1295 507 107 0 0 chr6 93139899 93139974 -56377063 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 2 1295 486 196 0 0 chr6 93139953 93140055 -56376982 + CT-rich Low_complexity Low_complexity 1 102 0 2 1295 1080 45 0 0 chr6 93140055 93140187 -56376850 - B1_Mus1 SINE Alu -7 141 10 2 1295 1029 254 132 16 chr6 93140195 93140598 -56376439 - Lx9 LINE L1 -735 6909 6316 2 1295 355 309 97 82 chr6 93140877 93141011 -56376026 + PB1 SINE Alu 4 139 -10 2 1295 314 219 158 0 chr6 93141066 93141148 -56375889 + MER57F LTR ERV1 1 95 -341 2 1295 300 254 0 0 chr6 93141176 93141235 -56375802 - tRNA-Ala-GCY_ tRNA tRNA -15 60 2 2 1295 1338 194 94 15 chr6 93141242 93141572 -56375465 + MER57F LTR ERV1 81 436 0 2 1295 2211 123 9 50 chr6 93141942 93142285 -56374752 + ORR1A4 LTR MaLR 1 329 0 2 1295 290 319 70 29 chr6 93142380 93142551 -56374486 - MIRb SINE MIR 0 268 91 2 1295 214 239 0 21 chr6 93142628 93142675 -56374362 + RSINE1 SINE B4 2 47 -118 2 1295 228 163 0 0 chr6 93142978 93143021 -56374016 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2 1295 235 0 0 54 chr6 93144301 93144338 -56372699 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1295 556 294 89 60 chr6 93144375 93144610 -56372427 + B4 SINE B4 16 257 -35 2 1295 2836 23 9 6 chr6 93145458 93145808 -56371229 - MT-int LTR MaLR -73 1025 675 2 1295 215 103 26 0 chr6 93146814 93146853 -56370184 + (TTA)n Simple_repeat Simple_repeat 3 42 0 2 1295 291 232 174 0 chr6 93146861 93146930 -56370107 - B1F SINE Alu -51 98 18 2 1295 361 321 23 30 chr6 93147191 93147372 -56369665 - LTR16C LTR ERVL 0 568 366 2 1295 183 222 0 0 chr6 93148497 93148542 -56368495 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 2 1295 328 241 105 35 chr6 93148546 93148632 -56368405 - B4 SINE B4 0 292 201 2 1295 651 210 11 6 chr6 93150550 93150727 -56366310 + CT-rich Low_complexity Low_complexity 1 178 0 2 1295 213 329 14 0 chr6 93150739 93150809 -56366228 + CT-rich Low_complexity Low_complexity 4 74 0 2 1295 207 219 0 0 chr6 93151163 93151204 -56365833 + T-rich Low_complexity Low_complexity 1 41 0 2 1295 239 346 38 15 chr6 93151784 93151916 -56365121 + MIRc SINE MIR 89 223 -45 2 1295 391 350 8 31 chr6 93152360 93152487 -56364550 - RSINE1 SINE B4 -19 146 23 2 1295 1348 164 14 9 chr6 93152816 93153038 -56363999 + URR1B DNA MER1_type 3 225 0 2 1295 394 272 147 6 chr6 93153182 93153345 -56363692 - Lx8 LINE L1 -146 7327 7142 2 1295 2501 262 47 18 chr6 93153350 93153884 -56363153 - L1_Mur3 LINE L1 -693 5187 4645 2 1295 1929 156 15 168 chr6 93153884 93154354 -56362683 + RMER10B LTR ERVL 1 398 0 2 1295 2501 262 47 18 chr6 93154354 93154607 -56362430 - L1_Mur3 LINE L1 -1236 4644 4377 2 1295 300 189 62 8 chr6 93154616 93154744 -56362293 + (TA)n Simple_repeat Simple_repeat 1 135 0 2 1295 2851 252 32 20 chr6 93154756 93155597 -56361440 - L1_Mur3 LINE L1 -2953 2927 2077 2 1295 442 236 85 54 chr6 93155685 93155815 -56361222 + B4A SINE B4 113 246 -46 2 1295 1613 226 30 3 chr6 93155824 93156157 -56360880 + MTC LTR MaLR 1 342 -79 2 1295 393 21 0 0 chr6 93156170 93156187 -56360850 + (TTC)n Simple_repeat Simple_repeat 1 17 0 2 1295 1476 34 0 0 chr6 93156187 93156365 -56360672 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 2 1295 393 21 0 0 chr6 93156365 93156395 -56360642 + (TTC)n Simple_repeat Simple_repeat 1 30 0 2 1295 217 258 0 139 chr6 93156455 93156527 -56360510 - B2_Mm2 SINE B2 -71 124 63 2 1295 1132 261 56 8 chr6 93156527 93156902 -56360135 - L1_Mur3 LINE L1 -3885 1995 1603 2 1295 291 268 0 14 chr6 93157043 93157115 -56359922 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1295 382 316 162 39 chr6 93157115 93157319 -56359718 - B4 SINE B4 0 292 64 2 1295 940 270 5 0 chr6 93157330 93157534 -56359503 + B3 SINE B2 4 208 -8 2 1295 184 253 121 48 chr6 93157858 93157941 -56359096 - MIRc SINE MIR -133 135 47 2 1295 247 214 0 103 chr6 93159064 93159142 -56357895 + MER77 LTR ERVL 22 91 -516 2 1295 420 219 273 27 chr6 93159149 93159299 -56357738 + Lx2B LINE L1 6812 6998 -2 2 1295 192 331 38 61 chr6 93159447 93159579 -56357458 + MIRb SINE MIR 82 210 -58 2 1295 24 53 0 0 chr6 93159814 93159852 -56357185 + AT_rich Low_complexity Low_complexity 1 38 0 2 1295 333 0 0 0 chr6 93160100 93160137 -56356900 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1295 352 273 152 11 chr6 93160160 93160338 -56356699 + Lx8 LINE L1 6087 6289 -1184 2 1295 250 300 14 0 chr6 93160588 93160658 -56356379 - ID4_ SINE ID -12 71 1 2 1295 292 289 26 0 chr6 93160676 93160752 -56356285 - ID2 SINE ID 0 83 6 2 1295 954 157 0 0 chr6 93161035 93161188 -56355849 + URR1B DNA MER1_type 73 225 0 2 1295 1045 302 39 15 chr6 93161188 93161501 -56355536 + MTE2b LTR MaLR 49 369 -10 2 1295 245 248 199 0 chr6 93161571 93161633 -56355404 - RCHARR1 DNA MER1_type -2 972 896 2 1295 249 33 0 0 chr6 93161633 93161663 -56355374 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1295 1310 234 251 30 chr6 93161663 93162090 -56354947 - RCHARR1 DNA MER1_type -79 895 377 2 1295 251 285 16 89 chr6 93162089 93162347 -56354690 - RMER17A LTR ERVK -266 485 247 3 1295 208 72 23 45 chr6 93162352 93162396 -56354641 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 3 1295 804 114 0 0 chr6 93162428 93162577 -56354460 + (TC)n Simple_repeat Simple_repeat 2 150 0 3 1295 263 257 94 110 chr6 93162639 93162766 -56354271 - MTEa LTR MaLR -249 130 6 3 1295 336 48 0 0 chr6 93165110 93165152 -56351885 + (TTCTC)n Simple_repeat Simple_repeat 4 45 0 3 1295 515 352 46 31 chr6 93165374 93165723 -56351314 + ORR1E LTR MaLR 3 356 -3 3 1295 1215 137 89 42 chr6 93165822 93166035 -56351002 - URR1B DNA MER1_type -2 223 1 3 1295 265 274 89 76 chr6 93166980 93167138 -56349899 - MER33 DNA MER1_type -46 278 119 3 1295 400 286 71 0 chr6 93167347 93167459 -56349578 - MER33 DNA MER1_type -204 120 1 3 1295 180 0 0 0 chr6 93167936 93167956 -56349081 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1295 610 330 146 31 chr6 93169128 93169616 -56347421 - MLT1F2 LTR MaLR -16 544 1 3 1295 2196 150 25 5 chr6 93170151 93170519 -56346518 - MTC LTR MaLR 0 421 47 3 1295 658 189 13 13 chr6 93170521 93170676 -56346361 + CT-rich Low_complexity Low_complexity 4 158 0 3 1295 208 107 0 0 chr6 93170676 93170704 -56346333 + (TTTC)n Simple_repeat Simple_repeat 4 31 0 3 1295 713 196 87 0 chr6 93170704 93170842 -56346195 - B1_Mur4 SINE Alu 0 150 1 3 1295 380 171 66 0 chr6 93170843 93170919 -56346118 - MTC LTR MaLR -340 81 1 3 1295 216 0 0 0 chr6 93172293 93172317 -56344720 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3 1295 317 64 39 78 chr6 93172593 93172695 -56344342 + T-rich Low_complexity Low_complexity 3 100 0 3 1295 411 243 44 119 chr6 93172696 93172855 -56344182 - B1_Mur1 SINE Alu 0 149 3 3 1295 219 264 126 45 chr6 93173506 93173617 -56343420 + MIRb SINE MIR 76 195 -67 3 1295 202 260 0 0 chr6 93174443 93174493 -56342544 - MIR3 SINE MIR -3 205 156 3 1295 242 254 0 0 chr6 93175148 93175211 -56341826 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1295 821 287 66 15 chr6 93175223 93175495 -56341542 - B4A SINE B4 -2 290 5 3 1295 794 195 178 14 chr6 93176399 93176599 -56340438 - B3 SINE B2 0 216 6 3 1295 300 53 0 0 chr6 93176751 93176789 -56340248 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1295 320 333 94 39 chr6 93178160 93178394 -56338643 - MIRb SINE MIR -19 249 3 3 1295 5441 47 1 1 chr6 93178482 93179143 -56337894 - L1Md_F2 LINE L1 0 6582 5922 3 1295 410 53 18 0 chr6 93180239 93180296 -56336741 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1295 1034 144 0 6 chr6 93180796 93180946 -56336091 + (TC)n Simple_repeat Simple_repeat 1 150 0 3 1295 1326 34 11 17 chr6 93180946 93181127 -56335910 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 1295 1034 144 0 6 chr6 93181127 93181157 -56335880 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1295 672 205 237 20 chr6 93181667 93181972 -56335065 + MTEa LTR MaLR 1 371 -8 3 1295 777 174 0 0 chr6 93184090 93184436 -56332601 + (CA)n Simple_repeat Simple_repeat 1 346 0 3 1295 227 222 0 0 chr6 93186594 93186639 -56330398 + T-rich Low_complexity Low_complexity 1 45 0 3 1295 1173 54 0 39 chr6 93186803 93186956 -56330081 + B1_Mm SINE Alu 1 147 0 3 1295 213 39 0 0 chr6 93186956 93186982 -56330055 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1295 533 315 75 31 chr6 93187201 93187427 -56329610 - B4A SINE B4 -55 237 2 3 1295 584 214 236 6 chr6 93189040 93189214 -56327823 - B3 SINE B2 -1 215 2 3 1295 840 269 36 25 chr6 93189422 93189700 -56327337 + B4 SINE B4 2 282 -10 3 1295 195 42 0 0 chr6 93190358 93190382 -56326655 + (TCC)n Simple_repeat Simple_repeat 3 26 0 3 1295 1316 206 186 49 chr6 93191156 93191625 -56325412 + MT2A LTR ERVL 1 533 0 3 1295 205 365 0 36 chr6 93191643 93191754 -56325283 + GA-rich Low_complexity Low_complexity 1 107 0 3 161 795 265 62 16 chr6 93192101 93192472 -56324565 - L1M4b LINE L1 -3681 3653 3422 3 1296 3765 264 75 21 chr6 93192464 93193571 -56323466 - Lx8 LINE L1 0 7473 6307 3 1296 293 342 105 23 chr6 93193612 93193917 -56323120 - L1M4b LINE L1 -4385 2949 2620 3 1296 310 248 85 9 chr6 93193967 93194073 -56322964 - L1MB5 LINE L1 -1 6173 6060 3 1296 751 285 92 25 chr6 93194104 93194496 -56322541 - L1MB5 LINE L1 -164 6010 5593 3 1296 3965 273 44 59 chr6 93194495 93195802 -56321235 - Lx8 LINE L1 0 7473 6187 3 1296 1571 301 54 38 chr6 93195829 93196682 -56320355 + L1M2 LINE L1 4299 5165 -978 3 1296 233 339 51 0 chr6 93197630 93197748 -56319289 - MIRb SINE MIR -74 194 71 3 1296 410 288 51 25 chr6 93197852 93198048 -56318989 + MER3 DNA MER1_type 1 201 -8 3 1296 865 261 15 117 chr6 93198706 93199031 -56318006 + B4A SINE B4 1 292 0 3 1296 617 306 48 54 chr6 93199100 93199394 -56317643 + B4A SINE B4 1 292 0 3 1296 1625 154 70 64 chr6 93199409 93199736 -56317301 + ORR1A4 LTR MaLR 1 329 0 3 1296 10037 136 32 141 chr6 93199736 93201939 -56315098 + ORR1A4-int LTR MaLR 1 1963 0 3 1296 1739 135 38 53 chr6 93201953 93202273 -56314764 + ORR1A4 LTR MaLR 7 321 -8 3 1296 582 86 0 0 chr6 93203111 93203192 -56313845 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 3 1296 561 254 48 155 chr6 93205474 93205619 -56311418 + B4 SINE B4 1 224 -67 3 1296 655 105 9 9 chr6 93205619 93205725 -56311312 + B1_Mur4 SINE Alu 43 148 -2 3 1296 490 268 57 0 chr6 93205756 93205879 -56311158 - B3A SINE B2 -68 130 1 3 1296 468 358 64 32 chr6 93206719 93207062 -56309975 - ORR1E LTR MaLR -5 354 1 3 1296 539 283 117 38 chr6 93207180 93207470 -56309567 + MLT1K LTR MaLR 266 578 -17 3 1296 904 279 89 19 chr6 93208419 93208689 -56308348 - B4 SINE B4 -2 290 2 3 1296 219 36 0 0 chr6 93209100 93209128 -56307909 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1296 2971 197 66 25 chr6 93209160 93209838 -56307199 - Lx9 LINE L1 -1 7643 6938 3 1296 470 156 0 49 chr6 93209844 93209925 -56307112 + Lx9 LINE L1 6457 6533 -1111 3 1296 1589 204 20 6 chr6 93209925 93210270 -56306767 - ORR1D1 LTR MaLR 0 374 25 3 1296 6226 197 57 14 chr6 93210275 93211588 -56305449 - ORR1D1-int LTR MaLR 0 1370 1 3 1296 1009 231 24 28 chr6 93211588 93211842 -56305195 - ORR1D1 LTR MaLR 0 374 122 3 1296 991 172 11 0 chr6 93211887 93212073 -56304964 + ORR1D1 LTR MaLR 1 188 -186 3 1296 252 0 0 0 chr6 93212264 93212292 -56304745 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1296 559 302 57 23 chr6 93213423 93213687 -56303350 + B4A SINE B4 2 274 -18 3 1296 251 351 74 7 chr6 93214462 93214597 -56302440 - MER5B DNA MER1_type -8 170 27 3 1296 559 279 44 0 chr6 93214695 93214853 -56302184 - B4 SINE B4 0 292 128 3 1296 2160 149 13 98 chr6 93215898 93216002 -56301035 - MTC LTR MaLR 0 421 323 3 1296 889 233 330 3 chr6 93216002 93216299 -56300738 + ORR1B1 LTR MaLR 1 394 0 3 1296 2160 149 13 98 chr6 93216299 93216654 -56300383 - MTC LTR MaLR -99 322 1 3 1296 497 299 20 14 chr6 93217388 93217534 -56299503 + B4 SINE B4 20 166 -126 3 1296 251 275 43 0 chr6 93217788 93217857 -56299180 + MLT1H LTR MaLR 119 190 -359 3 1296 1461 202 105 19 chr6 93217893 93218266 -56298771 + MTD LTR MaLR 1 405 -14 3 1296 243 318 114 60 chr6 93219260 93219558 -56297479 - ORR1D2 LTR MaLR -56 314 1 3 1296 459 0 0 0 chr6 93219571 93219622 -56297415 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 3 1296 1264 31 0 0 chr6 93219622 93219781 -56297256 - B2_Mm1a SINE B2 -33 160 2 3 1296 307 236 32 221 chr6 93220533 93220691 -56296346 + B4 SINE B4 165 292 0 3 1296 200 200 0 0 chr6 93220705 93220750 -56296287 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1296 198 0 0 0 chr6 93224741 93224763 -56292274 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 3 1296 354 260 115 0 chr6 93224929 93225025 -56292012 + PB1D9 SINE Alu 3 109 -11 3 1296 186 43 0 0 chr6 93225051 93225074 -56291963 + (TGGA)n Simple_repeat Simple_repeat 4 26 0 3 1296 418 247 12 0 chr6 93225637 93225718 -56291319 + ID4 SINE ID 1 82 -1 3 1296 254 286 33 11 chr6 93225858 93225950 -56291087 + GA-rich Low_complexity Low_complexity 2 95 0 3 1296 1203 75 0 0 chr6 93225980 93226126 -56290911 - B1_Mus1 SINE Alu 0 148 3 3 1296 198 330 120 11 chr6 93227058 93227150 -56289887 + MIRb SINE MIR 56 157 -111 3 1296 4132 35 2 0 chr6 93227499 93227983 -56289054 + L1Md_F3 LINE L1 6079 6563 -21 3 1296 378 0 0 0 chr6 93227983 93228025 -56289012 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1296 978 34 0 0 chr6 93228843 93228961 -56288076 + (GGAA)n Simple_repeat Simple_repeat 4 121 0 3 1296 1044 138 37 42 chr6 93228965 93229154 -56287883 + B2_Mm2 SINE B2 8 195 0 3 1296 216 67 0 0 chr6 93229154 93229184 -56287853 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 3 1296 194 318 30 15 chr6 93229811 93229878 -56287159 + MIR SINE MIR 34 101 -161 3 1296 396 305 117 17 chr6 93230089 93230379 -56286658 - L1MB4 LINE L1 -2 6178 5860 3 1296 285 324 66 74 chr6 93230428 93230671 -56286366 - ORR1E LTR MaLR -110 249 9 3 1296 444 269 132 15 chr6 93230674 93230810 -56286227 - MER20 DNA MER1_type -21 198 47 3 1296 459 0 0 0 chr6 93231309 93231360 -56285677 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1296 204 250 39 13 chr6 93231540 93231617 -56285420 + GA-rich Low_complexity Low_complexity 2 80 0 3 1296 678 230 7 21 chr6 93231772 93231914 -56285123 - B1_Mur1 SINE Alu -5 144 5 3 1296 228 284 11 64 chr6 93232215 93232309 -56284728 - B3 SINE B2 -7 209 121 3 1296 463 252 137 91 chr6 93232271 93232446 -56284591 - B4A SINE B4 -4 288 106 3 1296 1255 106 0 6 chr6 93232579 93232760 -56284277 - B2_Mm2 SINE B2 -2 193 14 3 1296 1907 281 88 36 chr6 93232808 93233588 -56283449 - Lx9 LINE L1 -40 7604 6784 3 1296 345 314 14 21 chr6 93233788 93233931 -56283106 - Lx9 LINE L1 -1655 5989 5848 3 1296 2071 114 55 61 chr6 93234141 93234469 -56282568 - ORR1A3 LTR MaLR 0 326 1 3 1296 203 316 22 140 chr6 93235080 93235216 -56281821 + L2 LINE L2 2744 2863 -556 4 1296 227 318 81 9 chr6 93236675 93236786 -56280251 + MIR SINE MIR 118 236 -26 4 1296 317 340 36 35 chr6 93236802 93236982 -56280055 + L1M5 LINE L1 5512 5693 -480 4 1296 377 354 80 46 chr6 93237191 93237475 -56279562 - MLT1J1 LTR MaLR -139 309 33 4 1296 262 307 77 29 chr6 93237652 93237756 -56279281 - LTR16A LTR ERVL -106 345 237 4 1296 435 19 0 0 chr6 93238219 93238271 -56278766 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1296 438 20 0 0 chr6 93238271 93238321 -56278716 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1296 21 0 0 0 chr6 93239633 93239654 -56277383 + AT_rich Low_complexity Low_complexity 1 21 0 4 1296 256 132 0 0 chr6 93240885 93240923 -56276114 + L1M5 LINE L1 4944 4981 -1165 4 1296 428 162 100 0 chr6 93241088 93241168 -56275869 + B3 SINE B2 5 92 -124 4 1296 379 272 69 124 chr6 93241168 93241306 -56275731 + B4A SINE B4 5 210 -82 4 1296 2345 262 55 126 chr6 93241356 93242180 -56274857 - L1_Mur3 LINE L1 -1536 4344 3647 4 1296 396 0 0 0 chr6 93242180 93242224 -56274813 + (CTTG)n Simple_repeat Simple_repeat 3 46 0 4 1296 2345 262 55 126 chr6 93242224 93242752 -56274285 - L1_Mur3 LINE L1 -2234 3646 3089 4 1296 707 144 0 8 chr6 93242760 93242886 -56274151 + (TA)n Simple_repeat Simple_repeat 2 126 0 4 1296 2610 303 57 67 chr6 93242911 93244113 -56272924 + Lx8 LINE L1 6284 7473 0 4 1296 411 83 0 0 chr6 93244115 93244175 -56272862 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1296 279 0 0 0 chr6 93244446 93244477 -56272560 + (TTAG)n Simple_repeat Simple_repeat 2 32 0 4 1296 710 214 23 8 chr6 93244479 93244611 -56272426 - B1_Mur1 SINE Alu -9 140 7 4 1296 669 25 0 0 chr6 93246903 93246982 -56270055 + (GGA)n Simple_repeat Simple_repeat 3 81 0 4 1296 207 0 0 0 chr6 93247869 93247892 -56269145 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1296 429 20 0 0 chr6 93248950 93249000 -56268037 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1296 207 139 0 0 chr6 93249033 93249069 -56267968 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1296 310 297 130 19 chr6 93249786 93249947 -56267090 - MER20 DNA MER1_type 0 219 41 4 1296 203 344 0 0 chr6 93250127 93250188 -56266849 + GA-rich Low_complexity Low_complexity 2 62 0 4 1296 424 288 151 5 chr6 93251231 93251416 -56265621 - Tigger7 DNA MER2_type -2043 448 237 4 1296 276 40 60 0 chr6 93252055 93252105 -56264932 + (CAA)n Simple_repeat Simple_repeat 2 54 0 4 1296 301 16 63 32 chr6 93255061 93255124 -56261913 + (TTTTG)n Simple_repeat Simple_repeat 1 65 0 4 1296 257 355 48 8 chr6 93255739 93255864 -56261173 + RSINE1 SINE B4 3 132 -33 4 1296 181 304 89 73 chr6 93257127 93257251 -56259786 + L2c LINE L2 3262 3387 0 4 1296 187 125 75 0 chr6 93257486 93257526 -56259511 - MIRm SINE MIR -15 261 219 4 1296 397 281 121 67 chr6 93257737 93257977 -56259060 - ORR1E LTR MaLR -43 316 64 4 1296 6212 82 10 1 chr6 93258118 93259268 -56257769 + L1_Mus2 LINE L1 5011 6171 -395 4 1296 460 339 178 17 chr6 93259340 93260048 -56256989 - L2 LINE L2 -557 2862 2041 4 1296 194 391 0 52 chr6 93260614 93260749 -56256288 + MIRb SINE MIR 34 161 -107 4 1296 580 167 372 0 chr6 93260765 93260921 -56256116 + B3 SINE B2 3 216 0 4 1296 213 246 0 0 chr6 93261121 93261186 -56255851 + GA-rich Low_complexity Low_complexity 2 66 0 4 1296 1492 122 52 8 chr6 93261327 93261576 -56255461 + ORR1A4 LTR MaLR 1 260 -69 4 1296 288 0 0 0 chr6 93261576 93261608 -56255429 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 4 1296 7254 113 13 15 chr6 93261611 93263053 -56253984 - Lx LINE L1 -29 6625 5184 4 1296 3608 62 12 0 chr6 93263049 93263530 -56253507 + MusHAL1 LINE L1 1745 2231 -481 4 1296 451 156 10 5 chr6 93263530 93263612 -56253425 + ORR1A4 LTR MaLR 259 374 0 4 1296 375 295 0 0 chr6 93265025 93265103 -56251934 - ID4_ SINE ID -2 81 4 4 1296 753 305 100 0 chr6 93265269 93265528 -56251509 - B4 SINE B4 -4 288 4 4 1296 192 248 103 60 chr6 93265798 93265914 -56251123 - MIR SINE MIR -11 251 131 4 1296 489 329 7 7 chr6 93265954 93266095 -56250942 - ID_B1 SINE B4 -3 221 81 4 1296 903 256 15 164 chr6 93266884 93267225 -56249812 - B4A SINE B4 -2 290 1 4 1296 750 247 7 7 chr6 93268227 93268374 -56248663 + B1_Mur1 SINE Alu 3 149 0 4 1296 369 162 0 0 chr6 93268754 93268822 -56248215 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1296 796 262 26 32 chr6 93271617 93271939 -56245098 + MER47B DNA MER2_type 20 413 -5 4 1296 318 292 69 40 chr6 93271993 93272260 -56244777 + Tigger9b DNA MER2_type 209 508 -116 4 1296 287 359 42 42 chr6 93272455 93272621 -56244416 - MIRb SINE MIR -56 212 47 4 1296 1012 285 17 53 chr6 93272852 93273152 -56243885 - B4 SINE B4 -1 291 3 4 1296 223 379 0 57 chr6 93273248 93273371 -56243666 + L2b LINE L2 3246 3361 -14 4 1296 224 315 67 0 chr6 93274410 93274499 -56242538 - MIR SINE MIR -69 193 99 4 1296 396 329 42 39 chr6 93274500 93274835 -56242202 + Lx8 LINE L1 7135 7470 -3 4 1296 303 260 82 10 chr6 93274865 93274962 -56242075 - B1_Mus1 SINE Alu -37 111 8 4 1296 613 249 84 12 chr6 93274965 93275132 -56241905 - L1M4b LINE L1 -7145 189 11 4 1296 269 345 40 110 chr6 93275291 93275475 -56241562 + L2a LINE L2 3210 3423 -3 4 1296 730 320 71 21 chr6 93275662 93275988 -56241049 - MLT1D LTR MaLR -3 502 161 4 1296 4545 174 86 8 chr6 93276351 93277181 -56239856 + RMER19B LTR ERVK 3 896 -6 4 1296 201 158 0 0 chr6 93278714 93278752 -56238285 + A-rich Low_complexity Low_complexity 1 38 0 4 1296 284 259 7 17 chr6 93279023 93279277 -56237760 + (CA)n Simple_repeat Simple_repeat 1 251 0 4 1296 267 136 0 0 chr6 93279316 93279375 -56237662 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 1296 192 158 0 0 chr6 93279384 93279422 -56237615 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 4 1296 276 289 0 0 chr6 93279450 93279585 -56237452 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 1296 971 248 90 19 chr6 93279587 93279899 -56237138 - Lx9 LINE L1 -237 7407 7074 4 1296 1416 219 45 113 chr6 93279898 93280480 -56236557 + L1_Rod LINE L1 4778 5319 -528 4 1296 969 196 93 28 chr6 93280487 93280702 -56236335 + L1_Rod LINE L1 5501 5729 -118 4 1296 2196 282 33 74 chr6 93280937 93281554 -56235483 + Lx9 LINE L1 6341 6932 -712 4 1296 895 162 13 7 chr6 93281554 93281703 -56235334 - B1_Mur4 SINE Alu 0 150 1 4 1296 2196 282 33 74 chr6 93281703 93281816 -56235221 + Lx9 LINE L1 6933 7041 -603 4 1296 2500 200 203 28 chr6 93281918 93281967 -56235070 - RMER1B Other Other -2 1064 1016 4 1296 3644 33 2 0 chr6 93281967 93282362 -56234675 + MTA_Mm LTR MaLR 1 396 0 4 1296 9068 32 52 0 chr6 93282362 93283406 -56233631 + MTA_Mm-int LTR MaLR 1 1098 0 4 1296 3463 34 26 3 chr6 93283406 93283793 -56233244 + MTA_Mm LTR MaLR 1 396 0 4 1296 2500 214 140 61 chr6 93283793 93285085 -56231952 - RMER1B Other Other -51 1015 19 4 1296 5284 115 24 14 chr6 93285722 93286176 -56230861 + L1Md_F2 LINE L1 4784 5234 -649 4 1296 180 0 0 0 chr6 93286176 93286196 -56230841 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1296 5284 115 24 14 chr6 93286196 93286536 -56230501 + L1Md_F2 LINE L1 5235 5585 -298 4 1296 7706 84 5 10 chr6 93286537 93287526 -56229511 + L1Md_F2 LINE L1 5588 6571 -11 4 1296 5805 87 96 1 chr6 93287514 93288298 -56228739 + L1_Mus3 LINE L1 5780 6637 -1 4 1296 22 35 0 0 chr6 93288418 93288447 -56228590 + AT_rich Low_complexity Low_complexity 1 29 0 4 1296 534 31 0 0 chr6 93288447 93288511 -56228526 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1296 571 317 115 48 chr6 93288514 93288766 -56228271 - B4A SINE B4 -16 276 8 4 1296 270 0 0 0 chr6 93289923 93289953 -56227084 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4 1296 243 0 0 0 chr6 93291185 93291212 -56225825 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1296 915 264 108 23 chr6 93291859 93292165 -56224872 + MTEa LTR MaLR 48 379 0 4 1296 184 61 88 29 chr6 93292185 93292219 -56224818 - L2 LINE L2 -852 2567 2532 4 1296 323 248 134 92 chr6 93292356 93292498 -56224539 + MLT1J LTR MaLR 237 384 -128 4 1296 497 298 129 28 chr6 93292672 93292927 -56224110 + LTR16B2 LTR ERVL 126 406 -56 4 1296 582 15 0 0 chr6 93292954 93293021 -56224016 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 4 1296 257 279 154 13 chr6 93293381 93293537 -56223500 + Lx8 LINE L1 4155 4332 -1548 4 1296 1362 246 64 3 chr6 93293525 93293871 -56223166 + Lx8 LINE L1 5477 5843 -37 4 1296 2627 303 88 55 chr6 93293894 93294643 -56222394 + Lx8 LINE L1 6030 6826 -647 4 1296 269 86 0 0 chr6 93294643 93294678 -56222359 + U2 snRNA snRNA 1 35 -153 4 1296 2627 303 88 55 chr6 93294678 93295028 -56222009 + Lx8 LINE L1 6827 7201 -272 4 1296 608 196 0 22 chr6 93295033 93295216 -56221821 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 1296 886 257 35 41 chr6 93295327 93295728 -56221309 + L1MB8 LINE L1 5185 5588 -596 4 1296 964 267 70 33 chr6 93295748 93296019 -56221018 + B4A SINE B4 6 286 -6 4 1296 206 105 26 0 chr6 93296030 93296068 -56220969 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1296 285 288 5 0 chr6 93296069 93296165 -56220872 + L1MB8 LINE L1 5576 5673 -506 4 1296 432 288 36 12 chr6 93296165 93296330 -56220707 + L1MB8 LINE L1 5815 5983 -195 4 1296 180 0 0 0 chr6 93296714 93296734 -56220303 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1296 256 274 95 88 chr6 93297860 93298008 -56219029 + LTR85c LTR Gypsy? 454 602 -221 4 1296 1039 247 60 15 chr6 93299052 93299319 -56217718 + B4 SINE B4 5 283 -9 4 1296 288 0 0 0 chr6 93300834 93300866 -56216171 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1296 1279 61 0 0 chr6 93301702 93301849 -56215188 + B1_Mm SINE Alu 1 147 0 4 1296 224 71 48 0 chr6 93301849 93301891 -56215146 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1296 238 26 0 49 chr6 93303305 93303346 -56213691 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1296 1308 41 0 0 chr6 93303349 93303495 -56213542 - B1_Mm SINE Alu 0 147 2 4 1296 27 0 0 0 chr6 93303691 93303718 -56213319 + AT_rich Low_complexity Low_complexity 1 27 0 4 1296 32 57 0 0 chr6 93304229 93304282 -56212755 + AT_rich Low_complexity Low_complexity 1 53 0 4 1296 378 204 0 0 chr6 93304478 93304566 -56212471 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1296 2793 147 118 61 chr6 93304906 93305450 -56211587 + RMER15 LTR ERVL 1 575 0 5 1296 655 310 76 65 chr6 93305819 93306174 -56210863 + ORR1E LTR MaLR 1 359 0 5 1296 297 319 59 109 chr6 93306267 93306328 -56210709 + MIRb SINE MIR 42 105 -163 5 1296 2661 165 5 12 chr6 93306328 93306752 -56210285 - MTC LTR MaLR 0 421 1 5 1296 297 319 59 109 chr6 93306752 93306929 -56210108 + MIRb SINE MIR 106 268 0 5 1296 751 190 35 0 chr6 93307591 93307733 -56209304 - B1F2 SINE Alu -2 147 1 5 1296 234 91 0 0 chr6 93309131 93309164 -56207873 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 5 1296 339 330 77 44 chr6 93309279 93309460 -56207577 - MIRb SINE MIR -40 228 42 5 1296 1443 55 16 0 chr6 93309624 93309807 -56207230 - L1Md_F2 LINE L1 -1 6581 6396 5 1296 741 316 31 59 chr6 93310766 93311052 -56205985 + B4 SINE B4 15 292 0 5 1296 214 297 62 62 chr6 93312548 93312645 -56204392 + MIRm SINE MIR 28 124 -152 5 1296 501 207 71 9 chr6 93313979 93314091 -56202946 - B3 SINE B2 -13 203 85 5 1296 510 184 11 5 chr6 93314359 93314471 -56202566 - B3 SINE B2 -83 115 1 5 1296 325 63 63 0 chr6 93314553 93314616 -56202421 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 5 1296 333 0 0 0 chr6 93314634 93314671 -56202366 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1296 579 266 8 15 chr6 93314755 93314885 -56202152 - B4A SINE B4 -123 169 41 5 1296 3638 63 0 7 chr6 93315257 93315705 -56201332 + L1_Mus4 LINE L1 6191 6635 -1 5 1296 270 0 0 0 chr6 93316560 93316590 -56200447 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1296 1143 115 21 37 chr6 93317195 93317385 -56199652 - Lx LINE L1 -8 6646 6460 5 1296 1966 94 4 0 chr6 93317386 93317661 -56199376 + Lx LINE L1 5845 6120 -534 5 1296 1272 148 43 46 chr6 93317790 93318260 -56198777 - MTB_Mm LTR MaLR 0 379 1 5 1296 1025 107 29 39 chr6 93318260 93318464 -56198573 - MTB_Mm-int LTR MaLR 0 1098 897 5 1296 460 304 119 62 chr6 93318606 93319446 -56197591 - L1MEc LINE L1 -4256 2766 1875 5 1296 333 289 131 48 chr6 93319503 93319732 -56197305 - L1MEc LINE L1 -5325 1803 1556 5 1296 280 250 72 10 chr6 93320038 93320135 -56196902 - L1MEc LINE L1 -6232 191 89 5 1296 1782 243 16 37 chr6 93320564 93320962 -56196075 + Lx9 LINE L1 7082 7477 -167 5 1296 489 34 0 0 chr6 93320962 93321021 -56196016 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1296 1782 243 16 37 chr6 93321021 93321131 -56195906 + Lx9 LINE L1 7478 7579 -65 5 1296 25 0 0 0 chr6 93321137 93321162 -56195875 + AT_rich Low_complexity Low_complexity 1 25 0 5 1296 180 0 0 0 chr6 93322051 93322071 -56194966 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 5 1296 249 146 0 0 chr6 93322164 93322212 -56194825 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1296 354 285 2 2 chr6 93322986 93323087 -56193950 + Lx8 LINE L1 6696 6802 -671 5 1296 207 0 0 0 chr6 93323130 93323153 -56193884 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1296 24 0 0 0 chr6 93323229 93323253 -56193784 + AT_rich Low_complexity Low_complexity 1 24 0 5 1297 252 306 18 44 chr6 93323373 93323486 -56193551 + HAL1 LINE L1 1559 1668 -839 5 1297 364 200 43 0 chr6 93324105 93324175 -56192862 + B1_Mur2 SINE Alu 46 118 -31 5 1297 430 339 0 0 chr6 93324443 93324573 -56192464 - B1F1 SINE Alu -8 141 12 5 1297 692 304 68 17 chr6 93324986 93325220 -56191817 + LTR82B Low_complexity ERVL 149 394 -436 5 1297 299 363 174 0 chr6 93325852 93326042 -56190995 - MIR SINE MIR -23 239 17 5 1297 34933 36 11 10 chr6 93326141 93331888 -56185149 + L1Md_Gf LINE L1 1 5017 -869 5 1297 225 183 46 77 chr6 93331888 93331953 -56185084 - RMER20A LTR ERVK -268 248 186 5 1297 34933 36 11 10 chr6 93331953 93332607 -56184430 + L1Md_Gf LINE L1 5018 5589 -297 5 1297 9595 5 0 0 chr6 93332607 93333603 -56183434 + L1Md_T LINE L1 5587 6582 0 5 1297 351 113 0 0 chr6 93333715 93333768 -56183269 + (A)n Simple_repeat Simple_repeat 1 53 0 5 1297 3838 30 5 0 chr6 93334712 93335146 -56181891 + RLTR10C LTR ERVK 1 436 0 5 1297 215 276 0 87 chr6 93335688 93335803 -56181234 + A-rich Low_complexity Low_complexity 3 107 0 5 1297 473 273 119 40 chr6 93336685 93336989 -56180048 + MTEb LTR MaLR 23 379 0 5 1297 798 283 19 19 chr6 93337071 93337280 -56179757 + B3 SINE B2 1 209 -7 5 1297 22 0 0 0 chr6 93337286 93337308 -56179729 + AT_rich Low_complexity Low_complexity 1 22 0 5 1297 497 279 57 6 chr6 93337320 93337479 -56179558 + B3A SINE B2 3 169 -29 5 1297 467 277 51 93 chr6 93337580 93337891 -56179146 + L1_Mur3 LINE L1 5193 5490 -390 5 1297 2335 175 0 5 chr6 93337892 93338311 -56178726 + MT2A LTR ERVL 1 417 -116 5 1297 450 0 0 0 chr6 93338329 93338379 -56178658 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1297 2533 152 5 53 chr6 93338411 93338829 -56178208 - Lx5 LINE L1 -438 6612 6215 5 1297 2404 202 34 0 chr6 93338831 93339267 -56177770 + Lx5 LINE L1 6600 7050 0 5 1297 618 264 154 30 chr6 93339296 93339417 -56177620 + L1MA7 LINE L1 5522 5636 -655 5 1297 279 0 0 0 chr6 93339417 93339448 -56177589 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1297 618 264 154 30 chr6 93339448 93339697 -56177340 + L1MA7 LINE L1 5637 5938 -353 5 1297 693 251 65 43 chr6 93340324 93340573 -56176464 - MTE2a LTR MaLR 0 370 125 5 1297 291 282 39 24 chr6 93341813 93341940 -56175097 + MER5A1 DNA MER1_type 15 143 -23 5 1297 23 0 0 0 chr6 93342929 93342952 -56174085 + AT_rich Low_complexity Low_complexity 1 23 0 5 1297 469 29 14 28 chr6 93343230 93343302 -56173735 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 5 1297 1995 108 55 32 chr6 93344029 93344430 -56172607 - RMER17C LTR ERVK 0 410 1 5 1297 1386 126 42 14 chr6 93347620 93347837 -56169200 - Lx2 LINE L1 0 6997 6775 5 1297 3628 102 0 2 chr6 93347832 93348322 -56168715 - Lx2 LINE L1 -349 6648 6160 5 1297 183 114 0 0 chr6 93348552 93348587 -56168450 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 5 1297 21 36 0 0 chr6 93349907 93349935 -56167102 + AT_rich Low_complexity Low_complexity 1 28 0 5 1297 1378 19 0 0 chr6 93349935 93350097 -56166940 - L1Md_A LINE L1 0 6582 6421 5 1297 391 248 62 27 chr6 93350651 93350763 -56166274 - B3 SINE B2 -4 212 97 5 1297 264 329 40 25 chr6 93351606 93351844 -56165193 - MIRc SINE MIR -15 253 8 5 1297 654 256 112 43 chr6 93352333 93352655 -56164382 + ORR1E LTR MaLR 1 344 -15 5 1297 272 349 107 28 chr6 93353523 93353738 -56163299 - MIR SINE MIR -26 236 5 5 1297 1655 218 196 34 chr6 93353791 93354286 -56162751 - RMER15 LTR ERVL 0 575 1 5 1297 385 219 71 62 chr6 93354650 93354762 -56162275 - PB1D7 SINE Alu -5 115 3 5 1297 814 271 26 21 chr6 93354914 93355148 -56161889 - Lx8 LINE L1 -237 7236 7002 5 1297 198 0 0 0 chr6 93355201 93355223 -56161814 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1297 324 0 0 0 chr6 93355223 93355259 -56161778 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1297 444 307 133 19 chr6 93356091 93356347 -56160690 - MLT1J LTR MaLR -29 483 199 5 1297 206 231 45 30 chr6 93356513 93356580 -56160457 + L2a LINE L2 3359 3426 0 5 1297 298 305 11 5 chr6 93358401 93358512 -56158525 + MLT1G1 LTR MaLR 373 570 -9 5 1297 204 321 0 0 chr6 93358556 93358612 -56158425 - MIR SINE MIR -196 66 11 5 1297 361 264 65 9 chr6 93359103 93359210 -56157827 - ID_B1 SINE B4 -1 223 111 5 1297 3381 40 0 0 chr6 93359276 93359673 -56157364 + L1Md_F2 LINE L1 6168 6564 -18 5 1297 477 0 0 0 chr6 93359673 93359726 -56157311 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1297 1251 56 0 0 chr6 93361716 93361876 -56155161 + (GGGAGA)n Simple_repeat Simple_repeat 3 162 0 5 1297 313 185 0 0 chr6 93362387 93362452 -56154585 - B3 SINE B2 0 216 152 5 1297 255 31 0 0 chr6 93362932 93362964 -56154073 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 5 1297 232 325 38 16 chr6 93362964 93363077 -56153960 - L2c LINE L2 -13 3362 3246 5 1297 625 213 35 35 chr6 93363114 93363284 -56153753 + ORR1D2 LTR MaLR 12 181 -189 5 1297 599 154 7 0 chr6 93363284 93363420 -56153617 + CT-rich Low_complexity Low_complexity 2 138 0 5 1297 766 229 73 16 chr6 93363422 93363613 -56153424 + ORR1D2 LTR MaLR 169 370 0 5 1297 268 284 11 14 chr6 93364108 93364200 -56152837 + MTEa LTR MaLR 275 364 -15 5 1297 290 296 14 0 chr6 93364711 93364782 -56152255 + MLT1J LTR MaLR 240 311 -201 5 1297 248 320 58 26 chr6 93366680 93366834 -56150203 + MLT1J LTR MaLR 293 451 -16 5 1297 355 266 26 9 chr6 93367221 93367335 -56149702 - MER3 DNA MER1_type -62 147 32 5 1297 351 0 0 0 chr6 93368137 93368176 -56148861 + (CTAA)n Simple_repeat Simple_repeat 3 41 0 5 1297 467 113 21 0 chr6 93368217 93368314 -56148723 + (TCTG)n Simple_repeat Simple_repeat 4 102 0 5 1297 1180 251 121 0 chr6 93368316 93368647 -56148390 + ORR1D1 LTR MaLR 3 373 -1 5 1297 303 28 0 0 chr6 93368912 93368948 -56148089 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1297 423 0 0 0 chr6 93368948 93368994 -56148043 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1297 447 198 50 41 chr6 93369664 93369785 -56147252 + B1F SINE Alu 27 148 -1 5 1297 333 0 0 0 chr6 93370066 93370103 -56146934 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1297 1337 300 37 35 chr6 93370281 93370795 -56146242 + Lx9 LINE L1 6952 7466 -178 5 1297 260 406 100 25 chr6 93371344 93371665 -56145372 - MLT1K LTR MaLR -120 475 131 5 1297 225 0 0 0 chr6 93373276 93373301 -56143736 + (CAA)n Simple_repeat Simple_repeat 2 26 0 5 1297 369 0 0 0 chr6 93373301 93373342 -56143695 + (CTA)n Simple_repeat Simple_repeat 3 43 0 5 1297 826 322 111 14 chr6 93374274 93374768 -56142269 - MLT1F LTR MaLR -6 542 1 5 1297 460 217 67 0 chr6 93376599 93376719 -56140318 - L1MB7 LINE L1 -2 6182 6055 5 1297 501 174 0 0 chr6 93376719 93376817 -56140220 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 1297 358 290 125 94 chr6 93376829 93377062 -56139975 - B4A SINE B4 -6 286 58 5 1297 2920 99 72 29 chr6 93377062 93377517 -56139520 - Lx LINE L1 -182 6472 5998 5 1297 7622 85 21 24 chr6 93377548 93378702 -56138335 - L1Md_F2 LINE L1 -109 6888 5635 5 1297 727 185 62 0 chr6 93378702 93378848 -56138189 - RMER4B LTR ERVK -430 155 1 6 1297 6178 201 30 3 chr6 93378854 93380006 -56137031 - Lx7 LINE L1 -472 7224 6041 6 1297 297 236 205 20 chr6 93380009 93380160 -56136877 - L1M4 LINE L1 -1703 4941 4763 6 1297 437 128 26 0 chr6 93380207 93380285 -56136752 + GA-rich Low_complexity Low_complexity 2 81 0 6 1297 594 318 58 71 chr6 93380285 93380593 -56136444 - ORR1E LTR MaLR -53 306 3 6 1297 633 49 0 0 chr6 93380893 93380974 -56136063 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 1297 704 264 6 0 chr6 93380976 93381143 -56135894 - B3 SINE B2 -48 168 1 6 1297 329 289 57 77 chr6 93381191 93381491 -56135546 - L1M4 LINE L1 -6116 426 133 6 1297 207 338 12 0 chr6 93381515 93381595 -56135442 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 1297 301 331 74 16 chr6 93381639 93381829 -56135208 - B4A SINE B4 -91 201 1 6 1297 1191 53 0 0 chr6 93381924 93382075 -56134962 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 6 1297 893 249 152 27 chr6 93383968 93384298 -56132739 - MTE2b LTR MaLR -4 375 5 6 1297 416 216 19 38 chr6 93384329 93384435 -56132602 - MTD LTR MaLR 0 419 316 6 1297 675 271 12 6 chr6 93384442 93384613 -56132424 - MTD LTR MaLR -206 213 42 6 1297 242 262 15 15 chr6 93384965 93385031 -56132006 + B4A SINE B4 80 145 -147 6 1297 416 286 0 28 chr6 93384983 93385091 -56131946 + PB1D10 SINE Alu 13 117 0 6 1297 566 167 156 21 chr6 93386661 93386802 -56130235 + ORR1C2 LTR MaLR 173 332 -52 6 1297 1076 163 75 19 chr6 93386826 93387039 -56129998 + URR1B DNA MER1_type 1 225 0 6 1297 231 146 0 0 chr6 93387240 93387281 -56129756 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 6 1297 208 336 8 0 chr6 93388162 93388281 -56128756 + (TG)n Simple_repeat Simple_repeat 1 120 0 6 1297 481 292 103 69 chr6 93388300 93388561 -56128476 - B4 SINE B4 -18 274 5 6 1297 180 0 0 0 chr6 93388730 93388750 -56128287 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 6 1297 274 379 10 10 chr6 93391233 93391337 -56125700 + MIR SINE MIR 39 142 -120 6 1297 1162 244 0 4 chr6 93391484 93391710 -56125327 - Lx8 LINE L1 -887 6586 6362 6 1297 2225 140 8 14 chr6 93391710 93391767 -56125270 - ORR1B2 LTR MaLR 0 367 312 6 1297 1566 93 26 26 chr6 93391767 93391999 -56125038 + Lx3_Mus LINE L1 6778 7009 0 6 1297 2225 140 8 14 chr6 93391999 93392310 -56124727 - ORR1B2 LTR MaLR -56 311 1 6 1297 798 268 157 11 chr6 93392310 93392571 -56124466 - Lx8 LINE L1 -1117 6356 6058 6 1297 2972 237 62 63 chr6 93392591 93393466 -56123571 + Lx8 LINE L1 6598 7471 -2 6 1297 581 352 12 86 chr6 93394665 93395004 -56122033 - ORR1E LTR MaLR -2 357 44 6 1297 182 405 68 0 chr6 93395050 93395124 -56121913 - MIRb SINE MIR -172 96 18 6 1297 432 182 0 0 chr6 93396272 93396360 -56120677 + (TA)n Simple_repeat Simple_repeat 1 88 0 6 1297 1230 305 54 41 chr6 93396378 93397037 -56120000 - L1MA4A LINE L1 -376 5927 5261 6 1297 249 122 108 0 chr6 93397038 93397112 -56119925 + (GCTG)n Simple_repeat Simple_repeat 1 82 0 6 1297 787 239 214 11 chr6 93397114 93397389 -56119648 + RMER4B LTR ERVK 255 585 0 6 1297 385 299 16 0 chr6 93397389 93397516 -56119521 + L1MA4 LINE L1 5786 5914 -386 6 1297 258 231 0 0 chr6 93398757 93398822 -56118215 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 1297 3642 285 93 55 chr6 93399095 93400851 -56116186 - Lx8 LINE L1 0 7473 5616 6 1297 1378 173 18 5 chr6 93400851 93401072 -56115965 + URR1B DNA MER1_type 1 224 -1 6 1297 1212 277 15 98 chr6 93401072 93401276 -56115761 - Lx8 LINE L1 -265 5615 5444 6 1297 491 241 167 60 chr6 93401363 93401614 -56115423 + L1_Mur3 LINE L1 4247 4524 -1356 6 1297 1311 253 87 21 chr6 93401616 93402052 -56114985 + L1_Mur3 LINE L1 4808 5272 -608 6 1297 419 218 0 0 chr6 93402127 93402205 -56114832 + B4 SINE B4 97 174 -118 6 1297 2066 163 3 39 chr6 93403118 93403456 -56113581 - ORR1A3 LTR MaLR 0 326 1 6 1297 2615 57 3 0 chr6 93403461 93403793 -56113244 + ORR1A1 LTR MaLR 14 346 0 6 1297 513 47 0 0 chr6 93403830 93403894 -56113143 + (CATA)n Simple_repeat Simple_repeat 3 66 0 6 1297 626 212 75 0 chr6 93404457 93404603 -56112434 + MTE2b LTR MaLR 5 161 -218 6 1297 1493 252 9 47 chr6 93404603 93404944 -56112093 + MTE2a LTR MaLR 52 379 0 6 1297 1338 259 18 14 chr6 93405600 93405882 -56111155 + B4A SINE B4 2 284 -8 6 1297 512 296 63 58 chr6 93406036 93406226 -56110811 + MER20 DNA MER1_type 29 219 0 6 1297 498 356 67 71 chr6 93407018 93407454 -56109583 + MLT1F2 LTR MaLR 1 434 -126 6 1297 308 272 151 33 chr6 93408240 93408392 -56108645 - LTR16A LTR ERVL 0 451 282 6 1297 373 318 82 107 chr6 93408401 93408530 -56108507 + L1ME3 LINE L1 5701 5827 -335 6 1297 315 0 0 0 chr6 93408530 93408565 -56108472 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1297 1130 94 0 0 chr6 93408565 93408703 -56108334 - B1_Mus2 SINE Alu -9 138 1 6 1297 373 318 82 107 chr6 93408703 93408973 -56108064 + L1ME3 LINE L1 5828 6090 -72 6 1297 1564 73 0 5 chr6 93409227 93409421 -56107616 + B2_Mm2 SINE B2 2 194 -1 6 1297 2742 140 2 5 chr6 93409439 93409869 -56107168 - Lx2B LINE L1 -231 5646 5218 6 1297 6824 146 74 9 chr6 93409871 93411135 -56105902 + Lx2B LINE L1 5649 6995 -5 6 1297 210 158 0 0 chr6 93411982 93412020 -56105017 + T-rich Low_complexity Low_complexity 1 38 0 6 1297 279 319 0 28 chr6 93412085 93412156 -56104881 + ID4 SINE ID 1 69 -14 6 1297 2811 273 124 31 chr6 93413242 93413254 -56103783 - Lx9 LINE L1 -169 7475 7465 6 1297 213 108 0 0 chr6 93413254 93413291 -56103746 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1297 2811 273 124 31 chr6 93413291 93413969 -56103068 - Lx9 LINE L1 -180 7464 6715 6 1297 504 48 0 0 chr6 93413969 93414032 -56103005 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 1297 324 0 0 0 chr6 93414032 93414067 -56102970 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1297 2811 289 100 42 chr6 93414067 93414873 -56102164 - Lx9 LINE L1 -930 6714 5726 6 1297 24 53 0 0 chr6 93414912 93414950 -56102087 + AT_rich Low_complexity Low_complexity 1 38 0 6 1297 945 299 9 0 chr6 93414978 93415192 -56101845 - B4A SINE B4 -75 217 2 6 1297 1134 294 11 0 chr6 93415244 93415530 -56101507 - B4 SINE B4 -2 290 2 6 1297 212 341 149 28 chr6 93416703 93416884 -56100153 + L2a LINE L2 2999 3201 -225 6 1297 234 274 0 45 chr6 93417342 93417430 -56099607 + GA-rich Low_complexity Low_complexity 3 86 0 6 1297 562 170 71 9 chr6 93417688 93417801 -56099236 + MTD LTR MaLR 282 401 -18 6 1297 258 321 0 45 chr6 93418183 93418197 -56098840 + B4 SINE B4 77 156 -132 6 1297 346 209 0 43 chr6 93418197 93418267 -56098770 + B1_Mur4 SINE Alu 7 73 -77 6 1297 23 0 0 0 chr6 93418291 93418314 -56098723 + AT_rich Low_complexity Low_complexity 1 23 0 6 1297 656 217 92 27 chr6 93418442 93418627 -56098410 - B3A SINE B2 0 198 2 6 1297 213 373 72 29 chr6 93419049 93419187 -56097850 - MIRc SINE MIR -122 146 3 6 1297 326 100 17 0 chr6 93419207 93419267 -56097770 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1297 292 235 68 48 chr6 93419320 93419423 -56097614 - RMER12 LTR ERVK -474 848 744 6 1297 320 250 0 17 chr6 93419883 93420001 -56097036 + GA-rich Low_complexity Low_complexity 3 118 0 6 1297 288 259 0 0 chr6 93421494 93421602 -56095435 + (TG)n Simple_repeat Simple_repeat 1 108 0 6 1297 190 329 37 0 chr6 93421609 93421691 -56095346 + L2a LINE L2 3342 3426 0 6 1297 4218 91 12 3 chr6 93423057 93423813 -56093224 - Lx2 LINE L1 -837 6160 5390 6 1297 369 0 0 0 chr6 93423813 93423854 -56093183 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1297 402 39 0 0 chr6 93423854 93423905 -56093132 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1297 629 339 96 24 chr6 93423957 93424208 -56092829 - B4A SINE B4 -23 269 1 6 1297 509 306 114 44 chr6 93424994 93425336 -56091701 - ORR1D2 LTR MaLR 0 370 5 6 1297 288 0 0 0 chr6 93425561 93425593 -56091444 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1297 482 83 14 0 chr6 93425593 93425664 -56091373 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 6 1297 3336 269 127 13 chr6 93427393 93427555 -56089482 + L1_Mur3 LINE L1 3840 4016 -1864 6 1297 1320 113 16 21 chr6 93427555 93427744 -56089293 + B2_Mm2 SINE B2 2 189 -6 6 1297 3336 269 127 13 chr6 93427744 93429041 -56087996 + L1_Mur3 LINE L1 4017 5464 -416 6 1297 1220 297 51 29 chr6 93429046 93429233 -56087804 + Lx8 LINE L1 6622 6804 -669 6 1297 1003 181 31 0 chr6 93429233 93429426 -56087611 - Lx9 LINE L1 -1 7643 7445 6 1297 1220 297 51 29 chr6 93429426 93429730 -56087307 + Lx8 LINE L1 6805 7123 -350 6 1297 4672 60 13 0 chr6 93429735 93430515 -56086522 - L1Md_F2 LINE L1 -413 6169 5379 6 1297 26 0 0 0 chr6 93431134 93431160 -56085877 + AT_rich Low_complexity Low_complexity 1 26 0 6 1297 3883 292 123 31 chr6 93431160 93433300 -56083737 - Lx8 LINE L1 -5 7468 5120 6 1297 345 47 0 0 chr6 93433300 93433343 -56083694 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 6 1297 3883 280 101 21 chr6 93433343 93434322 -56082715 - Lx8 LINE L1 -761 5119 4046 6 1297 185 163 20 0 chr6 93434524 93434573 -56082464 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 1297 754 262 90 39 chr6 93434579 93434889 -56082148 - L1_Rod LINE L1 -3942 1905 1580 6 1297 492 86 0 0 chr6 93435309 93435379 -56081658 + (GGA)n Simple_repeat Simple_repeat 3 72 0 6 1297 318 290 26 19 chr6 93436388 93436530 -56080507 - MIRb SINE MIR -106 162 24 6 1297 370 235 87 19 chr6 93436749 93436853 -56080184 - MER20 DNA MER1_type -105 114 4 6 1297 702 299 36 23 chr6 93436954 93437173 -56079864 + B4 SINE B4 2 223 -69 6 1297 260 222 13 65 chr6 93437196 93437273 -56079764 + B4 SINE B4 1 73 -219 6 1297 326 221 88 0 chr6 93437414 93437482 -56079555 + ID4_ SINE ID 1 74 -9 6 1297 819 250 124 5 chr6 93437542 93437735 -56079302 + ID_B1 SINE B4 1 216 -8 6 1297 593 236 8 0 chr6 93438963 93439215 -56077822 + (TG)n Simple_repeat Simple_repeat 1 254 0 6 1297 572 305 64 104 chr6 93439576 93439711 -56077326 + MER2 DNA MER2_type 10 120 -225 6 1297 1088 122 0 16 chr6 93439711 93439894 -56077143 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1297 572 305 64 104 chr6 93439894 93440084 -56076953 + MER2 DNA MER2_type 121 322 -23 6 1297 738 321 14 9 chr6 93441655 93441869 -56075168 + B4A SINE B4 5 219 -73 7 1297 394 248 0 9 chr6 93441869 93441979 -56075058 - HAL1-2a_MD LINE L1 -560 2464 2356 7 1297 855 0 0 0 chr6 93441983 93442078 -56074959 + (ATGGTG)n Simple_repeat Simple_repeat 4 98 0 7 1297 2482 192 40 13 chr6 93442649 93443461 -56073576 + L1_Mur3 LINE L1 892 1725 -4152 7 1297 1376 287 6 17 chr6 93443465 93443650 -56073387 + Lx5 LINE L1 6555 6738 -722 7 1297 206 32 0 31 chr6 93443650 93443682 -56073355 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1297 2163 272 32 5 chr6 93443682 93444212 -56072825 + Lx5 LINE L1 6455 6965 -85 7 1297 291 28 0 0 chr6 93444222 93444258 -56072779 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1297 270 0 0 0 chr6 93444258 93444287 -56072750 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1297 22 0 0 0 chr6 93444301 93444323 -56072714 + AT_rich Low_complexity Low_complexity 1 22 0 7 1297 3096 174 91 32 chr6 93444324 93445008 -56072029 - Lx9 LINE L1 -8 7636 6913 7 1297 531 0 0 0 chr6 93445149 93445208 -56071829 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1297 207 0 0 0 chr6 93446351 93446374 -56070663 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1297 266 343 123 22 chr6 93446773 93447135 -56069902 + MLT1F1 LTR MaLR 1 393 -198 7 1297 236 258 47 47 chr6 93448116 93448222 -56068815 + MLT1F1 LTR MaLR 490 595 0 7 1297 1591 88 5 0 chr6 93448589 93448805 -56068232 - L1_Mus1 LINE L1 0 6567 6351 7 1297 183 146 36 18 chr6 93448977 93449033 -56068004 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 7 1297 273 279 138 53 chr6 93449061 93449250 -56067787 - Lx8 LINE L1 0 7473 7269 7 1297 2296 301 67 72 chr6 93449264 93450506 -56066531 - Lx8 LINE L1 -377 7096 5869 7 1297 232 262 45 15 chr6 93450736 93450802 -56066235 - MLT1F2 LTR MaLR -282 278 211 7 1297 465 19 0 0 chr6 93450805 93450859 -56066178 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1297 371 327 25 25 chr6 93450860 93451017 -56066020 - MLT1F2 LTR MaLR -398 162 6 7 1297 513 0 0 0 chr6 93451454 93451511 -56065526 + (CATA)n Simple_repeat Simple_repeat 2 58 0 7 1297 324 253 81 0 chr6 93451556 93451643 -56065394 + MT2A LTR ERVL 326 419 -114 7 1297 2972 87 20 0 chr6 93453396 93453787 -56063250 + MTB LTR MaLR 1 399 -1 7 1298 261 0 0 0 chr6 93454364 93454393 -56062644 + (TTAAA)n Simple_repeat Simple_repeat 4 32 0 7 1298 413 270 95 98 chr6 93454456 93454535 -56062502 + RMER10A LTR ERVL 124 190 -252 7 1298 459 0 0 0 chr6 93454535 93454586 -56062451 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1298 569 122 9 0 chr6 93454586 93454700 -56062337 + (TAGA)n Simple_repeat Simple_repeat 1 116 0 7 1298 413 270 95 98 chr6 93454700 93454915 -56062122 + RMER10A LTR ERVL 191 417 -25 7 1298 726 228 91 162 chr6 93455108 93455558 -56061479 - RLTR19-int LTR ERVK -3130 3007 2590 7 1298 2286 105 9 3 chr6 93456396 93456721 -56060316 + ORR1A2 LTR MaLR 1 327 0 7 1298 21 0 0 0 chr6 93456838 93456859 -56060178 + AT_rich Low_complexity Low_complexity 1 21 0 7 1298 352 317 0 0 chr6 93456900 93456982 -56060055 - RSINE1 SINE B4 -22 143 62 7 1298 345 47 0 0 chr6 93457111 93457154 -56059883 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1298 420 270 8 17 chr6 93457380 93457497 -56059540 + MIRb SINE MIR 65 180 -88 7 1298 315 23 0 22 chr6 93458007 93458052 -56058985 + tRNA-Ile-ATA tRNA tRNA 1 44 -33 7 1298 248 288 25 0 chr6 93458178 93458258 -56058779 + L1M4b LINE L1 2381 2462 -4872 7 1298 189 107 0 0 chr6 93458260 93458288 -56058749 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1298 582 301 73 55 chr6 93458325 93458599 -56058438 + B4 SINE B4 3 281 -11 7 1298 1504 276 102 14 chr6 93458865 93459160 -56057877 + L1M4b LINE L1 3248 3580 -3426 7 1298 276 30 0 0 chr6 93459160 93459193 -56057844 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 1298 1504 276 102 14 chr6 93459193 93459563 -56057474 + L1M4b LINE L1 3581 3971 -3035 7 1298 2635 213 51 108 chr6 93460026 93461615 -56055422 + RMER1B Other Other 1 1065 -1 7 1298 225 207 24 12 chr6 93461607 93461690 -56055347 + L1M4b LINE L1 3975 4058 -2948 7 1298 351 0 0 0 chr6 93461716 93461755 -56055282 + (CATA)n Simple_repeat Simple_repeat 1 39 0 7 1298 326 212 75 0 chr6 93462303 93462383 -56054654 + B4A SINE B4 3 88 -204 7 1298 355 292 7 111 chr6 93462417 93462552 -56054485 + B4A SINE B4 172 292 0 7 1298 1142 99 6 0 chr6 93462607 93462778 -56054259 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 7 1298 308 83 0 20 chr6 93462784 93462833 -56054204 + (GAAAA)n Simple_repeat Simple_repeat 4 51 0 7 1298 765 76 0 0 chr6 93462838 93462943 -56054094 + (GGAA)n Simple_repeat Simple_repeat 1 105 0 7 1298 318 98 20 0 chr6 93463149 93463200 -56053837 - 5S rRNA rRNA -31 90 39 7 1298 493 291 59 54 chr6 93463426 93463648 -56053389 + ERVL-B4-int LTR ERVL 4285 4507 -1250 7 1298 1428 267 157 6 chr6 93463757 93464266 -56052771 - Lx8 LINE L1 -2 7471 6886 7 1298 277 301 44 0 chr6 93464273 93464386 -56052651 + ERVL-B4-int LTR ERVL 4622 4739 -1018 7 1298 253 336 30 30 chr6 93464461 93464593 -56052444 + ERVL-B4-int LTR ERVL 4794 4925 -789 7 1298 497 233 90 0 chr6 93464709 93464842 -56052195 + ERVL-B4-int LTR ERVL 5114 5258 -456 7 1298 249 33 0 0 chr6 93465287 93465317 -56051720 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 7 1298 21 57 0 0 chr6 93465479 93465514 -56051523 + AT_rich Low_complexity Low_complexity 1 35 0 7 1298 506 358 64 64 chr6 93466785 93467266 -56049771 + MLT1H LTR MaLR 67 547 -2 7 1298 1900 197 98 16 chr6 93467419 93467806 -56049231 - MTD LTR MaLR 0 419 1 7 1298 1504 269 21 3 chr6 93467935 93468307 -56048730 - MTE2b LTR MaLR 0 379 1 7 1298 1915 108 153 19 chr6 93469212 93469532 -56047505 + Lx2 LINE L1 6633 6995 -2 7 1298 208 341 0 22 chr6 93469617 93469707 -56047330 + MER5B DNA MER1_type 11 98 -80 7 1298 263 286 57 69 chr6 93470826 93471160 -56045877 - L1ME4a LINE L1 -164 5960 5631 7 1298 375 312 0 9 chr6 93472688 93472801 -56044236 - PB1D10 SINE Alu -3 114 3 7 1298 714 300 45 37 chr6 93473215 93473461 -56043576 + B4 SINE B4 1 248 -44 7 1298 204 97 0 0 chr6 93473501 93473532 -56043505 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1298 347 270 35 35 chr6 93473819 93473934 -56043103 + PB1D10 SINE Alu 3 117 0 7 1298 455 267 92 0 chr6 93474050 93474170 -56042867 + RSINE1 SINE B4 29 159 -6 7 1298 236 232 24 0 chr6 93474183 93474265 -56042772 + (CATG)n Simple_repeat Simple_repeat 3 86 0 7 1298 454 250 7 70 chr6 93475123 93475224 -56041813 + B4A SINE B4 134 226 -66 7 1298 1740 177 151 8 chr6 93475224 93475589 -56041448 - MTD LTR MaLR 0 419 3 7 1298 454 250 7 70 chr6 93475589 93475629 -56041408 + B4A SINE B4 227 266 -26 7 1298 1086 101 0 0 chr6 93475631 93475789 -56041248 + (CA)n Simple_repeat Simple_repeat 1 158 0 7 1298 28 29 0 0 chr6 93475867 93475902 -56041135 + AT_rich Low_complexity Low_complexity 1 35 0 7 1298 269 68 23 0 chr6 93476003 93476047 -56040990 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 7 1298 184 315 0 18 chr6 93476666 93476721 -56040316 + MIRm SINE MIR 199 252 -24 7 1298 468 0 0 0 chr6 93476875 93476927 -56040110 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1298 823 299 30 30 chr6 93476927 93477196 -56039841 - B4 SINE B4 -23 269 1 7 1298 237 276 0 21 chr6 93477225 93477314 -56039723 + MIR SINE MIR 64 151 -117 7 1298 567 165 107 0 chr6 93477319 93477422 -56039615 + PB1D9 SINE Alu 6 119 -1 7 1298 636 286 46 0 chr6 93478375 93478550 -56038487 + B3 SINE B2 9 191 -25 7 1298 427 295 90 47 chr6 93478678 93478934 -56038103 - L1ME3 LINE L1 -106 6056 5790 7 1298 965 270 24 7 chr6 93479045 93479332 -56037705 + Lx8 LINE L1 6961 7252 -221 7 1298 30 0 0 0 chr6 93479379 93479409 -56037628 + AT_rich Low_complexity Low_complexity 1 30 0 7 1298 468 191 0 0 chr6 93479409 93479503 -56037534 + GA-rich Low_complexity Low_complexity 4 97 0 7 1298 385 276 69 35 chr6 93479742 93479915 -56037122 - L1ME3 LINE L1 -697 5476 5298 7 1298 206 32 32 0 chr6 93480069 93480100 -56036937 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 7 1298 471 18 0 0 chr6 93480191 93480247 -56036790 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1298 303 140 0 0 chr6 93481728 93481778 -56035259 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 7 1298 401 0 20 0 chr6 93483102 93483151 -56033886 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1298 1332 261 155 43 chr6 93483197 93483869 -56033168 - L1ME1 LINE L1 -61 6118 5372 7 1298 538 116 54 18 chr6 93484193 93484360 -56032677 + (GTGTG)n Simple_repeat Simple_repeat 2 174 0 7 1298 825 168 8 8 chr6 93484371 93484613 -56032424 + (GTGTG)n Simple_repeat Simple_repeat 1 242 0 7 1298 315 308 18 18 chr6 93485035 93485144 -56031893 - ORR1E LTR MaLR -236 123 15 7 1298 299 320 54 31 chr6 93486042 93486171 -56030866 - MIRc SINE MIR -100 168 37 7 1298 192 269 82 17 chr6 93487651 93487788 -56029249 + MIRm SINE MIR 102 251 -17 7 1298 297 319 0 0 chr6 93488650 93488741 -56028296 + BC1_Mm scRNA scRNA 5 95 -57 7 1298 378 0 0 0 chr6 93488875 93488917 -56028120 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1298 636 315 44 78 chr6 93489085 93489498 -56027539 + MT2A LTR ERVL 1 399 -134 7 1298 1776 311 80 15 chr6 93489498 93490176 -56026861 + MERVL_2A-int LTR ERVL 464 1185 -4576 7 1298 536 315 51 19 chr6 93490178 93490503 -56026534 + Lx9 LINE L1 7163 7462 -182 7 1298 1237 309 107 8 chr6 93490610 93491116 -56025921 + MERVL_2A-int LTR ERVL 1139 1694 -4020 7 1298 1621 290 100 6 chr6 93491123 93491300 -56025737 + ERVL-int LTR ERVL 4631 4825 -936 7 1298 618 14 0 0 chr6 93491300 93491371 -56025666 + (TC)n Simple_repeat Simple_repeat 2 72 0 7 1298 1621 290 100 6 chr6 93491371 93491713 -56025324 + ERVL-int LTR ERVL 4826 5198 -563 7 1298 1161 149 10 0 chr6 93491722 93491916 -56025121 + URR1B DNA MER1_type 30 225 0 7 1298 1943 265 47 28 chr6 93491916 93492196 -56024841 + ERVL-int LTR ERVL 5128 5424 -333 7 1298 1173 65 124 6 chr6 93492196 93492365 -56024672 + B2_Mm2 SINE B2 2 190 -5 7 1298 1943 265 47 28 chr6 93492365 93492701 -56024336 + ERVL-int LTR ERVL 5425 5756 -1 7 1298 305 325 124 29 chr6 93492766 93492975 -56024062 + MT2A LTR ERVL 303 531 -2 7 1298 315 300 9 0 chr6 93494488 93494598 -56022439 + PB1D10 SINE Alu 1 111 -6 7 1298 186 143 0 0 chr6 93494993 93495028 -56022009 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1298 480 276 41 0 chr6 93495049 93495172 -56021865 - B4A SINE B4 0 292 165 7 1298 879 40 0 24 chr6 93495378 93495505 -56021532 + (TAGA)n Simple_repeat Simple_repeat 1 124 0 7 1298 337 225 105 26 chr6 93495895 93496009 -56021028 - MIRb SINE MIR -120 148 26 7 1298 689 115 0 17 chr6 93496610 93496725 -56020312 + (GAA)n Simple_repeat Simple_repeat 3 115 0 7 1298 240 355 116 29 chr6 93497036 93497277 -56019760 + MLT1L LTR MaLR 188 449 -161 7 1298 767 168 0 0 chr6 93498088 93498231 -56018806 - URR1B DNA MER1_type 0 225 83 8 1298 395 256 0 0 chr6 93498688 93498770 -56018267 + ID4 SINE ID 2 83 0 8 1298 222 91 0 0 chr6 93499048 93499081 -56017956 + (CATG)n Simple_repeat Simple_repeat 2 34 0 8 1298 1080 252 62 31 chr6 93499202 93499600 -56017437 - L1MA4 LINE L1 -373 5927 5517 8 1298 313 305 128 0 chr6 93500000 93500141 -56016896 + RMER15 LTR ERVL 375 533 -42 1 1298 987 106 0 0 chr6 93500563 93500714 -56016323 + (GAAA)n Simple_repeat Simple_repeat 3 153 0 2 1298 1184 88 0 6 chr6 93500715 93500887 -56016150 + (GGAAA)n Simple_repeat Simple_repeat 1 171 0 3 1298 965 159 41 78 chr6 93502115 93502333 -56014704 - URR1A DNA MER1_type 0 226 17 4 1298 1722 21 0 0 chr6 93502379 93502572 -56014465 + B2_Mm1a SINE B2 1 193 0 5 1298 267 31 0 0 chr6 93502572 93502604 -56014433 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1298 768 270 160 52 chr6 93502610 93502973 -56014064 - MT2A LTR ERVL -86 447 46 7 1298 189 175 0 0 chr6 93503791 93503831 -56013206 + A-rich Low_complexity Low_complexity 1 40 0 8 1298 235 273 143 0 chr6 93503831 93503908 -56013129 - MT2A LTR ERVL -445 88 1 7 1298 985 210 26 0 chr6 93503961 93504156 -56012881 + B3 SINE B2 1 200 -16 9 1298 280 279 75 0 chr6 93504177 93504338 -56012699 - Zaphod DNA Tip100 -263 3768 3596 1 1298 26 30 0 0 chr6 93504515 93504548 -56012489 + AT_rich Low_complexity Low_complexity 1 33 0 1 1298 27 62 0 0 chr6 93504625 93504673 -56012364 + AT_rich Low_complexity Low_complexity 1 48 0 1 1298 2206 244 68 94 chr6 93505266 93506292 -56010745 - Lx9 LINE L1 -506 5341 4342 1 1298 1739 208 70 32 chr6 93506299 93506711 -56010326 + Lx9 LINE L1 5325 5752 -95 1 1298 1348 222 64 0 chr6 93506715 93507026 -56010011 - MTD LTR MaLR -30 389 59 1 1298 2064 268 118 48 chr6 93507178 93508041 -56008996 + Lx9 LINE L1 6158 7081 -563 1 1298 279 0 0 0 chr6 93508045 93508076 -56008961 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1298 541 260 12 83 chr6 93508248 93508416 -56008621 + ID_B1 SINE B4 52 207 -17 1 1298 658 284 108 37 chr6 93508817 93509197 -56007840 + L1MC4 LINE L1 7238 7644 -398 1 1298 1107 242 117 9 chr6 93509306 93509549 -56007488 + ORR1D2 LTR MaLR 1 266 -104 1 1298 1392 143 13 5 chr6 93509549 93509773 -56007264 + URR1A DNA MER1_type 1 226 0 1 1298 1107 242 117 9 chr6 93509773 93509863 -56007174 + ORR1D2 LTR MaLR 267 369 -1 1 1298 920 208 16 0 chr6 93509871 93510054 -56006983 + ORR1D2-int LTR MaLR 9 194 -1176 1 1298 1660 196 29 26 chr6 93510067 93510246 -56006791 + ORR1D2-int LTR MaLR 283 460 -910 1 1298 564 56 0 0 chr6 93510246 93510318 -56006719 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1298 1660 196 29 26 chr6 93510318 93510521 -56006516 + ORR1D2-int LTR MaLR 461 666 -704 1 1298 692 209 202 81 chr6 93510529 93510880 -56006157 + RMER4B LTR ERVK 20 412 -173 2 1298 231 309 89 18 chr6 93510867 93510979 -56006058 + RMER19C LTR ERVK 469 588 -23 2 1298 3278 183 42 18 chr6 93510973 93511658 -56005379 + ORR1D2-int LTR MaLR 669 1370 0 1 1298 948 256 77 4 chr6 93511658 93511893 -56005144 + ORR1D2 LTR MaLR 1 252 -118 1 1298 1474 49 0 1 chr6 93512472 93512677 -56004360 - L1VL2 LINE L1 -2583 3300 3095 2 1298 11507 77 87 11 chr6 93512675 93515080 -56001957 - L1VL2 LINE L1 -997 2917 326 2 1298 376 191 137 11 chr6 93515082 93515177 -56001860 + ORR1D2 LTR MaLR 264 370 0 1 1298 228 344 21 0 chr6 93515187 93515280 -56001757 + L1MC4 LINE L1 7797 7891 -151 1 1298 611 173 25 5 chr6 93515452 93515655 -56001382 + CT-rich Low_complexity Low_complexity 1 206 0 2 1298 315 295 35 18 chr6 93515655 93515769 -56001268 - PB1D9 SINE Alu 0 120 5 2 1298 243 0 0 0 chr6 93516620 93516647 -56000390 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 2 1298 225 250 23 70 chr6 93516852 93516938 -56000099 + MTEa LTR MaLR 3 84 -295 2 1298 221 354 0 39 chr6 93518190 93518293 -55998744 + B4A SINE B4 3 101 -191 2 1298 369 0 0 0 chr6 93518293 93518334 -55998703 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1298 315 0 0 0 chr6 93518334 93518368 -55998669 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1298 421 266 66 40 chr6 93519487 93519714 -55997323 - RLTR42-int LTR ERVK -4124 1398 1166 3 1298 784 278 100 0 chr6 93519877 93520118 -55996919 - B4A SINE B4 -2 290 26 3 1298 816 74 22 22 chr6 93520201 93520339 -55996698 + (CATATA)n Simple_repeat Simple_repeat 1 138 0 3 1298 267 103 0 0 chr6 93521063 93521102 -55995935 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1298 282 396 69 35 chr6 93522448 93522684 -55994353 - MLT1K LTR MaLR -276 319 84 3 1298 261 0 0 0 chr6 93522684 93522713 -55994324 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1298 282 396 69 35 chr6 93522713 93522766 -55994271 - MLT1K LTR MaLR -512 83 21 3 1298 1061 197 9 28 chr6 93525098 93525312 -55991725 - URR1B DNA MER1_type 0 225 16 3 1298 1761 199 55 21 chr6 93526085 93526464 -55990573 - MTC LTR MaLR -2 419 28 3 1298 435 251 229 0 chr6 93526643 93526818 -55990219 + B3 SINE B2 1 215 -1 3 1298 870 248 0 5 chr6 93526852 93527047 -55989990 + B4A SINE B4 98 291 -1 4 1298 312 368 49 10 chr6 93527593 93527796 -55989241 + LTR16A LTR ERVL 145 355 -96 4 1298 186 43 0 0 chr6 93528085 93528108 -55988929 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 4 1298 6687 62 11 25 chr6 93528413 93529289 -55987748 - L1_Mus2 LINE L1 0 6566 5703 4 1298 926 145 0 6 chr6 93529525 93529692 -55987345 + GA-rich Low_complexity Low_complexity 3 168 0 4 1298 217 149 0 21 chr6 93530010 93530058 -55986979 + ID4_ SINE ID 35 81 -2 4 1298 400 291 99 22 chr6 93531166 93531398 -55985639 - Lx9 LINE L1 -27 7617 7368 4 1298 189 0 0 0 chr6 93532000 93532021 -55985016 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1298 7219 75 3 12 chr6 93532242 93533211 -55983826 + L1_Mus3 LINE L1 5703 6638 0 4 1298 188 310 17 0 chr6 93533533 93533591 -55983446 + L2a LINE L2 3364 3422 -4 4 1298 1499 165 49 108 chr6 93533871 93534259 -55982778 + ORR1C2 LTR MaLR 1 365 -19 5 1298 667 214 0 0 chr6 93534762 93534893 -55982144 + RSINE1 SINE B4 2 132 -33 5 1298 345 316 66 53 chr6 93535577 93535821 -55981216 + MLT1K LTR MaLR 324 570 -25 5 1298 468 0 0 0 chr6 93536518 93536570 -55980467 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1298 391 172 67 33 chr6 93536574 93536642 -55980395 + Lx4B LINE L1 6680 6752 -306 5 1298 261 0 0 0 chr6 93536642 93536671 -55980366 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1298 391 172 67 33 chr6 93536671 93536692 -55980345 + Lx4B LINE L1 6753 6772 -286 5 1298 912 183 15 35 chr6 93536692 93536890 -55980147 + Lx4B LINE L1 6865 7058 0 5 1298 525 58 0 0 chr6 93537261 93537330 -55979707 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1298 624 306 61 25 chr6 93537407 93537685 -55979352 - B4A SINE B4 -3 289 2 5 1298 1030 216 36 56 chr6 93537957 93538315 -55978722 + RMER17C LTR ERVK 3 353 -57 5 1298 771 296 14 14 chr6 93539084 93539303 -55977734 + ID_B1 SINE B4 2 220 -4 5 1298 210 71 0 0 chr6 93541032 93541060 -55975977 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1298 549 0 0 0 chr6 93542317 93542378 -55974659 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 6 1298 1254 225 158 61 chr6 93542380 93542872 -55974165 - MT2B LTR ERVL -61 540 1 6 1298 9342 107 22 15 chr6 93542986 93544094 -55972943 - Lx2B LINE L1 -1 6999 5883 6 1298 5627 107 131 9 chr6 93544094 93544970 -55972067 + RLTR13C1 LTR ERVK 1 983 0 6 1298 9342 107 22 15 chr6 93544970 93545215 -55971822 - Lx2B LINE L1 -1118 5882 5636 6 1298 1003 167 272 0 chr6 93545604 93545898 -55971139 - ORR1D1 LTR MaLR 0 374 1 6 1298 378 0 0 0 chr6 93545957 93545999 -55971038 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 6 1298 197 256 71 109 chr6 93546404 93546588 -55970449 - MIRb SINE MIR -28 240 64 6 1298 1163 100 0 11 chr6 93546723 93546905 -55970132 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1298 429 230 13 7 chr6 93546905 93547058 -55969979 + GA-rich Low_complexity Low_complexity 1 154 0 6 1298 278 222 67 100 chr6 93547980 93548130 -55968907 - MER53 DNA hAT -44 149 5 7 1298 1159 249 49 29 chr6 93548906 93549250 -55967787 - Lx6 LINE L1 -2 7458 7108 7 1298 1292 245 60 37 chr6 93550987 93551060 -55965977 - MTD LTR MaLR -16 403 325 7 1298 2302 140 56 0 chr6 93551060 93551418 -55965619 + RLTR14 LTR ERV1 4 381 -1 7 1298 1292 245 60 37 chr6 93551418 93551726 -55965311 - MTD LTR MaLR -95 324 13 7 1298 1004 224 39 192 chr6 93551822 93552436 -55964601 + L1MA6 LINE L1 3419 3938 -2205 7 1298 230 282 35 0 chr6 93552455 93552529 -55964508 + PB1D10 SINE Alu 28 104 -13 7 1298 288 0 0 0 chr6 93552529 93552561 -55964476 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 7 1298 2407 274 114 35 chr6 93553205 93553392 -55963645 + L1MA6 LINE L1 3919 4135 -2008 7 1298 1860 155 159 110 chr6 93553392 93553452 -55963585 - MT2A LTR ERVL 0 533 484 7 1298 580 87 11 11 chr6 93553452 93553545 -55963492 + (TA)n Simple_repeat Simple_repeat 1 93 0 7 1298 1860 155 159 110 chr6 93553545 93553992 -55963045 - MT2A LTR ERVL -50 483 1 7 1298 2407 274 114 35 chr6 93553992 93554806 -55962231 + L1MA6 LINE L1 4136 5002 -1141 7 1298 962 123 203 0 chr6 93554806 93554993 -55962044 + URR1B DNA MER1_type 1 225 0 7 1298 2407 299 280 32 chr6 93554993 93555347 -55961690 + L1MA6 LINE L1 5003 5438 -862 7 1298 7479 18 0 0 chr6 93555347 93556169 -55960868 - RLTR13B2 LTR ERVK 0 822 1 8 1298 1066 332 85 28 chr6 93556169 93556761 -55960276 + L1MA6 LINE L1 5439 6069 -231 7 1298 23 33 0 0 chr6 93556815 93556845 -55960192 + AT_rich Low_complexity Low_complexity 1 30 0 8 1298 262 261 149 30 chr6 93556992 93557126 -55959911 - Lx7 LINE L1 0 7696 7547 8 1298 908 183 120 31 chr6 93557159 93557418 -55959619 - Lx7 LINE L1 -239 7457 7176 8 1298 5238 197 68 20 chr6 93557414 93558495 -55958542 - Lx7 LINE L1 -678 7018 5886 8 1298 207 283 20 20 chr6 93558588 93558689 -55958348 + (TATATG)n Simple_repeat Simple_repeat 4 104 0 8 1298 265 292 143 21 chr6 93558767 93558907 -55958130 + B4A SINE B4 5 161 -131 8 1298 532 225 144 21 chr6 93558938 93559174 -55957863 - RLTR10A LTR ERVK 0 411 147 8 1298 497 150 0 10 chr6 93559311 93559412 -55957625 + (CA)n Simple_repeat Simple_repeat 1 100 0 8 1298 276 30 0 0 chr6 93559880 93559913 -55957124 + (TTA)n Simple_repeat Simple_repeat 2 34 0 8 1298 4380 93 14 5 chr6 93559981 93560573 -55956464 - MT2B LTR ERVL -2 599 3 8 1298 820 172 0 11 chr6 93560779 93560812 -55956225 + polypurine Low_complexity Low_complexity 2 34 0 8 1298 1073 101 0 22 chr6 93560812 93560995 -55956042 + (GGA)n Simple_repeat Simple_repeat 2 180 0 9 1298 820 172 0 11 chr6 93560995 93561034 -55956003 + polypurine Low_complexity Low_complexity 35 72 0 9 1298 1118 85 6 17 chr6 93561034 93561214 -55955823 + (GGA)n Simple_repeat Simple_repeat 3 180 0 9 1298 820 172 0 11 chr6 93561214 93561316 -55955721 + polypurine Low_complexity Low_complexity 73 173 0 9 1298 26 64 0 0 chr6 93561531 93561578 -55955459 + AT_rich Low_complexity Low_complexity 1 47 0 9 1298 1088 326 0 6 chr6 93562125 93562471 -55954566 + Lx7 LINE L1 6120 6463 -1233 9 1298 4101 110 28 23 chr6 93562472 93563115 -55953922 + Lx LINE L1 5992 6637 -17 9 1298 1731 252 33 29 chr6 93563124 93563574 -55953463 + Lx7 LINE L1 6635 7086 -610 9 1298 2236 190 29 10 chr6 93563575 93564059 -55952978 + RLTR16 LTR ERVK 1 493 -12 9 1298 548 301 98 88 chr6 93564151 93564527 -55952510 + Lx7 LINE L1 7079 7470 -3 9 1298 186 133 0 0 chr6 93564547 93564577 -55952460 + (CATATA)n Simple_repeat Simple_repeat 4 33 0 9 1298 310 344 76 19 chr6 93564752 93565016 -55952021 + L1MEg LINE L1 952 1230 -4854 9 1298 286 206 14 14 chr6 93565436 93565505 -55951532 - RMER15 LTR ERVL -86 489 421 1 1298 234 270 22 11 chr6 93565749 93565839 -55951198 - Lx8 LINE L1 -342 7131 7041 1 1298 279 284 142 44 chr6 93566752 93566977 -55950060 + Lx8 LINE L1 7216 7462 -11 1 1298 338 264 28 9 chr6 93567296 93567403 -55949634 - MLT2B4 LTR ERVL -182 374 266 1 1298 587 142 9 0 chr6 93568606 93568712 -55948325 + CT-rich Low_complexity Low_complexity 2 108 0 1 1298 432 0 0 0 chr6 93569103 93569151 -55947886 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1298 355 328 83 6 chr6 93569190 93569371 -55947666 - MLT1A0 LTR MaLR -51 314 120 1 1298 273 312 31 23 chr6 93569622 93569750 -55947287 + MLT1A1 LTR MaLR 1 129 -279 1 1298 888 37 0 0 chr6 93570121 93570229 -55946808 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 1298 867 172 14 7 chr6 93570361 93570507 -55946530 + B1_Mur4 SINE Alu 3 149 -1 1 1298 236 245 48 113 chr6 93570770 93570894 -55946143 + Charlie4z DNA MER1_type 24 139 -28 1 1298 528 196 8 43 chr6 93571032 93571149 -55945888 + B1_Mur1 SINE Alu 34 146 -3 1 1298 31 44 0 0 chr6 93571150 93571195 -55945842 + AT_rich Low_complexity Low_complexity 1 45 0 1 1298 4463 107 19 50 chr6 93572873 93573648 -55943389 - RMER17A LTR ERVK 0 751 1 1 1298 286 323 93 0 chr6 93574408 93574569 -55942468 + L1MD1 LINE L1 6066 6241 -1 1 1298 239 333 37 47 chr6 93574745 93574852 -55942185 - MIR SINE MIR -145 117 12 1 1298 316 209 86 21 chr6 93575601 93575694 -55941343 - MLT1F2 LTR MaLR 0 560 462 1 1298 297 227 33 3 chr6 93576950 93577038 -55939999 - MTEa LTR MaLR -14 365 257 1 1298 587 310 75 0 chr6 93577356 93577556 -55939481 - MER20 DNA MER1_type -2 217 3 1 1298 237 321 35 9 chr6 93578543 93578656 -55938381 + L2 LINE L2 2501 2616 -803 1 1298 407 183 61 0 chr6 93578663 93578745 -55938292 + URR1B DNA MER1_type 1 87 -138 1 1298 657 226 97 11 chr6 93578953 93579128 -55937909 + B4A SINE B4 99 288 -4 1 1298 341 304 74 59 chr6 93579224 93579427 -55937610 - MER3 DNA MER1_type -1 208 3 1 1298 770 290 78 0 chr6 93579524 93579755 -55937282 + B4A SINE B4 5 253 -39 1 1298 494 114 0 11 chr6 93579786 93579875 -55937162 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1298 2457 130 17 58 chr6 93579883 93580299 -55936738 + RLTR9D LTR ERVK 1 399 -4 1 1298 232 130 36 18 chr6 93580448 93580503 -55936534 + CT-rich Low_complexity Low_complexity 1 56 0 1 1298 210 118 0 0 chr6 93581071 93581105 -55935932 + (TGAG)n Simple_repeat Simple_repeat 4 37 0 1 1298 542 66 0 0 chr6 93581183 93581259 -55935778 + B1_Mur4 SINE Alu 75 150 0 1 1298 669 193 0 0 chr6 93581283 93581418 -55935619 + GA-rich Low_complexity Low_complexity 3 137 0 1 1298 6072 204 51 39 chr6 93581512 93582956 -55934081 + Lx9 LINE L1 6161 7622 -22 1 1298 2630 148 24 2 chr6 93583060 93583472 -55933565 - MTC LTR MaLR 0 421 1 1 1298 469 260 123 29 chr6 93583908 93584177 -55932860 + MT2A LTR ERVL 224 554 0 1 1298 194 325 65 24 chr6 93584588 93584711 -55932326 + MIR SINE MIR 61 188 -74 1 1298 273 57 0 0 chr6 93584816 93584851 -55932186 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 1 1298 255 203 186 0 chr6 93584881 93584940 -55932097 - ID4 SINE ID -2 81 12 1 1298 247 320 47 20 chr6 93584953 93585103 -55931934 - MIR3 SINE MIR 0 208 55 1 1298 666 274 75 62 chr6 93585119 93585247 -55931790 + B4 SINE B4 5 136 -156 1 162 3428 49 0 2 chr6 93585247 93585655 -55931382 + MTB_Mm LTR MaLR 1 407 0 1 1299 666 274 75 62 chr6 93585655 93585752 -55931285 + B4 SINE B4 137 233 -59 1 1299 786 302 20 47 chr6 93585753 93586052 -55930985 + B4 SINE B4 2 292 0 1 1299 249 291 57 98 chr6 93587769 93587891 -55929146 - PB1D10 SINE Alu 0 117 1 1 1299 252 383 29 33 chr6 93587995 93588238 -55928799 - MLT1J1 LTR MaLR -124 320 79 1 1299 1439 228 46 19 chr6 93589277 93589644 -55927393 + MTE2b LTR MaLR 3 379 0 1 1299 1804 107 14 4 chr6 93589828 93590109 -55926928 + ORR1A4 LTR MaLR 1 284 -45 1 1299 3961 88 9 0 chr6 93590109 93590641 -55926396 - Lx3C LINE L1 -252 6724 6188 1 1299 1110 179 0 30 chr6 93590648 93590878 -55926159 + Lx3C LINE L1 6752 6974 -2 1 1299 345 100 0 0 chr6 93590879 93590929 -55926108 + (TAA)n Simple_repeat Simple_repeat 1 50 0 1 1299 403 121 15 0 chr6 93590929 93590995 -55926042 + ORR1A4 LTR MaLR 263 329 0 1 1299 546 273 0 0 chr6 93591093 93591221 -55925816 - MER20 DNA MER1_type -1 218 91 1 1299 1161 304 181 17 chr6 93591445 93592025 -55925012 - Lx8 LINE L1 -40 7433 6759 1 1299 2234 237 173 102 chr6 93592024 93593258 -55923779 - L1_Mur3 LINE L1 -117 5763 4443 1 1299 1186 275 21 3 chr6 93593301 93593658 -55923379 - L1_Mur3 LINE L1 -2085 4061 3661 1 1299 187 194 0 46 chr6 93593977 93594042 -55922995 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 1 1299 445 356 35 24 chr6 93594090 93594378 -55922659 - B4A SINE B4 0 292 2 1 1299 507 271 45 55 chr6 93594549 93594748 -55922289 - B3A SINE B2 0 198 2 1 1299 198 0 0 0 chr6 93595275 93595297 -55921740 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1299 30 0 0 0 chr6 93595304 93595334 -55921703 + AT_rich Low_complexity Low_complexity 1 30 0 1 1299 3820 139 26 17 chr6 93595379 93596031 -55921006 - Lx LINE L1 -1 6653 5996 1 1299 25 0 0 0 chr6 93596556 93596581 -55920456 + AT_rich Low_complexity Low_complexity 1 25 0 1 1299 677 311 59 64 chr6 93597431 93597805 -55919232 - MTE2b LTR MaLR -7 372 1 1 1299 2127 166 25 17 chr6 93598209 93598613 -55918424 - MTB_Mm LTR MaLR 0 407 1 1 1299 284 274 68 42 chr6 93601079 93601197 -55915840 - L2a LINE L2 -17 3409 3289 1 1299 207 0 0 0 chr6 93601229 93601252 -55915785 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1299 1150 56 0 14 chr6 93601264 93601410 -55915627 - B1_Mus1 SINE Alu 0 148 5 1 1299 274 307 34 0 chr6 93601929 93602017 -55915020 - L2a LINE L2 -546 2873 2783 1 1299 345 339 131 16 chr6 93603072 93603255 -55913782 - MER58A DNA MER1_type -16 208 5 1 1299 349 333 88 46 chr6 93603551 93603790 -55913247 - MLT1H LTR MaLR -182 367 119 1 1299 369 0 0 0 chr6 93604567 93604608 -55912429 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1299 216 0 0 0 chr6 93604608 93604631 -55912406 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1299 782 253 30 159 chr6 93604636 93604970 -55912067 - MTD LTR MaLR -16 403 113 1 1299 1135 236 24 8 chr6 93605080 93605332 -55911705 - B4A SINE B4 -36 256 1 1 1299 241 378 6 84 chr6 93605927 93606106 -55910931 - LTR16C LTR ERVL -315 174 10 1 1299 623 261 130 15 chr6 93606148 93606409 -55910628 + B4A SINE B4 2 292 0 1 1299 261 0 0 0 chr6 93607175 93607204 -55909833 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1299 312 307 71 41 chr6 93607374 93607544 -55909493 - MER5B DNA MER1_type -3 175 1 1 1299 185 215 225 12 chr6 93608068 93608148 -55908889 + MIRb SINE MIR 142 238 -30 1 1299 524 248 17 0 chr6 93608239 93608356 -55908681 + B3 SINE B2 60 178 -38 1 1299 354 120 153 24 chr6 93608356 93608441 -55908596 + RMER1C Other Other 1120 1215 -127 1 1299 510 61 0 0 chr6 93608453 93608519 -55908518 + (CCCCCT)n Simple_repeat Simple_repeat 5 70 0 1 1299 578 176 90 22 chr6 93608519 93608653 -55908384 + RMER1C Other Other 1200 1342 0 1 1299 369 239 119 8 chr6 93608708 93608826 -55908211 + Lx9 LINE L1 6579 6709 -935 1 1299 312 123 15 15 chr6 93608899 93608965 -55908072 - Lx LINE L1 0 6654 6589 1 1299 365 0 22 0 chr6 93608984 93609029 -55908008 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 1 1299 1144 56 21 0 chr6 93609034 93609177 -55907860 - B1_Mm SINE Alu -1 146 1 1 1299 668 242 51 6 chr6 93609210 93609368 -55907669 + B3A SINE B2 1 165 -33 1 1299 207 0 0 0 chr6 93609433 93609456 -55907581 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1299 185 35 69 0 chr6 93610093 93610122 -55906915 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 1 1299 345 290 96 25 chr6 93610310 93610508 -55906529 - MER20 DNA MER1_type -5 214 3 1 1299 222 154 62 0 chr6 93612322 93612387 -55904650 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 1299 275 229 0 126 chr6 93612389 93612484 -55904553 - RMER1C Other Other -12 1330 1248 1 1299 287 236 69 75 chr6 93612401 93612530 -55904507 - Lx8 LINE L1 -2 7471 7336 1 1299 681 232 7 7 chr6 93612530 93612673 -55904364 - B1_Mus2 SINE Alu 0 147 5 1 1299 224 59 29 0 chr6 93612682 93612716 -55904321 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1 1299 287 236 69 75 chr6 93612716 93612750 -55904287 - Lx8 LINE L1 -141 7332 7299 1 1299 815 294 35 15 chr6 93612790 93612852 -55904185 + B4 SINE B4 6 66 -226 1 1299 204 40 0 0 chr6 93612852 93612877 -55904160 + (CATG)n Simple_repeat Simple_repeat 1 25 0 1 1299 815 294 35 15 chr6 93612877 93613073 -55903964 + B4 SINE B4 67 269 -23 1 1299 208 262 0 0 chr6 93613080 93613122 -55903915 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1299 243 0 0 0 chr6 93613122 93613149 -55903888 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1299 1458 243 14 31 chr6 93614152 93614504 -55902533 + Lx6 LINE L1 7109 7454 -6 1 1299 322 158 0 0 chr6 93615451 93615508 -55901529 - HAL1-3A_ME LINE L1 -826 2032 1976 1 1299 487 288 18 47 chr6 93615557 93615728 -55901309 - B4A SINE B4 -123 169 4 1 1299 607 224 33 20 chr6 93616016 93616166 -55900871 + B3A SINE B2 47 198 0 1 1299 463 238 91 0 chr6 93616785 93616928 -55900109 + MER5B DNA MER1_type 20 175 -3 1 1299 1874 129 43 93 chr6 93617616 93618182 -55898855 - RMER6D LTR ERVK 0 690 4 1 1299 456 105 0 0 chr6 93618510 93618586 -55898451 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1299 1123 282 97 50 chr6 93618719 93619431 -55897606 - L1MA6 LINE L1 -169 6015 5268 2 1299 1053 93 97 17 chr6 93619485 93619660 -55897377 - B2_Mm2 SINE B2 -2 193 5 2 1299 296 217 84 0 chr6 93619662 93619745 -55897292 - MTD LTR MaLR -56 363 274 2 1299 286 271 0 45 chr6 93619745 93619834 -55897203 - L1MA6 LINE L1 -925 5218 5134 2 1299 228 309 0 0 chr6 93620017 93620101 -55896936 - L1MA6 LINE L1 -2554 3589 3506 2 1299 472 128 16 10 chr6 93620079 93620164 -55896873 - Lx5 LINE L1 -735 6323 6216 2 1299 2298 169 71 31 chr6 93620157 93620319 -55896718 + Lx5 LINE L1 5708 5850 -1200 2 1299 1972 123 61 10 chr6 93620319 93620632 -55896405 + ORR1A4 LTR MaLR 1 329 0 2 1299 2298 162 76 25 chr6 93620632 93620976 -55896061 + Lx5 LINE L1 5851 6218 -832 2 1299 865 242 68 25 chr6 93620981 93621138 -55895899 + Lx7 LINE L1 7405 7574 -122 2 1299 663 13 0 0 chr6 93621138 93621214 -55895823 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 2 1299 865 242 68 25 chr6 93621214 93621336 -55895701 + Lx7 LINE L1 7575 7696 0 2 1299 180 0 0 0 chr6 93623634 93623654 -55893383 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1299 514 291 13 7 chr6 93625158 93625307 -55891730 - MER5A1 DNA MER1_type -16 150 1 2 1299 207 0 0 0 chr6 93625912 93625935 -55891102 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1299 221 175 0 0 chr6 93626752 93626792 -55890245 + T-rich Low_complexity Low_complexity 1 40 0 2 1299 361 274 52 11 chr6 93630304 93630434 -55886603 - MER58A DNA MER1_type -71 144 7 2 1299 202 188 0 0 chr6 93630905 93630937 -55886100 + polypurine Low_complexity Low_complexity 2 33 0 2 1299 208 49 73 0 chr6 93631133 93631174 -55885863 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1299 23 54 0 0 chr6 93632033 93632070 -55884967 + AT_rich Low_complexity Low_complexity 1 37 0 2 1299 220 0 27 54 chr6 93632312 93632349 -55884688 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1299 221 167 106 0 chr6 93632482 93632548 -55884489 + A-rich Low_complexity Low_complexity 2 74 0 2 1299 186 320 82 10 chr6 93633246 93633344 -55883693 - L2a LINE L2 -101 3325 3221 2 1299 446 301 24 77 chr6 93634905 93635114 -55881923 - RMER30 DNA MER1_type 0 202 5 2 1299 24 0 0 0 chr6 93636107 93636131 -55880906 + AT_rich Low_complexity Low_complexity 1 24 0 2 1299 246 333 0 0 chr6 93637883 93637964 -55879073 - Tigger16b DNA Tigger -191 146 66 2 1299 246 337 119 25 chr6 93638698 93638899 -55878138 + MIR SINE MIR 13 232 -30 2 1299 315 261 25 25 chr6 93639723 93639845 -55877192 - MIR SINE MIR -63 145 24 2 1299 500 183 38 9 chr6 93641334 93641439 -55875598 + PB1D7 SINE Alu 12 119 -1 2 1299 621 72 0 0 chr6 93642125 93642208 -55874829 + (TCCA)n Simple_repeat Simple_repeat 3 85 0 2 1299 306 322 11 0 chr6 93643122 93643212 -55873825 - MER20 DNA MER1_type -25 194 104 2 1299 202 54 108 0 chr6 93643421 93643458 -55873579 + A-rich Low_complexity Low_complexity 2 42 0 2 1299 216 111 0 0 chr6 93643518 93643554 -55873483 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1299 312 176 0 0 chr6 93643855 93643923 -55873114 + GA-rich Low_complexity Low_complexity 1 68 0 2 1299 549 0 0 0 chr6 93643926 93643987 -55873050 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2 1299 641 142 109 22 chr6 93645196 93645333 -55871704 - B1_Mur4 SINE Alu -1 149 1 2 1299 225 289 0 0 chr6 93647301 93647353 -55869684 + (CCG)n Simple_repeat Simple_repeat 2 53 0 2 1299 216 0 0 0 chr6 93647561 93647585 -55869452 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1299 266 192 0 0 chr6 93649908 93649960 -55867077 - L2b LINE L2 -3 3372 3321 2 1299 291 286 28 28 chr6 93650449 93650557 -55866480 + MIRc SINE MIR 45 152 -116 2 1299 423 0 0 0 chr6 93650971 93651018 -55866019 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1299 279 0 0 0 chr6 93651088 93651119 -55865918 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2 1299 21 0 0 0 chr6 93651855 93651876 -55865161 + AT_rich Low_complexity Low_complexity 1 21 0 2 1299 372 217 0 0 chr6 93652962 93653054 -55863983 + (TA)n Simple_repeat Simple_repeat 1 92 0 2 1299 212 0 36 0 chr6 93653358 93653386 -55863651 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1299 22 0 0 0 chr6 93655521 93655543 -55861494 + AT_rich Low_complexity Low_complexity 1 22 0 2 1299 290 182 15 0 chr6 93659200 93659266 -55857771 + (TG)n Simple_repeat Simple_repeat 1 67 0 2 1299 559 293 30 87 chr6 93660635 93660968 -55856069 + ORR1E LTR MaLR 18 331 -28 2 1299 381 22 0 0 chr6 93661677 93661723 -55855314 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1299 1284 20 0 0 chr6 93661740 93661887 -55855150 + B1_Mm SINE Alu 1 147 0 2 1299 225 0 0 0 chr6 93661892 93661917 -55855120 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 1299 339 25 0 0 chr6 93661935 93661975 -55855062 + (CAAG)n Simple_repeat Simple_repeat 2 41 0 2 1299 407 202 36 0 chr6 93661976 93662060 -55854977 - B1F1 SINE Alu -52 97 11 2 1299 269 323 70 10 chr6 93661983 93662083 -55854954 - B4 SINE B4 -113 179 74 2 1299 270 0 0 0 chr6 93664727 93664757 -55852280 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 1299 387 0 0 0 chr6 93668303 93668346 -55848691 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1299 314 244 0 58 chr6 93671341 93671428 -55845609 - ID4 SINE ID 0 83 2 2 1299 272 304 137 0 chr6 93671442 93671544 -55845493 - PB1D10 SINE Alu -1 116 1 2 1299 225 188 0 0 chr6 93673819 93673867 -55843170 + ID4 SINE ID 2 49 -34 2 1299 1531 75 0 0 chr6 93673947 93674147 -55842890 - L1_Mus1 LINE L1 -1 6566 6367 2 1299 4016 38 0 0 chr6 93675187 93675657 -55841380 + L1Md_T LINE L1 6113 6582 0 2 1299 207 0 0 0 chr6 93675768 93675791 -55841246 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1299 233 159 43 14 chr6 93678224 93678294 -55838743 + A-rich Low_complexity Low_complexity 3 74 0 2 1299 1581 159 30 43 chr6 93680537 93680866 -55836171 - Lx7 LINE L1 -3 7693 7369 2 1299 1914 217 230 29 chr6 93680994 93681745 -55835292 + RMER19B LTR ERVK 1 902 0 2 1299 1009 132 392 47 chr6 93681806 93682186 -55834851 + RLTR17 LTR ERVK 99 609 -83 2 1299 297 0 0 0 chr6 93682279 93682312 -55834725 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1299 760 295 67 42 chr6 93683266 93683549 -55833488 + B4 SINE B4 3 292 0 2 1299 289 299 76 62 chr6 93684309 93684534 -55832503 - MER112 DNA MER1_type -32 229 2 2 1299 193 322 157 7 chr6 93684602 93684755 -55832282 + L2 LINE L2 2406 2581 -838 2 1299 579 241 52 123 chr6 93684824 93685272 -55831765 + MTD LTR MaLR 18 421 0 2 1299 243 268 42 0 chr6 93685346 93685417 -55831620 + MER58B DNA MER1_type 267 340 -1 2 1299 933 237 90 40 chr6 93686062 93686339 -55830698 + B4 SINE B4 2 292 0 2 1299 417 265 20 0 chr6 93687021 93687123 -55829914 - PB1D9 SINE Alu -7 113 10 2 1299 22 0 0 0 chr6 93687136 93687158 -55829879 + AT_rich Low_complexity Low_complexity 1 22 0 2 1299 754 230 71 0 chr6 93687158 93687354 -55829683 - B3 SINE B2 -6 210 1 2 1299 431 304 30 54 chr6 93687378 93687545 -55829492 - RSINE1 SINE B4 0 165 3 2 1299 312 27 0 0 chr6 93687576 93687613 -55829424 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1299 766 228 25 25 chr6 93687624 93687822 -55829215 + MTD LTR MaLR 6 203 -216 2 1299 529 248 118 26 chr6 93687833 93687986 -55829051 + B3 SINE B2 43 209 -7 2 1299 712 162 172 39 chr6 93688016 93688196 -55828841 + MTD LTR MaLR 201 404 -15 2 1299 221 333 0 0 chr6 93688687 93688765 -55828272 + MIRm SINE MIR 24 101 -175 2 1299 188 293 17 0 chr6 93689007 93689065 -55827972 - L2a LINE L2 -19 3407 3349 2 1299 348 298 81 0 chr6 93689113 93689237 -55827800 + Tigger7 DNA MER2_type 10 143 -2348 2 1299 203 179 15 0 chr6 93690068 93690135 -55826902 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1299 197 132 26 0 chr6 93690360 93690398 -55826639 + C-rich Low_complexity Low_complexity 1 39 0 2 1299 247 273 164 20 chr6 93690415 93690561 -55826476 + MIR SINE MIR 7 173 -89 2 1299 492 62 0 0 chr6 93691770 93691834 -55825203 + (TTCTC)n Simple_repeat Simple_repeat 1 64 0 2 1299 787 70 9 9 chr6 93691835 93691951 -55825086 + (TCC)n Simple_repeat Simple_repeat 1 116 0 2 1299 279 0 0 0 chr6 93692230 93692261 -55824776 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1299 811 114 0 84 chr6 93694276 93694419 -55822618 - B1_Mur2 SINE Alu 0 149 19 2 1299 281 262 0 23 chr6 93695231 93695317 -55821720 + BC1_Mm scRNA scRNA 3 86 -66 2 1299 231 305 142 9 chr6 93696238 93696344 -55820693 - MER34 LTR ERV1 0 542 423 2 1299 253 231 0 50 chr6 93696563 93696648 -55820389 - B1F SINE Alu -7 142 34 2 1299 231 306 70 26 chr6 93696641 93696755 -55820282 + MER34 LTR ERV1 402 520 -22 2 1299 811 239 11 48 chr6 93697502 93697691 -55819346 + B3A SINE B2 1 182 -16 2 1299 558 230 51 51 chr6 93697793 93697949 -55819088 - ID_B1 SINE B4 -5 219 64 2 1299 266 273 12 38 chr6 93698713 93698793 -55818244 - B4 SINE B4 0 292 215 2 1299 22 0 0 0 chr6 93698793 93698815 -55818222 + AT_rich Low_complexity Low_complexity 1 22 0 2 1299 2893 37 11 3 chr6 93698815 93699168 -55817869 - L1Md_F3 LINE L1 -2 6582 6227 2 1299 751 312 0 13 chr6 93699168 93699395 -55817642 - B4 SINE B4 -64 228 5 2 1299 602 294 57 57 chr6 93699411 93699779 -55817258 + Lx9 LINE L1 6172 6569 -1075 2 1299 1528 297 56 30 chr6 93699788 93700396 -55816641 + Lx9 LINE L1 6868 7491 -153 2 1299 234 208 0 0 chr6 93700524 93700577 -55816460 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 2 1299 409 168 24 0 chr6 93700734 93700859 -55816178 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 2 1299 207 0 0 0 chr6 93700880 93700903 -55816134 + (TCTA)n Simple_repeat Simple_repeat 3 25 0 2 1299 337 319 45 40 chr6 93702197 93702396 -55814641 + MER3 DNA MER1_type 5 204 -5 2 1299 227 328 115 33 chr6 93702501 93702684 -55814353 + MIR SINE MIR 63 260 -2 2 1299 514 246 14 14 chr6 93703121 93703261 -55813776 + B1_Mur1 SINE Alu 5 144 -5 3 1299 212 0 36 0 chr6 93703272 93703300 -55813737 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1299 477 34 0 0 chr6 93703552 93703611 -55813426 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1299 627 51 0 0 chr6 93704432 93704511 -55812526 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 3 1299 259 322 144 70 chr6 93704542 93704729 -55812308 + MER20 DNA MER1_type 11 211 -8 3 1299 408 237 43 0 chr6 93704804 93704897 -55812140 + RSINE1 SINE B4 48 144 -21 3 1299 1940 125 44 19 chr6 93705199 93705517 -55811520 + ORR1A4 LTR MaLR 1 326 -3 3 1299 486 0 0 0 chr6 93705571 93705625 -55811412 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1299 24 32 0 0 chr6 93705992 93706023 -55811014 + AT_rich Low_complexity Low_complexity 1 31 0 3 1299 475 118 0 0 chr6 93706191 93706267 -55810770 - B1_Mus2 SINE Alu 0 147 72 3 1299 415 256 168 0 chr6 93706266 93706457 -55810580 + MER58B DNA MER1_type 80 302 -39 3 1299 66 50 0 0 chr6 93706603 93706704 -55810333 + AT_rich Low_complexity Low_complexity 1 101 0 3 1299 1142 56 7 0 chr6 93707119 93707262 -55809775 + B1_Mus1 SINE Alu 5 148 0 3 1299 21 0 0 0 chr6 93707262 93707283 -55809754 + AT_rich Low_complexity Low_complexity 1 21 0 3 1299 209 179 0 0 chr6 93707654 93707693 -55809344 + (CTG)n Simple_repeat Simple_repeat 2 40 0 3 1299 533 268 12 25 chr6 93707997 93708158 -55808879 - Tigger7 DNA MER2_type -10 2481 2323 3 1299 787 341 24 49 chr6 93708203 93708573 -55808464 - Tigger7 DNA MER2_type -2093 398 38 3 1299 265 250 0 38 chr6 93709162 93709241 -55807796 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 3 1299 267 31 0 0 chr6 93711287 93711319 -55805718 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1299 2671 182 88 28 chr6 93711953 93712587 -55804450 - Lx9 LINE L1 -3 7641 6970 3 1299 13884 220 68 45 chr6 93712616 93715932 -55801105 - L1_Rod LINE L1 -1 5846 2449 3 1299 1364 86 0 16 chr6 93715932 93716122 -55800915 + B2_Mm2 SINE B2 3 189 -6 3 162 13884 220 68 45 chr6 93716122 93716904 -55800133 - L1_Rod LINE L1 -3399 2448 1653 3 1300 992 144 0 6 chr6 93717109 93717283 -55799754 + CT-rich Low_complexity Low_complexity 3 175 0 3 1300 195 42 0 0 chr6 93717856 93717880 -55799157 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1300 261 0 0 0 chr6 93717936 93717965 -55799072 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1300 303 28 0 0 chr6 93718538 93718574 -55798463 + (TATG)n Simple_repeat Simple_repeat 3 38 0 3 1300 306 0 0 0 chr6 93719631 93719665 -55797372 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1300 212 231 45 27 chr6 93721231 93721342 -55795695 + (CAGAG)n Simple_repeat Simple_repeat 2 114 0 3 1300 218 182 54 18 chr6 93721243 93721299 -55795738 + (CAGGG)n Simple_repeat Simple_repeat 2 59 0 3 1300 183 203 47 0 chr6 93722766 93722830 -55794207 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 1300 444 333 8 0 chr6 93724228 93724351 -55792686 - RSINE1 SINE B4 -7 158 35 3 1300 250 322 0 0 chr6 93724432 93724491 -55792546 + G-rich Low_complexity Low_complexity 5 63 0 3 1300 410 289 65 65 chr6 93725068 93725268 -55791769 - MIR SINE MIR -57 205 6 3 1300 1153 254 130 8 chr6 93725334 93725703 -55791334 - MTD LTR MaLR 0 419 6 3 1300 253 104 25 38 chr6 93725703 93725783 -55791254 + (CAAA)n Simple_repeat Simple_repeat 3 81 0 3 1300 4172 248 48 74 chr6 93725795 93726064 -55790973 - MTD-int LTR MaLR 0 1258 1011 3 1300 2729 76 54 0 chr6 93726064 93726434 -55790603 + L1_Mus3 LINE L1 6244 6633 -5 3 1300 4172 248 48 74 chr6 93726434 93727454 -55789583 - MTD-int LTR MaLR -248 1010 2 3 1300 571 164 270 2 chr6 93727455 93727603 -55789434 - MTD LTR MaLR -14 405 232 3 1300 257 333 10 0 chr6 93727639 93727741 -55789296 - L1MD2 LINE L1 -13 6346 6244 3 1300 245 146 102 20 chr6 93727871 93727920 -55789117 - PB1 SINE Alu 0 127 75 3 1300 588 257 92 4 chr6 93728106 93728344 -55788693 - L1MDa LINE L1 -2523 4014 3756 3 1300 459 0 0 0 chr6 93728500 93728551 -55788486 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1300 987 231 25 0 chr6 93728585 93728788 -55788249 - B3 SINE B2 0 216 9 3 1300 298 277 91 14 chr6 93728803 93728946 -55788091 - L1MDa LINE L1 -3050 3487 3334 3 1300 231 259 84 24 chr6 93728969 93729052 -55787985 + PB1D7 SINE Alu 33 120 0 3 1300 309 307 62 49 chr6 93729111 93729255 -55787782 - L1MDa LINE L1 -3764 2773 2628 3 1300 2518 157 7 19 chr6 93729416 93729837 -55787200 - MTC LTR MaLR 0 421 6 3 1300 323 253 36 0 chr6 93730051 93730134 -55786903 - L1MDa LINE L1 -4470 2163 2078 3 1300 768 145 285 0 chr6 93730337 93730509 -55786528 - URR1A DNA MER1_type -5 221 1 3 1300 1240 225 57 54 chr6 93730604 93730956 -55786081 + ORR1E LTR MaLR 6 358 -1 3 1300 672 278 104 90 chr6 93730956 93731449 -55785588 - L1MDa LINE L1 -4937 1696 1203 3 1300 405 321 0 0 chr6 93731449 93731555 -55785482 - PB1D10 SINE Alu -11 106 1 3 1300 672 278 104 90 chr6 93731555 93731674 -55785363 - L1MDa LINE L1 -5431 1202 1076 3 1300 296 299 0 13 chr6 93731710 93731788 -55785249 - ID4 SINE ID -5 78 2 3 1300 1281 41 7 0 chr6 93731828 93731973 -55785064 + B1_Mm SINE Alu 2 147 0 3 1300 204 40 0 0 chr6 93732023 93732048 -55784989 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3 1300 266 281 73 24 chr6 93732123 93732247 -55784790 - L1MDa LINE L1 -5532 1101 972 3 1300 260 369 41 0 chr6 93732444 93732566 -55784471 - L1MDa LINE L1 -5820 813 687 3 1300 292 326 62 42 chr6 93732692 93732884 -55784153 - L1MDa LINE L1 -6185 448 253 3 1300 445 292 38 15 chr6 93733184 93733316 -55783721 - L1MDa LINE L1 -6300 333 199 3 1300 306 211 8 24 chr6 93733611 93733737 -55783300 + (TATG)n Simple_repeat Simple_repeat 2 125 0 3 1300 265 329 14 0 chr6 93733737 93733807 -55783230 - ID4 SINE ID -10 73 3 3 1300 203 191 134 14 chr6 93734271 93734375 -55782662 - MIRm SINE MIR -88 174 64 3 1300 528 351 52 14 chr6 93735991 93736277 -55780760 - Lx8 LINE L1 -233 7240 6944 3 1300 745 211 70 30 chr6 93736327 93736527 -55780510 + L1_Mur3 LINE L1 3675 3882 -1998 3 1300 357 125 0 0 chr6 93736527 93736583 -55780454 + (GGA)n Simple_repeat Simple_repeat 2 57 0 3 1300 213 371 14 0 chr6 93736717 93736787 -55780250 + ID4_ SINE ID 3 73 -10 3 1300 1852 193 30 120 chr6 93737836 93738045 -55778992 - MTD LTR MaLR 0 419 202 3 1300 189 0 0 0 chr6 93738045 93738066 -55778971 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1300 1852 193 30 120 chr6 93738066 93738108 -55778929 - MTD LTR MaLR -218 201 196 3 1300 420 20 0 0 chr6 93738108 93738157 -55778880 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1300 1852 193 30 120 chr6 93738157 93738364 -55778673 - MTD LTR MaLR -224 195 1 3 1300 249 303 45 0 chr6 93739893 93739959 -55777078 - ID4 SINE ID -11 72 4 3 1300 203 204 0 39 chr6 93741566 93741617 -55775420 - L3 LINE CR1 -868 3621 3573 3 1300 750 326 32 42 chr6 93743329 93743614 -55773423 - B4 SINE B4 -6 286 5 3 1300 407 215 0 12 chr6 93743765 93743845 -55773192 + U6 snRNA snRNA 1 79 -28 3 1300 396 0 0 0 chr6 93743914 93743958 -55773079 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1300 2586 296 85 49 chr6 93743958 93745056 -55771981 + Lx9 LINE L1 6343 7479 -165 3 1300 701 250 55 15 chr6 93745750 93745949 -55771088 - B3 SINE B2 -4 212 6 3 1300 371 270 45 39 chr6 93745995 93746012 -55771025 + ID_B1 SINE B4 70 223 0 3 1300 746 127 34 0 chr6 93746012 93746148 -55770889 + B1_Mus2 SINE Alu 1 148 0 3 1300 514 231 97 0 chr6 93746244 93746378 -55770659 + B3 SINE B2 13 159 -57 3 1300 363 44 0 0 chr6 93746485 93746530 -55770507 + (TCC)n Simple_repeat Simple_repeat 3 47 0 3 1300 186 43 0 0 chr6 93746618 93746641 -55770396 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 3 1300 1828 127 0 25 chr6 93747475 93747758 -55769279 + Lx4A LINE L1 6536 6811 -247 3 1300 822 105 52 8 chr6 93747767 93747901 -55769136 + Lx4A LINE L1 6911 7050 -8 3 1300 208 157 19 38 chr6 93747979 93748032 -55769005 + A-rich Low_complexity Low_complexity 6 57 0 3 1300 1318 95 50 0 chr6 93748770 93748949 -55768088 + B2_Mm2 SINE B2 2 189 -6 3 1300 1906 111 101 60 chr6 93749080 93749396 -55767641 + ORR1A4 LTR MaLR 1 329 0 3 1300 1555 212 79 52 chr6 93749397 93749763 -55767274 - MTD LTR MaLR 0 419 33 3 1300 1239 91 215 0 chr6 93749763 93749949 -55767088 - URR1A DNA MER1_type 0 226 1 3 1300 1555 212 79 52 chr6 93749949 93749989 -55767048 - MTD LTR MaLR -387 32 2 3 1300 186 150 0 0 chr6 93750746 93750786 -55766251 + (CAAGG)n Simple_repeat Simple_repeat 3 42 0 3 1300 339 271 0 0 chr6 93753375 93753445 -55763592 - PB1D10 SINE Alu 0 117 48 3 1300 226 301 145 60 chr6 93753844 93754010 -55763027 - B4 SINE B4 -41 251 72 3 1300 252 77 0 0 chr6 93754246 93754285 -55762752 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1300 707 254 0 42 chr6 93754291 93754435 -55762602 - B3A SINE B2 -60 138 1 3 1300 571 304 84 29 chr6 93754440 93754786 -55762251 + Lx8 LINE L1 7079 7443 -30 3 1300 1168 84 162 0 chr6 93754887 93755054 -55761983 + B2_Mm2 SINE B2 1 194 -1 3 1300 32 43 0 0 chr6 93755102 93755148 -55761889 + AT_rich Low_complexity Low_complexity 1 46 0 3 1300 356 246 0 0 chr6 93755167 93755236 -55761801 + B3A SINE B2 39 107 -91 3 1300 230 296 48 67 chr6 93755847 93755893 -55761144 - ORR1E LTR MaLR -201 158 113 3 1300 1323 128 16 0 chr6 93755893 93756080 -55760957 - B2_Mm2 SINE B2 -3 192 3 3 1300 230 296 48 67 chr6 93756080 93756138 -55760899 - ORR1E LTR MaLR -247 112 56 3 1300 243 0 0 0 chr6 93756402 93756429 -55760608 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1300 255 279 155 0 chr6 93756570 93756699 -55760338 - MIRb SINE MIR -34 234 86 3 1300 355 257 66 9 chr6 93757808 93757914 -55759123 + PB1D10 SINE Alu 6 117 0 3 1300 1397 307 189 6 chr6 93758243 93758940 -55758097 - Lx8 LINE L1 -137 7336 6512 3 1300 1478 283 64 41 chr6 93758951 93759648 -55757389 - Lx8 LINE L1 -1037 6436 5722 3 1300 1691 295 172 36 chr6 93759678 93759943 -55757094 - L1_Mur3 LINE L1 -2466 3381 3113 3 1300 1949 224 29 10 chr6 93759943 93760354 -55756683 - MTD LTR MaLR 0 419 1 3 1300 2321 267 149 44 chr6 93760354 93761487 -55755550 - L1_Mur3 LINE L1 -2735 3112 1707 3 1300 333 0 0 0 chr6 93761487 93761524 -55755513 + (TCC)n Simple_repeat Simple_repeat 1 37 0 3 1300 2321 255 140 47 chr6 93761524 93762004 -55755033 - L1_Mur3 LINE L1 -4174 1706 1208 3 1300 238 301 75 20 chr6 93762028 93762228 -55754809 - L1_Rod LINE L1 -6481 691 481 3 1300 216 0 0 0 chr6 93762242 93762266 -55754771 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1300 391 200 0 24 chr6 93762590 93762672 -55754365 + Lx7 LINE L1 7617 7696 0 3 1300 1019 107 147 12 chr6 93762686 93762856 -55754181 + B2_Mm2 SINE B2 2 194 -1 3 1300 459 180 0 0 chr6 93762856 93763015 -55754022 + GA-rich Low_complexity Low_complexity 1 159 0 3 1300 290 302 33 8 chr6 93763656 93763776 -55753261 + L1MA5 LINE L1 5357 5479 -818 3 1300 480 265 59 41 chr6 93763796 93763965 -55753072 + L1MA5 LINE L1 5570 5741 -559 3 1300 607 218 8 0 chr6 93764060 93764184 -55752853 + ID_B1 SINE B4 98 222 -2 4 1300 797 297 59 36 chr6 93764224 93764580 -55752457 + L1MA5 LINE L1 5833 6196 -104 3 1300 233 152 164 33 chr6 93764659 93764720 -55752317 + L1MA5 LINE L1 6206 6274 -26 3 1300 200 335 114 20 chr6 93767134 93767326 -55749711 + MIR SINE MIR 27 232 -36 4 1300 402 100 0 0 chr6 93768006 93768066 -55748971 + (GGGA)n Simple_repeat Simple_repeat 4 63 0 4 1300 893 242 14 19 chr6 93768245 93768456 -55748581 + B3 SINE B2 2 211 -5 4 1300 189 0 0 0 chr6 93768853 93768874 -55748163 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 4 1300 198 341 144 43 chr6 93768970 93769463 -55747574 - L2 LINE L2 -769 2650 2108 4 1300 198 0 0 0 chr6 93769620 93769642 -55747395 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 4 1300 202 320 27 80 chr6 93770558 93770670 -55746367 - MIR SINE MIR -73 189 84 4 1300 266 302 11 23 chr6 93770719 93770807 -55746230 + MER3 DNA MER1_type 5 91 -118 4 1300 1036 293 39 21 chr6 93770820 93771106 -55745931 + B4A SINE B4 2 292 0 4 1300 728 288 75 61 chr6 93773120 93773211 -55743826 + L1ME1 LINE L1 5581 5674 -505 4 1300 474 33 0 0 chr6 93773211 93773271 -55743766 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1300 728 288 75 61 chr6 93773271 93773541 -55743496 + L1ME1 LINE L1 5675 5947 -232 4 1300 899 186 40 6 chr6 93773718 93773891 -55743146 - MTE2b LTR MaLR -1 378 200 4 1300 325 225 42 0 chr6 93773879 93773950 -55743087 - MTEb LTR MaLR -106 273 200 4 1300 328 214 43 0 chr6 93773939 93774009 -55743028 - MTEb LTR MaLR -107 272 200 4 1300 331 250 32 37 chr6 93773997 93774127 -55742910 - MTE2a LTR MaLR -87 292 200 4 1300 333 211 42 0 chr6 93774115 93774186 -55742851 - MTEb LTR MaLR -106 273 200 4 1300 708 260 61 71 chr6 93774174 93774439 -55742598 - MTE2b LTR MaLR -106 273 36 4 1300 357 319 62 109 chr6 93774642 93774853 -55742184 - MLT1A LTR MaLR -127 247 47 4 1300 635 306 38 22 chr6 93775941 93776255 -55740782 + L1MA4 LINE L1 5614 5932 -368 4 1300 341 321 78 14 chr6 93776470 93776612 -55740425 - MIRb SINE MIR -58 210 60 4 1300 644 230 62 6 chr6 93777346 93777508 -55739529 + L1MB8 LINE L1 6006 6176 -2 4 1300 493 308 20 7 chr6 93777522 93777669 -55739368 + B1F SINE Alu 1 149 0 4 1300 261 0 0 0 chr6 93779658 93779687 -55737350 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 4 1300 287 340 19 50 chr6 93780953 93781114 -55735923 - RSINE1 SINE B4 -6 159 4 4 1300 238 287 53 30 chr6 93781129 93781262 -55735775 + L2a LINE L2 3077 3212 -214 4 1300 491 297 46 37 chr6 93781359 93781576 -55735461 + B4A SINE B4 66 284 -8 4 1300 297 0 0 0 chr6 93781576 93781609 -55735428 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1300 505 265 43 12 chr6 93782033 93782197 -55734840 + Tigger7 DNA MER2_type 436 604 -1887 4 1300 532 263 193 0 chr6 93782191 93782419 -55734618 + Tigger7 DNA MER2_type 2211 2482 -9 4 1300 199 373 17 8 chr6 93782493 93782612 -55734425 + L2a LINE L2 3305 3424 -2 4 1300 258 32 0 0 chr6 93783264 93783295 -55733742 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1300 266 283 313 0 chr6 93783515 93783614 -55733423 + B1_Mur1 SINE Alu 2 131 -18 4 1300 204 40 0 0 chr6 93783622 93783647 -55733390 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1300 404 229 80 27 chr6 93783665 93783777 -55733260 + RSINE1 SINE B4 29 146 -19 4 1300 2808 19 2 82 chr6 93783817 93784229 -55732808 + RLTR10 LTR ERVK 1 379 -11 4 1300 880 243 9 40 chr6 93784251 93784436 -55732601 + ID_B1 SINE B4 2 182 -42 4 1300 2385 111 67 0 chr6 93784436 93784779 -55732258 + ORR1B2 LTR MaLR 1 366 -1 4 1300 880 243 9 40 chr6 93784779 93784816 -55732221 + ID_B1 SINE B4 183 217 -7 4 1300 321 256 0 13 chr6 93787590 93787665 -55729372 + B4A SINE B4 5 78 -214 4 1300 1020 264 158 6 chr6 93787665 93788027 -55729010 + MTD LTR MaLR 1 417 -2 4 1300 260 236 36 0 chr6 93788198 93788253 -55728784 + RSINE1 SINE B4 108 164 -1 4 1300 766 307 75 50 chr6 93789043 93789427 -55727610 - L1MB5 LINE L1 -149 6025 5632 4 1300 505 328 27 37 chr6 93789451 93789638 -55727399 + RMER30 DNA MER1_type 17 201 -1 4 1300 360 0 0 0 chr6 93789650 93789690 -55727347 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1300 187 295 16 0 chr6 93790553 93790614 -55726423 + L2 LINE L2 2389 2450 -969 4 1300 247 293 61 0 chr6 93790644 93790726 -55726311 + L1MD3 LINE L1 7895 7981 -14 4 1300 31 0 0 0 chr6 93790782 93790813 -55726224 + AT_rich Low_complexity Low_complexity 1 31 0 4 1300 254 289 26 0 chr6 93790837 93790913 -55726124 - MIR SINE MIR -165 97 20 4 1300 350 303 138 0 chr6 93791167 93791276 -55725761 + RSINE1 SINE B4 25 148 -17 4 1300 610 253 97 11 chr6 93791717 93791893 -55725144 + ID_B1 SINE B4 13 203 -21 4 1300 210 118 0 0 chr6 93792606 93792640 -55724397 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1300 1179 55 7 0 chr6 93792643 93792789 -55724248 - B1_Mm SINE Alu 0 147 1 4 1300 326 257 99 86 chr6 93793338 93793500 -55723537 + MLT1F1 LTR MaLR 346 509 -60 4 1300 783 281 46 5 chr6 93793587 93793805 -55723232 + B4A SINE B4 8 234 -58 4 1300 610 335 0 0 chr6 93793795 93793956 -55723081 + RSINE1 SINE B4 5 165 0 4 1300 257 213 0 0 chr6 93793959 93794006 -55723031 + B4A SINE B4 227 273 -19 4 1300 784 167 0 0 chr6 93794077 93794203 -55722834 + B3 SINE B2 2 127 -89 4 1300 180 77 0 0 chr6 93794248 93794274 -55722763 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 4 1300 378 0 0 0 chr6 93794761 93794803 -55722234 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1300 328 314 32 32 chr6 93795648 93795773 -55721264 + MamRep137 DNA TcMar? 176 300 -144 4 1300 29 28 0 0 chr6 93796210 93796246 -55720791 + AT_rich Low_complexity Low_complexity 1 36 0 4 1300 906 279 101 9 chr6 93796356 93796682 -55720355 - Tigger7 DNA MER2_type -2066 425 70 4 1300 234 277 24 12 chr6 93797559 93797643 -55719394 + GA-rich Low_complexity Low_complexity 1 85 0 4 1300 311 284 0 99 chr6 93797755 93797876 -55719161 - ID_B1 SINE B4 -40 184 76 4 1300 315 297 61 68 chr6 93800015 93800163 -55716874 - ID_B1 SINE B4 0 224 78 4 1300 845 250 37 14 chr6 93800342 93800557 -55716480 - ID_B1 SINE B4 -1 223 4 4 1300 2733 151 7 106 chr6 93800912 93801498 -55715539 + RLTR24 LTR ERV1 2 529 0 4 1300 180 0 0 0 chr6 93801572 93801592 -55715445 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1300 266 313 0 0 chr6 93801626 93801693 -55715344 + PB1D10 SINE Alu 43 109 -8 4 1300 217 100 50 0 chr6 93801896 93801936 -55715101 + PB1D10 SINE Alu 44 85 -32 4 1300 26 64 0 0 chr6 93802262 93802309 -55714728 + AT_rich Low_complexity Low_complexity 1 47 0 4 1300 516 192 0 0 chr6 93802357 93802461 -55714576 + (TA)n Simple_repeat Simple_repeat 2 105 0 4 1300 667 180 8 23 chr6 93802465 93802601 -55714436 + B1_Mur2 SINE Alu 6 148 -1 4 1300 382 342 49 0 chr6 93802821 93803046 -55713991 - MER90a LTR ERV1 -153 461 226 4 1300 2658 255 65 18 chr6 93803199 93803969 -55713068 + Lx9 LINE L1 6839 7644 0 4 1300 195 42 0 0 chr6 93804185 93804209 -55712828 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1300 243 0 0 0 chr6 93804922 93804949 -55712088 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 4 1300 495 45 0 0 chr6 93807844 93807910 -55709127 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1300 342 0 0 0 chr6 93808321 93808359 -55708678 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1300 408 20 0 0 chr6 93808663 93808712 -55708325 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1300 189 0 0 0 chr6 93809512 93809533 -55707504 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1300 509 207 32 65 chr6 93809924 93810048 -55706989 - B1F SINE Alu -6 143 24 4 1300 606 82 0 0 chr6 93810368 93810453 -55706584 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 1300 290 174 349 0 chr6 93810855 93810941 -55706096 - MTD LTR MaLR -108 311 196 4 1300 707 189 0 8 chr6 93810988 93811116 -55705921 - B1_Mur4 SINE Alu -8 142 16 4 1300 787 231 28 0 chr6 93811121 93811303 -55705734 - MTD LTR MaLR -215 204 18 4 1300 181 75 24 24 chr6 93811314 93811355 -55705682 + (CAAAAA)n Simple_repeat Simple_repeat 5 45 0 4 1300 304 216 76 43 chr6 93811475 93811567 -55705470 + ORR1D1 LTR MaLR 1 95 -279 4 1300 446 151 2 204 chr6 93811568 93811728 -55705309 + ORR1D1 LTR MaLR 241 374 0 4 1300 705 230 32 60 chr6 93811827 93812044 -55704993 + B3 SINE B2 4 214 -2 4 1300 315 156 80 40 chr6 93812646 93812746 -55704291 + L1MD3 LINE L1 7890 7993 -2 4 1300 180 0 0 0 chr6 93812863 93812883 -55704154 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1300 225 241 138 0 chr6 93813249 93813307 -55703730 + ID4 SINE ID 3 68 -15 4 1300 245 310 139 17 chr6 93813266 93813381 -55703656 + ID_B1 SINE B4 29 157 -67 4 1300 238 367 18 0 chr6 93813457 93813566 -55703471 + GA-rich Low_complexity Low_complexity 6 116 0 4 1300 264 294 11 0 chr6 93813912 93814004 -55703033 + B4A SINE B4 182 274 -18 4 1300 256 102 20 20 chr6 93814055 93814105 -55702932 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1300 872 214 58 10 chr6 93814282 93814490 -55702547 - ID_B1 SINE B4 -4 220 3 4 1300 351 0 0 0 chr6 93814758 93814797 -55702240 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1300 230 382 137 8 chr6 93815005 93815253 -55701784 + MLT1F1 LTR MaLR 5 284 -276 4 1300 313 355 25 19 chr6 93815267 93815425 -55701612 + MLT1F1 LTR MaLR 368 526 -43 4 1300 209 216 0 51 chr6 93816406 93816484 -55700553 + A-rich Low_complexity Low_complexity 2 75 0 4 1300 1349 160 22 145 chr6 93816581 93816940 -55700097 + ORR1B2 LTR MaLR 1 315 -52 4 1300 510 61 0 0 chr6 93818156 93818222 -55698815 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1300 1183 166 9 5 chr6 93819485 93819703 -55697334 - URR1A DNA MER1_type -7 219 1 4 1300 229 300 38 0 chr6 93819923 93820003 -55697034 - L1MA6 LINE L1 -37 6263 6181 4 1300 362 266 79 16 chr6 93820035 93820161 -55696876 - ID_B1 SINE B4 -8 216 83 4 1300 354 283 33 16 chr6 93820163 93820285 -55696752 - L1MA6 LINE L1 -128 6172 6049 4 1300 553 314 123 33 chr6 93820995 93821509 -55695528 - Tigger13a DNA MER2_type -69 702 143 5 1300 777 311 76 9 chr6 93821558 93821902 -55695135 + MLT1F LTR MaLR 121 487 -61 5 1300 237 291 28 106 chr6 93822031 93822173 -55694864 - L1M1 LINE L1 -725 5575 5445 5 1300 269 47 23 0 chr6 93822749 93822792 -55694245 - U2 snRNA snRNA -144 44 1 5 1300 214 273 29 43 chr6 93822929 93822998 -55694039 + ID4_ SINE ID 15 82 -1 5 1300 583 181 172 48 chr6 93823230 93823375 -55693662 + RSINE1 SINE B4 3 165 0 5 1300 258 281 68 11 chr6 93823419 93823516 -55693521 + B1F1 SINE Alu 1 102 -15 5 1300 1493 127 116 41 chr6 93823681 93824025 -55693012 + ORR1C2 LTR MaLR 1 370 -14 5 1300 500 279 35 14 chr6 93825627 93825769 -55691268 + B4A SINE B4 30 174 -118 5 1300 356 170 84 11 chr6 93825809 93825904 -55691133 - MTD LTR MaLR -24 395 294 5 1300 585 228 45 9 chr6 93825937 93826083 -55690954 - MTD LTR MaLR -258 142 3 5 1300 405 0 0 0 chr6 93826109 93826154 -55690883 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1300 226 253 0 60 chr6 93827111 93827195 -55689842 + A-rich Low_complexity Low_complexity 1 79 0 5 1300 901 139 0 21 chr6 93827712 93827852 -55689185 - B1_Mur4 SINE Alu -13 137 1 5 1300 414 0 0 0 chr6 93827898 93827944 -55689093 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1300 658 271 70 5 chr6 93828434 93828634 -55688403 + B4 SINE B4 80 292 0 5 1300 201 39 0 0 chr6 93828683 93828709 -55688328 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 5 1300 767 186 14 20 chr6 93828981 93829129 -55687908 + B1_Mur1 SINE Alu 1 147 -2 5 1300 326 340 65 8 chr6 93829249 93829495 -55687542 + L1MB2 LINE L1 5835 6094 -77 5 1300 699 227 57 29 chr6 93829542 93829751 -55687286 + B3 SINE B2 2 216 0 5 1300 608 221 71 18 chr6 93831527 93831697 -55685340 + MTEb LTR MaLR 1 179 -200 5 1300 326 218 22 54 chr6 93831714 93831806 -55685231 + MTEb LTR MaLR 277 365 -14 5 1300 857 167 188 32 chr6 93831962 93832148 -55684889 - B3 SINE B2 0 216 2 5 1300 668 197 0 0 chr6 93832418 93832540 -55684497 + B1_Mur4 SINE Alu 6 127 -23 5 1300 516 32 0 0 chr6 93832664 93832726 -55684311 + (TAA)n Simple_repeat Simple_repeat 3 64 0 5 1300 2407 166 40 17 chr6 93832862 93833340 -55683697 + RMER6A LTR ERVK 1 489 -267 5 1300 361 61 0 0 chr6 93833328 93833377 -55683660 - RMER6B LTR ERVK -412 49 1 5 1300 785 0 32 0 chr6 93833641 93833736 -55683301 + (GGAAA)n Simple_repeat Simple_repeat 4 101 0 5 1300 360 0 0 0 chr6 93834193 93834233 -55682804 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1300 22 35 0 0 chr6 93834236 93834265 -55682772 + AT_rich Low_complexity Low_complexity 1 29 0 5 1300 244 281 90 80 chr6 93834389 93834590 -55682447 + L1M4 LINE L1 4540 4742 -1404 5 1300 363 280 0 83 chr6 93834793 93834813 -55682224 + ID_B1 SINE B4 70 212 -12 5 1300 681 177 7 44 chr6 93834813 93834949 -55682088 + B1_Mur1 SINE Alu 7 137 -12 5 1300 288 0 0 0 chr6 93834967 93834999 -55682038 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1300 244 293 60 24 chr6 93835200 93835368 -55681669 + L1M4 LINE L1 5230 5403 -743 5 1300 397 243 203 7 chr6 93835433 93835586 -55681451 + B3A SINE B2 1 183 -15 5 1300 315 0 0 0 chr6 93835807 93835842 -55681195 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1300 1213 48 0 0 chr6 93835842 93835988 -55681049 - B1_Mm SINE Alu 0 147 2 5 1300 414 274 65 131 chr6 93835988 93836324 -55680713 + L1ME2 LINE L1 5632 5945 -219 5 1300 847 186 103 10 chr6 93836352 93836547 -55680490 + B3 SINE B2 1 213 -3 5 1300 311 234 91 0 chr6 93836679 93836756 -55680281 - PB1 SINE Alu -18 109 26 5 1300 271 319 95 0 chr6 93837653 93837769 -55679268 + L2a LINE L2 3300 3426 0 5 1300 531 0 0 0 chr6 93838009 93838068 -55678969 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1300 568 228 73 34 chr6 93838106 93838310 -55678727 - ORR1D1 LTR MaLR 0 374 163 5 1300 869 135 7 14 chr6 93838296 93838439 -55678598 + B1_Mus2 SINE Alu 5 146 -1 5 1300 958 197 16 11 chr6 93838455 93838645 -55678392 - ORR1D1 LTR MaLR -178 196 6 5 1300 835 243 47 24 chr6 93838764 93838975 -55678062 - B3 SINE B2 0 216 1 5 1300 289 236 85 53 chr6 93839150 93839244 -55677793 + MamRep137 DNA TcMar? 136 232 -212 5 1300 408 40 0 0 chr6 93839792 93839842 -55677195 + (GGA)n Simple_repeat Simple_repeat 1 50 0 5 1300 1596 123 14 69 chr6 93840792 93841080 -55675957 + ORR1A3 LTR MaLR 1 272 -54 5 1300 2372 80 0 9 chr6 93841070 93841397 -55675640 - MT2B LTR ERVL -277 324 1 5 1300 675 307 47 37 chr6 93841398 93841807 -55675230 + Lx8 LINE L1 5721 6133 -1563 5 1300 228 67 0 0 chr6 93841832 93841862 -55675175 + (TATG)n Simple_repeat Simple_repeat 3 32 0 5 1300 349 219 183 0 chr6 93841875 93842021 -55675016 + Lx8 LINE L1 6244 6420 -1053 5 1300 945 256 37 0 chr6 93842024 93842293 -55674744 + Lx9 LINE L1 7234 7512 -132 5 1300 37 0 0 0 chr6 93842432 93842469 -55674568 + AT_rich Low_complexity Low_complexity 1 37 0 5 1300 1385 291 106 79 chr6 93842469 93843302 -55673735 + Lx8 LINE L1 6617 7471 -2 5 1300 201 74 0 0 chr6 93843328 93843355 -55673682 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1300 735 197 21 0 chr6 93843533 93843675 -55673362 + B1_Mur1 SINE Alu 1 145 -4 5 1300 261 83 0 0 chr6 93843772 93843808 -55673229 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1300 662 184 14 14 chr6 93844846 93844984 -55672053 + B1_Mus2 SINE Alu 10 147 0 5 1300 480 35 0 0 chr6 93845239 93845297 -55671740 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1300 427 290 89 0 chr6 93846382 93846557 -55670480 + B3A SINE B2 1 191 -2 5 1300 317 298 60 64 chr6 93846543 93846776 -55670261 - MER33 DNA MER1_type -65 259 28 5 1301 4682 63 5 2 chr6 93848281 93848880 -55668157 - L1_Mus3 LINE L1 -4 6634 6034 5 1301 7310 112 6 18 chr6 93848880 93849967 -55667070 + L1_Mm LINE L1 4706 5780 -103 5 1301 226 250 148 50 chr6 93850205 93850306 -55666731 - MIR SINE MIR -66 142 32 5 1301 204 125 0 0 chr6 93850318 93850350 -55666687 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 5 1301 195 100 0 0 chr6 93850371 93850401 -55666636 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 5 1301 786 293 0 10 chr6 93850425 93850625 -55666412 - B3A SINE B2 0 198 1 5 1301 369 237 127 38 chr6 93850705 93850863 -55666174 + L1MC LINE L1 5302 5473 -871 5 1301 319 358 19 38 chr6 93850882 93851039 -55665998 + RSINE1 SINE B4 12 165 0 5 1301 432 192 0 0 chr6 93851350 93851450 -55665587 + PB1D9 SINE Alu 15 114 -6 5 1301 311 309 64 41 chr6 93851450 93851669 -55665368 + L1ME2 LINE L1 5475 5698 -481 5 1301 479 298 62 9 chr6 93851732 93852041 -55664996 + L1ME2 LINE L1 5710 6038 -141 5 1301 228 67 0 0 chr6 93852199 93852229 -55664808 + (CG)n Simple_repeat Simple_repeat 2 31 0 5 1301 234 0 0 0 chr6 93854814 93854840 -55662197 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 5 1301 762 73 0 0 chr6 93855835 93855944 -55661093 + B1_Mus2 SINE Alu 33 141 -6 5 1301 180 0 0 0 chr6 93855945 93855965 -55661072 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 5 1301 716 299 5 5 chr6 93856146 93856358 -55660679 + B4 SINE B4 3 214 -78 5 1301 2306 189 47 8 chr6 93856372 93856879 -55660158 + RLTR11A2 LTR ERVK 1 527 0 5 1301 348 64 0 0 chr6 93856956 93857003 -55660034 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1301 862 183 0 0 chr6 93857330 93857472 -55659565 + B1_Mus1 SINE Alu 1 142 -6 5 1301 360 64 0 0 chr6 93859798 93859845 -55657192 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 5 1301 222 37 0 0 chr6 93861082 93861109 -55655928 + (CCA)n Simple_repeat Simple_repeat 1 27 0 5 1301 369 145 0 0 chr6 93864193 93864255 -55652782 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1301 781 286 46 38 chr6 93864255 93864517 -55652520 - B4A SINE B4 -27 265 2 5 1301 191 88 29 0 chr6 93865474 93865508 -55651529 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 5 1301 441 121 121 0 chr6 93865508 93865591 -55651446 - B1_Mm SINE Alu -1 146 54 5 1301 309 26 0 0 chr6 93866176 93866214 -55650823 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 5 1301 238 301 217 17 chr6 93866909 93867024 -55650013 - B1F2 SINE Alu -9 140 3 5 1301 318 273 18 35 chr6 93867058 93867172 -55649865 - PB1D10 SINE Alu -3 114 3 5 1301 705 305 59 22 chr6 93867351 93867890 -55649147 + L1M4 LINE L1 5183 5745 -433 5 1301 288 332 139 10 chr6 93867896 93868097 -55648940 - MER2 DNA MER2_type -94 251 25 5 1301 261 0 0 0 chr6 93868145 93868174 -55648863 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1301 466 229 122 0 chr6 93868179 93868310 -55648727 - B1_Mus1 SINE Alu 0 148 2 5 1301 340 323 45 15 chr6 93868675 93868807 -55648230 + Lx6 LINE L1 7243 7378 -82 5 1301 261 0 21 64 chr6 93868828 93868875 -55648162 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 5 1301 244 349 78 94 chr6 93869086 93869447 -55647590 + ORR1E LTR MaLR 1 355 -4 5 1301 289 275 0 67 chr6 93869494 93869581 -55647456 - ID4_ SINE ID -56 96 15 5 1301 26 0 0 0 chr6 93869771 93869797 -55647240 + AT_rich Low_complexity Low_complexity 1 26 0 5 1301 336 327 59 67 chr6 93870013 93870252 -55646785 - MLT1A1 LTR MaLR -49 359 123 5 1301 227 183 83 0 chr6 93870280 93870340 -55646697 - MLT1A1 LTR MaLR -300 65 1 5 1301 216 0 0 0 chr6 93870352 93870376 -55646661 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1301 725 263 5 14 chr6 93870400 93870608 -55646429 + ID_B1 SINE B4 1 206 -18 5 1301 44 63 0 0 chr6 93870650 93870729 -55646308 + AT_rich Low_complexity Low_complexity 1 79 0 5 1301 610 216 22 15 chr6 93872887 93873023 -55644014 - B1_Mus2 SINE Alu -10 137 1 5 1301 881 274 75 28 chr6 93874116 93874368 -55642669 - B4 SINE B4 -28 264 1 5 1301 22 0 0 0 chr6 93874375 93874397 -55642640 + AT_rich Low_complexity Low_complexity 1 22 0 6 1301 1325 158 13 22 chr6 93874590 93874817 -55642220 - URR1B DNA MER1_type 0 225 1 6 1301 266 240 114 9 chr6 93875560 93875665 -55641372 + L1M5 LINE L1 5775 5890 -289 6 1301 1855 156 111 18 chr6 93876053 93876451 -55640586 - RMER10A LTR ERVL -4 438 4 6 1301 698 209 80 62 chr6 93876451 93876664 -55640373 - B4 SINE B4 -9 283 65 6 1301 618 82 0 0 chr6 93876994 93877079 -55639958 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 1301 626 290 42 58 chr6 93877079 93877339 -55639698 - B4A SINE B4 -23 269 14 6 1301 590 216 44 22 chr6 93878082 93878219 -55638818 - B1_Mur2 SINE Alu -9 140 1 6 1301 244 320 19 57 chr6 93878650 93878756 -55638281 - MTE2a LTR MaLR -35 344 243 6 1301 1159 82 0 0 chr6 93879902 93880049 -55636988 + B1_Mm SINE Alu 1 147 0 6 1301 752 91 215 0 chr6 93880511 93880632 -55636405 + B1_Mus2 SINE Alu 1 147 0 6 1301 405 58 0 0 chr6 93880632 93880684 -55636353 + (A)n Simple_repeat Simple_repeat 1 52 0 6 1301 228 320 31 39 chr6 93880687 93880817 -55636220 - L1MC4 LINE L1 -2 8040 7912 6 1301 329 233 0 11 chr6 93881159 93881250 -55635787 + (TG)n Simple_repeat Simple_repeat 1 90 0 6 1301 415 270 57 57 chr6 93881265 93881422 -55635615 - RSINE1 SINE B4 -4 161 5 6 1301 2206 278 41 42 chr6 93881425 93882278 -55634759 + RCHARR1 DNA MER1_type 2 853 -121 6 1301 774 191 29 0 chr6 93882278 93882414 -55634623 + B1_Mur4 SINE Alu 1 140 -10 6 1301 457 246 15 0 chr6 93882434 93882568 -55634469 + RCHARR1 DNA MER1_type 839 974 0 6 1301 500 282 14 7 chr6 93882635 93882778 -55634259 - B3A SINE B2 -54 144 1 6 1301 424 277 18 9 chr6 93882924 93883037 -55634000 - ID_B1 SINE B4 0 224 111 6 1301 257 301 60 8 chr6 93883051 93883185 -55633852 + MTEb LTR MaLR 1 141 -238 6 1301 226 336 71 13 chr6 93883185 93883205 -55633832 + MT2A LTR ERVL 1 163 -370 6 1301 252 86 0 0 chr6 93883257 93883292 -55633745 + (CTG)n Simple_repeat Simple_repeat 1 35 0 6 1301 289 340 113 23 chr6 93883298 93883563 -55633474 + MT2A LTR ERVL 245 533 0 6 1301 24 0 0 0 chr6 93883751 93883775 -55633262 + AT_rich Low_complexity Low_complexity 1 24 0 6 1301 757 174 36 14 chr6 93884090 93884230 -55632807 + B1_Mus2 SINE Alu 3 145 -2 6 1301 182 33 67 0 chr6 93884237 93884267 -55632770 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 6 1301 427 237 177 49 chr6 93884638 93884802 -55632235 + RMER30 DNA MER1_type 17 201 -1 6 1301 295 224 12 50 chr6 93885045 93885125 -55631912 + PB1D9 SINE Alu 43 119 -1 6 1301 565 203 43 43 chr6 93885432 93885571 -55631466 - B1_Mur1 SINE Alu 0 149 11 6 1301 369 273 20 73 chr6 93885437 93885587 -55631450 - ID_B1 SINE B4 -3 221 80 6 1301 267 306 0 12 chr6 93886992 93887078 -55629959 + B4 SINE B4 1 85 -207 6 1301 233 263 18 0 chr6 93887080 93887137 -55629900 + B3A SINE B2 1 58 -140 6 1301 798 214 100 40 chr6 93887214 93887414 -55629623 + B3 SINE B2 4 215 -1 6 1301 493 314 39 22 chr6 93887518 93887697 -55629340 + B4A SINE B4 109 290 -2 6 1301 323 57 0 36 chr6 93887783 93887838 -55629199 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 6 1301 1168 68 0 0 chr6 93888500 93888647 -55628390 + B1_Mus2 SINE Alu 1 147 0 6 1301 462 79 0 0 chr6 93888846 93888909 -55628128 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1301 261 0 0 0 chr6 93889310 93889339 -55627698 + (TAA)n Simple_repeat Simple_repeat 2 30 0 6 1301 185 355 115 62 chr6 93889371 93889614 -55627423 - L2b LINE L2 -2 3373 3118 6 1301 255 247 55 0 chr6 93889738 93889811 -55627226 + Charlie12 DNA MER1_type 25 101 -2772 6 1301 198 0 0 0 chr6 93889814 93889836 -55627201 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1301 802 286 66 12 chr6 93890845 93891103 -55625934 + B4 SINE B4 2 273 -19 6 1301 228 67 0 0 chr6 93891124 93891154 -55625883 + (CATA)n Simple_repeat Simple_repeat 4 33 0 6 1301 200 320 27 0 chr6 93892936 93893036 -55624001 - MIRc SINE MIR -124 144 38 6 1301 468 0 0 0 chr6 93893114 93893166 -55623871 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1301 200 128 0 25 chr6 93893730 93893770 -55623267 + (CTAA)n Simple_repeat Simple_repeat 2 40 0 6 1301 313 306 37 18 chr6 93893973 93894136 -55622901 - L1MA6 LINE L1 -122 6178 6013 6 1301 988 108 62 67 chr6 93894393 93894571 -55622466 - B2_Mm2 SINE B2 -14 181 5 6 1301 1140 106 44 16 chr6 93894598 93894780 -55622257 - B2_Mm2 SINE B2 -6 189 3 6 1301 393 75 0 0 chr6 93894794 93894847 -55622190 + (GGGA)n Simple_repeat Simple_repeat 2 54 0 6 1301 664 224 19 58 chr6 93895239 93895395 -55621642 + B1_Mur4 SINE Alu 1 150 0 6 1301 180 0 0 0 chr6 93895789 93895809 -55621228 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1301 305 310 104 19 chr6 93895811 93896228 -55620809 + L1M5 LINE L1 5387 5845 -334 6 1301 233 299 74 59 chr6 93896748 93896883 -55620154 + MIRb SINE MIR 121 257 -11 6 1301 248 85 0 41 chr6 93897378 93897427 -55619610 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 6 1301 207 100 0 0 chr6 93897446 93897476 -55619561 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 1301 426 295 150 50 chr6 93898125 93898325 -55618712 + B4A SINE B4 2 221 -71 6 1301 795 147 22 22 chr6 93898335 93898474 -55618563 + B1_Mur2 SINE Alu 1 139 -10 6 1301 235 100 160 0 chr6 93899486 93899536 -55617501 + L1MB4 LINE L1 6123 6180 0 6 1301 319 325 0 26 chr6 93899565 93899682 -55617355 + PB1D10 SINE Alu 1 114 -3 6 1301 774 245 77 20 chr6 93899682 93899877 -55617160 - B3 SINE B2 -9 207 1 6 1301 1091 268 46 29 chr6 93900538 93900884 -55616153 + ORR1E LTR MaLR 2 353 -6 6 1301 453 214 82 0 chr6 93901155 93901253 -55615784 + ID_B1 SINE B4 97 202 -22 6 1301 213 146 0 0 chr6 93901419 93901467 -55615570 + (T)n Simple_repeat Simple_repeat 1 48 0 6 1301 226 217 0 0 chr6 93901864 93901910 -55615127 - ID_B1 SINE B4 -86 138 93 6 1301 216 250 0 35 chr6 93901910 93901922 -55615115 - B1F2 SINE Alu -92 57 2 6 1301 216 0 0 0 chr6 93902552 93902576 -55614461 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 6 1301 208 222 0 0 chr6 93902943 93902979 -55614058 + G-rich Low_complexity Low_complexity 2 37 0 6 1301 561 191 38 45 chr6 93903193 93903325 -55613712 + B1_Mus1 SINE Alu 18 148 0 6 1301 476 190 20 10 chr6 93903328 93903429 -55613608 + RMER5 LTR ERV1 350 451 -83 6 1301 21 0 0 0 chr6 93903610 93903631 -55613406 + AT_rich Low_complexity Low_complexity 1 21 0 6 1301 332 303 90 15 chr6 93904346 93904480 -55612557 - RSINE1 SINE B4 -18 147 4 6 1301 2432 54 0 0 chr6 93906373 93906670 -55610367 + L1Md_F2 LINE L1 6248 6544 -38 6 1301 332 295 70 92 chr6 93907473 93907615 -55609422 - B4 SINE B4 -151 141 3 6 1301 183 42 0 0 chr6 93907650 93907674 -55609363 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1301 260 246 87 8 chr6 93907979 93908106 -55608931 - L1M5 LINE L1 -722 5440 5304 6 1301 304 316 0 0 chr6 93908230 93908309 -55608728 - ID4_ SINE ID -1 82 4 6 1301 597 338 58 27 chr6 93908551 93908846 -55608191 + MLT2B4 LTR ERVL 96 399 -157 6 1301 405 0 0 0 chr6 93908922 93908967 -55608070 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1301 641 239 56 62 chr6 93909094 93909169 -55607868 - B3A SINE B2 -1 197 127 6 1301 771 230 71 14 chr6 93909169 93909381 -55607656 + URR1B DNA MER1_type 1 224 -1 6 1301 641 233 80 37 chr6 93909381 93909516 -55607521 - B3A SINE B2 -65 133 3 6 1301 1068 94 99 12 chr6 93909868 93909888 -55607149 - B2_Mm2 SINE B2 -19 176 158 6 1301 258 32 0 0 chr6 93909888 93909919 -55607118 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1301 1068 94 99 12 chr6 93909919 93910060 -55606977 - B2_Mm2 SINE B2 -38 157 1 6 1301 243 342 50 83 chr6 93910281 93910558 -55606479 + ORR1E LTR MaLR 48 315 -44 6 1301 396 301 16 24 chr6 93910931 93911057 -55605980 + B3A SINE B2 68 192 -6 6 1301 664 304 45 0 chr6 93911081 93911282 -55605755 + ID_B1 SINE B4 9 218 -6 6 1301 216 207 0 33 chr6 93911305 93911365 -55605672 + MER5B DNA MER1_type 117 174 -4 6 1301 324 0 0 0 chr6 93911762 93911798 -55605239 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1301 628 99 0 18 chr6 93911798 93911911 -55605126 + (GA)n Simple_repeat Simple_repeat 2 112 0 6 1301 246 281 73 0 chr6 93913290 93913372 -55603665 + L1MDa LINE L1 26 113 -6520 6 1301 1441 90 16 0 chr6 93913461 93913650 -55603387 + B2_Mm2 SINE B2 2 193 -2 6 1301 636 169 0 48 chr6 93913685 93913809 -55603228 + B1_Mur4 SINE Alu 10 127 -23 6 1301 232 295 87 7 chr6 93913855 93914005 -55603032 + L1MDa LINE L1 1490 1651 -4982 6 1301 335 241 38 0 chr6 93914129 93914208 -55602829 + B3 SINE B2 1 82 -134 6 1301 232 204 0 18 chr6 93914335 93914390 -55602647 + (TATG)n Simple_repeat Simple_repeat 1 54 0 6 1301 685 277 101 17 chr6 93914398 93914806 -55602231 + L1MDa LINE L1 2114 2555 -4078 6 1301 570 29 0 0 chr6 93915035 93915103 -55601934 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 6 1301 345 270 148 11 chr6 93915296 93915566 -55601471 + L1MDa LINE L1 2563 2869 -3668 6 1301 479 273 76 45 chr6 93915748 93915905 -55601132 + B3A SINE B2 1 162 -36 6 1301 1214 281 122 58 chr6 93915931 93917117 -55599920 + L1MDa LINE L1 3160 4421 -2116 6 1301 245 303 124 0 chr6 93917174 93917263 -55599774 + B3 SINE B2 71 170 -46 6 1301 1013 143 23 6 chr6 93917544 93917720 -55599317 + URR1A DNA MER1_type 48 226 0 6 1301 437 322 39 71 chr6 93917848 93918162 -55598875 + B4 SINE B4 2 292 0 6 1301 1089 210 5 23 chr6 93918193 93918408 -55598629 - B3 SINE B2 -5 211 1 6 1301 672 13 0 0 chr6 93919333 93919410 -55597627 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 1301 360 94 0 0 chr6 93920198 93920251 -55596786 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 6 1301 244 343 50 28 chr6 93920533 93920674 -55596363 - MIRb SINE MIR -39 229 86 7 1301 539 272 77 6 chr6 93920782 93920952 -55596085 + B3 SINE B2 5 186 -30 7 1301 1142 208 9 5 chr6 93921232 93921445 -55595592 - B3 SINE B2 0 216 3 7 1301 198 71 0 0 chr6 93921688 93921716 -55595321 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 7 1301 859 125 0 8 chr6 93923343 93923472 -55593565 + B1_Mur4 SINE Alu 23 150 0 7 1301 593 333 30 0 chr6 93923730 93923928 -55593109 - ID_B1 SINE B4 -3 221 18 7 1301 324 238 91 45 chr6 93923951 93924061 -55592976 - PB1D10 SINE Alu -2 115 1 7 1301 363 345 41 0 chr6 93924362 93924507 -55592530 - MER58B DNA MER1_type -1 340 190 7 1301 1208 61 78 12 chr6 93925437 93925603 -55591434 - B2_Mm2 SINE B2 -18 177 1 7 1301 255 154 30 15 chr6 93925707 93925773 -55591264 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 7 1301 757 180 8 0 chr6 93925773 93925901 -55591136 - B1_Mus1 SINE Alu -19 129 1 7 1301 841 305 261 10 chr6 93925903 93926380 -55590657 - Lx8 LINE L1 -127 7346 6750 7 1301 1120 288 50 11 chr6 93926396 93926758 -55590279 + Lx8 LINE L1 6407 6782 -691 7 1301 882 332 58 23 chr6 93926758 93927155 -55589882 - MER82 DNA MER2_type -42 611 201 7 1301 345 62 0 0 chr6 93927206 93927254 -55589783 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1301 199 0 65 0 chr6 93927497 93927528 -55589509 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1301 1129 37 15 0 chr6 93927529 93927665 -55589372 - B1_Mm SINE Alu -8 139 2 7 1301 275 220 0 0 chr6 93927668 93927718 -55589319 + B1_Mur4 SINE Alu 18 67 -83 7 1301 1243 159 77 32 chr6 93927869 93928180 -55588857 + ORR1C1-int LTR MaLR 1182 1506 -3 7 1301 1561 216 66 9 chr6 93928178 93928528 -55588509 + ORR1C1 LTR MaLR 1 370 -8 7 1301 452 285 131 17 chr6 93928542 93928717 -55588320 - MER82 DNA MER2_type -457 196 2 7 1301 334 230 13 13 chr6 93929372 93929447 -55587590 + ID_B1 SINE B4 130 204 -20 7 1301 552 195 132 8 chr6 93929460 93929589 -55587448 + B1_Mus2 SINE Alu 1 145 -2 7 1301 1252 159 9 48 chr6 93929734 93929965 -55587072 - URR1A DNA MER1_type 0 226 5 7 1301 211 297 98 10 chr6 93931680 93931782 -55585255 + MIR SINE MIR 21 131 -131 7 1301 357 82 0 0 chr6 93931903 93931952 -55585085 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1301 288 0 0 0 chr6 93931952 93931984 -55585053 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1301 1481 206 73 36 chr6 93932022 93932379 -55584658 - ORR1D2 LTR MaLR 0 370 1 7 1301 378 288 119 35 chr6 93932555 93932782 -55584255 - Tigger5 DNA MER2_type 0 2406 2161 7 1301 221 220 20 0 chr6 93933546 93933596 -55583441 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 7 1301 1140 68 7 0 chr6 93934515 93934661 -55582376 - B1_Mm SINE Alu 0 147 1 7 1301 212 162 0 0 chr6 93934675 93934712 -55582325 + A-rich Low_complexity Low_complexity 2 38 0 7 1301 263 253 0 128 chr6 93934715 93934739 -55582298 + B4 SINE B4 72 84 -208 7 1301 552 210 151 0 chr6 93934739 93934858 -55582179 + B1_Mus1 SINE Alu 1 137 -11 7 1301 396 307 0 99 chr6 93936242 93936394 -55580643 + RSINE1 SINE B4 25 161 -4 7 1301 204 40 0 0 chr6 93936404 93936429 -55580608 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1301 414 0 0 0 chr6 93938540 93938586 -55578451 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1301 206 62 31 0 chr6 93938592 93938624 -55578413 + (GGGAGA)n Simple_repeat Simple_repeat 3 35 0 7 1301 421 321 67 30 chr6 93938653 93938756 -55578281 - MER2B DNA MER2_type -158 178 67 7 1301 492 18 0 0 chr6 93938756 93938813 -55578224 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 7 1301 421 321 67 30 chr6 93938813 93938873 -55578164 - MER2B DNA MER2_type -270 66 9 7 1301 200 231 0 37 chr6 93939139 93939193 -55577844 - L3b LINE CR1 -255 227 176 7 1301 646 281 138 19 chr6 93940233 93940494 -55576543 - B4A SINE B4 0 292 1 7 1301 208 0 0 59 chr6 93941756 93941790 -55575247 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1301 1077 63 35 7 chr6 93941804 93941947 -55575090 - B1_Mus2 SINE Alu 0 147 1 7 1301 500 241 59 18 chr6 93943385 93943554 -55573483 + L1MD2 LINE L1 4750 4925 -1221 7 1301 21 0 0 0 chr6 93943913 93943934 -55573103 + AT_rich Low_complexity Low_complexity 1 21 0 7 1301 721 254 48 16 chr6 93943937 93944125 -55572912 - B3A SINE B2 -3 195 2 7 1301 238 250 93 23 chr6 93944126 93944212 -55572825 + L1MC1 LINE L1 6224 6315 -18 7 1301 255 31 0 0 chr6 93944232 93944264 -55572773 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 1301 331 293 75 80 chr6 93944802 93945028 -55572009 + L1MD2 LINE L1 5540 5764 -595 7 1301 305 358 0 9 chr6 93945087 93945194 -55571843 + L1MD2 LINE L1 5925 6030 -212 7 1301 1481 179 163 3 chr6 93945327 93945658 -55571379 - MTD LTR MaLR -5 414 31 7 1301 386 286 81 38 chr6 93945720 93945905 -55571132 + L1MD2 LINE L1 6144 6336 -23 7 1301 462 323 0 0 chr6 93946608 93946741 -55570296 + ID_B1 SINE B4 90 222 -2 7 1301 281 265 0 108 chr6 93947359 93947452 -55569585 + ID4_ SINE ID 1 83 0 7 1301 369 0 0 0 chr6 93947655 93947696 -55569341 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1301 358 245 109 132 chr6 93947696 93948044 -55568993 - RLTR15 LTR ERVK -19 340 1 7 1301 778 218 309 3 chr6 93948180 93948495 -55568542 - MTD LTR MaLR -14 405 6 7 1301 513 273 0 32 chr6 93948504 93948629 -55568408 - B4 SINE B4 -169 123 3 7 1301 786 263 3 0 chr6 93948651 93948838 -55568199 - B3 SINE B2 -6 192 1 7 1301 216 0 0 0 chr6 93949393 93949417 -55567620 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 1301 348 94 0 0 chr6 93949792 93949845 -55567192 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 1301 420 290 77 35 chr6 93950891 93951034 -55566003 + B1_Mur1 SINE Alu 1 149 0 7 1301 307 258 135 0 chr6 93951893 93951982 -55565055 - PB1D10 SINE Alu 0 117 17 7 1301 665 274 16 68 chr6 93952253 93952304 -55564733 - B3 SINE B2 -2 196 153 7 1301 396 0 0 0 chr6 93952304 93952348 -55564689 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1301 665 267 11 48 chr6 93952348 93952507 -55564530 - B3 SINE B2 -62 154 1 7 1301 241 222 89 0 chr6 93952507 93952595 -55564442 + Charlie4a DNA MER1_type 411 506 -2 7 1301 191 206 94 16 chr6 93952628 93952692 -55564345 + MIRc SINE MIR 78 146 -122 7 1301 870 207 39 0 chr6 93952825 93953004 -55564033 - B3 SINE B2 -30 186 1 7 1301 351 0 0 0 chr6 93953630 93953669 -55563368 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1301 1338 81 32 11 chr6 93953832 93954019 -55563018 + B2_Mm2 SINE B2 5 195 0 7 1301 401 257 35 9 chr6 93954211 93954325 -55562712 + PB1D10 SINE Alu 1 117 0 7 1301 259 283 131 137 chr6 93954807 93954975 -55562062 + B4 SINE B4 1 167 -125 7 1301 342 0 0 0 chr6 93955042 93955080 -55561957 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1301 441 0 0 0 chr6 93955631 93955680 -55561357 + (GGGGA)n Simple_repeat Simple_repeat 4 52 0 7 1301 240 32 0 0 chr6 93955918 93955940 -55561097 + (CG)n Simple_repeat Simple_repeat 1 22 0 7 1301 279 0 0 0 chr6 93955940 93955971 -55561066 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1301 240 32 0 0 chr6 93955971 93955979 -55561058 + (CG)n Simple_repeat Simple_repeat 1 8 0 7 1301 216 0 0 0 chr6 93959474 93959498 -55557539 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1301 698 268 109 27 chr6 93959586 93959843 -55557194 - B4 SINE B4 -14 278 1 7 1301 180 0 0 0 chr6 93961059 93961079 -55555958 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 7 1301 470 304 21 69 chr6 93961141 93961286 -55555751 - RSINE1 SINE B4 -25 140 3 7 1301 25 31 0 0 chr6 93962870 93962902 -55554135 + AT_rich Low_complexity Low_complexity 1 32 0 7 1301 484 275 90 21 chr6 93962976 93963121 -55553916 - B4 SINE B4 -16 276 122 7 1301 1757 169 130 3 chr6 93963531 93963893 -55553144 + MTD LTR MaLR 6 413 -6 7 1301 212 178 0 43 chr6 93963898 93963945 -55553092 - B3A SINE B2 -152 46 2 7 1301 594 0 0 0 chr6 93964176 93964242 -55552795 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 1301 189 372 41 16 chr6 93964315 93964438 -55552599 - L2 LINE L2 -453 2966 2841 7 1301 446 0 19 0 chr6 93965158 93965212 -55551825 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1301 275 274 0 0 chr6 93965308 93965370 -55551667 - ID SINE ID -152 72 11 7 1301 817 52 17 0 chr6 93966252 93966367 -55550670 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 7 1301 207 0 0 0 chr6 93966383 93966406 -55550631 + (GA)n Simple_repeat Simple_repeat 2 24 0 7 1301 649 342 58 33 chr6 93966420 93966695 -55550342 - B4 SINE B4 -4 288 7 7 1301 342 67 0 0 chr6 93966736 93966781 -55550256 + (TATG)n Simple_repeat Simple_repeat 3 47 0 7 1301 568 280 67 103 chr6 93967201 93967424 -55549613 + B3A SINE B2 1 215 -1 7 1301 502 261 53 144 chr6 93967448 93967712 -55549325 + B4 SINE B4 41 280 -12 7 1301 225 0 0 0 chr6 93968183 93968208 -55548829 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1301 871 141 15 0 chr6 93968208 93968343 -55548694 - B1_Mus1 SINE Alu -11 137 1 7 1301 288 216 277 25 chr6 93968529 93968648 -55548389 - B1F SINE Alu 0 149 1 7 1301 926 272 46 29 chr6 93969060 93969408 -55547629 + MLT1B LTR MaLR 29 382 -8 7 1301 266 311 116 29 chr6 93969733 93969905 -55547132 + MLT1G3 LTR MaLR 194 380 -215 7 1301 1116 89 7 0 chr6 93969917 93970063 -55546974 + B1_Mus2 SINE Alu 1 147 0 7 1301 243 79 0 0 chr6 93970063 93970101 -55546936 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 7 1301 329 308 44 0 chr6 93971240 93971331 -55545706 + B1_Mus2 SINE Alu 1 95 -52 7 1301 936 293 70 30 chr6 93971577 93971908 -55545129 - ORR1E LTR MaLR -15 344 1 7 1301 457 320 114 13 chr6 93972438 93972745 -55544292 + LTR40c LTR ERVL 128 465 0 7 1301 414 237 23 126 chr6 93972898 93973072 -55543965 + RMER15 LTR ERVL 2 157 -418 8 1301 915 303 25 4 chr6 93973072 93973350 -55543687 + RMER15 LTR ERVL 274 557 -18 8 1301 315 0 0 0 chr6 93973356 93973391 -55543646 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1301 279 0 0 0 chr6 93973391 93973421 -55543616 + (TC)n Simple_repeat Simple_repeat 1 31 0 8 1301 360 0 0 0 chr6 93973624 93973664 -55543373 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1301 369 0 0 0 chr6 93973664 93973704 -55543333 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1301 315 0 0 0 chr6 93973927 93973962 -55543075 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1301 280 293 0 0 chr6 93975680 93975755 -55541282 + MLT1D LTR MaLR 1 75 -430 8 1301 414 316 118 0 chr6 93975898 93976085 -55540952 + B4A SINE B4 43 251 -41 8 1301 260 53 26 0 chr6 93976174 93976212 -55540825 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 8 1301 236 295 88 9 chr6 93976261 93976374 -55540663 + MER20 DNA MER1_type 26 147 -72 8 1301 198 0 0 0 chr6 93976887 93976909 -55540128 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8 1301 342 0 0 0 chr6 93977280 93977318 -55539719 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 8 1301 1646 82 4 0 chr6 93977318 93977550 -55539487 + ORR1A2 LTR MaLR 95 327 0 8 1301 554 259 72 51 chr6 93977697 93977759 -55539278 + MTD LTR MaLR 13 78 -341 8 1301 2344 150 71 42 chr6 93977759 93978212 -55538825 + RMER4A LTR ERVK 1 466 0 8 1301 554 259 72 51 chr6 93978212 93978344 -55538693 + MTD LTR MaLR 79 211 -208 8 1301 600 231 41 0 chr6 93978345 93978466 -55538571 + B3 SINE B2 3 128 -88 8 162 618 243 40 0 chr6 93978473 93978625 -55538412 + MTD LTR MaLR 236 393 -26 8 1302 279 0 0 0 chr6 93978832 93978863 -55538174 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1302 25 0 0 0 chr6 93978898 93978923 -55538114 + AT_rich Low_complexity Low_complexity 1 25 0 8 1302 1189 75 0 0 chr6 93979198 93979345 -55537692 + B1_Mus1 SINE Alu 2 148 0 8 1302 503 287 16 0 chr6 93979722 93979851 -55537186 - ORR1E LTR MaLR -228 131 1 8 1302 297 0 0 0 chr6 93980821 93980854 -55536183 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1302 275 395 51 0 chr6 93981043 93981200 -55535837 + MIR SINE MIR 2 166 -96 8 1302 755 214 0 0 chr6 93981245 93981385 -55535652 + B1_Mus2 SINE Alu 1 140 -7 8 1302 1576 208 153 5 chr6 93981504 93981871 -55535166 - MTC LTR MaLR 0 421 1 8 1302 604 283 58 29 chr6 93981908 93982079 -55534958 + B3A SINE B2 18 193 -5 8 1302 222 62 0 0 chr6 93982239 93982271 -55534766 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1302 252 250 33 0 chr6 93983533 93983593 -55533444 + ID4_ SINE ID 8 69 -14 8 1302 603 224 68 107 chr6 93984212 93984417 -55532620 - B4A SINE B4 -11 281 85 8 1302 652 288 83 34 chr6 93984496 93984845 -55532192 - Lx9 LINE L1 -22 7622 7257 8 1302 195 42 0 0 chr6 93985098 93985122 -55531915 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 8 1302 189 0 0 0 chr6 93985506 93985527 -55531510 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1302 366 227 656 12 chr6 93985910 93986073 -55530964 + B4A SINE B4 2 269 -23 8 1302 180 0 0 0 chr6 93986073 93986093 -55530944 + (CAAG)n Simple_repeat Simple_repeat 4 23 0 8 1302 537 16 0 0 chr6 93986093 93986155 -55530882 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1302 1479 212 107 14 chr6 93986943 93987307 -55529730 - Lx3C LINE L1 -2 6974 6577 8 1302 559 332 23 50 chr6 93987430 93987690 -55529347 - B4A SINE B4 -26 266 14 8 1302 614 243 211 0 chr6 93987722 93987907 -55529130 - ID_B1 SINE B4 0 224 1 8 1302 2382 74 3 18 chr6 93988120 93988450 -55528587 + L1Md_F2 LINE L1 6258 6582 0 8 1302 928 213 4 75 chr6 93988466 93988694 -55528343 + B3 SINE B2 3 214 -2 8 1302 882 231 38 19 chr6 93988961 93989173 -55527864 + B3 SINE B2 1 216 0 8 1302 414 171 33 0 chr6 93989491 93989577 -55527460 + PB1D9 SINE Alu 2 94 -55 8 1302 33 56 0 0 chr6 93989739 93989793 -55527244 + AT_rich Low_complexity Low_complexity 1 54 0 8 1302 220 216 20 0 chr6 93991765 93991816 -55525221 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1302 505 321 87 60 chr6 93991834 93991900 -55525137 - B4A SINE B4 -19 273 214 8 1302 723 201 197 22 chr6 93991900 93992083 -55524954 - B3 SINE B2 0 216 2 8 1302 505 321 87 60 chr6 93992083 93992281 -55524756 - B4A SINE B4 -79 213 2 8 1302 294 279 157 37 chr6 93994151 93994285 -55522752 - RSINE1 SINE B4 -13 152 3 8 1302 1049 105 0 0 chr6 93994543 93994686 -55522351 + B1_Mus2 SINE Alu 5 147 0 8 1302 441 36 0 0 chr6 93994769 93994824 -55522213 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1302 229 233 82 16 chr6 93994900 93994961 -55522076 - B4A SINE B4 -224 68 4 8 1302 457 294 70 39 chr6 93995200 93995430 -55521607 - RMER15 LTR ERVL -15 560 324 8 1302 1496 208 76 83 chr6 93996335 93996850 -55520187 + RLTR11A LTR ERVK 16 526 -2 8 1302 1036 52 0 0 chr6 93997727 93997862 -55519175 + B1_Mm SINE Alu 13 147 0 8 1302 374 236 52 91 chr6 93997728 93997882 -55519155 + B4A SINE B4 99 246 -46 8 1302 258 32 0 0 chr6 93998612 93998643 -55518394 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 8 1302 669 244 75 11 chr6 93998748 93998922 -55518115 - B3A SINE B2 -9 189 5 8 1302 440 319 40 47 chr6 93999744 93999892 -55517145 - RSINE1 SINE B4 -6 159 13 8 1302 302 271 0 0 chr6 93999915 94000000 -55517037 - L1MB4 LINE L1 -38 6142 6058 8 1302 561 236 45 75 chr6 94001601 94001802 -55515235 + L1_Rod LINE L1 449 643 -6529 1 1302 375 217 0 0 chr6 94001803 94001872 -55515165 + B2_Mm2 SINE B2 2 70 -125 2 1302 4082 216 76 34 chr6 94001872 94002527 -55514510 + L1MA4 LINE L1 4605 5307 -540 3 1302 468 0 0 0 chr6 94002527 94002579 -55514458 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 4 1302 4082 270 72 48 chr6 94002579 94003648 -55513389 + L1MA4 LINE L1 5308 6406 -1067 3 1302 675 204 65 18 chr6 94004630 94004800 -55512237 + B3A SINE B2 14 191 -7 5 1302 693 0 0 0 chr6 94004815 94004892 -55512145 + (GAA)n Simple_repeat Simple_repeat 3 79 0 6 1302 342 45 0 0 chr6 94004892 94004936 -55512101 + (CAG)n Simple_repeat Simple_repeat 1 44 0 7 1302 3116 52 31 3 chr6 94004960 94005342 -55511695 - MTA_Mm LTR MaLR 0 396 4 8 1302 259 268 0 79 chr6 94005388 94005477 -55511560 + B3A SINE B2 1 82 -116 9 1302 324 0 0 0 chr6 94006574 94006610 -55510427 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1302 480 345 6 0 chr6 94007836 94008004 -55509033 - B4A SINE B4 -4 288 120 1 1302 490 296 74 52 chr6 94008527 94008798 -55508239 + B4 SINE B4 7 283 -9 1 1302 180 0 0 0 chr6 94009130 94009150 -55507887 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1302 559 273 36 7 chr6 94009261 94009401 -55507636 + MER20 DNA MER1_type 1 144 -75 1 1302 353 288 55 16 chr6 94009823 94009950 -55507087 - ID_B1 SINE B4 0 224 93 1 1302 418 239 45 23 chr6 94010632 94010765 -55506272 - B1F SINE Alu -13 136 1 1 1302 260 327 19 9 chr6 94010941 94011049 -55505988 - MIR SINE MIR -91 171 63 1 1302 385 285 42 54 chr6 94012879 94013046 -55503991 - MIRb SINE MIR -32 236 72 1 1302 761 204 138 10 chr6 94013304 94013507 -55503530 + MER34 LTR ERV1 20 248 -294 1 1302 334 134 0 29 chr6 94014817 94014886 -55502151 + CT-rich Low_complexity Low_complexity 3 69 0 2 1302 441 250 152 0 chr6 94015329 94015441 -55501596 + B1_Mur3 SINE Alu 2 130 -19 2 1302 732 169 89 0 chr6 94016395 94016519 -55500518 + B1_Mur2 SINE Alu 1 135 -14 2 1302 739 206 0 11 chr6 94016519 94016690 -55500347 + GA-rich Low_complexity Low_complexity 10 179 0 2 1302 369 257 146 9 chr6 94017092 94017202 -55499835 - RSINE1 SINE B4 -36 129 5 2 1302 233 250 59 0 chr6 94017383 94017451 -55499586 + ID4 SINE ID 5 76 -7 2 1302 309 265 19 19 chr6 94017543 94017647 -55499390 + MER57A-int LTR ERV1 5818 5921 -266 2 1302 464 0 18 0 chr6 94018089 94018145 -55498892 + (GGGA)n Simple_repeat Simple_repeat 3 59 0 2 1302 453 218 30 0 chr6 94018912 94019013 -55498024 - ID_B1 SINE B4 -10 214 111 2 1302 192 40 0 0 chr6 94019050 94019075 -55497962 + (TAAAAA)n Simple_repeat Simple_repeat 1 25 0 2 1302 327 25 0 0 chr6 94019647 94019687 -55497350 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1302 318 368 17 17 chr6 94019774 94019893 -55497144 + PB1 SINE Alu 5 123 -4 3 1302 284 298 56 37 chr6 94020280 94020388 -55496649 + ID_B1 SINE B4 103 212 -12 3 1302 845 188 37 5 chr6 94021127 94021314 -55495723 - URR1A DNA MER1_type -1 225 33 3 1302 234 0 0 0 chr6 94021497 94021523 -55495514 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 1302 306 73 0 0 chr6 94021603 94021644 -55495393 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1302 1006 239 143 69 chr6 94022646 94022996 -55494041 - MTD LTR MaLR -14 405 30 3 1302 612 239 42 28 chr6 94023021 94023163 -55493874 + B1_Mur3 SINE Alu 6 149 0 3 1302 460 248 16 49 chr6 94023307 94023430 -55493607 - PB1D9 SINE Alu -1 119 1 3 1302 342 0 0 0 chr6 94025720 94025758 -55491279 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 3 1302 630 272 7 20 chr6 94025848 94025998 -55491039 - RSINE1 SINE B4 -15 150 3 4 1302 643 227 18 78 chr6 94026043 94026210 -55490827 - RSINE1 SINE B4 0 165 9 4 1302 371 295 19 0 chr6 94027579 94027684 -55489353 + PB1D7 SINE Alu 1 107 -13 4 1302 223 267 0 0 chr6 94027693 94027738 -55489299 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 4 1302 1183 61 0 0 chr6 94028368 94028515 -55488522 + B1_Mus1 SINE Alu 1 147 -1 4 1302 22 35 0 0 chr6 94028520 94028549 -55488488 + AT_rich Low_complexity Low_complexity 1 29 0 4 1302 387 227 210 18 chr6 94028832 94029061 -55487976 - RMER15 LTR ERVL -4 571 299 4 1302 252 270 66 22 chr6 94030482 94030573 -55486464 + B4A SINE B4 108 202 -90 4 1302 850 306 87 64 chr6 94030647 94031243 -55485794 + L1MB8 LINE L1 5567 6176 -2 4 1302 279 0 0 0 chr6 94031785 94031816 -55485221 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 4 1302 1107 88 0 13 chr6 94031971 94032120 -55484917 + B1_Mus2 SINE Alu 1 147 0 5 1302 291 54 0 0 chr6 94032120 94032157 -55484880 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1302 294 329 80 49 chr6 94032717 94032941 -55484096 - L2c LINE L2 0 3387 3157 5 1302 738 295 53 18 chr6 94035160 94035443 -55481594 - MER2 DNA MER2_type -42 303 11 5 1302 258 324 69 61 chr6 94036532 94036696 -55480341 - MER58A DNA MER1_type -2094 326 45 5 1302 236 30 30 0 chr6 94036831 94036864 -55480173 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 5 1302 270 0 0 0 chr6 94037828 94037858 -55479179 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1302 198 103 0 0 chr6 94037879 94037908 -55479129 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 5 1302 26 0 0 0 chr6 94037920 94037946 -55479091 + AT_rich Low_complexity Low_complexity 1 26 0 5 1302 480 307 98 63 chr6 94037949 94038154 -55478883 + B4 SINE B4 80 291 -1 5 1302 1172 42 0 29 chr6 94038711 94038882 -55478155 + (GGGGA)n Simple_repeat Simple_repeat 1 166 0 6 1302 673 173 111 15 chr6 94039219 94039354 -55477683 + B1_Mur2 SINE Alu 1 148 -1 6 1302 1746 144 106 3 chr6 94039870 94040210 -55476827 - RLTR14 LTR ERV1 0 382 8 6 1302 611 237 65 43 chr6 94040223 94040408 -55476629 + B4 SINE B4 104 292 0 6 1302 389 228 25 58 chr6 94040675 94040796 -55476241 + PB1D10 SINE Alu 1 117 0 6 1302 200 34 0 33 chr6 94043380 94043410 -55473627 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 6 1302 464 230 102 15 chr6 94043738 94043875 -55473162 - B1_Mur1 SINE Alu 0 149 1 6 1302 481 267 240 4 chr6 94045938 94046171 -55470866 + B4A SINE B4 1 288 -4 6 1302 276 185 0 0 chr6 94046202 94046256 -55470781 + GA-rich Low_complexity Low_complexity 4 57 0 6 1302 572 263 40 28 chr6 94046370 94046546 -55470491 - B3 SINE B2 -35 181 4 6 1302 38 22 0 0 chr6 94047792 94047837 -55469200 + AT_rich Low_complexity Low_complexity 1 45 0 7 1302 237 259 17 33 chr6 94048091 94048151 -55468886 + ID4_ SINE ID 13 71 -12 7 1302 873 301 46 89 chr6 94048260 94048651 -55468386 + MTE2a LTR MaLR 1 374 -5 7 1302 213 239 29 15 chr6 94049292 94049360 -55467677 + GA-rich Low_complexity Low_complexity 2 70 0 7 1302 529 246 197 18 chr6 94049361 94049589 -55467448 - B4A SINE B4 -22 270 2 7 1302 425 325 162 13 chr6 94050344 94050572 -55466465 + Tigger7 DNA MER2_type 11 272 -2219 7 1302 1588 194 161 46 chr6 94050848 94051308 -55465729 + MT2A LTR ERVL 21 533 0 7 1302 236 344 0 0 chr6 94051308 94051369 -55465668 + Tigger7 DNA MER2_type 2427 2487 -4 7 1302 230 323 0 30 chr6 94052258 94052325 -55464712 - ID4_ SINE ID -14 69 5 7 1302 501 262 140 52 chr6 94053997 94054190 -55462847 + ID_B1 SINE B4 2 211 -13 7 1302 512 259 21 21 chr6 94054272 94054414 -55462623 + B4A SINE B4 1 142 -150 7 1302 375 41 0 0 chr6 94054440 94054489 -55462548 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1302 345 47 0 0 chr6 94054489 94054531 -55462506 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1302 259 302 147 0 chr6 94055338 94055467 -55461570 + MLT1D LTR MaLR 339 486 -19 8 1302 306 319 160 16 chr6 94055548 94055867 -55461170 + MLT1A0 LTR MaLR 1 365 0 8 1302 253 278 14 0 chr6 94056846 94056918 -55460119 + L1ME3A LINE L1 6078 6150 -23 8 1302 21 0 0 0 chr6 94057460 94057481 -55459556 + AT_rich Low_complexity Low_complexity 1 21 0 8 1302 442 259 184 0 chr6 94058829 94058976 -55458061 + B3A SINE B2 1 174 -24 8 1302 1005 215 9 14 chr6 94059063 94059275 -55457762 + ID_B1 SINE B4 8 218 -6 8 1302 604 270 18 0 chr6 94060106 94060269 -55456768 - ID_B1 SINE B4 0 224 59 8 1302 229 294 22 0 chr6 94060271 94060363 -55456674 - L1MD LINE L1 -3667 2479 2386 8 1302 543 289 144 4 chr6 94060363 94060606 -55456431 + B4A SINE B4 1 277 -15 9 1302 568 176 240 98 chr6 94060699 94060882 -55456155 - B3 SINE B2 -6 210 2 9 1302 234 0 0 0 chr6 94061190 94061216 -55455821 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1302 1375 97 16 0 chr6 94061232 94061418 -55455619 - B2_Mm2 SINE B2 -5 190 2 9 1302 434 265 9 117 chr6 94062749 94062860 -55454177 + PB1 SINE Alu 2 100 -49 9 1302 448 284 87 43 chr6 94063856 94064012 -55453025 + B3A SINE B2 1 170 -28 9 1302 297 0 0 0 chr6 94064012 94064045 -55452992 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1302 448 284 87 43 chr6 94064045 94064072 -55452965 + B3A SINE B2 171 192 -6 9 1302 244 223 121 50 chr6 94064452 94064551 -55452486 + RMER20B LTR ERVK 180 285 -342 9 1302 219 246 18 0 chr6 94064537 94064594 -55452443 - ID SINE ID -156 68 11 9 1302 239 320 32 0 chr6 94064650 94064775 -55452262 - L1MD3 LINE L1 -33 7962 7834 9 1302 859 240 71 28 chr6 94064848 94065101 -55451936 + L1M2 LINE L1 5432 5695 -605 1 1302 1371 152 9 9 chr6 94065198 94065424 -55451613 + URR1A DNA MER1_type 1 226 0 1 1302 210 250 161 0 chr6 94065503 94065559 -55451478 - ID4_ SINE ID -10 73 9 1 1302 296 282 218 0 chr6 94065569 94065711 -55451326 - L1MD LINE L1 -2817 3329 3157 1 1302 957 272 75 25 chr6 94065720 94066072 -55450965 - ORR1D2 LTR MaLR 0 367 2 1 1302 432 246 72 54 chr6 94067755 94067960 -55449077 + MLT1F2 LTR MaLR 374 579 0 1 1302 1139 97 3 5 chr6 94068203 94068394 -55448643 + B2_Mm2 SINE B2 1 189 -4 1 1302 664 243 63 6 chr6 94068410 94068584 -55448453 + B3 SINE B2 32 215 -1 1 1302 4035 89 29 33 chr6 94070398 94071012 -55446025 - Lx4A LINE L1 0 7058 6447 1 1302 2725 83 3 6 chr6 94071013 94071375 -55445662 + Lx4A LINE L1 6133 6493 -565 1 1302 33 43 0 0 chr6 94072047 94072094 -55444943 + AT_rich Low_complexity Low_complexity 1 47 0 1 1302 216 0 0 0 chr6 94074866 94074890 -55442147 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1302 1198 98 17 17 chr6 94075689 94075865 -55441172 + B2_Mm2 SINE B2 2 177 -18 1 1302 284 211 0 13 chr6 94076052 94076129 -55440908 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1302 324 119 0 0 chr6 94077669 94077728 -55439309 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 1 1302 202 269 0 0 chr6 94079222 94079274 -55437763 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1302 389 253 49 93 chr6 94079315 94079392 -55437645 + MER3 DNA MER1_type 30 111 -98 1 1302 1110 82 0 7 chr6 94079392 94079531 -55437506 + B1_Mus2 SINE Alu 1 139 -8 1 1302 210 37 0 0 chr6 94079531 94079558 -55437479 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1302 389 253 49 93 chr6 94079565 94079670 -55437367 + MER3 DNA MER1_type 112 204 -5 1 1302 424 45 0 29 chr6 94081080 94081149 -55435888 + (TTTTG)n Simple_repeat Simple_repeat 2 68 0 1 1302 184 104 0 59 chr6 94081321 94081372 -55435665 + (CCAA)n Simple_repeat Simple_repeat 2 49 0 1 1302 289 216 0 11 chr6 94081481 94081549 -55435488 + B3A SINE B2 97 159 -57 1 1302 576 288 17 139 chr6 94081588 94081875 -55435162 + B4A SINE B4 40 291 -1 1 1302 281 282 122 40 chr6 94083955 94084103 -55432934 + RSINE1 SINE B4 2 161 -4 1 1302 426 39 0 0 chr6 94084123 94084175 -55432862 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1302 683 282 14 14 chr6 94084769 94084981 -55432056 - ID_B1 SINE B4 -9 215 4 1 1302 336 24 0 0 chr6 94085164 94085205 -55431832 + (CCA)n Simple_repeat Simple_repeat 1 41 0 1 1302 23 0 0 0 chr6 94085331 94085354 -55431683 + AT_rich Low_complexity Low_complexity 1 23 0 1 1302 420 82 0 0 chr6 94087783 94087844 -55429193 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1302 520 258 8 16 chr6 94087866 94087992 -55429045 - RSINE1 SINE B4 -15 150 26 1 1302 553 224 136 24 chr6 94089292 94089461 -55427576 + B4A SINE B4 8 195 -97 1 1302 241 324 129 40 chr6 94089585 94089646 -55427391 + L1ME3 LINE L1 5573 5639 -525 1 1302 198 0 0 0 chr6 94089646 94089668 -55427369 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1302 252 296 122 34 chr6 94089668 94089979 -55427058 + L1ME3 LINE L1 5640 5978 -186 1 1302 250 265 31 131 chr6 94090625 94090766 -55426271 + PB1D7 SINE Alu 2 145 -2 1 1302 254 143 0 20 chr6 94091032 94091082 -55425955 + G-rich Low_complexity Low_complexity 4 52 0 1 1302 1991 136 139 20 chr6 94091111 94091463 -55425574 + ORR1B1 LTR MaLR 1 394 0 1 1302 915 179 296 11 chr6 94093236 94093513 -55423524 + ORR1D1 LTR MaLR 17 372 -2 1 1302 215 346 38 19 chr6 94094075 94094181 -55422856 + MIRm SINE MIR 41 148 -128 1 1302 274 271 40 0 chr6 94094368 94094445 -55422592 + PB1D10 SINE Alu 1 91 -36 1 1302 227 330 22 11 chr6 94095462 94095554 -55421483 + B1_Mm SINE Alu 1 93 -54 1 1302 887 213 0 23 chr6 94095919 94096003 -55421034 + ID SINE ID 2 81 -143 1 1302 368 267 40 0 chr6 94096003 94096104 -55420933 + B1F SINE Alu 1 105 -44 1 1302 254 135 0 37 chr6 94096105 94096159 -55420878 + G-rich Low_complexity Low_complexity 5 56 0 1 1302 22 56 0 0 chr6 94096262 94096298 -55420739 + AT_rich Low_complexity Low_complexity 1 36 0 1 1302 709 293 31 28 chr6 94096906 94097194 -55419843 + B4A SINE B4 4 292 0 1 1302 253 286 14 0 chr6 94097699 94097769 -55419268 + ID4 SINE ID 2 72 -11 1 1302 372 158 0 0 chr6 94098811 94098887 -55418150 + (CCCTAA)n Simple_repeat Simple_repeat 1 76 0 1 1302 453 180 0 0 chr6 94098975 94099064 -55417973 + (TATG)n Simple_repeat Simple_repeat 3 91 0 1 1302 22 0 0 0 chr6 94100331 94100353 -55416684 + AT_rich Low_complexity Low_complexity 1 22 0 1 1302 1086 242 128 68 chr6 94100632 94101002 -55416035 + RMER5 LTR ERV1 16 432 -102 1 1302 2170 209 15 63 chr6 94101002 94101539 -55415498 + RLTR18B LTR ERVK 1 511 -1 1 1302 1086 242 128 68 chr6 94101539 94101651 -55415386 + RMER5 LTR ERV1 433 527 -7 1 1302 515 217 7 14 chr6 94102070 94102210 -55414827 + B1_Mur1 SINE Alu 11 149 0 1 1302 421 211 0 11 chr6 94102578 94102669 -55414368 + RSINE1 SINE B4 56 145 -20 1 1302 315 0 0 0 chr6 94103220 94103255 -55413782 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1302 405 0 0 0 chr6 94104693 94104738 -55412299 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1302 233 281 84 12 chr6 94104941 94105024 -55412013 + B4A SINE B4 85 173 -119 1 1302 277 280 27 0 chr6 94104959 94105034 -55412003 + PB1D10 SINE Alu 20 96 -21 1 1302 2648 202 34 22 chr6 94105059 94105655 -55411382 + RLTR18 LTR ERVK 14 616 0 1 1302 260 254 0 0 chr6 94105712 94105767 -55411270 + PB1 SINE Alu 6 60 -67 1 1302 189 229 0 0 chr6 94105839 94105887 -55411150 + (CAGGA)n Simple_repeat Simple_repeat 3 50 0 1 1302 22 0 0 0 chr6 94106031 94106053 -55410984 + AT_rich Low_complexity Low_complexity 1 22 0 1 1302 278 236 26 65 chr6 94107566 94107643 -55409394 + RSINE1 SINE B4 35 108 -57 1 1302 1075 204 25 10 chr6 94107673 94107871 -55409166 + B3 SINE B2 5 205 -11 1 1303 189 0 0 0 chr6 94109785 94109806 -55407231 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1303 234 260 0 40 chr6 94110707 94110783 -55406254 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 1 1303 640 227 0 0 chr6 94111027 94111146 -55405891 + B1_Mur1 SINE Alu 23 141 -8 1 1303 590 0 14 0 chr6 94111150 94111220 -55405817 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1 1303 637 135 0 0 chr6 94112115 94112219 -55404818 + B2_Mm2 SINE B2 4 107 -88 1 1303 235 317 0 58 chr6 94112556 94112643 -55404394 - ID4_ SINE ID -1 82 1 1 1303 217 367 12 12 chr6 94112695 94112775 -55404262 + ID4 SINE ID 2 81 -2 1 1303 689 227 0 0 chr6 94112824 94112956 -55404081 + RSINE1 SINE B4 3 134 -31 1 1303 228 248 171 31 chr6 94116697 94116826 -55400211 - MER5C DNA MER1_type -127 186 40 1 1303 655 299 46 121 chr6 94117304 94117677 -55399360 + MER2 DNA MER2_type 1 345 0 1 1303 358 182 0 0 chr6 94117869 94117935 -55399102 - MTC LTR MaLR -354 67 2 1 1303 184 77 51 0 chr6 94118877 94118916 -55398121 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1303 204 297 47 0 chr6 94120388 94120452 -55396585 + MIRc SINE MIR 84 150 -118 1 1303 267 360 0 0 chr6 94120532 94120607 -55396430 + B1F SINE Alu 3 77 -72 1 1303 1152 75 0 0 chr6 94120608 94120754 -55396283 + B1_Mus2 SINE Alu 2 147 0 1 1303 250 312 13 152 chr6 94120754 94120827 -55396210 + ID_B1 SINE B4 155 212 -12 1 1303 583 315 0 0 chr6 94121835 94122000 -55395037 + RSINE1 SINE B4 1 165 0 1 1303 543 379 27 15 chr6 94122264 94122524 -55394513 - B4A SINE B4 -3 289 27 1 1303 661 220 196 0 chr6 94122830 94123003 -55394034 - B3 SINE B2 -6 210 4 1 1303 794 123 186 24 chr6 94123018 94123185 -55393852 - B2_Mm2 SINE B2 0 195 2 1 1303 863 193 192 6 chr6 94123357 94123539 -55393498 + B3 SINE B2 1 216 0 1 1303 743 223 7 20 chr6 94123610 94123761 -55393276 + B1_Mur3 SINE Alu 1 149 0 1 1303 689 272 37 37 chr6 94124212 94124510 -55392527 + L1MC1 LINE L1 5429 5726 -607 1 1303 400 268 111 101 chr6 94124575 94124891 -55392146 + L1MC1 LINE L1 6014 6332 -1 1 1303 686 18 26 35 chr6 94125476 94125592 -55391445 + (GAGAA)n Simple_repeat Simple_repeat 4 118 0 1 1303 381 275 134 36 chr6 94126361 94126570 -55390467 - B4A SINE B4 -5 287 8 1 1303 253 280 91 26 chr6 94126656 94126733 -55390304 + MTEb LTR MaLR 52 133 -246 1 1303 350 253 109 52 chr6 94127738 94127872 -55389165 - B4 SINE B4 -23 269 139 1 1303 251 328 91 71 chr6 94128734 94128901 -55388136 + B4 SINE B4 2 170 -122 1 1303 1272 105 21 0 chr6 94128901 94129091 -55387946 + B2_Mm2 SINE B2 1 194 -1 1 1303 251 328 91 71 chr6 94129091 94129133 -55387904 + B4 SINE B4 171 215 -77 1 1303 48 53 0 0 chr6 94129182 94129258 -55387779 + AT_rich Low_complexity Low_complexity 1 76 0 1 1303 330 103 14 42 chr6 94129335 94129406 -55387631 + (TGGA)n Simple_repeat Simple_repeat 2 70 0 1 1303 181 265 71 24 chr6 94129755 94129840 -55387197 + MIR SINE MIR 118 206 -56 1 1303 581 304 97 4 chr6 94129843 94130110 -55386927 + B4A SINE B4 1 292 0 1 1303 375 121 0 0 chr6 94130111 94130169 -55386868 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1303 681 268 46 21 chr6 94130520 94130714 -55386323 + ID_B1 SINE B4 4 202 -22 1 1303 208 319 84 60 chr6 94131217 94131384 -55385653 - MIR SINE MIR -78 184 14 1 1303 252 0 0 0 chr6 94131385 94131413 -55385624 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1303 978 135 0 0 chr6 94133121 94133262 -55383775 + B1_Mus1 SINE Alu 1 141 -7 1 1303 237 260 26 0 chr6 94134515 94134592 -55382445 + ID4_ SINE ID 1 79 -4 2 1303 333 230 21 119 chr6 94135252 94135293 -55381744 + MT2B LTR ERVL 127 255 -346 2 1303 483 235 0 0 chr6 94135293 94135395 -55381642 + B1_Mur2 SINE Alu 1 102 -47 2 1303 217 216 0 86 chr6 94137428 94137509 -55379528 - ID4 SINE ID -9 74 1 2 1303 818 254 72 5 chr6 94137626 94137820 -55379217 + B3 SINE B2 1 207 -9 2 1303 255 31 0 0 chr6 94137980 94138012 -55379025 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1303 657 186 63 14 chr6 94138082 94138224 -55378813 + B1_Mur3 SINE Alu 1 149 0 2 1303 341 303 194 0 chr6 94138364 94138539 -55378498 + ID_B1 SINE B4 12 220 -4 2 1303 1340 85 37 5 chr6 94138599 94138788 -55378249 + B2_Mm2 SINE B2 1 195 0 2 1303 437 0 19 0 chr6 94138967 94139020 -55378017 + (GTTTG)n Simple_repeat Simple_repeat 2 55 0 2 1303 317 368 68 34 chr6 94141021 94141257 -55375780 - MLT1A0 LTR MaLR -101 264 21 2 1303 724 283 42 0 chr6 94141452 94141643 -55375394 + B4 SINE B4 94 292 0 2 1303 823 190 173 0 chr6 94141876 94142026 -55375011 + B3 SINE B2 1 164 -52 2 1303 378 107 0 0 chr6 94142026 94142082 -55374955 + (CATA)n Simple_repeat Simple_repeat 3 58 0 2 1303 823 190 173 0 chr6 94142082 94142110 -55374927 + B3 SINE B2 165 209 -7 2 1303 419 306 18 0 chr6 94142124 94142235 -55374802 - B3A SINE B2 -77 121 9 2 1303 182 302 111 44 chr6 94142331 94142466 -55374571 + MIR SINE MIR 117 260 -2 2 1303 249 282 0 40 chr6 94142490 94142564 -55374473 + ID4 SINE ID 9 79 -4 2 1303 348 250 0 14 chr6 94143589 94143662 -55373375 + B1F SINE Alu 15 86 -63 2 1303 441 0 0 0 chr6 94144111 94144160 -55372877 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1303 425 211 9 37 chr6 94144910 94145018 -55372019 + MTD LTR MaLR 6 110 -309 2 1303 840 123 56 45 chr6 94145033 94145211 -55371826 + MTD LTR MaLR 237 416 -3 2 1303 231 289 9 85 chr6 94146560 94146666 -55370371 + PB1 SINE Alu 27 124 -3 2 1303 350 288 30 58 chr6 94146846 94147036 -55370001 + RSINE1 SINE B4 5 178 -114 2 1303 414 0 0 0 chr6 94147043 94147089 -55369948 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1303 285 272 115 94 chr6 94150672 94150924 -55366113 + RLTR18 LTR ERVK 196 565 -51 2 1303 752 214 76 30 chr6 94152202 94152400 -55364637 + B3 SINE B2 7 213 -3 2 1303 453 246 60 49 chr6 94152452 94152636 -55364401 - Charlie4a DNA MER1_type -15 493 308 2 1303 461 218 81 47 chr6 94152700 94152840 -55364197 + ID_B1 SINE B4 78 213 -11 2 1303 322 277 110 49 chr6 94153450 94153613 -55363424 - MIRb SINE MIR -29 239 67 2 1303 186 345 44 35 chr6 94155002 94155116 -55361921 + MIRb SINE MIR 26 140 -128 2 1303 198 103 0 0 chr6 94155422 94155451 -55361586 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 2 1303 423 0 0 0 chr6 94156248 94156295 -55360742 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1303 279 280 96 22 chr6 94156523 94156658 -55360379 - MIRb SINE MIR -111 157 13 2 1303 229 254 15 45 chr6 94156944 94157010 -55360027 + ID4_ SINE ID 19 82 -1 2 1303 560 202 295 47 chr6 94157268 94157502 -55359535 + B4A SINE B4 1 292 0 2 1303 302 292 194 31 chr6 94158796 94158987 -55358050 - ID_B1 SINE B4 -2 222 1 2 1303 502 293 52 57 chr6 94159013 94159223 -55357814 + B3A SINE B2 2 210 -6 2 1303 648 184 87 14 chr6 94159953 94160091 -55356946 + B1_Mur2 SINE Alu 1 148 -1 2 1303 200 135 0 26 chr6 94160560 94160598 -55356439 + A-rich Low_complexity Low_complexity 4 40 0 2 1303 408 245 92 0 chr6 94161549 94161647 -55355390 + PB1 SINE Alu 5 111 -16 2 1303 2009 96 31 25 chr6 94161957 94162279 -55354758 + ORR1A4 LTR MaLR 1 324 -5 2 1303 364 242 181 38 chr6 94163426 94163559 -55353478 - RSINE1 SINE B4 -11 154 3 2 1303 286 314 107 45 chr6 94164326 94164503 -55352534 - MIR SINE MIR -44 218 31 2 1303 248 331 69 0 chr6 94164563 94164693 -55352344 + L1ME2z LINE L1 6282 6420 -24 2 1303 792 269 15 25 chr6 94164705 94164907 -55352130 + B3 SINE B2 6 205 -11 2 1303 218 176 20 0 chr6 94164907 94164958 -55352079 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1303 407 319 24 30 chr6 94165831 94165996 -55351041 + L1MC LINE L1 5570 5733 -2149 2 1303 428 247 157 0 chr6 94166079 94166213 -55350824 + B3A SINE B2 1 159 -39 2 1303 672 36 0 0 chr6 94166213 94166296 -55350741 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 1303 428 247 157 0 chr6 94166296 94166327 -55350710 + B3A SINE B2 160 191 -7 2 1303 1436 76 0 21 chr6 94166386 94166575 -55350462 + B2_Mm2 SINE B2 1 185 -10 2 1303 277 298 187 26 chr6 94167264 94167419 -55349618 - MER20 DNA MER1_type -1 218 39 2 1303 647 130 17 0 chr6 94167840 94167955 -55349082 + URR1B DNA MER1_type 109 225 0 2 1303 229 195 24 0 chr6 94168507 94168548 -55348489 - RSINE1 SINE B4 -119 46 5 2 1303 381 266 45 45 chr6 94168750 94168884 -55348153 + ORR1E LTR MaLR 42 175 -184 2 1303 385 277 43 28 chr6 94170494 94170635 -55346402 - MLT1F2 LTR MaLR 0 560 418 2 1303 192 40 0 0 chr6 94171559 94171584 -55345453 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 2 1303 384 294 45 18 chr6 94171600 94171711 -55345326 - B4 SINE B4 -34 258 145 2 1303 1015 174 27 41 chr6 94171739 94171960 -55345077 + URR1B DNA MER1_type 8 225 0 2 1303 320 207 67 14 chr6 94172092 94172185 -55344852 - B1_Mus1 SINE Alu -5 112 10 2 1303 303 297 45 76 chr6 94172129 94172286 -55344751 - B4A SINE B4 -140 152 1 2 1303 598 266 21 31 chr6 94172696 94172890 -55344147 + MER2 DNA MER2_type 84 275 -70 2 1303 532 318 0 0 chr6 94172945 94173096 -55343941 - RSINE1 SINE B4 -13 152 2 2 1303 24 53 0 0 chr6 94173096 94173134 -55343903 + AT_rich Low_complexity Low_complexity 1 38 0 2 1303 695 281 54 74 chr6 94173978 94174331 -55342706 + ORR1E LTR MaLR 11 356 -3 2 1303 200 174 109 0 chr6 94174720 94174766 -55342271 - MIR SINE MIR -142 120 70 2 1303 826 259 151 46 chr6 94174857 94175116 -55341921 - B4 SINE B4 -5 287 2 2 1303 873 170 0 13 chr6 94175583 94175732 -55341305 + B1_Mur1 SINE Alu 2 148 -1 2 1303 396 0 0 0 chr6 94175847 94175891 -55341146 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1303 383 241 25 0 chr6 94176730 94176809 -55340228 + ID4 SINE ID 1 81 -2 2 1303 329 306 56 0 chr6 94177564 94177672 -55339365 - B1F2 SINE Alu -30 119 6 2 1303 582 159 0 0 chr6 94177804 94177911 -55339126 + GA-rich Low_complexity Low_complexity 2 108 0 2 1303 2560 166 96 2 chr6 94178045 94178534 -55338503 + Lx9 LINE L1 6884 7418 -226 2 1303 1041 111 0 0 chr6 94178537 94178791 -55338246 + (TG)n Simple_repeat Simple_repeat 1 254 0 2 1303 584 197 34 0 chr6 94178815 94178932 -55338105 + B1_Mur2 SINE Alu 29 149 0 2 1303 425 92 70 44 chr6 94178985 94179099 -55337938 + Lx9 LINE L1 7524 7640 -4 2 1303 22 0 0 0 chr6 94179105 94179127 -55337910 + AT_rich Low_complexity Low_complexity 1 22 0 2 1303 470 288 8 0 chr6 94179472 94179597 -55337440 + B1_Mur1 SINE Alu 19 144 -5 2 1303 656 215 34 14 chr6 94179988 94180134 -55336903 + B1_Mur1 SINE Alu 1 149 0 2 1303 853 222 32 79 chr6 94180327 94180610 -55336427 + B4 SINE B4 7 270 -22 2 1303 400 216 124 31 chr6 94181783 94181912 -55335125 - B1F SINE Alu -1 148 8 2 1303 437 229 59 50 chr6 94182096 94182298 -55334739 - MamRep4096 DNA hAT? -170 256 53 2 1303 543 16 0 0 chr6 94182718 94182782 -55334255 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1303 460 241 152 0 chr6 94182787 94182899 -55334138 + B4A SINE B4 102 230 -62 2 1303 785 209 7 0 chr6 94182899 94183038 -55333999 + B1_Mus2 SINE Alu 1 140 -7 2 1303 241 303 30 45 chr6 94183199 94183349 -55333688 - MIRb SINE MIR -70 198 46 2 1303 2008 210 14 58 chr6 94183370 94183804 -55333233 - Lx6 LINE L1 -1 7459 7045 2 1303 660 219 60 0 chr6 94183808 94183959 -55333078 + Lx6 LINE L1 6247 6406 -1054 2 1303 2687 193 112 8 chr6 94185421 94185464 -55331573 + Lx7 LINE L1 6664 6706 -990 2 1303 567 0 0 0 chr6 94185464 94185527 -55331510 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 2 1303 2687 193 112 8 chr6 94185527 94186083 -55330954 + Lx7 LINE L1 6707 7325 -371 2 1303 211 167 16 48 chr6 94186105 94186168 -55330869 + T-rich Low_complexity Low_complexity 5 65 0 2 1303 344 218 33 39 chr6 94186163 94186344 -55330693 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1303 1071 154 278 11 chr6 94186349 94186472 -55330565 + Lx7 LINE L1 7355 7501 -195 2 1303 317 43 0 42 chr6 94186472 94186520 -55330517 + (TTATA)n Simple_repeat Simple_repeat 2 47 0 2 1303 1071 154 278 11 chr6 94186520 94186666 -55330371 + Lx7 LINE L1 7502 7696 0 2 1303 215 325 88 64 chr6 94186686 94186857 -55330180 - MIRc SINE MIR -66 202 28 2 1303 766 147 90 66 chr6 94186965 94187132 -55329905 - Lx5 LINE L1 0 7050 6880 2 1303 482 280 40 55 chr6 94187382 94187582 -55329455 + RMER30 DNA MER1_type 2 198 -4 2 1303 226 284 30 0 chr6 94187657 94187724 -55329313 - ID4_ SINE ID -14 69 1 2 1303 228 135 0 0 chr6 94187954 94187991 -55329046 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1303 447 106 0 0 chr6 94187991 94188057 -55328980 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1303 424 221 252 0 chr6 94189045 94189172 -55327865 + ID_B1 SINE B4 5 163 -61 2 1303 276 261 0 14 chr6 94189342 94189412 -55327625 - MER5A1 DNA MER1_type -35 131 63 2 1303 944 196 103 0 chr6 94189761 94189965 -55327072 - URR1A DNA MER1_type 0 226 2 2 1303 265 248 135 5 chr6 94190161 94190196 -55326841 - B1_Mus1 SINE Alu -5 145 18 2 1303 327 235 123 0 chr6 94190196 94190277 -55326760 - ID_B1 SINE B4 -36 188 98 3 1303 700 241 99 32 chr6 94190598 94190851 -55326186 - B4A SINE B4 -21 271 2 3 1303 252 293 94 107 chr6 94191579 94191728 -55325309 - RSINE1 SINE B4 -16 149 3 3 1303 21 36 0 0 chr6 94192049 94192077 -55324960 + AT_rich Low_complexity Low_complexity 1 28 0 3 1303 224 316 42 0 chr6 94192115 94192210 -55324827 + MIRb SINE MIR 63 161 -107 3 1303 248 53 26 0 chr6 94194529 94194567 -55322470 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1303 522 192 45 53 chr6 94194951 94195083 -55321954 + B1_Mur1 SINE Alu 6 136 -13 3 1303 721 202 84 69 chr6 94195069 94195271 -55321766 + B3 SINE B2 8 212 -4 3 1303 1468 133 93 30 chr6 94195823 94196125 -55320912 + ORR1A4 LTR MaLR 1 321 -8 3 1303 798 182 35 0 chr6 94196350 94196493 -55320544 + B1_Mur2 SINE Alu 2 149 0 3 1303 347 214 0 22 chr6 94196504 94196595 -55320442 + GA-rich Low_complexity Low_complexity 4 92 0 3 1303 928 226 288 0 chr6 94197551 94197860 -55319177 + MTD LTR MaLR 8 405 -14 3 1303 465 271 112 50 chr6 94198347 94198588 -55318449 - MER2 DNA MER2_type -6 339 84 3 1303 233 229 21 0 chr6 94199030 94199078 -55317959 + ID_B1 SINE B4 52 100 -124 3 1303 252 122 0 0 chr6 94199279 94199320 -55317717 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1303 746 307 28 58 chr6 94199370 94199661 -55317376 - RCHARR1 DNA MER1_type -691 283 2 3 1303 320 328 24 8 chr6 94200522 94200648 -55316389 + MTEa LTR MaLR 11 138 -221 3 1303 213 39 0 0 chr6 94200714 94200740 -55316297 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1303 534 31 0 0 chr6 94200740 94200803 -55316234 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 1303 334 234 81 36 chr6 94200813 94200924 -55316113 + MTEa LTR MaLR 258 373 -6 3 1303 317 317 0 10 chr6 94201395 94201497 -55315540 + BC1_Mm scRNA scRNA 1 101 -51 3 1303 304 368 40 40 chr6 94201497 94201556 -55315481 + ID_B1 SINE B4 1 156 -68 3 1303 612 216 132 26 chr6 94201556 94201746 -55315291 + B3 SINE B2 3 212 -4 3 1303 304 368 40 40 chr6 94201746 94201782 -55315255 + ID_B1 SINE B4 157 198 -26 3 1303 189 211 0 0 chr6 94202267 94202324 -55314713 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 3 1303 225 0 0 0 chr6 94202548 94202573 -55314464 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1303 379 239 32 11 chr6 94202700 94202793 -55314244 - B4A SINE B4 -17 275 181 3 1303 282 116 0 0 chr6 94202793 94202836 -55314201 + (GGA)n Simple_repeat Simple_repeat 2 44 0 3 1303 198 71 0 0 chr6 94202849 94202877 -55314160 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1303 515 262 70 7 chr6 94202890 94203032 -55314005 - B4A SINE B4 -141 151 1 3 1303 513 239 79 30 chr6 94203045 94203209 -55313828 + RLTR12B LTR ERVK 11 182 -346 3 1303 1197 68 0 0 chr6 94203370 94203517 -55313520 + B1_Mus2 SINE Alu 1 147 0 3 1303 30 27 0 0 chr6 94205520 94205557 -55311480 + AT_rich Low_complexity Low_complexity 1 37 0 3 1303 635 84 11 0 chr6 94207494 94207589 -55309448 + (GGGA)n Simple_repeat Simple_repeat 3 98 0 3 1303 409 253 126 97 chr6 94207718 94207924 -55309113 + MER20 DNA MER1_type 7 218 -1 3 1303 222 262 276 8 chr6 94207942 94208069 -55308968 + ID_B1 SINE B4 60 220 -4 3 1303 198 186 23 0 chr6 94208116 94208159 -55308878 + MIRm SINE MIR 95 138 -138 3 1303 204 40 0 0 chr6 94208288 94208313 -55308724 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1303 1202 41 14 0 chr6 94209869 94210014 -55307023 + B1_Mus2 SINE Alu 1 147 0 3 1303 627 48 0 0 chr6 94210339 94210423 -55306614 + BC1_Mm scRNA scRNA 1 84 -68 3 1303 225 200 100 0 chr6 94210769 94210829 -55306208 + ID4 SINE ID 15 80 -3 3 1303 324 70 0 0 chr6 94210830 94210873 -55306164 + (CACAA)n Simple_repeat Simple_repeat 2 44 0 3 1303 680 191 0 37 chr6 94211456 94211592 -55305445 + B1_Mur1 SINE Alu 19 149 0 3 1303 417 264 18 26 chr6 94211805 94211918 -55305119 - PB1D10 SINE Alu 0 117 6 3 1303 278 239 17 2 chr6 94211862 94211942 -55305095 - B4 SINE B4 -145 147 67 3 1303 506 306 29 29 chr6 94212859 94213034 -55304003 + ID_B1 SINE B4 50 224 0 3 1303 1532 32 0 46 chr6 94213059 94213254 -55303783 + B2_Mm1a SINE B2 2 187 -6 3 1303 502 295 33 33 chr6 94213304 94213574 -55303463 + L1MB2 LINE L1 5725 5994 -177 3 1303 341 280 40 0 chr6 94214380 94214480 -55302557 - MIR SINE MIR -93 169 66 3 1303 304 299 79 33 chr6 94215156 94215308 -55301729 - MER20 DNA MER1_type -58 161 3 3 1303 664 215 34 27 chr6 94215470 94215618 -55301419 + B1_Mur1 SINE Alu 1 149 0 3 1303 553 256 79 56 chr6 94216031 94216209 -55300828 + B3A SINE B2 1 182 -16 3 1303 437 296 47 21 chr6 94216543 94216733 -55300304 - MER3 DNA MER1_type -10 199 5 3 1303 214 322 49 80 chr6 94219047 94219110 -55297927 + B4A SINE B4 50 114 -178 3 1303 333 0 0 0 chr6 94219110 94219147 -55297890 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1303 214 322 49 80 chr6 94219147 94219245 -55297792 + B4A SINE B4 115 206 -86 3 1303 2166 145 54 24 chr6 94219335 94219744 -55297293 - MTC LTR MaLR 0 421 1 3 1303 510 61 0 0 chr6 94219810 94219876 -55297161 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1303 190 317 78 10 chr6 94220213 94220315 -55296722 - L2b LINE L2 -2 3373 3265 3 1303 443 339 74 42 chr6 94220372 94220667 -55296370 + MER102a DNA MER1_type 6 307 -23 3 1303 418 207 35 0 chr6 94221004 94221091 -55295946 + B1_Mur1 SINE Alu 28 117 -32 3 1303 180 0 0 0 chr6 94221185 94221205 -55295832 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1303 1246 41 0 0 chr6 94221205 94221352 -55295685 - B1_Mm SINE Alu 0 147 1 3 1303 252 0 0 0 chr6 94221415 94221443 -55295594 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1303 234 0 0 0 chr6 94221447 94221473 -55295564 + (TGGA)n Simple_repeat Simple_repeat 4 29 0 3 1303 211 220 0 0 chr6 94221617 94221667 -55295370 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1303 22 35 0 0 chr6 94221715 94221744 -55295293 + AT_rich Low_complexity Low_complexity 1 29 0 3 1303 360 0 0 0 chr6 94222966 94223006 -55294031 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1303 723 223 207 35 chr6 94223189 94223544 -55293493 - MTD LTR MaLR -14 405 4 3 1303 229 240 172 30 chr6 94224856 94224955 -55292082 + B1F SINE Alu 36 148 -1 3 1303 216 230 143 48 chr6 94225523 94225628 -55291409 - L2a LINE L2 -8 3418 3304 3 1303 990 56 23 9 chr6 94225779 94225922 -55291115 - B1_Mus1 SINE Alu -4 144 21 3 1303 194 315 75 21 chr6 94225961 94226055 -55290982 - L2 LINE L2 -464 2955 2857 3 1303 295 261 80 29 chr6 94227364 94227375 -55289662 + ID_B1 SINE B4 77 218 -3 3 1303 498 210 97 0 chr6 94227375 94227499 -55289538 + B1_Mur2 SINE Alu 8 143 -6 3 1303 510 260 57 31 chr6 94227864 94228023 -55289014 + RSINE1 SINE B4 3 165 0 3 1303 266 252 163 65 chr6 94228159 94228282 -55288755 + B3A SINE B2 46 180 -18 3 1303 426 271 63 14 chr6 94228323 94228465 -55288572 + B1F1 SINE Alu 1 149 0 3 1303 303 71 0 0 chr6 94228601 94228643 -55288394 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1303 182 231 0 0 chr6 94229546 94229585 -55287452 + MIRc SINE MIR 94 132 -136 3 1303 429 272 165 35 chr6 94229881 94230281 -55286756 + L1ME2z LINE L1 5689 6123 -39 3 1303 204 163 23 23 chr6 94231164 94231208 -55285829 + GA-rich Low_complexity Low_complexity 4 47 0 3 1303 391 277 28 50 chr6 94232154 94232336 -55284701 + MIRb SINE MIR 85 262 -6 3 1303 27 29 0 0 chr6 94233919 94233953 -55283084 + GC_rich Low_complexity Low_complexity 1 34 0 3 1303 362 57 19 0 chr6 94235022 94235075 -55281962 + (CCCCCA)n Simple_repeat Simple_repeat 3 56 0 3 1303 314 241 38 12 chr6 94235297 94235377 -55281660 + PB1D7 SINE Alu 5 86 -34 3 1303 264 271 122 8 chr6 94235377 94235420 -55281617 + ID_B1 SINE B4 86 222 -2 3 1303 181 53 79 0 chr6 94235473 94235511 -55281526 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 3 1303 666 247 20 33 chr6 94235760 94235980 -55281057 - MTD LTR MaLR -172 247 11 3 1303 334 271 120 86 chr6 94236011 94236142 -55280895 - MTD-int LTR MaLR -31 1227 1070 3 1303 1385 85 5 21 chr6 94236142 94236335 -55280702 - B2_Mm1t SINE B2 -2 191 2 3 1303 334 271 120 86 chr6 94236335 94236437 -55280600 - MTD-int LTR MaLR -189 1069 987 3 1303 506 288 0 0 chr6 94237127 94237252 -55279785 - B1_Mur1 SINE Alu -7 142 18 3 1303 358 250 21 10 chr6 94237318 94237415 -55279622 - ID_B1 SINE B4 -4 220 123 3 1303 339 154 0 0 chr6 94237423 94237488 -55279549 + (CATA)n Simple_repeat Simple_repeat 2 66 0 3 1303 936 224 10 5 chr6 94237500 94237706 -55279331 - B3 SINE B2 -6 210 4 3 1303 1615 201 166 36 chr6 94238056 94238531 -55278506 - MTD-int LTR MaLR -721 537 1 3 1303 1602 201 24 86 chr6 94238546 94238955 -55278082 - MTD LTR MaLR -35 384 1 3 1303 219 323 143 37 chr6 94239234 94239395 -55277642 - MIR SINE MIR -25 237 60 3 1303 498 214 26 8 chr6 94239742 94239864 -55277173 - B1F2 SINE Alu -12 137 14 3 1303 667 260 21 32 chr6 94239889 94240076 -55276961 - B3A SINE B2 -11 187 3 3 1303 913 163 0 7 chr6 94240161 94240309 -55276728 - B1_Mm SINE Alu 0 147 1 3 1303 700 135 317 24 chr6 94240367 94240534 -55276503 - B3 SINE B2 0 216 1 3 162 879 295 41 4 chr6 94240748 94240993 -55276044 + MTD LTR MaLR 46 299 -120 3 1304 851 140 0 16 chr6 94242590 94242756 -55274281 + ORR1B1 LTR MaLR 1 152 -242 3 1304 1263 65 35 61 chr6 94242784 94242981 -55274056 - B2_Mm2 SINE B2 -3 192 1 3 1304 1189 68 0 0 chr6 94243594 94243741 -55273296 - B1_Mus2 SINE Alu 0 147 1 3 1304 1181 85 107 11 chr6 94243770 94243948 -55273089 + B2_Mm2 SINE B2 1 195 0 4 1304 386 206 118 144 chr6 94244127 94244280 -55272757 + B3A SINE B2 3 151 -47 4 1304 210 217 0 21 chr6 94244510 94244557 -55272480 + (TTA)n Simple_repeat Simple_repeat 1 46 0 4 1304 560 151 93 9 chr6 94245463 94245570 -55271467 - B1_Mur2 SINE Alu -29 120 5 4 1304 437 129 0 0 chr6 94245937 94246007 -55271030 + B1_Mur2 SINE Alu 45 114 -35 4 1304 603 51 0 0 chr6 94246813 94246892 -55270145 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 1304 235 231 15 15 chr6 94247199 94247265 -55269772 - PB1D10 SINE Alu -9 108 43 4 1304 270 0 0 0 chr6 94247500 94247530 -55269507 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 4 1304 2356 207 84 13 chr6 94247533 94248056 -55268981 - Lx5 LINE L1 -42 7008 6449 4 1304 267 103 0 0 chr6 94248669 94248708 -55268329 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1304 452 278 43 36 chr6 94248710 94248848 -55268189 - RSINE1 SINE B4 -14 151 13 4 1304 487 286 0 8 chr6 94248891 94249018 -55268019 - B1F1 SINE Alu -9 140 15 4 1304 444 19 0 0 chr6 94249098 94249151 -55267886 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1304 221 247 110 0 chr6 94249332 94249405 -55267632 + B1_Mur2 SINE Alu 69 149 0 4 1304 818 183 7 7 chr6 94249673 94249816 -55267221 - B1_Mus1 SINE Alu -5 143 1 4 1304 24 53 0 0 chr6 94249828 94249866 -55267171 + AT_rich Low_complexity Low_complexity 1 38 0 4 1304 972 171 11 17 chr6 94249890 94250069 -55266968 - B2_Mm2 SINE B2 -17 178 1 4 1304 377 255 20 39 chr6 94250294 94250396 -55266641 + RSINE1 SINE B4 5 104 -61 4 1304 21 0 0 0 chr6 94250476 94250497 -55266540 + AT_rich Low_complexity Low_complexity 1 21 0 4 1304 555 263 32 35 chr6 94250803 94251019 -55266018 + ID_B1 SINE B4 78 292 0 4 1304 261 0 0 0 chr6 94251038 94251067 -55265970 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 4 1304 295 169 260 0 chr6 94251067 94251144 -55265893 - PB1D9 SINE Alu -12 108 12 4 1304 976 270 48 103 chr6 94251481 94251677 -55265360 + MTEa LTR MaLR 5 181 -198 4 1304 843 135 237 17 chr6 94251677 94251850 -55265187 + B3 SINE B2 1 211 -5 4 1304 976 270 48 103 chr6 94251850 94252050 -55264987 + MTEa LTR MaLR 182 379 0 4 1304 225 0 0 0 chr6 94252422 94252447 -55264590 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1304 1176 160 82 5 chr6 94252932 94253139 -55263898 + URR1B DNA MER1_type 3 225 0 4 1304 257 293 13 0 chr6 94254471 94254546 -55262491 + Cheshire DNA MER1_type 46 121 -2299 4 1304 1651 42 0 0 chr6 94254727 94254920 -55262117 - B2_Mm1a SINE B2 0 193 1 4 1304 263 373 54 5 chr6 94254920 94255106 -55261931 - MIRc SINE MIR -48 220 23 4 1304 669 269 7 0 chr6 94255556 94255701 -55261336 - B1F SINE Alu -3 146 1 4 1304 900 289 140 6 chr6 94255985 94256350 -55260687 + L1MB8 LINE L1 5377 5790 -384 4 1304 266 224 12 0 chr6 94256351 94256436 -55260601 + (TA)n Simple_repeat Simple_repeat 1 86 0 4 1304 357 177 38 0 chr6 94256436 94256515 -55260522 + L1MB8 LINE L1 5782 5863 -315 4 1304 543 210 53 53 chr6 94256570 94256721 -55260316 - ORR1E LTR MaLR -204 155 5 4 1304 396 276 8 8 chr6 94256919 94257036 -55260001 + L1MA5A LINE L1 6179 6295 -2 4 1304 244 367 13 0 chr6 94257055 94257134 -55259903 + ID4_ SINE ID 1 80 -3 4 1304 951 166 0 20 chr6 94257198 94257346 -55259691 + B1_Mur2 SINE Alu 5 149 0 4 1304 355 306 43 140 chr6 94257501 94257601 -55259436 - RMER30 DNA MER1_type -1 201 100 4 1304 1410 76 16 5 chr6 94257601 94257786 -55259251 - B2_Mm2 SINE B2 -6 189 3 4 1304 355 306 43 140 chr6 94257786 94257871 -55259166 - RMER30 DNA MER1_type -103 99 34 4 1304 202 56 56 0 chr6 94258838 94258874 -55258163 + (TGGGGG)n Simple_repeat Simple_repeat 2 39 0 4 1304 254 87 22 0 chr6 94259042 94259088 -55257949 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1304 302 0 26 0 chr6 94259177 94259215 -55257822 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 4 1304 925 149 0 20 chr6 94259461 94259612 -55257425 - B1_Mus1 SINE Alu 0 148 1 4 1304 215 395 9 0 chr6 94259896 94260005 -55257032 - L2a LINE L2 -295 3131 3022 4 1304 390 222 8 100 chr6 94260819 94260897 -55256140 + RSINE1 SINE B4 3 78 -87 4 1304 1616 228 83 28 chr6 94260897 94261294 -55255743 - MTD LTR MaLR 0 419 1 4 1304 390 222 8 100 chr6 94261294 94261345 -55255692 + RSINE1 SINE B4 79 120 -45 4 1304 420 280 13 47 chr6 94261324 94261474 -55255563 + ID_B1 SINE B4 73 217 -7 4 1304 806 153 15 0 chr6 94261343 94261480 -55255557 + B1_Mur4 SINE Alu 11 149 -1 4 1304 234 0 0 0 chr6 94261480 94261506 -55255531 + (TCC)n Simple_repeat Simple_repeat 3 28 0 4 1304 342 0 0 0 chr6 94261907 94261945 -55255092 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 4 1304 397 300 125 0 chr6 94261982 94262102 -55254935 - RSINE1 SINE B4 -28 137 3 4 1304 640 69 40 0 chr6 94262105 94262206 -55254831 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 4 1304 262 323 135 0 chr6 94262215 94262311 -55254726 - PB1 SINE Alu -18 109 1 4 1304 226 263 0 0 chr6 94263017 94263074 -55253963 + tRNA-Ala-GCY_ tRNA tRNA 11 67 -8 4 1304 267 259 0 0 chr6 94263076 94263134 -55253903 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1304 273 29 0 0 chr6 94263199 94263233 -55253804 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1304 2419 98 186 0 chr6 94264184 94264550 -55252487 - RLTR10C LTR ERVK -2 434 1 4 1304 1292 175 56 0 chr6 94264550 94264802 -55252235 - ORR1D1-int LTR MaLR -916 454 189 4 1304 1175 207 102 9 chr6 94264803 94265125 -55251912 - ORR1D1 LTR MaLR -22 352 1 4 1304 1161 125 5 43 chr6 94265546 94265730 -55251307 - B2_Mm2 SINE B2 -17 178 2 4 1304 1824 227 50 55 chr6 94266320 94266442 -55250595 - RMER13A LTR ERVK -356 552 412 4 1304 2393 94 22 3 chr6 94266442 94266763 -55250274 - ORR1A2 LTR MaLR 0 327 1 4 1304 1824 209 55 44 chr6 94266763 94267159 -55249878 - RMER13A LTR ERVK -449 411 1 4 1304 748 236 55 104 chr6 94269540 94269658 -55247379 - B4A SINE B4 0 292 193 4 1304 275 297 0 0 chr6 94269658 94269732 -55247305 + ID4_ SINE ID 2 75 -8 4 1304 748 236 55 104 chr6 94269732 94269920 -55247117 - B4A SINE B4 -100 192 1 4 1304 265 260 151 0 chr6 94270255 94270328 -55246709 - B3A SINE B2 -25 173 90 4 1304 353 60 20 0 chr6 94270361 94270411 -55246626 - HAL1-3A_ME LINE L1 -833 2025 1975 4 1304 790 124 20 27 chr6 94270411 94270710 -55246327 + (TG)n Simple_repeat Simple_repeat 1 296 0 4 1304 860 119 17 22 chr6 94270728 94270909 -55246128 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1304 526 102 55 8 chr6 94270921 94271049 -55245988 + (TG)n Simple_repeat Simple_repeat 1 134 0 4 1304 224 275 53 35 chr6 94271054 94271167 -55245870 + L2c LINE L2 3254 3368 -19 4 1304 599 215 454 0 chr6 94271230 94271479 -55245558 - MTEb LTR MaLR 0 379 18 4 1304 487 255 0 0 chr6 94271596 94271698 -55245339 - PB1D10 SINE Alu -13 104 3 4 1304 578 296 137 14 chr6 94272628 94273050 -55243987 - L1MC4 LINE L1 -31 8011 7538 4 1304 297 0 0 0 chr6 94274656 94274689 -55242348 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1304 414 0 0 0 chr6 94274689 94274734 -55242303 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 1304 748 268 80 15 chr6 94274734 94274996 -55242041 + B4A SINE B4 4 282 -10 4 1304 571 248 15 23 chr6 94275571 94275703 -55241334 - B1_Mur1 SINE Alu -8 141 11 4 1304 207 0 0 0 chr6 94275867 94275890 -55241147 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 4 1304 749 236 50 55 chr6 94275912 94276132 -55240905 - ID_B1 SINE B4 -5 219 1 4 1304 243 0 0 0 chr6 94276217 94276244 -55240793 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1304 814 237 62 5 chr6 94276856 94277051 -55239986 + B3 SINE B2 1 206 -10 4 1304 300 299 58 63 chr6 94277228 94277435 -55239602 - MamRep434 DNA TcMar -168 258 53 4 1304 704 256 30 8 chr6 94277521 94277726 -55239311 - B3A SINE B2 0 216 4 4 1304 1490 184 119 12 chr6 94277869 94278204 -55238833 + ORR1C2 LTR MaLR 2 372 -12 4 1304 687 139 16 73 chr6 94278212 94278336 -55238701 + Lx6 LINE L1 6400 6516 -944 4 1304 183 80 0 0 chr6 94278371 94278396 -55238641 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1304 2102 192 52 14 chr6 94278396 94278839 -55238198 + Lx7 LINE L1 6754 7213 -483 4 1304 987 193 46 64 chr6 94278858 94279140 -55237897 + Lx7 LINE L1 7356 7632 -64 4 1304 1992 97 40 49 chr6 94279187 94279512 -55237525 - RLTRETN_Mm LTR ERVK 0 322 1 4 1304 438 53 0 0 chr6 94279899 94279956 -55237081 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 4 1304 538 191 0 37 chr6 94279989 94280125 -55236912 - L1Md_A LINE L1 0 6582 6452 4 1304 280 369 0 19 chr6 94280478 94280583 -55236454 - PB1 SINE Alu -7 120 18 4 1304 522 261 9 0 chr6 94280607 94280718 -55236319 - RSINE1 SINE B4 -51 114 3 4 1304 629 305 0 0 chr6 94280831 94281008 -55236029 - MTEb LTR MaLR 0 379 203 4 1304 710 220 0 8 chr6 94281013 94281146 -55235891 + B1_Mus2 SINE Alu 6 137 -10 4 1304 705 82 0 0 chr6 94281188 94281285 -55235752 + (CAAAA)n Simple_repeat Simple_repeat 1 97 0 4 1304 264 330 143 0 chr6 94281312 94281424 -55235613 - MTEb LTR MaLR -239 140 13 4 1304 548 296 0 12 chr6 94281442 94281613 -55235424 - L1M2 LINE L1 -568 5723 5555 4 1304 632 260 16 62 chr6 94281870 94282063 -55234974 + B3A SINE B2 15 198 0 4 1304 696 232 0 0 chr6 94282206 94282348 -55234689 - RSINE1 SINE B4 -21 144 3 4 1304 309 195 109 13 chr6 94282371 94282511 -55234526 - L1M2 LINE L1 -699 5490 5331 4 1304 317 377 58 0 chr6 94282883 94283021 -55234016 + RSINE1 SINE B4 3 148 -17 4 1304 684 299 102 52 chr6 94283092 94283590 -55233447 - L1MB8 LINE L1 -62 6116 5594 4 1304 29 0 0 0 chr6 94283591 94283620 -55233417 + AT_rich Low_complexity Low_complexity 1 29 0 4 1304 580 249 60 28 chr6 94283819 94284034 -55233003 + B4A SINE B4 67 288 -4 4 1304 486 0 0 0 chr6 94284067 94284121 -55232916 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1304 402 386 92 28 chr6 94285006 94285443 -55231594 + MLT1K LTR MaLR 6 470 -125 4 1304 294 271 128 87 chr6 94285763 94286005 -55231032 + MER112 DNA MER1_type 9 260 -1 5 1304 429 20 0 0 chr6 94286501 94286551 -55230486 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1304 237 320 101 81 chr6 94286701 94286949 -55230088 + MLT1B LTR MaLR 1 253 -137 5 1304 3009 54 0 19 chr6 94287213 94287589 -55229448 - L1Md_F2 LINE L1 -12 6570 6202 5 1304 791 141 163 6 chr6 94287686 94287854 -55229183 + MTD LTR MaLR 20 215 -204 5 1304 1088 211 0 0 chr6 94287854 94288044 -55228993 + B3 SINE B2 3 192 -24 5 1304 355 210 39 39 chr6 94288057 94288075 -55228962 + MTD LTR MaLR 171 192 -204 5 1304 840 56 8 23 chr6 94288075 94288204 -55228833 + (GGGAGA)n Simple_repeat Simple_repeat 6 132 0 5 1304 545 216 74 33 chr6 94288204 94288382 -55228655 + MTD LTR MaLR 193 402 -17 5 1304 198 290 136 64 chr6 94288625 94288726 -55228311 - MIR SINE MIR -82 180 67 5 1304 567 279 16 10 chr6 94288726 94288918 -55228119 + MER53 DNA hAT 1 193 0 5 1304 198 290 136 64 chr6 94288918 94288956 -55228081 - MIR SINE MIR -196 66 31 5 1304 1022 45 11 43 chr6 94289504 94289690 -55227347 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1304 507 135 52 17 chr6 94289752 94289925 -55227112 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1304 365 145 13 0 chr6 94289987 94290063 -55226974 + (TG)n Simple_repeat Simple_repeat 1 77 0 5 1304 730 282 74 28 chr6 94290078 94290362 -55226675 - B4A SINE B4 -1 291 1 5 1304 1385 55 6 0 chr6 94291046 94291358 -55225679 + (TTCC)n Simple_repeat Simple_repeat 1 313 0 5 1304 351 65 0 0 chr6 94291377 94291423 -55225614 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1304 277 243 14 28 chr6 94291426 94291498 -55225539 - ID4 SINE ID -11 72 2 5 1304 712 298 9 14 chr6 94291878 94292099 -55224938 + ID_B1 SINE B4 3 222 -2 5 1304 333 297 104 35 chr6 94292117 94292174 -55224863 + L1M5 LINE L1 5569 5626 -536 5 1304 4396 16 12 0 chr6 94292174 94292661 -55224376 + MT2_Mm LTR ERVL 1 493 0 5 1304 486 229 132 0 chr6 94292661 94292805 -55224232 + L1M5 LINE L1 5622 5784 -389 5 1304 1350 168 164 27 chr6 94292813 94293106 -55223931 - ORR1C2 LTR MaLR -4 380 48 5 1304 609 240 126 0 chr6 94293274 94293301 -55223736 - B3 SINE B2 -10 206 166 5 1304 252 86 0 0 chr6 94293301 94293336 -55223701 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1304 609 240 126 0 chr6 94293336 94293483 -55223554 - B3 SINE B2 -51 165 11 5 1304 1085 97 57 0 chr6 94293496 94293671 -55223366 - B2_Mm2 SINE B2 -5 190 6 5 1304 412 320 19 45 chr6 94294312 94294469 -55222568 + MLT1E3 LTR MaLR 308 460 -164 5 1304 599 286 25 162 chr6 94294724 94294818 -55222219 + B4 SINE B4 4 83 -209 5 1304 939 137 0 14 chr6 94294818 94294959 -55222078 + B1_Mus2 SINE Alu 3 141 -6 5 1304 599 286 25 162 chr6 94294959 94295185 -55221852 + B4 SINE B4 84 280 -12 5 1304 522 111 0 0 chr6 94295915 94295923 -55221114 + (GA)n Simple_repeat Simple_repeat 2 9 0 5 1304 442 246 18 0 chr6 94295923 94296037 -55221000 + PB1D9 SINE Alu 4 119 -1 5 1304 522 111 0 0 chr6 94296037 94296109 -55220928 + (GA)n Simple_repeat Simple_repeat 2 73 0 5 1304 1915 171 50 48 chr6 94296404 94296804 -55220233 + MTD LTR MaLR 6 406 -13 5 1304 343 174 11 11 chr6 94297011 94297098 -55219939 + (TA)n Simple_repeat Simple_repeat 2 88 0 5 1304 347 0 0 23 chr6 94297217 94297261 -55219776 + (TTTTC)n Simple_repeat Simple_repeat 4 46 0 5 1304 2298 150 26 8 chr6 94297788 94298165 -55218872 + ORR1C2 LTR MaLR 1 384 0 5 1304 4687 226 52 34 chr6 94298165 94299121 -55217916 + ORR1C2-int LTR MaLR 1 989 -381 5 1304 567 0 0 0 chr6 94299121 94299184 -55217853 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1304 4687 226 52 34 chr6 94299184 94299442 -55217595 + ORR1C2-int LTR MaLR 990 1236 -134 5 1304 288 0 0 0 chr6 94300020 94300052 -55216985 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1304 673 154 73 7 chr6 94300053 94300190 -55216847 + ORR1C2-int LTR MaLR 1225 1370 0 5 1304 1792 165 87 14 chr6 94300190 94300546 -55216491 + ORR1C2 LTR MaLR 1 382 -2 5 1304 216 0 0 0 chr6 94300634 94300658 -55216379 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1304 468 312 31 12 chr6 94301206 94301368 -55215669 + ID_B1 SINE B4 4 168 -56 5 1304 751 205 412 8 chr6 94301368 94301636 -55215401 + ORR1D1 LTR MaLR 1 376 -8 5 1304 736 163 0 0 chr6 94302128 94302251 -55214786 + B1_Mm SINE Alu 9 131 -16 5 1304 189 0 0 0 chr6 94302255 94302276 -55214761 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1304 198 0 0 0 chr6 94302298 94302320 -55214717 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 5 1304 311 312 36 27 chr6 94302416 94302528 -55214509 - PB1D7 SINE Alu -1 119 7 5 1304 258 105 0 0 chr6 94303037 94303075 -55213962 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 5 1304 445 239 0 0 chr6 94303094 94303186 -55213851 - ID_B1 SINE B4 -12 212 121 5 1304 326 23 0 23 chr6 94303212 94303256 -55213781 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 5 1304 429 95 0 0 chr6 94303295 94303358 -55213679 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1304 406 282 0 46 chr6 94303359 94303489 -55213548 - RSINE1 SINE B4 -31 134 11 5 1304 336 244 67 0 chr6 94303478 94303568 -55213469 - ID_B1 SINE B4 -124 100 5 5 1304 1090 236 53 46 chr6 94304799 94305083 -55211954 + B4 SINE B4 1 286 -6 5 1304 995 117 0 6 chr6 94305087 94305268 -55211769 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1304 215 214 0 0 chr6 94305642 94305684 -55211353 + ID4 SINE ID 1 42 -41 5 1304 778 294 72 36 chr6 94306088 94306392 -55210645 - L1MC LINE L1 -2230 5652 5338 5 1304 356 213 51 13 chr6 94306712 94306799 -55210238 - PB1D9 SINE Alu -17 103 15 5 1304 454 287 93 49 chr6 94306805 94306856 -55210181 - B4A SINE B4 -74 218 158 5 1304 2348 97 22 3 chr6 94306856 94307177 -55209860 + ORR1A2 LTR MaLR 1 327 0 5 1304 454 287 93 49 chr6 94307177 94307330 -55209707 - B4A SINE B4 -135 157 5 5 1304 219 114 0 0 chr6 94307337 94307372 -55209665 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 5 1304 1202 171 9 5 chr6 94309109 94309327 -55207710 + URR1B DNA MER1_type 7 225 0 5 1304 410 298 58 0 chr6 94309354 94309475 -55207562 + B4 SINE B4 1 128 -164 5 1304 440 77 0 15 chr6 94309536 94309602 -55207435 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 5 1304 459 194 0 0 chr6 94309694 94309787 -55207250 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 5 1304 2271 100 78 20 chr6 94309990 94310337 -55206700 + ORR1B2 LTR MaLR 1 367 0 5 1304 882 236 94 23 chr6 94311032 94311288 -55205749 - B4 SINE B4 -18 274 1 5 1304 180 111 0 0 chr6 94311725 94311752 -55205285 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 1304 266 279 31 39 chr6 94311754 94311881 -55205156 - L1ME3 LINE L1 0 6162 6037 5 1304 730 267 26 10 chr6 94311997 94312190 -55204847 - B4A SINE B4 -6 286 91 5 1304 935 227 0 0 chr6 94312206 94312391 -55204646 + B4A SINE B4 108 292 0 5 1304 368 218 38 38 chr6 94312467 94312572 -55204465 - L1MC4 LINE L1 -493 7549 7445 5 1304 688 252 52 88 chr6 94312705 94313096 -55203941 - L1MC4 LINE L1 -1123 6919 6531 5 1304 1478 68 5 10 chr6 94313096 94313290 -55203747 - B2_Mm1a SINE B2 0 193 1 5 1304 643 282 39 96 chr6 94313290 94313365 -55203672 - L1MC4 LINE L1 -1352 6530 6459 5 1304 217 306 0 16 chr6 94313386 94313449 -55203588 + ID SINE ID 23 84 -140 5 1304 189 0 0 0 chr6 94313795 94313816 -55203221 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1304 1238 217 51 82 chr6 94313828 94314184 -55202853 - ORR1D2 LTR MaLR -4 366 22 5 1304 733 182 0 29 chr6 94314196 94314332 -55202705 - B1_Mur1 SINE Alu -11 138 7 5 1304 725 218 132 53 chr6 94314347 94314416 -55202621 - B4 SINE B4 -4 288 227 5 1304 2773 129 35 0 chr6 94314416 94314842 -55202195 - BGLII_B LTR ERVK 0 441 1 5 1304 725 218 132 53 chr6 94314842 94315000 -55202037 - B4 SINE B4 -66 226 44 5 1304 1040 214 133 11 chr6 94315009 94315287 -55201750 - ORR1D2 LTR MaLR -3 367 56 5 1304 617 373 21 17 chr6 94315298 94315538 -55201499 + RMER15-int LTR ERVL 302 542 -4457 5 1304 4342 108 8 5 chr6 94315723 94316335 -55200702 - L1_Mur1 LINE L1 -13 5873 5260 5 1304 2535 50 58 0 chr6 94316335 94316694 -55200343 - MTB LTR MaLR -20 380 1 5 1304 2371 118 32 8 chr6 94316694 94316970 -55200067 - L1_Mur1 LINE L1 -739 5147 4873 5 1304 222 37 0 0 chr6 94316970 94316997 -55200040 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 5 1304 2371 118 32 8 chr6 94316997 94317095 -55199942 - L1_Mur1 LINE L1 -1014 4872 4766 5 1304 5397 154 41 60 chr6 94317085 94317687 -55199350 + Lx3C LINE L1 5896 6482 -494 5 1304 1216 41 7 0 chr6 94317687 94317832 -55199205 - B1_Mus1 SINE Alu 0 148 3 5 1304 5397 154 41 60 chr6 94317832 94318318 -55198719 + Lx3C LINE L1 6483 6964 -12 5 1304 289 351 95 81 chr6 94318370 94318633 -55198404 + RMER15-int LTR ERVL 1275 1549 -3450 5 1304 933 168 201 0 chr6 94318633 94318812 -55198225 - B3 SINE B2 0 216 2 5 1304 289 351 95 81 chr6 94318812 94318895 -55198142 + RMER15-int LTR ERVL 1550 1626 -3373 5 1304 432 0 0 0 chr6 94319094 94319142 -55197895 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1304 329 287 29 10 chr6 94319396 94319498 -55197539 + RMER15-int LTR ERVL 1880 1983 -3016 5 1304 957 320 48 9 chr6 94319511 94319842 -55197195 + RMER15-int LTR ERVL 2091 2434 -2565 5 1304 1213 309 36 50 chr6 94319898 94320478 -55196559 + RMER15-int LTR ERVL 4188 4759 -240 5 1304 240 269 0 0 chr6 94320747 94320799 -55196238 + RMER15 LTR ERVL 1 52 -523 5 1304 2218 215 62 19 chr6 94320852 94321383 -55195654 + RMER15 LTR ERVL 22 575 0 5 1304 654 331 85 21 chr6 94321383 94321524 -55195513 - L1MC4a LINE L1 -1934 5948 5801 5 1304 336 48 0 0 chr6 94321524 94321566 -55195471 + (CAT)n Simple_repeat Simple_repeat 1 42 0 5 1304 654 331 85 21 chr6 94321566 94321905 -55195132 - L1MC4a LINE L1 -2082 5800 5437 5 1304 488 266 37 53 chr6 94321910 94322097 -55194940 - B3A SINE B2 -7 191 1 5 1304 262 270 0 31 chr6 94322280 94322345 -55194692 - PB1D10 SINE Alu -19 98 36 5 1304 243 0 0 0 chr6 94322373 94322400 -55194637 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1304 243 0 0 0 chr6 94322493 94322520 -55194517 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1304 634 211 45 0 chr6 94322733 94322866 -55194171 - B3A SINE B2 -56 142 4 5 1304 375 284 39 39 chr6 94323037 94323165 -55193872 - MER5A DNA MER1_type -34 155 28 5 1304 356 304 17 35 chr6 94323220 94323336 -55193701 - PB1D10 SINE Alu -1 116 3 5 1304 548 268 67 82 chr6 94323373 94323568 -55193469 + B3A SINE B2 7 198 0 5 1304 391 269 6 80 chr6 94323648 94323831 -55193206 + B3A SINE B2 36 203 -13 5 1304 370 256 0 0 chr6 94324032 94324110 -55192927 - B3A SINE B2 -23 175 98 5 1304 542 289 65 33 chr6 94324174 94324187 -55192850 + LTR83 LTR ERVL 223 233 -547 5 1304 936 72 0 0 chr6 94324187 94324312 -55192725 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 5 1304 542 289 65 33 chr6 94324312 94324513 -55192524 + LTR83 LTR ERVL 234 444 -336 5 1304 426 268 103 6 chr6 94325148 94325313 -55191724 - LTR16D1 LTR ERVL -269 406 226 5 1304 242 237 263 0 chr6 94325424 94325538 -55191499 + LTR83 LTR ERVL 627 770 -10 5 1304 668 214 18 0 chr6 94325913 94326072 -55190965 + B3 SINE B2 1 171 -27 5 1304 6154 76 27 8 chr6 94327057 94327937 -55189100 + L1Md_F2 LINE L1 5723 6582 0 5 1304 2049 172 98 10 chr6 94328384 94328771 -55188266 - MTC LTR MaLR 0 421 1 5 1304 2125 160 85 32 chr6 94329049 94329449 -55187588 - MTC LTR MaLR 0 421 1 5 1304 1432 268 75 51 chr6 94329515 94329983 -55187054 + Lx6 LINE L1 6956 7434 -26 5 1304 438 167 0 0 chr6 94330279 94330351 -55186686 + B4A SINE B4 130 201 -91 6 1304 579 228 22 7 chr6 94331218 94331355 -55185682 - B1F SINE Alu -8 141 3 6 1304 3066 28 0 0 chr6 94331938 94332291 -55184746 + L1Md_A LINE L1 6230 6582 0 6 1304 402 94 0 0 chr6 94332607 94332671 -55184366 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1304 243 0 0 0 chr6 94332779 94332806 -55184231 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1304 806 214 7 0 chr6 94332806 94332951 -55184086 - B1_Mur1 SINE Alu -3 146 1 6 1304 335 354 28 28 chr6 94332963 94333178 -55183859 - B4A SINE B4 -76 216 2 6 1304 1920 186 21 16 chr6 94333225 94333597 -55183440 + ORR1D1 LTR MaLR 1 374 0 6 1304 254 264 62 26 chr6 94333737 94333850 -55183187 - PB1D7 SINE Alu -3 117 1 6 1304 222 118 0 0 chr6 94334048 94334082 -55182955 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1304 2052 141 70 14 chr6 94334082 94334427 -55182610 - ORR1B2 LTR MaLR -3 364 1 6 1304 230 259 0 11 chr6 94334466 94334556 -55182481 + (TA)n Simple_repeat Simple_repeat 2 90 0 6 1304 2210 158 48 2 chr6 94334693 94335087 -55181950 + MTC LTR MaLR 2 413 -8 6 1304 495 254 57 0 chr6 94335631 94335753 -55181284 - B1F SINE Alu -18 131 3 6 1304 255 323 23 51 chr6 94335855 94336031 -55181006 - L1ME3A LINE L1 -84 6089 5919 6 1304 3056 61 2 20 chr6 94336796 94337199 -55179838 + MTA_Mm LTR MaLR 1 396 0 6 1304 612 330 43 46 chr6 94337372 94337674 -55179363 + Kanga1c DNA Tc2 428 728 -1 6 1304 275 0 29 0 chr6 94337998 94338033 -55179004 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1304 1047 236 21 61 chr6 94338055 94338335 -55178702 - B4A SINE B4 -22 270 2 6 1304 403 307 46 41 chr6 94338358 94338555 -55178482 + L2 LINE L2 2676 2873 -546 6 1304 540 347 108 57 chr6 94338663 94339051 -55177986 - LTR16C LTR ERVL 0 489 82 6 1304 663 282 65 101 chr6 94339585 94339861 -55177176 - B4 SINE B4 -22 270 5 6 1304 199 286 0 20 chr6 94339861 94339911 -55177126 - L2b LINE L2 -22 3353 3305 6 1304 297 183 0 0 chr6 94340779 94340839 -55176198 + CT-rich Low_complexity Low_complexity 3 62 0 6 1304 342 45 0 0 chr6 94340932 94340976 -55176061 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1304 412 316 73 0 chr6 94341189 94341325 -55175712 - RSINE1 SINE B4 -17 148 3 6 1304 556 154 8 17 chr6 94341833 94341952 -55175085 + CT-rich Low_complexity Low_complexity 4 121 0 6 1304 350 269 27 18 chr6 94342206 94342316 -55174721 + PB1D7 SINE Alu 1 111 -9 6 1304 277 227 12 128 chr6 94342330 94342416 -55174621 + ID2 SINE ID 2 77 -6 6 1304 928 230 48 10 chr6 94342686 94342892 -55174145 - B3 SINE B2 0 216 3 6 1304 423 278 10 0 chr6 94342898 94342995 -55174042 - PB1D10 SINE Alu 0 117 20 6 1304 5555 58 14 10 chr6 94343758 94344459 -55172578 + L1Md_F2 LINE L1 5879 6582 0 6 1304 203 189 0 0 chr6 94344628 94344665 -55172372 + GA-rich Low_complexity Low_complexity 1 37 0 6 1304 21 36 0 0 chr6 94344835 94344863 -55172174 + AT_rich Low_complexity Low_complexity 1 28 0 6 1304 695 213 54 78 chr6 94345272 94345476 -55171561 - ID_B1 SINE B4 -23 201 3 6 1304 566 154 8 23 chr6 94345855 94345988 -55171049 + (TA)n Simple_repeat Simple_repeat 1 131 0 6 1304 323 288 0 0 chr6 94346636 94346716 -55170321 + ID4 SINE ID 2 81 -2 6 1304 756 259 15 25 chr6 94346763 94346961 -55170076 + ID_B1 SINE B4 1 196 -28 6 1304 428 250 9 0 chr6 94347105 94347217 -55169820 - PB1D9 SINE Alu -6 114 2 6 1304 3444 25 5 0 chr6 94347366 94347760 -55169277 - MTA_Mm LTR MaLR 0 396 1 6 1304 515 160 53 0 chr6 94347809 94347903 -55169134 + B3A SINE B2 2 100 -98 6 1304 189 229 0 0 chr6 94347973 94348021 -55169016 + GA-rich Low_complexity Low_complexity 3 50 0 6 1304 380 77 0 0 chr6 94348048 94348100 -55168937 + MTEb LTR MaLR 59 110 -269 6 1304 308 262 11 121 chr6 94348093 94348184 -55168853 + RSINE1 SINE B4 85 165 0 6 1304 879 203 41 123 chr6 94348197 94348489 -55168548 + MTEb LTR MaLR 110 377 -2 6 1304 676 184 8 16 chr6 94348529 94348656 -55168381 + RSINE1 SINE B4 4 129 -36 6 1304 248 53 0 26 chr6 94348661 94348700 -55168337 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 6 1304 317 272 194 22 chr6 94348746 94348885 -55168152 + B4A SINE B4 128 290 -2 6 1304 272 274 0 35 chr6 94348893 94348980 -55168057 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 1304 522 277 74 128 chr6 94349011 94349169 -55167868 + MLT1A1 LTR MaLR 127 263 -145 6 1304 6149 44 4 1 chr6 94349169 94349905 -55167132 + L1Md_F2 LINE L1 5833 6570 -12 6 1304 522 277 74 128 chr6 94349905 94350044 -55166993 + MLT1A1 LTR MaLR 264 408 0 6 1304 281 302 37 48 chr6 94352219 94352240 -55164797 - CYRA11_Mm Unknown Y-chromosome -268 349 221 6 1304 874 145 6 6 chr6 94352240 94352400 -55164637 + URR1B DNA MER1_type 66 225 0 6 1304 1001 123 6 0 chr6 94352828 94352998 -55164039 + (GAA)n Simple_repeat Simple_repeat 3 173 0 6 1304 411 244 192 23 chr6 94353118 94353248 -55163789 - RSINE1 SINE B4 -10 155 4 6 1304 303 282 26 0 chr6 94353458 94353536 -55163501 - L1MB7 LINE L1 -31 6143 6064 6 1304 264 267 37 45 chr6 94353600 94353726 -55163311 - PB1D10 SINE Alu -21 127 1 6 1304 407 246 164 0 chr6 94353748 94353870 -55163167 - L1MB7 LINE L1 -223 5961 5820 6 1304 2024 144 18 3 chr6 94353887 94354222 -55162815 - ORR1B1 LTR MaLR -8 386 47 6 1304 3300 50 5 2 chr6 94354369 94354767 -55162270 + MTB LTR MaLR 1 399 -1 6 1304 231 296 74 0 chr6 94354793 94354874 -55162163 - MTEa LTR MaLR -45 334 248 6 1304 1326 72 5 89 chr6 94355096 94355309 -55161728 - B2_Mm2 SINE B2 0 195 1 6 1304 1018 204 90 251 chr6 94356322 94356912 -55160125 - SSU-rRNA_Hsa rRNA rRNA -888 981 487 6 1304 375 221 51 13 chr6 94357108 94357186 -55159851 + B4A SINE B4 1 81 -211 6 1304 213 39 0 0 chr6 94357189 94357215 -55159822 + (GGA)n Simple_repeat Simple_repeat 3 28 0 6 1304 378 143 0 0 chr6 94357234 94357297 -55159740 + (CAG)n Simple_repeat Simple_repeat 2 64 0 6 1304 761 231 48 34 chr6 94357297 94357503 -55159534 + B4A SINE B4 83 291 -1 6 1304 539 208 213 16 chr6 94357591 94357713 -55159324 - B1_Mur2 SINE Alu -2 147 2 6 1304 459 0 0 0 chr6 94358617 94358668 -55158369 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1304 337 337 11 0 chr6 94360085 94360174 -55156863 - PB1D10 SINE Alu -27 90 1 6 1304 333 0 0 0 chr6 94360234 94360271 -55156766 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1304 231 36 0 0 chr6 94360271 94360298 -55156739 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1304 333 47 0 0 chr6 94361491 94361534 -55155503 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1304 486 0 0 0 chr6 94361543 94361597 -55155440 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1304 422 320 98 0 chr6 94361708 94361861 -55155176 - Charlie12 DNA MER1_type -2698 175 8 6 1304 752 165 68 0 chr6 94362060 94362193 -55154844 + B1_Mus2 SINE Alu 5 146 -1 6 1304 847 238 14 33 chr6 94362823 94363036 -55154001 + B4 SINE B4 43 251 -41 6 1304 557 160 9 0 chr6 94363910 94364016 -55153021 + GA-rich Low_complexity Low_complexity 1 107 0 6 1304 3455 33 2 0 chr6 94364464 94364859 -55152178 + MTA_Mm LTR MaLR 1 396 0 6 1304 1185 45 6 0 chr6 94364868 94365025 -55152012 + B2_Mm1a SINE B2 1 158 -35 6 1304 252 0 0 0 chr6 94365025 94365053 -55151984 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 6 1304 465 200 90 0 chr6 94365113 94365213 -55151824 - PB1D9 SINE Alu -7 113 5 6 1304 223 333 0 13 chr6 94365655 94365731 -55151306 + CT-rich Low_complexity Low_complexity 3 77 0 6 1304 348 148 0 0 chr6 94365832 94365893 -55151144 + (CACCAT)n Simple_repeat Simple_repeat 5 65 0 6 1304 737 188 38 49 chr6 94366273 94366458 -55150579 - B2_Mm2 SINE B2 -11 184 2 6 1304 962 226 65 17 chr6 94366486 94366716 -55150321 + ORR1D1 LTR MaLR 1 241 -133 6 1304 2458 158 76 11 chr6 94366716 94367178 -55149859 + Lx LINE L1 6162 6653 -1 6 1304 1875 172 166 0 chr6 94367270 94367631 -55149406 - MTC LTR MaLR 0 421 1 6 1304 448 181 196 0 chr6 94367631 94367764 -55149273 - MTC-int LTR MaLR 0 1258 1100 6 1304 4150 181 121 23 chr6 94369505 94370502 -55146535 - MTC-int LTR MaLR -144 1114 20 6 1304 1944 163 99 23 chr6 94370502 94370992 -55146045 - RMER4B LTR ERVK -8 577 17 6 1304 1784 145 151 0 chr6 94371018 94371259 -55145778 - MTC LTR MaLR -20 401 136 6 1304 297 0 0 0 chr6 94371259 94371292 -55145745 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 6 1304 1784 144 152 0 chr6 94371292 94371410 -55145627 - MTC LTR MaLR -286 135 3 6 1304 1345 256 48 8 chr6 94371589 94371711 -55145326 + ORR1D2 LTR MaLR 1 123 -247 6 1304 204 40 0 0 chr6 94371711 94371736 -55145301 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 20 1345 256 48 8 chr6 94371736 94371967 -55145070 + ORR1D2 LTR MaLR 124 367 -3 6 1305 881 311 66 62 chr6 94372100 94373125 -55143912 + L1M2 LINE L1 1652 2698 -3851 6 1305 1054 110 6 34 chr6 94373143 94373321 -55143716 + B2_Mm2 SINE B2 1 173 -22 6 1305 1941 308 78 23 chr6 94373321 94374403 -55142634 + L1_Mur3 LINE L1 2078 3218 -2662 6 1305 813 286 13 22 chr6 94374407 94374636 -55142401 + ORR1E LTR MaLR 4 230 -129 6 1305 720 214 109 63 chr6 94374637 94374876 -55142161 + MTD LTR MaLR 170 419 0 6 1305 1859 303 99 37 chr6 94374876 94375036 -55142001 + L1_Mur3 LINE L1 3751 3892 -1988 6 1305 852 179 7 20 chr6 94375036 94375184 -55141853 + B1_Mur3 SINE Alu 4 149 0 6 1305 1859 303 99 37 chr6 94375184 94376103 -55140934 + L1_Mur3 LINE L1 3893 4897 -983 6 1305 416 91 0 15 chr6 94376122 94376189 -55140848 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1305 260 267 93 19 chr6 94376190 94376297 -55140740 + L1_Mur3 LINE L1 4951 5065 -815 6 1305 1749 142 32 85 chr6 94376341 94376717 -55140320 + ORR1B1 LTR MaLR 39 394 0 6 1305 916 254 136 42 chr6 94376669 94377051 -55139986 - MTD LTR MaLR 0 419 2 6 1305 409 258 105 7 chr6 94377051 94377163 -55139874 + L1M2 LINE L1 5054 5239 -904 6 1305 201 39 0 0 chr6 94377163 94377189 -55139848 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1305 409 263 110 8 chr6 94377189 94377317 -55139720 + L1M2 LINE L1 5176 5337 -806 6 1305 245 265 141 66 chr6 94377315 94377513 -55139524 + L1_Mur3 LINE L1 3376 3588 -2292 7 1305 1845 138 20 65 chr6 94377578 94377919 -55139118 + ORR1A3 LTR MaLR 1 326 0 7 1305 1303 127 28 9 chr6 94378054 94378269 -55138768 - RLTR23 LTR ERV1 0 430 212 7 1305 411 202 110 30 chr6 94378431 94378576 -55138461 + L1M2 LINE L1 4092 4240 -1906 7 1305 8578 156 76 25 chr6 94379270 94381324 -55135713 + L1_Mur2 LINE L1 897 2997 -2880 7 1305 465 263 12 82 chr6 94381337 94381379 -55135658 + Lx5 LINE L1 6089 6126 -924 7 1305 195 42 0 0 chr6 94381379 94381403 -55135634 + (GGA)n Simple_repeat Simple_repeat 2 25 0 7 1305 465 263 12 82 chr6 94381403 94381530 -55135507 + Lx5 LINE L1 6127 6246 -804 7 1305 216 238 0 0 chr6 94381531 94381594 -55135443 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 7 1305 3801 206 24 60 chr6 94381594 94382424 -55134613 + Lx5 LINE L1 6248 7047 -3 7 1305 246 206 15 73 chr6 94382598 94382666 -55134371 - RMER10A LTR ERVL -361 81 18 7 1305 276 244 13 0 chr6 94382668 94382746 -55134291 + L1M2 LINE L1 4232 4310 -1833 7 1305 2320 199 107 9 chr6 94382752 94383276 -55133761 + RMER1C Other Other 768 1342 0 7 1305 232 247 0 86 chr6 94383301 94383394 -55133643 + L1M2 LINE L1 4313 4397 -1746 7 1305 256 210 112 35 chr6 94383392 94383535 -55133502 + Lx9 LINE L1 7476 7629 -15 7 1305 703 252 102 4 chr6 94383550 94383785 -55133252 + L1M2 LINE L1 4395 4652 -1491 7 1305 393 271 8 48 chr6 94383790 94383914 -55133123 + MTEa LTR MaLR 6 124 -255 7 1305 1284 82 54 16 chr6 94384145 94384330 -55132707 + B2_Mm2 SINE B2 1 192 -3 7 1305 318 50 0 0 chr6 94385184 94385224 -55131813 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1305 1086 291 7 28 chr6 94385252 94385542 -55131495 - B4 SINE B4 -6 286 3 7 1305 1179 124 59 5 chr6 94385705 94385908 -55131129 - B3 SINE B2 0 216 3 7 1305 186 167 0 0 chr6 94386586 94386622 -55130415 + (TATG)n Simple_repeat Simple_repeat 4 39 0 7 1305 307 272 102 16 chr6 94386715 94386842 -55130195 - MLT1A0 LTR MaLR 0 374 237 7 1305 640 232 133 6 chr6 94387102 94387275 -55129762 - B3A SINE B2 -2 196 2 7 1305 243 0 0 0 chr6 94387311 94387338 -55129699 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 7 1305 452 230 10 59 chr6 94387338 94387468 -55129569 - B1F SINE Alu -7 142 20 7 1305 304 89 89 0 chr6 94387533 94387578 -55129459 - L1Md_F2 LINE L1 -320 5563 5515 7 1305 6966 57 47 5 chr6 94387578 94388466 -55128571 + L1Md_F2 LINE L1 5645 6570 -12 7 1305 196 308 40 40 chr6 94388743 94388868 -55128169 - MIRb SINE MIR -122 146 22 7 1305 27 0 0 0 chr6 94389217 94389244 -55127793 + AT_rich Low_complexity Low_complexity 1 27 0 7 1305 856 179 0 0 chr6 94389244 94389384 -55127653 - B1_Mus2 SINE Alu -7 140 1 7 1305 390 304 72 14 chr6 94389807 94390014 -55127023 + MER20 DNA MER1_type 1 219 0 7 1305 268 284 174 7 chr6 94390549 94390698 -55126339 - MER58C DNA MER1_type 0 215 42 7 1305 398 348 58 5 chr6 94390942 94391117 -55125920 + MLT1F1 LTR MaLR 337 521 -48 7 1305 1225 169 61 59 chr6 94391117 94391484 -55125553 + RLTR20C LTR ERVK 1 439 -102 7 1305 378 0 0 0 chr6 94391484 94391526 -55125511 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1305 420 206 108 0 chr6 94391526 94391565 -55125472 + RLTR20C LTR ERVK 440 487 -54 7 1305 1726 216 132 72 chr6 94391944 94392529 -55124508 - RMER20B LTR ERVK 0 627 8 7 1305 816 271 135 18 chr6 94393523 94393680 -55123357 + MTE2b LTR MaLR 3 167 -212 7 1305 333 0 0 0 chr6 94393680 94393717 -55123320 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 1305 816 271 135 18 chr6 94393717 94393893 -55123144 + MTE2b LTR MaLR 168 375 -4 7 1305 736 245 72 72 chr6 94393968 94394258 -55122779 + B4A SINE B4 3 292 0 7 1305 231 275 164 16 chr6 94394424 94394546 -55122491 + MLT1K LTR MaLR 456 595 0 7 1305 599 242 5 8 chr6 94395457 94395602 -55121435 - ID_B1 SINE B4 -71 221 81 7 1305 204 67 0 0 chr6 94395893 94395923 -55121114 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1305 384 86 17 4 chr6 94395978 94396056 -55120981 - ORR1A3 LTR MaLR 0 378 272 7 1305 491 45 15 0 chr6 94396139 94396205 -55120832 + (TC)n Simple_repeat Simple_repeat 2 68 0 7 1305 284 290 30 70 chr6 94396266 94396366 -55120671 + B4 SINE B4 187 282 -10 7 1305 798 278 116 75 chr6 94396994 94397433 -55119604 - MLT1C LTR MaLR -10 457 1 7 1305 909 126 0 0 chr6 94397719 94397862 -55119175 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 7 1305 333 0 0 0 chr6 94397864 94397901 -55119136 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 7 1305 1124 58 0 0 chr6 94397901 94398039 -55118998 - B1_Mus1 SINE Alu -10 138 1 7 1305 359 263 117 0 chr6 94398105 94398229 -55118808 + MTEa LTR MaLR 240 376 -3 7 1305 296 225 18 127 chr6 94399367 94399409 -55117628 + MT2B LTR ERVL 133 250 -329 7 1305 533 216 0 0 chr6 94399409 94399506 -55117531 + B1F2 SINE Alu 1 97 -52 7 1305 642 109 0 0 chr6 94399527 94399628 -55117409 + (GA)n Simple_repeat Simple_repeat 2 102 0 7 1305 1060 278 52 33 chr6 94399693 94400058 -55116979 - MLT2B4 LTR ERVL -182 374 3 7 1305 642 253 230 19 chr6 94400245 94400563 -55116474 - Lx8 LINE L1 0 7473 7088 7 1305 1410 281 104 53 chr6 94400748 94401215 -55115822 - Lx8 LINE L1 -71 7402 6921 7 1305 2668 55 9 3 chr6 94401215 94401545 -55115492 + IAPEY3_LTR LTR ERVK 1 332 0 7 1305 1410 281 104 53 chr6 94401545 94401694 -55115343 - Lx8 LINE L1 -553 6920 6755 7 1305 280 226 0 0 chr6 94401790 94401852 -55115185 + B4 SINE B4 1 62 -230 7 1305 236 280 12 47 chr6 94401946 94402032 -55115005 + RSINE1 SINE B4 83 165 0 7 1305 250 273 102 0 chr6 94402231 94402319 -55114718 - RMER13A LTR ERVK -212 696 600 7 1305 886 256 125 46 chr6 94402312 94402369 -55114668 - RMER13A LTR ERVK -394 466 386 7 1305 201 39 0 0 chr6 94402369 94402395 -55114642 + (CCCCCA)n Simple_repeat Simple_repeat 1 26 0 7 1305 886 256 125 46 chr6 94402395 94402768 -55114269 - RMER13A LTR ERVK -475 385 2 7 1305 197 308 151 19 chr6 94407201 94407307 -55109730 + MIRb SINE MIR 35 154 -114 7 1305 389 386 18 4 chr6 94407415 94407644 -55109393 - MIRc SINE MIR -13 255 24 7 1305 732 258 36 5 chr6 94408398 94408593 -55108444 - B4 SINE B4 -6 286 86 7 1305 1095 249 54 20 chr6 94409994 94410289 -55106748 - ORR1E LTR MaLR -54 305 1 7 1305 198 0 0 0 chr6 94410760 94410782 -55106255 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1305 351 0 0 0 chr6 94410782 94410820 -55106217 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 1305 727 191 7 14 chr6 94411296 94411434 -55105603 + B1_Mur2 SINE Alu 2 138 -11 7 1305 300 119 0 0 chr6 94411439 94411498 -55105539 + (CAA)n Simple_repeat Simple_repeat 1 59 0 7 1305 390 275 1 34 chr6 94411739 94411862 -55105175 + MLT1A LTR MaLR 257 451 -16 7 1305 198 0 0 0 chr6 94412465 94412487 -55104550 + (TTTTC)n Simple_repeat Simple_repeat 5 26 0 7 1305 662 204 41 27 chr6 94412488 94412634 -55104403 - B1_Mur2 SINE Alu 0 149 2 7 1305 1022 306 32 14 chr6 94412974 94413319 -55103718 - MTE2b LTR MaLR -28 351 1 7 1305 320 0 25 0 chr6 94413373 94413413 -55103624 + (CAA)n Simple_repeat Simple_repeat 2 42 0 7 1305 389 241 153 24 chr6 94415089 94415224 -55101813 + ID_B1 SINE B4 82 230 -62 7 1305 609 196 72 0 chr6 94415316 94415454 -55101583 + B1_Mus1 SINE Alu 1 148 0 7 1305 606 239 112 35 chr6 94415576 94415745 -55101292 + B3A SINE B2 1 182 -16 7 1305 31 0 0 0 chr6 94415763 94415794 -55101243 + AT_rich Low_complexity Low_complexity 1 31 0 7 1305 339 353 44 4 chr6 94415911 94416136 -55100901 - MER90a LTR ERV1 -20 594 361 7 1305 650 188 200 0 chr6 94416620 94416785 -55100252 - B3 SINE B2 0 216 19 7 1305 646 145 16 0 chr6 94416816 94416940 -55100097 + GA-rich Low_complexity Low_complexity 2 127 0 7 1305 216 97 0 0 chr6 94417430 94417461 -55099576 + (TTG)n Simple_repeat Simple_repeat 1 31 0 7 1305 215 162 0 42 chr6 94417863 94417934 -55099103 + T-rich Low_complexity Low_complexity 1 68 0 7 1305 953 40 0 23 chr6 94417935 94418064 -55098973 - B1_Mus1 SINE Alu 0 148 23 7 1305 3667 69 4 61 chr6 94418065 94418317 -55098720 - L1_Mus3 LINE L1 -25 6613 6388 7 1305 1184 75 0 0 chr6 94418317 94418463 -55098574 - B1_Mus2 SINE Alu 0 147 2 7 1305 3667 69 4 61 chr6 94418463 94418734 -55098303 - L1_Mus3 LINE L1 -251 6387 6120 7 1305 1427 240 48 6 chr6 94419409 94419740 -55097297 + ORR1D2 LTR MaLR 1 345 -25 7 1305 1324 191 99 26 chr6 94419752 94420096 -55096941 - RMER13A LTR ERVK -6 854 486 7 1305 259 287 69 23 chr6 94420311 94420497 -55096540 + LTRIS4 LTR ERV1 229 457 -50 7 1305 2867 133 22 16 chr6 94420471 94420971 -55096066 - RMER13A LTR ERVK -342 566 30 7 1305 239 196 0 0 chr6 94421087 94421133 -55095904 + ORR1D2 LTR MaLR 325 370 0 7 1305 5076 83 1 3 chr6 94422481 94423148 -55093889 - L1_Mus1 LINE L1 -188 5695 5030 7 1305 7146 43 15 1 chr6 94423148 94424000 -55093037 + L1_Mus1 LINE L1 5704 6567 0 7 1305 745 269 33 14 chr6 94424538 94424749 -55092288 - B3 SINE B2 0 216 2 7 1305 975 135 119 50 chr6 94425512 94425714 -55091323 - URR1A DNA MER1_type -10 216 1 7 1305 430 264 40 24 chr6 94426150 94426274 -55090763 + B1F SINE Alu 1 126 -23 7 1305 221 57 0 28 chr6 94426295 94426331 -55090706 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 7 1305 906 151 13 33 chr6 94426331 94426482 -55090555 - B1_Mur3 SINE Alu 0 149 2 7 1305 401 341 16 0 chr6 94426512 94426638 -55090399 + ID_B1 SINE B4 80 207 -17 7 1305 225 139 0 0 chr6 94426798 94426841 -55090196 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1305 1688 117 92 20 chr6 94428221 94428483 -55088554 + ORR1A2 LTR MaLR 1 290 -37 7 1305 3223 46 8 13 chr6 94428483 94428881 -55088156 + MTA_Mm LTR MaLR 1 396 0 7 1305 1688 117 92 20 chr6 94428881 94428923 -55088114 + ORR1A2 LTR MaLR 291 327 0 7 1305 814 294 29 95 chr6 94429587 94429838 -55087199 + MTD LTR MaLR 6 244 -175 7 1305 360 0 0 0 chr6 94429838 94429878 -55087159 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1305 814 294 29 95 chr6 94429878 94429995 -55087042 + MTD LTR MaLR 245 347 -72 7 1305 357 43 0 0 chr6 94429995 94430042 -55086995 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1305 814 294 29 95 chr6 94430042 94430115 -55086922 + MTD LTR MaLR 348 418 -1 7 1305 539 254 22 82 chr6 94430115 94430297 -55086740 + ID_B1 SINE B4 48 218 -6 7 1305 394 253 11 0 chr6 94430987 94431074 -55085963 - ID_B1 SINE B4 -5 219 132 8 1305 211 205 0 25 chr6 94431111 94431151 -55085886 - ID SINE ID -171 53 15 8 1305 1086 282 70 29 chr6 94431152 94431634 -55085403 - RMER5 LTR ERV1 0 534 33 8 1305 27 0 0 0 chr6 94431778 94431805 -55085232 + AT_rich Low_complexity Low_complexity 1 27 0 8 1305 317 262 0 24 chr6 94431819 94431901 -55085136 + ID4 SINE ID 1 80 -3 8 1305 5820 39 0 4 chr6 94431962 94432656 -55084381 - L1Md_F2 LINE L1 0 6582 5892 8 1305 395 258 155 21 chr6 94432705 94432899 -55084138 - L1MB3 LINE L1 -180 6003 5784 8 1305 1083 236 137 14 chr6 94432952 94433117 -55083920 - MTD LTR MaLR 0 419 236 8 1305 1373 207 202 61 chr6 94433117 94433611 -55083426 - RMER2 LTR ERV1 -1 566 3 8 1305 1083 236 137 14 chr6 94433611 94433802 -55083235 - MTD LTR MaLR -184 235 19 8 1305 1139 107 11 0 chr6 94433834 94434011 -55083026 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 8 1305 549 262 47 47 chr6 94434640 94434852 -55082185 - L1MC1 LINE L1 -154 6179 5968 8 1305 1054 94 126 0 chr6 94434959 94435118 -55081919 - B2_Mm1t SINE B2 -14 179 1 8 1305 289 252 138 85 chr6 94435284 94435414 -55081623 + ID_B1 SINE B4 61 197 -27 8 1305 221 277 36 82 chr6 94435322 94435432 -55081605 + PB1 SINE Alu 12 116 -11 8 1305 232 189 31 39 chr6 94435434 94435561 -55081476 + CT-rich Low_complexity Low_complexity 2 127 0 8 1305 340 265 32 2 chr6 94435692 94435810 -55081227 + B3 SINE B2 63 183 -15 8 1305 401 0 20 0 chr6 94435810 94435859 -55081178 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1305 412 266 35 71 chr6 94435890 94436060 -55080977 + RSINE1 SINE B4 2 165 0 8 1305 438 20 0 0 chr6 94436374 94436425 -55080612 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1305 316 317 32 8 chr6 94436443 94436567 -55080470 - RSINE1 SINE B4 -36 129 3 8 1305 266 265 73 0 chr6 94436601 94436669 -55080368 - ID_B1 SINE B4 -7 217 145 8 1305 2504 231 112 14 chr6 94436694 94437331 -55079706 - Lx8 LINE L1 -3 7470 6772 8 1305 364 298 0 0 chr6 94437332 94437416 -55079621 - ID_B1 SINE B4 -60 164 81 8 1305 264 265 44 0 chr6 94437998 94438066 -55078971 + MLT1F2 LTR MaLR 172 242 -318 8 1305 935 256 31 81 chr6 94438364 94438860 -55078177 + MT2B LTR ERVL 10 541 -60 8 1305 301 215 21 0 chr6 94438860 94438953 -55078084 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 8 1305 2467 168 17 15 chr6 94439107 94439571 -55077466 + RLTR19 LTR ERVK 1 465 -34 8 1305 8092 49 15 0 chr6 94440222 94441317 -55075720 - L1_Mus1 LINE L1 0 6567 5524 8 1305 435 293 21 21 chr6 94442237 94442380 -55074657 + MMERVK10C-int LTR ERVK 3067 3209 -4372 8 1305 347 247 73 73 chr6 94442706 94442870 -55074167 + ETnERV2-int LTR ERVK 5404 5518 -1888 8 1305 251 272 55 55 chr6 94442879 94442988 -55074049 + ETnERV2-int LTR ERVK 4893 5001 -1480 8 1305 207 256 0 0 chr6 94446012 94446055 -55070982 + (CATG)n Simple_repeat Simple_repeat 3 45 0 8 1305 789 238 68 27 chr6 94446311 94446574 -55070463 - B4A SINE B4 -18 274 1 8 1305 236 235 105 21 chr6 94446577 94446727 -55070310 - L1M4 LINE L1 -351 5823 5663 8 1305 345 294 7 100 chr6 94446867 94446897 -55070140 - ID_B1 SINE B4 0 224 99 8 1305 491 275 9 0 chr6 94446897 94447006 -55070031 - B1F1 SINE Alu -22 127 18 8 1305 233 171 0 0 chr6 94447007 94447048 -55069989 - L1M4 LINE L1 -729 5449 5409 8 1305 437 204 106 0 chr6 94447200 94447313 -55069724 + Lx9 LINE L1 7339 7463 -181 8 1305 213 39 0 0 chr6 94447313 94447339 -55069698 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1305 296 203 24 41 chr6 94447339 94447462 -55069575 + Lx9 LINE L1 7518 7638 -6 8 1305 706 234 134 31 chr6 94447467 94447661 -55069376 + B3 SINE B2 2 215 -1 8 1305 851 195 155 0 chr6 94447679 94447853 -55069184 + B3 SINE B2 3 203 -13 8 1305 796 336 79 18 chr6 94447869 94448199 -55068838 + MLT1F LTR MaLR 155 504 -44 8 1305 186 103 0 0 chr6 94448214 94448243 -55068794 + (CCAA)n Simple_repeat Simple_repeat 2 30 0 8 1305 500 282 101 14 chr6 94448415 94448624 -55068413 + MLT1E LTR MaLR 1 227 -426 8 1305 481 247 54 43 chr6 94448874 94449060 -55067977 - L1MA5 LINE L1 -1 6299 6112 8 1305 500 254 22 60 chr6 94449157 94449291 -55067746 + B1F SINE Alu 3 131 -18 8 1305 270 0 0 0 chr6 94449307 94449337 -55067700 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1305 21 89 0 0 chr6 94449515 94449571 -55067466 + AT_rich Low_complexity Low_complexity 1 56 0 8 1305 514 256 16 0 chr6 94449583 94449704 -55067333 - RSINE1 SINE B4 -40 125 3 8 1305 297 167 0 0 chr6 94449735 94449783 -55067254 - RSINE1 SINE B4 -115 50 3 8 1305 467 238 169 28 chr6 94451330 94451546 -55065491 + B4 SINE B4 6 254 -38 8 1305 378 0 0 0 chr6 94451560 94451602 -55065435 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1305 192 365 28 0 chr6 94452342 94452449 -55064588 - L2c LINE L2 -301 3086 2977 8 1305 355 319 11 0 chr6 94454857 94454951 -55062086 - PB1D10 SINE Alu -8 109 15 8 1305 1772 236 63 34 chr6 94455119 94456047 -55060990 - Lx9 LINE L1 -159 7485 6201 8 1305 441 0 0 0 chr6 94456047 94456096 -55060941 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1305 950 312 109 54 chr6 94456096 94456485 -55060552 - Lx9 LINE L1 -1273 6200 5800 8 1305 261 0 0 0 chr6 94456485 94456514 -55060523 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 8 1305 950 312 109 54 chr6 94456514 94456559 -55060478 - Lx9 LINE L1 -1674 5799 5752 8 1305 326 279 13 0 chr6 94456567 94456646 -55060391 + ID_B1 SINE B4 116 195 -29 8 1305 21 57 0 0 chr6 94457023 94457058 -55059979 + AT_rich Low_complexity Low_complexity 1 35 0 8 1305 228 250 39 26 chr6 94457208 94457286 -55059751 + ID4 SINE ID 4 82 -1 8 1305 210 294 0 0 chr6 94458328 94458379 -55058658 - ID4_ SINE ID -17 66 16 8 1305 254 330 17 9 chr6 94458839 94458955 -55058082 - MER5B DNA MER1_type -57 121 5 8 1305 378 0 0 0 chr6 94459033 94459075 -55057962 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1305 631 171 43 72 chr6 94460193 94460332 -55056705 - B1_Mur1 SINE Alu -13 136 2 8 1305 24 32 0 0 chr6 94461184 94461215 -55055822 + AT_rich Low_complexity Low_complexity 1 31 0 8 1305 315 269 65 28 chr6 94461229 94461336 -55055701 - PB1D7 SINE Alu -9 111 1 8 1305 460 235 148 35 chr6 94461431 94461634 -55055403 - B4A SINE B4 -28 264 39 8 1305 276 296 68 0 chr6 94462066 94462154 -55054883 + MLT2F LTR ERVL 251 344 -319 8 1305 507 256 37 12 chr6 94462175 94462337 -55054700 - L1M4 LINE L1 -1039 5107 4942 8 1305 242 234 61 30 chr6 94462357 94462423 -55054614 - RSINE1 SINE B4 0 165 98 8 1305 787 244 122 18 chr6 94462518 94462739 -55054298 + MTD LTR MaLR 131 374 -45 8 1305 580 257 88 147 chr6 94462815 94463136 -55053901 - L1M4 LINE L1 -1193 4953 4655 8 1305 479 176 231 58 chr6 94463136 94463257 -55053780 - B1_Mur2 SINE Alu -6 143 2 8 1305 363 269 128 50 chr6 94463259 94463439 -55053598 - B3A SINE B2 -3 195 2 8 1305 580 257 88 147 chr6 94463439 94463556 -55053481 - L1M4 LINE L1 -1492 4654 4538 8 1305 527 292 180 8 chr6 94463827 94464072 -55052965 - B4 SINE B4 -5 287 1 8 1305 356 300 99 86 chr6 94464373 94464676 -55052361 - ORR1E LTR MaLR 0 359 53 8 1305 580 233 83 6 chr6 94465097 94465278 -55051759 + B3A SINE B2 3 197 -1 8 1305 513 302 62 0 chr6 94465328 94465490 -55051547 + Lx8 LINE L1 7148 7319 -154 8 1305 701 288 6 6 chr6 94467211 94467389 -55049648 + B3A SINE B2 10 187 -11 8 1305 534 204 0 0 chr6 94467438 94467541 -55049496 + PB1D9 SINE Alu 9 111 -9 8 1305 241 252 197 25 chr6 94467541 94467560 -55049477 + B4A SINE B4 94 236 -56 8 1305 845 255 34 0 chr6 94467646 94467691 -55049346 - B3 SINE B2 -5 211 167 8 1305 237 98 0 0 chr6 94467691 94467732 -55049305 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 8 1305 845 255 34 0 chr6 94467732 94467890 -55049147 - B3 SINE B2 -50 166 2 8 1305 22 35 0 0 chr6 94467906 94467935 -55049102 + AT_rich Low_complexity Low_complexity 1 29 0 8 1305 415 243 29 0 chr6 94467992 94468095 -55048942 - PB1D10 SINE Alu 0 117 12 8 1305 326 245 43 0 chr6 94468011 94468105 -55048932 - ID_B1 SINE B4 -45 179 82 8 1305 639 328 20 51 chr6 94469077 94469331 -55047706 - B4A SINE B4 -2 290 45 8 1305 1196 62 7 0 chr6 94469406 94469552 -55047485 + B1_Mus2 SINE Alu 1 147 0 8 1305 226 47 70 0 chr6 94469556 94469599 -55047438 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 8 1305 1160 107 6 0 chr6 94469611 94469779 -55047258 + B2_Mm2 SINE B2 1 169 -26 8 1305 351 0 0 0 chr6 94469779 94469818 -55047219 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1305 293 238 55 74 chr6 94469819 94469982 -55047055 - L1MA9 LINE L1 -64 6248 6089 8 1305 417 109 0 0 chr6 94471313 94471377 -55045660 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 1305 566 347 50 33 chr6 94471883 94472402 -55044635 + L1_Rod LINE L1 91 618 -6554 8 1305 3270 260 119 16 chr6 94472399 94473490 -55043547 + Lx9 LINE L1 6188 7391 -253 8 1305 603 27 0 0 chr6 94473497 94473570 -55043467 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 1305 322 155 0 0 chr6 94474629 94474700 -55042337 - L1Md_F2 LINE L1 0 6582 6512 8 1305 532 170 7 7 chr6 94475428 94475523 -55041514 + CT-rich Low_complexity Low_complexity 42 136 0 8 1305 225 0 0 0 chr6 94475523 94475548 -55041489 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1305 532 170 7 7 chr6 94475548 94475588 -55041449 + polypyrimidine Low_complexity Low_complexity 1 41 0 8 1305 21 0 0 0 chr6 94476913 94476934 -55040103 + AT_rich Low_complexity Low_complexity 1 21 0 8 1305 854 278 23 60 chr6 94476945 94477247 -55039790 + B4A SINE B4 2 292 0 8 1305 480 289 76 86 chr6 94477358 94477582 -55039455 + B4A SINE B4 1 220 -72 8 1305 198 0 0 0 chr6 94477582 94477604 -55039433 + (CCA)n Simple_repeat Simple_repeat 1 22 0 8 1305 480 289 76 86 chr6 94477604 94477670 -55039367 + B4A SINE B4 221 288 -4 8 1305 1132 76 0 27 chr6 94477778 94477927 -55039110 + B1_Mus1 SINE Alu 1 145 -3 8 1305 376 95 13 26 chr6 94477956 94478032 -55039005 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 9 1305 257 333 139 12 chr6 94478552 94478725 -55038312 - Charlie5 DNA MER1_type -61 2563 2369 9 1305 303 178 176 10 chr6 94479067 94479169 -55037868 - MT2A LTR ERVL 0 533 415 9 1305 7401 100 36 6 chr6 94479248 94480686 -55036351 - Lx LINE L1 0 6654 5176 9 1305 218 278 0 0 chr6 94481212 94481266 -55035771 + CT-rich Low_complexity Low_complexity 1 54 0 9 1305 316 202 35 35 chr6 94481273 94481360 -55035677 - PB1D9 SINE Alu -28 92 6 9 1305 258 32 0 0 chr6 94481484 94481515 -55035522 + (TA)n Simple_repeat Simple_repeat 1 31 0 9 1305 382 315 24 30 chr6 94481854 94482021 -55035016 + MER58A DNA MER1_type 48 213 -11 9 1305 263 204 0 0 chr6 94482139 94482188 -55034849 - Lx8 LINE L1 -928 6545 6497 9 1305 898 209 10 20 chr6 94482233 94482433 -55034604 - Lx8 LINE L1 -959 6514 6317 9 1305 293 321 18 9 chr6 94482435 94482545 -55034492 - PB1D10 SINE Alu -6 111 1 9 1305 307 263 40 40 chr6 94482463 94482562 -55034475 - ID_B1 SINE B4 -61 163 65 9 1305 591 330 119 10 chr6 94482857 94483169 -55033868 + RLTR26 LTR ERVK 1 346 -296 9 1305 646 227 23 0 chr6 94484659 94484787 -55032250 + B1_Mur1 SINE Alu 3 133 -16 9 1305 232 91 45 0 chr6 94484793 94484837 -55032200 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 9 1305 247 172 36 22 chr6 94485170 94485273 -55031764 - B1F1 SINE Alu 0 117 9 9 1305 928 113 102 45 chr6 94485854 94486030 -55031007 + B2_Mm2 SINE B2 2 187 -8 9 1305 1217 260 14 11 chr6 94488024 94488304 -55028733 + B4A SINE B4 2 282 -10 9 1305 417 182 0 0 chr6 94488414 94488513 -55028524 + (TG)n Simple_repeat Simple_repeat 2 100 0 9 1305 693 152 114 0 chr6 94488802 94488934 -55028103 + B1_Mus2 SINE Alu 1 147 0 9 1305 297 68 0 0 chr6 94489808 94489852 -55027185 + (A)n Simple_repeat Simple_repeat 1 44 0 9 1305 246 299 0 102 chr6 94489881 94489989 -55027048 + PB1D10 SINE Alu 21 117 0 9 1305 1393 184 176 8 chr6 94490507 94490864 -55026173 - MTD LTR MaLR -2 417 1 9 1305 235 169 107 53 chr6 94490884 94490959 -55026078 - ID2 SINE ID -3 80 2 9 1305 603 205 0 33 chr6 94492302 94492423 -55024614 + RSINE1 SINE B4 47 163 -2 9 1305 198 0 0 0 chr6 94492613 94492635 -55024402 + (CA)n Simple_repeat Simple_repeat 2 23 0 9 1305 202 42 0 0 chr6 94492737 94492761 -55024276 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 1305 321 240 0 0 chr6 94492761 94492857 -55024180 + (TA)n Simple_repeat Simple_repeat 2 97 0 9 1305 24 32 0 0 chr6 94493207 94493238 -55023799 + AT_rich Low_complexity Low_complexity 1 31 0 9 1305 266 253 175 103 chr6 94493552 94493746 -55023291 - B4A SINE B4 -22 270 63 9 1305 387 257 231 12 chr6 94494238 94494407 -55022630 + ID_B1 SINE B4 18 223 -1 9 1305 198 0 0 0 chr6 94494410 94494432 -55022605 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 9 1305 916 208 90 20 chr6 94494941 94495142 -55021895 + B3 SINE B2 1 215 -1 9 1305 1223 27 7 0 chr6 94495224 94495370 -55021667 - B1_Mus1 SINE Alu -1 147 1 9 1305 424 299 42 42 chr6 94496031 94496296 -55020741 - L1MC4 LINE L1 -743 7299 7035 9 1305 484 153 12 0 chr6 94496304 94496389 -55020648 - L1MB7 LINE L1 -9 6175 6090 9 1305 512 174 104 0 chr6 94497150 94497294 -55019743 + Lx9 LINE L1 7481 7639 -5 9 1305 243 0 0 0 chr6 94498400 94498427 -55018610 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1305 231 225 70 0 chr6 94498803 94498874 -55018163 + B3 SINE B2 1 76 -140 9 1305 532 271 33 0 chr6 94499468 94499619 -55017418 + MER5A DNA MER1_type 8 163 -26 9 1305 186 103 0 0 chr6 94499788 94499817 -55017220 + (TTAGGG)n Simple_repeat Simple_repeat 5 33 0 9 1305 288 0 0 0 chr6 94500630 94500662 -55016375 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1305 339 85 0 0 chr6 94501503 94501550 -55015487 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1305 306 159 43 0 chr6 94502004 94502073 -55014964 + ORR1D1 LTR MaLR 39 110 -264 3 163 3148 68 8 0 chr6 94502791 94503188 -55013849 + MTB LTR MaLR 1 400 0 4 1306 324 269 25 16 chr6 94503572 94503726 -55013311 + B3 SINE B2 37 192 -3 5 1306 286 312 118 55 chr6 94503833 94503927 -55013110 + MIR SINE MIR 21 125 -137 6 1306 459 0 0 0 chr6 94503927 94503978 -55013059 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1306 286 312 118 55 chr6 94503978 94504103 -55012934 + MIR SINE MIR 126 254 -8 6 1306 183 42 0 0 chr6 94504490 94504514 -55012523 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1306 216 0 0 0 chr6 94504994 94505018 -55012019 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1306 1072 50 0 28 chr6 94505021 94505166 -55011871 - B1_Mm SINE Alu -6 141 1 1 1306 669 241 78 14 chr6 94505607 94505868 -55011169 - L1M2 LINE L1 -747 6098 5793 1 1306 307 145 0 28 chr6 94505873 94505944 -55011093 + CT-rich Low_complexity Low_complexity 2 70 0 1 1306 589 225 64 14 chr6 94505950 94506090 -55010947 - ID_B1 SINE B4 0 224 78 1 1306 2678 251 66 83 chr6 94506106 94506672 -55010365 - L1M2 LINE L1 -1085 5760 5196 1 1306 243 61 0 0 chr6 94506672 94506705 -55010332 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1306 2678 251 66 83 chr6 94506705 94507019 -55010018 - L1M2 LINE L1 -1650 5195 4915 1 1306 216 0 0 0 chr6 94507019 94507043 -55009994 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1306 2678 251 66 83 chr6 94507043 94507349 -55009688 - L1M2 LINE L1 -1931 4914 4594 1 1306 668 223 39 58 chr6 94507439 94507644 -55009393 - RLTR31_Mm LTR ERVK -356 205 5 1 1306 697 299 72 27 chr6 94507656 94508090 -55008947 - L1_Rod LINE L1 -3376 2504 2051 1 1306 4077 162 80 68 chr6 94508099 94508991 -55008046 + RMER19B LTR ERVK 1 902 0 1 1306 658 299 71 29 chr6 94509052 94509581 -55007456 - L1M2 LINE L1 -3924 2625 2049 1 1306 672 233 0 0 chr6 94509594 94509727 -55007310 + B3 SINE B2 17 149 -67 1 1306 759 219 41 46 chr6 94509756 94509952 -55007085 - B3A SINE B2 -2 196 2 2 1306 333 295 36 0 chr6 94509975 94510087 -55006950 + PB1D10 SINE Alu 2 117 0 2 1306 329 248 105 9 chr6 94510258 94510372 -55006665 - L1M3 LINE L1 -888 5252 5128 2 1306 268 256 120 0 chr6 94510530 94510647 -55006390 - ID_B1 SINE B4 -13 211 81 2 1306 197 297 171 8 chr6 94510745 94510874 -55006163 + MER5A DNA MER1_type 13 162 -27 2 1306 194 0 0 37 chr6 94512409 94512436 -55004601 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1306 1114 172 32 5 chr6 94513863 94514079 -55002958 - URR1B DNA MER1_type -3 222 1 2 1306 335 332 133 0 chr6 94514085 94514341 -55002696 - L1ME2 LINE L1 -266 5898 5609 2 1306 270 138 82 49 chr6 94514483 94514544 -55002493 - L1ME2 LINE L1 -623 5541 5479 2 1306 285 238 29 2 chr6 94514580 94514657 -55002380 - L1M2 LINE L1 -1981 4165 4090 2 1306 32 0 0 0 chr6 94514762 94514794 -55002243 + AT_rich Low_complexity Low_complexity 1 32 0 2 1306 389 314 19 12 chr6 94514816 94514977 -55002060 - RSINE1 SINE B4 -1 164 3 3 1306 3849 166 55 69 chr6 94517030 94517083 -54999954 - L1_Mur3 LINE L1 -3080 2800 2744 3 1306 237 33 0 0 chr6 94517083 94517113 -54999924 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 3 1306 3849 166 55 69 chr6 94517113 94517487 -54999550 - L1_Mur3 LINE L1 -3137 2743 2413 3 1306 3716 49 2 0 chr6 94517487 94517939 -54999098 - L1Md_F2 LINE L1 -6 6576 6124 3 1306 3849 166 55 69 chr6 94517939 94518435 -54998602 - L1_Mur3 LINE L1 -3468 2412 1889 3 1306 27012 123 30 6 chr6 94518446 94523921 -54993116 - L1_Mus4 LINE L1 -2 6634 1018 3 1306 180 0 0 0 chr6 94523922 94523942 -54993095 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1306 1129 68 7 0 chr6 94523942 94524089 -54992948 - B1_Mus1 SINE Alu 0 148 1 3 1306 27 29 0 0 chr6 94524312 94524346 -54992691 + AT_rich Low_complexity Low_complexity 1 34 0 3 1306 223 306 60 20 chr6 94525296 94525396 -54991641 + MIRb SINE MIR 43 146 -122 3 1306 256 322 33 8 chr6 94525810 94525932 -54991105 + CT-rich Low_complexity Low_complexity 2 126 0 3 1306 309 329 91 28 chr6 94526880 94527146 -54989891 + B4A SINE B4 3 292 0 4 1306 257 312 38 0 chr6 94527490 94527570 -54989467 + ID4_ SINE ID 1 83 0 4 1306 230 241 152 66 chr6 94527754 94527905 -54989132 + RSINE1 SINE B4 2 165 0 4 1306 948 168 156 5 chr6 94528435 94528621 -54988416 - B3 SINE B2 0 216 3 4 1306 231 260 110 134 chr6 94528876 94528980 -54988057 - L1M5 LINE L1 -412 5767 5651 4 1306 303 28 0 0 chr6 94528980 94529016 -54988021 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1306 183 42 0 0 chr6 94529020 94529044 -54987993 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 4 1306 231 260 110 134 chr6 94529044 94529151 -54987886 - L1M5 LINE L1 -529 5650 5567 4 1306 189 0 0 0 chr6 94529151 94529172 -54987865 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1306 231 260 110 134 chr6 94529172 94529327 -54987710 - L1M5 LINE L1 -613 5566 5407 4 1306 243 0 0 0 chr6 94529446 94529473 -54987564 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1306 278 323 31 41 chr6 94530081 94530178 -54986859 - PB1D10 SINE Alu -21 96 1 4 1306 609 110 0 0 chr6 94530303 94530394 -54986643 + (TCC)n Simple_repeat Simple_repeat 1 91 0 5 1306 405 277 187 0 chr6 94530772 94530927 -54986110 + B3A SINE B2 2 185 -13 5 1306 187 350 35 59 chr6 94531364 94531509 -54985528 - MIRb SINE MIR -8 260 120 5 1306 234 0 0 0 chr6 94531509 94531535 -54985502 + (CAGG)n Simple_repeat Simple_repeat 2 27 0 5 1306 187 350 35 59 chr6 94531535 94531644 -54985393 - MIRb SINE MIR -149 119 12 5 1306 397 281 59 7 chr6 94532832 94532968 -54984069 - RMER15 LTR ERVL 0 575 433 5 1306 357 62 0 0 chr6 94533220 94533268 -54983769 + (T)n Simple_repeat Simple_repeat 1 48 0 5 1306 1149 82 0 0 chr6 94533272 94533418 -54983619 - B1_Mus1 SINE Alu -2 146 1 5 1306 181 93 0 85 chr6 94533855 94533902 -54983135 + A-rich Low_complexity Low_complexity 1 43 0 5 1306 293 265 60 0 chr6 94535266 94535349 -54981688 + B1F1 SINE Alu 62 149 0 5 1306 325 256 51 0 chr6 94535549 94535627 -54981410 + L1MC4a LINE L1 7790 7871 -11 5 1306 207 146 42 0 chr6 94536571 94536619 -54980418 + T-rich Low_complexity Low_complexity 5 54 0 6 1306 448 216 113 0 chr6 94536815 94536913 -54980124 - B1F SINE Alu -9 118 3 6 1306 268 216 0 0 chr6 94537898 94537949 -54979088 + ID4 SINE ID 2 52 -31 6 1306 225 65 0 0 chr6 94537960 94537991 -54979046 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1306 231 285 68 68 chr6 94538820 94539042 -54977995 + L1M4 LINE L1 4291 4512 -1634 6 1306 905 136 238 5 chr6 94539048 94539262 -54977775 + ORR1D1 LTR MaLR 1 264 -110 6 1306 242 235 86 29 chr6 94539443 94539513 -54977524 - L1MA10 LINE L1 -41 6293 6220 6 1306 402 300 39 64 chr6 94539783 94539986 -54977051 - L1M5 LINE L1 -443 5736 5539 6 1306 560 317 24 18 chr6 94540124 94540294 -54976743 - B3A SINE B2 -27 171 1 6 1306 286 192 93 27 chr6 94540443 94540518 -54976519 - L1MC LINE L1 -932 5214 5135 6 1306 28 0 0 0 chr6 94540518 94540546 -54976491 + AT_rich Low_complexity Low_complexity 1 28 0 7 1306 245 294 40 23 chr6 94540749 94540945 -54976092 - L1M5 LINE L1 -1025 5121 4921 6 1306 466 294 19 5 chr6 94541359 94541576 -54975461 - L1M5 LINE L1 -1381 4765 4542 6 1306 523 203 35 13 chr6 94541613 94541747 -54975290 - ORR1D1 LTR MaLR -2 392 254 7 1306 416 238 29 0 chr6 94541852 94541957 -54975080 + PB1D10 SINE Alu 2 109 -8 7 1306 886 176 21 11 chr6 94543660 94543849 -54973188 - URR1B DNA MER1_type 0 225 35 7 1306 191 286 31 31 chr6 94546342 94546407 -54970630 - L2c LINE L2 -22 3365 3301 7 1306 1081 214 262 0 chr6 94546408 94546740 -54970297 - MTD LTR MaLR 0 419 1 7 1306 536 225 47 53 chr6 94547535 94547685 -54969352 + B1_Mur1 SINE Alu 1 149 0 7 1306 650 168 6 45 chr6 94549611 94549626 -54967411 + ID_B1 SINE B4 75 221 0 7 1306 1053 22 7 0 chr6 94549626 94549764 -54967273 + B1_Mus2 SINE Alu 9 147 0 7 1306 643 256 166 9 chr6 94550097 94550362 -54966675 - B4A SINE B4 -1 291 1 7 1306 340 273 142 7 chr6 94552126 94552281 -54964756 - B4A SINE B4 -116 176 1 8 1306 285 190 0 65 chr6 94552572 94552634 -54964403 - RSINE1 SINE B4 -93 72 15 8 1306 22 0 0 0 chr6 94556000 94556022 -54961015 + AT_rich Low_complexity Low_complexity 1 22 0 8 1306 401 285 121 40 chr6 94556674 94556897 -54960140 + B4 SINE B4 2 242 -50 8 1306 517 277 60 43 chr6 94557511 94557696 -54959341 - MER2 DNA MER2_type -8 337 150 8 1306 441 233 50 62 chr6 94560828 94560839 -54956198 - CYRA11_Mm Unknown Y-chromosome -295 322 239 8 1306 891 141 7 0 chr6 94560839 94560981 -54956056 + URR1B DNA MER1_type 83 225 0 8 1306 248 307 52 35 chr6 94561798 94561970 -54955067 - L1MB8 LINE L1 -79 6099 5925 8 1306 233 358 9 35 chr6 94563869 94563982 -54953055 - MER5A1 DNA MER1_type -53 113 4 8 1306 199 257 26 26 chr6 94571248 94571324 -54945713 - MIR3 SINE MIR -15 193 118 8 1306 524 244 69 113 chr6 94571942 94572173 -54944864 + ID_B1 SINE B4 2 222 -2 9 1306 209 259 63 111 chr6 94579743 94579869 -54937168 + MIR SINE MIR 19 138 -124 9 1306 193 263 0 0 chr6 94580837 94580875 -54936162 + MIR SINE MIR 112 149 -59 9 1306 553 322 100 32 chr6 94582300 94582550 -54934487 + MER2 DNA MER2_type 16 282 -63 9 1306 308 323 44 22 chr6 94582631 94582767 -54934270 + B3A SINE B2 57 195 -3 9 1306 317 167 17 0 chr6 94582773 94582833 -54934204 + L1M3 LINE L1 5321 5381 -799 9 1306 329 257 80 0 chr6 94583010 94583123 -54933914 + L1M3 LINE L1 5650 5771 -400 9 1306 711 307 145 20 chr6 94583139 94583435 -54933602 + RCHARR1 DNA MER1_type 4 336 -638 9 1306 416 198 77 0 chr6 94583438 94583529 -54933508 + RCHARR1 DNA MER1_type 813 910 -64 9 1306 935 246 110 10 chr6 94583540 94583700 -54933337 + RCHARR1 DNA MER1_type 342 514 -460 9 1306 396 0 0 0 chr6 94583700 94583744 -54933293 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1306 935 246 110 10 chr6 94583744 94583891 -54933146 + RCHARR1 DNA MER1_type 515 679 -295 9 1306 252 0 0 0 chr6 94583891 94583919 -54933118 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1306 282 213 158 13 chr6 94584046 94584122 -54932915 + B1F SINE Alu 55 141 -8 9 1306 378 0 0 0 chr6 94584191 94584233 -54932804 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 9 1306 580 247 125 87 chr6 94586377 94586540 -54930497 - B3 SINE B2 0 216 45 1 1306 1337 77 66 0 chr6 94586540 94586721 -54930316 - B2_Mm2 SINE B2 -2 193 1 1 1306 580 247 125 87 chr6 94586721 94586765 -54930272 - B3 SINE B2 -172 44 1 1 1306 681 270 39 28 chr6 94587488 94587667 -54929370 - MER58A DNA MER1_type -7 217 37 1 1306 382 360 95 33 chr6 94588936 94589177 -54927860 - L1ME3A LINE L1 -45 6128 5873 1 1306 183 186 0 0 chr6 94589220 94589263 -54927774 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1306 221 225 40 40 chr6 94589263 94589337 -54927700 - PB1D10 SINE Alu -3 114 41 1 1306 533 198 9 70 chr6 94589746 94589860 -54927177 + RSINE1 SINE B4 3 109 -56 1 1306 381 102 0 0 chr6 94589864 94589923 -54927114 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1306 439 296 65 65 chr6 94590797 94590865 -54926172 - CYRA11_Mm Unknown Y-chromosome -166 451 177 1 1306 1133 174 53 0 chr6 94590865 94591072 -54925965 + URR1A DNA MER1_type 3 220 -6 1 1306 264 314 33 50 chr6 94591193 94591374 -54925663 + L1MC2 LINE L1 5860 6037 -307 1 1306 265 234 245 14 chr6 94591425 94591568 -54925469 + L1MC2 LINE L1 6160 6335 -9 1 1306 404 235 58 10 chr6 94591582 94591685 -54925352 + PB1D10 SINE Alu 1 108 -9 1 1306 268 365 0 0 chr6 94591767 94591852 -54925185 + L2a LINE L2 3342 3426 0 1 1306 24 0 0 0 chr6 94593615 94593639 -54923398 + AT_rich Low_complexity Low_complexity 1 24 0 1 1306 763 201 129 60 chr6 94593705 94593906 -54923131 - B3 SINE B2 0 216 2 1 1306 288 212 32 96 chr6 94595249 94595374 -54921663 + L1MD1 LINE L1 5006 5122 -1024 1 1306 380 228 82 57 chr6 94595391 94595549 -54921488 + L1MD1 LINE L1 5210 5371 -775 1 1306 249 310 11 0 chr6 94595638 94595725 -54921312 + L1MD1 LINE L1 5685 5772 -587 1 1306 451 243 151 22 chr6 94595858 94596043 -54920994 + L1MD1 LINE L1 6005 6213 -29 1 1306 255 125 0 0 chr6 94596191 94596231 -54920806 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1306 242 263 18 0 chr6 94597939 94597996 -54919041 + GA-rich Low_complexity Low_complexity 3 60 0 1 1306 2256 155 31 112 chr6 94599387 94599550 -54917487 - RLTR24 LTR ERV1 -62 467 313 1 1306 219 36 0 0 chr6 94599550 94599578 -54917459 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1306 2256 155 31 112 chr6 94599578 94599922 -54917115 - RLTR24 LTR ERV1 -217 312 1 1 1306 219 130 56 0 chr6 94601150 94601204 -54915833 + GA-rich Low_complexity Low_complexity 2 58 0 1 1306 784 242 24 30 chr6 94601377 94601543 -54915494 + B3 SINE B2 33 197 -19 1 1306 188 299 45 0 chr6 94603397 94603464 -54913573 - MIRc SINE MIR -122 146 77 1 1306 183 80 0 0 chr6 94603654 94603679 -54913358 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1306 458 351 23 34 chr6 94604018 94604195 -54912842 + ORR1E LTR MaLR 1 175 -184 1 1306 1851 185 78 56 chr6 94606442 94606941 -54910096 + Lx5 LINE L1 6491 7058 0 1 1306 184 314 154 41 chr6 94607235 94607358 -54909679 - MIRc SINE MIR -69 199 63 1 1306 780 252 134 26 chr6 94609168 94609474 -54907563 - MER2 DNA MER2_type -3 342 4 1 1306 302 343 42 7 chr6 94609634 94609778 -54907259 + MIRc SINE MIR 70 218 -50 1 1306 201 154 0 0 chr6 94610456 94610495 -54906542 + T-rich Low_complexity Low_complexity 4 42 0 1 1306 627 317 78 44 chr6 94611160 94611454 -54905583 - MER96B DNA hAT -112 305 2 1 1306 180 298 17 17 chr6 94611458 94611516 -54905521 + MIRm SINE MIR 204 261 -15 1 1306 263 270 44 22 chr6 94611721 94611812 -54905225 + MLT1B LTR MaLR 8 100 -290 1 1306 283 256 12 0 chr6 94612007 94612093 -54904944 + MLT1B LTR MaLR 191 277 -113 1 1306 511 255 51 65 chr6 94612537 94612751 -54904286 + Lx6 LINE L1 6003 6213 -1247 1 1306 434 229 30 50 chr6 94612822 94612923 -54904114 + PB1D10 SINE Alu 19 117 0 1 1306 287 243 422 0 chr6 94613484 94613657 -54903380 - Tigger7 DNA MER2_type -8 2483 2238 1 1306 599 218 24 0 chr6 94613654 94613778 -54903259 - Tigger7 DNA MER2_type -2080 411 285 1 1306 477 291 120 6 chr6 94614363 94614546 -54902491 + B3 SINE B2 2 205 -11 1 1306 360 224 53 0 chr6 94614560 94614636 -54902401 - RSINE1 SINE B4 -9 156 77 1 1306 1247 129 18 48 chr6 94614654 94614882 -54902155 - URR1B DNA MER1_type 0 225 5 1 1306 619 202 61 23 chr6 94614916 94615048 -54901989 - B1_Mur4 SINE Alu -1 149 13 1 1306 427 195 186 8 chr6 94615076 94615200 -54901837 - B1_Mur1 SINE Alu -2 147 2 1 1306 378 0 0 0 chr6 94615251 94615293 -54901744 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1306 300 27 0 0 chr6 94615370 94615407 -54901630 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1306 327 302 58 41 chr6 94615431 94615552 -54901485 + MER20 DNA MER1_type 45 167 -52 1 1306 351 0 0 0 chr6 94615805 94615844 -54901193 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1306 864 264 63 15 chr6 94617703 94618007 -54899030 - L1MB3 LINE L1 -274 6017 5699 1 1306 336 289 48 0 chr6 94618767 94618871 -54898166 - MER3 DNA MER1_type -24 185 77 1 1306 237 158 186 34 chr6 94619023 94619082 -54897955 + ID4_ SINE ID 16 83 0 1 1306 239 250 43 72 chr6 94619090 94619159 -54897878 + ID4 SINE ID 13 79 -4 1 1306 641 225 38 30 chr6 94619227 94619360 -54897677 - ID_B1 SINE B4 0 224 91 1 1306 935 63 158 0 chr6 94619747 94619874 -54897163 + B1_Mus2 SINE Alu 1 147 0 1 1306 766 217 106 162 chr6 94620380 94620578 -54896459 + B3 SINE B2 9 208 -8 1 1306 646 207 42 21 chr6 94620767 94620910 -54896127 + B3 SINE B2 63 208 -8 1 1306 207 0 0 0 chr6 94620913 94620936 -54896101 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1306 25 0 0 0 chr6 94621665 94621690 -54895347 + AT_rich Low_complexity Low_complexity 1 25 0 1 1306 186 43 0 0 chr6 94623167 94623190 -54893847 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1 1306 720 180 0 8 chr6 94623191 94623314 -54893723 - B1_Mus2 SINE Alu 0 147 26 1 1306 262 283 206 0 chr6 94623353 94623445 -54893592 - B3 SINE B2 -48 168 58 1 1306 436 211 0 0 chr6 94623471 94623547 -54893490 - B3 SINE B2 -134 82 7 1 1306 1457 140 14 0 chr6 94627759 94627981 -54889056 - URR1B DNA MER1_type 0 225 1 1 1306 524 181 229 51 chr6 94628859 94629034 -54888003 + Tigger5 DNA MER2_type 37 242 -2164 1 1306 238 315 14 34 chr6 94629261 94629409 -54887628 + L1MB7 LINE L1 5551 5695 -483 1 1306 252 193 47 43 chr6 94629427 94629497 -54887540 + B1F2 SINE Alu 10 86 -61 1 1306 267 322 33 0 chr6 94629508 94629598 -54887439 + L1MB7 LINE L1 5697 5789 -385 1 1306 233 29 0 29 chr6 94629598 94629633 -54887404 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1306 822 254 32 0 chr6 94629676 94629865 -54887172 + B3A SINE B2 1 195 -3 1 1306 298 301 32 0 chr6 94629877 94630000 -54887037 + L1MB7 LINE L1 5818 5944 -240 1 1306 326 299 72 22 chr6 94630025 94630206 -54886831 + L1MB7 LINE L1 5994 6183 -1 1 1306 643 177 0 9 chr6 94630220 94630334 -54886703 + PB1D9 SINE Alu 2 114 -6 1 1306 252 289 48 0 chr6 94630334 94630417 -54886620 + GA-rich Low_complexity Low_complexity 3 89 0 1 1306 252 143 0 0 chr6 94630483 94630525 -54886512 + (CAA)n Simple_repeat Simple_repeat 2 43 0 1 1306 591 237 183 22 chr6 94632746 94632970 -54884067 + Lx9 LINE L1 7385 7644 0 1 1306 367 257 8 96 chr6 94632994 94633119 -54883918 + PB1D10 SINE Alu 1 114 -3 1 1307 678 269 29 0 chr6 94634375 94634546 -54882491 + ID_B1 SINE B4 35 210 -14 1 1307 381 278 70 0 chr6 94637454 94637569 -54879468 - ID_B1 SINE B4 -2 222 100 1 1307 621 326 100 26 chr6 94637623 94637894 -54879143 - B4 SINE B4 -1 291 1 1 1307 501 311 98 36 chr6 94638210 94638484 -54878553 + B4A SINE B4 2 292 0 1 1307 258 227 76 0 chr6 94639127 94639193 -54877844 - MER46C DNA MER2_type -2 336 266 1 1307 280 239 172 19 chr6 94639682 94639814 -54877223 - MIRc SINE MIR -115 161 7 1 1307 734 246 0 28 chr6 94639926 94640106 -54876931 + B3A SINE B2 1 175 -23 1 1307 209 83 28 0 chr6 94640123 94640159 -54876878 + (CATA)n Simple_repeat Simple_repeat 4 40 0 1 1307 209 33 33 0 chr6 94640562 94640592 -54876445 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 1307 253 246 104 24 chr6 94641638 94641763 -54875274 + L1MC5 LINE L1 7721 7855 -106 1 1307 183 202 176 71 chr6 94642283 94642368 -54874669 + L3 LINE CR1 4249 4342 -147 1 1307 578 289 40 17 chr6 94643938 94644114 -54872923 + B3A SINE B2 3 182 -16 1 1307 249 254 0 0 chr6 94644867 94644938 -54872099 + GA-rich Low_complexity Low_complexity 2 72 0 1 1307 293 270 0 16 chr6 94645545 94645609 -54871428 + ID SINE ID 6 68 -156 1 1307 265 241 0 71 chr6 94645684 94645769 -54871268 + ID4 SINE ID 2 80 -3 1 1307 411 73 0 0 chr6 94647283 94647338 -54869699 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1307 26 0 0 0 chr6 94647757 94647783 -54869254 + AT_rich Low_complexity Low_complexity 1 26 0 1 1307 21 71 0 0 chr6 94649541 94649583 -54867454 + GC_rich Low_complexity Low_complexity 1 42 0 1 1307 22 0 0 0 chr6 94649725 94649747 -54867290 + GC_rich Low_complexity Low_complexity 1 22 0 1 1307 21 36 0 0 chr6 94650186 94650214 -54866823 + GC_rich Low_complexity Low_complexity 1 28 0 1 1307 551 74 12 0 chr6 94651000 94651081 -54865956 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 1307 331 257 72 18 chr6 94651592 94651703 -54865334 - PB1D10 SINE Alu 0 117 1 1 1307 421 284 77 57 chr6 94652119 94652313 -54864724 - B3A SINE B2 0 198 1 1 1307 423 264 11 0 chr6 94652318 94652409 -54864628 - PB1D7 SINE Alu 0 120 29 1 1307 487 198 9 54 chr6 94652452 94652564 -54864473 + RSINE1 SINE B4 59 165 0 1 1307 25 0 0 0 chr6 94652584 94652609 -54864428 + AT_rich Low_complexity Low_complexity 1 25 0 1 1307 670 176 17 0 chr6 94652617 94652736 -54864301 - B3 SINE B2 0 216 96 1 1307 454 279 19 0 chr6 94653420 94653524 -54863513 - ID_B1 SINE B4 -5 219 114 1 1307 441 0 0 0 chr6 94653688 94653737 -54863300 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1307 624 243 6 32 chr6 94653752 94653909 -54863128 + RSINE1 SINE B4 2 154 -11 1 1307 333 0 0 0 chr6 94654127 94654164 -54862873 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1 1307 195 326 56 11 chr6 94654188 94654278 -54862759 + MIRc SINE MIR 61 154 -114 2 1307 731 271 119 20 chr6 94654317 94654569 -54862468 + B4A SINE B4 2 278 -14 2 1307 230 29 0 56 chr6 94655065 94655101 -54861936 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1307 308 239 44 33 chr6 94655898 94655989 -54861048 - PB1D10 SINE Alu -2 115 24 2 1307 280 155 18 80 chr6 94656288 94656400 -54860637 + (TTATA)n Simple_repeat Simple_repeat 1 105 0 2 1307 751 279 6 23 chr6 94657029 94657205 -54859832 - ID_B1 SINE B4 -28 196 24 2 1307 447 35 0 0 chr6 94657508 94657565 -54859472 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1307 267 31 0 0 chr6 94657566 94657598 -54859439 + (CCA)n Simple_repeat Simple_repeat 3 34 0 2 1307 596 287 54 18 chr6 94657755 94657922 -54859115 + B4A SINE B4 1 173 -119 2 1307 628 287 26 26 chr6 94657942 94658135 -54858902 + B3 SINE B2 19 211 -5 2 1307 661 229 27 20 chr6 94658140 94658287 -54858750 - B1_Mur3 SINE Alu 0 149 2 2 1307 293 260 18 115 chr6 94658189 94658302 -54858735 - MT2B LTR ERVL -345 256 155 2 1307 442 213 21 0 chr6 94658345 94658439 -54858598 + RSINE1 SINE B4 2 97 -68 2 1307 228 276 32 38 chr6 94658715 94658873 -54858164 + (CA)n Simple_repeat Simple_repeat 1 157 0 2 1307 308 291 133 67 chr6 94659268 94659478 -54857559 + MLT1H LTR MaLR 76 299 -250 2 1307 207 0 0 0 chr6 94659559 94659582 -54857455 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1307 923 214 67 5 chr6 94659656 94659849 -54857188 - B3 SINE B2 -11 205 1 2 1307 355 329 27 14 chr6 94659900 94660048 -54856989 + MLT1H LTR MaLR 399 548 -1 2 1307 655 213 66 114 chr6 94660349 94660577 -54856460 + ID_B1 SINE B4 1 217 -7 2 1307 495 316 13 30 chr6 94661122 94661278 -54855759 - MLT1A1 LTR MaLR -15 393 201 2 1307 571 223 146 0 chr6 94661327 94661457 -54855580 + RSINE1 SINE B4 3 151 -14 2 1307 1528 67 0 5 chr6 94661630 94661825 -54855212 - B2_Mm2 SINE B2 0 195 2 2 1307 239 279 89 30 chr6 94662035 94662135 -54854902 - MIR SINE MIR -113 155 39 2 1307 816 216 0 0 chr6 94663025 94663164 -54853873 - B1F SINE Alu -10 139 1 2 1307 333 0 0 0 chr6 94663208 94663245 -54853792 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 2 1307 705 272 118 52 chr6 94663266 94663537 -54853500 + B4 SINE B4 4 292 0 2 1307 536 148 0 9 chr6 94663547 94663656 -54853381 + (CA)n Simple_repeat Simple_repeat 2 109 0 2 1307 718 232 90 42 chr6 94663656 94663845 -54853192 + ID_B1 SINE B4 26 223 -1 2 1307 236 317 123 7 chr6 94663728 94663874 -54853163 - YREP_Mm Unknown Unknown -1528 284 122 2 1307 567 43 0 0 chr6 94663901 94663971 -54853066 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1307 792 138 24 0 chr6 94663975 94664098 -54852939 - B1_Mus1 SINE Alu -11 137 12 2 1307 294 165 329 0 chr6 94664137 94664222 -54852815 + B3A SINE B2 1 113 -85 2 1307 309 51 0 0 chr6 94664235 94664274 -54852763 + (TAAAA)n Simple_repeat Simple_repeat 5 43 0 2 1307 586 366 28 9 chr6 94664390 94664608 -54852429 - MER58A DNA MER1_type 0 224 3 2 1307 246 95 0 0 chr6 94665914 94665956 -54851081 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1307 241 208 62 0 chr6 94666110 94666158 -54850879 - PB1D10 SINE Alu -2 115 65 2 1307 807 271 60 0 chr6 94666115 94666314 -54850723 - ID_B1 SINE B4 -7 217 7 2 1307 876 144 244 17 chr6 94666684 94666860 -54850177 + B3 SINE B2 1 216 0 2 1307 23 0 0 0 chr6 94666860 94666883 -54850154 + AT_rich Low_complexity Low_complexity 1 23 0 2 1307 323 195 0 25 chr6 94666973 94667052 -54849985 + GA-rich Low_complexity Low_complexity 1 77 0 2 1307 981 138 168 22 chr6 94667062 94667247 -54849790 + B3 SINE B2 2 213 -3 2 1307 230 0 33 0 chr6 94667253 94667283 -54849754 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1307 856 146 0 0 chr6 94667290 94667427 -54849610 + B1_Mus1 SINE Alu 2 138 -10 2 1307 243 0 0 0 chr6 94667427 94667454 -54849583 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1307 665 326 0 30 chr6 94667459 94667658 -54849379 + B4 SINE B4 88 280 -12 2 1307 342 0 0 0 chr6 94667661 94667699 -54849338 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1307 828 280 34 26 chr6 94668075 94668343 -54848694 + MER102b DNA MER1_type 1 270 -71 2 1307 318 259 24 0 chr6 94668967 94669052 -54847985 - MIRc SINE MIR -121 147 61 2 1307 609 255 0 14 chr6 94669278 94669425 -54847612 + B1F SINE Alu 2 146 -3 2 1307 342 366 8 15 chr6 94669665 94669798 -54847239 - RSINE1 SINE B4 -30 135 4 2 1307 1160 223 144 16 chr6 94669827 94670209 -54846828 + RLTR16 LTR ERVK 1 431 -74 2 1307 234 257 83 65 chr6 94670223 94670331 -54846706 - ORR1E LTR MaLR -166 193 84 2 1307 493 274 78 0 chr6 94670502 94670655 -54846382 - B4A SINE B4 -6 286 122 2 1307 253 169 0 25 chr6 94670710 94670789 -54846248 - Lx9 LINE L1 -22 7622 7546 2 1307 396 0 0 0 chr6 94670802 94670846 -54846191 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1307 4965 192 73 9 chr6 94670850 94671855 -54845182 - Lx9 LINE L1 -188 7456 6388 2 1307 405 180 124 18 chr6 94672051 94672164 -54844873 - Lx9 LINE L1 -1618 6026 5902 2 1307 23 0 0 0 chr6 94672720 94672743 -54844294 + AT_rich Low_complexity Low_complexity 1 23 0 2 1307 1308 208 81 18 chr6 94672774 94673109 -54843928 - Lx9 LINE L1 -1763 5933 5547 2 1307 3362 175 61 81 chr6 94673107 94673476 -54843561 + L1_Rod LINE L1 4697 5038 -809 2 1307 2259 72 68 3 chr6 94673476 94673783 -54843254 - ORR1A2 LTR MaLR 0 327 1 2 1307 3362 175 61 81 chr6 94673783 94674282 -54842755 + L1_Rod LINE L1 5039 5548 -299 2 1307 266 242 0 0 chr6 94674282 94674344 -54842693 - B4 SINE B4 -196 96 35 2 1307 318 247 14 0 chr6 94674606 94674679 -54842358 + MLT1G3 LTR MaLR 437 510 -85 2 1307 1406 316 16 35 chr6 94675010 94675669 -54841368 + L1MA4 LINE L1 5397 6036 -153 2 1307 322 309 0 0 chr6 94675669 94675753 -54841284 + MTE2b LTR MaLR 20 103 -276 2 1307 234 305 124 0 chr6 94675757 94675862 -54841175 + MLT1D LTR MaLR 380 497 -8 2 1307 748 165 279 6 chr6 94676248 94676413 -54840624 + B3 SINE B2 1 210 -6 2 1307 198 0 0 0 chr6 94676765 94676787 -54840250 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1307 943 233 53 60 chr6 94676926 94677145 -54839892 + B4 SINE B4 4 220 -72 2 1307 252 0 0 0 chr6 94677145 94677173 -54839864 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2 1307 943 233 53 60 chr6 94677173 94677236 -54839801 + B4 SINE B4 221 284 -8 2 1307 194 0 39 0 chr6 94677251 94677277 -54839760 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1307 414 0 0 0 chr6 94677277 94677322 -54839715 + (GA)n Simple_repeat Simple_repeat 2 47 0 2 1307 420 260 38 9 chr6 94677796 94677901 -54839136 + B1F SINE Alu 41 148 -1 2 1307 508 219 24 8 chr6 94677998 94678122 -54838915 + B3A SINE B2 3 128 -70 2 1307 405 0 0 0 chr6 94678167 94678212 -54838825 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1307 747 259 35 5 chr6 94678212 94678410 -54838627 - ID_B1 SINE B4 -16 208 5 2 1307 186 43 0 0 chr6 94678473 94678496 -54838541 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 2 1307 977 71 48 34 chr6 94678496 94678636 -54838401 - B1_Mus1 SINE Alu -5 143 2 2 1307 303 71 0 0 chr6 94678716 94678758 -54838279 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1307 342 224 56 56 chr6 94678758 94678841 -54838196 - RSINE1 SINE B4 -25 140 56 2 1307 620 182 7 0 chr6 94679066 94679203 -54837834 + GA-rich Low_complexity Low_complexity 1 138 0 2 1307 317 236 154 21 chr6 94679803 94679946 -54837091 - MER5A1 DNA MER1_type -1 165 4 2 1307 859 271 22 0 chr6 94680113 94680342 -54836695 - B4A SINE B4 -58 234 1 2 1307 197 270 95 0 chr6 94680422 94680485 -54836552 - MIRc SINE MIR -144 124 56 2 1307 253 216 39 51 chr6 94681248 94681326 -54835711 + ID4 SINE ID 3 79 -4 2 1307 423 0 0 0 chr6 94681366 94681413 -54835624 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1307 387 0 0 0 chr6 94681413 94681455 -54835582 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1307 440 145 13 0 chr6 94681549 94681625 -54835412 + PB1D9 SINE Alu 34 110 -10 2 1307 214 209 15 15 chr6 94681639 94681707 -54835330 + (CCAA)n Simple_repeat Simple_repeat 2 69 0 2 1307 243 0 0 0 chr6 94681718 94681745 -54835292 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 2 1307 532 285 63 24 chr6 94681832 94682087 -54834950 + L1M4 LINE L1 5315 5579 -599 2 1307 334 218 55 15 chr6 94682305 94682505 -54834532 + Zaphod DNA Tip100 750 957 -3074 2 1307 740 213 148 5 chr6 94682784 94682973 -54834064 - B3 SINE B2 0 216 1 2 1307 394 225 0 0 chr6 94683385 94683456 -54833581 - ID4 SINE ID -10 73 3 2 1307 498 17 0 0 chr6 94683500 94683559 -54833478 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1307 180 0 0 0 chr6 94683561 94683581 -54833456 + (TC)n Simple_repeat Simple_repeat 2 21 0 2 1307 407 258 192 0 chr6 94683614 94683734 -54833303 - B3A SINE B2 -55 143 1 2 1307 307 57 93 19 chr6 94684481 94684535 -54832502 + B1F SINE Alu 90 147 -2 2 1307 1051 229 39 36 chr6 94684708 94684989 -54832048 + B4A SINE B4 4 285 -7 2 1307 218 204 20 0 chr6 94684997 94685046 -54831991 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1307 413 202 82 12 chr6 94685079 94685164 -54831873 + PB1D10 SINE Alu 12 102 -15 2 1307 1118 122 0 4 chr6 94685723 94685966 -54831071 + (TG)n Simple_repeat Simple_repeat 1 241 0 2 1307 243 0 0 0 chr6 94686051 94686078 -54830959 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 1307 1785 160 5 46 chr6 94686219 94686587 -54830450 - MTC-int LTR MaLR -905 353 1 2 1307 1746 174 81 0 chr6 94686615 94686959 -54830078 - MTC LTR MaLR -49 372 1 2 1307 266 236 41 14 chr6 94687034 94687107 -54829930 + ID4 SINE ID 5 79 -4 2 1307 2190 150 39 26 chr6 94687113 94687455 -54829582 + ORR1B1 LTR MaLR 1 349 -45 2 1307 1371 75 21 16 chr6 94687455 94687644 -54829393 + B2_Mm2 SINE B2 2 191 -4 3 1307 2190 150 39 26 chr6 94687644 94687690 -54829347 + ORR1B1 LTR MaLR 350 394 0 2 1307 226 314 56 14 chr6 94688041 94688112 -54828925 - ID4_ SINE ID -4 79 6 3 1307 550 225 99 8 chr6 94688147 94688268 -54828769 - B1_Mur1 SINE Alu -8 141 10 3 1307 430 299 36 43 chr6 94688268 94688287 -54828750 - B4 SINE B4 -74 218 80 3 1307 874 220 40 10 chr6 94688291 94688493 -54828544 - B3 SINE B2 -2 214 7 3 1307 788 233 203 14 chr6 94688545 94688841 -54828196 - Lx8 LINE L1 -2 7471 7120 3 1307 282 209 0 15 chr6 94688841 94688909 -54828128 + URR1B DNA MER1_type 159 225 0 3 1307 343 234 159 7 chr6 94688926 94689064 -54827973 + L1ME3A LINE L1 6005 6163 -10 3 1307 402 21 0 0 chr6 94689224 94689271 -54827766 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1307 444 299 73 15 chr6 94689883 94690087 -54826950 + ID_B1 SINE B4 4 219 -5 3 1307 195 129 0 0 chr6 94690878 94690909 -54826128 + (CAT)n Simple_repeat Simple_repeat 2 32 0 3 1307 802 176 8 20 chr6 94691023 94691267 -54825770 + (CATATA)n Simple_repeat Simple_repeat 1 240 0 3 1307 444 226 0 0 chr6 94691587 94691680 -54825357 - Lx4B LINE L1 -92 6966 6874 3 1307 495 168 0 59 chr6 94691722 94691823 -54825214 - Lx4B LINE L1 -266 6792 6698 3 1307 702 216 45 45 chr6 94692033 94692232 -54824805 + MTE2b LTR MaLR 144 342 -37 3 1307 574 273 45 0 chr6 94692252 94692406 -54824631 - RSINE1 SINE B4 -2 163 3 3 1307 1334 59 65 0 chr6 94692585 94692755 -54824282 + B2_Mm2 SINE B2 1 181 -14 3 1307 785 107 0 8 chr6 94692756 94692879 -54824158 + (GAAAA)n Simple_repeat Simple_repeat 4 125 0 3 1307 396 278 43 36 chr6 94692928 94693066 -54823971 + ID_B1 SINE B4 80 218 -6 3 1307 395 286 91 21 chr6 94693231 94693374 -54823663 - MER20 DNA MER1_type -3 216 64 3 1307 434 300 112 82 chr6 94693503 94693772 -54823265 - B4 SINE B4 -14 278 2 3 1307 302 189 66 151 chr6 94693779 94693885 -54823152 - PB1D10 SINE Alu -4 113 17 3 1307 636 196 36 14 chr6 94693909 94694049 -54822988 + B3A SINE B2 1 143 -55 3 1307 255 125 0 0 chr6 94694053 94694093 -54822944 + (CG)n Simple_repeat Simple_repeat 2 41 0 3 1307 1014 111 0 0 chr6 94694093 94694426 -54822611 + (CA)n Simple_repeat Simple_repeat 1 333 0 3 1307 2244 23 0 8 chr6 94694489 94694755 -54822282 + L1_Mm LINE L1 3258 3521 -2362 3 1307 398 277 25 81 chr6 94695057 94695218 -54821819 - RSINE1 SINE B4 0 165 14 3 1307 460 247 12 25 chr6 94695826 94695988 -54821049 + (TG)n Simple_repeat Simple_repeat 2 161 0 3 1307 1033 300 64 3 chr6 94695988 94696302 -54820735 - MER2 DNA MER2_type -3 342 10 3 1307 734 239 41 68 chr6 94696374 94696759 -54820278 + MER82 DNA MER2_type 53 502 -151 3 1307 603 206 8 16 chr6 94697147 94697275 -54819762 - B1_Mur1 SINE Alu -10 139 13 3 1307 590 286 99 11 chr6 94697323 94697585 -54819452 + B4A SINE B4 2 286 -6 3 1307 247 203 13 13 chr6 94698676 94698751 -54818286 + CT-rich Low_complexity Low_complexity 3 77 0 3 1307 566 68 25 33 chr6 94698849 94698971 -54818066 + (TG)n Simple_repeat Simple_repeat 2 122 0 3 1307 1222 201 5 0 chr6 94699270 94699484 -54817553 - B3 SINE B2 0 216 2 3 1307 229 269 12 82 chr6 94700134 94700219 -54816818 + ID4 SINE ID 1 79 -4 3 1307 213 39 0 0 chr6 94700221 94700247 -54816790 + (TTA)n Simple_repeat Simple_repeat 1 26 0 3 1307 368 227 114 0 chr6 94700248 94700336 -54816701 - ID_B1 SINE B4 -10 214 117 3 1307 24 0 0 0 chr6 94701107 94701131 -54815906 + GC_rich Low_complexity Low_complexity 1 24 0 3 1307 294 151 19 0 chr6 94701245 94701298 -54815739 + MamGypLTR3 LTR Gypsy 549 602 -237 3 1307 243 0 0 0 chr6 94701619 94701646 -54815391 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1307 496 204 0 0 chr6 94701847 94701935 -54815102 + ID_B1 SINE B4 130 217 -7 3 1307 248 247 0 138 chr6 94701926 94701972 -54815065 - MER112 DNA MER1_type -180 81 41 3 1307 3152 49 13 3 chr6 94701972 94702364 -54814673 - MTA_Mm LTR MaLR 0 396 1 3 1307 248 247 0 138 chr6 94702364 94702411 -54814626 - MER112 DNA MER1_type -221 40 1 3 1307 278 236 0 0 chr6 94702426 94702481 -54814556 + B4A SINE B4 20 74 -218 3 1307 1935 141 26 83 chr6 94702526 94702875 -54814162 + ORR1A4 LTR MaLR 1 329 0 3 1307 447 294 117 36 chr6 94703119 94703366 -54813671 + B4A SINE B4 5 271 -21 3 1307 450 0 0 0 chr6 94703402 94703452 -54813585 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1307 491 257 168 10 chr6 94703671 94703879 -54813158 - MER33 DNA MER1_type -83 241 1 3 1307 1086 203 18 0 chr6 94703927 94704144 -54812893 + ID_B1 SINE B4 3 223 -1 3 1307 188 245 0 54 chr6 94704837 94704893 -54812144 - MIRm SINE MIR -125 151 99 3 1307 329 341 29 29 chr6 94705273 94705516 -54811521 + L2a LINE L2 3127 3426 0 3 1307 245 200 0 0 chr6 94705603 94705653 -54811384 + MIR3 SINE MIR 157 206 -2 3 1307 360 0 0 0 chr6 94706287 94706327 -54810710 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1307 244 169 0 58 chr6 94706513 94706582 -54810455 + (TATG)n Simple_repeat Simple_repeat 2 66 0 3 1307 469 302 18 30 chr6 94706614 94706781 -54810256 - B4A SINE B4 -44 248 84 3 1307 390 297 97 6 chr6 94706831 94707007 -54810030 - MER2 DNA MER2_type -123 222 31 3 1307 417 246 36 18 chr6 94707736 94707848 -54809189 - B3A SINE B2 -84 114 1 3 1307 485 313 64 84 chr6 94707956 94708207 -54808830 + B4 SINE B4 5 250 -42 3 1307 231 36 0 0 chr6 94708223 94708251 -54808786 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1307 630 49 0 0 chr6 94708251 94708332 -54808705 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1307 336 225 0 27 chr6 94708899 94708972 -54808065 + Tigger7 DNA MER2_type 2415 2485 -6 3 1307 249 329 34 14 chr6 94709020 94709168 -54807869 - MIR3 SINE MIR -25 183 33 3 1307 665 236 0 28 chr6 94709264 94709408 -54807629 + B1_Mur2 SINE Alu 1 140 -9 3 1307 444 62 0 0 chr6 94709408 94709472 -54807565 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1307 363 216 5 182 chr6 94709782 94709969 -54807068 + MLT1K LTR MaLR 401 554 -41 3 1307 185 320 134 16 chr6 94710003 94710130 -54806907 - MIRb SINE MIR -38 230 89 3 1307 484 223 72 19 chr6 94710224 94710370 -54806667 - B1F1 SINE Alu 0 147 4 3 1307 237 354 0 10 chr6 94710420 94710520 -54806517 + MER5A1 DNA MER1_type 33 131 -35 3 1307 435 38 0 0 chr6 94712432 94712485 -54804552 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1307 333 47 0 0 chr6 94712485 94712527 -54804510 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1307 654 221 43 7 chr6 94712544 94712685 -54804352 - B3A SINE B2 -48 150 5 3 1307 639 267 34 73 chr6 94713186 94713359 -54803678 + B3A SINE B2 1 175 -23 3 1307 360 0 0 0 chr6 94713359 94713399 -54803638 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1307 639 267 34 73 chr6 94713399 94713431 -54803606 + B3A SINE B2 176 198 0 3 1307 766 303 39 9 chr6 94713437 94713767 -54803270 - L1MC2 LINE L1 -125 6219 5880 3 1307 572 158 0 8 chr6 94713783 94713917 -54803120 + CT-rich Low_complexity Low_complexity 4 136 0 3 1307 465 274 65 22 chr6 94713948 94714086 -54802951 - RSINE1 SINE B4 -19 146 3 3 1307 513 47 0 0 chr6 94714087 94714151 -54802886 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 3 1307 898 237 38 14 chr6 94714158 94714368 -54802669 - B3 SINE B2 0 216 2 3 1307 374 177 17 26 chr6 94715035 94715151 -54801886 + CT-rich Low_complexity Low_complexity 1 115 0 3 1307 218 297 68 0 chr6 94715156 94715274 -54801763 - BC1_Mm scRNA scRNA -21 131 6 3 1307 565 220 25 0 chr6 94715426 94715544 -54801493 + B3A SINE B2 1 121 -77 3 1307 495 282 222 13 chr6 94715649 94715879 -54801158 - B4 SINE B4 -12 280 3 3 1307 1393 94 11 0 chr6 94716173 94716364 -54800673 - B2_Mm1t SINE B2 0 193 1 3 1307 404 0 0 38 chr6 94716373 94716426 -54800611 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 3 1307 1224 43 0 0 chr6 94716428 94716569 -54800468 - B1_Mm SINE Alu -6 141 1 3 1307 1308 107 16 5 chr6 94716570 94716758 -54800279 - B2_Mm2 SINE B2 -5 190 1 3 1307 241 198 20 30 chr6 94717243 94717342 -54799695 + CT-rich Low_complexity Low_complexity 1 98 0 3 1307 23 0 0 0 chr6 94717366 94717389 -54799648 + AT_rich Low_complexity Low_complexity 1 23 0 3 1307 654 223 20 0 chr6 94717404 94717552 -54799485 - ID_B1 SINE B4 -24 200 50 3 1307 194 0 0 37 chr6 94717762 94717789 -54799248 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 3 1307 1134 89 0 0 chr6 94717791 94717937 -54799100 - B1_Mm SINE Alu 0 147 2 3 1307 434 237 51 26 chr6 94718003 94718120 -54798917 + PB1D7 SINE Alu 1 120 0 3 1307 602 245 55 6 chr6 94718141 94718305 -54798732 + ID_B1 SINE B4 14 185 -39 3 1307 691 296 278 15 chr6 94718375 94718827 -54798210 + L1MB3 LINE L1 5451 6017 -166 3 1307 288 0 0 0 chr6 94718827 94718859 -54798178 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1307 691 314 92 9 chr6 94718859 94718999 -54798038 + L1MB3 LINE L1 6018 6172 -11 3 1307 902 245 34 5 chr6 94719419 94719628 -54797409 + ID_B1 SINE B4 1 215 -9 3 1307 270 0 0 0 chr6 94719630 94719660 -54797377 + (CAAAC)n Simple_repeat Simple_repeat 3 32 0 3 1307 920 306 24 0 chr6 94720535 94720783 -54796254 + B4A SINE B4 9 262 -30 3 1307 849 89 0 0 chr6 94720784 94720908 -54796129 + (CA)n Simple_repeat Simple_repeat 2 125 0 3 1307 746 92 130 0 chr6 94721233 94721364 -54795673 - URR1A DNA MER1_type 0 226 79 3 1307 198 0 0 0 chr6 94721717 94721739 -54795298 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 4 1307 228 224 0 0 chr6 94722148 94722215 -54794822 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1307 481 316 86 35 chr6 94722223 94722420 -54794617 - B4A SINE B4 -77 215 9 4 1307 192 77 0 0 chr6 94723927 94723953 -54793084 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 4 1307 239 227 0 0 chr6 94724861 94724905 -54792132 - ID_B1 SINE B4 -7 217 174 4 1307 230 241 86 0 chr6 94724905 94724919 -54792118 - PB1D7 SINE Alu -7 113 51 4 1307 766 164 11 73 chr6 94725005 94725138 -54791899 + B2_Mm2 SINE B2 29 154 -41 4 1307 243 0 0 0 chr6 94725138 94725165 -54791872 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1307 766 164 11 73 chr6 94725165 94725209 -54791828 + B2_Mm2 SINE B2 155 195 0 4 1307 272 254 14 137 chr6 94725269 94725355 -54791682 + L1ME2z LINE L1 6172 6253 -191 4 1307 705 219 7 20 chr6 94725355 94725504 -54791533 - B1_Mur2 SINE Alu -1 148 2 4 1307 272 254 14 137 chr6 94725504 94725563 -54791474 + L1ME2z LINE L1 6254 6299 -145 4 1307 311 211 57 0 chr6 94725750 94725873 -54791164 + (TA)n Simple_repeat Simple_repeat 2 131 0 4 1307 228 269 29 29 chr6 94725961 94726030 -54791007 - B3A SINE B2 -13 185 117 4 1307 617 302 99 40 chr6 94725982 94726166 -54790871 - B4 SINE B4 0 292 103 4 1307 803 155 224 0 chr6 94726166 94726340 -54790697 - B3 SINE B2 0 216 4 4 1307 617 302 99 40 chr6 94726340 94726428 -54790609 - B4 SINE B4 -190 102 4 4 1307 21 36 0 0 chr6 94726573 94726601 -54790436 + AT_rich Low_complexity Low_complexity 1 28 0 4 1307 256 279 137 101 chr6 94727168 94727395 -54789642 + MLT1E LTR MaLR 289 523 -130 4 1307 206 347 40 40 chr6 94727566 94727692 -54789345 + MIRb SINE MIR 71 196 -72 4 1307 253 327 106 26 chr6 94727742 94727893 -54789144 - MIRb SINE MIR -9 259 97 4 1307 3062 118 17 44 chr6 94728358 94728882 -54788155 - RLTR28 LTR ERVL -14 510 1 4 1307 207 0 0 0 chr6 94729276 94729299 -54787738 + (C)n Simple_repeat Simple_repeat 1 23 0 4 1307 614 260 115 0 chr6 94729300 94729492 -54787545 - ID_B1 SINE B4 -8 216 3 4 1307 26 0 0 0 chr6 94729500 94729526 -54787511 + AT_rich Low_complexity Low_complexity 1 26 0 4 1307 299 308 37 0 chr6 94729732 94729839 -54787198 + CT-rich Low_complexity Low_complexity 6 116 0 4 1307 251 258 198 8 chr6 94731309 94731430 -54785607 - L2a LINE L2 -8 3418 3275 4 1307 704 200 49 11 chr6 94731527 94731681 -54785356 - MTD LTR MaLR -2 417 193 4 1307 482 208 38 2 chr6 94731684 94731801 -54785236 - B1_Mur2 SINE Alu -22 127 1 4 1307 823 253 34 51 chr6 94731801 94732030 -54785007 - B4 SINE B4 -65 227 3 4 1307 247 292 0 14 chr6 94732115 94732188 -54784849 + CT-rich Low_complexity Low_complexity 3 74 0 4 1307 201 229 28 14 chr6 94732152 94732223 -54784814 + (TCTG)n Simple_repeat Simple_repeat 1 72 0 4 1307 209 30 0 57 chr6 94732241 94732276 -54784761 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 1307 340 191 14 14 chr6 94732316 94732454 -54784583 + (TCTCTG)n Simple_repeat Simple_repeat 2 139 0 4 1307 212 185 36 36 chr6 94732479 94732535 -54784502 + (TCTCTG)n Simple_repeat Simple_repeat 3 58 0 4 1307 413 97 14 0 chr6 94732535 94732607 -54784430 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1307 532 283 114 28 chr6 94732610 94732821 -54784216 - B4A SINE B4 -16 276 48 4 1307 395 19 19 0 chr6 94732889 94732941 -54784096 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1307 272 263 40 0 chr6 94733113 94733189 -54783848 - L1MD LINE L1 -2159 5836 5758 4 1307 597 311 44 100 chr6 94733233 94733257 -54783780 - B4 SINE B4 -2 290 270 4 1307 255 61 0 0 chr6 94733257 94733290 -54783747 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1307 597 311 44 100 chr6 94733290 94733515 -54783522 - B4 SINE B4 -23 269 55 4 1307 480 275 49 0 chr6 94734097 94734239 -54782798 + MIR SINE MIR 77 225 -37 4 1307 180 253 71 71 chr6 94734209 94734294 -54782743 + L3 LINE CR1 1037 1121 -3368 4 1307 580 298 177 4 chr6 94734526 94734752 -54782285 - B4A SINE B4 0 292 28 4 1307 620 225 23 23 chr6 94734958 94735090 -54781947 + B1F1 SINE Alu 9 140 -9 4 1307 363 207 72 12 chr6 94735432 94735515 -54781522 - PB1D10 SINE Alu -8 109 22 4 1307 561 197 41 8 chr6 94735590 94735713 -54781324 - URR1B DNA MER1_type 0 225 99 4 1307 348 328 167 19 chr6 94736138 94736396 -54780641 + MLT1H LTR MaLR 254 549 0 4 1307 339 288 62 31 chr6 94736439 94736568 -54780469 + L2a LINE L2 3293 3425 -1 4 1307 580 230 62 36 chr6 94736594 94736788 -54780249 + B3 SINE B2 1 199 -17 4 1307 568 238 41 27 chr6 94736922 94737069 -54779968 + B1F1 SINE Alu 1 149 0 4 1307 3119 83 2 0 chr6 94737420 94737819 -54779218 + MTB LTR MaLR 1 400 0 4 1307 441 0 0 0 chr6 94738508 94738557 -54778480 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1307 633 282 34 121 chr6 94738597 94738895 -54778142 - B4 SINE B4 -18 274 3 4 1307 260 292 81 81 chr6 94738901 94739050 -54777987 + LTR16E1 LTR ERVL 390 538 0 4 1307 372 278 47 40 chr6 94739053 94739203 -54777834 - MER103 DNA DNA -8 158 8 4 1307 183 125 61 30 chr6 94739408 94739441 -54777596 - L2 LINE L2 -3287 132 99 4 1307 824 229 33 22 chr6 94740263 94740446 -54776591 + ID_B1 SINE B4 12 196 -28 4 1307 360 311 13 51 chr6 94740510 94740666 -54776371 + MIR SINE MIR 63 212 -50 4 1307 343 267 46 28 chr6 94741546 94741654 -54775383 + B4A SINE B4 2 111 -181 4 1307 287 260 107 74 chr6 94741671 94741808 -54775229 + B4 SINE B4 78 292 0 4 1307 1755 156 101 8 chr6 94742147 94742258 -54774779 + ORR1B1 LTR MaLR 1 132 -262 4 1307 210 37 0 0 chr6 94742258 94742285 -54774752 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1307 1755 156 101 8 chr6 94742285 94742528 -54774509 + ORR1B1 LTR MaLR 133 387 -7 4 1307 1374 189 221 12 chr6 94742614 94742940 -54774097 - MTD LTR MaLR -8 411 18 4 1307 279 79 0 0 chr6 94743155 94743193 -54773844 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 4 1307 679 202 177 49 chr6 94743244 94743447 -54773590 - B4A SINE B4 -62 230 2 4 1307 349 286 11 0 chr6 94743658 94743749 -54773288 - MER81 DNA AcHobo -22 92 1 4 1307 645 344 55 23 chr6 94744317 94744614 -54772423 + Charlie4a DNA MER1_type 46 347 -161 4 1307 893 235 59 0 chr6 94744614 94744818 -54772219 + ID_B1 SINE B4 1 216 -8 4 1307 645 344 55 23 chr6 94744818 94744868 -54772169 + Charlie4a DNA MER1_type 348 403 -105 4 1307 631 250 29 0 chr6 94744883 94745010 -54772027 + B1_Mur2 SINE Alu 10 140 -9 4 1307 234 0 0 0 chr6 94745010 94745036 -54772001 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 1307 180 0 0 0 chr6 94745363 94745383 -54771654 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1307 522 276 40 50 chr6 94745531 94745733 -54771304 - MIRb SINE MIR -10 258 59 4 1307 306 0 0 0 chr6 94745774 94745808 -54771229 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 4 1307 770 320 65 19 chr6 94745820 94746081 -54770956 - B4 SINE B4 -18 274 2 4 1307 3393 137 96 34 chr6 94746252 94746901 -54770136 - RMER6C LTR ERVK -1 689 1 4 1307 1490 113 9 22 chr6 94746984 94747211 -54769826 + URR1A DNA MER1_type 2 225 -1 4 1307 746 190 21 0 chr6 94747355 94747497 -54769540 - B1_Mus1 SINE Alu -2 146 2 4 1307 1008 276 21 21 chr6 94747533 94747870 -54769167 + L1MA4 LINE L1 5594 5930 -370 4 1307 692 322 118 47 chr6 94748090 94748344 -54768693 + B4A SINE B4 9 280 -12 4 1307 309 26 0 0 chr6 94748350 94748388 -54768649 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1307 238 295 61 102 chr6 94748455 94748475 -54768562 - PB1D10 SINE Alu -2 115 22 4 1307 278 282 103 0 chr6 94748475 94748553 -54768484 - ID_B1 SINE B4 -36 188 103 4 1307 236 226 94 0 chr6 94749033 94749086 -54767951 - L2b LINE L2 -4 3371 3314 4 1307 338 234 12 58 chr6 94750236 94750322 -54766715 - ID4 SINE ID 0 83 2 4 1307 278 197 106 0 chr6 94750337 94750403 -54766634 - PB1D10 SINE Alu -11 106 34 4 1307 291 369 0 9 chr6 94750452 94750564 -54766473 - MIR SINE MIR -69 193 83 4 1307 211 72 23 23 chr6 94750747 94750790 -54766247 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1307 267 204 10 31 chr6 94750806 94750902 -54766135 + GA-rich Low_complexity Low_complexity 3 96 0 4 1307 296 95 0 60 chr6 94751656 94751723 -54765314 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 1307 871 265 79 11 chr6 94751815 94752082 -54764955 + B4 SINE B4 5 289 -3 4 1307 285 89 0 0 chr6 94752120 94752165 -54764872 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 4 1307 324 0 0 0 chr6 94752167 94752203 -54764834 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1307 272 261 18 53 chr6 94752651 94752821 -54764216 + (CAGGG)n Simple_repeat Simple_repeat 2 165 0 4 1307 287 293 13 0 chr6 94753128 94753203 -54763834 - ID4 SINE ID -3 80 5 4 1307 195 42 0 0 chr6 94753207 94753231 -54763806 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 4 1307 1019 268 30 11 chr6 94753294 94753558 -54763479 + B4A SINE B4 1 269 -23 4 1307 342 0 0 0 chr6 94753558 94753596 -54763441 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1307 612 0 0 0 chr6 94754044 94754112 -54762925 + (TCCC)n Simple_repeat Simple_repeat 4 71 0 4 1307 417 169 143 12 chr6 94754121 94754205 -54762832 - PB1D10 SINE Alu -17 100 6 4 1307 214 217 0 61 chr6 94754168 94754208 -54762829 - B4A SINE B4 -165 127 88 4 1307 459 0 0 0 chr6 94754208 94754259 -54762778 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 4 1307 547 301 15 7 chr6 94754260 94754397 -54762640 - ID_B1 SINE B4 -5 219 82 4 1307 631 247 0 67 chr6 94754419 94754584 -54762453 - RSINE1 SINE B4 -8 157 4 4 1307 24 0 0 0 chr6 94755350 94755374 -54761663 + AT_rich Low_complexity Low_complexity 1 24 0 4 1307 397 272 57 50 chr6 94755378 94755537 -54761500 - RSINE1 SINE B4 -2 163 4 4 1307 254 323 45 15 chr6 94756196 94756328 -54760709 + MIRb SINE MIR 24 159 -109 5 1307 593 322 131 55 chr6 94757208 94757718 -54759319 + MLT1F2 LTR MaLR 10 558 -2 5 1307 1083 250 9 5 chr6 94757873 94758090 -54758947 - ID_B1 SINE B4 0 224 7 5 1307 3686 186 166 8 chr6 94759323 94759751 -54757286 + Lx7 LINE L1 4844 5332 -548 5 1307 1167 144 37 0 chr6 94759751 94759938 -54757099 + B2_Mm2 SINE B2 2 195 0 5 1307 3686 186 166 8 chr6 94759938 94760326 -54756711 + Lx7 LINE L1 5333 5797 -83 5 1307 1154 119 17 6 chr6 94760326 94760475 -54756562 + B2_Mm2 SINE B2 5 153 -42 5 1307 410 79 0 16 chr6 94760475 94760539 -54756498 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1307 1154 119 17 6 chr6 94760539 94760567 -54756470 + B2_Mm2 SINE B2 154 184 -11 5 1307 3686 208 56 15 chr6 94760567 94761155 -54755882 + Lx7 LINE L1 5798 6407 -1289 5 1307 1025 233 82 8 chr6 94761165 94761420 -54755617 + Lx7 LINE L1 7134 7407 -289 5 1307 357 345 13 20 chr6 94761844 94761995 -54755042 + L2a LINE L2 3246 3395 -31 5 1307 654 91 0 0 chr6 94762303 94762402 -54754635 + (TG)n Simple_repeat Simple_repeat 1 99 0 5 1307 342 0 0 0 chr6 94762402 94762439 -54754598 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1307 729 116 98 0 chr6 94762597 94762709 -54754328 - B1_Mus2 SINE Alu 0 147 25 5 1307 741 194 21 7 chr6 94763084 94763224 -54753813 - B1_Mur3 SINE Alu -7 142 1 5 1307 216 269 115 0 chr6 94763341 94763419 -54753618 - PB1D7 SINE Alu -1 119 33 5 1307 345 232 0 0 chr6 94763487 94763582 -54753455 + CT-rich Low_complexity Low_complexity 4 98 0 5 1307 1238 231 23 8 chr6 94763643 94763905 -54753132 - Charlie2b DNA MER1_type -741 2041 1776 5 1307 476 286 68 68 chr6 94763876 94764067 -54752970 - Charlie2b DNA MER1_type -2435 347 157 5 1307 449 293 27 89 chr6 94764241 94764321 -54752716 + B1F2 SINE Alu 7 73 -76 5 1307 1145 62 7 14 chr6 94764321 94764468 -54752569 - B1_Mm SINE Alu 0 147 2 5 1307 449 293 27 89 chr6 94764468 94764533 -54752504 + B1F2 SINE Alu 74 142 -7 5 1307 449 259 37 91 chr6 94764550 94764737 -54752300 + L1MC4 LINE L1 7182 7358 -684 5 1308 450 94 0 0 chr6 94765332 94765396 -54751641 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1308 294 330 30 0 chr6 94765491 94765591 -54751446 + PB1D9 SINE Alu 10 112 -8 5 1308 204 67 0 0 chr6 94765596 94765626 -54751411 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 5 1308 595 267 47 116 chr6 94765760 94765993 -54751044 - ID_B1 SINE B4 -7 217 1 5 1308 202 286 54 0 chr6 94766407 94766463 -54750574 + MIRm SINE MIR 218 276 0 5 1308 566 157 8 0 chr6 94766552 94766673 -54750364 + (TG)n Simple_repeat Simple_repeat 2 123 0 5 1308 351 0 0 0 chr6 94766673 94766712 -54750325 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1308 319 319 11 11 chr6 94766721 94766813 -54750224 + Tigger15a DNA TcMar 624 715 0 5 1308 905 188 3 24 chr6 94767514 94767844 -54749193 + CT-rich Low_complexity Low_complexity 1 322 0 5 1308 664 283 135 13 chr6 94767890 94768119 -54748918 - B4A SINE B4 -3 289 33 5 1308 512 238 164 11 chr6 94769207 94769390 -54747647 + ID_B1 SINE B4 2 212 -12 5 1308 301 301 46 65 chr6 94769882 94770035 -54747002 + MTEb LTR MaLR 230 379 0 5 1308 259 323 115 88 chr6 94771908 94772020 -54745017 + ID_B1 SINE B4 2 224 0 5 1308 349 235 9 67 chr6 94772020 94772125 -54744912 + PB1D10 SINE Alu 17 115 -2 5 1308 441 0 0 0 chr6 94772273 94772322 -54744715 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1308 608 299 14 0 chr6 94772331 94772475 -54744562 - RSINE1 SINE B4 -17 148 3 5 1308 388 276 38 9 chr6 94772610 94772716 -54744321 - MER63B DNA AcHobo -17 419 311 5 1308 237 339 85 8 chr6 94772862 94773109 -54743928 + L1M5 LINE L1 2857 3122 -3024 5 1308 276 100 0 0 chr6 94773800 94773840 -54743197 + (TCC)n Simple_repeat Simple_repeat 3 42 0 5 1308 258 314 22 132 chr6 94773879 94774015 -54743022 - MLT1H1 LTR MaLR -434 121 1 5 1308 670 297 51 33 chr6 94774015 94774586 -54742451 + L1M5 LINE L1 3462 4042 -2104 5 1308 2315 44 0 0 chr6 94774848 94775121 -54741916 - L1Md_A LINE L1 -1 6581 6309 5 1308 346 250 101 11 chr6 94775357 94775446 -54741591 + PB1D10 SINE Alu 20 116 -1 5 1308 638 290 24 29 chr6 94775515 94775699 -54741338 - ID_B1 SINE B4 -39 253 80 5 1308 362 242 46 81 chr6 94775929 94776160 -54740877 + L1M5 LINE L1 4477 4702 -1444 5 1308 601 221 123 39 chr6 94776210 94776389 -54740648 + MTD LTR MaLR 3 196 -223 5 1308 363 281 41 75 chr6 94776381 94776527 -54740510 - Charlie4a DNA MER1_type -227 281 141 5 1308 867 90 0 0 chr6 94776621 94776743 -54740294 + (TTCC)n Simple_repeat Simple_repeat 2 123 0 5 1308 604 278 171 25 chr6 94776963 94777203 -54739834 - B4A SINE B4 -4 288 14 5 1308 432 278 21 0 chr6 94777210 94777307 -54739730 - RSINE1 SINE B4 0 165 67 5 1308 267 229 0 0 chr6 94777336 94777384 -54739653 - MTEb LTR MaLR -8 371 324 5 1308 630 135 14 7 chr6 94777486 94777628 -54739409 + (TG)n Simple_repeat Simple_repeat 1 143 0 5 1308 227 268 28 99 chr6 94777740 94777881 -54739156 - MTEb LTR MaLR -243 131 1 5 1308 209 205 0 0 chr6 94778624 94778663 -54738374 + CT-rich Low_complexity Low_complexity 2 40 0 5 1308 269 304 121 21 chr6 94779682 94779823 -54737214 + MER20 DNA MER1_type 6 160 -59 5 1308 427 236 0 41 chr6 94779913 94780010 -54737027 - PB1D10 SINE Alu -5 112 20 5 1308 288 211 28 14 chr6 94780308 94780380 -54736657 - B4A SINE B4 -16 276 204 5 1308 182 37 37 0 chr6 94780452 94780479 -54736558 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 5 1308 1080 88 0 26 chr6 94780479 94780630 -54736407 - B1_Mus1 SINE Alu 0 148 2 5 1308 322 313 0 0 chr6 94780635 94780718 -54736319 - B4 SINE B4 -207 85 3 5 1308 477 250 156 0 chr6 94781764 94781944 -54735093 + ID_B1 SINE B4 1 208 -16 5 1308 369 0 0 0 chr6 94781966 94782007 -54735030 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1308 831 10 0 0 chr6 94782007 94782102 -54734935 + (GA)n Simple_repeat Simple_repeat 1 96 0 5 1308 387 0 0 0 chr6 94782258 94782301 -54734736 + (TAAAAA)n Simple_repeat Simple_repeat 1 43 0 5 1308 652 146 0 21 chr6 94782605 94782745 -54734292 + MER121 Unknown Unknown 120 256 -156 5 1308 598 254 27 168 chr6 94783311 94783429 -54733608 + B4 SINE B4 2 220 -71 5 1308 710 187 15 22 chr6 94783429 94783566 -54733471 + B1_Mur4 SINE Alu 9 144 -6 5 1308 443 234 199 23 chr6 94783566 94783697 -54733340 + B4 SINE B4 66 219 -73 5 1308 288 202 24 37 chr6 94784024 94784106 -54732931 + MLT1A1 LTR MaLR 321 401 -7 5 1308 363 353 78 37 chr6 94785215 94785509 -54731528 + ORR1E LTR MaLR 10 315 -44 5 1308 200 121 30 0 chr6 94785775 94785808 -54731229 + GA-rich Low_complexity Low_complexity 2 35 0 5 1308 24 0 0 0 chr6 94786203 94786227 -54730810 + AT_rich Low_complexity Low_complexity 1 24 0 5 1308 595 255 84 69 chr6 94786498 94786792 -54730245 - B4A SINE B4 -1 291 1 5 1308 464 289 139 49 chr6 94787529 94787816 -54729221 - MLT1A0 LTR MaLR -50 315 3 5 1308 478 308 108 5 chr6 94787921 94788133 -54728904 + Charlie1b DNA MER1_type 72 305 -218 5 1308 297 344 60 16 chr6 94788180 94788363 -54728674 - MLT1D LTR MaLR -281 224 34 5 1308 421 265 53 20 chr6 94788775 94788925 -54728112 - MER103 DNA DNA -9 157 3 5 1308 272 120 20 0 chr6 94789073 94789123 -54727914 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1308 21 0 0 0 chr6 94789184 94789205 -54727832 + AT_rich Low_complexity Low_complexity 1 21 0 5 1308 516 214 16 64 chr6 94789883 94790008 -54727029 + ID_B1 SINE B4 5 123 -101 5 1308 597 28 0 0 chr6 94790080 94790151 -54726886 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1308 1107 44 0 0 chr6 94790151 94790287 -54726750 + (TTTCC)n Simple_repeat Simple_repeat 3 139 0 5 1308 1580 0 0 6 chr6 94790298 94790479 -54726558 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 5 1308 457 92 26 0 chr6 94790480 94790556 -54726481 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 5 1308 369 138 0 0 chr6 94790606 94790686 -54726351 + (T)n Simple_repeat Simple_repeat 1 80 0 5 1308 535 215 124 12 chr6 94790686 94790943 -54726094 + MTD LTR MaLR 12 404 -15 5 1308 1050 122 17 0 chr6 94791046 94791218 -54725819 - ORR1B2 LTR MaLR -8 359 185 5 1308 248 339 7 88 chr6 94791210 94791346 -54725691 + MLT1A0 LTR MaLR 241 365 0 5 1308 283 262 49 24 chr6 94791371 94791453 -54725584 + PB1D10 SINE Alu 1 84 -33 5 1308 216 250 162 0 chr6 94792192 94792260 -54724777 + PB1D10 SINE Alu 34 112 -5 5 1308 338 267 13 0 chr6 94792340 94792415 -54724622 + ID4_ SINE ID 5 80 -3 5 1308 1111 230 43 14 chr6 94792448 94792726 -54724311 + B4A SINE B4 3 288 -4 5 1308 321 125 0 0 chr6 94794182 94794238 -54722799 + (TCCC)n Simple_repeat Simple_repeat 2 57 0 5 1308 687 251 93 10 chr6 94794241 94794434 -54722603 - ID_B1 SINE B4 -14 210 2 5 1308 748 280 58 17 chr6 94794675 94794966 -54722071 + Lx8 LINE L1 7161 7463 -10 5 1308 1113 238 121 0 chr6 94797075 94797357 -54719680 + MTE2b LTR MaLR 53 368 -11 5 1308 565 276 24 0 chr6 94797817 94797944 -54719093 - B1F SINE Alu -19 130 1 5 1308 230 290 29 0 chr6 94799020 94799089 -54717948 - MIRc SINE MIR -121 147 77 5 1308 294 29 0 0 chr6 94799904 94799939 -54717098 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1308 570 29 0 0 chr6 94799967 94800035 -54717002 + (TTCTC)n Simple_repeat Simple_repeat 1 68 0 5 1308 1023 152 0 0 chr6 94800035 94800213 -54716824 + CT-rich Low_complexity Low_complexity 1 178 0 5 1308 207 0 0 0 chr6 94800621 94800644 -54716393 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 5 1308 628 340 29 10 chr6 94801887 94802199 -54714838 - Charlie20a DNA Charlie -37 770 453 5 1308 263 235 15 0 chr6 94802492 94802560 -54714477 - L1MD2 LINE L1 -7 6352 6284 5 1308 312 48 0 0 chr6 94802574 94802616 -54714421 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1308 796 249 110 20 chr6 94802633 94802879 -54714158 - B4A SINE B4 -20 272 5 5 1308 363 287 176 29 chr6 94802883 94803127 -54713910 - L1MD1 LINE L1 -73 6567 6288 6 1308 664 305 40 10 chr6 94803125 94803358 -54713679 - L1MD1 LINE L1 -769 5988 5747 6 1308 765 0 0 0 chr6 94803358 94803443 -54713594 + (GAA)n Simple_repeat Simple_repeat 3 87 0 6 1308 664 305 40 10 chr6 94803443 94803507 -54713530 - L1MD1 LINE L1 -1011 5746 5683 6 1308 399 41 0 0 chr6 94803516 94803565 -54713472 + (TTC)n Simple_repeat Simple_repeat 1 49 0 6 1308 1493 253 90 28 chr6 94803566 94804203 -54712834 - L1MD1 LINE L1 -881 5663 4993 6 1308 1189 225 8 19 chr6 94804456 94804714 -54712323 - MTC LTR MaLR -134 287 33 6 1308 714 292 47 47 chr6 94804721 94805019 -54712018 - ORR1E LTR MaLR -61 298 1 6 1308 1021 298 99 114 chr6 94805026 94807031 -54710006 - L1MD1 LINE L1 -1738 4806 2807 6 1308 1128 271 166 20 chr6 94807068 94807522 -54709515 - L1MD1 LINE L1 -4643 1997 1477 6 1308 255 61 0 0 chr6 94807522 94807555 -54709482 + (TAA)n Simple_repeat Simple_repeat 3 35 0 6 1308 1128 271 166 20 chr6 94807555 94807755 -54709282 - L1MD1 LINE L1 -5164 1476 1247 6 1308 257 182 0 0 chr6 94807898 94807942 -54709095 - B3A SINE B2 -82 116 73 6 1308 685 322 59 97 chr6 94808011 94808434 -54708603 - L1MD1 LINE L1 -5484 1063 657 6 1308 459 365 46 0 chr6 94808663 94808926 -54708111 - L1MD1 LINE L1 -6220 327 53 6 1308 639 216 67 0 chr6 94808973 94809107 -54707930 - ID_B1 SINE B4 0 224 82 6 1308 288 0 0 0 chr6 94809737 94809769 -54707268 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1308 563 262 44 0 chr6 94809777 94809937 -54707100 - B4A SINE B4 -4 288 122 6 1308 917 282 18 23 chr6 94809951 94810272 -54706765 + Lx7 LINE L1 5590 5927 -370 6 1308 43 20 0 0 chr6 94810956 94811006 -54706031 + AT_rich Low_complexity Low_complexity 1 50 0 6 1308 491 241 5 28 chr6 94811006 94811134 -54705903 - B1_Mur1 SINE Alu -9 140 13 6 1308 239 216 216 0 chr6 94811785 94811859 -54705178 + MER47B DNA MER2_type 303 392 -26 6 1308 2232 187 61 32 chr6 94812639 94813165 -54703872 - RLTR20A LTR ERVK 0 541 1 6 1308 523 263 93 22 chr6 94813324 94813592 -54703445 + MER33 DNA MER1_type 1 287 -37 6 1308 843 285 53 11 chr6 94813597 94813860 -54703177 + B4 SINE B4 1 274 -18 6 1308 248 0 31 0 chr6 94814396 94814428 -54702609 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1308 40 0 0 0 chr6 94814936 94814976 -54702061 + AT_rich Low_complexity Low_complexity 1 40 0 6 1308 620 215 39 94 chr6 94815086 94815266 -54701771 - B4 SINE B4 -6 286 117 6 1308 473 309 7 0 chr6 94815284 94815420 -54701617 - B1_Mur2 SINE Alu 0 149 13 6 1308 278 339 22 66 chr6 94815420 94815466 -54701571 - ID_B1 SINE B4 0 223 50 6 1308 419 225 86 29 chr6 94816494 94816599 -54700438 + PB1D7 SINE Alu 3 113 -7 6 1308 254 346 110 0 chr6 94816919 94817055 -54699982 + LTR33 LTR ERVL 33 183 -332 6 1308 463 56 28 0 chr6 94817526 94817597 -54699440 + (TA)n Simple_repeat Simple_repeat 2 74 0 6 1308 2359 166 29 0 chr6 94818597 94818983 -54698054 + Lx9 LINE L1 7069 7465 -179 6 1308 333 0 0 0 chr6 94818986 94819023 -54698014 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1308 394 120 0 26 chr6 94819063 94819140 -54697897 + (GAAAA)n Simple_repeat Simple_repeat 2 76 0 6 1308 1461 192 22 13 chr6 94819140 94819456 -54697581 - ORR1D1 LTR MaLR -55 319 1 6 1308 23 0 0 0 chr6 94819658 94819681 -54697356 + AT_rich Low_complexity Low_complexity 1 23 0 6 1308 1199 68 0 0 chr6 94819696 94819843 -54697194 - B1_Mm SINE Alu 0 147 1 6 1308 210 344 10 40 chr6 94819847 94819947 -54697090 - PB1D7 SINE Alu 0 120 24 6 1308 980 241 107 8 chr6 94821231 94821494 -54695543 - B4 SINE B4 0 292 4 6 1308 793 288 18 5 chr6 94821522 94821742 -54695295 + MER58A DNA MER1_type 1 223 -1 6 1308 446 292 47 103 chr6 94822369 94822583 -54694454 - B4A SINE B4 -89 203 2 6 1308 387 0 0 0 chr6 94823262 94823305 -54693732 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1308 237 65 0 0 chr6 94823305 94823336 -54693701 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1308 454 351 69 38 chr6 94823659 94823920 -54693117 - Tigger5 DNA MER2_type 0 2406 2138 6 1308 443 145 12 0 chr6 94825802 94825885 -54691152 + GA-rich Low_complexity Low_complexity 2 85 0 6 1308 468 0 0 0 chr6 94826363 94826415 -54690622 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1308 565 336 39 0 chr6 94826959 94827188 -54689849 - MER2 DNA MER2_type -22 323 86 6 1308 236 296 0 40 chr6 94827309 94827383 -54689654 - MER2 DNA MER2_type -270 75 5 6 1308 414 0 0 0 chr6 94828065 94828111 -54688926 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1308 1084 231 14 0 chr6 94829308 94829524 -54687513 + ID_B1 SINE B4 2 220 -4 6 1308 308 252 204 7 chr6 94829581 94829733 -54687304 + L2a LINE L2 3245 3426 0 6 1308 662 244 16 26 chr6 94829791 94829988 -54687049 - B3A SINE B2 -13 203 7 6 1308 1276 41 0 0 chr6 94830464 94830611 -54686426 - B1_Mus2 SINE Alu 0 147 1 6 1308 537 303 42 6 chr6 94830793 94830959 -54686078 + MER58A DNA MER1_type 1 172 -52 6 1308 260 231 13 0 chr6 94832552 94832630 -54684407 + GA-rich Low_complexity Low_complexity 3 81 0 6 1308 939 136 25 6 chr6 94832783 94832946 -54684091 - Lx9 LINE L1 -555 7089 6924 6 1308 276 268 56 16 chr6 94833099 94833224 -54683813 - L1MA7 LINE L1 -105 6186 6057 6 1308 369 173 48 24 chr6 94833368 94833451 -54683586 - PB1D10 SINE Alu -31 86 2 6 1308 284 215 62 0 chr6 94834188 94834253 -54682784 + L1MC1 LINE L1 6109 6177 -156 6 1308 276 251 85 33 chr6 94834345 94834501 -54682536 - L1M5 LINE L1 -296 5828 5660 6 1308 692 178 242 11 chr6 94834708 94834890 -54682147 + URR1B DNA MER1_type 2 225 0 6 1308 413 264 5 1 chr6 94835112 94835227 -54681810 - PB1D10 SINE Alu -2 118 1 6 1308 281 267 66 9 chr6 94835724 94835830 -54681207 - ORR1E LTR MaLR -5 354 243 6 1308 21 0 0 0 chr6 94836336 94836357 -54680680 + AT_rich Low_complexity Low_complexity 1 21 0 6 1308 970 289 17 60 chr6 94836761 94837059 -54679978 + B4 SINE B4 3 287 -5 6 1308 1799 201 57 8 chr6 94837687 94838073 -54678964 - MTD LTR MaLR -14 405 1 6 1308 288 0 0 0 chr6 94841049 94841081 -54675956 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1308 261 180 0 0 chr6 94841711 94841761 -54675276 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1308 452 309 37 82 chr6 94841761 94841939 -54675098 - MER2 DNA MER2_type -3 342 165 6 1308 1051 102 0 20 chr6 94841939 94842089 -54674948 + B1_Mus2 SINE Alu 1 147 0 6 1308 452 309 37 82 chr6 94842089 94842178 -54674859 - MER2 DNA MER2_type -181 164 87 6 1308 746 299 112 30 chr6 94842231 94842500 -54674537 - B4 SINE B4 -1 291 1 6 1308 457 331 6 0 chr6 94843117 94843343 -54673694 + (CA)n Simple_repeat Simple_repeat 1 227 0 6 1308 754 226 58 5 chr6 94843350 94843541 -54673496 - Tigger5 DNA MER2_type -3 2403 2203 6 1308 333 0 0 0 chr6 94843903 94843940 -54673097 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1308 513 0 0 0 chr6 94843940 94843996 -54673041 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1308 324 120 0 0 chr6 94844262 94844312 -54672725 + (T)n Simple_repeat Simple_repeat 1 50 0 6 1308 2467 89 6 0 chr6 94845622 94845949 -54671088 - ORR1A4 LTR MaLR 0 329 1 6 1308 507 285 80 0 chr6 94846259 94846410 -54670627 + B4 SINE B4 1 163 -129 6 1308 1389 76 0 0 chr6 94846874 94847372 -54669665 + (TG)n Simple_repeat Simple_repeat 1 498 0 6 1308 472 316 0 7 chr6 94847822 94847959 -54669078 - B1F1 SINE Alu 0 149 14 6 1308 860 240 42 19 chr6 94848098 94848310 -54668727 - ID_B1 SINE B4 -7 217 1 6 1308 402 294 86 53 chr6 94850201 94850352 -54666685 - MER3 DNA MER1_type -53 156 1 6 1308 306 194 0 0 chr6 94851356 94851428 -54665609 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1308 699 278 137 28 chr6 94852551 94852806 -54664231 - B4A SINE B4 -9 283 1 6 1308 1263 79 16 38 chr6 94853166 94853350 -54663687 - B2_Mm2 SINE B2 -14 181 2 6 1308 243 182 127 0 chr6 94853557 94853612 -54663425 - L1MC LINE L1 -2110 5772 5711 6 1308 424 331 0 79 chr6 94853778 94853955 -54663082 + RSINE1 SINE B4 3 165 0 6 1308 2086 145 8 11 chr6 94854756 94855111 -54661926 - ORR1B2 LTR MaLR -13 354 1 6 1308 861 290 11 40 chr6 94855202 94855467 -54661570 + B4A SINE B4 35 290 -2 6 1308 396 0 0 0 chr6 94855477 94855521 -54661516 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1308 546 291 92 27 chr6 94855538 94855799 -54661238 - B4 SINE B4 -14 278 1 6 1308 236 236 108 43 chr6 94855889 94855982 -54661055 + ORR1E LTR MaLR 8 106 -253 6 1308 348 199 282 7 chr6 94856914 94857056 -54659981 - MER20 DNA MER1_type -3 216 36 6 1308 482 352 0 0 chr6 94857148 94857290 -54659747 - RSINE1 SINE B4 0 165 24 6 1308 1633 230 47 42 chr6 94858874 94859282 -54657755 - MTD LTR MaLR -8 411 2 6 1308 990 238 105 4 chr6 94859345 94859602 -54657435 + B4 SINE B4 10 292 0 6 1308 2014 117 3 3 chr6 94860086 94860404 -54656633 + ORR1A3 LTR MaLR 1 318 -8 6 1308 543 264 141 16 chr6 94860406 94860598 -54656439 - L1MA5A LINE L1 -419 5878 5663 6 1308 547 231 186 6 chr6 94860740 94860923 -54656114 + B4A SINE B4 12 227 -65 6 1308 27 29 0 0 chr6 94861040 94861074 -54655963 + AT_rich Low_complexity Low_complexity 1 34 0 6 1308 831 185 185 0 chr6 94862389 94862578 -54654459 - URR1A DNA MER1_type 0 226 3 6 1308 320 313 148 10 chr6 94863119 94863322 -54653715 + Tigger5 DNA MER2_type 2176 2406 0 6 1308 300 253 40 0 chr6 94863675 94863750 -54653287 - MTEa LTR MaLR -191 188 111 6 1308 756 61 0 0 chr6 94863766 94863864 -54653173 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 6 1308 623 295 65 11 chr6 94863869 94864054 -54652983 - B4A SINE B4 -87 205 11 6 1308 342 0 0 0 chr6 94864418 94864456 -54652581 + (CAA)n Simple_repeat Simple_repeat 3 40 0 6 1308 207 0 0 0 chr6 94864456 94864479 -54652558 + (CTA)n Simple_repeat Simple_repeat 1 23 0 6 1308 21 0 0 0 chr6 94864479 94864500 -54652537 + AT_rich Low_complexity Low_complexity 1 21 0 7 1308 1138 81 0 0 chr6 94864802 94864950 -54652087 - B1_Mus1 SINE Alu 0 148 1 7 1308 600 234 0 21 chr6 94865119 94865263 -54651774 + MTEa LTR MaLR 239 379 0 7 1308 243 88 0 0 chr6 94865377 94865411 -54651626 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1308 770 110 55 8 chr6 94865427 94865555 -54651482 + B1_Mus1 SINE Alu 6 139 -9 7 1308 648 0 0 0 chr6 94865555 94865627 -54651410 + (CAAAC)n Simple_repeat Simple_repeat 2 73 0 7 1308 210 158 0 0 chr6 94865875 94865913 -54651124 + T-rich Low_complexity Low_complexity 1 38 0 7 1308 573 258 66 17 chr6 94867052 94867233 -54649804 + MER20 DNA MER1_type 25 214 -5 7 1308 213 108 0 0 chr6 94867370 94867407 -54649630 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1308 694 268 127 28 chr6 94867424 94867677 -54649360 - B4 SINE B4 -14 278 1 7 1308 785 87 21 28 chr6 94868132 94868274 -54648763 + (GAAAA)n Simple_repeat Simple_repeat 2 142 0 7 1308 271 0 51 0 chr6 94868311 94868350 -54648687 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1308 1275 217 118 21 chr6 94868350 94868722 -54648315 + MTD LTR MaLR 12 419 0 7 1308 683 81 10 0 chr6 94870034 94870133 -54646904 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 7 1308 437 82 14 14 chr6 94870134 94870208 -54646829 - B1_Mm SINE Alu -3 144 71 7 1308 1628 257 25 7 chr6 94870379 94870786 -54646251 + MTD LTR MaLR 6 419 0 7 1308 233 216 80 13 chr6 94871242 94871317 -54645720 + MER113 DNA MER1_type 303 382 -139 7 1308 252 384 75 0 chr6 94872234 94872393 -54644644 + MIRb SINE MIR 55 225 -43 7 1308 574 287 80 15 chr6 94872619 94872917 -54644120 + MLT2D LTR ERVL 35 357 -40 7 1308 335 212 13 32 chr6 94872917 94873073 -54643964 + (TA)n Simple_repeat Simple_repeat 1 153 0 7 1308 277 359 72 48 chr6 94873122 94873330 -54643707 + MER20 DNA MER1_type 1 213 -6 7 1308 498 257 9 0 chr6 94873724 94873833 -54643204 - PB1D7 SINE Alu -7 113 4 7 1308 336 278 77 31 chr6 94873836 94873966 -54643071 + MLT1A0 LTR MaLR 221 356 -9 7 1308 323 274 9 45 chr6 94874161 94874272 -54642765 + PB1D10 SINE Alu 6 112 -5 7 1308 198 245 19 0 chr6 94874839 94874892 -54642145 + MIR SINE MIR 83 136 -72 7 1308 330 67 0 0 chr6 94875899 94875944 -54641093 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1308 396 246 183 17 chr6 94875957 94876077 -54640960 - B3A SINE B2 -56 142 1 7 1308 470 238 47 16 chr6 94876146 94876274 -54640763 + ORR1D2 LTR MaLR 39 170 -200 7 1308 201 29 88 0 chr6 94876538 94876572 -54640465 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 7 1308 400 70 0 0 chr6 94876572 94876629 -54640408 - B1_Mur4 SINE Alu 0 150 94 7 1308 526 147 26 35 chr6 94876631 94876744 -54640293 - B1_Mur4 SINE Alu 0 150 39 7 1308 506 236 130 14 chr6 94876722 94876891 -54640146 + ORR1D2 LTR MaLR 177 417 -2 7 1308 437 122 14 0 chr6 94876998 94877072 -54639965 + (TG)n Simple_repeat Simple_repeat 2 76 0 7 1308 871 145 0 0 chr6 94877358 94877496 -54639541 + B1_Mur3 SINE Alu 12 149 0 7 1308 782 94 0 8 chr6 94877503 94877621 -54639416 + (GGAA)n Simple_repeat Simple_repeat 3 119 0 7 1308 183 129 0 0 chr6 94878043 94878074 -54638963 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 7 1308 239 319 19 26 chr6 94878755 94878872 -54638165 - ID4 SINE ID -26 126 6 7 1308 268 295 188 0 chr6 94879226 94879338 -54637699 + L2a LINE L2 2995 3127 -299 7 1308 710 183 0 37 chr6 94879371 94879558 -54637479 + T-rich Low_complexity Low_complexity 1 180 0 7 1308 4683 64 5 8 chr6 94879560 94880156 -54636881 + L1Md_F2 LINE L1 5989 6582 0 7 1308 588 247 137 42 chr6 94880170 94880342 -54636695 - B3 SINE B2 0 216 26 7 1308 1536 158 326 15 chr6 94880342 94880682 -54636355 + RLTR41 LTR ERV1 1 446 0 7 1308 588 247 137 42 chr6 94880682 94880699 -54636338 - B3 SINE B2 -191 25 9 7 1308 496 302 71 17 chr6 94880836 94881075 -54635962 + L1ME2z LINE L1 5959 6210 -234 7 1308 201 235 118 0 chr6 94881442 94881510 -54635527 + L2 LINE L2 544 619 -2800 7 1308 305 244 21 62 chr6 94881806 94881902 -54635135 + B4A SINE B4 117 208 -84 7 1308 249 358 161 24 chr6 94882275 94882698 -54634339 + L2 LINE L2 2363 2843 -576 7 1308 231 36 0 0 chr6 94882960 94882988 -54634049 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 7 1308 412 256 111 0 chr6 94883064 94883236 -54633801 + Charlie4a DNA MER1_type 77 267 -241 7 1308 1074 159 76 9 chr6 94883883 94884093 -54632944 + URR1A DNA MER1_type 3 226 0 7 1308 229 106 0 60 chr6 94884247 94884297 -54632740 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 1308 1044 96 0 19 chr6 94884400 94884560 -54632477 + B2_Mm2 SINE B2 2 158 -37 7 1308 768 52 0 0 chr6 94884561 94884658 -54632379 + (GA)n Simple_repeat Simple_repeat 2 98 0 7 1308 213 237 0 0 chr6 94885245 94885283 -54631754 - MIRm SINE MIR -145 131 94 7 1308 422 301 140 71 chr6 94885396 94885775 -54631262 - MER113 DNA MER1_type -114 407 3 7 1308 355 372 98 29 chr6 94885951 94886228 -54630809 + LTR16C LTR ERVL 162 457 -32 7 1308 504 48 0 0 chr6 94886283 94886346 -54630691 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 7 1308 909 244 221 0 chr6 94886644 94886950 -54630087 - MTEb LTR MaLR 0 379 6 7 1308 664 272 72 23 chr6 94887570 94887833 -54629204 - L1M5 LINE L1 -560 5680 5405 7 1308 296 303 21 57 chr6 94887951 94887965 -54629072 - ID_B1 SINE B4 0 224 213 7 1308 195 0 0 79 chr6 94887965 94888003 -54629034 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 7 1308 296 303 21 57 chr6 94888003 94888128 -54628909 - ID_B1 SINE B4 -12 212 90 7 1308 880 244 10 10 chr6 94888295 94888490 -54628547 - B3 SINE B2 -17 199 5 7 1308 380 268 51 101 chr6 94888826 94888984 -54628053 - B4A SINE B4 -142 150 1 7 1308 253 363 150 35 chr6 94889827 94890167 -54626870 + LTR33 LTR ERVL 1 379 -136 7 1308 549 0 0 0 chr6 94890985 94891046 -54625991 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 1308 792 32 0 0 chr6 94891350 94891445 -54625592 + (GGGAGA)n Simple_repeat Simple_repeat 6 100 0 7 1308 945 168 0 0 chr6 94891921 94892070 -54624967 + B1_Mur4 SINE Alu 2 150 0 7 1308 239 299 25 38 chr6 94892233 94892313 -54624724 - MLT1G1 LTR MaLR -62 618 540 7 1308 235 328 0 0 chr6 94892310 94892368 -54624669 - MLT1G1 LTR MaLR -145 434 377 7 1308 639 286 63 81 chr6 94892401 94892489 -54624548 - MLT1G1 LTR MaLR -297 282 198 7 1308 360 0 0 0 chr6 94892489 94892529 -54624508 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1308 639 286 63 81 chr6 94892529 94892725 -54624312 - MLT1G1 LTR MaLR -382 197 3 7 1308 206 283 0 0 chr6 94893232 94893278 -54623759 + GA-rich Low_complexity Low_complexity 4 49 0 7 1308 570 236 0 0 chr6 94893294 94893417 -54623620 - ID_B1 SINE B4 -3 221 99 7 1308 293 292 10 20 chr6 94893420 94893518 -54623519 - B3A SINE B2 -100 98 2 7 1308 260 275 0 55 chr6 94893546 94893619 -54623418 + RSINE1 SINE B4 1 69 -96 7 1309 535 315 42 5 chr6 94896622 94896836 -54620201 + MER58A DNA MER1_type 3 224 0 7 1309 320 330 8 51 chr6 94897140 94897258 -54619779 - Tigger5 DNA MER2_type -2281 125 13 7 1309 909 266 119 36 chr6 94897409 94897744 -54619293 + MTEa LTR MaLR 3 365 -14 7 1309 251 211 8 34 chr6 94897913 94898031 -54619006 + (TATG)n Simple_repeat Simple_repeat 4 118 0 7 1309 476 288 6 22 chr6 94898080 94898261 -54618776 + (TATG)n Simple_repeat Simple_repeat 3 180 0 7 1309 286 261 10 42 chr6 94898287 94898383 -54618654 + (TATG)n Simple_repeat Simple_repeat 4 96 0 7 1309 267 114 0 0 chr6 94898428 94898472 -54618565 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1309 224 238 0 0 chr6 94898952 94898994 -54618043 + A-rich Low_complexity Low_complexity 2 43 0 7 1309 244 269 0 19 chr6 94899313 94899419 -54617618 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 1309 393 279 122 53 chr6 94899421 94899610 -54617427 - B4A SINE B4 -1 291 90 7 1309 207 0 0 0 chr6 94899895 94899918 -54617119 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1309 717 12 0 0 chr6 94900217 94900299 -54616738 + (TCCC)n Simple_repeat Simple_repeat 4 85 0 7 1309 222 239 70 0 chr6 94900912 94900983 -54616054 + MIR SINE MIR 85 160 -102 7 1309 208 143 0 0 chr6 94901394 94901429 -54615608 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 7 1309 1101 103 0 0 chr6 94902888 94903104 -54613933 + (TG)n Simple_repeat Simple_repeat 1 216 0 7 1309 520 241 94 30 chr6 94903426 94903627 -54613410 + ID_B1 SINE B4 3 216 -8 7 1309 1090 217 19 0 chr6 94903714 94903926 -54613111 + B3 SINE B2 1 216 0 7 1309 1661 176 51 32 chr6 94904095 94904470 -54612567 + RMER10B LTR ERVL 17 398 0 7 1309 216 345 8 8 chr6 94904778 94904895 -54612142 + L2a LINE L2 3055 3171 -255 7 1309 448 273 114 33 chr6 94904901 94905200 -54611837 - L1ME1 LINE L1 -36 6143 5821 7 1309 231 88 0 0 chr6 94905384 94905418 -54611619 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 7 1309 652 50 91 0 chr6 94905463 94905562 -54611475 - B2_Mm1t SINE B2 -85 108 1 7 1309 357 243 90 132 chr6 94905595 94905761 -54611276 - RSINE1 SINE B4 -6 159 1 7 1309 908 248 14 5 chr6 94905834 94906041 -54610996 - B3 SINE B2 -6 210 2 7 1309 250 254 0 0 chr6 94906053 94906116 -54610921 - L1ME1 LINE L1 -750 5429 5367 7 1309 1282 211 110 3 chr6 94906116 94906270 -54610767 - MTE2b LTR MaLR 0 379 199 7 1309 876 69 0 0 chr6 94906270 94906386 -54610651 + (GA)n Simple_repeat Simple_repeat 1 116 0 7 1309 1282 211 110 3 chr6 94906386 94906559 -54610478 - MTE2b LTR MaLR -181 198 18 7 1309 246 285 182 15 chr6 94907299 94907502 -54609535 + LTR50 LTR ERVL 1 237 -558 7 1309 234 0 0 0 chr6 94907679 94907705 -54609332 + (TTG)n Simple_repeat Simple_repeat 1 26 0 7 1309 680 256 70 20 chr6 94907710 94907909 -54609128 - ID_B1 SINE B4 -15 209 1 7 1309 523 326 106 29 chr6 94908897 94909247 -54607790 - MLT2B1 LTR ERVL -129 391 15 7 1309 232 180 0 20 chr6 94909695 94909718 -54607319 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1309 612 38 0 0 chr6 94909718 94909797 -54607240 + (GA)n Simple_repeat Simple_repeat 1 79 0 7 1309 232 180 0 20 chr6 94909797 94909824 -54607213 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1309 842 278 9 9 chr6 94909829 94910040 -54606997 - B4A SINE B4 -1 291 81 8 1309 593 282 45 50 chr6 94910048 94910246 -54606791 - B3A SINE B2 -5 211 15 8 1309 300 268 12 0 chr6 94910275 94910357 -54606680 - B4 SINE B4 -208 84 2 8 1309 309 278 43 2 chr6 94914046 94914170 -54602867 - MIR SINE MIR -74 194 62 8 1309 314 202 24 12 chr6 94914186 94914271 -54602766 - MER53 DNA hAT -98 95 10 8 1309 341 361 49 0 chr6 94914443 94914550 -54602487 - MER102a DNA MER1_type -68 262 147 8 1309 973 128 232 6 chr6 94914550 94914731 -54602306 + URR1A DNA MER1_type 5 226 0 8 1309 341 361 49 0 chr6 94914731 94914806 -54602231 - MER102a DNA MER1_type -184 146 72 8 1309 572 306 14 8 chr6 94915570 94915723 -54601314 - ID_B1 SINE B4 -54 238 84 8 1309 462 165 0 0 chr6 94916681 94916784 -54600253 + (TG)n Simple_repeat Simple_repeat 1 103 0 8 1309 673 329 55 31 chr6 94916824 94917081 -54599956 - B4A SINE B4 0 292 30 8 1309 331 294 49 42 chr6 94919477 94919619 -54597418 + B4A SINE B4 2 144 -148 8 1309 317 24 24 0 chr6 94919670 94919712 -54597325 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1309 180 135 0 0 chr6 94919725 94919762 -54597275 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 8 1309 3253 104 30 26 chr6 94919850 94920355 -54596682 + L1_Mus3 LINE L1 6132 6638 0 8 1309 225 269 0 19 chr6 94920710 94920763 -54596274 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1309 279 140 85 8 chr6 94920781 94920911 -54596126 + (TA)n Simple_repeat Simple_repeat 2 141 0 8 1309 386 20 20 0 chr6 94920968 94921019 -54596018 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 8 1309 255 79 0 0 chr6 94922390 94922428 -54594609 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 8 1309 977 214 0 5 chr6 94922630 94922818 -54594219 + B3 SINE B2 23 209 -7 8 1309 189 0 0 0 chr6 94922929 94922950 -54594087 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1309 492 177 0 20 chr6 94923004 94923102 -54593935 - PB1D10 SINE Alu -1 116 21 8 1309 453 317 113 58 chr6 94923712 94923987 -54593050 + B4A SINE B4 3 292 0 8 1309 401 208 20 26 chr6 94923988 94924141 -54592896 + (CATATA)n Simple_repeat Simple_repeat 6 157 0 8 1309 334 209 30 0 chr6 94924142 94924209 -54592828 + HAL1-3A_ME LINE L1 1977 2045 -813 8 1309 814 153 46 63 chr6 94927007 94927181 -54589856 + RLTR11A2 LTR ERVK 1 171 -356 8 1309 270 50 0 0 chr6 94927188 94927228 -54589809 + RLTR11B LTR ERVK 1 40 -413 8 1309 1471 196 65 11 chr6 94927243 94927594 -54589443 - RLTR11A2 LTR ERVK 0 527 158 8 1309 321 82 0 0 chr6 94928167 94928216 -54588821 + (TTGG)n Simple_repeat Simple_repeat 4 52 0 8 1309 1101 83 7 0 chr6 94928245 94928390 -54588647 - B1_Mm SINE Alu 0 147 2 8 1309 182 118 29 0 chr6 94929243 94929277 -54587760 + (TA)n Simple_repeat Simple_repeat 2 36 0 8 1309 348 281 64 32 chr6 94929287 94929412 -54587625 - ID_B1 SINE B4 -9 215 87 8 1309 210 71 0 0 chr6 94929806 94929834 -54587203 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1309 336 188 0 0 chr6 94930021 94930090 -54586947 + (CACG)n Simple_repeat Simple_repeat 3 71 0 8 1309 958 232 43 0 chr6 94930686 94930893 -54586144 + B3 SINE B2 1 216 0 8 1309 1312 59 10 0 chr6 94930900 94931107 -54585930 + (GGAA)n Simple_repeat Simple_repeat 1 209 0 8 1309 722 198 250 0 chr6 94931214 94931386 -54585651 - B3 SINE B2 0 216 2 8 1309 2006 217 17 39 chr6 94932131 94932597 -54584440 + Lx9 LINE L1 7029 7484 -160 8 1309 230 293 24 0 chr6 94932596 94932678 -54584359 - L1MD2 LINE L1 -87 6272 6189 8 1309 915 326 52 24 chr6 94932858 94932945 -54584092 - L1MD2 LINE L1 -412 5947 5849 8 1309 1327 51 6 0 chr6 94932945 94933120 -54583917 - L1Md_F2 LINE L1 -1 6581 6406 8 1309 915 329 52 23 chr6 94933120 94933632 -54583405 - L1MD2 LINE L1 -511 5848 5317 8 1309 570 222 19 71 chr6 94934203 94934358 -54582679 + B1F SINE Alu 3 149 0 8 1309 3209 266 142 15 chr6 94934359 94935469 -54581568 + Lx8 LINE L1 6172 7422 -51 8 1309 503 282 75 0 chr6 94935716 94935890 -54581147 - MER2 DNA MER2_type -32 313 127 8 1309 682 284 43 94 chr6 94935894 94936267 -54580770 + ORR1E LTR MaLR 1 354 -5 8 1309 1170 271 4 14 chr6 94938024 94938301 -54578736 + B4A SINE B4 1 274 -18 8 1309 267 93 0 0 chr6 94938324 94938367 -54578670 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1309 3315 26 34 0 chr6 94938715 94939098 -54577939 - MTA_Mm LTR MaLR 0 396 1 8 1309 9448 25 2 2 chr6 94939098 94940196 -54576841 - MTA_Mm-int LTR MaLR 0 1098 1 8 1309 3315 26 34 0 chr6 94940196 94940579 -54576458 - MTA_Mm LTR MaLR 0 396 1 8 1309 287 309 94 21 chr6 94941961 94942153 -54574884 - MIR SINE MIR -50 212 7 8 1309 230 363 35 0 chr6 94943382 94943495 -54573542 - PB1D10 SINE Alu 0 117 1 8 1309 255 308 13 0 chr6 94944012 94944090 -54572947 - MER5A1 DNA MER1_type -36 130 52 8 1309 211 344 0 0 chr6 94944145 94944209 -54572828 + ID4 SINE ID 14 77 -6 8 1309 285 146 0 0 chr6 94944212 94944260 -54572777 + (GGA)n Simple_repeat Simple_repeat 1 48 0 8 1309 943 78 0 54 chr6 94944752 94944900 -54572137 + L1_Mus1 LINE L1 6428 6567 0 8 1309 476 69 2 0 chr6 94945319 94945394 -54571643 - B1_Mus2 SINE Alu -51 76 1 8 1309 522 281 69 69 chr6 94945362 94945417 -54571620 + ORR1C2 LTR MaLR 138 193 -177 8 1309 1228 61 0 0 chr6 94945417 94945564 -54571473 - B1_Mus2 SINE Alu 0 147 1 8 1309 855 157 57 17 chr6 94945564 94945741 -54571296 + ORR1C2 LTR MaLR 194 384 0 8 1309 351 0 0 0 chr6 94945967 94946006 -54571031 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 8 1309 626 282 23 17 chr6 94946777 94946950 -54570087 - B3A SINE B2 -1 197 24 8 1309 1082 8 0 0 chr6 94947785 94947919 -54569118 + B1_Mus2 SINE Alu 6 139 -8 8 1309 185 0 40 0 chr6 94947919 94947944 -54569093 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1309 239 267 27 0 chr6 94947949 94948024 -54569013 - MIRc SINE MIR -169 99 23 8 1309 924 134 12 6 chr6 94948081 94948253 -54568784 + GA-rich Low_complexity Low_complexity 1 173 0 8 1309 252 167 21 0 chr6 94948253 94948301 -54568736 + G-rich Low_complexity Low_complexity 6 54 0 8 1309 876 211 21 26 chr6 94948313 94948503 -54568534 - B3 SINE B2 -25 191 3 8 1309 379 312 119 21 chr6 94949385 94949602 -54567435 + MTEb LTR MaLR 45 278 -101 8 1309 486 33 0 0 chr6 94949602 94949662 -54567375 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1309 379 290 140 13 chr6 94949662 94949676 -54567361 + MTEb LTR MaLR 279 292 -87 8 1309 264 330 35 9 chr6 94950468 94950584 -54566453 + MIRb SINE MIR 114 232 -36 8 1309 1706 244 110 19 chr6 94951185 94951657 -54565380 + Lx8 LINE L1 6959 7473 0 8 1309 1792 207 20 17 chr6 94951930 94952347 -54564690 + MTD LTR MaLR 2 405 -14 8 1309 349 345 99 0 chr6 94952908 94953079 -54563958 - MER20 DNA MER1_type 0 219 32 8 1309 257 167 0 18 chr6 94954210 94954265 -54562772 + T-rich Low_complexity Low_complexity 5 58 0 8 1309 631 218 53 0 chr6 94954299 94954432 -54562605 - B1_Mur1 SINE Alu -5 144 5 8 1309 676 303 57 54 chr6 94954606 94955011 -54562026 - L1MB8 LINE L1 -70 6108 5703 8 1309 486 177 0 30 chr6 94955019 94955118 -54561919 - B1_Mur3 SINE Alu -1 148 53 8 1309 709 275 59 17 chr6 94955120 94955409 -54561628 - L1MB8 LINE L1 -546 5638 5338 8 1309 818 286 0 5 chr6 94955435 94955646 -54561391 - B3 SINE B2 -4 212 3 8 1309 1050 256 107 68 chr6 94955736 94956276 -54560761 - L1MB8 LINE L1 -857 5289 4729 8 1309 399 308 72 0 chr6 94956317 94956571 -54560466 - RMER15 LTR ERVL -3 572 281 8 1309 352 274 62 0 chr6 94956679 94956792 -54560245 - L1MB8 LINE L1 -1483 4663 4544 8 1309 207 162 0 0 chr6 94957532 94957569 -54559468 + GA-rich Low_complexity Low_complexity 5 41 0 8 1309 2126 209 22 12 chr6 94957655 94958066 -54558971 + MTD LTR MaLR 3 417 -2 8 1309 303 28 0 0 chr6 94958474 94958510 -54558527 + (TTA)n Simple_repeat Simple_repeat 3 38 0 8 1309 904 211 73 10 chr6 94958550 94958742 -54558295 + B3 SINE B2 2 205 -11 8 1309 340 269 0 13 chr6 94958808 94958887 -54558150 - RSINE1 SINE B4 -75 90 13 8 1309 912 320 55 39 chr6 94959433 94959947 -54557090 - MT2A LTR ERVL -11 522 1 8 1309 912 202 64 25 chr6 94960032 94960235 -54556802 - B3 SINE B2 -5 211 1 8 1309 305 256 49 0 chr6 94960267 94960349 -54556688 + 4.5SRNA scRNA scRNA 5 90 -4 8 1309 489 339 36 10 chr6 94964283 94964477 -54552560 - MER44B DNA MER2_type -318 232 34 8 1309 768 250 0 0 chr6 94966183 94966343 -54550694 + RSINE1 SINE B4 5 164 -1 8 1309 481 300 23 8 chr6 94966391 94966522 -54550515 + RSINE1 SINE B4 10 142 -23 8 1309 647 219 6 0 chr6 94966577 94966755 -54550282 + (CA)n Simple_repeat Simple_repeat 1 179 0 8 1309 333 254 0 0 chr6 94966766 94966880 -54550157 + (CATA)n Simple_repeat Simple_repeat 1 114 0 8 1309 531 0 0 0 chr6 94967797 94967856 -54549181 + (TC)n Simple_repeat Simple_repeat 2 60 0 8 1309 450 294 33 8 chr6 94968661 94968781 -54548256 - B1F SINE Alu -7 142 20 8 1309 912 264 27 84 chr6 94968834 94969132 -54547905 - B4A SINE B4 -2 290 10 8 1309 561 173 21 25 chr6 94969285 94969531 -54547506 + (CA)n Simple_repeat Simple_repeat 1 244 0 8 1309 466 146 34 28 chr6 94969558 94969734 -54547303 + (CA)n Simple_repeat Simple_repeat 1 177 0 8 1309 327 75 94 0 chr6 94969768 94969821 -54547216 + HAL1-3A_ME LINE L1 1976 2033 -825 8 1309 424 225 21 10 chr6 94969887 94970027 -54547010 + LTR48 LTR ERV1 477 572 -215 8 1309 21 0 0 0 chr6 94970192 94970213 -54546824 + AT_rich Low_complexity Low_complexity 1 21 0 8 1309 243 158 0 50 chr6 94970329 94970389 -54546648 - L1M4 LINE L1 -3026 3120 3064 8 1309 587 174 20 7 chr6 94970390 94970540 -54546497 + CT-rich Low_complexity Low_complexity 2 153 0 8 1309 947 153 37 32 chr6 94970593 94970752 -54546285 + B2_Mm2 SINE B2 1 165 -30 8 1309 219 69 0 0 chr6 94970752 94970781 -54546256 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1309 947 153 37 32 chr6 94970781 94970810 -54546227 + B2_Mm2 SINE B2 166 190 -5 8 1309 788 194 14 0 chr6 94970821 94970960 -54546077 + B1_Mur2 SINE Alu 5 145 -4 8 1309 368 281 16 0 chr6 94971456 94971577 -54545460 - L1M4 LINE L1 -3144 3002 2880 8 1309 391 267 0 11 chr6 94973147 94973238 -54543799 + B4 SINE B4 2 91 -201 9 1309 726 72 0 0 chr6 94973255 94973352 -54543685 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 9 1309 628 284 13 128 chr6 94973362 94973522 -54543515 + B4 SINE B4 83 221 -71 9 1309 1087 111 50 44 chr6 94973522 94973702 -54543335 + B2_Mm2 SINE B2 1 181 -14 9 1309 628 284 13 128 chr6 94973702 94973767 -54543270 + B4 SINE B4 222 282 -10 9 1309 29 47 0 0 chr6 94973917 94973960 -54543077 + AT_rich Low_complexity Low_complexity 1 43 0 9 1309 320 122 0 0 chr6 94975771 94975820 -54541217 - ID_B1 SINE B4 -2 222 174 9 1309 354 155 42 14 chr6 94975776 94975848 -54541189 - PB1D10 SINE Alu -7 110 37 9 1309 238 286 61 96 chr6 94975875 94976072 -54540965 - Lx8 LINE L1 -2 7471 7282 9 1309 505 67 22 22 chr6 94976137 94976228 -54540809 + (CAGAGA)n Simple_repeat Simple_repeat 2 92 0 9 1309 1177 269 135 43 chr6 94977423 94977530 -54539507 + L1M4 LINE L1 872 975 -5929 9 1309 1072 206 8 75 chr6 94977530 94977771 -54539266 + URR1B DNA MER1_type 1 225 0 9 1309 1177 269 135 43 chr6 94977771 94978398 -54538639 + L1M4 LINE L1 976 1672 -5232 9 1309 808 123 0 0 chr6 94978408 94978530 -54538507 + B1_Mur4 SINE Alu 5 126 -24 9 1309 231 36 0 0 chr6 94978530 94978558 -54538479 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 9 1309 569 280 60 20 chr6 94978565 94978864 -54538173 + L1M4 LINE L1 1639 1949 -4955 9 1309 315 348 62 24 chr6 94979007 94979216 -54537821 + L1M4 LINE L1 1889 2105 -5229 9 1309 467 258 61 55 chr6 94979506 94979670 -54537367 - RLTR18B LTR ERVK -4 508 344 9 1309 36397 62 5 5 chr6 94979688 94985909 -54531128 - L1Md_F2 LINE L1 -15 6570 257 9 1309 1105 78 0 49 chr6 94985910 94986072 -54530965 - L1_Mm LINE L1 -725 5158 5005 9 1309 1186 239 24 30 chr6 94986168 94986466 -54530571 - RLTR18B LTR ERVK -216 296 1 9 1309 426 284 82 107 chr6 94986634 94986805 -54530232 + L1M4 LINE L1 2973 3133 -4201 9 1309 928 274 97 4 chr6 94986805 94987062 -54529975 + B4 SINE B4 2 282 -10 9 1309 426 289 78 98 chr6 94987062 94987279 -54529758 + L1M4 LINE L1 3134 3329 -4005 9 1309 258 151 75 0 chr6 94987282 94987335 -54529702 + ID4_ SINE ID 11 67 -16 9 1309 568 316 41 33 chr6 94987374 94987741 -54529296 + L1M4 LINE L1 3063 3432 -3574 9 1309 557 286 93 22 chr6 94987906 94988120 -54528917 + B4A SINE B4 2 231 -61 9 1309 304 258 0 38 chr6 94988120 94988209 -54528828 + B3A SINE B2 1 86 -130 9 1309 706 183 0 15 chr6 94988211 94988344 -54528693 + MT2A LTR ERVL 3 133 -400 9 1309 3158 107 40 70 chr6 94988343 94988946 -54528091 - RLTR6_Mm LTR ERV1 -69 585 1 9 1309 24219 29 31 15 chr6 94988946 94991826 -54525211 - MMVL30-int LTR ERV1 0 3698 772 9 1309 388 179 118 40 chr6 94992174 94992326 -54524711 - MMVL30-int LTR ERV1 -7023 533 280 9 1309 6656 24 46 17 chr6 94992320 94993126 -54523911 - RLTR6-int LTR ERV1 -6949 829 1 9 1309 3288 107 39 68 chr6 94993127 94993749 -54523288 - RLTR6_Mm LTR ERV1 -50 604 1 9 1309 1520 183 142 3 chr6 94993749 94994058 -54522979 + MT2A LTR ERVL 130 459 -74 9 1309 357 24 0 0 chr6 94994058 94994100 -54522937 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1309 1520 183 142 3 chr6 94994100 94994141 -54522896 + MT2A LTR ERVL 460 527 -6 9 1309 564 232 30 60 chr6 94994145 94994278 -54522759 + B3 SINE B2 82 210 -6 9 1309 297 243 95 0 chr6 94994278 94994352 -54522685 + B4A SINE B4 212 292 0 9 1309 681 229 153 0 chr6 94994676 94994833 -54522204 + B3A SINE B2 5 185 -13 9 1309 829 293 44 22 chr6 94994891 94995186 -54521851 + L1M1 LINE L1 5321 5623 -677 9 1309 1230 278 107 13 chr6 94995229 94995769 -54521268 + L1M4 LINE L1 4118 4708 -2298 9 1309 2339 152 128 23 chr6 94995829 94996093 -54520944 + RMER1B Other Other 580 857 -209 9 1309 4559 12 0 0 chr6 94996093 94996586 -54520451 + MT2_Mm LTR ERVL 1 493 0 9 1309 2339 152 128 23 chr6 94996586 94996760 -54520277 + RMER1B Other Other 858 1064 -2 9 1309 332 277 144 16 chr6 94996753 94997058 -54519979 + L1M4 LINE L1 5015 5358 -1648 9 1309 380 315 9 0 chr6 94997109 94997217 -54519820 + RSINE1 SINE B4 1 109 -56 9 1309 441 319 53 0 chr6 94997219 94997407 -54519630 + L1M4 LINE L1 5363 5560 -1446 9 1309 536 259 21 7 chr6 94997410 94997554 -54519483 + L1MB7 LINE L1 6030 6175 -9 9 1309 809 144 7 0 chr6 94997555 94997701 -54519336 + (CA)n Simple_repeat Simple_repeat 2 148 0 9 1309 1076 162 43 73 chr6 94997821 94998054 -54518983 - URR1A DNA MER1_type 0 226 1 9 1309 344 312 0 20 chr6 94998317 94998415 -54518622 - PB1D10 SINE Alu -1 116 21 9 1309 1028 136 10 56 chr6 94998469 94998664 -54518373 - B2_Mm2 SINE B2 -9 186 1 9 1309 1349 75 40 0 chr6 95001096 95001270 -54515767 - B2_Mm2 SINE B2 -14 181 1 1 1309 4469 196 37 27 chr6 95001279 95002327 -54514710 - Lx4B LINE L1 -366 6692 5841 2 1309 1129 126 48 21 chr6 95002419 95002605 -54514432 - B2_Mm2 SINE B2 -4 191 1 3 1309 607 242 16 0 chr6 95003166 95003290 -54513747 + RSINE1 SINE B4 2 127 -38 4 1309 423 0 0 0 chr6 95003320 95003367 -54513670 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1309 270 0 0 0 chr6 95003388 95003418 -54513619 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 6 1309 221 355 56 0 chr6 95004689 95004796 -54512241 + B1F2 SINE Alu 29 141 -8 7 1309 553 234 35 21 chr6 95004841 95004985 -54512052 - L1MB8 LINE L1 -6 6172 6027 8 1309 237 265 0 0 chr6 95005791 95005840 -54511197 + (CGTG)n Simple_repeat Simple_repeat 1 49 0 9 1309 843 206 0 0 chr6 95005840 95006020 -54511017 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1309 207 0 0 0 chr6 95006226 95006249 -54510788 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1 1309 323 269 86 20 chr6 95006374 95006526 -54510511 + MER33 DNA MER1_type 9 170 -154 1 1309 567 303 30 0 chr6 95006552 95006717 -54510320 - B3 SINE B2 0 216 47 1 1309 1971 56 0 4 chr6 95007040 95007290 -54509747 - L1Md_F2 LINE L1 -1 6581 6333 1 1309 877 68 0 0 chr6 95007292 95007409 -54509628 - B1_Mm SINE Alu -7 140 24 1 1309 235 236 36 0 chr6 95007795 95007850 -54509187 - ID SINE ID -167 57 1 1 1309 303 316 31 0 chr6 95007864 95007962 -54509075 - PB1D10 SINE Alu -6 111 11 1 1309 288 130 0 0 chr6 95008764 95008810 -54508227 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1309 429 70 0 0 chr6 95009076 95009133 -54507904 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1309 822 288 35 18 chr6 95009137 95009363 -54507674 - B4A SINE B4 -20 272 43 2 1309 311 136 0 17 chr6 95010934 95010970 -54506067 + polypyrimidine Low_complexity Low_complexity 25 60 0 2 1309 1329 73 0 0 chr6 95010970 95011148 -54505889 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 2 1309 311 136 0 17 chr6 95011148 95011171 -54505866 + polypyrimidine Low_complexity Low_complexity 2 24 0 2 1309 565 302 59 89 chr6 95011237 95011473 -54505564 - B4A SINE B4 -63 229 1 2 1309 231 196 183 11 chr6 95011768 95011861 -54505176 - L1M1 LINE L1 -371 5929 5821 2 1309 2005 99 6 9 chr6 95011876 95012193 -54504844 - IAPLTR2b LTR ERVK -11 316 1 2 1309 1108 298 32 32 chr6 95012193 95012661 -54504376 - L1_Rod LINE L1 -120 5727 5260 2 1309 3446 278 18 29 chr6 95012698 95013810 -54503227 - RMER1C Other Other -157 1185 375 2 1309 993 220 31 21 chr6 95014107 95014386 -54502651 - RMER1C Other Other -1106 236 65 2 1309 361 253 36 0 chr6 95014595 95014678 -54502359 - RMER1B Other Other -407 659 574 3 1309 4070 283 37 24 chr6 95014708 95016239 -54500798 - L1_Mur3 LINE L1 -589 5291 3741 3 1309 464 210 30 0 chr6 95016274 95016374 -54500663 - B1_Mur4 SINE Alu -6 144 42 3 1309 845 289 69 13 chr6 95016389 95016694 -54500343 - L1M2 LINE L1 -2374 3769 3448 3 1309 267 333 26 0 chr6 95017104 95017182 -54499855 + B1F SINE Alu 10 89 -60 3 1309 1202 61 0 0 chr6 95017469 95017616 -54499421 - B1_Mus2 SINE Alu 0 147 1 3 1309 26 0 0 0 chr6 95017719 95017745 -54499292 + AT_rich Low_complexity Low_complexity 1 26 0 3 1309 576 266 42 42 chr6 95018222 95018387 -54498650 + RSINE1 SINE B4 1 165 0 3 1309 787 236 25 51 chr6 95019217 95019446 -54497591 + B4 SINE B4 2 224 -68 3 1309 2171 94 3 28 chr6 95019446 95019773 -54497264 + ORR1A2 LTR MaLR 1 319 -8 3 1309 402 21 0 0 chr6 95019809 95019856 -54497181 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1309 1798 198 19 0 chr6 95020159 95020467 -54496570 + Lx9 LINE L1 6397 6710 -934 4 1309 52 50 0 0 chr6 95020508 95020588 -54496449 + AT_rich Low_complexity Low_complexity 1 80 0 4 1309 744 310 0 6 chr6 95021341 95021516 -54495521 - B3A SINE B2 -24 174 1 4 1309 1189 230 129 6 chr6 95021573 95021927 -54495110 + MTD LTR MaLR 23 399 -20 4 1309 706 241 79 36 chr6 95022012 95022292 -54494745 - L1MB2 LINE L1 -119 6052 5761 4 1309 507 289 23 51 chr6 95022324 95022499 -54494538 - L1MB2 LINE L1 -597 5586 5417 4 1309 2147 194 15 2 chr6 95022593 95022995 -54494042 + MTD LTR MaLR 1 407 -12 4 1309 549 278 95 95 chr6 95023005 95023216 -54493821 - B4 SINE B4 -80 212 2 4 1309 431 301 50 19 chr6 95024154 95024182 -54492855 - RSINE1 SINE B4 -1 164 132 4 1309 420 20 0 0 chr6 95024182 95024231 -54492806 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1309 431 301 50 19 chr6 95024231 95024361 -54492676 - RSINE1 SINE B4 -34 131 1 4 1309 1265 234 35 70 chr6 95024521 95024717 -54492320 - ORR1E LTR MaLR 0 359 185 5 1309 516 32 0 0 chr6 95024717 95024779 -54492258 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 1309 1265 234 35 70 chr6 95024779 95024954 -54492083 - ORR1E LTR MaLR -175 184 3 5 1309 181 311 31 82 chr6 95025112 95025210 -54491827 - L2c LINE L2 -217 3170 3078 5 1309 992 261 101 21 chr6 95025409 95025746 -54491291 - MLT1A0 LTR MaLR 0 365 2 5 1309 510 259 26 89 chr6 95025894 95026085 -54490952 - MTEa LTR MaLR -200 179 1 5 1309 449 264 110 6 chr6 95026205 95026369 -54490668 - ORR1E LTR MaLR 0 379 199 5 1309 591 165 74 8 chr6 95026362 95026484 -54490553 + B3 SINE B2 9 138 -78 5 1309 533 268 62 62 chr6 95026989 95027184 -54489853 - ORR1E LTR MaLR -162 197 3 5 1310 527 259 127 0 chr6 95028764 95028922 -54488115 + MTEa LTR MaLR 3 180 -199 5 1310 272 277 188 0 chr6 95029089 95029190 -54487847 - B3 SINE B2 -27 189 70 5 1310 637 268 52 24 chr6 95029183 95029393 -54487644 - B4A SINE B4 -41 251 36 5 1310 567 250 84 114 chr6 95029445 95029788 -54487249 - RLTR14 LTR ERV1 -49 333 1 6 1310 211 283 0 0 chr6 95029788 95029826 -54487211 - B4A SINE B4 -253 39 2 5 1310 1026 151 172 0 chr6 95030486 95030678 -54486359 + URR1B DNA MER1_type 1 225 0 6 1310 375 323 113 30 chr6 95030817 95031082 -54485955 - B4A SINE B4 -4 288 2 6 1310 864 116 17 1 chr6 95031177 95031334 -54485703 + B2_Mm2 SINE B2 2 170 -46 6 1310 330 26 0 0 chr6 95031337 95031376 -54485661 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 6 1310 239 352 21 21 chr6 95031700 95031842 -54485195 + ORSL-2b DNA Tip100 22 163 -345 6 1310 600 301 119 11 chr6 95031889 95032074 -54484963 - ID_B1 SINE B4 -8 216 12 6 1310 272 214 43 0 chr6 95032083 95032153 -54484884 - PB1D10 SINE Alu -1 116 44 6 1310 668 288 81 100 chr6 95032222 95032296 -54484741 + Lx9 LINE L1 7069 7130 -514 6 1310 800 264 39 0 chr6 95032296 95032504 -54484533 + B3 SINE B2 1 216 0 6 1310 668 302 82 87 chr6 95032504 95032919 -54484118 + Lx9 LINE L1 7003 7469 -175 6 1310 701 185 67 20 chr6 95033385 95033534 -54483503 - B3 SINE B2 0 216 61 7 1310 324 143 0 0 chr6 95033539 95033595 -54483442 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1310 632 266 29 0 chr6 95033956 95034095 -54482942 - B1_Mur1 SINE Alu -5 144 2 7 1310 1101 213 142 13 chr6 95034956 95035291 -54481746 - ORR1D1 LTR MaLR 0 378 4 7 1310 35 0 0 0 chr6 95036153 95036188 -54480849 + AT_rich Low_complexity Low_complexity 1 35 0 7 1310 3099 102 28 21 chr6 95036208 95036678 -54480359 - Lx LINE L1 -6 6648 6176 7 1310 3964 270 48 26 chr6 95036825 95037984 -54479053 - Lx8 LINE L1 0 7473 6289 7 1310 21 0 0 0 chr6 95038050 95038071 -54478966 + AT_rich Low_complexity Low_complexity 1 21 0 7 1310 263 303 6 18 chr6 95038340 95038463 -54478574 - L1MC LINE L1 -315 5809 5688 7 1310 1308 79 11 11 chr6 95038552 95038731 -54478306 + B2_Mm1t SINE B2 1 179 -14 7 1310 351 105 289 44 chr6 95038743 95038857 -54478180 + B2_Mm2 SINE B2 46 192 -3 8 1310 491 321 41 20 chr6 95039058 95039255 -54477782 + B4A SINE B4 44 244 -48 8 1310 877 214 133 0 chr6 95040433 95040629 -54476408 + ID_B1 SINE B4 1 222 -2 8 1310 797 101 0 32 chr6 95041581 95041704 -54475333 + B2_Mm2 SINE B2 2 120 -75 8 1310 395 231 78 62 chr6 95043090 95043219 -54473818 - RLTR33 LTR ERVK -86 592 462 8 1310 205 286 0 20 chr6 95043628 95043678 -54473359 + MIRb SINE MIR 25 73 -195 8 1310 279 79 0 0 chr6 95044669 95044707 -54472330 + (CAG)n Simple_repeat Simple_repeat 1 38 0 8 1310 245 235 0 19 chr6 95044707 95044759 -54472278 + polypurine Low_complexity Low_complexity 4 54 0 8 1310 273 350 0 20 chr6 95045598 95045700 -54471337 + PB1 SINE Alu 4 103 -24 8 1310 993 247 75 36 chr6 95045751 95045829 -54471208 - ORR1D2 LTR MaLR -51 319 244 8 1310 410 0 20 0 chr6 95045829 95045879 -54471158 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1310 993 247 75 36 chr6 95045879 95046107 -54470930 - ORR1D2 LTR MaLR -127 243 1 8 1310 459 170 8 125 chr6 95046154 95046195 -54470842 - L1MC3 LINE L1 -1644 6141 6105 9 1310 262 200 57 98 chr6 95046195 95046317 -54470720 - PB1D7 SINE Alu 0 120 4 9 1310 459 170 8 125 chr6 95046317 95046403 -54470634 - L1MC3 LINE L1 -1681 6104 6029 9 1310 182 37 37 0 chr6 95046404 95046431 -54470606 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 9 1310 254 111 44 0 chr6 95046582 95046627 -54470410 - L1MC4 LINE L1 -530 7512 7466 9 1310 888 167 0 0 chr6 95046994 95047162 -54469875 + GA-rich Low_complexity Low_complexity 2 169 0 9 1310 625 238 54 0 chr6 95047302 95047449 -54469588 - B4A SINE B4 -1 291 137 9 1310 1419 70 37 0 chr6 95047484 95047671 -54469366 - B2_Mm2 SINE B2 0 195 2 9 1310 212 292 30 40 chr6 95049274 95049374 -54467663 + MIR SINE MIR 67 165 -97 9 1310 4645 48 33 0 chr6 95049625 95050194 -54466843 - L1Md_F2 LINE L1 -13 6569 5982 9 1310 966 19 0 0 chr6 95050194 95050301 -54466736 - U6 snRNA snRNA 0 107 1 1 1310 216 0 0 0 chr6 95050865 95050889 -54466148 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 1 1310 316 261 34 51 chr6 95050963 95051080 -54465957 + RSINE1 SINE B4 5 119 -46 1 1310 339 307 53 0 chr6 95051798 95051912 -54465125 - PB1D7 SINE Alu 0 120 1 1 1310 720 263 123 4 chr6 95052007 95052251 -54464786 - B4A SINE B4 -1 291 19 1 1310 511 247 59 17 chr6 95052299 95052456 -54464581 - L1MA4 LINE L1 -209 5947 5786 1 1310 247 222 32 0 chr6 95052483 95052546 -54464491 + GA-rich Low_complexity Low_complexity 1 65 0 1 1310 258 226 113 25 chr6 95052546 95052678 -54464359 - L1MA4 LINE L1 -2216 5779 5627 1 1310 2536 100 12 7 chr6 95052696 95053107 -54463930 + RMER16 LTR ERVK 1 533 0 1 1310 437 299 119 26 chr6 95053269 95053420 -54463617 + RSINE1 SINE B4 1 165 0 1 1310 183 129 0 0 chr6 95053560 95053591 -54463446 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1310 1380 260 42 14 chr6 95053843 95054269 -54462768 + BGLII_B LTR ERVK 1 438 -3 1 1310 507 235 33 28 chr6 95054295 95054460 -54462577 - L1M5 LINE L1 -395 5729 5560 1 1310 233 49 73 0 chr6 95055037 95055078 -54461959 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1310 661 215 28 0 chr6 95055684 95055828 -54461209 + B1_Mus1 SINE Alu 1 148 0 1 1310 260 305 40 56 chr6 95056800 95056925 -54460112 + ORR1E LTR MaLR 22 144 -215 1 1310 252 0 0 0 chr6 95056942 95056970 -54460067 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1310 356 181 12 0 chr6 95057288 95057371 -54459666 + CT-rich Low_complexity Low_complexity 2 85 0 1 1310 213 253 117 32 chr6 95057388 95057482 -54459555 - BC1_Mm scRNA scRNA -37 115 14 1 1310 329 299 65 9 chr6 95057494 95057602 -54459435 - B1F SINE Alu -6 143 30 1 1310 570 343 59 5 chr6 95057714 95057916 -54459121 - MER20 DNA MER1_type 0 219 7 1 1310 463 239 50 112 chr6 95058580 95058695 -54458342 + Lx9 LINE L1 7339 7442 -202 1 1310 297 0 0 0 chr6 95058695 95058728 -54458309 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1310 387 0 0 0 chr6 95058728 95058770 -54458267 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1310 463 239 50 112 chr6 95058770 95058832 -54458205 + Lx9 LINE L1 7443 7505 -139 1 1310 342 0 0 0 chr6 95059201 95059239 -54457798 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1310 1167 101 0 0 chr6 95059392 95059551 -54457486 + B2_Mm2 SINE B2 1 159 -36 1 1310 405 0 0 0 chr6 95059551 95059596 -54457441 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 1 1310 304 125 0 51 chr6 95060383 95060442 -54456595 + B1_Mur4 SINE Alu 5 60 -90 1 1310 395 0 0 163 chr6 95060444 95060659 -54456378 + (CAGAG)n Simple_repeat Simple_repeat 1 180 0 1 1310 503 165 0 0 chr6 95060594 95060673 -54456364 + (CAGAGA)n Simple_repeat Simple_repeat 1 79 0 1 1310 252 234 0 0 chr6 95060673 95060767 -54456270 + GA-rich Low_complexity Low_complexity 2 95 0 1 1310 452 154 143 0 chr6 95060780 95060871 -54456166 + B1_Mus2 SINE Alu 42 145 -2 1 1310 414 39 0 0 chr6 95061118 95061170 -54455867 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1310 262 88 17 50 chr6 95061358 95061418 -54455619 + T-rich Low_complexity Low_complexity 2 59 0 1 1310 1246 55 14 0 chr6 95061422 95061568 -54455469 - B1_Mus1 SINE Alu 0 148 1 1 1310 1027 224 53 10 chr6 95061746 95061953 -54455084 + B3 SINE B2 1 216 0 1 1310 852 57 306 21 chr6 95061958 95062102 -54454935 - B2_Mm2 SINE B2 -7 188 4 1 1310 427 291 104 25 chr6 95062234 95062435 -54454602 + MER20 DNA MER1_type 2 218 -1 1 1310 228 188 62 0 chr6 95063447 95063511 -54453526 + CT-rich Low_complexity Low_complexity 2 69 0 1 1310 775 199 13 20 chr6 95063580 95063729 -54453308 + B1_Mur1 SINE Alu 1 148 -1 1 1310 354 23 0 0 chr6 95064443 95064486 -54452551 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1310 2639 73 80 45 chr6 95064830 95065094 -54451943 + RMER16 LTR ERVK 1 384 -149 1 1310 1443 94 0 6 chr6 95065094 95065276 -54451761 - B2_Mm2 SINE B2 -14 181 1 1 1310 2639 65 86 49 chr6 95065276 95065441 -54451596 + RMER16 LTR ERVK 385 533 0 1 1310 24 0 0 0 chr6 95066330 95066354 -54450683 + AT_rich Low_complexity Low_complexity 1 24 0 1 1310 241 150 0 0 chr6 95066555 95066595 -54450442 + B4A SINE B4 3 42 -250 1 1310 531 0 0 0 chr6 95066596 95066655 -54450382 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1310 256 316 30 59 chr6 95066662 95066763 -54450274 + B4A SINE B4 188 285 -7 1 1310 225 0 0 0 chr6 95066792 95066817 -54450220 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 1 1310 279 141 0 0 chr6 95066837 95066901 -54450136 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1310 229 255 0 18 chr6 95069036 95069092 -54447945 - MER33 DNA MER1_type -266 58 4 1 1310 207 0 0 0 chr6 95069191 95069214 -54447823 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1310 639 227 47 8 chr6 95070142 95070271 -54446766 + B1_Mur2 SINE Alu 5 138 -11 1 1310 402 333 124 70 chr6 95071089 95071563 -54445474 - MER34 LTR ERV1 -41 501 2 1 1310 1040 218 18 50 chr6 95073256 95073478 -54443559 - B3 SINE B2 0 216 2 1 1310 1088 220 35 5 chr6 95073501 95073702 -54443335 - B3 SINE B2 -9 207 1 1 1310 919 260 91 8 chr6 95073781 95074033 -54443004 - B4A SINE B4 -4 288 16 1 1310 219 261 0 30 chr6 95074185 95074252 -54442785 + CT-rich Low_complexity Low_complexity 4 68 0 1 1310 180 0 0 0 chr6 95074329 95074349 -54442688 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1310 1450 87 11 0 chr6 95074427 95074611 -54442426 + B2_Mm1t SINE B2 1 186 -7 1 1310 321 82 0 0 chr6 95075532 95075581 -54441456 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1310 306 248 90 18 chr6 95075746 95075857 -54441180 + PB1D7 SINE Alu 1 119 -1 1 1310 1328 34 0 0 chr6 95076140 95076287 -54440750 - B1_Mm SINE Alu 0 147 1 1 1310 405 295 191 40 chr6 95079890 95080264 -54436773 + L2b LINE L2 2661 3086 -289 1 1310 680 222 116 12 chr6 95080285 95080449 -54436588 + B3 SINE B2 3 183 -33 1 1310 778 47 19 0 chr6 95080483 95080589 -54436448 - L1_Mus2 LINE L1 -1 6565 6458 1 1310 2757 169 73 35 chr6 95080590 95081610 -54435427 - Lx5 LINE L1 -485 6565 5283 1 1310 246 128 0 0 chr6 95081624 95081663 -54435374 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1310 27130 103 16 3 chr6 95081670 95086460 -54430577 - L1_Mus3 LINE L1 -16 6622 1771 1 1310 5591 152 27 6 chr6 95086464 95087396 -54429641 - L1VL2 LINE L1 -5290 1045 95 1 1310 4233 87 14 4 chr6 95087399 95087950 -54429087 - L1_Mus4 LINE L1 0 6636 6080 1 1310 21388 141 33 70 chr6 95087950 95088754 -54428283 - Lx5 LINE L1 -586 5291 4506 1 1310 3146 52 41 13 chr6 95088754 95089146 -54427891 - MTB_Mm LTR MaLR 0 407 5 1 1310 21388 141 33 70 chr6 95089146 95091702 -54425335 - Lx5 LINE L1 -1372 4505 2064 1 1310 315 0 0 0 chr6 95091702 95091737 -54425300 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1310 21388 141 33 70 chr6 95091737 95091855 -54425182 - Lx5 LINE L1 -3814 2063 2014 1 1310 258 32 0 0 chr6 95091855 95091886 -54425151 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1310 21388 141 33 70 chr6 95091886 95092365 -54424672 - Lx5 LINE L1 -3864 2013 1519 1 1310 630 39 0 0 chr6 95092365 95092442 -54424595 + (TCC)n Simple_repeat Simple_repeat 3 79 0 1 1310 21388 147 32 44 chr6 95092442 95093050 -54423987 - Lx5 LINE L1 -4359 1518 868 1 1310 631 261 86 54 chr6 95093391 95093577 -54423460 - B3A SINE B2 -6 192 1 1 1310 621 201 187 4 chr6 95093898 95094123 -54422914 - L1MCa LINE L1 -2544 3777 3512 1 1310 339 44 0 0 chr6 95094160 95094205 -54422832 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1310 305 291 136 0 chr6 95094243 95094346 -54422691 - PB1D10 SINE Alu 0 117 1 1 1310 1286 76 0 0 chr6 95094390 95094561 -54422476 + L1Md_F2 LINE L1 6412 6582 0 1 1310 231 61 0 0 chr6 95094686 95094719 -54422318 + (ATTG)n Simple_repeat Simple_repeat 1 33 0 1 1310 425 91 13 0 chr6 95094732 95094796 -54422241 - B2_Mm2 SINE B2 -83 115 46 1 1310 362 300 206 25 chr6 95094868 95095227 -54421810 - L1MCa LINE L1 -4144 2364 1941 1 1310 516 250 46 59 chr6 95095306 95095544 -54421493 - L1MCa LINE L1 -4692 1816 1582 1 1310 316 294 97 77 chr6 95095700 95095947 -54421090 - L1MCa LINE L1 -5987 521 270 1 1310 366 292 104 0 chr6 95096654 95096798 -54420239 + MIRb SINE MIR 89 247 -21 1 1310 342 269 90 85 chr6 95097156 95097227 -54419810 - MLT1A0 LTR MaLR -144 221 152 1 1310 268 268 127 0 chr6 95097227 95097298 -54419739 - ID4 SINE ID -3 80 1 1 1310 342 269 90 85 chr6 95097298 95097437 -54419600 - MLT1A0 LTR MaLR -214 151 10 1 1310 2597 152 97 12 chr6 95097769 95098254 -54418783 - RLTR11A LTR ERVK -2 526 1 1 1310 2124 52 0 4 chr6 95098449 95098698 -54418339 - L1_Mus1 LINE L1 -1 6566 6319 1 1310 353 234 0 78 chr6 95098837 95098939 -54418098 + ID4 SINE ID 9 102 -50 1 1310 22 70 0 0 chr6 95099583 95099626 -54417411 + AT_rich Low_complexity Low_complexity 1 43 0 1 1310 402 259 12 0 chr6 95099649 95099730 -54417307 + B4A SINE B4 1 82 -210 1 1310 21 0 0 0 chr6 95101622 95101643 -54415394 + AT_rich Low_complexity Low_complexity 1 21 0 1 1310 382 241 11 33 chr6 95101670 95101760 -54415277 - B3 SINE B2 -119 97 10 1 1310 221 182 0 18 chr6 95102078 95102134 -54414903 + CT-rich Low_complexity Low_complexity 1 55 0 1 1310 258 32 0 0 chr6 95102243 95102274 -54414763 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1310 252 143 0 0 chr6 95102358 95102400 -54414637 + (GGA)n Simple_repeat Simple_repeat 2 43 0 1 1310 2817 142 118 56 chr6 95103081 95103632 -54413405 - RMER4B LTR ERVK 0 585 1 1 1310 924 270 75 39 chr6 95103768 95103981 -54413056 + B4 SINE B4 2 216 -76 1 1310 342 67 0 0 chr6 95103981 95104026 -54413011 + (CAAG)n Simple_repeat Simple_repeat 2 46 0 1 1310 924 270 75 39 chr6 95104026 95104093 -54412944 + B4 SINE B4 217 292 0 1 1310 465 19 0 0 chr6 95104136 95104190 -54412847 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1310 237 211 0 0 chr6 95105062 95105114 -54411923 + A-rich Low_complexity Low_complexity 2 53 0 1 1310 248 366 57 0 chr6 95105638 95105761 -54411276 - Tigger5 DNA MER2_type 0 2406 2277 1 1310 284 333 9 0 chr6 95105803 95105914 -54411123 - Tigger5 DNA MER2_type -2274 132 21 1 1310 830 218 114 0 chr6 95105989 95106182 -54410855 - B3 SINE B2 0 216 2 1 1310 1153 205 19 9 chr6 95106207 95106419 -54410618 - B3 SINE B2 -2 214 1 2 1310 278 218 0 18 chr6 95106497 95106553 -54410484 - B1F1 SINE Alu -93 56 2 2 1310 315 235 0 0 chr6 95106771 95106839 -54410198 - ID4_ SINE ID -15 68 1 2 1310 297 351 93 16 chr6 95106975 95107169 -54409868 + MIR SINE MIR 41 249 -13 2 1310 385 260 150 0 chr6 95107478 95107605 -54409432 - B1_Mur1 SINE Alu 0 149 4 2 1310 288 111 0 0 chr6 95107609 95107654 -54409383 + (TCTCC)n Simple_repeat Simple_repeat 3 47 0 2 1310 2647 67 0 18 chr6 95107653 95108019 -54409018 - L1Md_F2 LINE L1 0 6582 6253 2 1310 511 103 0 0 chr6 95108019 95108087 -54408950 + L1Md_F2 LINE L1 6029 6096 -486 2 1310 207 0 0 0 chr6 95108356 95108379 -54408658 + (TATG)n Simple_repeat Simple_repeat 4 26 0 2 1310 1941 78 82 63 chr6 95108399 95108714 -54408323 - ORR1A4 LTR MaLR -8 321 1 2 1310 7462 121 21 6 chr6 95109075 95110844 -54406193 - Lx LINE L1 0 6654 4862 2 1310 5526 103 13 13 chr6 95110843 95112284 -54404753 - L1VL4 LINE L1 -1922 1637 200 2 1310 487 225 6 11 chr6 95112350 95112530 -54404507 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1310 194 235 12 0 chr6 95112543 95112624 -54404413 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 1310 395 251 0 11 chr6 95112636 95112817 -54404220 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1310 558 164 0 0 chr6 95112865 95112987 -54404050 + (CA)n Simple_repeat Simple_repeat 1 122 0 2 1310 264 290 39 24 chr6 95112988 95113115 -54403922 + Lx8 LINE L1 7343 7471 -2 2 1310 758 244 35 37 chr6 95113137 95113372 -54403665 + ID_B1 SINE B4 10 235 -57 2 1310 455 118 13 0 chr6 95113404 95113480 -54403557 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1310 210 227 0 0 chr6 95113489 95113533 -54403504 + CT-rich Low_complexity Low_complexity 1 44 0 2 1310 289 297 144 7 chr6 95114498 95114637 -54402400 + MER20 DNA MER1_type 4 161 -58 2 1310 421 246 273 25 chr6 95114642 95114880 -54402157 - RMER15 LTR ERVL -3 572 276 2 1310 473 176 15 0 chr6 95115649 95115785 -54401252 + (CAGA)n Simple_repeat Simple_repeat 1 138 0 2 1310 453 270 26 0 chr6 95116028 95116143 -54400894 - PB1D9 SINE Alu -2 118 1 2 1310 646 313 71 20 chr6 95116328 95116582 -54400455 - MLT1E2 LTR MaLR -339 288 22 2 1310 960 264 142 57 chr6 95116605 95116922 -54400115 - MTE2b LTR MaLR -35 344 1 2 1310 342 0 0 0 chr6 95117237 95117275 -54399762 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1310 325 250 0 62 chr6 95119770 95119851 -54397186 + ID4_ SINE ID 2 77 -6 2 1310 234 231 62 0 chr6 95119857 95119871 -54397166 + PB1D7 SINE Alu 52 120 0 2 1310 266 176 0 0 chr6 95119871 95119922 -54397115 + ID_B1 SINE B4 174 224 0 2 1310 239 244 79 34 chr6 95119943 95120032 -54397005 - L1MB1 LINE L1 -5 6163 6071 2 1310 29 28 0 0 chr6 95121401 95121437 -54395600 + AT_rich Low_complexity Low_complexity 1 36 0 2 1310 986 172 0 0 chr6 95122247 95122392 -54394645 + B1_Mus1 SINE Alu 2 146 -2 2 1310 222 136 0 0 chr6 95122392 95122436 -54394601 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 2 1310 204 179 26 0 chr6 95122552 95122591 -54394446 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1310 342 309 53 26 chr6 95122611 95122724 -54394313 + B4 SINE B4 81 196 -96 2 1310 2267 258 76 42 chr6 95122874 95123770 -54393267 + L1M2 LINE L1 4058 4983 -1160 2 1310 1376 217 40 90 chr6 95123889 95123950 -54393087 - MT2A LTR ERVL -2 531 488 2 1310 691 75 19 0 chr6 95123950 95124057 -54392980 + (TCTA)n Simple_repeat Simple_repeat 2 110 0 2 1310 1376 217 40 90 chr6 95124057 95124395 -54392642 - MT2A LTR ERVL -46 487 152 2 1310 298 186 17 0 chr6 95124414 95124473 -54392564 - MT2A LTR ERVL -473 60 1 2 1310 662 319 91 91 chr6 95124480 95125235 -54391802 - L1M4 LINE L1 -5773 769 15 2 1310 215 178 0 22 chr6 95125368 95125414 -54391623 + (TTA)n Simple_repeat Simple_repeat 1 45 0 2 1310 623 266 70 12 chr6 95125414 95125585 -54391452 - B3A SINE B2 -16 182 2 2 1310 4113 188 90 15 chr6 95125757 95126627 -54390410 + Lx2B LINE L1 6063 6997 -3 2 1310 21 0 0 0 chr6 95126723 95126744 -54390293 + AT_rich Low_complexity Low_complexity 1 21 0 2 1310 503 317 7 20 chr6 95126771 95126919 -54390118 - RSINE1 SINE B4 -5 160 15 2 1310 588 320 27 0 chr6 95127172 95127322 -54389715 + B3A SINE B2 4 157 -41 2 1310 369 0 0 0 chr6 95127330 95127371 -54389666 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1310 22 0 0 0 chr6 95127374 95127396 -54389641 + AT_rich Low_complexity Low_complexity 1 22 0 2 1310 459 291 0 146 chr6 95127405 95127570 -54389467 + B1F SINE Alu 3 143 -6 2 1310 1440 157 9 5 chr6 95128454 95128678 -54388359 - URR1B DNA MER1_type 0 225 1 2 1310 280 326 144 55 chr6 95129125 95129271 -54387766 + RSINE1 SINE B4 3 161 -4 2 1310 210 156 0 0 chr6 95129273 95129318 -54387719 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2 1310 26 50 0 0 chr6 95129581 95129621 -54387416 + AT_rich Low_complexity Low_complexity 1 40 0 2 1310 3074 52 0 3 chr6 95130959 95131325 -54385712 + L1Md_F2 LINE L1 6213 6577 -5 2 1310 385 19 0 36 chr6 95131636 95131692 -54385345 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1310 228 278 89 0 chr6 95132399 95132489 -54384548 + MER103 DNA DNA 22 119 -47 2 1310 21 36 0 0 chr6 95132689 95132717 -54384320 + AT_rich Low_complexity Low_complexity 1 28 0 2 1310 306 227 40 0 chr6 95132762 95132854 -54384183 + L1ME2z LINE L1 4791 4885 -1261 2 1310 1242 247 62 40 chr6 95132852 95133183 -54383854 + L1ME2z LINE L1 5139 5474 -970 2 1310 2577 158 50 2 chr6 95133183 95133584 -54383453 - MTC LTR MaLR -1 420 1 2 1310 1242 261 121 76 chr6 95133584 95133971 -54383066 + L1ME2z LINE L1 5475 5890 -554 2 1310 341 136 15 0 chr6 95134097 95134163 -54382874 + GA-rich Low_complexity Low_complexity 3 69 0 2 1310 1400 214 57 88 chr6 95134370 95134826 -54382211 - RMER10A LTR ERVL 0 442 1 2 1310 454 371 66 24 chr6 95135596 95136115 -54380922 - L2a LINE L2 -2 3424 2886 2 1310 192 179 0 0 chr6 95136204 95136243 -54380794 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1310 805 283 46 89 chr6 95136243 95136546 -54380491 - B4 SINE B4 0 292 3 2 1310 314 350 171 34 chr6 95136546 95137141 -54379896 - L2a LINE L2 -595 2824 2148 2 1310 194 417 0 0 chr6 95137350 95137434 -54379603 - MIR SINE MIR -147 115 32 2 1310 184 306 80 20 chr6 95137501 95137601 -54379436 + MIRm SINE MIR 44 149 -127 2 1310 235 274 0 0 chr6 95137643 95137694 -54379343 + CT-rich Low_complexity Low_complexity 5 55 0 2 1310 700 226 65 22 chr6 95138079 95138264 -54378773 + B3A SINE B2 6 198 0 2 1310 669 347 50 29 chr6 95139279 95139662 -54377375 + Charlie25 DNA MER1_type 207 597 -1927 2 1310 230 354 26 9 chr6 95140034 95140148 -54376889 + Charlie25 DNA MER1_type 1788 1903 -621 2 1310 834 177 9 8 chr6 95140210 95140449 -54376588 - ORR1B2 LTR MaLR -1 383 38 2 1310 1494 243 106 8 chr6 95140720 95141097 -54375940 + MTD LTR MaLR 1 414 -5 2 1310 206 105 0 26 chr6 95141252 95141291 -54375746 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 1310 24 32 0 0 chr6 95141528 95141559 -54375478 + AT_rich Low_complexity Low_complexity 1 31 0 2 1310 249 380 90 0 chr6 95142051 95142151 -54374886 + MER2 DNA MER2_type 2 110 -235 2 1310 398 399 17 6 chr6 95143011 95143190 -54373847 + Tigger5 DNA MER2_type 1 181 -2225 2 1310 333 264 50 76 chr6 95143386 95143505 -54373532 + B1F1 SINE Alu 27 142 -7 2 1310 374 263 0 0 chr6 95143575 95143651 -54373386 - ID_B1 SINE B4 -33 191 116 2 1310 243 319 0 0 chr6 95143653 95143713 -54373324 - L2b LINE L2 -19 3407 3304 2 1310 398 261 146 18 chr6 95143824 95144043 -54372994 + L1ME4a LINE L1 5637 5883 -241 2 1310 22 56 0 0 chr6 95144115 95144151 -54372886 + AT_rich Low_complexity Low_complexity 1 36 0 2 1310 562 225 65 74 chr6 95144227 95144443 -54372594 - B3 SINE B2 -1 215 2 2 1310 207 0 0 0 chr6 95144488 95144511 -54372526 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1310 366 42 0 0 chr6 95144525 95144573 -54372464 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 2 1310 346 292 100 40 chr6 95145290 95145490 -54371547 - LTR16C LTR ERVL -3 486 275 2 1310 235 217 163 35 chr6 95145734 95145820 -54371217 + MLT1C LTR MaLR 352 448 -19 2 1310 403 268 14 0 chr6 95145844 95145984 -54371053 - MER89 LTR ERV1 -319 240 1 2 1310 309 26 0 0 chr6 95146164 95146202 -54370835 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 1310 269 240 80 0 chr6 95146585 95146660 -54370377 - ORR1E LTR MaLR -258 101 21 2 1310 345 226 35 12 chr6 95147301 95147386 -54369651 - B1F SINE Alu -1 148 62 2 1310 1228 247 42 35 chr6 95147433 95147722 -54369315 + B4A SINE B4 2 292 0 2 1310 271 259 0 0 chr6 95147722 95147809 -54369228 + (CA)n Simple_repeat Simple_repeat 1 87 0 2 1310 761 265 11 31 chr6 95148148 95148339 -54368698 + ID_B1 SINE B4 7 193 -31 2 1310 466 296 101 0 chr6 95148476 95148645 -54368392 + MER5A DNA MER1_type 1 186 -3 2 1310 277 183 13 53 chr6 95148917 95148992 -54368045 - MER46C DNA MER2_type -11 327 256 2 1310 260 191 0 139 chr6 95149330 95149409 -54367628 + PB1D9 SINE Alu 38 105 -15 2 1310 205 186 0 0 chr6 95149410 95149453 -54367584 + T-rich Low_complexity Low_complexity 1 43 0 2 1310 307 296 133 0 chr6 95149469 95149567 -54367470 + PB1D10 SINE Alu 1 111 -6 2 1310 579 321 31 25 chr6 95149619 95149782 -54367255 + RSINE1 SINE B4 2 165 0 2 1310 220 53 26 26 chr6 95151242 95151281 -54365756 + (TAA)n Simple_repeat Simple_repeat 3 41 0 2 1310 652 326 127 17 chr6 95151550 95151738 -54365299 + RMER5 LTR ERV1 1 220 -314 2 1310 257 0 0 29 chr6 95151738 95151772 -54365265 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2 1310 652 326 127 17 chr6 95151772 95152064 -54364973 + RMER5 LTR ERV1 221 533 -1 2 1310 25 0 0 0 chr6 95153821 95153846 -54363191 + AT_rich Low_complexity Low_complexity 1 25 0 2 1310 319 292 211 11 chr6 95154458 95154904 -54362133 + L1MCb LINE L1 570 1104 -4941 2 1310 729 272 139 34 chr6 95155294 95155770 -54361267 + L1MCb LINE L1 3960 4485 -2079 2 1310 248 102 39 39 chr6 95155770 95155821 -54361216 + (TCTCTG)n Simple_repeat Simple_repeat 1 51 0 3 1310 594 189 0 0 chr6 95155828 95156008 -54361029 + CT-rich Low_complexity Low_complexity 1 180 0 3 1310 537 181 0 0 chr6 95155974 95156151 -54360886 + (TCTG)n Simple_repeat Simple_repeat 4 180 0 3 1310 273 274 83 19 chr6 95156176 95156284 -54360753 + L1MCb LINE L1 4477 4591 -1973 2 1310 516 200 0 0 chr6 95156354 95156464 -54360573 + A-rich Low_complexity Low_complexity 1 110 0 3 1310 1205 58 0 0 chr6 95156664 95156802 -54360235 + B1_Mus2 SINE Alu 2 139 -8 3 1310 315 0 0 0 chr6 95156809 95156844 -54360193 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1310 329 296 29 15 chr6 95156872 95157009 -54360028 + L1MCb LINE L1 4883 5021 -1543 2 1310 1063 148 0 0 chr6 95157021 95157170 -54359867 + B1_Mur4 SINE Alu 2 150 0 3 1310 648 243 32 26 chr6 95157181 95157337 -54359700 - B3 SINE B2 0 216 60 3 1310 276 234 13 0 chr6 95157344 95157421 -54359616 + L1MC LINE L1 4591 4668 -1478 3 1310 261 140 0 0 chr6 95157613 95157670 -54359367 + (ATGGTG)n Simple_repeat Simple_repeat 6 62 0 3 1310 233 286 63 0 chr6 95157702 95157765 -54359272 + ID_B1 SINE B4 36 102 -122 3 1310 256 298 19 19 chr6 95157824 95157930 -54359107 + L1MCb LINE L1 5421 5526 -1032 2 1310 392 293 24 24 chr6 95158050 95158176 -54358861 + PB1 SINE Alu 2 127 0 3 163 1104 130 3 2 chr6 95158235 95158820 -54358217 + (CA)n Simple_repeat Simple_repeat 1 585 0 3 1311 872 289 136 10 chr6 95158836 95159242 -54357795 + L1MC LINE L1 5333 5789 -1996 3 1311 656 267 254 0 chr6 95159736 95159953 -54357084 + B4 SINE B4 3 274 -18 3 1311 38857 30 1 0 chr6 95160110 95166599 -54350438 - L1Md_T LINE L1 0 6585 69 3 1311 490 292 68 7 chr6 95166715 95166863 -54350174 - RSINE1 SINE B4 -3 162 6 3 1311 181 205 0 25 chr6 95167022 95167062 -54349975 + MIRb SINE MIR 204 242 -26 3 1311 869 242 18 50 chr6 95168048 95168270 -54348767 + ID_B1 SINE B4 5 219 -5 3 1311 848 239 38 28 chr6 95168328 95168539 -54348498 + B3 SINE B2 4 216 0 3 1311 542 223 107 17 chr6 95169192 95169370 -54347667 - B2_Mm2 SINE B2 -1 194 1 3 1311 390 235 0 12 chr6 95170118 95170200 -54346837 - ID4_ SINE ID -1 82 2 3 1311 2479 247 69 81 chr6 95170231 95171116 -54345921 + Lx9 LINE L1 6770 7643 -1 3 1311 401 202 12 37 chr6 95171241 95171323 -54345714 - ID4_ SINE ID -1 82 3 3 1311 314 320 87 54 chr6 95171400 95171585 -54345452 - L2a LINE L2 0 3426 3236 3 1311 200 86 0 28 chr6 95171586 95171622 -54345415 + (TTATA)n Simple_repeat Simple_repeat 5 39 0 3 1311 24 0 0 0 chr6 95171647 95171671 -54345366 + AT_rich Low_complexity Low_complexity 1 24 0 3 1311 24 0 0 0 chr6 95172772 95172796 -54344241 + AT_rich Low_complexity Low_complexity 1 24 0 3 1311 237 394 22 14 chr6 95172924 95173063 -54343974 - MIRb SINE MIR -30 238 99 3 1311 740 253 129 0 chr6 95173218 95173404 -54343633 - B3 SINE B2 -1 215 6 3 1311 198 0 0 0 chr6 95174131 95174153 -54342884 + (TAGA)n Simple_repeat Simple_repeat 1 22 0 3 1311 249 389 82 56 chr6 95175579 95175846 -54341191 + LTR16E1 LTR ERVL 222 495 -43 3 1311 1537 193 41 87 chr6 95176114 95176506 -54340531 - ORR1D1 LTR MaLR 0 374 1 3 1311 27 29 0 0 chr6 95177764 95177798 -54339239 + AT_rich Low_complexity Low_complexity 1 34 0 3 1311 400 18 35 0 chr6 95177895 95177952 -54339085 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1311 217 333 113 60 chr6 95178610 95178626 -54338411 - RSINE1 SINE B4 -6 159 146 3 1311 378 42 0 0 chr6 95178626 95178674 -54338363 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1311 396 0 0 0 chr6 95178674 95178717 -54338320 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1311 217 333 113 60 chr6 95178717 95178849 -54338188 - RSINE1 SINE B4 -20 145 3 3 1311 221 280 53 13 chr6 95180580 95180656 -54336381 + MIR SINE MIR 88 166 -96 3 1311 8939 15 1 0 chr6 95180671 95181881 -54335156 - L1Md_A LINE L1 0 6582 5371 3 1311 626 283 92 5 chr6 95182050 95182256 -54334781 - B4A SINE B4 -66 226 3 3 1311 261 324 0 0 chr6 95183082 95183153 -54333884 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 3 1311 769 262 10 72 chr6 95183158 95183351 -54333686 - ID_B1 SINE B4 -24 200 20 3 1311 319 340 30 18 chr6 95183697 95183862 -54333175 - MIRb SINE MIR -24 244 78 3 1311 492 330 51 23 chr6 95184016 95184233 -54332804 + MIRb SINE MIR 5 227 -41 3 1311 250 261 95 43 chr6 95185189 95185305 -54331732 - MIRb SINE MIR -66 196 75 3 1311 746 284 135 11 chr6 95185388 95185648 -54331389 - B4A SINE B4 0 292 1 3 1311 425 318 0 96 chr6 95185651 95185804 -54331233 - L1MEc LINE L1 -3824 2495 2364 3 1311 835 234 128 0 chr6 95185804 95185992 -54331045 - B3 SINE B2 -3 213 2 3 1311 425 318 0 96 chr6 95185992 95186057 -54330980 - L1MEc LINE L1 -3956 2363 2299 3 1311 2184 211 51 179 chr6 95186089 95186955 -54330082 - RLTR40 LTR ERVK -56 761 7 3 1311 419 286 253 31 chr6 95186955 95187114 -54329923 - L1MEc LINE L1 -4093 2307 2109 3 1311 2475 110 0 3 chr6 95187114 95187441 -54329596 + ORR1A3 LTR MaLR 1 326 0 3 1311 419 286 253 31 chr6 95187441 95187700 -54329337 - L1MEc LINE L1 -4292 2108 1796 3 1311 205 385 66 6 chr6 95188368 95188551 -54328486 - MIR SINE MIR -48 214 21 3 1311 711 132 17 33 chr6 95189539 95189719 -54327318 + CT-rich Low_complexity Low_complexity 4 180 0 3 1311 1150 96 0 17 chr6 95189729 95189910 -54327127 + (TCTCC)n Simple_repeat Simple_repeat 2 179 0 3 1311 1374 99 11 11 chr6 95191352 95191536 -54325501 - B2_Mm1t SINE B2 -8 185 2 3 1311 621 330 121 40 chr6 95191935 95192689 -54324348 + Zaphod DNA Tip100 223 1037 -2994 3 1311 209 313 0 0 chr6 95193136 95193203 -54323834 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1311 986 272 25 33 chr6 95193203 95193477 -54323560 - B4A SINE B4 0 292 21 3 1311 228 35 0 0 chr6 95194416 95194445 -54322592 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 3 1311 951 154 6 12 chr6 95194445 95194609 -54322428 - B2_Mm2 SINE B2 -32 163 1 3 1311 335 235 81 0 chr6 95195170 95195306 -54321731 - L1MD3 LINE L1 -173 7822 7676 3 1311 452 316 44 44 chr6 95195415 95195456 -54321581 - B4 SINE B4 -67 225 191 3 1311 441 0 0 0 chr6 95195456 95195505 -54321532 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1311 452 316 44 44 chr6 95195505 95195668 -54321369 - B4 SINE B4 -102 190 21 3 1311 783 218 96 6 chr6 95196600 95196757 -54320280 - B3A SINE B2 -27 171 1 3 1311 28 0 0 0 chr6 95196759 95196787 -54320250 + AT_rich Low_complexity Low_complexity 1 28 0 3 1311 673 302 45 16 chr6 95196828 95197074 -54319963 + L1M2 LINE L1 5342 5594 -706 3 1311 785 42 0 0 chr6 95197074 95197169 -54319868 + B1_Mm SINE Alu 36 130 -17 3 1311 755 284 75 32 chr6 95197900 95198180 -54318857 - B4 SINE B4 0 292 1 3 1311 233 292 88 59 chr6 95198781 95198883 -54318154 - PB1D10 SINE Alu -11 106 2 3 1311 870 153 0 0 chr6 95199582 95199719 -54317318 + ORR1D2 LTR MaLR 1 137 -233 3 1311 2875 156 62 14 chr6 95199730 95200231 -54316806 + RLTR12B LTR ERVK 1 525 -3 3 1311 3400 76 0 0 chr6 95200675 95201096 -54315941 + BGLII LTR ERVK 1 421 0 3 1311 554 143 12 7 chr6 95201501 95201624 -54315413 + RMER3D-int LTR ERVK 489 592 -2250 3 1311 1326 226 88 59 chr6 95201664 95202299 -54314738 + RMER3D-int LTR ERVK 1014 1679 -1163 3 1311 3410 180 135 11 chr6 95202318 95203230 -54313807 + MYSERV16_I-int LTR ERVK 1297 2321 -5 3 1311 2956 76 10 0 chr6 95203230 95203638 -54313399 + BGLII LTR ERVK 7 418 -3 3 1311 945 232 42 51 chr6 95204525 95204811 -54312226 + ORR1D2 LTR MaLR 93 370 0 3 1311 291 361 77 48 chr6 95205097 95205370 -54311667 + L2a LINE L2 2974 3254 -172 3 1311 254 273 125 29 chr6 95205937 95206073 -54310964 + L1M5 LINE L1 5723 5871 -253 3 1311 365 0 0 22 chr6 95207570 95207616 -54309421 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 3 1311 263 139 75 12 chr6 95208188 95208268 -54308769 + CT-rich Low_complexity Low_complexity 4 88 0 3 1311 579 210 17 22 chr6 95208326 95208506 -54308531 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 3 1311 1722 249 106 28 chr6 95208770 95209212 -54307825 + MT2A LTR ERVL 1 454 -79 3 1311 414 0 0 0 chr6 95209212 95209258 -54307779 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1311 396 0 0 0 chr6 95209258 95209301 -54307736 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1311 1722 249 106 28 chr6 95209301 95209350 -54307687 + MT2A LTR ERVL 455 529 -4 3 1311 708 259 7 14 chr6 95209574 95209715 -54307322 + B1_Mur1 SINE Alu 2 141 -8 3 1311 948 283 38 45 chr6 95210311 95210600 -54306437 + B4 SINE B4 1 287 -5 3 1311 213 121 0 0 chr6 95210619 95210652 -54306385 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 3 1311 271 323 33 94 chr6 95210706 95210887 -54306150 + MamRep137 DNA TcMar? 17 186 -258 3 1311 243 203 0 0 chr6 95211732 95211801 -54305236 + (TATG)n Simple_repeat Simple_repeat 4 72 0 3 1311 204 224 25 13 chr6 95211820 95211978 -54305059 + (TCTG)n Simple_repeat Simple_repeat 1 160 0 3 1311 301 233 17 0 chr6 95211940 95212056 -54304981 + (TATATG)n Simple_repeat Simple_repeat 5 122 0 3 1311 230 214 39 48 chr6 95212056 95212159 -54304878 - RLTR40 LTR ERVK -146 671 570 3 1311 309 206 0 0 chr6 95212173 95212275 -54304762 + (TG)n Simple_repeat Simple_repeat 2 103 0 3 1311 333 221 35 0 chr6 95212290 95212462 -54304575 + (TATG)n Simple_repeat Simple_repeat 1 178 0 3 1311 354 294 77 41 chr6 95212462 95212657 -54304380 - B3 SINE B2 -13 203 2 3 1311 570 223 129 24 chr6 95212823 95212993 -54304044 + L1MA6 LINE L1 6113 6300 0 3 1311 210 352 114 0 chr6 95213014 95213119 -54303918 + PB1D10 SINE Alu 1 117 0 3 1311 719 240 77 26 chr6 95213412 95213591 -54303446 + MTD LTR MaLR 5 184 -235 3 1311 297 0 0 0 chr6 95213697 95213730 -54303307 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1311 254 300 37 24 chr6 95214947 95215029 -54302008 - Tigger7 DNA MER2_type 0 2491 2409 3 1311 1316 331 85 25 chr6 95215028 95215496 -54301541 - Tigger7 DNA MER2_type -1884 607 100 3 1311 1275 256 81 12 chr6 95215496 95215840 -54301197 + ORR1D2 LTR MaLR 3 370 0 3 1311 1316 331 85 25 chr6 95215840 95215938 -54301099 - Tigger7 DNA MER2_type -2392 99 7 3 1311 528 93 0 0 chr6 95216115 95216190 -54300847 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 1311 288 268 145 61 chr6 95216317 95216448 -54300589 - B4 SINE B4 -148 144 3 4 1311 722 296 214 17 chr6 95216831 95217299 -54299738 - Lx9 LINE L1 -30 7614 7055 4 1311 1053 220 17 17 chr6 95217537 95217777 -54299260 + Lx8 LINE L1 6197 6436 -1037 4 1311 736 278 53 91 chr6 95217770 95218110 -54298927 + Lx9 LINE L1 6660 6986 -658 4 1311 21 36 0 0 chr6 95218146 95218174 -54298863 + AT_rich Low_complexity Low_complexity 1 28 0 4 1311 24 0 0 0 chr6 95220442 95220466 -54296571 + AT_rich Low_complexity Low_complexity 1 24 0 4 1311 360 0 0 0 chr6 95220879 95220919 -54296118 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1311 264 192 0 88 chr6 95222861 95222918 -54294119 + MIR SINE MIR 41 92 -176 4 1311 192 77 0 0 chr6 95223177 95223203 -54293834 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1311 1192 48 0 98 chr6 95223206 95223369 -54293668 - B1_Mm SINE Alu 0 147 1 4 1311 903 214 36 10 chr6 95223760 95223954 -54293083 + B4 SINE B4 5 203 -89 4 1311 363 23 0 0 chr6 95224029 95224073 -54292964 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1311 258 106 0 0 chr6 95224919 95224966 -54292071 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 4 1311 549 0 0 0 chr6 95224967 95225028 -54292009 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1311 314 263 42 0 chr6 95225551 95225646 -54291391 + RMER15 LTR ERVL 407 505 -70 4 1311 360 0 0 0 chr6 95226023 95226063 -54290974 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1311 213 194 0 0 chr6 95226377 95226413 -54290624 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1311 181 218 0 113 chr6 95226735 95226797 -54290240 - L4 LINE RTE -1691 338 284 4 1311 2149 193 0 55 chr6 95227197 95227597 -54289440 - ORR1C1 LTR MaLR 0 378 1 4 1311 297 282 72 38 chr6 95228144 95228308 -54288729 + L1M2 LINE L1 2376 2558 -3585 4 1311 2642 196 38 24 chr6 95228308 95228841 -54288196 + RLTR20B1 LTR ERVK 1 540 -23 4 1311 4131 292 80 62 chr6 95228842 95230024 -54287013 + L1M2 LINE L1 2548 3705 -2438 4 1311 201 39 0 0 chr6 95230024 95230050 -54286987 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1311 4131 292 80 62 chr6 95230050 95231563 -54285474 + L1M2 LINE L1 3706 5293 -850 4 1311 636 288 12 30 chr6 95231564 95231729 -54285308 + RSINE1 SINE B4 4 165 0 4 1311 201 333 0 41 chr6 95231729 95231826 -54285211 + (CATATA)n Simple_repeat Simple_repeat 1 93 0 4 1311 312 27 0 0 chr6 95231826 95231863 -54285174 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 4 1311 756 283 166 12 chr6 95231877 95232288 -54284749 + L1M2 LINE L1 5301 5774 -517 4 1311 405 70 0 0 chr6 95232289 95232346 -54284691 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1311 363 330 40 47 chr6 95233437 95233642 -54283395 + B4A SINE B4 3 209 -83 4 1311 1245 55 0 7 chr6 95233642 95233777 -54283260 + B1_Mm SINE Alu 2 136 -11 4 1311 288 70 0 0 chr6 95233777 95233820 -54283217 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1311 1245 55 0 7 chr6 95233820 95233831 -54283206 + B1_Mm SINE Alu 137 147 0 4 1311 302 342 93 56 chr6 95233831 95233894 -54283143 + B4 SINE B4 210 280 -12 4 1311 219 191 21 0 chr6 95233911 95233958 -54283079 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 4 1311 198 0 0 0 chr6 95234084 95234106 -54282931 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1311 259 402 57 0 chr6 95234796 95234918 -54282119 - MLT1L LTR MaLR -138 472 344 4 1311 1617 187 82 8 chr6 95235082 95235424 -54281613 - ORR1A3 LTR MaLR -8 359 1 4 1311 546 311 70 95 chr6 95235510 95235837 -54281200 + ORR1E LTR MaLR 1 319 -40 4 1311 510 61 0 0 chr6 95236345 95236411 -54280626 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1311 879 289 24 0 chr6 95237000 95237211 -54279826 + ID_B1 SINE B4 9 224 0 4 1311 186 43 0 0 chr6 95237736 95237759 -54279278 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1311 369 0 0 0 chr6 95237759 95237799 -54279238 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1311 602 294 55 12 chr6 95238078 95238333 -54278704 + L1MD3 LINE L1 7730 7995 0 4 1311 324 273 161 6 chr6 95238886 95239048 -54277989 - MIR SINE MIR -25 237 51 4 1311 189 0 0 0 chr6 95239080 95239101 -54277936 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1311 264 301 154 64 chr6 95239281 95239515 -54277522 - MIRb SINE MIR -7 261 7 4 1311 199 289 76 38 chr6 95239712 95239791 -54277246 + L2b LINE L2 3225 3306 -69 4 1311 1723 182 71 6 chr6 95239922 95240259 -54276778 + ORR1D1 LTR MaLR 11 369 -5 4 1311 690 217 357 34 chr6 95240901 95240989 -54276048 - B4A SINE B4 -5 287 73 4 1311 297 312 30 50 chr6 95240989 95241090 -54275947 - B1_Mur1 SINE Alu -36 113 15 4 1311 690 217 357 34 chr6 95241090 95241117 -54275920 - B4A SINE B4 -5 72 2 4 1311 535 300 117 23 chr6 95241596 95241852 -54275185 + RMER15 LTR ERVL 1 280 -295 4 1311 829 267 48 62 chr6 95241808 95242080 -54274957 + MTEb LTR MaLR 112 379 0 4 1311 854 200 111 0 chr6 95242341 95242521 -54274516 + Lx9 LINE L1 6458 6657 -987 4 1311 556 267 96 5 chr6 95242763 95242983 -54274054 - L1M4 LINE L1 -556 5618 5385 4 1311 368 40 20 0 chr6 95244520 95244570 -54272467 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 1311 236 301 36 12 chr6 95246879 95246963 -54270074 - L1M5 LINE L1 -510 5614 5529 4 1311 246 200 36 18 chr6 95247515 95247571 -54269466 + MER20 DNA MER1_type 12 68 -151 4 1311 982 195 4 121 chr6 95247705 95247962 -54269075 - RMER15 LTR ERVL -345 230 4 4 1311 510 243 149 22 chr6 95248048 95248229 -54268808 + L1MB2 LINE L1 5968 6171 0 4 1311 273 240 29 18 chr6 95249020 95249115 -54267922 - MTEa LTR MaLR -18 361 263 4 1311 402 21 0 0 chr6 95249416 95249463 -54267574 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1311 496 348 36 67 chr6 95249834 95249939 -54267098 + B4A SINE B4 1 108 -184 4 1311 2366 103 42 0 chr6 95249939 95250249 -54266788 - ORR1A2 LTR MaLR 0 327 5 4 1311 496 348 36 67 chr6 95250249 95250368 -54266669 + B4A SINE B4 109 218 -74 4 1311 465 19 0 0 chr6 95250438 95250492 -54266545 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1311 669 25 0 0 chr6 95250492 95250570 -54266467 + (CA)n Simple_repeat Simple_repeat 1 79 0 4 1311 1333 241 49 23 chr6 95250574 95250922 -54266115 - ORR1E LTR MaLR 0 359 3 4 1311 359 264 124 26 chr6 95251258 95251371 -54265666 + MLT1A1 LTR MaLR 285 408 0 4 1311 398 321 71 40 chr6 95252278 95252463 -54264574 + B4A SINE B4 43 234 -58 4 1311 351 0 0 0 chr6 95252463 95252502 -54264535 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 4 1311 398 321 71 40 chr6 95252502 95252514 -54264523 + B4A SINE B4 235 246 -46 4 1311 198 71 0 0 chr6 95252515 95252543 -54264494 + (GAAA)n Simple_repeat Simple_repeat 4 31 0 4 1311 32580 90 7 2 chr6 95253758 95259188 -54257849 - L1_Mus1 LINE L1 0 6567 1108 4 1311 638 202 20 145 chr6 95259199 95259448 -54257589 - L1_Mus1 LINE L1 -6012 604 387 4 1311 279 0 0 0 chr6 95259951 95259982 -54257055 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1311 245 256 23 68 chr6 95261270 95261358 -54255679 - MIRb SINE MIR -154 114 31 4 1311 307 378 34 7 chr6 95261940 95262089 -54254948 + MIR SINE MIR 52 204 -58 4 1311 387 41 0 0 chr6 95262266 95262315 -54254722 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1311 432 0 0 0 chr6 95262315 95262362 -54254675 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1311 186 103 0 0 chr6 95262490 95262519 -54254518 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1311 225 0 0 0 chr6 95263165 95263190 -54253847 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1311 2401 123 7 107 chr6 95264237 95264656 -54252381 - Lx2A LINE L1 0 7008 6632 4 1311 1128 241 63 8 chr6 95265604 95265872 -54251165 - B4A SINE B4 -8 284 2 4 1311 827 209 57 16 chr6 95266561 95266755 -54250282 - B4 SINE B4 -88 204 3 4 1311 447 309 98 19 chr6 95268212 95268426 -54248611 - LTR16C LTR ERVL -7 482 252 4 1311 1161 180 95 24 chr6 95268594 95268805 -54248232 + URR1A DNA MER1_type 1 226 0 4 1311 180 167 0 0 chr6 95269115 95269151 -54247886 + L2b LINE L2 3339 3374 -1 4 1311 1887 56 58 39 chr6 95269209 95269469 -54247568 + L1_Mus3 LINE L1 6367 6631 -7 4 1311 285 241 32 126 chr6 95269981 95270076 -54246961 - B1_Mur2 SINE Alu 0 120 35 4 1311 987 110 50 34 chr6 95270076 95270255 -54246782 + Lx4A LINE L1 6877 7058 0 4 1311 362 275 68 61 chr6 95270424 95270571 -54246466 - MIRc SINE MIR -68 200 50 4 1311 2297 266 54 45 chr6 95271142 95272027 -54245010 - Lx7 LINE L1 -1794 5902 5007 4 1311 280 188 26 74 chr6 95272263 95272347 -54244690 - L1_Rod LINE L1 -250 5627 5520 4 1311 1097 238 149 7 chr6 95272529 95272830 -54244207 - Lx7 LINE L1 -889 4991 4648 4 1311 707 263 159 17 chr6 95273285 95273600 -54243437 + MTEa LTR MaLR 1 343 -16 4 1311 409 291 57 92 chr6 95273745 95273972 -54243065 - LTR41B LTR ERVL -547 221 3 4 1311 192 158 0 0 chr6 95274274 95274312 -54242725 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1311 311 315 109 8 chr6 95274887 95275015 -54242022 + L1MB8 LINE L1 4757 4897 -1249 4 1311 783 280 170 36 chr6 95275035 95275881 -54241156 + L1MB8 LINE L1 4999 5959 -219 4 1311 463 272 300 26 chr6 95276169 95276539 -54240498 + RMER20B LTR ERVK 124 597 -30 4 1311 345 336 74 20 chr6 95277127 95277276 -54239761 - LTR16E1 LTR ERVL -161 377 221 4 1311 432 82 0 0 chr6 95277619 95277680 -54239357 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 1311 23 33 0 0 chr6 95279324 95279354 -54237683 + AT_rich Low_complexity Low_complexity 1 30 0 4 1311 3864 181 44 115 chr6 95279564 95279702 -54237335 - Lx7 LINE L1 0 7696 7568 4 1311 1379 89 5 5 chr6 95279702 95279895 -54237142 + B2_Mm1t SINE B2 1 193 0 4 1311 3864 181 44 115 chr6 95279895 95280718 -54236319 - Lx7 LINE L1 -129 7567 6804 4 1311 495 87 0 0 chr6 95282135 95282204 -54234833 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 1311 317 304 100 32 chr6 95282541 95282731 -54234306 + MER102b DNA MER1_type 129 331 -10 4 1311 250 184 20 0 chr6 95283143 95283192 -54233845 + MIR SINE MIR 213 262 0 4 1311 414 299 135 6 chr6 95284554 95284732 -54232305 - MER58A DNA MER1_type 0 224 24 4 1311 436 234 20 40 chr6 95284751 95284902 -54232135 - RMER30 DNA MER1_type -48 154 7 5 1311 7625 164 37 12 chr6 95286222 95289129 -54227908 + Lx5 LINE L1 4588 7050 0 5 1311 21 0 0 0 chr6 95289268 95289289 -54227748 + AT_rich Low_complexity Low_complexity 1 21 0 5 1312 801 176 0 72 chr6 95290005 95290213 -54226824 + B2_Mm2 SINE B2 1 193 -2 5 1312 240 35 0 0 chr6 95290853 95290882 -54226155 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1312 417 20 0 0 chr6 95290885 95290935 -54226102 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1312 413 285 7 46 chr6 95290936 95291087 -54225950 - RSINE1 SINE B4 -18 147 3 5 1312 309 352 73 48 chr6 95291303 95291509 -54225528 - LTR16B1 LTR ERVL -262 218 8 5 1312 1093 88 0 0 chr6 95292473 95292610 -54224427 - B1_Mus2 SINE Alu -9 138 2 5 1312 3455 37 7 0 chr6 95292748 95293155 -54223882 - L1Md_F2 LINE L1 -571 6011 5602 5 1312 4548 56 2 14 chr6 95293155 95293737 -54223300 + L1Md_F2 LINE L1 6008 6582 0 5 1312 25 31 0 0 chr6 95293847 95293879 -54223158 + AT_rich Low_complexity Low_complexity 1 32 0 5 1312 8545 136 51 7 chr6 95294016 95295814 -54221223 + Lx2 LINE L1 5095 6995 -2 5 1312 207 0 0 0 chr6 95295818 95295841 -54221196 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1312 210 183 14 27 chr6 95296369 95296442 -54220595 + CT-rich Low_complexity Low_complexity 4 75 0 5 1312 1030 157 183 0 chr6 95296517 95296708 -54220329 + URR1A DNA MER1_type 1 226 0 5 1312 1059 245 54 0 chr6 95296991 95297252 -54219785 + B4A SINE B4 1 275 -17 5 1312 327 104 0 0 chr6 95297270 95297318 -54219719 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1312 1123 69 7 0 chr6 95299181 95299326 -54217711 + B1_Mus1 SINE Alu 3 148 0 5 1312 438 250 91 39 chr6 95300857 95301065 -54215972 - L1M3 LINE L1 -1065 5075 4857 5 1312 1230 274 59 11 chr6 95301069 95301423 -54215614 - MTEa LTR MaLR -8 371 1 5 1312 513 289 87 4 chr6 95301423 95301652 -54215385 - L1M3 LINE L1 -1275 4865 4618 5 1312 916 268 107 43 chr6 95301689 95302407 -54214630 + L1MA9 LINE L1 5101 5870 -442 5 1312 743 211 0 20 chr6 95302407 95302557 -54214480 + B1_Mur4 SINE Alu 4 150 0 5 1312 904 278 148 59 chr6 95302557 95302770 -54214267 + L1MA9 LINE L1 5871 6120 -192 5 1312 222 171 0 41 chr6 95302786 95302859 -54214178 + (CATA)n Simple_repeat Simple_repeat 2 71 0 5 1312 273 266 84 28 chr6 95302898 95303041 -54213996 + L1MA9 LINE L1 6152 6302 -10 5 1312 2205 87 108 3 chr6 95303969 95304302 -54212735 + RLTR9A LTR ERVK 1 368 0 5 1312 1010 218 44 0 chr6 95304647 95304853 -54212184 - B3 SINE B2 0 216 2 5 1312 459 0 0 0 chr6 95304872 95304923 -54212114 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1312 279 0 0 0 chr6 95304923 95304953 -54212084 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1312 427 365 66 21 chr6 95305219 95305379 -54211658 + LTR33A LTR ERVL 14 185 -335 5 1312 1194 73 0 0 chr6 95305379 95305558 -54211479 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 1312 427 365 66 21 chr6 95305558 95305685 -54211352 + LTR33A LTR ERVL 186 314 -206 5 1312 202 356 30 65 chr6 95306907 95307108 -54209929 + MIRc SINE MIR 73 266 -2 5 1312 267 267 93 0 chr6 95307641 95307716 -54209321 - ID4_ SINE ID 0 83 2 5 1312 387 341 21 14 chr6 95307731 95307871 -54209166 - B1F1 SINE Alu -8 141 1 5 1312 311 277 65 9 chr6 95307996 95308163 -54208874 + L1MC1 LINE L1 5237 5408 -2587 5 1312 507 286 46 61 chr6 95308207 95308514 -54208523 + L1MC1 LINE L1 5533 5852 -492 5 1312 700 304 53 50 chr6 95308534 95308835 -54208202 + MLT2D LTR ERVL 1 302 -112 5 1312 379 280 158 5 chr6 95308850 95309040 -54207997 + L1MC1 LINE L1 5943 6161 -183 5 1312 523 181 0 11 chr6 95310456 95310551 -54206486 - ID_B1 SINE B4 -40 184 91 5 1312 1618 200 44 32 chr6 95310923 95311519 -54205518 + L1_Rod LINE L1 752 1425 -4422 5 1312 216 0 0 0 chr6 95313042 95313066 -54203971 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1312 301 290 97 34 chr6 95313238 95313445 -54203592 - L2b LINE L2 0 3426 3200 5 1312 440 48 16 0 chr6 95313445 95313508 -54203529 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1312 691 291 24 29 chr6 95313580 95313789 -54203248 - B4A SINE B4 0 292 85 5 1312 3639 84 4 10 chr6 95313789 95314271 -54202766 - L1Md_F2 LINE L1 -12 6570 6092 5 1312 1931 180 130 41 chr6 95314696 95315164 -54201873 - RMER20B LTR ERVK -104 523 14 5 1312 225 297 125 11 chr6 95315437 95315621 -54201416 - L2b LINE L2 -276 3150 2946 5 1312 327 246 67 17 chr6 95315715 95315835 -54201202 - L2b LINE L2 -623 2796 2671 5 1312 306 193 0 0 chr6 95316123 95316180 -54200857 + ID SINE ID 4 60 -164 5 1312 643 263 88 107 chr6 95316210 95316538 -54200499 - RMER2 LTR ERV1 -16 551 230 5 1312 269 233 33 0 chr6 95316552 95316612 -54200425 - RMER2 LTR ERV1 -505 62 1 5 1312 540 244 35 0 chr6 95316612 95316727 -54200310 + ID_B1 SINE B4 96 214 -10 5 1312 717 183 0 0 chr6 95316738 95316891 -54200146 + GA-rich Low_complexity Low_complexity 2 154 0 5 1312 985 281 36 44 chr6 95317750 95318115 -54198922 - MTEa LTR MaLR 0 379 18 5 1312 383 0 21 0 chr6 95318532 95318579 -54198458 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1312 1280 250 3 3 chr6 95318611 95318908 -54198129 - L1_Rod LINE L1 0 5847 5551 5 1312 299 217 0 0 chr6 95319004 95319073 -54197964 - L1_Mur3 LINE L1 -720 5160 5091 5 1312 549 290 31 35 chr6 95319066 95319327 -54197710 - L1_Mur3 LINE L1 -1392 4488 4229 5 1312 510 79 0 0 chr6 95319330 95319406 -54197631 + (GTTTG)n Simple_repeat Simple_repeat 4 79 0 5 1312 443 260 106 0 chr6 95319416 95319539 -54197498 - Lx8 LINE L1 -311 7162 7027 5 1312 600 14 0 0 chr6 95320835 95320904 -54196133 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1312 2173 256 131 40 chr6 95320992 95322080 -54194957 - L1MC3 LINE L1 0 7785 6598 5 1312 293 93 0 18 chr6 95322082 95322137 -54194900 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1312 215 173 0 19 chr6 95322181 95322234 -54194803 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1312 1049 261 57 11 chr6 95322234 95322513 -54194524 - B4 SINE B4 0 292 1 5 1312 255 313 142 0 chr6 95322514 95322648 -54194389 - L1MC3 LINE L1 -1176 6609 6457 5 1312 295 281 78 9 chr6 95323687 95323802 -54193235 - MLT1G1 LTR MaLR -2 577 455 5 1312 188 250 0 0 chr6 95324680 95324720 -54192317 - L2b LINE L2 -23 3352 3313 5 1312 243 347 24 16 chr6 95325092 95325215 -54191822 + MLT1E1 LTR MaLR 529 652 -2 5 1312 351 0 0 0 chr6 95325364 95325403 -54191634 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1312 311 340 88 69 chr6 95325503 95325765 -54191272 - B4 SINE B4 -24 268 2 5 1312 660 287 124 11 chr6 95326854 95327129 -54189908 + MER2 DNA MER2_type 2 307 -38 5 1312 333 118 0 0 chr6 95328739 95328790 -54188247 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1312 223 154 0 0 chr6 95328791 95328830 -54188207 + GA-rich Low_complexity Low_complexity 2 40 0 5 1312 572 101 0 11 chr6 95328859 95328949 -54188088 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 1312 571 256 15 0 chr6 95329548 95329685 -54187352 + B3A SINE B2 13 151 -47 5 1312 351 0 0 0 chr6 95329697 95329736 -54187301 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1312 755 276 6 0 chr6 95329744 95329925 -54187112 + B3 SINE B2 27 208 -8 5 1312 284 348 36 22 chr6 95330793 95330931 -54186106 + Lx8 LINE L1 7153 7292 -181 5 1312 285 29 0 0 chr6 95331068 95331102 -54185935 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1312 207 0 0 0 chr6 95331102 95331124 -54185913 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1312 1205 168 228 90 chr6 95331424 95331770 -54185267 + ORR1B1 LTR MaLR 1 394 0 5 1312 1486 244 61 24 chr6 95332353 95332860 -54184177 - RLTR11A2 LTR ERVK -1 526 1 5 1312 313 369 53 15 chr6 95333144 95333276 -54183761 + B1F SINE Alu 2 138 -11 5 1312 759 105 0 0 chr6 95334615 95334748 -54182289 + (TCTA)n Simple_repeat Simple_repeat 4 136 0 5 1312 25 31 0 0 chr6 95334750 95334782 -54182255 + AT_rich Low_complexity Low_complexity 1 32 0 5 1312 328 208 19 0 chr6 95334789 95334895 -54182142 + GA-rich Low_complexity Low_complexity 1 108 0 5 1312 233 327 83 74 chr6 95334911 95335248 -54181789 - RMER10A LTR ERVL -91 351 12 5 1312 562 303 60 44 chr6 95335775 95336210 -54180827 - L1_Rod LINE L1 -314 5533 5092 5 1312 617 277 103 14 chr6 95336225 95336507 -54180530 + Lx7 LINE L1 5603 5909 -1787 5 1312 789 11 0 0 chr6 95337410 95337500 -54179537 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 5 1312 1425 297 97 34 chr6 95338248 95338813 -54178224 - Tigger7 DNA MER2_type -1885 606 6 5 1312 188 343 55 45 chr6 95338967 95339077 -54177960 - MIRb SINE MIR -42 226 116 5 1312 456 270 45 0 chr6 95339343 95339454 -54177583 - B1F2 SINE Alu -13 136 21 5 1312 180 0 0 0 chr6 95339967 95339987 -54177050 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1312 198 250 0 0 chr6 95340096 95340152 -54176885 + GA-rich Low_complexity Low_complexity 1 56 0 5 1312 707 103 16 69 chr6 95340147 95340335 -54176702 + G-rich Low_complexity Low_complexity 3 180 0 5 1312 432 192 0 0 chr6 95340335 95340353 -54176684 + polypurine Low_complexity Low_complexity 1 18 0 5 1312 1265 78 6 0 chr6 95340353 95340532 -54176505 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1312 432 192 0 0 chr6 95340532 95340586 -54176451 + polypurine Low_complexity Low_complexity 19 72 0 5 1312 528 16 0 0 chr6 95340642 95340703 -54176334 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1312 1385 251 53 23 chr6 95343191 95343590 -54173447 - Lx6 LINE L1 -179 7281 6871 5 1312 1279 237 87 8 chr6 95343984 95344350 -54172687 - L1_Rod LINE L1 -8 5839 5445 5 1312 1635 255 55 95 chr6 95344354 95344755 -54172282 - L1_Rod LINE L1 -626 5221 4825 5 1312 408 20 0 0 chr6 95344755 95344804 -54172233 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1312 1635 255 55 95 chr6 95344804 95345321 -54171716 - L1_Rod LINE L1 -1023 4824 4339 5 1312 273 57 0 0 chr6 95345491 95345526 -54171511 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1312 963 229 28 28 chr6 95345557 95345773 -54171264 + B3 SINE B2 1 216 0 5 1312 262 361 40 23 chr6 95346017 95346190 -54170847 + Charlie8 DNA MER1_type 42 217 -2211 5 1312 1206 148 29 1 chr6 95346511 95346744 -54170293 - ORR1B2 LTR MaLR 0 394 148 5 1312 274 324 83 28 chr6 95346734 95346950 -54170087 - LTR16A1 LTR ERVL -23 433 206 5 1312 332 244 72 109 chr6 95348183 95348376 -54168661 - L1MDa LINE L1 -2934 3603 3418 5 1312 582 294 59 48 chr6 95348459 95348935 -54168102 - L1MDa LINE L1 -3351 3186 2706 5 1312 964 282 123 24 chr6 95348944 95349619 -54167418 - L1MB7 LINE L1 -7 6177 5436 5 1312 1651 285 43 4 chr6 95349617 95350152 -54166885 + Lx8 LINE L1 6760 7315 -158 6 1312 362 263 53 67 chr6 95350296 95350682 -54166355 - L1MB7 LINE L1 -859 5441 5061 5 1312 669 236 0 0 chr6 95350700 95350840 -54166197 - ID_B1 SINE B4 0 224 85 6 1312 3769 286 60 60 chr6 95350982 95352163 -54164874 - Lx5 LINE L1 -31 7019 5827 6 1312 243 0 0 0 chr6 95352163 95352190 -54164847 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1312 3769 191 55 19 chr6 95352190 95353020 -54164017 - Lx5 LINE L1 -51 5826 4971 6 1312 5976 176 54 207 chr6 95353009 95353713 -54163324 - Lx5 LINE L1 -2004 3873 3280 6 1312 1412 223 72 27 chr6 95353713 95354163 -54162874 - RLTR1 LTR ERV1 0 624 66 6 1312 5976 176 54 207 chr6 95354163 95355610 -54161427 - Lx5 LINE L1 -2004 3279 2058 6 1312 270 56 0 0 chr6 95355610 95355646 -54161391 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1312 5976 224 63 118 chr6 95355646 95357636 -54159401 - Lx5 LINE L1 -3823 2057 59 6 1312 442 291 25 42 chr6 95357646 95357886 -54159151 - L1MDa LINE L1 -4268 2365 2130 5 1312 221 282 49 14 chr6 95358020 95358114 -54158923 - B1_Mur4 SINE Alu -52 98 1 6 1312 559 286 92 22 chr6 95358142 95358513 -54158524 - L1MDa LINE L1 -4725 1908 1512 5 1312 449 265 144 28 chr6 95358686 95359082 -54157955 - L1MDa LINE L1 -5063 1477 1025 5 1312 1828 251 62 35 chr6 95359100 95359757 -54157280 + Lx9 LINE L1 6181 6855 -789 6 1312 34566 30 7 43 chr6 95359755 95360736 -54156301 + L1Md_T LINE L1 415 1360 -4523 6 1312 1287 20 0 0 chr6 95360736 95360889 -54156148 + B2_Mm1a SINE B2 2 154 -39 6 1312 432 0 0 0 chr6 95360889 95360937 -54156100 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 6 1312 34566 16 4 37 chr6 95360937 95365158 -54151879 + L1Md_T LINE L1 1361 5586 -297 6 1312 8409 36 0 0 chr6 95365158 95366154 -54150883 + L1Md_T LINE L1 5587 6582 0 6 1312 1482 269 67 70 chr6 95366161 95366890 -54150147 + Lx9 LINE L1 6843 7569 -75 6 1312 306 0 0 0 chr6 95367655 95367689 -54149348 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 6 1312 752 122 0 8 chr6 95367690 95367814 -54149223 + (TTCCC)n Simple_repeat Simple_repeat 4 126 0 6 1312 231 312 82 77 chr6 95367814 95367832 -54149205 - B4A SINE B4 -46 246 216 6 1312 736 201 21 7 chr6 95367832 95367843 -54149194 - B1_Mus2 SINE Alu 0 147 136 6 1312 354 45 0 0 chr6 95367843 95367887 -54149150 + (TTGG)n Simple_repeat Simple_repeat 1 44 0 6 1312 736 201 21 7 chr6 95367887 95368020 -54149017 - B1_Mus2 SINE Alu -12 135 2 6 1312 396 205 88 56 chr6 95368087 95368247 -54148790 - L1MDa LINE L1 -6280 353 189 5 1312 1194 263 138 2 chr6 95368937 95369474 -54147563 - L1M2 LINE L1 -2422 3721 3112 6 1312 21 57 0 0 chr6 95370431 95370466 -54146571 + AT_rich Low_complexity Low_complexity 1 35 0 6 1312 7467 62 5 6 chr6 95370555 95372180 -54144857 - L1Md_F2 LINE L1 0 6582 4956 6 1312 14160 77 11 7 chr6 95372176 95374825 -54142212 - L1Md_F2 LINE L1 -2700 3183 523 6 1312 1638 161 7 23 chr6 95375195 95375740 -54141297 - RLTR1C LTR ERV1 0 605 1 6 1312 735 300 86 59 chr6 95375746 95375992 -54141045 + ORR1D2 LTR MaLR 56 310 -60 6 1312 1295 152 4 70 chr6 95375992 95376233 -54140804 + URR1A DNA MER1_type 1 225 -1 6 1312 735 300 86 59 chr6 95376233 95376276 -54140761 + ORR1D2 LTR MaLR 311 353 -17 6 1312 222 171 0 0 chr6 95376276 95376317 -54140720 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1312 767 319 124 16 chr6 95376325 95376895 -54140142 + Lx8 LINE L1 6810 7441 -32 6 1312 21 36 0 0 chr6 95377855 95377883 -54139154 + AT_rich Low_complexity Low_complexity 1 28 0 6 1312 691 314 30 75 chr6 95378346 95378611 -54138426 - B4 SINE B4 -5 287 35 6 1312 2173 109 28 15 chr6 95378659 95378984 -54138053 - ORR1A4 LTR MaLR 0 329 1 6 1312 1217 248 84 14 chr6 95379484 95379828 -54137209 + ORR1D2 LTR MaLR 3 370 0 6 1312 354 265 0 38 chr6 95379886 95379992 -54137045 + PB1D10 SINE Alu 1 102 -15 6 1312 1031 230 14 0 chr6 95380060 95380273 -54136764 + B3 SINE B2 1 216 0 6 1312 293 336 50 36 chr6 95380354 95380493 -54136544 + LTR33 LTR ERVL 28 168 -347 6 1312 621 307 28 0 chr6 95380567 95380746 -54136291 + LTR33 LTR ERVL 326 509 -6 6 1312 310 319 24 40 chr6 95381200 95381324 -54135713 + LTR16A LTR ERVL 324 445 -6 6 1312 24 91 0 0 chr6 95381332 95381398 -54135639 + AT_rich Low_complexity Low_complexity 1 66 0 6 1312 290 340 68 15 chr6 95381769 95381943 -54135094 + B4 SINE B4 91 281 -11 6 1312 542 216 0 6 chr6 95381961 95382133 -54134904 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 1312 1741 172 20 3 chr6 95382270 95382574 -54134463 + RLTR27 LTR ERVK 1 309 0 6 1312 8172 73 2 16 chr6 95383084 95384295 -54132742 - Lx3A LINE L1 -1045 5936 4745 6 1312 7667 84 8 6 chr6 95384296 95385343 -54131694 + Lx3_Mus LINE L1 5961 7009 0 6 1312 663 120 0 0 chr6 95385617 95385725 -54131312 + (GGAA)n Simple_repeat Simple_repeat 2 109 0 6 1312 572 260 0 8 chr6 95385732 95385860 -54131177 + B1F SINE Alu 1 127 -22 6 1312 227 258 32 0 chr6 95385827 95385889 -54131148 + B1_Mm SINE Alu 64 127 -20 6 1312 776 240 50 10 chr6 95386515 95386717 -54130320 - B3 SINE B2 -2 214 5 6 1312 263 244 49 0 chr6 95386866 95386948 -54130089 + L1M5 LINE L1 5531 5616 -563 6 1312 238 284 50 91 chr6 95386994 95387063 -54129974 + L1MB5 LINE L1 5764 5829 -345 6 1312 1146 48 0 33 chr6 95387063 95387200 -54129837 + B1_Mus2 SINE Alu 1 136 -11 6 1312 207 0 0 0 chr6 95387200 95387223 -54129814 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1312 1146 48 0 33 chr6 95387223 95387237 -54129800 + B1_Mus2 SINE Alu 137 147 0 6 1312 238 284 50 91 chr6 95387237 95387388 -54129649 + L1MB5 LINE L1 5830 5975 -199 6 1312 461 293 122 24 chr6 95387410 95387623 -54129414 + Lx8 LINE L1 7231 7464 -9 6 1312 428 312 16 36 chr6 95388120 95388313 -54128724 + B3A SINE B2 1 189 -9 6 1312 198 0 0 0 chr6 95388336 95388358 -54128679 + (TC)n Simple_repeat Simple_repeat 2 23 0 6 1312 225 0 0 0 chr6 95388358 95388382 -54128655 + (TA)n Simple_repeat Simple_repeat 2 26 0 6 1312 762 264 10 30 chr6 95388943 95389142 -54127895 - B4 SINE B4 0 292 98 6 1312 1087 327 100 34 chr6 95389337 95390008 -54127029 - Lx8 LINE L1 -2 7471 6757 6 1312 342 342 0 0 chr6 95390230 95390391 -54126646 + L1MA7 LINE L1 2128 2288 -3855 6 1312 540 367 15 20 chr6 95390402 95390605 -54126432 + B4A SINE B4 89 290 -2 6 1312 2177 305 48 27 chr6 95390646 95392021 -54125016 + L1MA7 LINE L1 2623 4074 -2069 6 1312 5121 140 35 19 chr6 95392024 95392907 -54124130 + RMER19B LTR ERVK 1 897 -5 6 1312 238 291 95 26 chr6 95392916 95393130 -54123907 + L1MA7 LINE L1 4059 4311 -1829 6 1312 252 261 0 54 chr6 95393321 95393414 -54123623 - Lx8 LINE L1 -2 7471 7384 6 1312 381 263 0 0 chr6 95393442 95393617 -54123420 + (TG)n Simple_repeat Simple_repeat 1 175 0 6 1312 447 253 72 33 chr6 95393710 95393890 -54123147 + L1MA7 LINE L1 5067 5253 -890 6 1312 432 0 0 0 chr6 95393890 95393938 -54123099 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1312 601 287 62 88 chr6 95393970 95394230 -54122807 + B4A SINE B4 27 279 -13 6 1312 279 0 0 0 chr6 95394235 95394266 -54122771 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1312 351 96 0 0 chr6 95394325 95394377 -54122660 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1312 529 294 254 32 chr6 95394479 95394923 -54122114 + L1MA7 LINE L1 5357 5898 -393 6 1312 6022 67 1 16 chr6 95395390 95396181 -54120856 + L1Md_F2 LINE L1 5801 6579 -3 6 1312 296 304 81 32 chr6 95396908 95397129 -54119908 - Lx9 LINE L1 -1536 6108 5877 6 1312 379 205 121 57 chr6 95397147 95397271 -54119766 + B1F2 SINE Alu 6 137 -11 6 1312 925 205 52 13 chr6 95397293 95397525 -54119512 - L1_Rod LINE L1 -430 5417 5177 6 1312 617 73 10 0 chr6 95397526 95397622 -54119415 + (GA)n Simple_repeat Simple_repeat 2 98 0 6 1312 2264 219 56 64 chr6 95397634 95398317 -54118720 - Lx9 LINE L1 -8 5839 5163 6 1312 367 267 107 41 chr6 95398339 95398633 -54118404 + L1ME2 LINE L1 3714 4025 -2121 6 1312 207 0 0 0 chr6 95398851 95398874 -54118163 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1312 265 288 109 10 chr6 95398875 95399068 -54117969 + L1MD LINE L1 5039 5250 -896 6 1312 2850 182 93 26 chr6 95399127 95399974 -54117063 + RMER1B Other Other 257 1066 0 6 1312 496 322 94 21 chr6 95400132 95400296 -54116741 + L1ME2 LINE L1 5485 5657 -507 6 1312 240 86 0 0 chr6 95400296 95400331 -54116706 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1312 496 322 94 21 chr6 95400331 95400540 -54116497 + L1ME2 LINE L1 5658 5884 -280 6 1312 281 119 0 43 chr6 95400695 95400765 -54116272 + A-rich Low_complexity Low_complexity 1 67 0 6 1312 450 290 67 0 chr6 95400784 95401039 -54115998 + L1M4 LINE L1 2922 3193 -2953 6 1312 265 233 27 0 chr6 95401098 95401171 -54115866 + L1M4 LINE L1 3187 3261 -2885 6 1312 691 301 32 6 chr6 95401169 95401453 -54115584 + L1M4 LINE L1 3573 3849 -2294 6 1312 572 128 232 0 chr6 95401523 95401648 -54115389 - RMER19B LTR ERVK 0 902 749 6 1312 360 111 0 0 chr6 95401973 95402027 -54115010 + (GAAA)n Simple_repeat Simple_repeat 1 54 0 6 1312 3398 164 54 81 chr6 95402028 95402514 -54114523 - RMER19B LTR ERVK -132 770 258 6 1312 215 61 30 0 chr6 95402514 95402547 -54114490 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1312 3398 164 54 81 chr6 95402547 95402562 -54114475 - RMER19B LTR ERVK -645 257 245 6 1312 825 65 0 0 chr6 95402562 95402670 -54114367 + (TG)n Simple_repeat Simple_repeat 2 109 0 6 1312 3398 164 54 81 chr6 95402670 95402958 -54114079 - RMER19B LTR ERVK -658 244 2 6 1312 270 156 18 48 chr6 95402965 95403028 -54114009 + L1M4 LINE L1 3952 4012 -2134 6 1312 324 145 0 61 chr6 95403095 95403161 -54113876 + L1M4 LINE L1 4148 4209 -1937 6 1312 180 0 0 0 chr6 95403935 95403955 -54113082 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 6 1312 1414 164 0 8 chr6 95404067 95404313 -54112724 - RLTR12A LTR ERVK -324 244 1 6 1312 473 329 68 41 chr6 95404313 95404602 -54112435 - MLT1A LTR MaLR -77 297 1 6 1312 675 308 90 32 chr6 95405329 95405705 -54111332 - Charlie25 DNA MER1_type -699 1825 1428 6 1312 2947 263 49 17 chr6 95406408 95407223 -54109814 - Lx8 LINE L1 -292 7181 6341 6 1312 254 261 38 107 chr6 95407472 95407631 -54109406 - Charlie25 DNA MER1_type -2109 415 268 6 1312 395 319 175 17 chr6 95408874 95409258 -54107779 - MER21B LTR ERV1 -90 773 274 6 1312 659 246 103 41 chr6 95410021 95410216 -54106821 + ID_B1 SINE B4 6 212 -12 6 1312 249 33 0 0 chr6 95410217 95410247 -54106790 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1312 542 319 151 26 chr6 95410308 95410726 -54106311 - MLT1E1A LTR MaLR -210 470 1 6 1312 227 189 18 36 chr6 95410834 95410879 -54106158 + (CATA)n Simple_repeat Simple_repeat 4 49 0 6 1312 2120 98 72 0 chr6 95410879 95411184 -54105853 - ORR1A2 LTR MaLR 0 327 1 6 1312 227 189 18 36 chr6 95411184 95411193 -54105844 + (CATA)n Simple_repeat Simple_repeat 2 9 0 6 1312 710 236 61 0 chr6 95411617 95411765 -54105272 + B3A SINE B2 1 157 -41 6 1312 315 96 0 0 chr6 95411769 95411821 -54105216 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1312 315 0 0 0 chr6 95412370 95412405 -54104632 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1312 553 247 25 55 chr6 95412739 95412902 -54104135 + RLTR40 LTR ERVK 7 164 -653 6 1312 366 156 56 0 chr6 95412897 95412987 -54104050 - MTEb LTR MaLR -108 271 177 6 1312 964 195 5 28 chr6 95413283 95413494 -54103543 - B3 SINE B2 0 216 11 6 1312 207 261 0 0 chr6 95413678 95413724 -54103313 + C-rich Low_complexity Low_complexity 1 46 0 6 1312 307 273 74 61 chr6 95414428 95414576 -54102461 + MLT1H LTR MaLR 11 160 -389 6 1312 346 20 39 0 chr6 95414870 95414921 -54102116 + (TTA)n Simple_repeat Simple_repeat 2 54 0 6 1312 289 193 0 154 chr6 95415123 95415227 -54101810 + RSINE1 SINE B4 78 165 0 7 1312 337 332 51 15 chr6 95415643 95415839 -54101198 + LTR16A1 LTR ERVL 252 454 -2 7 1312 227 197 129 57 chr6 95416451 95416521 -54100516 + B4 SINE B4 218 292 0 7 1312 565 218 11 7 chr6 95416521 95416800 -54100237 + (CA)n Simple_repeat Simple_repeat 1 280 0 7 1312 266 246 0 8 chr6 95416832 95416963 -54100074 + (CA)n Simple_repeat Simple_repeat 2 131 0 7 1312 1058 159 69 9 chr6 95417075 95417291 -54099746 - MTC LTR MaLR -164 257 29 7 1312 259 347 20 20 chr6 95417293 95417440 -54099597 + L1MDa LINE L1 330 476 -6157 7 1312 292 301 75 46 chr6 95417860 95418034 -54099003 + L1MDa LINE L1 997 1175 -5458 7 1312 752 199 121 6 chr6 95418039 95418221 -54098816 - ID_B1 SINE B4 -12 212 10 7 1312 438 248 0 18 chr6 95418318 95418429 -54098608 - B3A SINE B2 -85 113 5 7 1312 399 328 56 67 chr6 95418433 95418789 -54098248 + L1MDa LINE L1 1312 1663 -4970 7 1313 1038 206 24 5 chr6 95420508 95420718 -54096319 + B3 SINE B2 1 214 -2 7 1313 260 333 111 0 chr6 95421881 95421998 -54095039 - MER58B DNA MER1_type -2 339 210 7 1313 23 33 0 0 chr6 95422086 95422116 -54094921 + AT_rich Low_complexity Low_complexity 1 30 0 7 1313 697 295 68 46 chr6 95422685 95422966 -54094071 + B4A SINE B4 4 290 -2 7 1313 999 139 0 0 chr6 95423237 95423417 -54093620 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 1313 1977 143 41 41 chr6 95425546 95425911 -54091126 + IAPLTR1_Mm LTR ERVK 1 365 -2 7 1313 4921 66 4 33 chr6 95425912 95426599 -54090438 + IAPEz-int LTR ERVK 3 662 -5819 7 1313 454 66 0 32 chr6 95426599 95426662 -54090375 + IAPEz-int LTR ERVK 1359 1419 -5062 7 1313 1876 111 4 4 chr6 95426651 95426913 -54090124 + IAPEz-int LTR ERVK 2236 2497 -5183 7 1313 953 80 24 0 chr6 95426908 95427033 -54090004 + IAPEz-int LTR ERVK 4783 4910 -2770 7 1313 21255 17 3 0 chr6 95427035 95429386 -54087651 + IAPEz-int LTR ERVK 4123 6481 0 7 1313 1817 123 3 87 chr6 95429386 95429742 -54087295 + IAPLTR1a_Mm LTR ERVK 1 326 -11 7 1313 948 226 5 0 chr6 95430119 95430314 -54086723 - B3 SINE B2 -19 197 2 7 1313 225 326 65 11 chr6 95430332 95430518 -54086519 - Lx8 LINE L1 0 7473 7278 7 1313 1702 195 60 16 chr6 95430743 95431124 -54085913 + RMER6D LTR ERVK 323 720 0 7 1313 266 351 67 7 chr6 95431154 95431303 -54085734 + MLT1J1 LTR MaLR 237 394 -50 7 1313 297 75 0 0 chr6 95431347 95431387 -54085650 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1313 787 218 106 25 chr6 95431387 95431585 -54085452 - B4 SINE B4 -77 215 2 7 1313 502 269 172 95 chr6 95431646 95432036 -54085001 + MLT1F2 LTR MaLR 36 472 -88 7 1313 279 0 0 0 chr6 95432687 95432718 -54084319 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1313 285 146 0 0 chr6 95434806 95434854 -54082183 + (TATG)n Simple_repeat Simple_repeat 4 51 0 7 1313 944 252 40 76 chr6 95434865 95435048 -54081989 - B4A SINE B4 0 292 117 7 1313 1161 42 0 0 chr6 95435048 95435191 -54081846 + (CAGCC)n Simple_repeat Simple_repeat 1 143 0 7 1313 944 252 40 76 chr6 95435191 95435308 -54081729 - B4A SINE B4 -176 116 3 7 1313 1023 286 43 0 chr6 95435800 95436080 -54080957 + MER58B DNA MER1_type 4 295 -46 7 1313 678 256 78 34 chr6 95436257 95436552 -54080485 + L1_Mur1 LINE L1 4304 4611 -1275 7 1313 1500 204 38 12 chr6 95436552 95436894 -54080143 - ORR1D1 LTR MaLR -21 353 3 7 1313 2412 226 29 42 chr6 95436895 95437545 -54079492 + L1_Rod LINE L1 4571 5212 -635 7 1313 514 281 7 7 chr6 95437828 95437964 -54079073 - B4A SINE B4 0 292 157 7 1313 369 276 179 36 chr6 95438617 95438869 -54078168 - Lx8 LINE L1 -84 7389 7102 7 1313 380 277 50 0 chr6 95439156 95439275 -54077762 - ID_B1 SINE B4 -24 200 76 7 1313 309 232 0 0 chr6 95439371 95439440 -54077597 + MLT1A1 LTR MaLR 336 404 -4 7 1313 351 367 55 15 chr6 95439691 95439890 -54077147 + MER58A DNA MER1_type 2 208 -16 7 1313 609 146 0 9 chr6 95441197 95441318 -54075719 - MTA_Mm LTR MaLR -301 120 1 7 1313 430 231 28 28 chr6 95442960 95443067 -54073970 + ID_B1 SINE B4 84 190 -34 7 1313 386 221 24 96 chr6 95443067 95443084 -54073953 + PB1D10 SINE Alu 3 117 0 7 1313 273 57 0 0 chr6 95443232 95443267 -54073770 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 1313 270 230 180 38 chr6 95443326 95443568 -54073469 + L1MA6 LINE L1 6017 6300 0 7 1313 277 337 0 10 chr6 95444674 95444773 -54072264 + (TG)n Simple_repeat Simple_repeat 1 98 0 7 1313 674 314 45 37 chr6 95444780 95445025 -54072012 - B4 SINE B4 -1 291 45 7 1313 809 334 105 28 chr6 95445989 95446729 -54070308 + Charlie1a DNA MER1_type 206 1002 -453 7 1313 422 234 55 34 chr6 95446766 95446912 -54070125 + B1F SINE Alu 1 149 0 7 1313 439 288 102 8 chr6 95447109 95447354 -54069683 + MER44A DNA MER2_type 7 274 -65 7 1313 1109 68 14 14 chr6 95448290 95448438 -54068599 + B1_Mus1 SINE Alu 1 148 0 7 1313 237 352 53 77 chr6 95448943 95449152 -54067885 + MIRb SINE MIR 17 220 -48 7 1313 287 328 95 0 chr6 95449806 95449922 -54067115 - MamRep137 DNA TcMar? -48 396 270 7 1313 285 319 55 0 chr6 95452563 95452654 -54064383 - Cheshire DNA MER1_type -2149 271 176 7 1313 402 57 0 0 chr6 95452909 95452962 -54064075 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 7 1313 559 233 158 22 chr6 95453248 95453432 -54063605 + B4A SINE B4 16 224 -68 7 1313 183 162 0 0 chr6 95453437 95453474 -54063563 + (ACTG)n Simple_repeat Simple_repeat 2 38 0 7 1313 422 18 18 0 chr6 95453587 95453642 -54063395 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1313 685 311 60 43 chr6 95454210 95454512 -54062525 - MER2 DNA MER2_type 0 345 39 7 1313 668 229 177 42 chr6 95455392 95455629 -54061408 + L1_Mur1 LINE L1 208 476 -6508 7 1313 27782 76 21 8 chr6 95455596 95459555 -54057482 + L1_Mur1 LINE L1 1124 5130 -756 7 1313 2776 139 50 2 chr6 95459555 95460017 -54057020 + Lx3A LINE L1 6488 6971 -10 7 1313 836 204 147 4 chr6 95460027 95460259 -54056778 - Lx9 LINE L1 -23 7621 7357 7 1313 1459 237 55 25 chr6 95461690 95462092 -54054945 - MTD LTR MaLR 0 419 6 7 1313 372 330 41 61 chr6 95462124 95462406 -54054631 + B4 SINE B4 29 281 -11 7 1313 1158 224 42 127 chr6 95462589 95462998 -54054039 + MTE2a LTR MaLR 5 378 -1 7 1313 299 253 12 12 chr6 95463753 95463833 -54053204 - B4A SINE B4 -19 273 194 7 1313 703 208 0 0 chr6 95463839 95463969 -54053068 - RSINE1 SINE B4 -33 132 3 7 1313 21 0 0 0 chr6 95464171 95464192 -54052845 + AT_rich Low_complexity Low_complexity 1 21 0 7 1313 347 0 23 0 chr6 95464944 95464987 -54052050 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1313 201 121 0 0 chr6 95465987 95466020 -54051017 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1313 295 221 0 14 chr6 95466020 95466089 -54050948 - Lx9 LINE L1 -167 7477 7410 7 1313 589 243 33 13 chr6 95466128 95466278 -54050759 - Lx9 LINE L1 -335 7309 7157 7 1313 453 81 0 0 chr6 95466282 95466344 -54050693 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 7 1313 726 164 47 27 chr6 95466345 95466495 -54050542 + Lx9 LINE L1 7323 7475 -169 7 1313 297 0 0 0 chr6 95466496 95466529 -54050508 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1313 481 213 0 90 chr6 95466530 95466664 -54050373 - Lx9 LINE L1 -513 7131 7010 7 1313 380 303 178 20 chr6 95467468 95467670 -54049367 + MLT1F1 LTR MaLR 192 449 -120 7 1313 264 297 21 117 chr6 95468159 95468223 -54048814 - B3A SINE B2 -7 191 142 7 1313 333 0 0 0 chr6 95468223 95468260 -54048777 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1313 264 297 21 117 chr6 95468260 95468340 -54048697 - B3A SINE B2 -57 141 61 7 1313 218 377 82 0 chr6 95469674 95469796 -54047241 + MIRb SINE MIR 69 200 -68 7 1313 221 219 105 11 chr6 95469852 95469964 -54047073 - MIR SINE MIR -71 191 69 7 1313 322 221 91 0 chr6 95470190 95470267 -54046770 + ID_B1 SINE B4 127 210 -14 7 1313 216 67 0 0 chr6 95470268 95470298 -54046739 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 7 1313 2999 34 40 3 chr6 95470492 95470844 -54046193 - RLTR10B2 LTR ERVK 0 365 1 7 1313 3214 182 52 42 chr6 95472363 95473001 -54044036 + Lx5 LINE L1 6407 7050 0 7 1313 234 0 0 0 chr6 95474066 95474092 -54042945 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 7 1313 513 0 0 0 chr6 95474827 95474884 -54042153 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 7 1313 677 258 67 34 chr6 95475228 95475525 -54041512 + MLT2B1 LTR ERVL 1 325 -139 7 1313 612 0 0 0 chr6 95475525 95475593 -54041444 + (CACAC)n Simple_repeat Simple_repeat 1 68 0 7 1313 296 316 141 58 chr6 95475593 95475722 -54041315 + MLT2B1 LTR ERVL 326 462 -2 7 1313 699 273 169 7 chr6 95475891 95476176 -54040861 - MTE2b LTR MaLR -44 335 5 7 1313 468 0 0 0 chr6 95478965 95479017 -54038020 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 7 1313 1033 73 66 0 chr6 95479017 95479153 -54037884 - B1_Mm SINE Alu -2 145 1 7 1313 336 48 0 0 chr6 95480153 95480195 -54036842 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1313 359 223 21 21 chr6 95480336 95480432 -54036605 + PB1D10 SINE Alu 22 117 0 7 1313 489 228 161 17 chr6 95481164 95481338 -54035699 - B3 SINE B2 -17 199 1 7 1313 549 0 0 0 chr6 95481478 95481539 -54035498 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1313 245 111 67 0 chr6 95481575 95481620 -54035417 + U5 snRNA snRNA 2 49 -67 7 1313 232 340 19 28 chr6 95482783 95482889 -54034148 - MLT1F2 LTR MaLR -447 113 9 7 1313 635 268 55 15 chr6 95482978 95483179 -54033858 - B3 SINE B2 -5 211 3 7 1313 322 286 8 48 chr6 95483659 95483784 -54033253 + ID_B1 SINE B4 84 203 -21 7 1313 223 147 0 227 chr6 95483697 95483794 -54033243 + PB1 SINE Alu 37 111 -16 7 1313 303 353 33 8 chr6 95484071 95484191 -54032846 + RMER5 LTR ERV1 203 325 -209 7 1313 269 324 29 10 chr6 95484252 95484355 -54032682 + RMER5 LTR ERV1 430 534 0 7 1313 291 263 95 0 chr6 95484398 95484493 -54032544 + MLT1F2 LTR MaLR 434 537 -23 7 1313 300 324 69 41 chr6 95484905 95485050 -54031987 + MER5A DNA MER1_type 7 155 -34 7 1313 251 54 0 26 chr6 95485984 95486022 -54031015 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1313 855 233 136 4 chr6 95486085 95486335 -54030702 - B4A SINE B4 -9 283 1 7 1313 210 71 0 0 chr6 95486440 95486468 -54030569 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 7 1313 336 83 0 0 chr6 95486865 95486913 -54030124 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1313 924 57 0 0 chr6 95488243 95488366 -54028671 - B1_Mus2 SINE Alu -1 146 24 8 1313 246 128 43 0 chr6 95488799 95488846 -54028191 - Lx9 LINE L1 -77 7567 7519 8 1313 216 0 0 0 chr6 95488848 95488872 -54028165 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1313 1067 179 84 17 chr6 95488877 95489115 -54027922 - Lx9 LINE L1 -179 7465 7212 8 1313 2393 178 40 15 chr6 95489114 95489570 -54027467 - Lx9 LINE L1 -597 7047 6581 8 1313 727 216 205 12 chr6 95489576 95489825 -54027212 - Lx9 LINE L1 -1166 6478 6182 8 1313 214 366 18 0 chr6 95489853 95489965 -54027072 - MIRb SINE MIR -40 228 115 8 1313 414 352 55 18 chr6 95490233 95490453 -54026584 + Tigger5 DNA MER2_type 15 242 -2164 8 1313 299 328 8 39 chr6 95490436 95490566 -54026471 + Tigger5 DNA MER2_type 2281 2406 0 8 1313 22 0 0 0 chr6 95490582 95490604 -54026433 + AT_rich Low_complexity Low_complexity 1 22 0 8 1313 915 0 0 121 chr6 95492521 95492720 -54024317 + (GGAAA)n Simple_repeat Simple_repeat 3 177 0 8 1313 702 0 15 144 chr6 95492720 95492766 -54024271 + polypurine Low_complexity Low_complexity 1 47 0 8 1313 1098 0 0 92 chr6 95492766 95492961 -54024076 + (GGAAA)n Simple_repeat Simple_repeat 1 177 0 8 1313 702 0 15 144 chr6 95492961 95493116 -54023921 + polypurine Low_complexity Low_complexity 48 176 0 8 1313 357 92 78 13 chr6 95493137 95493214 -54023823 + GA-rich Low_complexity Low_complexity 5 86 0 8 1313 1856 155 16 3 chr6 95493561 95493866 -54023171 + RLTR27 LTR ERVK 1 309 0 8 1313 362 302 23 93 chr6 95497014 95497229 -54019808 - MLT1J LTR MaLR -201 311 112 8 1313 288 0 0 0 chr6 95497579 95497611 -54019426 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1313 1226 54 0 0 chr6 95497611 95497758 -54019279 - B1_Mus2 SINE Alu 0 147 1 8 1313 210 37 0 0 chr6 95497937 95497964 -54019073 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1313 291 307 91 163 chr6 95498321 95498597 -54018440 + B4 SINE B4 32 287 -5 8 1313 450 303 65 0 chr6 95499265 95499420 -54017617 - MER20 DNA MER1_type -47 172 8 8 1313 299 257 58 0 chr6 95499613 95499720 -54017317 + PB1D7 SINE Alu 1 121 -6 8 1313 263 345 11 0 chr6 95500193 95500280 -54016757 - RSINE1 SINE B4 -23 142 55 1 1313 611 197 24 8 chr6 95500410 95500533 -54016504 + RSINE1 SINE B4 8 132 -33 2 1313 765 300 24 24 chr6 95501587 95501874 -54015163 - B4A SINE B4 -2 290 4 3 1313 182 343 0 0 chr6 95502898 95502968 -54014069 + MER5A DNA MER1_type 114 183 -6 4 1313 515 292 55 55 chr6 95503765 95504037 -54013000 - B4A SINE B4 -19 273 2 5 1313 279 0 0 0 chr6 95504051 95504082 -54012955 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1313 1075 71 43 0 chr6 95504341 95504482 -54012555 + B1_Mus1 SINE Alu 2 148 0 7 1313 378 282 168 92 chr6 95504823 95505139 -54011898 + MTE2b LTR MaLR 40 379 0 8 1313 585 287 14 7 chr6 95505751 95505895 -54011142 + RSINE1 SINE B4 8 152 -13 9 1313 853 245 16 5 chr6 95508214 95508407 -54008630 + ID_B1 SINE B4 5 199 -25 1 1313 362 344 32 5 chr6 95510300 95510487 -54006550 - MER5C1 DNA MER1_type 0 263 72 1 1313 314 329 0 122 chr6 95511211 95511367 -54005670 - B4A SINE B4 -155 137 1 1 1313 198 0 0 0 chr6 95511913 95511935 -54005102 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1313 208 182 0 22 chr6 95513614 95513659 -54003378 + A-rich Low_complexity Low_complexity 2 45 0 1 1313 225 0 0 0 chr6 95516694 95516719 -54000318 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1313 299 286 76 0 chr6 95517098 95517203 -53999834 + B1F SINE Alu 30 142 -7 1 1313 313 234 98 9 chr6 95517213 95517325 -53999712 + B2_Mm2 SINE B2 1 122 -73 1 1313 445 234 152 76 chr6 95518429 95518724 -53998313 + MTE2a LTR MaLR 1 379 0 1 1313 288 254 32 0 chr6 95518857 95518945 -53998092 + (CATG)n Simple_repeat Simple_repeat 1 90 0 1 1313 801 299 25 18 chr6 95518947 95519223 -53997814 - B4A SINE B4 -14 278 1 2 1313 285 143 62 16 chr6 95520283 95520347 -53996690 - L1MA9 LINE L1 -31 6281 6215 2 1313 275 250 67 92 chr6 95522071 95522190 -53994847 + PB1D10 SINE Alu 1 116 -11 2 1313 203 152 22 0 chr6 95522195 95522241 -53994796 + CT-rich Low_complexity Low_complexity 3 49 0 2 1313 322 354 55 66 chr6 95522275 95522547 -53994490 - ORR1E LTR MaLR -2 357 89 2 1313 236 323 0 0 chr6 95522629 95522691 -53994346 + MER21B LTR ERV1 26 87 -776 2 1313 337 267 42 33 chr6 95522897 95523017 -53994020 + MER21B LTR ERV1 614 734 -129 2 1313 294 29 0 0 chr6 95525408 95525443 -53991594 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1313 399 258 21 0 chr6 95526971 95527064 -53989973 - B4 SINE B4 -22 270 176 2 1313 680 245 10 72 chr6 95527729 95527936 -53989101 + B3A SINE B2 5 198 0 2 1313 480 18 0 0 chr6 95530421 95530478 -53986559 + (TATG)n Simple_repeat Simple_repeat 4 60 0 2 1313 218 398 0 11 chr6 95530524 95530613 -53986424 - PB1D10 SINE Alu -23 94 7 3 1313 458 306 37 49 chr6 95531202 95531444 -53985593 - B4 SINE B4 -35 257 26 3 1313 269 358 25 8 chr6 95532404 95532525 -53984512 - PB1 SINE Alu -3 124 2 3 1313 2509 159 73 19 chr6 95533774 95534486 -53982551 + RLTR13D2 LTR ERVK 5 1023 0 3 1313 509 250 50 100 chr6 95535060 95535220 -53981817 + RSINE1 SINE B4 4 155 -10 3 1313 413 299 7 15 chr6 95535307 95535443 -53981594 + MER2 DNA MER2_type 210 344 -1 3 1313 569 242 180 6 chr6 95536065 95536248 -53980789 + ID_B1 SINE B4 2 216 -8 3 1313 219 204 0 0 chr6 95536383 95536437 -53980600 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 3 1313 272 91 23 0 chr6 95536583 95536627 -53980410 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1313 335 145 14 0 chr6 95536669 95536738 -53980299 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1313 1033 210 132 10 chr6 95538119 95538436 -53978601 + MTEa LTR MaLR 20 379 0 4 1313 717 12 0 0 chr6 95538571 95538653 -53978384 + (GAGAA)n Simple_repeat Simple_repeat 4 85 0 4 1313 904 73 7 7 chr6 95538764 95538901 -53978136 + L1Md_F3 LINE L1 6447 6583 -1 4 1313 446 291 185 36 chr6 95539836 95540556 -53976481 + L1MD1 LINE L1 4345 5171 -975 4 1313 459 290 202 17 chr6 95540753 95541234 -53975803 + L1MD1 LINE L1 5363 5932 -310 4 1313 501 320 32 1 chr6 95541240 95541445 -53975592 + MLT1A0 LTR MaLR 13 233 -141 4 1313 26 0 0 0 chr6 95541553 95541579 -53975458 + AT_rich Low_complexity Low_complexity 1 26 0 4 1313 734 109 0 0 chr6 95541988 95542098 -53974939 + B1_Mus1 SINE Alu 2 111 -37 4 1313 252 122 0 0 chr6 95542281 95542322 -53974715 + (GGA)n Simple_repeat Simple_repeat 2 42 0 4 1313 358 253 12 0 chr6 95542419 95542502 -53974535 + ID_B1 SINE B4 134 217 -7 4 1313 201 94 0 0 chr6 95545073 95545105 -53971932 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 4 1313 824 269 94 34 chr6 95546769 95547035 -53970002 + B4A SINE B4 8 289 -3 5 1313 683 218 67 8 chr6 95549537 95549671 -53967366 + B1_Mur2 SINE Alu 1 142 -7 5 1313 2195 79 149 3 chr6 95550625 95550995 -53966042 - RLTR44E LTR ERVK -20 432 9 5 164 345 47 0 0 chr6 95551467 95551510 -53965527 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1314 216 0 0 0 chr6 95552574 95552598 -53964439 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 5 1314 891 240 82 29 chr6 95552693 95552938 -53964099 - MTEa LTR MaLR -106 273 16 5 1314 268 277 116 48 chr6 95553283 95553533 -53963504 - L1ME2z LINE L1 -146 6298 6032 5 1314 218 205 0 0 chr6 95553576 95553615 -53963422 + B4 SINE B4 45 83 -209 5 1314 388 284 49 0 chr6 95553683 95553785 -53963252 + ID_B1 SINE B4 105 211 -13 5 1314 237 108 0 0 chr6 95553854 95553891 -53963146 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 5 1314 1948 129 84 3 chr6 95555115 95555472 -53961565 + ORR1B1 LTR MaLR 1 386 -8 6 1314 480 291 116 16 chr6 95556656 95557011 -53960026 - L1_Rod LINE L1 -208 5639 5238 6 1314 328 205 203 8 chr6 95557013 95557131 -53959906 + L1MA4 LINE L1 5760 5900 -400 6 1314 806 241 157 70 chr6 95557571 95557915 -53959122 + MTE2a LTR MaLR 6 379 0 6 1314 656 318 6 17 chr6 95557989 95558165 -53958872 + B3A SINE B2 6 179 -19 6 1314 187 283 17 0 chr6 95558415 95558475 -53958562 + MIRc SINE MIR 82 142 -126 6 1314 315 0 0 0 chr6 95559809 95559844 -53957193 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1314 411 277 32 40 chr6 95559888 95560012 -53957025 - B4A SINE B4 -169 123 1 6 1314 430 285 279 26 chr6 95561117 95561418 -53955619 + ORR1E LTR MaLR 1 377 -2 6 1314 348 83 0 0 chr6 95561575 95561623 -53955414 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1314 212 138 16 94 chr6 95563573 95563637 -53953400 + PB1D10 SINE Alu 58 116 -1 7 1314 290 326 83 8 chr6 95563650 95563783 -53953254 - RSINE1 SINE B4 -5 160 18 7 1314 297 0 0 0 chr6 95563785 95563818 -53953219 + (TA)n Simple_repeat Simple_repeat 1 33 0 7 1314 476 261 71 16 chr6 95563836 95564019 -53953018 + L1MC1 LINE L1 6017 6209 -124 7 1314 286 312 54 47 chr6 95564178 95564326 -53952711 + B1F SINE Alu 1 149 0 7 1314 374 290 130 40 chr6 95564346 95564569 -53952468 + MLT1B LTR MaLR 11 253 -137 7 1314 527 264 150 81 chr6 95565319 95565579 -53951458 - B4 SINE B4 0 292 15 7 1314 359 293 0 0 chr6 95566092 95566191 -53950846 + B3A SINE B2 1 99 -99 7 1314 294 29 0 0 chr6 95566215 95566250 -53950787 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1314 194 250 104 13 chr6 95568616 95568693 -53948344 - L2a LINE L2 -19 3407 3324 7 1314 227 228 126 100 chr6 95568800 95568990 -53948047 + Lx9 LINE L1 7447 7641 -3 8 1314 393 372 59 34 chr6 95570598 95570837 -53946200 + MLT1-int LTR MaLR 940 1184 -187 8 1314 777 152 33 46 chr6 95571246 95571398 -53945639 - B1_Mur4 SINE Alu 0 150 1 8 1314 192 231 0 0 chr6 95572976 95573028 -53944009 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1314 355 70 0 66 chr6 95573052 95573113 -53943924 + RLTR11A2 LTR ERVK 3 59 -468 8 1314 331 270 80 7 chr6 95573182 95573320 -53943717 + B1F1 SINE Alu 1 148 -1 8 1314 940 228 169 20 chr6 95573371 95573725 -53943312 - MTD LTR MaLR 0 419 13 8 1314 2145 164 30 0 chr6 95574019 95574223 -53942814 - RLTR30 LTR ERV1 0 379 176 8 1314 234 0 0 0 chr6 95574223 95574249 -53942788 + (CTTG)n Simple_repeat Simple_repeat 1 26 0 8 1314 2145 164 30 0 chr6 95574249 95574410 -53942627 - RLTR30 LTR ERV1 -204 175 4 8 1314 258 193 0 0 chr6 95575575 95575632 -53941405 + (TA)n Simple_repeat Simple_repeat 1 57 0 8 1314 2352 244 70 30 chr6 95575666 95576295 -53940742 + Lx8 LINE L1 6477 7130 -343 9 1314 342 0 0 0 chr6 95576356 95576394 -53940643 + (GGAAA)n Simple_repeat Simple_repeat 5 42 0 9 1314 1148 163 118 5 chr6 95576905 95577108 -53939929 - URR1A DNA MER1_type 0 226 1 9 1314 2983 77 13 8 chr6 95577329 95577723 -53939314 + MTA_Mm LTR MaLR 1 396 0 9 1314 2183 181 42 2 chr6 95577739 95578144 -53938893 - MTC LTR MaLR 0 421 1 9 1314 516 222 33 25 chr6 95579876 95579996 -53937041 + B1_Mur1 SINE Alu 5 125 -24 9 1314 597 86 0 0 chr6 95579999 95580092 -53936945 + (TG)n Simple_repeat Simple_repeat 2 94 0 9 1314 600 237 66 0 chr6 95580098 95580250 -53936787 - B3A SINE B2 -34 164 3 9 1314 314 295 19 28 chr6 95580355 95580463 -53936574 + ID_B1 SINE B4 81 187 -37 9 1314 267 103 0 0 chr6 95580595 95580634 -53936403 + (TTG)n Simple_repeat Simple_repeat 2 40 0 9 1314 267 232 60 12 chr6 95581081 95581164 -53935873 + L2 LINE L2 2736 2822 -597 1 1314 540 358 11 46 chr6 95581217 95581501 -53935536 - MLT1E LTR MaLR 0 653 380 1 1314 362 291 137 17 chr6 95581522 95581697 -53935340 - MLT1E LTR MaLR -346 308 51 1 1314 292 213 256 7 chr6 95581782 95581919 -53935118 + B3 SINE B2 3 173 -43 1 1314 320 273 94 26 chr6 95581974 95582166 -53934871 + L1ME1 LINE L1 5689 5893 -286 1 1314 224 297 31 0 chr6 95582291 95582355 -53934682 + G-rich Low_complexity Low_complexity 5 70 0 1 1314 6071 40 4 0 chr6 95582385 95583109 -53933928 + L1Md_F2 LINE L1 5856 6582 0 1 1314 294 252 0 59 chr6 95584484 95584602 -53932435 + GA-rich Low_complexity Low_complexity 4 114 0 1 1314 287 330 26 9 chr6 95585761 95585874 -53931163 + B1F SINE Alu 18 132 -17 1 1314 261 0 0 0 chr6 95585886 95585915 -53931122 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1314 375 223 241 31 chr6 95586154 95586316 -53930721 - ID_B1 SINE B4 -4 220 25 1 1314 388 231 75 19 chr6 95586317 95586423 -53930614 - ID_B1 SINE B4 -8 216 105 1 1314 346 242 178 2 chr6 95588118 95588253 -53928784 - MTD LTR MaLR -15 406 247 1 1314 208 107 0 0 chr6 95588559 95588587 -53928450 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1314 230 136 23 0 chr6 95588603 95588647 -53928390 + (CATA)n Simple_repeat Simple_repeat 4 48 0 1 1314 257 151 19 0 chr6 95589457 95589510 -53927527 + GA-rich Low_complexity Low_complexity 3 56 0 1 1314 425 264 0 9 chr6 95593070 95593177 -53923860 + PB1D10 SINE Alu 2 107 -10 1 1314 347 304 102 54 chr6 95593296 95593331 -53923706 + B4 SINE B4 41 214 -77 1 1314 714 183 30 0 chr6 95593331 95593462 -53923575 + B1_Mus1 SINE Alu 2 136 -12 1 1314 181 0 0 65 chr6 95593463 95593494 -53923543 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1314 522 99 0 0 chr6 95594199 95594290 -53922747 + (TC)n Simple_repeat Simple_repeat 2 92 0 1 1314 351 0 0 0 chr6 95594290 95594329 -53922708 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1314 335 247 30 0 chr6 95595076 95595181 -53921856 + B1F2 SINE Alu 3 114 -6 1 1314 3794 225 78 19 chr6 95595232 95595710 -53921327 - Lx7 LINE L1 -1008 6688 6176 1 1314 375 23 0 0 chr6 95595710 95595754 -53921283 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1314 3794 225 78 19 chr6 95595754 95596267 -53920770 - Lx7 LINE L1 -1521 6175 5641 1 1314 4130 195 63 83 chr6 95596264 95596798 -53920239 + Lx7 LINE L1 6685 7242 -454 1 1314 1833 170 86 39 chr6 95596798 95597159 -53919878 - ORR1C1 LTR MaLR 0 378 1 1 1314 4130 195 63 83 chr6 95597159 95597657 -53919380 + Lx7 LINE L1 7243 7696 0 1 1314 405 284 17 8 chr6 95598951 95599068 -53917969 + RSINE1 SINE B4 25 142 -23 1 1314 351 0 0 0 chr6 95599072 95599111 -53917926 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1314 209 180 20 0 chr6 95599134 95599184 -53917853 + GA-rich Low_complexity Low_complexity 3 53 0 1 1314 507 206 46 9 chr6 95599236 95599344 -53917693 + B1_Mur1 SINE Alu 2 113 -36 1 1314 339 85 0 0 chr6 95601169 95601216 -53915821 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1314 217 151 18 36 chr6 95601227 95601282 -53915755 + A-rich Low_complexity Low_complexity 4 57 0 1 1314 234 0 0 0 chr6 95601928 95601954 -53915083 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1314 342 0 0 0 chr6 95602264 95602302 -53914735 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1314 318 223 63 11 chr6 95602311 95602406 -53914631 - RSINE1 SINE B4 -63 102 3 1 1314 304 319 185 14 chr6 95603279 95603425 -53913612 + ORR1E LTR MaLR 3 173 -186 1 1314 220 317 0 35 chr6 95603780 95603865 -53913172 + (CTTG)n Simple_repeat Simple_repeat 3 84 0 1 1314 614 273 65 15 chr6 95604244 95604445 -53912592 + ID_B1 SINE B4 14 224 0 1 1314 301 268 70 11 chr6 95604480 95604665 -53912372 + Charlie5 DNA MER1_type 2423 2618 -6 1 1314 279 263 53 0 chr6 95604939 95605015 -53912022 + PB1D10 SINE Alu 15 94 -23 1 1314 5777 200 89 36 chr6 95605801 95607229 -53909808 + Lx9 LINE L1 6140 7642 -2 1 1314 231 204 19 0 chr6 95607344 95607398 -53909639 + L1MC4a LINE L1 7740 7794 -88 1 1314 627 236 51 17 chr6 95607711 95607888 -53909149 - B3A SINE B2 -15 183 1 1 1314 26650 31 0 0 chr6 95608058 95613741 -53903296 + L1Md_T LINE L1 1 5589 -297 1 1314 9171 5 0 0 chr6 95613741 95614737 -53902300 + L1Md_T LINE L1 5590 6585 0 1 1314 27 0 0 0 chr6 95615722 95615749 -53901288 + AT_rich Low_complexity Low_complexity 1 27 0 1 1314 706 261 148 27 chr6 95616544 95616734 -53900303 + B4 SINE B4 4 214 -78 1 1314 411 21 0 0 chr6 95616734 95616782 -53900255 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1 1314 706 261 148 27 chr6 95616782 95616847 -53900190 + B4 SINE B4 215 289 -3 1 1314 214 271 17 0 chr6 95616876 95616935 -53900102 + (TATG)n Simple_repeat Simple_repeat 4 63 0 1 1314 346 225 51 51 chr6 95618068 95618185 -53898852 - Tigger7 DNA MER2_type -47 2444 2328 1 1314 842 119 0 0 chr6 95618283 95618409 -53898628 + B1_Mus1 SINE Alu 3 128 -20 1 1314 183 208 120 40 chr6 95618917 95618992 -53898045 - MIR3 SINE MIR -41 167 87 1 1314 235 366 37 0 chr6 95619840 95619922 -53897115 + B1F2 SINE Alu 13 97 -52 1 1314 230 245 61 70 chr6 95620027 95620141 -53896896 + L1MC LINE L1 5655 5767 -2115 1 1314 388 324 21 0 chr6 95620245 95620387 -53896650 + Tigger5 DNA MER2_type 2144 2288 -118 1 1314 502 267 157 39 chr6 95620435 95620665 -53896372 - B4 SINE B4 -8 284 28 1 1314 288 0 0 0 chr6 95621268 95621300 -53895737 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1314 1003 214 11 42 chr6 95621451 95621736 -53895301 + RMER19C LTR ERVK 319 879 -23 1 1314 228 318 94 8 chr6 95622675 95622802 -53894235 + MIR SINE MIR 125 262 0 1 1314 274 279 64 24 chr6 95623073 95623198 -53893839 - MIRc SINE MIR -118 150 21 1 1314 315 49 0 0 chr6 95623231 95623272 -53893765 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1314 429 257 82 41 chr6 95623359 95623554 -53893483 + B3 SINE B2 3 205 -11 1 1314 1149 79 0 0 chr6 95623744 95623884 -53893153 + B1_Mus2 SINE Alu 2 141 -6 1 1314 219 88 0 0 chr6 95623886 95623920 -53893117 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1314 269 182 150 38 chr6 95624320 95624400 -53892637 - B1F SINE Alu -1 148 60 1 1314 244 324 148 0 chr6 95624606 95624748 -53892289 - MIRb SINE MIR -66 202 40 1 1314 372 324 85 58 chr6 95625415 95625743 -53891294 + MLT1A0 LTR MaLR 29 365 0 1 1314 529 163 0 80 chr6 95626302 95626415 -53890622 + B1_Mur1 SINE Alu 34 137 -12 1 1314 243 0 0 0 chr6 95626415 95626442 -53890595 + (TAAAA)n Simple_repeat Simple_repeat 1 27 0 1 1314 296 279 154 13 chr6 95626525 95626674 -53890363 - MER58A DNA MER1_type -3 221 52 1 1314 372 271 76 0 chr6 95627187 95627305 -53889732 + ID_B1 SINE B4 90 216 -8 1 1314 855 242 132 26 chr6 95628092 95628449 -53888588 + MTEa LTR MaLR 5 355 -24 1 1314 333 0 0 0 chr6 95629797 95629834 -53887203 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1314 323 83 200 0 chr6 95630752 95630812 -53886225 + MLT1A1 LTR MaLR 269 340 -68 1 1314 572 254 152 53 chr6 95631065 95631348 -53885689 - MTEa LTR MaLR 0 379 69 1 1314 240 161 0 0 chr6 95631348 95631410 -53885627 + (CAGA)n Simple_repeat Simple_repeat 3 64 0 1 1314 754 251 131 15 chr6 95631779 95632038 -53884999 + B4A SINE B4 3 291 -1 1 1314 606 217 6 12 chr6 95632075 95632243 -53884794 + GA-rich Low_complexity Low_complexity 1 167 0 1 1314 442 229 173 74 chr6 95633218 95633449 -53883588 - MTEa LTR MaLR -119 260 7 1 1314 322 113 0 0 chr6 95633606 95633659 -53883378 - URR1A DNA MER1_type -93 133 81 1 1314 258 105 0 0 chr6 95634119 95634157 -53882880 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 1 1314 258 303 26 0 chr6 95634765 95634841 -53882196 - B3 SINE B2 -138 78 1 1 1314 855 247 65 85 chr6 95635248 95635695 -53881342 - RMER4A LTR ERVK -14 452 15 1 1314 508 340 13 6 chr6 95635871 95636028 -53881009 + MER58A DNA MER1_type 33 190 -34 1 1314 432 37 0 0 chr6 95636094 95636148 -53880889 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1314 1048 190 22 50 chr6 95636719 95636941 -53880096 - B3 SINE B2 0 216 1 1 1314 265 294 47 12 chr6 95637989 95638075 -53878962 + B1F2 SINE Alu 10 98 -51 1 1314 231 88 0 0 chr6 95638631 95638665 -53878372 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1314 192 77 0 0 chr6 95638685 95638711 -53878326 + (GGA)n Simple_repeat Simple_repeat 3 28 0 1 1314 345 93 0 0 chr6 95638712 95638766 -53878271 + (TAG)n Simple_repeat Simple_repeat 2 55 0 1 1314 492 184 0 67 chr6 95638772 95638877 -53878160 + B1_Mus1 SINE Alu 3 100 -48 1 1314 683 216 0 0 chr6 95638952 95639077 -53877960 - RSINE1 SINE B4 -37 128 4 1 1314 337 232 101 0 chr6 95639791 95639890 -53877147 - L1MEb LINE L1 -5550 520 412 1 1314 197 0 139 0 chr6 95640001 95640044 -53876993 + (TTTTTG)n Simple_repeat Simple_repeat 3 51 0 1 1314 517 193 32 81 chr6 95640045 95640169 -53876868 - PB1D9 SINE Alu 0 120 3 1 1314 294 336 104 0 chr6 95640886 95641020 -53876017 + MER117 DNA MER1_type 1 148 -49 1 1314 976 265 62 24 chr6 95641843 95642179 -53874858 - ORR1E LTR MaLR -9 350 2 1 1314 262 313 0 0 chr6 95642231 95642314 -53874723 - MurSatRep1 Unknown Unknown -1854 283 201 1 1314 246 176 0 0 chr6 95643275 95643326 -53873711 + B1_Mur4 SINE Alu 100 150 0 1 1314 324 143 0 0 chr6 95644185 95644241 -53872796 + (A)n Simple_repeat Simple_repeat 1 56 0 1 1314 296 244 48 12 chr6 95645199 95645282 -53871755 + Lx8 LINE L1 7153 7238 -235 1 1314 824 132 7 0 chr6 95645343 95645495 -53871542 + (TC)n Simple_repeat Simple_repeat 2 154 0 2 1314 216 0 0 0 chr6 95645495 95645519 -53871518 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1314 3874 204 58 13 chr6 95645521 95646390 -53870647 + Lx9 LINE L1 6732 7639 -5 2 1314 26 0 0 0 chr6 95646402 95646428 -53870609 + AT_rich Low_complexity Low_complexity 1 26 0 2 1314 378 0 0 0 chr6 95646428 95646470 -53870567 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1314 3083 32 67 0 chr6 95646632 95647003 -53870034 - MTA_Mm LTR MaLR 0 396 1 2 1314 33 0 0 0 chr6 95647022 95647055 -53869982 + AT_rich Low_complexity Low_complexity 1 33 0 2 1314 213 39 0 0 chr6 95649046 95649072 -53867965 + (G)n Simple_repeat Simple_repeat 1 26 0 2 1314 448 132 0 32 chr6 95650481 95650575 -53866462 + G-rich Low_complexity Low_complexity 3 93 0 2 1314 264 248 36 14 chr6 95650632 95650771 -53866266 + A-rich Low_complexity Low_complexity 3 144 0 2 1314 838 116 0 0 chr6 95651074 95651203 -53865834 + B2_Mm2 SINE B2 1 129 -66 2 1314 320 270 32 0 chr6 95651254 95651380 -53865657 + L1MD LINE L1 5304 5433 -926 2 1314 525 286 67 14 chr6 95651464 95651687 -53865350 + L1MD LINE L1 5560 5794 -448 2 1314 191 359 67 15 chr6 95651794 95651989 -53865048 + L2a LINE L2 2937 3141 -285 2 1314 198 191 0 0 chr6 95653904 95653946 -53863091 + GA-rich Low_complexity Low_complexity 1 42 0 2 1314 409 278 159 86 chr6 95654086 95654321 -53862716 - MLT1C LTR MaLR -73 394 125 2 1314 947 152 7 0 chr6 95654321 95654466 -53862571 - B1_Mus2 SINE Alu -1 146 1 2 1314 409 278 159 86 chr6 95654466 95654589 -53862448 - MLT1C LTR MaLR -343 124 10 2 1314 582 257 102 100 chr6 95655198 95655660 -53861377 + L1MB3 LINE L1 5695 6157 -26 2 1314 855 234 32 23 chr6 95656042 95656261 -53860776 + ID_B1 SINE B4 1 221 -3 2 1314 22 35 0 0 chr6 95656395 95656424 -53860613 + AT_rich Low_complexity Low_complexity 1 29 0 2 1314 263 217 84 0 chr6 95657591 95657674 -53859363 + B1F1 SINE Alu 14 103 -46 2 1314 3399 33 2 8 chr6 95658676 95659074 -53857963 - MTA_Mm LTR MaLR 0 396 1 2 1314 461 272 131 20 chr6 95659565 95659764 -53857273 - ID_B1 SINE B4 0 224 4 2 1314 409 223 47 37 chr6 95659801 95659908 -53857129 - RSINE1 SINE B4 -36 129 22 2 1314 195 109 30 179 chr6 95662293 95662360 -53854677 - L2a LINE L2 -91 3335 3279 2 1314 360 246 14 14 chr6 95662672 95662816 -53854221 + CT-rich Low_complexity Low_complexity 2 145 0 2 1314 764 153 20 81 chr6 95663849 95663998 -53853039 + B1_Mur2 SINE Alu 1 140 -9 2 1314 339 250 72 5 chr6 95664299 95664349 -53852688 + ID_B1 SINE B4 29 190 -34 2 1314 310 229 156 0 chr6 95664349 95664445 -53852592 + PB1D7 SINE Alu 1 111 -9 2 1314 279 288 55 55 chr6 95664594 95664704 -53852333 + PB1D10 SINE Alu 2 111 -6 2 1314 999 239 75 81 chr6 95665292 95665652 -53851385 + MTE2b LTR MaLR 22 379 0 2 1314 22 35 0 0 chr6 95665684 95665713 -53851324 + AT_rich Low_complexity Low_complexity 1 29 0 2 1314 435 190 0 91 chr6 95665723 95665833 -53851204 + PB1D9 SINE Alu 19 118 -2 2 1314 355 265 39 19 chr6 95666779 95666883 -53850154 + B3 SINE B2 39 144 -72 2 1314 357 43 0 0 chr6 95666922 95666969 -53850068 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1314 696 247 55 34 chr6 95667022 95667257 -53849780 - B4A SINE B4 -43 249 10 2 1314 180 135 0 0 chr6 95667956 95667993 -53849044 + (G)n Simple_repeat Simple_repeat 1 37 0 2 1314 273 333 0 73 chr6 95668787 95668978 -53848059 + G-rich Low_complexity Low_complexity 4 180 0 2 1314 279 339 0 30 chr6 95668846 95668977 -53848060 + GA-rich Low_complexity Low_complexity 1 127 0 2 1314 259 294 26 68 chr6 95669376 95669493 -53847544 - PB1D10 SINE Alu 0 117 6 2 1314 210 343 57 0 chr6 95669443 95669513 -53847524 - B4A SINE B4 -152 140 67 2 1314 269 311 140 0 chr6 95669671 95669835 -53847202 - MIR SINE MIR -27 235 49 2 1314 501 17 0 0 chr6 95670143 95670201 -53846836 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1314 636 251 101 24 chr6 95670216 95670424 -53846613 - B4A SINE B4 -60 232 9 2 1314 1136 82 0 0 chr6 95671920 95672067 -53844970 + B1_Mus1 SINE Alu 2 148 0 2 1314 1364 243 25 20 chr6 95672219 95672576 -53844461 - ORR1E LTR MaLR 0 359 1 2 1314 288 0 0 0 chr6 95672626 95672658 -53844379 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 2 1314 584 129 0 10 chr6 95673764 95673866 -53843171 + (TTCC)n Simple_repeat Simple_repeat 4 104 0 2 1314 185 222 0 16 chr6 95674578 95674642 -53842395 + GA-rich Low_complexity Low_complexity 2 64 0 2 1314 603 74 0 0 chr6 95674645 95674726 -53842311 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 2 1314 2675 159 77 25 chr6 95675816 95675935 -53841102 - Lx4B LINE L1 0 7058 6922 2 1314 351 0 0 0 chr6 95675935 95675974 -53841063 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1314 2675 159 77 25 chr6 95675974 95676075 -53840962 - Lx4B LINE L1 -137 6921 6813 2 1314 318 26 0 0 chr6 95676075 95676114 -53840923 + (CCCCCA)n Simple_repeat Simple_repeat 4 42 0 2 1314 2675 159 77 25 chr6 95676114 95676422 -53840615 - Lx4B LINE L1 -246 6812 6502 2 1314 234 0 0 0 chr6 95676720 95676746 -53840291 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2 1314 1111 82 0 7 chr6 95677606 95677754 -53839283 + B1_Mus2 SINE Alu 1 147 0 2 1314 21 0 0 0 chr6 95677754 95677775 -53839262 + AT_rich Low_complexity Low_complexity 1 21 0 2 1314 1961 119 30 33 chr6 95678095 95678425 -53838612 + ORR1A4 LTR MaLR 1 329 0 2 1314 381 43 0 0 chr6 95678946 95678993 -53838044 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1314 263 272 25 0 chr6 95679842 95679923 -53837114 + Charlie5 DNA MER1_type 26 108 -2516 2 1314 234 179 0 0 chr6 95679965 95680004 -53837033 - ID4 SINE ID -42 41 3 2 1314 1277 191 149 54 chr6 95680026 95680483 -53836554 + RMER4B LTR ERVK 17 565 -20 2 1314 245 373 18 9 chr6 95680486 95680597 -53836440 - PB1D10 SINE Alu -5 112 1 2 1314 2111 142 68 8 chr6 95680856 95681226 -53835811 + ORR1B1 LTR MaLR 1 392 -2 2 1314 527 168 187 0 chr6 95681627 95681734 -53835303 - B1_Mm SINE Alu -16 131 5 2 1314 255 31 0 0 chr6 95682359 95682391 -53834646 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1315 23 54 0 0 chr6 95682801 95682838 -53834199 + AT_rich Low_complexity Low_complexity 1 37 0 2 1315 2177 111 75 3 chr6 95683062 95683422 -53833615 - ORR1B1 LTR MaLR -8 386 1 2 1315 1242 169 161 5 chr6 95683674 95684081 -53832956 + RMER5 LTR ERV1 48 518 -16 2 1315 595 232 0 0 chr6 95684090 95684215 -53832822 + B1_Mur2 SINE Alu 25 149 0 2 1315 327 279 87 0 chr6 95684802 95684906 -53832131 + MER58A DNA MER1_type 49 161 -63 2 1315 388 309 24 16 chr6 95684945 95685070 -53831967 + L2a LINE L2 3301 3426 0 2 1315 230 254 0 0 chr6 95685116 95685171 -53831866 - B1F SINE Alu -1 148 94 2 1315 1213 88 22 16 chr6 95685426 95685585 -53831452 + B2_Mm1a SINE B2 3 160 -33 2 1315 423 0 0 0 chr6 95685585 95685632 -53831405 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 2 1315 1213 88 22 16 chr6 95685632 95685656 -53831381 + B2_Mm1a SINE B2 161 186 -7 2 1315 1131 211 59 58 chr6 95685673 95685891 -53831146 - MTD LTR MaLR -14 405 200 2 1315 812 221 0 0 chr6 95685891 95686040 -53830997 - B1_Mur4 SINE Alu 0 150 2 2 1315 1131 231 42 65 chr6 95686040 95686239 -53830798 - MTD LTR MaLR -220 199 14 2 1315 751 172 0 0 chr6 95686319 95686447 -53830590 + B1_Mus1 SINE Alu 21 148 0 2 1315 356 109 21 18 chr6 95686449 95686523 -53830514 + ORR1E LTR MaLR 287 379 0 2 1315 948 266 8 40 chr6 95686858 95687109 -53829928 + B4 SINE B4 1 243 -49 2 1315 475 294 60 33 chr6 95687348 95687499 -53829538 - RSINE1 SINE B4 -1 164 10 2 1315 447 19 0 0 chr6 95688076 95688128 -53828909 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1315 260 216 95 0 chr6 95688896 95688970 -53828067 - MTEb LTR MaLR 0 379 299 2 1315 260 305 81 140 chr6 95689331 95689552 -53827485 - LTR16A1 LTR ERVL -230 226 19 2 1315 333 299 47 7 chr6 95689715 95689863 -53827174 - L1MA10 LINE L1 0 6334 6181 2 1315 211 98 37 56 chr6 95690047 95690101 -53826936 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 2 1315 1849 308 92 48 chr6 95690118 95690906 -53826131 + MTE-int LTR MaLR 604 1420 -160 2 1315 874 179 0 0 chr6 95690906 95691046 -53825991 - B1_Mus1 SINE Alu -8 140 1 2 1315 1849 308 92 48 chr6 95691046 95691158 -53825879 + MTE-int LTR MaLR 1421 1544 -36 2 1315 569 283 92 82 chr6 95691183 95691464 -53825573 + ORR1E LTR MaLR 45 328 -31 2 1315 22 0 0 0 chr6 95692215 95692237 -53824800 + AT_rich Low_complexity Low_complexity 1 22 0 2 1315 629 296 7 0 chr6 95692744 95692886 -53824151 - ID_B1 SINE B4 -31 193 51 2 1315 471 322 92 34 chr6 95692890 95693128 -53823909 + LTR16C LTR ERVL 238 489 0 2 1315 203 337 28 19 chr6 95693190 95693296 -53823741 - MIRb SINE MIR -58 210 104 2 1315 268 330 31 108 chr6 95693314 95693443 -53823594 - B1F2 SINE Alu -30 119 1 2 1315 627 290 12 30 chr6 95693443 95693508 -53823529 - ID SINE ID -147 77 16 2 1315 347 307 45 82 chr6 95695106 95695326 -53821711 + RMER15 LTR ERVL 350 561 -14 2 1315 1167 75 0 0 chr6 95695480 95695627 -53821410 - B1_Mus2 SINE Alu 0 147 1 2 1315 29 0 0 0 chr6 95695710 95695739 -53821298 + AT_rich Low_complexity Low_complexity 1 29 0 2 1315 2050 145 8 11 chr6 95695922 95696277 -53820760 - ORR1B1 LTR MaLR 0 394 41 2 1315 889 240 97 15 chr6 95696563 95696835 -53820202 + MTC LTR MaLR 126 404 -17 2 1315 820 170 0 0 chr6 95696858 95696993 -53820044 + B1_Mur4 SINE Alu 1 135 -15 2 1315 882 218 29 34 chr6 95697002 95697211 -53819826 - B3 SINE B2 0 216 9 2 1315 696 107 0 0 chr6 95697245 95697348 -53819689 + (TTC)n Simple_repeat Simple_repeat 3 105 0 3 1315 420 208 0 0 chr6 95697330 95697426 -53819611 + C-rich Low_complexity Low_complexity 1 96 0 3 1315 875 297 80 85 chr6 95697580 95698146 -53818891 + Lx8 LINE L1 6777 7339 -134 3 1315 1399 76 0 31 chr6 95698211 95698402 -53818635 - B2_Mm2 SINE B2 -9 186 2 3 1315 261 0 0 0 chr6 95699361 95699390 -53817647 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1315 624 293 96 0 chr6 95700368 95700566 -53816471 - ID_B1 SINE B4 -6 218 2 3 1315 1499 267 112 30 chr6 95701024 95701953 -53815084 - Lx7 LINE L1 -1513 5960 4905 3 1315 247 231 0 30 chr6 95701976 95702043 -53814994 + PB1D10 SINE Alu 53 117 0 3 1315 414 0 0 0 chr6 95702055 95702101 -53814936 + (GAA)n Simple_repeat Simple_repeat 3 48 0 3 1315 528 59 0 0 chr6 95702101 95702169 -53814868 + (GGAA)n Simple_repeat Simple_repeat 2 69 0 3 1315 198 0 0 0 chr6 95702170 95702192 -53814845 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1315 1778 144 115 9 chr6 95702415 95702764 -53814273 - ORR1B1 LTR MaLR -8 386 1 3 1315 331 265 0 0 chr6 95702764 95702830 -53814207 + RSINE1 SINE B4 22 87 -78 3 1315 478 290 75 7 chr6 95703095 95703241 -53813796 + MER20 DNA MER1_type 6 161 -58 3 1315 1147 259 99 16 chr6 95703257 95703630 -53813407 - MTD LTR MaLR -14 405 2 3 1315 7227 47 1 12 chr6 95703670 95704204 -53812833 + L1Md_F2 LINE L1 5703 6237 -345 3 1315 3547 30 0 128 chr6 95704204 95704704 -53812333 - RLTR10C LTR ERVK 0 436 1 3 1315 7227 47 1 12 chr6 95704704 95705059 -53811978 + L1Md_F2 LINE L1 6238 6582 0 3 1315 21 0 0 0 chr6 95705515 95705536 -53811501 + AT_rich Low_complexity Low_complexity 1 21 0 3 1315 309 256 70 0 chr6 95707070 95707156 -53809881 - PB1D10 SINE Alu -16 101 10 3 1315 369 318 0 0 chr6 95707378 95707510 -53809527 + GA-rich Low_complexity Low_complexity 3 134 0 3 1315 421 171 24 0 chr6 95707512 95707594 -53809443 + ID_B1 SINE B4 123 206 -18 3 1315 38 22 0 0 chr6 95707735 95707780 -53809257 + AT_rich Low_complexity Low_complexity 1 45 0 3 1315 243 198 101 28 chr6 95707782 95707891 -53809146 + MER33 DNA MER1_type 136 252 -72 3 1315 343 294 5 11 chr6 95707901 95708011 -53809026 - PB1D10 SINE Alu -8 112 1 3 1315 207 200 0 0 chr6 95708049 95708089 -53808948 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1315 979 238 49 19 chr6 95708092 95708358 -53808679 - B4A SINE B4 -1 291 18 3 1315 301 151 13 27 chr6 95709175 95709217 -53807820 + polypurine Low_complexity Low_complexity 1 40 0 3 1315 812 39 10 0 chr6 95709217 95709321 -53807716 + (GGGAA)n Simple_repeat Simple_repeat 3 107 0 3 1315 301 151 13 27 chr6 95709321 95709353 -53807684 + polypurine Low_complexity Low_complexity 41 72 0 3 1315 27 29 0 0 chr6 95710041 95710075 -53806962 + AT_rich Low_complexity Low_complexity 1 34 0 3 1315 231 175 0 73 chr6 95710135 95710203 -53806834 - B4A SINE B4 0 292 230 3 1315 2191 121 90 23 chr6 95710206 95710257 -53806780 + RMER17C-int LTR ERVK 2824 2897 -341 3 1315 423 0 0 0 chr6 95710257 95710304 -53806733 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1315 2191 121 90 23 chr6 95710304 95710641 -53806396 + RMER17C-int LTR ERVK 2898 3238 0 3 1315 854 186 61 41 chr6 95710641 95710929 -53806108 + RMER17C LTR ERVK 1 410 0 3 1315 657 259 63 31 chr6 95710931 95711154 -53805883 - B4A SINE B4 -61 231 2 3 1315 330 372 0 14 chr6 95712188 95712335 -53804702 + B1F SINE Alu 1 145 -4 3 1315 1257 96 0 50 chr6 95712344 95712542 -53804495 + B2_Mm2 SINE B2 3 190 -5 3 1315 329 337 95 26 chr6 95713359 95713548 -53803489 + MER58A DNA MER1_type 1 202 -22 3 1315 265 320 41 0 chr6 95713760 95713857 -53803180 - MER5A DNA MER1_type -85 104 4 3 1315 342 156 0 0 chr6 95714053 95714117 -53802920 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1315 388 229 0 0 chr6 95714135 95714218 -53802819 + ID4 SINE ID 1 83 0 3 1315 241 315 0 101 chr6 95714439 95714538 -53802499 - LTR16A LTR ERVL -352 99 11 3 1315 278 289 15 38 chr6 95714813 95714946 -53802091 - L1MC5 LINE L1 -379 7582 7453 3 1315 684 226 0 21 chr6 95715469 95715609 -53801428 + B1F2 SINE Alu 12 148 -1 3 1315 1474 147 107 75 chr6 95716328 95716373 -53800664 - ORR1B1 LTR MaLR -8 386 349 3 1315 1123 82 0 0 chr6 95716373 95716519 -53800518 - B1_Mus2 SINE Alu 0 147 2 3 1315 1474 147 107 75 chr6 95716519 95716847 -53800190 - ORR1B1 LTR MaLR -46 348 1 3 1315 247 236 124 62 chr6 95717049 95717162 -53799875 - B1F1 SINE Alu -29 120 1 3 1315 378 0 0 0 chr6 95717571 95717613 -53799424 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1315 688 289 57 104 chr6 95717630 95717710 -53799327 - B4A SINE B4 -8 284 220 3 1315 743 298 5 0 chr6 95717710 95717918 -53799119 - B3 SINE B2 -6 210 2 3 1315 688 289 57 104 chr6 95717918 95718134 -53798903 - B4A SINE B4 -73 219 2 3 1315 227 300 25 12 chr6 95718154 95718235 -53798802 + LTR16E2 LTR ERVL 471 552 -16 3 1315 2140 137 123 8 chr6 95718235 95718610 -53798427 + MTC LTR MaLR 2 419 -2 3 1315 619 192 117 43 chr6 95719887 95720050 -53796987 - MTD LTR MaLR -51 368 194 3 1315 2552 127 28 10 chr6 95720095 95720207 -53796830 - Lx2B LINE L1 -7 6993 6873 3 1315 195 42 0 0 chr6 95720207 95720231 -53796806 + (CCCA)n Simple_repeat Simple_repeat 1 24 0 3 1315 2552 127 28 10 chr6 95720231 95720517 -53796520 - Lx2B LINE L1 -128 6872 6588 3 1315 451 275 63 82 chr6 95720517 95720723 -53796314 - MTD LTR MaLR -217 202 1 3 1315 254 288 18 46 chr6 95720751 95720860 -53796177 - Lx9 LINE L1 -276 7368 7263 3 1315 465 300 14 7 chr6 95720841 95720982 -53796055 - Lx8 LINE L1 -261 7212 7071 3 1315 252 0 0 0 chr6 95720988 95721016 -53796021 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1315 24 0 0 0 chr6 95721950 95721974 -53795063 + AT_rich Low_complexity Low_complexity 1 24 0 3 1315 296 265 12 12 chr6 95722088 95722172 -53794865 - RSINE1 SINE B4 -74 91 8 3 1315 464 250 16 49 chr6 95722454 95722576 -53794461 - ID_B1 SINE B4 -1 223 106 3 1315 254 191 0 0 chr6 95723457 95723504 -53793533 + Lx9 LINE L1 7419 7465 -179 3 1315 180 0 0 0 chr6 95723612 95723632 -53793405 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1315 261 0 0 0 chr6 95723755 95723784 -53793253 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1315 228 135 0 0 chr6 95724197 95724234 -53792803 + (TCC)n Simple_repeat Simple_repeat 3 39 0 3 1315 641 135 58 87 chr6 95724238 95724376 -53792661 - B1_Mur4 SINE Alu -14 136 3 3 1315 1477 78 21 10 chr6 95725815 95726008 -53791029 - B2_Mm2 SINE B2 0 195 1 3 1315 388 264 25 92 chr6 95726530 95726693 -53790344 + RSINE1 SINE B4 14 165 0 3 1315 202 219 0 24 chr6 95726707 95726749 -53790288 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 1315 443 331 23 28 chr6 95727218 95727395 -53789642 + MER5B DNA MER1_type 2 177 -1 3 1315 239 372 10 10 chr6 95727429 95727532 -53789505 + MLT1C LTR MaLR 6 108 -359 3 1315 4478 62 30 9 chr6 95727541 95728099 -53788938 + L1_Mus2 LINE L1 5997 6566 0 3 1315 351 0 0 0 chr6 95728143 95728182 -53788855 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1315 380 275 151 114 chr6 95728200 95728279 -53788758 + B4 SINE B4 2 86 -206 3 1315 216 0 0 0 chr6 95728279 95728303 -53788734 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 3 1315 380 275 151 114 chr6 95728303 95728494 -53788543 + B4 SINE B4 87 282 -10 3 1315 2529 63 119 11 chr6 95729268 95729620 -53787417 + RLTR10 LTR ERVK 1 390 0 3 1315 447 52 0 0 chr6 95729680 95729738 -53787299 + (TGG)n Simple_repeat Simple_repeat 1 58 0 3 1315 284 268 47 47 chr6 95729745 95729874 -53787163 + MLT1C LTR MaLR 332 460 -7 3 1315 394 264 221 42 chr6 95730821 95731011 -53786026 - ID_B1 SINE B4 0 224 1 3 1315 313 22 43 0 chr6 95731155 95731201 -53785836 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1315 1038 244 76 36 chr6 95731942 95732219 -53784818 - B4A SINE B4 0 292 5 3 1315 656 281 0 50 chr6 95732783 95732985 -53784052 - B3A SINE B2 -5 193 2 3 1315 492 214 113 88 chr6 95733789 95733948 -53783089 - RSINE1 SINE B4 -1 164 2 3 1315 31 26 0 0 chr6 95734023 95734061 -53782976 + AT_rich Low_complexity Low_complexity 1 38 0 3 1315 385 245 9 5 chr6 95734279 95734386 -53782651 - B1F SINE Alu -8 109 5 3 1315 541 230 137 40 chr6 95734613 95734680 -53782357 + L1M2 LINE L1 5550 5615 -676 3 1315 381 282 49 0 chr6 95734680 95734822 -53782215 + B1F1 SINE Alu 1 149 0 3 1315 541 230 137 40 chr6 95734822 95734980 -53782057 + L1M2 LINE L1 5616 5797 -494 3 1315 29 0 0 0 chr6 95735812 95735841 -53781196 + AT_rich Low_complexity Low_complexity 1 29 0 3 1315 273 182 0 0 chr6 95735872 95735927 -53781110 + C-rich Low_complexity Low_complexity 5 59 0 3 1315 208 254 18 0 chr6 95736335 95736390 -53780647 + CT-rich Low_complexity Low_complexity 1 56 0 3 1315 207 0 0 0 chr6 95736390 95736413 -53780624 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 3 1315 357 43 0 0 chr6 95736417 95736464 -53780573 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1315 472 306 0 75 chr6 95736469 95736628 -53780409 + MLT1B LTR MaLR 188 334 -56 3 1315 260 271 23 23 chr6 95736670 95736757 -53780280 - L1MDa LINE L1 -4935 1698 1612 3 1315 798 172 0 88 chr6 95736763 95736922 -53780115 - B1_Mur4 SINE Alu -1 149 5 3 1315 528 121 0 0 chr6 95736922 95737013 -53780024 + (CCA)n Simple_repeat Simple_repeat 1 91 0 3 1315 453 278 56 115 chr6 95737026 95737331 -53779706 - L1MDa LINE L1 -5026 1607 1321 3 1315 346 219 49 0 chr6 95737420 95737502 -53779535 - RSINE1 SINE B4 -78 87 2 3 1315 363 297 45 54 chr6 95737629 95737853 -53779184 - L1MDa LINE L1 -5403 1230 1009 3 1315 542 178 0 53 chr6 95738072 95738262 -53778775 + (CCA)n Simple_repeat Simple_repeat 1 180 0 3 1315 267 103 0 0 chr6 95738299 95738338 -53778699 + (CCA)n Simple_repeat Simple_repeat 1 39 0 3 1315 317 370 92 28 chr6 95738339 95738623 -53778414 - L1MDa LINE L1 -6228 405 104 3 1315 425 219 0 30 chr6 95738654 95738753 -53778284 + Charlie12 DNA MER1_type 37 132 -2741 3 1315 1592 49 0 16 chr6 95738882 95739070 -53777967 - B2_Mm1t SINE B2 -7 186 2 3 1315 311 113 19 0 chr6 95739791 95739844 -53777193 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 3 1315 342 0 0 0 chr6 95740268 95740306 -53776731 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3 1315 879 185 43 43 chr6 95740324 95740510 -53776527 - B3 SINE B2 -18 198 13 4 1315 247 289 11 22 chr6 95741415 95741507 -53775530 + Tigger16b DNA Tigger 224 314 -23 4 1315 348 274 1 111 chr6 95741845 95741975 -53775062 - PB1D7 SINE Alu -1 126 7 4 1315 189 107 0 0 chr6 95742755 95742783 -53774254 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 1315 239 225 14 0 chr6 95742803 95742874 -53774163 + CT-rich Low_complexity Low_complexity 1 72 0 4 1315 324 0 0 0 chr6 95742893 95742929 -53774108 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1315 423 257 0 95 chr6 95742930 95743046 -53773991 - B4A SINE B4 -23 269 165 4 1315 228 239 0 0 chr6 95743488 95743534 -53773503 + CT-rich Low_complexity Low_complexity 2 47 0 4 1315 38735 31 0 0 chr6 95744360 95750783 -53766254 - L1Md_T LINE L1 0 6585 66 4 1315 22 0 0 0 chr6 95752916 95752938 -53764099 + AT_rich Low_complexity Low_complexity 1 22 0 4 1315 969 287 70 32 chr6 95752938 95753341 -53763696 - Lx8 LINE L1 -1 7472 7055 4 1315 505 223 126 0 chr6 95753362 95753465 -53763572 - PB1D10 SINE Alu -1 116 1 4 1315 215 319 0 14 chr6 95753658 95753731 -53763306 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 4 1315 468 0 0 0 chr6 95755636 95755688 -53761349 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1315 692 222 16 0 chr6 95756492 95756618 -53760419 + B1_Mur1 SINE Alu 5 132 -17 4 1315 417 350 34 53 chr6 95756630 95756838 -53760199 - MER58A DNA MER1_type -16 208 5 4 1315 219 88 0 0 chr6 95757098 95757132 -53759905 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 4 1315 1603 158 148 16 chr6 95757134 95757507 -53759530 - IAPLTR2_Mm LTR ERVK -53 422 1 4 1315 6376 65 20 2 chr6 95757507 95758322 -53758715 - IAPEz-int LTR ERVK 0 6481 5653 4 1315 2640 82 0 3 chr6 95758317 95758660 -53758377 - IAPEz-int LTR ERVK -4781 1700 1359 4 1315 3812 77 0 18 chr6 95758660 95759164 -53757873 - IAPEz-int LTR ERVK -5819 662 168 4 1315 230 327 0 0 chr6 95759164 95759219 -53757818 - RLTR27 LTR ERVK -34 275 221 4 1315 981 138 32 20 chr6 95759219 95759403 -53757634 - IAPEz-int LTR ERVK -7331 250 9 4 1315 1948 159 117 52 chr6 95759404 95759848 -53757189 - IAPLTR2_Mm LTR ERVK 0 475 3 4 1315 35298 35 3 8 chr6 95759850 95764874 -53752163 - L1Md_A LINE L1 -497 5386 390 4 1315 374 269 0 40 chr6 95764896 95765020 -53752017 - Lx8 LINE L1 -2 7471 7353 4 1315 2160 189 86 69 chr6 95765046 95765637 -53751400 - Lx9 LINE L1 -7 7637 7037 4 1315 1410 194 33 89 chr6 95765626 95765801 -53751236 - Lx9 LINE L1 -851 6793 6635 4 1315 1636 52 0 25 chr6 95765801 95765999 -53751038 - B2_Mm2 SINE B2 -2 193 1 4 1315 1410 194 33 89 chr6 95765999 95766184 -53750853 - Lx9 LINE L1 -1010 6634 6453 4 1315 935 292 38 8 chr6 95766187 95766449 -53750588 - Lx8 LINE L1 -132 7341 7072 4 1315 258 355 0 19 chr6 95767546 95767701 -53749336 - L1M5 LINE L1 -714 5730 5579 4 1315 585 299 34 21 chr6 95767854 95768093 -53748944 - L1M5 LINE L1 -676 5497 5256 4 1315 2232 160 10 10 chr6 95768238 95768624 -53748413 - ORR1B1 LTR MaLR -8 386 1 4 1315 470 331 89 60 chr6 95769569 95769919 -53747118 - Lx7 LINE L1 -73 7400 7041 4 1315 380 147 15 0 chr6 95769922 95769990 -53747047 + ORR1B1 LTR MaLR 1 69 -325 4 1315 371 335 106 70 chr6 95769990 95770359 -53746678 - Lx7 LINE L1 -441 7032 6651 4 1315 3202 281 40 78 chr6 95770561 95771160 -53745877 - Lx7 LINE L1 -1639 6005 5410 4 1315 544 263 85 11 chr6 95771160 95771193 -53745844 - B2_Mm2 SINE B2 -4 191 159 4 1315 473 0 18 0 chr6 95771193 95771250 -53745787 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1315 732 212 12 1 chr6 95771250 95771393 -53745644 - B3 SINE B2 -37 158 2 4 1315 3202 291 62 112 chr6 95771393 95772361 -53744676 - Lx7 LINE L1 -471 5409 4371 4 1315 360 0 0 0 chr6 95772361 95772401 -53744636 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1315 3202 291 62 112 chr6 95772401 95772771 -53744266 - Lx7 LINE L1 -1510 4370 3981 4 1315 21 0 0 0 chr6 95773647 95773668 -53743369 + AT_rich Low_complexity Low_complexity 1 21 0 4 1315 1590 262 35 51 chr6 95773843 95774611 -53742426 - Lx7 LINE L1 -2381 3499 2744 4 1315 1928 220 142 59 chr6 95774624 95775217 -53741820 + RMER19B LTR ERVK 5 902 0 4 1315 1176 287 97 64 chr6 95775219 95775836 -53741201 - Lx7 LINE L1 -3173 2707 2037 4 1315 1175 226 14 0 chr6 95775836 95776048 -53740989 - B3 SINE B2 0 216 2 4 1315 1176 287 97 64 chr6 95776048 95776284 -53740753 - Lx7 LINE L1 -3844 2036 1826 4 1315 702 234 45 30 chr6 95777249 95777493 -53739544 - L1MA4 LINE L1 -393 5907 5677 4 1315 260 49 49 0 chr6 95778210 95778251 -53738786 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 4 1315 772 305 22 35 chr6 95778258 95778486 -53738551 - B4 SINE B4 -67 225 1 4 1315 1747 171 139 58 chr6 95778541 95778951 -53738086 + RLTR11A LTR ERVK 1 443 -85 4 1315 400 292 123 71 chr6 95779257 95779412 -53737625 - RSINE1 SINE B4 0 165 3 4 1315 372 325 85 82 chr6 95779910 95780312 -53736725 + L1MC3 LINE L1 6726 7128 -657 4 1315 261 0 0 0 chr6 95780312 95780341 -53736696 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1315 344 314 50 19 chr6 95780467 95780626 -53736411 - B4A SINE B4 -121 171 8 4 1315 23 33 0 0 chr6 95780744 95780774 -53736263 + AT_rich Low_complexity Low_complexity 1 30 0 4 1315 2878 52 27 6 chr6 95780900 95781265 -53735772 + L1Md_F2 LINE L1 6201 6573 -9 4 1315 273 272 175 0 chr6 95781305 95781419 -53735618 + L1MC3 LINE L1 7488 7621 -164 4 1315 1966 168 64 8 chr6 95781444 95781817 -53735220 + ORR1B1 LTR MaLR 1 394 0 4 1315 430 340 0 0 chr6 95782036 95782180 -53734857 - B1F2 SINE Alu -2 147 4 4 1315 214 264 37 19 chr6 95782204 95782258 -53734779 - ID4_ SINE ID -24 59 5 4 1315 546 293 24 0 chr6 95782578 95782701 -53734336 - RSINE1 SINE B4 -36 129 4 4 1315 694 228 28 0 chr6 95784001 95784146 -53732891 - B1_Mur3 SINE Alu 0 149 1 4 1315 730 196 72 0 chr6 95784158 95784296 -53732741 - B1_Mur1 SINE Alu 0 149 2 4 1315 36206 30 0 0 chr6 95784695 95791310 -53725727 - L1Md_T LINE L1 0 6585 1 4 1315 688 252 0 20 chr6 95791476 95791622 -53725415 + B1_Mus1 SINE Alu 1 143 -5 4 1315 295 361 39 78 chr6 95791485 95791665 -53725372 + B4 SINE B4 94 266 -26 4 1315 2722 151 89 69 chr6 95792563 95792997 -53724040 + RLTR19-int LTR ERVK 3267 3672 -2465 4 1315 1816 44 9 0 chr6 95792997 95793223 -53723814 - L1Md_A LINE L1 0 6582 6355 4 1315 2722 151 89 69 chr6 95793223 95793484 -53723553 + RLTR19-int LTR ERVK 3673 3975 -2162 4 1315 241 230 42 35 chr6 95793612 95793756 -53723281 + (CATATA)n Simple_repeat Simple_repeat 5 149 0 4 1315 27 100 0 0 chr6 95793756 95793846 -53723191 + AT_rich Low_complexity Low_complexity 1 90 0 4 1315 1590 173 96 33 chr6 95793938 95794123 -53722914 + RMER16-int LTR ERVK 3592 3794 -1612 4 1315 1950 142 28 3 chr6 95794123 95794442 -53722595 + ORR1A2 LTR MaLR 1 327 0 4 1315 1590 173 96 33 chr6 95794442 95794621 -53722416 + RMER16-int LTR ERVK 3795 3979 -1427 4 1315 2675 249 35 38 chr6 95794861 95795873 -53721164 + RMER16-int LTR ERVK 3981 4989 -417 4 1315 24 0 0 0 chr6 95796404 95796428 -53720609 + AT_rich Low_complexity Low_complexity 1 24 0 4 1315 368 284 128 14 chr6 95796851 95797133 -53719904 + L1MC3 LINE L1 7373 7686 -99 4 1315 1063 59 0 0 chr6 95797150 95797286 -53719751 - B1_Mm SINE Alu 0 147 12 4 1315 21 0 0 0 chr6 95797707 95797728 -53719309 + AT_rich Low_complexity Low_complexity 1 21 0 4 1315 33336 61 1 8 chr6 95797839 95801495 -53715542 - L1Md_F2 LINE L1 0 6582 2934 4 1315 3211 51 8 0 chr6 95801495 95801888 -53715149 + MTA_Mm LTR MaLR 1 396 0 4 1315 33336 68 2 8 chr6 95801888 95802994 -53714043 - L1Md_F2 LINE L1 -2950 2933 1848 4 1315 2496 42 58 0 chr6 95802994 95803303 -53713734 + IAPLTR2b LTR ERVK 1 327 0 4 1315 33336 83 15 7 chr6 95803303 95804974 -53712063 - L1Md_F2 LINE L1 -4036 1847 164 4 1315 252 0 0 0 chr6 95806818 95806846 -53710191 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 4 1315 686 292 97 0 chr6 95806871 95807066 -53709971 + ID_B1 SINE B4 9 222 -2 4 1315 307 279 19 19 chr6 95807176 95807282 -53709755 + (CATA)n Simple_repeat Simple_repeat 1 106 0 4 1315 553 261 45 87 chr6 95807341 95807632 -53709405 + RLTR11B LTR ERVK 1 273 -168 4 1315 326 156 16 0 chr6 95807632 95807696 -53709341 + GA-rich Low_complexity Low_complexity 2 66 0 4 1315 382 311 82 23 chr6 95807696 95807746 -53709291 + RLTR12B LTR ERVK 243 298 -230 4 1315 189 0 0 0 chr6 95807746 95807767 -53709270 + (GGAGA)n Simple_repeat Simple_repeat 1 21 0 4 1315 382 311 82 23 chr6 95807767 95807973 -53709064 + RLTR12B LTR ERVK 299 513 -15 4 1315 514 405 161 31 chr6 95808001 95808447 -53708590 + MER115 DNA Tip100 87 590 -103 4 1315 4060 138 44 32 chr6 95808451 95808926 -53708111 - RMER6A LTR ERVK 0 756 270 4 1315 2944 30 0 71 chr6 95808926 95809319 -53707718 - RLTR10B2 LTR ERVK 0 365 1 4 1315 4060 138 44 32 chr6 95809319 95809590 -53707447 - RMER6A LTR ERVK -487 269 1 4 1315 534 256 41 45 chr6 95809723 95809968 -53707069 - L1M3 LINE L1 -1507 4633 4390 4 1315 1334 223 91 14 chr6 95810034 95810398 -53706639 - RCHARR1 DNA MER1_type -102 872 481 4 1315 351 0 0 0 chr6 95810446 95810485 -53706552 + (TTA)n Simple_repeat Simple_repeat 1 39 0 4 164 34030 76 1 14 chr6 95810485 95816775 -53700262 - L1Md_F2 LINE L1 -23 6559 354 4 1316 602 200 172 40 chr6 95816810 95817008 -53700029 - RCHARR1 DNA MER1_type -483 491 268 4 1316 775 216 116 63 chr6 95817052 95817094 -53699943 - ORR1D2 LTR MaLR -149 221 162 4 1316 315 0 0 0 chr6 95817094 95817129 -53699908 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1316 593 27 13 0 chr6 95817129 95817203 -53699834 + (GA)n Simple_repeat Simple_repeat 2 77 0 4 1316 775 216 116 63 chr6 95817203 95817366 -53699671 - ORR1D2 LTR MaLR -209 161 5 4 1316 1801 293 61 71 chr6 95817370 95818995 -53698042 - L1M2 LINE L1 -192 6390 4763 4 1316 1572 37 5 10 chr6 95818995 95819188 -53697849 + B2_Mm1t SINE B2 2 193 0 4 1316 459 299 70 82 chr6 95819247 95819908 -53697129 - L1M2 LINE L1 -2040 4805 4154 4 1316 336 331 5 97 chr6 95819917 95820124 -53696913 - L1M2 LINE L1 -3363 3482 3295 4 1316 309 350 55 20 chr6 95820114 95820260 -53696777 - L1M2 LINE L1 -3760 3085 2935 4 1316 295 301 153 12 chr6 95820504 95820746 -53696291 - L1M2 LINE L1 -4244 2605 2330 4 1316 250 45 0 43 chr6 95820748 95820794 -53696243 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1316 3401 47 2 14 chr6 95820883 95821312 -53695725 - L1Md_F2 LINE L1 -2 6580 6157 4 1316 396 325 21 6 chr6 95821884 95822170 -53694867 + L1M2 LINE L1 5528 5822 -490 4 1316 2871 42 0 0 chr6 95822237 95822569 -53694468 + IAPEY3_LTR LTR ERVK 1 332 0 4 1316 229 309 0 0 chr6 95822733 95822788 -53694249 + U2 snRNA snRNA 1 55 -133 4 1316 520 291 121 27 chr6 95822852 95823149 -53693888 + L1MB1 LINE L1 5815 6139 -29 4 1316 28 29 0 0 chr6 95824889 95824924 -53692113 + AT_rich Low_complexity Low_complexity 1 35 0 4 1316 207 69 0 0 chr6 95824924 95824953 -53692084 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1316 439 309 73 7 chr6 95824959 95825096 -53691941 - RSINE1 SINE B4 -17 148 3 4 1316 361 235 301 16 chr6 95825129 95825315 -53691722 - L2 LINE L2 -629 2790 2552 4 1316 878 247 147 20 chr6 95825728 95826124 -53690913 - L1MD2 LINE L1 -372 5987 5542 4 1316 396 55 0 0 chr6 95827194 95827249 -53689788 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 4 1316 234 0 0 0 chr6 95827272 95827298 -53689739 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1316 417 264 14 14 chr6 95827480 95827622 -53689415 - Lx9 LINE L1 -1674 5970 5829 4 1316 1392 122 39 0 chr6 95828769 95828999 -53688038 - L1_Mur2 LINE L1 -1345 4532 4294 5 1316 860 168 0 0 chr6 95829000 95829131 -53687906 + B1_Mus2 SINE Alu 3 133 -14 5 1316 188 35 35 0 chr6 95829135 95829164 -53687873 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 1316 254 98 20 0 chr6 95829165 95829216 -53687821 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 5 1316 600 284 17 113 chr6 95829899 95830137 -53686900 - B3 SINE B2 0 216 2 5 1316 1578 287 70 34 chr6 95830323 95830604 -53686433 + Lx8 LINE L1 5879 6164 -1309 5 1316 378 61 0 0 chr6 95830604 95830653 -53686384 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1316 1578 287 70 34 chr6 95830653 95831082 -53685955 + Lx8 LINE L1 6165 6614 -859 5 1316 1036 231 69 75 chr6 95831114 95831489 -53685548 + ORR1D1 LTR MaLR 2 374 0 5 1316 570 222 77 66 chr6 95831511 95831542 -53685495 - B2_Mm2 SINE B2 -4 191 156 5 1316 378 120 0 0 chr6 95831542 95831617 -53685420 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1316 814 168 31 17 chr6 95831617 95831768 -53685269 - B3A SINE B2 -40 155 7 5 1316 639 282 130 62 chr6 95833611 95833966 -53683071 + MTEa LTR MaLR 1 379 0 5 1316 457 279 189 57 chr6 95834102 95834573 -53682464 - MT2A LTR ERVL 0 533 1 5 1316 582 300 50 109 chr6 95835056 95835359 -53681678 - B4 SINE B4 -6 286 2 5 1316 595 227 0 9 chr6 95836219 95836330 -53680707 + PB1D9 SINE Alu 1 110 -10 5 1316 270 0 0 0 chr6 95837007 95837037 -53680000 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1316 25 0 0 0 chr6 95837154 95837179 -53679858 + AT_rich Low_complexity Low_complexity 1 25 0 5 1316 840 253 86 20 chr6 95837194 95837392 -53679645 - B3 SINE B2 -5 211 1 5 1316 690 291 26 21 chr6 95837402 95837595 -53679442 - B3A SINE B2 -4 194 1 5 1316 285 273 101 39 chr6 95838491 95838670 -53678367 - L1MC4 LINE L1 -979 7063 6874 5 1316 227 339 15 0 chr6 95839051 95839116 -53677921 - PB1D10 SINE Alu -51 66 1 5 1316 1374 229 67 17 chr6 95839229 95839417 -53677620 - ORR1D1 LTR MaLR 0 374 180 5 1316 933 133 0 0 chr6 95839417 95839575 -53677462 + (GGGA)n Simple_repeat Simple_repeat 4 161 0 5 1316 1374 229 67 17 chr6 95839575 95839732 -53677305 - ORR1D1 LTR MaLR -195 179 13 5 1316 390 57 0 0 chr6 95840100 95840153 -53676884 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1316 205 361 18 44 chr6 95840526 95840639 -53676398 - L2b LINE L2 0 3375 3266 5 1316 181 238 0 45 chr6 95840671 95840715 -53676322 + L2c LINE L2 3299 3340 -47 5 1316 804 210 62 49 chr6 95841767 95842042 -53674995 + RLTR33 LTR ERVK 175 531 -147 5 1316 893 158 100 12 chr6 95842151 95842311 -53674726 - B3 SINE B2 -41 175 2 5 1316 372 281 0 22 chr6 95842865 95842956 -53674081 + B4A SINE B4 2 90 -202 5 1316 420 20 0 0 chr6 95843004 95843053 -53673984 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1316 21 0 0 0 chr6 95843396 95843417 -53673620 + AT_rich Low_complexity Low_complexity 1 21 0 5 1316 377 310 62 0 chr6 95843998 95844111 -53672926 + Lx8 LINE L1 7173 7292 -181 5 1316 24 0 0 0 chr6 95844130 95844154 -53672883 + AT_rich Low_complexity Low_complexity 1 24 0 5 1316 243 326 92 64 chr6 95844214 95844463 -53672574 - L2 LINE L2 -676 2743 2488 5 1316 221 247 47 94 chr6 95844887 95844972 -53672065 - L2 LINE L2 -1526 1893 1813 5 1316 180 281 51 34 chr6 95844991 95845050 -53671987 - MER5A DNA MER1_type -13 176 117 5 1316 281 312 70 18 chr6 95845089 95845203 -53671834 - MER5A DNA MER1_type -40 149 30 5 1316 227 191 0 0 chr6 95845448 95845490 -53671547 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 5 1316 378 0 0 0 chr6 95845992 95846034 -53671003 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1316 202 56 27 27 chr6 95846768 95846780 -53670257 + (TTTTC)n Simple_repeat Simple_repeat 4 15 0 5 1316 1020 17 0 0 chr6 95846780 95846898 -53670139 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 5 1316 202 56 27 27 chr6 95846898 95846922 -53670115 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 5 1316 1264 61 0 0 chr6 95846922 95847069 -53669968 - B1_Mus1 SINE Alu 0 148 2 5 1316 1752 115 11 4 chr6 95847528 95847789 -53669248 - Lx LINE L1 -4 6650 6388 5 1316 504 241 90 0 chr6 95847790 95847935 -53669102 - Lx8 LINE L1 -427 7046 6889 5 1316 242 315 106 21 chr6 95848225 95848319 -53668718 - Lx8 LINE L1 -147 7326 7225 5 1316 396 327 123 18 chr6 95848328 95848555 -53668482 + L1MCa LINE L1 153 403 -6105 5 1316 777 260 107 19 chr6 95848803 95849073 -53667964 + L1MCa LINE L1 1969 2262 -4246 5 1316 1803 133 32 13 chr6 95849073 95849530 -53667507 + ORR1A2 LTR MaLR 1 343 -51 5 1316 375 250 50 0 chr6 95849579 95849739 -53667298 + (TCTA)n Simple_repeat Simple_repeat 4 171 0 5 1316 1029 238 87 29 chr6 95849782 95850197 -53666840 + L1MCa LINE L1 2873 3311 -3010 5 1316 617 327 6 24 chr6 95850202 95850368 -53666669 + RSINE1 SINE B4 3 165 0 5 1316 405 279 137 4 chr6 95850496 95850723 -53666314 + L1MCa LINE L1 3422 3678 -2643 5 1316 551 295 36 16 chr6 95850718 95850911 -53666126 - Lx8 LINE L1 -309 7164 6968 5 1316 1659 277 67 19 chr6 95850986 95851156 -53665881 + L1MC2 LINE L1 4624 4795 -1351 5 1316 1488 90 16 0 chr6 95851156 95851345 -53665692 + B2_Mm2 SINE B2 1 192 -3 5 1316 1659 283 155 10 chr6 95851345 95852565 -53664472 + L1MC2 LINE L1 4796 6203 -130 5 1316 181 161 16 31 chr6 95853489 95853553 -53663484 + T-rich Low_complexity Low_complexity 1 63 0 5 1316 214 361 72 0 chr6 95853647 95853744 -53663293 - MIRb SINE MIR -119 149 46 5 1316 414 276 61 56 chr6 95854343 95854607 -53662430 - LTR33 LTR ERVL -4 511 170 5 1316 591 15 0 0 chr6 95855492 95855560 -53661477 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 1316 437 357 40 37 chr6 95855587 95855936 -53661101 - L1MDa LINE L1 -5991 642 293 5 1316 662 290 57 101 chr6 95856002 95856370 -53660667 + ORR1E LTR MaLR 7 358 -1 5 1316 23 0 0 0 chr6 95856549 95856572 -53660465 + AT_rich Low_complexity Low_complexity 1 23 0 5 1316 472 271 35 88 chr6 95856595 95856765 -53660272 - RSINE1 SINE B4 -2 163 3 5 1316 477 0 0 0 chr6 95857436 95857489 -53659548 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1316 304 294 26 10 chr6 95857579 95857719 -53659318 - PB1D10 SINE Alu 0 149 5 5 1316 24 67 0 0 chr6 95857837 95857882 -53659155 + AT_rich Low_complexity Low_complexity 1 45 0 5 1316 345 47 0 0 chr6 95858568 95858611 -53658426 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1316 333 0 0 0 chr6 95858687 95858724 -53658313 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1316 844 307 18 29 chr6 95858726 95859001 -53658036 - B4A SINE B4 -18 274 3 5 1316 270 220 91 0 chr6 95859563 95859636 -53657401 - L1MC4 LINE L1 -470 7572 7502 5 1316 370 378 52 21 chr6 95859648 95859978 -53657059 + L2 LINE L2 1877 2216 -1203 5 1316 287 247 26 13 chr6 95860152 95860230 -53656807 - B4A SINE B4 -27 265 187 5 1316 2021 199 59 30 chr6 95860230 95860635 -53656402 + MTD LTR MaLR 1 417 -2 5 1316 380 318 9 43 chr6 95860638 95860753 -53656284 - B4A SINE B4 -164 128 18 5 1316 265 324 78 39 chr6 95860758 95860938 -53656099 + L2 LINE L2 2307 2493 -926 5 1316 201 255 39 0 chr6 95861033 95861084 -53655953 + MIR SINE MIR 197 249 -13 5 1316 232 229 71 12 chr6 95861280 95861364 -53655673 - L1M5 LINE L1 -464 5776 5688 5 1316 194 385 102 15 chr6 95861384 95861521 -53655516 - L2b LINE L2 -8 3367 3219 5 1316 495 336 32 0 chr6 95863600 95863725 -53653312 - RSINE1 SINE B4 -29 136 8 5 1316 1154 300 95 13 chr6 95863757 95864219 -53652818 - Lx8 LINE L1 -2 7471 6972 5 1316 233 320 48 39 chr6 95864277 95864381 -53652656 - MER5B DNA MER1_type -71 107 3 5 1316 229 368 23 39 chr6 95864436 95864566 -53652471 - MIR SINE MIR -105 157 30 5 1316 1141 213 175 19 chr6 95865016 95865336 -53651701 - MTE2b LTR MaLR -8 371 2 5 1316 23 33 0 0 chr6 95865914 95865944 -53651093 + AT_rich Low_complexity Low_complexity 1 30 0 5 1316 201 39 0 0 chr6 95866069 95866095 -53650942 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1316 617 301 20 20 chr6 95866148 95866345 -53650692 - B4A SINE B4 -95 197 1 5 1316 407 279 85 28 chr6 95866910 95867087 -53649950 + Tigger7 DNA MER2_type 2204 2390 -101 5 1316 513 0 0 0 chr6 95867095 95867152 -53649885 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1316 1893 189 82 16 chr6 95867194 95867570 -53649467 + MTD LTR MaLR 3 403 -16 5 1316 336 269 83 101 chr6 95867575 95867824 -53649213 + ORR1D2 LTR MaLR 33 292 -67 5 1316 221 300 0 0 chr6 95869752 95869802 -53647235 + (CGTG)n Simple_repeat Simple_repeat 4 53 0 5 1316 430 320 37 58 chr6 95869805 95869994 -53647043 - B4A SINE B4 -8 284 100 5 1316 290 255 180 60 chr6 95870011 95870111 -53646926 - B4A SINE B4 -177 115 4 5 1316 229 109 0 61 chr6 95870966 95871015 -53646022 + A-rich Low_complexity Low_complexity 2 47 0 5 1316 31 0 0 24 chr6 95873006 95873036 -53644001 + AT_rich Low_complexity Low_complexity 1 30 0 5 1316 5458 35 2 0 chr6 95873036 95873639 -53643398 - L1Md_T LINE L1 -2 6580 5977 5 1316 31 0 0 24 chr6 95873639 95873650 -53643387 + AT_rich Low_complexity Low_complexity 1 11 0 5 1316 663 250 36 7 chr6 95873867 95874004 -53643033 - B1F SINE Alu -2 147 7 5 1316 387 0 0 0 chr6 95874167 95874210 -53642827 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1316 1808 153 75 0 chr6 95874416 95874724 -53642313 + ORR1B1 LTR MaLR 64 394 0 5 1316 1157 262 97 16 chr6 95874732 95875217 -53641820 - L1M3 LINE L1 -844 5296 4773 5 1316 211 203 43 0 chr6 95875315 95875384 -53641653 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1316 338 253 3 37 chr6 95875464 95875554 -53641483 - PB1D10 SINE Alu -34 115 27 5 1316 338 308 14 14 chr6 95877378 95877523 -53639514 + T-rich Low_complexity Low_complexity 2 146 0 5 1316 865 319 102 33 chr6 95878027 95879613 -53637424 + L1M2 LINE L1 1839 3535 -3310 5 1316 435 290 68 1 chr6 95879701 95879907 -53637130 + L1M2 LINE L1 3519 3735 -3110 5 1316 525 295 46 21 chr6 95879931 95880170 -53636867 + L1M2 LINE L1 5146 5390 -1452 5 1316 1797 272 91 23 chr6 95880160 95881080 -53635957 + L1MA4 LINE L1 4861 5938 -362 5 1316 2487 145 83 19 chr6 95881117 95881539 -53635498 + RLTR44B LTR ERVK 1 449 0 5 1316 4318 47 0 0 chr6 95881580 95882095 -53634942 - L1Md_F2 LINE L1 -410 6172 5658 5 1316 1990 44 0 0 chr6 95882095 95882322 -53634715 + L1Md_F2 LINE L1 6344 6570 -12 5 1316 1731 151 28 22 chr6 95882522 95882841 -53634196 + ORR1A3 LTR MaLR 6 326 0 5 1316 23 33 0 0 chr6 95883437 95883467 -53633570 + AT_rich Low_complexity Low_complexity 1 30 0 6 1316 248 377 40 69 chr6 95883903 95884077 -53632960 - MER58A DNA MER1_type -25 199 31 6 1316 216 97 0 0 chr6 95885851 95885882 -53631155 + (CCCCCA)n Simple_repeat Simple_repeat 2 32 0 6 1316 448 229 56 32 chr6 95887075 95887201 -53629836 + B3A SINE B2 70 198 0 6 1316 360 335 66 41 chr6 95887844 95888040 -53628997 - MLT1G1 LTR MaLR -120 459 259 6 1316 291 264 0 0 chr6 95888230 95888321 -53628716 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 1316 1326 215 30 70 chr6 95888322 95888405 -53628632 - B4A SINE B4 0 292 225 6 1316 540 0 0 0 chr6 95888405 95888465 -53628572 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 6 1316 1222 215 30 70 chr6 95888465 95888681 -53628356 - B4A SINE B4 -68 224 5 6 1316 492 307 36 18 chr6 95889120 95889286 -53627751 - ID_B1 SINE B4 0 224 56 6 1316 195 381 48 48 chr6 95889855 95889979 -53627058 - MIRb SINE MIR -121 147 24 6 1316 239 316 100 12 chr6 95890016 95890186 -53626851 + MER5A DNA MER1_type 4 188 -1 6 1316 209 258 81 0 chr6 95890827 95890889 -53626148 + MIRb SINE MIR 54 120 -148 6 1316 247 310 42 0 chr6 95891006 95891077 -53625960 + ID4_ SINE ID 10 83 0 6 1316 351 227 0 0 chr6 95891477 95891574 -53625463 + CT-rich Low_complexity Low_complexity 3 99 0 6 1316 227 279 115 0 chr6 95891602 95891663 -53625374 - ID4 SINE ID -2 81 14 6 1316 1194 282 93 63 chr6 95891784 95892335 -53624702 - Lx6 LINE L1 -44 7416 6479 6 1316 623 313 90 0 chr6 95892332 95892533 -53624504 - Lx6 LINE L1 -687 6363 6145 6 1316 325 216 95 29 chr6 95892500 95892605 -53624432 - Lx4A LINE L1 -1200 5858 5747 6 1316 1589 178 11 0 chr6 95892611 95892880 -53624157 + Lx4A LINE L1 5459 5730 -147 6 1316 3571 196 7 26 chr6 95892879 95893455 -53623582 - Lx4A LINE L1 -638 5239 4677 6 1316 1165 82 0 0 chr6 95893455 95893602 -53623435 - B1_Mus1 SINE Alu 0 148 2 6 1316 3571 196 7 26 chr6 95893602 95893757 -53623280 - Lx4A LINE L1 -1201 4676 4522 6 1316 258 146 24 0 chr6 95894213 95894254 -53622783 - L1_Mm LINE L1 -1370 4513 4472 6 1316 180 0 0 0 chr6 95894254 95894274 -53622763 + (TTCTCC)n Simple_repeat Simple_repeat 2 21 0 6 1316 243 118 94 38 chr6 95894274 95894286 -53622751 - Lx4A LINE L1 -1413 4467 4452 6 1316 1464 39 0 0 chr6 95894286 95894465 -53622572 + (TTCTCC)n Simple_repeat Simple_repeat 1 179 0 6 1316 254 73 0 24 chr6 95894467 95894495 -53622542 + (TTC)n Simple_repeat Simple_repeat 1 28 0 6 1316 1128 88 0 0 chr6 95894495 95894643 -53622394 - B1_Mus1 SINE Alu 0 148 1 6 1316 254 73 0 24 chr6 95894643 95894656 -53622381 + (TTC)n Simple_repeat Simple_repeat 3 15 0 6 1316 339 340 10 0 chr6 95894657 95894754 -53622283 + RMER1B Other Other 417 514 -552 6 1316 666 239 7 55 chr6 95894791 95894937 -53622100 - RMER1A Other Other -891 139 10 6 1316 1358 265 13 13 chr6 95895061 95895371 -53621666 - RMER1A Other Other -706 324 15 6 1316 1643 233 57 85 chr6 95895357 95895830 -53621207 - RMER1B Other Other -560 506 47 6 1316 541 249 141 0 chr6 95896959 95897136 -53619901 - MLT1C LTR MaLR -15 452 251 6 1316 392 226 21 21 chr6 95897571 95897666 -53619371 - MTEb LTR MaLR -12 367 273 6 1316 624 201 88 22 chr6 95897704 95897841 -53619196 - MTEb LTR MaLR -231 148 3 6 1316 382 250 0 0 chr6 95897878 95897948 -53619089 - RMER21B LTR ERV1 -8 834 765 6 1316 3648 133 9 281 chr6 95897948 95898867 -53618170 - RMER21A LTR ERV1 0 947 252 6 1316 3460 30 2 129 chr6 95898867 95899362 -53617675 + RLTR10C LTR ERVK 1 432 -4 6 1316 3648 133 9 281 chr6 95899362 95899743 -53617294 - RMER21A LTR ERV1 -696 251 1 6 1316 324 127 0 0 chr6 95900052 95900107 -53616930 + (ATG)n Simple_repeat Simple_repeat 1 55 0 6 1316 626 202 0 0 chr6 95900262 95900376 -53616661 + ID_B1 SINE B4 95 208 -16 6 1316 347 73 18 0 chr6 95900376 95900431 -53616606 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 6 1316 671 322 83 40 chr6 95901071 95901443 -53615594 - MLT1G3 LTR MaLR -195 400 13 6 1316 36964 44 9 0 chr6 95901911 95907170 -53609867 + L1Md_T LINE L1 281 5586 -297 6 1316 8614 34 0 0 chr6 95907170 95908166 -53608871 + L1Md_T LINE L1 5587 6582 0 6 1316 270 28 0 0 chr6 95909390 95909426 -53607611 + RLTR10B LTR ERVK 1 36 -256 6 1316 1883 67 0 66 chr6 95909426 95909730 -53607307 + RLTR10B LTR ERVK 9 292 0 6 1316 181 200 0 83 chr6 95909744 95909804 -53607233 + MIRb SINE MIR 63 117 -151 6 1316 336 250 0 24 chr6 95910203 95910285 -53606752 - MIRb SINE MIR -103 165 86 6 1316 306 0 0 0 chr6 95911397 95911431 -53605606 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1316 292 261 136 0 chr6 95911437 95911525 -53605512 - RSINE1 SINE B4 -57 108 9 6 1316 483 18 0 0 chr6 95911525 95911581 -53605456 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1316 189 0 0 0 chr6 95911581 95911601 -53605436 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1316 263 191 48 0 chr6 95912020 95912083 -53604954 - MER53 DNA hAT -20 173 108 6 1316 310 152 26 17 chr6 95912249 95912334 -53604703 - PB1D10 SINE Alu -55 92 13 6 1316 505 348 38 62 chr6 95912447 95912815 -53604222 - MLT1B LTR MaLR -31 359 1 6 1316 359 118 13 0 chr6 95913759 95913835 -53603202 + (CAA)n Simple_repeat Simple_repeat 1 77 0 6 1316 273 209 206 15 chr6 95913915 95913983 -53603054 - ID4_ SINE ID -2 81 1 6 1316 281 283 9 36 chr6 95913996 95914106 -53602931 - PB1D10 SINE Alu -1 116 10 6 1316 255 390 71 35 chr6 95914954 95915236 -53601801 + LTR33 LTR ERVL 71 362 -153 6 1316 560 293 160 62 chr6 95915320 95915564 -53601473 + B4A SINE B4 6 273 -19 6 1316 294 328 52 22 chr6 95916613 95916747 -53600290 - L2b LINE L2 -2 3373 3236 6 1316 5640 136 16 10 chr6 95917381 95918243 -53598794 + Lx4A LINE L1 6181 7047 -11 6 1316 247 161 35 18 chr6 95919245 95919302 -53597735 - MER5A1 DNA MER1_type -54 112 55 6 1316 21 36 0 0 chr6 95919649 95919677 -53597360 + AT_rich Low_complexity Low_complexity 1 28 0 6 1316 205 200 0 20 chr6 95921040 95921091 -53595946 + A-rich Low_complexity Low_complexity 5 54 0 6 1316 1304 250 48 8 chr6 95921448 95921823 -53595214 - MTD LTR MaLR 0 419 30 6 1316 250 359 42 61 chr6 95921922 95922183 -53594854 + MLT1K LTR MaLR 34 289 -306 6 1316 185 210 0 24 chr6 95923779 95923862 -53593175 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 6 1316 284 232 24 0 chr6 95923853 95923935 -53593102 + CT-rich Low_complexity Low_complexity 1 84 0 6 1316 609 263 27 18 chr6 95923943 95924130 -53592907 - B4 SINE B4 -98 194 5 6 1316 639 0 0 0 chr6 95925490 95925561 -53591476 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 1316 926 255 133 15 chr6 95928792 95929056 -53587981 + Lx3C LINE L1 6701 6994 -6 6 1316 35990 47 1 3 chr6 95930701 95936122 -53580915 + L1Md_T LINE L1 86 5589 -297 6 1316 8650 29 1 0 chr6 95936122 95937117 -53579920 + L1Md_T LINE L1 5590 6585 0 6 1316 330 67 0 0 chr6 95939225 95939270 -53577767 + (TTA)n Simple_repeat Simple_repeat 2 46 0 6 1316 21 0 0 0 chr6 95939832 95939853 -53577184 + AT_rich Low_complexity Low_complexity 1 21 0 6 1316 559 26 26 0 chr6 95940390 95940467 -53576570 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 1316 992 313 48 13 chr6 95940487 95940859 -53576178 - Lx9 LINE L1 -208 7436 7052 6 1316 313 336 206 53 chr6 95940852 95941308 -53575729 + L1M4 LINE L1 317 842 -5700 6 1316 1347 243 28 80 chr6 95941449 95941523 -53575514 - MTEa LTR MaLR -1 378 315 6 1316 696 20 20 0 chr6 95941523 95941621 -53575416 + L1Md_T LINE L1 6483 6582 0 6 1316 1347 243 28 80 chr6 95941621 95941945 -53575092 - MTEa LTR MaLR -65 314 1 6 1316 1732 301 146 23 chr6 95941947 95942682 -53574355 - MTEa-int LTR MaLR -2 1578 754 6 1316 1182 302 73 37 chr6 95942712 95943194 -53573843 - MTEa-int LTR MaLR -963 617 119 6 1316 1116 216 57 33 chr6 95943229 95943530 -53573507 - MTEa LTR MaLR -64 315 8 6 1316 26 50 0 0 chr6 95943580 95943620 -53573417 + AT_rich Low_complexity Low_complexity 1 40 0 6 1316 1104 214 5 14 chr6 95943632 95943855 -53573182 - ID_B1 SINE B4 -1 223 3 6 1316 456 292 21 34 chr6 95943857 95944091 -53572946 + L1M4 LINE L1 1037 1267 -5275 6 1316 469 275 65 19 chr6 95944167 95944382 -53572655 - L1M4 LINE L1 -1195 4951 4727 6 1317 395 315 37 106 chr6 95945024 95945269 -53571768 + MLT1C LTR MaLR 1 228 -162 6 1317 1589 231 113 0 chr6 95945295 95945659 -53571378 - MTD LTR MaLR -12 407 3 6 1317 248 306 62 18 chr6 95945821 95945929 -53571108 + L2a LINE L2 3234 3399 -27 6 1317 250 328 15 50 chr6 95946394 95946519 -53570518 + MER5B DNA MER1_type 7 137 -52 6 1317 2152 63 201 0 chr6 95946651 95946950 -53570087 - RLTR10D LTR ERVK 0 359 1 6 1317 1008 275 12 12 chr6 95948203 95948450 -53568587 + B4A SINE B4 3 249 -43 6 1317 225 191 74 57 chr6 95948612 95948734 -53568303 - L1MC5 LINE L1 -227 7734 7611 6 1317 225 0 0 0 chr6 95948740 95948765 -53568272 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1317 363 105 0 0 chr6 95948765 95948822 -53568215 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1317 189 214 0 0 chr6 95949147 95949189 -53567848 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1317 297 0 0 0 chr6 95949189 95949222 -53567815 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1317 215 191 15 0 chr6 95949273 95949341 -53567696 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1317 221 208 0 20 chr6 95951981 95952030 -53565007 + T-rich Low_complexity Low_complexity 4 51 0 6 1317 6363 65 16 0 chr6 95952144 95952960 -53564077 - L1_Mus1 LINE L1 0 6567 5739 6 1317 7657 50 5 2 chr6 95952981 95954649 -53562388 - L1Md_F2 LINE L1 0 6582 4913 6 1317 3294 88 2 8 chr6 95954637 95955116 -53561921 - L1_Mm LINE L1 -147 5736 5261 6 1317 340 274 250 0 chr6 95955357 95955481 -53561556 + RSINE1 SINE B4 3 157 -8 6 1317 3909 160 55 27 chr6 95956797 95957528 -53559509 + Lx3C LINE L1 6223 6973 -3 6 1317 360 0 0 0 chr6 95957535 95957575 -53559462 + (TAA)n Simple_repeat Simple_repeat 3 42 0 6 1317 237 411 35 0 chr6 95958004 95958145 -53558892 + MIRb SINE MIR 21 166 -102 6 1317 701 265 60 103 chr6 95960808 95961090 -53555947 + B4 SINE B4 4 273 -19 6 1317 207 162 0 0 chr6 95961123 95961160 -53555877 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1317 369 0 0 0 chr6 95961996 95962037 -53555000 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1317 679 252 147 50 chr6 95962039 95962091 -53554946 - B4A SINE B4 -30 262 216 6 1317 468 0 0 0 chr6 95962091 95962143 -53554894 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 7 1317 679 252 147 50 chr6 95962143 95962328 -53554709 - B4A SINE B4 -77 215 2 6 1317 259 364 36 57 chr6 95962475 95962615 -53554422 + LTR86B2 LTR ERVL 165 301 -186 7 1317 748 159 17 11 chr6 95962637 95962815 -53554222 + (TA)n Simple_repeat Simple_repeat 2 180 0 7 1317 572 205 25 0 chr6 95962872 95963033 -53554004 + (TA)n Simple_repeat Simple_repeat 1 165 0 7 1317 270 226 0 31 chr6 95963036 95963100 -53553937 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 7 1317 400 366 114 52 chr6 95963134 95963676 -53553361 + MER76 LTR ERVL 23 598 -93 7 1317 662 273 66 44 chr6 95963922 95963982 -53553055 - B4A SINE B4 -14 278 225 7 1317 225 65 0 0 chr6 95963982 95964013 -53553024 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1317 662 273 66 44 chr6 95964013 95964224 -53552813 - B4A SINE B4 -68 224 1 7 1317 214 182 0 22 chr6 95964553 95964598 -53552439 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1317 1134 266 20 43 chr6 95964600 95964899 -53552138 - B4A SINE B4 0 292 1 7 1317 402 357 57 47 chr6 95964951 95965248 -53551789 + MLT1D LTR MaLR 42 341 -70 7 1317 904 316 66 12 chr6 95965478 95965888 -53551149 - Lx7 LINE L1 -394 7302 6871 7 1317 2770 66 87 3 chr6 95965905 95966272 -53550765 + MTB LTR MaLR 3 400 0 7 1317 1955 112 39 66 chr6 95966295 95966628 -53550409 + ORR1A3 LTR MaLR 1 324 -2 7 1317 870 206 138 21 chr6 95966662 95966851 -53550186 + B3 SINE B2 6 216 0 7 1317 407 293 62 86 chr6 95966936 95967145 -53549892 + ID_B1 SINE B4 15 218 -6 7 1317 828 173 0 0 chr6 95967180 95967379 -53549658 + (TA)n Simple_repeat Simple_repeat 1 199 0 7 1317 466 324 4 51 chr6 95969401 95969580 -53547457 + MLT1D LTR MaLR 346 517 -43 7 1317 8581 9 0 0 chr6 95970003 95971410 -53545627 - L1Md_T LINE L1 0 6582 5219 7 1317 10489 23 0 0 chr6 95971410 95972696 -53544341 + L1Md_T LINE L1 3918 5203 -680 7 1317 619 277 18 28 chr6 95973720 95973940 -53543097 - MTEb LTR MaLR 0 379 145 7 1317 1507 300 94 12 chr6 95974100 95974694 -53542343 - Lx8 LINE L1 -7 7466 6824 7 1317 787 314 37 55 chr6 95975571 95975844 -53541193 - B4 SINE B4 0 292 25 7 1317 338 340 35 28 chr6 95976510 95976655 -53540382 + B1F2 SINE Alu 1 146 -3 7 1317 254 358 0 0 chr6 95976664 95976745 -53540292 + ID4 SINE ID 1 81 -2 7 1317 408 122 0 0 chr6 95976748 95976830 -53540207 + (CAGG)n Simple_repeat Simple_repeat 2 83 0 7 1317 700 42 10 10 chr6 95976828 95976925 -53540112 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 7 1317 335 302 81 32 chr6 95976973 95977158 -53539879 - MLT1A LTR MaLR -8 366 173 7 1317 183 80 0 0 chr6 95977768 95977793 -53539244 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1317 234 0 0 0 chr6 95978140 95978166 -53538871 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1317 387 320 70 25 chr6 95979131 95979288 -53537749 + B4A SINE B4 6 169 -123 7 1317 486 0 0 0 chr6 95979696 95979750 -53537287 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1317 485 277 86 19 chr6 95979787 95980034 -53537003 - Lx9 LINE L1 -290 7354 6997 7 1317 358 269 73 9 chr6 95980045 95980154 -53536883 - Lx9 LINE L1 -716 6928 6813 7 1317 1111 282 112 0 chr6 95980161 95980573 -53536464 - L1M4c LINE L1 -179 5937 5480 7 1317 370 160 167 20 chr6 95980621 95980723 -53536314 - Lx6 LINE L1 -2 7458 7342 7 1317 2745 115 19 12 chr6 95980725 95981208 -53535829 + L1_Mur3 LINE L1 3519 4004 -1876 7 1317 589 262 72 8 chr6 95981214 95981343 -53535694 - L1M4c LINE L1 -628 5488 5349 7 1317 988 140 17 28 chr6 95981343 95981519 -53535518 - B2_Mm2 SINE B2 -19 176 3 7 1317 589 275 160 10 chr6 95981519 95981725 -53535312 - L1M4c LINE L1 -764 5352 5131 7 1317 475 78 0 0 chr6 95981727 95981804 -53535233 - Lx LINE L1 -42 6612 6536 7 1317 3592 99 37 0 chr6 95981812 95982615 -53534422 - Lx LINE L1 -573 6081 5245 7 1317 405 258 58 0 chr6 95982615 95982770 -53534267 - L1M4c LINE L1 -3181 2935 2772 7 1317 423 254 51 0 chr6 95983369 95983507 -53533530 - L1M4c LINE L1 -3447 2669 2525 7 1317 365 103 0 14 chr6 95983517 95983586 -53533451 + (TTTTTG)n Simple_repeat Simple_repeat 4 71 0 7 1317 1131 76 7 0 chr6 95983586 95983731 -53533306 - B1_Mus1 SINE Alu 0 148 3 7 1317 2815 86 0 39 chr6 95983749 95984159 -53532878 - L1_Mus2 LINE L1 -4 6562 6169 7 1317 632 255 24 15 chr6 95984162 95984406 -53532631 - L1M4c LINE L1 -3582 2534 2317 7 1317 1690 255 47 63 chr6 95984583 95985582 -53531455 - L1_Rod LINE L1 -2100 3747 2765 7 1317 22 88 0 0 chr6 95985966 95986023 -53531014 + AT_rich Low_complexity Low_complexity 1 57 0 7 1317 743 277 0 47 chr6 95986314 95986507 -53530530 + B3A SINE B2 15 198 0 7 1317 410 335 111 46 chr6 95986705 95987093 -53529944 + L1MD2 LINE L1 5405 5817 -542 7 1317 1872 261 151 19 chr6 95987097 95987745 -53529292 + Lx6 LINE L1 6701 7434 -26 7 1317 252 77 0 0 chr6 95987776 95987815 -53529222 + (TATG)n Simple_repeat Simple_repeat 4 42 0 7 1317 301 311 24 120 chr6 95987836 95988044 -53528993 + L1MD2 LINE L1 5882 6069 -290 7 1317 265 268 30 20 chr6 95988168 95988267 -53528770 + L1MD2 LINE L1 6121 6220 -22 7 1317 329 303 103 29 chr6 95988944 95989080 -53527957 + B3A SINE B2 5 150 -48 7 1317 890 315 59 32 chr6 95989314 95989786 -53527251 + Lx8 LINE L1 6987 7471 -2 7 1317 753 254 98 26 chr6 95990393 95990587 -53526450 + B3 SINE B2 2 209 -7 7 1317 194 261 171 0 chr6 95990657 95990745 -53526292 + MIR SINE MIR 96 198 -64 7 1317 315 122 0 0 chr6 95990749 95990798 -53526239 + (TTA)n Simple_repeat Simple_repeat 1 49 0 7 1317 1070 110 0 0 chr6 95990798 95990943 -53526094 - B1_Mm SINE Alu -2 145 1 7 1317 432 0 0 0 chr6 95990950 95990998 -53526039 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 7 1317 491 302 55 6 chr6 95990998 95991154 -53525883 - B3A SINE B2 -39 177 1 7 1317 588 40 0 0 chr6 95992057 95992132 -53524905 + (TC)n Simple_repeat Simple_repeat 2 76 0 7 1317 342 0 0 0 chr6 95992132 95992169 -53524868 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1317 264 268 14 40 chr6 95992203 95992277 -53524760 - B4 SINE B4 -7 285 214 7 1317 354 343 16 73 chr6 95992311 95992503 -53524534 - B3A SINE B2 -16 182 2 7 1317 450 256 81 49 chr6 95992533 95992656 -53524381 - B4 SINE B4 -83 209 83 7 1317 207 175 0 0 chr6 95992656 95992696 -53524341 + (CTTG)n Simple_repeat Simple_repeat 2 41 0 7 1317 932 96 0 7 chr6 95992697 95992844 -53524193 + (TCCC)n Simple_repeat Simple_repeat 4 149 0 7 1317 495 0 0 0 chr6 95992844 95992898 -53524139 + (TTTC)n Simple_repeat Simple_repeat 1 55 0 7 1317 308 259 24 47 chr6 95993472 95993557 -53523480 + ID4 SINE ID 1 83 0 7 1317 231 253 0 0 chr6 95994556 95994635 -53522402 + CT-rich Low_complexity Low_complexity 1 79 0 7 1317 340 281 0 58 chr6 95994984 95995071 -53521966 - B3A SINE B2 -116 82 1 7 1317 237 98 0 0 chr6 95995314 95995355 -53521682 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1317 945 76 145 6 chr6 95995508 95995680 -53521357 - L1_Mus3 LINE L1 -1 6637 6442 7 1317 931 243 108 91 chr6 95995869 95996222 -53520815 + MTE2a LTR MaLR 1 359 -20 7 1317 386 197 24 8 chr6 95996900 95997023 -53520014 + (TG)n Simple_repeat Simple_repeat 2 126 0 7 1317 662 288 82 22 chr6 95998547 95999038 -53517999 - L1MA6 LINE L1 -5 6295 5776 7 1317 285 150 22 55 chr6 95999053 95999236 -53517801 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 7 1317 227 113 30 61 chr6 95999271 95999337 -53517700 + (TA)n Simple_repeat Simple_repeat 1 64 0 7 1317 321 279 34 23 chr6 95999451 95999539 -53517498 - PB1D10 SINE Alu 0 117 29 7 1317 511 329 53 28 chr6 95999751 95999998 -53517039 + Tigger6b DNA MER2_type 181 433 -1164 7 1317 285 319 144 19 chr6 96000001 96000321 -53516716 + Tigger6a DNA MER2_type 437 796 -287 1 1317 396 383 16 11 chr6 96000383 96000573 -53516464 - MLT1B LTR MaLR 0 390 200 2 1317 485 272 127 23 chr6 96000977 96001150 -53515887 - MTEa LTR MaLR 0 379 189 3 1317 29 28 0 0 chr6 96001300 96001336 -53515701 + AT_rich Low_complexity Low_complexity 1 36 0 4 1317 302 278 69 31 chr6 96001489 96001649 -53515388 + L1M5 LINE L1 2330 2495 -3651 5 1317 258 390 9 0 chr6 96001664 96001769 -53515268 + PB1D10 SINE Alu 7 112 -5 6 1317 1333 266 47 30 chr6 96002523 96003097 -53513940 - L1_Mur3 LINE L1 -1083 4797 4214 7 1317 1305 260 61 86 chr6 96003104 96003938 -53513099 + Lx8 LINE L1 4999 5811 -36 8 1317 520 287 46 5 chr6 96004185 96004381 -53512656 + Lx8 LINE L1 6163 6366 -1107 8 1317 835 222 57 78 chr6 96004381 96004611 -53512426 - MTC LTR MaLR -2 419 195 9 1317 387 0 0 0 chr6 96004636 96004679 -53512358 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1317 1521 279 123 0 chr6 96004680 96005225 -53511812 + Lx8 LINE L1 6525 7136 -337 8 1317 1787 202 45 6 chr6 96005244 96005597 -53511440 + ORR1D1 LTR MaLR 2 368 -6 1 1317 488 257 196 54 chr6 96005613 96005889 -53511148 + Lx8 LINE L1 7154 7468 -5 8 1317 241 205 101 13 chr6 96006413 96006492 -53510545 - L1MA9 LINE L1 -173 6139 6054 1 1317 473 280 9 0 chr6 96006808 96006915 -53510122 + ID_B1 SINE B4 80 187 -37 1 1317 414 300 15 24 chr6 96006958 96007163 -53509874 + L1M5 LINE L1 4528 4730 -1416 5 1317 230 327 18 55 chr6 96007420 96007530 -53509507 - MLT1C LTR MaLR -193 274 169 1 1317 412 338 23 47 chr6 96007763 96007977 -53509060 + L1M5 LINE L1 5185 5393 -753 5 1317 22 0 0 0 chr6 96008719 96008741 -53508296 + AT_rich Low_complexity Low_complexity 1 22 0 1 1317 2569 204 57 0 chr6 96008821 96009327 -53507710 - Lx6 LINE L1 -5 7455 6921 1 1317 3277 197 33 11 chr6 96009327 96009965 -53507072 + Lx6 LINE L1 6218 6869 -591 1 1317 237 307 44 62 chr6 96010677 96010837 -53506200 - MIRc SINE MIR -19 249 93 1 1317 475 355 20 0 chr6 96011535 96011732 -53505305 + MIR SINE MIR 44 244 -18 1 1317 495 288 91 30 chr6 96012824 96013021 -53504016 + MER20 DNA MER1_type 4 212 -7 1 1317 1477 256 41 56 chr6 96013397 96014211 -53502826 - Lx9 LINE L1 -1397 6247 5323 2 1317 806 238 23 37 chr6 96015407 96015621 -53501416 - B3 SINE B2 -5 211 1 2 1317 692 264 44 39 chr6 96015883 96016088 -53500949 - B3 SINE B2 -9 207 2 2 1317 651 75 0 48 chr6 96016224 96016350 -53500687 + (TTCTC)n Simple_repeat Simple_repeat 5 124 0 2 1317 234 0 0 0 chr6 96016350 96016376 -53500661 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1317 542 247 6 0 chr6 96016757 96016919 -53500118 + (TATATG)n Simple_repeat Simple_repeat 3 165 0 2 1317 21 0 0 0 chr6 96017480 96017501 -53499536 + AT_rich Low_complexity Low_complexity 1 21 0 2 1317 761 175 0 6 chr6 96017838 96018005 -53499032 + CT-rich Low_complexity Low_complexity 4 169 0 2 1317 404 271 21 0 chr6 96018046 96018142 -53498895 - PB1D10 SINE Alu -16 101 4 2 1317 273 234 150 21 chr6 96018206 96018346 -53498691 + L1MA5 LINE L1 6139 6296 -4 2 1317 501 201 36 75 chr6 96018380 96018547 -53498490 + RLTR20D LTR ERVK 162 462 -106 3 1317 3400 83 4 2 chr6 96018549 96019095 -53497942 - Lx3_Mus LINE L1 -1065 5944 5401 3 1317 7561 85 8 2 chr6 96019095 96020139 -53496898 + Lx3_Mus LINE L1 5948 6997 -12 3 1317 1138 40 13 7 chr6 96020146 96020298 -53496739 + (GAAA)n Simple_repeat Simple_repeat 4 156 0 3 1317 204 40 0 0 chr6 96020298 96020323 -53496714 + (CAAAAA)n Simple_repeat Simple_repeat 1 25 0 3 1317 420 250 19 37 chr6 96020323 96020431 -53496606 + RLTR20D LTR ERVK 422 558 -10 3 1317 23 33 0 0 chr6 96020914 96020944 -53496093 + AT_rich Low_complexity Low_complexity 1 30 0 3 1317 1436 227 40 30 chr6 96023978 96024422 -53492615 - Lx7 LINE L1 -1685 6011 5587 3 1317 864 306 84 30 chr6 96024767 96025030 -53492007 - B4A SINE B4 -14 278 2 3 1317 426 287 0 58 chr6 96025071 96025208 -53491829 - Charlie4z DNA MER1_type -27 140 12 3 1317 182 298 70 0 chr6 96025369 96025426 -53491611 - L4 LINE RTE -720 1309 1249 3 1317 295 23 0 43 chr6 96026648 96026694 -53490343 + (TAA)n Simple_repeat Simple_repeat 3 46 0 3 1317 3082 54 21 3 chr6 96026698 96027087 -53489950 + MTA_Mm LTR MaLR 1 396 0 4 1317 2463 102 8 117 chr6 96027173 96027651 -53489386 - RLTR23 LTR ERV1 -4 426 1 4 1317 429 304 64 70 chr6 96027744 96028087 -53488950 - RNERVK23-int LTR ERVK -463 7754 7414 4 1317 425 320 0 34 chr6 96027947 96028154 -53488883 - MMERGLN-int LTR ERV1 -334 7222 7023 4 1317 1254 304 50 20 chr6 96028841 96029635 -53487402 - MuRRS4-int LTR ERV1 -1043 4020 3527 4 1317 692 310 51 42 chr6 96029971 96030647 -53486390 - MMERGLN-int LTR ERV1 -3155 4451 3746 4 1317 599 319 23 38 chr6 96030679 96031073 -53485964 - MuRRS4-int LTR ERV1 -3618 1445 1058 4 1317 2158 146 43 116 chr6 96032096 96032560 -53484477 - RLTR23 LTR ERV1 0 430 1 4 1317 2161 156 12 32 chr6 96033251 96033656 -53483381 + RMER10B LTR ERVL 2 398 0 4 1317 369 0 0 0 chr6 96035409 96035450 -53481587 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1317 236 72 0 45 chr6 96035525 96035569 -53481468 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1317 1065 190 19 0 chr6 96036281 96036486 -53480551 - Lx9 LINE L1 -460 7184 6976 5 1317 333 0 0 0 chr6 96036495 96036532 -53480505 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1317 354 157 36 0 chr6 96036587 96036670 -53480367 + GA-rich Low_complexity Low_complexity 2 87 0 5 1317 255 31 0 0 chr6 96036975 96037007 -53480030 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1317 245 304 34 55 chr6 96037069 96037215 -53479822 + L2a LINE L2 2717 2859 -560 5 1317 265 340 65 47 chr6 96037275 96037445 -53479592 + MER5A DNA MER1_type 17 189 0 5 1317 338 274 60 63 chr6 96037445 96037624 -53479413 - MLT1C LTR MaLR -207 183 8 5 1317 221 343 42 56 chr6 96037640 96037853 -53479184 + L2a LINE L2 3205 3414 -12 5 1317 204 282 0 34 chr6 96038232 96038320 -53478717 + (TTTA)n Simple_repeat Simple_repeat 2 86 0 5 1317 399 41 0 0 chr6 96038331 96038380 -53478657 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 5 1317 2428 192 102 25 chr6 96039053 96039683 -53477354 + RLTR40 LTR ERVK 1 678 -139 5 1317 1115 204 0 108 chr6 96039679 96039938 -53477099 + RLTR40 LTR ERVK 566 796 -21 6 1317 241 330 69 10 chr6 96041744 96041845 -53475192 + MLT1A1 LTR MaLR 297 403 -5 6 1317 267 379 29 10 chr6 96043487 96043591 -53473446 + L2a LINE L2 3293 3398 -28 6 1317 472 202 15 8 chr6 96044350 96044480 -53472557 + CT-rich Low_complexity Low_complexity 3 133 0 6 1317 227 329 35 104 chr6 96044642 96044815 -53472222 - LTR16D1 LTR ERVL -406 269 109 6 1317 776 239 94 16 chr6 96045015 96045206 -53471831 + B3 SINE B2 1 206 -10 6 1317 753 43 0 0 chr6 96045227 96045320 -53471717 + (TC)n Simple_repeat Simple_repeat 2 94 0 6 1317 181 346 50 93 chr6 96046851 96046991 -53470046 + MIR3 SINE MIR 12 145 -63 6 1317 564 322 10 71 chr6 96046997 96047194 -53469843 + B4A SINE B4 1 185 -107 6 1317 183 115 0 0 chr6 96047782 96047808 -53469229 + MIR SINE MIR 226 251 -11 6 1317 547 228 16 24 chr6 96047945 96048071 -53468966 - MER5B DNA MER1_type 0 178 54 7 1317 186 103 0 0 chr6 96048616 96048645 -53468392 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 7 1317 270 342 0 0 chr6 96048648 96048727 -53468310 - L2a LINE L2 -9 3417 3339 7 1317 1270 92 27 0 chr6 96048993 96049178 -53467859 - B2_Mm2 SINE B2 -4 191 2 7 1317 233 300 119 10 chr6 96049209 96049310 -53467727 + PB1D9 SINE Alu 1 112 -8 7 1317 333 286 82 15 chr6 96050552 96050687 -53466350 - B1F SINE Alu -5 144 1 7 1317 369 0 0 0 chr6 96051201 96051242 -53465795 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1317 22 35 0 0 chr6 96051365 96051394 -53465643 + AT_rich Low_complexity Low_complexity 1 29 0 7 1317 501 304 117 77 chr6 96051954 96052346 -53464691 - MLT1A1 LTR MaLR 0 408 1 7 1317 555 240 10 128 chr6 96052433 96052629 -53464408 - MER3 DNA MER1_type -4 205 33 7 1317 600 289 83 80 chr6 96052641 96052930 -53464107 - B4 SINE B4 0 292 3 8 1317 920 193 236 29 chr6 96053257 96053420 -53463617 - ORR1D1 LTR MaLR 0 374 185 8 1317 705 129 0 0 chr6 96053420 96053559 -53463478 + (CA)n Simple_repeat Simple_repeat 2 140 0 8 1317 369 0 0 0 chr6 96053559 96053599 -53463438 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 1317 920 193 236 29 chr6 96053599 96053743 -53463294 - ORR1D1 LTR MaLR -190 184 3 8 1317 931 294 113 14 chr6 96054289 96054634 -53462403 - MTE2b LTR MaLR 0 379 1 8 1317 708 79 289 0 chr6 96055149 96055263 -53461774 - B1_Mus1 SINE Alu -1 147 1 8 1317 189 0 0 0 chr6 96055266 96055287 -53461750 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1317 7148 94 15 4 chr6 96055287 96056325 -53460712 + L1_Mus3 LINE L1 5589 6638 0 8 1317 514 366 73 19 chr6 96056457 96056716 -53460321 - B4A SINE B4 -4 288 16 8 1317 1161 204 0 9 chr6 96057294 96057512 -53459525 - B3 SINE B2 0 216 1 8 1317 218 173 0 85 chr6 96057552 96057634 -53459403 + T-rich Low_complexity Low_complexity 3 77 0 9 1317 802 281 62 140 chr6 96058174 96058232 -53458805 - ORR1E LTR MaLR 0 370 317 9 1317 656 209 0 56 chr6 96058232 96058374 -53458663 + B1_Mur1 SINE Alu 1 134 -15 9 1317 1124 281 62 140 chr6 96058374 96058716 -53458321 - ORR1E LTR MaLR -54 316 1 9 1317 203 279 16 0 chr6 96059001 96059062 -53457975 + GA-rich Low_complexity Low_complexity 2 63 0 9 1317 181 53 25 50 chr6 96059192 96059232 -53457805 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1317 386 282 80 18 chr6 96059759 96059871 -53457166 + B3A SINE B2 14 132 -63 9 1317 363 44 0 0 chr6 96059876 96059921 -53457116 + (TATG)n Simple_repeat Simple_repeat 3 47 0 9 1317 623 247 196 25 chr6 96061074 96061319 -53455718 + B4A SINE B4 4 290 -2 9 1317 286 177 38 0 chr6 96061900 96061979 -53455058 + GA-rich Low_complexity Low_complexity 2 83 0 9 1317 194 293 12 85 chr6 96062205 96062287 -53454750 + L2c LINE L2 3283 3358 -29 9 1317 210 139 0 0 chr6 96062911 96062947 -53454090 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1317 252 86 0 0 chr6 96063409 96063444 -53453593 + (TTTTC)n Simple_repeat Simple_repeat 4 38 0 1 1317 876 133 0 0 chr6 96063775 96063918 -53453119 + (GAAA)n Simple_repeat Simple_repeat 1 143 0 1 1317 22 0 0 0 chr6 96065194 96065216 -53451821 + AT_rich Low_complexity Low_complexity 1 22 0 1 1317 279 0 0 0 chr6 96065911 96065942 -53451095 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1317 229 284 36 36 chr6 96067786 96067870 -53449167 + MIR SINE MIR 66 149 -59 1 1317 234 356 0 26 chr6 96071218 96071371 -53445666 + L1MC LINE L1 5746 5894 -1988 1 1317 431 314 44 44 chr6 96071671 96071854 -53445183 - B3A SINE B2 -6 210 28 1 1317 1089 46 0 32 chr6 96071854 96072010 -53445027 + L1Md_A LINE L1 6431 6581 -1 1 1317 328 287 31 21 chr6 96072116 96072212 -53444825 - RMER15 LTR ERVL -108 467 371 1 1317 278 371 8 0 chr6 96072258 96072382 -53444655 - Lx8 LINE L1 -286 7187 7063 1 1317 423 0 0 0 chr6 96073002 96073049 -53443988 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1317 201 208 0 20 chr6 96073148 96073197 -53443840 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1317 24 32 0 0 chr6 96075011 96075042 -53441995 + AT_rich Low_complexity Low_complexity 1 31 0 1 1317 21 0 0 0 chr6 96075125 96075146 -53441891 + AT_rich Low_complexity Low_complexity 1 21 0 1 1317 1010 252 94 16 chr6 96075304 96075667 -53441370 + Charlie20a DNA Charlie 223 613 -194 1 164 384 304 88 0 chr6 96075689 96075791 -53441246 + ID_B1 SINE B4 23 133 -91 1 1318 231 343 121 0 chr6 96076108 96076207 -53440830 + Charlie20a DNA Charlie 696 806 -1 1 1318 338 0 0 23 chr6 96077054 96077097 -53439940 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1318 231 333 25 58 chr6 96078330 96078451 -53438586 - MER117 DNA MER1_type 0 197 81 1 1318 208 53 53 0 chr6 96078482 96078520 -53438517 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1318 509 239 172 11 chr6 96078707 96078893 -53438144 + B3 SINE B2 1 216 0 1 1318 211 340 0 0 chr6 96079884 96079937 -53437100 - ID4_ SINE ID -15 68 16 1 1318 917 292 10 37 chr6 96080164 96080459 -53436578 + B4A SINE B4 2 288 -4 1 1318 422 312 63 15 chr6 96080519 96080724 -53436313 + ID_B1 SINE B4 4 218 -6 1 1318 396 0 0 0 chr6 96081440 96081484 -53435553 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1318 253 366 65 42 chr6 96081933 96082147 -53434890 - MIRb SINE MIR -16 252 34 1 1318 23 0 0 0 chr6 96083032 96083055 -53433982 + AT_rich Low_complexity Low_complexity 1 23 0 1 1318 247 358 25 8 chr6 96083989 96084110 -53432927 + L2 LINE L2 2477 2599 -820 1 1318 490 326 174 30 chr6 96084114 96084880 -53432157 + L2a LINE L2 2473 3346 -80 1 1318 201 292 99 0 chr6 96085498 96085583 -53431454 - MIR SINE MIR -160 102 10 1 1318 182 59 0 81 chr6 96085743 96085780 -53431257 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1318 222 212 22 45 chr6 96085898 96085987 -53431050 + A-rich Low_complexity Low_complexity 6 92 0 1 1318 343 381 26 26 chr6 96086339 96086571 -53430466 - L3 LINE CR1 -573 3916 3685 1 1318 213 272 46 123 chr6 96086755 96086885 -53430152 + B3A SINE B2 1 120 -78 1 1318 836 306 50 29 chr6 96086789 96087031 -53430006 + B4A SINE B4 30 276 -16 1 1318 333 0 0 0 chr6 96087069 96087106 -53429931 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1318 289 297 103 56 chr6 96087470 96087702 -53429335 - MLT1D LTR MaLR -205 300 58 1 1318 448 318 50 18 chr6 96087811 96088032 -53429005 - Charlie5 DNA MER1_type -143 2481 2254 1 1318 274 280 32 21 chr6 96088049 96088144 -53428893 - Charlie5 DNA MER1_type -2497 127 32 1 1318 222 169 30 15 chr6 96090681 96090747 -53426290 + CT-rich Low_complexity Low_complexity 3 69 0 1 1318 1151 102 0 6 chr6 96090891 96091069 -53425968 + (TCCCC)n Simple_repeat Simple_repeat 1 177 0 1 1318 230 176 20 0 chr6 96091073 96091124 -53425913 + CT-rich Low_complexity Low_complexity 5 56 0 1 1318 192 353 29 0 chr6 96092601 96092669 -53424368 - MIRb SINE MIR -172 96 27 1 1318 627 317 71 64 chr6 96092734 96093000 -53424037 + B4A SINE B4 2 269 -23 1 1318 324 0 0 0 chr6 96093018 96093054 -53423983 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1318 964 165 157 20 chr6 96093563 96093761 -53423276 + URR1B DNA MER1_type 1 225 0 1 1318 417 304 76 28 chr6 96094384 96094797 -53422240 + L1ME1 LINE L1 5573 6010 -164 1 1318 219 36 0 0 chr6 96095372 96095400 -53421637 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1318 857 261 35 25 chr6 96095910 96096193 -53420844 + Charlie26a DNA MER1_type 3 288 -37 1 1318 528 16 0 0 chr6 96097098 96097159 -53419878 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 1 1318 426 213 0 0 chr6 96097159 96097253 -53419784 + CT-rich Low_complexity Low_complexity 5 98 0 1 1318 22 0 0 0 chr6 96097293 96097315 -53419722 + AT_rich Low_complexity Low_complexity 1 22 0 1 1318 595 225 183 21 chr6 96097319 96097505 -53419532 + B3 SINE B2 1 216 0 1 1318 306 0 0 0 chr6 96098122 96098156 -53418881 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1318 421 359 102 40 chr6 96098293 96098615 -53418422 - LTR16E1 LTR ERVL -11 527 186 1 1318 1105 267 102 10 chr6 96098989 96099310 -53417727 + MTD LTR MaLR 28 375 -44 1 1318 30 27 0 0 chr6 96099427 96099464 -53417573 + AT_rich Low_complexity Low_complexity 1 37 0 1 1318 316 286 92 38 chr6 96099676 96099737 -53417300 + B4A SINE B4 19 86 -206 1 1318 487 167 26 0 chr6 96099737 96099815 -53417222 + B1_Mur4 SINE Alu 1 80 -70 1 1318 554 95 36 0 chr6 96100285 96100369 -53416668 + RLTR12A LTR ERVK 129 215 -353 1 1318 233 310 99 85 chr6 96100450 96100591 -53416446 + B1F1 SINE Alu 5 147 -2 1 1318 234 0 0 0 chr6 96101279 96101311 -53415726 + RLTR10 LTR ERVK 1 32 -358 1 1318 4240 27 2 0 chr6 96101311 96101834 -53415203 - RLTR10-int LTR ERVK -1448 539 16 1 1318 247 54 27 0 chr6 96101869 96101906 -53415131 - RLTR10B LTR ERVK 0 292 255 1 1318 1750 33 0 0 chr6 96101906 96102119 -53414918 + RLTR10-int LTR ERVK 1772 1984 -3 1 1318 2295 36 2 281 chr6 96102121 96102659 -53414378 + RLTR10 LTR ERVK 1 388 -2 1 1318 387 37 0 0 chr6 96102695 96102749 -53414288 + RLTR10-int LTR ERVK 16 69 -1918 1 1318 2645 43 37 0 chr6 96102766 96103115 -53413922 - IAPLTR1_Mm LTR ERVK -5 362 1 1 1318 453 36 0 0 chr6 96103127 96103182 -53413855 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 1 1318 654 262 109 5 chr6 96103194 96103386 -53413651 - B3 SINE B2 0 216 5 1 1318 322 296 82 0 chr6 96103683 96103774 -53413263 - PB1D10 SINE Alu -49 100 1 1 1318 272 342 118 26 chr6 96104461 96104656 -53412381 - MLT1H LTR MaLR -305 244 32 1 1318 437 340 70 19 chr6 96105816 96106029 -53411008 - MIRb SINE MIR -12 256 33 1 1318 22 35 0 0 chr6 96106220 96106249 -53410788 + AT_rich Low_complexity Low_complexity 1 29 0 1 1318 962 304 45 40 chr6 96106577 96106954 -53410083 - Lx8 LINE L1 -250 7223 6845 1 1318 229 211 18 71 chr6 96107089 96107145 -53409892 - MLT1M LTR MaLR -4 668 616 1 1318 196 419 9 0 chr6 96108552 96108657 -53408380 + MIRb SINE MIR 26 131 -137 1 1318 384 361 47 10 chr6 96108682 96108875 -53408162 - LTR16C LTR ERVL -3 486 287 1 1318 422 20 0 0 chr6 96109473 96109522 -53407515 + L1Md_F2 LINE L1 5537 5585 -298 1 1318 8373 33 3 0 chr6 96109523 96110516 -53406521 + L1Md_F2 LINE L1 5587 6582 0 1 1318 273 283 52 34 chr6 96111050 96111169 -53405868 + MIR SINE MIR 131 255 -7 1 1318 263 258 62 31 chr6 96111342 96111438 -53405599 + MER20 DNA MER1_type 34 132 -87 1 1318 298 146 0 0 chr6 96112168 96112216 -53404821 + Lx8 LINE L1 6713 6760 -713 1 1318 513 341 60 41 chr6 96112213 96112681 -53404356 - Lx8 LINE L1 -2 7471 6995 1 1318 742 320 137 5 chr6 96112683 96113128 -53403909 + Lx8 LINE L1 6822 7325 -148 1 1318 1236 162 32 0 chr6 96113999 96114215 -53402822 + URR1B DNA MER1_type 1 223 -2 1 1318 24 85 0 0 chr6 96114437 96114496 -53402541 + AT_rich Low_complexity Low_complexity 1 59 0 1 1318 408 40 0 0 chr6 96115072 96115122 -53401915 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1 1318 379 300 60 79 chr6 96116459 96116802 -53400235 - MER44D DNA MER2_type -6 333 4 1 1318 459 368 114 0 chr6 96117057 96117258 -53399779 + MER58A DNA MER1_type 1 224 0 1 1318 214 185 55 18 chr6 96117300 96117355 -53399682 - L2a LINE L2 0 3426 3370 1 1318 393 22 0 0 chr6 96118145 96118191 -53398846 + (TTTTG)n Simple_repeat Simple_repeat 4 49 0 1 1318 784 288 25 57 chr6 96118627 96118907 -53398130 - B4A SINE B4 -9 283 13 1 1318 509 287 22 72 chr6 96118937 96119076 -53397961 + RSINE1 SINE B4 2 133 -32 1 1318 375 121 0 0 chr6 96119077 96119135 -53397902 + (CATA)n Simple_repeat Simple_repeat 2 59 0 1 1318 21 0 0 0 chr6 96119138 96119159 -53397878 + AT_rich Low_complexity Low_complexity 1 21 0 1 1318 196 182 0 0 chr6 96119860 96119893 -53397144 - MIRc SINE MIR -30 238 206 1 1318 224 271 143 0 chr6 96119929 96119999 -53397038 - MIR SINE MIR -138 124 45 1 1318 227 31 31 0 chr6 96120819 96120851 -53396186 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1318 1267 52 23 0 chr6 96120851 96121025 -53396012 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1318 771 290 38 38 chr6 96121061 96121405 -53395632 + RLTR15 LTR ERVK 1 344 -15 1 1318 2722 81 48 38 chr6 96121606 96122002 -53395035 + RLTR9D LTR ERVK 1 400 -3 1 1318 303 28 0 0 chr6 96122006 96122042 -53394995 + (TATG)n Simple_repeat Simple_repeat 3 38 0 1 1318 1115 158 32 0 chr6 96122750 96122940 -53394097 - ORR1C2 LTR MaLR -14 370 175 1 1318 324 167 0 0 chr6 96122940 96123012 -53394025 + GA-rich Low_complexity Low_complexity 5 76 0 1 1318 1102 198 23 14 chr6 96123015 96123274 -53393763 - ORR1C2 LTR MaLR -111 259 3 1 1318 2772 171 40 11 chr6 96123834 96123937 -53393100 - RLTR20B2 LTR ERVK 0 560 456 1 1318 480 35 0 0 chr6 96123937 96123995 -53393042 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1318 2772 171 40 11 chr6 96123995 96124435 -53392602 - RLTR20B2 LTR ERVK -105 455 1 1 1318 408 188 120 0 chr6 96124436 96124569 -53392468 - MYSERV16_I-int LTR ERVK -8 2318 2170 1 1318 26 30 0 0 chr6 96125119 96125152 -53391885 + AT_rich Low_complexity Low_complexity 1 33 0 2 1318 359 276 96 52 chr6 96125207 96125351 -53391686 - MTEb LTR MaLR 0 379 234 2 1318 207 0 0 0 chr6 96125772 96125795 -53391242 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2 1318 768 213 0 28 chr6 96125878 96126057 -53390980 + Lx6 LINE L1 6721 6894 -566 2 1318 1120 68 7 0 chr6 96126059 96126205 -53390832 + B1_Mus1 SINE Alu 1 147 -1 2 1318 585 217 0 0 chr6 96126217 96126397 -53390640 + GA-rich Low_complexity Low_complexity 1 180 0 2 1318 1995 254 80 19 chr6 96126400 96126973 -53390064 + Lx6 LINE L1 6842 7449 -11 2 1318 354 261 44 22 chr6 96126996 96127086 -53389951 - B3 SINE B2 -1 215 124 2 1318 628 362 52 11 chr6 96127048 96127319 -53389718 - B4A SINE B4 -2 290 9 2 1318 1188 81 0 0 chr6 96127338 96127486 -53389551 + B1_Mus1 SINE Alu 1 148 0 2 1318 185 83 28 0 chr6 96127486 96127522 -53389515 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 2 1318 25 0 0 0 chr6 96128007 96128032 -53389005 + AT_rich Low_complexity Low_complexity 1 25 0 2 1318 585 0 0 0 chr6 96128916 96128981 -53388056 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1318 997 123 6 6 chr6 96129264 96129435 -53387602 + (TTCC)n Simple_repeat Simple_repeat 4 174 0 2 1318 1498 157 137 2 chr6 96129966 96130389 -53386648 - Lx9 LINE L1 -564 7080 6601 2 1318 645 128 0 0 chr6 96130795 96130897 -53386140 + (TC)n Simple_repeat Simple_repeat 1 102 0 2 1318 768 335 29 37 chr6 96131066 96131337 -53385700 - B4 SINE B4 -3 289 21 2 1318 875 227 218 4 chr6 96131337 96131598 -53385439 - ORR1D2 LTR MaLR 0 370 54 2 1318 330 87 0 0 chr6 96131605 96131651 -53385386 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1318 475 78 13 13 chr6 96131710 96131788 -53385249 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 1318 181 381 71 10 chr6 96131870 96131968 -53385069 - MER5A DNA MER1_type -18 171 68 2 1318 195 346 0 97 chr6 96132416 96132560 -53384477 - L2b LINE L2 -242 3133 3004 2 1318 345 339 90 116 chr6 96132826 96133170 -53383867 - MLT1A0 LTR MaLR -28 337 3 2 1318 194 333 25 13 chr6 96134009 96134088 -53382949 + MIRm SINE MIR 84 163 -113 2 1318 223 347 13 13 chr6 96134391 96134467 -53382570 - ID4 SINE ID -1 82 7 2 1318 248 375 19 16 chr6 96134473 96134615 -53382422 - PB1 SINE Alu -2 146 3 2 1318 278 132 19 0 chr6 96135236 96135289 -53381748 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2 1318 212 317 96 28 chr6 96135641 96135796 -53381241 + MIRc SINE MIR 18 183 -79 2 1318 195 42 0 0 chr6 96138240 96138264 -53378773 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1318 378 340 10 0 chr6 96138514 96138617 -53378420 + PB1D10 SINE Alu 2 105 -12 2 1318 219 371 34 8 chr6 96139430 96139547 -53377490 + MIRm SINE MIR 30 149 -127 2 1318 260 317 32 48 chr6 96140053 96140179 -53376858 - L2 LINE L2 -991 2428 2305 2 1318 688 154 145 8 chr6 96140959 96141090 -53375947 + B1_Mur4 SINE Alu 1 149 -1 2 1318 324 0 0 0 chr6 96141422 96141458 -53375579 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1318 447 309 157 58 chr6 96141507 96141768 -53375269 + B4 SINE B4 2 288 -4 2 1318 214 312 0 0 chr6 96141768 96141839 -53375198 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 1318 322 306 78 42 chr6 96142787 96142913 -53374124 - HAL1-3A_ME LINE L1 -446 2412 2276 2 1318 554 82 12 0 chr6 96142913 96142998 -53374039 + (TG)n Simple_repeat Simple_repeat 2 87 0 2 1318 322 306 78 42 chr6 96142998 96143038 -53373999 - HAL1-3A_ME LINE L1 -583 2275 2240 2 1318 236 212 15 0 chr6 96143335 96143401 -53373636 + CT-rich Low_complexity Low_complexity 3 69 0 2 1318 1802 222 11 6 chr6 96143401 96143767 -53373270 - Lx6 LINE L1 0 7460 7093 2 1318 359 365 105 24 chr6 96143877 96144211 -53372826 + MER90 LTR ERV1 1 361 -214 2 1318 611 105 30 0 chr6 96145053 96145186 -53371851 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 2 1318 239 333 0 27 chr6 96145827 96145901 -53371136 - LTR81A LTR ERV1? -1115 235 164 2 1318 229 333 105 32 chr6 96146174 96146298 -53370739 + L2b LINE L2 3239 3371 -4 2 1318 314 232 0 0 chr6 96147218 96147287 -53369750 - HAL1-2a_MD LINE L1 -543 2481 2413 2 1318 361 358 28 17 chr6 96147289 96147468 -53369569 - MIR SINE MIR -2 260 80 2 1318 269 312 93 71 chr6 96147524 96147707 -53369330 - MIRb SINE MIR -62 206 20 2 1318 193 200 0 0 chr6 96148681 96148721 -53368316 + L2a LINE L2 3322 3361 -65 2 1318 12460 108 57 5 chr6 96148731 96151596 -53365441 - Lx LINE L1 -6 6648 3618 2 1318 275 0 0 0 chr6 96151592 96151633 -53365404 + L1_Mus1 LINE L1 6526 6566 -1 2 1318 4913 143 38 74 chr6 96151638 96152791 -53364246 + L1_Mur2 LINE L1 3262 4373 -1504 2 1318 201 225 0 0 chr6 96152791 96152831 -53364206 + L2b LINE L2 3327 3366 -9 2 1318 310 69 17 17 chr6 96154708 96154767 -53362270 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 1318 536 235 8 8 chr6 96154768 96154888 -53362149 - MTC LTR MaLR -301 120 1 2 1318 471 210 91 90 chr6 96155011 96155235 -53361802 + MTD LTR MaLR 185 399 -20 2 1318 639 0 0 0 chr6 96155423 96155494 -53361543 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1318 324 410 70 50 chr6 96155971 96156212 -53360825 + MER115 DNA Tip100 26 271 -422 2 1318 333 0 0 0 chr6 96156347 96156384 -53360653 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1318 185 238 43 87 chr6 96156952 96157021 -53360016 - MIRm SINE MIR -174 102 37 2 1318 246 62 0 0 chr6 96157022 96157054 -53359983 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 2 1318 402 395 42 5 chr6 96157605 96157821 -53359216 + MER58A DNA MER1_type 1 224 0 2 1318 1029 239 45 151 chr6 96158132 96158550 -53358487 - MTE2a LTR MaLR 0 379 6 2 1318 180 0 0 0 chr6 96159000 96159020 -53358017 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1318 198 0 0 0 chr6 96159094 96159116 -53357921 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1318 347 387 0 0 chr6 96159474 96159585 -53357452 + RSINE1 SINE B4 3 113 -52 2 1318 455 247 162 16 chr6 96159595 96159780 -53357257 - RMER15 LTR ERVL -91 484 273 2 1318 314 301 98 5 chr6 96160244 96160448 -53356589 + L1M5 LINE L1 5371 5593 -586 2 1318 262 206 14 56 chr6 96160499 96160571 -53356466 + MER63D DNA AcHobo 313 381 -680 2 1318 292 286 41 51 chr6 96160653 96160848 -53356189 + L1M5 LINE L1 5653 5845 -334 2 1318 466 307 73 8 chr6 96160882 96161237 -53355800 + Lx7 LINE L1 6924 7312 -161 2 1318 309 26 0 0 chr6 96162210 96162248 -53354789 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1318 205 292 22 22 chr6 96163350 96163441 -53353596 + (CATA)n Simple_repeat Simple_repeat 2 92 0 2 1318 225 373 0 0 chr6 96163454 96163529 -53353508 - ID4_ SINE ID -7 76 2 2 1318 227 159 97 42 chr6 96163540 96163612 -53353425 + Charlie13a DNA Charlie 462 537 -977 2 1318 542 280 55 68 chr6 96163750 96163964 -53353073 + Tigger5 DNA MER2_type 51 266 -2140 2 1318 228 212 58 43 chr6 96164290 96164359 -53352678 + B4 SINE B4 4 73 -219 2 1318 7397 71 5 3 chr6 96164359 96165739 -53351298 + L1_Mus1 LINE L1 5192 6654 0 2 1318 213 363 41 0 chr6 96166344 96166490 -53350547 + L2 LINE L2 2558 2709 -710 2 1318 793 291 81 0 chr6 96166782 96167016 -53350021 + ORR1D2 LTR MaLR 1 253 -117 2 1318 306 0 0 0 chr6 96167027 96167061 -53349976 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1318 850 298 69 36 chr6 96167192 96167467 -53349570 - B4 SINE B4 0 292 9 2 1318 683 266 127 9 chr6 96168001 96168331 -53348706 + L1MA5 LINE L1 5926 6294 -6 2 1318 613 241 104 157 chr6 96168600 96168713 -53348324 - Lx9 LINE L1 -217 7427 7321 2 1318 895 255 0 36 chr6 96168713 96168937 -53348100 - B3 SINE B2 0 216 1 2 1318 613 241 104 157 chr6 96168937 96169217 -53347820 - Lx9 LINE L1 -324 7320 7055 2 1318 531 357 0 27 chr6 96169441 96169660 -53347377 + MER58A DNA MER1_type 10 222 -2 2 1318 1391 275 75 67 chr6 96169702 96170955 -53346082 - L1MB3 LINE L1 -238 5945 4690 2 1318 25 31 0 0 chr6 96171567 96171599 -53345438 + AT_rich Low_complexity Low_complexity 1 32 0 2 1318 606 82 0 0 chr6 96171599 96171684 -53345353 + (TATG)n Simple_repeat Simple_repeat 1 85 0 2 1318 513 302 56 92 chr6 96171711 96172014 -53345023 - B4A SINE B4 0 292 1 2 1318 521 92 10 30 chr6 96173479 96173580 -53343457 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1318 497 168 39 16 chr6 96173624 96173751 -53343286 - L1MA4 LINE L1 -411 5889 5760 2 1318 267 152 0 0 chr6 96174426 96174472 -53342565 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 2 1318 21 0 0 0 chr6 96174730 96174751 -53342286 + AT_rich Low_complexity Low_complexity 1 21 0 2 1318 24 0 0 0 chr6 96175038 96175062 -53341975 + AT_rich Low_complexity Low_complexity 1 24 0 2 1318 401 0 0 20 chr6 96175362 96175412 -53341625 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1318 287 368 35 32 chr6 96175497 96175717 -53341320 + MIR SINE MIR 10 224 -38 2 1318 398 239 10 71 chr6 96175953 96176052 -53340985 + PB1D10 SINE Alu 6 98 -19 2 1318 184 330 11 54 chr6 96176584 96176677 -53340360 + L2b LINE L2 3287 3375 0 2 1318 3514 152 1 35 chr6 96177742 96178423 -53338614 - L1_Mur2 LINE L1 -1004 4873 4216 2 1318 1685 287 50 26 chr6 96178471 96179167 -53337870 + Lx5 LINE L1 6468 7033 -17 2 1318 204 40 0 0 chr6 96179177 96179202 -53337835 + (TAA)n Simple_repeat Simple_repeat 3 27 0 2 1318 245 385 5 32 chr6 96179382 96179567 -53337470 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 2 1318 357 343 58 12 chr6 96179576 96179747 -53337290 - HAL1-2a_MD LINE L1 -501 2523 2345 3 1318 208 328 16 32 chr6 96179755 96179878 -53337159 + (ATGGTG)n Simple_repeat Simple_repeat 2 122 0 3 1318 242 346 0 25 chr6 96180042 96180122 -53336915 - MIR SINE MIR -171 91 14 3 1318 300 360 12 0 chr6 96181206 96181292 -53335745 + PB1D10 SINE Alu 1 87 -30 3 1318 2235 227 14 0 chr6 96183101 96183537 -53333500 + Lx6 LINE L1 7014 7455 -5 3 1318 396 0 0 0 chr6 96183739 96183783 -53333254 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1318 229 325 76 42 chr6 96184465 96184584 -53332453 + B1F SINE Alu 7 129 -20 3 1318 723 285 51 28 chr6 96184614 96184867 -53332170 + MER2 DNA MER2_type 87 345 0 3 1318 486 0 0 0 chr6 96185361 96185415 -53331622 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1318 495 310 44 25 chr6 96185429 96185588 -53331449 - RSINE1 SINE B4 -1 164 3 3 1318 857 328 34 3 chr6 96185863 96186197 -53330840 - ORR1D2 LTR MaLR 0 359 3 3 1318 217 304 43 21 chr6 96186464 96186558 -53330479 + MIR SINE MIR 163 258 -4 3 1318 333 329 93 27 chr6 96186695 96186845 -53330192 + RSINE1 SINE B4 2 161 -4 3 1318 363 96 0 0 chr6 96186847 96186899 -53330138 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1318 444 19 0 0 chr6 96187445 96187498 -53329539 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1318 393 39 0 0 chr6 96188967 96189018 -53328019 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1318 834 346 15 26 chr6 96189051 96189321 -53327716 - B4 SINE B4 0 292 26 3 1318 2781 178 20 14 chr6 96189984 96190486 -53326551 + RLTR16 LTR ERVK 1 505 0 3 1318 499 270 8 53 chr6 96192025 96192158 -53324879 + RSINE1 SINE B4 3 129 -36 3 1318 292 245 96 102 chr6 96192158 96192202 -53324835 + B2_Mm2 SINE B2 2 177 -18 3 1318 794 117 39 8 chr6 96193292 96193421 -53323616 + RLTR16 LTR ERVK 1 133 -372 3 1318 396 314 118 52 chr6 96193488 96193837 -53323200 + MLT1K LTR MaLR 210 581 -14 3 1318 630 37 0 0 chr6 96193983 96194064 -53322973 + (GA)n Simple_repeat Simple_repeat 1 81 0 3 1318 21 0 0 0 chr6 96194126 96194147 -53322890 + AT_rich Low_complexity Low_complexity 1 21 0 3 1318 252 309 141 77 chr6 96194725 96195037 -53322000 - Helitron3Na_Mam RC Helitron -85 401 70 3 1318 1061 206 29 0 chr6 96195237 96195446 -53321591 + B3 SINE B2 2 216 0 3 1318 234 322 123 70 chr6 96195589 96195776 -53321261 - MER20 DNA MER1_type -22 197 1 3 1318 376 358 51 100 chr6 96198043 96198472 -53318565 - MER47B DNA MER2_type -9 409 2 3 1318 223 342 12 58 chr6 96199925 96200096 -53316941 - MIR SINE MIR -2 260 98 3 1318 24 32 0 0 chr6 96200739 96200770 -53316267 + AT_rich Low_complexity Low_complexity 1 31 0 3 1318 1219 281 144 20 chr6 96202910 96203459 -53313578 - Lx8 LINE L1 -1 7472 6856 3 1318 243 88 0 0 chr6 96203883 96203917 -53313120 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1318 229 312 67 34 chr6 96204095 96204244 -53312793 - MIRb SINE MIR -59 209 56 3 1318 227 272 103 16 chr6 96204444 96204575 -53312462 - MIR SINE MIR -113 149 3 3 1318 1133 272 98 41 chr6 96204718 96205086 -53311951 - Charlie13b DNA Charlie -103 409 21 3 1318 213 326 70 36 chr6 96205858 96206003 -53311034 - MIRc SINE MIR -105 163 10 3 1318 398 20 0 19 chr6 96206775 96206827 -53310210 + (TTA)n Simple_repeat Simple_repeat 1 51 0 3 1319 800 148 236 0 chr6 96207727 96207909 -53309128 - URR1B DNA MER1_type 0 225 1 3 1319 378 288 108 32 chr6 96208213 96208371 -53308666 - MER58A DNA MER1_type -47 177 8 3 1319 288 102 0 0 chr6 96208573 96208622 -53308415 + (T)n Simple_repeat Simple_repeat 1 49 0 3 1319 342 238 148 9 chr6 96209642 96209788 -53307249 + MER58A DNA MER1_type 1 163 -61 3 1319 438 36 0 0 chr6 96211978 96212034 -53305003 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1319 459 311 61 0 chr6 96212290 96212438 -53304599 + RSINE1 SINE B4 4 160 -5 3 1319 414 100 0 0 chr6 96213191 96213251 -53303786 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1319 217 386 34 0 chr6 96213310 96213398 -53303639 + L2b LINE L2 3271 3361 -14 3 1319 333 251 134 0 chr6 96213862 96213948 -53303089 - B1F SINE Alu -16 101 6 3 1319 303 326 76 0 chr6 96213875 96213967 -53303070 - ID_B1 SINE B4 -58 166 68 3 1319 724 261 58 5 chr6 96214750 96214939 -53302098 - MTEa LTR MaLR 0 379 181 3 1319 288 316 82 0 chr6 96214969 96215067 -53301970 - MTEa LTR MaLR -273 106 1 3 1319 187 255 62 21 chr6 96215280 96215328 -53301709 - MER5A DNA MER1_type -26 163 114 3 1319 475 340 58 76 chr6 96215519 96215742 -53301295 + B4A SINE B4 4 222 -70 3 1319 210 37 0 0 chr6 96216157 96216184 -53300853 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 3 1319 1115 220 182 7 chr6 96216268 96216478 -53300559 + ORR1D1 LTR MaLR 7 243 -131 3 1319 192 40 0 0 chr6 96216478 96216503 -53300534 + (CCTG)n Simple_repeat Simple_repeat 4 28 0 3 1319 1115 220 182 7 chr6 96216503 96216594 -53300443 + ORR1D1 LTR MaLR 244 361 -13 3 1319 663 287 51 97 chr6 96218645 96219173 -53297864 + L1M4 LINE L1 452 955 -5949 3 1319 337 283 81 97 chr6 96219192 96219689 -53297348 + L1M4 LINE L1 1354 1842 -5062 3 1319 257 116 0 0 chr6 96219693 96219736 -53297301 - L1Md_F LINE L1 -6256 263 221 3 1319 1563 77 13 18 chr6 96219736 96219962 -53297075 + L1_Mus1 LINE L1 6343 6567 0 3 1319 22 35 0 0 chr6 96219962 96219991 -53297046 + AT_rich Low_complexity Low_complexity 1 29 0 3 1319 467 324 50 65 chr6 96219998 96220259 -53296778 + L1M4 LINE L1 1817 2073 -4831 3 1319 271 290 1 0 chr6 96220293 96220387 -53296650 + L1M4 LINE L1 2145 2227 -5107 3 1319 342 273 241 44 chr6 96220400 96220741 -53296296 + MLT1A1 LTR MaLR 1 408 0 3 1319 312 351 103 7 chr6 96220741 96220896 -53296141 + L1M4 LINE L1 2248 2417 -4591 3 1319 447 310 137 28 chr6 96221001 96221389 -53295648 + L1M4 LINE L1 2655 3084 -3924 3 1319 23 0 0 0 chr6 96221389 96221412 -53295625 + AT_rich Low_complexity Low_complexity 1 23 0 3 1319 476 295 24 49 chr6 96221457 96221621 -53295416 - RSINE1 SINE B4 -2 163 4 3 1319 408 304 123 37 chr6 96221779 96222784 -53294253 + L1M4 LINE L1 3241 4332 -2674 3 1319 24 77 0 0 chr6 96222894 96222946 -53294091 + AT_rich Low_complexity Low_complexity 1 52 0 3 1319 748 210 133 0 chr6 96223010 96223191 -53293846 + B3 SINE B2 1 205 -11 3 1319 375 275 133 89 chr6 96223252 96223523 -53293514 + L1MD LINE L1 3642 3924 -2222 3 1319 1709 235 46 15 chr6 96223821 96224214 -53292823 + MTD LTR MaLR 1 405 -14 3 1319 201 211 0 0 chr6 96224450 96224502 -53292535 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1319 733 264 0 52 chr6 96224504 96224676 -53292361 - RSINE1 SINE B4 0 165 3 3 1319 471 35 0 0 chr6 96225072 96225129 -53291908 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1319 546 242 91 93 chr6 96225839 96226130 -53290907 - MLT1A1 LTR MaLR 0 408 76 3 1319 675 0 0 0 chr6 96226588 96226663 -53290374 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 3 1319 377 297 8 91 chr6 96227894 96228008 -53289029 + Lx8 LINE L1 7241 7343 -130 3 1319 186 43 0 0 chr6 96228008 96228031 -53289006 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 3 1319 377 297 8 91 chr6 96228031 96228168 -53288869 + Lx8 LINE L1 7344 7471 -2 3 1319 1906 297 57 9 chr6 96228639 96229019 -53288018 - Lx8 LINE L1 -356 7117 6720 3 1319 492 48 0 0 chr6 96229019 96229082 -53287955 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1319 1906 297 57 9 chr6 96229082 96229401 -53287636 - Lx8 LINE L1 -754 6719 6385 3 1319 217 326 116 90 chr6 96229921 96230304 -53286733 - L2a LINE L2 -38 3388 2974 3 1319 390 335 77 96 chr6 96230931 96231255 -53285782 + ORR1E LTR MaLR 3 320 -39 3 1319 2036 187 62 22 chr6 96231557 96231845 -53285192 - RMER4A LTR ERVK 0 466 162 3 1319 207 0 0 0 chr6 96231845 96231868 -53285169 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1319 2036 187 62 22 chr6 96231868 96232027 -53285010 - RMER4A LTR ERVK -305 161 1 3 1319 234 0 0 0 chr6 96232386 96232412 -53284625 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1319 749 323 166 43 chr6 96233189 96233678 -53283359 + MLT1F2 LTR MaLR 4 552 -8 3 1319 319 246 24 15 chr6 96234982 96235078 -53281959 - B1F1 SINE Alu -17 100 3 3 1319 2139 221 25 58 chr6 96237011 96237559 -53279478 - RMER5 LTR ERV1 0 534 5 3 1319 1245 97 9 63 chr6 96237988 96238209 -53278828 - Lx LINE L1 -6 6648 6440 3 1319 207 0 0 0 chr6 96240144 96240167 -53276870 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1319 23 0 0 0 chr6 96240335 96240358 -53276679 + AT_rich Low_complexity Low_complexity 1 23 0 3 1319 194 57 57 0 chr6 96240388 96240423 -53276614 + (GTTTG)n Simple_repeat Simple_repeat 4 40 0 3 1319 1045 84 42 0 chr6 96240423 96240565 -53276472 - B1_Mus1 SINE Alu 0 148 1 3 1319 36251 30 0 0 chr6 96240658 96247102 -53269935 - L1Md_T LINE L1 0 6585 45 3 1319 3260 38 8 0 chr6 96247301 96247692 -53269345 - MTA_Mm LTR MaLR -2 394 1 3 1319 907 276 83 23 chr6 96247729 96248030 -53269007 - MTD LTR MaLR 0 419 101 3 1319 286 279 61 76 chr6 96248151 96248392 -53268645 - L1M5 LINE L1 -719 5521 5285 3 1319 642 234 31 25 chr6 96248414 96248576 -53268461 - RSINE1 SINE B4 0 165 3 3 1319 575 276 53 20 chr6 96249091 96249206 -53267831 - Lx9 LINE L1 -48 7596 7474 3 1319 345 24 0 0 chr6 96249206 96249248 -53267789 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1319 575 276 53 20 chr6 96249248 96249431 -53267606 - Lx9 LINE L1 -171 7473 7288 3 1319 282 29 0 0 chr6 96250287 96250322 -53266715 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1319 598 274 39 113 chr6 96250342 96250572 -53266465 + B4 SINE B4 80 292 0 3 1319 227 356 33 40 chr6 96250801 96250953 -53266084 + MIRb SINE MIR 87 237 -31 3 1319 2448 96 85 3 chr6 96251783 96252159 -53264878 - Lx LINE L1 -1 6653 6247 3 1319 1228 222 57 54 chr6 96252343 96252604 -53264433 + MTD LTR MaLR 105 372 -47 3 1319 2646 41 0 0 chr6 96252604 96252922 -53264115 + L1Md_T LINE L1 6265 6582 0 3 1319 1228 222 57 54 chr6 96252922 96252974 -53264063 + MTD LTR MaLR 373 419 0 3 1319 438 20 0 0 chr6 96255055 96255106 -53261931 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1319 1202 182 74 4 chr6 96255390 96255633 -53261404 + RMER4B LTR ERVK 21 280 -305 4 1319 415 151 40 14 chr6 96255668 96255742 -53261295 + RMER4B LTR ERVK 460 535 -50 4 1319 487 301 55 55 chr6 96256254 96256437 -53260600 + MER20 DNA MER1_type 37 219 0 4 1319 317 359 68 51 chr6 96257550 96257726 -53259311 - MLT1K LTR MaLR -310 285 107 4 1319 250 263 93 83 chr6 96258705 96258813 -53258224 + L2a LINE L2 3300 3408 -18 4 1319 924 283 35 35 chr6 96258863 96259291 -53257746 - L1MC1 LINE L1 -386 6122 5695 4 1319 528 16 0 0 chr6 96259292 96259353 -53257684 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 1319 27 29 0 0 chr6 96259360 96259394 -53257643 + AT_rich Low_complexity Low_complexity 1 34 0 4 1319 249 245 188 21 chr6 96259557 96259653 -53257384 - Lx9 LINE L1 -354 7290 7179 4 1319 904 288 65 52 chr6 96259679 96260520 -53256517 - L1MC1 LINE L1 -827 5681 4822 4 1319 207 69 0 0 chr6 96260524 96260553 -53256484 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 4 1319 535 216 81 0 chr6 96260555 96260666 -53256371 - B1_Mur2 SINE Alu -28 121 2 4 1319 673 298 117 21 chr6 96260681 96261246 -53255791 - L1MC1 LINE L1 -1528 4793 4175 4 1319 25925 61 136 0 chr6 96261302 96266694 -53250343 - L1Md_F3 LINE L1 -14 6570 431 4 1319 833 278 118 80 chr6 96266699 96267686 -53249351 - L1MC1 LINE L1 -2214 4107 3084 4 1319 859 301 69 23 chr6 96267739 96268215 -53248822 - L1MC1 LINE L1 -3380 2941 2444 4 1319 444 285 98 81 chr6 96268215 96268412 -53248625 - L1MA6 LINE L1 -4 6296 6089 4 1319 871 303 77 8 chr6 96268412 96268765 -53248272 + MTEa LTR MaLR 3 379 0 4 1319 444 274 88 61 chr6 96268765 96269114 -53247923 - L1MA6 LINE L1 -212 6088 5670 4 1319 561 226 43 57 chr6 96269121 96269262 -53247775 - B1_Mur1 SINE Alu -1 148 10 4 1319 307 264 8 120 chr6 96269163 96269288 -53247749 - MT2B LTR ERVL -336 265 155 4 1319 183 100 0 0 chr6 96269342 96269372 -53247665 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1319 323 271 171 0 chr6 96269375 96269504 -53247533 - RMER15 LTR ERVL 0 575 425 4 1319 354 286 180 0 chr6 96269509 96269715 -53247322 - L1MC1 LINE L1 -5928 580 338 4 1319 294 29 0 0 chr6 96270029 96270064 -53246973 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 4 1319 288 257 26 42 chr6 96270097 96270246 -53246791 - MIR SINE MIR -79 183 48 4 1319 279 0 0 0 chr6 96270856 96270887 -53246150 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1319 357 24 0 0 chr6 96270887 96270928 -53246109 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1319 30 69 0 0 chr6 96271456 96271514 -53245523 + AT_rich Low_complexity Low_complexity 1 58 0 4 1319 1306 241 23 41 chr6 96271556 96271901 -53245136 + Lx6 LINE L1 7053 7393 -67 4 1319 2766 58 3 0 chr6 96271901 96272246 -53244791 + ORR1A1 LTR MaLR 1 346 0 4 1319 1306 241 23 41 chr6 96272246 96272289 -53244748 + Lx6 LINE L1 7394 7434 -26 4 1319 343 373 71 38 chr6 96272875 96273059 -53243978 - MLT1K LTR MaLR -306 289 100 4 1319 183 263 109 59 chr6 96273621 96273722 -53243315 - MIRb SINE MIR -70 198 93 4 1319 589 301 54 14 chr6 96274341 96274489 -53242548 - RSINE1 SINE B4 -5 160 7 4 1319 1031 278 82 30 chr6 96274956 96275323 -53241714 + MLT1E1A LTR MaLR 295 680 0 4 1319 419 305 75 51 chr6 96276814 96277039 -53239998 - MLT1F LTR MaLR -235 344 60 4 1319 414 0 0 0 chr6 96277158 96277204 -53239833 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1319 234 0 0 0 chr6 96277746 96277772 -53239265 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1319 315 0 0 0 chr6 96278842 96278877 -53238160 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1319 197 271 116 45 chr6 96279746 96279858 -53237179 + MIR SINE MIR 36 155 -107 4 1319 378 0 0 0 chr6 96280494 96280536 -53236501 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1319 1390 212 126 19 chr6 96280638 96281003 -53236034 + MTD LTR MaLR 16 419 0 4 1319 801 323 69 9 chr6 96281017 96281351 -53235686 - MT2A LTR ERVL -105 428 75 4 1319 335 286 124 9 chr6 96281283 96281396 -53235641 - MTE2a LTR MaLR -233 146 21 4 1319 1068 172 41 18 chr6 96281452 96281671 -53235366 + URR1A DNA MER1_type 1 224 -2 4 1319 323 280 99 53 chr6 96281761 96281912 -53235125 + L1MC3 LINE L1 5062 5219 -927 4 1319 212 171 0 0 chr6 96282082 96282117 -53234920 + (CAAT)n Simple_repeat Simple_repeat 1 35 0 4 1319 901 262 50 88 chr6 96282117 96282413 -53234624 + L1MC3 LINE L1 5557 5830 -1955 4 1319 2236 174 13 10 chr6 96282413 96282803 -53234234 - ORR1B1 LTR MaLR 0 394 4 4 1319 901 262 50 88 chr6 96282803 96283004 -53234033 + L1MC3 LINE L1 5831 6035 -1750 4 1319 1403 222 100 67 chr6 96283243 96283633 -53233404 + MTD LTR MaLR 17 419 0 4 1319 302 299 0 0 chr6 96283665 96283762 -53233275 + L1MC3 LINE L1 6287 6383 -1402 4 1319 482 288 48 55 chr6 96283796 96284068 -53232969 + L1MC3 LINE L1 6692 6961 -824 4 1319 676 295 76 8 chr6 96284069 96284332 -53232705 + B4A SINE B4 2 282 -10 4 1319 378 321 160 4 chr6 96284345 96284589 -53232448 + L1MC3 LINE L1 7227 7508 -277 4 1319 585 0 0 0 chr6 96284657 96284722 -53232315 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1319 560 71 40 0 chr6 96284726 96284825 -53232212 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 4 1319 258 116 0 0 chr6 96284825 96284867 -53232170 + (CATA)n Simple_repeat Simple_repeat 4 46 0 4 1319 249 219 183 35 chr6 96285496 96285638 -53231399 + L1MC3 LINE L1 7539 7701 -84 4 1319 258 305 0 12 chr6 96286002 96286085 -53230952 - ID4_ SINE ID 0 83 2 4 1319 379 348 18 0 chr6 96286385 96286497 -53230540 + PB1D9 SINE Alu 1 114 -6 4 1319 806 318 68 29 chr6 96286870 96287178 -53229859 - MTE2b LTR MaLR -55 324 5 4 1319 213 39 0 0 chr6 96287904 96287930 -53229107 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1319 648 0 0 0 chr6 96287931 96288003 -53229034 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1319 1250 53 0 17 chr6 96288128 96288300 -53228737 + (TCTCC)n Simple_repeat Simple_repeat 2 170 0 4 1319 345 197 0 0 chr6 96288303 96288379 -53228658 + C-rich Low_complexity Low_complexity 5 80 0 4 1319 315 0 0 0 chr6 96291244 96291279 -53225758 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1319 465 229 7 51 chr6 96291667 96291805 -53225232 - L1MA5 LINE L1 -460 5840 5709 4 1319 416 281 23 40 chr6 96291805 96291979 -53225058 - MARNA DNA Mariner -170 416 246 4 1319 1144 58 0 0 chr6 96292809 96292947 -53224090 - B1_Mus1 SINE Alu -9 139 2 4 1319 651 278 35 30 chr6 96294672 96294754 -53222283 + ID SINE ID 6 88 -136 4 1319 360 265 121 0 chr6 96294754 96294886 -53222151 + B1F SINE Alu 1 148 -1 4 1319 234 91 0 0 chr6 96294886 96294919 -53222118 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 1319 715 270 73 41 chr6 96295426 96295496 -53221541 - B3A SINE B2 0 198 130 4 1319 411 21 0 0 chr6 96295496 96295544 -53221493 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1319 715 259 96 0 chr6 96295544 96295656 -53221381 - B3A SINE B2 -56 142 18 4 1319 212 247 0 22 chr6 96295698 96295789 -53221248 + CT-rich Low_complexity Low_complexity 3 91 0 4 1319 525 16 0 0 chr6 96295813 96295875 -53221162 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1319 515 290 27 27 chr6 96296345 96296533 -53220504 - B3A SINE B2 -9 189 2 4 1319 258 315 46 59 chr6 96296950 96297102 -53219935 + MIRb SINE MIR 119 268 0 4 1319 249 192 0 0 chr6 96297336 96297388 -53219649 + (TTG)n Simple_repeat Simple_repeat 2 53 0 4 1319 486 265 71 27 chr6 96298807 96299032 -53218005 - L1MB8 LINE L1 0 6178 5944 4 1319 207 0 0 0 chr6 96300267 96300290 -53216747 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 4 1319 765 90 0 0 chr6 96300376 96300487 -53216550 + (CA)n Simple_repeat Simple_repeat 1 111 0 4 1319 342 284 40 101 chr6 96300860 96300938 -53216099 + MER2 DNA MER2_type 108 182 -163 4 1319 433 84 14 14 chr6 96300938 96301010 -53216027 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 1319 342 284 40 101 chr6 96301010 96301080 -53215957 + MER2 DNA MER2_type 183 247 -98 4 1319 316 390 108 17 chr6 96301437 96301724 -53215313 + MLT1K LTR MaLR 228 540 -55 4 1319 625 326 47 13 chr6 96302270 96302503 -53214534 - MLT1A0 LTR MaLR -112 253 13 4 1319 387 318 89 18 chr6 96302812 96303036 -53214001 - LTR41 LTR ERVL -8 760 521 4 1319 532 129 0 19 chr6 96305111 96305214 -53211823 + (TCTCCC)n Simple_repeat Simple_repeat 6 106 0 4 1319 22 35 0 0 chr6 96305798 96305827 -53211210 + AT_rich Low_complexity Low_complexity 1 29 0 4 1319 603 278 45 36 chr6 96306174 96306186 -53210851 - Lx9 LINE L1 -1060 6584 6571 4 1319 4136 133 91 9 chr6 96306186 96306846 -53210191 - RMER19A LTR ERVK 0 737 19 4 1319 198 0 0 0 chr6 96306846 96306868 -53210169 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1319 4136 133 91 9 chr6 96306868 96306888 -53210149 - RMER19A LTR ERVK -719 18 1 4 1319 603 278 45 36 chr6 96306888 96307099 -53209938 - Lx9 LINE L1 -1074 6570 6360 4 1319 609 14 0 0 chr6 96307139 96307209 -53209828 + (CAAAA)n Simple_repeat Simple_repeat 2 71 0 4 1319 232 319 75 19 chr6 96308466 96308626 -53208411 - L1MD2 LINE L1 -199 6160 5992 4 1319 648 294 129 13 chr6 96308783 96309451 -53207586 - L1MD2 LINE L1 -690 5754 5006 4 1319 752 307 7 33 chr6 96309515 96309815 -53207222 - B4A SINE B4 0 292 1 4 1319 311 213 21 31 chr6 96309830 96309927 -53207110 - L1MC LINE L1 -1169 4977 4882 4 1319 502 362 56 47 chr6 96311360 96311702 -53205335 + ORR1E LTR MaLR 14 358 -1 4 1319 234 274 27 27 chr6 96312374 96312449 -53204588 - B3A SINE B2 -119 79 5 4 1319 2970 78 50 64 chr6 96313847 96314329 -53202708 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1319 479 333 63 67 chr6 96314529 96314828 -53202209 + ORR1E LTR MaLR 52 349 -10 4 1319 276 53 0 0 chr6 96315635 96315673 -53201364 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1319 526 280 23 36 chr6 96315833 96315852 -53201185 - B3 SINE B2 0 216 201 4 1319 195 42 0 0 chr6 96315852 96315876 -53201161 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 1319 526 280 23 36 chr6 96315876 96316075 -53200962 - B3 SINE B2 -16 200 1 4 1319 243 324 36 27 chr6 96317486 96317597 -53199440 - MIRb SINE MIR -122 146 35 4 1319 221 240 220 0 chr6 96318040 96318090 -53198947 - ID4_ SINE ID -9 74 14 4 1319 284 333 94 56 chr6 96318159 96318372 -53198665 + MIR SINE MIR 40 260 -2 4 1319 415 0 18 18 chr6 96319125 96319181 -53197856 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1319 719 189 0 11 chr6 96319241 96319423 -53197614 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1319 216 0 0 0 chr6 96320091 96320115 -53196922 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 1319 2788 127 4 43 chr6 96320310 96320773 -53196264 + RLTR11B LTR ERVK 1 445 -8 4 1319 2091 107 259 2 chr6 96320774 96321194 -53195843 - RLTR47_MM LTR ERV1 0 532 5 4 1319 462 125 0 0 chr6 96325385 96325465 -53191572 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1319 224 160 20 20 chr6 96325466 96325517 -53191520 + GA-rich Low_complexity Low_complexity 2 52 0 4 1319 319 263 28 0 chr6 96325602 96325708 -53191329 + ID4 SINE ID 2 110 -42 5 1319 464 280 31 88 chr6 96326170 96326362 -53190675 + B3A SINE B2 2 182 -16 5 1319 246 62 0 0 chr6 96327773 96327805 -53189232 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1319 249 360 79 10 chr6 96327840 96327941 -53189096 + PB1 SINE Alu 18 125 -2 5 1319 888 324 0 0 chr6 96328570 96328780 -53188257 - B3 SINE B2 -5 211 2 5 1319 477 336 0 0 chr6 96328881 96329003 -53188034 - RSINE1 SINE B4 -40 125 4 5 1319 215 185 18 53 chr6 96331363 96331420 -53185617 + CT-rich Low_complexity Low_complexity 5 59 0 5 1319 258 344 31 31 chr6 96331503 96331662 -53185375 - MER5A1 DNA MER1_type -1 165 7 5 1319 489 34 0 0 chr6 96332964 96333023 -53184014 + (CTG)n Simple_repeat Simple_repeat 3 61 0 5 1319 190 281 56 89 chr6 96333225 96333315 -53183722 - L4 LINE RTE -1106 923 837 5 1319 384 40 0 0 chr6 96333436 96333486 -53183551 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1319 315 0 0 0 chr6 96333488 96333523 -53183514 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1319 295 280 33 35 chr6 96334503 96334603 -53182434 - PB1D7 SINE Alu 0 120 21 5 1319 213 307 128 39 chr6 96335158 96335314 -53181723 - L2c LINE L2 -260 3127 2958 5 1319 854 41 22 51 chr6 96335790 96335968 -53181069 + (GAGAA)n Simple_repeat Simple_repeat 2 174 0 5 1319 416 150 12 0 chr6 96335983 96336063 -53180974 + GA-rich Low_complexity Low_complexity 2 82 0 5 1319 257 270 0 17 chr6 96336729 96336846 -53180191 + (TATATG)n Simple_repeat Simple_repeat 6 120 0 5 1319 387 0 0 0 chr6 96337238 96337281 -53179756 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1319 242 111 22 0 chr6 96337295 96337312 -53179725 + (GA)n Simple_repeat Simple_repeat 2 18 0 5 1319 1475 11 11 0 chr6 96337312 96337488 -53179549 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 5 1319 242 111 22 0 chr6 96337488 96337515 -53179522 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 164 229 373 93 21 chr6 96337814 96338132 -53178905 - L2a LINE L2 -80 3307 2966 5 1320 21 0 0 0 chr6 96338895 96338916 -53178121 + AT_rich Low_complexity Low_complexity 1 21 0 5 1320 722 169 21 13 chr6 96339378 96339620 -53177417 + (TA)n Simple_repeat Simple_repeat 1 244 0 5 1320 717 73 0 0 chr6 96339671 96339767 -53177270 + (CATATA)n Simple_repeat Simple_repeat 6 101 0 5 1320 1493 218 99 11 chr6 96340147 96340509 -53176528 + ORR1B1 LTR MaLR 1 394 0 5 1320 716 270 76 5 chr6 96341105 96341328 -53175709 + MER44A DNA MER2_type 100 338 -1 5 1320 435 301 64 35 chr6 96341679 96341851 -53175186 - MER5A DNA MER1_type 0 189 13 5 1320 180 367 12 37 chr6 96342369 96342451 -53174586 - L2c LINE L2 -42 3345 3266 5 1320 720 291 21 5 chr6 96344003 96344193 -53172844 + MTD LTR MaLR 18 210 -209 5 1320 459 256 122 8 chr6 96344364 96344554 -53172483 + MTD LTR MaLR 185 419 0 5 1320 200 143 0 23 chr6 96345281 96345324 -53171713 + GA-rich Low_complexity Low_complexity 2 43 0 5 1320 327 291 81 95 chr6 96345331 96345479 -53171558 - RSINE1 SINE B4 -17 148 3 5 1320 187 371 178 12 chr6 96345536 96345705 -53171332 - MIR SINE MIR -9 253 57 5 1320 192 334 106 51 chr6 96346092 96346251 -53170786 - MIR SINE MIR -57 205 31 5 1320 233 250 16 16 chr6 96346264 96346325 -53170712 + (CATA)n Simple_repeat Simple_repeat 2 62 0 5 1320 21 0 0 0 chr6 96347899 96347920 -53169117 + AT_rich Low_complexity Low_complexity 1 21 0 5 1320 201 108 0 0 chr6 96348024 96348061 -53168976 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1320 304 276 57 0 chr6 96348063 96348168 -53168869 - Lx9 LINE L1 -142 7502 7392 5 1320 468 51 0 0 chr6 96348658 96348717 -53168320 + (TATG)n Simple_repeat Simple_repeat 2 60 0 5 1320 780 245 48 10 chr6 96350498 96350704 -53166333 - B3 SINE B2 -2 214 1 5 1320 219 177 70 31 chr6 96351535 96351713 -53165324 + (TA)n Simple_repeat Simple_repeat 1 184 0 5 1320 251 250 9 35 chr6 96351757 96351873 -53165164 - L1M5 LINE L1 -950 5196 5084 5 1320 281 349 75 75 chr6 96352217 96352539 -53164498 - L2 LINE L2 -661 2758 2437 5 1320 292 280 29 20 chr6 96354082 96354184 -53162853 - MIR SINE MIR -12 250 148 5 1320 3078 32 5 3 chr6 96354724 96355095 -53161942 + L1Md_F3 LINE L1 6213 6584 0 5 1320 1644 238 66 8 chr6 96355412 96355717 -53161320 - MTD LTR MaLR 0 419 110 5 1320 1235 26 0 6 chr6 96355717 96355873 -53161164 - L1Md_F2 LINE L1 -2 6580 6426 5 1320 1644 238 66 8 chr6 96355873 96355961 -53161076 - MTD LTR MaLR -310 109 5 5 1320 396 0 0 0 chr6 96356576 96356620 -53160417 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 1320 261 0 0 0 chr6 96356620 96356648 -53160389 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1320 247 284 132 24 chr6 96357612 96357825 -53159212 - Charlie5 DNA MER1_type -34 2590 2355 5 1320 3760 28 0 0 chr6 96357870 96358306 -53158731 - L1Md_T LINE L1 -1 6581 6146 5 1320 291 286 0 0 chr6 96358509 96358593 -53158444 + MIRb SINE MIR 50 133 -135 5 1320 216 200 0 0 chr6 96358995 96359035 -53158002 + (TATG)n Simple_repeat Simple_repeat 2 41 0 5 1320 873 301 22 4 chr6 96359358 96359586 -53157451 + B4A SINE B4 6 237 -55 5 1320 1739 222 38 38 chr6 96359586 96359980 -53157057 - MTD LTR MaLR 0 419 26 5 1320 618 330 66 25 chr6 96360151 96360437 -53156600 - Helitron3Na_Mam RC Helitron -160 326 29 5 1320 1734 206 24 12 chr6 96360804 96361142 -53155895 + ORR1D1 LTR MaLR 32 373 -1 5 1320 281 309 0 0 chr6 96361507 96361575 -53155462 + ID4_ SINE ID 2 69 -14 5 1320 180 125 0 0 chr6 96361612 96361644 -53155393 + (CAGAGA)n Simple_repeat Simple_repeat 2 33 0 5 1320 21 0 0 0 chr6 96362181 96362202 -53154835 + AT_rich Low_complexity Low_complexity 1 21 0 5 1320 450 266 0 72 chr6 96362935 96363073 -53153964 - ID_B1 SINE B4 -9 215 88 5 1320 201 39 0 0 chr6 96363510 96363536 -53153501 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1320 267 79 0 0 chr6 96363580 96363618 -53153419 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1320 658 305 61 23 chr6 96363618 96363870 -53153167 - B4 SINE B4 -22 270 5 5 1320 189 94 0 0 chr6 96365003 96365035 -53152002 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1320 226 291 50 12 chr6 96365244 96365324 -53151713 + MIRc SINE MIR 75 157 -111 5 1320 222 397 47 16 chr6 96365326 96365454 -53151583 + MIR SINE MIR 15 146 -116 5 1320 352 246 97 131 chr6 96365659 96365721 -53151316 - MLT1A1 LTR MaLR -1 407 341 5 1320 575 275 106 6 chr6 96365721 96365900 -53151137 + B3A SINE B2 2 198 0 5 1320 352 246 97 131 chr6 96365900 96365982 -53151055 - MLT1A1 LTR MaLR -68 340 268 5 1320 270 0 0 0 chr6 96367008 96367038 -53149999 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1320 186 43 0 0 chr6 96371063 96371086 -53145951 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 5 1320 891 87 0 0 chr6 96371465 96371591 -53145446 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 5 1320 183 93 22 44 chr6 96371591 96371628 -53145409 + T-rich Low_complexity Low_complexity 2 38 0 5 1320 925 127 20 27 chr6 96371628 96371774 -53145263 - B1_Mur4 SINE Alu -5 145 1 5 1320 603 74 0 0 chr6 96373031 96373112 -53143925 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 1320 1527 251 65 1 chr6 96373439 96373831 -53143206 - MTD LTR MaLR -16 403 3 5 1320 464 325 128 8 chr6 96374906 96375306 -53141731 - Zaphod2 DNA Tip100 0 3524 3077 5 1320 22 0 0 0 chr6 96375314 96375336 -53141701 + AT_rich Low_complexity Low_complexity 1 22 0 5 1320 417 287 33 42 chr6 96375337 96375457 -53141580 + PB1D7 SINE Alu 1 119 -1 5 1320 270 230 307 7 chr6 96375678 96375818 -53141219 - Zaphod2 DNA Tip100 -789 2735 2554 5 1320 234 193 0 0 chr6 96375826 96375883 -53141154 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1320 275 328 66 25 chr6 96376200 96376397 -53140640 - Zaphod2 DNA Tip100 -3318 206 2 5 1320 1611 127 110 42 chr6 96376703 96377040 -53139997 + Lx4A LINE L1 6699 7058 0 5 1320 22 0 0 0 chr6 96377040 96377062 -53139975 + AT_rich Low_complexity Low_complexity 1 22 0 5 1320 313 323 0 24 chr6 96377614 96377741 -53139296 + (CATA)n Simple_repeat Simple_repeat 2 125 0 5 1320 333 0 0 0 chr6 96377749 96377786 -53139251 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1320 22 0 0 0 chr6 96378230 96378252 -53138785 + AT_rich Low_complexity Low_complexity 1 22 0 5 1320 375 268 0 0 chr6 96378685 96378767 -53138270 - ID4_ SINE ID 0 83 2 5 1320 188 35 35 0 chr6 96380390 96380419 -53136618 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 5 1320 513 264 124 26 chr6 96380696 96380890 -53136147 + B4A SINE B4 14 226 -66 5 1320 685 280 5 35 chr6 96381670 96381870 -53135167 - B3A SINE B2 0 198 5 5 1320 197 140 0 23 chr6 96382254 96382298 -53134739 + GA-rich Low_complexity Low_complexity 2 44 0 5 1320 642 315 27 45 chr6 96382379 96382671 -53134366 + Lx8 LINE L1 6822 7108 -365 5 1320 305 237 0 0 chr6 96382851 96382910 -53134127 + ID2 SINE ID 3 61 -22 5 1320 268 243 14 0 chr6 96382910 96382921 -53134116 + B4 SINE B4 3 73 -219 5 1320 453 36 0 0 chr6 96383704 96383759 -53133278 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1320 256 343 64 23 chr6 96384026 96384199 -53132838 + LTR33A_ LTR ERVL 7 186 -345 5 1320 275 350 56 11 chr6 96384689 96384868 -53132169 + MIR SINE MIR 49 235 -27 5 1320 634 304 35 35 chr6 96385203 96385489 -53131548 - B4A SINE B4 -6 286 1 5 1320 512 321 65 29 chr6 96386467 96386544 -53130493 + B4A SINE B4 2 82 -210 5 1320 185 0 40 0 chr6 96386544 96386569 -53130468 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1320 512 321 65 29 chr6 96386569 96386770 -53130267 + B4A SINE B4 83 290 -2 5 1320 575 297 97 16 chr6 96387022 96387330 -53129707 - Lx8 LINE L1 -183 7290 6958 5 1320 310 341 0 15 chr6 96387374 96387511 -53129526 - Lx8 LINE L1 -734 6739 6605 5 1320 365 284 260 0 chr6 96388481 96388608 -53128429 + Arthur1C DNA Tip100 6 165 -198 6 1320 779 284 39 85 chr6 96388630 96389018 -53128019 - MTD LTR MaLR -20 399 19 6 1320 366 296 37 9 chr6 96389171 96389280 -53127757 - PB1D7 SINE Alu -8 112 1 6 1320 262 80 20 20 chr6 96390633 96390684 -53126353 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1320 1812 297 83 45 chr6 96391051 96391937 -53125100 - Lx8 LINE L1 -17 7456 6537 6 1320 374 316 45 20 chr6 96394155 96394355 -53122682 + L1M3 LINE L1 4789 4993 -1150 6 1320 203 114 100 0 chr6 96394903 96394973 -53122064 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 1320 611 276 92 36 chr6 96395135 96395558 -53121479 + L1M3 LINE L1 4995 5448 -864 6 1320 422 290 0 9 chr6 96395582 96395690 -53121347 + B4A SINE B4 182 288 -4 6 1320 270 286 108 39 chr6 96395923 96396025 -53121012 - MER5A1 DNA MER1_type -17 149 41 6 1320 21 36 0 0 chr6 96396897 96396925 -53120112 + AT_rich Low_complexity Low_complexity 1 28 0 6 1320 333 100 0 0 chr6 96397255 96397305 -53119732 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1320 39553 5 1 0 chr6 96398305 96404877 -53112160 - L1Md_A LINE L1 0 6582 8 6 1320 331 273 33 33 chr6 96405048 96405139 -53111898 + B4A SINE B4 2 92 -200 6 1320 752 330 14 7 chr6 96405143 96405418 -53111619 - Lx8 LINE L1 -720 6753 6477 6 1320 224 122 24 0 chr6 96405430 96405471 -53111566 + (CCCCCT)n Simple_repeat Simple_repeat 5 46 0 6 1320 494 286 120 16 chr6 96405477 96405719 -53111318 + Lx8 LINE L1 6946 7212 -261 6 1320 443 263 105 55 chr6 96405931 96406112 -53110925 + B4A SINE B4 103 292 0 6 1320 432 0 0 0 chr6 96406978 96407026 -53110011 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 6 1320 492 18 0 0 chr6 96407026 96407083 -53109954 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1320 246 128 0 0 chr6 96407233 96407272 -53109765 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1320 771 256 46 28 chr6 96407369 96407586 -53109451 + ID_B1 SINE B4 3 223 -1 6 1320 225 224 49 189 chr6 96407663 96407806 -53109231 - MLT1F LTR MaLR 0 548 426 6 1320 1702 176 105 96 chr6 96407928 96408367 -53108670 + RLTR41 LTR ERV1 1 443 -3 6 1320 614 210 307 6 chr6 96408403 96408566 -53108471 - B3 SINE B2 -4 212 1 6 1320 1813 170 20 56 chr6 96408939 96409331 -53107706 - RMER10B LTR ERVL -20 378 1 6 1320 360 64 0 0 chr6 96409806 96409853 -53107184 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 6 1320 1009 238 94 6 chr6 96410009 96410322 -53106715 + ORR1E LTR MaLR 11 370 0 6 1320 228 382 48 18 chr6 96411388 96411556 -53105481 + MER5A DNA MER1_type 1 173 -16 6 1320 28 0 0 0 chr6 96411924 96411952 -53105085 + AT_rich Low_complexity Low_complexity 1 28 0 6 1320 462 325 93 0 chr6 96411954 96412105 -53104932 + RSINE1 SINE B4 1 165 0 6 1320 181 98 24 24 chr6 96412184 96412226 -53104811 + (TTATA)n Simple_repeat Simple_repeat 3 44 0 6 1320 362 307 9 38 chr6 96414073 96414178 -53102859 - PB1D10 SINE Alu -3 114 13 6 1320 504 0 0 0 chr6 96415098 96415154 -53101883 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 6 1320 339 335 25 12 chr6 96415201 96415361 -53101676 + RLTR42-int LTR ERVK 1233 1394 -4128 6 1320 625 257 58 71 chr6 96416647 96416873 -53100164 + B4 SINE B4 1 223 -69 6 1320 246 136 0 0 chr6 96417008 96417052 -53099985 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1320 522 275 95 57 chr6 96417304 96417566 -53099471 - Tigger11a DNA MER2_type -2 733 462 6 1320 28 29 0 0 chr6 96418018 96418053 -53098984 + AT_rich Low_complexity Low_complexity 1 35 0 6 1320 545 174 16 0 chr6 96418558 96418679 -53098358 + CT-rich Low_complexity Low_complexity 2 124 0 6 1320 587 98 0 51 chr6 96418671 96418789 -53098248 + (TTTC)n Simple_repeat Simple_repeat 1 112 0 6 1320 266 348 35 18 chr6 96419160 96419274 -53097763 + MER5B DNA MER1_type 7 122 -56 6 1320 649 26 0 0 chr6 96419447 96419525 -53097512 - U6 snRNA snRNA -29 78 1 6 1320 463 306 39 28 chr6 96419655 96419833 -53097204 - MER34A1 LTR ERV1 -73 514 335 6 1320 878 247 88 4 chr6 96419885 96420145 -53096892 - B4 SINE B4 -10 282 1 6 1320 9121 131 12 94 chr6 96420541 96422244 -53094793 + RLTR21 LTR ERVK 1 1563 -9 6 1320 253 337 148 39 chr6 96423119 96423301 -53093736 + MER102a DNA MER1_type 61 262 -68 6 1320 283 329 80 42 chr6 96424246 96424459 -53092578 + L3 LINE CR1 4180 4400 -89 6 1320 531 225 49 42 chr6 96424486 96424630 -53092407 - MER3 DNA MER1_type -18 191 47 6 1320 180 152 0 0 chr6 96425175 96425208 -53091829 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1320 476 305 116 48 chr6 96425334 96425541 -53091496 - B4 SINE B4 -71 221 1 6 1320 288 0 0 0 chr6 96425648 96425680 -53091357 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1320 2205 295 39 40 chr6 96425703 96426764 -53090273 - Lx9 LINE L1 -228 7416 6358 6 1320 355 281 11 11 chr6 96428093 96428183 -53088854 + PB1D10 SINE Alu 17 106 -11 6 1320 259 188 0 0 chr6 96428615 96428663 -53088374 - MER57E1 LTR ERV1 -203 169 122 6 1320 344 344 95 72 chr6 96428946 96429250 -53087787 + MLT1D LTR MaLR 2 312 -193 6 1320 435 355 39 39 chr6 96429254 96429462 -53087575 + MLT1D LTR MaLR 278 485 -20 6 1320 268 238 48 19 chr6 96431471 96431574 -53085463 - Lx6 LINE L1 -26 7434 7329 6 1320 1925 191 32 8 chr6 96431767 96432141 -53084896 + MTD LTR MaLR 5 387 -32 6 1320 335 223 11 11 chr6 96432616 96432711 -53084326 + (CA)n Simple_repeat Simple_repeat 2 96 0 6 1320 4106 32 2 0 chr6 96432725 96433199 -53083838 - MT2C_Mm LTR ERVL 0 475 1 6 1320 549 44 0 0 chr6 96433222 96433290 -53083747 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1320 267 300 110 0 chr6 96433969 96434069 -53082968 + MIR SINE MIR 87 197 -65 6 1320 182 339 0 0 chr6 96434216 96434281 -53082756 + MIRb SINE MIR 125 189 -79 6 1320 742 123 8 8 chr6 96435773 96435904 -53081133 + (TCC)n Simple_repeat Simple_repeat 3 133 0 6 1320 826 308 19 19 chr6 96436457 96436672 -53080365 + B3 SINE B2 1 215 -1 6 1320 816 101 58 0 chr6 96437960 96438099 -53078938 - L1Md_F3 LINE L1 0 6584 6438 6 1320 2432 49 0 7 chr6 96438099 96438408 -53078629 + L1Md_F3 LINE L1 6144 6450 -132 6 1320 30 27 0 0 chr6 96438408 96438445 -53078592 + AT_rich Low_complexity Low_complexity 1 37 0 6 1320 189 180 0 0 chr6 96438510 96438560 -53078477 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 6 1320 2171 133 125 0 chr6 96438814 96439206 -53077831 - BGLII_B LTR ERVK 0 441 1 6 1320 812 326 68 8 chr6 96439537 96439803 -53077234 + B4A SINE B4 11 292 0 6 1320 193 29 29 29 chr6 96440427 96440462 -53076575 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 6 1320 375 227 32 69 chr6 96440730 96440919 -53076118 - Lx9 LINE L1 -5 7639 7458 6 1320 203 162 27 0 chr6 96440919 96440956 -53076081 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1320 2706 259 95 74 chr6 96440981 96442142 -53074895 - Lx9 LINE L1 -101 7543 6359 6 1320 184 407 40 48 chr6 96442414 96442538 -53074499 + L2b LINE L2 3225 3347 -28 6 1320 319 343 126 1 chr6 96442694 96442850 -53074187 - MIRb SINE MIR -76 186 20 6 1320 1853 251 36 36 chr6 96444598 96445123 -53071914 - RLTR11A2 LTR ERVK 0 527 3 6 1320 303 361 43 63 chr6 96445889 96446096 -53070941 + MIRb SINE MIR 2 204 -64 6 1320 1111 92 10 10 chr6 96446116 96446414 -53070623 + (CA)n Simple_repeat Simple_repeat 1 298 0 6 1320 382 284 69 0 chr6 96446671 96446773 -53070264 - ID_B1 SINE B4 -114 110 2 6 1320 556 295 90 67 chr6 96446904 96447082 -53069955 - ID_B1 SINE B4 -76 216 35 6 1320 356 283 53 67 chr6 96447097 96447292 -53069745 + MER58A DNA MER1_type 11 212 -12 6 1320 205 250 21 0 chr6 96448577 96448625 -53068412 + CT-rich Low_complexity Low_complexity 3 51 0 6 1320 245 321 38 13 chr6 96448626 96448705 -53068332 - RSINE1 SINE B4 -6 159 79 6 1320 399 288 38 88 chr6 96448744 96448904 -53068133 - B4A SINE B4 -131 161 10 6 1320 347 299 42 93 chr6 96450305 96450637 -53066400 + L1MA6 LINE L1 5985 6299 -1 6 1320 919 237 36 0 chr6 96451121 96451315 -53065722 - B3 SINE B2 -14 202 2 6 1320 994 186 70 0 chr6 96451607 96451806 -53065231 + Lx4A LINE L1 6801 7013 -45 6 1320 422 349 177 21 chr6 96451885 96452219 -53064818 - L1ME3 LINE L1 -142 6020 5635 6 1320 223 49 0 47 chr6 96454468 96454511 -53062526 + (TTAA)n Simple_repeat Simple_repeat 1 41 0 6 1320 342 346 111 62 chr6 96454761 96455004 -53062033 - MLT1E1A LTR MaLR -36 644 390 6 1320 887 306 20 37 chr6 96455177 96455472 -53061565 - B4A SINE B4 -1 291 2 6 1320 482 262 28 91 chr6 96455627 96455770 -53061267 + MER2B DNA MER2_type 199 332 -4 6 1320 926 292 53 53 chr6 96457769 96458109 -53058928 + MER58B DNA MER1_type 2 341 0 6 1320 180 111 0 0 chr6 96458231 96458258 -53058779 + (TTC)n Simple_repeat Simple_repeat 2 28 0 6 1320 1201 55 0 14 chr6 96458262 96458410 -53058627 - B1_Mus2 SINE Alu -1 146 1 6 1320 199 362 61 41 chr6 96458546 96458742 -53058295 - MIR SINE MIR -51 211 12 6 1320 1233 156 38 5 chr6 96458816 96459028 -53058009 + URR1B DNA MER1_type 7 225 0 6 1320 546 16 0 0 chr6 96460985 96461048 -53055989 + (TCC)n Simple_repeat Simple_repeat 2 64 0 6 1320 196 283 18 36 chr6 96461422 96461477 -53055560 - MIR SINE MIR -188 74 21 6 1320 893 35 6 66 chr6 96461527 96461710 -53055327 + (TTCTC)n Simple_repeat Simple_repeat 1 172 0 6 1320 4800 135 23 16 chr6 96461710 96462484 -53054553 - Lx LINE L1 -2 6652 5873 6 1320 1447 244 50 19 chr6 96463002 96463365 -53053672 - MTD LTR MaLR 0 419 46 7 1320 381 70 0 0 chr6 96463455 96463512 -53053525 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1320 262 0 26 26 chr6 96463617 96463656 -53053381 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1320 230 277 12 12 chr6 96463819 96463903 -53053134 + Lx8 LINE L1 7385 7468 -5 7 1320 217 297 0 15 chr6 96463964 96464029 -53053008 + CT-rich Low_complexity Low_complexity 1 64 0 7 1320 943 94 0 43 chr6 96464239 96464427 -53052610 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1320 387 0 0 0 chr6 96464436 96464479 -53052558 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1320 8116 22 0 0 chr6 96465897 96467335 -53049702 - L1Md_T LINE L1 0 6582 5145 7 1320 510 261 93 33 chr6 96468040 96468222 -53048815 - B4A SINE B4 -99 193 1 7 1320 227 344 117 71 chr6 96468339 96468792 -53048245 - L2a LINE L2 -9 3417 2944 7 1321 1618 273 70 47 chr6 96469706 96470537 -53046500 + L1MC3 LINE L1 6767 7616 -169 7 1321 426 299 31 68 chr6 96470555 96470890 -53046147 + L1MC3 LINE L1 6811 7069 -926 7 1321 210 222 0 0 chr6 96471322 96471376 -53045661 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1321 202 206 0 0 chr6 96471401 96471435 -53045602 + polypyrimidine Low_complexity Low_complexity 1 34 0 7 1321 1306 129 64 4 chr6 96471654 96471887 -53045150 - Lx LINE L1 -1 6653 6407 7 1321 566 310 106 68 chr6 96473589 96473928 -53043109 + MLT1A0 LTR MaLR 7 358 -7 7 1321 221 250 133 0 chr6 96474108 96474168 -53042869 - L2a LINE L2 -4 3422 3355 7 1321 648 315 182 43 chr6 96474265 96474318 -53042719 - MLT1F LTR MaLR -13 535 479 7 1321 518 322 90 5 chr6 96474318 96474518 -53042519 + ID_B1 SINE B4 3 219 -5 7 1321 648 315 182 43 chr6 96474518 96474932 -53042105 - MLT1F LTR MaLR -70 478 3 7 1321 443 274 36 78 chr6 96475801 96475967 -53041070 + MER20 DNA MER1_type 6 164 -55 7 1321 261 245 54 9 chr6 96476691 96476802 -53040235 - L1M5 LINE L1 -240 5884 5769 7 1321 262 271 48 31 chr6 96477790 96477914 -53039123 - MIRb SINE MIR -114 162 34 7 1321 519 78 0 0 chr6 96478126 96478203 -53038834 + (TG)n Simple_repeat Simple_repeat 2 78 0 7 1321 2590 215 50 21 chr6 96478976 96479656 -53037381 - Lx9 LINE L1 -3 7641 6942 7 1321 379 362 0 19 chr6 96479685 96479792 -53037245 + PB1D10 SINE Alu 4 108 -9 7 1321 318 50 0 0 chr6 96480031 96480071 -53036966 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1321 232 206 68 14 chr6 96481355 96481429 -53035608 + L1MA7 LINE L1 6211 6288 -3 7 1321 225 343 59 0 chr6 96481674 96481843 -53035194 + L1M5 LINE L1 5340 5518 -606 7 1321 253 312 12 0 chr6 96482210 96482290 -53034747 + (TG)n Simple_repeat Simple_repeat 1 81 0 7 1321 674 340 127 24 chr6 96482903 96483234 -53033803 + MTE2a LTR MaLR 1 365 -14 7 1321 321 170 10 60 chr6 96483763 96483863 -53033174 + A-rich Low_complexity Low_complexity 1 95 0 7 1321 1240 266 67 20 chr6 96483921 96484220 -53032817 + MTE2b LTR MaLR 2 314 -65 7 1321 4031 197 173 10 chr6 96484243 96485313 -53031724 - Lx9 LINE L1 0 7644 6401 7 1321 254 180 16 0 chr6 96485959 96486020 -53031017 + (TCCA)n Simple_repeat Simple_repeat 2 63 0 7 1321 250 371 83 68 chr6 96486020 96486356 -53030681 - L2b LINE L2 0 3375 3035 7 1321 712 257 72 142 chr6 96487250 96487763 -53029274 - Lx9 LINE L1 -155 7489 7013 7 1321 294 322 33 16 chr6 96488440 96488592 -53028445 - MIR SINE MIR -68 208 48 7 1321 1890 172 69 9 chr6 96488836 96489171 -53027866 - MTC LTR MaLR 0 421 67 7 1321 244 246 174 0 chr6 96489253 96489322 -53027715 + PB1D7 SINE Alu 32 112 -8 7 1321 753 321 46 83 chr6 96489821 96490040 -53026997 + B4 SINE B4 2 212 -80 7 1321 351 0 0 0 chr6 96490040 96490079 -53026958 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 7 1321 753 321 46 83 chr6 96490079 96490161 -53026876 + B4 SINE B4 213 292 0 7 1321 374 188 0 10 chr6 96490161 96490263 -53026774 + GA-rich Low_complexity Low_complexity 1 101 0 7 1321 190 304 37 37 chr6 96490396 96490478 -53026559 - MER5B DNA MER1_type -3 175 94 7 1321 478 215 30 68 chr6 96490743 96490877 -53026160 + B1_Mur1 SINE Alu 13 144 -5 7 1321 317 306 101 29 chr6 96490908 96491046 -53025991 + MIRc SINE MIR 106 253 -15 7 1321 1107 286 106 6 chr6 96491967 96492287 -53024750 - MTEa LTR MaLR 0 379 28 7 1321 324 359 72 0 chr6 96494399 96494488 -53022549 + MER58A DNA MER1_type 40 132 -92 7 1321 423 0 0 0 chr6 96494488 96494535 -53022502 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1321 324 359 72 0 chr6 96494535 96494612 -53022425 + MER58A DNA MER1_type 133 217 -7 7 1321 193 327 98 18 chr6 96495392 96495504 -53021533 - MIRc SINE MIR -54 214 94 7 1321 221 57 29 0 chr6 96495630 96495665 -53021372 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 7 1321 473 341 52 33 chr6 96496372 96496736 -53020301 - Charlie4a DNA MER1_type -62 446 76 7 1321 249 222 55 14 chr6 96497788 96497861 -53019176 + Charlie8 DNA MER1_type 375 450 -1978 7 1321 821 308 90 32 chr6 96498720 96499163 -53017874 + Lx9 LINE L1 6959 7427 -217 7 1321 262 235 0 89 chr6 96501788 96501868 -53015169 + B1F SINE Alu 39 109 -8 1 1321 723 81 0 0 chr6 96501907 96502006 -53015031 + (GA)n Simple_repeat Simple_repeat 2 100 0 2 1321 2640 128 18 126 chr6 96502019 96502227 -53014810 - RLTR11B LTR ERVK 0 453 239 3 1321 1287 72 0 0 chr6 96502227 96502407 -53014630 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1321 2640 128 18 126 chr6 96502407 96502706 -53014331 - RLTR11B LTR ERVK -215 238 1 3 1321 753 257 146 27 chr6 96502809 96503145 -53013892 - L1MA8 LINE L1 -1 6290 5915 5 1321 279 284 12 47 chr6 96503425 96503510 -53013527 + ID2 SINE ID 2 83 0 6 1321 385 287 122 25 chr6 96503531 96503752 -53013285 - L1_Mur3 LINE L1 -2362 3485 3234 7 1321 687 12 0 0 chr6 96503752 96503832 -53013205 + (TC)n Simple_repeat Simple_repeat 1 80 0 8 1321 385 285 123 24 chr6 96503832 96503894 -53013143 - L1_Mur3 LINE L1 -2647 3233 3159 7 1321 492 62 0 0 chr6 96503973 96504037 -53013000 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 9 1321 2603 60 12 0 chr6 96504040 96504374 -53012663 - ORR1A1 LTR MaLR -8 338 1 1 1321 243 79 0 0 chr6 96504491 96504529 -53012508 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1321 186 347 45 77 chr6 96506341 96506497 -53010540 - MER5A DNA MER1_type -35 154 4 1 1321 339 270 117 86 chr6 96507071 96507119 -53009918 - RLTR42-int LTR ERVK -4122 1400 1358 1 1321 1091 110 17 17 chr6 96507119 96507295 -53009742 - L1_Mus3 LINE L1 -6 6632 6457 1 1321 339 270 117 86 chr6 96507295 96507408 -53009629 - RLTR42-int LTR ERVK -4165 1357 1234 1 1321 183 301 49 99 chr6 96509527 96509689 -53007348 - L2a LINE L2 -76 3350 3197 1 1321 261 0 0 0 chr6 96509842 96509871 -53007166 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1321 1122 192 188 6 chr6 96509941 96510276 -53006761 - RMER6C LTR ERVK 0 690 295 1 1321 356 189 51 25 chr6 96510294 96510575 -53006462 + (TG)n Simple_repeat Simple_repeat 1 288 0 1 1321 321 296 40 40 chr6 96510606 96510754 -53006283 - B1F SINE Alu -1 148 1 1 1321 552 216 29 0 chr6 96510754 96510856 -53006181 - U6 snRNA snRNA 0 107 3 2 1321 363 305 78 74 chr6 96511422 96511680 -53005357 + MamRep4096 DNA hAT? 168 426 0 2 1321 216 204 0 0 chr6 96512170 96512214 -53004823 + A-rich Low_complexity Low_complexity 1 44 0 2 1321 225 314 66 73 chr6 96512327 96512478 -53004559 + MIRb SINE MIR 4 153 -115 2 1321 250 284 58 19 chr6 96512553 96512657 -53004380 + L1MD2 LINE L1 6073 6180 -179 2 1321 420 368 105 22 chr6 96512921 96513235 -53003802 - LTR33B LTR ERVL 0 503 164 2 1321 21 0 0 0 chr6 96513783 96513804 -53003233 + AT_rich Low_complexity Low_complexity 1 21 0 2 1321 3796 143 85 19 chr6 96514618 96515254 -53001783 - RLTR33 LTR ERVK 0 678 1 2 1321 9128 89 25 6 chr6 96515900 96517125 -52999912 - Lx3_Mus LINE L1 0 7009 5762 2 1321 4533 199 35 35 chr6 96517485 96518448 -52998589 - Lx5 LINE L1 0 7050 6088 2 1321 1579 50 22 0 chr6 96518942 96519123 -52997914 - B2_Mm1a SINE B2 -5 188 4 3 1321 323 340 79 43 chr6 96519147 96519424 -52997613 - L1ME3A LINE L1 -311 5862 5576 3 1321 684 289 50 61 chr6 96519523 96519803 -52997234 - B4A SINE B4 -15 277 1 3 1321 241 163 0 0 chr6 96519904 96519953 -52997084 + A-rich Low_complexity Low_complexity 1 49 0 3 1321 1682 198 29 6 chr6 96521352 96521693 -52995344 + RLTR15 LTR ERVK 3 351 -8 3 1321 417 324 79 7 chr6 96522059 96522199 -52994838 + MER5A DNA MER1_type 22 171 -18 3 1321 629 172 0 17 chr6 96522208 96522326 -52994711 - URR1B DNA MER1_type 0 225 110 3 1321 426 39 0 0 chr6 96522714 96522766 -52994271 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1321 28 71 0 0 chr6 96522778 96522834 -52994203 + AT_rich Low_complexity Low_complexity 1 56 0 3 1321 5004 97 16 0 chr6 96522925 96523604 -52993433 + L1_Mus3 LINE L1 5949 6638 0 3 1321 307 333 94 39 chr6 96523679 96523913 -52993124 + ORR1E LTR MaLR 6 252 -107 4 1321 247 279 69 11 chr6 96523946 96524033 -52993004 + ORR1E LTR MaLR 279 370 -9 4 1321 198 304 130 25 chr6 96524175 96524337 -52992700 + MIRb SINE MIR 50 228 -40 4 1321 284 290 35 78 chr6 96524516 96524658 -52992379 + MT2B LTR ERVL 143 278 -323 4 1321 809 187 0 7 chr6 96524545 96524685 -52992352 + B1_Mur1 SINE Alu 10 148 -1 4 1321 332 351 71 35 chr6 96524870 96525068 -52991969 - Lx8 LINE L1 -103 7370 7166 4 1321 1910 74 0 8 chr6 96525068 96525326 -52991711 - L1_Mm LINE L1 -505 5378 5123 4 1321 3487 93 51 0 chr6 96525327 96525826 -52991211 + L1_Mus1 LINE L1 6086 6567 0 4 1321 2822 300 46 13 chr6 96525827 96526695 -52990342 - Lx8 LINE L1 -292 7181 6285 4 1321 1158 96 0 0 chr6 96526782 96526948 -52990089 + (GGGGA)n Simple_repeat Simple_repeat 5 170 0 4 1321 234 158 0 0 chr6 96527978 96528016 -52989021 - Lx8 LINE L1 -1182 6291 6254 4 1321 201 67 63 48 chr6 96528055 96528118 -52988919 + (ATATG)n Simple_repeat Simple_repeat 2 65 0 4 1321 244 283 17 34 chr6 96528230 96528347 -52988690 - Lx8 LINE L1 -1299 6174 6060 4 1321 361 352 65 49 chr6 96528882 96529127 -52987910 + MLT1K LTR MaLR 22 270 -325 4 1321 319 326 64 37 chr6 96529139 96529327 -52987710 + MLT1K LTR MaLR 334 526 -69 4 1321 390 326 59 84 chr6 96529548 96529839 -52987198 + B4A SINE B4 15 290 -2 5 1321 235 319 52 21 chr6 96530245 96530341 -52986696 - L2 LINE L2 -927 2492 2394 5 1321 406 344 18 28 chr6 96531159 96531332 -52985705 - MTEa LTR MaLR -11 368 203 5 1321 826 281 149 41 chr6 96531504 96531600 -52985437 - ORR1E-int LTR MaLR -115 1465 1355 5 1321 180 0 0 0 chr6 96531600 96531620 -52985417 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 1321 826 299 149 53 chr6 96531620 96532117 -52984920 - ORR1E-int LTR MaLR -226 1354 659 5 1321 868 246 18 44 chr6 96532100 96532325 -52984712 - ORR1E-int LTR MaLR -1157 423 205 5 1321 350 227 27 0 chr6 96532326 96532396 -52984641 - ORR1E-int LTR MaLR -1497 83 12 5 1321 496 327 49 63 chr6 96532396 96532770 -52984267 - ORR1E LTR MaLR -2 377 1 5 1321 1238 54 0 13 chr6 96532921 96533071 -52983966 + B1_Mus1 SINE Alu 1 148 0 5 1321 4233 46 4 0 chr6 96533580 96534060 -52982977 - L1Md_T LINE L1 -2 6580 6099 5 1321 2946 32 0 0 chr6 96534060 96534403 -52982634 + L1Md_A LINE L1 5756 6098 -484 5 1321 321 376 45 25 chr6 96534490 96534692 -52982345 + MIRb SINE MIR 27 232 -36 5 1321 478 307 0 0 chr6 96535268 96535393 -52981644 + B1F SINE Alu 1 124 -26 5 1321 1751 151 60 20 chr6 96535393 96535679 -52981358 + Lx4A LINE L1 6747 7046 -12 6 1321 188 35 35 0 chr6 96535679 96535708 -52981329 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 6 1321 1751 151 60 20 chr6 96535708 96535719 -52981318 + Lx4A LINE L1 7047 7056 -2 6 1321 362 331 6 51 chr6 96535719 96535749 -52981288 + B1_Mur4 SINE Alu 125 149 -1 5 1321 1266 276 43 33 chr6 96535853 96536340 -52980697 - Charlie1a DNA MER1_type -533 922 431 6 1321 466 305 102 24 chr6 96536471 96536676 -52980361 - Charlie1a DNA MER1_type -1205 250 30 6 1321 240 317 16 4 chr6 96536736 96536849 -52980188 + Charlie8 DNA MER1_type 49 163 -2265 6 1321 1428 141 4 43 chr6 96537417 96537647 -52979390 + URR1B DNA MER1_type 5 225 0 6 1321 186 128 0 0 chr6 96537982 96538021 -52979016 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1321 510 267 56 59 chr6 96538589 96538921 -52978116 - L1M3 LINE L1 -376 5795 5454 6 1321 300 333 65 0 chr6 96540065 96540203 -52976834 + Tigger13a DNA MER2_type 156 302 -469 6 1321 206 175 25 0 chr6 96540275 96540315 -52976722 + A-rich Low_complexity Low_complexity 1 41 0 6 1321 724 122 0 0 chr6 96540325 96540423 -52976614 + B1_Mur1 SINE Alu 10 107 -42 6 1321 384 204 0 109 chr6 96540326 96540436 -52976601 + MT2B LTR ERVL 175 272 -329 7 1321 277 363 17 34 chr6 96540489 96540666 -52976371 + Tigger13a DNA MER2_type 489 662 -109 6 1321 594 0 0 0 chr6 96541558 96541624 -52975413 + (CAG)n Simple_repeat Simple_repeat 3 68 0 7 1321 3440 66 2 0 chr6 96541651 96542061 -52974976 + L1_Mus1 LINE L1 6155 6565 -2 7 1321 267 104 0 0 chr6 96542588 96542636 -52974401 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 1321 337 156 131 83 chr6 96542637 96542721 -52974316 - HAL1-3A_ME LINE L1 -823 2035 1948 7 1321 468 0 0 0 chr6 96544063 96544115 -52972922 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1321 282 29 0 0 chr6 96544154 96544189 -52972848 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 7 1321 24 53 0 0 chr6 96544224 96544262 -52972775 + AT_rich Low_complexity Low_complexity 1 38 0 7 1321 186 43 0 0 chr6 96544365 96544388 -52972649 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1321 234 278 61 18 chr6 96545026 96545191 -52971846 - Charlie10 DNA MER1_type -17 2805 2634 7 1321 36287 35 1 0 chr6 96545451 96551883 -52965154 + L1Md_T LINE L1 1 5589 -297 8 1321 9586 5 0 0 chr6 96551883 96552879 -52964158 + L1Md_T LINE L1 5590 6585 0 8 1321 25 0 0 0 chr6 96553134 96553159 -52963878 + AT_rich Low_complexity Low_complexity 1 25 0 8 1321 1721 186 110 28 chr6 96553241 96553596 -52963441 + ORR1C2 LTR MaLR 1 384 0 8 1321 239 253 169 0 chr6 96554367 96554450 -52962587 - MIR SINE MIR -40 222 126 8 1321 935 304 30 47 chr6 96556460 96556757 -52960280 - B4 SINE B4 0 292 1 8 1321 906 207 8 30 chr6 96556976 96557210 -52959827 - Lx7 LINE L1 0 7696 7468 8 1321 4243 154 19 9 chr6 96557214 96558026 -52959011 - L1_Mur3 LINE L1 -328 5552 4733 8 1321 703 56 0 0 chr6 96559263 96559352 -52957685 + L1Md_F2 LINE L1 5498 5586 -297 8 1321 8015 45 2 4 chr6 96559353 96560348 -52956689 + L1Md_F2 LINE L1 5588 6580 -2 8 1321 383 296 74 36 chr6 96560348 96560684 -52956353 + L1MA5 LINE L1 5724 6072 -228 8 1321 216 0 0 0 chr6 96560744 96560768 -52956269 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1321 225 241 58 46 chr6 96560829 96560916 -52956121 + L1MA5 LINE L1 6204 6291 -9 8 1321 318 316 50 50 chr6 96562475 96562595 -52954442 - ORR1E LTR MaLR -239 120 1 9 1321 771 11 0 0 chr6 96562978 96563066 -52953971 + (TC)n Simple_repeat Simple_repeat 1 88 0 9 1321 271 68 12 75 chr6 96563717 96563797 -52953240 + (TTG)n Simple_repeat Simple_repeat 2 76 0 9 1321 269 277 133 9 chr6 96564782 96564895 -52952142 - MIRc SINE MIR -51 217 91 9 1321 3069 93 22 2 chr6 96565263 96565715 -52951322 + Lx LINE L1 6194 6654 0 9 1321 1198 61 0 0 chr6 96565913 96566060 -52950977 + B1_Mus1 SINE Alu 2 148 0 9 1321 480 35 0 0 chr6 96566085 96566143 -52950894 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 9 1321 1359 67 0 0 chr6 96566143 96566321 -52950716 + (GA)n Simple_repeat Simple_repeat 2 180 0 9 1321 227 152 0 21 chr6 96566321 96566368 -52950669 + GA-rich Low_complexity Low_complexity 3 48 0 9 1321 183 273 0 0 chr6 96566712 96566756 -52950281 + MIRm SINE MIR 225 268 -8 9 1321 38922 14 2 6 chr6 96566874 96573272 -52943765 - L1Md_A LINE L1 -2 6580 209 1 1321 387 163 139 30 chr6 96573389 96573557 -52943480 - B2_Mm2 SINE B2 0 195 2 1 1321 1118 115 40 0 chr6 96573557 96573731 -52943306 - B2_Mm2 SINE B2 -14 181 1 1 1321 496 335 103 42 chr6 96573881 96574173 -52942864 - MLT1H1 LTR MaLR -92 503 193 1 1321 565 355 79 30 chr6 96574173 96574478 -52942559 - MLT1H1 LTR MaLR 0 555 236 1 1321 228 380 11 0 chr6 96574670 96574762 -52942275 - MLT1H1 LTR MaLR -401 194 102 1 1321 189 231 21 161 chr6 96574933 96575026 -52942011 + MIRc SINE MIR 92 171 -97 1 1321 319 211 0 21 chr6 96576185 96576282 -52940755 + CT-rich Low_complexity Low_complexity 2 96 0 1 1321 305 240 67 37 chr6 96576519 96576653 -52940384 + L1MC3 LINE L1 6509 6646 -1139 1 1321 823 241 20 0 chr6 96577216 96577415 -52939622 + B3 SINE B2 5 207 -9 1 1321 636 281 189 8 chr6 96577701 96577945 -52939092 + B4 SINE B4 5 292 0 1 1321 746 275 74 10 chr6 96578616 96578818 -52938219 + B3 SINE B2 2 216 0 1 1321 195 42 0 0 chr6 96578981 96579005 -52938032 + (TATG)n Simple_repeat Simple_repeat 3 26 0 1 1321 672 226 130 50 chr6 96579026 96579226 -52937811 - B3 SINE B2 0 216 1 1 1321 379 298 92 0 chr6 96580111 96580252 -52936785 + MLT1A0 LTR MaLR 210 363 -2 1 1321 252 361 81 27 chr6 96580359 96580544 -52936493 - MLT1A0 LTR MaLR -3 387 193 1 1321 1719 43 0 0 chr6 96580549 96580760 -52936277 - L1Md_T LINE L1 0 6582 6372 1 1321 570 282 37 47 chr6 96580779 96580969 -52936068 - MLT1A0 LTR MaLR -176 189 2 1 1321 180 0 0 0 chr6 96581435 96581455 -52935582 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1321 1068 88 0 45 chr6 96583166 96583311 -52933726 + B1_Mus1 SINE Alu 2 140 -8 1 1321 261 0 0 0 chr6 96583311 96583340 -52933697 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1321 580 114 56 12 chr6 96583405 96583565 -52933472 + (TG)n Simple_repeat Simple_repeat 1 167 0 1 1321 696 83 0 0 chr6 96583594 96583703 -52933334 + (GA)n Simple_repeat Simple_repeat 1 109 0 1 1321 261 247 82 0 chr6 96585035 96585108 -52931929 - MLT1H2 LTR MaLR -325 164 86 1 1321 810 219 72 5 chr6 96586012 96586205 -52930832 + B3 SINE B2 2 207 -9 1 1321 755 294 20 53 chr6 96587776 96588078 -52928959 + B4A SINE B4 1 292 0 1 1321 213 39 0 0 chr6 96588102 96588128 -52928909 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1321 343 188 0 0 chr6 96588151 96588215 -52928822 + HAL1-3A_ME LINE L1 1976 2039 -819 1 1321 752 87 0 10 chr6 96589317 96589421 -52927616 + B2_Mm2 SINE B2 1 103 -92 1 1321 8584 92 45 14 chr6 96589424 96591418 -52925619 + L1_Mus2 LINE L1 4517 6566 0 1 1321 4986 113 59 45 chr6 96591451 96592310 -52924727 + Lx LINE L1 5784 6654 0 1 1321 1888 208 54 14 chr6 96592327 96592829 -52924208 + Lx9 LINE L1 7005 7526 -118 1 1321 221 224 20 0 chr6 96592848 96592897 -52924140 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1321 468 253 50 6 chr6 96592898 96593077 -52923960 + Lx9 LINE L1 7458 7644 0 1 1321 202 316 83 65 chr6 96593546 96593715 -52923322 + MIRm SINE MIR 51 222 -54 1 1321 23 0 0 0 chr6 96594146 96594169 -52922868 + AT_rich Low_complexity Low_complexity 1 23 0 1 1321 440 200 0 7 chr6 96594735 96594871 -52922166 + GA-rich Low_complexity Low_complexity 1 135 0 1 1321 428 328 53 10 chr6 96595028 96595234 -52921803 + B3 SINE B2 1 215 -1 1 1321 33 0 0 0 chr6 96595264 96595297 -52921740 + AT_rich Low_complexity Low_complexity 1 33 0 1 1321 603 151 113 40 chr6 96595347 96595471 -52921566 - B1_Mm SINE Alu 0 147 15 1 1321 285 238 11 106 chr6 96595388 96595482 -52921555 - MT2B LTR ERVL -349 252 168 1 1321 25 0 0 0 chr6 96595783 96595808 -52921229 + AT_rich Low_complexity Low_complexity 1 25 0 1 1321 605 280 38 2 chr6 96597277 96597459 -52919578 + B3 SINE B2 2 198 0 1 1321 934 250 10 5 chr6 96597832 96598041 -52918996 - B3 SINE B2 -5 211 2 1 1321 377 168 37 0 chr6 96598176 96598283 -52918754 + (CATATA)n Simple_repeat Simple_repeat 4 114 0 1 1321 237 65 0 0 chr6 96598496 96598527 -52918510 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1322 940 231 85 64 chr6 96601549 96601831 -52915206 + B4A SINE B4 2 289 -3 1 1322 180 0 0 0 chr6 96602842 96602862 -52914175 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1322 23 0 0 0 chr6 96603169 96603192 -52913845 + AT_rich Low_complexity Low_complexity 1 23 0 1 1322 22 0 0 0 chr6 96603789 96603811 -52913226 + AT_rich Low_complexity Low_complexity 1 22 0 1 1322 592 321 12 12 chr6 96604365 96604535 -52912502 - MER45A DNA Tip100 -7 171 2 1 1322 27 49 0 0 chr6 96605080 96605121 -52911916 + AT_rich Low_complexity Low_complexity 1 41 0 1 1322 333 0 0 0 chr6 96606083 96606120 -52910917 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1322 22 0 0 0 chr6 96606461 96606483 -52910554 + AT_rich Low_complexity Low_complexity 1 22 0 1 1322 441 248 0 52 chr6 96606628 96606743 -52910294 + PB1D10 SINE Alu 9 117 0 1 1322 6174 49 10 3 chr6 96607345 96608121 -52908916 - L1_Mus2 LINE L1 0 6566 5785 1 1322 486 0 0 0 chr6 96609332 96609386 -52907651 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1322 300 27 0 0 chr6 96609386 96609422 -52907615 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1322 244 311 43 32 chr6 96611437 96611530 -52905507 + LTR16E1 LTR ERVL 238 331 -207 1 1322 619 149 0 16 chr6 96612021 96612144 -52904893 + CT-rich Low_complexity Low_complexity 3 123 0 1 1322 885 299 13 18 chr6 96612433 96612661 -52904376 + B4 SINE B4 12 238 -54 1 1322 369 284 8 33 chr6 96612803 96612923 -52904114 + PB1D10 SINE Alu 1 117 0 1 1322 233 352 41 53 chr6 96613184 96613427 -52903610 + L3 LINE CR1 2696 2935 -1554 1 1322 22 35 0 0 chr6 96614057 96614086 -52902951 + AT_rich Low_complexity Low_complexity 1 29 0 1 1322 192 276 73 57 chr6 96614603 96614726 -52902311 + L3 LINE CR1 4082 4206 -283 1 1322 745 107 8 8 chr6 96614921 96615044 -52901993 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 1 1322 678 174 0 24 chr6 96615624 96615730 -52901307 - ORR1B1 LTR MaLR -233 161 59 1 1322 290 356 3 0 chr6 96615730 96615864 -52901173 + B1F SINE Alu 1 135 -14 1 1322 451 143 93 28 chr6 96616356 96616464 -52900573 - RMER4B LTR ERVK -470 115 1 1 1322 23 0 0 0 chr6 96616681 96616704 -52900333 + AT_rich Low_complexity Low_complexity 1 23 0 1 1322 2383 152 15 8 chr6 96617139 96617530 -52899507 - ORR1B1 LTR MaLR 0 394 1 1 1322 186 43 0 0 chr6 96617607 96617630 -52899407 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1322 824 204 124 5 chr6 96617934 96618136 -52898901 + URR1A DNA MER1_type 1 226 0 1 1322 1565 222 83 18 chr6 96618319 96618705 -52898332 - MTD LTR MaLR -8 411 1 1 1322 192 77 0 0 chr6 96619320 96619346 -52897691 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1 1322 396 103 0 0 chr6 96619691 96619749 -52897288 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 1 1322 493 272 67 131 chr6 96619924 96620073 -52896964 - L1MC5 LINE L1 -676 7285 7161 1 1322 292 313 61 8 chr6 96620073 96620205 -52896832 - B1F1 SINE Alu -10 139 1 1 1322 493 272 67 131 chr6 96620205 96620491 -52896546 - L1MC5 LINE L1 -801 7160 6878 1 1322 576 0 0 0 chr6 96620861 96620925 -52896112 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1322 436 328 137 4 chr6 96621144 96621407 -52895630 + MER58B DNA MER1_type 43 340 -1 1 1322 699 267 79 8 chr6 96621347 96621600 -52895437 - Charlie4a DNA MER1_type 0 508 238 1 1322 248 225 42 0 chr6 96621607 96621676 -52895361 + ID4_ SINE ID 2 78 -74 1 1322 363 96 0 0 chr6 96621909 96621961 -52895076 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1322 363 44 0 0 chr6 96621961 96622006 -52895031 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1322 581 320 86 23 chr6 96622380 96622636 -52894401 + B4A SINE B4 5 276 -16 1 1322 396 0 0 0 chr6 96622651 96622695 -52894342 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1322 1366 157 4 9 chr6 96622804 96623029 -52894008 + URR1A DNA MER1_type 1 224 -2 1 1322 306 20 19 38 chr6 96624032 96624085 -52892952 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 1 1322 795 75 0 0 chr6 96624787 96624907 -52892130 + (GA)n Simple_repeat Simple_repeat 1 120 0 1 1322 189 154 0 0 chr6 96624908 96624947 -52892090 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1322 225 128 0 0 chr6 96625339 96625386 -52891651 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1322 467 312 57 24 chr6 96625617 96625827 -52891210 + ID_B1 SINE B4 5 221 -3 1 1322 329 403 33 21 chr6 96625888 96626131 -52890906 - L2a LINE L2 -189 3237 2992 1 1322 692 299 98 121 chr6 96626777 96627074 -52889963 + B4 SINE B4 1 290 -2 1 1322 486 114 0 0 chr6 96627082 96627161 -52889876 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1322 389 20 20 0 chr6 96627766 96627816 -52889221 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1322 186 167 0 0 chr6 96627824 96627860 -52889177 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1322 1343 71 39 0 chr6 96628317 96628499 -52888538 - B2_Mm2 SINE B2 -2 193 5 1 1322 762 11 0 0 chr6 96628840 96628927 -52888110 + (TC)n Simple_repeat Simple_repeat 2 88 0 1 1322 2099 109 13 0 chr6 96628927 96629238 -52887799 - ORR1A2 LTR MaLR -12 315 1 1 1322 218 269 60 37 chr6 96630600 96630716 -52886321 - MIR SINE MIR -123 145 24 1 1322 708 311 91 140 chr6 96630716 96631043 -52885994 - MLT1D LTR MaLR -5 500 174 1 1322 648 260 52 0 chr6 96631043 96631216 -52885821 + B3A SINE B2 2 183 -15 1 1322 708 311 91 140 chr6 96631216 96631396 -52885641 - MLT1D LTR MaLR -332 173 18 1 1322 15514 116 15 19 chr6 96631714 96634868 -52882169 + Lx4A LINE L1 3317 6470 -588 1 1322 547 176 97 21 chr6 96634883 96635028 -52882009 - Lx3C LINE L1 -1 6975 6820 2 1322 3057 147 77 0 chr6 96635028 96635559 -52881478 + Lx4A LINE L1 6485 7056 -2 1 1322 519 300 15 0 chr6 96635686 96635816 -52881221 + ID_B1 SINE B4 93 224 0 2 1322 694 275 17 6 chr6 96635880 96636059 -52880978 + B3A SINE B2 2 182 -16 2 1322 290 132 0 19 chr6 96636063 96636117 -52880920 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 2 1322 722 175 7 0 chr6 96637350 96637493 -52879544 + GA-rich Low_complexity Low_complexity 3 146 0 2 1322 609 14 0 0 chr6 96637621 96637691 -52879346 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1322 399 73 0 0 chr6 96637691 96637745 -52879292 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1322 462 119 0 0 chr6 96637889 96637956 -52879081 + Lx5 LINE L1 3749 3815 -2062 2 1322 835 58 198 0 chr6 96637957 96638078 -52878959 + B1_Mus1 SINE Alu 2 146 -2 2 1322 261 0 0 0 chr6 96638078 96638107 -52878930 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1322 8522 30 0 1 chr6 96638127 96639190 -52877847 + L1Md_A LINE L1 5587 6582 0 2 1322 1468 129 43 22 chr6 96639192 96639365 -52877672 + Lx5 LINE L1 3799 3969 -1908 2 1322 459 0 0 0 chr6 96639365 96639416 -52877621 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1322 1468 129 43 22 chr6 96639416 96639519 -52877518 + Lx5 LINE L1 3970 4080 -1797 2 1322 1257 96 10 25 chr6 96639516 96639719 -52877318 + Lx5 LINE L1 5310 5509 -368 2 1322 4145 196 35 19 chr6 96639715 96640902 -52876135 + Lx5 LINE L1 5746 7049 -1 2 1322 589 280 149 18 chr6 96641162 96641384 -52875653 + MER2 DNA MER2_type 68 318 -27 2 1322 834 342 55 55 chr6 96642007 96642517 -52874520 - MLT2B4 LTR ERVL -4 552 43 2 1322 327 333 12 0 chr6 96642556 96642640 -52874397 - B1F1 SINE Alu -52 97 13 2 1322 227 303 0 128 chr6 96642568 96642670 -52874367 - MT2B2 LTR ERVL -344 240 152 2 1322 416 248 8 16 chr6 96642680 96642803 -52874234 + L1MA8 LINE L1 6163 6284 -7 2 1322 226 326 11 85 chr6 96643015 96643109 -52873928 + AluG_3 SINE Alu 148 218 -93 2 1322 2055 258 87 36 chr6 96643155 96643442 -52873595 - L1MA5 LINE L1 -154 6137 5833 2 1322 693 228 12 0 chr6 96643442 96643604 -52873433 + L1MA5 LINE L1 6131 6294 -6 2 1322 2055 258 79 31 chr6 96643604 96644276 -52872761 - L1MA7 LINE L1 -459 5832 5122 2 1322 581 100 11 0 chr6 96645247 96645337 -52871700 + (GA)n Simple_repeat Simple_repeat 2 92 0 2 1322 233 323 0 0 chr6 96645821 96645883 -52871154 - MIRc SINE MIR -145 123 62 2 1322 493 283 39 109 chr6 96646586 96646973 -52870064 + ORR1E LTR MaLR 3 379 0 2 1322 204 341 43 50 chr6 96647793 96647932 -52869105 + MIR SINE MIR 10 147 -115 2 1322 3534 10 5 0 chr6 96647969 96648363 -52868674 - MTA_Mm LTR MaLR 0 396 1 2 1322 238 376 69 39 chr6 96649562 96649692 -52867345 + MIRb SINE MIR 15 148 -120 2 1322 1293 327 34 23 chr6 96649947 96650365 -52866672 + Tigger7 DNA MER2_type 7 446 -104 2 1322 525 58 0 0 chr6 96650365 96650434 -52866603 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1322 1198 331 70 29 chr6 96650434 96650529 -52866508 + MER44B DNA MER2_type 447 540 -10 2 1322 252 0 0 0 chr6 96650541 96650569 -52866468 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2 1322 746 350 15 0 chr6 96650570 96650770 -52866267 + B4 SINE B4 88 290 -2 2 1322 885 275 45 0 chr6 96650937 96651137 -52865900 - B3 SINE B2 -6 210 2 2 1322 1329 89 0 19 chr6 96652672 96652877 -52864160 + L1Md_F2 LINE L1 6382 6582 0 2 1322 375 41 0 0 chr6 96653599 96653648 -52863389 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 2 1322 2834 28 2 198 chr6 96653767 96654252 -52862785 - RLTR10 LTR ERVK 0 390 1 2 1322 15660 29 9 1 chr6 96654254 96656183 -52860854 - RLTR10-int LTR ERVK -3 1984 41 2 1322 2769 39 2 198 chr6 96656193 96656678 -52860359 - RLTR10 LTR ERVK 0 390 1 2 1322 274 341 88 6 chr6 96657765 96657936 -52859101 + Charlie18a DNA MER1_type 33 217 -125 2 1322 356 233 216 42 chr6 96658301 96658515 -52858522 + ORR1E LTR MaLR 2 252 -107 2 1322 206 342 81 32 chr6 96659283 96659407 -52857630 + MIRb SINE MIR 10 139 -129 2 1322 22 0 0 0 chr6 96659790 96659812 -52857225 + AT_rich Low_complexity Low_complexity 1 22 0 2 1322 567 314 107 38 chr6 96660681 96660713 -52856324 - B4A SINE B4 -12 280 249 2 1322 1919 177 70 11 chr6 96660713 96661085 -52855952 + ORR1B1 LTR MaLR 1 394 0 2 1322 567 314 107 38 chr6 96661085 96661314 -52855723 - B4A SINE B4 -44 248 1 2 1322 202 146 0 24 chr6 96661367 96661409 -52855628 + T-rich Low_complexity Low_complexity 2 42 0 2 1322 185 200 0 0 chr6 96661430 96661465 -52855572 - MIRm SINE MIR -29 247 213 2 1322 7285 64 12 0 chr6 96662529 96663497 -52853540 - L1_Mus1 LINE L1 0 6567 5588 2 1322 4289 94 5 2 chr6 96663502 96664139 -52852898 + L1_Mus1 LINE L1 4947 5585 -298 2 1322 1133 75 0 0 chr6 96664346 96664492 -52852545 + B1_Mm SINE Alu 1 146 -1 2 1322 222 208 0 0 chr6 96664492 96664540 -52852497 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1322 846 0 0 0 chr6 96665308 96665402 -52851635 + (GAA)n Simple_repeat Simple_repeat 1 94 0 2 1322 358 224 69 114 chr6 96665522 96665653 -52851384 + MER5A1 DNA MER1_type 3 127 -39 2 1322 792 0 0 0 chr6 96665731 96665819 -52851218 + (GA)n Simple_repeat Simple_repeat 1 88 0 2 1322 315 0 0 0 chr6 96666178 96666213 -52850824 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1322 273 327 127 72 chr6 96666485 96666706 -52850331 + B4A SINE B4 2 234 -58 2 1322 21 0 0 0 chr6 96667509 96667530 -52849507 + AT_rich Low_complexity Low_complexity 1 21 0 2 1322 262 340 36 83 chr6 96667719 96667870 -52849167 - ID_B1 SINE B4 -69 223 70 2 1322 708 293 10 10 chr6 96668292 96668492 -52848545 + B3 SINE B2 2 201 -15 2 1322 522 43 0 0 chr6 96668521 96668590 -52848447 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 1322 276 313 12 0 chr6 96668844 96668927 -52848110 + RSINE1 SINE B4 82 165 0 2 1322 609 43 32 11 chr6 96668979 96669072 -52847965 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 2 1322 1402 49 11 19 chr6 96669126 96669501 -52847536 + (TAGA)n Simple_repeat Simple_repeat 1 371 0 2 1322 1039 217 34 11 chr6 96669604 96669870 -52847167 - Lx4B LINE L1 -17 7041 6770 2 1322 532 312 84 7 chr6 96670980 96671171 -52845866 - B3A SINE B2 -10 206 2 2 1322 495 87 0 0 chr6 96671928 96671997 -52845040 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1322 268 373 103 32 chr6 96672021 96672438 -52844599 - L2a LINE L2 -192 3234 2782 2 1322 239 351 0 13 chr6 96672444 96672519 -52844518 - L2b LINE L2 -6 3369 3296 2 1322 868 271 99 37 chr6 96673478 96673589 -52843448 + MLT1A LTR MaLR 13 123 -251 2 1322 1258 232 92 29 chr6 96673589 96673935 -52843102 - ORR1D2 LTR MaLR 0 370 3 2 1322 868 271 99 37 chr6 96673935 96674145 -52842892 + MLT1A LTR MaLR 124 354 -20 2 1322 246 346 61 61 chr6 96674261 96674458 -52842579 + MLT1A LTR MaLR 309 505 0 2 1322 331 320 19 39 chr6 96675004 96675160 -52841877 + MER5A1 DNA MER1_type 14 166 0 2 1322 304 338 60 20 chr6 96675687 96675838 -52841199 - MIR SINE MIR -1 261 105 2 1322 251 336 66 23 chr6 96676768 96677027 -52840010 - Charlie4a DNA MER1_type -238 270 1 2 1322 702 173 0 0 chr6 96677331 96677464 -52839573 + (TA)n Simple_repeat Simple_repeat 1 133 0 2 1322 23 0 0 0 chr6 96677544 96677567 -52839470 + AT_rich Low_complexity Low_complexity 1 23 0 2 1322 24 0 0 0 chr6 96678702 96678726 -52838311 + AT_rich Low_complexity Low_complexity 1 24 0 2 1322 221 233 0 0 chr6 96678726 96678769 -52838268 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 2 1322 513 0 0 0 chr6 96678890 96678947 -52838090 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 2 1322 752 296 28 5 chr6 96679486 96679703 -52837334 - ID_B1 SINE B4 -2 222 1 2 1322 204 325 165 8 chr6 96679703 96679830 -52837207 + MIRb SINE MIR 111 257 -11 2 1322 504 332 76 29 chr6 96680951 96681227 -52835810 + B4A SINE B4 4 292 0 2 1322 909 241 36 95 chr6 96681374 96681878 -52835159 + RLTR11B LTR ERVK 1 494 -34 2 1322 265 375 119 61 chr6 96682221 96682482 -52834555 + LTR16A LTR ERVL 97 372 -79 2 1322 331 287 79 0 chr6 96682832 96682933 -52834104 - PB1D10 SINE Alu -8 109 1 2 1322 561 333 147 23 chr6 96682984 96683672 -52833365 - L2 LINE L2 -1182 2237 1465 2 1322 863 274 14 0 chr6 96684459 96684671 -52832366 + B3 SINE B2 2 216 0 2 1322 215 274 0 16 chr6 96684691 96684754 -52832283 + MIR SINE MIR 137 198 -64 2 1322 632 320 27 51 chr6 96684850 96685146 -52831891 - B4 SINE B4 -2 290 2 2 1322 604 308 8 0 chr6 96685281 96685414 -52831623 + B1_Mur1 SINE Alu 2 135 -14 2 1322 612 0 0 0 chr6 96685414 96685482 -52831555 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 2 1322 525 289 77 50 chr6 96685505 96685815 -52831222 - MLT1C LTR MaLR -8 382 73 2 1322 1006 189 124 0 chr6 96685815 96686016 -52831021 - URR1A DNA MER1_type 0 226 1 2 1322 525 280 76 38 chr6 96686016 96686084 -52830953 - MLT1C LTR MaLR -395 72 6 2 1322 356 291 99 50 chr6 96686167 96686348 -52830689 + Charlie10 DNA MER1_type 27 216 -2606 2 1322 367 221 8 8 chr6 96686942 96687065 -52829972 + (TA)n Simple_repeat Simple_repeat 1 123 0 2 1322 525 259 30 15 chr6 96687073 96687206 -52829831 + B3 SINE B2 2 136 -80 2 1322 408 40 0 0 chr6 96687229 96687279 -52829758 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 2 1322 645 49 0 0 chr6 96687285 96687366 -52829671 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 1322 668 295 72 52 chr6 96687866 96688116 -52828921 + MLT1F LTR MaLR 29 283 -265 2 1322 221 291 0 18 chr6 96688308 96688364 -52828673 - ID SINE ID -168 56 2 2 1322 1072 94 0 0 chr6 96688845 96688983 -52828054 + B1_Mus1 SINE Alu 1 138 -10 2 1322 423 0 0 0 chr6 96688983 96689030 -52828007 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 1322 314 302 85 31 chr6 96689692 96689822 -52827215 + MER5A DNA MER1_type 3 139 -50 2 1322 489 217 146 18 chr6 96689938 96690103 -52826934 - B3 SINE B2 -22 194 1 2 1322 675 298 48 84 chr6 96690116 96690343 -52826694 - B4 SINE B4 -69 223 5 2 1322 294 325 0 13 chr6 96690326 96690404 -52826633 + MER5A DNA MER1_type 111 187 -2 2 1322 348 83 0 0 chr6 96690554 96690602 -52826435 + (TTGG)n Simple_repeat Simple_repeat 1 48 0 2 1322 408 279 15 18 chr6 96690602 96690725 -52826312 - PB1D10 SINE Alu -2 146 14 2 1322 215 379 0 0 chr6 96690980 96691038 -52825999 + MIRb SINE MIR 41 98 -170 2 1322 21 0 0 0 chr6 96691134 96691155 -52825882 + AT_rich Low_complexity Low_complexity 1 21 0 2 1322 609 277 45 30 chr6 96691334 96691535 -52825502 + B3 SINE B2 1 204 -12 3 1322 344 313 10 0 chr6 96692227 96692326 -52824711 + MIR SINE MIR 45 144 -118 3 1322 1051 275 51 15 chr6 96692440 96692713 -52824324 + B4A SINE B4 8 290 -2 3 1322 301 310 69 56 chr6 96692890 96693075 -52823962 - MIR SINE MIR -82 180 2 3 1322 5240 81 10 0 chr6 96694409 96695103 -52821934 - Lx3_Mus LINE L1 0 7009 6309 3 1322 516 341 151 14 chr6 96695424 96695850 -52821187 + MLT1D LTR MaLR 18 501 -4 3 1322 587 286 22 58 chr6 96695932 96696158 -52820879 - MER20 DNA MER1_type -1 218 1 3 1322 286 244 51 25 chr6 96697137 96697255 -52819782 + Lx7 LINE L1 7576 7696 0 3 1322 1418 191 50 50 chr6 96698004 96698307 -52818730 - ORR1D2 LTR MaLR -3 367 65 3 1322 6386 69 21 2 chr6 96698696 96699586 -52817451 + L1_Mus3 LINE L1 5732 6638 0 3 1322 329 93 19 0 chr6 96699711 96699765 -52817272 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 3 1322 455 366 45 22 chr6 96699912 96700091 -52816946 - MLT1K LTR MaLR -393 202 20 3 1322 672 327 36 74 chr6 96700106 96700326 -52816711 - MLT1B LTR MaLR -1 389 171 3 1322 449 296 30 61 chr6 96700326 96700524 -52816513 + B3A SINE B2 2 193 -5 3 1322 672 327 36 74 chr6 96700524 96700640 -52816397 - MLT1B LTR MaLR -220 170 66 3 1322 652 256 44 84 chr6 96700862 96701088 -52815949 - MER20 DNA MER1_type -1 218 2 3 1322 316 298 96 106 chr6 96701543 96701742 -52815295 + B3A SINE B2 2 198 0 3 1322 380 384 80 23 chr6 96702173 96702281 -52814756 - L2 LINE L2 -1400 2019 1905 3 1322 1080 157 108 0 chr6 96702281 96702485 -52814552 - URR1A DNA MER1_type 0 226 1 3 1322 380 384 80 23 chr6 96702485 96702888 -52814149 - L2 LINE L2 -1515 1904 1480 3 1322 435 19 0 0 chr6 96703023 96703075 -52813962 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1322 528 346 53 5 chr6 96706828 96707037 -52810000 + MER20 DNA MER1_type 1 219 0 3 1322 395 311 143 81 chr6 96709379 96709652 -52807385 + B4 SINE B4 2 291 -1 3 1322 189 0 0 0 chr6 96709682 96709703 -52807334 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1322 969 149 0 0 chr6 96709828 96710050 -52806987 + (CA)n Simple_repeat Simple_repeat 1 222 0 3 1322 351 0 0 0 chr6 96710232 96710271 -52806766 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1322 556 299 30 63 chr6 96710432 96710732 -52806305 + B4A SINE B4 3 292 0 3 1322 591 283 104 5 chr6 96710816 96711036 -52806001 + MER2 DNA MER2_type 104 345 0 3 1322 22 0 0 0 chr6 96711506 96711528 -52805509 + AT_rich Low_complexity Low_complexity 1 22 0 3 1322 1977 127 35 13 chr6 96711577 96711888 -52805149 + ORR1A3 LTR MaLR 1 318 -8 3 1322 35339 26 1 7 chr6 96712076 96717261 -52799776 + L1Md_T LINE L1 440 5586 -297 3 1322 8416 32 1 0 chr6 96717261 96718253 -52798784 + L1Md_T LINE L1 5587 6579 -3 3 1322 22 0 0 0 chr6 96718253 96718275 -52798762 + AT_rich Low_complexity Low_complexity 1 22 0 3 1322 24 32 0 0 chr6 96718411 96718442 -52798595 + AT_rich Low_complexity Low_complexity 1 31 0 3 1322 2924 182 4 2 chr6 96718457 96718973 -52798064 - Lx5 LINE L1 -362 6688 6172 3 1322 1887 212 29 8 chr6 96718962 96719343 -52797694 + Lx5 LINE L1 6514 6902 -148 3 1322 504 211 18 27 chr6 96719343 96719455 -52797582 + B3 SINE B2 46 156 -60 3 1322 393 58 0 0 chr6 96719544 96719596 -52797441 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1322 561 140 80 0 chr6 96719664 96719814 -52797223 + Lx9 LINE L1 7482 7643 -1 3 1322 541 276 127 65 chr6 96720315 96720575 -52796462 - B4 SINE B4 -16 276 1 3 1322 221 279 14 14 chr6 96720827 96720896 -52796141 + (TATG)n Simple_repeat Simple_repeat 4 72 0 3 1322 765 255 52 97 chr6 96721175 96721600 -52795437 - L1MA9 LINE L1 -223 6089 5684 3 1322 410 266 76 27 chr6 96721645 96721869 -52795168 - L1MA9 LINE L1 -2361 3779 3545 3 1322 1292 269 41 44 chr6 96721914 96722601 -52794436 + L1M3 LINE L1 4340 5134 -1006 3 1322 562 295 80 42 chr6 96722856 96723167 -52793870 - L1MA9 LINE L1 -2903 3243 2921 3 1322 589 302 46 19 chr6 96723192 96723667 -52793370 - L1M5 LINE L1 -2129 4017 3543 3 1322 216 154 0 0 chr6 96723701 96723753 -52793284 + A-rich Low_complexity Low_complexity 1 52 0 3 1322 24 32 0 0 chr6 96723837 96723868 -52793169 + AT_rich Low_complexity Low_complexity 1 31 0 3 1322 225 94 0 0 chr6 96724196 96724228 -52792809 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 3 1322 8118 2 0 0 chr6 96724607 96725501 -52791536 + L1Md_A LINE L1 5689 6582 0 3 1322 542 304 12 19 chr6 96725674 96725835 -52791202 + RSINE1 SINE B4 4 163 -2 3 1322 5211 91 13 2 chr6 96725956 96726741 -52790296 + L1Md_A LINE L1 411 1203 -5521 3 1322 8838 36 0 6 chr6 96726708 96727949 -52789088 + L1Md_A LINE L1 1129 2362 -3521 3 165 34795 33 2 8 chr6 96727951 96733141 -52783896 + L1Md_A LINE L1 422 5575 -308 3 1323 232 361 28 0 chr6 96733141 96733152 -52783885 + MER3 DNA MER1_type 13 23 -186 3 1323 7345 52 49 3 chr6 96733152 96734104 -52782933 + L1Md_F2 LINE L1 5587 6582 0 3 1323 305 300 127 24 chr6 96734104 96734392 -52782645 + MER33 DNA MER1_type 3 296 -28 3 1323 589 254 16 1 chr6 96735232 96735410 -52781627 - L1_Mur3 LINE L1 -620 5824 5651 3 1323 279 356 26 0 chr6 96735452 96735567 -52781470 + MIR SINE MIR 1 118 -144 3 1323 792 244 97 71 chr6 96735687 96735806 -52781231 - L1MA6 LINE L1 0 6300 6188 3 1323 3388 40 0 2 chr6 96735806 96736203 -52780834 - MTA_Mm LTR MaLR 0 396 1 3 1323 792 244 97 71 chr6 96736203 96736578 -52780459 - L1MA6 LINE L1 -113 6187 5793 3 1323 1278 83 0 0 chr6 96736874 96737118 -52779919 + (CA)n Simple_repeat Simple_repeat 1 244 0 3 1323 337 206 137 32 chr6 96737139 96737234 -52779803 - Lx7 LINE L1 -389 7307 7203 3 1323 33789 35 0 0 chr6 96737246 96742672 -52774365 + L1Md_T LINE L1 66 5589 -297 3 1323 8963 8 0 0 chr6 96742672 96743668 -52773369 + L1Md_T LINE L1 5590 6585 0 3 1323 323 322 18 49 chr6 96743670 96743833 -52773204 - Lx7 LINE L1 -501 7195 7038 3 1323 2844 96 5 2 chr6 96745750 96746159 -52770878 - L1_Mus4 LINE L1 -2 6634 6225 3 1323 360 0 0 0 chr6 96746695 96746735 -52770302 + (CAT)n Simple_repeat Simple_repeat 2 41 0 3 1323 188 206 40 105 chr6 96747473 96747549 -52769488 - L4 LINE RTE -1667 362 292 3 1323 219 231 27 63 chr6 96748221 96748332 -52768705 + (CATA)n Simple_repeat Simple_repeat 4 110 0 3 1323 196 174 27 61 chr6 96748344 96748491 -52768546 + (CATA)n Simple_repeat Simple_repeat 1 142 0 3 1323 347 297 29 31 chr6 96750593 96750796 -52766241 + Charlie5 DNA MER1_type 1 204 -5 3 1323 486 364 88 36 chr6 96751572 96752104 -52764933 - MLT1E1 LTR MaLR -25 629 67 3 1323 369 0 0 0 chr6 96752190 96752231 -52764806 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1323 321 315 0 53 chr6 96752390 96752484 -52764553 - MLT1E1 LTR MaLR -591 89 1 3 1323 1245 67 0 0 chr6 96752840 96753004 -52764033 + (GA)n Simple_repeat Simple_repeat 1 164 0 3 1323 470 317 6 24 chr6 96753005 96753173 -52763864 + MIRb SINE MIR 103 267 -1 3 1323 281 224 35 0 chr6 96754291 96754349 -52762688 + MER58B DNA MER1_type 260 319 -22 3 1323 1045 278 95 39 chr6 96754499 96754956 -52762081 + L1M4 LINE L1 2453 2951 -3195 3 1323 498 46 0 0 chr6 96754956 96755021 -52762016 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1323 1045 278 95 39 chr6 96755021 96755311 -52761726 + L1M4 LINE L1 2952 3243 -2903 3 1323 763 148 284 6 chr6 96755311 96755487 -52761550 - URR1B DNA MER1_type 0 225 1 3 1323 1045 278 95 39 chr6 96755487 96755528 -52761509 + L1M4 LINE L1 3244 3286 -2860 3 1323 652 284 55 7 chr6 96756068 96756376 -52760661 + L1M4 LINE L1 5079 5401 -745 3 1323 236 290 31 31 chr6 96756487 96756583 -52760454 + RMER15 LTR ERVL 470 565 -10 3 1323 507 263 90 13 chr6 96756593 96756894 -52760143 + L1MD LINE L1 3564 3887 -2259 3 1323 468 149 172 0 chr6 96756930 96757016 -52760021 - ORR1B2 LTR MaLR 0 367 267 3 1323 3045 144 79 112 chr6 96757016 96757741 -52759296 - RMER6A LTR ERVK 0 756 56 3 1323 1591 193 4 7 chr6 96757757 96758029 -52759008 - ORR1B2 LTR MaLR -96 271 1 3 1323 343 280 135 18 chr6 96758029 96758356 -52758681 + L1MD LINE L1 4580 4944 -1202 3 1323 227 114 0 0 chr6 96758602 96758637 -52758400 + L1MD LINE L1 5259 5293 -853 3 1323 864 171 57 26 chr6 96758685 96758877 -52758160 + Lx9 LINE L1 5786 5983 -1661 3 1323 322 261 94 47 chr6 96759105 96759254 -52757783 + L1MC4a LINE L1 7725 7880 -2 3 1323 760 285 19 84 chr6 96759909 96760219 -52756818 + B4A SINE B4 3 292 0 3 1323 185 65 32 0 chr6 96760970 96761001 -52756036 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 3 1323 380 354 57 61 chr6 96761599 96761846 -52755191 - MER74B LTR ERVL -57 565 320 3 1323 817 304 83 4 chr6 96761827 96762091 -52754946 - MER82 DNA MER2_type -358 295 11 3 1323 25 0 0 0 chr6 96762155 96762180 -52754857 + AT_rich Low_complexity Low_complexity 1 25 0 3 1323 1677 200 103 72 chr6 96762192 96762678 -52754359 - RLTR20B3 LTR ERVK -56 521 21 3 1323 780 348 93 19 chr6 96762923 96763515 -52753522 - L1MDb LINE L1 -5014 1395 760 3 1323 598 268 6 24 chr6 96763920 96764088 -52752949 + RSINE1 SINE B4 1 165 0 3 1323 408 155 0 0 chr6 96764090 96764161 -52752876 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1323 21 36 0 0 chr6 96764167 96764195 -52752842 + AT_rich Low_complexity Low_complexity 1 28 0 3 1323 462 271 154 19 chr6 96765081 96765348 -52751689 - Lx9 LINE L1 -2 7642 7340 3 1323 1505 268 14 35 chr6 96765629 96766120 -52750917 - Lx9 LINE L1 -427 7217 6737 3 1323 2629 56 17 23 chr6 96766175 96766522 -52750515 - IAPLTR4 LTR ERVK 0 345 1 3 1323 466 121 0 0 chr6 96766784 96766850 -52750187 + B1_Mur3 SINE Alu 77 142 -7 3 1323 221 170 21 0 chr6 96766850 96766877 -52750160 + (TAGA)n Simple_repeat Simple_repeat 1 27 0 3 1323 825 65 0 0 chr6 96766877 96766985 -52750052 + (GAA)n Simple_repeat Simple_repeat 1 108 0 3 1323 221 170 21 0 chr6 96766985 96767004 -52750033 + (TAGA)n Simple_repeat Simple_repeat 4 22 0 3 1323 3868 284 102 79 chr6 96767078 96767283 -52749754 - L1_Mur3 LINE L1 -331 5549 5316 3 1323 180 0 0 0 chr6 96767283 96767303 -52749734 + (TTTTA)n Simple_repeat Simple_repeat 5 24 0 3 1323 3868 284 102 79 chr6 96767303 96768978 -52748059 - L1_Mur3 LINE L1 -565 5315 3555 3 1323 297 0 0 0 chr6 96768978 96769011 -52748026 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1323 3868 284 102 79 chr6 96769011 96770206 -52746831 - L1_Mur3 LINE L1 -2326 3554 2401 3 1323 1274 229 110 11 chr6 96770243 96770697 -52746340 - L1_Rod LINE L1 -3820 2027 1529 3 1323 3157 61 0 10 chr6 96770697 96771097 -52745940 + MTA_Mm LTR MaLR 1 396 0 3 1323 985 79 7 7 chr6 96771097 96771237 -52745800 + MTA_Mm-int LTR MaLR 1 140 -958 3 1323 1397 12 0 0 chr6 96771237 96771401 -52745636 - L1_Mm LINE L1 -366 5517 5354 3 1323 1879 14 27 5 chr6 96771401 96771625 -52745412 + L1Md_F3 LINE L1 6344 6572 -12 3 1323 6932 68 29 3 chr6 96771673 96772641 -52744396 + MTA_Mm-int LTR MaLR 106 1098 0 3 1323 3223 48 0 10 chr6 96772641 96773041 -52743996 + MTA_Mm LTR MaLR 1 396 0 3 1323 917 262 53 0 chr6 96773052 96773126 -52743911 - L1_Rod LINE L1 -4327 1520 1447 3 1323 240 35 0 0 chr6 96773126 96773155 -52743882 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1323 1243 237 62 6 chr6 96773155 96773638 -52743399 - L1_Rod LINE L1 -4401 1446 927 3 1323 715 296 95 9 chr6 96774816 96774871 -52742166 - B4A SINE B4 -8 284 227 4 1323 414 100 0 0 chr6 96774871 96774931 -52742106 + (CAT)n Simple_repeat Simple_repeat 1 60 0 4 1323 778 280 57 43 chr6 96774931 96775282 -52741755 - B4 SINE B4 -1 291 46 4 1323 519 17 0 0 chr6 96775334 96775394 -52741643 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1323 304 279 0 37 chr6 96776108 96776190 -52740847 - B4 SINE B4 -181 111 33 4 1323 287 270 0 0 chr6 96776322 96776411 -52740626 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 1323 537 16 0 0 chr6 96776419 96776481 -52740556 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1323 195 269 47 93 chr6 96776825 96776911 -52740126 + L2a LINE L2 3320 3401 -25 4 1323 1240 150 49 45 chr6 96777177 96777401 -52739636 - URR1B DNA MER1_type 0 225 1 4 1323 205 27 81 0 chr6 96777648 96777685 -52739352 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4 1323 2596 61 59 33 chr6 96777895 96778232 -52738805 - ORR1A1 LTR MaLR 0 346 1 4 1323 2880 173 4 6 chr6 96778590 96779061 -52737976 + Lx2B LINE L1 6526 6995 -5 4 1323 514 352 32 9 chr6 96779196 96779414 -52737623 - MER58A DNA MER1_type 0 224 2 4 1323 257 308 66 22 chr6 96780187 96780323 -52736714 + MIRb SINE MIR 83 224 -44 4 1323 230 304 69 62 chr6 96783359 96783503 -52733534 - Cheshire DNA MER1_type -2189 231 87 4 1323 804 236 0 0 chr6 96783547 96783695 -52733342 - B1_Mur2 SINE Alu 0 149 2 4 1323 1800 175 122 5 chr6 96784717 96785085 -52731952 - MTD LTR MaLR -8 411 1 4 1323 842 264 54 10 chr6 96785359 96785562 -52731475 - B3 SINE B2 -3 213 2 4 1323 507 151 0 0 chr6 96785747 96785840 -52731197 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 1323 4485 286 81 19 chr6 96786107 96788107 -52728930 - L1_Mur3 LINE L1 -22 5858 3737 4 1323 378 0 0 0 chr6 96788124 96788166 -52728871 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1323 222 171 0 0 chr6 96788166 96788207 -52728830 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1323 3051 233 40 48 chr6 96788209 96788796 -52728241 - L1_Rod LINE L1 -2620 3227 2649 4 1323 4390 4 0 0 chr6 96788796 96789253 -52727784 - L1Md_A LINE L1 0 6582 6126 4 1323 3051 233 40 48 chr6 96789253 96789657 -52727380 - L1_Rod LINE L1 -3199 2648 2244 4 1323 264 276 39 13 chr6 96789688 96789765 -52727272 + MER5A DNA MER1_type 79 157 -32 4 1323 25 31 0 0 chr6 96789959 96789991 -52727046 + AT_rich Low_complexity Low_complexity 1 32 0 4 1323 339 261 125 44 chr6 96790433 96790569 -52726468 - MER20 DNA MER1_type -49 170 24 4 1323 548 289 19 19 chr6 96792053 96792215 -52724822 - MER2 DNA MER2_type -12 333 173 4 1323 950 196 14 91 chr6 96792223 96792442 -52724595 - B3 SINE B2 -7 209 8 4 1323 375 226 97 70 chr6 96792456 96792570 -52724467 - MER2 DNA MER2_type -194 151 35 4 1323 756 172 8 0 chr6 96794026 96794148 -52722889 + B2_Mm2 SINE B2 7 129 -66 4 1323 203 161 0 0 chr6 96794200 96794231 -52722806 + (CATA)n Simple_repeat Simple_repeat 3 33 0 4 1323 196 281 101 64 chr6 96794276 96794426 -52722611 + MIRc SINE MIR 20 175 -93 4 1323 506 295 100 47 chr6 96795250 96795659 -52721378 - L1MA9 LINE L1 -222 6090 5660 4 1323 604 226 194 36 chr6 96795745 96796046 -52720991 - L1MA9 LINE L1 -626 5665 5300 4 1323 532 316 69 49 chr6 96796205 96796511 -52720526 + RLTR26 LTR ERVK 169 480 -162 4 1323 441 309 65 0 chr6 96796727 96796866 -52720171 + B3 SINE B2 2 149 -67 4 1323 408 88 0 0 chr6 96796870 96796927 -52720110 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1323 400 289 89 8 chr6 96796978 96797236 -52719801 - L1MA9 LINE L1 -902 5238 4960 4 1323 824 259 176 27 chr6 96797327 96797879 -52719158 - L1MA9 LINE L1 -1154 4986 4353 4 1323 1127 286 117 21 chr6 96797969 96798583 -52718454 + L1M3 LINE L1 3578 4250 -1890 4 1323 1017 211 48 5 chr6 96799581 96799790 -52717247 + Lx6 LINE L1 7087 7304 -156 4 1323 1299 82 39 0 chr6 96799790 96799972 -52717065 - B2_Mm2 SINE B2 -1 194 6 4 1323 6814 109 55 15 chr6 96800003 96800023 -52717014 - Lx LINE L1 0 6654 6639 4 1323 195 42 0 0 chr6 96800030 96800054 -52716983 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1323 1195 82 0 0 chr6 96800054 96800192 -52716845 - B1_Mus2 SINE Alu -7 140 3 4 1323 6814 112 52 13 chr6 96800192 96801427 -52715610 - Lx LINE L1 -16 6638 5357 4 1323 551 163 79 36 chr6 96801419 96801559 -52715478 + Lx6 LINE L1 7313 7458 -2 4 1323 370 336 17 25 chr6 96801712 96801831 -52715206 + RSINE1 SINE B4 3 120 -45 4 1323 287 196 0 0 chr6 96801831 96801882 -52715155 + Lx5 LINE L1 6479 6529 -521 4 1323 780 273 36 33 chr6 96801910 96802243 -52714794 - L1M2 LINE L1 -654 5646 5313 4 1323 440 283 8 70 chr6 96802256 96802385 -52714652 - RSINE1 SINE B4 -44 121 1 4 1323 188 130 22 0 chr6 96802389 96802435 -52714602 + T-rich Low_complexity Low_complexity 5 51 0 4 1323 1001 161 6 3 chr6 96803618 96803947 -52713090 + (TA)n Simple_repeat Simple_repeat 1 330 0 4 1323 2275 303 67 24 chr6 96803964 96804851 -52712186 - Lx8 LINE L1 -216 7257 6333 4 1323 924 99 130 0 chr6 96805081 96805212 -52711825 + B1_Mus1 SINE Alu 1 148 0 4 1323 312 264 81 106 chr6 96805397 96805520 -52711517 - MER20 DNA MER1_type 0 219 100 4 1323 226 324 164 18 chr6 96806177 96806287 -52710750 + L2b LINE L2 3244 3369 -6 4 1323 304 175 18 0 chr6 96809012 96809069 -52707968 + 4.5SRNA scRNA scRNA 1 58 -36 4 1323 21 0 0 0 chr6 96809096 96809117 -52707920 + AT_rich Low_complexity Low_complexity 1 21 0 4 1323 7699 115 3 28 chr6 96809120 96810776 -52706261 - L1_Mus2 LINE L1 -2 6564 4960 4 1323 5150 94 16 6 chr6 96810766 96811496 -52705541 + L1_Mus2 LINE L1 4215 4952 -931 4 1323 963 260 75 31 chr6 96811523 96812000 -52705037 - Lx8 LINE L1 -31 7442 6966 4 1323 731 237 117 17 chr6 96812901 96813081 -52703956 + B3 SINE B2 2 199 -17 4 1323 339 302 87 43 chr6 96813273 96813481 -52703556 + MER2 DNA MER2_type 89 305 -40 4 1323 265 308 82 71 chr6 96814092 96814274 -52702763 + MLT1E2 LTR MaLR 3 186 -441 4 1323 436 287 168 68 chr6 96814279 96814571 -52702466 + MLT1E2 LTR MaLR 303 623 -4 4 1323 678 308 170 23 chr6 96814637 96814926 -52702111 - L1MC4 LINE L1 -178 7864 7522 4 1323 180 97 0 0 chr6 96814926 96814957 -52702080 + (TTG)n Simple_repeat Simple_repeat 2 32 0 4 1323 396 0 0 0 chr6 96814967 96815011 -52702026 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1323 678 308 170 23 chr6 96815011 96815309 -52701728 - L1MC4 LINE L1 -535 7507 7179 4 1323 283 292 114 46 chr6 96815330 96815567 -52701470 - L1MC4 LINE L1 -1046 6996 6744 4 1323 293 140 18 0 chr6 96815919 96815976 -52701061 + C-rich Low_complexity Low_complexity 5 62 0 4 1323 221 300 50 0 chr6 96816612 96816692 -52700345 - MIRb SINE MIR -34 234 151 4 1323 488 339 142 4 chr6 96817180 96817441 -52699596 - MLT2B4 LTR ERVL -257 299 3 4 1323 315 0 0 0 chr6 96819110 96819145 -52697892 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1323 351 0 0 0 chr6 96819145 96819183 -52697854 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1323 420 55 0 0 chr6 96819592 96819647 -52697390 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1323 1997 103 0 67 chr6 96819649 96819962 -52697075 + ORR1A4 LTR MaLR 30 321 -8 4 1323 186 43 0 0 chr6 96819966 96819989 -52697048 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1323 285 100 0 0 chr6 96819989 96820039 -52696998 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1323 330 320 226 24 chr6 96820039 96820503 -52696534 - L2 LINE L2 -1002 2417 1860 4 1323 544 266 92 145 chr6 96821717 96822117 -52694920 + MLT1B LTR MaLR 11 389 -1 4 1323 282 307 132 57 chr6 96822708 96822867 -52694170 + MIRb SINE MIR 71 241 -27 4 1323 574 325 88 14 chr6 96823534 96823830 -52693207 + RMER15 LTR ERVL 257 574 -1 4 1323 4103 94 46 12 chr6 96823920 96824644 -52692393 - RLTR13D4 LTR ERVK 0 1033 1 4 1323 1463 335 71 59 chr6 96824672 96825465 -52691572 + RMER15-int LTR ERVL 151 952 -4047 4 1323 587 262 54 18 chr6 96825515 96825682 -52691355 + RMER15-int LTR ERVL 1121 1293 -3706 4 1323 1754 68 13 0 chr6 96825685 96825921 -52691116 - L1Md_F2 LINE L1 -668 5215 4977 4 1323 5533 45 0 7 chr6 96825922 96826724 -52690313 + L1Md_F2 LINE L1 5221 6018 -564 4 1323 3452 196 47 114 chr6 96826716 96826902 -52690135 + L1Md_F3 LINE L1 204 401 -6323 4 1323 1699 26 10 10 chr6 96826902 96827095 -52689942 + B2_Mm1a SINE B2 1 193 0 4 1323 35923 69 9 19 chr6 96827095 96832365 -52684672 + L1Md_F3 LINE L1 402 5585 -298 4 1323 8475 44 16 0 chr6 96832366 96833348 -52683689 + L1Md_F3 LINE L1 5587 6584 0 4 1323 4311 75 5 0 chr6 96833358 96833919 -52683118 + L1Md_F2 LINE L1 6005 6568 -14 4 1323 420 345 0 0 chr6 96833953 96834092 -52682945 + RMER15-int LTR ERVL 1315 1453 -3546 4 1323 1796 181 69 3 chr6 96834106 96834274 -52682763 + ORR1C2 LTR MaLR 1 189 -195 4 1323 294 50 0 0 chr6 96834274 96834314 -52682723 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1323 1796 181 69 3 chr6 96834314 96834494 -52682543 + ORR1C2 LTR MaLR 190 371 -13 4 1323 495 310 70 0 chr6 96834498 96834685 -52682352 + RMER15-int LTR ERVL 1502 1701 -3298 4 1323 354 314 41 87 chr6 96834711 96835147 -52681890 + L1M2 LINE L1 2410 2825 -3318 4 1323 418 331 20 72 chr6 96835159 96835312 -52681725 + B4A SINE B4 20 164 -128 4 1323 302 269 85 0 chr6 96835505 96835646 -52681391 + L1M2 LINE L1 2830 2982 -3161 4 1323 468 264 186 0 chr6 96835647 96835776 -52681261 + ORR1E LTR MaLR 1 153 -206 4 1323 712 261 142 11 chr6 96835783 96835973 -52681064 - ID_B1 SINE B4 -1 223 9 4 1323 369 0 0 0 chr6 96836032 96836073 -52680964 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1323 2024 298 88 35 chr6 96836079 96837586 -52679451 + L1M2 LINE L1 3423 5009 -1134 4 1323 762 261 22 22 chr6 96837642 96837822 -52679215 + B3 SINE B2 37 216 0 4 1323 350 273 43 43 chr6 96837846 96838030 -52679007 + L1M2 LINE L1 5077 5260 -883 4 1323 881 291 55 42 chr6 96838064 96838196 -52678841 + L1M2 LINE L1 5334 5469 -831 4 1323 753 253 74 110 chr6 96838196 96838587 -52678450 + MTE2a LTR MaLR 1 377 -2 4 1323 881 291 55 42 chr6 96838587 96838928 -52678109 + L1M2 LINE L1 5470 5813 -487 4 1323 2486 149 14 24 chr6 96839064 96839489 -52677548 - MTC LTR MaLR 0 421 1 4 1323 251 262 98 0 chr6 96839609 96839670 -52677367 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 4 1323 275 203 0 14 chr6 96839674 96839744 -52677293 + GA-rich Low_complexity Low_complexity 4 72 0 4 1323 342 0 0 0 chr6 96840603 96840641 -52676396 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1323 351 0 0 0 chr6 96840641 96840679 -52676358 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1323 530 297 47 0 chr6 96841957 96842105 -52674932 - RSINE1 SINE B4 -8 157 3 4 1323 309 333 139 0 chr6 96842402 96842510 -52674527 - Tigger5 DNA MER2_type -2237 169 47 4 1323 3140 104 13 13 chr6 96842583 96843117 -52673920 + MusHAL1 LINE L1 781 1314 -1398 4 1323 15685 61 1 0 chr6 96843116 96845211 -52671826 + L1Md_F2 LINE L1 3490 5586 -297 4 1323 8136 48 0 4 chr6 96845211 96846211 -52670826 + L1Md_F2 LINE L1 5587 6582 0 4 1323 16412 147 23 36 chr6 96846212 96850435 -52666602 + Lx LINE L1 2503 6653 -1 4 1323 1987 163 115 45 chr6 96850563 96850956 -52666081 + Lx2B LINE L1 6523 6952 -48 4 1323 3227 56 5 0 chr6 96850956 96851349 -52665688 + MTA_Mm LTR MaLR 2 396 0 4 1323 1987 163 115 45 chr6 96851349 96851398 -52665639 + Lx2B LINE L1 6953 6996 -4 4 1323 25 41 0 20 chr6 96851398 96851423 -52665614 + AT_rich Low_complexity Low_complexity 1 25 0 5 1323 1235 41 0 0 chr6 96851423 96851569 -52665468 + B1_Mm SINE Alu 2 147 0 5 1323 25 41 0 20 chr6 96851569 96851593 -52665444 + AT_rich Low_complexity Low_complexity 1 24 0 5 1323 422 221 0 0 chr6 96852129 96852197 -52664840 + B4A SINE B4 225 292 0 5 1323 227 270 25 63 chr6 96852366 96852445 -52664592 - B4 SINE B4 -206 86 11 5 1323 243 88 0 0 chr6 96853116 96853150 -52663887 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1323 513 310 52 52 chr6 96853532 96853743 -52663294 + Tigger5 DNA MER2_type 7 217 -2189 5 1323 274 333 0 0 chr6 96853890 96853962 -52663075 + Tigger5 DNA MER2_type 2321 2392 -14 5 1323 26 74 0 0 chr6 96854378 96854432 -52662605 + AT_rich Low_complexity Low_complexity 1 54 0 5 1323 385 305 141 0 chr6 96854594 96854843 -52662194 + L1MEf LINE L1 30 313 -6110 5 1323 548 272 28 49 chr6 96855678 96855821 -52661216 + B1_Mur1 SINE Alu 3 142 -7 5 1323 369 43 0 0 chr6 96855915 96855962 -52661075 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1323 596 340 37 118 chr6 96855991 96856288 -52660749 - B4 SINE B4 -18 274 2 5 1323 838 229 22 0 chr6 96856638 96856817 -52660220 + B3A SINE B2 3 185 -13 5 1323 28 0 0 0 chr6 96856825 96856853 -52660184 + AT_rich Low_complexity Low_complexity 1 28 0 5 1323 270 312 73 28 chr6 96856884 96857420 -52659617 + L1MD LINE L1 2366 2929 -3217 5 1323 258 309 90 26 chr6 96857440 96857596 -52659441 + L1MEf LINE L1 2316 2481 -4541 5 1323 506 242 66 99 chr6 96857597 96857808 -52659229 + B3 SINE B2 2 205 -11 5 1323 25 0 0 0 chr6 96857815 96857840 -52659197 + AT_rich Low_complexity Low_complexity 1 25 0 5 1323 486 268 52 35 chr6 96857932 96858048 -52658989 + B1_Mm SINE Alu 1 118 -29 5 1323 290 67 0 22 chr6 96858736 96858782 -52658255 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1323 183 80 0 0 chr6 96859618 96859643 -52657394 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1323 368 311 39 92 chr6 96859764 96860069 -52656968 + B4 SINE B4 4 292 0 5 1323 366 359 115 20 chr6 96860306 96860610 -52656427 + L2a LINE L2 2918 3250 -176 5 1323 633 293 103 67 chr6 96860610 96861056 -52655981 + L1MEf LINE L1 2552 3013 -4024 5 1323 21 57 0 0 chr6 96861061 96861096 -52655941 + AT_rich Low_complexity Low_complexity 1 35 0 5 1323 650 270 20 0 chr6 96861135 96861287 -52655750 - RSINE1 SINE B4 -8 157 3 5 1323 222 118 0 0 chr6 96861300 96861334 -52655703 + (T)n Simple_repeat Simple_repeat 1 34 0 5 165 4310 164 55 75 chr6 96862110 96863018 -52654019 + RMER19B LTR ERVK 1 890 -12 5 1324 269 277 24 24 chr6 96863061 96863146 -52653891 + MLT1C LTR MaLR 383 467 0 5 1324 288 303 20 10 chr6 96863232 96863332 -52653705 + RMER30 DNA MER1_type 2 102 -100 5 1324 2355 77 47 9 chr6 96863336 96863735 -52653302 - RLTR44E LTR ERVK 0 449 1 5 1324 504 260 79 15 chr6 96864081 96864284 -52652753 + B3 SINE B2 1 216 0 5 1324 321 221 0 39 chr6 96865597 96865724 -52651313 + (CATA)n Simple_repeat Simple_repeat 2 123 0 5 1324 257 225 37 24 chr6 96867027 96867109 -52649928 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 5 1324 1956 219 19 31 chr6 96867110 96867434 -52649603 - MTD LTR MaLR 0 419 95 5 1324 1378 148 9 0 chr6 96867434 96867657 -52649380 - URR1A DNA MER1_type 0 226 2 5 1324 1956 219 19 31 chr6 96867657 96867756 -52649281 - MTD LTR MaLR -325 94 1 5 1324 326 330 48 74 chr6 96867835 96868046 -52648991 + ORR1E LTR MaLR 35 243 -141 5 1324 463 270 8 34 chr6 96868190 96868309 -52648728 - PB1D10 SINE Alu -1 116 1 5 1324 432 338 135 29 chr6 96869699 96869906 -52647131 + B4 SINE B4 53 281 -11 5 1324 318 67 0 0 chr6 96869908 96869953 -52647084 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1324 368 341 154 30 chr6 96870286 96870519 -52646518 + MLT1K LTR MaLR 330 591 -4 5 1324 202 191 0 0 chr6 96870837 96870852 -52646185 + A-rich Low_complexity Low_complexity 1 15 0 5 1324 1249 48 0 0 chr6 96870852 96870999 -52646038 + B1_Mm SINE Alu 1 147 0 5 1324 202 191 0 0 chr6 96870999 96871030 -52646007 + A-rich Low_complexity Low_complexity 16 46 0 5 1324 296 216 88 0 chr6 96871031 96871133 -52645904 + L1MB2 LINE L1 5036 5146 -994 5 1324 1387 246 56 53 chr6 96871149 96871505 -52645532 + ORR1E LTR MaLR 3 359 0 5 1324 401 295 84 12 chr6 96871515 96871890 -52645147 + L1MB2 LINE L1 5170 5571 -612 5 1324 33847 46 2 3 chr6 96871923 96877316 -52639721 + L1Md_Gf LINE L1 105 5589 -297 5 1324 8527 29 1 0 chr6 96877316 96878311 -52638726 + L1Md_T LINE L1 5587 6582 0 5 1324 33847 41 3 0 chr6 96878311 96878325 -52638712 + L1Md_Gf LINE L1 5590 5603 -283 5 1324 313 280 8 15 chr6 96878442 96878576 -52638461 + L1MB2 LINE L1 5836 5968 -203 5 1324 886 262 31 69 chr6 96878585 96878934 -52638103 + Looper DNA PiggyBac 925 1260 -298 5 1324 506 119 0 12 chr6 96878962 96879047 -52637990 + (GGGA)n Simple_repeat Simple_repeat 2 85 0 5 1324 748 269 32 0 chr6 96879070 96879226 -52637811 + B3A SINE B2 1 161 -37 5 1324 232 240 0 0 chr6 96879242 96879292 -52637745 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1324 243 140 0 0 chr6 96879347 96879397 -52637640 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1324 565 312 81 40 chr6 96879415 96879692 -52637345 - B4A SINE B4 -1 291 5 5 1324 657 250 108 24 chr6 96879825 96880075 -52636962 - MLT1A0 LTR MaLR -4 361 91 5 1324 296 243 100 27 chr6 96880155 96880265 -52636772 + MLT1D LTR MaLR 105 222 -283 5 1324 216 0 0 0 chr6 96880659 96880683 -52636354 + (GTTTG)n Simple_repeat Simple_repeat 5 28 0 5 1324 485 234 30 23 chr6 96880687 96880818 -52636219 - B1_Mur1 SINE Alu -17 132 1 5 1324 2798 174 29 99 chr6 96880995 96881660 -52635377 + RMER20B LTR ERVK 1 618 -9 5 1324 6080 151 39 174 chr6 96882443 96882504 -52634533 + Lx6 LINE L1 4283 4351 -1529 5 1324 3624 47 4 22 chr6 96882504 96882959 -52634078 - LTRIS5 LTR ERV1 0 447 1 5 1324 6080 151 39 174 chr6 96882959 96883209 -52633828 + Lx6 LINE L1 4352 4622 -1258 5 1324 528 16 0 0 chr6 96883209 96883270 -52633767 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1324 6080 151 39 174 chr6 96883270 96883880 -52633157 + Lx6 LINE L1 4623 4997 -883 5 1324 638 215 13 59 chr6 96883880 96884033 -52633004 + B1_Mur4 SINE Alu 3 148 -2 5 1324 6080 172 34 156 chr6 96884033 96885478 -52631559 + Lx6 LINE L1 4998 6350 -1346 5 1324 5427 150 49 26 chr6 96885478 96886483 -52630554 + RLTR25B LTR ERVK 1 1028 0 5 1324 4270 213 99 14 chr6 96886483 96887518 -52629519 + Lx6 LINE L1 6334 7456 -4 5 1324 819 239 112 82 chr6 96887528 96887797 -52629240 + B4 SINE B4 2 278 -14 5 1324 306 106 0 0 chr6 96887803 96887850 -52629187 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1324 2060 234 61 8 chr6 96888084 96888606 -52628431 - RMER15 LTR ERVL -15 560 11 5 1324 275 220 0 33 chr6 96888676 96888737 -52628300 - RMER15 LTR ERVL -516 59 1 5 1324 1190 199 5 10 chr6 96889746 96889954 -52627083 + B3 SINE B2 9 215 -1 5 1324 320 246 15 0 chr6 96889996 96890061 -52626976 + 5S rRNA rRNA 30 95 -26 5 1324 1229 299 70 21 chr6 96890388 96890774 -52626263 - MTD LTR MaLR -7 412 8 5 1324 255 61 0 0 chr6 96890800 96890833 -52626204 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 5 1324 252 131 57 129 chr6 96890953 96891023 -52626014 + B2_Mm2 SINE B2 2 66 -129 5 1324 431 330 0 10 chr6 96891722 96891823 -52625214 + B1_Mus2 SINE Alu 18 117 -30 5 1324 678 29 48 0 chr6 96891828 96891931 -52625106 + (CAGAGA)n Simple_repeat Simple_repeat 1 108 0 5 1324 572 331 6 24 chr6 96892169 96892336 -52624701 - RSINE1 SINE B4 0 165 2 5 1324 403 329 27 25 chr6 96892349 96892539 -52624498 + MLT1B LTR MaLR 159 361 -29 5 1324 575 108 10 0 chr6 96892566 96892668 -52624369 + (TG)n Simple_repeat Simple_repeat 2 104 0 5 1324 357 356 0 19 chr6 96892668 96892760 -52624277 - RSINE1 SINE B4 -23 142 51 5 1324 2002 180 7 73 chr6 96892763 96893176 -52623861 - ORR1B1 LTR MaLR -8 386 1 5 1324 383 314 19 29 chr6 96893241 96893346 -52623691 - PB1D10 SINE Alu 0 117 14 5 1324 3127 93 36 0 chr6 96893348 96893765 -52623272 + L1_Mus3 LINE L1 6206 6637 -1 5 1324 477 50 0 0 chr6 96894060 96894120 -52622917 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1324 266 265 19 48 chr6 96894494 96894597 -52622440 + MER20B DNA MER1_type 247 346 -437 5 1324 532 273 126 34 chr6 96894598 96894837 -52622200 + MER20B DNA MER1_type 523 783 0 5 1324 304 325 0 0 chr6 96895062 96895139 -52621898 + 5S rRNA rRNA 12 88 -33 5 1324 4312 68 0 0 chr6 96896127 96896627 -52620410 - L1_Mus1 LINE L1 -1 6566 6067 5 1324 326 219 12 0 chr6 96896764 96896846 -52620191 - L1M2 LINE L1 -970 5173 5091 5 1324 1079 117 0 6 chr6 96896846 96897018 -52620019 + (GAAA)n Simple_repeat Simple_repeat 3 173 0 5 1324 210 113 0 138 chr6 96897018 96897141 -52619896 + GA-rich Low_complexity Low_complexity 1 106 0 5 1324 645 292 95 23 chr6 96897153 96897458 -52619579 - L1M2 LINE L1 -1056 5087 4761 5 1324 494 303 77 22 chr6 96897452 96897743 -52619294 - L1M2 LINE L1 -1818 4325 4026 5 1324 960 264 49 47 chr6 96897813 96898242 -52618795 + L1MA8 LINE L1 5255 5684 -607 5 1324 792 206 101 22 chr6 96898265 96898444 -52618593 + B3 SINE B2 24 216 0 5 1324 1178 280 76 14 chr6 96898473 96899000 -52618037 + L1MA8 LINE L1 5702 6278 -34 5 1324 457 311 67 0 chr6 96900222 96900357 -52616680 + ID_B1 SINE B4 72 215 -9 5 1324 10639 205 52 21 chr6 96900722 96901873 -52615164 + L1_Mur3 LINE L1 892 2065 -3812 5 1324 648 70 0 0 chr6 96901873 96901959 -52615078 + (CCA)n Simple_repeat Simple_repeat 1 86 0 5 1324 10639 186 53 13 chr6 96901959 96903423 -52613614 + L1_Mur3 LINE L1 2066 3602 -2275 5 1324 330 333 18 88 chr6 96903652 96903664 -52613373 - B4A SINE B4 -59 233 180 5 1324 597 267 7 29 chr6 96903664 96903803 -52613234 - B1_Mur1 SINE Alu -7 142 7 5 1324 330 333 18 88 chr6 96903803 96903823 -52613214 - B4A SINE B4 -59 179 75 5 1324 701 292 47 47 chr6 96903810 96903827 -52613210 - ID_B1 SINE B4 -7 217 201 5 1324 1910 154 96 25 chr6 96903827 96904180 -52612857 + ORR1C1 LTR MaLR 1 378 0 5 1324 701 292 47 47 chr6 96904180 96904374 -52612663 - ID_B1 SINE B4 -24 200 6 5 1324 236 322 82 49 chr6 96904486 96904669 -52612368 + Charlie4 DNA MER1_type 35 223 -1738 5 1324 303 251 50 146 chr6 96904709 96904928 -52612109 + Charlie4 DNA MER1_type 1736 1933 -28 5 1324 444 328 66 45 chr6 96904886 96905084 -52611953 - MLT1D LTR MaLR -292 213 12 5 1324 1090 105 0 14 chr6 96905775 96905920 -52611117 + B1_Mus1 SINE Alu 1 143 -5 5 1324 24 0 0 0 chr6 96905925 96905949 -52611088 + AT_rich Low_complexity Low_complexity 1 24 0 5 1324 1393 87 27 0 chr6 96905958 96906142 -52610895 + B2_Mm2 SINE B2 1 189 -6 5 1324 7484 34 3 3 chr6 96906641 96907493 -52609544 + L1Md_F3 LINE L1 5732 6583 -1 6 1324 205 292 0 27 chr6 96907860 96907934 -52609103 + L2a LINE L2 2399 2470 -949 6 1324 213 189 0 0 chr6 96907966 96908003 -52609034 + G-rich Low_complexity Low_complexity 4 40 0 6 1324 188 311 90 30 chr6 96908078 96908244 -52608793 + L2a LINE L2 2575 2750 -669 6 1324 227 291 93 0 chr6 96908489 96908575 -52608462 + L2a LINE L2 3333 3426 0 6 1324 10808 74 23 34 chr6 96909718 96911172 -52605865 + MusHAL1 LINE L1 7 1445 -1908 6 1324 1105 103 14 0 chr6 96911172 96911317 -52605720 + B1_Mus1 SINE Alu 2 148 0 6 1324 10808 64 9 27 chr6 96911317 96912035 -52605002 + MusHAL1 LINE L1 1446 2149 -1204 6 1324 39426 5 0 0 chr6 96912032 96917394 -52599643 + L1Md_A LINE L1 224 5586 -297 6 1324 9614 3 0 0 chr6 96917394 96918390 -52598647 + L1Md_A LINE L1 5587 6582 0 6 1324 8074 89 8 14 chr6 96918441 96919625 -52597412 + MusHAL1 LINE L1 2136 3312 -41 6 1324 36270 34 0 0 chr6 96919621 96925087 -52591950 + L1Md_T LINE L1 27 5589 -297 6 1324 9561 6 0 0 chr6 96925087 96926083 -52590954 + L1Md_T LINE L1 5590 6585 0 6 1324 206 200 0 0 chr6 96926172 96926212 -52590825 - MIRm SINE MIR -18 258 219 6 1324 255 61 0 0 chr6 96926335 96926368 -52590669 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1324 478 263 44 60 chr6 96926651 96926833 -52590204 + RLTR23 LTR ERV1 248 426 -4 6 1324 1221 249 16 86 chr6 96926835 96926876 -52590161 - MTE2b LTR MaLR -24 355 315 6 1324 1873 143 36 65 chr6 96926876 96927212 -52589825 - ORR1A3 LTR MaLR 0 326 1 6 1324 1221 249 16 86 chr6 96927212 96927552 -52589485 - MTE2b LTR MaLR -65 314 1 6 1324 246 292 101 28 chr6 96927575 96927684 -52589353 + MIRb SINE MIR 17 133 -135 6 1324 736 288 60 10 chr6 96927782 96927982 -52589055 + MER58A DNA MER1_type 1 210 -14 6 1324 247 259 200 18 chr6 96928035 96928145 -52588892 + MER5A1 DNA MER1_type 36 165 -1 6 1324 348 24 0 0 chr6 96928207 96928248 -52588789 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 6 1324 686 304 31 36 chr6 96928523 96928745 -52588292 - ID_B1 SINE B4 -2 222 2 6 1324 315 237 82 66 chr6 96929058 96929180 -52587857 + MTEb LTR MaLR 256 379 0 6 1324 414 0 0 0 chr6 96929261 96929307 -52587730 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1324 1001 252 10 5 chr6 96929320 96929527 -52587510 - B4A SINE B4 -35 257 50 6 1324 466 272 80 46 chr6 96929560 96929799 -52587238 - L1MA8 LINE L1 -1 6290 6044 6 1324 1996 180 6 0 chr6 96929943 96930265 -52586772 - ORR1A3 LTR MaLR -2 324 1 6 1324 251 368 52 94 chr6 96930470 96930534 -52586503 - MER58C DNA MER1_type -30 185 127 6 1324 858 239 39 70 chr6 96930534 96930763 -52586274 - ID_B1 SINE B4 0 224 3 6 1324 251 368 52 94 chr6 96930763 96930890 -52586147 - MER58C DNA MER1_type -89 126 2 6 1324 336 349 9 9 chr6 96930955 96931065 -52585972 + PB1 SINE Alu 10 119 -8 6 1324 183 281 76 19 chr6 96931074 96931179 -52585858 - L2a LINE L2 -98 3328 3218 6 1324 702 226 73 36 chr6 96931193 96931397 -52585640 + ID_B1 SINE B4 7 216 -8 6 1324 944 257 63 52 chr6 96932266 96932537 -52584500 + B4 SINE B4 15 288 -4 6 1324 678 58 0 0 chr6 96932581 96932668 -52584369 + (GGA)n Simple_repeat Simple_repeat 2 88 0 6 1324 301 279 21 31 chr6 96933080 96933099 -52583938 - ID_B1 SINE B4 -123 101 74 6 1324 450 0 0 0 chr6 96933107 96933157 -52583880 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1324 213 39 0 0 chr6 96933157 96933183 -52583854 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1324 301 279 21 31 chr6 96933183 96933250 -52583787 - ID SINE ID -151 73 8 6 1324 522 57 0 0 chr6 96934303 96934373 -52582664 + (TCC)n Simple_repeat Simple_repeat 3 72 0 6 1324 450 0 0 0 chr6 96934373 96934423 -52582614 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1324 385 327 19 38 chr6 96934983 96935142 -52581895 + MLT1H1 LTR MaLR 1 156 -399 6 1324 966 294 49 11 chr6 96935552 96935817 -52581220 + B4 SINE B4 4 278 -14 6 1324 312 167 0 0 chr6 96935817 96935889 -52581148 + GA-rich Low_complexity Low_complexity 1 72 0 6 1324 206 277 0 0 chr6 96935909 96935956 -52581081 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1324 399 41 0 0 chr6 96935968 96936017 -52581020 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1324 460 306 22 7 chr6 96936885 96937023 -52580014 - B4A SINE B4 -15 277 138 6 1324 1241 74 0 6 chr6 96937058 96937221 -52579816 - L1_Mus2 LINE L1 0 6566 6405 6 1324 184 158 0 34 chr6 96937235 96937294 -52579743 + (TGGG)n Simple_repeat Simple_repeat 4 60 0 6 1324 233 283 145 65 chr6 96937438 96937638 -52579399 + MIR SINE MIR 11 226 -36 6 1324 209 324 182 19 chr6 96938004 96938218 -52578819 - L2 LINE L2 -341 3078 2830 6 1324 180 97 0 0 chr6 96939133 96939164 -52577873 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1324 406 264 89 45 chr6 96939684 96939847 -52577190 + ORR1E LTR MaLR 205 364 -6 6 1324 547 270 0 8 chr6 96940522 96940649 -52576388 - MTEb LTR MaLR -3 376 251 6 1324 1159 90 6 11 chr6 96940740 96940920 -52576117 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 1324 911 225 140 101 chr6 96942736 96942908 -52574129 - MTEb LTR MaLR -8 371 171 6 1324 206 62 0 30 chr6 96942908 96942941 -52574096 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1324 911 225 140 101 chr6 96942941 96943066 -52573971 - MTEb LTR MaLR -209 170 60 6 1324 2571 77 3 60 chr6 96943066 96943413 -52573624 - ORR1A2 LTR MaLR 0 327 1 6 1324 911 225 140 101 chr6 96943413 96943470 -52573567 - MTEb LTR MaLR -320 59 2 6 1324 270 301 108 54 chr6 96943814 96944018 -52573019 - MER102a DNA MER1_type 0 330 116 6 1324 394 234 102 66 chr6 96944185 96944322 -52572715 + B4A SINE B4 74 215 -77 6 1324 211 300 0 14 chr6 96944383 96944454 -52572583 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 6 1324 434 235 0 11 chr6 96944455 96944636 -52572401 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1324 687 283 149 4 chr6 96945321 96945569 -52571468 + B4 SINE B4 5 288 -4 6 1324 818 254 25 20 chr6 96945651 96945848 -52571189 + B3 SINE B2 19 216 0 6 1324 508 278 86 0 chr6 96945974 96946125 -52570912 + RSINE1 SINE B4 2 165 0 6 1324 813 52 0 57 chr6 96946340 96946462 -52570575 + L1_Mus1 LINE L1 6453 6567 0 6 1324 378 351 114 26 chr6 96946478 96946829 -52570208 + L1ME1 LINE L1 4974 5355 -791 6 1324 662 278 48 24 chr6 96946836 96946998 -52570039 + B3 SINE B2 2 167 -49 6 1324 198 91 0 0 chr6 96946998 96947031 -52570006 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1324 662 278 48 24 chr6 96947031 96947078 -52569959 + B3 SINE B2 168 215 -1 6 1324 713 286 73 92 chr6 96947080 96947512 -52569525 + L1ME1 LINE L1 5367 5810 -369 6 1324 333 0 0 0 chr6 96947512 96947549 -52569488 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 6 1324 713 286 73 92 chr6 96947549 96947705 -52569332 + L1ME1 LINE L1 5811 5944 -235 6 1324 358 283 40 80 chr6 96947786 96947936 -52569101 + B4A SINE B4 2 145 -147 6 1324 251 93 23 0 chr6 96948041 96948084 -52568953 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 6 1324 912 126 22 0 chr6 96948104 96948239 -52568798 - B1_Mur4 SINE Alu -7 143 6 6 1324 415 254 57 8 chr6 96949039 96949162 -52567875 - MamRep434 DNA TcMar -292 134 6 6 1324 779 202 141 16 chr6 96949491 96949682 -52567355 + B3 SINE B2 2 216 0 6 1324 859 127 188 41 chr6 96951641 96951838 -52565199 + URR1A DNA MER1_type 1 226 0 6 1324 21 57 0 0 chr6 96952976 96953011 -52564026 + AT_rich Low_complexity Low_complexity 1 35 0 6 1324 604 275 0 7 chr6 96953119 96953262 -52563775 + B1_Mur1 SINE Alu 8 149 0 6 1324 4766 80 9 11 chr6 96953783 96954438 -52562599 + L1_Mus3 LINE L1 5982 6635 -3 6 1324 360 0 0 0 chr6 96954466 96954506 -52562531 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1324 878 163 7 13 chr6 96954843 96954992 -52562045 + B1_Mur1 SINE Alu 1 148 -1 6 1324 207 0 0 0 chr6 96955000 96955023 -52562014 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1324 225 202 82 12 chr6 96955104 96955189 -52561848 + Charlie5 DNA MER1_type 2487 2577 -47 6 1324 404 0 39 0 chr6 96956049 96956100 -52560937 + (GTTTG)n Simple_repeat Simple_repeat 5 57 0 6 1324 370 309 100 24 chr6 96956261 96956479 -52560558 - MIR SINE MIR -22 240 6 6 1324 360 0 0 0 chr6 96956602 96956642 -52560395 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1324 429 20 0 0 chr6 96957683 96957733 -52559304 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1324 874 219 72 38 chr6 96958182 96958241 -52558796 + B3 SINE B2 1 58 -158 6 1324 196 53 26 26 chr6 96958241 96958280 -52558757 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1324 874 219 72 38 chr6 96958280 96958429 -52558608 + B3 SINE B2 59 216 0 6 1324 21 0 0 0 chr6 96958706 96958727 -52558310 + GC_rich Low_complexity Low_complexity 1 21 0 6 1324 1290 70 0 0 chr6 96960201 96960873 -52556164 + (TG)n Simple_repeat Simple_repeat 1 672 0 6 1324 535 280 0 47 chr6 96960891 96961041 -52555996 - B4A SINE B4 -32 260 118 6 1324 410 274 0 35 chr6 96961042 96961212 -52555825 + (ACCTG)n Simple_repeat Simple_repeat 3 166 0 6 1324 417 273 0 39 chr6 96961241 96961420 -52555617 + (ACCTG)n Simple_repeat Simple_repeat 3 174 0 6 1324 383 351 37 0 chr6 96961434 96961568 -52555469 - B4A SINE B4 -152 140 2 6 1324 252 250 0 0 chr6 96962105 96962157 -52554880 - PB1D10 SINE Alu -15 102 51 6 1324 403 285 0 152 chr6 96962161 96962262 -52554775 + PB1 SINE Alu 1 94 -33 6 1324 647 299 29 105 chr6 96962262 96962643 -52554394 + ORR1E LTR MaLR 4 355 -4 6 1324 403 285 0 152 chr6 96962643 96962686 -52554351 + PB1 SINE Alu 95 123 -4 6 1324 484 243 62 56 chr6 96965016 96965160 -52551877 + B1F SINE Alu 4 148 -1 6 1324 728 265 69 87 chr6 96965286 96965575 -52551462 + B4A SINE B4 1 284 -8 6 1324 280 305 0 12 chr6 96965581 96965664 -52551373 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1324 384 59 0 0 chr6 96965799 96965850 -52551187 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1324 488 218 127 0 chr6 96965860 96965970 -52551067 - B3A SINE B2 -74 124 1 6 1324 250 302 35 0 chr6 96966102 96966188 -52550849 - MER2 DNA MER2_type -42 303 215 6 1324 466 301 67 21 chr6 96966727 96966920 -52550117 - MER2 DNA MER2_type -113 232 31 6 1324 308 208 13 65 chr6 96967519 96967596 -52549441 - PB1D9 SINE Alu -10 110 38 6 1324 785 238 108 10 chr6 96967997 96968201 -52548836 + ID_B1 SINE B4 1 224 0 6 1324 396 0 0 0 chr6 96968575 96968619 -52548418 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1324 466 261 44 7 chr6 96968900 96969035 -52548002 - MLT1E1 LTR MaLR -454 200 61 6 1324 322 264 66 8 chr6 96969061 96969183 -52547854 + LTR33A LTR ERVL 385 513 -7 6 1324 418 196 48 29 chr6 96969322 96969427 -52547610 + PB1D9 SINE Alu 2 108 -12 6 1324 921 151 0 20 chr6 96969651 96969800 -52547237 - B1_Mus1 SINE Alu -2 146 1 7 1324 298 244 22 22 chr6 96970255 96970347 -52546690 + (TATG)n Simple_repeat Simple_repeat 3 94 0 7 1324 761 256 52 169 chr6 96970365 96970606 -52546431 - B4 SINE B4 -4 288 86 7 1324 227 31 31 0 chr6 96970606 96970638 -52546399 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1324 684 206 0 56 chr6 96970638 96970782 -52546255 - B1_Mur4 SINE Alu -12 138 3 7 1324 761 256 52 169 chr6 96970782 96970864 -52546173 - B4 SINE B4 -207 85 3 7 1324 180 0 0 0 chr6 96971894 96971914 -52545123 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1324 842 259 26 10 chr6 96972131 96972309 -52544728 - ID_B1 SINE B4 -26 198 17 7 1324 378 0 0 0 chr6 96972309 96972351 -52544686 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1324 842 259 26 10 chr6 96972351 96972367 -52544670 - ID SINE ID -208 16 2 7 1324 317 303 59 94 chr6 96973309 96973515 -52543522 + L1MC4 LINE L1 7767 7968 -74 7 1324 296 102 0 20 chr6 96973515 96973565 -52543472 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 7 1324 317 303 59 94 chr6 96973565 96973613 -52543424 + L1MC4 LINE L1 7969 8012 -30 7 1324 643 225 109 0 chr6 96973795 96973933 -52543104 + RSINE1 SINE B4 3 155 -10 7 1324 297 0 0 0 chr6 96973947 96973980 -52543057 + (CATA)n Simple_repeat Simple_repeat 3 35 0 7 1324 395 314 88 32 chr6 96974044 96974169 -52542868 + ID_B1 SINE B4 84 215 -9 7 1324 368 286 41 19 chr6 96974258 96974367 -52542670 + PB1D10 SINE Alu 3 115 -34 7 1324 226 351 26 0 chr6 96974383 96974460 -52542577 + ID4_ SINE ID 5 83 0 7 1324 206 321 24 12 chr6 96974512 96974597 -52542440 - MIRb SINE MIR -139 129 44 7 1324 235 0 57 0 chr6 96975714 96975749 -52541288 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 7 1324 21 36 0 0 chr6 96977609 96977637 -52539400 + AT_rich Low_complexity Low_complexity 1 28 0 7 1324 1047 205 11 0 chr6 96978842 96979032 -52538005 - ID_B1 SINE B4 -15 209 18 7 1324 231 235 276 0 chr6 96979495 96979593 -52537444 + L4 LINE RTE 1704 1828 -201 7 1324 1314 84 28 0 chr6 96980013 96980191 -52536846 + B2_Mm1t SINE B2 2 184 -9 7 1324 260 333 98 29 chr6 96981214 96981316 -52535721 - MamGypLTR1d LTR Gypsy -436 377 269 7 1324 1059 128 180 5 chr6 96982044 96982233 -52534804 - URR1B DNA MER1_type -3 222 1 7 1324 21 0 0 0 chr6 96982561 96982582 -52534455 + AT_rich Low_complexity Low_complexity 1 21 0 7 1324 478 320 17 52 chr6 96982827 96983058 -52533979 + Charlie4a DNA MER1_type 9 231 -277 7 1324 809 280 75 11 chr6 96983245 96983455 -52533582 + B4A SINE B4 1 224 -68 7 1324 326 23 23 0 chr6 96983455 96983498 -52533539 + (CATA)n Simple_repeat Simple_repeat 2 45 0 7 1324 207 88 0 0 chr6 96983498 96983532 -52533505 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 7 1324 809 280 75 11 chr6 96983532 96983587 -52533450 + B4A SINE B4 225 282 -10 7 1324 324 0 0 0 chr6 96983602 96983638 -52533399 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1324 417 300 44 26 chr6 96983666 96983779 -52533258 + B1F SINE Alu 33 147 -2 7 1324 516 313 0 15 chr6 96983779 96983915 -52533122 + RSINE1 SINE B4 1 134 -31 7 1324 3539 30 0 0 chr6 96983942 96984338 -52532699 - MTA_Mm LTR MaLR 0 396 1 7 1324 384 56 27 27 chr6 96984339 96984412 -52532625 + (CATA)n Simple_repeat Simple_repeat 2 74 0 7 1324 198 0 0 0 chr6 96984412 96984434 -52532603 + (GA)n Simple_repeat Simple_repeat 2 23 0 7 1324 459 0 0 0 chr6 96984434 96984485 -52532552 + (GGAA)n Simple_repeat Simple_repeat 4 54 0 7 1324 312 27 0 0 chr6 96986233 96986270 -52530767 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1324 190 312 77 73 chr6 96987598 96987857 -52529180 + L3 LINE CR1 2653 2912 -1577 7 1324 918 278 5 0 chr6 96988202 96988414 -52528623 + ID_B1 SINE B4 5 217 -7 7 1324 254 315 114 26 chr6 96989391 96989505 -52527532 - B4A SINE B4 -168 124 1 7 1324 269 246 0 0 chr6 96992201 96992258 -52524779 + B4 SINE B4 85 141 -151 7 1324 263 237 17 0 chr6 96992305 96992364 -52524673 + MIR SINE MIR 7 66 -196 7 1324 194 263 70 0 chr6 96992583 96992640 -52524397 + MIR SINE MIR 201 261 -1 7 1324 230 277 31 0 chr6 96992718 96992783 -52524254 + L1M5 LINE L1 5651 5717 -456 7 1324 896 258 79 47 chr6 96992968 96993245 -52523792 + B4 SINE B4 5 290 -2 7 165 356 380 0 0 chr6 96993249 96993415 -52523622 + (CA)n Simple_repeat Simple_repeat 1 166 0 7 1325 406 244 22 11 chr6 96994096 96994187 -52522850 + B3 SINE B2 125 216 0 7 1325 414 185 25 0 chr6 96994912 96994993 -52522044 - ID4 SINE ID 0 83 1 7 1325 531 240 61 17 chr6 96995509 96995684 -52521353 + Lx8 LINE L1 6973 7172 -472 7 1325 606 214 9 0 chr6 96995963 96996075 -52520962 + ID_B1 SINE B4 85 197 -27 7 1325 227 348 43 0 chr6 96996534 96996622 -52520415 - MER3 DNA MER1_type 0 209 118 7 1325 800 276 108 44 chr6 96996622 96997031 -52520006 + RMER10A LTR ERVL 2 436 -6 7 1325 249 33 0 0 chr6 96997031 96997061 -52519976 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1325 251 278 0 0 chr6 96997189 96997243 -52519794 - B4 SINE B4 -5 287 234 7 1325 219 150 0 24 chr6 96997251 96997292 -52519745 + CT-rich Low_complexity Low_complexity 4 43 0 7 1325 357 243 80 37 chr6 96997292 96997418 -52519619 - B4 SINE B4 -46 246 115 7 1325 739 293 62 4 chr6 96997474 96997748 -52519289 + B4A SINE B4 1 290 -2 7 1325 267 31 0 0 chr6 96997754 96997786 -52519251 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1325 638 114 0 50 chr6 96998825 96998852 -52518185 + polypurine Low_complexity Low_complexity 4 25 0 7 1325 1074 133 0 0 chr6 96998852 96999025 -52518012 + (GA)n Simple_repeat Simple_repeat 1 173 0 7 1325 638 114 0 50 chr6 96999025 96999117 -52517920 + polypurine Low_complexity Low_complexity 26 117 0 7 1325 765 85 0 0 chr6 96999117 96999223 -52517814 + (GGAAA)n Simple_repeat Simple_repeat 4 109 0 7 1325 632 259 8 0 chr6 96999724 96999855 -52517182 + ID_B1 SINE B4 79 210 -14 7 1325 204 0 0 156 chr6 96999860 96999956 -52517081 + (ATATG)n Simple_repeat Simple_repeat 1 81 0 7 1325 263 333 74 16 chr6 97000813 97000935 -52516102 + MER5A DNA MER1_type 40 168 -21 1 1325 353 289 32 24 chr6 97000950 97001074 -52515963 + B1F SINE Alu 13 137 -12 2 1325 789 281 77 15 chr6 97001076 97001350 -52515687 + B4A SINE B4 2 292 0 3 1325 235 152 22 0 chr6 97001392 97001438 -52515599 + (CAGA)n Simple_repeat Simple_repeat 3 49 0 4 1325 251 283 33 8 chr6 97002999 97003120 -52513917 + L1MB3 LINE L1 5549 5672 -511 5 1325 308 194 35 88 chr6 97003184 97003297 -52513740 + Lx7 LINE L1 7590 7696 0 6 1325 874 290 50 25 chr6 97003455 97003857 -52513180 + L1MB3 LINE L1 5725 6167 -16 5 1325 574 268 0 34 chr6 97003996 97004143 -52512894 + B1F SINE Alu 1 142 -7 7 1325 4901 193 35 6 chr6 97004205 97005157 -52511880 + Lx9 LINE L1 6525 7503 -141 8 1325 24 0 0 0 chr6 97005590 97005614 -52511423 + AT_rich Low_complexity Low_complexity 1 24 0 9 1325 928 235 125 15 chr6 97005683 97005947 -52511090 + Lx8 LINE L1 7168 7460 -13 1 1325 522 198 123 0 chr6 97005947 97006053 -52510984 + B1_Mur1 SINE Alu 18 136 -13 1 1325 270 0 0 0 chr6 97006067 97006097 -52510940 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 1 1325 530 275 26 45 chr6 97006363 97006519 -52510518 - RSINE1 SINE B4 0 165 13 1 1325 216 0 0 0 chr6 97010879 97010903 -52506134 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1325 422 233 259 7 chr6 97010921 97011068 -52505969 + ID_B1 SINE B4 34 217 -7 1 1325 367 288 77 27 chr6 97011178 97011325 -52505712 - MIRb SINE MIR -49 159 10 1 1325 403 305 130 52 chr6 97012700 97012970 -52504067 + B4 SINE B4 2 292 0 1 1325 968 314 71 37 chr6 97014354 97014846 -52502191 + L1MB3 LINE L1 5673 6181 -2 1 1325 372 220 167 17 chr6 97016512 97016632 -52500405 + RSINE1 SINE B4 4 141 -24 1 1325 413 81 16 0 chr6 97016633 97016695 -52500342 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1325 342 274 18 73 chr6 97017963 97018128 -52498909 + MLT2B1 LTR ERVL 410 565 -2 2 1325 810 136 0 0 chr6 97018216 97018348 -52498689 + (GCTG)n Simple_repeat Simple_repeat 4 135 0 2 1325 373 256 92 8 chr6 97018644 97018774 -52498263 - B1F2 SINE Alu 0 149 9 2 1325 230 344 62 31 chr6 97019331 97019460 -52497577 - MER20 DNA MER1_type 0 219 87 2 1325 362 125 33 22 chr6 97019536 97019626 -52497411 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 2 1325 381 214 0 106 chr6 97019774 97019868 -52497169 + B1_Mur2 SINE Alu 60 143 -6 2 1325 330 132 30 99 chr6 97019872 97019973 -52497064 - MER63D DNA AcHobo -48 1013 920 2 1325 247 299 149 0 chr6 97019985 97020159 -52496878 - L1M5 LINE L1 -297 5827 5628 2 1325 3445 38 2 0 chr6 97020380 97020775 -52496262 - MTA_Mm LTR MaLR 0 396 1 2 1325 1200 284 53 17 chr6 97020789 97021144 -52495893 + MTEa LTR MaLR 10 377 -2 3 1325 234 91 0 0 chr6 97022116 97022149 -52494888 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 3 1325 693 220 7 0 chr6 97022150 97022291 -52494746 - ID_B1 SINE B4 0 224 83 3 1325 655 173 0 14 chr6 97022448 97022589 -52494448 + CT-rich Low_complexity Low_complexity 3 141 0 3 1325 228 347 0 0 chr6 97022589 97022664 -52494373 - B1F1 SINE Alu -14 135 61 3 1325 295 293 60 8 chr6 97022655 97022772 -52494265 - B1F SINE Alu -22 127 5 3 1325 24 32 0 0 chr6 97022776 97022807 -52494230 + AT_rich Low_complexity Low_complexity 1 31 0 3 1325 789 284 99 18 chr6 97023137 97023470 -52493567 + L1MB7 LINE L1 5814 6173 -11 3 1325 267 305 130 72 chr6 97024263 97024401 -52492636 + B3 SINE B2 41 186 -30 3 1325 353 292 151 14 chr6 97024437 97024532 -52492505 + B4 SINE B4 107 210 -82 3 1325 486 0 0 0 chr6 97024532 97024586 -52492451 + (TAA)n Simple_repeat Simple_repeat 3 56 0 4 1325 353 292 151 14 chr6 97024586 97024629 -52492408 + B4 SINE B4 211 264 -28 3 1325 185 65 0 31 chr6 97024635 97024667 -52492370 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 4 1325 1182 181 14 9 chr6 97024977 97025189 -52491848 + B3 SINE B2 4 216 0 4 1325 979 179 64 36 chr6 97025448 97025668 -52491369 + Lx8 LINE L1 6332 6557 -916 4 1325 192 267 16 62 chr6 97025883 97025947 -52491090 + MIR SINE MIR 176 236 -26 4 1325 242 320 41 0 chr6 97025969 97026066 -52490971 - MIR SINE MIR -64 198 98 4 1325 600 81 0 0 chr6 97026756 97026843 -52490194 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1325 232 337 47 0 chr6 97026846 97026932 -52490105 - RSINE1 SINE B4 -2 163 74 4 1325 1227 41 7 0 chr6 97027030 97027176 -52489861 + B1_Mm SINE Alu 1 147 0 4 1325 1534 161 0 4 chr6 97027283 97027539 -52489498 - MTC LTR MaLR -8 413 159 4 1325 216 135 0 0 chr6 97027557 97027594 -52489443 - B4A SINE B4 -253 39 3 5 1325 572 247 72 21 chr6 97029258 97029494 -52487543 + L1MA5 LINE L1 6053 6300 0 5 1325 186 103 0 0 chr6 97029783 97029812 -52487225 + (C)n Simple_repeat Simple_repeat 1 29 0 5 1325 283 219 16 0 chr6 97030457 97030521 -52486516 - L1ME2 LINE L1 -30 6134 6070 5 1325 591 202 0 0 chr6 97031404 97031528 -52485509 + (TA)n Simple_repeat Simple_repeat 2 125 0 5 1325 1490 77 18 5 chr6 97031530 97031751 -52485286 - Lx2A1 LINE L1 -18 6990 6767 5 1325 386 255 20 0 chr6 97032031 97032129 -52484908 + PB1D10 SINE Alu 18 117 0 5 1325 685 237 182 13 chr6 97032133 97032364 -52484673 + B4A SINE B4 1 270 -22 5 1325 2131 149 21 51 chr6 97032404 97032793 -52484244 + ORR1C1 LTR MaLR 2 378 0 5 1325 294 262 48 16 chr6 97032794 97032918 -52484119 - MER58B DNA MER1_type -157 184 57 5 1325 272 297 21 21 chr6 97032907 97033000 -52484037 - MER58B DNA MER1_type -238 103 11 5 1325 1130 229 78 73 chr6 97033863 97034235 -52482802 + MTE2a LTR MaLR 6 379 0 6 1325 694 225 21 0 chr6 97035628 97035770 -52481267 - RSINE1 SINE B4 -19 146 2 6 1325 366 372 72 20 chr6 97035781 97035976 -52481061 - MLT1G LTR MaLR -368 223 19 6 1325 387 286 19 0 chr6 97036097 97036202 -52480835 - Tigger7 DNA MER2_type -10 2481 2375 6 1325 649 294 31 96 chr6 97036203 97036587 -52480450 + ORR1E LTR MaLR 1 359 0 6 1325 575 224 17 109 chr6 97036589 97036764 -52480273 + ORR1E-int LTR MaLR 1 159 -1421 6 1325 1439 288 131 57 chr6 97036759 97037338 -52479699 + ORR1E-int LTR MaLR 313 929 -651 6 1325 180 0 0 0 chr6 97037338 97037358 -52479679 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1325 1439 315 98 82 chr6 97037358 97037723 -52479314 + ORR1E-int LTR MaLR 808 1209 -161 6 1325 20516 19 1 0 chr6 97037736 97040755 -52476282 - L1Md_T LINE L1 0 6582 3562 6 1325 763 274 33 65 chr6 97040755 97041122 -52475915 + ORR1E LTR MaLR 3 357 -2 6 1325 1385 167 169 45 chr6 97042532 97042864 -52474173 + ORR1D1 LTR MaLR 2 374 0 6 1325 237 346 7 58 chr6 97044571 97044709 -52472328 + L1M5 LINE L1 5592 5722 -402 6 1325 261 0 0 0 chr6 97045038 97045067 -52471970 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1325 1229 89 0 11 chr6 97045569 97045751 -52471286 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 1325 2202 126 131 5 chr6 97047619 97047993 -52469044 - MTC LTR MaLR 0 421 1 7 1325 318 50 0 0 chr6 97048591 97048631 -52468406 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 7 1325 1019 80 73 0 chr6 97049069 97049206 -52467831 + B1_Mus1 SINE Alu 2 148 0 7 1325 804 134 188 6 chr6 97049228 97049393 -52467644 + URR1A DNA MER1_type 1 195 -31 7 1325 759 194 28 0 chr6 97049739 97049883 -52467154 + B3A SINE B2 2 149 -49 7 1325 25 51 0 0 chr6 97049930 97049969 -52467068 + AT_rich Low_complexity Low_complexity 1 39 0 7 1325 279 136 0 0 chr6 97050151 97050210 -52466827 + (TTGG)n Simple_repeat Simple_repeat 1 59 0 7 1325 895 255 30 50 chr6 97053258 97053555 -52463482 + B4A SINE B4 2 292 0 7 1325 204 200 0 0 chr6 97053555 97053600 -52463437 + (CATATA)n Simple_repeat Simple_repeat 5 49 0 7 1325 195 275 43 21 chr6 97053988 97054081 -52462956 - MER5A DNA MER1_type -21 168 74 8 1325 556 245 69 31 chr6 97054280 97054440 -52462597 + B3A SINE B2 2 167 -31 8 1325 874 281 92 45 chr6 97054479 97054859 -52462178 + MTD LTR MaLR 18 415 -4 8 1325 2144 224 21 23 chr6 97054897 97055373 -52461664 - Lx5 LINE L1 -11 7039 6565 8 1325 477 296 123 12 chr6 97055534 97055705 -52461332 + MTEb LTR MaLR 1 190 -189 8 1325 2094 203 97 23 chr6 97055742 97056266 -52460771 + RMER4B LTR ERVK 20 582 -3 8 1325 420 297 60 12 chr6 97056276 97056443 -52460594 + MTEb LTR MaLR 205 379 0 8 1325 449 227 125 8 chr6 97057168 97057288 -52459749 - ID_B1 SINE B4 -6 218 85 8 1325 1158 241 100 31 chr6 97057372 97057723 -52459314 + MTEb LTR MaLR 1 375 -4 8 1325 429 20 0 0 chr6 97058190 97058240 -52458797 + (GA)n Simple_repeat Simple_repeat 2 51 0 8 1325 508 74 24 12 chr6 97058238 97058320 -52458717 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 8 1325 257 350 87 28 chr6 97059007 97059330 -52457707 + L2a LINE L2 2981 3322 -104 9 1325 682 160 0 2 chr6 97059466 97059593 -52457444 - B1_Mur4 SINE Alu -20 129 6 9 1325 291 270 53 26 chr6 97059492 97059606 -52457431 - B4A SINE B4 -98 194 78 9 1325 926 161 200 0 chr6 97059606 97059786 -52457251 - B3 SINE B2 0 216 1 9 1325 369 0 0 0 chr6 97061389 97061430 -52455607 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1325 299 254 14 0 chr6 97061434 97061505 -52455532 - ID4_ SINE ID -11 72 1 9 1325 436 229 0 62 chr6 97061844 97061956 -52455081 + PB1D10 SINE Alu 1 105 -12 9 1325 433 348 68 10 chr6 97062312 97062518 -52454519 - MER58A DNA MER1_type 0 224 7 9 1325 213 204 82 0 chr6 97062954 97063003 -52454034 + ID4 SINE ID 31 83 0 9 1325 537 222 12 24 chr6 97064640 97064806 -52452231 + (TATG)n Simple_repeat Simple_repeat 3 166 0 9 1325 901 216 38 24 chr6 97064929 97065142 -52451895 - B3 SINE B2 0 216 1 1 1325 684 168 71 28 chr6 97065273 97065414 -52451623 - B1_Mur4 SINE Alu -2 148 2 1 1325 663 179 0 0 chr6 97065556 97065696 -52451341 + (TA)n Simple_repeat Simple_repeat 2 141 0 1 1325 246 250 0 12 chr6 97065731 97065812 -52451225 + MER102a DNA MER1_type 73 152 -178 1 1325 333 223 0 0 chr6 97066169 97066263 -52450774 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1325 850 278 38 28 chr6 97066386 97066444 -52450593 - B4A SINE B4 0 292 236 1 1325 499 289 170 16 chr6 97066444 97066697 -52450340 - B4A SINE B4 0 292 1 1 1325 850 278 38 28 chr6 97066697 97066927 -52450110 - B4A SINE B4 -57 235 1 1 1325 228 185 111 0 chr6 97067223 97067277 -52449760 - L5 LINE RTE -210 2055 1996 1 1325 356 209 34 23 chr6 97067823 97067911 -52449126 + B1F SINE Alu 34 122 -27 1 1325 348 64 0 0 chr6 97067913 97067960 -52449077 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1325 477 0 0 0 chr6 97067960 97068012 -52449025 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1325 243 88 0 0 chr6 97068787 97068821 -52448216 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1325 576 300 142 22 chr6 97069140 97069603 -52447434 + L1MA5A LINE L1 5770 6288 -9 1 1325 255 103 0 0 chr6 97070542 97070581 -52446456 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 1 1325 294 336 79 35 chr6 97071095 97071319 -52445718 - MIR SINE MIR -35 233 3 1 1325 805 37 0 0 chr6 97071453 97071561 -52445476 - L1Md_T LINE L1 0 6582 6475 1 1325 240 35 0 0 chr6 97072127 97072156 -52444881 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 1325 378 328 30 7 chr6 97072404 97072539 -52444498 + MER2 DNA MER2_type 206 343 -2 1 1325 262 369 0 0 chr6 97072605 97072708 -52444329 + G-rich Low_complexity Low_complexity 3 105 0 1 1325 933 138 60 22 chr6 97073026 97073211 -52443826 + B2_Mm2 SINE B2 2 193 -2 1 1325 977 143 147 10 chr6 97073389 97073587 -52443450 - URR1B DNA MER1_type 0 225 1 1 1325 22 0 0 0 chr6 97074228 97074250 -52442787 + AT_rich Low_complexity Low_complexity 1 22 0 1 1325 479 70 0 27 chr6 97074304 97074377 -52442660 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 1 1325 225 163 82 0 chr6 97074843 97074892 -52442145 + tRNA-Ala-GCY_ tRNA tRNA 2 54 -21 1 1325 619 197 237 2 chr6 97075099 97075276 -52441761 + ID_B1 SINE B4 6 220 -4 1 1325 1125 223 0 0 chr6 97076121 97076327 -52440710 - B3 SINE B2 -10 206 1 1 1325 188 298 0 0 chr6 97076386 97076433 -52440604 + MIRm SINE MIR 12 58 -218 1 1325 414 198 25 0 chr6 97076716 97076797 -52440240 + RSINE1 SINE B4 47 129 -36 1 1325 226 264 132 94 chr6 97076858 97076872 -52440165 + B4A SINE B4 82 138 -154 1 1325 739 139 98 0 chr6 97076872 97076994 -52440043 + B1_Mus2 SINE Alu 9 142 -5 1 1325 226 264 132 94 chr6 97076994 97077017 -52440020 + B4A SINE B4 139 246 -46 1 1325 672 124 0 0 chr6 97077017 97077122 -52439915 + (GA)n Simple_repeat Simple_repeat 1 105 0 1 1325 217 280 0 0 chr6 97077123 97077173 -52439864 + GA-rich Low_complexity Low_complexity 4 53 0 1 1325 729 39 96 0 chr6 97077178 97077282 -52439755 - BC1_Mm scRNA scRNA -37 115 2 1 1325 385 296 79 0 chr6 97077614 97077645 -52439392 - RSINE1 SINE B4 0 165 130 1 1325 294 29 0 0 chr6 97077645 97077680 -52439357 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1325 385 296 79 0 chr6 97077680 97077800 -52439237 - RSINE1 SINE B4 -36 129 3 1 1325 432 0 0 0 chr6 97078789 97078837 -52438200 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1325 5740 142 5 2 chr6 97079004 97079930 -52437107 - L1_Mur2 LINE L1 -387 5490 4562 1 1325 2306 130 3 48 chr6 97079924 97080303 -52436734 - Lx2B LINE L1 -25 5861 5500 1 1325 3942 104 39 8 chr6 97080296 97080801 -52436236 + Lx2B LINE L1 5865 6383 -617 1 1325 337 0 62 0 chr6 97080801 97080849 -52436188 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 1 1325 3942 104 39 8 chr6 97080849 97080933 -52436104 + Lx2B LINE L1 6384 6470 -530 1 1325 288 0 0 0 chr6 97080933 97080965 -52436072 + (TAA)n Simple_repeat Simple_repeat 3 34 0 1 1325 702 229 125 0 chr6 97081090 97081282 -52435755 + B3 SINE B2 1 216 0 1 1325 213 65 0 0 chr6 97081697 97081728 -52435309 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 1 1325 283 157 14 14 chr6 97082085 97082156 -52434881 + CT-rich Low_complexity Low_complexity 3 73 0 1 1325 644 240 203 26 chr6 97082191 97082418 -52434619 - B4A SINE B4 -22 270 4 1 1325 565 198 19 9 chr6 97082453 97082560 -52434477 + PB1D10 SINE Alu 10 117 0 1 1325 333 349 146 17 chr6 97082588 97082827 -52434210 + MLT1F1 LTR MaLR 50 319 -250 1 1325 306 292 28 72 chr6 97083439 97083620 -52433417 + L1MC4a LINE L1 7709 7881 -1 1 1325 1318 92 54 0 chr6 97084021 97084206 -52432831 + B2_Mm2 SINE B2 1 195 0 1 1325 1127 201 0 23 chr6 97084492 97084711 -52432326 - B3 SINE B2 0 216 3 1 1325 544 269 13 33 chr6 97084737 97084887 -52432150 - ID_B1 SINE B4 -4 220 74 1 1325 300 158 0 0 chr6 97085501 97085558 -52431479 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1325 255 132 0 0 chr6 97085562 97085600 -52431437 + B1F SINE Alu 99 136 -13 1 1325 363 177 10 20 chr6 97085614 97085712 -52431325 + (TA)n Simple_repeat Simple_repeat 2 98 0 1 1325 338 297 10 0 chr6 97085716 97085817 -52431220 - B1F1 SINE Alu -47 102 1 1 1325 735 288 0 0 chr6 97085851 97086014 -52431023 - RSINE1 SINE B4 0 165 3 1 1325 833 0 0 10 chr6 97086123 97086130 -52430907 + (GAA)n Simple_repeat Simple_repeat 3 9 0 1 1325 1149 61 0 32 chr6 97086130 97086316 -52430721 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1325 833 0 0 10 chr6 97086316 97086406 -52430631 + (GAA)n Simple_repeat Simple_repeat 1 90 0 1 1325 211 192 0 19 chr6 97086821 97086874 -52430163 + RSINE1 SINE B4 8 59 -106 1 1325 8219 17 0 0 chr6 97086888 97087811 -52429226 + L1Md_T LINE L1 4664 5586 -297 1 1325 8152 57 0 0 chr6 97087811 97088840 -52428197 + L1Md_T LINE L1 5587 6582 0 1 1325 228 119 305 0 chr6 97088844 97088903 -52428134 + RSINE1 SINE B4 79 155 -10 1 1325 325 262 139 9 chr6 97089040 97089148 -52427889 + MTEa LTR MaLR 1 122 -237 1 1325 1415 101 5 0 chr6 97089303 97089492 -52427545 - B2_Mm2 SINE B2 -5 190 1 1 1325 237 182 34 68 chr6 97089561 97089620 -52427417 + RLTR20D LTR ERVK 75 131 -437 1 1325 204 40 0 0 chr6 97089622 97089647 -52427390 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1325 462 221 127 41 chr6 97089903 97090079 -52426958 + MTEa LTR MaLR 189 378 -1 1 1325 246 362 21 0 chr6 97090133 97090227 -52426810 + MLT1B LTR MaLR 214 309 -81 1 1325 450 0 0 0 chr6 97090378 97090428 -52426609 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1325 508 269 101 74 chr6 97090666 97090883 -52426154 - B4A SINE B4 -22 270 48 1 1325 257 169 17 0 chr6 97091086 97091145 -52425892 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1325 1704 131 35 40 chr6 97091145 97091550 -52425487 - RMER17C LTR ERVK 0 410 8 1 1325 351 0 0 0 chr6 97091573 97091612 -52425425 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1325 281 250 0 68 chr6 97092107 97092210 -52424827 + G-rich Low_complexity Low_complexity 4 99 0 1 1325 423 0 0 0 chr6 97092422 97092469 -52424568 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1325 253 294 59 0 chr6 97092641 97092726 -52424311 + PB1D7 SINE Alu 20 109 -11 1 1325 889 216 55 10 chr6 97092976 97093177 -52423860 - B3 SINE B2 -5 211 2 1 1325 1028 59 0 0 chr6 97093261 97093396 -52423641 - B1_Mus2 SINE Alu -10 137 3 1 1325 767 140 14 22 chr6 97095528 97095667 -52421370 + B1_Mur4 SINE Alu 9 146 -4 1 1325 452 161 58 0 chr6 97095675 97095762 -52421275 + B1_Mur2 SINE Alu 1 92 -57 1 1325 301 179 30 0 chr6 97095873 97095940 -52421097 + ID4_ SINE ID 2 70 -13 1 1325 339 213 27 0 chr6 97096026 97096101 -52420936 - L2a LINE L2 -1 3425 3349 1 1325 216 158 0 0 chr6 97096226 97096264 -52420773 + GA-rich Low_complexity Low_complexity 3 40 0 1 1325 22 0 0 0 chr6 97097126 97097148 -52419889 + AT_rich Low_complexity Low_complexity 1 22 0 1 1325 644 73 0 18 chr6 97097152 97097263 -52419774 + L1_Mus4 LINE L1 6522 6630 -6 1 1325 311 76 10 39 chr6 97097277 97097340 -52419697 + B1_Mus2 SINE Alu 52 142 -5 1 1325 314 296 22 43 chr6 97099558 97099696 -52417341 + RSINE1 SINE B4 3 137 -28 1 1325 29 0 0 0 chr6 97099887 97099916 -52417121 + AT_rich Low_complexity Low_complexity 1 29 0 1 1325 274 345 28 83 chr6 97099958 97100138 -52416899 + B4 SINE B4 29 198 -94 1 1325 534 170 0 43 chr6 97100047 97100139 -52416898 + B1_Mur1 SINE Alu 23 110 -39 1 1325 602 195 81 86 chr6 97100271 97100445 -52416592 - B3 SINE B2 -9 186 14 1 1325 22 35 0 0 chr6 97100876 97100905 -52416132 + AT_rich Low_complexity Low_complexity 1 29 0 1 1325 563 149 175 0 chr6 97100919 97101033 -52416004 - B1_Mus2 SINE Alu -3 144 11 1 1325 339 240 41 0 chr6 97101324 97101445 -52415592 + (CA)n Simple_repeat Simple_repeat 2 127 0 1 1325 276 53 0 0 chr6 97102089 97102127 -52414910 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1325 1069 154 6 0 chr6 97102310 97102492 -52414545 - B3 SINE B2 -6 210 28 1 1325 227 192 0 0 chr6 97102791 97102843 -52414194 + T-rich Low_complexity Low_complexity 1 52 0 1 1325 227 237 17 17 chr6 97103693 97103753 -52413284 - Tigger7 DNA MER2_type -6 2485 2426 1 1325 278 324 218 8 chr6 97103839 97104091 -52412946 - Tigger7 DNA MER2_type -2163 328 24 1 1325 657 69 0 0 chr6 97105033 97105120 -52411917 + (A)n Simple_repeat Simple_repeat 1 87 0 1 1325 26 111 0 0 chr6 97105122 97105239 -52411798 + AT_rich Low_complexity Low_complexity 1 117 0 1 1325 260 267 0 39 chr6 97105660 97105738 -52411299 + ID2 SINE ID 1 75 -8 1 1325 959 74 7 0 chr6 97105752 97105887 -52411150 + B1_Mus1 SINE Alu 13 148 0 1 1325 198 143 0 0 chr6 97105890 97105925 -52411112 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1325 339 223 114 63 chr6 97105933 97106091 -52410946 + B4A SINE B4 106 271 -21 2 1325 346 85 34 0 chr6 97106106 97106165 -52410872 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1325 1453 58 27 0 chr6 97106496 97106684 -52410353 - B2_Mm1t SINE B2 0 193 1 2 1325 303 83 0 0 chr6 97107965 97108013 -52409024 - Lx3_Mus LINE L1 0 7009 6962 2 1325 624 50 59 10 chr6 97108637 97108738 -52408299 + B2_Mm2 SINE B2 84 189 -6 2 1325 459 233 36 79 chr6 97108748 97108888 -52408149 + RSINE1 SINE B4 3 136 -29 2 1325 22 35 0 0 chr6 97108894 97108923 -52408114 + AT_rich Low_complexity Low_complexity 1 29 0 2 1325 939 143 114 0 chr6 97108928 97109103 -52407934 + B2_Mm2 SINE B2 1 195 0 2 1325 370 136 0 0 chr6 97109315 97109374 -52407663 + B1_Mus1 SINE Alu 1 59 -89 2 1325 258 81 0 0 chr6 97109376 97109413 -52407624 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1325 629 164 0 0 chr6 97109413 97109517 -52407520 + B1_Mur4 SINE Alu 41 144 -6 2 1325 488 264 216 25 chr6 97109549 97109794 -52407243 + B4A SINE B4 1 292 0 2 1325 384 179 0 0 chr6 97109952 97110019 -52407018 + B1_Mus1 SINE Alu 1 67 -81 2 1325 195 204 0 0 chr6 97110861 97110905 -52406132 + GA-rich Low_complexity Low_complexity 2 45 0 2 1325 30 0 0 0 chr6 97111093 97111123 -52405914 + AT_rich Low_complexity Low_complexity 1 30 0 2 1325 888 274 14 46 chr6 97111884 97112102 -52404935 + ID_B1 SINE B4 3 213 -11 2 1325 265 302 129 7 chr6 97112125 97112265 -52404772 + L1MD LINE L1 5196 5352 -794 2 1325 545 280 109 51 chr6 97112361 97112655 -52404382 + L1MD LINE L1 5338 5648 -594 2 1325 23 33 0 0 chr6 97112778 97112808 -52404229 + AT_rich Low_complexity Low_complexity 1 30 0 2 1325 1137 241 17 8 chr6 97112985 97113224 -52403813 + B4A SINE B4 50 290 -2 2 1325 180 0 0 0 chr6 97113710 97113730 -52403307 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1325 255 242 123 66 chr6 97114419 97114525 -52402512 + B1F1 SINE Alu 38 149 0 2 1325 237 321 0 0 chr6 97114536 97114592 -52402445 + PB1 SINE Alu 3 58 -69 2 1325 1111 145 0 58 chr6 97115048 97115253 -52401784 + B2_Mm2 SINE B2 3 195 0 2 1325 34 65 0 0 chr6 97115295 97115357 -52401680 + AT_rich Low_complexity Low_complexity 1 62 0 2 1325 261 0 0 0 chr6 97115366 97115395 -52401642 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1325 887 224 51 6 chr6 97115395 97115570 -52401467 - B3A SINE B2 -14 184 2 2 1325 1529 77 0 10 chr6 97115605 97115801 -52401236 - B2_Mm2 SINE B2 0 195 2 2 1325 270 317 0 0 chr6 97116422 97116506 -52400531 + ID2 SINE ID 12 95 -57 2 1325 238 129 32 0 chr6 97116565 97116627 -52400410 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1325 808 182 23 0 chr6 97116660 97116792 -52400245 - B1_Mus1 SINE Alu -12 136 2 2 1325 314 170 0 0 chr6 97117685 97117738 -52399299 + B3 SINE B2 154 206 -10 2 1325 876 89 0 0 chr6 97117740 97117863 -52399174 + (GAAA)n Simple_repeat Simple_repeat 4 126 0 2 1325 231 250 0 0 chr6 97117864 97117908 -52399129 + G-rich Low_complexity Low_complexity 1 44 0 2 1325 707 108 9 0 chr6 97117909 97118020 -52399017 + (GAGAA)n Simple_repeat Simple_repeat 4 115 0 2 1325 345 288 207 7 chr6 97118331 97118471 -52398566 + ORR1E LTR MaLR 4 171 -188 2 1325 207 293 0 35 chr6 97120030 97120115 -52396922 + CT-rich Low_complexity Low_complexity 5 86 0 2 1325 306 313 61 0 chr6 97120126 97120225 -52396812 - PB1 SINE Alu -22 105 1 2 1325 448 301 50 25 chr6 97120962 97121122 -52395915 + RSINE1 SINE B4 2 165 0 2 1325 285 278 98 45 chr6 97121347 97121479 -52395558 + MER20 DNA MER1_type 76 214 -5 2 1325 683 295 35 58 chr6 97121792 97122051 -52394986 - B4A SINE B4 -39 253 1 2 1325 244 265 65 84 chr6 97122453 97122560 -52394477 - PB1D10 SINE Alu -11 106 2 2 1325 245 274 32 0 chr6 97122623 97122685 -52394352 - ID4 SINE ID -17 66 3 2 1325 531 138 0 0 chr6 97123125 97123205 -52393832 - B3A SINE B2 -118 80 1 2 1325 1125 82 127 0 chr6 97124093 97124251 -52392786 + B2_Mm1t SINE B2 2 179 -14 2 165 380 71 32 18 chr6 97124264 97124375 -52392662 + B2_Mm2 SINE B2 47 194 -1 2 1326 275 308 38 0 chr6 97124630 97124864 -52392173 + (TA)n Simple_repeat Simple_repeat 1 242 0 2 1326 360 77 0 0 chr6 97124936 97124988 -52392049 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1326 267 304 138 54 chr6 97128421 97128588 -52388449 + MIRc SINE MIR 11 191 -77 2 1326 31 82 0 0 chr6 97129029 97129102 -52387935 + GC_rich Low_complexity Low_complexity 1 73 0 2 1326 570 325 121 29 chr6 97129550 97129823 -52387214 + MLT1A0 LTR MaLR 68 365 0 2 1326 878 179 212 36 chr6 97130052 97130330 -52386707 + Lx9 LINE L1 7297 7623 -21 2 1326 435 271 137 23 chr6 97130341 97130560 -52386477 - MLT1C LTR MaLR -8 459 216 2 1326 483 18 0 0 chr6 97130643 97130699 -52386338 + (GGGA)n Simple_repeat Simple_repeat 4 59 0 2 1326 659 192 31 31 chr6 97131960 97132089 -52384948 + B1_Mur2 SINE Alu 20 148 -1 2 1326 4888 128 60 27 chr6 97132218 97133114 -52383923 + Lx2 LINE L1 6070 6995 -2 2 1326 22 0 0 0 chr6 97133115 97133137 -52383900 + AT_rich Low_complexity Low_complexity 1 22 0 2 1326 261 0 0 0 chr6 97133312 97133341 -52383696 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1326 1207 65 0 0 chr6 97133341 97133479 -52383558 - B1_Mus1 SINE Alu -9 139 2 2 1326 226 219 92 15 chr6 97133522 97133587 -52383450 + ID4 SINE ID 5 74 -9 2 1326 24 0 0 0 chr6 97133873 97133897 -52383140 + AT_rich Low_complexity Low_complexity 1 24 0 2 1326 21 36 0 0 chr6 97134589 97134617 -52382420 + AT_rich Low_complexity Low_complexity 1 28 0 2 1326 23 0 0 0 chr6 97134981 97135004 -52382033 + AT_rich Low_complexity Low_complexity 1 23 0 2 1326 328 247 12 49 chr6 97135070 97135151 -52381886 + B1_Mus2 SINE Alu 62 139 -8 2 1326 227 186 23 0 chr6 97135239 97135282 -52381755 + GA-rich Low_complexity Low_complexity 4 47 0 2 1326 25 31 0 0 chr6 97136356 97136388 -52380649 + AT_rich Low_complexity Low_complexity 1 32 0 2 1326 477 0 0 0 chr6 97136776 97136829 -52380208 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1326 204 333 0 0 chr6 97138157 97138211 -52378826 + L3 LINE CR1 3359 3412 -1077 2 1326 1056 205 28 23 chr6 97138724 97138939 -52378098 + B3 SINE B2 1 216 0 2 1326 954 91 28 0 chr6 97139294 97139437 -52377600 - URR1A DNA MER1_type -2 224 78 2 1326 37 52 0 0 chr6 97139670 97139728 -52377309 + AT_rich Low_complexity Low_complexity 1 58 0 2 1326 321 304 296 0 chr6 97140340 97140465 -52376572 - RSINE1 SINE B4 -2 163 2 2 1326 672 250 32 43 chr6 97140582 97140770 -52376267 + B3A SINE B2 1 186 -12 2 1326 268 247 96 0 chr6 97141615 97141688 -52375349 - PB1D10 SINE Alu -7 110 31 2 1326 210 163 20 0 chr6 97142341 97142385 -52374652 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 2 1326 1224 34 7 39 chr6 97142385 97142538 -52374499 - B1_Mus1 SINE Alu 0 148 1 2 1326 252 309 54 31 chr6 97143172 97143302 -52373735 + Lx7 LINE L1 7564 7696 0 2 1326 333 68 0 0 chr6 97143335 97143379 -52373658 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1326 268 250 269 11 chr6 97143612 97143705 -52373332 + PB1D9 SINE Alu 4 120 0 2 1326 1220 62 7 0 chr6 97143705 97143851 -52373186 + B1_Mus2 SINE Alu 1 147 0 2 1326 552 240 101 0 chr6 97144510 97144639 -52372398 - RSINE1 SINE B4 -22 143 2 2 1326 400 254 69 14 chr6 97144640 97144751 -52372286 - B1F SINE Alu -4 145 1 2 1326 486 317 134 14 chr6 97144779 97145205 -52371832 - L1MD2 LINE L1 -349 6010 5534 2 1326 327 201 50 0 chr6 97145293 97145370 -52371667 - ID4_ SINE ID -61 91 8 2 1326 226 200 109 0 chr6 97145381 97145436 -52371601 - PB1 SINE Alu -2 125 65 2 1326 266 221 221 0 chr6 97145487 97145573 -52371464 - L1MD2 LINE L1 -984 5375 5271 2 1326 580 304 48 5 chr6 97145578 97145786 -52371251 + MER2 DNA MER2_type 1 217 -128 2 1326 2414 97 25 0 chr6 97145813 97146132 -52370905 + ORR1A2 LTR MaLR 1 327 0 2 1326 288 257 100 0 chr6 97146177 97146247 -52370790 - ID4 SINE ID -3 80 4 2 1326 322 266 52 21 chr6 97146247 97146343 -52370694 + MER2 DNA MER2_type 247 345 0 2 1326 340 262 114 5 chr6 97146464 97146610 -52370427 - L1MD2 LINE L1 -1058 5088 4924 2 1326 414 0 0 0 chr6 97147056 97147102 -52369935 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1326 503 305 110 19 chr6 97147109 97147263 -52369774 - B3A SINE B2 -30 168 1 2 1326 603 277 0 14 chr6 97147523 97147662 -52369375 - B1F SINE Alu -9 140 4 2 1326 273 189 227 13 chr6 97147810 97147885 -52369152 - PB1D10 SINE Alu -1 116 26 2 1326 984 72 0 0 chr6 97148109 97148234 -52368803 + B1_Mus2 SINE Alu 2 126 -21 2 1326 24 77 0 0 chr6 97148319 97148371 -52368666 + AT_rich Low_complexity Low_complexity 1 52 0 2 1326 336 87 0 0 chr6 97148989 97149035 -52368002 + B2_Mm2 SINE B2 1 46 -149 2 1326 217 205 0 0 chr6 97149724 97149763 -52367274 + C-rich Low_complexity Low_complexity 1 39 0 2 1326 919 185 27 0 chr6 97150083 97150267 -52366770 + URR1B DNA MER1_type 37 225 0 2 1326 1098 81 211 0 chr6 97150549 97150710 -52366327 + B2_Mm2 SINE B2 1 195 0 2 1326 1076 204 38 24 chr6 97150900 97151111 -52365926 + B3 SINE B2 3 216 0 2 1326 23 0 0 0 chr6 97151612 97151635 -52365402 + AT_rich Low_complexity Low_complexity 1 23 0 2 1326 962 219 46 0 chr6 97152251 97152447 -52364590 + B3 SINE B2 12 216 0 2 1326 256 303 11 0 chr6 97152480 97152569 -52364468 - L1MEc LINE L1 -4308 2092 2003 3 1326 188 253 88 12 chr6 97154510 97154590 -52362447 + MIRb SINE MIR 163 248 -20 3 1326 21 0 0 0 chr6 97155676 97155697 -52361340 + GC_rich Low_complexity Low_complexity 1 21 0 3 1326 234 296 213 16 chr6 97156558 97156685 -52360352 + MIRb SINE MIR 44 195 -73 3 1326 663 13 0 0 chr6 97157032 97157108 -52359929 + (GAA)n Simple_repeat Simple_repeat 3 78 0 3 1326 250 222 26 50 chr6 97157114 97157215 -52359822 + B3 SINE B2 47 195 -21 3 1326 315 0 0 0 chr6 97157553 97157588 -52359449 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1326 796 196 0 28 chr6 97157589 97157731 -52359306 - B3A SINE B2 -50 148 11 3 1326 351 283 102 19 chr6 97158166 97158274 -52358763 - PB1 SINE Alu -2 125 9 3 1326 288 0 0 0 chr6 97158915 97158947 -52358090 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1326 337 296 109 23 chr6 97159036 97159164 -52357873 - B1F1 SINE Alu -5 144 6 3 1326 1157 202 5 5 chr6 97159322 97159526 -52357511 + B3 SINE B2 2 205 -11 3 1326 838 232 6 6 chr6 97159823 97159992 -52357045 + Lx6 LINE L1 6987 7155 -305 3 1326 351 0 0 0 chr6 97160436 97160475 -52356562 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1326 905 181 0 26 chr6 97162468 97162621 -52354416 + B1_Mur3 SINE Alu 1 149 0 3 1326 459 237 31 0 chr6 97163041 97163138 -52353899 + B1F SINE Alu 2 101 -48 3 1326 305 319 106 24 chr6 97163253 97163423 -52353614 - MIRb SINE MIR -1 267 84 3 1326 386 318 101 0 chr6 97163962 97164091 -52352946 + B1F SINE Alu 1 142 -7 3 1326 516 221 13 7 chr6 97164179 97164334 -52352703 + CT-rich Low_complexity Low_complexity 2 157 0 3 1326 360 0 0 0 chr6 97164365 97164405 -52352632 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1326 354 214 119 0 chr6 97164407 97164491 -52352546 - PB1D7 SINE Alu -13 107 14 3 1326 247 303 40 0 chr6 97164424 97164500 -52352537 - B4A SINE B4 -124 168 90 3 1326 1982 160 53 42 chr6 97165091 97165470 -52351567 - ORR1C2 LTR MaLR 0 384 2 3 1326 290 317 90 16 chr6 97165662 97165784 -52351253 + MER5A1 DNA MER1_type 26 156 -10 3 1326 662 149 74 0 chr6 97167408 97167529 -52349508 + B1_Mur4 SINE Alu 1 130 -20 3 1326 402 74 0 0 chr6 97167534 97167588 -52349449 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 3 1326 207 0 0 0 chr6 97167698 97167721 -52349316 + (TATAA)n Simple_repeat Simple_repeat 1 23 0 3 1326 279 141 0 0 chr6 97167918 97167982 -52349055 + (T)n Simple_repeat Simple_repeat 1 64 0 3 1326 281 250 40 0 chr6 97168042 97168118 -52348919 + ID4_ SINE ID 2 80 -3 3 1326 407 194 11 0 chr6 97168310 97168403 -52348634 + CT-rich Low_complexity Low_complexity 4 97 0 3 1326 500 230 105 9 chr6 97168419 97168533 -52348504 - B3 SINE B2 -86 130 6 3 1326 718 73 41 0 chr6 97168972 97169095 -52347942 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 3 1326 623 132 0 28 chr6 97169097 97169206 -52347831 - B1_Mur4 SINE Alu 0 150 45 3 1326 946 233 154 8 chr6 97169622 97169856 -52347181 + B4A SINE B4 25 292 0 3 1326 373 279 113 7 chr6 97170274 97170415 -52346622 + RSINE1 SINE B4 3 158 -7 3 1326 342 67 0 0 chr6 97170448 97170493 -52346544 + (GGA)n Simple_repeat Simple_repeat 3 47 0 3 1326 1068 56 0 33 chr6 97170496 97170680 -52346357 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 1326 228 186 0 0 chr6 97170946 97171005 -52346032 + C-rich Low_complexity Low_complexity 1 59 0 3 1326 408 40 0 0 chr6 97172272 97172322 -52344715 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1326 745 271 31 9 chr6 97173670 97173897 -52343140 - B4 SINE B4 -34 258 27 3 1326 547 226 9 0 chr6 97174087 97174202 -52342835 + PB1D7 SINE Alu 2 117 -3 3 1326 306 67 0 0 chr6 97174233 97174278 -52342759 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1326 180 0 0 0 chr6 97174279 97174299 -52342738 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1326 376 229 105 48 chr6 97174429 97174553 -52342484 + ID_B1 SINE B4 94 224 0 3 1326 324 222 29 52 chr6 97174941 97175072 -52341965 + PB1D10 SINE Alu 1 120 0 3 1326 218 81 27 0 chr6 97175074 97175111 -52341926 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 3 1326 607 274 17 117 chr6 97175119 97175350 -52341687 + ID_B1 SINE B4 6 213 -11 3 1326 422 143 0 13 chr6 97175350 97175428 -52341609 + GA-rich Low_complexity Low_complexity 2 78 0 3 1326 1199 61 7 0 chr6 97175570 97175717 -52341320 - B1_Mus1 SINE Alu 0 148 1 3 1326 189 0 0 0 chr6 97176200 97176221 -52340816 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 3 1326 582 252 0 75 chr6 97176536 97176695 -52340342 - B1_Mur1 SINE Alu 0 149 3 3 1326 339 206 0 14 chr6 97176860 97176934 -52340103 + PB1D10 SINE Alu 11 83 -34 3 1326 278 192 0 0 chr6 97176934 97176986 -52340051 - ORR1D1 LTR MaLR 0 374 323 3 1326 823 228 160 111 chr6 97176996 97177528 -52339509 - RMER4B LTR ERVK -11 574 17 3 1326 1025 218 109 20 chr6 97177534 97177838 -52339199 - ORR1D1 LTR MaLR -43 331 1 3 1326 1166 57 0 0 chr6 97177881 97178021 -52339016 + B1_Mus1 SINE Alu 1 140 -8 3 1326 1210 34 0 33 chr6 97178847 97178986 -52338051 + B1_Mus2 SINE Alu 1 139 -8 3 1326 279 0 0 0 chr6 97178986 97179017 -52338020 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1326 1210 34 0 33 chr6 97179017 97179029 -52338008 + B1_Mus2 SINE Alu 140 147 0 3 1326 586 198 38 0 chr6 97179221 97179327 -52337710 - PB1D10 SINE Alu -7 110 1 3 1326 537 273 30 8 chr6 97180009 97180117 -52336920 + B3 SINE B2 71 182 -34 3 1326 267 31 0 0 chr6 97180117 97180149 -52336888 + (CATA)n Simple_repeat Simple_repeat 3 34 0 3 1326 537 273 30 8 chr6 97180149 97180173 -52336864 + B3 SINE B2 183 206 -10 3 1326 265 254 57 41 chr6 97181136 97181259 -52335778 - B4A SINE B4 -112 180 56 3 1326 221 163 20 0 chr6 97181324 97181373 -52335664 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 3 1326 500 157 185 0 chr6 97181395 97181503 -52335534 - RSINE1 SINE B4 -36 129 2 3 1326 216 0 0 0 chr6 97181790 97181814 -52335223 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1326 529 226 96 79 chr6 97182139 97182317 -52334720 + B3A SINE B2 2 182 -16 3 1326 243 0 0 0 chr6 97183428 97183455 -52333582 + (GA)n Simple_repeat Simple_repeat 1 27 0 3 1326 2241 120 6 0 chr6 97184195 97184520 -52332517 + ORR1A2 LTR MaLR 1 327 0 3 1326 529 175 58 64 chr6 97184571 97184725 -52332312 - B1_Mus2 SINE Alu -1 149 5 3 1326 1425 227 92 36 chr6 97184850 97184894 -52332143 - MTE2b LTR MaLR -2 377 338 3 1326 1539 141 111 179 chr6 97184894 97185301 -52331736 - RLTR30 LTR ERV1 0 379 1 3 1326 1425 227 92 36 chr6 97185301 97185613 -52331424 - MTE2b LTR MaLR -42 337 1 3 1326 23 33 0 0 chr6 97185653 97185683 -52331354 + AT_rich Low_complexity Low_complexity 1 30 0 3 1326 385 268 150 9 chr6 97185686 97185799 -52331238 - RSINE1 SINE B4 -34 131 3 3 1326 297 345 26 60 chr6 97185886 97186003 -52331034 + RSINE1 SINE B4 53 165 0 3 1326 360 228 131 69 chr6 97186190 97186209 -52330828 - CYRA11_Mm Unknown Y-chromosome -209 408 380 3 1326 708 161 140 0 chr6 97186209 97186352 -52330685 + URR1B DNA MER1_type 1 163 -62 3 1326 354 136 0 57 chr6 97186782 97186852 -52330185 + URR1B DNA MER1_type 160 225 0 3 1326 317 109 0 15 chr6 97186949 97187014 -52330023 + (GAAAA)n Simple_repeat Simple_repeat 4 67 0 3 1326 750 175 7 0 chr6 97187018 97187155 -52329882 + B1_Mus1 SINE Alu 10 147 -1 3 1326 609 58 0 0 chr6 97187644 97187730 -52329307 + (TG)n Simple_repeat Simple_repeat 2 87 0 3 1326 1496 222 30 25 chr6 97187993 97188357 -52328680 + MTEa LTR MaLR 6 371 -8 3 1326 222 37 0 0 chr6 97188882 97188909 -52328128 + (GAA)n Simple_repeat Simple_repeat 1 27 0 3 1326 407 106 0 15 chr6 97189323 97189390 -52327647 + (GGA)n Simple_repeat Simple_repeat 2 67 0 3 1326 840 183 47 0 chr6 97189433 97189602 -52327435 + B3A SINE B2 4 180 -18 3 1326 745 293 83 28 chr6 97189638 97189891 -52327146 + B4 SINE B4 1 267 -25 3 1326 297 0 0 0 chr6 97189897 97189930 -52327107 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1326 1014 210 53 14 chr6 97190651 97190859 -52326178 + B3 SINE B2 1 216 0 3 1326 357 281 11 0 chr6 97191226 97191315 -52325722 + ID_B1 SINE B4 82 171 -53 3 1326 363 44 0 0 chr6 97191495 97191540 -52325497 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1326 1195 56 0 0 chr6 97191597 97191739 -52325298 + B1_Mm SINE Alu 4 145 -2 3 1326 1574 47 21 0 chr6 97192826 97193017 -52324020 + B2_Mm2 SINE B2 1 195 0 3 1326 1189 74 0 0 chr6 97193020 97193168 -52323869 + B1_Mus1 SINE Alu 1 148 0 3 1326 381 93 0 0 chr6 97193172 97193226 -52323811 + (A)n Simple_repeat Simple_repeat 1 54 0 3 1326 281 259 0 0 chr6 97193484 97193542 -52323495 + ID SINE ID 27 84 -140 3 1326 315 0 0 0 chr6 97193811 97193846 -52323191 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 1326 1504 181 127 25 chr6 97194083 97194446 -52322591 - MTD LTR MaLR -7 412 13 3 1326 282 56 0 0 chr6 97194473 97194509 -52322528 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1326 207 204 0 0 chr6 97195298 97195342 -52321695 + (TAG)n Simple_repeat Simple_repeat 1 44 0 3 1326 394 302 0 16 chr6 97195353 97195474 -52321563 + B4A SINE B4 1 119 -173 3 1326 34 65 0 0 chr6 97196032 97196094 -52320943 + AT_rich Low_complexity Low_complexity 1 62 0 3 1326 203 321 57 43 chr6 97196648 97196788 -52320249 + MIR SINE MIR 67 208 -54 3 1326 423 228 357 36 chr6 97196924 97197092 -52319945 + ID_B1 SINE B4 1 222 -2 3 1326 354 211 0 0 chr6 97198322 97198431 -52318606 + CT-rich Low_complexity Low_complexity 2 110 0 4 1326 677 241 13 6 chr6 97198648 97198807 -52318230 + B3A SINE B2 1 160 -38 4 1326 1432 66 16 0 chr6 97198889 97199072 -52317965 + B2_Mm1a SINE B2 3 188 -5 4 1326 427 242 169 64 chr6 97199093 97199327 -52317710 + B4A SINE B4 2 263 -29 4 1326 252 86 0 0 chr6 97199327 97199362 -52317675 + (TCTCCC)n Simple_repeat Simple_repeat 4 38 0 4 1326 476 143 10 0 chr6 97199363 97199461 -52317576 + (CA)n Simple_repeat Simple_repeat 2 100 0 4 1326 638 200 27 33 chr6 97199482 97199632 -52317405 + B1_Mur1 SINE Alu 1 149 0 4 1326 256 312 97 18 chr6 97200089 97200131 -52316906 - MER2 DNA MER2_type -219 126 87 4 1326 186 43 0 0 chr6 97200131 97200154 -52316883 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1326 256 312 97 18 chr6 97200154 97200225 -52316812 - MER2 DNA MER2_type -259 86 5 4 1326 294 29 0 0 chr6 97200269 97200304 -52316733 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1326 551 13 0 49 chr6 97200304 97200385 -52316652 - BC1_Mm scRNA scRNA -74 78 2 4 1326 939 123 7 7 chr6 97200531 97200678 -52316359 + B1_Mur4 SINE Alu 2 148 -2 4 1326 180 208 0 153 chr6 97200750 97200835 -52316202 + MIRc SINE MIR 2 73 -195 4 1326 363 60 0 0 chr6 97201563 97201613 -52315424 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1326 23 33 0 0 chr6 97201614 97201644 -52315393 + AT_rich Low_complexity Low_complexity 1 30 0 4 1326 21 0 0 0 chr6 97202126 97202147 -52314890 + AT_rich Low_complexity Low_complexity 1 21 0 4 1326 772 164 0 54 chr6 97203656 97203804 -52313233 + B1_Mur2 SINE Alu 1 140 -9 4 1326 28 29 0 0 chr6 97203938 97203973 -52313064 + AT_rich Low_complexity Low_complexity 1 35 0 4 1326 878 110 1 22 chr6 97203973 97204125 -52312912 - B1_Mus1 SINE Alu 0 150 1 4 1326 272 341 73 7 chr6 97204397 97204533 -52312504 - B1F SINE Alu -2 147 3 4 1326 473 306 16 52 chr6 97204577 97204825 -52312212 - L1ME4a LINE L1 -275 5849 5611 4 1326 318 148 0 0 chr6 97204886 97204940 -52312097 + (CATA)n Simple_repeat Simple_repeat 3 56 0 4 1326 1739 144 84 9 chr6 97204957 97205280 -52311757 + ORR1B1 LTR MaLR 40 386 -8 4 1326 1011 73 58 0 chr6 97205384 97205521 -52311516 + B1_Mus1 SINE Alu 4 148 0 4 1326 311 53 69 17 chr6 97205672 97205730 -52311307 - ORR1A4 LTR MaLR -268 61 1 4 1326 207 186 0 0 chr6 97205740 97205783 -52311254 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 1326 193 217 49 158 chr6 97206492 97206574 -52310463 + MER5A DNA MER1_type 93 165 -24 4 1326 230 257 148 28 chr6 97206734 97206842 -52310195 - L2a LINE L2 -16 3410 3290 4 1326 237 384 82 8 chr6 97207101 97207235 -52309802 - L2 LINE L2 -529 2890 2747 4 1326 217 100 20 20 chr6 97207256 97207307 -52309730 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1326 1191 74 0 0 chr6 97207311 97207459 -52309578 + B1_Mus1 SINE Alu 1 148 0 4 1326 183 42 0 0 chr6 97207465 97207489 -52309548 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1326 235 294 11 23 chr6 97207722 97207809 -52309228 + GA-rich Low_complexity Low_complexity 1 86 0 4 1326 180 176 0 0 chr6 97208201 97208235 -52308802 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1326 705 162 5 43 chr6 97208343 97208530 -52308507 + CT-rich Low_complexity Low_complexity 1 180 0 4 1326 266 73 24 0 chr6 97208536 97208577 -52308460 + (TCC)n Simple_repeat Simple_repeat 3 44 0 4 1326 420 305 44 28 chr6 97208719 97208901 -52308136 - RMER30 DNA MER1_type 0 202 18 4 1326 951 227 39 5 chr6 97209690 97209894 -52307143 + B3 SINE B2 4 214 -2 4 1326 22 35 0 0 chr6 97209895 97209924 -52307113 + AT_rich Low_complexity Low_complexity 1 29 0 4 1326 423 329 0 0 chr6 97210038 97210178 -52306859 + (CTG)n Simple_repeat Simple_repeat 3 142 0 4 1326 232 240 66 0 chr6 97210394 97210480 -52306557 - B1F1 SINE Alu -13 107 14 4 1326 578 241 120 154 chr6 97210560 97210632 -52306405 - B4 SINE B4 -2 290 214 4 1326 423 0 0 0 chr6 97210632 97210679 -52306358 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 4 1326 578 241 120 154 chr6 97210679 97210776 -52306261 - B4 SINE B4 -79 213 91 4 1326 228 43 65 0 chr6 97210776 97210822 -52306215 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 4 1326 578 241 120 154 chr6 97210822 97210950 -52306087 - B4 SINE B4 -202 90 2 4 1326 342 0 0 0 chr6 97211015 97211053 -52305984 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1326 282 56 0 0 chr6 97211054 97211090 -52305947 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1326 654 150 9 0 chr6 97211090 97211203 -52305834 + B1_Mur3 SINE Alu 36 149 0 4 1326 474 18 0 0 chr6 97211267 97211322 -52305715 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1326 541 265 99 27 chr6 97211391 97211612 -52305425 + L1MB2 LINE L1 5627 5863 -308 4 1326 518 147 42 10 chr6 97211838 97211934 -52305103 + B1_Mur2 SINE Alu 51 149 0 4 1326 454 171 0 0 chr6 97211944 97212020 -52305017 + B1_Mur4 SINE Alu 55 130 -20 4 1326 2163 154 8 3 chr6 97212275 97212645 -52304392 - RLTR30 LTR ERV1 0 379 8 4 1326 230 242 15 29 chr6 97212659 97212727 -52304310 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 4 1326 459 252 0 10 chr6 97212744 97212848 -52304189 + ID_B1 SINE B4 109 211 -13 4 1326 345 304 123 24 chr6 97212871 97213267 -52303770 + L1ME3 LINE L1 5747 6178 -266 4 1326 31 0 0 0 chr6 97213598 97213629 -52303408 + AT_rich Low_complexity Low_complexity 1 31 0 4 1326 351 0 0 0 chr6 97213726 97213765 -52303272 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4 1326 910 80 0 0 chr6 97213766 97213891 -52303146 + B2_Mm2 SINE B2 1 125 -70 4 1326 1007 123 56 45 chr6 97213914 97214092 -52302945 - B2_Mm2 SINE B2 -14 181 2 4 1326 265 236 0 18 chr6 97214257 97214313 -52302724 + polypyrimidine Low_complexity Low_complexity 3 57 0 4 1326 24 0 0 0 chr6 97214568 97214592 -52302445 + AT_rich Low_complexity Low_complexity 1 24 0 4 1326 198 0 0 0 chr6 97214794 97214816 -52302221 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4 1326 357 43 0 0 chr6 97215739 97215786 -52301251 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1326 22 35 0 0 chr6 97216017 97216046 -52300991 + AT_rich Low_complexity Low_complexity 1 29 0 4 1326 21 36 0 0 chr6 97216685 97216713 -52300324 + AT_rich Low_complexity Low_complexity 1 28 0 4 1326 261 0 0 0 chr6 97217103 97217132 -52299905 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1326 379 322 60 0 chr6 97217389 97217538 -52299499 + RSINE1 SINE B4 1 158 -7 4 1326 284 78 39 0 chr6 97218197 97218248 -52298789 + (TCTCTG)n Simple_repeat Simple_repeat 6 58 0 4 1326 360 0 0 0 chr6 97218720 97218760 -52298277 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 4 1326 902 138 0 0 chr6 97218760 97218890 -52298147 - B1_Mus2 SINE Alu -13 134 5 4 1326 377 20 0 20 chr6 97220496 97220547 -52296490 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1326 432 248 47 9 chr6 97220555 97220661 -52296376 - RSINE1 SINE B4 -13 152 43 4 1326 303 286 44 9 chr6 97220674 97220787 -52296250 - B1F SINE Alu -15 134 18 4 1326 1138 244 72 20 chr6 97220966 97221038 -52295999 - MTE2b LTR MaLR -39 340 267 4 1326 1207 216 165 21 chr6 97221038 97221365 -52295672 - ORR1D1 LTR MaLR 0 374 1 4 1326 1138 244 72 20 chr6 97221365 97221597 -52295440 - MTE2b LTR MaLR -113 266 20 4 1326 238 215 392 42 chr6 97221727 97221867 -52295170 - B3A SINE B2 0 216 28 4 1326 478 283 7 14 chr6 97221945 97222085 -52294952 + B1_Mur1 SINE Alu 6 144 -5 4 1326 187 103 0 49 chr6 97222085 97222126 -52294911 + GA-rich Low_complexity Low_complexity 6 44 0 4 1326 809 76 0 30 chr6 97222168 97222303 -52294734 + (GAA)n Simple_repeat Simple_repeat 1 131 0 4 1326 303 366 8 8 chr6 97222687 97222811 -52294226 - MLT1C LTR MaLR -56 411 288 4 1326 5115 138 29 26 chr6 97222996 97223885 -52293152 - RMER19B LTR ERVK -6 896 5 4 1326 486 335 66 28 chr6 97223907 97224193 -52292844 + MLT1C LTR MaLR 132 428 -39 4 1326 752 206 0 11 chr6 97224283 97224465 -52292572 + CT-rich Low_complexity Low_complexity 1 180 0 4 1326 299 155 0 4 chr6 97224466 97224531 -52292506 - B4 SINE B4 -69 96 31 4 1326 875 199 192 6 chr6 97224612 97224794 -52292243 + B3 SINE B2 1 216 0 4 1326 635 226 0 6 chr6 97224828 97224988 -52292049 + CT-rich Low_complexity Low_complexity 2 160 0 4 1326 665 283 87 14 chr6 97224989 97225197 -52291840 - B4 SINE B4 -69 223 1 4 1326 325 167 0 25 chr6 97225337 97225417 -52291620 + CT-rich Low_complexity Low_complexity 2 79 0 4 1326 315 0 0 0 chr6 97225417 97225452 -52291585 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1326 279 256 30 105 chr6 97226272 97226538 -52290499 - RMER17C LTR ERVK -162 248 3 4 1326 961 215 30 10 chr6 97226822 97227024 -52290013 + ID_B1 SINE B4 7 212 -12 4 1326 274 171 0 28 chr6 97227032 97227104 -52289933 + C-rich Low_complexity Low_complexity 3 72 0 4 1326 271 145 53 0 chr6 97227103 97227179 -52289858 + (TCTCTG)n Simple_repeat Simple_repeat 2 81 0 4 1326 239 249 66 122 chr6 97227471 97227668 -52289369 - MER96B DNA hAT -176 241 56 4 1326 848 242 105 40 chr6 97228336 97228736 -52288301 + RMER10A LTR ERVL 1 426 -16 4 1326 22 35 0 0 chr6 97228832 97228861 -52288176 + AT_rich Low_complexity Low_complexity 1 29 0 4 1326 299 307 20 153 chr6 97229414 97229668 -52287369 + B4 SINE B4 1 220 -72 4 1326 255 93 0 0 chr6 97229742 97229785 -52287252 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 4 1326 374 0 0 21 chr6 97230287 97230334 -52286703 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1326 1989 175 32 71 chr6 97231102 97231629 -52285408 - RLTR31A_Mm LTR ERVK -2 588 1 4 1326 387 0 0 0 chr6 97232247 97232290 -52284747 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1326 383 154 26 0 chr6 97232937 97233015 -52284022 + CT-rich Low_complexity Low_complexity 4 83 0 5 1326 998 88 35 6 chr6 97233021 97233192 -52283845 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 5 1326 721 219 19 2 chr6 97233399 97233576 -52283461 + B3A SINE B2 1 182 -34 5 1326 22 0 0 0 chr6 97233586 97233608 -52283429 + AT_rich Low_complexity Low_complexity 1 22 0 5 1326 783 236 16 42 chr6 97234020 97234210 -52282827 - ID_B1 SINE B4 -23 201 17 5 1326 579 162 23 189 chr6 97234372 97234547 -52282490 + B1_Mur4 SINE Alu 4 149 -1 5 1326 262 232 263 0 chr6 97234687 97234786 -52282251 - PB1 SINE Alu 0 127 3 5 1326 825 284 52 22 chr6 97235047 97235314 -52281723 + ORR1E LTR MaLR 85 359 0 5 1326 231 167 57 38 chr6 97235424 97235530 -52281507 + (TATAA)n Simple_repeat Simple_repeat 1 108 0 5 1326 330 145 58 19 chr6 97235530 97235685 -52281352 + (TA)n Simple_repeat Simple_repeat 2 162 0 5 1326 766 204 85 121 chr6 97235754 97235810 -52281227 + B3 SINE B2 2 45 -171 5 1326 1160 55 7 7 chr6 97235810 97235957 -52281080 - B1_Mus2 SINE Alu 0 147 1 5 1326 766 204 85 121 chr6 97235957 97236123 -52280914 + B3 SINE B2 46 216 0 5 1326 241 256 25 25 chr6 97236506 97236586 -52280451 + ID4_ SINE ID 2 81 -2 5 1326 502 281 91 102 chr6 97238558 97239018 -52278019 + LTR37B LTR ERV1 1 455 -13 5 1326 22 0 0 0 chr6 97239840 97239862 -52277175 + AT_rich Low_complexity Low_complexity 1 22 0 5 1326 393 237 229 34 chr6 97240059 97240177 -52276860 - B1F SINE Alu 0 149 9 5 1326 21 36 0 0 chr6 97240270 97240298 -52276739 + AT_rich Low_complexity Low_complexity 1 28 0 5 1326 891 155 21 0 chr6 97240427 97240569 -52276468 + B1_Mus2 SINE Alu 1 145 -2 5 1326 230 273 106 16 chr6 97240705 97240828 -52276209 + L1ME4a LINE L1 5960 6093 -31 5 1326 261 0 0 0 chr6 97241865 97241894 -52275143 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1326 372 372 16 22 chr6 97242078 97242262 -52274775 - MER58A DNA MER1_type -39 185 3 5 1326 204 271 86 0 chr6 97242721 97242791 -52274246 + MIR SINE MIR 75 150 -58 5 1326 221 302 31 92 chr6 97243577 97243713 -52273324 + MIRb SINE MIR 35 169 -99 5 1326 1075 240 44 14 chr6 97246452 97246727 -52270310 + B4A SINE B4 2 284 -8 5 1326 206 317 111 32 chr6 97247076 97247265 -52269772 + MIRc SINE MIR 2 205 -63 5 1326 757 270 37 28 chr6 97247285 97247502 -52269535 + ID_B1 SINE B4 2 220 -4 5 1326 1226 92 60 0 chr6 97247523 97247707 -52269330 + B2_Mm2 SINE B2 1 195 0 5 1326 28 61 0 0 chr6 97248471 97248520 -52268517 + AT_rich Low_complexity Low_complexity 1 49 0 5 1326 25 51 0 0 chr6 97249021 97249060 -52267977 + AT_rich Low_complexity Low_complexity 1 39 0 5 1326 869 130 0 82 chr6 97249787 97249946 -52267091 + B1_Mus1 SINE Alu 1 146 -2 5 1326 432 37 0 0 chr6 97249992 97250046 -52266991 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 5 1326 575 242 8 0 chr6 97250660 97250792 -52266245 + B1_Mur1 SINE Alu 2 134 -15 5 1326 644 305 106 10 chr6 97251737 97251936 -52265101 - ID_B1 SINE B4 -5 219 2 5 1326 411 21 0 0 chr6 97251973 97252021 -52265016 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1326 448 204 8 77 chr6 97252022 97252139 -52264898 + B3A SINE B2 15 123 -75 5 1326 315 258 118 59 chr6 97252139 97252158 -52264879 + B4 SINE B4 15 158 -134 5 1326 333 0 0 0 chr6 97252171 97252208 -52264829 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1326 693 276 105 20 chr6 97252860 97253060 -52263977 - ID_B1 SINE B4 -6 218 2 5 1326 466 327 31 26 chr6 97253317 97253546 -52263491 + MIRb SINE MIR 36 265 -3 5 1327 303 333 80 25 chr6 97256054 97256217 -52260820 - MIRb SINE MIR -44 224 53 5 1327 294 143 0 0 chr6 97257087 97257136 -52259901 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 5 1327 252 0 0 0 chr6 97257176 97257204 -52259833 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1327 1179 55 0 0 chr6 97257825 97257836 -52259201 - B1_Mus2 SINE Alu -1 146 136 5 1327 195 42 0 0 chr6 97257836 97257860 -52259177 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1327 1179 55 0 0 chr6 97257860 97257994 -52259043 - B1_Mus2 SINE Alu -12 135 2 5 1327 348 24 0 0 chr6 97258426 97258467 -52258570 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1327 297 0 0 0 chr6 97259342 97259375 -52257662 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1327 1106 50 35 0 chr6 97259661 97259802 -52257235 - B1_Mm SINE Alu 0 147 2 5 1327 1841 19 0 0 chr6 97259958 97260169 -52256868 + L1Md_F2 LINE L1 6359 6569 -13 5 1327 349 214 43 0 chr6 97260200 97260270 -52256767 + Lx8 LINE L1 7268 7340 -133 5 1327 33 0 0 0 chr6 97260362 97260395 -52256642 + AT_rich Low_complexity Low_complexity 1 33 0 5 1327 444 296 35 17 chr6 97260414 97260616 -52256421 + L1M4 LINE L1 5486 5692 -488 5 1327 189 0 0 0 chr6 97262869 97262890 -52254147 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1327 21 36 0 0 chr6 97262965 97262993 -52254044 + AT_rich Low_complexity Low_complexity 1 28 0 5 1327 825 189 99 25 chr6 97264569 97264770 -52252267 + B3 SINE B2 1 216 0 5 1327 402 245 18 7 chr6 97264827 97264939 -52252098 - B1_Mus2 SINE Alu -7 113 1 5 1327 912 50 0 178 chr6 97264957 97265126 -52251911 - B1_Mur3 SINE Alu -10 139 1 5 1327 280 293 76 17 chr6 97265271 97265389 -52251648 + MIRb SINE MIR 110 234 -34 5 1327 249 33 0 0 chr6 97266477 97266507 -52250530 + (TTC)n Simple_repeat Simple_repeat 2 31 0 5 1327 306 106 0 0 chr6 97266551 97266598 -52250439 + (GGA)n Simple_repeat Simple_repeat 3 49 0 5 1327 254 277 79 63 chr6 97266670 97266695 -52250342 - B4A SINE B4 -70 222 134 5 1327 422 301 0 0 chr6 97266695 97266788 -52250249 - PB1D7 SINE Alu -10 110 18 5 1327 216 192 0 19 chr6 97267651 97267704 -52249333 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 5 1327 607 326 27 27 chr6 97267730 97267913 -52249124 - ID_B1 SINE B4 -22 202 20 5 1327 194 230 0 29 chr6 97268200 97268274 -52248763 + L2c LINE L2 3103 3172 -203 5 1327 252 328 16 57 chr6 97268399 97268522 -52248515 + MLT1J LTR MaLR 22 139 -373 5 1327 226 295 127 6 chr6 97268716 97268873 -52248164 - MIRc SINE MIR -62 206 31 5 1327 606 122 37 0 chr6 97269606 97269713 -52247324 + B2_Mm2 SINE B2 1 111 -84 5 1327 450 0 0 0 chr6 97269713 97269763 -52247274 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 5 1327 702 268 108 5 chr6 97269805 97270000 -52247037 + ID_B1 SINE B4 1 215 -9 5 1327 302 234 0 13 chr6 97270378 97270456 -52246581 + ID4 SINE ID 5 81 -2 5 1327 339 179 10 87 chr6 97270494 97270598 -52246439 - ID_B1 SINE B4 0 224 129 5 1327 756 21 0 0 chr6 97270505 97270599 -52246438 - B1_Mus2 SINE Alu -7 140 47 5 1327 464 86 14 0 chr6 97271652 97271722 -52245315 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1327 469 261 8 25 chr6 97272935 97273053 -52243984 - ID_B1 SINE B4 -4 220 105 5 1327 281 193 70 0 chr6 97273371 97273428 -52243609 + ID_B1 SINE B4 84 144 -80 5 1327 265 246 16 0 chr6 97274853 97274914 -52242123 + ID4_ SINE ID 17 78 -5 5 1327 222 267 0 0 chr6 97274921 97274966 -52242071 + polypurine Low_complexity Low_complexity 4 48 0 5 1327 965 198 65 10 chr6 97275095 97275294 -52241743 + B3 SINE B2 1 210 -6 5 1327 645 38 0 0 chr6 97275751 97275831 -52241206 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 1327 340 203 0 51 chr6 97275831 97275909 -52241128 - B1_Mur3 SINE Alu -13 136 63 5 1327 721 210 5 59 chr6 97275946 97276133 -52240904 - B2_Mm2 SINE B2 -18 177 1 5 1327 1246 48 0 0 chr6 97276418 97276565 -52240472 - B1_Mus2 SINE Alu 0 147 1 5 1327 234 292 89 11 chr6 97277244 97277334 -52239703 + B1F1 SINE Alu 5 101 -48 5 1327 231 298 132 19 chr6 97277334 97277350 -52239687 + ID_B1 SINE B4 86 203 -21 5 1327 488 100 12 0 chr6 97277350 97277430 -52239607 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 5 1327 2458 133 20 7 chr6 97277446 97277855 -52239182 + MTC LTR MaLR 6 419 -2 5 1327 210 171 0 0 chr6 97277856 97277897 -52239140 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 5 1327 871 252 30 0 chr6 97278677 97278875 -52238162 + ID_B1 SINE B4 8 211 -13 5 1327 342 80 0 0 chr6 97279093 97279143 -52237894 + (CACCC)n Simple_repeat Simple_repeat 4 53 0 5 1327 1487 250 42 3 chr6 97280836 97281197 -52235840 + MTEa LTR MaLR 3 377 -2 5 1327 1238 219 44 39 chr6 97281222 97281560 -52235477 - ORR1D2 LTR MaLR -30 340 1 5 1327 863 183 193 6 chr6 97281826 97282007 -52235030 + B3 SINE B2 1 215 -1 5 1327 633 38 0 0 chr6 97282017 97282097 -52234940 + B2_Mm2 SINE B2 3 82 -113 5 1327 323 258 0 61 chr6 97282097 97282116 -52234921 + RSINE1 SINE B4 4 96 -69 5 1327 485 220 0 27 chr6 97282643 97282755 -52234282 - PB1D10 SINE Alu 0 117 9 5 1327 647 245 17 86 chr6 97283050 97283224 -52233813 + B3 SINE B2 4 165 -51 5 1327 204 97 0 0 chr6 97283224 97283255 -52233782 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1327 986 139 90 0 chr6 97283811 97283977 -52233060 + B2_Mm2 SINE B2 1 181 -14 5 1327 673 260 22 17 chr6 97284102 97284282 -52232755 + B3A SINE B2 2 182 -16 5 1327 825 310 73 13 chr6 97284345 97284659 -52232378 + MER2 DNA MER2_type 13 345 0 6 1327 303 314 50 14 chr6 97284809 97284948 -52232089 + L1MC2 LINE L1 6186 6329 -15 6 1327 294 132 0 0 chr6 97284994 97285047 -52231990 + (TCCC)n Simple_repeat Simple_repeat 2 54 0 6 1327 684 212 21 0 chr6 97285043 97285267 -52231770 + CT-rich Low_complexity Low_complexity 1 228 0 6 1327 469 193 12 0 chr6 97285282 97285365 -52231672 - B1_Mus2 SINE Alu -63 84 1 6 1327 363 301 139 41 chr6 97285367 97285561 -52231476 + MER20 DNA MER1_type 7 219 0 6 1327 444 229 115 0 chr6 97285660 97285782 -52231255 + ID_B1 SINE B4 86 221 -3 6 1327 341 198 0 12 chr6 97285840 97285922 -52231115 + GA-rich Low_complexity Low_complexity 3 83 0 6 1327 509 229 34 60 chr6 97285940 97286089 -52230948 + B1F SINE Alu 4 148 -1 6 1327 354 214 79 0 chr6 97286275 97286364 -52230673 + PB1D7 SINE Alu 24 119 -1 6 1327 321 327 26 97 chr6 97286474 97286578 -52230459 - MER47B DNA MER2_type -40 378 273 6 1327 1045 258 57 18 chr6 97286578 97286858 -52230179 + B4 SINE B4 2 292 0 6 1327 321 327 26 97 chr6 97286858 97286980 -52230057 - MER47B DNA MER2_type -146 272 168 6 1327 396 0 0 0 chr6 97287538 97287582 -52229455 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1327 192 77 0 0 chr6 97287903 97287929 -52229108 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1327 362 141 0 27 chr6 97288287 97288360 -52228677 + (CATA)n Simple_repeat Simple_repeat 4 74 0 6 1327 736 258 35 20 chr6 97288384 97288582 -52228455 + ID_B1 SINE B4 23 223 -1 6 1327 363 204 80 0 chr6 97288625 97288713 -52228324 + L1ME3B LINE L1 5773 5867 -373 6 1327 499 246 18 0 chr6 97288732 97288846 -52228191 + PB1D10 SINE Alu 2 117 0 6 1327 294 50 0 0 chr6 97288861 97288901 -52228136 + (CCAA)n Simple_repeat Simple_repeat 3 42 0 6 1327 575 254 80 0 chr6 97289812 97289950 -52227087 + RSINE1 SINE B4 4 152 -13 6 1327 270 0 0 0 chr6 97289956 97289986 -52227051 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1327 391 250 9 37 chr6 97290521 97290629 -52226408 + ID_B1 SINE B4 2 106 -118 6 1327 721 252 0 83 chr6 97290874 97291090 -52225947 + B3A SINE B2 1 198 0 6 1327 185 0 40 0 chr6 97291162 97291187 -52225850 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1327 573 261 121 0 chr6 97292017 97292216 -52224821 - ID_B1 SINE B4 0 224 2 6 1327 630 271 84 0 chr6 97292534 97292700 -52224337 + ID_B1 SINE B4 8 187 -37 6 1327 332 180 16 0 chr6 97293054 97293115 -52223922 - MIRb SINE MIR -103 165 104 6 1327 414 16 31 16 chr6 97293329 97293393 -52223644 + (TTTG)n Simple_repeat Simple_repeat 2 66 0 6 1327 1187 29 0 0 chr6 97293393 97293531 -52223506 - B1_Mm SINE Alu -9 138 1 6 1327 585 262 0 8 chr6 97293739 97293866 -52223171 - ID_B1 SINE B4 -17 207 82 6 1327 713 258 12 6 chr6 97294139 97294307 -52222730 - ID_B1 SINE B4 -52 172 4 6 1327 878 143 0 39 chr6 97294406 97294559 -52222478 - B1_Mur4 SINE Alu 0 150 4 6 1327 711 241 22 49 chr6 97295536 97295572 -52221465 + ID SINE ID 6 41 -183 6 1327 1645 112 243 3 chr6 97295572 97295868 -52221169 - ORR1B2 LTR MaLR 0 367 1 6 1327 711 241 22 49 chr6 97295868 97296054 -52220983 + ID_B1 SINE B4 42 222 -2 6 1327 683 193 83 113 chr6 97296061 97296265 -52220772 + B3 SINE B2 16 213 -3 6 1327 203 301 108 0 chr6 97296303 97296386 -52220651 + MIRc SINE MIR 53 144 -124 6 1327 746 156 20 60 chr6 97296401 97296551 -52220486 - B1F2 SINE Alu -1 148 5 6 1327 550 228 7 22 chr6 97296766 97296905 -52220132 - RSINE1 SINE B4 -9 156 20 6 1327 269 273 20 20 chr6 97296997 97297098 -52219939 - MER53 DNA hAT -92 101 1 6 1327 192 40 0 0 chr6 97297531 97297556 -52219481 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 6 1327 28 0 0 0 chr6 97297601 97297629 -52219408 + AT_rich Low_complexity Low_complexity 1 28 0 6 1327 366 280 0 27 chr6 97298601 97298711 -52218326 - ID_B1 SINE B4 0 224 118 6 1327 841 252 19 0 chr6 97298939 97299145 -52217892 - B3 SINE B2 -4 212 3 6 1327 31 26 0 0 chr6 97300415 97300453 -52216584 + AT_rich Low_complexity Low_complexity 1 38 0 6 1327 195 100 0 0 chr6 97300462 97300492 -52216545 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1327 264 275 37 12 chr6 97300512 97300593 -52216444 + L1M5 LINE L1 5688 5770 -354 6 1327 538 258 0 0 chr6 97300628 97300748 -52216289 + ID_B1 SINE B4 100 219 -5 6 1327 189 246 169 0 chr6 97301820 97301885 -52215152 - MIRb SINE MIR -75 193 118 6 1327 261 197 0 0 chr6 97302189 97302255 -52214782 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1327 28 61 0 0 chr6 97303394 97303443 -52213594 + AT_rich Low_complexity Low_complexity 1 49 0 6 1327 347 0 23 0 chr6 97304240 97304283 -52212754 + (TC)n Simple_repeat Simple_repeat 2 45 0 6 1327 288 0 0 0 chr6 97305882 97305914 -52211123 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 6 1327 1661 42 0 0 chr6 97307542 97307735 -52209302 + B2_Mm1t SINE B2 1 193 0 6 1327 290 176 0 63 chr6 97307748 97307827 -52209210 + RLTR11A LTR ERVK 389 462 -66 6 1327 1711 60 115 0 chr6 97307840 97308074 -52208963 - L1Md_A LINE L1 -1 6581 6321 6 1327 385 219 14 0 chr6 97308135 97308208 -52208829 + ID4 SINE ID 3 76 -7 6 1327 320 257 14 0 chr6 97308318 97308392 -52208645 - ID4 SINE ID -4 79 5 6 1327 360 0 0 0 chr6 97308600 97308640 -52208397 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1327 513 292 7 7 chr6 97308710 97308848 -52208189 - MER63A DNA AcHobo -69 141 4 6 1327 651 178 0 11 chr6 97308865 97308985 -52208052 + B1_Mur2 SINE Alu 8 124 -24 6 1327 222 37 0 0 chr6 97308986 97309013 -52208024 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1327 232 345 66 44 chr6 97309180 97309498 -52207539 + L1MC4 LINE L1 7716 8040 -2 6 1327 1436 248 66 60 chr6 97310256 97310740 -52206297 + RCHARR1 DNA MER1_type 11 497 -477 6 1327 580 168 27 103 chr6 97310760 97310810 -52206227 + Lx8 LINE L1 7013 7060 -413 6 1327 2129 176 13 31 chr6 97310810 97311196 -52205841 + RLTR30 LTR ERV1 1 379 0 6 1327 580 168 27 103 chr6 97311196 97311291 -52205746 + Lx8 LINE L1 7061 7146 -327 6 1327 258 74 0 53 chr6 97311300 97311357 -52205680 + (CAAAAA)n Simple_repeat Simple_repeat 6 59 0 6 1327 1617 178 37 48 chr6 97311370 97311391 -52205646 + ORR1D1 LTR MaLR 1 21 -353 6 1327 324 0 0 0 chr6 97311391 97311427 -52205610 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1327 432 0 0 0 chr6 97311427 97311474 -52205563 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1327 1617 178 37 48 chr6 97311474 97311829 -52205208 + ORR1D1 LTR MaLR 22 373 -1 6 1327 367 281 45 97 chr6 97311978 97312132 -52204905 + ID_B1 SINE B4 79 224 0 6 1327 848 127 29 0 chr6 97312166 97312339 -52204698 + GA-rich Low_complexity Low_complexity 1 178 0 6 1327 360 315 76 8 chr6 97312358 97312489 -52204548 + RSINE1 SINE B4 22 161 -4 6 1327 1203 203 170 52 chr6 97312516 97312958 -52204079 + RCHARR1 DNA MER1_type 481 974 0 6 1327 557 268 45 19 chr6 97312995 97313151 -52203886 - MER20 DNA MER1_type -59 160 1 6 1327 236 325 50 0 chr6 97313340 97313420 -52203617 + L4 LINE RTE 1625 1708 -321 6 1327 282 275 35 13 chr6 97313726 97313833 -52203204 - B1F1 SINE Alu -3 114 3 6 1327 838 144 22 0 chr6 97314035 97314174 -52202863 - B1_Mus2 SINE Alu -5 142 1 6 1327 613 239 49 0 chr6 97314235 97314377 -52202660 - ID_B1 SINE B4 -1 223 75 6 1327 292 358 73 0 chr6 97315032 97315183 -52201854 + L1ME3A LINE L1 5636 5797 -376 6 1327 403 161 452 0 chr6 97315196 97315289 -52201748 - PB1D9 SINE Alu -14 136 2 6 1327 421 322 23 17 chr6 97315473 97315650 -52201387 + L1ME3A LINE L1 5986 6163 -10 6 1327 506 198 15 37 chr6 97316418 97316693 -52200344 + GA-rich Low_complexity Low_complexity 1 268 0 6 1327 243 204 0 0 chr6 97316719 97316773 -52200264 + GA-rich Low_complexity Low_complexity 4 57 0 6 1327 289 286 0 21 chr6 97316985 97317078 -52199959 + L1MC4a LINE L1 6802 6892 -990 6 1327 330 264 0 19 chr6 97317094 97317202 -52199835 + PB1D10 SINE Alu 11 116 -1 6 1327 248 0 31 0 chr6 97317359 97317391 -52199646 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1327 403 287 52 103 chr6 97317418 97317496 -52199541 - B4 SINE B4 0 292 229 6 1327 1654 36 0 0 chr6 97317496 97317688 -52199349 - B2_Mm1a SINE B2 0 193 2 6 1327 403 287 52 103 chr6 97317688 97317803 -52199234 - B4 SINE B4 -64 228 109 6 1327 389 279 91 101 chr6 97317995 97318023 -52199014 - B3A SINE B2 0 198 172 6 1327 180 77 0 0 chr6 97318023 97318049 -52198988 + (TATG)n Simple_repeat Simple_repeat 4 29 0 6 1327 389 279 91 101 chr6 97318049 97318219 -52198818 - B3A SINE B2 -27 171 2 6 1327 236 214 0 28 chr6 97319020 97319051 -52197986 + (CCCA)n Simple_repeat Simple_repeat 2 32 0 6 1327 1188 124 0 0 chr6 97319051 97319407 -52197630 + (TCCA)n Simple_repeat Simple_repeat 1 356 0 6 1327 236 214 0 28 chr6 97319407 97319446 -52197591 + (CCCA)n Simple_repeat Simple_repeat 1 38 0 6 1327 243 310 32 65 chr6 97319453 97319546 -52197491 + MTE2b LTR MaLR 127 216 -163 6 1327 392 310 22 22 chr6 97319616 97319794 -52197243 + L1ME3A LINE L1 5986 6163 -10 6 1327 584 209 0 0 chr6 97320101 97320206 -52196831 - B1_Mur3 SINE Alu -44 105 1 6 1327 450 326 0 14 chr6 97321251 97321397 -52195640 - ID_B1 SINE B4 -1 223 80 6 1327 438 20 0 0 chr6 97321429 97321480 -52195557 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1327 291 28 0 0 chr6 97321480 97321515 -52195522 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1327 399 325 17 0 chr6 97321652 97321772 -52195265 - B4A SINE B4 -169 123 2 6 1327 351 258 75 0 chr6 97321909 97322002 -52195035 - PB1D10 SINE Alu -12 105 6 6 1327 578 266 14 0 chr6 97322085 97322228 -52194809 - B1_Mur1 SINE Alu 0 149 5 6 1327 3128 14 5 14 chr6 97322250 97322620 -52194417 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1327 56014 25 17 4 chr6 97322622 97329073 -52187964 + IAPEz-int LTR ERVK 3 6481 0 6 1327 3128 14 5 14 chr6 97329073 97329443 -52187594 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1327 246 182 32 113 chr6 97330196 97330258 -52186779 + ID4 SINE ID 1 57 -26 7 1327 373 234 33 1 chr6 97330696 97330791 -52186246 + B4A SINE B4 1 96 -69 7 1327 716 154 5 18 chr6 97330791 97331010 -52186027 + GA-rich Low_complexity Low_complexity 1 215 0 7 1327 508 243 0 0 chr6 97331014 97331121 -52185916 + PB1D10 SINE Alu 3 109 -8 7 1327 620 226 7 20 chr6 97331162 97331311 -52185726 - B1_Mus2 SINE Alu 0 147 1 7 1327 244 271 133 67 chr6 97332140 97332290 -52184747 - RSINE1 SINE B4 0 165 6 7 1327 21 0 0 0 chr6 97332460 97332481 -52184556 + AT_rich Low_complexity Low_complexity 1 21 0 7 1327 592 327 64 82 chr6 97332943 97333176 -52183861 + B4 SINE B4 1 229 -63 7 1327 309 253 125 12 chr6 97333653 97333733 -52183304 + B4 SINE B4 204 292 0 7 1327 1023 157 0 15 chr6 97333752 97334298 -52182739 + (TAGA)n Simple_repeat Simple_repeat 1 537 0 7 1327 189 214 0 0 chr6 97334292 97334334 -52182703 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 7 1327 253 242 27 157 chr6 97334336 97334483 -52182554 - MTEb LTR MaLR -54 325 198 7 1327 459 291 51 22 chr6 97335396 97335533 -52181504 + RSINE1 SINE B4 3 143 -22 7 1327 642 68 0 0 chr6 97335542 97335630 -52181407 + (CA)n Simple_repeat Simple_repeat 2 89 0 7 1327 358 318 18 0 chr6 97335668 97335778 -52181259 + MIR SINE MIR 77 188 -74 7 1327 243 319 19 90 chr6 97336175 97336330 -52180707 - B1F SINE Alu -1 148 5 7 1327 1054 101 88 12 chr6 97336349 97336519 -52180518 - B2_Mm2 SINE B2 -10 185 3 7 1327 230 359 90 70 chr6 97336835 97336991 -52180046 + B4A SINE B4 1 159 -133 7 1327 735 118 118 0 chr6 97336982 97337109 -52179928 - B2_Mm2 SINE B2 -16 179 38 7 1327 456 212 167 9 chr6 97337290 97337404 -52179633 - B1_Mur2 SINE Alu -17 132 1 7 1327 744 170 62 22 chr6 97338048 97338242 -52178795 + B3 SINE B2 4 198 0 7 1327 608 205 27 0 chr6 97338252 97338364 -52178673 + PB1D10 SINE Alu 2 116 -1 7 1327 506 326 23 14 chr6 97338381 97338599 -52178438 - ID_B1 SINE B4 -3 221 2 7 1327 787 175 79 14 chr6 97338752 97338891 -52178146 + B1_Mur1 SINE Alu 2 149 0 7 1327 207 0 0 0 chr6 97338909 97338932 -52178105 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1327 316 294 34 74 chr6 97338962 97339138 -52177899 - Lx8 LINE L1 -2 7471 7303 7 1327 853 220 184 16 chr6 97339182 97339427 -52177610 - Lx8 LINE L1 -373 7100 6815 7 1327 560 313 22 0 chr6 97339583 97339717 -52177320 - ID_B1 SINE B4 -4 220 84 7 1327 439 294 0 0 chr6 97340742 97340844 -52176193 + B1F SINE Alu 1 102 -47 7 1327 219 103 0 0 chr6 97340850 97340889 -52176148 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 7 1327 1224 54 0 0 chr6 97340913 97341060 -52175977 - B1_Mus1 SINE Alu 0 148 2 7 1327 797 305 173 14 chr6 97341660 97342254 -52174783 + L1MEc LINE L1 124 812 -5588 7 1327 536 101 13 0 chr6 97342254 97342333 -52174704 + B3 SINE B2 1 80 -136 7 1327 252 238 0 0 chr6 97342646 97342709 -52174328 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1327 3779 248 54 17 chr6 97342914 97343834 -52173203 + RCHARR1 DNA MER1_type 3 956 -18 7 1327 543 246 14 61 chr6 97343829 97343976 -52173061 + B4 SINE B4 150 289 -3 7 1327 404 296 108 39 chr6 97344053 97344502 -52172535 + L1MEc LINE L1 1328 1860 -4555 7 1327 265 303 73 0 chr6 97344685 97344794 -52172243 + L1MEc LINE L1 2086 2202 -4198 7 1327 284 70 0 23 chr6 97345064 97345108 -52171929 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1327 263 300 73 118 chr6 97345225 97345361 -52171676 + RSINE1 SINE B4 32 161 -4 7 1327 226 231 43 32 chr6 97345975 97346069 -52170968 + (GGGTG)n Simple_repeat Simple_repeat 3 97 0 7 1327 198 0 0 0 chr6 97346505 97346527 -52170510 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1327 1345 167 18 0 chr6 97347742 97347964 -52169073 - URR1A DNA MER1_type 0 226 1 7 1327 441 220 11 0 chr6 97348123 97348214 -52168823 + RMER17B LTR ERVK 183 274 -684 7 1327 564 15 0 0 chr6 97349969 97350034 -52167003 + (TC)n Simple_repeat Simple_repeat 1 65 0 7 1327 210 309 22 96 chr6 97350333 97350469 -52166568 - L2c LINE L2 -245 3142 3017 7 1327 812 247 195 3 chr6 97351186 97351428 -52165609 + B4 SINE B4 1 282 -10 7 1327 432 55 0 0 chr6 97351435 97351490 -52165547 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1327 378 0 0 0 chr6 97352213 97352255 -52164782 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 1327 336 148 0 0 chr6 97352257 97352318 -52164719 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 7 1327 194 0 39 0 chr6 97352501 97352527 -52164510 + (TC)n Simple_repeat Simple_repeat 1 27 0 7 1327 281 26 0 26 chr6 97353343 97353382 -52163655 + (TGGGGG)n Simple_repeat Simple_repeat 4 41 0 7 1327 552 258 0 24 chr6 97353582 97353709 -52163328 - RSINE1 SINE B4 -22 143 20 7 1327 387 0 0 0 chr6 97353784 97353827 -52163210 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1327 612 240 31 88 chr6 97354467 97354695 -52162342 - B3 SINE B2 0 216 2 7 1327 21 36 0 0 chr6 97354840 97354868 -52162169 + AT_rich Low_complexity Low_complexity 1 28 0 7 1327 229 278 155 82 chr6 97354868 97354952 -52162085 - B4A SINE B4 -1 291 113 7 1327 473 222 0 92 chr6 97354952 97355071 -52161966 - PB1D10 SINE Alu 0 117 10 7 1327 229 278 155 82 chr6 97355071 97355083 -52161954 - B4A SINE B4 -1 112 83 7 1327 318 50 0 0 chr6 97355767 97355807 -52161230 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1327 302 297 88 0 chr6 97355816 97355907 -52161130 - RSINE1 SINE B4 -43 122 24 7 1327 261 83 0 0 chr6 97356550 97356586 -52160451 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 7 1327 284 298 124 39 chr6 97356852 97356981 -52160056 + L2b LINE L2 3229 3368 -7 7 1327 292 236 21 74 chr6 97357663 97357773 -52159264 - B1_Mur4 SINE Alu -21 99 1 7 1327 825 145 22 151 chr6 97357773 97357921 -52159116 - MT2B LTR ERVL -345 256 132 7 1327 4614 115 61 14 chr6 97357803 97358587 -52158450 - ORR1A4-int LTR MaLR -1142 821 1 7 1327 2109 132 0 58 chr6 97358591 97358936 -52158101 - ORR1A4 LTR MaLR -4 325 1 7 1327 344 284 19 19 chr6 97359250 97359354 -52157683 - B4 SINE B4 -82 210 107 7 1327 324 70 0 0 chr6 97359372 97359415 -52157622 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 7 1327 1137 42 42 0 chr6 97360464 97360777 -52156260 + (CCCTAG)n Simple_repeat Simple_repeat 1 325 0 7 1327 238 227 0 26 chr6 97361041 97361118 -52155919 + GA-rich Low_complexity Low_complexity 3 77 0 7 1327 584 270 61 30 chr6 97361259 97361348 -52155689 - B4 SINE B4 -1 291 227 7 1327 573 42 0 0 chr6 97361348 97361420 -52155617 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1327 584 276 46 72 chr6 97361420 97361542 -52155495 - B4 SINE B4 -66 226 102 7 1327 300 325 132 56 chr6 97362609 97362860 -52154177 + L1MC LINE L1 5475 5744 -2138 7 1327 610 200 50 43 chr6 97363005 97363146 -52153891 + B1_Mur1 SINE Alu 3 144 -5 7 1327 775 213 83 21 chr6 97363895 97364087 -52152950 + B3 SINE B2 1 204 -12 7 1327 1426 66 33 0 chr6 97364161 97364343 -52152694 + B2_Mm2 SINE B2 1 188 -7 7 1327 265 323 0 0 chr6 97365377 97365439 -52151598 + C-rich Low_complexity Low_complexity 2 63 0 7 1327 3741 70 77 13 chr6 97365748 97366269 -52150768 + L1_Mus4 LINE L1 6068 6621 -15 7 1327 433 285 51 51 chr6 97366534 97366671 -52150366 - B1F1 SINE Alu -3 146 10 7 1327 185 0 40 0 chr6 97366863 97366888 -52150149 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1327 573 312 78 92 chr6 97367902 97368184 -52148853 - B4A SINE B4 -14 278 1 7 1327 253 385 0 0 chr6 97368197 97368293 -52148744 - ID_B1 SINE B4 -45 179 84 7 1327 1984 226 37 26 chr6 97368763 97369253 -52147784 + RLTR11A2 LTR ERVK 19 513 -14 7 1327 335 294 59 0 chr6 97369526 97369628 -52147409 + PB1D10 SINE Alu 1 108 -9 7 1327 506 181 9 0 chr6 97370908 97371013 -52146024 + (TA)n Simple_repeat Simple_repeat 2 107 0 7 1327 549 255 42 7 chr6 97371221 97371363 -52145674 - B1F2 SINE Alu -1 148 2 7 1327 254 367 78 26 chr6 97372245 97372294 -52144743 - RSINE1 SINE B4 -2 163 2 7 1327 472 257 57 0 chr6 97372294 97372399 -52144638 - B3 SINE B2 -105 111 1 7 1327 2000 240 145 19 chr6 97372549 97373136 -52143901 - Lx6 LINE L1 -25 7435 6775 7 1327 192 77 0 0 chr6 97373735 97373761 -52143276 + (CTTTG)n Simple_repeat Simple_repeat 3 28 0 7 1327 234 261 77 33 chr6 97373765 97373856 -52143181 - RMER30 DNA MER1_type -100 102 8 7 1327 284 336 45 9 chr6 97374388 97374499 -52142538 - PB1D10 SINE Alu 0 117 3 7 1327 320 284 0 0 chr6 97374535 97374602 -52142435 - ID4 SINE ID -16 67 1 7 1327 4601 142 122 16 chr6 97374766 97375632 -52141405 + RMER17B LTR ERVK 1 958 0 7 1327 647 242 0 22 chr6 97375945 97376080 -52140957 + ID_B1 SINE B4 86 217 -7 7 1327 405 246 119 8 chr6 97376112 97376221 -52140816 + PB1 SINE Alu 1 120 -7 7 1327 234 346 56 44 chr6 97376222 97376382 -52140655 - MIRb SINE MIR -1 267 106 7 1327 214 26 51 26 chr6 97376434 97376473 -52140564 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1327 533 255 62 52 chr6 97376847 97377058 -52139979 + ID_B1 SINE B4 2 214 -10 7 1327 462 189 183 69 chr6 97377247 97377378 -52139659 + B1F SINE Alu 4 149 0 7 1327 1235 61 0 0 chr6 97377487 97377634 -52139403 - B1_Mm SINE Alu 0 147 1 7 1327 342 0 0 0 chr6 97377754 97377792 -52139245 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1327 740 147 60 30 chr6 97377900 97378033 -52139004 + B1_Mur2 SINE Alu 13 149 0 7 1327 338 172 143 51 chr6 97378141 97378239 -52138798 - ID_B1 SINE B4 0 224 118 7 1327 402 331 13 65 chr6 97378703 97378858 -52138179 - B4 SINE B4 -143 149 3 7 1327 445 282 42 34 chr6 97379897 97380092 -52136945 - MTD LTR MaLR -210 209 15 8 1327 23 54 0 0 chr6 97380917 97380954 -52136083 + AT_rich Low_complexity Low_complexity 1 37 0 8 1327 646 222 161 23 chr6 97382105 97382306 -52134731 + MTEa LTR MaLR 1 251 -168 8 1327 681 50 0 0 chr6 97382306 97382386 -52134651 + L1Md_F2 LINE L1 5507 5586 -297 8 1327 7964 46 22 2 chr6 97382386 97383350 -52133687 + L1Md_F2 LINE L1 5587 6569 -13 8 1327 627 292 48 53 chr6 97383364 97383570 -52133467 + MTE2b LTR MaLR 171 375 -4 8 1327 339 314 77 51 chr6 97383628 97383923 -52133114 + L2b LINE L2 2978 3296 -91 8 1327 602 286 72 81 chr6 97384044 97384280 -52132757 + B4 SINE B4 40 273 -19 8 1327 1288 119 67 62 chr6 97384365 97384589 -52132448 - URR1B DNA MER1_type 0 225 1 8 1327 247 297 0 15 chr6 97384802 97384867 -52132170 - AmnSINE1 SINE SINE -336 239 176 8 1327 364 228 117 19 chr6 97385329 97385432 -52131605 + PB1D10 SINE Alu 5 117 0 8 1327 392 0 0 20 chr6 97385773 97385822 -52131215 + (CAGT)n Simple_repeat Simple_repeat 4 51 0 8 1327 252 305 230 6 chr6 97385860 97386038 -52130999 - MER20 DNA MER1_type -1 218 1 8 1327 464 261 61 0 chr6 97386110 97386225 -52130812 + RSINE1 SINE B4 16 137 -28 8 1327 312 70 0 0 chr6 97386241 97386284 -52130753 + (CCTA)n Simple_repeat Simple_repeat 1 43 0 8 1327 333 0 0 0 chr6 97386285 97386322 -52130715 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 8 1327 183 80 0 0 chr6 97386329 97386354 -52130683 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1328 488 77 13 0 chr6 97387049 97387127 -52129910 + (CA)n Simple_repeat Simple_repeat 1 79 0 8 1328 385 305 71 115 chr6 97387136 97387362 -52129675 - ID_B1 SINE B4 -6 218 3 8 1328 228 359 0 0 chr6 97387731 97387809 -52129228 + ID2 SINE ID 2 79 -4 8 1328 756 239 35 103 chr6 97388319 97388535 -52128502 - B4 SINE B4 -2 290 82 8 1328 651 197 62 55 chr6 97388535 97388680 -52128357 - B1_Mur3 SINE Alu -2 147 2 8 1328 756 239 35 103 chr6 97388680 97388694 -52128343 - B4 SINE B4 -211 81 75 8 1328 486 0 0 0 chr6 97388694 97388748 -52128289 + (TA)n Simple_repeat Simple_repeat 1 54 0 8 1328 756 239 35 103 chr6 97388748 97388777 -52128260 - B4 SINE B4 -218 74 48 8 1328 211 336 103 45 chr6 97388802 97388958 -52128079 - MIRc SINE MIR -53 215 51 8 1328 253 278 0 0 chr6 97390026 97390098 -52126939 - ID2 SINE ID -10 73 2 8 1328 285 98 0 0 chr6 97390944 97390985 -52126052 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 8 1328 730 267 67 10 chr6 97391093 97391301 -52125736 + ID_B1 SINE B4 5 224 0 8 1328 990 178 126 5 chr6 97392055 97392253 -52124784 + URR1A DNA MER1_type 5 226 0 8 1328 445 224 182 53 chr6 97392294 97392426 -52124611 + B1_Mur2 SINE Alu 1 149 0 8 1328 707 252 0 0 chr6 97392697 97392840 -52124197 - B1_Mur1 SINE Alu -6 143 1 8 1328 341 211 112 112 chr6 97392850 97392957 -52124080 - PB1D10 SINE Alu -8 109 3 8 1328 198 0 0 0 chr6 97393511 97393533 -52123504 + (TG)n Simple_repeat Simple_repeat 2 23 0 8 1328 315 294 65 47 chr6 97393618 97393725 -52123312 + PB1D10 SINE Alu 6 114 -35 8 1328 324 0 0 0 chr6 97393960 97393996 -52123041 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1328 467 325 93 0 chr6 97394028 97394179 -52122858 - RSINE1 SINE B4 0 165 1 8 1328 196 340 62 27 chr6 97394917 97395029 -52122008 + MIR SINE MIR 35 150 -58 8 1328 191 278 0 36 chr6 97395265 97395321 -52121716 + MIRb SINE MIR 43 96 -172 8 1328 402 318 77 20 chr6 97395506 97395702 -52121335 - L2a LINE L2 -217 3209 3003 8 1328 582 114 0 0 chr6 97395720 97395808 -52121229 + (TCCC)n Simple_repeat Simple_repeat 3 90 0 8 1328 1230 118 5 16 chr6 97395838 97396027 -52121010 + B2_Mm2 SINE B2 2 188 -7 8 1328 254 282 0 0 chr6 97396375 97396446 -52120591 + ID_B1 SINE B4 150 220 -4 8 1328 276 333 64 53 chr6 97396551 97396738 -52120299 - L2a LINE L2 -517 2902 2714 8 1328 235 221 117 0 chr6 97396770 97396847 -52120190 + L1MB7 LINE L1 6099 6184 0 8 1328 560 153 80 20 chr6 97397665 97397765 -52119272 + URR1A DNA MER1_type 1 106 -120 8 1328 243 0 0 0 chr6 97397765 97397792 -52119245 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1328 1072 60 0 0 chr6 97397792 97397925 -52119112 - B1_Mus2 SINE Alu -8 139 7 8 1328 625 170 27 0 chr6 97397930 97398042 -52118995 + URR1A DNA MER1_type 92 206 -20 8 1328 734 303 28 9 chr6 97398987 97399200 -52117837 + B4A SINE B4 9 225 -67 8 1328 663 301 89 19 chr6 97399200 97399471 -52117566 + B4A SINE B4 1 290 -2 8 1328 225 94 0 0 chr6 97399540 97399572 -52117465 + (GA)n Simple_repeat Simple_repeat 2 33 0 8 1328 288 158 0 0 chr6 97399573 97399649 -52117388 + (CA)n Simple_repeat Simple_repeat 1 76 0 8 1328 2226 59 0 0 chr6 97400358 97400628 -52116409 - L1_Mus1 LINE L1 0 6567 6298 8 1328 3445 67 0 0 chr6 97400630 97401051 -52115986 + L1_Mus1 LINE L1 5867 6287 -280 8 1328 387 41 0 0 chr6 97402066 97402115 -52114922 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1328 720 108 0 0 chr6 97402167 97402297 -52114740 + (CA)n Simple_repeat Simple_repeat 2 131 0 8 1328 1210 172 19 19 chr6 97402384 97402592 -52114445 - URR1B DNA MER1_type -15 210 3 8 1328 366 299 46 112 chr6 97402592 97402625 -52114412 + CYRA11_Mm Unknown Y-chromosome 186 410 -207 8 1328 231 287 9 73 chr6 97402865 97402974 -52114063 + PB1D9 SINE Alu 1 102 -18 8 1328 1013 176 62 0 chr6 97403046 97403222 -52113815 + B3 SINE B2 1 187 -29 8 1328 258 32 0 0 chr6 97403242 97403273 -52113764 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1328 25 0 0 0 chr6 97403273 97403298 -52113739 + AT_rich Low_complexity Low_complexity 1 25 0 8 1328 235 222 39 65 chr6 97403876 97403953 -52113084 + MLT1A0 LTR MaLR 138 212 -196 8 1328 566 55 55 9 chr6 97404031 97404075 -52112962 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1328 929 98 17 22 chr6 97404075 97404253 -52112784 + (GAGAA)n Simple_repeat Simple_repeat 1 177 0 8 1328 566 55 55 9 chr6 97404253 97404317 -52112720 + (GA)n Simple_repeat Simple_repeat 1 70 0 8 1328 299 288 8 83 chr6 97404691 97404812 -52112225 + MLT1A0 LTR MaLR 248 359 -6 8 1328 396 0 0 0 chr6 97405559 97405603 -52111434 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1328 907 238 59 5 chr6 97406049 97406252 -52110785 - B3 SINE B2 0 216 3 8 1328 329 291 16 71 chr6 97406277 97406403 -52110634 - PB1 SINE Alu -2 125 7 8 1328 200 256 0 0 chr6 97406654 97406693 -52110344 + polypurine Low_complexity Low_complexity 1 39 0 8 1328 885 109 0 8 chr6 97406962 97407091 -52109946 + B1_Mur4 SINE Alu 23 150 0 8 1328 549 302 1 12 chr6 97407098 97407308 -52109729 + Lx8 LINE L1 7020 7239 -234 8 1328 1068 102 0 20 chr6 97407621 97407771 -52109266 + B1_Mus1 SINE Alu 2 148 0 8 1328 180 0 0 0 chr6 97407796 97407816 -52109221 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 8 1328 211 320 66 33 chr6 97410086 97410238 -52106799 + MIR SINE MIR 79 235 -27 8 1328 570 190 18 6 chr6 97410431 97410552 -52106485 - B3 SINE B2 -73 120 3 8 1328 486 339 169 13 chr6 97410554 97410945 -52106092 + Kanga2_a DNA Tc2 180 631 -257 8 1328 482 306 109 81 chr6 97411660 97411980 -52105057 - MLT1A LTR MaLR 0 374 46 8 1328 792 241 75 5 chr6 97412254 97412454 -52104583 - B3 SINE B2 -1 215 2 8 1328 459 0 0 0 chr6 97412763 97412814 -52104223 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1328 240 338 0 51 chr6 97413070 97413148 -52103889 + MER45B DNA Tip100 1 74 -966 8 1328 852 162 29 0 chr6 97413181 97413317 -52103720 - B1_Mur4 SINE Alu -9 141 2 8 1328 210 71 0 0 chr6 97413324 97413352 -52103685 + (TTC)n Simple_repeat Simple_repeat 1 28 0 8 1328 310 284 126 10 chr6 97413460 97413563 -52103474 - PB1D10 SINE Alu -2 115 1 8 1328 294 164 0 0 chr6 97414501 97414556 -52102481 + CT-rich Low_complexity Low_complexity 2 56 0 8 1328 1056 137 138 30 chr6 97414746 97414949 -52102088 + URR1A DNA MER1_type 1 225 -1 8 1328 460 279 4 17 chr6 97415155 97415270 -52101767 - PB1D10 SINE Alu -1 116 4 8 1328 202 200 0 0 chr6 97415279 97415319 -52101718 + CT-rich Low_complexity Low_complexity 4 43 0 8 1328 625 227 7 72 chr6 97415319 97415471 -52101566 - B1_Mur2 SINE Alu 0 149 8 8 1328 304 383 41 52 chr6 97416115 97416382 -52100655 - L1M5 LINE L1 -436 5743 5480 8 1328 536 229 31 39 chr6 97416433 97416560 -52100477 - B1F SINE Alu -6 143 18 8 1328 221 313 78 39 chr6 97416472 97416575 -52100462 - B4A SINE B4 -98 194 88 8 1328 975 18 0 0 chr6 97416594 97416707 -52100330 + (TCTCC)n Simple_repeat Simple_repeat 1 113 0 8 1328 1103 93 6 0 chr6 97416708 97416870 -52100167 + (TCCC)n Simple_repeat Simple_repeat 3 165 0 8 1328 243 61 0 0 chr6 97416895 97416928 -52100109 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1328 441 314 0 8 chr6 97416929 97417048 -52099989 - RSINE1 SINE B4 -40 125 8 8 1328 243 0 0 0 chr6 97417278 97417305 -52099732 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1328 761 211 15 0 chr6 97417305 97417438 -52099599 - B1_Mus2 SINE Alu -9 138 4 8 1328 822 209 260 12 chr6 97417909 97418179 -52098858 + MTE2b LTR MaLR 50 379 0 8 1328 418 220 71 35 chr6 97419402 97419515 -52097522 - PB1D9 SINE Alu -3 117 1 8 1328 215 300 25 0 chr6 97419639 97419719 -52097318 + (CATA)n Simple_repeat Simple_repeat 2 83 0 8 1328 997 275 57 107 chr6 97419793 97420176 -52096861 - MTE2a LTR MaLR 0 379 16 8 1328 310 275 24 24 chr6 97420521 97420603 -52096434 - ID4 SINE ID 0 83 2 8 1328 434 314 43 7 chr6 97420604 97420745 -52096292 - B1F SINE Alu -3 146 1 8 1328 550 278 34 23 chr6 97421535 97421607 -52095430 + MTEa LTR MaLR 1 75 -304 8 1328 342 0 0 0 chr6 97421607 97421645 -52095392 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1328 550 278 34 23 chr6 97421645 97421749 -52095288 + MTEa LTR MaLR 76 179 -200 8 1328 236 258 0 0 chr6 97422382 97422448 -52094589 + GA-rich Low_complexity Low_complexity 1 66 0 9 1328 356 232 132 18 chr6 97424033 97424147 -52092890 + L2a LINE L2 3299 3425 -1 9 1328 906 252 6 127 chr6 97424165 97424497 -52092540 - B4 SINE B4 0 292 1 9 1328 328 276 29 39 chr6 97424555 97424657 -52092380 - RSINE1 SINE B4 -60 105 5 9 1328 23 33 0 0 chr6 97424724 97424754 -52092283 + AT_rich Low_complexity Low_complexity 1 30 0 9 1328 250 240 49 16 chr6 97425199 97425322 -52091715 + (TCCA)n Simple_repeat Simple_repeat 4 130 0 9 1328 740 265 51 121 chr6 97425492 97425684 -52091353 - B4 SINE B4 0 292 93 9 1328 1275 89 0 0 chr6 97425684 97425863 -52091174 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 9 1328 1164 35 0 0 chr6 97425863 97426004 -52091033 + (TTCCC)n Simple_repeat Simple_repeat 4 144 0 9 1328 740 265 51 121 chr6 97426004 97426123 -52090914 - B4 SINE B4 -200 92 3 9 1328 3020 133 93 22 chr6 97426488 97427034 -52090003 - RMER4B LTR ERVK 0 585 1 9 1328 304 306 24 0 chr6 97427307 97427406 -52089631 - PB1D7 SINE Alu -5 115 15 9 1328 278 219 31 15 chr6 97427416 97427481 -52089556 - ID4_ SINE ID -13 70 5 9 1328 307 242 30 0 chr6 97427699 97427765 -52089272 - PB1D10 SINE Alu -49 68 1 9 1328 252 120 0 0 chr6 97428582 97428632 -52088405 + (TAG)n Simple_repeat Simple_repeat 1 50 0 9 1328 360 0 0 0 chr6 97428790 97428830 -52088207 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1328 228 269 113 41 chr6 97428830 97428890 -52088147 - RMER17A2 LTR ERVK -544 362 185 9 1328 827 151 24 0 chr6 97428890 97429016 -52088021 - B3 SINE B2 -86 130 2 9 1328 499 339 157 17 chr6 97429172 97429517 -52087520 + LTR16A LTR ERVL 55 447 -4 9 1328 535 250 19 0 chr6 97429785 97429893 -52087144 - B3 SINE B2 -50 166 57 9 1328 279 0 0 0 chr6 97430124 97430155 -52086882 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1328 242 282 139 47 chr6 97430169 97430383 -52086654 + L2c LINE L2 3055 3281 -94 9 1328 555 288 95 36 chr6 97430605 97430879 -52086158 - B4A SINE B4 -1 291 2 9 1328 183 42 0 0 chr6 97430956 97430980 -52086057 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 9 1328 269 286 101 96 chr6 97431021 97431199 -52085838 - MER58A DNA MER1_type -8 216 38 9 1328 643 163 15 15 chr6 97431606 97431743 -52085294 + CT-rich Low_complexity Low_complexity 1 137 0 9 1328 1188 68 0 0 chr6 97431743 97431890 -52085147 - B1_Mus1 SINE Alu -1 147 1 9 1328 294 288 59 53 chr6 97431948 97432117 -52084920 - MIRb SINE MIR -6 262 93 9 1328 375 60 0 0 chr6 97433323 97433373 -52083664 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1328 652 267 156 13 chr6 97433379 97433603 -52083434 - B4A SINE B4 -35 257 2 9 1328 311 253 114 76 chr6 97433724 97433882 -52083155 + ORR1E LTR MaLR 88 251 -108 9 1328 632 255 7 13 chr6 97434139 97434294 -52082743 - RSINE1 SINE B4 0 165 12 9 1328 242 269 132 44 chr6 97434293 97434338 -52082699 - MER106A DNA MER1_type -88 148 97 9 1328 203 88 0 29 chr6 97434338 97434373 -52082664 + (TTA)n Simple_repeat Simple_repeat 2 35 0 9 1328 322 239 15 0 chr6 97434379 97434446 -52082591 - ID2 SINE ID -13 70 3 9 1328 242 269 132 44 chr6 97434446 97434529 -52082508 - MER106A DNA MER1_type -146 90 2 9 1328 301 337 94 41 chr6 97434954 97435124 -52081913 - MIRb SINE MIR -1 267 89 9 1328 198 0 0 0 chr6 97435345 97435367 -52081670 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 9 1328 221 83 28 0 chr6 97435438 97435474 -52081563 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 9 1328 707 273 7 13 chr6 97435695 97435847 -52081190 + B4 SINE B4 97 247 -45 9 1328 351 0 0 0 chr6 97436434 97436473 -52080564 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1328 396 0 0 0 chr6 97438138 97438182 -52078855 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1328 261 0 0 0 chr6 97438182 97438210 -52078827 + (GA)n Simple_repeat Simple_repeat 2 30 0 9 1328 189 74 0 0 chr6 97439182 97439209 -52077828 + (GGA)n Simple_repeat Simple_repeat 2 28 0 9 1328 195 42 0 0 chr6 97439850 97439874 -52077163 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1328 812 281 20 77 chr6 97440143 97440434 -52076603 - ID_B1 SINE B4 -18 274 1 9 1328 830 269 26 0 chr6 97440434 97440658 -52076379 - B4A SINE B4 -62 230 1 9 1328 797 268 15 0 chr6 97441170 97441375 -52075662 - B3 SINE B2 -4 212 5 9 1328 631 311 67 10 chr6 97441377 97441585 -52075452 + B4 SINE B4 67 286 -6 9 1328 457 268 79 7 chr6 97442396 97442535 -52074502 + B1F SINE Alu 1 149 0 9 1328 459 329 35 23 chr6 97442674 97442845 -52074192 + MER20 DNA MER1_type 1 173 -46 9 1328 304 228 121 71 chr6 97443151 97443203 -52073834 - B1F SINE Alu 0 149 92 9 1328 1115 176 228 29 chr6 97443203 97443514 -52073523 + ORR1D1 LTR MaLR 2 374 0 9 1328 304 228 121 71 chr6 97443514 97443560 -52073477 - B1F SINE Alu -58 91 46 9 1328 670 282 71 134 chr6 97443733 97444016 -52073021 + MTEa LTR MaLR 3 267 -112 9 1328 207 269 49 49 chr6 97444202 97444284 -52072753 + L2c LINE L2 3306 3387 0 9 1328 214 301 139 66 chr6 97444492 97444794 -52072243 - L2c LINE L2 -142 3233 2910 9 1328 254 289 51 15 chr6 97444904 97445041 -52071996 + B1F SINE Alu 1 142 -7 9 1328 259 315 0 0 chr6 97445073 97445127 -52071910 + ID4_ SINE ID 22 75 -8 9 1328 531 112 0 0 chr6 97445136 97445216 -52071821 + (CA)n Simple_repeat Simple_repeat 2 81 0 9 1328 675 199 11 17 chr6 97445698 97445877 -52071160 + GA-rich Low_complexity Low_complexity 3 180 0 9 1328 350 231 7 20 chr6 97445891 97446042 -52070995 + GA-rich Low_complexity Low_complexity 1 148 0 9 1328 270 352 40 16 chr6 97446445 97446569 -52070468 - MIRc SINE MIR -52 216 90 9 1328 235 320 96 24 chr6 97446699 97446824 -52070213 - MLT1A0 LTR MaLR -1 373 240 9 1328 892 104 30 0 chr6 97446832 97446967 -52070070 - RLTR11A LTR ERVK 0 528 390 9 1328 1398 139 106 8 chr6 97446967 97447221 -52069816 + RLTR11A LTR ERVK 250 528 0 9 1328 492 280 47 82 chr6 97447223 97447456 -52069581 - MLT1A0 LTR MaLR -140 225 1 9 1328 730 269 41 28 chr6 97448473 97448691 -52068346 + ID_B1 SINE B4 4 224 0 9 1328 661 291 85 82 chr6 97448755 97448874 -52068163 + L1MB5 LINE L1 5378 5495 -679 9 1328 2261 155 54 17 chr6 97448874 97449280 -52067757 + MTC LTR MaLR 1 421 0 9 1328 661 291 85 82 chr6 97449280 97449549 -52067488 + L1MB5 LINE L1 5496 5771 -403 9 1328 378 213 0 13 chr6 97449549 97449625 -52067412 + ID4 SINE ID 3 77 -6 9 1328 661 291 85 82 chr6 97449625 97449684 -52067353 + L1MB5 LINE L1 5772 5827 -347 9 1328 636 254 100 37 chr6 97449682 97449923 -52067114 + L1MB7 LINE L1 5640 5895 -289 9 1328 1327 115 16 0 chr6 97451073 97451264 -52065773 + B2_Mm2 SINE B2 1 194 -1 9 1328 1202 36 0 0 chr6 97451717 97451855 -52065182 + B1_Mus2 SINE Alu 1 138 -9 9 1328 207 0 0 0 chr6 97451855 97451878 -52065159 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1328 882 211 33 23 chr6 97452098 97452312 -52064725 + B3 SINE B2 1 216 0 9 1328 253 284 60 24 chr6 97452491 97452574 -52064463 - LTR90A LTR LTR -877 99 14 9 1328 200 91 68 0 chr6 97452677 97452721 -52064316 + A-rich Low_complexity Low_complexity 3 49 0 9 1328 515 222 132 53 chr6 97452746 97452936 -52064101 + B4 SINE B4 21 225 -67 9 1328 180 176 0 0 chr6 97452944 97452978 -52064059 + GA-rich Low_complexity Low_complexity 2 35 0 9 1328 286 306 14 0 chr6 97453002 97453074 -52063963 + B4 SINE B4 216 288 -4 9 1328 353 138 277 51 chr6 97453252 97453389 -52063648 + RMER4A LTR ERVK 4 171 -295 9 1328 459 0 0 0 chr6 97453812 97453863 -52063174 + (TTTC)n Simple_repeat Simple_repeat 4 54 0 9 1328 25 31 0 0 chr6 97453870 97453902 -52063135 + AT_rich Low_complexity Low_complexity 1 32 0 9 1328 216 143 0 0 chr6 97454257 97454299 -52062738 + (CAT)n Simple_repeat Simple_repeat 3 44 0 9 1328 930 132 63 0 chr6 97454366 97454525 -52062512 - URR1A DNA MER1_type 0 226 58 9 1328 227 268 28 14 chr6 97454785 97454857 -52062180 - MLT1N2 LTR MaLR 0 562 490 9 1328 462 36 0 0 chr6 97454959 97455015 -52062022 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1328 303 153 20 10 chr6 97455017 97455116 -52061921 + T-rich Low_complexity Low_complexity 1 100 0 9 1328 1110 132 6 0 chr6 97456791 97456958 -52060079 - URR1A DNA MER1_type -2 224 57 9 1328 419 322 61 14 chr6 97457114 97457262 -52059775 - MamRep137 DNA TcMar? -112 332 178 9 1328 316 296 83 0 chr6 97457694 97457802 -52059235 - Cheshire DNA MER1_type -2143 277 161 9 1328 247 319 113 17 chr6 97459450 97459565 -52057472 + MLT1K LTR MaLR 447 572 -23 9 1328 351 269 13 0 chr6 97460189 97460267 -52056770 - ID4_ SINE ID 0 83 5 9 1328 216 0 0 0 chr6 97460334 97460358 -52056679 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 9 1328 315 105 0 0 chr6 97460692 97460749 -52056288 + (T)n Simple_repeat Simple_repeat 1 57 0 9 1328 233 351 27 0 chr6 97461441 97461552 -52055485 - MIRb SINE MIR -16 252 139 9 1328 732 156 0 0 chr6 97461593 97461721 -52055316 + GA-rich Low_complexity Low_complexity 2 129 0 9 1328 304 296 111 44 chr6 97462558 97462754 -52054283 - MIR SINE MIR -8 260 33 9 1328 227 31 0 30 chr6 97463338 97463371 -52053666 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 9 1328 561 201 71 85 chr6 97464114 97464326 -52052711 + RLTR23 LTR ERV1 222 430 0 9 1328 1159 88 0 0 chr6 97464427 97464575 -52052462 + B1_Mus1 SINE Alu 1 148 0 9 1328 234 0 0 0 chr6 97464576 97464602 -52052435 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 9 1328 587 346 27 27 chr6 97464820 97465043 -52051994 + B4A SINE B4 2 224 -68 9 1328 258 343 48 97 chr6 97465181 97465552 -52051485 + L2c LINE L2 3034 3386 -1 9 1328 251 345 18 18 chr6 97465611 97465723 -52051314 + PB1D10 SINE Alu 1 112 -5 9 1328 586 336 44 56 chr6 97466386 97466635 -52050402 - MLT1D LTR MaLR -259 246 1 1 1328 896 335 74 3 chr6 97466980 97467291 -52049746 + MLT1E LTR MaLR 318 650 -3 1 1328 447 19 0 0 chr6 97468412 97468464 -52048573 + (TGGGGG)n Simple_repeat Simple_repeat 3 54 0 1 1328 931 229 57 0 chr6 97468891 97469101 -52047936 + ID_B1 SINE B4 3 224 0 1 1328 716 152 8 0 chr6 97469183 97469315 -52047722 + (TA)n Simple_repeat Simple_repeat 1 133 0 1 1328 250 341 106 0 chr6 97469509 97469641 -52047396 - MER3 DNA MER1_type -16 193 48 1 1328 602 321 71 13 chr6 97470228 97470452 -52046585 - MER82 DNA MER2_type 0 653 417 1 1328 473 271 65 64 chr6 97470755 97470911 -52046126 + MLT1A0 LTR MaLR 223 347 -18 1 1328 426 296 73 88 chr6 97471927 97472131 -52044906 - MIR SINE MIR -21 241 41 1 1328 477 0 0 0 chr6 97472245 97472298 -52044739 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 1 1328 313 308 159 6 chr6 97472316 97472473 -52044564 - L1ME1 LINE L1 -17 6162 5982 1 1328 400 340 85 19 chr6 97472540 97472798 -52044239 + Charlie4a DNA MER1_type 48 322 -186 1 1328 273 162 0 0 chr6 97472928 97472996 -52044041 + T-rich Low_complexity Low_complexity 1 68 0 1 1328 428 0 19 0 chr6 97475208 97475260 -52041777 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1328 243 0 0 0 chr6 97475620 97475647 -52041390 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1328 317 302 83 16 chr6 97475780 97475901 -52041136 + MER117 DNA MER1_type 42 170 -27 1 1328 353 243 19 145 chr6 97477243 97477402 -52039635 + Lx8 LINE L1 6883 7021 -452 1 1328 1172 248 42 70 chr6 97477405 97477558 -52039479 + Lx8 LINE L1 7126 7267 -206 1 1328 858 186 170 0 chr6 97477558 97477746 -52039291 + URR1B DNA MER1_type 3 222 -3 1 1328 1172 248 42 70 chr6 97477746 97477948 -52039089 + Lx8 LINE L1 7268 7471 -2 1 1328 291 54 0 0 chr6 97478026 97478063 -52038974 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 1 1328 429 109 0 0 chr6 97478076 97478140 -52038897 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 1 1328 850 224 19 38 chr6 97478141 97478350 -52038687 + B3 SINE B2 1 205 -11 1 1328 211 229 0 0 chr6 97478455 97478503 -52038534 + T-rich Low_complexity Low_complexity 1 48 0 1 1328 625 253 13 20 chr6 97480332 97480481 -52036556 + B1F SINE Alu 1 148 -1 1 1328 187 306 23 23 chr6 97480638 97480725 -52036312 - MIR3 SINE MIR -40 168 82 1 1328 232 320 49 40 chr6 97480972 97481172 -52035865 - MIR SINE MIR -3 259 60 1 1328 414 39 0 0 chr6 97481183 97481235 -52035802 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1328 426 323 125 64 chr6 97481389 97481700 -52035337 + ORR1E LTR MaLR 30 359 0 1 1328 715 284 50 54 chr6 97481894 97482173 -52034864 - MLT1B LTR MaLR -1 389 112 1 1328 1517 229 103 13 chr6 97482162 97482539 -52034498 + MTD LTR MaLR 7 417 -2 1 1328 893 208 0 26 chr6 97482539 97482690 -52034347 - B3 SINE B2 -68 148 2 1 1328 202 160 20 20 chr6 97482715 97482766 -52034271 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1328 296 315 54 23 chr6 97482936 97483066 -52033971 + MamRep137 DNA TcMar? 86 219 -225 1 1328 207 0 0 0 chr6 97483380 97483403 -52033634 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1328 649 331 117 21 chr6 97483425 97484094 -52032943 + L1MB4 LINE L1 5402 6134 -49 1 1328 231 281 0 17 chr6 97484208 97484266 -52032771 + L3 LINE CR1 2124 2180 -2309 1 1328 668 322 98 19 chr6 97484885 97485202 -52031835 - ORR1E LTR MaLR 0 359 18 1 1328 596 250 102 19 chr6 97485244 97485461 -52031576 + MTD LTR MaLR 31 328 -91 1 1328 1470 186 88 37 chr6 97485461 97485813 -52031224 + ORR1D1 LTR MaLR 1 370 -4 1 1328 596 221 183 27 chr6 97485813 97485882 -52031155 + MTD LTR MaLR 329 418 -1 1 1328 348 292 113 94 chr6 97486564 97486829 -52030208 - L1M5 LINE L1 -1015 5131 4862 1 1328 351 0 0 0 chr6 97486833 97486872 -52030165 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1328 242 383 88 36 chr6 97486956 97487262 -52029775 + L2b LINE L2 2914 3235 -152 1 1328 298 151 19 0 chr6 97487510 97487563 -52029474 - B4A SINE B4 -237 55 2 1 1328 241 302 58 0 chr6 97487604 97487682 -52029355 + L2b LINE L2 3279 3412 -14 1 1328 313 117 0 32 chr6 97488107 97488169 -52028868 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 1 1328 496 262 178 6 chr6 97488199 97488368 -52028669 - B3A SINE B2 0 198 1 1 1328 298 349 112 9 chr6 97488741 97488955 -52028082 + MER21B LTR ERV1 411 646 -217 1 1328 240 35 0 0 chr6 97489245 97489274 -52027763 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 1328 1006 272 34 50 chr6 97489408 97489707 -52027330 - MTEa LTR MaLR -79 280 9 1 1328 272 282 103 37 chr6 97490163 97490299 -52026738 - B1_Mur4 SINE Alu 0 150 6 1 1328 811 261 39 0 chr6 97490198 97490378 -52026659 - ID_B1 SINE B4 -37 187 1 1 1328 226 245 0 20 chr6 97490334 97490384 -52026653 - ZP3AR Satellite Satellite -127 85 37 1 1328 3014 141 63 144 chr6 97490832 97491486 -52025551 - MT2B LTR ERVL 0 601 1 1 1328 1175 267 11 7 chr6 97491885 97492168 -52024869 - B4A SINE B4 -8 284 1 1 1328 286 288 25 0 chr6 97493161 97493241 -52023796 - ID4 SINE ID 0 83 2 1 1328 401 270 61 85 chr6 97493279 97493290 -52023747 + CYRA11_Mm Unknown Y-chromosome 182 239 -378 1 1328 1201 166 5 5 chr6 97493290 97493496 -52023541 - URR1B DNA MER1_type -19 206 1 1 1328 401 270 61 85 chr6 97493496 97493526 -52023511 + CYRA11_Mm Unknown Y-chromosome 240 422 -195 1 1328 725 196 21 48 chr6 97493618 97493763 -52023274 + RSINE1 SINE B4 3 143 -22 1 1328 227 206 144 52 chr6 97493943 97494040 -52022997 - L1ME2 LINE L1 -1 6178 6073 1 1328 508 316 77 66 chr6 97494119 97494482 -52022555 + RLTR26 LTR ERVK 95 461 -181 1 1328 319 228 46 39 chr6 97494836 97494945 -52022092 - L1ME2 LINE L1 -197 5967 5858 1 1328 501 237 0 17 chr6 97494949 97495065 -52021972 - PB1D7 SINE Alu -1 119 6 1 1328 326 312 109 0 chr6 97495225 97495363 -52021674 + MER2 DNA MER2_type 138 290 -55 1 1328 21 36 0 0 chr6 97495958 97495986 -52021051 + AT_rich Low_complexity Low_complexity 1 28 0 1 1328 238 257 42 14 chr6 97496442 97496513 -52020524 + MIR SINE MIR 73 145 -117 1 1328 1740 144 124 35 chr6 97496976 97497315 -52019722 + ORR1D1 LTR MaLR 4 372 -2 1 1328 616 265 62 0 chr6 97497613 97497775 -52019262 + B4A SINE B4 1 172 -120 1 1328 432 0 0 0 chr6 97497898 97497946 -52019091 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1328 186 43 0 0 chr6 97497961 97497984 -52019053 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1328 1134 105 4 8 chr6 97498069 97498318 -52018719 + (TG)n Simple_repeat Simple_repeat 1 248 0 1 1328 249 33 0 0 chr6 97498356 97498386 -52018651 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1 1328 1030 291 58 63 chr6 97498807 97499155 -52017882 - ORR1E LTR MaLR -10 349 4 1 1328 204 368 65 14 chr6 97499844 97499982 -52017055 - L2b LINE L2 -1 3374 3230 1 1328 443 298 56 24 chr6 97500057 97500271 -52016766 + MIRc SINE MIR 14 241 -27 1 1328 1011 271 50 18 chr6 97500601 97500883 -52016154 + B4 SINE B4 2 292 0 2 1328 518 340 25 0 chr6 97500926 97501126 -52015911 - MER33 DNA MER1_type -119 205 1 3 1328 402 21 0 0 chr6 97501730 97501777 -52015260 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 4 1328 932 68 0 0 chr6 97501780 97501897 -52015140 - B1_Mus1 SINE Alu -12 136 20 5 1328 265 321 0 24 chr6 97502088 97502171 -52014866 + MIRb SINE MIR 176 256 -12 6 1328 372 376 52 57 chr6 97502408 97502656 -52014381 + L1M5 LINE L1 5540 5786 -338 7 1328 186 326 73 10 chr6 97502734 97502830 -52014207 + L2a LINE L2 3310 3411 -15 8 1328 273 242 30 15 chr6 97503053 97503120 -52013917 + MER58C DNA MER1_type 143 210 -5 9 1328 235 277 15 30 chr6 97504141 97504208 -52012829 + MTEb LTR MaLR 294 359 -20 1 1328 827 207 61 20 chr6 97504338 97504535 -52012502 + B3 SINE B2 2 206 -10 1 1328 714 284 50 41 chr6 97505475 97505695 -52011342 + B4 SINE B4 30 251 -41 1 1328 453 297 4 39 chr6 97506423 97506558 -52010479 - PB1 SINE Alu -21 128 1 1 1328 290 355 56 14 chr6 97506562 97506705 -52010332 - MER2 DNA MER2_type -121 224 76 1 1328 185 200 24 24 chr6 97507124 97507165 -52009872 + L2b LINE L2 3329 3369 -6 1 1328 196 222 0 43 chr6 97507622 97507669 -52009368 + MER5B DNA MER1_type 10 54 -124 1 1328 332 305 59 30 chr6 97508166 97508301 -52008736 + B4 SINE B4 6 144 -148 1 1328 526 171 8 17 chr6 97508301 97508420 -52008617 + GA-rich Low_complexity Low_complexity 1 118 0 1 1328 711 293 7 0 chr6 97508420 97508570 -52008467 + B4 SINE B4 124 274 -18 1 1328 360 0 0 0 chr6 97508573 97508613 -52008424 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1328 583 167 7 26 chr6 97508663 97508817 -52008220 + (TATATG)n Simple_repeat Simple_repeat 3 153 0 2 1328 611 288 98 80 chr6 97508964 97509251 -52007786 + B4 SINE B4 1 292 0 2 1328 531 45 0 0 chr6 97509262 97509328 -52007709 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1328 252 100 0 0 chr6 97509328 97509367 -52007670 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1328 376 345 131 40 chr6 97509576 97509851 -52007186 - LTR16C LTR ERVL -4 534 235 2 1328 268 333 11 0 chr6 97510016 97510106 -52006931 - MIRc SINE MIR -138 130 40 2 1328 537 264 0 0 chr6 97511620 97511730 -52005307 - PB1D10 SINE Alu -5 112 3 2 1328 1020 271 11 37 chr6 97512058 97512330 -52004707 + B4 SINE B4 28 292 0 2 1328 344 305 81 73 chr6 97512452 97512834 -52004203 + L1MC5 LINE L1 7145 7529 -432 2 1328 186 313 109 57 chr6 97513319 97513512 -52003525 + MIRm SINE MIR 28 230 -46 2 1328 600 246 45 65 chr6 97514217 97514257 -52002780 - B3A SINE B2 0 198 152 3 1328 374 38 0 19 chr6 97514257 97514310 -52002727 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1328 600 246 45 65 chr6 97514310 97514469 -52002568 - B3A SINE B2 -47 151 4 3 1328 488 253 57 45 chr6 97515270 97515427 -52001610 + RSINE1 SINE B4 3 161 -4 3 1328 239 0 0 31 chr6 97515452 97515484 -52001553 + (TAA)n Simple_repeat Simple_repeat 3 33 0 3 1328 3653 65 12 6 chr6 97515993 97516473 -52000564 - L1_Mus3 LINE L1 -3 6635 6153 3 1329 607 266 7 0 chr6 97518115 97518258 -51998779 + B1_Mur1 SINE Alu 5 148 -1 3 1329 339 273 0 0 chr6 97518565 97518642 -51998395 + ID4 SINE ID 3 79 -4 3 1329 324 0 0 0 chr6 97518857 97518893 -51998144 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1329 450 0 0 0 chr6 97519120 97519170 -51997867 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1329 387 0 0 0 chr6 97519170 97519212 -51997825 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1329 276 303 0 50 chr6 97519216 97519296 -51997741 - PB1D10 SINE Alu -41 76 1 4 1329 233 322 108 32 chr6 97519387 97519573 -51997464 + MER113 DNA MER1_type 44 243 -278 4 1329 274 258 15 75 chr6 97519942 97520009 -51997028 - ID4 SINE ID -4 79 17 4 1329 398 263 8 34 chr6 97520033 97520151 -51996886 - PB1D10 SINE Alu -2 115 1 4 1329 25 0 0 0 chr6 97520583 97520608 -51996429 + AT_rich Low_complexity Low_complexity 1 25 0 4 1329 704 294 0 12 chr6 97521421 97521586 -51995451 + RSINE1 SINE B4 3 165 0 4 1329 242 296 90 27 chr6 97521930 97522041 -51994996 + PB1D7 SINE Alu 3 120 0 4 1329 1241 103 0 0 chr6 97522067 97522232 -51994805 - U1 snRNA snRNA 0 165 1 4 1329 503 260 140 0 chr6 97522356 97522491 -51994546 - B3A SINE B2 -54 144 1 4 1329 928 264 56 134 chr6 97522517 97522702 -51994335 - MTE2b LTR MaLR 0 379 198 4 1329 2020 149 109 11 chr6 97522702 97523061 -51993976 + ORR1B1 LTR MaLR 1 394 0 5 1329 928 264 56 134 chr6 97523061 97523286 -51993751 - MTE2b LTR MaLR -182 197 1 4 1329 513 0 0 0 chr6 97523292 97523349 -51993688 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1329 252 330 9 9 chr6 97523513 97523620 -51993417 + L1M4 LINE L1 4838 4944 -1202 5 1329 596 266 42 56 chr6 97523669 97523956 -51993081 + L1M4 LINE L1 4952 5234 -912 5 1329 646 282 68 54 chr6 97523981 97524103 -51992934 + L1M4 LINE L1 5310 5443 -731 5 1329 207 0 0 0 chr6 97524103 97524126 -51992911 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 5 1329 739 189 31 8 chr6 97524126 97524254 -51992783 - B1_Mur1 SINE Alu -17 132 2 5 1329 646 285 105 48 chr6 97524254 97524568 -51992469 + L1M4 LINE L1 5444 5792 -392 5 1329 440 248 35 0 chr6 97525440 97525553 -51991484 - PB1D10 SINE Alu 0 117 1 5 1329 591 253 139 46 chr6 97525745 97526068 -51990969 + ORR1E LTR MaLR 3 355 -4 5 1329 355 260 0 13 chr6 97526708 97526786 -51990251 + ID4 SINE ID 1 77 -6 5 1329 411 73 0 0 chr6 97527302 97527357 -51989680 + (GGA)n Simple_repeat Simple_repeat 2 56 0 5 1329 537 289 182 0 chr6 97527461 97527620 -51989417 + ID_B1 SINE B4 35 222 -2 5 1329 243 0 0 0 chr6 97527643 97527670 -51989367 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 6 1329 489 47 0 0 chr6 97529161 97529225 -51987812 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1329 763 314 93 28 chr6 97529758 97530229 -51986808 + Lx8 LINE L1 6966 7467 -6 6 1329 410 320 157 17 chr6 97530301 97530459 -51986578 + Lx8 LINE L1 7048 7215 -258 6 1329 384 22 0 0 chr6 97530459 97530504 -51986533 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1329 410 320 157 17 chr6 97530504 97530689 -51986348 + Lx8 LINE L1 7216 7438 -35 6 1329 225 260 80 27 chr6 97531269 97531344 -51985693 - ID4_ SINE ID -3 80 2 6 1329 224 264 0 0 chr6 97531550 97531603 -51985434 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1329 516 32 0 0 chr6 97531817 97531879 -51985158 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1329 495 145 0 0 chr6 97531879 97531962 -51985075 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1329 218 263 184 0 chr6 97532298 97532374 -51984663 + MIR SINE MIR 99 188 -74 6 1329 703 274 69 92 chr6 97532387 97532604 -51984433 + B4 SINE B4 2 213 -79 7 1329 472 224 47 23 chr6 97533372 97533500 -51983537 + B1_Mur1 SINE Alu 5 135 -14 7 1329 623 130 0 15 chr6 97533502 97533635 -51983402 + (CAGAGA)n Simple_repeat Simple_repeat 2 132 0 7 1329 756 223 77 10 chr6 97534110 97534305 -51982732 + ID_B1 SINE B4 1 208 -16 7 1329 585 0 0 0 chr6 97534308 97534373 -51982664 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 7 1329 546 316 71 10 chr6 97534453 97534747 -51982290 + L1MB7 LINE L1 5873 6184 0 7 1329 324 169 74 0 chr6 97535087 97535170 -51981867 - MIR SINE MIR -10 258 164 7 1329 387 0 0 0 chr6 97535933 97535976 -51981061 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1329 909 188 0 0 chr6 97537038 97537187 -51979850 + B3A SINE B2 1 149 -49 7 1329 1408 169 0 4 chr6 97538204 97538430 -51978607 - URR1B DNA MER1_type 0 225 1 7 1329 281 234 25 25 chr6 97538509 97538588 -51978449 + CT-rich Low_complexity Low_complexity 6 84 0 8 1329 538 122 19 0 chr6 97538897 97539004 -51978033 + (CA)n Simple_repeat Simple_repeat 1 109 0 8 1329 200 295 20 50 chr6 97539298 97539398 -51977639 + L3 LINE CR1 2031 2127 -2362 8 1329 182 37 0 36 chr6 97540211 97540239 -51976798 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1329 377 209 0 29 chr6 97540239 97540308 -51976729 - RSINE1 SINE B4 -27 138 72 8 1329 1055 226 29 108 chr6 97540311 97540618 -51976419 + MTE2a LTR MaLR 54 336 -43 8 1329 181 204 0 115 chr6 97540697 97540758 -51976279 + MIRm SINE MIR 101 154 -122 8 1329 296 266 69 60 chr6 97540884 97541000 -51976037 - MIRc SINE MIR -27 241 125 8 1329 387 282 65 76 chr6 97541060 97541244 -51975793 + RMER30 DNA MER1_type 5 186 -16 8 1329 440 314 12 42 chr6 97543763 97543929 -51973108 + RSINE1 SINE B4 5 165 0 8 1329 454 314 148 57 chr6 97544387 97544650 -51972387 - B4A SINE B4 -4 288 2 9 1329 294 316 20 73 chr6 97544650 97544800 -51972237 - MLT1J1 LTR MaLR -258 186 45 9 1329 471 295 37 44 chr6 97545657 97545792 -51971245 + RSINE1 SINE B4 4 137 -28 9 1329 516 240 131 8 chr6 97545847 97545969 -51971068 + RSINE1 SINE B4 5 141 -24 9 1329 396 0 0 0 chr6 97545970 97546014 -51971023 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1329 270 333 72 81 chr6 97546043 97546265 -51970772 - MLT1J LTR MaLR -194 318 99 9 1329 211 317 0 130 chr6 97546852 97546921 -51970116 + RSINE1 SINE B4 3 62 -103 9 1329 395 273 192 7 chr6 97547102 97547253 -51969784 - B3A SINE B2 -18 180 2 9 1329 605 261 21 21 chr6 97547986 97548127 -51968910 + ID_B1 SINE B4 84 224 0 9 1329 282 56 0 0 chr6 97548920 97548956 -51968081 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 9 1329 279 354 17 33 chr6 97549061 97549181 -51967856 + MIRb SINE MIR 117 234 -34 1 1329 238 158 26 0 chr6 97549215 97549253 -51967784 - MIRm SINE MIR -123 153 115 1 1329 1813 157 11 74 chr6 97549750 97549889 -51967148 - ORR1A4 LTR MaLR 0 329 193 1 1329 1266 7 0 0 chr6 97549889 97550032 -51967005 + (GGGAGA)n Simple_repeat Simple_repeat 2 144 0 1 1329 1813 157 11 74 chr6 97550032 97550243 -51966794 - ORR1A4 LTR MaLR -137 192 2 1 1329 1692 221 101 13 chr6 97550248 97550333 -51966704 - MTD LTR MaLR 0 419 336 1 1329 1266 170 13 5 chr6 97550333 97550557 -51966480 + URR1A DNA MER1_type 1 226 0 1 1329 1692 221 101 13 chr6 97550557 97550856 -51966181 - MTD LTR MaLR -84 335 1 1 1329 279 293 0 0 chr6 97551051 97551133 -51965904 + B4A SINE B4 3 84 -208 1 1329 663 260 92 18 chr6 97551202 97551429 -51965608 - Tigger1 DNA MER2_type -1535 883 640 1 1329 374 206 153 10 chr6 97551430 97551444 -51965593 - B3 SINE B2 0 216 203 1 1329 321 26 0 0 chr6 97551444 97551482 -51965555 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1 1329 374 206 153 10 chr6 97551482 97551565 -51965472 - B3 SINE B2 -14 202 105 1 1329 392 192 141 0 chr6 97551624 97551723 -51965314 - Tigger1 DNA MER2_type -1768 650 538 1 1329 330 242 173 8 chr6 97552160 97552293 -51964744 - Tigger1 DNA MER2_type -2251 167 13 1 1329 638 208 16 16 chr6 97552833 97552960 -51964077 - ID_B1 SINE B4 -6 218 92 1 1329 23 0 0 0 chr6 97553125 97553148 -51963889 + AT_rich Low_complexity Low_complexity 1 23 0 1 1329 799 140 0 16 chr6 97554152 97554334 -51962703 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1329 672 255 43 17 chr6 97554479 97554682 -51962355 + B4 SINE B4 65 280 -12 1 1329 286 281 66 33 chr6 97554905 97555056 -51961981 - MIR SINE MIR -81 181 26 1 1329 246 32 0 0 chr6 97555208 97555239 -51961798 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1329 251 353 81 77 chr6 97555284 97555323 -51961714 - B4A SINE B4 -28 264 3 1 1329 725 245 54 99 chr6 97555323 97555545 -51961492 - B3A SINE B2 -2 214 3 1 1329 326 225 49 12 chr6 97555545 97555623 -51961414 - B4 SINE B4 -62 230 150 1 1329 180 0 0 0 chr6 97555662 97555682 -51961355 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1329 1894 190 104 26 chr6 97555687 97556071 -51960966 + MTD LTR MaLR 1 414 -5 1 1329 255 246 16 0 chr6 97556071 97556132 -51960905 - B4 SINE B4 -227 65 4 1 1329 238 292 0 27 chr6 97556202 97556276 -51960761 + Cheshire DNA MER1_type 2349 2420 0 1 1329 252 0 0 0 chr6 97556468 97556496 -51960541 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1329 2677 177 20 9 chr6 97556920 97557467 -51959570 - RMER15 LTR ERVL -22 553 1 1 1329 1695 196 58 11 chr6 97557467 97557782 -51959255 + RMER15 LTR ERVL 167 491 -84 1 1329 2958 133 25 27 chr6 97557782 97558307 -51958730 + RLTR28 LTR ERVL 1 524 0 1 1329 1695 196 58 11 chr6 97558307 97558347 -51958690 + RMER15 LTR ERVL 492 532 -43 1 1329 297 0 0 0 chr6 97558347 97558380 -51958657 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1329 1695 196 58 11 chr6 97558380 97558405 -51958632 + RMER15 LTR ERVL 533 565 -10 1 1329 574 308 14 7 chr6 97558404 97558548 -51958489 - ID_B1 SINE B4 -79 145 1 1 1329 297 276 46 28 chr6 97558558 97558666 -51958371 - PB1D9 SINE Alu -10 110 1 1 1329 311 286 0 0 chr6 97559912 97559989 -51957048 - ID4 SINE ID -5 78 2 1 1329 181 324 130 14 chr6 97560759 97560897 -51956140 + MIRb SINE MIR 67 220 -48 1 1329 271 203 0 59 chr6 97561027 97561095 -51955942 - ID4 SINE ID -16 67 4 1 1329 273 303 71 0 chr6 97561163 97561262 -51955775 - MIR SINE MIR -102 160 55 1 1329 244 239 28 14 chr6 97561788 97561860 -51955177 + MLT1A1 LTR MaLR 320 392 -16 1 1329 758 261 130 81 chr6 97562125 97562471 -51954566 - MTE2b LTR MaLR 0 379 17 1 1329 313 297 100 83 chr6 97562546 97562726 -51954311 - MER20 DNA MER1_type -34 185 3 1 1329 393 22 0 0 chr6 97564499 97564545 -51952492 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1329 1210 43 0 0 chr6 97568207 97568348 -51948689 + B1_Mm SINE Alu 1 141 -6 1 1329 429 36 0 0 chr6 97568350 97568405 -51948632 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1329 342 320 56 58 chr6 97569299 97569635 -51947402 + MTEa LTR MaLR 19 377 -2 1 1329 243 0 0 0 chr6 97569669 97569696 -51947341 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1329 205 88 29 0 chr6 97570224 97570258 -51946779 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1329 1128 207 5 0 chr6 97570421 97570624 -51946413 - B3 SINE B2 -12 204 1 1 1329 1557 57 16 0 chr6 97571340 97571532 -51945505 + B2_Mm2 SINE B2 1 195 0 1 1329 296 321 134 22 chr6 97571538 97571672 -51945365 + B1F2 SINE Alu 1 149 0 1 1329 567 266 60 5 chr6 97572926 97573126 -51943911 - L1MA6 LINE L1 -2 6298 6088 1 1329 684 189 8 0 chr6 97573242 97573361 -51943676 - RSINE1 SINE B4 -22 143 24 1 1329 2865 161 33 78 chr6 97573361 97574026 -51943011 - RLTR26 LTR ERVK 0 642 8 1 1329 274 290 49 20 chr6 97574147 97574249 -51942788 - L1MA6 LINE L1 -364 5936 5832 1 1329 907 254 70 52 chr6 97574830 97575158 -51941879 + ORR1E LTR MaLR 24 357 -2 1 1329 185 308 95 9 chr6 97575419 97575524 -51941513 - MIRc SINE MIR -125 143 30 1 1329 330 215 113 0 chr6 97576761 97576903 -51940134 + L1MA4 LINE L1 5737 5906 -1567 1 1329 194 0 39 0 chr6 97578261 97578287 -51938750 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 1329 4414 87 28 2 chr6 97578600 97579213 -51937824 - L1_Mus3 LINE L1 -4 6634 6006 1 1329 351 0 0 0 chr6 97579788 97579827 -51937210 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1329 313 362 73 34 chr6 97580901 97581107 -51935930 + MER20 DNA MER1_type 6 219 0 1 1329 1023 259 7 62 chr6 97581151 97581460 -51935577 - B4 SINE B4 0 292 1 1 1329 201 298 35 35 chr6 97582456 97582543 -51934494 - L2b LINE L2 0 3375 3289 1 1329 2871 69 62 27 chr6 97582632 97583036 -51934001 + L1Md_F2 LINE L1 6165 6582 0 1 1329 393 324 66 56 chr6 97583899 97584187 -51932850 - MER102a DNA MER1_type -39 291 1 1 1329 845 234 72 10 chr6 97584502 97584696 -51932341 + B3 SINE B2 11 216 0 1 1329 436 381 26 0 chr6 97584873 97585062 -51931975 + ID_B1 SINE B4 5 198 -26 1 1329 2282 159 59 27 chr6 97585081 97585487 -51931550 - MTC LTR MaLR 0 421 3 1 1329 1858 215 101 23 chr6 97585492 97585977 -51931060 + Lx9 LINE L1 6759 7281 -363 1 1329 811 202 107 31 chr6 97586106 97586270 -51930767 + Lx9 LINE L1 7304 7484 -160 1 1329 2043 126 34 16 chr6 97586270 97586593 -51930444 - ORR1A4 LTR MaLR 0 329 1 1 1329 811 202 107 31 chr6 97586593 97586745 -51930292 + Lx9 LINE L1 7485 7643 -1 1 1329 268 241 23 57 chr6 97588136 97588224 -51928813 + MLT1A LTR MaLR 14 98 -276 1 1329 383 281 81 109 chr6 97588250 97588534 -51928503 + B4 SINE B4 2 277 -15 1 1329 250 290 0 14 chr6 97588568 97588638 -51928399 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1329 546 16 0 0 chr6 97588638 97588701 -51928336 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1329 27 0 0 0 chr6 97588808 97588835 -51928202 + AT_rich Low_complexity Low_complexity 1 27 0 1 1329 290 286 78 16 chr6 97589432 97589560 -51927477 + B4 SINE B4 70 205 -87 1 1329 423 262 34 47 chr6 97590660 97590808 -51926229 - B1F SINE Alu -3 146 1 1 1329 645 14 0 0 chr6 97591080 97591154 -51925883 + (TC)n Simple_repeat Simple_repeat 2 75 0 1 1329 585 0 0 0 chr6 97591421 97591486 -51925551 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 1329 227 237 8 33 chr6 97592481 97592603 -51924434 + CT-rich Low_complexity Low_complexity 1 119 0 1 1329 542 299 94 16 chr6 97592856 97593101 -51923936 - RMER15 LTR ERVL -14 561 298 1 1329 1157 222 130 33 chr6 97593344 97593675 -51923362 + ORR1D2 LTR MaLR 5 367 -3 1 1329 770 215 0 0 chr6 97594079 97594223 -51922814 - B1_Mur4 SINE Alu -6 144 1 1 1329 1523 228 79 8 chr6 97594449 97594829 -51922208 - MTD LTR MaLR -12 407 1 1 1329 816 251 41 25 chr6 97595144 97595340 -51921697 - B4 SINE B4 -10 282 84 1 1329 408 20 0 0 chr6 97595673 97595722 -51921315 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1329 1411 150 87 0 chr6 97595722 97596138 -51920899 - MT2A LTR ERVL -81 452 1 1 1329 364 279 8 90 chr6 97596969 97597011 -51920026 + ID SINE ID 50 80 -144 1 1329 465 236 14 1 chr6 97597011 97597122 -51919915 + B1_Mur4 SINE Alu 3 115 -5 1 1329 258 268 10 20 chr6 97597429 97597528 -51919509 - MER58D DNA MER1_type -4 382 285 1 1329 2111 77 28 16 chr6 97597768 97598086 -51918951 - RLTRETN_Mm LTR ERVK 0 322 1 1 1329 26232 68 12 13 chr6 97598086 97604529 -51912508 - MMETn-int LTR ERVK -107 7299 1 1 1329 2058 80 28 25 chr6 97604529 97604850 -51912187 - RLTRETN_Mm LTR ERVK 0 322 1 1 1329 387 0 0 0 chr6 97605297 97605340 -51911697 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 1 1329 447 261 51 152 chr6 97606498 97606715 -51910322 - ID_B1 SINE B4 -4 220 26 1 1329 210 162 27 0 chr6 97606760 97606797 -51910240 + (CACCAT)n Simple_repeat Simple_repeat 5 42 0 1 1329 447 19 0 0 chr6 97606797 97606849 -51910188 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1329 205 330 28 9 chr6 97607623 97607730 -51909307 - MIRb SINE MIR -16 252 144 1 1329 183 286 110 77 chr6 97607834 97607925 -51909112 - L2a LINE L2 -3 3384 3291 1 1329 225 325 26 0 chr6 97608042 97608119 -51908918 + ID_B1 SINE B4 126 204 -20 1 1329 406 220 76 0 chr6 97608313 97608431 -51908606 + B3 SINE B2 90 216 0 1 1329 239 310 52 26 chr6 97608541 97608657 -51908380 - L2a LINE L2 -264 3162 3044 1 1329 339 239 79 36 chr6 97608664 97608803 -51908234 + RMER13B LTR ERVK 5 149 -759 1 1329 562 201 160 34 chr6 97608809 97608984 -51908053 + RLTR26 LTR ERVK 213 409 -233 1 1329 3299 182 41 8 chr6 97609066 97609726 -51907311 + RLTR17 LTR ERVK 1 682 -10 1 1329 231 245 8 203 chr6 97609726 97609849 -51907188 + RLTR26 LTR ERVK 544 642 0 1 1329 1364 208 82 77 chr6 97610117 97610247 -51906790 + MTD LTR MaLR 1 130 -289 1 1329 2903 53 0 3 chr6 97610247 97610604 -51906433 + L1Md_F3 LINE L1 6215 6570 -14 1 1329 1364 208 82 77 chr6 97610604 97610890 -51906147 + MTD LTR MaLR 131 419 0 1 1329 430 273 70 0 chr6 97611307 97611450 -51905587 + MER3 DNA MER1_type 47 199 -10 1 1329 603 268 15 82 chr6 97611620 97611815 -51905222 - B4 SINE B4 -108 184 3 1 1329 307 392 67 34 chr6 97611960 97612287 -51904750 + MLT1N2 LTR MaLR 218 555 -7 2 1329 435 347 88 18 chr6 97612334 97612560 -51904477 - MLT1I LTR MaLR 0 411 170 2 1329 13905 55 0 0 chr6 97612782 97614485 -51902552 + L1Md_F2 LINE L1 3884 5586 -297 2 1329 8575 48 1 20 chr6 97614485 97615513 -51901524 + L1Md_F2 LINE L1 5587 6582 0 2 1329 229 262 0 106 chr6 97615906 97616000 -51901037 - Charlie6 DNA MER1_type -1249 2251 2168 2 1329 244 325 31 84 chr6 97617149 97617374 -51899663 + LTR16E2 LTR ERVL 312 524 -44 2 1329 354 197 24 0 chr6 97617374 97617501 -51899536 + (CA)n Simple_repeat Simple_repeat 2 131 0 2 1329 200 200 18 0 chr6 97617557 97617612 -51899425 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1329 387 89 0 0 chr6 97617850 97617906 -51899131 + (CCA)n Simple_repeat Simple_repeat 1 56 0 2 1329 400 245 0 78 chr6 97617921 97618023 -51899014 - PB1D9 SINE Alu -26 94 1 2 1329 279 277 0 0 chr6 97618493 97618558 -51898479 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1329 206 258 15 15 chr6 97619425 97619492 -51897545 + (TATG)n Simple_repeat Simple_repeat 4 70 0 2 1329 342 273 126 53 chr6 97619825 97619976 -51897061 - MLT1J2 LTR MaLR -184 264 103 2 1329 2121 109 281 4 chr6 97619979 97620451 -51896586 - RMER6C LTR ERVK -11 679 1 2 1329 831 93 0 0 chr6 97620639 97620757 -51896280 + (TCCC)n Simple_repeat Simple_repeat 3 120 0 2 1329 199 345 53 33 chr6 97622139 97622289 -51894748 + MIR SINE MIR 84 236 -26 2 1329 2249 157 50 32 chr6 97622543 97622944 -51894093 + MTC LTR MaLR 8 415 -6 2 1329 372 88 0 0 chr6 97622947 97623004 -51894033 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1329 554 262 66 3 chr6 97624447 97624632 -51892405 + L1MA9 LINE L1 6042 6244 -68 2 1329 2245 96 0 19 chr6 97624654 97624974 -51892063 - ORR1A3 LTR MaLR -11 315 2 2 1329 295 226 16 31 chr6 97624977 97625041 -51891996 + B4A SINE B4 210 272 -20 2 1329 436 306 189 28 chr6 97625797 97626193 -51890844 + L1M4b LINE L1 1287 1746 -5588 2 1329 1013 282 36 34 chr6 97626232 97626643 -51890394 + L1MA7 LINE L1 5596 6007 -284 2 1329 2085 100 37 0 chr6 97626644 97626943 -51890094 - ORR1A2 LTR MaLR 0 327 18 2 1329 326 253 0 44 chr6 97627082 97627173 -51889864 + L1M4b LINE L1 4607 4693 -2313 2 1329 1199 88 0 0 chr6 97627629 97627776 -51889261 + B1_Mus1 SINE Alu 1 147 -1 2 1329 357 297 68 62 chr6 97628234 97628388 -51888649 + ORR1E LTR MaLR 15 174 -185 2 1329 2912 181 69 64 chr6 97628388 97628996 -51888041 - RMER19C LTR ERVK 0 611 1 2 1329 357 297 68 62 chr6 97628996 97629017 -51888020 + ORR1E LTR MaLR 175 191 -168 2 1329 2488 167 5 10 chr6 97629194 97629588 -51887449 - ORR1B1 LTR MaLR -2 392 1 2 1329 1326 67 0 0 chr6 97629836 97630014 -51887023 + (GGGGA)n Simple_repeat Simple_repeat 1 178 0 2 1329 482 0 138 0 chr6 97630018 97630156 -51886881 + (GGAA)n Simple_repeat Simple_repeat 2 158 0 2 1329 23 54 0 0 chr6 97634710 97634747 -51882290 + AT_rich Low_complexity Low_complexity 1 37 0 2 1329 330 26 0 0 chr6 97635002 97635041 -51881996 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 1329 1507 24 0 0 chr6 97635042 97635211 -51881826 - L1Md_F2 LINE L1 -14 6568 6400 2 1329 270 173 0 0 chr6 97635218 97635270 -51881767 + L1Md_F LINE L1 267 318 -6201 2 1329 564 233 8 33 chr6 97635540 97635660 -51881377 + PB1D10 SINE Alu 1 117 0 2 1329 235 271 0 0 chr6 97635815 97635874 -51881163 + L1M5 LINE L1 5459 5517 -656 2 1329 574 263 105 26 chr6 97636069 97636127 -51880910 - B3 SINE B2 -10 206 147 2 1329 912 87 0 0 chr6 97636127 97636254 -51880783 + (TG)n Simple_repeat Simple_repeat 1 127 0 2 1329 574 263 105 26 chr6 97636254 97636386 -51880651 - B3 SINE B2 -70 146 2 2 1329 207 0 0 0 chr6 97636885 97636908 -51880129 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1329 600 326 16 26 chr6 97637978 97638167 -51878870 + B3A SINE B2 4 190 -8 2 1329 258 32 0 0 chr6 97638661 97638692 -51878345 + (CTG)n Simple_repeat Simple_repeat 2 32 0 2 1329 1167 78 0 27 chr6 97638701 97638885 -51878152 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 2 1329 405 0 0 0 chr6 97638885 97638930 -51878107 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1329 450 94 0 0 chr6 97638930 97638994 -51878043 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1329 266 354 30 20 chr6 97639032 97639133 -51877904 + LTR16C LTR ERVL 227 328 -161 2 1329 298 225 62 0 chr6 97639293 97639373 -51877664 - LTR33A LTR ERVL -4 516 432 2 1329 562 331 18 0 chr6 97639493 97639662 -51877375 - B3A SINE B2 -16 182 11 2 1329 505 318 50 35 chr6 97639845 97639918 -51877119 + MER63A DNA AcHobo 6 78 -132 2 1329 4539 146 84 1 chr6 97639918 97640599 -51876438 + RMER19A LTR ERVK 1 737 0 2 1329 505 318 50 35 chr6 97640599 97640727 -51876310 + MER63A DNA AcHobo 79 210 0 2 1329 1375 211 141 14 chr6 97640765 97641120 -51875917 - MTC LTR MaLR -2 419 20 2 1329 1407 142 5 5 chr6 97641521 97641733 -51875304 - URR1B DNA MER1_type -13 212 1 2 1329 248 293 0 0 chr6 97642106 97642164 -51874873 + Charlie1a DNA MER1_type 185 242 -1213 2 1329 23 33 0 0 chr6 97642582 97642612 -51874425 + AT_rich Low_complexity Low_complexity 1 30 0 2 1329 24 67 0 0 chr6 97642629 97642674 -51874363 + AT_rich Low_complexity Low_complexity 1 45 0 2 1329 31 26 0 0 chr6 97642745 97642783 -51874254 + AT_rich Low_complexity Low_complexity 1 38 0 2 1329 529 184 197 75 chr6 97643671 97643787 -51873250 - L1_Mur3 LINE L1 -148 5732 5598 2 1329 1156 135 16 42 chr6 97643787 97643980 -51873057 - B2_Mm2 SINE B2 -7 188 1 2 1329 529 184 197 75 chr6 97643980 97644010 -51873027 - L1_Mur3 LINE L1 -283 5597 5568 2 1329 6424 66 17 2 chr6 97644188 97645007 -51872030 - L1_Mus2 LINE L1 -1 6565 5735 2 1329 221 317 98 116 chr6 97645113 97645199 -51871838 + MIRb SINE MIR 34 114 -154 2 1329 533 280 122 15 chr6 97645199 97645395 -51871642 - ID_B1 SINE B4 -7 217 1 2 1329 221 317 98 116 chr6 97645395 97645533 -51871504 + MIRb SINE MIR 115 254 -14 2 1329 5069 49 0 23 chr6 97645894 97646502 -51870535 + L1Md_F2 LINE L1 5988 6581 -1 2 1329 357 325 17 0 chr6 97646747 97646864 -51870173 + RMER15-int LTR ERVL 4295 4413 -586 2 1329 219 103 0 0 chr6 97646864 97646903 -51870134 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1329 416 197 67 52 chr6 97646905 97647039 -51869998 - RLTR40 LTR ERVK -537 280 145 2 1329 334 244 26 0 chr6 97647051 97647129 -51869908 - RLTR40 LTR ERVK -719 98 19 2 1329 299 319 35 0 chr6 97647137 97647250 -51869787 + MER2 DNA MER2_type 178 294 -51 2 1329 232 296 212 25 chr6 97647308 97647426 -51869611 - MIR SINE MIR -108 154 15 2 1329 254 222 28 75 chr6 97647522 97647629 -51869408 + Charlie9 DNA MER1_type 2664 2741 -16 2 1329 741 134 16 9 chr6 97647731 97647855 -51869182 - B1_Mur1 SINE Alu 0 149 26 2 1329 1521 262 48 18 chr6 97647993 97648385 -51868652 + MTD LTR MaLR 4 407 -12 2 1330 188 342 51 0 chr6 97649198 97649277 -51867760 + L4 LINE RTE 1147 1229 -800 2 1330 663 343 44 4 chr6 97649497 97649749 -51867288 + MamRep137 DNA TcMar? 126 387 -57 2 1330 261 0 0 0 chr6 97650282 97650311 -51866726 + (CCTTG)n Simple_repeat Simple_repeat 5 33 0 2 1330 1568 240 53 53 chr6 97650802 97650961 -51866076 - MTD LTR MaLR 0 419 250 2 1330 3063 134 15 11 chr6 97650961 97651422 -51865615 + Lx4A LINE L1 6594 7056 -2 2 1330 1568 240 53 53 chr6 97651422 97651675 -51865362 - MTD LTR MaLR -170 249 7 2 1330 231 353 69 0 chr6 97652022 97652124 -51864913 - MER5A DNA MER1_type -58 131 23 2 1330 250 368 34 11 chr6 97652522 97652610 -51864427 - MER81 DNA AcHobo -21 93 4 2 1330 356 0 23 0 chr6 97652696 97652740 -51864297 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 2 1330 381 251 191 27 chr6 97652772 97652960 -51864077 + MLT1D LTR MaLR 1 219 -286 2 1330 275 191 0 14 chr6 97653060 97653129 -51863908 + CT-rich Low_complexity Low_complexity 1 68 0 2 1330 573 276 5 115 chr6 97653622 97653831 -51863206 - B3A SINE B2 -11 187 2 2 1330 897 128 0 0 chr6 97654167 97654315 -51862722 + (TCCC)n Simple_repeat Simple_repeat 4 151 0 2 1330 329 43 21 0 chr6 97655014 97655061 -51861976 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1330 1640 134 9 0 chr6 97655082 97655306 -51861731 - URR1A DNA MER1_type 0 226 1 2 1330 244 338 0 26 chr6 97655736 97655812 -51861225 + ID4_ SINE ID 8 81 -2 2 1330 393 242 19 172 chr6 97656007 97656038 -51860999 - B2_Mm1a SINE B2 -11 182 161 2 1330 276 30 0 0 chr6 97656038 97656071 -51860966 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1330 938 224 30 28 chr6 97656071 97656254 -51860783 - B3 SINE B2 -29 187 1 2 1330 3057 176 15 56 chr6 97656901 97657495 -51859542 + RMER15 LTR ERVL 1 570 -5 2 1330 690 250 23 81 chr6 97657687 97657825 -51859212 + RSINE1 SINE B4 2 141 -24 2 1330 1065 121 0 0 chr6 97657825 97657869 -51859168 + (CA)n Simple_repeat Simple_repeat 1 44 -186 2 1330 1065 121 0 0 chr6 97657875 97658055 -51858982 + (CA)n Simple_repeat Simple_repeat 45 230 0 2 1330 690 250 23 81 chr6 97658055 97658083 -51858954 + RSINE1 SINE B4 142 165 0 2 1330 225 65 0 0 chr6 97658087 97658118 -51858919 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1330 219 69 0 0 chr6 97658182 97658211 -51858826 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1330 24 0 0 0 chr6 97658299 97658323 -51858714 + AT_rich Low_complexity Low_complexity 1 24 0 2 1330 236 359 75 15 chr6 97658621 97658754 -51858283 + MIR SINE MIR 59 199 -63 2 1330 507 241 0 151 chr6 97658813 97658979 -51858058 + MTC-int LTR MaLR 526 666 -592 2 1330 749 246 89 69 chr6 97658950 97659232 -51857805 + MTD LTR MaLR 106 396 0 2 1330 2210 174 54 5 chr6 97659451 97659839 -51857198 + MTD LTR MaLR 13 419 0 2 1330 409 270 0 0 chr6 97660994 97661083 -51855954 + B1F SINE Alu 6 94 -55 2 1330 324 0 0 0 chr6 97661091 97661127 -51855910 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 2 1330 909 118 0 0 chr6 97661138 97661353 -51855684 + (TAGA)n Simple_repeat Simple_repeat 1 215 0 2 1330 295 326 22 50 chr6 97661399 97661538 -51855499 - B4 SINE B4 -114 178 44 2 1330 214 345 68 17 chr6 97663138 97663256 -51853781 + MIR SINE MIR 120 243 -19 2 1330 1300 45 0 0 chr6 97663384 97663541 -51853496 + B2_Mm1t SINE B2 4 160 -33 2 1330 207 0 0 0 chr6 97663541 97663564 -51853473 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 1330 288 319 11 32 chr6 97663895 97663989 -51853048 - URR1B DNA MER1_type -116 109 18 3 1330 301 357 50 21 chr6 97664516 97664756 -51852281 - RLTR42-int LTR ERVK -4123 1399 1153 3 1330 994 158 0 14 chr6 97665313 97665461 -51851576 + B1_Mus1 SINE Alu 1 146 -2 3 1330 488 241 7 131 chr6 97665707 97665860 -51851177 + B1_Mur1 SINE Alu 10 143 -6 3 1330 555 227 33 66 chr6 97665946 97666097 -51850940 - B1F SINE Alu -3 146 1 3 1330 853 292 19 9 chr6 97666590 97666801 -51850236 - ID_B1 SINE B4 -6 218 6 3 1330 803 250 48 25 chr6 97666805 97667054 -51849983 + MER2 DNA MER2_type 56 316 -29 3 1330 212 259 0 33 chr6 97667228 97667288 -51849749 + CT-rich Low_complexity Low_complexity 2 59 0 3 1330 752 232 37 8 chr6 97667324 97667527 -51849510 - L1MA4 LINE L1 -382 5918 5700 3 1330 186 294 0 0 chr6 97667606 97667657 -51849380 + L2b LINE L2 3121 3171 -204 3 1330 199 291 144 10 chr6 97668959 97669063 -51847974 - MIRb SINE MIR -8 260 143 3 1330 249 33 0 0 chr6 97669402 97669432 -51847605 + (TCC)n Simple_repeat Simple_repeat 2 31 0 3 1330 901 281 46 42 chr6 97669575 97669650 -51847387 - B4 SINE B4 -2 290 225 3 1330 318 50 0 0 chr6 97669650 97669690 -51847347 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 3 1330 901 281 46 42 chr6 97669690 97669897 -51847140 - B4 SINE B4 -68 224 8 3 1330 396 0 0 0 chr6 97670002 97670046 -51846991 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1330 1699 266 107 13 chr6 97670047 97670591 -51846446 - Lx8 LINE L1 -39 7434 6840 3 1330 521 278 165 19 chr6 97670644 97670802 -51846235 + B3A SINE B2 2 182 -16 3 1330 203 204 20 0 chr6 97670822 97670871 -51846166 + A-rich Low_complexity Low_complexity 2 51 0 3 1330 1689 270 39 29 chr6 97670876 97671464 -51845573 + Lx7 LINE L1 5592 6185 -1511 3 1330 377 229 8 22 chr6 97671500 97671634 -51845403 + (TA)n Simple_repeat Simple_repeat 1 132 0 3 1330 1245 291 23 20 chr6 97671639 97671993 -51845044 + Lx8 LINE L1 6277 6631 -842 3 1330 2097 136 0 3 chr6 97671993 97672332 -51844705 + ORR1A1 LTR MaLR 1 338 -8 3 1330 208 219 0 0 chr6 97672741 97672782 -51844255 + (TGG)n Simple_repeat Simple_repeat 1 41 0 3 1330 888 101 0 0 chr6 97672785 97672914 -51844123 + (TG)n Simple_repeat Simple_repeat 2 130 0 3 1330 3455 161 70 14 chr6 97672959 97673597 -51843440 + RLTR17 LTR ERVK 1 677 -15 3 1330 243 0 0 0 chr6 97673597 97673624 -51843413 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1330 3455 161 70 14 chr6 97673624 97673640 -51843397 + RLTR17 LTR ERVK 678 692 0 3 1330 3041 35 0 0 chr6 97673842 97674188 -51842849 - ORR1A0 LTR MaLR 0 346 1 3 1330 468 308 154 30 chr6 97674356 97674661 -51842376 + MLT1A0 LTR MaLR 23 365 0 3 1330 21 0 0 0 chr6 97675219 97675240 -51841797 + AT_rich Low_complexity Low_complexity 1 21 0 3 1330 247 321 62 0 chr6 97675616 97675697 -51841340 + B4A SINE B4 82 167 -125 3 1330 491 239 9 0 chr6 97675625 97675734 -51841303 + PB1D10 SINE Alu 7 116 -1 3 1330 1199 59 29 9 chr6 97676290 97676636 -51840401 + (GA)n Simple_repeat Simple_repeat 1 353 0 3 1330 842 100 0 53 chr6 97676668 97676794 -51840243 + polypurine Low_complexity Low_complexity 1 119 0 3 1330 1123 69 29 0 chr6 97676794 97676969 -51840068 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1330 842 100 0 53 chr6 97676969 97677032 -51840005 + polypurine Low_complexity Low_complexity 120 180 0 3 1330 1096 45 22 22 chr6 97677067 97677247 -51839790 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1330 276 246 15 0 chr6 97677474 97677539 -51839498 - B3A SINE B2 -89 109 44 3 1330 571 87 22 0 chr6 97679114 97679206 -51837831 - L1Md_T LINE L1 0 6582 6489 3 1330 764 281 32 54 chr6 97680091 97680369 -51836668 + B4 SINE B4 3 274 -18 3 1330 279 0 0 0 chr6 97680380 97680411 -51836626 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1330 995 9 0 0 chr6 97680432 97680539 -51836498 + U6 snRNA snRNA 1 107 0 3 1330 2266 59 36 0 chr6 97680539 97680846 -51836191 + L1Md_F2 LINE L1 6265 6582 0 3 1330 510 61 0 0 chr6 97681192 97681258 -51835779 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1330 369 62 0 0 chr6 97681260 97681308 -51835729 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1330 913 254 46 35 chr6 97681411 97681696 -51835341 - B4A SINE B4 -4 288 1 3 1330 692 213 94 6 chr6 97681696 97681866 -51835171 - B4 SINE B4 -66 226 42 3 1330 232 191 66 105 chr6 97681858 97681934 -51835103 + B4A SINE B4 103 175 -117 3 1330 257 314 79 36 chr6 97681928 97682067 -51834970 + B3 SINE B2 67 211 -5 3 1330 2083 241 68 28 chr6 97682279 97682878 -51834159 - Lx7 LINE L1 -1452 6244 5622 3 1330 626 279 46 102 chr6 97683058 97683429 -51833608 + ORR1E LTR MaLR 1 350 -9 3 1330 369 0 0 0 chr6 97684213 97684254 -51832783 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1330 1040 69 14 0 chr6 97684254 97684399 -51832638 + (TCCCC)n Simple_repeat Simple_repeat 2 148 0 3 1330 229 299 15 15 chr6 97684534 97684602 -51832435 + ID4 SINE ID 2 69 -14 3 1330 307 247 180 0 chr6 97684603 97684692 -51832345 + PB1D7 SINE Alu 3 107 -13 3 1330 444 241 15 114 chr6 97685279 97685410 -51831627 - B1F SINE Alu -1 119 2 3 1330 319 230 27 13 chr6 97685969 97686044 -51830993 + MER44B DNA MER2_type 22 97 -453 3 1330 1811 218 89 69 chr6 97686491 97687126 -51829911 + RMER1B Other Other 1 593 -473 3 1330 748 146 108 0 chr6 97687133 97687291 -51829746 + RMER1A Other Other 850 1024 -6 3 1330 865 305 83 63 chr6 97687299 97687744 -51829293 + MER44B DNA MER2_type 96 549 -1 3 1330 784 267 52 59 chr6 97688102 97688392 -51828645 - B4A SINE B4 0 292 5 3 1330 241 273 0 61 chr6 97688566 97688648 -51828389 + MIRm SINE MIR 80 156 -120 3 1330 592 227 0 0 chr6 97689439 97689571 -51827466 - B1F2 SINE Alu -3 146 15 3 1330 414 248 14 57 chr6 97689446 97689587 -51827450 - ID_B1 SINE B4 -10 214 80 3 1330 614 267 66 26 chr6 97689797 97690024 -51827013 + B4A SINE B4 2 237 -55 3 1330 270 0 0 0 chr6 97690029 97690059 -51826978 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1330 767 280 31 51 chr6 97691335 97691629 -51825408 + B4 SINE B4 5 292 0 3 1330 25 31 0 0 chr6 97692236 97692268 -51824769 + AT_rich Low_complexity Low_complexity 1 32 0 3 1330 873 238 78 0 chr6 97692286 97692492 -51824545 - ID_B1 SINE B4 -2 222 1 3 1330 209 171 0 0 chr6 97693074 97693109 -51823928 + G-rich Low_complexity Low_complexity 1 35 0 3 1330 353 239 291 46 chr6 97693213 97693450 -51823587 + MLT1D LTR MaLR 208 502 -3 3 1330 325 300 95 53 chr6 97694068 97694237 -51822800 - LTR50 LTR ERVL -613 182 7 3 1330 318 148 0 0 chr6 97694718 97694772 -51822265 + (CCCCCT)n Simple_repeat Simple_repeat 1 54 0 3 1330 249 298 37 28 chr6 97695002 97695109 -51821928 + B4 SINE B4 1 108 -184 3 1330 269 293 0 0 chr6 97695105 97695180 -51821857 + RSINE1 SINE B4 67 141 -24 3 1330 297 0 0 0 chr6 97695185 97695218 -51821819 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1330 315 0 0 0 chr6 97695218 97695252 -51821785 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1330 638 292 64 34 chr6 97695264 97695530 -51821507 + B4A SINE B4 1 274 -18 3 1330 218 353 0 0 chr6 97695557 97695625 -51821412 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1330 196 122 0 58 chr6 97695741 97695793 -51821244 + (CAGAGA)n Simple_repeat Simple_repeat 4 52 0 3 1330 3975 170 75 74 chr6 97695825 97696714 -51820323 + RMER19B LTR ERVK 1 890 -12 3 1330 13189 143 10 30 chr6 97696806 97698686 -51818351 + L1_Mur1 LINE L1 2390 4265 -1621 3 1330 456 19 0 0 chr6 97698686 97698739 -51818298 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1330 13189 143 10 30 chr6 97698739 97698793 -51818244 + L1_Mur1 LINE L1 4266 4268 -1618 3 1330 1720 178 19 3 chr6 97698793 97699109 -51817928 - Lx LINE L1 -13 6641 6321 3 1330 13189 143 10 30 chr6 97699109 97699511 -51817526 + L1_Mur1 LINE L1 4269 4680 -1206 3 1330 3951 139 3 14 chr6 97699498 97700147 -51816890 + Lx5 LINE L1 3827 4468 -1409 3 1330 2181 158 31 7 chr6 97700147 97700568 -51816469 - RMER12 LTR ERVK -891 431 1 3 1330 5597 212 63 29 chr6 97700568 97701821 -51815216 + Lx5 LINE L1 5503 6898 -152 3 1330 330 67 0 0 chr6 97701821 97701866 -51815171 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1330 5597 199 49 30 chr6 97701866 97702013 -51815024 + Lx5 LINE L1 6899 7048 -2 3 1330 366 85 0 0 chr6 97702014 97702073 -51814964 + (CATA)n Simple_repeat Simple_repeat 2 60 0 3 1330 180 0 0 0 chr6 97702073 97702093 -51814944 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 3 1330 746 293 24 10 chr6 97702106 97702313 -51814724 + B3 SINE B2 2 211 -5 3 1330 769 218 133 0 chr6 97702689 97702877 -51814160 + ID_B1 SINE B4 5 217 -7 3 1330 1583 43 0 0 chr6 97703321 97703506 -51813531 - B2_Mm1a SINE B2 -8 185 1 3 1330 686 225 58 34 chr6 97703728 97703935 -51813102 + B3 SINE B2 5 216 0 3 1330 204 135 0 0 chr6 97704969 97705006 -51812031 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 3 1330 234 0 0 0 chr6 97705399 97705425 -51811612 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 1330 294 324 19 10 chr6 97705791 97705894 -51811143 + MER81 DNA AcHobo 2 105 -9 3 1330 465 19 0 0 chr6 97706970 97707024 -51810013 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1330 742 272 81 14 chr6 97707104 97707313 -51809724 - B4A SINE B4 -68 224 2 3 1330 246 319 14 0 chr6 97707381 97707450 -51809587 - BLACKJACK DNA AcHobo -2873 71 2 3 1330 724 234 213 20 chr6 97707925 97708169 -51808868 + B4 SINE B4 2 292 0 3 1330 324 0 0 0 chr6 97708866 97708902 -51808135 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1330 410 288 23 23 chr6 97709693 97709821 -51807216 + ORR1E LTR MaLR 1 128 -231 3 1330 263 234 158 11 chr6 97709884 97709979 -51807058 + ORR1E LTR MaLR 261 369 -10 3 1330 488 225 77 35 chr6 97710212 97710355 -51806682 + B1F SINE Alu 1 149 0 4 1330 274 294 0 0 chr6 97710387 97710455 -51806582 + ID4_ SINE ID 15 82 -1 4 1330 499 231 36 29 chr6 97712123 97712261 -51804776 - MTEa LTR MaLR -8 371 233 4 1330 764 216 53 59 chr6 97712691 97712878 -51804159 - B2_Mm2 SINE B2 -9 186 1 4 1330 1553 104 0 17 chr6 97713048 97713282 -51803755 + RMER13A LTR ERVK 1 230 -630 4 1330 1167 262 40 30 chr6 97714353 97714556 -51802481 + MTEa LTR MaLR 3 200 -179 4 1330 507 17 0 0 chr6 97714556 97714616 -51802421 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1330 1167 262 40 30 chr6 97714616 97714785 -51802252 + MTEa LTR MaLR 201 378 -1 4 1330 1115 104 0 6 chr6 97715375 97715549 -51801488 + (GAAA)n Simple_repeat Simple_repeat 3 175 0 4 1330 839 320 17 24 chr6 97715585 97715879 -51801158 + B4A SINE B4 1 292 0 4 1330 403 225 8 24 chr6 97715931 97716054 -51800983 + G-rich Low_complexity Low_complexity 2 122 0 4 1330 456 19 0 0 chr6 97717559 97717612 -51799425 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1330 522 0 0 0 chr6 97718573 97718631 -51798406 + (TTA)n Simple_repeat Simple_repeat 2 59 0 4 1330 713 61 10 0 chr6 97718855 97718954 -51798083 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 4 1330 604 203 0 48 chr6 97718959 97719083 -51797954 - B1_Mur4 SINE Alu -32 118 1 4 1330 255 295 0 138 chr6 97718969 97719099 -51797938 - MT2B LTR ERVL -341 260 149 4 1330 288 190 0 0 chr6 97720166 97720245 -51796792 + CT-rich Low_complexity Low_complexity 1 79 0 4 1330 924 146 0 14 chr6 97720253 97720392 -51796645 - B1_Mus1 SINE Alu -7 141 5 4 1330 396 0 0 0 chr6 97721157 97721201 -51795836 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1330 345 280 219 15 chr6 97721837 97722033 -51795004 + MLT1H2 LTR MaLR 68 303 -186 4 1330 1380 161 0 9 chr6 97722095 97722320 -51794717 - URR1B DNA MER1_type 0 225 3 4 1330 236 293 69 20 chr6 97722479 97722580 -51794457 + ORR1D2 LTR MaLR 5 110 -260 4 1330 228 275 37 12 chr6 97723251 97723332 -51793705 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 4 1330 265 288 0 0 chr6 97723371 97723430 -51793607 + polypurine Low_complexity Low_complexity 3 61 0 4 1330 964 277 27 4 chr6 97723430 97723691 -51793346 - MT2A LTR ERVL -68 465 199 4 1330 830 142 21 6 chr6 97724086 97724231 -51792806 - B1_Mur4 SINE Alu 0 150 9 4 1330 22 0 0 0 chr6 97724485 97724507 -51792530 + AT_rich Low_complexity Low_complexity 1 22 0 4 1330 2511 86 3 3 chr6 97724699 97725026 -51792011 - ORR1A2 LTR MaLR 0 327 1 4 1330 243 154 231 0 chr6 97725365 97725443 -51791594 + ORR1B1 LTR MaLR 1 96 -298 4 1330 1086 31 0 0 chr6 97726002 97726132 -51790905 + (TC)n Simple_repeat Simple_repeat 1 130 0 4 1330 333 0 0 0 chr6 97726132 97726168 -51790869 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1330 769 267 51 19 chr6 97726427 97726641 -51790396 - ID_B1 SINE B4 0 224 4 4 1330 300 319 113 0 chr6 97726951 97727092 -51789945 - LTR16B2 LTR ERVL -7 456 300 4 1330 379 300 0 8 chr6 97727180 97727301 -51789736 - LTR16B2 LTR ERVL -342 120 1 4 1330 574 256 8 0 chr6 97727591 97727716 -51789321 + B4 SINE B4 107 232 -60 4 1330 915 215 57 16 chr6 97727724 97727918 -51789119 + B3 SINE B2 8 209 -7 4 1330 904 155 14 21 chr6 97727925 97728070 -51788967 - B1_Mur3 SINE Alu -5 144 1 4 1330 25 31 0 0 chr6 97728070 97728102 -51788935 + AT_rich Low_complexity Low_complexity 1 32 0 4 1330 313 293 13 0 chr6 97728106 97728181 -51788856 + B4 SINE B4 211 286 -6 4 1330 437 235 26 0 chr6 97728443 97728596 -51788441 + (TA)n Simple_repeat Simple_repeat 2 158 0 4 1330 287 235 47 0 chr6 97728946 97729031 -51788006 - RMER15 LTR ERVL -41 534 446 4 1330 183 42 0 0 chr6 97729352 97729376 -51787661 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1330 696 87 0 11 chr6 97729432 97729525 -51787512 + L1Md_F2 LINE L1 5495 5586 -297 4 1330 7585 40 65 3 chr6 97729525 97730452 -51786585 + L1Md_F2 LINE L1 5587 6570 -12 4 1330 1162 62 0 14 chr6 97730458 97730606 -51786431 + B1_Mus2 SINE Alu 1 146 -1 4 1330 294 266 17 17 chr6 97730619 97730791 -51786246 + (TA)n Simple_repeat Simple_repeat 1 172 0 4 1330 202 55 0 53 chr6 97731086 97731124 -51785913 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 4 1330 184 59 59 0 chr6 97731782 97731816 -51785221 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 4 1330 447 296 35 82 chr6 97731833 97732127 -51784910 + B4A SINE B4 2 292 0 4 1330 441 0 0 0 chr6 97732906 97732955 -51784082 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 4 1330 207 0 0 0 chr6 97733107 97733130 -51783907 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1330 3116 20 0 0 chr6 97733262 97733608 -51783429 - ORR1A0 LTR MaLR 0 346 1 4 1330 14346 51 7 1 chr6 97733608 97735389 -51781648 - ORR1A0-int LTR MaLR 0 1792 1 4 1330 2904 24 30 0 chr6 97735389 97735725 -51781312 - ORR1A0 LTR MaLR 0 346 1 4 1330 400 230 60 0 chr6 97735792 97735892 -51781145 - B1F SINE Alu -22 127 22 4 1330 250 200 162 0 chr6 97736078 97736158 -51780879 - L1MD3 LINE L1 -987 7008 6916 4 1330 207 0 0 0 chr6 97736373 97736396 -51780641 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1330 270 0 0 0 chr6 97736681 97736711 -51780326 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 4 1330 470 182 0 9 chr6 97736798 97736909 -51780128 + CT-rich Low_complexity Low_complexity 2 111 0 4 1330 22 56 0 0 chr6 97737720 97737756 -51779281 + AT_rich Low_complexity Low_complexity 1 36 0 4 1330 730 282 10 5 chr6 97737920 97738127 -51778910 + ID_B1 SINE B4 5 212 -12 4 1330 387 83 0 0 chr6 97738128 97738188 -51778849 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1330 320 342 103 93 chr6 97738491 97738900 -51778137 - LTR33A LTR ERVL -55 465 53 4 1330 539 262 74 34 chr6 97740332 97740523 -51776514 - Lx5 LINE L1 -92 7368 7202 4 1330 383 283 306 0 chr6 97740701 97740881 -51776156 + RMER1A Other Other 16 250 -780 4 1330 3160 250 164 21 chr6 97740883 97741779 -51775258 + RMER1A Other Other 1 1024 -6 4 1330 1283 269 89 2 chr6 97741787 97742124 -51774913 - Lx5 LINE L1 -580 6880 6455 4 1330 633 27 0 0 chr6 97742124 97742199 -51774838 + (TCC)n Simple_repeat Simple_repeat 3 77 0 4 1330 620 307 71 44 chr6 97742199 97742371 -51774666 - Lx5 LINE L1 -705 6755 6578 4 1330 321 264 54 104 chr6 97742555 97742796 -51774241 - L1MA5 LINE L1 -271 6029 5801 4 1330 393 22 0 0 chr6 97742798 97742844 -51774193 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1330 237 221 48 78 chr6 97742949 97743052 -51773985 - PB1D10 SINE Alu -17 100 1 4 1330 676 269 114 21 chr6 97743096 97743430 -51773607 - L1MA5 LINE L1 -547 5753 5389 4 1330 30 0 0 44 chr6 97743430 97743446 -51773591 + AT_rich Low_complexity Low_complexity 1 16 0 4 1330 424 186 143 10 chr6 97743446 97743544 -51773493 + PB1D9 SINE Alu 1 111 -9 4 1330 30 0 0 44 chr6 97743544 97743572 -51773465 + AT_rich Low_complexity Low_complexity 1 27 0 4 1330 449 330 54 50 chr6 97743580 97743877 -51773160 - L1MA6 LINE L1 -3 6297 6000 4 1330 1607 240 37 42 chr6 97744187 97744618 -51772419 - Lx8 LINE L1 -311 7162 6734 4 1330 246 289 48 0 chr6 97745056 97745139 -51771898 - MLT1N2 LTR MaLR -24 538 452 4 1330 597 293 46 20 chr6 97745714 97745909 -51771128 + B3 SINE B2 16 215 -1 4 1330 27 49 0 0 chr6 97746152 97746193 -51770844 + AT_rich Low_complexity Low_complexity 1 41 0 4 1330 487 311 0 0 chr6 97746269 97746404 -51770633 + ID_B1 SINE B4 88 222 -2 4 1330 1241 145 224 32 chr6 97746621 97746934 -51770103 - ORR1D1 LTR MaLR -1 373 1 4 1330 318 218 22 44 chr6 97748310 97748401 -51768636 + MTEb LTR MaLR 281 369 -10 4 1330 23 54 0 0 chr6 97749373 97749410 -51767627 + AT_rich Low_complexity Low_complexity 1 37 0 4 1330 584 191 0 0 chr6 97749432 97749537 -51767500 + ID_B1 SINE B4 109 213 -11 4 1330 405 176 110 9 chr6 97750085 97750194 -51766843 - Lx9 LINE L1 -7 7637 7518 4 1330 432 0 0 0 chr6 97750194 97750242 -51766795 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1330 425 277 0 56 chr6 97750389 97750515 -51766522 + Lx8 LINE L1 7121 7239 -234 4 1330 254 250 0 152 chr6 97750936 97751035 -51766002 + MT2B LTR ERVL 157 240 -361 4 1330 520 224 25 7 chr6 97750950 97751065 -51765972 + B1_Mur4 SINE Alu 2 127 0 4 1330 312 329 13 47 chr6 97751708 97751858 -51765179 + RSINE1 SINE B4 4 148 -17 4 1330 747 295 79 32 chr6 97751963 97752240 -51764797 + B4 SINE B4 3 292 0 4 1330 249 277 0 15 chr6 97752278 97752344 -51764693 + tRNA-Gly-GGY tRNA tRNA 7 71 -3 4 1330 235 343 10 20 chr6 97752344 97752378 -51764659 + ID_B1 SINE B4 13 111 -113 4 1330 24 0 0 0 chr6 97752383 97752407 -51764630 + AT_rich Low_complexity Low_complexity 1 24 0 4 1330 898 224 19 19 chr6 97752627 97752836 -51764201 + B3 SINE B2 1 209 -7 4 1330 325 300 39 55 chr6 97754665 97754792 -51762245 - B1F SINE Alu -18 131 7 4 1330 735 280 15 30 chr6 97754678 97754877 -51762160 - ID_B1 SINE B4 -28 196 1 4 1330 342 0 0 0 chr6 97755030 97755068 -51761969 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 4 1330 438 340 31 19 chr6 97755768 97755930 -51761107 - RSINE1 SINE B4 0 165 2 4 1330 251 337 12 18 chr6 97755971 97756092 -51760945 - MIR SINE MIR -82 186 60 4 1330 23 0 0 0 chr6 97757031 97757054 -51759983 + GC_rich Low_complexity Low_complexity 1 23 0 4 1330 675 132 0 0 chr6 97757950 97758064 -51758973 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 4 1330 357 24 0 0 chr6 97758932 97758974 -51758063 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1330 337 348 77 11 chr6 97759512 97759528 -51757509 + L2a LINE L2 2615 2630 -789 4 1330 1498 116 4 22 chr6 97759528 97759757 -51757280 + URR1A DNA MER1_type 1 225 -1 4 1330 337 348 77 11 chr6 97759757 97759923 -51757114 + L2a LINE L2 2631 2809 -610 4 1330 845 266 69 22 chr6 97759942 97760219 -51756818 + B4A SINE B4 3 292 0 4 1330 264 278 55 9 chr6 97760327 97760436 -51756601 + MER20 DNA MER1_type 72 185 -34 4 1330 194 316 148 15 chr6 97760442 97760577 -51756460 + L2a LINE L2 2806 2958 -461 4 1330 660 181 0 0 chr6 97760864 97760991 -51756046 + (TA)n Simple_repeat Simple_repeat 1 127 0 5 1330 309 135 19 0 chr6 97760991 97761043 -51755994 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1330 252 59 0 0 chr6 97761043 97761077 -51755960 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1330 235 254 0 31 chr6 97761088 97761153 -51755884 + L2a LINE L2 3314 3376 -50 4 1330 213 195 12 38 chr6 97762069 97762134 -51754903 + CT-rich Low_complexity Low_complexity 15 79 0 5 1330 3464 15 10 0 chr6 97762134 97762526 -51754511 + MTA_Mm LTR MaLR 1 396 0 5 1330 9775 16 1 0 chr6 97762526 97763623 -51753414 + MTA_Mm-int LTR MaLR 1 1098 0 5 1330 3530 18 5 0 chr6 97763623 97764017 -51753020 + MTA_Mm LTR MaLR 1 396 0 5 1330 213 195 12 38 chr6 97764017 97764029 -51753008 + polypyrimidine Low_complexity Low_complexity 5 14 0 5 1330 219 224 0 33 chr6 97764063 97764123 -51752914 + T-rich Low_complexity Low_complexity 3 60 0 5 1330 302 295 37 37 chr6 97764856 97764990 -51752047 - MIR SINE MIR -15 247 114 5 1330 197 340 81 61 chr6 97765402 97765599 -51751438 + MIRb SINE MIR 59 259 -9 5 1330 22 0 0 0 chr6 97766100 97766122 -51750915 + AT_rich Low_complexity Low_complexity 1 22 0 5 1330 292 222 14 14 chr6 97767397 97767470 -51749567 + MIRc SINE MIR 72 144 -124 5 1330 316 296 33 42 chr6 97770116 97770236 -51746801 - MER5A DNA MER1_type -67 122 4 5 1330 189 0 0 0 chr6 97771199 97771220 -51745817 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 5 1330 845 268 65 22 chr6 97771307 97771585 -51745452 + B4 SINE B4 1 290 -2 5 1330 509 250 9 0 chr6 97772571 97772683 -51744354 + PB1D10 SINE Alu 4 116 -1 5 1330 366 23 0 0 chr6 97773095 97773138 -51743899 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1330 251 98 39 0 chr6 97773287 97773338 -51743699 + (TTTTTG)n Simple_repeat Simple_repeat 3 55 0 5 1330 430 73 49 0 chr6 97774053 97774135 -51742902 + (TCTG)n Simple_repeat Simple_repeat 3 88 0 5 1330 570 278 6 32 chr6 97774244 97774327 -51742710 + ID SINE ID 4 82 -142 5 1330 250 289 55 70 chr6 97774327 97774457 -51742580 + PB1D10 SINE Alu 1 132 -16 5 1330 629 338 94 24 chr6 97774947 97775244 -51741793 + MER82 DNA MER2_type 335 652 -1 5 1330 509 0 16 0 chr6 97775837 97775898 -51741139 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1330 207 0 0 0 chr6 97778491 97778514 -51738523 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1330 393 22 0 0 chr6 97778790 97778836 -51738201 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1331 1542 129 5 0 chr6 97781776 97782000 -51735037 - URR1A DNA MER1_type 0 226 2 5 1331 190 345 34 11 chr6 97782213 97782301 -51734736 - L2b LINE L2 -49 3326 3237 5 1331 223 292 270 58 chr6 97783090 97783279 -51733758 + MIR SINE MIR 6 234 -28 5 1331 321 26 0 0 chr6 97783433 97783471 -51733566 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1331 406 276 138 0 chr6 97783472 97783588 -51733449 - B1F1 SINE Alu -17 132 1 5 1331 243 213 167 0 chr6 97783698 97783806 -51733231 - MER53 DNA hAT -64 129 4 5 1331 414 57 0 0 chr6 97783851 97783904 -51733133 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1331 198 0 0 0 chr6 97786475 97786497 -51730540 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1331 300 70 0 0 chr6 97786561 97786604 -51730433 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1331 429 20 0 0 chr6 97786604 97786653 -51730384 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1331 223 350 86 0 chr6 97786671 97786811 -51730226 - L2a LINE L2 -227 3199 3048 5 1331 453 267 8 8 chr6 97787097 97787214 -51729823 + RSINE1 SINE B4 2 118 -47 5 1331 262 340 19 0 chr6 97788843 97788949 -51728088 + L2a LINE L2 3315 3422 -4 5 1331 260 280 69 46 chr6 97789833 97789964 -51727073 + MIRc SINE MIR 88 221 -47 5 1331 285 29 0 0 chr6 97789985 97790019 -51727018 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1331 232 327 90 24 chr6 97790075 97790241 -51726796 + MIR SINE MIR 65 241 -21 5 1331 1072 254 85 10 chr6 97790476 97790782 -51726255 - MTEa LTR MaLR -50 329 1 5 1331 1200 68 0 0 chr6 97791394 97791541 -51725496 - B1_Mus2 SINE Alu 0 147 1 5 1331 747 0 0 0 chr6 97791576 97791659 -51725378 + (GAGAA)n Simple_repeat Simple_repeat 2 84 0 5 1331 989 190 71 5 chr6 97791714 97791926 -51725111 + URR1A DNA MER1_type 1 226 0 5 1331 1077 192 9 37 chr6 97792119 97792335 -51724702 + B3 SINE B2 2 211 -5 5 1331 22 35 0 0 chr6 97793882 97793911 -51723126 + AT_rich Low_complexity Low_complexity 1 29 0 5 1331 323 239 68 116 chr6 97794544 97794576 -51722461 + MT2B LTR ERVL 124 148 -453 5 1331 632 171 0 49 chr6 97794576 97794699 -51722338 + B1_Mur1 SINE Alu 1 117 -32 5 1331 2211 161 26 21 chr6 97794700 97794802 -51722235 - MTC LTR MaLR 0 421 324 5 1331 873 133 163 74 chr6 97794802 97795005 -51722032 - URR1A DNA MER1_type -3 223 3 5 1331 2211 161 26 21 chr6 97795005 97795321 -51721716 - MTC LTR MaLR -98 323 1 5 1331 369 280 218 11 chr6 97796038 97796226 -51720811 - MIRb SINE MIR -9 259 33 5 1331 294 248 9 65 chr6 97796815 97796923 -51720114 + (TATATG)n Simple_repeat Simple_repeat 4 105 0 5 1331 636 191 0 29 chr6 97797050 97797190 -51719847 - ID_B1 SINE B4 -6 218 83 5 1331 316 208 14 0 chr6 97798520 97798592 -51718445 - MIRb SINE MIR -8 260 188 5 1331 716 235 13 13 chr6 97798760 97798911 -51718126 + RSINE1 SINE B4 4 154 -11 5 1331 442 282 122 51 chr6 97799198 97799452 -51717585 + B4 SINE B4 3 274 -18 5 1331 854 159 20 7 chr6 97799848 97799994 -51717043 - B1_Mur4 SINE Alu -1 149 2 5 1331 2169 75 39 3 chr6 97800302 97800610 -51716427 - ORR1A2 LTR MaLR -8 319 1 5 1331 511 155 62 101 chr6 97800966 97801064 -51715973 + RMER17C LTR ERVK 76 185 -225 5 1331 1164 114 0 0 chr6 97801064 97801240 -51715797 + (TCC)n Simple_repeat Simple_repeat 3 178 0 5 1331 511 155 62 101 chr6 97801240 97801349 -51715688 + RMER17C LTR ERVK 186 275 -135 5 1331 205 208 19 19 chr6 97801712 97801766 -51715271 + GA-rich Low_complexity Low_complexity 6 59 0 5 1331 216 0 0 0 chr6 97801775 97801799 -51715238 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1331 441 0 0 0 chr6 97801799 97801847 -51715190 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1331 207 340 103 0 chr6 97802741 97802838 -51714199 - MIRc SINE MIR -114 154 48 5 1331 577 250 13 45 chr6 97802882 97803037 -51714000 - RSINE1 SINE B4 0 165 16 5 1331 548 279 131 18 chr6 97803294 97803568 -51713469 + L1MB2 LINE L1 4675 4979 -1161 5 1331 373 331 77 27 chr6 97803813 97803996 -51713041 + B4A SINE B4 90 281 -11 5 1331 207 139 0 0 chr6 97804004 97804040 -51712997 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1331 1545 262 106 25 chr6 97804080 97804675 -51712362 + L1MB2 LINE L1 5282 5924 -247 5 1331 650 283 117 16 chr6 97804817 97805065 -51711972 + B4A SINE B4 8 280 -12 5 1331 21 0 0 0 chr6 97805725 97805746 -51711291 + GC_rich Low_complexity Low_complexity 1 21 0 5 1331 1055 125 93 5 chr6 97806424 97806617 -51710420 + URR1A DNA MER1_type 1 210 -16 5 1331 1225 231 78 24 chr6 97806583 97806915 -51710122 + ORR1D2 LTR MaLR 14 363 -7 5 1331 310 321 19 19 chr6 97807040 97807148 -51709889 + B4A SINE B4 171 278 -14 5 1331 405 0 0 0 chr6 97807213 97807258 -51709779 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1331 234 0 0 0 chr6 97807258 97807283 -51709754 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1331 342 322 0 0 chr6 97808218 97808305 -51708732 - Lx9 LINE L1 -469 7175 7089 5 1331 317 236 0 80 chr6 97808303 97808441 -51708596 + Lx9 LINE L1 7391 7517 -127 5 1331 230 326 29 29 chr6 97808518 97808657 -51708380 - L1M5 LINE L1 -279 5845 5707 5 1331 234 116 0 0 chr6 97810390 97810433 -51706604 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 1331 766 194 0 0 chr6 97810435 97810569 -51706468 - B1_Mus2 SINE Alu -5 142 9 5 1331 1242 154 38 5 chr6 97811101 97811310 -51705727 - B3 SINE B2 0 216 1 5 1331 189 0 0 0 chr6 97811538 97811559 -51705478 + (CTG)n Simple_repeat Simple_repeat 1 21 0 5 1331 316 275 0 0 chr6 97812506 97812586 -51704451 - ID4 SINE ID -2 81 2 5 1331 199 308 95 9 chr6 97813041 97813146 -51703891 + MIRb SINE MIR 118 231 -37 5 1331 209 176 0 50 chr6 97813239 97813299 -51703738 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1331 522 0 0 0 chr6 97813321 97813379 -51703658 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1331 336 305 31 59 chr6 97813402 97813616 -51703421 + MIRb SINE MIR 46 258 -10 5 1331 578 49 0 24 chr6 97813695 97813778 -51703259 - B1_Mm SINE Alu 0 147 67 5 1331 210 154 0 0 chr6 97813990 97814029 -51703008 + T-rich Low_complexity Low_complexity 6 44 0 5 1331 366 176 166 57 chr6 97814919 97815076 -51701961 + RMER17C LTR ERVK 109 282 -128 5 1331 491 343 17 0 chr6 97816192 97816370 -51700667 + MER20 DNA MER1_type 39 219 0 5 1331 24 53 0 0 chr6 97819013 97819051 -51697986 + AT_rich Low_complexity Low_complexity 1 38 0 5 1331 499 144 18 0 chr6 97819054 97819165 -51697872 + (TG)n Simple_repeat Simple_repeat 2 114 0 5 1331 555 229 135 37 chr6 97819165 97819328 -51697709 - B3A SINE B2 -15 183 5 5 1331 214 255 20 0 chr6 97819405 97819456 -51697581 - ID4_ SINE ID -10 73 22 5 1331 432 0 0 0 chr6 97820319 97820367 -51696670 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1331 630 110 0 0 chr6 97820402 97820493 -51696544 - B3 SINE B2 -123 93 3 5 1331 2529 233 68 63 chr6 97820542 97820721 -51696316 - RCHARR1 DNA MER1_type -56 918 726 5 1331 1232 91 85 0 chr6 97820721 97820880 -51696157 + B2_Mm1t SINE B2 1 160 -33 5 1331 243 0 0 0 chr6 97820880 97820907 -51696130 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1331 1232 91 85 0 chr6 97820907 97820923 -51696114 + B2_Mm1t SINE B2 161 189 -4 5 1331 2529 233 68 63 chr6 97820923 97821650 -51695387 - RCHARR1 DNA MER1_type -249 725 7 5 1331 755 263 72 0 chr6 97822383 97822577 -51694460 + ID_B1 SINE B4 3 210 -14 6 1331 258 391 38 42 chr6 97823023 97823373 -51693664 - L2a LINE L2 -343 3083 2743 6 1331 392 83 0 32 chr6 97824816 97824878 -51692159 + B1_Mus1 SINE Alu 1 60 -88 6 1331 224 326 0 0 chr6 97824881 97824976 -51692061 + GA-rich Low_complexity Low_complexity 78 172 0 6 1331 750 77 0 0 chr6 97824978 97825082 -51691955 + B1_Mus2 SINE Alu 42 145 -2 6 1331 1071 125 0 0 chr6 97825082 97825250 -51691787 + (GAA)n Simple_repeat Simple_repeat 2 169 0 6 1331 438 20 0 0 chr6 97825250 97825301 -51691736 + (CAG)n Simple_repeat Simple_repeat 1 51 0 6 1331 404 289 0 0 chr6 97825825 97825915 -51691122 + PB1D10 SINE Alu 1 90 -27 6 1331 838 240 29 0 chr6 97826033 97826208 -51690829 + B3A SINE B2 1 180 -18 6 1331 215 170 0 21 chr6 97826250 97826298 -51690739 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 6 1331 549 296 38 6 chr6 97826398 97826558 -51690479 + B4A SINE B4 43 207 -85 6 1331 180 125 0 0 chr6 97829422 97829454 -51687583 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1331 243 176 20 0 chr6 97829758 97829809 -51687228 - MER77 LTR ERVL -261 346 295 6 1331 362 39 39 0 chr6 97830015 97830066 -51686971 + (AATAG)n Simple_repeat Simple_repeat 4 56 0 6 1331 339 278 39 34 chr6 97830112 97830317 -51686720 - L1MEc LINE L1 -5541 859 654 6 1331 623 232 101 11 chr6 97830501 97830680 -51686357 - B4 SINE B4 -69 223 29 6 1331 314 253 38 12 chr6 97831144 97831224 -51685813 + ID SINE ID 1 82 -142 6 1331 984 247 70 15 chr6 97831328 97831587 -51685450 + B4A SINE B4 2 274 -18 6 1331 298 259 140 0 chr6 97832327 97832470 -51684567 + MER33 DNA MER1_type 2 164 -160 6 1331 216 0 0 0 chr6 97832505 97832529 -51684508 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 6 1331 226 270 83 53 chr6 97832556 97832689 -51684348 + MER33 DNA MER1_type 183 319 -5 6 1331 443 187 22 26 chr6 97834087 97834363 -51682674 + (TA)n Simple_repeat Simple_repeat 1 274 0 6 1331 464 329 78 31 chr6 97835110 97835467 -51681570 - MLT1B LTR MaLR -16 374 1 6 1331 494 275 169 10 chr6 97836277 97836472 -51680565 + B4A SINE B4 1 226 -66 6 1331 372 344 111 58 chr6 97836659 97837345 -51679692 + LTR41 LTR ERVL 34 755 -13 6 1331 200 217 0 32 chr6 97838403 97838465 -51678572 + CT-rich Low_complexity Low_complexity 4 63 0 6 1331 198 0 0 0 chr6 97839585 97839607 -51677430 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1331 2698 233 92 20 chr6 97840573 97841435 -51675602 - RCHARR1 DNA MER1_type -48 926 3 6 1331 188 335 97 29 chr6 97842415 97842590 -51674447 + L2a LINE L2 3215 3401 -25 6 1331 739 170 316 0 chr6 97842703 97842874 -51674163 + URR1B DNA MER1_type 1 225 0 6 1331 184 321 13 13 chr6 97843102 97843181 -51673856 + MIRb SINE MIR 151 229 -39 6 1331 623 171 28 0 chr6 97843993 97844204 -51672833 + (TATG)n Simple_repeat Simple_repeat 1 216 0 6 1331 1176 92 0 0 chr6 97844240 97844468 -51672569 + (TATG)n Simple_repeat Simple_repeat 1 228 0 6 1331 275 325 58 0 chr6 97845258 97845378 -51671659 - MER53 DNA hAT -66 127 1 6 1331 240 184 0 0 chr6 97846265 97846314 -51670723 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1331 565 251 142 0 chr6 97846475 97846714 -51670323 + MER46C DNA MER2_type 10 282 -56 6 1331 309 109 0 0 chr6 97846760 97846815 -51670222 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1331 258 56 0 0 chr6 97847180 97847216 -51669821 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1331 399 41 0 0 chr6 97847798 97847847 -51669190 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 6 1331 815 274 13 35 chr6 97849404 97849631 -51667406 - ID_B1 SINE B4 -1 223 2 6 1331 261 0 0 0 chr6 97849904 97849933 -51667104 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1331 392 284 72 61 chr6 97850868 97851048 -51665989 - B3A SINE B2 -16 182 1 6 1331 22 0 0 0 chr6 97851133 97851155 -51665882 + AT_rich Low_complexity Low_complexity 1 22 0 6 1331 268 226 222 16 chr6 97851286 97851412 -51665625 - Tigger9b DNA MER2_type -295 329 178 6 1331 194 341 95 30 chr6 97851841 97852010 -51665027 + L4 LINE RTE 1266 1445 -584 6 1331 414 0 0 0 chr6 97853011 97853057 -51663980 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1331 224 172 0 17 chr6 97853082 97853141 -51663896 + CT-rich Low_complexity Low_complexity 3 60 0 6 1331 228 214 0 0 chr6 97853839 97853881 -51663156 - tRNA-Arg-CGY_ tRNA tRNA -33 43 2 6 1331 2191 121 15 6 chr6 97854809 97855143 -51661894 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1331 23167 63 34 14 chr6 97855143 97858153 -51658884 + IAPEz-int LTR ERVK 8 3076 -3405 6 1331 6692 57 12 18 chr6 97858139 97858994 -51658043 + IAPEz-int LTR ERVK 5630 6479 -2 6 1331 2191 121 15 6 chr6 97858996 97859330 -51657707 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1331 725 181 0 12 chr6 97859435 97859603 -51657434 + CT-rich Low_complexity Low_complexity 3 168 0 6 1331 186 192 0 0 chr6 97860537 97860589 -51656448 + (ATGGTG)n Simple_repeat Simple_repeat 1 52 0 6 1331 543 257 50 0 chr6 97862513 97862653 -51654384 + ID_B1 SINE B4 20 166 -58 6 1331 962 225 45 0 chr6 97863351 97863551 -51653486 - B3 SINE B2 -5 211 3 6 1331 510 17 0 0 chr6 97863710 97863769 -51653268 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1331 718 268 90 39 chr6 97863791 97864024 -51653013 - B4A SINE B4 -2 290 46 6 1331 1981 153 58 24 chr6 97864187 97864568 -51652469 + MTC LTR MaLR 28 421 0 6 1331 503 69 14 0 chr6 97865326 97865398 -51651639 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 6 1331 333 240 15 117 chr6 97865400 97865537 -51651500 - ID_B1 SINE B4 0 224 102 6 1331 469 246 25 0 chr6 97865416 97865538 -51651499 - B1F SINE Alu -5 144 20 6 1331 268 287 48 19 chr6 97866474 97866577 -51650460 - MER20 DNA MER1_type -52 167 62 6 1331 796 261 15 15 chr6 97867006 97867208 -51649829 - B3 SINE B2 -6 210 9 6 1331 359 292 59 86 chr6 97867391 97867578 -51649459 - B3A SINE B2 -16 182 1 6 1331 25 0 0 0 chr6 97867735 97867760 -51649277 + AT_rich Low_complexity Low_complexity 1 25 0 6 1331 433 289 50 29 chr6 97868960 97869099 -51647938 - RSINE1 SINE B4 -10 155 14 6 1331 22 0 0 0 chr6 97869109 97869131 -51647906 + AT_rich Low_complexity Low_complexity 1 22 0 6 1331 252 246 0 17 chr6 97869403 97869461 -51647576 - L2b LINE L2 -71 3304 3248 6 1331 628 332 9 5 chr6 97870974 97871189 -51645848 - B3 SINE B2 0 216 1 6 1331 396 0 0 0 chr6 97872609 97872653 -51644384 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1331 323 129 50 13 chr6 97872663 97872729 -51644308 - PB1D10 SINE Alu -43 74 21 6 1331 23 0 0 0 chr6 97873194 97873217 -51643820 + AT_rich Low_complexity Low_complexity 1 23 0 6 1331 197 240 0 20 chr6 97873890 97873941 -51643096 - L2c LINE L2 -15 3372 3323 6 1331 341 256 0 11 chr6 97874132 97874219 -51642818 + PB1D9 SINE Alu 23 108 -12 6 1331 308 24 0 24 chr6 97874219 97874261 -51642776 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 6 1331 1106 197 0 58 chr6 97874770 97874996 -51642041 - B3 SINE B2 -3 213 1 6 1331 659 335 6 0 chr6 97875847 97876029 -51641008 + B3A SINE B2 1 183 -15 6 1331 576 308 55 35 chr6 97876102 97876358 -51640679 - B4A SINE B4 -5 287 27 6 1331 220 329 14 14 chr6 97876435 97876506 -51640531 - RSINE1 SINE B4 -2 163 93 6 1331 240 364 0 137 chr6 97876538 97876678 -51640359 - ID_B1 SINE B4 -70 154 34 6 1331 760 191 7 34 chr6 97876678 97876824 -51640213 - B1_Mur1 SINE Alu -7 142 1 6 1331 240 364 0 137 chr6 97876824 97876858 -51640179 - ID SINE ID -191 33 4 6 1331 258 175 18 0 chr6 97878857 97878914 -51638123 - MIR SINE MIR -139 123 66 6 1331 546 54 0 0 chr6 97880347 97880421 -51636616 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1331 448 343 102 12 chr6 97881681 97881926 -51635111 + B4A SINE B4 2 268 -24 6 1331 259 313 47 21 chr6 97882145 97882293 -51634744 - MIRb SINE MIR -114 154 1 6 1331 300 91 0 0 chr6 97883576 97883620 -51633417 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1331 1133 82 0 7 chr6 97884440 97884453 -51632584 - B1_Mus1 SINE Alu 0 148 136 6 1331 216 0 0 0 chr6 97884453 97884477 -51632560 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 6 1331 1133 82 0 7 chr6 97884477 97884611 -51632426 - B1_Mus1 SINE Alu -13 135 2 6 1331 846 189 0 14 chr6 97884864 97885009 -51632028 - B1_Mus1 SINE Alu -5 143 1 6 1331 336 305 144 0 chr6 97885089 97885207 -51631830 + B3A SINE B2 11 145 -53 6 1331 1345 288 14 42 chr6 97885209 97885637 -51631400 - Lx7 LINE L1 -1012 6684 6269 6 1331 582 260 123 18 chr6 97885643 97885870 -51631167 + Lx7 LINE L1 5784 6034 -1662 6 1331 198 0 0 0 chr6 97886809 97886831 -51630206 + (TA)n Simple_repeat Simple_repeat 2 23 0 6 1331 1078 99 0 0 chr6 97886832 97886973 -51630064 - B1_Mus1 SINE Alu -6 142 2 6 1331 612 0 0 0 chr6 97887977 97888045 -51628992 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1331 24 67 0 0 chr6 97889250 97889295 -51627742 + AT_rich Low_complexity Low_complexity 1 45 0 6 1331 23 33 0 0 chr6 97889444 97889474 -51627563 + AT_rich Low_complexity Low_complexity 1 30 0 6 1331 342 0 0 0 chr6 97893512 97893550 -51623487 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1331 363 23 0 0 chr6 97894602 97894646 -51622391 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1331 491 311 62 80 chr6 97896980 97897256 -51619781 + B4A SINE B4 10 280 -12 6 1331 208 328 88 22 chr6 97897652 97897789 -51619248 - MIR SINE MIR -80 182 37 6 1331 789 198 0 13 chr6 97899295 97899454 -51617583 + B2_Mm2 SINE B2 5 161 -34 6 1331 750 272 157 2 chr6 97899634 97899897 -51617140 + B4A SINE B4 6 292 0 6 1331 21 0 0 0 chr6 97900264 97900285 -51616752 + AT_rich Low_complexity Low_complexity 1 21 0 6 1331 419 322 37 62 chr6 97901528 97901852 -51615185 - Charlie5 DNA MER1_type -71 2553 2238 7 1331 366 80 0 0 chr6 97902130 97902180 -51614857 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1331 535 269 59 7 chr6 97902494 97902629 -51614408 + B4 SINE B4 149 290 -2 6 1331 243 240 29 20 chr6 97903674 97903776 -51613261 + (TATG)n Simple_repeat Simple_repeat 4 106 0 7 1331 35 63 0 0 chr6 97903776 97903839 -51613198 + AT_rich Low_complexity Low_complexity 1 63 0 7 1331 434 18 0 18 chr6 97905191 97905247 -51611790 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1331 1049 272 28 25 chr6 97905282 97905565 -51611472 - B4 SINE B4 -8 284 1 7 1331 246 374 10 10 chr6 97905745 97905845 -51611192 - B4A SINE B4 -191 101 2 7 1331 42 0 0 0 chr6 97907241 97907283 -51609754 + AT_rich Low_complexity Low_complexity 1 42 0 7 1331 1340 105 11 0 chr6 97907302 97907492 -51609545 - B2_Mm1t SINE B2 -1 192 1 7 1331 373 18 71 0 chr6 97908662 97908718 -51608319 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 7 1331 1094 160 120 0 chr6 97910098 97910298 -51606739 + URR1A DNA MER1_type 3 226 0 7 1331 225 159 0 0 chr6 97910724 97910768 -51606269 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 7 1332 1100 198 19 9 chr6 97911633 97911847 -51605190 - B3 SINE B2 0 216 1 7 1332 405 86 0 0 chr6 97911974 97912032 -51605005 + (CTCA)n Simple_repeat Simple_repeat 3 60 0 7 1332 191 208 38 0 chr6 97912233 97912286 -51604751 + CT-rich Low_complexity Low_complexity 3 57 0 7 1332 216 0 0 0 chr6 97912917 97912941 -51604096 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1332 739 156 0 11 chr6 97912941 97913122 -51603915 + GA-rich Low_complexity Low_complexity 2 180 0 7 1332 208 222 0 0 chr6 97913122 97913158 -51603879 + polypurine Low_complexity Low_complexity 1 36 0 7 1332 458 206 184 0 chr6 97913161 97913297 -51603740 - B3 SINE B2 -54 162 2 7 1332 385 291 36 73 chr6 97913540 97913677 -51603360 - ID_B1 SINE B4 -9 215 84 7 1332 243 0 0 0 chr6 97914488 97914515 -51602522 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 7 1332 252 0 0 0 chr6 97914517 97914545 -51602492 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1332 219 114 0 0 chr6 97915774 97915809 -51601228 + (CAAGA)n Simple_repeat Simple_repeat 2 36 0 7 1332 221 246 43 58 chr6 97915835 97915904 -51601133 + B4A SINE B4 27 94 -198 7 1332 35 41 0 0 chr6 97916674 97916723 -51600314 + AT_rich Low_complexity Low_complexity 1 49 0 7 1332 726 234 42 0 chr6 97916772 97916939 -51600098 - B3A SINE B2 -16 182 9 7 1332 241 270 97 91 chr6 97917278 97917566 -51599471 - ORR1D2 LTR MaLR -15 364 40 7 1332 216 97 0 0 chr6 97917755 97917786 -51599251 + (CAGG)n Simple_repeat Simple_repeat 1 31 0 7 1332 418 275 124 14 chr6 97918119 97918329 -51598708 - L1ME1 LINE L1 -318 5861 5629 7 1332 8652 30 6 0 chr6 97918544 97919792 -51597245 - L1Md_F2 LINE L1 0 6582 5328 7 1332 256 279 23 11 chr6 97919799 97919886 -51597151 - L1ME1 LINE L1 -772 5392 5305 7 1332 308 358 97 6 chr6 97919941 97920261 -51596776 - L1ME1 LINE L1 -947 5199 4851 7 1332 817 299 61 4 chr6 97920480 97920742 -51596295 + B4A SINE B4 4 280 -12 7 1332 450 0 0 0 chr6 97920749 97920799 -51596238 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1332 335 167 0 0 chr6 97920921 97920975 -51596062 + PB1D9 SINE Alu 1 54 -66 7 1332 309 232 0 0 chr6 97920980 97921049 -51595988 + (CAGG)n Simple_repeat Simple_repeat 2 70 0 7 1332 406 188 135 0 chr6 97921049 97921145 -51595892 + B1_Mur1 SINE Alu 40 148 -1 7 1332 240 59 0 0 chr6 97921162 97921196 -51595841 + (CAAAC)n Simple_repeat Simple_repeat 4 37 0 7 1332 538 318 84 36 chr6 97921824 97922098 -51594939 + B4A SINE B4 2 288 -4 7 1332 444 37 0 0 chr6 97922769 97922823 -51594214 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1332 1155 68 0 0 chr6 97923617 97923765 -51593272 + B1_Mus1 SINE Alu 1 148 0 7 1332 691 299 89 11 chr6 97923987 97924258 -51592779 - B4A SINE B4 0 292 1 7 1332 611 219 0 8 chr6 97924393 97924517 -51592520 - RSINE1 SINE B4 -40 125 3 7 1332 288 274 9 113 chr6 97926747 97926862 -51590175 - MLT1N2 LTR MaLR -344 218 116 7 1332 778 330 89 17 chr6 97927052 97927515 -51589522 - Lx8 LINE L1 -1 7472 6977 7 1332 464 235 100 48 chr6 97927528 97927738 -51589299 - Lx8 LINE L1 -557 6916 6696 7 1332 467 290 0 0 chr6 97927742 97927866 -51589171 - B4A SINE B4 -26 266 143 7 1332 756 53 26 0 chr6 97927993 97928107 -51588930 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 7 1332 247 104 20 20 chr6 97928131 97928180 -51588857 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1332 495 0 0 0 chr6 97928336 97928391 -51588646 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 1332 574 280 28 46 chr6 97928561 97928778 -51588259 - MER20 DNA MER1_type -6 213 1 7 1332 253 202 12 37 chr6 97928951 97929033 -51588004 + CT-rich Low_complexity Low_complexity 3 82 0 7 1332 336 138 0 0 chr6 97929039 97929104 -51587933 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1332 231 36 0 0 chr6 97929228 97929256 -51587781 + (TTG)n Simple_repeat Simple_repeat 2 29 0 7 1332 691 170 28 7 chr6 97929881 97930023 -51587014 - B1_Mur4 SINE Alu 0 150 6 7 1332 501 345 105 51 chr6 97930197 97930308 -51586729 - Lx9 LINE L1 -9 7464 7307 7 1332 222 118 0 0 chr6 97930308 97930342 -51586695 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1332 719 340 29 76 chr6 97930342 97930843 -51586194 - Lx9 LINE L1 -270 7374 6841 7 1332 271 276 50 10 chr6 97931036 97931135 -51585902 + MIR SINE MIR 119 221 -41 7 1332 354 74 0 0 chr6 97931161 97931215 -51585822 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 7 1332 672 136 9 0 chr6 97931215 97931325 -51585712 - B1_Mur4 SINE Alu -8 142 32 7 1332 233 415 0 0 chr6 97932400 97932535 -51584502 + (TG)n Simple_repeat Simple_repeat 2 136 0 7 1332 1189 68 0 7 chr6 97932590 97932737 -51584300 + B1_Mus2 SINE Alu 2 147 0 7 1332 189 0 0 0 chr6 97932737 97932758 -51584279 + (CAAAAA)n Simple_repeat Simple_repeat 6 26 0 7 1332 449 292 26 63 chr6 97932856 97933046 -51583991 + MER20 DNA MER1_type 4 186 -33 7 1332 537 88 0 0 chr6 97933316 97933396 -51583641 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 1332 505 266 39 13 chr6 97933639 97933795 -51583242 - ORR1E LTR MaLR -190 169 10 7 1332 269 373 98 0 chr6 97933880 97934105 -51582932 - L2 LINE L2 -633 2786 2540 7 1332 277 276 138 76 chr6 97934125 97934270 -51582767 + ID_B1 SINE B4 69 222 -2 7 1332 366 316 0 73 chr6 97934148 97934271 -51582766 + PB1 SINE Alu 13 126 -1 7 1332 184 87 0 80 chr6 97934353 97934403 -51582634 + C-rich Low_complexity Low_complexity 6 51 0 7 1332 222 37 0 0 chr6 97934406 97934433 -51582604 + (CAG)n Simple_repeat Simple_repeat 1 27 0 7 1332 264 200 215 51 chr6 97935970 97936128 -51580909 - Lx8 LINE L1 -15 7458 7275 7 1332 25 31 0 0 chr6 97936478 97936510 -51580527 + AT_rich Low_complexity Low_complexity 1 32 0 7 1332 826 216 136 5 chr6 97936527 97936718 -51580319 - B3 SINE B2 0 216 1 7 1332 183 80 0 0 chr6 97937300 97937325 -51579712 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1332 375 259 145 35 chr6 97937711 97937883 -51579154 - MER58B DNA MER1_type -81 260 70 7 1332 285 29 0 0 chr6 97939152 97939186 -51577851 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1332 239 321 33 136 chr6 97939753 97939995 -51577042 + MER102c DNA MER1_type 79 295 -36 7 1332 525 230 84 47 chr6 97940063 97940337 -51576700 - B4A SINE B4 -8 284 1 7 1332 315 105 0 0 chr6 97941106 97941163 -51575874 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 7 1332 528 16 0 0 chr6 97941164 97941225 -51575812 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1332 191 226 10 0 chr6 97942552 97942654 -51574383 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 1332 290 26 26 0 chr6 97942938 97942977 -51574060 + (TTA)n Simple_repeat Simple_repeat 1 40 0 7 1332 318 26 0 0 chr6 97946725 97946764 -51570273 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1332 247 247 0 61 chr6 97947099 97947181 -51569856 - ID SINE ID -147 77 1 7 1332 623 314 46 32 chr6 97948308 97948588 -51568449 - B4A SINE B4 -8 284 1 7 1332 203 283 0 0 chr6 97949424 97949477 -51567560 - MIRm SINE MIR -4 272 220 7 1332 219 189 94 0 chr6 97949736 97949789 -51567248 + ID4 SINE ID 1 58 -25 7 1332 249 33 0 0 chr6 97950125 97950155 -51566882 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1332 292 254 0 0 chr6 97950161 97950232 -51566805 - ID4 SINE ID -11 72 2 7 1332 245 200 40 0 chr6 97950246 97950296 -51566741 + MIRc SINE MIR 95 146 -122 7 1332 225 0 0 0 chr6 97950437 97950462 -51566575 + (CCA)n Simple_repeat Simple_repeat 3 27 0 7 1332 353 280 23 31 chr6 97951066 97951195 -51565842 + CT-rich Low_complexity Low_complexity 3 130 0 7 1332 491 217 37 9 chr6 97951245 97951352 -51565685 - PB1D10 SINE Alu -7 110 1 7 1332 469 296 202 30 chr6 97952050 97952283 -51564754 - B4A SINE B4 -12 280 8 7 1332 351 0 0 0 chr6 97952332 97952371 -51564666 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 7 1332 217 214 0 0 chr6 97952403 97952445 -51564592 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1332 446 278 137 14 chr6 97952448 97952594 -51564443 - RSINE1 SINE B4 0 165 2 7 1332 207 0 0 0 chr6 97953809 97953832 -51563205 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1332 315 0 0 0 chr6 97954925 97954960 -51562077 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1332 237 94 18 54 chr6 97955470 97955526 -51561511 + A-rich Low_complexity Low_complexity 2 55 0 7 1332 523 207 18 146 chr6 97955676 97955830 -51561207 + B3 SINE B2 50 191 -25 7 1332 299 262 19 0 chr6 97956349 97956452 -51560585 + (TA)n Simple_repeat Simple_repeat 2 106 0 7 1332 446 224 16 0 chr6 97956476 97956601 -51560436 + (TATG)n Simple_repeat Simple_repeat 3 129 0 8 1332 204 143 24 0 chr6 97956601 97956643 -51560394 + GA-rich Low_complexity Low_complexity 1 43 0 8 1332 378 0 0 0 chr6 97956705 97956747 -51560290 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1332 197 268 85 0 chr6 97958146 97958228 -51558809 - L2a LINE L2 -288 3138 3050 8 1332 213 196 36 0 chr6 97958878 97958934 -51558103 + (TA)n Simple_repeat Simple_repeat 1 58 0 8 1332 319 225 25 12 chr6 97959400 97959481 -51557556 + MER33 DNA MER1_type 2 83 -241 8 1332 263 288 0 0 chr6 97959497 97959556 -51557481 + ID SINE ID 25 83 -141 8 1332 565 278 51 17 chr6 97959556 97959790 -51557247 + MER33 DNA MER1_type 74 315 -9 8 1332 364 246 39 23 chr6 97959808 97959937 -51557100 + MER58B DNA MER1_type 49 179 -162 8 1332 1247 240 85 8 chr6 97962536 97962902 -51554135 - MTD LTR MaLR 0 419 26 8 1332 188 224 41 0 chr6 97963157 97963206 -51553831 - MIR SINE MIR -120 142 92 8 1332 382 342 116 27 chr6 97963905 97964311 -51552726 - MER82 DNA MER2_type -7 646 205 8 1332 21 0 0 0 chr6 97964665 97964686 -51552351 + AT_rich Low_complexity Low_complexity 1 21 0 8 1332 334 345 0 14 chr6 97965670 97965811 -51551226 - MLT1B LTR MaLR 0 390 252 8 1332 314 323 357 13 chr6 97966050 97966350 -51550687 - MER119 DNA MER1_type -8 575 172 8 1332 863 280 53 70 chr6 97966797 97967285 -51549752 - L1MA4 LINE L1 -370 5930 5451 8 1332 280 294 27 27 chr6 97967486 97967633 -51549404 - L1MC1 LINE L1 -5 6328 6182 8 1332 279 173 0 0 chr6 97968604 97968656 -51548381 + GA-rich Low_complexity Low_complexity 3 54 0 8 1332 210 71 0 0 chr6 97969033 97969061 -51547976 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1332 369 0 0 0 chr6 97972336 97972377 -51544660 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1332 243 0 0 0 chr6 97972438 97972465 -51544572 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 8 1332 456 329 40 45 chr6 97972465 97972679 -51544358 - ID_B1 SINE B4 -7 217 3 8 1332 1930 221 31 40 chr6 97973386 97973830 -51543207 + Lx6 LINE L1 7021 7460 0 8 1332 458 250 15 15 chr6 97974984 97975114 -51541923 + MER103 DNA DNA 16 145 -21 8 1332 336 24 0 0 chr6 97975139 97975180 -51541857 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 8 1332 180 0 0 0 chr6 97975509 97975529 -51541508 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1332 627 200 29 22 chr6 97975858 97975996 -51541041 + B1_Mur2 SINE Alu 10 148 -1 8 1332 1467 210 105 30 chr6 97976195 97976568 -51540469 - MTD LTR MaLR 0 419 19 8 1332 225 0 0 0 chr6 97976568 97976593 -51540444 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 8 1332 183 156 0 0 chr6 97977220 97977252 -51539785 + (CAGAGA)n Simple_repeat Simple_repeat 6 37 0 8 1332 318 200 75 96 chr6 97977742 97977836 -51539201 + MTEa LTR MaLR 1 92 -287 8 1332 342 0 0 0 chr6 97978621 97978659 -51538378 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1332 285 29 0 0 chr6 97978659 97978692 -51538345 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1332 678 322 8 29 chr6 97978727 97978973 -51538064 - B4A SINE B4 -4 288 48 8 1332 465 259 26 26 chr6 97979482 97979597 -51537440 + RSINE1 SINE B4 3 117 -48 8 1332 447 19 0 0 chr6 97979621 97979673 -51537364 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1332 267 295 97 112 chr6 97979781 97980048 -51536989 - ORR1E LTR MaLR 0 359 97 8 1332 243 0 0 0 chr6 97980269 97980296 -51536741 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1332 702 52 10 0 chr6 97980300 97980396 -51536641 - B1_Mus2 SINE Alu 0 147 51 8 1332 442 302 117 24 chr6 97980399 97980647 -51536390 - MER58D DNA MER1_type -104 282 12 8 1332 311 294 176 0 chr6 97983222 97983341 -51533696 - B1F SINE Alu -9 140 1 8 1332 387 0 0 0 chr6 97983341 97983384 -51533653 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1332 250 259 18 16 chr6 97983385 97983449 -51533588 - ID4 SINE ID -10 73 10 8 1332 251 310 171 55 chr6 97983572 97983821 -51533216 - MER74B LTR ERVL -138 484 138 8 1332 250 315 39 0 chr6 97984082 97984209 -51532828 + L1MB5 LINE L1 6043 6174 0 8 1332 332 290 88 8 chr6 97984375 97984447 -51532590 + B4A SINE B4 2 82 -210 8 1332 216 86 0 0 chr6 97984447 97984482 -51532555 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1332 332 290 88 8 chr6 97984482 97984534 -51532503 + B4A SINE B4 83 135 -157 8 1332 616 281 101 43 chr6 97985542 97985799 -51531238 + B4 SINE B4 3 274 -18 8 1332 3140 56 5 5 chr6 97985813 97986209 -51530828 - MTA_Mm LTR MaLR 0 396 1 8 1332 821 309 60 17 chr6 97986296 97986645 -51530392 + Lx7 LINE L1 6036 6399 -1297 8 1332 244 305 35 47 chr6 97986645 97986731 -51530306 + MT2B LTR ERVL 173 257 -344 8 1332 640 219 8 8 chr6 97986655 97986775 -51530262 + B1_Mur4 SINE Alu 29 148 -2 8 1332 1308 243 103 9 chr6 97986792 97987237 -51529800 - RCHARR1 DNA MER1_type -352 622 136 8 1332 2617 50 3 3 chr6 97987549 97987870 -51529167 + L1_Mus1 LINE L1 6247 6567 0 8 1332 25 65 0 0 chr6 97988029 97988075 -51528962 + AT_rich Low_complexity Low_complexity 1 46 0 8 1332 391 311 16 135 chr6 97989396 97989641 -51527396 - B4A SINE B4 -76 216 1 8 1332 8568 30 1 0 chr6 97989653 97990803 -51526234 - L1Md_T LINE L1 0 6582 5432 8 1332 259 295 10 50 chr6 97990923 97991023 -51526014 + MLT1J LTR MaLR 43 138 -374 8 1332 21 57 0 0 chr6 97991586 97991621 -51525416 + AT_rich Low_complexity Low_complexity 1 35 0 8 1332 235 339 18 0 chr6 97992709 97992818 -51524219 - L2a LINE L2 -3 3423 3313 8 1332 362 326 18 127 chr6 97993568 97993733 -51523304 + B4 SINE B4 2 148 -76 8 1332 638 212 0 32 chr6 97993854 97994039 -51522998 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1332 221 288 15 15 chr6 97995479 97995546 -51521491 + GA-rich Low_complexity Low_complexity 2 68 0 8 1332 489 236 81 81 chr6 97996345 97996543 -51520494 + B3A SINE B2 1 198 0 8 1332 306 67 0 0 chr6 97998221 97998266 -51518771 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 8 1332 348 24 0 0 chr6 97998268 97998309 -51518728 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1332 612 240 93 44 chr6 97999697 97999880 -51517157 + ID_B1 SINE B4 2 193 -31 8 1332 382 167 0 23 chr6 97999913 97999999 -51517038 + GA-rich Low_complexity Low_complexity 2 85 0 8 1332 468 0 0 0 chr6 98000000 98000052 -51516985 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1332 514 265 144 47 chr6 98001180 98001437 -51515600 - B4 SINE B4 -10 282 1 2 1332 269 0 56 0 chr6 98001565 98001601 -51515436 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 3 1332 1173 30 0 0 chr6 98001602 98001737 -51515300 - B1_Mm SINE Alu -12 135 1 4 1332 845 154 6 0 chr6 98001806 98001968 -51515069 + (TCTA)n Simple_repeat Simple_repeat 2 164 0 5 1332 654 175 22 60 chr6 98001969 98002103 -51514934 - B1_Mur3 SINE Alu -10 139 11 6 1332 848 19 0 0 chr6 98002102 98002210 -51514827 + B1_Mm SINE Alu 39 146 -1 7 1332 359 208 50 109 chr6 98002103 98002222 -51514815 + B4 SINE B4 125 236 -56 8 1332 513 32 0 0 chr6 98002245 98002308 -51514729 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 1332 306 326 123 24 chr6 98002319 98002570 -51514467 - L1MEg LINE L1 -3460 2686 2411 1 1332 435 83 0 0 chr6 98002857 98002917 -51514120 + (TTA)n Simple_repeat Simple_repeat 2 61 0 1 1332 797 240 26 13 chr6 98003133 98003365 -51513672 - L1MEg LINE L1 -4453 1789 1555 1 1332 866 328 145 22 chr6 98004051 98004730 -51512307 + MER54B LTR ERVL 28 789 -4 1 1332 738 267 24 14 chr6 98004835 98005048 -51511989 + B3 SINE B2 2 216 0 1 1332 23 33 0 0 chr6 98005097 98005127 -51511910 + AT_rich Low_complexity Low_complexity 1 30 0 1 1332 562 241 0 15 chr6 98005127 98005262 -51511775 - Lx7 LINE L1 -1717 5979 5847 1 1332 1298 281 107 15 chr6 98006114 98006646 -51510391 - Lx9 LINE L1 -7 7637 7057 1 1332 272 281 22 22 chr6 98007896 98007987 -51509050 - MTEb LTR MaLR -11 368 278 1 1332 281 113 0 61 chr6 98008269 98008343 -51508694 + B1_Mm SINE Alu 81 145 -4 1 1332 282 87 0 0 chr6 98008345 98008391 -51508646 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 1 1332 22 0 0 0 chr6 98009256 98009278 -51507759 + AT_rich Low_complexity Low_complexity 1 22 0 2 1332 956 270 42 18 chr6 98009296 98009579 -51507458 - B4A SINE B4 -1 291 2 2 1332 475 191 72 51 chr6 98010269 98010407 -51506630 + Charlie16a DNA MER1_type 64 204 -138 2 1332 578 287 118 61 chr6 98011670 98012023 -51505014 + MTEa LTR MaLR 3 375 -4 2 1332 321 26 0 0 chr6 98012028 98012066 -51504971 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1332 786 228 74 5 chr6 98012361 98012551 -51504486 + B4 SINE B4 21 223 -69 2 1332 483 63 0 0 chr6 98012808 98012871 -51504166 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1332 342 107 0 0 chr6 98012956 98013012 -51504025 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1332 447 118 0 0 chr6 98013116 98013192 -51503845 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 1332 26 0 0 0 chr6 98013535 98013561 -51503476 + AT_rich Low_complexity Low_complexity 1 26 0 2 1332 395 19 19 0 chr6 98013968 98014020 -51503017 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1332 633 250 60 18 chr6 98014194 98014361 -51502676 + B3A SINE B2 1 174 -24 3 1332 306 0 0 0 chr6 98014371 98014405 -51502632 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1332 189 0 0 0 chr6 98014578 98014599 -51502438 + (TTA)n Simple_repeat Simple_repeat 1 21 0 3 1332 259 297 71 39 chr6 98015457 98015611 -51501426 + Helitron2Na_Mam RC Helitron? 1 159 -165 3 1332 234 0 0 0 chr6 98015755 98015781 -51501256 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 3 1332 262 321 48 35 chr6 98016217 98016362 -51500675 - B1F SINE Alu -2 147 1 3 1332 606 95 0 0 chr6 98016902 98016997 -51500040 + (GA)n Simple_repeat Simple_repeat 2 96 0 3 1332 454 254 0 66 chr6 98017906 98018028 -51499009 - PB1D7 SINE Alu 0 120 7 3 1332 394 188 10 10 chr6 98019996 98020093 -51496944 + CT-rich Low_complexity Low_complexity 1 97 0 3 1332 459 342 15 54 chr6 98020595 98020799 -51496238 - B4 SINE B4 -3 289 94 4 1332 23 33 0 0 chr6 98020993 98021023 -51496014 + AT_rich Low_complexity Low_complexity 1 30 0 4 1332 279 0 0 0 chr6 98021936 98021967 -51495070 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 4 1332 1142 64 0 0 chr6 98021968 98022108 -51494929 - B1_Mus2 SINE Alu -6 141 2 4 1332 333 0 0 0 chr6 98022241 98022278 -51494759 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1332 306 73 0 0 chr6 98022278 98022318 -51494719 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1332 475 295 88 4 chr6 98022345 98022549 -51494488 - B4 SINE B4 -17 275 64 4 1332 3453 152 40 13 chr6 98022646 98023271 -51493766 - RLTR26 LTR ERVK 0 642 1 4 1332 1263 288 112 22 chr6 98023379 98024146 -51492891 + L1MB4 LINE L1 5328 6163 -17 4 1332 24 0 0 0 chr6 98024623 98024647 -51492390 + AT_rich Low_complexity Low_complexity 1 24 0 4 1332 1374 56 0 0 chr6 98025910 98026090 -51490947 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1332 322 214 28 56 chr6 98026103 98026281 -51490756 - RMER17C LTR ERVK -138 272 100 5 1332 392 224 40 0 chr6 98026364 98026516 -51490521 + C-rich Low_complexity Low_complexity 1 158 0 5 1332 253 344 7 44 chr6 98026522 98026659 -51490378 + CT-rich Low_complexity Low_complexity 4 135 0 5 1332 293 286 0 0 chr6 98026721 98026791 -51490246 - ID4 SINE ID 0 83 14 5 1332 258 32 0 0 chr6 98026852 98026883 -51490154 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1332 183 338 24 36 chr6 98027282 98027365 -51489672 + MIRb SINE MIR 8 89 -179 5 1332 183 264 53 40 chr6 98027596 98027671 -51489366 - MIRb SINE MIR -129 139 64 5 1332 799 284 9 85 chr6 98027752 98028068 -51488969 - B4 SINE B4 0 292 1 5 1332 1051 124 129 5 chr6 98029289 98029483 -51487554 - URR1A DNA MER1_type 0 226 9 5 1332 533 280 57 6 chr6 98032039 98032215 -51484822 + Lx9 LINE L1 7310 7494 -150 6 1332 216 97 0 0 chr6 98032588 98032619 -51484418 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1332 210 91 0 0 chr6 98033371 98033404 -51483633 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1332 201 74 0 0 chr6 98034127 98034154 -51482883 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1332 335 314 154 34 chr6 98034493 98034701 -51482336 - MLT1D LTR MaLR 0 505 273 6 1332 1348 147 0 0 chr6 98034675 98034893 -51482144 + URR1B DNA MER1_type 8 225 0 6 1332 540 295 129 18 chr6 98034895 98035181 -51481856 - MLT1E2 LTR MaLR -303 324 7 6 1332 483 182 10 10 chr6 98035443 98035543 -51481494 - MLT1A1 LTR MaLR -5 403 304 6 1332 838 252 28 28 chr6 98035672 98035888 -51481149 - B3 SINE B2 0 216 1 6 1332 281 133 0 0 chr6 98035896 98035941 -51481096 - B3 SINE B2 -171 45 1 6 1332 852 224 30 0 chr6 98036253 98036454 -51480583 - B3 SINE B2 -6 210 4 7 1332 1364 268 73 10 chr6 98036511 98036896 -51480141 - Lx6 LINE L1 -4 7456 7048 7 1332 1266 283 22 20 chr6 98036962 98037319 -51479718 - ORR1E LTR MaLR 0 359 2 7 1332 1122 224 125 35 chr6 98037373 98037716 -51479321 + ORR1D1 LTR MaLR 1 374 0 7 1332 273 266 108 15 chr6 98037754 98037884 -51479153 - MIR SINE MIR -99 163 22 7 1332 381 224 112 0 chr6 98038183 98038281 -51478756 - B1F2 SINE Alu -34 115 7 7 1332 956 237 0 66 chr6 98038333 98038515 -51478522 - B3 SINE B2 -5 211 41 7 1332 2325 37 0 0 chr6 98038515 98038786 -51478251 - L1Md_T LINE L1 0 6582 6312 7 1332 956 237 0 66 chr6 98038786 98038829 -51478208 - B3 SINE B2 -176 40 1 7 1332 423 0 0 0 chr6 98038888 98038935 -51478102 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1332 345 276 0 0 chr6 98039880 98040003 -51477034 + (CAT)n Simple_repeat Simple_repeat 2 124 0 7 1332 288 259 0 0 chr6 98040013 98040071 -51476966 - ID4 SINE ID -24 59 2 8 1333 405 0 0 0 chr6 98042193 98042238 -51474799 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1333 297 234 108 36 chr6 98042252 98042363 -51474674 - RSINE1 SINE B4 -36 129 11 8 1333 282 56 0 0 chr6 98042789 98042825 -51474212 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1333 260 317 22 99 chr6 98043696 98043969 -51473068 + L1MC5 LINE L1 7609 7860 -101 8 1333 184 333 40 0 chr6 98044904 98045003 -51472034 - L2a LINE L2 -2 3424 3322 8 1333 396 326 113 19 chr6 98045881 98045903 -51471134 - B4 SINE B4 -1 291 271 8 1333 345 62 0 0 chr6 98045903 98045951 -51471086 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1333 396 326 113 19 chr6 98045951 98046194 -51470843 - B4 SINE B4 -22 270 2 8 1333 187 362 37 12 chr6 98046778 98046859 -51470178 - MIRc SINE MIR -64 204 122 8 1333 515 285 113 63 chr6 98048278 98048596 -51468441 - MLT2B2 LTR ERVL -2 513 180 8 1333 446 278 9 0 chr6 98048704 98048754 -51468283 - ORR1E LTR MaLR -215 144 94 9 1333 1203 146 60 9 chr6 98048754 98048969 -51468068 + URR1A DNA MER1_type 1 226 0 9 1333 446 278 9 0 chr6 98048969 98049026 -51468011 - ORR1E LTR MaLR -266 93 37 9 1333 431 265 15 36 chr6 98049170 98049307 -51467730 - ID_B1 SINE B4 -39 185 52 9 1333 565 338 46 21 chr6 98050154 98050435 -51466602 - B4 SINE B4 -4 288 1 9 1333 378 294 159 27 chr6 98051200 98051501 -51465536 + MER102b DNA MER1_type 1 341 0 9 1333 219 152 0 0 chr6 98051532 98051578 -51465459 + GA-rich Low_complexity Low_complexity 1 46 0 9 1333 274 148 60 17 chr6 98051602 98051719 -51465318 + (CAGA)n Simple_repeat Simple_repeat 1 122 0 9 1333 315 71 0 0 chr6 98051723 98051765 -51465272 + (CACG)n Simple_repeat Simple_repeat 1 42 0 9 1333 186 43 0 0 chr6 98051772 98051795 -51465242 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 9 1333 442 304 75 32 chr6 98051844 98052031 -51465006 - B4 SINE B4 -87 205 11 9 1333 804 258 16 0 chr6 98052479 98052673 -51464364 + ID_B1 SINE B4 2 198 -26 1 1333 233 322 67 17 chr6 98052708 98052828 -51464209 + L2a LINE L2 3278 3403 -23 1 1333 225 0 0 0 chr6 98053488 98053513 -51463524 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1333 1546 192 149 132 chr6 98054045 98054567 -51462470 - MT2A LTR ERVL -2 531 1 1 1333 189 0 0 0 chr6 98055012 98055033 -51462004 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1333 189 171 0 0 chr6 98056153 98056188 -51460849 + T-rich Low_complexity Low_complexity 1 35 0 1 1333 547 342 75 22 chr6 98056637 98056864 -51460173 - B4 SINE B4 -11 281 43 1 1333 387 294 50 111 chr6 98057020 98057219 -51459818 + MER20 DNA MER1_type 27 213 -6 1 1333 452 322 47 14 chr6 98058846 98058994 -51458043 - RSINE1 SINE B4 -10 155 3 1 1333 194 91 0 64 chr6 98060545 98060592 -51456445 + T-rich Low_complexity Low_complexity 1 44 0 1 1333 267 215 137 21 chr6 98061207 98061302 -51455735 - MIR SINE MIR -116 146 41 1 1333 225 0 0 0 chr6 98061312 98061337 -51455700 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1333 269 217 94 24 chr6 98061653 98061738 -51455299 - L1MC4a LINE L1 -2 7880 7790 1 1333 212 0 0 35 chr6 98064040 98064069 -51452968 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 1 1333 333 248 50 66 chr6 98064868 98064989 -51452048 - L2b LINE L2 -18 3357 3239 1 1333 242 224 66 0 chr6 98065083 98065159 -51451878 + CT-rich Low_complexity Low_complexity 4 84 0 1 1333 449 159 9 26 chr6 98065349 98065380 -51451657 + polypyrimidine Low_complexity Low_complexity 85 116 0 1 1333 1222 82 11 6 chr6 98065380 98065561 -51451476 + (TTCC)n Simple_repeat Simple_repeat 1 185 -181 1 1333 1222 82 11 6 chr6 98065568 98065744 -51451293 + (TTCC)n Simple_repeat Simple_repeat 186 366 0 1 1333 449 159 9 26 chr6 98065744 98065820 -51451217 + polypyrimidine Low_complexity Low_complexity 4 78 0 1 1333 706 162 16 33 chr6 98066079 98066200 -51450837 - PB1D9 SINE Alu 0 120 2 1 1333 511 322 13 7 chr6 98069867 98070020 -51447017 - RSINE1 SINE B4 -2 163 10 1 1333 378 61 0 0 chr6 98070040 98070089 -51446948 + (TTTC)n Simple_repeat Simple_repeat 1 49 0 1 1333 228 325 95 101 chr6 98070360 98070528 -51446509 + LTR33B LTR ERVL 1 167 -336 1 1333 294 374 60 30 chr6 98070829 98070898 -51446139 + MER96 DNA hAT 1 69 -106 1 1333 809 278 19 0 chr6 98070898 98071103 -51445934 + B3 SINE B2 2 210 -6 1 1333 294 374 60 30 chr6 98071103 98071201 -51445836 + MER96 DNA hAT 70 173 -2 1 1333 279 236 271 15 chr6 98071291 98071429 -51445608 + MER58A DNA MER1_type 52 224 0 1 1333 383 268 20 10 chr6 98071504 98071602 -51445435 + MER63D DNA AcHobo 285 383 -678 1 1333 468 0 0 0 chr6 98071771 98071823 -51445214 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1333 321 294 102 86 chr6 98072795 98072981 -51444056 - MER44C DNA MER2_type -48 685 497 1 1333 227 400 0 0 chr6 98073075 98073140 -51443897 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 1 1333 569 269 318 29 chr6 98073136 98073526 -51443511 - MER44C DNA MER2_type -226 507 6 1 1333 413 36 18 0 chr6 98074835 98074890 -51442147 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1333 568 314 24 155 chr6 98074928 98075218 -51441819 - B4 SINE B4 -5 287 36 1 1333 385 271 73 16 chr6 98075285 98075425 -51441612 - MIRc SINE MIR -91 177 23 1 1333 829 128 5 27 chr6 98076264 98076448 -51440589 + CT-rich Low_complexity Low_complexity 1 180 0 1 1333 382 216 10 120 chr6 98076460 98076560 -51440477 - B1F1 SINE Alu -56 93 5 1 1333 336 360 66 0 chr6 98076505 98076641 -51440396 - B4A SINE B4 -147 145 1 1 1333 665 289 52 121 chr6 98078012 98078343 -51438694 - MTEa LTR MaLR -1 378 75 1 1333 306 0 0 0 chr6 98078343 98078377 -51438660 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1333 665 289 52 121 chr6 98078377 98078451 -51438586 - MTEa LTR MaLR -305 74 1 1 1333 247 310 51 101 chr6 98079278 98079436 -51437601 - MIR SINE MIR -70 192 43 1 1333 228 67 0 0 chr6 98079969 98079999 -51437038 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1333 1030 130 0 11 chr6 98079999 98080178 -51436859 + (GAA)n Simple_repeat Simple_repeat 3 179 0 1 1333 569 276 26 13 chr6 98080449 98080603 -51436434 - MLT1K LTR MaLR -73 522 367 1 1333 506 109 0 11 chr6 98081504 98081597 -51435440 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 1333 342 0 0 0 chr6 98081597 98081635 -51435402 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1333 893 327 21 14 chr6 98081662 98081941 -51435096 - B4A SINE B4 -10 282 2 1 1333 261 324 14 0 chr6 98081996 98082070 -51434967 - ID4_ SINE ID -7 76 2 1 1333 660 325 107 21 chr6 98084711 98084944 -51432093 + B4 SINE B4 3 255 -37 1 1333 423 0 0 0 chr6 98084970 98085017 -51432020 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1333 405 0 0 0 chr6 98086114 98086159 -51430878 + (ATGTG)n Simple_repeat Simple_repeat 1 45 0 1 1333 636 308 57 57 chr6 98086181 98086248 -51430789 - B4 SINE B4 0 292 226 1 1333 617 52 0 0 chr6 98086248 98086325 -51430712 + L1_Mus2 LINE L1 6490 6566 0 1 1333 636 308 57 57 chr6 98086325 98086467 -51430570 - B4 SINE B4 -67 225 83 1 1333 1461 254 77 65 chr6 98086486 98087008 -51430029 + MT2A LTR ERVL 1 528 -5 1 1333 238 255 0 0 chr6 98087112 98087163 -51429874 - MIRc SINE MIR -112 156 106 1 1333 187 290 57 14 chr6 98088466 98088536 -51428501 + MIRm SINE MIR 49 121 -155 1 1333 345 344 38 28 chr6 98088893 98089149 -51427888 - MLT1F2 LTR MaLR -106 521 267 1 1333 367 247 23 12 chr6 98089780 98089866 -51427171 - PB1D10 SINE Alu -19 98 12 1 1333 1308 79 0 0 chr6 98091099 98091277 -51425760 + (TTC)n Simple_repeat Simple_repeat 2 179 0 1 1333 344 77 19 0 chr6 98091279 98091331 -51425706 + (TTCTCC)n Simple_repeat Simple_repeat 3 55 0 1 1333 988 259 55 33 chr6 98091354 98091626 -51425411 + B4A SINE B4 5 282 -10 1 1333 963 169 0 0 chr6 98091871 98092048 -51424989 + CT-rich Low_complexity Low_complexity 1 177 0 1 1333 522 0 0 0 chr6 98092050 98092108 -51424929 + (TTTTC)n Simple_repeat Simple_repeat 5 62 0 1 1333 366 23 0 0 chr6 98092331 98092374 -51424663 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1333 301 344 0 127 chr6 98092381 98092531 -51424506 - RSINE1 SINE B4 -31 134 4 1 1333 48 53 0 0 chr6 98092726 98092802 -51424235 + AT_rich Low_complexity Low_complexity 1 76 0 1 1333 298 237 40 20 chr6 98095220 98095319 -51421718 - ORR1E LTR MaLR -251 108 8 1 1333 189 0 0 0 chr6 98095734 98095755 -51421282 + (TCC)n Simple_repeat Simple_repeat 2 22 0 1 1333 253 308 77 0 chr6 98096006 98096097 -51420940 - L3 LINE CR1 -90 4399 4302 1 1333 861 274 37 5 chr6 98096589 98096805 -51420232 - ID_B1 SINE B4 0 224 2 1 1333 315 247 29 49 chr6 98098827 98098929 -51418108 - MER5A1 DNA MER1_type -45 121 22 1 1333 199 318 0 0 chr6 98099459 98099503 -51417534 - L2c LINE L2 -230 3157 3114 1 1333 2126 155 34 26 chr6 98100447 98100825 -51416212 - ORR1B1 LTR MaLR -13 381 1 1 1333 249 264 91 36 chr6 98101199 98101309 -51415728 + L1MEf LINE L1 1390 1505 -4695 1 1333 186 209 0 0 chr6 98101736 98101779 -51415258 + (TATG)n Simple_repeat Simple_repeat 4 46 0 1 1333 1020 331 14 3 chr6 98101790 98102075 -51414962 - B4A SINE B4 -4 288 1 1 1333 362 287 36 72 chr6 98102934 98103073 -51413964 + MLT1A LTR MaLR 7 140 -234 1 1333 692 285 206 0 chr6 98103131 98103359 -51413678 + B4A SINE B4 4 278 -14 1 1333 273 29 0 0 chr6 98103413 98103447 -51413590 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1333 197 108 27 0 chr6 98104189 98104226 -51412811 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 1 1333 198 0 0 0 chr6 98104421 98104443 -51412594 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1333 21 0 0 0 chr6 98106310 98106331 -51410706 + AT_rich Low_complexity Low_complexity 1 21 0 1 1333 367 306 32 40 chr6 98107544 98107670 -51409367 + B1F2 SINE Alu 2 126 -23 1 1333 289 286 0 0 chr6 98107898 98107961 -51409076 - MIRc SINE MIR -114 154 92 1 1333 210 143 0 0 chr6 98108600 98108635 -51408402 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1333 27 0 0 0 chr6 98108760 98108787 -51408250 + AT_rich Low_complexity Low_complexity 1 27 0 1 1333 411 56 0 0 chr6 98109710 98109764 -51407273 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1333 7536 48 0 7 chr6 98109765 98110686 -51406351 - L1Md_F2 LINE L1 -14 6568 5654 1 1333 204 40 0 0 chr6 98110919 98110944 -51406093 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1333 26 30 0 0 chr6 98110954 98110987 -51406050 + AT_rich Low_complexity Low_complexity 1 33 0 1 1333 10472 22 1 0 chr6 98110987 98112946 -51404091 - L1Md_T LINE L1 0 6582 4623 1 1333 785 274 139 21 chr6 98113248 98113587 -51403450 - MTE2b LTR MaLR 0 379 1 1 1333 21 0 0 0 chr6 98113745 98113766 -51403271 + AT_rich Low_complexity Low_complexity 1 21 0 1 1333 330 200 17 0 chr6 98114793 98114853 -51402184 + ORR1D2 LTR MaLR 8 68 -302 1 1333 1065 256 46 35 chr6 98114959 98115206 -51401831 + ORR1D2 LTR MaLR 85 339 -31 1 1333 2195 118 12 58 chr6 98115206 98115549 -51401488 + ORR1A2 LTR MaLR 1 327 0 1 1333 1065 256 46 35 chr6 98115549 98115584 -51401453 + ORR1D2 LTR MaLR 340 370 0 1 1333 546 312 0 7 chr6 98115827 98115982 -51401055 - Lx8 LINE L1 -204 7269 7116 1 1333 668 295 26 129 chr6 98116094 98116268 -51400769 - B4A SINE B4 -47 245 96 1 1333 3287 122 18 0 chr6 98116268 98116762 -51400275 - Lx2 LINE L1 -2 6995 6493 1 1333 668 295 26 129 chr6 98116762 98116859 -51400178 - B4A SINE B4 -197 95 2 1 1333 340 192 10 10 chr6 98117351 98117451 -51399586 + (CCA)n Simple_repeat Simple_repeat 1 100 0 1 1333 1022 287 34 28 chr6 98118064 98118419 -51398618 + ORR1E LTR MaLR 1 357 -2 1 1333 697 215 0 51 chr6 98119344 98119501 -51397536 + B1_Mur4 SINE Alu 2 150 0 1 1333 327 104 0 0 chr6 98119628 98119676 -51397361 + (CCA)n Simple_repeat Simple_repeat 1 48 0 1 1333 858 329 130 24 chr6 98119910 98120449 -51396588 + MLT1G3-int LTR MaLR 894 1489 0 2 1333 885 339 78 16 chr6 98120449 98120821 -51396216 + MLT1G3 LTR MaLR 1 395 -200 2 1333 1519 247 16 8 chr6 98120859 98121235 -51395802 - MTE2b LTR MaLR 0 379 1 2 1333 25 31 0 0 chr6 98121427 98121459 -51395578 + AT_rich Low_complexity Low_complexity 1 32 0 2 1333 724 354 245 41 chr6 98122029 98122653 -51394384 + MER21B LTR ERV1 1 751 -112 2 1333 484 357 111 63 chr6 98124716 98125096 -51391941 + MLT1F LTR MaLR 28 425 -123 2 1333 240 338 15 0 chr6 98125166 98125234 -51391803 - B4 SINE B4 -221 71 3 2 1333 226 245 67 29 chr6 98125250 98125355 -51391682 - PB1D10 SINE Alu -8 109 1 2 1333 188 280 46 83 chr6 98125478 98125587 -51391450 + L3 LINE CR1 4048 4152 -337 2 1333 272 220 0 33 chr6 98126394 98126455 -51390582 + MLT1A1 LTR MaLR 319 377 -31 2 1333 281 338 51 13 chr6 98126586 98126742 -51390295 + MER58B DNA MER1_type 63 224 -117 2 1333 3352 249 86 65 chr6 98126763 98128353 -51388684 - Lx9 LINE L1 -629 7015 5418 2 1333 579 66 0 0 chr6 98128353 98128429 -51388608 + (TTTTG)n Simple_repeat Simple_repeat 2 77 0 2 1333 1730 220 167 19 chr6 98128429 98128608 -51388429 - Lx9 LINE L1 -430 5417 5170 2 1333 293 320 49 11 chr6 98128610 98128741 -51388296 - MLT1A LTR MaLR -234 131 1 2 1333 727 286 74 21 chr6 98128741 98128984 -51388053 - MLT1A-int LTR MaLR 0 1735 1480 2 1333 678 306 145 113 chr6 98129246 98129610 -51387427 - MLT1A-int LTR MaLR -908 827 513 2 1333 1065 231 119 74 chr6 98129610 98129947 -51387090 + ORR1E LTR MaLR 4 355 -4 2 1333 678 306 145 113 chr6 98129947 98130341 -51386696 - MLT1A-int LTR MaLR -1223 512 45 2 1333 854 276 64 8 chr6 98130356 98130622 -51386415 - MLT2B1 LTR ERVL -239 281 1 2 1333 429 145 0 0 chr6 98130814 98130890 -51386147 + (TCC)n Simple_repeat Simple_repeat 3 78 0 2 1333 319 267 54 115 chr6 98130919 98131067 -51385970 + MTEb LTR MaLR 240 378 -1 2 1333 287 246 179 25 chr6 98131737 98131846 -51385191 - B1_Mus1 SINE Alu -29 119 7 2 1333 453 19 0 0 chr6 98132048 98132102 -51384935 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1333 538 262 86 45 chr6 98132102 98132335 -51384702 - Lx8 LINE L1 -52 7421 7177 2 1333 5781 132 34 31 chr6 98132735 98133691 -51383346 - RMER17B LTR ERVK 0 958 1 2 1333 270 0 0 0 chr6 98133913 98133943 -51383094 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 1333 393 22 0 0 chr6 98133959 98134005 -51383032 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1333 6056 176 12 16 chr6 98134093 98135575 -51381462 - Lx2B LINE L1 -154 6846 5375 2 1333 11914 148 24 24 chr6 98135587 98137985 -51379052 + Lx2B LINE L1 3018 5375 -502 2 1333 204 24 98 0 chr6 98139066 98139107 -51377930 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 2 1333 463 261 175 65 chr6 98139371 98139552 -51377485 + L1MD LINE L1 3022 3226 -2920 2 1333 855 0 0 0 chr6 98139552 98139647 -51377390 + (TTC)n Simple_repeat Simple_repeat 2 96 0 2 1333 977 83 45 0 chr6 98139647 98139780 -51377257 - B1_Mus1 SINE Alu -9 139 1 2 1333 463 261 175 65 chr6 98139780 98139888 -51377149 + L1MD LINE L1 3227 3343 -2803 2 1333 756 214 82 69 chr6 98139976 98140207 -51376830 + ORR1D1 LTR MaLR 109 370 -4 2 1333 287 234 80 5 chr6 98140238 98140358 -51376679 + MER5A DNA MER1_type 1 134 -55 2 1333 747 260 94 0 chr6 98140415 98140447 -51376590 - B3 SINE B2 -1 215 179 2 1333 275 71 24 0 chr6 98140447 98140489 -51376548 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1333 747 260 94 0 chr6 98140489 98140648 -51376389 - B3 SINE B2 -38 178 7 2 1333 203 194 0 0 chr6 98140663 98140699 -51376338 + MER5A DNA MER1_type 145 180 -9 2 1333 528 324 6 0 chr6 98141349 98141519 -51375518 + MER121 Unknown Unknown 63 233 -179 2 1333 1303 297 31 3 chr6 98142504 98142862 -51374175 - MTE2b LTR MaLR -11 368 1 2 1333 195 290 181 11 chr6 98142928 98143022 -51374015 + MIRb SINE MIR 111 220 -48 2 1333 243 0 0 0 chr6 98144902 98144929 -51372108 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1333 242 295 57 0 chr6 98145078 98145183 -51371854 - L1MB3 LINE L1 -41 6142 6032 2 1333 291 136 0 0 chr6 98145657 98145716 -51371321 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1333 320 194 16 16 chr6 98145716 98145779 -51371258 - HAL1-3A_ME LINE L1 -827 2031 1969 2 1333 351 194 0 0 chr6 98145779 98145872 -51371165 + (TG)n Simple_repeat Simple_repeat 1 93 0 2 1333 281 287 88 44 chr6 98146015 98146128 -51370909 - B4A SINE B4 -173 119 2 2 1333 291 336 0 0 chr6 98146207 98146314 -51370723 - L1MA7 LINE L1 -337 5954 5848 2 1333 371 188 0 34 chr6 98146777 98146865 -51370172 + Lx5 LINE L1 6847 6931 -119 2 1333 634 260 67 6 chr6 98148605 98148783 -51368254 - B3A SINE B2 -7 191 3 2 1333 1132 119 0 0 chr6 98149836 98149995 -51367042 - B2_Mm2 SINE B2 -34 161 3 2 1333 2467 158 42 20 chr6 98150434 98150881 -51366156 - Lx2 LINE L1 0 6997 6541 2 1333 913 117 7 0 chr6 98151238 98151392 -51365645 - L1_Mur2 LINE L1 -737 5140 4986 2 1333 216 67 0 0 chr6 98151529 98151559 -51365478 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1333 396 0 0 0 chr6 98151561 98151605 -51365432 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1333 649 283 58 0 chr6 98151609 98151747 -51365290 - RSINE1 SINE B4 -17 148 3 2 1333 205 217 113 32 chr6 98151820 98151882 -51365155 - MIR SINE MIR -73 135 69 2 1333 5573 142 26 2 chr6 98152076 98153150 -51363887 + Lx5 LINE L1 4862 5962 -1088 2 1333 2241 97 75 28 chr6 98153165 98153526 -51363511 - Lx LINE L1 -12 6642 6265 2 1333 186 43 0 0 chr6 98153527 98153550 -51363487 + (G)n Simple_repeat Simple_repeat 1 23 0 2 1333 427 364 98 21 chr6 98153645 98154122 -51362915 - L1M4 LINE L1 -3026 3120 2606 2 1333 501 288 76 54 chr6 98154140 98154364 -51362673 - L1M4 LINE L1 -3735 2411 2183 2 1333 837 224 9 64 chr6 98154376 98154595 -51362442 - B3 SINE B2 -5 211 5 2 1333 687 184 345 0 chr6 98155913 98156081 -51360956 + URR1A DNA MER1_type 1 226 0 2 1333 334 229 24 12 chr6 98156404 98156488 -51360549 + MLT1A0 LTR MaLR 275 359 -6 2 1333 689 286 131 60 chr6 98156777 98157275 -51359762 - MT2A LTR ERVL 0 533 1 2 1333 418 284 163 32 chr6 98157469 98157752 -51359285 - MER33 DNA MER1_type -196 128 1 2 1333 22 0 0 0 chr6 98157931 98157953 -51359084 + AT_rich Low_complexity Low_complexity 1 22 0 2 1333 249 139 0 0 chr6 98160688 98160731 -51356306 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1333 441 0 0 0 chr6 98161365 98161414 -51355623 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1333 456 231 52 44 chr6 98163320 98163456 -51353581 + B1F SINE Alu 4 140 -9 2 1333 893 238 29 0 chr6 98164481 98164687 -51352350 + B3 SINE B2 5 216 0 2 1333 693 24 0 0 chr6 98169110 98169193 -51347844 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 1333 1132 39 7 7 chr6 98169300 98169455 -51347582 + (TTCC)n Simple_repeat Simple_repeat 2 156 0 2 1333 1242 100 0 0 chr6 98169715 98169895 -51347142 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 2 1333 923 135 6 0 chr6 98169898 98170054 -51346983 + (TCCCC)n Simple_repeat Simple_repeat 4 160 0 2 1333 781 229 193 11 chr6 98170054 98170235 -51346802 - B3 SINE B2 -1 215 2 2 1333 195 204 0 0 chr6 98170630 98170674 -51346363 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1333 1038 260 54 0 chr6 98170689 98170883 -51346154 - B4 SINE B4 -4 288 85 2 1333 258 32 0 0 chr6 98170883 98170914 -51346123 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1333 1038 260 54 0 chr6 98170914 98170977 -51346060 - B4 SINE B4 -208 84 18 2 1333 555 16 0 0 chr6 98171714 98171778 -51345259 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1333 333 0 0 0 chr6 98172769 98172806 -51344231 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 2 166 825 173 7 35 chr6 98172807 98172951 -51344086 - B1_Mur3 SINE Alu -8 141 2 2 1334 278 220 86 138 chr6 98173108 98173224 -51343813 + PB1D7 SINE Alu 11 120 0 2 1334 313 341 52 7 chr6 98173280 98173416 -51343621 - B1F1 SINE Alu -7 142 1 2 1334 207 176 0 0 chr6 98174466 98174500 -51342537 + T-rich Low_complexity Low_complexity 4 37 0 2 1334 676 307 74 66 chr6 98174978 98175058 -51341979 + MTE2a LTR MaLR 1 76 -303 2 1334 1054 154 148 5 chr6 98175058 98175254 -51341783 + URR1A DNA MER1_type 1 224 -2 2 1334 676 307 74 66 chr6 98175254 98175539 -51341498 + MTE2a LTR MaLR 77 369 -10 2 1334 3784 13 2 0 chr6 98175899 98176294 -51340743 - MTA_Mm LTR MaLR 0 396 1 2 1334 10325 16 0 0 chr6 98176294 98177392 -51339645 - MTA_Mm-int LTR MaLR 0 1098 1 2 1334 3784 13 2 0 chr6 98177392 98177787 -51339250 - MTA_Mm LTR MaLR 0 396 1 2 1334 1107 129 0 0 chr6 98178228 98178406 -51338631 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 2 1334 303 28 0 0 chr6 98180590 98180626 -51336411 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1334 331 320 6 95 chr6 98180741 98180910 -51336127 - B4 SINE B4 -91 201 48 2 1334 270 0 0 0 chr6 98182675 98182705 -51334332 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1334 481 282 135 97 chr6 98182709 98182976 -51334061 - B4 SINE B4 -7 285 9 2 1334 378 61 0 0 chr6 98183375 98183424 -51333613 + (TCC)n Simple_repeat Simple_repeat 3 51 0 2 1334 297 226 0 0 chr6 98183570 98183632 -51333405 + MER53 DNA hAT 131 192 -1 2 1334 342 264 109 0 chr6 98183757 98183867 -51333170 - MTEb LTR MaLR -1 378 257 2 1334 264 303 83 83 chr6 98184092 98184225 -51332812 - MER20 DNA MER1_type -84 135 3 2 1334 332 194 15 0 chr6 98186352 98186419 -51330618 - ID_B1 SINE B4 -28 196 129 2 1334 229 245 109 69 chr6 98186419 98186447 -51330590 - B1F2 SINE Alu -26 107 19 2 1334 180 0 0 0 chr6 98188399 98188419 -51328618 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1334 300 211 43 40 chr6 98188543 98188619 -51328418 + B4 SINE B4 4 81 -211 2 1334 578 297 47 80 chr6 98188800 98189100 -51327937 - B4A SINE B4 0 292 3 2 1334 297 0 0 0 chr6 98189876 98189909 -51327128 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1334 272 254 0 0 chr6 98190160 98190219 -51326818 + ID_B1 SINE B4 111 169 -55 2 1334 388 279 8 51 chr6 98190212 98190329 -51326708 - B4A SINE B4 -177 115 4 2 1334 208 111 56 0 chr6 98190547 98190583 -51326454 + (CATG)n Simple_repeat Simple_repeat 4 41 0 2 1334 374 0 22 0 chr6 98190590 98190636 -51326401 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1334 346 279 65 52 chr6 98192692 98192847 -51324190 + LTR33A LTR ERVL 99 255 -265 3 1334 224 216 0 0 chr6 98194929 98194980 -51322057 + T-rich Low_complexity Low_complexity 5 55 0 3 1334 692 226 0 57 chr6 98195718 98195859 -51321178 + B1_Mur2 SINE Alu 1 133 -16 3 1334 780 11 0 0 chr6 98195899 98195988 -51321049 + (GAGAA)n Simple_repeat Simple_repeat 4 92 0 3 1334 439 100 0 43 chr6 98196046 98196140 -51320897 + (TCTCTG)n Simple_repeat Simple_repeat 5 94 0 3 1334 409 332 48 75 chr6 98196140 98196163 -51320874 - B4A SINE B4 0 292 271 3 1334 423 0 0 0 chr6 98196163 98196210 -51320827 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1334 552 314 48 57 chr6 98196210 98196479 -51320558 - B4 SINE B4 -22 270 8 3 1334 1231 214 66 4 chr6 98197349 98197607 -51319430 - B4 SINE B4 -18 274 1 3 1334 22 0 0 0 chr6 98201307 98201329 -51315708 + AT_rich Low_complexity Low_complexity 1 22 0 3 1334 207 0 0 0 chr6 98201435 98201458 -51315579 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1334 180 229 20 20 chr6 98201953 98202002 -51315035 - L2c LINE L2 0 3387 3339 3 1334 266 180 16 0 chr6 98202348 98202409 -51314628 + CT-rich Low_complexity Low_complexity 4 65 0 3 1334 288 321 0 0 chr6 98202973 98203054 -51313983 - ID2 SINE ID -1 82 2 3 1334 207 0 0 0 chr6 98203069 98203092 -51313945 + (TGG)n Simple_repeat Simple_repeat 2 24 0 3 1334 357 309 31 0 chr6 98203095 98203192 -51313845 - PB1D7 SINE Alu -20 100 1 3 1334 275 36 70 18 chr6 98203378 98203435 -51313602 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 3 1334 277 263 135 10 chr6 98203787 98203883 -51313154 + PB1D10 SINE Alu 1 108 -9 3 1334 288 223 46 27 chr6 98204136 98204226 -51312811 - B1F1 SINE Alu -24 93 7 3 1334 262 247 112 45 chr6 98204149 98204238 -51312799 - B4 SINE B4 -118 174 80 3 1334 351 0 0 0 chr6 98204835 98204874 -51312163 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1334 515 43 14 0 chr6 98204874 98204943 -51312094 + (GA)n Simple_repeat Simple_repeat 1 71 0 3 1334 1773 91 12 0 chr6 98206251 98206503 -51310534 - ORR1A3-int LTR MaLR -460 1503 1249 3 1334 1893 94 36 0 chr6 98206502 98206778 -51310259 + ORR1A3-int LTR MaLR 993 1278 -685 3 1334 205 353 78 31 chr6 98207003 98207196 -51309841 - MIR SINE MIR -46 216 15 3 1334 230 228 0 0 chr6 98208803 98208860 -51308177 + CT-rich Low_complexity Low_complexity 2 58 0 3 1334 426 85 0 0 chr6 98208863 98208922 -51308115 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1334 189 0 0 0 chr6 98209030 98209051 -51307986 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1334 29 0 0 0 chr6 98209987 98210016 -51307021 + AT_rich Low_complexity Low_complexity 1 29 0 3 1334 189 74 0 0 chr6 98210244 98210271 -51306766 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 1334 717 266 59 16 chr6 98210635 98210822 -51306215 - B3A SINE B2 -3 195 1 3 1334 1746 225 62 11 chr6 98210881 98211261 -51305776 + Lx9 LINE L1 7172 7573 -71 3 1334 243 0 0 0 chr6 98211261 98211288 -51305749 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1334 369 0 0 0 chr6 98211288 98211328 -51305709 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1334 1746 225 62 11 chr6 98211328 98211396 -51305641 + Lx9 LINE L1 7574 7643 -1 3 1334 863 186 109 35 chr6 98211756 98211957 -51305080 - B3 SINE B2 0 216 1 3 1334 523 308 14 0 chr6 98212645 98212791 -51304246 + B1F1 SINE Alu 1 148 -1 3 1334 378 0 0 0 chr6 98212972 98213014 -51304023 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1334 688 241 19 73 chr6 98213035 98213241 -51303796 + B3A SINE B2 4 198 0 3 1334 205 235 0 19 chr6 98213332 98213384 -51303653 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 3 1334 860 323 25 18 chr6 98213392 98213676 -51303361 - B4A SINE B4 -6 286 1 3 1334 263 281 41 20 chr6 98214035 98214133 -51302904 - MIRb SINE MIR -24 244 145 3 1334 214 252 106 34 chr6 98216066 98216174 -51300863 - MIR3 SINE MIR -83 193 81 3 1334 207 0 0 0 chr6 98216371 98216394 -51300643 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1334 261 247 53 27 chr6 98216689 98216764 -51300273 - B1F1 SINE Alu -56 93 17 3 1334 230 0 33 0 chr6 98216986 98217016 -51300021 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1334 690 290 59 67 chr6 98217173 98217443 -51299594 + B4 SINE B4 3 270 -22 3 1334 423 0 0 0 chr6 98217531 98217578 -51299459 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1334 376 290 52 94 chr6 98218704 98218917 -51298120 + B4A SINE B4 3 206 -86 3 1334 507 90 0 0 chr6 98218917 98218995 -51298042 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1334 364 302 201 10 chr6 98219045 98219239 -51297798 + B4A SINE B4 54 284 -8 3 1334 531 0 0 0 chr6 98219329 98219388 -51297649 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1334 372 22 0 0 chr6 98219388 98219432 -51297605 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1334 248 323 39 46 chr6 98219447 98219577 -51297460 - RSINE1 SINE B4 -34 131 3 3 1334 187 352 21 42 chr6 98219810 98219905 -51297132 + MIRc SINE MIR 18 110 -158 3 1334 228 331 11 98 chr6 98220032 98220216 -51296821 + B4A SINE B4 1 168 -124 3 1334 180 0 0 0 chr6 98220244 98220264 -51296773 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1334 405 0 0 0 chr6 98220340 98220385 -51296652 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1334 252 0 0 0 chr6 98220385 98220412 -51296625 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1334 185 163 0 44 chr6 98220441 98220486 -51296551 + C-rich Low_complexity Low_complexity 3 45 0 3 1334 198 342 120 0 chr6 98220872 98220989 -51296048 - L2 LINE L2 -1368 2051 1921 3 1334 892 242 10 15 chr6 98221649 98221846 -51295191 - B3 SINE B2 0 216 21 3 1334 650 225 150 0 chr6 98224970 98225130 -51291907 + ID_B1 SINE B4 1 184 -40 3 1334 312 280 0 70 chr6 98225044 98225144 -51291893 + PB1D10 SINE Alu 18 110 -7 3 1334 663 249 111 21 chr6 98225251 98225440 -51291597 + B3 SINE B2 1 206 -10 3 1334 262 212 30 0 chr6 98227228 98227294 -51289743 + Lx9 LINE L1 7403 7470 -174 3 1334 225 159 0 0 chr6 98227294 98227338 -51289699 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1334 939 235 19 5 chr6 98227461 98227675 -51289362 - URR1A DNA MER1_type -7 219 3 3 1334 389 125 0 40 chr6 98228271 98228346 -51288691 + T-rich Low_complexity Low_complexity 1 72 0 3 1334 430 240 29 75 chr6 98228519 98228650 -51288387 - MTE2b LTR MaLR -4 415 273 3 1334 296 175 16 0 chr6 98228650 98228713 -51288324 + A-rich Low_complexity Low_complexity 5 68 0 3 1334 904 302 28 74 chr6 98228713 98228996 -51288041 - MTE2b LTR MaLR -109 270 1 3 1334 402 74 0 0 chr6 98230022 98230076 -51286961 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1334 1204 275 38 15 chr6 98231494 98231834 -51285203 - ORR1E LTR MaLR -5 354 7 3 1334 1026 100 0 0 chr6 98233385 98233565 -51283472 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1334 228 161 0 0 chr6 98233565 98233627 -51283410 + (CTG)n Simple_repeat Simple_repeat 1 62 0 3 1334 1230 74 0 0 chr6 98233627 98233802 -51283235 + (TTCTCC)n Simple_repeat Simple_repeat 4 178 0 3 1334 185 351 27 0 chr6 98234354 98234428 -51282609 - MIRc SINE MIR -118 150 75 3 1334 252 43 65 0 chr6 98236347 98236393 -51280644 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1334 453 19 0 0 chr6 98237402 98237456 -51279581 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1334 189 171 0 0 chr6 98237899 98237934 -51279103 + T-rich Low_complexity Low_complexity 1 35 0 3 1334 982 108 4 216 chr6 98239111 98239347 -51277690 + B2_Mm1t SINE B2 2 187 -6 3 1334 1112 52 15 0 chr6 98240384 98240520 -51276517 + B1_Mm SINE Alu 1 138 -9 3 1334 207 0 0 0 chr6 98240520 98240543 -51276494 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1334 807 105 0 0 chr6 98241359 98241483 -51275554 + (TG)n Simple_repeat Simple_repeat 2 125 0 3 1334 1791 235 19 6 chr6 98244173 98244537 -51272500 + ORR1D1 LTR MaLR 1 369 -5 3 1334 32 0 0 0 chr6 98244609 98244641 -51272396 + AT_rich Low_complexity Low_complexity 1 32 0 3 1334 396 0 0 0 chr6 98244768 98244812 -51272225 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1334 973 170 111 11 chr6 98245153 98245343 -51271694 + MTC LTR MaLR 1 209 -212 3 1334 26 0 0 0 chr6 98245408 98245434 -51271603 + AT_rich Low_complexity Low_complexity 1 26 0 3 1334 228 86 0 0 chr6 98246720 98246755 -51270282 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1334 23 0 0 0 chr6 98247689 98247712 -51269325 + AT_rich Low_complexity Low_complexity 1 23 0 3 1334 335 286 48 40 chr6 98248205 98248329 -51268708 + ORR1E LTR MaLR 39 163 -196 3 1334 14794 10 0 0 chr6 98249197 98251637 -51265400 - L1Md_A LINE L1 0 6582 4143 3 1334 298 278 89 67 chr6 98251788 98251923 -51265114 - MLT1A1 LTR MaLR -3 405 268 3 1334 2442 129 40 8 chr6 98252182 98252580 -51264457 - MTC LTR MaLR -10 411 1 3 1334 1040 74 0 0 chr6 98252817 98252966 -51264071 + L1Md_F2 LINE L1 6434 6582 0 3 1334 928 304 20 53 chr6 98253322 98253621 -51263416 + B4A SINE B4 2 290 -2 3 1334 22 70 0 0 chr6 98253888 98253931 -51263106 + AT_rich Low_complexity Low_complexity 1 43 0 3 1334 239 292 152 40 chr6 98254320 98254445 -51262592 + B1F2 SINE Alu 1 139 -10 3 1334 747 124 0 0 chr6 98254844 98254989 -51262048 + (TC)n Simple_repeat Simple_repeat 1 145 0 3 1334 618 220 0 8 chr6 98256592 98256711 -51260326 - B3A SINE B2 -48 150 33 3 1334 510 269 174 0 chr6 98256719 98256972 -51260065 - L1ME1 LINE L1 -297 5882 5586 4 1334 561 171 0 0 chr6 98258243 98258360 -51258677 + GA-rich Low_complexity Low_complexity 2 118 0 4 1334 782 303 76 35 chr6 98259418 98259760 -51257277 + ORR1E LTR MaLR 2 357 -2 4 1334 497 335 81 39 chr6 98259815 98260098 -51256939 - Lx8 LINE L1 -7 7466 7172 4 1334 290 216 12 75 chr6 98260207 98260287 -51256750 - B3A SINE B2 -121 77 3 4 1334 362 292 76 72 chr6 98260533 98260784 -51256253 - L1ME4a LINE L1 -237 5887 5636 4 1334 485 330 97 19 chr6 98260955 98261162 -51255875 + MER58A DNA MER1_type 1 223 -1 4 1334 502 288 110 0 chr6 98262309 98262455 -51254582 - RSINE1 SINE B4 -2 163 2 4 1334 198 0 0 0 chr6 98262570 98262592 -51254445 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 4 1334 362 294 49 15 chr6 98262789 98263058 -51253979 - L1M5 LINE L1 -348 5814 5532 4 1334 267 344 68 15 chr6 98263688 98263821 -51253216 - MIR SINE MIR -88 174 35 4 1334 423 333 142 10 chr6 98264348 98264636 -51252401 - MLT1D LTR MaLR 0 505 180 4 1334 376 273 27 9 chr6 98264651 98264762 -51252275 - PB1 SINE Alu -2 125 13 4 1334 584 292 85 82 chr6 98264933 98265250 -51251787 + ORR1E LTR MaLR 42 359 0 4 1334 518 358 46 9 chr6 98265256 98265473 -51251564 + ORR1E-int LTR MaLR 1 225 -1355 4 1334 500 302 58 40 chr6 98265517 98265741 -51251296 + ORR1E-int LTR MaLR 290 517 -1063 4 1334 3039 71 8 2 chr6 98265777 98266173 -51250864 + MTB LTR MaLR 3 400 0 4 1334 1796 318 67 48 chr6 98266179 98267210 -51249827 + Lx8 LINE L1 6414 7463 -10 4 1334 1213 331 84 60 chr6 98267765 98268452 -51248585 + ORR1E-int LTR MaLR 730 1433 -147 4 1334 738 298 101 66 chr6 98268502 98268856 -51248181 + ORR1E LTR MaLR 1 379 0 4 1334 353 287 206 31 chr6 98270093 98270316 -51246721 + L2a LINE L2 3163 3424 -2 4 1334 272 27 27 0 chr6 98270708 98270745 -51246292 + (TGG)n Simple_repeat Simple_repeat 1 38 0 4 1334 756 292 69 85 chr6 98270819 98271066 -51245971 - B4A SINE B4 -2 290 48 4 1334 307 176 0 0 chr6 98272555 98272606 -51244431 - HAL1-3A_ME LINE L1 -833 2025 1975 4 1334 225 0 0 0 chr6 98272606 98272631 -51244406 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1334 344 140 0 17 chr6 98272636 98272694 -51244343 - HAL1-3A_ME LINE L1 -840 2018 1962 4 1334 198 0 0 0 chr6 98273918 98273940 -51243097 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1334 196 28 83 0 chr6 98275439 98275475 -51241562 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 4 1334 757 21 11 0 chr6 98275475 98275569 -51241468 - B1_Mm SINE Alu 0 147 53 4 1334 206 377 8 26 chr6 98276034 98276151 -51240886 - MIRb SINE MIR -133 135 21 4 1334 356 297 22 0 chr6 98276335 98276426 -51240611 + B4A SINE B4 1 93 -199 4 1334 432 0 0 0 chr6 98276472 98276520 -51240517 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 4 1334 717 161 0 0 chr6 98277752 98277882 -51239155 + (TA)n Simple_repeat Simple_repeat 1 130 0 4 1334 303 28 0 0 chr6 98278020 98278056 -51238981 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1334 286 174 113 28 chr6 98278124 98278195 -51238842 + ID4 SINE ID 5 81 -2 4 1334 483 342 55 29 chr6 98282068 98282342 -51234695 - B4 SINE B4 -10 282 2 4 1334 230 354 101 0 chr6 98282480 98282492 -51234545 + ID_B1 SINE B4 71 90 -134 4 1334 275 304 101 0 chr6 98282492 98282571 -51234466 + PB1D10 SINE Alu 2 88 -29 4 1334 1042 125 6 6 chr6 98282595 98282772 -51234265 + (GAA)n Simple_repeat Simple_repeat 3 179 0 4 1334 453 141 0 0 chr6 98284926 98285025 -51232012 + (TC)n Simple_repeat Simple_repeat 2 100 0 4 1334 261 0 0 0 chr6 98286180 98286209 -51230828 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1334 403 305 11 109 chr6 98286483 98286667 -51230370 + MER102b DNA MER1_type 1 166 -175 4 1334 464 212 27 9 chr6 98287474 98287700 -51229337 + (TAGA)n Simple_repeat Simple_repeat 1 230 0 4 1334 346 143 26 0 chr6 98287783 98287860 -51229177 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 4 1334 561 106 29 0 chr6 98287907 98288011 -51229026 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 4 1334 231 36 0 0 chr6 98288819 98288847 -51228190 + (TAG)n Simple_repeat Simple_repeat 3 30 0 4 1334 253 331 92 52 chr6 98288859 98289012 -51228025 + MIRb SINE MIR 41 199 -69 4 1334 201 218 117 75 chr6 98289139 98289280 -51227757 - MIR SINE MIR -88 188 35 4 1334 234 0 0 0 chr6 98289887 98289913 -51227124 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1334 545 0 15 0 chr6 98289913 98289977 -51227060 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1334 382 233 29 5 chr6 98289995 98290203 -51226834 + GA-rich Low_complexity Low_complexity 1 213 0 4 1334 1077 279 0 28 chr6 98290213 98290460 -51226577 - B4A SINE B4 -25 267 28 4 1334 344 327 54 24 chr6 98290726 98290892 -51226145 + MIR SINE MIR 15 185 -77 4 1334 735 167 256 0 chr6 98291460 98291640 -51225397 - URR1A DNA MER1_type 0 226 1 4 1334 2234 181 5 5 chr6 98294405 98294787 -51222250 + MT2A LTR ERVL 1 382 -151 4 1334 627 219 6 11 chr6 98294802 98294982 -51222055 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 1334 441 0 0 0 chr6 98294982 98295031 -51222006 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 4 1334 724 92 17 0 chr6 98295337 98295456 -51221581 + (TCTA)n Simple_repeat Simple_repeat 2 122 0 4 1334 625 268 71 15 chr6 98295459 98295656 -51221381 - ID_B1 SINE B4 -14 210 3 4 1334 1633 222 94 105 chr6 98296220 98296753 -51220284 + MT2A LTR ERVL 1 527 -6 4 1334 261 297 72 13 chr6 98297560 98297723 -51219314 - L1MEf LINE L1 -4565 1635 1452 4 1334 240 342 0 0 chr6 98297723 98297816 -51219221 - ID4_ SINE ID -56 96 4 4 1334 275 252 50 50 chr6 98297828 98297949 -51219088 - PB1 SINE Alu -6 121 1 4 1334 203 360 21 7 chr6 98297977 98298117 -51218920 + CT-rich Low_complexity Low_complexity 2 143 0 4 1334 608 305 149 47 chr6 98298123 98298632 -51218405 - L1MEf LINE L1 -4905 1295 735 4 1334 5175 111 4 8 chr6 98299255 98300006 -51217031 + L1_Mus4 LINE L1 5883 6630 -6 4 1334 969 58 0 0 chr6 98300604 98300741 -51216296 + (TC)n Simple_repeat Simple_repeat 2 138 0 4 1334 270 0 0 0 chr6 98300741 98300770 -51216267 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1334 312 197 32 16 chr6 98300812 98300874 -51216163 - ID4_ SINE ID -19 64 2 4 1334 1309 276 60 6 chr6 98300991 98301356 -51215681 + MTD LTR MaLR 23 407 -12 4 1334 365 241 83 9 chr6 98303538 98303647 -51213390 + MLT2F LTR ERVL 539 655 -8 4 1335 533 349 98 28 chr6 98304664 98304950 -51212087 + Tigger7 DNA MER2_type 1 306 -2185 4 1335 1021 278 84 10 chr6 98305162 98305471 -51211566 - MTEa LTR MaLR -2 377 46 4 1335 238 333 119 0 chr6 98305517 98305601 -51211436 + Tigger7 DNA MER2_type 2384 2477 -14 4 1335 23 0 0 0 chr6 98305940 98305963 -51211074 + AT_rich Low_complexity Low_complexity 1 23 0 4 1335 1077 319 148 34 chr6 98306366 98307151 -51209886 - Tigger5 DNA MER2_type -1505 901 28 4 1335 377 51 0 33 chr6 98307303 98307364 -51209673 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 4 1335 2084 225 142 7 chr6 98307756 98308341 -51208696 - Lx6 LINE L1 -7 7453 6790 4 1335 2073 79 10 0 chr6 98308470 98308762 -51208275 - L1Md_F2 LINE L1 -451 6131 5837 4 1335 3740 64 0 18 chr6 98308762 98309253 -51207784 + L1Md_F2 LINE L1 6099 6580 -2 4 1335 221 0 35 0 chr6 98309353 98309382 -51207655 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1335 33 0 0 0 chr6 98309978 98310011 -51207026 + AT_rich Low_complexity Low_complexity 1 33 0 4 1335 459 0 0 0 chr6 98310969 98311020 -51206017 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1335 671 282 72 27 chr6 98311879 98312077 -51204960 + B4A SINE B4 3 212 -80 4 1335 387 0 0 0 chr6 98312077 98312120 -51204917 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1335 671 282 72 27 chr6 98312120 98312143 -51204894 + B4A SINE B4 213 234 -58 4 1335 974 143 0 0 chr6 98314806 98314953 -51202084 + B1_Mus1 SINE Alu 1 147 -1 4 1335 591 84 0 0 chr6 98316570 98316665 -51200372 + (GA)n Simple_repeat Simple_repeat 1 95 0 4 1335 708 268 72 42 chr6 98316666 98316931 -51200106 - B4A SINE B4 -16 276 4 4 1335 205 118 19 19 chr6 98317816 98317868 -51199169 + T-rich Low_complexity Low_complexity 1 52 0 4 1335 1148 83 0 0 chr6 98317868 98318013 -51199024 - B1_Mus2 SINE Alu -1 146 2 4 1335 345 212 0 0 chr6 98318290 98318356 -51198681 - ID4_ SINE ID -13 70 5 4 1335 502 297 84 22 chr6 98318475 98318654 -51198383 + MER68 LTR ERVL 27 216 -347 4 1335 379 261 51 0 chr6 98318712 98318848 -51198189 + MER68 LTR ERVL 439 599 -8 4 1335 1101 70 0 7 chr6 98318994 98319138 -51197899 - B1_Mus2 SINE Alu 0 147 5 4 1335 263 378 7 59 chr6 98319511 98319646 -51197391 + MLT1L LTR MaLR 107 234 -376 4 1335 836 271 67 29 chr6 98319944 98320253 -51196784 - MER2 DNA MER2_type -1 344 24 4 1335 552 230 54 67 chr6 98320253 98320402 -51196635 + B1F SINE Alu 3 149 0 4 1335 667 237 8 0 chr6 98320272 98320403 -51196634 + ID_B1 SINE B4 93 224 0 4 1335 378 0 0 0 chr6 98320493 98320535 -51196502 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1335 207 0 0 0 chr6 98320535 98320557 -51196480 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1335 704 323 111 27 chr6 98320579 98320840 -51196197 - B4A SINE B4 -2 290 8 4 1335 709 305 8 85 chr6 98321671 98321918 -51195119 + B4A SINE B4 1 228 -64 4 1335 505 269 46 40 chr6 98321921 98322072 -51194965 + RSINE1 SINE B4 6 157 -8 4 1335 423 0 0 0 chr6 98322085 98322132 -51194905 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1335 387 0 0 0 chr6 98322133 98322176 -51194861 + (TTA)n Simple_repeat Simple_repeat 1 43 0 4 1335 653 213 21 47 chr6 98322478 98322670 -51194367 - L1MC3 LINE L1 0 7785 7599 4 1335 364 314 15 50 chr6 98322842 98323043 -51193994 - L1MC3 LINE L1 -1720 6065 5872 4 1335 898 55 23 0 chr6 98323256 98323384 -51193653 + (GAAA)n Simple_repeat Simple_repeat 3 133 0 4 1335 373 36 36 0 chr6 98323386 98323441 -51193596 + (GGGA)n Simple_repeat Simple_repeat 1 57 0 4 1335 331 314 192 18 chr6 98323638 98323862 -51193175 - L1MD LINE L1 -2442 5553 5291 5 1335 28 0 0 0 chr6 98323902 98323930 -51193107 + AT_rich Low_complexity Low_complexity 1 28 0 5 1335 2213 286 99 14 chr6 98324040 98324817 -51192220 - Lx8 LINE L1 -225 7248 6406 5 1335 632 218 82 41 chr6 98325288 98325532 -51191505 - Lx7 LINE L1 -1849 5847 5594 5 1335 271 290 149 81 chr6 98326259 98326582 -51190455 - MLT1A0 LTR MaLR -7 358 14 5 1335 890 167 73 12 chr6 98326690 98326854 -51190183 + MTC LTR MaLR 1 174 -247 5 1335 284 219 51 122 chr6 98327768 98327924 -51189113 + RMER17A LTR ERVK 346 490 -261 5 1335 7070 75 14 4 chr6 98327924 98329061 -51187976 + L1_Mus4 LINE L1 5616 6636 0 5 1335 528 68 0 0 chr6 98329200 98329273 -51187764 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1335 548 331 65 59 chr6 98329639 98329976 -51187061 + MLT1A LTR MaLR 36 374 0 5 1335 756 173 21 7 chr6 98330390 98330530 -51186507 + B1_Mus2 SINE Alu 1 142 -5 5 1335 491 284 82 57 chr6 98331025 98331219 -51185818 - B4A SINE B4 -58 234 36 5 1335 353 258 19 47 chr6 98331337 98331443 -51185594 - Tigger15a DNA TcMar -440 275 173 5 1335 198 233 0 23 chr6 98331511 98331555 -51185482 - MIRc SINE MIR -135 133 91 5 1335 330 346 75 48 chr6 98331868 98332162 -51184875 + MER113 DNA MER1_type 101 402 -119 5 1335 823 273 141 9 chr6 98332476 98332809 -51184228 + MER63B DNA AcHobo 51 427 -9 5 1335 387 0 0 0 chr6 98334742 98334785 -51182252 + (CAGA)n Simple_repeat Simple_repeat 3 45 0 5 1335 240 333 61 35 chr6 98337016 98337131 -51179906 - MER5A DNA MER1_type -3 186 69 5 1335 1463 43 5 0 chr6 98337370 98337556 -51179481 - L1Md_F2 LINE L1 -544 6038 5852 5 1335 4308 44 2 0 chr6 98337556 98338078 -51178959 + L1Md_F2 LINE L1 6060 6582 0 5 1335 459 290 168 31 chr6 98338463 98338719 -51178318 + B4A SINE B4 2 292 0 5 1335 216 163 8 75 chr6 98338780 98338913 -51178124 + (TCTCTG)n Simple_repeat Simple_repeat 3 126 0 5 1335 180 77 0 0 chr6 98338909 98338935 -51178102 + (TCTCCC)n Simple_repeat Simple_repeat 5 30 0 5 1335 23 0 0 0 chr6 98339052 98339075 -51177962 + AT_rich Low_complexity Low_complexity 1 23 0 5 1335 329 312 36 26 chr6 98339589 98339783 -51177254 - L1MC2 LINE L1 -65 7720 7525 5 1335 595 56 0 0 chr6 98339811 98339900 -51177137 - L1_Mus3 LINE L1 -6 6632 6544 5 1335 212 171 0 0 chr6 98339906 98339947 -51177090 + T-rich Low_complexity Low_complexity 1 41 0 5 1335 263 351 68 84 chr6 98339953 98340040 -51176997 + MTEb LTR MaLR 1 87 -287 5 1335 3896 79 63 2 chr6 98340040 98340609 -51176428 + Lx2 LINE L1 6394 6997 0 5 1335 326 330 51 70 chr6 98340609 98340901 -51176136 + MTEb LTR MaLR 88 379 0 5 1335 267 268 14 0 chr6 98340944 98341015 -51176022 - L1MC2 LINE L1 -395 7390 7319 5 1335 671 300 48 42 chr6 98341061 98341350 -51175687 + B4A SINE B4 2 292 0 5 1335 229 280 47 65 chr6 98341422 98341529 -51175508 - L1MC2 LINE L1 -517 7268 7164 5 1335 979 229 81 26 chr6 98341600 98341873 -51175164 - Lx2B LINE L1 -1 6999 6712 5 1335 797 316 90 70 chr6 98341888 98342586 -51174451 - L1MC2 LINE L1 -692 7093 6382 5 1335 662 264 71 28 chr6 98342687 98343010 -51174027 - Lx9 LINE L1 -104 7540 7204 5 1335 1499 306 46 28 chr6 98343241 98343935 -51173102 - L1MC2 LINE L1 -1573 6212 5504 5 1335 531 112 0 0 chr6 98343980 98344060 -51172977 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 5 1335 382 288 80 16 chr6 98344064 98344251 -51172786 - L1MC2 LINE L1 -865 5479 5281 5 1335 287 61 41 0 chr6 98344268 98344317 -51172720 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 1335 210 37 0 0 chr6 98344424 98344451 -51172586 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1335 458 324 119 35 chr6 98344502 98345150 -51171887 - L1MC2 LINE L1 -1033 5113 4407 5 1335 559 273 12 47 chr6 98345151 98345320 -51171717 + ID_B1 SINE B4 58 220 -4 5 1335 237 356 15 8 chr6 98345384 98345517 -51171520 - L1MC2 LINE L1 -1819 4327 4194 5 1335 505 281 14 7 chr6 98345530 98345677 -51171360 - B1F SINE Alu -1 148 1 5 1335 658 312 44 19 chr6 98345793 98346153 -51170884 - L1MDa LINE L1 -1911 4626 4258 5 1335 405 268 61 76 chr6 98346179 98346377 -51170660 - B3A SINE B2 0 198 4 5 1335 275 209 60 0 chr6 98346689 98346756 -51170281 - L1MDa LINE L1 -4432 2201 2131 5 1335 238 321 124 45 chr6 98346780 98347136 -51169901 - L1MDa LINE L1 -4552 2081 1698 5 1335 474 325 0 0 chr6 98347151 98347302 -51169735 + (TG)n Simple_repeat Simple_repeat 2 152 0 5 1335 217 202 23 23 chr6 98347314 98347400 -51169637 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 5 1335 492 276 82 34 chr6 98347513 98347865 -51169172 - L1MDa LINE L1 -4988 1552 1184 5 1335 235 342 38 70 chr6 98347945 98348102 -51168935 - L1MDa LINE L1 -5682 951 800 5 1335 844 338 79 11 chr6 98348144 98348512 -51168525 - L1MDa LINE L1 -6074 559 167 5 1335 399 282 24 31 chr6 98350672 98350789 -51166248 - PB1D10 SINE Alu -2 115 2 5 1335 3492 149 70 24 chr6 98350852 98351511 -51165526 + RMER6A LTR ERVK 41 729 -27 5 1335 261 0 0 0 chr6 98351519 98351548 -51165489 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1335 457 294 127 61 chr6 98351619 98351800 -51165237 + B3A SINE B2 6 198 0 5 1335 1716 234 135 15 chr6 98352684 98353152 -51163885 - RMER15 LTR ERVL -22 553 30 5 1335 34 0 0 0 chr6 98353426 98353460 -51163577 + AT_rich Low_complexity Low_complexity 1 34 0 5 1335 360 0 0 0 chr6 98354177 98354217 -51162820 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1335 844 288 101 3 chr6 98354270 98354556 -51162481 - MER2 DNA MER2_type -9 336 23 5 1335 388 257 28 9 chr6 98354632 98354738 -51162299 + MER53 DNA hAT 74 181 -12 5 1335 237 159 0 0 chr6 98354739 98354783 -51162254 + (CAT)n Simple_repeat Simple_repeat 2 45 0 5 1335 367 335 21 86 chr6 98354819 98355145 -51161892 - B4A SINE B4 -17 275 2 5 1335 22 35 0 0 chr6 98355484 98355513 -51161524 + AT_rich Low_complexity Low_complexity 1 29 0 5 1335 510 70 0 0 chr6 98355594 98355665 -51161372 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1335 237 250 0 11 chr6 98355670 98355733 -51161304 - PB1D10 SINE Alu -87 62 3 5 1335 301 162 0 29 chr6 98356399 98356469 -51160568 + C-rich Low_complexity Low_complexity 1 68 0 5 1335 28 0 0 0 chr6 98356633 98356661 -51160376 + AT_rich Low_complexity Low_complexity 1 28 0 5 1335 354 45 0 0 chr6 98356709 98356753 -51160284 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1335 906 296 26 26 chr6 98356973 98357313 -51159724 + AmnSINE1 SINE SINE 236 575 0 5 1335 21 71 0 0 chr6 98357452 98357494 -51159543 + AT_rich Low_complexity Low_complexity 1 42 0 5 1335 22 35 0 0 chr6 98357595 98357624 -51159413 + AT_rich Low_complexity Low_complexity 1 29 0 5 1335 597 64 0 0 chr6 98357821 98357899 -51159138 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 5 1335 1429 186 70 3 chr6 98358682 98358984 -51158053 - Lx2 LINE L1 -1 6996 6675 5 1335 1095 285 70 30 chr6 98358990 98359357 -51157680 + MTD LTR MaLR 39 421 0 5 1335 467 275 80 45 chr6 98360103 98360406 -51156631 + ORR1E LTR MaLR 1 375 -4 5 1335 207 0 0 0 chr6 98360922 98360945 -51156092 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 5 1335 556 337 29 19 chr6 98362626 98362832 -51154205 + MER58A DNA MER1_type 12 219 -5 5 1335 28 48 0 0 chr6 98362996 98363038 -51153999 + AT_rich Low_complexity Low_complexity 1 42 0 5 1335 267 317 18 55 chr6 98363652 98363762 -51153275 + MLT1H LTR MaLR 80 185 -364 5 1335 284 366 32 0 chr6 98363782 98363905 -51153132 - L2 LINE L2 -1286 2133 2007 5 1335 1502 225 61 6 chr6 98365489 98365833 -51151204 - MTEa LTR MaLR -9 370 8 5 1335 255 307 11 54 chr6 98366429 98366522 -51150515 - L2a LINE L2 0 3426 3338 5 1335 257 330 17 34 chr6 98366556 98366675 -51150362 - L2a LINE L2 -981 2438 2322 5 1335 485 307 64 53 chr6 98366947 98367212 -51149825 - B4 SINE B4 -16 276 9 5 1335 27 49 0 0 chr6 98367305 98367346 -51149691 + AT_rich Low_complexity Low_complexity 1 41 0 5 1335 999 305 108 20 chr6 98367346 98367838 -51149199 - Lx8 LINE L1 -3 7470 6936 5 1335 291 175 0 0 chr6 98367884 98367941 -51149096 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1335 198 0 0 0 chr6 98368896 98368918 -51148119 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1335 213 254 36 0 chr6 98369863 98369918 -51147119 + ID4 SINE ID 20 76 -7 5 1335 497 229 125 53 chr6 98370756 98370908 -51146129 - RSINE1 SINE B4 0 165 3 5 1335 504 347 12 0 chr6 98372687 98372854 -51144183 + MER58A DNA MER1_type 54 222 -2 5 1335 21 0 0 0 chr6 98373262 98373283 -51143754 + AT_rich Low_complexity Low_complexity 1 21 0 5 1335 398 384 62 33 chr6 98373628 98374051 -51142986 + L1MEc LINE L1 38 472 -5928 5 1335 254 303 117 32 chr6 98374391 98374674 -51142363 + L1MEc LINE L1 1019 1325 -5075 5 1335 227 170 19 0 chr6 98375022 98375075 -51141962 + L1MEc LINE L1 1495 1548 -4852 5 1335 256 139 0 0 chr6 98375916 98375959 -51141078 - Lx4B LINE L1 -1275 5783 5741 5 1335 597 302 133 19 chr6 98375964 98376176 -51140861 + Lx9 LINE L1 7215 7431 -213 5 1335 453 81 0 0 chr6 98376176 98376238 -51140799 + (CATA)n Simple_repeat Simple_repeat 1 62 0 5 1335 597 302 133 19 chr6 98376238 98376393 -51140644 + Lx9 LINE L1 7432 7624 -20 5 1335 2347 45 3 0 chr6 98376601 98376893 -51140144 + L1Md_A LINE L1 6289 6581 -1 5 1335 23 0 0 0 chr6 98377689 98377712 -51139325 + AT_rich Low_complexity Low_complexity 1 23 0 5 1335 276 294 129 0 chr6 98377712 98377797 -51139240 - ID_B1 SINE B4 -31 193 98 5 1335 636 333 35 11 chr6 98377860 98378145 -51138892 + B4A SINE B4 1 292 0 5 1335 480 299 15 0 chr6 98378211 98378348 -51138689 + B1F1 SINE Alu 1 139 -10 5 1335 765 226 61 17 chr6 98378564 98378744 -51138293 + B3 SINE B2 2 189 -27 5 1335 207 0 0 0 chr6 98379036 98379059 -51137978 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1335 355 309 9 9 chr6 98380437 98380545 -51136492 - PB1D10 SINE Alu -7 110 3 5 1335 22 0 0 0 chr6 98381787 98381809 -51135228 + AT_rich Low_complexity Low_complexity 1 22 0 5 1335 264 296 6 102 chr6 98381860 98381987 -51135050 + MIRc SINE MIR 81 199 -69 5 1335 199 353 15 0 chr6 98382037 98382105 -51134932 + MIR SINE MIR 85 153 -55 5 1335 462 329 0 0 chr6 98382181 98382336 -51134701 + (TG)n Simple_repeat Simple_repeat 1 155 0 5 1335 660 250 53 0 chr6 98382347 98382479 -51134558 + RSINE1 SINE B4 7 145 -20 5 1335 441 54 0 0 chr6 98382480 98382536 -51134501 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1335 21 0 0 0 chr6 98383029 98383050 -51133987 + AT_rich Low_complexity Low_complexity 1 21 0 5 1335 263 262 35 97 chr6 98384482 98384596 -51132441 - PB1 SINE Alu -19 108 2 5 1335 423 0 0 0 chr6 98385252 98385299 -51131738 + (TCTCCC)n Simple_repeat Simple_repeat 1 47 0 6 1335 285 29 0 0 chr6 98385338 98385372 -51131665 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1335 281 318 182 0 chr6 98385743 98385891 -51131146 + LTR16A1 LTR ERVL 43 217 -239 6 1335 21 0 0 0 chr6 98386088 98386109 -51130928 + AT_rich Low_complexity Low_complexity 1 21 0 6 1335 360 368 35 0 chr6 98386243 98386414 -51130623 - Lx8 LINE L1 -122 7351 7175 6 1335 21 0 0 0 chr6 98386817 98386838 -51130199 + AT_rich Low_complexity Low_complexity 1 21 0 6 1335 213 125 34 51 chr6 98387092 98387151 -51129886 + A-rich Low_complexity Low_complexity 2 59 0 6 1335 588 65 0 0 chr6 98388149 98388226 -51128811 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1335 36 40 0 0 chr6 98388458 98388508 -51128529 + AT_rich Low_complexity Low_complexity 1 50 0 6 1335 27 0 0 0 chr6 98388744 98388771 -51128266 + AT_rich Low_complexity Low_complexity 1 27 0 6 1335 21 36 0 0 chr6 98389066 98389094 -51127943 + AT_rich Low_complexity Low_complexity 1 28 0 6 1335 320 314 163 5 chr6 98389825 98390046 -51126991 + LTR37A LTR ERV1 149 404 -22 6 1335 331 274 14 0 chr6 98390411 98390484 -51126553 - PB1D10 SINE Alu -9 108 35 6 1335 210 71 0 0 chr6 98392663 98392691 -51124346 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 6 1335 25 0 0 0 chr6 98393050 98393075 -51123962 + AT_rich Low_complexity Low_complexity 1 25 0 6 1335 790 291 16 0 chr6 98393088 98393342 -51123695 + Lx9 LINE L1 7204 7461 -183 6 1335 429 95 0 0 chr6 98393354 98393417 -51123620 + (TATG)n Simple_repeat Simple_repeat 2 64 0 6 1335 1709 94 0 0 chr6 98393565 98393798 -51123239 + L1Md_F2 LINE L1 6348 6580 -2 6 1335 230 290 120 28 chr6 98394301 98394443 -51122594 - L1ME2 LINE L1 -131 6033 5879 6 1335 407 254 47 5 chr6 98394770 98394921 -51122116 - L1MA4A LINE L1 -221 5943 5790 6 1335 273 299 65 18 chr6 98394992 98395162 -51121875 - L1MA4A LINE L1 -641 5659 5482 6 1335 222 116 0 0 chr6 98395255 98395298 -51121739 + (TTGG)n Simple_repeat Simple_repeat 4 46 0 6 1335 857 156 85 25 chr6 98395315 98395528 -51121509 + Lx4A LINE L1 6811 7056 -2 6 1335 389 313 68 94 chr6 98395553 98396336 -51120701 - L1MA4A LINE L1 -793 5350 4589 6 1335 216 333 12 12 chr6 98396484 98396569 -51120468 - B2_Mm2 SINE B2 -110 85 1 6 1335 375 23 0 0 chr6 98396955 98396999 -51120038 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1335 1973 152 103 53 chr6 98398352 98398688 -51118349 + RMER4A LTR ERVK 1 345 -121 6 1335 378 0 0 0 chr6 98398688 98398730 -51118307 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1335 1973 152 103 53 chr6 98398730 98398830 -51118207 + RMER4A LTR ERVK 346 458 -8 6 1335 552 189 253 11 chr6 98398861 98399043 -51117994 - URR1A DNA MER1_type 0 226 1 6 1335 333 89 0 0 chr6 98399171 98399216 -51117821 + L1Md_F2 LINE L1 5542 5586 -297 6 1335 8560 29 0 0 chr6 98399216 98400198 -51116839 + L1Md_F2 LINE L1 5587 6568 -14 6 1335 701 226 14 0 chr6 98400288 98400434 -51116603 + B1_Mur1 SINE Alu 1 148 -1 6 1335 378 324 103 0 chr6 98401395 98401540 -51115497 + ID_B1 SINE B4 1 160 -64 6 1335 324 230 15 31 chr6 98402873 98403003 -51114034 + GA-rich Low_complexity Low_complexity 3 130 0 6 1335 805 222 62 48 chr6 98403036 98403244 -51113793 + B3 SINE B2 2 212 -4 6 1335 2281 102 35 14 chr6 98404099 98404446 -51112591 + Lx3_Mus LINE L1 6638 6991 -18 6 1335 288 0 0 0 chr6 98404450 98404482 -51112555 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 6 1335 216 0 0 0 chr6 98404708 98404732 -51112305 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1335 348 392 8 8 chr6 98405822 98405953 -51111084 + L2b LINE L2 3245 3375 0 6 1335 10972 132 43 21 chr6 98406271 98407583 -51109454 + L1_Mur2 LINE L1 704 2005 -3872 6 1335 471 35 0 0 chr6 98407583 98407640 -51109397 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 6 1335 10972 119 62 7 chr6 98407640 98407677 -51109360 + L1_Mur2 LINE L1 2006 2058 -3819 6 1335 243 0 0 0 chr6 98407677 98407704 -51109333 + (CCA)n Simple_repeat Simple_repeat 3 29 0 6 1335 10972 119 62 7 chr6 98407704 98408843 -51108194 + L1_Mur2 LINE L1 2059 3277 -2600 6 1335 12330 125 25 26 chr6 98408846 98410229 -51106808 + L1VL4 LINE L1 227 1659 -1900 6 1335 975 102 0 45 chr6 98410229 98410383 -51106654 + B1_Mus1 SINE Alu 1 147 -1 6 1335 12330 93 41 25 chr6 98410383 98410395 -51106642 + L1VL4 LINE L1 1660 1660 -1899 6 1335 1200 111 0 0 chr6 98410395 98410575 -51106462 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1335 1012 50 28 0 chr6 98410576 98410717 -51106320 + (GGAAA)n Simple_repeat Simple_repeat 4 148 0 6 1335 12330 93 41 25 chr6 98410717 98412050 -51104987 + L1VL4 LINE L1 1660 2974 -585 6 1335 2308 141 10 0 chr6 98412038 98412441 -51104596 + L1_Mur2 LINE L1 4112 4518 -1359 6 1335 963 42 0 0 chr6 98412442 98412561 -51104476 + B1_Mus2 SINE Alu 17 135 -12 6 1335 468 51 0 0 chr6 98412562 98412621 -51104416 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 6 1335 743 42 0 0 chr6 98412621 98412717 -51104320 + L1_Mm LINE L1 4522 4617 -1266 6 1335 1299 142 18 9 chr6 98412714 98412942 -51104095 + Lx LINE L1 6140 6369 -285 6 1335 7819 135 38 8 chr6 98412922 98414251 -51102786 + Lx4A LINE L1 5690 7058 0 6 1335 1159 51 0 0 chr6 98415852 98415990 -51101047 + B1_Mus1 SINE Alu 1 138 -10 6 1335 315 49 0 0 chr6 98415990 98416031 -51101006 + (GGA)n Simple_repeat Simple_repeat 3 43 0 6 1335 471 60 0 0 chr6 98416212 98416279 -51100758 + (GTTTG)n Simple_repeat Simple_repeat 2 68 0 6 1335 974 84 30 8 chr6 98416280 98416412 -51100625 - B1_Mus1 SINE Alu -12 136 2 6 1335 204 292 0 0 chr6 98417301 98417349 -51099688 + CT-rich Low_complexity Low_complexity 2 49 0 6 1335 1781 69 8 16 chr6 98417934 98418184 -51098853 - L1_Mus1 LINE L1 0 6567 6320 6 1335 253 343 144 6 chr6 98418371 98418538 -51098499 - MamRep605 Unknown Unknown -215 661 472 6 1335 378 341 65 22 chr6 98419603 98419834 -51097203 + LTR16A1 LTR ERVL 188 428 -28 6 1335 450 0 0 0 chr6 98420064 98420114 -51096923 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1335 644 94 9 0 chr6 98420122 98420228 -51096809 + (GA)n Simple_repeat Simple_repeat 2 108 0 6 1335 590 312 75 57 chr6 98420228 98420493 -51096544 - B4A SINE B4 -22 270 1 6 1335 381 264 65 61 chr6 98421318 98421532 -51095505 + MER58C DNA MER1_type 1 215 0 6 1335 393 138 11 0 chr6 98423536 98423623 -51093414 - L1Md_A LINE L1 -2 6580 6493 6 1335 1463 44 0 0 chr6 98423623 98423826 -51093211 + L1_Mm LINE L1 1445 1647 -4236 6 1335 459 35 0 0 chr6 98424104 98424161 -51092876 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1335 240 312 0 0 chr6 98424162 98424226 -51092811 + MER103 DNA DNA 86 149 -17 6 1335 588 292 77 21 chr6 98424780 98425119 -51091918 - L1MA5 LINE L1 -23 6277 5920 6 1335 441 0 0 0 chr6 98426376 98426425 -51090612 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1335 479 287 7 22 chr6 98427230 98427369 -51089668 - B1F SINE Alu -10 139 3 6 1335 405 281 12 42 chr6 98427542 98427709 -51089328 + GA-rich Low_complexity Low_complexity 2 163 0 6 1335 237 303 15 0 chr6 98427710 98427776 -51089261 + MIRc SINE MIR 70 136 -132 6 1335 216 274 97 0 chr6 98428346 98428408 -51088629 + ID SINE ID 3 70 -154 6 1335 287 268 101 47 chr6 98429392 98429521 -51087516 + MER5A1 DNA MER1_type 28 163 -3 6 1335 1179 264 98 24 chr6 98429612 98429989 -51087048 - MTD LTR MaLR -14 405 1 6 1335 243 339 81 18 chr6 98430156 98430267 -51086770 - ORR1E LTR MaLR -221 138 21 6 1335 454 318 24 48 chr6 98432386 98432594 -51084443 + ID_B1 SINE B4 19 221 -3 6 1335 207 0 0 0 chr6 98434163 98434186 -51082851 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1335 477 0 0 0 chr6 98434264 98434317 -51082720 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1335 343 274 27 73 chr6 98434320 98434430 -51082607 - ID_B1 SINE B4 -3 221 117 6 1336 198 308 249 6 chr6 98436518 98436691 -51080346 + MIR SINE MIR 16 230 -32 6 1336 25 0 0 0 chr6 98437876 98437901 -51079136 + AT_rich Low_complexity Low_complexity 1 25 0 6 1336 28 29 0 0 chr6 98438429 98438464 -51078573 + AT_rich Low_complexity Low_complexity 1 35 0 6 1336 360 43 0 0 chr6 98438565 98438611 -51078426 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1336 532 312 12 38 chr6 98438953 98439113 -51077924 - RSINE1 SINE B4 -2 163 8 6 1336 319 43 0 21 chr6 98439423 98439471 -51077566 + Lx2 LINE L1 6944 6990 -7 6 1336 477 0 0 0 chr6 98442080 98442133 -51074904 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1336 345 24 0 0 chr6 98442133 98442174 -51074863 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1336 419 345 53 99 chr6 98443428 98443750 -51073287 - ORR1E LTR MaLR -52 307 1 6 1336 327 114 57 0 chr6 98444166 98444236 -51072801 + CT-rich Low_complexity Low_complexity 2 75 0 6 1336 421 210 6 33 chr6 98444322 98444504 -51072533 + CT-rich Low_complexity Low_complexity 3 179 0 6 1336 485 271 139 81 chr6 98444957 98445230 -51071807 - B4 SINE B4 -1 291 3 6 1336 291 28 0 0 chr6 98445807 98445843 -51071194 + (TTG)n Simple_repeat Simple_repeat 2 37 0 6 1336 228 315 15 14 chr6 98446675 98446713 -51070324 + ID_B1 SINE B4 61 122 -102 6 1336 250 209 0 0 chr6 98446713 98446756 -51070281 + B1F2 SINE Alu 12 54 -95 6 1336 228 315 15 14 chr6 98446756 98446774 -51070263 + ID_B1 SINE B4 123 154 -70 6 1336 23 86 0 0 chr6 98447005 98447063 -51069974 + AT_rich Low_complexity Low_complexity 1 58 0 6 1336 394 351 19 33 chr6 98448512 98448727 -51068310 + Lx8 LINE L1 6988 7199 -274 6 1336 1308 173 27 0 chr6 98448778 98448998 -51068039 + URR1A DNA MER1_type 1 226 0 6 1336 342 351 116 72 chr6 98450239 98450462 -51066575 + Lx8 LINE L1 7094 7311 -162 6 1336 1160 110 0 0 chr6 98450462 98450608 -51066429 - B1_Mus2 SINE Alu 0 147 2 6 1336 342 351 116 72 chr6 98450608 98450746 -51066291 + Lx8 LINE L1 7312 7471 -2 6 1336 393 75 0 0 chr6 98450758 98450811 -51066226 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1336 870 284 90 19 chr6 98451757 98452023 -51065014 - B4A SINE B4 -7 285 1 6 1336 6956 82 37 1 chr6 98453133 98454078 -51062959 - Lx LINE L1 0 6654 5676 6 1336 189 337 47 0 chr6 98454197 98454283 -51062754 - MIR SINE MIR -95 167 78 7 1336 180 0 0 0 chr6 98454385 98454405 -51062632 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1336 258 32 0 0 chr6 98454848 98454879 -51062158 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1336 22 0 0 0 chr6 98454979 98455001 -51062036 + AT_rich Low_complexity Low_complexity 1 22 0 7 1336 333 0 0 0 chr6 98456329 98456366 -51060671 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1336 216 0 0 0 chr6 98456850 98456874 -51060163 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1336 804 267 97 46 chr6 98456876 98457135 -51059902 - B4A SINE B4 -20 272 1 7 1336 284 289 78 34 chr6 98457191 98457370 -51059667 - L1ME4a LINE L1 -4 6120 5934 7 1336 2182 106 23 10 chr6 98457562 98457867 -51059170 + RLTR27 LTR ERVK 1 309 0 7 1336 214 312 0 30 chr6 98457991 98458057 -51058980 + ID4 SINE ID 17 80 -3 7 1336 21 0 0 0 chr6 98460820 98460841 -51056196 + AT_rich Low_complexity Low_complexity 1 21 0 7 1336 373 301 100 37 chr6 98461053 98461353 -51055684 + L1MA8 LINE L1 5972 6290 -1 7 1336 347 113 14 0 chr6 98461410 98461481 -51055556 + (TCTG)n Simple_repeat Simple_repeat 3 74 0 7 1336 618 246 72 131 chr6 98461794 98462110 -51054927 + MER102a DNA MER1_type 14 299 -31 7 1336 1563 173 11 4 chr6 98462405 98462672 -51054365 + Lx2B LINE L1 6724 6992 -8 7 1336 567 0 0 0 chr6 98462911 98462974 -51054063 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1336 1473 0 17 0 chr6 98463879 98464056 -51052981 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1336 452 276 97 83 chr6 98465363 98465580 -51051457 - Charlie8 DNA MER1_type -2207 221 2 7 1336 21 0 0 0 chr6 98465615 98465636 -51051401 + AT_rich Low_complexity Low_complexity 1 21 0 7 1336 620 264 136 42 chr6 98465636 98465901 -51051136 + B4A SINE B4 1 290 -2 7 1336 226 320 0 99 chr6 98466568 98466679 -51050358 - PB1D10 SINE Alu -16 101 2 7 1336 504 0 0 0 chr6 98466820 98466876 -51050161 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1336 668 45 0 11 chr6 98468400 98468489 -51048548 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 7 1336 322 295 99 57 chr6 98469953 98470165 -51046872 - MLT2B1 LTR ERVL -11 556 331 7 1336 294 29 0 0 chr6 98470235 98470270 -51046767 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1336 353 287 8 16 chr6 98472595 98472849 -51044188 + GA-rich Low_complexity Low_complexity 1 251 0 7 1336 492 18 0 0 chr6 98473063 98473120 -51043917 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1336 313 273 0 13 chr6 98473764 98473842 -51043195 + MIRc SINE MIR 83 159 -109 7 1336 207 0 0 0 chr6 98474947 98474970 -51042067 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 7 1336 374 0 22 0 chr6 98475770 98475816 -51041221 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1336 212 200 15 44 chr6 98477486 98477554 -51039483 + T-rich Low_complexity Low_complexity 2 67 0 7 1336 239 332 120 51 chr6 98478377 98478593 -51038444 + Charlie8 DNA MER1_type 33 263 -2165 7 1336 900 288 75 8 chr6 98478749 98478895 -51038142 - B4 SINE B4 -6 286 126 7 1336 212 0 36 0 chr6 98478895 98478923 -51038114 + (CCCCCA)n Simple_repeat Simple_repeat 5 33 0 7 1336 900 288 75 8 chr6 98478923 98479042 -51037995 - B4 SINE B4 -167 125 3 7 1336 461 331 78 5 chr6 98482780 98482907 -51034130 + MER3 DNA MER1_type 5 130 -79 7 1336 2009 178 150 3 chr6 98482907 98483273 -51033764 + MTC LTR MaLR 2 421 0 7 1336 461 331 78 5 chr6 98483273 98483336 -51033701 + MER3 DNA MER1_type 131 208 -1 7 1336 31 26 0 0 chr6 98483456 98483494 -51033543 + AT_rich Low_complexity Low_complexity 1 38 0 7 1336 462 362 72 17 chr6 98483557 98483737 -51033300 + B3A SINE B2 1 190 -8 7 1336 216 0 0 0 chr6 98484339 98484363 -51032674 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1336 468 0 0 0 chr6 98484363 98484414 -51032623 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 1336 21 36 0 0 chr6 98484770 98484798 -51032239 + AT_rich Low_complexity Low_complexity 1 28 0 7 1336 786 75 0 0 chr6 98485596 98485702 -51031335 + (GAAAA)n Simple_repeat Simple_repeat 2 107 0 7 1336 382 296 58 104 chr6 98487174 98487415 -51029622 + MTEb LTR MaLR 61 290 -89 7 1336 462 199 25 47 chr6 98487392 98487534 -51029503 + ORR1E LTR MaLR 234 370 0 7 1336 335 362 85 20 chr6 98487894 98488187 -51028850 - L1MEd LINE L1 -4957 1268 957 7 1336 415 179 53 0 chr6 98488283 98488378 -51028659 - L1ME3A LINE L1 -7 6166 6067 7 1336 742 270 28 19 chr6 98488368 98488583 -51028454 - L1M5 LINE L1 -444 5729 5513 7 1336 370 114 29 0 chr6 98488667 98488737 -51028300 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 7 1336 376 299 18 18 chr6 98488934 98489043 -51027994 - L1MEd LINE L1 -5456 663 555 7 1336 452 86 0 14 chr6 98489439 98489510 -51027527 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1336 497 316 36 40 chr6 98489563 98489787 -51027250 + Charlie1 DNA MER1_type 1 223 -2558 7 1336 279 322 16 16 chr6 98489797 98489920 -51027117 + Charlie1 DNA MER1_type 2658 2780 -1 7 1336 862 258 80 63 chr6 98490276 98490562 -51026475 + B4 SINE B4 2 292 0 7 1336 956 322 78 20 chr6 98490871 98491270 -51025767 + MLT1H2 LTR MaLR 43 464 -25 7 1336 21 0 0 0 chr6 98491535 98491556 -51025481 + AT_rich Low_complexity Low_complexity 1 21 0 7 1336 21 36 0 0 chr6 98492695 98492723 -51024314 + AT_rich Low_complexity Low_complexity 1 28 0 7 1336 1571 40 0 0 chr6 98493438 98493612 -51023425 - B2_Mm1t SINE B2 -19 174 1 7 1336 1180 88 7 0 chr6 98494485 98494632 -51022405 + B1_Mus1 SINE Alu 1 148 0 7 1336 3654 40 0 0 chr6 98494727 98495155 -51021882 - L1_Mm LINE L1 -129 5754 5327 7 1336 4713 31 0 2 chr6 98495155 98495674 -51021363 + L1Md_F3 LINE L1 6066 6583 -1 7 1336 1358 259 62 11 chr6 98496802 98497157 -51019880 - MTEa LTR MaLR -6 373 1 7 1336 2497 205 224 30 chr6 98497825 98498558 -51018479 + Lx7 LINE L1 6814 7688 -8 7 1336 1032 295 8 11 chr6 98498910 98499171 -51017866 + B4 SINE B4 1 260 -32 7 1336 483 18 0 0 chr6 98499176 98499232 -51017805 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1336 385 351 57 32 chr6 98499624 98499871 -51017166 + L3b LINE CR1 216 468 -14 7 1336 409 283 0 0 chr6 98500280 98500379 -51016658 - MER58B DNA MER1_type 0 341 243 1 1336 209 312 50 0 chr6 98500500 98500580 -51016457 - MIR SINE MIR -109 153 70 2 1336 370 294 130 50 chr6 98500779 98500940 -51016097 + MLT1M LTR MaLR 113 286 -386 3 1336 459 0 0 0 chr6 98500990 98501041 -51015996 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1336 736 352 17 17 chr6 98501051 98501288 -51015749 + B4A SINE B4 35 271 -21 5 1336 183 156 0 0 chr6 98501354 98501386 -51015651 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1336 207 385 66 0 chr6 98502364 98502455 -51014582 - MIR SINE MIR -58 150 54 7 1336 687 298 74 67 chr6 98503232 98503516 -51013521 - B4A SINE B4 0 292 7 8 1336 278 301 35 9 chr6 98504055 98504169 -51012868 - MER20 DNA MER1_type 0 219 103 9 1336 417 229 133 0 chr6 98504469 98504574 -51012463 - MLT2D LTR ERVL -55 505 387 1 1336 501 261 27 59 chr6 98504763 98504983 -51012054 - L1MB3 LINE L1 -343 5840 5628 1 1336 655 267 24 0 chr6 98505073 98505238 -51011799 + B4 SINE B4 3 171 -121 1 1336 552 68 0 0 chr6 98505312 98505385 -51011652 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1336 1386 173 0 0 chr6 98507146 98507372 -51009665 - URR1A DNA MER1_type 0 226 1 1 1336 1439 235 50 14 chr6 98507661 98508023 -51009014 + MTEa LTR MaLR 3 377 -2 1 1336 456 35 0 0 chr6 98508674 98508732 -51008305 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1336 420 20 0 0 chr6 98508732 98508780 -51008257 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1336 321 68 0 0 chr6 98508787 98508831 -51008206 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1336 475 262 164 11 chr6 98509512 98509701 -51007336 + MER58A DNA MER1_type 4 221 -3 1 1336 726 314 6 0 chr6 98509945 98510120 -51006917 + B3A SINE B2 1 176 -22 2 1336 219 69 0 0 chr6 98510137 98510166 -51006871 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1336 321 26 0 0 chr6 98510178 98510216 -51006821 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1336 213 65 0 0 chr6 98510952 98510983 -51006054 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1336 255 103 0 0 chr6 98511831 98511870 -51005167 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1336 588 156 23 0 chr6 98512020 98512148 -51004889 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 2 1336 231 383 11 11 chr6 98512596 98512703 -51004334 - MIR3 SINE MIR -162 114 3 2 1336 324 82 40 14 chr6 98512763 98512837 -51004200 + (TTTTG)n Simple_repeat Simple_repeat 4 79 0 2 1336 24 32 0 0 chr6 98514008 98514039 -51002998 + AT_rich Low_complexity Low_complexity 1 31 0 2 1336 262 140 17 50 chr6 98514170 98514230 -51002807 - ID_B1 SINE B4 0 224 167 2 1336 279 214 10 15 chr6 98514230 98514256 -51002781 - PB1D10 SINE Alu 0 117 70 3 1336 2604 47 0 3 chr6 98514296 98514614 -51002423 + L1_Mus1 LINE L1 6250 6566 -1 3 1336 1107 183 19 28 chr6 98515404 98515618 -51001419 + URR1B DNA MER1_type 14 225 0 3 1336 191 36 0 35 chr6 98516660 98516689 -51000348 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 1336 22 35 0 0 chr6 98516840 98516869 -51000168 + AT_rich Low_complexity Low_complexity 1 29 0 3 1336 1005 288 5 9 chr6 98518920 98519005 -50998032 + B4A SINE B4 1 84 -208 3 1336 310 314 20 85 chr6 98519005 98519158 -50997879 + B1F2 SINE Alu 1 143 -6 3 1336 270 116 0 0 chr6 98519174 98519217 -50997820 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1336 535 254 79 14 chr6 98519556 98519696 -50997341 - RSINE1 SINE B4 -16 149 1 3 1336 2551 212 2 6 chr6 98520673 98521157 -50995880 + Lx5 LINE L1 6493 6974 -76 3 1336 28 0 0 0 chr6 98521178 98521206 -50995831 + AT_rich Low_complexity Low_complexity 1 28 0 4 1336 419 343 15 2 chr6 98521623 98521774 -50995263 + MIR SINE MIR 3 153 -55 4 1336 259 304 71 0 chr6 98521806 98521918 -50995119 - Charlie15a DNA MER1_type -13 211 92 4 1336 477 310 65 32 chr6 98522761 98523008 -50994029 - L1MEg LINE L1 -5044 1040 786 4 1336 3128 143 10 8 chr6 98524106 98524626 -50992411 + RLTR28 LTR ERVL 1 521 -3 4 1336 2604 192 25 41 chr6 98524995 98525553 -50991484 - RMER15 LTR ERVL 0 575 27 4 1336 234 0 0 0 chr6 98525574 98525600 -50991437 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 4 1336 2040 146 165 25 chr6 98526062 98526469 -50990568 + RLTR28B LTR ERVL 1 464 -17 4 1336 265 218 25 37 chr6 98527896 98527977 -50989060 + MER20 DNA MER1_type 1 80 -139 4 1336 230 306 0 31 chr6 98528384 98528448 -50988589 + MIRb SINE MIR 26 87 -181 4 1336 426 20 0 0 chr6 98529203 98529254 -50987783 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1336 22 35 0 0 chr6 98529386 98529415 -50987622 + AT_rich Low_complexity Low_complexity 1 29 0 5 1336 198 0 0 0 chr6 98530632 98530654 -50986383 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 5 1336 462 316 70 113 chr6 98530666 98530966 -50986071 - B4 SINE B4 0 292 6 5 1336 234 188 21 0 chr6 98531150 98531198 -50985839 + (TTG)n Simple_repeat Simple_repeat 2 50 0 5 1336 348 264 0 0 chr6 98532277 98532402 -50984635 + (CA)n Simple_repeat Simple_repeat 1 125 0 5 1336 215 256 7 7 chr6 98533271 98533358 -50983679 + A-rich Low_complexity Low_complexity 1 87 0 5 1336 210 71 0 0 chr6 98533594 98533622 -50983415 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1336 1576 161 67 81 chr6 98534635 98535006 -50982031 + ORR1B2 LTR MaLR 2 367 0 5 1336 530 285 6 94 chr6 98535204 98535363 -50981674 - RSINE1 SINE B4 0 165 21 5 1336 1159 62 12 0 chr6 98537390 98537550 -50979487 + L1Md_T LINE L1 6421 6582 0 6 1336 338 295 102 51 chr6 98538209 98538366 -50978671 + MLT1A0 LTR MaLR 165 329 -36 6 1336 27 29 0 0 chr6 98538571 98538605 -50978432 + AT_rich Low_complexity Low_complexity 1 34 0 6 1336 354 301 11 109 chr6 98540356 98540531 -50976506 + B4A SINE B4 1 158 -134 6 1336 201 39 0 0 chr6 98540609 98540635 -50976402 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1336 281 312 0 0 chr6 98540943 98541020 -50976017 + ID4 SINE ID 3 79 -4 6 1336 285 109 0 0 chr6 98542264 98542310 -50974727 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 6 1336 308 326 95 52 chr6 98542664 98542916 -50974121 - L1MEd LINE L1 -5267 852 590 6 1336 581 305 24 12 chr6 98543043 98543212 -50973825 + RMER30 DNA MER1_type 13 183 -19 6 1336 1155 82 56 45 chr6 98543446 98543625 -50973412 + B2_Mm2 SINE B2 1 181 -14 6 1336 1029 148 17 3 chr6 98543730 98543901 -50973136 - ORR1B2 LTR MaLR -2 365 166 7 1336 327 104 0 0 chr6 98543901 98543949 -50973088 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1336 801 251 54 27 chr6 98543949 98543998 -50973039 - ORR1B2 LTR MaLR -181 165 118 7 1336 579 116 0 0 chr6 98544911 98545023 -50972014 + (TG)n Simple_repeat Simple_repeat 2 113 0 7 1336 1163 62 7 0 chr6 98545344 98545490 -50971547 + B1_Mm SINE Alu 1 147 0 7 1336 243 175 0 0 chr6 98545492 98545549 -50971488 + A-rich Low_complexity Low_complexity 1 57 0 7 1336 211 322 157 44 chr6 98545802 98545961 -50971076 - MIRb SINE MIR -78 190 14 7 1336 275 406 38 16 chr6 98546671 98546854 -50970183 - MER102a DNA MER1_type -1 329 143 7 1336 226 227 0 15 chr6 98546886 98546953 -50970084 + GA-rich Low_complexity Low_complexity 3 68 0 7 1336 386 54 36 0 chr6 98546955 98547011 -50970026 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 7 1336 414 0 0 0 chr6 98548111 98548157 -50968880 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1336 516 303 102 24 chr6 98548399 98548849 -50968188 - L1MB7 LINE L1 -14 6170 5686 8 1336 891 250 14 49 chr6 98549180 98549403 -50967634 - B3 SINE B2 -1 215 1 8 1336 2825 236 34 172 chr6 98549754 98550867 -50966170 - L1_Mur3 LINE L1 -15 5862 4858 8 1336 207 0 0 0 chr6 98550867 98550890 -50966147 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1336 2825 195 25 179 chr6 98550890 98551131 -50965906 - L1_Mur3 LINE L1 -1023 4857 4625 8 1336 402 21 0 0 chr6 98551131 98551178 -50965859 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1336 366 23 0 0 chr6 98551178 98551220 -50965817 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1336 2825 195 25 179 chr6 98551220 98551301 -50965736 - L1_Mur3 LINE L1 -1256 4624 4561 8 1336 312 27 0 0 chr6 98551301 98551338 -50965699 + (TTGG)n Simple_repeat Simple_repeat 3 39 0 8 1336 2825 195 25 179 chr6 98551338 98551863 -50965174 - L1_Mur3 LINE L1 -1320 4560 4164 8 1336 637 164 205 107 chr6 98551870 98552075 -50964962 + URR1A DNA MER1_type 2 226 0 8 1336 546 138 15 25 chr6 98552135 98552238 -50964799 + ORR1D2 LTR MaLR 1 98 -261 8 1336 1121 79 40 0 chr6 98552238 98552390 -50964647 + B2_Mm2 SINE B2 1 158 -37 8 1336 294 29 0 0 chr6 98552391 98552426 -50964611 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 9 1336 916 269 75 30 chr6 98552448 98552713 -50964324 + ORR1D2 LTR MaLR 94 370 0 8 1336 3564 259 71 58 chr6 98552713 98552764 -50964273 + ORR1D2-int LTR MaLR 1 49 -1321 8 1336 306 0 0 0 chr6 98552764 98552798 -50964239 + (TTG)n Simple_repeat Simple_repeat 2 35 0 9 1336 3564 259 71 58 chr6 98552798 98554098 -50962939 + ORR1D2-int LTR MaLR 50 1370 0 8 1336 1474 211 51 59 chr6 98554098 98554471 -50962566 + ORR1D2 LTR MaLR 1 370 0 8 1336 372 43 0 0 chr6 98554969 98555015 -50962022 + (CATA)n Simple_repeat Simple_repeat 2 47 0 9 1336 515 16 16 0 chr6 98555387 98555451 -50961586 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 9 1336 233 311 103 7 chr6 98555475 98555611 -50961426 - MamRep4096 DNA hAT? -270 156 8 9 1336 853 246 11 0 chr6 98557847 98558022 -50959015 - B3A SINE B2 -19 179 3 9 1336 327 397 13 7 chr6 98558170 98558322 -50958715 - MLT1J LTR MaLR -260 252 100 9 1336 30 0 0 0 chr6 98561505 98561535 -50955502 + AT_rich Low_complexity Low_complexity 1 30 0 9 1336 249 330 76 0 chr6 98561561 98561679 -50955358 + L1MA8 LINE L1 5174 5300 -843 9 1336 367 282 94 61 chr6 98561844 98562025 -50955012 - Lx8 LINE L1 -1 7472 7286 9 1336 273 287 18 53 chr6 98562032 98562146 -50954891 + L1MA8 LINE L1 5329 5438 -742 9 1336 992 305 87 24 chr6 98562192 98562968 -50954069 + L1MA8 LINE L1 5429 6284 -7 9 1336 931 333 32 28 chr6 98564528 98564812 -50952225 - B4A SINE B4 0 292 8 1 1336 301 284 87 7 chr6 98565406 98565555 -50951482 - L1MA9 LINE L1 -2 6310 6150 1 1336 276 30 0 0 chr6 98565592 98565625 -50951412 + (TATG)n Simple_repeat Simple_repeat 2 34 0 1 20 530 319 203 40 chr6 98565950 98566636 -50950401 - ERVL-int LTR ERVL -67 5647 4850 1 1337 2061 292 98 36 chr6 98566660 98567598 -50949439 - ERVL-int LTR ERVL -849 4908 3913 1 1337 219 69 0 0 chr6 98567834 98567863 -50949174 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1337 351 253 0 11 chr6 98568069 98568161 -50948876 - L1M3 LINE L1 -938 5202 5112 1 1337 252 130 0 0 chr6 98568161 98568207 -50948830 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 1 1337 206 308 114 13 chr6 98568544 98568623 -50948414 - MIR SINE MIR -110 152 66 1 1337 805 325 0 0 chr6 98568651 98568842 -50948195 + B3 SINE B2 9 199 -17 1 1337 789 278 35 5 chr6 98569041 98569240 -50947797 + B3 SINE B2 1 205 -11 1 1337 3341 277 94 25 chr6 98569275 98569652 -50947385 + Lx7 LINE L1 6092 6470 -1226 1 1337 249 33 0 0 chr6 98569652 98569682 -50947355 + (CACCC)n Simple_repeat Simple_repeat 4 33 0 1 1337 3341 277 94 25 chr6 98569682 98570464 -50946573 + Lx7 LINE L1 6471 7330 -366 1 1337 188 114 45 0 chr6 98570473 98570517 -50946520 + T-rich Low_complexity Low_complexity 1 46 0 1 1337 22 35 0 0 chr6 98570652 98570681 -50946356 + AT_rich Low_complexity Low_complexity 1 29 0 1 1337 570 29 0 0 chr6 98572662 98572730 -50944307 + (GGGGA)n Simple_repeat Simple_repeat 3 70 0 1 1337 615 253 27 0 chr6 98572839 98572985 -50944052 + B4A SINE B4 3 152 -140 1 1337 279 316 102 53 chr6 98573971 98574158 -50942879 - LTR78 LTR ERV1 -761 543 348 1 1337 439 333 19 83 chr6 98574688 98574845 -50942192 - B4A SINE B4 -143 149 3 1 1337 22 35 0 0 chr6 98577185 98577214 -50939823 + AT_rich Low_complexity Low_complexity 1 29 0 1 1337 242 128 0 41 chr6 98578440 98578489 -50938548 + GA-rich Low_complexity Low_complexity 1 47 0 1 1337 4355 60 2 2 chr6 98578581 98579100 -50937937 - L1Md_F2 LINE L1 0 6582 6064 1 1337 21 0 0 0 chr6 98579494 98579515 -50937522 + AT_rich Low_complexity Low_complexity 1 21 0 1 1337 470 320 71 28 chr6 98579715 98579969 -50937068 + LTR16C LTR ERVL 225 489 0 1 1337 21 0 0 0 chr6 98581336 98581357 -50935680 + AT_rich Low_complexity Low_complexity 1 21 0 1 1337 192 125 0 0 chr6 98583040 98583072 -50933965 + (G)n Simple_repeat Simple_repeat 1 32 0 1 1337 951 285 29 21 chr6 98583995 98584066 -50932971 + B4 SINE B4 9 85 -207 1 1337 198 0 0 0 chr6 98584066 98584088 -50932949 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1 1337 951 285 29 21 chr6 98584088 98584296 -50932741 + B4 SINE B4 86 290 -2 1 1337 602 294 132 23 chr6 98584384 98584642 -50932395 + B4A SINE B4 2 287 -5 1 1337 237 235 142 15 chr6 98584894 98585028 -50932009 - L1MD3 LINE L1 -9 7986 7836 1 1337 262 319 116 66 chr6 98585059 98585180 -50931857 - B1F SINE Alu 0 149 23 1 1337 1207 349 15 15 chr6 98585266 98585668 -50931369 + Tigger7 DNA MER2_type 10 411 -2080 1 1337 310 247 54 0 chr6 98585655 98585748 -50931289 + Tigger7 DNA MER2_type 2225 2322 -169 1 1337 747 308 43 18 chr6 98585832 98586113 -50930924 - B4A SINE B4 -4 288 1 1 1337 337 309 83 35 chr6 98586146 98586290 -50930747 + Tigger7 DNA MER2_type 2335 2485 -6 1 1337 463 302 8 45 chr6 98586519 98586651 -50930386 + RSINE1 SINE B4 27 153 -12 1 1337 232 289 13 0 chr6 98588581 98588657 -50928380 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1337 342 224 11 23 chr6 98589100 98589187 -50927850 - Charlie24 DNA MER1_type 0 2450 2365 1 1337 1115 272 116 3 chr6 98589326 98589672 -50927365 + MLT1B LTR MaLR 2 386 -4 1 1337 1189 64 12 0 chr6 98589768 98589940 -50927097 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 1 1337 622 185 141 37 chr6 98589945 98590080 -50926957 - B1_Mur2 SINE Alu 0 149 1 1 1337 292 346 91 41 chr6 98590503 98590723 -50926314 + MIR SINE MIR 16 246 -16 1 1337 427 248 59 10 chr6 98590917 98591019 -50926018 - RSINE1 SINE B4 -36 129 23 1 1337 423 0 0 0 chr6 98591126 98591173 -50925864 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1 1337 978 24 167 0 chr6 98591183 98591309 -50925728 - B1_Mus2 SINE Alu 0 147 1 1 1337 601 297 0 8 chr6 98591352 98591481 -50925556 - RSINE1 SINE B4 -33 132 5 1 1337 306 0 0 0 chr6 98591497 98591531 -50925506 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1337 306 0 0 0 chr6 98591531 98591564 -50925473 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1337 301 276 142 54 chr6 98592058 98592222 -50924815 + MTD LTR MaLR 18 170 -209 1 1337 455 33 16 0 chr6 98592267 98592328 -50924709 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1337 277 309 51 20 chr6 98592330 98592496 -50924541 + MTD LTR MaLR 243 379 0 1 1337 594 0 0 0 chr6 98592782 98592848 -50924189 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1337 475 283 107 18 chr6 98593431 98593600 -50923437 - B3A SINE B2 -14 184 1 1 1337 1874 239 91 133 chr6 98594001 98594878 -50922159 - RMER1B Other Other -1 1065 226 1 1337 344 77 19 0 chr6 98594878 98594930 -50922107 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 1 1337 1263 48 0 7 chr6 98594930 98595078 -50921959 - B1_Mus2 SINE Alu 0 147 1 1 1337 494 315 39 0 chr6 98595142 98595269 -50921768 - B1F SINE Alu -17 132 1 1 1337 915 220 89 0 chr6 98595612 98595803 -50921234 - RMER1B Other Other -828 238 31 1 1337 25 0 0 0 chr6 98595957 98595982 -50921055 + AT_rich Low_complexity Low_complexity 1 25 0 1 1337 435 275 130 25 chr6 98596270 98596509 -50920528 - Lx8 LINE L1 -309 7164 6901 1 1337 536 255 90 60 chr6 98596518 98596718 -50920319 - Lx7 LINE L1 -1869 5827 5622 1 1337 260 72 0 45 chr6 98598255 98598289 -50918748 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 1 1337 1203 68 0 7 chr6 98598289 98598436 -50918601 - B1_Mm SINE Alu -1 146 1 1 1337 260 72 0 45 chr6 98598436 98598445 -50918592 + (TTTC)n Simple_repeat Simple_repeat 1 9 0 1 1337 273 280 32 36 chr6 98598501 98598601 -50918436 + MTEa LTR MaLR 272 361 -9 1 1337 189 0 0 0 chr6 98598763 98598784 -50918253 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1337 856 239 21 31 chr6 98600290 98600484 -50916553 - B3A SINE B2 -1 197 6 1 1337 334 339 98 31 chr6 98600679 98600996 -50916041 - L1MEc LINE L1 -4943 1457 1120 1 1337 231 125 0 0 chr6 98601089 98601129 -50915908 + (TCC)n Simple_repeat Simple_repeat 2 41 0 1 1337 250 270 94 50 chr6 98601213 98601373 -50915664 - L1MEc LINE L1 -5223 1086 920 1 1337 234 321 24 24 chr6 98601662 98601745 -50915292 + Tigger5 DNA MER2_type 2324 2406 0 1 1337 981 216 54 20 chr6 98602209 98602352 -50914685 + B3 SINE B2 1 139 -77 1 1337 437 50 0 16 chr6 98602352 98602413 -50914624 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1337 981 216 54 20 chr6 98602413 98602472 -50914565 + B3 SINE B2 140 209 -7 1 1337 1141 247 125 26 chr6 98602473 98602582 -50914455 + MTD LTR MaLR 41 158 -261 1 1337 836 186 14 0 chr6 98602582 98602727 -50914310 + B1_Mus1 SINE Alu 2 148 0 1 1337 1141 247 125 26 chr6 98602727 98602962 -50914075 + MTD LTR MaLR 159 418 -1 1 1337 260 296 82 22 chr6 98603012 98603147 -50913890 - MER5A DNA MER1_type -7 182 40 1 1337 4639 118 43 25 chr6 98603481 98604201 -50912836 + Lx LINE L1 5921 6653 -1 1 1337 21 0 0 0 chr6 98604482 98604503 -50912534 + AT_rich Low_complexity Low_complexity 1 21 0 1 1337 14146 78 10 42 chr6 98604763 98607537 -50909500 - L1VL2 LINE L1 -632 2983 297 1 1337 451 300 20 54 chr6 98607549 98607697 -50909340 + B4A SINE B4 150 292 0 1 1337 21 0 0 0 chr6 98607838 98607859 -50909178 + AT_rich Low_complexity Low_complexity 1 21 0 1 1337 622 289 63 32 chr6 98607999 98608314 -50908723 + L1MB4 LINE L1 5722 6046 -134 1 1337 1947 165 72 10 chr6 98608357 98608748 -50908289 + RLTR9F LTR ERVK 1 415 0 1 1337 380 295 14 16 chr6 98608813 98608929 -50908108 + PB1 SINE Alu 18 109 -18 1 1337 386 327 53 5 chr6 98609234 98609443 -50907594 - MER113 DNA MER1_type 0 521 303 1 1337 289 275 96 90 chr6 98609685 98609865 -50907172 - ORR1E LTR MaLR 0 379 199 1 1337 728 249 17 57 chr6 98609865 98610040 -50906997 + B3A SINE B2 1 168 -30 1 1337 471 18 0 0 chr6 98610054 98610110 -50906927 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1337 492 298 92 38 chr6 98610122 98610307 -50906730 - ORR1E LTR MaLR -164 195 1 1 1337 845 286 0 0 chr6 98611745 98611927 -50905110 - B3A SINE B2 -16 182 1 1 1337 477 273 114 0 chr6 98611943 98612075 -50904962 - B1_Mur1 SINE Alu -1 148 2 1 1337 1030 240 24 9 chr6 98612450 98612660 -50904377 + B3 SINE B2 2 214 -2 1 1337 253 333 0 0 chr6 98613014 98613077 -50903960 + tRNA-Ala-GCY_ tRNA tRNA 6 68 -7 1 1337 459 0 0 0 chr6 98613329 98613380 -50903657 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 1 1337 918 273 118 8 chr6 98615530 98615785 -50901252 - B4 SINE B4 -2 290 8 1 1337 369 0 0 0 chr6 98615813 98615854 -50901183 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1337 375 98 0 0 chr6 98616291 98616352 -50900685 + (A)n Simple_repeat Simple_repeat 1 61 0 1 1337 246 95 0 0 chr6 98616437 98616479 -50900558 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1337 494 104 0 0 chr6 98617876 98617953 -50899084 + B1_Mur3 SINE Alu 73 149 0 1 1337 207 0 0 0 chr6 98618118 98618141 -50898896 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1337 296 98 11 58 chr6 98618771 98618858 -50898179 + T-rich Low_complexity Low_complexity 2 84 0 1 1337 577 185 107 36 chr6 98618871 98619011 -50898026 - B1_Mur4 SINE Alu 0 150 1 1 1337 390 294 140 15 chr6 98619011 98619211 -50897826 - MLT1A LTR MaLR -43 331 107 1 1337 723 240 48 7 chr6 98619452 98619536 -50897501 + ID_B1 SINE B4 1 90 -134 1 1337 223 270 144 82 chr6 98619536 98619617 -50897420 + PB1D7 SINE Alu 3 89 -31 1 1337 2571 212 65 14 chr6 98619617 98620187 -50896850 + RMER19C LTR ERVK 1 599 -12 1 1337 248 263 0 17 chr6 98620239 98620297 -50896740 + ID_B1 SINE B4 163 219 -5 1 1337 3951 135 84 11 chr6 98620532 98621161 -50895876 + RLTR33 LTR ERVK 1 675 -3 1 1337 3444 43 2 15 chr6 98621424 98621825 -50895212 - MTA_Mm LTR MaLR 0 396 1 2 1337 231 257 109 9 chr6 98622243 98622353 -50894684 + L1M LINE L1 5263 5383 -790 2 1337 780 256 76 23 chr6 98622538 98622842 -50894195 - MER33 DNA MER1_type -2 322 3 2 1337 1925 158 6 9 chr6 98622983 98623302 -50893735 + L1_Mur2 LINE L1 5530 5847 -30 2 1337 930 270 49 3 chr6 98623297 98623583 -50893454 + Lx5 LINE L1 6741 7039 -11 2 1337 1565 274 57 22 chr6 98623996 98624506 -50892531 + Lx8 LINE L1 6802 7329 -144 2 1337 301 179 88 15 chr6 98624657 98624669 -50892368 + ID SINE ID 65 81 -143 2 1337 342 117 3 3 chr6 98624669 98624738 -50892299 + PB1 SINE Alu 2 70 -79 2 1337 8082 32 10 3 chr6 98624738 98626054 -50890983 - L1Md_F2 LINE L1 -39 6543 5218 2 1337 9986 68 12 2 chr6 98626050 98627337 -50889700 + L1Md_F2 LINE L1 3958 5257 -626 2 1337 360 0 0 0 chr6 98627401 98627441 -50889596 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 2 1337 376 239 35 9 chr6 98627529 98627643 -50889394 - Tigger5 DNA MER2_type -154 2252 2136 2 1337 243 0 0 0 chr6 98628831 98628858 -50888179 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1337 603 95 0 12 chr6 98629108 98629193 -50887844 + B1_Mur1 SINE Alu 63 146 -3 2 1337 494 311 50 6 chr6 98629436 98629617 -50887420 + MER5A DNA MER1_type 1 189 0 2 1337 1015 175 64 94 chr6 98629625 98629728 -50887309 - URR1A DNA MER1_type 0 226 113 2 1337 4602 97 3 34 chr6 98629728 98630345 -50886692 - MT2B LTR ERVL -3 598 1 2 1337 1015 175 64 94 chr6 98630345 98630474 -50886563 - URR1A DNA MER1_type -114 112 1 2 1337 241 313 13 121 chr6 98630653 98630802 -50886235 + MIR SINE MIR 63 195 -67 2 1337 427 188 45 76 chr6 98630892 98630998 -50886039 + PB1D7 SINE Alu 3 104 -16 2 1337 428 63 0 31 chr6 98631578 98631643 -50885394 + (TTTC)n Simple_repeat Simple_repeat 1 63 0 2 1337 397 237 10 83 chr6 98631806 98631999 -50885038 + (CACCC)n Simple_repeat Simple_repeat 1 179 0 2 1337 214 284 17 52 chr6 98631934 98632049 -50884988 + (CATCC)n Simple_repeat Simple_repeat 5 115 0 2 1337 232 150 16 32 chr6 98632051 98632113 -50884924 + C-rich Low_complexity Low_complexity 3 63 0 2 1337 21 36 0 0 chr6 98632362 98632390 -50884647 + AT_rich Low_complexity Low_complexity 1 28 0 2 1337 519 126 0 0 chr6 98632807 98632902 -50884135 + (CA)n Simple_repeat Simple_repeat 1 95 0 2 1337 275 256 197 8 chr6 98635256 98635378 -50881659 - B4A SINE B4 -6 286 142 2 1337 221 200 0 30 chr6 98635571 98635638 -50881399 + (TATG)n Simple_repeat Simple_repeat 4 68 0 2 1337 187 311 30 91 chr6 98636851 98636950 -50880087 - MIRc SINE MIR -159 109 17 2 1337 1359 169 53 36 chr6 98637115 98637457 -50879580 + ORR1B1 LTR MaLR 34 394 0 2 1337 677 63 27 69 chr6 98637570 98637758 -50879279 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1337 698 89 41 23 chr6 98637798 98637970 -50879067 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 2 1337 295 281 105 86 chr6 98638112 98638322 -50878715 + MER58A DNA MER1_type 5 218 -6 2 1337 194 290 28 42 chr6 98638705 98638777 -50878260 - L2c LINE L2 -211 3176 3106 2 1337 484 279 65 6 chr6 98639325 98639482 -50877555 - MIR SINE MIR -93 183 6 2 1337 184 310 0 145 chr6 98639508 98639591 -50877446 - L2b LINE L2 -2 3373 3303 2 1337 365 273 31 47 chr6 98639629 98639756 -50877281 + MER117 DNA MER1_type 44 168 -29 2 1337 1125 270 7 62 chr6 98639906 98640214 -50876823 - B4A SINE B4 -1 291 1 2 1337 201 167 0 0 chr6 98642346 98642382 -50874655 + A-rich Low_complexity Low_complexity 1 36 0 2 1337 243 0 0 0 chr6 98642652 98642679 -50874358 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1337 22 0 0 0 chr6 98643280 98643302 -50873735 + AT_rich Low_complexity Low_complexity 1 22 0 2 1337 490 300 150 50 chr6 98644394 98644642 -50872395 + B4 SINE B4 7 283 -9 2 1337 225 108 0 0 chr6 98644649 98644686 -50872351 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1337 666 211 204 6 chr6 98644695 98644867 -50872170 + B3 SINE B2 1 206 -10 2 1337 255 61 0 0 chr6 98644871 98644904 -50872133 + (TTC)n Simple_repeat Simple_repeat 2 34 0 2 1337 389 257 95 45 chr6 98645119 98645298 -50871739 + B3A SINE B2 1 188 -10 2 1337 297 0 0 0 chr6 98645559 98645592 -50871445 + (TAA)n Simple_repeat Simple_repeat 1 33 0 2 1337 1120 53 17 23 chr6 98645674 98645849 -50871188 + (GGGAA)n Simple_repeat Simple_repeat 5 178 0 2 1337 325 149 54 0 chr6 98645849 98645923 -50871114 + G-rich Low_complexity Low_complexity 5 82 0 2 1337 227 250 19 0 chr6 98645924 98645976 -50871061 + GA-rich Low_complexity Low_complexity 4 56 0 2 1337 327 316 90 56 chr6 98646051 98646195 -50870842 - RSINE1 SINE B4 -14 151 3 2 1337 688 247 0 20 chr6 98646212 98646361 -50870676 + B1_Mur1 SINE Alu 2 147 -2 2 1337 445 250 47 0 chr6 98647137 98647307 -50869730 + B4A SINE B4 2 195 -97 2 1337 249 33 0 0 chr6 98648533 98648563 -50868474 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1337 441 0 0 0 chr6 98648670 98648719 -50868318 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1337 346 245 135 109 chr6 98648826 98648982 -50868055 + B4A SINE B4 3 162 -130 2 1337 343 224 23 23 chr6 98649100 98649187 -50867850 + HAL1-3A_ME LINE L1 1969 2055 -803 2 1337 1372 142 26 60 chr6 98650821 98651054 -50865983 - URR1B DNA MER1_type 0 225 1 2 1337 404 254 70 16 chr6 98651277 98651405 -50865632 - B1F1 SINE Alu -5 144 10 2 1337 1493 292 59 8 chr6 98652221 98652715 -50864322 + Lx8 LINE L1 6955 7473 0 2 1337 4336 137 40 1 chr6 98652797 98653491 -50863546 + L1_Mur2 LINE L1 5035 5755 -122 2 1337 245 313 160 69 chr6 98653516 98653691 -50863346 + MER102b DNA MER1_type 2 192 -149 2 1337 808 282 76 36 chr6 98653930 98654206 -50862831 - B4 SINE B4 -4 288 2 2 1337 378 143 0 0 chr6 98654242 98654305 -50862732 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1337 927 265 5 13 chr6 98654472 98654686 -50862351 - B3 SINE B2 -4 212 6 2 1337 184 341 33 22 chr6 98655727 98655817 -50861220 + MIR SINE MIR 62 152 -56 2 1337 30 0 0 0 chr6 98656220 98656250 -50860787 + AT_rich Low_complexity Low_complexity 1 30 0 2 1337 701 254 26 31 chr6 98657052 98657243 -50859794 + B4A SINE B4 3 192 -100 2 1337 404 258 64 40 chr6 98657269 98657357 -50859680 + B1_Mur2 SINE Alu 2 86 -63 2 1337 333 0 0 0 chr6 98657357 98657394 -50859643 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1337 404 258 64 40 chr6 98657394 98657430 -50859607 + B1_Mur2 SINE Alu 87 129 -20 2 1337 978 102 0 0 chr6 98657440 98657607 -50859430 + (TAGA)n Simple_repeat Simple_repeat 2 168 0 2 1337 315 336 94 8 chr6 98657740 98657857 -50859180 + B1F SINE Alu 5 131 -18 2 1337 524 355 27 0 chr6 98658862 98659048 -50857989 - MER20 DNA MER1_type -18 201 11 2 1337 453 36 0 0 chr6 98660673 98660728 -50856309 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1337 399 321 42 137 chr6 98660736 98661043 -50855994 - B4 SINE B4 -14 278 1 2 1337 318 361 52 49 chr6 98662093 98662381 -50854656 - Helitron3Na_Mam RC Helitron 0 486 198 2 1337 2040 95 26 36 chr6 98662390 98662768 -50854269 + RLTR10A LTR ERVK 1 359 0 2 1337 526 312 295 34 chr6 98663244 98663542 -50853495 + MTEa LTR MaLR 4 379 0 2 1337 461 286 28 139 chr6 98663758 98663973 -50853064 + MTEb LTR MaLR 189 379 0 2 1337 1524 238 53 20 chr6 98664259 98664458 -50852579 + L1_Rod LINE L1 1164 1442 -4405 2 1337 326 23 23 0 chr6 98664458 98664501 -50852536 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1337 1524 251 61 32 chr6 98664501 98664844 -50852193 + L1_Rod LINE L1 1443 1789 -4058 2 1337 1040 236 28 0 chr6 98665355 98665571 -50851466 - ID_B1 SINE B4 -2 222 1 2 1337 239 0 0 31 chr6 98666612 98666644 -50850393 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 2 1337 223 344 85 15 chr6 98666965 98667095 -50849942 + MIRb SINE MIR 115 253 -15 2 1337 306 0 0 0 chr6 98668606 98668640 -50848397 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1337 1275 189 0 5 chr6 98668672 98668879 -50848158 - B3 SINE B2 -5 211 6 2 1337 629 165 147 16 chr6 98669810 98669939 -50847098 + B1_Mur4 SINE Alu 3 148 -2 2 1337 216 97 0 0 chr6 98670018 98670049 -50846988 + (GGTTG)n Simple_repeat Simple_repeat 2 32 0 2 1337 26 50 0 0 chr6 98670509 98670549 -50846488 + AT_rich Low_complexity Low_complexity 1 40 0 2 1337 852 59 0 0 chr6 98670974 98671093 -50845944 + (TC)n Simple_repeat Simple_repeat 2 120 0 2 1337 510 67 0 0 chr6 98672339 98672414 -50844623 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 2 1337 286 210 8 31 chr6 98672415 98672543 -50844494 + (TA)n Simple_repeat Simple_repeat 1 125 0 2 1337 319 288 4 0 chr6 98672543 98672622 -50844415 + PB1D10 SINE Alu 18 98 -51 2 1337 184 360 37 50 chr6 98672772 98672933 -50844104 - L2 LINE L2 -1802 1617 1459 2 1337 1157 293 59 17 chr6 98674172 98674529 -50842508 - MTEa LTR MaLR -7 372 1 2 1337 312 143 0 0 chr6 98674861 98674917 -50842120 + (TCC)n Simple_repeat Simple_repeat 2 57 0 2 1337 1091 166 66 0 chr6 98674918 98675099 -50841938 - B3 SINE B2 -15 201 9 2 1337 187 294 88 56 chr6 98675307 98675415 -50841622 - L2c LINE L2 -43 3344 3202 2 1337 442 282 128 0 chr6 98675620 98675776 -50841261 - Lx8 LINE L1 -493 6980 6805 2 1337 962 181 12 0 chr6 98676973 98677144 -50839893 + URR1A DNA MER1_type 54 226 0 2 1337 211 169 16 63 chr6 98679149 98679212 -50837825 + (CACCC)n Simple_repeat Simple_repeat 3 62 0 2 1337 366 302 28 0 chr6 98679374 98679480 -50837557 + PB1D10 SINE Alu 3 111 -6 2 1337 1180 54 0 20 chr6 98679589 98679740 -50837297 + B1_Mus1 SINE Alu 1 148 0 2 1337 332 181 0 28 chr6 98679741 98679849 -50837188 + A-rich Low_complexity Low_complexity 1 105 0 3 1337 536 272 147 37 chr6 98680088 98680279 -50836758 + B4 SINE B4 81 292 0 3 1337 293 108 62 0 chr6 98680571 98680636 -50836401 + B2_Mm1t SINE B2 118 186 -7 3 1337 186 369 0 45 chr6 98680687 98680775 -50836262 - L2a LINE L2 -41 3385 3302 3 1337 233 333 116 41 chr6 98680820 98680992 -50836045 - MER3 DNA MER1_type 0 209 25 3 1337 1272 236 24 49 chr6 98682028 98682357 -50834680 - ORR1D2 LTR MaLR -49 321 1 3 1337 195 69 0 0 chr6 98682680 98682709 -50834328 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1337 634 327 119 45 chr6 98682862 98683131 -50833906 + B4 SINE B4 3 291 -1 3 1337 846 195 0 3 chr6 98683158 98683520 -50833517 + (CA)n Simple_repeat Simple_repeat 1 360 0 3 1337 875 179 3 0 chr6 98683540 98683895 -50833142 + (CA)n Simple_repeat Simple_repeat 1 355 0 3 1337 789 311 92 13 chr6 98684127 98684443 -50832594 - MER58B DNA MER1_type 0 341 1 3 1337 488 283 71 13 chr6 98684841 98684995 -50832042 + RSINE1 SINE B4 3 165 0 3 1337 1087 66 26 0 chr6 98685002 98685229 -50831808 + (TAGA)n Simple_repeat Simple_repeat 1 232 0 3 1337 237 65 0 0 chr6 98685901 98685932 -50831105 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1337 289 330 0 92 chr6 98685950 98686080 -50830957 - RSINE1 SINE B4 -45 120 3 3 1337 212 182 55 0 chr6 98686205 98686260 -50830777 + (TA)n Simple_repeat Simple_repeat 2 59 0 3 1337 196 130 43 0 chr6 98686629 98686675 -50830362 + G-rich Low_complexity Low_complexity 5 52 0 3 1337 1069 268 115 31 chr6 98686915 98687488 -50829549 - L1MD1 LINE L1 -317 5925 5305 3 1337 225 275 130 12 chr6 98687620 98687782 -50829255 - L1MD1 LINE L1 -1019 5127 4947 3 1337 773 299 79 82 chr6 98687921 98688272 -50828765 - L1MD1 LINE L1 -2047 4099 3738 3 1337 689 279 45 5 chr6 98688272 98688474 -50828563 - B3 SINE B2 -6 210 1 3 1337 773 299 79 82 chr6 98688474 98688941 -50828096 - L1MD1 LINE L1 -2409 3737 3283 3 1337 4601 183 33 21 chr6 98688939 98690006 -50827031 - Lx2B LINE L1 -8 7050 5881 3 1337 1259 119 47 0 chr6 98690004 98690240 -50826797 + MusHAL1 LINE L1 1377 1623 -1089 3 1337 423 220 11 0 chr6 98690333 98690424 -50826613 + Lx4B LINE L1 6252 6343 -715 3 1337 346 272 47 23 chr6 98690525 98690653 -50826384 - MTD LTR MaLR -281 138 8 3 1337 295 246 0 0 chr6 98690986 98691043 -50825994 + ID4 SINE ID 2 58 -25 3 1337 1505 343 42 50 chr6 98691062 98691899 -50825138 - MER63C DNA AcHobo -100 830 1 3 1337 1028 319 89 52 chr6 98692350 98692853 -50824184 - MT2A LTR ERVL -11 522 1 3 1337 214 376 39 39 chr6 98692997 98693152 -50823885 - L2 LINE L2 -418 3001 2847 3 1337 29 0 0 0 chr6 98693154 98693183 -50823854 + AT_rich Low_complexity Low_complexity 1 29 0 3 1337 471 233 36 18 chr6 98693894 98694060 -50822977 - CR1_Mam LINE CR1 -1531 673 505 3 1337 651 229 35 30 chr6 98694080 98694278 -50822759 - CR1_Mam LINE CR1 -1804 400 202 3 1337 204 40 0 0 chr6 98694309 98694334 -50822703 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1337 1002 250 0 0 chr6 98694591 98694803 -50822234 - B3 SINE B2 -3 213 2 3 1337 22 0 0 0 chr6 98696652 98696674 -50820363 + AT_rich Low_complexity Low_complexity 1 22 0 3 1337 619 12 25 0 chr6 98696996 98697076 -50819961 + (GA)n Simple_repeat Simple_repeat 2 83 0 3 1338 195 42 0 0 chr6 98697955 98697979 -50819058 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1338 183 80 0 0 chr6 98700333 98700358 -50816679 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1338 258 105 0 0 chr6 98700609 98700647 -50816390 + (CAAAG)n Simple_repeat Simple_repeat 2 39 0 3 1338 354 365 126 25 chr6 98701367 98701645 -50815392 - MLT1J2 LTR MaLR -92 356 51 3 1338 28 29 0 0 chr6 98702578 98702613 -50814424 + AT_rich Low_complexity Low_complexity 1 35 0 3 1338 279 71 0 0 chr6 98702640 98702682 -50814355 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 3 1338 278 273 0 0 chr6 98702742 98702797 -50814240 - B3A SINE B2 -142 56 2 3 1338 1352 237 89 11 chr6 98702997 98703355 -50813682 - Kanga1d DNA Tc2 -56 553 168 3 1338 835 245 41 10 chr6 98703881 98704075 -50812962 + B3 SINE B2 2 201 -15 3 1338 561 285 0 0 chr6 98705133 98705270 -50811767 - B1_Mur1 SINE Alu -11 138 2 3 1338 262 307 118 0 chr6 98705389 98705516 -50811521 - B1F1 SINE Alu -5 144 3 3 1338 320 222 28 0 chr6 98706056 98706164 -50810873 + L1M4 LINE L1 5708 5818 -366 3 1338 2205 171 166 23 chr6 98706470 98706558 -50810479 + RMER6C LTR ERVK 1 136 -554 3 1338 348 24 0 0 chr6 98706558 98706599 -50810438 + (ATTAG)n Simple_repeat Simple_repeat 4 44 0 3 1338 2205 171 166 23 chr6 98706599 98706785 -50810252 + RMER6C LTR ERVK 137 340 -350 3 1338 1711 16 0 0 chr6 98706785 98706975 -50810062 + B2_Mm1t SINE B2 1 190 -3 3 1338 347 0 23 0 chr6 98706985 98707028 -50810009 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1338 2205 171 166 23 chr6 98707028 98707266 -50809771 + RMER6C LTR ERVK 350 599 -91 3 1338 678 85 0 0 chr6 98708215 98708309 -50808728 + (TTTTC)n Simple_repeat Simple_repeat 2 95 0 3 1338 295 277 0 0 chr6 98710633 98710698 -50806339 + ID4 SINE ID 1 65 -18 3 1338 227 234 78 0 chr6 98710713 98710777 -50806260 + GA-rich Low_complexity Low_complexity 3 71 0 3 1338 429 358 94 5 chr6 98711432 98711623 -50805414 + Tigger7 DNA MER2_type 204 411 -2080 3 1338 22 56 0 0 chr6 98711630 98711666 -50805371 + AT_rich Low_complexity Low_complexity 1 36 0 3 1338 493 276 91 11 chr6 98711696 98711883 -50805154 + Tigger7 DNA MER2_type 2245 2446 -45 3 1338 231 337 43 11 chr6 98712275 98712368 -50804669 - Charlie4z DNA MER1_type -67 100 5 3 1338 434 99 0 24 chr6 98712510 98712593 -50804444 + (CAGAGA)n Simple_repeat Simple_repeat 2 82 0 3 1338 612 292 11 11 chr6 98712749 98712929 -50804108 + B3A SINE B2 1 180 -18 3 1338 8358 40 0 4 chr6 98712987 98714057 -50802980 - L1Md_F2 LINE L1 -409 5474 4409 3 1338 1044 39 0 0 chr6 98714055 98714182 -50802855 + L1Md_F2 LINE L1 5460 5586 -297 3 1338 8122 37 13 4 chr6 98714182 98715166 -50801871 + L1Md_F2 LINE L1 5587 6579 -3 3 1338 180 0 0 0 chr6 98715388 98715408 -50801629 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1338 1169 49 7 0 chr6 98716181 98716325 -50800712 + B1_Mus1 SINE Alu 2 146 -2 3 1338 274 23 23 23 chr6 98716325 98716369 -50800668 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1338 688 269 126 18 chr6 98716495 98716743 -50800294 + B4 SINE B4 5 274 -18 3 1338 276 30 0 0 chr6 98720005 98720038 -50796999 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 1338 572 338 110 32 chr6 98720970 98721279 -50795758 + MLT1A0 LTR MaLR 2 334 -31 3 1338 238 252 29 5 chr6 98721425 98721509 -50795528 + B4A SINE B4 2 85 -80 3 1338 759 227 55 0 chr6 98721461 98721624 -50795413 + B3 SINE B2 37 208 -8 3 1338 22 80 0 0 chr6 98721624 98721674 -50795363 + AT_rich Low_complexity Low_complexity 1 50 0 3 1338 429 143 14 14 chr6 98721979 98722050 -50794987 + ID4_ SINE ID 4 74 -9 3 1338 201 39 0 0 chr6 98722078 98722104 -50794933 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 3 1338 416 286 4 47 chr6 98722327 98722461 -50794576 + B3A SINE B2 1 127 -66 3 1338 405 88 11 42 chr6 98722545 98722640 -50794397 + (TTTG)n Simple_repeat Simple_repeat 1 92 0 3 1338 1201 48 0 13 chr6 98722640 98722789 -50794248 - B1_Mus1 SINE Alu -1 147 1 3 1338 252 318 135 0 chr6 98722806 98722932 -50794105 + B1_Mur2 SINE Alu 1 143 -6 3 1338 232 229 81 16 chr6 98723038 98723100 -50793937 - ID4_ SINE ID -17 66 1 3 1338 668 216 14 11 chr6 98723647 98723879 -50793158 + GA-rich Low_complexity Low_complexity 1 232 0 3 1338 1019 92 17 17 chr6 98723879 98724055 -50792982 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 3 1338 228 341 30 8 chr6 98724075 98724208 -50792829 + L1MD3 LINE L1 7788 7923 -72 3 1338 777 219 23 18 chr6 98724208 98724385 -50792652 + B3 SINE B2 35 211 -5 3 1338 799 287 40 96 chr6 98724433 98724734 -50792303 + B4 SINE B4 6 289 -3 3 1338 251 220 0 0 chr6 98725795 98725845 -50791192 + MLT1K LTR MaLR 1 50 -545 3 1338 367 373 29 23 chr6 98725946 98726119 -50790918 + MLT1K LTR MaLR 130 303 -292 3 1338 221 311 97 0 chr6 98726670 98726773 -50790264 + MIRc SINE MIR 30 142 -126 3 1338 246 344 83 10 chr6 98727810 98728038 -50788999 + Charlie4 DNA MER1_type 57 305 -1656 3 1338 556 238 76 97 chr6 98729031 98729397 -50787640 - MTEa LTR MaLR 0 379 8 3 1338 1079 122 0 0 chr6 98729700 98729848 -50787189 + B1_Mus1 SINE Alu 1 148 0 3 1338 23 0 0 0 chr6 98730800 98730823 -50786214 + AT_rich Low_complexity Low_complexity 1 23 0 3 1338 672 312 79 34 chr6 98730935 98731200 -50785837 + B4 SINE B4 10 286 -6 3 1338 23 33 0 0 chr6 98731371 98731401 -50785636 + AT_rich Low_complexity Low_complexity 1 30 0 3 1338 315 312 55 14 chr6 98731688 98731834 -50785203 - B4A SINE B4 -138 154 3 3 1338 307 184 26 0 chr6 98732756 98732830 -50784207 + B3A SINE B2 1 81 -135 3 1338 342 173 28 39 chr6 98732834 98733014 -50784023 + (CATA)n Simple_repeat Simple_repeat 3 180 0 3 1338 607 129 40 23 chr6 98733040 98733214 -50783823 + (CATA)n Simple_repeat Simple_repeat 2 178 0 3 1338 1095 286 29 4 chr6 98733262 98733543 -50783494 + B4A SINE B4 1 288 -4 3 1338 189 0 0 0 chr6 98733560 98733581 -50783456 + (CATA)n Simple_repeat Simple_repeat 4 24 0 3 1338 21 0 0 0 chr6 98733914 98733935 -50783102 + AT_rich Low_complexity Low_complexity 1 21 0 3 1338 562 232 54 0 chr6 98734009 98734121 -50782916 + B1_Mur1 SINE Alu 1 118 -31 3 1338 297 51 0 0 chr6 98734128 98734167 -50782870 + (TATG)n Simple_repeat Simple_repeat 4 42 0 3 1338 270 0 0 0 chr6 98736439 98736469 -50780568 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1338 387 0 0 0 chr6 98736469 98736511 -50780526 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1338 285 131 0 0 chr6 98737121 98737182 -50779855 + (TTTTTG)n Simple_repeat Simple_repeat 3 63 0 3 1338 254 321 54 27 chr6 98737402 98737514 -50779523 - MIRb SINE MIR -8 260 146 3 1338 21 0 0 0 chr6 98737933 98737954 -50779083 + AT_rich Low_complexity Low_complexity 1 21 0 3 1338 664 236 22 103 chr6 98738323 98738507 -50778530 + B4 SINE B4 1 169 -123 3 1338 1123 123 0 21 chr6 98738493 98738684 -50778353 + ORR1A4 LTR MaLR 102 288 -41 4 1338 216 0 0 0 chr6 98738857 98738881 -50778156 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1338 379 279 106 81 chr6 98739025 98739185 -50777852 - RSINE1 SINE B4 0 165 2 4 1338 258 336 53 0 chr6 98739195 98739308 -50777729 - MER58B DNA MER1_type -15 326 208 4 1338 684 272 178 57 chr6 98739629 98739960 -50777077 + MTEa LTR MaLR 1 371 -8 4 1338 243 250 0 14 chr6 98739981 98740050 -50776987 + ID SINE ID 1 68 -156 4 1338 2987 161 45 20 chr6 98740208 98740761 -50776276 - RLTR20B3 LTR ERVK 0 577 11 4 1338 414 0 0 0 chr6 98740933 98740979 -50776058 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1338 227 368 95 12 chr6 98741059 98741227 -50775810 + LTR50 LTR ERVL 20 201 -594 4 1338 267 314 126 39 chr6 98741273 98741455 -50775582 + LTR50 LTR ERVL 349 546 -249 4 1338 234 273 118 47 chr6 98741652 98741779 -50775258 - MER45R DNA Tip100 0 1581 1446 4 1338 267 303 30 0 chr6 98741897 98741963 -50775074 + ID4 SINE ID 2 69 -14 4 1338 245 312 72 0 chr6 98742020 98742145 -50774892 - MER45B DNA Tip100 -217 823 690 4 1338 696 255 75 21 chr6 98742179 98742367 -50774670 - B4A SINE B4 0 292 95 4 1338 614 222 0 43 chr6 98742353 98742477 -50774560 + B1_Mur1 SINE Alu 14 135 -14 4 1338 3089 63 2 34 chr6 98742477 98742886 -50774151 + MTA_Mm LTR MaLR 1 396 0 4 1338 614 222 0 43 chr6 98742886 98742902 -50774135 + B1_Mur1 SINE Alu 136 148 -1 4 1338 248 241 261 11 chr6 98742922 98743010 -50774027 - B4 SINE B4 -181 111 2 4 1338 16442 47 3 4 chr6 98743094 98745837 -50771200 - L1Md_F2 LINE L1 0 6582 3841 4 1338 238 236 0 35 chr6 98746064 98746121 -50770916 + PB1D10 SINE Alu 40 94 -23 4 1338 21 57 0 0 chr6 98747086 98747121 -50769916 + AT_rich Low_complexity Low_complexity 1 35 0 4 1338 475 207 33 8 chr6 98750746 98750868 -50766169 + L1MA5 LINE L1 6165 6289 -11 4 1338 189 0 0 0 chr6 98751041 98751062 -50765975 + (CGGG)n Simple_repeat Simple_repeat 1 21 0 4 1338 261 311 0 46 chr6 98751969 98752077 -50764960 - MIRb SINE MIR -164 104 2 4 1338 306 0 0 0 chr6 98752580 98752614 -50764423 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1338 644 239 113 0 chr6 98752622 98752781 -50764256 - B3 SINE B2 -35 181 5 4 1338 263 328 29 36 chr6 98752781 98752920 -50764117 + MIR3 SINE MIR 59 196 -12 4 1338 743 314 36 28 chr6 98753084 98753333 -50763704 - B4A SINE B4 0 292 42 4 1338 397 298 92 29 chr6 98754438 98754711 -50762326 + MamRep434 DNA TcMar 112 401 -25 4 1338 246 273 18 0 chr6 98754899 98754954 -50762083 + polypurine Low_complexity Low_complexity 3 58 0 4 1338 483 148 0 36 chr6 98755232 98755316 -50761721 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 1338 630 204 23 6 chr6 98755317 98755494 -50761543 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 1338 257 246 0 40 chr6 98756133 98756209 -50760828 + MER31-int LTR ERV1 4373 4445 -491 4 1338 245 304 9 29 chr6 98756593 98756698 -50760339 + GA-rich Low_complexity Low_complexity 6 108 0 4 1338 482 325 19 6 chr6 98756747 98756905 -50760132 + RSINE1 SINE B4 2 161 -4 4 1338 432 0 0 0 chr6 98756954 98757002 -50760035 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1338 772 328 14 34 chr6 98757526 98757817 -50759220 + B4A SINE B4 8 292 0 4 1338 262 291 61 50 chr6 98759243 98759424 -50757613 - MER33 DNA MER1_type -1 323 141 4 1338 231 262 69 81 chr6 98759428 98759515 -50757522 + ID_B1 SINE B4 81 166 -58 4 1338 1544 202 72 23 chr6 98759523 98759913 -50757124 + MTD LTR MaLR 3 411 -8 4 1338 662 161 101 182 chr6 98760061 98760319 -50756718 - ORR1C2 LTR MaLR -3 381 145 4 1338 405 58 0 0 chr6 98760366 98760418 -50756619 + (TTA)n Simple_repeat Simple_repeat 3 54 0 4 1338 519 295 35 35 chr6 98760419 98760591 -50756446 - B3A SINE B2 -26 172 1 4 1338 3134 37 3 0 chr6 98760680 98761056 -50755981 - L1Md_A LINE L1 0 6582 6206 4 1338 264 242 92 26 chr6 98761086 98761239 -50755798 - Lx9 LINE L1 0 7644 7482 4 1338 7247 236 70 63 chr6 98761268 98764553 -50752484 - Lx9 LINE L1 -496 7148 3810 4 1338 228 211 39 0 chr6 98764807 98764859 -50752178 - MLT1D LTR MaLR -51 454 401 4 1338 737 266 20 30 chr6 98764861 98765059 -50751978 + B3A SINE B2 3 198 0 4 1338 300 281 20 40 chr6 98765116 98765216 -50751821 - ID_B1 SINE B4 -125 99 2 4 1338 475 214 149 7 chr6 98765669 98765810 -50751227 - MTD LTR MaLR -35 384 224 4 1338 441 240 131 8 chr6 98765829 98765959 -50751078 - MTD LTR MaLR -260 159 14 4 1338 23 0 0 0 chr6 98765959 98765982 -50751055 + AT_rich Low_complexity Low_complexity 1 23 0 4 1338 2378 84 12 56 chr6 98766039 98766379 -50750658 - ORR1A2 LTR MaLR 0 327 3 4 1338 3116 6 46 0 chr6 98767406 98767757 -50749280 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1338 56361 24 14 13 chr6 98767757 98774226 -50742811 - IAPEz-int LTR ERVK 0 6481 8 4 1338 3116 6 46 0 chr6 98774226 98774577 -50742460 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1338 546 279 108 26 chr6 98774590 98774785 -50742252 + B4 SINE B4 82 292 0 4 1338 352 82 33 0 chr6 98774819 98774880 -50742157 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1338 936 226 104 8 chr6 98775499 98775749 -50741288 - Lx8 LINE L1 -18 7455 7182 4 1338 355 172 32 65 chr6 98775746 98775839 -50741198 - L1_Mur3 LINE L1 -7007 705 616 4 1338 2468 159 28 16 chr6 98775839 98776273 -50740764 + Lx4B LINE L1 6613 7051 -7 4 1338 367 275 92 84 chr6 98776312 98776443 -50740594 + RSINE1 SINE B4 34 165 0 4 1338 193 333 0 0 chr6 98776484 98776532 -50740505 - L2a LINE L2 -98 3328 3281 4 1338 206 182 0 22 chr6 98777350 98777395 -50739642 + CT-rich Low_complexity Low_complexity 4 47 0 4 1338 230 273 63 74 chr6 98777744 98777839 -50739198 - MER58C DNA MER1_type -121 94 1 4 1338 2155 164 62 17 chr6 98778050 98778453 -50738584 + MTC LTR MaLR 1 421 0 4 1338 344 71 18 0 chr6 98778752 98778808 -50738229 + (CCAA)n Simple_repeat Simple_repeat 3 59 0 4 1338 249 280 53 0 chr6 98779387 98779462 -50737575 + ID2 SINE ID 2 80 -3 4 1338 1153 233 155 7 chr6 98780719 98781079 -50735958 + MTD LTR MaLR 3 401 -18 4 1338 369 0 0 0 chr6 98781213 98781254 -50735783 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1338 1050 281 48 67 chr6 98781329 98781790 -50735247 - Lx8 LINE L1 0 7473 7022 4 1338 420 288 144 16 chr6 98781797 98781991 -50735046 - B4A SINE B4 -73 219 1 4 1338 249 271 12 0 chr6 98782179 98782264 -50734773 + CT-rich Low_complexity Low_complexity 1 86 0 4 1338 1003 185 120 0 chr6 98782578 98782778 -50734259 + URR1A DNA MER1_type 2 225 -1 4 1338 758 138 6 18 chr6 98783035 98783198 -50733839 + GA-rich Low_complexity Low_complexity 1 161 0 4 1338 189 0 0 0 chr6 98783198 98783219 -50733818 + (TTG)n Simple_repeat Simple_repeat 3 23 0 4 1338 502 237 17 9 chr6 98783828 98783943 -50733094 + B4A SINE B4 9 124 -168 4 1338 1090 73 0 0 chr6 98784252 98784389 -50732648 + B1_Mus1 SINE Alu 1 137 -11 4 1338 225 0 0 0 chr6 98784389 98784414 -50732623 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1338 242 289 13 13 chr6 98784426 98784503 -50732534 + RSINE1 SINE B4 2 78 -87 4 1338 27 0 0 0 chr6 98784511 98784538 -50732499 + AT_rich Low_complexity Low_complexity 1 27 0 4 1338 690 306 81 44 chr6 98784552 98784825 -50732212 + B4 SINE B4 6 288 -4 4 1338 22 56 0 0 chr6 98784893 98784929 -50732108 + AT_rich Low_complexity Low_complexity 1 36 0 4 1338 233 260 25 38 chr6 98786158 98786238 -50730799 + MLT1A1 LTR MaLR 318 396 -12 4 1338 756 217 7 0 chr6 98786453 98786591 -50730446 + B1_Mus1 SINE Alu 1 139 -9 4 1338 516 32 0 0 chr6 98786591 98786653 -50730384 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 1338 348 64 0 0 chr6 98786653 98786700 -50730337 + (GGA)n Simple_repeat Simple_repeat 2 48 0 4 1338 433 247 29 18 chr6 98786811 98786938 -50730099 + B1_Mur2 SINE Alu 1 132 -17 4 1338 387 0 0 0 chr6 98786943 98786986 -50730051 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1338 226 279 46 11 chr6 98787255 98787342 -50729695 - MLT2B3 LTR ERVL -464 90 1 4 1338 1657 219 63 8 chr6 98787375 98787756 -50729281 - MTD LTR MaLR -17 402 1 4 1338 585 279 158 31 chr6 98788545 98788804 -50728233 - B4A SINE B4 0 292 1 4 1338 534 70 0 0 chr6 98789010 98789081 -50727956 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 4 1338 290 211 9 27 chr6 98789178 98789290 -50727747 + GA-rich Low_complexity Low_complexity 5 114 0 4 1338 230 0 0 32 chr6 98789507 98789538 -50727499 + (TTG)n Simple_repeat Simple_repeat 3 32 0 4 1338 324 0 0 0 chr6 98789626 98789662 -50727375 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1338 817 242 21 50 chr6 98789736 98789975 -50727062 - B4 SINE B4 -44 248 17 4 1338 346 352 87 16 chr6 98791422 98791676 -50725361 - B4 SINE B4 -19 273 2 4 1338 800 205 73 60 chr6 98792004 98792164 -50724873 + ORR1D1 LTR MaLR 1 156 -218 4 1338 360 0 0 0 chr6 98792164 98792204 -50724833 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1338 279 0 0 0 chr6 98792204 98792234 -50724803 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1338 800 205 73 60 chr6 98792234 98792290 -50724747 + ORR1D1 LTR MaLR 157 220 -154 4 1338 360 236 56 9 chr6 98793060 98793154 -50723883 - MER5A DNA MER1_type -39 150 52 4 1338 334 220 186 35 chr6 98793154 98793267 -50723770 + B1F SINE Alu 3 132 -17 4 1338 227 271 0 17 chr6 98793272 98793332 -50723705 + GA-rich Low_complexity Low_complexity 2 60 0 4 1338 249 57 0 0 chr6 98793555 98793590 -50723447 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 4 1338 241 320 0 102 chr6 98794381 98794489 -50722548 + MLT1A0 LTR MaLR 3 99 -266 4 1338 227 271 81 186 chr6 98797674 98797932 -50719105 + MLT1A0 LTR MaLR 130 360 -30 4 1338 844 175 197 6 chr6 98798025 98798203 -50718834 + B3 SINE B2 1 212 -4 4 1338 4353 81 21 3 chr6 98799229 98799809 -50717228 + L1_Mus4 LINE L1 6035 6624 -12 5 1338 25 0 0 0 chr6 98799809 98799834 -50717203 + AT_rich Low_complexity Low_complexity 1 25 0 5 1338 2007 235 97 105 chr6 98802266 98803154 -50713883 + RMER17B LTR ERVK 1 881 -77 5 1338 539 285 0 23 chr6 98803159 98803292 -50713745 + B3A SINE B2 52 181 -17 5 1338 1464 306 75 26 chr6 98803320 98804345 -50712692 + L1MD LINE L1 4400 5479 -763 5 1338 530 263 101 17 chr6 98804351 98804513 -50712524 + B3A SINE B2 2 180 -18 5 1338 405 0 0 0 chr6 98804513 98804558 -50712479 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1338 530 263 101 17 chr6 98804558 98804573 -50712464 + B3A SINE B2 181 193 -5 5 1338 887 269 20 13 chr6 98804647 98804954 -50712083 + L1MD LINE L1 5470 5763 -596 5 1338 490 262 0 0 chr6 98805304 98805430 -50711607 + B3 SINE B2 1 126 -90 5 1338 363 23 0 0 chr6 98805465 98805509 -50711528 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1338 369 0 0 0 chr6 98805509 98805549 -50711488 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1338 234 0 0 0 chr6 98805568 98805594 -50711443 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5 1338 775 262 172 8 chr6 98805974 98806224 -50710813 + B4 SINE B4 2 292 0 5 1338 372 77 0 0 chr6 98806227 98806279 -50710758 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1338 198 0 0 0 chr6 98806739 98806761 -50710276 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1338 348 127 0 0 chr6 98806985 98807040 -50709997 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1338 236 308 0 60 chr6 98807929 98808112 -50708925 + (TTAG)n Simple_repeat Simple_repeat 4 175 0 5 1338 356 284 186 19 chr6 98808503 98808921 -50708116 - L1MA4A LINE L1 -334 5963 5468 5 1338 625 219 99 22 chr6 98808950 98809132 -50707905 - RMER15 LTR ERVL -44 531 336 5 1338 282 222 48 71 chr6 98809405 98809531 -50707506 - L1MA4A LINE L1 -857 5440 5318 5 1338 652 285 114 62 chr6 98809570 98810334 -50706703 - L1MA4A LINE L1 -874 5269 4442 5 1338 265 329 9 1 chr6 98810893 98811056 -50705981 - L1MA4A LINE L1 -1741 4402 4239 5 1338 487 98 35 26 chr6 98811102 98811217 -50705820 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 5 1338 300 227 15 0 chr6 98811243 98811309 -50705728 - L1MA4A LINE L1 -1974 4166 4100 5 1338 922 326 28 23 chr6 98811485 98811837 -50705200 - MTE2b LTR MaLR -18 361 8 5 1338 426 20 0 0 chr6 98812748 98812799 -50704238 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1338 299 45 0 22 chr6 98813622 98813668 -50703369 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1338 242 274 14 0 chr6 98813890 98813963 -50703074 + MTEb LTR MaLR 278 351 -28 5 1338 851 248 54 5 chr6 98814188 98814221 -50702816 - B3 SINE B2 -3 213 181 5 1338 198 71 0 0 chr6 98814221 98814249 -50702788 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 5 1338 851 248 54 5 chr6 98814249 98814418 -50702619 - B3 SINE B2 -36 180 1 5 1338 260 331 40 0 chr6 98814493 98814617 -50702420 - L1MC5 LINE L1 -516 7445 7317 5 1338 330 291 58 36 chr6 98815491 98815630 -50701407 - MER20 DNA MER1_type -48 171 30 5 1338 1045 307 31 40 chr6 98816080 98816558 -50700479 - L1MB3 LINE L1 -217 5966 5493 5 1338 351 0 0 0 chr6 98816710 98816749 -50700288 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1338 31 26 0 0 chr6 98816801 98816839 -50700198 + AT_rich Low_complexity Low_complexity 1 38 0 5 1338 625 263 28 39 chr6 98816861 98817039 -50699998 - B3 SINE B2 -5 211 36 5 1338 424 218 117 21 chr6 98818674 98818819 -50698218 + MER53 DNA hAT 1 159 -34 5 1338 279 0 0 0 chr6 98818853 98818884 -50698153 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1338 268 379 78 59 chr6 98819179 98819499 -50697538 - MLT1A1 LTR MaLR -27 381 56 5 1338 1031 117 26 77 chr6 98820465 98820659 -50696378 + URR1B DNA MER1_type 1 184 -41 5 1338 1299 237 107 8 chr6 98820829 98821203 -50695834 + MTD LTR MaLR 8 418 -1 5 1338 229 303 0 0 chr6 98821462 98821528 -50695509 - MLT1K LTR MaLR 0 595 530 5 1338 1508 226 32 30 chr6 98821547 98821920 -50695117 - ORR1D1 LTR MaLR 0 374 1 5 1338 276 53 0 0 chr6 98822133 98822171 -50694866 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1338 261 286 102 8 chr6 98822926 98823053 -50693984 + MIR SINE MIR 61 206 -62 5 1338 406 324 23 23 chr6 98823179 98823356 -50693681 - MER45A DNA Tip100 0 178 2 5 1338 1378 203 114 3 chr6 98825084 98825425 -50691612 - MTE2b LTR MaLR 0 379 1 5 1338 279 285 426 52 chr6 98825425 98825611 -50691426 + Tigger7 DNA MER2_type 52 308 -2183 5 1338 491 257 46 23 chr6 98825703 98825878 -50691159 - L1MA6 LINE L1 -41 6259 6081 5 1338 478 318 103 27 chr6 98825911 98826241 -50690796 + Tigger7 DNA MER2_type 2137 2491 0 5 1338 431 363 28 38 chr6 98826260 98826281 -50690756 + MER58A DNA MER1_type 5 22 -202 5 1338 2256 148 46 5 chr6 98826281 98826648 -50690389 - ORR1C2 LTR MaLR -2 382 1 5 1338 431 363 28 38 chr6 98826648 98826838 -50690199 + MER58A DNA MER1_type 23 214 -10 5 1338 223 209 26 0 chr6 98827568 98827631 -50689406 + MIRm SINE MIR 106 178 -98 5 1338 198 0 0 0 chr6 98827639 98827661 -50689376 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1338 318 320 20 0 chr6 98827695 98827795 -50689242 + PB1D10 SINE Alu 3 104 -13 5 1338 378 0 0 0 chr6 98828125 98828167 -50688870 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1338 588 124 0 0 chr6 98828167 98828272 -50688765 + (GA)n Simple_repeat Simple_repeat 2 106 0 5 1339 1363 190 119 30 chr6 98828340 98828677 -50688360 + ORR1D1 LTR MaLR 6 372 -2 5 1339 264 289 0 0 chr6 98829466 98829542 -50687495 + PB1D10 SINE Alu 15 90 -27 5 1339 495 107 0 0 chr6 98829564 98829639 -50687398 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 5 1339 248 175 0 16 chr6 98830250 98830314 -50686723 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1339 758 260 76 72 chr6 98830323 98830613 -50686424 - B4 SINE B4 0 292 2 5 1339 39989 30 0 7 chr6 98831363 98837330 -50679707 - L1Md_F2 LINE L1 0 6582 670 5 1339 285 98 0 0 chr6 98837417 98837458 -50679579 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1339 391 325 80 96 chr6 98837539 98838086 -50678951 + RMER20B LTR ERVK 30 596 -31 5 1339 294 335 51 30 chr6 98838840 98839033 -50678004 - MLT2B1 LTR ERVL -155 360 172 5 1339 276 350 70 56 chr6 98839076 98839291 -50677746 - MTEa LTR MaLR -157 222 5 5 1339 297 188 11 158 chr6 98839647 98839687 -50677350 + MTEb LTR MaLR 297 323 -56 5 1339 1217 143 31 13 chr6 98839687 98839913 -50677124 - Lx2 LINE L1 0 6997 6768 5 1339 297 188 11 158 chr6 98839913 98839967 -50677070 + MTEb LTR MaLR 324 377 -2 5 1339 557 64 0 13 chr6 98840494 98840573 -50676464 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 5 1339 225 0 0 0 chr6 98841102 98841127 -50675910 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1339 317 231 13 13 chr6 98841174 98841253 -50675784 + L1ME3A LINE L1 5912 5990 -183 5 1339 422 323 71 56 chr6 98841249 98841467 -50675570 - L1MD3 LINE L1 -892 7103 6875 5 1339 1686 176 113 58 chr6 98841467 98841866 -50675171 - MTC LTR MaLR 0 421 1 5 1339 422 323 71 56 chr6 98841866 98841985 -50675052 - L1MD3 LINE L1 -1121 6874 6761 5 1339 782 269 0 5 chr6 98842077 98842264 -50674773 + B3 SINE B2 24 209 -7 5 1339 453 116 0 0 chr6 98842740 98842809 -50674228 + (GGGAA)n Simple_repeat Simple_repeat 4 72 0 5 1339 1112 180 41 5 chr6 98843927 98844145 -50672892 + URR1A DNA MER1_type 1 226 0 5 1339 482 180 0 22 chr6 98844227 98844318 -50672719 + MTC LTR MaLR 333 421 0 5 1339 4943 204 95 16 chr6 98844322 98845485 -50671552 + MTC-int LTR MaLR 5 1258 0 5 1339 1906 167 45 45 chr6 98845485 98845834 -50671203 + MTC LTR MaLR 1 352 -69 5 1339 2890 62 8 3 chr6 98845834 98846207 -50670830 + L1Md_F2 LINE L1 6206 6580 -2 5 1339 1906 167 45 45 chr6 98846207 98846259 -50670778 + MTC LTR MaLR 353 402 -19 5 1339 279 79 0 0 chr6 98846299 98846337 -50670700 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 5 1339 477 192 56 48 chr6 98846338 98846464 -50670573 - B1_Mur1 SINE Alu -5 144 18 5 1339 491 305 15 0 chr6 98846594 98846725 -50670312 - ID_B1 SINE B4 -90 134 2 5 1339 207 0 0 0 chr6 98846874 98846897 -50670140 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1339 1275 27 0 0 chr6 98846897 98847044 -50669993 - B1_Mm SINE Alu 0 147 1 5 1339 235 227 130 26 chr6 98847089 98847166 -50669871 - B1_Mur3 SINE Alu 0 149 65 5 1339 553 239 35 0 chr6 98847136 98847249 -50669788 - B1_Mur1 SINE Alu -26 123 7 5 1339 457 309 88 43 chr6 98847361 98847823 -50669214 - L1M5 LINE L1 -470 5770 5283 5 1339 207 204 0 0 chr6 98849012 98849061 -50667976 + CT-rich Low_complexity Low_complexity 4 52 0 5 1339 306 0 0 0 chr6 98849316 98849350 -50667687 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1339 268 246 67 50 chr6 98849953 98850073 -50666964 - L1M5 LINE L1 -462 5717 5596 5 1339 296 289 130 19 chr6 98850191 98850206 -50666831 - L1MA4 LINE L1 -294 6006 5993 5 1339 417 20 0 0 chr6 98850206 98850256 -50666781 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1339 296 289 130 19 chr6 98850256 98850402 -50666635 - L1MA4 LINE L1 -308 5992 5827 5 1339 1011 259 53 66 chr6 98850709 98850759 -50666278 - L1MA4 LINE L1 -563 5734 5690 5 1339 3116 58 15 8 chr6 98850759 98851156 -50665881 - MTB LTR MaLR 0 400 1 5 1339 1011 259 51 59 chr6 98851156 98851751 -50665286 - L1MA4 LINE L1 -608 5689 5083 5 1339 588 226 8 8 chr6 98851801 98851941 -50665096 - B1_Mur1 SINE Alu -9 140 1 5 1339 317 277 0 11 chr6 98851946 98852041 -50664996 - L1MA4 LINE L1 -1099 5044 4951 5 1339 408 268 15 76 chr6 98852144 98852359 -50664678 - L1MA4 LINE L1 -1347 4793 4588 5 1339 576 293 36 70 chr6 98852855 98853320 -50663717 + L1_Mur3 LINE L1 900 1360 -4520 5 1339 771 215 23 6 chr6 98853341 98853514 -50663523 - B3 SINE B2 -1 215 40 5 1339 263 146 18 0 chr6 98853727 98853782 -50663255 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 5 1339 358 20 39 0 chr6 98854063 98854114 -50662923 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 5 1339 1129 195 171 142 chr6 98854116 98854565 -50662472 - MT2A LTR ERVL -71 462 1 5 1339 441 0 0 0 chr6 98854618 98854667 -50662370 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1339 420 272 32 50 chr6 98854793 98855066 -50661971 + L1M LINE L1 5259 5519 -825 5 1339 189 237 0 0 chr6 98855075 98855134 -50661903 + (CAATA)n Simple_repeat Simple_repeat 4 62 0 5 1339 3208 9 0 0 chr6 98855356 98855706 -50661331 + MERVL-int LTR ERVL 1179 1528 -3957 5 1339 382 59 0 0 chr6 98855706 98855757 -50661280 - MT2C_Mm LTR ERVL -424 51 1 5 1339 309 26 0 0 chr6 98855757 98855795 -50661242 - MERVL-int LTR ERVL 0 5485 5448 5 1339 328 125 26 53 chr6 98855795 98855871 -50661166 - ORR1A3-int LTR MaLR -1323 640 567 5 1339 6712 30 1 0 chr6 98855871 98856636 -50660401 - MERVL-int LTR ERVL -114 5371 4606 5 1339 399 313 58 48 chr6 98856844 98857220 -50659817 - L1MEc LINE L1 -907 5412 5033 5 1339 291 266 46 0 chr6 98857278 98857363 -50659674 + ID4_ SINE ID 6 98 -54 6 1339 362 185 12 0 chr6 98857367 98857448 -50659589 + GA-rich Low_complexity Low_complexity 4 85 0 6 1339 405 196 33 0 chr6 98857515 98857607 -50659430 + PB1D9 SINE Alu 6 100 -20 6 1339 4252 143 7 17 chr6 98857726 98858128 -50658909 - Lx4B LINE L1 -1096 5962 5589 6 1339 1138 69 14 0 chr6 98858128 98858273 -50658764 - B1_Mm SINE Alu 0 147 1 6 1339 4252 144 28 68 chr6 98858273 98858737 -50658300 - Lx4B LINE L1 -282 5595 5120 6 1339 287 107 50 67 chr6 98858722 98858782 -50658255 + Lx3C LINE L1 5939 5997 -979 6 1339 234 309 14 14 chr6 98858782 98858851 -50658186 + RSINE1 SINE B4 84 152 -13 6 1339 276 287 116 0 chr6 98858917 98859081 -50657956 - L1MEc LINE L1 -4804 1596 1414 5 1339 329 123 27 0 chr6 98859497 98859570 -50657467 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 6 1339 467 275 0 149 chr6 98859577 98859765 -50657272 - RSINE1 SINE B4 0 165 6 6 1339 234 320 0 37 chr6 98860087 98860168 -50656869 - ID4 SINE ID -4 79 2 6 1339 16854 19 0 0 chr6 98860424 98863016 -50654021 - L1Md_T LINE L1 0 6582 3992 6 1339 441 0 0 0 chr6 98863333 98863382 -50653655 + (T)n Simple_repeat Simple_repeat 1 49 0 6 1339 890 48 71 0 chr6 98863382 98863508 -50653529 - B1_Mm SINE Alu 0 147 13 6 1339 532 211 66 22 chr6 98863387 98863523 -50653514 - B4 SINE B4 -71 221 80 6 1339 1680 21 0 5 chr6 98863538 98863731 -50653306 + B2_Mm1a SINE B2 2 193 0 6 1339 225 0 0 0 chr6 98863731 98863756 -50653281 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1339 1215 68 0 0 chr6 98863769 98863916 -50653121 + B1_Mus1 SINE Alu 2 148 0 6 1339 22 94 0 0 chr6 98864155 98864219 -50652818 + AT_rich Low_complexity Low_complexity 1 64 0 6 1339 561 259 69 0 chr6 98865070 98865201 -50651836 + RSINE1 SINE B4 4 143 -22 6 1339 21 0 0 0 chr6 98865231 98865252 -50651785 + AT_rich Low_complexity Low_complexity 1 21 0 6 1339 243 0 0 0 chr6 98866023 98866050 -50650987 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 1339 185 317 83 0 chr6 98866848 98866908 -50650129 + L2b LINE L2 2741 2805 -614 6 1339 200 59 29 0 chr6 98866994 98867028 -50650009 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1339 966 68 0 0 chr6 98867028 98867161 -50649876 - B1_Mm SINE Alu -9 138 6 6 1339 1383 134 8 55 chr6 98870177 98870413 -50646624 + URR1B DNA MER1_type 1 225 0 6 1339 191 358 102 17 chr6 98870608 98870784 -50646253 + L2b LINE L2 3023 3213 -162 6 1339 599 235 0 86 chr6 98874147 98874310 -50642727 + B1F1 SINE Alu 1 149 0 6 1339 686 157 82 0 chr6 98874530 98874664 -50642373 - B1_Mur2 SINE Alu -4 145 1 6 1339 21 0 0 0 chr6 98875839 98875860 -50641177 + AT_rich Low_complexity Low_complexity 1 21 0 6 1339 180 97 0 0 chr6 98876456 98876487 -50640550 + (CTCA)n Simple_repeat Simple_repeat 4 34 0 6 1339 212 59 29 0 chr6 98876877 98876911 -50640126 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1339 24 0 0 0 chr6 98877226 98877250 -50639787 + AT_rich Low_complexity Low_complexity 1 24 0 6 1339 216 200 0 0 chr6 98878021 98878071 -50638966 + A-rich Low_complexity Low_complexity 1 50 0 6 1339 240 111 0 0 chr6 98879114 98879150 -50637887 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 6 1339 189 0 0 0 chr6 98879171 98879192 -50637845 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1339 279 140 0 0 chr6 98879390 98879440 -50637597 + (A)n Simple_repeat Simple_repeat 1 50 0 6 1339 215 169 0 48 chr6 98879982 98880044 -50636993 + T-rich Low_complexity Low_complexity 1 59 0 6 1339 224 192 108 14 chr6 98880599 98880673 -50636364 - MER5A DNA MER1_type -105 84 4 6 1339 306 0 0 0 chr6 98883849 98883883 -50633154 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 6 1339 186 219 0 47 chr6 98888510 98888553 -50628484 + L2b LINE L2 3332 3372 -3 6 1339 186 43 0 0 chr6 98890302 98890325 -50626712 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1339 362 308 0 93 chr6 98890478 98890607 -50626430 - PB1D10 SINE Alu 0 117 1 6 1339 198 0 0 0 chr6 98891780 98891802 -50625235 + (CCCCCA)n Simple_repeat Simple_repeat 6 27 0 6 1339 194 105 26 0 chr6 98892560 98892598 -50624439 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 6 1339 359 271 59 0 chr6 98893913 98893998 -50623039 - PB1D10 SINE Alu -26 91 2 6 1339 180 111 0 0 chr6 98898668 98898695 -50618342 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1339 812 280 58 55 chr6 98898877 98899168 -50617869 + B4A SINE B4 1 292 0 6 1339 195 42 0 0 chr6 98902175 98902199 -50614838 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 6 1339 1176 68 0 0 chr6 98904972 98905118 -50611919 + B1_Mus2 SINE Alu 2 147 0 6 1339 215 100 0 48 chr6 98905312 98905354 -50611683 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 6 1339 188 315 43 33 chr6 98906807 98906899 -50610138 + MIRb SINE MIR 93 185 -83 6 1339 773 177 7 26 chr6 98909229 98909380 -50607657 + URR1A DNA MER1_type 79 226 0 6 1339 201 39 0 0 chr6 98910138 98910164 -50606873 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1339 224 233 117 0 chr6 98910165 98910225 -50606812 - ID SINE ID -156 68 2 6 1339 483 33 0 0 chr6 98910497 98910558 -50606479 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1339 412 272 9 28 chr6 98912188 98912294 -50604743 + PB1D10 SINE Alu 2 105 -12 6 1339 731 193 20 20 chr6 98912794 98912942 -50604095 - B1_Mur1 SINE Alu -1 148 1 6 1339 720 242 90 10 chr6 98912961 98912984 -50604053 - B3 SINE B2 0 216 183 6 1339 189 0 0 0 chr6 98912984 98913005 -50604032 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1339 720 242 90 10 chr6 98913005 98913181 -50603856 - B3 SINE B2 -34 182 2 6 1339 341 366 31 41 chr6 98913528 98913722 -50603315 - MER58B DNA MER1_type 0 341 150 6 1339 252 86 0 0 chr6 98914672 98914707 -50602330 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1339 858 58 45 23 chr6 98915630 98915806 -50601231 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1339 200 152 0 42 chr6 98916900 98916948 -50600089 + G-rich Low_complexity Low_complexity 4 49 0 6 1339 357 43 0 0 chr6 98917228 98917275 -50599762 + (CATA)n Simple_repeat Simple_repeat 2 48 0 6 1339 699 120 0 0 chr6 98917524 98917632 -50599405 + (GA)n Simple_repeat Simple_repeat 1 108 0 6 1339 21 36 0 0 chr6 98918829 98918857 -50598180 + AT_rich Low_complexity Low_complexity 1 28 0 6 1339 210 37 0 0 chr6 98920133 98920160 -50596877 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 6 1339 209 75 56 19 chr6 98920327 98920381 -50596656 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 6 1339 34 0 0 0 chr6 98921297 98921331 -50595706 + AT_rich Low_complexity Low_complexity 1 34 0 6 1339 180 0 0 0 chr6 98922810 98922830 -50594207 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1339 229 194 28 69 chr6 98923171 98923243 -50593794 + ID4 SINE ID 1 69 -14 6 1339 1117 63 28 7 chr6 98923734 98923877 -50593160 + B1_Mm SINE Alu 1 146 -1 6 1339 289 272 97 62 chr6 98924963 98925108 -50591929 + MIRc SINE MIR 67 216 -52 6 1339 269 323 109 75 chr6 98925807 98926008 -50591029 + MLT1K LTR MaLR 380 587 -8 6 1339 198 288 60 48 chr6 98926158 98926242 -50590795 - L2b LINE L2 -185 3190 3106 6 1339 1747 213 58 0 chr6 98927093 98927441 -50589596 + ORR1C1 LTR MaLR 1 368 -10 6 1339 185 94 31 0 chr6 98928354 98928386 -50588651 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 6 1339 354 107 0 0 chr6 98929169 98929225 -50587812 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1339 713 246 32 46 chr6 98930036 98930253 -50586784 - B3 SINE B2 0 216 3 6 1339 209 200 0 0 chr6 98930738 98930788 -50586249 + T-rich Low_complexity Low_complexity 1 50 0 6 1339 240 286 0 0 chr6 98931827 98931883 -50585154 + CT-rich Low_complexity Low_complexity 3 58 0 6 1339 464 269 27 18 chr6 98931883 98931993 -50585044 - ID_B1 SINE B4 -30 194 84 6 1339 265 236 26 53 chr6 98932636 98932712 -50584325 - ID4 SINE ID -8 75 2 6 1339 654 294 93 19 chr6 98933269 98933627 -50583410 - L1MB8 LINE L1 -27 6151 5769 6 1339 381 200 10 80 chr6 98933635 98933836 -50583201 - RMER17C LTR ERVK -139 271 85 6 1339 25 0 0 0 chr6 98933978 98934003 -50583034 + AT_rich Low_complexity Low_complexity 1 25 0 6 1339 760 296 94 7 chr6 98934105 98934413 -50582624 - Lx9 LINE L1 -215 7429 7121 6 1339 232 195 0 0 chr6 98934938 98934979 -50582058 - L1MB8 LINE L1 -804 5380 5340 6 1339 780 283 139 11 chr6 98934984 98935438 -50581599 - L1MB8 LINE L1 -783 5363 4852 6 1339 207 184 0 0 chr6 98936401 98936439 -50580598 + GA-rich Low_complexity Low_complexity 3 40 0 6 1339 735 260 6 39 chr6 98936979 98937159 -50579878 - B4A SINE B4 -115 177 4 6 1339 803 174 144 17 chr6 98938227 98938408 -50578629 + B3 SINE B2 1 204 -12 6 1339 320 341 62 8 chr6 98938560 98938690 -50578347 - MER5A1 DNA MER1_type -5 161 25 6 1339 210 37 0 0 chr6 98938941 98938968 -50578069 + (CATA)n Simple_repeat Simple_repeat 2 28 0 6 1339 304 361 45 0 chr6 98941908 98942041 -50574996 + L2c LINE L2 3241 3379 -8 6 1339 190 300 83 48 chr6 98942318 98942402 -50574635 + L2b LINE L2 3010 3096 -279 6 1339 558 157 0 0 chr6 98943191 98943293 -50573744 + GA-rich Low_complexity Low_complexity 1 102 0 6 1339 288 0 0 0 chr6 98943622 98943654 -50573383 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1339 252 86 0 0 chr6 98943668 98943703 -50573334 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 6 1339 243 0 0 0 chr6 98944000 98944027 -50573010 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1339 342 0 0 0 chr6 98944027 98944064 -50572973 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1339 23 33 0 0 chr6 98947365 98947395 -50569642 + AT_rich Low_complexity Low_complexity 1 30 0 6 1339 193 375 108 0 chr6 98948609 98948729 -50568308 + MIRb SINE MIR 17 152 -116 6 1339 351 0 0 0 chr6 98950328 98950367 -50566670 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 7 1339 1050 192 22 18 chr6 98956218 98956441 -50560596 + URR1A DNA MER1_type 2 225 -1 7 1339 197 65 0 31 chr6 98956657 98956689 -50560348 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 7 1339 272 278 106 44 chr6 98958125 98958238 -50558799 + PB1D7 SINE Alu 1 120 0 7 1339 194 150 0 24 chr6 98958262 98958303 -50558734 + GA-rich Low_complexity Low_complexity 4 43 0 7 1339 821 199 17 17 chr6 98958681 98958860 -50558177 + B3 SINE B2 38 216 0 7 1339 1010 179 85 15 chr6 98959114 98959313 -50557724 + B3 SINE B2 4 216 0 7 1340 331 295 0 10 chr6 98959360 98959456 -50557581 + ID_B1 SINE B4 82 176 -48 7 1340 180 176 0 0 chr6 98959459 98959493 -50557544 + GA-rich Low_complexity Low_complexity 5 38 0 7 1340 189 0 0 0 chr6 98960176 98960197 -50556840 + (G)n Simple_repeat Simple_repeat 1 21 0 7 1340 180 111 0 0 chr6 98961414 98961441 -50555596 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1340 22 0 0 0 chr6 98961546 98961568 -50555469 + AT_rich Low_complexity Low_complexity 1 22 0 7 1340 210 204 0 115 chr6 98966813 98966874 -50550163 - ID SINE ID -138 86 33 7 1340 225 0 0 0 chr6 98967030 98967055 -50549982 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1340 293 155 0 17 chr6 98972557 98972616 -50544421 + (TTA)n Simple_repeat Simple_repeat 2 59 0 7 1340 21 0 0 0 chr6 98973117 98973138 -50543899 + AT_rich Low_complexity Low_complexity 1 21 0 7 1340 264 185 0 0 chr6 98973556 98973610 -50543427 + A-rich Low_complexity Low_complexity 1 54 0 7 1340 198 0 0 0 chr6 98975208 98975230 -50541807 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1340 603 92 0 0 chr6 98976592 98976679 -50540358 + (TA)n Simple_repeat Simple_repeat 2 88 0 7 1340 432 0 0 0 chr6 98977582 98977630 -50539407 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1340 219 288 0 0 chr6 98978087 98978146 -50538891 + GA-rich Low_complexity Low_complexity 2 60 0 7 1340 27 49 0 0 chr6 98978181 98978222 -50538815 + GC_rich Low_complexity Low_complexity 1 41 0 7 1340 240 252 47 39 chr6 98978285 98978413 -50538624 + (CCCCG)n Simple_repeat Simple_repeat 3 131 0 7 1340 23 33 0 0 chr6 98980002 98980032 -50537005 + AT_rich Low_complexity Low_complexity 1 30 0 7 1340 589 231 66 15 chr6 98980959 98981095 -50535942 + ID_B1 SINE B4 82 224 0 7 1340 22 0 0 0 chr6 98983050 98983072 -50533965 + AT_rich Low_complexity Low_complexity 1 22 0 7 1340 192 284 0 136 chr6 98984633 98984751 -50532286 + MIR SINE MIR 30 131 -77 7 1340 822 209 13 0 chr6 98984867 98985020 -50532017 + B3A SINE B2 2 156 -42 7 1340 468 0 0 0 chr6 98985025 98985077 -50531960 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1340 372 264 115 8 chr6 98985105 98985227 -50531810 + ID_B1 SINE B4 90 224 0 7 1340 400 209 36 0 chr6 98985367 98985477 -50531560 + PB1D10 SINE Alu 3 116 -1 7 1340 382 210 24 24 chr6 98986932 98987059 -50529978 + HAL1-2a_MD LINE L1 2353 2479 -545 7 1340 1482 53 32 0 chr6 98987304 98987491 -50529546 - B2_Mm1a SINE B2 0 193 1 7 1340 712 180 6 17 chr6 98990527 98990708 -50526329 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1340 321 270 0 0 chr6 98990683 98990794 -50526243 + (TATATG)n Simple_repeat Simple_repeat 6 116 0 7 1340 204 214 0 0 chr6 98990796 98990838 -50526199 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1340 4885 45 2 7 chr6 98991271 98991870 -50525167 - L1Md_F2 LINE L1 -3 6579 5984 7 1340 1625 37 0 11 chr6 98991870 98992061 -50524976 - B2_Mm1a SINE B2 -4 189 1 7 1340 251 234 82 47 chr6 98992146 98992231 -50524806 + PB1D10 SINE Alu 30 117 0 7 1340 384 22 0 0 chr6 98992242 98992287 -50524750 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1340 210 171 0 0 chr6 98992361 98992396 -50524641 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7 1340 555 198 0 25 chr6 98993199 98993318 -50523719 - PB1D9 SINE Alu -3 117 2 7 1340 662 267 167 4 chr6 98993355 98993588 -50523449 - B4 SINE B4 -15 277 7 7 1340 710 237 38 85 chr6 98994862 98995067 -50521970 + B4A SINE B4 35 229 -63 7 1340 313 318 26 0 chr6 98995067 98995162 -50521875 + ID4 SINE ID 2 98 -54 7 1340 195 42 0 0 chr6 98995203 98995227 -50521810 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1340 222 114 68 0 chr6 98995228 98995272 -50521765 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 7 1340 2839 66 0 6 chr6 98995368 98995732 -50521305 + L1_Mus1 LINE L1 6205 6566 -1 7 1340 368 264 54 54 chr6 98995908 98996115 -50520922 - MIR3 SINE MIR -1 207 4 7 1340 338 335 23 40 chr6 98996385 98996559 -50520478 - MER3 DNA MER1_type -6 203 33 7 1340 355 315 30 30 chr6 98996561 98996692 -50520345 + RSINE1 SINE B4 15 145 -20 7 1340 385 330 159 16 chr6 98996924 98997294 -50519743 + MLT1K LTR MaLR 96 518 -77 7 1340 315 0 0 0 chr6 98997792 98997827 -50519210 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1340 342 91 0 0 chr6 98999844 98999899 -50517138 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 7 1340 935 63 0 0 chr6 99000015 99000142 -50516895 + B1_Mus1 SINE Alu 22 148 0 1 1340 360 0 0 0 chr6 99000954 99000994 -50516043 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1340 222 289 8 73 chr6 99001046 99001169 -50515868 + PB1D10 SINE Alu 2 116 -1 3 1340 427 144 4 86 chr6 99001843 99001947 -50515090 - B1_Mur1 SINE Alu 0 149 25 4 1340 365 298 216 51 chr6 99002034 99002289 -50514748 + MLT1F LTR MaLR 203 499 -49 5 1340 414 0 0 0 chr6 99002556 99002602 -50514435 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 1340 231 279 75 37 chr6 99002886 99003020 -50514017 - MER102a DNA MER1_type -187 143 5 7 1340 258 95 0 0 chr6 99003643 99003685 -50513352 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1340 433 248 10 19 chr6 99004776 99004879 -50512158 + MER3 DNA MER1_type 2 103 -106 9 1340 866 229 19 19 chr6 99004886 99005100 -50511937 + B3 SINE B2 3 216 0 1 1340 1222 94 67 0 chr6 99005745 99005925 -50511112 + B2_Mm1t SINE B2 2 193 0 1 1340 207 167 0 0 chr6 99006017 99006053 -50510984 + CT-rich Low_complexity Low_complexity 1 36 0 1 1340 396 40 0 0 chr6 99006053 99006103 -50510934 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 1 1340 183 80 0 0 chr6 99006375 99006400 -50510637 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1340 1960 261 54 10 chr6 99006420 99006901 -50510136 + Lx5 LINE L1 6475 6976 -74 1 1340 220 276 66 0 chr6 99007457 99007533 -50509504 + MER91B DNA Tip100 40 120 -70 1 1340 1115 261 49 46 chr6 99007849 99008215 -50508822 + MTEa LTR MaLR 1 367 -12 1 1340 1272 219 50 10 chr6 99008311 99008611 -50508426 + MER58B DNA MER1_type 29 340 -1 1 1340 804 269 40 18 chr6 99009843 99009919 -50507118 + B4 SINE B4 3 80 -212 1 1340 1059 117 0 0 chr6 99009919 99010081 -50506956 + (GAGAA)n Simple_repeat Simple_repeat 4 165 0 2 1340 804 269 40 18 chr6 99010081 99010227 -50506810 + B4 SINE B4 81 230 -62 1 1340 324 343 57 10 chr6 99011132 99011341 -50505696 - MIRb SINE MIR -6 262 44 2 1340 186 43 0 0 chr6 99011608 99011631 -50505406 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1340 726 208 0 0 chr6 99011839 99011998 -50505039 + (TA)n Simple_repeat Simple_repeat 1 159 0 2 1340 378 0 0 0 chr6 99012351 99012393 -50504644 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1340 453 303 117 42 chr6 99014709 99014921 -50502116 + B4A SINE B4 3 226 -66 2 1340 388 287 45 60 chr6 99014921 99015098 -50501939 + B3A SINE B2 2 181 -17 2 1340 279 79 0 0 chr6 99015098 99015136 -50501901 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 1340 388 287 45 60 chr6 99015136 99015158 -50501879 + B3A SINE B2 182 198 0 2 1340 453 303 117 42 chr6 99015158 99015210 -50501827 + B4A SINE B4 227 287 -5 2 1340 492 18 0 0 chr6 99015937 99015994 -50501043 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1340 489 110 0 0 chr6 99016699 99016772 -50500265 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 2 1340 882 245 10 10 chr6 99016772 99016974 -50500063 - B3 SINE B2 0 216 15 3 1340 603 160 28 6 chr6 99017062 99017238 -50499799 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1340 29 0 0 0 chr6 99018743 99018772 -50498265 + AT_rich Low_complexity Low_complexity 1 29 0 3 1340 2199 165 29 20 chr6 99018981 99019390 -50497647 + MTC LTR MaLR 1 413 -8 3 1340 351 241 97 110 chr6 99019812 99019966 -50497071 - RSINE1 SINE B4 -12 153 2 3 1340 210 91 0 0 chr6 99020032 99020065 -50496972 + (TGG)n Simple_repeat Simple_repeat 3 35 0 3 1340 561 198 0 0 chr6 99020066 99020177 -50496860 + PB1D9 SINE Alu 10 120 0 3 1340 367 35 35 0 chr6 99022107 99022164 -50494873 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 3 1340 1102 52 15 0 chr6 99022164 99022299 -50494738 - B1_Mm SINE Alu -10 137 1 3 1340 556 269 99 45 chr6 99022824 99023046 -50493991 + B4A SINE B4 1 234 -58 3 1340 443 158 104 10 chr6 99023072 99023168 -50493869 + B1_Mur1 SINE Alu 45 149 0 4 1340 321 293 36 65 chr6 99023168 99023240 -50493797 + B4A SINE B4 130 292 0 4 1340 21 0 0 0 chr6 99024264 99024285 -50492752 + AT_rich Low_complexity Low_complexity 1 21 0 4 1340 574 318 95 35 chr6 99024846 99024909 -50492128 + L1MA4 LINE L1 5607 5669 -631 4 1340 1500 185 78 17 chr6 99024909 99025256 -50491781 + ORR1D2 LTR MaLR 1 368 -2 4 1340 574 318 95 35 chr6 99025256 99025560 -50491477 + L1MA4 LINE L1 5670 5996 -304 4 1340 189 0 0 0 chr6 99025712 99025733 -50491304 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1340 843 64 0 0 chr6 99025899 99026009 -50491028 + (CTG)n Simple_repeat Simple_repeat 1 110 0 4 1340 521 305 30 0 chr6 99026634 99026798 -50490239 + ID_B1 SINE B4 3 171 -53 4 1340 678 205 0 0 chr6 99026809 99027054 -50489983 + (TG)n Simple_repeat Simple_repeat 1 245 0 4 1340 1258 92 29 0 chr6 99027558 99027731 -50489306 + B2_Mm1t SINE B2 2 179 -14 4 1340 260 127 368 19 chr6 99027763 99027869 -50489168 + B2_Mm2 SINE B2 47 189 -6 5 1340 948 82 0 110 chr6 99027870 99028034 -50489003 + B1_Mus1 SINE Alu 2 147 -1 5 1340 570 244 35 59 chr6 99028321 99028491 -50488546 - B3A SINE B2 -19 179 14 5 1340 189 0 0 0 chr6 99029619 99029640 -50487397 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1340 201 121 0 0 chr6 99029771 99029804 -50487233 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1340 1076 22 0 0 chr6 99029901 99030037 -50487000 + B1_Mus2 SINE Alu 12 147 0 5 1340 324 259 80 80 chr6 99030070 99030221 -50486816 - RSINE1 SINE B4 0 165 15 5 1340 213 339 0 0 chr6 99030794 99030850 -50486187 + B4A SINE B4 87 142 -150 5 1340 230 235 0 19 chr6 99031190 99031242 -50485795 + GA-rich Low_complexity Low_complexity 3 53 0 5 1340 802 242 10 58 chr6 99032928 99033134 -50483903 + B3 SINE B2 7 202 -14 5 1340 319 168 0 21 chr6 99033419 99033516 -50483521 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 1340 360 296 8 77 chr6 99033520 99033637 -50483400 - B4A SINE B4 0 292 184 6 1340 226 301 21 21 chr6 99033657 99033752 -50483285 - B4 SINE B4 -193 99 5 6 1340 210 105 0 0 chr6 99034387 99034425 -50482612 + (CAT)n Simple_repeat Simple_repeat 1 38 0 6 1340 22 0 0 0 chr6 99034869 99034891 -50482146 + AT_rich Low_complexity Low_complexity 1 22 0 6 1340 488 288 34 127 chr6 99034900 99035222 -50481815 - AmnSINE1 SINE SINE -283 292 1 6 1340 591 254 62 34 chr6 99035322 99035501 -50481536 + B4A SINE B4 41 224 -68 6 1340 549 158 39 10 chr6 99035505 99035607 -50481430 + B3 SINE B2 1 105 -111 6 1340 792 197 18 13 chr6 99036143 99036416 -50480621 + GA-rich Low_complexity Low_complexity 1 274 0 6 1340 357 117 0 0 chr6 99036522 99036582 -50480455 + (GGA)n Simple_repeat Simple_repeat 2 61 0 6 1340 647 113 9 0 chr6 99036596 99036702 -50480335 - L1_Mur3 LINE L1 -561 5319 5213 6 1340 866 182 193 0 chr6 99036722 99036903 -50480134 + B3 SINE B2 1 216 0 7 1340 539 233 22 22 chr6 99037105 99037241 -50479796 + B1_Mur3 SINE Alu 2 137 -12 7 1340 189 303 131 0 chr6 99037539 99037638 -50479399 - MIRc SINE MIR -89 179 68 7 1340 973 292 52 46 chr6 99038348 99038807 -50478230 + Lx9 LINE L1 6972 7433 -211 7 1340 324 0 0 0 chr6 99038836 99038872 -50478165 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1340 674 197 121 0 chr6 99039015 99039147 -50477890 - B1_Mur2 SINE Alu -1 148 1 7 1340 383 335 16 92 chr6 99039359 99039543 -50477494 - B4 SINE B4 -121 171 2 7 1340 387 310 0 0 chr6 99039587 99039687 -50477350 - B1_Mus2 SINE Alu -44 103 4 7 1340 523 319 22 0 chr6 99039888 99040073 -50476964 + ID_B1 SINE B4 7 195 -29 7 1340 601 325 47 67 chr6 99040705 99041002 -50476035 + B4A SINE B4 1 291 -1 7 1340 267 31 0 0 chr6 99041012 99041044 -50475993 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1340 436 59 0 29 chr6 99041117 99041187 -50475850 + (TCCC)n Simple_repeat Simple_repeat 2 69 0 8 1340 207 0 0 0 chr6 99041397 99041420 -50475617 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1340 476 291 52 0 chr6 99041457 99041591 -50475446 + B3A SINE B2 2 142 -56 8 1340 430 248 0 18 chr6 99042117 99042228 -50474809 + MIR SINE MIR 60 168 -94 8 1340 342 0 0 0 chr6 99043797 99043835 -50473202 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1340 405 0 0 0 chr6 99043835 99043879 -50473158 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1340 241 328 0 0 chr6 99043881 99043942 -50473095 - ID4 SINE ID -3 80 20 8 1340 224 277 169 0 chr6 99043885 99043950 -50473087 - ID SINE ID -147 77 2 8 1340 243 0 0 0 chr6 99044458 99044485 -50472552 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 8 1340 225 209 0 0 chr6 99045934 99045977 -50471060 + A-rich Low_complexity Low_complexity 1 43 0 9 1340 414 0 0 0 chr6 99046676 99046722 -50470315 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 1340 207 0 0 0 chr6 99046954 99046977 -50470060 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1340 287 78 20 0 chr6 99051112 99051163 -50465874 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 9 1340 207 0 0 0 chr6 99051792 99051815 -50465222 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1340 32 26 0 0 chr6 99054357 99054396 -50462641 + AT_rich Low_complexity Low_complexity 1 39 0 9 1340 994 183 118 5 chr6 99055424 99055627 -50461410 + URR1A DNA MER1_type 1 226 0 9 1340 334 282 19 0 chr6 99056008 99056111 -50460926 + Tigger14a DNA MER2_type 49 153 -171 9 1340 411 263 102 0 chr6 99056698 99056816 -50460221 + B1F SINE Alu 20 149 0 9 1340 399 308 66 84 chr6 99057697 99058077 -50458960 + MLT1E3 LTR MaLR 4 376 -248 9 1340 216 240 0 0 chr6 99058308 99058358 -50458679 + C-rich Low_complexity Low_complexity 1 50 0 1 1340 796 244 50 27 chr6 99058464 99058683 -50458354 - ID_B1 SINE B4 0 224 1 1 1340 726 174 21 0 chr6 99059468 99059612 -50457425 - B1_Mur2 SINE Alu 0 149 3 1 1340 818 290 59 33 chr6 99059613 99059916 -50457121 + Tigger7 DNA MER2_type 100 410 -2081 1 1340 287 238 93 23 chr6 99060150 99060236 -50456801 - B1_Mur2 SINE Alu -21 128 37 1 1340 2229 64 26 3 chr6 99060316 99060628 -50456409 - ORR1A2 LTR MaLR -8 319 1 1 1340 443 228 107 57 chr6 99060881 99061058 -50455979 + MTD LTR MaLR 220 405 -14 1 1340 239 232 18 0 chr6 99061554 99061610 -50455427 + MTEb LTR MaLR 316 372 -7 1 1340 198 0 0 0 chr6 99061844 99061866 -50455171 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1340 260 267 0 16 chr6 99061900 99061961 -50455076 + CT-rich Low_complexity Low_complexity 1 60 0 1 1340 249 169 121 26 chr6 99061963 99062046 -50454991 - L1MC LINE L1 -644 5598 5511 1 1340 820 229 40 49 chr6 99062164 99062389 -50454648 - ID_B1 SINE B4 -1 223 1 1 1340 556 191 19 0 chr6 99062398 99062503 -50454534 - B1F2 SINE Alu -1 148 42 1 1340 244 214 0 18 chr6 99062453 99062510 -50454527 - 4.5SRNA scRNA scRNA -6 88 33 1 1340 252 222 0 0 chr6 99062510 99062582 -50454455 + CT-rich Low_complexity Low_complexity 2 73 0 1 1340 387 0 0 0 chr6 99064024 99064067 -50452970 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1340 226 233 32 32 chr6 99064136 99064198 -50452839 + PB1D10 SINE Alu 45 106 -11 1 1340 886 269 21 4 chr6 99064659 99064894 -50452143 - Lx7 LINE L1 -528 7168 6930 1 1340 350 239 8 103 chr6 99065233 99065359 -50451678 - PB1D10 SINE Alu -1 116 3 1 1340 350 306 167 17 chr6 99065863 99066103 -50450934 - B4A SINE B4 -3 289 14 1 1340 1150 82 0 0 chr6 99066290 99066437 -50450600 + B1_Mus1 SINE Alu 2 148 0 1 1340 257 68 23 0 chr6 99066443 99066487 -50450550 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 1 1340 620 228 139 26 chr6 99066694 99066888 -50450149 + B3 SINE B2 1 216 0 1 1340 1150 83 46 34 chr6 99066929 99067104 -50449933 + B2_Mm2 SINE B2 2 178 -17 1 1340 241 291 0 0 chr6 99067313 99067368 -50449669 + polypyrimidine Low_complexity Low_complexity 4 58 0 1 1340 376 247 4 17 chr6 99067385 99067484 -50449553 - PB1 SINE Alu -27 100 1 1 1340 475 294 188 8 chr6 99068369 99068609 -50448428 - B4A SINE B4 -7 285 3 1 1340 610 160 0 0 chr6 99069157 99069263 -50447774 - B1_Mur3 SINE Alu -43 106 1 1 1340 200 73 0 68 chr6 99069860 99069904 -50447133 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1 1340 228 233 40 14 chr6 99069931 99070005 -50447032 + MLT1E LTR MaLR 306 381 -272 1 1340 248 274 103 9 chr6 99071704 99071811 -50445226 - L1MA6 LINE L1 -1 6299 6183 1 1340 246 32 0 0 chr6 99071812 99071843 -50445194 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1340 330 275 67 22 chr6 99072203 99072337 -50444700 + MIRb SINE MIR 93 232 -36 1 1340 277 254 14 0 chr6 99073058 99073129 -50443908 + ID4_ SINE ID 1 72 -11 1 1340 445 243 125 78 chr6 99074571 99074763 -50442274 + B3 SINE B2 1 201 -15 1 1340 418 332 62 4 chr6 99075342 99075569 -50441468 + L3b LINE CR1 12 251 -231 1 1340 540 30 0 0 chr6 99076383 99076449 -50440588 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1340 1119 204 96 32 chr6 99076779 99077124 -50439913 + ORR1D2 LTR MaLR 4 370 0 1 1340 356 291 112 26 chr6 99077128 99077280 -50439757 - B4 SINE B4 -45 247 83 1 1340 226 276 62 31 chr6 99077403 99077500 -50439537 + MT2B LTR ERVL 151 250 -351 1 1340 372 216 19 0 chr6 99077422 99077502 -50439535 + PB1D10 SINE Alu 11 96 -21 1 1340 453 36 0 0 chr6 99077508 99077563 -50439474 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 1 1340 364 284 192 28 chr6 99078284 99078498 -50438539 + B4 SINE B4 1 249 -43 1 1340 3559 25 0 0 chr6 99078627 99079023 -50438014 + MTA_Mm LTR MaLR 1 396 0 1 1340 455 129 0 0 chr6 99079872 99079942 -50437095 - RMER1C Other Other -2 1340 1271 1 1340 240 35 0 0 chr6 99081077 99081106 -50435931 + (CAG)n Simple_repeat Simple_repeat 1 29 0 1 1340 22 0 0 0 chr6 99082289 99082311 -50434726 + AT_rich Low_complexity Low_complexity 1 22 0 1 1340 447 106 0 0 chr6 99083725 99083791 -50433246 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1 1340 206 77 0 0 chr6 99083792 99083818 -50433219 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1 1340 186 43 0 0 chr6 99085303 99085326 -50431711 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1 1340 231 62 0 0 chr6 99089278 99089310 -50427727 - MIR SINE MIR -64 144 113 1 1340 297 0 0 0 chr6 99090130 99090163 -50426874 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1341 313 216 68 0 chr6 99090834 99090922 -50426115 - PB1 SINE Alu -16 111 18 1 1341 429 288 24 0 chr6 99091493 99091618 -50425419 + RSINE1 SINE B4 2 129 -36 1 1341 1291 89 22 11 chr6 99091706 99091888 -50425149 + B2_Mm2 SINE B2 3 186 -9 1 1341 255 212 22 121 chr6 99091908 99091999 -50425038 + ID4 SINE ID 1 82 -1 1 1341 237 135 0 0 chr6 99092545 99092597 -50424440 + (A)n Simple_repeat Simple_repeat 1 52 0 1 1341 311 319 0 0 chr6 99094755 99094846 -50422191 + B3A SINE B2 22 112 -86 1 1341 351 0 0 0 chr6 99094846 99094885 -50422152 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1341 414 278 9 9 chr6 99095139 99095248 -50421789 + PB1D10 SINE Alu 2 110 -7 1 1341 782 170 6 64 chr6 99095331 99095488 -50421549 + B1_Mur3 SINE Alu 1 148 -1 1 1341 26 0 0 0 chr6 99095916 99095942 -50421095 + AT_rich Low_complexity Low_complexity 1 26 0 1 1341 188 206 0 0 chr6 99097406 99097440 -50419597 - MIR SINE MIR -117 145 112 1 1341 524 152 0 10 chr6 99097463 99097563 -50419474 + T-rich Low_complexity Low_complexity 2 100 0 1 1341 1184 74 0 0 chr6 99097570 99097718 -50419319 - B1_Mus1 SINE Alu 0 148 1 1 1341 190 314 77 0 chr6 99098864 99098997 -50418040 - MIRm SINE MIR -123 153 1 1 1341 198 0 0 0 chr6 99099741 99099763 -50417274 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1341 31 0 0 0 chr6 99099844 99099875 -50417162 + AT_rich Low_complexity Low_complexity 1 31 0 1 1341 261 252 20 0 chr6 99101020 99101171 -50415866 + (CA)n Simple_repeat Simple_repeat 1 154 0 1 1341 979 266 84 22 chr6 99101345 99101702 -50415335 + MTEb LTR MaLR 1 379 0 1 1341 22 0 0 0 chr6 99102411 99102433 -50414604 + AT_rich Low_complexity Low_complexity 1 22 0 1 1341 561 280 20 70 chr6 99102994 99103194 -50413843 + B4 SINE B4 31 220 -72 1 1341 1180 50 0 0 chr6 99103348 99103488 -50413549 + B1_Mus1 SINE Alu 1 140 -8 1 1341 183 271 0 0 chr6 99104041 99104111 -50412926 + CT-rich Low_complexity Low_complexity 1 70 0 1 1341 345 209 10 104 chr6 99104115 99104211 -50412826 - ID_B1 SINE B4 0 224 138 1 1341 264 353 21 50 chr6 99105102 99105242 -50411795 + MTEa LTR MaLR 1 136 -223 1 1341 3947 57 0 2 chr6 99106992 99107468 -50409569 + MT2C_Mm LTR ERVL 1 475 0 1 1341 882 210 119 25 chr6 99107781 99108016 -50409021 + MTEa LTR MaLR 122 378 -1 1 1341 284 327 26 45 chr6 99108016 99108166 -50408871 - MER2 DNA MER2_type -47 298 152 1 1341 405 302 0 16 chr6 99111651 99111772 -50405265 + ID_B1 SINE B4 102 220 -4 1 1341 717 88 0 0 chr6 99113067 99113169 -50403868 + (GA)n Simple_repeat Simple_repeat 1 102 0 1 1341 320 329 0 0 chr6 99113907 99113989 -50403048 + ID2 SINE ID 1 82 -1 1 1341 279 0 0 0 chr6 99114057 99114088 -50402949 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1341 443 205 96 49 chr6 99114134 99114269 -50402768 - PB1D10 SINE Alu 0 149 9 1 1341 256 280 13 13 chr6 99114482 99114558 -50402479 + RSINE1 SINE B4 3 78 -87 1 1341 246 125 0 0 chr6 99115508 99115556 -50401481 + (CAAAA)n Simple_repeat Simple_repeat 1 48 0 1 1341 809 221 41 16 chr6 99115974 99116177 -50400860 - B3 SINE B2 -22 194 8 1 1341 257 51 0 25 chr6 99117527 99117567 -50399470 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1341 189 94 0 0 chr6 99118180 99118212 -50398825 + (CGGA)n Simple_repeat Simple_repeat 2 33 0 1 1341 321 68 0 0 chr6 99118248 99118292 -50398745 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1341 1185 50 0 0 chr6 99118292 99118433 -50398604 - B1_Mus2 SINE Alu -6 141 1 1 1341 1191 41 14 0 chr6 99118462 99118607 -50398430 - B1_Mm SINE Alu 0 147 1 1 1341 466 233 122 209 chr6 99120274 99120496 -50396541 + B4 SINE B4 1 213 -79 1 1341 2361 71 3 3 chr6 99120496 99120808 -50396229 - L1_Mus2 LINE L1 0 6566 6255 1 1341 466 233 122 209 chr6 99120808 99120905 -50396132 + B4 SINE B4 214 292 0 1 1341 225 108 0 0 chr6 99120906 99120943 -50396094 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1341 404 269 19 0 chr6 99121333 99121437 -50395600 - PB1D10 SINE Alu -7 110 5 1 1341 249 196 0 0 chr6 99125810 99125861 -50391176 + CT-rich Low_complexity Low_complexity 1 51 0 1 1341 240 273 112 32 chr6 99126611 99126736 -50390301 - MER113 DNA MER1_type -272 249 115 1 1341 500 269 37 31 chr6 99126738 99126899 -50390138 + RSINE1 SINE B4 3 164 -1 1 1341 374 57 19 0 chr6 99127735 99127788 -50389249 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1341 342 0 0 0 chr6 99129533 99129571 -50387466 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1341 396 0 0 0 chr6 99129634 99129678 -50387359 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 2 1341 219 323 59 20 chr6 99129726 99129928 -50387109 - L2a LINE L2 -4 3422 3213 2 1341 210 149 255 0 chr6 99129942 99129989 -50387048 + MIRb SINE MIR 195 253 -15 2 1341 493 295 78 6 chr6 99130703 99130870 -50386167 - B3A SINE B2 -18 180 2 2 1341 1108 122 66 0 chr6 99131569 99131750 -50385287 + B2_Mm2 SINE B2 1 193 -2 2 1341 430 236 60 120 chr6 99131759 99131942 -50385095 + B4 SINE B4 121 292 0 2 1341 366 23 0 0 chr6 99132044 99132087 -50384950 + (TTTTC)n Simple_repeat Simple_repeat 1 43 0 2 1341 423 0 0 0 chr6 99132088 99132135 -50384902 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1341 234 297 141 68 chr6 99132331 99132508 -50384529 - MER2 DNA MER2_type -139 206 17 2 1341 569 311 27 11 chr6 99133242 99133427 -50383610 - B4A SINE B4 -49 243 56 2 1341 1014 276 42 21 chr6 99133974 99134311 -50382726 + MTEa LTR MaLR 28 371 -8 2 1341 226 312 0 79 chr6 99134493 99134632 -50382405 + Charlie5 DNA MER1_type 3 130 -2494 2 1341 329 247 91 45 chr6 99134720 99134919 -50382118 + Charlie5 DNA MER1_type 2403 2610 -14 2 1341 354 235 0 0 chr6 99135191 99135293 -50381744 + (TGGA)n Simple_repeat Simple_repeat 3 104 0 2 1341 191 300 67 0 chr6 99135825 99135885 -50381152 + L2b LINE L2 3311 3374 -1 2 1341 263 235 11 34 chr6 99135997 99136085 -50380952 - PB1 SINE Alu 0 127 42 2 1341 355 297 54 8 chr6 99137402 99137531 -50379506 + B1F SINE Alu 9 143 -6 2 1341 257 307 9 36 chr6 99138137 99138330 -50378707 + CT-rich Low_complexity Low_complexity 1 187 0 2 1341 705 106 0 0 chr6 99140497 99140601 -50376436 + (TCCC)n Simple_repeat Simple_repeat 2 105 0 2 1341 414 0 0 0 chr6 99141392 99141438 -50375599 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1341 643 283 76 25 chr6 99142258 99142534 -50374503 + B4 SINE B4 3 292 0 2 1341 276 102 0 0 chr6 99143035 99143084 -50373953 + (A)n Simple_repeat Simple_repeat 1 49 0 2 1341 256 357 78 45 chr6 99144213 99144392 -50372645 + MER117 DNA MER1_type 12 196 -1 2 1341 216 97 0 0 chr6 99144506 99144537 -50372500 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1341 1257 85 39 6 chr6 99144962 99145140 -50371897 - B2_Mm1a SINE B2 -9 184 1 2 1341 308 170 19 0 chr6 99145165 99145218 -50371819 - B1F SINE Alu -10 139 86 2 1341 302 256 117 88 chr6 99146649 99146786 -50370251 + B1F2 SINE Alu 3 143 -6 2 1341 511 284 8 0 chr6 99146663 99146797 -50370240 + B4 SINE B4 97 231 -61 2 1341 432 0 0 0 chr6 99146831 99146879 -50370158 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1341 280 263 79 0 chr6 99147218 99147294 -50369743 + PB1D10 SINE Alu 4 85 -32 2 1341 278 318 63 9 chr6 99147294 99147323 -50369714 + ID_B1 SINE B4 96 195 -29 2 1341 319 205 22 43 chr6 99148112 99148204 -50368833 + RSINE1 SINE B4 4 93 -72 2 1341 186 43 0 0 chr6 99150165 99150188 -50366849 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2 1341 528 16 0 0 chr6 99150944 99151005 -50366032 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1341 288 0 0 0 chr6 99152375 99152407 -50364630 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1341 216 0 0 0 chr6 99153124 99153148 -50363889 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1341 207 0 0 0 chr6 99153884 99153907 -50363130 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1341 206 81 27 0 chr6 99154027 99154064 -50362973 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 2 1341 234 195 26 13 chr6 99158018 99158096 -50358941 + GA-rich Low_complexity Low_complexity 2 80 0 2 1341 410 308 25 6 chr6 99158576 99158733 -50358304 - MIR SINE MIR -99 163 4 2 1341 252 226 35 23 chr6 99158733 99158819 -50358218 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1341 298 159 6 79 chr6 99158828 99158992 -50358045 + (CATATA)n Simple_repeat Simple_repeat 5 156 0 2 1341 277 287 28 28 chr6 99159109 99159288 -50357749 + (TA)n Simple_repeat Simple_repeat 1 179 0 2 1341 296 269 60 102 chr6 99160167 99160333 -50356704 - MIRb SINE MIR -74 194 32 2 1341 704 222 193 6 chr6 99160757 99160938 -50356099 + B3 SINE B2 2 216 0 2 1341 653 260 21 76 chr6 99160979 99161216 -50355821 + ID_B1 SINE B4 1 224 0 2 1341 243 0 0 0 chr6 99161218 99161245 -50355792 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1341 1217 94 71 6 chr6 99161270 99161452 -50355585 - B2_Mm2 SINE B2 0 195 2 2 1341 711 267 123 63 chr6 99162192 99162524 -50354513 - ORR1E LTR MaLR -5 354 3 2 1341 267 31 0 0 chr6 99162974 99163006 -50354031 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1341 362 266 76 14 chr6 99163712 99163857 -50353180 + RMER15 LTR ERVL 422 575 0 2 1341 294 347 40 17 chr6 99164258 99164431 -50352606 + MIR SINE MIR 80 256 -6 2 1341 272 262 0 0 chr6 99164857 99164918 -50352119 - B4A SINE B4 -223 69 9 2 1341 384 275 18 0 chr6 99165014 99165123 -50351914 + B1F SINE Alu 32 142 -7 2 1341 787 167 43 7 chr6 99165472 99165611 -50351426 + B1_Mur2 SINE Alu 1 144 -5 2 1341 280 143 0 28 chr6 99165614 99165686 -50351351 + A-rich Low_complexity Low_complexity 3 72 0 2 1341 482 303 16 46 chr6 99165988 99166182 -50350855 + B3A SINE B2 11 198 0 2 1341 534 227 72 53 chr6 99166209 99166418 -50350619 + B3 SINE B2 1 213 -3 2 1341 1079 230 5 0 chr6 99166755 99166964 -50350073 + B3 SINE B2 1 210 -6 2 1341 623 244 47 6 chr6 99167096 99167265 -50349772 + B4 SINE B4 115 290 -2 2 1341 432 0 0 0 chr6 99167307 99167355 -50349682 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1341 216 0 0 0 chr6 99168002 99168026 -50349011 + (GGCTG)n Simple_repeat Simple_repeat 2 25 0 2 1341 919 272 6 103 chr6 99168027 99168338 -50348699 + B4 SINE B4 12 292 0 2 1341 252 111 0 0 chr6 99168351 99168396 -50348641 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 2 1341 216 239 0 0 chr6 99170755 99170801 -50346236 + MIRc SINE MIR 110 155 -113 2 1341 211 361 14 0 chr6 99170870 99170942 -50346095 - ID SINE ID -150 74 2 2 1341 420 231 148 0 chr6 99170953 99171061 -50345976 - PB1 SINE Alu -3 124 1 2 1341 731 213 39 74 chr6 99172549 99172752 -50344285 - B3A SINE B2 -2 196 1 2 1341 741 23 0 0 chr6 99173039 99173126 -50343911 + (GGGA)n Simple_repeat Simple_repeat 3 89 0 2 1341 303 310 52 44 chr6 99173273 99173408 -50343629 - B4 SINE B4 -54 238 103 2 1341 413 296 105 33 chr6 99174428 99174638 -50342399 + B4A SINE B4 1 225 -67 2 1341 223 194 0 61 chr6 99174761 99174827 -50342210 + (CATA)n Simple_repeat Simple_repeat 3 64 0 2 1341 653 306 97 36 chr6 99176822 99177070 -50339967 + B4 SINE B4 1 263 -29 2 1341 346 329 20 27 chr6 99177654 99177801 -50339236 + ORR1E LTR MaLR 44 189 -170 2 1341 1183 161 0 5 chr6 99177856 99178050 -50338987 + B2_Mm2 SINE B2 2 194 -1 2 1341 451 294 37 21 chr6 99178895 99179083 -50337954 - MIRb SINE MIR -10 258 68 2 1341 370 314 92 34 chr6 99180490 99180740 -50336297 + B4 SINE B4 6 289 -3 2 1341 1169 55 7 0 chr6 99181176 99181321 -50335716 + B1_Mus1 SINE Alu 3 148 0 2 1341 246 0 114 0 chr6 99181326 99181370 -50335667 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1341 398 310 63 16 chr6 99185565 99185755 -50331282 + MER2 DNA MER2_type 57 255 -90 2 1341 1142 143 113 5 chr6 99186153 99186357 -50330680 - URR1A DNA MER1_type 0 226 1 2 1341 441 0 0 0 chr6 99188447 99188496 -50328541 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1341 746 221 0 26 chr6 99188934 99189087 -50327950 - B1_Mur3 SINE Alu 0 149 1 2 1341 26 30 0 0 chr6 99189090 99189123 -50327914 + AT_rich Low_complexity Low_complexity 1 33 0 2 1341 351 0 0 0 chr6 99189132 99189171 -50327866 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1341 1410 56 0 0 chr6 99189202 99189382 -50327655 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1341 364 165 23 12 chr6 99189382 99189457 -50327580 + GA-rich Low_complexity Low_complexity 11 87 0 2 1341 280 276 91 11 chr6 99189489 99189577 -50327460 - RSINE1 SINE B4 -60 105 11 2 1341 459 0 0 0 chr6 99190298 99190349 -50326688 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 2 1341 231 267 0 51 chr6 99191181 99191260 -50325777 + ID_B1 SINE B4 145 219 -5 2 1341 1247 109 106 116 chr6 99191346 99191647 -50325390 + RMER15 LTR ERVL 1 298 -277 2 1341 236 272 57 66 chr6 99191653 99191775 -50325262 + MLT1H LTR MaLR 107 227 -322 2 1341 505 261 17 8 chr6 99193068 99193188 -50323849 - B1_Mur1 SINE Alu -1 148 28 2 1341 269 292 164 30 chr6 99193326 99193460 -50323577 + MER20 DNA MER1_type 10 161 -58 2 1341 494 254 72 38 chr6 99193730 99193992 -50323045 - MER33 DNA MER1_type -19 305 35 2 1341 351 96 0 0 chr6 99194521 99194573 -50322464 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 2 1341 222 239 86 43 chr6 99194586 99194656 -50322381 - PB1 SINE Alu -53 74 2 2 1341 204 135 0 0 chr6 99195120 99195157 -50321880 + (CACG)n Simple_repeat Simple_repeat 3 39 0 2 1341 186 43 0 0 chr6 99196498 99196521 -50320516 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1341 390 74 0 0 chr6 99196613 99196667 -50320370 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1341 249 239 30 0 chr6 99196949 99197016 -50320021 + ID4 SINE ID 2 70 -13 2 1341 1255 69 86 0 chr6 99197312 99197487 -50319550 + B2_Mm2 SINE B2 3 192 -3 3 1341 282 133 0 0 chr6 99197487 99197532 -50319505 + B3A SINE B2 26 70 -128 3 1341 21 0 0 0 chr6 99197564 99197585 -50319452 + AT_rich Low_complexity Low_complexity 1 21 0 3 1341 500 283 63 37 chr6 99197589 99197780 -50319257 + B3A SINE B2 2 197 -1 3 1341 26 30 0 0 chr6 99198150 99198183 -50318854 + AT_rich Low_complexity Low_complexity 1 33 0 3 1341 674 260 0 0 chr6 99198982 99199128 -50317909 - RSINE1 SINE B4 -17 148 3 3 1341 21 0 0 0 chr6 99199623 99199644 -50317393 + GC_rich Low_complexity Low_complexity 1 21 0 3 1341 218 118 0 89 chr6 99200122 99200178 -50316859 + T-rich Low_complexity Low_complexity 3 53 0 3 1341 318 87 0 0 chr6 99200711 99200757 -50316280 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1341 886 278 29 26 chr6 99200764 99201037 -50316000 - B4 SINE B4 -3 289 16 3 1341 483 18 0 0 chr6 99201291 99201347 -50315690 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1341 246 200 0 0 chr6 99202412 99202457 -50314580 + MIRm SINE MIR 220 264 -12 3 1341 480 230 50 81 chr6 99202609 99202770 -50314267 + B4A SINE B4 2 157 -135 3 1341 462 18 0 0 chr6 99202809 99202864 -50314173 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1341 210 368 110 50 chr6 99203817 99204017 -50313020 + B4 SINE B4 7 218 -74 3 1341 501 194 5 0 chr6 99204062 99204168 -50312869 - B3 SINE B2 -84 111 3 3 1341 241 118 37 56 chr6 99204447 99204501 -50312536 + 4.5SRNA scRNA scRNA 21 73 -21 3 1341 227 239 22 0 chr6 99205224 99205270 -50311767 + L2c LINE L2 3267 3313 -74 3 1341 569 274 19 38 chr6 99205917 99206109 -50310928 - ID_B1 SINE B4 -29 263 69 3 1341 698 277 10 5 chr6 99206642 99206834 -50310203 + B4A SINE B4 88 280 -12 3 1341 874 31 39 0 chr6 99206881 99207011 -50310026 + (CA)n Simple_repeat Simple_repeat 1 135 0 3 1341 29 47 0 0 chr6 99207435 99207478 -50309559 + AT_rich Low_complexity Low_complexity 1 43 0 3 1341 231 235 39 0 chr6 99208532 99208583 -50308454 - ID4_ SINE ID -19 64 12 3 1341 466 220 0 10 chr6 99208586 99208687 -50308350 - PB1D9 SINE Alu -16 104 5 3 1341 331 377 0 0 chr6 99210160 99210266 -50306771 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 1341 225 265 0 0 chr6 99212911 99212994 -50304043 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1341 198 0 0 0 chr6 99213338 99213360 -50303677 + (CCCCCT)n Simple_repeat Simple_repeat 3 24 0 3 1341 387 0 0 0 chr6 99213489 99213532 -50303505 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1341 428 0 19 0 chr6 99213532 99213583 -50303454 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1341 28 29 0 0 chr6 99215552 99215587 -50301450 + AT_rich Low_complexity Low_complexity 1 35 0 3 1341 186 118 0 0 chr6 99217489 99217523 -50299514 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1341 22 35 0 0 chr6 99217590 99217619 -50299418 + AT_rich Low_complexity Low_complexity 1 29 0 3 1341 399 209 118 76 chr6 99217641 99217760 -50299277 - RSINE1 SINE B4 -38 127 4 3 1341 22 0 0 0 chr6 99218081 99218103 -50298934 + AT_rich Low_complexity Low_complexity 1 22 0 3 1342 317 133 0 32 chr6 99223528 99223577 -50293460 + (ATG)n Simple_repeat Simple_repeat 1 48 0 3 1342 1023 156 0 0 chr6 99223577 99223756 -50293281 + (TGG)n Simple_repeat Simple_repeat 1 179 0 3 1342 317 133 0 32 chr6 99223756 99223768 -50293269 + (ATG)n Simple_repeat Simple_repeat 1 12 0 3 1342 213 121 0 0 chr6 99223900 99223933 -50293104 + (TAGA)n Simple_repeat Simple_repeat 3 35 0 3 1342 22 35 0 0 chr6 99225986 99226015 -50291022 + AT_rich Low_complexity Low_complexity 1 29 0 3 1342 338 205 0 0 chr6 99226876 99226954 -50290083 + B1_Mus2 SINE Alu 1 78 -69 3 1342 186 43 0 0 chr6 99226970 99226993 -50290044 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1342 423 306 122 20 chr6 99227309 99227506 -50289531 - B4A SINE B4 -3 289 73 3 1342 527 244 263 18 chr6 99228699 99228870 -50288167 - B3 SINE B2 -1 215 3 3 1342 262 317 49 16 chr6 99230777 99230899 -50286138 + MER5B DNA MER1_type 50 175 -3 3 1342 279 256 39 0 chr6 99231185 99231263 -50285774 + RSINE1 SINE B4 75 155 -10 3 1342 1022 242 100 10 chr6 99232089 99232424 -50284613 - ORR1D2 LTR MaLR -2 417 1 3 1342 503 332 44 35 chr6 99232558 99232761 -50284276 + B4 SINE B4 82 286 -6 3 1342 516 105 0 0 chr6 99233715 99233791 -50283246 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1342 295 365 6 13 chr6 99234185 99234343 -50282694 - Tigger5 DNA MER2_type -2228 178 22 3 1342 502 267 132 28 chr6 99235600 99235812 -50281225 + B4A SINE B4 1 234 -58 3 1342 241 358 0 9 chr6 99236387 99236494 -50280543 + PB1D10 SINE Alu 4 109 -8 3 1342 200 222 0 0 chr6 99236575 99236620 -50280417 + A-rich Low_complexity Low_complexity 1 45 0 3 1342 1025 222 124 78 chr6 99236627 99236999 -50280038 - MTD LTR MaLR 0 419 31 3 1342 1302 44 11 11 chr6 99237287 99237471 -50279566 - B2_Mm1t SINE B2 0 193 10 3 1342 600 303 5 58 chr6 99238405 99238629 -50278408 + B4 SINE B4 40 251 -41 3 1342 1109 207 9 18 chr6 99238667 99238884 -50278153 - B3 SINE B2 -1 215 1 3 1342 344 275 132 0 chr6 99240360 99240451 -50276586 + ID_B1 SINE B4 100 202 -22 3 1342 226 242 92 128 chr6 99240451 99240466 -50276571 + PB1D7 SINE Alu 19 120 0 3 1342 261 261 67 8 chr6 99241352 99241472 -50275565 + L1M4 LINE L1 2484 2610 -3536 3 1342 330 318 85 31 chr6 99241596 99241820 -50275217 + L1M4 LINE L1 2780 3015 -3131 3 1342 194 91 30 0 chr6 99242946 99242979 -50274058 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 3 1342 221 253 60 0 chr6 99243575 99243658 -50273379 + PB1D10 SINE Alu 30 117 0 3 1342 1471 63 5 30 chr6 99243905 99244102 -50272935 - B2_Mm1t SINE B2 0 193 2 3 1342 317 321 41 92 chr6 99244479 99244844 -50272193 + ORR1E LTR MaLR 5 355 -4 3 1342 250 115 0 19 chr6 99244936 99244989 -50272048 - B2_Mm2 SINE B2 -7 188 137 3 1342 1056 103 79 0 chr6 99245074 99245239 -50271798 - B2_Mm1t SINE B2 -14 179 2 3 1342 425 231 0 71 chr6 99246721 99246819 -50270218 + B4A SINE B4 138 228 -64 3 1342 452 279 81 62 chr6 99246826 99247119 -50269918 + B4A SINE B4 7 281 -11 3 1342 229 273 0 25 chr6 99247156 99247235 -50269802 + B4A SINE B4 216 292 0 3 1342 271 314 0 29 chr6 99247281 99247386 -50269651 + PB1D10 SINE Alu 5 106 -11 3 1342 694 281 42 71 chr6 99248030 99248109 -50268928 + B4 SINE B4 4 84 -208 3 1342 348 24 0 0 chr6 99248109 99248150 -50268887 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1342 694 281 42 71 chr6 99248150 99248353 -50268684 + B4 SINE B4 85 278 -14 3 1342 199 170 143 54 chr6 99248503 99248559 -50268478 + L2 LINE L2 1230 1290 -2129 3 1342 252 86 0 0 chr6 99248836 99248871 -50268166 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1342 533 266 36 55 chr6 99248952 99249171 -50267866 - B4A SINE B4 -75 217 3 3 1342 467 275 4 8 chr6 99250222 99250353 -50266684 + PB1D10 SINE Alu 6 133 -14 3 1342 899 195 34 24 chr6 99250670 99250875 -50266162 + B3 SINE B2 9 215 -1 3 1342 259 273 0 15 chr6 99251193 99251260 -50265777 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 3 1342 271 264 0 32 chr6 99252343 99252437 -50264600 + GA-rich Low_complexity Low_complexity 4 94 0 3 1342 818 246 77 15 chr6 99253274 99253545 -50263492 - B4A SINE B4 -9 283 2 3 1342 261 316 159 53 chr6 99254290 99254517 -50262520 - B4A SINE B4 -18 274 24 3 1342 306 0 0 0 chr6 99254531 99254565 -50262472 + (TTTTC)n Simple_repeat Simple_repeat 1 34 0 3 1342 559 98 22 0 chr6 99254568 99254660 -50262377 + (TC)n Simple_repeat Simple_repeat 1 94 0 3 1342 1307 103 38 0 chr6 99254661 99254846 -50262191 - B2_Mm2 SINE B2 -3 192 1 3 1342 314 270 11 0 chr6 99254974 99255063 -50261974 + PB1D10 SINE Alu 5 94 -23 3 1342 225 0 0 0 chr6 99255063 99255088 -50261949 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1342 1234 108 21 16 chr6 99256555 99256744 -50260293 + B2_Mm1t SINE B2 1 190 -3 3 1342 980 224 104 22 chr6 99257916 99258185 -50258852 - B4 SINE B4 0 292 2 3 1342 668 284 59 15 chr6 99258673 99258945 -50258092 - B4A SINE B4 -6 286 3 3 1342 185 0 0 39 chr6 99259915 99259941 -50257096 + (CAGC)n Simple_repeat Simple_repeat 1 25 0 3 1342 315 0 0 0 chr6 99260089 99260124 -50256913 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1342 201 108 0 0 chr6 99261299 99261336 -50255701 + (C)n Simple_repeat Simple_repeat 1 37 0 3 1342 235 0 0 54 chr6 99261454 99261491 -50255546 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1342 21 71 0 0 chr6 99262027 99262069 -50254968 + AT_rich Low_complexity Low_complexity 1 42 0 3 1342 312 102 0 0 chr6 99263097 99263146 -50253891 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 3 1342 336 282 45 8 chr6 99263163 99263295 -50253742 + CT-rich Low_complexity Low_complexity 1 137 0 3 1342 510 220 0 92 chr6 99264197 99264292 -50252745 + PB1D9 SINE Alu 1 95 -25 3 1342 909 50 43 7 chr6 99264292 99264432 -50252605 + L1_Mus3 LINE L1 6494 6638 0 3 1342 510 220 0 92 chr6 99264432 99264466 -50252571 + PB1D9 SINE Alu 96 118 -2 3 1342 356 344 70 2 chr6 99264610 99264778 -50252259 - MER58A DNA MER1_type -2127 293 1 3 1342 207 114 29 0 chr6 99265175 99265210 -50251827 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1342 236 203 17 17 chr6 99266623 99266683 -50250354 + GA-rich Low_complexity Low_complexity 3 62 0 3 1342 429 95 0 0 chr6 99266949 99267012 -50250025 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1342 722 202 208 28 chr6 99267120 99267298 -50249739 - B3 SINE B2 -6 210 1 4 1342 401 224 24 0 chr6 99267858 99267943 -50249094 - B1_Mus2 SINE Alu -25 122 36 4 1342 1675 31 0 0 chr6 99268309 99268501 -50248536 + B2_Mm1a SINE B2 1 192 -1 4 1342 742 248 152 44 chr6 99268583 99268925 -50248112 + Lx8 LINE L1 7093 7471 -2 4 1342 21 0 0 0 chr6 99268928 99268949 -50248088 + AT_rich Low_complexity Low_complexity 1 21 0 4 1342 220 274 164 19 chr6 99269454 99269558 -50247479 - MER5A DNA MER1_type -57 132 14 4 1342 22 0 0 0 chr6 99271538 99271560 -50245477 + AT_rich Low_complexity Low_complexity 1 22 0 4 1342 303 93 0 0 chr6 99272118 99272161 -50244876 + (GGGGA)n Simple_repeat Simple_repeat 4 46 0 4 1342 970 248 118 24 chr6 99273192 99273522 -50243515 + ORR1D2 LTR MaLR 10 370 0 4 1342 415 203 0 0 chr6 99274029 99274103 -50242934 - ID4_ SINE ID -9 74 1 4 1342 248 336 67 25 chr6 99274611 99274730 -50242307 + B3A SINE B2 40 163 -35 4 1342 378 0 0 0 chr6 99274732 99274774 -50242263 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1342 351 0 0 0 chr6 99274774 99274812 -50242225 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1342 725 169 59 0 chr6 99274858 99274994 -50242043 + B1_Mur4 SINE Alu 6 149 -1 4 1342 234 0 0 0 chr6 99274994 99275020 -50242017 + (TAGA)n Simple_repeat Simple_repeat 2 27 0 4 1342 220 326 41 0 chr6 99275495 99275593 -50241444 - MIR SINE MIR -95 167 66 4 1342 229 278 0 0 chr6 99276237 99276291 -50240746 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1342 496 294 36 42 chr6 99276970 99277137 -50239900 + B4A SINE B4 123 288 -4 4 1342 252 0 0 0 chr6 99277150 99277178 -50239859 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1342 585 305 28 5 chr6 99277223 99277434 -50239603 + MER58B DNA MER1_type 114 329 -12 4 1342 517 296 61 43 chr6 99279826 99280056 -50236981 - MER2 DNA MER2_type -3 342 109 4 1342 508 286 124 10 chr6 99280200 99280394 -50236643 + B3 SINE B2 1 216 0 4 1342 280 301 36 0 chr6 99280508 99280591 -50236446 + B4 SINE B4 42 127 -165 4 1342 201 147 0 0 chr6 99280699 99280733 -50236304 + (CACG)n Simple_repeat Simple_repeat 2 35 0 4 1342 243 0 0 0 chr6 99280832 99280859 -50236178 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1342 269 352 108 16 chr6 99281469 99281654 -50235383 + Lx8 LINE L1 7073 7274 -199 4 1342 231 301 148 42 chr6 99282058 99282200 -50234837 + LTR85a LTR Gypsy? 535 691 -11 4 1342 1065 21 0 27 chr6 99282341 99282487 -50234550 + B1_Mus2 SINE Alu 6 147 0 4 1342 273 29 0 0 chr6 99282504 99282538 -50234499 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1342 261 330 0 0 chr6 99283429 99283526 -50233511 + (CATATA)n Simple_repeat Simple_repeat 4 100 0 4 1342 213 132 0 0 chr6 99288082 99288120 -50228917 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 4 1342 288 0 0 0 chr6 99289096 99289128 -50227909 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1342 342 45 0 0 chr6 99289807 99289851 -50227186 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1342 23 0 0 0 chr6 99290478 99290501 -50226536 + AT_rich Low_complexity Low_complexity 1 23 0 4 1342 458 273 119 49 chr6 99291779 99291964 -50225073 + B3A SINE B2 1 198 0 4 1342 647 188 136 3 chr6 99292519 99292767 -50224270 + ORR1C1 LTR MaLR 1 325 -59 4 1342 844 45 0 106 chr6 99292782 99292981 -50224056 + CT-rich Low_complexity Low_complexity 2 179 0 4 1342 1181 11 0 72 chr6 99292989 99293183 -50223854 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 4 1342 354 154 31 0 chr6 99293199 99293264 -50223773 + ORR1C1 LTR MaLR 316 382 -2 4 1342 229 284 93 19 chr6 99293627 99293803 -50223234 + L2c LINE L2 2952 3152 -235 4 1342 191 225 214 51 chr6 99294517 99294634 -50222403 - MIR SINE MIR -111 157 22 4 1342 314 358 42 0 chr6 99294812 99294977 -50222060 - MER45A DNA Tip100 -2 176 5 4 1342 879 239 72 137 chr6 99295304 99295706 -50221331 + ORR1C2 LTR MaLR 9 384 0 4 1342 344 333 25 86 chr6 99295712 99295909 -50221128 - B4A SINE B4 -105 187 3 4 1342 270 348 0 0 chr6 99296027 99296096 -50220941 - ID4_ SINE ID -14 69 1 4 1342 502 150 16 24 chr6 99297243 99297366 -50219671 + GA-rich Low_complexity Low_complexity 3 124 0 4 1342 408 204 32 11 chr6 99298681 99298775 -50218262 + B4A SINE B4 185 280 -12 4 1342 316 327 0 0 chr6 99298791 99298895 -50218142 + (CA)n Simple_repeat Simple_repeat 1 104 0 4 1342 305 312 0 0 chr6 99299446 99299523 -50217514 + B4 SINE B4 2 78 -214 4 1342 228 163 0 0 chr6 99299524 99299567 -50217470 + (TTG)n Simple_repeat Simple_repeat 1 43 0 4 1342 273 81 32 16 chr6 99299582 99299645 -50217392 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 1342 550 300 47 0 chr6 99299654 99299804 -50217233 + RSINE1 SINE B4 3 159 -6 4 1342 531 269 36 95 chr6 99299822 99300044 -50216993 + B4 SINE B4 83 291 -1 4 1342 348 364 0 0 chr6 99303621 99303731 -50213306 + MER5B DNA MER1_type 53 162 -16 4 1342 183 268 52 35 chr6 99304341 99304399 -50212638 + L2a LINE L2 3354 3412 -14 4 1342 437 0 19 0 chr6 99305097 99305150 -50211887 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1342 363 247 35 0 chr6 99306232 99306317 -50210720 + B4A SINE B4 1 88 -204 4 1342 351 0 0 0 chr6 99306400 99306439 -50210598 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1342 425 340 108 37 chr6 99306567 99306863 -50210174 - MER2 DNA MER2_type -16 329 13 4 1342 719 83 9 0 chr6 99306885 99306993 -50210044 + (TA)n Simple_repeat Simple_repeat 2 110 0 4 1342 183 129 0 0 chr6 99307416 99307447 -50209590 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 4 1342 189 0 0 0 chr6 99307773 99307794 -50209243 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1342 633 252 198 21 chr6 99307832 99308075 -50208962 - B4 SINE B4 -4 288 3 4 1342 201 256 47 86 chr6 99308178 99308306 -50208731 + MIRc SINE MIR 25 147 -121 4 1342 789 269 95 116 chr6 99308439 99308653 -50208384 + MTEa LTR MaLR 3 211 -168 4 1342 801 103 0 0 chr6 99308653 99308779 -50208258 + (CA)n Simple_repeat Simple_repeat 2 127 0 4 1342 695 188 16 8 chr6 99308782 99308911 -50208126 - B1_Mus1 SINE Alu -17 131 2 4 1342 789 269 95 116 chr6 99308911 99309070 -50207967 + MTEa LTR MaLR 212 372 -7 4 1342 351 0 0 0 chr6 99310134 99310173 -50206864 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1342 346 136 0 0 chr6 99312874 99312933 -50204104 + B1_Mus1 SINE Alu 1 59 -89 4 1342 281 356 0 0 chr6 99312933 99313048 -50203989 + (CAGG)n Simple_repeat Simple_repeat 4 118 0 4 1342 730 85 0 9 chr6 99313048 99313155 -50203882 + B1_Mus2 SINE Alu 40 145 -2 4 1342 2253 166 58 5 chr6 99313171 99313571 -50203466 + MTC LTR MaLR 1 421 0 4 1342 184 239 55 27 chr6 99313629 99313702 -50203335 - L2b LINE L2 -272 3103 3029 4 1342 249 33 0 0 chr6 99314279 99314309 -50202728 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1342 498 61 0 0 chr6 99315006 99315072 -50201965 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1342 311 303 18 79 chr6 99315672 99315837 -50201200 - B4A SINE B4 -136 156 2 4 1342 1071 110 0 12 chr6 99316375 99316541 -50200496 + B2_Mm2 SINE B2 1 164 -31 4 1342 664 282 25 30 chr6 99316962 99317163 -50199874 - B4 SINE B4 -62 230 31 4 1342 202 158 0 50 chr6 99317452 99317473 -50199564 + (CCA)n Simple_repeat Simple_repeat 1 20 0 4 1342 282 29 0 0 chr6 99317473 99317508 -50199529 + (CAA)n Simple_repeat Simple_repeat 1 35 0 4 1342 202 158 0 50 chr6 99317508 99317526 -50199511 + (CCA)n Simple_repeat Simple_repeat 1 18 0 4 1342 576 0 0 0 chr6 99317575 99317639 -50199398 + (GGGA)n Simple_repeat Simple_repeat 3 66 0 4 1342 570 252 222 34 chr6 99318734 99318968 -50198069 - B4 SINE B4 -14 278 1 4 1342 255 322 71 19 chr6 99319025 99319180 -50197857 - MER5A1 DNA MER1_type -3 163 1 4 1342 180 0 0 0 chr6 99319582 99319602 -50197435 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1342 561 224 10 83 chr6 99321156 99321216 -50195821 + ID_B1 SINE B4 42 225 -63 4 1342 1034 30 0 15 chr6 99321216 99321353 -50195684 + B1_Mus1 SINE Alu 14 148 0 4 1342 274 88 49 24 chr6 99321357 99321439 -50195598 + A-rich Low_complexity Low_complexity 5 88 0 4 1342 313 321 37 0 chr6 99323181 99323290 -50193747 + L2b LINE L2 2998 3110 -265 4 1342 299 200 18 0 chr6 99323319 99323374 -50193663 + Lx8 LINE L1 7144 7199 -274 4 1342 270 0 0 0 chr6 99323465 99323495 -50193542 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 4 1342 803 155 236 0 chr6 99323882 99324056 -50192981 + B3 SINE B2 2 216 0 4 1342 386 264 18 66 chr6 99325730 99325896 -50191141 - B4A SINE B4 -134 158 1 4 1342 333 82 0 0 chr6 99328432 99328481 -50188556 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 4 1342 333 272 500 46 chr6 99328520 99328716 -50188321 + B4 SINE B4 7 291 -1 4 1342 886 243 10 10 chr6 99330624 99330832 -50186205 + B3 SINE B2 3 210 -6 4 1342 207 0 0 0 chr6 99330934 99330957 -50186080 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1342 377 293 22 29 chr6 99331068 99331205 -50185832 + B1F SINE Alu 2 137 -12 4 1342 369 0 0 0 chr6 99331208 99331249 -50185788 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1342 323 244 11 34 chr6 99331322 99331411 -50185626 + B4A SINE B4 1 87 -205 4 1342 333 0 0 0 chr6 99331548 99331585 -50185452 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1342 306 0 0 0 chr6 99332653 99332687 -50184350 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1342 264 274 150 0 chr6 99332733 99332846 -50184191 + B4 SINE B4 6 135 -157 5 1342 321 118 0 0 chr6 99332954 99333005 -50184032 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1342 514 292 163 19 chr6 99334301 99334626 -50182411 + L1MB2 LINE L1 5796 6167 -4 5 1342 233 295 0 0 chr6 99334690 99334751 -50182286 + ID4 SINE ID 23 83 0 5 1342 454 246 48 48 chr6 99335103 99335248 -50181789 + MER20 DNA MER1_type 70 214 -5 5 1342 796 143 68 0 chr6 99335351 99335484 -50181553 + B1_Mur2 SINE Alu 1 142 -7 5 1342 396 198 39 133 chr6 99335910 99336038 -50180999 - B1_Mur3 SINE Alu -12 137 22 5 1342 732 277 58 38 chr6 99336311 99336551 -50180486 - B4A SINE B4 -13 279 35 5 1342 227 250 0 20 chr6 99336640 99336689 -50180348 + polypyrimidine Low_complexity Low_complexity 1 48 0 5 1342 652 324 26 53 chr6 99336689 99336917 -50180120 - ID_B1 SINE B4 -2 222 1 5 1342 1060 212 14 14 chr6 99336950 99337160 -50179877 + B3 SINE B2 1 210 -6 5 1342 2361 171 17 7 chr6 99337268 99337685 -50179352 - MTC LTR MaLR 0 421 1 5 1342 25 0 0 0 chr6 99340688 99340713 -50176324 + AT_rich Low_complexity Low_complexity 1 25 0 5 1342 240 316 0 12 chr6 99341388 99341468 -50175569 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 1342 867 315 41 26 chr6 99341558 99341825 -50175212 - B4 SINE B4 0 292 22 5 1342 396 0 0 0 chr6 99345096 99345140 -50171897 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1342 297 51 0 0 chr6 99345340 99345379 -50171658 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1342 321 26 0 0 chr6 99346964 99347002 -50170035 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1342 230 261 60 128 chr6 99347445 99347594 -50169443 - YREP_Mm Unknown Unknown -1460 352 214 5 1342 763 168 0 31 chr6 99347497 99347626 -50169411 + B1_Mur4 SINE Alu 6 130 -20 5 1342 691 284 215 17 chr6 99347645 99347887 -50169150 + B4 SINE B4 3 292 0 5 1342 214 250 0 0 chr6 99347890 99347934 -50169103 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1342 2233 111 48 9 chr6 99348297 99348632 -50168405 + Lx4A LINE L1 6710 7057 -1 5 1342 189 262 0 110 chr6 99349756 99349829 -50167208 - L2 LINE L2 -525 2894 2830 5 1342 23 33 0 0 chr6 99350424 99350454 -50166583 + AT_rich Low_complexity Low_complexity 1 30 0 5 1342 282 56 0 0 chr6 99350455 99350491 -50166546 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1342 244 314 100 0 chr6 99350500 99350570 -50166467 - B3 SINE B2 -139 77 1 5 1342 271 295 116 39 chr6 99350704 99350859 -50166178 - Lx8 LINE L1 -138 7335 7169 5 1342 495 0 0 0 chr6 99351765 99351820 -50165217 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1342 323 288 81 44 chr6 99351897 99352057 -50164980 - B4A SINE B4 -125 167 2 5 1342 270 337 56 0 chr6 99352197 99352286 -50164751 + PB1D10 SINE Alu 4 97 -20 5 1342 225 0 0 0 chr6 99352286 99352311 -50164726 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 5 1343 208 319 0 40 chr6 99352681 99352756 -50164281 + GA-rich Low_complexity Low_complexity 4 75 0 5 1343 306 0 0 0 chr6 99353637 99353671 -50163366 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1343 303 188 224 0 chr6 99354056 99354141 -50162896 + L1M4b LINE L1 2220 2323 -5011 5 1343 357 62 0 0 chr6 99355393 99355441 -50161596 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1343 292 237 51 0 chr6 99358576 99358635 -50158402 + MIR SINE MIR 112 173 -89 5 1343 723 128 48 41 chr6 99360919 99361066 -50155971 - B1F SINE Alu -1 148 1 5 1343 439 277 0 9 chr6 99361345 99361458 -50155579 - PB1D10 SINE Alu -2 115 4 5 1343 281 289 28 92 chr6 99363130 99363271 -50153766 + MIR SINE MIR 70 201 -61 5 1343 1113 209 170 22 chr6 99363697 99364020 -50153017 + ORR1D1 LTR MaLR 4 374 0 5 1343 811 282 115 28 chr6 99364907 99365159 -50151878 - B4 SINE B4 -4 288 15 5 1343 459 254 7 40 chr6 99365831 99365854 -50151183 + ID_B1 SINE B4 70 212 -12 5 1343 695 184 32 0 chr6 99365854 99365979 -50151058 + B1_Mur3 SINE Alu 9 137 -12 5 1343 812 85 0 8 chr6 99365979 99366098 -50150939 + (GAAAA)n Simple_repeat Simple_repeat 3 120 0 5 1343 183 283 22 0 chr6 99366452 99366498 -50150539 - MIRm SINE MIR -98 178 132 5 1343 215 316 38 38 chr6 99366579 99366658 -50150379 + ID4 SINE ID 2 80 -3 5 1343 3070 76 5 10 chr6 99366912 99367310 -50149727 + MTB LTR MaLR 2 397 -3 5 1343 1485 53 0 55 chr6 99367311 99367471 -50149566 + B2_Mm1a SINE B2 1 160 -33 5 1343 324 0 0 0 chr6 99367471 99367507 -50149530 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 5 1343 1485 53 0 55 chr6 99367507 99367547 -50149490 + B2_Mm1a SINE B2 161 190 -3 5 1343 486 0 0 0 chr6 99367580 99367634 -50149403 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 5 1343 243 321 82 7 chr6 99367897 99368032 -50149005 - MER33 DNA MER1_type -10 314 170 5 1343 580 252 172 8 chr6 99368328 99368551 -50148486 - B4 SINE B4 -20 272 13 5 1343 959 221 52 0 chr6 99368991 99369204 -50147833 - URR1B DNA MER1_type -1 224 1 5 1343 321 89 0 0 chr6 99371334 99371379 -50145658 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 5 1343 568 326 20 35 chr6 99372025 99372199 -50144838 + B3A SINE B2 2 176 -22 5 1343 500 65 0 13 chr6 99372199 99372277 -50144760 + (CA)n Simple_repeat Simple_repeat 1 77 0 5 1343 568 326 20 35 chr6 99372277 99372302 -50144735 + B3A SINE B2 177 198 0 5 1343 516 288 42 68 chr6 99373558 99373593 -50143444 - B2_Mm2 SINE B2 -10 185 152 5 1343 219 36 0 0 chr6 99373593 99373621 -50143416 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1343 664 281 111 0 chr6 99373621 99373775 -50143262 - B3 SINE B2 -46 170 1 5 1343 1202 35 14 0 chr6 99373908 99374053 -50142984 + B1_Mm SINE Alu 1 147 0 5 1343 206 121 0 0 chr6 99374053 99374086 -50142951 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1343 534 320 96 24 chr6 99374494 99374702 -50142335 + B4 SINE B4 70 292 0 5 1343 632 261 18 24 chr6 99374737 99374902 -50142135 + RSINE1 SINE B4 2 165 0 5 1343 561 350 87 23 chr6 99375018 99375328 -50141709 + MER58B DNA MER1_type 3 332 -9 5 1343 496 264 134 81 chr6 99375397 99375644 -50141393 - B4 SINE B4 -17 275 16 5 1343 237 283 119 48 chr6 99376272 99376398 -50140639 - MIRc SINE MIR -111 165 21 5 1343 405 297 144 29 chr6 99377691 99377899 -50139138 - B4A SINE B4 -60 232 1 5 1343 298 339 27 0 chr6 99378140 99378252 -50138785 + MIR SINE MIR 148 262 0 5 1343 207 0 0 0 chr6 99379061 99379084 -50137953 + (CCCCCT)n Simple_repeat Simple_repeat 2 24 0 5 1343 217 269 0 0 chr6 99379384 99379436 -50137601 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1343 392 295 50 65 chr6 99379469 99379722 -50137315 - B4 SINE B4 -18 274 45 5 1343 721 130 43 0 chr6 99381456 99381571 -50135466 + PB1D9 SINE Alu 1 120 0 5 1343 366 155 10 20 chr6 99381575 99381674 -50135363 + GA-rich Low_complexity Low_complexity 4 101 0 5 1343 1121 118 0 6 chr6 99381674 99381853 -50135184 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 1343 468 0 0 0 chr6 99381853 99381905 -50135132 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 5 1343 667 260 164 11 chr6 99382089 99382318 -50134719 + B4 SINE B4 30 292 0 5 1343 198 0 0 0 chr6 99383287 99383309 -50133728 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1343 180 0 0 0 chr6 99385132 99385152 -50131885 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 5 1343 819 119 21 56 chr6 99385567 99385709 -50131328 - B1_Mus1 SINE Alu 0 148 12 5 1343 253 231 64 141 chr6 99385569 99385713 -50131324 - B4A SINE B4 -68 224 92 5 1343 189 0 0 0 chr6 99385713 99385734 -50131303 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1343 253 231 64 141 chr6 99385734 99385745 -50131292 - B4A SINE B4 -201 91 81 5 1343 252 0 0 0 chr6 99385749 99385777 -50131260 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1343 1133 43 0 28 chr6 99385777 99385921 -50131116 - B1_Mus1 SINE Alu -7 141 2 5 1343 22 35 0 0 chr6 99386083 99386112 -50130925 + AT_rich Low_complexity Low_complexity 1 29 0 5 1343 215 281 138 22 chr6 99386946 99387084 -50129953 + L2 LINE L2 2853 3006 -413 5 1343 988 222 25 5 chr6 99387541 99387740 -50129297 + B3 SINE B2 2 204 -12 5 1343 534 104 0 30 chr6 99388060 99388159 -50128878 + (GGA)n Simple_repeat Simple_repeat 2 97 0 5 1343 367 235 92 0 chr6 99388737 99388856 -50128181 + L1MEc LINE L1 1618 1747 -4653 5 1343 253 309 171 29 chr6 99390327 99390467 -50126570 - MER5A DNA MER1_type -2 187 28 5 1343 307 305 117 76 chr6 99392792 99392812 -50124225 + ORR1E LTR MaLR 47 66 -293 5 1343 756 33 0 0 chr6 99392812 99392903 -50124134 + (TA)n Simple_repeat Simple_repeat 1 91 0 5 1343 307 305 117 76 chr6 99392903 99393173 -50123864 + ORR1E LTR MaLR 67 349 -10 5 1343 1016 127 0 0 chr6 99394737 99394887 -50122150 - B1_Mur4 SINE Alu 0 150 1 5 1343 180 0 0 0 chr6 99395094 99395114 -50121923 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1343 448 248 112 71 chr6 99395119 99395288 -50121749 + B4 SINE B4 4 179 -113 5 1343 233 217 0 42 chr6 99395245 99395293 -50121744 + RLTR25A LTR ERVK 522 567 -536 5 1343 346 145 197 0 chr6 99395351 99395427 -50121610 + B3 SINE B2 123 213 -3 5 1343 768 264 4 103 chr6 99395468 99395630 -50121407 + B4A SINE B4 84 241 -51 5 1343 1325 75 37 16 chr6 99395630 99395820 -50121217 + B2_Mm2 SINE B2 2 195 0 5 1343 768 264 4 103 chr6 99395820 99395865 -50121172 + B4A SINE B4 242 277 -15 5 1343 324 0 0 0 chr6 99395865 99395901 -50121136 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1343 768 264 4 103 chr6 99395901 99395924 -50121113 + B4A SINE B4 278 292 0 5 1343 696 191 6 11 chr6 99396026 99396201 -50120836 + GA-rich Low_complexity Low_complexity 2 175 0 5 1343 1189 58 0 0 chr6 99396338 99396477 -50120560 + B1_Mm SINE Alu 1 139 -8 6 1343 214 244 124 44 chr6 99397448 99397521 -50119516 - MIR SINE MIR -56 152 77 6 1343 674 290 5 10 chr6 99398155 99398364 -50118673 + B3 SINE B2 5 212 -4 6 1343 201 274 152 40 chr6 99399088 99399187 -50117850 - MIRb SINE MIR -156 112 3 6 1343 615 62 0 0 chr6 99399266 99399346 -50117691 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1343 872 247 100 0 chr6 99399495 99399685 -50117352 + B4 SINE B4 1 209 -83 6 1343 222 37 0 0 chr6 99399718 99399745 -50117292 + (CCCCCT)n Simple_repeat Simple_repeat 6 32 0 6 1343 383 365 13 19 chr6 99400291 99400450 -50116587 - MLT1B LTR MaLR -47 343 186 6 1343 308 291 6 25 chr6 99400760 99400880 -50116157 - B4 SINE B4 -100 192 74 6 1343 213 341 24 24 chr6 99402094 99402178 -50114859 + RSINE1 SINE B4 82 165 0 6 1343 384 311 77 18 chr6 99402638 99402842 -50114195 - MIRb SINE MIR -10 258 43 6 1343 755 321 21 39 chr6 99403265 99403544 -50113493 + B4 SINE B4 1 274 -18 6 1343 267 291 166 14 chr6 99403893 99404182 -50112855 + L2a LINE L2 2376 2708 -711 6 1343 684 206 20 27 chr6 99404263 99404413 -50112624 + B1_Mur4 SINE Alu 2 150 0 6 1343 1380 94 0 16 chr6 99404413 99404607 -50112430 + B2_Mm2 SINE B2 1 191 -4 6 1343 180 179 0 0 chr6 99404698 99404737 -50112300 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1343 201 238 0 0 chr6 99404754 99404796 -50112241 + C-rich Low_complexity Low_complexity 5 46 0 6 1343 329 326 134 54 chr6 99404955 99405344 -50111693 + L2a LINE L2 3005 3424 -2 6 1343 380 333 10 0 chr6 99405441 99405540 -50111497 - ID_B1 SINE B4 -123 101 2 6 1343 587 317 77 10 chr6 99405790 99405997 -50111040 + ID_B1 SINE B4 1 221 -3 6 1343 356 304 138 90 chr6 99405994 99406160 -50110877 + MLT1A1 LTR MaLR 92 245 -163 6 1343 554 276 65 25 chr6 99406160 99406361 -50110676 + B3 SINE B2 1 209 -7 6 1343 356 304 138 90 chr6 99406361 99406483 -50110554 + MLT1A1 LTR MaLR 246 393 -15 6 1343 293 391 0 36 chr6 99407552 99407690 -50109347 + RSINE1 SINE B4 4 136 -29 6 1343 590 216 124 0 chr6 99408964 99409127 -50107910 + B3 SINE B2 6 198 0 6 1343 361 310 101 19 chr6 99409197 99409355 -50107682 + MIR SINE MIR 33 203 -59 6 1343 491 294 152 8 chr6 99409355 99409605 -50107432 + B4A SINE B4 5 290 -2 6 1343 488 160 10 0 chr6 99409614 99409714 -50107323 + (CA)n Simple_repeat Simple_repeat 2 102 0 6 1343 207 100 0 0 chr6 99410049 99410079 -50106958 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1343 342 306 15 46 chr6 99410079 99410203 -50106834 - RSINE1 SINE B4 -42 123 4 6 1343 927 135 7 0 chr6 99410412 99410553 -50106484 + B1_Mus1 SINE Alu 7 148 0 6 1343 243 61 0 0 chr6 99410565 99410598 -50106439 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 6 1343 446 239 202 0 chr6 99410634 99410743 -50106294 + B1_Mur1 SINE Alu 1 131 -18 6 1343 571 186 115 0 chr6 99411176 99411289 -50105748 + B1_Mus1 SINE Alu 1 126 -22 6 1343 522 83 0 0 chr6 99411289 99411361 -50105676 + (GGA)n Simple_repeat Simple_repeat 1 72 0 6 1343 207 0 0 0 chr6 99412548 99412571 -50104466 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1343 852 226 60 81 chr6 99413125 99413409 -50103628 + B4 SINE B4 2 279 -13 6 1343 189 147 0 0 chr6 99413660 99413694 -50103343 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1343 189 256 0 0 chr6 99413794 99413833 -50103204 - L2b LINE L2 -308 3067 3029 6 1343 566 314 64 32 chr6 99414840 99415123 -50101914 + MLT1C LTR MaLR 62 353 -114 6 1343 524 297 80 45 chr6 99415339 99415530 -50101507 - Tigger5 DNA MER2_type -2191 215 18 6 1343 882 250 75 24 chr6 99415530 99415743 -50101294 + B4A SINE B4 2 225 -67 6 1343 200 227 0 0 chr6 99416011 99416055 -50100982 + A-rich Low_complexity Low_complexity 1 44 0 6 1343 324 0 0 0 chr6 99416055 99416091 -50100946 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1343 3392 113 2 2 chr6 99418184 99418691 -50098346 + L1_Mus4 LINE L1 6130 6636 0 6 1343 207 0 0 0 chr6 99419456 99419479 -50097558 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1343 888 275 77 44 chr6 99421478 99421752 -50095285 + B4 SINE B4 3 285 -7 6 1343 411 21 0 0 chr6 99421808 99421856 -50095181 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1343 694 304 89 8 chr6 99422223 99422482 -50094555 + MER21B LTR ERV1 137 416 -447 6 1343 384 119 0 0 chr6 99422745 99422804 -50094233 + (T)n Simple_repeat Simple_repeat 1 59 0 6 1343 1134 63 14 0 chr6 99422804 99422947 -50094090 - B1_Mm SINE Alu 0 147 3 6 1343 494 250 12 111 chr6 99423354 99423525 -50093512 + RSINE1 SINE B4 11 164 -1 6 1343 1328 85 21 26 chr6 99423568 99423762 -50093275 + B2_Mm2 SINE B2 1 193 -2 6 1343 308 281 24 47 chr6 99423937 99424064 -50092973 + GA-rich Low_complexity Low_complexity 2 125 0 6 1343 1075 277 21 32 chr6 99424741 99425024 -50092013 + B4A SINE B4 1 280 -12 6 1343 459 284 19 84 chr6 99425990 99426144 -50090893 - RSINE1 SINE B4 -14 151 8 6 1343 451 215 190 0 chr6 99426168 99426289 -50090748 - B1F1 SINE Alu -5 144 1 6 1343 524 271 54 50 chr6 99426453 99426694 -50090343 + L1MA6 LINE L1 6055 6296 -4 6 1343 26 0 0 0 chr6 99426713 99426739 -50090298 + AT_rich Low_complexity Low_complexity 1 26 0 6 1343 518 282 108 39 chr6 99426746 99426847 -50090190 + B4 SINE B4 3 103 -189 6 1343 186 43 0 0 chr6 99426847 99426870 -50090167 + (GGAAA)n Simple_repeat Simple_repeat 3 25 0 6 1343 518 282 108 39 chr6 99426870 99427026 -50090011 + B4 SINE B4 104 277 -15 6 1343 240 35 0 0 chr6 99427026 99427055 -50089982 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1343 246 149 11 204 chr6 99427133 99427226 -50089811 + ID2 SINE ID 2 76 -7 6 1343 297 317 12 0 chr6 99427740 99427822 -50089215 - MamRep137 DNA TcMar? -358 86 4 6 1343 1083 102 0 0 chr6 99428747 99428884 -50088153 + B1_Mus2 SINE Alu 1 137 -10 6 1343 453 19 0 0 chr6 99430124 99430178 -50086859 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1343 407 287 34 11 chr6 99430306 99430473 -50086564 - L1MB7 LINE L1 -62 6116 5951 6 1343 704 287 76 24 chr6 99430533 99430822 -50086215 - L1MB7 LINE L1 -337 5847 5544 6 1343 392 240 59 5 chr6 99430964 99431102 -50085935 - L1MB7 LINE L1 -826 5320 5179 6 1343 258 299 0 44 chr6 99431259 99431350 -50085687 - L1MB7 LINE L1 -1290 4856 4770 6 1343 318 299 51 22 chr6 99431378 99431515 -50085522 - ID_B1 SINE B4 -13 211 71 6 1343 432 255 127 57 chr6 99431523 99431681 -50085356 - L1MB7 LINE L1 -1396 4750 4582 6 1343 586 254 8 8 chr6 99431682 99431809 -50085228 - RSINE1 SINE B4 -37 128 2 6 1343 417 303 50 22 chr6 99432602 99432784 -50084253 + Tigger5 DNA MER2_type 42 228 -2178 6 1343 775 118 15 0 chr6 99433950 99434085 -50082952 + (GGGA)n Simple_repeat Simple_repeat 4 140 0 6 1343 680 243 192 28 chr6 99434113 99434363 -50082674 + B4 SINE B4 2 292 0 6 1343 276 326 0 0 chr6 99434363 99434455 -50082582 + (CA)n Simple_repeat Simple_repeat 1 92 0 6 1343 1158 88 0 0 chr6 99436649 99436796 -50080241 - B1_Mus1 SINE Alu 0 148 2 6 1343 801 267 15 0 chr6 99436836 99437042 -50079995 + ID_B1 SINE B4 5 213 -11 6 1343 207 0 0 0 chr6 99437042 99437065 -50079972 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1343 468 226 36 36 chr6 99437218 99437356 -50079681 + B1F2 SINE Alu 12 149 0 6 1343 251 289 96 9 chr6 99437359 99437474 -50079563 + ID4_ SINE ID 2 126 -26 6 1343 237 277 56 91 chr6 99438117 99438260 -50078777 + YREP_Mm Unknown Unknown 159 296 -1516 6 1343 734 169 50 29 chr6 99438134 99438274 -50078763 - B1F2 SINE Alu -1 148 6 6 1343 570 245 26 90 chr6 99438428 99438661 -50078376 - ID_B1 SINE B4 -6 218 1 6 1343 265 346 47 0 chr6 99439398 99439505 -50077532 - MamSINE1 SINE tRNA -142 148 37 6 1343 182 37 0 36 chr6 99441104 99441132 -50075905 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1343 235 305 40 63 chr6 99441134 99441260 -50075777 + MamGypLTR1c LTR Gypsy 32 154 -649 6 1343 501 326 0 0 chr6 99441256 99441397 -50075640 + ID_B1 SINE B4 84 224 0 6 1343 569 250 203 0 chr6 99441413 99441561 -50075476 + B3 SINE B2 1 178 -38 6 1343 240 196 0 0 chr6 99441562 99441613 -50075424 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1343 208 143 0 0 chr6 99441967 99442002 -50075035 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1343 407 278 57 93 chr6 99443026 99443220 -50073817 + MIR SINE MIR 7 193 -69 6 1343 216 192 27 27 chr6 99443636 99443711 -50073326 + GA-rich Low_complexity Low_complexity 2 76 0 6 1343 351 65 0 0 chr6 99443736 99443782 -50073255 + (GGGA)n Simple_repeat Simple_repeat 3 48 0 6 1343 949 219 61 65 chr6 99444420 99444683 -50072354 + B4A SINE B4 7 268 -24 6 1343 207 0 0 0 chr6 99444685 99444708 -50072329 + (TC)n Simple_repeat Simple_repeat 1 23 0 6 1343 198 0 0 0 chr6 99444708 99444729 -50072308 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1343 351 60 45 0 chr6 99444729 99444796 -50072241 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1343 231 301 64 25 chr6 99446120 99446277 -50070760 - BLACKJACK DNA AcHobo -376 2568 2406 6 1343 472 332 47 49 chr6 99446442 99446828 -50070209 - BLACKJACK DNA AcHobo -744 2200 1816 6 1343 486 33 0 0 chr6 99446854 99446914 -50070123 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1343 412 315 84 15 chr6 99446981 99447184 -50069853 - B4A SINE B4 -69 223 7 6 1343 857 289 99 46 chr6 99447305 99447930 -50069107 - BLACKJACK DNA AcHobo -1269 1675 1018 6 1343 543 239 172 0 chr6 99448071 99448251 -50068786 + ID_B1 SINE B4 3 213 -11 6 1343 207 0 0 0 chr6 99448251 99448274 -50068763 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 6 1343 478 284 55 33 chr6 99448743 99448977 -50068060 - Lx6 LINE L1 -1570 5890 5629 6 1343 1268 239 59 15 chr6 99449165 99449505 -50067532 - MTD LTR MaLR -23 396 42 6 1343 198 0 0 0 chr6 99449849 99449871 -50067166 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1343 243 0 0 0 chr6 99449871 99449897 -50067140 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 1343 899 266 48 22 chr6 99449911 99450180 -50066857 - B4A SINE B4 -11 281 6 7 1343 948 173 5 57 chr6 99450788 99450997 -50066040 + URR1B DNA MER1_type 28 225 0 7 1343 1262 236 120 19 chr6 99451375 99451841 -50065196 + L1MB8 LINE L1 5513 6025 -153 7 1343 322 193 234 18 chr6 99451922 99452033 -50065004 + Tigger7 DNA MER2_type 2248 2382 -109 7 1343 246 373 28 37 chr6 99452544 99452761 -50064276 - MIR SINE MIR -21 241 27 7 1343 342 98 0 0 chr6 99453209 99453260 -50063777 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1343 201 114 45 0 chr6 99454370 99454414 -50062623 + T-rich Low_complexity Low_complexity 1 46 0 7 1343 183 115 18 55 chr6 99454434 99454489 -50062548 + T-rich Low_complexity Low_complexity 1 53 0 7 1343 676 172 9 0 chr6 99454489 99454605 -50062432 - B1_Mur4 SINE Alu 0 150 34 7 1343 510 229 25 17 chr6 99454621 99454741 -50062296 - B1F SINE Alu -28 121 1 7 1343 282 143 0 0 chr6 99455839 99455888 -50061149 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 7 1343 1025 254 19 11 chr6 99455998 99456265 -50060772 + B4 SINE B4 8 276 -16 7 1343 264 270 14 0 chr6 99458321 99458395 -50058642 + ID4 SINE ID 2 76 -7 7 1343 497 273 85 24 chr6 99458427 99458592 -50058445 + B4A SINE B4 3 177 -115 7 1343 242 326 31 10 chr6 99458507 99458603 -50058434 + PB1D9 SINE Alu 8 105 -15 7 1343 694 248 47 52 chr6 99461094 99461307 -50055730 + B3 SINE B2 1 212 -4 7 1343 288 0 0 0 chr6 99461524 99461556 -50055481 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1343 524 274 48 51 chr6 99464072 99464364 -50052673 + B4A SINE B4 2 292 0 7 1343 225 262 0 0 chr6 99464434 99464495 -50052542 + CT-rich Low_complexity Low_complexity 2 62 0 7 1343 230 0 33 0 chr6 99464496 99464526 -50052511 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1343 785 147 13 59 chr6 99464554 99464706 -50052331 + B1_Mus1 SINE Alu 4 148 0 7 1343 201 121 0 0 chr6 99465391 99465424 -50051613 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 7 1343 318 134 0 0 chr6 99466863 99466930 -50050107 + (A)n Simple_repeat Simple_repeat 1 67 0 7 1343 213 270 16 0 chr6 99467597 99467660 -50049377 + GA-rich Low_complexity Low_complexity 1 64 0 7 1343 234 0 0 0 chr6 99468633 99468659 -50048378 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1343 285 146 0 0 chr6 99468964 99469012 -50048025 + (A)n Simple_repeat Simple_repeat 1 48 0 7 1343 195 139 0 0 chr6 99469736 99469772 -50047265 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1343 258 32 0 0 chr6 99470635 99470666 -50046371 + (CCG)n Simple_repeat Simple_repeat 2 32 0 7 1343 23 0 0 0 chr6 99472277 99472300 -50044737 + GC_rich Low_complexity Low_complexity 1 23 0 7 1343 321 135 0 0 chr6 99472392 99472444 -50044593 + (T)n Simple_repeat Simple_repeat 1 52 0 7 1343 275 253 13 0 chr6 99472593 99472668 -50044369 + (CG)n Simple_repeat Simple_repeat 1 76 0 7 1343 26 82 0 0 chr6 99472747 99472808 -50044229 + GC_rich Low_complexity Low_complexity 1 61 0 7 1343 327 104 0 0 chr6 99475524 99475572 -50041465 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1343 261 0 0 0 chr6 99477003 99477032 -50040005 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1343 242 280 13 26 chr6 99477049 99477126 -50039911 - B4 SINE B4 -49 243 168 7 1343 428 301 126 91 chr6 99477237 99477500 -50039537 - B4A SINE B4 -18 274 3 7 1343 270 0 0 0 chr6 99477514 99477544 -50039493 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1343 746 215 6 58 chr6 99477579 99477752 -50039285 + B3A SINE B2 29 192 -6 7 1343 434 238 6 122 chr6 99477790 99477962 -50039075 + B4A SINE B4 1 152 -140 7 1343 357 253 12 0 chr6 99478034 99478117 -50038920 + PB1D10 SINE Alu 6 89 -28 7 1343 252 0 0 0 chr6 99479424 99479452 -50037585 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1343 701 285 77 46 chr6 99479492 99479819 -50037218 + L1MC4a LINE L1 6551 6887 -995 7 1343 319 162 300 0 chr6 99480431 99480511 -50036526 - PB1D10 SINE Alu -5 112 9 7 1343 980 259 104 22 chr6 99480732 99481001 -50036036 - B4 SINE B4 0 292 2 7 1343 204 125 0 0 chr6 99481775 99481807 -50035230 + (CG)n Simple_repeat Simple_repeat 2 33 0 7 1343 842 259 100 13 chr6 99481829 99482068 -50034969 - B4 SINE B4 -28 264 5 7 1343 304 262 0 0 chr6 99482162 99482223 -50034814 + B1F SINE Alu 1 61 -88 7 1343 207 222 0 22 chr6 99482230 99482276 -50034761 + GA-rich Low_complexity Low_complexity 3 47 0 7 1343 462 242 191 0 chr6 99482386 99482564 -50034473 - MER20 DNA MER1_type -7 212 1 7 1343 187 347 41 0 chr6 99483361 99483459 -50033578 - L2a LINE L2 -3 3423 3322 7 167 399 21 0 0 chr6 99483605 99483653 -50033384 + (TC)n Simple_repeat Simple_repeat 1 48 0 7 1344 742 142 48 41 chr6 99483659 99483806 -50033231 - B4 SINE B4 -137 155 8 7 1344 436 175 17 46 chr6 99484099 99484273 -50032764 + GA-rich Low_complexity Low_complexity 4 172 0 7 1344 360 321 42 21 chr6 99485185 99485328 -50031709 - RSINE1 SINE B4 -17 148 3 7 1344 180 350 39 0 chr6 99485334 99485437 -50031600 + L2c LINE L2 3054 3160 -227 7 1344 774 147 140 0 chr6 99485720 99485863 -50031174 + B2_Mm2 SINE B2 1 163 -32 7 1344 622 281 35 103 chr6 99485879 99486169 -50030868 + RLTR11A2 LTR ERVK 1 270 -257 7 1344 235 263 90 66 chr6 99486224 99486346 -50030691 + RLTR11A2 LTR ERVK 271 395 -58 7 1344 538 271 108 20 chr6 99486438 99486641 -50030396 + B4 SINE B4 3 223 -69 7 1344 203 79 0 26 chr6 99486643 99486682 -50030355 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 7 1344 271 355 0 13 chr6 99486683 99486760 -50030277 + B4 SINE B4 217 292 0 7 1344 606 28 0 0 chr6 99486793 99486865 -50030172 + (GGAA)n Simple_repeat Simple_repeat 4 75 0 7 1344 329 244 31 47 chr6 99487343 99487668 -50029369 + (CATATA)n Simple_repeat Simple_repeat 1 319 0 7 1344 209 133 9 84 chr6 99487832 99487939 -50029098 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 7 1344 333 0 0 0 chr6 99488448 99488485 -50028552 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1344 28 0 0 0 chr6 99489189 99489217 -50027820 + AT_rich Low_complexity Low_complexity 1 28 0 7 1344 186 118 0 0 chr6 99490132 99490166 -50026871 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1344 220 169 0 48 chr6 99491724 99491786 -50025251 + C-rich Low_complexity Low_complexity 5 63 0 7 1344 418 347 61 33 chr6 99492199 99492542 -50024495 - ORR1E LTR MaLR -8 362 19 7 1344 249 33 0 0 chr6 99492858 99492888 -50024149 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1344 761 120 26 23 chr6 99492897 99493051 -50023986 - B2_Mm2 SINE B2 -47 169 2 7 1344 470 302 104 48 chr6 99493299 99493818 -50023219 + L1MD2 LINE L1 223 770 -5630 7 1344 616 121 27 48 chr6 99494365 99494512 -50022525 + L1_Mus3 LINE L1 6495 6638 0 7 1344 22 0 0 0 chr6 99494512 99494534 -50022503 + AT_rich Low_complexity Low_complexity 1 22 0 7 1344 189 0 0 0 chr6 99495024 99495045 -50021992 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 7 1344 796 242 55 24 chr6 99495045 99495255 -50021782 + B3 SINE B2 14 211 -5 7 1344 672 276 81 18 chr6 99495354 99495816 -50021221 + L1MD2 LINE L1 3609 4091 -2228 7 1344 243 0 0 0 chr6 99495816 99495843 -50021194 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1344 498 228 122 0 chr6 99496064 99496187 -50020850 - B1F SINE Alu -2 147 10 7 1344 441 0 0 0 chr6 99496380 99496429 -50020608 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1344 1286 76 35 0 chr6 99496430 99496602 -50020435 - B2_Mm2 SINE B2 -16 179 2 7 1344 268 262 130 23 chr6 99496668 99496912 -50020125 + L1MD2 LINE L1 4789 5068 -1251 7 1344 30 59 0 14 chr6 99497028 99497044 -50019993 + AT_rich Low_complexity Low_complexity 1 16 0 7 1344 1312 79 40 0 chr6 99497044 99497221 -50019816 - B2_Mm2 SINE B2 -10 185 2 7 1344 30 59 0 14 chr6 99497221 99497273 -50019764 + AT_rich Low_complexity Low_complexity 1 52 0 7 1344 547 311 84 18 chr6 99497340 99497772 -50019265 + L1MD2 LINE L1 5432 5899 -718 7 1344 537 16 0 0 chr6 99497825 99497887 -50019150 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 1344 633 272 53 29 chr6 99497925 99498204 -50018833 + L1MD2 LINE L1 5882 6168 -349 7 1344 1759 161 0 3 chr6 99498711 99498998 -50018039 + ORR1B2 LTR MaLR 5 290 -77 7 1344 573 49 12 0 chr6 99498993 99499074 -50017963 + B1_Mm SINE Alu 66 147 0 7 1344 474 120 0 0 chr6 99499075 99499150 -50017887 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 7 1344 487 57 29 0 chr6 99499155 99499225 -50017812 + ORR1B2 LTR MaLR 296 367 0 7 1344 262 105 0 0 chr6 99499226 99499264 -50017773 + ORR1B2-int LTR MaLR 2 39 -1753 7 1344 343 154 0 0 chr6 99499272 99499337 -50017700 + ORR1B2-int LTR MaLR 527 591 -918 7 1344 3266 138 5 7 chr6 99499335 99499891 -50017146 + ORR1B1-int LTR MaLR 60 614 -895 7 1344 318 219 82 0 chr6 99499927 99500000 -50017037 + B1_Mus2 SINE Alu 2 80 -67 7 1344 4362 153 9 36 chr6 99500021 99500803 -50016234 + ORR1B1-int LTR MaLR 749 1509 0 1 1344 2054 149 15 67 chr6 99500803 99501157 -50015880 + ORR1B1 LTR MaLR 1 345 -49 1 1344 5581 160 52 35 chr6 99501157 99502254 -50014783 + Lx5 LINE L1 5932 7047 -3 2 1344 862 96 15 0 chr6 99502260 99502395 -50014642 + (GGA)n Simple_repeat Simple_repeat 3 139 0 3 1344 2054 149 15 67 chr6 99502395 99502435 -50014602 + ORR1B1 LTR MaLR 346 381 -13 1 1344 497 200 9 45 chr6 99502938 99503048 -50013989 - PB1D10 SINE Alu 0 117 12 4 1344 893 276 63 20 chr6 99503680 99503935 -50013102 + B4 SINE B4 1 266 -26 5 1344 360 0 0 0 chr6 99503936 99503976 -50013061 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1344 24 32 0 0 chr6 99503990 99504021 -50013016 + AT_rich Low_complexity Low_complexity 1 31 0 7 1344 628 264 32 88 chr6 99504066 99504349 -50012688 - Charlie7a DNA MER1_type -1 271 5 8 1344 1186 258 70 50 chr6 99504571 99504930 -50012107 + MTE2a LTR MaLR 14 379 0 9 1344 1169 262 93 36 chr6 99505527 99505860 -50011177 - MTEa LTR MaLR -11 368 17 1 1344 316 143 0 28 chr6 99505906 99505978 -50011059 + G-rich Low_complexity Low_complexity 5 74 0 1 1344 288 283 85 42 chr6 99506748 99506866 -50010171 + MLT1A1 LTR MaLR 267 389 -19 1 1344 326 235 235 0 chr6 99508172 99508291 -50008746 + B1F SINE Alu 3 149 0 1 1344 1059 181 0 27 chr6 99508324 99508511 -50008526 + B3 SINE B2 34 215 -1 1 1344 737 297 43 9 chr6 99509302 99509513 -50007524 + MER58A DNA MER1_type 6 223 -1 1 1344 938 260 52 22 chr6 99509915 99510186 -50006851 + B4A SINE B4 14 292 0 1 1344 274 175 0 34 chr6 99510534 99510593 -50006444 + B3A SINE B2 68 124 -74 1 1344 216 0 0 0 chr6 99510851 99510875 -50006162 + (CG)n Simple_repeat Simple_repeat 2 25 0 1 1344 477 0 0 0 chr6 99510875 99510927 -50006110 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1344 303 256 11 34 chr6 99511276 99511365 -50005672 + PB1D10 SINE Alu 22 108 -9 2 1344 517 316 62 11 chr6 99511368 99511640 -50005397 + B4A SINE B4 1 286 -6 2 1344 236 239 0 0 chr6 99511826 99511872 -50005165 + G-rich Low_complexity Low_complexity 4 49 0 2 1344 399 191 20 37 chr6 99511910 99512323 -50004714 + G-rich Low_complexity Low_complexity 1 405 0 2 1344 725 286 63 75 chr6 99512585 99512918 -50004119 - MER44A DNA MER2_type -10 329 1 2 1344 203 192 0 55 chr6 99513023 99513054 -50003983 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1344 575 276 74 136 chr6 99513054 99513245 -50003792 - B4A SINE B4 0 292 88 2 1344 797 225 50 60 chr6 99513245 99513444 -50003593 - B3A SINE B2 0 198 2 2 1344 575 276 74 136 chr6 99513444 99513562 -50003475 - B4A SINE B4 -205 87 2 2 1344 203 192 0 55 chr6 99513562 99513585 -50003452 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1344 902 232 161 81 chr6 99513712 99514035 -50003002 + MTD LTR MaLR 24 374 -5 2 1344 282 338 94 34 chr6 99514065 99514298 -50002739 - MLT1E2 LTR MaLR -380 247 1 2 1344 309 55 82 0 chr6 99515119 99515192 -50001845 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1344 821 257 159 8 chr6 99515193 99515432 -50001605 - B4 SINE B4 0 292 18 3 1344 1140 175 53 38 chr6 99515482 99515521 -50001516 - B2_Mm2 SINE B2 -11 205 157 3 1344 387 0 0 0 chr6 99515521 99515564 -50001473 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 3 1344 1140 118 0 17 chr6 99515564 99515720 -50001317 - B2_Mm2 SINE B2 -39 156 4 3 1344 929 142 0 7 chr6 99515726 99515868 -50001169 - B1_Mm SINE Alu -6 141 1 3 1344 4733 44 14 3 chr6 99515878 99516454 -50000583 - L1Md_F2 LINE L1 0 6582 6001 3 1344 638 272 87 0 chr6 99517399 99517594 -49999443 - ID_B1 SINE B4 -8 216 5 3 1344 602 245 95 0 chr6 99517604 99517751 -49999286 + RSINE1 SINE B4 3 163 -2 3 1344 2452 64 42 0 chr6 99518102 99518415 -49998622 + ORR1A2 LTR MaLR 1 326 -1 3 1344 380 188 28 21 chr6 99518899 99519040 -49997997 + GA-rich Low_complexity Low_complexity 4 145 0 3 1344 1517 57 3 22 chr6 99519050 99519419 -49997618 + (GGGAA)n Simple_repeat Simple_repeat 1 361 0 4 1344 2247 101 9 12 chr6 99520054 99520374 -49996663 + ORR1A2 LTR MaLR 1 319 -8 4 1344 455 299 73 0 chr6 99520469 99520606 -49996431 - B1F SINE Alu -2 147 1 4 1344 435 260 0 10 chr6 99520656 99520753 -49996284 + PB1D10 SINE Alu 21 116 -1 4 1344 237 282 116 58 chr6 99520850 99521074 -49995963 + MIRb SINE MIR 8 259 -9 4 1344 361 261 0 43 chr6 99521377 99521469 -49995568 - RSINE1 SINE B4 -76 89 2 4 1344 396 171 36 45 chr6 99521781 99521891 -49995146 - RMER17A LTR ERVK -297 454 346 4 1344 705 56 0 0 chr6 99521891 99521981 -49995056 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 4 1344 909 170 18 30 chr6 99523475 99523639 -49993398 - B2_Mm2 SINE B2 -31 164 3 4 1344 726 260 87 44 chr6 99523644 99523942 -49993095 + MLT1C LTR MaLR 156 466 -1 4 1344 687 186 7 72 chr6 99524089 99524228 -49992809 + B1_Mus2 SINE Alu 2 131 -16 5 1344 225 0 0 0 chr6 99524239 99524264 -49992773 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1344 315 0 0 0 chr6 99524264 99524299 -49992738 + (CCA)n Simple_repeat Simple_repeat 1 35 0 5 1344 252 0 0 0 chr6 99524299 99524327 -49992710 + (CAA)n Simple_repeat Simple_repeat 3 30 0 5 1344 830 183 16 32 chr6 99524331 99524517 -49992520 + B2_Mm2 SINE B2 2 184 -11 5 1344 1061 243 57 8 chr6 99524706 99524951 -49992086 + B4A SINE B4 1 257 -35 5 1344 265 287 102 71 chr6 99525528 99525753 -49991284 + MamRep605 Unknown Unknown 472 703 -173 5 1344 1085 200 109 5 chr6 99525884 99526105 -49990932 + 7SK RNA RNA 1 244 -87 5 1344 214 213 16 16 chr6 99526615 99526677 -49990360 + A-rich Low_complexity Low_complexity 5 66 0 5 1344 214 70 93 0 chr6 99527418 99527461 -49989576 + GA-rich Low_complexity Low_complexity 2 48 0 5 1344 849 248 94 33 chr6 99527730 99528005 -49989032 + B4 SINE B4 1 292 0 6 1344 219 130 0 42 chr6 99528039 99528087 -49988950 + A-rich Low_complexity Low_complexity 6 51 0 6 1344 1514 229 31 49 chr6 99528298 99528684 -49988353 + MTE2b LTR MaLR 1 379 0 6 1344 324 278 54 22 chr6 99529639 99529725 -49987312 + MLT1H2 LTR MaLR 82 170 -319 6 1344 715 245 0 0 chr6 99529725 99529868 -49987169 + B3A SINE B2 1 143 -55 6 1344 381 289 0 50 chr6 99530159 99530249 -49986788 + LTR16C LTR ERVL 376 460 -29 6 1344 1364 244 49 16 chr6 99530249 99530616 -49986421 + MTE2b LTR MaLR 1 379 0 6 1344 381 289 0 50 chr6 99530616 99530645 -49986392 + LTR16C LTR ERVL 461 489 0 6 1344 360 59 0 0 chr6 99530670 99530721 -49986316 + (TC)n Simple_repeat Simple_repeat 2 52 0 6 1344 561 311 0 0 chr6 99531814 99531946 -49985091 + B1F SINE Alu 1 132 -17 6 1344 387 271 122 14 chr6 99532443 99532656 -49984381 + Charlie5 DNA MER1_type 2365 2600 -24 6 1344 5009 50 0 0 chr6 99532714 99533314 -49983723 - L1_Mm LINE L1 -283 5600 5001 7 1344 1518 81 0 23 chr6 99533315 99533531 -49983506 + L1Md_F2 LINE L1 6360 6570 -12 7 1344 333 174 0 0 chr6 99533752 99533821 -49983216 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1344 752 170 125 28 chr6 99533880 99534056 -49982981 + B2_Mm2 SINE B2 3 195 0 7 1344 332 285 97 127 chr6 99534329 99534494 -49982543 + ID_B1 SINE B4 84 246 -46 7 1344 359 317 18 18 chr6 99534494 99534658 -49982379 + GA-rich Low_complexity Low_complexity 1 164 0 7 1344 866 195 0 13 chr6 99534682 99534833 -49982204 + B1_Mur2 SINE Alu 1 149 0 7 1344 827 219 55 6 chr6 99534882 99535047 -49981990 + B3 SINE B2 2 174 -42 7 1344 441 0 0 0 chr6 99535059 99535108 -49981929 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1344 738 176 15 46 chr6 99535133 99535264 -49981773 + B1_Mur1 SINE Alu 23 149 0 7 1344 375 145 0 0 chr6 99535267 99535350 -49981687 + (A)n Simple_repeat Simple_repeat 1 83 0 8 1344 273 210 0 0 chr6 99536286 99536348 -49980689 + G-rich Low_complexity Low_complexity 4 65 0 8 1344 198 103 0 0 chr6 99536622 99536651 -49980386 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 8 1344 477 275 62 32 chr6 99536736 99536976 -49980061 + MIR SINE MIR 1 254 -14 8 1344 699 212 20 14 chr6 99537075 99537223 -49979814 - B1_Mur3 SINE Alu 0 149 1 8 1344 424 175 0 182 chr6 99537497 99537623 -49979414 + MT2B LTR ERVL 163 265 -336 8 1344 859 74 0 47 chr6 99537512 99537639 -49979398 + B1_Mus1 SINE Alu 10 130 -18 8 1344 865 234 84 81 chr6 99537955 99538239 -49978798 - B4 SINE B4 0 292 8 8 1344 371 266 48 8 chr6 99538633 99538758 -49978279 - MER5A1 DNA MER1_type -36 130 1 8 1344 705 264 117 26 chr6 99538988 99539253 -49977784 - B4A SINE B4 0 292 4 8 1344 1763 203 75 16 chr6 99540105 99540476 -49976561 - MTD LTR MaLR -14 405 13 9 1344 279 313 20 10 chr6 99540721 99540821 -49976216 - MIR SINE MIR -54 208 108 9 1344 1268 41 0 0 chr6 99540947 99541094 -49975943 - B1_Mus2 SINE Alu 0 147 1 9 1344 358 313 0 8 chr6 99541816 99541948 -49975089 - MIRc SINE MIR -122 146 16 9 1344 291 308 124 20 chr6 99542476 99542678 -49974359 - L1MB4 LINE L1 -7 6173 5951 9 1344 210 294 35 12 chr6 99542703 99542789 -49974248 - L2 LINE L2 -992 2427 2340 9 1344 577 275 175 28 chr6 99543590 99543841 -49973196 + B4A SINE B4 5 292 0 9 1344 445 229 123 51 chr6 99544011 99544149 -49972888 - B1_Mus1 SINE Alu 0 148 1 9 1344 181 131 71 14 chr6 99544649 99544719 -49972318 + (TATG)n Simple_repeat Simple_repeat 1 74 0 9 1344 305 103 29 29 chr6 99544833 99544903 -49972134 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 1344 580 292 117 25 chr6 99544988 99545185 -49971852 - B4A SINE B4 -77 215 1 1 1344 192 40 0 0 chr6 99545713 99545738 -49971299 + (CTTA)n Simple_repeat Simple_repeat 1 25 0 1 1344 1048 113 0 0 chr6 99545739 99545881 -49971156 - B1_Mur3 SINE Alu 0 149 8 1 1344 382 288 60 70 chr6 99546069 99546353 -49970684 + B4 SINE B4 1 281 -11 1 1344 216 0 0 0 chr6 99546457 99546481 -49970556 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1344 192 158 0 0 chr6 99547629 99547667 -49969370 + G-rich Low_complexity Low_complexity 2 39 0 1 1344 568 261 159 40 chr6 99547886 99548113 -49968924 - B4A SINE B4 -38 254 1 1 1344 283 277 57 38 chr6 99548252 99548357 -49968680 + MER46C DNA MER2_type 231 337 -1 1 1344 249 230 0 0 chr6 99548915 99548989 -49968048 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1344 381 319 62 28 chr6 99549046 99549191 -49967846 - RSINE1 SINE B4 -10 155 6 1 1344 423 0 0 0 chr6 99549338 99549385 -49967652 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1344 228 67 0 0 chr6 99550139 99550169 -49966868 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 1 1344 205 162 0 0 chr6 99551754 99551791 -49965246 + C-rich Low_complexity Low_complexity 1 37 0 1 1344 399 243 0 4 chr6 99553763 99553850 -49963187 - ID4 SINE ID -60 92 8 1 1344 522 31 0 0 chr6 99553971 99554035 -49963002 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1344 780 246 82 71 chr6 99554162 99554429 -49962608 + B4A SINE B4 22 291 -1 1 1344 1235 91 0 33 chr6 99555148 99555330 -49961707 + B2_Mm2 SINE B2 1 176 -19 1 1344 462 259 9 0 chr6 99555544 99555660 -49961377 + PB1D10 SINE Alu 1 117 0 1 1344 437 194 197 56 chr6 99555681 99555823 -49961214 + RSINE1 SINE B4 4 165 0 1 1344 369 0 0 0 chr6 99555837 99555878 -49961159 + (CAATA)n Simple_repeat Simple_repeat 5 45 0 1 1344 251 28 28 0 chr6 99555878 99555914 -49961123 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 1 1344 218 286 138 35 chr6 99556061 99556177 -49960860 - MIRb SINE MIR -114 154 27 1 1344 675 262 35 74 chr6 99556706 99556908 -49960129 - B3A SINE B2 0 198 5 1 1344 683 228 0 29 chr6 99556910 99557050 -49959987 + B1_Mur2 SINE Alu 4 139 -10 1 1344 432 0 0 0 chr6 99557051 99557099 -49959938 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1344 741 282 136 4 chr6 99557114 99557356 -49959681 + B4A SINE B4 1 274 -18 1 1344 252 0 0 0 chr6 99557385 99557413 -49959624 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1344 540 125 0 0 chr6 99557413 99557509 -49959528 + (GA)n Simple_repeat Simple_repeat 1 96 0 1 1344 24 32 0 0 chr6 99558815 99558846 -49958191 + AT_rich Low_complexity Low_complexity 1 31 0 1 1344 260 324 28 41 chr6 99559370 99559515 -49957522 + MIRb SINE MIR 14 156 -112 1 1344 211 268 114 23 chr6 99559577 99559665 -49957372 + MIRc SINE MIR 24 119 -149 1 1344 305 173 19 0 chr6 99560141 99560193 -49956844 - ORR1D2 LTR MaLR -309 61 9 1 1344 210 143 0 0 chr6 99560405 99560440 -49956597 + (GAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1344 234 0 0 0 chr6 99561261 99561287 -49955750 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1344 324 300 37 51 chr6 99562054 99562268 -49954769 + Helitron1Na_Mam RC Helitron 136 346 -716 1 1344 317 268 61 61 chr6 99562236 99562383 -49954654 + Helitron1Na_Mam RC Helitron 828 974 -88 1 1344 334 319 0 0 chr6 99563182 99563276 -49953761 - PB1D10 SINE Alu 0 117 24 1 1344 182 279 114 23 chr6 99566288 99566376 -49950661 - L2c LINE L2 -14 3373 3278 1 1344 996 116 20 13 chr6 99566390 99566539 -49950498 - B1_Mur4 SINE Alu 0 150 1 1 1344 204 354 45 52 chr6 99566544 99566678 -49950359 + L2c LINE L2 3255 3387 0 1 1344 409 281 176 16 chr6 99566761 99566949 -49950088 + B4 SINE B4 1 218 -74 1 1344 229 269 179 0 chr6 99567593 99567689 -49949348 - MIRb SINE MIR -115 153 35 1 1344 376 267 48 98 chr6 99568264 99568456 -49948581 + MIR3 SINE MIR 3 192 -84 1 1344 504 206 0 0 chr6 99568514 99568660 -49948377 + G-rich Low_complexity Low_complexity 1 146 0 1 1344 1269 73 0 0 chr6 99568662 99568840 -49948197 + (GAA)n Simple_repeat Simple_repeat 1 178 0 1 1344 327 25 0 0 chr6 99568840 99568880 -49948157 + (TAG)n Simple_repeat Simple_repeat 1 40 0 1 1344 259 288 14 0 chr6 99568999 99569072 -49947965 + MIRc SINE MIR 85 158 -110 1 1344 183 146 0 0 chr6 99569353 99569394 -49947643 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1344 375 23 0 0 chr6 99570734 99570778 -49946259 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1344 207 0 0 0 chr6 99570778 99570800 -49946237 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1344 180 0 0 0 chr6 99570860 99570880 -49946157 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1344 239 105 26 0 chr6 99572989 99573027 -49944010 + L3 LINE CR1 4443 4481 -8 1 1344 265 260 61 61 chr6 99573744 99573826 -49943211 - Tigger8 DNA MER2_type -492 174 93 1 1344 22 0 0 0 chr6 99575132 99575154 -49941883 + AT_rich Low_complexity Low_complexity 1 22 0 1 1344 655 33 11 11 chr6 99576696 99576787 -49940250 + (TTTC)n Simple_repeat Simple_repeat 4 94 0 1 1344 214 146 49 0 chr6 99577049 99577090 -49939947 + A-rich Low_complexity Low_complexity 3 45 0 1 1344 192 77 0 0 chr6 99577168 99577194 -49939843 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1344 272 120 20 0 chr6 99578221 99578271 -49938766 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 1 1344 953 253 31 10 chr6 99578285 99578477 -49938560 - B4 SINE B4 -21 271 76 1 1344 261 258 53 11 chr6 99578477 99578571 -49938466 + (TATATG)n Simple_repeat Simple_repeat 5 102 0 1 1344 563 169 0 26 chr6 99578572 99578724 -49938313 + (TG)n Simple_repeat Simple_repeat 1 148 0 1 1344 644 313 102 4 chr6 99578824 99579068 -49937969 - B4A SINE B4 -24 268 1 1 1344 740 274 0 20 chr6 99579085 99579286 -49937751 - B3A SINE B2 0 198 2 1 1344 247 128 0 60 chr6 99579287 99579337 -49937700 - B4 SINE B4 -197 95 49 1 1344 234 248 91 45 chr6 99580712 99580822 -49936215 - MIR3 SINE MIR -8 200 86 1 1344 229 284 11 74 chr6 99581021 99581116 -49935921 + RMER13A LTR ERVK 287 375 -485 1 1344 289 317 88 58 chr6 99581333 99581504 -49935533 + MER104 DNA Tc2 4 179 -2 1 1344 375 286 23 73 chr6 99582576 99582753 -49934284 - Tigger15a DNA TcMar -11 704 537 1 1344 254 324 8 67 chr6 99584285 99584404 -49932633 - MIR3 SINE MIR -82 126 15 1 1344 339 104 85 0 chr6 99584798 99584904 -49932133 + (CAA)n Simple_repeat Simple_repeat 2 116 0 1 1344 385 322 164 0 chr6 99585712 99585895 -49931142 - MER2 DNA MER2_type -132 213 1 1 1344 260 228 134 52 chr6 99586870 99587004 -49930033 + MIRb SINE MIR 50 194 -74 1 1344 970 234 66 45 chr6 99588001 99588287 -49928750 - B4A SINE B4 0 292 1 1 1344 234 254 44 15 chr6 99588290 99588358 -49928679 - PB1D10 SINE Alu 0 117 48 1 1344 666 37 0 0 chr6 99588766 99588847 -49928190 + (TTCC)n Simple_repeat Simple_repeat 1 81 0 1 1344 593 225 26 86 chr6 99588856 99589007 -49928030 - B1_Mus2 SINE Alu -5 142 1 1 1344 204 297 41 62 chr6 99589508 99589605 -49927432 - MIRc SINE MIR -19 249 155 1 1344 411 226 153 0 chr6 99589866 99589990 -49927047 + B1F SINE Alu 1 143 -6 1 1344 270 261 0 42 chr6 99590024 99590096 -49926941 + ID4_ SINE ID 2 70 -13 1 1344 338 283 80 57 chr6 99590120 99590296 -49926741 + MLT1K LTR MaLR 369 548 -47 1 1344 1010 222 0 24 chr6 99591028 99591240 -49925797 - B3 SINE B2 -9 207 1 1 1344 885 254 0 20 chr6 99591474 99591698 -49925339 + B3A SINE B2 2 209 -7 1 1344 2923 239 75 55 chr6 99591777 99592223 -49924814 + RCHARR1 DNA MER1_type 3 477 -497 1 1344 935 197 77 0 chr6 99592223 99592406 -49924631 + B3 SINE B2 2 198 -18 1 1344 2923 239 75 55 chr6 99592406 99592910 -49924127 + RCHARR1 DNA MER1_type 478 972 -2 1 1344 297 145 0 0 chr6 99593240 99593302 -49923735 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1344 825 180 0 32 chr6 99594832 99594987 -49922050 + B1_Mur4 SINE Alu 1 150 0 1 1344 1307 254 161 53 chr6 99595444 99595622 -49921415 + MT2B LTR ERVL 17 227 -374 1 1344 800 183 14 7 chr6 99595622 99595765 -49921272 - B1_Mur3 SINE Alu -1 148 5 1 1344 1307 254 161 53 chr6 99595765 99596114 -49920923 + MT2B LTR ERVL 228 601 0 1 1344 312 331 76 14 chr6 99596156 99596300 -49920737 + HAL1-3A_ME LINE L1 2286 2438 -420 1 1344 1199 165 14 42 chr6 99596713 99596928 -49920109 - B3 SINE B2 -7 209 1 1 1344 426 260 19 0 chr6 99597599 99597753 -49919284 + (TG)n Simple_repeat Simple_repeat 1 157 0 1 1344 545 290 6 12 chr6 99597776 99597940 -49919097 - RSINE1 SINE B4 0 165 3 1 1344 324 0 0 0 chr6 99597994 99598030 -49919007 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1344 310 309 84 32 chr6 99599519 99599673 -49917364 - MER106B DNA MER1_type -2 1057 896 1 1344 421 298 183 92 chr6 99600888 99601150 -49915887 + B4A SINE B4 5 290 -2 1 1344 232 229 24 0 chr6 99601194 99601277 -49915760 + GA-rich Low_complexity Low_complexity 2 86 0 1 1344 1014 250 22 29 chr6 99603006 99603282 -49913755 + B4A SINE B4 2 275 -17 1 1344 737 274 32 9 chr6 99604736 99604957 -49912080 - B4A SINE B4 -39 253 28 1 1344 230 286 0 117 chr6 99605056 99605167 -49911870 - B3 SINE B2 -13 203 106 1 1344 570 281 80 130 chr6 99605113 99605412 -49911625 - B4A SINE B4 -8 284 1 1 1344 1121 278 73 44 chr6 99605674 99606016 -49911021 + ORR1E LTR MaLR 1 352 -7 1 1344 537 159 101 3 chr6 99606457 99606559 -49910478 - PB1 SINE Alu -5 122 18 2 1344 401 180 11 0 chr6 99606675 99606764 -49910273 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 1344 200 200 111 0 chr6 99607385 99607430 -49909607 - L2b LINE L2 -50 3325 3276 2 1344 240 307 79 0 chr6 99608728 99608829 -49908208 - MIR SINE MIR -117 145 37 2 1344 253 239 111 22 chr6 99609104 99609194 -49907843 + MER5A1 DNA MER1_type 5 102 -64 2 1344 195 42 0 0 chr6 99609494 99609518 -49907519 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1344 430 311 36 78 chr6 99609625 99609817 -49907220 - B4A SINE B4 -105 187 4 2 1344 200 260 162 86 chr6 99610090 99610195 -49906842 + MIRb SINE MIR 125 237 -31 2 1344 281 141 174 93 chr6 99610888 99610974 -49906063 + B1_Mm SINE Alu 29 121 -26 2 1344 246 62 0 0 chr6 99610980 99611012 -49906025 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1344 181 0 33 33 chr6 99611018 99611048 -49905989 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2 1344 186 333 98 0 chr6 99611684 99611786 -49905251 - MER5A DNA MER1_type -75 114 3 2 1344 1145 214 0 5 chr6 99611874 99612071 -49904966 + B3 SINE B2 16 211 -5 2 1344 342 0 0 0 chr6 99612145 99612183 -49904854 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2 1344 608 177 35 0 chr6 99612594 99612707 -49904330 + PB1D10 SINE Alu 1 117 0 2 1344 285 29 0 0 chr6 99612738 99612772 -49904265 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1344 568 261 30 114 chr6 99614170 99614468 -49902569 - B4 SINE B4 -19 273 1 2 1344 207 175 0 0 chr6 99614603 99614643 -49902394 + (TGG)n Simple_repeat Simple_repeat 2 41 0 2 1344 276 100 0 0 chr6 99614643 99614683 -49902354 + (TCC)n Simple_repeat Simple_repeat 1 40 0 2 20 525 16 0 0 chr6 99614683 99614745 -49902292 + (CAG)n Simple_repeat Simple_repeat 1 62 0 2 1345 328 200 41 41 chr6 99615208 99615281 -49901756 - ID2 SINE ID -8 75 3 2 1345 205 345 128 49 chr6 99615996 99616261 -49900776 - L2a LINE L2 0 3426 3141 2 1345 243 0 0 0 chr6 99616807 99616834 -49900203 + (CCCCG)n Simple_repeat Simple_repeat 5 31 0 2 1345 236 325 17 8 chr6 99617060 99617178 -49899859 + (TGGA)n Simple_repeat Simple_repeat 3 121 0 2 1345 380 286 116 0 chr6 99617957 99618104 -49898933 - MIR SINE MIR -46 216 53 2 1345 218 302 30 45 chr6 99618844 99618910 -49898127 + L4 LINE RTE 1666 1730 -299 2 1345 411 229 31 39 chr6 99619380 99619507 -49897530 - MIRc SINE MIR -135 133 8 2 1345 647 214 7 26 chr6 99619732 99619885 -49897152 - MIR3 SINE MIR -10 198 55 2 1345 387 0 0 0 chr6 99619943 99619986 -49897051 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1345 201 94 0 0 chr6 99620442 99620474 -49896563 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 1345 216 342 8 0 chr6 99622232 99622349 -49894688 + (TA)n Simple_repeat Simple_repeat 2 119 0 2 1345 831 250 101 23 chr6 99623118 99623376 -49893661 - B4A SINE B4 -13 279 2 2 1345 197 77 51 0 chr6 99625344 99625383 -49891654 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 2 1345 1217 55 0 7 chr6 99625383 99625530 -49891507 - B1_Mm SINE Alu 0 147 2 2 1345 1282 67 33 17 chr6 99625640 99625821 -49891216 + B2_Mm2 SINE B2 3 186 -9 2 1345 1791 252 171 14 chr6 99625831 99626555 -49890482 + L1MC1 LINE L1 5260 6097 -236 2 1345 237 242 182 0 chr6 99626639 99626705 -49890332 + L1MC1 LINE L1 6243 6320 -13 2 1345 389 311 66 18 chr6 99626801 99626968 -49890069 + B4A SINE B4 1 175 -117 2 1345 192 250 224 0 chr6 99627535 99627611 -49889426 + L4 LINE RTE 1362 1454 -575 2 1345 22 35 0 0 chr6 99627722 99627751 -49889286 + AT_rich Low_complexity Low_complexity 1 29 0 2 1345 298 319 130 10 chr6 99628054 99628361 -49888676 + L1MEc LINE L1 105 448 -6185 2 1345 234 286 10 52 chr6 99628564 99628660 -49888377 + B1_Mur1 SINE Alu 30 121 -28 2 1345 638 265 63 25 chr6 99628576 99628735 -49888302 + B4 SINE B4 127 291 -1 2 1345 481 315 122 47 chr6 99629140 99629345 -49887692 + L1M5 LINE L1 2844 3075 -3071 2 1345 405 173 130 37 chr6 99629345 99629453 -49887584 + PB1D7 SINE Alu 1 118 -2 2 1345 481 315 122 47 chr6 99629453 99629650 -49887387 + L1M5 LINE L1 3076 3275 -2871 2 1345 384 350 128 14 chr6 99629770 99630194 -49886843 + L1MEc LINE L1 2140 2611 -4007 2 1345 678 130 0 0 chr6 99630382 99630490 -49886547 + (TTC)n Simple_repeat Simple_repeat 3 110 0 2 1345 234 207 0 0 chr6 99630487 99630545 -49886492 + CT-rich Low_complexity Low_complexity 1 58 0 2 1345 688 285 246 47 chr6 99630691 99631451 -49885586 + L1MEc LINE L1 2808 3719 -2818 2 1345 263 238 16 0 chr6 99631547 99631610 -49885427 - L1M5 LINE L1 -2379 3767 3704 2 1345 651 311 110 34 chr6 99631683 99632252 -49884785 + L1MEc LINE L1 4276 4880 -1657 2 1345 582 271 175 68 chr6 99632265 99632602 -49884435 - MTE2a LTR MaLR -1 378 6 2 1345 865 316 63 57 chr6 99632674 99633275 -49883762 + L1MEc LINE L1 4978 5582 -955 2 1345 450 257 101 81 chr6 99633284 99633432 -49883605 + RSINE1 SINE B4 13 163 -2 2 1345 305 0 50 0 chr6 99633751 99633791 -49883246 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2 1345 251 276 23 11 chr6 99633801 99633889 -49883148 + L1MEc LINE L1 5697 5785 -2391 2 1345 244 245 0 87 chr6 99634342 99634445 -49882592 - MLT1A1 LTR MaLR -314 94 1 2 1345 997 279 42 11 chr6 99634624 99634907 -49882130 - B4 SINE B4 0 292 1 2 1345 429 161 0 47 chr6 99635174 99635259 -49881778 + Lx9 LINE L1 5896 5976 -1668 2 1345 4055 231 118 35 chr6 99635305 99636389 -49880648 + Lx9 LINE L1 6138 7311 -333 2 1345 550 182 52 7 chr6 99636444 99636599 -49880438 + Lx9 LINE L1 7480 7641 -3 2 1345 747 247 32 0 chr6 99636982 99637140 -49879897 + B3A SINE B2 1 163 -35 2 1345 307 258 86 57 chr6 99637640 99637685 -49879352 - L1MB7 LINE L1 -97 6087 6043 2 1345 1357 95 11 0 chr6 99637685 99637874 -49879163 - B2_Mm1t SINE B2 -1 192 2 2 1345 307 258 86 57 chr6 99637874 99637968 -49879069 - L1MB7 LINE L1 -142 6042 5945 2 1345 234 360 126 38 chr6 99638178 99638337 -49878700 - MamGypLTR1d LTR Gypsy -19 794 622 2 1345 268 188 47 0 chr6 99639328 99639392 -49877645 + (TCTG)n Simple_repeat Simple_repeat 3 69 0 2 1345 829 256 91 47 chr6 99639830 99640105 -49876932 + B4 SINE B4 1 287 -5 2 1345 191 233 70 0 chr6 99640208 99640251 -49876786 + MIRb SINE MIR 215 260 -8 2 1345 278 245 306 0 chr6 99640797 99640895 -49876142 + MER5A1 DNA MER1_type 1 128 -38 2 1345 272 330 26 34 chr6 99640958 99641057 -49875980 - PB1D10 SINE Alu -40 109 9 2 1345 219 139 0 0 chr6 99641330 99641366 -49875671 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1345 321 140 0 0 chr6 99642289 99642346 -49874691 + (CGG)n Simple_repeat Simple_repeat 1 57 0 2 1345 43 47 0 0 chr6 99642503 99642567 -49874470 + GC_rich Low_complexity Low_complexity 1 64 0 2 1345 40 21 0 0 chr6 99642911 99642958 -49874079 + GC_rich Low_complexity Low_complexity 1 47 0 2 1345 25 0 0 0 chr6 99643467 99643492 -49873545 + GC_rich Low_complexity Low_complexity 1 25 0 2 1345 23 0 0 0 chr6 99644069 99644092 -49872945 + AT_rich Low_complexity Low_complexity 1 23 0 2 1345 439 211 73 8 chr6 99645199 99645323 -49871714 - B4A SINE B4 -20 272 141 2 1345 238 259 17 0 chr6 99645361 99645419 -49871618 - B4A SINE B4 -230 62 4 2 1345 252 304 0 0 chr6 99645421 99645490 -49871547 + ID4 SINE ID 2 70 -13 2 1345 310 325 115 41 chr6 99646738 99646860 -49870177 - RSINE1 SINE B4 -1 164 34 2 1345 859 167 7 0 chr6 99646966 99647104 -49869933 - B1_Mus1 SINE Alu -9 139 1 2 1345 258 56 0 0 chr6 99647500 99647536 -49869501 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1345 268 277 24 104 chr6 99648708 99648833 -49868204 + MLT1L LTR MaLR 310 424 -186 2 1345 1091 176 102 5 chr6 99648870 99649076 -49867961 - URR1A DNA MER1_type 0 226 1 2 1345 682 323 25 47 chr6 99649209 99649488 -49867549 + B4A SINE B4 20 292 0 2 1345 331 295 0 0 chr6 99649528 99649606 -49867431 + B4 SINE B4 211 288 -4 2 1345 608 234 27 20 chr6 99649777 99649790 -49867247 - B1_Mur1 SINE Alu 0 149 137 2 1345 342 0 0 0 chr6 99649790 99649828 -49867209 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 1345 608 234 27 20 chr6 99649828 99649962 -49867075 - B1_Mur1 SINE Alu -13 136 1 2 1345 554 293 48 151 chr6 99650063 99650482 -49866555 + ORR1E LTR MaLR 6 366 -8 2 1345 788 210 146 56 chr6 99651760 99652027 -49865010 + B4A SINE B4 2 292 0 2 1345 642 79 0 0 chr6 99652037 99652126 -49864911 + (CA)n Simple_repeat Simple_repeat 1 89 0 2 1345 231 270 0 16 chr6 99652128 99652141 -49864896 + polypurine Low_complexity Low_complexity 2 14 0 2 1345 345 47 0 0 chr6 99652141 99652184 -49864853 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 1345 231 270 0 16 chr6 99652184 99652234 -49864803 + polypurine Low_complexity Low_complexity 15 64 0 2 1345 338 274 12 0 chr6 99652244 99652328 -49864709 + BC1_Mm scRNA scRNA 1 85 -67 2 1345 2354 111 80 30 chr6 99653320 99653720 -49863317 + RLTR11B LTR ERVK 1 420 -33 2 1345 589 213 20 87 chr6 99653950 99654099 -49862938 - ID_B1 SINE B4 -2 222 84 2 1345 235 333 9 62 chr6 99654002 99654114 -49862923 - MT2B2 LTR ERVL -327 257 152 2 1345 408 191 91 49 chr6 99654113 99654241 -49862796 - B3 SINE B2 0 216 36 2 1345 2390 94 9 3 chr6 99654241 99654562 -49862475 + ORR1A2 LTR MaLR 5 327 0 2 1345 363 152 40 89 chr6 99654562 99654597 -49862440 - B3 SINE B2 -181 35 1 2 1345 1179 148 71 0 chr6 99655290 99655486 -49861551 - MTC LTR MaLR -3 418 209 2 1345 873 89 0 0 chr6 99655488 99655612 -49861425 + (TTCC)n Simple_repeat Simple_repeat 3 126 0 2 1345 1094 23 8 0 chr6 99655638 99655770 -49861267 - B1_Mm SINE Alu 0 147 15 2 1345 555 200 183 0 chr6 99655782 99655902 -49861135 - MTC LTR MaLR -240 181 40 2 1345 240 308 34 114 chr6 99655948 99656036 -49861001 - RSINE1 SINE B4 -83 82 2 2 1345 737 192 0 46 chr6 99656059 99656212 -49860825 + B1_Mus1 SINE Alu 2 147 -1 2 1345 896 265 16 78 chr6 99656703 99657010 -49860027 - B4A SINE B4 -2 290 3 2 1345 1496 74 0 5 chr6 99657085 99657276 -49859761 + B2_Mm2 SINE B2 2 191 -4 2 1345 663 13 0 0 chr6 99658040 99658116 -49858921 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1345 317 330 38 0 chr6 99658260 99658366 -49858671 + MER5B DNA MER1_type 1 110 -68 2 1345 278 250 96 21 chr6 99658409 99658503 -49858534 + PB1D10 SINE Alu 1 101 -16 3 1345 516 120 387 63 chr6 99658626 99658768 -49858269 + B2_Mm2 SINE B2 2 189 -6 3 1345 281 306 109 7 chr6 99658869 99659007 -49858030 + L1MA8 LINE L1 6132 6283 -8 3 1345 633 224 53 52 chr6 99659491 99659719 -49857318 - MTEa LTR MaLR 0 379 133 3 1345 257 275 0 28 chr6 99660075 99660146 -49856891 + B4 SINE B4 3 71 -221 3 1345 249 33 0 0 chr6 99661953 99661983 -49855054 + (CGGGG)n Simple_repeat Simple_repeat 4 33 0 3 1345 183 80 0 0 chr6 99662163 99662188 -49854849 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1345 940 270 26 19 chr6 99662583 99662851 -49854186 - B4A SINE B4 -19 273 4 3 1345 315 65 0 0 chr6 99662950 99662996 -49854041 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1345 199 232 72 0 chr6 99663055 99663124 -49853913 - MIR SINE MIR -118 144 71 3 1345 369 109 0 0 chr6 99663190 99663245 -49853792 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1345 987 236 41 34 chr6 99663302 99663569 -49853468 - B4A SINE B4 -18 274 6 3 1345 267 346 37 0 chr6 99663968 99664049 -49852988 + PB1D7 SINE Alu 2 85 -35 3 1345 477 0 0 0 chr6 99664051 99664104 -49852933 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1345 217 250 16 16 chr6 99664399 99664460 -49852577 + CT-rich Low_complexity Low_complexity 1 61 0 3 1345 480 269 114 23 chr6 99664879 99665054 -49851983 + MER20 DNA MER1_type 1 191 -28 3 1345 549 157 9 47 chr6 99665729 99665836 -49851201 + PB1D10 SINE Alu 15 117 0 3 1345 308 206 47 16 chr6 99665845 99665909 -49851128 + ID4_ SINE ID 4 69 -14 3 1345 468 51 0 0 chr6 99665914 99665973 -49851064 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1345 389 246 70 23 chr6 99665987 99666116 -49850921 + L1MD1 LINE L1 6028 6162 -80 3 1345 184 203 43 0 chr6 99666525 99666594 -49850443 + GA-rich Low_complexity Low_complexity 1 72 0 3 1345 519 255 197 4 chr6 99666625 99666869 -49850168 + B4A SINE B4 1 291 -1 3 1345 216 324 122 0 chr6 99666928 99667002 -49850035 + ID4 SINE ID 1 83 0 3 1345 338 221 2 0 chr6 99667444 99667528 -49849509 - PB1D10 SINE Alu -47 101 16 3 1345 259 138 0 49 chr6 99668311 99668372 -49848665 + (CCCCG)n Simple_repeat Simple_repeat 1 58 0 3 1345 894 305 82 56 chr6 99668740 99668856 -49848181 + L1M2 LINE L1 1963 2062 -4787 3 1345 1116 88 0 0 chr6 99668856 99669003 -49848034 + B1_Mus2 SINE Alu 1 147 0 3 1345 894 305 82 56 chr6 99669003 99669671 -49847366 + L1M2 LINE L1 2063 2767 -4082 3 1345 835 189 115 0 chr6 99670078 99670269 -49846768 + ORR1D1 LTR MaLR 1 213 -161 3 1345 377 261 0 32 chr6 99670293 99670388 -49846649 + B4A SINE B4 2 93 -199 3 1345 211 220 0 0 chr6 99671497 99671547 -49845490 + A-rich Low_complexity Low_complexity 1 50 0 3 1345 266 239 55 33 chr6 99671991 99672082 -49844955 + PB1D10 SINE Alu 24 116 -1 3 1345 955 301 18 25 chr6 99672728 99673007 -49844030 + B4 SINE B4 16 292 0 3 1345 195 100 0 0 chr6 99673874 99673904 -49843133 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3 1345 1172 68 7 0 chr6 99673982 99674129 -49842908 + B1_Mus1 SINE Alu 1 148 0 3 1345 186 43 0 0 chr6 99674188 99674211 -49842826 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3 1345 231 61 0 0 chr6 99674681 99674714 -49842323 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1345 202 200 0 0 chr6 99676258 99676293 -49840744 + (CAG)n Simple_repeat Simple_repeat 2 36 0 3 1345 456 281 70 25 chr6 99679232 99679389 -49837648 + MLT1C LTR MaLR 7 170 -297 3 1345 183 220 0 0 chr6 99679413 99679463 -49837574 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1345 860 232 53 91 chr6 99679479 99679764 -49837273 - B4 SINE B4 -13 279 6 3 1345 287 281 25 40 chr6 99679798 99679969 -49837068 + MLT1C LTR MaLR 283 463 -4 3 1345 204 287 0 0 chr6 99680300 99680363 -49836674 - L2b LINE L2 0 3426 3329 3 1345 3406 41 0 0 chr6 99680749 99681143 -49835894 - MTA_Mm LTR MaLR 0 396 3 3 1345 479 17 17 0 chr6 99681144 99681204 -49835833 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 3 1345 236 275 74 12 chr6 99681260 99681341 -49835696 + MER58B DNA MER1_type 255 340 -1 3 1345 930 216 43 39 chr6 99681381 99681612 -49835425 - B4 SINE B4 -6 286 55 3 1345 24 0 0 0 chr6 99682500 99682524 -49834513 + AT_rich Low_complexity Low_complexity 1 24 0 3 1345 24 0 0 0 chr6 99682772 99682796 -49834241 + AT_rich Low_complexity Low_complexity 1 24 0 3 1345 348 175 0 16 chr6 99683112 99683176 -49833861 + B1F SINE Alu 1 63 -86 3 1345 189 0 0 0 chr6 99683733 99683754 -49833283 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 3 1345 387 0 0 0 chr6 99684245 99684288 -49832749 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1345 424 337 100 12 chr6 99684394 99684643 -49832394 + B4A SINE B4 8 278 -14 3 1345 435 19 0 0 chr6 99685127 99685179 -49831858 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1345 414 287 191 30 chr6 99685179 99685409 -49831628 - B4A SINE B4 -23 269 3 3 1345 22 0 0 0 chr6 99685433 99685455 -49831582 + AT_rich Low_complexity Low_complexity 1 22 0 3 1345 492 183 16 39 chr6 99685607 99685789 -49831248 + CT-rich Low_complexity Low_complexity 3 180 0 3 1345 436 280 200 16 chr6 99685809 99685994 -49831043 - ID_B1 SINE B4 -4 220 2 3 1345 264 291 58 10 chr6 99686251 99686355 -49830682 - L1MA6 LINE L1 -75 6225 6117 3 1345 335 261 30 30 chr6 99686931 99687106 -49829931 + MER2 DNA MER2_type 97 344 -1 3 1345 361 217 36 7 chr6 99687234 99687373 -49829664 + CT-rich Low_complexity Low_complexity 6 148 0 3 1345 21 0 0 0 chr6 99687704 99687725 -49829312 + AT_rich Low_complexity Low_complexity 1 21 0 3 1345 927 228 23 62 chr6 99687763 99687841 -49829196 + B4 SINE B4 1 78 -214 3 1345 3056 66 12 12 chr6 99687841 99688241 -49828796 - MTB LTR MaLR 0 400 1 3 1345 927 228 23 62 chr6 99688241 99688466 -49828571 + B4 SINE B4 79 292 0 3 1345 212 211 0 50 chr6 99689183 99689243 -49827794 + C-rich Low_complexity Low_complexity 5 61 0 3 1345 4614 76 5 0 chr6 99690132 99690713 -49826324 + MT2B2 LTR ERVL 1 584 0 3 1345 247 247 39 0 chr6 99690803 99690880 -49826157 + PB1 SINE Alu 35 114 -13 3 1345 228 86 0 0 chr6 99690885 99690920 -49826117 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1345 1298 220 108 48 chr6 99692001 99692213 -49824824 - MTD LTR MaLR -17 402 202 3 1345 330 26 0 0 chr6 99692213 99692252 -49824785 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 3 1345 1298 220 108 48 chr6 99692252 99692411 -49824626 - MTD LTR MaLR -218 201 11 3 1345 248 154 0 19 chr6 99693391 99693444 -49823593 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1345 652 292 101 43 chr6 99693714 99693990 -49823047 + B4A SINE B4 1 292 0 3 1345 441 0 0 0 chr6 99693994 99694043 -49822994 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1345 1043 191 121 0 chr6 99694176 99694375 -49822662 - URR1A DNA MER1_type -3 223 1 3 1345 1168 131 92 39 chr6 99694406 99694613 -49822424 + URR1B DNA MER1_type 5 222 -3 3 1345 2529 169 0 9 chr6 99694978 99695403 -49821634 - MTC LTR MaLR 0 421 1 3 1345 1550 175 114 68 chr6 99695407 99695692 -49821345 + ORR1C2 LTR MaLR 1 317 -67 3 1345 1230 42 0 0 chr6 99695692 99695834 -49821203 + B1_Mus1 SINE Alu 2 143 -5 3 1345 1550 175 114 68 chr6 99695834 99695915 -49821122 + ORR1C2 LTR MaLR 318 384 0 3 1345 832 262 25 76 chr6 99696118 99696395 -49820642 - B4 SINE B4 -28 264 2 3 1345 327 85 0 0 chr6 99696774 99696821 -49820216 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 1345 882 86 8 0 chr6 99696857 99696985 -49820052 - B2_Mm2 SINE B2 -66 129 1 3 1345 288 0 0 0 chr6 99698466 99698498 -49818539 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1345 906 281 40 11 chr6 99698749 99699026 -49818011 - B4 SINE B4 -4 288 4 3 1345 297 319 106 28 chr6 99699616 99699871 -49817166 + Lx8 LINE L1 7169 7443 -30 3 1345 212 350 12 24 chr6 99699946 99700028 -49817009 + RSINE1 SINE B4 82 162 -3 3 1345 532 323 15 5 chr6 99700849 99701051 -49815986 - MER20 DNA MER1_type 0 219 16 3 1345 433 202 43 60 chr6 99701848 99701964 -49815073 - B4 SINE B4 -69 223 110 3 1345 523 174 0 0 chr6 99701970 99702062 -49814975 + MTEa LTR MaLR 288 379 0 3 1345 293 269 38 9 chr6 99702267 99702372 -49814665 - MLT1K LTR MaLR -16 579 472 3 1345 222 160 0 0 chr6 99702724 99702774 -49814263 + GA-rich Low_complexity Low_complexity 2 51 0 3 1345 777 193 57 9 chr6 99703366 99703525 -49813512 - B3 SINE B2 -4 212 45 3 1345 1072 245 35 18 chr6 99704286 99704568 -49812469 + B4A SINE B4 2 288 -4 3 1345 248 232 14 28 chr6 99704737 99704808 -49812229 - MTEa LTR MaLR -31 348 279 3 1345 236 396 33 20 chr6 99705105 99705257 -49811780 + Charlie1a DNA MER1_type 143 296 -1159 3 1345 34 0 0 0 chr6 99705560 99705594 -49811443 + AT_rich Low_complexity Low_complexity 1 34 0 3 1345 542 324 78 21 chr6 99706417 99706660 -49810377 + B4A SINE B4 36 292 0 3 1345 258 32 0 0 chr6 99706849 99706880 -49810157 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 1345 601 262 71 5 chr6 99706911 99707095 -49809942 + MER58A DNA MER1_type 29 224 0 3 1345 180 355 40 0 chr6 99707494 99707570 -49809467 + L4 LINE RTE 1758 1836 -193 3 1345 367 301 115 14 chr6 99708100 99708248 -49808789 + B4 SINE B4 1 163 -129 3 1345 1236 198 110 24 chr6 99708262 99708550 -49808487 + MTD LTR MaLR 1 368 -51 3 1345 333 0 0 0 chr6 99708550 99708587 -49808450 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1345 1236 191 99 16 chr6 99708587 99708638 -49808399 + MTD LTR MaLR 369 419 0 3 1345 309 100 27 67 chr6 99709282 99709357 -49807680 - ORR1A4 LTR MaLR -257 72 1 4 1345 484 332 62 40 chr6 99709793 99709906 -49807131 + Tigger5 DNA MER2_type 3 131 -2275 4 1345 1533 68 0 5 chr6 99709906 99710099 -49806938 - B2_Mm2 SINE B2 -2 193 2 4 1345 484 332 62 40 chr6 99710099 99710258 -49806779 + Tigger5 DNA MER2_type 132 281 -2125 4 1345 530 260 17 61 chr6 99710275 99710455 -49806582 + Tigger5 DNA MER2_type 2193 2364 -42 4 1345 374 284 0 0 chr6 99710462 99710571 -49806466 - MER53 DNA hAT -71 122 14 4 1345 1281 209 28 24 chr6 99710576 99710865 -49806172 + B4 SINE B4 1 290 -2 4 1345 618 89 0 0 chr6 99711743 99711833 -49805204 + (TG)n Simple_repeat Simple_repeat 2 91 0 4 1345 681 245 146 53 chr6 99711833 99712079 -49804958 - B4A SINE B4 -23 269 1 4 1345 330 87 0 0 chr6 99712992 99713038 -49803999 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1345 234 310 49 20 chr6 99713086 99713188 -49803849 + MLT1A1 LTR MaLR 300 404 -4 4 1345 228 356 31 1 chr6 99713434 99713593 -49803444 - MIR SINE MIR -53 215 50 4 1345 374 117 139 25 chr6 99713603 99713682 -49803355 + PB1D9 SINE Alu 33 120 0 4 1345 645 270 61 11 chr6 99714225 99714487 -49802550 + B4 SINE B4 2 276 -16 4 1345 777 128 23 11 chr6 99714555 99714729 -49802308 + (CAGAGA)n Simple_repeat Simple_repeat 2 177 0 4 1345 25 0 0 0 chr6 99715323 99715348 -49801689 + AT_rich Low_complexity Low_complexity 1 25 0 4 1345 451 277 79 14 chr6 99715381 99715520 -49801517 - RSINE1 SINE B4 -17 148 1 4 1345 180 0 0 0 chr6 99715680 99715700 -49801337 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1345 763 171 7 14 chr6 99715922 99716064 -49800973 - B1_Mur1 SINE Alu -7 142 2 4 1345 252 189 0 0 chr6 99716127 99716180 -49800857 - Lx9 LINE L1 -86 7558 7506 4 1345 505 250 58 7 chr6 99716327 99716464 -49800573 - ID_B1 SINE B4 -1 223 80 4 1345 1075 104 121 6 chr6 99716469 99716643 -49800394 - B2_Mm2 SINE B2 0 195 2 4 1345 884 219 22 0 chr6 99716742 99716920 -49800117 - B3A SINE B2 -16 182 1 4 1345 261 0 0 0 chr6 99716948 99716977 -49800060 + (CATTT)n Simple_repeat Simple_repeat 2 30 0 4 1345 212 234 0 0 chr6 99717004 99717051 -49799986 - ID4_ SINE ID -32 51 5 4 1345 771 249 10 50 chr6 99717656 99717855 -49799182 - B3A SINE B2 -5 193 3 4 1345 414 0 0 0 chr6 99718845 99718891 -49798146 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1345 270 0 0 0 chr6 99719113 99719143 -49797894 + (CATA)n Simple_repeat Simple_repeat 2 31 0 4 1345 499 314 11 11 chr6 99719290 99719467 -49797570 + (TATG)n Simple_repeat Simple_repeat 1 177 0 4 1345 726 279 83 32 chr6 99719499 99719622 -49797415 - B4A SINE B4 0 292 175 4 1345 1533 138 4 0 chr6 99719622 99719847 -49797190 + URR1A DNA MER1_type 1 226 0 4 1345 726 279 83 32 chr6 99719847 99720001 -49797036 - B4A SINE B4 -118 174 1 4 1345 522 318 56 0 chr6 99720278 99720457 -49796580 - MER3 DNA MER1_type -2 207 19 4 1345 277 276 176 19 chr6 99721393 99721552 -49795485 + MLT1H2 LTR MaLR 85 268 -221 4 1345 180 0 0 0 chr6 99721779 99721799 -49795238 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 4 1345 1116 101 40 23 chr6 99721799 99721972 -49795065 - B2_Mm2 SINE B2 -15 180 5 4 1345 22 56 0 0 chr6 99722156 99722192 -49794845 + AT_rich Low_complexity Low_complexity 1 36 0 4 1345 308 325 48 0 chr6 99722336 99722419 -49794618 + RSINE1 SINE B4 68 154 -11 4 1345 1125 152 94 5 chr6 99722509 99722701 -49794336 - B3 SINE B2 -7 209 1 4 1345 25 0 0 0 chr6 99722704 99722729 -49794308 + AT_rich Low_complexity Low_complexity 1 25 0 4 1345 953 310 72 8 chr6 99722730 99723264 -49793773 - L1MB1 LINE L1 -23 6145 5570 4 1345 883 251 123 9 chr6 99723259 99723600 -49793437 - L1MB1 LINE L1 -1512 4628 4249 4 1345 351 105 0 0 chr6 99723611 99723668 -49793369 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1345 327 319 40 63 chr6 99723775 99723949 -49793088 - L1MC5 LINE L1 -1054 6907 6738 4 1345 552 273 159 37 chr6 99724214 99724484 -49792553 + RMER20B LTR ERVK 212 514 -113 4 1345 3258 45 27 5 chr6 99725294 99725700 -49791337 - L1Md_F2 LINE L1 0 6582 6168 4 1345 256 260 35 88 chr6 99725828 99725942 -49791095 - RMER12 LTR ERVK -466 856 749 4 1345 538 250 198 16 chr6 99726036 99726223 -49790814 - B4 SINE B4 -69 223 3 4 1345 194 340 28 46 chr6 99726315 99726423 -49790614 - MIRb SINE MIR -37 231 126 4 1345 510 150 89 0 chr6 99726423 99726541 -49790496 + B1_Mur1 SINE Alu 2 142 -7 4 1345 190 360 40 13 chr6 99726552 99726628 -49790409 - MIR SINE MIR -172 90 13 4 1345 3440 38 2 0 chr6 99728129 99728524 -49788513 + MTA_Mm LTR MaLR 1 396 0 4 1345 575 293 76 19 chr6 99728668 99728932 -49788105 + B4A SINE B4 4 282 -10 4 1345 393 204 221 45 chr6 99729231 99729245 -49787792 - B2_Mm2 SINE B2 -14 181 168 4 1345 207 0 0 0 chr6 99729245 99729268 -49787769 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1345 536 204 221 45 chr6 99729268 99729407 -49787630 - B3A SINE B2 -28 167 1 4 1345 378 0 0 0 chr6 99729771 99729813 -49787224 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1345 406 312 98 35 chr6 99729820 99729963 -49787074 - RSINE1 SINE B4 -10 155 4 4 1345 335 235 21 96 chr6 99732258 99732308 -49784729 + RSINE1 SINE B4 2 50 -115 4 1345 1382 239 189 24 chr6 99732308 99732763 -49784274 + MT2A LTR ERVL 1 530 -3 4 1345 335 235 21 96 chr6 99732763 99732806 -49784231 + RSINE1 SINE B4 51 88 -77 4 1345 1062 169 5 74 chr6 99733058 99733275 -49783762 + B3 SINE B2 1 202 -14 4 1345 301 68 68 0 chr6 99733452 99733511 -49783526 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 4 1345 209 265 0 0 chr6 99733568 99733617 -49783420 + (CTA)n Simple_repeat Simple_repeat 2 50 0 4 1345 2287 128 102 8 chr6 99734868 99735261 -49781776 + RLTR23 LTR ERV1 1 430 0 4 1345 247 382 16 16 chr6 99735815 99735940 -49781097 - MIRc SINE MIR -113 155 31 4 1345 516 244 76 0 chr6 99736084 99736215 -49780822 - RSINE1 SINE B4 -23 142 2 4 1345 421 239 53 55 chr6 99736259 99736414 -49780623 + B1F SINE Alu 2 149 -1 4 1345 397 292 133 38 chr6 99737059 99737269 -49779768 + MLT1G3 LTR MaLR 59 288 -307 4 1345 286 238 24 36 chr6 99737685 99737768 -49779269 + ID4_ SINE ID 2 83 0 4 1345 285 348 99 41 chr6 99737777 99738020 -49779017 + LTR16C LTR ERVL 163 419 -70 4 1345 416 302 54 8 chr6 99738777 99738907 -49778130 + B1F2 SINE Alu 7 142 -7 4 1345 239 313 9 124 chr6 99738911 99739024 -49778013 + B4 SINE B4 70 169 -123 4 1345 340 247 10 41 chr6 99738947 99739044 -49777993 + PB1D9 SINE Alu 11 104 -16 4 1345 759 157 23 148 chr6 99739189 99739406 -49777631 - RMER1B Other Other 0 1066 877 4 1345 2011 157 34 3 chr6 99739406 99739733 -49777304 - ORR1B1 LTR MaLR 0 394 58 4 1345 3788 123 48 108 chr6 99739733 99739971 -49777066 - RMER6A LTR ERVK 0 756 502 4 1345 1033 101 6 22 chr6 99739971 99740154 -49776883 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1345 3788 123 48 108 chr6 99740154 99740701 -49776336 - RMER6A LTR ERVK -255 501 19 4 1345 370 154 15 0 chr6 99740705 99740770 -49776267 - ORR1B1 LTR MaLR -328 66 1 4 1345 1292 211 92 32 chr6 99740770 99741084 -49775953 - RMER1B Other Other -185 881 549 4 1345 335 289 0 8 chr6 99741109 99741213 -49775824 - MLT1A0 LTR MaLR -30 344 245 4 1345 500 239 59 66 chr6 99741247 99741399 -49775638 - MLT1A0 LTR MaLR -193 172 22 4 1345 742 258 26 91 chr6 99741464 99741504 -49775533 + B3 SINE B2 1 34 -182 4 1345 1392 118 0 13 chr6 99741504 99741736 -49775301 + Lx LINE L1 6421 6649 -5 4 1345 264 30 0 0 chr6 99741739 99741772 -49775265 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1345 742 258 26 91 chr6 99741772 99741957 -49775080 + B3 SINE B2 35 212 -4 4 1345 716 255 150 12 chr6 99741980 99742189 -49774848 + B4A SINE B4 5 247 -45 4 1345 351 0 0 0 chr6 99742189 99742228 -49774809 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1345 716 255 150 12 chr6 99742228 99742264 -49774773 + B4A SINE B4 248 283 -9 4 1345 777 128 0 0 chr6 99742291 99742416 -49774621 + (CA)n Simple_repeat Simple_repeat 1 125 0 4 1345 473 250 83 72 chr6 99742721 99742902 -49774135 - MER74A LTR ERVL -384 238 17 4 1345 643 311 152 63 chr6 99742902 99744186 -49772851 + L1ME2 LINE L1 69 1477 -5163 4 1345 225 0 0 0 chr6 99744186 99744211 -49772826 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 1345 578 313 152 53 chr6 99744211 99744477 -49772560 + L1ME2 LINE L1 1478 1759 -4881 4 1345 2645 196 42 38 chr6 99744629 99745181 -49771856 + RLTR20B2 LTR ERVK 1 554 -6 4 1345 375 289 164 11 chr6 99745197 99745386 -49771651 + L1ME2 LINE L1 1924 2141 -4499 4 1345 281 263 10 10 chr6 99745615 99745711 -49771326 + L1MC LINE L1 2779 2874 -3272 4 168 489 310 120 29 chr6 99745686 99746455 -49770582 + L1ME2 LINE L1 2391 3242 -3302 4 1346 333 290 91 65 chr6 99746601 99746645 -49770392 + L1ME2 LINE L1 3489 3532 -3012 4 1346 571 241 14 28 chr6 99746645 99746790 -49770247 + B1F SINE Alu 1 143 -6 4 1346 333 290 91 65 chr6 99746790 99746944 -49770093 + L1ME2 LINE L1 3533 3692 -2852 4 1346 516 284 122 32 chr6 99746967 99747189 -49769848 + L1ME2 LINE L1 3813 4049 -2495 4 1346 932 128 0 32 chr6 99747189 99747343 -49769694 - B1_Mur4 SINE Alu 0 150 2 4 1346 516 284 122 32 chr6 99747343 99747612 -49769425 + L1ME2 LINE L1 4050 4348 -2196 4 1346 242 264 70 23 chr6 99747667 99747795 -49769242 + L1ME2 LINE L1 4892 5025 -1519 4 1346 599 237 53 8 chr6 99748583 99748715 -49768322 + B1F SINE Alu 11 148 -1 4 1346 461 280 49 11 chr6 99748717 99748901 -49768136 + L1ME2 LINE L1 5652 5842 -798 4 1346 402 279 23 34 chr6 99749140 99749339 -49767698 + L1ME2 LINE L1 6171 6367 -390 4 1346 316 309 0 0 chr6 99749459 99749527 -49767510 + B3A SINE B2 1 68 -130 4 1346 788 287 25 5 chr6 99749531 99749734 -49767303 - B4A SINE B4 -85 207 1 4 1346 342 301 61 99 chr6 99749758 99749983 -49767054 + ORR1E LTR MaLR 3 219 -165 4 1346 216 200 22 0 chr6 99750246 99750291 -49766746 + GA-rich Low_complexity Low_complexity 2 47 0 4 1346 378 0 0 0 chr6 99750780 99750822 -49766215 + (TTTTC)n Simple_repeat Simple_repeat 1 42 0 4 1346 21 0 0 0 chr6 99751005 99751026 -49766011 + GC_rich Low_complexity Low_complexity 1 21 0 4 1346 276 30 0 0 chr6 99751620 99751653 -49765384 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 1346 467 316 152 20 chr6 99751668 99751759 -49765278 + L1MC2 LINE L1 5726 5822 -511 4 1346 239 289 0 38 chr6 99751759 99751838 -49765199 + ID4 SINE ID 4 79 -4 4 1346 589 288 99 22 chr6 99751838 99752201 -49764836 + L1MC2 LINE L1 5823 6240 -93 4 1346 231 318 15 0 chr6 99752205 99752271 -49764766 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1346 1888 169 19 19 chr6 99752510 99752873 -49764164 - ORR1B2 LTR MaLR -2 365 3 4 1346 22 0 0 0 chr6 99753077 99753099 -49763938 + AT_rich Low_complexity Low_complexity 1 22 0 4 1346 2238 16 0 0 chr6 99753099 99753350 -49763687 - L1Md_A LINE L1 -1 6581 6331 4 1346 321 164 0 0 chr6 99753541 99753614 -49763423 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1346 230 155 121 0 chr6 99753794 99753852 -49763185 + L1MC2 LINE L1 6269 6333 -11 4 1346 247 294 120 42 chr6 99755610 99755752 -49761285 + MIRb SINE MIR 24 176 -92 5 1346 855 189 144 6 chr6 99756435 99756616 -49760421 - ORR1D1 LTR MaLR 0 374 169 5 1346 396 179 0 0 chr6 99756647 99756725 -49760312 + GA-rich Low_complexity Low_complexity 1 78 0 5 1346 818 159 66 7 chr6 99756725 99756877 -49760160 - ORR1D1 LTR MaLR -193 181 21 5 1346 342 269 0 37 chr6 99756975 99757056 -49759981 + RSINE1 SINE B4 5 82 -83 5 1346 752 206 52 0 chr6 99757344 99757480 -49759557 - B1_Mur1 SINE Alu 0 149 7 5 1346 319 236 111 11 chr6 99757402 99757492 -49759545 - B4A SINE B4 -119 173 75 5 1346 591 276 123 11 chr6 99757492 99757503 -49759534 - B4 SINE B4 -68 224 214 5 1346 206 0 69 0 chr6 99757503 99757532 -49759505 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1346 591 276 123 11 chr6 99757532 99757707 -49759330 - B4 SINE B4 -79 213 18 5 1346 1819 149 44 79 chr6 99757710 99758168 -49758869 + RMER10A LTR ERVL 1 442 0 5 1346 423 0 0 0 chr6 99758233 99758280 -49758757 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1346 216 200 0 0 chr6 99758760 99758810 -49758227 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1346 1181 62 0 22 chr6 99758811 99758991 -49758046 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 5 1346 668 189 0 7 chr6 99759018 99759172 -49757865 + (TA)n Simple_repeat Simple_repeat 1 153 0 5 1346 572 378 55 24 chr6 99759418 99759833 -49757204 + LTR82A LTR ERVL 24 451 -421 5 1346 594 0 0 0 chr6 99759950 99760016 -49757021 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 5 1346 1154 257 125 3 chr6 99760071 99760360 -49756677 + MTEa LTR MaLR 43 366 -13 5 1346 693 73 0 0 chr6 99760813 99760909 -49756128 + (CA)n Simple_repeat Simple_repeat 2 97 0 5 1346 2714 182 2 6 chr6 99761055 99761530 -49755507 + ORR1D2-int LTR MaLR 804 1276 -94 5 1346 311 51 0 0 chr6 99761522 99761561 -49755476 + ORR1D2 LTR MaLR 332 370 0 5 1346 898 195 250 53 chr6 99761588 99761908 -49755129 - RMER20B LTR ERVK -23 604 222 5 1346 330 237 217 9 chr6 99761930 99762045 -49754992 - RMER20B LTR ERVK -488 139 1 5 1346 201 158 26 0 chr6 99762054 99762092 -49754945 + GA-rich Low_complexity Low_complexity 2 40 0 5 1346 1190 216 51 15 chr6 99762095 99762368 -49754669 + RMER15 LTR ERVL 291 573 -2 5 1346 279 211 66 55 chr6 99762739 99762929 -49754108 + L1MEc LINE L1 1898 2129 -4973 5 1346 492 59 0 0 chr6 99762940 99763008 -49754029 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1346 387 0 0 0 chr6 99763008 99763050 -49753987 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1346 2602 270 100 30 chr6 99763175 99764068 -49752969 + Lx8 LINE L1 6420 7374 -99 5 1346 27 29 0 0 chr6 99764122 99764156 -49752881 + AT_rich Low_complexity Low_complexity 1 34 0 5 1346 232 288 93 0 chr6 99764185 99764303 -49752734 + L1MEc LINE L1 2411 2539 -4548 5 1346 338 275 161 44 chr6 99764319 99764456 -49752581 + RSINE1 SINE B4 13 165 0 5 1346 552 256 65 16 chr6 99764506 99764752 -49752285 + L1MEc LINE L1 2565 2822 -4265 5 1346 26 0 0 0 chr6 99765132 99765158 -49751879 + AT_rich Low_complexity Low_complexity 1 26 0 5 1346 232 238 0 70 chr6 99766547 99766633 -49750404 + GA-rich Low_complexity Low_complexity 5 84 0 5 1346 290 310 83 50 chr6 99766633 99766767 -49750270 + B1_Mur4 SINE Alu 11 150 0 5 1346 938 219 137 16 chr6 99767703 99767958 -49749079 + B4 SINE B4 2 287 -5 5 1346 318 236 164 0 chr6 99769106 99769216 -49747821 + MLT1H LTR MaLR 415 542 -7 5 1346 303 246 14 0 chr6 99769328 99769397 -49747640 + ORR1E LTR MaLR 1 70 -289 5 1346 480 294 47 66 chr6 99769423 99769634 -49747403 + ORR1E LTR MaLR 153 359 0 5 1346 499 257 251 38 chr6 99769832 99769874 -49747163 + MTEa LTR MaLR 1 35 -344 5 1346 1345 106 88 46 chr6 99769874 99770091 -49746946 + URR1A DNA MER1_type 1 226 0 5 1346 499 257 242 33 chr6 99770091 99770322 -49746715 + MTEa LTR MaLR 36 331 -48 5 1346 582 339 60 51 chr6 99770384 99770698 -49746339 + MER2 DNA MER2_type 2 318 -27 5 1346 1617 196 82 18 chr6 99770793 99771135 -49745902 - ORR1D2 LTR MaLR -6 364 1 5 1346 405 338 118 17 chr6 99771150 99771388 -49745649 + B4A SINE B4 3 264 -28 5 1346 22 35 0 0 chr6 99771696 99771725 -49745312 + AT_rich Low_complexity Low_complexity 1 29 0 5 1346 366 228 0 0 chr6 99771772 99771873 -49745164 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 1346 1013 247 77 11 chr6 99771874 99772148 -49744889 - B4A SINE B4 0 292 1 5 1346 233 216 0 0 chr6 99773013 99773064 -49743973 + B3 SINE B2 1 51 -165 5 1346 1936 133 43 69 chr6 99773291 99773712 -49743325 - RMER17C LTR ERVK 0 410 1 5 1346 1377 139 72 125 chr6 99773881 99774202 -49742835 - ORR1B1 LTR MaLR -69 325 22 5 1346 1245 75 116 0 chr6 99774392 99774565 -49742472 + B2_Mm1t SINE B2 1 193 0 5 1346 280 94 0 36 chr6 99774850 99774905 -49742132 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1346 420 285 181 78 chr6 99775991 99776132 -49740905 - ORR1E LTR MaLR -41 318 187 5 1346 423 0 0 0 chr6 99776132 99776179 -49740858 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1346 423 0 0 0 chr6 99776179 99776225 -49740812 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1346 420 285 181 78 chr6 99776225 99776364 -49740673 - ORR1E LTR MaLR -173 186 9 5 1346 2717 164 44 4 chr6 99776377 99776874 -49740163 - RMER5 LTR ERV1 -14 520 4 5 1346 303 278 0 14 chr6 99777034 99777107 -49739930 + B4A SINE B4 208 279 -13 5 1346 491 220 61 30 chr6 99778236 99778367 -49738670 - ID_B1 SINE B4 0 224 90 5 1346 644 334 17 40 chr6 99779098 99779195 -49737842 + MER44A DNA MER2_type 24 109 -230 5 1346 7165 27 4 2 chr6 99779195 99780012 -49737025 - L1Md_F2 LINE L1 -14 6568 5751 5 1346 644 334 17 40 chr6 99780012 99780210 -49736827 + MER44A DNA MER2_type 110 311 -28 5 1346 376 207 16 0 chr6 99780693 99780814 -49736223 + (TG)n Simple_repeat Simple_repeat 2 124 0 5 1346 516 202 0 48 chr6 99780825 99781012 -49736025 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1346 549 197 0 48 chr6 99781023 99781210 -49735827 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1346 458 323 79 58 chr6 99781368 99781734 -49735303 - MLT2F LTR ERVL -227 436 20 5 1346 210 71 0 0 chr6 99782879 99782907 -49734130 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1346 535 309 91 24 chr6 99782910 99783119 -49733918 - B4A SINE B4 -13 279 57 5 1346 618 14 0 0 chr6 99783701 99783772 -49733265 + (TCCC)n Simple_repeat Simple_repeat 1 71 0 5 1346 306 0 0 0 chr6 99783786 99783820 -49733217 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1346 412 256 138 16 chr6 99783823 99783946 -49733091 - B3A SINE B2 -59 139 2 5 1346 256 318 113 8 chr6 99784151 99784284 -49732753 + MLT1A1 LTR MaLR 1 147 -227 5 1346 474 252 77 28 chr6 99784331 99784474 -49732563 + MLT1A1 LTR MaLR 258 407 -1 5 1346 951 139 14 0 chr6 99785537 99785681 -49731356 + B1_Mur4 SINE Alu 5 150 0 5 1346 304 223 8 28 chr6 99785694 99785802 -49731235 + MTD LTR MaLR 213 419 0 5 1346 780 217 112 52 chr6 99785805 99786072 -49730965 - MLT2B4 LTR ERVL -273 283 1 5 1346 387 0 0 0 chr6 99786085 99786128 -49730909 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1346 489 238 115 0 chr6 99786144 99786266 -49730771 + MLT1C LTR MaLR 59 194 -273 5 1346 21 0 0 0 chr6 99786374 99786395 -49730642 + AT_rich Low_complexity Low_complexity 1 21 0 5 1346 207 0 0 0 chr6 99786395 99786418 -49730619 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1346 486 266 82 36 chr6 99786443 99786638 -49730399 + B3 SINE B2 3 206 -10 5 1346 286 324 133 0 chr6 99787046 99787151 -49729886 + MLT1C LTR MaLR 256 374 0 5 1346 261 394 37 16 chr6 99787309 99787500 -49729537 - MLT2F LTR ERVL -9 654 460 5 1346 1292 197 148 48 chr6 99787773 99787928 -49729109 + ORR1D1 LTR MaLR 9 163 -211 5 1346 567 0 0 0 chr6 99787928 99787991 -49729046 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 1346 231 36 0 0 chr6 99787991 99788018 -49729019 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1346 1292 197 148 48 chr6 99788018 99788126 -49728911 + ORR1D1 LTR MaLR 164 297 -77 5 1346 1165 58 0 0 chr6 99788126 99788264 -49728773 - B1_Mus1 SINE Alu -9 139 2 5 1346 1292 197 148 48 chr6 99788264 99788329 -49728708 + ORR1D1 LTR MaLR 298 370 -4 5 1346 252 0 0 0 chr6 99788336 99788364 -49728673 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1346 35 0 0 0 chr6 99789051 99789086 -49727951 + AT_rich Low_complexity Low_complexity 1 35 0 5 1346 1218 70 128 0 chr6 99789149 99789321 -49727716 + B2_Mm2 SINE B2 2 195 0 5 1346 1351 81 0 0 chr6 99789468 99789640 -49727397 - ORR1A3 LTR MaLR 0 326 155 5 1346 1275 117 26 26 chr6 99790320 99790537 -49726500 - ORR1A2 LTR MaLR -153 225 3 5 1346 290 320 0 20 chr6 99791636 99791735 -49725302 + GA-rich Low_complexity Low_complexity 5 101 0 5 1346 218 343 47 60 chr6 99792974 99793123 -49723914 + MIRb SINE MIR 106 252 -16 5 1346 1016 127 23 41 chr6 99794069 99794241 -49722796 - URR1A DNA MER1_type 0 226 58 5 1346 287 260 13 25 chr6 99794699 99794778 -49722259 + GA-rich Low_complexity Low_complexity 4 81 0 5 1346 1666 168 34 48 chr6 99794904 99795118 -49721919 + RMER17C LTR ERVK 3 224 -186 5 1346 849 54 0 0 chr6 99795118 99795229 -49721808 + (TC)n Simple_repeat Simple_repeat 1 111 0 5 1346 1666 168 34 48 chr6 99795229 99795428 -49721609 + RMER17C LTR ERVK 225 409 -1 5 1346 1028 288 24 7 chr6 99796005 99796292 -49720745 - B4A SINE B4 0 292 1 5 1346 357 218 13 0 chr6 99796797 99796875 -49720162 + MER34A LTR ERV1 24 102 -469 5 1346 1074 254 139 26 chr6 99796875 99797292 -49719745 + L1M4 LINE L1 4720 5183 -963 5 1346 1088 186 14 23 chr6 99797292 99797507 -49719530 + MTD LTR MaLR 1 213 -206 5 1346 298 179 18 0 chr6 99797507 99797563 -49719474 + MTD LTR MaLR 363 419 0 5 1346 290 214 14 14 chr6 99797565 99797636 -49719401 + L1M4 LINE L1 5188 5258 -888 5 1346 358 297 51 13 chr6 99797695 99797852 -49719185 + L1M4 LINE L1 5349 5511 -673 5 1346 781 184 126 40 chr6 99797896 99798061 -49718976 + B3 SINE B2 2 183 -33 5 1346 1125 128 0 0 chr6 99798061 99798241 -49718796 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1346 781 184 126 40 chr6 99798241 99798273 -49718764 + B3 SINE B2 184 216 0 5 1346 532 103 26 0 chr6 99798395 99798473 -49718564 - URR1B DNA MER1_type -1 224 145 5 1346 849 59 0 8 chr6 99798473 99798593 -49718444 - L1_Mus1 LINE L1 0 6567 6449 5 1346 2794 49 0 0 chr6 99798593 99798918 -49718119 + L1_Mus1 LINE L1 6108 6432 -135 5 1346 876 200 7 0 chr6 99798918 99799073 -49717964 - URR1B DNA MER1_type -69 156 1 5 1346 269 370 0 8 chr6 99799555 99799675 -49717362 + GA-rich Low_complexity Low_complexity 3 121 0 5 1346 756 171 170 5 chr6 99799735 99799929 -49717108 + URR1A DNA MER1_type 1 226 0 5 1346 1233 88 0 0 chr6 99801045 99801445 -49715592 + (CA)n Simple_repeat Simple_repeat 1 400 0 5 1346 252 220 21 104 chr6 99802248 99802358 -49714679 + B4 SINE B4 6 211 -81 5 1346 683 298 6 0 chr6 99802358 99802436 -49714601 + ID SINE ID 3 81 -143 5 1346 417 252 42 59 chr6 99802436 99802554 -49714483 + PB1D10 SINE Alu 1 116 -1 5 1346 620 235 37 161 chr6 99802598 99802637 -49714400 - B3 SINE B2 0 216 178 6 1346 180 0 0 0 chr6 99802637 99802657 -49714380 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1346 207 0 0 0 chr6 99802661 99802684 -49714353 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1346 620 235 37 161 chr6 99802684 99802882 -49714155 - B3 SINE B2 -39 177 4 6 1346 234 256 12 25 chr6 99802938 99803018 -49714019 + (CATA)n Simple_repeat Simple_repeat 2 80 0 6 1346 24 53 0 0 chr6 99803362 99803400 -49713637 + AT_rich Low_complexity Low_complexity 1 38 0 6 1346 226 254 123 66 chr6 99803626 99803748 -49713289 - MLT1L LTR MaLR -2 608 480 6 1346 751 209 9 129 chr6 99804137 99804362 -49712675 - B3A SINE B2 0 198 1 6 1346 335 328 39 18 chr6 99804392 99804611 -49712426 - MIRb SINE MIR -1 267 43 6 1346 720 188 46 13 chr6 99804631 99804782 -49712255 - B3 SINE B2 -37 179 24 6 1346 2842 19 3 0 chr6 99804782 99805103 -49711934 - RLTRETN_Mm LTR ERVK 0 322 1 6 1346 4764 11 6 2 chr6 99805103 99805636 -49711401 - MMETn-int LTR ERVK 0 4844 4310 6 1346 216 0 0 0 chr6 99805793 99805817 -49711220 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1346 687 278 106 88 chr6 99805949 99806288 -49710749 + ORR1E LTR MaLR 4 348 -11 6 1346 195 42 0 0 chr6 99806515 99806539 -49710498 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1346 180 188 0 0 chr6 99806920 99806952 -49710085 - MIR SINE MIR -60 148 117 6 1346 373 309 89 51 chr6 99808080 99808237 -49708800 + RSINE1 SINE B4 3 165 0 6 1346 344 239 36 18 chr6 99808238 99808349 -49708688 + (CA)n Simple_repeat Simple_repeat 2 114 0 6 1346 361 141 52 63 chr6 99808353 99808527 -49708510 + (CATATA)n Simple_repeat Simple_repeat 4 175 0 6 1346 229 202 47 35 chr6 99808507 99808676 -49708361 + (CATA)n Simple_repeat Simple_repeat 4 174 0 6 1346 207 221 43 14 chr6 99808678 99808747 -49708290 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1346 187 218 19 29 chr6 99808781 99808885 -49708152 + (CATA)n Simple_repeat Simple_repeat 4 106 0 6 1346 268 171 20 54 chr6 99808921 99809069 -49707968 + (CATA)n Simple_repeat Simple_repeat 4 146 0 6 1346 238 168 34 34 chr6 99809046 99809163 -49707874 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1346 248 348 92 0 chr6 99809213 99809354 -49707683 + MIR SINE MIR 55 208 -54 6 1346 375 23 0 0 chr6 99810482 99810526 -49706511 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1346 667 260 23 6 chr6 99810556 99810730 -49706307 - MER5B DNA MER1_type -1 177 1 6 1346 315 314 119 28 chr6 99810898 99811075 -49705962 + HAL1-3A_ME LINE L1 2284 2476 -382 6 1346 191 36 36 0 chr6 99811317 99811345 -49705692 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 6 1346 225 317 86 38 chr6 99811805 99811910 -49705127 - MIRb SINE MIR -68 200 91 6 1346 1555 238 88 13 chr6 99811993 99812381 -49704656 - MTD LTR MaLR 0 419 3 6 1346 232 339 40 104 chr6 99812463 99812588 -49704449 - PB1D10 SINE Alu 0 117 1 6 1346 716 246 61 28 chr6 99812588 99812663 -49704374 - ID SINE ID -143 81 1 6 1346 227 208 42 0 chr6 99813104 99813152 -49703885 + RMER30 DNA MER1_type 2 51 -151 6 1346 498 198 28 9 chr6 99813903 99814010 -49703027 - PB1D10 SINE Alu -8 109 1 6 1346 678 262 71 63 chr6 99814059 99814328 -49702709 + B4 SINE B4 4 274 -18 6 1346 406 222 45 27 chr6 99814510 99814621 -49702416 - B1F SINE Alu -36 113 1 6 1346 257 316 101 17 chr6 99814516 99814635 -49702402 - B4 SINE B4 -95 197 69 6 1346 424 272 18 0 chr6 99815572 99815686 -49701351 + PB1D10 SINE Alu 1 116 -1 6 1346 238 394 21 11 chr6 99816005 99816100 -49700937 + MER5A DNA MER1_type 64 159 -30 6 1346 237 299 33 33 chr6 99816322 99816412 -49700625 + MIR SINE MIR 159 248 -20 6 1346 2494 112 54 32 chr6 99816686 99817135 -49699902 + MTB_Mm-int LTR MaLR 662 1537 -426 6 1346 1251 58 0 0 chr6 99817135 99817291 -49699746 + MTB_Mm LTR MaLR 1 156 -251 6 1346 323 169 92 0 chr6 99817279 99817344 -49699693 - URR1A DNA MER1_type -155 71 1 6 1346 221 246 32 16 chr6 99817571 99817633 -49699404 + B4A SINE B4 1 63 -229 6 1346 468 51 0 0 chr6 99817635 99817694 -49699343 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1346 830 251 191 26 chr6 99818467 99818770 -49698267 + ORR1E LTR MaLR 2 354 -5 6 1346 656 260 22 39 chr6 99818961 99819141 -49697896 + ORR1E LTR MaLR 1 177 -182 6 1346 856 271 13 13 chr6 99819623 99819847 -49697190 - B4 SINE B4 -18 274 51 6 1346 443 333 126 76 chr6 99820069 99820449 -49696588 + MLT1J LTR MaLR 1 399 -113 6 1346 2618 41 0 249 chr6 99820528 99821045 -49695992 + RLTR10 LTR ERVK 1 388 -2 6 1346 17345 25 3 1 chr6 99821047 99822999 -49694038 + RLTR10-int LTR ERVK 1 1986 -1 6 1346 2637 41 0 249 chr6 99822999 99823518 -49693519 + RLTR10 LTR ERVK 1 390 0 6 1346 1214 238 53 96 chr6 99824006 99824401 -49692636 - MTE2a LTR MaLR -1 378 1 6 1346 1964 191 58 2 chr6 99824428 99824826 -49692211 + MTC LTR MaLR 2 421 0 6 1346 296 245 115 26 chr6 99824935 99825048 -49691989 + MLT1C LTR MaLR 11 133 -334 6 1346 260 323 135 0 chr6 99825432 99825528 -49691509 - RMER15 LTR ERVL -15 560 452 6 1346 323 299 10 10 chr6 99825650 99825748 -49691289 - RMER30 DNA MER1_type -1 201 104 6 1346 662 324 50 9 chr6 99826032 99826250 -49690787 + MER2 DNA MER2_type 84 310 -35 6 1346 684 217 34 27 chr6 99826852 99826999 -49690038 + B1_Mur3 SINE Alu 1 148 -1 6 1346 1453 215 20 55 chr6 99827028 99827426 -49689611 + ORR1C2 LTR MaLR 1 384 0 6 1346 226 224 0 20 chr6 99827478 99827528 -49689509 + MLT1C LTR MaLR 52 100 -367 6 1346 1166 261 0 32 chr6 99828779 99829064 -49687973 + B4 SINE B4 1 276 -16 6 1346 233 341 12 0 chr6 99829491 99829576 -49687461 + MER89 LTR ERV1 252 337 -222 6 1346 732 236 7 0 chr6 99830442 99830586 -49686451 + B1_Mus2 SINE Alu 2 146 -1 6 1346 1407 263 41 51 chr6 99830617 99831129 -49685908 + Lx9 LINE L1 6989 7495 -149 6 1346 413 314 62 36 chr6 99831256 99831448 -49685589 + B4A SINE B4 2 198 -94 6 1346 795 181 0 0 chr6 99832921 99833523 -49683514 + (CA)n Simple_repeat Simple_repeat 1 602 0 6 1346 415 313 73 81 chr6 99833609 99833967 -49683070 + ORR1E LTR MaLR 1 355 -4 6 1346 199 347 16 48 chr6 99834163 99834287 -49682750 - L2b LINE L2 -243 3132 3013 6 1346 550 274 167 39 chr6 99835593 99835852 -49681185 + ID_B1 SINE B4 7 286 -6 6 1346 254 284 30 0 chr6 99836131 99836198 -49680839 + MTEb LTR MaLR 297 365 -14 6 1346 211 317 114 24 chr6 99836276 99836399 -49680638 + MIRc SINE MIR 3 136 -132 6 1346 216 220 85 6 chr6 99836405 99836468 -49680569 - MIRc SINE MIR -86 190 115 6 1346 664 310 6 6 chr6 99836586 99836758 -49680279 + B3A SINE B2 26 197 -1 6 1346 229 271 28 28 chr6 99836948 99837020 -49680017 - LTR33 LTR ERVL -368 147 76 6 1346 426 256 8 25 chr6 99837158 99837278 -49679759 - MLT1A1 LTR MaLR 0 408 291 6 1346 295 333 37 22 chr6 99837491 99837626 -49679411 - ORR1E LTR MaLR -222 137 1 6 1346 712 249 15 24 chr6 99838987 99839193 -49677844 - Lx6 LINE L1 -20 7440 7237 6 1346 416 323 31 0 chr6 99839998 99840125 -49676912 - RSINE1 SINE B4 -22 143 13 6 1346 1091 199 239 43 chr6 99840412 99840759 -49676278 + MTD LTR MaLR 3 417 -2 6 1346 271 263 25 52 chr6 99840896 99840994 -49676043 + MIRb SINE MIR 112 219 -43 6 1346 375 336 94 114 chr6 99841000 99841072 -49675965 - MLT1F LTR MaLR -4 575 506 6 1346 2024 145 124 36 chr6 99841072 99841459 -49675578 + MTC LTR MaLR 1 421 0 6 1346 440 327 79 55 chr6 99841459 99841738 -49675299 - MLT1F LTR MaLR -74 505 183 6 1346 225 319 43 14 chr6 99841722 99841792 -49675245 + RLTR27 LTR ERVK 114 185 -124 6 1346 226 307 63 74 chr6 99841751 99841846 -49675191 - MLT1F LTR MaLR -382 197 104 6 1346 284 313 57 59 chr6 99842603 99842822 -49674215 - MTEa LTR MaLR -6 373 114 6 1346 188 135 27 0 chr6 99842985 99843022 -49674015 + CT-rich Low_complexity Low_complexity 2 39 0 6 1346 243 176 407 12 chr6 99843117 99843203 -49673834 - MTEa LTR MaLR -234 125 6 6 1346 952 216 23 99 chr6 99843259 99843521 -49673516 - 7SK RNA RNA -62 269 28 6 1346 813 138 0 44 chr6 99843529 99843653 -49673384 + B1_Mus1 SINE Alu 13 136 -12 6 1346 396 0 0 0 chr6 99843653 99843697 -49673340 + (CTAA)n Simple_repeat Simple_repeat 3 46 0 6 1346 813 138 0 44 chr6 99843697 99843708 -49673329 + B1_Mus1 SINE Alu 137 142 -6 6 1346 221 75 0 24 chr6 99843816 99843857 -49673180 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1346 241 388 16 0 chr6 99843863 99843992 -49673045 + G-rich Low_complexity Low_complexity 5 135 0 6 1346 408 71 0 0 chr6 99845184 99845240 -49671797 + (TTCA)n Simple_repeat Simple_repeat 4 59 0 6 1346 237 271 14 0 chr6 99845372 99845442 -49671595 + G-rich Low_complexity Low_complexity 3 73 0 6 1346 2086 154 6 36 chr6 99845450 99845807 -49671230 - ORR1B1 LTR MaLR -8 386 41 6 1346 384 230 85 159 chr6 99845915 99846210 -49670827 + RMER17C-int LTR ERVK 2607 2879 -359 6 1346 784 270 142 84 chr6 99846533 99846949 -49670088 + RLTR28B LTR ERVL 1 440 -41 6 1346 301 150 85 24 chr6 99847220 99847302 -49669735 + MIRb SINE MIR 121 207 -61 6 1346 2346 120 3 0 chr6 99848584 99848910 -49668127 + ORR1A2 LTR MaLR 1 327 0 6 1346 600 139 190 0 chr6 99849176 99849204 -49667833 - MT2A LTR ERVL -16 517 490 6 1346 345 100 0 0 chr6 99849204 99849254 -49667783 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 6 1346 1096 216 70 15 chr6 99849254 99849601 -49667436 - MT2A LTR ERVL -44 540 5 6 1346 204 244 22 0 chr6 99850155 99850200 -49666837 + CT-rich Low_complexity Low_complexity 2 47 0 6 1346 248 306 40 20 chr6 99850629 99850729 -49666308 + MER20B DNA MER1_type 34 135 -648 6 1346 329 250 75 54 chr6 99850784 99850877 -49666160 - B4A SINE B4 -1 291 197 6 1346 444 250 69 44 chr6 99851376 99851535 -49665502 + B4A SINE B4 11 173 -119 6 1346 318 324 18 18 chr6 99851697 99851810 -49665227 + MLT1F1 LTR MaLR 193 305 -264 6 1346 243 257 14 41 chr6 99852107 99852180 -49664857 + MTEa LTR MaLR 280 350 -29 7 1346 225 0 0 0 chr6 99852332 99852357 -49664680 + (TCTCC)n Simple_repeat Simple_repeat 5 29 0 7 1346 526 254 49 0 chr6 99852464 99852586 -49664451 - B1F SINE Alu 0 149 22 7 1346 366 308 31 25 chr6 99852796 99852959 -49664078 + MER20B DNA MER1_type 601 764 -19 6 1346 183 100 0 0 chr6 99854079 99854109 -49662928 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 7 1346 963 0 0 0 chr6 99854297 99854404 -49662633 + (TTTCC)n Simple_repeat Simple_repeat 4 110 0 7 1346 351 0 0 0 chr6 99854405 99854444 -49662593 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 1346 1157 175 69 28 chr6 99855752 99855843 -49661194 + URR1A DNA MER1_type 1 105 -121 7 1346 3495 25 5 0 chr6 99855843 99856237 -49660800 - MTA_Mm LTR MaLR 0 396 1 7 1346 1157 175 69 28 chr6 99856237 99856362 -49660675 + URR1A DNA MER1_type 106 226 0 7 1346 324 268 24 0 chr6 99856362 99856441 -49660596 - MER5A1 DNA MER1_type -65 101 21 7 1346 450 303 135 63 chr6 99856447 99856669 -49660368 + Arthur1C DNA Tip100 114 351 -12 7 1346 204 352 118 43 chr6 99856867 99857146 -49659891 - L2a LINE L2 -24 3402 3103 7 1346 292 271 0 0 chr6 99857386 99857456 -49659581 + (TG)n Simple_repeat Simple_repeat 2 71 0 7 1346 373 335 53 98 chr6 99858401 99858666 -49658371 + MER34A LTR ERV1 319 571 0 7 1346 609 52 0 0 chr6 99858911 99858988 -49658049 + (TC)n Simple_repeat Simple_repeat 1 77 0 7 1346 252 0 0 0 chr6 99858988 99859015 -49658022 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1346 255 93 0 0 chr6 99859015 99859058 -49657979 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 1346 898 223 144 23 chr6 99859121 99859378 -49657659 - B4A SINE B4 0 292 5 7 1346 440 323 192 0 chr6 99859855 99860084 -49656953 + MLT1H1 LTR MaLR 65 337 -218 7 1346 362 324 30 46 chr6 99861181 99861378 -49655659 + LTR33 LTR ERVL 1 194 -321 7 1346 373 279 90 20 chr6 99861407 99861608 -49655429 + LTR33 LTR ERVL 295 509 -6 7 1346 217 229 0 0 chr6 99861816 99861864 -49655173 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1346 552 30 0 0 chr6 99861997 99862063 -49654974 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 7 1346 466 259 21 35 chr6 99862073 99862217 -49654820 - Ricksha_c DNA MuDR -1188 860 719 7 1346 750 249 266 14 chr6 99862251 99862597 -49654440 - MLT2B5 LTR ERVL -281 436 4 7 1346 181 333 138 8 chr6 99862601 99862731 -49654306 + MIRc SINE MIR 11 157 -111 7 1346 336 111 0 0 chr6 99863603 99863666 -49653371 + (TC)n Simple_repeat Simple_repeat 2 64 0 7 1346 462 278 95 27 chr6 99863701 99863849 -49653188 - RSINE1 SINE B4 -6 159 2 7 1346 695 270 62 13 chr6 99863900 99864259 -49652778 - L1MB2 LINE L1 -91 6077 5686 7 1346 582 172 52 0 chr6 99864805 99864921 -49652116 + ORR1D1 LTR MaLR 252 373 -1 7 1346 392 311 112 21 chr6 99865174 99865361 -49651676 + MLT1F LTR MaLR 318 521 -27 7 1346 512 192 19 9 chr6 99865371 99865476 -49651561 + ORR1C2 LTR MaLR 1 106 -272 7 1346 248 118 0 0 chr6 99865498 99865532 -49651505 + (CCCCCT)n Simple_repeat Simple_repeat 4 37 0 7 1346 1055 134 6 0 chr6 99865532 99865711 -49651326 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1346 1025 208 14 19 chr6 99865738 99865949 -49651088 + ORR1C2 LTR MaLR 175 384 0 7 1346 463 259 21 37 chr6 99866066 99866290 -49650747 - MTEb LTR MaLR -118 261 1 7 1346 355 349 0 36 chr6 99866512 99866649 -49650388 + MIR SINE MIR 112 243 -19 7 1346 430 313 107 13 chr6 99866735 99866884 -49650153 + Tigger15a DNA TcMar 29 191 -524 7 1346 218 305 0 0 chr6 99866892 99866951 -49650086 - MIRm SINE MIR -8 268 210 7 1346 479 274 16 49 chr6 99867181 99867304 -49649733 + Tigger15a DNA TcMar 211 329 -386 7 1346 296 297 167 18 chr6 99867353 99867521 -49649516 + MIR SINE MIR 17 209 -59 7 1346 1004 280 33 33 chr6 99867522 99867702 -49649335 + B4 SINE B4 2 175 -117 7 1346 2632 68 12 0 chr6 99867702 99868025 -49649012 + ORR1A2 LTR MaLR 1 327 0 7 1346 1004 280 33 33 chr6 99868025 99868117 -49648920 + B4 SINE B4 176 274 -18 7 1346 340 330 81 35 chr6 99868230 99868428 -49648609 - MLT1I LTR MaLR 0 411 205 7 1346 26 30 0 0 chr6 99869259 99869292 -49647745 + AT_rich Low_complexity Low_complexity 1 33 0 7 1346 854 305 26 38 chr6 99869810 99870076 -49646961 - B4 SINE B4 0 292 30 7 1346 364 279 29 9 chr6 99870364 99870469 -49646568 + LTR16D LTR ERVL 545 651 0 7 1346 490 129 108 0 chr6 99871243 99871336 -49645701 - RMER4A LTR ERVK 0 466 364 7 1346 2426 69 6 6 chr6 99871336 99871655 -49645382 + ORR1A2 LTR MaLR 1 319 -8 7 1346 2117 127 38 14 chr6 99871653 99872019 -49645018 - RMER4A LTR ERVK -91 375 1 7 1346 438 94 0 0 chr6 99872527 99872591 -49644446 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1346 636 318 49 80 chr6 99872680 99873005 -49644032 - ORR1E LTR MaLR -44 315 1 7 1346 622 321 184 12 chr6 99873566 99873989 -49643048 + MLT1D LTR MaLR 1 496 -9 7 1346 308 347 85 8 chr6 99874002 99874202 -49642835 - MIR SINE MIR -39 229 14 7 1346 451 278 37 0 chr6 99875828 99875936 -49641101 - MIR SINE MIR -123 139 28 7 1346 267 62 146 0 chr6 99876057 99876105 -49640932 + B1_Mur4 SINE Alu 96 150 0 7 1346 4202 72 59 2 chr6 99876220 99876778 -49640259 - L1_Mus2 LINE L1 -1 6565 5976 7 1347 396 274 61 31 chr6 99876970 99877046 -49639991 + PB1D10 SINE Alu 6 80 -37 7 1347 528 16 0 0 chr6 99877046 99877107 -49639930 + (GAAA)n Simple_repeat Simple_repeat 1 61 0 7 1347 396 274 61 31 chr6 99877107 99877128 -49639909 + PB1D10 SINE Alu 81 106 -11 7 1347 610 234 53 71 chr6 99877796 99877966 -49639071 - ID_B1 SINE B4 -55 169 3 7 1347 315 221 38 25 chr6 99878744 99878823 -49638214 + ID4 SINE ID 3 82 -1 7 1347 366 247 75 0 chr6 99879212 99879305 -49637732 + L1MC4 LINE L1 7755 7854 -188 7 1347 220 95 70 23 chr6 99879542 99879628 -49637409 + (TA)n Simple_repeat Simple_repeat 2 91 0 7 1347 2060 132 3 10 chr6 99880606 99880919 -49636118 + RLTR10E LTR ERVK 1 311 0 7 1347 298 111 27 27 chr6 99880938 99881012 -49636025 + (CAGAGA)n Simple_repeat Simple_repeat 3 76 0 7 1347 218 340 84 11 chr6 99881045 99881140 -49635897 + MIRm SINE MIR 52 153 -123 7 1347 470 330 14 65 chr6 99881340 99881554 -49635483 + MLT1F LTR MaLR 302 504 -65 7 1347 408 82 0 0 chr6 99882005 99882066 -49634971 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1347 622 319 14 14 chr6 99882713 99882920 -49634117 + ID_B1 SINE B4 2 208 -16 7 1347 1236 191 9 0 chr6 99883220 99883440 -49633597 - URR1B DNA MER1_type -1 224 3 7 1347 256 333 33 33 chr6 99884459 99884580 -49632457 + LTR16E1 LTR ERVL 418 538 0 7 1347 4270 79 48 2 chr6 99885039 99885597 -49631440 + MT2B2 LTR ERVL 1 584 0 7 1347 4719 12 0 0 chr6 99885788 99886307 -49630730 + L1Md_A LINE L1 6064 6582 0 7 1347 243 88 0 0 chr6 99886326 99886360 -49630677 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 7 1347 483 299 69 11 chr6 99886819 99887008 -49630029 + L1MCa LINE L1 6 205 -6303 7 1347 397 14 0 67 chr6 99887354 99887429 -49629608 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 7 1347 239 329 0 0 chr6 99887605 99887675 -49629362 - MLT1A0 LTR MaLR 0 365 296 7 1347 390 265 19 29 chr6 99887676 99887781 -49629256 + PB1D10 SINE Alu 2 105 -12 7 1347 231 272 56 93 chr6 99888526 99888688 -49628349 - RMER21A LTR ERV1 -97 850 695 7 1347 740 242 0 121 chr6 99888715 99888955 -49628082 - MER20 DNA MER1_type 0 219 9 7 1347 447 68 0 0 chr6 99889901 99889960 -49627077 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1347 410 200 54 22 chr6 99890702 99890794 -49626243 - LTR28 LTR ERV1 -813 207 113 7 1347 261 330 36 0 chr6 99891364 99891476 -49625561 + Charlie8 DNA MER1_type 93 208 -2220 7 1347 2325 85 3 3 chr6 99891649 99891968 -49625069 + ORR1A2 LTR MaLR 1 319 -8 7 1347 506 330 111 68 chr6 99892011 99892177 -49624860 + MLT1C LTR MaLR 1 184 -283 7 1347 407 263 20 10 chr6 99892177 99892277 -49624760 + PB1D10 SINE Alu 2 102 -15 7 1347 506 330 111 68 chr6 99892277 99892552 -49624485 + MLT1C LTR MaLR 185 461 -6 7 1347 251 333 53 0 chr6 99892782 99892857 -49624180 + ID4_ SINE ID 2 80 -3 7 1347 2265 162 64 27 chr6 99893028 99893057 -49623980 + MTC LTR MaLR 1 26 -395 7 1347 315 0 0 0 chr6 99893057 99893092 -49623945 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1347 2265 162 64 27 chr6 99893092 99893468 -49623569 + MTC LTR MaLR 27 421 0 7 1347 690 264 22 11 chr6 99893652 99893832 -49623205 - B3A SINE B2 -16 182 1 7 1347 232 340 0 30 chr6 99894281 99894381 -49622656 + MLT1L LTR MaLR 345 441 -169 7 1347 1024 290 7 67 chr6 99894742 99895041 -49621996 + B4A SINE B4 8 288 -4 7 1347 206 233 164 62 chr6 99895276 99895404 -49621633 - MIR3 SINE MIR -38 170 30 7 1347 830 268 80 53 chr6 99895499 99895610 -49621427 - B4 SINE B4 -18 274 166 7 1347 1887 161 95 33 chr6 99895610 99895977 -49621060 - ORR1B1 LTR MaLR 0 394 5 7 1347 830 268 80 53 chr6 99895977 99896129 -49620908 - B4 SINE B4 -127 165 5 7 1347 735 217 72 72 chr6 99897307 99897530 -49619507 + ID_B1 SINE B4 2 224 0 7 1347 500 295 119 34 chr6 99897578 99897989 -49619048 - L1ME2 LINE L1 -93 6071 5626 7 1347 1448 148 225 62 chr6 99898178 99898503 -49618534 - ORR1C1 LTR MaLR 0 378 1 7 1347 236 321 28 28 chr6 99898506 99898615 -49618422 + LTR33A_ LTR ERVL 39 147 -384 7 1347 321 324 122 39 chr6 99898699 99898879 -49618158 + LTR33A_ LTR ERVL 125 319 -212 7 1347 287 192 13 0 chr6 99899399 99899477 -49617560 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1347 204 258 16 0 chr6 99899502 99899543 -49617494 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1347 2070 99 20 61 chr6 99899543 99899886 -49617151 + ORR1A4 LTR MaLR 1 329 0 7 1347 204 258 16 0 chr6 99899886 99899906 -49617131 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1347 214 270 121 22 chr6 99900571 99900662 -49616375 + MER5A DNA MER1_type 30 129 -60 7 1347 186 324 66 38 chr6 99900589 99900695 -49616342 - MER5A DNA MER1_type -44 145 37 7 1347 715 210 59 161 chr6 99900707 99901069 -49615968 - RLTRETN_Mm LTR ERVK 0 409 1 7 1347 1773 138 86 7 chr6 99901079 99901371 -49615666 + Lx5 LINE L1 6736 7050 0 8 1347 2995 126 3 140 chr6 99901450 99902057 -49614980 + RLTR28 LTR ERVL 1 524 0 8 1347 448 345 55 11 chr6 99902363 99902545 -49614492 - MER91B DNA Tip100 0 190 1 8 1347 1214 256 80 45 chr6 99902831 99903183 -49613854 - ORR1D2 LTR MaLR -2 368 5 8 1347 1334 156 32 5 chr6 99903259 99903478 -49613559 + URR1A DNA MER1_type 2 226 0 8 1347 405 0 0 0 chr6 99903481 99903526 -49613511 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1347 351 318 0 42 chr6 99903543 99903651 -49613386 - B4A SINE B4 -65 227 128 8 1347 279 160 0 0 chr6 99903651 99903726 -49613311 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 1347 249 218 36 0 chr6 99903801 99903856 -49613181 + CT-rich Low_complexity Low_complexity 4 60 0 8 1347 850 278 32 9 chr6 99903858 99904076 -49612961 - B4A SINE B4 -60 232 10 8 1347 251 230 24 129 chr6 99904003 99904088 -49612949 - B3A SINE B2 -116 82 7 8 1347 473 274 11 4 chr6 99906335 99906454 -49610583 + B4 SINE B4 20 137 -87 8 1347 1438 216 88 52 chr6 99906454 99906854 -49610183 + MTD LTR MaLR 6 419 0 8 1347 396 204 159 0 chr6 99906854 99906930 -49610107 + B4 SINE B4 129 218 -74 8 1347 322 51 0 63 chr6 99906960 99907023 -49610014 + (TCTCTG)n Simple_repeat Simple_repeat 4 62 0 8 1347 261 0 0 0 chr6 99907026 99907055 -49609982 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1347 243 0 0 0 chr6 99907160 99907187 -49609850 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 8 1347 185 128 0 21 chr6 99907197 99907245 -49609792 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 8 1347 1935 222 38 13 chr6 99907249 99907646 -49609391 + MTD LTR MaLR 13 419 0 8 1347 266 238 10 25 chr6 99907966 99908050 -49608987 + PB1 SINE Alu 17 97 -52 8 1347 260 250 0 0 chr6 99908178 99908226 -49608811 + PB1 SINE Alu 78 125 -2 8 1347 641 210 0 25 chr6 99908233 99908355 -49608682 + RSINE1 SINE B4 11 129 -36 8 1347 355 269 13 0 chr6 99908415 99908493 -49608544 + ID4_ SINE ID 2 80 -3 8 1347 518 158 171 73 chr6 99909020 99909143 -49607894 - MER20 DNA MER1_type -81 138 4 8 1347 194 0 39 0 chr6 99909212 99909238 -49607799 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1347 185 308 39 0 chr6 99909784 99909862 -49607175 + MIRc SINE MIR 160 240 -28 8 1347 273 244 157 22 chr6 99909950 99910084 -49606953 + MIR SINE MIR 8 159 -103 8 1347 250 263 76 38 chr6 99910631 99910710 -49606327 - ID4_ SINE ID 0 83 2 8 1347 230 315 83 0 chr6 99910840 99910948 -49606089 - LTR16D2 LTR ERVL -2 570 454 8 1347 365 291 15 22 chr6 99911298 99911435 -49605602 + MamRep564 Unknown Unknown 123 258 -99 8 1347 1153 91 11 6 chr6 99911516 99911693 -49605344 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 8 1347 257 287 86 53 chr6 99911822 99911973 -49605064 + MIRb SINE MIR 43 198 -70 8 1347 189 0 0 0 chr6 99911996 99912017 -49605020 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1347 341 241 41 49 chr6 99912255 99912377 -49604660 - RLTR28B LTR ERVL -14 510 390 8 1347 212 86 29 0 chr6 99912430 99912465 -49604572 + (TTG)n Simple_repeat Simple_repeat 1 36 0 8 1347 360 0 0 0 chr6 99912505 99912545 -49604492 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1347 880 204 18 6 chr6 99912603 99912771 -49604266 - RLTR28B LTR ERVL -295 186 17 8 1347 250 167 46 0 chr6 99912806 99912914 -49604123 + GA-rich Low_complexity Low_complexity 1 113 0 8 1347 3490 33 2 0 chr6 99912999 99913394 -49603643 - MTA_Mm LTR MaLR 0 396 1 8 1347 527 222 52 14 chr6 99913501 99913635 -49603402 - B1F SINE Alu -12 137 3 8 1347 387 301 31 111 chr6 99913855 99914114 -49602923 + B4A SINE B4 2 257 -35 8 1347 408 20 0 0 chr6 99914114 99914163 -49602874 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1347 185 271 42 0 chr6 99915106 99915154 -49601883 + L3b LINE CR1 268 317 -165 8 1347 375 244 164 22 chr6 99915177 99915311 -49601726 + MLT1E2 LTR MaLR 475 627 0 8 1347 252 0 0 0 chr6 99915427 99915455 -49601582 + (CTGGGG)n Simple_repeat Simple_repeat 5 32 0 8 1347 863 190 35 23 chr6 99915495 99915667 -49601370 - MTE2b LTR MaLR 0 379 206 8 1347 385 305 67 8 chr6 99915743 99915862 -49601175 + Tigger7 DNA MER2_type 10 135 -2356 8 1347 1808 203 125 10 chr6 99915880 99916199 -49600838 + RMER6D LTR ERVK 5 355 -365 8 1347 514 115 35 0 chr6 99916199 99916312 -49600725 + (CAGTT)n Simple_repeat Simple_repeat 5 121 0 8 1347 1808 167 41 76 chr6 99916312 99916534 -49600503 + RMER6D LTR ERVK 356 690 0 8 1347 245 151 19 0 chr6 99916562 99916615 -49600422 + (CAGTA)n Simple_repeat Simple_repeat 3 56 0 8 1347 836 256 81 4 chr6 99916731 99916966 -49600071 + Tigger7 DNA MER2_type 2238 2490 -1 8 1347 196 315 123 0 chr6 99916968 99917041 -49599996 + MIR SINE MIR 154 235 -27 8 1347 185 256 56 79 chr6 99917603 99917692 -49599345 - L4 LINE RTE -160 1869 1783 8 1347 1291 34 0 0 chr6 99918099 99918246 -49598791 - B1_Mus2 SINE Alu 0 147 1 8 1347 412 301 0 34 chr6 99918289 99918626 -49598411 + CT-rich Low_complexity Low_complexity 1 325 0 8 1347 180 0 0 0 chr6 99918794 99918814 -49598223 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 8 1347 181 219 27 0 chr6 99919531 99919604 -49597433 + CT-rich Low_complexity Low_complexity 1 75 0 8 1347 331 173 21 99 chr6 99919709 99919901 -49597136 + (TATG)n Simple_repeat Simple_repeat 3 179 0 8 1347 274 109 17 76 chr6 99919957 99920076 -49596961 + (TATG)n Simple_repeat Simple_repeat 3 114 0 8 1347 245 163 10 89 chr6 99920088 99920189 -49596848 + (TATG)n Simple_repeat Simple_repeat 3 95 0 8 1347 287 290 173 58 chr6 99920209 99920469 -49596568 + Lx8 LINE L1 7168 7457 -16 8 1347 282 314 30 59 chr6 99920479 99920703 -49596334 + RSINE1 SINE B4 2 218 -74 8 1347 270 0 0 0 chr6 99920719 99920749 -49596288 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 8 1347 1910 188 48 87 chr6 99920825 99921263 -49595774 + MTC LTR MaLR 1 421 0 8 1347 608 304 32 16 chr6 99922099 99922286 -49594751 + RMER30 DNA MER1_type 5 194 -8 8 1347 494 313 33 26 chr6 99922868 99923019 -49594018 - MER2 DNA MER2_type -40 305 154 8 1347 342 115 0 0 chr6 99923080 99923132 -49593905 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1347 1072 281 8 26 chr6 99923134 99923401 -49593636 - B4 SINE B4 -23 269 8 8 1347 596 348 198 24 chr6 99924038 99924449 -49592588 - LTR16C LTR ERVL 0 489 8 8 1347 245 128 0 21 chr6 99924967 99925015 -49592022 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 1347 254 378 0 0 chr6 99925244 99925326 -49591711 + G-rich Low_complexity Low_complexity 2 83 0 8 1347 637 320 70 39 chr6 99925859 99926214 -49590823 + MLT2C1 LTR ERVL 14 379 -18 8 1347 247 327 88 12 chr6 99926249 99926285 -49590752 + MER53 DNA hAT 1 36 -157 8 1347 1148 208 14 19 chr6 99926285 99926496 -49590541 + B3 SINE B2 1 210 -6 8 1347 247 327 88 12 chr6 99926496 99926629 -49590408 + MER53 DNA hAT 37 183 -10 8 1347 320 283 68 56 chr6 99926645 99926806 -49590231 + L2a LINE L2 3263 3425 -1 8 1347 462 315 15 23 chr6 99926897 99927030 -49590007 + ID_B1 SINE B4 86 217 -7 8 1347 558 272 103 0 chr6 99927054 99927249 -49589788 + B3 SINE B2 1 215 -1 8 1347 2916 151 153 52 chr6 99927465 99928227 -49588810 + RMER13A LTR ERVK 1 839 -21 8 1347 234 0 0 0 chr6 99928231 99928257 -49588780 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1347 252 0 0 0 chr6 99928386 99928414 -49588623 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1347 263 358 37 23 chr6 99928739 99928874 -49588163 + MIR3 SINE MIR 11 148 -120 8 1347 1245 219 99 73 chr6 99929357 99929712 -49587325 - MTE2b LTR MaLR -6 373 10 8 1347 1068 228 28 14 chr6 99930063 99930277 -49586760 + ID_B1 SINE B4 3 219 -5 8 1347 800 247 181 32 chr6 99930313 99930623 -49586414 + ORR1E LTR MaLR 4 359 0 8 1347 507 179 0 0 chr6 99930675 99930781 -49586256 + GA-rich Low_complexity Low_complexity 2 107 0 8 1347 412 332 116 93 chr6 99930863 99931165 -49585872 - MLT1F2 LTR MaLR -42 518 210 8 1347 368 254 152 60 chr6 99931411 99931562 -49585475 - MLT1A LTR MaLR -3 371 207 8 1347 351 0 0 0 chr6 99931584 99931623 -49585414 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1347 606 75 0 0 chr6 99931623 99931715 -49585322 + (GA)n Simple_repeat Simple_repeat 1 93 0 8 1347 29 0 0 0 chr6 99931800 99931829 -49585208 + AT_rich Low_complexity Low_complexity 1 29 0 8 1347 786 238 0 47 chr6 99932246 99932418 -49584619 + RSINE1 SINE B4 2 165 0 8 1347 222 280 0 0 chr6 99932419 99932469 -49584568 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1347 707 290 173 12 chr6 99932499 99932834 -49584203 - MLT1D LTR MaLR -49 456 68 8 1347 307 262 74 120 chr6 99932831 99933048 -49583989 - MLT1D-int LTR MaLR -4 1367 1161 8 1347 384 284 41 16 chr6 99933099 99933334 -49583703 - RMER15 LTR ERVL -15 560 275 8 1347 338 188 22 45 chr6 99933596 99933685 -49583352 - MLT1D-int LTR MaLR -425 1064 978 8 1347 1547 215 122 6 chr6 99933681 99934032 -49583005 - MTD LTR MaLR -22 397 6 8 1347 356 280 51 36 chr6 99934035 99934172 -49582865 - MLT1D-int LTR MaLR -489 1000 862 8 1347 303 377 77 18 chr6 99934211 99934355 -49582682 + MER58A DNA MER1_type 38 191 -33 8 1347 720 61 0 0 chr6 99934355 99934453 -49582584 + (TCTCCC)n Simple_repeat Simple_repeat 2 99 0 8 1347 303 377 77 18 chr6 99934453 99934478 -49582559 + MER58A DNA MER1_type 192 216 -8 8 1347 391 222 39 29 chr6 99934754 99934856 -49582181 + PB1D10 SINE Alu 14 116 -1 8 1347 393 167 0 0 chr6 99936017 99936095 -49580942 + (CA)n Simple_repeat Simple_repeat 2 79 0 8 1347 352 335 328 15 chr6 99936212 99936481 -49580556 + MTEb LTR MaLR 26 378 -1 8 1347 2382 130 27 13 chr6 99937642 99938015 -49579022 - ORR1C1 LTR MaLR 0 378 1 8 1347 341 304 151 57 chr6 99938315 99938507 -49578530 - MLT1C LTR MaLR -38 429 220 8 1347 249 286 87 11 chr6 99938555 99938647 -49578390 - MLT1C LTR MaLR -284 106 8 8 1347 1682 31 0 0 chr6 99939412 99939604 -49577433 + B2_Mm1a SINE B2 1 192 -1 8 1347 1605 204 85 3 chr6 99939614 99939943 -49577094 + ORR1B2 LTR MaLR 12 367 0 8 1347 775 258 16 107 chr6 99940288 99940531 -49576506 - MTD LTR MaLR -186 233 13 8 1347 287 266 0 37 chr6 99940565 99940647 -49576390 - MTEb LTR MaLR -296 83 5 8 1347 229 327 17 50 chr6 99940875 99940994 -49576043 + MIR SINE MIR 134 248 -14 9 1347 360 0 0 0 chr6 99941074 99941114 -49575923 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1347 236 340 79 10 chr6 99941443 99941544 -49575493 - B1F1 SINE Alu -39 110 3 9 1347 469 246 157 12 chr6 99941544 99941606 -49575431 - B4A SINE B4 -136 88 5 9 1347 242 286 114 35 chr6 99941763 99942017 -49575020 + RMER17C LTR ERVK 78 351 -59 9 1347 345 146 0 0 chr6 99942033 99942088 -49574949 - ORR1C2 LTR MaLR -35 349 295 9 1347 845 158 17 6 chr6 99942706 99942884 -49574153 + CT-rich Low_complexity Low_complexity 1 180 0 9 1347 596 295 36 0 chr6 99943137 99943303 -49573734 + MER3 DNA MER1_type 3 174 -35 9 1347 292 256 11 35 chr6 99943342 99943516 -49573521 + (TATATG)n Simple_repeat Simple_repeat 1 170 0 9 1347 1029 242 88 18 chr6 99943540 99943813 -49573224 - B4A SINE B4 0 292 1 9 1347 240 303 56 13 chr6 99943859 99943951 -49573086 - MER5A DNA MER1_type -72 117 16 9 1347 365 287 71 24 chr6 99943967 99944135 -49572902 - MER5B DNA MER1_type -2 176 1 9 1347 486 0 0 0 chr6 99944924 99944978 -49572059 + (TC)n Simple_repeat Simple_repeat 1 54 0 9 1347 3279 63 0 0 chr6 99944978 99945372 -49571665 + MTB LTR MaLR 5 398 -2 9 1347 477 0 0 0 chr6 99945372 99945425 -49571612 + (TC)n Simple_repeat Simple_repeat 1 53 0 9 1347 249 33 0 0 chr6 99945425 99945454 -49571583 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1347 315 0 0 0 chr6 99945599 99945634 -49571403 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1347 895 324 95 32 chr6 99945821 99946318 -49570719 + MT2A LTR ERVL 6 533 0 9 1347 217 208 37 19 chr6 99947704 99947758 -49569279 - L3 LINE CR1 -2805 1684 1630 9 1347 198 0 0 0 chr6 99949718 99949740 -49567297 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1347 245 200 0 0 chr6 99950355 99950400 -49566637 + MIR SINE MIR 107 151 -57 9 1347 248 234 13 13 chr6 99950840 99950918 -49566119 + GA-rich Low_complexity Low_complexity 1 78 0 9 1347 388 208 0 13 chr6 99951081 99951159 -49565878 - B3A SINE B2 -120 78 2 9 1347 228 277 33 88 chr6 99951366 99951457 -49565580 + L2c LINE L2 3293 3378 -9 9 1347 317 333 35 0 chr6 99951602 99951689 -49565348 + PB1D10 SINE Alu 17 106 -43 9 1347 245 315 11 49 chr6 99951869 99951960 -49565077 - LTR16E2 LTR ERVL -9 559 394 9 1347 534 70 0 0 chr6 99952444 99952515 -49564522 + (TC)n Simple_repeat Simple_repeat 2 72 0 9 1347 1151 88 7 0 chr6 99952533 99952680 -49564357 - B1_Mus1 SINE Alu 0 148 1 9 1347 389 281 103 29 chr6 99952741 99952811 -49564226 + B4 SINE B4 6 77 -147 9 1347 224 282 72 144 chr6 99952811 99952964 -49564073 + B1_Mur3 SINE Alu 1 142 -7 9 1347 463 323 55 6 chr6 99953305 99953470 -49563567 + LTR16A LTR ERVL 269 441 -10 9 1347 379 269 142 0 chr6 99953508 99953642 -49563395 - MER34 LTR ERV1 -3 539 387 9 1347 509 234 36 0 chr6 99953696 99953807 -49563230 + PB1D7 SINE Alu 1 115 -5 9 1347 270 0 0 0 chr6 99954473 99954503 -49562534 + (CAG)n Simple_repeat Simple_repeat 3 32 0 9 1347 477 172 25 0 chr6 99954624 99954746 -49562291 + (TGGA)n Simple_repeat Simple_repeat 1 125 0 9 1347 417 316 103 40 chr6 99954990 99955214 -49561823 - MER34 LTR ERV1 -297 245 8 9 1347 213 280 0 0 chr6 99955319 99955369 -49561668 - ID2 SINE ID -33 50 1 9 1347 406 326 0 43 chr6 99955375 99955516 -49561521 - B1F SINE Alu -5 144 10 9 1347 243 316 57 66 chr6 99955518 99955640 -49561397 + YREP_Mm Unknown Unknown 174 294 -1518 9 1347 833 156 58 41 chr6 99955531 99955696 -49561341 - ID_B1 SINE B4 -72 220 57 9 1347 1064 286 29 4 chr6 99956514 99956795 -49560242 + B4A SINE B4 1 288 -4 9 1347 216 0 0 0 chr6 99956813 99956837 -49560200 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1347 235 313 15 0 chr6 99957488 99957555 -49559482 - MER5A DNA MER1_type -47 142 75 9 1347 423 98 0 0 chr6 99957556 99957617 -49559420 + (TGGA)n Simple_repeat Simple_repeat 4 64 0 9 1347 441 0 0 0 chr6 99957617 99957665 -49559372 + (TA)n Simple_repeat Simple_repeat 1 49 0 9 1347 189 0 0 0 chr6 99957665 99957685 -49559352 + (GA)n Simple_repeat Simple_repeat 2 22 0 9 1347 352 320 10 20 chr6 99957735 99957834 -49559203 + B3A SINE B2 1 98 -100 9 1347 252 122 0 0 chr6 99957863 99957904 -49559133 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 9 1347 305 233 0 143 chr6 99957931 99958036 -49559001 + MT2B LTR ERVL 152 241 -360 9 1347 589 225 0 9 chr6 99957957 99958069 -49558968 + PB1D9 SINE Alu 8 118 -2 9 1347 1070 262 27 40 chr6 99958149 99958447 -49558590 + RMER5 LTR ERV1 194 487 -47 9 1347 2195 192 68 31 chr6 99958594 99959147 -49557890 + RMER20B LTR ERVK 1 627 0 9 1347 531 31 0 0 chr6 99959189 99959254 -49557783 + (TG)n Simple_repeat Simple_repeat 1 65 0 9 1347 462 265 115 7 chr6 99959279 99959427 -49557610 - B4 SINE B4 -63 229 66 9 1347 189 0 0 0 chr6 99960187 99960208 -49556829 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 9 1347 1794 117 53 15 chr6 99960269 99960606 -49556431 - MusHAL1 LINE L1 -627 2085 1736 9 1347 200 184 61 0 chr6 99962556 99962605 -49554432 + MIR SINE MIR 64 115 -147 9 1347 346 351 0 0 chr6 99963206 99963317 -49553720 + (TATATG)n Simple_repeat Simple_repeat 2 112 0 9 1347 567 255 52 26 chr6 99963317 99963470 -49553567 - B4 SINE B4 -29 263 107 9 1347 581 244 0 8 chr6 99963554 99963678 -49553359 - PB1 SINE Alu -4 123 1 9 1347 192 158 0 0 chr6 99964263 99964301 -49552736 + (CCA)n Simple_repeat Simple_repeat 2 39 0 9 1347 279 0 0 0 chr6 99964870 99964901 -49552136 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1347 236 54 54 0 chr6 99964931 99964968 -49552069 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 9 1347 858 268 68 13 chr6 99964970 99965000 -49552037 - B4 SINE B4 -44 248 214 9 1347 207 0 0 0 chr6 99965000 99965023 -49552014 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 9 1347 858 268 68 13 chr6 99965023 99965226 -49551811 - B4 SINE B4 -79 213 2 9 1347 487 216 45 9 chr6 99966098 99966210 -49550827 - MTD LTR MaLR 0 419 304 9 1347 831 72 0 0 chr6 99966219 99966330 -49550707 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 9 1347 762 226 239 0 chr6 99966332 99966650 -49550387 + MTD LTR MaLR 26 419 0 9 1347 813 192 41 23 chr6 99966655 99966826 -49550211 - MTD LTR MaLR -245 174 1 9 1347 2320 128 15 83 chr6 99966896 99967306 -49549731 - ORR1B1 LTR MaLR -8 386 5 9 1347 379 191 48 58 chr6 99967453 99967588 -49549449 - MLT1B LTR MaLR -11 379 224 9 1347 213 234 0 0 chr6 99967661 99967725 -49549312 + GA-rich Low_complexity Low_complexity 2 65 0 9 1347 249 328 89 8 chr6 99967743 99967866 -49549171 - MLT1B LTR MaLR -250 140 8 9 1347 261 140 0 0 chr6 99967995 99968052 -49548985 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1347 336 256 96 124 chr6 99968149 99968399 -49548638 - MLT1K LTR MaLR -12 583 341 9 1347 435 261 46 33 chr6 99968353 99968543 -49548494 + MTC LTR MaLR 187 421 0 9 1347 360 0 0 0 chr6 99968655 99968695 -49548342 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 9 1347 340 258 88 49 chr6 99968695 99968797 -49548240 - PB1 SINE Alu -11 116 11 9 1347 427 232 75 103 chr6 99969078 99969289 -49547748 + MLT2B4 LTR ERVL 235 514 -42 9 1347 972 255 35 57 chr6 99969331 99969410 -49547627 - B4A SINE B4 -14 278 195 9 1347 198 0 0 0 chr6 99969410 99969432 -49547605 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 1347 972 255 35 57 chr6 99969432 99969585 -49547452 - B4A SINE B4 -98 194 52 9 1347 4815 123 56 92 chr6 99969585 99970477 -49546560 + RMER13A LTR ERVK 1 860 0 9 1347 972 255 35 57 chr6 99970477 99970526 -49546511 - B4A SINE B4 -241 51 2 9 1347 236 386 34 39 chr6 99970817 99971065 -49545972 + MIRb SINE MIR 6 261 -7 9 1347 929 226 24 33 chr6 99971319 99971530 -49545507 + ID_B1 SINE B4 1 209 -15 9 1347 247 274 13 27 chr6 99971531 99971606 -49545431 + GA-rich Low_complexity Low_complexity 2 75 0 9 1347 1125 76 0 0 chr6 99972734 99972947 -49544090 + (TC)n Simple_repeat Simple_repeat 1 213 0 9 1347 423 0 0 0 chr6 99972947 99972993 -49544044 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1347 271 286 39 39 chr6 99973011 99973113 -49543924 + MIR SINE MIR 125 226 -36 9 1347 866 297 85 22 chr6 99973551 99973999 -49543038 - L1_Mur3 LINE L1 -1745 4135 3660 9 1347 195 129 0 0 chr6 99973999 99974030 -49543007 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1347 266 250 30 30 chr6 99974070 99974136 -49542901 + B3A SINE B2 6 71 -127 9 1347 537 68 0 0 chr6 99974347 99974421 -49542616 + (TG)n Simple_repeat Simple_repeat 2 75 0 9 1347 700 196 69 7 chr6 99974423 99974567 -49542470 - B3A SINE B2 -45 153 1 9 1347 683 280 8 93 chr6 99974778 99975011 -49542026 + B4A SINE B4 1 215 -77 9 1347 273 57 0 0 chr6 99975011 99975046 -49541991 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 9 1347 683 280 8 93 chr6 99975046 99975060 -49541977 + B4A SINE B4 216 227 -65 9 1347 461 84 14 0 chr6 99975086 99975157 -49541880 + (CA)n Simple_repeat Simple_repeat 1 72 0 9 1347 935 227 52 28 chr6 99976211 99976424 -49540613 + B4 SINE B4 51 268 -24 9 1347 367 308 165 30 chr6 99976924 99977205 -49539832 + MLT1D LTR MaLR 5 321 -184 9 1347 1378 259 12 83 chr6 99977205 99977405 -49539632 + MTEa LTR MaLR 1 201 -178 9 1347 834 39 0 0 chr6 99977405 99977507 -49539530 + (CA)n Simple_repeat Simple_repeat 2 103 0 9 1347 1378 259 12 83 chr6 99977507 99977714 -49539323 + MTEa LTR MaLR 202 379 0 9 1347 367 271 72 10 chr6 99977714 99977794 -49539243 + MLT1D LTR MaLR 306 390 -77 9 1347 819 145 123 300 chr6 99978183 99978637 -49538400 - ORR1D1 LTR MaLR 0 374 1 9 1347 576 0 0 0 chr6 99978733 99978797 -49538240 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1347 581 217 16 55 chr6 99978841 99978968 -49538069 - B3A SINE B2 -76 122 1 9 1347 259 307 59 0 chr6 99978997 99979098 -49537939 + LTR90B LTR LTR 663 769 -27 1 1347 372 218 78 10 chr6 99979380 99979482 -49537555 + MTEa LTR MaLR 269 377 -2 1 1347 859 251 174 0 chr6 99979825 99980072 -49536965 - B4 SINE B4 -2 290 1 1 1347 235 253 39 26 chr6 99980076 99980153 -49536884 + LTR33 LTR ERVL 438 515 0 1 1347 180 317 121 12 chr6 99980215 99980298 -49536739 - MIRc SINE MIR -74 194 103 1 1347 916 241 115 12 chr6 99980944 99981196 -49535841 - B4A SINE B4 -11 281 4 1 1347 589 299 72 113 chr6 99982048 99982421 -49534616 - MTEa LTR MaLR -20 359 2 1 1347 231 278 93 0 chr6 99982519 99982616 -49534421 - MLT1F LTR MaLR -435 113 8 1 1347 482 332 46 21 chr6 99983364 99983601 -49533436 - MLT1D LTR MaLR -259 246 4 1 1347 4032 44 4 0 chr6 99984035 99984508 -49532529 - MT2C_Mm LTR ERVL 0 475 1 1 1347 1944 185 42 5 chr6 99984522 99984923 -49532114 - Lx LINE L1 0 6654 6239 1 1347 692 299 22 38 chr6 99986363 99986547 -49530490 - B3A SINE B2 -16 182 2 1 1347 298 250 57 57 chr6 99986688 99986794 -49530243 - PB1D10 SINE Alu -8 109 4 1 1347 248 309 176 91 chr6 99987642 99988074 -49528963 + MLT1G3 LTR MaLR 108 572 -7 1 1347 977 232 59 62 chr6 99988312 99988601 -49528436 + B4A SINE B4 1 288 -4 1 1347 252 290 14 0 chr6 99988605 99988674 -49528363 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1347 218 250 0 0 chr6 99988944 99988981 -49528056 + polypurine Low_complexity Low_complexity 2 38 0 1 1347 4520 40 27 0 chr6 99988981 99989548 -49527489 + L1Md_F3 LINE L1 6021 6584 0 1 1347 319 298 107 83 chr6 99989972 99990166 -49526871 + B4 SINE B4 1 202 -90 1 1347 528 59 0 0 chr6 99990166 99990234 -49526803 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1347 319 298 107 83 chr6 99990234 99990255 -49526782 + B4 SINE B4 203 220 -72 1 1347 517 286 74 6 chr6 99991943 99992119 -49524918 - MER58A DNA MER1_type -36 188 1 1 1347 341 294 12 0 chr6 99992343 99992428 -49524609 + MER5A1 DNA MER1_type 45 130 -36 1 1347 902 203 40 25 chr6 99992656 99993043 -49523994 + RMER17C LTR ERVK 7 410 0 1 1347 280 304 0 88 chr6 99993268 99993284 -49523753 + MT2B2 LTR ERVL 150 207 -394 1 1347 449 292 0 0 chr6 99993284 99993380 -49523657 + B1F SINE Alu 2 97 -52 1 1347 280 304 0 88 chr6 99993380 99993393 -49523644 + MT2B2 LTR ERVL 208 263 -338 1 1347 530 313 99 80 chr6 99993592 99994016 -49523021 - MER31B LTR ERV1 -34 432 1 1 1347 561 64 0 0 chr6 99994785 99994863 -49522174 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1347 404 278 50 45 chr6 99996679 99996858 -49520179 - MIRm SINE MIR -93 169 3 1 1347 827 265 39 25 chr6 99997313 99997592 -49519445 - B4A SINE B4 -6 286 4 1 1347 230 253 58 81 chr6 99997621 99997707 -49519330 + MER5B DNA MER1_type 10 93 -85 1 1347 1892 149 8 77 chr6 99997931 99998295 -49518742 + ORR1B1 LTR MaLR 21 359 -35 1 1347 181 295 223 34 chr6 99999400 99999691 -49517346 - L2 LINE L2 -338 3081 2736 1 1347 463 289 94 0 chr6 99999769 99999918 -49517119 + MER58A DNA MER1_type 46 208 -16 1 1347 339 44 0 0 chr6 100000586 100000631 -49516406 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1347 805 238 152 8 chr6 100000636 100000886 -49516151 - B4A SINE B4 -6 286 1 2 1347 277 315 115 18 chr6 100001786 100001951 -49515086 - L2b LINE L2 -211 3164 2984 3 1347 409 285 49 20 chr6 100003692 100003864 -49513173 - MIR SINE MIR -60 208 27 4 1347 386 291 56 86 chr6 100004560 100004722 -49512315 - MER20 DNA MER1_type -32 187 31 5 1347 203 0 37 0 chr6 100004914 100004941 -49512096 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 6 1347 243 284 122 79 chr6 100005366 100005580 -49511457 - RMER21A LTR ERV1 -34 913 691 7 1347 272 309 108 72 chr6 100006657 100006852 -49510185 + MER63A DNA AcHobo 9 210 0 8 1347 369 0 0 0 chr6 100007075 100007116 -49509921 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1347 894 273 9 26 chr6 100007126 100007352 -49509685 + B4 SINE B4 6 227 -65 1 1347 405 0 0 0 chr6 100007360 100007405 -49509632 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1348 233 200 43 71 chr6 100008071 100008141 -49508896 - ORR1D2 LTR MaLR 0 370 303 1 1348 776 169 43 22 chr6 100008144 100008283 -49508754 + B1_Mur3 SINE Alu 3 144 -5 1 1348 437 261 110 46 chr6 100009036 100009209 -49507828 - MIRb SINE MIR -16 252 69 1 1348 200 271 0 28 chr6 100010229 100010301 -49506736 + G-rich Low_complexity Low_complexity 3 72 0 1 1348 325 273 80 0 chr6 100010302 100010390 -49506647 + LTR33A_ LTR ERVL 72 166 -365 1 1348 225 83 0 0 chr6 100010398 100010434 -49506603 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 1 1348 670 284 65 65 chr6 100010791 100011036 -49506001 + B4 SINE B4 13 257 -35 1 1348 722 60 10 0 chr6 100011037 100011137 -49505900 + (CA)n Simple_repeat Simple_repeat 1 101 0 1 1348 701 290 7 0 chr6 100011270 100011425 -49505612 - RSINE1 SINE B4 0 165 10 2 1348 531 82 0 0 chr6 100011426 100011499 -49505538 + (GGGA)n Simple_repeat Simple_repeat 2 74 0 2 1348 261 0 0 0 chr6 100011501 100011530 -49505507 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 2 1348 335 159 32 0 chr6 100011617 100011680 -49505357 - ID4 SINE ID -16 67 3 2 1348 967 262 70 80 chr6 100011683 100012057 -49504980 - ORR1D2 LTR MaLR 0 370 1 2 1348 2124 283 61 43 chr6 100012363 100013146 -49503891 - RLTR40 LTR ERVK -18 799 3 2 1348 314 287 30 37 chr6 100014174 100014308 -49502729 + CT-rich Low_complexity Low_complexity 6 138 0 2 1348 466 307 6 33 chr6 100014331 100014513 -49502524 + CT-rich Low_complexity Low_complexity 4 180 0 2 1348 186 306 61 0 chr6 100014943 100014992 -49502045 + L4 LINE RTE 620 671 -1358 2 1348 463 211 144 30 chr6 100015373 100015505 -49501532 - PB1D10 SINE Alu -2 147 1 2 1348 378 260 0 25 chr6 100015855 100015934 -49501103 + ID4_ SINE ID 2 78 -5 2 1348 2616 77 3 0 chr6 100015991 100016317 -49500720 + ORR1A2 LTR MaLR 1 327 0 3 1348 1049 282 12 12 chr6 100016320 100016568 -49500469 + B4 SINE B4 2 249 -43 3 1348 251 93 23 0 chr6 100016568 100016611 -49500426 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 3 1348 450 0 0 0 chr6 100016616 100016666 -49500371 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1348 501 17 0 0 chr6 100016666 100016723 -49500314 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1348 189 167 95 0 chr6 100017872 100017914 -49499123 + L4 LINE RTE 1307 1352 -677 2 1348 841 269 34 5 chr6 100018201 100018410 -49498627 - ID_B1 SINE B4 -7 217 3 3 1348 1115 270 154 8 chr6 100018778 100019129 -49497908 - MTD LTR MaLR 0 419 18 3 1348 387 239 158 9 chr6 100019136 100019250 -49497787 - RMER30 DNA MER1_type -62 140 10 3 1348 852 251 102 31 chr6 100020011 100020266 -49496771 + B4 SINE B4 15 287 -5 3 1348 24 0 0 0 chr6 100021074 100021098 -49495939 + GC_rich Low_complexity Low_complexity 1 24 0 3 1348 2965 205 177 37 chr6 100021416 100022194 -49494843 + RMER1B Other Other 49 950 -116 4 1348 281 47 0 23 chr6 100022194 100022238 -49494799 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1348 2965 205 177 37 chr6 100022238 100022300 -49494737 + RMER1B Other Other 951 1007 -59 4 1348 189 0 0 0 chr6 100022795 100022816 -49494221 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1348 227 171 0 68 chr6 100022941 100022985 -49494052 + L2b LINE L2 3129 3169 -206 4 1348 279 0 0 0 chr6 100023670 100023701 -49493336 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1348 414 0 0 0 chr6 100023701 100023746 -49493291 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 1348 283 330 143 26 chr6 100023784 100024014 -49493023 + LTR16E1 LTR ERVL 281 537 -1 4 1348 452 289 29 27 chr6 100024099 100024267 -49492770 + B1F SINE Alu 1 146 -3 4 1348 1249 48 0 0 chr6 100024277 100024423 -49492614 + B1_Mm SINE Alu 2 147 0 4 1348 180 0 0 0 chr6 100024423 100024443 -49492594 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1348 608 250 8 23 chr6 100025258 100025389 -49491648 + B1_Mur3 SINE Alu 1 129 -20 5 1348 564 222 248 3 chr6 100025517 100025812 -49491225 + MTEa LTR MaLR 2 378 -1 5 1348 1852 175 24 68 chr6 100026028 100026408 -49490629 - ORR1D1 LTR MaLR -1 373 11 5 1348 807 307 42 81 chr6 100026563 100026921 -49490116 + MLT1A0 LTR MaLR 19 362 -3 5 1348 570 204 227 6 chr6 100027013 100027176 -49489861 - B3 SINE B2 -17 199 1 5 1348 333 82 0 0 chr6 100027209 100027258 -49489779 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1348 256 235 20 150 chr6 100027361 100027461 -49489576 - MER96 DNA hAT -1 174 88 5 1348 1150 194 27 22 chr6 100027461 100027683 -49489354 - MTD LTR MaLR 0 419 197 5 1348 1110 136 56 0 chr6 100027702 100027900 -49489137 - MusHAL1 LINE L1 -712 2000 1792 5 1348 627 108 0 0 chr6 100027902 100027995 -49489042 + (TCCC)n Simple_repeat Simple_repeat 1 93 0 5 1348 798 199 0 0 chr6 100028019 100028155 -49488882 - B1_Mur1 SINE Alu -13 136 1 6 1348 783 269 10 25 chr6 100028158 100028360 -49488677 - MTD LTR MaLR -213 206 8 5 1348 759 300 50 46 chr6 100028479 100028738 -49488299 + B4A SINE B4 33 292 0 6 1348 972 163 52 0 chr6 100028779 100028951 -49488086 + B2_Mm2 SINE B2 2 182 -13 6 1348 225 190 65 65 chr6 100029612 100029674 -49487363 - MLT1I LTR MaLR -362 291 230 6 1348 193 200 94 73 chr6 100029968 100030070 -49486967 - MIR SINE MIR -110 158 62 6 1348 1139 216 56 59 chr6 100030092 100030378 -49486659 - B4 SINE B4 -6 286 2 6 1348 600 227 113 49 chr6 100031101 100031359 -49485678 + MTEa LTR MaLR 1 379 0 6 1348 739 286 75 61 chr6 100031704 100031983 -49485054 + B4 SINE B4 8 290 -2 6 1348 306 328 65 36 chr6 100032854 100033033 -49484004 - MLT1I LTR MaLR -164 247 65 6 1348 387 341 115 21 chr6 100033328 100033577 -49483460 + MLT1H1 LTR MaLR 4 236 -319 6 1348 229 318 21 64 chr6 100033590 100033684 -49483353 + MLT1H1 LTR MaLR 304 393 -162 6 1348 610 217 79 43 chr6 100033742 100033922 -49483115 - B3 SINE B2 -12 183 2 6 1348 1438 134 4 13 chr6 100034046 100034273 -49482764 + URR1B DNA MER1_type 1 225 0 7 1348 559 263 40 81 chr6 100034593 100034841 -49482196 + RLTR14 LTR ERV1 145 382 0 7 1348 404 315 38 15 chr6 100035165 100035297 -49481740 - ID_B1 SINE B4 -4 220 86 7 1348 532 302 82 11 chr6 100035345 100035529 -49481508 + MLT1J2 LTR MaLR 22 218 -230 7 1348 308 276 26 0 chr6 100036542 100036618 -49480419 - MER117 DNA MER1_type -8 189 112 7 1348 475 276 0 30 chr6 100037012 100037143 -49479894 - MER117 DNA MER1_type -5 192 66 7 1348 463 232 31 10 chr6 100038227 100038323 -49478714 + B4A SINE B4 195 292 0 7 1348 305 248 0 9 chr6 100038325 100038439 -49478598 + (CA)n Simple_repeat Simple_repeat 1 113 0 7 1348 417 156 0 0 chr6 100038441 100038518 -49478519 + GA-rich Low_complexity Low_complexity 2 78 0 7 1348 619 75 11 11 chr6 100038509 100038604 -49478433 + (GGAAA)n Simple_repeat Simple_repeat 4 98 0 7 1348 251 222 19 0 chr6 100038606 100038660 -49478377 + B4A SINE B4 223 277 -15 7 1348 360 161 0 0 chr6 100039514 100039595 -49477442 + CT-rich Low_complexity Low_complexity 1 81 0 8 1348 186 43 0 0 chr6 100039595 100039618 -49477419 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1348 322 324 31 28 chr6 100039764 100039916 -49477121 + MIRb SINE MIR 28 188 -80 8 1348 328 296 10 32 chr6 100040048 100040174 -49476863 + B4 SINE B4 2 123 -169 8 1348 321 155 0 36 chr6 100040195 100040284 -49476753 - B2_Mm2 SINE B2 -26 169 47 8 1348 1244 108 11 17 chr6 100040316 100040495 -49476542 - B2_Mm1t SINE B2 -14 179 2 8 1348 665 222 132 24 chr6 100040768 100040934 -49476103 - B4 SINE B4 0 292 109 8 1348 710 179 71 7 chr6 100040950 100041091 -49475946 - B3A SINE B2 -47 151 2 8 1348 231 336 112 0 chr6 100041782 100041889 -49475148 - MLT1K LTR MaLR -75 520 402 8 1348 563 290 170 67 chr6 100041985 100042432 -49474605 - LTR33A_ LTR ERVL -16 515 23 8 1348 446 251 57 7 chr6 100043815 100043995 -49473042 - RLTR14-int LTR ERV1 -1889 3428 3276 9 1348 480 285 81 34 chr6 100044246 100044612 -49472425 - MURVY-int LTR ERV1 -3133 4473 4141 9 1348 306 362 40 28 chr6 100044990 100045325 -49471712 - MURVY-int LTR ERV1 -3761 3795 3633 9 1348 267 79 0 0 chr6 100045390 100045428 -49471609 + (T)n Simple_repeat Simple_repeat 1 38 0 9 1348 813 185 14 7 chr6 100045549 100045696 -49471341 - B1_Mus1 SINE Alu 0 148 1 9 1348 579 335 106 79 chr6 100046111 100046581 -49470456 - MLT1J LTR MaLR -29 483 1 9 1348 399 197 66 0 chr6 100046737 100046813 -49470224 - MTE2b LTR MaLR -1 378 298 9 1348 550 277 199 44 chr6 100046994 100047266 -49469771 - MTE2b LTR MaLR -63 316 3 9 1348 1039 205 14 41 chr6 100047698 100047917 -49469120 - URR1B DNA MER1_type -8 217 5 9 1348 689 243 115 6 chr6 100048073 100048255 -49468782 - MER20 DNA MER1_type -12 207 6 9 1348 1075 251 36 14 chr6 100048524 100048803 -49468234 + B4 SINE B4 2 286 -6 9 1348 345 277 79 0 chr6 100048856 100048957 -49468080 + PB1D10 SINE Alu 1 109 -8 9 1348 654 236 12 81 chr6 100049253 100049336 -49467701 + ORR1D2 LTR MaLR 4 85 -285 1 1348 2201 112 88 72 chr6 100049336 100049723 -49467314 + ORR1B1 LTR MaLR 2 394 0 1 1348 654 236 12 81 chr6 100049723 100049800 -49467237 + ORR1D2 LTR MaLR 86 153 -217 1 1348 230 264 111 0 chr6 100049812 100049884 -49467153 + RSINE1 SINE B4 86 165 0 1 1348 22 0 0 0 chr6 100050837 100050859 -49466178 + AT_rich Low_complexity Low_complexity 1 22 0 1 1348 250 231 77 0 chr6 100051431 100051496 -49465541 + MIRc SINE MIR 85 154 -114 1 1348 637 237 183 0 chr6 100051630 100051799 -49465238 - B3 SINE B2 -5 211 12 1 1348 535 148 8 61 chr6 100051808 100051919 -49465118 - B1F2 SINE Alu -7 113 2 1 1348 256 253 0 142 chr6 100051829 100051935 -49465102 - MT2B LTR ERVL -361 240 150 1 1348 436 311 64 109 chr6 100052203 100052470 -49464567 + B4 SINE B4 33 287 -5 1 1348 529 194 29 0 chr6 100052490 100052665 -49464372 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1348 224 341 90 28 chr6 100054009 100054187 -49462850 + MIR SINE MIR 26 214 -48 1 1348 859 281 51 71 chr6 100055004 100055356 -49461681 + MLT2C1 LTR ERVL 1 345 -52 1 1348 892 312 138 13 chr6 100055372 100055924 -49461113 - L1M4b LINE L1 -4167 3167 2547 1 1348 903 221 50 64 chr6 100055998 100056278 -49460759 - RMER1C Other Other -12 1330 1055 1 1348 250 289 70 50 chr6 100056380 100056580 -49460457 - L1M4b LINE L1 -5645 1689 1486 1 1348 339 284 9 9 chr6 100056652 100056762 -49460275 - L1M4b LINE L1 -6031 1303 1194 1 1348 252 122 0 0 chr6 100056943 100056984 -49460053 + (CTG)n Simple_repeat Simple_repeat 1 41 0 1 1348 331 397 84 8 chr6 100057101 100057350 -49459687 - L1M4b LINE L1 -6544 790 523 1 1348 538 276 116 88 chr6 100058062 100058416 -49458621 - L1M4b LINE L1 -6964 370 7 1 1348 258 345 58 0 chr6 100058532 100058619 -49458418 + MIRb SINE MIR 96 187 -81 1 1348 484 231 25 25 chr6 100058715 100058835 -49458202 + PB1D7 SINE Alu 1 120 0 1 1348 704 175 19 71 chr6 100058998 100059152 -49457885 - B1_Mm SINE Alu 0 147 2 1 1348 547 258 288 15 chr6 100059369 100059640 -49457397 + Lx8 LINE L1 6845 7189 -284 1 1348 237 323 19 83 chr6 100059659 100059767 -49457270 + RMER15 LTR ERVL 362 462 -113 1 1348 32 26 0 0 chr6 100059906 100059945 -49457092 + AT_rich Low_complexity Low_complexity 1 39 0 1 1348 396 0 0 0 chr6 100060083 100060127 -49456910 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1348 795 289 9 32 chr6 100060406 100060624 -49456413 + ID_B1 SINE B4 2 214 -10 1 1348 526 283 11 39 chr6 100060633 100060813 -49456224 + L1M2 LINE L1 4871 5045 -1098 1 1348 356 290 92 0 chr6 100060832 100060963 -49456074 + B1F2 SINE Alu 1 143 -6 1 1348 226 150 0 91 chr6 100060983 100061027 -49456010 - MLT1B LTR MaLR -348 42 3 1 1348 253 263 143 13 chr6 100061467 100061544 -49455493 + LTR33A_ LTR ERVL 80 166 -365 1 1348 389 280 0 70 chr6 100061954 100062069 -49454968 + MLT1A0 LTR MaLR 27 133 -232 1 1348 414 195 13 0 chr6 100062072 100062149 -49454888 + B4 SINE B4 1 78 -214 1 1348 344 319 104 12 chr6 100062153 100062176 -49454861 - B4 SINE B4 -56 236 128 1 1348 616 207 43 0 chr6 100062176 100062292 -49454745 - B1_Mur3 SINE Alu -26 123 3 1 1348 233 29 29 0 chr6 100062301 100062335 -49454702 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1348 344 316 106 12 chr6 100062335 100062371 -49454666 - B4 SINE B4 -219 73 34 1 1348 713 286 48 0 chr6 100062346 100062535 -49454502 + B4 SINE B4 95 292 0 1 1348 280 331 66 40 chr6 100062622 100062773 -49454264 + MLT1A0 LTR MaLR 191 345 -63 1 1348 278 277 181 45 chr6 100062812 100062967 -49454070 - MER20 DNA MER1_type -11 208 33 1 1348 735 259 32 21 chr6 100063308 100063497 -49453540 - B3 SINE B2 -25 191 1 1 1348 1013 281 29 50 chr6 100064335 100064560 -49452477 + B4A SINE B4 6 225 -67 1 1348 243 0 0 0 chr6 100064560 100064587 -49452450 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1348 1013 281 29 50 chr6 100064587 100064642 -49452395 + B4A SINE B4 226 280 -12 1 1348 204 40 0 0 chr6 100064645 100064670 -49452367 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1348 468 288 80 0 chr6 100064671 100064796 -49452241 + ID_B1 SINE B4 86 220 -4 1 1348 185 196 0 21 chr6 100064796 100064843 -49452194 + GA-rich Low_complexity Low_complexity 1 46 0 1 1348 302 260 12 38 chr6 100065556 100065636 -49451401 - ID4_ SINE ID -4 79 2 1 1348 389 178 11 53 chr6 100065665 100065760 -49451277 - PB1D10 SINE Alu -26 91 1 1 1348 375 228 31 54 chr6 100067525 100067655 -49449382 - MER33 DNA MER1_type -15 309 183 1 1348 656 311 56 56 chr6 100067877 100068180 -49448857 - MLT1A0 LTR MaLR -1 364 62 1 1348 1498 199 122 18 chr6 100068402 100068730 -49448307 - ORR1D1 LTR MaLR -3 371 10 1 1348 440 351 84 24 chr6 100068784 100069035 -49448002 + MLT1C LTR MaLR 200 465 -2 1 1348 2938 62 0 11 chr6 100069502 100069879 -49447158 - L1Md_F2 LINE L1 -8 6574 6202 1 1348 613 238 32 19 chr6 100070843 100070997 -49446040 + RSINE1 SINE B4 1 156 -9 1 1348 227 274 13 76 chr6 100071036 100071115 -49445922 + ID4 SINE ID 2 75 -8 1 1348 201 343 140 22 chr6 100071523 100071702 -49445335 + L2 LINE L2 2449 2648 -771 1 1348 237 283 0 0 chr6 100071702 100071755 -49445282 + tRNA-Ala-GCY_ tRNA tRNA 2 54 -21 1 1348 352 172 0 0 chr6 100071752 100071810 -49445227 - MTEa LTR MaLR -7 372 315 1 1348 256 202 0 37 chr6 100071823 100071905 -49445132 + GA-rich Low_complexity Low_complexity 4 82 0 1 1348 880 212 76 28 chr6 100071909 100072253 -49444784 - RMER17C LTR ERVK -16 394 1 1 1348 2528 93 21 5 chr6 100072293 100072842 -49444195 - RMER19A LTR ERVK 0 737 1 1 1348 629 313 46 61 chr6 100072851 100073113 -49443924 - MTEa LTR MaLR -79 300 43 1 1348 273 215 0 0 chr6 100073596 100073689 -49443348 + CT-rich Low_complexity Low_complexity 2 94 0 1 1348 196 344 103 37 chr6 100073805 100073941 -49443096 + MIRm SINE MIR 121 265 -11 1 1348 244 263 18 0 chr6 100075183 100075240 -49441797 - BC1_Mm scRNA scRNA -90 62 5 1 1348 266 295 0 18 chr6 100075397 100075511 -49441526 + (CCCGAA)n Simple_repeat Simple_repeat 5 116 0 1 1348 339 269 138 9 chr6 100075765 100075874 -49441163 + RSINE1 SINE B4 17 139 -26 1 1348 191 217 17 0 chr6 100075874 100075934 -49441103 + CT-rich Low_complexity Low_complexity 1 61 0 1 1348 298 338 112 40 chr6 100076436 100076812 -49440225 - MLT1D LTR MaLR -86 419 17 1 1348 191 159 222 0 chr6 100077306 100077369 -49439668 - MIRc SINE MIR -123 145 69 1 1348 368 333 50 8 chr6 100078223 100078344 -49438693 + MIRb SINE MIR 2 127 -141 1 1348 202 172 30 121 chr6 100079002 100079068 -49437969 + MIRb SINE MIR 172 231 -37 1 1348 617 274 126 40 chr6 100079996 100080194 -49436843 - ID_B1 SINE B4 -2 222 8 1 1348 814 246 13 13 chr6 100080914 100081117 -49435920 + B3A SINE B2 12 215 -1 1 1348 307 313 86 29 chr6 100081534 100081670 -49435367 + MIR SINE MIR 13 160 -116 1 1348 268 296 57 0 chr6 100081688 100081776 -49435261 - LTR16B LTR ERVL -8 455 363 1 1348 257 341 75 98 chr6 100081830 100082043 -49434994 + B4 SINE B4 78 282 -10 1 1348 441 0 0 0 chr6 100082046 100082095 -49434942 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1348 385 315 69 8 chr6 100082154 100082285 -49434752 + LTR16B2 LTR ERVL 156 294 -168 1 1348 541 132 0 42 chr6 100082283 100082378 -49434659 - PB1D10 SINE Alu 0 117 27 1 1348 295 269 234 22 chr6 100082325 100082462 -49434575 - B4A SINE B4 -125 167 2 1 1348 1399 80 32 0 chr6 100082743 100082930 -49434107 + B2_Mm2 SINE B2 2 194 -1 1 1348 481 278 148 80 chr6 100083837 100084330 -49432707 + L1MA5A LINE L1 5327 5938 -359 1 1348 822 158 37 28 chr6 100084441 100084625 -49432412 + B3 SINE B2 1 197 -1 1 1348 446 250 0 17 chr6 100085668 100085786 -49431251 - URR1B DNA MER1_type 0 225 110 1 1348 232 265 164 58 chr6 100085786 100085874 -49431163 + CYRA11_Mm Unknown Y-chromosome 171 398 -219 1 1348 285 352 103 111 chr6 100086053 100086449 -49430588 + MLT1H LTR MaLR 51 443 -106 1 1348 258 323 186 0 chr6 100087270 100087394 -49429643 + Charlie1 DNA MER1_type 91 237 -2544 1 1348 227 299 141 20 chr6 100087437 100087456 -49429581 + ID_B1 SINE B4 67 122 -102 1 1348 255 281 16 0 chr6 100087456 100087520 -49429517 + B1F1 SINE Alu 3 67 -82 1 1348 227 299 141 20 chr6 100087520 100087536 -49429501 + ID_B1 SINE B4 123 177 -47 1 1348 603 196 0 0 chr6 100087813 100087971 -49429066 + (TG)n Simple_repeat Simple_repeat 1 158 0 1 1348 810 260 6 6 chr6 100087971 100088153 -49428884 - B3A SINE B2 -16 182 1 1 1348 210 278 19 0 chr6 100088479 100088530 -49428507 + B4 SINE B4 6 57 -235 1 1348 688 142 9 0 chr6 100088530 100088636 -49428401 + MTC LTR MaLR 1 107 -314 1 1348 1273 159 63 0 chr6 100088634 100088841 -49428196 - URR1B DNA MER1_type -5 220 1 1 1348 1698 167 85 7 chr6 100088841 100089136 -49427901 + MTC LTR MaLR 104 421 0 1 1348 232 196 0 0 chr6 100089249 100089300 -49427737 + B3 SINE B2 165 215 -1 1 1348 625 271 10 81 chr6 100089301 100089510 -49427527 + B4A SINE B4 81 274 -18 1 1348 599 265 39 19 chr6 100089620 100089774 -49427263 - RSINE1 SINE B4 -6 159 3 1 1348 330 308 77 0 chr6 100091022 100091126 -49425911 + PB1D10 SINE Alu 1 112 -5 1 1348 348 24 0 0 chr6 100091155 100091196 -49425841 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1348 342 276 198 9 chr6 100091216 100091322 -49425715 - RSINE1 SINE B4 -36 129 4 1 1348 423 0 0 0 chr6 100091404 100091451 -49425586 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1348 784 271 64 15 chr6 100092232 100092434 -49424603 + B4 SINE B4 2 213 -79 1 1348 3374 53 0 0 chr6 100092957 100093356 -49423681 - MTB LTR MaLR 0 400 2 1 1348 266 329 188 45 chr6 100094684 100094929 -49422108 + LTR16C LTR ERVL 186 465 -24 1 1348 832 330 48 56 chr6 100094944 100095300 -49421737 + ORR1E LTR MaLR 1 353 -6 1 1348 343 301 30 65 chr6 100095988 100096187 -49420850 + Ricksha_c DNA MuDR 710 901 -1147 1 1348 272 205 22 78 chr6 100097324 100097414 -49419623 - MTE2b LTR MaLR -294 85 1 1 1348 780 165 267 12 chr6 100098068 100098240 -49418797 + B3 SINE B2 1 216 0 1 1348 426 342 30 108 chr6 100098304 100098609 -49418428 + B4 SINE B4 1 281 -11 2 1348 270 0 0 0 chr6 100098623 100098653 -49418384 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1348 378 0 0 0 chr6 100098653 100098694 -49418343 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1348 342 0 0 0 chr6 100098911 100098949 -49418088 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1348 536 319 69 44 chr6 100099327 100099645 -49417392 + MER121 Unknown Unknown 12 337 -75 2 1348 416 312 56 25 chr6 100099855 100100016 -49417021 - MER58A DNA MER1_type 0 224 59 2 1348 363 178 84 53 chr6 100100031 100100126 -49416911 + B1F1 SINE Alu 1 98 -51 2 1348 244 291 149 60 chr6 100100126 100100198 -49416839 + B4 SINE B4 86 267 -25 2 1348 190 188 42 0 chr6 100101034 100101082 -49415955 + MER5A DNA MER1_type 4 53 -136 2 1348 384 261 66 25 chr6 100101365 100101487 -49415550 - MIR SINE MIR -34 228 102 2 1348 261 0 0 0 chr6 100101567 100101596 -49415441 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1348 925 151 14 0 chr6 100101739 100101885 -49415152 + B1_Mur4 SINE Alu 2 149 -1 2 1348 385 213 177 44 chr6 100102271 100102369 -49414668 + MLT1B LTR MaLR 239 353 -37 2 1348 194 0 0 37 chr6 100102369 100102396 -49414641 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 2 1348 385 213 177 44 chr6 100102396 100102410 -49414627 + MLT1B LTR MaLR 354 366 -24 2 1348 245 210 16 0 chr6 100102593 100102655 -49414382 + CT-rich Low_complexity Low_complexity 1 63 0 2 1348 625 24 24 0 chr6 100102786 100102869 -49414168 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 2 1348 634 246 133 25 chr6 100102869 100103060 -49413977 - ID_B1 SINE B4 -7 217 5 2 1348 247 179 31 31 chr6 100103888 100103986 -49413051 + (CATA)n Simple_repeat Simple_repeat 4 101 0 2 1348 204 205 41 33 chr6 100104053 100104174 -49412863 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 2 1348 221 167 24 0 chr6 100104184 100104226 -49412811 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1348 504 0 0 0 chr6 100104479 100104535 -49412502 + (TC)n Simple_repeat Simple_repeat 2 57 0 2 1348 270 0 0 0 chr6 100104535 100104564 -49412473 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1348 380 267 83 28 chr6 100104569 100104677 -49412360 - RSINE1 SINE B4 -48 117 4 2 1348 1008 176 144 0 chr6 100104694 100104882 -49412155 + B3 SINE B2 1 215 -1 2 1348 1136 69 7 0 chr6 100105011 100105155 -49411882 + B1_Mus1 SINE Alu 4 148 0 2 1348 317 280 39 83 chr6 100105202 100105358 -49411679 - MIR SINE MIR -99 163 15 2 1348 185 259 48 65 chr6 100105395 100105457 -49411580 - L2c LINE L2 -228 3159 3099 2 1348 219 268 28 0 chr6 100105729 100105800 -49411237 - MIRb SINE MIR -164 104 32 2 1348 687 211 39 0 chr6 100106214 100106342 -49410695 + B1_Mur2 SINE Alu 2 134 -15 2 1348 275 122 0 20 chr6 100106351 100106401 -49410636 + (AGGGGG)n Simple_repeat Simple_repeat 6 54 0 2 1348 390 292 34 42 chr6 100106413 100106531 -49410506 + B4 SINE B4 98 214 -78 2 1348 500 254 32 84 chr6 100106539 100106694 -49410343 + RSINE1 SINE B4 2 148 -17 2 1348 376 274 0 0 chr6 100106739 100106812 -49410225 + B4 SINE B4 220 292 0 2 1348 340 262 153 38 chr6 100107532 100107650 -49409387 + L1MB5 LINE L1 5731 5873 -305 2 1348 354 182 76 0 chr6 100107650 100107716 -49409321 + ID4 SINE ID 1 71 -12 2 1348 300 27 0 0 chr6 100107716 100107753 -49409284 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1348 449 243 25 43 chr6 100107753 100107895 -49409142 + L1MB5 LINE L1 5874 6023 -151 2 1348 738 53 289 0 chr6 100107907 100108021 -49409016 + B1_Mus1 SINE Alu 2 148 0 2 1348 204 40 0 0 chr6 100108075 100108100 -49408937 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1348 292 294 12 12 chr6 100108252 100108338 -49408699 + MTEa LTR MaLR 288 373 -6 2 1348 269 196 26 105 chr6 100108489 100108603 -49408434 + RSINE1 SINE B4 61 165 0 2 1348 393 316 75 85 chr6 100109837 100110142 -49406895 + B4 SINE B4 6 272 -20 2 1348 342 0 0 0 chr6 100110154 100110192 -49406845 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1348 324 0 0 0 chr6 100110192 100110227 -49406810 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1348 378 0 0 0 chr6 100110272 100110314 -49406723 + (GTTTG)n Simple_repeat Simple_repeat 2 43 0 2 1348 522 273 0 8 chr6 100110318 100110440 -49406597 - B1_Mur2 SINE Alu -7 142 22 2 1348 247 295 116 0 chr6 100110797 100110892 -49406145 - Cheshire DNA MER1_type -2140 280 175 2 1348 224 91 0 22 chr6 100111073 100111118 -49405919 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 2 1348 1034 61 0 0 chr6 100111119 100111251 -49405786 - B1_Mm SINE Alu -2 145 14 2 1348 236 311 24 39 chr6 100111999 100112131 -49404906 - MIR SINE MIR -34 234 107 2 1348 215 304 0 52 chr6 100112417 100112514 -49404523 + GA-rich Low_complexity Low_complexity 2 93 0 2 1348 234 404 41 41 chr6 100113975 100114267 -49402770 + L2b LINE L2 3084 3375 0 2 1348 1692 31 0 0 chr6 100114856 100115049 -49401988 + B2_Mm1t SINE B2 1 193 0 2 1348 456 245 57 0 chr6 100115303 100115409 -49401628 - PB1D10 SINE Alu 0 117 6 2 1348 235 154 0 0 chr6 100115508 100115547 -49401490 + MT2A LTR ERVL 488 526 -7 2 1348 237 333 66 7 chr6 100115625 100115761 -49401276 + MER117 DNA MER1_type 18 161 -36 2 1348 585 296 126 10 chr6 100117162 100117360 -49399677 + ID_B1 SINE B4 2 222 -2 2 1348 387 0 0 0 chr6 100118215 100118258 -49398779 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1348 1047 246 18 57 chr6 100118259 100118539 -49398498 - B4A SINE B4 -22 270 2 2 1348 230 333 27 0 chr6 100118850 100118925 -49398112 - LTR16E1 LTR ERVL -233 305 229 2 1348 1430 40 68 0 chr6 100118948 100119124 -49397913 + B2_Mm1a SINE B2 1 188 -5 2 1348 718 272 10 44 chr6 100119124 100119328 -49397709 - B3A SINE B2 -1 197 1 2 1348 819 226 36 36 chr6 100119762 100119924 -49397113 + ID_B1 SINE B4 6 172 -52 2 1348 2347 158 86 29 chr6 100119924 100120379 -49396658 + RLTR28B LTR ERVL 1 481 0 2 1348 819 226 36 36 chr6 100120379 100120409 -49396628 + ID_B1 SINE B4 173 198 -26 2 1348 313 312 46 23 chr6 100120482 100120613 -49396424 + MIRb SINE MIR 107 240 -28 2 1348 255 125 42 0 chr6 100121974 100122046 -49394991 + (GTTTG)n Simple_repeat Simple_repeat 5 79 0 2 1348 820 246 97 15 chr6 100122081 100122287 -49394750 - ID_B1 SINE B4 0 224 2 2 1348 549 0 0 0 chr6 100123252 100123313 -49393724 + (CACAG)n Simple_repeat Simple_repeat 1 61 0 2 1348 182 180 40 0 chr6 100123484 100123534 -49393503 + (TATG)n Simple_repeat Simple_repeat 2 53 0 2 1348 859 211 131 5 chr6 100123606 100123797 -49393240 - B3 SINE B2 0 216 2 2 1348 956 257 26 4 chr6 100123797 100124020 -49393017 - B4A SINE B4 -62 230 3 2 1348 462 322 116 29 chr6 100124297 100124572 -49392465 + Charlie4a DNA MER1_type 18 316 -192 2 1348 931 237 56 9 chr6 100124642 100124855 -49392182 - ID_B1 SINE B4 0 224 2 2 1348 196 308 44 118 chr6 100125072 100125208 -49391829 - MER5B DNA MER1_type -36 142 17 2 1348 1616 151 26 103 chr6 100125935 100126283 -49390754 - ORR1A4 LTR MaLR -8 321 1 2 1348 270 167 44 29 chr6 100126283 100126349 -49390688 + MTEb LTR MaLR 46 112 -267 2 1348 1407 143 107 7 chr6 100126350 100126650 -49390387 + ORR1B1 LTR MaLR 1 389 -5 2 1348 486 181 0 0 chr6 100126750 100126855 -49390182 + (TG)n Simple_repeat Simple_repeat 1 105 0 2 1348 367 136 0 0 chr6 100126869 100126928 -49390109 - HAL1-3A_ME LINE L1 -840 2018 1960 2 1348 22 0 0 0 chr6 100127429 100127451 -49389586 + AT_rich Low_complexity Low_complexity 1 22 0 2 1348 494 289 63 0 chr6 100127891 100128033 -49389004 + ORR1E LTR MaLR 1 151 -208 2 1348 668 230 157 0 chr6 100128290 100128468 -49388569 + ID_B1 SINE B4 3 208 -16 2 1348 345 265 19 48 chr6 100129190 100129293 -49387744 + MER5A DNA MER1_type 86 185 -4 2 1348 490 208 0 10 chr6 100130509 100130611 -49386426 + B1_Mur3 SINE Alu 25 125 -24 2 1348 258 326 11 0 chr6 100131050 100131142 -49385895 - Charlie15a DNA MER1_type -20 204 112 2 1348 231 320 120 11 chr6 100131931 100132114 -49384923 + L2c LINE L2 3018 3220 -167 2 1348 558 316 62 100 chr6 100132318 100132687 -49384350 - ORR1E LTR MaLR -4 355 1 2 1348 1032 231 14 0 chr6 100133023 100133239 -49383798 + ID_B1 SINE B4 6 224 0 2 1348 248 347 77 12 chr6 100133118 100133287 -49383750 - YREP_Mm Unknown Unknown -1516 296 117 2 1348 247 301 63 21 chr6 100133840 100133935 -49383102 + MIRb SINE MIR 40 138 -130 2 1348 191 315 55 0 chr6 100134185 100134258 -49382779 - MIRm SINE MIR -128 148 72 2 1348 261 312 84 34 chr6 100134328 100134507 -49382530 + Charlie5 DNA MER1_type 1 188 -2436 2 1348 661 295 128 8 chr6 100134650 100134893 -49382144 + B4A SINE B4 3 274 -18 2 1348 483 100 0 0 chr6 100134897 100134967 -49382070 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1348 1071 249 74 4 chr6 100135110 100135195 -49381842 - B4A SINE B4 0 292 207 2 1348 261 0 0 0 chr6 100135195 100135224 -49381813 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1348 1071 249 74 4 chr6 100135224 100135408 -49381629 - B4A SINE B4 -86 206 6 2 1348 288 0 0 0 chr6 100136211 100136243 -49380794 + (CCA)n Simple_repeat Simple_repeat 2 33 0 2 1348 365 294 13 20 chr6 100136963 100137089 -49379948 + B1F SINE Alu 7 130 -19 2 1348 546 290 94 31 chr6 100137404 100137692 -49379345 + L1MB8 LINE L1 5862 6167 -11 2 1348 243 290 109 27 chr6 100137876 100137986 -49379051 + MIR SINE MIR 8 126 -136 2 1349 1437 227 71 33 chr6 100140837 100141201 -49375836 - MTEb LTR MaLR 0 379 2 2 1349 180 111 0 0 chr6 100141632 100141659 -49375378 + (TGG)n Simple_repeat Simple_repeat 2 28 0 2 1349 880 182 41 0 chr6 100141661 100141831 -49375206 + RLTR41 LTR ERV1 1 177 -269 3 1349 982 130 74 0 chr6 100141846 100142008 -49375029 + RLTR41 LTR ERV1 143 316 -130 3 1349 236 30 30 0 chr6 100142115 100142148 -49374889 + (TGG)n Simple_repeat Simple_repeat 1 34 0 3 1349 334 335 108 64 chr6 100142181 100142430 -49374607 - B4A SINE B4 -12 280 21 3 1349 217 357 108 0 chr6 100142960 100143089 -49373948 + MER5B DNA MER1_type 4 146 -32 3 1349 181 278 0 100 chr6 100143259 100143319 -49373718 - L2 LINE L2 -2120 1299 1246 3 1349 1257 283 76 32 chr6 100143588 100144059 -49372978 - RMER5 LTR ERV1 -28 506 15 3 1349 253 330 32 21 chr6 100144251 100144344 -49372693 + MLT1G3 LTR MaLR 196 289 -306 3 1349 216 244 77 0 chr6 100144381 100144459 -49372578 + PB1D10 SINE Alu 32 115 -2 3 1349 267 333 0 25 chr6 100144493 100144573 -49372464 + B4 SINE B4 10 87 -205 3 1349 261 184 31 16 chr6 100144798 100144862 -49372175 + PB1D10 SINE Alu 64 125 -2 3 1349 213 185 46 0 chr6 100144864 100144929 -49372108 + GA-rich Low_complexity Low_complexity 5 72 0 3 1349 195 100 0 0 chr6 100145761 100145791 -49371246 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 3 1349 383 247 0 21 chr6 100146518 100146613 -49370424 - PB1D10 SINE Alu -2 115 23 3 1349 547 289 46 0 chr6 100146712 100146864 -49370173 + MIRc SINE MIR 23 181 -87 3 1349 180 0 0 0 chr6 100148256 100148276 -49368761 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1349 252 0 0 0 chr6 100149249 100149277 -49367760 + (TC)n Simple_repeat Simple_repeat 1 28 0 3 1349 267 203 0 0 chr6 100149277 100149336 -49367701 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1349 489 62 0 0 chr6 100149577 100149642 -49367395 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1349 566 385 22 0 chr6 100149767 100149998 -49367039 - MLT1A0 LTR MaLR -2 363 128 3 1349 557 200 38 0 chr6 100150030 100150135 -49366902 + ID_B1 SINE B4 105 213 -11 3 1349 181 333 160 9 chr6 100150985 100151091 -49365946 - L2a LINE L2 0 3426 3305 3 1349 497 239 35 0 chr6 100151121 100151234 -49365803 + PB1D10 SINE Alu 1 117 0 3 1349 646 87 19 0 chr6 100151234 100151337 -49365700 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 3 1349 481 222 23 86 chr6 100151345 100151473 -49365564 + RSINE1 SINE B4 2 121 -44 3 1349 341 298 0 12 chr6 100151753 100151838 -49365199 + B1F SINE Alu 1 84 -65 3 1349 296 372 51 44 chr6 100151883 100152198 -49364839 - L2a LINE L2 -362 3057 2741 3 1349 273 315 139 53 chr6 100152386 100152537 -49364500 - MLT1A1 LTR MaLR 0 408 245 3 1349 827 141 14 75 chr6 100152540 100152686 -49364351 + B1_Mur3 SINE Alu 2 138 -11 3 1349 411 231 20 13 chr6 100152686 100152835 -49364202 + GA-rich Low_complexity Low_complexity 2 151 0 3 1349 2251 125 75 22 chr6 100152958 100153358 -49363679 + RMER15 LTR ERVL 1 421 -154 3 1349 257 83 0 0 chr6 100153386 100153422 -49363615 + RMER15 LTR ERVL 538 573 -2 3 1349 252 312 39 61 chr6 100153683 100153864 -49363173 - MLT1H2 LTR MaLR -58 431 255 3 1349 242 234 35 58 chr6 100154032 100154118 -49362919 + MIR SINE MIR 110 193 -69 3 1349 264 143 59 12 chr6 100154176 100154261 -49362776 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 1349 233 197 16 0 chr6 100155057 100155118 -49361919 + (TCCA)n Simple_repeat Simple_repeat 1 62 0 3 1349 987 175 160 0 chr6 100155174 100155368 -49361669 + URR1B DNA MER1_type 1 225 0 3 1349 203 326 43 21 chr6 100156079 100156173 -49360864 + MIRb SINE MIR 91 186 -82 3 1349 282 346 53 0 chr6 100156418 100156551 -49360486 + MER5A DNA MER1_type 43 182 -7 3 1349 208 196 0 25 chr6 100157343 100157392 -49359645 - MIRm SINE MIR -124 152 104 3 1349 271 271 8 86 chr6 100157402 100157519 -49359518 + PB1 SINE Alu 2 109 -18 3 1349 241 264 95 27 chr6 100157536 100157610 -49359427 + ID4_ SINE ID 2 80 -3 3 1349 378 0 0 0 chr6 100157769 100157811 -49359226 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1349 180 111 0 0 chr6 100157811 100157837 -49359200 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1349 2470 131 60 15 chr6 100158978 100159381 -49357656 - MTC LTR MaLR 0 421 1 3 1349 855 94 0 0 chr6 100160204 100160331 -49356706 + (TTCC)n Simple_repeat Simple_repeat 4 130 0 3 1349 218 167 148 16 chr6 100160403 100160464 -49356573 - PB1D10 SINE Alu -1 116 48 3 1349 279 0 0 0 chr6 100160649 100160680 -49356357 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1349 263 266 22 42 chr6 100161736 100161862 -49355175 - MIRc SINE MIR -58 150 35 3 1349 502 297 25 54 chr6 100161942 100162145 -49354892 + MLT1B LTR MaLR 5 201 -189 3 1349 958 129 7 39 chr6 100162330 100162483 -49354554 + B1_Mur2 SINE Alu 1 148 -1 3 1349 195 139 0 0 chr6 100164068 100164104 -49352933 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1349 240 338 0 34 chr6 100164699 100164846 -49352191 + G-rich Low_complexity Low_complexity 1 142 0 3 1349 233 218 0 18 chr6 100164974 100165030 -49352007 + G-rich Low_complexity Low_complexity 3 57 0 3 1349 213 255 0 0 chr6 100167436 100167483 -49349554 + RSINE1 SINE B4 10 56 -109 3 1349 333 0 0 0 chr6 100167522 100167559 -49349478 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1349 627 81 0 0 chr6 100168367 100168453 -49348584 + (ACTG)n Simple_repeat Simple_repeat 2 87 0 3 1349 789 223 203 13 chr6 100169678 100169978 -49347059 - MTEb LTR MaLR -8 371 15 3 1349 418 256 44 58 chr6 100170146 100170283 -49346754 + ID_B1 SINE B4 88 222 -2 3 1349 302 282 9 0 chr6 100170859 100170969 -49346068 + B1F SINE Alu 17 127 -22 3 1349 227 279 0 32 chr6 100171028 100171091 -49345946 + B1F SINE Alu 74 134 -15 3 1349 531 267 8 106 chr6 100171491 100171726 -49345311 - B4 SINE B4 0 292 81 3 1349 781 271 88 45 chr6 100171734 100172132 -49344905 - L1M4 LINE L1 -1772 4374 3960 3 1349 954 154 0 19 chr6 100172214 100172373 -49344664 - B3 SINE B2 -59 157 2 3 1349 338 281 202 37 chr6 100172404 100172622 -49344415 + HAL1 LINE L1 100 353 -2154 3 1349 994 232 102 31 chr6 100172906 100173200 -49343837 - MTEb LTR MaLR -23 356 42 3 1349 21 0 0 0 chr6 100173208 100173229 -49343808 + AT_rich Low_complexity Low_complexity 1 21 0 3 1349 544 153 82 0 chr6 100173269 100173367 -49343670 - B3 SINE B2 -109 107 2 3 1349 242 245 0 0 chr6 100173367 100173413 -49343624 - MTEb LTR MaLR -331 48 3 3 1349 533 275 0 7 chr6 100173568 100173711 -49343326 - ID_B1 SINE B4 -4 220 79 3 1349 267 269 88 64 chr6 100173839 100174010 -49343027 + LTR48 LTR ERV1 613 787 0 3 1349 738 171 20 46 chr6 100174038 100174191 -49342846 - B1_Mur4 SINE Alu 0 150 2 3 1349 1408 68 21 5 chr6 100174614 100174805 -49342232 + B2_Mm2 SINE B2 2 195 0 3 1349 320 227 0 0 chr6 100175218 100175284 -49341753 + ID SINE ID 8 73 -151 3 1349 307 264 66 8 chr6 100175443 100175565 -49341472 + L1MA4A LINE L1 5818 5946 -357 3 1349 237 65 0 0 chr6 100175584 100175615 -49341422 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1349 390 329 36 0 chr6 100175719 100175859 -49341178 + Lx8 LINE L1 6970 7114 -359 3 1349 266 313 0 24 chr6 100177052 100177137 -49339900 + PB1D10 SINE Alu 1 83 -34 3 1349 27 29 0 0 chr6 100180022 100180056 -49336981 + AT_rich Low_complexity Low_complexity 1 34 0 3 1349 26 0 0 0 chr6 100181451 100181477 -49335560 + AT_rich Low_complexity Low_complexity 1 26 0 3 1349 30 0 0 0 chr6 100181672 100181702 -49335335 + AT_rich Low_complexity Low_complexity 1 30 0 3 1349 26 0 0 0 chr6 100181882 100181908 -49335129 + AT_rich Low_complexity Low_complexity 1 26 0 3 1349 1172 19 19 19 chr6 100182508 100182666 -49334371 + B2_Mm1a SINE B2 33 190 -3 3 1349 26 0 0 0 chr6 100183940 100183966 -49333071 + AT_rich Low_complexity Low_complexity 1 26 0 3 1349 252 86 0 0 chr6 100184001 100184036 -49333001 + (GGGGA)n Simple_repeat Simple_repeat 5 39 0 3 1349 537 94 65 9 chr6 100184359 100184466 -49332571 - URR1A DNA MER1_type -35 191 79 3 1349 227 232 0 51 chr6 100184842 100184901 -49332136 + ID SINE ID 30 85 -139 3 1349 34 79 0 0 chr6 100186278 100186354 -49330683 + AT_rich Low_complexity Low_complexity 1 76 0 3 1349 892 131 58 0 chr6 100186832 100186969 -49330068 + B1_Mus1 SINE Alu 4 148 0 3 1349 400 153 160 20 chr6 100187069 100187169 -49329868 + B1_Mur4 SINE Alu 30 143 -7 3 1349 419 221 144 0 chr6 100188142 100188246 -49328791 + B1_Mus2 SINE Alu 28 146 -1 3 1349 552 264 18 72 chr6 100188708 100188875 -49328162 - RSINE1 SINE B4 -3 162 5 3 1349 406 275 106 40 chr6 100191230 100191503 -49325534 - L1MC4a LINE L1 -23 7859 7569 3 1349 270 184 0 0 chr6 100191552 100191601 -49325436 + B3A SINE B2 1 49 -149 3 1349 1404 85 16 11 chr6 100191701 100191891 -49325146 - B2_Mm2 SINE B2 -4 191 1 3 1349 24 0 0 0 chr6 100191891 100191915 -49325122 + AT_rich Low_complexity Low_complexity 1 24 0 3 1349 1000 51 68 55 chr6 100191925 100192071 -49324966 + B1_Mus1 SINE Alu 1 148 0 3 1349 216 75 17 102 chr6 100192072 100192131 -49324906 + A-rich Low_complexity Low_complexity 4 57 0 3 1349 579 275 130 44 chr6 100193057 100193327 -49323710 - L1M5 LINE L1 -729 5715 5423 3 1349 568 254 142 11 chr6 100193562 100193745 -49323292 - B4A SINE B4 -4 288 82 3 1349 381 146 33 89 chr6 100193850 100193940 -49323097 + B1_Mur3 SINE Alu 2 86 -34 3 1349 252 0 0 0 chr6 100194141 100194169 -49322868 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1349 225 336 20 123 chr6 100194650 100194796 -49322241 + B1F1 SINE Alu 18 148 -1 3 1349 28 29 0 0 chr6 100195202 100195237 -49321800 + AT_rich Low_complexity Low_complexity 1 35 0 3 1349 1279 58 117 0 chr6 100195384 100195531 -49321506 + B2_Mm2 SINE B2 2 148 -47 4 1349 195 100 0 0 chr6 100195531 100195561 -49321476 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1349 1279 58 117 0 chr6 100195561 100195584 -49321453 + B2_Mm2 SINE B2 149 190 -5 4 1349 502 206 0 32 chr6 100195870 100195965 -49321072 - B1_Mur3 SINE Alu -57 92 1 4 1349 273 219 10 172 chr6 100195879 100195978 -49321059 - MT2B LTR ERVL -363 238 156 4 1349 475 266 8 31 chr6 100196552 100196680 -49320357 - B3A SINE B2 -27 171 47 4 1349 1043 68 0 104 chr6 100196803 100196967 -49320070 - B1_Mus2 SINE Alu 0 147 1 4 1349 282 300 29 50 chr6 100197095 100197198 -49319839 + PB1D10 SINE Alu 12 112 -37 4 1349 226 284 83 10 chr6 100198821 100198917 -49318120 + PB1D7 SINE Alu 4 106 -14 4 1349 268 210 17 70 chr6 100198917 100198993 -49318044 + B1F1 SINE Alu 32 142 -7 4 1349 225 281 0 0 chr6 100199068 100199132 -49317905 + MER44B DNA MER2_type 54 117 -433 4 1349 432 62 0 15 chr6 100202312 100202377 -49314660 + B1_Mus1 SINE Alu 2 65 -83 4 1349 464 219 94 26 chr6 100202435 100202552 -49314485 + RSINE1 SINE B4 1 125 -40 4 1349 198 0 0 0 chr6 100202949 100202971 -49314066 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 4 1349 331 313 0 20 chr6 100203177 100203278 -49313759 - PB1D10 SINE Alu -16 101 3 4 1349 686 101 242 8 chr6 100204340 100204460 -49312577 - B1_Mus1 SINE Alu 0 148 1 4 1349 577 232 90 63 chr6 100205232 100205421 -49311616 + B3 SINE B2 9 202 -14 4 1349 234 346 139 57 chr6 100205480 100205725 -49311312 + B4A SINE B4 26 290 -2 4 1349 1017 86 21 0 chr6 100206708 100206848 -49310189 - B1_Mus1 SINE Alu -5 143 1 4 1349 1142 122 27 22 chr6 100207228 100207413 -49309624 - B2_Mm2 SINE B2 -8 187 2 4 1349 23 68 0 0 chr6 100207684 100207728 -49309309 + AT_rich Low_complexity Low_complexity 1 44 0 4 1349 348 203 0 80 chr6 100207845 100207920 -49309117 - B3A SINE B2 -127 71 3 4 1349 241 194 104 0 chr6 100208974 100209041 -49307996 + ORR1E LTR MaLR 1 74 -285 4 1349 210 37 0 0 chr6 100209142 100209169 -49307868 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1349 442 267 58 22 chr6 100209250 100209388 -49307649 - MLT1A0 LTR MaLR -3 362 220 4 1349 446 264 174 54 chr6 100209630 100210186 -49306851 + L1MB7 LINE L1 5256 5881 -303 4 1349 538 252 54 34 chr6 100210612 100210760 -49306277 + RSINE1 SINE B4 4 154 -11 4 1349 285 29 0 0 chr6 100211188 100211222 -49305815 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1349 422 259 0 34 chr6 100212466 100212563 -49304474 + PB1D10 SINE Alu 9 103 -46 4 1349 1662 31 5 0 chr6 100212988 100213179 -49303858 - B2_Mm1t SINE B2 0 193 2 4 1349 392 304 104 0 chr6 100213233 100213368 -49303669 + RSINE1 SINE B4 17 165 0 4 1349 915 221 143 32 chr6 100214409 100214689 -49302348 - ORR1D1 LTR MaLR -46 328 18 4 1349 765 83 0 9 chr6 100214780 100214890 -49302147 + B1_Mus1 SINE Alu 2 110 -38 4 1349 646 212 80 0 chr6 100214931 100215068 -49301969 + B1_Mur2 SINE Alu 1 148 -1 4 1349 1268 75 63 0 chr6 100215219 100215393 -49301644 + B2_Mm1t SINE B2 2 186 -7 4 1349 441 265 57 44 chr6 100215448 100215677 -49301360 + L1MB7 LINE L1 5625 5856 -328 4 1349 1260 25 0 30 chr6 100215712 100215876 -49301161 - L1Md_F2 LINE L1 -1 6581 6423 4 1349 711 196 65 0 chr6 100215924 100216062 -49300975 + B1_Mus1 SINE Alu 2 148 0 4 1349 616 59 154 41 chr6 100216065 100216188 -49300849 + B2_Mm2 SINE B2 53 189 -6 4 1349 239 288 14 14 chr6 100216217 100216291 -49300746 + B3 SINE B2 57 130 -86 4 1349 21 36 0 0 chr6 100216340 100216368 -49300669 + AT_rich Low_complexity Low_complexity 1 28 0 4 1349 299 264 103 0 chr6 100216748 100216835 -49300202 + ID_B1 SINE B4 66 161 -63 4 1349 346 292 91 71 chr6 100216835 100217089 -49299948 + L1M5 LINE L1 4497 4755 -1391 4 1349 264 250 0 0 chr6 100217238 100217298 -49299739 + B1F SINE Alu 73 132 -17 4 1349 1012 121 18 29 chr6 100217407 100217578 -49299459 + B2_Mm1t SINE B2 3 171 -22 4 1349 331 91 342 9 chr6 100217639 100217747 -49299290 + B2_Mm2 SINE B2 46 189 -6 4 1349 1128 62 28 0 chr6 100218002 100218146 -49298891 + B1_Mur4 SINE Alu 1 148 -2 4 1349 236 215 29 44 chr6 100218306 100218374 -49298663 + PB1D10 SINE Alu 15 81 -36 4 1349 3481 15 8 10 chr6 100218395 100218792 -49298245 + MTA_Mm LTR MaLR 1 396 0 4 1349 435 204 113 8 chr6 100219378 100219511 -49297526 + B1_Mus2 SINE Alu 1 147 0 4 1349 421 235 28 38 chr6 100219660 100219766 -49297271 - B1F1 SINE Alu -39 110 6 4 1349 293 231 0 84 chr6 100219711 100219782 -49297255 - B4A SINE B4 -147 145 81 4 1349 221 75 25 0 chr6 100219985 100220025 -49297012 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1349 252 86 0 0 chr6 100220349 100220384 -49296653 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 4 1349 602 183 60 15 chr6 100221197 100221330 -49295707 - B1_Mur2 SINE Alu 0 149 11 4 1349 504 244 32 40 chr6 100222919 100223043 -49293994 - B3 SINE B2 0 216 94 4 1349 1720 5 11 0 chr6 100223320 100223510 -49293527 - B2_Mm1a SINE B2 -1 192 1 4 1349 922 91 13 89 chr6 100223743 100223900 -49293137 + B1_Mus1 SINE Alu 4 148 0 4 1349 551 253 66 33 chr6 100224010 100224161 -49292876 + B3A SINE B2 17 172 -26 4 1349 21 71 0 0 chr6 100224161 100224203 -49292834 + AT_rich Low_complexity Low_complexity 1 42 0 4 1349 471 215 119 30 chr6 100224235 100224369 -49292668 + B1_Mus2 SINE Alu 1 146 -1 4 1349 1248 226 117 16 chr6 100224385 100224762 -49292275 + RCHARR1 DNA MER1_type 503 917 -57 4 1349 305 287 92 9 chr6 100224799 100224908 -49292129 + MER5A DNA MER1_type 69 186 -3 4 1349 590 144 20 10 chr6 100225340 100225438 -49291599 - PB1D9 SINE Alu -13 107 9 4 1349 264 277 60 60 chr6 100225507 100225607 -49291430 + B3 SINE B2 2 101 -115 4 1349 410 212 222 0 chr6 100227271 100227370 -49289667 + B1_Mus1 SINE Alu 5 125 -23 4 1349 814 159 210 0 chr6 100227394 100227570 -49289467 + B3 SINE B2 3 215 -1 4 1349 279 192 73 49 chr6 100227653 100227735 -49289302 + RLTR25B LTR ERVK 426 509 -519 4 1349 662 114 0 28 chr6 100227673 100227769 -49289268 + B1_Mus2 SINE Alu 43 138 -9 4 1349 342 0 0 0 chr6 100227769 100227807 -49289230 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1349 662 114 0 28 chr6 100227807 100227818 -49289219 + B1_Mus2 SINE Alu 139 147 0 4 1349 265 189 38 0 chr6 100228241 100228294 -49288743 + ID SINE ID 2 56 -168 4 1349 244 231 123 0 chr6 100228294 100228306 -49288731 + ID2 SINE ID 2 74 -9 4 1349 269 304 8 108 chr6 100228674 100228803 -49288234 + PB1D10 SINE Alu 2 117 0 4 1349 1160 219 71 8 chr6 100228907 100229200 -49287837 + RMER1B Other Other 234 636 -430 4 1349 1166 103 103 0 chr6 100229238 100229413 -49287624 + B2_Mm2 SINE B2 2 194 -1 4 1349 218 328 124 34 chr6 100230304 100230481 -49286556 + L2b LINE L2 3225 3420 -6 4 1349 1073 103 0 14 chr6 100231115 100231263 -49285774 + B1_Mus2 SINE Alu 2 147 0 4 1349 319 266 35 99 chr6 100232050 100232192 -49284845 + L1MB8 LINE L1 6046 6178 0 4 1349 672 231 78 34 chr6 100232217 100232396 -49284641 + B3A SINE B2 3 189 -9 4 1349 1193 141 22 0 chr6 100232416 100232600 -49284437 + B2_Mm2 SINE B2 1 188 -7 4 1349 368 278 131 31 chr6 100232660 100232790 -49284247 + B1F1 SINE Alu 2 144 -5 4 1349 1329 82 49 0 chr6 100233046 100233230 -49283807 + B2_Mm2 SINE B2 3 195 0 4 1349 988 179 171 26 chr6 100233973 100234242 -49282795 + Lx5 LINE L1 6743 7050 0 4 1349 25 31 0 0 chr6 100235140 100235172 -49281865 + AT_rich Low_complexity Low_complexity 1 32 0 4 1349 293 279 160 19 chr6 100235207 100235313 -49281724 + PB1D10 SINE Alu 28 148 -1 4 1349 189 0 0 0 chr6 100236320 100236341 -49280696 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1349 21 100 0 0 chr6 100236761 100236831 -49280206 + GC_rich Low_complexity Low_complexity 1 70 0 4 1349 200 202 18 55 chr6 100236856 100236966 -49280071 + (CGCGG)n Simple_repeat Simple_repeat 2 107 0 4 1349 21 0 0 0 chr6 100237185 100237206 -49279831 + GC_rich Low_complexity Low_complexity 1 21 0 4 1349 27 29 0 0 chr6 100237348 100237382 -49279655 + GC_rich Low_complexity Low_complexity 1 34 0 4 1349 249 33 0 0 chr6 100237405 100237435 -49279602 + (CCG)n Simple_repeat Simple_repeat 2 31 0 4 1349 23 0 0 0 chr6 100237490 100237513 -49279524 + GC_rich Low_complexity Low_complexity 1 23 0 4 1349 221 120 39 39 chr6 100237557 100237667 -49279370 + (CGGGG)n Simple_repeat Simple_repeat 1 110 0 4 1349 23 0 0 0 chr6 100238869 100238892 -49278145 + AT_rich Low_complexity Low_complexity 1 23 0 4 1349 273 263 0 38 chr6 100238936 100239015 -49278022 + BC1_Mm scRNA scRNA 28 103 -49 4 1349 255 301 55 89 chr6 100239804 100239823 -49277214 + B4 SINE B4 74 214 -78 4 1349 489 252 55 0 chr6 100239823 100239950 -49277087 + B1_Mur1 SINE Alu 4 137 -12 4 1349 585 52 0 0 chr6 100239950 100240027 -49277010 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 4 1349 1030 181 62 10 chr6 100240331 100240526 -49276511 - B3 SINE B2 -6 210 6 4 1349 416 236 57 0 chr6 100240644 100240750 -49276287 - PB1D10 SINE Alu -5 112 1 4 1349 203 171 0 0 chr6 100241451 100241492 -49275545 + A-rich Low_complexity Low_complexity 1 41 0 4 1349 469 247 41 128 chr6 100241512 100241541 -49275496 + B4 SINE B4 69 223 -67 5 1349 876 158 14 14 chr6 100241541 100241682 -49275355 + B1_Mur2 SINE Alu 7 147 -2 5 1349 806 257 32 14 chr6 100241782 100241999 -49275038 + ID_B1 SINE B4 1 221 -3 5 1349 456 325 0 38 chr6 100242044 100242175 -49274862 + ID_B1 SINE B4 1 126 -98 5 1349 273 29 0 0 chr6 100242182 100242216 -49274821 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1349 1607 281 71 15 chr6 100242301 100242908 -49274129 + L1ME1 LINE L1 5310 5950 -229 5 1349 377 321 94 67 chr6 100243746 100244013 -49273024 + B4 SINE B4 2 275 -17 5 1349 223 264 0 27 chr6 100244030 100244104 -49272933 + CT-rich Low_complexity Low_complexity 1 72 0 5 1349 537 58 0 0 chr6 100244298 100244367 -49272670 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 5 1349 1211 55 0 0 chr6 100244367 100244513 -49272524 - B1_Mus2 SINE Alu -1 146 1 5 1349 767 176 7 7 chr6 100244695 100244838 -49272199 + B1_Mus1 SINE Alu 5 147 -1 5 1349 1390 52 6 17 chr6 100244843 100245003 -49272034 + B2_Mm2 SINE B2 2 161 -34 5 1349 306 0 0 0 chr6 100245003 100245037 -49272000 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 5 1349 1390 52 6 17 chr6 100245037 100245053 -49271984 + B2_Mm2 SINE B2 162 176 -19 5 1349 189 0 0 0 chr6 100245062 100245083 -49271954 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 1349 930 176 0 0 chr6 100245085 100245233 -49271804 + B1_Mur3 SINE Alu 1 148 -1 5 1349 386 306 43 43 chr6 100245831 100245971 -49271066 + RSINE1 SINE B4 3 142 -23 5 1349 306 50 0 0 chr6 100245989 100246029 -49271008 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1349 228 275 286 0 chr6 100246058 100246149 -49270888 + PB1D10 SINE Alu 1 117 0 5 1349 327 309 8 31 chr6 100246155 100246282 -49270755 + GA-rich Low_complexity Low_complexity 3 126 0 5 1349 497 296 97 51 chr6 100246305 100246522 -49270515 + MLT1B LTR MaLR 164 390 0 5 1349 468 340 0 0 chr6 100246701 100246863 -49270174 - RSINE1 SINE B4 -2 163 2 5 1349 421 330 78 29 chr6 100246879 100246947 -49270090 - B3 SINE B2 0 216 146 5 1349 384 22 0 0 chr6 100246947 100246992 -49270045 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1349 421 330 78 29 chr6 100246992 100247129 -49269908 - B3 SINE B2 -71 145 2 5 1349 463 208 36 36 chr6 100247181 100247291 -49269746 + PB1D9 SINE Alu 11 120 0 5 1349 428 98 48 19 chr6 100247295 100247399 -49269638 + GA-rich Low_complexity Low_complexity 1 107 0 5 1349 291 272 0 36 chr6 100247451 100247535 -49269502 - MIRb SINE MIR -64 204 124 5 1349 400 316 37 37 chr6 100247886 100248017 -49269020 + RSINE1 SINE B4 2 130 -35 5 1349 399 41 0 0 chr6 100248017 100248066 -49268971 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1349 400 316 37 37 chr6 100248066 100248095 -49268942 + RSINE1 SINE B4 131 162 -3 5 1349 202 270 0 16 chr6 100248682 100248746 -49268291 + G-rich Low_complexity Low_complexity 5 67 0 5 1349 219 36 0 0 chr6 100249394 100249422 -49267615 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1349 363 23 0 0 chr6 100249749 100249793 -49267244 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1349 504 342 70 0 chr6 100250847 100251034 -49266003 + ID_B1 SINE B4 1 200 -24 5 1349 293 154 0 44 chr6 100251050 100251118 -49265919 + G-rich Low_complexity Low_complexity 4 68 0 5 1349 816 241 18 6 chr6 100252648 100252811 -49264226 + ID_B1 SINE B4 8 172 -52 5 1349 2268 141 66 24 chr6 100252928 100253306 -49263731 + ORR1B1 LTR MaLR 1 394 0 5 1349 526 232 194 28 chr6 100253726 100253974 -49263063 + B4A SINE B4 1 289 -3 5 1349 454 231 28 121 chr6 100254280 100254462 -49262575 + RSINE1 SINE B4 1 165 0 5 1349 255 283 0 0 chr6 100254534 100254587 -49262450 + B1F SINE Alu 15 67 -82 5 1349 227 250 19 37 chr6 100254614 100254668 -49262369 + B4 SINE B4 33 85 -207 5 1349 822 206 0 0 chr6 100254673 100254819 -49262218 + B1_Mus2 SINE Alu 2 147 0 5 1349 828 168 7 27 chr6 100254850 100254997 -49262040 + B1_Mus2 SINE Alu 3 146 -1 5 1349 673 248 76 76 chr6 100254998 100255208 -49261829 + B4 SINE B4 83 292 0 5 1349 351 0 0 0 chr6 100255221 100255260 -49261777 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1349 244 276 131 10 chr6 100255311 100255410 -49261627 + PB1D7 SINE Alu 2 112 -8 5 1349 395 123 0 0 chr6 100255421 100255478 -49261559 + ID4 SINE ID 15 71 -12 5 1349 372 378 52 16 chr6 100255825 100256016 -49261021 - MLT1L LTR MaLR -107 503 306 5 1349 268 191 87 14 chr6 100256216 100256285 -49260752 + B1F SINE Alu 13 86 -63 5 1349 490 269 49 108 chr6 100256225 100256322 -49260715 + MT2B LTR ERVL 72 156 -445 5 1349 702 180 64 7 chr6 100256322 100256462 -49260575 + B1_Mus2 SINE Alu 1 148 -1 5 1349 513 263 60 8 chr6 100256485 100256619 -49260418 + ID_B1 SINE B4 78 218 -6 5 1349 546 282 65 39 chr6 100256634 100256789 -49260248 + RSINE1 SINE B4 3 161 -4 5 1349 234 282 105 84 chr6 100256789 100256824 -49260213 + B2_Mm2 SINE B2 2 195 0 5 1349 234 191 0 0 chr6 100256901 100256948 -49260089 + GA-rich Low_complexity Low_complexity 1 47 0 5 1349 338 253 31 31 chr6 100257059 100257157 -49259880 - MIRb SINE MIR -46 222 125 5 1349 216 342 141 3 chr6 100257664 100257856 -49259181 - MIRb SINE MIR -7 261 35 5 1349 484 315 69 26 chr6 100258013 100258202 -49258835 + B3 SINE B2 6 202 -14 5 1349 914 118 73 0 chr6 100258479 100258615 -49258422 - B1_Mus2 SINE Alu -1 146 1 5 1349 302 232 10 132 chr6 100258848 100258866 -49258171 + MT2B LTR ERVL 152 193 -391 5 1349 425 228 0 0 chr6 100258866 100258958 -49258079 + B1_Mus1 SINE Alu 2 93 -55 5 1349 302 232 10 132 chr6 100258958 100258991 -49258046 + MT2B LTR ERVL 194 279 -305 5 1349 237 290 48 0 chr6 100259662 100259724 -49257313 + MIRc SINE MIR 162 226 -42 5 1349 344 330 36 99 chr6 100259865 100260087 -49256950 + ID_B1 SINE B4 11 218 -6 5 1349 534 184 8 116 chr6 100259964 100260093 -49256944 + B1_Mus2 SINE Alu 34 148 0 5 1349 242 269 0 0 chr6 100260366 100260418 -49256619 + B1F1 SINE Alu 13 64 -85 5 1349 1230 78 0 0 chr6 100260863 100261030 -49256007 + (GAA)n Simple_repeat Simple_repeat 2 168 0 5 1349 729 325 78 76 chr6 100262192 100262439 -49254598 - MLT1E2 LTR MaLR 0 627 373 5 1349 1580 21 0 68 chr6 100262439 100262646 -49254391 - B2_Mm1a SINE B2 0 193 1 5 1349 729 325 78 76 chr6 100262646 100262935 -49254102 - MLT1E2 LTR MaLR -255 372 90 5 1349 1371 253 40 48 chr6 100262935 100263008 -49254029 + MTEa LTR MaLR 1 75 -304 5 1349 186 71 0 0 chr6 100263008 100263036 -49254001 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1349 1371 253 40 48 chr6 100263036 100263315 -49253722 + MTEa LTR MaLR 76 349 -30 5 1349 302 222 48 0 chr6 100263634 100263697 -49253340 - ID2 SINE ID -6 77 12 5 1349 436 314 28 14 chr6 100263776 100263918 -49253119 - RSINE1 SINE B4 -17 148 5 5 1349 264 289 60 0 chr6 100263925 100264008 -49253029 - L1M2 LINE L1 -715 5582 5495 5 1349 281 330 20 20 chr6 100264037 100264139 -49252898 - PB1D7 SINE Alu -5 115 14 5 1349 189 0 0 0 chr6 100264188 100264209 -49252828 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1349 375 244 0 24 chr6 100264213 100264297 -49252740 + ID4 SINE ID 2 83 0 5 1349 231 240 54 71 chr6 100264320 100264432 -49252605 - L1M2 LINE L1 -714 5457 5348 5 1349 763 203 7 7 chr6 100264660 100264799 -49252238 + B1_Mus2 SINE Alu 3 141 -6 5 1349 337 292 10 40 chr6 100264863 100264963 -49252074 + PB1D10 SINE Alu 15 111 -6 5 1349 215 269 220 25 chr6 100264963 100264981 -49252056 + B4 SINE B4 100 240 -52 5 1349 380 97 16 0 chr6 100265218 100265280 -49251757 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1349 933 62 0 0 chr6 100265280 100265409 -49251628 + (CA)n Simple_repeat Simple_repeat 2 130 0 5 1349 1239 147 47 87 chr6 100265429 100265727 -49251310 + RLTRETN_Mm LTR ERVK 29 314 -8 5 1349 423 0 0 0 chr6 100265727 100265774 -49251263 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1349 498 219 144 16 chr6 100265789 100265914 -49251123 + ID_B1 SINE B4 83 223 -1 5 1349 713 262 0 28 chr6 100266114 100266259 -49250778 + RSINE1 SINE B4 3 143 -22 5 1349 824 170 15 7 chr6 100266287 100266423 -49250614 - B1_Mur1 SINE Alu -3 146 10 5 1349 28 29 0 0 chr6 100266435 100266470 -49250567 + AT_rich Low_complexity Low_complexity 1 35 0 5 1349 436 247 48 72 chr6 100266485 100266651 -49250386 - L1MB5 LINE L1 -265 5909 5748 5 1349 279 355 9 26 chr6 100267141 100267254 -49249783 - PB1D7 SINE Alu -7 113 3 5 1349 222 180 0 0 chr6 100267256 100267317 -49249720 + (TCTCTG)n Simple_repeat Simple_repeat 2 62 0 5 1349 729 197 13 70 chr6 100267317 100267333 -49249704 - B1_Mur2 SINE Alu 0 149 138 5 1349 495 0 0 0 chr6 100267333 100267388 -49249649 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 5 1349 729 197 13 70 chr6 100267388 100267529 -49249508 - B1_Mur2 SINE Alu -12 137 1 5 1349 392 302 30 108 chr6 100267529 100267555 -49249482 - ID_B1 SINE B4 -12 212 59 5 1349 279 0 0 0 chr6 100267869 100267900 -49249137 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1349 252 0 0 0 chr6 100267900 100267927 -49249110 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1349 187 255 83 127 chr6 100268034 100268191 -49248846 + MER5B DNA MER1_type 27 176 -2 5 1349 284 336 36 36 chr6 100268659 100268770 -49248267 - MER5A1 DNA MER1_type 0 166 56 5 1349 386 375 35 0 chr6 100268799 100268943 -49248094 - RSINE1 SINE B4 -2 163 15 5 1349 209 219 24 0 chr6 100269762 100269803 -49247234 - MIRm SINE MIR -118 158 117 5 1349 590 99 11 0 chr6 100269918 100270009 -49247028 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 5 1349 320 250 16 0 chr6 100270011 100270075 -49246962 - PB1D10 SINE Alu -31 86 22 5 1350 431 258 64 2 chr6 100270195 100270302 -49246735 + PB1D7 SINE Alu 1 114 -6 5 1350 285 209 0 0 chr6 100270309 100270376 -49246661 + GA-rich Low_complexity Low_complexity 3 69 0 5 1350 1274 48 0 0 chr6 100270497 100270644 -49246393 - B1_Mus1 SINE Alu -1 147 1 6 1350 472 24 61 67 chr6 100270708 100270888 -49246149 + (CAGGG)n Simple_repeat Simple_repeat 2 180 0 6 1350 321 0 61 0 chr6 100271164 100271213 -49245824 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1350 281 247 13 25 chr6 100271481 100271560 -49245477 + L1ME4a LINE L1 5980 6057 -67 6 1350 621 267 99 6 chr6 100271675 100271837 -49245200 + ID_B1 SINE B4 36 212 -12 6 1350 411 315 53 38 chr6 100271897 100272116 -49244921 + MIRc SINE MIR 23 237 -25 6 1350 1576 265 86 5 chr6 100272174 100272602 -49244435 + MLT1F LTR MaLR 19 481 -67 6 1350 251 377 70 23 chr6 100272670 100272841 -49244196 + L3 LINE CR1 3237 3415 -1074 6 1350 303 389 7 7 chr6 100273108 100273248 -49243789 + MLT1A1 LTR MaLR 269 408 0 6 1350 1101 197 19 10 chr6 100274519 100274724 -49242313 + B3 SINE B2 4 210 -6 6 1350 948 92 39 0 chr6 100274792 100274922 -49242115 + B1_Mus2 SINE Alu 2 136 -11 6 1350 322 21 43 0 chr6 100274922 100274969 -49242068 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1350 465 235 76 25 chr6 100274980 100275098 -49241939 + B1F2 SINE Alu 5 128 -21 6 1350 278 169 15 0 chr6 100275098 100275163 -49241874 + GA-rich Low_complexity Low_complexity 1 66 0 6 1350 334 206 29 67 chr6 100275302 100275406 -49241631 - MIRb SINE MIR -73 195 96 6 1350 361 260 58 0 chr6 100275562 100275666 -49241371 - PB1 SINE Alu -17 110 1 6 1350 579 15 0 0 chr6 100275925 100275993 -49241044 + (TTC)n Simple_repeat Simple_repeat 1 68 0 6 1350 210 105 0 0 chr6 100275993 100276031 -49241006 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 6 1350 840 131 28 35 chr6 100276059 100276202 -49240835 - B1_Mus2 SINE Alu -5 142 1 6 1350 420 219 105 0 chr6 100276230 100276335 -49240702 - PB1D10 SINE Alu 0 117 2 6 1350 189 147 0 0 chr6 100276431 100276465 -49240572 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 6 1350 725 226 82 11 chr6 100276493 100276676 -49240361 + B3A SINE B2 3 198 0 6 1350 857 176 0 7 chr6 100276682 100276825 -49240212 + B1_Mur1 SINE Alu 1 142 -7 6 1350 1037 81 0 0 chr6 100276848 100276984 -49240053 + B1_Mus1 SINE Alu 2 137 -11 6 1350 216 0 0 0 chr6 100276984 100277008 -49240029 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1350 279 282 38 146 chr6 100277038 100277250 -49239787 - MLT1N2 LTR MaLR -21 541 353 6 1350 281 217 14 0 chr6 100277401 100277470 -49239567 - ID4_ SINE ID -12 71 2 6 1350 244 266 174 0 chr6 100277636 100277745 -49239292 + MER5A1 DNA MER1_type 26 153 -13 6 1350 838 55 0 9 chr6 100277744 100277854 -49239183 - B1_Mm SINE Alu -37 110 2 6 1350 819 228 141 0 chr6 100277994 100278178 -49238859 - B3 SINE B2 -6 210 1 6 1350 388 260 170 0 chr6 100278232 100278332 -49238705 - B3A SINE B2 -80 118 2 6 1350 302 319 72 31 chr6 100278342 100278439 -49238598 - RSINE1 SINE B4 -63 102 2 6 1350 1905 159 21 45 chr6 100278870 100279313 -49237724 + RMER17C LTR ERVK 25 441 -517 6 1350 229 291 0 0 chr6 100279452 100279507 -49237530 - ID SINE ID -169 55 1 6 1350 722 240 64 48 chr6 100280079 100280267 -49236770 - B3A SINE B2 -7 191 1 6 1350 26 0 0 0 chr6 100281998 100282024 -49235013 + AT_rich Low_complexity Low_complexity 1 26 0 6 1350 748 170 98 57 chr6 100282176 100282222 -49234815 - RMER10B LTR ERVL -3 395 341 6 1350 573 15 0 0 chr6 100282222 100282288 -49234749 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1350 1339 183 62 16 chr6 100282288 100282697 -49234340 - RMER10B LTR ERVL -46 396 5 6 1350 367 244 186 68 chr6 100282741 100283080 -49233957 - RMER17C-int LTR ERVK -83 3155 2777 6 1350 192 259 50 33 chr6 100283249 100283309 -49233728 - MIR SINE MIR -97 165 105 6 1350 305 276 13 0 chr6 100283328 100283404 -49233633 + ID4_ SINE ID 1 77 -6 6 1350 1980 163 188 8 chr6 100283738 100284116 -49232921 - RLTR41 LTR ERV1 0 446 1 6 1350 1178 182 60 36 chr6 100284470 100284726 -49232311 + ORR1C2 LTR MaLR 1 305 -79 6 1350 2212 126 86 0 chr6 100284727 100285077 -49231960 - ORR1B1 LTR MaLR -13 381 2 6 1350 391 208 0 14 chr6 100285084 100285157 -49231880 - ID4_ SINE ID -7 76 5 6 1350 262 239 22 36 chr6 100286009 100286098 -49230939 + LTR81B LTR ERV1? 180 264 -1129 6 1350 394 344 56 36 chr6 100286482 100286838 -49230199 + MamGypLTR2 LTR Gypsy 300 662 -527 6 1350 258 310 106 37 chr6 100286865 100287026 -49230011 - MER91A DNA Tip100 -13 183 12 6 1350 204 40 0 0 chr6 100287394 100287419 -49229618 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 6 1350 186 43 0 0 chr6 100287457 100287480 -49229557 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1350 1081 101 0 20 chr6 100287480 100287631 -49229406 - B1_Mus1 SINE Alu 0 148 1 6 1350 437 310 115 52 chr6 100288550 100288916 -49228121 - MLT1F LTR MaLR 0 548 115 6 1350 182 37 37 0 chr6 100288923 100288950 -49228087 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1350 868 167 0 0 chr6 100288950 100289086 -49227951 - B1_Mur4 SINE Alu -12 138 3 6 1350 284 336 110 97 chr6 100289086 100289176 -49227861 - MLT1F LTR MaLR -434 114 7 6 1350 666 266 0 7 chr6 100289442 100289586 -49227451 - ID_B1 SINE B4 0 224 82 6 1350 322 295 0 0 chr6 100290001 100290079 -49226958 + PB1D10 SINE Alu 5 82 -35 6 1350 1300 52 9 14 chr6 100290083 100290297 -49226740 + (TCTA)n Simple_repeat Simple_repeat 1 212 0 6 1350 616 260 74 20 chr6 100290323 100290472 -49226565 + ID_B1 SINE B4 4 160 -64 6 1350 626 188 11 28 chr6 100290473 100290654 -49226383 + CT-rich Low_complexity Low_complexity 3 180 0 6 1350 647 148 88 15 chr6 100290671 100290720 -49226317 - B2_Mm2 SINE B2 -2 193 142 6 1350 1172 68 7 0 chr6 100290720 100290866 -49226171 + B1_Mus2 SINE Alu 1 147 0 6 1350 647 148 88 15 chr6 100290866 100290953 -49226084 - B2_Mm2 SINE B2 -54 141 48 6 1350 1216 113 0 0 chr6 100290989 100291157 -49225880 - B2_Mm2 SINE B2 -26 169 2 6 1350 291 277 25 149 chr6 100291170 100291366 -49225671 - MIR SINE MIR -27 241 50 6 1350 747 190 8 0 chr6 100292058 100292179 -49224858 + B1_Mur1 SINE Alu 16 137 -12 6 1350 221 233 0 0 chr6 100292185 100292228 -49224809 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 6 1350 318 269 130 58 chr6 100292236 100292390 -49224647 + MER102a DNA MER1_type 83 247 -83 6 1350 800 215 25 35 chr6 100292721 100292919 -49224118 + B3A SINE B2 2 197 -1 6 1350 270 319 14 0 chr6 100292919 100292991 -49224046 - MLT1F1 LTR MaLR -434 135 63 6 1350 358 276 90 49 chr6 100293017 100293139 -49223898 - PB1 SINE Alu 0 127 1 6 1350 742 301 113 31 chr6 100293162 100293550 -49223487 - MT2A LTR ERVL -7 526 107 6 1350 252 297 123 39 chr6 100293446 100293600 -49223437 - MTEa LTR MaLR -162 217 51 6 1350 777 176 15 0 chr6 100293631 100293767 -49223270 - B1_Mus1 SINE Alu -10 138 1 6 1350 248 241 17 17 chr6 100293771 100293830 -49223207 - MTEa LTR MaLR -320 59 1 6 1350 225 362 52 31 chr6 100293966 100294063 -49222974 + MIR3 SINE MIR 61 159 -49 6 1350 805 263 113 11 chr6 100294664 100294929 -49222108 - B4 SINE B4 0 292 1 6 1350 794 284 20 5 chr6 100295872 100296067 -49220970 + B4A SINE B4 3 200 -92 6 1350 629 273 25 96 chr6 100296067 100296288 -49220749 + B3A SINE B2 2 216 0 6 1350 497 226 0 99 chr6 100296292 100296313 -49220724 + ID_B1 SINE B4 78 214 -10 6 1350 740 176 0 46 chr6 100296313 100296444 -49220593 + B1_Mur4 SINE Alu 16 140 -10 6 1350 278 26 26 0 chr6 100296926 100296965 -49220072 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1350 968 207 18 46 chr6 100297246 100297464 -49219573 - B3 SINE B2 -4 212 1 6 1350 756 271 109 47 chr6 100298238 100298513 -49218524 + B4A SINE B4 1 292 0 6 1350 225 255 0 0 chr6 100298623 100298674 -49218363 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1350 342 0 0 0 chr6 100298674 100298712 -49218325 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1350 202 333 0 0 chr6 100298712 100298763 -49218274 + polypurine Low_complexity Low_complexity 2 52 0 6 1350 245 304 34 59 chr6 100298765 100298884 -49218153 + PB1D10 SINE Alu 1 116 -1 6 1350 1378 240 126 19 chr6 100298911 100299379 -49217658 + Lx8 LINE L1 6928 7445 -28 6 1350 630 99 0 0 chr6 100299401 100299492 -49217545 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 6 1350 1333 79 10 21 chr6 100299562 100299756 -49217281 + B2_Mm1t SINE B2 1 192 -1 6 1350 965 228 32 5 chr6 100299772 100299988 -49217049 + ID_B1 SINE B4 2 223 -1 6 1350 502 221 7 7 chr6 100300212 100300349 -49216688 + CT-rich Low_complexity Low_complexity 4 140 0 6 1350 269 333 52 17 chr6 100300424 100300540 -49216497 + RMER12 LTR ERVK 731 850 -472 6 1350 825 328 97 0 chr6 100300552 100300790 -49216247 - B4A SINE B4 -6 286 26 6 1350 3558 45 28 7 chr6 100301260 100301687 -49215350 - RLTR10C LTR ERVK 0 436 1 6 1350 525 265 128 11 chr6 100301893 100302080 -49214957 + ID_B1 SINE B4 2 210 -14 6 1350 579 124 0 0 chr6 100302238 100302351 -49214686 + (TC)n Simple_repeat Simple_repeat 2 114 0 6 1350 475 270 99 28 chr6 100302436 100302577 -49214460 - MLT1A1 LTR MaLR -3 405 255 6 1350 2234 156 78 20 chr6 100302587 100302985 -49214052 + MTC LTR MaLR 1 421 0 6 1350 333 0 0 0 chr6 100303688 100303725 -49213312 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1350 288 0 0 0 chr6 100303725 100303756 -49213281 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1350 268 318 146 70 chr6 100303772 100304108 -49212929 - MLT1F1 LTR MaLR -82 487 59 6 1350 217 246 59 44 chr6 100304201 100304269 -49212768 - ID4_ SINE ID -13 70 2 7 1350 347 193 71 24 chr6 100304274 100304326 -49212711 - PB1D7 SINE Alu -11 109 54 7 1350 284 331 34 34 chr6 100304326 100304473 -49212564 - MLT1N2 LTR MaLR 0 562 416 7 1350 840 268 88 0 chr6 100304632 100304871 -49212166 + MLT2B4 LTR ERVL 1 260 -296 7 1350 369 260 19 37 chr6 100304882 100304990 -49212047 + PB1D10 SINE Alu 11 116 -1 7 1350 248 308 0 103 chr6 100304992 100305079 -49211958 + ID4_ SINE ID 3 80 -3 7 1350 380 214 0 8 chr6 100305079 100305197 -49211840 + (CA)n Simple_repeat Simple_repeat 1 117 0 7 1350 510 307 49 60 chr6 100305215 100305499 -49211538 + B4A SINE B4 1 281 -11 7 1350 184 115 37 37 chr6 100305508 100305562 -49211475 + (TCTCTG)n Simple_repeat Simple_repeat 6 59 0 7 1350 310 311 11 0 chr6 100305852 100305942 -49211095 - BC1_Mm scRNA scRNA -60 92 2 7 1350 401 218 99 0 chr6 100305946 100306047 -49210990 - PB1D10 SINE Alu -6 111 1 7 1350 664 223 27 7 chr6 100306637 100306786 -49210251 - ID_B1 SINE B4 -71 153 2 7 1350 2319 142 53 53 chr6 100307084 100307500 -49209537 + MTD LTR MaLR 4 419 0 7 1350 315 0 0 0 chr6 100307664 100307699 -49209338 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1350 541 284 60 0 chr6 100307701 100307817 -49209220 - RSINE1 SINE B4 -14 151 29 7 1350 688 111 176 0 chr6 100307892 100308000 -49209037 + B1_Mus1 SINE Alu 3 129 -19 7 1350 2258 83 30 0 chr6 100308011 100308313 -49208724 - ORR1A2 LTR MaLR -16 311 1 7 1350 228 182 0 0 chr6 100308385 100308429 -49208608 + T-rich Low_complexity Low_complexity 1 44 0 7 1350 774 94 154 23 chr6 100308429 100308559 -49208478 - B1_Mus2 SINE Alu 0 147 1 7 1350 324 337 124 28 chr6 100308778 100309028 -49208009 - MLT1K LTR MaLR -6 589 316 7 1350 414 0 0 0 chr6 100309186 100309232 -49207805 + (A)n Simple_repeat Simple_repeat 1 46 0 7 1350 344 269 151 93 chr6 100309341 100309546 -49207491 + RMER15 LTR ERVL 293 509 -66 7 1350 216 305 0 0 chr6 100309595 100309654 -49207383 + C-rich Low_complexity Low_complexity 3 61 0 7 1350 784 286 84 73 chr6 100309677 100309964 -49207073 - B4A SINE B4 0 292 3 7 1350 747 262 15 73 chr6 100309988 100310194 -49206843 - B3A SINE B2 -3 195 2 7 1350 288 0 0 0 chr6 100310206 100310238 -49206799 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1350 963 26 0 0 chr6 100310238 100310355 -49206682 - B1_Mm SINE Alu 0 147 31 7 1350 712 189 79 0 chr6 100310383 100310510 -49206527 + B1_Mus1 SINE Alu 2 138 -10 7 1350 180 0 0 0 chr6 100311404 100311424 -49205613 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 7 1350 501 267 100 0 chr6 100311434 100311554 -49205483 - ID_B1 SINE B4 0 224 93 7 1350 194 174 22 0 chr6 100311587 100311633 -49205404 + CT-rich Low_complexity Low_complexity 2 48 0 7 1350 307 374 0 0 chr6 100311633 100311732 -49205305 - B1F1 SINE Alu -45 104 6 7 1350 1239 48 0 0 chr6 100311875 100312021 -49205016 + B1_Mus2 SINE Alu 2 147 0 7 1350 1109 63 0 21 chr6 100312631 100312776 -49204261 - B1_Mus2 SINE Alu 0 147 6 7 1350 675 211 6 44 chr6 100312636 100312795 -49204242 - ID_B1 SINE B4 -2 222 70 7 1350 625 186 115 0 chr6 100312781 100312894 -49204143 - B1_Mus2 SINE Alu -9 138 13 7 1350 232 295 0 16 chr6 100312921 100312983 -49204054 + CT-rich Low_complexity Low_complexity 1 61 0 7 1350 538 222 30 0 chr6 100313091 100313190 -49203847 - RSINE1 SINE B4 -63 102 1 7 1350 454 217 118 55 chr6 100313286 100313413 -49203624 - B1_Mur2 SINE Alu -14 135 1 7 1350 554 259 159 18 chr6 100313413 100313611 -49203426 - B4A SINE B4 -63 229 1 7 1350 316 308 53 59 chr6 100314141 100314293 -49202744 - MamGypLTR2c LTR Gypsy -27 1041 891 7 1350 375 339 112 93 chr6 100314409 100314776 -49202261 + L1ME3 LINE L1 5782 6155 -7 7 1350 288 70 0 0 chr6 100314854 100314897 -49202140 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 7 1350 755 264 128 30 chr6 100314900 100315166 -49201871 - B4 SINE B4 0 292 1 7 1350 180 0 0 0 chr6 100316242 100316262 -49200775 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 7 1350 211 280 0 0 chr6 100316490 100316540 -49200497 + (CATG)n Simple_repeat Simple_repeat 4 53 0 7 1350 240 281 98 0 chr6 100316624 100316706 -49200331 + MIRc SINE MIR 48 137 -131 7 1350 1150 259 93 24 chr6 100316940 100317229 -49199808 + MTE2b LTR MaLR 3 311 -68 7 1350 180 286 20 0 chr6 100317339 100317388 -49199649 - L2a LINE L2 -16 3410 3361 7 1350 204 305 88 41 chr6 100317491 100317638 -49199399 - L2a LINE L2 -241 3185 3032 7 1350 291 308 0 49 chr6 100317744 100317826 -49199211 - PB1D10 SINE Alu -38 79 2 7 1350 21 0 0 0 chr6 100318137 100318158 -49198879 + AT_rich Low_complexity Low_complexity 1 21 0 7 1350 214 292 73 36 chr6 100318159 100318269 -49198768 - MIRb SINE MIR -120 148 35 7 1350 626 255 0 27 chr6 100319233 100319382 -49197655 + B1F SINE Alu 5 149 0 7 1350 201 39 0 0 chr6 100319385 100319411 -49197626 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1350 255 181 27 27 chr6 100319445 100319519 -49197518 + A-rich Low_complexity Low_complexity 1 74 0 7 1350 389 330 98 71 chr6 100319715 100319994 -49197043 + B4 SINE B4 15 290 -2 7 1350 207 0 0 0 chr6 100320007 100320030 -49197007 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1350 728 273 134 41 chr6 100320052 100320260 -49196777 + L1MC1 LINE L1 5577 5828 -505 7 1350 720 178 78 0 chr6 100320260 100320389 -49196648 + B1_Mur2 SINE Alu 4 142 -7 7 1350 728 273 134 41 chr6 100320389 100320689 -49196348 + L1MC1 LINE L1 5829 6131 -202 7 1350 2319 133 14 25 chr6 100320694 100321090 -49195947 - ORR1B1 LTR MaLR -8 386 1 7 1350 904 181 330 0 chr6 100321122 100321328 -49195709 + RMER5 LTR ERV1 254 527 -7 7 1350 363 60 0 0 chr6 100321338 100321388 -49195649 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1350 819 259 68 0 chr6 100321474 100321679 -49195358 + ID_B1 SINE B4 3 221 -3 7 1350 238 258 101 108 chr6 100321561 100321700 -49195337 + B1_Mur4 SINE Alu 11 148 -2 7 1350 549 165 0 0 chr6 100321701 100321822 -49195215 + (CA)n Simple_repeat Simple_repeat 1 121 0 7 1350 365 211 13 47 chr6 100321885 100321914 -49195123 + ID_B1 SINE B4 71 166 -126 7 1350 536 72 0 0 chr6 100321914 100321983 -49195054 + B1_Mus2 SINE Alu 11 79 -68 7 1350 1019 265 63 7 chr6 100322300 100322570 -49194467 - B4A SINE B4 0 292 8 7 1350 550 286 28 14 chr6 100322735 100322877 -49194160 - ID_B1 SINE B4 -80 144 1 7 1350 249 326 65 0 chr6 100323549 100323641 -49193396 + MTE2b LTR MaLR 279 376 -3 7 1350 325 287 49 8 chr6 100323807 100323930 -49193107 - MIR SINE MIR -48 214 87 7 1350 218 259 19 0 chr6 100323998 100324052 -49192985 + MIR SINE MIR 23 77 -131 7 1350 264 77 0 0 chr6 100324218 100324257 -49192780 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 1350 279 54 0 0 chr6 100324390 100324427 -49192610 + (TTA)n Simple_repeat Simple_repeat 2 38 0 7 1350 748 196 21 92 chr6 100324427 100324579 -49192458 - B3 SINE B2 -12 204 51 7 1350 3192 174 55 62 chr6 100324581 100325268 -49191769 - RMER19B LTR ERVK -167 735 131 7 1350 1474 0 23 0 chr6 100325268 100325444 -49191593 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1350 1099 85 7 0 chr6 100325448 100325589 -49191448 - B1_Mus1 SINE Alu -5 143 2 7 1350 816 159 36 1 chr6 100325589 100325731 -49191306 - RMER19B LTR ERVK -582 155 1 7 1350 233 316 133 26 chr6 100326545 100326740 -49190297 - L1ME2 LINE L1 -42 6122 5907 7 1350 353 223 179 30 chr6 100327064 100327198 -49189839 - MIRb SINE MIR 0 268 115 7 1350 180 0 0 0 chr6 100327536 100327556 -49189481 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1350 1084 52 73 0 chr6 100327570 100327706 -49189331 - B1_Mm SINE Alu -1 146 1 7 1350 207 88 0 0 chr6 100327716 100327750 -49189287 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1350 274 195 195 0 chr6 100328686 100328768 -49188269 - MER57-int LTR ERV1 -270 7267 7170 7 1350 665 248 0 30 chr6 100329395 100329528 -49187509 - ID_B1 SINE B4 -3 221 93 7 1350 1007 248 71 74 chr6 100329528 100329867 -49187170 - RMER15 LTR ERVL 0 575 238 7 1350 495 211 10 21 chr6 100330020 100330117 -49186920 - ID_B1 SINE B4 -127 97 2 7 1350 264 230 79 22 chr6 100330132 100330221 -49186816 - MARNA DNA Mariner -134 452 359 7 1350 224 310 0 0 chr6 100331772 100331830 -49185207 - ID4_ SINE ID -11 72 15 7 1350 293 345 28 88 chr6 100332224 100332405 -49184632 - MLT1E1 LTR MaLR -16 638 469 7 1350 319 167 50 0 chr6 100332425 100332485 -49184552 + MTEb LTR MaLR 3 65 -314 7 1350 831 214 38 7 chr6 100332461 100332643 -49184394 + ID_B1 SINE B4 41 230 -62 7 1350 1377 86 21 0 chr6 100332736 100332923 -49184114 + B2_Mm2 SINE B2 2 192 -3 7 1350 948 244 44 5 chr6 100332960 100333166 -49183871 - B3 SINE B2 -2 214 1 7 1350 993 189 22 10 chr6 100333484 100333694 -49183343 - ORR1B1 LTR MaLR -27 367 144 7 1350 228 229 33 0 chr6 100333844 100333905 -49183132 - L1MB8 LINE L1 -180 5998 5936 7 1350 778 113 153 21 chr6 100333905 100334049 -49182988 - ORR1B2 LTR MaLR -204 163 1 7 1350 1243 181 14 0 chr6 100334674 100334889 -49182148 - ID_B1 SINE B4 -3 221 4 7 1350 1003 221 71 14 chr6 100335123 100335334 -49181703 + ID_B1 SINE B4 2 224 0 7 1350 776 231 198 0 chr6 100336037 100336279 -49180758 + B4A SINE B4 1 290 -2 7 1350 278 192 0 50 chr6 100336299 100336458 -49180579 + (CAGAGA)n Simple_repeat Simple_repeat 6 156 0 7 1350 202 224 60 0 chr6 100336461 100336528 -49180509 + (CAGA)n Simple_repeat Simple_repeat 4 74 0 8 1350 218 116 0 23 chr6 100336535 100336579 -49180458 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1350 373 304 0 25 chr6 100336607 100336725 -49180312 + MLT1I LTR MaLR 297 411 0 8 1350 533 365 95 13 chr6 100336832 100337137 -49179900 + MER2 DNA MER2_type 4 333 -12 8 1350 880 289 66 114 chr6 100337479 100337901 -49179136 + MLT1A1 LTR MaLR 4 405 -3 8 1350 757 272 99 0 chr6 100338463 100338676 -49178361 + B4A SINE B4 1 234 -58 8 1350 314 203 64 23 chr6 100338668 100338776 -49178261 + RSINE1 SINE B4 6 120 -45 8 1350 1510 161 151 9 chr6 100338799 100339118 -49177919 + ORR1D1 LTR MaLR 1 364 -10 8 1350 189 74 0 0 chr6 100339132 100339159 -49177878 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1350 237 321 13 13 chr6 100339190 100339269 -49177768 + B4A SINE B4 214 292 0 8 1350 265 322 200 5 chr6 100339526 100339726 -49177311 + L2c LINE L2 2929 3167 -220 8 1350 3405 57 0 12 chr6 100340897 100341309 -49175728 - MTB_Mm LTR MaLR 0 407 1 8 1350 383 284 49 0 chr6 100341453 100341555 -49175482 + PB1D10 SINE Alu 2 108 -9 8 1350 1398 257 66 41 chr6 100341990 100342384 -49174653 - MTD LTR MaLR -15 404 1 8 1350 1154 83 0 0 chr6 100342547 100342692 -49174345 + B1_Mus2 SINE Alu 1 145 -2 8 1350 740 268 89 55 chr6 100343257 100343514 -49173523 + MTEa LTR MaLR 71 336 -43 8 1350 456 314 92 109 chr6 100343591 100343723 -49173314 - MLT1C LTR MaLR -6 461 319 8 1350 3190 46 12 22 chr6 100343723 100344123 -49172914 + MTA_Mm LTR MaLR 1 396 0 8 1350 456 314 92 109 chr6 100344123 100344412 -49172625 - MLT1C LTR MaLR -149 318 47 8 1350 482 318 8 0 chr6 100345382 100345508 -49171529 - ID_B1 SINE B4 0 224 98 8 1350 1047 149 0 2 chr6 100345509 100346037 -49171000 + (TG)n Simple_repeat Simple_repeat 1 526 0 8 1350 843 179 0 0 chr6 100346059 100346238 -49170799 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1350 268 225 52 52 chr6 100347107 100347243 -49169794 - L1MC1 LINE L1 0 6333 6198 8 1350 243 146 0 0 chr6 100347537 100347578 -49169459 + (TAA)n Simple_repeat Simple_repeat 2 42 0 8 1350 668 268 150 33 chr6 100347579 100347919 -49169118 + MLT1A1 LTR MaLR 7 408 0 8 1350 358 258 10 58 chr6 100348011 100348114 -49168923 - B1F SINE Alu -1 148 51 8 1350 641 274 187 20 chr6 100348263 100348509 -49168528 - B4A SINE B4 -5 287 1 8 1350 264 219 85 94 chr6 100348570 100348676 -49168361 + MIR SINE MIR 48 152 -56 8 1350 317 227 0 0 chr6 100349697 100349763 -49167274 - MTE2b LTR MaLR -2 377 312 8 1350 543 202 0 0 chr6 100349789 100349903 -49167134 + (TG)n Simple_repeat Simple_repeat 1 114 0 8 1350 540 267 45 211 chr6 100349947 100350279 -49166758 - B4 SINE B4 -14 278 2 8 1350 237 301 20 50 chr6 100350880 100350980 -49166057 + B1F SINE Alu 6 139 -10 8 1350 498 33 0 0 chr6 100350980 100351040 -49165997 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1350 236 298 0 0 chr6 100351057 100351104 -49165933 + ID4_ SINE ID 37 83 0 8 1350 270 365 52 17 chr6 100351155 100351328 -49165709 + L2a LINE L2 2994 3172 -254 8 1350 1089 245 66 37 chr6 100351355 100351626 -49165411 - B4 SINE B4 -3 289 11 8 1350 1294 211 43 152 chr6 100351787 100352207 -49164830 - ORR1D1 LTR MaLR 0 374 1 8 1350 1325 241 21 0 chr6 100352520 100352806 -49164231 + MTEa LTR MaLR 87 378 -1 8 1350 235 391 52 9 chr6 100352953 100353069 -49163968 - L4 LINE RTE -383 1646 1526 8 1350 402 191 138 0 chr6 100353456 100353550 -49163487 + PB1D10 SINE Alu 2 108 -9 8 1350 521 277 9 0 chr6 100353556 100353668 -49163369 + RSINE1 SINE B4 3 115 -50 8 1350 871 151 0 64 chr6 100353839 100353995 -49163042 + B1_Mur4 SINE Alu 4 149 -1 8 1350 477 127 0 0 chr6 100354016 100354095 -49162942 + (GA)n Simple_repeat Simple_repeat 2 80 0 8 1350 238 354 10 20 chr6 100354183 100354281 -49162756 + MLT1H LTR MaLR 258 354 -195 8 1350 194 333 53 0 chr6 100354602 100354677 -49162360 - MIR SINE MIR -4 258 180 8 1350 432 271 37 0 chr6 100354718 100354825 -49162212 + MLT1D LTR MaLR 21 131 -496 8 1350 970 192 70 21 chr6 100354826 100355012 -49162025 + B3 SINE B2 1 195 -21 8 1350 729 255 94 33 chr6 100355012 100355261 -49161776 + MLT1D LTR MaLR 155 456 -168 8 1350 207 343 0 56 chr6 100355473 100355544 -49161493 + MIR3 SINE MIR 133 199 -9 8 1350 2449 45 42 60 chr6 100355583 100355916 -49161121 - ORR1A2 LTR MaLR 0 327 1 8 1350 1350 249 133 11 chr6 100355924 100356293 -49160744 + MTD LTR MaLR 4 417 -2 8 1350 22 0 0 0 chr6 100356560 100356582 -49160455 + AT_rich Low_complexity Low_complexity 1 22 0 8 1350 666 251 67 80 chr6 100356601 100356877 -49160160 - ORR1E LTR MaLR -3 356 54 8 1350 257 289 140 0 chr6 100357088 100357196 -49159841 + MIR SINE MIR 38 168 -108 8 1350 932 211 14 87 chr6 100357254 100357472 -49159565 - B3 SINE B2 -14 202 1 8 1350 1112 241 15 19 chr6 100357565 100357827 -49159210 + B4A SINE B4 1 261 -31 8 1350 459 0 0 0 chr6 100357887 100357938 -49159099 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 1350 517 317 98 29 chr6 100358475 100358680 -49158357 + ORR1E LTR MaLR 4 222 -137 8 1350 812 85 0 0 chr6 100359385 100359491 -49157546 - B2_Mm2 SINE B2 -88 107 2 8 1350 3108 61 0 2 chr6 100359602 100359997 -49157040 - L1Md_F2 LINE L1 0 6582 6189 8 1350 427 286 91 26 chr6 100360011 100360268 -49156769 - MLT1F LTR MaLR -243 336 67 8 1350 958 132 168 5 chr6 100360365 100360555 -49156482 - URR1B DNA MER1_type -2 223 3 8 1350 3381 48 2 2 chr6 100360641 100361041 -49155996 - MTB LTR MaLR 0 400 1 8 1350 379 214 231 10 chr6 100361239 100361343 -49155694 + B4A SINE B4 105 231 -61 8 1350 418 276 7 88 chr6 100361326 100361356 -49155681 + ID_B1 SINE B4 77 211 -13 8 1350 751 116 0 43 chr6 100361356 100361473 -49155564 + B1_Mur4 SINE Alu 26 137 -13 8 1350 202 0 0 136 chr6 100361478 100361522 -49155515 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 8 1350 816 171 43 0 chr6 100361540 100361680 -49155357 + B1_Mur2 SINE Alu 4 149 0 8 1350 221 83 28 0 chr6 100361680 100361716 -49155321 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 8 1350 543 69 0 0 chr6 100362797 100362869 -49154168 + (TCCC)n Simple_repeat Simple_repeat 1 72 0 8 1350 421 303 25 0 chr6 100363100 100363112 -49153925 - B1F SINE Alu -2 147 136 8 1350 231 61 0 0 chr6 100363112 100363145 -49153892 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 1350 421 303 25 0 chr6 100363145 100363254 -49153783 - B1F SINE Alu -14 135 24 8 1350 23 0 0 71 chr6 100363503 100363545 -49153492 + AT_rich Low_complexity Low_complexity 1 39 0 8 1350 626 196 62 20 chr6 100363545 100363691 -49153346 - MER20 DNA MER1_type -1 218 67 8 1350 25 0 0 28 chr6 100363826 100363845 -49153192 + AT_rich Low_complexity Low_complexity 1 19 0 8 1350 798 216 7 0 chr6 100363845 100363993 -49153044 - B1_Mur3 SINE Alu 0 149 1 8 1350 25 0 0 28 chr6 100363993 100364009 -49153028 + AT_rich Low_complexity Low_complexity 1 16 0 8 1350 1597 38 0 5 chr6 100364115 100364301 -49152736 + B2_Mm2 SINE B2 2 186 -9 8 1350 441 0 0 0 chr6 100364305 100364354 -49152683 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 8 1350 330 229 127 45 chr6 100364381 100364491 -49152546 - RSINE1 SINE B4 -13 152 34 8 1350 528 257 81 7 chr6 100364459 100364608 -49152429 - B4A SINE B4 -104 188 29 8 1350 289 206 48 0 chr6 100364609 100364672 -49152365 - PB1D10 SINE Alu -19 98 33 8 1350 186 43 0 0 chr6 100364766 100364789 -49152248 + (TTTTC)n Simple_repeat Simple_repeat 1 23 0 8 1350 205 324 18 71 chr6 100365079 100365192 -49151845 - MIRb SINE MIR -46 222 116 8 1350 261 253 189 0 chr6 100365263 100365358 -49151679 - MER5A1 DNA MER1_type -7 159 47 8 1350 248 0 31 0 chr6 100366205 100366237 -49150800 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1350 1244 255 84 27 chr6 100366346 100366681 -49150356 - MTEa LTR MaLR 0 379 26 8 1350 341 313 88 47 chr6 100367004 100367175 -49149862 + MER45A DNA Tip100 1 178 0 8 1350 252 0 0 0 chr6 100367398 100367426 -49149611 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1350 456 100 0 0 chr6 100367426 100367506 -49149531 + (GA)n Simple_repeat Simple_repeat 2 81 0 8 1350 903 253 55 5 chr6 100367510 100367709 -49149328 - B4 SINE B4 -82 210 2 8 1350 211 216 0 0 chr6 100368120 100368157 -49148880 + T-rich Low_complexity Low_complexity 4 40 0 8 1350 248 337 58 0 chr6 100368192 100368278 -49148759 - PB1D7 SINE Alu -22 98 8 8 1350 2190 37 22 0 chr6 100368310 100368581 -49148456 + MTB LTR MaLR 124 400 0 8 1350 210 118 0 0 chr6 100369199 100369233 -49147804 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1350 546 340 96 54 chr6 100369847 100370161 -49146876 - ORR1D2 LTR MaLR 0 370 44 8 1350 993 47 0 0 chr6 100371157 100371284 -49145753 + (TGGA)n Simple_repeat Simple_repeat 3 129 0 8 1350 602 243 87 52 chr6 100371322 100371552 -49145485 + MER5C DNA MER1_type 75 312 -1 8 1350 279 0 0 0 chr6 100371569 100371600 -49145437 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1350 610 240 75 90 chr6 100372823 100373144 -49143893 + MLT1H LTR MaLR 123 438 -111 8 1350 245 229 0 40 chr6 100373213 100373263 -49143774 - B4 SINE B4 -29 263 216 8 1350 213 65 0 0 chr6 100373275 100373306 -49143731 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1350 584 305 32 7 chr6 100373315 100373423 -49143614 - RSINE1 SINE B4 -3 162 50 8 1350 414 0 0 0 chr6 100373423 100373469 -49143568 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 9 1350 584 305 32 7 chr6 100373469 100373515 -49143522 - RSINE1 SINE B4 -116 49 4 8 1350 756 294 12 70 chr6 100373515 100373760 -49143277 - B4 SINE B4 -60 232 3 8 1350 813 274 30 130 chr6 100373893 100374300 -49142737 + ORR1D2 LTR MaLR 5 370 0 9 1350 333 0 0 0 chr6 100374332 100374369 -49142668 + (A)n Simple_repeat Simple_repeat 1 37 0 9 1350 408 307 7 35 chr6 100374753 100374898 -49142139 + ID_B1 SINE B4 82 222 -2 9 1350 240 232 54 0 chr6 100374905 100374961 -49142076 + ID4 SINE ID 9 67 -16 9 1350 237 265 44 0 chr6 100374961 100374973 -49142064 + tRNA-Ala-GCY_ tRNA tRNA 3 73 -2 9 1350 255 203 0 0 chr6 100375599 100375668 -49141369 + C-rich Low_complexity Low_complexity 1 69 0 9 1350 660 295 18 0 chr6 100375753 100375919 -49141118 + MTE2b LTR MaLR 206 374 -5 9 1350 262 219 25 76 chr6 100375972 100376051 -49140986 + RSINE1 SINE B4 55 129 -36 9 1350 31 0 0 0 chr6 100376327 100376358 -49140679 + AT_rich Low_complexity Low_complexity 1 31 0 9 1350 207 0 0 0 chr6 100376358 100376381 -49140656 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1350 407 306 26 51 chr6 100376407 100376524 -49140513 - RSINE1 SINE B4 -21 144 31 9 1350 341 228 25 0 chr6 100376635 100376714 -49140323 + ID2 SINE ID 3 83 0 9 1350 769 337 12 8 chr6 100376728 100376979 -49140058 + B4 SINE B4 5 256 -36 9 1350 746 134 0 8 chr6 100377139 100377267 -49139770 + (TTC)n Simple_repeat Simple_repeat 2 128 0 9 1350 285 358 122 25 chr6 100377307 100377585 -49139452 - MER90a LTR ERV1 -48 566 262 9 1350 319 307 0 0 chr6 100377756 100377831 -49139206 + ID4 SINE ID 2 76 -7 9 1350 378 0 0 0 chr6 100377842 100377884 -49139153 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1350 927 253 72 36 chr6 100378764 100379043 -49137994 + B4 SINE B4 1 289 -3 9 1350 270 0 0 0 chr6 100379250 100379280 -49137757 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1350 537 325 38 0 chr6 100379541 100379750 -49137287 - L1M5 LINE L1 -392 5787 5571 9 1350 303 323 20 0 chr6 100380010 100380109 -49136928 - BC1_Mm scRNA scRNA -34 118 18 9 1350 518 228 70 0 chr6 100380097 100380211 -49136826 + MTE2b LTR MaLR 206 327 -52 9 1350 280 385 35 7 chr6 100380637 100380781 -49136256 - L2b LINE L2 -1 3374 3227 9 1350 2148 155 104 3 chr6 100380884 100381259 -49135778 + MTC LTR MaLR 1 413 -8 9 1350 264 232 42 28 chr6 100382030 100382101 -49134936 + PB1D10 SINE Alu 11 82 -35 9 1350 228 284 0 15 chr6 100382150 100382218 -49134819 + BC1_Mm scRNA scRNA 8 74 -78 9 1350 933 271 14 0 chr6 100382157 100382364 -49134673 + ID_B1 SINE B4 15 224 0 9 1350 522 239 67 7 chr6 100383877 100384012 -49133025 + B4A SINE B4 90 232 -60 9 1350 533 225 185 11 chr6 100384013 100384197 -49132840 + B3 SINE B2 1 216 0 9 1350 1229 62 0 0 chr6 100384211 100384356 -49132681 + B1_Mus2 SINE Alu 2 146 -1 9 1350 211 324 0 40 chr6 100384501 100384575 -49132462 + ID4_ SINE ID 1 71 -12 9 1350 1417 140 245 25 chr6 100384684 100385007 -49132030 - RLTR45 LTR ERVK 0 482 89 9 1350 399 247 0 0 chr6 100385019 100385108 -49131929 - ID_B1 SINE B4 -53 171 83 9 1350 1072 107 11 11 chr6 100386261 100386440 -49130597 + (TCTCCC)n Simple_repeat Simple_repeat 1 179 0 9 1350 685 138 44 9 chr6 100386446 100386673 -49130364 + CT-rich Low_complexity Low_complexity 1 234 0 9 1350 945 231 35 20 chr6 100387580 100387779 -49129258 + B3 SINE B2 1 202 -14 9 1350 522 247 0 0 chr6 100387780 100387926 -49129111 + (TA)n Simple_repeat Simple_repeat 1 146 0 9 1350 213 39 0 0 chr6 100388023 100388049 -49128988 + (TC)n Simple_repeat Simple_repeat 2 27 0 9 1350 270 304 18 10 chr6 100388065 100388166 -49128871 + MIRm SINE MIR 67 167 -101 9 1350 288 0 0 0 chr6 100388785 100388817 -49128220 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1350 249 271 34 0 chr6 100389214 100389273 -49127764 + (CCCA)n Simple_repeat Simple_repeat 3 63 0 9 1350 268 324 126 22 chr6 100389273 100389473 -49127564 + MIRb SINE MIR 8 232 -36 9 1350 194 243 0 0 chr6 100389710 100389747 -49127290 - L2c LINE L2 -251 3136 3100 9 1350 907 220 135 15 chr6 100389959 100390218 -49126819 + B4A SINE B4 1 290 -2 9 1350 670 259 80 0 chr6 100390258 100390420 -49126617 - B3A SINE B2 -23 175 1 9 1350 22 0 0 0 chr6 100390424 100390446 -49126591 + AT_rich Low_complexity Low_complexity 1 22 0 9 1350 289 210 351 36 chr6 100391692 100391860 -49125177 + ID_B1 SINE B4 2 222 -2 9 1350 376 272 11 11 chr6 100391955 100392048 -49124989 + B3A SINE B2 1 93 -105 9 1350 792 200 21 0 chr6 100392103 100392248 -49124789 + B1_Mur1 SINE Alu 1 148 -1 9 1350 190 356 19 38 chr6 100392310 100392415 -49124622 - MIR SINE MIR -156 106 4 9 1350 610 313 69 78 chr6 100392912 100393272 -49123765 + ORR1E LTR MaLR 1 357 -2 9 1350 312 306 74 144 chr6 100393375 100393673 -49123364 + B4 SINE B4 2 278 -14 9 1350 830 237 96 0 chr6 100394005 100394203 -49122834 + MER58A DNA MER1_type 8 224 0 9 1350 335 259 53 100 chr6 100394305 100394455 -49122582 - MLT1K LTR MaLR 0 595 453 9 1350 303 327 18 0 chr6 100394488 100394598 -49122439 + PB1D10 SINE Alu 5 116 -1 9 1350 1560 235 37 12 chr6 100394710 100395115 -49121922 - MTD LTR MaLR 0 419 5 9 1350 323 268 12 0 chr6 100395475 100395557 -49121480 + B3A SINE B2 1 83 -115 9 1350 588 225 21 21 chr6 100396132 100396273 -49120764 + B1_Mus1 SINE Alu 8 148 0 9 1350 229 377 39 71 chr6 100396360 100396614 -49120423 + MER115 DNA Tip100 10 255 -438 9 1350 443 18 18 0 chr6 100396644 100396700 -49120337 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1350 311 354 8 0 chr6 100396833 100396960 -49120077 + MER115 DNA Tip100 535 662 -31 9 1350 422 49 16 0 chr6 100397939 100398000 -49119037 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 1350 21 0 0 0 chr6 100398416 100398437 -49118600 + AT_rich Low_complexity Low_complexity 1 21 0 9 1350 239 289 53 43 chr6 100398443 100398537 -49118500 + MIRb SINE MIR 27 121 -147 9 1350 187 115 19 37 chr6 100398916 100398970 -49118067 + T-rich Low_complexity Low_complexity 2 54 0 9 1350 1299 77 22 0 chr6 100398996 100399178 -49117859 - B2_Mm2 SINE B2 -8 187 2 9 1350 908 226 9 32 chr6 100399185 100399404 -49117633 - B3 SINE B2 0 216 3 9 1350 201 121 0 0 chr6 100399562 100399595 -49117442 + (TGGGGG)n Simple_repeat Simple_repeat 1 33 0 9 1350 623 302 38 31 chr6 100399960 100400250 -49116787 - B4A SINE B4 0 292 1 9 1350 219 303 51 26 chr6 100400559 100400637 -49116400 - MIRm SINE MIR -5 271 192 9 1350 185 167 19 0 chr6 100400770 100400824 -49116213 + (TA)n Simple_repeat Simple_repeat 1 55 0 9 1351 386 194 0 14 chr6 100401331 100401404 -49115633 - ID4_ SINE ID -10 73 2 9 1351 673 267 71 71 chr6 100401559 100401898 -49115139 - MLT1A LTR MaLR -1 373 35 9 1351 201 74 0 0 chr6 100402153 100402180 -49114857 + (C)n Simple_repeat Simple_repeat 1 27 0 9 1351 1936 188 33 144 chr6 100402767 100403148 -49113889 + RMER5 LTR ERV1 13 328 -206 9 1351 1054 63 35 0 chr6 100403148 100403290 -49113747 - B1_Mus2 SINE Alu 0 147 1 9 1351 1936 188 33 144 chr6 100403290 100403479 -49113558 + RMER5 LTR ERV1 329 520 -14 9 1351 963 100 25 11 chr6 100403730 100404012 -49113025 + (TG)n Simple_repeat Simple_repeat 1 286 0 9 1351 811 211 0 0 chr6 100404970 100405117 -49111920 - B1_Mur1 SINE Alu 0 149 3 9 1351 273 254 0 0 chr6 100405133 100405188 -49111849 - PB1D10 SINE Alu -10 107 53 9 1351 318 249 73 5 chr6 100405216 100405416 -49111621 - Lx6 LINE L1 -533 5826 5630 9 1351 412 261 0 0 chr6 100405457 100405545 -49111492 - PB1D10 SINE Alu -26 91 4 9 1351 309 51 0 0 chr6 100405556 100405595 -49111442 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 9 1351 405 157 0 0 chr6 100405616 100405686 -49111351 - ID4 SINE ID -11 72 3 9 1351 363 196 300 0 chr6 100406236 100406376 -49110661 + ORR1D1 LTR MaLR 193 374 0 9 1351 790 198 47 14 chr6 100408120 100408308 -49108729 - B3 SINE B2 -2 193 1 9 1351 274 262 31 39 chr6 100415688 100415815 -49101222 + GA-rich Low_complexity Low_complexity 1 126 0 9 1351 548 168 69 0 chr6 100416366 100416467 -49100570 - ID_B1 SINE B4 0 224 117 9 1351 363 259 91 105 chr6 100416771 100417063 -49099974 + RLTR12B LTR ERVK 1 273 -168 9 1351 426 206 44 26 chr6 100417086 100417597 -49099440 + GA-rich Low_complexity Low_complexity 1 520 0 9 1351 418 186 45 23 chr6 100417636 100417812 -49099225 + GA-rich Low_complexity Low_complexity 1 180 0 9 1351 339 239 43 23 chr6 100417851 100418203 -49098834 + GA-rich Low_complexity Low_complexity 1 359 0 9 1351 381 221 46 11 chr6 100418259 100418433 -49098604 + GA-rich Low_complexity Low_complexity 1 180 0 9 1351 378 223 42 24 chr6 100418506 100418841 -49098196 + GA-rich Low_complexity Low_complexity 1 341 0 9 1351 272 268 140 62 chr6 100418857 100419036 -49098001 + RLTR12B LTR ERVK 291 483 -45 9 1351 2795 49 0 0 chr6 100419036 100419382 -49097655 - ORR1A1 LTR MaLR 0 346 1 9 1351 309 301 34 93 chr6 100419567 100419772 -49097265 + RMER10A LTR ERVL 19 211 -231 9 1351 681 70 0 0 chr6 100419850 100419950 -49097087 + (TC)n Simple_repeat Simple_repeat 1 100 0 9 1351 207 0 0 0 chr6 100419950 100419972 -49097065 + (CA)n Simple_repeat Simple_repeat 1 23 0 9 1351 525 264 90 0 chr6 100420721 100420865 -49096172 + B3A SINE B2 1 157 -41 9 1351 501 17 0 0 chr6 100420867 100420925 -49096112 + (TC)n Simple_repeat Simple_repeat 2 59 0 9 1351 488 174 44 13 chr6 100421057 100421173 -49095864 + ORR1D1 LTR MaLR 248 374 0 9 1351 1672 105 27 66 chr6 100421182 100421517 -49095520 + RLTRETN_Mm LTR ERVK 1 322 0 9 1351 538 43 0 0 chr6 100421520 100421589 -49095448 - tRNA-Lys-AAA tRNA tRNA 0 76 8 9 1351 324 233 10 62 chr6 100421619 100421715 -49095322 + PB1D10 SINE Alu 27 117 0 9 1351 260 311 150 56 chr6 100421795 100422081 -49094956 + MLT1H LTR MaLR 49 361 -188 1 1351 742 324 89 42 chr6 100422204 100422482 -49094555 - RMER5 LTR ERV1 -20 514 223 1 1351 1869 168 41 14 chr6 100422482 100422845 -49094192 - ORR1D1 LTR MaLR -1 373 1 1 1351 742 324 89 42 chr6 100422845 100423017 -49094020 - RMER5 LTR ERV1 -312 222 43 1 1351 2304 137 39 8 chr6 100423244 100423634 -49093403 - MTC LTR MaLR -19 402 1 1 1351 1008 292 103 3 chr6 100423634 100424011 -49093026 - RMER5 LTR ERV1 -41 493 79 1 1351 484 227 0 0 chr6 100424797 100424894 -49092143 - PB1D10 SINE Alu -19 98 2 1 1351 257 232 50 40 chr6 100425491 100425590 -49091447 + MLT1J LTR MaLR 115 214 -298 1 1351 245 312 134 16 chr6 100425883 100426010 -49091027 - MLT1A LTR MaLR -46 328 187 1 1351 438 337 102 6 chr6 100426086 100426253 -49090784 - ID_B1 SINE B4 -40 184 2 1 1351 654 275 42 21 chr6 100426499 100426692 -49090345 + B3A SINE B2 1 197 -1 1 1351 25 51 0 0 chr6 100426973 100427012 -49090025 + AT_rich Low_complexity Low_complexity 1 39 0 1 1351 190 205 0 0 chr6 100427583 100427622 -49089415 - MIR SINE MIR -69 139 101 1 1351 8477 91 36 17 chr6 100427654 100428925 -49088112 - Lx3A LINE L1 -5 6976 5682 1 1351 753 254 82 5 chr6 100429067 100429273 -49087764 - ID_B1 SINE B4 -2 222 1 1 1351 231 36 0 0 chr6 100429799 100429827 -49087210 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1351 238 364 91 18 chr6 100430004 100430169 -49086868 - MLT1K LTR MaLR -12 583 407 1 1351 26 30 0 0 chr6 100430547 100430580 -49086457 + AT_rich Low_complexity Low_complexity 1 33 0 1 1351 974 180 42 33 chr6 100430581 100430794 -49086243 - MTC LTR MaLR -3 418 204 1 1351 553 199 102 8 chr6 100430988 100431115 -49085922 + B2_Mm2 SINE B2 1 139 -56 1 1351 375 78 0 0 chr6 100431123 100431174 -49085863 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1351 252 0 0 0 chr6 100431814 100431842 -49085195 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1 1351 847 238 14 40 chr6 100432541 100432764 -49084273 + ID_B1 SINE B4 8 224 0 1 1351 613 298 68 40 chr6 100432914 100433166 -49083871 - MER121 Unknown Unknown -8 404 146 1 1351 216 0 0 0 chr6 100433347 100433371 -49083666 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1351 256 330 104 14 chr6 100433844 100433971 -49083066 - MIR SINE MIR -71 197 55 1 1351 482 273 14 28 chr6 100434072 100434215 -49082822 + Lx8 LINE L1 7037 7177 -296 1 1351 276 185 0 0 chr6 100434656 100434710 -49082327 + CT-rich Low_complexity Low_complexity 3 56 0 1 1351 363 241 108 0 chr6 100434711 100434794 -49082243 - PB1D9 SINE Alu -28 92 1 1 1351 247 304 0 0 chr6 100435091 100435147 -49081890 - ID4 SINE ID -22 61 6 1 1351 423 260 63 85 chr6 100435252 100435475 -49081562 - RLTR14 LTR ERV1 0 382 165 1 1351 998 68 23 0 chr6 100436025 100436158 -49080879 + B1_Mm SINE Alu 2 137 -10 1 1351 336 125 0 0 chr6 100436257 100436313 -49080724 - PB1 SINE Alu 0 127 72 1 1351 455 108 12 24 chr6 100436324 100436409 -49080628 - PB1D10 SINE Alu -1 116 33 1 1351 373 311 19 0 chr6 100436980 100437083 -49079954 + RSINE1 SINE B4 59 163 -2 1 1351 185 240 13 0 chr6 100437096 100437171 -49079866 + GA-rich Low_complexity Low_complexity 1 76 0 1 1351 870 274 32 3 chr6 100437291 100437573 -49079464 + B4A SINE B4 1 290 -2 1 1351 264 228 18 0 chr6 100437596 100437653 -49079384 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1351 428 254 137 8 chr6 100437659 100437790 -49079247 + ID_B1 SINE B4 77 224 0 1 1351 313 177 0 25 chr6 100438226 100438307 -49078730 + GA-rich Low_complexity Low_complexity 3 81 0 1 1351 475 211 9 37 chr6 100438398 100438506 -49078531 - B1F1 SINE Alu -5 144 40 1 1351 195 329 32 52 chr6 100439250 100439404 -49077633 - L2b LINE L2 -232 3143 2993 1 1351 581 228 160 61 chr6 100439436 100439698 -49077339 + B4 SINE B4 3 290 -2 1 1351 268 278 0 14 chr6 100439702 100439775 -49077262 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1351 378 0 0 0 chr6 100439777 100439819 -49077218 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1351 741 280 102 89 chr6 100440081 100440453 -49076584 - MTEa LTR MaLR -2 377 1 1 1351 217 198 11 11 chr6 100440514 100440601 -49076436 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 1351 1953 122 27 169 chr6 100440792 100441236 -49075801 - ORR1B1 LTR MaLR 0 394 14 1 1351 186 329 73 34 chr6 100441277 100441456 -49075581 - L2b LINE L2 -623 2796 2611 1 1351 744 264 98 59 chr6 100441549 100441803 -49075234 + B4 SINE B4 4 267 -25 1 1351 605 254 0 0 chr6 100442389 100442523 -49074514 - ID_B1 SINE B4 -15 209 76 1 1351 2545 267 115 68 chr6 100442866 100443857 -49073180 - RMER1A Other Other -10 1020 15 1 1351 2057 75 14 0 chr6 100443870 100444151 -49072886 + ORR1A2 LTR MaLR 1 285 -42 1 1351 828 109 0 0 chr6 100444151 100444270 -49072767 + B1_Mus1 SINE Alu 2 120 -28 1 1351 343 157 21 63 chr6 100444190 100444285 -49072752 + RLTR25B LTR ERVK 441 531 -497 1 1351 336 151 0 0 chr6 100444260 100444313 -49072724 + ORR1A2 LTR MaLR 341 393 -1 1 1351 1259 196 16 3 chr6 100444313 100444564 -49072473 - RMER1B Other Other -805 261 46 1 1351 581 195 30 23 chr6 100445809 100445940 -49071097 + RSINE1 SINE B4 3 134 -31 1 1351 786 183 0 27 chr6 100445990 100446136 -49070901 + B1_Mus2 SINE Alu 1 142 -5 1 1351 30 45 0 0 chr6 100446138 100446182 -49070855 + AT_rich Low_complexity Low_complexity 1 44 0 1 1351 352 240 80 19 chr6 100446230 100446348 -49070689 + B1F1 SINE Alu 14 146 -4 1 1351 1055 263 70 45 chr6 100446578 100446952 -49070085 + Lx5 LINE L1 6665 7047 -3 1 1351 816 163 8 21 chr6 100447065 100447306 -49069731 + CT-rich Low_complexity Low_complexity 1 237 0 1 1351 396 40 0 0 chr6 100447588 100447638 -49069399 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1351 1282 109 5 10 chr6 100447689 100447884 -49069153 + B2_Mm2 SINE B2 2 195 0 1 1351 454 286 36 0 chr6 100449428 100449568 -49067469 - ID_B1 SINE B4 0 224 80 1 1351 358 343 22 14 chr6 100449696 100449835 -49067202 + MTE2a LTR MaLR 7 146 -213 1 1351 385 240 30 21 chr6 100449832 100449954 -49067083 + MTE2a LTR MaLR 256 378 -1 1 1351 367 298 22 87 chr6 100450807 100450991 -49066046 + B4A SINE B4 1 172 -120 1 1351 554 184 0 44 chr6 100451101 100451260 -49065777 + (CA)n Simple_repeat Simple_repeat 2 153 0 1 1351 826 240 48 10 chr6 100451438 100451644 -49065393 - ID_B1 SINE B4 -9 215 2 1 1351 534 283 74 16 chr6 100451884 100452074 -49064963 - LTR82B Low_complexity ERVL -503 327 127 1 1351 339 25 0 0 chr6 100452113 100452153 -49064884 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1351 187 333 0 0 chr6 100452200 100452254 -49064783 - MIR SINE MIR -1 261 208 1 1351 291 344 51 6 chr6 100452878 100453036 -49064001 - L2 LINE L2 -784 2635 2471 1 1351 215 61 0 29 chr6 100453817 100453851 -49063186 + (TGGGGG)n Simple_repeat Simple_repeat 1 33 0 1 1351 200 378 27 0 chr6 100453933 100454044 -49062993 + MIRb SINE MIR 123 236 -32 1 1351 378 261 16 16 chr6 100455146 100455267 -49061770 + ID_B1 SINE B4 102 222 -2 1 1351 237 268 71 0 chr6 100455267 100455323 -49061714 + ID4_ SINE ID 14 73 -10 1 1351 435 160 19 38 chr6 100456308 100456416 -49060621 + PB1 SINE Alu 44 230 -81 1 1351 642 272 60 47 chr6 100456474 100456709 -49060328 + B4 SINE B4 54 291 -1 1 1351 370 207 23 11 chr6 100457173 100457261 -49059776 + MLT1J LTR MaLR 95 183 -329 1 1351 1384 178 224 3 chr6 100457706 100458027 -49059010 - MTD LTR MaLR -14 405 14 1 1351 267 150 0 0 chr6 100458027 100458087 -49058950 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1351 311 279 0 0 chr6 100458102 100458181 -49058856 + MER102a DNA MER1_type 83 161 -169 1 1351 1026 226 9 18 chr6 100458611 100458832 -49058205 + ID_B1 SINE B4 4 222 -2 1 1351 756 271 14 9 chr6 100459487 100459703 -49057334 - ID_B1 SINE B4 -3 221 5 1 1351 234 0 0 0 chr6 100459870 100459896 -49057141 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1351 635 154 8 61 chr6 100459896 100459910 -49057127 - B1_Mur1 SINE Alu -9 140 127 1 1351 2198 128 7 74 chr6 100459910 100460315 -49056722 - ORR1C1 LTR MaLR 0 378 1 1 1351 6433 174 87 6 chr6 100460315 100461712 -49055325 - ORR1C1-int LTR MaLR 0 1509 1 1 1351 635 154 8 61 chr6 100461712 100461821 -49055216 - B1_Mur1 SINE Alu -23 126 22 1 1351 276 281 175 0 chr6 100461912 100462036 -49055001 + MIR SINE MIR 20 173 -103 1 1351 700 188 2 18 chr6 100462236 100462392 -49054645 - B1_Mus1 SINE Alu -1 149 1 1 1351 576 263 103 21 chr6 100462459 100462610 -49054427 + B3 SINE B2 1 165 -51 1 1351 369 0 0 0 chr6 100462610 100462651 -49054386 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1351 576 263 103 21 chr6 100462651 100462693 -49054344 + B3 SINE B2 166 210 -6 1 1351 219 114 0 0 chr6 100462971 100463006 -49054031 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1 1351 441 0 0 0 chr6 100464138 100464187 -49052850 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1351 798 342 72 28 chr6 100464384 100464814 -49052223 - Charlie4a DNA MER1_type -17 491 43 1 1351 751 199 0 0 chr6 100464896 100465027 -49052010 + RSINE1 SINE B4 3 133 -32 1 1351 895 255 54 43 chr6 100465103 100465382 -49051655 + B4 SINE B4 1 282 -10 1 1351 854 169 0 0 chr6 100465408 100465544 -49051493 + B1_Mur2 SINE Alu 2 137 -12 1 1351 356 0 23 0 chr6 100465544 100465588 -49051449 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1351 248 327 59 0 chr6 100465652 100465753 -49051284 + ORR1E LTR MaLR 4 110 -249 1 1351 598 144 25 0 chr6 100466120 100466238 -49050799 + GA-rich Low_complexity Low_complexity 1 121 0 1 1351 1495 164 35 14 chr6 100466393 100466683 -49050354 + RLTR13B1 LTR ERVK 1 296 -597 1 1351 453 81 0 0 chr6 100467401 100467463 -49049574 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 1 1351 443 333 18 6 chr6 100468252 100468415 -49048622 + GA-rich Low_complexity Low_complexity 3 167 0 1 1351 655 166 10 37 chr6 100468430 100468730 -49048307 + GA-rich Low_complexity Low_complexity 1 291 0 1 1351 200 284 60 36 chr6 100469837 100469921 -49047116 - MIRb SINE MIR -66 202 117 1 1351 266 271 55 18 chr6 100470634 100470743 -49046294 + RMER15 LTR ERVL 423 535 -40 1 1351 618 131 0 0 chr6 100470972 100471071 -49045966 + (GA)n Simple_repeat Simple_repeat 1 99 0 1 1351 270 176 0 0 chr6 100471235 100471286 -49045751 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1351 212 200 0 16 chr6 100471578 100471639 -49045398 + CT-rich Low_complexity Low_complexity 1 60 0 1 1351 539 269 52 7 chr6 100471653 100471788 -49045249 - RSINE1 SINE B4 -22 143 3 1 1351 414 309 5 33 chr6 100472357 100472390 -49044647 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 1 1351 438 20 0 0 chr6 100472390 100472441 -49044596 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1351 414 309 5 33 chr6 100472441 100472591 -49044446 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 1 1351 2717 130 18 32 chr6 100473092 100473585 -49043452 + RLTR11A2 LTR ERVK 42 527 0 1 1351 221 309 21 11 chr6 100473807 100473902 -49043135 + L2b LINE L2 3036 3131 -244 1 1351 282 125 0 0 chr6 100473964 100474012 -49043025 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 1 1351 705 222 196 68 chr6 100474300 100474580 -49042457 + ORR1D2 LTR MaLR 55 370 0 1 1351 232 400 45 23 chr6 100474798 100474931 -49042106 + MLT1G3 LTR MaLR 443 578 -17 1 1351 333 241 0 25 chr6 100475006 100475087 -49041950 - PB1D10 SINE Alu -2 115 37 1 1351 217 368 0 11 chr6 100475151 100475239 -49041798 + MIR3 SINE MIR 79 165 -43 1 1351 369 200 0 0 chr6 100475309 100475374 -49041663 - RSINE1 SINE B4 -93 72 8 1 1351 187 229 21 0 chr6 100476060 100476108 -49040929 - L2b LINE L2 -3 3372 3324 1 1351 261 233 127 48 chr6 100477672 100477798 -49039239 - B4A SINE B4 -149 143 8 1 1351 200 35 35 0 chr6 100477877 100477906 -49039131 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 1 1351 1129 192 14 0 chr6 100478047 100478260 -49038777 + B3 SINE B2 1 216 0 1 1351 491 179 0 0 chr6 100478992 100479076 -49037961 - PB1D10 SINE Alu -7 110 27 1 1351 248 256 30 91 chr6 100478994 100479093 -49037944 - MT2B LTR ERVL -337 264 172 1 1351 932 256 18 5 chr6 100479167 100479387 -49037650 + ID_B1 SINE B4 2 224 0 1 1351 714 143 0 0 chr6 100479390 100479509 -49037528 + (GGGGA)n Simple_repeat Simple_repeat 5 123 0 1 1351 470 17 0 17 chr6 100479526 100479586 -49037451 + (GAAAA)n Simple_repeat Simple_repeat 2 60 0 1 1351 189 107 0 0 chr6 100480468 100480496 -49036541 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1351 1134 84 0 27 chr6 100480499 100480683 -49036354 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1 1351 327 232 176 0 chr6 100480884 100481009 -49036028 + B1_Mur2 SINE Alu 3 149 0 1 1351 882 223 14 24 chr6 100481039 100481246 -49035791 + B3 SINE B2 8 212 -4 1 1351 387 0 0 0 chr6 100481613 100481656 -49035381 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1351 272 261 34 11 chr6 100482906 100482995 -49034042 + GA-rich Low_complexity Low_complexity 3 93 0 1 1351 289 248 59 9 chr6 100483009 100483125 -49033912 - MIR3 SINE MIR -25 183 72 1 1351 216 0 0 0 chr6 100483739 100483763 -49033274 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1351 228 309 30 69 chr6 100483986 100484087 -49032950 + MER117 DNA MER1_type 58 154 -43 1 1351 945 27 0 0 chr6 100484336 100484448 -49032589 + (TCTCCC)n Simple_repeat Simple_repeat 4 115 0 1 1351 239 295 160 11 chr6 100484994 100485169 -49031868 + MamRep605 Unknown Unknown 52 252 -624 1 1351 271 294 78 0 chr6 100485412 100485514 -49031523 + Arthur1 DNA Tip100 90 199 -3748 1 1351 420 250 92 70 chr6 100485726 100485868 -49031169 - MER74A LTR ERVL 0 558 414 1 1351 631 309 53 43 chr6 100485920 100486224 -49030813 - MER74A LTR ERVL -247 311 5 1 1351 515 307 115 8 chr6 100486517 100486770 -49030267 + MLT1B LTR MaLR 39 318 -72 1 1351 339 231 32 57 chr6 100487011 100487135 -49029902 - MER102a DNA MER1_type -177 153 33 1 1351 254 299 16 6 chr6 100487259 100487363 -49029674 + MIR SINE MIR 72 176 -32 1 1351 448 193 0 0 chr6 100488368 100488451 -49028586 + ID_B1 SINE B4 100 182 -42 1 1351 336 261 0 80 chr6 100488451 100488468 -49028569 + PB1D10 SINE Alu 19 110 -7 1 1351 1059 29 34 28 chr6 100489235 100489414 -49027623 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1351 390 350 102 0 chr6 100489534 100489720 -49027317 + RMER15 LTR ERVL 371 575 0 1 1351 311 321 121 0 chr6 100489988 100490153 -49026884 - B3A SINE B2 -4 194 10 1 1351 313 284 0 0 chr6 100490771 100490845 -49026192 + B4 SINE B4 11 84 -208 1 1351 431 236 84 65 chr6 100490845 100490999 -49026038 + RSINE1 SINE B4 5 161 -4 1 1351 191 125 25 0 chr6 100491414 100491454 -49025583 + (CGGGGG)n Simple_repeat Simple_repeat 2 42 0 1 1351 320 293 147 29 chr6 100491471 100491744 -49025293 - ORR1E LTR MaLR 0 379 57 1 1351 288 55 55 18 chr6 100491753 100491808 -49025229 + (CCCCCT)n Simple_repeat Simple_repeat 1 57 0 1 1351 733 282 117 53 chr6 100491932 100492277 -49024760 - MLT1A LTR MaLR -4 404 2 1 1351 275 368 9 0 chr6 100492882 100492996 -49024041 - PB1D10 SINE Alu -2 115 1 1 1351 316 289 115 15 chr6 100493016 100493146 -49023891 - B1F1 SINE Alu -2 147 5 1 1351 405 0 0 0 chr6 100493324 100493369 -49023668 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1351 305 254 5 98 chr6 100493565 100493687 -49023350 + L1MB7 LINE L1 6062 6176 -2 1 1351 1037 234 145 3 chr6 100493996 100494313 -49022724 + ORR1D2 LTR MaLR 3 364 -6 1 1351 403 349 36 8 chr6 100494323 100494530 -49022507 - MIR SINE MIR -54 214 1 1 1351 312 169 31 0 chr6 100494956 100495021 -49022016 + ID4 SINE ID 4 70 -13 1 1351 588 247 205 20 chr6 100495022 100495266 -49021771 + B4A SINE B4 4 292 0 1 1351 599 198 18 12 chr6 100495277 100495441 -49021596 + GA-rich Low_complexity Low_complexity 6 170 0 1 1351 639 330 97 0 chr6 100495530 100495839 -49021198 + RCHARR1 DNA MER1_type 1 339 -635 1 1351 728 262 26 5 chr6 100495943 100496135 -49020902 + RCHARR1 DNA MER1_type 748 943 -31 1 1351 552 177 193 37 chr6 100496207 100496342 -49020695 + B3A SINE B2 1 156 -42 1 1351 480 18 0 0 chr6 100496344 100496401 -49020636 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1351 259 361 105 68 chr6 100496556 100496614 -49020423 + MER63C DNA AcHobo 56 116 -814 1 1351 1229 20 0 0 chr6 100496614 100496761 -49020276 + B1_Mus2 SINE Alu 1 147 0 1 1351 324 337 76 43 chr6 100496761 100497051 -49019986 + MER63C DNA AcHobo 117 415 -515 1 1351 1110 122 0 0 chr6 100497051 100497231 -49019806 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1351 259 361 105 68 chr6 100497231 100497598 -49019439 + MER63C DNA AcHobo 416 797 -133 1 1351 263 312 53 9 chr6 100497929 100498042 -49018995 + L1ME1 LINE L1 5583 5700 -744 1 1351 1341 254 103 19 chr6 100498776 100499253 -49017784 - RLTR20B3 LTR ERVK -5 572 56 1 1351 844 233 6 0 chr6 100499346 100499522 -49017515 - MTEb LTR MaLR -202 177 1 1 1351 492 227 60 15 chr6 100499522 100499656 -49017381 + L1ME1 LINE L1 5734 5873 -306 1 1351 486 0 0 0 chr6 100499715 100499769 -49017268 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 1 1351 199 250 39 0 chr6 100500052 100500104 -49016933 + MIRb SINE MIR 189 242 -26 1 1351 1806 164 143 14 chr6 100500298 100500669 -49016368 + MTD LTR MaLR 1 419 0 2 1351 285 172 0 0 chr6 100500844 100500908 -49016129 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1351 269 317 48 16 chr6 100501583 100501708 -49015329 - LTR37B LTR ERV1 0 468 340 4 1351 516 147 10 50 chr6 100501795 100501893 -49015144 + B4 SINE B4 2 95 -197 5 1351 562 278 31 31 chr6 100501893 100502056 -49014981 + RSINE1 SINE B4 3 165 0 6 1351 3308 197 173 19 chr6 100502099 100503078 -49013959 - RMER1A Other Other -1 1029 39 7 1351 454 221 52 26 chr6 100503953 100504069 -49012968 - PB1D9 SINE Alu 0 120 2 8 1351 229 329 27 67 chr6 100504072 100504222 -49012815 + MLT1M LTR MaLR 15 158 -514 9 1351 464 187 0 8 chr6 100504615 100504739 -49012298 + (TG)n Simple_repeat Simple_repeat 1 123 0 1 1351 775 238 91 108 chr6 100504776 100504824 -49012213 - B4A SINE B4 0 292 252 1 1351 333 0 0 0 chr6 100504824 100504861 -49012176 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1351 775 238 91 108 chr6 100504861 100505109 -49011928 - B4A SINE B4 -41 251 1 1 1351 226 322 0 0 chr6 100505107 100505166 -49011871 - B1_Mur1 SINE Alu 0 149 91 1 1351 275 321 0 0 chr6 100505129 100505213 -49011824 - ID_B1 SINE B4 -48 176 93 1 1351 366 23 0 0 chr6 100505666 100505709 -49011328 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1351 300 253 53 0 chr6 100505798 100505873 -49011164 + L2a LINE L2 3348 3426 0 1 1351 492 18 0 0 chr6 100505916 100505973 -49011064 + (TTTTC)n Simple_repeat Simple_repeat 1 57 0 1 1351 488 116 12 0 chr6 100508540 100508626 -49008411 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1351 534 234 35 28 chr6 100508781 100508926 -49008111 + B1F SINE Alu 4 149 0 1 1351 328 333 20 27 chr6 100508926 100509074 -49007963 + ORSL-2b DNA Tip100 237 383 -125 2 1351 1090 241 81 4 chr6 100509468 100509739 -49007298 - B4 SINE B4 0 292 1 2 1351 222 304 85 25 chr6 100510634 100510752 -49006285 - MIRb SINE MIR -37 231 107 2 1351 408 345 97 50 chr6 100510757 100511035 -49006002 + B4A SINE B4 2 292 0 2 1351 350 158 0 0 chr6 100511212 100511269 -49005768 + RSINE1 SINE B4 13 69 -96 2 1351 1205 189 10 5 chr6 100511277 100511479 -49005558 + B3 SINE B2 2 204 -12 2 1351 302 231 110 46 chr6 100511878 100511901 -49005136 - RSINE1 SINE B4 -17 148 124 2 1351 530 15 15 0 chr6 100511901 100511968 -49005069 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1351 252 0 0 0 chr6 100511968 100511995 -49005042 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 1351 302 231 110 46 chr6 100511995 100512079 -49004958 - RSINE1 SINE B4 -42 123 34 2 1351 225 0 0 0 chr6 100512372 100512397 -49004640 + (C)n Simple_repeat Simple_repeat 1 25 0 2 1351 917 161 157 30 chr6 100514158 100514356 -49002681 + URR1A DNA MER1_type 1 223 -3 3 1351 609 241 64 55 chr6 100514871 100515073 -49001964 - Tigger7 DNA MER2_type -33 2458 2256 3 1351 673 297 153 10 chr6 100515102 100515473 -49001564 - Tigger7 DNA MER2_type -2028 463 1 3 1351 583 177 53 23 chr6 100516070 100516203 -49000834 + B1_Mur2 SINE Alu 2 138 -11 3 1351 288 0 0 0 chr6 100516305 100516337 -49000700 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1351 193 315 53 27 chr6 100517204 100517279 -48999758 - L2b LINE L2 -190 3185 3109 3 1351 29 0 0 0 chr6 100518252 100518281 -48998756 + AT_rich Low_complexity Low_complexity 1 29 0 3 1351 180 318 191 11 chr6 100518747 100518836 -48998201 - MIRc SINE MIR -7 261 157 3 1351 363 306 43 43 chr6 100518909 100519025 -48998012 + PB1D10 SINE Alu 2 117 0 3 1351 242 245 182 10 chr6 100520311 100520410 -48996627 + L1MD2 LINE L1 100 215 -6185 3 1351 596 287 116 80 chr6 100520548 100520885 -48996152 + ORR1E LTR MaLR 5 353 -6 3 1351 1185 128 0 0 chr6 100520919 100521619 -48995418 + (CA)n Simple_repeat Simple_repeat 1 700 0 4 1351 339 253 86 33 chr6 100521700 100521851 -48995186 + L1MD2 LINE L1 717 875 -5525 3 1351 286 233 68 0 chr6 100521851 100521978 -48995059 + L1MD2 LINE L1 5427 5567 -784 3 1351 490 250 0 0 chr6 100522045 100522149 -48994888 + RSINE1 SINE B4 3 106 -59 4 1351 470 286 65 17 chr6 100522315 100522624 -48994413 + L1MD2 LINE L1 5767 6100 -432 3 1351 1091 142 108 0 chr6 100522814 100523018 -48994019 + URR1A DNA MER1_type 1 226 0 4 1351 2252 222 62 32 chr6 100524210 100524777 -48992260 + RLTR31A_Mm LTR ERVK 1 584 0 4 1351 2493 66 25 0 chr6 100524828 100525145 -48991892 + ORR1A2 LTR MaLR 1 325 -2 4 1351 261 0 0 0 chr6 100525275 100525304 -48991733 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1351 351 0 0 0 chr6 100525304 100525342 -48991695 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1351 307 236 27 14 chr6 100525704 100525777 -48991260 + L1MEg LINE L1 1870 1943 -4141 4 1351 618 26 0 0 chr6 100526723 100526799 -48990238 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1351 1448 68 0 26 chr6 100526800 100526995 -48990042 - B2_Mm2 SINE B2 -3 192 3 4 1351 299 262 120 33 chr6 100527032 100527182 -48989855 - RSINE1 SINE B4 -1 164 2 5 1351 833 167 198 11 chr6 100527414 100527596 -48989441 - B3 SINE B2 0 216 1 5 1351 247 292 95 42 chr6 100527760 100527928 -48989109 - MLT1C LTR MaLR -68 399 223 5 1351 447 198 73 12 chr6 100528277 100528359 -48988678 + B4A SINE B4 1 87 -205 5 1351 1004 107 71 38 chr6 100528369 100528553 -48988484 + B2_Mm2 SINE B2 3 192 -3 5 1351 269 286 11 11 chr6 100528563 100528655 -48988382 + B4A SINE B4 2 93 -199 5 1351 378 61 0 0 chr6 100528684 100528733 -48988304 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 5 1351 1095 86 23 14 chr6 100529185 100529398 -48987639 + (TTTCC)n Simple_repeat Simple_repeat 1 214 0 5 1351 881 195 7 0 chr6 100529411 100529560 -48987477 - B1_Mur4 SINE Alu 0 150 1 5 168 714 320 104 10 chr6 100532126 100532423 -48984614 - MER102a DNA MER1_type -4 326 2 5 1352 330 369 12 59 chr6 100532870 100533040 -48983997 + MIR SINE MIR 99 260 -2 6 1352 324 270 44 73 chr6 100534408 100534439 -48982598 + MT2B2 LTR ERVL 131 157 -427 6 1352 608 211 9 0 chr6 100534439 100534548 -48982489 + PB1D10 SINE Alu 1 110 -7 6 1352 238 312 137 47 chr6 100534555 100535142 -48981895 + L1M5 LINE L1 2316 2952 -3194 6 1352 308 294 64 21 chr6 100535486 100535580 -48981457 + L1M5 LINE L1 3343 3440 -2706 6 1352 1141 271 78 14 chr6 100536259 100536604 -48980433 - ORR1D2 LTR MaLR -2 368 2 6 1352 878 156 0 0 chr6 100537195 100537330 -48979707 - B1_Mur1 SINE Alu -13 136 2 6 1352 609 313 94 12 chr6 100538124 100538528 -48978509 + L1M2 LINE L1 2155 2591 -4258 6 1352 3007 292 86 25 chr6 100538617 100538967 -48978070 + L1M2 LINE L1 3299 3679 -3166 6 1352 369 0 0 0 chr6 100538967 100539008 -48978029 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1352 629 154 73 44 chr6 100539009 100539145 -48977892 - B1_Mus2 SINE Alu -6 141 2 6 1352 3007 292 86 25 chr6 100539145 100539375 -48977662 + L1M2 LINE L1 3680 3918 -2927 6 1352 182 37 0 36 chr6 100539375 100539403 -48977634 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1352 3007 292 86 25 chr6 100539403 100540486 -48976551 + L1M2 LINE L1 3919 5065 -1780 6 1352 180 0 0 0 chr6 100540525 100540545 -48976492 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1352 498 267 6 62 chr6 100540547 100540723 -48976314 + Lx8 LINE L1 6118 6283 -1190 7 1352 634 230 19 39 chr6 100540723 100540877 -48976160 + MTD LTR MaLR 1 151 -268 7 1352 474 65 0 0 chr6 100541079 100541141 -48975896 + (AACTG)n Simple_repeat Simple_repeat 4 65 0 7 1352 1441 294 50 45 chr6 100541150 100541865 -48975172 + L1_Rod LINE L1 5096 5814 -33 7 1352 313 289 47 0 chr6 100542471 100542620 -48974417 + L1M5 LINE L1 3860 4015 -2131 7 1352 966 288 232 21 chr6 100542790 100543639 -48973398 + L1M5 LINE L1 4368 5395 -751 7 1352 215 116 47 0 chr6 100543680 100543723 -48973314 + GA-rich Low_complexity Low_complexity 4 48 0 7 1352 242 242 152 0 chr6 100544002 100544068 -48972969 + ID4 SINE ID 4 79 -4 7 1352 27 29 0 0 chr6 100544593 100544627 -48972410 + AT_rich Low_complexity Low_complexity 1 34 0 7 1352 648 212 15 36 chr6 100544635 100544772 -48972265 - RSINE1 SINE B4 -28 137 4 7 1352 264 137 0 0 chr6 100545427 100545478 -48971559 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 8 1352 181 305 83 28 chr6 100545562 100545670 -48971367 + L2a LINE L2 3309 3422 -4 8 1352 741 280 128 62 chr6 100548159 100548281 -48968756 - B4A SINE B4 0 292 182 8 1352 1605 201 30 14 chr6 100548281 100548649 -48968388 - ORR1D1 LTR MaLR 0 374 1 8 1352 741 280 128 62 chr6 100548649 100548800 -48968237 - B4A SINE B4 -111 181 1 8 1352 180 0 0 0 chr6 100549057 100549077 -48967960 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 8 1352 1961 85 127 0 chr6 100549122 100549405 -48967632 + ORR1A2 LTR MaLR 1 319 -8 8 1352 323 259 25 0 chr6 100550118 100550199 -48966838 + ID4_ SINE ID 1 83 0 8 1352 213 174 43 0 chr6 100550199 100550245 -48966792 + GA-rich Low_complexity Low_complexity 2 49 0 8 1352 437 241 65 0 chr6 100550271 100550379 -48966658 + PB1D10 SINE Alu 3 117 0 8 1352 240 220 346 19 chr6 100551679 100551841 -48965196 + L1MC3 LINE L1 7554 7768 -17 8 1352 446 267 17 43 chr6 100551847 100551989 -48965048 + B4A SINE B4 2 131 -93 9 1352 503 202 31 24 chr6 100552681 100552808 -48964229 - Lx6 LINE L1 -30 7430 7303 9 1352 222 37 0 0 chr6 100552863 100552890 -48964147 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1352 581 214 18 0 chr6 100552997 100553109 -48963928 - B1_Mur3 SINE Alu 0 149 36 9 1352 393 336 0 0 chr6 100554492 100554599 -48962438 - PB1D10 SINE Alu -1 116 10 9 1352 233 149 21 21 chr6 100555927 100555975 -48961062 + 4.5SRNA scRNA scRNA 42 89 -5 9 1352 249 33 0 0 chr6 100556298 100556328 -48960709 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1352 232 178 130 52 chr6 100556426 100556503 -48960534 - MLT1A1 LTR MaLR 0 408 326 9 1352 690 132 9 0 chr6 100557918 100558032 -48959005 + B1_Mus2 SINE Alu 33 147 0 9 1352 569 200 51 82 chr6 100558355 100558513 -48958524 - RSINE1 SINE B4 -2 163 11 9 1352 1026 205 53 5 chr6 100558543 100558749 -48958288 - B3 SINE B2 0 216 1 1 1352 216 0 0 0 chr6 100560408 100560432 -48956605 + (G)n Simple_repeat Simple_repeat 1 24 0 1 1352 688 158 116 0 chr6 100561134 100561280 -48955757 - URR1B DNA MER1_type 0 225 63 1 1352 456 35 0 0 chr6 100561476 100561534 -48955503 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1352 386 211 57 9 chr6 100562010 100562115 -48954922 - PB1D10 SINE Alu -7 110 1 1 1352 1190 204 46 6 chr6 100562476 100562743 -48954294 - MTD LTR MaLR -160 259 2 1 1352 243 88 0 0 chr6 100564177 100564211 -48952826 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1352 386 306 51 55 chr6 100564289 100564569 -48952468 - B4 SINE B4 -12 280 15 1 1352 489 271 28 34 chr6 100565872 100566048 -48950989 + RMER15 LTR ERVL 383 557 -18 1 1352 1516 204 73 28 chr6 100566160 100566518 -48950519 + ORR1D1 LTR MaLR 1 374 0 1 1352 9135 121 49 5 chr6 100566691 100568930 -48948107 + Lx LINE L1 4328 6644 -10 1 1352 698 224 37 42 chr6 100568965 100569156 -48947881 + B3A SINE B2 3 192 -6 1 1352 827 273 139 3 chr6 100569221 100569544 -48947493 + RMER15-int LTR ERVL 1336 1702 -3297 1 1352 275 321 48 69 chr6 100569590 100569881 -48947156 + RMER15-int LTR ERVL 1795 2079 -2920 1 1352 764 283 121 0 chr6 100569922 100570162 -48946875 - B4A SINE B4 -12 280 12 1 1352 2475 249 78 74 chr6 100570446 100570810 -48946227 + RMER15-int LTR ERVL 4148 4512 -487 1 1352 4499 45 7 4 chr6 100570810 100571386 -48945651 + L1Md_F2 LINE L1 6027 6582 0 1 1352 2475 249 78 74 chr6 100571386 100571857 -48945180 + RMER15-int LTR ERVL 4513 4986 -13 1 1352 542 260 102 27 chr6 100571913 100572138 -48944899 + RMER15 LTR ERVL 275 516 -59 1 1352 760 281 53 0 chr6 100573169 100573397 -48943640 - MER58B DNA MER1_type 0 341 102 1 1352 419 331 0 45 chr6 100573547 100573680 -48943357 + ID_B1 SINE B4 88 214 -10 1 1352 789 288 54 43 chr6 100573858 100574137 -48942900 - B4A SINE B4 0 292 11 1 1352 908 219 41 14 chr6 100575727 100575945 -48941092 - MTD LTR MaLR 0 419 196 1 1352 808 160 0 0 chr6 100575983 100576114 -48940923 - B1_Mus1 SINE Alu -11 137 7 1 1352 640 233 66 16 chr6 100576110 100576293 -48940744 - MTD LTR MaLR -214 205 14 1 1352 187 93 23 23 chr6 100576296 100576340 -48940697 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 1352 364 268 35 18 chr6 100577585 100577699 -48939338 + B4A SINE B4 2 117 -175 1 1352 203 175 0 0 chr6 100579507 100579547 -48937490 + A-rich Low_complexity Low_complexity 1 40 0 1 1352 203 275 14 28 chr6 100579897 100579968 -48937069 + CT-rich Low_complexity Low_complexity 5 74 0 1 1352 469 139 0 0 chr6 100580008 100580087 -48936950 - B2_Mm1t SINE B2 -85 108 30 1 1352 344 304 35 35 chr6 100581589 100581705 -48935332 + RSINE1 SINE B4 1 116 -49 1 1352 767 189 94 0 chr6 100582779 100582938 -48934099 + B3 SINE B2 27 200 -16 1 1352 10200 115 28 21 chr6 100582938 100585364 -48931673 + Lx LINE L1 4222 6654 0 1 1352 2644 27 0 9 chr6 100585381 100585722 -48931315 + ORR1A1 LTR MaLR 1 338 -8 1 1352 24 32 0 0 chr6 100585730 100585761 -48931276 + AT_rich Low_complexity Low_complexity 1 31 0 1 1352 366 80 0 0 chr6 100585865 100585915 -48931122 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1352 195 42 0 0 chr6 100586100 100586124 -48930913 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1352 351 0 0 0 chr6 100586382 100586421 -48930616 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1352 472 144 22 0 chr6 100587530 100587620 -48929417 - MTD LTR MaLR -327 92 1 1 1352 334 304 106 19 chr6 100587856 100588017 -48929020 + MLT1E1A LTR MaLR 321 495 -185 1 1352 548 277 68 37 chr6 100588065 100588256 -48928781 + RMER30 DNA MER1_type 5 201 -1 1 1352 489 266 30 42 chr6 100588566 100588731 -48928306 + RSINE1 SINE B4 3 165 0 1 1352 21 0 0 0 chr6 100588736 100588757 -48928280 + AT_rich Low_complexity Low_complexity 1 21 0 1 1352 904 214 80 0 chr6 100588957 100589144 -48927893 + B3 SINE B2 1 202 -14 1 1352 3141 158 49 6 chr6 100589574 100590103 -48926934 - RMER1B Other Other -11 1055 504 1 1352 333 197 0 0 chr6 100590103 100590174 -48926863 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1352 584 261 130 45 chr6 100590201 100590470 -48926567 - B4A SINE B4 0 292 1 1 1352 1395 252 95 7 chr6 100590621 100590669 -48926368 - ORR1D1-int LTR MaLR -18 1562 1514 1 1352 1327 227 72 14 chr6 100590669 100591017 -48926020 - ORR1D2 LTR MaLR 0 370 3 1 1352 1885 192 16 3 chr6 100591017 100591400 -48925637 - ORR1D1-int LTR MaLR -67 1513 967 1 1352 1347 155 157 9 chr6 100591395 100591714 -48925323 - ORR1D1 LTR MaLR -8 366 1 1 1352 1030 216 30 34 chr6 100591725 100591988 -48925049 - ORR1D1-int LTR MaLR -404 966 705 1 1352 281 346 93 37 chr6 100592251 100592521 -48924516 - MLT1J LTR MaLR -183 329 45 1 1352 312 250 87 43 chr6 100592728 100592866 -48924171 + ORR1E LTR MaLR 6 149 -210 1 1352 192 293 53 0 chr6 100595600 100595675 -48921362 - MIRc SINE MIR -30 238 160 1 1352 734 198 148 25 chr6 100597265 100597509 -48919528 + RLTR20D LTR ERVK 1 274 -294 1 1352 601 247 6 39 chr6 100597502 100597658 -48919379 + RLTR20D LTR ERVK 416 566 -12 1 1352 357 276 122 30 chr6 100599098 100599229 -48917808 + RSINE1 SINE B4 3 145 -20 1 1352 357 209 26 0 chr6 100599392 100599483 -48917554 - B1F SINE Alu -1 148 55 1 1352 252 248 26 105 chr6 100600378 100600531 -48916506 + YREP_Mm Unknown Unknown 156 296 -1516 1 1352 850 173 0 0 chr6 100600414 100600547 -48916490 - B1_Mur2 SINE Alu -12 137 5 1 1352 1579 158 75 52 chr6 100600638 100600984 -48916053 + ORR1B1 LTR MaLR 41 394 0 1 1352 280 244 60 12 chr6 100601662 100601745 -48915292 + RSINE1 SINE B4 35 121 -44 1 1352 494 242 83 0 chr6 100602164 100602296 -48914741 + RSINE1 SINE B4 2 144 -21 1 1352 306 213 52 61 chr6 100602882 100602997 -48914040 + MIRc SINE MIR 5 118 -150 1 1352 1055 122 50 0 chr6 100603581 100603762 -48913275 - URR1A DNA MER1_type 0 226 37 1 1352 4036 154 73 35 chr6 100603803 100604572 -48912465 + RMER1B Other Other 87 1066 0 1 1352 1295 14 0 0 chr6 100604583 100604730 -48912307 + B1_Mm SINE Alu 1 147 0 1 1352 189 0 0 0 chr6 100604730 100604751 -48912286 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1352 820 240 146 58 chr6 100604890 100605151 -48911886 + B4A SINE B4 1 284 -8 1 1352 656 213 29 0 chr6 100605527 100605663 -48911374 + B1F2 SINE Alu 1 140 -9 1 1352 421 254 84 8 chr6 100605822 100605941 -48911096 + RSINE1 SINE B4 31 158 -7 1 1352 324 289 65 28 chr6 100606633 100606740 -48910297 + RSINE1 SINE B4 17 127 -38 1 1352 534 232 144 27 chr6 100607399 100607545 -48909492 + RSINE1 SINE B4 3 165 0 1 1352 372 369 37 5 chr6 100607750 100607938 -48909099 - Tigger16b DNA Tigger -31 306 113 1 1352 237 263 0 0 chr6 100608261 100608318 -48908719 - MLT1E2 LTR MaLR -519 108 52 1 1352 189 0 0 0 chr6 100608539 100608560 -48908477 + (GGGTG)n Simple_repeat Simple_repeat 3 23 0 1 1352 2123 147 26 16 chr6 100609049 100609435 -48907602 + MTC LTR MaLR 32 421 0 1 1352 245 315 87 77 chr6 100609771 100610028 -48907009 + ORR1E LTR MaLR 19 271 -99 1 1352 365 219 14 0 chr6 100610129 100610202 -48906835 + ID4 SINE ID 10 83 0 1 1352 212 179 0 0 chr6 100610891 100610930 -48906107 + T-rich Low_complexity Low_complexity 1 39 0 1 1352 244 81 0 0 chr6 100611658 100611695 -48905342 + B3A SINE B2 2 38 -160 1 1352 1029 262 78 18 chr6 100611699 100612033 -48905004 + ORR1D2 LTR MaLR 1 354 -16 1 1352 320 275 55 0 chr6 100612033 100612142 -48904895 + RSINE1 SINE B4 48 162 -3 1 1352 626 268 0 0 chr6 100612226 100612368 -48904669 + B1F1 SINE Alu 1 142 -7 1 1352 547 301 0 7 chr6 100612889 100613036 -48904001 + ID_B1 SINE B4 78 223 -1 1 1352 381 43 0 0 chr6 100613977 100614024 -48903013 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1352 335 262 32 24 chr6 100614656 100614781 -48902256 + L1M5 LINE L1 5653 5778 -462 1 1352 248 289 16 131 chr6 100615675 100615858 -48901179 - RMER21B LTR ERV1 -365 477 316 1 1352 372 273 39 88 chr6 100615890 100616095 -48900942 - RMER21B LTR ERV1 -647 195 1 1 1352 252 146 73 0 chr6 100616095 100616150 -48900887 + L1_Rod LINE L1 5166 5224 -623 1 1352 393 380 14 7 chr6 100616161 100616299 -48900738 + B4A SINE B4 3 141 -151 1 1352 419 286 72 69 chr6 100616474 100616708 -48900329 + B4A SINE B4 60 291 -1 1 1352 270 0 0 0 chr6 100616724 100616754 -48900283 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1352 449 215 80 46 chr6 100616776 100616927 -48900110 + L1M2 LINE L1 5365 5520 -780 1 1352 279 0 0 0 chr6 100616928 100616959 -48900078 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1352 310 290 25 93 chr6 100617524 100617642 -48899395 - PB1D10 SINE Alu -5 112 3 1 1352 615 263 85 11 chr6 100617777 100617954 -48899083 - B3A SINE B2 -6 192 3 1 1352 25 0 0 0 chr6 100618133 100618158 -48898879 + AT_rich Low_complexity Low_complexity 1 25 0 1 1352 531 289 7 27 chr6 100618197 100618343 -48898694 - RSINE1 SINE B4 -21 144 2 1 1352 887 280 70 7 chr6 100618866 100619139 -48897898 + B4 SINE B4 3 292 0 1 1352 342 67 0 0 chr6 100619621 100619666 -48897371 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1352 561 232 29 14 chr6 100620026 100620166 -48896871 + Tigger7 DNA MER2_type 2350 2491 0 1 1352 289 317 92 12 chr6 100621464 100621627 -48895410 + MIR SINE MIR 74 249 -13 1 1352 220 208 0 20 chr6 100621704 100621753 -48895284 + C-rich Low_complexity Low_complexity 5 52 0 1 1352 2820 121 2 23 chr6 100622128 100622558 -48894479 + MTC LTR MaLR 1 421 0 1 1352 500 274 0 70 chr6 100622593 100622712 -48894325 + B1F SINE Alu 1 110 -39 1 1352 1246 243 101 18 chr6 100622712 100623098 -48893939 - MTD LTR MaLR 0 419 2 1 1352 500 274 0 70 chr6 100623098 100623135 -48893902 + B1F SINE Alu 111 146 -3 1 1352 297 0 0 0 chr6 100623783 100623816 -48893221 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1352 423 0 0 0 chr6 100623816 100623862 -48893175 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1352 1178 194 34 0 chr6 100624012 100624218 -48892819 - B3 SINE B2 0 216 4 1 1352 327 49 0 0 chr6 100624324 100624365 -48892672 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 2 1352 2004 239 127 19 chr6 100624653 100625134 -48891903 - Lx6 LINE L1 -31 7429 6897 2 1352 574 280 14 0 chr6 100625409 100625552 -48891485 - B1F SINE Alu -2 147 3 2 1352 390 284 9 9 chr6 100625929 100626039 -48890998 - PB1D7 SINE Alu -5 115 6 2 1352 535 211 87 48 chr6 100626125 100626276 -48890761 + ORR1C2 LTR MaLR 1 150 -224 2 1352 1245 48 0 0 chr6 100626276 100626423 -48890614 + B1_Mus2 SINE Alu 1 147 0 2 1352 718 226 13 40 chr6 100626423 100626699 -48890338 + ORR1C2 LTR MaLR 144 387 -7 2 1352 865 274 113 17 chr6 100627152 100627498 -48889539 - MTE2b LTR MaLR 0 379 1 2 1352 1210 221 53 56 chr6 100627505 100627860 -48889177 + ORR1E LTR MaLR 1 354 -5 2 1352 369 301 186 6 chr6 100628020 100628187 -48888850 + LTR16A1 LTR ERVL 259 455 -1 2 1352 185 0 0 39 chr6 100628348 100628374 -48888663 + (CAAAAA)n Simple_repeat Simple_repeat 1 25 0 2 1352 354 197 0 0 chr6 100628534 100628600 -48888437 + MTE2b LTR MaLR 15 80 -299 2 1352 224 100 0 24 chr6 100628611 100628652 -48888385 + (TGG)n Simple_repeat Simple_repeat 2 41 0 2 1352 1039 247 40 14 chr6 100628652 100628927 -48888110 + MTE2b LTR MaLR 82 363 -16 2 1352 242 274 0 35 chr6 100628976 100629063 -48887974 + L1M5 LINE L1 5672 5755 -407 2 1352 301 103 6 69 chr6 100629078 100629161 -48887876 + B2_Mm2 SINE B2 2 74 -124 2 1352 5848 84 27 10 chr6 100629162 100629743 -48887294 + L1VL2 LINE L1 220 812 -5523 2 1352 6256 73 14 14 chr6 100629743 100630572 -48886465 + L1Md_F2 LINE L1 5742 6570 -12 2 1352 5983 81 43 7 chr6 100630572 100631549 -48885488 + L1VL2 LINE L1 813 1826 -1789 2 1352 933 84 12 55 chr6 100632464 100632628 -48884409 + B2_Mm2 SINE B2 35 191 -4 2 1352 306 256 47 35 chr6 100632633 100632718 -48884319 + B4A SINE B4 3 88 -204 2 1352 241 354 12 12 chr6 100632795 100632878 -48884159 + B4 SINE B4 125 207 -85 2 1352 886 217 60 76 chr6 100632913 100633253 -48883784 + RLTR26 LTR ERVK 65 430 -212 2 1352 682 264 0 7 chr6 100633761 100633910 -48883127 - B1_Mur1 SINE Alu -1 148 1 2 1352 621 291 2 10 chr6 100633916 100634100 -48882937 - B3A SINE B2 -28 188 11 2 1352 366 123 0 0 chr6 100634182 100634239 -48882798 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1352 355 216 0 0 chr6 100634248 100634322 -48882715 + PB1D10 SINE Alu 36 109 -8 2 1352 295 246 29 14 chr6 100634343 100634413 -48882624 + ID SINE ID 6 76 -148 2 1352 280 284 0 36 chr6 100634358 100634442 -48882595 + BC1_Mm scRNA scRNA 21 101 -51 2 1352 322 304 96 7 chr6 100634516 100634652 -48882385 + MER2 DNA MER2_type 23 170 -175 2 1352 268 203 31 0 chr6 100634676 100634740 -48882297 - PB1D10 SINE Alu 0 117 52 2 1352 238 271 0 0 chr6 100635554 100635613 -48881424 + ID2 SINE ID 23 81 -2 2 1352 245 109 0 21 chr6 100636320 100636367 -48880670 + (TTAG)n Simple_repeat Simple_repeat 3 48 0 2 1352 893 140 0 0 chr6 100636369 100636505 -48880532 - B1_Mus1 SINE Alu -7 141 6 2 1352 950 234 27 5 chr6 100636515 100636734 -48880303 - B4 SINE B4 -60 232 9 2 1352 736 106 0 0 chr6 100636879 100636992 -48880045 + B2_Mm1t SINE B2 81 193 0 2 1352 449 208 148 0 chr6 100637711 100637812 -48879225 - MTEa LTR MaLR -260 119 4 2 1352 508 331 88 28 chr6 100639006 100639438 -48877599 - L1ME1 LINE L1 -15 6164 5707 2 1352 333 0 0 0 chr6 100639510 100639547 -48877490 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2 1352 2625 46 60 27 chr6 100639981 100640316 -48876721 + ORR1A1 LTR MaLR 1 346 0 2 1352 876 240 10 39 chr6 100640339 100640547 -48876490 - B3 SINE B2 -13 203 2 2 1352 430 355 34 41 chr6 100640579 100640873 -48876164 - B4A SINE B4 0 292 1 2 1352 439 307 58 0 chr6 100641859 100641996 -48875041 - MLT1D LTR MaLR -46 459 315 2 1352 311 309 0 0 chr6 100641997 100642085 -48874952 + CT-rich Low_complexity Low_complexity 1 88 0 2 1352 657 227 49 14 chr6 100642085 100642228 -48874809 - B1_Mur1 SINE Alu -1 148 1 2 1352 214 288 0 33 chr6 100642228 100642240 -48874797 + polypyrimidine Low_complexity Low_complexity 2 13 0 2 1352 308 272 25 0 chr6 100642324 100642405 -48874632 - B4A SINE B4 -208 84 2 2 1352 411 240 36 55 chr6 100642635 100642660 -48874377 + MTEa LTR MaLR 1 25 -354 2 1352 2269 69 64 61 chr6 100642660 100642986 -48874051 - ORR1A2 LTR MaLR 0 327 1 2 1352 411 240 36 55 chr6 100642986 100643070 -48873967 + MTEa LTR MaLR 26 108 -271 2 1352 814 250 48 9 chr6 100643081 100643291 -48873746 + MTEa LTR MaLR 154 371 -8 2 1352 229 398 0 0 chr6 100643304 100643387 -48873650 - ID2 SINE ID 0 83 1 2 1352 274 354 0 0 chr6 100643479 100643561 -48873476 - B4A SINE B4 -14 278 197 2 1352 737 253 20 30 chr6 100643571 100643585 -48873452 - B3A SINE B2 0 198 185 2 1352 216 0 0 0 chr6 100643585 100643609 -48873428 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1352 868 225 6 23 chr6 100643609 100643794 -48873243 - B3 SINE B2 -14 184 1 2 1352 415 335 25 41 chr6 100643796 100643992 -48873045 - B4A SINE B4 -76 216 24 2 1352 616 264 205 0 chr6 100644329 100644568 -48872469 - B4 SINE B4 -4 288 1 2 1352 380 294 72 131 chr6 100644761 100645053 -48871984 - MLT1C LTR MaLR 0 467 182 2 1352 250 213 12 118 chr6 100645053 100645138 -48871899 - ID2 SINE ID -3 80 5 2 1352 380 294 72 131 chr6 100645138 100645233 -48871804 - MLT1C LTR MaLR -286 181 103 2 1352 356 302 0 19 chr6 100646237 100646345 -48870692 + PB1D10 SINE Alu 4 109 -8 2 1352 481 229 25 0 chr6 100646523 100646641 -48870396 - B4 SINE B4 -62 230 110 2 1352 580 314 132 26 chr6 100646902 100647165 -48869872 - L1MC1 LINE L1 -419 6089 5807 2 1352 1112 165 252 29 chr6 100647165 100647471 -48869566 - ORR1D1 LTR MaLR 0 374 1 2 1352 580 315 137 26 chr6 100647471 100647674 -48869363 - L1MC1 LINE L1 -2364 5806 5573 2 1352 581 200 75 0 chr6 100647695 100647815 -48869222 - B3 SINE B2 -87 129 1 2 1352 1124 279 110 112 chr6 100647824 100648725 -48868312 - L1MC1 LINE L1 -755 5566 4668 2 1352 360 0 0 0 chr6 100648746 100648786 -48868251 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1352 675 288 6 0 chr6 100648788 100648951 -48868086 - B3A SINE B2 -34 164 1 2 1352 1327 278 191 23 chr6 100648960 100649733 -48867304 - L1MC1 LINE L1 -1769 4552 3650 2 1352 207 0 0 0 chr6 100649976 100649999 -48867038 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1352 670 305 44 8 chr6 100649999 100650250 -48866787 - Lx8 LINE L1 -93 7380 7121 2 1352 396 208 117 45 chr6 100650251 100650362 -48866675 + ID_B1 SINE B4 99 217 -7 2 1352 241 26 53 0 chr6 100650385 100650423 -48866614 + (TTA)n Simple_repeat Simple_repeat 1 40 0 2 1352 974 152 11 17 chr6 100650427 100650607 -48866430 - B2_Mm2 SINE B2 -15 180 2 2 1352 387 0 0 0 chr6 100650607 100650650 -48866387 + (TTA)n Simple_repeat Simple_repeat 3 45 0 2 1352 1402 307 97 39 chr6 100650651 100651426 -48865611 - L1MC1 LINE L1 -5478 1030 211 2 1352 360 0 0 0 chr6 100651486 100651526 -48865511 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1352 2199 79 3 33 chr6 100651908 100652237 -48864800 - ORR1A2 LTR MaLR -8 319 1 2 1352 781 211 0 13 chr6 100652289 100652438 -48864599 + B1_Mur1 SINE Alu 1 147 -2 2 1352 413 186 93 0 chr6 100652636 100652722 -48864315 + ORR1D1 LTR MaLR 253 346 -28 2 1352 660 229 49 32 chr6 100652784 100652969 -48864068 + B4 SINE B4 101 288 -4 2 1352 270 314 6 42 chr6 100654355 100654521 -48862516 + (TGAG)n Simple_repeat Simple_repeat 2 161 0 2 1352 264 229 14 0 chr6 100654663 100654733 -48862304 + CT-rich Low_complexity Low_complexity 1 71 0 2 1352 22 0 0 0 chr6 100654806 100654828 -48862209 + GC_rich Low_complexity Low_complexity 1 22 0 2 1352 24 32 0 0 chr6 100655067 100655098 -48861939 + GC_rich Low_complexity Low_complexity 1 31 0 2 1352 406 207 134 9 chr6 100656150 100656262 -48860775 - RSINE1 SINE B4 -31 134 9 2 1352 354 264 366 5 chr6 100656718 100656777 -48860260 - B4A SINE B4 0 292 217 2 1352 342 0 0 0 chr6 100656777 100656815 -48860222 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2 1352 354 264 366 5 chr6 100656815 100656968 -48860069 - B4A SINE B4 -76 216 4 2 1352 183 42 0 0 chr6 100657188 100657212 -48859825 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2 1352 191 217 0 108 chr6 100658218 100658311 -48858726 - L4 LINE RTE 0 2029 1947 2 1352 339 303 20 0 chr6 100658384 100658483 -48858554 - L4 LINE RTE -190 1839 1739 2 1352 366 327 74 97 chr6 100658652 100658950 -48858087 + B4 SINE B4 2 292 0 2 1352 456 285 85 13 chr6 100659319 100659472 -48857565 - RSINE1 SINE B4 0 165 2 2 1352 369 0 0 0 chr6 100659946 100659987 -48857050 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1352 243 0 0 0 chr6 100659987 100660013 -48857024 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 1352 681 265 7 33 chr6 100660019 100660171 -48856866 - RSINE1 SINE B4 -14 151 4 2 1352 220 27 0 51 chr6 100660190 100660229 -48856808 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 2 1352 284 325 33 16 chr6 100660293 100660415 -48856622 + L2 LINE L2 2721 2844 -575 2 1352 477 0 0 0 chr6 100660415 100660468 -48856569 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1352 1235 149 235 0 chr6 100661303 100661584 -48855453 + ORR1B2 LTR MaLR 17 363 -4 2 1352 461 286 0 16 chr6 100661877 100661998 -48855039 + B1_Mur1 SINE Alu 2 120 -29 2 1352 239 302 0 0 chr6 100662392 100662445 -48854592 - ID4 SINE ID -19 64 12 2 1352 982 250 70 73 chr6 100662495 100662853 -48854184 - L1MC3 LINE L1 -934 6851 6495 2 1353 1564 231 29 32 chr6 100663391 100663767 -48853270 - MTEa LTR MaLR 0 379 5 2 1353 240 111 0 0 chr6 100664699 100664744 -48852293 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1353 782 228 180 69 chr6 100664747 100664884 -48852153 - MTEb LTR MaLR -8 371 211 2 1353 500 45 15 0 chr6 100664884 100664951 -48852086 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1353 782 228 180 69 chr6 100664951 100665147 -48851890 - MTEb LTR MaLR -169 210 2 2 1353 186 273 0 0 chr6 100665332 100665376 -48851661 - MIR SINE MIR -62 146 103 2 1353 774 205 223 4 chr6 100666389 100666658 -48850379 - MTD LTR MaLR -46 373 46 2 1353 230 315 0 0 chr6 100667581 100667635 -48849402 + RSINE1 SINE B4 110 163 -2 2 1353 373 284 14 56 chr6 100667873 100668151 -48848886 - RMER15 LTR ERVL -40 535 88 2 1353 241 217 14 42 chr6 100668219 100668291 -48848746 + C-rich Low_complexity Low_complexity 5 74 0 2 1353 433 161 21 3 chr6 100668295 100668388 -48848649 - B1_Mus2 SINE Alu -12 137 46 2 1353 518 143 187 0 chr6 100668394 100668485 -48848552 - B1_Mus1 SINE Alu -39 109 2 3 1353 1019 193 43 14 chr6 100668496 100668706 -48848331 - B3 SINE B2 0 216 1 3 1353 256 264 0 0 chr6 100668793 100668846 -48848191 + polypurine Low_complexity Low_complexity 3 55 0 3 1353 189 0 0 0 chr6 100669173 100669194 -48847843 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1353 245 248 54 134 chr6 100669485 100669632 -48847405 + MLT1C LTR MaLR 63 197 -270 3 1353 411 263 32 0 chr6 100669632 100669727 -48847310 + B1F1 SINE Alu 2 99 -50 3 1353 423 0 0 0 chr6 100669759 100669806 -48847231 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 3 1353 302 264 102 23 chr6 100669947 100670075 -48846962 + MLT1C LTR MaLR 289 426 -41 3 1353 732 263 105 58 chr6 100670581 100670666 -48846371 + B4A SINE B4 2 109 -183 3 1353 222 118 0 0 chr6 100670666 100670700 -48846337 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1353 732 263 105 58 chr6 100670700 100670872 -48846165 + B4A SINE B4 110 271 -21 3 1353 378 61 0 0 chr6 100670872 100670921 -48846116 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1353 296 236 20 92 chr6 100671884 100671982 -48845055 - L1MB7 LINE L1 -68 6106 6016 3 1353 920 251 69 36 chr6 100672005 100672340 -48844697 - L1MB7 LINE L1 -318 5866 5521 3 1353 494 200 40 0 chr6 100672438 100672538 -48844499 - B1F SINE Alu -12 137 34 3 1353 185 94 31 0 chr6 100672546 100672578 -48844459 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 3 1353 282 284 12 12 chr6 100672701 100672783 -48844254 - MER113 DNA MER1_type -306 215 134 3 1353 778 197 7 0 chr6 100673282 100673419 -48843618 + B1_Mur1 SINE Alu 3 140 -9 3 1353 513 47 0 0 chr6 100673432 100673496 -48843541 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1353 438 257 59 10 chr6 100673665 100673767 -48843270 - RSINE1 SINE B4 -14 151 45 3 1353 27 0 0 0 chr6 100673830 100673857 -48843180 + AT_rich Low_complexity Low_complexity 1 27 0 3 1353 939 50 0 0 chr6 100674712 100674833 -48842204 + (TG)n Simple_repeat Simple_repeat 2 122 0 3 1353 377 218 103 0 chr6 100675009 100675087 -48841950 + PB1D10 SINE Alu 5 90 -27 3 1353 240 35 0 0 chr6 100675094 100675123 -48841914 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 3 1353 818 270 122 53 chr6 100675123 100675385 -48841652 + B4 SINE B4 13 292 0 3 1353 229 246 43 14 chr6 100675975 100676045 -48840992 - ID4_ SINE ID -9 74 3 3 1353 324 143 0 0 chr6 100676751 100676807 -48840230 + (GGA)n Simple_repeat Simple_repeat 2 57 0 3 1353 236 130 22 0 chr6 100677620 100677666 -48839371 + GA-rich Low_complexity Low_complexity 2 48 0 3 1353 607 221 0 188 chr6 100677677 100677844 -48839193 + B3A SINE B2 2 133 -65 3 1353 456 19 0 0 chr6 100677844 100677897 -48839140 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1353 288 0 0 0 chr6 100677897 100677928 -48839109 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1353 607 221 0 188 chr6 100677928 100677982 -48839055 + B3A SINE B2 134 181 -17 3 1353 564 168 0 32 chr6 100678076 100678261 -48838776 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1353 309 111 0 0 chr6 100678290 100678335 -48838702 + HAL1-3A_ME LINE L1 1976 2020 -838 3 1353 243 211 0 0 chr6 100678339 100678429 -48838608 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 1353 3423 43 0 0 chr6 100678790 100679189 -48837848 - L1_Mus1 LINE L1 -305 6262 5864 3 1353 2426 39 0 10 chr6 100679189 100679607 -48837430 + L1_Mus1 LINE L1 6275 6567 0 3 1353 229 278 28 0 chr6 100680294 100680366 -48836671 - ID4 SINE ID -9 74 1 3 1353 300 148 0 0 chr6 100680468 100680529 -48836508 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1353 385 282 0 72 chr6 100680529 100680640 -48836397 - RSINE1 SINE B4 -28 137 35 3 1353 1114 246 25 36 chr6 100681105 100681379 -48835658 - B4 SINE B4 -6 286 16 3 1353 219 247 151 0 chr6 100681430 100681503 -48835534 + L2a LINE L2 3343 3426 0 3 1353 248 254 0 0 chr6 100683109 100683172 -48833865 + T-rich Low_complexity Low_complexity 1 63 0 3 1353 504 248 160 63 chr6 100683537 100683774 -48833263 + B4 SINE B4 2 261 -31 3 1353 1103 181 0 186 chr6 100685441 100685720 -48831317 + RMER19B LTR ERVK 1 227 -675 3 1353 2128 166 71 24 chr6 100685741 100686161 -48830876 + RMER19B LTR ERVK 339 778 -124 3 1353 24 32 0 0 chr6 100686461 100686492 -48830545 + AT_rich Low_complexity Low_complexity 1 31 0 3 1353 2166 47 0 11 chr6 100686492 100686771 -48830266 - L1Md_F3 LINE L1 -1 6583 6308 3 1353 2631 42 2 200 chr6 100686777 100687258 -48829779 - RLTR10 LTR ERVK -4 386 1 3 1353 8848 24 1 1 chr6 100687260 100688255 -48828782 - RLTR10-int LTR ERVK -3 1984 990 3 1353 408 250 39 15 chr6 100688337 100688467 -48828570 - RLTR10-int LTR ERVK -5987 1594 1462 3 1353 4563 29 1 19 chr6 100688531 100689476 -48827561 - RLTR10-int LTR ERVK -989 998 1 3 1353 2621 42 2 203 chr6 100689482 100689965 -48827072 - RLTR10 LTR ERVK -4 386 1 3 1353 6221 33 3 1 chr6 100689965 100691087 -48825950 - L1Md_F2 LINE L1 -268 6314 5192 3 1353 356 301 194 53 chr6 100691374 100691637 -48825400 + MLT1F LTR MaLR 173 472 -76 3 1353 866 219 93 5 chr6 100691638 100691831 -48825206 + B3 SINE B2 2 211 -5 3 1353 458 336 20 7 chr6 100691837 100691984 -48825053 + B1F SINE Alu 1 149 0 3 1353 251 270 32 0 chr6 100691987 100692050 -48824987 + ID4 SINE ID 2 66 -17 3 1353 729 231 105 0 chr6 100692125 100692268 -48824769 + RSINE1 SINE B4 6 163 -2 3 1353 180 0 0 0 chr6 100692271 100692291 -48824746 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1353 653 341 104 27 chr6 100692437 100692802 -48824235 + MLT1G3 LTR MaLR 158 550 -45 3 1353 949 195 91 5 chr6 100693128 100693314 -48823723 - B3 SINE B2 -5 211 10 3 1353 526 271 0 33 chr6 100693457 100693579 -48823458 - PB1D9 SINE Alu 0 120 3 3 1353 304 301 154 51 chr6 100693579 100693624 -48823413 - B4 SINE B4 -60 206 40 3 1353 513 298 99 65 chr6 100694229 100694491 -48822546 + B4A SINE B4 3 273 -19 3 1353 189 147 0 0 chr6 100694578 100694612 -48822425 + (CACG)n Simple_repeat Simple_repeat 2 35 0 3 1353 1136 75 0 0 chr6 100694687 100694824 -48822213 + B1_Mus1 SINE Alu 2 138 -10 3 1353 788 10 0 20 chr6 100694824 100694922 -48822115 + (GAAA)n Simple_repeat Simple_repeat 2 97 0 3 1353 639 299 74 42 chr6 100694985 100695357 -48821680 - MER57E1 LTR ERV1 -17 419 20 3 1353 1465 206 138 3 chr6 100695357 100695683 -48821354 - ORR1D2 LTR MaLR 0 370 1 3 1353 1139 134 29 38 chr6 100696383 100696593 -48820444 + URR1A DNA MER1_type 19 226 0 3 1353 237 318 101 31 chr6 100696593 100696736 -48820301 + Kanga1c DNA Tc2 97 250 -479 3 1353 2000 179 72 3 chr6 100696869 100697260 -48819777 + MTD LTR MaLR 2 419 0 3 1353 293 219 168 102 chr6 100697351 100697488 -48819549 - MER58B DNA MER1_type -1 340 195 3 1353 353 267 89 0 chr6 100697549 100697650 -48819387 - MER58B DNA MER1_type -130 211 102 3 1353 378 239 109 124 chr6 100697655 100697856 -48819181 - B3A SINE B2 0 198 1 3 1353 337 182 207 9 chr6 100698076 100698187 -48818850 - Lx6 LINE L1 -15 7445 7313 3 1353 542 287 72 42 chr6 100698203 100698538 -48818499 + L1MC2 LINE L1 5817 6161 -183 3 1353 734 250 77 34 chr6 100698547 100698754 -48818283 + B3 SINE B2 1 216 0 3 1353 794 168 72 7 chr6 100698805 100698943 -48818094 + B1_Mur2 SINE Alu 1 147 -2 3 1353 266 252 57 66 chr6 100699065 100699171 -48817866 + L1MC2 LINE L1 6234 6338 -6 3 1353 738 175 211 0 chr6 100699189 100699360 -48817677 + B3 SINE B2 6 212 -4 3 1353 1002 181 18 83 chr6 100699549 100699766 -48817271 + B3 SINE B2 14 216 0 3 1353 441 291 29 0 chr6 100699806 100699909 -48817128 - PB1D10 SINE Alu -5 112 7 3 1353 1393 81 27 0 chr6 100700937 100701122 -48815915 - B2_Mm2 SINE B2 -4 191 2 3 1353 38536 31 1 1 chr6 100701128 100708190 -48808847 - L1Md_T LINE L1 0 6585 1 3 1353 254 288 91 52 chr6 100708246 100708323 -48808714 + ID4_ SINE ID 3 82 -1 3 1353 276 77 0 0 chr6 100708659 100708698 -48808339 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 3 1353 414 0 0 0 chr6 100708927 100708973 -48808064 + (T)n Simple_repeat Simple_repeat 1 46 0 3 1353 260 296 0 0 chr6 100709094 100709165 -48807872 + MADE2 DNA Mariner 1 71 -9 3 1353 919 210 34 11 chr6 100709426 100709631 -48807406 - B3A SINE B2 -6 210 10 3 1353 941 276 74 39 chr6 100710367 100710676 -48806361 + ORR1E LTR MaLR 36 355 -4 3 1353 609 251 273 5 chr6 100710809 100711025 -48806012 - B4A SINE B4 -17 275 2 3 1353 240 111 0 0 chr6 100711150 100711186 -48805851 + (TTTTC)n Simple_repeat Simple_repeat 1 36 0 3 1353 933 61 61 0 chr6 100711187 100711318 -48805719 - B2_Mm2 SINE B2 -2 193 55 3 1353 1475 70 16 0 chr6 100711506 100711693 -48805344 + B2_Mm2 SINE B2 3 192 -3 3 1353 595 315 72 54 chr6 100712040 100712321 -48804716 - RMER5 LTR ERV1 0 534 248 3 1353 1685 185 100 19 chr6 100712321 100712690 -48804347 + RLTR20C LTR ERVK 2 400 -134 3 1353 1319 80 11 0 chr6 100712691 100712866 -48804171 + B2_Mm1t SINE B2 3 179 -14 3 1353 423 80 28 2 chr6 100712883 100712991 -48804046 + B2_Mm2 SINE B2 47 193 -2 3 1353 287 64 255 0 chr6 100712995 100713042 -48803995 + RLTR20C LTR ERVK 400 458 -93 3 1353 532 224 10 0 chr6 100713086 100713184 -48803853 + RLTR20C LTR ERVK 480 578 0 3 1353 463 309 58 10 chr6 100713184 100713390 -48803647 - RMER5 LTR ERV1 -286 248 33 3 1353 489 300 81 81 chr6 100714094 100714143 -48802894 - MLT1K LTR MaLR -2 593 545 3 1353 1134 227 113 65 chr6 100714143 100714496 -48802541 + ORR1D2 LTR MaLR 1 370 0 3 1353 489 300 81 81 chr6 100714496 100714718 -48802319 - MLT1K LTR MaLR -51 544 322 3 1353 762 134 0 25 chr6 100714757 100714879 -48802158 + B1_Mur2 SINE Alu 31 149 0 3 1353 290 304 149 0 chr6 100714884 100715045 -48801992 + L1M4b LINE L1 2 186 -7148 3 1353 5069 143 30 32 chr6 100715209 100716189 -48800848 - RMER12 LTR ERVK -151 1171 1 3 1353 387 293 169 14 chr6 100716194 100716336 -48800701 + L1M4b LINE L1 240 403 -6931 3 1353 417 314 8 16 chr6 100716373 100716499 -48800538 + RSINE1 SINE B4 26 150 -15 3 1353 481 284 37 0 chr6 100716768 100716877 -48800160 + RSINE1 SINE B4 11 123 -42 3 1353 432 0 0 0 chr6 100716898 100716946 -48800091 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1353 667 306 45 0 chr6 100717109 100717266 -48799771 + RSINE1 SINE B4 2 165 0 3 1353 231 292 121 100 chr6 100717266 100717299 -48799738 + B2_Mm2 SINE B2 1 194 -1 3 1353 239 0 32 0 chr6 100718355 100718386 -48798651 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 4 1353 593 242 193 9 chr6 100718511 100718744 -48798293 + B4A SINE B4 1 276 -16 4 1353 384 269 48 56 chr6 100718744 100718870 -48798167 + B1F SINE Alu 24 148 -1 4 1353 561 88 0 0 chr6 100719182 100719262 -48797775 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1353 678 191 16 18 chr6 100719303 100719435 -48797602 + B1_Mur2 SINE Alu 14 141 -8 4 1353 237 108 0 0 chr6 100719435 100719472 -48797565 + (TTAA)n Simple_repeat Simple_repeat 4 40 0 4 1353 2273 94 6 0 chr6 100719592 100719910 -48797127 + ORR1A4 LTR MaLR 1 320 -9 4 1353 225 0 0 0 chr6 100719910 100719935 -48797102 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 4 1353 399 127 0 0 chr6 100720072 100720135 -48796902 + (TGG)n Simple_repeat Simple_repeat 3 65 0 4 1353 303 277 0 41 chr6 100720340 100720438 -48796599 - B1F2 SINE Alu -2 147 54 4 1353 743 230 79 0 chr6 100720573 100720725 -48796312 + B3 SINE B2 2 165 -51 4 1353 387 304 39 39 chr6 100721039 100721169 -48795868 + B3 SINE B2 67 196 -20 4 1353 414 0 0 0 chr6 100721169 100721215 -48795822 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1353 257 0 30 0 chr6 100721215 100721247 -48795790 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1353 473 302 111 44 chr6 100721247 100721369 -48795668 + L1MC4a LINE L1 6643 6773 -1109 4 1353 2556 108 12 63 chr6 100721369 100721784 -48795253 + ORR1B1 LTR MaLR 1 394 0 4 1353 473 302 111 44 chr6 100721784 100721886 -48795151 + L1MC4a LINE L1 6774 6882 -1000 4 1353 226 300 12 12 chr6 100722037 100722118 -48794919 + B4 SINE B4 126 206 -86 4 1353 379 319 73 40 chr6 100722167 100722209 -48794828 + RSINE1 SINE B4 11 47 -118 4 1353 982 170 315 21 chr6 100722209 100722498 -48794539 - ORR1D1 LTR MaLR 0 374 1 4 1353 379 319 73 40 chr6 100722498 100722605 -48794432 + RSINE1 SINE B4 48 165 0 4 1353 193 200 140 35 chr6 100722737 100722794 -48794243 - L2b LINE L2 -64 3311 3249 4 1353 336 299 9 0 chr6 100723090 100723197 -48793840 + L1MC4a LINE L1 7033 7140 -742 4 1353 276 262 77 51 chr6 100723208 100723299 -48793738 + PB1D10 SINE Alu 6 99 -50 4 1353 251 283 141 0 chr6 100723411 100723510 -48793527 + L1MC4a LINE L1 7269 7381 -661 4 1353 24 0 0 0 chr6 100723723 100723747 -48793290 + AT_rich Low_complexity Low_complexity 1 24 0 4 1353 363 214 10 110 chr6 100724170 100724270 -48792767 + PB1D9 SINE Alu 31 120 0 4 1353 186 43 0 0 chr6 100724272 100724295 -48792742 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1353 720 278 0 18 chr6 100724549 100724714 -48792323 + RSINE1 SINE B4 2 163 -2 4 1353 773 232 88 34 chr6 100724766 100724971 -48792066 + B3 SINE B2 1 216 0 4 1353 1488 236 35 24 chr6 100725321 100725659 -48791378 + MTD LTR MaLR 1 342 -77 4 1353 1174 57 0 0 chr6 100725662 100725802 -48791235 + B1_Mm SINE Alu 1 140 -7 4 1353 475 299 68 17 chr6 100726028 100726342 -48790695 + L1M4 LINE L1 2590 2909 -3237 4 1353 526 240 74 74 chr6 100726657 100726685 -48790352 - B2_Mm2 SINE B2 0 195 163 4 1353 348 43 0 0 chr6 100726685 100726731 -48790306 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1353 643 240 74 74 chr6 100726731 100726891 -48790146 - B3A SINE B2 -33 162 7 4 1353 1480 34 34 6 chr6 100727195 100727374 -48789663 - B2_Mm2 SINE B2 -10 185 2 4 1353 1693 161 37 21 chr6 100727391 100727730 -48789307 - RLTR11A LTR ERVK -3 525 179 4 1353 321 135 0 0 chr6 100727730 100727782 -48789255 + (TCC)n Simple_repeat Simple_repeat 2 53 0 4 1353 1185 151 146 14 chr6 100727790 100728039 -48788998 - RLTR11A LTR ERVK -272 256 1 4 1353 3304 212 61 15 chr6 100728107 100728960 -48788077 - RMER1B Other Other -15 1051 15 4 1353 656 250 0 0 chr6 100729061 100729181 -48787856 + RSINE1 SINE B4 1 120 -45 4 1353 329 246 16 17 chr6 100729270 100729358 -48787679 + PB1D10 SINE Alu 34 120 -29 4 1353 180 111 0 0 chr6 100729484 100729511 -48787526 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1353 1445 118 20 32 chr6 100730120 100730366 -48786671 - ORR1C2 LTR MaLR 0 384 142 4 1353 243 61 0 0 chr6 100730394 100730427 -48786610 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1353 309 287 63 42 chr6 100730435 100730577 -48786460 - RSINE1 SINE B4 -18 147 3 4 1353 316 272 169 59 chr6 100730581 100730911 -48786126 - MER34A1 LTR ERV1 -210 377 2 4 1353 291 213 39 26 chr6 100731091 100731168 -48785869 + Charlie18a DNA MER1_type 24 101 -241 4 1353 570 139 91 18 chr6 100731170 100731280 -48785757 - PB1D9 SINE Alu -2 118 1 4 1353 847 153 27 20 chr6 100731383 100731530 -48785507 - B1_Mur3 SINE Alu 0 149 2 4 1353 903 279 51 57 chr6 100731746 100732118 -48784919 - MLT1A LTR MaLR -4 370 1 4 1353 270 0 0 0 chr6 100732338 100732368 -48784669 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1353 391 211 25 133 chr6 100733367 100733487 -48783550 + MT2B LTR ERVL 151 257 -344 4 1353 788 194 14 0 chr6 100733388 100733532 -48783505 + B1_Mur4 SINE Alu 5 150 0 4 1353 269 235 14 14 chr6 100733945 100734014 -48783023 + ID2 SINE ID 1 69 -14 4 1353 889 127 41 21 chr6 100734057 100734202 -48782835 + B1_Mus1 SINE Alu 1 148 0 4 1353 769 279 22 6 chr6 100734212 100734392 -48782645 + B4 SINE B4 106 288 -4 4 1353 360 0 0 0 chr6 100734453 100734493 -48782544 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1353 637 143 134 0 chr6 100734604 100734716 -48782321 + B3 SINE B2 68 194 -22 4 1353 2160 117 32 12 chr6 100734718 100735063 -48781974 - ORR1B1 LTR MaLR -2 392 41 4 1353 1229 77 10 107 chr6 100735386 100735591 -48781446 + B2_Mm1t SINE B2 1 185 -8 4 1353 318 326 22 0 chr6 100735628 100735720 -48781317 + PB1D10 SINE Alu 4 97 -20 4 1353 290 319 131 51 chr6 100735905 100736154 -48780883 + B4A SINE B4 5 272 -20 4 1353 351 0 0 0 chr6 100736186 100736225 -48780812 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1353 600 53 0 0 chr6 100736253 100736329 -48780708 + (GAAAA)n Simple_repeat Simple_repeat 1 76 0 4 1353 512 271 0 97 chr6 100736350 100736505 -48780532 + RSINE1 SINE B4 8 147 -18 4 1353 267 31 0 0 chr6 100736509 100736541 -48780496 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1353 1853 121 53 72 chr6 100736652 100737069 -48779968 - RMER17C LTR ERVK -1 409 1 4 1353 25 0 0 0 chr6 100737295 100737320 -48779717 + AT_rich Low_complexity Low_complexity 1 25 0 4 1353 227 31 0 30 chr6 100737794 100737827 -48779210 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 4 1353 1740 185 114 6 chr6 100737830 100738189 -48778848 + MTD LTR MaLR 22 419 0 4 1353 639 119 0 64 chr6 100738598 100738786 -48778251 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 1353 228 35 0 0 chr6 100738830 100738859 -48778178 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1353 1142 51 7 0 chr6 100738859 100738996 -48778041 - B1_Mus1 SINE Alu -9 139 2 4 1353 183 156 0 0 chr6 100739000 100739032 -48778005 + T-rich Low_complexity Low_complexity 1 32 0 4 1353 478 328 156 32 chr6 100739435 100739750 -48777287 - ORR1E LTR MaLR -5 354 1 4 1353 2097 148 41 11 chr6 100740142 100740505 -48776532 - ORR1C1 LTR MaLR 0 378 5 4 1353 673 246 92 12 chr6 100740748 100740896 -48776141 + B3A SINE B2 6 166 -32 4 1353 180 125 0 0 chr6 100740896 100740928 -48776109 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1353 673 246 92 12 chr6 100740928 100740952 -48776085 + B3A SINE B2 167 192 -6 4 1353 1950 157 46 25 chr6 100741127 100741493 -48775544 + ORR1C1 LTR MaLR 5 378 0 4 1353 1189 63 0 0 chr6 100741697 100741840 -48775197 + B1_Mus2 SINE Alu 5 147 0 4 1353 207 69 0 0 chr6 100742065 100742094 -48774943 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1353 1450 193 7 52 chr6 100742512 100742818 -48774219 - B4A SINE B4 0 292 1 4 1353 894 174 210 0 chr6 100742949 100743116 -48773921 + B3 SINE B2 1 202 -14 4 1353 303 85 0 0 chr6 100743816 100743863 -48773174 + (CTGTG)n Simple_repeat Simple_repeat 2 48 0 4 1353 2239 102 17 9 chr6 100743866 100744213 -48772824 - RLTR15 LTR ERVK -4 355 6 4 1353 630 122 0 0 chr6 100744568 100744666 -48772371 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 4 1353 387 0 0 0 chr6 100744681 100744724 -48772313 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1353 307 202 139 0 chr6 100744747 100744778 -48772259 - B1F2 SINE Alu -51 98 9 4 1353 346 104 0 0 chr6 100744778 100744826 -48772211 - ID_B1 SINE B4 -87 137 90 4 1353 315 0 0 0 chr6 100745056 100745091 -48771946 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1353 680 302 123 8 chr6 100745368 100745557 -48771480 - B4 SINE B4 0 292 75 4 1353 192 40 0 0 chr6 100745557 100745582 -48771455 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 1353 432 0 0 0 chr6 100745583 100745631 -48771406 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1353 680 302 123 8 chr6 100745631 100745699 -48771338 - B4 SINE B4 -218 74 5 4 1353 356 106 30 0 chr6 100745727 100745793 -48771244 + (TTTTA)n Simple_repeat Simple_repeat 3 70 0 4 1353 245 278 0 0 chr6 100746566 100746620 -48770417 + Charlie24 DNA MER1_type 2387 2440 -10 4 1353 196 367 92 0 chr6 100747034 100747143 -48769894 - MIR3 SINE MIR -42 166 48 4 1353 1742 202 28 28 chr6 100747143 100747499 -48769538 + MTD LTR MaLR 1 356 -63 4 1353 1224 115 40 0 chr6 100747501 100747675 -48769362 + B2_Mm2 SINE B2 2 182 -13 4 1353 316 92 396 44 chr6 100747697 100747788 -48769249 + B2_Mm1t SINE B2 67 189 -4 4 1353 408 173 13 21 chr6 100747769 100747854 -48769183 + MTD LTR MaLR 293 417 -2 4 1353 220 200 0 0 chr6 100748547 100748613 -48768424 + (TTTG)n Simple_repeat Simple_repeat 1 66 0 4 1353 784 277 79 40 chr6 100748613 100748693 -48768344 - B4A SINE B4 0 292 214 4 1353 1147 195 5 15 chr6 100748693 100748896 -48768141 - B3 SINE B2 -15 201 1 4 1353 784 277 79 40 chr6 100748896 100749093 -48767944 - B4A SINE B4 -79 213 4 4 1353 815 280 21 0 chr6 100749358 100749547 -48767490 + Tigger7 DNA MER2_type 56 248 -2243 5 1353 334 276 13 26 chr6 100749562 100749640 -48767397 + Tigger7 DNA MER2_type 2409 2485 -6 5 1353 412 327 44 25 chr6 100749869 100750029 -48767008 + MER58B DNA MER1_type 147 309 -32 5 1353 668 264 88 61 chr6 100750140 100750420 -48766617 - B4 SINE B4 -16 276 9 5 1353 260 260 98 59 chr6 100751061 100751163 -48765874 + MIRb SINE MIR 53 158 -110 5 1353 590 206 210 59 chr6 100751165 100751351 -48765686 + B3 SINE B2 2 215 -1 5 1353 26 0 0 0 chr6 100751351 100751377 -48765660 + AT_rich Low_complexity Low_complexity 1 26 0 5 1353 688 262 42 18 chr6 100751404 100751571 -48765466 + B3A SINE B2 2 172 -26 5 1353 200 35 35 0 chr6 100751582 100751611 -48765426 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1353 974 113 21 0 chr6 100751996 100752137 -48764900 + B1_Mur4 SINE Alu 6 149 -1 5 1353 1155 36 0 21 chr6 100752142 100752282 -48764755 + B1_Mm SINE Alu 1 137 -10 5 1353 294 29 0 0 chr6 100752282 100752317 -48764720 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1353 277 281 16 0 chr6 100753374 100753438 -48763599 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 5 1353 216 0 0 0 chr6 100753455 100753479 -48763558 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1353 324 0 0 0 chr6 100753557 100753593 -48763444 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 5 1353 972 234 65 0 chr6 100753593 100753794 -48763243 + B3 SINE B2 2 215 -1 5 1353 265 333 57 0 chr6 100753956 100754061 -48762976 + PB1D7 SINE Alu 5 115 -5 5 1353 1191 61 0 20 chr6 100754206 100754357 -48762680 + B1_Mus1 SINE Alu 1 148 0 5 1353 678 130 0 0 chr6 100754384 100754492 -48762545 + (TC)n Simple_repeat Simple_repeat 1 108 0 5 1353 517 261 112 0 chr6 100755071 100755205 -48761832 + RSINE1 SINE B4 9 157 -8 5 1353 1120 194 0 19 chr6 100755237 100755452 -48761585 + B3 SINE B2 1 211 -5 5 1353 300 161 0 0 chr6 100756040 100756121 -48760916 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1353 637 277 17 11 chr6 100756122 100756301 -48760736 - B3A SINE B2 -18 180 1 5 1353 1163 63 0 7 chr6 100756527 100756663 -48760374 + B1_Mus1 SINE Alu 2 137 -11 5 1353 726 44 0 0 chr6 100756663 100756753 -48760284 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 5 1353 342 267 124 0 chr6 100758183 100758264 -48758773 + B1_Mus1 SINE Alu 1 94 -54 5 1353 832 157 412 22 chr6 100758264 100758547 -48758490 - ORR1C2 LTR MaLR 0 394 1 5 1353 1054 207 5 29 chr6 100759152 100759356 -48757681 + B3 SINE B2 1 199 -17 5 1353 1191 55 7 0 chr6 100759375 100759521 -48757516 + B1_Mus2 SINE Alu 1 147 0 5 1353 322 230 40 149 chr6 100759524 100759672 -48757365 + MT2B LTR ERVL 152 283 -318 5 1353 689 168 37 30 chr6 100759550 100759685 -48757352 + B1_Mur1 SINE Alu 14 149 0 5 1353 30 0 0 0 chr6 100760867 100760897 -48756140 + AT_rich Low_complexity Low_complexity 1 30 0 5 1353 1228 48 0 7 chr6 100761078 100761225 -48755812 + B1_Mus1 SINE Alu 1 146 -2 5 1353 546 16 0 0 chr6 100761355 100761418 -48755619 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1353 249 250 0 14 chr6 100761673 100761746 -48755291 + C-rich Low_complexity Low_complexity 2 73 0 5 1353 253 393 36 0 chr6 100761835 100761947 -48755090 + L2c LINE L2 3081 3196 -191 5 1353 318 306 78 43 chr6 100762014 100762130 -48754907 + B1_Mur2 SINE Alu 1 120 0 5 1353 240 143 0 0 chr6 100762130 100762172 -48754865 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 5 1353 37218 16 15 13 chr6 100762174 100766670 -48750367 + L1Md_A LINE L1 404 4926 -957 5 1353 232 183 46 77 chr6 100766670 100766735 -48750302 - RMER20A LTR ERVK -268 248 186 5 1353 37218 16 15 13 chr6 100766735 100767389 -48749648 + L1Md_A LINE L1 4927 5586 -297 5 1353 8717 28 0 0 chr6 100767389 100768385 -48748652 + L1Md_T LINE L1 5587 6582 0 5 1353 338 286 63 39 chr6 100768395 100768553 -48748484 + L1M5 LINE L1 3060 3212 -2934 5 1353 1227 103 32 0 chr6 100768582 100768767 -48748270 - B2_Mm1t SINE B2 -1 192 2 5 1353 431 95 0 13 chr6 100769253 100769328 -48747709 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 1353 1025 123 14 0 chr6 100770049 100770195 -48746842 - B1_Mur4 SINE Alu -1 149 2 5 1353 429 109 0 0 chr6 100770250 100770314 -48746723 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1353 3412 129 57 87 chr6 100770315 100770588 -48746449 - RMER6A LTR ERVK -7 749 469 5 1353 2933 137 71 90 chr6 100770588 100771165 -48745872 - RMER2 LTR ERV1 0 567 2 5 1353 3412 129 57 87 chr6 100771165 100771605 -48745432 - RMER6A LTR ERVK -288 468 57 5 1353 622 336 0 0 chr6 100771622 100771768 -48745269 - RSINE1 SINE B4 -17 148 3 5 1353 824 97 228 43 chr6 100771852 100772014 -48745023 + B2_Mm1t SINE B2 2 193 0 5 1353 759 201 164 26 chr6 100772191 100772380 -48744657 + B3 SINE B2 2 216 0 5 1353 1528 57 15 15 chr6 100772399 100772594 -48744443 + B2_Mm2 SINE B2 1 195 0 5 1353 366 354 113 11 chr6 100772781 100773064 -48743973 + LTR16C LTR ERVL 153 464 -25 5 1353 623 216 0 56 chr6 100773128 100773270 -48743767 - B1_Mur1 SINE Alu -13 136 3 5 1353 264 186 0 0 chr6 100773361 100773404 -48743633 + MER5A DNA MER1_type 4 46 -143 5 1353 802 185 7 27 chr6 100773927 100774077 -48742960 + B1_Mur1 SINE Alu 3 149 0 5 1353 216 127 31 31 chr6 100774077 100774100 -48742937 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 5 1353 1073 74 0 0 chr6 100774100 100774235 -48742802 + B1_Mus1 SINE Alu 2 136 -12 5 1353 216 127 31 31 chr6 100774235 100774276 -48742761 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 5 1353 334 316 39 78 chr6 100774325 100774531 -48742506 + B4A SINE B4 35 232 -60 5 1353 536 262 7 41 chr6 100774839 100774986 -48742051 + RSINE1 SINE B4 2 143 -22 5 1353 232 306 57 103 chr6 100774986 100775014 -48742023 + B3A SINE B2 1 167 -31 5 1353 408 40 0 0 chr6 100775015 100775065 -48741972 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1353 450 277 10 19 chr6 100775124 100775227 -48741810 + ID_B1 SINE B4 122 223 -1 5 1353 802 238 45 25 chr6 100775229 100775427 -48741610 + ID_B1 SINE B4 2 203 -21 5 1353 360 0 0 0 chr6 100775435 100775475 -48741562 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1353 311 342 81 19 chr6 100775556 100775717 -48741320 + MLT1C LTR MaLR 290 460 -7 5 1353 230 333 48 10 chr6 100776240 100776343 -48740694 - MIR SINE MIR -124 138 32 5 1353 314 263 200 10 chr6 100776489 100776589 -48740448 - B4 SINE B4 -63 229 111 5 1353 555 308 76 33 chr6 100776684 100776990 -48740047 - MLT2B4 LTR ERVL -59 497 33 5 1353 21 0 0 0 chr6 100777731 100777752 -48739285 + AT_rich Low_complexity Low_complexity 1 21 0 5 1353 315 0 0 0 chr6 100777790 100777825 -48739212 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 1353 1245 34 0 0 chr6 100777825 100777971 -48739066 - B1_Mm SINE Alu -1 146 1 5 1353 207 0 0 0 chr6 100777996 100778019 -48739018 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1353 766 154 22 7 chr6 100778019 100778156 -48738881 - B1_Mus1 SINE Alu -9 139 1 5 1353 676 212 13 27 chr6 100778241 100778391 -48738646 - B1F2 SINE Alu -1 148 1 5 1353 385 256 106 16 chr6 100778670 100778793 -48738244 - B3A SINE B2 -4 194 61 5 1353 195 42 0 0 chr6 100778822 100778846 -48738191 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1353 1151 58 0 0 chr6 100778869 100779008 -48738029 - B1_Mus2 SINE Alu -8 139 1 5 1353 416 227 111 21 chr6 100779012 100779156 -48737881 - L1M2 LINE L1 -818 5325 5169 5 1353 455 248 50 149 chr6 100779477 100779866 -48737171 + ORR1E LTR MaLR 3 366 -13 5 1353 504 211 1 101 chr6 100779986 100780130 -48736907 + B1_Mur1 SINE Alu 6 136 -13 5 1353 2860 116 45 92 chr6 100780650 100781202 -48735835 + RLTR24 LTR ERV1 1 526 -3 5 1353 505 228 63 0 chr6 100781538 100781665 -48735372 + B1F SINE Alu 2 136 -13 5 1353 297 323 21 0 chr6 100781682 100781775 -48735262 + GA-rich Low_complexity Low_complexity 4 98 0 5 1353 218 275 88 0 chr6 100781776 100781789 -48735248 + ID SINE ID 7 88 -131 5 1353 258 250 19 2 chr6 100781789 100781851 -48735186 + ID4 SINE ID 20 81 -71 5 1353 943 57 31 119 chr6 100782458 100782618 -48734419 - B1_Mus1 SINE Alu -1 147 2 5 1353 302 67 0 22 chr6 100782760 100782806 -48734231 + (TTTTC)n Simple_repeat Simple_repeat 2 46 0 5 1353 222 37 0 0 chr6 100783069 100783096 -48733941 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1353 457 291 88 0 chr6 100783107 100783255 -48733782 + ID_B1 SINE B4 2 162 -62 5 1353 189 0 0 0 chr6 100783286 100783307 -48733730 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1353 203 250 0 0 chr6 100783376 100783428 -48733609 - MIR SINE MIR -55 153 102 5 1353 245 228 21 42 chr6 100783768 100783864 -48733173 + G-rich Low_complexity Low_complexity 3 96 0 5 1353 23 68 0 0 chr6 100783919 100783963 -48733074 + GC_rich Low_complexity Low_complexity 1 44 0 5 1353 21 0 0 0 chr6 100784477 100784498 -48732539 + AT_rich Low_complexity Low_complexity 1 21 0 5 1353 533 200 18 9 chr6 100784500 100784611 -48732426 - PB1D9 SINE Alu -8 112 1 5 1353 342 319 71 0 chr6 100784914 100785027 -48732010 + RSINE1 SINE B4 2 122 -43 5 1353 189 0 0 0 chr6 100785256 100785277 -48731760 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1353 414 198 113 0 chr6 100785865 100785971 -48731066 - B1F SINE Alu -31 118 1 5 1353 762 112 24 8 chr6 100786111 100786237 -48730800 + B1_Mur4 SINE Alu 22 149 -1 5 1353 278 295 13 0 chr6 100786255 100786333 -48730704 - PB1D10 SINE Alu -36 81 3 6 1353 931 65 0 0 chr6 100786481 100786605 -48730432 + B1_Mus2 SINE Alu 17 140 -7 6 1353 475 263 29 43 chr6 100786680 100786819 -48730218 + B1_Mur2 SINE Alu 2 138 -11 6 1353 796 224 62 0 chr6 100786848 100787027 -48730010 + B3 SINE B2 6 195 -21 6 1353 761 119 8 0 chr6 100787258 100787376 -48729661 + B1_Mur4 SINE Alu 19 137 -13 6 1353 740 158 23 0 chr6 100787961 100788094 -48728943 - B1_Mur4 SINE Alu 0 150 15 6 1353 342 292 139 0 chr6 100788086 100788223 -48728814 - B3 SINE B2 -13 203 48 6 1353 217 246 15 15 chr6 100788579 100788645 -48728392 + GA-rich Low_complexity Low_complexity 1 66 0 6 1353 602 26 13 0 chr6 100788808 100788884 -48728153 + (TTCTC)n Simple_repeat Simple_repeat 4 80 0 6 1353 1276 112 160 15 chr6 100788917 100789180 -48727857 - RMER15 LTR ERVL 0 575 275 6 1353 397 224 17 39 chr6 100789181 100789362 -48727675 + CT-rich Low_complexity Low_complexity 4 180 0 6 1353 990 151 114 42 chr6 100789362 100789625 -48727412 - RMER15 LTR ERVL -293 282 1 6 1353 225 218 73 0 chr6 100789768 100789823 -48727214 - B1F SINE Alu -35 114 56 6 1353 1197 41 0 20 chr6 100790053 100790203 -48726834 - B1_Mus2 SINE Alu 0 147 1 6 1353 388 226 24 12 chr6 100790218 100790303 -48726734 - RSINE1 SINE B4 -35 130 45 6 1353 556 266 14 35 chr6 100791418 100791562 -48725475 - ID_B1 SINE B4 0 224 84 6 1353 689 188 103 41 chr6 100791819 100792013 -48725024 + B3 SINE B2 5 210 -6 6 1353 625 165 15 66 chr6 100792061 100792197 -48724840 - B1_Mur3 SINE Alu 0 149 21 6 1353 1343 77 22 0 chr6 100792639 100792820 -48724217 - B2_Mm1t SINE B2 -7 186 2 6 1353 277 280 75 60 chr6 100792917 100793050 -48723987 - PB1D10 SINE Alu -14 135 1 6 1353 245 267 40 0 chr6 100793896 100793971 -48723066 - RSINE1 SINE B4 -3 162 85 6 1353 990 83 15 8 chr6 100794120 100794254 -48722783 + B1_Mus1 SINE Alu 5 139 -9 6 169 333 228 0 0 chr6 100794313 100794392 -48722645 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 6 1354 1010 23 8 0 chr6 100794409 100794538 -48722499 - B1_Mm SINE Alu 0 147 18 6 1354 509 150 19 48 chr6 100794590 100794695 -48722342 - ORR1B2 LTR MaLR 0 367 266 6 1354 368 250 135 0 chr6 100795318 100795414 -48721623 + B1F SINE Alu 4 112 -37 6 1354 909 76 76 0 chr6 100795821 100795965 -48721072 + B2_Mm2 SINE B2 39 193 -2 6 1354 268 345 0 0 chr6 100795965 100796049 -48720988 - L2 LINE L2 -1387 2032 1949 6 1354 243 0 0 0 chr6 100796485 100796512 -48720525 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1354 878 70 68 23 chr6 100796512 100796644 -48720393 - B1_Mm SINE Alu -9 138 1 6 1354 707 161 80 7 chr6 100796878 100797016 -48720021 + B1_Mur4 SINE Alu 2 149 -1 6 1354 757 246 5 47 chr6 100797112 100797304 -48719733 - B3 SINE B2 -1 215 32 6 1354 985 185 95 28 chr6 100797351 100797562 -48719475 - URR1B DNA MER1_type 0 225 1 6 1354 513 292 36 0 chr6 100797875 100798012 -48719025 - RSINE1 SINE B4 -21 144 3 6 1354 1118 80 0 0 chr6 100798572 100798710 -48718327 - B1_Mus2 SINE Alu -9 138 1 6 1354 310 179 60 0 chr6 100798811 100798878 -48718159 - MTE2a LTR MaLR 0 379 309 6 1354 387 245 71 26 chr6 100799666 100799779 -48717258 - ID_B1 SINE B4 -53 171 54 6 1354 256 340 28 37 chr6 100799849 100799956 -48717081 - Charlie1a DNA MER1_type -1239 216 111 6 1354 313 273 10 39 chr6 100800273 100800376 -48716661 - RMER15 LTR ERVL -14 561 462 6 1354 1181 192 61 90 chr6 100800407 100800484 -48716553 - ORR1C1 LTR MaLR -15 363 288 6 1354 1282 168 18 5 chr6 100800484 100800706 -48716331 - URR1B DNA MER1_type 0 225 1 6 1354 1181 192 61 90 chr6 100800706 100800971 -48716066 - ORR1C1 LTR MaLR -91 287 31 6 1354 366 296 52 120 chr6 100800975 100801030 -48716007 - RMER15 LTR ERVL -125 450 397 6 1354 1173 28 14 14 chr6 100801030 100801177 -48715860 + B1_Mus2 SINE Alu 1 147 0 6 1354 366 296 52 120 chr6 100801177 100801313 -48715724 - RMER15 LTR ERVL -179 396 272 6 1354 866 249 29 10 chr6 100801338 100801545 -48715492 + B3 SINE B2 4 214 -2 6 1354 235 217 34 218 chr6 100801584 100801731 -48715306 - RMER15 LTR ERVL -455 120 1 6 1354 525 313 75 39 chr6 100801780 100802059 -48714978 - B4A SINE B4 0 292 4 6 1354 627 241 14 14 chr6 100802195 100802342 -48714695 - B1F2 SINE Alu -1 148 2 6 1354 335 224 70 20 chr6 100803311 100803411 -48713626 - PB1D9 SINE Alu -15 105 1 6 1354 22 0 0 0 chr6 100803870 100803892 -48713145 + AT_rich Low_complexity Low_complexity 1 22 0 6 1354 1043 52 90 0 chr6 100803913 100804047 -48712990 + B1_Mus1 SINE Alu 2 147 -1 6 1354 427 287 116 17 chr6 100804502 100804683 -48712354 - B4A SINE B4 -89 203 5 6 1354 238 245 51 136 chr6 100804887 100804953 -48712084 + PB1D10 SINE Alu 9 71 -46 6 1354 1246 91 42 26 chr6 100804953 100805145 -48711892 + B2_Mm2 SINE B2 1 195 0 6 1354 238 245 51 136 chr6 100805145 100805196 -48711841 + PB1D10 SINE Alu 72 116 -1 6 1354 22 0 0 0 chr6 100805234 100805256 -48711781 + AT_rich Low_complexity Low_complexity 1 22 0 6 1354 986 63 49 7 chr6 100805256 100805399 -48711638 + B2_Mm2 SINE B2 2 150 -45 6 1354 273 349 118 8 chr6 100805419 100805480 -48711557 + B3A SINE B2 43 102 -96 6 1354 331 202 154 26 chr6 100805480 100805597 -48711440 + B1_Mur4 SINE Alu 1 132 -18 6 1354 273 349 118 8 chr6 100805597 100805662 -48711375 + B3A SINE B2 103 182 -16 6 1354 244 238 16 16 chr6 100805914 100805978 -48711059 - ID4 SINE ID -18 65 2 6 1354 742 53 266 0 chr6 100806112 100806225 -48710812 - B1_Mm SINE Alu 0 147 5 6 1354 739 181 165 0 chr6 100806295 100806477 -48710560 - B3 SINE B2 -2 214 3 6 1354 4253 205 107 35 chr6 100806681 100807725 -48709312 - Lx7 LINE L1 -16 7680 6561 6 1354 1193 42 7 0 chr6 100808342 100808485 -48708552 - B1_Mus1 SINE Alu 0 148 5 6 1354 360 0 0 0 chr6 100808729 100808769 -48708268 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1354 282 191 0 0 chr6 100808814 100808861 -48708176 - B3A SINE B2 -137 61 15 6 1354 733 266 94 16 chr6 100808902 100809158 -48707879 - Lx9 LINE L1 -355 7289 7014 6 1354 818 196 33 30 chr6 100809164 100809382 -48707655 - L1_Rod LINE L1 -937 4943 4720 6 1354 507 219 57 0 chr6 100809654 100809777 -48707260 + B1_Mm SINE Alu 5 134 -13 6 1354 265 297 42 67 chr6 100809808 100809927 -48707110 + PB1D10 SINE Alu 2 117 0 6 1354 312 82 455 20 chr6 100810003 100810102 -48706935 - B2_Mm2 SINE B2 -7 188 47 6 1354 1017 108 127 0 chr6 100810170 100810328 -48706709 - B2_Mm1t SINE B2 -14 179 2 6 1354 184 350 17 0 chr6 100810331 100810391 -48706646 + MIRc SINE MIR 27 87 -181 6 1354 775 241 85 5 chr6 100810597 100810785 -48706252 - B3 SINE B2 -6 210 8 6 1354 351 224 66 0 chr6 100812396 100812472 -48704565 + B1_Mur1 SINE Alu 37 117 -32 6 1354 1057 37 80 14 chr6 100812568 100812706 -48704331 + B1_Mus2 SINE Alu 1 147 0 6 1354 180 0 0 0 chr6 100812806 100812826 -48704211 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1354 1170 69 0 0 chr6 100812826 100812971 -48704066 - B1_Mm SINE Alu -2 145 1 6 1354 1129 83 64 23 chr6 100813161 100813183 -48703854 - B2_Mm1a SINE B2 -13 180 160 6 1354 654 65 0 0 chr6 100813183 100813275 -48703762 + (TTTA)n Simple_repeat Simple_repeat 2 93 0 6 1354 1129 83 64 23 chr6 100813275 100813425 -48703612 - B2_Mm1a SINE B2 -34 159 1 6 1354 785 219 42 42 chr6 100814222 100814437 -48702600 - B3 SINE B2 0 216 2 6 1354 704 204 14 14 chr6 100814502 100814646 -48702391 - B1_Mur1 SINE Alu -1 148 5 6 1354 27 29 0 0 chr6 100814995 100815029 -48702008 + AT_rich Low_complexity Low_complexity 1 34 0 6 1354 312 91 0 0 chr6 100816031 100816075 -48700962 + (GGA)n Simple_repeat Simple_repeat 2 45 0 6 1354 21 57 0 0 chr6 100816835 100816870 -48700167 + AT_rich Low_complexity Low_complexity 1 35 0 6 1354 228 229 57 0 chr6 100820455 100820577 -48696460 + B3 SINE B2 53 205 -11 6 1354 977 40 96 0 chr6 100821371 100821496 -48695541 + B1_Mus1 SINE Alu 1 137 -11 6 1354 212 0 36 0 chr6 100821496 100821524 -48695513 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1354 912 241 164 27 chr6 100821709 100822038 -48694999 - MTD LTR MaLR -45 374 1 6 1354 268 345 9 9 chr6 100822147 100822258 -48694779 - Kanga1 DNA Tc2 -1277 468 358 6 1354 207 0 0 0 chr6 100822718 100822741 -48694296 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1354 2401 204 3 67 chr6 100822910 100823478 -48693559 - RMER5 LTR ERV1 -2 532 1 6 1354 1071 146 51 55 chr6 100823734 100823951 -48693086 - B3 SINE B2 0 216 1 6 1354 974 144 65 22 chr6 100823960 100824145 -48692892 - B2_Mm2 SINE B2 -2 193 1 6 1354 477 270 19 75 chr6 100824177 100824337 -48692700 - RSINE1 SINE B4 0 165 15 6 1354 729 84 9 0 chr6 100824532 100824639 -48692398 - B1_Mm SINE Alu -21 126 19 6 1354 282 214 28 28 chr6 100824622 100824694 -48692343 + PB1D10 SINE Alu 45 116 -1 6 1354 247 310 30 0 chr6 100824850 100824950 -48692087 - MIR SINE MIR -81 181 79 6 1354 478 207 6 6 chr6 100825208 100825373 -48691664 + CT-rich Low_complexity Low_complexity 2 166 0 6 1354 270 0 0 0 chr6 100825374 100825404 -48691633 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1354 459 246 84 88 chr6 100825415 100825700 -48691337 - B4A SINE B4 -6 286 3 6 1354 612 91 0 0 chr6 100826137 100826225 -48690812 + (GGAA)n Simple_repeat Simple_repeat 4 91 0 6 1354 460 301 31 31 chr6 100826923 100827084 -48689953 + RSINE1 SINE B4 3 163 -2 6 1354 228 35 0 0 chr6 100827114 100827143 -48689894 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 6 1354 375 292 52 7 chr6 100827274 100827429 -48689608 + Lx8 LINE L1 6419 6580 -893 6 1354 1513 148 136 18 chr6 100827469 100827800 -48689237 + ORR1B1 LTR MaLR 25 394 0 7 1354 1788 300 77 19 chr6 100827802 100828520 -48688517 + Lx8 LINE L1 6592 7350 -123 6 1354 261 0 0 0 chr6 100828522 100828551 -48688486 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1354 575 185 165 110 chr6 100828652 100828834 -48688203 + B3 SINE B2 7 216 0 7 1354 405 169 101 0 chr6 100829480 100829569 -48687468 + B1F SINE Alu 34 131 -18 7 1354 441 50 0 0 chr6 100830035 100830095 -48686942 - B1_Mus2 SINE Alu -2 145 86 7 1354 28 29 0 0 chr6 100830148 100830183 -48686854 + AT_rich Low_complexity Low_complexity 1 35 0 7 1354 307 204 198 31 chr6 100830213 100830295 -48686742 + PB1D9 SINE Alu 9 108 -12 7 1354 180 0 0 0 chr6 100830295 100830315 -48686722 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 7 1354 307 204 198 31 chr6 100830315 100830328 -48686709 + PB1D9 SINE Alu 109 120 0 7 1354 670 202 116 44 chr6 100830336 100830351 -48686686 - B3 SINE B2 -22 194 181 7 1354 304 41 61 0 chr6 100830351 100830400 -48686637 + (TATG)n Simple_repeat Simple_repeat 2 53 0 7 1354 670 202 116 44 chr6 100830400 100830565 -48686472 - B3 SINE B2 -36 180 1 7 1354 582 232 0 0 chr6 100830627 100830739 -48686298 - PB1D7 SINE Alu -8 112 1 7 1354 363 238 0 12 chr6 100831417 100831498 -48685539 - ID4 SINE ID -3 80 1 7 1354 1253 28 7 0 chr6 100833180 100833324 -48683713 - B1_Mus2 SINE Alu 0 147 3 7 1354 469 255 97 111 chr6 100833330 100833546 -48683491 - B3 SINE B2 -2 214 2 7 1354 255 247 149 23 chr6 100833707 100833794 -48683243 - L2a LINE L2 -65 3361 3264 7 1354 188 79 0 50 chr6 100833794 100833834 -48683203 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 7 1354 614 274 167 75 chr6 100833854 100833911 -48683126 - MTEa LTR MaLR 0 379 335 7 1354 508 271 0 91 chr6 100833911 100834065 -48682972 + B1_Mur2 SINE Alu 2 141 -8 7 1354 224 59 29 0 chr6 100834066 100834100 -48682937 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 7 1354 614 274 167 75 chr6 100834100 100834387 -48682650 - MTEa LTR MaLR -45 334 1 7 1354 183 219 0 0 chr6 100834588 100834629 -48682408 - L2a LINE L2 -314 3073 3033 7 1354 462 18 0 0 chr6 100834663 100834718 -48682319 + (CCAA)n Simple_repeat Simple_repeat 2 56 0 7 1354 228 67 0 0 chr6 100834892 100834922 -48682115 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1354 920 250 90 15 chr6 100835600 100835868 -48681169 + B4A SINE B4 1 288 -4 7 1354 615 166 32 6 chr6 100836015 100836173 -48680864 + (TA)n Simple_repeat Simple_repeat 2 163 0 7 1354 325 250 71 36 chr6 100836252 100836364 -48680673 - MIR SINE MIR -110 152 37 7 1354 239 299 69 0 chr6 100836373 100836460 -48680577 + MER103 DNA DNA 27 119 -47 7 1354 524 282 55 6 chr6 100837327 100837509 -48679528 - L1MB5 LINE L1 -191 5983 5793 7 1354 1103 249 167 16 chr6 100837528 100837899 -48679138 + Lx8 LINE L1 6790 7216 -257 7 1354 2162 90 31 19 chr6 100837941 100838259 -48678778 + IAPLTR2b LTR ERVK 1 322 -5 7 1354 414 0 0 0 chr6 100838461 100838507 -48678530 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1354 515 283 15 91 chr6 100838566 100838764 -48678273 + B3A SINE B2 1 183 -15 7 1354 279 345 99 39 chr6 100839145 100839326 -48677711 - LTR16C LTR ERVL -1 488 297 7 1354 261 322 0 75 chr6 100840238 100840332 -48676705 + MLT1J LTR MaLR 242 328 -184 7 1354 317 222 0 16 chr6 100840498 100840562 -48676475 + Tigger13a DNA MER2_type 518 580 -191 7 1354 321 268 39 31 chr6 100840867 100840994 -48676043 + L1MC3 LINE L1 7363 7490 -295 7 1354 314 255 137 0 chr6 100841096 100841198 -48675839 + PB1D10 SINE Alu 1 116 -1 7 1354 1869 295 33 7 chr6 100841455 100842031 -48675006 + Lx8 LINE L1 6881 7471 -2 7 1354 347 314 115 35 chr6 100842615 100842902 -48674135 + MLT1K LTR MaLR 263 572 -23 7 1354 281 250 52 104 chr6 100843031 100843165 -48673872 + MIRb SINE MIR 55 181 -87 7 1354 352 280 0 0 chr6 100843169 100843244 -48673793 + ID4_ SINE ID 2 76 -7 7 1354 313 266 181 80 chr6 100843655 100843892 -48673145 - RMER15 LTR ERVL -15 560 300 7 1354 420 20 0 0 chr6 100843899 100843948 -48673089 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1354 571 238 0 71 chr6 100843950 100844090 -48672947 - B3A SINE B2 -55 143 14 7 1354 249 93 23 0 chr6 100844367 100844410 -48672627 + B2_Mm1t SINE B2 138 181 -12 7 1354 1146 100 71 0 chr6 100844421 100844591 -48672446 + B2_Mm1t SINE B2 5 186 -7 7 1354 231 36 0 0 chr6 100844982 100845010 -48672027 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1354 1269 102 75 0 chr6 100845616 100845802 -48671235 - L1_Mus1 LINE L1 -6 6561 6362 7 1354 215 320 26 13 chr6 100846292 100846368 -48670669 + RSINE1 SINE B4 1 77 -88 7 1354 414 98 12 24 chr6 100846368 100846452 -48670585 + (TG)n Simple_repeat Simple_repeat 1 83 0 7 1354 324 253 40 13 chr6 100846463 100846539 -48670498 - RSINE1 SINE B4 -24 141 64 7 1354 483 291 165 0 chr6 100846885 100846993 -48670044 - RMER15 LTR ERVL -15 560 452 7 1354 351 0 0 0 chr6 100846993 100847032 -48670005 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1354 483 291 165 0 chr6 100847032 100847105 -48669932 - RMER15 LTR ERVL -124 451 351 7 1354 3025 59 59 0 chr6 100847519 100847907 -48669130 + RLTR10A LTR ERVK 1 411 0 7 1354 1407 106 9 14 chr6 100848415 100848626 -48668411 - Lx4A LINE L1 -327 6731 6522 7 1354 2096 127 3 12 chr6 100848626 100848954 -48668083 + Lx4A LINE L1 6734 7058 0 7 1354 34 0 0 0 chr6 100848954 100848988 -48668049 + AT_rich Low_complexity Low_complexity 1 34 0 7 1354 21 0 0 0 chr6 100849979 100850000 -48667037 + AT_rich Low_complexity Low_complexity 1 21 0 7 1354 369 276 23 0 chr6 100850031 100850113 -48666924 + B4 SINE B4 13 96 -196 7 1354 1193 110 10 40 chr6 100850113 100850199 -48666838 + B2_Mm1t SINE B2 1 87 -106 7 1354 2960 52 0 0 chr6 100850199 100850545 -48666492 - ORR1A0 LTR MaLR 0 346 1 7 1354 1193 110 10 40 chr6 100850545 100850657 -48666380 + B2_Mm1t SINE B2 88 193 0 7 1354 972 112 7 7 chr6 100850658 100850802 -48666235 - B2_Mm1t SINE B2 -39 154 11 7 1354 241 318 11 34 chr6 100850727 100850815 -48666222 - RSINE1 SINE B4 -79 86 1 7 1354 311 317 30 0 chr6 100851114 100851215 -48665822 + MLT1K LTR MaLR 173 276 -319 7 1354 1182 108 24 0 chr6 100851798 100851965 -48665072 + B2_Mm2 SINE B2 11 181 -14 7 1354 366 149 13 0 chr6 100852015 100852086 -48664951 + B2_Mm2 SINE B2 47 121 -95 7 1354 309 51 0 0 chr6 100852096 100852135 -48664902 + (TAA)n Simple_repeat Simple_repeat 2 40 0 7 1354 526 262 33 0 chr6 100852393 100852515 -48664522 - RSINE1 SINE B4 -24 141 16 7 1354 234 0 0 0 chr6 100852745 100852771 -48664266 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 7 1354 291 54 0 0 chr6 100852772 100852809 -48664228 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 7 1354 1204 83 0 0 chr6 100852809 100852965 -48664072 - B2_Mm2 SINE B2 -38 157 2 7 1354 553 249 70 75 chr6 100853006 100853193 -48663844 + B3A SINE B2 13 198 0 7 1354 253 226 155 3 chr6 100853213 100853305 -48663732 + B1F SINE Alu 39 147 -2 7 1354 625 222 30 0 chr6 100853357 100853492 -48663545 + RSINE1 SINE B4 4 142 -23 7 1354 310 222 186 29 chr6 100853511 100853613 -48663424 + L1MB7 LINE L1 5278 5395 -751 7 1354 287 301 221 20 chr6 100853685 100853983 -48663054 + L1MB7 LINE L1 5510 5867 -307 7 1354 263 220 36 5 chr6 100854132 100854228 -48662809 + L1MB7 LINE L1 5914 6015 -163 7 1354 367 330 9 0 chr6 100855011 100855126 -48661911 - MIR SINE MIR -106 156 41 7 1354 642 202 51 58 chr6 100855221 100855358 -48661679 + B3 SINE B2 1 136 -80 7 1354 279 0 0 0 chr6 100855362 100855393 -48661644 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1354 453 36 0 0 chr6 100855393 100855447 -48661590 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1354 587 173 45 0 chr6 100855461 100855571 -48661466 - PB1D9 SINE Alu -1 119 5 7 1354 644 303 107 44 chr6 100855711 100856137 -48660900 - L1MD LINE L1 -1011 5135 4678 7 1354 995 219 23 19 chr6 100856137 100856351 -48660686 - B3 SINE B2 0 216 2 7 1354 644 303 107 44 chr6 100856351 100856539 -48660498 - L1MD LINE L1 -1469 4677 4483 7 1354 713 285 6 0 chr6 100856558 100856737 -48660300 - B3A SINE B2 -18 180 1 7 1354 292 286 14 36 chr6 100856737 100856875 -48660162 - L1MC LINE L1 -1643 4503 4369 7 1354 1224 48 0 7 chr6 100856957 100857105 -48659932 - B1_Mm SINE Alu 0 147 1 7 1354 272 304 74 120 chr6 100857156 100857302 -48659735 - B3 SINE B2 0 216 10 7 1354 318 257 14 14 chr6 100857302 100857373 -48659664 - B4 SINE B4 -212 80 10 7 1354 427 223 77 28 chr6 100858046 100858189 -48658848 - L1MC LINE L1 -2131 4015 3866 7 1354 207 0 0 0 chr6 100858235 100858258 -48658779 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1354 240 324 107 29 chr6 100858369 100858509 -48658528 - MLT1A1 LTR MaLR -257 151 1 7 1354 328 217 54 77 chr6 100858530 100858660 -48658377 - L1M5 LINE L1 -2829 3317 3191 7 1354 284 320 13 0 chr6 100858673 100858748 -48658289 - ID4_ SINE ID -6 77 2 7 1354 337 302 36 30 chr6 100858754 100858891 -48658146 - B1F SINE Alu -2 147 10 7 1354 845 236 137 4 chr6 100859600 100859855 -48657182 + B4A SINE B4 2 290 -2 7 1354 273 57 0 0 chr6 100859877 100859912 -48657125 + (CG)n Simple_repeat Simple_repeat 1 35 0 7 1354 345 233 0 15 chr6 100859985 100860068 -48656969 - ID4 SINE ID -51 101 20 7 1354 543 16 0 0 chr6 100860412 100860476 -48656561 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 1354 584 270 7 0 chr6 100860478 100860615 -48656422 - RSINE1 SINE B4 -22 143 6 7 1354 1016 225 283 37 chr6 100862132 100862429 -48654608 - ORR1D2 LTR MaLR 0 370 1 7 1354 555 96 0 0 chr6 100862843 100862926 -48654111 + (TA)n Simple_repeat Simple_repeat 2 84 0 7 1354 287 287 11 0 chr6 100862964 100863051 -48653986 - Lx9 LINE L1 -208 7436 7349 7 1354 292 307 211 0 chr6 100863472 100863586 -48653451 - B1_Mur1 SINE Alu 0 149 12 7 1354 1304 190 71 84 chr6 100863590 100863900 -48653137 - MT2A LTR ERVL -226 307 2 7 1354 743 169 6 17 chr6 100864226 100864302 -48652735 + polypyrimidine Low_complexity Low_complexity 98 174 0 7 1354 2383 92 12 12 chr6 100864302 100864631 -48652406 - ORR1A4 LTR MaLR 0 329 1 7 1354 743 169 6 17 chr6 100864631 100864729 -48652308 + polypyrimidine Low_complexity Low_complexity 2 97 0 8 1354 254 258 10 31 chr6 100864733 100864829 -48652208 + CT-rich Low_complexity Low_complexity 4 97 0 8 1354 779 135 0 8 chr6 100864831 100864965 -48652072 + (TCCC)n Simple_repeat Simple_repeat 2 134 0 8 1354 378 299 62 138 chr6 100865060 100865300 -48651737 + B4 SINE B4 2 223 -69 8 1354 438 226 0 61 chr6 100865208 100865307 -48651730 + B1_Mur2 SINE Alu 57 149 0 8 1354 275 245 10 21 chr6 100865372 100865440 -48651597 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 8 1354 5330 47 0 6 chr6 100865440 100866086 -48650951 + L1Md_F2 LINE L1 5938 6579 -3 8 1354 275 245 10 21 chr6 100866086 100866113 -48650924 + (TATATG)n Simple_repeat Simple_repeat 6 32 0 8 1354 502 309 71 92 chr6 100867144 100867482 -48649555 + MLT1A LTR MaLR 24 354 -20 8 1354 227 263 63 102 chr6 100867467 100867594 -48649443 - MER5A1 DNA MER1_type -40 126 5 8 1354 387 212 157 29 chr6 100868186 100868288 -48648749 - B3 SINE B2 -100 116 2 8 1354 1642 283 78 52 chr6 100868360 100868412 -48648625 - Lx8 LINE L1 0 7473 7420 8 1354 617 38 12 0 chr6 100868412 100868492 -48648545 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 1354 1642 283 78 52 chr6 100868492 100869185 -48647852 - Lx8 LINE L1 -54 7419 6709 8 1354 1649 32 0 0 chr6 100869267 100869454 -48647583 - B2_Mm1a SINE B2 -3 190 4 8 1354 22 0 0 0 chr6 100869454 100869476 -48647561 + AT_rich Low_complexity Low_complexity 1 22 0 8 1354 530 288 72 0 chr6 100869476 100869615 -48647422 - B1_Mur2 SINE Alu 0 149 1 8 1354 703 278 125 61 chr6 100870211 100870990 -48646047 - L1MA6 LINE L1 -31 6269 5484 8 1354 328 286 9 84 chr6 100871005 100871112 -48645925 - RSINE1 SINE B4 -56 109 11 8 1354 302 267 0 75 chr6 100871159 100871252 -48645785 - PB1D9 SINE Alu -1 119 34 8 1354 398 293 105 0 chr6 100871488 100871621 -48645416 - B4A SINE B4 -68 224 78 8 1354 300 243 13 89 chr6 100871593 100871665 -48645372 - BC1_Mm scRNA scRNA -6 146 1 8 1354 401 267 0 0 chr6 100871665 100871751 -48645286 - B4A SINE B4 -206 86 1 8 1354 640 228 77 18 chr6 100872366 100872536 -48644501 + B3A SINE B2 3 182 -16 8 1354 421 301 0 17 chr6 100872602 100872717 -48644320 + PB1D10 SINE Alu 1 113 -4 8 1354 252 0 0 0 chr6 100872827 100872855 -48644182 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 8 1354 631 278 11 22 chr6 100872855 100873039 -48643998 - B3A SINE B2 -16 182 1 8 1354 600 244 68 27 chr6 100874002 100874221 -48642816 + L1ME2z LINE L1 6198 6425 -19 8 1354 808 281 62 11 chr6 100874385 100874659 -48642378 + B4A SINE B4 1 288 -4 8 1354 552 252 159 13 chr6 100874763 100874920 -48642117 + B3A SINE B2 1 180 -18 8 1354 281 314 99 14 chr6 100875347 100875489 -48641548 - MLT1B LTR MaLR 0 390 237 8 1354 480 248 94 0 chr6 100875637 100875754 -48641283 + RSINE1 SINE B4 20 147 -18 8 1354 30 27 0 0 chr6 100876023 100876060 -48640977 + AT_rich Low_complexity Low_complexity 1 37 0 8 1354 710 133 0 48 chr6 100876070 100876196 -48640841 + PB1D9 SINE Alu 1 120 0 8 1354 256 319 28 0 chr6 100876357 100876429 -48640608 + ID4_ SINE ID 4 77 -6 8 1354 1153 287 66 76 chr6 100877376 100877483 -48639554 - MTEb LTR MaLR -2 377 281 8 1354 780 293 9 9 chr6 100877483 100877700 -48639337 - ID_B1 SINE B4 -4 220 4 8 1354 1153 287 66 76 chr6 100877700 100877973 -48639064 - MTEb LTR MaLR -99 280 1 8 1354 1140 124 0 0 chr6 100878205 100878383 -48638654 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 8 1354 441 77 25 25 chr6 100878387 100878467 -48638570 + (TTTC)n Simple_repeat Simple_repeat 4 83 0 8 1354 270 95 0 0 chr6 100878562 100878604 -48638433 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1354 394 119 0 0 chr6 100878714 100878773 -48638264 + B3A SINE B2 2 60 -138 8 1354 231 254 63 0 chr6 100880073 100880136 -48636901 - ID4_ SINE ID -2 81 15 8 1354 180 200 0 0 chr6 100880377 100880417 -48636620 + CT-rich Low_complexity Low_complexity 2 41 0 8 1354 665 262 54 0 chr6 100880460 100880628 -48636409 - B3A SINE B2 -18 180 4 8 1354 522 259 52 8 chr6 100881535 100881758 -48635279 - B4 SINE B4 -17 275 9 8 1354 5838 48 1 0 chr6 100881758 100882462 -48634575 + L1Md_F2 LINE L1 5878 6582 0 8 1354 245 340 177 8 chr6 100882544 100882713 -48634324 + MER20B DNA MER1_type 382 590 -193 8 1354 351 0 0 0 chr6 100882713 100882752 -48634285 + (TA)n Simple_repeat Simple_repeat 2 40 0 8 1354 245 340 177 8 chr6 100882752 100882819 -48634218 + MER20B DNA MER1_type 591 657 -126 8 1354 249 319 0 21 chr6 100883511 100883604 -48633433 - LTR82B Low_complexity ERVL -216 614 524 8 1354 616 314 70 19 chr6 100883769 100883983 -48633054 - LTR82A LTR ERVL -537 335 111 8 1354 197 135 0 19 chr6 100883983 100884036 -48633001 + (TCTCTG)n Simple_repeat Simple_repeat 2 53 0 8 1354 493 146 24 29 chr6 100884049 100884219 -48632818 + (TCTG)n Simple_repeat Simple_repeat 2 170 0 8 1354 1139 237 46 23 chr6 100884255 100884518 -48632519 - B4 SINE B4 -19 273 5 8 1354 1049 225 10 0 chr6 100884851 100885060 -48631977 + B3 SINE B2 1 211 -5 8 1354 1407 298 83 48 chr6 100885116 100885704 -48631333 - MER82 DNA MER2_type -33 620 12 8 1354 436 211 5 49 chr6 100885740 100885851 -48631186 + CT-rich Low_complexity Low_complexity 71 178 0 8 1354 865 178 14 0 chr6 100885851 100885997 -48631040 - B1_Mur1 SINE Alu 0 149 2 8 1354 436 211 5 49 chr6 100885997 100886069 -48630968 + polypyrimidine Low_complexity Low_complexity 3 70 0 8 1354 1107 134 23 6 chr6 100886083 100886256 -48630781 - B2_Mm2 SINE B2 -19 176 1 8 1354 402 195 39 13 chr6 100886331 100886409 -48630628 - MER45A DNA Tip100 -2 176 97 8 1354 312 158 0 0 chr6 100886640 100886716 -48630321 + T-rich Low_complexity Low_complexity 1 76 0 8 1354 1154 75 0 13 chr6 100886716 100886865 -48630172 - B1_Mus2 SINE Alu 0 147 1 8 1354 457 262 19 9 chr6 100887332 100887440 -48629597 - MLT1A0 LTR MaLR 0 365 257 8 1354 277 333 111 0 chr6 100887552 100887678 -48629359 - MLT1A0 LTR MaLR -162 203 64 8 1354 504 0 0 0 chr6 100887686 100887742 -48629295 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 8 1354 303 93 0 0 chr6 100887823 100887866 -48629171 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1354 607 312 7 0 chr6 100887866 100888004 -48629033 - RSINE1 SINE B4 -25 140 2 8 1354 243 327 0 0 chr6 100888004 100888057 -48628980 - PB1 SINE Alu -73 54 2 8 1354 368 214 48 0 chr6 100889085 100889188 -48627849 + LTR82B Low_complexity ERVL 2 109 -721 8 1354 244 268 62 73 chr6 100889400 100889597 -48627440 - MLT1G LTR MaLR -227 364 173 8 1354 667 280 149 72 chr6 100889622 100889957 -48627080 + MLT2D LTR ERVL 1 361 -53 8 1354 1657 165 48 19 chr6 100890879 100891188 -48625849 - MTD LTR MaLR -8 411 94 8 1354 188 162 0 0 chr6 100891218 100891255 -48625782 + L2a LINE L2 3389 3425 -1 8 1354 225 306 16 107 chr6 100891606 100891654 -48625383 - B4A SINE B4 -94 198 89 8 1354 286 217 38 0 chr6 100891654 100891727 -48625310 - B1_Mus2 SINE Alu -65 84 4 8 1354 738 265 4 73 chr6 100891903 100892135 -48624902 + MER20 DNA MER1_type 2 217 -2 8 1354 756 224 0 7 chr6 100892871 100893019 -48624018 - B1_Mur1 SINE Alu 0 149 3 8 1354 23 0 0 0 chr6 100893655 100893678 -48623359 + AT_rich Low_complexity Low_complexity 1 23 0 8 1354 669 189 0 30 chr6 100894169 100894300 -48622737 - B1_Mur2 SINE Alu -1 148 22 8 1354 287 231 14 38 chr6 100894895 100894991 -48622046 + BC1_Mm scRNA scRNA 2 88 -64 8 1354 259 274 0 0 chr6 100895064 100895126 -48621911 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1354 420 111 0 0 chr6 100895149 100895212 -48621825 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 8 1354 769 154 0 0 chr6 100895222 100895358 -48621679 - B1_Mur3 SINE Alu 0 149 14 8 1354 444 330 81 0 chr6 100895365 100895538 -48621499 - B4A SINE B4 -60 232 46 8 1354 222 160 0 0 chr6 100895718 100895768 -48621269 + T-rich Low_complexity Low_complexity 1 50 0 8 1354 475 228 16 24 chr6 100896003 100896129 -48620908 - RMER20B LTR ERVK -502 125 1 8 1354 319 308 24 57 chr6 100896180 100896304 -48620733 + B1F1 SINE Alu 1 120 -29 8 1354 428 184 10 0 chr6 100896312 100896415 -48620622 + (CCA)n Simple_repeat Simple_repeat 1 104 0 8 1354 1139 225 5 0 chr6 100897078 100897291 -48619746 - B3 SINE B2 -2 214 1 8 1354 290 244 0 44 chr6 100897565 100897655 -48619382 + CT-rich Low_complexity Low_complexity 5 90 0 8 1354 226 245 0 0 chr6 100898763 100898816 -48618221 - Lx8 LINE L1 -2 7471 7419 8 1354 180 0 0 0 chr6 100898840 100898860 -48618177 + (C)n Simple_repeat Simple_repeat 1 20 0 8 1354 785 143 0 14 chr6 100899163 100899305 -48617732 + CT-rich Low_complexity Low_complexity 1 140 0 8 1354 459 177 129 26 chr6 100899305 100899421 -48617616 - B1_Mur3 SINE Alu -1 148 21 8 1354 250 352 8 8 chr6 100899426 100899549 -48617488 + (TG)n Simple_repeat Simple_repeat 2 124 0 8 1354 285 321 0 26 chr6 100899558 100899639 -48617398 - B4 SINE B4 0 292 215 8 1354 513 0 0 0 chr6 100899639 100899696 -48617341 + (TTCTC)n Simple_repeat Simple_repeat 4 60 0 8 1354 207 0 0 0 chr6 100899698 100899721 -48617316 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 8 1354 267 347 0 93 chr6 100899721 100899744 -48617293 - B4A SINE B4 -75 217 195 8 1354 460 210 8 104 chr6 100899783 100899913 -48617124 - B3 SINE B2 -76 119 3 8 1354 713 286 46 41 chr6 100899913 100900129 -48616908 - B4 SINE B4 -74 218 2 8 1354 792 156 0 0 chr6 100900158 100900286 -48616751 - B2_Mm2 SINE B2 -65 130 3 8 1354 201 74 0 0 chr6 100900317 100900344 -48616693 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1354 503 151 133 8 chr6 100900348 100900468 -48616569 - B1_Mus2 SINE Alu 0 147 13 8 1354 245 245 52 78 chr6 100900671 100900786 -48616251 - PB1D10 SINE Alu -3 114 3 8 1354 485 311 247 6 chr6 100900995 100901326 -48615711 - MER97c DNA MER1_type? -485 605 195 9 1354 309 314 174 7 chr6 100901418 100901556 -48615481 + RSINE1 SINE B4 3 163 -2 9 1354 352 305 0 0 chr6 100901556 100901687 -48615350 + (CAGAGA)n Simple_repeat Simple_repeat 5 135 0 9 1354 186 217 0 0 chr6 100901701 100901770 -48615267 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1354 375 248 41 0 chr6 100901783 100901904 -48615133 - MER2 DNA MER2_type -139 206 81 9 1354 282 239 156 0 chr6 100902180 100902289 -48614748 + MER97c DNA MER1_type? 456 581 -509 9 1354 198 0 0 0 chr6 100903055 100903077 -48613960 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1354 245 233 91 23 chr6 100903698 100903786 -48613251 + LTR33A_ LTR ERVL 3 96 -435 9 1354 354 354 57 12 chr6 100903845 100904153 -48612884 + LTR33A_ LTR ERVL 192 531 0 9 1354 470 276 56 125 chr6 100904205 100904437 -48612600 - B3A SINE B2 0 216 1 9 1354 231 114 0 0 chr6 100905035 100905070 -48611967 + (ATG)n Simple_repeat Simple_repeat 1 35 0 9 1354 333 169 0 0 chr6 100905073 100905132 -48611905 - B1_Mm SINE Alu -8 139 81 9 1354 249 31 0 0 chr6 100905510 100905517 -48611520 + (TA)n Simple_repeat Simple_repeat 1 7 0 9 1354 297 0 0 0 chr6 100905517 100905550 -48611487 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1354 249 31 0 0 chr6 100905550 100905574 -48611463 + (TA)n Simple_repeat Simple_repeat 1 24 0 9 1354 597 76 0 0 chr6 100905574 100905666 -48611371 + (GA)n Simple_repeat Simple_repeat 2 93 0 9 1354 265 275 25 0 chr6 100906163 100906243 -48610794 - ID4 SINE ID -1 82 1 9 1354 218 196 0 0 chr6 100906480 100906531 -48610506 + T-rich Low_complexity Low_complexity 1 51 0 9 1354 791 188 14 7 chr6 100906605 100906750 -48610287 + B1_Mus2 SINE Alu 2 147 0 9 1354 196 53 0 50 chr6 100906756 100906796 -48610241 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 9 1354 24 53 0 0 chr6 100907483 100907521 -48609516 + AT_rich Low_complexity Low_complexity 1 38 0 9 1354 1563 174 11 0 chr6 100907571 100907835 -48609202 - Lx9 LINE L1 -320 7324 7058 9 1354 690 167 59 102 chr6 100907821 100907954 -48609083 + Lx9 LINE L1 7339 7477 -167 9 1354 351 0 0 0 chr6 100907954 100907993 -48609044 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1354 690 167 59 102 chr6 100907993 100908046 -48608991 + Lx9 LINE L1 7478 7516 -128 9 1354 451 200 11 34 chr6 100908051 100908227 -48608810 + (CATATA)n Simple_repeat Simple_repeat 2 173 0 9 1354 360 172 21 0 chr6 100908259 100908352 -48608685 + Lx9 LINE L1 7458 7552 -92 9 1354 522 139 59 0 chr6 100908352 100908453 -48608584 - Lx2 LINE L1 -1 6996 6890 9 1354 456 87 118 11 chr6 100908449 100908542 -48608495 + Lx9 LINE L1 7537 7639 -5 9 1354 865 268 57 21 chr6 100908845 100909127 -48607910 - B4A SINE B4 0 292 1 9 1354 668 256 38 54 chr6 100910209 100910395 -48606642 + ID_B1 SINE B4 22 204 -20 9 1354 543 31 0 0 chr6 100910405 100910470 -48606567 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 9 1354 385 285 33 53 chr6 100910683 100910835 -48606202 - RSINE1 SINE B4 0 165 17 9 1354 374 195 45 11 chr6 100910905 100910993 -48606044 + RSINE1 SINE B4 22 112 -53 9 1354 474 18 0 0 chr6 100911033 100911088 -48605949 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1354 423 0 0 0 chr6 100911088 100911134 -48605903 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 1354 2742 202 45 8 chr6 100911241 100911804 -48605233 + Lx5 LINE L1 6478 7045 -5 9 1354 285 105 26 26 chr6 100912132 100912210 -48604827 + A-rich Low_complexity Low_complexity 1 78 0 9 1354 345 76 0 0 chr6 100912686 100912752 -48604285 - MT2A LTR ERVL -1 532 467 9 1354 25 90 0 0 chr6 100912772 100912839 -48604198 + AT_rich Low_complexity Low_complexity 1 67 0 9 1354 1081 92 35 0 chr6 100912999 100913172 -48603865 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 9 1354 971 238 16 55 chr6 100913222 100913285 -48603752 - MT2A LTR ERVL -61 540 430 9 1354 1668 189 84 20 chr6 100913285 100913642 -48603395 - RLTR14 LTR ERV1 0 382 3 9 1354 1143 191 124 25 chr6 100913642 100913989 -48603048 - MT2A LTR ERVL -91 510 1 9 1354 967 244 9 9 chr6 100914245 100914460 -48602577 - B3 SINE B2 0 216 2 9 1354 2253 105 116 6 chr6 100914744 100915098 -48601939 + ORR1B1 LTR MaLR 1 393 -1 9 1354 378 0 0 0 chr6 100915296 100915338 -48601699 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1354 312 351 19 31 chr6 100915401 100915560 -48601477 + MER45A DNA Tip100 22 178 0 9 1354 290 390 51 17 chr6 100915804 100915979 -48601058 + MER20B DNA MER1_type 34 214 -569 9 1354 819 274 56 59 chr6 100916019 100916306 -48600731 - B4 SINE B4 -6 286 1 9 1354 275 315 63 69 chr6 100916716 100916890 -48600147 + MER58C DNA MER1_type 1 173 -42 9 1354 415 149 0 0 chr6 100916892 100916959 -48600078 + (TC)n Simple_repeat Simple_repeat 2 68 0 9 1354 740 185 0 6 chr6 100916962 100917125 -48599912 + CT-rich Low_complexity Low_complexity 1 162 0 9 1354 236 222 135 27 chr6 100918582 100918693 -48598344 - MLT1L LTR MaLR -121 489 367 9 1354 392 0 21 0 chr6 100919447 100919495 -48597542 + (TA)n Simple_repeat Simple_repeat 2 50 0 9 1354 225 259 17 17 chr6 100920342 100920401 -48596636 + GA-rich Low_complexity Low_complexity 3 61 0 9 1354 192 125 0 0 chr6 100921478 100921510 -48595527 + (TTA)n Simple_repeat Simple_repeat 2 33 0 9 1354 997 279 45 46 chr6 100922776 100923271 -48593766 - Lx7 LINE L1 -1530 6114 5621 9 1354 195 69 0 0 chr6 100924104 100924133 -48592904 + (C)n Simple_repeat Simple_repeat 1 29 0 9 1354 426 217 0 0 chr6 100924149 100924269 -48592768 + (CCA)n Simple_repeat Simple_repeat 1 120 0 9 1354 211 50 49 24 chr6 100924429 100924470 -48592567 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 9 1354 668 270 69 0 chr6 100924680 100924869 -48592168 + Tigger5 DNA MER2_type 2 203 -2203 9 1354 413 297 9 0 chr6 100924901 100925012 -48592025 + Tigger5 DNA MER2_type 2291 2402 -4 9 1355 351 0 0 0 chr6 100925763 100925802 -48591235 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1355 208 192 39 0 chr6 100925831 100925883 -48591154 + (TCTG)n Simple_repeat Simple_repeat 1 54 0 9 1355 372 169 0 0 chr6 100927008 100927085 -48589952 + A-rich Low_complexity Low_complexity 1 77 0 9 1355 333 0 0 0 chr6 100927776 100927813 -48589224 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1355 471 308 33 76 chr6 100927841 100928143 -48588894 - B4 SINE B4 -11 281 2 9 1355 1038 235 51 13 chr6 100928243 100928480 -48588557 + B4A SINE B4 1 246 -46 9 1355 1196 121 47 83 chr6 100928480 100928733 -48588304 + Lx LINE L1 6411 6654 0 9 1355 198 0 0 0 chr6 100928794 100928816 -48588221 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1355 298 181 27 14 chr6 100929031 100929104 -48587933 + MADE2 DNA Mariner 1 74 -6 9 1355 462 282 8 181 chr6 100929667 100929905 -48587132 - B3A SINE B2 -1 197 1 9 1355 324 0 0 0 chr6 100929945 100929981 -48587056 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1355 782 247 15 91 chr6 100929987 100930250 -48586787 - B4 SINE B4 0 292 50 9 1355 4847 71 3 0 chr6 100930610 100931228 -48585809 + L1_Mus1 LINE L1 5946 6565 -2 9 1355 362 317 67 97 chr6 100931467 100931736 -48585301 + MLT1C LTR MaLR 122 459 -8 9 1355 566 262 67 52 chr6 100931864 100932057 -48584980 - RMER30 DNA MER1_type 0 202 7 9 1355 351 244 24 71 chr6 100932349 100932433 -48584604 + RSINE1 SINE B4 2 81 -211 9 1355 977 76 7 0 chr6 100932444 100932588 -48584449 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 9 1355 24 0 0 0 chr6 100933474 100933498 -48583539 + AT_rich Low_complexity Low_complexity 1 24 0 9 1355 438 165 35 0 chr6 100934165 100934250 -48582787 - ID_B1 SINE B4 -5 219 132 9 1355 251 284 0 15 chr6 100934555 100934623 -48582414 + (TAAG)n Simple_repeat Simple_repeat 3 69 0 9 1355 399 324 99 66 chr6 100934852 100935034 -48582003 - B4 SINE B4 -21 271 84 9 1355 253 277 0 0 chr6 100935795 100935860 -48581177 - tRNA-Ala-GCY_ tRNA tRNA -3 72 8 9 1355 186 43 0 0 chr6 100936104 100936127 -48580910 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 9 1355 258 333 72 0 chr6 100936514 100936625 -48580412 + LTR82B Low_complexity ERVL 437 555 -275 9 1355 317 136 0 15 chr6 100936626 100936693 -48580344 + (TA)n Simple_repeat Simple_repeat 1 66 0 9 1355 333 0 0 0 chr6 100936695 100936732 -48580305 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1355 589 265 92 31 chr6 100937385 100937646 -48579391 - L1MC4a LINE L1 -16 7866 7590 9 1355 324 0 0 0 chr6 100937730 100937766 -48579271 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1355 351 0 0 0 chr6 100937766 100937804 -48579233 + (GA)n Simple_repeat Simple_repeat 1 39 0 9 1355 847 258 88 0 chr6 100937804 100938021 -48579016 - B4 SINE B4 -32 260 25 9 1355 312 326 77 17 chr6 100938023 100938257 -48578780 - L1MC4a LINE L1 -337 7545 7298 9 1355 315 85 0 0 chr6 100938336 100938383 -48578654 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 1355 396 305 38 0 chr6 100938398 100938503 -48578534 - Lx8 LINE L1 -208 7265 7157 9 1355 442 220 91 14 chr6 100938670 100938813 -48578224 + LTR50 LTR ERVL 1 154 -641 9 1355 337 343 156 41 chr6 100938919 100939162 -48577875 + LTR50 LTR ERVL 357 627 -168 9 1355 360 0 0 0 chr6 100939504 100939544 -48577493 + (TC)n Simple_repeat Simple_repeat 2 41 0 9 1355 632 284 88 83 chr6 100941189 100941562 -48575475 + MTEa LTR MaLR 5 379 0 9 1355 527 184 0 0 chr6 100942699 100942813 -48574224 - Lx9 LINE L1 0 7644 7531 9 1355 474 18 0 0 chr6 100942838 100942893 -48574144 + (TA)n Simple_repeat Simple_repeat 1 55 0 9 1355 1238 61 0 0 chr6 100944040 100944188 -48572849 - B1_Mus1 SINE Alu 0 148 1 9 1355 413 286 4 9 chr6 100944300 100944439 -48572598 + B3A SINE B2 74 211 -5 9 1355 623 282 59 0 chr6 100947113 100947283 -48569754 - B3A SINE B2 -12 186 7 9 1355 479 239 0 27 chr6 100948076 100948188 -48568849 - B1_Mur4 SINE Alu -7 143 35 9 1355 4120 127 98 11 chr6 100948221 100948917 -48568120 - RMER6A LTR ERVK 0 756 1 9 1355 542 276 7 7 chr6 100949720 100949862 -48567175 - B1F SINE Alu -2 147 6 9 1355 238 167 33 0 chr6 100949894 100949954 -48567083 + CT-rich Low_complexity Low_complexity 1 62 0 1 1355 385 301 62 58 chr6 100950238 100950481 -48566556 - B4A SINE B4 -8 284 41 1 1355 204 287 78 69 chr6 100950694 100950810 -48566227 + MIR SINE MIR 19 135 -73 1 1355 234 91 0 0 chr6 100950926 100950959 -48566078 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 1 1355 381 261 75 8 chr6 100950963 100951083 -48565954 - ID_B1 SINE B4 -14 210 83 1 1355 222 69 0 0 chr6 100952375 100952404 -48564633 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1355 263 134 0 29 chr6 100952404 100952473 -48564564 + (TCTCTG)n Simple_repeat Simple_repeat 2 68 0 1 1355 283 225 0 0 chr6 100952474 100952545 -48564492 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1355 563 242 6 0 chr6 100952546 100952703 -48564334 + CT-rich Low_complexity Low_complexity 3 160 0 1 1355 486 240 118 71 chr6 100952779 100952990 -48564047 - B4A SINE B4 -70 222 2 1 1355 193 310 79 10 chr6 100953068 100953169 -48563868 + L2a LINE L2 3319 3426 0 1 1355 249 257 26 44 chr6 100954522 100954636 -48562401 + (TATG)n Simple_repeat Simple_repeat 1 112 0 1 1355 453 356 100 11 chr6 100955222 100955503 -48561534 - MLT2B1 LTR ERVL -105 415 110 1 1355 351 0 0 0 chr6 100955503 100955542 -48561495 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1355 202 140 0 23 chr6 100955830 100955874 -48561163 + T-rich Low_complexity Low_complexity 3 45 0 1 1355 1074 95 0 39 chr6 100955874 100956027 -48561010 - B1_Mus2 SINE Alu 0 147 1 1 1355 214 279 0 0 chr6 100956121 100956182 -48560855 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1355 275 325 84 28 chr6 100956500 100956761 -48560276 + L1M4b LINE L1 1263 1707 -5395 1 1355 36136 35 0 0 chr6 100957487 100963073 -48553964 + L1Md_T LINE L1 1 5587 -299 1 1355 9091 9 0 0 chr6 100963075 100964071 -48552966 + L1Md_T LINE L1 5590 6585 0 1 1355 738 270 148 12 chr6 100964477 100965263 -48551774 + L1MB8 LINE L1 5079 6001 -177 1 1355 1018 195 135 56 chr6 100965462 100965750 -48551287 - RMER19C LTR ERVK 0 611 301 1 1355 434 231 75 140 chr6 100965897 100966083 -48550954 - MTEa LTR MaLR 0 379 206 1 1355 3098 215 23 43 chr6 100966644 100967344 -48549693 + RMER1C Other Other 657 1342 0 1 1355 329 326 22 22 chr6 100967580 100967718 -48549319 - MTEa LTR MaLR -221 138 1 1 1355 1038 319 114 62 chr6 100967718 100967795 -48549242 - MTEa-int LTR MaLR -53 1527 1452 1 1355 6130 71 13 1 chr6 100967795 100968581 -48548456 - L1_Mus2 LINE L1 0 6566 5772 1 1355 1038 319 114 62 chr6 100968581 100969089 -48547948 - MTEa-int LTR MaLR -129 1451 910 1 1355 934 311 41 53 chr6 100969205 100969666 -48547371 - L1_Mur3 LINE L1 -444 5436 5010 1 1355 385 222 80 22 chr6 100969671 100969809 -48547228 + L1MA4 LINE L1 5780 5925 -375 1 1355 437 364 19 19 chr6 100970886 100971099 -48545938 - MER20 DNA MER1_type -5 214 2 1 1355 396 0 0 0 chr6 100971972 100972016 -48545021 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1355 23 0 0 0 chr6 100972359 100972382 -48544655 + AT_rich Low_complexity Low_complexity 1 23 0 1 1355 364 301 11 11 chr6 100973073 100973167 -48543870 - ID_B1 SINE B4 -38 186 93 1 1355 1305 85 0 0 chr6 100973170 100973575 -48543462 + (TG)n Simple_repeat Simple_repeat 1 405 0 1 1355 755 260 107 28 chr6 100973620 100973873 -48543164 - B4A SINE B4 -18 274 2 1 1355 290 239 0 0 chr6 100974002 100974069 -48542968 - MIR SINE MIR -93 169 103 1 1355 229 306 0 0 chr6 100974256 100974328 -48542709 - MIR SINE MIR -27 235 164 1 1355 25 0 0 0 chr6 100974702 100974727 -48542310 + AT_rich Low_complexity Low_complexity 1 25 0 1 1355 1146 213 94 66 chr6 100974756 100975149 -48541888 - Lx8 LINE L1 -286 7187 6784 1 1355 2143 160 67 8 chr6 100975700 100976059 -48540978 - ORR1C2 LTR MaLR -4 380 1 1 1355 765 41 0 0 chr6 100976400 100976497 -48540540 + (GA)n Simple_repeat Simple_repeat 2 98 0 1 1355 396 0 0 0 chr6 100976810 100976854 -48540183 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1355 278 291 13 0 chr6 100976856 100976935 -48540102 - B4A SINE B4 -15 277 198 1 1355 282 315 11 21 chr6 100976991 100977085 -48539952 - B4A SINE B4 -194 98 6 1 1355 345 313 140 0 chr6 100979470 100979620 -48537417 - MER5A DNA MER1_type 0 189 19 1 1355 202 196 0 42 chr6 100980058 100980091 -48536946 + polypyrimidine Low_complexity Low_complexity 16 48 0 1 1355 1076 116 0 0 chr6 100980091 100980237 -48536800 - B1_Mus2 SINE Alu -1 146 1 1 1355 202 196 0 42 chr6 100980237 100980251 -48536786 + polypyrimidine Low_complexity Low_complexity 3 15 0 1 1355 252 120 0 0 chr6 100981156 100981206 -48535831 + (T)n Simple_repeat Simple_repeat 1 50 0 1 1355 677 169 88 7 chr6 100981290 100981427 -48535610 - MTC LTR MaLR -53 368 221 1 1355 479 100 0 0 chr6 100981446 100981526 -48535511 - L1Md_F2 LINE L1 0 6582 6503 1 1355 229 32 32 0 chr6 100981526 100981557 -48535480 - L1_Mus1 LINE L1 -171 6396 6365 1 1355 1284 71 6 0 chr6 100981541 100981709 -48535328 + L1_Mus1 LINE L1 6178 6346 -220 1 1355 348 24 0 0 chr6 100981722 100981763 -48535274 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1355 257 51 26 0 chr6 100982113 100982152 -48534885 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1355 251 259 0 0 chr6 100982742 100982800 -48534237 - MER3 DNA MER1_type 0 209 152 1 1355 315 146 0 0 chr6 100985136 100985191 -48531846 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1355 671 348 52 42 chr6 100985198 100985486 -48531551 - B4 SINE B4 0 292 2 1 1355 1193 220 134 9 chr6 100985685 100986006 -48531031 + ORR1D2 LTR MaLR 1 361 -9 1 1355 1269 65 0 0 chr6 100986006 100986174 -48530863 + (CA)n Simple_repeat Simple_repeat 2 169 0 1 1355 1478 175 76 35 chr6 100986488 100986802 -48530235 + ORR1C1 LTR MaLR 46 372 -6 1 1355 245 329 0 0 chr6 100987757 100987836 -48529201 + MER94 DNA AcHobo 26 104 -30 1 1355 194 341 11 43 chr6 100987912 100988004 -48529033 + MIRb SINE MIR 100 188 -80 1 1355 293 339 82 43 chr6 100988435 100988691 -48528346 + LTR73 LTR ERV1 26 291 -281 1 1355 2997 122 104 44 chr6 100990600 100990652 -48526385 + MT2B LTR ERVL 1 52 -549 1 1355 2393 63 119 11 chr6 100990652 100991004 -48526033 - RLTR10 LTR ERVK 0 390 1 1 1355 2997 122 104 44 chr6 100991004 100991518 -48525519 + MT2B LTR ERVL 53 601 0 1 1355 269 301 42 21 chr6 100991826 100991921 -48525116 + MER34B-int LTR ERV1 2001 2097 -3259 1 1355 760 261 10 74 chr6 100991957 100991978 -48525059 - B3 SINE B2 -25 191 174 1 1355 351 78 0 0 chr6 100991978 100992029 -48525008 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1355 760 261 10 74 chr6 100992029 100992210 -48524827 - B3 SINE B2 -43 173 2 1 1355 1599 288 64 26 chr6 100992358 100992933 -48524104 + Lx8 LINE L1 6877 7473 0 1 1355 21 0 0 0 chr6 100992982 100993003 -48524034 + AT_rich Low_complexity Low_complexity 1 21 0 1 1355 206 62 0 30 chr6 100994022 100994055 -48522982 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1355 389 344 71 42 chr6 100994650 100994987 -48522050 + LTR73 LTR ERV1 26 372 -200 1 1355 474 65 0 0 chr6 100995481 100995543 -48521494 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1355 611 156 0 8 chr6 100995886 100996009 -48521028 + (TCTA)n Simple_repeat Simple_repeat 4 125 0 1 1355 305 350 40 35 chr6 100997411 100997639 -48519398 - MIR SINE MIR -24 238 10 1 1355 404 155 0 0 chr6 100998037 100998108 -48518929 - B4 SINE B4 -221 71 1 1 1355 216 374 61 0 chr6 100998448 100998563 -48518474 + MIR SINE MIR 30 151 -57 1 1355 316 209 73 37 chr6 100999098 100999207 -48517830 + MER5A1 DNA MER1_type 13 125 -41 1 1355 300 235 53 12 chr6 101000010 101000125 -48516912 - Lx5 LINE L1 -1206 5844 5690 1 1355 560 204 6 0 chr6 101000125 101000301 -48516736 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 2 1355 711 254 64 81 chr6 101000337 101000633 -48516404 - Lx5 LINE L1 -129 5718 5428 1 1355 337 217 339 41 chr6 101000640 101000861 -48516176 - Lx9 LINE L1 -7 7637 7351 3 1355 11583 52 1 3 chr6 101000953 101003100 -48513937 - L1Md_F2 LINE L1 0 6582 4439 4 1355 305 100 0 20 chr6 101003123 101003174 -48513863 + (TCCCC)n Simple_repeat Simple_repeat 2 51 0 5 1355 325 324 27 0 chr6 101003278 101003389 -48513648 - ID_B1 SINE B4 -7 217 104 6 1355 375 23 0 0 chr6 101003649 101003693 -48513344 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1355 333 93 0 0 chr6 101003701 101003755 -48513282 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1355 326 231 21 52 chr6 101003778 101003874 -48513163 - B3A SINE B2 -92 106 14 9 1355 238 373 56 17 chr6 101003920 101004100 -48512937 + MER5A DNA MER1_type 1 187 -2 1 1355 309 224 60 0 chr6 101004355 101004422 -48512615 - L1MA7 LINE L1 -48 6243 6173 1 1355 269 364 59 13 chr6 101005641 101005794 -48511243 + MER117 DNA MER1_type 5 164 -33 1 1355 453 288 94 17 chr6 101005889 101006069 -48510968 - B3A SINE B2 -4 194 1 1 1355 774 293 28 14 chr6 101006164 101006382 -48510655 - MER58A DNA MER1_type -3 221 1 1 1355 476 32 16 0 chr6 101007053 101007115 -48509922 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1355 259 214 233 0 chr6 101007117 101007220 -48509817 - RSINE1 SINE B4 -33 132 6 1 1355 705 319 81 5 chr6 101007222 101007433 -48509604 - B4A SINE B4 -61 231 5 1 1355 243 188 0 0 chr6 101007811 101007859 -48509178 + C-rich Low_complexity Low_complexity 2 49 0 1 1355 284 283 35 28 chr6 101007866 101008008 -48509029 + CT-rich Low_complexity Low_complexity 4 146 0 1 1355 276 329 93 0 chr6 101008470 101008610 -48508427 - MER58A DNA MER1_type -58 166 14 2 1355 337 277 18 9 chr6 101009941 101010054 -48506983 - MLT1K LTR MaLR -15 580 467 2 1355 6681 260 38 8 chr6 101010317 101012079 -48504958 + IAP-d-int LTR ERVK 22 1835 -4707 2 1355 1115 210 48 33 chr6 101012079 101012418 -48504619 - RLTR10D LTR ERVK -10 401 1 2 1355 248 0 0 30 chr6 101012624 101012657 -48504380 + (TTTTG)n Simple_repeat Simple_repeat 5 36 0 2 1355 449 327 96 40 chr6 101012762 101013189 -48503848 - RMER5 LTR ERV1 -68 466 16 2 1355 860 241 29 19 chr6 101013979 101014186 -48502851 - B3 SINE B2 -6 210 2 2 1355 269 26 0 26 chr6 101014214 101014253 -48502784 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 2 1355 300 120 0 0 chr6 101014797 101014847 -48502190 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1355 316 270 76 32 chr6 101015050 101015207 -48501830 - RSINE1 SINE B4 0 165 2 2 1355 382 299 172 26 chr6 101016086 101016278 -48500759 - ID_B1 SINE B4 -4 220 1 3 1355 282 113 45 36 chr6 101016494 101016604 -48500433 + (TA)n Simple_repeat Simple_repeat 1 111 0 3 1355 298 337 113 16 chr6 101016628 101016884 -48500153 - MER2 DNA MER2_type -21 324 44 3 1355 197 253 97 78 chr6 101017483 101017586 -48499451 + MIR SINE MIR 124 228 -34 3 1355 557 275 12 66 chr6 101017984 101018185 -48498852 - B3A SINE B2 -14 202 9 3 1355 1257 71 14 133 chr6 101018249 101018460 -48498577 + B2_Mm2 SINE B2 3 188 -7 3 1355 2983 179 104 16 chr6 101018482 101019156 -48497881 + Lx9 LINE L1 6912 7644 0 3 1355 901 160 129 6 chr6 101019215 101019385 -48497652 + Lx9 LINE L1 7080 7270 -374 3 1355 501 193 26 35 chr6 101019395 101019508 -48497529 - B3 SINE B2 -104 112 1 3 1355 409 287 106 8 chr6 101020482 101020605 -48496432 - B4A SINE B4 -58 234 100 3 1355 544 217 33 16 chr6 101021043 101021165 -48495872 - B4 SINE B4 -18 274 151 4 1355 291 316 44 50 chr6 101022668 101022828 -48494209 + MER58A DNA MER1_type 9 167 -57 4 1355 347 247 51 66 chr6 101022885 101023027 -48494010 + L1_Mur3 LINE L1 5321 5495 -661 4 1355 363 261 131 25 chr6 101023054 101023176 -48493861 + RSINE1 SINE B4 31 165 0 4 1355 525 158 0 0 chr6 101023183 101023303 -48493734 + (CA)n Simple_repeat Simple_repeat 2 121 0 4 1355 301 71 0 0 chr6 101023304 101023346 -48493691 + HAL1-3A_ME LINE L1 1977 2018 -840 4 1355 777 165 0 0 chr6 101023351 101023613 -48493424 + (CA)n Simple_repeat Simple_repeat 1 262 0 4 1355 621 309 47 96 chr6 101023629 101024098 -48492939 + L1MA5 LINE L1 5484 5929 -371 4 1355 437 0 19 0 chr6 101024192 101024245 -48492792 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1355 987 241 171 22 chr6 101024272 101024594 -48492443 + ORR1D2 LTR MaLR 1 370 0 4 1355 707 133 34 17 chr6 101025278 101025454 -48491583 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 5 1355 400 183 21 14 chr6 101026235 101026379 -48490658 + (TG)n Simple_repeat Simple_repeat 2 146 0 5 1355 451 296 81 65 chr6 101026464 101026724 -48490313 - B4 SINE B4 -28 264 1 5 1355 219 114 0 0 chr6 101026885 101026920 -48490117 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 5 1355 783 279 33 86 chr6 101026931 101027233 -48489804 - B4 SINE B4 -6 286 1 5 1355 265 279 86 29 chr6 101027599 101027739 -48489298 + B4A SINE B4 125 272 -20 5 1355 695 127 20 7 chr6 101027772 101027923 -48489114 + (CA)n Simple_repeat Simple_repeat 2 154 0 5 1355 384 22 0 0 chr6 101028120 101028165 -48488872 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1355 306 194 0 0 chr6 101028165 101028227 -48488810 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1355 216 234 61 30 chr6 101028934 101029000 -48488037 - L2a LINE L2 -1 3425 3358 5 1355 367 167 22 0 chr6 101029707 101029797 -48487240 + (CCA)n Simple_repeat Simple_repeat 3 94 0 6 1355 330 263 67 8 chr6 101029816 101029950 -48487087 + HAL1-2a_MD LINE L1 2351 2492 -532 6 1355 219 220 0 0 chr6 101029950 101030000 -48487037 + (CCA)n Simple_repeat Simple_repeat 1 50 0 6 1355 298 243 100 0 chr6 101030000 101030070 -48486967 - ID4_ SINE ID -4 79 3 6 1355 218 288 34 0 chr6 101031434 101031493 -48485544 + B4A SINE B4 1 61 -231 6 1355 208 295 0 32 chr6 101031501 101031564 -48485473 + (CATA)n Simple_repeat Simple_repeat 4 64 0 6 1355 242 194 14 0 chr6 101031567 101031639 -48485398 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 1355 926 276 67 45 chr6 101032451 101032804 -48484233 + ORR1E LTR MaLR 1 421 0 6 1355 255 103 0 0 chr6 101033000 101033039 -48483998 + (CAA)n Simple_repeat Simple_repeat 1 39 0 6 1355 265 207 0 0 chr6 101033413 101033471 -48483566 - ID2 SINE ID -22 61 4 6 1355 1143 81 17 0 chr6 101034036 101034209 -48482828 + (TTC)n Simple_repeat Simple_repeat 3 178 0 7 1355 317 28 0 90 chr6 101034232 101034310 -48482727 + (TTC)n Simple_repeat Simple_repeat 3 73 0 7 1355 7360 91 48 2 chr6 101034314 101035979 -48481058 - L1_Mus3 LINE L1 -12 6626 4885 7 1355 267 79 0 0 chr6 101036280 101036318 -48480719 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1355 333 0 0 0 chr6 101036318 101036354 -48480683 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 1355 471 285 129 17 chr6 101037087 101037319 -48479718 - L1MA5 LINE L1 -362 5938 5681 7 1355 275 307 0 0 chr6 101039114 101039189 -48477848 - ID4_ SINE ID -6 77 3 7 1355 24 32 0 0 chr6 101039305 101039336 -48477701 + AT_rich Low_complexity Low_complexity 1 31 0 7 1355 191 114 29 0 chr6 101039414 101039449 -48477588 + (TA)n Simple_repeat Simple_repeat 1 36 0 7 1355 454 248 17 58 chr6 101039573 101039693 -48477344 + PB1D10 SINE Alu 3 117 0 7 1355 750 351 43 22 chr6 101039756 101040170 -48476867 - MLT1J LTR MaLR -44 468 46 7 1355 207 69 0 0 chr6 101040353 101040382 -48476655 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1355 453 185 8 16 chr6 101040398 101040524 -48476513 + (TA)n Simple_repeat Simple_repeat 2 126 0 8 1355 721 295 22 9 chr6 101041190 101041419 -48475618 - B4A SINE B4 -3 289 58 8 1355 713 262 50 20 chr6 101041671 101041870 -48475167 - B3 SINE B2 -6 210 6 8 1355 1052 95 0 12 chr6 101041990 101042150 -48474887 + (TCTCCC)n Simple_repeat Simple_repeat 3 160 0 8 1355 245 57 0 0 chr6 101043071 101043106 -48473931 - URR1B DNA MER1_type -1 224 190 8 1355 923 297 44 17 chr6 101043110 101043408 -48473629 - Lx6 LINE L1 0 7460 7155 8 1355 315 0 0 0 chr6 101043409 101043444 -48473593 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1355 1898 239 145 2 chr6 101043449 101043952 -48473085 + Lx6 LINE L1 6527 7101 -359 8 1355 1238 153 0 0 chr6 101043961 101044164 -48472873 - URR1B DNA MER1_type -21 204 2 8 1355 288 224 0 56 chr6 101044432 101044503 -48472534 + B1F SINE Alu 66 132 -17 8 1355 247 176 0 19 chr6 101044650 101044702 -48472335 + B4A SINE B4 183 233 -59 9 1355 565 333 40 4 chr6 101045053 101045303 -48471734 - RMER15 LTR ERVL -18 557 299 9 1355 1128 182 75 19 chr6 101045934 101046147 -48470890 + URR1A DNA MER1_type 2 226 0 9 1355 639 291 129 97 chr6 101046656 101047067 -48469970 - MLT1J LTR MaLR -82 430 7 9 1355 361 188 106 83 chr6 101047705 101047892 -48469145 - MER112 DNA MER1_type -27 234 20 9 1355 276 250 75 64 chr6 101048759 101048853 -48468184 + MIR SINE MIR 32 126 -136 9 1355 632 39 109 0 chr6 101049558 101049788 -48467249 + (GA)n Simple_repeat Simple_repeat 1 255 0 9 1355 219 36 0 0 chr6 101049789 101049817 -48467220 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 9 1355 298 274 15 121 chr6 101049825 101049963 -48467074 + PB1 SINE Alu 10 149 0 9 1355 402 252 135 15 chr6 101049969 101050102 -48466935 + B1F2 SINE Alu 1 149 0 9 1355 465 347 82 19 chr6 101050423 101050679 -48466358 + MLT1F LTR MaLR 79 350 -198 1 1355 239 325 45 82 chr6 101050944 101051077 -48465960 - MLT1F LTR MaLR -275 294 171 1 1355 506 306 28 133 chr6 101051077 101051174 -48465863 + B4 SINE B4 1 94 -198 1 1355 930 113 0 0 chr6 101051174 101051316 -48465721 + (TCCC)n Simple_repeat Simple_repeat 1 142 0 1 1355 506 306 28 133 chr6 101051316 101051542 -48465495 + B4 SINE B4 95 290 -2 1 1355 317 265 197 86 chr6 101053173 101053417 -48463620 + B4A SINE B4 4 274 -18 1 1355 511 304 0 31 chr6 101053589 101053752 -48463285 - ID_B1 SINE B4 0 224 67 1 1355 528 273 180 9 chr6 101055051 101055284 -48461753 + B4A SINE B4 2 274 -18 1 1355 205 250 12 12 chr6 101055317 101055398 -48461639 + (CCA)n Simple_repeat Simple_repeat 1 81 0 1 1355 304 278 42 14 chr6 101056330 101056467 -48460570 + L1MA9 LINE L1 6079 6223 -68 1 1356 1891 211 134 18 chr6 101057008 101057077 -48459960 - Lx9 LINE L1 0 7644 7573 1 1356 3138 153 179 96 chr6 101057077 101057913 -48459124 - RMER17A2 LTR ERVK 0 906 1 1 1356 1891 211 134 18 chr6 101057913 101058388 -48458649 - Lx9 LINE L1 -72 7572 7037 1 1356 265 206 29 14 chr6 101058611 101058680 -48458357 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1 1356 847 70 172 0 chr6 101058747 101058875 -48458162 - Lx4A LINE L1 -442 6616 6467 1 1356 2573 139 101 0 chr6 101058876 101059294 -48457743 + Lx4A LINE L1 6599 7058 0 1 1356 762 312 28 19 chr6 101059315 101059527 -48457510 - B4A SINE B4 -78 214 1 1 1356 459 86 40 73 chr6 101059530 101059680 -48457357 + (TATAA)n Simple_repeat Simple_repeat 5 149 0 1 1356 405 0 0 0 chr6 101059942 101059987 -48457050 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1356 364 310 134 0 chr6 101060173 101060344 -48456693 - Charlie4a DNA MER1_type -303 205 12 1 1356 391 326 0 0 chr6 101060316 101060408 -48456629 + RSINE1 SINE B4 55 146 -19 1 1356 225 0 0 0 chr6 101060418 101060443 -48456594 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 1 1356 432 0 0 0 chr6 101060579 101060627 -48456410 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1 1356 243 306 124 0 chr6 101060629 101060750 -48456287 - B1F1 SINE Alu -13 136 1 1 1356 558 222 17 0 chr6 101060954 101061071 -48455966 - MER2 DNA MER2_type -53 292 174 1 1356 22 56 0 0 chr6 101062474 101062510 -48454527 + AT_rich Low_complexity Low_complexity 1 36 0 1 1356 481 211 26 60 chr6 101062600 101062716 -48454321 - RSINE1 SINE B4 -39 126 15 1 1356 691 288 43 9 chr6 101062840 101063071 -48453966 + MER2 DNA MER2_type 97 335 -10 1 1356 514 189 19 19 chr6 101063117 101063225 -48453812 - ID_B1 SINE B4 0 224 117 1 1356 350 311 84 25 chr6 101063396 101063670 -48453367 - HAL1 LINE L1 -211 2296 2007 1 1356 502 227 19 51 chr6 101063654 101063812 -48453225 - Lx7 LINE L1 -12 7684 7532 1 1356 423 0 0 0 chr6 101063843 101063890 -48453147 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1356 6693 195 33 19 chr6 101063890 101065182 -48451855 - Lx7 LINE L1 -281 7415 6105 1 1356 339 360 63 71 chr6 101065657 101066136 -48450901 - HAL1 LINE L1 -1047 1460 986 1 1356 213 39 0 0 chr6 101066137 101066163 -48450874 + (TATG)n Simple_repeat Simple_repeat 1 26 0 1 1356 570 305 88 40 chr6 101066218 101066242 -48450795 - B4A SINE B4 -4 288 265 1 1356 4494 10 0 12 chr6 101066242 101066741 -48450296 - MT2_Mm LTR ERVL 0 493 1 1 1356 570 305 88 40 chr6 101066741 101066989 -48450048 - B4A SINE B4 -28 264 3 1 1356 212 311 22 0 chr6 101067217 101067307 -48449730 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1356 3055 52 44 3 chr6 101067322 101067706 -48449331 + MTB LTR MaLR 1 400 0 1 1356 27 49 0 0 chr6 101068404 101068445 -48448592 + AT_rich Low_complexity Low_complexity 1 41 0 1 1356 547 333 85 16 chr6 101068807 101069124 -48447913 + ORR1E LTR MaLR 1 339 -20 1 1356 388 180 16 0 chr6 101069252 101069374 -48447663 + (CACAG)n Simple_repeat Simple_repeat 1 124 0 1 1356 606 193 0 0 chr6 101069383 101069554 -48447483 + (CACAC)n Simple_repeat Simple_repeat 4 174 0 1 1356 6122 69 25 16 chr6 101069657 101070471 -48446566 + L1Md_F2 LINE L1 5762 6582 0 1 1356 216 0 0 0 chr6 101070813 101070837 -48446200 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1356 910 174 0 0 chr6 101070958 101071102 -48445935 - B1_Mus1 SINE Alu -2 146 3 1 1356 612 73 0 0 chr6 101071653 101071735 -48445302 + (TCCC)n Simple_repeat Simple_repeat 4 85 0 1 1356 252 170 0 0 chr6 101071736 101071789 -48445248 + CT-rich Low_complexity Low_complexity 4 56 0 1 1356 408 40 0 0 chr6 101071792 101071842 -48445195 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1356 514 342 6 11 chr6 101071842 101072025 -48445012 - ID_B1 SINE B4 -40 184 3 1 1356 335 336 152 16 chr6 101072461 101072718 -48444319 + LTR16E1 LTR ERVL 229 520 -18 1 1356 257 295 0 25 chr6 101074120 101074200 -48442837 + B1F SINE Alu 71 148 -1 1 1356 295 333 50 0 chr6 101074226 101074346 -48442691 - MER96B DNA hAT -3 414 289 1 1356 653 235 93 0 chr6 101074521 101074683 -48442354 + B3A SINE B2 5 181 -17 1 1356 378 0 0 0 chr6 101075110 101075152 -48441885 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1356 315 0 0 0 chr6 101075152 101075186 -48441851 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1356 996 152 112 34 chr6 101075966 101076171 -48440866 - URR1A DNA MER1_type -4 222 2 1 1356 347 282 48 8 chr6 101076205 101076330 -48440707 + RMER30 DNA MER1_type 35 164 -38 1 1356 360 0 0 0 chr6 101076750 101076790 -48440247 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1356 895 300 14 14 chr6 101076801 101077082 -48439955 - B4A SINE B4 -11 281 1 1 1356 744 43 0 0 chr6 101077503 101077595 -48439442 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1356 201 226 19 0 chr6 101077702 101077755 -48439282 + L2b LINE L2 3302 3355 -20 1 1356 495 0 0 0 chr6 101078025 101078080 -48438957 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 1 1356 761 272 20 78 chr6 101078579 101078834 -48438203 + B4 SINE B4 2 241 -51 1 1356 657 217 0 0 chr6 101078901 101079081 -48437956 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1356 2787 83 123 0 chr6 101079087 101079510 -48437527 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1356 742 225 127 0 chr6 101079719 101079890 -48437147 - B3 SINE B2 0 216 24 1 1356 733 257 86 34 chr6 101079890 101080209 -48436828 - RLTR18 LTR ERVK 0 616 189 1 1356 610 274 100 12 chr6 101080295 101080546 -48436491 - RLTR18 LTR ERVK -232 280 8 1 1356 343 277 30 118 chr6 101080906 101081041 -48435996 - RMER10B LTR ERVL -20 378 256 1 1356 354 45 0 0 chr6 101081236 101081280 -48435757 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1356 570 304 52 16 chr6 101081607 101081858 -48435179 - MLT1C LTR MaLR -35 432 173 1 1356 507 217 185 69 chr6 101081910 101082083 -48434954 - B3A SINE B2 -5 193 1 1 1356 546 324 43 11 chr6 101082124 101082308 -48434729 + B3 SINE B2 1 190 -26 1 1356 204 125 0 0 chr6 101082390 101082422 -48434615 + (TTC)n Simple_repeat Simple_repeat 2 33 0 1 1356 643 134 8 43 chr6 101083590 101083707 -48433330 + PB1D10 SINE Alu 5 117 0 1 1356 217 298 141 53 chr6 101083946 101084116 -48432921 - MER5A DNA MER1_type 0 189 5 1 1356 324 0 0 0 chr6 101084360 101084396 -48432641 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1356 275 227 53 0 chr6 101084398 101084473 -48432564 + (CATG)n Simple_repeat Simple_repeat 1 79 0 1 1356 533 266 92 26 chr6 101084502 101084730 -48432307 - B4A SINE B4 -17 275 33 1 1356 459 0 0 0 chr6 101084981 101085032 -48432005 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 1 1356 649 254 125 30 chr6 101085433 101085729 -48431308 - L1MB4 LINE L1 -256 5924 5601 1 1356 245 221 15 0 chr6 101085729 101085797 -48431240 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 1 1356 629 277 124 41 chr6 101085799 101086066 -48430971 - B4A SINE B4 0 292 4 1 1356 292 295 118 11 chr6 101086086 101086264 -48430773 - L1MB4 LINE L1 -614 5560 5364 1 1356 3024 8 5 90 chr6 101088350 101088751 -48428286 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1356 29745 17 1 0 chr6 101088751 101092019 -48425018 - IAPEz-int LTR ERVK 0 6481 3210 1 1356 8616 65 77 5 chr6 101092018 101093233 -48423804 - IAPEz-int LTR ERVK -5168 1313 67 1 1356 1038 84 154 12 chr6 101093204 101093367 -48423670 - IAPEz-int LTR ERVK -6285 196 8 1 1356 3024 8 5 90 chr6 101093367 101093768 -48423269 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1356 243 88 0 0 chr6 101093969 101094003 -48423034 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 1 1356 2538 181 64 11 chr6 101094003 101094471 -48422566 - Lx5 LINE L1 -5 7045 6553 1 1356 628 237 37 0 chr6 101094483 101094618 -48422419 - RSINE1 SINE B4 -10 155 16 1 1356 849 233 10 20 chr6 101095651 101095848 -48421189 - B3 SINE B2 0 216 22 1 1356 685 241 16 60 chr6 101095915 101096100 -48420937 - B3A SINE B2 -17 181 5 1 1356 797 300 10 77 chr6 101096683 101096994 -48420043 - B4A SINE B4 -2 290 1 1 1356 239 290 81 0 chr6 101097981 101098043 -48418994 + MamRep137 DNA TcMar? 331 397 -47 1 1356 300 53 0 0 chr6 101099948 101099986 -48417051 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1356 3435 38 2 0 chr6 101102322 101102717 -48414320 + MTA_Mm LTR MaLR 1 396 0 1 1356 295 262 102 46 chr6 101102965 101103073 -48413964 + B1F SINE Alu 1 114 -35 1 1356 210 325 86 26 chr6 101102970 101103087 -48413950 + B4A SINE B4 90 213 -79 1 1356 529 259 71 3 chr6 101103365 101103665 -48413372 + MTEa LTR MaLR 20 363 -16 1 1356 438 315 158 19 chr6 101104699 101105016 -48412021 + ERVL-E-int LTR ERVL 4696 5056 -611 1 1356 557 228 195 6 chr6 101105321 101105480 -48411557 + ID_B1 SINE B4 18 206 -18 1 1356 275 207 17 17 chr6 101106690 101106749 -48410288 - MamRep137 DNA TcMar? -380 64 6 1 1356 579 273 72 6 chr6 101109678 101109844 -48407193 + B4A SINE B4 10 186 -106 1 1356 1062 112 0 0 chr6 101113399 101113559 -48403478 + (TTTC)n Simple_repeat Simple_repeat 3 162 0 1 1356 456 19 0 0 chr6 101113651 101113704 -48403333 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1356 988 141 178 0 chr6 101114181 101114372 -48402665 + URR1B DNA MER1_type 1 225 0 1 1356 337 280 53 53 chr6 101114540 101114691 -48402346 + RSINE1 SINE B4 1 151 -14 1 1356 526 51 13 13 chr6 101114696 101114775 -48402262 + (TC)n Simple_repeat Simple_repeat 1 79 0 2 1356 324 0 0 0 chr6 101114779 101114815 -48402222 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1356 307 324 137 60 chr6 101115350 101115583 -48401454 + MER113 DNA MER1_type 147 397 -124 2 1356 2155 109 15 15 chr6 101116742 101117068 -48399969 + ORR1A4 LTR MaLR 4 329 0 2 1356 3708 199 106 14 chr6 101117197 101117699 -48399338 + Lx9 LINE L1 6703 7205 -439 2 1356 2004 184 43 40 chr6 101117699 101118119 -48398918 - MTC LTR MaLR 0 421 1 2 1356 3708 199 106 14 chr6 101118119 101118478 -48398559 + Lx9 LINE L1 7206 7643 -1 2 1356 333 125 0 0 chr6 101118528 101118584 -48398453 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1356 782 296 36 18 chr6 101118627 101118851 -48398186 - B4A SINE B4 -64 228 1 2 1356 260 53 0 26 chr6 101119071 101119110 -48397927 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1356 378 0 0 0 chr6 101119453 101119495 -48397542 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 2 1356 279 0 0 0 chr6 101119496 101119527 -48397510 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 2 1356 217 348 44 11 chr6 101121441 101121531 -48395506 - MIRc SINE MIR -56 212 120 2 1356 218 270 0 87 chr6 101122086 101122155 -48394882 + L4 LINE RTE 618 680 -1349 2 1356 569 261 22 0 chr6 101122680 101122818 -48394219 + MER113 DNA MER1_type 177 317 -204 2 1356 234 329 0 13 chr6 101123244 101123321 -48393716 + B4A SINE B4 202 277 -15 2 1356 216 0 0 0 chr6 101123574 101123598 -48393439 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1356 307 331 22 58 chr6 101126176 101126447 -48390590 + RSINE1 SINE B4 2 273 -19 2 1356 1154 242 65 9 chr6 101127695 101128072 -48388965 + Lx2B LINE L1 6219 6854 -146 2 1356 252 186 123 41 chr6 101128716 101128789 -48388248 - PB1D10 SINE Alu -8 109 31 2 1356 2153 100 42 0 chr6 101131162 101131471 -48385566 - Lx4A LINE L1 0 7058 6737 2 1356 186 196 87 0 chr6 101131584 101131630 -48385407 + L3 LINE CR1 895 944 -3545 2 1356 198 103 0 0 chr6 101131794 101131823 -48385214 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1356 343 250 95 66 chr6 101132036 101132050 -48384987 + B1F2 SINE Alu 1 141 -8 2 1356 427 267 41 24 chr6 101132050 101132173 -48384864 + ID_B1 SINE B4 92 216 -8 2 1356 22 0 0 0 chr6 101132875 101132897 -48384140 + AT_rich Low_complexity Low_complexity 1 22 0 2 1356 360 0 0 0 chr6 101133041 101133081 -48383956 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1356 733 134 0 22 chr6 101133101 101133284 -48383753 + GA-rich Low_complexity Low_complexity 2 180 0 2 1356 888 258 25 17 chr6 101133287 101133524 -48383513 - B4A SINE B4 -51 241 3 2 1356 1007 234 57 0 chr6 101133850 101134059 -48382978 - ID_B1 SINE B4 -1 223 3 2 1356 463 272 59 39 chr6 101136319 101136472 -48380565 + MIRb SINE MIR 42 197 -71 2 1356 271 250 138 15 chr6 101137701 101137766 -48379271 - ID4_ SINE ID 0 83 11 2 1356 209 343 0 0 chr6 101137766 101137833 -48379204 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 2 1356 721 331 11 11 chr6 101137840 101138029 -48379008 - B4A SINE B4 -2 290 102 2 1356 507 256 29 52 chr6 101138128 101138264 -48378773 - RSINE1 SINE B4 -22 143 11 2 1356 228 272 86 68 chr6 101138749 101138970 -48378067 + L1M5 LINE L1 4919 5143 -1003 2 1356 1433 177 108 38 chr6 101139287 101139716 -48377321 + RLTR11A LTR ERVK 1 492 -35 2 1356 278 294 0 0 chr6 101139672 101139740 -48377297 - Tigger7 DNA MER2_type -250 2241 2174 2 1356 1160 124 139 0 chr6 101140333 101140527 -48376510 + URR1A DNA MER1_type 1 221 -5 2 1356 1253 262 29 60 chr6 101140608 101140993 -48376044 + MTEb LTR MaLR 3 375 -4 2 1356 25 0 0 0 chr6 101141008 101141033 -48376004 + AT_rich Low_complexity Low_complexity 1 25 0 2 1356 274 272 11 100 chr6 101141572 101141662 -48375375 + ID4_ SINE ID 2 83 0 2 1356 203 309 30 69 chr6 101141858 101141959 -48375078 - MER5A DNA MER1_type -16 173 77 2 1356 332 276 40 24 chr6 101144250 101144376 -48372661 - B1F SINE Alu -19 130 3 2 1356 555 144 0 0 chr6 101145107 101145204 -48371833 + (TCTCCC)n Simple_repeat Simple_repeat 4 100 0 2 1356 225 345 48 0 chr6 101145363 101145447 -48371590 - B1F2 SINE Alu -61 88 1 2 1356 478 271 30 30 chr6 101145447 101145509 -48371528 - B4 SINE B4 -207 85 24 2 1356 339 342 16 22 chr6 101145611 101145765 -48371272 + MIRb SINE MIR 105 253 -9 2 1356 315 0 0 0 chr6 101146539 101146574 -48370463 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1356 396 147 0 0 chr6 101149085 101149160 -48367877 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1356 617 166 11 44 chr6 101150024 101150207 -48366830 + G-rich Low_complexity Low_complexity 3 179 0 2 1356 225 0 0 0 chr6 101150297 101150322 -48366715 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2 1356 298 319 42 48 chr6 101151009 101151177 -48365860 + L2 LINE L2 2838 3004 -415 2 1356 288 0 0 0 chr6 101151364 101151396 -48365641 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1356 524 286 121 65 chr6 101151399 101151631 -48365406 - B4A SINE B4 -7 285 41 2 1356 337 280 97 0 chr6 101152226 101152319 -48364718 + PB1D7 SINE Alu 14 115 -5 2 1356 328 317 91 85 chr6 101152440 101152616 -48364421 + B4 SINE B4 3 179 -113 2 1356 314 95 32 0 chr6 101152663 101152726 -48364311 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 2 1356 626 354 45 28 chr6 101152747 101153104 -48363933 - Charlie1b DNA MER1_type -160 363 1 2 1356 1288 162 293 9 chr6 101153757 101154081 -48362956 + MTD LTR MaLR 3 418 -1 2 1356 450 0 0 0 chr6 101154545 101154595 -48362442 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1356 819 302 20 51 chr6 101159240 101159536 -48357501 + B4 SINE B4 2 288 -4 2 1356 201 196 0 0 chr6 101159543 101159594 -48357443 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1356 207 0 0 0 chr6 101160265 101160288 -48356749 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1356 891 278 18 9 chr6 101161744 101161962 -48355075 - MTE2b LTR MaLR -159 220 1 2 1356 252 0 0 0 chr6 101164713 101164741 -48352296 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1356 695 257 124 18 chr6 101165936 101166162 -48350875 - MER2 DNA MER2_type -9 336 87 2 1356 513 0 0 0 chr6 101166164 101166221 -48350816 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1356 238 290 32 0 chr6 101166222 101166284 -48350753 - ID SINE ID -158 66 3 2 1356 382 335 39 53 chr6 101166338 101166622 -48350415 - B4 SINE B4 -11 281 2 2 1356 976 163 0 0 chr6 101168809 101168956 -48348081 + B1_Mur2 SINE Alu 3 149 0 2 1356 664 306 10 15 chr6 101169061 101169257 -48347780 - RMER30 DNA MER1_type 0 202 8 2 1356 424 283 0 0 chr6 101170169 101170261 -48346776 - ID_B1 SINE B4 -19 205 114 2 1356 4430 45 11 20 chr6 101171584 101172129 -48344908 + L1_Mus1 LINE L1 6028 6567 0 2 1356 189 0 0 0 chr6 101172165 101172186 -48344851 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2 1356 1067 279 14 18 chr6 101172204 101172488 -48344549 + B4 SINE B4 3 285 -7 2 1356 257 0 30 0 chr6 101172504 101172537 -48344500 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1356 237 302 143 20 chr6 101172800 101172898 -48344139 + MLT1A0 LTR MaLR 158 267 -98 2 1356 305 321 49 30 chr6 101173438 101173602 -48343435 - MIRb SINE MIR -16 252 86 2 1356 402 57 0 0 chr6 101173725 101173778 -48343259 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1356 324 0 0 0 chr6 101173780 101173816 -48343221 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1356 198 103 0 0 chr6 101175216 101175245 -48341792 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1356 206 324 25 59 chr6 101175716 101175834 -48341203 - MIRb SINE MIR -35 233 120 2 1356 279 0 0 0 chr6 101177909 101177940 -48339097 + (GGTTG)n Simple_repeat Simple_repeat 3 33 0 2 1356 507 33 0 0 chr6 101178001 101178062 -48338975 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1356 486 0 0 0 chr6 101178796 101178850 -48338187 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1356 203 288 26 164 chr6 101178897 101179092 -48337945 - L3 LINE CR1 -4260 229 62 2 1356 423 280 125 39 chr6 101179198 101179406 -48337631 + L1MB2 LINE L1 5869 6094 -77 2 1356 262 376 44 44 chr6 101179427 101179633 -48337404 + MLT1D LTR MaLR 175 380 -125 2 1356 209 291 22 44 chr6 101180011 101180101 -48336936 + MIRb SINE MIR 64 151 -117 2 1356 920 240 68 9 chr6 101180123 101180339 -48336698 + B4 SINE B4 2 230 -62 2 1356 793 176 49 0 chr6 101180339 101180481 -48336556 + B1_Mur1 SINE Alu 1 149 0 2 1356 450 94 0 0 chr6 101180508 101180572 -48336465 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1356 291 293 43 74 chr6 101180675 101180691 -48336346 - YREP_Mm Unknown Unknown -1485 327 254 2 1356 639 244 46 0 chr6 101180691 101180822 -48336215 + ID_B1 SINE B4 81 217 -7 2 1356 291 293 43 74 chr6 101180822 101180837 -48336200 - YREP_Mm Unknown Unknown -1485 253 171 2 1356 475 266 188 22 chr6 101181321 101181502 -48335535 - MER20 DNA MER1_type -7 212 2 2 1356 21 36 0 0 chr6 101181605 101181633 -48335404 + AT_rich Low_complexity Low_complexity 1 28 0 2 1356 274 252 42 134 chr6 101181850 101181992 -48335045 - MIR SINE MIR -132 130 2 2 1356 851 307 58 98 chr6 101182291 101182771 -48334266 + MLT1C LTR MaLR 1 461 -6 2 1356 1296 308 65 86 chr6 101182853 101183421 -48333616 + Tigger7 DNA MER2_type 45 600 -1891 2 1356 273 243 40 13 chr6 101183426 101183501 -48333536 + ID2 SINE ID 7 83 0 2 1356 266 169 15 0 chr6 101183553 101183618 -48333419 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1356 278 320 13 0 chr6 101183647 101183725 -48333312 + Tigger7 DNA MER2_type 2413 2491 0 2 1356 523 375 25 48 chr6 101185837 101186153 -48330884 + MLT1F1 LTR MaLR 261 569 0 3 1356 183 237 101 146 chr6 101186212 101186370 -48330667 + L2 LINE L2 103 253 -3166 3 1356 627 39 0 0 chr6 101186682 101186760 -48330277 + (GGA)n Simple_repeat Simple_repeat 3 80 0 3 1357 207 0 0 0 chr6 101188120 101188143 -48328894 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1357 226 365 49 87 chr6 101188280 101188463 -48328574 + MLT1F1 LTR MaLR 5 180 -368 3 1357 502 247 154 36 chr6 101188571 101188796 -48328241 + MLT1F1 LTR MaLR 308 578 -1 3 1357 277 243 100 0 chr6 101188919 101188989 -48328048 + MIR SINE MIR 161 237 -25 3 1357 183 80 0 0 chr6 101189003 101189028 -48328009 + (TTAG)n Simple_repeat Simple_repeat 1 25 0 3 1357 197 306 0 16 chr6 101189030 101189093 -48327944 - MIR SINE MIR -109 153 92 3 1357 239 311 16 70 chr6 101189767 101189895 -48327142 + ORR1E LTR MaLR 46 166 -193 3 1357 551 282 151 59 chr6 101191149 101191473 -48325564 + ORR1E LTR MaLR 1 354 -5 3 1357 408 88 0 0 chr6 101191728 101191785 -48325252 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1357 2303 165 39 15 chr6 101192206 101192617 -48324420 + MTC LTR MaLR 1 421 0 3 1357 915 226 180 6 chr6 101193096 101193412 -48323625 + MTEa LTR MaLR 4 374 -5 3 1357 459 130 0 0 chr6 101193884 101193953 -48323084 + Lx LINE L1 6452 6520 -134 3 1357 187 257 221 39 chr6 101194523 101194600 -48322437 + MIRb SINE MIR 109 199 -69 3 1357 2420 290 61 33 chr6 101194897 101195809 -48321228 + Lx9 LINE L1 6565 7502 -142 3 1357 286 285 99 19 chr6 101196680 101196841 -48320196 + L1MB4 LINE L1 5998 6171 -9 3 1357 291 169 0 0 chr6 101197739 101197810 -48319227 + T-rich Low_complexity Low_complexity 1 71 0 3 1357 184 253 89 51 chr6 101198365 101198444 -48318593 + L3 LINE CR1 3554 3635 -854 3 1357 242 329 65 61 chr6 101198598 101198828 -48318209 + L2b LINE L2 2934 3164 -211 3 1357 236 55 35 53 chr6 101198845 101198902 -48318135 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 3 1357 306 347 26 32 chr6 101199025 101199180 -48317857 + MER45C DNA Tip100 71 224 -729 3 1357 442 287 191 34 chr6 101199481 101199561 -48317476 + MER45C DNA Tip100 710 810 -143 3 1357 369 0 0 0 chr6 101199561 101199602 -48317435 + (CAGA)n Simple_repeat Simple_repeat 3 43 0 3 1357 442 287 191 34 chr6 101199602 101199730 -48317307 + MER45C DNA Tip100 811 951 -2 3 1357 1680 236 53 5 chr6 101200125 101200521 -48316516 - MTD LTR MaLR -4 415 1 3 1357 357 62 0 0 chr6 101204373 101204421 -48312616 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1357 738 294 60 23 chr6 101205920 101206136 -48310901 + B4A SINE B4 1 224 -68 3 1357 216 0 0 0 chr6 101206149 101206173 -48310864 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1357 230 323 15 0 chr6 101206341 101206406 -48310631 + ID4_ SINE ID 3 68 -15 3 1357 426 303 41 27 chr6 101206689 101206835 -48310202 + ID_B1 SINE B4 77 224 0 3 1357 201 250 0 38 chr6 101206835 101206914 -48310123 + A-rich Low_complexity Low_complexity 2 77 0 3 1357 475 224 14 0 chr6 101208398 101208541 -48308496 + (CA)n Simple_repeat Simple_repeat 2 146 0 3 1357 374 167 0 77 chr6 101208543 101208621 -48308416 + HAL1-3A_ME LINE L1 1975 2046 -812 3 1357 741 291 68 45 chr6 101209864 101210104 -48306933 - MER2 DNA MER2_type -29 316 71 3 1357 261 83 0 0 chr6 101210104 101210140 -48306897 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1357 741 291 68 45 chr6 101210140 101210208 -48306829 - MER2 DNA MER2_type -275 70 2 3 1357 262 250 43 14 chr6 101210333 101210402 -48306635 + ID4 SINE ID 8 78 -5 3 1357 618 113 0 0 chr6 101210405 101210502 -48306535 + (CCA)n Simple_repeat Simple_repeat 3 99 0 3 1357 320 275 11 0 chr6 101211088 101211179 -48305858 + CT-rich Low_complexity Low_complexity 1 92 0 3 1357 339 25 0 0 chr6 101211187 101211227 -48305810 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1357 480 319 116 37 chr6 101211232 101211473 -48305564 - B4A SINE B4 -23 269 10 3 1357 515 217 7 0 chr6 101212272 101212424 -48304613 + (CA)n Simple_repeat Simple_repeat 2 154 0 3 1357 1163 146 52 78 chr6 101213197 101213427 -48303610 - URR1B DNA MER1_type -1 224 1 3 1357 195 42 0 0 chr6 101215122 101215146 -48301891 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 3 1357 842 175 0 7 chr6 101215239 101215383 -48301654 - URR1B DNA MER1_type -2 223 81 3 1357 207 139 0 0 chr6 101215747 101215783 -48301254 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 3 1357 939 280 5 0 chr6 101215799 101216017 -48301020 - ID_B1 SINE B4 -3 221 3 3 1357 239 300 0 16 chr6 101216026 101216087 -48300950 - MLT1A1 LTR MaLR -278 130 71 3 1357 22 35 0 0 chr6 101216283 101216312 -48300725 + AT_rich Low_complexity Low_complexity 1 29 0 3 1357 736 277 102 10 chr6 101216481 101216678 -48300359 + ID_B1 SINE B4 10 224 0 3 1357 687 136 0 0 chr6 101216698 101216845 -48300192 + (GA)n Simple_repeat Simple_repeat 2 148 0 3 1357 268 114 0 83 chr6 101217589 101217637 -48299400 + L4 LINE RTE 1981 2024 -5 3 1357 261 91 14 43 chr6 101219691 101219760 -48297277 + (CAAAAA)n Simple_repeat Simple_repeat 2 68 0 3 1357 827 227 68 68 chr6 101220223 101220502 -48296535 - B4 SINE B4 -12 280 2 3 1357 503 257 92 46 chr6 101223143 101223339 -48293698 + B4 SINE B4 87 291 -1 3 1357 488 31 0 30 chr6 101223917 101223984 -48293053 + (TTA)n Simple_repeat Simple_repeat 1 65 0 3 1357 791 232 80 10 chr6 101223995 101224195 -48292842 - B3 SINE B2 -2 214 1 3 1357 216 67 0 0 chr6 101224293 101224323 -48292714 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1357 237 178 0 0 chr6 101224323 101224368 -48292669 + GA-rich Low_complexity Low_complexity 2 46 0 3 1357 228 182 0 0 chr6 101224772 101224816 -48292221 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1357 432 0 0 0 chr6 101224817 101224865 -48292172 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 3 1357 251 344 55 30 chr6 101225363 101225570 -48291467 + MIRb SINE MIR 43 254 -14 3 1357 360 0 0 0 chr6 101226121 101226161 -48290876 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1357 1009 297 53 68 chr6 101226263 101226812 -48290225 + L1MB3 LINE L1 5579 6119 -64 3 1357 540 278 31 36 chr6 101226812 101227006 -48290031 + B3A SINE B2 1 193 -5 3 1357 1009 297 53 68 chr6 101227006 101227060 -48289977 + L1MB3 LINE L1 6120 6173 -10 3 1357 492 301 55 0 chr6 101227142 101227332 -48289705 - MLT1A0 LTR MaLR -53 321 120 3 1357 734 141 7 0 chr6 101227823 101227965 -48289072 + (TC)n Simple_repeat Simple_repeat 1 143 0 3 1357 488 271 45 45 chr6 101229333 101229534 -48287503 + MER58B DNA MER1_type 125 325 -16 3 1357 225 94 0 0 chr6 101229973 101230005 -48287032 + (TGG)n Simple_repeat Simple_repeat 1 32 0 3 1357 212 0 36 0 chr6 101230554 101230582 -48286455 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1357 491 304 59 80 chr6 101232062 101232348 -48284689 + B4 SINE B4 3 282 -10 3 1357 225 65 0 0 chr6 101232388 101232419 -48284618 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1357 342 0 0 0 chr6 101232419 101232456 -48284581 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1357 344 312 99 27 chr6 101233278 101233499 -48283538 + MIRb SINE MIR 17 253 -15 3 1357 435 234 0 0 chr6 101235236 101235330 -48281707 + ID_B1 SINE B4 105 198 -26 3 1357 235 311 0 0 chr6 101236533 101236607 -48280430 + A-rich Low_complexity Low_complexity 1 74 0 3 1357 556 272 26 70 chr6 101236716 101236945 -48280092 - MER2 DNA MER2_type -48 297 79 3 1357 209 370 28 21 chr6 101237519 101237660 -48279377 + MIRb SINE MIR 99 240 -28 3 1357 4068 85 24 0 chr6 101238428 101238981 -48278056 - L1_Mus3 LINE L1 -2 6636 6071 3 1357 527 306 26 48 chr6 101239559 101239786 -48277251 - MER102b DNA MER1_type -108 233 12 3 1357 528 282 34 169 chr6 101240126 101240535 -48276502 + ORR1E LTR MaLR 4 357 -2 3 1357 378 258 113 32 chr6 101241870 101241994 -48275043 - B1F1 SINE Alu -3 146 13 3 1357 1018 92 67 6 chr6 101242496 101242660 -48274377 + B2_Mm2 SINE B2 2 175 -20 3 1357 254 241 12 25 chr6 101242664 101242745 -48274292 + L1MA7 LINE L1 6201 6280 -11 3 1357 195 42 0 0 chr6 101244177 101244201 -48272836 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1357 234 0 0 0 chr6 101245944 101245970 -48271067 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1357 252 77 0 0 chr6 101246112 101246151 -48270886 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1357 243 299 45 11 chr6 101247110 101247198 -48269839 + MLT1H LTR MaLR 69 159 -390 3 1357 270 0 0 0 chr6 101247214 101247244 -48269793 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1357 586 292 18 66 chr6 101247532 101247759 -48269278 - B4A SINE B4 0 292 77 3 1357 2380 69 65 15 chr6 101247881 101248206 -48268831 + IAPLTR4 LTR ERVK 1 341 -4 3 1357 199 0 31 31 chr6 101248206 101248238 -48268799 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 3 1357 423 316 92 38 chr6 101248289 101248605 -48268432 + Kanga2_a DNA Tc2 298 630 -258 3 1357 1119 48 0 0 chr6 101248848 101248994 -48268043 + B2_Mm2 SINE B2 1 146 -49 3 1357 314 288 68 0 chr6 101249481 101249613 -48267424 - MIR SINE MIR -4 258 118 3 1357 208 147 0 0 chr6 101249726 101249760 -48267277 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1357 271 135 19 37 chr6 101250119 101250173 -48266864 - B1F SINE Alu -93 56 4 3 1357 253 280 70 31 chr6 101250778 101250907 -48266130 - L1MA9 LINE L1 0 6312 6179 3 1357 213 154 0 0 chr6 101251384 101251423 -48265614 + (CAG)n Simple_repeat Simple_repeat 1 39 0 3 1357 4726 49 0 0 chr6 101251464 101252035 -48265002 - L1Md_F2 LINE L1 -2 6580 6010 3 1357 378 0 0 0 chr6 101252989 101253031 -48264006 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1357 670 272 90 75 chr6 101254060 101254338 -48262699 - Lx8 LINE L1 -109 7364 7083 4 1357 1202 238 4 4 chr6 101254462 101254723 -48262314 + RMER1B Other Other 2 262 -804 4 1357 2310 200 32 17 chr6 101254719 101255186 -48261851 + RMER1A Other Other 556 1029 -1 4 1357 312 261 23 0 chr6 101255931 101256019 -48261018 + B4A SINE B4 3 92 -200 4 1357 275 72 0 23 chr6 101256077 101256120 -48260917 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 4 1357 249 33 0 0 chr6 101256452 101256482 -48260555 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1357 616 278 80 84 chr6 101256488 101256751 -48260286 - B4A SINE B4 -18 274 13 4 1357 546 29 0 0 chr6 101256756 101256824 -48260213 + (CCCCAG)n Simple_repeat Simple_repeat 6 73 0 4 1357 765 228 5 36 chr6 101256942 101257138 -48259899 - MER121 Unknown Unknown -83 329 140 4 1357 379 269 130 34 chr6 101258848 101258994 -48258043 + RMER30 DNA MER1_type 4 163 -39 4 1357 570 236 217 6 chr6 101259384 101259559 -48257478 - B3 SINE B2 -4 212 1 4 1357 197 294 0 14 chr6 101259674 101259743 -48257294 + MER5A DNA MER1_type 2 69 -120 4 1357 233 208 14 0 chr6 101260247 101260319 -48256718 + GA-rich Low_complexity Low_complexity 1 73 0 4 1357 594 151 0 0 chr6 101261163 101261269 -48255768 + CT-rich Low_complexity Low_complexity 3 108 0 4 1357 222 362 37 18 chr6 101261758 101261943 -48255094 + MIRb SINE MIR 2 188 -74 4 1357 294 65 22 0 chr6 101262014 101262060 -48254977 + Lx2 LINE L1 6946 6992 -5 4 1357 294 29 0 0 chr6 101262060 101262095 -48254942 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1357 387 0 0 0 chr6 101263076 101263119 -48253918 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1357 360 243 93 37 chr6 101263251 101263358 -48253679 - B1_Mur2 SINE Alu -7 142 30 4 1357 266 246 0 0 chr6 101263370 101263427 -48253610 - PB1D10 SINE Alu -8 109 53 4 1357 200 241 13 0 chr6 101264439 101264518 -48252519 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1357 205 273 0 0 chr6 101264932 101264976 -48252061 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1357 269 131 16 0 chr6 101264987 101265048 -48251989 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1357 248 319 10 31 chr6 101265592 101265689 -48251348 + MLT1A1 LTR MaLR 296 390 -18 4 1357 198 0 0 0 chr6 101265714 101265736 -48251301 + (CAA)n Simple_repeat Simple_repeat 2 23 0 4 1357 195 69 0 0 chr6 101266046 101266075 -48250962 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1357 233 140 18 0 chr6 101266476 101266533 -48250504 + A-rich Low_complexity Low_complexity 3 60 0 4 1357 312 137 0 0 chr6 101266729 101266780 -48250257 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1357 745 302 37 11 chr6 101266794 101267065 -48249972 + B4 SINE B4 3 280 -12 4 1357 739 287 157 63 chr6 101267690 101268232 -48248805 - MER44D DNA MER2_type -112 593 1 4 1357 22 0 0 0 chr6 101269291 101269313 -48247724 + AT_rich Low_complexity Low_complexity 1 22 0 4 1357 524 312 69 29 chr6 101269696 101269970 -48247067 + ORR1E LTR MaLR 1 285 -74 4 1357 1113 42 35 14 chr6 101269971 101270115 -48246922 + B1_Mus2 SINE Alu 1 147 0 4 1357 472 25 24 47 chr6 101270125 101270210 -48246827 + (CAAAA)n Simple_repeat Simple_repeat 3 85 0 4 1357 311 217 0 14 chr6 101270212 101270282 -48246755 + ORR1E LTR MaLR 294 362 -17 4 1357 850 103 14 0 chr6 101271256 101271401 -48245636 + (TA)n Simple_repeat Simple_repeat 2 148 0 4 1357 874 257 19 9 chr6 101271878 101272090 -48244947 + B4A SINE B4 4 217 -75 4 1357 215 31 31 0 chr6 101272090 101272122 -48244915 + (CAA)n Simple_repeat Simple_repeat 2 34 0 4 1357 399 41 0 0 chr6 101272289 101272338 -48244699 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1357 509 263 31 37 chr6 101272622 101272784 -48244253 - RSINE1 SINE B4 -2 163 3 4 1357 605 133 51 34 chr6 101274137 101274254 -48242783 + RMER16 LTR ERVK 332 450 -83 4 1357 1058 123 0 6 chr6 101274268 101274334 -48242703 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 4 1357 1347 72 0 0 chr6 101274334 101274514 -48242523 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1357 1058 123 0 6 chr6 101274514 101274619 -48242418 + (GGAA)n Simple_repeat Simple_repeat 1 105 0 4 1357 767 274 14 14 chr6 101275313 101275528 -48241509 - B3 SINE B2 0 216 2 4 1357 495 0 0 0 chr6 101276956 101277011 -48240026 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1357 197 271 81 0 chr6 101278371 101278458 -48238579 + MIRm SINE MIR 76 173 -95 4 1357 228 67 0 0 chr6 101279180 101279210 -48237827 + (CAA)n Simple_repeat Simple_repeat 3 32 0 4 1357 3373 38 0 10 chr6 101280734 101281134 -48235903 + MTA_Mm LTR MaLR 1 396 0 4 1357 263 286 132 0 chr6 101281203 101281221 -48235816 + ID_B1 SINE B4 64 93 -131 4 1357 280 274 140 47 chr6 101281221 101281328 -48235709 + PB1D10 SINE Alu 1 117 0 4 1357 180 125 0 0 chr6 101281345 101281377 -48235660 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 4 1357 266 350 93 41 chr6 101282043 101282237 -48234800 + MER58A DNA MER1_type 21 224 0 4 1357 180 0 0 0 chr6 101282611 101282631 -48234406 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1357 2431 43 0 19 chr6 101282786 101283095 -48233942 + L1Md_F2 LINE L1 6279 6581 -1 4 1357 192 152 0 0 chr6 101283095 101283128 -48233909 + GA-rich Low_complexity Low_complexity 1 33 0 4 1357 277 309 139 38 chr6 101283579 101283737 -48233300 + LTR48 LTR ERV1 110 283 -361 4 1357 534 318 47 58 chr6 101283746 101284023 -48233014 + LTR48 LTR ERV1 504 777 -10 4 1357 499 298 67 39 chr6 101284237 101284514 -48232523 + B4A SINE B4 8 275 -17 4 1357 372 22 0 0 chr6 101284522 101284567 -48232470 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1357 441 0 0 0 chr6 101284567 101284615 -48232422 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1357 356 209 105 7 chr6 101284682 101284853 -48232184 + L1_Rod LINE L1 5080 5290 -853 4 1357 216 158 0 0 chr6 101284875 101284913 -48232124 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1357 465 269 7 14 chr6 101284926 101285069 -48231968 + L1_Rod LINE L1 5319 5460 -843 4 1357 880 181 11 43 chr6 101286581 101286764 -48230273 + RLTR20C LTR ERVK 1 188 -339 4 1357 582 113 0 0 chr6 101287566 101287672 -48229365 + (TCTCTG)n Simple_repeat Simple_repeat 2 107 0 4 1357 1042 274 17 51 chr6 101289476 101289768 -48227269 + B4A SINE B4 6 287 -5 4 1357 300 154 0 0 chr6 101289826 101289878 -48227159 + (ATG)n Simple_repeat Simple_repeat 1 52 0 4 1357 382 322 65 73 chr6 101290910 101291155 -48225882 + MER112 DNA MER1_type 7 249 -12 4 1357 491 318 161 5 chr6 101291320 101291538 -48225499 + B4A SINE B4 5 256 -36 4 1357 642 277 21 26 chr6 101291673 101291866 -48225171 - B3A SINE B2 0 198 7 4 1357 231 346 138 6 chr6 101292426 101292586 -48224451 + MER113 DNA MER1_type 219 399 -122 4 1357 867 47 0 0 chr6 101292586 101292692 -48224345 + B2_Mm2 SINE B2 3 108 -87 4 1357 220 222 12 24 chr6 101293088 101293171 -48223866 + CT-rich Low_complexity Low_complexity 5 86 0 4 1357 297 75 0 0 chr6 101293402 101293442 -48223595 + (CAAG)n Simple_repeat Simple_repeat 4 43 0 4 1357 408 219 0 0 chr6 101294001 101294074 -48222963 - ID4_ SINE ID -8 75 3 4 1357 441 313 7 29 chr6 101294965 101295103 -48221934 - B4A SINE B4 -6 286 152 4 1357 7345 46 18 2 chr6 101296491 101297382 -48219655 - L1Md_F2 LINE L1 0 6582 5678 4 1357 653 282 0 45 chr6 101297496 101297652 -48219385 + RSINE1 SINE B4 15 163 -2 4 1357 485 294 44 32 chr6 101298025 101298183 -48218854 - B4A SINE B4 -132 160 1 4 1357 396 0 0 0 chr6 101298732 101298776 -48218261 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1357 270 393 0 25 chr6 101298848 101298968 -48218069 + PB1D10 SINE Alu 1 117 0 4 1357 327 25 0 0 chr6 101299115 101299155 -48217882 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1357 610 228 85 10 chr6 101299221 101299420 -48217617 + Lx7 LINE L1 7465 7678 -18 4 1357 995 243 114 18 chr6 101299603 101299884 -48217153 + MTEa LTR MaLR 71 378 -1 4 1357 580 233 24 65 chr6 101300092 101300262 -48216775 + RSINE1 SINE B4 3 165 0 4 1357 180 135 0 0 chr6 101301017 101301054 -48215983 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1357 309 132 65 13 chr6 101301081 101301158 -48215879 + GA-rich Low_complexity Low_complexity 3 83 0 4 1357 207 0 0 0 chr6 101301672 101301695 -48215342 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1357 189 0 0 0 chr6 101302521 101302542 -48214495 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1357 427 345 0 22 chr6 101304891 101305072 -48211965 + CT-rich Low_complexity Low_complexity 4 180 0 4 1357 275 173 24 24 chr6 101305886 101305969 -48211068 + GA-rich Low_complexity Low_complexity 2 84 0 4 1357 354 143 0 0 chr6 101306037 101306100 -48210937 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 4 1357 422 156 0 20 chr6 101306136 101306234 -48210803 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 4 1357 228 250 160 59 chr6 101306637 101306756 -48210281 - MIRb SINE MIR -64 204 74 4 1357 285 213 32 16 chr6 101307171 101307233 -48209804 + tRNA-Thr-ACY tRNA tRNA 4 66 -11 4 1357 357 281 11 11 chr6 101307178 101307268 -48209769 + B4 SINE B4 18 107 -185 4 1357 510 148 0 0 chr6 101307268 101307369 -48209668 + (CA)n Simple_repeat Simple_repeat 2 102 0 4 1357 351 132 0 19 chr6 101307371 101307425 -48209612 + HAL1-3A_ME LINE L1 1975 2027 -831 4 1357 465 174 0 0 chr6 101307426 101307524 -48209513 + (CA)n Simple_repeat Simple_repeat 2 99 0 4 1357 790 222 13 7 chr6 101307524 101307678 -48209359 + B4 SINE B4 73 227 -65 4 1357 410 227 0 33 chr6 101307679 101307770 -48209267 + U6 snRNA snRNA 2 89 -18 4 1357 802 147 14 27 chr6 101307872 101308019 -48209018 + B1_Mur3 SINE Alu 5 149 0 4 1357 342 171 0 0 chr6 101308219 101308289 -48208748 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1357 659 152 15 0 chr6 101308771 101308883 -48208154 - B1_Mus2 SINE Alu -26 122 5 4 1357 579 92 0 0 chr6 101309116 101309203 -48207834 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 1357 412 280 43 0 chr6 101309212 101309305 -48207732 - RSINE1 SINE B4 -64 101 5 5 1357 708 277 83 46 chr6 101309320 101309536 -48207501 - B4A SINE B4 -68 224 1 5 1357 357 24 0 0 chr6 101309644 101309686 -48207351 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1357 306 0 0 0 chr6 101310848 101310882 -48206155 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1357 380 302 9 0 chr6 101310905 101311011 -48206026 + PB1D10 SINE Alu 3 109 -8 5 1357 229 335 107 22 chr6 101311177 101311439 -48205598 + L2c LINE L2 3074 3387 0 5 1357 225 0 0 0 chr6 101311997 101312022 -48205015 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1357 342 0 0 0 chr6 101312671 101312709 -48204328 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1357 224 271 0 30 chr6 101313379 101313478 -48203559 + GA-rich Low_complexity Low_complexity 2 97 0 5 1357 215 270 26 26 chr6 101314745 101314821 -48202216 - MIRb SINE MIR -165 103 28 5 1357 848 289 111 37 chr6 101318245 101318515 -48198522 + B4 SINE B4 1 290 -2 5 169 732 265 23 102 chr6 101318619 101318685 -48198352 + MLT1A0 LTR MaLR 126 188 -177 5 1358 408 55 0 0 chr6 101318685 101318740 -48198297 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1358 732 265 23 102 chr6 101318740 101318929 -48198108 + MLT1A0 LTR MaLR 189 361 -4 5 1358 266 248 66 16 chr6 101318954 101319034 -48198003 - PB1D10 SINE Alu -2 125 34 5 1358 475 224 164 27 chr6 101320305 101320530 -48196507 - Lx9 LINE L1 0 7644 7389 5 1358 296 192 10 48 chr6 101320644 101320748 -48196289 + T-rich Low_complexity Low_complexity 3 102 0 5 1358 734 244 114 52 chr6 101320798 101321070 -48195967 - B4A SINE B4 -3 289 1 5 1358 2497 51 38 0 chr6 101321830 101322145 -48194892 + L1_Mus1 LINE L1 6241 6567 0 5 1358 189 250 0 0 chr6 101322748 101322792 -48194245 - L2 LINE L2 -339 3080 3037 5 1358 436 360 25 36 chr6 101325156 101325352 -48191685 + MER20 DNA MER1_type 1 194 -25 5 1358 712 160 53 53 chr6 101325615 101325767 -48191270 - URR1A DNA MER1_type -17 209 58 5 1358 301 251 166 79 chr6 101325617 101325846 -48191191 + CYRA11_Mm Unknown Y-chromosome 190 438 -179 5 1358 500 129 11 76 chr6 101325926 101326111 -48190926 + G-rich Low_complexity Low_complexity 3 175 0 5 1358 235 200 29 71 chr6 101326523 101326593 -48190444 - MIRb SINE MIR -147 121 55 5 1358 281 140 18 0 chr6 101327094 101327151 -48189886 + GA-rich Low_complexity Low_complexity 1 58 0 5 1358 23 68 0 0 chr6 101327885 101327929 -48189108 + GC_rich Low_complexity Low_complexity 1 44 0 5 1358 301 264 95 27 chr6 101328702 101328776 -48188261 + HAL1 LINE L1 875 953 -1554 5 1358 279 93 0 0 chr6 101328994 101329037 -48188000 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 5 1358 454 277 83 47 chr6 101330522 101330715 -48186322 - MER20 DNA MER1_type -19 200 1 5 1358 307 211 158 0 chr6 101331077 101331153 -48185884 - 5S rRNA rRNA -31 90 3 5 1358 252 86 0 0 chr6 101331497 101331532 -48185505 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 5 1358 783 260 111 90 chr6 101332102 101332381 -48184656 + B4A SINE B4 8 292 0 5 1358 586 143 30 8 chr6 101332408 101332542 -48184495 + (CA)n Simple_repeat Simple_repeat 2 138 0 5 1358 229 304 147 73 chr6 101332709 101332954 -48184083 - LTR81B LTR ERV1? -1064 329 67 5 1358 274 255 43 43 chr6 101333594 101333709 -48183328 - Lx8 LINE L1 -1573 5900 5786 5 1358 396 0 0 0 chr6 101333733 101333777 -48183260 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1358 183 80 0 0 chr6 101333868 101333893 -48183144 + (TATG)n Simple_repeat Simple_repeat 4 28 0 5 1358 441 0 0 0 chr6 101333934 101333983 -48183054 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 5 1358 645 246 133 20 chr6 101334088 101334283 -48182754 - MER58A DNA MER1_type -1 223 7 5 1358 219 36 0 0 chr6 101334319 101334347 -48182690 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1358 199 323 46 0 chr6 101335510 101335575 -48181462 + L2b LINE L2 3290 3357 -18 5 1358 426 255 45 45 chr6 101336530 101336641 -48180396 + PB1D7 SINE Alu 3 113 -7 5 1358 283 299 104 52 chr6 101336641 101336664 -48180373 + ID_B1 SINE B4 84 224 0 5 1358 483 353 48 19 chr6 101337239 101337447 -48179590 - MER20 DNA MER1_type 0 219 6 5 1358 468 0 0 0 chr6 101337536 101337588 -48179449 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1358 836 279 72 26 chr6 101337607 101337872 -48179165 - B4 SINE B4 -14 278 2 5 1358 1053 245 102 47 chr6 101339184 101339527 -48177510 + MTEa LTR MaLR 4 365 -14 5 1358 1916 118 100 0 chr6 101339962 101340283 -48176754 + Lx LINE L1 6300 6652 -2 5 1358 602 202 9 9 chr6 101340434 101340544 -48176493 - ID_B1 SINE B4 -16 208 99 5 1358 442 286 89 63 chr6 101341305 101341607 -48175430 + MER33 DNA MER1_type 9 318 -6 5 1358 564 89 0 0 chr6 101341676 101341755 -48175282 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 5 1358 991 326 22 6 chr6 101343353 101343677 -48173360 + MER58B DNA MER1_type 1 329 -12 5 1358 308 339 102 41 chr6 101343787 101343984 -48173053 + MIR SINE MIR 20 228 -34 5 1358 25 31 0 0 chr6 101344049 101344081 -48172956 + AT_rich Low_complexity Low_complexity 1 32 0 5 1358 505 288 70 45 chr6 101344931 101345131 -48171906 + B4 SINE B4 6 210 -82 5 1358 242 206 15 0 chr6 101345178 101345246 -48171791 + (CATA)n Simple_repeat Simple_repeat 4 72 0 5 1358 740 159 22 15 chr6 101345324 101345458 -48171579 + B1_Mur4 SINE Alu 14 148 -2 5 1358 216 278 37 0 chr6 101345518 101345572 -48171465 + L2c LINE L2 3330 3385 -2 5 1358 1845 222 16 19 chr6 101347543 101347929 -48169108 + MTE2b LTR MaLR 1 370 0 5 1358 316 339 7 51 chr6 101347960 101348097 -48168940 + L2a LINE L2 2682 2812 -607 5 1358 186 344 36 42 chr6 101348288 101348455 -48168582 + L2a LINE L2 3001 3166 -260 5 1358 2600 77 3 0 chr6 101348845 101349171 -48167866 - ORR1A2 LTR MaLR 0 327 1 5 1358 789 276 33 16 chr6 101349691 101349934 -48167103 - Lx8 LINE L1 -199 7274 7028 5 1358 225 33 0 0 chr6 101350170 101350200 -48166837 - B3 SINE B2 -186 30 1 5 1358 300 53 0 0 chr6 101351038 101351076 -48165961 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1358 876 238 40 18 chr6 101352926 101353200 -48163837 + Lx5 LINE L1 882 1161 -5925 5 1358 6469 56 9 1 chr6 101353200 101354068 -48162969 + L1_Mus1 LINE L1 5709 6567 0 5 1358 21912 156 38 53 chr6 101354109 101354962 -48162075 + Lx5 LINE L1 1150 2070 -3807 5 1358 194 91 30 0 chr6 101354962 101354995 -48162042 + (CCA)n Simple_repeat Simple_repeat 1 34 0 5 1358 21912 153 39 56 chr6 101354995 101356029 -48161008 + Lx5 LINE L1 2071 3083 -2794 5 1358 1347 72 0 0 chr6 101356029 101356209 -48160828 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1358 21912 171 44 47 chr6 101356209 101360241 -48156796 + Lx5 LINE L1 3084 7034 -16 5 1358 336 102 0 0 chr6 101360241 101360290 -48156747 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 5 1358 202 286 14 54 chr6 101360859 101360933 -48156104 - L2 LINE L2 -665 2754 2684 5 1358 216 67 0 0 chr6 101362583 101362613 -48154424 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1358 439 315 97 31 chr6 101362687 101362946 -48154091 + L1M2 LINE L1 5027 5302 -841 5 1358 541 273 82 17 chr6 101362964 101363195 -48153842 + L1_Rod LINE L1 5285 5530 -317 5 1358 834 201 0 0 chr6 101363211 101363350 -48153687 + B1_Mur3 SINE Alu 1 139 -10 5 1358 194 91 30 0 chr6 101363363 101363396 -48153641 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1358 440 236 145 8 chr6 101363484 101363513 -48153524 - MTD LTR MaLR -258 163 122 5 1358 198 0 0 0 chr6 101363513 101363535 -48153502 + (CAAT)n Simple_repeat Simple_repeat 3 24 0 5 1358 454 193 59 11 chr6 101363535 101363629 -48153408 - MTD LTR MaLR -300 121 23 5 1358 2785 143 13 58 chr6 101364099 101364648 -48152389 - RLTR28 LTR ERVL 0 524 1 5 1358 292 284 18 0 chr6 101365250 101365359 -48151678 + L1MB3 LINE L1 5951 6061 -122 5 1358 356 311 55 157 chr6 101365380 101366041 -48150996 - MER33 DNA MER1_type -1 323 51 5 1358 1126 61 0 26 chr6 101366043 101366195 -48150842 + B1_Mus1 SINE Alu 1 148 0 5 1358 387 169 0 0 chr6 101366195 101366266 -48150771 + A-rich Low_complexity Low_complexity 1 71 0 5 1358 1134 264 94 35 chr6 101366284 101366834 -48150203 - Charlie5 DNA MER1_type -583 2041 1459 5 1358 460 318 46 89 chr6 101366834 101367138 -48149899 + B4A SINE B4 2 292 0 5 1358 445 257 103 0 chr6 101367315 101367451 -48149586 + RSINE1 SINE B4 2 151 -14 5 1358 955 275 140 22 chr6 101367527 101368077 -48148960 - Charlie5 DNA MER1_type -1227 1397 783 5 1358 1645 173 4 7 chr6 101369370 101369644 -48147393 - MTC LTR MaLR 0 421 149 5 1358 556 288 106 4 chr6 101369668 101369905 -48147132 + MER2 DNA MER2_type 60 320 -25 5 1358 1112 279 48 11 chr6 101370180 101370448 -48146589 + B4A SINE B4 11 288 -4 5 1358 665 336 79 27 chr6 101370528 101370935 -48146102 - MER63B DNA AcHobo -8 428 1 5 1358 373 326 89 0 chr6 101373488 101373623 -48143414 + MER58A DNA MER1_type 41 187 -37 5 1358 419 302 10 104 chr6 101374852 101375044 -48141993 - MIRb SINE MIR -58 210 37 5 1358 589 318 42 27 chr6 101375123 101375459 -48141578 - MER58B DNA MER1_type 0 341 1 5 1358 187 298 0 0 chr6 101375750 101375807 -48141230 + MIRc SINE MIR 198 254 -14 5 1358 190 350 66 8 chr6 101377147 101377268 -48139769 - MIRc SINE MIR -37 231 104 5 1358 450 0 0 0 chr6 101380936 101380986 -48136051 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1358 445 235 53 98 chr6 101381011 101381143 -48135894 - B4 SINE B4 -41 251 126 5 1358 359 203 43 0 chr6 101381149 101381218 -48135819 + RMER12 LTR ERVK 1147 1218 -104 5 1358 315 0 0 0 chr6 101381328 101381363 -48135674 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1358 728 316 67 22 chr6 101381410 101381439 -48135598 - B4A SINE B4 -59 233 206 5 1358 1799 142 18 93 chr6 101381439 101381882 -48135155 + RMER17C LTR ERVK 1 410 0 5 1358 728 316 67 22 chr6 101381882 101382075 -48134962 - B4A SINE B4 -87 205 1 5 1358 185 178 0 22 chr6 101382165 101382211 -48134826 + G-rich Low_complexity Low_complexity 5 49 0 6 1358 216 86 0 0 chr6 101383662 101383697 -48133340 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1358 13238 165 33 18 chr6 101384372 101384768 -48132269 - L1_Mur3 LINE L1 -841 5039 4626 6 1358 201 121 0 0 chr6 101384768 101384801 -48132236 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1358 13238 165 33 18 chr6 101384801 101386163 -48130874 - L1_Mur3 LINE L1 -1255 4625 3267 6 1358 924 182 193 0 chr6 101386163 101386344 -48130693 - B3 SINE B2 0 216 1 6 1358 13238 165 33 18 chr6 101386344 101387374 -48129663 - L1_Mur3 LINE L1 -2614 3266 2210 6 1358 697 184 57 0 chr6 101387372 101387530 -48129507 - L1_Mur3 LINE L1 -3906 1974 1808 6 1358 3587 204 64 27 chr6 101387534 101388357 -48128680 - L1_Mur3 LINE L1 -6829 899 46 6 1358 653 174 0 9 chr6 101388372 101388488 -48128549 + MTC LTR MaLR 6 120 -301 6 1358 41350 15 0 6 chr6 101388492 101394676 -48122361 - L1Md_A LINE L1 0 6582 442 6 1358 624 206 18 19 chr6 101394676 101394814 -48122223 + MTC LTR MaLR 87 213 -194 6 1358 5831 213 56 24 chr6 101394816 101396081 -48120956 + Lx5 LINE L1 5710 7015 -35 6 1358 308 83 21 0 chr6 101396081 101396129 -48120908 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1358 1125 144 40 5 chr6 101396173 101396375 -48120662 + MTC LTR MaLR 196 404 -17 6 1358 376 375 100 7 chr6 101396421 101396711 -48120326 - LTR16E1 LTR ERVL -57 481 165 6 1358 262 274 83 0 chr6 101396963 101397047 -48119990 - MamRep1879 DNA hAT? -65 151 61 6 1358 416 326 161 13 chr6 101397570 101397800 -48119237 - MLT2B3 LTR ERVL -66 488 225 6 1358 227 323 239 25 chr6 101397908 101398146 -48118891 - MLT1F1 LTR MaLR -83 512 224 6 1358 240 344 91 8 chr6 101398224 101398356 -48118681 - MLT1F1 LTR MaLR -426 143 1 6 1358 354 230 158 9 chr6 101398446 101398560 -48118477 + MER3 DNA MER1_type 6 136 -73 6 1358 314 304 33 110 chr6 101398556 101398855 -48118182 - ORR1E LTR MaLR -39 320 45 6 1358 238 292 27 45 chr6 101399600 101399711 -48117326 - MIRb SINE MIR -2 266 158 6 1358 209 278 85 57 chr6 101399732 101399873 -48117164 - MIRb SINE MIR -96 172 28 6 1358 420 372 40 5 chr6 101400535 101400787 -48116250 + MIRb SINE MIR 1 268 0 6 1358 202 347 0 0 chr6 101400833 101400905 -48116132 + MIR SINE MIR 78 149 -113 6 1358 440 279 13 33 chr6 101400921 101400964 -48116073 + L1MB3 LINE L1 5449 5488 -680 6 1358 276 100 0 0 chr6 101400964 101401004 -48116033 + (CAA)n Simple_repeat Simple_repeat 2 41 0 6 1358 440 279 13 33 chr6 101401004 101401112 -48115925 + L1MB3 LINE L1 5489 5597 -571 6 1358 649 278 23 77 chr6 101401119 101401380 -48115657 + B4A SINE B4 1 247 -45 6 1358 1103 274 50 83 chr6 101401457 101402002 -48115035 + L1MB3 LINE L1 5614 6140 -43 6 1358 24 67 0 0 chr6 101402511 101402556 -48114481 + AT_rich Low_complexity Low_complexity 1 45 0 6 1358 2321 72 119 14 chr6 101402741 101403094 -48113943 + RLTR10 LTR ERVK 1 390 0 6 1358 457 17 0 0 chr6 101403094 101403153 -48113884 - RLTR10 LTR ERVK -331 59 1 6 1358 8561 16 1 0 chr6 101403155 101404096 -48112941 - RLTR10-int LTR ERVK -3 1984 1043 6 1358 766 12 0 0 chr6 101404089 101404174 -48112863 - RLTR10-int LTR ERVK -1601 386 302 6 1358 2334 78 119 11 chr6 101404174 101404526 -48112511 - RLTR10 LTR ERVK 0 390 1 6 1358 226 254 18 48 chr6 101404735 101404841 -48112196 + MIR SINE MIR 5 101 -167 6 1358 871 161 28 12 chr6 101404989 101405176 -48111861 - URR1B DNA MER1_type -14 211 1 6 1358 2057 173 13 21 chr6 101406205 101406594 -48110443 + ORR1B1 LTR MaLR 1 386 -8 6 1358 417 39 0 0 chr6 101406818 101406869 -48110168 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1358 333 305 78 21 chr6 101406985 101407176 -48109861 - L1MD3 LINE L1 -1 7994 7793 6 1358 272 188 16 0 chr6 101407310 101407374 -48109663 + A-rich Low_complexity Low_complexity 3 67 0 6 1358 21 36 0 0 chr6 101407429 101407457 -48109580 + AT_rich Low_complexity Low_complexity 1 28 0 6 1358 832 146 0 27 chr6 101407959 101408142 -48108895 + CT-rich Low_complexity Low_complexity 3 180 0 6 1358 186 276 0 0 chr6 101408143 101408201 -48108836 + T-rich Low_complexity Low_complexity 3 60 0 6 1358 241 297 81 0 chr6 101408247 101408321 -48108716 - ID4 SINE ID -2 81 2 6 1358 354 281 10 0 chr6 101408487 101408583 -48108454 + CT-rich Low_complexity Low_complexity 2 98 0 6 1358 976 216 23 61 chr6 101409466 101409727 -48107310 + MYSERV16_I-int LTR ERVK 1565 1815 -511 6 1358 345 226 38 61 chr6 101409751 101409883 -48107154 - Tigger7 DNA MER2_type -95 2396 2268 6 1358 764 246 25 35 chr6 101409914 101410112 -48106925 - B3A SINE B2 -1 197 2 6 1358 364 308 91 8 chr6 101410178 101410299 -48106738 - RSINE1 SINE B4 -17 148 18 6 1358 889 49 16 0 chr6 101410315 101410438 -48106599 + (TCTA)n Simple_repeat Simple_repeat 4 128 0 6 1358 280 275 36 18 chr6 101410440 101410551 -48106486 - ID_B1 SINE B4 -3 221 109 6 1358 302 338 27 61 chr6 101410775 101410923 -48106114 - MLT1D LTR MaLR -206 299 157 6 1358 24 32 0 0 chr6 101411369 101411400 -48105637 + AT_rich Low_complexity Low_complexity 1 31 0 6 1358 475 167 0 0 chr6 101412146 101412224 -48104813 - ID_B1 SINE B4 0 224 147 6 1358 387 0 0 0 chr6 101412332 101412375 -48104662 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1358 2354 75 47 0 chr6 101412548 101412868 -48104169 - L1_Mus1 LINE L1 0 6567 6233 6 1358 1756 226 45 8 chr6 101413082 101413478 -48103559 + MTD LTR MaLR 1 411 -8 6 1358 341 319 123 5 chr6 101415876 101416071 -48100966 - MIRb SINE MIR -20 248 31 6 1358 289 335 112 27 chr6 101416422 101416927 -48100110 + L2a LINE L2 2613 3160 -266 6 1358 243 345 0 0 chr6 101417350 101417434 -48099603 + L2a LINE L2 3318 3401 -25 6 1358 1889 192 32 0 chr6 101417513 101417887 -48099150 - ORR1B1 LTR MaLR -8 386 1 6 1358 696 271 360 4 chr6 101417919 101418177 -48098860 - ORR1E LTR MaLR -2 377 28 6 1358 2401 35 7 0 chr6 101418776 101419060 -48097977 + L1Md_F2 LINE L1 6283 6568 -14 6 1358 694 183 155 36 chr6 101419185 101419378 -48097659 - B3 SINE B2 0 216 1 6 1358 370 291 0 6 chr6 101419461 101419784 -48097253 + (TA)n Simple_repeat Simple_repeat 1 320 0 6 1358 423 0 0 0 chr6 101419852 101419899 -48097138 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1358 240 280 0 0 chr6 101420410 101420460 -48096577 - ID4_ SINE ID -10 73 24 6 1358 1247 84 0 6 chr6 101421120 101421299 -48095738 + (TTC)n Simple_repeat Simple_repeat 3 180 0 6 1358 257 171 24 0 chr6 101421518 101421600 -48095437 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 6 1358 235 233 33 0 chr6 101422403 101422463 -48094574 + GA-rich Low_complexity Low_complexity 2 63 0 6 1358 323 278 112 8 chr6 101422684 101422818 -48094219 + MER5A DNA MER1_type 22 169 -20 6 1358 433 307 0 73 chr6 101423023 101423174 -48093863 - ID_B1 SINE B4 -1 223 84 6 1358 231 36 0 0 chr6 101423223 101423251 -48093786 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1358 264 167 0 0 chr6 101423978 101424026 -48093011 + GA-rich Low_complexity Low_complexity 2 49 0 6 1358 196 290 0 16 chr6 101424696 101424822 -48092215 + GA-rich Low_complexity Low_complexity 3 126 0 6 1358 547 233 6 6 chr6 101424838 101425015 -48092022 + GA-rich Low_complexity Low_complexity 2 178 0 6 1358 22 70 0 0 chr6 101425581 101425624 -48091413 + AT_rich Low_complexity Low_complexity 1 43 0 6 1358 353 335 125 19 chr6 101425657 101425873 -48091164 + B4 SINE B4 13 251 -41 6 1358 213 308 95 9 chr6 101426434 101426539 -48090498 + L2b LINE L2 3051 3164 -211 6 1358 22 0 0 0 chr6 101426566 101426588 -48090449 + AT_rich Low_complexity Low_complexity 1 22 0 6 1358 695 137 0 8 chr6 101427081 101427206 -48089831 + (TC)n Simple_repeat Simple_repeat 1 124 0 6 1358 274 255 87 27 chr6 101427724 101427873 -48089164 - MLT1L LTR MaLR -17 593 436 6 1358 252 0 0 0 chr6 101427994 101428022 -48089015 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1358 1748 190 36 98 chr6 101428028 101428372 -48088665 + ORR1B1 LTR MaLR 1 348 -46 6 1358 1089 89 7 0 chr6 101428372 101428518 -48088519 + B1_Mus1 SINE Alu 2 148 0 6 1358 1748 190 36 98 chr6 101428518 101428593 -48088444 + ORR1B1 LTR MaLR 349 394 0 6 1358 699 281 71 68 chr6 101428837 101429231 -48087806 - L1MB8 LINE L1 0 6178 5784 6 1358 459 0 0 0 chr6 101429250 101429301 -48087736 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1358 261 0 0 0 chr6 101429439 101429468 -48087569 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1358 452 317 62 59 chr6 101429515 101429803 -48087234 - B4A SINE B4 0 292 4 6 1358 394 332 72 19 chr6 101429806 101430015 -48087022 - L1MB8 LINE L1 -395 5789 5570 6 1358 190 206 16 16 chr6 101430933 101430997 -48086040 + CT-rich Low_complexity Low_complexity 5 68 0 6 1358 228 217 22 0 chr6 101431264 101431310 -48085727 + L1M2a LINE L1 694 740 -6428 6 1358 1002 245 97 8 chr6 101431449 101431716 -48085321 + B4 SINE B4 2 292 0 6 1358 659 147 11 33 chr6 101431745 101431928 -48085109 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 6 1358 202 42 0 0 chr6 101431928 101431952 -48085085 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1358 1012 199 31 39 chr6 101431952 101432166 -48084871 + RMER17C LTR ERVK 1 236 -722 6 1358 644 74 11 0 chr6 101432166 101432261 -48084776 + (TC)n Simple_repeat Simple_repeat 1 96 0 6 1358 1012 197 52 31 chr6 101432261 101432433 -48084604 + RMER17C LTR ERVK 232 404 -6 6 1358 423 0 0 0 chr6 101432435 101432482 -48084555 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1358 241 135 0 0 chr6 101433591 101433628 -48083409 - MER117 DNA MER1_type -131 66 30 6 1358 981 284 7 15 chr6 101433646 101433918 -48083119 + B4A SINE B4 1 270 -22 6 1358 492 48 0 0 chr6 101433986 101434049 -48082988 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1358 244 277 11 134 chr6 101434049 101434194 -48082843 - Lx9 LINE L1 -531 7113 6880 6 1358 392 293 0 17 chr6 101434607 101434725 -48082312 - MIR SINE MIR -121 141 26 6 1358 558 0 0 0 chr6 101434868 101434930 -48082107 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1358 3986 43 8 6 chr6 101435376 101435868 -48081169 - L1Md_F2 LINE L1 0 6582 6090 6 1358 287 322 59 8 chr6 101436790 101436909 -48080128 + RSINE1 SINE B4 41 165 0 6 1358 27 0 0 0 chr6 101437059 101437086 -48079951 + AT_rich Low_complexity Low_complexity 1 27 0 6 1358 22 35 0 0 chr6 101437363 101437392 -48079645 + AT_rich Low_complexity Low_complexity 1 29 0 6 1358 249 305 47 19 chr6 101437554 101437661 -48079376 - RMER1C Other Other -6 1336 1227 6 1358 203 0 37 0 chr6 101438483 101438510 -48078527 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 6 1358 324 127 0 0 chr6 101439179 101439234 -48077803 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 6 1358 2785 55 54 8 chr6 101440214 101440410 -48076627 + RLTR44A LTR ERVK 1 199 -206 6 1358 369 0 0 0 chr6 101440410 101440451 -48076586 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1358 2785 55 54 8 chr6 101440451 101440641 -48076396 + RLTR44A LTR ERVK 200 403 -2 6 1358 354 302 176 20 chr6 101440775 101441025 -48076012 - B4 SINE B4 0 292 4 7 1358 283 346 56 9 chr6 101441033 101441141 -48075896 - PB1D10 SINE Alu -2 115 3 7 1358 185 165 30 40 chr6 101441446 101441547 -48075490 + (TTATA)n Simple_repeat Simple_repeat 5 104 0 7 1358 563 254 30 24 chr6 101441637 101441806 -48075231 - B3A SINE B2 -24 174 5 7 1358 21 0 0 0 chr6 101442374 101442395 -48074642 + AT_rich Low_complexity Low_complexity 1 21 0 7 1358 404 311 0 0 chr6 101442863 101442982 -48074055 - B3A SINE B2 -79 119 1 7 1358 259 305 96 53 chr6 101443435 101443643 -48073394 + L1MC4 LINE L1 6413 6629 -1253 7 1358 229 97 0 0 chr6 101443704 101443735 -48073302 - MT2A LTR ERVL 0 533 503 7 1358 1495 277 66 2 chr6 101443765 101444188 -48072849 + Lx8 LINE L1 6432 6881 -592 7 1358 1510 281 85 17 chr6 101444211 101444692 -48072345 + Lx8 LINE L1 6956 7469 -4 7 1358 292 372 48 12 chr6 101444723 101445055 -48071982 + L1MC4 LINE L1 6859 7202 -840 7 1358 198 0 0 0 chr6 101445910 101445932 -48071105 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1358 1242 115 36 5 chr6 101445958 101446150 -48070887 - L1_Mus3 LINE L1 -2 6636 6439 7 1358 3272 70 5 2 chr6 101446152 101446566 -48070471 + L1_Mus3 LINE L1 5964 6378 -188 7 1358 189 256 0 0 chr6 101447083 101447122 -48069915 - L2c LINE L2 -12 3375 3337 7 1358 225 370 49 108 chr6 101447485 101447688 -48069349 - MamGypLTR2c LTR Gypsy -701 367 177 7 1358 193 340 81 89 chr6 101447740 101447998 -48069039 + L2c LINE L2 3127 3382 -5 7 1358 934 159 14 20 chr6 101448384 101448532 -48068505 + B1_Mus1 SINE Alu 1 147 -1 7 1358 516 60 11 35 chr6 101448538 101448625 -48068412 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 7 1358 935 158 213 21 chr6 101449261 101449449 -48067588 + URR1B DNA MER1_type 2 225 0 7 1359 23 33 0 0 chr6 101450258 101450288 -48066749 + AT_rich Low_complexity Low_complexity 1 30 0 7 1359 725 326 42 13 chr6 101451033 101451269 -48065768 + B4A SINE B4 1 243 -49 7 1359 270 324 162 0 chr6 101451269 101451374 -48065663 + B4A SINE B4 171 292 0 7 1359 342 0 0 0 chr6 101452019 101452057 -48064980 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1359 660 26 0 0 chr6 101452057 101452134 -48064903 + (GA)n Simple_repeat Simple_repeat 1 78 0 7 1359 3359 140 60 18 chr6 101453546 101454093 -48062944 - Lx4B LINE L1 -13 7045 6476 7 1359 1722 219 56 6 chr6 101454256 101454615 -48062422 + MTD LTR MaLR 4 380 -39 7 1359 219 69 0 0 chr6 101454805 101454834 -48062203 + (TA)n Simple_repeat Simple_repeat 1 29 0 7 1359 2534 196 126 12 chr6 101455142 101455658 -48061379 + RMER15 LTR ERVL 1 575 0 7 1359 1315 252 97 6 chr6 101456381 101456720 -48060317 + ORR1D1 LTR MaLR 1 370 -4 7 1359 696 274 5 42 chr6 101456922 101457135 -48059902 - MER2 DNA MER2_type -58 287 83 7 1359 1408 157 67 8 chr6 101457146 101457384 -48059653 + Lx4A LINE L1 6793 7044 -14 7 1359 243 0 0 0 chr6 101457384 101457411 -48059626 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1359 712 271 52 81 chr6 101458780 101459202 -48057835 + Lx9 LINE L1 7234 7643 -1 7 1359 780 284 229 4 chr6 101459672 101460182 -48056855 - L1MA8 LINE L1 -66 6225 5602 7 1359 1759 244 47 12 chr6 101460355 101460845 -48056192 - RCHARR1 DNA MER1_type -1 973 467 7 1359 856 175 16 129 chr6 101460874 101461183 -48055854 - Lx9 LINE L1 -2 7642 7369 7 1359 581 217 87 47 chr6 101461183 101461276 -48055761 - RLTR20D LTR ERVK 0 578 492 7 1359 441 0 0 0 chr6 101461276 101461325 -48055712 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1359 581 217 87 47 chr6 101461325 101461381 -48055656 - RLTR20D LTR ERVK -87 491 425 7 1359 894 255 31 51 chr6 101461366 101461659 -48055378 - RLTR20D LTR ERVK -281 287 1 7 1359 929 268 122 3 chr6 101461659 101461921 -48055116 - Lx9 LINE L1 -271 7373 7080 7 1359 717 97 0 0 chr6 101461921 101462024 -48055013 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 1359 929 268 122 3 chr6 101462024 101462049 -48054988 - Lx9 LINE L1 -565 7079 7053 7 1359 801 201 69 0 chr6 101462048 101462222 -48054815 + Lx9 LINE L1 6866 7051 -593 7 1359 1445 301 50 21 chr6 101462217 101462702 -48054335 - Lx8 LINE L1 -935 6538 6040 7 1359 233 20 80 20 chr6 101462930 101462980 -48054057 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 7 1359 313 277 123 34 chr6 101463010 101463156 -48053881 + Cheshire DNA MER1_type 149 307 -2113 7 1359 477 0 0 0 chr6 101463387 101463440 -48053597 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 7 1359 228 232 0 0 chr6 101464200 101464256 -48052781 + CT-rich Low_complexity Low_complexity 1 56 0 7 1359 411 83 0 0 chr6 101464257 101464317 -48052720 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1359 965 275 20 70 chr6 101464361 101464662 -48052375 - B4 SINE B4 -4 288 3 7 1359 314 285 42 35 chr6 101464717 101464859 -48052178 - Charlie26a DNA MER1_type -110 215 73 7 1359 260 352 48 43 chr6 101465188 101465375 -48051662 + MIR SINE MIR 35 222 -40 7 1359 369 0 0 0 chr6 101466313 101466354 -48050683 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1359 200 222 31 16 chr6 101466978 101467042 -48049995 + (TTTAA)n Simple_repeat Simple_repeat 3 67 0 7 1359 426 342 83 0 chr6 101467173 101467354 -48049683 - MER58A DNA MER1_type -18 206 11 7 1359 411 38 0 0 chr6 101468003 101468056 -48048981 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1359 488 16 16 0 chr6 101468077 101468138 -48048899 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1359 339 311 96 24 chr6 101468157 101468282 -48048755 - B4 SINE B4 -8 284 151 7 1359 182 341 59 0 chr6 101468640 101468725 -48048312 - MIRb SINE MIR -6 262 173 7 1359 246 253 48 0 chr6 101469828 101469911 -48047126 + GA-rich Low_complexity Low_complexity 1 87 0 7 1359 297 181 32 0 chr6 101469935 101470029 -48047008 + GA-rich Low_complexity Low_complexity 4 100 0 7 1359 1138 167 41 192 chr6 101470035 101470518 -48046519 - RMER17C LTR ERVK 0 410 1 7 1359 230 187 39 31 chr6 101470542 101470669 -48046368 + GA-rich Low_complexity Low_complexity 1 128 0 7 1359 3678 191 105 31 chr6 101471393 101472194 -48044843 - RMER13A LTR ERVK 0 860 1 7 1359 180 152 0 0 chr6 101472296 101472329 -48044708 + (TTA)n Simple_repeat Simple_repeat 2 34 0 7 1359 1187 274 61 26 chr6 101472837 101473182 -48043855 + MTE2b LTR MaLR 1 357 -22 7 1359 450 0 0 0 chr6 101474020 101474070 -48042967 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1359 240 243 55 151 chr6 101474354 101474553 -48042484 + ORR1E LTR MaLR 64 243 -116 7 1359 186 279 60 48 chr6 101474700 101474783 -48042254 - MIRb SINE MIR -161 107 24 7 1359 210 263 0 34 chr6 101474942 101475001 -48042036 + C-rich Low_complexity Low_complexity 2 58 0 7 1359 2361 122 36 14 chr6 101475622 101475980 -48041057 + ORR1B2 LTR MaLR 1 366 -1 7 1359 635 337 68 19 chr6 101476353 101476619 -48040418 - B4A SINE B4 0 292 14 7 1359 382 373 56 28 chr6 101477261 101477476 -48039561 + Charlie8 DNA MER1_type 80 300 -2128 7 1359 501 394 93 14 chr6 101477834 101478179 -48038858 - MER21B LTR ERV1 -180 683 312 7 1359 356 308 44 0 chr6 101478326 101478417 -48038620 - MER21B LTR ERV1 -768 95 1 7 1359 651 263 74 60 chr6 101478582 101478938 -48038099 - MLT1A1 LTR MaLR 0 408 1 7 1359 1029 186 51 54 chr6 101479565 101479878 -48037159 + L1MB1 LINE L1 4898 5209 -931 7 1359 1126 265 32 67 chr6 101479915 101480291 -48036746 + MTEa LTR MaLR 16 378 -1 7 1359 976 137 14 0 chr6 101480351 101480490 -48036547 + B1_Mur4 SINE Alu 3 143 -7 7 1359 1068 281 156 30 chr6 101480543 101481298 -48035739 + L1MB1 LINE L1 5294 6153 -138 7 1359 256 232 75 116 chr6 101481439 101481636 -48035401 - MIRb SINE MIR -8 260 71 7 1359 360 301 50 44 chr6 101482360 101482520 -48034517 + MER121 Unknown Unknown 192 352 -60 7 1359 654 140 0 0 chr6 101483089 101483203 -48033834 + (TA)n Simple_repeat Simple_repeat 2 115 0 7 1359 1008 287 14 17 chr6 101483317 101483608 -48033429 - B4A SINE B4 0 292 3 7 1359 568 294 39 29 chr6 101483694 101483901 -48033136 + MER3 DNA MER1_type 1 209 0 7 1359 1306 243 106 23 chr6 101485361 101485711 -48031326 - MTEa LTR MaLR 0 379 1 7 1359 259 333 99 28 chr6 101486026 101486168 -48030869 - L2b LINE L2 0 3375 3224 7 1359 1321 243 36 47 chr6 101486961 101487323 -48029714 + MTEb LTR MaLR 13 370 -9 7 1359 645 88 0 0 chr6 101487325 101487427 -48029610 + (CAA)n Simple_repeat Simple_repeat 2 103 0 7 1359 588 333 59 11 chr6 101487432 101487705 -48029332 - L1M5 LINE L1 -510 5652 5367 7 1359 737 208 209 40 chr6 101488903 101489128 -48027909 - B4 SINE B4 -24 268 6 7 1359 584 285 133 46 chr6 101490362 101491036 -48026001 - L1M5 LINE L1 -2987 3159 2427 7 1359 611 300 0 30 chr6 101491044 101491209 -48025828 - B3A SINE B2 0 198 39 7 1359 3852 138 145 2 chr6 101491981 101492250 -48024787 + RMER6D LTR ERVK 1 356 -364 7 1359 516 32 0 0 chr6 101492250 101492312 -48024725 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1359 3852 138 145 2 chr6 101492312 101492668 -48024369 + RMER6D LTR ERVK 357 715 -5 7 1359 459 317 98 29 chr6 101492668 101492862 -48024175 + MLT1J LTR MaLR 98 306 -206 7 1359 459 0 0 0 chr6 101492899 101492950 -48024087 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1359 306 0 0 0 chr6 101492951 101492985 -48024052 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1359 2989 158 108 21 chr6 101492986 101493521 -48023516 - RLTR31A_Mm LTR ERVK -2 582 1 7 1359 203 67 0 32 chr6 101493521 101493552 -48023485 + (TATG)n Simple_repeat Simple_repeat 1 30 0 7 1359 303 272 14 7 chr6 101493556 101493704 -48023333 + (TA)n Simple_repeat Simple_repeat 2 150 0 7 1359 305 125 18 0 chr6 101493869 101493925 -48023112 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1359 313 312 61 26 chr6 101493934 101494049 -48022988 - MER5A DNA MER1_type -33 156 38 7 1359 192 319 242 33 chr6 101494093 101494518 -48022519 - L2 LINE L2 -382 3037 2524 7 1359 663 331 49 52 chr6 101496146 101496452 -48020585 + MER2 DNA MER2_type 15 319 -26 7 1359 21 0 0 0 chr6 101497081 101497102 -48019935 + AT_rich Low_complexity Low_complexity 1 21 0 7 1359 1014 246 170 3 chr6 101497334 101497652 -48019385 - MTEa LTR MaLR 0 379 9 7 1359 819 246 23 50 chr6 101498360 101498578 -48018459 + B3 SINE B2 1 212 -4 7 1359 3861 48 5 0 chr6 101498924 101499543 -48017494 - L1_Mus1 LINE L1 -531 6036 5415 7 1359 3845 50 2 2 chr6 101499540 101500000 -48017037 + L1_Mus1 LINE L1 6006 6465 -102 7 1359 640 100 0 6 chr6 101500001 101500116 -48016921 + L1_Mus2 LINE L1 6466 6582 0 1 1359 21 36 0 0 chr6 101500288 101500316 -48016721 + AT_rich Low_complexity Low_complexity 1 28 0 2 1359 273 252 208 20 chr6 101500326 101500427 -48016610 + PB1D9 SINE Alu 1 120 0 3 1359 839 313 14 58 chr6 101501475 101501767 -48015270 - B4A SINE B4 -7 285 7 4 1359 301 326 70 14 chr6 101501794 101501937 -48015100 + MIRc SINE MIR 43 193 -75 5 1359 1130 117 6 0 chr6 101503784 101503963 -48013074 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1359 418 225 7 13 chr6 101504092 101504245 -48012792 + (TATG)n Simple_repeat Simple_repeat 4 155 0 7 1359 459 0 0 0 chr6 101504964 101505015 -48012022 + (TA)n Simple_repeat Simple_repeat 2 52 0 8 1359 618 319 75 8 chr6 101508088 101508341 -48008696 - L2a LINE L2 -20 3406 3137 9 1359 1415 38 32 11 chr6 101508816 101508846 -48008191 - B2_Mm1a SINE B2 -2 191 157 1 1359 207 0 0 0 chr6 101508846 101508869 -48008168 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1359 1415 38 32 11 chr6 101508869 101509024 -48008013 - B2_Mm1a SINE B2 -37 156 2 1 1359 248 312 12 12 chr6 101509142 101509223 -48007814 + BC1_Mm scRNA scRNA 3 83 -69 1 1359 489 303 47 26 chr6 101509674 101509864 -48007173 + MLT2B1 LTR ERVL 1 194 -326 1 1359 522 321 6 48 chr6 101510593 101510760 -48006277 + B4A SINE B4 117 276 -16 1 1359 669 291 99 45 chr6 101510762 101510785 -48006252 - MER99 DNA hAT? -320 511 496 1 1359 441 36 0 0 chr6 101510785 101510840 -48006197 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1359 669 291 99 45 chr6 101510840 101511240 -48005797 - MER99 DNA hAT? -336 495 65 1 1359 800 128 8 0 chr6 101511369 101511502 -48005535 + (GA)n Simple_repeat Simple_repeat 2 135 0 1 1359 381 196 19 107 chr6 101512342 101512445 -48004592 + RLTR20B3 LTR ERVK 484 577 0 1 1359 459 0 0 0 chr6 101513365 101513416 -48003621 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1359 8829 149 108 82 chr6 101513741 101516008 -48001029 + MYSERV16_I-int LTR ERVK 1 2326 0 2 1359 1982 203 114 51 chr6 101516008 101516434 -48000603 + RLTR20B2 LTR ERVK 1 452 -108 2 1359 288 0 0 0 chr6 101516434 101516466 -48000571 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1359 1982 203 114 51 chr6 101516466 101516564 -48000473 + RLTR20B2 LTR ERVK 453 557 -3 2 1359 242 357 62 0 chr6 101516811 101516940 -48000097 - MIRb SINE MIR -59 209 73 2 1359 276 30 0 0 chr6 101516961 101516994 -48000043 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1359 188 143 24 0 chr6 101517007 101517049 -47999988 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1359 890 148 21 78 chr6 101519576 101519767 -47997270 + B2_Mm2 SINE B2 2 181 -14 2 1359 447 40 13 39 chr6 101519857 101519935 -47997102 + L1_Mus2 LINE L1 6490 6565 -1 2 1359 419 271 28 0 chr6 101520251 101520358 -47996679 - Lx8 LINE L1 -270 7203 7094 2 1359 548 222 163 23 chr6 101520357 101520470 -47996567 + Lx8 LINE L1 7216 7336 -137 2 1359 594 135 0 0 chr6 101520470 101520574 -47996463 + (ATG)n Simple_repeat Simple_repeat 2 105 0 2 1359 548 222 163 23 chr6 101520574 101520681 -47996356 + Lx8 LINE L1 7337 7467 -6 2 1359 312 298 135 10 chr6 101520813 101521013 -47996024 + MIRb SINE MIR 34 262 0 3 1359 199 72 23 23 chr6 101521088 101521131 -47995906 + (TTTTTA)n Simple_repeat Simple_repeat 4 46 0 3 1359 36566 43 2 14 chr6 101521133 101527254 -47989783 - L1Md_A LINE L1 -2 6580 535 3 1359 2758 91 2 0 chr6 101527431 101527826 -47989211 - L1_Mm LINE L1 -311 5572 5177 3 1359 3700 53 0 2 chr6 101527827 101528281 -47988756 + L1_Mus1 LINE L1 6115 6567 0 3 1359 270 324 51 51 chr6 101528595 101528712 -47988325 - MLT1H2 LTR MaLR -268 221 105 3 1359 4642 31 7 9 chr6 101528811 101529372 -47987665 + L1Md_F3 LINE L1 6011 6570 -14 3 1359 1158 58 0 0 chr6 101529388 101529527 -47987510 + B1_Mm SINE Alu 1 139 -8 3 1359 450 0 0 0 chr6 101529527 101529577 -47987460 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 1359 672 300 33 23 chr6 101529989 101530204 -47986833 + MLT1K LTR MaLR 377 593 -2 3 1359 489 237 291 13 chr6 101530433 101530591 -47986446 - B3 SINE B2 0 216 15 4 1359 444 37 0 0 chr6 101530628 101530682 -47986355 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1359 609 282 96 46 chr6 101530692 101530952 -47986085 - B4A SINE B4 -18 274 2 4 1359 229 292 76 11 chr6 101532139 101532243 -47984794 - MIRm SINE MIR -116 160 48 4 1359 495 33 0 0 chr6 101532290 101532351 -47984686 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 4 1359 358 211 0 0 chr6 101532419 101532476 -47984561 - ID_B1 SINE B4 -21 203 147 4 1359 274 237 68 97 chr6 101532476 101532522 -47984515 - B1F SINE Alu -21 128 29 4 1359 363 250 60 0 chr6 101532488 101532572 -47984465 - ID_B1 SINE B4 -125 99 11 4 1359 864 125 74 4 chr6 101533006 101533155 -47983882 + ORR1C2 LTR MaLR 213 384 0 4 1359 225 94 0 0 chr6 101533297 101533329 -47983708 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 4 1359 316 270 149 28 chr6 101533356 101533497 -47983540 - MIRm SINE MIR -118 158 1 4 1359 535 314 65 58 chr6 101534161 101534248 -47982789 + B4A SINE B4 2 91 -201 5 1359 420 20 0 0 chr6 101534248 101534297 -47982740 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1359 535 314 65 58 chr6 101534297 101534469 -47982568 + B4A SINE B4 92 263 -29 5 1359 666 254 66 14 chr6 101534940 101535227 -47981810 - L1_Rod LINE L1 -3615 2232 1931 5 1359 333 47 0 0 chr6 101535232 101535275 -47981762 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 5 1359 286 190 0 0 chr6 101535298 101535356 -47981681 - L1_Rod LINE L1 -3940 1907 1850 5 1359 1781 206 21 72 chr6 101535360 101535793 -47981244 + MTD LTR MaLR 1 411 -8 5 1359 737 248 23 30 chr6 101535798 101536097 -47980940 + L1VL1 LINE L1 1 297 -6125 5 1359 31597 77 13 5 chr6 101536120 101541598 -47975439 + L1Md_F2 LINE L1 100 5586 -297 5 1359 7997 50 2 1 chr6 101541598 101542592 -47974445 + L1Md_F2 LINE L1 5587 6581 -1 5 1359 1109 189 34 5 chr6 101542750 101542957 -47974080 - ORR1C2 LTR MaLR 0 384 172 5 1359 255 226 29 19 chr6 101542964 101543058 -47973979 + GA-rich Low_complexity Low_complexity 3 97 0 5 1359 1139 117 0 6 chr6 101543058 101543239 -47973798 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1359 1096 151 49 0 chr6 101543250 101543435 -47973602 - ORR1C2 LTR MaLR -190 194 1 5 1359 292 99 70 0 chr6 101545019 101545090 -47971947 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 1359 329 309 122 65 chr6 101545235 101545498 -47971539 + B4 SINE B4 2 279 -13 6 1359 442 350 46 25 chr6 101546249 101546533 -47970504 + B4A SINE B4 3 292 0 6 1359 285 270 110 0 chr6 101546545 101546645 -47970392 + PB1D10 SINE Alu 5 115 -2 6 1359 815 133 35 14 chr6 101547335 101547480 -47969557 - URR1B DNA MER1_type 0 225 78 6 1359 246 214 40 20 chr6 101547531 101547631 -47969406 + (TA)n Simple_repeat Simple_repeat 1 102 0 6 1359 16217 59 1 0 chr6 101547632 101550507 -47966530 - L1Md_F2 LINE L1 0 6582 3705 6 1359 425 272 0 0 chr6 101550507 101550588 -47966449 - URR1B DNA MER1_type -144 81 1 6 1359 4343 98 2 2 chr6 101550974 101551595 -47965442 + Lx2 LINE L1 6205 6825 -172 6 1359 190 270 61 45 chr6 101552573 101552639 -47964398 - MIR SINE MIR -185 77 11 6 1359 483 337 106 38 chr6 101554727 101554992 -47962045 + MLT1I LTR MaLR 108 390 -21 6 1359 186 71 0 0 chr6 101555411 101555439 -47961598 + (TTG)n Simple_repeat Simple_repeat 1 28 0 7 1359 1110 66 0 0 chr6 101555440 101555577 -47961460 - B1_Mm SINE Alu -6 141 5 7 1359 1611 271 59 4 chr6 101555832 101556340 -47960697 - Lx8 LINE L1 -209 7264 6729 7 1359 432 0 0 0 chr6 101556428 101556476 -47960561 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 7 1359 459 264 0 54 chr6 101556479 101556591 -47960446 - PB1D10 SINE Alu -11 106 1 7 1359 1676 262 29 7 chr6 101556772 101557218 -47959819 + Lx8 LINE L1 6200 6655 -818 7 1359 296 297 44 0 chr6 101557251 101557342 -47959695 + Lx8 LINE L1 6808 6902 -571 7 1359 900 251 94 8 chr6 101557452 101557717 -47959320 - B4 SINE B4 -4 288 1 7 1359 2304 215 34 28 chr6 101557832 101558477 -47958560 + RLTR31_Mur LTR ERVK 4 553 0 7 1359 24 0 0 0 chr6 101558897 101558921 -47958116 + AT_rich Low_complexity Low_complexity 1 24 0 7 1359 226 179 0 0 chr6 101560783 101560822 -47956215 - U2 snRNA snRNA -149 39 1 7 1359 1114 71 14 0 chr6 101562062 101562202 -47954835 + B1_Mus2 SINE Alu 1 142 -5 8 1359 366 87 27 64 chr6 101562580 101562690 -47954347 + (TTTA)n Simple_repeat Simple_repeat 3 108 0 8 1359 1367 71 32 5 chr6 101562699 101562884 -47954153 - B2_Mm2 SINE B2 -4 191 2 8 1359 473 297 205 13 chr6 101564185 101564424 -47952613 + B4 SINE B4 1 285 -7 8 1359 327 304 86 26 chr6 101564436 101564588 -47952449 + HAL1-3A_ME LINE L1 1986 2146 -712 8 1359 2559 72 59 0 chr6 101564696 101565069 -47951968 - L1_Mm LINE L1 -398 5485 5091 8 1359 511 282 0 44 chr6 101565586 101565723 -47951314 + RSINE1 SINE B4 4 134 -31 8 1359 657 69 0 0 chr6 101565727 101565814 -47951223 + (CA)n Simple_repeat Simple_repeat 2 88 0 8 1359 331 327 194 26 chr6 101565955 101566373 -47950664 - MLT1D LTR MaLR 0 505 18 8 1359 389 295 30 8 chr6 101567239 101567372 -47949665 - MER2 DNA MER2_type -138 207 72 8 1359 1972 178 42 8 chr6 101567773 101568152 -47948885 - ORR1B1 LTR MaLR -2 392 1 9 1359 297 51 0 0 chr6 101568258 101568297 -47948740 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1359 378 0 0 0 chr6 101568607 101568649 -47948388 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1359 396 223 191 0 chr6 101568649 101568736 -47948301 - B1F SINE Alu -21 128 24 9 1359 23603 112 29 64 chr6 101568760 101575713 -47941324 - Lx LINE L1 -5 6649 211 9 1359 1236 116 187 0 chr6 101575714 101575939 -47941098 - RLTR47_MM LTR ERV1 -265 267 1 9 1359 187 0 15 121 chr6 101576096 101576162 -47940875 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 9 1359 239 307 0 13 chr6 101576495 101576571 -47940466 + L1_Rod LINE L1 5501 5575 -272 9 1359 459 157 0 0 chr6 101577119 101577227 -47939810 + CT-rich Low_complexity Low_complexity 1 108 0 9 1359 880 57 16 0 chr6 101577929 101578052 -47938985 + (GA)n Simple_repeat Simple_repeat 2 126 0 9 1359 370 0 40 0 chr6 101578153 101578203 -47938834 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1359 499 250 0 10 chr6 101578211 101578308 -47938729 - RSINE1 SINE B4 -41 124 29 1 1359 2825 49 6 0 chr6 101579169 101579513 -47937524 - ORR1A1 LTR MaLR 0 346 1 1 1359 535 183 45 29 chr6 101579582 101579706 -47937331 - B1_Mur4 SINE Alu -13 137 2 1 1359 832 245 128 20 chr6 101579769 101580019 -47937018 + MTD LTR MaLR 135 411 -8 1 1359 3727 42 49 0 chr6 101580313 101580766 -47936271 - MT2C_Mm LTR ERVL 0 475 1 1 1360 1350 79 17 0 chr6 101584286 101584464 -47932573 + B2_Mm2 SINE B2 1 181 -14 1 1360 32 75 0 0 chr6 101584586 101584653 -47932384 + AT_rich Low_complexity Low_complexity 1 67 0 1 1360 2500 231 49 14 chr6 101584867 101585439 -47931598 - Lx6 LINE L1 -8 7452 6861 1 1360 1863 218 23 16 chr6 101585420 101585862 -47931175 - Lx6 LINE L1 -763 6697 6253 1 1360 384 179 40 0 chr6 101585881 101585977 -47931060 - L1_Mur3 LINE L1 -315 5568 5464 1 1360 6945 146 80 80 chr6 101586201 101587971 -47929066 - L1_Mur3 LINE L1 -1678 4202 2433 1 1360 1410 253 62 22 chr6 101588554 101588955 -47928082 + BGLII_B LTR ERVK 22 438 -3 1 1360 187 309 12 24 chr6 101589623 101589706 -47927331 + L2a LINE L2 3334 3415 -11 1 1360 237 267 0 0 chr6 101589971 101590031 -47927006 - MER58A DNA MER1_type -3 221 162 1 1360 484 297 8 0 chr6 101590051 101590169 -47926868 - MER58A DNA MER1_type -105 119 1 1 1360 794 191 0 0 chr6 101590404 101590540 -47926497 + B1_Mur1 SINE Alu 7 142 -7 1 1360 244 301 139 35 chr6 101590541 101590713 -47926324 - MER33 DNA MER1_type -134 190 1 1 1360 286 316 88 39 chr6 101590726 101590930 -47926107 - MER20 DNA MER1_type -5 214 1 1 1360 452 295 6 113 chr6 101592116 101592284 -47924753 + Charlie12 DNA MER1_type 18 167 -2706 1 1360 344 261 21 21 chr6 101592222 101592316 -47924721 - RMER30 DNA MER1_type -99 103 10 1 1360 462 36 0 0 chr6 101592635 101592691 -47924346 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1360 33816 35 1 0 chr6 101593188 101599460 -47917577 + L1Md_T LINE L1 1 5589 -297 1 1360 8991 7 0 0 chr6 101599461 101600456 -47916581 + L1Md_T LINE L1 5591 6585 0 1 1360 301 22 43 0 chr6 101602554 101602600 -47914437 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1360 234 0 0 0 chr6 101603902 101603928 -47913109 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1360 218 203 67 15 chr6 101604201 101604264 -47912773 + MIR3 SINE MIR 103 165 -103 1 1360 749 307 85 17 chr6 101604275 101604784 -47912253 + L1MA4 LINE L1 5348 5932 -368 1 1360 528 266 98 23 chr6 101605102 101605275 -47911762 + B4 SINE B4 78 263 -29 1 1360 208 88 0 56 chr6 101605422 101605458 -47911579 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 1 1360 477 0 0 0 chr6 101605460 101605513 -47911524 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1360 1381 43 48 0 chr6 101605991 101606179 -47910858 - L1_Mus1 LINE L1 -736 5831 5635 1 1360 4743 56 2 2 chr6 101606179 101606765 -47910272 + L1_Mus1 LINE L1 5981 6566 -1 1 1360 876 91 0 0 chr6 101607265 101607397 -47909640 + (TCCCC)n Simple_repeat Simple_repeat 5 136 0 1 1360 249 246 17 8 chr6 101607412 101607531 -47909506 + CT-rich Low_complexity Low_complexity 2 121 0 1 1360 297 75 0 0 chr6 101608590 101608630 -47908407 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1360 5630 44 7 3 chr6 101609403 101610089 -47906948 - L1_Mus1 LINE L1 -2 6565 5877 1 1360 3772 92 0 2 chr6 101610089 101610620 -47906417 + L1_Mus1 LINE L1 5334 5863 -20 1 1360 280 250 43 0 chr6 101611014 101611130 -47905907 - Lx9 LINE L1 -6 7638 7518 1 1360 492 174 29 14 chr6 101611134 101611344 -47905693 + (TG)n Simple_repeat Simple_repeat 1 212 0 1 1360 570 29 0 0 chr6 101611346 101611414 -47905623 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1360 477 285 168 18 chr6 101611932 101612425 -47904612 + L1MA7 LINE L1 3118 3684 -2459 1 1360 838 266 50 0 chr6 101612444 101612643 -47904394 + B4A SINE B4 8 216 -76 1 1360 860 274 35 35 chr6 101612712 101613029 -47904008 + L1MA7 LINE L1 3687 4003 -2140 1 1360 853 283 44 82 chr6 101613028 101613370 -47903667 + Lx6 LINE L1 7072 7400 -60 1 1360 228 233 57 49 chr6 101613367 101613489 -47903548 + Lx6 LINE L1 7336 7458 -2 1 1360 2184 288 80 28 chr6 101613491 101614233 -47902804 + L1MA7 LINE L1 4020 4792 -1351 1 1360 3470 73 19 4 chr6 101614233 101614701 -47902336 + MT2C_Mm LTR ERVL 1 475 0 1 1360 2184 288 80 28 chr6 101614701 101615238 -47901799 + L1MA7 LINE L1 4793 5365 -778 1 1360 664 307 104 60 chr6 101615313 101615965 -47901072 + L1MA7 LINE L1 5568 6248 -43 1 1360 31 0 0 0 chr6 101616613 101616644 -47900393 + AT_rich Low_complexity Low_complexity 1 31 0 1 1360 229 343 59 0 chr6 101616726 101616828 -47900209 - MLT1I LTR MaLR -5 406 299 1 1360 226 254 0 42 chr6 101617083 101617177 -47899860 - MIRb SINE MIR -14 254 161 1 1360 1013 0 8 0 chr6 101618386 101618503 -47898534 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 1 1360 274 340 28 28 chr6 101618753 101618862 -47898175 + MLT1J1 LTR MaLR 1 109 -335 1 1360 202 240 20 83 chr6 101619194 101619278 -47897759 - MIRb SINE MIR -104 164 83 1 1360 3409 218 64 14 chr6 101620336 101621210 -47895827 - RMER1A Other Other -13 1017 232 1 1360 540 308 12 31 chr6 101621513 101621656 -47895381 + RSINE1 SINE B4 4 147 -18 1 1360 519 123 0 0 chr6 101621656 101621737 -47895300 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1360 540 308 12 31 chr6 101621737 101621754 -47895283 + RSINE1 SINE B4 148 161 -4 1 1360 239 359 10 0 chr6 101621759 101621862 -47895175 + (CATA)n Simple_repeat Simple_repeat 4 107 0 1 1360 985 189 60 0 chr6 101622733 101622918 -47894119 + ID_B1 SINE B4 7 202 -22 1 1360 531 241 21 42 chr6 101622806 101622949 -47894088 + B1F1 SINE Alu 10 149 0 1 1360 276 149 0 0 chr6 101623113 101623160 -47893877 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 1360 508 230 47 16 chr6 101623161 101623289 -47893748 - RSINE1 SINE B4 -31 134 3 1 1360 288 339 17 17 chr6 101623896 101624016 -47893021 - MLT1B LTR MaLR -270 120 1 1 1360 189 0 0 0 chr6 101624125 101624146 -47892891 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1 1360 210 71 0 0 chr6 101624610 101624638 -47892399 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1360 354 45 0 0 chr6 101624893 101624937 -47892100 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1360 310 310 17 8 chr6 101626393 101626510 -47890527 + CT-rich Low_complexity Low_complexity 5 122 0 1 1360 519 291 67 0 chr6 101627328 101627462 -47889575 + B1F2 SINE Alu 1 143 -6 1 1360 236 320 38 25 chr6 101627976 101628056 -47888981 + MLT1J LTR MaLR 248 328 -184 1 1360 31465 108 14 2 chr6 101628056 101634145 -47882892 + L1_Mus1 LINE L1 395 6567 0 1 1360 411 247 215 17 chr6 101634490 101634667 -47882370 - B3 SINE B2 -3 213 2 1 1360 235 0 57 0 chr6 101634762 101634797 -47882240 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1360 22 0 0 0 chr6 101636238 101636260 -47880777 + AT_rich Low_complexity Low_complexity 1 22 0 1 1360 672 54 0 0 chr6 101636260 101636353 -47880684 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1360 313 351 126 30 chr6 101636365 101636593 -47880444 - RSINE1 SINE B4 -20 272 13 1 1360 411 21 0 0 chr6 101636657 101636705 -47880332 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1360 208 208 226 0 chr6 101636861 101636914 -47880123 + MIRb SINE MIR 52 116 -152 1 1360 402 278 199 39 chr6 101639390 101639708 -47877329 - MTEa LTR MaLR 0 379 3 1 1360 593 289 6 62 chr6 101640434 101640596 -47876441 + RSINE1 SINE B4 4 156 -9 1 1360 441 316 114 80 chr6 101641725 101641962 -47875075 + B4A SINE B4 1 245 -47 1 1360 217 304 0 0 chr6 101641991 101642060 -47874977 + (CATA)n Simple_repeat Simple_repeat 2 70 0 1 1360 477 0 0 0 chr6 101643327 101643380 -47873657 + (CAAAG)n Simple_repeat Simple_repeat 2 54 0 1 1360 461 271 0 8 chr6 101643396 101643515 -47873522 + PB1D7 SINE Alu 3 120 0 1 1360 213 94 0 0 chr6 101643606 101643638 -47873399 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 1 1360 218 288 27 0 chr6 101644100 101644173 -47872864 - MIR3 SINE MIR -17 191 117 1 1360 268 331 71 50 chr6 101644535 101644675 -47872362 + MamRep137 DNA TcMar? 137 279 -165 1 1360 21 36 0 0 chr6 101645248 101645276 -47871761 + AT_rich Low_complexity Low_complexity 1 28 0 1 1360 342 0 0 0 chr6 101645282 101645320 -47871717 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1360 406 325 8 0 chr6 101645335 101645455 -47871582 - B3A SINE B2 -58 140 20 1 1360 1509 241 82 21 chr6 101645994 101646422 -47870615 + RMER20A LTR ERVK 9 462 -54 1 1360 356 278 123 37 chr6 101647148 101647372 -47869665 - L1_Rod LINE L1 -656 5635 5317 1 1360 180 111 0 0 chr6 101647459 101647486 -47869551 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1360 216 0 0 0 chr6 101647486 101647510 -47869527 + (TGG)n Simple_repeat Simple_repeat 3 26 0 1 1360 369 0 0 0 chr6 101647510 101647551 -47869486 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1360 359 359 26 59 chr6 101647552 101647824 -47869213 - Lx9 LINE L1 -186 7458 7196 1 1360 874 312 63 25 chr6 101647815 101648422 -47868615 - L1M2 LINE L1 -752 5391 4762 1 1360 499 284 3 80 chr6 101648586 101648816 -47868221 + L1_Mur3 LINE L1 4407 4620 -1257 1 1360 279 0 0 0 chr6 101650948 101650979 -47866058 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1360 664 321 68 90 chr6 101651060 101651138 -47865899 + MLT1A1 LTR MaLR 3 86 -322 1 1360 758 263 35 25 chr6 101651138 101651337 -47865700 + B3 SINE B2 3 203 -13 1 1360 664 321 68 90 chr6 101651337 101651669 -47865368 + MLT1A1 LTR MaLR 87 404 -4 1 1360 441 307 104 16 chr6 101652091 101652531 -47864506 + L1M3 LINE L1 4039 4517 -1623 1 1360 623 300 44 4 chr6 101652942 101653190 -47863847 + L1MA4 LINE L1 5672 5929 -371 1 1360 754 214 21 0 chr6 101653379 101653524 -47863513 + B1_Mur4 SINE Alu 2 149 -1 1 1360 695 214 0 48 chr6 101653544 101653691 -47863346 + B1_Mus1 SINE Alu 1 140 -8 1 1360 234 323 0 0 chr6 101654344 101654409 -47862628 + (TGG)n Simple_repeat Simple_repeat 3 67 0 1 1360 609 175 11 5 chr6 101654419 101654554 -47862483 + ORR1B1 LTR MaLR 242 382 -2 1 1360 925 125 7 0 chr6 101654567 101654703 -47862334 + B1_Mus1 SINE Alu 2 138 -10 1 1360 365 0 0 22 chr6 101654703 101654749 -47862288 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1 1360 367 356 61 28 chr6 101656523 101656737 -47860300 - MER2 DNA MER2_type -57 288 68 1 1360 239 277 122 47 chr6 101656949 101657097 -47859940 - L1MB4 LINE L1 -115 6065 5907 2 1360 548 268 106 0 chr6 101658477 101658600 -47858437 - ID_B1 SINE B4 -3 221 86 2 1360 576 301 20 103 chr6 101658885 101659137 -47857900 - MER90a LTR ERV1 -17 597 367 2 1360 550 307 68 42 chr6 101659468 101659804 -47857233 - MER90a LTR ERV1 -259 355 11 2 1360 2052 188 37 20 chr6 101660003 101660409 -47856628 + MTC LTR MaLR 1 413 -8 2 1360 206 261 0 0 chr6 101661456 101661502 -47855535 + (TATG)n Simple_repeat Simple_repeat 4 49 0 2 1360 261 75 0 0 chr6 101662184 101662224 -47854813 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1360 1548 275 92 43 chr6 101663215 101663934 -47853103 + L1MB7 LINE L1 5402 6155 -29 2 1360 335 333 40 74 chr6 101664475 101664650 -47852387 - MER2 DNA MER2_type -8 337 169 2 1360 21 0 0 0 chr6 101664995 101665016 -47852021 + AT_rich Low_complexity Low_complexity 1 21 0 2 1360 449 230 21 79 chr6 101665529 101665718 -47851319 - Lx9 LINE L1 -12 7632 7455 2 1360 398 290 27 60 chr6 101666061 101666305 -47850732 + Lx8 LINE L1 4803 5068 -812 2 1360 411 197 67 17 chr6 101666324 101666443 -47850594 + Lx8 LINE L1 5273 5397 -483 2 1360 719 293 37 0 chr6 101666443 101666607 -47850430 + B3 SINE B2 41 210 -6 2 1360 2385 304 92 31 chr6 101666636 101668584 -47848453 + Lx8 LINE L1 5398 7472 -1 2 1360 308 280 57 20 chr6 101668726 101669009 -47848028 + L1MA4 LINE L1 5163 5493 -807 2 1360 640 234 0 30 chr6 101669010 101669142 -47847895 + B1_Mur2 SINE Alu 1 128 -21 2 1360 371 323 80 19 chr6 101669147 101669522 -47847515 + L1MA4 LINE L1 5528 5925 -375 2 1360 256 247 41 10 chr6 101669797 101669895 -47847142 + L1M LINE L1 5320 5420 -754 2 1360 316 246 75 17 chr6 101671409 101671583 -47845454 - L1MA4A LINE L1 -5 6298 6115 2 1360 1129 181 9 35 chr6 101671609 101671838 -47845199 - URR1B DNA MER1_type -2 223 1 2 1360 2105 145 68 14 chr6 101672073 101672443 -47844594 - ORR1B1 LTR MaLR -4 390 1 2 1360 258 270 46 46 chr6 101672548 101672699 -47844338 + MIRc SINE MIR 27 174 -88 2 1360 2964 23 0 42 chr6 101672723 101673084 -47843953 - ORR1A0 LTR MaLR 0 346 1 2 1360 737 169 0 164 chr6 101673722 101673899 -47843138 + B1_Mur4 SINE Alu 2 149 -1 2 1360 288 260 27 0 chr6 101673917 101673990 -47843047 + GA-rich Low_complexity Low_complexity 3 77 0 2 1360 523 307 63 76 chr6 101674532 101674899 -47842138 - MLT1A LTR MaLR -12 362 1 2 1360 227 314 0 0 chr6 101675397 101675448 -47841589 - tRNA-Val-GTA tRNA tRNA 0 76 26 2 1360 333 0 0 0 chr6 101676691 101676728 -47840309 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1360 3477 156 92 8 chr6 101677202 101677866 -47839171 - RMER6D LTR ERVK 0 720 1 2 1360 3848 107 14 21 chr6 101677878 101678453 -47838584 + MT2B LTR ERVL 24 594 -7 2 1360 333 354 63 34 chr6 101678819 101679088 -47837949 - B4 SINE B4 -15 277 1 2 1360 340 358 129 29 chr6 101679116 101679286 -47837751 - B3 SINE B2 -28 188 2 2 1360 22 0 0 0 chr6 101679303 101679325 -47837712 + AT_rich Low_complexity Low_complexity 1 22 0 2 1360 260 289 57 19 chr6 101679473 101679579 -47837458 + MLT1B LTR MaLR 66 175 -215 2 1360 486 0 0 0 chr6 101680230 101680284 -47836753 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1360 207 211 19 0 chr6 101680612 101680664 -47836373 + GA-rich Low_complexity Low_complexity 2 54 0 2 1360 389 20 0 20 chr6 101680687 101680738 -47836299 + (TTTTC)n Simple_repeat Simple_repeat 2 51 0 2 1360 195 410 11 0 chr6 101680770 101680865 -47836172 - MIRb SINE MIR -126 142 47 2 1360 1713 178 64 81 chr6 101681290 101681712 -47835325 - MTD LTR MaLR 0 419 5 2 1360 201 290 135 31 chr6 101682796 101682892 -47834145 + L2b LINE L2 3257 3362 -13 2 1360 213 121 0 0 chr6 101682961 101682994 -47834043 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2 1360 463 220 13 60 chr6 101683481 101683631 -47833406 - Lx6 LINE L1 -27 7433 7291 2 1360 461 281 7 54 chr6 101684015 101684162 -47832875 - MTE2b LTR MaLR 0 379 240 2 1360 325 44 0 0 chr6 101684162 101684207 -47832830 - L1_Mm LINE L1 -3220 2663 2619 2 1360 4306 46 0 2 chr6 101684207 101684727 -47832310 + L1Md_F2 LINE L1 6052 6570 -12 2 1360 894 282 36 24 chr6 101684729 101684980 -47832057 - MTE2b LTR MaLR -125 254 1 2 1360 1831 172 70 11 chr6 101685266 101685624 -47831413 + ORR1C2 LTR MaLR 6 384 0 2 1360 479 17 0 16 chr6 101685735 101685796 -47831241 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1360 591 15 0 0 chr6 101685796 101685863 -47831174 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1360 1028 72 50 0 chr6 101686103 101686242 -47830795 - B1_Mm SINE Alu -1 146 1 2 1360 649 269 139 24 chr6 101686260 101686311 -47830726 - L1MA6 LINE L1 -10 6290 6235 2 1360 459 0 0 0 chr6 101686311 101686362 -47830675 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1360 649 269 139 24 chr6 101686362 101686683 -47830354 - L1MA6 LINE L1 -66 6234 5876 2 1360 393 237 215 0 chr6 101686702 101686888 -47830149 - L1MA6 LINE L1 -531 5769 5544 2 1360 345 343 83 31 chr6 101686966 101687412 -47829625 - MER20B DNA MER1_type -63 720 252 2 1360 2583 57 3 15 chr6 101687446 101687787 -47829250 - IAPLTR4 LTR ERVK -8 337 1 2 1360 858 20 0 0 chr6 101688923 101689023 -47828014 + (TCTCCC)n Simple_repeat Simple_repeat 3 102 0 2 1360 222 62 0 0 chr6 101689026 101689058 -47827979 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1360 345 200 0 14 chr6 101689068 101689080 -47827957 + ID_B1 SINE B4 70 136 -85 2 1360 400 71 0 0 chr6 101689080 101689136 -47827901 + B1_Mus1 SINE Alu 1 56 -92 2 1360 499 204 0 0 chr6 101689136 101689224 -47827813 - ORR1B2 LTR MaLR -279 88 1 2 1360 200 185 19 0 chr6 101689407 101689461 -47827576 + (ATG)n Simple_repeat Simple_repeat 1 55 0 2 1360 1194 107 0 0 chr6 101689892 101690069 -47826968 + (TTCTC)n Simple_repeat Simple_repeat 3 179 0 2 1360 443 63 0 16 chr6 101690069 101690133 -47826904 + (TCCCC)n Simple_repeat Simple_repeat 1 63 0 2 1360 540 0 0 0 chr6 101690133 101690193 -47826844 + (TTC)n Simple_repeat Simple_repeat 3 62 0 2 1360 183 239 0 0 chr6 101690194 101690240 -47826797 + CT-rich Low_complexity Low_complexity 1 46 0 2 1360 39056 9 0 6 chr6 101690353 101696544 -47820493 - L1Md_A LINE L1 -1 6581 431 2 1360 528 301 7 0 chr6 101696576 101696712 -47820325 + ID_B1 SINE B4 86 222 -2 2 1360 524 211 8 16 chr6 101696878 101696990 -47820047 - PB1D10 SINE Alu -17 131 18 2 1360 219 246 17 17 chr6 101697109 101697167 -47819870 + CT-rich Low_complexity Low_complexity 6 63 0 2 1360 462 36 0 0 chr6 101697171 101697227 -47819810 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1360 405 0 0 0 chr6 101699167 101699212 -47817825 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1360 1129 135 6 6 chr6 101699852 101700031 -47817006 - URR1B DNA MER1_type 0 225 47 2 1360 467 251 31 0 chr6 101700168 101700280 -47816757 + B1F SINE Alu 6 120 -29 2 1360 970 37 15 0 chr6 101700282 101700417 -47816620 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 2 1360 1936 195 72 5 chr6 101700570 101700822 -47816215 - MTD LTR MaLR -2 417 155 2 1360 2328 87 15 18 chr6 101700822 101701150 -47815887 + ORR1A2 LTR MaLR 1 327 0 2 1360 1936 195 72 5 chr6 101701150 101701288 -47815749 - MTD LTR MaLR -265 154 2 2 1360 216 0 0 0 chr6 101701383 101701407 -47815630 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1360 228 353 160 82 chr6 101701858 101702114 -47814923 - MLT1G3 LTR MaLR -317 278 3 2 1360 299 335 58 120 chr6 101702148 101702490 -47814547 - MLT1G3-int LTR MaLR -48 1441 1121 2 1360 390 260 3 2 chr6 101702635 101702724 -47814313 + B3 SINE B2 26 115 -83 2 1360 24 32 0 0 chr6 101702851 101702882 -47814155 + AT_rich Low_complexity Low_complexity 1 31 0 2 1360 1110 83 0 14 chr6 101703630 101703777 -47813260 + B1_Mm SINE Alu 2 146 -1 2 1360 264 338 13 0 chr6 101704236 101704313 -47812724 + ID4_ SINE ID 1 78 -5 2 1360 2587 62 28 8 chr6 101704485 101704841 -47812196 + L1Md_F2 LINE L1 6220 6582 0 2 1360 233 310 14 0 chr6 101705234 101705305 -47811732 + B1F SINE Alu 63 134 -15 2 1360 255 31 0 0 chr6 101705317 101705349 -47811688 + (GA)n Simple_repeat Simple_repeat 1 32 0 2 1360 36639 44 13 16 chr6 101705364 101711197 -47805840 - L1Md_T LINE L1 0 6585 607 2 1360 226 316 59 59 chr6 101711197 101711298 -47805739 - RLTR45 LTR ERVK -378 104 4 2 21 36639 44 13 16 chr6 101711298 101711888 -47805149 - L1Md_T LINE L1 0 606 1 2 1361 1098 96 0 0 chr6 101712476 101712622 -47804415 + B1_Mus2 SINE Alu 2 147 0 2 1361 614 259 84 54 chr6 101712687 101712992 -47804045 - RLTR26 LTR ERVK -313 329 1 2 1361 556 271 50 23 chr6 101714642 101714861 -47802176 - MER2 DNA MER2_type -104 241 17 2 1361 1004 349 45 8 chr6 101716037 101716395 -47800642 + MTEa LTR MaLR 1 371 -8 2 1361 28 48 0 0 chr6 101716819 101716861 -47800176 + AT_rich Low_complexity Low_complexity 1 42 0 2 1361 407 288 101 43 chr6 101717094 101717270 -47799767 - LTR87 LTR ERVL? -20 604 425 2 1361 1057 106 0 0 chr6 101717270 101717411 -47799626 + B1_Mus2 SINE Alu 1 141 -6 2 1361 888 10 0 0 chr6 101717413 101717514 -47799523 + (GAA)n Simple_repeat Simple_repeat 3 103 0 2 1361 407 288 101 43 chr6 101717514 101717541 -47799496 - LTR87 LTR ERVL? -200 424 389 2 1361 421 379 79 24 chr6 101717571 101717825 -47799212 - LTR87 LTR ERVL? -334 290 23 2 1361 345 47 0 0 chr6 101718827 101718870 -47798167 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 2 1361 1184 228 72 44 chr6 101719143 101719505 -47797532 - ORR1D1 LTR MaLR 0 374 3 2 1361 275 265 115 39 chr6 101719680 101719888 -47797149 + L1MA5 LINE L1 6071 6294 -6 2 1361 417 271 27 54 chr6 101719914 101720062 -47796975 + RMER15 LTR ERVL 4 147 -428 2 1361 551 350 88 40 chr6 101720076 101720350 -47796687 + RMER15 LTR ERVL 287 573 -2 2 1361 1871 219 39 0 chr6 101721557 101721941 -47795096 + MTD LTR MaLR 21 419 0 2 1361 28 48 0 0 chr6 101722255 101722297 -47794740 + AT_rich Low_complexity Low_complexity 1 42 0 2 1361 609 268 81 58 chr6 101722334 101722508 -47794529 - B3A SINE B2 -20 178 1 2 1361 288 70 0 0 chr6 101722979 101723022 -47794015 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1361 984 67 14 43 chr6 101723024 101723165 -47793872 - B1_Mus1 SINE Alu 0 148 12 2 1361 246 217 22 0 chr6 101723758 101723804 -47793233 + MIRb SINE MIR 61 107 -161 2 1361 191 57 0 79 chr6 101723806 101723844 -47793193 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1361 273 260 0 25 chr6 101724457 101724536 -47792501 + MLT1K LTR MaLR 493 569 -26 3 1361 254 277 12 0 chr6 101725328 101725411 -47791626 - Charlie8 DNA MER1_type -2268 160 77 3 1361 271 355 64 18 chr6 101725406 101725515 -47791522 - PB1D10 SINE Alu -3 114 1 3 1361 240 352 27 45 chr6 101725429 101725539 -47791498 - ID_B1 SINE B4 -52 172 65 3 1361 701 289 56 5 chr6 101725617 101725812 -47791225 + B3 SINE B2 1 205 -11 3 1361 23 33 0 0 chr6 101725888 101725918 -47791119 + AT_rich Low_complexity Low_complexity 1 30 0 3 1361 24 32 0 0 chr6 101725958 101725989 -47791048 + AT_rich Low_complexity Low_complexity 1 31 0 3 1361 866 250 154 12 chr6 101726472 101726804 -47790233 + MTE2b LTR MaLR 1 379 0 3 1361 274 343 10 19 chr6 101726839 101726943 -47790094 - PB1D10 SINE Alu -14 103 1 3 1361 419 264 53 26 chr6 101726971 101727084 -47789953 - PB1D9 SINE Alu -2 118 3 3 1361 308 349 0 9 chr6 101727640 101727750 -47789287 - L1MB8 LINE L1 -190 5988 5880 3 1361 276 53 0 0 chr6 101727812 101727850 -47789187 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 3 1361 1140 59 0 0 chr6 101727850 101727985 -47789052 - B1_Mus1 SINE Alu -12 136 2 3 1361 387 294 111 52 chr6 101728013 101728185 -47788852 - B3A SINE B2 -16 182 1 3 1361 547 276 169 3 chr6 101728228 101728548 -47788489 - L1MB8 LINE L1 -397 5781 5409 3 1361 272 296 43 113 chr6 101729141 101729282 -47787755 + MER5A DNA MER1_type 53 183 -6 3 1361 498 17 0 0 chr6 101729645 101729704 -47787333 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1361 210 71 0 0 chr6 101729713 101729741 -47787296 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1361 1079 92 0 7 chr6 101730579 101730722 -47786315 + B1_Mus1 SINE Alu 2 143 -5 3 1361 226 47 22 44 chr6 101730732 101730777 -47786260 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 3 1361 960 266 119 20 chr6 101731199 101731538 -47785499 + MTD LTR MaLR 52 398 -21 3 1361 319 319 38 38 chr6 101731883 101732083 -47784954 + Lx9 LINE L1 7169 7416 -228 3 1361 594 28 0 0 chr6 101732086 101732158 -47784879 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 1361 783 269 86 9 chr6 101732205 101732415 -47784622 - B4A SINE B4 -20 272 47 3 1361 373 323 174 42 chr6 101732441 101732774 -47784263 + MTEb LTR MaLR 3 379 0 3 1361 35289 61 3 2 chr6 101732918 101739085 -47777952 - L1Md_F3 LINE L1 -14 6570 224 3 1361 462 36 0 0 chr6 101739308 101739364 -47777673 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1361 308 258 161 28 chr6 101739399 101739654 -47777383 + L1MB2 LINE L1 5860 6148 -23 3 1361 449 333 122 38 chr6 101740311 101740704 -47776333 - L1M5 LINE L1 -403 5721 5296 3 1361 26 64 0 0 chr6 101741185 101741232 -47775805 + AT_rich Low_complexity Low_complexity 1 47 0 3 1361 1645 123 7 7 chr6 101741232 101741502 -47775535 - L1_Mus4 LINE L1 -28 6608 6339 3 1361 658 278 183 4 chr6 101741503 101741738 -47775299 + MTD LTR MaLR 129 405 -14 3 1361 210 37 0 0 chr6 101741738 101741765 -47775272 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1361 207 156 0 0 chr6 101741846 101741878 -47775159 + (CTG)n Simple_repeat Simple_repeat 1 32 0 3 1361 1478 191 61 54 chr6 101742288 101742686 -47774351 + RMER16 LTR ERVK 1 533 0 3 1361 202 244 82 96 chr6 101743226 101743373 -47773664 + MIRb SINE MIR 48 193 -83 3 1361 235 271 60 49 chr6 101744901 101745009 -47772028 - MIRc SINE MIR -46 216 113 3 1361 333 0 0 0 chr6 101745236 101745273 -47771764 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1361 473 321 29 7 chr6 101746832 101746970 -47770067 + RSINE1 SINE B4 3 143 -22 3 1361 4053 253 64 39 chr6 101748001 101749325 -47767712 - Lx9 LINE L1 0 7644 6297 3 1361 429 15 30 30 chr6 101749325 101749392 -47767645 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 3 1361 1110 70 0 0 chr6 101749392 101749529 -47767508 - B1_Mus2 SINE Alu -4 143 7 3 1361 4053 253 64 39 chr6 101749529 101749689 -47767348 - Lx9 LINE L1 -1348 6296 6128 3 1361 249 33 0 0 chr6 101750074 101750104 -47766933 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1361 216 0 0 0 chr6 101750282 101750306 -47766731 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1361 950 77 31 0 chr6 101750306 101750436 -47766601 - B1_Mus2 SINE Alu -2 145 12 3 1361 464 101 0 11 chr6 101750854 101750944 -47766093 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 3 1361 4044 184 30 13 chr6 101750976 101751804 -47765233 + Lx5 LINE L1 5745 6586 -464 3 1361 853 307 178 25 chr6 101751953 101752561 -47764476 - Charlie25 DNA MER1_type -1127 1397 697 3 1361 28 0 0 0 chr6 101752660 101752688 -47764349 + AT_rich Low_complexity Low_complexity 1 28 0 3 1361 2627 46 0 0 chr6 101752707 101753033 -47764004 - IAPEY2_LTR LTR ERVK 0 357 32 3 1361 444 294 15 5 chr6 101753045 101753243 -47763794 - Lx4B LINE L1 -39 7019 6729 3 1361 428 277 97 30 chr6 101753317 101753451 -47763586 - ID_B1 SINE B4 0 224 82 3 1361 338 213 122 8 chr6 101753508 101753631 -47763406 - Charlie25 DNA MER1_type -2064 460 324 3 1361 299 381 29 42 chr6 101753929 101754167 -47762870 + Tigger5 DNA MER2_type 2 236 -2170 3 1361 319 212 57 91 chr6 101754408 101754496 -47762541 - B1_Mur1 SINE Alu 0 149 65 3 1361 712 264 60 15 chr6 101755208 101755408 -47761629 - B3 SINE B2 -5 211 3 3 1361 2511 171 41 51 chr6 101756207 101756774 -47760263 + RLTR31_Mm LTR ERVK 1 561 0 3 1361 650 220 0 6 chr6 101756824 101757002 -47760035 + (TA)n Simple_repeat Simple_repeat 2 178 0 3 1361 375 23 0 0 chr6 101757799 101757843 -47759194 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 3 1361 556 253 0 7 chr6 101757848 101757995 -47759042 - Lx6 LINE L1 -14 7446 7301 3 1361 971 247 138 7 chr6 101757999 101758288 -47758749 + Lx6 LINE L1 6868 7189 -271 3 1361 2026 24 48 0 chr6 101758288 101758537 -47758500 - L1Md_F3 LINE L1 0 6584 6324 3 1361 971 247 133 6 chr6 101758537 101758613 -47758424 + Lx6 LINE L1 7190 7282 -178 3 1361 29 0 0 0 chr6 101758620 101758649 -47758388 + AT_rich Low_complexity Low_complexity 1 29 0 3 1361 979 25 0 0 chr6 101758649 101758769 -47758268 - L1Md_F3 LINE L1 -206 6378 6259 3 1361 180 281 45 103 chr6 101759480 101759635 -47757402 + L3 LINE CR1 863 1008 -3481 3 1361 233 310 14 0 chr6 101760703 101760774 -47756263 + MLT1I LTR MaLR 340 411 0 3 1361 630 293 5 60 chr6 101760822 101761007 -47756030 + B3A SINE B2 24 198 0 3 1361 293 310 60 19 chr6 101761808 101761926 -47755111 + B1_Mus2 SINE Alu 2 141 -8 3 1361 234 170 0 0 chr6 101761926 101761973 -47755064 + (CCCA)n Simple_repeat Simple_repeat 2 48 0 3 1361 637 283 82 35 chr6 101762020 101762423 -47754614 + L1M3 LINE L1 4038 4459 -1681 3 1361 306 200 86 0 chr6 101762416 101762486 -47754551 + Lx9 LINE L1 6925 7000 -644 3 1361 315 0 0 0 chr6 101762486 101762521 -47754516 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1361 5382 184 31 23 chr6 101762583 101764409 -47752628 - Lx2 LINE L1 -253 6744 4903 3 1361 4193 118 15 0 chr6 101764411 101765087 -47751950 - Lx2 LINE L1 -619 6378 5693 3 1361 3397 138 71 10 chr6 101765087 101765675 -47751362 + Lx2 LINE L1 6373 6996 -1 3 1361 346 270 60 15 chr6 101765675 101765874 -47751163 - L1M2 LINE L1 -827 5473 5266 3 1361 560 212 25 77 chr6 101765948 101766203 -47750834 + L1_Mur1 LINE L1 207 501 -6481 3 1361 1712 191 32 30 chr6 101766203 101766604 -47750433 - RLTR9D LTR ERVK -24 379 1 3 1361 7633 115 31 31 chr6 101766604 101767849 -47749188 + Lx3A LINE L1 5737 6981 0 3 1361 680 139 16 0 chr6 101767876 101767998 -47749039 - Lx3A LINE L1 -815 6166 6043 3 1361 228 86 0 0 chr6 101767999 101768034 -47749003 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1361 753 294 57 25 chr6 101768048 101768453 -47748584 + Lx9 LINE L1 7148 7565 -79 3 1361 287 279 134 60 chr6 101768603 101768752 -47748285 + MIRb SINE MIR 84 243 -25 3 1361 38814 13 0 6 chr6 101769281 101775465 -47741572 - L1Md_A LINE L1 0 6582 440 3 1361 501 17 0 0 chr6 101775918 101775976 -47741061 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1361 492 306 69 64 chr6 101776527 101776880 -47740157 + MTEa LTR MaLR 8 379 0 3 1361 290 386 50 33 chr6 101777325 101777507 -47739530 - MIRb SINE MIR -58 210 26 3 1361 467 399 48 44 chr6 101778269 101778725 -47738312 + L1MEc LINE L1 45 502 -5898 3 1361 366 255 144 50 chr6 101778755 101779159 -47737878 + L1MEc LINE L1 547 988 -5412 3 1361 210 353 49 42 chr6 101779182 101779198 -47737839 + ID_B1 SINE B4 78 219 -4 3 1361 360 320 64 0 chr6 101779198 101779323 -47737714 + B1F SINE Alu 12 144 -5 3 1361 265 263 52 0 chr6 101779507 101779643 -47737394 + L1MEc LINE L1 4966 5117 -1202 3 1361 762 304 24 4 chr6 101779904 101780152 -47736885 - MER2 DNA MER2_type -6 339 87 3 1361 428 315 69 5 chr6 101780243 101780447 -47736590 + L1MEc LINE L1 5452 5668 -684 3 1361 940 269 18 55 chr6 101780476 101780803 -47736234 + Lx8 LINE L1 6572 6886 -587 3 1361 267 31 0 0 chr6 101780974 101781006 -47736031 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1361 180 0 0 0 chr6 101781079 101781099 -47735938 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1361 311 319 226 35 chr6 101781113 101781370 -47735667 + L1MEc LINE L1 5710 6015 -337 3 1361 260 274 0 0 chr6 101781426 101781499 -47735538 + L1MB3 LINE L1 5667 5739 -441 3 1361 794 106 8 0 chr6 101781532 101781664 -47735373 + (CA)n Simple_repeat Simple_repeat 2 134 0 3 1361 1023 237 0 61 chr6 101781733 101781920 -47735117 - B3 SINE B2 0 216 36 3 1361 3853 166 50 11 chr6 101781920 101782228 -47734809 + RMER6A LTR ERVK 1 322 -434 3 1361 567 0 0 0 chr6 101782228 101782291 -47734746 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1361 3853 166 50 11 chr6 101782291 101782709 -47734328 + RMER6A LTR ERVK 323 755 -1 3 1361 1023 237 0 61 chr6 101782709 101782750 -47734287 - B3 SINE B2 -181 35 2 3 1361 604 273 70 17 chr6 101782755 101783057 -47733980 + L1MB3 LINE L1 5850 6167 -16 3 1361 408 284 67 43 chr6 101783168 101783422 -47733615 - L1MA6 LINE L1 -24 6276 6017 3 1361 475 292 104 83 chr6 101783677 101784795 -47732242 + L1MB8 LINE L1 4996 6137 -41 3 1361 374 303 121 0 chr6 101784796 101784928 -47732109 + RSINE1 SINE B4 3 150 -15 3 1361 387 0 0 0 chr6 101785250 101785293 -47731744 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1361 184 321 0 36 chr6 101786296 101786351 -47730686 + L2b LINE L2 3302 3354 -21 3 1361 776 302 173 41 chr6 101786558 101786975 -47730062 - Tigger7 DNA MER2_type -2019 472 1 4 1361 1238 155 32 23 chr6 101787031 101787249 -47729788 - URR1B DNA MER1_type -4 221 2 4 1361 282 87 0 0 chr6 101788075 101788121 -47728916 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1361 4516 52 9 7 chr6 101788846 101789405 -47727632 - LTRIS2 LTR ERV1 0 564 5 4 1361 950 327 63 32 chr6 101789917 101790359 -47726678 + MLT1C LTR MaLR 3 458 -9 4 1361 381 367 51 33 chr6 101791085 101791358 -47725679 - L2a LINE L2 -7 3419 3142 4 1361 194 259 34 17 chr6 101791391 101791450 -47725587 + MIRc SINE MIR 9 68 -200 4 1361 240 308 105 64 chr6 101791994 101792338 -47724699 + L2 LINE L2 2387 2744 -675 4 1361 500 301 71 10 chr6 101792390 101792588 -47724449 + MER89 LTR ERV1 350 559 0 4 1361 194 313 30 0 chr6 101793911 101793978 -47723059 - MIRc SINE MIR -3 265 197 4 1361 350 295 19 19 chr6 101794170 101794277 -47722760 + PB1D10 SINE Alu 2 108 -9 4 1361 1734 217 156 35 chr6 101794299 101794347 -47722690 + Lx9 LINE L1 7007 7054 -590 4 1361 1561 53 162 0 chr6 101794347 101794575 -47722462 + Lx3_Mus LINE L1 6737 7001 -8 4 1361 1734 217 156 35 chr6 101794575 101795095 -47721942 + Lx9 LINE L1 7055 7644 0 4 1361 1226 219 16 38 chr6 101795418 101795792 -47721245 + RMER17B LTR ERVK 537 958 0 4 1361 506 279 135 11 chr6 101796046 101796231 -47720806 + B3 SINE B2 1 208 -8 4 1361 834 225 94 5 chr6 101796268 101796460 -47720577 + B3 SINE B2 8 216 0 4 1361 256 369 45 30 chr6 101796623 101796757 -47720280 - MLT1H2 LTR MaLR -290 199 64 4 1361 394 311 28 37 chr6 101796901 101797115 -47719922 - MER34A1 LTR ERV1 -74 513 302 4 1361 1283 244 50 98 chr6 101798839 101799238 -47717799 + MTD LTR MaLR 1 380 -39 4 1361 441 0 0 0 chr6 101799759 101799808 -47717229 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1361 314 107 18 0 chr6 101800499 101800555 -47716482 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1361 508 312 82 74 chr6 101800636 101800906 -47716131 + B4A SINE B4 3 274 -18 4 1361 396 0 0 0 chr6 101800928 101800972 -47716065 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1361 432 219 24 0 chr6 101801187 101801269 -47715768 + ID_B1 SINE B4 121 204 -20 4 1361 387 0 0 0 chr6 101801353 101801396 -47715641 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1361 2651 103 41 8 chr6 101801532 101801924 -47715113 + Lx3A LINE L1 6573 6977 -4 4 1361 33 90 0 0 chr6 101801926 101802015 -47715022 + AT_rich Low_complexity Low_complexity 1 89 0 4 1361 575 248 110 23 chr6 101802065 101802329 -47714708 - Kanga2_a DNA Tc2 -193 695 409 4 1361 245 269 192 0 chr6 101802388 101802466 -47714571 + B3A SINE B2 1 93 -105 4 1361 474 18 0 0 chr6 101802515 101802570 -47714467 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1361 34 42 0 0 chr6 101802571 101802619 -47714418 + AT_rich Low_complexity Low_complexity 1 48 0 4 1361 621 328 79 94 chr6 101802810 101803374 -47713663 + MLT1E2 LTR MaLR 1 489 -138 4 1361 981 105 0 0 chr6 101804761 101804932 -47712105 + (TCC)n Simple_repeat Simple_repeat 2 172 0 4 1361 307 370 43 36 chr6 101806231 101806371 -47710666 - B4 SINE B4 -89 203 63 4 1361 302 354 89 6 chr6 101806762 101806941 -47710096 + MER58A DNA MER1_type 9 202 -22 4 1361 361 367 40 0 chr6 101807538 101807688 -47709349 - MTEa LTR MaLR -223 156 1 4 1361 183 272 228 25 chr6 101807782 101807944 -47709093 - L2a LINE L2 -1 3425 3231 4 1361 280 349 108 45 chr6 101807944 101808343 -47708694 - L2a LINE L2 -3 3423 3000 4 1361 226 285 54 40 chr6 101808685 101808825 -47708212 + MIRc SINE MIR 82 232 -36 4 1361 314 367 122 24 chr6 101808869 101809204 -47707833 - L3 LINE CR1 -112 4377 4010 4 1361 573 319 0 14 chr6 101809755 101809898 -47707139 + RSINE1 SINE B4 3 143 -22 4 1361 477 206 0 0 chr6 101809901 101810003 -47707034 + (TATG)n Simple_repeat Simple_repeat 1 102 0 4 1361 216 204 0 0 chr6 101810030 101810074 -47706963 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1361 413 50 17 0 chr6 101810080 101810140 -47706897 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 4 1361 301 256 22 79 chr6 101810636 101810725 -47706312 + MLT1E3 LTR MaLR 232 315 -129 4 1361 1426 298 67 11 chr6 101812282 101812832 -47704205 - Lx8 LINE L1 -2 7471 6891 4 1361 318 385 29 6 chr6 101813076 101813251 -47703786 + MLT1E3 LTR MaLR 446 624 0 4 1361 568 288 46 29 chr6 101813474 101813649 -47703388 - B4A SINE B4 -25 267 90 4 1361 2748 52 6 14 chr6 101814514 101814862 -47702175 + IAPLTR4 LTR ERVK 1 345 0 4 1361 1606 215 48 8 chr6 101815355 101815707 -47701330 + ORR1D1 LTR MaLR 1 366 -8 4 1361 204 125 0 0 chr6 101815989 101816021 -47701016 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1361 481 69 0 0 chr6 101816041 101816113 -47700924 + Lx2A1 LINE L1 6937 7008 0 4 1361 300 341 37 22 chr6 101817785 101817920 -47699117 - LTR33C LTR ERVL -487 142 6 4 1361 1551 229 85 50 chr6 101818536 101818585 -47698452 - MTC LTR MaLR -8 413 370 4 1361 2678 34 9 27 chr6 101818585 101818918 -47698119 + IAPLTR2b LTR ERVK 1 327 0 4 1361 1551 229 85 50 chr6 101818918 101818962 -47698075 - MTC LTR MaLR -52 369 328 4 1361 2222 79 139 12 chr6 101818962 101819308 -47697729 + RLTR10 LTR ERVK 1 390 0 4 1361 1551 229 85 50 chr6 101819308 101819612 -47697425 - MTC LTR MaLR -94 327 3 4 1361 1330 192 27 48 chr6 101819612 101819946 -47697091 - MTC-int LTR MaLR 0 1258 932 4 1361 2089 236 52 25 chr6 101819945 101820459 -47696578 - MTC-int LTR MaLR -729 529 2 4 1361 1538 199 79 44 chr6 101820461 101820867 -47696170 - MTC LTR MaLR -1 420 1 4 1361 571 244 250 0 chr6 101821084 101821244 -47695793 + B3 SINE B2 2 201 -15 4 1361 469 0 33 0 chr6 101821244 101821305 -47695732 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 4 1361 221 0 0 33 chr6 101821690 101821720 -47695317 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1361 791 206 0 0 chr6 101821729 101821870 -47695167 - B1_Mur3 SINE Alu -8 141 1 4 1361 212 146 0 47 chr6 101822674 101822717 -47694320 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 4 1361 791 266 87 32 chr6 101822776 101823084 -47693953 - ORR1D2 LTR MaLR 0 370 21 4 1361 195 42 0 0 chr6 101823084 101823108 -47693929 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1361 664 262 67 45 chr6 101823108 101823127 -47693910 - ORR1D2 LTR MaLR -354 20 2 4 1361 283 250 66 19 chr6 101825072 101825178 -47691859 + MLT1H LTR MaLR 62 172 -377 4 1361 207 326 10 40 chr6 101826498 101826597 -47690440 + MIR SINE MIR 162 257 -5 4 1361 577 302 57 9 chr6 101827159 101827386 -47689651 + LTR37A LTR ERV1 78 315 -111 4 1361 655 206 14 5 chr6 101827513 101827729 -47689308 + GA-rich Low_complexity Low_complexity 1 218 0 4 1361 408 347 14 0 chr6 101828056 101828203 -47688834 - MLT1B LTR MaLR -214 176 28 4 1361 1949 251 11 43 chr6 101829071 101829608 -47687429 + RMER5 LTR ERV1 15 534 0 4 1361 594 0 0 0 chr6 101830328 101830394 -47686643 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1361 295 202 10 10 chr6 101830684 101830784 -47686253 + GA-rich Low_complexity Low_complexity 2 101 0 4 1361 591 60 0 0 chr6 101830807 101830891 -47686146 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1361 585 0 0 0 chr6 101830891 101830955 -47686082 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1361 185 264 88 100 chr6 101831239 101831319 -47685718 - MER5B DNA MER1_type -42 136 58 4 1361 894 328 48 6 chr6 101831588 101831904 -47685133 + MER2 DNA MER2_type 6 334 -11 4 1361 408 20 0 0 chr6 101832036 101832085 -47684952 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1361 251 125 42 0 chr6 101832414 101832462 -47684575 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 4 1361 297 0 0 0 chr6 101832564 101832597 -47684440 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 1361 609 317 10 64 chr6 101834585 101834787 -47682250 - B3A SINE B2 -3 195 5 4 1361 2805 198 80 37 chr6 101834862 101835611 -47681426 - Lx7 LINE L1 -2 7694 6904 4 1361 2897 74 42 5 chr6 101835611 101836017 -47681020 + BGLII LTR ERVK 1 421 0 4 1361 2805 198 80 37 chr6 101836017 101836096 -47680941 - Lx7 LINE L1 -793 6903 6831 4 1361 570 230 36 73 chr6 101836373 101836565 -47680472 + RLTR23 LTR ERV1 244 428 -2 4 1361 750 242 11 0 chr6 101836567 101836745 -47680292 - Lx7 LINE L1 -862 6834 6655 4 1361 3560 145 18 30 chr6 101837170 101838086 -47678951 - Lx2 LINE L1 -824 6173 5267 4 1361 1181 117 37 0 chr6 101838086 101838274 -47678763 - B2_Mm2 SINE B2 0 195 1 4 1361 3560 177 17 67 chr6 101838274 101838468 -47678569 - Lx2 LINE L1 -611 5266 5096 4 1361 3252 130 24 13 chr6 101838464 101839009 -47678028 + Lx2 LINE L1 6151 6701 -296 4 1361 1659 175 71 140 chr6 101839009 101839214 -47677823 - RLTR41 LTR ERV1 0 446 271 4 1361 1094 104 6 0 chr6 101839214 101839378 -47677659 - L1_Mus2 LINE L1 0 6566 6402 4 1361 1659 175 71 140 chr6 101839378 101839651 -47677386 - RLTR41 LTR ERV1 -176 270 1 4 1361 1790 126 17 23 chr6 101839651 101839951 -47677086 + Lx2 LINE L1 6698 6995 -2 4 1361 444 62 0 0 chr6 101839982 101840046 -47676991 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 4 1361 273 368 64 6 chr6 101840465 101840621 -47676416 - MIRb SINE MIR -100 168 4 4 1361 2197 209 58 69 chr6 101841400 101841939 -47675098 - RMER15 LTR ERVL 0 575 43 4 1361 278 203 0 17 chr6 101841993 101842053 -47674984 - RMER15 LTR ERVL -516 59 1 4 1361 180 355 37 25 chr6 101842568 101842649 -47674388 - MIRb SINE MIR -180 88 7 4 1362 294 342 112 35 chr6 101843036 101843233 -47673804 + MLT1C LTR MaLR 238 449 -18 4 1362 577 35 622 9 chr6 101843608 101843719 -47673318 - L1_Mus3 LINE L1 -611 6027 5849 4 1362 4454 84 15 3 chr6 101843719 101844329 -47672708 + L1_Mus3 LINE L1 6016 6632 -6 4 1362 1021 86 18 6 chr6 101844447 101844610 -47672427 - L1_Mus3 LINE L1 -10 6628 6464 4 1362 395 270 146 55 chr6 101844659 101845011 -47672026 - LTR48 LTR ERV1 -343 444 6 4 1362 215 61 0 29 chr6 101845485 101845519 -47671518 + (TAA)n Simple_repeat Simple_repeat 3 35 0 4 1362 3846 137 35 8 chr6 101845556 101846181 -47670856 - RLTR26 LTR ERVK 0 642 1 4 1362 474 269 8 92 chr6 101846583 101846714 -47670323 + B3A SINE B2 57 176 -22 4 1362 23 0 0 0 chr6 101847408 101847431 -47669606 + AT_rich Low_complexity Low_complexity 1 23 0 4 1362 180 0 0 0 chr6 101847842 101847862 -47669175 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1362 587 291 78 71 chr6 101848047 101848452 -47668585 + RLTR16 LTR ERVK 7 426 -142 4 1362 236 301 117 39 chr6 101849106 101849234 -47667803 + MLT1A1 LTR MaLR 271 408 0 5 1362 2206 201 12 50 chr6 101849309 101849732 -47667305 + MTC LTR MaLR 1 407 -14 5 1362 615 14 0 0 chr6 101849922 101849994 -47667043 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1362 385 330 62 62 chr6 101850316 101850357 -47666680 + B3A SINE B2 2 42 -156 5 1362 1158 70 0 0 chr6 101850357 101850499 -47666538 + B1_Mus1 SINE Alu 1 142 -6 5 1362 423 0 0 0 chr6 101850500 101850547 -47666490 + (TAA)n Simple_repeat Simple_repeat 1 47 0 5 1362 385 330 62 62 chr6 101850547 101850697 -47666340 + B3A SINE B2 43 195 -3 5 1362 1139 219 12 4 chr6 101851212 101851460 -47665577 + Lx6 LINE L1 7202 7451 -9 5 1362 423 0 0 0 chr6 101851511 101851558 -47665479 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1362 723 307 46 38 chr6 101851609 101851870 -47665167 - MTEb LTR MaLR -8 371 109 5 1362 779 278 132 28 chr6 101851828 101852124 -47664913 + MTE2b LTR MaLR 45 371 -8 5 1362 283 315 8 92 chr6 101852144 101852263 -47664774 + MER63B DNA AcHobo 291 399 -37 5 1362 393 22 0 0 chr6 101853246 101853292 -47663745 + (CCTA)n Simple_repeat Simple_repeat 1 46 0 5 1362 405 0 0 0 chr6 101854107 101854152 -47662885 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1362 347 294 11 11 chr6 101854404 101854497 -47662540 - Charlie22a DNA MER1_type 0 491 399 5 1362 297 0 0 0 chr6 101854598 101854631 -47662406 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1362 207 0 0 0 chr6 101856486 101856509 -47660528 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1362 646 211 20 47 chr6 101856681 101856830 -47660207 + B1_Mur2 SINE Alu 5 149 0 5 1362 1867 111 7 4 chr6 101857327 101857599 -47659438 + L1_Mus3 LINE L1 6359 6631 -7 5 1362 628 32 21 0 chr6 101858103 101858197 -47658840 + L1Md_F2 LINE L1 6486 6581 -1 5 1362 24 0 0 0 chr6 101858440 101858464 -47658573 + AT_rich Low_complexity Low_complexity 1 24 0 5 1362 390 269 101 28 chr6 101859480 101859798 -47657239 - L1M4 LINE L1 -923 5223 4883 5 1362 453 301 91 17 chr6 101860747 101861034 -47656003 + L1MA6 LINE L1 5698 6005 -295 5 1362 852 280 9 3 chr6 101861073 101861363 -47655674 - Lx5 LINE L1 -748 6712 6203 5 1362 429 66 0 0 chr6 101861378 101861439 -47655598 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 5 1362 194 0 0 37 chr6 101861446 101861473 -47655564 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 5 1362 866 89 89 0 chr6 101861475 101861599 -47655438 - B1_Mus1 SINE Alu -12 136 2 5 1362 1704 233 183 41 chr6 101861603 101862095 -47654942 + Lx6 LINE L1 6760 7326 -134 5 1362 248 53 26 0 chr6 101862095 101862133 -47654904 + (TTG)n Simple_repeat Simple_repeat 2 40 0 5 1362 1704 233 183 41 chr6 101862133 101862230 -47654807 + Lx6 LINE L1 7327 7433 -27 5 1362 234 248 40 40 chr6 101862318 101862444 -47654593 + L1MA6 LINE L1 6152 6277 -23 5 1362 641 233 26 39 chr6 101862603 101862711 -47654326 - Lx9 LINE L1 -41 7603 7502 5 1362 495 0 0 0 chr6 101862711 101862766 -47654271 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1362 641 233 26 39 chr6 101862766 101862889 -47654148 - Lx9 LINE L1 -143 7501 7375 5 1362 784 324 142 0 chr6 101863086 101863220 -47653817 + MTEa LTR MaLR 21 174 -205 5 1362 612 27 0 0 chr6 101863220 101863294 -47653743 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 1362 784 324 142 0 chr6 101863294 101863455 -47653582 + MTEa LTR MaLR 175 357 -22 5 1362 357 24 0 0 chr6 101863458 101863500 -47653537 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 1362 201 361 68 20 chr6 101864327 101864474 -47652563 - MIR SINE MIR -55 207 54 5 1362 274 195 51 13 chr6 101864550 101864628 -47652409 + L1MB8 LINE L1 5755 5835 -343 5 1362 367 325 50 68 chr6 101864681 101864902 -47652135 + L1MB8 LINE L1 5941 6157 -21 5 1362 687 302 31 11 chr6 101865507 101865698 -47651339 - B4 SINE B4 -28 264 70 5 1362 231 281 59 35 chr6 101865647 101865732 -47651305 - MT2B2 LTR ERVL -291 293 207 5 1362 298 348 43 0 chr6 101866487 101866602 -47650435 - MLT1B LTR MaLR -3 464 345 5 1362 350 283 35 17 chr6 101866653 101866768 -47650269 - MLT1B LTR MaLR -132 258 142 5 1362 415 132 0 0 chr6 101867035 101867103 -47649934 + Lx2 LINE L1 6185 6252 -748 5 1362 3160 116 71 12 chr6 101867109 101867616 -47649421 + Lx2 LINE L1 6461 6997 0 5 1362 483 349 65 18 chr6 101867860 101868137 -47648900 + B4 SINE B4 2 291 -1 5 1362 453 97 0 0 chr6 101868140 101868212 -47648825 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1362 273 244 110 31 chr6 101868271 101868398 -47648639 + L1MD3 LINE L1 7859 7995 0 5 1362 434 305 77 71 chr6 101868401 101868499 -47648538 + L1MB7 LINE L1 5334 5419 -940 5 1362 1345 68 0 0 chr6 101868499 101868675 -47648362 + L1_Mus1 LINE L1 6391 6566 -1 5 1362 583 313 122 34 chr6 101868675 101869336 -47647701 + L1MB7 LINE L1 5420 6175 -9 5 1362 207 0 0 0 chr6 101870186 101870209 -47646828 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1362 1322 224 80 6 chr6 101870337 101870661 -47646376 - Lx5 LINE L1 -12 7038 6691 5 1362 1803 191 3 26 chr6 101870660 101871010 -47646027 + Lx5 LINE L1 6343 6684 -366 5 1362 589 286 113 41 chr6 101871745 101872011 -47645026 + B4 SINE B4 1 285 -7 5 1362 238 294 49 0 chr6 101872300 101872402 -47644635 - L1MA7 LINE L1 -21 6270 6164 5 1362 231 326 22 0 chr6 101872423 101872512 -47644525 - L1MA7 LINE L1 -289 6023 5933 5 1362 247 312 72 10 chr6 101873080 101873177 -47643860 + MamRep1161 DNA TcMar 279 381 -576 5 1362 363 247 0 0 chr6 101873476 101873549 -47643488 + MTE2a LTR MaLR 1 73 -306 5 1362 478 231 29 15 chr6 101873544 101873680 -47643357 - MTE2b-int LTR MaLR -1441 139 2 5 1362 859 264 201 9 chr6 101873684 101874002 -47643035 - MTE2b LTR MaLR 0 379 1 5 1362 360 148 79 11 chr6 101874684 101874773 -47642264 - Lx3_Mus LINE L1 0 7009 6915 5 1362 23 0 0 0 chr6 101874951 101874974 -47642063 + AT_rich Low_complexity Low_complexity 1 23 0 5 1362 234 363 66 0 chr6 101875228 101875319 -47641718 + MLT1G LTR MaLR 66 162 -429 5 1362 1187 60 120 0 chr6 101875875 101876042 -47640995 + L1_Mus1 LINE L1 6368 6554 -13 5 1362 22 0 0 0 chr6 101876380 101876402 -47640635 + AT_rich Low_complexity Low_complexity 1 22 0 5 1362 345 274 97 52 chr6 101876671 101876825 -47640212 - RSINE1 SINE B4 -3 162 2 5 1362 21 36 0 0 chr6 101877706 101877734 -47639303 + AT_rich Low_complexity Low_complexity 1 28 0 5 1362 261 83 0 0 chr6 101877918 101877954 -47639083 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1362 665 174 0 9 chr6 101877954 101878064 -47638973 - B1_Mur3 SINE Alu -1 148 40 5 1362 588 121 0 0 chr6 101878065 101878156 -47638881 + (TCCC)n Simple_repeat Simple_repeat 3 93 0 5 1362 651 248 43 0 chr6 101878164 101878305 -47638732 - B1_Mur2 SINE Alu -2 147 1 5 1362 201 74 0 0 chr6 101878851 101878878 -47638159 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 5 1362 697 250 0 13 chr6 101879074 101879224 -47637813 - B1_Mur1 SINE Alu -1 148 1 5 1362 3272 38 0 0 chr6 101879739 101880131 -47636906 - L1Md_T LINE L1 0 6582 6191 5 1362 288 53 0 0 chr6 101880159 101880197 -47636840 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1362 297 0 0 0 chr6 101880754 101880787 -47636250 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1362 231 374 0 0 chr6 101881124 101881207 -47635830 + B4A SINE B4 3 85 -207 5 1362 195 0 86 0 chr6 101881207 101881242 -47635795 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 5 1362 795 257 17 0 chr6 101881268 101881443 -47635594 + B4A SINE B4 111 288 -4 5 1362 435 52 0 0 chr6 101881478 101881536 -47635501 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1362 17386 99 4 50 chr6 101882190 101885898 -47631139 + L1_Mus2 LINE L1 3048 6566 0 5 1362 342 213 0 13 chr6 101886085 101886161 -47630876 - MTE2b LTR MaLR -292 87 13 5 1362 267 265 58 58 chr6 101886444 101886548 -47630489 + MLT1A0 LTR MaLR 262 365 0 5 1362 435 261 51 178 chr6 101886857 101887071 -47629966 + B3A SINE B2 1 187 -11 5 1362 22 0 0 0 chr6 101887160 101887182 -47629855 + AT_rich Low_complexity Low_complexity 1 22 0 5 1362 1652 30 0 0 chr6 101887332 101887534 -47629503 - L1Md_T LINE L1 -217 6365 6164 5 1362 297 384 8 8 chr6 101889291 101889417 -47627620 + MER20 DNA MER1_type 35 160 -59 5 1362 4134 121 3 14 chr6 101889553 101890190 -47626847 - L1Md_F2 LINE L1 -12 6570 5941 5 1362 455 292 44 0 chr6 101891020 101891133 -47625904 + RSINE1 SINE B4 3 120 -45 5 1362 648 281 64 38 chr6 101891779 101892093 -47624944 + LTR37A LTR ERV1 57 378 -48 5 1362 1258 86 0 0 chr6 101892208 101892383 -47624654 - L1Md_F2 LINE L1 -386 6196 6022 5 1362 1241 101 0 6 chr6 101892383 101892563 -47624474 + L1_Mus1 LINE L1 6389 6567 0 5 1362 444 256 47 109 chr6 101892699 101892726 -47624311 - B2_Mm2 SINE B2 -11 184 162 5 1362 333 0 0 0 chr6 101892726 101892763 -47624274 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1362 654 256 47 109 chr6 101892763 101892928 -47624109 - B3A SINE B2 -34 161 4 5 1362 465 360 6 30 chr6 101896765 101896897 -47620140 + RSINE1 SINE B4 4 133 -32 5 1362 495 0 0 0 chr6 101896897 101896952 -47620085 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1362 243 61 0 0 chr6 101896952 101896984 -47620053 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1362 465 360 6 30 chr6 101896984 101897016 -47620021 + RSINE1 SINE B4 134 164 -1 5 1362 237 246 0 0 chr6 101897017 101897074 -47619963 + GA-rich Low_complexity Low_complexity 2 58 0 5 1362 623 345 24 35 chr6 101897497 101897785 -47619252 + B4A SINE B4 1 285 -7 5 1362 306 0 0 0 chr6 101900103 101900137 -47616900 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 5 1362 1064 124 6 0 chr6 101900139 101900317 -47616720 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 1362 552 279 14 14 chr6 101900467 101900605 -47616432 - B1_Mur1 SINE Alu 0 149 12 5 1362 249 344 112 58 chr6 101900783 101901061 -47615976 + L2 LINE L2 2748 3040 -379 5 1362 22 0 0 0 chr6 101901701 101901723 -47615314 + AT_rich Low_complexity Low_complexity 1 22 0 5 1362 691 328 49 77 chr6 101901987 101902353 -47614684 + ORR1E LTR MaLR 4 359 0 5 1362 655 199 28 14 chr6 101902732 101902875 -47614162 - ORR1C2 LTR MaLR -233 145 1 5 1362 933 211 0 0 chr6 101902875 101903045 -47613992 - ORR1C2-int LTR MaLR -264 1245 1076 5 1362 5581 199 29 2 chr6 101903045 101904147 -47612890 - MERVL_2A-int LTR ERVL -1160 4601 3470 5 1362 595 271 0 0 chr6 101904156 101904289 -47612748 - ORR1C2-int LTR MaLR -1237 133 1 5 1362 348 130 19 0 chr6 101904289 101904343 -47612694 - ORR1C2 LTR MaLR 0 378 324 5 1362 694 171 247 21 chr6 101904371 101904480 -47612557 - RMER1B Other Other -2 1064 957 5 1362 207 0 0 0 chr6 101904480 101904503 -47612534 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 5 1362 694 171 247 21 chr6 101904503 101904632 -47612405 - RMER1B Other Other -110 956 773 5 1362 1220 229 56 0 chr6 101904632 101904899 -47612138 - ORR1C2 LTR MaLR -33 351 70 5 1362 572 213 82 0 chr6 101907003 101907020 -47610017 - B1_Mus1 SINE Alu -6 142 126 6 1362 495 0 0 0 chr6 101907020 101907075 -47609962 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1362 572 213 82 0 chr6 101907075 101907179 -47609858 - B1_Mus1 SINE Alu -23 125 12 6 1362 482 279 69 33 chr6 101908369 101908643 -47608394 - RLTR15 LTR ERVK -27 332 49 6 1362 1124 75 0 20 chr6 101908669 101908819 -47608218 + B1_Mus1 SINE Alu 2 148 0 6 1362 441 264 55 0 chr6 101909741 101909851 -47607186 - PB1D10 SINE Alu -1 116 1 6 1362 4459 119 1 12 chr6 101909853 101910518 -47606519 - Lx LINE L1 -8 6646 5989 6 1362 378 338 78 33 chr6 101910533 101910686 -47606351 - B3 SINE B2 -30 186 27 6 1362 13732 116 55 2 chr6 101910700 101914008 -47603029 - L1Md_F2 LINE L1 0 6582 2939 6 1362 248 100 0 0 chr6 101914009 101914049 -47602988 - B3A SINE B2 -158 40 1 6 1362 1156 68 0 20 chr6 101914278 101914429 -47602608 - B1_Mus1 SINE Alu 0 148 1 6 1362 350 284 129 0 chr6 101915723 101915839 -47601198 + B1_Mus1 SINE Alu 2 132 -16 6 1362 24 32 0 0 chr6 101917313 101917344 -47599693 + AT_rich Low_complexity Low_complexity 1 31 0 6 1362 189 107 0 0 chr6 101917482 101917510 -47599527 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1362 7078 111 19 10 chr6 101917516 101918868 -47598169 - L1_Mus4 LINE L1 -5 6631 5282 6 1362 201 39 0 0 chr6 101918868 101918894 -47598143 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1362 4905 178 5 39 chr6 101918894 101918913 -47598124 - L1_Mus4 LINE L1 -605 5281 5273 6 1362 1168 82 0 0 chr6 101918913 101919059 -47597978 - B1_Mus2 SINE Alu 0 147 2 6 1362 294 29 0 0 chr6 101919059 101919094 -47597943 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6 1362 4905 178 5 39 chr6 101919094 101919469 -47597568 - L1_Mus4 LINE L1 -614 5272 4899 6 1362 2439 118 6 0 chr6 101920503 101920866 -47596171 - Lx LINE L1 -6 6648 6284 6 1362 399 21 0 0 chr6 101920974 101921022 -47596015 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1362 29 28 0 0 chr6 101922327 101922363 -47594674 + AT_rich Low_complexity Low_complexity 1 36 0 6 1362 1122 218 3 107 chr6 101922430 101922749 -47594288 - RMER10B LTR ERVL -106 292 7 6 1362 25 0 0 0 chr6 101922882 101922907 -47594130 + AT_rich Low_complexity Low_complexity 1 25 0 6 1362 262 0 53 0 chr6 101922965 101923003 -47594034 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 6 1362 1885 193 72 19 chr6 101923138 101923613 -47593424 + Lx2B LINE L1 6495 6994 -6 6 1362 602 253 130 10 chr6 101924503 101924695 -47592342 - MER92B LTR ERV1 -421 215 1 6 1362 4338 66 2 14 chr6 101925003 101925583 -47591454 - L1Md_F2 LINE L1 -1 6581 6009 6 1362 282 238 24 48 chr6 101925680 101925764 -47591273 + L2a LINE L2 3337 3418 -8 6 1362 1391 284 61 3 chr6 101926213 101926556 -47590481 + ORR1D2 LTR MaLR 1 363 -7 6 1362 4160 34 28 4 chr6 101926979 101927484 -47589553 + L1Md_F3 LINE L1 6065 6581 -3 6 1362 22 35 0 0 chr6 101928645 101928674 -47588363 + AT_rich Low_complexity Low_complexity 1 29 0 6 1362 291 28 0 0 chr6 101928707 101928743 -47588294 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1362 653 0 13 0 chr6 101930012 101930089 -47586948 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 6 1362 739 253 160 0 chr6 101930089 101930283 -47586754 - MTD LTR MaLR -194 225 1 6 1362 577 302 22 0 chr6 101930678 101930817 -47586220 + B4 SINE B4 137 278 -14 6 1362 855 46 0 0 chr6 101930865 101930973 -47586064 + (CA)n Simple_repeat Simple_repeat 2 109 0 6 1362 25 51 0 0 chr6 101931298 101931337 -47585700 + AT_rich Low_complexity Low_complexity 1 39 0 6 1362 2022 139 61 128 chr6 101931466 101931927 -47585110 - RLTR23 LTR ERV1 0 430 1 6 1362 193 359 75 11 chr6 101931988 101932081 -47584956 - MIR SINE MIR -163 99 1 6 1362 234 62 0 0 chr6 101932246 101932278 -47584759 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1362 776 137 7 0 chr6 101932278 101932417 -47584620 + (GA)n Simple_repeat Simple_repeat 2 141 0 6 1362 261 0 0 0 chr6 101932708 101932737 -47584300 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1362 1172 258 43 54 chr6 101934242 101934591 -47582446 + ORR1E LTR MaLR 1 345 -14 6 1362 1170 229 25 11 chr6 101935779 101936061 -47580976 + Lx6 LINE L1 7165 7450 -10 6 1362 806 136 5 9 chr6 101936191 101936377 -47580660 + (TCTA)n Simple_repeat Simple_repeat 1 185 0 6 1362 3584 15 0 0 chr6 101936377 101936773 -47580264 + MTA_Mm LTR MaLR 1 396 0 6 1362 806 101 0 13 chr6 101936773 101936791 -47580246 + (TCTA)n Simple_repeat Simple_repeat 2 19 0 6 1362 25 31 0 0 chr6 101937451 101937483 -47579554 + AT_rich Low_complexity Low_complexity 1 32 0 6 1362 3299 71 28 2 chr6 101937528 101937953 -47579084 + RLTR10C LTR ERVK 1 436 0 6 1362 646 273 98 0 chr6 101937998 101938192 -47578845 - B3 SINE B2 0 216 4 6 1362 1926 77 25 5 chr6 101938479 101938782 -47578255 + MTA_Mm LTR MaLR 1 329 -90 6 1362 920 35 0 0 chr6 101938782 101938896 -47578141 - L1Md_F3 LINE L1 -333 6249 6136 6 1362 1778 52 17 0 chr6 101938896 101939126 -47577911 + L1Md_F3 LINE L1 6351 6584 0 6 1362 1503 33 0 0 chr6 101939127 101939307 -47577730 + MTA_Mm LTR MaLR 217 396 0 6 1362 9380 20 7 4 chr6 101939307 101940401 -47576636 + MTA_Mm-int LTR MaLR 1 1098 0 6 1362 3528 25 0 0 chr6 101940401 101940797 -47576240 + MTA_Mm LTR MaLR 1 396 0 6 1362 180 0 0 0 chr6 101940832 101940852 -47576185 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 1362 224 314 105 60 chr6 101941399 101941599 -47575438 + L3 LINE CR1 4145 4353 -136 6 1362 551 342 85 59 chr6 101942006 101942276 -47574761 - B4 SINE B4 -14 278 2 6 1362 370 346 110 28 chr6 101942798 101943188 -47573849 - L2a LINE L2 -45 3381 2960 6 1362 24 0 0 0 chr6 101943385 101943409 -47573628 + AT_rich Low_complexity Low_complexity 1 24 0 6 1362 5737 37 0 0 chr6 101943409 101944084 -47572953 - L1Md_T LINE L1 -2 6580 5906 6 1362 468 0 0 0 chr6 101946183 101946235 -47570802 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1362 339 226 0 57 chr6 101946239 101946361 -47570676 + Lx6 LINE L1 7336 7450 -10 6 1362 464 273 67 34 chr6 101946454 101946632 -47570405 - MLT1K LTR MaLR -8 587 404 6 1362 362 245 71 54 chr6 101947896 101948008 -47569029 - MER20 DNA MER1_type -81 138 25 6 1362 437 256 97 8 chr6 101949777 101949911 -47567126 + B3 SINE B2 67 212 -4 6 1362 315 0 0 0 chr6 101950674 101950709 -47566328 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1362 441 0 0 0 chr6 101950709 101950757 -47566280 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1362 285 306 72 104 chr6 101951521 101951714 -47565323 + MER58A DNA MER1_type 19 205 -19 6 1362 1958 154 10 0 chr6 101952064 101952370 -47564667 - RLTR27 LTR ERVK 0 309 1 6 1362 409 361 33 33 chr6 101952472 101952687 -47564350 + ID_B1 SINE B4 3 217 -7 6 1362 430 284 189 0 chr6 101953749 101953897 -47563140 + B4 SINE B4 2 177 -115 6 1362 7858 30 0 0 chr6 101954401 101955320 -47561717 + L1Md_T LINE L1 5663 6581 -1 6 1362 250 200 67 0 chr6 101956406 101956466 -47560571 + ETnERV2-int LTR ERVK 6533 6596 -810 6 1362 390 312 29 17 chr6 101957652 101957825 -47559212 - L1M4 LINE L1 -1963 4183 4009 6 1362 191 61 30 0 chr6 101958383 101958416 -47558621 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1362 384 299 173 72 chr6 101958582 101958831 -47558206 - B4 SINE B4 -18 274 1 6 1362 28 105 0 0 chr6 101958953 101959058 -47557979 + AT_rich Low_complexity Low_complexity 1 105 0 6 1362 1889 312 103 58 chr6 101959814 101960694 -47556343 + Lx8 LINE L1 6554 7473 0 6 1362 7850 59 2 6 chr6 101960708 101961700 -47555337 + L1Md_F2 LINE L1 5587 6574 -8 6 1362 946 164 10 30 chr6 101961710 101961911 -47555126 + Lx2 LINE L1 6801 6997 0 6 1362 1480 40 90 0 chr6 101961941 101962142 -47554895 + MTB LTR MaLR 182 400 0 6 1362 652 281 83 88 chr6 101962217 101962885 -47554152 + L1M3 LINE L1 4564 5242 -904 6 1362 198 0 0 0 chr6 101962917 101962939 -47554098 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1362 385 192 59 119 chr6 101962987 101963105 -47553932 + MT2B LTR ERVL 154 264 -337 6 1362 918 157 0 0 chr6 101962999 101963139 -47553898 + B1_Mur3 SINE Alu 9 148 -1 6 1362 843 289 57 33 chr6 101963213 101963581 -47553456 + MTEb LTR MaLR 3 379 0 6 1362 4071 324 66 22 chr6 101963592 101965089 -47551948 + MTEb-int LTR MaLR 16 1578 -2 6 1362 915 327 32 12 chr6 101965111 101965451 -47551586 + MTEb LTR MaLR 27 373 -6 6 1362 489 290 25 31 chr6 101965520 101965680 -47551357 - B3 SINE B2 -1 215 57 6 1362 1920 180 104 104 chr6 101965854 101966352 -47550685 - RMER6C LTR ERVK 0 690 217 6 1362 1119 88 0 0 chr6 101966352 101966499 -47550538 - B1_Mus2 SINE Alu 0 147 1 6 1362 1920 180 104 104 chr6 101966499 101966690 -47550347 - RMER6C LTR ERVK -474 216 1 6 1362 198 156 0 0 chr6 101966705 101966750 -47550287 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 6 1362 291 252 6 123 chr6 101966798 101966890 -47550147 + L1M3 LINE L1 5683 5771 -413 6 1362 221 0 0 33 chr6 101966890 101966920 -47550117 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1362 290 252 6 123 chr6 101966920 101966990 -47550047 + L1M3 LINE L1 5772 5826 -358 6 1362 24 53 0 0 chr6 101968200 101968238 -47548799 + AT_rich Low_complexity Low_complexity 1 38 0 6 1362 357 262 55 39 chr6 101968791 101968918 -47548119 - MLT1A LTR MaLR -24 350 222 6 1362 586 331 71 34 chr6 101969127 101969421 -47547616 + MTEa LTR MaLR 75 379 0 6 1362 256 98 113 16 chr6 101969490 101969552 -47547485 + L1MB3 LINE L1 6105 6172 -11 6 1362 31 26 0 0 chr6 101969975 101970013 -47547024 + AT_rich Low_complexity Low_complexity 1 38 0 6 1362 897 225 69 5 chr6 101970013 101970201 -47546836 + B3 SINE B2 8 207 -9 6 1362 23 0 0 0 chr6 101970259 101970282 -47546755 + AT_rich Low_complexity Low_complexity 1 23 0 6 1362 297 0 0 0 chr6 101970732 101970765 -47546272 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1362 378 0 0 0 chr6 101970765 101970806 -47546231 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1362 867 182 0 0 chr6 101970927 101971070 -47545967 + B1_Mur4 SINE Alu 2 144 -6 6 1362 180 0 0 0 chr6 101971077 101971097 -47545940 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1362 345 100 0 0 chr6 101971107 101971157 -47545880 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1362 235 0 0 54 chr6 101971894 101971931 -47545106 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1362 415 303 135 50 chr6 101972438 101972882 -47544155 + L1M5 LINE L1 2676 3157 -2989 7 1362 268 280 50 10 chr6 101973026 101973127 -47543910 + L1M5 LINE L1 3597 3701 -2445 7 1362 2101 276 68 39 chr6 101973222 101973939 -47543098 + Lx8 LINE L1 6214 6951 -522 7 170 683 99 45 45 chr6 101973940 101974119 -47542918 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 7 1363 429 20 0 0 chr6 101974120 101974170 -47542867 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1363 465 329 67 57 chr6 101974174 101974471 -47542566 + Lx8 LINE L1 6960 7259 -214 7 1363 320 329 142 7 chr6 101974505 101974646 -47542391 + RLTR18B LTR ERVK 40 199 -313 7 1363 752 225 144 43 chr6 101974775 101975142 -47541895 + RLTR18 LTR ERVK 98 616 0 7 1363 364 297 69 86 chr6 101975142 101975374 -47541663 + Lx8 LINE L1 7246 7473 0 7 1363 21 0 0 0 chr6 101975374 101975395 -47541642 + AT_rich Low_complexity Low_complexity 1 21 0 7 1363 590 244 70 8 chr6 101977006 101977134 -47539903 + B4 SINE B4 2 137 -155 7 1363 689 306 23 54 chr6 101977353 101977574 -47539463 + B4A SINE B4 77 290 -2 7 1363 590 226 55 73 chr6 101978035 101978255 -47538782 - RCHARR1 DNA MER1_type -19 955 740 7 1363 487 253 102 0 chr6 101978310 101978471 -47538566 - RCHARR1 DNA MER1_type -210 764 587 7 1363 309 339 63 24 chr6 101978471 101978598 -47538439 + RSINE1 SINE B4 4 135 -30 7 1363 15629 111 28 4 chr6 101978693 101981905 -47535132 + L1VL2 LINE L1 582 3924 -1962 7 1363 217 262 0 0 chr6 101981929 101981971 -47535066 + B4A SINE B4 90 131 -161 7 1363 1090 271 3 28 chr6 101982556 101982882 -47534155 + L1_Mur3 LINE L1 2485 2802 -3078 7 1363 318 98 0 0 chr6 101982946 101982997 -47534040 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1363 492 18 0 0 chr6 101982997 101983053 -47533984 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1363 1054 98 23 0 chr6 101983782 101983955 -47533082 + (TTTTC)n Simple_repeat Simple_repeat 3 179 0 7 1363 1152 82 0 0 chr6 101983975 101984122 -47532915 - B1_Mm SINE Alu 0 147 1 7 1363 385 156 10 10 chr6 101984123 101984220 -47532817 + CT-rich Low_complexity Low_complexity 1 97 0 7 1363 755 273 26 11 chr6 101984239 101984428 -47532609 + B3 SINE B2 1 192 -24 7 1363 423 0 0 0 chr6 101984432 101984479 -47532558 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1363 29 0 0 0 chr6 101985041 101985070 -47531967 + AT_rich Low_complexity Low_complexity 1 29 0 7 1363 41082 7 0 1 chr6 101985070 101991854 -47525183 - L1Md_A LINE L1 0 6582 1 7 1363 307 320 180 23 chr6 101991933 101992061 -47524976 - RSINE1 SINE B4 -4 161 14 7 1363 561 283 99 116 chr6 101992487 101992842 -47524195 + ORR1E LTR MaLR 6 354 -5 7 1363 303 28 0 0 chr6 101993399 101993435 -47523602 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 7 1363 4133 90 2 0 chr6 101993788 101994352 -47522685 - L1_Mus1 LINE L1 -1 6566 6002 7 1363 1116 57 140 11 chr6 101994943 101995002 -47522035 - L1_Mur1 LINE L1 -534 5352 5294 7 1363 218 56 0 27 chr6 101995002 101995039 -47521998 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1363 1116 57 140 11 chr6 101995039 101995062 -47521975 - L1_Mur1 LINE L1 -593 5293 5247 7 1363 3766 113 12 67 chr6 101995062 101995311 -47521726 - L1_Mus3 LINE L1 0 6638 6384 7 1363 199 0 65 0 chr6 101995311 101995342 -47521695 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1363 3766 113 12 67 chr6 101995342 101995738 -47521299 - L1_Mus3 LINE L1 -255 6383 6028 7 1363 1116 57 140 11 chr6 101995738 101995833 -47521204 - L1_Mur1 LINE L1 -640 5246 5152 7 1363 993 130 0 61 chr6 101995833 101996018 -47521019 + Lx3A LINE L1 6791 6966 -15 7 1363 252 0 0 0 chr6 101996018 101996046 -47520991 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 7 1363 3914 137 77 8 chr6 101996826 101997532 -47519505 + RMER6A LTR ERVK 1 754 -2 7 1363 710 171 210 5 chr6 101997655 101997855 -47519182 - L1_Mur3 LINE L1 -390 5490 5250 7 1363 525 252 0 0 chr6 101997855 101998006 -47519031 + (CATA)n Simple_repeat Simple_repeat 1 151 0 7 1363 1445 197 34 213 chr6 101998009 101998314 -47518723 - L1_Mur3 LINE L1 -642 5238 4936 7 1363 669 137 0 0 chr6 101998314 101998416 -47518621 - RMER6A LTR ERVK -59 697 596 7 1363 1445 197 34 213 chr6 101998416 101998590 -47518447 - L1_Mur3 LINE L1 -642 4935 4762 7 1363 5439 227 21 16 chr6 101998590 102000000 -47517037 + Lx7 LINE L1 5494 6920 -776 7 1363 2393 244 77 69 chr6 102000000 102000767 -47516270 + Lx7 LINE L1 6921 7693 -3 1 1363 7759 19 0 0 chr6 102001236 102002132 -47514905 - L1Md_A LINE L1 -1 6581 5699 2 1363 276 231 0 21 chr6 102003183 102003276 -47513761 + Lx6 LINE L1 7341 7431 -29 3 1363 297 50 25 0 chr6 102003277 102003317 -47513720 + (GGA)n Simple_repeat Simple_repeat 1 41 0 4 1363 960 216 0 0 chr6 102003320 102003577 -47513460 + GA-rich Low_complexity Low_complexity 1 257 0 5 1363 1305 271 53 33 chr6 102003827 102004220 -47512817 - Lx6 LINE L1 -26 7434 7034 6 1363 248 314 24 63 chr6 102004330 102004456 -47512581 - Lx5 LINE L1 -391 6659 6539 7 1363 459 336 38 29 chr6 102004852 102005091 -47511946 + B4A SINE B4 48 288 -4 8 1363 609 14 0 0 chr6 102005093 102005163 -47511874 + (CA)n Simple_repeat Simple_repeat 1 70 0 9 1363 618 14 0 0 chr6 102005163 102005233 -47511804 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1363 7031 31 0 2 chr6 102006011 102006846 -47510191 - L1Md_F3 LINE L1 -3 6581 5749 1 1363 465 66 0 0 chr6 102007016 102007077 -47509960 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 1 1363 743 291 77 77 chr6 102007081 102007446 -47509591 - MTD LTR MaLR -54 365 1 1 1363 5534 107 121 9 chr6 102007742 102008873 -47508164 + Lx3B LINE L1 5186 6443 -530 1 1363 321 310 8 25 chr6 102008895 102009014 -47508023 + Charlie4a DNA MER1_type 391 507 -1 1 1363 373 35 52 0 chr6 102009172 102009230 -47507807 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 1 1363 3423 194 11 3 chr6 102009231 102009868 -47507169 - Lx LINE L1 -1 6653 6012 1 1363 252 143 0 0 chr6 102010789 102010831 -47506206 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1363 579 88 0 0 chr6 102010890 102010981 -47506056 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1 1363 23 0 0 0 chr6 102011099 102011122 -47505915 + AT_rich Low_complexity Low_complexity 1 23 0 2 1363 34 24 0 0 chr6 102013101 102013142 -47503895 + AT_rich Low_complexity Low_complexity 1 41 0 2 1363 393 184 51 0 chr6 102013155 102013253 -47503784 + Lx9 LINE L1 7538 7640 -4 2 1363 21 57 0 0 chr6 102013278 102013313 -47503724 + AT_rich Low_complexity Low_complexity 1 35 0 2 1363 16493 52 0 5 chr6 102014214 102017002 -47500035 - L1Md_F2 LINE L1 -8 6574 3800 2 1363 378 0 0 0 chr6 102017821 102017863 -47499174 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1363 659 239 116 0 chr6 102017899 102018037 -47499000 - B3A SINE B2 -42 156 3 2 1363 9910 171 98 21 chr6 102018171 102019585 -47497452 + Lx5 LINE L1 3629 5205 -672 2 1363 2821 83 0 46 chr6 102019585 102020002 -47497035 - L1Md_F2 LINE L1 -4 6578 6181 2 1363 9910 165 45 26 chr6 102020002 102021429 -47495608 + Lx5 LINE L1 5206 6642 -408 2 1363 809 213 18 41 chr6 102022285 102022456 -47494581 + Lx5 LINE L1 6633 6799 -251 2 1363 396 375 91 14 chr6 102023271 102023386 -47493651 + MLT1C LTR MaLR 51 169 -298 2 1363 381 17 0 49 chr6 102023386 102023447 -47493590 + (TTTTG)n Simple_repeat Simple_repeat 1 58 0 3 1363 396 375 91 14 chr6 102023447 102023628 -47493409 + MLT1C LTR MaLR 170 369 -98 2 1363 23 0 0 0 chr6 102024014 102024037 -47493000 + AT_rich Low_complexity Low_complexity 1 23 0 3 1363 494 57 14 0 chr6 102024099 102024169 -47492868 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1363 617 301 98 0 chr6 102024174 102024327 -47492710 - B3A SINE B2 -30 168 1 3 1363 494 286 129 0 chr6 102024486 102024626 -47492411 - RSINE1 SINE B4 -2 163 6 3 1363 312 280 101 40 chr6 102024632 102024781 -47492256 - L1MB7 LINE L1 -113 6071 5914 3 1363 277 269 50 36 chr6 102025177 102025316 -47491721 - Lx7 LINE L1 -6 7690 7550 3 1363 480 18 0 0 chr6 102025355 102025412 -47491625 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1363 885 341 61 20 chr6 102025460 102025852 -47491185 - Lx7 LINE L1 -406 7290 6883 3 1363 1621 275 67 15 chr6 102025914 102026390 -47490647 + Lx6 LINE L1 6949 7449 -11 3 1363 216 432 0 0 chr6 102026679 102026760 -47490277 + ID4_ SINE ID 2 82 -1 3 1363 689 317 125 37 chr6 102026795 102027251 -47489786 + Lx8 LINE L1 6972 7467 -6 4 1363 21 36 0 0 chr6 102027288 102027316 -47489721 + AT_rich Low_complexity Low_complexity 1 28 0 4 1363 30 27 0 0 chr6 102027547 102027584 -47489453 + AT_rich Low_complexity Low_complexity 1 37 0 4 1363 183 297 158 7 chr6 102027711 102027821 -47489216 - MIRb SINE MIR -15 253 115 4 1363 432 319 34 41 chr6 102028777 102028924 -47488113 + RSINE1 SINE B4 16 161 -4 4 1363 437 276 83 75 chr6 102028930 102029063 -47487974 - B1_Mur2 SINE Alu -2 147 14 4 1363 254 287 63 90 chr6 102028971 102029082 -47487955 - MT2B LTR ERVL -338 263 156 4 1363 263 373 0 17 chr6 102029629 102029749 -47487288 - MIRb SINE MIR -67 201 84 4 1363 241 320 130 43 chr6 102029943 102030289 -47486748 + L1ME3 LINE L1 5612 5987 -175 4 1363 198 0 0 0 chr6 102032934 102032956 -47484081 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1363 1300 30 12 6 chr6 102033153 102033322 -47483715 + (GGGAGA)n Simple_repeat Simple_repeat 3 172 0 5 1363 249 83 0 0 chr6 102033343 102033379 -47483658 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1363 283 238 31 16 chr6 102033810 102033874 -47483163 + MIRb SINE MIR 198 262 -6 5 1363 9684 11 0 2 chr6 102035002 102036104 -47480933 + L1Md_A LINE L1 4487 5586 -297 5 1363 8597 23 0 0 chr6 102036104 102037100 -47479937 + L1Md_A LINE L1 5587 6582 0 5 1363 300 27 0 0 chr6 102037939 102037976 -47479061 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1363 2977 244 55 25 chr6 102039592 102040527 -47476510 + RMER1B Other Other 9 1066 0 5 1363 12627 159 195 7 chr6 102040530 102044387 -47472650 - Lx3C LINE L1 -2 6974 2388 5 1363 4946 88 6 6 chr6 102045238 102045926 -47471111 - L1Md_F2 LINE L1 -4 6578 5891 5 1363 416 344 25 6 chr6 102047947 102048108 -47468929 + Lx8 LINE L1 7107 7270 -203 5 1363 628 255 258 24 chr6 102049043 102049383 -47467654 - MTD LTR MaLR 0 419 1 5 1363 773 191 65 15 chr6 102049410 102049590 -47467447 + ORR1B1 LTR MaLR 190 394 0 6 1363 1477 301 60 6 chr6 102049767 102050284 -47466753 + Lx8 LINE L1 6600 7144 -329 6 1363 270 0 0 0 chr6 102050295 102050325 -47466712 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1363 711 54 0 0 chr6 102050420 102050512 -47466525 + (TTTTG)n Simple_repeat Simple_repeat 1 92 0 6 1363 239 311 67 8 chr6 102050600 102050720 -47466317 + Lx8 LINE L1 6804 6930 -543 6 1363 437 323 34 117 chr6 102050734 102051085 -47465952 + Lx8 LINE L1 7152 7473 0 6 1363 708 286 61 72 chr6 102051201 102051480 -47465557 - MTE2a LTR MaLR -99 280 5 6 1363 32 0 0 0 chr6 102051488 102051520 -47465517 + AT_rich Low_complexity Low_complexity 1 32 0 6 1363 23 33 0 0 chr6 102053100 102053130 -47463907 + AT_rich Low_complexity Low_complexity 1 30 0 6 1363 410 299 8 33 chr6 102053754 102053875 -47463162 + RSINE1 SINE B4 44 161 -4 6 1363 435 266 43 17 chr6 102054543 102054658 -47462379 + B4A SINE B4 1 118 -174 6 1363 443 18 0 18 chr6 102054668 102054725 -47462312 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1363 1475 237 40 38 chr6 102054751 102054945 -47462092 - ORR1D1 LTR MaLR 0 374 171 7 1363 506 43 14 0 chr6 102054945 102055014 -47462023 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 1363 1475 237 40 38 chr6 102055014 102055046 -47461991 - ORR1D1 LTR MaLR -204 170 143 7 1363 3470 64 18 4 chr6 102055046 102055499 -47461538 - L1Md_F2 LINE L1 -10 6572 6114 7 1363 1475 237 40 38 chr6 102055499 102055644 -47461393 - ORR1D1 LTR MaLR -232 142 2 7 1363 230 187 87 70 chr6 102056063 102056178 -47460859 - L1M5 LINE L1 -653 5471 5355 7 1363 31 26 0 0 chr6 102056468 102056506 -47460531 + AT_rich Low_complexity Low_complexity 1 38 0 7 1363 1094 88 0 0 chr6 102057353 102057490 -47459547 + B1_Mus1 SINE Alu 2 138 -10 7 1363 261 57 0 0 chr6 102057490 102057525 -47459512 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 1363 1686 156 0 72 chr6 102058021 102058353 -47458684 + Lx3C LINE L1 6667 6974 -2 7 1363 647 54 0 0 chr6 102058477 102058570 -47458467 + L1_Mus2 LINE L1 6474 6566 0 7 1363 314 351 76 0 chr6 102060228 102060359 -47456678 + MER76 LTR ERVL 257 397 -294 8 1363 441 280 108 17 chr6 102060418 102060630 -47456407 + RMER20B LTR ERVK 145 376 -140 8 1363 800 288 128 13 chr6 102061835 102062233 -47454804 - Lx8 LINE L1 -766 6707 6264 8 1363 501 17 0 0 chr6 102062276 102062334 -47454703 + (TC)n Simple_repeat Simple_repeat 1 58 0 8 1363 5685 121 14 18 chr6 102062560 102063475 -47453562 + Lx3A LINE L1 6067 6978 -3 8 1363 340 365 29 68 chr6 102063793 102063999 -47453038 + Tigger12c DNA MER2_type 1 198 -536 8 1363 751 158 14 0 chr6 102064056 102064202 -47452835 + (TCTA)n Simple_repeat Simple_repeat 1 148 0 8 1363 593 324 17 28 chr6 102064221 102064402 -47452635 - B3A SINE B2 -18 180 2 8 1363 320 287 104 24 chr6 102064468 102064517 -47452520 - ID_B1 SINE B4 0 224 90 8 1363 322 240 79 13 chr6 102064517 102064593 -47452444 - PB1D10 SINE Alu -28 89 9 8 1363 4038 78 0 0 chr6 102066350 102066877 -47450160 - L1Md_T LINE L1 0 6582 6056 9 1363 325 129 0 28 chr6 102068719 102068791 -47448246 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 9 1363 181 0 33 33 chr6 102069432 102069462 -47447575 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1363 189 0 0 0 chr6 102069465 102069486 -47447551 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1363 1366 247 63 25 chr6 102069868 102070233 -47446804 - MTC LTR MaLR -1 420 42 9 1363 191 156 0 0 chr6 102070323 102070355 -47446682 + MIR SINE MIR 95 126 -82 9 1363 655 65 11 0 chr6 102071704 102071797 -47445240 - L1_Mur1 LINE L1 -1106 4780 4687 9 1363 1780 187 27 94 chr6 102071829 102072077 -47444960 + RLTR41 LTR ERV1 62 289 -157 9 1363 1061 95 0 0 chr6 102072077 102072214 -47444823 + B1_Mus1 SINE Alu 4 140 -8 9 1363 207 0 0 0 chr6 102072214 102072237 -47444800 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1363 1780 187 27 94 chr6 102072237 102072400 -47444637 + RLTR41 LTR ERV1 290 445 -1 9 1363 4596 157 14 17 chr6 102072404 102072714 -47444323 - L1_Mur1 LINE L1 -1207 4679 4377 1 1363 7647 57 21 8 chr6 102072714 102073695 -47443342 + L1Md_F2 LINE L1 5587 6580 -2 1 1363 4596 157 14 17 chr6 102073695 102074318 -47442719 - L1_Mur1 LINE L1 -1510 4376 3749 1 1363 5347 166 49 9 chr6 102074348 102075037 -47442000 + Lx2B LINE L1 4777 5504 -382 1 1363 1914 140 76 6 chr6 102075037 102075381 -47441656 - RLTR9A LTR ERVK 0 368 1 1 1363 5347 142 28 40 chr6 102075381 102076225 -47440812 + Lx2B LINE L1 5505 6356 -644 1 1363 231 61 0 0 chr6 102076225 102076258 -47440779 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1363 4964 139 26 44 chr6 102076258 102076435 -47440602 + Lx2B LINE L1 6357 6502 -498 1 1363 6902 18 1 0 chr6 102076432 102077274 -47439763 - L1Md_T LINE L1 -424 5459 4617 1 1363 1138 36 0 0 chr6 102077268 102077407 -47439630 + L1Md_T LINE L1 5448 5586 -297 1 1363 8439 34 0 0 chr6 102077407 102078403 -47438634 + L1Md_T LINE L1 5587 6582 0 1 1363 2559 169 47 12 chr6 102078403 102078894 -47438143 + Lx2B LINE L1 6489 6996 -4 1 1363 24 0 0 0 chr6 102079579 102079603 -47437434 + AT_rich Low_complexity Low_complexity 1 24 0 1 1363 237 240 0 0 chr6 102079749 102079824 -47437213 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1363 240 100 0 0 chr6 102080145 102080185 -47436852 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1363 734 73 9 0 chr6 102080185 102080294 -47436743 + (GA)n Simple_repeat Simple_repeat 2 112 0 1 1363 369 299 163 10 chr6 102080633 102080836 -47436201 - RMER15 LTR ERVL -42 533 300 1 1363 195 162 0 0 chr6 102081493 102081530 -47435507 + T-rich Low_complexity Low_complexity 1 37 0 1 1363 29 0 0 0 chr6 102081761 102081790 -47435247 + AT_rich Low_complexity Low_complexity 1 29 0 1 1363 2108 73 4 0 chr6 102081801 102082075 -47434962 - ORR1A2 LTR MaLR -52 275 1 1 1363 258 32 0 0 chr6 102082442 102082473 -47434564 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1363 859 119 0 0 chr6 102082492 102082618 -47434419 + B1_Mus2 SINE Alu 1 126 -21 1 1363 597 28 0 0 chr6 102082622 102082693 -47434344 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1363 252 0 0 0 chr6 102082693 102082720 -47434317 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1363 25 0 0 0 chr6 102082784 102082809 -47434228 + AT_rich Low_complexity Low_complexity 1 25 0 1 1363 435 206 38 0 chr6 102082896 102083056 -47433981 + (TA)n Simple_repeat Simple_repeat 2 167 0 1 1363 5312 106 29 25 chr6 102083140 102083991 -47433046 - Lx3_Mus LINE L1 0 7009 6155 1 1363 3679 78 13 0 chr6 102083985 102084460 -47432577 - L1_Mus1 LINE L1 -3 6564 6084 1 1363 2527 69 0 3 chr6 102084460 102084809 -47432228 + L1_Mus1 LINE L1 5735 6082 -484 1 1363 3458 91 47 65 chr6 102084811 102084937 -47432100 - Lx3_Mus LINE L1 -818 6191 6052 1 1363 683 12 0 34 chr6 102084937 102085026 -47432011 + (TCCC)n Simple_repeat Simple_repeat 3 88 0 1 1363 7893 78 9 11 chr6 102085026 102086323 -47430714 - Lx3_Mus LINE L1 -958 6051 4783 1 1363 14362 110 47 6 chr6 102086320 102089251 -47427786 - Lx3_Mus LINE L1 -2373 3513 210 1 1363 467 329 21 0 chr6 102089718 102089858 -47427179 - MER58A DNA MER1_type -70 154 12 1 1363 226 256 0 0 chr6 102089861 102089939 -47427098 - L1MEc LINE L1 -4671 1729 1652 1 1363 239 226 12 23 chr6 102089965 102090051 -47426986 + T-rich Low_complexity Low_complexity 3 87 0 1 1363 210 164 55 0 chr6 102090010 102090065 -47426972 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 1 1363 1842 57 0 0 chr6 102090120 102090349 -47426688 - L1Md_T LINE L1 0 6582 6354 1 1363 8724 39 5 20 chr6 102090352 102092290 -47424747 - L1Md_A LINE L1 -3560 2323 420 1 1363 332 118 0 14 chr6 102092451 102092520 -47424517 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1363 646 259 40 28 chr6 102092791 102093124 -47423913 - L1MA6 LINE L1 -473 5827 5533 1 1363 766 293 11 17 chr6 102093243 102093420 -47423617 - B3 SINE B2 -38 178 3 1 1363 1347 318 62 30 chr6 102093449 102094580 -47422457 - L1MA6 LINE L1 -539 5338 4160 1 1363 202 232 0 42 chr6 102096205 102096244 -47420793 + A-rich Low_complexity Low_complexity 1 39 0 1 1363 4629 110 28 9 chr6 102096244 102096933 -47420104 + Lx3_Mus LINE L1 6300 7001 -8 1 1363 202 232 0 42 chr6 102096933 102096965 -47420072 + A-rich Low_complexity Low_complexity 40 69 0 1 1363 519 340 43 14 chr6 102097116 102097325 -47419712 - ID_B1 SINE B4 0 224 10 1 1363 280 372 96 0 chr6 102097372 102097622 -47419415 - B4A SINE B4 -18 274 1 1 1363 748 251 103 118 chr6 102097682 102098130 -47418907 + RMER4A LTR ERVK 17 457 -9 1 1363 4393 43 6 2 chr6 102098618 102099149 -47417888 - L1Md_F2 LINE L1 0 6582 6050 1 1363 1510 250 30 19 chr6 102099257 102099628 -47417409 + Lx7 LINE L1 6438 6812 -884 1 1363 33 25 0 0 chr6 102099863 102099903 -47417134 + AT_rich Low_complexity Low_complexity 1 40 0 1 1363 297 0 0 0 chr6 102099932 102099965 -47417072 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1363 423 0 0 0 chr6 102099965 102100011 -47417026 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1363 189 0 0 0 chr6 102100027 102100048 -47416989 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1363 21 0 0 0 chr6 102100514 102100535 -47416502 + AT_rich Low_complexity Low_complexity 1 21 0 1 1363 226 328 106 28 chr6 102100817 102100958 -47416079 - B4 SINE B4 -129 163 12 1 1363 519 295 138 43 chr6 102101549 102101896 -47415141 + L1MA7 LINE L1 4149 4528 -1615 1 1363 486 283 93 48 chr6 102101904 102102260 -47414777 + L1MA7 LINE L1 5388 5759 -541 1 1363 267 336 75 8 chr6 102102463 102102583 -47414454 - MLT1H1 LTR MaLR -427 128 1 1 1363 304 232 0 44 chr6 102102935 102103025 -47414012 + (TATG)n Simple_repeat Simple_repeat 4 89 0 1 1363 501 17 0 0 chr6 102103025 102103083 -47413954 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1363 313 246 124 11 chr6 102104225 102104410 -47412627 + L1MA7 LINE L1 6085 6290 -1 1 1363 309 26 0 0 chr6 102104411 102104449 -47412588 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1364 234 313 0 0 chr6 102105214 102105281 -47411756 - ID4 SINE ID 0 83 17 1 1364 238 316 0 0 chr6 102105282 102105358 -47411679 - PB1D10 SINE Alu -11 106 31 1 1364 281 274 0 19 chr6 102105472 102105576 -47411461 + L1M2 LINE L1 4670 4771 -1372 1 1364 789 290 95 75 chr6 102105634 102105981 -47411056 - MTEa LTR MaLR -25 354 1 1 1364 766 306 65 19 chr6 102105982 102106320 -47410717 + L1M2 LINE L1 4814 5152 -991 1 1364 198 0 0 0 chr6 102106320 102106342 -47410695 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1 1364 766 306 65 19 chr6 102106342 102106480 -47410557 + L1M2 LINE L1 5153 5312 -831 1 1364 1570 214 19 63 chr6 102106498 102106877 -47410160 + ORR1D1 LTR MaLR 11 372 -2 1 1364 306 0 0 0 chr6 102107082 102107116 -47409921 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1364 1940 171 106 8 chr6 102108237 102108614 -47408423 - MTC LTR MaLR 0 421 8 1 1364 288 0 0 0 chr6 102108694 102108726 -47408311 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1364 250 204 23 0 chr6 102108726 102108814 -47408223 + (TA)n Simple_repeat Simple_repeat 1 90 0 1 1364 283 306 8 24 chr6 102108852 102108885 -47408152 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 1 1364 198 0 0 0 chr6 102108885 102108907 -47408130 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1364 283 306 8 24 chr6 102108907 102108997 -47408040 + (CATATA)n Simple_repeat Simple_repeat 5 93 0 1 1364 234 0 0 0 chr6 102110190 102110216 -47406821 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1364 190 333 14 55 chr6 102110246 102110319 -47406718 - L2b LINE L2 -36 3339 3270 1 1364 22 0 0 0 chr6 102111337 102111359 -47405678 + AT_rich Low_complexity Low_complexity 1 22 0 1 1364 397 0 38 0 chr6 102112488 102112541 -47404496 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1364 456 29 14 28 chr6 102112547 102112619 -47404418 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1364 185 57 0 117 chr6 102112873 102112933 -47404104 + A-rich Low_complexity Low_complexity 2 54 0 1 1364 475 43 14 14 chr6 102114886 102114957 -47402080 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1364 241 270 32 0 chr6 102115465 102115528 -47401509 + MLT1A LTR MaLR 8 72 -302 1 1364 291 28 0 0 chr6 102115533 102115569 -47401468 + (TAG)n Simple_repeat Simple_repeat 1 36 0 1 1364 360 64 0 0 chr6 102115567 102115614 -47401423 + (GGA)n Simple_repeat Simple_repeat 3 49 0 1 1364 252 167 0 0 chr6 102115612 102115660 -47401377 + (CAG)n Simple_repeat Simple_repeat 2 49 0 1 1364 243 211 0 0 chr6 102116067 102116162 -47400875 + T-rich Low_complexity Low_complexity 1 95 0 1 1364 21 36 0 0 chr6 102116237 102116265 -47400772 + AT_rich Low_complexity Low_complexity 1 28 0 1 1364 556 186 182 25 chr6 102116619 102116740 -47400297 + B1_Mur4 SINE Alu 3 142 -8 1 1364 190 0 67 0 chr6 102116772 102116802 -47400235 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1364 205 51 51 0 chr6 102116812 102116851 -47400186 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1364 528 288 25 94 chr6 102117501 102117731 -47399306 + B3A SINE B2 2 216 0 1 1364 370 315 30 8 chr6 102118420 102118551 -47398486 - B1F SINE Alu -13 136 3 1 1364 243 0 0 0 chr6 102119806 102119833 -47397204 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1364 1239 48 0 0 chr6 102119836 102119982 -47397055 - B1_Mus1 SINE Alu -2 146 1 1 1364 717 30 0 29 chr6 102120943 102121046 -47395991 + (CATAC)n Simple_repeat Simple_repeat 2 101 0 1 1364 21 0 0 0 chr6 102122572 102122593 -47394444 + AT_rich Low_complexity Low_complexity 1 21 0 1 1364 886 279 74 69 chr6 102123010 102123407 -47393630 - MTE2a LTR MaLR -13 406 6 1 1364 786 260 53 43 chr6 102124045 102124254 -47392783 + MTEa LTR MaLR 68 278 -101 1 1364 4775 95 91 8 chr6 102124402 102125188 -47391849 + L1_Mus3 LINE L1 5571 6392 -246 1 1364 34122 50 8 4 chr6 102125185 102130454 -47386583 + L1Md_T LINE L1 334 5586 -297 1 1364 8442 31 2 0 chr6 102130454 102131447 -47385590 + L1Md_T LINE L1 5587 6581 -1 1 1364 1563 98 12 4 chr6 102131486 102131733 -47385304 + L1_Mus3 LINE L1 6374 6622 -16 1 1364 441 0 0 0 chr6 102131737 102131786 -47385251 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1364 277 299 206 50 chr6 102132092 102132233 -47384804 + RSINE1 SINE B4 3 165 0 1 1364 410 372 84 13 chr6 102132267 102132575 -47384462 - L2a LINE L2 -142 3284 2955 1 1364 465 19 0 0 chr6 102132784 102132838 -47384199 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1364 375 298 123 40 chr6 102132910 102133162 -47383875 - B4 SINE B4 -18 274 2 1 1364 251 348 40 73 chr6 102133262 102133386 -47383651 + RSINE1 SINE B4 46 165 0 1 1364 419 0 20 0 chr6 102133394 102133445 -47383592 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1364 198 306 85 101 chr6 102134835 102135082 -47381955 + MIRc SINE MIR 18 260 -8 1 1364 204 97 0 0 chr6 102135298 102135329 -47381708 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1364 483 331 30 54 chr6 102135332 102135498 -47381539 - RSINE1 SINE B4 -1 164 3 2 1364 295 384 56 9 chr6 102135751 102135964 -47381073 - MamRep434 DNA TcMar -132 294 72 2 1364 619 340 33 22 chr6 102137972 102138246 -47378791 + B4A SINE B4 5 281 -11 2 1364 411 21 0 0 chr6 102138247 102138295 -47378742 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1364 641 330 11 0 chr6 102138846 102139028 -47378009 + ID_B1 SINE B4 13 196 -28 2 1364 236 258 75 15 chr6 102140313 102140380 -47376657 - ID4_ SINE ID -1 82 12 2 1364 285 240 142 47 chr6 102140402 102140529 -47376508 - B1F SINE Alu -1 148 10 2 1364 21 0 0 0 chr6 102140529 102140550 -47376487 + AT_rich Low_complexity Low_complexity 1 21 0 2 1364 234 0 0 0 chr6 102141370 102141396 -47375641 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1364 663 137 17 33 chr6 102141699 102141880 -47375157 + (TA)n Simple_repeat Simple_repeat 1 178 0 2 1364 23 33 0 0 chr6 102143210 102143240 -47373797 + AT_rich Low_complexity Low_complexity 1 30 0 2 1364 749 250 72 19 chr6 102143269 102143586 -47373451 + MTE2b LTR MaLR 18 405 -14 2 1364 497 272 73 64 chr6 102143748 102143968 -47373069 + Lx8 LINE L1 7079 7300 -173 2 1364 375 298 24 24 chr6 102143964 102144091 -47372946 + Lx8 LINE L1 6812 6938 -535 2 1364 315 111 13 65 chr6 102144480 102144557 -47372480 + GA-rich Low_complexity Low_complexity 5 77 0 2 1364 378 0 0 0 chr6 102144590 102144632 -47372405 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1364 423 0 0 0 chr6 102144632 102144678 -47372359 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1364 350 259 9 0 chr6 102145419 102145535 -47371502 + CT-rich Low_complexity Low_complexity 4 120 0 2 1364 180 326 139 21 chr6 102145539 102145683 -47371354 - MIRb SINE MIR -16 252 92 2 1364 378 0 0 0 chr6 102145855 102145897 -47371140 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1364 23 0 0 0 chr6 102145970 102145993 -47371044 + AT_rich Low_complexity Low_complexity 1 23 0 2 1364 258 156 0 0 chr6 102147336 102147400 -47369637 + T-rich Low_complexity Low_complexity 1 64 0 2 1364 1122 259 152 18 chr6 102147415 102147870 -47369167 - Lx9 LINE L1 -1 7643 7128 2 1364 377 341 15 0 chr6 102149448 102149580 -47367457 - B1F2 SINE Alu -6 143 10 2 1364 1160 109 23 74 chr6 102149597 102149814 -47367223 + L1_Mus3 LINE L1 6427 6632 -6 2 1364 390 91 0 0 chr6 102149830 102149885 -47367152 + (TAA)n Simple_repeat Simple_repeat 3 57 0 2 1364 7151 144 29 2 chr6 102152014 102153745 -47363292 + Lx3C LINE L1 5181 6965 -11 2 1364 214 284 12 0 chr6 102155208 102155289 -47361748 + (CCA)n Simple_repeat Simple_repeat 1 82 0 2 1364 221 395 0 11 chr6 102155712 102155891 -47361146 + (CCA)n Simple_repeat Simple_repeat 2 178 0 2 1364 504 0 0 0 chr6 102159873 102159929 -47357108 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1364 552 294 56 51 chr6 102161022 102161219 -47355818 - B3A SINE B2 0 198 1 2 1364 234 0 0 0 chr6 102161436 102161462 -47355575 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 1364 284 333 21 10 chr6 102161883 102161980 -47355057 - PB1D10 SINE Alu -10 107 10 2 1364 1064 143 355 22 chr6 102162028 102162349 -47354688 + Lx LINE L1 6219 6646 -8 2 1364 22 0 0 0 chr6 102162357 102162379 -47354658 + AT_rich Low_complexity Low_complexity 1 22 0 2 1364 238 384 29 81 chr6 102162517 102162690 -47354347 - RMER30 DNA MER1_type -19 183 20 2 1364 356 301 37 69 chr6 102162717 102162906 -47354131 + Charlie12 DNA MER1_type 405 587 -2286 2 1364 2721 209 53 1 chr6 102163138 102163804 -47353233 + L1_Mur3 LINE L1 4948 5647 -233 2 1364 1325 294 59 42 chr6 102163804 102164269 -47352768 + Charlie12 DNA MER1_type 680 1142 -1731 2 1364 1837 35 0 17 chr6 102164269 102164499 -47352538 + L1Md_F2 LINE L1 6354 6579 -3 2 1364 1325 294 59 42 chr6 102164499 102164676 -47352361 + Charlie12 DNA MER1_type 1143 1333 -1540 2 1364 200 222 0 0 chr6 102164762 102164807 -47352230 + T-rich Low_complexity Low_complexity 1 45 0 2 1364 1405 101 10 0 chr6 102164813 102165011 -47352026 - L1_Mus2 LINE L1 -1 6565 6366 2 1364 3837 76 19 0 chr6 102165013 102165552 -47351485 + L1_Mus2 LINE L1 5627 6175 -391 2 1364 805 220 207 19 chr6 102165552 102165871 -47351166 + Charlie12 DNA MER1_type 1474 1852 -1021 2 1364 528 81 0 0 chr6 102166025 102166099 -47350938 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1364 316 276 9 9 chr6 102166136 102166242 -47350795 - Lx9 LINE L1 -220 7424 7319 2 1364 344 35 70 0 chr6 102166299 102166356 -47350681 + L1Md_F2 LINE L1 6521 6581 -1 2 1364 1878 281 50 90 chr6 102166369 102166603 -47350434 + Charlie12 DNA MER1_type 1934 2123 -750 2 1364 3486 73 2 0 chr6 102166603 102167057 -47349980 + L1_Mus2 LINE L1 6111 6565 -1 2 1364 1763 290 56 45 chr6 102167064 102167801 -47349236 + Charlie12 DNA MER1_type 2129 2873 0 2 1364 211 324 85 35 chr6 102168245 102168386 -47348651 - L2c LINE L2 -24 3363 3216 2 1364 418 356 29 88 chr6 102168742 102169016 -47348021 + MT2A LTR ERVL 127 384 -149 2 1364 3385 35 0 0 chr6 102169200 102169596 -47347441 + MTA_Mm LTR MaLR 1 396 0 2 1364 8857 44 16 0 chr6 102169596 102170675 -47346362 + MTA_Mm-int LTR MaLR 1 1096 -2 2 1364 3410 30 0 0 chr6 102170677 102171073 -47345964 + MTA_Mm LTR MaLR 1 396 0 2 1364 22 56 0 0 chr6 102171323 102171359 -47345678 + AT_rich Low_complexity Low_complexity 1 36 0 2 1364 297 212 26 26 chr6 102173068 102173184 -47343853 + (TTA)n Simple_repeat Simple_repeat 2 117 0 2 1364 348 285 118 72 chr6 102174053 102174318 -47342719 - MLT1G1 LTR MaLR -14 565 211 2 1364 22 35 0 0 chr6 102174762 102174791 -47342246 + AT_rich Low_complexity Low_complexity 1 29 0 2 1364 1405 302 3 3 chr6 102175209 102175564 -47341473 - MTE2b LTR MaLR -4 375 21 2 1364 723 138 24 0 chr6 102175682 102175805 -47341232 + B1_Mur3 SINE Alu 23 148 -1 2 1364 207 0 0 0 chr6 102175810 102175833 -47341204 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1364 4487 202 71 30 chr6 102175885 102176900 -47340137 + RMER1B Other Other 7 1062 -4 2 1364 583 342 117 34 chr6 102176992 102177078 -47339959 + L1MC1 LINE L1 2 94 -6414 2 1364 193 29 59 0 chr6 102177078 102177112 -47339925 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2 1364 583 342 117 34 chr6 102177112 102177799 -47339238 + L1MC1 LINE L1 95 841 -5667 2 1364 1483 52 18 23 chr6 102177799 102178017 -47339020 + L1_Mus3 LINE L1 6416 6632 -6 2 1364 583 296 371 10 chr6 102178017 102178223 -47338814 + L1MC1 LINE L1 842 1120 -5388 2 1364 590 362 25 63 chr6 102178259 102178545 -47338492 + B4A SINE B4 3 277 -15 2 1364 395 68 17 0 chr6 102178552 102178611 -47338426 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1364 441 285 96 48 chr6 102178622 102178976 -47338061 + L1MC1 LINE L1 1167 1537 -4971 2 1364 1430 57 26 0 chr6 102178978 102179172 -47337865 + L1Md_F3 LINE L1 6386 6584 0 2 1364 1007 81 74 18 chr6 102179358 102179377 -47337660 - L1_Mus1 LINE L1 0 6567 6549 2 1364 4222 39 0 6 chr6 102179377 102179893 -47337144 - L1Md_F2 LINE L1 -2 6580 6068 2 1364 1007 81 74 18 chr6 102179893 102180036 -47337001 - L1_Mus1 LINE L1 -19 6548 6397 2 1364 2643 283 55 55 chr6 102180837 102181612 -47335425 + L1MC1 LINE L1 2149 2938 -3383 2 1364 314 396 0 24 chr6 102181612 102181780 -47335257 + RSINE1 SINE B4 2 165 0 2 1364 2643 283 56 63 chr6 102181780 102182615 -47334422 + L1MC1 LINE L1 2939 3740 -2581 2 1364 6503 30 3 0 chr6 102182615 102183380 -47333657 + L1Md_T LINE L1 5816 6582 0 2 1364 2643 283 56 63 chr6 102183380 102183536 -47333501 + L1MC1 LINE L1 3741 3917 -2404 2 1364 1833 277 84 14 chr6 102183800 102184815 -47332222 + L1MC1 LINE L1 4555 5650 -869 2 1364 749 321 44 28 chr6 102184873 102185342 -47331695 + L1MC1 LINE L1 5754 6235 -284 2 1364 715 346 53 59 chr6 102185363 102185719 -47331318 + MTE2a LTR MaLR 3 356 -23 2 1364 340 357 77 6 chr6 102185733 102185902 -47331135 + MT2A LTR ERVL 220 400 -133 2 1364 585 322 135 13 chr6 102186140 102186615 -47330422 - Lx8 LINE L1 -4 7469 6937 2 1364 527 107 12 0 chr6 102187636 102187720 -47329317 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 1364 369 0 0 0 chr6 102188180 102188221 -47328816 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 2 1364 1094 83 0 0 chr6 102188221 102188365 -47328672 - B1_Mus1 SINE Alu -3 145 2 2 1364 21 0 0 0 chr6 102188929 102188950 -47328087 + AT_rich Low_complexity Low_complexity 1 21 0 2 1364 712 333 37 69 chr6 102190144 102190609 -47326428 - MLT1C LTR MaLR 0 467 18 2 1364 2120 153 92 5 chr6 102190995 102191376 -47325661 + L1_Mur2 LINE L1 5462 5875 -2 2 1364 277 324 35 26 chr6 102193361 102193475 -47323562 + MLT1I LTR MaLR 114 228 -183 2 1364 241 65 42 42 chr6 102193661 102193709 -47323328 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 2 1364 401 337 77 47 chr6 102193809 102194148 -47322889 + L2 LINE L2 2556 2904 -515 2 1364 31 44 0 0 chr6 102195452 102195497 -47321540 + AT_rich Low_complexity Low_complexity 1 45 0 2 1364 360 0 0 0 chr6 102195508 102195548 -47321489 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1364 1175 306 85 53 chr6 102196574 102197052 -47319985 + Lx8 LINE L1 6831 7329 -144 2 1364 356 318 87 39 chr6 102197052 102197258 -47319779 + B3 SINE B2 1 216 0 2 1364 1175 306 85 53 chr6 102197258 102197380 -47319657 + Lx8 LINE L1 7330 7449 -24 2 1364 685 249 101 0 chr6 102197451 102197640 -47319397 - B3 SINE B2 -5 211 4 2 1364 221 290 0 14 chr6 102197723 102197793 -47319244 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 1364 180 379 21 10 chr6 102201423 102201519 -47315518 + L4 LINE RTE 733 829 -1200 2 1364 3133 202 38 39 chr6 102202432 102203247 -47313790 + RMER13A LTR ERVK 103 908 0 2 1364 396 0 0 0 chr6 102203265 102203309 -47313728 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1364 936 299 77 63 chr6 102203879 102204383 -47312654 - Lx6 LINE L1 -31 7429 6919 2 1364 276 360 10 29 chr6 102205606 102205709 -47311328 - L2c LINE L2 -9 3378 3278 2 1364 190 339 117 17 chr6 102206221 102206341 -47310696 + L2b LINE L2 3229 3360 -15 2 1364 500 300 11 106 chr6 102206449 102206628 -47310409 + B3 SINE B2 2 163 -53 2 1364 182 37 37 0 chr6 102206655 102206682 -47310355 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1364 713 310 129 11 chr6 102206747 102207204 -47309833 + L1MA9 LINE L1 5769 6279 -33 2 1364 22 56 0 0 chr6 102208227 102208263 -47308774 + AT_rich Low_complexity Low_complexity 1 36 0 2 1364 2448 208 155 42 chr6 102209611 102210238 -47306799 + RMER13A LTR ERVK 1 698 -162 2 1364 25 0 0 0 chr6 102210598 102210623 -47306414 + AT_rich Low_complexity Low_complexity 1 25 0 2 1364 306 57 0 0 chr6 102212234 102212287 -47304750 - Lx LINE L1 -1 6653 6601 2 1364 460 319 17 116 chr6 102213844 102213996 -47303041 + RSINE1 SINE B4 3 146 -19 2 1364 333 0 0 0 chr6 102213996 102214033 -47303004 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1364 460 319 17 116 chr6 102214033 102214061 -47302976 + RSINE1 SINE B4 147 165 0 2 1364 867 294 112 20 chr6 102214141 102214488 -47302549 + MTE2b LTR MaLR 1 379 0 3 1364 190 320 0 0 chr6 102214561 102214611 -47302426 + MIRb SINE MIR 208 257 -11 3 1364 320 336 62 58 chr6 102214628 102214852 -47302185 - MIR SINE MIR -23 239 15 3 1364 1045 128 0 11 chr6 102215469 102215651 -47301386 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 3 1364 383 261 15 85 chr6 102217074 102217204 -47299833 - B1F1 SINE Alu 0 149 29 3 1364 1044 104 0 7 chr6 102218149 102218294 -47298743 - B1_Mus1 SINE Alu 0 148 5 3 1364 252 240 0 0 chr6 102218443 102218493 -47298544 + ORR1E LTR MaLR 1 50 -309 3 1364 231 325 100 0 chr6 102218623 102218703 -47298334 + MTEb LTR MaLR 252 339 -40 3 1364 393 22 0 0 chr6 102218740 102218786 -47298251 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1364 414 286 81 32 chr6 102218918 102219041 -47297996 - B4 SINE B4 -148 144 16 3 1364 2546 89 35 45 chr6 102221037 102221438 -47295599 - L1Md_F2 LINE L1 -12 6570 6174 3 1364 916 212 10 15 chr6 102221667 102221863 -47295174 + URR1B DNA MER1_type 31 225 0 3 1364 237 250 0 0 chr6 102222095 102222143 -47294894 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 3 1364 351 280 11 0 chr6 102223967 102224060 -47292977 - PB1D10 SINE Alu -2 115 22 3 1364 2563 318 98 23 chr6 102224064 102226248 -47290789 + L1M2 LINE L1 3248 5610 -690 3 1364 332 189 9 0 chr6 102226248 102226293 -47290744 + polypurine Low_complexity Low_complexity 1 46 0 3 1364 1193 96 0 6 chr6 102226293 102226472 -47290565 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 1364 332 189 9 0 chr6 102226472 102226532 -47290505 + GA-rich Low_complexity Low_complexity 47 106 0 3 1364 834 293 45 0 chr6 102227871 102228069 -47288968 - ID_B1 SINE B4 -17 207 1 3 1364 828 57 0 0 chr6 102228945 102229051 -47287986 + (TTCC)n Simple_repeat Simple_repeat 4 109 0 3 1364 631 256 115 29 chr6 102229321 102229599 -47287438 + L1MB1 LINE L1 5526 5827 -341 3 1364 699 295 4 47 chr6 102229705 102229923 -47287114 - B3A SINE B2 0 216 12 3 1364 2173 186 63 25 chr6 102230158 102230329 -47286708 + RLTR16 LTR ERVK 1 170 -335 3 1364 855 0 0 0 chr6 102230329 102230424 -47286613 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 3 1364 2173 186 63 25 chr6 102230424 102230649 -47286388 + RLTR16 LTR ERVK 171 401 -104 3 1364 315 0 0 0 chr6 102230649 102230684 -47286353 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1364 2173 186 63 25 chr6 102230684 102230761 -47286276 + RLTR16 LTR ERVK 402 491 -14 3 1364 270 233 40 14 chr6 102230758 102230832 -47286205 + RLTR16 LTR ERVK 430 505 0 3 1364 242 410 62 0 chr6 102232546 102232707 -47284330 + LTR16B1 LTR ERVL 122 292 -188 3 1364 306 0 0 0 chr6 102232895 102232929 -47284108 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1364 252 86 0 0 chr6 102233380 102233415 -47283622 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1364 631 84 4 6 chr6 102233745 102233850 -47283187 + B1_Mus1 SINE Alu 10 113 -7 3 1364 825 71 24 0 chr6 102233853 102233979 -47283058 + (GAA)n Simple_repeat Simple_repeat 2 130 0 3 1364 4873 163 144 35 chr6 102234042 102234925 -47282112 + RMER12 LTR ERVK 4 913 -409 3 1364 387 0 0 0 chr6 102234925 102234968 -47282069 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 1364 369 0 0 0 chr6 102234968 102235008 -47282029 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1364 4873 163 144 35 chr6 102235008 102235202 -47281835 + RMER12 LTR ERVK 914 1197 -125 3 1364 515 326 80 70 chr6 102235315 102235730 -47281307 + MLT1D LTR MaLR 6 424 -81 3 170 379 289 129 78 chr6 102235846 102236180 -47280857 + MLT1D LTR MaLR 155 505 0 3 1365 932 265 62 107 chr6 102236227 102236611 -47280426 - MTE2a LTR MaLR -12 367 1 3 1365 558 0 0 0 chr6 102238211 102238273 -47278764 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1365 396 0 0 0 chr6 102238273 102238316 -47278721 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1365 234 150 0 0 chr6 102238798 102238838 -47278199 + (TTG)n Simple_repeat Simple_repeat 2 41 0 3 1365 212 213 16 0 chr6 102238842 102238903 -47278134 + CT-rich Low_complexity Low_complexity 2 63 0 3 1365 523 285 135 40 chr6 102239495 102239747 -47277290 - MTEb LTR MaLR 0 379 104 3 1365 393 75 0 0 chr6 102240710 102240763 -47276274 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1365 324 70 0 0 chr6 102240897 102240940 -47276097 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1365 378 0 0 0 chr6 102240963 102241005 -47276032 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1365 1837 140 9 75 chr6 102241009 102241357 -47275680 + ORR1A4 LTR MaLR 5 329 0 3 1365 376 262 153 29 chr6 102242098 102242412 -47274625 - L1MA7 LINE L1 -7 6284 5932 3 1365 3187 136 57 27 chr6 102242494 102243053 -47273984 + Lx LINE L1 6078 6653 -1 3 1365 252 0 0 0 chr6 102243070 102243098 -47273939 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1365 325 319 107 71 chr6 102243227 102243396 -47273641 - B3A SINE B2 -19 179 5 3 1365 195 42 0 0 chr6 102243688 102243712 -47273325 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1365 2230 239 65 8 chr6 102243712 102244218 -47272819 - Lx5 LINE L1 -19 7031 6497 3 1365 495 0 0 0 chr6 102246454 102246509 -47270528 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 3 1365 388 341 0 55 chr6 102246697 102246843 -47270194 + RSINE1 SINE B4 3 140 -25 3 1365 22 70 0 0 chr6 102246913 102246956 -47270081 + AT_rich Low_complexity Low_complexity 1 43 0 3 1365 2395 154 44 2 chr6 102247053 102247488 -47269549 + RLTR11B LTR ERVK 1 453 0 3 1365 246 256 63 79 chr6 102247684 102247811 -47269226 + MIR SINE MIR 37 161 -101 3 1365 561 244 183 0 chr6 102247848 102248024 -47269013 - MER2 DNA MER2_type 0 345 137 3 1365 708 311 202 48 chr6 102248024 102248376 -47268661 - MER47B DNA MER2_type 0 418 13 3 1365 269 312 115 0 chr6 102248412 102248508 -47268529 - MER2 DNA MER2_type -235 110 4 3 1365 307 314 23 0 chr6 102249671 102249768 -47267269 + Lx8 LINE L1 7190 7277 -196 3 1365 357 24 0 0 chr6 102249774 102249816 -47267221 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1365 508 324 64 42 chr6 102250081 102250345 -47266692 + B4A SINE B4 1 270 -22 3 1365 756 224 8 97 chr6 102250445 102250682 -47266355 - Lx5 LINE L1 -718 6332 6117 3 1365 2903 229 39 28 chr6 102250683 102251354 -47265683 + Lx5 LINE L1 6363 7040 -10 3 1365 24 67 0 0 chr6 102251645 102251690 -47265347 + AT_rich Low_complexity Low_complexity 1 45 0 3 1365 1315 97 38 0 chr6 102253168 102253353 -47263684 + B2_Mm2 SINE B2 1 192 -3 3 1365 450 0 0 0 chr6 102253356 102253406 -47263631 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1365 225 0 0 0 chr6 102253538 102253563 -47263474 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 1365 182 171 0 24 chr6 102253934 102253976 -47263061 + GA-rich Low_complexity Low_complexity 4 44 0 3 1365 204 40 0 0 chr6 102254238 102254263 -47262774 + (TAA)n Simple_repeat Simple_repeat 3 27 0 3 1365 1095 279 80 31 chr6 102254855 102255206 -47261831 - MTE2b LTR MaLR -8 371 4 3 1365 2023 328 93 24 chr6 102256166 102257290 -47259747 - Lx8 LINE L1 -33 7440 6239 3 1365 270 0 0 0 chr6 102257341 102257371 -47259666 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1365 25 31 0 0 chr6 102257371 102257403 -47259634 + AT_rich Low_complexity Low_complexity 1 32 0 3 1365 234 0 0 0 chr6 102257461 102257487 -47259550 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1365 1460 203 88 114 chr6 102257855 102258345 -47258692 + RMER20B LTR ERVK 39 515 -112 3 1365 26 30 0 0 chr6 102259464 102259497 -47257540 + AT_rich Low_complexity Low_complexity 1 33 0 3 1365 1159 101 10 72 chr6 102259687 102259880 -47257157 - B2_Mm1t SINE B2 -10 183 3 3 1365 189 196 0 0 chr6 102260021 102260067 -47256970 + (ATG)n Simple_repeat Simple_repeat 3 48 0 3 1365 440 59 15 0 chr6 102260889 102260957 -47256080 + (CAAAA)n Simple_repeat Simple_repeat 1 69 0 3 1365 6717 65 1 24 chr6 102260957 102261395 -47255642 + L1_Mus2 LINE L1 5693 6130 -436 3 1365 6172 59 26 22 chr6 102261395 102262210 -47254827 + RLTR13B2 LTR ERVK 1 818 -4 3 1365 6717 65 1 24 chr6 102262210 102262665 -47254372 + L1_Mus2 LINE L1 6131 6566 0 3 1365 216 0 0 0 chr6 102262694 102262718 -47254319 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1365 534 308 0 0 chr6 102262994 102263124 -47253913 + RSINE1 SINE B4 2 131 -34 3 1365 378 0 0 0 chr6 102263127 102263169 -47253868 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1365 230 271 0 48 chr6 102263870 102263932 -47253105 - MIRc SINE MIR -117 151 93 3 1365 1053 286 91 18 chr6 102264474 102264816 -47252221 + MTEa LTR MaLR 6 372 -7 3 1365 643 336 21 21 chr6 102265032 102265321 -47251716 + B4 SINE B4 2 290 -2 3 1365 571 180 128 0 chr6 102266747 102266919 -47250118 + Lx9 LINE L1 7431 7624 -20 3 1365 29 47 0 0 chr6 102266924 102266967 -47250070 + AT_rich Low_complexity Low_complexity 1 43 0 3 1365 338 100 17 0 chr6 102267217 102267277 -47249760 + (TTTTTG)n Simple_repeat Simple_repeat 1 61 0 3 1365 573 15 0 0 chr6 102267358 102267424 -47249613 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1365 23 0 0 0 chr6 102268340 102268363 -47248674 + AT_rich Low_complexity Low_complexity 1 23 0 3 1365 427 243 13 45 chr6 102268874 102269029 -47248008 - Lx7 LINE L1 -138 7558 7409 3 1365 815 285 60 49 chr6 102270682 102270966 -47246071 + B4 SINE B4 2 288 -4 3 1365 673 324 64 44 chr6 102271147 102271537 -47245500 + MER57D LTR ERV1 13 410 -1 3 1365 200 259 34 17 chr6 102273118 102273177 -47243860 + CT-rich Low_complexity Low_complexity 3 62 0 3 1365 3417 201 55 18 chr6 102273206 102273914 -47243123 - Lx5 LINE L1 -3 7047 6314 3 1365 224 282 24 0 chr6 102274693 102274778 -47242259 + (TCTG)n Simple_repeat Simple_repeat 4 90 0 3 1365 266 207 0 0 chr6 102274713 102274771 -47242266 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 3 1365 312 274 0 0 chr6 102274786 102274859 -47242178 - ID4_ SINE ID -4 79 7 3 1365 229 304 53 21 chr6 102274907 102275001 -47242036 - B1F SINE Alu -35 114 18 4 1365 241 165 19 93 chr6 102275109 102275216 -47241821 + (TATAA)n Simple_repeat Simple_repeat 1 99 0 4 1365 356 295 93 19 chr6 102275928 102276035 -47241002 - B3A SINE B2 -82 116 2 4 1365 397 409 13 0 chr6 102276167 102276321 -47240716 + ID_B1 SINE B4 3 158 -66 4 1365 1202 112 27 5 chr6 102276467 102276655 -47240382 - B2_Mm2 SINE B2 -3 192 1 4 1365 507 215 0 0 chr6 102278028 102278149 -47238888 + CT-rich Low_complexity Low_complexity 2 122 0 4 1365 429 90 0 0 chr6 102278150 102278217 -47238820 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1365 441 81 0 0 chr6 102278217 102278279 -47238758 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1365 3728 39 0 0 chr6 102278662 102279125 -47237912 - L1Md_F2 LINE L1 -243 6339 5877 4 1365 3079 39 41 0 chr6 102279126 102279513 -47237524 + L1Md_F2 LINE L1 6178 6580 -2 4 1365 492 86 0 0 chr6 102279555 102279625 -47237412 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1365 1978 66 0 75 chr6 102280714 102281009 -47236028 + L1_Mus2 LINE L1 6294 6566 0 4 1365 347 162 0 0 chr6 102283246 102283314 -47233723 - Lx2 LINE L1 -3 7005 6938 4 1365 1464 166 92 0 chr6 102283314 102283597 -47233440 - Lx2 LINE L1 -163 6834 6526 4 1365 302 260 144 16 chr6 102284649 102284774 -47232263 + MER5A1 DNA MER1_type 18 158 -8 4 1365 1566 297 30 35 chr6 102285135 102285766 -47231271 + Lx7 LINE L1 6193 6820 -876 4 1365 22 0 0 0 chr6 102288236 102288258 -47228779 + AT_rich Low_complexity Low_complexity 1 22 0 4 1365 208 211 0 0 chr6 102288403 102288441 -47228596 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1365 258 32 0 0 chr6 102288455 102288486 -47228551 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1365 495 285 37 31 chr6 102289973 102290136 -47226901 + B3 SINE B2 48 211 -5 4 1365 498 220 23 0 chr6 102290261 102290393 -47226644 - L1MD LINE L1 -894 5465 5331 4 1365 628 171 0 14 chr6 102290553 102290695 -47226342 + GA-rich Low_complexity Low_complexity 2 141 0 4 1365 1059 229 72 92 chr6 102290695 102291099 -47225938 - RMER10A LTR ERVL -1 441 46 4 1365 565 150 0 0 chr6 102291121 102291234 -47225803 - L1_Mus4 LINE L1 0 6636 6524 4 1365 3006 203 15 15 chr6 102291238 102291833 -47225204 - RMER17B LTR ERVK -2 956 362 4 1365 8821 94 19 2 chr6 102291833 102293906 -47223131 + L1_Mus2 LINE L1 4465 6566 0 4 1365 3221 80 14 14 chr6 102294314 102294759 -47222278 - L1Md_F2 LINE L1 0 6582 6138 4 1365 4314 63 2 0 chr6 102294759 102295332 -47221705 + L1Md_F2 LINE L1 5593 6166 -416 4 1365 350 69 17 0 chr6 102295442 102295500 -47221537 + (TTTTG)n Simple_repeat Simple_repeat 1 59 0 4 1365 1104 88 0 13 chr6 102295500 102295649 -47221388 - B1_Mm SINE Alu 0 147 1 4 1365 192 77 0 0 chr6 102295828 102295854 -47221183 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1365 267 337 11 11 chr6 102296208 102296301 -47220736 - PB1 SINE Alu -30 97 5 4 1365 8464 8 2 0 chr6 102297476 102298533 -47218504 - L1Md_T LINE L1 0 6582 5524 4 1365 300 0 0 0 chr6 102298539 102298576 -47218461 + tRNA-Glu-GAA tRNA tRNA 1 37 -38 4 1365 6791 86 15 0 chr6 102298576 102299798 -47217239 - L1_Mus2 LINE L1 -23 6543 5309 4 1365 389 257 80 35 chr6 102300323 102300448 -47216589 + PB1D10 SINE Alu 1 120 -7 4 1365 3772 123 28 10 chr6 102300555 102301154 -47215883 - Lx2 LINE L1 0 6997 6388 4 1365 2841 137 93 6 chr6 102301157 102301672 -47215365 + Lx2 LINE L1 5836 6395 -602 4 1365 6458 63 13 5 chr6 102301692 102302533 -47214504 + L1Md_F2 LINE L1 5723 6570 -12 4 1365 189 346 96 22 chr6 102302867 102303003 -47214034 + MIRb SINE MIR 114 259 -9 4 1365 223 267 27 0 chr6 102303874 102303949 -47213088 + (TATG)n Simple_repeat Simple_repeat 3 79 0 4 1365 2893 208 30 8 chr6 102303993 102304598 -47212439 + RLTR17 LTR ERVK 1 618 -74 4 1365 688 123 189 0 chr6 102304770 102304892 -47212145 - B1_Mus2 SINE Alu -2 145 1 4 1365 1031 316 28 26 chr6 102305010 102305438 -47211599 - Lx9 LINE L1 -452 7192 6764 4 1365 2970 112 99 35 chr6 102305486 102306002 -47211035 - Lx LINE L1 -7 6647 6099 4 1365 347 349 66 70 chr6 102306019 102306039 -47210998 - B4 SINE B4 -65 227 208 4 1365 1053 44 0 0 chr6 102306039 102306174 -47210863 + (TC)n Simple_repeat Simple_repeat 2 136 0 4 1365 347 349 66 70 chr6 102306174 102306381 -47210656 - B4 SINE B4 -85 207 3 4 1365 519 314 46 41 chr6 102306391 102306587 -47210450 - B4A SINE B4 -86 206 10 4 1365 405 0 0 0 chr6 102307471 102307516 -47209521 + (CCA)n Simple_repeat Simple_repeat 3 47 0 4 1365 581 300 53 0 chr6 102308500 102308650 -47208387 + RSINE1 SINE B4 2 159 -6 4 1365 251 143 0 31 chr6 102308691 102308756 -47208281 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 4 1365 1550 318 25 16 chr6 102308788 102309423 -47207614 - Lx8 LINE L1 -581 6892 6252 4 1365 22 35 0 0 chr6 102309461 102309490 -47207547 + AT_rich Low_complexity Low_complexity 1 29 0 4 1365 482 298 7 0 chr6 102309908 102310049 -47206988 + Lx8 LINE L1 6969 7110 -363 4 1365 351 0 0 0 chr6 102310206 102310245 -47206792 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1365 279 173 24 12 chr6 102310346 102310428 -47206609 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 4 1365 313 295 22 109 chr6 102310508 102310645 -47206392 + B4 SINE B4 2 126 -166 4 1365 23 0 0 0 chr6 102310883 102310906 -47206131 + AT_rich Low_complexity Low_complexity 1 23 0 4 1365 213 65 0 0 chr6 102311350 102311381 -47205656 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 4 1365 282 336 38 8 chr6 102311389 102311521 -47205516 + MIRc SINE MIR 48 183 -85 4 1365 651 195 15 54 chr6 102311688 102311818 -47205219 + B1_Mus2 SINE Alu 2 126 -23 4 1365 591 216 9 0 chr6 102312162 102312278 -47204759 - RSINE1 SINE B4 -41 124 8 4 1365 693 66 0 0 chr6 102312410 102312501 -47204536 + (TG)n Simple_repeat Simple_repeat 2 92 0 4 1365 231 302 0 0 chr6 102312528 102312581 -47204456 + Charlie5 DNA MER1_type 7 59 -2565 4 1365 447 19 0 0 chr6 102312841 102312893 -47204144 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1365 1163 75 7 0 chr6 102313097 102313243 -47203794 + B1_Mus1 SINE Alu 1 147 -1 4 1365 505 305 79 125 chr6 102315562 102315955 -47201082 - MTEb LTR MaLR -4 375 1 4 1365 620 332 51 40 chr6 102316096 102316369 -47200668 - B4A SINE B4 -5 287 12 4 1365 488 30 0 15 chr6 102316646 102316713 -47200324 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1365 723 180 214 6 chr6 102317442 102317615 -47199422 + B3 SINE B2 2 210 -6 4 1365 26 50 0 0 chr6 102317735 102317775 -47199262 + AT_rich Low_complexity Low_complexity 1 40 0 4 1365 182 191 21 0 chr6 102317781 102317828 -47199209 + GA-rich Low_complexity Low_complexity 3 50 0 4 1365 207 88 0 0 chr6 102317885 102317919 -47199118 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 4 1365 202 303 63 22 chr6 102318004 102318167 -47198870 - MER5A DNA MER1_type -3 186 1 4 1365 1006 133 153 0 chr6 102318297 102318493 -47198544 + URR1A DNA MER1_type 1 226 0 4 1365 25 0 0 0 chr6 102318521 102318546 -47198491 + AT_rich Low_complexity Low_complexity 1 25 0 4 1365 810 281 34 40 chr6 102318999 102319070 -47197967 + Lx8 LINE L1 6815 6884 -589 4 1365 1490 30 15 39 chr6 102319070 102319275 -47197762 - L1Md_F3 LINE L1 0 6584 6385 4 1365 810 281 34 40 chr6 102319275 102319552 -47197485 + Lx8 LINE L1 6885 7161 -312 4 1365 198 254 15 31 chr6 102320910 102320975 -47196062 + MIR SINE MIR 81 144 -64 4 1365 324 64 0 0 chr6 102321851 102321898 -47195139 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 4 1365 471 324 111 19 chr6 102322431 102322692 -47194345 + Cheshire DNA MER1_type 1 285 -2135 4 1365 654 319 43 80 chr6 102322724 102322877 -47194160 + B4 SINE B4 2 160 -132 4 1365 4371 102 32 12 chr6 102322877 102323531 -47193506 + L1_Mus4 LINE L1 5968 6634 -2 4 1365 198 0 0 0 chr6 102323534 102323556 -47193481 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1365 654 319 43 80 chr6 102323556 102323698 -47193339 + B4 SINE B4 161 290 -2 4 1365 777 31 0 0 chr6 102323727 102323823 -47193214 + (GGGAGA)n Simple_repeat Simple_repeat 3 98 0 4 1365 357 290 62 31 chr6 102323834 102323962 -47193075 + Lx8 LINE L1 7199 7330 -143 4 1365 317 343 84 53 chr6 102324069 102324294 -47192743 + L1ME1 LINE L1 5896 6127 -52 4 1365 506 325 63 34 chr6 102324735 102324942 -47192095 + B3A SINE B2 3 215 -1 4 1365 435 314 95 25 chr6 102324955 102325169 -47191868 - B3A SINE B2 -1 215 2 4 1365 247 253 53 0 chr6 102325842 102325917 -47191120 - L1MD LINE L1 -1018 5128 5050 4 1365 648 250 37 37 chr6 102326153 102326369 -47190668 + B3 SINE B2 1 216 0 4 1365 293 275 0 0 chr6 102326784 102326875 -47190162 - L1MD LINE L1 -1185 4961 4871 4 1365 230 333 0 0 chr6 102327089 102327161 -47189876 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1365 315 322 102 34 chr6 102327248 102327454 -47189583 - B4 SINE B4 -70 222 3 4 1365 330 277 29 65 chr6 102327459 102327598 -47189439 - L1MD LINE L1 -1479 4667 4534 4 1365 24 32 0 0 chr6 102327607 102327638 -47189399 + AT_rich Low_complexity Low_complexity 1 31 0 4 1365 379 209 38 28 chr6 102327724 102328020 -47189017 + (TA)n Simple_repeat Simple_repeat 1 299 0 4 1365 519 96 0 0 chr6 102328551 102328634 -47188403 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1365 601 351 5 5 chr6 102328635 102328821 -47188216 - B3 SINE B2 -29 187 2 4 1365 532 329 66 59 chr6 102328825 102329267 -47187770 - L1M5 LINE L1 -2227 3919 3475 4 1365 330 255 36 56 chr6 102329385 102329580 -47187457 - L1MD LINE L1 -2796 3350 3160 4 1365 31382 6 0 0 chr6 102329585 102335958 -47181079 - L1Md_A LINE L1 0 6582 208 4 1365 1198 48 7 0 chr6 102336665 102336812 -47180225 + B1_Mus1 SINE Alu 1 148 0 4 1365 207 0 0 0 chr6 102336812 102336835 -47180202 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 4 1365 198 0 0 0 chr6 102337046 102337068 -47179969 + (TTTTTG)n Simple_repeat Simple_repeat 5 26 0 4 1365 243 0 0 0 chr6 102337153 102337180 -47179857 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1365 598 297 24 0 chr6 102337562 102337727 -47179310 - B3 SINE B2 -46 170 2 4 1365 295 98 33 0 chr6 102339929 102339990 -47177047 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 4 1365 1178 261 61 43 chr6 102341097 102341490 -47175547 + MTD LTR MaLR 6 405 -14 5 1365 4958 42 6 6 chr6 102342234 102342855 -47174182 - L1Md_F2 LINE L1 -3 6579 5959 5 1365 1062 38 0 0 chr6 102342855 102342986 -47174051 + L1Md_F2 LINE L1 5831 5961 -623 5 1365 218 304 42 42 chr6 102344389 102344461 -47172576 + B4A SINE B4 71 142 -150 5 1365 216 67 0 0 chr6 102346076 102346106 -47170931 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 5 1365 22 70 0 0 chr6 102346721 102346764 -47170273 + AT_rich Low_complexity Low_complexity 1 43 0 5 1365 576 307 33 38 chr6 102346997 102347210 -47169827 + MTE2b LTR MaLR 168 379 0 5 1365 4135 149 18 106 chr6 102347535 102348526 -47168511 - RMER17A2 LTR ERVK -2 904 1 5 1365 23 68 0 0 chr6 102348917 102348961 -47168076 + AT_rich Low_complexity Low_complexity 1 44 0 5 1365 435 38 0 0 chr6 102349624 102349677 -47167360 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1365 361 297 20 10 chr6 102349729 102349831 -47167206 + B1F SINE Alu 11 113 -36 5 1365 23 33 0 0 chr6 102350279 102350309 -47166728 + AT_rich Low_complexity Low_complexity 1 30 0 5 1365 249 358 0 0 chr6 102350707 102350788 -47166249 - L2b LINE L2 -1 3374 3294 5 1365 195 42 0 0 chr6 102351104 102351128 -47165909 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5 1365 291 28 0 0 chr6 102351134 102351170 -47165867 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1365 1760 138 25 28 chr6 102352112 102352433 -47164604 + RLTR31_Mm LTR ERVK 1 320 -241 5 1365 8258 108 4 17 chr6 102352434 102353954 -47163083 + L1_Mus3 LINE L1 4577 6072 -566 5 1365 736 197 0 7 chr6 102353954 102354097 -47162940 - RLTR26 LTR ERVK 0 642 501 5 1365 2970 142 6 49 chr6 102354083 102354610 -47162427 - RLTR26 LTR ERVK -99 543 40 5 1365 3287 93 13 2 chr6 102354610 102355074 -47161963 + L1_Mus3 LINE L1 6163 6631 -7 5 1365 481 222 18 58 chr6 102355086 102355276 -47161761 + RLTR31_Mm LTR ERVK 310 484 -69 5 1365 423 348 24 12 chr6 102355352 102355493 -47161544 - MER44B DNA MER2_type -337 213 70 5 1365 183 42 0 0 chr6 102355493 102355517 -47161520 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1365 423 348 24 12 chr6 102355517 102355541 -47161496 - MER44B DNA MER2_type -481 69 46 5 1365 790 346 12 38 chr6 102355747 102356092 -47160945 - MER82 DNA MER2_type -112 541 206 5 1365 254 367 109 22 chr6 102356990 102357174 -47159863 - MIR SINE MIR -36 226 27 5 1365 962 301 23 40 chr6 102357341 102357645 -47159392 - MTE2a LTR MaLR -23 356 58 5 1365 362 122 62 62 chr6 102358981 102359077 -47157960 + L1Md_A LINE L1 6486 6581 -1 5 1365 227 300 0 0 chr6 102359090 102359135 -47157902 + B4 SINE B4 1 45 -247 5 1365 1266 203 199 0 chr6 102359135 102359416 -47157621 + ORR1D1 LTR MaLR 1 337 -37 5 1365 351 314 60 7 chr6 102359662 102359815 -47157222 + B3 SINE B2 23 190 -8 5 1365 597 64 0 0 chr6 102359821 102359899 -47157138 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1365 531 275 43 39 chr6 102360549 102360757 -47156280 + Lx8 LINE L1 7167 7375 -98 5 1365 270 0 0 0 chr6 102360824 102360854 -47156183 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1365 288 0 0 0 chr6 102361436 102361468 -47155569 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1365 32053 77 4 7 chr6 102361988 102366861 -47150176 + L1Md_F2 LINE L1 388 5234 -649 5 1365 189 0 0 0 chr6 102366861 102366882 -47150155 + (TA)n Simple_repeat Simple_repeat 1 21 0 5 1365 32053 73 4 5 chr6 102366882 102367222 -47149815 + L1Md_F2 LINE L1 5235 5584 -299 5 1366 7926 52 1 1 chr6 102367234 102368216 -47148821 + L1Md_F2 LINE L1 5587 6568 -14 5 1366 360 0 0 0 chr6 102368217 102368257 -47148780 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1366 391 266 9 18 chr6 102368816 102368927 -47148110 + MT2A LTR ERVL 74 183 -350 5 1366 458 189 94 0 chr6 102368952 102369058 -47147979 - Lx4A LINE L1 -1 7057 6942 5 1366 640 233 22 8 chr6 102369146 102369280 -47147757 - RMER10B LTR ERVL -211 187 52 5 1366 3814 134 22 10 chr6 102369280 102369907 -47147130 + Lx2 LINE L1 6362 6996 -1 5 1366 512 244 147 0 chr6 102369927 102370083 -47146954 + MT2A LTR ERVL 347 525 -8 5 1366 426 245 0 30 chr6 102370498 102370599 -47146438 + PB1D10 SINE Alu 18 115 -2 5 1366 455 38 0 0 chr6 102370599 102370652 -47146385 + L1Md_F3 LINE L1 5534 5586 -297 5 1366 7994 45 10 1 chr6 102370653 102371641 -47145396 + L1Md_F3 LINE L1 5588 6584 0 5 1366 192 77 0 0 chr6 102373248 102373274 -47143763 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1366 588 95 0 0 chr6 102374273 102374357 -47142680 + (GGGA)n Simple_repeat Simple_repeat 4 87 0 5 1366 351 0 0 0 chr6 102374795 102374834 -47142203 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1366 492 18 0 0 chr6 102376481 102376538 -47140499 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1366 198 331 80 73 chr6 102377118 102377268 -47139769 - L3 LINE CR1 -3505 984 834 5 1366 670 278 96 48 chr6 102378128 102378400 -47138637 - B4 SINE B4 -6 286 2 5 1366 306 0 0 0 chr6 102378782 102378816 -47138221 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1366 664 305 9 2 chr6 102379284 102379482 -47137555 + B3A SINE B2 1 201 -15 5 1366 389 337 58 21 chr6 102379641 102379829 -47137208 - RMER30 DNA MER1_type -6 196 2 5 1366 333 118 0 0 chr6 102380809 102380860 -47136177 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1366 237 33 0 0 chr6 102381916 102381946 -47135091 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1366 3611 78 14 12 chr6 102383811 102384304 -47132733 + L1_Mus1 LINE L1 6074 6567 0 5 1366 23 0 0 0 chr6 102384304 102384327 -47132710 + AT_rich Low_complexity Low_complexity 1 23 0 5 1366 348 323 20 0 chr6 102384570 102384669 -47132368 + MER3 DNA MER1_type 31 131 -78 5 1366 192 97 0 0 chr6 102384681 102384712 -47132325 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1366 369 0 0 0 chr6 102387162 102387203 -47129834 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1366 26 0 0 0 chr6 102387302 102387328 -47129709 + AT_rich Low_complexity Low_complexity 1 26 0 5 1366 214 123 0 34 chr6 102387397 102387456 -47129581 + A-rich Low_complexity Low_complexity 2 58 0 5 1366 1324 246 70 28 chr6 102389231 102389586 -47127451 - ORR1D2 LTR MaLR 0 370 1 5 1366 3206 46 5 10 chr6 102390043 102390441 -47126596 + MTA_Mm LTR MaLR 1 396 0 5 1366 243 257 136 111 chr6 102390578 102390740 -47126297 + Tigger5 DNA MER2_type 2241 2406 0 5 1366 5904 133 43 13 chr6 102392362 102393940 -47123097 + L1_Mur1 LINE L1 215 1845 -4041 5 1366 268 333 11 11 chr6 102394066 102394154 -47122883 - MLT1C LTR MaLR -77 390 303 5 1366 559 154 17 0 chr6 102394639 102394756 -47122281 + (TA)n Simple_repeat Simple_repeat 2 120 0 5 1366 221 197 16 0 chr6 102395606 102395667 -47121370 + GA-rich Low_complexity Low_complexity 6 67 0 5 1366 271 315 21 32 chr6 102396194 102396289 -47120748 - B4A SINE B4 -7 285 192 5 1366 215 303 76 0 chr6 102397100 102397166 -47119871 - B2_Mm1t SINE B2 -120 73 3 5 1366 21 57 0 0 chr6 102397661 102397696 -47119341 + AT_rich Low_complexity Low_complexity 1 35 0 5 1366 22 35 0 0 chr6 102398174 102398203 -47118834 + AT_rich Low_complexity Low_complexity 1 29 0 5 1366 844 262 4 70 chr6 102399100 102399155 -47117882 - B3 SINE B2 0 216 163 5 1366 4995 127 95 12 chr6 102399155 102400040 -47116997 + RMER17B LTR ERVK 1 958 0 5 1366 844 262 4 70 chr6 102400040 102400214 -47116823 - B3 SINE B2 -54 162 3 5 1366 22 0 0 0 chr6 102400874 102400896 -47116141 + AT_rich Low_complexity Low_complexity 1 22 0 5 1366 290 313 83 68 chr6 102400976 102401168 -47115869 + MER58B DNA MER1_type 117 311 -30 5 1366 186 43 0 0 chr6 102403233 102403256 -47113781 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1366 808 278 31 31 chr6 102403388 102403741 -47113296 + L1M2 LINE L1 2626 2978 -3165 5 1366 300 284 89 65 chr6 102403958 102404082 -47112955 + RMER30 DNA MER1_type 7 133 -69 5 1366 405 0 0 0 chr6 102404374 102404419 -47112618 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1366 213 241 0 18 chr6 102404967 102405022 -47112015 + (CATA)n Simple_repeat Simple_repeat 2 55 0 5 1366 378 0 0 0 chr6 102405619 102405661 -47111376 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 5 1366 270 173 0 19 chr6 102405684 102405737 -47111300 - B2_Mm2 SINE B2 -97 98 47 5 1366 1128 110 35 0 chr6 102405803 102405976 -47111061 - B2_Mm1t SINE B2 -14 179 1 5 1366 442 286 166 33 chr6 102406239 102406420 -47110617 + RMER15 LTR ERVL 355 559 -16 5 1366 1912 206 4 137 chr6 102406712 102407251 -47109786 - RMER1B Other Other -54 1012 546 5 1366 434 294 0 9 chr6 102407294 102407404 -47109633 - MER33 DNA MER1_type -210 114 6 5 1366 370 250 108 52 chr6 102407595 102407789 -47109248 + L1MA8 LINE L1 5846 6050 -241 5 1366 235 350 0 0 chr6 102407931 102407942 -47109095 + ID4_ SINE ID 3 36 -47 5 1366 240 280 0 0 chr6 102407942 102407992 -47109045 + tRNA-Ala-GCA tRNA tRNA 8 57 -18 5 1366 195 184 0 0 chr6 102409218 102409256 -47107781 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1366 186 128 0 0 chr6 102409945 102409984 -47107053 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1366 1209 41 0 0 chr6 102409984 102410130 -47106907 - B1_Mus2 SINE Alu 0 147 2 5 1366 1546 252 14 53 chr6 102410190 102410604 -47106433 + RMER10B LTR ERVL 1 398 0 5 1366 810 58 0 0 chr6 102411257 102411361 -47105676 + (GAA)n Simple_repeat Simple_repeat 2 105 0 5 1366 1723 194 79 3 chr6 102411491 102411847 -47105190 - ORR1B1 LTR MaLR -2 392 10 5 1366 378 0 0 0 chr6 102412380 102412422 -47104615 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 5 1366 26 50 0 0 chr6 102412763 102412803 -47104234 + AT_rich Low_complexity Low_complexity 1 40 0 5 1366 1032 78 0 41 chr6 102413268 102413414 -47103623 + B1_Mus1 SINE Alu 2 141 -7 5 1366 374 305 77 31 chr6 102413636 102413832 -47103205 + Lx9 LINE L1 7299 7503 -141 5 1366 26 101 0 0 chr6 102413915 102414004 -47103033 + AT_rich Low_complexity Low_complexity 1 89 0 5 1366 25 51 0 0 chr6 102414066 102414105 -47102932 + AT_rich Low_complexity Low_complexity 1 39 0 5 1366 407 289 165 0 chr6 102414342 102414463 -47102574 + ID_B1 SINE B4 82 222 -2 5 1366 1242 253 38 38 chr6 102416140 102416678 -47100359 + Lx9 LINE L1 5544 6101 -1543 6 1366 1265 319 68 37 chr6 102416789 102416951 -47100086 + Lx9 LINE L1 6521 6684 -960 6 1366 830 239 274 10 chr6 102416951 102417247 -47099790 + ORR1D1 LTR MaLR 1 374 0 6 1366 1265 319 68 37 chr6 102417247 102417761 -47099276 + Lx9 LINE L1 6685 7218 -426 6 1366 368 40 20 0 chr6 102417761 102417811 -47099226 + (TAAAA)n Simple_repeat Simple_repeat 1 51 0 6 1366 836 242 54 50 chr6 102417856 102418117 -47098920 + RLTR12B LTR ERVK 47 308 -220 6 1366 653 290 48 40 chr6 102418113 102418386 -47098651 + RLTR12B LTR ERVK 245 519 -9 6 1366 5645 137 82 51 chr6 102418679 102419737 -47097300 + Lx2B LINE L1 5904 6994 -6 6 1366 423 119 0 0 chr6 102420900 102420967 -47096070 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1366 192 77 0 0 chr6 102421219 102421245 -47095792 + (CAT)n Simple_repeat Simple_repeat 3 28 0 6 1366 870 215 129 5 chr6 102421723 102421924 -47095113 - URR1A DNA MER1_type 0 226 1 6 1366 186 43 0 0 chr6 102421967 102421990 -47095047 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1366 1364 117 0 0 chr6 102422061 102422266 -47094771 - Lx2 LINE L1 -1 6996 6792 6 1366 468 233 50 0 chr6 102422276 102422396 -47094641 - Lx3C LINE L1 -9 6967 6842 6 1366 209 189 0 0 chr6 102422753 102422790 -47094247 + (CATA)n Simple_repeat Simple_repeat 3 39 0 6 1366 428 319 150 54 chr6 102422997 102423497 -47093540 - Charlie24 DNA MER1_type -1564 886 339 6 1366 270 323 67 41 chr6 102423922 102424116 -47092921 - Charlie24 DNA MER1_type -2187 263 65 6 1366 309 298 59 65 chr6 102424116 102424285 -47092752 - MIR SINE MIR -4 258 91 6 1366 4854 81 27 6 chr6 102424534 102425227 -47091810 - L1_Mus3 LINE L1 -6 6632 5925 6 1366 11380 156 11 10 chr6 102425227 102427297 -47089740 - L1_Mur2 LINE L1 -579 5298 3227 6 1366 779 258 37 55 chr6 102427790 102428118 -47088919 + RLTR15 LTR ERVK 1 322 -37 6 1366 217 308 25 13 chr6 102428579 102428658 -47088379 + ID4_ SINE ID 2 81 -2 6 1366 405 39 0 0 chr6 102428663 102428714 -47088323 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1366 23 78 0 0 chr6 102429405 102429456 -47087581 + AT_rich Low_complexity Low_complexity 1 51 0 6 1366 219 98 23 68 chr6 102429877 102429921 -47087116 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 6 1366 197 98 24 0 chr6 102430078 102430119 -47086918 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 6 1366 513 80 0 0 chr6 102430324 102430399 -47086638 + (T)n Simple_repeat Simple_repeat 1 75 0 6 1366 5690 35 1 0 chr6 102430976 102431658 -47085379 - L1Md_F3 LINE L1 0 6584 5902 6 1366 2129 42 0 0 chr6 102431658 102431920 -47085117 + L1Md_A LINE L1 3963 4224 -1659 6 1366 198 233 0 0 chr6 102432761 102432821 -47084216 + A-rich Low_complexity Low_complexity 1 60 0 6 1366 10000 22 0 0 chr6 102432861 102434019 -47083018 + L1Md_A LINE L1 4429 5586 -297 6 1366 8498 29 0 0 chr6 102434019 102435015 -47082022 + L1Md_A LINE L1 5587 6582 0 6 1366 382 352 0 88 chr6 102435240 102435411 -47081626 + RSINE1 SINE B4 2 157 -8 6 1366 335 316 86 13 chr6 102435627 102435778 -47081259 + MER5B DNA MER1_type 1 162 -16 6 1366 220 252 123 134 chr6 102437803 102437982 -47079055 + B2_Mm1t SINE B2 1 177 -16 6 1366 5398 152 11 2 chr6 102438836 102440049 -47076988 + Lx2B LINE L1 4951 6175 -825 6 1366 672 172 0 15 chr6 102440088 102440224 -47076813 + Lx2B LINE L1 6856 6989 -11 6 1366 680 102 0 0 chr6 102440223 102440331 -47076706 + L1_Mus2 LINE L1 6458 6565 -1 6 1366 360 341 66 29 chr6 102441025 102441297 -47075740 + L1ME3B LINE L1 5635 5916 -324 6 1366 276 30 0 0 chr6 102441495 102441528 -47075509 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1366 495 0 0 0 chr6 102441528 102441583 -47075454 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 6 1366 228 148 0 0 chr6 102441583 102441620 -47075417 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1366 180 0 0 0 chr6 102441620 102441640 -47075397 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1366 228 148 0 0 chr6 102441640 102441656 -47075381 + (TA)n Simple_repeat Simple_repeat 2 17 0 6 1366 309 51 0 0 chr6 102441803 102441842 -47075195 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1366 4509 45 12 4 chr6 102441923 102442483 -47074554 + L1Md_F2 LINE L1 6016 6580 -2 6 1366 207 0 0 0 chr6 102442610 102442633 -47074404 + (TTA)n Simple_repeat Simple_repeat 1 23 0 6 1366 2788 146 43 0 chr6 102442634 102443101 -47073936 - Lx3C LINE L1 -2 6974 6488 6 1366 3903 136 72 2 chr6 102444706 102445756 -47071281 + Lx3C LINE L1 5106 6209 -767 6 1366 3309 147 20 13 chr6 102445760 102446305 -47070732 + Lx3C LINE L1 6421 6969 -7 6 1366 429 184 23 0 chr6 102447526 102447613 -47069424 + Lx3C LINE L1 6870 6958 -18 6 1366 513 338 70 53 chr6 102447613 102447830 -47069207 + B4A SINE B4 58 278 -14 6 1366 836 114 0 7 chr6 102447844 102447985 -47069052 + (CA)n Simple_repeat Simple_repeat 1 140 0 6 1366 2119 302 61 45 chr6 102448248 102449369 -47067668 + Lx8 LINE L1 6100 7238 -235 6 1366 210 71 0 0 chr6 102449380 102449408 -47067629 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1366 1791 229 118 6 chr6 102449408 102449883 -47067154 - Lx5 LINE L1 0 7050 6523 6 1366 3483 180 100 5 chr6 102449882 102450624 -47066413 + Lx5 LINE L1 5747 6558 -492 6 1366 233 75 25 0 chr6 102450629 102450669 -47066368 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 6 1366 339 309 130 35 chr6 102450669 102450900 -47066137 + Lx8 LINE L1 7220 7472 -1 6 1366 230 241 11 0 chr6 102451056 102451143 -47065894 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 1366 324 282 68 68 chr6 102451209 102451342 -47065695 - RSINE1 SINE B4 -31 134 2 6 1366 27 29 0 0 chr6 102452903 102452937 -47064100 + AT_rich Low_complexity Low_complexity 1 34 0 6 1366 599 252 38 97 chr6 102452972 102453188 -47063849 + B3A SINE B2 8 192 -6 6 1366 8630 1 0 0 chr6 102453526 102454650 -47062387 - L1Md_A LINE L1 0 6582 5495 6 1366 8837 3 0 1 chr6 102454650 102455688 -47061349 + L1Md_A LINE L1 4460 5496 -387 6 1366 689 305 9 14 chr6 102455807 102456020 -47061017 - B3 SINE B2 -3 213 2 6 1366 247 253 96 0 chr6 102456186 102456269 -47060768 + L1M2 LINE L1 4358 4448 -1695 6 1366 1144 63 0 7 chr6 102456275 102456419 -47060618 + B1_Mus2 SINE Alu 5 147 0 6 1366 1197 233 42 45 chr6 102456475 102456924 -47060113 + Lx9 LINE L1 4646 5093 -754 6 1366 1506 25 25 15 chr6 102456985 102457186 -47059851 + L1Md_F3 LINE L1 6382 6584 0 6 1366 333 0 0 0 chr6 102457385 102457422 -47059615 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1366 405 39 0 0 chr6 102457422 102457472 -47059565 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1366 1136 69 0 20 chr6 102457567 102457715 -47059322 - B1_Mus2 SINE Alu -2 145 1 6 1366 252 313 41 11 chr6 102457717 102457900 -47059137 + Lx9 LINE L1 5327 5573 -727 6 1366 718 230 35 20 chr6 102457890 102458090 -47058947 + Lx9 LINE L1 5755 5957 -1687 6 1366 1211 247 78 3 chr6 102458118 102458402 -47058635 - MTD LTR MaLR -40 379 75 6 1366 2587 81 34 28 chr6 102458402 102458759 -47058278 + RLTR10D LTR ERVK 1 359 0 6 1366 678 322 128 36 chr6 102458759 102458812 -47058225 - MTD LTR MaLR -342 65 1 6 1366 1966 329 73 23 chr6 102459056 102460181 -47056856 + Lx9 LINE L1 6344 7524 -120 6 1366 1001 236 39 127 chr6 102460494 102460824 -47056213 - MTE2b LTR MaLR -77 302 2 6 1366 311 421 62 29 chr6 102461034 102461340 -47055697 + LTR16A LTR ERVL 41 356 -95 6 1366 1213 74 0 0 chr6 102461683 102461845 -47055192 - L1_Mus2 LINE L1 0 6566 6405 6 1366 336 161 0 0 chr6 102462433 102462495 -47054542 + GA-rich Low_complexity Low_complexity 4 65 0 6 1366 243 0 0 0 chr6 102462636 102462663 -47054374 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 6 1366 284 357 154 23 chr6 102463420 102463764 -47053273 + L2 LINE L2 2665 3053 -366 6 1366 220 357 125 0 chr6 102466725 102466837 -47050200 - B4 SINE B4 -158 134 9 6 1366 775 189 319 16 chr6 102467156 102467479 -47049558 - Lx9 LINE L1 -1 7643 7223 6 1366 669 320 95 40 chr6 102467640 102468092 -47048945 - MLT1E1A LTR MaLR 0 680 204 6 1366 1190 126 11 0 chr6 102468239 102468430 -47048607 + Lx LINE L1 6462 6654 0 6 1366 255 203 0 0 chr6 102469406 102469465 -47047572 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1366 639 300 82 104 chr6 102469478 102469757 -47047280 - B4A SINE B4 -3 289 17 6 1366 1023 37 7 0 chr6 102470311 102470446 -47046591 + L1Md_T LINE L1 6445 6580 -2 6 1366 303 28 0 0 chr6 102470833 102470869 -47046168 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 6 1366 913 332 90 3 chr6 102471115 102471459 -47045578 - MTEa LTR MaLR 0 379 6 6 1366 528 263 139 24 chr6 102471525 102471949 -47045088 + L1MB7 LINE L1 4931 5403 -743 6 1366 532 280 110 11 chr6 102472545 102472910 -47044127 + L1MB7 LINE L1 5768 6168 -16 6 1366 414 0 0 0 chr6 102473046 102473092 -47043945 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1366 300 279 183 19 chr6 102473970 102474178 -47042859 - Lx8 LINE L1 -3 7470 7229 6 1366 1051 139 181 5 chr6 102474368 102474556 -47042481 - URR1A DNA MER1_type -5 221 1 6 1366 633 278 108 16 chr6 102475260 102475454 -47041583 - B3 SINE B2 -3 213 2 6 1366 575 273 0 24 chr6 102475705 102475829 -47041208 - B3A SINE B2 -73 125 5 6 1366 491 367 72 44 chr6 102476009 102476671 -47040366 + L1M4 LINE L1 3368 4048 -2098 6 1366 276 217 83 0 chr6 102476823 102476883 -47040154 - MTC LTR MaLR -327 94 30 6 1366 292 345 58 16 chr6 102477227 102477469 -47039568 + L1M4 LINE L1 4812 5063 -1083 6 1366 543 187 105 6 chr6 102477643 102477821 -47039216 + L1M4 LINE L1 5290 5490 -674 6 1366 930 119 0 0 chr6 102479020 102479163 -47037874 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 6 1366 386 137 137 0 chr6 102479164 102479266 -47037771 + Lx9 LINE L1 7447 7562 -82 6 1366 225 94 0 0 chr6 102479381 102479413 -47037624 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1366 2538 121 28 32 chr6 102479433 102479868 -47037169 + Lx LINE L1 6144 6576 -78 6 1366 1797 140 90 0 chr6 102480441 102480741 -47036296 + ORR1A2 LTR MaLR 1 327 0 6 1366 351 96 0 0 chr6 102481652 102481704 -47035333 + (TCC)n Simple_repeat Simple_repeat 2 53 0 6 1366 243 45 43 22 chr6 102481720 102481766 -47035271 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 6 1366 275 89 0 0 chr6 102482434 102482479 -47034558 - Lx6 LINE L1 -4 7456 7412 6 1366 1455 163 9 36 chr6 102482488 102482819 -47034218 + Lx6 LINE L1 3312 3633 -2247 6 1366 6403 188 46 40 chr6 102482816 102483146 -47033891 + Lx6 LINE L1 3993 4314 -1566 6 1366 484 102 10 10 chr6 102483146 102483245 -47033792 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 6 1366 6403 188 46 40 chr6 102483245 102484581 -47032456 + Lx6 LINE L1 4315 5668 -212 6 1366 2092 242 107 44 chr6 102484591 102484957 -47032080 + Lx6 LINE L1 5929 6346 -1114 6 1366 1050 133 0 0 chr6 102484957 102485130 -47031907 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 6 1366 2092 242 107 44 chr6 102485130 102485427 -47031610 + Lx6 LINE L1 6347 6633 -827 6 1366 290 59 59 0 chr6 102485887 102485938 -47031099 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1366 217 256 0 0 chr6 102488099 102488142 -47028895 + (TATG)n Simple_repeat Simple_repeat 2 44 0 7 1366 1242 72 0 0 chr6 102488572 102488738 -47028299 + (GAAA)n Simple_repeat Simple_repeat 4 169 0 7 1366 315 0 0 0 chr6 102489034 102489069 -47027968 + (CAG)n Simple_repeat Simple_repeat 2 36 0 7 1366 1022 0 0 0 chr6 102489429 102489551 -47027486 - L1Md_A LINE L1 -1448 4435 4314 7 1366 9862 3 0 0 chr6 102489550 102490702 -47026335 + L1Md_A LINE L1 4434 5585 -298 7 1366 9093 1 0 0 chr6 102490703 102491699 -47025338 + L1Md_A LINE L1 5587 6582 0 7 1366 195 42 0 0 chr6 102492664 102492688 -47024349 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1366 572 322 20 5 chr6 102493593 102493793 -47023244 + ID_B1 SINE B4 5 207 -17 7 1366 264 59 0 0 chr6 102494080 102494114 -47022923 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1366 414 0 0 0 chr6 102494116 102494162 -47022875 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1366 3816 78 39 0 chr6 102495826 102496361 -47020676 + Lx3_Mus LINE L1 6454 7009 0 7 1366 204 240 0 0 chr6 102496362 102496412 -47020625 + A-rich Low_complexity Low_complexity 1 50 0 7 1366 456 19 0 0 chr6 102498039 102498092 -47018945 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 170 4889 135 15 21 chr6 102498147 102498949 -47018088 + Lx4A LINE L1 6255 7051 -7 7 1367 24 0 0 0 chr6 102498952 102498976 -47018061 + AT_rich Low_complexity Low_complexity 1 24 0 7 1367 2460 81 3 28 chr6 102499524 102499878 -47017159 + L1Md_F2 LINE L1 6238 6582 0 7 1367 337 325 0 0 chr6 102500169 102500252 -47016785 + B4A SINE B4 1 83 -209 1 1367 405 0 0 0 chr6 102500252 102500297 -47016740 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1367 297 0 0 0 chr6 102500297 102500329 -47016708 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1367 532 337 34 6 chr6 102500625 102500801 -47016236 + MLT1H LTR MaLR 12 192 -357 4 1367 281 366 32 11 chr6 102501230 102501324 -47015713 + B1F2 SINE Alu 3 98 -51 5 1367 1968 207 63 75 chr6 102502788 102503346 -47013691 - RLTR31_Mur LTR ERVK 0 553 3 6 1367 408 291 110 57 chr6 102503426 102504097 -47012940 + L1MA8 LINE L1 4640 5346 -797 7 1367 965 254 113 124 chr6 102504203 102505002 -47012035 + L1MA8 LINE L1 5451 6270 -21 7 1367 23 0 0 0 chr6 102505005 102505028 -47012009 + AT_rich Low_complexity Low_complexity 1 23 0 8 1367 233 309 158 20 chr6 102505075 102505227 -47011810 - MLT1H2 LTR MaLR -13 476 304 9 1367 222 37 0 0 chr6 102505993 102506020 -47011017 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1367 396 0 0 0 chr6 102506252 102506296 -47010741 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1367 624 250 25 18 chr6 102507708 102507871 -47009166 + B4A SINE B4 59 222 -70 1 1367 246 105 0 0 chr6 102507938 102507976 -47009061 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1367 1148 62 0 58 chr6 102508022 102508194 -47008843 - L1_Mus1 LINE L1 0 6567 6406 1 1367 351 0 0 0 chr6 102508539 102508578 -47008459 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1367 821 181 0 42 chr6 102508578 102508722 -47008315 - B1_Mur4 SINE Alu -12 138 1 1 1367 230 156 0 0 chr6 102511504 102511549 -47005488 + A-rich Low_complexity Low_complexity 1 45 0 1 1367 510 0 43 0 chr6 102512443 102512513 -47004524 + (CAAAAA)n Simple_repeat Simple_repeat 1 73 0 1 1367 30 0 0 0 chr6 102514164 102514194 -47002843 + GC_rich Low_complexity Low_complexity 1 30 0 1 1367 35 24 0 0 chr6 102514305 102514347 -47002690 + GC_rich Low_complexity Low_complexity 1 42 0 2 1367 223 220 0 39 chr6 102514434 102514486 -47002551 + GA-rich Low_complexity Low_complexity 2 51 0 2 1367 483 98 33 0 chr6 102515258 102515350 -47001687 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1367 252 0 0 0 chr6 102515535 102515563 -47001474 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1367 267 103 0 0 chr6 102516264 102516303 -47000734 + (ATG)n Simple_repeat Simple_repeat 1 39 0 2 1367 231 61 0 0 chr6 102516969 102517002 -47000035 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1367 23 0 0 0 chr6 102517277 102517300 -46999737 + AT_rich Low_complexity Low_complexity 1 23 0 2 1367 441 0 0 0 chr6 102518077 102518126 -46998911 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1367 193 347 112 67 chr6 102518242 102518421 -46998616 + L2b LINE L2 3179 3365 -10 2 1367 1395 281 109 23 chr6 102518678 102519322 -46997715 + Lx8 LINE L1 6774 7472 -1 2 1367 183 42 0 0 chr6 102520551 102520575 -46996462 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1367 381 22 0 0 chr6 102521738 102521784 -46995253 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1367 568 319 92 65 chr6 102521790 102522236 -46994801 + MLT1C LTR MaLR 1 458 -9 3 1367 399 223 37 37 chr6 102522710 102522817 -46994220 - B4A SINE B4 0 292 186 3 1367 479 153 10 0 chr6 102522859 102522957 -46994080 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 1367 2984 21 0 0 chr6 102522983 102523320 -46993717 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1367 53732 21 7 8 chr6 102523320 102529799 -46987238 - IAPEz-int LTR ERVK 0 6481 8 3 1367 2997 18 0 0 chr6 102529799 102530136 -46986901 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1367 276 100 0 0 chr6 102530139 102530179 -46986858 + (CCA)n Simple_repeat Simple_repeat 1 40 0 3 1367 281 393 0 0 chr6 102530182 102530266 -46986771 - B4A SINE B4 -176 116 33 3 1367 589 355 31 35 chr6 102530950 102531373 -46985664 + Lx8 LINE L1 7035 7455 -18 3 1367 231 210 118 98 chr6 102531407 102531560 -46985477 - MER45B DNA Tip100 -96 944 789 3 1367 554 30 132 7 chr6 102531694 102531782 -46985255 + (TCTCTG)n Simple_repeat Simple_repeat 1 102 0 4 1367 1052 106 6 0 chr6 102531782 102531961 -46985076 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1367 554 30 132 7 chr6 102531961 102531977 -46985060 + (TCTCTG)n Simple_repeat Simple_repeat 3 18 0 4 1367 1118 95 0 6 chr6 102531977 102532157 -46984880 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 1367 554 30 132 7 chr6 102532157 102532187 -46984850 + (TCTCTG)n Simple_repeat Simple_repeat 5 38 0 4 1367 1150 78 0 11 chr6 102532192 102532374 -46984663 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1367 286 303 128 6 chr6 102532375 102532554 -46984483 - MER45B DNA Tip100 -431 609 409 3 1367 374 338 69 44 chr6 102532661 102532865 -46984172 - MER45B DNA Tip100 -824 216 8 3 1367 249 399 123 14 chr6 102535049 102535326 -46981711 - MLT1K LTR MaLR -189 406 100 4 1367 1829 203 68 12 chr6 102535563 102535668 -46981369 + MTC LTR MaLR 1 105 -316 4 1367 1500 33 55 0 chr6 102535668 102535849 -46981188 - B2_Mm1a SINE B2 -2 191 1 4 1367 1829 203 68 12 chr6 102535849 102536142 -46980895 + MTC LTR MaLR 106 421 0 4 1367 660 71 0 0 chr6 102537943 102538042 -46978995 + (GTTTG)n Simple_repeat Simple_repeat 2 100 0 4 1367 548 251 31 169 chr6 102538306 102538531 -46978506 - B3A SINE B2 0 198 1 5 1367 50 59 0 0 chr6 102540031 102540116 -46976921 + AT_rich Low_complexity Low_complexity 1 85 0 5 1367 2355 53 0 13 chr6 102540981 102541286 -46975751 + L1Md_F2 LINE L1 6282 6582 0 5 1367 343 296 58 135 chr6 102541303 102541410 -46975627 + RSINE1 SINE B4 22 134 -31 5 1367 504 32 0 0 chr6 102541410 102541472 -46975565 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1367 343 296 58 135 chr6 102541472 102541520 -46975517 + RSINE1 SINE B4 135 165 0 5 1367 444 19 0 0 chr6 102541529 102541582 -46975455 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1367 550 164 0 26 chr6 102542437 102542550 -46974487 - Lx LINE L1 -8 6646 6537 5 1367 14117 143 86 12 chr6 102542550 102545638 -46971399 - L1VL4 LINE L1 -1637 4246 916 5 1367 2379 97 18 106 chr6 102545638 102546089 -46970948 + RLTR9F LTR ERVK 1 411 -4 5 1367 2787 186 36 46 chr6 102546089 102546366 -46970671 - L1VL4 LINE L1 -5742 915 658 5 1367 730 325 66 77 chr6 102546976 102547326 -46969711 - ORR1E LTR MaLR -7 352 7 5 1367 3289 301 108 28 chr6 102547313 102548585 -46968452 - MTE-int LTR MaLR -34 1546 172 6 1367 395 244 98 42 chr6 102548591 102549000 -46968037 + RMER17C LTR ERVK 1 353 -57 6 1367 719 305 94 67 chr6 102549159 102549500 -46967537 - ORR1E LTR MaLR -4 355 6 6 1367 223 286 27 41 chr6 102550191 102550264 -46966773 + L2a LINE L2 3317 3388 -38 6 1367 398 318 7 44 chr6 102550579 102550714 -46966323 + B1F SINE Alu 13 142 -7 6 1367 231 193 17 50 chr6 102550714 102550774 -46966263 + GA-rich Low_complexity Low_complexity 2 59 0 6 1367 205 344 45 103 chr6 102551138 102551430 -46965607 - L2c LINE L2 -2 3385 3111 6 1367 1561 257 63 23 chr6 102552076 102552682 -46964355 + L1_Mur3 LINE L1 3125 3754 -2126 6 1367 446 311 78 39 chr6 102552856 102553060 -46963977 + MLT1A0 LTR MaLR 89 300 -65 6 1367 1694 242 29 46 chr6 102553285 102553761 -46963276 + RMER19C LTR ERVK 142 609 -2 6 1367 551 257 0 0 chr6 102554276 102554389 -46962648 - PB1D9 SINE Alu -5 115 3 7 1367 584 339 26 26 chr6 102554608 102554785 -46962252 + B3A SINE B2 1 175 -23 7 1367 480 35 0 0 chr6 102554785 102554843 -46962194 + (CCA)n Simple_repeat Simple_repeat 3 60 0 7 1367 584 339 26 26 chr6 102554843 102554859 -46962178 + B3A SINE B2 176 194 -4 7 1367 24 67 0 0 chr6 102556321 102556366 -46960671 + AT_rich Low_complexity Low_complexity 1 45 0 7 1367 500 289 0 0 chr6 102557084 102557198 -46959839 + RSINE1 SINE B4 9 122 -43 7 1367 417 305 85 20 chr6 102557208 102557406 -46959631 - MLT1B LTR MaLR -67 323 113 7 1367 440 364 14 14 chr6 102557406 102557548 -46959489 + B1F SINE Alu 1 142 -7 7 1367 1021 36 22 0 chr6 102557587 102557726 -46959311 - L1Md_F3 LINE L1 -3 6581 6440 7 1367 1063 89 6 6 chr6 102558921 102559101 -46957936 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1367 246 128 0 0 chr6 102559151 102559190 -46957847 + (TATG)n Simple_repeat Simple_repeat 2 40 0 7 1367 2948 269 82 37 chr6 102559264 102559693 -46957344 + Lx7 LINE L1 4391 4852 -1028 8 1367 252 0 0 0 chr6 102559693 102559721 -46957316 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1367 2948 269 81 37 chr6 102559721 102560748 -46956289 + Lx7 LINE L1 4853 5914 -1782 8 1367 1486 163 116 3 chr6 102560913 102561214 -46955823 + RLTR15 LTR ERVK 1 335 -24 8 1367 231 36 0 0 chr6 102561221 102561249 -46955788 + (TCC)n Simple_repeat Simple_repeat 1 28 0 8 1367 608 260 23 17 chr6 102561249 102561421 -46955616 - RLTR11A2 LTR ERVK -267 260 88 8 1367 579 29 0 0 chr6 102561979 102562048 -46954989 + (TA)n Simple_repeat Simple_repeat 2 70 0 8 1367 1345 283 32 11 chr6 102562054 102562433 -46954604 + Lx9 LINE L1 6346 6732 -912 8 1367 28 0 0 0 chr6 102562515 102562543 -46954494 + AT_rich Low_complexity Low_complexity 1 28 0 8 1367 264 120 0 0 chr6 102562717 102562767 -46954270 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1367 578 366 56 19 chr6 102562797 102562850 -46954187 - B4A SINE B4 -12 280 228 8 1367 201 39 0 0 chr6 102562850 102562876 -46954161 + (TTA)n Simple_repeat Simple_repeat 3 28 0 9 1367 578 366 56 19 chr6 102562876 102563089 -46953948 - B4A SINE B4 -65 227 5 8 1367 195 42 0 0 chr6 102564038 102564062 -46952975 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1367 270 362 79 21 chr6 102565455 102565644 -46951393 - LTR85b LTR Gypsy? -28 756 557 9 1367 207 0 0 0 chr6 102565992 102566015 -46951022 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1367 234 253 31 112 chr6 102566625 102566723 -46950314 - MLT1K LTR MaLR -28 567 478 9 1367 181 196 36 0 chr6 102566732 102566788 -46950249 + CT-rich Low_complexity Low_complexity 1 58 0 9 1367 227 218 18 18 chr6 102566822 102566878 -46950159 + CT-rich Low_complexity Low_complexity 2 57 0 9 1367 6691 188 91 11 chr6 102567414 102568721 -46948316 + Lx2B LINE L1 664 2051 -3835 9 1367 1127 63 0 0 chr6 102568721 102568864 -46948173 + B1_Mus2 SINE Alu 2 144 -3 9 1367 387 0 0 0 chr6 102568864 102568907 -46948130 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 1367 6691 183 130 10 chr6 102568907 102569671 -46947366 + Lx2B LINE L1 2052 2957 -2929 9 1367 6493 203 36 12 chr6 102569663 102571317 -46945720 + Lx2B LINE L1 5313 7000 0 9 1367 484 323 74 30 chr6 102572061 102572290 -46944747 + B4 SINE B4 53 290 -2 9 1367 436 294 19 67 chr6 102574879 102575087 -46941950 - B3A SINE B2 0 198 1 1 1367 288 274 9 45 chr6 102575458 102575569 -46941468 - MLT1A1 LTR MaLR -298 110 4 1 1367 491 278 39 32 chr6 102575659 102575815 -46941222 + RSINE1 SINE B4 3 159 -6 1 1367 318 67 0 0 chr6 102575881 102575926 -46941111 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1367 2720 276 38 29 chr6 102576386 102577281 -46939756 - RCHARR1 DNA MER1_type -2 972 70 1 1367 472 53 0 26 chr6 102577319 102577397 -46939640 + (CAAAA)n Simple_repeat Simple_repeat 5 80 0 1 1367 365 362 0 0 chr6 102577870 102577975 -46939062 + L2b LINE L2 3267 3371 -4 1 1367 2512 63 3 0 chr6 102578350 102578666 -46938371 - L1_Mus1 LINE L1 -279 6288 5972 1 1367 2065 62 0 52 chr6 102578666 102578954 -46938083 + L1_Mus1 LINE L1 6294 6566 -1 1 1367 189 0 0 0 chr6 102578980 102579001 -46938036 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1367 461 62 15 0 chr6 102579089 102579154 -46937883 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1367 366 372 15 52 chr6 102579224 102579360 -46937677 + ID_B1 SINE B4 89 219 -5 1 1367 484 363 50 48 chr6 102579604 102580041 -46936996 - Lx8 LINE L1 -2 7471 7034 1 1367 211 300 71 78 chr6 102580603 102580744 -46936293 - MIR3 SINE MIR -9 199 60 1 1367 426 85 0 0 chr6 102581700 102581759 -46935278 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1367 590 344 79 27 chr6 102582428 102583059 -46933978 + L1MD3 LINE L1 7314 7977 -18 1 1367 243 290 65 97 chr6 102583682 102583942 -46933095 + LTR48 LTR ERV1 385 785 -2 1 1367 522 0 0 0 chr6 102584060 102584118 -46932919 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1367 439 305 11 130 chr6 102585242 102585399 -46931638 + RSINE1 SINE B4 4 142 -23 1 1367 438 20 0 0 chr6 102585399 102585450 -46931587 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1367 439 305 11 130 chr6 102585450 102585469 -46931568 + RSINE1 SINE B4 143 159 -6 1 1367 237 292 49 59 chr6 102585726 102585828 -46931209 - B3 SINE B2 0 216 116 1 1367 356 87 0 0 chr6 102585836 102585882 -46931155 - ORR1A3 LTR MaLR -8 318 273 1 1367 1318 138 4 0 chr6 102585886 102586111 -46930926 - Lx2 LINE L1 0 6997 6772 1 1367 390 314 0 87 chr6 102586112 102586138 -46930899 - B3 SINE B2 -106 110 94 1 1367 2660 102 27 2 chr6 102586138 102586549 -46930488 - BGLII LTR ERVK 0 421 1 1 1367 390 314 0 87 chr6 102586549 102586637 -46930400 - B3 SINE B2 -123 93 6 1 1367 555 285 75 12 chr6 102587836 102587996 -46929041 - B3 SINE B2 0 216 47 1 1367 201 74 0 0 chr6 102588025 102588052 -46928985 + (TTTAA)n Simple_repeat Simple_repeat 3 29 0 1 1367 3588 146 63 33 chr6 102588052 102588716 -46928321 - Lx4A LINE L1 -4 7054 6371 1 1367 4003 139 3 5 chr6 102588718 102589348 -46927689 + Lx4A LINE L1 5751 6379 -679 1 1367 285 366 0 0 chr6 102589556 102589649 -46927388 - ID_B1 SINE B4 -6 218 126 1 1367 595 284 10 78 chr6 102589928 102590134 -46926903 + B3A SINE B2 7 198 0 1 1367 543 107 0 0 chr6 102590399 102590483 -46926554 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1367 855 292 61 36 chr6 102590507 102590787 -46926250 - B4A SINE B4 -4 288 2 1 1367 25 51 0 0 chr6 102591906 102591945 -46925092 + AT_rich Low_complexity Low_complexity 1 39 0 1 1367 2768 100 19 21 chr6 102592311 102592730 -46924307 - L1_Mus4 LINE L1 -1 6635 6218 1 1367 1077 157 19 44 chr6 102592731 102592937 -46924100 + L1_Mur2 LINE L1 3742 3942 -1935 1 1367 2878 9 0 0 chr6 102593132 102593460 -46923577 - L1Md_A LINE L1 0 6582 6255 1 1367 493 340 24 108 chr6 102593958 102594138 -46922899 - B4 SINE B4 -10 282 126 1 1367 2041 190 82 3 chr6 102594138 102594528 -46922509 + MTC LTR MaLR 1 421 0 1 1367 493 340 24 108 chr6 102594528 102594644 -46922393 - B4 SINE B4 -167 125 11 1 1367 504 0 0 0 chr6 102595681 102595737 -46921300 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1367 21 71 0 0 chr6 102596107 102596149 -46920888 + AT_rich Low_complexity Low_complexity 1 42 0 1 1367 2367 224 34 95 chr6 102596341 102597077 -46919960 - Lx7 LINE L1 0 7696 7006 1 1367 468 0 0 0 chr6 102597082 102597134 -46919903 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 1 1367 692 198 89 25 chr6 102597142 102597344 -46919693 - Lx9 LINE L1 -179 7465 7251 1 1367 912 322 67 67 chr6 102598667 102598943 -46918094 - MT2A LTR ERVL 0 533 255 1 1367 231 61 0 0 chr6 102598943 102598976 -46918061 + (CAG)n Simple_repeat Simple_repeat 2 34 0 1 1367 912 322 67 67 chr6 102598976 102599162 -46917875 - MT2A LTR ERVL -279 254 71 1 1367 420 314 16 31 chr6 102599137 102599265 -46917772 - MTE2b LTR MaLR -251 128 3 1 1367 311 291 28 46 chr6 102599395 102599503 -46917534 - PB1D10 SINE Alu -2 115 10 1 1367 832 335 58 14 chr6 102600098 102600374 -46916663 + B4A SINE B4 1 288 -4 1 1367 191 358 99 79 chr6 102601756 102602099 -46914938 + L2a LINE L2 3052 3401 -25 1 1367 510 46 0 0 chr6 102602240 102602305 -46914732 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1367 438 20 0 0 chr6 102602879 102602930 -46914107 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1367 201 74 0 0 chr6 102603166 102603193 -46913844 + (TAAAA)n Simple_repeat Simple_repeat 5 31 0 1 1367 242 308 43 32 chr6 102603250 102603344 -46913693 + RMER1B Other Other 4 98 -968 1 1367 1552 312 95 56 chr6 102603510 102603778 -46913259 + RMER1B Other Other 163 276 -790 1 1367 5266 141 44 65 chr6 102603778 102604752 -46912285 + RMER17B LTR ERVK 1 954 -4 1 1367 1552 277 172 25 chr6 102604752 102605292 -46911745 + RMER1B Other Other 277 910 -156 1 1367 442 216 54 31 chr6 102605412 102605541 -46911496 + RMER1B Other Other 935 1066 0 1 1367 279 225 28 0 chr6 102607213 102607284 -46909753 + L1M3 LINE L1 5711 5783 -400 1 1367 4280 100 53 56 chr6 102607809 102608229 -46908808 - RMER17A LTR ERVK 0 751 368 1 1367 1235 89 0 6 chr6 102608229 102608409 -46908628 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 1 1367 4280 100 53 56 chr6 102608409 102608741 -46908296 - RMER17A LTR ERVK -384 367 1 1 1367 3017 34 47 5 chr6 102609151 102609531 -46907506 + MTA_Mm LTR MaLR 1 396 0 1 1367 723 255 204 39 chr6 102610168 102610501 -46906536 - Lx9 LINE L1 0 7644 7257 1 1367 237 65 0 0 chr6 102610528 102610559 -46906478 - RMER16 LTR ERVK -83 450 420 1 1367 520 217 56 57 chr6 102610563 102610809 -46906228 - Lx9 LINE L1 -406 7238 6949 1 1367 259 136 0 0 chr6 102611797 102611841 -46905196 + L1VL1 LINE L1 2 45 -6377 1 1367 8740 80 14 9 chr6 102611850 102613735 -46903302 + L1Md_F2 LINE L1 620 2486 -3397 1 1367 3655 76 4 0 chr6 102613732 102614244 -46902793 + L1Md_F2 LINE L1 5072 5585 -298 1 1367 7104 93 6 5 chr6 102614245 102615239 -46901798 + L1Md_F2 LINE L1 5587 6581 -1 1 1367 799 98 104 15 chr6 102615317 102615452 -46901585 - L1Md_F2 LINE L1 0 6582 6436 1 1367 3304 49 0 5 chr6 102615452 102615880 -46901157 - L1Md_F2 LINE L1 -269 6313 5888 1 1367 23 33 0 0 chr6 102616559 102616589 -46900448 + AT_rich Low_complexity Low_complexity 1 30 0 1 1367 33756 35 0 0 chr6 102616934 102622479 -46894558 + L1Md_T LINE L1 1 5589 -297 1 1367 9018 6 0 0 chr6 102622479 102623526 -46893511 + L1Md_T LINE L1 5590 6585 0 1 1367 706 277 27 5 chr6 102623719 102623904 -46893133 - MTEa LTR MaLR 0 379 191 1 1367 396 0 0 0 chr6 102623904 102623948 -46893089 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1367 2607 170 47 14 chr6 102623990 102624478 -46892559 + RLTR16 LTR ERVK 1 504 -1 1 1367 405 298 35 9 chr6 102624479 102624594 -46892443 - MTEa LTR MaLR -261 118 1 1 1367 1262 283 62 41 chr6 102624848 102625238 -46891799 + MTD LTR MaLR 6 403 -16 1 1367 242 319 0 76 chr6 102625250 102625355 -46891682 + Lx8 LINE L1 7169 7265 -208 1 1367 543 43 0 0 chr6 102625365 102625435 -46891602 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1367 234 0 0 0 chr6 102625444 102625470 -46891567 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1367 2358 185 39 74 chr6 102625470 102626066 -46890971 + RMER6C LTR ERVK 116 690 0 1 1367 21 0 0 0 chr6 102626194 102626215 -46890822 + AT_rich Low_complexity Low_complexity 1 21 0 1 1367 459 324 0 131 chr6 102626229 102626389 -46890648 + RSINE1 SINE B4 11 149 -16 1 1367 264 298 109 16 chr6 102626504 102626688 -46890349 + Charlie4a DNA MER1_type 244 444 -64 1 1367 595 130 9 18 chr6 102627913 102628023 -46889014 - URR1B DNA MER1_type 0 225 117 1 1367 444 239 0 8 chr6 102628141 102628259 -46888778 - L1_Rod LINE L1 -95 5752 5636 1 1367 672 308 76 88 chr6 102628305 102628905 -46888132 - RLTR26 LTR ERVK -24 618 3 1 170 2530 37 0 0 chr6 102629195 102629494 -46887543 - L1Md_T LINE L1 -1 6581 6283 1 1368 324 0 0 0 chr6 102629784 102629820 -46887217 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1368 558 345 34 67 chr6 102630708 102631006 -46886031 - B4A SINE B4 0 292 5 1 1368 382 309 122 12 chr6 102631050 102631214 -46885823 + MER20 DNA MER1_type 24 205 -14 1 1368 1509 73 0 0 chr6 102631658 102631864 -46885173 - L1_Mus2 LINE L1 0 6566 6361 1 1368 723 308 55 10 chr6 102632137 102632449 -46884588 - Lx7 LINE L1 -1230 6466 6141 1 1368 753 143 14 7 chr6 102632525 102632666 -46884371 - Lx LINE L1 0 6654 6513 1 1368 2272 127 5 3 chr6 102632666 102633053 -46883984 + L1_Mm LINE L1 3788 4175 -1708 1 1368 2369 206 62 4 chr6 102633192 102633680 -46883357 - RMER20A LTR ERVK 0 516 1 1 1368 903 278 4 8 chr6 102633680 102633948 -46883089 + L1_Mur3 LINE L1 5525 5791 -89 1 1368 680 276 30 48 chr6 102633969 102634239 -46882798 - Lx8 LINE L1 -477 6996 6732 1 1368 33670 49 0 3 chr6 102634235 102639845 -46877192 + L1Md_T LINE L1 1 5589 -297 1 1368 8492 32 0 0 chr6 102639845 102640841 -46876196 + L1Md_T LINE L1 5590 6585 0 1 1368 1304 319 35 4 chr6 102640870 102641412 -46875625 - Lx8 LINE L1 -712 6761 6203 1 1368 536 328 38 24 chr6 102641567 102641907 -46875130 - L1M2 LINE L1 -1153 4990 4646 1 1368 207 45 43 43 chr6 102643250 102643296 -46873741 + (TTTTTG)n Simple_repeat Simple_repeat 4 49 0 1 1368 30 59 0 0 chr6 102643962 102644013 -46873024 + AT_rich Low_complexity Low_complexity 1 51 0 1 1368 198 0 0 0 chr6 102644136 102644158 -46872879 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1368 519 95 0 0 chr6 102644186 102644260 -46872777 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1368 258 32 0 0 chr6 102644260 102644290 -46872747 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1368 390 331 39 8 chr6 102644295 102644423 -46872614 - B3 SINE B2 -33 183 52 1 1368 5127 43 2 3 chr6 102644605 102645232 -46871805 + L1Md_F2 LINE L1 5955 6580 -2 1 1368 451 295 0 0 chr6 102645274 102645369 -46871668 - B3 SINE B2 -121 95 1 1 1368 240 35 0 0 chr6 102645944 102645973 -46871064 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1368 429 251 26 100 chr6 102645974 102645994 -46871043 - B2_Mm2 SINE B2 -18 177 162 1 1368 213 39 0 0 chr6 102645994 102646020 -46871017 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1368 685 251 26 100 chr6 102646020 102646189 -46870848 - B3A SINE B2 -28 170 2 1 1368 501 17 0 0 chr6 102646276 102646334 -46870703 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 1368 739 300 60 39 chr6 102646371 102646574 -46870463 - B4 SINE B4 0 292 91 2 1368 180 0 0 0 chr6 102646574 102646594 -46870443 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1368 739 300 60 39 chr6 102646594 102646671 -46870366 - B4 SINE B4 -202 90 6 2 1368 913 199 44 24 chr6 102646819 102647025 -46870012 + B3 SINE B2 3 212 -4 2 1368 286 152 0 0 chr6 102647069 102647115 -46869922 + U2 snRNA snRNA 1 46 -142 2 1368 264 304 54 112 chr6 102647144 102647385 -46869652 - ORR1D2 LTR MaLR -124 246 20 2 1368 228 170 0 21 chr6 102648632 102648680 -46868357 + A-rich Low_complexity Low_complexity 1 47 0 2 1368 458 280 17 8 chr6 102648907 102649026 -46868011 - B1_Mur1 SINE Alu -1 148 29 2 1368 847 375 63 7 chr6 102649882 102650296 -46866741 + Tigger7 DNA MER2_type 13 449 -2042 2 1368 392 342 19 32 chr6 102650303 102650457 -46866580 + Tigger7 DNA MER2_type 2337 2488 -3 2 1368 1260 210 70 47 chr6 102652179 102652520 -46864517 + RLTR20A LTR ERVK 3 305 -263 2 1368 441 0 0 0 chr6 102652828 102652877 -46864160 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1368 1445 70 0 0 chr6 102653232 102653419 -46863618 - L1_Mus1 LINE L1 0 6567 6381 2 1368 274 332 109 17 chr6 102653419 102653649 -46863388 - L1ME2 LINE L1 -205 5959 5709 2 1368 715 205 108 28 chr6 102654337 102654513 -46862524 + Tigger1 DNA MER2_type 2229 2418 0 2 1368 831 183 103 27 chr6 102654631 102654816 -46862221 - MTC LTR MaLR 0 421 223 2 1368 3280 51 5 5 chr6 102654831 102655245 -46861792 - L1Md_F2 LINE L1 0 6582 6169 2 1368 3554 39 2 28 chr6 102655252 102655314 -46861723 + L1Md_F2 LINE L1 5719 5772 -810 2 1368 1468 58 5 11 chr6 102655314 102655504 -46861533 - B2_Mm1t SINE B2 -4 189 1 2 1368 3554 39 2 28 chr6 102655504 102655914 -46861123 + L1Md_F2 LINE L1 5773 6179 -403 2 1368 232 301 81 14 chr6 102655933 102656007 -46861030 + MIRb SINE MIR 35 113 -155 2 1368 193 317 36 12 chr6 102656538 102656621 -46860416 - MIRb SINE MIR -24 244 160 2 1368 446 331 73 33 chr6 102656828 102656978 -46860059 - RSINE1 SINE B4 0 165 10 2 1368 390 329 74 4 chr6 102657625 102657869 -46859168 - L1ME2z LINE L1 -336 6108 5848 2 1368 3262 235 25 10 chr6 102658171 102659082 -46857955 - Lx9 LINE L1 -1 7643 6719 2 1368 370 331 92 0 chr6 102659326 102659468 -46857569 - RSINE1 SINE B4 -8 157 3 2 1368 216 150 0 0 chr6 102659475 102659503 -46857534 + (TTCTCC)n Simple_repeat Simple_repeat 4 31 0 2 1368 1092 133 0 0 chr6 102659503 102659683 -46857354 + (TCC)n Simple_repeat Simple_repeat 1 180 0 2 1368 216 150 0 0 chr6 102659683 102659694 -46857343 + (TTCTCC)n Simple_repeat Simple_repeat 5 15 0 2 1368 7317 77 12 0 chr6 102659731 102660927 -46856110 - L1_Mus3 LINE L1 -4 6634 5420 2 1368 1546 230 96 5 chr6 102660971 102661355 -46855682 + MTD LTR MaLR 1 419 0 2 1368 270 242 44 0 chr6 102661835 102661926 -46855111 - L1MCb LINE L1 -3805 2833 2739 2 1368 268 271 101 24 chr6 102663110 102663318 -46853719 - L1MCb LINE L1 -5135 1605 1274 2 1368 3009 69 2 49 chr6 102663682 102664108 -46852929 - L1_Mus2 LINE L1 0 6566 6161 2 1368 450 0 0 0 chr6 102664239 102664289 -46852748 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1368 2113 154 17 6 chr6 102665083 102665436 -46851601 + Lx3C LINE L1 6618 6974 -2 2 1368 182 147 43 14 chr6 102665595 102665664 -46851373 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 2 1368 6338 252 48 16 chr6 102665736 102666010 -46851027 - Lx6 LINE L1 -60 7400 7124 2 1368 222 62 0 0 chr6 102666010 102666042 -46850995 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 2 1368 9666 214 44 21 chr6 102666042 102669451 -46847586 - Lx6 LINE L1 -337 7123 3639 2 1368 3160 277 56 16 chr6 102669456 102670354 -46846683 - Lx5 LINE L1 -7 7043 6110 2 1368 275 202 0 92 chr6 102670358 102670456 -46846581 - Lx6 LINE L1 -2225 3652 3564 2 1368 206 197 0 32 chr6 102670456 102670519 -46846518 + T-rich Low_complexity Low_complexity 4 64 0 2 1368 261 139 0 0 chr6 102670522 102670565 -46846472 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1368 1646 192 42 42 chr6 102670583 102671057 -46845980 - Lx6 LINE L1 -2358 3522 3049 2 1368 5059 127 15 28 chr6 102671069 102671376 -46845661 + RLTR22_Mur LTR ERVK 1 295 -1553 2 1368 5314 124 39 35 chr6 102671376 102672268 -46844769 - Lx3A LINE L1 -3 6978 6083 2 1368 5059 127 15 28 chr6 102672268 102672826 -46844211 + RLTR22_Mur LTR ERVK 296 855 -993 2 1368 448 214 21 71 chr6 102672902 102672923 -46844114 - Lx6 LINE L1 -3199 2681 2662 2 1368 306 0 0 0 chr6 102672923 102672957 -46844080 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1368 448 214 21 71 chr6 102672957 102673076 -46843961 - Lx6 LINE L1 -3219 2661 2548 2 1368 2196 63 20 3 chr6 102673217 102673518 -46843519 - L1_Mus2 LINE L1 -1 6565 6260 2 1368 294 245 110 48 chr6 102673570 102673716 -46843321 - L1MCb LINE L1 -5001 1124 970 2 1368 344 348 40 54 chr6 102673775 102673997 -46843040 - L1MCb LINE L1 -5255 870 652 2 1368 1481 254 111 37 chr6 102674243 102674701 -46842336 + RMER1B Other Other 572 1063 -3 2 1368 517 216 14 0 chr6 102674743 102674882 -46842155 + GA-rich Low_complexity Low_complexity 2 142 0 2 1368 556 314 5 35 chr6 102675752 102675953 -46841084 - B3A SINE B2 -2 196 2 2 1368 3164 134 27 4 chr6 102676382 102676897 -46840140 - Lx LINE L1 -7 6647 6121 2 1368 219 133 0 0 chr6 102676897 102676942 -46840095 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1368 1113 307 21 87 chr6 102676996 102677431 -46839606 + MTD LTR MaLR 1 406 -13 2 1368 2945 145 16 2 chr6 102677516 102678006 -46839031 - L1_Mus3 LINE L1 -642 5241 4745 2 1368 7456 96 20 0 chr6 102678003 102679350 -46837687 + L1_Mus3 LINE L1 5258 6632 -6 2 1368 394 293 51 36 chr6 102679695 102679833 -46837204 + ID_B1 SINE B4 85 224 0 2 1368 230 351 13 0 chr6 102679843 102679920 -46837117 + ID4 SINE ID 3 80 -3 2 1368 384 88 0 0 chr6 102680885 102680942 -46836095 + (GA)n Simple_repeat Simple_repeat 1 57 0 2 1368 391 172 21 21 chr6 102681137 102681157 -46835880 - L1_Mm LINE L1 -531 5352 5334 2 1368 387 0 0 0 chr6 102681157 102681200 -46835837 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1368 391 172 21 21 chr6 102681200 102681274 -46835763 - L1_Mm LINE L1 -550 5333 5258 2 1368 258 152 0 0 chr6 102681271 102681317 -46835720 + L1_Mm LINE L1 4745 4790 -1093 2 1368 195 114 0 0 chr6 102681317 102681352 -46835685 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1368 310 155 175 0 chr6 102681562 102681665 -46835372 - Lx9 LINE L1 -1 7643 7523 2 1368 1177 278 74 12 chr6 102681692 102682097 -46834940 - Lx6 LINE L1 -1 7459 7030 2 1368 1604 138 76 83 chr6 102682097 102682493 -46834544 + RLTR9C LTR ERVK 1 393 0 2 1368 876 239 122 23 chr6 102682494 102682845 -46834192 + ETnERV2-int LTR ERVK 2 387 -2927 2 1368 4726 150 62 37 chr6 102682855 102683847 -46833190 + ETnERV2-int LTR ERVK 1071 2086 -5320 2 1368 4843 143 52 39 chr6 102683874 102684861 -46832176 + ETnERV2-int LTR ERVK 1995 3480 -2328 2 1368 3046 96 22 5 chr6 102685110 102685558 -46831479 + ETnERV2-int LTR ERVK 3446 3901 -3505 2 1368 465 19 0 0 chr6 102685558 102685612 -46831425 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1368 6263 130 51 10 chr6 102685616 102686574 -46830463 + ETnERV2-int LTR ERVK 3985 4981 -2425 2 1368 2541 188 24 82 chr6 102686570 102687353 -46829684 + MMETn-int LTR ERVK 2473 3141 -1703 2 1368 1312 158 28 22 chr6 102687335 102687598 -46829439 + MMETn-int LTR ERVK 6222 6429 -977 2 1368 471 100 29 0 chr6 102687809 102687879 -46829158 + MMETn-int LTR ERVK 7331 7402 -4 2 1368 2002 145 14 83 chr6 102687882 102688304 -46828733 + RLTR9C LTR ERVK 1 393 0 2 1368 959 194 116 10 chr6 102688462 102688660 -46828377 - RLTR42 LTR ERVK -20 219 1 2 1368 489 123 12 47 chr6 102688687 102688772 -46828265 - MTC LTR MaLR 0 421 340 2 1368 9317 116 7 18 chr6 102688787 102690631 -46826406 - Lx3_Mus LINE L1 -8 7001 5183 2 1368 4921 85 9 3 chr6 102690634 102690940 -46826097 + L1_Mur1 LINE L1 4429 4736 -1150 2 1368 316 0 22 22 chr6 102690940 102690985 -46826052 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 2 1368 4921 85 9 3 chr6 102690985 102691376 -46825661 + L1_Mur1 LINE L1 4737 5129 -757 2 1368 339 298 46 17 chr6 102691558 102691732 -46825305 - L1M5 LINE L1 -1454 4692 4514 2 1368 536 322 56 61 chr6 102692319 102692454 -46824583 + B3A SINE B2 2 138 -60 2 1368 359 41 0 20 chr6 102692454 102692504 -46824533 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1368 450 0 0 0 chr6 102692504 102692553 -46824484 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1368 536 322 56 61 chr6 102692553 102692614 -46824423 + B3A SINE B2 139 197 -1 2 1368 1986 224 33 15 chr6 102692646 102693104 -46823933 + RLTR11A2 LTR ERVK 62 527 0 2 1368 309 304 70 33 chr6 102693690 102694070 -46822967 - L1M5 LINE L1 -390 5789 5400 2 1368 395 292 44 30 chr6 102694693 102694896 -46822141 - L1M2 LINE L1 -1262 4884 4682 2 1368 387 324 56 56 chr6 102694962 102695281 -46821756 - L1M5 LINE L1 -1520 4626 4306 2 1368 1786 109 102 64 chr6 102695281 102695595 -46821442 - ORR1A3 LTR MaLR 0 326 1 2 1368 387 324 56 56 chr6 102695595 102695671 -46821366 - L1M5 LINE L1 -1841 4305 4232 2 1368 2222 139 26 122 chr6 102696392 102696925 -46820112 - RLTR45 LTR ERVK 0 482 1 2 1368 2303 248 45 13 chr6 102698108 102698215 -46818822 + Lx5 LINE L1 6479 6596 -454 2 1368 1401 210 126 72 chr6 102698215 102698589 -46818448 - ORR1B1 LTR MaLR 0 394 1 2 1368 2303 248 45 13 chr6 102698589 102699032 -46818005 + Lx5 LINE L1 6597 7046 -4 2 1368 730 294 84 104 chr6 102699107 102699596 -46817441 + RMER5 LTR ERV1 56 534 0 2 1368 490 161 0 24 chr6 102699992 102700075 -46816962 + B2_Mm2 SINE B2 1 81 -114 2 1368 189 0 0 0 chr6 102700079 102700100 -46816937 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2 1368 3036 94 31 37 chr6 102700156 102700641 -46816396 + RLTR45 LTR ERVK 1 482 0 2 1368 252 149 0 0 chr6 102700860 102700907 -46816130 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1368 405 259 11 0 chr6 102700945 102701048 -46815989 + B1F SINE Alu 1 104 -16 2 1368 321 272 65 46 chr6 102701587 102701695 -46815342 + MLT2F LTR ERVL 241 350 -313 2 1368 183 80 0 0 chr6 102702260 102702285 -46814752 + (TAA)n Simple_repeat Simple_repeat 2 26 0 2 1368 190 282 248 8 chr6 102702493 102702618 -46814419 + MIRb SINE MIR 79 233 -35 2 1368 225 407 23 0 chr6 102703139 102703316 -46813721 - Lx8 LINE L1 -179 7294 7114 2 1368 477 221 26 17 chr6 102703588 102703703 -46813334 - PB1D7 SINE Alu -1 119 4 2 1368 34 24 0 0 chr6 102704027 102704068 -46812969 + AT_rich Low_complexity Low_complexity 1 41 0 2 1368 322 239 113 0 chr6 102704071 102704142 -46812895 + RSINE1 SINE B4 18 96 -69 2 1368 216 158 0 0 chr6 102704191 102704229 -46812808 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2 1368 2214 92 56 6 chr6 102704376 102704735 -46812302 - RLTR9D LTR ERVK -26 377 1 2 1368 512 218 27 0 chr6 102704735 102704845 -46812192 + RMER1C Other Other 1230 1342 0 2 1368 325 324 37 37 chr6 102705021 102705130 -46811907 - RSINE1 SINE B4 -14 151 43 2 1368 322 208 251 11 chr6 102705223 102705366 -46811671 + MTEa LTR MaLR 212 377 -2 2 1368 342 159 97 19 chr6 102706521 102706675 -46810362 + (TCTA)n Simple_repeat Simple_repeat 3 168 0 2 1368 425 227 9 0 chr6 102706738 102706848 -46810189 + (TA)n Simple_repeat Simple_repeat 2 112 0 2 1368 3732 147 20 26 chr6 102709235 102709884 -46807153 - Lx2 LINE L1 0 6997 6353 2 1368 183 173 37 37 chr6 102710018 102710072 -46806965 + L2 LINE L2 1733 1786 -1633 2 1368 531 0 0 0 chr6 102711266 102711325 -46805712 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1368 1096 79 11 17 chr6 102711678 102711859 -46805178 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 1368 362 111 16 0 chr6 102711902 102711965 -46805072 - Lx2 LINE L1 -5 6992 6929 3 1368 1827 303 36 26 chr6 102712165 102712747 -46804290 + Lx7 LINE L1 6555 7142 -554 3 1368 396 55 0 0 chr6 102712885 102712940 -46804097 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 3 1368 661 113 19 19 chr6 102713021 102713129 -46803908 + PB1D9 SINE Alu 13 120 0 3 1368 21 36 0 0 chr6 102713129 102713157 -46803880 + AT_rich Low_complexity Low_complexity 1 28 0 3 1368 1019 96 0 7 chr6 102713476 102713623 -46803414 - B1_Mus1 SINE Alu -1 147 2 3 1368 333 0 0 0 chr6 102713704 102713741 -46803296 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1368 475 353 17 35 chr6 102713742 102713915 -46803122 - B3A SINE B2 -24 174 5 3 1368 201 132 0 0 chr6 102713988 102714026 -46803011 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1368 6694 152 8 45 chr6 102714091 102714639 -46802398 - Lx7 LINE L1 -1884 5812 5293 3 1368 2107 44 0 22 chr6 102714639 102714917 -46802120 - L1Md_F2 LINE L1 -1 6581 6310 3 1368 6694 146 9 46 chr6 102714917 102715632 -46801405 - Lx7 LINE L1 -591 5292 4601 3 1368 5880 102 7 9 chr6 102715645 102716488 -46800549 + L1_Mus4 LINE L1 5788 6628 -8 3 1368 527 303 132 22 chr6 102716893 102717437 -46799600 - L1MEf LINE L1 -5131 1069 466 3 1368 37868 45 1 3 chr6 102717448 102723940 -46793097 - L1Md_T LINE L1 0 6585 56 3 1368 207 232 0 0 chr6 102724554 102724610 -46792427 + (CAG)n Simple_repeat Simple_repeat 1 56 0 3 1368 570 288 45 71 chr6 102725348 102725546 -46791491 + B3A SINE B2 6 198 0 3 1368 414 39 0 0 chr6 102725617 102725669 -46791368 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1368 767 170 0 90 chr6 102726104 102726259 -46790778 + B1_Mus1 SINE Alu 1 141 -7 3 1368 798 283 79 48 chr6 102726363 102726771 -46790266 + RMER20B LTR ERVK 93 516 0 3 1368 522 0 0 0 chr6 102726848 102726906 -46790131 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 3 1368 342 285 146 54 chr6 102726995 102727505 -46789532 + L1ME2 LINE L1 4966 5530 -634 3 1368 21 57 0 0 chr6 102727632 102727667 -46789370 + AT_rich Low_complexity Low_complexity 1 35 0 3 1368 315 309 89 37 chr6 102727691 102728017 -46789020 + L1ME2 LINE L1 5573 5915 -249 3 1368 1065 256 114 107 chr6 102728105 102728595 -46788442 + RLTR20A2 LTR ERVK 5 482 -96 3 1368 765 128 0 0 chr6 102728595 102728743 -46788294 + (TG)n Simple_repeat Simple_repeat 2 149 0 3 1368 1065 256 114 107 chr6 102728743 102728806 -46788231 + RLTR20A2 LTR ERVK 483 561 -17 3 1368 4061 107 58 5 chr6 102728816 102729453 -46787584 - L1_Mus4 LINE L1 -115 6521 5851 3 1368 1268 206 106 16 chr6 102729453 102729774 -46787263 + MYSERV16_I-int LTR ERVK 439 788 -1538 3 1368 640 177 44 75 chr6 102729776 102729935 -46787102 + RLTR20A1 LTR ERVK 398 551 0 3 1368 519 45 0 0 chr6 102730116 102730182 -46786855 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1368 314 315 36 36 chr6 102730193 102730305 -46786732 - ORR1E LTR MaLR -247 112 1 3 1368 501 296 0 0 chr6 102730305 102730407 -46786630 - ORR1E-int LTR MaLR -53 1527 1426 3 1368 23 0 0 0 chr6 102730518 102730541 -46786496 + AT_rich Low_complexity Low_complexity 1 23 0 3 1368 35213 29 0 7 chr6 102731986 102736998 -46780039 + L1Md_T LINE L1 619 5586 -297 3 1368 9029 5 0 0 chr6 102736998 102737994 -46779043 + L1Md_T LINE L1 5587 6582 0 3 1368 20203 29 2 0 chr6 102737999 102740529 -46776508 + L1Md_T LINE L1 3052 5585 -298 3 1368 8150 41 1 2 chr6 102740530 102741522 -46775515 + L1Md_T LINE L1 5587 6577 -5 3 1368 228 35 0 0 chr6 102741522 102741551 -46775486 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1368 227 356 24 41 chr6 102742104 102742274 -46774763 + LTR90A LTR LTR 208 374 -602 3 1368 21 0 0 0 chr6 102742655 102742676 -46774361 + AT_rich Low_complexity Low_complexity 1 21 0 3 1368 183 42 0 0 chr6 102742797 102742821 -46774216 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1368 425 321 120 47 chr6 102742898 102743156 -46773881 + ORR1E LTR MaLR 68 344 -15 3 1368 186 43 0 0 chr6 102743311 102743334 -46773703 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1368 396 0 0 0 chr6 102743872 102743916 -46773121 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1368 306 319 0 92 chr6 102744630 102744761 -46772276 + MLT1K LTR MaLR 474 592 -3 3 1368 293 341 93 6 chr6 102746606 102746789 -46770248 + MER3 DNA MER1_type 1 199 -10 3 1368 328 379 54 16 chr6 102747145 102747330 -46769707 + L2b LINE L2 3178 3369 -6 3 1368 943 251 101 20 chr6 102747422 102747837 -46769200 - Lx7 LINE L1 -1475 5998 5518 3 1368 21 0 0 0 chr6 102748095 102748116 -46768921 + AT_rich Low_complexity Low_complexity 1 21 0 3 1368 3398 151 12 10 chr6 102748451 102749026 -46768011 + Lx LINE L1 6079 6654 0 3 1368 452 116 12 0 chr6 102749264 102749350 -46767687 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1368 240 226 0 0 chr6 102750294 102750356 -46766681 + (TGG)n Simple_repeat Simple_repeat 1 62 0 3 1368 1176 127 39 0 chr6 102750505 102750686 -46766351 + B2_Mm2 SINE B2 3 190 -5 3 1368 186 351 52 37 chr6 102750843 102750979 -46766058 + MIR SINE MIR 34 171 -91 3 1368 589 306 97 58 chr6 102751613 102751942 -46765095 + MLT1A0 LTR MaLR 13 354 -11 3 1368 224 100 25 0 chr6 102752323 102752363 -46764674 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 3 1368 1055 97 0 0 chr6 102752363 102752507 -46764530 - B1_Mus1 SINE Alu 0 148 5 3 1368 294 307 28 58 chr6 102752519 102752627 -46764410 - PB1D10 SINE Alu -6 111 10 3 1368 370 181 19 0 chr6 102752634 102752739 -46764298 + (TG)n Simple_repeat Simple_repeat 2 108 0 3 1368 281 231 13 0 chr6 102752759 102752837 -46764200 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1368 881 114 8 0 chr6 102753062 102753194 -46763843 - B1_Mm SINE Alu -1 146 14 3 1368 4884 72 6 2 chr6 102753194 102753837 -46763200 + L1_Mus1 LINE L1 5919 6564 -3 3 1368 375 333 78 23 chr6 102754493 102754751 -46762286 + B4 SINE B4 3 274 -18 3 1368 402 39 0 0 chr6 102754978 102755030 -46762007 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1368 426 69 0 0 chr6 102755025 102755083 -46761954 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1368 442 317 77 6 chr6 102755091 102755259 -46761778 - B3A SINE B2 -15 183 4 3 1368 490 367 81 12 chr6 102755841 102756164 -46760873 - MER2 DNA MER2_type 0 345 1 3 1368 802 280 14 0 chr6 102756761 102756968 -46760069 - B3 SINE B2 -5 211 2 3 1368 758 295 79 15 chr6 102757077 102757342 -46759695 - B4A SINE B4 -10 282 1 3 1368 267 31 0 0 chr6 102757792 102757824 -46759213 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1368 513 248 99 28 chr6 102757947 102758088 -46758949 + RSINE1 SINE B4 15 165 0 3 1368 204 231 0 0 chr6 102758088 102758140 -46758897 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1368 27 29 0 0 chr6 102758866 102758900 -46758137 + AT_rich Low_complexity Low_complexity 1 34 0 3 1368 581 296 0 20 chr6 102759045 102759117 -46757920 - B4 SINE B4 -4 288 219 3 1368 258 32 0 0 chr6 102759117 102759148 -46757889 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1368 581 296 0 20 chr6 102759148 102759223 -46757814 - B4 SINE B4 -74 218 144 3 1368 275 263 16 2 chr6 102759235 102759316 -46757721 - B4 SINE B4 -194 98 17 3 1368 241 196 0 0 chr6 102759679 102759725 -46757312 - MLT2B2 LTR ERVL -5 549 504 3 1368 249 339 76 53 chr6 102759857 102759988 -46757049 - MLT2B2 LTR ERVL -181 334 201 3 1368 424 68 0 0 chr6 102759971 102760030 -46757007 - B1_Mus2 SINE Alu -88 59 1 3 21 1569 273 43 26 chr6 102760043 102760551 -46756486 - RMER5 LTR ERV1 -2 532 16 3 1369 1601 210 28 16 chr6 102761135 102761864 -46755173 + L1_Mur1 LINE L1 872 1612 -4265 3 1369 28306 84 32 5 chr6 102761874 102766994 -46750043 + L1Md_F LINE L1 323 5580 -303 3 1369 1143 220 29 40 chr6 102767004 102767279 -46749758 + RLTR46 LTR ERVK 43 314 -6 3 1369 320 267 41 69 chr6 102767289 102767434 -46749603 + IAPEY3-int LTR ERVK 3 143 -7537 3 1369 3102 249 46 25 chr6 102767485 102768428 -46748609 + IAPEY3-int LTR ERVK 535 1496 -6184 3 1369 291 193 0 0 chr6 102768457 102768514 -46748523 + MMERVK10C-int LTR ERVK 447 503 -6039 3 1369 390 129 32 0 chr6 102768514 102768576 -46748461 + MMERVK10C-int LTR ERVK 5007 5070 -1472 3 1369 1282 56 0 0 chr6 102768572 102768734 -46748303 + MMERVK10C-int LTR ERVK 5461 5622 -1959 3 1369 36511 55 5 8 chr6 102768736 102775076 -46741961 - L1Md_T LINE L1 -1 6581 258 3 1369 583 106 0 0 chr6 102775076 102775161 -46741876 + MMERVK10C-int LTR ERVK 5615 5699 -1882 3 1369 2937 148 5 89 chr6 102775180 102775820 -46741217 + MMERVK10C-int LTR ERVK 6849 7434 -147 3 1369 2381 58 3 0 chr6 102775822 102776133 -46740904 + RLTR10-int LTR ERVK 1486 1797 -190 3 1369 703 102 0 0 chr6 102776158 102776266 -46740771 + MMERVK10C-int LTR ERVK 7474 7581 0 3 1369 1235 200 29 40 chr6 102776276 102776552 -46740485 + RLTR46 LTR ERVK 43 315 -5 3 1369 8227 46 2 0 chr6 102776571 102777563 -46739474 + L1Md_F2 LINE L1 5587 6580 -2 3 1369 1422 226 16 19 chr6 102777563 102777989 -46739048 + Lx4B LINE L1 1616 2041 -3845 3 1369 9818 158 42 19 chr6 102777974 102779030 -46738007 + Lx4B LINE L1 3975 5064 -813 3 1369 4577 123 31 67 chr6 102779030 102779863 -46737174 + RLTR13B4 LTR ERVK 1 803 0 3 1369 9818 178 43 15 chr6 102779863 102781791 -46735246 + Lx4B LINE L1 5065 7041 -17 3 1369 291 157 0 0 chr6 102782108 102782159 -46734878 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1369 363 301 189 7 chr6 102782592 102782883 -46734154 - L1MA6 LINE L1 -85 6215 5872 3 1369 2365 133 92 42 chr6 102784396 102784821 -46732216 - RLTR41 LTR ERV1 0 446 1 3 1369 210 219 0 0 chr6 102785009 102785050 -46731987 + L2a LINE L2 3373 3413 -13 3 1369 2645 85 28 63 chr6 102785444 102785870 -46731167 - RLTR10A LTR ERVK 0 411 1 3 1369 813 339 45 24 chr6 102786203 102786539 -46730498 - MLT1A0 LTR MaLR 0 365 23 3 1369 895 129 91 23 chr6 102786649 102786824 -46730213 - RLTR10A LTR ERVK -112 299 113 3 1369 985 251 18 52 chr6 102787759 102788045 -46728992 + Lx6 LINE L1 7165 7440 -20 3 1369 3089 58 5 2 chr6 102788481 102788876 -46728161 + MTA_Mm LTR MaLR 1 396 0 3 1369 277 302 50 16 chr6 102789583 102789704 -46727333 + L1MEb LINE L1 6 130 -5940 3 1369 839 327 35 21 chr6 102790403 102790743 -46726294 - Lx9 LINE L1 -147 7497 7153 3 1369 447 264 184 49 chr6 102790854 102790879 -46726158 + ORR1D2 LTR MaLR 1 26 -344 3 1369 1132 68 7 0 chr6 102790879 102791026 -46726011 + B1_Mus1 SINE Alu 1 148 0 3 1369 248 0 31 0 chr6 102791028 102791060 -46725977 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1369 447 264 184 49 chr6 102791060 102791357 -46725680 + ORR1D2 LTR MaLR 27 370 0 3 1369 22 0 0 0 chr6 102791461 102791483 -46725554 + AT_rich Low_complexity Low_complexity 1 22 0 3 1369 226 221 39 0 chr6 102791908 102791985 -46725052 + A-rich Low_complexity Low_complexity 4 83 0 4 1369 267 261 62 9 chr6 102792850 102792962 -46724075 - L1MA6 LINE L1 -54 6246 6129 4 1369 31 26 0 0 chr6 102792963 102793001 -46724036 + AT_rich Low_complexity Low_complexity 1 38 0 4 1369 375 23 0 0 chr6 102793183 102793227 -46723810 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 4 1369 1065 16 0 0 chr6 102793227 102793349 -46723688 + (TCTCCC)n Simple_repeat Simple_repeat 3 125 0 4 1369 626 320 39 15 chr6 102793548 102793754 -46723283 + B3A SINE B2 6 216 0 4 1369 30 27 0 0 chr6 102793852 102793889 -46723148 + AT_rich Low_complexity Low_complexity 1 37 0 4 1369 507 270 65 38 chr6 102794244 102794600 -46722437 - L1MA6 LINE L1 -6 6294 5926 4 1369 325 272 140 37 chr6 102794639 102794803 -46722234 - B3A SINE B2 -16 182 2 4 1369 381 22 0 0 chr6 102794955 102795001 -46722036 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1369 546 180 0 0 chr6 102795001 102795140 -46721897 + GA-rich Low_complexity Low_complexity 2 140 0 4 1369 217 278 19 0 chr6 102795420 102795474 -46721563 - PB1D7 SINE Alu 0 120 66 4 1369 415 278 104 0 chr6 102795474 102795705 -46721332 - L1MA6 LINE L1 -544 5768 5514 4 1369 992 304 54 88 chr6 102795925 102796149 -46720888 - L1MA6 LINE L1 -849 5294 5052 4 1369 7448 116 6 24 chr6 102796149 102797283 -46719754 - RLTR13D3 LTR ERVK 0 1114 1 4 1369 992 304 54 88 chr6 102797283 102797965 -46719072 - L1MA6 LINE L1 -1092 5051 4419 4 1369 309 333 81 44 chr6 102797998 102798318 -46718719 - L1MA6 LINE L1 -1741 4402 4071 4 1369 7348 73 4 6 chr6 102798338 102799705 -46717332 - L1Md_F2 LINE L1 -1 6581 5219 4 1369 203 0 0 36 chr6 102799830 102799858 -46717179 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 1369 2999 69 8 2 chr6 102800298 102800691 -46716346 - MTA_Mm LTR MaLR -1 395 1 4 1369 7067 84 28 71 chr6 102800691 102801839 -46715198 - MTA_Mm-int LTR MaLR 0 1098 1 4 1369 3051 56 15 3 chr6 102801839 102802230 -46714807 - MTA_Mm LTR MaLR 0 396 1 4 1369 7067 84 28 71 chr6 102802230 102803378 -46713659 - MTA_Mm-int LTR MaLR 0 1098 1 4 1369 3151 43 13 3 chr6 102803378 102803770 -46713267 - MTA_Mm LTR MaLR 0 396 1 4 1369 4983 190 40 98 chr6 102804118 102804397 -46712640 - RMER12 LTR ERVK -107 1215 928 4 1369 462 79 0 0 chr6 102804397 102804460 -46712577 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 1369 4983 190 40 98 chr6 102804460 102805469 -46711568 - RMER12 LTR ERVK -395 927 1 4 1369 949 350 81 29 chr6 102806375 102806756 -46710281 + Lx8 LINE L1 6541 6934 -539 4 1369 1191 245 80 20 chr6 102806756 102807106 -46709931 + ORR1D1 LTR MaLR 1 371 -3 4 1369 949 350 81 29 chr6 102807106 102807339 -46709698 + Lx8 LINE L1 6935 7187 -286 4 1369 449 177 40 66 chr6 102809847 102809998 -46707039 + RMER17B LTR ERVK 313 459 -499 4 1369 186 43 0 0 chr6 102810004 102810027 -46707010 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1369 7480 78 0 7 chr6 102810069 102811090 -46705947 + L1_Mus2 LINE L1 5555 6565 -1 4 1369 226 306 36 9 chr6 102811509 102811621 -46705416 - L1_Rod LINE L1 -3645 2202 2088 4 1369 265 266 96 52 chr6 102811860 102811995 -46705042 - L1_Mur1 LINE L1 -4131 1755 1615 4 1369 362 321 0 9 chr6 102812362 102812469 -46704568 + U6 snRNA snRNA 2 107 0 4 1369 21 36 0 0 chr6 102812534 102812562 -46704475 + AT_rich Low_complexity Low_complexity 1 28 0 4 1369 373 231 0 13 chr6 102813189 102813268 -46703769 + PB1D9 SINE Alu 41 118 -2 4 1369 477 294 169 44 chr6 102813379 102813674 -46703363 + MER90a LTR ERV1 1 332 -282 4 1369 733 230 63 53 chr6 102813681 102813888 -46703149 + B3 SINE B2 8 216 0 4 1369 484 87 11 21 chr6 102815713 102815807 -46701230 - L1Md_F2 LINE L1 -1 6581 6489 4 1369 809 194 6 61 chr6 102815812 102815993 -46701044 - ORR1C1 LTR MaLR -213 171 1 4 1369 5068 212 126 7 chr6 102815993 102817342 -46699695 - ORR1C1-int LTR MaLR 0 1509 1 4 1369 1158 236 106 79 chr6 102817342 102817710 -46699327 - ORR1C1 LTR MaLR 0 378 1 4 1369 773 329 52 33 chr6 102818548 102818972 -46698065 - MER57F LTR ERV1 -4 432 1 4 1369 423 0 0 0 chr6 102819182 102819229 -46697808 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1369 297 371 0 9 chr6 102819249 102819355 -46697682 - B4A SINE B4 -15 277 173 4 1369 198 103 0 0 chr6 102819488 102819517 -46697520 + (CTAG)n Simple_repeat Simple_repeat 1 29 0 4 1369 268 133 39 39 chr6 102819766 102819868 -46697169 + (CAGAGA)n Simple_repeat Simple_repeat 5 106 0 4 1369 186 179 0 0 chr6 102820108 102820164 -46696873 + (CAGA)n Simple_repeat Simple_repeat 1 56 0 4 1369 738 302 53 25 chr6 102820765 102821047 -46695990 + B4 SINE B4 1 290 -2 4 1369 2451 208 34 55 chr6 102821379 102821557 -46695480 + RMER15 LTR ERVL 1 151 -424 4 1369 190 0 67 0 chr6 102821557 102821587 -46695450 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1369 2451 208 34 55 chr6 102821587 102821993 -46695044 + RMER15 LTR ERVL 152 573 -2 4 1369 394 186 0 28 chr6 102822313 102822385 -46694652 + RMER15 LTR ERVL 504 573 -2 4 1369 253 316 62 49 chr6 102822957 102823263 -46693774 + L1ME3A LINE L1 5630 5939 -234 4 1369 710 45 36 0 chr6 102824073 102824184 -46692853 + (TC)n Simple_repeat Simple_repeat 1 115 0 4 1369 676 280 43 32 chr6 102824189 102824466 -46692571 - L1_Rod LINE L1 -17 5830 5551 4 1369 1620 267 31 124 chr6 102825486 102826216 -46690821 + Lx5 LINE L1 6109 6780 -270 4 1369 218 118 0 38 chr6 102826526 102826579 -46690458 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 4 1369 370 274 25 25 chr6 102826770 102826890 -46690147 + MTEa LTR MaLR 258 377 -2 4 1369 1915 116 0 0 chr6 102828223 102828498 -46688539 + MT2B2 LTR ERVL 297 571 -13 4 1369 2027 112 72 15 chr6 102828518 102828853 -46688184 - ORR1B1 LTR MaLR 0 394 41 4 1369 8853 164 34 102 chr6 102828858 102830951 -46686086 - ORR1B1-int LTR MaLR -3 1960 9 4 1369 768 180 132 22 chr6 102830946 102831128 -46685909 - ORR1B1 LTR MaLR -149 245 44 4 1369 983 188 127 0 chr6 102831943 102832156 -46684881 + RLTR18B LTR ERVK 6 245 -267 4 1369 1118 306 3 3 chr6 102832183 102832491 -46684546 + RLTR18B LTR ERVK 202 509 -3 4 1369 189 0 0 0 chr6 102832538 102832559 -46684478 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1369 721 282 181 96 chr6 102832909 102833325 -46683712 + Lx9 LINE L1 7051 7481 -163 4 1369 471 113 0 0 chr6 102833325 102833396 -46683641 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1369 721 282 181 96 chr6 102833396 102833520 -46683517 + Lx9 LINE L1 7482 7636 -8 4 1369 270 95 0 0 chr6 102834154 102834196 -46682841 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1369 736 68 25 0 chr6 102835121 102835252 -46681785 + L1_Mm LINE L1 1557 1699 -4187 4 1369 1800 68 8 0 chr6 102835727 102835963 -46681074 - L1Md_F2 LINE L1 -1 6581 6344 4 1369 3743 78 13 19 chr6 102836105 102836638 -46680399 - L1Md_F2 LINE L1 0 6582 6053 4 1369 21 0 0 0 chr6 102837096 102837117 -46679920 + AT_rich Low_complexity Low_complexity 1 21 0 4 1369 6957 137 22 8 chr6 102839055 102840218 -46676819 - Lx LINE L1 -4 6650 5483 4 1369 523 91 57 0 chr6 102840215 102840303 -46676734 - Lx LINE L1 -320 6334 6242 4 1369 777 164 0 92 chr6 102840483 102840678 -46676359 - Lx7 LINE L1 0 7696 7520 4 1369 4339 221 59 13 chr6 102840692 102842322 -46674715 - Lx6 LINE L1 -867 6593 4886 4 1369 1662 194 64 45 chr6 102842321 102842791 -46674246 + Lx6 LINE L1 4380 4858 -1022 4 1369 420 284 97 44 chr6 102843083 102843348 -46673689 - L1M4 LINE L1 -461 5710 5436 4 1369 387 0 0 0 chr6 102843689 102843732 -46673305 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1369 461 266 23 8 chr6 102844959 102845080 -46671957 + B3 SINE B2 1 120 -73 4 1369 522 230 149 121 chr6 102845090 102845421 -46671616 - MT2B2 LTR ERVL -5 579 64 4 1369 226 284 0 75 chr6 102845352 102845432 -46671605 - MTE2b LTR MaLR -250 129 56 4 1369 4524 73 2 2 chr6 102845806 102846392 -46670645 + L1_Mus1 LINE L1 5978 6563 -4 4 1369 969 100 42 14 chr6 102847043 102847185 -46669852 - B1_Mus2 SINE Alu 0 147 2 4 1369 403 216 143 8 chr6 102847808 102847934 -46669103 - MLT1D LTR MaLR 0 505 363 4 1369 354 378 13 40 chr6 102848038 102848238 -46668799 - B4A SINE B4 -1 291 104 4 1369 440 293 0 10 chr6 102848270 102848370 -46668667 - B3 SINE B2 -5 211 113 4 1369 1421 262 71 28 chr6 102848425 102848817 -46668220 + MTD LTR MaLR 3 411 -8 4 1369 564 337 14 28 chr6 102849375 102849586 -46667451 - MER20 DNA MER1_type -6 213 6 4 1369 304 362 20 0 chr6 102850570 102850732 -46666305 - B4A SINE B4 -75 217 5 4 1369 241 227 0 0 chr6 102850827 102850871 -46666166 - B1_Mus1 SINE Alu -92 56 13 4 1369 790 86 0 0 chr6 102850867 102850972 -46666065 + B1_Mus1 SINE Alu 35 139 -9 4 1369 405 0 0 0 chr6 102850972 102851017 -46666020 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 1369 22 56 0 0 chr6 102851049 102851085 -46665952 + AT_rich Low_complexity Low_complexity 1 36 0 4 1369 608 93 10 0 chr6 102851136 102851233 -46665804 + (GAGAA)n Simple_repeat Simple_repeat 4 101 0 4 1369 1083 255 20 24 chr6 102852280 102852577 -46664460 - Lx6 LINE L1 -1166 6294 5999 4 1369 2088 225 11 8 chr6 102852594 102853070 -46663967 - Lx6 LINE L1 -138 5742 5266 4 1369 225 83 0 0 chr6 102853079 102853115 -46663922 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1369 413 116 14 0 chr6 102854655 102854724 -46662313 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1369 35 63 0 0 chr6 102854806 102854869 -46662168 + AT_rich Low_complexity Low_complexity 1 63 0 4 1369 207 0 0 0 chr6 102855094 102855117 -46661920 + (CG)n Simple_repeat Simple_repeat 1 23 0 4 1369 702 308 15 5 chr6 102855129 102855325 -46661712 - B3 SINE B2 -13 203 6 4 1369 21 0 0 0 chr6 102855325 102855346 -46661691 + AT_rich Low_complexity Low_complexity 1 21 0 4 1369 671 283 15 30 chr6 102855351 102855548 -46661489 - B3A SINE B2 0 198 5 4 1369 432 67 0 0 chr6 102855683 102855743 -46661294 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1369 357 62 0 0 chr6 102855810 102855858 -46661179 + (TTG)n Simple_repeat Simple_repeat 1 48 0 4 1369 2343 194 63 8 chr6 102855912 102856407 -46660630 - Lx2B LINE L1 -119 6881 6360 4 1369 1795 174 59 10 chr6 102856400 102856788 -46660249 + Lx2B LINE L1 5957 6363 -637 4 1369 501 17 0 0 chr6 102858630 102858688 -46658349 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1369 378 0 0 0 chr6 102858688 102858729 -46658308 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1369 193 0 29 59 chr6 102858732 102858766 -46658271 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 4 1369 249 211 0 19 chr6 102858903 102858956 -46658081 - L1MC4 LINE L1 -575 7467 7416 4 1369 751 157 0 61 chr6 102858983 102859146 -46657891 - L1Md_F3 LINE L1 0 6584 6432 4 1369 2766 73 16 3 chr6 102859166 102859538 -46657499 + L1Md_F2 LINE L1 6206 6582 0 4 1369 315 26 0 0 chr6 102859574 102859612 -46657425 - tRNA-Met_ tRNA tRNA -38 38 1 4 1369 26 30 0 0 chr6 102859623 102859656 -46657381 + AT_rich Low_complexity Low_complexity 1 33 0 4 1369 454 305 76 52 chr6 102859691 102859902 -46657135 + B3A SINE B2 1 216 0 5 1369 7092 85 61 3 chr6 102860315 102861430 -46655607 + L1_Mus3 LINE L1 5465 6638 0 5 1369 504 0 0 0 chr6 102861870 102861926 -46655111 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 5 1369 511 358 80 30 chr6 102861959 102862385 -46654652 + MT2A LTR ERVL 1 447 -86 5 1369 1660 195 55 87 chr6 102862397 102862801 -46654236 + RLTR41 LTR ERV1 52 442 -4 5 1369 189 171 0 0 chr6 102862936 102862971 -46654066 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 5 1369 375 315 50 29 chr6 102863833 102864072 -46652965 + L2 LINE L2 2836 3079 -340 5 1369 993 52 125 0 chr6 102864243 102864379 -46652658 - L1Md_T LINE L1 -3 6579 6427 5 1369 389 343 5 45 chr6 102864766 102864989 -46652048 - B3 SINE B2 -1 215 2 5 1369 342 199 53 40 chr6 102865317 102865469 -46651568 + (TCTA)n Simple_repeat Simple_repeat 4 157 0 5 1369 274 433 40 77 chr6 102866674 102867079 -46649958 - MLT1L LTR MaLR -127 483 94 5 1369 1055 95 0 52 chr6 102867208 102867363 -46649674 - B1_Mus1 SINE Alu -1 147 1 5 1369 322 362 21 0 chr6 102867523 102867664 -46649373 + Lx8 LINE L1 7185 7328 -145 5 1369 774 41 172 0 chr6 102867866 102867988 -46649049 - B1_Mus1 SINE Alu 0 148 6 5 1369 258 226 140 131 chr6 102867899 102868006 -46649031 - MT2B LTR ERVL -337 264 157 5 1369 230 324 28 47 chr6 102868019 102868126 -46648911 + PB1 SINE Alu 21 125 -2 5 1369 2570 30 0 0 chr6 102868663 102868967 -46648070 - L1_Mm LINE L1 -712 5171 4868 5 1369 1539 52 0 0 chr6 102868967 102869161 -46647876 + L1Md_A LINE L1 6389 6582 0 5 1369 1263 169 8 16 chr6 102869170 102869417 -46647620 + RLTR31_Mm LTR ERVK 92 336 -225 5 1369 36402 32 3 8 chr6 102869449 102874605 -46642432 + L1Md_T LINE L1 462 5585 -298 5 1369 8283 36 2 0 chr6 102874606 102875596 -46641441 + L1Md_T LINE L1 5587 6578 -4 5 1369 29556 27 2 1 chr6 102875603 102879144 -46637893 + L1Md_T LINE L1 2041 5586 -297 5 1369 8060 48 0 3 chr6 102879144 102880143 -46636894 + L1Md_T LINE L1 5587 6582 0 5 1369 1673 52 0 0 chr6 102880143 102880353 -46636684 - L1_Mm LINE L1 -1007 4876 4667 5 1369 533 269 112 15 chr6 102880378 102880574 -46636463 + B3 SINE B2 2 216 0 5 1369 339 25 0 0 chr6 102881164 102881204 -46635833 + (TATG)n Simple_repeat Simple_repeat 4 43 0 5 1369 1720 231 54 73 chr6 102881470 102881992 -46635045 + RLTR18B LTR ERVK 1 512 0 5 1369 1197 237 55 7 chr6 102882109 102882397 -46634640 + RMER12 LTR ERVK 1 307 -1501 5 1369 2488 194 137 102 chr6 102882441 102883187 -46633850 + RMER12 LTR ERVK 447 1218 -104 5 1369 441 0 0 0 chr6 102883824 102883873 -46633164 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1369 252 0 0 0 chr6 102883873 102883900 -46633137 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1369 730 355 43 39 chr6 102883944 102884223 -46632814 - B4A SINE B4 0 292 13 5 1369 366 80 0 0 chr6 102884282 102884332 -46632705 + (TCC)n Simple_repeat Simple_repeat 2 51 0 5 1369 180 0 0 0 chr6 102884345 102884365 -46632672 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1369 2517 108 8 10 chr6 102884366 102884749 -46632288 - Lx LINE L1 -17 6637 6256 5 1369 4094 180 33 4 chr6 102885391 102886144 -46630893 - Lx2B LINE L1 -128 6872 6098 5 1369 204 40 0 0 chr6 102886144 102886169 -46630868 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1369 443 238 87 0 chr6 102887550 102887676 -46629361 - Lx2B LINE L1 -890 6107 5971 5 1369 6024 102 89 0 chr6 102887711 102888991 -46628046 + L1_Mus3 LINE L1 5243 6636 -2 5 1369 520 120 14 0 chr6 102888981 102889080 -46627957 + Lx2A1 LINE L1 5263 5363 -517 5 1369 4392 60 0 0 chr6 102889075 102889719 -46627318 - L1Md_F2 LINE L1 -613 5971 5328 5 1369 4795 49 0 2 chr6 102889719 102890312 -46626725 + L1Md_F2 LINE L1 5989 6580 -2 5 1369 999 64 49 28 chr6 102890328 102890472 -46626565 + B1_Mm SINE Alu 1 147 0 5 1369 600 84 0 0 chr6 102890475 102890558 -46626479 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 5 1369 2648 155 43 1 chr6 102890560 102891160 -46625877 + Lx2A1 LINE L1 5361 5974 -1034 5 171 701 312 67 43 chr6 102891173 102891583 -46625454 + MTD LTR MaLR 6 405 -14 5 1370 293 303 101 0 chr6 102891584 102891693 -46625344 + MTD-int LTR MaLR 3 122 -1458 5 1370 2565 103 30 0 chr6 102891699 102892068 -46624969 + Lx3_Mus LINE L1 6614 6993 -16 5 1370 1068 279 28 77 chr6 102892087 102892606 -46624431 + MTD-int LTR MaLR 105 676 -582 5 1370 338 348 47 32 chr6 102892605 102892795 -46624242 - MTC LTR MaLR -182 239 47 5 1370 278 271 41 33 chr6 102893705 102893827 -46623210 - L1M5 LINE L1 -485 5755 5633 5 1370 1182 93 0 0 chr6 102894265 102894427 -46622610 - Lx3A LINE L1 -1233 5748 5587 5 1370 3500 127 7 31 chr6 102894429 102895008 -46622029 + Lx3B LINE L1 6408 6972 -1 5 1370 27 49 0 0 chr6 102895009 102895050 -46621987 + AT_rich Low_complexity Low_complexity 1 41 0 5 1370 210 37 0 0 chr6 102897227 102897254 -46619783 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1370 411 355 0 16 chr6 102898000 102898123 -46618914 + B1F SINE Alu 2 122 -27 5 1370 22 0 0 0 chr6 102899637 102899659 -46617378 + AT_rich Low_complexity Low_complexity 1 22 0 5 1370 248 357 26 26 chr6 102900473 102900588 -46616449 + ORR1E LTR MaLR 35 149 -210 5 1370 276 53 0 0 chr6 102900857 102900895 -46616142 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1370 6119 64 3 0 chr6 102901092 102901875 -46615162 + L1Md_F2 LINE L1 5786 6570 -12 5 1370 1185 244 174 21 chr6 102902010 102902426 -46614611 - RCHARR1 DNA MER1_type 0 974 495 5 1370 430 313 104 107 chr6 102903376 102903855 -46613182 - L1MD1 LINE L1 -180 6062 5585 5 1370 738 300 58 14 chr6 102903856 102904201 -46612836 + L1MA6 LINE L1 5917 6276 -24 5 1370 270 281 0 35 chr6 102904240 102904325 -46612712 - L1MD1 LINE L1 -653 5589 5508 5 1370 28 0 0 0 chr6 102904366 102904394 -46612643 + AT_rich Low_complexity Low_complexity 1 28 0 5 1370 271 53 0 51 chr6 102904394 102904453 -46612584 - Lx3_Mus LINE L1 -8 7001 6946 5 1370 364 236 147 31 chr6 102904453 102904707 -46612330 - L1MD1 LINE L1 -814 5428 5146 5 1370 545 76 13 0 chr6 102904911 102904990 -46612047 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 1370 226 171 0 0 chr6 102905040 102905075 -46611962 - B3 SINE B2 -92 124 90 5 1370 1594 303 62 30 chr6 102905095 102906224 -46610813 - L1MD1 LINE L1 -1748 4132 2999 5 1370 3829 55 2 0 chr6 102906224 102906701 -46610336 + L1Md_F2 LINE L1 6103 6580 -2 5 1370 319 359 63 59 chr6 102907154 102907441 -46609596 - HAL1 LINE L1 -1047 1460 1173 5 1370 663 161 0 0 chr6 102907577 102907840 -46609197 + (TA)n Simple_repeat Simple_repeat 1 263 0 5 1370 21 0 0 0 chr6 102907840 102907861 -46609176 + AT_rich Low_complexity Low_complexity 1 21 0 5 1370 279 0 0 0 chr6 102907861 102907892 -46609145 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1370 368 350 38 31 chr6 102910085 102910374 -46606663 - B4A SINE B4 0 292 2 5 1370 274 313 73 86 chr6 102910387 102910688 -46606349 + L2a LINE L2 3130 3426 0 5 1370 227 296 14 0 chr6 102910906 102910977 -46606060 - L1ME3A LINE L1 -77 6096 6025 5 1370 3321 53 7 0 chr6 102911196 102911611 -46605426 + L1_Mus1 LINE L1 6150 6567 0 5 1370 189 0 0 0 chr6 102911941 102911962 -46605075 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1370 716 239 170 11 chr6 102912067 102912350 -46604687 + Lx9 LINE L1 7315 7642 -2 5 1370 744 295 88 55 chr6 102913423 102913857 -46603180 + Lx9 LINE L1 6959 7406 -238 5 1370 386 246 8 0 chr6 102913883 102914013 -46603024 + (TG)n Simple_repeat Simple_repeat 2 132 0 5 1370 280 270 67 11 chr6 102914792 102914882 -46602155 - MLT1A1 LTR MaLR -305 103 9 5 1370 342 0 0 0 chr6 102915741 102915779 -46601258 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 1370 30 0 0 0 chr6 102916572 102916602 -46600435 + AT_rich Low_complexity Low_complexity 1 30 0 5 1370 361 343 76 12 chr6 102916697 102916868 -46600169 - B4A SINE B4 -76 216 35 5 1370 1106 130 9 24 chr6 102919368 102919565 -46597472 - RLTR13C2 LTR ERVK -842 191 1 5 1370 491 252 208 60 chr6 102920060 102920251 -46596786 + B3A SINE B2 2 197 -1 5 1370 3026 93 2 0 chr6 102921761 102922181 -46594856 - BGLII LTR ERVK 0 421 1 5 1370 2926 85 96 54 chr6 102923398 102923896 -46593141 - MURVY-LTR LTR ERV1 0 519 1 5 1370 6719 151 10 16 chr6 102924078 102925229 -46591808 - Lx2B LINE L1 0 7000 5856 5 1370 27 29 0 0 chr6 102925334 102925368 -46591669 + AT_rich Low_complexity Low_complexity 1 34 0 5 1370 619 212 17 0 chr6 102925380 102925498 -46591539 + MTC LTR MaLR 5 124 -297 5 1370 264 95 0 0 chr6 102925506 102925548 -46591489 - Lx4A LINE L1 -2 7056 7015 5 1370 555 224 8 46 chr6 102925548 102925679 -46591358 + MTC LTR MaLR 107 232 -189 5 1370 4435 42 11 0 chr6 102926315 102926858 -46590179 + L1Md_F3 LINE L1 6034 6582 -2 5 1370 1183 68 0 0 chr6 102926892 102927039 -46589998 + B1_Mm SINE Alu 1 147 0 5 1370 207 0 0 0 chr6 102927039 102927062 -46589975 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1370 996 321 61 12 chr6 102927695 102928266 -46588771 - Lx9 LINE L1 -1731 5913 5301 5 1370 750 288 118 30 chr6 102928991 102929489 -46587548 + L1MA6 LINE L1 5758 6299 -1 5 1370 710 278 26 57 chr6 102930152 102930381 -46586656 + B4 SINE B4 2 223 -69 5 1370 207 167 0 40 chr6 102930383 102930433 -46586604 + A-rich Low_complexity Low_complexity 3 50 0 5 1370 26 0 0 0 chr6 102931171 102931197 -46585840 + AT_rich Low_complexity Low_complexity 1 26 0 5 1370 5034 60 0 0 chr6 102931221 102931852 -46585185 - L1Md_T LINE L1 -1 6581 5951 5 1370 747 108 0 0 chr6 102933349 102933460 -46583577 + (TCC)n Simple_repeat Simple_repeat 3 113 0 5 1370 306 0 0 0 chr6 102933754 102933788 -46583249 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1370 492 72 0 0 chr6 102933789 102933858 -46583179 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 1370 306 250 67 0 chr6 102933896 102934000 -46583037 + L1MA6 LINE L1 6029 6139 -161 5 1370 23 33 0 0 chr6 102934102 102934132 -46582905 + AT_rich Low_complexity Low_complexity 1 30 0 5 1370 223 338 0 0 chr6 102934771 102934839 -46582198 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1370 7176 119 24 11 chr6 102934959 102935735 -46581302 - L1_Mus4 LINE L1 0 6636 5849 5 1370 2235 83 119 11 chr6 102935735 102936087 -46580950 - RLTR10 LTR ERVK 0 390 1 6 1370 7176 162 17 8 chr6 102936087 102937314 -46579723 - L1_Mus4 LINE L1 -35 5848 4605 5 1370 5032 138 12 2 chr6 102937309 102938144 -46578893 + L1_Mur2 LINE L1 3757 4599 -1278 6 1370 692 311 28 6 chr6 102938235 102938413 -46578624 + ID_B1 SINE B4 2 183 -41 6 1370 4206 162 35 7 chr6 102941326 102942076 -46574961 - Lx2B LINE L1 -19 6981 6211 6 1370 404 333 73 0 chr6 102942938 102943115 -46573922 - Lx8 LINE L1 -1065 6408 6219 6 1370 290 327 57 57 chr6 102943473 102943632 -46573405 + MIRb SINE MIR 45 203 -65 6 1370 256 317 9 37 chr6 102943625 102943733 -46573304 + MIRb SINE MIR 156 260 -8 6 1370 33 43 0 0 chr6 102944739 102944786 -46572251 + AT_rich Low_complexity Low_complexity 1 47 0 6 1370 405 305 100 15 chr6 102944819 102944949 -46572088 - RSINE1 SINE B4 -23 142 2 6 1370 182 83 0 53 chr6 102945313 102945351 -46571686 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 6 1370 802 161 21 7 chr6 102945355 102945499 -46571538 - B1_Mus1 SINE Alu -2 146 1 6 1370 801 262 29 5 chr6 102945611 102945818 -46571219 - B3 SINE B2 -4 212 1 6 1370 204 40 0 0 chr6 102946145 102946170 -46570867 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1370 381 333 124 71 chr6 102946617 102946670 -46570367 + L1MB8 LINE L1 5618 5668 -510 6 1370 8846 8 0 0 chr6 102946670 102947655 -46569382 + L1Md_T LINE L1 5598 6582 0 6 1370 381 333 124 71 chr6 102947655 102947984 -46569053 + L1MB8 LINE L1 5669 6021 -157 6 1370 1128 88 0 0 chr6 102947984 102948132 -46568905 - B1_Mus1 SINE Alu 0 148 1 6 1370 381 333 124 71 chr6 102948132 102948272 -46568765 + L1MB8 LINE L1 6022 6169 -9 6 1370 23 33 0 0 chr6 102948281 102948311 -46568726 + AT_rich Low_complexity Low_complexity 1 30 0 6 1370 715 205 0 0 chr6 102949953 102950075 -46566962 + B1_Mur4 SINE Alu 23 144 -6 6 1370 543 108 0 0 chr6 102950075 102950168 -46566869 + (GA)n Simple_repeat Simple_repeat 1 93 0 6 1370 1481 183 144 14 chr6 102950276 102950844 -46566193 - L1_Mur2 LINE L1 -4347 1530 889 6 1370 429 260 204 14 chr6 102951089 102951256 -46565781 - Lx9 LINE L1 -8 7636 7418 6 1370 276 30 0 0 chr6 102951256 102951289 -46565748 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1370 429 260 204 14 chr6 102951289 102951406 -46565631 - Lx9 LINE L1 -227 7417 7298 6 1370 306 0 0 0 chr6 102951462 102951496 -46565541 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1370 414 0 0 0 chr6 102951496 102951541 -46565496 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1370 3615 126 11 16 chr6 102952198 102952771 -46564266 - Lx2 LINE L1 0 6997 6428 6 1370 522 0 0 0 chr6 102953239 102953297 -46563740 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1370 429 20 0 0 chr6 102953297 102953347 -46563690 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1370 675 273 26 0 chr6 102953486 102953661 -46563376 - B3A SINE B2 -38 178 1 6 1370 766 296 55 14 chr6 102954476 102954695 -46562342 - MTEb LTR MaLR -113 266 39 6 1370 315 0 0 0 chr6 102954725 102954760 -46562277 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 6 1370 1913 118 35 0 chr6 102954760 102955048 -46561989 - L1_Mus3 LINE L1 -8 6630 6333 6 1370 506 326 0 14 chr6 102955224 102955370 -46561667 + ID_B1 SINE B4 81 224 0 6 1370 459 29 0 42 chr6 102956004 102956076 -46560961 + (GAAAA)n Simple_repeat Simple_repeat 2 70 0 6 1370 254 277 36 3 chr6 102956255 102956389 -46560648 + L1MC2 LINE L1 5751 5887 -446 6 1370 2523 200 66 17 chr6 102956389 102956964 -46560073 - RMER6C LTR ERVK 0 690 88 6 1370 347 267 44 44 chr6 102956964 102957101 -46559936 + L1MC2 LINE L1 5882 6018 -326 6 1370 903 279 39 36 chr6 102957113 102957447 -46559590 + L1MC1 LINE L1 5987 6321 -12 6 1370 348 125 130 43 chr6 102957941 102958033 -46559004 + Lx2 LINE L1 6896 6995 -2 6 1370 378 0 0 0 chr6 102958843 102958885 -46558152 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1370 492 18 0 0 chr6 102958973 102959030 -46558007 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 6 1370 526 327 37 0 chr6 102959098 102959260 -46557777 - B4 SINE B4 -123 169 2 6 1370 30 0 0 0 chr6 102959604 102959634 -46557403 + AT_rich Low_complexity Low_complexity 1 30 0 6 1370 3095 236 98 16 chr6 102959810 102960360 -46556677 - Lx6 LINE L1 -6 7454 6882 6 1370 777 22 0 0 chr6 102960360 102960451 -46556586 + (TC)n Simple_repeat Simple_repeat 1 91 0 6 1370 3095 236 98 16 chr6 102960451 102960659 -46556378 - Lx6 LINE L1 -579 6881 6634 6 1370 747 293 35 35 chr6 102962709 102962964 -46554073 - Lx6 LINE L1 -26 7434 7180 6 1370 285 267 0 82 chr6 102962944 102963042 -46553995 + Lx6 LINE L1 7076 7165 -295 6 1370 309 372 54 7 chr6 102963118 102963267 -46553770 + MLT1A0 LTR MaLR 210 365 0 6 1370 189 74 0 0 chr6 102963713 102963740 -46553297 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 6 1370 321 89 0 0 chr6 102963771 102963816 -46553221 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1370 347 290 76 13 chr6 102964201 102964358 -46552679 - L3 LINE CR1 -177 4312 4146 6 1370 202 305 0 137 chr6 102964663 102964758 -46552279 - MIRb SINE MIR -153 115 34 6 1370 616 308 66 0 chr6 102965167 102965365 -46551672 - B3 SINE B2 -5 211 1 6 1370 5080 72 19 1 chr6 102965474 102966156 -46550881 + L1Md_F2 LINE L1 5877 6570 -12 6 1370 231 61 0 0 chr6 102966159 102966192 -46550845 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 1370 1087 186 180 11 chr6 102966192 102966453 -46550584 + ORR1D1 LTR MaLR 17 321 -53 6 1370 28 0 0 0 chr6 102966453 102966481 -46550556 + AT_rich Low_complexity Low_complexity 1 28 0 6 1370 608 213 22 22 chr6 102966721 102966860 -46550177 - RLTR25A LTR ERVK 0 1028 890 6 1370 2653 218 75 21 chr6 102966847 102967610 -46549427 - RLTR25A LTR ERVK -247 781 1 6 1370 1167 86 10 36 chr6 102967651 102967844 -46549193 + L1_Mus3 LINE L1 6451 6638 0 6 1370 414 0 0 0 chr6 102969586 102969632 -46547405 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1370 183 80 0 0 chr6 102969648 102969673 -46547364 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 6 1370 909 312 47 31 chr6 102969958 102970345 -46546692 - Lx8 LINE L1 -365 7108 6716 6 1370 408 40 0 0 chr6 102970414 102970464 -46546573 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1370 24 91 0 0 chr6 102970753 102970819 -46546218 + AT_rich Low_complexity Low_complexity 1 66 0 6 1370 476 331 15 0 chr6 102970869 102971005 -46546032 + RSINE1 SINE B4 11 148 -17 6 1370 392 294 19 12 chr6 102973378 102973550 -46543487 + MER2 DNA MER2_type 171 345 0 6 1370 693 31 0 0 chr6 102973839 102973937 -46543100 - L1Md_T LINE L1 -1 6581 6484 6 1370 192 374 61 33 chr6 102974129 102974309 -46542728 + L2c LINE L2 2917 3101 -286 6 1370 284 219 83 37 chr6 102974608 102974717 -46542320 - L1MC2 LINE L1 -104 6240 6127 6 1370 22 0 0 0 chr6 102975246 102975268 -46541769 + AT_rich Low_complexity Low_complexity 1 22 0 6 1370 260 239 42 35 chr6 102975339 102975482 -46541555 - L1M5 LINE L1 -429 5811 5668 6 1370 261 0 0 0 chr6 102976628 102976657 -46540380 + (TGG)n Simple_repeat Simple_repeat 1 29 0 6 1370 355 297 62 75 chr6 102976836 102976996 -46540041 + B3A SINE B2 4 161 -37 6 1370 392 55 0 18 chr6 102976999 102977055 -46539982 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1370 25 31 0 0 chr6 102977065 102977097 -46539940 + AT_rich Low_complexity Low_complexity 1 32 0 6 1370 426 318 64 25 chr6 102977816 102978019 -46539018 - MER20 DNA MER1_type -7 212 2 6 1370 279 215 0 0 chr6 102980052 102980117 -46536920 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1370 988 275 92 23 chr6 102981001 102981347 -46535690 + ORR1D2 LTR MaLR 1 370 0 6 1370 302 325 9 37 chr6 102981539 102981753 -46535284 - L1M2 LINE L1 -771 5372 5165 6 1370 1147 126 32 18 chr6 102982326 102982544 -46534493 + RMER17C LTR ERVK 190 410 0 6 1370 180 200 0 0 chr6 102983777 102983817 -46533220 + G-rich Low_complexity Low_complexity 1 40 0 6 1370 629 259 0 20 chr6 102984274 102984420 -46532617 - Charlie4a DNA MER1_type 0 508 366 6 1370 240 263 12 50 chr6 102985657 102985737 -46531300 + MER2 DNA MER2_type 93 169 -176 6 1370 269 305 147 0 chr6 102985801 102985896 -46531141 + MTE2b LTR MaLR 1 109 -270 6 1370 181 261 0 0 chr6 102985940 102985986 -46531051 - MIRc SINE MIR -144 124 79 6 1370 22 35 0 0 chr6 102986236 102986265 -46530772 + AT_rich Low_complexity Low_complexity 1 29 0 6 1370 28 48 0 0 chr6 102986336 102986378 -46530659 + AT_rich Low_complexity Low_complexity 1 42 0 6 1370 784 208 77 5 chr6 102986647 102986855 -46530182 - URR1B DNA MER1_type 0 225 3 6 1370 498 162 26 0 chr6 102987466 102987583 -46529454 + (TA)n Simple_repeat Simple_repeat 2 121 0 6 1370 459 0 0 0 chr6 102988609 102988660 -46528377 + (TC)n Simple_repeat Simple_repeat 1 51 0 6 1370 351 0 0 0 chr6 102988660 102988698 -46528339 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1370 4281 259 36 28 chr6 102988723 102989955 -46527082 - Lx9 LINE L1 -2 7642 6401 6 1370 459 0 0 0 chr6 102990024 102990075 -46526962 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1370 1987 222 51 57 chr6 102990611 102990665 -46526372 + RLTR31_Mm LTR ERVK 1 53 -508 6 1370 1860 119 9 59 chr6 102990665 102991004 -46526033 + RLTRETN_Mm LTR ERVK 1 322 0 6 1370 1987 222 51 57 chr6 102991004 102991513 -46525524 + RLTR31_Mm LTR ERVK 54 561 0 6 1370 566 228 4 1 chr6 102992821 102992945 -46524092 + MTE2b LTR MaLR 1 127 -252 6 1370 1211 288 27 6 chr6 102992961 102993290 -46523747 + ORR1D2 LTR MaLR 25 360 -10 6 1370 468 322 100 48 chr6 102993297 102993548 -46523489 + MTE2b LTR MaLR 116 379 0 6 1370 248 335 104 55 chr6 102993563 102993746 -46523291 + MIRc SINE MIR 15 206 -62 6 1370 282 315 45 0 chr6 102994432 102994543 -46522494 - PB1D10 SINE Alu -1 116 1 6 1370 258 326 58 0 chr6 102994924 102995010 -46522027 - B1F SINE Alu -23 126 36 6 1370 432 0 0 0 chr6 102995416 102995464 -46521573 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1370 23 54 0 0 chr6 102997524 102997561 -46519476 + AT_rich Low_complexity Low_complexity 1 37 0 6 1370 316 294 152 0 chr6 102997742 102997834 -46519203 + B3A SINE B2 17 122 -76 6 1370 442 267 157 11 chr6 102997943 102998121 -46518916 - B3 SINE B2 -9 207 4 7 1370 643 258 36 24 chr6 102998211 102998378 -46518659 + B3 SINE B2 48 216 0 7 1370 288 0 0 0 chr6 102998603 102998635 -46518402 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1370 716 225 102 26 chr6 102999016 102999281 -46517756 - BGLII_B LTR ERVK 0 441 157 7 1370 1237 177 7 22 chr6 102999283 102999560 -46517477 - BGLII_B LTR ERVK -168 273 1 7 1370 225 0 0 0 chr6 103000088 103000113 -46516924 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1370 652 325 34 21 chr6 103000389 103000628 -46516409 - Lx8 LINE L1 -400 7073 6832 2 1370 352 315 20 40 chr6 103000636 103000788 -46516249 - Lx8 LINE L1 -850 6623 6475 2 1370 496 346 12 45 chr6 103000802 103001047 -46515990 + Lx8 LINE L1 6625 6861 -612 2 1370 596 328 78 0 chr6 103001552 103001744 -46515293 - B3 SINE B2 0 216 10 3 1370 225 222 0 0 chr6 103001778 103001841 -46515196 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1370 513 284 47 16 chr6 103002376 103002505 -46514532 - ETnERV2-int LTR ERVK -204 7202 7070 5 1370 1924 31 0 0 chr6 103002506 103002729 -46514308 - L1Md_F2 LINE L1 -270 6312 6090 6 1370 2169 51 4 0 chr6 103002729 103003003 -46514034 + L1Md_F2 LINE L1 6308 6582 0 6 1370 912 316 75 30 chr6 103003073 103003946 -46513091 + L1M2 LINE L1 4614 5538 -342 7 1370 216 171 0 0 chr6 103004031 103004072 -46512965 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1370 427 356 28 39 chr6 103004282 103004463 -46512574 - B3A SINE B2 -11 187 9 9 1370 293 0 27 0 chr6 103005183 103005220 -46511817 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1370 663 116 0 0 chr6 103005747 103005859 -46511178 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1370 272 27 27 0 chr6 103005859 103005896 -46511141 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1370 293 283 10 0 chr6 103005896 103005995 -46511042 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1370 231 360 35 0 chr6 103006025 103006139 -46510898 - Lx8 LINE L1 -201 7272 7155 1 1370 248 0 0 30 chr6 103006526 103006559 -46510478 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1370 432 0 0 0 chr6 103006653 103006701 -46510336 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1370 1101 234 5 0 chr6 103007025 103007243 -46509794 + URR1B DNA MER1_type 7 225 0 1 1370 485 16 16 0 chr6 103007653 103007715 -46509322 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1370 6016 88 23 9 chr6 103007795 103008634 -46508403 - L1_Mus3 LINE L1 -5 6633 5784 1 1370 570 63 0 0 chr6 103009874 103009953 -46507084 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1370 342 195 35 35 chr6 103009961 103009974 -46507063 + ID_B1 SINE B4 140 224 0 2 1370 519 83 0 0 chr6 103009974 103010046 -46506991 + B1_Mur4 SINE Alu 79 150 0 2 1370 603 0 0 0 chr6 103010429 103010496 -46506541 + (TTA)n Simple_repeat Simple_repeat 3 69 0 2 1370 182 37 0 36 chr6 103010641 103010669 -46506368 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 2 1370 340 354 50 0 chr6 103011428 103011589 -46505448 - MLT1E1A LTR MaLR -1 679 511 2 1370 37876 31 0 0 chr6 103012298 103018766 -46498271 - L1Md_T LINE L1 0 6585 61 2 1370 21 57 0 0 chr6 103018901 103018936 -46498101 + AT_rich Low_complexity Low_complexity 1 35 0 2 1370 3193 11 0 0 chr6 103019198 103019562 -46497475 + L1Md_A LINE L1 6218 6581 -1 2 1370 5014 209 68 37 chr6 103020793 103021936 -46495101 - Lx5 LINE L1 -3 7047 5869 2 1370 435 308 86 53 chr6 103021967 103022176 -46494861 + MTEb LTR MaLR 94 309 -70 3 1370 434 34 34 0 chr6 103022176 103022235 -46494802 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 3 1370 250 272 111 0 chr6 103022349 103022430 -46494607 + ORR1E LTR MaLR 20 109 -250 3 1371 207 214 0 0 chr6 103022672 103022714 -46494323 + A-rich Low_complexity Low_complexity 1 42 0 3 1371 342 0 0 0 chr6 103022964 103023002 -46494035 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1371 4565 98 9 8 chr6 103023706 103024371 -46492666 + L1Md_F2 LINE L1 5917 6582 0 3 1371 461 192 148 29 chr6 103024598 103024807 -46492230 - Lx9 LINE L1 -2 7642 7409 3 1371 234 180 60 0 chr6 103024807 103024857 -46492180 + Lx9 LINE L1 7375 7427 -217 3 1371 2053 70 18 4 chr6 103025176 103025449 -46491588 + L1_Mus1 LINE L1 6290 6566 -1 3 1371 3455 112 35 0 chr6 103025731 103026276 -46490761 - L1_Mur2 LINE L1 -1294 4583 4020 3 1371 451 345 70 45 chr6 103026277 103026590 -46490447 - MER2 DNA MER2_type -9 336 16 3 1371 229 295 51 0 chr6 103027717 103027795 -46489242 - L1M5 LINE L1 -519 5605 5524 4 1371 8291 149 20 20 chr6 103028061 103028344 -46488693 - Lx2 LINE L1 -6 6991 6692 4 1371 387 0 0 0 chr6 103028344 103028387 -46488650 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1371 8291 154 18 25 chr6 103028387 103029746 -46487291 - Lx2 LINE L1 -306 6691 5357 4 1371 8370 53 19 1 chr6 103029747 103031136 -46485901 - L1Md_F2 LINE L1 0 6582 5153 4 1371 252 0 0 0 chr6 103031417 103031445 -46485592 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 1371 444 37 0 0 chr6 103032461 103032515 -46484522 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1371 225 293 0 0 chr6 103032814 103032872 -46484165 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1371 304 342 25 67 chr6 103033073 103033192 -46483845 - B4A SINE B4 -177 115 2 4 1371 225 0 0 0 chr6 103033469 103033494 -46483543 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1371 250 359 202 14 chr6 103034383 103034745 -46482292 + MLT1J2 LTR MaLR 4 433 -15 4 1371 634 278 12 36 chr6 103035117 103035285 -46481752 + RSINE1 SINE B4 2 165 0 5 1371 280 336 35 0 chr6 103035301 103035417 -46481620 + MLT1A0 LTR MaLR 72 191 -174 5 1371 278 315 14 14 chr6 103035462 103035536 -46481501 + ID4_ SINE ID 7 80 -3 5 1371 269 354 53 9 chr6 103035536 103035576 -46481461 + B4A SINE B4 7 125 -167 5 1371 273 89 0 0 chr6 103035577 103035622 -46481415 + (A)n Simple_repeat Simple_repeat 1 45 0 5 1371 464 233 0 0 chr6 103035630 103035716 -46481321 + ID_B1 SINE B4 139 224 0 5 1371 661 176 7 7 chr6 103035726 103035869 -46481168 + GA-rich Low_complexity Low_complexity 1 143 0 5 1371 380 295 121 61 chr6 103036101 103036332 -46480705 + MamRep605 Unknown Unknown 385 629 -247 5 1371 23 0 0 0 chr6 103036576 103036599 -46480438 + AT_rich Low_complexity Low_complexity 1 23 0 5 1371 985 289 55 43 chr6 103036700 103037034 -46480003 + ORR1E LTR MaLR 1 379 0 5 1371 268 344 57 66 chr6 103037444 103037769 -46479268 + ORR1E LTR MaLR 51 370 0 6 1371 1824 151 24 62 chr6 103038581 103038920 -46478117 - ORR1A3 LTR MaLR 0 326 1 6 1371 1346 56 0 11 chr6 103039363 103039544 -46477493 + (GAA)n Simple_repeat Simple_repeat 2 180 0 6 1371 887 106 14 0 chr6 103039565 103039706 -46477331 + (GAAA)n Simple_repeat Simple_repeat 3 145 0 6 1371 595 276 134 10 chr6 103039768 103039962 -46477075 - ID_B1 SINE B4 -1 223 6 6 1371 474 65 0 0 chr6 103041057 103041119 -46475918 + (TAG)n Simple_repeat Simple_repeat 1 62 0 6 1371 24 77 0 0 chr6 103041509 103041561 -46475476 + AT_rich Low_complexity Low_complexity 1 52 0 6 1371 1085 332 36 12 chr6 103041573 103042131 -46474906 + Lx9 LINE L1 7054 7624 -20 6 1371 22 56 0 0 chr6 103042131 103042167 -46474870 + AT_rich Low_complexity Low_complexity 1 36 0 6 1371 419 333 22 66 chr6 103042371 103042516 -46474521 - MTEa LTR MaLR -204 175 43 6 1371 3155 32 0 3 chr6 103042516 103042892 -46474145 - L1Md_F2 LINE L1 -2 6580 6206 7 1371 419 333 22 66 chr6 103042892 103042929 -46474108 - MTEa LTR MaLR -337 42 3 6 1371 833 118 96 7 chr6 103043143 103043279 -46473758 + B1_Mus1 SINE Alu 1 148 0 7 1371 270 0 0 0 chr6 103043281 103043311 -46473726 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1371 1133 253 138 30 chr6 103044141 103044475 -46472562 + ORR1D2 LTR MaLR 1 370 0 7 1371 229 156 0 0 chr6 103044599 103044644 -46472393 - Lx8 LINE L1 -29 7444 7400 7 1371 398 344 27 54 chr6 103044713 103044974 -46472063 - Lx7 LINE L1 -400 7296 7043 7 1371 416 330 9 0 chr6 103045234 103045349 -46471688 + RSINE1 SINE B4 11 126 -39 7 1371 329 43 21 0 chr6 103045359 103045406 -46471631 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1371 208 286 16 0 chr6 103045432 103045495 -46471542 + (TA)n Simple_repeat Simple_repeat 2 65 0 7 1371 429 36 0 0 chr6 103045495 103045550 -46471487 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1371 1327 224 186 19 chr6 103045552 103046069 -46470968 + Lx9 LINE L1 7032 7634 -10 8 1371 1141 269 51 37 chr6 103046264 103046615 -46470422 - MTEb LTR MaLR -2 377 22 8 1371 248 192 62 88 chr6 103047041 103047121 -46469916 - MTEb LTR MaLR -15 364 287 8 1371 383 271 104 8 chr6 103047449 103047583 -46469454 - B1F2 SINE Alu -2 147 1 8 1371 516 338 9 74 chr6 103048828 103049045 -46467992 + B3A SINE B2 1 203 -13 8 1371 359 155 0 12 chr6 103049047 103049132 -46467905 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 1371 789 266 24 15 chr6 103049741 103049947 -46467090 - B3 SINE B2 -8 208 1 8 1371 331 21 20 20 chr6 103051066 103051115 -46465922 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 8 1371 232 320 13 26 chr6 103051251 103051328 -46465709 + B4 SINE B4 4 79 -213 8 1371 219 36 0 0 chr6 103051397 103051425 -46465612 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1371 556 269 118 72 chr6 103051465 103051769 -46465268 + RMER20B LTR ERVK 96 413 -214 9 1371 963 347 74 37 chr6 103052148 103052854 -46464183 - Lx8 LINE L1 -4 7469 6738 9 1371 269 271 214 15 chr6 103053089 103053111 -46463926 - RSINE1 SINE B4 -6 159 137 9 1371 243 103 0 0 chr6 103053111 103053150 -46463887 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1371 269 271 214 15 chr6 103053150 103053258 -46463779 - RSINE1 SINE B4 -29 136 4 9 1371 222 91 0 0 chr6 103053797 103053830 -46463207 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 9 1371 220 298 35 0 chr6 103054090 103054147 -46462890 - MIRc SINE MIR -121 147 89 9 1371 407 310 80 0 chr6 103054163 103054276 -46462761 - B1F1 SINE Alu -27 122 1 9 1371 329 249 169 60 chr6 103054354 103054551 -46462486 - B3 SINE B2 -13 203 7 9 1371 1549 213 50 64 chr6 103054777 103055153 -46461884 - ORR1C1 LTR MaLR -7 371 1 9 1371 262 289 78 0 chr6 103055766 103055856 -46461181 + MLT1H LTR MaLR 209 305 -244 9 1371 384 183 55 27 chr6 103056481 103056627 -46460410 + Lx9 LINE L1 7493 7642 -2 1 1371 333 47 0 0 chr6 103056699 103056742 -46460295 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1371 28 0 0 0 chr6 103057090 103057118 -46459919 + AT_rich Low_complexity Low_complexity 1 28 0 1 1371 5933 84 20 43 chr6 103057680 103058588 -46458449 - Lx3_Mus LINE L1 -504 6505 5619 1 1371 3555 91 10 18 chr6 103058590 103059105 -46457932 + Lx3_Mus LINE L1 6499 7009 0 1 1371 735 137 0 0 chr6 103059118 103059242 -46457795 + (GAA)n Simple_repeat Simple_repeat 1 124 0 1 1371 279 377 61 7 chr6 103059260 103059407 -46457630 + MER20 DNA MER1_type 43 197 -22 1 1371 226 231 32 13 chr6 103061938 103062105 -46454932 + (TA)n Simple_repeat Simple_repeat 1 170 0 1 1371 291 195 51 0 chr6 103062265 103062383 -46454654 + (TA)n Simple_repeat Simple_repeat 1 124 0 1 1371 233 206 43 21 chr6 103063141 103063235 -46453802 + (TA)n Simple_repeat Simple_repeat 1 96 0 1 1371 231 88 0 0 chr6 103063263 103063297 -46453740 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1371 195 129 0 0 chr6 103063311 103063342 -46453695 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1 1371 329 278 72 0 chr6 103063410 103063507 -46453530 - B3 SINE B2 -100 116 13 1 1371 1113 82 0 0 chr6 103063507 103063765 -46453272 + (TTC)n Simple_repeat Simple_repeat 1 258 0 1 1371 226 312 43 52 chr6 103063946 103064061 -46452976 + MamGypLTR3 LTR Gypsy 38 151 -688 1 1371 201 39 0 0 chr6 103064670 103064696 -46452341 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1371 3933 117 2 17 chr6 103064824 103065414 -46451623 - MT2B2 LTR ERVL 0 584 4 1 1371 280 53 0 0 chr6 103065417 103065455 -46451582 - MERVL-int LTR ERVL 0 5485 5448 1 1371 299 233 13 40 chr6 103065455 103065531 -46451506 - ORR1A3-int LTR MaLR -1323 640 567 1 1371 252 185 56 0 chr6 103065537 103065591 -46451446 - MERVL_2A-int LTR ERVL -132 5629 5573 1 1371 4644 168 12 3 chr6 103065606 103066370 -46450667 - MERVL_2A-int LTR ERVL -237 5524 4754 1 1371 2407 111 102 8 chr6 103066371 103066742 -46450295 + MTB_Mm LTR MaLR 1 406 -1 1 1371 294 98 0 0 chr6 103067022 103067073 -46449964 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1 1371 1024 168 3 41 chr6 103067200 103067406 -46449631 - ORR1A3 LTR MaLR -15 364 167 1 1371 222 227 0 0 chr6 103067512 103067556 -46449481 + (CAGAGA)n Simple_repeat Simple_repeat 2 45 0 1 1371 396 0 0 0 chr6 103067606 103067650 -46449387 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 1371 510 238 19 28 chr6 103068983 103069091 -46447946 + MLT1A1 LTR MaLR 15 121 -287 1 1371 201 150 0 77 chr6 103069093 103069158 -46447879 + CT-rich Low_complexity Low_complexity 3 62 0 1 1371 349 270 22 103 chr6 103069999 103070135 -46446902 + RSINE1 SINE B4 5 129 -36 1 1371 309 53 0 0 chr6 103070329 103070367 -46446670 + U2 snRNA snRNA 1 38 -150 1 1371 1147 290 74 36 chr6 103070376 103070766 -46446271 + MTD LTR MaLR 1 405 -14 1 1371 3441 207 36 29 chr6 103071019 103071833 -46445204 + Lx2B LINE L1 6134 7039 -19 1 1371 312 313 94 32 chr6 103072017 103072390 -46444647 + L1MEe LINE L1 1143 1538 -4546 1 1371 634 176 18 9 chr6 103072810 103072919 -46444118 + B3 SINE B2 1 110 -106 1 1371 275 96 19 0 chr6 103073160 103073212 -46443825 + (CAAAAA)n Simple_repeat Simple_repeat 5 57 0 1 1371 6725 122 42 15 chr6 103073220 103074321 -46442716 + Lx2 LINE L1 5868 6997 0 1 1371 369 308 41 55 chr6 103074335 103074555 -46442482 - ID_B1 SINE B4 -7 217 1 1 1371 21 0 0 0 chr6 103074561 103074582 -46442455 + AT_rich Low_complexity Low_complexity 1 21 0 1 1371 880 311 102 11 chr6 103074755 103075234 -46441803 - L1MC2 LINE L1 -1665 6538 6020 1 1371 307 359 38 5 chr6 103075283 103075468 -46441569 - L1MD LINE L1 -864 5495 5305 1 1371 305 302 53 12 chr6 103075766 103075937 -46441100 - L1MC2 LINE L1 -1327 5237 5060 1 1371 1378 280 105 28 chr6 103076226 103077248 -46439789 - L1MC2 LINE L1 -3351 3213 2274 1 1371 319 333 76 25 chr6 103077349 103077546 -46439491 - L1MC2 LINE L1 -4670 2081 1875 1 1371 300 349 84 31 chr6 103077710 103077935 -46439102 - L1MC2 LINE L1 -4938 1107 871 1 1371 1800 217 73 28 chr6 103078121 103078547 -46438490 + RMER15 LTR ERVL 26 470 -105 1 1371 312 91 0 0 chr6 103078547 103078591 -46438446 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1371 234 0 0 0 chr6 103078896 103078922 -46438115 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1371 724 323 23 23 chr6 103079047 103079354 -46437683 - RMER5 LTR ERV1 -7 527 221 1 1371 181 118 39 0 chr6 103079446 103079497 -46437540 + (TTATA)n Simple_repeat Simple_repeat 1 53 0 1 1371 5099 124 48 10 chr6 103079501 103080331 -46436706 - Lx3_Mus LINE L1 -9 7000 6139 1 1371 235 364 57 5 chr6 103080633 103080843 -46436194 - L1MC2 LINE L1 -5771 274 54 1 1371 1000 289 58 19 chr6 103080887 103081251 -46435786 + LTR40a LTR ERVL 77 454 -65 1 1371 21 0 0 0 chr6 103081268 103081289 -46435748 + AT_rich Low_complexity Low_complexity 1 21 0 1 1371 1071 65 0 32 chr6 103081421 103081579 -46435458 + L1_Mus1 LINE L1 6413 6565 -2 1 1371 1110 88 0 0 chr6 103081634 103081782 -46435255 + B1_Mus1 SINE Alu 1 148 0 1 1371 312 48 0 0 chr6 103081782 103081824 -46435213 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1371 624 27 0 0 chr6 103081824 103081898 -46435139 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 1 1371 678 225 123 41 chr6 103081925 103082120 -46434917 - B3 SINE B2 -5 211 1 1 1371 432 262 0 0 chr6 103082410 103082700 -46434337 + (TG)n Simple_repeat Simple_repeat 1 290 0 1 1371 1029 87 31 0 chr6 103082729 103082890 -46434147 + L1_Mus3 LINE L1 6473 6638 0 1 1371 591 367 0 6 chr6 103082913 103083094 -46433943 - B3A SINE B2 -18 180 1 1 1371 1916 253 25 35 chr6 103083327 103083810 -46433227 - Lx6 LINE L1 -8 7452 6975 1 1371 739 228 71 22 chr6 103083930 103084114 -46432923 - MTD LTR MaLR -14 405 213 1 1371 1081 118 45 0 chr6 103084147 103084325 -46432712 - L1_Mus3 LINE L1 -1 6637 6452 1 1371 4122 169 49 48 chr6 103084327 103085269 -46431768 + RMER17B LTR ERVK 16 958 0 1 1371 244 91 0 0 chr6 103085284 103085317 -46431720 - HY3 scRNA scRNA -55 46 14 1 1371 3984 108 14 2 chr6 103085317 103085902 -46431135 - L1_Mus3 LINE L1 -194 6444 5853 1 1371 641 311 41 10 chr6 103085909 103086104 -46430933 - MTD LTR MaLR -218 201 1 1 1371 254 29 29 0 chr6 103086109 103086144 -46430893 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 1371 235 279 110 55 chr6 103086146 103086237 -46430800 - B1_Mur3 SINE Alu -47 102 7 1 1371 1140 69 14 0 chr6 103086257 103086402 -46430635 - B1_Mus1 SINE Alu 0 148 2 1 1371 2414 181 11 16 chr6 103087361 103087810 -46429227 - Lx4A LINE L1 0 7058 6612 1 1371 604 68 84 8 chr6 103087813 103087932 -46429105 - L1_Mus3 LINE L1 0 6638 6511 1 1371 2656 128 22 0 chr6 103087932 103088332 -46428705 - Lx4A LINE L1 -454 6604 6196 1 1371 1267 129 51 0 chr6 103088671 103088888 -46428149 - Lx4A LINE L1 -1021 6037 5810 1 1371 866 124 4 251 chr6 103088894 103089070 -46427967 + L1_Mur2 LINE L1 5086 5194 -683 1 1371 351 0 0 0 chr6 103089070 103089109 -46427928 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1371 866 124 4 251 chr6 103089109 103089211 -46427826 + L1_Mur2 LINE L1 5195 5295 -582 1 1371 1040 41 6 140 chr6 103089211 103089382 -46427655 + B1_Mus1 SINE Alu 1 148 0 1 1371 242 109 0 35 chr6 103089382 103089439 -46427598 + (CAAAAA)n Simple_repeat Simple_repeat 6 60 0 1 1371 395 306 28 9 chr6 103089576 103089685 -46427352 - RSINE1 SINE B4 -19 146 36 1 1371 198 103 0 0 chr6 103089707 103089736 -46427301 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 1 1371 207 100 0 0 chr6 103089797 103089827 -46427210 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 1 1371 410 267 83 41 chr6 103089828 103089949 -46427088 - B1F1 SINE Alu -10 139 14 1 1371 2862 24 0 0 chr6 103090154 103090495 -46426542 + ORR1A0 LTR MaLR 6 346 0 1 1371 213 281 24 35 chr6 103090578 103090663 -46426374 + CT-rich Low_complexity Low_complexity 4 87 0 1 1371 241 309 20 20 chr6 103091295 103091394 -46425643 - MTEb LTR MaLR 0 379 281 1 1371 460 369 44 75 chr6 103092277 103092570 -46424467 - B4 SINE B4 0 292 9 1 1371 287 91 36 0 chr6 103092577 103092632 -46424405 + (TTTTTG)n Simple_repeat Simple_repeat 3 59 0 1 1371 267 279 31 57 chr6 103092711 103092826 -46424211 - MLT1E3 LTR MaLR -8 619 509 1 1371 1443 45 0 0 chr6 103092959 103093227 -46423810 + (TTC)n Simple_repeat Simple_repeat 1 268 0 1 1371 1009 112 0 0 chr6 103093227 103093361 -46423676 - B1_Mm SINE Alu -12 135 2 1 1371 575 297 221 17 chr6 103093414 103093970 -46423067 - L1MB1 LINE L1 -44 6145 5477 1 1371 279 311 76 23 chr6 103094053 103094356 -46422681 - L1MB1 LINE L1 -1391 4749 4431 1 1371 631 229 7 58 chr6 103094359 103094498 -46422539 + MT2A LTR ERVL 1 132 -401 1 1371 542 297 17 46 chr6 103094492 103094665 -46422372 + MT2A LTR ERVL 92 259 -274 1 1371 351 0 0 0 chr6 103094679 103094718 -46422319 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1371 180 97 0 0 chr6 103094730 103094761 -46422276 + (TTTTTA)n Simple_repeat Simple_repeat 2 32 0 1 1371 462 18 0 0 chr6 103094867 103094922 -46422115 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1371 400 254 85 4 chr6 103094936 103095052 -46421985 - B3A SINE B2 -70 125 1 1 1371 906 286 87 27 chr6 103095086 103095647 -46421390 - L1MB1 LINE L1 -1866 4274 3680 1 1371 700 275 67 4 chr6 103095650 103095973 -46421064 - ORR1D1 LTR MaLR 0 370 1 1 1371 870 133 0 0 chr6 103096005 103096155 -46420882 + (TCTCCC)n Simple_repeat Simple_repeat 1 150 0 1 1371 423 0 0 0 chr6 103096160 103096207 -46420830 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1371 3237 124 30 2 chr6 103096300 103096799 -46420238 + Lx3_Mus LINE L1 6497 7009 0 1 1371 227 164 0 35 chr6 103096803 103096860 -46420177 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1 1371 393 308 0 7 chr6 103096868 103097012 -46420025 - L1MB1 LINE L1 -2475 3665 3523 1 1371 1518 169 28 32 chr6 103097012 103097294 -46419743 - ORR1B2 LTR MaLR 0 367 87 1 1371 2232 211 42 20 chr6 103097294 103097792 -46419245 + Lx4B LINE L1 6546 7054 -4 1 1371 802 66 16 8 chr6 103098122 103098244 -46418793 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 1 1371 22 0 0 0 chr6 103098248 103098270 -46418767 + AT_rich Low_complexity Low_complexity 1 22 0 1 1371 1655 50 5 27 chr6 103098270 103098494 -46418543 - L1Md_F2 LINE L1 -3 6579 6361 1 1371 1054 95 0 0 chr6 103098494 103098631 -46418406 - B1_Mus2 SINE Alu -10 137 1 1 1371 294 95 0 0 chr6 103098711 103098753 -46418284 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 1 1371 2198 119 41 28 chr6 103098806 103099169 -46417868 - Lx2 LINE L1 -19 6978 6611 1 1371 3205 36 0 0 chr6 103099169 103099558 -46417479 + MTA_Mm LTR MaLR 1 389 -7 1 1371 8244 60 17 3 chr6 103099559 103100642 -46416395 + MTA_Mm-int LTR MaLR 1 1098 0 1 1371 3395 38 0 0 chr6 103100642 103101038 -46415999 + MTA_Mm LTR MaLR 1 396 0 1 1371 845 230 0 0 chr6 103101038 103101199 -46415838 - Lx2 LINE L1 -382 6615 6455 1 1371 509 351 0 0 chr6 103103523 103103654 -46413383 + RSINE1 SINE B4 27 157 -8 1 1371 22 35 0 0 chr6 103103672 103103701 -46413336 + AT_rich Low_complexity Low_complexity 1 29 0 1 1371 201 74 0 0 chr6 103104086 103104113 -46412924 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1371 3327 144 120 3 chr6 103104114 103104707 -46412330 - Lx2 LINE L1 -6 6991 6330 2 1371 330 349 35 46 chr6 103104814 103104988 -46412049 + B3 SINE B2 3 174 -42 2 1371 257 288 44 18 chr6 103105000 103105113 -46411924 + (CAGAGA)n Simple_repeat Simple_repeat 4 119 0 2 1371 212 310 11 11 chr6 103105115 103105203 -46411834 + (CCCCAG)n Simple_repeat Simple_repeat 3 90 0 2 1371 322 276 104 42 chr6 103105368 103105580 -46411457 + LTR50 LTR ERVL 31 255 -540 2 1371 1035 263 137 116 chr6 103106177 103106552 -46410485 - MT2A LTR ERVL -41 492 73 2 1371 849 84 0 0 chr6 103106552 103106671 -46410366 + (GGA)n Simple_repeat Simple_repeat 3 121 0 2 1371 4784 128 139 63 chr6 103106676 103107626 -46409411 - RLTR13D2 LTR ERVK 0 1023 2 2 1371 1035 263 137 116 chr6 103107626 103107726 -46409311 - MT2A LTR ERVL -461 72 1 2 1371 458 202 11 11 chr6 103107726 103107818 -46409219 + MTD LTR MaLR 320 411 -8 2 1371 317 344 68 21 chr6 103108729 103108919 -46408118 - ORR1E LTR MaLR -15 344 146 2 1371 204 300 50 0 chr6 103109812 103109872 -46407165 - L2b LINE L2 -10 3365 3303 2 1371 867 53 18 0 chr6 103110301 103110415 -46406622 - B1_Mus2 SINE Alu -9 138 23 2 1371 267 333 9 28 chr6 103110652 103110760 -46406277 - MER58B DNA MER1_type -110 231 126 2 1371 276 324 81 36 chr6 103110801 103111069 -46405968 + MLT1A LTR MaLR 7 365 -25 2 1371 495 175 0 0 chr6 103111288 103111408 -46405629 + GA-rich Low_complexity Low_complexity 2 121 0 2 1371 406 331 88 22 chr6 103113699 103113971 -46403066 - B4A SINE B4 0 292 3 2 1371 1197 58 0 0 chr6 103114177 103114331 -46402706 + (TTTTC)n Simple_repeat Simple_repeat 2 155 0 2 1371 268 319 54 54 chr6 103115297 103115446 -46401591 - B1F1 SINE Alu 0 149 1 2 1371 538 323 8 0 chr6 103115532 103115665 -46401372 + ID_B1 SINE B4 89 222 -2 2 1371 293 321 0 13 chr6 103116037 103116116 -46400921 + L2a LINE L2 3295 3372 -54 2 1371 993 248 28 17 chr6 103117168 103117455 -46399582 + Lx7 LINE L1 7142 7431 -265 2 1371 384 251 40 37 chr6 103117436 103117643 -46399394 + Lx7 LINE L1 7579 7696 0 2 1371 468 51 0 0 chr6 103118147 103118206 -46398831 + (TTCTC)n Simple_repeat Simple_repeat 1 59 0 2 1371 1476 177 8 130 chr6 103118207 103118577 -46398460 - Lx4A LINE L1 -4 7054 6730 2 1371 27 0 0 0 chr6 103118580 103118607 -46398430 + AT_rich Low_complexity Low_complexity 1 27 0 2 1371 2601 140 7 11 chr6 103118655 103119110 -46397927 + Lx2 LINE L1 6543 6995 -2 2 1371 625 309 0 0 chr6 103119827 103119976 -46397061 + RSINE1 SINE B4 1 149 -16 2 1371 297 0 0 0 chr6 103119981 103120014 -46397023 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1371 21 0 0 0 chr6 103120436 103120457 -46396580 + AT_rich Low_complexity Low_complexity 1 21 0 2 1371 567 273 72 41 chr6 103123133 103123282 -46393755 + B3 SINE B2 16 157 -59 2 1371 2822 51 14 0 chr6 103123282 103123634 -46393403 + L1_Mus1 LINE L1 6210 6566 -1 2 1371 567 273 72 41 chr6 103123634 103123679 -46393358 + B3 SINE B2 158 215 -1 2 1371 362 384 58 46 chr6 103124375 103124807 -46392230 - L2 LINE L2 -1870 1549 1113 2 1371 504 248 9 0 chr6 103124823 103124932 -46392105 + PB1D7 SINE Alu 10 119 -1 2 1371 576 53 0 0 chr6 103127484 103127560 -46389477 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 2 1371 453 311 59 33 chr6 103127598 103127625 -46389412 - RSINE1 SINE B4 0 165 143 2 1371 423 38 0 0 chr6 103127625 103127678 -46389359 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1371 453 311 59 33 chr6 103127678 103127803 -46389234 - RSINE1 SINE B4 -23 142 9 2 1371 425 211 0 167 chr6 103128099 103128213 -46388824 + B1_Mur2 SINE Alu 20 114 -35 2 1371 225 0 0 0 chr6 103128221 103128246 -46388791 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 2 1371 1150 253 26 26 chr6 103128359 103128663 -46388374 - Lx2B LINE L1 -4 6996 6693 2 1371 5668 241 82 40 chr6 103129098 103129622 -46387415 - Lx6 LINE L1 -2 7458 6931 2 1371 180 0 0 0 chr6 103129622 103129642 -46387395 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2 1371 5668 241 82 40 chr6 103129642 103129773 -46387264 - Lx6 LINE L1 -530 6930 6768 2 1371 546 16 0 0 chr6 103129773 103129836 -46387201 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 2 1371 5668 241 82 40 chr6 103129836 103129883 -46387154 - Lx6 LINE L1 -693 6767 6727 2 1371 663 13 0 0 chr6 103129883 103129959 -46387078 + (TG)n Simple_repeat Simple_repeat 2 77 0 2 1371 5668 241 82 40 chr6 103129959 103130835 -46386202 - Lx6 LINE L1 -734 6726 5812 2 1371 6166 201 27 34 chr6 103130829 103131511 -46385526 - Lx6 LINE L1 -170 5710 5041 2 1371 1869 128 69 0 chr6 103131511 103131817 -46385220 - ORR1A2 LTR MaLR 0 327 1 2 1371 6166 201 27 34 chr6 103131817 103132036 -46385001 - Lx6 LINE L1 -840 5040 4814 2 1371 3711 115 13 66 chr6 103132036 103132661 -46384376 - Lx2 LINE L1 0 6997 6406 2 1371 6166 201 27 34 chr6 103132661 103133248 -46383789 - Lx6 LINE L1 -1067 4813 4232 2 1371 780 173 0 0 chr6 103133270 103133409 -46383628 - Lx6 LINE L1 -1796 4084 3946 2 1371 1611 313 62 16 chr6 103133434 103134459 -46382578 - L1_Mur3 LINE L1 -7046 666 1 2 1371 908 145 0 6 chr6 103135230 103135390 -46381647 + GA-rich Low_complexity Low_complexity 2 160 0 2 1371 210 179 26 0 chr6 103135823 103135862 -46381175 + B4A SINE B4 44 83 -209 2 1371 1238 110 28 9 chr6 103135862 103136073 -46380964 + L1_Mus4 LINE L1 6417 6631 -5 2 1371 321 308 13 0 chr6 103136086 103136164 -46380873 + RSINE1 SINE B4 54 132 -33 2 1371 198 0 0 0 chr6 103136207 103136229 -46380808 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1371 423 0 0 0 chr6 103136663 103136710 -46380327 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1371 240 348 85 18 chr6 103137399 103137563 -46379474 + MIR SINE MIR 14 188 -74 2 1371 348 200 39 61 chr6 103137638 103137819 -46379218 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 2 1371 592 67 22 0 chr6 103138033 103138123 -46378914 + (TCTA)n Simple_repeat Simple_repeat 1 92 0 2 1371 28 48 0 0 chr6 103138246 103138288 -46378749 + AT_rich Low_complexity Low_complexity 1 42 0 2 1371 342 358 37 0 chr6 103138548 103138657 -46378380 + PB1D10 SINE Alu 3 115 -2 2 1371 597 320 89 36 chr6 103139808 103140145 -46376892 + LTR55 LTR ERV 19 373 -175 2 1371 806 218 182 18 chr6 103140195 103140415 -46376622 - MTC LTR MaLR 0 421 166 2 1371 3532 119 4 0 chr6 103140420 103140933 -46376104 + MT2B2 LTR ERVL 70 584 0 2 1371 2257 113 3 3 chr6 103141158 103141485 -46375552 - ORR1A2 LTR MaLR 0 327 1 2 1371 305 367 81 27 chr6 103141601 103141786 -46375251 - B3A SINE B2 -2 196 2 2 1371 401 333 22 15 chr6 103143074 103143211 -46373826 + ORR1E LTR MaLR 3 140 -219 2 1371 825 108 0 114 chr6 103143256 103143423 -46373614 - L1Md_F2 LINE L1 0 6582 6435 2 1371 473 83 0 0 chr6 103143423 103143483 -46373554 + MusHAL1 LINE L1 541 600 -2112 2 1371 257 306 52 133 chr6 103143503 103143549 -46373488 + ORR1E LTR MaLR 166 214 -145 2 1371 216 0 0 0 chr6 103143549 103143573 -46373464 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 2 1371 257 306 52 133 chr6 103143573 103143737 -46373300 + ORR1E LTR MaLR 215 359 0 2 1371 554 306 54 23 chr6 103143807 103144028 -46373009 + B4A SINE B4 47 274 -18 2 1371 307 369 82 19 chr6 103144505 103144762 -46372275 + Cheshire DNA MER1_type 1 273 -2147 2 1371 996 244 0 0 chr6 103145107 103145332 -46371705 - URR1A DNA MER1_type 0 226 2 2 1371 458 354 25 0 chr6 103145992 103146150 -46370887 + B3A SINE B2 1 162 -36 2 1371 182 160 20 0 chr6 103146160 103146210 -46370827 + CT-rich Low_complexity Low_complexity 2 52 0 2 1371 552 30 0 0 chr6 103146557 103146623 -46370414 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 1371 32 0 0 0 chr6 103147287 103147319 -46369718 + AT_rich Low_complexity Low_complexity 1 32 0 2 1371 268 342 19 19 chr6 103147832 103147987 -46369050 + GA-rich Low_complexity Low_complexity 5 159 0 2 1371 465 84 0 0 chr6 103148741 103148812 -46368225 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1371 202 132 26 0 chr6 103148873 103148911 -46368126 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1371 213 39 0 0 chr6 103148915 103148941 -46368096 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1371 330 129 0 0 chr6 103149718 103149780 -46367257 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1371 858 297 108 61 chr6 103150722 103151084 -46365953 - MTE2b LTR MaLR 0 379 1 2 1371 24 0 0 0 chr6 103151970 103151994 -46365043 + AT_rich Low_complexity Low_complexity 1 24 0 2 1371 207 0 0 0 chr6 103152275 103152298 -46364739 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 2 1371 6249 134 37 28 chr6 103152831 103152847 -46364190 - Lx3A LINE L1 -1 6980 6967 2 1371 207 0 0 0 chr6 103152847 103152870 -46364167 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2 171 6249 134 37 28 chr6 103152870 103153966 -46363071 - Lx3A LINE L1 -15 6966 5858 2 1372 4083 90 44 18 chr6 103153967 103154577 -46362460 + Lx3A LINE L1 5213 5838 -48 2 1372 348 296 154 26 chr6 103155791 103156096 -46360941 - L1ME3 LINE L1 -151 6011 5668 2 1372 295 292 9 0 chr6 103156419 103156532 -46360505 + L1MA9 LINE L1 6174 6287 -25 2 1372 552 275 106 131 chr6 103156564 103156756 -46360281 + Lx8 LINE L1 7039 7181 -292 2 1372 4176 72 14 17 chr6 103156756 103157337 -46359700 - L1_Mus3 LINE L1 -6 6632 6054 2 1372 552 275 106 131 chr6 103157337 103157533 -46359504 + Lx8 LINE L1 7182 7399 -74 2 1372 471 48 0 0 chr6 103157533 103157595 -46359442 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1372 552 275 106 131 chr6 103157595 103157649 -46359388 + Lx8 LINE L1 7400 7470 -3 2 1372 23 78 0 0 chr6 103157721 103157772 -46359265 + AT_rich Low_complexity Low_complexity 1 51 0 2 1372 523 282 75 25 chr6 103157781 103157981 -46359056 + B3 SINE B2 2 211 -5 2 1372 348 240 60 111 chr6 103159729 103159846 -46357191 + PB1D10 SINE Alu 7 117 0 2 1372 750 260 18 45 chr6 103160423 103160650 -46356387 + B3A SINE B2 7 213 -3 2 1372 237 307 0 13 chr6 103160659 103160735 -46356302 + GA-rich Low_complexity Low_complexity 3 77 0 2 1372 298 339 98 53 chr6 103160735 103160981 -46356056 + L2 LINE L2 2810 3066 -353 2 1372 3042 45 16 0 chr6 103161628 103162010 -46355027 + RLTR10 LTR ERVK 1 388 -2 2 1372 701 302 52 72 chr6 103162185 103162357 -46354680 + B3A SINE B2 2 169 -26 2 1372 339 25 0 0 chr6 103162357 103162397 -46354640 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1372 425 302 52 72 chr6 103162397 103162417 -46354620 + B2_Mm2 SINE B2 170 189 -6 2 1372 353 396 52 38 chr6 103162544 103162754 -46354283 - LTR33 LTR ERVL -300 215 3 2 1372 458 308 182 8 chr6 103164373 103164625 -46352412 - RMER15 LTR ERVL 0 575 280 2 1372 1046 110 0 0 chr6 103164926 103165072 -46351965 + B1_Mus1 SINE Alu 2 147 -1 2 1372 3166 38 27 7 chr6 103165378 103165781 -46351256 + IAPLTR2a LTR ERVK 1 411 0 3 1372 3544 75 16 31 chr6 103165782 103166599 -46350438 + IAPEz-int LTR ERVK 9 662 -5819 3 1372 2195 68 0 0 chr6 103166599 103166877 -46350160 + IAPEz-int LTR ERVK 1359 1636 -4845 3 1372 5739 53 15 14 chr6 103166876 103167619 -46349418 + IAPEz-int LTR ERVK 5736 6479 -2 3 1372 3128 33 32 8 chr6 103167621 103168022 -46349015 + IAPLTR2a LTR ERVK 1 411 0 3 1372 272 267 48 40 chr6 103168468 103168593 -46348444 - L1M5 LINE L1 -1560 4586 4461 3 1372 255 273 182 0 chr6 103169185 103169262 -46347775 - RSINE1 SINE B4 -69 96 6 3 1372 31 44 0 0 chr6 103169366 103169411 -46347626 + AT_rich Low_complexity Low_complexity 1 45 0 3 1372 675 301 153 27 chr6 103169627 103169940 -46347097 + MTD LTR MaLR 6 406 -13 3 1372 395 191 0 0 chr6 103171373 103171441 -46345596 + ID4 SINE ID 3 70 -13 3 1372 2098 237 25 19 chr6 103172821 103173341 -46343696 - RMER17B LTR ERVK -4 954 432 3 1372 603 0 0 0 chr6 103173341 103173408 -46343629 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1372 227 338 76 21 chr6 103173767 103173912 -46343125 + YREP_Mm Unknown Unknown 156 308 -1504 3 1372 358 284 16 114 chr6 103173796 103173919 -46343118 - PB1D9 SINE Alu -9 111 1 3 1372 568 306 21 36 chr6 103174142 103174335 -46342702 + LTR41 LTR ERVL 20 209 -559 3 1372 235 267 60 128 chr6 103174520 103174653 -46342384 + LTR41 LTR ERVL 490 613 -155 3 1372 475 315 58 10 chr6 103175956 103176161 -46340876 + L1M5 LINE L1 5522 5736 -443 3 1372 384 22 0 0 chr6 103176503 103176548 -46340489 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1372 334 335 77 47 chr6 103176601 103177012 -46340025 + MLT2B4 LTR ERVL 1 466 -54 3 1372 414 190 17 8 chr6 103177037 103177154 -46339883 + (TA)n Simple_repeat Simple_repeat 1 118 0 3 1372 2990 23 0 3 chr6 103177627 103177974 -46339063 + ORR1A0 LTR MaLR 1 346 0 3 1372 5399 70 15 2 chr6 103177974 103179359 -46337678 + ORR1A0-int LTR MaLR 1 1792 0 3 1372 3014 26 0 0 chr6 103179359 103179705 -46337332 + ORR1A0 LTR MaLR 1 346 0 3 1372 252 0 0 0 chr6 103180296 103180324 -46336713 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1372 390 21 0 0 chr6 103180324 103180370 -46336667 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1372 4054 41 0 0 chr6 103180745 103181235 -46335802 + L1Md_F2 LINE L1 6093 6582 0 3 1372 21 0 0 0 chr6 103181302 103181323 -46335714 + AT_rich Low_complexity Low_complexity 1 21 0 3 1372 2699 222 50 0 chr6 103182432 103183050 -46333987 - Lx9 LINE L1 -7 7637 6989 3 1372 1949 179 73 0 chr6 103184008 103184365 -46332672 + ORR1B1 LTR MaLR 1 383 -11 3 1372 207 0 0 0 chr6 103184809 103184832 -46332205 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1372 2372 246 62 67 chr6 103185166 103185888 -46331149 - Lx6 LINE L1 -1129 6331 5613 3 1372 2853 171 23 3 chr6 103185892 103186460 -46330577 - L1_Mur3 LINE L1 -1260 4620 4042 3 1372 2006 230 42 23 chr6 103186468 103186989 -46330048 + Lx6 LINE L1 6356 6886 -574 3 1372 327 295 34 43 chr6 103187270 103187387 -46329650 + RLTR33 LTR ERVK 516 631 -47 3 1372 1720 266 20 66 chr6 103187438 103187712 -46329325 + Lx6 LINE L1 6912 7172 -288 3 1372 1247 55 0 0 chr6 103187712 103187875 -46329162 + L1_Mus2 LINE L1 6404 6566 0 3 1372 1720 266 20 66 chr6 103187875 103188160 -46328877 + Lx6 LINE L1 7173 7445 -15 3 1372 568 281 0 7 chr6 103188186 103188326 -46328711 - B1_Mur3 SINE Alu -6 143 5 3 1372 347 209 9 0 chr6 103189211 103189326 -46327711 + (TA)n Simple_repeat Simple_repeat 2 117 0 3 1372 1045 62 0 7 chr6 103189440 103189587 -46327450 - L1_Mus1 LINE L1 0 6567 6422 3 1372 403 316 84 19 chr6 103189594 103189855 -46327182 - L1MDa LINE L1 -881 5656 5379 3 1372 340 275 154 43 chr6 103189896 103190151 -46326886 - L1MDa LINE L1 -1238 5299 5021 3 1372 1893 35 4 0 chr6 103190151 103190381 -46326656 - L1Md_A LINE L1 -1 6581 6351 3 1372 340 275 154 43 chr6 103190381 103190540 -46326497 - L1MDa LINE L1 -1517 5020 4840 3 1372 357 345 98 20 chr6 103190580 103190834 -46326203 - L1MDa LINE L1 -1773 4764 4491 3 1372 223 26 50 25 chr6 103190916 103190956 -46326081 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 3 1372 599 266 21 14 chr6 103191288 103191429 -46325608 - B1_Mur2 SINE Alu -1 148 7 3 1372 237 183 0 77 chr6 103191444 103191509 -46325528 - L1M3 LINE L1 -2194 3946 3887 3 1372 826 327 84 39 chr6 103191776 103192896 -46324141 - L1MDa LINE L1 -4601 2032 856 3 1372 1880 229 123 83 chr6 103192906 103193716 -46323321 - RMER6C LTR ERVK -56 700 4 3 1372 227 256 62 104 chr6 103194299 103194355 -46322682 + B3 SINE B2 1 52 -164 3 1372 1657 196 96 64 chr6 103194355 103194792 -46322245 + RMER6C LTR ERVK 1 451 -239 3 1372 703 59 16 48 chr6 103194848 103194973 -46322064 - L1_Mus3 LINE L1 -7 6631 6511 3 1372 1856 210 96 29 chr6 103195278 103195724 -46321313 + RLTR19 LTR ERVK 24 499 0 3 1372 2216 196 0 30 chr6 103195749 103196181 -46320856 - MTC LTR MaLR -2 419 1 3 1372 2361 182 54 94 chr6 103196707 103197134 -46319903 + RMER4B LTR ERVK 17 442 -143 3 1372 225 94 0 0 chr6 103197134 103197166 -46319871 + (CTTAT)n Simple_repeat Simple_repeat 3 34 0 3 1372 2361 182 54 94 chr6 103197166 103197232 -46319805 + RMER4B LTR ERVK 443 491 -94 3 1372 225 94 0 0 chr6 103197232 103197264 -46319773 + (CTTAT)n Simple_repeat Simple_repeat 3 34 0 3 1372 2361 182 54 94 chr6 103197264 103197362 -46319675 + RMER4B LTR ERVK 492 585 0 3 1372 965 290 120 0 chr6 103197447 103197781 -46319256 - MTD LTR MaLR -25 394 21 3 1372 422 323 55 76 chr6 103197882 103198157 -46318880 + RMER15 LTR ERVL 293 561 -14 3 1372 243 301 0 46 chr6 103198350 103198437 -46318600 - ORR1A2 LTR MaLR -15 404 322 3 1372 26273 16 2 9 chr6 103198437 103202372 -46314665 + L1Md_A LINE L1 385 4285 -1598 3 1372 422 136 694 22 chr6 103202372 103202493 -46314544 - ORR1A2 LTR MaLR -124 203 2 3 1372 1363 234 24 0 chr6 103202587 103202882 -46314155 + RLTR18B LTR ERVK 202 503 -9 3 1372 4038 177 34 26 chr6 103203267 103204205 -46312832 + L1_Mur3 LINE L1 2681 3626 -2254 3 1372 228 178 110 0 chr6 103204261 103204334 -46312703 + L1_Mur3 LINE L1 3624 3704 -2176 3 1372 31 0 0 0 chr6 103204336 103204367 -46312670 + AT_rich Low_complexity Low_complexity 1 31 0 3 1372 2272 189 73 35 chr6 103204778 103204806 -46312231 + L1_Mur3 LINE L1 3696 3722 -2158 3 1372 1410 78 0 0 chr6 103204806 103204998 -46312039 + L1_Mus1 LINE L1 6376 6567 0 3 1372 2272 189 73 35 chr6 103204998 103205598 -46311439 + L1_Mur3 LINE L1 3723 4348 -1532 3 1372 1155 15 0 0 chr6 103205654 103205787 -46311250 + (TATATG)n Simple_repeat Simple_repeat 4 136 0 3 1372 819 196 40 11 chr6 103205905 103206080 -46310957 + Lx7 LINE L1 6367 6546 -1150 3 1372 615 210 0 53 chr6 103206080 103206096 -46310941 + Lx7 LINE L1 6673 6688 -1008 3 1372 1924 185 40 0 chr6 103206096 103206447 -46310590 + ORR1B2 LTR MaLR 1 365 -2 3 1372 615 210 0 53 chr6 103206447 103206561 -46310476 + Lx7 LINE L1 6689 6796 -900 3 1372 1769 211 8 55 chr6 103206562 103206959 -46310078 + ORR1C1 LTR MaLR 1 378 0 3 1372 4848 205 160 30 chr6 103206960 103207227 -46309810 + ORR1C1-int LTR MaLR 2 284 -1225 3 1372 243 61 0 0 chr6 103207227 103207260 -46309777 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1372 4848 205 160 30 chr6 103207260 103207746 -46309291 + ORR1C1-int LTR MaLR 285 912 -597 3 1372 1553 191 129 14 chr6 103207746 103208096 -46308941 + ORR1B1 LTR MaLR 5 394 0 3 1372 4848 205 160 30 chr6 103208096 103208500 -46308537 + ORR1C1-int LTR MaLR 913 1325 -184 3 1372 189 0 0 0 chr6 103208500 103208521 -46308516 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1372 4848 224 119 33 chr6 103208521 103208713 -46308324 + ORR1C1-int LTR MaLR 1326 1466 -43 3 1372 351 347 114 7 chr6 103208822 103209095 -46307942 - L1MC4a LINE L1 -1221 6661 6360 3 1372 215 179 14 43 chr6 103209243 103209313 -46307724 + A-rich Low_complexity Low_complexity 5 72 0 3 1372 246 262 33 0 chr6 103209612 103209673 -46307364 + ID_B1 SINE B4 159 221 -3 3 1372 247 167 11 43 chr6 103209683 103209777 -46307260 + GA-rich Low_complexity Low_complexity 1 91 0 3 1372 245 174 22 0 chr6 103210745 103210791 -46306246 - PB1 SINE Alu -2 125 79 3 1372 233 378 0 43 chr6 103211891 103211985 -46305052 + PB1D10 SINE Alu 1 90 -27 3 1372 447 19 0 0 chr6 103212653 103212705 -46304332 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1372 4282 40 17 4 chr6 103213022 103213546 -46303491 + L1Md_F2 LINE L1 6048 6578 -4 3 1372 3749 238 64 1 chr6 103213610 103214550 -46302487 + Lx9 LINE L1 6641 7639 -5 3 1372 1604 305 22 4 chr6 103215072 103215575 -46301462 + Lx9 LINE L1 6537 7048 -596 3 1372 380 20 0 20 chr6 103215665 103215715 -46301322 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1372 285 98 0 0 chr6 103215715 103215755 -46301282 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1372 264 30 0 0 chr6 103215889 103215922 -46301115 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1372 454 277 138 0 chr6 103215929 103216059 -46300978 - B1F SINE Alu 0 149 2 3 1372 259 341 30 45 chr6 103216341 103216473 -46300564 + MER94 DNA AcHobo 4 133 -1 3 1372 1334 185 91 56 chr6 103216532 103216852 -46300185 + RMER19B LTR ERVK 310 640 -262 3 1372 2138 71 3 0 chr6 103216852 103217134 -46299903 + Lx LINE L1 5621 5903 -751 3 1372 580 302 52 24 chr6 103217160 103217408 -46299629 - Lx8 LINE L1 -2 7471 7217 3 1372 190 357 24 0 chr6 103217580 103217664 -46299373 + L2b LINE L2 3284 3369 -6 3 1372 180 111 0 0 chr6 103218677 103218704 -46298333 + (TGG)n Simple_repeat Simple_repeat 1 27 0 3 1372 525 331 33 85 chr6 103219944 103220251 -46296786 - B4A SINE B4 -1 291 1 3 1372 186 71 0 0 chr6 103220896 103220924 -46296113 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1372 1109 75 7 0 chr6 103220924 103221071 -46295966 - B1_Mus1 SINE Alu 0 148 1 3 1372 2506 135 14 12 chr6 103221795 103222216 -46294821 + Lx4A LINE L1 6634 7055 -3 3 1372 323 272 48 88 chr6 103222315 103222440 -46294597 + PB1D7 SINE Alu 1 120 0 3 1372 207 0 0 0 chr6 103222771 103222794 -46294243 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 3 1372 222 214 0 0 chr6 103223097 103223139 -46293898 + GA-rich Low_complexity Low_complexity 2 43 0 3 1372 241 336 70 66 chr6 103224090 103224348 -46292689 - L2 LINE L2 -2054 1365 1107 3 1372 579 53 0 0 chr6 103225805 103225880 -46291157 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1372 212 190 9 91 chr6 103226088 103226198 -46290839 + (TATAA)n Simple_repeat Simple_repeat 5 105 0 3 1372 1158 48 7 7 chr6 103226696 103226842 -46290195 + B1_Mm SINE Alu 1 146 -1 3 1372 306 67 0 0 chr6 103226843 103226888 -46290149 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 3 1372 237 293 124 35 chr6 103227009 103227154 -46289883 - RMER15 LTR ERVL -116 459 302 3 1372 1496 254 39 78 chr6 103228483 103228945 -46288092 - RLTR28B LTR ERVL 0 481 38 3 1372 481 291 151 16 chr6 103229098 103229283 -46287754 + B3A SINE B2 3 212 -4 3 1372 504 0 0 0 chr6 103229293 103229349 -46287688 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 3 1372 1153 75 0 0 chr6 103229353 103229500 -46287537 - B1_Mus2 SINE Alu 0 147 1 3 1372 2169 99 12 3 chr6 103229983 103230318 -46286719 - Lx3B LINE L1 -712 6261 5924 3 1372 1793 117 4 4 chr6 103230318 103230592 -46286445 + Lx LINE L1 6381 6654 0 3 1372 342 0 0 0 chr6 103230724 103230762 -46286275 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1372 313 365 71 8 chr6 103230868 103231122 -46285915 - B4A SINE B4 -18 274 5 4 1372 318 347 77 52 chr6 103232728 103233140 -46283897 - MLT1B LTR MaLR -5 462 27 4 1372 342 0 0 0 chr6 103233255 103233293 -46283744 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1372 1137 58 0 0 chr6 103233293 103233430 -46283607 - B1_Mus2 SINE Alu -10 137 1 4 1372 233 279 44 0 chr6 103234572 103234632 -46282405 + MTEa LTR MaLR 304 366 -13 4 1372 814 356 70 48 chr6 103234632 103235149 -46281888 + MTEa-int LTR MaLR 1 528 -1052 4 1372 225 261 56 28 chr6 103235308 103235379 -46281658 - RMER15 LTR ERVL -2 573 501 4 1372 2921 41 96 0 chr6 103235379 103235916 -46281121 - L1Md_F2 LINE L1 -623 5959 5302 4 1372 4581 70 14 42 chr6 103235924 103236583 -46280454 + L1Md_F2 LINE L1 5943 6582 0 4 1372 972 229 178 20 chr6 103236583 103236877 -46280160 - RMER15 LTR ERVL -68 507 163 4 1372 200 59 0 29 chr6 103236887 103236922 -46280115 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 4 1372 619 251 25 60 chr6 103236936 103237135 -46279902 - RMER15 LTR ERVL -366 209 18 4 1372 705 24 0 0 chr6 103237258 103237341 -46279696 + (GTTTG)n Simple_repeat Simple_repeat 2 84 0 4 1372 246 333 16 126 chr6 103238490 103238617 -46278420 + PB1D7 SINE Alu 3 115 -5 4 1372 439 270 71 0 chr6 103238850 103238976 -46278061 + B1F SINE Alu 5 139 -10 4 1372 993 149 0 19 chr6 103241229 103241543 -46275494 + (TG)n Simple_repeat Simple_repeat 1 308 0 4 1372 576 313 43 32 chr6 103242138 103242326 -46274711 - B3A SINE B2 -1 197 8 4 1372 479 340 104 60 chr6 103242509 103243009 -46274028 - L1MEg LINE L1 -4309 1775 1254 4 1372 528 248 9 9 chr6 103243017 103243127 -46273910 - PB1D10 SINE Alu 0 117 8 4 1372 222 37 0 0 chr6 103243137 103243164 -46273873 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1372 303 247 169 0 chr6 103243676 103243765 -46273272 + ID_B1 SINE B4 118 221 -3 4 1372 773 279 20 25 chr6 103244315 103244394 -46272643 + ID SINE ID 1 78 -146 4 1372 273 380 28 35 chr6 103244394 103244536 -46272501 + B1_Mur3 SINE Alu 1 141 -8 4 1372 279 0 0 0 chr6 103244946 103244977 -46272060 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1372 323 331 8 23 chr6 103244991 103245121 -46271916 + B1F1 SINE Alu 3 130 -19 4 1372 501 41 0 0 chr6 103245306 103245379 -46271658 - L1_Mus3 LINE L1 -1 6637 6565 4 1372 1106 101 0 0 chr6 103245989 103246137 -46270900 - B1_Mus1 SINE Alu 0 148 1 4 1372 511 60 0 0 chr6 103246245 103246312 -46270725 + B1_Mus2 SINE Alu 44 110 -37 4 1372 346 262 12 0 chr6 103246882 103246962 -46270075 - ID_B1 SINE B4 -21 203 123 4 1372 314 314 0 66 chr6 103246989 103247111 -46269926 - B1F SINE Alu -2 118 7 4 1372 626 325 14 103 chr6 103247506 103247729 -46269308 + B3 SINE B2 2 204 -12 4 1372 282 156 0 0 chr6 103247816 103247880 -46269157 + GA-rich Low_complexity Low_complexity 2 65 0 4 1372 254 279 16 0 chr6 103247882 103247943 -46269094 + ORSL DNA Tip100 213 274 -1 4 1372 357 238 12 12 chr6 103247959 103248044 -46268993 + Lx8 LINE L1 7243 7327 -146 4 1372 252 0 0 0 chr6 103248213 103248241 -46268796 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 4 1372 2676 35 0 0 chr6 103248242 103248557 -46268480 + L1_Mus1 LINE L1 6252 6566 -1 4 1372 813 240 20 15 chr6 103248587 103248790 -46268247 - B3 SINE B2 -10 206 3 4 1372 1920 216 96 20 chr6 103250718 103251258 -46265779 - Lx4B LINE L1 -4 7054 6474 4 1372 478 191 15 0 chr6 103251268 103251404 -46265633 + (TG)n Simple_repeat Simple_repeat 1 138 0 4 1372 722 310 17 38 chr6 103251469 103251761 -46265276 - B4 SINE B4 -6 286 1 4 1372 359 240 16 13 chr6 103252174 103252278 -46264759 + ID4_ SINE ID 10 114 -38 4 1372 378 344 13 35 chr6 103252685 103252857 -46264180 + ID_B1 SINE B4 63 230 -62 4 1372 337 305 10 21 chr6 103252996 103253093 -46263944 + B1F SINE Alu 45 140 -9 4 1372 513 0 0 0 chr6 103253182 103253239 -46263798 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1372 450 0 0 0 chr6 103253239 103253288 -46263749 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1372 258 106 0 0 chr6 103253312 103253359 -46263678 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1372 491 0 17 0 chr6 103253359 103253418 -46263619 + (CCA)n Simple_repeat Simple_repeat 3 62 0 4 1372 241 260 38 25 chr6 103253458 103253537 -46263500 + B4 SINE B4 1 80 -212 4 1372 198 0 0 0 chr6 103253576 103253598 -46263439 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1372 656 276 72 30 chr6 103253827 103254092 -46262945 - MER2 DNA MER2_type -30 315 40 4 1372 605 65 39 24 chr6 103255152 103255279 -46261758 + (TAGA)n Simple_repeat Simple_repeat 3 131 0 4 1372 1313 239 183 61 chr6 103255541 103256099 -46260938 - RMER20B LTR ERVK -1 626 1 4 1372 250 302 208 0 chr6 103256266 103256362 -46260675 - ID_B1 SINE B4 -2 222 107 4 1372 333 353 0 8 chr6 103256525 103256642 -46260395 - PB1D10 SINE Alu -1 116 1 4 1372 459 0 0 0 chr6 103257175 103257226 -46259811 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1372 259 296 7 40 chr6 103258812 103258960 -46258077 + CT-rich Low_complexity Low_complexity 5 147 0 4 1372 491 45 15 0 chr6 103259274 103259340 -46257697 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1372 320 259 25 167 chr6 103259442 103259604 -46257433 + ID_B1 SINE B4 86 224 0 4 1372 681 245 0 0 chr6 103259622 103259769 -46257268 + B1_Mm SINE Alu 1 147 0 4 1372 329 365 0 9 chr6 103259820 103259936 -46257101 + B1F1 SINE Alu 17 131 -18 4 1372 457 296 0 0 chr6 103260997 103261095 -46255942 + PB1D7 SINE Alu 15 112 -8 4 1372 350 42 0 20 chr6 103261102 103261151 -46255886 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 4 1372 299 182 0 13 chr6 103263353 103263431 -46253606 + (TTA)n Simple_repeat Simple_repeat 3 79 0 4 1372 360 315 13 9 chr6 103263445 103263661 -46253376 + L1MA6 LINE L1 5682 5900 -400 4 1372 295 341 132 23 chr6 103263736 103263910 -46253127 + MIR SINE MIR 49 241 -21 4 1372 810 73 0 0 chr6 103264593 103264716 -46252321 + (TCTG)n Simple_repeat Simple_repeat 2 124 0 4 1372 351 346 57 32 chr6 103264732 103264890 -46252147 + RSINE1 SINE B4 2 163 -2 4 1372 261 0 0 0 chr6 103264891 103264920 -46252117 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 4 1372 351 336 12 99 chr6 103264940 103265067 -46251970 + B1F1 SINE Alu 1 121 -28 4 1372 627 14 0 0 chr6 103265067 103265139 -46251898 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 1372 351 336 12 99 chr6 103265139 103265173 -46251864 + B1F1 SINE Alu 122 148 -1 4 1372 268 367 101 0 chr6 103266124 103266233 -46250804 + B1F1 SINE Alu 1 120 -29 4 1372 363 60 0 0 chr6 103266471 103266521 -46250516 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1372 387 0 0 0 chr6 103266521 103266563 -46250474 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1372 495 60 0 0 chr6 103267588 103267655 -46249382 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1372 2895 52 0 3 chr6 103268418 103268782 -46248255 - L1Md_F2 LINE L1 0 6582 6220 4 1372 180 0 0 0 chr6 103268805 103268825 -46248212 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 4 1372 210 303 92 0 chr6 103268836 103268912 -46248125 - B1_Mus2 SINE Alu -23 124 42 4 1372 830 239 39 14 chr6 103269361 103269569 -46247468 - B3 SINE B2 0 216 4 4 1372 399 264 5 78 chr6 103271045 103271238 -46245799 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 4 1372 375 371 0 6 chr6 103271155 103271331 -46245706 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 1372 426 69 0 0 chr6 103271351 103271409 -46245628 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1372 357 167 62 37 chr6 103272162 103272243 -46244794 - ID_B1 SINE B4 -7 217 135 4 1372 238 316 57 29 chr6 103272386 103272526 -46244511 - MIR SINE MIR -101 161 18 4 1372 184 370 64 46 chr6 103272664 103272746 -46244291 + MIR SINE MIR 68 149 -113 4 1372 2543 55 61 0 chr6 103272746 103273072 -46243965 - ORR1A1 LTR MaLR 0 346 1 4 1372 196 321 50 12 chr6 103273072 103273162 -46243875 + MIRb SINE MIR 150 247 -21 4 1372 7003 163 43 8 chr6 103273574 103274787 -46242250 - L1_Mur1 LINE L1 -1982 3904 2653 4 1372 522 46 0 0 chr6 103274787 103274852 -46242185 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1372 7003 163 43 8 chr6 103274852 103275086 -46241951 - L1_Mur1 LINE L1 -3234 2652 2408 4 1372 1089 185 43 7 chr6 103275097 103275375 -46241662 + L1_Mur2 LINE L1 4575 4862 -1015 4 1372 852 243 68 0 chr6 103275392 103275614 -46241423 + Lx3C LINE L1 6738 6974 -2 4 1372 988 97 0 0 chr6 103275618 103275752 -46241285 + L1_Mm LINE L1 5460 5593 -290 4 1372 3862 76 4 0 chr6 103275752 103276251 -46240786 + L1_Mus1 LINE L1 6067 6567 0 4 1372 22 35 0 0 chr6 103276254 103276283 -46240754 + AT_rich Low_complexity Low_complexity 1 29 0 4 1372 4255 166 103 16 chr6 103277064 103277899 -46239138 + RMER13B LTR ERVK 1 908 0 4 1372 2103 118 3 0 chr6 103277991 103278297 -46238740 - ORR1A2 LTR MaLR -20 307 1 4 1372 315 0 0 0 chr6 103278802 103278837 -46238200 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1372 707 308 80 8 chr6 103278881 103279130 -46237907 - B4A SINE B4 -24 268 2 4 1372 1060 76 0 0 chr6 103279284 103279429 -46237608 + L1_Mus2 LINE L1 6422 6566 0 4 1372 446 328 19 58 chr6 103279460 103279667 -46237370 + MLT1D LTR MaLR 307 505 0 4 1372 300 379 37 37 chr6 103279686 103279930 -46237107 + MLT1D-int LTR MaLR 33 276 -1095 4 1372 620 309 60 68 chr6 103280017 103280368 -46236669 + MLT1D-int LTR MaLR 264 611 -760 4 1372 264 288 14 0 chr6 103280374 103280447 -46236590 + CT-rich Low_complexity Low_complexity 2 75 0 4 1372 687 363 47 113 chr6 103280691 103281265 -46235772 + MLT1D-int LTR MaLR 608 1143 -228 4 1372 771 178 182 5 chr6 103281322 103281514 -46235523 - URR1A DNA MER1_type 0 226 1 4 1372 277 325 60 26 chr6 103281514 103281631 -46235406 + MLT1D LTR MaLR 256 376 -14 4 1372 21 0 0 0 chr6 103282007 103282028 -46235009 + AT_rich Low_complexity Low_complexity 1 21 0 4 1372 211 289 0 0 chr6 103283396 103283441 -46233596 + ID4_ SINE ID 39 83 0 4 1372 279 203 0 0 chr6 103283449 103283513 -46233524 + GA-rich Low_complexity Low_complexity 3 66 0 4 1373 504 234 0 0 chr6 103285362 103285456 -46231581 + B3A SINE B2 1 94 -104 4 1373 267 31 0 0 chr6 103285787 103285819 -46231218 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1373 240 349 15 15 chr6 103286019 103286086 -46230951 + B1F1 SINE Alu 1 67 -82 5 1373 428 298 29 51 chr6 103286071 103286209 -46230828 + B4A SINE B4 82 216 -76 5 1373 776 294 21 5 chr6 103286247 103286435 -46230602 + B3A SINE B2 2 192 -6 5 1373 303 71 0 0 chr6 103286476 103286518 -46230519 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1373 180 185 0 0 chr6 103286535 103286589 -46230448 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1373 22 0 0 0 chr6 103287054 103287076 -46229961 + AT_rich Low_complexity Low_complexity 1 22 0 5 1373 253 257 129 0 chr6 103287913 103287983 -46229054 - ID SINE ID -142 82 4 5 1373 263 365 18 36 chr6 103288052 103288163 -46228874 + ID_B1 SINE B4 105 213 -11 5 1373 493 284 22 7 chr6 103288819 103288954 -46228083 - B1F SINE Alu -2 147 11 5 1373 235 318 49 92 chr6 103288954 103288981 -46228056 - B4 SINE B4 -68 223 69 5 1373 852 10 0 0 chr6 103289527 103289624 -46227413 + (TTC)n Simple_repeat Simple_repeat 3 99 0 5 1373 422 296 34 27 chr6 103289674 103289820 -46227217 + B1F SINE Alu 3 149 0 5 1373 24 0 0 0 chr6 103289902 103289926 -46227111 + AT_rich Low_complexity Low_complexity 1 24 0 5 1373 180 351 0 38 chr6 103290680 103290760 -46226277 + MIRb SINE MIR 42 118 -150 5 1373 317 336 172 0 chr6 103290767 103290889 -46226148 + RSINE1 SINE B4 3 145 -20 5 1373 303 28 0 0 chr6 103290916 103290952 -46226085 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1373 214 389 60 67 chr6 103291177 103291326 -46225711 + B1F1 SINE Alu 1 148 -1 5 1373 1073 128 0 11 chr6 103292170 103292351 -46224686 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 5 1373 1191 107 0 0 chr6 103292951 103293129 -46223908 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 5 1373 380 20 0 20 chr6 103293129 103293179 -46223858 + (GGGGA)n Simple_repeat Simple_repeat 4 52 0 5 1373 1242 100 0 0 chr6 103293179 103293359 -46223678 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1373 183 42 0 0 chr6 103295024 103295048 -46221989 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1373 1516 256 31 28 chr6 103295483 103295906 -46221131 - RCHARR1 DNA MER1_type -1 973 550 5 1373 482 291 63 105 chr6 103296040 103296278 -46220759 - B4A SINE B4 -63 229 2 5 1373 1348 297 64 11 chr6 103296278 103296712 -46220325 - RCHARR1 DNA MER1_type -476 498 42 5 1373 432 0 0 0 chr6 103297531 103297579 -46219458 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1373 5260 50 26 4 chr6 103297579 103298279 -46218758 - L1Md_F2 LINE L1 -21 6561 5847 5 1373 230 327 159 0 chr6 103298644 103298751 -46218286 - MLT1L LTR MaLR -323 287 164 5 1373 231 325 148 12 chr6 103299562 103299643 -46217394 - ID_B1 SINE B4 -39 185 94 5 1373 822 283 28 55 chr6 103299680 103299897 -46217140 - B3 SINE B2 0 216 6 5 1373 975 179 22 0 chr6 103299980 103300159 -46216878 - B2_Mm2 SINE B2 -10 185 3 5 1373 459 0 0 0 chr6 103301107 103301158 -46215879 + (TAA)n Simple_repeat Simple_repeat 2 52 0 5 1373 244 336 43 58 chr6 103301406 103301545 -46215492 - B4A SINE B4 -154 138 2 5 1373 187 357 14 14 chr6 103301669 103301740 -46215297 - MER5A DNA MER1_type -112 77 7 5 1373 256 324 80 44 chr6 103301917 103302030 -46215007 - PB1D7 SINE Alu 0 120 4 5 1373 1240 154 52 0 chr6 103302058 103302291 -46214746 + Lx2 LINE L1 6753 6997 0 5 1373 286 255 9 138 chr6 103303445 103303554 -46213483 - L2c LINE L2 -6 3381 3287 5 1373 185 391 0 0 chr6 103303707 103303771 -46213266 - MIRm SINE MIR 0 276 213 5 1373 1050 189 211 3 chr6 103303890 103304082 -46212955 + Lx9 LINE L1 7261 7463 -181 5 1373 405 0 0 0 chr6 103304082 103304127 -46212910 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1373 1050 189 211 3 chr6 103304127 103304247 -46212790 + Lx9 LINE L1 7464 7637 -7 5 1373 22 35 0 0 chr6 103304256 103304285 -46212752 + AT_rich Low_complexity Low_complexity 1 29 0 5 1373 479 138 0 11 chr6 103304509 103304597 -46212440 + (GGGGA)n Simple_repeat Simple_repeat 5 91 0 5 1373 1305 83 0 0 chr6 103304597 103304777 -46212260 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1373 500 320 86 14 chr6 103304814 103305036 -46212001 + LFSINE_Vert SINE SINE 7 244 -215 5 1373 201 365 122 14 chr6 103305437 103305576 -46211461 + MIR SINE MIR 53 206 -56 5 1373 783 97 0 0 chr6 103306247 103306361 -46210676 + (TA)n Simple_repeat Simple_repeat 2 115 0 5 1373 794 189 13 26 chr6 103306378 103306530 -46210507 - B1_Mur4 SINE Alu 0 150 1 5 1373 812 296 0 20 chr6 103306616 103306816 -46210221 - B3 SINE B2 -12 204 9 5 1373 8799 45 1 0 chr6 103306838 103308682 -46208355 - L1Md_F2 LINE L1 -1 6581 4735 5 1373 652 304 61 34 chr6 103309518 103309780 -46207257 - B4 SINE B4 -13 279 11 5 1373 1950 178 20 51 chr6 103310178 103310587 -46206450 - RMER10B LTR ERVL -2 396 1 5 1373 280 275 26 44 chr6 103310990 103311104 -46205933 + Lx8 LINE L1 6967 7078 -395 5 1373 3560 54 10 0 chr6 103311343 103311876 -46205161 - L1_Mus3 LINE L1 -499 6067 5530 5 1373 3979 94 22 0 chr6 103311876 103312429 -46204608 + L1_Mus3 LINE L1 6067 6631 -7 5 1373 542 248 172 14 chr6 103313189 103313398 -46203639 + Tigger13a DNA MER2_type 140 381 -390 5 1373 530 272 0 9 chr6 103313417 103313532 -46203505 + RSINE1 SINE B4 12 125 -40 5 1373 774 124 0 0 chr6 103313557 103313678 -46203359 + (TC)n Simple_repeat Simple_repeat 2 122 0 5 1373 510 17 0 0 chr6 103313680 103313739 -46203298 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1373 407 250 42 25 chr6 103313831 103313950 -46203087 + Tigger13a DNA MER2_type 465 585 -186 5 1373 29 60 0 0 chr6 103314703 103314753 -46202284 + AT_rich Low_complexity Low_complexity 1 50 0 5 1373 251 357 18 18 chr6 103315022 103315136 -46201901 + MIRc SINE MIR 31 144 -124 5 1373 215 368 9 9 chr6 103316101 103316208 -46200829 + (TG)n Simple_repeat Simple_repeat 2 108 0 5 1373 435 52 0 0 chr6 103316333 103316391 -46200646 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1373 247 304 0 0 chr6 103316393 103316462 -46200575 - B4 SINE B4 -212 80 12 5 1373 285 238 0 35 chr6 103316506 103316593 -46200444 - RMER1C Other Other 0 1342 1259 5 1373 391 295 4 9 chr6 103316657 103316801 -46200236 - Lx9 LINE L1 -471 7173 6897 5 1373 186 295 76 41 chr6 103316871 103317016 -46200021 - L2c LINE L2 -2 3385 3236 5 1373 285 283 91 70 chr6 103317224 103317241 -46199796 - RLTR21 LTR ERVK -152 1420 1406 5 1373 297 0 0 0 chr6 103317241 103317274 -46199763 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1373 285 275 93 62 chr6 103317274 103317569 -46199468 - RLTR21 LTR ERVK -167 1405 1173 5 1373 237 167 0 0 chr6 103317569 103317623 -46199414 + CT-rich Low_complexity Low_complexity 1 54 0 5 1373 636 228 0 0 chr6 103317657 103317828 -46199209 + (CA)n Simple_repeat Simple_repeat 2 172 0 5 1373 405 0 0 0 chr6 103317828 103317873 -46199164 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1373 198 191 0 0 chr6 103317873 103317920 -46199117 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1373 235 312 26 0 chr6 103318027 103318104 -46198933 - MLT1A0 LTR MaLR -8 366 288 5 1373 486 33 0 0 chr6 103318147 103318207 -46198830 + (GGGA)n Simple_repeat Simple_repeat 4 63 0 5 1373 244 264 27 40 chr6 103318273 103318348 -46198689 - MLT1A0 LTR MaLR -233 132 59 5 1373 192 370 90 21 chr6 103318407 103318595 -46198442 - L2c LINE L2 -703 2716 2516 5 1373 244 267 50 0 chr6 103318679 103318739 -46198298 - MER58B DNA MER1_type -24 317 255 5 1373 1937 216 13 3 chr6 103318783 103319168 -46197869 - Lx4A LINE L1 -10 7048 6660 5 1373 5842 81 7 16 chr6 103319163 103319969 -46197068 - L1Md_F2 LINE L1 -1 6581 5783 5 1373 4844 39 37 0 chr6 103319965 103320554 -46196483 - L1Md_T LINE L1 0 6582 5972 5 1373 233 35 0 0 chr6 103320554 103320583 -46196454 - Lx LINE L1 -869 5785 5757 5 1373 745 146 33 0 chr6 103320582 103320733 -46196304 - Lx4A LINE L1 -395 6663 6508 5 1373 652 217 111 22 chr6 103320743 103320969 -46196068 + Lx4A LINE L1 5974 6219 -839 5 1373 441 0 0 0 chr6 103321183 103321232 -46195805 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1373 342 45 0 0 chr6 103321232 103321275 -46195762 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1373 451 333 59 0 chr6 103321288 103321423 -46195614 - B3A SINE B2 -55 143 1 5 1373 390 349 23 23 chr6 103322389 103322565 -46194472 + MIR SINE MIR 79 254 -8 5 1373 566 227 31 92 chr6 103322875 103323069 -46193968 - Lx7 LINE L1 -1941 5755 5539 5 1373 291 330 19 0 chr6 103323135 103323241 -46193796 + Lx8 LINE L1 7169 7276 -197 5 1373 414 0 0 0 chr6 103323643 103323689 -46193348 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1373 459 52 0 0 chr6 103323743 103323801 -46193236 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1373 513 0 0 0 chr6 103323917 103323974 -46193063 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1373 413 271 19 0 chr6 103323987 103324094 -46192943 - PB1D7 SINE Alu -11 109 1 5 1373 509 224 62 23 chr6 103326318 103326446 -46190591 - B1_Mur3 SINE Alu -16 133 1 5 1373 264 320 24 49 chr6 103326913 103327077 -46189960 - L2a LINE L2 -4 3422 3263 5 1373 526 260 38 8 chr6 103328571 103328703 -46188334 - B3 SINE B2 0 216 81 5 1373 379 322 32 38 chr6 103328799 103328957 -46188080 + MTEb LTR MaLR 1 157 -222 5 1373 870 62 0 0 chr6 103329330 103329443 -46187594 + (CA)n Simple_repeat Simple_repeat 2 114 0 5 1373 243 0 0 0 chr6 103329655 103329682 -46187355 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1373 559 93 0 69 chr6 103330277 103330393 -46186644 + L1Md_F3 LINE L1 6476 6583 -1 5 1373 483 69 0 0 chr6 103331539 103331611 -46185426 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1373 211 271 143 0 chr6 103332607 103332677 -46184360 + MIR3 SINE MIR 99 178 -30 5 1373 497 337 10 53 chr6 103333292 103333499 -46183538 - MER3 DNA MER1_type -11 198 1 5 1373 234 0 0 0 chr6 103333521 103333547 -46183490 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1373 244 297 133 0 chr6 103333550 103333678 -46183359 - B1_Mm SINE Alu 0 147 3 5 1373 180 0 0 0 chr6 103333702 103333722 -46183315 + (TCCA)n Simple_repeat Simple_repeat 4 23 0 5 1373 437 219 108 58 chr6 103334045 103334268 -46182769 + Lx9 LINE L1 7367 7600 -44 6 1373 233 295 0 87 chr6 103334778 103334882 -46182155 - L2c LINE L2 0 3387 3293 6 1373 468 279 36 29 chr6 103334941 103335081 -46181956 - MER63B DNA AcHobo -11 425 285 6 1373 1060 159 16 134 chr6 103335150 103335397 -46181640 + URR1B DNA MER1_type 5 222 -3 6 1373 22 80 0 0 chr6 103335457 103335507 -46181530 + AT_rich Low_complexity Low_complexity 1 50 0 6 1373 370 253 199 48 chr6 103340065 103340231 -46176806 - MER20 DNA MER1_type 0 219 29 6 1373 196 368 97 22 chr6 103340316 103340481 -46176556 - MIR3 SINE MIR -22 186 14 6 1373 592 279 34 0 chr6 103341272 103341419 -46175618 + RSINE1 SINE B4 2 153 -12 6 1373 216 67 0 0 chr6 103341443 103341473 -46175564 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1373 248 389 40 0 chr6 103342703 103342829 -46174208 + LTR88b LTR Gypsy? 30 160 -677 6 1373 242 185 106 15 chr6 103342984 103343050 -46173987 - MLT1D LTR MaLR -146 359 288 6 1373 203 103 0 25 chr6 103343055 103343095 -46173942 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 6 1373 6483 76 6 1 chr6 103343115 103343981 -46173056 - L1_Mus2 LINE L1 -1 6565 5681 6 1373 21 0 0 0 chr6 103344247 103344268 -46172769 + AT_rich Low_complexity Low_complexity 1 21 0 6 1373 914 288 106 16 chr6 103344277 103344613 -46172424 + MTD LTR MaLR 1 405 -14 6 1373 685 255 0 7 chr6 103344838 103344988 -46172049 - B1_Mur4 SINE Alu 0 150 2 6 1373 198 0 0 0 chr6 103346474 103346496 -46170541 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1373 213 391 22 7 chr6 103346535 103346674 -46170363 + L3 LINE CR1 4092 4232 -257 6 1373 232 318 130 39 chr6 103347219 103347373 -46169664 + MLT1J1 LTR MaLR 261 428 -16 6 1373 493 324 0 0 chr6 103348988 103349135 -46167902 - B1F SINE Alu 0 150 4 6 1373 296 279 157 48 chr6 103349171 103349337 -46167700 + Tigger7 DNA MER2_type 2304 2487 -4 6 1373 290 340 152 44 chr6 103349408 103350066 -46166971 - L2 LINE L2 -778 2641 1913 6 1373 371 188 0 0 chr6 103350249 103350313 -46166724 - MTD LTR MaLR 0 419 356 6 1373 634 275 70 0 chr6 103350310 103350481 -46166556 - MTD LTR MaLR -235 184 2 6 1373 370 262 102 46 chr6 103351132 103351240 -46165797 + PB1D9 SINE Alu 7 120 0 6 1373 283 303 13 0 chr6 103351296 103351372 -46165665 - MTE2b LTR MaLR -302 77 1 6 1373 2965 89 5 12 chr6 103351674 103352104 -46164933 + L1Md_F2 LINE L1 6144 6570 -12 6 1373 706 203 14 28 chr6 103352358 103352500 -46164537 + B1_Mur1 SINE Alu 7 146 -3 6 1373 245 395 35 47 chr6 103353517 103353602 -46163435 + B1F1 SINE Alu 2 85 -64 6 1373 276 30 0 0 chr6 103354491 103354524 -46162513 + (TATG)n Simple_repeat Simple_repeat 2 34 0 6 1373 665 306 25 0 chr6 103354529 103354686 -46162351 - B3 SINE B2 -54 162 2 6 1373 275 253 68 40 chr6 103355571 103355664 -46161373 + LTR16E2 LTR ERVL 488 651 0 6 1373 506 313 53 40 chr6 103356055 103356281 -46160756 + MTD LTR MaLR 1 229 -190 6 1373 644 177 6 102 chr6 103356282 103356451 -46160586 + Lx4A LINE L1 6900 7053 -5 6 1373 204 67 0 0 chr6 103356451 103356481 -46160556 + (TTAAA)n Simple_repeat Simple_repeat 3 32 0 6 1373 680 256 85 58 chr6 103356502 103356734 -46160303 + MTD LTR MaLR 181 419 0 6 1373 36360 42 4 15 chr6 103356834 103362094 -46154943 + L1Md_A LINE L1 389 5586 -297 6 1373 8190 45 0 0 chr6 103362094 103363090 -46153947 + L1Md_A LINE L1 5587 6582 0 6 1373 21 0 0 0 chr6 103363090 103363111 -46153926 + AT_rich Low_complexity Low_complexity 1 21 0 6 1373 354 389 93 26 chr6 103363192 103363656 -46153381 - L2 LINE L2 -349 3070 2576 6 1373 3093 106 9 9 chr6 103363712 103364171 -46152866 - Lx3_Mus LINE L1 0 7009 6551 6 1373 873 148 5 69 chr6 103364171 103364370 -46152667 - Lx2 LINE L1 -262 6735 6598 6 1373 1691 95 0 4 chr6 103364393 103364633 -46152404 + L1_Mus2 LINE L1 6123 6326 -240 6 1373 183 367 18 18 chr6 103364720 103364831 -46152206 - L2 LINE L2 -1028 2391 2281 6 1373 416 314 75 25 chr6 103364855 103365015 -46152022 - MER58A DNA MER1_type -32 192 25 6 1373 210 37 0 0 chr6 103365176 103365203 -46151834 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 6 1373 1033 284 88 44 chr6 103365216 103365541 -46151496 - MTD LTR MaLR -53 366 27 6 1373 457 298 127 47 chr6 103365541 103365879 -46151158 - RLTR9A LTR ERVK -3 365 1 6 1373 604 315 8 112 chr6 103366140 103366319 -46150718 + B4A SINE B4 49 216 -76 6 1373 1167 109 0 0 chr6 103366319 103366493 -46150544 + (CATA)n Simple_repeat Simple_repeat 3 176 0 6 1373 2952 62 10 8 chr6 103366495 103366888 -46150149 - MTA_Mm LTR MaLR 0 396 3 6 1373 604 315 8 112 chr6 103366888 103366973 -46150064 + B4A SINE B4 217 288 -4 6 1373 595 226 219 6 chr6 103367177 103367346 -46149691 - B3 SINE B2 -9 207 3 6 1373 2001 134 57 30 chr6 103367375 103367744 -46149293 - Lx LINE L1 -3 6651 6273 6 1373 195 335 91 24 chr6 103368050 103368215 -46148822 - MIRc SINE MIR -67 201 26 6 1373 441 352 63 36 chr6 103368422 103368755 -46148282 - L2 LINE L2 -788 2631 2290 6 1373 234 269 19 0 chr6 103369849 103369901 -46147136 - B3A SINE B2 -112 86 34 6 1373 185 299 104 0 chr6 103371240 103371307 -46145730 - L3b LINE CR1 -22 460 387 6 1373 342 264 42 0 chr6 103371905 103371977 -46145060 + B1F SINE Alu 43 117 -32 6 1373 319 267 0 13 chr6 103371910 103371986 -46145051 + ID_B1 SINE B4 129 203 -21 6 1373 250 147 0 51 chr6 103372085 103372164 -46144873 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 6 1373 681 275 149 22 chr6 103372387 103372840 -46144197 + MLT2B2 LTR ERVL 1 546 -10 6 1373 4398 78 35 13 chr6 103372987 103373608 -46143429 - L1_Mur1 LINE L1 -49 5837 5203 6 1373 1838 103 7 0 chr6 103373608 103373880 -46143157 + Lx3_Mus LINE L1 6736 7009 0 6 1373 1002 127 44 0 chr6 103373908 103374066 -46142971 - B2_Mm2 SINE B2 -29 166 2 6 1373 342 0 0 0 chr6 103374618 103374656 -46142381 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1373 348 39 0 0 chr6 103375345 103375396 -46141641 + L1Md_T LINE L1 6532 6582 0 6 1373 302 159 0 31 chr6 103375789 103375854 -46141183 + CT-rich Low_complexity Low_complexity 2 64 0 6 1373 230 239 22 0 chr6 103376275 103376321 -46140716 + B4A SINE B4 77 123 -169 6 1373 354 286 87 26 chr6 103376291 103376406 -46140631 + ID_B1 SINE B4 90 211 -13 6 1373 3868 73 2 0 chr6 103376433 103376955 -46140082 - L1_Mm LINE L1 -3349 2534 2012 6 1373 1368 68 6 0 chr6 103376943 103377119 -46139918 + L1Md_F2 LINE L1 5410 5586 -297 6 1373 7868 57 2 4 chr6 103377119 103378177 -46138860 + L1Md_F2 LINE L1 5587 6582 0 6 1373 195 324 13 109 chr6 103378817 103378973 -46138064 + MIRb SINE MIR 86 226 -42 6 1373 781 312 34 0 chr6 103379270 103379478 -46137559 + B4A SINE B4 51 265 -27 6 1373 584 97 0 11 chr6 103379491 103379585 -46137452 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 1373 297 0 0 0 chr6 103379603 103379636 -46137401 + (CAAT)n Simple_repeat Simple_repeat 2 34 0 6 1373 246 180 48 32 chr6 103380169 103380232 -46136805 + MLT1A1 LTR MaLR 332 395 -13 6 1373 240 35 0 0 chr6 103381999 103382028 -46135009 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 6 1373 449 302 53 23 chr6 103382210 103382342 -46134695 + B1_Mur2 SINE Alu 14 149 0 6 1373 236 304 94 17 chr6 103382564 103382681 -46134356 - L1MC4 LINE L1 -223 7819 7694 6 1373 483 18 0 0 chr6 103382982 103383038 -46133999 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1373 231 36 0 0 chr6 103383144 103383172 -46133865 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1373 1315 175 113 14 chr6 103383172 103383450 -46133587 + RMER4A LTR ERVK 159 466 0 6 1373 646 182 74 7 chr6 103383452 103383601 -46133436 + RMER4A LTR ERVK 308 466 0 6 1373 202 234 21 0 chr6 103384227 103384274 -46132763 + GA-rich Low_complexity Low_complexity 4 51 0 6 1373 180 111 0 0 chr6 103384274 103384301 -46132736 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1373 229 277 24 24 chr6 103384323 103384408 -46132629 + Lx7 LINE L1 7282 7366 -330 6 1373 330 315 22 58 chr6 103384428 103384566 -46132471 + B3A SINE B2 9 141 -57 6 1373 801 182 24 36 chr6 103384567 103384732 -46132305 - URR1A DNA MER1_type 0 226 64 6 1373 330 26 0 0 chr6 103384965 103385004 -46132033 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 6 1373 900 292 148 9 chr6 103385044 103385369 -46131668 + ORR1D2 LTR MaLR 1 370 0 6 1373 276 186 0 0 chr6 103385429 103385472 -46131565 + L1VL4 LINE L1 193 235 -6067 6 1373 17763 104 9 8 chr6 103385472 103388949 -46128088 + L1VL4 LINE L1 17 3499 -60 6 1373 1687 75 0 5 chr6 103389328 103389542 -46127495 - L1_Mus2 LINE L1 -142 6424 6212 6 1373 1034 83 0 0 chr6 103389542 103389686 -46127351 + L1_Mus2 LINE L1 6423 6566 0 6 1373 215 0 0 62 chr6 103389966 103389998 -46127039 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1373 201 74 0 0 chr6 103390540 103390567 -46126470 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 1373 372 130 33 0 chr6 103390566 103390658 -46126379 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 1373 184 330 51 17 chr6 103390694 103390811 -46126226 - MIR SINE MIR -55 207 87 6 1373 449 70 0 40 chr6 103390976 103391051 -46125986 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1373 459 284 78 26 chr6 103392299 103392516 -46124521 - MIR SINE MIR -3 259 33 6 1373 188 35 35 0 chr6 103393010 103393039 -46123998 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 6 1373 228 321 106 50 chr6 103393333 103393474 -46123563 + MER101B LTR ERV1 377 525 -45 6 1373 13134 116 15 11 chr6 103393926 103396859 -46120178 - L1_Mus3 LINE L1 -3 6635 3699 6 1373 12552 127 20 8 chr6 103396891 103399722 -46117315 - L1VL2 LINE L1 -607 3008 143 6 1373 414 345 39 48 chr6 103399788 103400108 -46116929 + MLT1E1 LTR MaLR 316 650 -4 6 1373 556 365 24 0 chr6 103400146 103400316 -46116721 + ID_B1 SINE B4 1 174 -50 7 1373 32 26 0 0 chr6 103400342 103400381 -46116656 + AT_rich Low_complexity Low_complexity 1 39 0 7 1373 241 302 8 41 chr6 103400395 103400423 -46116614 + YREP_Mm Unknown Unknown 202 314 -1494 7 1373 316 345 0 22 chr6 103400423 103400512 -46116525 - ID_B1 SINE B4 -55 169 83 7 1373 222 118 0 0 chr6 103401935 103401969 -46115068 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1373 329 350 65 33 chr6 103402039 103402314 -46114723 + B4A SINE B4 3 286 -6 7 1373 774 64 16 16 chr6 103402542 103402669 -46114368 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 7 1373 438 20 0 0 chr6 103402669 103402720 -46114317 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1373 516 361 70 59 chr6 103402733 103403019 -46114018 + B4A SINE B4 4 292 0 7 1373 229 263 0 17 chr6 103403026 103403084 -46113953 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1373 6632 48 0 0 chr6 103403144 103403958 -46113079 + L1Md_T LINE L1 4773 5586 -297 7 1373 8281 37 1 6 chr6 103403958 103404959 -46112078 + L1Md_T LINE L1 5587 6582 0 7 1373 3896 68 0 42 chr6 103404956 103405497 -46111540 + L1Md_F2 LINE L1 6065 6582 0 7 1373 271 349 72 26 chr6 103405909 103406062 -46110975 - MLT1H2 LTR MaLR -216 273 114 7 1373 1144 82 0 12 chr6 103406064 103406224 -46110813 + L1_Mus2 LINE L1 6408 6565 -1 7 1373 273 374 12 61 chr6 103406442 103406607 -46110430 - MER5A1 DNA MER1_type -6 160 4 7 1373 198 196 43 43 chr6 103406654 103406771 -46110266 + (TATATG)n Simple_repeat Simple_repeat 3 119 0 7 1373 477 289 31 0 chr6 103407168 103407296 -46109741 - RSINE1 SINE B4 0 165 34 7 1373 297 329 0 0 chr6 103407296 103407372 -46109665 - RSINE1 SINE B4 -87 78 3 7 1373 504 32 0 0 chr6 103407444 103407506 -46109531 + (TC)n Simple_repeat Simple_repeat 2 63 0 7 1373 552 30 0 0 chr6 103407506 103407571 -46109466 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1373 304 376 82 6 chr6 103408055 103408237 -46108800 + LTR33 LTR ERVL 310 505 -10 7 1373 325 257 9 71 chr6 103409370 103409483 -46107554 - L1MB2 LINE L1 -21 6150 6045 7 1373 535 330 20 46 chr6 103409597 103409794 -46107243 - B4A SINE B4 -4 288 97 7 1373 1465 238 55 8 chr6 103409916 103410277 -46106760 - Lx6 LINE L1 -6 7454 7077 7 1373 1098 233 32 167 chr6 103410871 103411013 -46106024 + ORR1D1 LTR MaLR 1 134 -240 7 1373 1744 67 0 0 chr6 103411013 103411238 -46105799 - L1_Mus2 LINE L1 0 6566 6342 7 1373 1098 233 32 167 chr6 103411238 103411263 -46105774 + ORR1D1 LTR MaLR 135 156 -218 7 1373 207 100 0 0 chr6 103411263 103411293 -46105744 + (TCTCTG)n Simple_repeat Simple_repeat 2 31 0 7 1373 1098 233 32 167 chr6 103411293 103411556 -46105481 + ORR1D1 LTR MaLR 157 374 0 7 1373 26 50 0 0 chr6 103413125 103413165 -46103872 + AT_rich Low_complexity Low_complexity 1 40 0 7 1373 262 188 217 0 chr6 103413293 103413362 -46103675 + B4A SINE B4 5 88 -204 7 1373 294 87 0 0 chr6 103413383 103413429 -46103608 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 7 1373 23 33 0 0 chr6 103413881 103413911 -46103126 + AT_rich Low_complexity Low_complexity 1 30 0 7 1373 243 0 0 0 chr6 103414417 103414444 -46102593 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1373 477 378 48 0 chr6 103414471 103414659 -46102378 + ID_B1 SINE B4 5 201 -23 7 1373 261 0 0 0 chr6 103414672 103414701 -46102336 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1373 486 0 0 0 chr6 103415449 103415503 -46101534 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 171 1873 170 24 58 chr6 103415570 103415950 -46101087 + ORR1B2 LTR MaLR 1 367 0 7 1374 612 284 104 58 chr6 103416486 103417017 -46100020 - Lx7 LINE L1 -1521 6175 5621 7 1374 540 305 77 12 chr6 103417028 103417197 -46099840 + B3A SINE B2 18 197 -1 7 1374 628 281 128 15 chr6 103418169 103418491 -46098546 - ORR1D2 LTR MaLR -2 357 1 7 1374 1552 267 31 20 chr6 103418652 103419099 -46097938 + Lx8 LINE L1 6703 7154 -319 7 1374 329 282 17 52 chr6 103419183 103419299 -46097738 + RMER1B Other Other 43 154 -912 7 1374 347 291 19 28 chr6 103419496 103419602 -46097435 + RMER1C Other Other 485 589 -753 7 1374 4933 101 62 14 chr6 103419615 103420386 -46096651 + RLTR13C2 LTR ERVK 1 808 0 7 1374 2154 267 148 24 chr6 103420393 103421212 -46095825 + RMER1C Other Other 163 1342 0 7 1374 583 273 98 65 chr6 103421217 103421523 -46095514 + Lx8 LINE L1 7140 7455 -18 7 1374 468 0 0 0 chr6 103422325 103422377 -46094660 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1374 613 302 39 24 chr6 103426341 103426548 -46090489 - B3 SINE B2 -1 215 6 7 1374 3784 161 49 4 chr6 103426936 103427647 -46089390 - L1_Mur1 LINE L1 -200 5686 4944 7 1374 39876 22 0 6 chr6 103427866 103434054 -46082983 - L1Md_A LINE L1 0 6582 435 7 1374 210 143 0 0 chr6 103434179 103434214 -46082823 + (CTG)n Simple_repeat Simple_repeat 3 37 0 7 1374 774 160 8 0 chr6 103434373 103434498 -46082539 + B1_Mus2 SINE Alu 21 146 -1 7 1374 531 0 0 0 chr6 103435035 103435094 -46081943 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1374 318 79 48 0 chr6 103435095 103435158 -46081879 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1374 1063 171 23 0 chr6 103435356 103435531 -46081506 - RLTR28B LTR ERVL -3 478 300 7 1374 1633 98 8 23 chr6 103435549 103435809 -46081228 - L1Md_F2 LINE L1 -10 6572 6317 7 1374 368 0 0 0 chr6 103435812 103435852 -46081185 + L1_Mur1 LINE L1 5490 5529 -357 7 1374 1311 186 99 0 chr6 103435866 103436129 -46080908 - RLTR28B LTR ERVL -166 315 27 7 1374 473 58 14 0 chr6 103436204 103436273 -46080764 + (CA)n Simple_repeat Simple_repeat 1 70 0 7 1374 297 51 0 0 chr6 103439288 103439327 -46077710 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1374 180 0 0 0 chr6 103439327 103439347 -46077690 + (CATG)n Simple_repeat Simple_repeat 3 22 0 7 1374 22 35 0 0 chr6 103439679 103439708 -46077329 + AT_rich Low_complexity Low_complexity 1 29 0 7 1374 401 317 86 6 chr6 103440350 103440512 -46076525 - MLT1B LTR MaLR -161 229 55 7 1374 224 359 34 40 chr6 103440649 103440797 -46076240 - B1F2 SINE Alu 0 149 3 7 1374 810 330 55 28 chr6 103441293 103441620 -46075417 + MLT1B LTR MaLR 55 390 0 7 1374 21 0 0 0 chr6 103441912 103441933 -46075104 + AT_rich Low_complexity Low_complexity 1 21 0 7 1374 602 49 12 0 chr6 103441970 103442052 -46074985 + (TC)n Simple_repeat Simple_repeat 2 84 0 7 1374 447 19 0 0 chr6 103442052 103442103 -46074934 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1374 670 309 50 77 chr6 103442130 103442428 -46074609 - B4 SINE B4 -1 291 2 7 1374 523 348 84 22 chr6 103442892 103443118 -46073919 + B4A SINE B4 53 292 0 7 1374 299 185 43 21 chr6 103443118 103443212 -46073825 + (CA)n Simple_repeat Simple_repeat 1 96 0 7 1374 2237 206 31 29 chr6 103443453 103443937 -46073100 + RMER15 LTR ERVL 1 485 -90 7 1374 225 0 0 0 chr6 103443937 103443962 -46073075 + (TA)n Simple_repeat Simple_repeat 2 26 0 7 1374 1494 243 52 24 chr6 103443989 103444378 -46072659 - MTD LTR MaLR -15 404 15 7 1374 567 271 31 8 chr6 103444411 103444541 -46072496 - B1F SINE Alu -16 133 1 7 1374 984 241 208 20 chr6 103445522 103446046 -46070991 - Lx7 LINE L1 -1521 6175 5554 7 1374 2340 249 15 7 chr6 103446107 103446335 -46070702 + Lx6 LINE L1 6515 6743 -717 7 1374 183 42 0 0 chr6 103446335 103446359 -46070678 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 7 1374 774 0 0 0 chr6 103446362 103446448 -46070589 + (GAGAA)n Simple_repeat Simple_repeat 2 87 0 7 1374 2340 249 15 7 chr6 103446448 103446762 -46070275 + Lx6 LINE L1 6744 7060 -400 7 1374 245 29 0 29 chr6 103446791 103446826 -46070211 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1374 479 17 17 0 chr6 103446830 103446890 -46070147 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1374 186 71 0 0 chr6 103448143 103448171 -46068866 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1374 26 0 0 0 chr6 103448824 103448850 -46068187 + AT_rich Low_complexity Low_complexity 1 26 0 7 1374 575 139 0 10 chr6 103449288 103449390 -46067647 + (TTCC)n Simple_repeat Simple_repeat 4 104 0 7 1374 288 267 13 13 chr6 103449390 103449466 -46067571 - PB1D10 SINE Alu 0 117 42 7 1374 343 305 99 10 chr6 103450338 103450530 -46066507 - L1MEf LINE L1 -4476 1724 1516 7 1374 369 344 63 49 chr6 103450712 103450917 -46066120 - B4 SINE B4 -16 276 69 7 1374 229 408 0 0 chr6 103451083 103451186 -46065851 + B1F1 SINE Alu 7 109 -40 7 1374 504 100 0 0 chr6 103452466 103452546 -46064491 + (TC)n Simple_repeat Simple_repeat 1 80 0 7 1374 417 305 66 82 chr6 103452547 103452668 -46064369 - L1MB1 LINE L1 -290 5899 5778 7 1374 447 92 0 0 chr6 103452668 103452733 -46064304 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1374 417 305 66 82 chr6 103452733 103452975 -46064062 - L1MB1 LINE L1 -412 5777 5542 7 1374 1055 288 43 32 chr6 103452957 103453327 -46063710 - Lx8 LINE L1 -971 6502 6129 7 1374 1477 269 129 85 chr6 103453462 103454033 -46063004 - L1M2 LINE L1 -943 5200 4560 7 1374 911 322 15 46 chr6 103454033 103454424 -46062613 + MTEa LTR MaLR 1 379 0 7 1374 1477 269 129 85 chr6 103454424 103455005 -46062032 - L1M2 LINE L1 -1584 4559 4017 7 1374 466 316 36 0 chr6 103455005 103455144 -46061893 - RSINE1 SINE B4 -17 148 5 7 1374 1477 269 129 85 chr6 103455144 103455262 -46061775 - L1M2 LINE L1 -2127 4016 3896 7 1374 456 28 40 27 chr6 103455262 103455336 -46061701 + (TATG)n Simple_repeat Simple_repeat 2 76 0 7 1374 1477 269 129 85 chr6 103455336 103455456 -46061581 - L1M2 LINE L1 -2248 3895 3748 7 1374 1444 166 63 70 chr6 103455624 103455955 -46061082 - ORR1A4 LTR MaLR 0 329 1 7 1374 254 86 0 108 chr6 103456177 103456242 -46060795 + Lx3_Mus LINE L1 6003 6060 -949 7 1374 5569 129 26 29 chr6 103456242 103457230 -46059807 + Lx3A LINE L1 5995 6979 -2 7 1374 231 167 136 37 chr6 103457230 103457245 -46059792 + Lx3_Mus LINE L1 6071 6083 -890 7 1374 411 113 0 0 chr6 103458615 103458677 -46058360 + (TCC)n Simple_repeat Simple_repeat 2 63 0 7 1374 617 167 8 0 chr6 103458673 103458799 -46058238 + CT-rich Low_complexity Low_complexity 2 128 0 7 1374 369 0 0 0 chr6 103458971 103459012 -46058025 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1374 636 133 0 0 chr6 103459221 103459341 -46057696 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 7 1374 199 247 98 33 chr6 103462476 103462568 -46054469 + MIR SINE MIR 33 130 -132 7 1374 185 321 136 19 chr6 103465852 103466065 -46050972 + MIRb SINE MIR 30 267 -1 8 1374 184 355 157 9 chr6 103466223 103466331 -46050706 + MER5B DNA MER1_type 2 125 -53 8 1374 24 32 0 0 chr6 103466825 103466856 -46050181 + AT_rich Low_complexity Low_complexity 1 31 0 8 1374 386 266 76 0 chr6 103468782 103468861 -46048176 + PB1D10 SINE Alu 1 85 -32 8 1374 303 194 0 31 chr6 103469656 103469720 -46047317 - MTE2a LTR MaLR -303 76 15 8 1374 248 276 36 54 chr6 103471114 103471225 -46045812 + MIR SINE MIR 108 216 -46 8 1374 486 228 0 0 chr6 103473395 103473522 -46043515 + (TA)n Simple_repeat Simple_repeat 2 128 0 8 1374 793 239 72 95 chr6 103473522 103473962 -46043075 - MT2A LTR ERVL -60 541 13 8 1374 293 344 57 64 chr6 103474544 103474824 -46042213 + ORR1E LTR MaLR 82 359 0 8 1374 270 95 0 0 chr6 103474962 103475004 -46042033 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1374 405 0 0 0 chr6 103475186 103475231 -46041806 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1374 450 0 0 0 chr6 103475231 103475280 -46041757 + (GA)n Simple_repeat Simple_repeat 1 50 0 8 1374 477 318 188 23 chr6 103476606 103476951 -46040086 - RMER5 LTR ERV1 -64 470 69 8 1374 333 0 0 0 chr6 103477813 103477850 -46039187 + (CATA)n Simple_repeat Simple_repeat 2 38 0 8 1374 1191 231 73 62 chr6 103478296 103478651 -46038386 + MTE2b LTR MaLR 18 376 -3 8 1374 2380 99 6 6 chr6 103479466 103479992 -46037045 + L1_Mus2 LINE L1 6213 6566 0 8 1374 902 101 0 7 chr6 103479993 103480143 -46036894 + (GA)n Simple_repeat Simple_repeat 1 149 0 8 1374 205 162 0 0 chr6 103480891 103480928 -46036109 + CT-rich Low_complexity Low_complexity 2 38 0 8 1374 405 86 0 0 chr6 103480934 103480992 -46036045 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1374 342 0 0 0 chr6 103480992 103481029 -46036008 + (GA)n Simple_repeat Simple_repeat 2 39 0 8 1374 876 28 0 0 chr6 103481334 103481441 -46035596 + (TC)n Simple_repeat Simple_repeat 2 108 0 8 1374 240 225 185 12 chr6 103481717 103481798 -46035239 + PB1D10 SINE Alu 23 117 0 8 1374 214 327 70 35 chr6 103481917 103482031 -46035006 + B1F SINE Alu 18 135 -14 8 1374 264 226 16 0 chr6 103482045 103482107 -46034930 + ID4 SINE ID 5 67 -16 8 1374 219 69 0 0 chr6 103482195 103482224 -46034813 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 8 1374 831 289 5 25 chr6 103482448 103482650 -46034387 + B3A SINE B2 1 198 0 8 1374 240 35 0 0 chr6 103483387 103483416 -46033621 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 8 1374 198 103 0 0 chr6 103483679 103483708 -46033329 + (GA)n Simple_repeat Simple_repeat 1 29 0 8 1374 292 116 0 0 chr6 103485260 103485303 -46031734 - ID_B1 SINE B4 -6 218 176 8 1374 206 0 0 65 chr6 103485684 103485715 -46031322 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1374 353 290 101 87 chr6 103486147 103486423 -46030614 + B4A SINE B4 1 280 -12 8 1374 222 362 0 0 chr6 103486459 103486633 -46030404 + (CCCA)n Simple_repeat Simple_repeat 3 176 0 8 1374 1126 288 42 29 chr6 103486967 103487458 -46029579 - RMER15 LTR ERVL -12 563 10 8 1374 559 324 112 64 chr6 103488077 103488559 -46028478 - MLT1D LTR MaLR 0 505 1 8 1374 1073 87 0 0 chr6 103489452 103489590 -46027447 + B1_Mm SINE Alu 2 139 -8 8 1374 240 35 0 0 chr6 103489590 103489619 -46027418 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8 1374 4636 74 0 0 chr6 103489729 103490327 -46026710 + L1Md_T LINE L1 5984 6581 -1 8 1374 396 0 0 0 chr6 103490360 103490404 -46026633 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1374 558 327 0 18 chr6 103490406 103490577 -46026460 - B4A SINE B4 -13 279 112 8 1374 231 125 0 0 chr6 103491800 103491840 -46025197 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 8 1374 473 348 38 12 chr6 103495003 103495163 -46021874 + B4A SINE B4 44 207 -85 8 1374 294 320 0 25 chr6 103496038 103496118 -46020919 - ID4_ SINE ID 0 83 6 8 1374 546 16 0 0 chr6 103496828 103496891 -46020146 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1374 720 294 30 57 chr6 103496891 103497190 -46019847 - B4 SINE B4 -1 291 1 8 1374 1961 181 142 13 chr6 103498326 103498790 -46018247 - RLTR28 LTR ERVL 0 524 1 8 1374 236 139 0 0 chr6 103498843 103498879 -46018158 + RLTR28 LTR ERVL 1 36 -488 8 1374 23 0 0 0 chr6 103502128 103502151 -46014886 + AT_rich Low_complexity Low_complexity 1 23 0 1 1374 1322 194 25 235 chr6 103502650 103503135 -46013902 + ORR1C2 LTR MaLR 1 383 -1 2 1374 1342 200 97 14 chr6 103503149 103503509 -46013528 + Lx2B LINE L1 6607 6996 -4 3 1374 231 23 68 23 chr6 103505016 103505060 -46011977 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 1374 1490 252 53 24 chr6 103505066 103505444 -46011593 + MTD LTR MaLR 1 389 -30 5 1374 1285 110 15 20 chr6 103506288 103506483 -46010554 - B2_Mm2 SINE B2 -1 194 1 6 1374 327 273 100 53 chr6 103507272 103507442 -46009595 + MamRep137 DNA TcMar? 73 250 -194 7 1374 441 0 0 0 chr6 103508069 103508118 -46008919 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1374 222 37 0 0 chr6 103508121 103508148 -46008889 + (GA)n Simple_repeat Simple_repeat 2 28 0 9 1374 309 235 0 0 chr6 103510272 103510418 -46006619 + (TG)n Simple_repeat Simple_repeat 1 146 0 1 1374 180 195 48 24 chr6 103511361 103511403 -46005634 + MIR SINE MIR 82 124 -138 1 1374 459 52 0 0 chr6 103512098 103512156 -46004881 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1374 270 271 40 16 chr6 103514121 103514245 -46002792 - L1MA10 LINE L1 -52 6282 6156 1 1374 1122 68 0 26 chr6 103514257 103514408 -46002629 + B1_Mus1 SINE Alu 1 147 -1 1 1374 21 36 0 0 chr6 103514622 103514650 -46002387 + AT_rich Low_complexity Low_complexity 1 28 0 1 1374 802 331 71 51 chr6 103515615 103516125 -46000912 - MER34A LTR ERV1 -5 566 47 1 1374 423 0 0 0 chr6 103516154 103516201 -46000836 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1374 423 309 30 21 chr6 103516202 103516385 -46000652 - B3A SINE B2 -25 191 1 1 1374 381 326 52 56 chr6 103516848 103517134 -45999903 + B4A SINE B4 1 285 -7 1 1374 219 387 56 14 chr6 103517505 103517649 -45999388 + MIR3 SINE MIR 38 187 -21 2 1374 920 296 34 15 chr6 103518116 103518380 -45998657 + B4 SINE B4 2 270 -22 2 1374 429 54 0 0 chr6 103518385 103518441 -45998596 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1374 463 317 31 133 chr6 103520088 103520343 -45996694 + B4A SINE B4 8 236 -56 2 1374 499 212 119 0 chr6 103520345 103520463 -45996574 + B1_Mur2 SINE Alu 9 140 -9 2 1374 423 0 0 0 chr6 103520557 103520604 -45996433 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1374 519 17 0 0 chr6 103520800 103520860 -45996177 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 2 1374 246 360 29 69 chr6 103520913 103521086 -45995951 - MLT1A0 LTR MaLR -176 189 24 2 1374 842 285 4 60 chr6 103521976 103522211 -45994826 - ID_B1 SINE B4 -1 223 2 2 1374 225 0 0 0 chr6 103523619 103523644 -45993393 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1374 6659 43 8 0 chr6 103523775 103524571 -45992466 + RLTR13B4 LTR ERVK 2 803 0 3 1374 36528 52 1 3 chr6 103524974 103532227 -45984810 - L1Md_T LINE L1 0 6585 1 3 1374 233 313 6 51 chr6 103533131 103533289 -45983748 + GA-rich Low_complexity Low_complexity 2 152 0 3 1374 248 350 42 41 chr6 103536178 103536396 -45980641 + MIR SINE MIR 4 216 -46 3 1374 3695 190 60 121 chr6 103537451 103537734 -45979303 + RLTR25A LTR ERVK 111 367 -736 3 1374 3697 54 0 6 chr6 103537734 103538201 -45978836 + L1Md_F3 LINE L1 6107 6570 -14 3 1374 3695 190 60 121 chr6 103538201 103538975 -45978062 + RLTR25A LTR ERVK 368 1103 0 3 1374 1050 110 14 0 chr6 103539098 103539244 -45977793 + B1_Mus1 SINE Alu 1 148 0 3 1374 246 72 68 57 chr6 103539250 103539338 -45977699 + A-rich Low_complexity Low_complexity 2 90 0 3 1374 376 318 144 42 chr6 103540429 103540692 -45976345 - B4A SINE B4 0 292 3 3 1374 327 25 0 0 chr6 103540737 103540777 -45976260 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1374 531 92 0 0 chr6 103540777 103540864 -45976173 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 1374 452 178 0 0 chr6 103540987 103541060 -45975977 - B3A SINE B2 -121 77 5 4 1374 305 350 33 7 chr6 103542961 103543129 -45973908 - MLT1H1 LTR MaLR -226 369 168 4 1374 369 0 0 0 chr6 103543266 103543307 -45973730 + (TAA)n Simple_repeat Simple_repeat 3 43 0 4 1374 21 36 0 0 chr6 103543698 103543726 -45973311 + AT_rich Low_complexity Low_complexity 1 28 0 4 1374 583 324 20 0 chr6 103544823 103544971 -45972066 - RSINE1 SINE B4 -9 156 6 4 1374 300 299 66 33 chr6 103545652 103545773 -45971264 - RMER15 LTR ERVL 0 575 451 4 1374 462 18 0 0 chr6 103545774 103545829 -45971208 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 171 630 301 70 73 chr6 103546848 103547206 -45969831 - ORR1E LTR MaLR 0 359 3 4 1375 522 31 0 0 chr6 103547758 103547822 -45969215 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1375 207 0 0 0 chr6 103547822 103547844 -45969193 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1375 211 200 0 0 chr6 103547848 103547893 -45969144 + CT-rich Low_complexity Low_complexity 1 45 0 5 1375 28 48 0 0 chr6 103548766 103548808 -45968229 + AT_rich Low_complexity Low_complexity 1 42 0 5 1375 255 327 162 52 chr6 103549448 103549677 -45967360 + MIR SINE MIR 9 262 0 5 1375 540 45 0 0 chr6 103551345 103551412 -45965625 + (TTCC)n Simple_repeat Simple_repeat 2 68 0 5 1375 293 353 39 10 chr6 103551412 103551515 -45965522 - PB1D10 SINE Alu -11 106 1 5 1375 316 370 0 0 chr6 103551426 103551518 -45965519 - ID_B1 SINE B4 -54 170 79 5 1375 21 36 0 0 chr6 103551522 103551550 -45965487 + AT_rich Low_complexity Low_complexity 1 28 0 5 1375 723 338 39 7 chr6 103552841 103553121 -45963916 - RMER15 LTR ERVL -1 574 286 5 1375 2788 68 39 10 chr6 103553661 103554045 -45962992 + MTB LTR MaLR 6 400 0 5 1375 319 344 36 5 chr6 103554374 103554570 -45962467 - Lx7 LINE L1 -511 7185 6984 6 1375 1208 324 42 32 chr6 103554647 103555336 -45961701 - Lx8 LINE L1 -611 6862 6167 6 1375 524 337 83 57 chr6 103555379 103555643 -45961394 - B4A SINE B4 -20 272 2 6 1375 4164 48 2 0 chr6 103555884 103556386 -45960651 - L1Md_T LINE L1 -1 6581 6079 6 1375 1076 95 0 7 chr6 103556409 103556558 -45960479 + B1_Mus1 SINE Alu 1 148 0 6 1375 342 343 69 64 chr6 103556981 103557199 -45959838 + MER20 DNA MER1_type 1 219 0 6 1375 255 138 166 0 chr6 103557362 103557507 -45959530 + (CACTT)n Simple_repeat Simple_repeat 3 171 0 6 1375 285 29 0 0 chr6 103558021 103558055 -45958982 + (TTCTCC)n Simple_repeat Simple_repeat 2 35 0 6 1375 1149 106 0 0 chr6 103558059 103558239 -45958798 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1375 388 300 28 28 chr6 103558334 103558588 -45958449 - L1M4 LINE L1 -3555 2591 2338 6 1375 223 197 130 43 chr6 103560616 103560685 -45956352 + MIRc SINE MIR 83 157 -111 7 1375 259 324 53 18 chr6 103560816 103560929 -45956108 - MamSINE1 SINE tRNA -164 126 10 7 1375 366 258 11 43 chr6 103561271 103561364 -45955673 + URR1B DNA MER1_type 1 90 -135 7 1375 1144 130 12 0 chr6 103561365 103561534 -45955503 - Lx3C LINE L1 -458 6518 6348 7 1375 1237 112 236 22 chr6 103561534 103561848 -45955189 + Lx3C LINE L1 6543 6923 -53 7 1375 841 134 0 14 chr6 103561878 103562022 -45955015 + URR1B DNA MER1_type 78 219 -6 7 1375 851 157 0 21 chr6 103562335 103562478 -45954559 + MTC LTR MaLR 3 142 -265 7 1375 1586 150 11 8 chr6 103562579 103562847 -45954190 + MTC LTR MaLR 145 413 -8 7 1375 195 232 0 0 chr6 103563352 103563408 -45953629 + (CAG)n Simple_repeat Simple_repeat 2 57 0 7 1375 464 286 44 27 chr6 103563602 103563785 -45953252 + MER82 DNA MER2_type 11 196 -457 7 1375 403 287 43 60 chr6 103564054 103564239 -45952798 - RLTR18B LTR ERVK -135 377 196 7 1375 530 313 96 51 chr6 103564294 103564587 -45952450 - RLTR18 LTR ERVK -306 310 5 7 1375 378 61 0 0 chr6 103565223 103565272 -45951765 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1375 227 300 10 20 chr6 103565278 103565380 -45951657 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 8 1375 21 36 0 0 chr6 103565437 103565465 -45951572 + AT_rich Low_complexity Low_complexity 1 28 0 8 1375 22 0 0 0 chr6 103565522 103565544 -45951493 + AT_rich Low_complexity Low_complexity 1 22 0 8 1375 408 55 0 0 chr6 103565861 103565916 -45951121 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1375 339 284 192 71 chr6 103567318 103567640 -45949397 + MTEa LTR MaLR 1 361 -18 8 1375 320 335 27 89 chr6 103567650 103567909 -45949128 + MER2 DNA MER2_type 102 344 -1 8 1375 1098 284 43 64 chr6 103568349 103568740 -45948297 - MTD LTR MaLR -14 405 23 8 1375 231 36 0 0 chr6 103568794 103568822 -45948215 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1375 306 0 0 0 chr6 103568902 103568936 -45948101 + (TC)n Simple_repeat Simple_repeat 2 35 0 8 1375 579 96 0 0 chr6 103568936 103569018 -45948019 + (TA)n Simple_repeat Simple_repeat 2 84 0 8 1375 673 306 70 5 chr6 103569019 103569219 -45947818 - B4A SINE B4 -78 214 2 9 1375 198 71 0 0 chr6 103569458 103569486 -45947551 + (CATAT)n Simple_repeat Simple_repeat 3 30 0 9 1375 396 0 0 0 chr6 103570923 103570967 -45946070 + (TC)n Simple_repeat Simple_repeat 2 45 0 9 1375 207 0 0 0 chr6 103570967 103570989 -45946048 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1375 462 167 28 0 chr6 103571401 103571509 -45945528 + (TA)n Simple_repeat Simple_repeat 1 111 0 9 1375 242 240 36 96 chr6 103571698 103571781 -45945256 + ID SINE ID 2 79 -145 9 1375 414 0 0 0 chr6 103573159 103573205 -45943832 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1375 248 0 31 0 chr6 103574247 103574279 -45942758 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 9 1375 22 35 0 0 chr6 103575578 103575607 -45941430 + AT_rich Low_complexity Low_complexity 1 29 0 9 1375 611 284 92 49 chr6 103576299 103576625 -45940412 - L1MA6 LINE L1 -2 6298 5959 9 1375 904 224 19 14 chr6 103576951 103577185 -45939852 + Lx2A1 LINE L1 6791 7007 -1 1 1375 449 291 44 0 chr6 103577403 103577561 -45939476 - L1MA6 LINE L1 -481 5816 5652 9 1375 513 328 75 21 chr6 103577563 103577750 -45939287 - ID_B1 SINE B4 -20 204 8 1 1375 747 281 12 56 chr6 103577756 103578095 -45938942 - L1MA6 LINE L1 -611 5689 5366 9 1375 808 248 180 25 chr6 103578584 103578720 -45938317 + ORR1D1 LTR MaLR 2 143 -231 1 1375 315 0 0 0 chr6 103578720 103578755 -45938282 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1375 225 0 0 0 chr6 103578755 103578779 -45938258 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1375 808 248 180 25 chr6 103578779 103578964 -45938073 + ORR1D1 LTR MaLR 144 373 -1 1 1375 258 346 85 67 chr6 103579243 103579466 -45937571 - LTR82B Low_complexity ERVL -177 653 427 1 1375 241 264 34 22 chr6 103579681 103579770 -45937267 - LTR82B Low_complexity ERVL -740 90 1 1 1375 21 0 0 0 chr6 103579998 103580019 -45937018 + AT_rich Low_complexity Low_complexity 1 21 0 1 1375 29 28 0 0 chr6 103580532 103580568 -45936469 + AT_rich Low_complexity Low_complexity 1 36 0 1 1375 494 223 118 25 chr6 103580885 103581046 -45935991 - L1MC1 LINE L1 -1 6332 6157 1 1375 396 367 86 59 chr6 103581091 103581183 -45935854 - L1MC1 LINE L1 -247 6086 5989 1 1375 2305 52 0 0 chr6 103581183 103581472 -45935565 - L1_Mus1 LINE L1 -5 6562 6274 1 1375 396 367 86 59 chr6 103581472 103581703 -45935334 - L1MC1 LINE L1 -345 5988 5755 1 1375 863 274 141 98 chr6 103581706 103582102 -45934935 + MTD LTR MaLR 5 417 -2 1 1375 496 231 47 13 chr6 103582171 103582320 -45934717 - L1MC1 LINE L1 -616 5717 5564 1 1375 213 43 42 42 chr6 103583647 103583695 -45933342 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 1375 4845 123 32 19 chr6 103585118 103585904 -45931133 + L1_Mus4 LINE L1 5841 6636 0 1 1375 1335 227 171 72 chr6 103585944 103586310 -45930727 - MT2B2 LTR ERVL 0 584 231 1 1375 3043 98 5 2 chr6 103586310 103586738 -45930299 + L1_Mus3 LINE L1 6204 6632 -6 1 1375 1335 227 171 72 chr6 103586738 103586902 -45930135 - MT2B2 LTR ERVL -354 230 2 1 1375 233 314 67 34 chr6 103587726 103587815 -45929222 + ID_B1 SINE B4 1 92 -132 1 1375 343 263 114 41 chr6 103588621 103588744 -45928293 - B1F2 SINE Alu 0 149 18 1 1375 234 150 0 0 chr6 103589629 103589669 -45927368 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1375 261 0 0 0 chr6 103589684 103589713 -45927324 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1375 405 0 0 0 chr6 103589829 103589874 -45927163 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1375 806 232 156 50 chr6 103589980 103590320 -45926717 + MTE2b LTR MaLR 2 377 -2 1 1375 228 111 0 0 chr6 103590805 103590841 -45926196 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1375 206 238 0 0 chr6 103590841 103590883 -45926154 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 1 1375 272 313 130 45 chr6 103590885 103591039 -45925998 - B4A SINE B4 -85 207 41 1 1375 1886 91 0 21 chr6 103591079 103591359 -45925678 - Lx LINE L1 -3 6651 6378 1 1375 504 257 55 70 chr6 103592397 103592598 -45924439 - B3A SINE B2 0 198 1 1 1375 398 257 0 0 chr6 103593451 103593525 -45923512 - B3 SINE B2 -25 191 118 1 1375 971 314 90 27 chr6 103594806 103595106 -45921931 + Charlie1a DNA MER1_type 354 682 -773 1 1375 231 61 0 0 chr6 103595106 103595139 -45921898 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1 1375 971 314 90 27 chr6 103595139 103595316 -45921721 + Charlie1a DNA MER1_type 683 860 -595 1 1375 234 91 0 0 chr6 103595445 103595478 -45921559 + (TTAGGG)n Simple_repeat Simple_repeat 4 36 0 1 1375 331 280 133 29 chr6 103595515 103595688 -45921349 + Charlie1a DNA MER1_type 1242 1432 -23 1 1375 933 305 23 39 chr6 103596737 103597122 -45919915 - MTEa LTR MaLR 0 379 1 1 1375 216 64 20 41 chr6 103597902 103597913 -45919124 + (TG)n Simple_repeat Simple_repeat 1 11 0 1 1375 3491 44 52 17 chr6 103597913 103598372 -45918665 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1375 216 64 20 41 chr6 103598372 103598409 -45918628 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1375 3749 57 0 6 chr6 103598482 103598957 -45918080 + L1Md_F2 LINE L1 6110 6581 -1 1 1375 1759 31 0 5 chr6 103599041 103599288 -45917749 - SYNREP_MM Satellite Satellite -98 245 1 1 1375 191 167 19 0 chr6 103600903 103600930 -45916107 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1375 369 0 0 0 chr6 103600930 103600971 -45916066 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1375 191 167 19 0 chr6 103600971 103600997 -45916040 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 1375 260 298 56 16 chr6 103601239 103601365 -45915672 + L1M5 LINE L1 2576 2706 -3440 1 1375 3624 92 27 2 chr6 103601453 103602008 -45915029 + L1_Mur1 LINE L1 2822 3390 -2496 1 1375 906 266 85 27 chr6 103602384 103602678 -45914359 - Lx6 LINE L1 -1209 6251 5941 1 1375 328 282 0 0 chr6 103602687 103602772 -45914265 + Lx6 LINE L1 6652 6736 -724 1 1375 1285 264 58 102 chr6 103602789 103603199 -45913838 + Lx6 LINE L1 6516 7322 -138 1 1375 1238 85 6 0 chr6 103603199 103603376 -45913661 + (TTC)n Simple_repeat Simple_repeat 3 180 0 1 1375 1285 258 56 107 chr6 103603376 103603410 -45913627 + Lx6 LINE L1 7323 7323 -137 1 1375 882 113 0 0 chr6 103603410 103603543 -45913494 + (TTC)n Simple_repeat Simple_repeat 2 134 0 1 1375 1285 258 56 107 chr6 103603543 103603655 -45913382 + Lx6 LINE L1 7323 7434 -26 1 1375 297 169 0 0 chr6 103603665 103603724 -45913313 + GA-rich Low_complexity Low_complexity 3 61 0 1 1375 610 302 171 29 chr6 103603757 103603996 -45913041 + B4A SINE B4 1 273 -19 1 1375 783 83 0 0 chr6 103604003 103604111 -45912926 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 1375 316 301 11 46 chr6 103604488 103604662 -45912375 + CT-rich Low_complexity Low_complexity 1 168 0 1 1375 339 113 0 0 chr6 103605020 103605073 -45911964 + (TCCC)n Simple_repeat Simple_repeat 3 55 0 1 1375 812 131 17 6 chr6 103605070 103605246 -45911791 + CT-rich Low_complexity Low_complexity 1 178 0 1 1375 802 277 94 25 chr6 103605703 103606104 -45910933 - RMER5 LTR ERV1 -20 514 45 1 1375 1064 163 113 0 chr6 103608415 103608618 -45908419 - URR1A DNA MER1_type 0 226 1 1 1375 799 270 87 24 chr6 103609278 103609661 -45907376 + MTD LTR MaLR 1 404 -15 1 1375 456 292 16 8 chr6 103611690 103611811 -45905226 - RSINE1 SINE B4 0 165 44 1 1375 306 0 0 0 chr6 103611850 103611884 -45905153 + (CCA)n Simple_repeat Simple_repeat 1 34 0 1 1375 279 0 0 0 chr6 103611884 103611915 -45905122 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1375 2753 228 82 17 chr6 103611932 103612588 -45904449 - Lx6 LINE L1 -2 7458 6760 1 1375 1979 227 16 21 chr6 103612715 103613151 -45903886 - Lx6 LINE L1 -706 6754 6321 1 1375 1892 238 81 52 chr6 103613185 103614484 -45902553 - L1_Mur3 LINE L1 -4291 1589 319 1 1375 384 119 0 0 chr6 103616702 103616761 -45900276 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1375 207 139 0 0 chr6 103617138 103617174 -45899863 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 1 1375 28 48 0 0 chr6 103617235 103617277 -45899760 + AT_rich Low_complexity Low_complexity 1 42 0 1 1375 24 0 0 0 chr6 103618127 103618151 -45898886 + AT_rich Low_complexity Low_complexity 1 24 0 1 1375 1096 90 12 6 chr6 103619534 103619701 -45897336 - L1Md_F2 LINE L1 -12 6570 6403 1 1375 445 294 115 25 chr6 103619873 103620279 -45896758 - RLTR12B LTR ERVK -40 319 1 1 1375 25 0 0 0 chr6 103620282 103620307 -45896730 + AT_rich Low_complexity Low_complexity 1 25 0 1 1375 542 221 172 27 chr6 103620932 103621118 -45895919 - B3 SINE B2 -2 214 2 1 1375 330 333 11 21 chr6 103622016 103622111 -45894926 + B4A SINE B4 27 120 -172 1 1375 1962 63 0 0 chr6 103622111 103622364 -45894673 - L1_Mm LINE L1 -446 5437 5185 1 1375 449 34 0 0 chr6 103622368 103622427 -45894610 + L1Md_F2 LINE L1 6512 6570 -12 1 1375 360 0 0 0 chr6 103622584 103622624 -45894413 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1375 1009 182 53 24 chr6 103623672 103623880 -45893157 + B3 SINE B2 1 214 -2 1 1375 330 22 0 0 chr6 103625801 103625847 -45891190 + L1_Mus4 LINE L1 6581 6626 -10 1 1375 953 103 6 24 chr6 103625854 103626023 -45891014 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 1 1375 303 49 0 0 chr6 103626795 103626836 -45890201 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1375 21 57 0 0 chr6 103627136 103627171 -45889866 + AT_rich Low_complexity Low_complexity 1 35 0 1 1375 263 365 71 30 chr6 103627745 103627844 -45889193 + RSINE1 SINE B4 53 155 -10 1 1375 185 65 0 31 chr6 103627844 103627876 -45889161 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1 1375 730 274 75 0 chr6 103628173 103628359 -45888678 + ID_B1 SINE B4 20 219 -5 1 1375 362 194 28 0 chr6 103629994 103630066 -45886971 + B3 SINE B2 11 84 -132 1 1375 1287 79 0 0 chr6 103630288 103630465 -45886572 + (TTTTC)n Simple_repeat Simple_repeat 2 178 0 1 1375 4252 53 6 0 chr6 103630478 103631006 -45886031 + L1Md_F2 LINE L1 6050 6580 -2 1 1375 7238 49 8 0 chr6 103631007 103631888 -45885149 - L1_Mus1 LINE L1 -11 6556 5669 1 1375 695 271 18 32 chr6 103632169 103632386 -45884651 + B3 SINE B2 1 214 -2 1 1375 198 0 0 0 chr6 103632958 103632980 -45884057 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1375 387 60 0 0 chr6 103633503 103633553 -45883484 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1 1375 279 336 32 57 chr6 103634319 103634477 -45882560 + MIR SINE MIR 26 179 -83 1 1375 1646 272 64 17 chr6 103634651 103635185 -45881852 + Lx8 LINE L1 6815 7373 -100 1 1375 5057 201 75 27 chr6 103636441 103637644 -45879393 - RMER12 LTR ERVK -63 1785 1 1 1375 472 381 41 43 chr6 103637999 103638413 -45878624 - MLT1D LTR MaLR 0 505 93 1 1375 741 250 30 8 chr6 103639301 103639589 -45877448 + Lx9 LINE L1 5641 5977 -1667 1 1375 215 279 0 0 chr6 103639649 103639692 -45877345 + polypurine Low_complexity Low_complexity 2 44 0 1 1375 396 291 0 0 chr6 103640466 103640552 -45876485 - B4 SINE B4 0 292 207 1 1375 370 122 0 47 chr6 103640661 103640747 -45876290 + GA-rich Low_complexity Low_complexity 4 85 0 1 1375 540 246 8 118 chr6 103640756 103641070 -45875967 - RMER17C LTR ERVK -328 481 1 1 1375 468 342 49 44 chr6 103641070 103641296 -45875741 - B4 SINE B4 -64 228 2 1 1375 327 25 0 0 chr6 103641935 103641975 -45875062 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1375 381 268 138 0 chr6 103642257 103642395 -45874642 + MER96B DNA hAT 254 410 -7 1 1375 7315 95 11 7 chr6 103643952 103644979 -45872058 + L1_Mus4 LINE L1 5599 6629 -7 1 1375 450 0 0 0 chr6 103645520 103645570 -45871467 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1375 506 340 100 7 chr6 103646132 103646402 -45870635 - MER2 DNA MER2_type -47 298 4 2 1375 618 276 60 10 chr6 103649333 103649534 -45867503 - B3 SINE B2 -5 211 1 2 1375 321 287 15 23 chr6 103649752 103649884 -45867153 - Lx7 LINE L1 -1788 5908 5778 2 1375 217 354 0 0 chr6 103649892 103649988 -45867049 + (TG)n Simple_repeat Simple_repeat 1 96 0 2 1375 783 353 29 55 chr6 103649988 103650261 -45866776 - B4 SINE B4 0 292 27 2 1375 754 295 36 39 chr6 103652604 103652911 -45864126 - Lx9 LINE L1 -549 7095 6790 2 1375 560 271 59 71 chr6 103652904 103653226 -45863811 + Lx9 LINE L1 7298 7615 -29 2 1375 3841 52 13 0 chr6 103653245 103653721 -45863316 + L1Md_F2 LINE L1 6101 6582 0 2 1375 1096 77 0 7 chr6 103654065 103654209 -45862828 + B1_Mus1 SINE Alu 4 146 -2 2 1375 340 289 31 26 chr6 103654247 103654442 -45862595 + L1MA8 LINE L1 6077 6272 -19 2 1375 539 364 23 0 chr6 103655057 103655230 -45861807 + B3A SINE B2 3 179 -19 2 1375 26 0 0 0 chr6 103656239 103656265 -45860772 + AT_rich Low_complexity Low_complexity 1 26 0 2 1375 660 355 6 0 chr6 103656823 103657006 -45860031 + ID_B1 SINE B4 3 186 -38 2 1375 236 360 47 16 chr6 103657591 103657718 -45859319 + MIR SINE MIR 128 258 -4 2 1375 1128 265 97 9 chr6 103657720 103658051 -45858986 - MTD LTR MaLR -2 417 58 2 1375 25 0 0 0 chr6 103658546 103658571 -45858466 + AT_rich Low_complexity Low_complexity 1 25 0 2 1375 248 398 54 54 chr6 103659334 103659557 -45857480 + MER58A DNA MER1_type 1 223 -1 2 1375 834 300 0 25 chr6 103660058 103660301 -45856736 - Lx8 LINE L1 -902 6571 6335 2 1375 324 351 0 0 chr6 103660322 103660416 -45856621 + Tigger5 DNA MER2_type 96 189 -2217 2 1375 273 98 0 0 chr6 103665127 103665168 -45851869 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2 1375 674 262 7 14 chr6 103665569 103665716 -45851321 - B1_Mur3 SINE Alu -2 147 2 2 1375 480 294 73 44 chr6 103665745 103665951 -45851086 + B3A SINE B2 3 214 -2 2 1375 294 81 0 0 chr6 103666514 103666551 -45850486 + U6 snRNA snRNA 2 38 -69 2 1375 246 382 71 35 chr6 103666924 103667065 -45849972 - ID_B1 SINE B4 -73 151 6 2 1375 1714 164 6 3 chr6 103667698 103668015 -45849022 - L1_Mur2 LINE L1 -1651 4226 3909 2 1375 1101 53 184 0 chr6 103668015 103668205 -45848832 - MusHAL1 LINE L1 -642 2070 1846 2 1375 300 150 0 0 chr6 103668185 103668245 -45848792 - MusHAL1 LINE L1 -1260 1452 1393 2 1375 238 230 0 9 chr6 103668397 103668514 -45848523 + CT-rich Low_complexity Low_complexity 1 115 0 2 1375 567 260 21 57 chr6 103668778 103669006 -45848031 - RLTR11B LTR ERVK 0 528 246 2 1375 923 260 24 62 chr6 103669005 103669341 -45847696 - RLTR11B LTR ERVK -130 323 1 2 1375 396 0 0 0 chr6 103669372 103669416 -45847621 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1375 34073 50 0 3 chr6 103669533 103675373 -45841664 + L1Md_T LINE L1 1 5589 -297 2 1375 8407 35 0 2 chr6 103675373 103676477 -45840560 + L1Md_T LINE L1 5590 6585 0 2 1375 260 290 0 14 chr6 103677027 103677097 -45839940 + GA-rich Low_complexity Low_complexity 3 71 0 2 1375 591 339 124 62 chr6 103677161 103677645 -45839392 - MLT1F2 LTR MaLR -35 525 12 2 1376 228 135 0 0 chr6 103678326 103678363 -45838674 + (GGGAGA)n Simple_repeat Simple_repeat 1 37 0 2 1376 295 279 100 55 chr6 103678586 103678850 -45838187 - MLT1A0 LTR MaLR -29 336 25 2 1376 244 0 0 53 chr6 103680006 103680044 -45836993 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 2 1376 725 0 12 0 chr6 103680044 103680129 -45836908 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 2 1376 243 164 0 69 chr6 103681092 103681164 -45835873 + T-rich Low_complexity Low_complexity 5 71 0 2 1376 180 0 0 0 chr6 103681172 103681192 -45835845 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1376 21 36 0 0 chr6 103681704 103681732 -45835305 + AT_rich Low_complexity Low_complexity 1 28 0 2 1376 222 37 0 0 chr6 103684001 103684028 -45833009 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1376 1275 27 0 0 chr6 103684028 103684175 -45832862 - B1_Mus2 SINE Alu 0 147 1 2 1376 211 183 65 0 chr6 103684553 103684646 -45832391 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1376 194 162 40 13 chr6 103684719 103684794 -45832243 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1376 225 0 0 0 chr6 103685300 103685325 -45831712 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1376 273 140 0 0 chr6 103685432 103685489 -45831548 + (T)n Simple_repeat Simple_repeat 1 57 0 2 1376 580 279 5 76 chr6 103685565 103685763 -45831274 - B3A SINE B2 -10 188 5 2 1376 489 252 12 42 chr6 103686199 103686365 -45830672 + Lx8 LINE L1 7000 7160 -313 2 1376 3784 224 56 8 chr6 103686356 103687274 -45829763 + Lx5 LINE L1 6082 7043 -7 2 1376 394 305 7 21 chr6 103687337 103687481 -45829556 + Lx8 LINE L1 7158 7299 -174 2 1376 237 245 0 0 chr6 103687830 103687883 -45829154 + B3 SINE B2 139 191 -25 2 1376 387 92 0 0 chr6 103688510 103688575 -45828462 + (T)n Simple_repeat Simple_repeat 1 65 0 2 1376 1049 186 29 5 chr6 103688725 103688930 -45828107 + B3 SINE B2 2 211 -5 2 1376 630 0 0 0 chr6 103689377 103689447 -45827590 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1376 836 250 9 19 chr6 103690006 103690218 -45826819 - B3 SINE B2 -6 210 1 2 1376 348 24 0 0 chr6 103690599 103690640 -45826397 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1376 1535 216 89 20 chr6 103690803 103691195 -45825842 + MTD LTR MaLR 1 419 0 2 1376 424 381 37 25 chr6 103691400 103691645 -45825392 + MT2A LTR ERVL 169 416 -117 2 1376 762 43 0 0 chr6 103691752 103691846 -45825191 + (TG)n Simple_repeat Simple_repeat 2 95 0 2 1376 248 303 177 16 chr6 103692029 103692153 -45824884 - MER5A DNA MER1_type -31 158 15 2 1376 282 20 39 39 chr6 103693977 103694029 -45823008 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 2 1376 588 153 23 8 chr6 103694173 103694305 -45822732 + CT-rich Low_complexity Low_complexity 3 136 0 2 1376 1261 115 16 0 chr6 103694338 103694520 -45822517 + B2_Mm2 SINE B2 1 185 -10 2 1376 306 0 0 0 chr6 103694587 103694621 -45822416 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1376 578 286 161 0 chr6 103694643 103694842 -45822195 - Lx8 LINE L1 -279 7194 6964 2 1376 191 284 61 102 chr6 103695351 103695449 -45821588 + MIRc SINE MIR 65 158 -110 2 1376 186 133 0 0 chr6 103695610 103695640 -45821397 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 2 1376 396 0 0 0 chr6 103695640 103695684 -45821353 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1376 305 321 77 21 chr6 103695725 103695868 -45821169 - MLT2B4 LTR ERVL -75 481 331 2 1376 262 292 120 66 chr6 103695934 103696117 -45820920 - MLT2B4 LTR ERVL -363 193 1 2 1376 603 0 0 0 chr6 103696367 103696434 -45820603 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1376 1518 47 0 0 chr6 103696751 103697030 -45820007 + (TCTCCC)n Simple_repeat Simple_repeat 1 279 0 2 1376 207 0 0 0 chr6 103697030 103697052 -45819985 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1376 21 82 0 0 chr6 103697256 103697305 -45819732 + AT_rich Low_complexity Low_complexity 1 49 0 2 1376 252 316 56 76 chr6 103697339 103697483 -45819554 + MER117 DNA MER1_type 15 155 -42 2 1376 555 313 177 43 chr6 103697626 103697953 -45819084 - MLT1A1 LTR MaLR -14 394 24 2 1376 613 100 39 0 chr6 103697953 103698083 -45818954 + (TC)n Simple_repeat Simple_repeat 2 136 0 2 1376 594 0 0 0 chr6 103698870 103698936 -45818101 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1376 8069 29 0 0 chr6 103700672 103701886 -45815151 - L1Md_T LINE L1 0 6582 5369 2 1376 231 45 43 22 chr6 103701890 103701936 -45815101 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 2 1376 517 310 47 61 chr6 103702162 103702375 -45814662 + ORR1E LTR MaLR 1 210 -149 2 1376 1193 346 123 56 chr6 103702564 103703533 -45813504 + MTE-int LTR MaLR 104 1137 -443 2 1376 237 316 0 50 chr6 103703557 103703637 -45813400 + RMER21A LTR ERV1 1 76 -871 2 1376 334 175 175 0 chr6 103703637 103703740 -45813297 - Lx2 LINE L1 -855 6142 6022 2 1376 538 182 95 0 chr6 103703738 103703875 -45813162 + Lx LINE L1 6500 6649 -5 2 1376 3114 187 84 160 chr6 103703875 103704874 -45812163 + RMER21A LTR ERV1 25 947 0 2 1376 874 348 31 29 chr6 103704942 103705142 -45811895 + MTE-int LTR MaLR 1158 1359 -221 2 1376 312 48 0 0 chr6 103705142 103705184 -45811853 + (TTG)n Simple_repeat Simple_repeat 2 43 0 2 1376 874 348 31 29 chr6 103705184 103705368 -45811669 + MTE-int LTR MaLR 1360 1542 -38 2 1376 216 150 65 32 chr6 103705604 103705666 -45811371 + T-rich Low_complexity Low_complexity 2 65 0 2 1376 344 268 46 66 chr6 103706248 103706353 -45810684 + HAL1-3A_ME LINE L1 1976 2078 -780 2 1376 369 0 0 0 chr6 103706353 103706394 -45810643 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1376 344 268 46 66 chr6 103706394 103706440 -45810597 + HAL1-3A_ME LINE L1 2079 2123 -735 2 1376 231 36 0 0 chr6 103706443 103706471 -45810566 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 2 1376 265 348 21 43 chr6 103706471 103706564 -45810473 + LTR78 LTR ERV1 321 411 -893 2 1376 21 0 0 0 chr6 103708202 103708223 -45808814 + AT_rich Low_complexity Low_complexity 1 21 0 2 1376 243 270 0 16 chr6 103708871 103708935 -45808102 - MER92B LTR ERV1 -399 237 175 2 1376 283 191 0 73 chr6 103709509 103709577 -45807460 - MLT1B LTR MaLR -9 381 319 2 1376 238 325 12 72 chr6 103709901 103709984 -45807053 + B1F SINE Alu 1 78 -71 2 1376 471 113 0 0 chr6 103710018 103710089 -45806948 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 2 1376 198 167 0 0 chr6 103711219 103711255 -45805782 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1376 484 301 13 27 chr6 103711374 103711524 -45805513 + MER58B DNA MER1_type 190 337 -4 2 1376 208 269 0 0 chr6 103712519 103712571 -45804466 + T-rich Low_complexity Low_complexity 1 52 0 2 1376 360 0 0 0 chr6 103712783 103712823 -45804214 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1376 330 45 0 0 chr6 103712868 103712912 -45804125 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1376 243 420 58 17 chr6 103713188 103713428 -45803609 + MLT1F2 LTR MaLR 311 560 0 3 1376 710 352 28 45 chr6 103714534 103714820 -45802217 + B4A SINE B4 6 286 -6 3 1376 1045 241 135 3 chr6 103715590 103715908 -45801129 + MTD LTR MaLR 12 404 -15 3 1376 266 291 0 0 chr6 103716374 103716453 -45800584 + MIRb SINE MIR 143 221 -47 3 1376 283 70 55 27 chr6 103716474 103716547 -45800490 + T-rich Low_complexity Low_complexity 5 79 0 3 1376 246 258 111 20 chr6 103717236 103717335 -45799702 - MIR SINE MIR -42 220 113 3 1376 1962 201 58 0 chr6 103717463 103717861 -45799176 + MTC LTR MaLR 1 421 0 3 1376 1380 299 28 34 chr6 103718051 103718615 -45798422 + Lx8 LINE L1 6296 6856 -617 3 1376 762 307 81 52 chr6 103718684 103719203 -45797834 + L1_Rod LINE L1 5310 5843 -4 3 1376 5330 162 69 35 chr6 103719301 103719602 -45797435 + RLTR25A LTR ERVK 1 297 -806 3 1376 1172 75 0 0 chr6 103719602 103719749 -45797288 - B1_Mus2 SINE Alu 0 147 1 3 1376 5330 162 69 35 chr6 103719749 103720513 -45796524 + RLTR25A LTR ERVK 298 1103 0 3 1376 462 292 26 46 chr6 103720610 103720761 -45796276 - B1F1 SINE Alu -1 148 1 3 1376 312 91 0 0 chr6 103720784 103720828 -45796209 + (T)n Simple_repeat Simple_repeat 1 44 0 3 1376 7300 61 6 3 chr6 103720892 103722113 -45794924 - L1Md_F2 LINE L1 -1 6581 5356 3 1376 3442 72 47 2 chr6 103722112 103722628 -45794409 + L1_Mm LINE L1 2922 3460 -2423 3 1376 343 224 176 9 chr6 103722965 103723073 -45793964 + MER3 DNA MER1_type 38 163 -46 3 1376 24 77 0 0 chr6 103724021 103724073 -45792964 + AT_rich Low_complexity Low_complexity 1 52 0 3 1376 10241 2 0 0 chr6 103724925 103726813 -45790224 - L1Md_A LINE L1 -1 6581 4694 3 1376 385 20 0 0 chr6 103726804 103726853 -45790184 + L1Md_A LINE L1 4622 4670 -1213 3 1376 941 146 0 43 chr6 103726928 103727114 -45789923 - L1Md_F3 LINE L1 0 6584 6407 3 1376 518 304 11 33 chr6 103727237 103727417 -45789620 - B4A SINE B4 0 292 117 3 1376 414 0 0 0 chr6 103727461 103727507 -45789530 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1376 304 304 0 37 chr6 103727583 103727665 -45789372 + ID SINE ID 4 82 -142 3 1376 428 297 71 25 chr6 103728373 103728570 -45788467 - ID_B1 SINE B4 -17 207 2 3 1376 485 299 31 31 chr6 103728769 103728928 -45788109 - B4A SINE B4 -120 172 14 3 1376 1143 249 81 43 chr6 103730062 103730432 -45786605 - RLTR11A LTR ERVK -38 490 107 3 1376 243 218 55 0 chr6 103730451 103730506 -45786531 - RLTR11A LTR ERVK -470 58 1 3 1376 519 258 63 76 chr6 103730512 103730715 -45786322 + MTEa LTR MaLR 164 379 0 3 1376 236 298 12 12 chr6 103731659 103731744 -45785293 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 3 1376 1621 42 0 0 chr6 103731765 103731955 -45785082 - B2_Mm1a SINE B2 -2 191 2 3 1376 672 204 0 13 chr6 103732432 103732581 -45784456 - Lx6 LINE L1 -7 7453 7307 3 1376 513 32 0 0 chr6 103733675 103733738 -45783299 + (TATG)n Simple_repeat Simple_repeat 4 66 0 3 1376 251 284 0 0 chr6 103734069 103734150 -45782887 - L1_Mur3 LINE L1 -1090 4790 4710 3 1376 2524 263 79 62 chr6 103734169 103734766 -45782271 + Lx6 LINE L1 6528 7150 -310 3 1376 1336 30 6 0 chr6 103734766 103734932 -45782105 - L1Md_A LINE L1 -1 6581 6415 3 1376 2524 263 79 62 chr6 103734932 103735237 -45781800 + Lx6 LINE L1 7151 7445 -15 3 1376 217 250 0 35 chr6 103735329 103735387 -45781650 - PB1D10 SINE Alu -35 82 27 3 1376 678 256 14 89 chr6 103736009 103736223 -45780814 - B3A SINE B2 0 198 1 3 1376 268 290 22 30 chr6 103736776 103736911 -45780126 + CT-rich Low_complexity Low_complexity 4 137 0 3 1376 725 268 180 21 chr6 103737114 103737442 -45779595 - RLTR45 LTR ERVK 0 482 103 3 1376 1161 110 3 0 chr6 103737718 103737901 -45779136 + B2_Mm2 SINE B2 1 187 -6 3 1376 380 275 82 19 chr6 103738272 103738528 -45778509 - L1M2 LINE L1 -775 5525 5254 3 1376 294 287 107 0 chr6 103738549 103738699 -45778338 - L1M2 LINE L1 -2366 3777 3612 3 1376 3199 44 3 5 chr6 103739180 103739572 -45777465 - L1Md_F3 LINE L1 -15 6569 6179 3 1376 297 300 0 0 chr6 103740206 103740296 -45776741 - PB1D10 SINE Alu -17 100 11 3 1376 196 233 120 27 chr6 103740782 103740857 -45776180 - MIR3 SINE MIR -25 183 102 3 1376 2427 304 76 23 chr6 103741711 103742344 -45774693 - Lx8 LINE L1 -160 7313 6666 3 1376 1056 60 0 43 chr6 103742344 103742484 -45774553 + B1_Mm SINE Alu 1 134 -13 3 1376 255 31 0 0 chr6 103742484 103742516 -45774521 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1376 2427 304 76 23 chr6 103742516 103742948 -45774089 - Lx8 LINE L1 -808 6665 6192 3 1376 524 298 81 46 chr6 103742980 103743170 -45773867 + Lx8 LINE L1 5509 5715 -165 3 1376 2956 103 0 0 chr6 103743170 103743566 -45773471 + MTA_Mm LTR MaLR 1 396 0 3 1376 524 302 70 45 chr6 103743566 103743749 -45773288 + Lx8 LINE L1 5716 5896 -1577 3 1376 183 239 0 0 chr6 103744173 103744219 -45772818 + (CATA)n Simple_repeat Simple_repeat 3 48 0 3 1376 397 258 65 59 chr6 103745730 103745899 -45771138 + MER96B DNA hAT 1 170 -247 3 1376 855 306 84 35 chr6 103746296 103747149 -45769888 - Lx8 LINE L1 -67 5780 4886 3 1376 569 279 114 39 chr6 103747230 103747484 -45769553 - Lx9 LINE L1 -712 6932 6660 3 1376 696 24 0 0 chr6 103747669 103747751 -45769286 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1376 1969 277 125 14 chr6 103747930 103748688 -45768349 + Lx8 LINE L1 6182 7023 -450 3 1376 852 307 156 28 chr6 103748933 103749681 -45767356 - L1_Mur3 LINE L1 -1049 4831 3991 3 1376 3637 182 31 13 chr6 103749681 103750359 -45766678 + RLTR17 LTR ERVK 3 692 0 3 1376 852 296 144 24 chr6 103750359 103750695 -45766342 - L1_Mur3 LINE L1 -1890 3990 3643 3 1376 535 299 115 29 chr6 103750697 103751315 -45765722 + L1M4 LINE L1 2920 3618 -2528 3 1376 22 0 0 0 chr6 103751417 103751439 -45765598 + AT_rich Low_complexity Low_complexity 1 22 0 3 1376 21 36 0 0 chr6 103751544 103751572 -45765465 + AT_rich Low_complexity Low_complexity 1 28 0 3 1376 267 369 90 65 chr6 103752427 103752627 -45764410 - B3A SINE B2 -3 213 9 3 1376 422 281 35 53 chr6 103753173 103753342 -45763695 + Lx8 LINE L1 6954 7119 -354 3 1376 575 354 6 0 chr6 103754344 103754502 -45762535 + B4 SINE B4 104 262 -30 3 1376 2208 117 31 0 chr6 103754558 103754875 -45762162 - ORR1A2 LTR MaLR 0 327 1 3 1376 338 332 66 55 chr6 103755471 103755742 -45761295 - B4A SINE B4 -18 274 1 3 1376 772 97 0 16 chr6 103755746 103755872 -45761165 + (TCC)n Simple_repeat Simple_repeat 2 125 0 3 1376 3279 204 26 20 chr6 103756198 103756857 -45760180 - Lx5 LINE L1 -3 7047 6385 3 1376 2042 219 31 12 chr6 103756862 103757351 -45759686 - Lx5 LINE L1 -782 6268 5771 3 1376 937 209 0 30 chr6 103758677 103758874 -45758163 - ORR1B2 LTR MaLR 0 367 177 3 1376 585 0 0 0 chr6 103759045 103759110 -45757927 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 3 1376 226 176 39 0 chr6 103759157 103759208 -45757829 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1376 485 32 16 0 chr6 103759242 103759305 -45757732 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1376 349 332 54 54 chr6 103759308 103759585 -45757452 - B4A SINE B4 -14 278 2 3 1376 364 362 30 6 chr6 103762064 103762228 -45754809 + LTR33 LTR ERVL 47 214 -301 3 1376 597 169 32 54 chr6 103762534 103762666 -45754371 - RMER10A LTR ERVL -250 148 1 3 1376 351 361 132 0 chr6 103762828 103762999 -45754038 - MLT1G LTR MaLR -373 222 33 3 1376 929 226 223 42 chr6 103763313 103763650 -45753387 - RMER10B LTR ERVL 0 398 1 3 1376 1499 128 26 198 chr6 103763909 103764148 -45752889 - RMER17C LTR ERVK 0 410 196 3 1376 786 22 0 0 chr6 103764148 103764240 -45752797 + (GAA)n Simple_repeat Simple_repeat 3 94 0 3 1376 1499 128 26 198 chr6 103764240 103764495 -45752542 - RMER17C LTR ERVK -215 195 1 3 1376 2020 127 9 3 chr6 103764517 103764840 -45752197 + RMER6D LTR ERVK 1 325 -395 3 1376 454 265 73 40 chr6 103765172 103765349 -45751688 + RLTR41 LTR ERV1 264 446 0 3 1376 1752 195 82 6 chr6 103765366 103765381 -45751656 + RMER6D LTR ERVK 355 369 -351 3 1376 627 81 0 0 chr6 103765381 103765480 -45751557 + (TG)n Simple_repeat Simple_repeat 1 99 0 3 1376 1752 195 82 6 chr6 103765480 103765804 -45751233 + RMER6D LTR ERVK 370 720 0 3 1376 2210 153 80 39 chr6 103766408 103766871 -45750166 + RLTR45 LTR ERVK 1 482 0 3 1376 251 264 123 65 chr6 103766905 103767043 -45749994 - LTR50 LTR ERVL -46 749 604 3 1376 311 263 79 0 chr6 103768415 103768493 -45748544 + PB1D10 SINE Alu 13 96 -24 3 1376 284 331 49 88 chr6 103768571 103768776 -45748261 - MLT1F2 LTR MaLR -52 508 312 3 1376 1965 219 90 29 chr6 103768828 103769062 -45747975 + RLTR18 LTR ERVK 1 231 -385 3 1376 1436 178 57 10 chr6 103769062 103769358 -45747679 - Lx2 LINE L1 -2 6995 6686 3 1376 1965 219 90 29 chr6 103769358 103769579 -45747458 + RLTR18 LTR ERVK 232 484 -132 3 1376 1290 179 183 13 chr6 103769930 103770242 -45746795 - ORR1B2 LTR MaLR 0 367 3 3 1376 6492 30 0 0 chr6 103770534 103771291 -45745746 - L1Md_A LINE L1 0 6582 5826 3 1376 2629 190 4 16 chr6 103771324 103771827 -45745210 - RLTR19 LTR ERVK 0 499 3 3 1376 362 216 61 20 chr6 103772293 103772392 -45744645 + MLT1A1 LTR MaLR 294 396 -12 3 1376 261 333 22 22 chr6 103774032 103774124 -45742913 + MER117 DNA MER1_type 79 170 -27 3 1376 351 272 18 80 chr6 103774410 103774522 -45742515 - PB1D9 SINE Alu -5 115 11 3 1376 234 298 19 9 chr6 103774993 103775021 -45742016 + polypyrimidine Low_complexity Low_complexity 77 106 0 3 1376 3379 180 52 19 chr6 103775021 103775718 -45741319 - RMER6D LTR ERVK 0 720 1 3 1376 234 298 19 9 chr6 103775718 103775794 -45741243 + CT-rich Low_complexity Low_complexity 2 76 0 3 1376 190 179 25 25 chr6 103775825 103775905 -45741132 + (TCTCTG)n Simple_repeat Simple_repeat 3 82 0 3 1376 232 309 67 97 chr6 103776622 103776787 -45740250 - MLT1C LTR MaLR 0 467 308 3 1376 1107 62 0 40 chr6 103777459 103777611 -45739426 - B1_Mus1 SINE Alu -1 147 2 3 1376 21 36 0 0 chr6 103778062 103778090 -45738947 + AT_rich Low_complexity Low_complexity 1 28 0 3 1376 1052 78 0 7 chr6 103778746 103778888 -45738149 + B1_Mus1 SINE Alu 3 143 -5 3 1376 1855 169 26 17 chr6 103779012 103779362 -45737675 + ORR1B1 LTR MaLR 41 393 -1 3 1376 529 120 9 9 chr6 103781109 103781218 -45735819 - L1_Mus4 LINE L1 -1 6635 6527 4 1376 2408 43 66 24 chr6 103781218 103781357 -45735680 - ORR1A1 LTR MaLR 0 346 215 4 1376 3365 27 17 2 chr6 103781357 103781762 -45735275 + IAPLTR2a LTR ERVK 1 411 0 4 1376 2408 43 66 24 chr6 103781762 103781954 -45735083 - ORR1A1 LTR MaLR -132 214 1 4 1376 410 151 0 0 chr6 103781954 103782027 -45735010 - L1_Mus3 LINE L1 -107 6531 6459 4 1376 228 214 0 35 chr6 103782508 103782566 -45734471 - U7 snRNA snRNA -2 61 6 4 1376 21 36 0 0 chr6 103782667 103782695 -45734342 + AT_rich Low_complexity Low_complexity 1 28 0 4 1376 307 338 14 40 chr6 103783228 103783376 -45733661 - RSINE1 SINE B4 -20 145 2 4 1376 195 42 0 0 chr6 103784028 103784052 -45732985 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1376 514 288 23 0 chr6 103784062 103784194 -45732843 - ID_B1 SINE B4 -16 208 74 4 1376 269 330 68 0 chr6 103784187 103784393 -45732644 + Charlie5 DNA MER1_type 2395 2614 -10 4 1376 364 289 72 23 chr6 103784748 103784953 -45732084 - MIRb SINE MIR -31 237 12 4 1376 285 183 0 0 chr6 103785671 103785731 -45731306 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1376 22 0 0 0 chr6 103785731 103785753 -45731284 + AT_rich Low_complexity Low_complexity 1 22 0 4 1376 850 271 115 31 chr6 103786736 103787093 -45729944 - MTD LTR MaLR -14 407 11 4 1376 613 330 52 93 chr6 103787303 103787594 -45729443 - B4A SINE B4 0 292 14 4 1376 286 351 80 82 chr6 103788152 103788593 -45728444 - MLT1G LTR MaLR 0 579 126 4 1376 921 284 87 20 chr6 103789506 103789804 -45727233 + MER57E1 LTR ERV1 1 318 -54 4 1376 225 0 0 0 chr6 103789811 103789836 -45727201 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1376 336 77 0 0 chr6 103789836 103789888 -45727149 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1376 279 0 0 0 chr6 103789888 103789919 -45727118 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 1376 741 180 13 45 chr6 103789924 103790081 -45726956 - B2_Mm2 SINE B2 -43 152 1 4 1376 189 182 214 18 chr6 103790481 103790537 -45726500 + MIR SINE MIR 114 180 -82 4 1376 288 314 26 24 chr6 103791068 103791222 -45725815 - MLT1A0 LTR MaLR -32 358 204 4 1376 690 62 0 0 chr6 103791234 103791330 -45725707 + (TG)n Simple_repeat Simple_repeat 1 96 0 4 1376 447 132 0 0 chr6 103791330 103791421 -45725616 + (CAGA)n Simple_repeat Simple_repeat 2 92 0 4 1376 205 128 39 78 chr6 103791426 103791477 -45725560 + (CAGAGA)n Simple_repeat Simple_repeat 4 52 0 4 1376 492 291 105 14 chr6 103791477 103791658 -45725379 - MLT1A0 LTR MaLR -210 198 5 4 1376 385 311 8 16 chr6 103793333 103793454 -45723583 - B4A SINE B4 -8 284 165 4 1376 356 293 9 75 chr6 103793574 103793681 -45723356 - B4A SINE B4 -192 100 1 4 1376 428 284 73 56 chr6 103794767 103794946 -45722091 - MER3 DNA MER1_type -8 201 20 4 1376 421 275 113 74 chr6 103794979 103795262 -45721775 + MER33 DNA MER1_type 31 324 0 4 1376 3182 76 2 0 chr6 103795383 103795789 -45721248 + MTB_Mm LTR MaLR 1 407 0 4 1376 298 350 72 48 chr6 103795831 103796038 -45720999 - LTR65 LTR ERV1 -176 493 282 4 1376 198 0 0 0 chr6 103796038 103796060 -45720977 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1376 195 224 253 38 chr6 103796269 103796348 -45720689 + L2c LINE L2 3041 3136 -251 4 1376 1116 84 0 0 chr6 103796465 103796619 -45720418 + ORR1A2 LTR MaLR 1 154 -173 4 1376 1597 242 53 99 chr6 103796630 103797739 -45719298 + RMER17B LTR ERVK 2 943 -15 4 1376 1049 170 50 30 chr6 103797711 103797911 -45719126 + ORR1A3 LTR MaLR 115 318 -8 4 1376 1595 137 106 153 chr6 103797906 103798140 -45718897 + ORR1A3-int LTR MaLR 1466 1684 -279 4 1376 1132 59 0 0 chr6 103798140 103798275 -45718762 + B1_Mus1 SINE Alu 5 139 -9 4 1376 1595 137 106 165 chr6 103798275 103798524 -45718513 + ORR1A3-int LTR MaLR 1685 1855 -108 4 1376 2196 65 0 0 chr6 103798847 103799141 -45717896 - L1Md_F2 LINE L1 -438 6144 5851 4 1376 3599 36 14 0 chr6 103799141 103799581 -45717456 + L1Md_F2 LINE L1 6136 6581 -1 4 1376 306 263 39 41 chr6 103799584 103799692 -45717345 + PB1D9 SINE Alu 1 119 -1 4 1376 235 300 77 11 chr6 103799842 103799933 -45717104 - MIRb SINE MIR -36 232 136 4 1376 937 208 311 0 chr6 103801785 103802045 -45714992 + ORR1A3 LTR MaLR 2 342 -52 4 1376 387 0 0 0 chr6 103802424 103802467 -45714570 + (CATTT)n Simple_repeat Simple_repeat 1 43 0 4 1376 677 256 25 78 chr6 103802484 103802577 -45714460 - MTC-int LTR MaLR -1029 229 152 4 1376 1376 57 0 0 chr6 103802577 103802754 -45714283 - L1Md_T LINE L1 0 6582 6406 4 1376 677 256 25 78 chr6 103802754 103802902 -45714135 - MTC-int LTR MaLR -1107 151 1 4 1376 1461 223 134 6 chr6 103802905 103803270 -45713767 - MTC LTR MaLR -8 413 2 4 1376 1473 206 63 13 chr6 103803996 103804311 -45712726 - RMER6D LTR ERVK -61 659 329 4 1376 812 231 92 19 chr6 103804304 103804325 -45712712 - RMER6C LTR ERVK -251 469 449 4 1376 1230 90 0 0 chr6 103804325 103804503 -45712534 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 4 1376 834 231 92 19 chr6 103804503 103804798 -45712239 - RMER6C LTR ERVK -272 448 126 4 1376 7039 134 9 15 chr6 103804826 103806769 -45710268 - L1_Mus4 LINE L1 -5 6631 4700 4 1376 3125 161 25 26 chr6 103806769 103807381 -45709656 + RMER6A LTR ERVK 139 749 -7 4 1376 1249 166 232 105 chr6 103807401 103807479 -45709558 + MT2A LTR ERVL 1 76 -457 4 1376 435 19 0 0 chr6 103807479 103807531 -45709506 + (TAA)n Simple_repeat Simple_repeat 3 54 0 4 1376 1249 166 232 105 chr6 103807531 103807862 -45709175 + MT2A LTR ERVL 77 462 -71 4 1376 180 0 0 0 chr6 103807862 103807882 -45709155 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1376 751 237 155 95 chr6 103807882 103807917 -45709120 + MT2A LTR ERVL 544 600 -1 4 21 423 0 0 0 chr6 103809003 103809050 -45707987 + (TTA)n Simple_repeat Simple_repeat 2 48 0 4 1377 45 34 0 0 chr6 103809842 103809901 -45707136 + AT_rich Low_complexity Low_complexity 1 59 0 4 1377 2169 289 17 27 chr6 103810292 103811210 -45705827 + RMER16-int LTR ERVK 3981 4889 -517 4 1377 24 0 0 0 chr6 103811434 103811458 -45705579 + AT_rich Low_complexity Low_complexity 1 24 0 4 1377 264 342 17 112 chr6 103812826 103813004 -45704033 + MER20 DNA MER1_type 43 203 -16 4 1377 516 32 0 0 chr6 103813047 103813109 -45703928 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1377 240 35 0 0 chr6 103813948 103813977 -45703060 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1377 465 231 19 9 chr6 103814456 103814561 -45702476 + MTC LTR MaLR 283 388 -33 4 1377 183 80 0 0 chr6 103814569 103814594 -45702443 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 4 1377 3254 212 239 10 chr6 103814594 103815736 -45701301 - Lx4B LINE L1 -21 7037 5618 4 1377 399 192 0 3 chr6 103815744 103815827 -45701210 - L1_Mur2 LINE L1 -950 4933 4847 4 1377 548 231 9 0 chr6 103816000 103816108 -45700929 - B1_Mur2 SINE Alu -5 144 36 4 1377 738 169 114 0 chr6 103816109 103816294 -45700743 + Lx4B LINE L1 5906 6112 -946 4 1377 643 204 0 20 chr6 103816289 103816439 -45700598 + L1_Mur2 LINE L1 5306 5452 -425 4 1377 4203 74 13 0 chr6 103817113 103817670 -45699367 - L1_Mus1 LINE L1 0 6567 6004 4 1377 451 243 80 16 chr6 103817716 103817904 -45699133 + Zaphod DNA Tip100 2749 2948 -1083 4 1377 31645 105 18 21 chr6 103817973 103824349 -45692688 - L1Md_F2 LINE L1 -3 6579 217 4 1377 429 363 93 45 chr6 103824350 103824641 -45692396 + MER82 DNA MER2_type 348 652 -1 4 1377 217 333 16 0 chr6 103825343 103825406 -45691631 + B4 SINE B4 1 64 -228 4 1377 4339 74 2 2 chr6 103825503 103826070 -45690967 + L1_Mus2 LINE L1 5999 6565 -1 4 1377 378 0 0 0 chr6 103826291 103826333 -45690704 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 4 1377 37 0 0 0 chr6 103827605 103827642 -45689395 + AT_rich Low_complexity Low_complexity 1 37 0 4 1377 407 280 128 9 chr6 103828424 103828578 -45688459 + ORR1E LTR MaLR 106 303 -76 4 1377 659 268 178 99 chr6 103829168 103829613 -45687424 + Lx6 LINE L1 6354 7052 -408 4 1377 3965 179 102 78 chr6 103829612 103829911 -45687126 + Lx7 LINE L1 2863 3226 -2654 4 1377 204 40 0 0 chr6 103829911 103829936 -45687101 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 1377 231 88 0 0 chr6 103829936 103829969 -45687068 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1377 3965 179 102 78 chr6 103829969 103830941 -45686096 + Lx7 LINE L1 3227 4165 -1715 4 1377 1473 179 45 3 chr6 103830940 103831276 -45685761 + Lx7 LINE L1 5216 5565 -315 4 1377 2448 257 43 27 chr6 103831277 103831375 -45685662 + Lx7 LINE L1 5677 5778 -1918 4 1377 1652 174 20 0 chr6 103831375 103831673 -45685364 + Lx2A1 LINE L1 6703 7006 -2 4 1377 2448 257 43 27 chr6 103831673 103832355 -45684682 + Lx7 LINE L1 5779 6469 -1227 4 1377 1097 295 47 14 chr6 103832350 103832780 -45684257 + Lx7 LINE L1 6906 7349 -347 4 1377 27 73 0 0 chr6 103832795 103832850 -45684187 + AT_rich Low_complexity Low_complexity 1 55 0 4 1377 598 204 49 22 chr6 103832850 103833035 -45684002 + Lx7 LINE L1 7359 7548 -148 4 1377 357 331 81 50 chr6 103833172 103833455 -45683582 + B4A SINE B4 1 292 0 4 1377 258 81 0 0 chr6 103833494 103833531 -45683506 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1377 231 125 0 0 chr6 103833536 103833576 -45683461 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1377 976 67 0 15 chr6 103833626 103833762 -45683275 - B1_Mus2 SINE Alu 0 147 14 4 1377 191 371 44 29 chr6 103834362 103834498 -45682539 - MIRb SINE MIR -49 219 82 4 1377 405 0 0 0 chr6 103834540 103834585 -45682452 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1377 569 148 7 0 chr6 103834585 103834727 -45682310 + GA-rich Low_complexity Low_complexity 2 144 0 4 1377 433 208 51 25 chr6 103834728 103834886 -45682151 + (CAGAGA)n Simple_repeat Simple_repeat 6 167 0 4 1377 180 152 0 0 chr6 103835757 103835790 -45681247 + CT-rich Low_complexity Low_complexity 1 33 0 4 1377 277 43 21 21 chr6 103837051 103837099 -45679938 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 4 1377 606 267 77 0 chr6 103837346 103837541 -45679496 + B3 SINE B2 1 210 -6 4 1377 279 335 114 18 chr6 103837609 103837776 -45679261 + MER47B DNA MER2_type 37 219 -199 4 1377 330 327 9 0 chr6 103837795 103837908 -45679129 + MER47B DNA MER2_type 305 418 0 4 1377 212 265 0 0 chr6 103838306 103838355 -45678682 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 4 1377 261 0 0 0 chr6 103838605 103838634 -45678403 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1377 725 69 17 0 chr6 103839022 103839138 -45677899 + (TTCTC)n Simple_repeat Simple_repeat 5 122 0 4 1377 1068 116 0 0 chr6 103839152 103839299 -45677738 - B1_Mus1 SINE Alu 0 148 2 4 1377 207 100 0 0 chr6 103839468 103839498 -45677539 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 4 1377 398 294 0 0 chr6 103839499 103839591 -45677446 - B1_Mur1 SINE Alu -14 135 44 4 1377 413 321 48 96 chr6 103840365 103840616 -45676421 - ORR1E LTR MaLR -120 239 1 4 1377 2955 144 14 8 chr6 103840689 103841373 -45675664 - Lx5 LINE L1 -960 6090 5398 4 1377 1040 233 57 23 chr6 103841374 103841637 -45675400 + Lx5 LINE L1 6779 7050 0 5 1377 180 316 13 0 chr6 103842541 103842620 -45674417 - L3 LINE CR1 -1746 2743 2664 5 1377 21 71 0 0 chr6 103842868 103842910 -45674127 + AT_rich Low_complexity Low_complexity 1 42 0 5 1377 378 0 0 0 chr6 103845539 103845581 -45671456 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1377 525 304 27 46 chr6 103846305 103846564 -45670473 + Lx9 LINE L1 7274 7527 -117 5 1377 247 360 87 20 chr6 103847290 103847440 -45669597 + MIRb SINE MIR 14 173 -95 5 1377 271 351 93 0 chr6 103847823 103847974 -45669063 + RMER15 LTR ERVL 409 573 -2 5 1377 6325 63 4 18 chr6 103848062 103848929 -45668108 - RLTR13A2 LTR ERVK 0 958 1 5 1377 1119 75 7 0 chr6 103849014 103849160 -45667877 + B1_Mus1 SINE Alu 2 148 0 5 1377 781 104 7 15 chr6 103849160 103849296 -45667741 + (GAAAA)n Simple_repeat Simple_repeat 4 138 0 5 1377 534 143 21 0 chr6 103849480 103849486 -45667551 + (TCTA)n Simple_repeat Simple_repeat 1 6 0 5 1377 705 24 0 0 chr6 103849486 103849569 -45667468 + (TTTC)n Simple_repeat Simple_repeat 3 85 0 5 1377 534 143 21 0 chr6 103849569 103849702 -45667335 + (TCTA)n Simple_repeat Simple_repeat 1 136 0 5 1377 667 137 0 16 chr6 103849702 103849828 -45667209 + CT-rich Low_complexity Low_complexity 1 124 0 5 1377 474 291 12 85 chr6 103849848 103850013 -45667024 - RSINE1 SINE B4 0 165 13 5 1377 3166 156 51 26 chr6 103850698 103851324 -45665713 - RLTR26 LTR ERVK 0 642 1 5 1377 6705 182 37 22 chr6 103852184 103853935 -45663102 - Lx5 LINE L1 -11 7039 5255 5 1377 4913 221 339 9 chr6 103853938 103855766 -45661271 - Lx5 LINE L1 -1138 4742 2067 5 1377 279 93 0 0 chr6 103855766 103855809 -45661228 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1377 4913 221 339 9 chr6 103855809 103856586 -45660451 - Lx5 LINE L1 -3814 2066 1270 5 1377 333 0 0 0 chr6 103856586 103856623 -45660414 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1377 4913 209 328 2 chr6 103856623 103856905 -45660132 - Lx5 LINE L1 -4611 1269 902 5 1377 812 127 6 0 chr6 103857114 103857279 -45659758 + (TC)n Simple_repeat Simple_repeat 1 166 0 5 1377 2106 322 100 32 chr6 103857322 103858456 -45658581 + Lx8 LINE L1 6233 7443 -30 5 1377 22 35 0 0 chr6 103859189 103859218 -45657819 + AT_rich Low_complexity Low_complexity 1 29 0 5 1377 372 242 41 38 chr6 103859243 103859430 -45657607 + L1MB3 LINE L1 5221 5406 -2589 5 1377 441 282 20 35 chr6 103859655 103859857 -45657180 + L1MB3 LINE L1 5404 5602 -581 5 1377 252 184 0 0 chr6 103859887 103859936 -45657101 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1377 233 331 21 28 chr6 103860175 103860318 -45656719 + L1MB3 LINE L1 5960 6101 -82 5 1377 3418 49 16 0 chr6 103860581 103861011 -45656026 - L1Md_F2 LINE L1 -525 6057 5621 5 1377 3103 75 0 7 chr6 103861010 103861413 -45655624 + L1Md_F2 LINE L1 6053 6452 -130 5 1377 180 0 0 0 chr6 103862495 103862515 -45654522 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1377 2367 82 28 39 chr6 103864441 103864796 -45652241 + L1Md_F2 LINE L1 6218 6568 -14 5 1377 23 0 0 0 chr6 103864880 103864903 -45652134 + AT_rich Low_complexity Low_complexity 1 23 0 5 1377 538 211 23 9 chr6 103864918 103865049 -45651988 + B2_Mm2 SINE B2 27 165 -51 5 1377 33321 87 15 3 chr6 103865198 103871204 -45645833 - L1Md_F2 LINE L1 -12 6570 500 5 1377 1101 115 0 0 chr6 103873143 103873300 -45643737 - L1_Mus1 LINE L1 0 6567 6411 5 1377 396 0 0 0 chr6 103873386 103873430 -45643607 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 5 1377 235 283 104 66 chr6 103873433 103873539 -45643498 + B3A SINE B2 86 195 -3 5 1377 288 0 0 0 chr6 103874985 103875017 -45642020 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1377 296 344 0 0 chr6 103875121 103875217 -45641820 + (TG)n Simple_repeat Simple_repeat 2 97 0 5 1377 3362 53 0 9 chr6 103875394 103875831 -45641206 + L1Md_F2 LINE L1 6148 6580 -2 5 1377 1554 125 149 0 chr6 103875831 103876112 -45640925 + Lx LINE L1 6312 6634 -20 5 1377 293 330 10 0 chr6 103876201 103876301 -45640736 + MLT1B LTR MaLR 285 385 -5 5 1377 26 50 0 0 chr6 103876403 103876443 -45640594 + AT_rich Low_complexity Low_complexity 1 40 0 5 1377 239 93 23 0 chr6 103876466 103876509 -45640528 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1377 392 332 154 58 chr6 103876547 103876806 -45640231 - B4 SINE B4 -8 284 1 5 1377 29 28 0 0 chr6 103876806 103876842 -45640195 + AT_rich Low_complexity Low_complexity 1 36 0 5 1377 23 0 0 0 chr6 103876869 103876892 -45640145 + AT_rich Low_complexity Low_complexity 1 23 0 5 1377 654 248 19 46 chr6 103877683 103877899 -45639138 - B3 SINE B2 -6 210 1 5 1377 206 193 18 0 chr6 103878801 103878858 -45638179 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 1377 1016 100 0 5 chr6 103878872 103879095 -45637942 + (TCTA)n Simple_repeat Simple_repeat 1 221 0 5 1377 710 153 0 6 chr6 103879095 103879273 -45637764 + (TA)n Simple_repeat Simple_repeat 2 178 0 5 1377 1513 236 80 0 chr6 103880118 103880508 -45636529 - MTC LTR MaLR 0 421 1 5 1377 251 346 58 58 chr6 103881009 103881181 -45635856 - MLT1H LTR MaLR -271 278 107 5 1377 290 286 43 95 chr6 103881315 103881431 -45635606 - PB1D10 SINE Alu -7 110 1 5 1377 204 171 24 0 chr6 103881959 103882000 -45635037 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1377 843 147 0 0 chr6 103882019 103882196 -45634841 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 5 1377 435 299 43 21 chr6 103883024 103883164 -45633873 + RSINE1 SINE B4 2 144 -21 5 1377 871 64 10 0 chr6 103883265 103883395 -45633642 + B1_Mus1 SINE Alu 16 147 -1 5 1377 197 65 32 0 chr6 103883395 103883426 -45633611 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1377 635 281 51 19 chr6 103884776 103884990 -45632047 + ID_B1 SINE B4 1 221 -3 5 1377 241 259 17 17 chr6 103885648 103885707 -45631330 - PB1D10 SINE Alu -11 106 48 5 1377 5292 45 1 0 chr6 103885775 103886434 -45630603 - L1Md_F2 LINE L1 -589 5294 4635 5 1377 2427 29 0 0 chr6 103886433 103886713 -45630324 + L1Md_F2 LINE L1 5307 5586 -297 5 1377 8105 43 1 5 chr6 103886714 103887710 -45629327 + L1Md_F2 LINE L1 5588 6579 -3 5 1377 254 289 167 50 chr6 103887858 103887978 -45629059 - RMER4A LTR ERVK -44 422 289 5 1377 1212 264 46 27 chr6 103891261 103891631 -45625406 - MTEa LTR MaLR 0 379 3 5 1377 227 294 14 14 chr6 103891918 103891987 -45625050 + ID4 SINE ID 5 73 -10 5 1377 947 221 58 39 chr6 103892890 103892982 -45624055 + RMER17C LTR ERVK 95 182 -228 5 1377 965 78 6 19 chr6 103892982 103893138 -45623899 + (TTCTC)n Simple_repeat Simple_repeat 2 155 0 5 1377 1329 73 0 0 chr6 103893141 103893319 -45623718 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 5 1377 947 221 58 39 chr6 103893319 103893532 -45623505 + RMER17C LTR ERVK 183 408 -2 5 1377 396 353 0 0 chr6 103893532 103893645 -45623392 + B3A SINE B2 76 188 -10 5 1377 217 276 40 0 chr6 103894784 103894860 -45622177 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 5 1377 434 282 56 8 chr6 103895775 103895900 -45621137 + MTE2a LTR MaLR 247 377 -2 5 1377 436 179 43 36 chr6 103896014 103896153 -45620884 + Lx9 LINE L1 7502 7641 -3 5 1377 456 174 280 25 chr6 103896169 103896287 -45620750 - B1_Mur4 SINE Alu -1 149 2 5 1377 3152 59 5 0 chr6 103896296 103896734 -45620303 - L1Md_F2 LINE L1 0 6582 6162 5 1377 184 185 37 0 chr6 103896739 103896793 -45620244 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 1377 396 59 0 0 chr6 103899334 103899385 -45617652 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1377 351 0 0 0 chr6 103899385 103899423 -45617614 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1377 1481 351 102 11 chr6 103899458 103899623 -45617414 - Lx7 LINE L1 -201 7272 7052 5 1377 6016 63 1 21 chr6 103899623 103900419 -45616618 - L1Md_F2 LINE L1 -2 6580 5801 5 1377 1481 333 77 20 chr6 103900419 103901076 -45615961 - Lx7 LINE L1 -645 7051 6357 5 1377 492 18 0 0 chr6 103901747 103901804 -45615233 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1377 285 167 0 0 chr6 103902677 103902731 -45614306 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1377 23 0 0 0 chr6 103904993 103905016 -45612021 + AT_rich Low_complexity Low_complexity 1 23 0 5 1377 40 37 0 0 chr6 103905257 103905311 -45611726 + AT_rich Low_complexity Low_complexity 1 54 0 5 1377 317 295 32 0 chr6 103905569 103905664 -45611373 - B1F SINE Alu -51 98 1 5 1377 266 0 29 0 chr6 103906229 103906263 -45610774 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1377 288 53 0 0 chr6 103906935 103906973 -45610064 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1377 212 264 19 0 chr6 103906976 103907029 -45610008 + (CATA)n Simple_repeat Simple_repeat 1 54 0 5 1377 532 273 117 5 chr6 103907180 103907368 -45609669 - B3 SINE B2 -5 211 3 5 1377 5079 187 34 33 chr6 103907511 103908560 -45608477 - Lx4B LINE L1 -5 7053 6004 5 1377 298 314 23 11 chr6 103908719 103908806 -45608231 + PB1D10 SINE Alu 9 96 -21 5 1377 922 101 22 7 chr6 103909601 103909740 -45607297 + RLTR17 LTR ERVK 2 142 -550 5 1377 348 103 0 0 chr6 103909821 103909879 -45607158 + (TATG)n Simple_repeat Simple_repeat 2 59 0 5 1377 234 213 16 0 chr6 103909902 103909963 -45607074 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1377 507 347 73 20 chr6 103910613 103911104 -45605933 + L1MD2 LINE L1 5484 6000 -359 5 1377 1340 296 78 31 chr6 103911173 103911810 -45605227 - Lx6 LINE L1 -2 7458 6457 5 1377 497 30 15 0 chr6 103911810 103911877 -45605160 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 5 1377 619 280 94 5 chr6 103911877 103911929 -45605108 - Lx6 LINE L1 -740 6720 6668 5 1377 1754 219 27 5 chr6 103911928 103912444 -45604593 + Lx5 LINE L1 5535 6059 -1401 5 1377 285 382 0 0 chr6 103912716 103912805 -45604232 - PB1D10 SINE Alu -16 101 13 5 1377 324 0 0 0 chr6 103913992 103914028 -45603009 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 5 1377 3219 48 179 2 chr6 103914746 103915181 -45601856 - RLTR1B LTR ERV1 0 512 1 5 1377 293 342 42 19 chr6 103915344 103915504 -45601533 + MER63A DNA AcHobo 37 164 -46 5 1377 3660 152 3 15 chr6 103915686 103916299 -45600738 - Lx2B LINE L1 -4 6996 6391 5 1377 271 318 0 0 chr6 103916371 103916434 -45600603 + RSINE1 SINE B4 84 146 -19 5 1377 249 326 103 21 chr6 103917278 103917375 -45599662 + B1_Mur2 SINE Alu 6 110 -39 5 1377 358 359 99 70 chr6 103917422 103917593 -45599444 + B3A SINE B2 6 181 -17 6 1377 432 55 0 0 chr6 103918281 103918336 -45598701 + (A)n Simple_repeat Simple_repeat 1 55 0 6 1377 463 302 47 8 chr6 103918791 103918918 -45598119 + B3A SINE B2 1 132 -66 6 1377 351 0 0 0 chr6 103918958 103918997 -45598040 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1377 366 178 0 0 chr6 103918997 103919087 -45597950 + GA-rich Low_complexity Low_complexity 1 90 0 6 1377 826 300 29 0 chr6 103919204 103919447 -45597590 + Lx8 LINE L1 7108 7357 -116 6 1377 1398 170 0 0 chr6 103919624 103919853 -45597184 + MTC LTR MaLR 193 421 0 6 1377 183 80 0 0 chr6 103919862 103919887 -45597150 + (CCTG)n Simple_repeat Simple_repeat 1 25 0 6 1377 540 279 47 72 chr6 103919888 103920081 -45596956 + ORR1C2 LTR MaLR 197 384 0 6 1377 843 190 11 43 chr6 103920086 103920273 -45596764 + ORR1C2-int LTR MaLR 6 186 -1072 6 1377 8024 52 1 0 chr6 103920273 103921530 -45595507 - L1Md_F2 LINE L1 -12 6570 5313 6 1377 1058 199 19 10 chr6 103921530 103921738 -45595299 + ORR1C2-int LTR MaLR 188 397 -861 6 1377 1769 247 129 10 chr6 103921739 103922258 -45594779 + Lx6 LINE L1 6786 7366 -94 6 1377 1333 221 249 1 chr6 103922258 103922661 -45594376 + ORR1C2-int LTR MaLR 383 822 -436 6 1377 317 346 30 8 chr6 103923811 103923942 -45593095 - B1F SINE Alu -7 142 9 6 1377 3878 171 32 20 chr6 103924895 103925633 -45591404 + Lx5 LINE L1 6299 7045 -5 6 1377 213 129 67 33 chr6 103926154 103926274 -45590763 + (TA)n Simple_repeat Simple_repeat 1 124 0 6 1377 207 0 0 0 chr6 103926953 103926976 -45590061 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1377 2492 260 148 8 chr6 103926980 103927476 -45589561 - Lx6 LINE L1 -31 7429 6911 6 1377 405 0 0 0 chr6 103927476 103927521 -45589516 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1377 2492 285 113 46 chr6 103927521 103928016 -45589021 - Lx6 LINE L1 -550 6910 6079 6 1377 257 368 100 34 chr6 103928931 103929252 -45587785 - L2a LINE L2 -65 3361 3020 6 1377 403 60 0 29 chr6 103929455 103929524 -45587513 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 6 1377 369 0 0 0 chr6 103929584 103929625 -45587412 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1377 1054 108 0 0 chr6 103930088 103930236 -45586801 + B1_Mus1 SINE Alu 1 148 0 6 1377 183 80 0 0 chr6 103930236 103930261 -45586776 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1377 186 71 0 0 chr6 103930416 103930444 -45586593 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1377 423 317 40 40 chr6 103930445 103930593 -45586444 - B1F SINE Alu -1 148 1 6 1377 504 72 0 0 chr6 103931622 103931691 -45585346 + (TTA)n Simple_repeat Simple_repeat 1 69 0 6 1377 348 220 26 35 chr6 103932226 103932339 -45584698 + Lx2B LINE L1 6885 6996 -4 6 1377 342 115 0 0 chr6 103932537 103932589 -45584448 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1377 192 97 0 0 chr6 103932591 103932622 -45584415 + (CATG)n Simple_repeat Simple_repeat 1 31 0 6 1377 435 331 29 0 chr6 103932627 103932766 -45584271 - RSINE1 SINE B4 -19 146 4 6 1377 21 36 0 0 chr6 103932992 103933020 -45584017 + AT_rich Low_complexity Low_complexity 1 28 0 6 1377 213 39 0 0 chr6 103934007 103934033 -45583004 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1377 294 29 0 0 chr6 103934503 103934538 -45582499 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 1377 4292 43 0 2 chr6 103934538 103935052 -45581985 - L1Md_F2 LINE L1 -21 6561 6049 6 1377 764 226 82 22 chr6 103935360 103935627 -45581410 - L1MCa LINE L1 -2889 3432 3150 6 1377 627 71 0 0 chr6 103935778 103935863 -45581174 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 1377 1128 351 44 6 chr6 103935869 103936371 -45580666 - Lx8 LINE L1 -158 7315 6795 6 1377 26 0 0 0 chr6 103936383 103936409 -45580628 + AT_rich Low_complexity Low_complexity 1 26 0 6 1377 1815 126 42 3 chr6 103936434 103936720 -45580317 - Lx3A LINE L1 -10 6971 6675 6 1377 5487 108 7 13 chr6 103936733 103937709 -45579328 - Lx3A LINE L1 -583 6398 5429 6 1377 3562 169 36 6 chr6 103937736 103938403 -45578634 - Lx2B LINE L1 -18 6982 6296 6 1377 770 266 117 25 chr6 103938492 103938766 -45578271 - Lx8 LINE L1 -829 6644 6346 6 1377 310 251 138 73 chr6 103938780 103939012 -45578025 - L1MCa LINE L1 -3630 2691 2445 6 1377 28 61 0 0 chr6 103939167 103939216 -45577821 + AT_rich Low_complexity Low_complexity 1 49 0 6 1377 585 285 120 0 chr6 103939355 103939681 -45577356 - L1MCa LINE L1 -4081 2427 2063 6 172 16213 144 35 11 chr6 103939891 103940245 -45576792 - Lx4A LINE L1 -909 6149 5782 6 1378 369 0 0 0 chr6 103940245 103940286 -45576751 + (TTA)n Simple_repeat Simple_repeat 1 41 0 6 1378 3986 71 4 15 chr6 103940287 103940819 -45576218 - L1Md_F2 LINE L1 -19 6563 6038 6 1378 16213 143 48 16 chr6 103940819 103943702 -45573335 - Lx4A LINE L1 -96 5781 2807 6 1378 1123 333 86 9 chr6 103943701 103944259 -45572778 - Lx9 LINE L1 -662 6982 6382 6 1378 275 253 21 10 chr6 103944463 103944559 -45572478 - L1MCa LINE L1 -4481 2027 1931 6 1378 450 285 51 10 chr6 103944742 103944937 -45572100 - L1MCa LINE L1 -4785 1723 1521 6 1378 204 208 0 36 chr6 103944990 103945045 -45571992 + T-rich Low_complexity Low_complexity 3 55 0 6 1378 340 111 0 31 chr6 103945123 103945188 -45571849 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1378 216 339 252 0 chr6 103945196 103945311 -45571726 - B3 SINE B2 -71 145 2 6 1378 584 331 88 65 chr6 103945321 103945647 -45571390 - L1MCa LINE L1 -5122 1386 1067 6 1378 276 30 0 0 chr6 103945647 103945680 -45571357 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6 1378 584 331 88 65 chr6 103945680 103945786 -45571251 - L1MCa LINE L1 -5442 1066 944 6 1378 213 65 0 0 chr6 103946077 103946108 -45570929 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1378 26 30 0 0 chr6 103946584 103946617 -45570420 + AT_rich Low_complexity Low_complexity 1 33 0 6 1378 2315 171 3 5 chr6 103946640 103947029 -45570008 - Lx4A LINE L1 -2 7056 6669 6 1378 518 324 79 30 chr6 103947194 103947445 -45569592 + MTEb LTR MaLR 1 264 -115 6 1378 378 0 0 0 chr6 103947720 103947762 -45569275 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1378 670 289 64 0 chr6 103947847 103948034 -45569003 - MTD LTR MaLR 0 419 221 6 1378 597 49 0 0 chr6 103948231 103948312 -45568725 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 1378 787 304 9 19 chr6 103948315 103948526 -45568511 + B4 SINE B4 84 292 0 6 1378 1028 68 61 6 chr6 103950232 103950396 -45566641 - L1_Mus3 LINE L1 -3 6635 6463 6 1378 7123 148 40 2 chr6 103950657 103952608 -45564429 - L1_Mus3 LINE L1 -6 6632 4601 6 1378 825 64 143 8 chr6 103952608 103952734 -45564303 - L1_Mus1 LINE L1 0 6567 6425 6 1378 7123 149 5 19 chr6 103952734 103954363 -45562674 - L1_Mus3 LINE L1 -1283 4600 4580 6 1378 238 179 0 35 chr6 103954425 103954483 -45562554 + T-rich Low_complexity Low_complexity 5 60 0 6 1378 222 265 28 42 chr6 103954808 103954879 -45562158 + L3 LINE CR1 55 124 -4365 6 1378 25 31 0 0 chr6 103955490 103955522 -45561515 + AT_rich Low_complexity Low_complexity 1 32 0 6 1378 595 269 41 29 chr6 103955721 103955893 -45561144 - B3 SINE B2 0 216 43 6 1378 351 0 0 0 chr6 103955912 103955951 -45561086 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1378 424 253 51 13 chr6 103955961 103956117 -45560920 + L1MA6 LINE L1 6083 6244 -56 6 1378 32 0 0 0 chr6 103956975 103957007 -45560030 + AT_rich Low_complexity Low_complexity 1 32 0 6 1378 573 119 37 0 chr6 103957007 103957116 -45559921 - Lx3_Mus LINE L1 -8 7001 6889 6 1378 3396 80 4 0 chr6 103957116 103957568 -45559469 - Lx3_Mus LINE L1 -343 6666 6213 6 1378 861 171 24 12 chr6 103957576 103957590 -45559447 - B2_Mm2 SINE B2 -23 172 159 6 1378 333 0 0 0 chr6 103957590 103957627 -45559410 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 6 1378 861 171 24 12 chr6 103957627 103957778 -45559259 - B2_Mm2 SINE B2 -37 158 5 6 1378 2105 114 36 14 chr6 103957800 103958156 -45558881 - Lx LINE L1 -4 6650 6287 6 1378 210 250 0 16 chr6 103958268 103958329 -45558708 + CT-rich Low_complexity Low_complexity 2 61 0 6 1378 23 0 0 0 chr6 103958655 103958678 -45558359 + AT_rich Low_complexity Low_complexity 1 23 0 6 1378 276 298 24 0 chr6 103959089 103959173 -45557864 + B4 SINE B4 39 124 -168 6 1378 609 14 0 0 chr6 103959173 103959243 -45557794 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1378 339 224 124 116 chr6 103959243 103959364 -45557673 + B4 SINE B4 171 292 0 6 1378 326 204 10 0 chr6 103959374 103959472 -45557565 + (CA)n Simple_repeat Simple_repeat 1 99 0 6 1378 786 219 153 0 chr6 103962493 103962676 -45554361 - B3 SINE B2 -5 211 1 6 1378 288 0 0 0 chr6 103963025 103963057 -45553980 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1378 527 318 15 8 chr6 103963072 103963202 -45553835 - RSINE1 SINE B4 -23 142 12 6 1378 189 351 60 15 chr6 103963326 103963459 -45553578 + MIRb SINE MIR 75 213 -55 6 1378 212 267 0 0 chr6 103963557 103963602 -45553435 + MIR SINE MIR 217 261 -1 6 1378 344 176 15 0 chr6 103963613 103963681 -45553356 - MTEb LTR MaLR -2 377 309 6 1378 333 254 0 0 chr6 103963717 103963788 -45553249 + B3 SINE B2 3 73 -143 6 1378 3770 166 87 3 chr6 103963788 103964538 -45552499 - L1_Mur2 LINE L1 -13 5864 5052 6 1378 2114 231 28 8 chr6 103964529 103965031 -45552006 + Lx4B LINE L1 5825 6336 -722 6 1378 225 0 0 0 chr6 103965136 103965161 -45551876 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 6 1378 4249 143 106 11 chr6 103965166 103966239 -45550798 + L1_Mur2 LINE L1 393 1580 -4297 6 1378 870 29 0 0 chr6 103966239 103966344 -45550693 + (GA)n Simple_repeat Simple_repeat 2 106 0 6 1378 4249 110 49 18 chr6 103966344 103966768 -45550269 + L1_Mur2 LINE L1 1581 2004 -3873 6 1378 260 326 58 43 chr6 103967959 103968097 -45548940 - B1F1 SINE Alu -8 141 2 6 1378 244 341 48 43 chr6 103968117 103968275 -45548762 + MLT2D LTR ERVL 134 285 -129 6 1378 1275 101 26 0 chr6 103968530 103968719 -45548318 - B2_Mm2 SINE B2 -1 194 1 6 1378 438 20 0 0 chr6 103970964 103971015 -45546022 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1378 228 261 0 30 chr6 103971426 103971493 -45545544 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 6 1378 333 47 0 0 chr6 103971925 103971968 -45545069 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1378 1418 194 57 70 chr6 103972579 103972962 -45544075 - ORR1C1 LTR MaLR 0 378 1 6 1378 261 313 70 78 chr6 103974666 103974711 -45542326 + ID SINE ID 42 85 -139 6 1378 214 289 53 80 chr6 103974711 103974824 -45542213 + PB1D10 SINE Alu 1 110 -7 6 1378 244 359 11 11 chr6 103975742 103975835 -45541202 - PB1D10 SINE Alu -24 93 1 6 1378 26 0 0 0 chr6 103975838 103975864 -45541173 + AT_rich Low_complexity Low_complexity 1 26 0 6 1378 404 320 61 47 chr6 103976518 103976731 -45540306 + B3 SINE B2 1 216 0 6 1378 581 268 106 30 chr6 103977009 103977333 -45539704 - L1MA4 LINE L1 -192 5964 5595 6 1378 25 0 0 0 chr6 103978305 103978330 -45538707 + AT_rich Low_complexity Low_complexity 1 25 0 6 1378 462 328 29 6 chr6 103980122 103980297 -45536740 + B3A SINE B2 2 180 -18 7 1378 648 271 55 99 chr6 103980388 103980589 -45536448 + B3A SINE B2 2 193 -2 7 1378 35 54 0 0 chr6 103980800 103980856 -45536181 + AT_rich Low_complexity Low_complexity 1 56 0 7 1378 256 343 77 83 chr6 103981009 103981165 -45535872 - B4A SINE B4 -136 156 2 7 1378 1320 283 25 0 chr6 103981782 103982139 -45534898 - ORR1D2 LTR MaLR -2 368 3 7 1378 435 331 18 18 chr6 103982552 103982715 -45534322 + RSINE1 SINE B4 3 165 0 7 1378 3575 74 18 18 chr6 103983124 103983620 -45533417 - LTRIS2 LTR ERV1 0 564 69 7 1378 346 317 97 65 chr6 103984047 103984366 -45532671 + MLT1B LTR MaLR 48 391 -17 7 1378 636 282 196 39 chr6 103985375 103985737 -45531300 + MTC LTR MaLR 3 421 0 7 1378 685 308 63 38 chr6 103985784 103986131 -45530906 + ORR1E LTR MaLR 4 359 0 7 1378 207 0 0 0 chr6 103986373 103986396 -45530641 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1378 300 223 39 125 chr6 103986419 103986547 -45530490 + HAL1-3A_ME LINE L1 1911 2027 -831 7 1378 488 219 6 0 chr6 103986548 103986712 -45530325 + (CA)n Simple_repeat Simple_repeat 2 166 0 7 1378 324 184 0 62 chr6 103988145 103988226 -45528811 - Lx6 LINE L1 -3 7457 7382 7 1378 3454 203 60 22 chr6 103991820 103992580 -45524457 - Lx3C LINE L1 -2 6974 6186 7 1378 261 269 14 43 chr6 103992659 103992729 -45524308 - PB1D10 SINE Alu -27 90 23 7 1378 1227 52 0 0 chr6 103992985 103993140 -45523897 + (TTTCC)n Simple_repeat Simple_repeat 5 159 0 7 1378 24 0 0 0 chr6 103993315 103993339 -45523698 + GC_rich Low_complexity Low_complexity 1 24 0 7 1378 24 77 0 0 chr6 103993692 103993744 -45523293 + AT_rich Low_complexity Low_complexity 1 52 0 7 1378 7118 55 20 1 chr6 103993751 103994653 -45522384 + L1Md_F2 LINE L1 5652 6570 -12 7 1378 681 257 0 0 chr6 103994657 103994793 -45522244 - B1_Mur2 SINE Alu -12 137 2 7 1378 603 0 0 0 chr6 103994814 103994881 -45522156 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 7 1378 269 309 209 49 chr6 103996116 103996285 -45520752 + MIRc SINE MIR 11 216 -52 7 1378 23 0 0 0 chr6 103997023 103997046 -45519991 + AT_rich Low_complexity Low_complexity 1 23 0 7 1378 297 0 0 0 chr6 103997046 103997079 -45519958 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1378 29 50 0 16 chr6 103997653 103997681 -45519356 + AT_rich Low_complexity Low_complexity 1 28 0 7 1378 5471 78 12 0 chr6 103997681 103998408 -45518629 + L1_Mus1 LINE L1 5832 6567 0 7 1378 29 50 0 16 chr6 103998408 103998440 -45518597 + AT_rich Low_complexity Low_complexity 1 32 0 7 1378 222 37 0 0 chr6 103999943 103999970 -45517067 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1378 239 54 27 0 chr6 104000096 104000133 -45516904 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1378 460 344 101 55 chr6 104000572 104001006 -45516031 + MLT1C LTR MaLR 14 467 0 2 1378 716 50 8 32 chr6 104001583 104001706 -45515331 + L1Md_F2 LINE L1 6463 6582 0 3 1378 612 118 16 8 chr6 104002686 104002814 -45514223 + (TAGA)n Simple_repeat Simple_repeat 1 129 0 4 1378 276 228 39 19 chr6 104002825 104002928 -45514109 + (TAGA)n Simple_repeat Simple_repeat 3 107 0 4 1378 492 116 0 0 chr6 104002928 104003014 -45514023 + (CATA)n Simple_repeat Simple_repeat 2 87 0 5 1378 3428 276 30 39 chr6 104003485 104004551 -45512486 + Lx7 LINE L1 6276 7331 -365 6 1378 211 247 0 36 chr6 104004561 104004645 -45512392 + T-rich Low_complexity Low_complexity 5 85 0 7 1378 663 13 0 0 chr6 104006619 104006695 -45510342 + (GA)n Simple_repeat Simple_repeat 1 76 0 8 1378 22 35 0 0 chr6 104006850 104006879 -45510158 + AT_rich Low_complexity Low_complexity 1 29 0 9 1378 248 292 98 63 chr6 104006930 104007029 -45510008 - L1M2 LINE L1 -817 5326 5221 1 1378 2198 121 157 30 chr6 104007029 104007457 -45509580 + RLTR45 LTR ERVK 1 482 0 1 1378 248 292 98 63 chr6 104007457 104007562 -45509475 - L1M2 LINE L1 -923 5220 5115 1 1378 484 317 48 53 chr6 104007578 104007793 -45509244 + L1M2 LINE L1 5390 5607 -684 1 1378 354 247 42 176 chr6 104007793 104007973 -45509064 + B2_Mm2 SINE B2 1 158 -37 1 1378 225 0 0 0 chr6 104007973 104007998 -45509039 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1378 354 247 42 176 chr6 104007998 104008033 -45509004 + B2_Mm2 SINE B2 159 187 -8 1 1378 484 317 48 53 chr6 104008033 104008233 -45508804 + L1M2 LINE L1 5608 5803 -488 1 1378 313 269 43 0 chr6 104008254 104008347 -45508690 + MTEa LTR MaLR 279 375 -4 1 1378 27 49 0 0 chr6 104009077 104009118 -45507919 + AT_rich Low_complexity Low_complexity 1 41 0 1 1378 450 0 0 0 chr6 104011574 104011624 -45505413 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1378 272 360 51 34 chr6 104011698 104011876 -45505161 - B4A SINE B4 -111 181 1 1 1378 417 268 9 0 chr6 104012737 104012849 -45504188 - Lx7 LINE L1 -666 7030 6918 1 1378 2782 211 58 23 chr6 104012856 104014012 -45503025 - Lx7 LINE L1 -1230 6466 5284 1 1378 23 54 0 0 chr6 104014013 104014050 -45502987 + AT_rich Low_complexity Low_complexity 1 37 0 2 1378 264 320 51 19 chr6 104014183 104014198 -45502839 - Lx7 LINE L1 -329 7367 7353 2 1378 221 57 0 28 chr6 104014198 104014234 -45502803 + (CAAAC)n Simple_repeat Simple_repeat 3 37 0 2 1378 264 320 51 19 chr6 104014234 104014374 -45502663 - Lx7 LINE L1 -344 7352 7207 2 1378 35648 53 1 4 chr6 104014464 104020556 -45496481 + L1Md_T LINE L1 1 5589 -297 2 1378 8476 31 0 0 chr6 104020556 104021552 -45495485 + L1Md_T LINE L1 5590 6585 0 2 1378 191 180 0 32 chr6 104021558 104021621 -45495416 + A-rich Low_complexity Low_complexity 2 62 0 2 1378 1332 264 97 20 chr6 104021632 104022034 -45495003 - Lx6 LINE L1 -236 7224 6792 2 1378 363 168 100 50 chr6 104022028 104022128 -45494909 - L1_Mur3 LINE L1 -3704 2176 2072 2 1378 614 136 8 0 chr6 104022166 104022284 -45494753 + (TG)n Simple_repeat Simple_repeat 1 119 0 2 1378 1324 224 41 9 chr6 104022284 104022627 -45494410 - L1_Mur3 LINE L1 -3830 2050 1697 2 1378 295 129 155 14 chr6 104023292 104023363 -45493674 - L1_Mur3 LINE L1 -2868 3012 2932 2 1378 4936 191 43 50 chr6 104023360 104024902 -45492135 - L1_Mur3 LINE L1 -3407 2473 923 2 1378 192 77 0 0 chr6 104024902 104024928 -45492109 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2 1378 3649 246 68 28 chr6 104024928 104025607 -45491430 - L1_Mur3 LINE L1 -6806 922 232 2 1378 302 67 22 0 chr6 104026639 104026684 -45490353 + (TTTTC)n Simple_repeat Simple_repeat 2 47 0 3 1378 411 21 0 0 chr6 104026802 104026850 -45490187 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1378 426 39 0 0 chr6 104027026 104027078 -45489959 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1378 256 291 106 28 chr6 104027444 104027624 -45489413 + L1MC LINE L1 3814 4007 -2139 3 1378 510 308 12 55 chr6 104027770 104027935 -45489102 + RSINE1 SINE B4 4 161 -4 3 1378 3032 162 83 20 chr6 104028051 104028655 -45488382 + RLTR26 LTR ERVK 1 642 0 3 1378 300 287 11 11 chr6 104028803 104028891 -45488146 + L1MD LINE L1 4401 4488 -1658 3 1378 502 286 71 0 chr6 104029050 104029176 -45487861 + ID_B1 SINE B4 80 214 -10 3 1378 555 358 0 0 chr6 104029261 104029426 -45487611 - RSINE1 SINE B4 0 165 1 3 1378 640 322 91 23 chr6 104033681 104033832 -45483205 + B4A SINE B4 5 160 -132 3 1378 3323 35 5 0 chr6 104033832 104034226 -45482811 - MTA_Mm LTR MaLR 0 396 1 4 1378 640 322 91 23 chr6 104034226 104034338 -45482699 + B4A SINE B4 161 285 -7 3 1378 606 71 0 0 chr6 104034345 104034429 -45482608 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1378 1265 69 6 0 chr6 104034685 104034858 -45482179 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 4 1378 205 191 21 0 chr6 104036474 104036521 -45480516 + (CAAAG)n Simple_repeat Simple_repeat 2 49 0 4 1378 242 320 36 91 chr6 104036814 104036924 -45480113 - B3A SINE B2 -89 109 6 4 1378 254 314 108 17 chr6 104036954 104037074 -45479963 + MER5A1 DNA MER1_type 18 148 -18 4 1378 237 244 110 0 chr6 104038135 104038217 -45478820 + MER2 DNA MER2_type 109 199 -146 4 1378 720 264 71 0 chr6 104038226 104038423 -45478614 - B3 SINE B2 0 216 6 4 1378 268 305 40 40 chr6 104038426 104038525 -45478512 + MER2 DNA MER2_type 194 292 -53 4 1378 414 0 0 0 chr6 104038527 104038573 -45478464 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1378 297 324 98 28 chr6 104038643 104039101 -45477936 - L1MC3 LINE L1 -109 7676 7187 4 1378 370 246 45 0 chr6 104039200 104039310 -45477727 - Lx9 LINE L1 -7 7637 7523 5 1378 399 229 110 41 chr6 104039335 104039481 -45477556 + Lx9 LINE L1 7284 7439 -205 5 1378 247 127 32 0 chr6 104039656 104039719 -45477318 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 5 1378 301 242 24 0 chr6 104039786 104039895 -45477142 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1378 207 0 0 0 chr6 104039895 104039918 -45477119 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1378 301 242 24 0 chr6 104039918 104039932 -45477105 + (TA)n Simple_repeat Simple_repeat 2 16 0 5 1378 25 31 0 0 chr6 104041614 104041646 -45475391 + AT_rich Low_complexity Low_complexity 1 32 0 5 1378 389 184 39 0 chr6 104041769 104041872 -45475165 + Lx9 LINE L1 7531 7637 -7 5 1378 658 86 9 0 chr6 104042621 104042726 -45474311 + L1_Mus2 LINE L1 6461 6566 0 5 1378 463 138 5 0 chr6 104042727 104042808 -45474229 + Lx LINE L1 5947 6030 -537 5 1378 4580 24 2 2 chr6 104042803 104043339 -45473698 - L1Md_T LINE L1 -12 5871 5336 5 1378 5840 39 1 0 chr6 104043339 104044039 -45472998 + L1Md_T LINE L1 5881 6581 -1 5 1378 3987 132 17 2 chr6 104044066 104044697 -45472340 + Lx LINE L1 6007 6647 -7 5 1378 317 299 88 27 chr6 104044913 104045061 -45471976 - L1M5 LINE L1 -2319 3827 3671 6 1378 186 71 0 0 chr6 104045530 104045558 -45471479 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1378 225 312 70 7 chr6 104045795 104045937 -45471100 + Charlie5 DNA MER1_type 2215 2365 -259 6 1378 299 248 146 27 chr6 104046248 104046468 -45470569 - Lx9 LINE L1 -16 7628 7383 6 1378 2991 88 5 5 chr6 104046642 104047063 -45469974 - BGLII LTR ERVK 0 421 1 6 1378 1235 43 18 6 chr6 104048411 104048575 -45468462 - L1_Mus1 LINE L1 0 6567 6402 6 1378 609 317 30 5 chr6 104049043 104049243 -45467794 + Lx5 LINE L1 6846 7050 0 6 1378 180 0 0 0 chr6 104049387 104049407 -45467630 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1378 23 0 0 0 chr6 104049989 104050012 -45467025 + AT_rich Low_complexity Low_complexity 1 23 0 6 1378 23 0 0 0 chr6 104052646 104052669 -45464368 + AT_rich Low_complexity Low_complexity 1 23 0 6 1378 2646 86 16 5 chr6 104053688 104054072 -45462965 + L1_Mus3 LINE L1 6244 6631 -7 7 1378 193 318 198 9 chr6 104054164 104054275 -45462762 + MER5B DNA MER1_type 27 158 -20 7 1378 234 0 0 0 chr6 104054696 104054722 -45462315 + (TA)n Simple_repeat Simple_repeat 1 26 0 7 1378 563 321 40 29 chr6 104054949 104055342 -45461695 - L1MC1 LINE L1 -1728 6057 5651 7 1378 234 335 18 25 chr6 104055370 104055507 -45461530 + B3A SINE B2 8 140 -53 7 1378 258 130 68 135 chr6 104055513 104055646 -45461391 - L1MC LINE L1 -908 5436 5313 7 1378 227 79 26 0 chr6 104055692 104055730 -45461307 + (TA)n Simple_repeat Simple_repeat 2 40 0 7 1378 7121 40 3 0 chr6 104056159 104057039 -45459998 - L1_Mm LINE L1 -1338 4545 3663 7 1378 1016 68 55 0 chr6 104057039 104057185 -45459852 + L1Md_F3 LINE L1 6417 6570 -14 7 1378 416 278 77 25 chr6 104057538 104057734 -45459303 - L1MC1 LINE L1 -1332 4814 4609 7 1378 325 0 44 0 chr6 104058176 104058221 -45458816 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1378 477 259 8 108 chr6 104059227 104059357 -45457680 + B3 SINE B2 1 117 -99 8 1378 588 116 0 0 chr6 104059401 104059496 -45457541 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 1378 197 385 15 44 chr6 104059552 104059688 -45457349 - MIRb SINE MIR -67 201 70 8 1378 570 135 29 0 chr6 104059889 104059993 -45457044 - Lx LINE L1 -7 6647 6541 8 1378 5694 149 5 5 chr6 104059993 104060963 -45456074 + L1_Mur2 LINE L1 3966 4935 -942 8 1378 1103 119 0 6 chr6 104061124 104061301 -45455736 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 8 1378 311 230 11 0 chr6 104061305 104061392 -45455645 + CT-rich Low_complexity Low_complexity 2 89 0 8 1378 240 86 0 0 chr6 104061461 104061496 -45455541 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1378 619 335 66 4 chr6 104061522 104061750 -45455287 - B4A SINE B4 -50 242 1 8 1378 274 353 0 0 chr6 104062342 104062458 -45454579 - L1MC4a LINE L1 -989 6893 6778 8 1378 249 320 0 0 chr6 104062762 104062862 -45454175 - L1MC4a LINE L1 -1587 6408 6309 8 1378 226 333 27 0 chr6 104063058 104063133 -45453904 + ID4_ SINE ID 5 81 -2 9 1378 513 324 47 12 chr6 104063324 104063496 -45453541 + B3A SINE B2 1 178 -20 9 1378 2525 202 50 97 chr6 104064811 104065545 -45451492 - RMER6A LTR ERVK 0 756 57 9 1378 586 26 0 0 chr6 104065644 104065720 -45451317 - L1Md_T LINE L1 0 6582 6507 9 1378 554 289 7 0 chr6 104066720 104066855 -45450182 + B3A SINE B2 1 136 -62 9 1378 849 327 44 67 chr6 104067080 104067491 -45449546 + MTE2a LTR MaLR 11 382 -14 9 1378 351 0 0 0 chr6 104067536 104067575 -45449462 + (TC)n Simple_repeat Simple_repeat 2 40 0 9 1378 459 0 0 0 chr6 104067575 104067625 -45449412 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1378 711 211 0 0 chr6 104068834 104068990 -45448047 + CT-rich Low_complexity Low_complexity 1 156 0 9 1378 1706 121 31 49 chr6 104068990 104069276 -45447761 - Lx3A LINE L1 -2 6979 6699 9 1378 309 222 0 0 chr6 104069277 104069331 -45447706 - Lx3A LINE L1 -170 6811 6758 1 1378 252 0 0 0 chr6 104069358 104069386 -45447651 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1378 1779 86 29 0 chr6 104069386 104069630 -45447407 - Lx3A LINE L1 -213 6768 6518 1 1378 462 95 0 0 chr6 104069620 104069683 -45447354 + Lx3A LINE L1 5646 5708 -1273 1 1378 414 100 0 0 chr6 104070443 104070503 -45446534 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1379 228 35 0 0 chr6 104071890 104071919 -45445118 + (TTA)n Simple_repeat Simple_repeat 3 31 0 1 1379 658 325 6 6 chr6 104072878 104073039 -45443998 - RSINE1 SINE B4 -1 164 4 1 1379 500 273 89 19 chr6 104073151 104073364 -45443673 + LTR37B LTR ERV1 208 435 -33 1 1379 370 305 72 162 chr6 104073496 104073817 -45443220 + B4A SINE B4 1 292 0 1 1379 830 132 0 45 chr6 104073817 104074128 -45442909 + (CA)n Simple_repeat Simple_repeat 1 296 0 1 1379 21 0 0 0 chr6 104074765 104074786 -45442251 + AT_rich Low_complexity Low_complexity 1 21 0 1 1379 1471 314 122 97 chr6 104076430 104077605 -45439432 - Lx5 LINE L1 -21 7675 5835 1 1379 709 263 63 66 chr6 104077613 104077822 -45439215 + L1_Mur3 LINE L1 5515 5715 -165 1 1379 5312 133 41 3 chr6 104077822 104078681 -45438356 + Lx3A LINE L1 6088 6978 -3 1 1379 709 263 63 66 chr6 104078681 104078789 -45438248 + L1_Mur3 LINE L1 5716 5831 -49 1 1379 498 303 139 31 chr6 104078821 104079138 -45437899 - Lx8 LINE L1 -7 7466 7116 1 1379 309 323 66 36 chr6 104079299 104079466 -45437571 - Lx7 LINE L1 -834 6862 6691 1 1379 388 309 50 93 chr6 104080584 104080842 -45436195 + B4A SINE B4 4 264 -28 1 1379 270 0 0 0 chr6 104082430 104082460 -45434577 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1379 669 311 5 5 chr6 104082646 104082856 -45434181 - B3 SINE B2 -6 210 1 1 1379 747 216 79 99 chr6 104082958 104083210 -45433827 + RMER1B Other Other 809 1055 -11 1 1379 360 0 0 0 chr6 104083231 104083271 -45433766 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1379 2505 73 3 6 chr6 104083393 104083737 -45433300 + L1_Mus2 LINE L1 6221 6563 -3 1 1379 405 0 0 0 chr6 104084396 104084441 -45432596 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1379 295 295 0 89 chr6 104084730 104084853 -45432184 + PB1D9 SINE Alu 3 114 -6 1 1379 716 136 8 0 chr6 104085140 104085265 -45431772 + (TCCC)n Simple_repeat Simple_repeat 4 129 0 1 1379 420 248 0 49 chr6 104085490 104085613 -45431424 - Lx7 LINE L1 -883 6813 6697 1 1379 510 230 179 6 chr6 104086918 104087097 -45429940 - B3 SINE B2 -6 210 1 1 1379 465 287 5 78 chr6 104087399 104087603 -45429434 + B3A SINE B2 4 192 -6 1 1379 24 67 0 0 chr6 104087701 104087746 -45429291 + AT_rich Low_complexity Low_complexity 1 45 0 1 1379 273 324 28 0 chr6 104087844 104087952 -45429085 - L1MC1 LINE L1 -1 6332 6222 1 1379 5091 127 80 7 chr6 104088297 104089140 -45427897 + L1Md_F2 LINE L1 5675 6578 -4 1 1379 272 340 9 44 chr6 104089157 104089271 -45427766 + B3A SINE B2 34 143 -55 1 1379 323 350 201 9 chr6 104089624 104089843 -45427194 - L1M4c LINE L1 -4944 1440 1180 1 1379 495 0 0 0 chr6 104089852 104089907 -45427130 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1379 427 380 18 0 chr6 104089940 104090103 -45426934 - B3A SINE B2 -28 170 5 1 1379 21 36 0 0 chr6 104090208 104090236 -45426801 + AT_rich Low_complexity Low_complexity 1 28 0 1 1379 683 334 60 73 chr6 104090435 104090803 -45426234 - MTEa LTR MaLR -12 367 5 1 1379 369 394 55 20 chr6 104091174 104091519 -45425518 - L2 LINE L2 -2469 950 594 1 1379 933 306 89 9 chr6 104091554 104091881 -45425156 - ORR1E LTR MaLR -6 353 1 1 1379 204 379 99 73 chr6 104091916 104092380 -45424657 - L2 LINE L2 -2887 532 57 1 1379 591 142 0 0 chr6 104092496 104092602 -45424435 + (TA)n Simple_repeat Simple_repeat 2 107 0 1 1379 189 214 0 0 chr6 104092606 104092648 -45424389 + (CGTG)n Simple_repeat Simple_repeat 2 43 0 1 1379 555 29 0 0 chr6 104092776 104092845 -45424192 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1379 766 315 87 27 chr6 104093684 104093984 -45423053 - ORR1E LTR MaLR -11 348 31 1 1379 2598 207 34 21 chr6 104094397 104094929 -45422108 + RLTR20A LTR ERVK 3 541 0 1 1379 252 344 32 0 chr6 104095868 104095961 -45421076 - MIRb SINE MIR -57 211 116 1 1379 258 219 0 0 chr6 104096678 104096742 -45420295 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1379 23 0 0 0 chr6 104096782 104096805 -45420232 + AT_rich Low_complexity Low_complexity 1 23 0 1 1379 363 23 0 0 chr6 104097167 104097211 -45419826 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1379 578 306 34 0 chr6 104097214 104097361 -45419676 - RSINE1 SINE B4 -10 155 4 1 1379 465 66 0 0 chr6 104097461 104097522 -45419515 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1379 258 302 0 0 chr6 104098273 104098336 -45418701 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1379 952 145 14 0 chr6 104098960 104099105 -45417932 + B1_Mus1 SINE Alu 2 148 0 1 1379 22 0 0 0 chr6 104099105 104099127 -45417910 + AT_rich Low_complexity Low_complexity 1 22 0 1 1379 532 263 40 45 chr6 104099485 104099684 -45417353 - RCHARR1 DNA MER1_type -13 961 764 1 1379 983 288 22 32 chr6 104099687 104100057 -45416980 - ORR1D2 LTR MaLR -2 368 3 1 1379 1611 268 52 28 chr6 104100061 104100249 -45416788 - ORR1D2-int LTR MaLR -2 1368 1171 1 1379 648 132 0 8 chr6 104100249 104100371 -45416666 - L1_Mus4 LINE L1 -7 6629 6509 1 1379 1611 268 52 28 chr6 104100371 104100685 -45416352 - ORR1D2-int LTR MaLR -200 1170 854 1 1379 514 263 9 0 chr6 104100875 104100998 -45416039 + B1_Mur2 SINE Alu 13 142 -8 1 1379 1929 315 23 41 chr6 104101200 104101925 -45415112 - ORR1D2-int LTR MaLR -520 850 139 1 1379 8044 152 35 6 chr6 104101927 104103562 -45413475 - Lx4A LINE L1 0 7058 5362 1 1379 2034 130 6 3 chr6 104103558 104103897 -45413140 + L1_Mur2 LINE L1 4298 4637 -1240 1 1379 639 0 0 0 chr6 104103900 104103971 -45413066 + (CAAAA)n Simple_repeat Simple_repeat 5 75 0 1 1379 1942 156 12 18 chr6 104103986 104104326 -45412711 - ORR1A1 LTR MaLR -8 338 1 1 1379 237 128 0 0 chr6 104104327 104104374 -45412663 + (CCAA)n Simple_repeat Simple_repeat 1 47 0 1 1379 1485 156 74 13 chr6 104104376 104104688 -45412349 + L1_Mur2 LINE L1 4624 4954 -923 1 1379 1946 231 5 7 chr6 104104762 104105181 -45411856 + MTC LTR MaLR 4 421 0 1 1379 23 33 0 0 chr6 104105440 104105470 -45411567 + AT_rich Low_complexity Low_complexity 1 30 0 1 1379 198 0 0 0 chr6 104106100 104106122 -45410915 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1379 28 0 0 0 chr6 104106180 104106208 -45410829 + AT_rich Low_complexity Low_complexity 1 28 0 1 1379 306 0 0 0 chr6 104107906 104107940 -45409097 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1379 1124 44 0 0 chr6 104107941 104108078 -45408959 - B1_Mus2 SINE Alu -9 138 2 1 1379 23 54 0 0 chr6 104108080 104108117 -45408920 + AT_rich Low_complexity Low_complexity 1 37 0 1 1379 428 355 44 19 chr6 104108154 104108312 -45408725 - RSINE1 SINE B4 -1 164 3 1 1379 643 285 104 5 chr6 104109316 104109624 -45407413 - Lx4A LINE L1 -1407 5651 5302 1 1379 281 26 0 26 chr6 104109641 104109680 -45407357 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1379 410 254 69 16 chr6 104109692 104109882 -45407155 + L1MA4A LINE L1 5664 5848 -32 1 1379 1097 220 261 50 chr6 104110530 104110970 -45406067 - MT2A LTR ERVL 0 533 1 1 1379 330 295 110 39 chr6 104111068 104111223 -45405814 - Ricksha_c DNA MuDR -1285 763 598 1 1379 376 276 10 20 chr6 104111669 104111769 -45405268 + PB1D10 SINE Alu 18 116 -1 1 1379 261 282 97 26 chr6 104111844 104111957 -45405080 - MLT1B LTR MaLR -167 223 103 1 1379 1629 150 1 5 chr6 104113210 104113494 -45403543 + Lx2B LINE L1 6319 6602 -456 1 1379 242 339 58 42 chr6 104113496 104113616 -45403421 + MTD LTR MaLR 298 419 0 1 1379 21 0 0 0 chr6 104113791 104113812 -45403225 + AT_rich Low_complexity Low_complexity 1 21 0 1 1379 303 208 91 0 chr6 104114007 104114084 -45402953 + MLT1B LTR MaLR 137 220 -170 1 1379 247 295 46 33 chr6 104114185 104114326 -45402711 - MLT1B-int LTR MaLR -858 513 252 1 1379 454 299 45 85 chr6 104115876 104116077 -45400960 + RMER30 DNA MER1_type 6 198 -4 1 1379 1158 171 19 31 chr6 104116792 104117051 -45399986 - L1_Mur2 LINE L1 -451 5426 5171 1 1379 5940 182 39 10 chr6 104117063 104118184 -45398853 + Lx5 LINE L1 5893 7046 -4 1 1379 25 0 0 0 chr6 104118289 104118314 -45398723 + AT_rich Low_complexity Low_complexity 1 25 0 1 1379 21 57 0 0 chr6 104118418 104118453 -45398584 + AT_rich Low_complexity Low_complexity 1 35 0 1 1379 3665 161 41 8 chr6 104118630 104119285 -45397752 + Lx2 LINE L1 6321 6997 0 1 1379 312 307 126 12 chr6 104119573 104119755 -45397282 - HAL1-3A_ME LINE L1 -718 2140 1976 1 1379 11779 171 64 16 chr6 104120256 104120352 -45396685 + Lx LINE L1 3386 3481 -2402 1 1379 633 14 0 0 chr6 104120352 104120426 -45396611 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 1 1379 11779 171 64 16 chr6 104120426 104122636 -45394401 + Lx LINE L1 3482 5808 -75 1 1379 1051 88 0 33 chr6 104122636 104122788 -45394249 + B1_Mm SINE Alu 1 147 0 1 1379 11779 134 5 43 chr6 104122788 104123413 -45393624 + Lx LINE L1 5809 6429 -225 1 1379 2199 81 124 3 chr6 104123413 104123761 -45393276 - RLTR10 LTR ERVK 0 390 1 1 1379 6577 134 5 43 chr6 104123761 104123967 -45393070 + Lx LINE L1 6430 6627 -27 1 1379 3740 87 52 6 chr6 104123967 104124422 -45392615 + L1Md_F2 LINE L1 6023 6475 -107 1 1379 216 0 0 0 chr6 104124422 104124446 -45392591 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 1 1379 3740 87 52 6 chr6 104124446 104124523 -45392514 + L1Md_F2 LINE L1 6476 6580 -2 1 1379 6577 134 5 43 chr6 104124523 104124565 -45392472 + Lx LINE L1 6628 6654 0 1 1379 398 359 14 14 chr6 104124742 104124889 -45392148 - ORR1E LTR MaLR -210 149 3 1 1379 598 253 0 0 chr6 104127720 104127866 -45389171 + B1_Mus1 SINE Alu 2 147 -1 1 1379 329 129 14 0 chr6 104127892 104127962 -45389075 + (CCAA)n Simple_repeat Simple_repeat 1 71 0 1 1379 2404 98 6 11 chr6 104129331 104129680 -45387357 - L1_Mus4 LINE L1 -216 6420 6074 1 1379 1215 126 5 5 chr6 104129681 104129888 -45387149 + L1_Mus4 LINE L1 6424 6630 -6 1 1379 438 20 0 0 chr6 104130387 104130438 -45386599 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1379 206 167 0 53 chr6 104130629 104130686 -45386351 + T-rich Low_complexity Low_complexity 4 57 0 1 1379 219 75 0 86 chr6 104130867 104130925 -45386112 + T-rich Low_complexity Low_complexity 5 57 0 2 1379 1202 232 236 28 chr6 104131028 104131561 -45385476 + Lx7 LINE L1 7053 7696 0 2 1379 225 0 0 0 chr6 104131938 104131963 -45385074 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 1379 681 101 0 0 chr6 104131980 104132079 -45384958 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 2 1379 227 197 49 0 chr6 104132095 104132156 -45384881 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 2 1379 309 333 62 0 chr6 104132769 104132865 -45384172 - RSINE1 SINE B4 -62 103 2 2 1379 204 40 0 0 chr6 104133002 104133027 -45384010 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2 1379 4694 108 18 0 chr6 104133027 104133710 -45383327 - Lx3A LINE L1 -14 6967 6273 2 1379 465 121 0 0 chr6 104133741 104133824 -45383213 + (TC)n Simple_repeat Simple_repeat 1 83 0 2 1379 423 0 0 0 chr6 104133824 104133871 -45383166 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1379 468 317 14 7 chr6 104133875 104134021 -45383016 - RSINE1 SINE B4 -17 148 2 2 1379 459 363 13 62 chr6 104134161 104134387 -45382650 - B4 SINE B4 -76 216 2 2 1379 8479 21 2 0 chr6 104135968 104137620 -45379417 - L1Md_A LINE L1 0 6582 4941 2 1379 21 36 0 0 chr6 104138825 104138853 -45378184 + AT_rich Low_complexity Low_complexity 1 28 0 2 1379 27 29 0 0 chr6 104139439 104139473 -45377564 + AT_rich Low_complexity Low_complexity 1 34 0 2 1379 25 65 0 0 chr6 104139610 104139656 -45377381 + AT_rich Low_complexity Low_complexity 1 46 0 2 1379 426 20 0 0 chr6 104140632 104140683 -45376354 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1379 1235 281 54 56 chr6 104141635 104142312 -45374725 + RMER1B Other Other 9 592 -474 2 1379 285 246 56 63 chr6 104142324 104142450 -45374587 + RLTR15 LTR ERVK 1 125 -234 2 1379 1563 244 115 81 chr6 104142660 104143336 -45373701 + RMER1B Other Other 167 1063 -3 2 1379 2798 58 21 0 chr6 104143459 104143839 -45373198 - RLTR10 LTR ERVK -2 388 1 2 1379 25 51 0 0 chr6 104144297 104144336 -45372701 + AT_rich Low_complexity Low_complexity 1 39 0 2 1379 642 393 32 7 chr6 104144466 104144748 -45372289 + B4A SINE B4 2 290 -2 2 1379 4490 90 6 5 chr6 104145490 104146125 -45370912 - L1Md_F2 LINE L1 -4 6578 5943 2 1379 294 29 0 0 chr6 104146278 104146313 -45370724 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1379 238 114 42 28 chr6 104146475 104146547 -45370490 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 1379 187 140 20 20 chr6 104146600 104146651 -45370386 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1379 272 83 21 0 chr6 104146651 104146699 -45370338 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1379 292 271 14 0 chr6 104146734 104146804 -45370233 - RSINE1 SINE B4 -43 122 52 2 1379 252 59 0 0 chr6 104148305 104148339 -45368698 + (TGGA)n Simple_repeat Simple_repeat 1 34 0 2 1379 3059 68 8 0 chr6 104148427 104148821 -45368216 + MTB LTR MaLR 4 400 0 2 1379 225 0 0 0 chr6 104149111 104149136 -45367901 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1379 270 0 0 0 chr6 104151915 104151945 -45365092 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2 1379 606 93 0 0 chr6 104152310 104152396 -45364641 + (TCTCCC)n Simple_repeat Simple_repeat 3 88 0 2 1379 5463 144 29 18 chr6 104152602 104153589 -45363448 + Lx2 LINE L1 5998 6995 -2 2 1379 882 214 93 77 chr6 104153777 104154142 -45362895 + RLTR19-int LTR ERVK 3599 3969 -2168 2 1379 731 67 42 0 chr6 104154172 104154292 -45362745 - L1Md_F2 LINE L1 -1 6581 6457 2 1379 1863 44 0 0 chr6 104154292 104154517 -45362520 + L1Md_F2 LINE L1 6105 6329 -253 2 1379 1325 244 89 6 chr6 104156065 104156230 -45360807 + ORR1C1 LTR MaLR 1 170 -208 2 1379 621 0 0 0 chr6 104156230 104156299 -45360738 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 2 1379 1325 244 89 6 chr6 104156299 104156471 -45360566 + ORR1C1 LTR MaLR 171 366 -12 2 1379 249 57 0 0 chr6 104156474 104156509 -45360528 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 2 1379 255 202 94 12 chr6 104157314 104157399 -45359638 - L1ME1 LINE L1 -130 6049 5958 2 1379 1031 243 80 58 chr6 104157409 104157785 -45359252 - Lx5 LINE L1 -3 7047 6664 2 1379 231 310 57 100 chr6 104158090 104158230 -45358807 - RLTR41 LTR ERV1 -237 209 76 2 1379 211 212 41 41 chr6 104159602 104159725 -45357312 + (TTATA)n Simple_repeat Simple_repeat 1 123 0 2 1379 1424 41 11 1 chr6 104160238 104160429 -45356608 - L1Md_F3 LINE L1 -313 5858 5626 2 1379 6397 37 10 5 chr6 104160429 104161222 -45355815 + L1Md_F3 LINE L1 5787 6583 -1 2 1379 298 369 52 8 chr6 104161773 104161907 -45355130 - B1F1 SINE Alu -6 143 4 2 1379 291 342 39 46 chr6 104161907 104161923 -45355114 - ID_B1 SINE B4 -3 218 70 2 1379 648 200 28 62 chr6 104161961 104162105 -45354932 + B1_Mus2 SINE Alu 1 139 -8 2 1379 674 327 138 29 chr6 104162279 104162698 -45354339 + Lx8 LINE L1 6828 7292 -181 2 1379 23 0 0 0 chr6 104162847 104162870 -45354167 + AT_rich Low_complexity Low_complexity 1 23 0 2 1379 864 264 5 29 chr6 104163054 104163261 -45353776 - B3 SINE B2 -14 202 1 2 1379 24 0 0 0 chr6 104163341 104163365 -45353672 + AT_rich Low_complexity Low_complexity 1 24 0 2 1379 21 57 0 0 chr6 104163728 104163763 -45353274 + AT_rich Low_complexity Low_complexity 1 35 0 2 1379 289 390 39 67 chr6 104164006 104164363 -45352674 + MLT1C LTR MaLR 1 347 -120 2 1379 1613 153 43 67 chr6 104164574 104164903 -45352134 - ORR1A4 LTR MaLR -8 321 1 2 1379 256 77 0 37 chr6 104166423 104166477 -45350560 + (TTGG)n Simple_repeat Simple_repeat 4 55 0 2 1379 2518 38 198 0 chr6 104166649 104166992 -45350045 + IAPLTR2a LTR ERVK 1 411 0 2 1379 515 318 50 18 chr6 104167435 104167714 -45349323 - RMER1A Other Other -693 337 50 2 1379 255 191 0 0 chr6 104167756 104167819 -45349218 + CT-rich Low_complexity Low_complexity 2 64 0 2 1379 1356 74 0 33 chr6 104167926 104168136 -45348901 - L1Md_F2 LINE L1 0 6582 6380 2 1379 2177 119 221 26 chr6 104168136 104168592 -45348445 - RLTR6_Mm LTR ERV1 -73 581 37 2 1379 64180 15 13 2 chr6 104168700 104176393 -45340644 - RLTR6-int LTR ERV1 0 7778 1 2 1379 2349 120 210 25 chr6 104176393 104176873 -45340164 - RLTR6_Mm LTR ERV1 -49 605 37 2 1379 3327 72 2 0 chr6 104176984 104177439 -45339598 - L1Md_F2 LINE L1 -200 6382 5927 2 1379 239 390 10 39 chr6 104177458 104177562 -45339475 - B4A SINE B4 -69 223 123 2 1379 456 208 0 0 chr6 104177580 104177681 -45339356 + T-rich Low_complexity Low_complexity 1 101 0 2 1379 1040 113 0 0 chr6 104177695 104177836 -45339201 - B1_Mus1 SINE Alu -6 142 2 2 1379 205 135 39 0 chr6 104177905 104177957 -45339080 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1379 243 275 82 62 chr6 104177957 104178054 -45338983 - B3 SINE B2 -116 100 2 2 1379 249 371 11 11 chr6 104178059 104178149 -45338888 - B4A SINE B4 -202 90 1 2 1379 292 304 63 26 chr6 104179414 104179603 -45337434 - L1MA8 LINE L1 -383 5908 5713 2 1379 26 74 0 0 chr6 104180577 104180631 -45336406 + AT_rich Low_complexity Low_complexity 1 54 0 2 1379 513 0 0 0 chr6 104180714 104180771 -45336266 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 1379 189 0 0 0 chr6 104181798 104181819 -45335218 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 1379 927 270 43 27 chr6 104182857 104183158 -45333879 - Lx6 LINE L1 -861 6599 6294 2 1379 662 271 46 76 chr6 104183159 104183360 -45333677 + Lx6 LINE L1 6601 6801 -659 2 1379 336 24 0 0 chr6 104183360 104183401 -45333636 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1379 662 271 46 76 chr6 104183401 104183486 -45333551 + Lx6 LINE L1 6802 6878 -582 2 1379 447 19 0 0 chr6 104183486 104183538 -45333499 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1379 662 271 46 76 chr6 104183538 104183553 -45333484 + Lx6 LINE L1 6879 6894 -566 2 1379 240 86 0 0 chr6 104183554 104183589 -45333448 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 2 1379 869 56 10 73 chr6 104183589 104183781 -45333256 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 2 1379 795 147 0 0 chr6 104183816 104183993 -45333044 + (GA)n Simple_repeat Simple_repeat 2 178 0 2 1379 1266 289 6 6 chr6 104184050 104184381 -45332656 + Lx6 LINE L1 6994 7324 -136 2 1379 1105 76 7 0 chr6 104184397 104184542 -45332495 - B1_Mm SINE Alu -1 146 1 2 1379 1544 91 15 84 chr6 104184560 104184823 -45332214 - L1_Mus2 LINE L1 0 6566 6322 2 1379 332 265 6 50 chr6 104184823 104184982 -45332055 + Lx6 LINE L1 7308 7459 -1 2 1379 417 319 40 52 chr6 104186084 104186560 -45330477 - L1M3 LINE L1 -535 5777 5308 2 1379 689 124 210 6 chr6 104186574 104186736 -45330301 + Lx LINE L1 6456 6650 -4 2 1379 949 342 82 35 chr6 104186764 104186833 -45330204 - Lx8 LINE L1 -58 7415 7347 2 1379 258 32 0 0 chr6 104186833 104186864 -45330173 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1379 1229 41 0 0 chr6 104186865 104187012 -45330025 - B1_Mm SINE Alu 0 147 1 2 1379 949 342 82 35 chr6 104187012 104187825 -45329212 - Lx8 LINE L1 -127 7346 6489 2 1379 285 321 86 0 chr6 104187896 104188036 -45329001 - Lx8 LINE L1 -930 6543 6392 2 1379 735 320 71 49 chr6 104188201 104189495 -45327542 - L1M3 LINE L1 -1015 5125 3803 2 1379 325 333 39 34 chr6 104189829 104190034 -45327003 - L1_Mur3 LINE L1 -931 5212 5007 2 1379 3247 194 83 39 chr6 104190040 104190903 -45326134 - Lx2B LINE L1 -20 6980 6080 2 1379 324 318 83 0 chr6 104191006 104191138 -45325899 - L1_Mur3 LINE L1 -1208 4935 4793 2 1379 667 224 191 127 chr6 104191166 104191750 -45325287 - RMER12 LTR ERVK -275 1573 906 2 1379 335 311 91 36 chr6 104191929 104192149 -45324888 - L1ME3A LINE L1 -303 5870 5639 2 1379 245 128 21 0 chr6 104192171 104192218 -45324819 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1379 265 291 19 19 chr6 104192222 104192327 -45324710 + RMER12 LTR ERVK 729 833 -489 2 1379 635 133 18 0 chr6 104192342 104192455 -45324582 + (CATA)n Simple_repeat Simple_repeat 2 116 0 2 1379 775 290 75 85 chr6 104192587 104193401 -45323636 - RMER12 LTR ERVK -996 812 3 2 1379 252 0 0 0 chr6 104193535 104193563 -45323474 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1379 467 290 120 32 chr6 104193647 104194116 -45322921 - L1_Mur3 LINE L1 -1371 4506 3975 2 1379 386 53 0 17 chr6 104194116 104194174 -45322863 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1379 467 311 128 14 chr6 104194174 104194404 -45322633 - L1_Mur3 LINE L1 -1906 3974 3726 2 1379 8083 123 48 6 chr6 104194578 104196211 -45320826 - Lx3A LINE L1 -6 6975 5253 2 1379 2308 74 20 12 chr6 104196207 104196551 -45320486 + Lx3A LINE L1 4833 5179 -707 2 1379 203 94 62 15 chr6 104196551 104196616 -45320421 + A-rich Low_complexity Low_complexity 3 70 0 2 1379 463 79 0 26 chr6 104196628 104196706 -45320331 + L1_Mur1 LINE L1 5193 5268 -618 2 1379 274 100 33 0 chr6 104196776 104196836 -45320201 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 2 1379 322 332 17 103 chr6 104197190 104197244 -45319793 - L1MD2 LINE L1 -89 6270 6223 2 1379 1891 216 47 12 chr6 104197244 104197651 -45319386 - MTC LTR MaLR 0 421 1 2 1379 322 332 17 103 chr6 104197651 104197828 -45319209 - L1MD2 LINE L1 -137 6222 6059 2 1379 215 411 16 39 chr6 104198430 104198559 -45318478 + L2b LINE L2 3245 3370 -5 2 1379 1445 296 19 8 chr6 104198665 104199146 -45317891 - Lx6 LINE L1 -26 7434 6949 2 1379 364 250 0 65 chr6 104200046 104200153 -45316884 + MTEa LTR MaLR 8 107 -272 2 1379 216 0 0 0 chr6 104200306 104200330 -45316707 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 3 1379 342 395 37 11 chr6 104200334 104200521 -45316516 + MT2A LTR ERVL 279 470 -63 3 1379 811 204 6 62 chr6 104200561 104200739 -45316298 - URR1A DNA MER1_type 0 226 59 3 1379 26 30 0 0 chr6 104200810 104200843 -45316194 + AT_rich Low_complexity Low_complexity 1 33 0 3 1379 22 35 0 0 chr6 104201015 104201044 -45315993 + AT_rich Low_complexity Low_complexity 1 29 0 3 1379 1506 172 21 12 chr6 104201249 104201576 -45315461 - L1_Mur3 LINE L1 -686 5194 4864 3 1379 1007 144 0 11 chr6 104201576 104201758 -45315279 + CT-rich Low_complexity Low_complexity 1 180 0 3 1379 2360 225 50 9 chr6 104201782 104201855 -45315182 + Lx6 LINE L1 5191 5263 -617 3 1379 207 0 0 0 chr6 104201855 104201878 -45315159 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 172 3724 234 60 10 chr6 104201878 104203060 -45313977 + Lx6 LINE L1 5264 6502 -958 3 1380 742 73 9 9 chr6 104203060 104203171 -45313866 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 3 1380 3724 243 70 10 chr6 104203171 104203341 -45313696 + Lx6 LINE L1 6503 6706 -754 3 1380 337 226 0 28 chr6 104203351 104203460 -45313577 + Lx6 LINE L1 7355 7460 0 3 1380 417 20 0 0 chr6 104203832 104203882 -45313155 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1380 305 354 39 33 chr6 104204291 104204472 -45312565 - MLT1C LTR MaLR -244 223 42 3 1380 1004 100 7 0 chr6 104205289 104205429 -45311608 + B1_Mus1 SINE Alu 7 147 -1 3 1380 1050 144 0 0 chr6 104205431 104205611 -45311426 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 3 1380 968 151 0 6 chr6 104205633 104205775 -45311262 + polypurine Low_complexity Low_complexity 1 142 0 3 1380 1245 96 0 0 chr6 104205775 104205953 -45311084 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 3 1380 968 151 0 6 chr6 104205953 104205990 -45311047 + polypurine Low_complexity Low_complexity 143 179 0 3 1380 850 275 4 8 chr6 104206247 104206485 -45310552 + Lx9 LINE L1 7196 7432 -212 3 1380 423 0 0 0 chr6 104206517 104206564 -45310473 + (TATAA)n Simple_repeat Simple_repeat 1 47 0 3 1380 1163 63 0 0 chr6 104206692 104206834 -45310203 - B1_Mus1 SINE Alu -6 142 1 3 1380 936 90 0 0 chr6 104206929 104207062 -45309975 - L1_Mus1 LINE L1 0 6567 6435 3 1380 36253 31 1 0 chr6 104207072 104214415 -45302622 - L1Md_T LINE L1 0 6585 1 3 1380 264 111 0 0 chr6 104214795 104214840 -45302197 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1380 263 346 30 36 chr6 104215064 104215229 -45301808 + MER5A1 DNA MER1_type 2 165 -1 3 1380 1471 212 131 32 chr6 104215469 104215844 -45301193 + MTC LTR MaLR 10 421 0 3 1380 293 256 41 72 chr6 104215846 104215943 -45301094 - MTEa LTR MaLR -285 94 1 3 1380 1955 328 98 19 chr6 104215949 104216786 -45300251 + MTEa-int LTR MaLR 666 1568 -12 3 1380 955 285 74 71 chr6 104216787 104217165 -45299872 + MTEa LTR MaLR 1 379 0 3 1380 630 278 11 32 chr6 104217649 104217835 -45299202 - B3A SINE B2 -16 182 1 3 1380 470 328 79 36 chr6 104218407 104218736 -45298301 - L1MC3 LINE L1 -87 7698 7356 3 1380 236 255 68 48 chr6 104218825 104218928 -45298109 - B1F SINE Alu -40 109 5 3 1380 316 349 45 32 chr6 104218857 104219014 -45298023 - B4A SINE B4 -131 161 3 3 1380 419 331 61 61 chr6 104219014 104219410 -45297627 - L1MC3 LINE L1 -415 7370 6975 3 1380 6180 145 7 8 chr6 104219547 104220600 -45296437 - Lx LINE L1 -16 6638 5587 3 1380 988 119 7 0 chr6 104222373 104222516 -45294521 + B1_Mus1 SINE Alu 2 145 -3 3 1380 197 33 0 32 chr6 104222521 104222552 -45294485 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1380 428 93 13 0 chr6 104222921 104222996 -45294041 + (GAAA)n Simple_repeat Simple_repeat 3 78 0 3 1380 1475 269 47 12 chr6 104223828 104224321 -45292716 - Lx9 LINE L1 -1 7643 7134 3 1380 1739 249 122 13 chr6 104224325 104224849 -45292188 + Lx2B LINE L1 6415 6995 -5 3 1380 1062 255 21 17 chr6 104224883 104225170 -45291867 - Lx9 LINE L1 -516 7128 6841 3 1380 27 29 0 0 chr6 104225425 104225459 -45291578 + AT_rich Low_complexity Low_complexity 1 34 0 3 1380 313 236 54 18 chr6 104225716 104225828 -45291209 + Tigger7 DNA MER2_type 2306 2421 -70 3 1380 1467 240 48 14 chr6 104226371 104226726 -45290311 + ORR1B2 LTR MaLR 1 367 0 3 1380 225 225 73 24 chr6 104227843 104227925 -45289112 - Charlie9 DNA MER1_type -2103 654 569 3 1380 25 0 0 0 chr6 104228206 104228231 -45288806 + AT_rich Low_complexity Low_complexity 1 25 0 3 1380 640 264 142 20 chr6 104229148 104229345 -45287692 + RMER21B LTR ERV1 347 567 -275 3 1380 46 33 0 0 chr6 104230025 104230085 -45286952 + AT_rich Low_complexity Low_complexity 1 60 0 3 1380 4370 152 16 15 chr6 104230086 104230840 -45286197 - Lx3B LINE L1 -1 6972 6218 3 1380 21 57 0 0 chr6 104231641 104231676 -45285361 + AT_rich Low_complexity Low_complexity 1 35 0 3 1380 568 189 140 12 chr6 104232956 104233127 -45283910 - Lx7 LINE L1 -146 7550 7358 3 1380 484 259 0 0 chr6 104233198 104233306 -45283731 - Lx7 LINE L1 -329 7367 7260 3 1380 5174 179 39 64 chr6 104233423 104234022 -45283015 - L1_Mur3 LINE L1 -9 5871 5244 3 1380 2235 115 6 22 chr6 104234022 104234386 -45282651 - Lx LINE L1 -8 6646 6289 3 1380 5174 179 39 64 chr6 104234386 104234448 -45282589 - L1_Mur3 LINE L1 -637 5243 5237 3 1380 218 32 0 31 chr6 104234448 104234480 -45282557 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1380 5174 179 39 64 chr6 104234480 104235064 -45281973 - L1_Mur3 LINE L1 -644 5236 4657 3 1380 30 69 0 0 chr6 104235069 104235127 -45281910 + AT_rich Low_complexity Low_complexity 1 58 0 3 1380 36 40 0 0 chr6 104235932 104235982 -45281055 + AT_rich Low_complexity Low_complexity 1 50 0 3 1380 788 137 0 7 chr6 104236374 104236514 -45280523 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 3 1380 807 265 106 33 chr6 104236640 104236913 -45280124 - MTEa LTR MaLR -4 375 83 3 1380 1040 271 0 20 chr6 104238331 104238583 -45278454 + MTC LTR MaLR 175 421 0 3 1380 4939 177 14 3 chr6 104238627 104239656 -45277381 - Lx2 LINE L1 -535 6462 5426 3 1380 514 119 47 12 chr6 104239651 104239736 -45277301 - Lx3_Mus LINE L1 -787 6222 6135 3 1380 4644 101 9 5 chr6 104239728 104240413 -45276624 + Lx3_Mus LINE L1 5224 5907 -1102 3 1380 270 0 0 0 chr6 104240413 104240443 -45276594 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 3 1380 3384 122 44 8 chr6 104240443 104240645 -45276392 + Lx3_Mus LINE L1 5908 6130 -879 3 1380 592 148 20 0 chr6 104240640 104240741 -45276296 - Lx2 LINE L1 -507 5370 5268 3 1380 29 0 0 0 chr6 104240830 104240859 -45276178 + AT_rich Low_complexity Low_complexity 1 29 0 3 1380 199 190 35 0 chr6 104241054 104241112 -45275925 + GA-rich Low_complexity Low_complexity 2 61 0 3 1380 540 0 0 0 chr6 104241322 104241382 -45275655 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1380 627 305 14 24 chr6 104242204 104242412 -45274625 - B3 SINE B2 -3 213 8 3 1380 393 138 85 150 chr6 104242857 104243055 -45273982 + MT2B LTR ERVL 64 257 -327 3 1380 799 173 0 15 chr6 104242952 104243087 -45273950 + B1_Mur4 SINE Alu 5 137 -13 3 1380 372 22 0 0 chr6 104243451 104243496 -45273541 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1380 663 260 79 10 chr6 104244212 104244414 -45272623 - B3 SINE B2 0 216 1 3 1380 3718 130 10 24 chr6 104245012 104245030 -45272007 - Lx3A LINE L1 0 6981 6969 3 1380 536 77 0 13 chr6 104245030 104245109 -45271928 + (CTTA)n Simple_repeat Simple_repeat 2 79 0 3 1380 3718 130 10 24 chr6 104245109 104245705 -45271332 - Lx3A LINE L1 -13 6968 6376 3 1380 279 0 0 0 chr6 104248398 104248429 -45268608 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1380 223 331 81 71 chr6 104248765 104248963 -45268074 + L2 LINE L2 1987 2186 -1233 3 1380 207 0 0 0 chr6 104249358 104249381 -45267656 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 3 1380 673 33 22 0 chr6 104249640 104249732 -45267305 + (TC)n Simple_repeat Simple_repeat 1 94 0 3 1380 307 300 22 50 chr6 104249753 104249932 -45267105 + CT-rich Low_complexity Low_complexity 6 179 0 3 1380 246 216 19 29 chr6 104252226 104252331 -45264706 - Lx9 LINE L1 -84 7560 7457 3 1380 222 235 0 0 chr6 104252458 104252509 -45264528 + T-rich Low_complexity Low_complexity 1 51 0 3 1380 233 375 10 0 chr6 104253093 104253189 -45263848 - MIRb SINE MIR -8 260 164 3 1380 1727 123 41 31 chr6 104254123 104254442 -45262595 + RLTRETN_Mm LTR ERVK 1 322 0 3 1380 1221 27 0 14 chr6 104256675 104256823 -45260214 + B1_Mus2 SINE Alu 1 146 -1 3 1380 215 100 0 48 chr6 104256824 104256866 -45260171 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 3 1380 639 48 0 0 chr6 104256944 104257027 -45260010 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 3 1380 226 374 45 6 chr6 104257170 104257326 -45259711 + MIR SINE MIR 14 175 -87 3 1380 25 0 0 0 chr6 104257874 104257899 -45259138 + AT_rich Low_complexity Low_complexity 1 25 0 3 1380 306 129 0 0 chr6 104257970 104258032 -45259005 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 1380 25 51 0 0 chr6 104260594 104260633 -45256404 + AT_rich Low_complexity Low_complexity 1 39 0 3 1380 510 350 24 33 chr6 104260973 104261183 -45255854 - B4 SINE B4 -14 278 71 3 1380 1040 232 7 60 chr6 104262067 104262365 -45254672 - Lx6 LINE L1 0 7460 7179 3 1380 614 221 38 15 chr6 104262384 104262495 -45254542 + B1_Mus2 SINE Alu 12 121 -26 3 1380 594 0 0 0 chr6 104262495 104262561 -45254476 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 3 1380 614 221 38 15 chr6 104262561 104262582 -45254455 + B1_Mus2 SINE Alu 122 145 -2 3 1380 210 171 0 0 chr6 104263003 104263044 -45253993 + T-rich Low_complexity Low_complexity 1 41 0 3 1380 3274 193 37 33 chr6 104264317 104265015 -45252022 - Lx3C LINE L1 -2 6974 6274 3 1380 1033 83 7 14 chr6 104265536 104265683 -45251354 - B1_Mm SINE Alu 0 147 2 3 1380 345 198 102 17 chr6 104265693 104265811 -45251226 - Lx2B LINE L1 -4 6996 6869 3 1380 460 338 14 7 chr6 104266014 104266154 -45250883 + RSINE1 SINE B4 3 143 -22 3 1380 301 267 0 9 chr6 104266167 104266273 -45250764 + L1MB3 LINE L1 6077 6181 -2 3 1380 422 345 45 8 chr6 104266923 104267189 -45249848 - MER63D DNA AcHobo -748 313 38 3 1380 796 299 44 9 chr6 104267379 104267605 -45249432 + MTE2b LTR MaLR 1 234 -145 3 1380 1771 135 12 22 chr6 104267605 104267924 -45249113 + L1_Mus3 LINE L1 6320 6635 -3 3 1380 576 65 0 0 chr6 104267939 104268016 -45249021 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1380 449 252 45 9 chr6 104268065 104268177 -45248860 + MTE2b LTR MaLR 245 360 -19 3 1380 398 314 14 21 chr6 104269991 104270134 -45246903 - B1_Mur1 SINE Alu -6 143 2 3 1380 197 292 54 33 chr6 104270233 104270325 -45246712 + L3 LINE CR1 4240 4333 -156 4 1380 5553 134 34 29 chr6 104270922 104272158 -45244879 + L1Md_F2 LINE L1 5748 6996 -1 4 1380 11991 14 0 1 chr6 104273533 104275653 -45241384 - L1Md_T LINE L1 0 6582 4495 4 1380 373 281 103 5 chr6 104275653 104275778 -45241259 + B1_Mur2 SINE Alu 5 136 -13 4 1380 393 22 0 0 chr6 104275778 104275824 -45241213 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1380 327 307 400 39 chr6 104279934 104280208 -45236829 + MLT1B LTR MaLR 11 383 -7 4 1380 294 29 0 0 chr6 104280547 104280582 -45236455 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 1380 416 29 0 54 chr6 104280722 104280796 -45236241 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 4 1380 359 113 0 16 chr6 104281079 104281142 -45235895 + (GGGA)n Simple_repeat Simple_repeat 1 62 0 4 1380 2765 70 65 0 chr6 104281361 104281733 -45235304 - MTA_Mm LTR MaLR 0 396 1 4 1380 1499 215 24 115 chr6 104282192 104282644 -45234393 + RMER15 LTR ERVL 1 411 -164 4 1380 434 108 0 13 chr6 104282644 104282719 -45234318 + (TTTA)n Simple_repeat Simple_repeat 2 75 0 4 1380 4567 78 7 0 chr6 104282756 104283349 -45233688 - L1_Mus2 LINE L1 -1 6565 5969 4 1380 6654 133 18 8 chr6 104283349 104285035 -45232002 - L1Md_F LINE L1 -3506 2377 675 4 1380 326 302 69 138 chr6 104285054 104285242 -45231795 + RMER15 LTR ERVL 401 575 0 4 1380 468 346 139 7 chr6 104285242 104285514 -45231523 - MER89 LTR ERV1 -82 477 170 4 1380 1194 316 52 28 chr6 104285534 104286094 -45230943 - Lx6 LINE L1 -23 7437 6486 4 1380 906 298 24 14 chr6 104286090 104286503 -45230534 + Lx5 LINE L1 6164 6795 -665 4 1380 513 317 86 46 chr6 104287351 104287526 -45229511 - B4 SINE B4 -2 290 109 4 1380 180 0 0 0 chr6 104287542 104287562 -45229475 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1380 993 82 0 0 chr6 104287562 104287719 -45229318 + (GA)n Simple_repeat Simple_repeat 1 158 0 4 1380 332 143 0 14 chr6 104287734 104287805 -45229232 + GA-rich Low_complexity Low_complexity 2 71 0 4 1380 891 291 91 75 chr6 104288327 104288658 -45228379 + MTEb LTR MaLR 44 379 0 4 1380 500 0 0 16 chr6 104290727 104290788 -45226249 + (TTTCC)n Simple_repeat Simple_repeat 1 60 0 4 1380 1539 17 0 0 chr6 104290788 104290966 -45226071 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 4 1380 846 139 11 17 chr6 104290967 104291142 -45225895 + C-rich Low_complexity Low_complexity 4 177 0 4 1380 378 0 0 0 chr6 104291142 104291184 -45225853 + (TTCTC)n Simple_repeat Simple_repeat 4 45 0 4 1380 1157 82 12 6 chr6 104291184 104291356 -45225681 - L1_Mus3 LINE L1 -17 6621 6449 4 1380 1656 195 35 15 chr6 104291397 104291735 -45225302 - Lx2B LINE L1 0 7000 6656 4 1380 263 103 0 0 chr6 104291736 104291775 -45225262 - Lx2B LINE L1 -609 6391 6353 4 1380 1143 76 0 0 chr6 104291830 104291974 -45225063 + B1_Mm SINE Alu 1 144 -3 4 1380 207 0 0 0 chr6 104291974 104291997 -45225040 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1380 272 300 30 30 chr6 104293148 104293282 -45223755 + GA-rich Low_complexity Low_complexity 2 135 0 4 1380 25 51 0 0 chr6 104293637 104293676 -45223361 + AT_rich Low_complexity Low_complexity 1 39 0 4 1380 3617 130 36 0 chr6 104293682 104294236 -45222801 - Lx2 LINE L1 0 6997 6424 4 1380 219 376 106 0 chr6 104294540 104294681 -45222356 - MIR SINE MIR -71 191 36 4 1380 807 137 0 0 chr6 104295667 104295828 -45221209 + (TC)n Simple_repeat Simple_repeat 2 162 0 4 1380 221 85 0 60 chr6 104296170 104296220 -45220817 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1380 200 339 0 0 chr6 104296279 104296338 -45220699 + CT-rich Low_complexity Low_complexity 2 60 0 4 1380 204 67 0 0 chr6 104296689 104296719 -45220318 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1380 2563 78 27 35 chr6 104296813 104297187 -45219850 + L1Md_F2 LINE L1 6212 6582 0 4 1380 228 35 0 0 chr6 104297478 104297507 -45219530 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1380 6660 36 5 7 chr6 104297507 104298359 -45218678 - L1Md_F3 LINE L1 -18 6566 5732 4 1380 613 239 165 11 chr6 104298388 104298654 -45218383 + Lx9 LINE L1 7337 7643 -1 4 1380 243 274 0 0 chr6 104298690 104298741 -45218296 + MLT1G1 LTR MaLR 241 291 -288 4 1380 248 0 0 30 chr6 104298994 104299027 -45218010 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1380 349 333 8 25 chr6 104299279 104299399 -45217638 - B4 SINE B4 -166 126 9 4 1380 453 66 0 0 chr6 104300214 104300275 -45216762 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1380 663 336 44 8 chr6 104300275 104300524 -45216513 - B4A SINE B4 -34 258 1 4 1380 1201 68 0 0 chr6 104300786 104300934 -45216103 + B1_Mus1 SINE Alu 1 148 0 4 1380 450 53 0 0 chr6 104300936 104300993 -45216044 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 4 1380 924 114 0 0 chr6 104301005 104301145 -45215892 + (GAGAA)n Simple_repeat Simple_repeat 1 140 0 4 1380 397 302 77 31 chr6 104301166 104301361 -45215676 + B3A SINE B2 6 209 -7 4 1380 475 289 118 41 chr6 104301363 104301558 -45215479 + B3 SINE B2 3 212 -4 4 1380 245 358 95 0 chr6 104302596 104302691 -45214346 + AmnSINE1 SINE SINE 2 105 -470 4 1380 316 271 20 50 chr6 104302868 104302969 -45214068 - B3 SINE B2 0 216 119 4 1380 1038 275 23 68 chr6 104303022 104303330 -45213707 - MTD LTR MaLR -125 294 1 4 1380 377 338 20 13 chr6 104304072 104304222 -45212815 - MER58A DNA MER1_type -47 177 27 4 1380 22 0 0 0 chr6 104304268 104304290 -45212747 + AT_rich Low_complexity Low_complexity 1 22 0 4 1380 465 276 46 23 chr6 104304970 104305100 -45211937 + ETnERV2-int LTR ERVK 7070 7202 -204 4 1380 288 0 0 0 chr6 104305997 104306029 -45211008 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1380 39405 7 0 0 chr6 104306059 104312642 -45204395 - L1Md_A LINE L1 0 6582 1 4 1380 503 250 98 24 chr6 104313195 104313318 -45203719 + B3 SINE B2 1 132 -84 4 1380 651 78 0 0 chr6 104313504 104313594 -45203443 + (TA)n Simple_repeat Simple_repeat 2 91 0 4 1380 6807 83 12 5 chr6 104313798 104315319 -45201718 - L1_Mus2 LINE L1 0 6566 5037 4 1380 338 353 26 19 chr6 104316038 104316194 -45200843 + MLT1B LTR MaLR 1 157 -233 4 1380 25 0 0 0 chr6 104316498 104316523 -45200514 + AT_rich Low_complexity Low_complexity 1 25 0 4 1380 428 281 109 15 chr6 104317339 104317541 -45199496 + MER2 DNA MER2_type 59 279 -66 4 1380 446 127 58 29 chr6 104317742 104317816 -45199221 + polypurine Low_complexity Low_complexity 3 77 0 4 1380 928 125 6 6 chr6 104317816 104317977 -45199060 + (GGAGA)n Simple_repeat Simple_repeat 1 161 0 4 1380 446 127 58 29 chr6 104317977 104318040 -45198997 + polypurine Low_complexity Low_complexity 78 144 0 4 1380 300 345 17 42 chr6 104318419 104318537 -45198500 - MIRb SINE MIR -119 149 35 4 1380 1896 173 111 132 chr6 104321341 104321433 -45195604 - RMER1A Other Other -8 1022 869 4 1380 405 0 0 0 chr6 104321433 104321478 -45195559 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1380 1896 173 111 132 chr6 104321478 104321687 -45195350 - RMER1A Other Other -162 868 732 4 1380 1151 68 7 0 chr6 104321687 104321834 -45195203 - B1_Mus1 SINE Alu 0 148 1 4 1380 1896 173 111 132 chr6 104321834 104322109 -45194928 - RMER1A Other Other -299 731 457 4 1380 345 141 0 0 chr6 104322177 104322248 -45194789 + (TATG)n Simple_repeat Simple_repeat 1 71 0 4 1380 239 68 68 0 chr6 104322561 104322605 -45194432 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 4 1380 206 174 0 21 chr6 104322954 104323001 -45194036 + T-rich Low_complexity Low_complexity 3 48 0 4 1380 192 77 0 0 chr6 104323159 104323185 -45193852 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 1380 625 181 77 35 chr6 104323669 104323812 -45193225 - B1_Mur3 SINE Alu 0 149 1 4 1380 401 315 54 20 chr6 104324501 104324705 -45192332 - Lx8 LINE L1 -70 7403 7193 4 1380 345 272 58 85 chr6 104324986 104325297 -45191740 - L1MC LINE L1 -2979 3167 2901 4 1380 543 307 9 9 chr6 104325297 104325511 -45191526 - B3 SINE B2 0 216 3 4 1380 340 295 51 131 chr6 104325511 104325651 -45191386 - L1MC LINE L1 -3246 2900 2754 4 1380 2224 149 30 21 chr6 104325658 104326084 -45190953 - Lx4B LINE L1 -148 5729 5300 4 1380 346 156 0 0 chr6 104326081 104326145 -45190892 + Lx4B LINE L1 5747 5810 -1248 4 1380 1062 103 14 0 chr6 104326147 104326292 -45190745 + B1_Mm SINE Alu 1 147 0 4 1380 180 176 0 0 chr6 104326292 104326326 -45190711 + A-rich Low_complexity Low_complexity 1 34 0 4 1380 1421 34 5 5 chr6 104326327 104326537 -45190500 + (GAA)n Simple_repeat Simple_repeat 1 210 0 4 1380 646 104 0 0 chr6 104326537 104326633 -45190404 + Lx5 LINE L1 5803 5898 -1152 4 1380 2364 95 40 13 chr6 104326640 104327036 -45190001 - MusHAL1 LINE L1 -1268 1444 1038 4 1380 5722 96 11 2 chr6 104327036 104327847 -45189190 + L1_Mus3 LINE L1 5815 6632 -6 4 1380 275 184 0 73 chr6 104327877 104327959 -45189078 + Lx5 LINE L1 5893 5968 -1082 4 1380 300 194 0 46 chr6 104327950 104328015 -45189022 + Lx5 LINE L1 6677 6738 -312 4 1380 4047 214 97 6 chr6 104328028 104329019 -45188018 + Lx5 LINE L1 5965 7045 -5 4 172 32688 30 0 0 chr6 104329141 104335592 -45181445 - L1Md_T LINE L1 0 6585 38 4 1381 303 28 0 0 chr6 104335661 104335697 -45181340 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1381 277 322 36 36 chr6 104335918 104336137 -45180900 - L1M5 LINE L1 -3795 2351 2133 4 1381 329 314 18 97 chr6 104336333 104336446 -45180591 - B1_Mur4 SINE Alu -16 104 1 4 1381 521 329 75 49 chr6 104336453 104336718 -45180319 - Lx8 LINE L1 -132 7341 7070 4 1381 1662 302 114 19 chr6 104336773 104337179 -45179858 - Lx8 LINE L1 -493 6980 6519 4 1381 438 20 0 0 chr6 104337179 104337230 -45179807 + (TTA)n Simple_repeat Simple_repeat 2 52 0 4 1381 1662 302 114 19 chr6 104337230 104337505 -45179532 - Lx8 LINE L1 -955 6518 6234 4 1381 2748 86 34 2 chr6 104338178 104338379 -45178658 - BGLII LTR ERVK 0 421 219 4 1381 585 0 0 0 chr6 104338379 104338444 -45178593 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1381 2748 86 34 2 chr6 104338444 104338650 -45178387 - BGLII LTR ERVK -203 218 2 4 1381 293 261 98 40 chr6 104338722 104338976 -45178061 + RMER20B LTR ERVK 280 607 -20 4 1381 916 231 33 24 chr6 104340746 104340959 -45176078 - B3 SINE B2 -1 215 1 4 1381 2162 125 30 6 chr6 104341247 104341585 -45175452 - Lx2A1 LINE L1 0 7008 6663 4 1381 270 345 114 7 chr6 104341809 104341958 -45175079 + MIRb SINE MIR 90 254 -14 5 1381 213 241 190 0 chr6 104342900 104342979 -45174058 - MIR SINE MIR -56 206 113 5 1381 3350 119 31 2 chr6 104343035 104343558 -45173479 + Lx3A LINE L1 6442 6979 -2 5 1381 531 0 0 0 chr6 104343569 104343628 -45173409 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 5 1381 896 146 0 6 chr6 104343852 104344031 -45173006 + GA-rich Low_complexity Low_complexity 3 180 0 5 1381 1303 246 33 23 chr6 104344044 104344443 -45172594 + L1_Mur3 LINE L1 4602 5004 -876 5 1381 334 353 53 23 chr6 104344441 104344612 -45172425 + Lx7 LINE L1 7019 7194 -502 5 1381 262 221 42 0 chr6 104344692 104344787 -45172250 + T-rich Low_complexity Low_complexity 3 101 0 5 1381 2419 265 76 43 chr6 104344902 104345718 -45171319 + RCHARR1 DNA MER1_type 131 973 -1 5 1381 375 308 110 43 chr6 104345993 104346156 -45170881 - ID_B1 SINE B4 -44 180 7 5 1381 575 62 12 0 chr6 104346226 104346306 -45170731 + (TAAA)n Simple_repeat Simple_repeat 2 82 0 5 1381 270 377 132 0 chr6 104346505 104346664 -45170373 + Tigger7 DNA MER2_type 42 221 -2270 5 1381 294 286 99 80 chr6 104346683 104346884 -45170153 + Tigger7 DNA MER2_type 2263 2467 -24 5 1381 220 195 0 0 chr6 104347375 104347416 -45169621 + CT-rich Low_complexity Low_complexity 1 41 0 5 1381 232 175 50 40 chr6 104349106 104349207 -45167830 + (TA)n Simple_repeat Simple_repeat 2 103 0 5 1381 1526 201 62 36 chr6 104349583 104349939 -45167098 + ORR1B2 LTR MaLR 1 365 -2 5 1381 34 24 0 0 chr6 104350403 104350444 -45166593 + AT_rich Low_complexity Low_complexity 1 41 0 5 1381 6357 57 5 1 chr6 104350724 104351529 -45165508 + L1Md_F2 LINE L1 5775 6582 0 5 1381 706 154 292 0 chr6 104351554 104351771 -45165266 + Lx7 LINE L1 6805 7085 -611 5 1381 972 115 47 0 chr6 104351950 104352098 -45164939 + B2_Mm2 SINE B2 1 155 -40 5 1381 180 0 0 0 chr6 104352098 104352118 -45164919 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 5 1381 422 49 16 0 chr6 104354418 104354479 -45162558 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 1381 21 0 0 0 chr6 104354649 104354670 -45162367 + AT_rich Low_complexity Low_complexity 1 21 0 5 1381 180 0 0 0 chr6 104354849 104354869 -45162168 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1381 1013 120 6 0 chr6 104355201 104355368 -45161669 - ORR1A2-int LTR MaLR -1795 168 1 5 1381 2150 142 0 0 chr6 104355368 104355691 -45161346 - ORR1A2 LTR MaLR 0 327 5 5 1381 879 251 53 0 chr6 104355799 104356046 -45160991 + Lx9 LINE L1 7257 7516 -128 5 1381 231 194 48 0 chr6 104356046 104356108 -45160929 + (TATATG)n Simple_repeat Simple_repeat 3 67 0 5 1381 22 56 0 0 chr6 104356237 104356273 -45160764 + AT_rich Low_complexity Low_complexity 1 36 0 5 1381 1929 255 95 62 chr6 104356581 104357470 -45159567 - RMER17B LTR ERVK -70 888 1 5 1381 434 264 9 21 chr6 104357470 104357605 -45159432 - B3A SINE B2 -65 133 3 5 1381 588 200 0 0 chr6 104358004 104358144 -45158893 + (CTA)n Simple_repeat Simple_repeat 1 140 0 5 1381 189 0 0 0 chr6 104358142 104358163 -45158874 + (TAA)n Simple_repeat Simple_repeat 1 21 0 5 1381 309 26 0 0 chr6 104358616 104358654 -45158383 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 5 1381 278 194 0 14 chr6 104359009 104359082 -45157955 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 5 1381 257 122 102 54 chr6 104359104 104359251 -45157786 + (TAGA)n Simple_repeat Simple_repeat 4 157 0 5 1381 186 103 0 0 chr6 104359251 104359280 -45157757 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1381 225 0 0 0 chr6 104360640 104360665 -45156372 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1381 502 278 161 33 chr6 104360665 104360849 -45156188 + B4A SINE B4 81 291 -1 5 1381 345 277 0 0 chr6 104361376 104361459 -45155578 + B1F SINE Alu 66 148 -1 5 1381 648 225 27 34 chr6 104361658 104361805 -45155232 + B1_Mur2 SINE Alu 2 147 -2 5 1381 396 0 0 0 chr6 104361850 104361894 -45155143 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1381 679 323 14 13 chr6 104363699 104363904 -45153133 - B3A SINE B2 -21 195 1 5 1381 330 143 0 0 chr6 104363951 104364028 -45153009 + (A)n Simple_repeat Simple_repeat 1 77 0 5 1381 1793 126 36 0 chr6 104364208 104364510 -45152527 + Lx3_Mus LINE L1 6689 7001 -8 5 1381 363 136 0 0 chr6 104364687 104364746 -45152291 + (GGA)n Simple_repeat Simple_repeat 3 61 0 5 1381 21 0 0 0 chr6 104367157 104367178 -45149859 + AT_rich Low_complexity Low_complexity 1 21 0 5 1381 25 51 0 0 chr6 104367417 104367456 -45149581 + AT_rich Low_complexity Low_complexity 1 39 0 5 1381 486 75 0 0 chr6 104367605 104367672 -45149365 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1381 238 254 33 17 chr6 104367677 104367737 -45149300 - ID SINE ID -154 70 10 5 1381 41 0 0 0 chr6 104368076 104368117 -45148920 + AT_rich Low_complexity Low_complexity 1 41 0 5 1381 5066 110 20 3 chr6 104368923 104369668 -45147369 - L1_Mus1 LINE L1 -190 5693 4936 5 1381 6747 51 32 0 chr6 104369677 104370525 -45146512 + L1_Mus1 LINE L1 5693 6567 0 5 1381 254 404 97 35 chr6 104370604 104370830 -45146207 - LTR16C LTR ERVL -175 314 75 5 1381 310 242 116 67 chr6 104371600 104371764 -45145273 - L1MB5 LINE L1 -200 5974 5803 5 1381 878 338 25 28 chr6 104371932 104372328 -45144709 + Lx7 LINE L1 6341 6735 -961 5 1381 6677 149 20 8 chr6 104372413 104374074 -45142963 + Lx LINE L1 4964 6637 -17 5 1381 246 32 0 0 chr6 104374074 104374105 -45142932 + (TAA)n Simple_repeat Simple_repeat 3 33 0 5 1381 1799 84 15 4 chr6 104374418 104374682 -45142355 + L1_Mus3 LINE L1 6366 6632 -6 5 1381 25 51 0 0 chr6 104375077 104375116 -45141921 + AT_rich Low_complexity Low_complexity 1 39 0 5 1381 26 0 0 0 chr6 104375965 104375991 -45141046 + AT_rich Low_complexity Low_complexity 1 26 0 5 1381 6473 199 40 80 chr6 104375993 104377952 -45139085 - Lx4B LINE L1 -11 7047 5143 5 1381 304 130 29 0 chr6 104377959 104378028 -45139009 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 1381 2523 215 90 15 chr6 104378039 104378564 -45138473 - RLTR22_Mur LTR ERVK -1117 731 153 5 1381 429 97 0 0 chr6 104378564 104378636 -45138401 + (TAA)n Simple_repeat Simple_repeat 3 74 0 5 1381 2523 215 90 15 chr6 104378636 104378789 -45138248 - RLTR22_Mur LTR ERVK -1696 152 3 5 1381 2177 228 73 27 chr6 104378793 104379813 -45137224 - Lx4B LINE L1 -3999 1878 841 5 1381 548 327 54 93 chr6 104379980 104380260 -45136777 - B4A SINE B4 -21 271 3 5 1381 477 50 0 0 chr6 104380295 104380355 -45136682 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1381 378 0 0 0 chr6 104380372 104380414 -45136623 + (TAA)n Simple_repeat Simple_repeat 3 44 0 5 1381 1333 54 5 47 chr6 104380420 104380613 -45136424 - L1Md_F2 LINE L1 -17 6565 6381 5 1381 195 69 0 0 chr6 104380613 104380642 -45136395 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1381 3329 42 2 0 chr6 104380665 104381070 -45135967 - L1Md_T LINE L1 0 6582 6177 5 1381 186 43 0 0 chr6 104381145 104381168 -45135869 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 1381 234 210 32 16 chr6 104381824 104381887 -45135150 + A-rich Low_complexity Low_complexity 1 64 0 5 1381 1168 75 0 0 chr6 104382029 104382175 -45134862 + B1_Mus1 SINE Alu 1 146 -2 5 1381 283 23 22 22 chr6 104382175 104382220 -45134817 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 5 1381 957 242 46 55 chr6 104383350 104383678 -45133359 - MT2B LTR ERVL 0 601 277 5 1381 1066 275 38 4 chr6 104383698 104383964 -45133073 + Lx5 LINE L1 6730 7004 -46 5 1381 354 80 0 0 chr6 104384012 104384062 -45132975 + (CAA)n Simple_repeat Simple_repeat 2 51 0 5 1381 452 200 25 98 chr6 104384083 104384205 -45132832 - MT2B LTR ERVL -420 113 1 5 1381 27 0 0 0 chr6 104385309 104385336 -45131701 + AT_rich Low_complexity Low_complexity 1 27 0 5 1381 642 235 35 0 chr6 104385703 104385818 -45131219 + B1_Mus2 SINE Alu 2 120 -27 5 1381 9245 137 13 2 chr6 104385820 104387844 -45129193 + Lx2A1 LINE L1 4964 7008 0 5 1381 403 278 94 26 chr6 104388286 104388478 -45128559 + Lx8 LINE L1 7267 7471 -2 5 1381 273 392 75 6 chr6 104389279 104389438 -45127599 + MIRb SINE MIR 89 258 -10 5 1381 234 81 0 0 chr6 104389750 104389787 -45127250 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1381 22 0 0 0 chr6 104389819 104389841 -45127196 + AT_rich Low_complexity Low_complexity 1 22 0 5 1381 576 0 0 0 chr6 104390013 104390077 -45126960 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1381 1255 105 0 6 chr6 104391733 104391915 -45125122 + B2_Mm2 SINE B2 1 181 -14 5 1381 355 298 22 7 chr6 104392185 104392332 -45124705 + B3A SINE B2 4 179 -37 5 1381 588 214 24 148 chr6 104392365 104392416 -45124621 - B2_Mm2 SINE B2 -10 185 136 5 1381 381 22 0 0 chr6 104392416 104392462 -45124575 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 5 1381 588 214 24 148 chr6 104392462 104392619 -45124418 - B2_Mm2 SINE B2 -60 135 3 5 1381 544 260 119 93 chr6 104395059 104395530 -45121507 + RLTR12B LTR ERVK 36 474 -53 5 1381 6728 107 23 8 chr6 104395789 104396853 -45120184 - Lx3_Mus LINE L1 -1 7008 5930 5 1381 1141 206 127 22 chr6 104397353 104397685 -45119352 - Lx4B LINE L1 -77 6973 6612 5 1381 7099 184 36 10 chr6 104398034 104398077 -45118960 - Lx2B LINE L1 -7 6993 6951 5 1381 4549 149 19 0 chr6 104398077 104398800 -45118237 - RMER19A LTR ERVK 0 737 1 5 1381 7099 184 36 10 chr6 104398800 104400110 -45116927 - Lx2B LINE L1 -50 6950 5604 5 1381 195 288 46 0 chr6 104401120 104401201 -45115836 + MIRc SINE MIR 106 193 -69 5 1381 809 141 7 0 chr6 104401815 104401950 -45115087 + URR1B DNA MER1_type 90 225 0 5 1381 199 0 31 31 chr6 104401975 104402007 -45115030 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 5 1381 48 88 0 0 chr6 104403716 104403841 -45113196 + AT_rich Low_complexity Low_complexity 1 125 0 5 1381 272 338 28 0 chr6 104404008 104404079 -45112958 + B4 SINE B4 101 173 -119 5 1381 26 107 0 0 chr6 104405196 104405299 -45111738 + AT_rich Low_complexity Low_complexity 1 103 0 5 1381 284 256 26 0 chr6 104405788 104405866 -45111171 + MLT1D LTR MaLR 413 492 -13 5 1381 381 329 86 43 chr6 104405949 104406206 -45110831 + Lx8 LINE L1 6841 7108 -365 5 1381 198 0 0 0 chr6 104406768 104406790 -45110247 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1381 257 338 39 0 chr6 104408158 104408235 -45108802 - B4A SINE B4 -11 281 202 6 1381 5404 61 0 6 chr6 104408259 104408952 -45108085 - L1Md_F2 LINE L1 -10 6572 5884 6 1381 2306 179 30 0 chr6 104409357 104409786 -45107251 - Lx4A LINE L1 -1028 6030 5589 6 1381 1923 203 12 70 chr6 104409799 104410358 -45106679 + Lx4B LINE L1 6360 6883 -117 6 1381 387 0 0 0 chr6 104410385 104410428 -45106609 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 6 1381 248 333 14 0 chr6 104411235 104411307 -45105730 + B3A SINE B2 78 150 -48 6 1381 549 129 0 0 chr6 104411310 104411403 -45105634 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 1381 243 61 0 0 chr6 104411497 104411530 -45105507 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 6 1381 1832 114 80 13 chr6 104411837 104412148 -45104889 + Lx LINE L1 6320 6651 -3 6 1381 384 22 0 0 chr6 104413542 104413587 -45103450 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1381 216 0 0 0 chr6 104413675 104413699 -45103338 + (TTA)n Simple_repeat Simple_repeat 2 25 0 6 1381 11733 52 7 2 chr6 104415358 104417565 -45099472 - L1Md_F2 LINE L1 -13 6569 4349 6 1381 220 189 45 36 chr6 104417566 104417676 -45099361 + (TA)n Simple_repeat Simple_repeat 1 111 0 6 1381 262 342 26 0 chr6 104417767 104417843 -45099194 + B4A SINE B4 144 221 -71 6 1381 22 0 0 0 chr6 104417963 104417985 -45099052 + AT_rich Low_complexity Low_complexity 1 22 0 6 1381 342 319 50 63 chr6 104418770 104419125 -45097912 - MLT1A0 LTR MaLR -19 389 71 6 1381 282 56 0 0 chr6 104419691 104419727 -45097310 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1381 23 33 0 0 chr6 104420675 104420705 -45096332 + AT_rich Low_complexity Low_complexity 1 30 0 6 1381 236 313 14 29 chr6 104420963 104421032 -45096005 + PB1D10 SINE Alu 19 86 -31 6 1381 188 35 35 0 chr6 104421395 104421424 -45095613 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1381 594 227 40 6 chr6 104421437 104421614 -45095423 - Lx2 LINE L1 -8 6989 6807 6 1381 917 244 7 55 chr6 104421841 104422114 -45094923 + RLTR11B LTR ERVK 1 260 -193 6 1381 2501 83 94 3 chr6 104422471 104422834 -45094203 + MTA_Mm LTR MaLR 1 396 0 6 1381 6958 95 18 72 chr6 104422834 104423995 -45093042 + MTA_Mm-int LTR MaLR 1 1098 0 6 1381 3042 64 10 2 chr6 104423995 104424388 -45092649 + MTA_Mm LTR MaLR 1 396 0 6 1381 391 293 129 0 chr6 104424617 104424733 -45092304 + B1_Mur2 SINE Alu 19 149 0 6 1381 293 342 8 41 chr6 104426382 104426504 -45090533 + LTR16E2 LTR ERVL 148 265 -303 6 1381 230 322 110 0 chr6 104426622 104426740 -45090297 + LTR16E2 LTR ERVL 398 528 -10 6 1381 424 281 192 0 chr6 104426859 104427026 -45090011 - B3 SINE B2 -16 200 2 6 1381 1092 247 32 39 chr6 104427238 104427550 -45089487 - RLTR17 LTR ERVK -74 618 309 6 1381 3423 35 0 0 chr6 104427723 104428119 -45088918 + MTA_Mm LTR MaLR 1 396 0 6 1381 3716 65 0 37 chr6 104428146 104428661 -45088376 - L1Md_F2 LINE L1 0 6582 6087 6 1381 21 71 0 0 chr6 104428704 104428746 -45088291 + AT_rich Low_complexity Low_complexity 1 42 0 6 1381 288 373 20 33 chr6 104429712 104429956 -45087081 + ERVL-E-int LTR ERVL 4309 4549 -1118 6 1381 180 0 0 0 chr6 104430105 104430125 -45086912 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1381 243 0 0 0 chr6 104430213 104430240 -45086797 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1381 441 0 0 0 chr6 104430962 104431011 -45086026 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1381 705 333 87 23 chr6 104431346 104431656 -45085381 - MTEa LTR MaLR -9 370 41 6 1381 247 350 13 105 chr6 104431725 104431751 -45085286 - B3A SINE B2 -5 193 171 6 1381 180 0 0 0 chr6 104431751 104431771 -45085266 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 1381 247 350 13 105 chr6 104431771 104431897 -45085140 - B3A SINE B2 -28 170 55 6 1381 301 268 14 0 chr6 104434303 104434374 -45082663 - RMER30 DNA MER1_type -27 175 104 6 1381 281 232 0 35 chr6 104434378 104434463 -45082574 + CT-rich Low_complexity Low_complexity 2 83 0 6 1381 8011 88 33 43 chr6 104434801 104435864 -45081173 - MusHAL1 LINE L1 0 2712 1685 6 1381 921 104 0 0 chr6 104435864 104435999 -45081038 + (TTTC)n Simple_repeat Simple_repeat 2 136 0 6 1381 8011 88 33 43 chr6 104435999 104436223 -45080814 - MusHAL1 LINE L1 -1028 1684 1440 6 1381 3215 139 10 2 chr6 104436220 104436717 -45080320 - L1VL4 LINE L1 -5800 502 2 6 1381 720 64 0 0 chr6 104436748 104436842 -45080195 + (GGGAGA)n Simple_repeat Simple_repeat 4 97 0 6 1381 344 331 84 40 chr6 104436858 104437318 -45079719 - L1ME1 LINE L1 -1 6178 5657 6 1381 261 0 0 0 chr6 104437447 104437476 -45079561 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6 1381 1564 280 40 16 chr6 104437476 104437879 -45079158 - MTD LTR MaLR -14 405 1 6 1381 528 325 29 17 chr6 104438137 104438309 -45078728 - B3A SINE B2 0 198 25 6 1381 183 220 0 0 chr6 104438772 104438822 -45078215 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1381 668 248 93 0 chr6 104439173 104439334 -45077703 - B3 SINE B2 -40 176 1 6 1381 276 258 40 29 chr6 104439338 104439481 -45077556 - L1ME1 LINE L1 -754 5410 5267 6 1381 1002 246 119 6 chr6 104439497 104439833 -45077204 - ORR1D1 LTR MaLR 0 374 1 6 1381 3615 147 31 21 chr6 104441047 104441699 -45075338 + Lx3B LINE L1 6311 6968 -5 6 1381 2919 63 3 3 chr6 104441799 104442180 -45074857 + L1Md_F2 LINE L1 6202 6582 0 6 1381 200 198 68 17 chr6 104446445 104446563 -45070474 + (TA)n Simple_repeat Simple_repeat 2 125 0 6 1381 29 90 0 0 chr6 104447175 104447253 -45069784 + AT_rich Low_complexity Low_complexity 1 78 0 6 1381 318 26 0 0 chr6 104449136 104449175 -45067862 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1381 405 323 16 0 chr6 104449422 104449549 -45067488 + MIR SINE MIR 110 238 -24 6 1381 765 115 163 13 chr6 104450098 104450273 -45066764 - L1_Mus3 LINE L1 -12 6626 6442 6 1381 1240 289 37 25 chr6 104450321 104450676 -45066361 + ORR1E LTR MaLR 1 359 0 6 1381 230 146 42 0 chr6 104450754 104450802 -45066235 + (TATG)n Simple_repeat Simple_repeat 2 51 0 6 1381 29 0 0 0 chr6 104450937 104450966 -45066071 + AT_rich Low_complexity Low_complexity 1 29 0 6 1381 227 402 77 59 chr6 104451719 104451888 -45065149 - B4A SINE B4 -120 172 1 6 1381 387 41 0 0 chr6 104453460 104453509 -45063528 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1381 539 323 88 42 chr6 104453557 104453819 -45063218 - B4A SINE B4 -14 278 5 6 1381 181 109 0 42 chr6 104454555 104454603 -45062434 + A-rich Low_complexity Low_complexity 2 47 0 6 1381 3825 86 19 8 chr6 104455012 104455542 -45061495 + L1Md_F2 LINE L1 6047 6582 0 6 1381 396 0 0 0 chr6 104455891 104455935 -45061102 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1381 474 132 0 0 chr6 104456273 104456349 -45060688 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 1381 22 0 0 0 chr6 104457235 104457257 -45059780 + AT_rich Low_complexity Low_complexity 1 22 0 6 1381 194 139 0 44 chr6 104457433 104457478 -45059559 + (TATG)n Simple_repeat Simple_repeat 4 46 0 6 1381 246 105 0 0 chr6 104457691 104457729 -45059308 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1381 203 0 37 0 chr6 104457729 104457756 -45059281 + (TATG)n Simple_repeat Simple_repeat 2 29 0 6 1381 209 299 0 15 chr6 104458578 104458646 -45058391 + L2c LINE L2 3320 3386 -1 6 1381 253 109 18 18 chr6 104458889 104458945 -45058092 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1381 333 355 77 39 chr6 104459544 104459752 -45057285 - ORR1E LTR MaLR -140 219 4 6 1381 9945 202 32 95 chr6 104460087 104461930 -45055107 - Lx5 LINE L1 -321 6729 4857 6 1381 410 67 53 0 chr6 104461930 104462005 -45055032 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 1381 9945 172 35 164 chr6 104462005 104463441 -45053596 - Lx5 LINE L1 -1021 4856 3845 6 1381 423 0 0 0 chr6 104463441 104463488 -45053549 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1381 9945 172 35 164 chr6 104463488 104464311 -45052726 - Lx5 LINE L1 -2033 3844 3025 6 172 1685 76 53 11 chr6 104464322 104464587 -45052450 - BGLII LTR ERVK -2 419 144 6 1382 208 50 0 91 chr6 104464616 104464660 -45052377 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1382 285 349 119 6 chr6 104464661 104464837 -45052200 - RMER30 DNA MER1_type -5 197 2 6 1382 17343 72 1 5 chr6 104465392 104467708 -45049329 + L1_Mm LINE L1 3281 5616 -696 6 1382 7824 48 5 0 chr6 104467708 104468686 -45048351 + L1Md_F2 LINE L1 5588 6570 -12 6 1382 1384 212 42 35 chr6 104468686 104468728 -45048309 + L1_Mm LINE L1 5617 5662 -650 6 1382 585 252 8 15 chr6 104469389 104469526 -45047511 - B1_Mur1 SINE Alu -7 142 14 6 1382 519 112 0 0 chr6 104469838 104469918 -45047119 + (TA)n Simple_repeat Simple_repeat 1 80 0 6 1382 333 47 0 0 chr6 104469998 104470041 -45046996 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1382 329 329 148 28 chr6 104470382 104470632 -45046405 - MLT2B4 LTR ERVL -262 294 15 6 1382 779 97 18 0 chr6 104471825 104471938 -45045099 + Lx3B LINE L1 6312 6426 -547 6 1382 554 264 154 12 chr6 104471946 104472116 -45044921 + MTEb LTR MaLR 3 209 -170 6 1382 675 0 0 0 chr6 104472116 104472191 -45044846 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1382 390 356 179 38 chr6 104472191 104472283 -45044754 + MTEb LTR MaLR 210 302 -77 6 1382 1071 211 0 35 chr6 104472313 104472539 -45044498 - Lx5 LINE L1 -134 6916 6699 6 1382 642 329 62 25 chr6 104473242 104473485 -45043552 - B4A SINE B4 -39 253 2 6 1382 343 268 109 40 chr6 104474780 104474955 -45042082 + B2_Mm2 SINE B2 1 187 -8 6 1382 200 204 0 0 chr6 104475108 104475152 -45041885 + (TAG)n Simple_repeat Simple_repeat 1 44 0 6 1382 429 258 15 15 chr6 104475158 104475292 -45041745 + Lx7 LINE L1 7562 7695 -1 6 1382 312 361 75 87 chr6 104475443 104475777 -45041260 + MER119 DNA MER1_type 1 330 -253 6 1382 1012 106 87 0 chr6 104475827 104475988 -45041049 - Lx3_Mus LINE L1 -630 6379 6205 6 1382 602 128 0 33 chr6 104475988 104476109 -45040928 + Lx3A LINE L1 6862 6978 -3 6 1382 246 105 0 0 chr6 104476166 104476204 -45040833 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 1382 282 273 0 0 chr6 104476275 104476341 -45040696 + ID_B1 SINE B4 127 192 -32 6 1382 2828 93 5 16 chr6 104477398 104477823 -45039214 - BGLII LTR ERVK 0 421 2 6 1382 3506 198 37 41 chr6 104477825 104478780 -45038257 - RMER3D-int LTR ERVK -1 2841 1891 6 1382 609 169 38 75 chr6 104478748 104478908 -45038129 - RMER3D-int LTR ERVK -1148 1694 1541 6 1382 2066 153 108 16 chr6 104478948 104479444 -45037593 - RMER3D-int LTR ERVK -1309 1533 1014 6 1382 501 44 99 0 chr6 104479468 104479559 -45037478 + (TTTCC)n Simple_repeat Simple_repeat 1 100 0 7 1382 735 187 42 54 chr6 104479559 104479973 -45037064 - RMER3D-int LTR ERVK -1991 851 358 7 1382 783 198 0 44 chr6 104479991 104480197 -45036840 - RMER3D-int LTR ERVK -1994 848 652 7 1382 514 105 0 0 chr6 104480212 104480300 -45036737 - RMER3D-int LTR ERVK -2278 564 489 7 1382 2783 82 47 15 chr6 104480718 104481126 -45035911 - BGLII LTR ERVK 0 421 1 7 1382 288 310 0 14 chr6 104481139 104481286 -45035751 + L1MA6 LINE L1 5866 6007 -293 7 1382 293 286 50 57 chr6 104481301 104481442 -45035595 - RMER2 LTR ERV1 -18 549 410 7 1382 771 42 0 0 chr6 104481446 104481541 -45035496 + (TTC)n Simple_repeat Simple_repeat 2 96 0 7 1382 401 318 32 79 chr6 104481924 104482204 -45034833 + L1MA6 LINE L1 6019 6285 -15 7 1382 219 375 0 0 chr6 104482527 104482599 -45034438 + PB1 SINE Alu 2 73 -54 7 1382 408 88 0 0 chr6 104483230 104483287 -45033750 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1382 28 29 0 0 chr6 104483836 104483871 -45033166 + AT_rich Low_complexity Low_complexity 1 35 0 7 1382 3824 51 59 2 chr6 104484434 104484925 -45032112 - MURVY-LTR LTR ERV1 0 519 1 7 1382 676 334 237 22 chr6 104486400 104487241 -45029796 - Lx8 LINE L1 -195 7278 6258 7 1382 660 87 0 0 chr6 104487338 104487430 -45029607 + (TG)n Simple_repeat Simple_repeat 2 93 0 7 1382 263 286 0 25 chr6 104487501 104487580 -45029457 + (TATG)n Simple_repeat Simple_repeat 3 79 0 7 1382 249 33 0 0 chr6 104488495 104488525 -45028512 + (TTA)n Simple_repeat Simple_repeat 1 30 0 7 1382 4210 50 6 2 chr6 104488721 104488824 -45028213 - L1_Mus1 LINE L1 0 6567 6465 7 1382 2716 65 3 0 chr6 104488824 104489178 -45027859 - L1Md_F2 LINE L1 0 6582 6228 7 1382 4210 50 6 2 chr6 104489178 104489592 -45027445 - L1_Mus1 LINE L1 -103 6464 6049 7 1382 3000 42 46 2 chr6 104489593 104490013 -45027024 + L1_Mus1 LINE L1 5587 6021 -617 7 1382 360 43 0 0 chr6 104490013 104490059 -45026978 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1382 2710 87 59 22 chr6 104490059 104490095 -45026942 + L1_Mus1 LINE L1 6022 6060 -578 7 1382 5811 185 38 2 chr6 104490119 104491960 -45025077 - Lx3C LINE L1 -314 6662 4734 7 1382 322 311 159 28 chr6 104491989 104492240 -45024797 - L1M5 LINE L1 -437 5736 5453 7 1382 648 250 23 8 chr6 104492460 104492681 -45024356 - L1M5 LINE L1 -985 5161 4938 7 1382 1714 81 8 4 chr6 104492901 104493137 -45023900 - L1_Mus1 LINE L1 0 6567 6331 7 1382 1217 40 7 0 chr6 104493137 104493286 -45023751 + L1_Mus1 LINE L1 6171 6320 -247 7 1382 3145 30 2 48 chr6 104495710 104495865 -45021172 - MTA_Mm LTR MaLR 0 396 260 7 1382 8370 29 5 0 chr6 104495865 104496856 -45020181 + L1Md_A LINE L1 5587 6582 0 7 1382 3145 30 2 48 chr6 104496856 104497115 -45019922 - MTA_Mm LTR MaLR -137 259 1 7 1382 378 61 0 0 chr6 104498070 104498119 -45018918 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1382 243 0 0 0 chr6 104498143 104498170 -45018867 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 7 1382 926 276 50 30 chr6 104498968 104499347 -45017690 - MTD LTR MaLR -5 402 11 7 1382 345 24 0 0 chr6 104499352 104499394 -45017643 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1382 248 268 59 51 chr6 104499746 104499864 -45017173 - CYRA11_Mm Unknown Y-chromosome -259 358 240 7 1382 607 197 82 0 chr6 104499763 104499910 -45017127 + URR1A DNA MER1_type 58 216 -10 7 1382 294 320 8 51 chr6 104500816 104500938 -45016099 + B1F1 SINE Alu 22 138 -9 1 1382 861 288 73 0 chr6 104501405 104501638 -45015399 - B4A SINE B4 -2 290 41 2 1382 209 163 20 0 chr6 104506321 104506370 -45010667 + GA-rich Low_complexity Low_complexity 3 52 0 3 1382 1101 309 32 15 chr6 104507610 104508014 -45009023 - L3 LINE CR1 -175 4314 3904 4 1382 185 35 0 65 chr6 104508519 104508550 -45008487 + (TTTTTG)n Simple_repeat Simple_repeat 5 33 0 5 1382 396 225 12 0 chr6 104508552 104508632 -45008405 - ID_B1 SINE B4 -2 222 142 6 1382 6834 32 1 0 chr6 104508776 104509584 -45007453 + L1Md_T LINE L1 5774 6582 0 7 1382 189 74 0 0 chr6 104510589 104510616 -45006421 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 8 1382 192 97 0 0 chr6 104511868 104511899 -45005138 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1382 242 354 127 0 chr6 104512492 104512650 -45004387 - MER58A DNA MER1_type -24 200 23 1 1382 857 291 69 48 chr6 104512685 104513020 -45004017 - MTE2b LTR MaLR -20 359 18 1 1382 237 227 0 0 chr6 104513058 104513102 -45003935 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1382 1611 154 85 0 chr6 104514974 104515267 -45001770 - Lx3C LINE L1 0 6976 6659 1 1382 381 264 57 8 chr6 104515531 104515653 -45001384 - MER94 DNA AcHobo -6 128 1 1 1382 273 57 0 0 chr6 104516542 104516577 -45000460 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1382 2955 233 16 2 chr6 104516577 104517188 -44999849 - Lx5 LINE L1 -19 7031 6412 1 1382 671 252 24 66 chr6 104517188 104517400 -44999637 - B3 SINE B2 -11 205 3 1 1382 204 125 0 0 chr6 104517450 104517482 -44999555 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1382 303 71 0 0 chr6 104518194 104518236 -44998801 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1382 1680 62 0 0 chr6 104518271 104518479 -44998558 - L1Md_F2 LINE L1 -340 6242 6035 2 1382 1434 83 5 19 chr6 104518479 104518689 -44998348 + L1_Mus1 LINE L1 6361 6567 0 2 1382 25 31 0 0 chr6 104518820 104518852 -44998185 + AT_rich Low_complexity Low_complexity 1 32 0 2 1382 385 370 50 73 chr6 104519673 104519973 -44997064 - MLT1H LTR MaLR -179 370 78 2 1382 617 321 47 21 chr6 104520059 104520250 -44996787 - B3A SINE B2 -1 197 2 2 1382 832 191 74 45 chr6 104521557 104521733 -44995304 + MTC LTR MaLR 232 412 -9 2 1382 460 0 33 0 chr6 104522152 104522212 -44994825 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1382 231 214 0 0 chr6 104523247 104523317 -44993720 + CT-rich Low_complexity Low_complexity 2 71 0 2 1382 226 312 11 91 chr6 104523395 104523483 -44993554 - B4A SINE B4 -141 151 71 2 1382 2390 192 78 11 chr6 104523652 104524209 -44992828 - Lx5 LINE L1 -811 6239 5662 2 1382 21 89 0 0 chr6 104524790 104524846 -44992191 + AT_rich Low_complexity Low_complexity 1 56 0 3 1382 1927 334 77 35 chr6 104525110 104526206 -44990831 - Lx8 LINE L1 0 7473 6332 3 1382 373 293 233 17 chr6 104527259 104527551 -44989486 + MER63C DNA AcHobo 31 385 -545 3 1382 243 316 68 0 chr6 104527735 104527868 -44989169 + MER63C DNA AcHobo 734 875 -55 3 1382 207 0 0 0 chr6 104528537 104528560 -44988477 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1382 268 344 42 0 chr6 104529549 104529645 -44987392 + LTR33C LTR ERVL 530 629 0 3 1382 791 21 10 0 chr6 104531513 104531610 -44985427 + (TTC)n Simple_repeat Simple_repeat 2 99 0 3 1382 485 273 85 8 chr6 104532448 104532577 -44984460 - B1_Mur4 SINE Alu -1 149 11 3 1382 181 353 73 0 chr6 104533125 104533193 -44983844 - L2c LINE L2 -39 3348 3276 3 1382 538 325 48 48 chr6 104533286 104533493 -44983544 + B3 SINE B2 5 211 -5 3 1382 5039 63 0 2 chr6 104534129 104534766 -44982271 + L1_Mus1 LINE L1 5929 6564 -3 3 1382 214 205 0 0 chr6 104535089 104535128 -44981909 + T-rich Low_complexity Low_complexity 1 39 0 4 1382 4585 117 23 1 chr6 104535738 104536424 -44980613 - Lx LINE L1 0 6654 5954 4 1382 577 299 40 76 chr6 104536932 104537182 -44979855 + B4 SINE B4 3 243 -49 4 1382 510 17 0 0 chr6 104537206 104537265 -44979772 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1382 393 303 84 26 chr6 104538645 104538835 -44978202 - MIRc SINE MIR -65 203 3 4 1382 669 317 92 16 chr6 104539004 104539254 -44977783 - B4A SINE B4 -17 275 7 4 1382 333 116 29 14 chr6 104540897 104540967 -44976070 + CT-rich Low_complexity Low_complexity 2 72 0 4 1382 540 314 32 5 chr6 104541731 104541917 -44975120 + B4 SINE B4 1 191 -101 4 1382 303 222 0 0 chr6 104542048 104542129 -44974908 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 1382 463 344 42 5 chr6 104542179 104542369 -44974668 + B3 SINE B2 9 205 -11 4 1382 590 203 171 0 chr6 104542394 104542517 -44974520 - B1_Mur3 SINE Alu -3 146 3 5 1382 378 94 0 0 chr6 104542745 104542809 -44974228 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1382 288 0 0 0 chr6 104542809 104542840 -44974197 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1382 267 79 0 0 chr6 104543120 104543158 -44973879 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1382 2770 97 106 5 chr6 104543252 104543686 -44973351 - L1_Mus3 LINE L1 -5 6633 6156 5 1382 4181 92 17 2 chr6 104543686 104544556 -44972481 + L1_Mus3 LINE L1 5261 6142 -496 5 1382 322 233 48 10 chr6 104546057 104546161 -44970876 - Lx4B LINE L1 -4 7054 6947 5 1382 677 179 121 6 chr6 104546162 104546319 -44970718 + Lx3C LINE L1 6668 6842 -134 5 1382 637 166 14 0 chr6 104546765 104546910 -44970127 + CT-rich Low_complexity Low_complexity 2 148 0 5 1382 729 211 179 37 chr6 104548581 104548705 -44968332 - Lx9 LINE L1 0 7644 7499 5 1382 651 26 0 0 chr6 104548705 104548782 -44968255 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1382 729 211 179 37 chr6 104548782 104548953 -44968084 - Lx9 LINE L1 -146 7498 7308 5 1382 1437 278 111 36 chr6 104548984 104549691 -44967346 + RMER13A LTR ERVK 2 808 -52 6 1382 2177 253 93 24 chr6 104549706 104550414 -44966623 - Lx9 LINE L1 -360 7284 6528 5 1382 234 0 0 0 chr6 104550587 104550613 -44966424 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1382 445 328 56 64 chr6 104551112 104551379 -44965658 - MLT1E1 LTR MaLR -2 652 388 6 1382 271 303 20 20 chr6 104551774 104551875 -44965162 + MLT1A1 LTR MaLR 308 408 0 6 1382 229 309 78 70 chr6 104552643 104552758 -44964279 + PB1D10 SINE Alu 1 116 -1 6 1382 24 67 0 0 chr6 104552791 104552836 -44964201 + AT_rich Low_complexity Low_complexity 1 45 0 6 1382 604 287 19 0 chr6 104552960 104553117 -44963920 + B3A SINE B2 1 160 -38 6 1382 396 0 0 0 chr6 104553120 104553164 -44963873 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1382 184 217 174 0 chr6 104553537 104553583 -44963454 + MIRb SINE MIR 192 245 -23 6 1382 993 222 174 10 chr6 104554054 104554359 -44962678 + ORR1E LTR MaLR 5 359 0 6 1382 216 0 0 0 chr6 104555887 104555911 -44961126 + (CCA)n Simple_repeat Simple_repeat 3 26 0 7 1382 456 19 0 0 chr6 104555912 104555965 -44961072 + (CAA)n Simple_repeat Simple_repeat 2 54 0 7 1382 198 0 0 0 chr6 104556711 104556733 -44960304 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1382 254 259 0 0 chr6 104557152 104557210 -44959827 + MER117 DNA MER1_type 82 139 -58 7 1382 291 274 146 89 chr6 104557376 104557656 -44959381 - MLT1A LTR MaLR -51 323 28 7 1382 299 341 101 0 chr6 104558892 104559021 -44958016 - B1F SINE Alu -7 142 1 7 1382 766 40 39 33 chr6 104561757 104561910 -44955127 + (TTCTC)n Simple_repeat Simple_repeat 2 155 0 7 1382 444 19 0 0 chr6 104562645 104562698 -44954339 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1382 909 0 0 0 chr6 104564509 104564610 -44952427 + (TTC)n Simple_repeat Simple_repeat 1 101 0 7 1382 4236 93 52 5 chr6 104564626 104565243 -44951794 - L1_Mus3 LINE L1 -1 6637 5992 7 1382 1560 174 55 9 chr6 104567024 104567349 -44949688 - L1_Mur2 LINE L1 -292 5594 5255 8 1382 7355 65 10 1 chr6 104567348 104568524 -44948513 - L1Md_F2 LINE L1 -12 6570 5380 8 1382 5030 79 4 0 chr6 104568525 104569205 -44947832 + L1Md_F2 LINE L1 4675 5357 -526 8 1382 2517 146 46 17 chr6 104569205 104569685 -44947352 - L1_Mur2 LINE L1 -620 5266 4773 8 1382 2061 254 131 57 chr6 104569741 104570446 -44946591 - RMER13A LTR ERVK -103 757 1 8 1382 2570 160 91 27 chr6 104570446 104570993 -44946044 - L1_Mur2 LINE L1 -1105 4772 4191 8 1382 6700 176 40 35 chr6 104570994 104572354 -44944683 + Lx3C LINE L1 5609 6975 -1 8 1382 226 219 78 0 chr6 104572355 104572419 -44944618 + MLT1D LTR MaLR 69 137 -368 8 1382 483 18 0 0 chr6 104572794 104572850 -44944187 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1382 427 262 0 37 chr6 104572862 104572969 -44944068 - B4A SINE B4 -8 284 182 8 1382 337 295 44 57 chr6 104572971 104573129 -44943908 - Lx8 LINE L1 -203 7270 7115 8 1382 220 336 37 46 chr6 104573245 104573354 -44943683 - PB1D9 SINE Alu -8 112 5 8 1382 201 191 43 0 chr6 104574271 104574318 -44942719 - L3 LINE CR1 -1625 2864 2816 8 1382 663 103 0 0 chr6 104574434 104574531 -44942506 + (GAAA)n Simple_repeat Simple_repeat 1 97 0 9 1382 1059 280 59 25 chr6 104576415 104576437 -44940600 - MTEb LTR MaLR -46 333 314 9 1382 306 0 0 0 chr6 104576437 104576471 -44940566 + (TC)n Simple_repeat Simple_repeat 1 34 0 9 1382 279 0 0 0 chr6 104576471 104576501 -44940536 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1382 585 42 0 0 chr6 104576502 104576574 -44940463 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 9 1382 1059 280 59 25 chr6 104576574 104576870 -44940167 - MTEb LTR MaLR -66 313 2 9 1382 215 61 30 0 chr6 104576964 104576997 -44940040 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1382 252 0 0 0 chr6 104578079 104578107 -44938930 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 9 1382 629 53 21 0 chr6 104578575 104578670 -44938367 - L1Md_F3 LINE L1 -14 6570 6474 9 1382 181 366 43 11 chr6 104578708 104578802 -44938235 + L2a LINE L2 2346 2442 -977 9 1382 459 0 0 0 chr6 104578811 104578862 -44938175 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1382 243 0 0 0 chr6 104578970 104578997 -44938040 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1382 345 356 91 28 chr6 104579283 104579601 -44937436 + L2a LINE L2 3031 3368 -58 9 1382 187 279 0 68 chr6 104579983 104580056 -44936981 + L2 LINE L2 2806 2873 -546 1 1382 495 0 0 0 chr6 104580165 104580220 -44936817 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1382 273 57 0 0 chr6 104580237 104580272 -44936765 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1 1382 251 344 118 6 chr6 104580548 104580709 -44936328 + MIR SINE MIR 4 182 -80 1 1382 21 0 0 0 chr6 104580816 104580837 -44936200 + AT_rich Low_complexity Low_complexity 1 21 0 1 1382 612 0 0 0 chr6 104581022 104581090 -44935947 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 1 1382 285 98 0 0 chr6 104581097 104581138 -44935899 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1382 27 0 0 0 chr6 104582510 104582537 -44934500 + AT_rich Low_complexity Low_complexity 1 27 0 1 1382 3528 123 52 17 chr6 104582547 104583144 -44933893 - Lx3B LINE L1 -3 6970 6353 1 1382 477 0 0 0 chr6 104584116 104584169 -44932868 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1382 556 295 26 0 chr6 104584948 104585104 -44931933 + ID_B1 SINE B4 3 162 -62 1 1382 629 345 68 32 chr6 104585475 104585945 -44931092 - Lx8 LINE L1 -5 7468 6982 1 1382 361 325 120 41 chr6 104586171 104586437 -44930600 + B4A SINE B4 2 288 -4 1 1382 423 0 0 0 chr6 104586481 104586528 -44930509 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1382 1347 67 0 0 chr6 104586629 104586808 -44930229 + (TCC)n Simple_repeat Simple_repeat 2 180 0 1 1382 315 0 0 0 chr6 104586808 104586843 -44930194 + (TTC)n Simple_repeat Simple_repeat 2 36 0 1 1382 3253 164 82 5 chr6 104586928 104587524 -44929513 + RLTR26 LTR ERVK 1 642 0 1 1382 11232 107 16 101 chr6 104587527 104587793 -44929244 - L1VL2 LINE L1 -2613 3264 3025 1 1382 851 78 0 8 chr6 104587793 104587910 -44929127 - B1_Mus1 SINE Alu -2 146 31 1 1382 11232 107 16 101 chr6 104587910 104590904 -44926133 - L1VL2 LINE L1 -2613 3024 322 1 1382 45 55 0 0 chr6 104592333 104592406 -44924631 + AT_rich Low_complexity Low_complexity 1 73 0 1 1382 283 174 72 32 chr6 104592417 104592542 -44924495 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 1 1382 183 158 79 0 chr6 104593444 104593482 -44923555 + MIR SINE MIR 115 155 -107 1 1382 714 286 55 5 chr6 104594534 104594734 -44922303 + B3 SINE B2 1 210 -6 1 1383 474 18 0 0 chr6 104595599 104595654 -44921383 + (GAAA)n Simple_repeat Simple_repeat 4 58 0 1 1383 1200 101 0 0 chr6 104595673 104595851 -44921186 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1 1383 180 0 0 0 chr6 104595877 104595897 -44921140 + (GGAA)n Simple_repeat Simple_repeat 2 21 0 1 1383 229 270 64 53 chr6 104597273 104597367 -44919670 + MER119 DNA MER1_type 226 320 -263 1 1383 1133 190 37 0 chr6 104598005 104598221 -44918816 + URR1B DNA MER1_type 1 224 -1 1 1383 265 356 61 0 chr6 104599498 104599630 -44917407 + B1F1 SINE Alu 2 141 -8 1 1383 2333 176 73 11 chr6 104599631 104600097 -44916940 + Lx2 LINE L1 6502 6996 -1 1 1383 242 351 0 0 chr6 104600126 104600203 -44916834 + ID4_ SINE ID 3 79 -4 1 1383 491 195 9 0 chr6 104600825 104600938 -44916099 + CT-rich Low_complexity Low_complexity 4 117 0 1 1383 255 61 0 0 chr6 104601918 104601951 -44915086 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1383 725 360 39 16 chr6 104602278 104602532 -44914505 + B4A SINE B4 30 289 -3 1 1383 203 146 18 0 chr6 104603107 104603162 -44913875 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1383 1583 331 70 53 chr6 104603309 104604181 -44912856 - Lx8 LINE L1 -9 7464 6578 1 1383 889 105 28 14 chr6 104604792 104604937 -44912100 - L1_Mus1 LINE L1 -13 6554 6408 1 1383 429 70 0 0 chr6 104605119 104605176 -44911861 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 1 1383 25 0 0 0 chr6 104607349 104607374 -44909663 + AT_rich Low_complexity Low_complexity 1 25 0 1 1383 312 345 88 18 chr6 104607789 104608061 -44908976 + B4 SINE B4 2 292 0 1 1383 405 0 0 0 chr6 104608080 104608125 -44908912 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1383 8623 7 0 0 chr6 104609624 104610603 -44906434 - L1Md_A LINE L1 -1040 4843 3865 1 1383 6532 8 0 1 chr6 104610602 104611342 -44905695 + L1Md_A LINE L1 4848 5586 -297 1 1383 8817 14 0 0 chr6 104611343 104612338 -44904699 + L1Md_A LINE L1 5588 6582 0 1 1383 441 0 0 0 chr6 104612417 104612466 -44904571 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1383 297 0 0 0 chr6 104612466 104612498 -44904539 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1383 327 363 44 19 chr6 104612575 104612735 -44904302 - B4A SINE B4 -115 177 14 1 1383 585 236 71 0 chr6 104612884 104613024 -44904013 - MTEb LTR MaLR 0 379 230 1 1383 310 284 0 58 chr6 104613061 104613147 -44903890 + MTE2b LTR MaLR 154 234 -145 1 1383 180 0 0 0 chr6 104613202 104613222 -44903815 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1383 261 0 0 0 chr6 104613222 104613250 -44903787 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1383 420 20 0 0 chr6 104613356 104613405 -44903632 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1383 48 18 0 0 chr6 104613448 104613503 -44903534 + AT_rich Low_complexity Low_complexity 1 55 0 1 1383 339 244 12 0 chr6 104613640 104613726 -44903311 - L1M5 LINE L1 -925 5221 5135 1 1383 31 26 0 0 chr6 104613870 104613908 -44903129 + AT_rich Low_complexity Low_complexity 1 38 0 1 1383 339 65 0 0 chr6 104613927 104613973 -44903064 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1383 889 113 38 0 chr6 104613993 104614126 -44902911 + B1_Mus1 SINE Alu 1 138 -10 1 1383 216 86 0 0 chr6 104614128 104614163 -44902874 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1383 6626 73 0 13 chr6 104614168 104615088 -44901949 - L1_Mm LINE L1 -3371 2512 1605 1 1383 2737 76 24 5 chr6 104615085 104615457 -44901580 + L1Md_F2 LINE L1 6183 6561 -21 1 1383 293 0 0 26 chr6 104615457 104615495 -44901542 + (CAA)n Simple_repeat Simple_repeat 2 38 0 1 1383 669 350 47 16 chr6 104615498 104615820 -44901217 - MER2 DNA MER2_type -4 341 10 1 1383 459 0 0 0 chr6 104615907 104615958 -44901079 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1383 462 314 0 8 chr6 104615959 104616078 -44900959 - B1_Mur1 SINE Alu -9 140 23 1 1383 332 352 69 60 chr6 104616246 104616479 -44900558 + B4A SINE B4 3 237 -55 1 1383 683 267 5 19 chr6 104617205 104617415 -44899622 + B3 SINE B2 5 211 -5 1 1383 207 347 27 0 chr6 104619171 104619246 -44897791 + L2 LINE L2 219 295 -3124 1 1383 414 57 0 0 chr6 104619573 104619626 -44897411 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1383 1933 293 102 44 chr6 104619916 104620519 -44896518 - Lx6 LINE L1 -70 7390 6738 1 1383 906 131 0 0 chr6 104620519 104620664 -44896373 + (TTTC)n Simple_repeat Simple_repeat 4 148 0 1 1383 1933 298 75 35 chr6 104620664 104620969 -44896068 - Lx6 LINE L1 -723 6737 6216 1 1383 21 71 0 0 chr6 104620993 104621035 -44896002 + AT_rich Low_complexity Low_complexity 1 42 0 1 1383 532 268 42 0 chr6 104621144 104621286 -44895751 - B1F2 SINE Alu -1 148 1 1 1383 329 385 40 16 chr6 104622621 104622745 -44894292 - B1F SINE Alu -10 139 13 1 1383 231 386 62 28 chr6 104622640 104622784 -44894253 - ID_B1 SINE B4 -26 198 50 1 1383 1194 55 0 0 chr6 104623121 104623267 -44893770 - B1_Mus2 SINE Alu 0 147 2 1 1383 21 0 0 0 chr6 104623306 104623327 -44893710 + AT_rich Low_complexity Low_complexity 1 21 0 1 1383 14494 74 1 16 chr6 104625298 104627252 -44889785 - L1Md_F2 LINE L1 0 6582 4657 1 1383 6321 55 5 1 chr6 104627252 104628052 -44888985 - L1Md_F2 LINE L1 0 6582 5780 1 1383 14494 76 1 27 chr6 104628052 104628831 -44888206 - L1Md_F2 LINE L1 -1227 4656 3906 1 1383 434 269 111 142 chr6 104629204 104629590 -44887447 + MTE2a LTR MaLR 5 378 -1 1 1383 245 269 14 43 chr6 104629668 104629738 -44887299 - MER58A DNA MER1_type -110 114 47 1 1383 28 0 0 0 chr6 104630141 104630169 -44886868 + AT_rich Low_complexity Low_complexity 1 28 0 1 1383 456 19 0 0 chr6 104630413 104630466 -44886571 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1383 331 249 6 16 chr6 104630468 104630556 -44886481 + B3A SINE B2 17 101 -94 1 1383 252 0 0 0 chr6 104630596 104630624 -44886413 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1383 213 296 0 0 chr6 104630700 104630771 -44886266 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1383 244 167 21 0 chr6 104631676 104631724 -44885313 + MIR SINE MIR 212 260 -2 1 1383 28 29 0 0 chr6 104631917 104631952 -44885085 + AT_rich Low_complexity Low_complexity 1 35 0 1 1383 350 342 49 60 chr6 104632245 104632559 -44884478 + MTEa LTR MaLR 61 372 -7 1 1383 181 136 60 15 chr6 104634517 104634584 -44882453 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1383 277 296 0 0 chr6 104634845 104634916 -44882121 - B2_Mm2 SINE B2 -124 71 1 1 1383 2183 128 12 3 chr6 104635146 104635492 -44881545 - L1_Mus3 LINE L1 -3 6635 6287 1 1383 574 302 40 7 chr6 104635778 104635928 -44881109 - RSINE1 SINE B4 -1 164 10 1 1383 3022 85 2 0 chr6 104637222 104637632 -44879405 - L1_Mus1 LINE L1 -1 6566 6156 1 1383 570 227 37 15 chr6 104637667 104637801 -44879236 + B1_Mur2 SINE Alu 3 139 -10 1 1383 237 65 0 0 chr6 104637801 104637832 -44879205 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1383 33203 93 9 6 chr6 104639196 104645378 -44871659 - L1Md_F2 LINE L1 -2 6580 376 1 1383 405 0 0 0 chr6 104645398 104645443 -44871594 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 1 1383 305 212 30 15 chr6 104646298 104646365 -44870672 - ID4_ SINE ID -2 81 14 1 1383 691 273 164 4 chr6 104646620 104646870 -44870167 + B4 SINE B4 1 290 -2 1 1383 243 0 0 0 chr6 104647050 104647077 -44869960 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1383 578 309 158 15 chr6 104648863 104649198 -44867839 - Lx8 LINE L1 -5 7468 7086 1 1383 252 0 0 0 chr6 104649371 104649399 -44867638 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1383 1597 287 52 16 chr6 104649527 104650027 -44867010 - Lx8 LINE L1 -587 6886 6369 1 1383 22 35 0 0 chr6 104651410 104651439 -44865598 + AT_rich Low_complexity Low_complexity 1 29 0 2 1383 26 50 0 0 chr6 104651924 104651964 -44865073 + AT_rich Low_complexity Low_complexity 1 40 0 2 1383 614 316 83 17 chr6 104652890 104653250 -44863787 - L1M2 LINE L1 -1809 4334 3951 2 1383 480 249 152 34 chr6 104654107 104654344 -44862693 - RLTR10A LTR ERVK 0 411 147 2 1383 1876 286 66 39 chr6 104654389 104656551 -44860486 - IAP-d-int LTR ERVK -204 7040 3544 2 1383 275 258 30 30 chr6 104656611 104656711 -44860326 - IAP-d-int LTR ERVK -1706 3554 3455 2 1383 1384 297 27 10 chr6 104656729 104657316 -44859721 - IAP-d-int LTR ERVK -3961 3620 2689 2 1383 543 253 129 13 chr6 104657785 104658033 -44859004 - RLTR10A LTR ERVK 0 411 114 2 1383 234 231 51 13 chr6 104658067 104658146 -44858891 + RMER15 LTR ERVL 404 485 -90 2 1383 1774 174 53 3 chr6 104658147 104658469 -44858568 + ORR1A1 LTR MaLR 1 338 -8 2 1383 331 161 62 31 chr6 104658578 104658674 -44858363 + (CATAA)n Simple_repeat Simple_repeat 2 100 0 2 1383 21 0 0 0 chr6 104659637 104659658 -44857379 + AT_rich Low_complexity Low_complexity 1 21 0 2 1383 276 354 75 23 chr6 104660490 104660623 -44856414 + B1F SINE Alu 2 141 -8 2 1383 189 171 0 0 chr6 104660631 104660666 -44856371 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 2 1383 498 183 0 0 chr6 104661033 104661148 -44855889 + (TA)n Simple_repeat Simple_repeat 1 115 0 2 1383 212 343 51 64 chr6 104661407 104661703 -44855334 - L2 LINE L2 -693 2726 2435 2 1383 544 336 29 20 chr6 104661830 104662076 -44854961 - Lx7 LINE L1 -402 7294 7047 2 1383 1523 245 69 13 chr6 104662588 104662980 -44854057 - MTD LTR MaLR 0 419 6 2 1383 3579 85 0 25 chr6 104665594 104666103 -44850934 + L1Md_F2 LINE L1 6085 6580 -2 2 1383 281 135 19 0 chr6 104667179 104667231 -44849806 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 2 1383 375 23 0 0 chr6 104668599 104668643 -44848394 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 1383 929 182 0 0 chr6 104668805 104668970 -44848067 + Lx2B LINE L1 5841 6005 -995 2 1383 2542 67 12 0 chr6 104668970 104669280 -44847757 - ORR1A0 LTR MaLR 0 346 36 2 1383 13835 49 16 1 chr6 104669280 104671043 -44845994 - ORR1A1-int LTR MaLR -2 1790 1 2 1383 2542 67 12 0 chr6 104671043 104671074 -44845963 - ORR1A0 LTR MaLR -311 35 2 2 1383 3619 222 46 6 chr6 104671074 104671921 -44845116 + Lx3C LINE L1 6002 6882 -94 2 1383 226 208 0 0 chr6 104671891 104671944 -44845093 + Lx2B LINE L1 6934 6986 -11 2 1383 248 200 0 20 chr6 104671968 104672019 -44845018 - MTE2a LTR MaLR -323 56 7 2 1383 299 169 0 10 chr6 104672264 104672360 -44844677 + GA-rich Low_complexity Low_complexity 2 96 0 2 1383 345 93 0 0 chr6 104672736 104672790 -44844247 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1383 297 0 0 0 chr6 104672803 104672836 -44844201 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2 1383 348 321 135 22 chr6 104673038 104673267 -44843770 + L1ME2 LINE L1 5778 6032 -132 2 1383 299 86 29 86 chr6 104673276 104673416 -44843621 + T-rich Low_complexity Low_complexity 1 132 0 2 1383 1005 92 0 41 chr6 104673417 104673564 -44843473 - B1_Mus1 SINE Alu -7 141 1 2 1383 929 264 32 87 chr6 104673979 104674323 -44842714 - MT2B LTR ERVL 0 601 277 2 1383 1901 148 9 58 chr6 104674325 104674669 -44842368 + ORR1A2 LTR MaLR 1 327 0 2 1383 2816 158 52 17 chr6 104674669 104675211 -44841826 + ORR1A2-int LTR MaLR 1 561 -1402 2 1383 463 175 12 0 chr6 104675203 104675283 -44841754 + MT2B LTR ERVL 157 237 -364 2 1383 344 277 88 75 chr6 104675268 104675428 -44841609 - MTE2a LTR MaLR -217 162 1 2 1383 40 0 0 0 chr6 104675618 104675658 -44841379 + AT_rich Low_complexity Low_complexity 1 40 0 2 1383 23 0 0 0 chr6 104676415 104676438 -44840599 + AT_rich Low_complexity Low_complexity 1 23 0 2 1383 312 27 0 0 chr6 104678368 104678405 -44838632 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 1383 28 29 0 0 chr6 104678416 104678451 -44838586 + AT_rich Low_complexity Low_complexity 1 35 0 2 1383 260 53 0 26 chr6 104678526 104678565 -44838472 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1383 627 178 357 0 chr6 104679793 104679950 -44837087 - B3 SINE B2 0 216 4 2 1383 21 57 0 0 chr6 104679956 104679991 -44837046 + AT_rich Low_complexity Low_complexity 1 35 0 2 1383 183 352 58 72 chr6 104680294 104680432 -44836605 + MIRb SINE MIR 112 247 -21 2 1383 870 83 0 0 chr6 104680588 104680708 -44836329 + (GGAA)n Simple_repeat Simple_repeat 2 121 0 2 1383 232 299 0 29 chr6 104680877 104680946 -44836091 + C-rich Low_complexity Low_complexity 3 69 0 2 1383 330 26 0 0 chr6 104682661 104682700 -44834337 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1383 306 334 86 48 chr6 104682772 104683108 -44833929 - L1MEg LINE L1 -5044 1616 1268 2 1383 289 333 111 13 chr6 104683144 104683442 -44833595 - L1MEg LINE L1 -4982 1063 737 2 1383 373 93 40 20 chr6 104684049 104684148 -44832889 + A-rich Low_complexity Low_complexity 1 101 0 2 1383 8131 155 33 30 chr6 104684303 104685858 -44831179 - Lx LINE L1 -133 5750 4190 2 1383 4400 144 106 9 chr6 104685858 104686663 -44830374 + Lx LINE L1 5770 6652 -2 2 1383 195 69 0 0 chr6 104686672 104686701 -44830336 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1383 258 256 23 0 chr6 104686868 104686954 -44830083 + Lx9 LINE L1 7404 7491 -153 2 1383 1119 114 45 11 chr6 104687463 104687641 -44829396 - B2_Mm2 SINE B2 -11 184 1 2 1383 382 325 99 8 chr6 104688192 104688313 -44828724 + B3A SINE B2 29 160 -38 2 1383 318 87 0 0 chr6 104688327 104688373 -44828664 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1383 344 400 12 24 chr6 104689051 104689220 -44827817 - ID_B1 SINE B4 -55 169 3 2 1383 1101 71 6 6 chr6 104690168 104690325 -44826712 + L1_Mus2 LINE L1 6410 6566 0 2 1383 259 333 71 0 chr6 104690665 104690764 -44826273 - PB1D10 SINE Alu -11 106 1 2 1383 648 333 0 0 chr6 104691858 104692023 -44825014 - B3 SINE B2 -45 171 7 2 1383 315 290 86 48 chr6 104692031 104692241 -44824796 - L1MC3 LINE L1 -6 7779 7562 2 1383 729 304 78 36 chr6 104692285 104692847 -44824190 - L1MC3 LINE L1 -307 7478 6893 2 1383 396 322 60 69 chr6 104692874 104693091 -44823946 - B3 SINE B2 -1 215 1 2 1383 310 333 49 0 chr6 104693104 104693248 -44823789 - L1MC3 LINE L1 -926 6859 6709 2 1383 4312 218 103 9 chr6 104693426 104694503 -44822534 - RMER12 LTR ERVK -144 1178 1 2 1383 228 175 35 0 chr6 104695032 104695089 -44821948 - L1MC LINE L1 -1010 5323 5265 2 1383 4380 237 53 18 chr6 104695135 104696224 -44820813 - Lx6 LINE L1 0 7460 6334 2 1383 1315 141 22 49 chr6 104696225 104696515 -44820522 + MT2C_Mm LTR ERVL 210 475 0 2 1383 6358 195 153 86 chr6 104696515 104696908 -44820129 - L1_Mur3 LINE L1 -841 5039 4625 2 1383 201 39 0 0 chr6 104696908 104696934 -44820103 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1383 6358 195 153 86 chr6 104696934 104697257 -44819780 - L1_Mur3 LINE L1 -1256 4624 4281 2 1383 561 15 0 0 chr6 104697257 104697323 -44819714 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1383 6358 195 153 86 chr6 104697323 104698124 -44818913 - L1_Mur3 LINE L1 -1600 4280 3329 2 1383 478 268 23 39 chr6 104698124 104698252 -44818785 - B1_Mus1 SINE Alu -17 131 6 2 1383 274 238 43 129 chr6 104698152 104698268 -44818769 - MT2B LTR ERVL -344 257 152 2 1383 6358 195 153 86 chr6 104698268 104698755 -44818282 - L1_Mur3 LINE L1 -1600 3328 2748 2 1383 251 308 47 14 chr6 104698908 104699056 -44817981 - L1MC LINE L1 -1019 5127 4975 2 1383 22 35 0 0 chr6 104699061 104699090 -44817947 + AT_rich Low_complexity Low_complexity 1 29 0 2 1383 221 337 0 11 chr6 104699216 104699306 -44817731 + CT-rich Low_complexity Low_complexity 2 90 0 2 1383 237 276 134 15 chr6 104699429 104699631 -44817406 - L1MC LINE L1 -1487 4659 4434 2 1383 213 189 0 0 chr6 104699669 104699706 -44817331 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1383 201 74 0 0 chr6 104700277 104700304 -44816733 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1383 228 250 0 52 chr6 104700367 104700464 -44816573 + T-rich Low_complexity Low_complexity 2 93 0 2 1383 255 140 0 0 chr6 104700468 104700518 -44816519 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1383 714 242 79 14 chr6 104700561 104700775 -44816262 + Lx6 LINE L1 7206 7433 -27 2 1383 24 0 0 0 chr6 104701304 104701328 -44815709 + AT_rich Low_complexity Low_complexity 1 24 0 2 1383 1209 87 0 0 chr6 104701504 104701676 -44815361 + (TTCC)n Simple_repeat Simple_repeat 3 174 0 2 1383 462 158 0 0 chr6 104701931 104702013 -44815024 - RMER6C LTR ERVK -2 688 607 2 1383 6765 101 3 2 chr6 104702034 104702996 -44814041 - L1_Mus3 LINE L1 -6 6632 5670 2 1383 9567 141 7 4 chr6 104702993 104704577 -44812460 + L1_Mus3 LINE L1 3989 5577 -306 2 1383 416 83 0 0 chr6 104704683 104704745 -44812292 + L1_Mus3 LINE L1 5574 5641 -997 2 1383 929 258 127 63 chr6 104704745 104705269 -44811768 - RMER6C LTR ERVK -56 634 1 2 1383 210 71 0 0 chr6 104705482 104705510 -44811527 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1383 9795 136 46 72 chr6 104706708 104706837 -44810200 - RLTR22_Mur LTR ERVK 0 1848 1758 2 1383 1015 123 0 0 chr6 104706837 104706983 -44810054 - B1_Mus1 SINE Alu 0 148 3 2 1383 9795 136 46 72 chr6 104706983 104708751 -44808286 - RLTR22_Mur LTR ERVK -91 1757 1 2 1383 4572 32 27 2 chr6 104708870 104709432 -44807605 - L1Md_F3 LINE L1 -12 6572 5997 2 1383 484 325 13 44 chr6 104709884 104710042 -44806995 + B3A SINE B2 1 153 -45 2 1383 446 317 14 7 chr6 104710535 104710678 -44806359 - MLT1A0 LTR MaLR -13 352 209 2 1383 268 211 0 0 chr6 104710706 104710763 -44806274 - MLT1A0 LTR MaLR -224 141 85 2 1383 401 304 57 57 chr6 104712113 104712270 -44804767 + RSINE1 SINE B4 9 165 0 2 1383 317 256 60 12 chr6 104712618 104712701 -44804336 + MIRb SINE MIR 182 268 0 2 1383 252 149 0 0 chr6 104713057 104713104 -44803933 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1383 22 56 0 0 chr6 104713709 104713745 -44803292 + AT_rich Low_complexity Low_complexity 1 36 0 2 1383 251 316 72 36 chr6 104714414 104714552 -44802485 - B1F SINE Alu -6 143 1 2 1383 301 254 246 0 chr6 104714696 104714814 -44802223 + B1_Mur1 SINE Alu 3 149 0 2 1383 247 310 23 11 chr6 104715735 104715823 -44801214 + Charlie20a DNA Charlie 661 749 -58 2 1383 265 0 75 0 chr6 104717606 104717646 -44799391 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1383 273 294 63 63 chr6 104718178 104718305 -44798732 + B4A SINE B4 166 292 0 2 1383 310 297 234 0 chr6 104718761 104718936 -44798101 - B3 SINE B2 0 216 1 2 1383 33 56 0 0 chr6 104718944 104718998 -44798039 + AT_rich Low_complexity Low_complexity 1 54 0 2 1383 841 120 105 0 chr6 104720363 104720496 -44796541 + B1_Mm SINE Alu 1 147 0 2 1383 180 0 0 0 chr6 104720516 104720536 -44796501 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1383 322 351 59 33 chr6 104720537 104720690 -44796347 + B3A SINE B2 27 183 -15 2 1383 280 313 0 0 chr6 104720690 104720773 -44796264 + (CATA)n Simple_repeat Simple_repeat 2 84 0 2 1383 212 161 33 67 chr6 104721639 104721699 -44795338 - B3A SINE B2 -81 117 60 2 1383 585 42 0 0 chr6 104722984 104723056 -44793981 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1383 300 27 0 0 chr6 104723816 104723853 -44793184 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1383 189 175 0 0 chr6 104726041 104726081 -44790956 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1383 314 147 15 0 chr6 104726081 104726149 -44790888 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1383 23 54 0 0 chr6 104726456 104726493 -44790544 + AT_rich Low_complexity Low_complexity 1 37 0 3 1384 183 80 0 0 chr6 104728054 104728079 -44788958 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 3 1384 8643 119 22 25 chr6 104728081 104729120 -44787917 - Lx3A LINE L1 -18 6963 5919 3 1384 549 0 0 0 chr6 104729120 104729181 -44787856 + (TTTC)n Simple_repeat Simple_repeat 4 64 0 3 1384 8643 104 3 19 chr6 104729181 104729875 -44787162 - Lx3A LINE L1 -1063 5918 5248 3 1384 242 320 20 10 chr6 104730554 104730655 -44786382 + GA-rich Low_complexity Low_complexity 3 104 0 3 1384 236 186 17 0 chr6 104731112 104731171 -44785866 + GA-rich Low_complexity Low_complexity 1 60 0 3 1384 25 0 0 0 chr6 104731612 104731637 -44785400 + AT_rich Low_complexity Low_complexity 1 25 0 3 1384 345 82 0 0 chr6 104732675 104732724 -44784313 + (T)n Simple_repeat Simple_repeat 1 49 0 3 1384 2995 211 56 64 chr6 104732783 104732874 -44784163 - RMER1A Other Other -12 1018 921 3 1384 249 83 0 0 chr6 104732874 104732910 -44784127 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1384 2995 211 56 64 chr6 104732910 104733170 -44783867 - RMER1A Other Other -110 920 638 3 1384 564 15 0 0 chr6 104733170 104733235 -44783802 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 3 1384 251 28 28 0 chr6 104733240 104733276 -44783761 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1384 1143 50 0 0 chr6 104733279 104733418 -44783619 - B1_Mm SINE Alu -6 141 3 3 1384 2995 271 46 58 chr6 104733418 104734526 -44782511 - RMER1A Other Other -395 635 9 3 1384 949 248 126 42 chr6 104734840 104735173 -44781864 - ORR1D2 LTR MaLR -8 362 2 3 1384 215 367 0 0 chr6 104735237 104735316 -44781721 - L2b LINE L2 -1 3374 3296 3 1384 384 22 0 0 chr6 104735341 104735386 -44781651 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1384 222 398 76 23 chr6 104735407 104735538 -44781499 + MIRc SINE MIR 34 171 -97 3 1384 371 98 0 16 chr6 104736961 104737023 -44780014 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1384 609 114 0 0 chr6 104737024 104737129 -44779908 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 1384 550 375 39 14 chr6 104738021 104738305 -44778732 + B4A SINE B4 2 292 0 3 1384 432 183 130 24 chr6 104739586 104739709 -44777328 - L1_Mur2 LINE L1 -499 5381 5246 3 1384 1108 75 0 0 chr6 104739738 104739884 -44777153 - B1_Mm SINE Alu -1 146 1 3 1384 228 118 0 0 chr6 104739887 104739921 -44777116 - L1_Mm LINE L1 -585 5298 5265 3 1384 1344 169 4 4 chr6 104739921 104740176 -44776861 + Lx LINE L1 6397 6651 -3 3 1384 249 353 51 51 chr6 104740871 104741047 -44775990 - MIR SINE MIR -56 206 31 3 1384 288 143 0 0 chr6 104741196 104741252 -44775785 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1384 423 0 0 0 chr6 104741326 104741373 -44775664 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1384 203 191 0 21 chr6 104741387 104741435 -44775602 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1384 293 346 126 59 chr6 104741630 104741777 -44775260 - B4 SINE B4 -20 272 134 3 1384 1729 103 118 76 chr6 104741777 104742091 -44774946 - ORR1A2 LTR MaLR 0 327 1 3 1384 293 346 126 59 chr6 104742091 104742198 -44774839 - B4 SINE B4 -159 133 1 3 1384 225 119 0 0 chr6 104742922 104742964 -44774073 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 3 1384 329 326 54 0 chr6 104743809 104743901 -44773136 + B1F SINE Alu 22 118 -31 3 1384 217 380 0 0 chr6 104743872 104743951 -44773086 + B1F1 SINE Alu 61 139 -10 3 1384 228 313 45 0 chr6 104743995 104744062 -44772975 + ID4_ SINE ID 9 78 -5 3 1384 224 303 51 38 chr6 104744062 104744074 -44772963 + ID SINE ID 9 88 -136 3 1384 189 0 0 0 chr6 104744075 104744096 -44772941 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1384 396 0 0 0 chr6 104744327 104744371 -44772666 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1384 21 57 0 0 chr6 104744635 104744670 -44772367 + AT_rich Low_complexity Low_complexity 1 35 0 3 1384 458 291 37 79 chr6 104744800 104744830 -44772207 + ID SINE ID 14 41 -183 3 1384 3376 99 2 8 chr6 104744830 104745306 -44771731 - MT2C_Mm LTR ERVL -2 473 1 3 1384 458 291 37 79 chr6 104745306 104745439 -44771598 + ID_B1 SINE B4 42 170 -54 3 1384 462 168 64 122 chr6 104745518 104745674 -44771363 - Lx4B LINE L1 -5 7053 6907 3 1384 22 0 0 0 chr6 104745792 104745814 -44771223 + AT_rich Low_complexity Low_complexity 1 22 0 3 1384 255 223 18 71 chr6 104745855 104746024 -44771013 + (CATA)n Simple_repeat Simple_repeat 2 161 0 3 1384 233 293 68 41 chr6 104746114 104746260 -44770777 - MER2 DNA MER2_type -61 284 135 3 1384 231 88 0 0 chr6 104746504 104746538 -44770499 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1384 444 19 0 0 chr6 104746855 104746908 -44770129 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1384 784 114 0 15 chr6 104746909 104747042 -44769995 + (GGGAGA)n Simple_repeat Simple_repeat 3 133 0 3 1384 278 50 25 0 chr6 104747350 104747390 -44769647 + (TTAA)n Simple_repeat Simple_repeat 3 43 0 3 1384 324 0 0 0 chr6 104748036 104748072 -44768965 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1384 186 43 0 0 chr6 104748248 104748271 -44768766 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1384 326 250 0 28 chr6 104749345 104749452 -44767585 - RLTR9A LTR ERVK 0 368 265 3 1384 408 285 133 65 chr6 104749887 104750150 -44766887 - RLTR9A LTR ERVK -87 281 1 3 1384 411 145 0 0 chr6 104750192 104750275 -44766762 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1384 846 310 30 25 chr6 104750301 104750701 -44766336 + L1MA6 LINE L1 5896 6297 -3 3 1384 227 362 74 15 chr6 104750863 104751065 -44765972 - MIR SINE MIR -35 227 14 3 1384 482 342 69 40 chr6 104751215 104751462 -44765575 + B4A SINE B4 1 254 -38 3 1384 285 29 0 0 chr6 104753376 104753410 -44763627 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1384 992 109 0 21 chr6 104753410 104753550 -44763487 - B1_Mus2 SINE Alu -10 137 1 3 1384 1135 218 152 19 chr6 104754806 104755129 -44761908 - ORR1D1 LTR MaLR -4 370 5 3 1384 702 91 0 0 chr6 104756881 104756980 -44760057 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 1384 582 358 21 17 chr6 104756986 104757276 -44759761 - Lx8 LINE L1 -149 7324 7034 3 1384 26 30 0 0 chr6 104758262 104758295 -44758742 + AT_rich Low_complexity Low_complexity 1 33 0 3 1384 3681 70 2 0 chr6 104759899 104760372 -44756665 + L1_Mus1 LINE L1 6094 6567 0 3 1384 893 278 130 73 chr6 104761205 104761934 -44755103 - L1MA9 LINE L1 -204 6108 5338 3 1384 21 0 0 0 chr6 104762397 104762418 -44754619 + AT_rich Low_complexity Low_complexity 1 21 0 3 1384 27 62 0 0 chr6 104763135 104763183 -44753854 + AT_rich Low_complexity Low_complexity 1 48 0 3 1384 23 54 0 0 chr6 104763225 104763262 -44753775 + AT_rich Low_complexity Low_complexity 1 37 0 3 1384 449 268 31 8 chr6 104764564 104764692 -44752345 - MTEb LTR MaLR -5 374 244 3 1384 619 317 25 58 chr6 104764874 104765115 -44751922 - MTEb LTR MaLR -140 239 7 3 1384 522 307 57 22 chr6 104765236 104765552 -44751485 - L1MA7 LINE L1 -12 6279 5953 3 1384 2834 284 74 92 chr6 104765588 104766059 -44750978 + MER45R DNA Tip100 2 468 -1113 3 1384 1162 62 0 0 chr6 104766059 104766205 -44750832 - B1_Mus1 SINE Alu -1 147 2 3 1384 2834 284 74 92 chr6 104766205 104766280 -44750757 + MER45R DNA Tip100 469 525 -1056 3 1384 300 53 0 0 chr6 104766280 104766318 -44750719 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 1384 2834 284 74 92 chr6 104766318 104767317 -44749720 + MER45R DNA Tip100 526 1520 -61 3 1384 482 181 81 100 chr6 104767806 104767966 -44749071 - RLTR26 LTR ERVK -485 157 1 3 1384 14216 25 1 1 chr6 104768660 104771026 -44746011 - L1Md_A LINE L1 0 6582 4217 3 1384 312 188 0 0 chr6 104771172 104771241 -44745796 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1384 268 215 51 0 chr6 104771316 104771395 -44745642 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 3 1384 422 219 0 50 chr6 104771584 104771685 -44745352 + Lx7 LINE L1 7206 7301 -395 3 1384 254 269 50 16 chr6 104771690 104771811 -44745226 + Lx6 LINE L1 7336 7460 0 3 1384 21 36 0 0 chr6 104772409 104772437 -44744600 + AT_rich Low_complexity Low_complexity 1 28 0 3 1384 1620 227 32 88 chr6 104772476 104772974 -44744063 - RLTR11A2 LTR ERVK -1 526 57 3 1384 243 347 25 0 chr6 104773129 104773250 -44743787 - Lx7 LINE L1 -29 7667 7544 3 1384 2865 304 63 32 chr6 104773310 104774433 -44742604 - Lx7 LINE L1 -395 7301 6144 3 1384 2606 243 38 83 chr6 104774434 104775385 -44741652 + L1_Mur3 LINE L1 4963 5870 -10 3 1384 3116 162 21 18 chr6 104775451 104776011 -44741026 + Lx LINE L1 6085 6646 -8 3 1384 646 330 138 3 chr6 104776046 104776395 -44740642 - Lx8 LINE L1 -141 7332 6937 3 1384 30971 86 10 5 chr6 104776444 104781375 -44735662 + L1Md_F2 LINE L1 635 5585 -298 3 1384 7345 84 0 5 chr6 104781376 104782362 -44734675 + L1Md_F2 LINE L1 5587 6567 -15 3 1384 306 132 0 0 chr6 104783311 104783364 -44733673 + (A)n Simple_repeat Simple_repeat 1 53 0 3 1384 21 0 0 0 chr6 104783972 104783993 -44733044 + AT_rich Low_complexity Low_complexity 1 21 0 3 1384 4286 247 86 17 chr6 104784045 104785538 -44731499 + L1_Mur3 LINE L1 2996 4591 -1289 3 1384 2147 139 6 3 chr6 104786761 104787114 -44729923 + L1_Mus4 LINE L1 6276 6629 -7 3 1384 24 0 0 0 chr6 104787124 104787148 -44729889 + AT_rich Low_complexity Low_complexity 1 24 0 3 1384 283 281 198 70 chr6 104789373 104789545 -44727492 + RMER30 DNA MER1_type 8 201 -1 3 1384 459 0 0 0 chr6 104789745 104789796 -44727241 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1384 194 0 39 0 chr6 104789899 104789925 -44727112 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1384 333 316 51 0 chr6 104790630 104790728 -44726309 + MER20 DNA MER1_type 116 218 -1 3 1384 476 110 40 10 chr6 104791097 104791198 -44725839 + L1Md_F2 LINE L1 6478 6581 -1 3 1384 452 220 6 0 chr6 104792095 104792254 -44724783 + GA-rich Low_complexity Low_complexity 1 160 0 3 1384 405 0 0 0 chr6 104792291 104792336 -44724701 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1384 432 0 0 0 chr6 104792336 104792383 -44724654 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1384 1297 312 93 23 chr6 104792397 104793224 -44723813 - Lx9 LINE L1 -216 7428 6544 4 1384 210 91 0 0 chr6 104793436 104793469 -44723568 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 1384 398 355 42 21 chr6 104794193 104794337 -44722700 - RSINE1 SINE B4 0 165 19 4 1384 1247 32 0 0 chr6 104794380 104794536 -44722501 - L1Md_F3 LINE L1 -14 6570 6415 4 1384 423 0 0 0 chr6 104795416 104795463 -44721574 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1384 26 82 0 0 chr6 104796838 104796899 -44720138 + AT_rich Low_complexity Low_complexity 1 61 0 4 1384 432 0 0 0 chr6 104797565 104797613 -44719424 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1384 23 0 0 0 chr6 104797869 104797892 -44719145 + AT_rich Low_complexity Low_complexity 1 23 0 4 1384 5192 30 0 0 chr6 104798760 104799366 -44717671 - L1Md_T LINE L1 -2 6580 5975 4 1384 5929 16 0 0 chr6 104799366 104800053 -44716984 + L1_Mm LINE L1 3393 4079 -1804 4 1384 33 0 0 0 chr6 104800188 104800221 -44716816 + AT_rich Low_complexity Low_complexity 1 33 0 4 1384 766 191 36 17 chr6 104800788 104800955 -44716082 + ORR1B1 LTR MaLR 216 394 0 4 1384 423 163 21 28 chr6 104801094 104801119 -44715918 + polypyrimidine Low_complexity Low_complexity 121 144 0 4 1384 1171 90 6 11 chr6 104801119 104801299 -44715738 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 4 1384 423 163 21 28 chr6 104801299 104801418 -44715619 + CT-rich Low_complexity Low_complexity 1 120 0 4 1384 357 287 133 76 chr6 104801633 104801844 -44715193 - MLT1D LTR MaLR -21 484 262 4 1384 661 367 52 38 chr6 104801871 104802223 -44714814 + ORR1E LTR MaLR 4 375 -4 4 1384 1099 239 19 114 chr6 104802899 104803120 -44713917 - Lx9 LINE L1 -127 7517 7346 4 1384 1078 54 0 58 chr6 104803120 104803131 -44713906 - B1_Mm SINE Alu 0 147 139 4 1384 468 0 0 0 chr6 104803131 104803183 -44713854 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1384 1078 54 0 58 chr6 104803183 104803327 -44713710 - B1_Mm SINE Alu -9 138 1 4 1384 1099 239 19 114 chr6 104803327 104803587 -44713450 - Lx9 LINE L1 -299 7345 7082 4 1384 1000 236 28 4 chr6 104803574 104803854 -44713183 + Lx9 LINE L1 6813 7051 -593 4 1384 218 227 0 0 chr6 104805264 104805308 -44711729 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1384 181 319 0 0 chr6 104807690 104807737 -44709300 - L2c LINE L2 -36 3351 3305 4 1384 208 309 46 95 chr6 104808170 104808343 -44708694 + MIRc SINE MIR 3 172 -104 4 1384 7899 149 43 12 chr6 104809629 104810681 -44706356 - Lx2 LINE L1 -2 6995 5910 4 1384 234 0 0 0 chr6 104810681 104810707 -44706330 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1384 7899 160 33 11 chr6 104810707 104811166 -44705871 - Lx2 LINE L1 -1088 5909 5444 4 1384 2337 41 0 10 chr6 104812152 104812446 -44704591 - L1Md_F3 LINE L1 -14 6570 6280 4 1384 369 0 0 0 chr6 104812465 104812506 -44704531 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 4 1384 28 48 0 0 chr6 104812985 104813027 -44704010 + AT_rich Low_complexity Low_complexity 1 42 0 4 1384 842 314 52 38 chr6 104814401 104814824 -44702213 - Lx8 LINE L1 -6 7467 7039 4 1384 6099 139 48 58 chr6 104814833 104815133 -44701904 - Lx3_Mus LINE L1 0 7009 6697 4 1384 302 130 65 7 chr6 104815133 104815195 -44701842 - ORR1A4 LTR MaLR -255 123 27 4 1384 6099 139 48 58 chr6 104815195 104816009 -44701028 - Lx3_Mus LINE L1 0 6696 5846 4 1384 1717 187 53 90 chr6 104816086 104816485 -44700552 - ORR1B1 LTR MaLR -8 386 3 4 1384 237 333 0 0 chr6 104817021 104817090 -44699947 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1384 289 346 110 69 chr6 104818001 104818318 -44698719 - MLT2B4 LTR ERVL -210 346 17 4 1384 284 282 48 0 chr6 104818880 104818983 -44698054 - BC1_Mm scRNA scRNA -39 113 6 4 1384 258 349 157 0 chr6 104820573 104820656 -44696381 - B1F SINE Alu -50 99 4 4 1384 503 31 15 0 chr6 104822161 104822226 -44694811 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 4 1384 391 365 68 23 chr6 104822484 104822750 -44694287 + Lx8 LINE L1 6973 7250 -223 4 1384 236 240 142 14 chr6 104822773 104822921 -44694116 + Lx8 LINE L1 7304 7470 -3 4 1384 596 292 30 55 chr6 104823775 104824141 -44692896 + L1MA8 LINE L1 5780 6136 -155 4 1384 32 26 0 0 chr6 104824361 104824400 -44692637 + AT_rich Low_complexity Low_complexity 1 39 0 4 1384 317 360 36 7 chr6 104824436 104824573 -44692464 - RSINE1 SINE B4 -19 146 6 4 1384 32 26 0 0 chr6 104824912 104824951 -44692086 + AT_rich Low_complexity Low_complexity 1 39 0 4 1384 376 320 89 74 chr6 104825305 104825575 -44691462 + ORR1E LTR MaLR 64 337 -22 4 1384 693 348 89 16 chr6 104825778 104826160 -44690877 + MLT1D LTR MaLR 5 414 -91 4 1384 1085 152 70 14 chr6 104826304 104826517 -44690520 + Lx2 LINE L1 6773 6997 0 4 1384 243 263 0 0 chr6 104826529 104826647 -44690390 + (TG)n Simple_repeat Simple_repeat 1 118 0 4 1384 651 294 0 74 chr6 104826647 104826864 -44690173 - B3 SINE B2 -15 201 1 4 1384 232 167 0 0 chr6 104827840 104827888 -44689149 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1384 225 154 0 0 chr6 104828685 104828724 -44688313 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1384 185 321 83 0 chr6 104829553 104829637 -44687400 - MIRb SINE MIR -60 208 118 4 1384 297 0 0 0 chr6 104830206 104830239 -44686798 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4 1384 6635 163 13 9 chr6 104830241 104831407 -44685630 - Lx2 LINE L1 -27 6970 5795 4 1384 214 304 88 98 chr6 104831591 104831806 -44685231 - MIRb SINE MIR -51 217 5 4 1384 1326 217 44 114 chr6 104832483 104832572 -44684465 - ORR1B2 LTR MaLR -9 358 310 4 1384 1149 82 0 0 chr6 104832572 104832718 -44684319 - B1_Mm SINE Alu 0 147 2 4 1384 1326 217 44 114 chr6 104832718 104833013 -44684024 - ORR1B2 LTR MaLR -58 309 1 4 1384 246 272 86 19 chr6 104833013 104833111 -44683926 - RMER12 LTR ERVK -470 852 748 4 1384 3698 83 2 2 chr6 104833303 104833807 -44683230 - L1_Mus1 LINE L1 0 6567 6064 4 1384 888 54 0 0 chr6 104833807 104833918 -44683119 + L1_Mus1 LINE L1 5960 6070 -497 4 1384 302 193 121 0 chr6 104833919 104834002 -44683035 + RMER6B LTR ERVK 30 122 -339 4 1384 1221 174 245 42 chr6 104834002 104834337 -44682700 + RMER6B LTR ERVK 59 461 0 4 1384 266 295 0 0 chr6 104835773 104835850 -44681187 - ID4 SINE ID -65 87 11 4 1384 765 308 13 42 chr6 104836055 104836292 -44680745 + B4 SINE B4 40 269 -23 4 1384 432 104 0 0 chr6 104836292 104836359 -44680678 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1384 27 49 0 0 chr6 104837017 104837058 -44679979 + AT_rich Low_complexity Low_complexity 1 41 0 4 1384 312 27 0 0 chr6 104837125 104837162 -44679875 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1384 2233 185 9 5 chr6 104837410 104837855 -44679182 - RMER6A LTR ERVK 0 756 310 4 1384 1354 212 24 39 chr6 104837853 104838191 -44678846 - RMER6A LTR ERVK -367 389 57 4 1384 189 352 0 0 chr6 104838943 104838997 -44678040 - L2b LINE L2 -11 3364 3311 4 1384 428 275 264 0 chr6 104839298 104839525 -44677512 - B4A SINE B4 -4 288 2 4 1384 287 259 12 12 chr6 104839625 104839711 -44677326 + MIRc SINE MIR 163 248 -20 4 1384 38 68 0 0 chr6 104840329 104840402 -44676635 + AT_rich Low_complexity Low_complexity 1 73 0 4 1384 195 69 0 0 chr6 104840408 104840437 -44676600 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1384 438 329 13 32 chr6 104841311 104841465 -44675572 + B4A SINE B4 1 151 -141 4 1384 2342 186 72 16 chr6 104841651 104842204 -44674833 - RLTR31A_Mm LTR ERVK 0 584 1 4 1384 25 0 0 0 chr6 104843265 104843290 -44673747 + AT_rich Low_complexity Low_complexity 1 25 0 4 1384 1384 174 36 51 chr6 104844216 104844550 -44672487 + ORR1A4 LTR MaLR 1 329 0 4 1384 213 39 0 0 chr6 104844788 104844814 -44672223 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1384 31 107 0 0 chr6 104845011 104845133 -44671904 + AT_rich Low_complexity Low_complexity 1 122 0 4 1384 247 272 25 22 chr6 104845439 104845534 -44671503 + L1M5 LINE L1 4017 4121 -2025 4 1384 225 268 30 45 chr6 104845559 104845692 -44671345 + A-rich Low_complexity Low_complexity 3 133 0 4 1384 432 288 77 30 chr6 104845810 104846043 -44670994 + L1M5 LINE L1 4454 4697 -1449 4 1384 507 33 0 0 chr6 104846213 104846274 -44670763 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1384 616 260 56 42 chr6 104846589 104846802 -44670235 + B3 SINE B2 1 216 0 4 1384 33019 75 30 23 chr6 104847851 104853020 -44664017 + L1Md_F2 LINE L1 377 5586 -297 4 1384 7987 50 1 1 chr6 104853020 104854007 -44663030 + L1Md_F2 LINE L1 5587 6573 -9 4 1384 253 186 0 0 chr6 104854052 104854095 -44662942 + L1_Mur3 LINE L1 93 135 -7577 4 1384 581 248 51 0 chr6 104854087 104854224 -44662813 + L1_Mur3 LINE L1 525 668 -7044 4 1384 286 188 14 0 chr6 104854220 104854289 -44662748 + Lx5 LINE L1 6971 7040 -10 4 1384 887 66 22 32 chr6 104854282 104854421 -44662616 - L1Md_F3 LINE L1 -1223 5758 5622 4 1384 401 68 0 0 chr6 104854409 104854468 -44662569 - L1Md_F3 LINE L1 -1404 4479 4421 4 1384 326 80 0 20 chr6 104854532 104854583 -44662454 + (TAAG)n Simple_repeat Simple_repeat 2 51 0 4 1384 5036 247 60 34 chr6 104854590 104856741 -44660296 + Lx6 LINE L1 4989 7185 -275 4 1384 345 100 0 0 chr6 104857263 104857313 -44659724 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1385 29688 115 4 29 chr6 104858912 104860191 -44656846 - L1_Mus2 LINE L1 0 6566 5314 4 1385 302 0 0 0 chr6 104860191 104860226 -44656811 - U2 snRNA snRNA -153 35 1 4 1385 29688 115 4 29 chr6 104860226 104864907 -44652130 - L1_Mus2 LINE L1 0 5313 725 4 1385 416 287 25 6 chr6 104864893 104865051 -44651986 - L1_Mus2 LINE L1 -5790 826 666 4 1385 2342 202 121 16 chr6 104865055 104865608 -44651429 + RMER19C LTR ERVK 1 611 0 4 1385 220 27 26 26 chr6 104865779 104865817 -44651220 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1385 492 153 0 0 chr6 104866678 104866763 -44650274 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 4 1385 772 255 38 19 chr6 104866793 104867005 -44650032 - B3 SINE B2 0 216 1 4 1385 29 70 0 0 chr6 104869926 104869983 -44647054 + AT_rich Low_complexity Low_complexity 1 57 0 4 1385 3355 285 62 47 chr6 104870070 104870113 -44646924 - Lx9 LINE L1 -171 7473 7429 4 1385 395 92 0 15 chr6 104870113 104870179 -44646858 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1385 3355 285 62 47 chr6 104870179 104871451 -44645586 - Lx9 LINE L1 -216 7428 6139 4 1385 683 110 0 0 chr6 104871732 104871841 -44645196 - L1_Mus2 LINE L1 0 6566 6458 4 1385 1908 110 65 7 chr6 104872006 104872298 -44644739 + RLTR27 LTR ERVK 1 309 0 4 1385 207 0 0 0 chr6 104872346 104872369 -44644668 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1385 361 291 87 17 chr6 104873054 104873254 -44643783 + MIR SINE MIR 46 252 -10 5 1385 521 266 31 10 chr6 104873302 104873470 -44643567 + B3 SINE B2 2 179 -14 5 1385 1304 154 137 58 chr6 104874091 104874470 -44642567 + RLTR9E LTR ERVK 1 409 0 5 1385 386 232 108 19 chr6 104874543 104874697 -44642340 - L1MA5A LINE L1 -340 5957 5794 5 1385 1539 188 79 46 chr6 104875787 104876155 -44640882 - ORR1C2 LTR MaLR 0 384 5 5 1385 607 302 6 6 chr6 104876920 104877080 -44639957 + ORR1D2 LTR MaLR 1 160 -210 5 1385 242 295 85 9 chr6 104878369 104878475 -44638562 + MamRep564 Unknown Unknown 105 218 -139 5 1385 435 306 19 90 chr6 104879786 104879998 -44637039 - B3A SINE B2 0 198 2 5 1385 295 375 39 43 chr6 104880327 104880581 -44636456 - LFSINE_Vert SINE SINE -72 387 135 5 1385 779 301 52 52 chr6 104881049 104881430 -44635607 + MTEa LTR MaLR 1 353 -6 5 1385 24 0 0 0 chr6 104881567 104881591 -44635446 + AT_rich Low_complexity Low_complexity 1 24 0 5 1385 31 26 0 0 chr6 104882855 104882893 -44634144 + AT_rich Low_complexity Low_complexity 1 38 0 5 1385 244 284 0 15 chr6 104882905 104882973 -44634064 + B4 SINE B4 8 74 -218 5 1385 294 297 33 11 chr6 104883031 104883123 -44633914 + B4 SINE B4 197 290 -2 5 1385 24 53 0 0 chr6 104883181 104883219 -44633818 + AT_rich Low_complexity Low_complexity 1 38 0 5 1385 315 0 0 0 chr6 104883249 104883284 -44633753 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1385 201 39 0 0 chr6 104883738 104883764 -44633273 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1385 1608 261 31 22 chr6 104884951 104885366 -44631671 + MTD LTR MaLR 1 419 0 5 1385 1521 219 66 0 chr6 104885372 104885705 -44631332 + MTC LTR MaLR 6 360 -61 5 1385 1832 145 6 59 chr6 104885708 104886045 -44630992 - ORR1A2 LTR MaLR -8 319 1 5 1385 365 164 29 15 chr6 104886045 104886112 -44630925 + MTC LTR MaLR 352 419 0 5 1385 1603 62 7 3 chr6 104886865 104887074 -44629963 - L1Md_T LINE L1 -229 6353 6167 5 1385 1671 47 28 0 chr6 104887074 104887287 -44629750 + L1Md_A LINE L1 6362 6580 -2 5 1385 356 176 59 0 chr6 104887700 104887802 -44629235 + Lx5 LINE L1 6943 7050 0 5 1385 1097 164 0 5 chr6 104887826 104888022 -44629015 + B2_Mm2 SINE B2 1 195 0 5 1385 549 178 59 32 chr6 104888216 104888402 -44628635 + Lx9 LINE L1 7364 7554 -90 5 1385 2240 174 82 22 chr6 104889102 104889174 -44627863 - RLTR19 LTR ERVK -8 491 430 5 1385 396 0 0 0 chr6 104889174 104889218 -44627819 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1385 2240 174 82 22 chr6 104889218 104889608 -44627429 - RLTR19 LTR ERVK -70 429 2 5 1385 354 340 83 35 chr6 104890036 104890268 -44626769 + MLT1A LTR MaLR 85 366 -42 5 1385 2599 160 130 38 chr6 104890268 104890900 -44626137 - RMER6C LTR ERVK 0 690 1 5 1385 283 322 68 27 chr6 104890900 104890919 -44626118 + MLT1A LTR MaLR 367 384 -24 5 1385 308 321 22 22 chr6 104891995 104892132 -44624905 - B1F SINE Alu -11 138 2 5 1385 233 57 29 0 chr6 104894365 104894400 -44622637 + (TTA)n Simple_repeat Simple_repeat 1 36 0 5 1385 1054 122 0 0 chr6 104894641 104894788 -44622249 + B1_Mus1 SINE Alu 2 148 0 5 1385 22 35 0 0 chr6 104895015 104895044 -44621993 + AT_rich Low_complexity Low_complexity 1 29 0 5 1385 180 0 0 0 chr6 104895566 104895586 -44621451 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1385 4227 112 25 3 chr6 104895586 104896221 -44620816 - Lx3_Mus LINE L1 -21 6988 6340 5 1385 189 0 0 0 chr6 104896713 104896734 -44620303 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1385 233 326 48 41 chr6 104897142 104897289 -44619748 - Tigger9a DNA Tigger -539 193 46 5 1385 386 369 53 11 chr6 104897501 104897690 -44619347 - LTR16B LTR ERVL -132 331 135 5 1385 297 0 0 0 chr6 104898137 104898170 -44618867 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1385 189 0 0 0 chr6 104898213 104898234 -44618803 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 1385 243 215 30 30 chr6 104898262 104898329 -44618708 + B4A SINE B4 2 68 -224 5 1385 293 257 36 22 chr6 104898497 104898636 -44618401 + GA-rich Low_complexity Low_complexity 2 142 0 5 1385 558 0 0 0 chr6 104898640 104898702 -44618335 + (GGGAA)n Simple_repeat Simple_repeat 3 64 0 5 1385 267 247 12 12 chr6 104899162 104899244 -44617793 - Lx8 LINE L1 0 7473 7392 5 1385 219 36 0 0 chr6 104899337 104899365 -44617672 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1385 698 270 74 0 chr6 104899406 104899595 -44617442 - Lx8 LINE L1 -254 7219 7017 5 1385 255 159 79 0 chr6 104900597 104900660 -44616377 + PB1D10 SINE Alu 44 111 -6 5 1385 295 109 22 0 chr6 104900616 104900662 -44616375 + ID_B1 SINE B4 174 220 -4 5 1385 21 36 0 0 chr6 104901260 104901288 -44615749 + AT_rich Low_complexity Low_complexity 1 28 0 5 1385 24 53 0 0 chr6 104901443 104901481 -44615556 + AT_rich Low_complexity Low_complexity 1 38 0 5 1385 1158 152 19 19 chr6 104901570 104901778 -44615259 + Lx2 LINE L1 6789 6996 -1 5 1385 482 230 0 0 chr6 104902061 104902148 -44614889 + B1_Mur2 SINE Alu 53 139 -10 5 1385 252 86 0 0 chr6 104902148 104902183 -44614854 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1385 434 345 60 18 chr6 104902611 104902779 -44614258 - B3A SINE B2 -23 175 1 5 1385 8212 40 5 0 chr6 104902858 104904130 -44612907 - L1Md_F3 LINE L1 -14 6570 5294 5 1385 31413 56 7 121 chr6 104904134 104911148 -44605889 - L1Md_A LINE L1 0 6582 411 5 1385 184 375 37 45 chr6 104911582 104911716 -44605321 + MIR SINE MIR 6 138 -124 5 1385 360 0 0 0 chr6 104911904 104911944 -44605093 + (TTA)n Simple_repeat Simple_repeat 3 42 0 5 1385 1546 167 56 12 chr6 104911944 104912266 -44604771 - Lx3C LINE L1 -6 6970 6635 5 1385 1359 67 0 0 chr6 104912269 104912448 -44604589 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 5 1385 643 105 0 34 chr6 104912448 104912566 -44604471 - Lx LINE L1 -3 6651 6538 5 1385 850 87 55 8 chr6 104912576 104912704 -44604333 - Lx LINE L1 -309 6345 6212 5 1385 1210 144 96 0 chr6 104912705 104912913 -44604124 + L1_Mm LINE L1 5465 5692 -191 5 1385 2310 188 79 28 chr6 104912911 104913419 -44603618 - Lx3C LINE L1 -329 6647 6114 5 1385 11836 148 20 48 chr6 104913419 104915792 -44601245 + Lx3C LINE L1 3174 5479 -407 5 1385 1487 179 38 3 chr6 104915787 104916078 -44600959 + Lx3C LINE L1 5789 6089 -887 5 1385 21 0 0 0 chr6 104916379 104916400 -44600637 + AT_rich Low_complexity Low_complexity 1 21 0 5 1385 580 288 28 6 chr6 104916522 104916700 -44600337 - Lx6 LINE L1 -8 7452 7271 5 1385 705 277 28 6 chr6 104916727 104916905 -44600132 - Lx6 LINE L1 -300 7160 6979 5 1385 191 88 29 0 chr6 104917319 104917353 -44599684 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1385 2694 103 29 17 chr6 104917822 104918238 -44598799 + BGLII LTR ERVK 1 421 0 5 1385 559 198 20 0 chr6 104918242 104918343 -44598694 + MTD LTR MaLR 3 105 -314 5 1385 1039 66 13 13 chr6 104918357 104918510 -44598527 + (TTTTC)n Simple_repeat Simple_repeat 3 155 0 5 1385 327 203 0 0 chr6 104918510 104918579 -44598458 + CT-rich Low_complexity Low_complexity 1 69 0 5 1385 369 62 0 0 chr6 104918579 104918627 -44598410 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 5 1385 1036 234 16 84 chr6 104918627 104918950 -44598087 + MTD LTR MaLR 119 407 -12 5 1385 180 0 0 0 chr6 104919120 104919140 -44597897 + (CTATA)n Simple_repeat Simple_repeat 5 24 0 5 1385 2114 182 5 21 chr6 104919141 104919572 -44597465 - L1_Mur2 LINE L1 -497 5380 4957 5 1385 2461 128 27 3 chr6 104919565 104919940 -44597097 + Lx2A1 LINE L1 6306 6689 -319 5 1385 949 156 5 11 chr6 104919940 104920128 -44596909 + Lx2A1 LINE L1 6822 7008 0 5 1385 230 318 16 0 chr6 104920635 104920698 -44596339 + ID SINE ID 15 78 -146 5 1385 815 0 11 0 chr6 104922124 104922219 -44594818 + (TTC)n Simple_repeat Simple_repeat 2 97 0 5 1385 469 248 124 93 chr6 104922229 104922702 -44594335 + RLTR11B LTR ERVK 7 559 -9 5 1385 2755 149 163 0 chr6 104923100 104923602 -44593435 - MT2B2 LTR ERVL 0 584 1 5 1385 180 135 0 0 chr6 104925265 104925302 -44591735 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1385 562 358 28 14 chr6 104925550 104925836 -44591201 - B4A SINE B4 -2 290 1 5 1385 378 0 0 0 chr6 104926317 104926359 -44590678 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1385 279 0 0 0 chr6 104926359 104926389 -44590648 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1385 597 242 52 16 chr6 104926560 104926753 -44590284 - Lx7 LINE L1 -333 7363 7164 5 1385 27 29 0 0 chr6 104926831 104926865 -44590172 + AT_rich Low_complexity Low_complexity 1 34 0 5 1385 403 309 116 7 chr6 104926865 104927158 -44589879 + L1MC1 LINE L1 5659 5983 -350 5 1385 1966 312 61 49 chr6 104927257 104928258 -44588779 - Lx8 LINE L1 -15 7458 6446 5 1385 1438 236 157 9 chr6 104928318 104928776 -44588261 - Lx7 LINE L1 -285 7411 6886 5 1385 904 231 27 13 chr6 104929016 104929240 -44587797 - Lx7 LINE L1 -827 6869 6643 5 1385 432 0 0 0 chr6 104929258 104929306 -44587731 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1385 280 216 0 19 chr6 104929394 104929498 -44587539 + (TATG)n Simple_repeat Simple_repeat 2 103 0 5 1385 721 294 46 28 chr6 104929501 104929714 -44587323 - B4A SINE B4 0 292 83 5 1385 387 0 0 0 chr6 104929714 104929757 -44587280 + (TAA)n Simple_repeat Simple_repeat 3 45 0 5 1385 721 294 46 28 chr6 104929757 104929827 -44587210 - B4A SINE B4 -210 82 5 5 1385 189 0 0 0 chr6 104930451 104930472 -44586565 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1385 180 0 0 0 chr6 104930485 104930505 -44586532 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1385 981 168 0 0 chr6 104931170 104931349 -44585688 + GA-rich Low_complexity Low_complexity 2 180 0 5 1385 288 0 0 0 chr6 104931349 104931381 -44585656 + (GAAAA)n Simple_repeat Simple_repeat 1 32 0 5 1385 557 28 0 14 chr6 104931625 104931697 -44585340 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1385 333 275 126 85 chr6 104931697 104932015 -44585022 - MER67D LTR ERV1 -183 331 1 5 1385 315 0 0 0 chr6 104932599 104932634 -44584403 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1385 7651 73 14 7 chr6 104932692 104933727 -44583310 + L1_Mus3 LINE L1 5589 6630 -8 5 1385 333 340 20 0 chr6 104933848 104933948 -44583089 + RSINE1 SINE B4 47 148 -17 5 1385 291 54 0 0 chr6 104934856 104934893 -44582144 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 5 1385 255 261 94 42 chr6 104935724 104935820 -44581217 + RSINE1 SINE B4 4 104 -61 6 1385 255 61 0 0 chr6 104935847 104935880 -44581157 + (TAA)n Simple_repeat Simple_repeat 2 34 0 6 1385 617 259 15 0 chr6 104935898 104936033 -44581004 + B1_Mur2 SINE Alu 2 138 -11 6 1385 1111 109 0 0 chr6 104936912 104937059 -44579978 + B1_Mus1 SINE Alu 2 148 0 6 1385 860 308 100 2 chr6 104937083 104937513 -44579524 - L1MA6 LINE L1 -52 6248 5777 6 1385 1068 85 0 0 chr6 104937807 104937960 -44579077 + (TTC)n Simple_repeat Simple_repeat 3 155 0 6 1385 537 126 0 0 chr6 104937960 104938071 -44578966 + (CTG)n Simple_repeat Simple_repeat 2 112 0 6 1385 453 171 26 0 chr6 104938078 104938195 -44578842 + CT-rich Low_complexity Low_complexity 2 121 0 6 1385 211 141 54 40 chr6 104938222 104938296 -44578741 + CT-rich Low_complexity Low_complexity 5 79 0 6 1385 1647 206 47 33 chr6 104939087 104939516 -44577521 - MTB_Mm LTR MaLR 0 419 7 6 1385 2293 181 70 32 chr6 104940902 104941403 -44575634 - RLTR28 LTR ERVL -2 522 3 6 1385 2185 334 46 20 chr6 104941579 104942643 -44574394 - Lx8 LINE L1 -29 7444 6353 6 1385 336 24 0 0 chr6 104944324 104944365 -44572672 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1385 423 0 0 0 chr6 104944365 104944411 -44572626 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1385 278 350 55 14 chr6 104945541 104945686 -44571351 + L2 LINE L2 2655 2805 -614 6 1385 278 312 26 0 chr6 104946095 104946172 -44570865 - PB1D7 SINE Alu -15 105 27 6 1385 318 283 150 0 chr6 104946475 104946595 -44570442 - B1_Mus1 SINE Alu -8 140 3 6 1385 316 357 38 15 chr6 104947045 104947176 -44569861 - ID_B1 SINE B4 -10 214 81 6 1385 387 0 0 0 chr6 104948259 104948302 -44568735 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1385 1753 157 9 60 chr6 104948846 104949193 -44567844 + ORR1A4 LTR MaLR 1 329 0 6 1385 314 290 28 65 chr6 104950911 104951018 -44566019 - MTEa LTR MaLR -26 353 251 6 1385 386 359 5 96 chr6 104951025 104951213 -44565824 - MTE-int LTR MaLR -365 1215 1045 6 1385 1675 179 14 39 chr6 104951239 104951460 -44565577 + RLTR15 LTR ERVK 8 222 -137 6 1385 1021 80 7 7 chr6 104951460 104951598 -44565439 + B1_Mus1 SINE Alu 2 139 -9 6 1385 288 0 85 0 chr6 104951598 104951645 -44565392 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 1385 1675 179 14 39 chr6 104951645 104951783 -44565254 + RLTR15 LTR ERVK 223 358 -1 6 1385 1983 345 79 47 chr6 104951870 104952961 -44564076 - MTE-int LTR MaLR -437 1143 18 6 1385 564 337 37 101 chr6 104953000 104953327 -44563710 - ORR1E LTR MaLR -45 314 9 6 1385 203 395 53 10 chr6 104953571 104953778 -44563259 - L2 LINE L2 -523 2896 2681 6 1385 1203 35 7 0 chr6 104954001 104954146 -44562891 + B1_Mus2 SINE Alu 2 147 0 6 1385 2244 117 6 17 chr6 104954210 104954558 -44562479 - RLTR9D LTR ERVK 0 403 60 6 1385 27 29 0 0 chr6 104954612 104954646 -44562391 + AT_rich Low_complexity Low_complexity 1 34 0 6 1385 555 43 0 0 chr6 104955041 104955111 -44561926 + RLTR9D LTR ERVK 2 71 -332 6 1385 790 233 20 0 chr6 104955111 104955313 -44561724 + L1_Mur3 LINE L1 5151 5356 -524 6 1385 1978 267 45 9 chr6 104955300 104955837 -44561200 + Lx7 LINE L1 6764 7319 -377 6 1385 370 233 154 53 chr6 104955872 104956099 -44560938 + Lx7 LINE L1 7447 7696 0 6 1385 531 176 328 0 chr6 104956350 104956481 -44560556 - RMER13A LTR ERVK 0 860 687 6 1385 2125 159 116 12 chr6 104956473 104956894 -44560143 - RMER13A LTR ERVK -395 465 1 6 1385 3447 203 15 47 chr6 104957088 104957904 -44559133 - Lx2B LINE L1 -501 6499 5710 6 1385 854 166 88 6 chr6 104957905 104958075 -44558962 + Lx2B LINE L1 6506 6689 -311 6 1385 30 59 0 0 chr6 104958443 104958494 -44558543 + AT_rich Low_complexity Low_complexity 1 51 0 6 1385 400 333 30 45 chr6 104958807 104959008 -44558029 + B3A SINE B2 1 198 0 6 1385 369 0 0 0 chr6 104959590 104959631 -44557406 + (TAA)n Simple_repeat Simple_repeat 3 43 0 6 1385 1113 68 0 36 chr6 104960196 104960363 -44556674 + L1Md_F2 LINE L1 6421 6581 -1 6 1385 4188 98 8 24 chr6 104960621 104961144 -44555893 - Lx3A LINE L1 -682 6299 5786 6 1385 3421 52 31 9 chr6 104961144 104961593 -44555444 - L1Md_F2 LINE L1 0 6582 6124 6 1385 4188 98 8 24 chr6 104961593 104961695 -44555342 - Lx3A LINE L1 -1196 5785 5684 6 1385 3835 126 62 14 chr6 104961695 104962337 -44554700 + Lx3A LINE L1 6300 6972 -9 6 1385 240 59 0 0 chr6 104962345 104962379 -44554658 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 6 1385 444 51 0 0 chr6 104965768 104965827 -44551210 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1385 207 0 0 0 chr6 104965827 104965850 -44551187 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1385 246 324 0 14 chr6 104965854 104965926 -44551111 - B3A SINE B2 -48 150 80 6 1385 279 114 0 0 chr6 104966795 104966839 -44550198 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 1385 240 339 17 0 chr6 104967953 104968130 -44548907 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1385 3782 140 91 32 chr6 104968738 104969416 -44547621 + Lx2 LINE L1 6274 6991 -6 6 1385 798 282 51 51 chr6 104969570 104969940 -44547097 - ORR1D2 LTR MaLR 0 370 1 6 1385 192 40 0 0 chr6 104970031 104970056 -44546981 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1385 541 266 16 8 chr6 104972044 104972173 -44544864 - RSINE1 SINE B4 -29 136 7 6 1385 606 133 0 32 chr6 104974159 104974252 -44542785 + B1_Mus2 SINE Alu 57 146 -1 6 1385 4082 240 66 61 chr6 104974438 104975756 -44541281 - Lx7 LINE L1 0 7696 6372 6 1385 21 0 0 0 chr6 104975928 104975949 -44541088 + AT_rich Low_complexity Low_complexity 1 21 0 6 1385 2492 202 68 28 chr6 104975993 104977027 -44540010 - Lx7 LINE L1 -1326 6370 5306 6 1385 378 0 0 0 chr6 104978219 104978261 -44538776 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1385 1768 219 14 24 chr6 104978319 104978689 -44538348 - ORR1D1 LTR MaLR -8 366 1 6 1385 1769 305 71 59 chr6 104979519 104980456 -44536581 - Lx5 LINE L1 0 7460 6184 6 1385 605 175 41 24 chr6 104980459 104980582 -44536455 + Lx5 LINE L1 5807 5931 -1119 6 1385 3031 51 95 44 chr6 104980582 104981034 -44536003 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1385 4744 65 20 32 chr6 104981035 104981697 -44535340 + IAPEz-int LTR ERVK 9 662 -5819 6 1385 2703 58 0 3 chr6 104981697 104982040 -44534997 + IAPEz-int LTR ERVK 1359 1700 -4781 6 1385 6479 56 12 7 chr6 104982033 104982858 -44534179 + IAPEz-int LTR ERVK 5651 6479 -2 6 1385 3019 53 95 44 chr6 104982860 104983312 -44533725 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1385 549 257 81 19 chr6 104983312 104983522 -44533515 + Lx5 LINE L1 5926 6148 -902 6 1385 22 35 0 0 chr6 104985484 104985513 -44531524 + AT_rich Low_complexity Low_complexity 1 29 0 6 1385 252 143 0 0 chr6 104986173 104986215 -44530822 + (TTA)n Simple_repeat Simple_repeat 2 43 0 6 1385 5514 106 32 10 chr6 104986622 104987442 -44529595 + L1_Mus3 LINE L1 5801 6638 0 6 1385 190 136 45 0 chr6 104987629 104987673 -44529364 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1385 22 35 0 0 chr6 104987818 104987847 -44529190 + AT_rich Low_complexity Low_complexity 1 29 0 6 1385 219 250 21 0 chr6 104987960 104988008 -44529029 + CT-rich Low_complexity Low_complexity 4 52 0 6 1385 23 33 0 0 chr6 104988392 104988422 -44528615 + AT_rich Low_complexity Low_complexity 1 30 0 6 173 1211 202 162 8 chr6 104988492 104988751 -44528286 - Lx5 LINE L1 -20 7030 6732 6 1386 23 0 0 0 chr6 104989452 104989475 -44527562 + AT_rich Low_complexity Low_complexity 1 23 0 6 1386 1711 296 80 16 chr6 104989481 104990041 -44526996 - Lx5 LINE L1 0 7050 6455 6 1386 3275 57 0 0 chr6 104990082 104990488 -44526549 - L1_Mus1 LINE L1 0 6567 6162 6 1386 1141 72 0 0 chr6 104990488 104990641 -44526396 + L1_Mus1 LINE L1 5919 6071 -496 6 1386 204 40 0 0 chr6 104990772 104990797 -44526240 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1386 233 420 63 38 chr6 104990949 104991422 -44525615 - MLT1F2 LTR MaLR -30 530 46 6 1386 285 354 56 0 chr6 104991828 104991972 -44525065 - LTR40a LTR ERVL -352 167 16 6 1386 23 0 0 0 chr6 104992032 104992055 -44524982 + AT_rich Low_complexity Low_complexity 1 23 0 6 1386 4604 165 9 8 chr6 104992466 104993246 -44523791 - Lx3B LINE L1 -37 6936 6156 6 1386 1119 82 0 0 chr6 104994200 104994346 -44522691 - B1_Mus2 SINE Alu 0 147 2 6 1386 1534 237 71 8 chr6 104995599 104995952 -44521085 - MTC LTR MaLR -35 386 12 6 1386 823 210 6 17 chr6 104996132 104996311 -44520726 - URR1A DNA MER1_type 0 226 50 6 1386 336 102 0 0 chr6 104996338 104996387 -44520650 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1386 195 129 0 0 chr6 104996481 104996512 -44520525 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1386 994 123 7 0 chr6 104996512 104996658 -44520379 - B1_Mm SINE Alu 0 147 1 6 1386 706 310 70 42 chr6 104997090 104997376 -44519661 + ORR1E LTR MaLR 1 294 -65 6 1386 3161 227 48 3 chr6 104997387 104998073 -44518964 - Lx5 LINE L1 -1 7049 6333 6 1386 3074 184 44 12 chr6 104998071 104999019 -44518018 + Lx5 LINE L1 5348 6332 -718 6 1386 947 327 87 50 chr6 105000948 105001525 -44515512 - MTE-int LTR MaLR -27 1553 956 1 1386 721 314 91 38 chr6 105002016 105002357 -44514680 - MTE-int LTR MaLR -692 888 530 1 1386 269 284 30 40 chr6 105002796 105002895 -44514142 - B3A SINE B2 -1 197 100 2 1386 640 305 0 44 chr6 105003393 105003551 -44513486 + B3 SINE B2 1 151 -65 3 1386 517 164 37 12 chr6 105003557 105003718 -44513319 + (TA)n Simple_repeat Simple_repeat 1 165 0 4 1386 468 0 0 0 chr6 105004157 105004209 -44512828 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1386 2315 305 29 20 chr6 105004384 105005236 -44511801 - Lx8 LINE L1 -235 7238 6379 6 1386 1412 267 40 18 chr6 105005236 105005632 -44511405 + MTD LTR MaLR 1 405 -14 7 1386 456 315 31 0 chr6 105005643 105005773 -44511264 - Lx8 LINE L1 -1088 6385 6252 6 1386 279 54 0 0 chr6 105006129 105006166 -44510871 + (TAA)n Simple_repeat Simple_repeat 1 37 0 8 1386 369 266 194 0 chr6 105006233 105006388 -44510649 + MLT1B LTR MaLR 10 194 -273 9 1386 1043 271 75 35 chr6 105006433 105006569 -44510468 + ORR1D2 LTR MaLR 9 144 -226 1 1386 2764 48 3 0 chr6 105006569 105006900 -44510137 - IAPEY3_LTR LTR ERVK 0 332 1 1 1386 1043 271 75 35 chr6 105006900 105007111 -44509926 + ORR1D2 LTR MaLR 145 370 0 1 1386 255 93 0 0 chr6 105008773 105008816 -44508221 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 1 1386 325 307 80 41 chr6 105009344 105009518 -44507519 + B3A SINE B2 1 190 -26 1 1386 637 301 19 5 chr6 105009556 105009766 -44507271 - B3 SINE B2 -1 215 3 1 1386 238 220 0 0 chr6 105010027 105010077 -44506960 + T-rich Low_complexity Low_complexity 1 50 0 1 1386 544 356 30 0 chr6 105011062 105011264 -44505773 + B3 SINE B2 1 208 -8 1 1386 4034 177 43 1 chr6 105011490 105012265 -44504772 - Lx2B LINE L1 -2 6998 6192 1 1386 4003 164 9 1 chr6 105012265 105013003 -44504034 + L1_Mur2 LINE L1 4514 5257 -620 1 1386 197 59 0 56 chr6 105013090 105013126 -44503911 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 1 1386 225 0 0 0 chr6 105014443 105014468 -44502569 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1386 445 58 29 0 chr6 105015181 105015250 -44501787 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1386 681 277 17 11 chr6 105015737 105015916 -44501121 - B3A SINE B2 -15 183 4 2 1386 999 242 237 22 chr6 105016644 105017053 -44499984 - Lx4B LINE L1 0 7058 6562 2 1386 8107 200 28 11 chr6 105017052 105018896 -44498141 - L1_Mur2 LINE L1 -2415 3462 1589 2 1386 644 292 117 71 chr6 105019208 105019602 -44497435 - MTD LTR MaLR 0 419 8 2 1386 1006 97 0 0 chr6 105019810 105019944 -44497093 + B1_Mus1 SINE Alu 2 135 -13 2 1386 198 0 0 0 chr6 105019944 105019966 -44497071 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 2 1386 471 292 79 0 chr6 105020476 105020654 -44496383 - B3A SINE B2 -6 192 1 2 1386 242 0 0 57 chr6 105020796 105020831 -44496206 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1386 372 322 91 75 chr6 105020831 105021470 -44495567 - L1MD LINE L1 -3179 2967 2320 3 1386 441 268 109 16 chr6 105021488 105021681 -44495356 - B3 SINE B2 -5 211 1 3 1386 225 254 0 0 chr6 105022001 105022060 -44494977 + (CAA)n Simple_repeat Simple_repeat 2 60 0 3 1386 40965 5 1 0 chr6 105022255 105028647 -44488390 - L1Md_A LINE L1 0 6582 213 3 1386 202 211 0 0 chr6 105029774 105029812 -44487225 + GA-rich Low_complexity Low_complexity 2 39 0 3 1386 659 252 37 0 chr6 105029818 105030032 -44487005 + RCHARR1 DNA MER1_type 752 973 -1 3 1386 925 250 52 25 chr6 105030065 105030654 -44486383 + Lx9 LINE L1 6968 7638 -6 3 1386 300 270 76 59 chr6 105031143 105031261 -44485776 - B1F SINE Alu -9 140 21 3 1386 3093 63 15 2 chr6 105031476 105031871 -44485166 + MTB LTR MaLR 1 400 0 3 1386 570 115 0 96 chr6 105032481 105032616 -44484421 - Lx LINE L1 0 6654 6533 3 1386 912 87 0 0 chr6 105033252 105033379 -44483658 + (TTC)n Simple_repeat Simple_repeat 2 128 0 4 1386 556 291 121 5 chr6 105034865 105035055 -44481982 - B3 SINE B2 -4 212 1 4 1386 604 355 84 29 chr6 105036445 105036852 -44480185 + L1M4 LINE L1 313 741 -5801 4 1386 294 73 0 0 chr6 105036852 105036893 -44480144 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1386 604 355 84 29 chr6 105036893 105037250 -44479787 + L1M4 LINE L1 742 1118 -5424 4 1386 2083 110 0 13 chr6 105037276 105037590 -44479447 + L1Md_F2 LINE L1 6265 6574 -8 4 1386 336 48 0 0 chr6 105037750 105037792 -44479245 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1386 300 306 132 16 chr6 105038309 105038498 -44478539 + L1M4 LINE L1 3298 3508 -3136 4 1386 5023 78 19 0 chr6 105038534 105039217 -44477820 + L1_Mus2 LINE L1 5871 6566 0 4 1386 3040 52 0 0 chr6 105039383 105039747 -44477290 - L1Md_F2 LINE L1 -147 5736 5373 4 1386 6209 78 0 14 chr6 105039745 105040583 -44476454 + L1Md_F2 LINE L1 5734 6559 -23 4 1386 721 242 13 58 chr6 105040966 105041190 -44475847 + B3 SINE B2 3 216 0 4 1386 423 300 118 37 chr6 105041194 105041599 -44475438 + L1M4 LINE L1 3543 3980 -2664 4 1386 3600 229 30 5 chr6 105042096 105042890 -44474147 + Lx6 LINE L1 6082 6895 -565 4 1386 293 217 14 28 chr6 105043013 105043084 -44473953 - B4A SINE B4 -221 71 2 5 1386 290 308 21 21 chr6 105043123 105043216 -44473821 - PB1D10 SINE Alu -16 101 9 5 1386 21 36 0 0 chr6 105044576 105044604 -44472433 + AT_rich Low_complexity Low_complexity 1 28 0 5 1386 3911 41 8 4 chr6 105044609 105045098 -44471939 - L1Md_F2 LINE L1 0 6582 6092 5 1386 323 326 164 34 chr6 105046588 105047026 -44470011 - L2 LINE L2 -342 3077 2583 5 1386 204 335 77 39 chr6 105047668 105047876 -44469161 - L2 LINE L2 -1629 1790 1575 5 1386 204 86 57 0 chr6 105048154 105048189 -44468848 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 5 1386 351 327 71 7 chr6 105049754 105049908 -44467129 + MIRc SINE MIR 64 227 -41 5 1386 279 336 55 117 chr6 105049933 105050189 -44466848 + MIR SINE MIR 17 256 -6 5 1386 666 280 130 35 chr6 105050317 105050640 -44466397 - MTD LTR MaLR -38 369 10 5 1386 436 16 33 0 chr6 105050728 105050789 -44466248 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1386 338 336 70 0 chr6 105050857 105050870 -44466167 - ID_B1 SINE B4 -6 218 82 6 1386 369 356 26 0 chr6 105050870 105050985 -44466052 - B1F SINE Alu -31 118 1 6 1386 301 302 92 122 chr6 105051220 105051378 -44465659 - B3A SINE B2 -8 190 40 6 1386 982 111 56 0 chr6 105051378 105051558 -44465479 - Lx2A1 LINE L1 -2 7006 6817 6 1386 301 302 92 122 chr6 105051558 105051595 -44465442 - B3A SINE B2 -159 39 1 6 1386 249 169 0 0 chr6 105051601 105051660 -44465377 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 6 1386 463 337 0 18 chr6 105051696 105051862 -44465175 - RSINE1 SINE B4 0 165 3 6 1386 270 318 89 38 chr6 105053750 105053907 -44463130 - RSINE1 SINE B4 0 165 1 6 1386 22 0 0 0 chr6 105054785 105054807 -44462230 + AT_rich Low_complexity Low_complexity 1 22 0 6 1386 23 33 0 0 chr6 105056033 105056063 -44460974 + AT_rich Low_complexity Low_complexity 1 30 0 6 1386 589 337 11 0 chr6 105056292 105056479 -44460558 - B3 SINE B2 0 216 28 6 1386 219 69 0 0 chr6 105057209 105057238 -44459799 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 7 1386 1246 161 63 0 chr6 105057272 105057495 -44459542 + ORR1A4 LTR MaLR 89 325 -4 7 1386 464 0 18 0 chr6 105057497 105057553 -44459484 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 7 1386 550 296 19 29 chr6 105057604 105057809 -44459228 - B3 SINE B2 -12 204 2 7 1386 2373 39 29 6 chr6 105058142 105058453 -44458584 - L1Md_F3 LINE L1 0 6584 6267 7 1386 529 96 0 0 chr6 105058453 105058526 -44458511 + L1Md_F3 LINE L1 6110 6182 -402 7 1386 429 360 68 18 chr6 105060210 105060490 -44456547 - MER2 DNA MER2_type -11 334 41 7 1386 195 362 0 55 chr6 105060577 105060650 -44456387 + L2a LINE L2 2955 3023 -403 7 1386 212 342 35 18 chr6 105060677 105060790 -44456247 - L2 LINE L2 -957 2462 2348 7 1386 26 0 0 0 chr6 105061116 105061142 -44455895 + AT_rich Low_complexity Low_complexity 1 26 0 7 1386 320 257 27 27 chr6 105061179 105061291 -44455746 + GA-rich Low_complexity Low_complexity 4 115 0 7 1386 767 325 92 36 chr6 105061531 105062175 -44454862 + Lx8 LINE L1 5587 6266 -1207 8 1386 201 74 0 0 chr6 105063764 105063791 -44453246 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1386 264 234 32 11 chr6 105064985 105065080 -44451957 + (TA)n Simple_repeat Simple_repeat 1 97 0 8 1386 437 221 0 0 chr6 105065552 105065638 -44451399 - Lx5 LINE L1 -1090 5960 5875 8 1386 747 276 44 20 chr6 105065733 105065936 -44451101 - B3 SINE B2 -4 212 5 8 1386 226 313 0 42 chr6 105065971 105066091 -44450946 + Looper DNA PiggyBac 610 724 -834 8 1386 402 21 0 0 chr6 105066243 105066290 -44450747 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1386 350 225 21 53 chr6 105066640 105066734 -44450303 + B3 SINE B2 126 216 0 8 1386 1548 54 0 0 chr6 105066814 105067000 -44450037 + B2_Mm1t SINE B2 2 187 -6 8 1386 10965 72 4 0 chr6 105067143 105068612 -44448425 + L1Md_A LINE L1 2678 4152 -1731 8 1386 36733 25 1 9 chr6 105068598 105073609 -44443428 + L1Md_A LINE L1 620 5586 -297 8 1386 8368 34 0 0 chr6 105073609 105074603 -44442434 + L1Md_A LINE L1 5587 6580 -2 9 1386 36733 23 1 1 chr6 105074603 105074615 -44442422 + L1Md_A LINE L1 5587 5596 -287 8 1386 243 152 0 0 chr6 105074727 105074773 -44442264 + CT-rich Low_complexity Low_complexity 1 46 0 9 1386 28359 108 24 13 chr6 105074773 105078466 -44438571 - L1_Mus2 LINE L1 0 6566 2998 9 1386 744 12 0 0 chr6 105078466 105078551 -44438486 + (TTTC)n Simple_repeat Simple_repeat 4 88 0 9 1386 28359 132 37 16 chr6 105078551 105080887 -44436150 - L1_Mus2 LINE L1 -2886 2997 181 9 1386 929 283 54 94 chr6 105080923 105081274 -44435763 - Lx5 LINE L1 -37 7013 6677 9 1386 4039 230 45 41 chr6 105081269 105082429 -44434608 + Lx5 LINE L1 5745 6890 -86 9 1386 616 230 103 6 chr6 105082787 105082962 -44434075 + Lx4A LINE L1 6866 7057 -1 9 1386 180 77 0 0 chr6 105083433 105083459 -44433578 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1386 206 237 0 0 chr6 105083835 105083873 -44433164 + (TATG)n Simple_repeat Simple_repeat 2 39 0 9 1386 866 299 63 22 chr6 105083919 105084189 -44432848 - B4 SINE B4 -6 286 6 9 1386 1769 165 6 58 chr6 105084638 105084985 -44432052 - ORR1A4 LTR MaLR 0 329 1 1 1386 214 352 0 0 chr6 105085079 105085170 -44431867 + CT-rich Low_complexity Low_complexity 1 91 0 1 1386 432 37 0 0 chr6 105086098 105086152 -44430885 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1386 3524 175 57 31 chr6 105087004 105087781 -44429256 + L1_Mur1 LINE L1 30 826 -6158 1 1386 13723 99 8 2 chr6 105087762 105089746 -44427291 + L1_Mur1 LINE L1 3772 5766 -120 1 1386 940 172 0 43 chr6 105089746 105089953 -44427084 + Lx3A LINE L1 6782 6979 -2 1 1386 21 36 0 0 chr6 105089953 105089981 -44427056 + AT_rich Low_complexity Low_complexity 1 28 0 1 1386 189 0 0 0 chr6 105089988 105090009 -44427028 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 1386 22 35 0 0 chr6 105090438 105090467 -44426570 + AT_rich Low_complexity Low_complexity 1 29 0 1 1386 23 33 0 0 chr6 105090631 105090661 -44426376 + AT_rich Low_complexity Low_complexity 1 30 0 1 1386 428 307 29 0 chr6 105090673 105090810 -44426227 - B1F SINE Alu -8 141 1 1 1386 321 26 0 0 chr6 105091180 105091218 -44425819 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1386 1330 93 16 0 chr6 105091317 105091499 -44425538 - B2_Mm2 SINE B2 -7 188 4 1 1386 315 0 0 0 chr6 105093315 105093350 -44423687 + (TCC)n Simple_repeat Simple_repeat 3 37 0 1 1386 207 0 0 0 chr6 105093581 105093604 -44423433 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1386 229 386 41 7 chr6 105093605 105093751 -44423286 + MLT1C LTR MaLR 317 467 0 1 1386 187 242 87 101 chr6 105094157 105094226 -44422811 + L4 LINE RTE 824 891 -1138 1 1386 6580 135 51 10 chr6 105094912 105096054 -44420983 - Lx2 LINE L1 0 6997 5809 1 1386 180 125 0 0 chr6 105096950 105096982 -44420055 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 1 1386 24 0 0 0 chr6 105098000 105098024 -44419013 + AT_rich Low_complexity Low_complexity 1 24 0 1 1386 1124 89 0 0 chr6 105098055 105098201 -44418836 - B1_Mm SINE Alu -1 146 1 1 1386 779 296 24 5 chr6 105099227 105099434 -44417603 + B3 SINE B2 6 216 0 1 1386 233 339 37 0 chr6 105099452 105099556 -44417481 + MIR SINE MIR 57 171 -105 1 1386 954 48 0 0 chr6 105099567 105099691 -44417346 - L1_Mus1 LINE L1 -503 6064 5941 1 1386 306 188 0 0 chr6 105099694 105099745 -44417292 + T-rich Low_complexity Low_complexity 19 69 0 1 1386 1640 36 0 0 chr6 105099745 105099937 -44417100 - B2_Mm1a SINE B2 -1 192 1 1 1386 306 188 0 0 chr6 105099937 105099954 -44417083 + T-rich Low_complexity Low_complexity 2 18 0 1 1386 2405 31 10 13 chr6 105099970 105100268 -44416769 - L1Md_F3 LINE L1 -15 6569 6273 1 1386 2756 72 0 0 chr6 105100268 105100663 -44416374 - L1_Mus1 LINE L1 -631 5936 5542 1 1386 3849 88 15 8 chr6 105100664 105101193 -44415844 + L1_Mus1 LINE L1 6033 6565 -2 1 1386 393 22 0 0 chr6 105101333 105101379 -44415658 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 1 1386 500 100 0 12 chr6 105103098 105103179 -44413858 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 1386 270 0 0 0 chr6 105103179 105103209 -44413828 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1386 1021 267 10 36 chr6 105103340 105103643 -44413394 + Lx6 LINE L1 7166 7460 0 1 1386 829 308 9 5 chr6 105103679 105103891 -44413146 + ID_B1 SINE B4 4 216 -8 1 1386 414 0 0 0 chr6 105104499 105104545 -44412492 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1386 336 312 125 38 chr6 105104745 105104985 -44412052 + MLT-int LTR MaLR 65 325 -1410 1 1386 396 314 60 43 chr6 105106596 105107012 -44410025 + L1M5 LINE L1 4369 4791 -1355 1 1386 216 0 0 0 chr6 105107139 105107163 -44409874 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1386 329 351 79 7 chr6 105107219 105107371 -44409666 + RSINE1 SINE B4 3 165 0 1 1386 324 0 0 0 chr6 105107399 105107435 -44409602 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1386 1437 166 67 0 chr6 105107686 105107969 -44409068 - Lx2 LINE L1 0 6997 6696 1 1386 300 342 108 5 chr6 105108024 105108227 -44408810 + MER2 DNA MER2_type 25 248 -97 1 1386 4250 129 31 7 chr6 105108373 105109045 -44407992 - Lx2 LINE L1 -1 6996 6309 1 1386 1665 155 19 9 chr6 105109048 105109367 -44407670 + Lx2 LINE L1 5975 6296 -701 1 1386 23 0 0 0 chr6 105109757 105109780 -44407257 + AT_rich Low_complexity Low_complexity 1 23 0 1 1386 246 189 176 0 chr6 105109912 105109986 -44407051 - Lx7 LINE L1 -1451 6245 6159 1 1386 1514 259 118 7 chr6 105109991 105110422 -44406615 + Lx7 LINE L1 6235 6713 -983 1 1386 615 304 79 14 chr6 105110466 105110743 -44406294 + Lx7 LINE L1 7026 7320 -376 1 1386 24 0 0 0 chr6 105110990 105111014 -44406023 + AT_rich Low_complexity Low_complexity 1 24 0 1 1386 876 126 0 0 chr6 105111325 105111499 -44405538 + (GA)n Simple_repeat Simple_repeat 1 174 0 1 1386 718 125 5 43 chr6 105111536 105111720 -44405317 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 1 1386 375 41 0 0 chr6 105112234 105112283 -44404754 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1386 1056 108 0 0 chr6 105113834 105113991 -44403046 + (TTTC)n Simple_repeat Simple_repeat 3 159 0 1 1386 241 307 46 73 chr6 105113994 105114018 -44403019 - PB1D10 SINE Alu -11 106 1 1 1386 326 310 12 12 chr6 105114018 105114103 -44402934 - ID_B1 SINE B4 -58 166 82 1 1386 390 297 22 0 chr6 105114627 105114765 -44402272 + (CA)n Simple_repeat Simple_repeat 2 142 0 1 1386 276 317 40 40 chr6 105114765 105114913 -44402124 + MER88 LTR ERVL 315 462 -2 1 1386 364 252 48 16 chr6 105115604 105115729 -44401308 - Lx7 LINE L1 0 7696 7568 1 1386 396 299 63 32 chr6 105116003 105116193 -44400844 - B3A SINE B2 0 198 3 1 1386 24 0 0 0 chr6 105116287 105116311 -44400726 + AT_rich Low_complexity Low_complexity 1 24 0 1 1386 2392 132 50 29 chr6 105116375 105116819 -44400218 - Lx2 LINE L1 -2 6995 6543 1 1386 321 78 0 0 chr6 105116826 105116840 -44400197 + (T)n Simple_repeat Simple_repeat 1 14 0 1 1386 1194 61 0 0 chr6 105116840 105116988 -44400049 - B1_Mus1 SINE Alu 0 148 1 1 1386 321 78 0 0 chr6 105116988 105117024 -44400013 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1386 7177 70 5 8 chr6 105117522 105118477 -44398560 + L1_Mus1 LINE L1 5614 6565 -2 1 1386 192 385 41 62 chr6 105118766 105118863 -44398174 - MIRb SINE MIR -166 102 8 1 1386 24 0 0 0 chr6 105119391 105119415 -44397622 + AT_rich Low_complexity Low_complexity 1 24 0 1 173 4979 123 30 6 chr6 105119566 105120362 -44396675 + Lx2 LINE L1 5654 6468 -529 1 1387 180 152 0 0 chr6 105120439 105120472 -44396565 + T-rich Low_complexity Low_complexity 2 34 0 1 1387 1024 95 0 26 chr6 105120474 105120625 -44396412 - B1_Mus2 SINE Alu 0 147 1 1 1387 1785 136 0 0 chr6 105121220 105121507 -44395530 - L1_Mur2 LINE L1 -1946 3931 3645 1 1387 1616 59 0 68 chr6 105121505 105121741 -44395296 - L1_Mus3 LINE L1 -407 6231 6012 1 1387 308 230 96 17 chr6 105121737 105121852 -44395185 - Lx9 LINE L1 -295 7349 7226 1 1387 1081 244 58 13 chr6 105121846 105122154 -44394883 + Lx9 LINE L1 6892 7213 -431 1 1387 844 168 0 47 chr6 105122179 105122372 -44394665 + Lx3B LINE L1 6787 6970 -3 1 1387 25 75 0 0 chr6 105122373 105122426 -44394611 + AT_rich Low_complexity Low_complexity 1 53 0 1 1387 1070 135 34 0 chr6 105122426 105122604 -44394433 + B2_Mm2 SINE B2 2 185 -10 1 1387 207 170 0 0 chr6 105122627 105122674 -44394363 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1387 505 403 62 15 chr6 105124461 105124786 -44392251 - LTR16A LTR ERVL -83 368 29 1 1387 282 29 0 0 chr6 105125447 105125482 -44391555 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 1387 267 292 44 11 chr6 105125687 105125777 -44391260 + B1F1 SINE Alu 49 141 -8 1 1387 1070 106 0 0 chr6 105126788 105126929 -44390108 - B1_Mus2 SINE Alu -5 142 2 1 1387 376 348 78 19 chr6 105127933 105128252 -44388785 - L1ME2 LINE L1 -249 5915 5578 1 1387 520 304 91 35 chr6 105128264 105128652 -44388385 - L1MA5 LINE L1 -7 6293 5889 1 1387 325 306 57 79 chr6 105128689 105128916 -44388121 - L1ME2 LINE L1 -575 5589 5368 1 1387 263 365 30 60 chr6 105129186 105129352 -44387685 - Tigger5 DNA MER2_type -2194 212 52 1 1387 506 367 55 25 chr6 105129642 105129916 -44387121 - B4A SINE B4 -4 288 7 1 1387 1716 239 114 4 chr6 105129979 105130525 -44386512 - Lx9 LINE L1 -33 7611 7006 1 1387 6081 44 1 0 chr6 105130536 105131284 -44385753 - L1Md_F3 LINE L1 -14 6570 5822 1 1387 3785 34 0 0 chr6 105131284 105131727 -44385310 + L1Md_F3 LINE L1 5368 5810 -73 1 1387 1590 256 40 10 chr6 105131728 105132130 -44384907 - Lx9 LINE L1 -630 7014 6601 1 1387 235 219 62 0 chr6 105132323 105132387 -44384650 - L1MC LINE L1 -1379 4767 4700 1 1387 466 298 134 40 chr6 105132438 105132833 -44384204 - L1ME2 LINE L1 -1498 4648 4217 1 1387 410 264 85 31 chr6 105132954 105133083 -44383954 - Lx8 LINE L1 -230 7243 7108 1 1387 742 128 13 39 chr6 105134246 105134401 -44382636 - L1_Mus3 LINE L1 0 6638 6488 1 1387 419 323 99 7 chr6 105136185 105136373 -44380664 - B3A SINE B2 -15 201 3 1 1387 505 286 23 141 chr6 105137286 105137506 -44379531 + B3A SINE B2 2 204 -12 1 1387 22 35 0 0 chr6 105137595 105137624 -44379413 + AT_rich Low_complexity Low_complexity 1 29 0 1 1387 266 273 28 92 chr6 105137952 105137992 -44379045 - Tigger7 DNA MER2_type -226 2265 2233 1 1387 516 14 41 0 chr6 105137992 105138065 -44378972 + (CATA)n Simple_repeat Simple_repeat 3 78 0 1 1387 266 273 28 92 chr6 105138065 105138165 -44378872 - Tigger7 DNA MER2_type -259 2232 2135 1 1387 200 143 0 28 chr6 105138666 105138702 -44378335 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 1 1387 603 0 0 0 chr6 105138821 105138888 -44378149 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1387 1149 265 140 38 chr6 105139048 105139744 -44377293 - Lx9 LINE L1 -1702 5942 5141 1 1387 349 265 136 34 chr6 105139721 105139897 -44377140 + L1_Rod LINE L1 4506 4699 -1148 1 1387 339 223 38 28 chr6 105139931 105140037 -44377000 + L1_Rod LINE L1 5031 5137 -710 1 1387 273 242 21 21 chr6 105140298 105140395 -44376642 + Lx6 LINE L1 7359 7455 -5 1 1387 401 294 97 88 chr6 105142411 105142627 -44374410 + ID_B1 SINE B4 4 221 -3 1 1387 288 286 91 16 chr6 105143455 105143576 -44373461 - MIRb SINE MIR -1 267 138 1 1387 494 346 25 6 chr6 105143787 105143944 -44373093 - RSINE1 SINE B4 -5 160 1 1 1387 40191 18 2 0 chr6 105144561 105150923 -44366114 - L1Md_A LINE L1 0 6582 208 1 1387 385 307 7 54 chr6 105151059 105151207 -44365830 - MIR SINE MIR -114 148 8 1 1387 5128 231 40 28 chr6 105151284 105152561 -44364476 - Lx5 LINE L1 -95 6955 5664 1 1387 880 129 37 6 chr6 105155122 105155286 -44361751 + Lx LINE L1 6482 6650 -4 2 1387 973 74 20 13 chr6 105155898 105156048 -44360989 + L1Md_F2 LINE L1 6432 6582 0 2 1387 374 289 68 19 chr6 105156150 105156415 -44360622 - Lx9 LINE L1 -2 7642 7365 2 1387 405 311 19 38 chr6 105156433 105156590 -44360447 - Lx9 LINE L1 -405 7239 7086 2 1387 729 368 78 19 chr6 105156591 105157004 -44360033 - MER21B LTR ERV1 -198 665 229 2 1387 344 358 107 13 chr6 105157018 105157168 -44359869 - MER21B LTR ERV1 -679 184 21 2 1387 26 30 0 0 chr6 105157508 105157541 -44359496 + AT_rich Low_complexity Low_complexity 1 33 0 2 1387 2194 207 59 2 chr6 105158849 105159343 -44357694 - Lx2B LINE L1 -724 6276 5755 2 1387 254 182 0 83 chr6 105159335 105159407 -44357630 + Lx2 LINE L1 6930 6995 -2 2 1387 259 321 74 0 chr6 105159506 105159668 -44357369 - L1MB3 LINE L1 -3 6180 6007 2 1387 1610 187 84 14 chr6 105159752 105160099 -44356938 - Lx LINE L1 -1 6653 6283 2 1387 499 294 60 12 chr6 105160132 105160383 -44356654 - L1MB3 LINE L1 -310 5873 5611 2 1387 4456 100 3 6 chr6 105160433 105161078 -44355959 - L1Md_F2 LINE L1 -2 6580 5938 2 1387 20315 91 10 2 chr6 105161084 105163248 -44353789 - L1Md_F LINE L1 -1716 4167 1978 2 1387 261 57 0 0 chr6 105163248 105163283 -44353754 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1387 20315 92 9 2 chr6 105163283 105164129 -44352908 - L1Md_F LINE L1 -3906 1977 1132 2 1387 6915 95 10 1 chr6 105164122 105165141 -44351896 - L1Md_F2 LINE L1 -2 6580 5550 2 1387 7542 90 4 9 chr6 105165138 105166110 -44350927 + L1Md_F2 LINE L1 4472 5440 -443 2 1387 7705 65 0 5 chr6 105166110 105167092 -44349945 + L1Md_F2 LINE L1 5589 6565 -17 2 1387 1420 82 14 33 chr6 105167092 105167194 -44349843 + L1_Mm LINE L1 5441 5540 -343 2 1387 3980 132 83 1 chr6 105167191 105167852 -44349185 - L1Md_F LINE L1 -5493 1123 409 2 1387 309 89 0 0 chr6 105167875 105167920 -44349117 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1387 212 208 0 40 chr6 105167941 105167991 -44349046 + CT-rich Low_complexity Low_complexity 2 49 0 2 1387 561 88 0 0 chr6 105167995 105168075 -44348962 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 1387 258 56 0 0 chr6 105168590 105168626 -44348411 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1387 4644 242 27 24 chr6 105168630 105169790 -44347247 - Lx9 LINE L1 -170 7474 6312 2 1387 1212 70 151 5 chr6 105169999 105170185 -44346852 + L1_Mus1 LINE L1 6355 6567 0 2 1387 23 0 0 0 chr6 105170185 105170208 -44346829 + AT_rich Low_complexity Low_complexity 1 23 0 2 1387 209 231 38 25 chr6 105170396 105170476 -44346561 + GA-rich Low_complexity Low_complexity 4 84 0 2 1387 252 277 109 69 chr6 105170839 105170940 -44346097 + MLT1E1A LTR MaLR 510 614 -66 2 1387 8427 33 0 0 chr6 105170946 105172344 -44344693 - L1Md_T LINE L1 -2 6580 5183 2 1387 846 66 0 0 chr6 105172816 105172938 -44344099 + (TTTC)n Simple_repeat Simple_repeat 2 123 0 2 1387 378 0 0 0 chr6 105173421 105173463 -44343574 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1387 26 50 0 0 chr6 105173692 105173732 -44343305 + AT_rich Low_complexity Low_complexity 1 40 0 2 1387 369 301 26 0 chr6 105173821 105173934 -44343103 - Lx6 LINE L1 -150 7310 7195 2 1387 546 67 0 0 chr6 105175423 105175498 -44341539 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1387 249 227 0 15 chr6 105175499 105175566 -44341471 + GA-rich Low_complexity Low_complexity 1 66 0 2 1387 524 233 10 120 chr6 105175571 105175781 -44341256 - L1MA4 LINE L1 -330 5973 5783 2 1387 286 258 73 59 chr6 105175826 105175962 -44341075 - L1MA4 LINE L1 -378 5778 5641 2 1387 460 104 0 0 chr6 105175989 105176056 -44340981 + B1_Mus2 SINE Alu 81 147 0 2 1387 471 304 12 30 chr6 105176093 105176259 -44340778 - RSINE1 SINE B4 0 165 3 2 1387 514 263 15 55 chr6 105176304 105176505 -44340532 - L1MA4 LINE L1 -692 5608 5416 2 1387 291 269 89 26 chr6 105176660 105176851 -44340186 - L1MA4 LINE L1 -921 5222 5020 2 1387 447 335 112 27 chr6 105176891 105177375 -44339662 + Lx9 LINE L1 7093 7617 -27 2 1387 377 279 100 68 chr6 105177397 105177647 -44339390 - L1MA4 LINE L1 -1120 5023 4766 2 1387 594 0 0 0 chr6 105178439 105178505 -44338532 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1387 975 95 0 0 chr6 105178506 105178643 -44338394 - B1_Mus1 SINE Alu -6 142 6 2 1387 542 203 8 0 chr6 105178717 105178845 -44338192 + (CA)n Simple_repeat Simple_repeat 2 130 0 2 1387 373 194 107 48 chr6 105178851 105178954 -44338083 + HAL1-3A_ME LINE L1 1975 2083 -775 2 1387 255 339 36 0 chr6 105179051 105179163 -44337874 + PB1D10 SINE Alu 1 116 -1 2 1387 407 243 149 0 chr6 105179446 105179553 -44337484 + MTD LTR MaLR 12 134 -285 2 1387 1270 184 69 1 chr6 105179554 105179822 -44337215 - RLTR12A LTR ERVK -2 566 264 2 1387 486 0 0 0 chr6 105179822 105179876 -44337161 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1387 567 250 119 44 chr6 105179876 105179904 -44337133 - RLTR12A LTR ERVK -265 263 240 2 1387 237 211 0 0 chr6 105179919 105179976 -44337061 + CT-rich Low_complexity Low_complexity 1 57 0 2 1387 1352 183 81 65 chr6 105179987 105180296 -44336741 - RLTR12A LTR ERVK -254 314 1 2 1387 737 262 87 10 chr6 105180333 105180541 -44336496 + MTD LTR MaLR 196 419 0 2 1387 301 309 53 35 chr6 105180830 105180944 -44336093 + Lx8 LINE L1 7122 7237 -236 2 1387 4857 31 0 0 chr6 105180969 105181543 -44335494 - L1Md_A LINE L1 0 6582 6009 2 1387 2362 228 115 16 chr6 105181543 105181642 -44335395 - RMER1A Other Other -31 999 870 2 1387 462 49 0 0 chr6 105181642 105181703 -44335334 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1387 2362 265 96 20 chr6 105181703 105182602 -44334435 - RMER1A Other Other -161 869 54 2 1387 561 15 0 0 chr6 105182737 105182803 -44334234 + (CAAAT)n Simple_repeat Simple_repeat 2 67 0 2 1387 586 322 45 0 chr6 105182915 105183117 -44333920 + B3 SINE B2 6 216 0 2 1387 227 228 0 67 chr6 105183706 105183850 -44333187 + T-rich Low_complexity Low_complexity 1 134 0 2 1387 636 341 9 19 chr6 105183853 105184068 -44332969 - ID_B1 SINE B4 -8 216 4 2 1387 3631 83 16 0 chr6 105184224 105184728 -44332309 - L1Md_F2 LINE L1 -2 6580 6069 2 1387 2483 75 16 18 chr6 105184728 105185109 -44331928 - BGLII LTR ERVK -38 383 4 2 1387 24 0 0 0 chr6 105185715 105185739 -44331298 + AT_rich Low_complexity Low_complexity 1 24 0 2 1387 75 31 0 0 chr6 105185997 105186093 -44330944 + AT_rich Low_complexity Low_complexity 1 96 0 2 1387 282 193 0 0 chr6 105186414 105186471 -44330566 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1387 677 191 6 22 chr6 105186477 105186659 -44330378 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 2 1387 365 316 35 12 chr6 105187353 105187523 -44329514 - L1MA4 LINE L1 -411 5889 5716 2 1387 473 0 18 0 chr6 105188473 105188530 -44328507 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 2 1387 2830 294 78 18 chr6 105190639 105191240 -44325797 - Lx9 LINE L1 -48 7596 6940 2 1387 1561 146 53 7 chr6 105191240 105191522 -44325515 - Lx2 LINE L1 -1 6996 6702 2 1387 2830 294 78 18 chr6 105191522 105191991 -44325046 - Lx9 LINE L1 -705 6939 6461 2 1387 22 35 0 0 chr6 105192269 105192298 -44324739 + AT_rich Low_complexity Low_complexity 1 29 0 2 1387 2992 89 64 45 chr6 105192639 105192716 -44324321 - L1_Mus3 LINE L1 -6 6632 6564 2 1387 1036 66 0 35 chr6 105192716 105192857 -44324180 + B1_Mus2 SINE Alu 1 136 -11 2 1387 306 0 0 0 chr6 105192857 105192891 -44324146 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 1387 2992 89 64 45 chr6 105192891 105193295 -44323742 - L1_Mus3 LINE L1 -75 6563 6142 2 1387 3200 92 7 0 chr6 105193295 105193742 -44323295 + L1_Mus3 LINE L1 5683 6132 -506 2 1387 1090 187 9 19 chr6 105193969 105194182 -44322855 + MTC LTR MaLR 8 218 -203 2 1387 434 240 23 55 chr6 105194195 105194323 -44322714 + MTC LTR MaLR 294 417 -4 2 1387 1225 275 48 30 chr6 105194327 105194725 -44322312 + MTC-int LTR MaLR 1 405 -853 2 1387 551 265 7 7 chr6 105195002 105195139 -44321898 + MER3 DNA MER1_type 19 155 -54 2 1387 373 279 9 26 chr6 105196477 105196591 -44320446 + (TG)n Simple_repeat Simple_repeat 1 112 0 2 1387 331 300 22 118 chr6 105196591 105196912 -44320125 - B4A SINE B4 0 292 3 2 1387 311 389 41 63 chr6 105197799 105198161 -44318876 + ORR1E LTR MaLR 2 355 -4 2 1387 423 107 0 0 chr6 105198185 105198260 -44318777 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 1387 198 0 0 0 chr6 105198260 105198282 -44318755 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1387 610 300 53 28 chr6 105198297 105198477 -44318560 - L1MB1 LINE L1 -264 5925 5745 2 1387 1857 167 6 9 chr6 105198477 105198804 -44318233 + ORR1A3 LTR MaLR 1 326 0 2 1387 610 300 53 28 chr6 105198804 105198958 -44318079 - L1MB1 LINE L1 -445 5744 5582 2 1387 426 121 48 39 chr6 105198958 105199061 -44317976 - L1Md_F2 LINE L1 -3 6579 6476 2 1387 610 300 53 28 chr6 105199061 105199119 -44317918 - L1MB1 LINE L1 -608 5581 5524 2 1387 290 204 62 36 chr6 105201491 105201603 -44315434 - Lx9 LINE L1 -9 7635 7521 2 1387 950 246 40 53 chr6 105201784 105202106 -44314931 - Lx5 LINE L1 -831 6219 5902 2 1387 586 318 23 0 chr6 105202408 105202584 -44314453 - Tigger5 DNA MER2_type -2184 222 43 2 1387 512 266 0 0 chr6 105202747 105202871 -44314166 + Lx5 LINE L1 6924 7047 -3 2 1387 3742 32 5 0 chr6 105203490 105203924 -44313113 - RLTR10C LTR ERVK 0 436 1 2 1387 8143 32 0 0 chr6 105203924 105204860 -44312177 - MMERVK10C-int LTR ERVK 0 7581 6646 2 1387 4168 47 4 0 chr6 105204846 105205353 -44311684 - MMERVK10C-int LTR ERVK -1771 5810 5302 2 1387 17418 43 0 1 chr6 105205327 105207404 -44309633 - MMERVK10C-int LTR ERVK -4638 2943 870 2 1387 2606 95 53 3 chr6 105207402 105207782 -44309255 - MMERVK10C-int LTR ERVK -7182 399 1 2 1387 3778 28 5 0 chr6 105207782 105208216 -44308821 - RLTR10C LTR ERVK 0 436 1 2 1387 354 238 12 0 chr6 105208225 105208305 -44308732 - MER58A DNA MER1_type -113 111 31 2 1387 189 345 58 0 chr6 105208568 105208655 -44308382 + MIRc SINE MIR 80 171 -97 2 1387 765 290 165 18 chr6 105208665 105208999 -44308038 - MTD LTR MaLR -36 383 1 2 1387 32 26 0 0 chr6 105209220 105209259 -44307778 + AT_rich Low_complexity Low_complexity 1 39 0 2 1387 26 50 0 0 chr6 105209849 105209889 -44307148 + AT_rich Low_complexity Low_complexity 1 40 0 2 1387 290 350 56 37 chr6 105211040 105211363 -44305674 + L1ME5 LINE L1 5564 5892 -302 2 1387 10147 131 15 12 chr6 105211936 105213626 -44303411 + L1_Mur1 LINE L1 4093 5787 -99 2 1387 4760 126 95 4 chr6 105213631 105214418 -44302619 + Lx3C LINE L1 6109 6967 -9 2 1387 247 127 32 0 chr6 105216171 105216234 -44300803 + A-rich Low_complexity Low_complexity 2 66 0 2 1387 251 206 33 0 chr6 105216255 105216347 -44300690 + (TTAGGG)n Simple_repeat Simple_repeat 3 97 0 2 1387 22 0 0 0 chr6 105216635 105216657 -44300380 + AT_rich Low_complexity Low_complexity 1 22 0 2 1387 34101 72 6 2 chr6 105216658 105222911 -44294126 - L1Md_F2 LINE L1 -1 6581 304 2 1387 688 299 24 0 chr6 105222933 105223140 -44293897 - B3 SINE B2 -2 214 3 2 1387 532 308 83 76 chr6 105223561 105223969 -44293068 - MLT1C LTR MaLR -25 442 32 2 1387 571 363 38 52 chr6 105224076 105224422 -44292615 - MLT1C-int LTR MaLR -107 1264 924 2 1387 189 107 0 0 chr6 105224422 105224450 -44292587 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1387 1485 251 14 23 chr6 105224582 105224928 -44292109 - MTD LTR MaLR -76 343 1 2 1387 914 282 105 20 chr6 105225285 105225589 -44291448 - MTE2b LTR MaLR 0 379 50 2 1387 252 193 22 43 chr6 105225616 105225708 -44291329 + (TTATA)n Simple_repeat Simple_repeat 3 92 0 2 1387 963 170 12 0 chr6 105225985 105226156 -44290881 - B2_Mm2 SINE B2 -18 177 5 2 1387 298 0 0 45 chr6 105226250 105226294 -44290743 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3 1387 22 0 0 0 chr6 105226771 105226793 -44290244 + AT_rich Low_complexity Low_complexity 1 22 0 3 1387 566 352 63 25 chr6 105227580 105227819 -44289218 - B4A SINE B4 -12 280 33 3 1387 5238 192 76 4 chr6 105228457 105229556 -44287481 + Lx3C LINE L1 5796 6974 -2 3 1387 218 361 0 0 chr6 105230964 105231036 -44286001 + MIR3 SINE MIR 100 171 -37 3 1387 23 0 0 0 chr6 105231414 105231437 -44285600 + AT_rich Low_complexity Low_complexity 1 23 0 3 1387 22 35 0 0 chr6 105231789 105231818 -44285219 + AT_rich Low_complexity Low_complexity 1 29 0 3 1387 556 265 173 36 chr6 105232222 105232247 -44284790 - Lx9 LINE L1 -2 7642 7615 3 1387 216 0 0 0 chr6 105232247 105232271 -44284766 + (TATAA)n Simple_repeat Simple_repeat 2 25 0 3 1387 556 265 173 36 chr6 105232271 105232574 -44284463 - Lx9 LINE L1 -30 7614 7270 3 1387 182 62 31 0 chr6 105233117 105233149 -44283888 + (TTATA)n Simple_repeat Simple_repeat 5 37 0 3 1387 560 14 0 14 chr6 105233593 105233663 -44283374 + (TTTTC)n Simple_repeat Simple_repeat 1 69 0 3 1387 415 317 146 31 chr6 105236810 105237002 -44280035 + ID_B1 SINE B4 1 214 -10 3 1387 207 0 0 0 chr6 105237002 105237025 -44280012 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1387 288 120 0 0 chr6 105237039 105237089 -44279948 + (A)n Simple_repeat Simple_repeat 1 50 0 3 1387 7557 105 1 8 chr6 105237849 105239174 -44277863 - L1_Mus4 LINE L1 0 6636 5321 3 1387 593 338 62 78 chr6 105239368 105239869 -44277168 - MLT1D LTR MaLR 0 505 13 3 1387 387 309 92 32 chr6 105241271 105241488 -44275549 - L1M2 LINE L1 -3619 2524 2295 3 1387 353 331 8 16 chr6 105241631 105241754 -44275283 - B4A SINE B4 -165 127 6 3 1387 23 0 0 0 chr6 105241978 105242001 -44275036 + AT_rich Low_complexity Low_complexity 1 23 0 3 1387 798 278 85 29 chr6 105242690 105242971 -44274066 + MTD LTR MaLR 1 297 -122 3 1387 260 83 0 20 chr6 105243727 105243776 -44273261 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 3 1387 311 372 53 93 chr6 105244731 105245163 -44271874 + MLT2B1 LTR ERVL 2 416 -104 3 1387 335 287 23 169 chr6 105245363 105245493 -44271544 + RSINE1 SINE B4 55 165 0 3 1387 231 36 0 0 chr6 105245501 105245529 -44271508 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 3 1387 415 285 70 32 chr6 105245700 105245885 -44271152 + L1MC1 LINE L1 1987 2178 -4330 3 1387 23 0 0 0 chr6 105246235 105246258 -44270779 + AT_rich Low_complexity Low_complexity 1 23 0 3 1387 22 0 0 0 chr6 105246468 105246490 -44270547 + AT_rich Low_complexity Low_complexity 1 22 0 3 1387 202 99 34 80 chr6 105246559 105246647 -44270390 + T-rich Low_complexity Low_complexity 2 85 0 3 1387 404 299 44 7 chr6 105246658 105246793 -44270244 - B1F SINE Alu -9 140 1 3 1387 1121 260 46 14 chr6 105246902 105247183 -44269854 - ORR1C2 LTR MaLR 0 384 95 3 1387 7740 146 27 14 chr6 105247200 105248492 -44268545 - Lx4A LINE L1 0 7058 5750 3 1387 503 158 3 0 chr6 105248492 105248583 -44268454 - ORR1C2 LTR MaLR -281 97 5 3 1387 433 335 29 23 chr6 105249047 105249356 -44267681 + L1MC1 LINE L1 3801 4111 -2210 3 1387 772 271 20 5 chr6 105249359 105249559 -44267478 + B3 SINE B2 1 203 -13 3 1387 34 24 0 0 chr6 105249559 105249600 -44267437 + AT_rich Low_complexity Low_complexity 1 41 0 3 1387 707 203 0 15 chr6 105249605 105249740 -44267297 + B1_Mur3 SINE Alu 2 134 -15 3 1387 207 0 0 0 chr6 105249744 105249767 -44267270 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1387 402 74 0 0 chr6 105250049 105250103 -44266934 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1387 428 337 149 53 chr6 105250176 105250815 -44266222 + L1MC1 LINE L1 5791 6490 -18 3 1388 619 267 51 41 chr6 105250864 105251059 -44265978 + B3 SINE B2 5 201 -15 3 1388 26 30 0 0 chr6 105251379 105251412 -44265625 + AT_rich Low_complexity Low_complexity 1 33 0 3 1388 455 305 133 5 chr6 105252805 105252993 -44264044 + B3 SINE B2 5 216 0 3 1388 266 0 29 0 chr6 105253264 105253298 -44263739 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1388 525 268 7 72 chr6 105255725 105255878 -44261159 - Lx9 LINE L1 -494 7150 7008 3 1388 1542 54 0 0 chr6 105255894 105256080 -44260957 + L1Md_F3 LINE L1 5401 5586 -297 3 1388 8360 25 1 25 chr6 105256080 105257099 -44259938 + L1Md_F3 LINE L1 5587 6581 -3 3 1388 315 257 0 0 chr6 105257099 105257173 -44259864 - Lx9 LINE L1 -643 7001 6928 3 1388 1127 266 47 41 chr6 105257186 105257551 -44259486 + Lx6 LINE L1 7078 7444 -16 3 1388 629 327 141 25 chr6 105257545 105257950 -44259087 - Lx9 LINE L1 -706 6938 6487 3 1388 189 0 0 0 chr6 105258041 105258062 -44258975 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1388 260 189 0 13 chr6 105258406 105258481 -44258556 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1388 726 75 0 0 chr6 105258494 105258600 -44258437 + (GA)n Simple_repeat Simple_repeat 2 107 0 3 1388 578 210 101 0 chr6 105258915 105259053 -44257984 + RMER10B LTR ERVL 199 350 -48 3 1388 12820 158 12 8 chr6 105259346 105262275 -44254762 - Lx2 LINE L1 -537 6460 3521 3 1388 1233 109 10 8 chr6 105262275 105262484 -44254553 - MTB-int LTR MaLR -1149 221 1 3 1388 3213 48 10 0 chr6 105262484 105262880 -44254157 - MTB LTR MaLR 0 400 1 3 1388 276 371 101 56 chr6 105262960 105263228 -44253809 + B4A SINE B4 5 284 -8 3 1388 37592 46 0 6 chr6 105264529 105271009 -44246028 - L1Md_T LINE L1 0 6585 44 3 1388 7627 62 17 5 chr6 105271240 105272263 -44244774 - L1Md_F2 LINE L1 0 6582 5548 3 1388 22 35 0 0 chr6 105272536 105272565 -44244472 + AT_rich Low_complexity Low_complexity 1 29 0 3 1388 22 35 0 0 chr6 105272721 105272750 -44244287 + AT_rich Low_complexity Low_complexity 1 29 0 3 1388 225 0 0 0 chr6 105272806 105272831 -44244206 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1388 2238 53 7 10 chr6 105274260 105274562 -44242475 + L1_Mus1 LINE L1 6267 6567 0 3 1388 727 348 28 0 chr6 105275171 105275453 -44241584 + B4A SINE B4 1 290 -2 3 1388 180 77 0 0 chr6 105276007 105276033 -44241004 + (TGG)n Simple_repeat Simple_repeat 3 28 0 3 1388 407 315 102 107 chr6 105276095 105276468 -44240569 - MLT1B LTR MaLR -6 384 14 3 1388 378 291 17 83 chr6 105276542 105276722 -44240315 + Charlie12 DNA MER1_type 8 175 -2698 3 1388 23 0 0 0 chr6 105276741 105276764 -44240273 + AT_rich Low_complexity Low_complexity 1 23 0 3 1388 375 304 180 6 chr6 105277202 105277374 -44239663 + Charlie12 DNA MER1_type 2671 2872 -1 3 1388 25 0 0 0 chr6 105277884 105277909 -44239128 + AT_rich Low_complexity Low_complexity 1 25 0 3 1388 335 363 82 26 chr6 105278025 105278294 -44238743 - L1MB5 LINE L1 -86 6088 5805 3 1388 260 197 0 0 chr6 105278458 105278519 -44238518 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1388 271 370 22 0 chr6 105278686 105278824 -44238213 - L1MB5 LINE L1 -503 5671 5531 3 1388 228 235 49 12 chr6 105278931 105279013 -44238024 - L1MD LINE L1 -927 5219 5135 3 1388 282 258 15 0 chr6 105279086 105279152 -44237885 - ID2 SINE ID -5 78 12 3 1388 28 29 0 0 chr6 105279527 105279562 -44237475 + AT_rich Low_complexity Low_complexity 1 35 0 3 1388 418 299 39 84 chr6 105280441 105280620 -44236417 + MLT1E1A LTR MaLR 1 171 -509 3 1388 790 301 63 39 chr6 105280972 105281353 -44235684 + MLT1B LTR MaLR 1 390 0 3 1388 384 310 206 65 chr6 105282950 105283260 -44233777 + MLT1A LTR MaLR 4 357 -17 3 1388 408 67 0 0 chr6 105283603 105283663 -44233374 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1388 516 140 0 0 chr6 105283683 105283790 -44233247 + (T)n Simple_repeat Simple_repeat 1 107 0 3 1388 975 48 0 0 chr6 105283790 105283916 -44233121 - B1_Mm SINE Alu -21 126 1 3 1388 517 347 39 39 chr6 105283916 105284144 -44232893 - B4A SINE B4 -61 231 4 3 1388 34955 42 3 22 chr6 105285082 105290267 -44226770 + L1Md_F2 LINE L1 543 5586 -297 3 1388 7772 57 2 5 chr6 105290267 105291266 -44225771 + L1Md_F2 LINE L1 5587 6582 0 3 1388 498 118 0 0 chr6 105291876 105291969 -44225068 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 1388 505 344 39 14 chr6 105291970 105292253 -44224784 - B4 SINE B4 0 292 3 3 1388 298 322 93 72 chr6 105293855 105294176 -44222861 - Lx8 LINE L1 -3 7470 7143 3 1388 1738 301 62 23 chr6 105294209 105294897 -44222140 - Lx8 LINE L1 -518 6955 6241 3 1388 21 0 0 0 chr6 105295064 105295085 -44221952 + AT_rich Low_complexity Low_complexity 1 21 0 3 1388 5648 100 2 10 chr6 105295684 105296726 -44220311 + L1VL4 LINE L1 171 1209 -2350 3 1388 237 33 0 0 chr6 105296726 105296756 -44220281 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1388 5471 81 6 13 chr6 105296756 105297213 -44219824 + L1VL4 LINE L1 1210 1659 -1900 3 1388 4919 189 57 40 chr6 105297268 105298492 -44218545 + RMER3D-int LTR ERVK 1532 2776 -66 3 1388 960 126 0 0 chr6 105298511 105298662 -44218375 + (GGAA)n Simple_repeat Simple_repeat 3 153 0 3 1388 303 366 49 7 chr6 105299279 105299422 -44217615 - MLT1A LTR MaLR -91 283 135 3 1388 724 343 11 39 chr6 105302161 105302446 -44214591 + B4A SINE B4 2 278 -14 3 1388 297 75 0 0 chr6 105303432 105303472 -44213565 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1388 534 310 30 54 chr6 105303608 105303775 -44213262 - RSINE1 SINE B4 0 165 3 3 1388 333 0 0 0 chr6 105304340 105304377 -44212660 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1388 2161 145 62 5 chr6 105304429 105304830 -44212207 + Lx2 LINE L1 6574 6997 0 3 1388 588 167 0 0 chr6 105305663 105305807 -44211230 + CT-rich Low_complexity Low_complexity 2 145 0 3 1388 591 40 0 0 chr6 105305807 105305881 -44211156 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1388 2563 112 15 7 chr6 105306037 105306449 -44210588 + L1_Mur1 LINE L1 4179 4593 -1293 3 1388 216 0 0 0 chr6 105306581 105306605 -44210432 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1388 504 0 0 0 chr6 105306605 105306660 -44210377 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1388 495 0 0 0 chr6 105306722 105306777 -44210260 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1388 465 19 0 0 chr6 105306777 105306830 -44210207 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1388 207 157 0 0 chr6 105307068 105307119 -44209918 + T-rich Low_complexity Low_complexity 1 51 0 3 1388 1129 62 14 0 chr6 105307120 105307264 -44209773 - B1_Mm SINE Alu 0 147 2 3 1388 440 326 112 13 chr6 105308635 105308868 -44208169 + MLT1D LTR MaLR 248 503 -2 3 1388 3930 209 56 29 chr6 105309849 105310387 -44206650 + RMER12 LTR ERVK 212 766 -556 3 1388 201 74 0 0 chr6 105310387 105310414 -44206623 + (TCTA)n Simple_repeat Simple_repeat 3 29 0 4 1388 3930 214 107 30 chr6 105310414 105310947 -44206090 + RMER12 LTR ERVK 767 1172 -150 3 1388 5481 114 0 1 chr6 105311066 105311858 -44205179 - L1_Mus4 LINE L1 -7 6629 5839 4 1388 420 20 0 0 chr6 105311973 105312022 -44205015 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1388 473 285 85 96 chr6 105312023 105312295 -44204742 - MT2B2 LTR ERVL -62 522 254 4 1388 394 311 8 39 chr6 105312288 105312415 -44204622 - MT2B2 LTR ERVL -401 132 10 4 1388 12559 82 3 0 chr6 105312555 105314281 -44202756 - L1Md_F2 LINE L1 -1852 4031 2301 4 1388 11808 69 2 3 chr6 105314280 105315838 -44201199 + L1Md_F2 LINE L1 4030 5586 -297 4 1388 7794 56 8 9 chr6 105315838 105316835 -44200202 + L1Md_F2 LINE L1 5587 6582 0 4 1388 1165 144 0 5 chr6 105316929 105317117 -44199920 + B2_Mm2 SINE B2 1 187 -8 4 1388 460 330 35 30 chr6 105317118 105317552 -44199485 - L1M1 LINE L1 -479 5821 5386 4 1388 402 318 41 16 chr6 105318044 105318287 -44198750 + L1MC3 LINE L1 5532 5780 -2005 4 1388 618 340 25 15 chr6 105318290 105318487 -44198550 + ID_B1 SINE B4 6 204 -20 4 1388 254 307 111 42 chr6 105318635 105318683 -44198354 + L1MC3 LINE L1 5901 5950 -1835 4 1388 213 119 0 0 chr6 105318683 105318725 -44198312 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1388 254 307 111 42 chr6 105318725 105319172 -44197865 + L1MC3 LINE L1 5951 6430 -1355 4 1388 213 109 18 35 chr6 105319295 105319352 -44197685 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 4 1388 376 259 254 77 chr6 105319643 105320257 -44196780 + L1MC3 LINE L1 6949 7671 -114 4 1388 215 342 185 25 chr6 105320435 105320597 -44196440 + MIRb SINE MIR 72 259 -9 4 1388 338 346 7 0 chr6 105324095 105324231 -44192806 - B1_Mur1 SINE Alu -12 137 1 4 1388 7750 43 1 0 chr6 105324326 105325266 -44191771 + L1Md_T LINE L1 5642 6582 0 4 1388 657 288 17 17 chr6 105325376 105325556 -44191481 + B3A SINE B2 2 181 -17 4 1388 22 0 0 0 chr6 105328193 105328215 -44188822 + AT_rich Low_complexity Low_complexity 1 22 0 4 1388 426 39 0 0 chr6 105328711 105328763 -44188274 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 4 1388 984 155 5 42 chr6 105328765 105328954 -44188083 - Lx3A LINE L1 -16 6965 6784 4 1388 333 68 0 0 chr6 105329145 105329189 -44187848 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1388 2649 214 57 6 chr6 105329343 105330023 -44187014 - Lx2B LINE L1 -11 6986 6250 4 1388 468 35 0 0 chr6 105331358 105331416 -44185621 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1388 386 378 32 0 chr6 105332357 105332513 -44184524 + ID_B1 SINE B4 5 165 -59 4 1388 829 165 12 0 chr6 105332574 105332738 -44184299 + GA-rich Low_complexity Low_complexity 1 166 0 4 1388 1082 254 60 123 chr6 105332738 105333267 -44183770 - Lx7 LINE L1 -211 7485 6990 4 1388 412 342 42 38 chr6 105333638 105334063 -44182974 - L1M2 LINE L1 -599 5698 5272 4 1388 22 0 0 0 chr6 105334413 105334435 -44182602 + AT_rich Low_complexity Low_complexity 1 22 0 4 1388 528 45 0 0 chr6 105336056 105336123 -44180914 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1388 221 378 47 35 chr6 105336854 105337024 -44180013 + MIR SINE MIR 2 173 -89 4 1388 293 213 3 1 chr6 105337739 105337819 -44179218 - L1_Mur3 LINE L1 -2284 3563 3468 4 1388 474 269 71 61 chr6 105339825 105340023 -44177014 + B3A SINE B2 17 216 0 4 1388 233 270 26 39 chr6 105340591 105340668 -44176369 + ID4_ SINE ID 8 83 0 4 1388 261 301 0 41 chr6 105340910 105341007 -44176030 - Charlie1a DNA MER1_type -534 921 829 4 1388 4858 83 7 19 chr6 105341197 105341875 -44175162 - L1_Mus3 LINE L1 -381 6257 5588 4 1388 2080 131 57 22 chr6 105341893 105342260 -44174777 + L1_Mus3 LINE L1 6253 6632 -6 4 1388 357 102 0 0 chr6 105342283 105342342 -44174695 + (A)n Simple_repeat Simple_repeat 1 59 0 4 1388 549 235 0 0 chr6 105342353 105342468 -44174569 - RMER17C LTR ERVK -295 115 1 4 1388 256 363 140 0 chr6 105342517 105342688 -44174349 - Charlie1a DNA MER1_type -649 806 612 4 1388 210 158 0 0 chr6 105342688 105342726 -44174311 + T-rich Low_complexity Low_complexity 1 38 0 4 1388 486 359 82 46 chr6 105342764 105343217 -44173820 - Charlie1a DNA MER1_type -951 504 36 4 1388 309 322 78 71 chr6 105343244 105343652 -44173385 + L1MB8 LINE L1 5520 5930 -248 4 1388 269 297 73 80 chr6 105343753 105343903 -44173134 + RSINE1 SINE B4 15 163 -2 4 1388 269 89 0 22 chr6 105344327 105344373 -44172664 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1388 809 271 72 38 chr6 105344416 105344915 -44172122 - L1MA6 LINE L1 0 6300 5774 4 1388 569 202 40 0 chr6 105345030 105345154 -44171883 + B3 SINE B2 87 215 -1 4 1388 34 84 0 0 chr6 105345202 105345285 -44171752 + AT_rich Low_complexity Low_complexity 1 83 0 4 1388 195 42 0 0 chr6 105345343 105345367 -44171670 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 4 1388 228 277 55 62 chr6 105345921 105346067 -44170970 + L1M5 LINE L1 2686 2830 -3316 4 1388 820 286 189 3 chr6 105346844 105347135 -44169902 + ORR1D1 LTR MaLR 1 345 -29 4 1388 3154 173 44 25 chr6 105347500 105348278 -44168759 + RLTR13D2 LTR ERVK 1 1023 0 4 1388 308 443 32 16 chr6 105348528 105348900 -44168137 - L1MEa LINE L1 -5603 467 90 4 1388 234 155 79 40 chr6 105348916 105349017 -44168020 + (TATAA)n Simple_repeat Simple_repeat 1 105 0 4 1388 558 344 0 0 chr6 105349374 105349560 -44167477 + Lx8 LINE L1 6821 7006 -467 4 1388 285 300 119 0 chr6 105349612 105349772 -44167265 + Lx9 LINE L1 7339 7517 -127 4 1388 1127 96 0 6 chr6 105349924 105350092 -44166945 + (TA)n Simple_repeat Simple_repeat 2 168 0 4 1388 678 189 23 8 chr6 105350121 105350249 -44166788 - B3 SINE B2 -86 130 1 4 1388 257 311 71 36 chr6 105350287 105350427 -44166610 + MER5A1 DNA MER1_type 10 154 -12 4 1388 4517 140 26 59 chr6 105351326 105351888 -44165149 + Lx2 LINE L1 6177 6738 -259 4 1388 1152 74 0 0 chr6 105351888 105352036 -44165001 + B1_Mus1 SINE Alu 1 148 0 4 1388 4517 140 26 59 chr6 105352036 105352321 -44164716 + Lx2 LINE L1 6739 6996 -1 4 1388 266 91 51 68 chr6 105352397 105352456 -44164581 - Lx LINE L1 -297 6357 6300 4 1388 217 292 82 36 chr6 105352992 105353102 -44163935 + MIRb SINE MIR 26 140 -128 4 1388 444 267 24 24 chr6 105353335 105353445 -44163592 - RMER15 LTR ERVL -37 538 429 4 1388 1872 160 41 124 chr6 105353445 105353880 -44163157 + RLTR16 LTR ERVK 2 400 -105 4 1388 2933 228 36 8 chr6 105353944 105354551 -44162486 - Lx6 LINE L1 -10 7450 6827 4 1388 4527 236 52 24 chr6 105354889 105355176 -44161861 - Lx6 LINE L1 -640 6820 6522 4 1388 1907 151 62 40 chr6 105355176 105355576 -44161461 - RLTR9E LTR ERVK 0 409 1 4 1388 4811 207 34 150 chr6 105355576 105358301 -44158736 - Lx6 LINE L1 -939 6521 4114 4 1388 1100 214 24 31 chr6 105358301 105358332 -44158705 - Lx6 LINE L1 -3791 2089 2059 4 1388 252 0 0 0 chr6 105358332 105358360 -44158677 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1388 1100 214 24 31 chr6 105358360 105358622 -44158415 - Lx6 LINE L1 -3822 2058 1798 4 1388 3284 222 65 13 chr6 105358622 105360155 -44156882 - Lx6 LINE L1 -3958 1922 298 4 1388 2856 81 5 8 chr6 105360691 105361091 -44155946 + L1Md_F3 LINE L1 5042 5440 -443 4 1388 8214 35 9 0 chr6 105361091 105362076 -44154961 + L1Md_F3 LINE L1 5589 6582 -2 4 1388 183 114 0 0 chr6 105362104 105362139 -44154898 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1388 250 315 23 74 chr6 105362767 105362942 -44154095 + L1M5 LINE L1 4883 5048 -1098 4 1388 441 0 0 0 chr6 105363495 105363544 -44153493 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1388 513 0 0 0 chr6 105363544 105363600 -44153437 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1388 848 264 36 5 chr6 105363976 105364170 -44152867 - B3 SINE B2 -9 207 8 4 1388 5213 109 42 3 chr6 105364507 105365918 -44151119 - L1VL2 LINE L1 -1992 1623 147 4 1388 6782 148 17 29 chr6 105365915 105366192 -44150845 + Lx LINE L1 5428 5701 -182 4 1388 204 67 0 0 chr6 105366192 105366222 -44150815 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 4 1388 6782 118 20 25 chr6 105366222 105367176 -44149861 + Lx LINE L1 5702 6654 0 4 1388 327 146 0 0 chr6 105367177 105367232 -44149805 + (A)n Simple_repeat Simple_repeat 1 55 0 4 1388 1203 219 4 9 chr6 105368971 105369197 -44147840 + URR1B DNA MER1_type 1 225 0 4 1388 579 15 0 0 chr6 105369338 105369406 -44147631 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1388 1817 125 46 0 chr6 105369668 105369972 -44147065 + L1_Mus4 LINE L1 6313 6630 -6 4 1388 218 221 38 25 chr6 105370412 105370444 -44146593 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 4 1388 429 66 0 0 chr6 105370444 105370505 -44146532 + (TATG)n Simple_repeat Simple_repeat 2 62 0 4 1388 218 221 38 25 chr6 105370505 105370551 -44146486 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 4 1388 402 85 0 0 chr6 105370581 105370640 -44146397 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1388 280 238 57 0 chr6 105370936 105371041 -44145996 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 4 1388 249 98 0 0 chr6 105371041 105371082 -44145955 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1388 40064 23 5 6 chr6 105371208 105377557 -44139480 - L1Md_A LINE L1 0 6582 233 4 1388 460 203 5 27 chr6 105377585 105377684 -44139353 - B4 SINE B4 -67 98 1 4 1388 21 0 0 0 chr6 105377881 105377902 -44139135 + AT_rich Low_complexity Low_complexity 1 21 0 4 1388 204 209 0 0 chr6 105377988 105378031 -44139006 + CT-rich Low_complexity Low_complexity 2 44 0 4 1388 203 194 0 29 chr6 105379484 105379553 -44137484 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 4 1388 22 35 0 0 chr6 105380001 105380030 -44137007 + AT_rich Low_complexity Low_complexity 1 29 0 4 1388 199 377 53 0 chr6 105380161 105380275 -44136762 + MIR SINE MIR 111 230 -32 4 1388 223 229 0 0 chr6 105380770 105380818 -44136219 + G-rich Low_complexity Low_complexity 1 48 0 4 1388 368 296 27 18 chr6 105381292 105381402 -44135635 - MLT1A1 LTR MaLR -13 395 285 4 1389 292 262 95 86 chr6 105383410 105383714 -44133323 + L1M3 LINE L1 5055 5361 -779 4 1389 213 237 0 0 chr6 105383719 105383757 -44133280 + B1F2 SINE Alu 7 44 -105 4 1389 440 308 42 36 chr6 105384394 105384559 -44132478 + B4A SINE B4 4 169 -123 4 1389 402 79 0 0 chr6 105384677 105384740 -44132297 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1389 27 29 0 0 chr6 105385438 105385472 -44131565 + AT_rich Low_complexity Low_complexity 1 34 0 4 1389 351 44 0 0 chr6 105385754 105385799 -44131238 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1389 709 76 20 40 chr6 105385799 105385949 -44131088 + (CAGAGA)n Simple_repeat Simple_repeat 4 150 0 4 1389 249 266 293 32 chr6 105386913 105387071 -44129966 + B3 SINE B2 11 209 -7 4 1389 266 235 24 36 chr6 105388174 105388258 -44128779 - MTEb LTR MaLR -19 360 278 4 1389 330 265 25 25 chr6 105388485 105388605 -44128432 - Lx9 LINE L1 -181 7463 7344 4 1389 1294 233 45 3 chr6 105388626 105388936 -44128101 + Lx9 LINE L1 7028 7350 -294 5 1389 317 267 23 0 chr6 105389375 105389461 -44127576 - L1MCa LINE L1 -5487 1021 934 5 1389 604 310 14 36 chr6 105389469 105389690 -44127347 + B3 SINE B2 1 216 0 5 1389 207 162 0 0 chr6 105389714 105389751 -44127286 + C-rich Low_complexity Low_complexity 3 39 0 5 1389 7206 82 9 62 chr6 105390327 105391478 -44125559 - MTA_Mm-int LTR MaLR -8 1090 1 5 1389 2835 74 0 5 chr6 105391478 105391860 -44125177 - MTA_Mm LTR MaLR 0 396 17 5 1389 44 56 0 0 chr6 105392166 105392238 -44124799 + AT_rich Low_complexity Low_complexity 1 72 0 5 1389 431 372 0 0 chr6 105392657 105392794 -44124243 - ID_B1 SINE B4 -6 218 82 5 1389 581 281 52 12 chr6 105392972 105393145 -44123892 + B3A SINE B2 1 180 -18 5 1389 192 111 74 0 chr6 105394491 105394572 -44122465 + (TA)n Simple_repeat Simple_repeat 2 88 0 5 1389 234 136 0 0 chr6 105394734 105394778 -44122259 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 5 1389 339 25 0 0 chr6 105394853 105394893 -44122144 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1389 1444 240 20 14 chr6 105394902 105395253 -44121784 + Lx7 LINE L1 6200 6552 -1144 5 1389 1898 196 57 22 chr6 105395269 105395652 -44121385 - RMER6A LTR ERVK -12 744 345 5 1389 591 15 0 0 chr6 105395652 105395720 -44121317 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 1389 1898 196 57 22 chr6 105395720 105395789 -44121248 - RMER6A LTR ERVK -412 344 276 5 1389 6223 137 17 2 chr6 105395789 105397312 -44119725 - Lx LINE L1 -75 6579 5032 5 1389 1567 193 37 32 chr6 105397312 105397660 -44119377 - RMER6A LTR ERVK -406 350 1 5 1389 3051 230 43 85 chr6 105397667 105398317 -44118720 + Lx7 LINE L1 6555 7215 -481 5 1389 648 181 165 0 chr6 105398317 105398444 -44118593 + B1_Mur4 SINE Alu 3 150 0 5 1389 3051 230 43 85 chr6 105398444 105398832 -44118205 + Lx7 LINE L1 7216 7550 -146 5 1389 432 37 0 0 chr6 105398841 105398895 -44118142 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1389 2377 186 94 85 chr6 105398977 105399660 -44117377 + RMER6C LTR ERVK 1 689 -1 5 1389 999 267 78 45 chr6 105399661 105399900 -44117137 + ORR1D2 LTR MaLR 24 266 -104 5 1389 2867 77 44 0 chr6 105399900 105400290 -44116747 - MTB_Mm LTR MaLR 0 407 1 5 1389 999 267 78 45 chr6 105400290 105400383 -44116654 + ORR1D2 LTR MaLR 267 367 -3 5 1389 24 0 0 0 chr6 105401375 105401399 -44115638 + AT_rich Low_complexity Low_complexity 1 24 0 5 1389 452 236 28 9 chr6 105401425 105401532 -44115505 - ORR1D2 LTR MaLR 0 370 262 5 1389 1229 41 0 0 chr6 105401533 105401680 -44115357 + B1_Mus2 SINE Alu 1 147 0 5 1389 248 70 23 0 chr6 105401690 105401733 -44115304 + (CAAAAA)n Simple_repeat Simple_repeat 4 47 0 5 1389 542 340 58 54 chr6 105401735 105401996 -44115041 - ORR1D2 LTR MaLR -95 275 14 5 1389 192 339 32 73 chr6 105402057 105402181 -44114856 + MIR SINE MIR 103 221 -41 5 1389 471 246 171 23 chr6 105402730 105402946 -44114091 - Lx9 LINE L1 -6 7638 7391 5 1389 182 139 47 0 chr6 105403606 105403649 -44113388 + T-rich Low_complexity Low_complexity 4 48 0 5 1389 218 176 19 19 chr6 105405308 105405360 -44111677 + (TA)n Simple_repeat Simple_repeat 1 52 0 5 1389 495 238 7 67 chr6 105405362 105405497 -44111540 - B1_Mur2 SINE Alu -2 147 21 5 1389 413 292 0 0 chr6 105405553 105405659 -44111378 - PB1D9 SINE Alu -10 110 5 5 1389 807 83 0 0 chr6 105405661 105405782 -44111255 + (TG)n Simple_repeat Simple_repeat 2 122 0 5 1389 456 19 0 0 chr6 105405784 105405837 -44111200 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1389 454 348 82 0 chr6 105405840 105406024 -44111013 - ID_B1 SINE B4 -21 203 5 5 1389 184 412 30 12 chr6 105406294 105406461 -44110576 + MIRb SINE MIR 34 203 -65 5 1389 310 281 87 10 chr6 105406565 105406669 -44110368 + PB1D10 SINE Alu 6 117 0 5 1389 188 329 84 14 chr6 105406756 105406827 -44110210 + L2a LINE L2 3335 3410 -16 5 1389 333 310 96 27 chr6 105407650 105407942 -44109095 - L1MC4 LINE L1 -403 7639 7328 5 1389 441 0 0 0 chr6 105408370 105408419 -44108618 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1389 210 37 0 0 chr6 105409220 105409247 -44107790 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 5 1389 8812 132 11 59 chr6 105409247 105410958 -44106079 - Lx3_Mus LINE L1 -23 6986 5354 5 1389 1032 92 7 0 chr6 105410958 105411099 -44105938 - B1_Mus1 SINE Alu 0 148 7 5 1389 8812 132 11 59 chr6 105411099 105412286 -44104751 - Lx3_Mus LINE L1 -23 5353 4219 5 1389 34431 51 8 4 chr6 105412287 105417586 -44099451 + L1Md_T LINE L1 306 5586 -297 5 1389 8401 37 0 0 chr6 105417586 105418582 -44098455 + L1Md_T LINE L1 5587 6582 0 5 1389 18851 96 29 23 chr6 105418582 105422127 -44094910 - L1_Mur1 LINE L1 -1648 4238 676 5 1389 1013 225 15 81 chr6 105422126 105422460 -44094577 - L1_Mur1 LINE L1 -6668 316 5 5 1389 266 271 0 8 chr6 105422502 105422621 -44094416 + CT-rich Low_complexity Low_complexity 3 120 0 5 1389 414 53 0 0 chr6 105423001 105423058 -44093979 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 5 1389 21 36 0 0 chr6 105423220 105423248 -44093789 + AT_rich Low_complexity Low_complexity 1 28 0 5 1389 187 270 31 16 chr6 105424334 105424398 -44092639 + MIR SINE MIR 74 138 -124 5 1389 315 0 0 0 chr6 105425558 105425593 -44091444 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1389 407 319 44 16 chr6 105425689 105425855 -44091182 - B4A SINE B4 -29 263 98 5 1389 326 345 95 86 chr6 105426609 105426958 -44090079 - ORR1E LTR MaLR -4 355 4 5 1389 606 314 118 59 chr6 105427294 105427531 -44089506 + B4A SINE B4 28 278 -14 5 1389 952 269 28 102 chr6 105427946 105428328 -44088709 + RMER19C LTR ERVK 1 371 -366 5 1389 1413 101 0 18 chr6 105428328 105428551 -44088486 - L1Md_F2 LINE L1 -12 6570 6352 5 1389 1285 267 26 89 chr6 105428551 105428933 -44088104 + RMER19C LTR ERVK 254 611 0 5 1389 408 55 0 0 chr6 105430057 105430112 -44086925 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1389 3368 196 40 17 chr6 105430251 105430943 -44086094 - RMER6D LTR ERVK -10 710 3 5 1389 351 333 65 19 chr6 105431146 105431577 -44085460 + L1M5 LINE L1 2870 3320 -2826 5 1389 393 75 0 0 chr6 105432371 105432424 -44084613 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1389 219 362 0 0 chr6 105432659 105432728 -44084309 + ID4_ SINE ID 6 74 -9 5 1389 21 36 0 0 chr6 105434541 105434569 -44082468 + AT_rich Low_complexity Low_complexity 1 28 0 5 1389 195 42 0 0 chr6 105435434 105435458 -44081579 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1389 211 359 32 21 chr6 105435505 105435599 -44081438 - MIRm SINE MIR -131 145 51 5 1389 2527 133 35 72 chr6 105435993 105436515 -44080522 + RLTR31A_Mm LTR ERVK 2 561 0 5 1389 422 352 62 17 chr6 105436516 105436695 -44080342 - B4A SINE B4 -97 195 9 5 1389 1776 171 61 26 chr6 105436763 105436888 -44080149 - RMER1C Other Other 0 1342 1196 5 1389 1400 23 6 0 chr6 105436888 105437060 -44079977 + (GAA)n Simple_repeat Simple_repeat 2 174 0 5 1389 1776 171 61 26 chr6 105437060 105437313 -44079724 - RMER1C Other Other -147 1195 951 5 1389 374 358 42 88 chr6 105437478 105437717 -44079320 + MLT1G3 LTR MaLR 227 454 -141 5 1389 414 307 143 65 chr6 105437726 105438047 -44078990 - ORR1E LTR MaLR -10 349 4 5 1389 297 344 25 43 chr6 105438047 105438197 -44078840 + MLT1G3 LTR MaLR 447 593 -2 5 1389 2126 127 15 6 chr6 105438724 105439058 -44077979 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1389 5996 38 4 8 chr6 105439060 105439834 -44077203 - IAPEz-int LTR ERVK -2 6479 5709 5 1389 2940 25 0 0 chr6 105439825 105440182 -44076855 - IAPEz-int LTR ERVK -2124 4357 4001 5 1389 346 125 0 0 chr6 105440180 105440236 -44076801 - IAPEz-int LTR ERVK -3707 2774 2719 5 1389 16893 54 31 21 chr6 105440235 105442550 -44074487 - IAPEz-int LTR ERVK -4136 2345 8 5 1389 2126 127 15 6 chr6 105442550 105442884 -44074153 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1389 306 102 43 14 chr6 105444171 105444241 -44072796 + L1Md_A LINE L1 6508 6579 -3 5 1389 519 276 34 11 chr6 105444242 105444418 -44072619 - MER2 DNA MER2_type -87 258 79 5 1389 202 290 0 16 chr6 105444906 105444969 -44072068 + CT-rich Low_complexity Low_complexity 1 62 0 5 1389 687 71 0 0 chr6 105446139 105446237 -44070800 + (TG)n Simple_repeat Simple_repeat 2 99 0 5 1389 1678 267 41 38 chr6 105446301 105446589 -44070448 - Lx9 LINE L1 -390 7254 6970 5 1389 333 0 0 0 chr6 105446589 105446626 -44070411 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1389 333 0 0 0 chr6 105446632 105446669 -44070368 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1389 1678 267 41 38 chr6 105446669 105446929 -44070108 - Lx9 LINE L1 -683 6961 6698 5 1389 1185 73 6 17 chr6 105447380 105447560 -44069477 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 5 1389 22 35 0 0 chr6 105448289 105448318 -44068719 + AT_rich Low_complexity Low_complexity 1 29 0 5 1389 558 167 34 22 chr6 105448718 105448896 -44068141 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1389 219 125 0 0 chr6 105448888 105448928 -44068109 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1389 378 0 0 0 chr6 105449630 105449672 -44067365 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1389 559 298 12 42 chr6 105449782 105449950 -44067087 + RSINE1 SINE B4 3 165 0 5 1389 26 64 0 0 chr6 105449982 105450029 -44067008 + AT_rich Low_complexity Low_complexity 1 47 0 5 1389 185 103 0 0 chr6 105450482 105450511 -44066526 - L2b LINE L2 -18 3357 3329 5 1389 235 368 11 0 chr6 105451838 105451925 -44065112 + LTR31 LTR ERV1 239 326 -293 5 1389 180 0 0 0 chr6 105452049 105452069 -44064968 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5 1389 701 323 16 65 chr6 105452123 105452371 -44064666 - B4A SINE B4 -56 236 1 5 1389 482 293 68 17 chr6 105452735 105452912 -44064125 + MER3 DNA MER1_type 16 201 -8 5 1389 24 32 0 0 chr6 105452948 105452979 -44064058 + AT_rich Low_complexity Low_complexity 1 31 0 5 1389 385 259 65 0 chr6 105453181 105453289 -44063748 - PB1D9 SINE Alu -2 118 4 5 1389 484 323 8 0 chr6 105453785 105453918 -44063119 + B1F SINE Alu 2 135 -14 5 1389 251 279 36 9 chr6 105453953 105454065 -44062972 + GA-rich Low_complexity Low_complexity 4 118 0 5 1389 1570 252 7 67 chr6 105454224 105454671 -44062366 + MTC LTR MaLR 2 421 0 5 1389 4121 223 65 35 chr6 105454675 105454798 -44062239 + MTC-int LTR MaLR 5 127 -1131 5 1389 7722 30 0 0 chr6 105454798 105455708 -44061329 + L1Md_A LINE L1 5673 6582 0 5 1389 4121 223 65 35 chr6 105455708 105456037 -44061000 + MTC-int LTR MaLR 128 449 -809 5 1389 4372 161 71 23 chr6 105456037 105456858 -44060179 + RMER13A LTR ERVK 1 860 0 5 1389 4121 223 65 35 chr6 105456858 105457403 -44059634 + MTC-int LTR MaLR 450 1001 -257 5 1389 234 0 0 0 chr6 105457403 105457429 -44059608 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 5 1389 4121 223 65 35 chr6 105457429 105457486 -44059551 + MTC-int LTR MaLR 1002 1092 -166 5 1389 8622 117 19 4 chr6 105457486 105458788 -44058249 + Lx2 LINE L1 5673 6994 -3 5 1389 498 202 106 12 chr6 105458796 105458964 -44058073 + MTC-int LTR MaLR 1060 1243 -15 5 1389 701 275 50 5 chr6 105458964 105459228 -44057809 + MTC LTR MaLR 1 285 -134 5 1389 1117 201 17 43 chr6 105459177 105459478 -44057559 - RLTR31A_Mm LTR ERVK -79 482 167 5 1389 259 164 0 92 chr6 105459481 105459494 -44057543 - Lx LINE L1 -28 6626 6617 5 1389 3012 45 2 46 chr6 105459494 105459909 -44057128 + L1Md_F3 LINE L1 6188 6584 0 5 1389 259 164 0 92 chr6 105459909 105459982 -44057055 - Lx LINE L1 -38 6616 6548 5 1389 888 148 58 37 chr6 105459992 105460181 -44056856 - RLTR31A_Mm LTR ERVK -391 193 1 5 1389 795 226 19 0 chr6 105460183 105460342 -44056695 + MTC LTR MaLR 184 345 -76 5 1389 1981 152 65 40 chr6 105460337 105460707 -44056330 + ORR1B1 LTR MaLR 14 392 -2 6 1389 386 202 0 12 chr6 105460707 105460786 -44056251 + MTC LTR MaLR 339 416 -5 5 1389 189 0 0 0 chr6 105460978 105460999 -44056038 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1389 861 262 115 19 chr6 105461108 105461474 -44055563 + L1M2 LINE L1 2287 2687 -3456 6 1389 340 323 114 12 chr6 105461512 105461678 -44055359 - B3 SINE B2 0 216 34 6 1389 749 299 13 70 chr6 105461797 105462027 -44055010 + B4A SINE B4 2 218 -74 6 1389 1056 301 69 15 chr6 105462215 105462808 -44054229 + L1MA6 LINE L1 5675 6299 -1 6 1389 272 330 40 10 chr6 105463388 105463489 -44053548 + PB1D10 SINE Alu 6 109 -8 6 1389 34 24 0 0 chr6 105463666 105463707 -44053330 + AT_rich Low_complexity Low_complexity 1 41 0 6 1389 297 0 0 0 chr6 105463712 105463745 -44053292 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1389 363 309 65 22 chr6 105464292 105464477 -44052560 + Charlie20a DNA Charlie 85 277 -530 6 1389 851 129 6 0 chr6 105465163 105465341 -44051696 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 1389 424 262 82 0 chr6 105466069 105466191 -44050846 - MER5A DNA MER1_type -3 186 55 6 1389 207 69 0 0 chr6 105466193 105466222 -44050815 + (CTG)n Simple_repeat Simple_repeat 2 30 0 6 1389 780 11 0 0 chr6 105466323 105466412 -44050625 + (TTTTG)n Simple_repeat Simple_repeat 3 91 0 6 1389 580 308 56 26 chr6 105467428 105467661 -44049376 + RLTR26 LTR ERVK 178 417 -225 6 1389 383 333 85 0 chr6 105469004 105469169 -44047868 + B3A SINE B2 4 182 -16 6 1389 1710 149 86 0 chr6 105469217 105469518 -44047519 - IAPEY3_LTR LTR ERVK -5 327 1 6 1389 213 65 0 0 chr6 105469568 105469599 -44047438 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 6 1389 287 328 35 47 chr6 105469995 105470180 -44046857 + MIRb SINE MIR 1 176 -86 6 1389 638 299 56 0 chr6 105470793 105470990 -44046047 - B3 SINE B2 -6 210 3 6 1389 2042 176 25 37 chr6 105471363 105471764 -44045273 - RMER10B LTR ERVL -2 396 1 6 1389 273 57 0 0 chr6 105472256 105472291 -44044746 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1389 1124 90 0 0 chr6 105472291 105472435 -44044602 - B1_Mus2 SINE Alu -3 144 1 6 1389 588 53 0 0 chr6 105472636 105472712 -44044325 + (TA)n Simple_repeat Simple_repeat 2 77 0 6 1389 618 261 18 24 chr6 105472712 105472875 -44044162 - B3 SINE B2 -49 167 4 6 1389 427 289 33 0 chr6 105472876 105472997 -44044040 - MER3 DNA MER1_type -82 127 3 6 1389 24 0 0 0 chr6 105473380 105473404 -44043633 + AT_rich Low_complexity Low_complexity 1 24 0 6 1389 421 230 28 35 chr6 105474181 105474325 -44042712 + L1MC3 LINE L1 7582 7724 -61 6 1389 993 240 103 82 chr6 105474328 105474503 -44042534 + RMER10B LTR ERVL 1 194 -204 6 1389 531 0 0 0 chr6 105474503 105474562 -44042475 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 1389 993 240 103 82 chr6 105474562 105474776 -44042261 + RMER10B LTR ERVL 195 398 0 6 1389 324 0 0 0 chr6 105475019 105475055 -44041982 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1389 425 59 0 29 chr6 105475055 105475124 -44041913 + (CAGAGA)n Simple_repeat Simple_repeat 3 70 0 6 1389 314 204 9 114 chr6 105475124 105475229 -44041808 + HAL1-3A_ME LINE L1 1969 2062 -796 6 1389 229 390 66 18 chr6 105475264 105475431 -44041606 - MER5A DNA MER1_type -14 175 1 6 1389 180 111 0 0 chr6 105475604 105475631 -44041406 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1389 504 0 0 0 chr6 105475652 105475708 -44041329 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1389 212 225 0 0 chr6 105475710 105475750 -44041287 + GA-rich Low_complexity Low_complexity 1 40 0 6 1389 24 53 0 0 chr6 105476791 105476829 -44040208 + AT_rich Low_complexity Low_complexity 1 38 0 6 1389 1161 119 0 0 chr6 105476856 105477186 -44039851 + (TA)n Simple_repeat Simple_repeat 1 330 0 6 1389 210 204 20 0 chr6 105478498 105478547 -44038490 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1389 2665 201 72 58 chr6 105478588 105479437 -44037600 - RMER17D LTR ERVK -3 886 26 6 1389 447 19 0 0 chr6 105479450 105479502 -44037535 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 1389 21 36 0 0 chr6 105479662 105479690 -44037347 + AT_rich Low_complexity Low_complexity 1 28 0 6 1389 4963 225 50 7 chr6 105479692 105480717 -44036320 - Lx5 LINE L1 -3 7047 5979 6 1389 3340 183 31 35 chr6 105480703 105481450 -44035587 + Lx4A LINE L1 4544 5287 -590 6 1389 2922 159 30 7 chr6 105481915 105482539 -44034498 + Lx4A LINE L1 5280 5933 -1117 6 1389 1653 168 40 3 chr6 105482535 105482833 -44034204 - Lx4A LINE L1 -469 6589 6281 6 1389 2139 168 24 52 chr6 105482822 105483243 -44033794 + Lx4A LINE L1 6578 6986 -72 6 1389 21 0 0 0 chr6 105483259 105483280 -44033757 + AT_rich Low_complexity Low_complexity 1 21 0 6 1389 3369 30 5 0 chr6 105483331 105483725 -44033312 + MTA_Mm LTR MaLR 1 396 0 6 1389 746 179 83 6 chr6 105484473 105484653 -44032384 - L1M6 LINE L1 -6300 196 3 6 1389 3001 231 62 64 chr6 105484991 105485304 -44031733 - Lx6 LINE L1 -18 7678 7351 6 1389 450 36 0 0 chr6 105485304 105485360 -44031677 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1389 3001 231 62 64 chr6 105485360 105485963 -44031074 - Lx6 LINE L1 -346 7350 6764 6 1389 217 0 0 159 chr6 105485969 105486151 -44030886 + (GTTTG)n Simple_repeat Simple_repeat 2 154 0 6 1389 4062 227 58 13 chr6 105486155 105487443 -44029594 - Lx6 LINE L1 -733 6727 5372 6 1389 198 0 0 0 chr6 105487541 105487563 -44029474 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 6 1389 21 0 0 0 chr6 105489204 105489225 -44027812 + AT_rich Low_complexity Low_complexity 1 21 0 6 1389 234 348 111 11 chr6 105490495 105490585 -44026452 + L1MDa LINE L1 667 765 -5868 6 1389 553 316 68 64 chr6 105490866 105491306 -44025731 + L1MDa LINE L1 1049 1490 -5143 6 1389 448 267 85 79 chr6 105491308 105491662 -44025375 + L1MD1 LINE L1 5878 6233 -9 6 1389 548 225 81 29 chr6 105491677 105491947 -44025090 + L1MDa LINE L1 4953 5250 -1284 6 1389 350 292 138 9 chr6 105492160 105492378 -44024659 - Lx8 LINE L1 -28 7445 7200 6 1389 1154 55 0 14 chr6 105492415 105492563 -44024474 + B1_Mm SINE Alu 2 147 0 6 1389 224 30 30 0 chr6 105492568 105492601 -44024436 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1389 672 282 117 11 chr6 105492985 105493250 -44023787 - Lx3C LINE L1 -2 6974 6682 6 1389 1110 93 15 90 chr6 105494170 105494371 -44022666 + B2_Mm2 SINE B2 3 188 -7 6 1389 21 36 0 0 chr6 105494640 105494668 -44022369 + AT_rich Low_complexity Low_complexity 1 28 0 6 1389 26 30 0 0 chr6 105495109 105495142 -44021895 + AT_rich Low_complexity Low_complexity 1 33 0 6 1389 243 0 0 0 chr6 105495843 105495870 -44021167 + (TTG)n Simple_repeat Simple_repeat 3 29 0 6 1389 367 317 0 0 chr6 105495954 105496055 -44020982 + MT2A LTR ERVL 360 460 -73 6 1389 351 0 0 0 chr6 105496373 105496412 -44020625 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1389 2059 132 3 58 chr6 105496630 105496975 -44020062 - ORR1A3 LTR MaLR 0 326 1 6 1389 242 271 191 4 chr6 105497338 105497590 -44019447 + L1M2 LINE L1 1614 1912 -4937 6 1389 33 66 0 0 chr6 105497779 105497840 -44019197 + AT_rich Low_complexity Low_complexity 1 61 0 6 1389 1562 286 61 35 chr6 105497997 105498573 -44018464 + RLTR1 LTR ERV1 30 620 -4 6 1389 2968 169 2 18 chr6 105499499 105499999 -44017038 + RLTR17 LTR ERVK 1 492 -200 6 1389 1156 192 5 0 chr6 105500000 105500198 -44016839 + RLTR17 LTR ERVK 494 692 0 1 1389 3049 204 138 23 chr6 105500862 105501524 -44015513 + RLTR25B LTR ERVK 1 723 -305 2 1389 453 50 0 0 chr6 105501524 105501584 -44015453 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 1389 3049 204 138 23 chr6 105501584 105501692 -44015345 + RLTR25B LTR ERVK 724 858 -170 2 1389 197 59 57 38 chr6 105501868 105501921 -44015116 + T-rich Low_complexity Low_complexity 3 56 0 4 1389 773 237 59 78 chr6 105501964 105502076 -44014961 + RLTR25B LTR ERVK 845 948 -155 2 1389 387 0 0 0 chr6 105502076 105502119 -44014918 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1389 510 17 0 0 chr6 105502119 105502177 -44014860 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1389 773 237 59 78 chr6 105502177 105502319 -44014718 + RLTR25B LTR ERVK 949 1094 -9 2 1389 392 258 42 31 chr6 105502334 105502430 -44014607 - MLT1K LTR MaLR -266 329 233 7 1389 1089 98 5 32 chr6 105502535 105502725 -44014312 - MusHAL1 LINE L1 -1798 914 730 8 1389 11173 161 19 3 chr6 105502715 105503117 -44013920 + Lx LINE L1 3893 4315 -1568 9 1389 4578 112 4 33 chr6 105503117 105503840 -44013197 + L1_Mus4 LINE L1 5933 6634 -2 1 1389 11173 139 16 2 chr6 105503840 105506154 -44010883 + Lx LINE L1 4316 6652 -2 9 1389 568 258 8 38 chr6 105507142 105507275 -44009762 + ID_B1 SINE B4 80 208 -16 1 1389 522 0 0 0 chr6 105507277 105507335 -44009702 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1389 24 0 0 0 chr6 105508289 105508313 -44008724 + AT_rich Low_complexity Low_complexity 1 24 0 1 1389 2116 206 46 19 chr6 105508458 105508919 -44008118 - RMER5 LTR ERV1 0 534 62 1 1389 843 256 130 56 chr6 105509229 105509333 -44007704 - Lx7 LINE L1 0 7696 7594 1 1389 1708 226 38 32 chr6 105509333 105509776 -44007261 - RLTR41 LTR ERV1 0 446 1 1 1389 843 256 130 56 chr6 105509776 105510102 -44006935 - Lx7 LINE L1 -103 7593 7234 1 1389 24 53 0 0 chr6 105510258 105510296 -44006741 + AT_rich Low_complexity Low_complexity 1 38 0 1 1389 627 233 95 56 chr6 105511544 105511776 -44005261 - Lx5 LINE L1 -3 7047 6807 1 1389 300 258 76 63 chr6 105512479 105512612 -44004425 - RMER17C LTR ERVK 0 410 280 1 1389 1216 84 0 11 chr6 105512612 105512793 -44004244 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 1389 300 258 76 63 chr6 105512793 105512882 -44004155 - RMER17C LTR ERVK -131 279 185 1 1390 894 158 0 0 chr6 105513703 105513867 -44003170 + (TA)n Simple_repeat Simple_repeat 1 164 0 2 1390 551 313 0 74 chr6 105513867 105514043 -44002994 - RSINE1 SINE B4 0 165 3 2 1390 194 358 31 75 chr6 105514100 105514260 -44002777 - MIRm SINE MIR -117 159 7 2 1390 182 37 0 36 chr6 105514329 105514357 -44002680 + (TTAAA)n Simple_repeat Simple_repeat 1 27 0 2 1390 396 0 0 0 chr6 105514919 105514963 -44002074 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1390 703 249 32 3 chr6 105515994 105516172 -44000865 - B3 SINE B2 0 193 1 2 1390 28 48 0 0 chr6 105516415 105516457 -44000580 + AT_rich Low_complexity Low_complexity 1 42 0 2 1390 198 150 0 0 chr6 105516458 105516498 -44000539 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1390 572 294 16 58 chr6 105516510 105516698 -44000339 - B3A SINE B2 -16 182 3 2 1390 211 322 33 22 chr6 105516754 105516846 -44000191 - L3 LINE CR1 -3643 846 754 3 1390 203 0 0 36 chr6 105516973 105517001 -44000036 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1390 22 0 0 0 chr6 105517585 105517607 -43999430 + AT_rich Low_complexity Low_complexity 1 22 0 3 1390 729 291 16 35 chr6 105517643 105517835 -43999202 + B3A SINE B2 2 176 -22 3 1390 432 0 0 0 chr6 105517835 105517883 -43999154 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1390 351 0 0 0 chr6 105517883 105517921 -43999116 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1390 443 292 9 165 chr6 105517921 105517957 -43999080 + B2_Mm2 SINE B2 162 194 -1 3 1390 360 0 0 0 chr6 105519632 105519672 -43997365 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 1390 200 325 50 17 chr6 105520320 105520439 -43996598 - MIRb SINE MIR -11 257 135 3 1390 377 70 0 17 chr6 105520720 105520778 -43996259 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1390 240 35 0 0 chr6 105521286 105521315 -43995722 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1390 589 350 45 30 chr6 105521341 105521609 -43995428 - B4A SINE B4 -19 273 2 4 1390 410 270 79 142 chr6 105521722 105521912 -43995125 + B3A SINE B2 5 182 -16 4 1390 411 38 0 0 chr6 105521925 105521978 -43995059 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 4 1390 369 119 68 0 chr6 105521979 105522038 -43994999 + HAL1-3A_ME LINE L1 1976 2038 -820 4 1390 1577 248 58 10 chr6 105522047 105522446 -43994591 + RLTR20D LTR ERVK 51 468 -100 4 1390 258 180 65 16 chr6 105522475 105522537 -43994500 - RLTR20D LTR ERVK -23 545 481 4 1390 450 0 0 0 chr6 105522539 105522589 -43994448 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1390 3511 168 79 10 chr6 105522624 105523298 -43993739 - RMER6D LTR ERVK 0 720 1 4 1390 1393 253 50 27 chr6 105523300 105523702 -43993335 - Lx9 LINE L1 -217 7427 7017 4 1390 273 276 168 30 chr6 105524914 105524949 -43992088 + RLTR25B LTR ERVK 350 402 -626 4 1390 807 137 16 0 chr6 105524949 105525073 -43991964 + B1_Mus1 SINE Alu 2 127 -21 5 1390 21 36 0 0 chr6 105525083 105525111 -43991926 + AT_rich Low_complexity Low_complexity 1 28 0 5 1390 1451 291 23 60 chr6 105525565 105525936 -43991101 - Lx6 LINE L1 -3 7457 7104 5 1390 2686 36 145 0 chr6 105525936 105526295 -43990742 + IAPLTR2a LTR ERVK 1 411 0 5 1390 1451 293 59 43 chr6 105526295 105526825 -43990212 - Lx6 LINE L1 -357 7103 6264 5 1390 1394 250 27 11 chr6 105526834 105527202 -43989835 + Lx6 LINE L1 5853 6226 -1234 5 1390 202 188 0 0 chr6 105527238 105527270 -43989767 + polypyrimidine Low_complexity Low_complexity 5 36 0 5 1390 216 0 0 0 chr6 105527270 105527294 -43989743 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 5 1390 369 102 0 0 chr6 105527296 105527355 -43989682 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1390 372 429 22 18 chr6 105527408 105527631 -43989406 - B4A SINE B4 -13 279 56 5 1390 693 315 139 0 chr6 105528197 105528413 -43988624 - MTEa LTR MaLR -133 246 1 5 1390 1494 180 32 25 chr6 105528842 105529156 -43987881 + ORR1B1 LTR MaLR 28 343 -51 5 1390 478 232 86 0 chr6 105529306 105529457 -43987580 + L1MA6 LINE L1 6130 6293 -7 6 1390 302 273 65 43 chr6 105529536 105529628 -43987409 + B1_Mus1 SINE Alu 9 102 -46 6 1390 1848 136 14 92 chr6 105529616 105529964 -43987073 - ORR1A4 LTR MaLR -8 321 1 6 1390 4802 192 32 127 chr6 105529964 105530158 -43986879 - ORR1A4-int LTR MaLR 0 1792 1599 6 1390 1488 85 14 14 chr6 105530158 105530372 -43986665 + L1_Mus1 LINE L1 6354 6567 0 6 1390 8095 164 60 88 chr6 105530372 105532300 -43984737 - ORR1A4-int LTR MaLR -192 1771 2 6 1390 411 102 0 0 chr6 105532301 105532360 -43984677 - ORR1A4 LTR MaLR 0 329 271 6 1390 21100 165 96 26 chr6 105532810 105533754 -43983283 + Lx5 LINE L1 889 2003 -3874 6 1390 249 83 0 0 chr6 105533754 105533790 -43983247 + (CATA)n Simple_repeat Simple_repeat 2 37 0 6 1390 21100 175 49 32 chr6 105533790 105533843 -43983194 + Lx5 LINE L1 2004 2054 -3823 6 1390 804 77 0 0 chr6 105533843 105533960 -43983077 + (CA)n Simple_repeat Simple_repeat 2 118 0 6 1390 21100 180 49 30 chr6 105533960 105538839 -43978198 + Lx5 LINE L1 2055 7011 -39 6 1390 1715 134 61 64 chr6 105538839 105539166 -43977871 - ORR1A3 LTR MaLR 0 326 1 6 1390 6824 197 47 24 chr6 105539166 105539205 -43977832 + Lx5 LINE L1 7012 7050 0 6 1390 1538 42 0 5 chr6 105539566 105539758 -43977279 - L1_Mus1 LINE L1 -1 6566 6376 6 1390 37669 42 5 3 chr6 105539776 105546003 -43971034 - L1Md_T LINE L1 0 6585 246 6 1390 1624 241 84 30 chr6 105546391 105546857 -43970180 + Lx6 LINE L1 6958 7448 -12 7 1390 251 347 10 48 chr6 105548775 105548878 -43968159 - MLT1J1 LTR MaLR -330 114 16 7 1390 432 0 0 0 chr6 105549030 105549078 -43967959 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1390 181 273 0 0 chr6 105549092 105549147 -43967890 - MIR SINE MIR -27 235 181 7 1390 406 39 0 0 chr6 105549899 105549951 -43967086 - L1_Mur2 LINE L1 -1411 4466 4415 7 1390 241 439 9 0 chr6 105550288 105550402 -43966635 - MLT1J2 LTR MaLR -303 145 31 7 1390 238 353 14 43 chr6 105550499 105550638 -43966399 - L4 LINE RTE -277 1752 1618 7 1390 504 290 52 114 chr6 105551587 105551797 -43965240 - B3A SINE B2 -1 197 1 7 1390 699 35 0 0 chr6 105551874 105551960 -43965077 + (CA)n Simple_repeat Simple_repeat 2 87 0 7 1390 1397 272 14 14 chr6 105552102 105552520 -43964517 + MTD LTR MaLR 1 418 -1 7 1390 409 217 127 74 chr6 105552959 105553148 -43963889 - Tigger14a DNA MER2_type -23 301 103 8 1390 1097 108 6 0 chr6 105553279 105553455 -43963582 + (GA)n Simple_repeat Simple_repeat 1 177 0 8 1390 237 280 99 126 chr6 105553473 105553624 -43963413 - MLT1A LTR MaLR -227 147 1 8 1390 21 0 0 0 chr6 105554017 105554038 -43962999 + AT_rich Low_complexity Low_complexity 1 21 0 8 1390 400 326 7 56 chr6 105554075 105554218 -43962819 - RSINE1 SINE B4 -28 137 2 8 1390 244 340 60 0 chr6 105556305 105556405 -43960632 + Lx7 LINE L1 7200 7305 -391 8 1390 267 326 36 18 chr6 105556406 105556631 -43960406 + Lx7 LINE L1 7453 7681 -15 8 1390 1002 43 130 0 chr6 105556942 105557080 -43959957 + L1_Mur1 LINE L1 2223 2378 -3508 8 1390 700 302 4 70 chr6 105557189 105557417 -43959620 + B3 SINE B2 2 214 -2 8 1390 526 278 71 2 chr6 105558112 105558258 -43958779 + B3A SINE B2 1 151 -47 8 1390 180 77 0 0 chr6 105558258 105558284 -43958753 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1390 215 324 62 68 chr6 105558284 105558329 -43958708 + B2_Mm2 SINE B2 144 190 -5 8 1390 198 0 0 0 chr6 105559033 105559055 -43957982 + (CAA)n Simple_repeat Simple_repeat 2 23 0 9 1390 529 78 11 32 chr6 105559688 105559781 -43957256 + (CA)n Simple_repeat Simple_repeat 2 92 0 9 1390 4968 245 55 13 chr6 105560458 105561686 -43955351 + Lx7 LINE L1 6090 7368 -328 9 1390 245 163 0 55 chr6 105561703 105561794 -43955243 + T-rich Low_complexity Low_complexity 2 87 0 9 1390 4021 56 14 2 chr6 105561849 105562364 -43954673 - L1_Mus1 LINE L1 0 6567 6047 9 1390 1201 196 49 14 chr6 105562364 105562648 -43954389 + Lx7 LINE L1 7400 7693 -3 9 1390 309 182 0 13 chr6 105562727 105562805 -43954232 - Lx LINE L1 0 6654 6578 9 1390 14737 163 16 29 chr6 105562827 105565153 -43951884 - L1_Mur1 LINE L1 -723 5163 2870 9 1390 933 140 0 0 chr6 105565153 105565331 -43951706 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 9 1390 14737 163 16 29 chr6 105565331 105565875 -43951162 - L1_Mur1 LINE L1 -3017 2869 2330 9 1390 1716 224 27 3 chr6 105565888 105566219 -43950818 - Lx5 LINE L1 -104 6946 6608 9 1390 1132 199 89 14 chr6 105566225 105566505 -43950532 - Lx5 LINE L1 -730 6320 6020 9 1390 2142 224 36 14 chr6 105566505 105566998 -43950039 - RLTR11A2 LTR ERVK 0 527 24 9 1390 1964 147 11 34 chr6 105567024 105567382 -43949655 - Lx5 LINE L1 -1027 6023 5674 9 1390 588 193 0 0 chr6 105567374 105567488 -43949549 + L1_Mur2 LINE L1 5020 5133 -744 1 1390 515 16 16 0 chr6 105567920 105567984 -43949053 + (TAA)n Simple_repeat Simple_repeat 2 66 0 1 1390 997 206 5 0 chr6 105568938 105569147 -43947890 + L1_Mur2 LINE L1 211 420 -6292 1 1390 3280 81 18 43 chr6 105569147 105569640 -43947397 + L1_Mus2 LINE L1 6086 6566 0 1 1390 219 36 0 0 chr6 105570111 105570139 -43946898 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1390 8155 37 11 0 chr6 105570174 105570321 -43946716 - L1Md_T LINE L1 0 6582 6436 1 1390 549 0 0 0 chr6 105570321 105570382 -43946655 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1390 38439 45 9 1 chr6 105570382 105576517 -43940520 - L1Md_T LINE L1 -147 6435 307 1 1390 21 0 0 0 chr6 105577094 105577115 -43939922 + AT_rich Low_complexity Low_complexity 1 21 0 1 1390 216 67 0 0 chr6 105578167 105578197 -43938840 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 1390 556 302 81 39 chr6 105578609 105579043 -43937994 - L1MA4 LINE L1 -364 5936 5485 1 1390 589 304 122 43 chr6 105579196 105579450 -43937587 - B4A SINE B4 -16 276 3 1 1390 255 303 62 53 chr6 105579462 105579583 -43937454 + MER102c DNA MER1_type 156 276 -55 1 1390 22 35 0 0 chr6 105581538 105581567 -43935470 + AT_rich Low_complexity Low_complexity 1 29 0 1 1390 799 287 46 91 chr6 105582041 105582436 -43934601 + MTE2a LTR MaLR 3 379 0 1 1390 3547 50 0 2 chr6 105583058 105583501 -43933536 + L1Md_F3 LINE L1 6112 6553 -31 1 1390 219 69 0 0 chr6 105583501 105583530 -43933507 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1390 462 357 78 76 chr6 105584025 105584474 -43932563 - MLT1K LTR MaLR -145 450 1 1 1390 513 0 0 0 chr6 105585100 105585157 -43931880 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1390 1227 41 0 0 chr6 105585640 105585787 -43931250 + B1_Mm SINE Alu 1 147 0 1 1390 4647 173 68 18 chr6 105586570 105587482 -43929555 - RMER17B LTR ERVK 0 958 1 1 1390 408 55 0 0 chr6 105587518 105587573 -43929464 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1390 191 374 129 9 chr6 105587808 105587924 -43929113 - L2c LINE L2 -229 3158 3029 1 1390 1302 293 90 62 chr6 105589293 105589827 -43927210 - Lx5 LINE L1 -18 7032 6484 1 1390 3081 219 24 7 chr6 105589835 105590907 -43926130 - Lx5 LINE L1 -695 6355 5254 1 1390 305 169 28 0 chr6 105590919 105590990 -43926047 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1390 302 118 0 19 chr6 105590990 105591042 -43925995 - Lx5 LINE L1 -654 5226 5176 1 1390 22 0 0 0 chr6 105591188 105591210 -43925827 + AT_rich Low_complexity Low_complexity 1 22 0 1 1390 10485 138 8 6 chr6 105591664 105594192 -43922845 - L1_Mus4 LINE L1 -4 6632 4103 1 1390 834 296 25 0 chr6 105594397 105594596 -43922441 + B3 SINE B2 13 216 0 1 1390 557 276 40 50 chr6 105595453 105595655 -43921382 - B3 SINE B2 -15 201 2 1 1390 285 167 0 0 chr6 105596274 105596328 -43920709 + T-rich Low_complexity Low_complexity 1 54 0 1 1390 980 101 7 0 chr6 105596333 105596471 -43920566 - B1_Mus1 SINE Alu -5 143 5 1 1390 1147 148 57 5 chr6 105596799 105597009 -43920028 - L1_Mm LINE L1 -325 5558 5338 1 1390 7915 115 23 55 chr6 105597007 105598337 -43918700 - Lx3A LINE L1 -2 6979 5693 1 1390 1416 135 32 8 chr6 105598333 105598580 -43918457 - Lx3A LINE L1 -522 5355 5103 1 1390 8054 170 17 19 chr6 105598582 105599987 -43917050 + Lx2 LINE L1 5591 6993 -4 1 1390 2068 64 18 3 chr6 105600448 105600732 -43916305 - L1_Mus3 LINE L1 -6 6632 6345 1 1390 241 269 108 0 chr6 105600817 105600910 -43916127 + MamRep4096 DNA hAT? 264 366 -60 1 1390 303 399 76 53 chr6 105601926 105602188 -43914849 - B4A SINE B4 -11 281 14 1 1390 1033 88 0 0 chr6 105602477 105602614 -43914423 + B1_Mm SINE Alu 1 137 -10 1 1390 844 95 15 0 chr6 105602614 105602751 -43914286 + (GAAAA)n Simple_repeat Simple_repeat 2 140 0 1 1390 189 0 0 0 chr6 105603534 105603555 -43913482 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 1390 260 272 78 0 chr6 105604298 105604401 -43912636 - ORSL-2b DNA Tip100 -143 365 255 1 1390 210 71 0 0 chr6 105604618 105604646 -43912391 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1390 273 89 0 0 chr6 105604984 105605029 -43912008 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1390 433 306 69 13 chr6 105605190 105605422 -43911615 + L1MA6 LINE L1 6056 6300 0 1 1390 444 109 63 206 chr6 105605453 105605563 -43911474 + RMER17C LTR ERVK 76 184 -226 1 1390 459 0 0 0 chr6 105605563 105605614 -43911423 + (TCC)n Simple_repeat Simple_repeat 2 52 0 1 1390 444 109 63 206 chr6 105605614 105605737 -43911300 + RMER17C LTR ERVK 185 274 -136 1 1390 799 75 17 0 chr6 105605737 105605857 -43911180 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 1 1390 444 109 63 206 chr6 105605857 105605875 -43911162 + RMER17C LTR ERVK 275 292 -118 1 1390 248 215 0 58 chr6 105606439 105606508 -43910529 + B3 SINE B2 152 216 0 1 1390 405 58 0 0 chr6 105606517 105606569 -43910468 + (GGA)n Simple_repeat Simple_repeat 2 53 0 1 1390 290 298 42 42 chr6 105607148 105607386 -43909651 + L1MC LINE L1 4992 5229 -917 1 1390 397 357 40 13 chr6 105607432 105607812 -43909225 + L1MC LINE L1 5291 5680 -664 1 1390 285 281 61 18 chr6 105607894 105608057 -43908980 + L1MEg LINE L1 1031 1200 -4884 1 1390 255 103 0 0 chr6 105608180 105608219 -43908818 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1390 194 207 0 17 chr6 105608615 105608674 -43908363 + GA-rich Low_complexity Low_complexity 2 59 0 1 1390 397 345 40 35 chr6 105610257 105610455 -43906582 + MLT1H-int LTR MaLR 388 586 -823 1 1390 384 304 9 0 chr6 105610520 105610632 -43906405 - Tigger5 DNA MER2_type -3 2403 2291 1 1390 461 388 18 0 chr6 105610628 105610852 -43906185 - Tigger5 DNA MER2_type -2164 242 15 1 1390 407 326 49 18 chr6 105611151 105611348 -43905689 - B4A SINE B4 -87 205 1 1 1390 294 324 27 0 chr6 105611374 105611522 -43905515 - L1M4b LINE L1 -6385 949 798 1 1390 308 278 112 8 chr6 105612135 105612269 -43904768 - L1M4b LINE L1 -7151 183 36 1 1390 23 33 0 0 chr6 105612293 105612323 -43904714 + AT_rich Low_complexity Low_complexity 1 30 0 1 1390 34764 61 1 24 chr6 105612955 105618839 -43898198 + L1Md_T LINE L1 99 5586 -297 1 1390 8027 56 0 0 chr6 105618839 105619835 -43897202 + L1Md_T LINE L1 5587 6582 0 1 1390 1245 274 33 30 chr6 105620071 105620432 -43896605 - ORR1D2 LTR MaLR -8 362 1 1 1390 300 331 73 0 chr6 105620803 105620939 -43896098 + RSINE1 SINE B4 2 147 -18 1 1390 366 42 0 0 chr6 105620958 105621006 -43896031 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1390 336 338 7 68 chr6 105621027 105621173 -43895864 + B1F2 SINE Alu 8 144 -5 1 1390 363 292 73 34 chr6 105621187 105621364 -43895673 + L1M5 LINE L1 5614 5797 -327 1 1390 933 336 63 72 chr6 105621713 105622268 -43894769 - MLT1F2 LTR MaLR 0 560 11 1 1390 1110 332 54 55 chr6 105622796 105623373 -43893664 - MER82 DNA MER2_type 0 653 78 1 1390 194 62 31 0 chr6 105624059 105624091 -43892946 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1390 326 313 90 90 chr6 105624101 105624389 -43892648 - B4A SINE B4 -3 289 2 1 1390 318 26 0 0 chr6 105625848 105625887 -43891150 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 1 1390 195 129 0 0 chr6 105625892 105625923 -43891114 + (CGTG)n Simple_repeat Simple_repeat 4 34 0 1 1390 222 120 19 39 chr6 105626136 105626188 -43890849 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1390 189 0 0 0 chr6 105627614 105627635 -43889402 + (CCCCCG)n Simple_repeat Simple_repeat 4 24 0 1 1390 408 155 0 0 chr6 105628270 105628341 -43888696 + T-rich Low_complexity Low_complexity 1 71 0 1 1390 180 111 0 0 chr6 105631942 105631969 -43885068 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1390 261 0 0 0 chr6 105632973 105633002 -43884035 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1390 370 254 158 0 chr6 105633028 105633142 -43883895 - RSINE1 SINE B4 -31 134 3 1 1390 219 277 0 0 chr6 105633143 105633190 -43883847 - BC1_Mm scRNA scRNA -102 50 4 1 1390 372 295 113 27 chr6 105633507 105633657 -43883380 - MLT1J1 LTR MaLR -253 191 29 1 1390 857 121 14 0 chr6 105633925 105634066 -43882971 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 1 1390 295 250 20 10 chr6 105635017 105635118 -43881919 + Lx9 LINE L1 7536 7637 -7 1 1390 22 0 0 0 chr6 105635365 105635387 -43881650 + AT_rich Low_complexity Low_complexity 1 22 0 1 1390 576 286 7 33 chr6 105635959 105636111 -43880926 + B3 SINE B2 2 149 -67 1 1390 487 329 20 13 chr6 105637014 105637165 -43879872 - RSINE1 SINE B4 -3 162 11 1 1390 313 306 85 32 chr6 105637994 105638183 -43878854 - Tigger15a DNA TcMar -442 273 75 1 1390 356 276 193 34 chr6 105638308 105638484 -43878553 - B3 SINE B2 0 216 13 1 1390 22 35 0 0 chr6 105639169 105639198 -43877839 + AT_rich Low_complexity Low_complexity 1 29 0 1 1390 500 296 13 44 chr6 105639205 105639364 -43877673 + RSINE1 SINE B4 2 155 -10 1 1390 1254 73 0 0 chr6 105639365 105639544 -43877493 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1390 2474 71 22 0 chr6 105639658 105639982 -43877055 + L1_Mus1 LINE L1 6228 6558 -9 1 1390 288 0 0 0 chr6 105640884 105640916 -43876121 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1390 321 135 0 0 chr6 105641295 105641347 -43875690 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1 1390 1104 70 0 40 chr6 105641350 105641499 -43875538 - B1_Mus2 SINE Alu -4 143 1 1 1390 287 214 169 9 chr6 105642521 105642603 -43874434 + PB1D7 SINE Alu 12 110 -10 1 1390 251 114 23 0 chr6 105642892 105642936 -43874101 + (TTTTC)n Simple_repeat Simple_repeat 1 45 0 1 1391 447 194 0 0 chr6 105644051 105644154 -43872883 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 1 1391 387 41 0 0 chr6 105644287 105644336 -43872701 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1391 860 239 126 126 chr6 105644341 105644642 -43872395 - MT2A LTR ERVL -232 301 1 1 1391 468 62 0 0 chr6 105645343 105645407 -43871630 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1391 198 323 29 44 chr6 105645728 105645864 -43871173 - MER5B DNA MER1_type -39 139 6 1 1391 1745 305 21 25 chr6 105647021 105647728 -43869309 - Lx7 LINE L1 -388 7308 6605 1 1391 2613 111 55 45 chr6 105648143 105648613 -43868424 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1391 4577 18 28 0 chr6 105648613 105649181 -43867856 + IAPEz-int LTR ERVK 8 591 -5890 1 1391 424 38 0 0 chr6 105649213 105649266 -43867771 + IAPEz-int LTR ERVK 1359 1411 -5070 1 1391 721 121 8 8 chr6 105649265 105649382 -43867655 + IAPEz-int LTR ERVK 2236 2352 -5328 1 1391 6574 37 11 0 chr6 105649380 105650198 -43866839 + IAPEz-int LTR ERVK 5655 6481 0 2 1391 2636 107 55 45 chr6 105650198 105650668 -43866369 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1391 405 316 146 44 chr6 105651127 105651432 -43865605 + MLT2D LTR ERVL 1 341 -73 2 1391 306 194 0 0 chr6 105651610 105651677 -43865360 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 1391 30 0 0 0 chr6 105652164 105652194 -43864843 + AT_rich Low_complexity Low_complexity 1 30 0 2 1391 705 220 85 50 chr6 105652433 105652634 -43864403 + B3 SINE B2 4 211 -5 2 1391 249 306 12 0 chr6 105653060 105653145 -43863892 + CT-rich Low_complexity Low_complexity 2 87 0 2 1391 258 323 17 89 chr6 105653716 105653843 -43863194 + PB1D10 SINE Alu 2 117 0 2 1391 21 36 0 0 chr6 105654260 105654288 -43862749 + AT_rich Low_complexity Low_complexity 1 28 0 2 1391 366 364 33 0 chr6 105654449 105654570 -43862467 + B1F SINE Alu 8 132 -17 2 1391 33 0 0 0 chr6 105654718 105654751 -43862286 + AT_rich Low_complexity Low_complexity 1 33 0 2 1391 1010 269 54 38 chr6 105654757 105655128 -43861909 - Lx5 LINE L1 -18 7032 6656 2 1391 280 333 143 10 chr6 105655436 105655639 -43861398 - MIRb SINE MIR -25 243 14 2 1391 750 291 58 0 chr6 105656612 105656801 -43860236 - B3 SINE B2 -1 215 16 2 1391 363 23 0 0 chr6 105657268 105657312 -43859725 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1391 631 282 21 0 chr6 105657327 105657469 -43859568 - B3A SINE B2 -53 145 1 2 1391 1087 269 68 8 chr6 105657713 105658065 -43858972 - Lx6 LINE L1 -26 7434 7062 2 1391 441 0 0 0 chr6 105658126 105658175 -43858862 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 2 1391 220 316 40 30 chr6 105660297 105660398 -43856639 - MIRc SINE MIR -106 162 61 2 1391 503 250 119 0 chr6 105661615 105661724 -43855313 + B3 SINE B2 2 123 -93 2 1391 1089 214 5 0 chr6 105662215 105662439 -43854598 + URR1A DNA MER1_type 2 226 0 2 1391 225 257 13 67 chr6 105662752 105662827 -43854210 - MER46C DNA MER2_type -204 134 64 2 1391 259 347 122 39 chr6 105662908 105663091 -43853946 - MIRb SINE MIR -42 226 35 2 1391 2722 178 49 48 chr6 105663106 105663795 -43853242 - RMER6C LTR ERVK 0 690 1 2 1391 182 37 37 0 chr6 105664143 105664170 -43852867 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 2 1391 415 57 14 28 chr6 105666575 105666647 -43850390 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 2 1391 391 314 136 0 chr6 105666786 105666926 -43850111 + MER20 DNA MER1_type 2 160 -59 2 1391 425 303 82 25 chr6 105666977 105667220 -43849817 - MLT2B4 LTR ERVL -274 246 9 2 1391 1385 265 59 31 chr6 105667600 105668076 -43848961 + Lx7 LINE L1 6874 7362 -334 2 1391 435 19 0 0 chr6 105668078 105668130 -43848907 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 2 1391 5349 176 68 1 chr6 105668143 105669183 -43847854 - Lx2B LINE L1 -31 6969 5852 2 1391 261 194 32 0 chr6 105669290 105669352 -43847685 + Lx7 LINE L1 7394 7457 -239 2 1391 7093 58 1 0 chr6 105669577 105670471 -43846566 + L1Md_F2 LINE L1 4692 5586 -297 2 1391 7864 58 3 0 chr6 105670471 105671464 -43845573 + L1Md_F2 LINE L1 5587 6582 0 2 1391 21 71 0 0 chr6 105671546 105671588 -43845449 + AT_rich Low_complexity Low_complexity 1 42 0 2 1391 339 65 0 0 chr6 105671838 105671884 -43845153 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1391 1024 277 198 15 chr6 105673245 105673655 -43843382 + MLT2B1 LTR ERVL 1 485 -35 2 1391 1194 279 73 24 chr6 105673962 105674388 -43842649 - MER119 DNA MER1_type -3 580 134 2 1391 540 0 0 0 chr6 105674626 105674686 -43842351 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2 1391 536 270 51 47 chr6 105674693 105674907 -43842130 - B3 SINE B2 0 216 2 2 1391 394 263 156 31 chr6 105674919 105675111 -43841926 - ID_B1 SINE B4 -7 217 2 2 1391 423 56 0 0 chr6 105675554 105675608 -43841429 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 2 1391 985 110 34 0 chr6 105675616 105675762 -43841275 - B2_Mm2 SINE B2 -31 164 14 2 1391 1845 244 109 34 chr6 105675828 105676417 -43840620 + RMER1B Other Other 420 1052 -14 2 1391 6396 65 2 4 chr6 105676427 105677256 -43839781 + L1Md_F2 LINE L1 4758 5585 -298 2 1391 8152 44 0 0 chr6 105677257 105678238 -43838799 + L1Md_F2 LINE L1 5587 6567 -15 2 1391 205 313 12 0 chr6 105678341 105678424 -43838613 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 2 1391 482 285 90 50 chr6 105678601 105678878 -43838159 - B4A SINE B4 -4 288 1 2 1391 3842 157 16 27 chr6 105678950 105679690 -43837347 - RMER17A LTR ERVK -15 736 5 2 1391 512 302 118 63 chr6 105679752 105680067 -43836970 + MLT1D LTR MaLR 104 435 -70 2 1391 229 200 0 0 chr6 105680119 105680174 -43836863 + T-rich Low_complexity Low_complexity 1 55 0 2 1391 327 25 0 0 chr6 105681577 105681617 -43835420 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1391 937 104 15 0 chr6 105681617 105681752 -43835285 - B1_Mus2 SINE Alu -10 137 1 2 1391 1414 50 0 0 chr6 105682063 105682242 -43834795 - L1Md_T LINE L1 0 6582 6404 2 1391 671 273 45 5 chr6 105682715 105682914 -43834123 + B3 SINE B2 3 209 -7 2 1391 230 311 105 16 chr6 105682980 105683104 -43833933 - MER112 DNA MER1_type -114 147 13 2 1391 217 132 0 0 chr6 105683198 105683236 -43833801 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1391 231 36 0 0 chr6 105683414 105683442 -43833595 + (CTA)n Simple_repeat Simple_repeat 1 28 0 2 1391 249 305 0 12 chr6 105684261 105684344 -43832693 + CT-rich Low_complexity Low_complexity 1 82 0 2 1391 492 18 0 0 chr6 105686228 105686285 -43830752 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 2 1391 27 0 0 0 chr6 105686486 105686513 -43830524 + AT_rich Low_complexity Low_complexity 1 27 0 2 1391 3056 223 3 57 chr6 105686513 105686740 -43830297 - RMER1B Other Other -14 1052 855 2 1391 608 70 12 0 chr6 105686740 105686826 -43830211 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 2 1391 3056 223 3 57 chr6 105686826 105686847 -43830190 - RMER1B Other Other -212 854 837 2 1391 5097 142 9 52 chr6 105686847 105687751 -43829286 - Lx3B LINE L1 -3 6970 6106 2 1391 3056 223 3 57 chr6 105687751 105688237 -43828800 - RMER1B Other Other -230 836 357 2 1391 3505 119 63 2 chr6 105689357 105689897 -43827140 + Lx LINE L1 6082 6654 0 2 1391 251 305 26 15 chr6 105691539 105691634 -43825403 + L2b LINE L2 3090 3192 -195 2 1391 344 379 113 36 chr6 105691942 105692251 -43824786 + MamGypLTR3 LTR Gypsy 264 596 -243 2 1391 807 305 119 60 chr6 105692462 105692814 -43824223 + MTEb LTR MaLR 1 373 -6 2 1391 323 357 9 0 chr6 105692963 105693075 -43823962 - ID_B1 SINE B4 -9 215 103 2 1391 603 0 0 0 chr6 105694311 105694378 -43822659 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 1391 566 260 40 65 chr6 105694744 105694999 -43822038 - MT2A LTR ERVL -124 477 73 2 1391 568 242 22 36 chr6 105694969 105695106 -43821931 - MT2A LTR ERVL -398 135 1 2 1391 538 185 84 8 chr6 105695108 105695239 -43821798 - MERVL_2A-int LTR ERVL -2 5759 5619 2 1391 2080 203 55 124 chr6 105695256 105695470 -43821567 - MERVL_2A-int LTR ERVL -90 5671 5480 2 1391 5288 111 32 28 chr6 105695470 105696325 -43820712 - Lx3_Mus LINE L1 -8 7001 6144 2 1391 2080 203 55 124 chr6 105696325 105696818 -43820219 - MERVL_2A-int LTR ERVL -282 5479 5013 2 1391 299 333 49 0 chr6 105696903 105696984 -43820053 - ORR1E LTR MaLR -224 135 51 2 1391 256 326 7 49 chr6 105697043 105697185 -43819852 + BC1_Mm scRNA scRNA 2 137 -15 2 1391 204 83 0 53 chr6 105697479 105697517 -43819520 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 2 1391 1775 221 34 177 chr6 105698020 105698733 -43818304 - RMER19C LTR ERVK 0 611 1 2 1391 399 339 26 0 chr6 105698914 105699029 -43818008 + B1F SINE Alu 7 124 -25 2 1391 366 344 55 0 chr6 105699029 105699042 -43817995 + ID_B1 SINE B4 88 222 -2 2 1391 203 103 0 25 chr6 105699215 105699255 -43817782 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1391 237 299 59 15 chr6 105699637 105699705 -43817332 + ID4_ SINE ID 3 73 -10 2 1391 249 91 0 83 chr6 105699952 105700012 -43817025 + L1Md_F2 LINE L1 6524 6578 -4 2 1391 22 0 0 0 chr6 105700137 105700159 -43816878 + AT_rich Low_complexity Low_complexity 1 22 0 2 1391 21 0 0 0 chr6 105700684 105700705 -43816332 + AT_rich Low_complexity Low_complexity 1 21 0 2 1391 281 26 26 0 chr6 105700847 105700885 -43816152 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1391 1097 74 0 0 chr6 105701657 105701805 -43815232 + L1_Mus1 LINE L1 6420 6567 0 2 1391 329 306 95 34 chr6 105702313 105702492 -43814545 - B4A SINE B4 -94 198 9 2 1391 441 329 110 35 chr6 105702521 105702947 -43814090 - L1MA9 LINE L1 -222 6090 5633 2 1391 186 43 0 0 chr6 105702967 105702990 -43814047 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 2 1391 1579 272 13 8 chr6 105702990 105703375 -43813662 + MTD LTR MaLR 19 405 -14 2 1391 287 318 31 16 chr6 105703391 105703519 -43813518 - L1MA9 LINE L1 -681 5631 5502 2 1391 280 299 9 18 chr6 105703525 105703634 -43813403 + L1MA9 LINE L1 5401 5508 -804 2 1391 663 316 92 70 chr6 105703638 105704009 -43813028 + MTE2a LTR MaLR 1 379 0 2 1391 34 0 0 0 chr6 105704012 105704046 -43812991 + AT_rich Low_complexity Low_complexity 1 34 0 2 1391 2316 54 7 0 chr6 105704052 105704346 -43812691 - L1_Mus1 LINE L1 -1 6566 6271 2 1391 1646 62 5 0 chr6 105704346 105704554 -43812483 + L1_Mus1 LINE L1 6011 6219 -348 2 1391 468 0 0 0 chr6 105704895 105704947 -43812090 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1391 495 0 0 0 chr6 105704947 105705001 -43812036 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1391 309 51 0 0 chr6 105705107 105705146 -43811891 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1391 537 83 0 0 chr6 105705146 105705230 -43811807 + (GA)n Simple_repeat Simple_repeat 1 84 0 2 1391 472 376 51 0 chr6 105706025 105706182 -43810855 + ID_B1 SINE B4 49 213 -11 2 1391 38 81 0 0 chr6 105706340 105706427 -43810610 + AT_rich Low_complexity Low_complexity 1 87 0 2 1391 203 189 19 0 chr6 105707218 105707271 -43809766 + CT-rich Low_complexity Low_complexity 3 56 0 2 1391 3435 30 2 0 chr6 105707690 105708085 -43808952 - MTA_Mm LTR MaLR 0 396 1 2 1391 229 328 103 8 chr6 105709322 105709439 -43807598 + RMER15 LTR ERVL 432 559 -16 2 1391 614 281 10 75 chr6 105710393 105710593 -43806444 + B3A SINE B2 12 198 0 2 1391 949 284 83 3 chr6 105710774 105711074 -43805963 - MLT1A0 LTR MaLR -41 324 1 2 1391 329 234 26 0 chr6 105712131 105712208 -43804829 + Lx9 LINE L1 7261 7339 -305 2 1391 290 405 17 0 chr6 105712223 105712339 -43804698 + MER2 DNA MER2_type 206 323 -22 3 1391 741 99 101 47 chr6 105712706 105712841 -43804196 + Lx9 LINE L1 7315 7455 -189 3 1391 186 71 0 0 chr6 105712841 105712869 -43804168 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1391 741 139 276 5 chr6 105712869 105712974 -43804063 + Lx9 LINE L1 7456 7640 -4 3 1391 369 0 0 0 chr6 105713833 105713874 -43803163 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1391 315 0 0 0 chr6 105713874 105713908 -43803129 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1391 823 301 0 95 chr6 105713909 105714203 -43802834 - B4A SINE B4 -26 266 1 3 1391 781 232 175 38 chr6 105715342 105715707 -43801330 - MTD LTR MaLR 0 419 5 3 1391 318 106 0 0 chr6 105716110 105716157 -43800880 + (CATA)n Simple_repeat Simple_repeat 4 50 0 3 1391 229 311 158 20 chr6 105716407 105716610 -43800427 - MER33 DNA MER1_type -67 257 27 3 1391 28 0 0 0 chr6 105717230 105717258 -43799779 + AT_rich Low_complexity Low_complexity 1 28 0 3 1391 2805 76 44 3 chr6 105718989 105719373 -43797664 + MTB LTR MaLR 1 400 0 3 1391 2731 33 35 12 chr6 105719583 105719921 -43797116 - ORR1A0 LTR MaLR 0 346 1 3 1391 1010 89 5 0 chr6 105720694 105720897 -43796140 + (GA)n Simple_repeat Simple_repeat 1 204 0 3 1391 445 319 149 65 chr6 105720931 105721179 -43795858 - B4 SINE B4 -12 280 12 3 1391 634 330 64 61 chr6 105722051 105722396 -43794641 + MLT1A0 LTR MaLR 2 347 -18 3 1391 442 210 62 36 chr6 105722683 105722821 -43794216 - MTD LTR MaLR -14 405 267 3 1391 632 62 10 0 chr6 105723164 105723261 -43793776 + L1_Mus1 LINE L1 6469 6566 -1 3 1391 614 226 223 8 chr6 105723595 105723769 -43793268 - B3 SINE B2 -8 208 16 3 1391 290 211 37 0 chr6 105724379 105724488 -43792549 + (TA)n Simple_repeat Simple_repeat 1 113 0 3 1391 188 182 23 0 chr6 105724516 105724560 -43792477 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 3 1391 207 0 0 0 chr6 105726475 105726498 -43790539 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1391 233 145 16 0 chr6 105728412 105728474 -43788563 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1391 294 29 0 0 chr6 105728521 105728556 -43788481 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1391 937 126 0 15 chr6 105728556 105728693 -43788344 - B1_Mus1 SINE Alu -11 137 3 3 1391 347 325 112 57 chr6 105729330 105729627 -43787410 - L2a LINE L2 -6 3420 3036 3 1391 225 303 181 83 chr6 105730088 105730232 -43786805 + MER20 DNA MER1_type 13 170 -49 3 1391 486 0 0 0 chr6 105730511 105730565 -43786472 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 3 1391 970 161 9 9 chr6 105731304 105731535 -43785502 + CT-rich Low_complexity Low_complexity 1 231 0 3 1391 194 299 58 67 chr6 105732557 105732661 -43784376 - MIRm SINE MIR -155 121 19 3 1391 732 23 0 0 chr6 105732711 105732797 -43784240 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 1391 294 216 0 0 chr6 105733866 105733940 -43783097 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 1391 21 57 0 0 chr6 105734625 105734660 -43782377 + AT_rich Low_complexity Low_complexity 1 35 0 3 1391 379 278 66 44 chr6 105734909 105735011 -43782026 - B3A SINE B2 -7 186 91 3 1391 4357 33 0 2 chr6 105735011 105735530 -43781507 + L1Md_A LINE L1 6064 6581 -1 3 1391 379 274 67 29 chr6 105735530 105735594 -43781443 - B3A SINE B2 -106 92 22 3 1391 284 167 21 0 chr6 105735715 105735763 -43781274 + Lx7 LINE L1 7123 7171 -525 3 1391 469 330 42 5 chr6 105735759 105735948 -43781089 + Lx8 LINE L1 6791 6986 -487 3 1391 205 195 0 0 chr6 105736292 105736333 -43780704 + T-rich Low_complexity Low_complexity 1 41 0 3 1391 595 230 121 126 chr6 105738573 105738772 -43778265 - B3A SINE B2 0 198 1 3 1391 602 101 0 20 chr6 105738788 105738879 -43778158 + (GAA)n Simple_repeat Simple_repeat 3 93 0 3 1391 1170 117 0 0 chr6 105738879 105739058 -43777979 + (GGA)n Simple_repeat Simple_repeat 2 180 0 3 1391 602 101 0 20 chr6 105739058 105739067 -43777970 + (GAA)n Simple_repeat Simple_repeat 1 8 0 3 1391 950 109 0 0 chr6 105739180 105739317 -43777720 + B1_Mus2 SINE Alu 1 137 -10 3 1391 441 0 0 0 chr6 105739317 105739366 -43777671 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1391 342 0 0 0 chr6 105740774 105740812 -43776225 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1391 196 322 75 34 chr6 105740976 105741122 -43775915 - L2b LINE L2 -239 3148 3000 3 1391 21 0 0 0 chr6 105741878 105741899 -43775138 + AT_rich Low_complexity Low_complexity 1 21 0 3 1391 7617 108 41 13 chr6 105742618 105743792 -43773245 - Lx3_Mus LINE L1 0 7009 5803 3 1391 4496 66 2 0 chr6 105744154 105744733 -43772304 + L1Md_F2 LINE L1 5007 5586 -297 3 1391 7487 72 6 3 chr6 105744733 105745717 -43771320 + L1Md_F2 LINE L1 5587 6573 -9 3 1391 507 292 116 24 chr6 105746318 105746525 -43770512 + Lx8 LINE L1 6270 6495 -978 3 1391 242 250 13 0 chr6 105746514 105746590 -43770447 + L1MB7 LINE L1 5929 6005 -179 3 1391 21 0 0 0 chr6 105747206 105747227 -43769810 + AT_rich Low_complexity Low_complexity 1 21 0 3 1391 38 22 0 0 chr6 105747371 105747416 -43769621 + AT_rich Low_complexity Low_complexity 1 45 0 3 1391 987 136 71 0 chr6 105747422 105747620 -43769417 - Lx2A1 LINE L1 -3 7005 6794 3 1391 193 197 33 0 chr6 105747849 105747910 -43769127 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 1391 261 222 0 0 chr6 105749413 105749476 -43767561 + CT-rich Low_complexity Low_complexity 2 64 0 3 1391 343 352 80 15 chr6 105749632 105749831 -43767206 + MER58B DNA MER1_type 1 212 -129 3 1391 192 77 0 0 chr6 105750530 105750556 -43766481 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 3 1391 219 231 0 200 chr6 105750556 105750621 -43766416 - ID4_ SINE ID -12 71 20 3 1391 1604 284 20 41 chr6 105750853 105750971 -43766066 + Lx6 LINE L1 6772 6895 -565 3 1391 615 27 0 0 chr6 105750971 105751044 -43765993 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1391 1604 284 20 41 chr6 105751044 105751198 -43765839 + Lx6 LINE L1 6896 7043 -417 3 1391 767 31 0 10 chr6 105751198 105751297 -43765740 + (CAAAC)n Simple_repeat Simple_repeat 2 99 0 3 1391 1604 284 19 42 chr6 105751297 105751529 -43765508 + Lx6 LINE L1 7044 7250 -210 3 1391 238 386 118 44 chr6 105751548 105751819 -43765218 + B4A SINE B4 2 292 0 3 1391 441 81 0 0 chr6 105751857 105751919 -43765118 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1391 536 42 14 0 chr6 105751919 105751989 -43765048 + (GA)n Simple_repeat Simple_repeat 2 73 0 3 1391 528 286 9 94 chr6 105752672 105752884 -43764153 - Lx5 LINE L1 0 7050 6857 3 1391 1511 282 11 24 chr6 105752982 105753406 -43763631 - Lx5 LINE L1 -558 6902 6455 3 1391 243 343 15 0 chr6 105753434 105753501 -43763536 + RMER30 DNA MER1_type 9 76 -126 3 1391 261 83 0 0 chr6 105753502 105753538 -43763499 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1391 455 48 16 0 chr6 105753549 105753611 -43763426 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 1391 225 266 136 17 chr6 105753639 105753815 -43763222 - MER33 DNA MER1_type -16 308 112 3 1391 1006 228 24 0 chr6 105755091 105755302 -43761735 - B3 SINE B2 0 216 1 3 1391 448 183 12 12 chr6 105755418 105755501 -43761536 + B4A SINE B4 4 86 -206 3 1391 350 74 19 0 chr6 105755655 105755709 -43761328 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1391 280 141 0 45 chr6 105757227 105757294 -43759743 + CT-rich Low_complexity Low_complexity 2 65 0 3 1391 633 183 9 9 chr6 105757333 105757449 -43759588 - B1_Mus1 SINE Alu -1 147 32 3 1391 5256 138 79 42 chr6 105758971 105759261 -43757776 - Lx3B LINE L1 -1 6972 6664 3 1391 778 84 0 0 chr6 105759261 105759380 -43757657 - L1Md_A LINE L1 0 6582 6464 3 1391 5256 138 79 42 chr6 105759380 105760077 -43756960 - Lx3B LINE L1 -310 6663 5948 3 1391 189 0 0 0 chr6 105760078 105760099 -43756938 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1391 4270 143 176 6 chr6 105760119 105760964 -43756073 - L1Md_A LINE L1 0 6582 5594 3 1391 1389 274 115 50 chr6 105761299 105761802 -43755235 + Lx8 LINE L1 6731 7271 -202 3 1391 1943 82 0 15 chr6 105761802 105762076 -43754961 - L1Md_F2 LINE L1 -3 6579 6310 3 1391 1389 274 115 50 chr6 105762076 105762130 -43754907 + Lx8 LINE L1 7272 7323 -150 3 1391 2138 236 66 53 chr6 105762790 105763491 -43753546 - Lx9 LINE L1 0 7644 6935 3 1391 327 261 5 83 chr6 105763503 105763628 -43753409 - B1F2 SINE Alu -25 124 3 3 1391 227 296 45 90 chr6 105763860 105763949 -43753088 - ORR1E LTR MaLR -223 136 52 3 1391 331 263 137 26 chr6 105764011 105764128 -43752909 - B1F SINE Alu -19 130 1 3 1391 5695 18 0 0 chr6 105764337 105764988 -43752049 + L1Md_A LINE L1 5930 6580 -2 3 1391 23 0 0 0 chr6 105765084 105765107 -43751930 + AT_rich Low_complexity Low_complexity 1 23 0 3 1391 1862 192 64 11 chr6 105765641 105766015 -43751022 - ORR1B1 LTR MaLR 0 394 1 3 1391 25 31 0 0 chr6 105767616 105767648 -43749389 + AT_rich Low_complexity Low_complexity 1 32 0 3 1391 3568 233 18 40 chr6 105767652 105768520 -43748517 - Lx2B LINE L1 -13 6987 6139 3 1391 426 165 0 0 chr6 105768533 105768612 -43748425 - Lx LINE L1 -14 6640 6562 3 1391 821 297 54 54 chr6 105768751 105769029 -43748008 - MTD LTR MaLR -81 338 61 3 1391 6868 70 1 0 chr6 105769564 105770443 -43746594 - L1_Mus1 LINE L1 0 6567 5688 3 1391 1942 104 11 0 chr6 105770444 105770714 -43746323 + L1_Mus1 LINE L1 5453 5725 -158 3 1391 495 335 35 6 chr6 105771525 105771696 -43745341 + B3A SINE B2 8 183 -15 3 1391 8078 41 0 2 chr6 105771934 105773117 -43743920 + L1Md_F3 LINE L1 5377 6557 -27 3 1391 369 0 0 0 chr6 105773117 105773158 -43743879 + (TAA)n Simple_repeat Simple_repeat 3 43 0 3 1391 48 43 0 0 chr6 105774128 105774197 -43742840 + AT_rich Low_complexity Low_complexity 1 69 0 3 1391 251 122 20 0 chr6 105774221 105774270 -43742767 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1391 831 359 40 4 chr6 105774530 105774804 -43742233 + B4 SINE B4 5 288 -4 3 1391 279 54 0 0 chr6 105774848 105774885 -43742152 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1392 471 278 91 19 chr6 105776579 105776772 -43740265 - B3 SINE B2 0 216 5 3 1392 414 0 0 0 chr6 105778475 105778521 -43738516 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1392 591 15 0 0 chr6 105778521 105778588 -43738449 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1392 522 0 0 0 chr6 105778588 105778645 -43738392 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1392 1385 88 0 0 chr6 105780551 105780744 -43736293 + L1_Mus2 LINE L1 6373 6565 -1 4 1392 5880 161 28 21 chr6 105780839 105780854 -43736183 - Lx2B LINE L1 -17 6983 6970 4 1392 185 65 32 0 chr6 105780854 105780885 -43736152 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 4 1392 5880 161 28 21 chr6 105780885 105781951 -43735086 - Lx2B LINE L1 -31 6969 5895 4 1392 330 339 81 71 chr6 105781983 105782193 -43734844 + B4A SINE B4 81 292 0 4 1392 303 71 0 0 chr6 105782229 105782271 -43734766 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1392 555 56 0 0 chr6 105782461 105782532 -43734505 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1392 1051 88 7 0 chr6 105782532 105782668 -43734369 - B1_Mus2 SINE Alu -10 137 1 4 1392 291 167 0 0 chr6 105783676 105783742 -43733295 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1392 618 261 56 0 chr6 105784423 105784565 -43732472 + B3A SINE B2 8 157 -41 4 1392 426 20 0 0 chr6 105784598 105784649 -43732388 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1392 23 33 0 0 chr6 105784685 105784715 -43732322 + AT_rich Low_complexity Low_complexity 1 30 0 4 1392 22 35 0 0 chr6 105784917 105784946 -43732091 + AT_rich Low_complexity Low_complexity 1 29 0 4 1392 2862 96 19 7 chr6 105784994 105785413 -43731624 + Lx3_Mus LINE L1 6586 7009 0 4 1392 24 0 0 0 chr6 105785589 105785613 -43731424 + AT_rich Low_complexity Low_complexity 1 24 0 4 1392 3182 135 56 2 chr6 105785760 105786281 -43730756 - Lx3A LINE L1 -5 6976 6428 4 1392 4712 233 66 18 chr6 105786759 105787864 -43729173 + Lx6 LINE L1 6303 7460 0 4 1392 22 56 0 0 chr6 105788961 105788997 -43728040 + AT_rich Low_complexity Low_complexity 1 36 0 4 1392 427 314 0 0 chr6 105789007 105789109 -43727928 - B1_Mur2 SINE Alu -47 102 1 4 1392 315 302 33 8 chr6 105789131 105789251 -43727786 + B4A SINE B4 3 125 -167 4 1392 315 0 0 0 chr6 105790992 105791027 -43726010 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1392 22 0 0 0 chr6 105791181 105791203 -43725834 + AT_rich Low_complexity Low_complexity 1 22 0 4 1392 261 268 48 24 chr6 105791313 105791397 -43725640 - Lx5 LINE L1 -364 6686 6601 4 1392 1065 248 125 12 chr6 105791397 105791724 -43725313 + Lx5 LINE L1 6684 7047 -3 4 1392 226 316 12 73 chr6 105791754 105791836 -43725201 + B4A SINE B4 155 231 -61 4 1392 883 268 67 12 chr6 105792225 105792554 -43724483 - L1_Mur3 LINE L1 -1748 4132 3786 4 1392 27 29 0 0 chr6 105792569 105792603 -43724434 + AT_rich Low_complexity Low_complexity 1 34 0 4 1392 279 0 0 0 chr6 105793210 105793241 -43723796 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1392 227 0 91 0 chr6 105794008 105794041 -43722996 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 4 1392 2676 47 6 0 chr6 105794181 105794519 -43722518 + L1Md_F2 LINE L1 5247 5586 -297 4 1392 7653 59 2 14 chr6 105794520 105795517 -43721520 + L1Md_F2 LINE L1 5588 6572 -10 4 1392 25 51 0 0 chr6 105796132 105796171 -43720866 + AT_rich Low_complexity Low_complexity 1 39 0 4 1392 549 0 0 0 chr6 105796193 105796254 -43720783 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1392 314 210 66 16 chr6 105796487 105796608 -43720429 + (TCTA)n Simple_repeat Simple_repeat 2 128 0 4 1392 502 41 27 0 chr6 105796665 105796738 -43720299 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 4 1392 367 319 80 22 chr6 105799081 105799219 -43717818 - RSINE1 SINE B4 -10 155 10 4 1392 22 56 0 0 chr6 105799727 105799763 -43717274 + AT_rich Low_complexity Low_complexity 1 36 0 4 1392 3058 55 0 0 chr6 105800050 105800434 -43716603 - L1Md_F2 LINE L1 -12 6570 6187 4 1392 934 251 62 25 chr6 105800555 105800877 -43716160 - L1_Rod LINE L1 -1524 4323 3990 4 1392 256 274 71 0 chr6 105801036 105801120 -43715917 + L1M1 LINE L1 5791 5880 -423 4 1392 1095 131 0 0 chr6 105801180 105801417 -43715620 + (TG)n Simple_repeat Simple_repeat 1 237 0 4 1392 232 186 0 0 chr6 105801660 105801703 -43715334 - L1M2 LINE L1 -865 5278 5236 4 1392 209 77 51 0 chr6 105801885 105801924 -43715113 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 4 1392 21 36 0 0 chr6 105802058 105802086 -43714951 + AT_rich Low_complexity Low_complexity 1 28 0 4 1392 420 20 0 0 chr6 105802556 105802605 -43714432 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 4 1392 476 349 42 37 chr6 105802819 105803036 -43714001 + B4A SINE B4 1 218 -74 4 1392 785 150 0 7 chr6 105804609 105804757 -43712280 + (TA)n Simple_repeat Simple_repeat 2 148 0 4 1392 486 0 0 0 chr6 105805759 105805813 -43711224 + (TTA)n Simple_repeat Simple_repeat 2 55 0 4 1392 1178 68 0 0 chr6 105805813 105805959 -43711078 - B1_Mus1 SINE Alu -2 146 1 4 1392 252 0 0 0 chr6 105807104 105807132 -43709905 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1392 423 0 0 0 chr6 105807345 105807392 -43709645 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1392 310 290 36 27 chr6 105808638 105808748 -43708289 + RSINE1 SINE B4 54 164 -1 4 1392 21 0 0 0 chr6 105808759 105808780 -43708257 + AT_rich Low_complexity Low_complexity 1 21 0 4 1392 381 297 119 26 chr6 105809522 105809833 -43707204 + L1MB7 LINE L1 5651 5990 -194 4 1392 189 94 0 0 chr6 105810218 105810250 -43706787 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1392 609 96 0 0 chr6 105810666 105810760 -43706277 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 4 1392 4514 131 26 31 chr6 105810760 105811570 -43705467 - RMER17D2 LTR ERVK -1 808 3 4 1392 584 27 14 0 chr6 105811571 105811645 -43705392 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 4 1392 641 244 6 0 chr6 105812479 105812655 -43704382 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 4 1392 195 129 0 0 chr6 105812655 105812686 -43704351 + (CCTA)n Simple_repeat Simple_repeat 1 31 0 4 1392 314 195 0 13 chr6 105812703 105812781 -43704256 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1392 1132 88 0 0 chr6 105813349 105813497 -43703540 + B1_Mus1 SINE Alu 1 148 0 4 1392 441 122 0 0 chr6 105813497 105813571 -43703466 + (A)n Simple_repeat Simple_repeat 1 74 0 4 1392 22 0 0 0 chr6 105814063 105814085 -43702952 + AT_rich Low_complexity Low_complexity 1 22 0 4 1392 743 99 4 46 chr6 105814682 105814804 -43702233 - Lx2 LINE L1 -449 6527 6407 4 1392 195 42 0 0 chr6 105815642 105815666 -43701371 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1392 21 36 0 0 chr6 105816078 105816106 -43700931 + AT_rich Low_complexity Low_complexity 1 28 0 4 1392 411 193 0 0 chr6 105816261 105816349 -43700688 + (CATA)n Simple_repeat Simple_repeat 4 91 0 4 1392 513 0 0 0 chr6 105817366 105817423 -43699614 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1392 366 222 0 40 chr6 105817712 105817787 -43699250 - RSINE1 SINE B4 -61 104 33 4 1392 1084 271 6 75 chr6 105820397 105820728 -43696309 - MTE2b LTR MaLR -66 313 6 4 1392 288 303 33 21 chr6 105820767 105820965 -43696072 - L1M5 LINE L1 -576 5588 5389 4 1392 413 19 0 18 chr6 105821529 105821584 -43695453 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1392 343 322 88 14 chr6 105821777 105821925 -43695112 - MLT1H LTR MaLR -316 233 75 4 1392 278 292 11 68 chr6 105822027 105822125 -43694912 + ORR1D2 LTR MaLR 1 93 -266 4 1392 1155 86 5 88 chr6 105822125 105822223 -43694814 + L1_Mus2 LINE L1 6375 6472 -94 4 1392 6918 88 59 4 chr6 105822223 105823202 -43693835 + RLTR13D4 LTR ERVK 1 1033 0 4 1392 1155 86 5 88 chr6 105823202 105823308 -43693729 + L1_Mus2 LINE L1 6473 6562 -4 4 1392 207 100 0 0 chr6 105823310 105823340 -43693697 + (GAA)n Simple_repeat Simple_repeat 2 31 0 4 1392 4604 79 21 2 chr6 105823396 105824005 -43693032 + L1_Mus3 LINE L1 6011 6631 -7 4 1392 499 260 117 20 chr6 105824030 105824226 -43692811 + ORR1D2 LTR MaLR 156 370 0 4 1392 718 216 186 21 chr6 105824658 105824852 -43692185 + URR1A DNA MER1_type 1 226 0 4 1392 402 100 0 0 chr6 105825948 105826008 -43691029 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 1392 615 62 0 0 chr6 105826008 105826088 -43690949 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1392 1353 242 20 3 chr6 105826159 105826461 -43690576 - ORR1B2 LTR MaLR -60 307 1 4 1392 1235 7 0 7 chr6 105826473 105826618 -43690419 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 4 1392 315 0 0 0 chr6 105826633 105826668 -43690369 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1392 566 259 44 6 chr6 105826677 105826836 -43690201 - Lx7 LINE L1 -25 7671 7507 4 1392 21 57 0 0 chr6 105826985 105827020 -43690017 + AT_rich Low_complexity Low_complexity 1 35 0 4 1392 961 254 129 24 chr6 105827704 105828083 -43688954 + MTD LTR MaLR 1 419 0 4 1392 380 177 13 0 chr6 105828361 105828440 -43688597 - Lx3C LINE L1 0 6976 6897 4 1392 580 283 133 6 chr6 105828658 105828839 -43688198 - B3 SINE B2 -8 208 5 4 1392 23 33 0 0 chr6 105829434 105829464 -43687573 + AT_rich Low_complexity Low_complexity 1 30 0 4 1392 25 31 0 0 chr6 105830217 105830249 -43686788 + AT_rich Low_complexity Low_complexity 1 32 0 4 1392 315 238 27 82 chr6 105831324 105831434 -43685603 - L1M4b LINE L1 -5012 2322 2219 4 1392 195 42 0 0 chr6 105831445 105831469 -43685568 + (TTTTTA)n Simple_repeat Simple_repeat 5 28 0 4 1392 3098 29 16 3 chr6 105831479 105831859 -43685178 - L1Md_F3 LINE L1 -2 6582 6198 4 1392 480 331 39 35 chr6 105832359 105832613 -43684424 - Lx8 LINE L1 -439 7034 6780 4 1392 388 295 169 26 chr6 105832776 105833089 -43683948 - L1M4 LINE L1 -3128 3018 2661 4 1392 963 113 0 14 chr6 105833092 105833235 -43683802 - B1_Mus1 SINE Alu -3 145 5 4 1392 22 56 0 0 chr6 105833428 105833464 -43683573 + AT_rich Low_complexity Low_complexity 1 36 0 4 1392 437 286 28 85 chr6 105833516 105833799 -43683238 - L1M4 LINE L1 -3691 2455 2189 4 1392 26 50 0 0 chr6 105834079 105834119 -43682918 + AT_rich Low_complexity Low_complexity 1 40 0 4 1392 219 167 0 0 chr6 105834276 105834318 -43682719 + (TTA)n Simple_repeat Simple_repeat 2 43 0 4 1392 327 104 0 0 chr6 105834648 105834696 -43682341 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1392 198 0 0 0 chr6 105835152 105835174 -43681863 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5 1392 25201 153 22 19 chr6 105835212 105841311 -43675726 + L1_Mus3 LINE L1 498 6633 -5 5 1392 25 0 0 0 chr6 105842737 105842762 -43674275 + AT_rich Low_complexity Low_complexity 1 25 0 5 1392 23 68 0 0 chr6 105843460 105843504 -43673533 + AT_rich Low_complexity Low_complexity 1 44 0 5 1392 474 328 137 62 chr6 105843515 105843837 -43673200 + ORR1E LTR MaLR 9 354 -5 5 1392 31 44 0 0 chr6 105844372 105844417 -43672620 + AT_rich Low_complexity Low_complexity 1 45 0 5 1392 1817 146 9 61 chr6 105844628 105844971 -43672066 - ORR1A2 LTR MaLR -2 325 1 5 1392 207 100 0 0 chr6 105845100 105845130 -43671907 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1392 1096 58 0 0 chr6 105845133 105845272 -43671765 - B1_Mus2 SINE Alu -6 141 3 5 1392 276 77 0 0 chr6 105845293 105845332 -43671705 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1392 587 314 11 11 chr6 105845547 105845724 -43671313 + ID_B1 SINE B4 12 188 -36 5 1392 210 143 0 0 chr6 105846176 105846211 -43670826 + (CGA)n Simple_repeat Simple_repeat 3 37 0 5 1392 2709 222 28 35 chr6 105846326 105847046 -43669991 - L1_Mur3 LINE L1 -1 5879 5165 5 1392 254 240 13 0 chr6 105847046 105847121 -43669916 + Lx6 LINE L1 7375 7450 -10 5 1392 241 381 12 0 chr6 105847406 105847490 -43669547 - ID_B1 SINE B4 -49 175 91 5 1392 23 33 0 0 chr6 105847783 105847813 -43669224 + AT_rich Low_complexity Low_complexity 1 30 0 5 1392 282 160 0 0 chr6 105848586 105848636 -43668401 - BC1_Mm scRNA scRNA -98 54 5 5 1392 473 318 61 58 chr6 105850297 105850574 -43666463 - B4A SINE B4 -14 278 1 5 1392 26 30 0 0 chr6 105851349 105851382 -43665655 + AT_rich Low_complexity Low_complexity 1 33 0 5 1392 23 33 0 0 chr6 105851464 105851494 -43665543 + AT_rich Low_complexity Low_complexity 1 30 0 5 1392 358 23 0 0 chr6 105851582 105851625 -43665412 - L1_Mus2 LINE L1 -641 5925 5883 5 1392 374 347 8 8 chr6 105851881 105852000 -43665037 - PB1 SINE Alu -3 124 6 5 1392 483 107 0 0 chr6 105852000 105852075 -43664962 + (TCC)n Simple_repeat Simple_repeat 1 75 0 5 1392 1054 215 85 0 chr6 105852425 105852672 -43664365 + Lx5 LINE L1 6778 7045 -5 5 1392 2581 79 13 47 chr6 105853225 105853610 -43663427 + L1Md_F2 LINE L1 6211 6582 0 5 1392 237 282 13 13 chr6 105853900 105853979 -43663058 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1392 29 47 0 0 chr6 105854067 105854110 -43662927 + AT_rich Low_complexity Low_complexity 1 43 0 5 1392 3005 39 0 0 chr6 105854723 105855082 -43661955 - L1Md_A LINE L1 -419 6163 5805 5 1392 3657 30 0 0 chr6 105855082 105855510 -43661527 + L1Md_T LINE L1 6153 6580 -2 5 1392 221 0 35 0 chr6 105855550 105855579 -43661458 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1392 651 37 0 0 chr6 105855785 105855867 -43661170 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 1392 181 295 77 0 chr6 105856002 105856080 -43660957 + L4 LINE RTE 1696 1779 -250 5 1392 351 0 0 0 chr6 105856242 105856281 -43660756 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1392 1088 54 0 52 chr6 105857010 105857165 -43659872 + B1_Mus1 SINE Alu 2 148 0 5 1392 243 88 0 0 chr6 105857165 105857199 -43659838 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1392 307 348 37 18 chr6 105857551 105857715 -43659322 + Charlie1 DNA MER1_type 7 173 -2608 5 1392 588 273 172 12 chr6 105857969 105858213 -43658824 - RMER5 LTR ERV1 -26 508 226 5 1392 361 300 48 48 chr6 105858650 105858797 -43658240 - B1_Mus2 SINE Alu 0 147 1 5 1392 252 297 31 0 chr6 105859364 105859428 -43657609 + B1F SINE Alu 9 74 -75 5 1392 675 128 0 0 chr6 105859433 105859542 -43657495 + (GA)n Simple_repeat Simple_repeat 2 110 0 5 1392 252 183 296 0 chr6 105859567 105859638 -43657399 - URR1B DNA MER1_type 0 225 134 5 1392 201 279 28 42 chr6 105859698 105859769 -43657268 + L3 LINE CR1 716 785 -3704 5 1392 288 0 0 0 chr6 105860733 105860765 -43656272 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1392 27 62 0 0 chr6 105860824 105860872 -43656165 + AT_rich Low_complexity Low_complexity 1 48 0 5 1392 1046 314 18 66 chr6 105861359 105861754 -43655283 - MTE2a LTR MaLR -15 404 31 5 1392 3476 118 0 2 chr6 105861761 105862269 -43654768 + Lx3A LINE L1 6470 6976 -5 5 1392 299 77 39 0 chr6 105862302 105862354 -43654683 - L1_Mur3 LINE L1 -1545 4335 4282 5 1392 194 0 39 0 chr6 105862362 105862388 -43654649 + (TTA)n Simple_repeat Simple_repeat 1 27 0 5 1392 198 0 0 0 chr6 105862386 105862408 -43654629 + (TAG)n Simple_repeat Simple_repeat 1 22 0 5 1392 923 189 193 0 chr6 105862408 105862667 -43654370 - L1_Mur3 LINE L1 -1593 4287 3979 5 1392 253 284 106 19 chr6 105862667 105862771 -43654266 - RMER5 LTR ERV1 -169 365 253 5 1392 24 0 0 0 chr6 105862776 105862800 -43654237 + AT_rich Low_complexity Low_complexity 1 24 0 5 1392 333 0 0 0 chr6 105864162 105864199 -43652838 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1392 2131 182 16 8 chr6 105865871 105866252 -43650785 - ORR1B1 LTR MaLR -6 388 5 5 1392 552 135 18 18 chr6 105866331 105866444 -43650593 - Lx LINE L1 -6 6648 6536 5 1392 540 30 0 0 chr6 105866465 105866531 -43650506 + (GA)n Simple_repeat Simple_repeat 2 67 0 5 1392 506 326 26 73 chr6 105866950 105867006 -43650031 - ID_B1 SINE B4 0 224 172 5 1392 3284 43 2 28 chr6 105867006 105867436 -43649601 - L1Md_F3 LINE L1 0 6584 6166 5 1392 506 326 26 73 chr6 105867436 105867611 -43649426 - ID_B1 SINE B4 -53 171 4 5 1392 1336 217 105 147 chr6 105867893 105868644 -43648393 - RMER6D LTR ERVK 0 720 1 5 1392 183 265 0 39 chr6 105869071 105869122 -43647915 - L2c LINE L2 -26 3361 3313 5 1392 574 315 135 7 chr6 105869450 105869662 -43647375 + B4 SINE B4 5 246 -46 5 1392 186 43 0 0 chr6 105869664 105869687 -43647350 + (GGA)n Simple_repeat Simple_repeat 3 25 0 5 1392 250 394 0 0 chr6 105869689 105869760 -43647277 + B4 SINE B4 222 292 0 5 1392 387 56 0 0 chr6 105869913 105869967 -43647070 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1392 488 354 28 41 chr6 105870646 105870864 -43646173 - ID_B1 SINE B4 -4 220 6 5 1392 255 31 0 0 chr6 105871079 105871111 -43645926 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5 1392 8846 52 1 0 chr6 105871124 105872912 -43644125 - L1Md_F2 LINE L1 -14 6568 4779 5 1392 453 19 0 0 chr6 105872967 105873021 -43644016 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1392 401 148 0 33 chr6 105873640 105873731 -43643306 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1392 21 0 0 0 chr6 105874447 105874468 -43642569 + AT_rich Low_complexity Low_complexity 1 21 0 5 1392 397 301 80 39 chr6 105875881 105876219 -43640818 + L1MB8 LINE L1 5806 6157 -21 5 1392 1964 261 66 23 chr6 105877080 105877610 -43639427 - Lx5 LINE L1 -9 7041 6489 5 1392 276 77 0 0 chr6 105878196 105878235 -43638802 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1392 342 311 77 42 chr6 105878252 105878420 -43638617 - B3 SINE B2 -42 174 1 5 1392 22 35 0 0 chr6 105878579 105878608 -43638429 + AT_rich Low_complexity Low_complexity 1 29 0 5 1392 897 257 29 129 chr6 105878717 105879128 -43637909 - ORR1D2 LTR MaLR 0 370 1 5 1392 1936 207 40 10 chr6 105879180 105879581 -43637456 - MTC LTR MaLR -8 413 1 5 1392 658 227 18 47 chr6 105879799 105879970 -43637067 - B2_Mm2 SINE B2 -28 167 2 5 1392 864 0 0 0 chr6 105880316 105880412 -43636625 + (TTC)n Simple_repeat Simple_repeat 2 97 0 5 1392 3050 243 109 46 chr6 105880469 105881356 -43635681 + RMER12 LTR ERVK 1 934 -388 5 1392 468 0 0 0 chr6 105881356 105881408 -43635629 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 5 1392 3050 243 109 46 chr6 105881408 105881580 -43635457 + RMER12 LTR ERVK 935 1126 -196 5 1392 393 22 0 0 chr6 105881580 105881626 -43635411 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 5 1392 3050 243 109 46 chr6 105881626 105881683 -43635354 + RMER12 LTR ERVK 1127 1187 -135 5 1392 297 0 0 0 chr6 105882093 105882126 -43634911 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 5 1392 308 0 71 0 chr6 105882967 105883009 -43634028 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1392 681 13 0 0 chr6 105883118 105883196 -43633841 + (TC)n Simple_repeat Simple_repeat 2 79 0 5 1392 552 269 7 22 chr6 105883226 105883363 -43633674 - B1_Mus1 SINE Alu 0 149 7 5 1392 23 54 0 0 chr6 105883433 105883470 -43633567 + AT_rich Low_complexity Low_complexity 1 37 0 5 1392 330 316 0 0 chr6 105883479 105883558 -43633479 + ID4 SINE ID 5 83 0 5 1392 597 299 25 30 chr6 105883642 105883845 -43633192 - RMER15 LTR ERVL -69 506 305 5 1392 1262 196 132 89 chr6 105884261 105884641 -43632396 + RMER19B LTR ERVK 1 396 -506 5 1392 1449 149 93 36 chr6 105884635 105884914 -43632123 + RMER19B LTR ERVK 578 872 -30 5 1392 1962 125 44 13 chr6 105884914 105885229 -43631808 + Lx3_Mus LINE L1 6685 7009 0 5 1392 186 43 0 0 chr6 105885746 105885769 -43631268 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 1392 26 0 0 0 chr6 105885884 105885910 -43631127 + AT_rich Low_complexity Low_complexity 1 26 0 5 1392 516 232 176 18 chr6 105886088 105886360 -43630677 + Lx9 LINE L1 7330 7644 0 5 1392 1067 120 11 6 chr6 105886757 105886933 -43630104 + L1Md_F2 LINE L1 6405 6581 -1 5 1392 252 309 28 102 chr6 105886971 105887079 -43629958 + PB1D7 SINE Alu 21 120 0 5 1392 332 276 11 0 chr6 105887158 105887245 -43629792 + PB1D9 SINE Alu 33 120 0 5 1392 306 0 0 0 chr6 105887256 105887290 -43629747 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 1392 8033 60 1 0 chr6 105887376 105888394 -43628643 - L1Md_F2 LINE L1 -8 6574 5584 5 1392 333 0 0 0 chr6 105889051 105889088 -43627949 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1392 303 283 110 38 chr6 105889782 105890046 -43626991 + L1MA7 LINE L1 5996 6278 -13 5 1392 285 125 0 0 chr6 105891325 105891381 -43625656 + (TGGA)n Simple_repeat Simple_repeat 4 59 0 5 1392 320 364 90 58 chr6 105891833 105892145 -43624892 - ORR1D2 LTR MaLR -3 367 46 6 1392 883 287 77 36 chr6 105892150 105892486 -43624551 - ORR1E LTR MaLR -5 354 5 6 1392 187 266 61 37 chr6 105892607 105892689 -43624348 - L3 LINE CR1 -3293 1196 1113 6 1392 27 29 0 0 chr6 105892847 105892881 -43624156 + AT_rich Low_complexity Low_complexity 1 34 0 6 1392 575 325 35 0 chr6 105893054 105893254 -43623783 - B3 SINE B2 -6 210 4 6 1392 1124 112 0 11 chr6 105894477 105894658 -43622379 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 6 1392 213 39 0 0 chr6 105894668 105894694 -43622343 + (TTTCC)n Simple_repeat Simple_repeat 4 29 0 6 1392 842 340 79 41 chr6 105895327 105895586 -43621451 + Lx8 LINE L1 6807 7070 -403 6 1392 513 32 0 0 chr6 105895586 105895649 -43621388 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1392 842 340 79 41 chr6 105895649 105895896 -43621141 + Lx8 LINE L1 7071 7332 -141 6 1392 1462 128 0 4 chr6 105896002 105896230 -43620807 + Lx3_Mus LINE L1 6533 6759 -250 6 1392 278 351 0 0 chr6 105896403 105896477 -43620560 + PB1D10 SINE Alu 1 74 -43 6 1392 2147 274 68 47 chr6 105896559 105897321 -43619716 - RLTR40 LTR ERVK -39 778 1 6 1392 261 370 46 93 chr6 105897327 105897607 -43619430 + B4 SINE B4 26 292 0 6 1392 909 153 0 0 chr6 105897616 105897792 -43619245 + (CA)n Simple_repeat Simple_repeat 2 177 0 6 1392 533 240 0 11 chr6 105897803 105897984 -43619053 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 1392 2137 98 13 41 chr6 105899365 105899683 -43617354 - RLTR27 LTR ERVK 0 309 1 6 1392 4335 59 12 31 chr6 105899883 105900458 -43616579 + LTRIS2 LTR ERV1 1 564 0 6 1392 407 368 55 0 chr6 105900471 105900634 -43616403 + MER20 DNA MER1_type 24 195 -24 6 1392 253 260 12 49 chr6 105901211 105901292 -43615745 - MTEb LTR MaLR -6 373 296 6 1392 252 342 8 75 chr6 105901515 105901635 -43615402 - MLT1A1 LTR MaLR -296 112 1 6 1392 21 36 0 0 chr6 105902421 105902449 -43614588 + AT_rich Low_complexity Low_complexity 1 28 0 6 1392 2455 125 0 15 chr6 105903179 105903584 -43613453 + Lx LINE L1 6256 6654 0 6 21 41059 5 0 0 chr6 105904023 105910373 -43606664 - L1Md_A LINE L1 0 6582 232 6 1393 3546 63 0 5 chr6 105911680 105912129 -43604908 + L1_Mus1 LINE L1 6121 6567 0 6 1393 213 39 0 0 chr6 105912622 105912648 -43604389 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1393 1042 115 0 20 chr6 105912651 105912802 -43604235 - B1_Mus1 SINE Alu 0 148 1 6 1393 783 42 0 0 chr6 105913141 105913237 -43603800 - L1Md_F3 LINE L1 -435 6149 6054 6 1393 313 100 17 0 chr6 105913223 105913283 -43603754 + L1Md_F2 LINE L1 6520 6580 -2 6 1393 5231 164 61 4 chr6 105914850 105915835 -43601202 - Lx2 LINE L1 -1 6996 5956 6 1393 662 330 22 0 chr6 105916151 105916336 -43600701 - ID_B1 SINE B4 -32 192 4 6 1393 216 148 49 0 chr6 105917798 105917859 -43599178 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 6 1393 1417 293 24 5 chr6 105917868 105918249 -43598788 - MTD LTR MaLR -13 406 19 6 1393 219 289 0 0 chr6 105920444 105920496 -43596541 + CT-rich Low_complexity Low_complexity 1 52 0 6 1393 810 109 0 0 chr6 105920506 105920634 -43596403 + (TCCC)n Simple_repeat Simple_repeat 4 131 0 6 1393 496 291 22 7 chr6 105921840 105921975 -43595062 + ID_B1 SINE B4 54 190 -34 6 1393 723 281 33 5 chr6 105922752 105922963 -43594074 + ID_B1 SINE B4 3 219 -5 6 1393 321 293 127 14 chr6 105923006 105923148 -43593889 + HAL1-3A_ME LINE L1 2284 2441 -417 6 1393 508 313 7 26 chr6 105923152 105923306 -43593731 + B3A SINE B2 1 151 -47 6 1393 354 23 0 0 chr6 105923321 105923364 -43593673 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1393 519 17 0 0 chr6 105923364 105923423 -43593614 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 1393 853 224 11 0 chr6 105923546 105923720 -43593317 - ORR1B2 LTR MaLR -191 176 1 6 1393 465 19 0 0 chr6 105924385 105924439 -43592598 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1393 279 270 27 0 chr6 105925538 105925612 -43591425 + ID2 SINE ID 2 77 -6 6 1393 1118 281 55 21 chr6 105926443 105926811 -43590226 - MTD LTR MaLR 0 419 19 6 1393 193 297 120 11 chr6 105927050 105927181 -43589856 + MIRc SINE MIR 106 241 -27 6 1393 22 56 0 0 chr6 105927396 105927432 -43589605 + AT_rich Low_complexity Low_complexity 1 36 0 6 1393 21 0 0 0 chr6 105928734 105928755 -43588282 + AT_rich Low_complexity Low_complexity 1 21 0 6 1393 234 128 0 0 chr6 105929449 105929488 -43587549 + (TATG)n Simple_repeat Simple_repeat 2 40 0 6 1393 494 165 10 0 chr6 105930484 105930587 -43586450 + CT-rich Low_complexity Low_complexity 3 106 0 6 1393 393 289 46 37 chr6 105930680 105930896 -43586141 - Lx8 LINE L1 -1576 5897 5677 6 1393 259 318 110 19 chr6 105930930 105931084 -43585953 - MLT1B LTR MaLR -217 173 6 6 1393 236 215 92 0 chr6 105932450 105932515 -43584522 + BC1_Mm scRNA scRNA 37 107 -45 6 1393 23 33 0 0 chr6 105933426 105933456 -43583581 + AT_rich Low_complexity Low_complexity 1 30 0 6 1393 234 143 0 0 chr6 105933991 105934040 -43582997 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1393 28 71 0 0 chr6 105934435 105934491 -43582546 + AT_rich Low_complexity Low_complexity 1 56 0 6 1393 429 20 0 0 chr6 105934578 105934628 -43582409 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1393 633 105 0 0 chr6 105936133 105936228 -43580809 + (TTTA)n Simple_repeat Simple_repeat 2 96 0 6 1393 232 262 24 36 chr6 105937371 105937454 -43579583 - Lx8 LINE L1 -9 7464 7383 6 1393 270 207 0 0 chr6 105937490 105937548 -43579489 + (TTA)n Simple_repeat Simple_repeat 1 58 0 6 1393 1322 274 8 109 chr6 105937561 105937755 -43579282 - Lx8 LINE L1 -154 7319 7140 6 1393 6152 84 37 8 chr6 105937755 105938624 -43578413 - L1_Mus4 LINE L1 -5 6631 5738 6 1393 1322 274 8 109 chr6 105938624 105938908 -43578129 - Lx8 LINE L1 -334 7139 6889 6 1393 22 0 0 0 chr6 105939844 105939866 -43577171 + AT_rich Low_complexity Low_complexity 1 22 0 6 1393 681 182 34 20 chr6 105941360 105941506 -43575531 - RMER1B Other Other -25 1041 894 6 1393 1200 183 71 30 chr6 105941507 105941770 -43575267 - RMER1B Other Other -234 832 580 6 1393 2214 107 3 0 chr6 105941779 105942098 -43574939 + ORR1A2 LTR MaLR 1 320 -7 6 1393 1757 123 93 3 chr6 105942102 105942404 -43574633 + ORR1A2-int LTR MaLR 2 330 -768 6 1393 2810 92 0 2 chr6 105942401 105942794 -43574243 + MTB LTR MaLR 9 400 0 6 1393 873 277 17 55 chr6 105942797 105943127 -43573910 - RMER1B Other Other -792 550 60 6 1393 274 299 12 38 chr6 105943127 105943207 -43573830 - RMER1B Other Other -978 88 11 6 1393 235 295 87 39 chr6 105944552 105944679 -43572358 + MIRb SINE MIR 117 249 -19 6 1393 4278 60 7 5 chr6 105945301 105945858 -43571179 - L1Md_F3 LINE L1 0 6584 6027 6 1393 285 274 38 2 chr6 105947518 105947632 -43569405 + L1MC4a LINE L1 6828 6947 -1095 6 1393 558 110 25 8 chr6 105947820 105947939 -43569098 + (TAGA)n Simple_repeat Simple_repeat 3 123 0 6 1393 29 70 0 0 chr6 105948452 105948509 -43568528 + AT_rich Low_complexity Low_complexity 1 57 0 6 1393 2771 208 57 5 chr6 105948512 105949073 -43567964 - Lx5 LINE L1 -7 7043 6454 6 1393 980 50 0 48 chr6 105949074 105949220 -43567817 + L1Md_F2 LINE L1 6441 6579 -3 6 1393 633 204 0 0 chr6 105949462 105949619 -43567418 + (TG)n Simple_repeat Simple_repeat 2 158 0 6 1393 326 336 21 35 chr6 105949793 105949938 -43567099 + RSINE1 SINE B4 17 159 -6 6 1393 23 0 0 0 chr6 105949995 105950018 -43567019 + AT_rich Low_complexity Low_complexity 1 23 0 6 1393 297 51 0 0 chr6 105951691 105951730 -43565307 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1393 24 0 0 0 chr6 105951984 105952008 -43565029 + AT_rich Low_complexity Low_complexity 1 24 0 6 1393 242 186 129 0 chr6 105952255 105952325 -43564712 + L1_Rod LINE L1 5331 5409 -438 6 1393 341 175 48 0 chr6 105952346 105952406 -43564631 + B1_Mur3 SINE Alu 1 63 -86 6 1393 1125 232 51 56 chr6 105952406 105952762 -43564275 - BGLII_B LTR ERVK 0 441 88 6 1393 467 149 11 75 chr6 105952747 105952841 -43564196 + B1_Mur3 SINE Alu 56 143 -6 6 1393 621 231 0 0 chr6 105952841 105953014 -43564023 + GA-rich Low_complexity Low_complexity 2 174 0 6 1393 742 319 18 53 chr6 105953041 105953475 -43563562 + L1MA4A LINE L1 5513 5931 -372 6 1393 725 347 43 7 chr6 105955135 105955411 -43561626 + B4A SINE B4 1 286 -6 6 1393 638 45 22 0 chr6 105955416 105955505 -43561532 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 6 1393 336 152 0 0 chr6 105955505 105955571 -43561466 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1393 319 305 45 74 chr6 105955597 105955799 -43561238 - L1ME3 LINE L1 -51 6111 5916 6 1393 552 327 0 51 chr6 105955943 105956101 -43560936 - RSINE1 SINE B4 -2 163 14 6 1393 657 82 0 0 chr6 105957313 105957410 -43559627 + (CA)n Simple_repeat Simple_repeat 1 97 0 6 1393 647 46 11 0 chr6 105957410 105957497 -43559540 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 1393 250 182 0 0 chr6 105957871 105957915 -43559122 + A-rich Low_complexity Low_complexity 1 44 0 6 1393 370 346 31 43 chr6 105957926 105958089 -43558948 + RSINE1 SINE B4 3 163 -2 6 1393 375 23 0 0 chr6 105958094 105958138 -43558899 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1393 22 0 0 0 chr6 105958138 105958160 -43558877 + AT_rich Low_complexity Low_complexity 1 22 0 6 1393 221 322 0 22 chr6 105958777 105958866 -43558171 + (TATG)n Simple_repeat Simple_repeat 2 88 0 6 1393 526 283 27 65 chr6 105958887 105959072 -43557965 - B4 SINE B4 -60 232 55 6 1393 309 303 10 0 chr6 105959108 105959207 -43557830 + L1MC1 LINE L1 5860 5959 -1826 6 1393 1154 253 111 6 chr6 105959212 105959554 -43557483 - MTD LTR MaLR -14 405 28 6 1393 329 319 30 50 chr6 105959691 105959892 -43557145 + L1MC1 LINE L1 6110 6306 -27 6 1393 1330 175 290 44 chr6 105960069 105960521 -43556516 - RLTR20B2 LTR ERVK 0 563 1 6 1393 252 291 22 55 chr6 105960876 105960967 -43556070 - MLT2B5 LTR ERVL -293 308 221 6 1393 1786 279 26 9 chr6 105960999 105961504 -43555533 + Lx6 LINE L1 6561 7431 -29 6 1393 234 0 0 0 chr6 105961505 105961531 -43555506 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 6 1393 321 240 38 57 chr6 105961601 105961707 -43555330 + B4A SINE B4 1 104 -188 7 1393 218 275 50 0 chr6 105961846 105961926 -43555111 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 1393 351 0 0 0 chr6 105962375 105962414 -43554623 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 1393 536 254 8 8 chr6 105963029 105963156 -43553881 - MTEa LTR MaLR -10 369 243 7 1393 253 327 31 43 chr6 105963788 105963960 -43553077 - MIR SINE MIR -19 249 64 7 1393 580 216 13 0 chr6 105965588 105965741 -43551296 + (TA)n Simple_repeat Simple_repeat 1 155 0 7 1393 25 0 0 0 chr6 105965741 105965766 -43551271 + AT_rich Low_complexity Low_complexity 1 25 0 7 1393 577 313 7 0 chr6 105965801 105965948 -43551089 + B1_Mur1 SINE Alu 2 149 0 7 1393 210 312 62 0 chr6 105966040 105966104 -43550933 - ID4_ SINE ID -10 73 6 7 1393 23 0 0 0 chr6 105967101 105967124 -43549913 + AT_rich Low_complexity Low_complexity 1 23 0 7 1393 6843 62 23 0 chr6 105967171 105968046 -43548991 - L1Md_F2 LINE L1 -93 5790 4896 7 1393 5679 65 21 14 chr6 105968046 105968815 -43548222 + L1Md_F2 LINE L1 5808 6581 -1 7 1393 227 73 71 29 chr6 105968952 105969022 -43548015 + (TA)n Simple_repeat Simple_repeat 2 74 0 7 1393 657 268 13 0 chr6 105969279 105969436 -43547601 + B3 SINE B2 54 212 -4 7 1393 7206 33 26 0 chr6 105969719 105970590 -43546447 + L1Md_T LINE L1 5689 6582 0 7 1393 1403 290 50 33 chr6 105970674 105971293 -43545744 - Lx7 LINE L1 -492 6981 6334 7 1393 386 338 37 0 chr6 105971890 105972026 -43545011 - MER105 DNA DNA 0 204 64 7 1393 207 114 0 0 chr6 105972349 105972384 -43544653 + (AATTG)n Simple_repeat Simple_repeat 1 35 0 7 1393 522 0 0 0 chr6 105972984 105973042 -43543995 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 7 1393 1275 89 0 0 chr6 105973043 105973222 -43543815 + (CCTA)n Simple_repeat Simple_repeat 1 179 0 7 1393 455 109 58 8 chr6 105973222 105973342 -43543695 + (TCTA)n Simple_repeat Simple_repeat 3 128 0 7 1393 205 143 0 39 chr6 105973362 105973413 -43543624 + (TTA)n Simple_repeat Simple_repeat 3 51 0 7 1393 308 386 7 7 chr6 105973780 105973921 -43543116 + RSINE1 SINE B4 3 143 -22 7 1393 291 157 0 0 chr6 105974057 105974108 -43542929 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1393 1209 271 22 8 chr6 105974109 105974470 -43542567 - ORR1D2 LTR MaLR 0 370 5 7 1393 419 323 16 0 chr6 105974565 105974692 -43542345 - B4 SINE B4 -46 246 118 7 1393 23 86 0 0 chr6 105974908 105974966 -43542071 + AT_rich Low_complexity Low_complexity 1 58 0 7 1393 246 105 0 0 chr6 105975192 105975230 -43541807 + (TAA)n Simple_repeat Simple_repeat 2 39 0 7 1393 235 226 0 31 chr6 105975842 105975906 -43541131 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 7 1393 247 224 14 5 chr6 105976422 105976493 -43540544 + MER5A DNA MER1_type 63 135 -54 7 1393 1564 190 24 7 chr6 105977429 105977721 -43539316 + RLTR15 LTR ERVK 56 352 -7 7 1393 533 76 13 0 chr6 105977986 105978065 -43538972 + (TA)n Simple_repeat Simple_repeat 2 81 0 7 1393 644 377 37 5 chr6 105979331 105979736 -43537301 + Lx8 LINE L1 6835 7252 -221 7 1393 23 33 0 0 chr6 105979768 105979798 -43537239 + AT_rich Low_complexity Low_complexity 1 30 0 7 1393 268 309 83 0 chr6 105981229 105981313 -43535724 + PB1D10 SINE Alu 11 101 -16 7 1393 201 94 0 0 chr6 105981944 105981976 -43535061 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 7 1393 26 30 0 0 chr6 105982706 105982739 -43534298 + AT_rich Low_complexity Low_complexity 1 33 0 7 1393 231 60 39 20 chr6 105983285 105983336 -43533701 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 7 1393 1431 125 51 72 chr6 105983383 105983675 -43533362 - Lx3B LINE L1 0 6973 6688 7 1393 2646 150 29 5 chr6 105984735 105985183 -43531854 + Lx4A LINE L1 6599 7057 -1 7 1393 1539 224 101 3 chr6 105985353 105985729 -43531308 - MTC LTR MaLR -8 413 1 7 1393 963 212 53 0 chr6 105986187 105986376 -43530661 - B3 SINE B2 -13 203 5 7 1393 249 128 0 0 chr6 105986668 105986715 -43530322 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 7 1393 234 295 51 13 chr6 105986786 105986865 -43530172 - ID4_ SINE ID 0 83 2 7 1393 189 94 0 0 chr6 105987375 105987407 -43529630 + (CAAAT)n Simple_repeat Simple_repeat 2 33 0 7 1393 2395 276 24 128 chr6 105987526 105988690 -43528347 + RMER1B Other Other 11 1053 -13 7 1393 829 223 67 15 chr6 105989433 105989702 -43527335 - Lx9 LINE L1 -1 7643 7361 7 1393 1230 322 32 16 chr6 105990100 105990593 -43526444 - Lx6 LINE L1 -2 7458 6958 7 1393 419 167 11 0 chr6 105990818 105990908 -43526129 + CT-rich Low_complexity Low_complexity 2 92 0 7 1393 2095 25 0 0 chr6 105991477 105991721 -43525316 + L1Md_F2 LINE L1 6327 6570 -12 7 1393 666 345 44 28 chr6 105991894 105992436 -43524601 + L1MA10 LINE L1 5777 6327 -7 7 1393 1763 104 11 0 chr6 105992404 105992679 -43524358 - L1_Mus2 LINE L1 -498 6156 5871 7 1393 3257 57 52 2 chr6 105992679 105993104 -43523933 + L1_Mus2 LINE L1 6121 6566 0 7 1393 477 0 0 0 chr6 105994013 105994066 -43522971 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1393 225 94 0 0 chr6 105995176 105995208 -43521829 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1393 30 0 0 0 chr6 105995238 105995268 -43521769 + AT_rich Low_complexity Low_complexity 1 30 0 7 1393 974 293 58 55 chr6 105996750 105997111 -43519926 - MTEb LTR MaLR -8 371 10 7 1393 267 31 0 0 chr6 105997258 105997290 -43519747 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 7 1393 485 225 16 55 chr6 105997299 105997426 -43519611 + B1_Mur4 SINE Alu 1 122 -28 7 1393 682 295 13 103 chr6 105999082 105999316 -43517721 + B3 SINE B2 2 214 -2 7 1393 1311 54 0 0 chr6 105999483 105999651 -43517386 + (TG)n Simple_repeat Simple_repeat 2 169 0 7 1393 503 41 27 0 chr6 106000157 106000230 -43516807 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 1 1393 1043 90 0 0 chr6 106000230 106000363 -43516674 - B1_Mm SINE Alu -13 134 2 2 1393 219 392 97 10 chr6 106000369 106000575 -43516462 - MIR SINE MIR -12 250 27 3 1393 243 0 0 0 chr6 106000634 106000661 -43516376 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1393 4272 66 0 2 chr6 106000805 106001350 -43515687 - L1Md_F2 LINE L1 -244 6338 5795 5 1393 313 198 0 21 chr6 106002325 106002418 -43514619 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1393 201 116 0 44 chr6 106004538 106004583 -43512454 + T-rich Low_complexity Low_complexity 2 44 0 7 1393 31 0 0 0 chr6 106005413 106005444 -43511593 + AT_rich Low_complexity Low_complexity 1 31 0 8 1393 1576 237 19 22 chr6 106005444 106005807 -43511230 - Lx5 LINE L1 0 7050 6689 9 1393 322 248 82 1 chr6 106006962 106007094 -43509943 + L1MA8 LINE L1 5816 5956 -335 1 1393 253 273 30 0 chr6 106007902 106007968 -43509069 + ID4_ SINE ID 2 69 -14 1 1393 569 164 27 9 chr6 106008124 106008235 -43508802 + Lx4A LINE L1 6668 6780 -278 1 1393 411 21 0 0 chr6 106008913 106008961 -43508076 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1393 384 40 0 0 chr6 106009318 106009368 -43507669 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1393 762 205 127 24 chr6 106010292 106010497 -43506540 + URR1A DNA MER1_type 1 226 0 1 1393 300 53 0 0 chr6 106010717 106010755 -43506282 + (CCTG)n Simple_repeat Simple_repeat 2 39 0 1 1393 558 133 0 0 chr6 106010764 106010877 -43506160 + (TC)n Simple_repeat Simple_repeat 2 114 0 1 1393 549 0 0 0 chr6 106012504 106012565 -43504472 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1393 21 0 0 0 chr6 106013022 106013043 -43503994 + AT_rich Low_complexity Low_complexity 1 21 0 1 1393 622 311 81 5 chr6 106013056 106013253 -43503784 + B3 SINE B2 5 216 0 2 1393 5650 164 71 16 chr6 106013702 106014786 -43502251 + Lx2B LINE L1 5829 6972 -28 2 1393 531 0 0 0 chr6 106014788 106014847 -43502190 + (TAA)n Simple_repeat Simple_repeat 2 60 0 2 1393 200 86 29 0 chr6 106016325 106016360 -43500677 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 2 1393 434 280 26 5 chr6 106016360 106016537 -43500500 - B4A SINE B4 -60 232 18 2 1393 182 227 13 0 chr6 106016537 106016612 -43500425 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 1393 1230 62 6 11 chr6 106016925 106017104 -43499933 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 2 1393 1388 147 9 4 chr6 106017247 106017479 -43499558 - Lx2 LINE L1 0 6997 6765 2 1393 2382 120 6 3 chr6 106017466 106017816 -43499221 - Lx2 LINE L1 -350 6647 6297 2 1393 802 183 12 34 chr6 106017816 106018020 -43499017 - RMER17A2 LTR ERVK -684 205 5 2 1393 421 207 54 0 chr6 106018023 106018134 -43498903 + Lx3A LINE L1 6860 6976 -5 2 1393 21 36 0 0 chr6 106018175 106018203 -43498834 + AT_rich Low_complexity Low_complexity 1 28 0 3 1393 562 300 187 59 chr6 106018470 106018941 -43498096 - MT2A LTR ERVL -2 531 1 3 1393 22 0 0 0 chr6 106019249 106019271 -43497766 + AT_rich Low_complexity Low_complexity 1 22 0 3 1393 962 157 0 6 chr6 106019380 106019559 -43497478 + GA-rich Low_complexity Low_complexity 2 179 0 3 1393 415 320 147 15 chr6 106020878 106021075 -43495962 + B4 SINE B4 2 224 -68 3 1393 446 96 0 14 chr6 106021099 106021173 -43495864 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 1393 311 286 47 13 chr6 106021262 106021411 -43495626 + L1MC4 LINE L1 6858 7011 -1031 3 1393 198 0 0 0 chr6 106022059 106022081 -43494956 + (TC)n Simple_repeat Simple_repeat 1 22 0 3 1393 752 282 17 6 chr6 106022106 106022281 -43494756 - B3A SINE B2 -16 182 6 3 1393 297 276 67 22 chr6 106023779 106023868 -43493169 - ORR1E LTR MaLR -11 348 256 3 1393 3470 28 0 0 chr6 106023916 106024312 -43492725 + MTA_Mm LTR MaLR 1 396 0 4 1393 210 37 0 0 chr6 106024922 106024949 -43492088 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 4 1393 22 0 0 0 chr6 106024970 106024992 -43492045 + AT_rich Low_complexity Low_complexity 1 22 0 4 1393 395 281 49 18 chr6 106025591 106025754 -43491283 - L1M2 LINE L1 -599 5643 5476 4 1393 28 29 0 0 chr6 106025818 106025853 -43491184 + AT_rich Low_complexity Low_complexity 1 35 0 4 1393 25 0 0 0 chr6 106026274 106026299 -43490738 + AT_rich Low_complexity Low_complexity 1 25 0 4 1393 244 283 9 57 chr6 106026354 106026459 -43490578 + RMER1C Other Other 1242 1341 -1 4 1393 626 296 118 22 chr6 106027000 106027362 -43489675 + L1ME1 LINE L1 5788 6178 -1 4 1393 583 271 91 10 chr6 106027485 106027694 -43489343 + L3 LINE CR1 3519 3744 -745 4 1393 21 0 0 0 chr6 106029191 106029212 -43487825 + AT_rich Low_complexity Low_complexity 1 21 0 4 1393 647 325 81 28 chr6 106029287 106029791 -43487246 + L1MC1 LINE L1 3656 4186 -1960 5 1393 4884 155 89 6 chr6 106029805 106030715 -43486322 + Lx2 LINE L1 6008 6993 -4 5 1393 986 104 0 7 chr6 106030715 106030870 -43486167 + (GAAA)n Simple_repeat Simple_repeat 2 155 0 5 1393 683 311 5 129 chr6 106030882 106031092 -43485945 + B3A SINE B2 9 192 -3 5 1393 431 219 49 4 chr6 106031233 106031381 -43485656 + L1MC1 LINE L1 4403 4554 -1592 5 1393 318 283 49 64 chr6 106031424 106031628 -43485409 + L1MC1 LINE L1 4822 5022 -1124 5 1393 478 260 107 20 chr6 106031707 106031788 -43485249 - RLTR20C LTR ERVK -12 539 461 5 1393 297 0 0 0 chr6 106031788 106031821 -43485216 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1393 931 201 69 104 chr6 106031821 106032200 -43484837 - RLTR20C LTR ERVK -91 460 1 5 1393 276 295 30 23 chr6 106032214 106032346 -43484691 + L1MC1 LINE L1 5105 5237 -909 5 1393 562 308 118 22 chr6 106032440 106033074 -43483963 + L1MC1 LINE L1 5577 6271 -62 5 1393 6495 94 13 3 chr6 106033203 106034121 -43482916 - L1_Mus4 LINE L1 -5 6631 5705 5 1393 3218 154 38 3 chr6 106034117 106034691 -43482346 + L1_Mus4 LINE L1 5094 5687 -196 5 1393 272 352 40 8 chr6 106035484 106035610 -43481427 - LTR87 LTR ERVL? -105 519 390 5 1393 594 282 154 5 chr6 106035617 106035838 -43481199 - MTEa LTR MaLR -113 266 13 5 1393 21 0 0 0 chr6 106035977 106035998 -43481039 + AT_rich Low_complexity Low_complexity 1 21 0 5 1394 1608 230 61 5 chr6 106037363 106037565 -43479472 + MTB_Mm LTR MaLR 1 225 -182 6 1394 432 0 0 0 chr6 106037565 106037613 -43479424 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1394 1608 230 61 5 chr6 106037613 106037786 -43479251 + MTB_Mm LTR MaLR 226 396 -11 6 1394 278 83 0 0 chr6 106037795 106037831 -43479206 - U2 snRNA snRNA -152 36 1 6 1394 230 328 0 0 chr6 106038389 106038453 -43478584 + CT-rich Low_complexity Low_complexity 4 67 0 6 1394 21 71 0 0 chr6 106038927 106038969 -43478068 + AT_rich Low_complexity Low_complexity 1 42 0 6 1394 249 386 123 7 chr6 106040123 106040269 -43476768 + RSINE1 SINE B4 3 165 0 6 1394 690 247 113 0 chr6 106040764 106040950 -43476087 + B3 SINE B2 2 208 -8 6 1394 8187 318 88 51 chr6 106041361 106041798 -43475239 - L1Md_F2 LINE L1 -5 7045 6567 6 1394 411 21 0 0 chr6 106041798 106041846 -43475191 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1394 8187 33 14 3 chr6 106041846 106042870 -43474167 - L1Md_F2 LINE L1 -15 6567 5531 6 1394 423 0 0 0 chr6 106044010 106044057 -43472980 + (TTA)n Simple_repeat Simple_repeat 2 48 0 6 1394 3492 204 80 0 chr6 106044057 106044729 -43472308 - Lx5 LINE L1 -13 7037 6312 7 1394 450 0 0 0 chr6 106045006 106045056 -43471981 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1394 417 103 0 0 chr6 106045056 106045123 -43471914 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1394 296 325 71 8 chr6 106046242 106046369 -43470668 + B1F SINE Alu 10 144 -5 7 1394 301 70 35 0 chr6 106047252 106047309 -43469728 + (CAAAAA)n Simple_repeat Simple_repeat 3 61 0 7 1394 404 398 48 30 chr6 106048518 106048787 -43468250 + B4A SINE B4 8 281 -11 7 1394 561 331 34 11 chr6 106048946 106049123 -43467914 + B4A SINE B4 17 197 -95 7 1394 3439 55 0 5 chr6 106049123 106049560 -43467477 + L1Md_T LINE L1 6147 6581 -1 7 1394 205 280 0 0 chr6 106049606 106049656 -43467381 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 7 1394 542 323 158 24 chr6 106050111 106050409 -43466628 - MLT2B2 LTR ERVL -172 343 6 7 1394 8078 48 6 0 chr6 106050974 106052442 -43464595 - L1Md_F2 LINE L1 0 6582 5110 8 1394 324 331 95 49 chr6 106052819 106053083 -43463954 - L1MD LINE L1 -603 5639 5364 8 1394 512 56 14 0 chr6 106053111 106053183 -43463854 + (TA)n Simple_repeat Simple_repeat 1 73 0 8 1394 256 325 36 0 chr6 106053273 106053467 -43463570 - L1MD LINE L1 -985 5161 4961 8 1394 240 263 13 0 chr6 106053596 106053672 -43463365 + L1MB7 LINE L1 6043 6119 -65 8 1394 432 271 84 6 chr6 106053727 106053905 -43463132 - L1MD LINE L1 -1276 4870 4679 8 1394 21 0 0 0 chr6 106053930 106053951 -43463086 + AT_rich Low_complexity Low_complexity 1 21 0 8 1394 572 355 25 45 chr6 106054637 106055082 -43461955 + Lx9 LINE L1 7027 7462 -182 8 1394 396 0 0 0 chr6 106055394 106055438 -43461599 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 8 1394 2513 119 0 3 chr6 106055438 106055807 -43461230 - Lx3A LINE L1 -13 6968 6601 8 1394 4617 124 11 1 chr6 106055814 106056509 -43460528 + Lx3A LINE L1 5920 6621 -360 8 1394 2117 293 37 15 chr6 106056777 106057380 -43459657 - Lx5 LINE L1 -13 7037 6450 8 1394 180 0 0 0 chr6 106057380 106057400 -43459637 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1394 1229 290 21 4 chr6 106057400 106057742 -43459295 - Lx5 LINE L1 -727 6733 6188 8 1394 285 98 0 0 chr6 106058112 106058153 -43458884 + (CAT)n Simple_repeat Simple_repeat 2 42 0 9 1394 401 367 37 54 chr6 106058232 106058529 -43458508 - MLT1D LTR MaLR -190 315 24 9 1394 376 288 103 23 chr6 106059523 106059697 -43457340 - MIRb SINE MIR -4 264 77 9 1394 991 83 0 22 chr6 106059866 106060002 -43457035 + B1_Mm SINE Alu 4 136 -11 9 1394 352 0 42 0 chr6 106060002 106060050 -43456987 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 9 1394 2886 96 2 7 chr6 106060435 106060843 -43456194 + L1_Mus2 LINE L1 6161 6566 0 9 1394 471 264 31 0 chr6 106061220 106061349 -43455688 + B1_Mur1 SINE Alu 1 133 -16 9 1394 522 31 0 0 chr6 106061739 106061803 -43455234 + (CA)n Simple_repeat Simple_repeat 2 65 0 9 1394 495 0 0 0 chr6 106062259 106062314 -43454723 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 9 1394 342 0 0 0 chr6 106062316 106062354 -43454683 + (ATATG)n Simple_repeat Simple_repeat 3 40 0 9 1394 239 135 0 0 chr6 106063276 106063313 -43453724 + L2b LINE L2 3338 3374 -1 1 1394 1173 320 112 67 chr6 106063679 106064679 -43452358 + Lx8 LINE L1 6258 7302 -171 1 1394 209 226 19 0 chr6 106065108 106065161 -43451876 + (CATA)n Simple_repeat Simple_repeat 3 56 0 1 1394 219 288 0 15 chr6 106065921 106065988 -43451049 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1394 246 333 0 0 chr6 106067402 106067456 -43449581 - PB1D7 SINE Alu -35 85 32 1 1394 1235 81 6 6 chr6 106067922 106068095 -43448942 + B2_Mm1a SINE B2 1 173 -20 1 1394 215 31 0 30 chr6 106068095 106068128 -43448909 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1394 372 42 0 0 chr6 106069965 106070007 -43447030 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1394 438 69 0 0 chr6 106070007 106070065 -43446972 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1394 272 324 0 0 chr6 106072078 106072149 -43444888 - B4A SINE B4 -140 152 82 1 1394 452 18 18 0 chr6 106072422 106072479 -43444558 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1394 594 314 57 67 chr6 106072500 106072783 -43444254 - B4A SINE B4 -11 281 2 1 1394 507 69 0 0 chr6 106073934 106074006 -43443031 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1394 2836 138 11 76 chr6 106076375 106076939 -43440098 + Lx3C LINE L1 6443 6969 -7 1 1394 374 357 66 31 chr6 106077096 106077353 -43439684 - MER34 LTR ERV1 -233 309 44 1 1394 423 0 0 0 chr6 106078795 106078842 -43438195 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1394 267 103 0 0 chr6 106078983 106079022 -43438015 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1394 513 32 0 0 chr6 106079965 106080028 -43437009 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1394 237 132 0 0 chr6 106080532 106080570 -43436467 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1394 316 309 103 33 chr6 106080630 106080812 -43436225 + L1MA6 LINE L1 5973 6163 -137 1 1394 1605 196 67 96 chr6 106080812 106081292 -43435745 - RMER4A LTR ERVK 0 466 1 1 1394 316 309 103 33 chr6 106081292 106081380 -43435657 + L1MA6 LINE L1 6164 6262 -38 1 1394 198 143 0 0 chr6 106081390 106081425 -43435612 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1394 569 303 126 20 chr6 106081635 106081881 -43435156 + B4A SINE B4 3 274 -18 1 1394 453 19 0 0 chr6 106081925 106081979 -43435058 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1394 274 270 125 16 chr6 106081996 106082124 -43434913 - L1MB8 LINE L1 -164 6014 5873 1 1394 22 35 0 0 chr6 106082308 106082337 -43434700 + AT_rich Low_complexity Low_complexity 1 29 0 1 1394 3187 58 2 19 chr6 106084070 106084492 -43432545 + L1Md_F2 LINE L1 6168 6582 0 1 1394 3738 154 74 12 chr6 106084579 106085269 -43431768 + Lx2B LINE L1 6268 7000 0 1 1394 183 80 0 0 chr6 106085272 106085297 -43431740 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 1 1394 246 81 0 0 chr6 106086527 106086564 -43430473 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 1 1394 738 67 0 0 chr6 106086573 106086678 -43430359 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1394 31 0 0 0 chr6 106087820 106087851 -43429186 + AT_rich Low_complexity Low_complexity 1 31 0 1 1394 422 200 192 0 chr6 106088627 106088747 -43428290 - B1_Mus1 SINE Alu -1 147 5 1 1394 3041 77 2 0 chr6 106089177 106089582 -43427455 - L1Md_A LINE L1 0 6582 6177 1 1394 9569 76 5 5 chr6 106089600 106091560 -43425477 - L1Md_F2 LINE L1 -9 6573 4615 1 1394 921 66 0 0 chr6 106092104 106092225 -43424812 + (CTCTG)n Simple_repeat Simple_repeat 5 125 0 1 1394 776 194 14 0 chr6 106092237 106092381 -43424656 - B1_Mus1 SINE Alu -1 147 2 1 1394 1016 131 12 0 chr6 106092415 106092575 -43424462 + URR1A DNA MER1_type 65 226 0 1 1394 513 0 0 0 chr6 106093057 106093114 -43423923 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1394 486 0 0 0 chr6 106093115 106093169 -43423868 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1394 262 262 0 12 chr6 106093524 106093609 -43423428 - Lx6 LINE L1 -15 7445 7362 1 1394 1851 258 110 13 chr6 106093636 106094171 -43422866 - Lx6 LINE L1 -366 7094 6508 1 1394 7763 49 4 5 chr6 106095018 106096455 -43420582 - L1Md_F3 LINE L1 -258 6326 4888 1 1394 1945 26 0 13 chr6 106096455 106096692 -43420345 + L1Md_F3 LINE L1 6337 6570 -14 1 1394 656 305 10 24 chr6 106096969 106097174 -43419863 + B3 SINE B2 2 203 -13 1 1394 5221 140 27 7 chr6 106097747 106098605 -43418432 - Lx3C LINE L1 -2 6974 6100 1 1394 456 123 0 0 chr6 106098999 106099072 -43417965 + (GGGGA)n Simple_repeat Simple_repeat 4 76 0 1 1394 425 296 118 12 chr6 106099161 106099322 -43417715 - B4 SINE B4 -3 289 112 1 1394 24 85 0 0 chr6 106100157 106100216 -43416821 + AT_rich Low_complexity Low_complexity 1 59 0 1 1394 252 333 168 17 chr6 106100467 106100586 -43416451 + B3 SINE B2 38 174 -42 1 1394 303 342 17 17 chr6 106100719 106100835 -43416202 + MLT1C LTR MaLR 348 463 -4 1 1394 534 31 0 0 chr6 106101167 106101231 -43415806 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1394 404 327 41 58 chr6 106101233 106101405 -43415632 - B4A SINE B4 -116 176 8 1 1394 231 302 0 135 chr6 106101429 106101477 -43415560 - PB1D7 SINE Alu 0 120 85 1 1394 261 0 0 0 chr6 106101477 106101506 -43415531 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1394 231 302 0 135 chr6 106101506 106101568 -43415469 - PB1D7 SINE Alu -36 84 25 1 1394 1970 117 3 3 chr6 106101585 106101876 -43415161 + L1_Mus3 LINE L1 6228 6518 -120 1 1394 289 284 74 49 chr6 106103921 106104043 -43412994 + B1F SINE Alu 23 147 -2 1 1394 362 299 0 25 chr6 106105097 106105217 -43411820 - PB1D10 SINE Alu 0 117 1 1 1394 3045 71 0 18 chr6 106107017 106107417 -43409620 + L1_Mus1 LINE L1 6175 6567 0 1 1394 396 0 0 0 chr6 106107437 106107481 -43409556 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1394 522 290 6 24 chr6 106107615 106107781 -43409256 + RSINE1 SINE B4 3 165 0 1 1394 583 61 0 6 chr6 106107854 106107944 -43409093 + ORR1A2 LTR MaLR 2 87 -259 1 1394 314 229 0 9 chr6 106108400 106108510 -43408527 - Lx6 LINE L1 -11 7449 7341 1 1394 34 24 0 0 chr6 106108704 106108745 -43408292 + AT_rich Low_complexity Low_complexity 1 41 0 1 1394 367 288 98 52 chr6 106108754 106109040 -43407997 - L1M2 LINE L1 -499 5792 5494 1 1394 1660 177 42 44 chr6 106109055 106109416 -43407621 - ORR1C1 LTR MaLR 0 378 19 1 1394 900 0 0 0 chr6 106109645 106109745 -43407292 + (GAAA)n Simple_repeat Simple_repeat 3 102 0 1 1394 214 220 10 62 chr6 106110288 106110385 -43406652 + (TATAA)n Simple_repeat Simple_repeat 3 94 0 1 1394 201 164 36 18 chr6 106110392 106110448 -43406589 + (CTTTA)n Simple_repeat Simple_repeat 4 60 0 1 1394 27 29 0 0 chr6 106112938 106112972 -43404065 + AT_rich Low_complexity Low_complexity 1 34 0 1 1394 3456 132 11 4 chr6 106112985 106113534 -43403503 - Lx3C LINE L1 -1 6975 6423 1 1394 5182 146 49 8 chr6 106113534 106114440 -43402597 - RMER17B LTR ERVK 0 958 16 1 1394 2764 95 65 13 chr6 106114443 106114891 -43402146 - Lx3C LINE L1 -548 6428 5958 1 1394 1235 296 24 9 chr6 106115580 106115918 -43401119 - ORR1D2 LTR MaLR -27 343 1 1 1394 576 0 0 0 chr6 106116062 106116126 -43400911 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1 1394 314 315 0 0 chr6 106116591 106116664 -43400373 - RSINE1 SINE B4 -58 107 35 1 1394 536 301 143 18 chr6 106116764 106117218 -43399819 - L1MC4a LINE L1 -62 7820 7310 1 1394 447 19 0 0 chr6 106117605 106117657 -43399380 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1394 186 232 35 35 chr6 106117801 106117859 -43399178 - L3 LINE CR1 -804 3685 3628 1 1394 222 280 18 115 chr6 106118180 106118293 -43398744 + L3 LINE CR1 941 1042 -3447 1 1394 390 317 57 71 chr6 106118566 106118919 -43398118 - Lx8 LINE L1 -11 7462 7115 1 1394 676 307 86 7 chr6 106119164 106119558 -43397479 - Lx9 LINE L1 -285 7359 6899 1 1394 444 284 99 20 chr6 106120613 106120764 -43396273 - MIRb SINE MIR -78 190 28 1 1394 293 349 84 6 chr6 106120789 106120956 -43396081 + MER117 DNA MER1_type 18 197 0 1 1394 809 242 60 5 chr6 106121608 106121807 -43395230 + B3 SINE B2 3 212 -4 1 1394 24 77 0 0 chr6 106122135 106122187 -43394850 + AT_rich Low_complexity Low_complexity 1 52 0 1 1394 363 350 0 0 chr6 106122883 106122986 -43394051 + B3A SINE B2 30 132 -66 1 1394 225 344 37 43 chr6 106124213 106124374 -43392663 + MIRb SINE MIR 51 210 -58 1 1394 682 93 0 41 chr6 106125116 106125239 -43391798 - L1Md_F2 LINE L1 -11 6571 6454 1 1394 246 271 42 28 chr6 106125239 106125311 -43391726 - B4 SINE B4 -218 74 2 1 1394 219 343 129 21 chr6 106125842 106125982 -43391055 + L2b LINE L2 3214 3368 -7 1 1394 182 378 0 22 chr6 106127643 106127735 -43389302 + L2c LINE L2 3276 3365 -22 1 1394 1394 195 11 130 chr6 106127947 106128221 -43388816 - MTD LTR MaLR -107 312 61 1 1394 1024 121 0 0 chr6 106128221 106128361 -43388676 - B1_Mus1 SINE Alu -6 142 3 1 1394 1394 195 11 130 chr6 106128361 106128440 -43388597 - MTD LTR MaLR -359 60 1 1 1394 3210 81 31 2 chr6 106128468 106128916 -43388121 - L1_Mus4 LINE L1 -11 6625 6165 1 1394 552 318 25 10 chr6 106129380 106129580 -43387457 - Lx8 LINE L1 -309 7164 6962 1 1394 724 49 36 109 chr6 106129714 106129851 -43387186 + L1Md_F3 LINE L1 6457 6583 -1 1 1394 239 264 45 22 chr6 106130367 106130456 -43386581 - Lx9 LINE L1 -1751 5893 5803 1 1394 355 267 47 19 chr6 106131393 106131500 -43385537 + PB1D7 SINE Alu 3 112 -8 1 1394 228 309 47 23 chr6 106132772 106132858 -43384179 - MIRb SINE MIR -27 241 154 1 1394 201 74 0 0 chr6 106133688 106133715 -43383322 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 1394 233 295 66 0 chr6 106134417 106134478 -43382559 + L2a LINE L2 3327 3391 -35 1 1394 408 339 46 27 chr6 106134815 106135032 -43382005 + LTR16E1 LTR ERVL 110 387 -151 1 1394 248 269 98 105 chr6 106135358 106135491 -43381546 + MIR3 SINE MIR 88 222 -46 2 1394 335 228 27 24 chr6 106135840 106136216 -43380821 + (CA)n Simple_repeat Simple_repeat 1 377 0 2 1394 1480 243 39 28 chr6 106136854 106137214 -43379823 + ORR1D2 LTR MaLR 3 366 -4 2 1394 192 185 0 0 chr6 106138469 106138523 -43378514 + (ATGGTG)n Simple_repeat Simple_repeat 1 54 0 2 1394 191 190 0 17 chr6 106138751 106138810 -43378227 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1394 1462 81 31 9 chr6 106139257 106139480 -43377557 - L1_Mus3 LINE L1 0 6638 6411 2 1394 260 273 147 29 chr6 106140606 106140776 -43376261 + Charlie5 DNA MER1_type 2431 2620 -4 2 1394 716 256 17 22 chr6 106140806 106140986 -43376051 + B3A SINE B2 5 183 -15 2 1394 3434 227 52 28 chr6 106141136 106141947 -43375090 - Lx5 LINE L1 -9 7041 6212 2 1394 477 0 0 0 chr6 106141952 106142005 -43375032 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1394 384 331 94 28 chr6 106142119 106142545 -43374492 + L1MB7 LINE L1 5724 6177 -7 2 1394 477 294 98 0 chr6 106142625 106142819 -43374218 + Lx9 LINE L1 7283 7495 -149 2 1394 766 96 20 20 chr6 106142870 106143019 -43374018 + RMER17B LTR ERVK 312 460 -498 2 1394 743 281 10 10 chr6 106143580 106143788 -43373249 + B3 SINE B2 1 208 -8 2 1394 609 14 0 0 chr6 106144526 106144596 -43372441 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1394 24 53 0 0 chr6 106145134 106145172 -43371865 + AT_rich Low_complexity Low_complexity 1 38 0 2 1394 21 0 0 0 chr6 106145321 106145342 -43371695 + AT_rich Low_complexity Low_complexity 1 21 0 2 1394 596 339 11 11 chr6 106146177 106146356 -43370681 + MTEa LTR MaLR 1 179 -200 2 1394 193 247 11 23 chr6 106146356 106146443 -43370594 + GA-rich Low_complexity Low_complexity 3 88 0 2 1394 285 293 101 75 chr6 106146475 106146663 -43370374 + MTEa LTR MaLR 179 371 -8 2 1394 315 0 0 0 chr6 106147346 106147381 -43369656 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1394 1967 204 62 0 chr6 106147783 106148171 -43368866 - MTC LTR MaLR 0 421 10 2 1394 831 171 28 14 chr6 106148307 106148449 -43368588 - B1_Mur4 SINE Alu 0 150 7 2 1394 1117 349 81 33 chr6 106148872 106149788 -43367249 - Lx9 LINE L1 -214 7430 6471 2 1394 321 315 7 7 chr6 106150212 106150362 -43366675 + (TA)n Simple_repeat Simple_repeat 1 150 0 2 1394 189 0 0 0 chr6 106151218 106151239 -43365798 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1394 338 261 41 57 chr6 106151496 106151618 -43365419 - MLT1F LTR MaLR -51 497 378 2 1394 278 234 167 21 chr6 106151618 106151714 -43365323 - L1_Mur3 LINE L1 -318 5562 5453 2 1394 2442 283 91 23 chr6 106151872 106152900 -43364137 - Lx6 LINE L1 -26 7434 6101 2 1394 2898 189 33 91 chr6 106152920 106152984 -43364053 + L1_Mur2 LINE L1 1943 2010 -3867 2 1394 414 0 0 0 chr6 106152984 106153030 -43364007 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1394 2898 189 33 91 chr6 106153030 106153814 -43363223 + L1_Mur2 LINE L1 2011 2742 -3135 2 1394 540 81 0 0 chr6 106153885 106153959 -43363078 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 2 1394 540 0 0 0 chr6 106153960 106154020 -43363017 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1394 275 316 0 0 chr6 106154022 106154139 -43362898 - L1M2 LINE L1 -2892 3251 3135 2 1394 738 231 144 7 chr6 106154139 106154426 -43362611 - ORR1D-int LTR MaLR -87 1422 1055 2 1394 241 372 62 24 chr6 106154441 106154813 -43362224 - MusHAL1 LINE L1 -927 1785 1400 2 1394 1666 48 0 0 chr6 106154859 106155067 -43361970 + L1_Mus1 LINE L1 6360 6567 0 2 1394 194 91 0 29 chr6 106155476 106155510 -43361527 + (ATG)n Simple_repeat Simple_repeat 1 33 0 2 1394 276 396 106 6 chr6 106155554 106155724 -43361313 - ID_B1 SINE B4 -34 190 4 2 1394 22 0 0 0 chr6 106156525 106156547 -43360490 + AT_rich Low_complexity Low_complexity 1 22 0 2 1394 255 303 144 11 chr6 106159740 106159830 -43357207 + B4A SINE B4 189 290 -2 2 1394 459 35 0 0 chr6 106159852 106159909 -43357128 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1394 3617 25 121 0 chr6 106159952 106160392 -43356645 - MT2_Mm LTR ERVL 0 493 1 2 1394 212 128 21 21 chr6 106161118 106161166 -43355871 + (TTAA)n Simple_repeat Simple_repeat 4 51 0 2 1394 22 0 0 0 chr6 106161402 106161424 -43355613 + AT_rich Low_complexity Low_complexity 1 22 0 2 1394 1433 221 16 104 chr6 106161691 106161754 -43355283 - ORR1B1 LTR MaLR -8 386 348 2 1394 2552 170 45 2 chr6 106161754 106162221 -43354816 - Lx2B LINE L1 -3 6997 6511 2 1394 1433 221 16 104 chr6 106162221 106162541 -43354496 - ORR1B1 LTR MaLR -47 347 37 2 1394 3182 237 90 4 chr6 106164694 106165430 -43351607 - Lx6 LINE L1 -5 7455 6657 2 1394 186 417 12 0 chr6 106165726 106165810 -43351227 - MIR SINE MIR -58 150 66 2 1394 476 349 26 65 chr6 106165826 106166056 -43350981 + B4A SINE B4 30 250 -42 2 1394 1064 101 6 0 chr6 106166086 106166264 -43350773 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 2 1394 638 133 0 15 chr6 106166266 106166403 -43350634 + (TCCC)n Simple_repeat Simple_repeat 4 138 0 2 1394 721 272 64 96 chr6 106167128 106167502 -43349535 - ORR1D1 LTR MaLR -10 364 3 2 1394 25 0 0 0 chr6 106167988 106168013 -43349024 + AT_rich Low_complexity Low_complexity 1 25 0 2 174 4546 72 0 0 chr6 106168085 106168718 -43348319 - L1_Mus1 LINE L1 0 6567 5983 2 1395 252 353 135 43 chr6 106168750 106169149 -43347888 - L2 LINE L2 -387 3032 2597 2 1395 364 339 119 53 chr6 106169787 106170124 -43346913 - L2 LINE L2 -338 3081 2723 2 1395 1752 175 30 3 chr6 106170336 106170669 -43346368 + Lx2 LINE L1 6656 6997 0 2 1395 915 295 4 15 chr6 106171242 106171496 -43345541 - Lx6 LINE L1 -780 6680 6299 2 1395 4333 16 43 0 chr6 106171757 106172263 -43344774 - L1Md_A LINE L1 0 6582 6055 2 1395 778 223 29 15 chr6 106172456 106172661 -43344376 + B3 SINE B2 1 208 -8 2 1395 22 0 0 0 chr6 106172836 106172858 -43344179 + AT_rich Low_complexity Low_complexity 1 22 0 2 1395 300 371 29 58 chr6 106172887 106173093 -43343944 + MLT1A1 LTR MaLR 166 408 0 2 1395 985 179 10 31 chr6 106173172 106173368 -43343669 + Lx3C LINE L1 6779 6970 -6 2 1395 3328 38 2 0 chr6 106174082 106174477 -43342560 - MTA_Mm LTR MaLR 0 396 1 2 1395 924 285 65 4 chr6 106174690 106174951 -43342086 + MTD LTR MaLR 1 277 -142 2 1395 210 118 0 0 chr6 106175393 106175427 -43341610 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1395 425 320 162 7 chr6 106177170 106177349 -43339688 + B3A SINE B2 2 197 -19 2 1395 895 113 7 22 chr6 106177668 106177804 -43339233 + B1_Mus2 SINE Alu 2 135 -12 2 1395 302 0 26 0 chr6 106177806 106177844 -43339193 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1395 522 0 0 0 chr6 106179553 106179611 -43337426 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1395 637 331 12 6 chr6 106179686 106179853 -43337184 + B4A SINE B4 115 282 -10 2 1395 317 82 20 0 chr6 106179853 106179902 -43337135 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1395 190 355 137 7 chr6 106180047 106180200 -43336837 - L2 LINE L2 -924 2495 2323 2 1395 214 274 0 0 chr6 106181659 106181721 -43335316 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1395 315 365 27 22 chr6 106181786 106181971 -43335066 - MIR SINE MIR -62 200 15 2 1395 604 303 111 25 chr6 106182192 106182625 -43334412 - L1MA5 LINE L1 -475 5825 5356 2 1395 777 163 43 38 chr6 106182631 106182816 -43334221 + Lx LINE L1 6466 6651 -3 2 1395 573 42 0 0 chr6 106183128 106183200 -43333837 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 2 1395 22 56 0 0 chr6 106186707 106186743 -43330294 + AT_rich Low_complexity Low_complexity 1 36 0 2 1395 344 304 69 78 chr6 106187979 106188057 -43328980 + Charlie4a DNA MER1_type 75 146 -362 2 1395 5229 49 9 12 chr6 106188057 106188719 -43328318 + L1Md_F2 LINE L1 5923 6582 0 2 1395 344 304 69 78 chr6 106188719 106188858 -43328179 + Charlie4a DNA MER1_type 147 290 -218 2 1395 270 192 40 14 chr6 106188988 106189062 -43327975 + Charlie4a DNA MER1_type 368 443 -65 2 1395 815 343 41 32 chr6 106189076 106189516 -43327521 + Lx9 LINE L1 6884 7327 -317 2 1395 337 389 32 32 chr6 106189967 106190246 -43326791 + B4A SINE B4 1 279 -13 2 1395 456 330 22 39 chr6 106190477 106190657 -43326380 + MIRb SINE MIR 39 215 -53 2 1395 216 163 0 0 chr6 106190776 106190819 -43326218 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1395 396 382 14 14 chr6 106191429 106191716 -43325321 - B4A SINE B4 -4 288 2 2 1395 227 322 23 0 chr6 106191935 106192022 -43325015 - L1M5 LINE L1 -726 5514 5426 2 1395 225 277 39 19 chr6 106192186 106192289 -43324748 - L1M5 LINE L1 -954 5192 5088 2 1395 590 312 23 69 chr6 106192628 106192931 -43324106 + B4A SINE B4 4 292 0 2 1395 419 155 0 12 chr6 106192931 106193016 -43324021 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1395 468 0 0 0 chr6 106194917 106194969 -43322068 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1395 536 358 6 36 chr6 106195370 106195538 -43321499 - RSINE1 SINE B4 0 165 3 2 1395 895 246 5 10 chr6 106197226 106197435 -43319602 + B3 SINE B2 3 210 -6 2 1395 5703 86 17 0 chr6 106197478 106198257 -43318780 - Lx3_Mus LINE L1 0 7009 6218 2 1395 214 200 20 0 chr6 106198563 106198613 -43318424 + GA-rich Low_complexity Low_complexity 6 56 0 2 1395 21 0 0 0 chr6 106199096 106199117 -43317920 + AT_rich Low_complexity Low_complexity 1 21 0 2 1395 233 257 52 60 chr6 106200021 106200137 -43316900 - Lx8 LINE L1 -6 7467 7353 2 1395 215 31 31 0 chr6 106200141 106200173 -43316864 + (TATAA)n Simple_repeat Simple_repeat 5 37 0 2 1395 1647 133 14 32 chr6 106200397 106200676 -43316361 - Lx3B LINE L1 -2 6971 6698 2 1395 192 301 95 14 chr6 106201107 106201181 -43315856 + MIR SINE MIR 34 113 -149 2 1395 318 132 0 0 chr6 106202350 106202403 -43314634 + (A)n Simple_repeat Simple_repeat 1 53 0 2 1395 182 344 28 133 chr6 106202952 106203033 -43314004 + L2 LINE L2 2738 2816 -603 3 1395 616 262 96 10 chr6 106203033 106203230 -43313807 + B3 SINE B2 3 216 0 3 1395 182 344 28 133 chr6 106203230 106203433 -43313604 + L2 LINE L2 2817 2992 -427 3 1395 180 97 0 0 chr6 106204253 106204284 -43312753 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1395 4205 108 3 20 chr6 106205484 106206279 -43310758 - L1_Mus3 LINE L1 -662 5976 5205 3 1395 4772 82 17 3 chr6 106206281 106206928 -43310109 + L1_Mus3 LINE L1 5980 6635 -3 3 1395 24 32 0 0 chr6 106206928 106206959 -43310078 + AT_rich Low_complexity Low_complexity 1 31 0 3 1395 23 54 0 0 chr6 106211020 106211057 -43305980 + AT_rich Low_complexity Low_complexity 1 37 0 3 1395 182 311 68 0 chr6 106211114 106211188 -43305849 + MIR SINE MIR 96 174 -88 3 1395 613 343 42 9 chr6 106211303 106211515 -43305522 - ID_B1 SINE B4 -2 222 4 3 1395 415 321 0 29 chr6 106211577 106211715 -43305322 - MLT1B LTR MaLR -7 383 250 3 1395 615 167 10 0 chr6 106211716 106211812 -43305225 + B1_Mus1 SINE Alu 3 99 -49 3 1395 618 289 9 4 chr6 106211817 106211994 -43305043 + B3 SINE B2 33 210 -6 3 1395 369 0 0 0 chr6 106213221 106213262 -43303775 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1395 531 325 51 77 chr6 106213386 106213736 -43303301 - MARNA DNA Mariner -85 501 161 3 1395 531 0 0 0 chr6 106215112 106215171 -43301866 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1395 1317 299 70 79 chr6 106215415 106216026 -43301011 + RLTR18 LTR ERVK 1 606 -10 3 1395 252 0 0 0 chr6 106216186 106216214 -43300823 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1395 812 187 35 6 chr6 106217333 106217505 -43299532 - Lx6 LINE L1 -4 7456 7280 3 1395 228 244 110 0 chr6 106217789 106217871 -43299166 + L2a LINE L2 3336 3426 0 3 1395 682 269 14 28 chr6 106219582 106219796 -43297241 - B3 SINE B2 -4 212 2 3 1395 278 356 28 85 chr6 106222410 106222551 -43294486 - MLT1J1 LTR MaLR -177 267 135 3 1395 378 0 0 0 chr6 106222566 106222608 -43294429 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1395 504 0 0 0 chr6 106222608 106222663 -43294374 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1395 230 155 52 0 chr6 106223349 106223407 -43293630 + T-rich Low_complexity Low_complexity 5 65 0 3 1395 417 164 0 0 chr6 106223422 106223538 -43293499 + T-rich Low_complexity Low_complexity 3 118 0 3 1395 321 373 160 4 chr6 106223589 106223845 -43293192 + L1MB5 LINE L1 5723 6018 -156 3 1395 22 0 0 0 chr6 106223876 106223898 -43293139 + AT_rich Low_complexity Low_complexity 1 22 0 3 1395 4011 32 0 0 chr6 106224032 106224505 -43292532 - L1Md_A LINE L1 0 6582 6110 3 1395 3150 84 0 0 chr6 106224594 106225011 -43292026 - L1_Mus1 LINE L1 -1 6566 6150 3 1395 584 72 0 12 chr6 106225011 106225095 -43291942 + L1_Mus1 LINE L1 6079 6161 -406 3 1395 21 36 0 0 chr6 106225133 106225161 -43291876 + AT_rich Low_complexity Low_complexity 1 28 0 3 1395 630 39 0 0 chr6 106225617 106225694 -43291343 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 3 1395 423 0 0 0 chr6 106225694 106225741 -43291296 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1395 3405 109 10 12 chr6 106225741 106226251 -43290786 - L1_Mus3 LINE L1 -1 6637 6129 3 1395 21 57 0 0 chr6 106226560 106226595 -43290442 + AT_rich Low_complexity Low_complexity 1 35 0 3 1395 223 368 113 82 chr6 106228641 106228872 -43288165 + B4A SINE B4 5 242 -50 3 1395 667 69 20 0 chr6 106228929 106229031 -43288006 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1395 222 217 22 0 chr6 106229033 106229079 -43287958 + GA-rich Low_complexity Low_complexity 5 51 0 3 1395 186 232 27 68 chr6 106229378 106229452 -43287585 - L2a LINE L2 -1 3425 3355 3 1395 245 276 52 0 chr6 106229708 106229766 -43287271 + Lx8 LINE L1 6941 7001 -472 3 1395 347 342 47 14 chr6 106229755 106229903 -43287134 + Lx7 LINE L1 7024 7176 -520 3 1395 2563 53 48 0 chr6 106230154 106230491 -43286546 + L1Md_F3 LINE L1 6232 6584 0 3 1395 348 279 0 190 chr6 106230599 106230736 -43286301 - B4 SINE B4 0 292 182 3 1395 558 0 0 0 chr6 106230796 106230858 -43286179 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1395 507 33 0 0 chr6 106230859 106230920 -43286117 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1395 34 55 0 0 chr6 106231209 106231264 -43285773 + AT_rich Low_complexity Low_complexity 1 55 0 3 1395 225 0 0 0 chr6 106231955 106231980 -43285057 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1395 547 313 125 11 chr6 106234836 106235020 -43282017 + B3 SINE B2 4 208 -8 3 1395 311 278 39 8 chr6 106235182 106235309 -43281728 - L1MB8 LINE L1 -248 5930 5800 3 1395 1482 178 3 109 chr6 106235667 106236033 -43281004 + ORR1A4 LTR MaLR 3 329 0 3 1395 1105 82 0 14 chr6 106236310 106236458 -43280579 - B1_Mus2 SINE Alu 0 147 2 3 1395 1595 227 11 16 chr6 106237141 106237513 -43279524 - ORR1D1 LTR MaLR -4 370 1 3 1395 22 0 0 0 chr6 106238389 106238411 -43278626 + AT_rich Low_complexity Low_complexity 1 22 0 3 1395 180 347 80 34 chr6 106238872 106239048 -43277989 + MER5A DNA MER1_type 2 185 -4 3 1395 2273 86 9 0 chr6 106239565 106239880 -43277157 + L1_Mus1 LINE L1 6249 6566 -1 3 1395 709 299 39 81 chr6 106239916 106240200 -43276837 + B4A SINE B4 2 273 -19 3 1395 234 337 135 10 chr6 106240233 106240329 -43276708 + PB1D9 SINE Alu 7 114 -6 3 1395 3137 34 42 0 chr6 106240437 106240817 -43276220 + MTA_Mm LTR MaLR 1 396 0 3 1395 284 370 0 49 chr6 106242046 106242169 -43274868 + B1F2 SINE Alu 11 128 -21 3 1395 3286 21 0 13 chr6 106242784 106243177 -43273860 - L1Md_F2 LINE L1 -14 6568 6181 3 1395 227 173 19 0 chr6 106244448 106244500 -43272537 + CT-rich Low_complexity Low_complexity 1 53 0 3 1395 220 314 47 0 chr6 106244500 106244586 -43272451 - PB1D9 SINE Alu 0 120 31 3 1395 225 0 0 0 chr6 106245127 106245152 -43271885 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 1395 585 0 0 0 chr6 106246647 106246712 -43270325 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1395 527 29 14 0 chr6 106246712 106246780 -43270257 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1395 452 296 85 62 chr6 106247430 106247689 -43269348 + MER58B DNA MER1_type 52 316 -25 3 1395 1897 96 50 0 chr6 106248498 106248779 -43268258 - Lx LINE L1 -5 6649 6355 3 1395 1878 98 0 4 chr6 106248780 106249037 -43268000 + L1_Mus4 LINE L1 5903 6158 -478 3 1395 236 327 19 75 chr6 106249061 106249167 -43267870 - PB1 SINE Alu -2 125 26 3 1395 1056 77 0 0 chr6 106249813 106249956 -43267081 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 3 1395 6428 129 37 13 chr6 106249961 106251072 -43265965 - Lx LINE L1 -8 6646 5510 3 1395 201 238 0 23 chr6 106251959 106252002 -43265035 - L2 LINE L2 -2041 1378 1337 3 1395 197 65 0 31 chr6 106252437 106252469 -43264568 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 3 1395 878 291 5 0 chr6 106252774 106252980 -43264057 + B3 SINE B2 1 207 -9 3 1395 248 344 21 86 chr6 106253017 106253157 -43263880 + B4 SINE B4 42 172 -120 3 1395 429 70 0 0 chr6 106253265 106253322 -43263715 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1395 24 0 0 0 chr6 106253373 106253397 -43263640 + AT_rich Low_complexity Low_complexity 1 24 0 3 1395 486 33 0 0 chr6 106253458 106253518 -43263519 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1395 22 0 0 0 chr6 106253629 106253651 -43263386 + AT_rich Low_complexity Low_complexity 1 22 0 3 1395 498 333 56 21 chr6 106254211 106254355 -43262682 + RSINE1 SINE B4 3 151 -14 3 1395 561 15 0 0 chr6 106254475 106254541 -43262496 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1395 584 316 26 0 chr6 106254548 106254700 -43262337 - B3A SINE B2 -42 156 1 3 1395 375 306 92 0 chr6 106255189 106255362 -43261675 - B3A SINE B2 -8 190 2 3 1395 787 317 96 37 chr6 106256073 106256119 -43260918 - MLT2D LTR ERVL 0 414 369 3 1395 360 0 0 0 chr6 106256119 106256159 -43260878 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 1395 369 0 0 0 chr6 106256159 106256199 -43260838 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1395 787 317 96 37 chr6 106256199 106256426 -43260611 - MLT2D LTR ERVL -46 368 126 3 1395 837 267 88 83 chr6 106256426 106256777 -43260260 + ORR1E LTR MaLR 5 357 -2 3 1395 787 317 96 37 chr6 106256777 106256878 -43260159 - MLT2D LTR ERVL -289 125 17 3 1395 465 160 0 0 chr6 106257396 106257521 -43259516 + (TG)n Simple_repeat Simple_repeat 1 125 0 3 1395 579 331 0 0 chr6 106258388 106258521 -43258516 + ID_B1 SINE B4 87 219 -5 3 1395 1033 298 149 29 chr6 106258527 106258996 -43258041 + Lx8 LINE L1 6803 7326 -147 3 1395 636 56 0 0 chr6 106258996 106259085 -43257952 + (GTTTG)n Simple_repeat Simple_repeat 1 89 0 3 1395 1033 298 149 29 chr6 106259085 106259206 -43257831 + Lx8 LINE L1 7327 7464 -9 3 1395 230 0 33 0 chr6 106259617 106259647 -43257390 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 3 1395 292 243 0 14 chr6 106260495 106260566 -43256471 - MLT1N2 LTR MaLR -4 558 489 3 1395 204 122 0 0 chr6 106261248 106261289 -43255748 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1395 219 146 0 0 chr6 106261342 106261383 -43255654 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1395 3216 145 69 13 chr6 106262282 106262890 -43254147 - RLTR26 LTR ERVK 0 642 1 3 1395 267 294 70 78 chr6 106263718 106263847 -43253190 + ORR1E LTR MaLR 68 195 -164 3 1395 36450 55 1 24 chr6 106265304 106270984 -43246053 + L1Md_T LINE L1 101 5586 -297 3 1395 7970 57 0 0 chr6 106270984 106271980 -43245057 + L1Md_T LINE L1 5587 6582 0 3 1395 3010 96 2 25 chr6 106272160 106272607 -43244430 + Lx LINE L1 6218 6654 0 3 1395 252 111 0 0 chr6 106272757 106272802 -43244235 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1395 306 0 0 0 chr6 106273635 106273669 -43243368 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1395 450 0 0 0 chr6 106273754 106273804 -43243233 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1395 573 61 0 0 chr6 106273804 106273885 -43243152 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1395 235 224 0 17 chr6 106274342 106274401 -43242636 + B4A SINE B4 86 143 -149 4 1395 1820 44 0 0 chr6 106277395 106277622 -43239415 - L1_Mm LINE L1 -4011 1872 1646 4 1395 1121 294 54 22 chr6 106277665 106278072 -43238965 - Lx8 LINE L1 -132 7341 6922 4 1395 369 323 155 0 chr6 106278132 106278287 -43238750 - B3A SINE B2 -18 180 2 4 1395 603 321 48 33 chr6 106278316 106278587 -43238450 + MLT1-int LTR MaLR 1038 1312 -59 4 1395 375 23 0 0 chr6 106278587 106278631 -43238406 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 4 1395 2439 145 3 0 chr6 106279298 106279657 -43237380 - ORR1B2 LTR MaLR -2 365 6 4 1395 513 299 156 0 chr6 106279698 106279852 -43237185 + B3A SINE B2 3 180 -18 4 1395 250 179 18 0 chr6 106279862 106279918 -43237119 + GA-rich Low_complexity Low_complexity 2 58 0 4 1395 1467 282 72 3 chr6 106280766 106281154 -43235883 + MTC LTR MaLR 7 421 0 4 1395 24 0 0 0 chr6 106281218 106281242 -43235795 + AT_rich Low_complexity Low_complexity 1 24 0 4 1395 441 305 25 0 chr6 106281376 106281494 -43235543 - MLT1A1 LTR MaLR -77 331 211 4 1395 448 219 149 0 chr6 106281829 106281943 -43235094 + ORR1D2 LTR MaLR 1 131 -239 4 1395 200 132 26 0 chr6 106282896 106282934 -43234103 + (TTATA)n Simple_repeat Simple_repeat 5 43 0 4 1395 363 331 8 32 chr6 106283134 106283259 -43233778 + PB1 SINE Alu 4 125 -2 4 1395 750 149 8 0 chr6 106283824 106284074 -43232963 + CT-rich Low_complexity Low_complexity 1 252 0 4 1395 498 321 18 2 chr6 106284702 106284928 -43232109 + L1MC2 LINE L1 6043 6278 -55 4 1395 868 246 68 32 chr6 106285091 106285339 -43231698 - MER46C DNA MER2_type -1 337 81 4 1395 630 0 0 0 chr6 106287840 106287910 -43229127 + (GA)n Simple_repeat Simple_repeat 2 71 0 4 1395 1103 71 0 0 chr6 106288185 106288326 -43228711 - L1Md_F2 LINE L1 -446 6136 5996 4 1395 2694 62 0 17 chr6 106288326 106288688 -43228349 + L1Md_F2 LINE L1 6215 6570 -12 4 1395 602 65 11 0 chr6 106289657 106289749 -43227288 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 4 1395 404 333 21 0 chr6 106290561 106290702 -43226335 - B1F SINE Alu -4 145 2 4 1395 689 262 91 10 chr6 106290961 106291032 -43226005 + B3 SINE B2 2 81 -135 4 1395 1696 198 70 65 chr6 106291032 106291475 -43225562 - RLTR41 LTR ERV1 -1 445 1 4 1395 689 262 91 10 chr6 106291475 106291586 -43225451 + B3 SINE B2 82 200 -16 4 1395 450 0 0 0 chr6 106291586 106291636 -43225401 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 4 1395 689 262 91 10 chr6 106291636 106291649 -43225388 + B3 SINE B2 201 213 -3 4 1395 600 106 0 50 chr6 106293383 106293502 -43223535 + GA-rich Low_complexity Low_complexity 3 115 0 4 1395 278 306 75 100 chr6 106293965 106294125 -43222912 + Charlie10 DNA MER1_type 5 160 -2662 4 1395 573 255 7 14 chr6 106294885 106295028 -43222009 + B1_Mur1 SINE Alu 1 142 -7 4 1395 278 209 45 18 chr6 106295858 106295876 -43221161 + A-rich Low_complexity Low_complexity 1 18 0 4 1395 207 0 0 0 chr6 106295876 106295899 -43221138 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1395 278 209 45 18 chr6 106295899 106295992 -43221045 + A-rich Low_complexity Low_complexity 19 115 0 4 1395 1122 125 0 0 chr6 106296039 106296215 -43220822 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 4 1395 377 324 115 15 chr6 106296223 106296483 -43220554 + L1MEg LINE L1 1234 1519 -4723 4 1395 1713 244 35 5 chr6 106296690 106297090 -43219947 - MTD LTR MaLR -2 417 6 4 1395 1114 284 53 22 chr6 106297090 106297598 -43219439 + L1MA4 LINE L1 5631 6154 -146 4 1395 636 357 19 14 chr6 106297719 106297935 -43219102 + ID_B1 SINE B4 8 224 0 4 1395 36 53 0 0 chr6 106297935 106297992 -43219045 + AT_rich Low_complexity Low_complexity 1 57 0 4 1395 290 333 48 18 chr6 106298101 106298269 -43218768 + L1MEg LINE L1 1554 1726 -4440 4 1395 372 323 57 67 chr6 106298429 106298817 -43218220 + L1MEg LINE L1 4937 5320 -826 4 1395 422 274 94 13 chr6 106298860 106299033 -43218004 - MTE2b LTR MaLR -23 356 187 4 1396 371 294 78 0 chr6 106299414 106299516 -43217521 + Lx8 LINE L1 6944 7053 -420 4 1396 528 248 69 8 chr6 106302151 106302281 -43214756 - B1_Mur1 SINE Alu -2 147 10 4 1396 418 250 19 9 chr6 106302326 106302431 -43214606 + ID_B1 SINE B4 114 219 -5 4 1396 22 0 0 0 chr6 106305047 106305069 -43211968 + AT_rich Low_complexity Low_complexity 1 22 0 4 1396 693 276 52 0 chr6 106305338 106305530 -43211507 - B3 SINE B2 -14 202 1 4 1396 663 158 36 5 chr6 106305556 106305687 -43211350 - RLTR9B2 LTR ERVK 0 420 243 4 1396 1444 218 38 40 chr6 106306113 106306486 -43210551 + ORR1D1 LTR MaLR 3 374 0 4 1396 5176 142 21 7 chr6 106306931 106307985 -43209052 - L1_Mus4 LINE L1 -681 5955 4886 4 1396 4069 101 3 12 chr6 106308579 106309148 -43207889 - LTRIS2 LTR ERV1 0 564 1 4 1396 35288 71 1 4 chr6 106309237 106315471 -43201566 - L1Md_F2 LINE L1 -12 6573 265 4 1396 432 0 0 0 chr6 106315747 106315795 -43201242 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 4 1396 1132 88 0 0 chr6 106316564 106316712 -43200325 + B1_Mus1 SINE Alu 1 148 0 4 1396 202 68 44 22 chr6 106316713 106316758 -43200279 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 4 1396 451 298 45 15 chr6 106316783 106316916 -43200121 + B1F2 SINE Alu 13 149 0 4 1396 931 142 11 0 chr6 106316935 106317111 -43199926 + GA-rich Low_complexity Low_complexity 3 180 0 4 1396 278 335 66 28 chr6 106317605 106317730 -43199307 - MIRb SINE MIR -28 240 113 4 1396 2178 53 0 7 chr6 106317730 106318013 -43199024 + L1Md_A LINE L1 6301 6581 -1 4 1396 278 328 121 28 chr6 106318013 106318107 -43198930 - MIRb SINE MIR -156 112 10 4 1396 226 270 191 0 chr6 106319129 106319192 -43197845 + ID4 SINE ID 4 78 -5 4 1396 255 335 211 26 chr6 106320750 106320940 -43196097 + MLT1A0 LTR MaLR 124 348 -17 4 1396 204 179 0 0 chr6 106321238 106321277 -43195760 + A-rich Low_complexity Low_complexity 1 39 0 4 1396 501 235 0 0 chr6 106322579 106322677 -43194360 + PB1D9 SINE Alu 1 98 -22 4 1396 231 291 54 72 chr6 106322737 106322848 -43194189 - Charlie2b DNA MER1_type -2376 406 298 4 1396 300 316 10 10 chr6 106322975 106323074 -43193963 - L1MB7 LINE L1 -165 6019 5921 4 1396 304 301 34 117 chr6 106323416 106323698 -43193339 + MTEb LTR MaLR 104 361 -18 4 1396 322 359 50 19 chr6 106323899 106324058 -43192979 + RSINE1 SINE B4 2 165 0 4 1396 186 353 11 34 chr6 106324911 106324999 -43192038 - L2b LINE L2 -261 3114 3029 4 1396 241 333 143 30 chr6 106325340 106325473 -43191564 - MIR SINE MIR -113 149 2 4 1396 29 0 0 0 chr6 106326002 106326031 -43191006 + AT_rich Low_complexity Low_complexity 1 29 0 4 1396 637 259 118 51 chr6 106326226 106326361 -43190676 - Lx9 LINE L1 -4 7640 7514 4 1396 210 71 0 0 chr6 106326361 106326389 -43190648 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1396 637 274 179 57 chr6 106326389 106326844 -43190193 - Lx9 LINE L1 -131 7513 6985 4 1396 188 372 45 39 chr6 106328937 106329091 -43187946 - MIRc SINE MIR -110 158 4 4 1396 22 0 0 0 chr6 106329267 106329289 -43187748 + AT_rich Low_complexity Low_complexity 1 22 0 4 1396 456 308 17 0 chr6 106329495 106329615 -43187422 + B3A SINE B2 3 124 -74 4 1396 411 21 0 0 chr6 106329625 106329673 -43187364 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1396 405 81 0 0 chr6 106329673 106329735 -43187302 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1396 220 347 13 13 chr6 106329793 106329869 -43187168 + ID4 SINE ID 8 83 0 4 1396 253 0 54 0 chr6 106330911 106330948 -43186089 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1396 245 356 77 49 chr6 106330962 106331145 -43185892 + MamRep137 DNA TcMar? 178 365 -79 4 1396 288 53 0 0 chr6 106331257 106331295 -43185742 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1396 720 80 0 0 chr6 106331295 106331407 -43185630 + (GA)n Simple_repeat Simple_repeat 2 114 0 4 1396 187 264 51 89 chr6 106331446 106331525 -43185512 + MIR SINE MIR 108 183 -79 4 1396 2016 138 3 58 chr6 106333855 106334201 -43182836 - ORR1A2 LTR MaLR 0 327 1 4 1396 181 312 86 12 chr6 106336384 106336465 -43180572 + L2c LINE L2 3285 3371 -16 4 1396 932 314 14 24 chr6 106336475 106336769 -43180268 - RMER15 LTR ERVL 0 575 285 4 1396 914 161 25 0 chr6 106336936 106337098 -43179939 - URR1A DNA MER1_type 0 226 61 4 1396 484 340 45 53 chr6 106337218 106337484 -43179553 - B4A SINE B4 -11 281 19 4 1396 477 0 0 0 chr6 106338581 106338634 -43178403 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1396 1148 61 0 0 chr6 106338990 106339138 -43177899 - B1_Mus1 SINE Alu 0 148 1 4 1396 306 0 0 0 chr6 106339716 106339750 -43177287 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 4 1396 613 277 66 20 chr6 106339809 106340131 -43176906 - L1_Rod LINE L1 -685 5495 5097 4 1396 684 304 38 20 chr6 106340130 106340472 -43176565 + L1MA4A LINE L1 5505 5852 -451 4 1396 3445 25 2 0 chr6 106342734 106343127 -43173910 - MTA_Mm LTR MaLR 0 396 3 4 1396 7907 65 14 2 chr6 106343129 106343218 -43173819 - MTA_Mm-int LTR MaLR 0 1098 1010 4 1396 1059 81 0 36 chr6 106343218 106343384 -43173653 + L1Md_F2 LINE L1 6411 6570 -12 4 1396 7907 65 14 2 chr6 106343384 106344379 -43172658 - MTA_Mm-int LTR MaLR -89 1009 2 4 1396 3302 33 5 2 chr6 106344379 106344774 -43172263 - MTA_Mm LTR MaLR 0 396 1 4 1396 199 405 0 0 chr6 106345349 106345438 -43171599 - MIRc SINE MIR -110 158 70 4 1396 191 336 55 47 chr6 106346049 106346177 -43170860 + MIRb SINE MIR 25 153 -115 4 1396 297 274 117 15 chr6 106346449 106346586 -43170451 - Ricksha_c DNA MuDR -1143 905 755 4 1396 376 347 25 8 chr6 106346590 106346712 -43170325 + B1F SINE Alu 7 130 -19 4 1396 615 296 6 47 chr6 106346738 106346908 -43170129 + RSINE1 SINE B4 2 164 -1 4 1396 5555 164 21 30 chr6 106347404 106348521 -43168516 + L1Md_T LINE L1 99 1205 -5411 4 1396 36290 33 0 0 chr6 106348527 106352944 -43164093 + L1Md_T LINE L1 1170 5586 -297 4 1396 8039 54 0 0 chr6 106352944 106353940 -43163097 + L1Md_T LINE L1 5587 6582 0 4 1396 195 42 0 0 chr6 106353957 106353981 -43163056 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1396 393 292 189 20 chr6 106354793 106354989 -43162048 - MIR SINE MIR -28 234 6 4 1396 252 0 0 0 chr6 106355314 106355342 -43161695 + (GGAGAA)n Simple_repeat Simple_repeat 3 30 0 4 1396 810 120 0 0 chr6 106355342 106355467 -43161570 + (GGA)n Simple_repeat Simple_repeat 1 125 0 5 1396 1287 84 0 0 chr6 106355467 106355645 -43161392 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 1396 276 100 0 0 chr6 106355647 106355687 -43161350 - B1_Mus2 SINE Alu -91 56 17 5 1396 236 250 49 16 chr6 106355653 106355714 -43161323 - B4A SINE B4 -157 135 73 5 1396 675 154 0 0 chr6 106355769 106355886 -43161151 + C-rich Low_complexity Low_complexity 3 119 0 5 1396 390 129 0 0 chr6 106355883 106355945 -43161092 + (TTTCC)n Simple_repeat Simple_repeat 1 62 0 5 1396 829 207 111 19 chr6 106356277 106356484 -43160553 + URR1A DNA MER1_type 1 226 0 5 1396 795 21 0 0 chr6 106356674 106356767 -43160270 + (GA)n Simple_repeat Simple_repeat 2 94 0 5 1396 1233 208 101 9 chr6 106357250 106357527 -43159510 + Lx3B LINE L1 6694 7058 0 5 1396 1271 78 67 0 chr6 106357536 106357716 -43159321 + B2_Mm1t SINE B2 1 192 -1 5 1396 228 67 0 0 chr6 106357716 106357746 -43159291 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1396 23 0 0 0 chr6 106357746 106357769 -43159268 + AT_rich Low_complexity Low_complexity 1 23 0 5 1396 212 271 192 28 chr6 106357956 106358138 -43158899 - MIR SINE MIR 0 262 51 5 1396 966 216 192 55 chr6 106358166 106358324 -43158713 + ORR1D1 LTR MaLR 1 159 -215 5 1396 270 0 0 0 chr6 106358324 106358354 -43158683 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1396 966 216 192 55 chr6 106358354 106358523 -43158514 + ORR1D1 LTR MaLR 160 373 -1 5 1396 249 33 0 0 chr6 106358689 106358719 -43158318 + (TTC)n Simple_repeat Simple_repeat 2 31 0 5 1396 668 266 75 0 chr6 106360196 106360395 -43156642 - B3 SINE B2 -2 214 1 5 1396 214 171 0 0 chr6 106361363 106361398 -43155639 + GA-rich Low_complexity Low_complexity 2 36 0 5 1396 942 96 0 0 chr6 106361407 106361542 -43155495 + (GGAA)n Simple_repeat Simple_repeat 2 136 0 5 1396 2434 126 22 25 chr6 106361748 106362155 -43154882 - Lx LINE L1 0 6654 6249 5 1396 1355 51 6 0 chr6 106362457 106362633 -43154404 + (GAAAA)n Simple_repeat Simple_repeat 3 179 0 5 1396 194 355 159 0 chr6 106363194 106363301 -43153736 + MIR3 SINE MIR 54 177 -31 5 1396 555 353 29 12 chr6 106363309 106363553 -43153484 - MLT1A0 LTR MaLR 0 365 118 5 1396 597 28 0 0 chr6 106365394 106365465 -43151572 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1396 7024 91 19 24 chr6 106365466 106366286 -43150751 - L1_Mus3 LINE L1 -13 6625 5792 5 1396 1161 57 0 0 chr6 106366286 106366427 -43150610 + B1_Mm SINE Alu 1 141 -6 5 1396 7024 100 15 29 chr6 106366427 106366705 -43150332 - L1_Mus3 LINE L1 -92 5791 5532 5 1396 212 354 131 5 chr6 106367196 106367395 -43149642 + L2 LINE L2 2811 3034 -385 5 1396 231 209 43 43 chr6 106367532 106367602 -43149435 - B3A SINE B2 -124 74 5 5 1396 660 278 28 33 chr6 106368553 106368735 -43148302 + B3A SINE B2 2 182 -16 5 1396 1719 249 40 5 chr6 106369028 106369424 -43147613 - MER82 DNA MER2_type -51 602 193 5 1396 547 148 0 76 chr6 106369424 106369556 -43147481 + Lx3C LINE L1 6829 6950 -26 5 1396 501 311 79 0 chr6 106369579 106369756 -43147281 - MER82 DNA MER2_type -460 193 3 5 1396 334 316 129 49 chr6 106369839 106370125 -43146912 + L1M5 LINE L1 5040 5348 -798 5 1396 372 43 0 0 chr6 106370327 106370373 -43146664 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1396 744 305 57 29 chr6 106370575 106370855 -43146182 + B4 SINE B4 1 288 -4 5 1396 1115 84 0 0 chr6 106370983 106371125 -43145912 + B1_Mus2 SINE Alu 1 142 -5 5 1396 260 235 0 45 chr6 106371166 106371255 -43145782 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 1396 302 353 75 30 chr6 106371442 106371678 -43145359 + MIR SINE MIR 23 263 -5 5 1396 5011 99 3 1 chr6 106372122 106372821 -43144216 + L1_Mus4 LINE L1 5932 6631 -5 5 1396 251 313 24 12 chr6 106373669 106373753 -43143284 + LFSINE_Vert SINE SINE 205 289 -170 5 1396 52 41 0 0 chr6 106373939 106374012 -43143025 + AT_rich Low_complexity Low_complexity 1 73 0 5 1396 477 406 19 0 chr6 106374023 106374183 -43142854 - RSINE1 SINE B4 0 165 3 5 1396 231 358 0 24 chr6 106374188 106374271 -43142766 + L2a LINE L2 3312 3392 -34 5 1396 2974 70 67 5 chr6 106374439 106374858 -43142179 - L1_Mus3 LINE L1 -7 6631 6187 5 1396 204 40 0 0 chr6 106375118 106375143 -43141894 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1396 768 336 11 11 chr6 106375143 106375417 -43141620 - B4A SINE B4 -18 274 1 5 1396 1097 153 15 0 chr6 106377677 106377879 -43139158 - L1_Mus3 LINE L1 -6 6632 6428 5 1396 188 459 9 23 chr6 106378522 106378736 -43138301 - L2 LINE L2 -340 3079 2869 5 1396 263 288 61 0 chr6 106380018 106380084 -43136953 + Lx8 LINE L1 7121 7190 -283 5 1396 305 329 94 60 chr6 106380084 106380233 -43136804 + B3A SINE B2 40 193 -5 5 1396 750 309 37 32 chr6 106380453 106380670 -43136367 + ID_B1 SINE B4 2 219 -5 5 1396 642 167 0 0 chr6 106380965 106381121 -43135916 + (TG)n Simple_repeat Simple_repeat 2 157 0 5 1396 541 308 60 43 chr6 106381241 106381475 -43135562 - MIRb SINE MIR 0 268 31 5 1396 381 43 0 0 chr6 106383044 106383091 -43133946 + (TCC)n Simple_repeat Simple_repeat 3 49 0 5 1396 222 253 146 37 chr6 106384370 106384452 -43132585 - MIRb SINE MIR -154 114 24 5 1396 412 315 71 0 chr6 106384691 106384875 -43132162 - B3 SINE B2 -19 197 1 5 1396 1464 225 43 35 chr6 106385227 106385386 -43131651 + ORR1D1 LTR MaLR 27 199 -175 5 1396 2855 89 20 0 chr6 106385386 106385778 -43131259 - MTB LTR MaLR 0 400 1 5 1396 1464 225 43 35 chr6 106385778 106385963 -43131074 + ORR1D1 LTR MaLR 200 374 0 5 1396 213 94 0 0 chr6 106387027 106387059 -43129978 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 5 1396 286 274 0 143 chr6 106387086 106387184 -43129853 + PB1D10 SINE Alu 26 109 -8 5 1396 630 99 0 0 chr6 106387228 106387319 -43129718 + (TA)n Simple_repeat Simple_repeat 1 91 0 5 1396 180 111 0 0 chr6 106387319 106387346 -43129691 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 1396 539 282 107 6 chr6 106387486 106387664 -43129373 + MER3 DNA MER1_type 7 202 -7 5 1396 474 318 70 57 chr6 106388334 106388561 -43128476 - MER21B LTR ERV1 -52 811 582 5 1396 717 266 58 16 chr6 106388808 106388999 -43128038 - B3 SINE B2 -8 208 10 5 1396 679 254 132 0 chr6 106389023 106389212 -43127825 + B3 SINE B2 3 216 0 5 1396 213 213 0 0 chr6 106389416 106389463 -43127574 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1396 650 304 34 24 chr6 106389554 106389763 -43127274 - B4 SINE B4 -74 218 8 5 1396 405 39 0 0 chr6 106391202 106391253 -43125784 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1396 449 268 126 7 chr6 106391587 106391730 -43125307 + MER5A1 DNA MER1_type 1 160 -6 5 1396 306 0 0 0 chr6 106391753 106391787 -43125250 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1396 968 279 18 36 chr6 106392095 106392370 -43124667 + B4A SINE B4 2 271 -21 5 1396 676 327 70 30 chr6 106393844 106394115 -43122922 - B4A SINE B4 -2 290 9 5 1396 202 87 0 42 chr6 106394329 106394377 -43122660 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 5 1396 249 325 0 13 chr6 106394995 106395073 -43121964 - ID4_ SINE ID -6 77 1 5 1396 2308 87 3 27 chr6 106395128 106395459 -43121578 - L1_Mus2 LINE L1 0 6566 6244 5 1396 486 0 0 0 chr6 106395729 106395783 -43121254 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1396 182 189 63 127 chr6 106396575 106396654 -43120383 + L3b LINE CR1 196 269 -213 5 1396 186 43 0 0 chr6 106396877 106396900 -43120137 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1396 35 24 0 0 chr6 106397407 106397449 -43119588 + AT_rich Low_complexity Low_complexity 1 42 0 5 1396 26 74 0 0 chr6 106398393 106398447 -43118590 + AT_rich Low_complexity Low_complexity 1 54 0 5 1396 307 368 28 0 chr6 106398603 106398709 -43118328 - PB1D10 SINE Alu -8 109 1 5 1396 739 216 111 26 chr6 106399140 106399330 -43117707 + B3 SINE B2 2 207 -9 5 1396 858 275 0 0 chr6 106400087 106400254 -43116783 + B3A SINE B2 1 167 -31 5 1396 351 0 0 0 chr6 106400256 106400295 -43116742 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1396 201 74 0 0 chr6 106400791 106400818 -43116219 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 5 1396 255 316 52 17 chr6 106400910 106401084 -43115953 + L1M6 LINE L1 1174 1353 -5143 5 1396 25 31 0 0 chr6 106401236 106401268 -43115769 + AT_rich Low_complexity Low_complexity 1 32 0 5 1396 302 338 0 0 chr6 106401340 106401420 -43115617 + ID4_ SINE ID 2 81 -2 5 1396 455 265 37 162 chr6 106402369 106402585 -43114452 + 7SK RNA RNA 1 189 -142 5 1396 316 152 245 61 chr6 106402582 106402680 -43114357 + 7SK RNA RNA 124 239 -92 5 1396 243 0 0 0 chr6 106403512 106403539 -43113498 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1396 311 376 82 11 chr6 106403563 106403832 -43113205 + B4A SINE B4 1 288 -4 5 1396 705 24 0 0 chr6 106404153 106404236 -43112801 + (TAAAA)n Simple_repeat Simple_repeat 1 83 0 5 1396 344 113 38 0 chr6 106404507 106404560 -43112477 + HAL1-3A_ME LINE L1 1964 2018 -840 5 1396 343 314 0 0 chr6 106404560 106404684 -43112353 + (CA)n Simple_repeat Simple_repeat 1 124 0 5 1396 429 20 0 0 chr6 106406144 106406194 -43110843 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1396 6414 115 29 13 chr6 106406543 106407533 -43109504 - Lx LINE L1 -7 6647 5642 5 1396 253 98 0 47 chr6 106407532 106407575 -43109462 + Lx2B LINE L1 4856 4896 -987 5 1396 2195 122 19 2 chr6 106407571 106407934 -43109103 + Lx2B LINE L1 5273 5642 -1358 5 1396 204 357 120 36 chr6 106409462 106409654 -43107383 + L2 LINE L2 1623 1830 -1589 5 1396 195 42 0 0 chr6 106409744 106409768 -43107269 + (TAA)n Simple_repeat Simple_repeat 2 25 0 5 1396 852 352 76 65 chr6 106409783 106410136 -43106901 + L2 LINE L2 2034 2384 -1035 5 1396 204 40 0 0 chr6 106410136 106410161 -43106876 + (TA)n Simple_repeat Simple_repeat 2 26 0 6 1396 852 352 76 65 chr6 106410161 106410665 -43106372 + L2 LINE L2 2385 2900 -519 5 1396 241 259 0 0 chr6 106411139 106411197 -43105840 - MTEb LTR MaLR 0 379 322 6 1396 929 243 33 116 chr6 106411510 106411881 -43105156 - RMER1B Other Other -277 789 468 6 1396 26 30 0 0 chr6 106411890 106411923 -43105114 + AT_rich Low_complexity Low_complexity 1 33 0 6 1396 526 228 81 0 chr6 106412321 106412444 -43104593 - RSINE1 SINE B4 -28 137 5 6 1396 184 240 114 51 chr6 106412529 106412608 -43104429 - MIRb SINE MIR -80 188 105 6 1396 722 256 0 6 chr6 106412930 106413091 -43103946 - RSINE1 SINE B4 -3 162 3 6 1396 1145 57 0 0 chr6 106413141 106413281 -43103756 + B1_Mm SINE Alu 1 140 -7 6 1396 540 0 0 0 chr6 106413284 106413344 -43103693 + (TAAA)n Simple_repeat Simple_repeat 3 62 0 6 1396 189 161 0 31 chr6 106414393 106414425 -43102612 - MIRc SINE MIR -155 113 83 6 1396 345 266 83 38 chr6 106415133 106415266 -43101771 - B1_Mur2 SINE Alu -9 140 2 6 1396 353 323 32 6 chr6 106416459 106416615 -43100422 - MER117 DNA MER1_type -37 160 1 6 1396 397 327 73 45 chr6 106416620 106416799 -43100238 - MIRc SINE MIR -5 263 80 6 1396 304 167 12 25 chr6 106416921 106416972 -43100065 + polypurine Low_complexity Low_complexity 2 50 0 6 1396 1356 67 0 0 chr6 106416972 106417152 -43099885 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 6 1396 304 167 12 25 chr6 106417152 106417180 -43099857 + polypurine Low_complexity Low_complexity 51 79 0 6 1396 260 208 19 0 chr6 106417183 106417236 -43099801 + GA-rich Low_complexity Low_complexity 3 56 0 6 1396 311 302 93 74 chr6 106417850 106418080 -43098957 - MIRb SINE MIR -1 261 32 6 1396 5245 54 45 1 chr6 106418570 106419251 -43097786 - L1_Mus1 LINE L1 -237 6330 5620 6 1396 1325 42 35 40 chr6 106419251 106419449 -43097588 + L1_Mus1 LINE L1 6370 6566 -1 6 1396 200 189 0 0 chr6 106419787 106419824 -43097213 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1396 280 73 0 52 chr6 106419824 106419882 -43097155 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 6 1396 193 226 56 19 chr6 106420278 106420332 -43096705 + L2 LINE L2 503 558 -2861 6 1396 1960 105 89 3 chr6 106420567 106420892 -43096145 - L1_Mus4 LINE L1 0 6636 6284 6 1396 244 301 12 12 chr6 106421193 106421277 -43095760 + GA-rich Low_complexity Low_complexity 1 84 0 6 1396 22 0 0 0 chr6 106421663 106421685 -43095352 + AT_rich Low_complexity Low_complexity 1 22 0 6 1396 261 196 0 0 chr6 106421735 106421791 -43095246 + (CTG)n Simple_repeat Simple_repeat 1 56 0 6 1396 758 257 141 10 chr6 106421855 106422156 -43094881 + MTEa LTR MaLR 39 379 0 6 1396 742 269 128 55 chr6 106423091 106423512 -43093525 - Lx8 LINE L1 -1286 6187 5736 6 1396 522 0 0 0 chr6 106423531 106423589 -43093448 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1396 401 337 68 23 chr6 106423637 106423813 -43093224 - Charlie16a DNA MER1_type -7 335 152 6 1396 603 27 0 0 chr6 106424173 106424246 -43092791 + (TTCTG)n Simple_repeat Simple_repeat 3 75 0 6 1396 1208 55 0 0 chr6 106424505 106424651 -43092386 - B1_Mus2 SINE Alu 0 147 2 6 1396 6349 15 0 0 chr6 106425037 106425757 -43091280 - L1Md_A LINE L1 0 6582 5863 6 1396 207 0 0 0 chr6 106426191 106426214 -43090823 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6 1396 342 0 0 0 chr6 106426930 106426968 -43090069 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1396 572 363 0 18 chr6 106426972 106427143 -43089894 - B3A SINE B2 -29 169 2 6 1396 1007 98 0 13 chr6 106427246 106427401 -43089636 + (GAAA)n Simple_repeat Simple_repeat 3 155 0 6 1396 3117 137 0 3 chr6 106427622 106428118 -43088919 - Lx7 LINE L1 -1787 5909 5420 6 1396 4817 109 8 12 chr6 106428118 106428862 -43088175 + L1_Mus3 LINE L1 5895 6635 -3 6 1396 396 155 0 0 chr6 106428961 106429032 -43088005 + (TAA)n Simple_repeat Simple_repeat 2 72 0 6 1396 3729 157 19 2 chr6 106429210 106429257 -43087780 + Lx2 LINE L1 5234 5280 -603 6 1396 773 106 28 14 chr6 106429257 106429401 -43087636 + L1_Mus3 LINE L1 6485 6630 -8 6 174 6653 128 35 1 chr6 106429401 106430714 -43086323 + Lx2 LINE L1 5281 6645 -352 6 1397 1207 149 0 5 chr6 106430712 106430907 -43086130 + Lx2 LINE L1 6775 6968 -29 6 1397 22 56 0 0 chr6 106431097 106431133 -43085904 + AT_rich Low_complexity Low_complexity 1 36 0 6 1397 237 65 0 0 chr6 106432492 106432523 -43084514 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1397 278 274 119 0 chr6 106432940 106433024 -43084013 + PB1 SINE Alu 24 117 -10 6 1397 1257 327 24 13 chr6 106433233 106433608 -43083429 - MTEa LTR MaLR 0 379 1 6 1397 3492 279 31 144 chr6 106433611 106435154 -43081883 - MTEa-int LTR MaLR -13 1567 200 6 1397 828 332 58 17 chr6 106435186 106435425 -43081612 - ORR1D2 LTR MaLR -2 368 118 6 1397 266 246 16 32 chr6 106435425 106435488 -43081549 - RLTR20B3 LTR ERVK 0 577 516 6 1397 600 14 0 0 chr6 106435488 106435557 -43081480 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1397 2103 182 80 7 chr6 106435558 106435995 -43081042 - RLTR20B3 LTR ERVK -108 469 1 6 1397 724 171 109 0 chr6 106435995 106436170 -43080867 - MYSERV16_I-int LTR ERVK 0 2326 2133 6 1397 570 15 0 0 chr6 106436241 106436308 -43080729 + (CTTG)n Simple_repeat Simple_repeat 2 68 0 6 1397 509 319 39 19 chr6 106436311 106436519 -43080518 - ID_B1 SINE B4 -12 212 1 6 1397 24 0 0 0 chr6 106437135 106437159 -43079878 + AT_rich Low_complexity Low_complexity 1 24 0 6 1397 204 97 0 0 chr6 106437356 106437387 -43079650 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6 1397 28 29 0 0 chr6 106437447 106437482 -43079555 + AT_rich Low_complexity Low_complexity 1 35 0 6 1397 630 310 105 0 chr6 106437484 106437655 -43079382 - B3 SINE B2 -22 194 6 6 1397 310 213 26 181 chr6 106437872 106438027 -43079010 - RMER15 LTR ERVL -436 139 9 6 1397 255 284 82 21 chr6 106441112 106441127 -43075910 - B4A SINE B4 -188 104 2 6 1397 390 281 0 0 chr6 106441127 106441209 -43075828 - ID4 SINE ID 0 83 2 6 1397 216 316 26 0 chr6 106441390 106441466 -43075571 - L2a LINE L2 0 3426 3349 6 1397 194 368 84 55 chr6 106441507 106441780 -43075257 + L2 LINE L2 2536 2816 -603 6 1397 767 142 43 0 chr6 106441856 106441997 -43075040 + URR1A DNA MER1_type 79 225 -1 6 1397 627 280 19 6 chr6 106443694 106443852 -43073185 + B3A SINE B2 28 187 -11 6 1397 233 71 84 14 chr6 106444112 106444183 -43072854 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 1397 237 333 97 10 chr6 106445665 106445768 -43071269 + MIR3 SINE MIR 67 178 -30 6 1397 405 278 69 9 chr6 106447015 106447131 -43069906 - RSINE1 SINE B4 -41 124 2 6 1397 397 262 110 52 chr6 106447770 106447943 -43069094 + MER58A DNA MER1_type 37 219 -5 6 1397 1295 205 114 14 chr6 106448469 106448766 -43068271 + MTD LTR MaLR 1 327 -92 6 1397 306 50 0 0 chr6 106448781 106448821 -43068216 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1397 257 253 51 0 chr6 106448822 106448901 -43068136 + MTD LTR MaLR 336 418 -1 6 1397 1066 36 0 0 chr6 106448936 106449073 -43067964 + L1Md_T LINE L1 6446 6582 0 6 1397 276 298 95 41 chr6 106449703 106449831 -43067206 + MER5A DNA MER1_type 2 136 -30 6 1397 1488 218 63 38 chr6 106450324 106450691 -43066346 + Lx5 LINE L1 6675 7050 0 6 1397 204 152 22 0 chr6 106451633 106451679 -43065358 + A-rich Low_complexity Low_complexity 5 51 0 6 1397 334 310 10 39 chr6 106452152 106452256 -43064781 + MLT1C LTR MaLR 51 151 -316 6 1397 652 297 74 53 chr6 106452264 106452694 -43064343 - BGLII_B LTR ERVK -2 439 1 6 1397 259 296 98 108 chr6 106452694 106452914 -43064123 + MLT1C LTR MaLR 218 467 0 6 1397 363 272 69 126 chr6 106452926 106453057 -43063980 + L1MB8 LINE L1 5767 5903 -275 6 1397 731 298 14 5 chr6 106453057 106453266 -43063771 + B3 SINE B2 1 211 -5 6 1397 363 272 69 126 chr6 106453266 106453554 -43063483 + L1MB8 LINE L1 5904 6162 -16 6 1397 736 261 14 167 chr6 106454664 106454880 -43062157 + B3 SINE B2 11 210 -6 6 1397 315 0 0 0 chr6 106455294 106455329 -43061708 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1397 325 0 44 0 chr6 106457026 106457071 -43059966 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1397 186 71 0 0 chr6 106458211 106458239 -43058798 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1397 665 340 102 24 chr6 106458534 106459015 -43058022 - MLT1H1 LTR MaLR -36 618 1 6 1397 273 167 0 0 chr6 106459875 106459929 -43057108 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1397 222 37 0 0 chr6 106460307 106460334 -43056703 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 6 1397 692 200 0 15 chr6 106460347 106460479 -43056558 - B1_Mur2 SINE Alu -18 131 2 6 1397 308 328 206 12 chr6 106463114 106463361 -43053676 - L2 LINE L2 -512 2907 2613 6 1397 373 351 78 28 chr6 106463476 106463655 -43053382 - MER5A DNA MER1_type -1 188 1 6 1397 184 309 70 42 chr6 106464116 106464187 -43052850 - MIR3 SINE MIR -53 155 83 6 1397 2075 81 0 0 chr6 106465103 106465398 -43051639 + L1_Mus4 LINE L1 5694 5988 -648 6 1397 439 293 24 129 chr6 106465515 106465770 -43051267 + Lx8 LINE L1 7244 7471 -2 6 1397 689 280 25 6 chr6 106466312 106466470 -43050567 - B3 SINE B2 -8 208 48 6 1397 640 285 25 45 chr6 106466712 106466914 -43050123 + B3A SINE B2 1 198 0 6 1397 2343 120 63 5 chr6 106467037 106467415 -43049622 - Lx LINE L1 0 6654 6255 6 1397 7553 122 21 14 chr6 106467427 106468608 -43048429 - Lx2 LINE L1 -8 6989 5800 6 1397 558 75 0 0 chr6 106470007 106470087 -43046950 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 1397 801 336 46 8 chr6 106470090 106470351 -43046686 - B4 SINE B4 -14 278 8 6 1397 5009 62 19 2 chr6 106472512 106473155 -43043882 - L1_Mus1 LINE L1 0 6567 5914 6 1397 612 0 0 0 chr6 106474443 106474511 -43042526 + (TG)n Simple_repeat Simple_repeat 2 69 0 6 1397 641 248 45 0 chr6 106474690 106474823 -43042214 - B1_Mur1 SINE Alu -2 147 9 6 1397 2263 123 42 3 chr6 106475760 106476117 -43040920 - Lx2 LINE L1 0 6997 6627 6 1397 228 327 126 15 chr6 106476687 106476824 -43040213 + L2a LINE L2 3211 3422 -4 6 1397 26 64 0 0 chr6 106478226 106478273 -43038764 + AT_rich Low_complexity Low_complexity 1 47 0 7 1397 237 33 0 0 chr6 106478629 106478659 -43038378 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1397 1334 205 58 10 chr6 106478999 106479303 -43037734 + Lx3C LINE L1 6649 6968 -8 7 1397 258 81 0 0 chr6 106479303 106479340 -43037697 + (TAA)n Simple_repeat Simple_repeat 3 39 0 7 1397 180 0 0 0 chr6 106480191 106480211 -43036826 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1397 248 256 100 8 chr6 106482389 106482519 -43034518 + L1M3d LINE L1 1089 1230 -4661 7 1397 630 0 0 0 chr6 106482556 106482626 -43034411 + (GAAAA)n Simple_repeat Simple_repeat 2 71 0 7 1397 361 328 58 27 chr6 106482677 106483088 -43033949 + L1MB2 LINE L1 1312 1735 -4649 7 1397 463 302 104 49 chr6 106483239 106483585 -43033452 + L1MB2 LINE L1 2023 2385 -3999 7 1397 6387 55 12 0 chr6 106483585 106484386 -43032651 + L1_Mus1 LINE L1 5756 6566 -1 7 1397 463 302 104 49 chr6 106484386 106484470 -43032567 + L1MB2 LINE L1 2386 2476 -3908 7 1397 811 226 105 0 chr6 106484477 106484667 -43032370 + B3 SINE B2 1 210 -6 7 1397 2130 286 150 26 chr6 106484688 106484792 -43032245 + L1MB2 LINE L1 2577 2691 -3685 7 1397 198 0 0 0 chr6 106484792 106484814 -43032223 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1397 2130 286 150 26 chr6 106484814 106486678 -43030359 + L1MB2 LINE L1 2692 4788 -1588 7 1397 478 305 0 113 chr6 106486942 106487127 -43029910 + RSINE1 SINE B4 2 165 0 7 1397 225 288 0 0 chr6 106487165 106487224 -43029813 + L1MB2 LINE L1 5141 5199 -1177 7 1397 940 296 77 24 chr6 106487643 106488257 -43028780 + L1MB2 LINE L1 5754 6399 -8 7 1397 924 89 73 15 chr6 106489174 106489311 -43027726 + B1_Mm SINE Alu 1 145 -2 7 1397 317 267 58 35 chr6 106489509 106489660 -43027377 + MER63D DNA AcHobo 322 402 -659 7 1397 375 331 63 16 chr6 106490015 106490141 -43026896 + ID_B1 SINE B4 1 132 -92 7 1397 1866 134 85 103 chr6 106490142 106490507 -43026530 - Lx LINE L1 -6 6648 6287 7 1397 1309 85 21 5 chr6 106490507 106490697 -43026340 - B2_Mm2 SINE B2 -2 193 1 7 1397 1866 134 85 103 chr6 106490697 106490779 -43026258 - Lx LINE L1 -368 6286 6209 7 1397 318 269 25 13 chr6 106490779 106490858 -43026179 + ID_B1 SINE B4 143 222 -2 7 1397 313 252 110 31 chr6 106491566 106491693 -43025344 + L1MD1 LINE L1 5878 6014 -228 7 1397 1018 234 42 172 chr6 106492127 106492534 -43024503 - MTE2a LTR MaLR -6 373 20 7 1397 232 326 70 0 chr6 106494517 106494603 -43022434 + Tigger9a DNA Tigger 2 93 -639 7 1397 1052 186 51 5 chr6 106494614 106494809 -43022228 + URR1A DNA MER1_type 7 210 -16 7 1397 372 22 0 0 chr6 106495024 106495069 -43021968 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1397 6876 35 6 9 chr6 106495179 106496068 -43020969 + L1Md_F2 LINE L1 4701 5586 -297 7 1397 8428 25 4 0 chr6 106496068 106497057 -43019980 + L1Md_F2 LINE L1 5587 6579 -3 7 1397 268 348 27 47 chr6 106497554 106497702 -43019335 + ID_B1 SINE B4 79 223 -1 7 1397 737 296 11 5 chr6 106497828 106498018 -43019019 + B3 SINE B2 1 191 -25 7 1397 6615 51 33 3 chr6 106498018 106498900 -43018137 + L1Md_F2 LINE L1 5640 6547 -35 7 1397 762 32 0 0 chr6 106498900 106498993 -43018044 + (GAA)n Simple_repeat Simple_repeat 1 93 0 7 1397 28 0 0 0 chr6 106498996 106499024 -43018013 + AT_rich Low_complexity Low_complexity 1 28 0 7 1397 213 39 0 0 chr6 106499301 106499327 -43017710 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 7 1397 520 138 16 16 chr6 106499607 106499732 -43017305 + (CAGA)n Simple_repeat Simple_repeat 4 128 0 7 1397 337 228 0 0 chr6 106499735 106499903 -43017134 + GA-rich Low_complexity Low_complexity 1 168 0 7 1397 24 0 0 0 chr6 106500521 106500545 -43016492 + AT_rich Low_complexity Low_complexity 1 24 0 1 1397 503 108 0 24 chr6 106500634 106500719 -43016318 + (TCC)n Simple_repeat Simple_repeat 3 85 0 2 1397 422 164 118 12 chr6 106500737 106500817 -43016220 - RMER17C LTR ERVK -138 272 189 3 1397 1204 55 12 0 chr6 106500817 106500982 -43016055 + (GAGAA)n Simple_repeat Simple_repeat 4 170 0 4 1397 422 164 118 12 chr6 106500982 106501062 -43015975 - RMER17C LTR ERVK -222 188 96 3 1397 206 273 0 0 chr6 106501227 106501271 -43015766 - L3 LINE CR1 -302 4187 4144 5 1397 23 33 0 0 chr6 106501956 106501986 -43015051 + AT_rich Low_complexity Low_complexity 1 30 0 6 1397 230 301 27 14 chr6 106502127 106502201 -43014836 - RMER15 LTR ERVL -108 467 393 7 1397 315 253 30 40 chr6 106502207 106502306 -43014731 - Lx8 LINE L1 -255 7218 7121 8 1397 701 294 27 23 chr6 106502345 106502603 -43014434 - Lx8 LINE L1 -469 7004 6746 8 1397 2159 175 47 5 chr6 106502775 106503177 -43013860 + Lx2B LINE L1 6577 6995 -5 9 1397 478 295 28 21 chr6 106503229 106503371 -43013666 + B3A SINE B2 40 182 -16 1 1397 300 152 0 0 chr6 106503371 106503437 -43013600 + GA-rich Low_complexity Low_complexity 1 66 0 1 1397 798 103 0 0 chr6 106507942 106508058 -43008979 - URR1B DNA MER1_type 0 225 110 1 1397 315 324 51 81 chr6 106508326 106508561 -43008476 - L3 LINE CR1 -228 4261 4034 1 1397 330 351 28 34 chr6 106508679 106508856 -43008181 + Tigger15a DNA TcMar 532 707 -8 1 1397 1738 120 66 34 chr6 106508864 106509244 -43007793 - RMER17C LTR ERVK 0 410 19 1 1397 237 336 72 9 chr6 106509490 106509601 -43007436 - MIRm SINE MIR -1 275 158 1 1397 834 286 0 0 chr6 106510136 106510307 -43006730 + B3 SINE B2 1 171 -45 1 1397 270 291 135 10 chr6 106510409 106510513 -43006524 - MLT1D LTR MaLR -137 368 252 1 1397 24 0 0 0 chr6 106511072 106511096 -43005941 + AT_rich Low_complexity Low_complexity 1 24 0 1 1397 1130 75 0 7 chr6 106511238 106511385 -43005652 + B1_Mus2 SINE Alu 2 147 0 2 1397 593 279 121 98 chr6 106513038 106513376 -43003661 + ORR1E LTR MaLR 9 354 -5 2 1397 228 118 78 0 chr6 106513541 106513592 -43003445 + A-rich Low_complexity Low_complexity 2 56 0 2 1397 400 178 40 34 chr6 106514161 106514336 -43002701 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 2 1397 192 135 0 0 chr6 106514404 106514441 -43002596 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1397 1236 130 120 0 chr6 106514562 106514762 -43002275 + URR1A DNA MER1_type 2 225 -1 2 1397 237 281 115 8 chr6 106514784 106514906 -43002131 - Charlie11 DNA MER1_type -611 1585 1451 2 1397 438 350 62 13 chr6 106514959 106515185 -43001852 + MER58B DNA MER1_type 99 335 -6 2 1397 249 33 0 0 chr6 106517496 106517526 -42999511 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1397 448 114 9 62 chr6 106517878 106517990 -42999047 + GA-rich Low_complexity Low_complexity 1 106 0 2 1397 1400 39 0 11 chr6 106517990 106518170 -42998867 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 1397 523 330 55 20 chr6 106518285 106518486 -42998551 + MER63A DNA AcHobo 2 209 -1 3 1397 306 125 0 0 chr6 106518809 106518857 -42998180 + (GGA)n Simple_repeat Simple_repeat 1 48 0 3 1397 364 267 144 17 chr6 106519117 106519235 -42997802 + B3 SINE B2 2 134 -82 3 1397 447 68 0 0 chr6 106519251 106519310 -42997727 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1397 1724 140 66 7 chr6 106519497 106519784 -42997253 + Lx3B LINE L1 6665 6968 -5 3 1397 593 147 53 6 chr6 106519818 106519989 -42997048 + GA-rich Low_complexity Low_complexity 1 179 0 3 1397 244 359 29 0 chr6 106520044 106520147 -42996890 - ORR1E LTR MaLR -231 128 23 3 1397 800 178 14 0 chr6 106520345 106520491 -42996546 + URR1B DNA MER1_type 78 225 0 3 1397 233 358 78 54 chr6 106520937 106521268 -42995769 + L2 LINE L2 2432 2770 -649 3 1397 643 296 134 78 chr6 106521363 106521722 -42995315 - MTEa LTR MaLR 0 379 1 4 1397 776 225 40 0 chr6 106522196 106522369 -42994668 + B3A SINE B2 3 182 -16 4 1397 187 197 0 57 chr6 106522393 106522463 -42994574 + (CATA)n Simple_repeat Simple_repeat 3 68 0 4 1397 21 0 0 0 chr6 106523028 106523049 -42993988 + AT_rich Low_complexity Low_complexity 1 21 0 4 1397 237 270 39 225 chr6 106523262 106523310 -42993727 + B1F2 SINE Alu 38 142 -7 4 1397 404 247 0 0 chr6 106523310 106523391 -42993646 + ID_B1 SINE B4 137 217 -7 4 1397 581 344 20 20 chr6 106523612 106523811 -42993226 + Tigger5 DNA MER2_type 46 244 -2162 4 1397 23 68 0 0 chr6 106523921 106523965 -42993072 + AT_rich Low_complexity Low_complexity 1 44 0 4 1397 182 91 0 29 chr6 106524574 106524591 -42992446 + (CAAA)n Simple_repeat Simple_repeat 2 18 0 4 1397 1049 147 0 0 chr6 106524591 106524741 -42992296 + B1_Mur4 SINE Alu 1 150 0 4 1397 182 91 0 29 chr6 106524741 106524757 -42992280 + (CAAA)n Simple_repeat Simple_repeat 3 18 0 5 1397 255 408 39 0 chr6 106525162 106525265 -42991772 - LTR16A LTR ERVL -154 297 191 5 1397 185 250 25 0 chr6 106526096 106526176 -42990861 + (CATA)n Simple_repeat Simple_repeat 1 82 0 5 1397 1643 159 141 30 chr6 106526208 106526386 -42990651 + RMER17C LTR ERVK 1 180 -230 5 1397 576 0 0 0 chr6 106526386 106526450 -42990587 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1397 210 71 0 0 chr6 106526451 106526479 -42990558 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1397 1643 159 141 30 chr6 106526479 106526667 -42990370 + RMER17C LTR ERVK 181 410 0 5 1397 352 379 14 7 chr6 106527359 106527500 -42989537 - RSINE1 SINE B4 -13 152 11 5 1397 294 333 101 53 chr6 106527599 106527808 -42989229 + Charlie8 DNA MER1_type 122 340 -2088 5 1397 711 276 50 25 chr6 106527828 106527937 -42989100 + B3 SINE B2 1 108 -108 5 1397 1029 186 102 10 chr6 106527937 106528143 -42988894 + URR1A DNA MER1_type 2 226 0 5 1397 711 276 50 25 chr6 106528143 106528234 -42988803 + B3 SINE B2 109 206 -10 5 1397 837 158 7 20 chr6 106528246 106528395 -42988642 - B1_Mus1 SINE Alu 0 148 2 6 1397 22 0 0 0 chr6 106528568 106528590 -42988447 + AT_rich Low_complexity Low_complexity 1 22 0 6 1397 515 259 158 31 chr6 106528813 106529022 -42988015 - MT2A LTR ERVL 0 567 319 6 1397 249 208 88 38 chr6 106529641 106529721 -42987316 - MT2A LTR ERVL -449 84 1 6 1397 465 141 0 0 chr6 106529744 106529829 -42987208 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 1397 288 242 121 64 chr6 106531028 106531169 -42985868 - B3 SINE B2 0 216 68 6 1397 673 316 8 8 chr6 106532644 106532814 -42984223 - B3 SINE B2 -29 164 4 6 1397 24 0 0 0 chr6 106533321 106533345 -42983692 + AT_rich Low_complexity Low_complexity 1 24 0 6 1397 468 351 82 64 chr6 106533692 106534146 -42982891 + L2 LINE L2 1978 2439 -980 6 1397 192 207 15 108 chr6 106534295 106534360 -42982677 - L2a LINE L2 0 3426 3368 6 1397 1564 208 34 48 chr6 106535860 106536239 -42980798 - ORR1D1 LTR MaLR 0 374 1 6 1397 915 286 70 31 chr6 106536568 106537210 -42979827 + L1MB4 LINE L1 5513 6179 -1 7 1397 307 280 19 11 chr6 106537385 106537478 -42979559 + PB1D10 SINE Alu 6 111 -9 7 1397 411 38 0 0 chr6 106537490 106537543 -42979494 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1397 327 65 0 0 chr6 106537543 106537589 -42979448 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1397 634 339 89 36 chr6 106537680 106538377 -42978660 - L1MA9 LINE L1 -222 6090 5357 7 1397 241 316 0 41 chr6 106538388 106538510 -42978527 - L1MA9 LINE L1 -1023 5117 5001 7 1397 291 171 26 13 chr6 106538604 106538681 -42978356 + GA-rich Low_complexity Low_complexity 3 80 0 7 1397 233 313 96 67 chr6 106538919 106539097 -42977940 + MamRep605 Unknown Unknown 577 759 -117 7 1397 487 324 60 16 chr6 106539730 106539912 -42977125 + B3A SINE B2 3 192 -6 7 1397 274 311 162 18 chr6 106540461 106540628 -42976409 + MTEb LTR MaLR 20 210 -149 7 1397 344 349 40 29 chr6 106540797 106540971 -42976066 + MTEb LTR MaLR 204 379 0 7 1397 802 219 90 11 chr6 106540994 106541183 -42975854 - B3 SINE B2 -12 204 1 7 1397 360 269 48 9 chr6 106542165 106542270 -42974767 + PB1D10 SINE Alu 9 117 0 8 1397 28 0 0 0 chr6 106542298 106542326 -42974711 + AT_rich Low_complexity Low_complexity 1 28 0 8 1397 1084 68 7 20 chr6 106542765 106542915 -42974122 - B1_Mus1 SINE Alu 0 148 1 8 1397 386 269 76 57 chr6 106544529 106544653 -42972384 + RSINE1 SINE B4 5 135 -30 8 1397 204 40 0 0 chr6 106544653 106544678 -42972359 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1397 386 269 76 57 chr6 106544678 106544711 -42972326 + RSINE1 SINE B4 136 165 0 8 1397 359 263 74 37 chr6 106544853 106545015 -42972022 + RMER5 LTR ERV1 1 168 -366 8 1397 900 312 67 52 chr6 106545062 106545390 -42971647 + MTD LTR MaLR 56 388 -31 8 1397 288 307 71 42 chr6 106545526 106545738 -42971299 + L1_Mur3 LINE L1 5314 5557 -323 8 1397 216 333 77 57 chr6 106545758 106545840 -42971197 - B3A SINE B2 0 198 1 8 1397 429 288 0 9 chr6 106545840 106545952 -42971085 - RSINE1 SINE B4 -53 112 2 8 1397 204 40 0 0 chr6 106546002 106546027 -42971010 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 9 1397 3211 48 2 2 chr6 106546606 106547002 -42970035 + MTA_Mm LTR MaLR 1 396 0 9 1397 582 82 0 0 chr6 106547709 106547794 -42969243 + (TG)n Simple_repeat Simple_repeat 2 86 0 9 1397 927 297 23 60 chr6 106547846 106548147 -42968890 - B4 SINE B4 0 292 3 9 1397 531 0 0 0 chr6 106550768 106550827 -42966210 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1397 1965 213 98 18 chr6 106550841 106551333 -42965704 - RMER15 LTR ERVL -18 557 27 9 1397 974 340 3 18 chr6 106551429 106551713 -42965324 - B4A SINE B4 -12 280 1 9 1397 21 36 0 0 chr6 106552759 106552787 -42964250 + AT_rich Low_complexity Low_complexity 1 28 0 9 1397 455 258 239 53 chr6 106553018 106553206 -42963831 - B4A SINE B4 -68 224 2 9 1397 246 310 95 34 chr6 106553694 106553841 -42963196 + MER113 DNA MER1_type 231 386 -135 9 1397 696 251 44 20 chr6 106554083 106554286 -42962751 - B3 SINE B2 -8 208 1 1 1397 1340 235 23 15 chr6 106556513 106556867 -42960170 + ORR1D1 LTR MaLR 1 359 -19 1 1397 490 341 41 76 chr6 106556925 106557293 -42959744 + ORR1E LTR MaLR 1 355 -4 1 1397 1887 199 93 77 chr6 106557372 106557943 -42959094 - RLTR31A_Mm LTR ERVK -4 580 1 1 1397 22 0 0 0 chr6 106558052 106558074 -42958963 + AT_rich Low_complexity Low_complexity 1 22 0 1 1397 751 245 25 30 chr6 106558074 106558272 -42958765 - B3 SINE B2 -19 197 1 1 1397 2191 178 42 14 chr6 106558710 106559211 -42957826 + RMER4B LTR ERVK 36 585 0 1 1397 254 304 46 153 chr6 106559220 106559461 -42957576 + MLT1C LTR MaLR 177 391 -76 1 1397 254 337 23 0 chr6 106559475 106559561 -42957476 + MLT1C LTR MaLR 363 450 -17 1 1397 818 244 21 5 chr6 106561102 106561296 -42955741 + B3 SINE B2 1 197 -19 1 1397 186 43 0 0 chr6 106561297 106561320 -42955717 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1397 30 27 0 0 chr6 106561320 106561357 -42955680 + AT_rich Low_complexity Low_complexity 1 37 0 1 1398 21 71 0 0 chr6 106561825 106561867 -42955170 + AT_rich Low_complexity Low_complexity 1 42 0 1 1398 491 311 84 70 chr6 106562214 106562498 -42954539 + B4A SINE B4 1 288 -4 1 1398 749 306 104 25 chr6 106563370 106563688 -42953349 - RMER15 LTR ERVL -13 562 220 1 1398 397 204 50 28 chr6 106564181 106564322 -42952715 + Lx2B LINE L1 6855 6998 -2 1 1398 24 0 0 0 chr6 106564598 106564622 -42952415 + AT_rich Low_complexity Low_complexity 1 24 0 1 1398 335 250 185 0 chr6 106566647 106566739 -42950298 + PB1D10 SINE Alu 2 110 -7 1 1398 225 0 0 0 chr6 106567120 106567145 -42949892 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1398 316 329 0 2 chr6 106567417 106567529 -42949508 - L2b LINE L2 -290 3085 2975 1 1398 285 29 0 0 chr6 106567562 106567596 -42949441 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1398 948 308 0 21 chr6 106567651 106567933 -42949104 - B4 SINE B4 -16 276 1 1 1398 222 324 0 27 chr6 106569185 106569258 -42947779 - MIRc SINE MIR -161 107 37 1 1398 209 319 56 0 chr6 106569897 106569969 -42947068 + MIRc SINE MIR 22 97 -171 1 1398 21 0 0 0 chr6 106570108 106570129 -42946908 + AT_rich Low_complexity Low_complexity 1 21 0 1 1398 210 310 197 0 chr6 106570629 106570700 -42946337 + B4 SINE B4 95 179 -113 1 1398 264 269 21 21 chr6 106570763 106570858 -42946179 + (CATA)n Simple_repeat Simple_repeat 4 98 0 1 1398 564 267 0 0 chr6 106570876 106570996 -42946041 + ID_B1 SINE B4 98 217 -7 1 1398 383 0 21 0 chr6 106570996 106571043 -42945994 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1398 251 309 40 67 chr6 106571043 106571071 -42945966 + B4A SINE B4 221 245 -47 1 1398 612 331 67 61 chr6 106572800 106573112 -42943925 + MER58B DNA MER1_type 4 317 -24 1 1398 579 164 0 0 chr6 106573179 106573283 -42943754 + (TATATG)n Simple_repeat Simple_repeat 2 105 0 1 1398 252 0 0 0 chr6 106574105 106574133 -42942904 + (TAG)n Simple_repeat Simple_repeat 3 30 0 1 1398 1871 170 97 8 chr6 106574196 106574558 -42942479 + ORR1B1 LTR MaLR 1 394 0 1 1398 224 245 19 19 chr6 106577609 106577663 -42939374 + L4 LINE RTE 982 1035 -994 1 1398 183 324 29 14 chr6 106578092 106578161 -42938876 + MER5A DNA MER1_type 76 145 -44 1 1398 187 328 0 32 chr6 106578116 106578179 -42938858 - MER5A DNA MER1_type -91 98 38 1 1398 702 342 72 67 chr6 106578296 106578614 -42938423 - MLT1A1 LTR MaLR 0 408 85 1 1398 651 265 10 56 chr6 106578614 106578810 -42938227 - B3A SINE B2 -11 187 1 1 1398 702 342 72 67 chr6 106578810 106578877 -42938160 - MLT1A1 LTR MaLR -324 84 21 1 1398 271 341 198 55 chr6 106578878 106579612 -42937425 + L3 LINE CR1 3486 4324 -165 1 1398 776 278 76 62 chr6 106580966 106581242 -42935795 - B4 SINE B4 -12 280 1 1 1398 252 0 0 0 chr6 106582178 106582206 -42934831 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1398 875 192 14 0 chr6 106582302 106582448 -42934589 + B1_Mur2 SINE Alu 2 149 0 1 1398 21 0 0 0 chr6 106582449 106582470 -42934567 + AT_rich Low_complexity Low_complexity 1 21 0 1 1398 583 266 50 7 chr6 106582504 106582644 -42934393 + B3A SINE B2 5 150 -48 1 1398 264 408 26 39 chr6 106582654 106582807 -42934230 + MIRb SINE MIR 1 151 -117 1 1398 243 209 56 28 chr6 106584612 106584720 -42932317 + L1MA7 LINE L1 6174 6284 -7 1 1398 499 278 16 42 chr6 106584940 106585100 -42931937 + B4A SINE B4 3 155 -69 1 1398 239 179 15 0 chr6 106585131 106585198 -42931839 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1398 342 0 0 0 chr6 106585276 106585314 -42931723 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1398 292 345 13 40 chr6 106585330 106585481 -42931556 + B4 SINE B4 144 290 -2 1 1398 4662 75 25 0 chr6 106585542 106586196 -42930841 + L1_Mus3 LINE L1 5696 6365 -273 1 1398 2353 104 3 3 chr6 106586356 106586683 -42930354 - ORR1A2 LTR MaLR 0 327 1 1 1398 882 112 0 0 chr6 106586683 106586843 -42930194 + (TG)n Simple_repeat Simple_repeat 2 161 0 1 1398 204 118 0 29 chr6 106587116 106587151 -42929886 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1 1398 1198 48 0 0 chr6 106587161 106587306 -42929731 - B1_Mus1 SINE Alu -2 146 2 1 1398 426 292 32 69 chr6 106587370 106587548 -42929489 + MTE2a LTR MaLR 57 240 -179 1 1398 777 277 26 25 chr6 106587526 106587767 -42929270 + MTE2a LTR MaLR 179 415 -4 1 1398 680 111 9 0 chr6 106587816 106587924 -42929113 + (TCC)n Simple_repeat Simple_repeat 3 111 0 1 1398 392 298 50 6 chr6 106588022 106588204 -42928833 - HAL1 LINE L1 -856 1651 1462 1 1398 362 362 174 60 chr6 106588213 106588818 -42928219 - HAL1 LINE L1 -1749 758 85 1 1398 368 154 39 0 chr6 106589096 106589174 -42927863 - L1Md_F3 LINE L1 -3 6581 6501 1 1398 540 0 0 0 chr6 106590325 106590385 -42926652 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1398 788 309 97 73 chr6 106590385 106590892 -42926145 + Lx8 LINE L1 6955 7473 0 1 1398 315 358 123 9 chr6 106590894 106591114 -42925923 - MIR SINE MIR -6 256 12 1 1398 545 93 9 27 chr6 106591674 106591784 -42925253 + (TG)n Simple_repeat Simple_repeat 1 108 0 1 1398 194 354 20 40 chr6 106592058 106592158 -42924879 - L2c LINE L2 -14 3373 3276 1 1398 648 310 57 21 chr6 106592751 106593031 -42924006 - B4A SINE B4 -2 290 1 1 1398 405 0 0 0 chr6 106597732 106597777 -42919260 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1398 331 326 41 0 chr6 106597885 106597983 -42919054 + PB1D10 SINE Alu 9 110 -7 1 1398 1180 89 6 11 chr6 106597984 106598165 -42918872 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1398 800 92 8 0 chr6 106598165 106598284 -42918753 + (GGAA)n Simple_repeat Simple_repeat 2 121 0 1 1398 462 36 0 0 chr6 106598658 106598714 -42918323 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1398 575 319 159 9 chr6 106598715 106598949 -42918088 - B4A SINE B4 -23 269 1 1 1398 5321 34 0 0 chr6 106599222 106599847 -42917190 - L1Md_T LINE L1 0 6582 5958 1 1398 412 18 35 0 chr6 106600170 106600227 -42916810 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1398 283 331 8 0 chr6 106600237 106600367 -42916670 + L1MC4 LINE L1 6724 6854 -1028 1 1398 657 0 0 0 chr6 106600512 106600585 -42916452 + (TC)n Simple_repeat Simple_repeat 1 73 0 1 1398 439 285 54 47 chr6 106600625 106600901 -42916136 + L1MC4 LINE L1 6863 7140 -902 1 1398 249 358 159 16 chr6 106601133 106601391 -42915646 - L3 LINE CR1 -87 4402 4108 1 1398 406 297 9 9 chr6 106601449 106601561 -42915476 - L3 LINE CR1 -511 3978 3867 1 1398 531 0 0 0 chr6 106602147 106602206 -42914831 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1398 473 362 84 62 chr6 106602307 106602581 -42914456 + B4 SINE B4 1 280 -12 1 1398 283 191 40 13 chr6 106602800 106602949 -42914088 + (TA)n Simple_repeat Simple_repeat 1 153 0 1 1398 644 189 45 0 chr6 106602986 106603097 -42913940 - B1_Mur2 SINE Alu -32 117 2 1 1398 302 327 31 75 chr6 106603097 106603141 -42913896 - MT2B LTR ERVL -330 267 120 1 1398 596 273 64 38 chr6 106603141 106603377 -42913660 - L1MA4A LINE L1 -385 5918 5677 1 1398 21 57 0 0 chr6 106604280 106604315 -42912722 + AT_rich Low_complexity Low_complexity 1 35 0 1 1398 2147 203 12 51 chr6 106604680 106605173 -42911864 + Lx2B LINE L1 6525 6998 -2 1 1398 726 53 0 0 chr6 106605188 106605283 -42911754 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 1398 234 354 0 71 chr6 106605390 106605475 -42911562 - ID4 SINE ID -3 80 2 1 1398 742 260 29 0 chr6 106606622 106606795 -42910242 - MER105 DNA DNA -25 179 2 1 1398 1167 158 216 109 chr6 106606854 106607174 -42909863 - ORR1B1 LTR MaLR 0 394 41 1 1398 965 60 120 1 chr6 106607486 106607640 -42909397 + Lx LINE L1 5682 5855 -1618 1 1398 425 38 0 0 chr6 106607633 106607686 -42909351 - Lx2B LINE L1 -448 6552 6500 1 1398 4995 102 24 34 chr6 106607727 106608545 -42908492 + L1_Mus4 LINE L1 5827 6636 0 1 1398 1138 49 35 0 chr6 106608553 106608695 -42908342 + B1_Mus2 SINE Alu 1 147 0 1 1398 321 89 0 0 chr6 106608695 106608740 -42908297 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1398 294 287 185 0 chr6 106608932 106609040 -42907997 + B1F1 SINE Alu 9 136 -13 1 1398 3289 113 71 0 chr6 106609627 106609683 -42907354 - Lx2B LINE L1 -4 6996 6941 1 1398 200 59 0 29 chr6 106609683 106609718 -42907319 + (CATCC)n Simple_repeat Simple_repeat 3 36 0 1 1398 3289 113 71 0 chr6 106609718 106610137 -42906900 - Lx2B LINE L1 -60 6940 6488 1 1398 984 159 199 0 chr6 106610193 106610369 -42906668 + B3 SINE B2 2 212 -4 1 1398 243 154 60 30 chr6 106610595 106610662 -42906375 - MIR SINE MIR -57 205 137 1 1398 342 330 87 51 chr6 106610849 106611044 -42905993 - MIRc SINE MIR -32 236 35 1 1398 910 316 35 16 chr6 106611239 106611493 -42905544 + B4 SINE B4 32 290 -2 1 1398 275 307 115 11 chr6 106611593 106611716 -42905321 + MIR SINE MIR 98 226 -36 1 1398 325 0 44 0 chr6 106613472 106613517 -42903520 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 1398 358 232 0 14 chr6 106613811 106613881 -42903156 - PB1D10 SINE Alu -40 77 9 2 1398 560 273 31 31 chr6 106613923 106614082 -42902955 - B3 SINE B2 -56 160 2 2 1398 216 0 0 0 chr6 106615264 106615288 -42901749 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1398 460 264 49 8 chr6 106617129 106617251 -42899786 - ETnERV2-int LTR ERVK -210 7196 7070 2 1398 981 0 0 0 chr6 106617934 106618043 -42898994 + (AATAG)n Simple_repeat Simple_repeat 1 109 0 2 1398 5400 93 63 14 chr6 106618043 106619511 -42897526 + L1VL2 LINE L1 274 1826 -1789 2 1398 21 36 0 0 chr6 106619530 106619558 -42897479 + AT_rich Low_complexity Low_complexity 1 28 0 2 1398 290 303 0 0 chr6 106619654 106619730 -42897307 - PB1D10 SINE Alu -2 115 40 2 1398 31 0 0 0 chr6 106620616 106620647 -42896390 + AT_rich Low_complexity Low_complexity 1 31 0 2 1398 243 346 39 29 chr6 106621282 106621386 -42895651 - ORR1E LTR MaLR -254 105 1 2 1398 571 335 102 30 chr6 106622216 106622551 -42894486 + ORR1E LTR MaLR 1 359 0 2 1398 986 157 141 5 chr6 106622985 106623183 -42893854 + URR1B DNA MER1_type 1 225 0 2 1398 238 247 73 2 chr6 106623852 106623972 -42893065 - MIRb SINE MIR -36 226 101 2 1398 241 290 87 75 chr6 106623991 106624256 -42892781 + L2c LINE L2 3096 3363 -24 2 1398 283 132 14 14 chr6 106625364 106625433 -42891604 + T-rich Low_complexity Low_complexity 3 71 0 2 1398 315 0 0 0 chr6 106626114 106626149 -42890888 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1398 435 193 0 0 chr6 106626153 106626287 -42890750 + CT-rich Low_complexity Low_complexity 8 141 0 2 1398 441 0 0 0 chr6 106626287 106626336 -42890701 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1398 272 287 48 29 chr6 106626347 106626451 -42890586 + PB1D10 SINE Alu 12 117 0 2 1398 270 0 129 0 chr6 106627011 106627081 -42889956 + (CATA)n Simple_repeat Simple_repeat 3 81 0 2 1398 247 291 112 36 chr6 106627667 106627863 -42889174 + MER113A DNA MER1_type 86 296 -18 2 1398 690 282 0 42 chr6 106628719 106628908 -42888129 + B3A SINE B2 2 182 -16 2 1398 22 56 0 0 chr6 106628909 106628945 -42888092 + AT_rich Low_complexity Low_complexity 1 36 0 2 1398 753 171 0 0 chr6 106630364 106630539 -42886498 + GA-rich Low_complexity Low_complexity 2 176 0 2 1398 2898 83 31 0 chr6 106630548 106630932 -42886105 - MTA_Mm LTR MaLR 0 396 1 2 1398 256 340 64 0 chr6 106630960 106631054 -42885983 - ORR1E LTR MaLR -238 121 22 2 1398 207 276 0 17 chr6 106631241 106631300 -42885737 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1398 315 85 0 0 chr6 106631435 106631482 -42885555 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1398 380 362 80 0 chr6 106631493 106631631 -42885406 - B3A SINE B2 -47 151 3 2 1398 199 419 54 18 chr6 106632543 106632764 -42884273 - L3 LINE CR1 -63 4426 4198 2 1398 6108 166 68 5 chr6 106634090 106635430 -42881607 - Lx3A LINE L1 -1 6980 5548 2 1398 12068 139 49 45 chr6 106635424 106638481 -42878556 - Lx3A LINE L1 -2113 3773 695 2 1398 7927 47 1 1 chr6 106638555 106640153 -42876884 - L1Md_F2 LINE L1 -13 6569 4970 2 1398 253 282 106 0 chr6 106640685 106640770 -42876267 - MLT1A1 LTR MaLR 0 408 315 2 1398 522 234 26 18 chr6 106641008 106641121 -42875916 - B1F SINE Alu 0 149 36 2 1398 403 338 67 8 chr6 106641445 106641579 -42875458 - RSINE1 SINE B4 -12 153 12 2 1398 368 355 16 0 chr6 106641704 106641828 -42875209 + MIR SINE MIR 27 152 -110 2 1398 412 348 11 42 chr6 106642568 106642757 -42874280 + MER5A DNA MER1_type 3 185 -4 2 1398 300 237 34 0 chr6 106643211 106643296 -42873741 + MIRb SINE MIR 110 200 -62 2 1398 306 342 56 25 chr6 106643804 106643961 -42873076 - MIRb SINE MIR -74 194 32 2 1398 702 128 25 17 chr6 106644813 106644932 -42872105 - B1_Mur1 SINE Alu -2 147 28 2 1398 27 0 0 0 chr6 106645217 106645244 -42871793 + AT_rich Low_complexity Low_complexity 1 27 0 2 1398 405 228 109 42 chr6 106645437 106645556 -42871481 - B1F2 SINE Alu 0 149 23 2 1398 184 375 10 0 chr6 106645664 106645760 -42871277 - L2 LINE L2 -1021 2398 2302 2 1398 235 188 25 0 chr6 106646091 106646153 -42870884 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1398 360 0 0 0 chr6 106646153 106646193 -42870844 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1398 235 188 25 0 chr6 106646193 106646210 -42870827 + (TA)n Simple_repeat Simple_repeat 1 17 0 2 1398 24 32 0 0 chr6 106646245 106646276 -42870761 + AT_rich Low_complexity Low_complexity 1 31 0 2 1398 298 378 43 12 chr6 106646643 106646838 -42870199 + MIRb SINE MIR 10 214 -54 2 1398 616 269 168 48 chr6 106647049 106647299 -42869738 + B4 SINE B4 2 281 -11 2 1398 24 85 0 0 chr6 106647881 106647940 -42869097 + AT_rich Low_complexity Low_complexity 1 59 0 2 1398 447 274 69 132 chr6 106649670 106650132 -42866905 + L2c LINE L2 2951 3383 -4 2 1398 604 198 8 25 chr6 106652520 106652639 -42864398 - B1_Mur2 SINE Alu -32 117 1 2 1398 254 261 71 126 chr6 106652639 106652680 -42864357 - MT2B2 LTR ERVL -431 153 120 2 1398 5028 29 0 0 chr6 106652760 106653346 -42863691 + L1Md_A LINE L1 5997 6582 0 2 1398 481 284 209 42 chr6 106653421 106653704 -42863333 - ORR1E LTR MaLR -15 344 15 2 1398 239 225 57 32 chr6 106654324 106654448 -42862589 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 2 1398 387 0 0 0 chr6 106654449 106654492 -42862545 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 1398 321 252 9 88 chr6 106654758 106654871 -42862166 - MER53 DNA hAT -1 192 89 2 1398 210 154 0 25 chr6 106655956 106655996 -42861041 + CT-rich Low_complexity Low_complexity 1 39 0 2 1398 2843 58 58 3 chr6 106656140 106656519 -42860518 - MTB LTR MaLR 0 400 1 2 1398 198 0 0 0 chr6 106656557 106656579 -42860458 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 1398 230 274 24 96 chr6 106657897 106658022 -42859015 + Charlie6 DNA MER1_type 310 425 -3075 2 1398 343 165 44 66 chr6 106658284 106658375 -42858662 - B3 SINE B2 0 216 128 2 1398 2691 154 61 56 chr6 106658404 106658641 -42858396 + RMER4B LTR ERVK 10 243 -342 2 1398 198 0 0 0 chr6 106658641 106658663 -42858374 + (TGGG)n Simple_repeat Simple_repeat 2 23 0 2 1398 2691 154 61 56 chr6 106658663 106658996 -42858041 + RMER4B LTR ERVK 244 582 -3 2 1398 706 246 0 47 chr6 106658996 106659131 -42857906 - B3 SINE B2 -87 129 2 2 1398 268 264 88 0 chr6 106659711 106659802 -42857235 + MER5A DNA MER1_type 7 105 -84 2 1398 1092 72 0 7 chr6 106660399 106660553 -42856484 - L1_Mus2 LINE L1 -218 6348 6196 2 1398 1883 66 0 8 chr6 106660553 106660811 -42856226 + L1_Mus2 LINE L1 5931 6186 -380 2 1398 576 281 75 50 chr6 106661254 106661464 -42855573 - B4A SINE B4 0 292 87 2 1398 225 94 0 0 chr6 106661464 106661496 -42855541 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1398 576 281 75 50 chr6 106661496 106661566 -42855471 - B4A SINE B4 -206 86 6 2 1398 207 0 0 0 chr6 106662114 106662137 -42854900 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1398 995 114 0 0 chr6 106662137 106662277 -42854760 - B1_Mus1 SINE Alu -8 140 1 2 1398 324 143 0 0 chr6 106662513 106662569 -42854468 + (T)n Simple_repeat Simple_repeat 1 56 0 2 1398 21 36 0 0 chr6 106662753 106662781 -42854256 + AT_rich Low_complexity Low_complexity 1 28 0 2 1398 596 296 36 31 chr6 106663291 106663486 -42853551 + MER2 DNA MER2_type 118 313 -32 2 1398 301 240 52 26 chr6 106664542 106664619 -42852418 + MER58A DNA MER1_type 28 106 -118 2 1398 232 232 43 147 chr6 106664851 106664967 -42852070 + MT2B2 LTR ERVL 155 258 -326 2 1398 574 256 32 0 chr6 106664886 106665011 -42852026 + B1_Mur2 SINE Alu 21 149 0 2 1398 320 204 0 31 chr6 106665410 106665506 -42851531 + (CATA)n Simple_repeat Simple_repeat 2 94 0 2 1398 354 171 0 0 chr6 106667670 106667740 -42849297 + (TCCA)n Simple_repeat Simple_repeat 4 73 0 2 1398 1037 144 95 11 chr6 106668358 106668547 -42848490 + Lx4B LINE L1 6850 7054 -4 2 1398 757 270 91 5 chr6 106668711 106668908 -42848129 - ID_B1 SINE B4 -8 216 3 2 1398 1433 88 22 5 chr6 106668933 106669117 -42847920 + B2_Mm2 SINE B2 1 187 -8 2 1398 297 248 41 81 chr6 106669573 106669696 -42847341 + PB1D7 SINE Alu 3 120 0 2 1398 203 0 119 0 chr6 106670837 106670879 -42846158 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1398 500 298 58 17 chr6 106670998 106671172 -42845865 + B3A SINE B2 2 182 -16 2 1398 503 294 0 0 chr6 106671246 106671365 -42845672 + B1F2 SINE Alu 6 124 -25 2 1398 560 292 12 99 chr6 106672111 106672282 -42844755 - RSINE1 SINE B4 -7 158 3 2 1398 489 34 0 0 chr6 106672295 106672354 -42844683 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1398 300 273 60 120 chr6 106674268 106674418 -42842619 + B4 SINE B4 32 172 -120 2 1398 214 351 13 25 chr6 106674442 106674521 -42842516 + RSINE1 SINE B4 87 164 -1 2 1398 863 248 90 52 chr6 106674534 106674952 -42842085 + RMER10A LTR ERVL 7 392 -50 2 1398 727 99 22 71 chr6 106675286 106675470 -42841567 + CT-rich Low_complexity Low_complexity 6 180 0 2 1398 21 36 0 0 chr6 106675623 106675651 -42841386 + AT_rich Low_complexity Low_complexity 1 28 0 2 1398 1812 232 44 45 chr6 106676416 106676944 -42840093 - RLTR11A2 LTR ERVK 0 527 1 2 1398 417 70 0 0 chr6 106677000 106677057 -42839980 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1398 1103 178 118 5 chr6 106677372 106677575 -42839462 - URR1A DNA MER1_type 0 226 1 2 1398 960 9 0 0 chr6 106677961 106678070 -42838967 + (GAA)n Simple_repeat Simple_repeat 3 111 0 2 1398 205 368 0 33 chr6 106678384 106678474 -42838563 + MIR3 SINE MIR 70 156 -52 2 1398 195 284 88 33 chr6 106678683 106678774 -42838263 + L3 LINE CR1 3536 3631 -858 2 1398 281 239 122 8 chr6 106679081 106679187 -42837850 - MIRc SINE MIR -130 146 31 2 1398 758 289 116 5 chr6 106680830 106681209 -42835828 + L1MD2 LINE L1 5939 6359 0 3 1398 696 316 71 28 chr6 106681211 106681465 -42835572 + B4A SINE B4 1 265 -27 3 1398 195 69 0 0 chr6 106682386 106682415 -42834622 + (CCCCCA)n Simple_repeat Simple_repeat 6 34 0 3 1398 422 248 69 8 chr6 106682714 106682844 -42834193 + Charlie10 DNA MER1_type 11 148 -2674 3 1398 217 148 49 12 chr6 106682903 106682985 -42834052 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 1398 283 282 35 0 chr6 106682985 106683070 -42833967 + Charlie10 DNA MER1_type 2712 2799 -23 3 1398 276 53 0 0 chr6 106683338 106683376 -42833661 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1398 4753 88 6 4 chr6 106683425 106684157 -42832880 - L1_Mus1 LINE L1 -610 5957 5224 3 1398 724 280 0 0 chr6 106684190 106684347 -42832690 - RSINE1 SINE B4 -6 159 3 3 1398 911 283 44 88 chr6 106684582 106684806 -42832231 - L1MB3 LINE L1 -176 6007 5786 3 1398 572 40 13 0 chr6 106684806 106684881 -42832156 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 1398 911 283 44 88 chr6 106684881 106684924 -42832113 - L1MB3 LINE L1 -398 5785 5768 3 1398 462 270 0 73 chr6 106684924 106685048 -42831989 - PB1D10 SINE Alu -2 115 1 3 1398 911 283 44 88 chr6 106685048 106685256 -42831781 - L1MB3 LINE L1 -416 5767 5553 3 1398 837 163 222 5 chr6 106685451 106685636 -42831401 + URR1B DNA MER1_type 1 225 0 3 1398 529 320 23 81 chr6 106686349 106686451 -42830586 + B4A SINE B4 25 120 -172 3 1398 4137 153 38 51 chr6 106686451 106687217 -42829820 + RMER6A LTR ERVK 1 756 0 3 1398 529 320 23 81 chr6 106687217 106687335 -42829702 + B4A SINE B4 121 231 -61 3 1398 303 161 0 0 chr6 106687443 106687499 -42829538 + G-rich Low_complexity Low_complexity 1 56 0 3 1398 362 322 84 84 chr6 106687776 106687942 -42829095 + MER20 DNA MER1_type 1 166 -53 3 1398 538 325 114 0 chr6 106689433 106689731 -42827306 - MER2 DNA MER2_type 0 345 14 3 1398 1181 66 0 0 chr6 106689910 106690047 -42826990 - B1_Mm SINE Alu -10 137 1 3 1398 195 69 0 0 chr6 106690380 106690409 -42826628 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1398 227 360 50 85 chr6 106690409 106690667 -42826370 + ORR1E LTR MaLR 43 291 -68 3 1398 610 170 17 26 chr6 106691457 106691572 -42825465 - B1_Mur4 SINE Alu 0 150 37 3 1398 677 301 42 56 chr6 106691964 106692179 -42824858 + B4A SINE B4 78 289 -3 3 1398 441 0 0 0 chr6 106692231 106692280 -42824757 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1398 582 15 0 0 chr6 106692280 106692346 -42824691 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1398 249 196 59 0 chr6 106692355 106692406 -42824631 + polypurine Low_complexity Low_complexity 4 57 0 3 1399 21 36 0 0 chr6 106692924 106692952 -42824085 + AT_rich Low_complexity Low_complexity 1 28 0 3 1399 229 216 0 73 chr6 106693305 106693360 -42823677 + MER112 DNA MER1_type 202 252 -9 3 1399 279 0 0 0 chr6 106695312 106695343 -42821694 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 3 1399 756 39 0 64 chr6 106695356 106695465 -42821572 + L1_Mus1 LINE L1 6456 6557 -10 3 1399 189 0 0 0 chr6 106695465 106695486 -42821551 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3 1399 293 228 37 37 chr6 106695512 106695594 -42821443 + ID4 SINE ID 1 82 -1 3 1399 609 88 29 0 chr6 106698311 106698413 -42818624 + (TC)n Simple_repeat Simple_repeat 1 105 0 3 1399 573 15 0 0 chr6 106699453 106699519 -42817518 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1399 702 128 9 0 chr6 106700021 106700130 -42816907 - URR1A DNA MER1_type -62 164 55 3 1399 578 259 0 0 chr6 106701426 106701542 -42815495 - ID_B1 SINE B4 -16 208 93 3 1399 22183 96 3 3 chr6 106702356 106706187 -42810850 + L1_Mus1 LINE L1 2737 6567 0 3 1399 201 222 22 0 chr6 106706223 106706268 -42810769 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1399 513 273 127 45 chr6 106706280 106706610 -42810427 + L1M4 LINE L1 5352 5708 -476 3 1399 942 152 0 0 chr6 106706645 106706822 -42810215 + CT-rich Low_complexity Low_complexity 4 180 0 3 1399 198 128 0 0 chr6 106706855 106706894 -42810143 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 1399 1784 280 54 12 chr6 106706895 106707487 -42809550 + Lx8 LINE L1 6851 7467 -6 3 1399 437 245 43 1 chr6 106707488 106707604 -42809433 + L1MB8 LINE L1 5671 5785 -371 3 1399 451 362 55 43 chr6 106707612 106707866 -42809171 + B4 SINE B4 13 269 -23 3 1399 3614 28 5 0 chr6 106707906 106708300 -42808737 + MTA_Mm LTR MaLR 1 396 0 3 1399 492 18 0 0 chr6 106708326 106708383 -42808654 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1399 690 279 81 78 chr6 106708395 106708803 -42808234 + L1MB8 LINE L1 5770 6178 0 3 1399 424 343 93 54 chr6 106709031 106709311 -42807726 + B4A SINE B4 2 292 0 3 1399 254 177 0 139 chr6 106709439 106709511 -42807526 - MIRb SINE MIR -95 173 112 3 1399 531 0 0 0 chr6 106710827 106710886 -42806151 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1399 736 296 5 56 chr6 106710914 106711129 -42805908 - B4 SINE B4 -78 214 11 3 1399 977 284 183 3 chr6 106711547 106711858 -42805179 + ORR1D2 LTR MaLR 1 367 -3 3 1399 1205 185 171 110 chr6 106712235 106712697 -42804340 + MT2A LTR ERVL 1 490 -43 3 1399 224 256 12 0 chr6 106712700 106712786 -42804251 + (TA)n Simple_repeat Simple_repeat 1 87 0 3 1399 225 172 138 0 chr6 106713504 106713562 -42803475 - L1MD3 LINE L1 -2033 5962 5897 3 1399 2039 155 76 80 chr6 106713599 106714049 -42802988 - RMER6B LTR ERVK -13 448 1 3 1399 551 322 112 42 chr6 106714081 106714435 -42802602 - L1ME2 LINE L1 -323 5841 5460 3 1399 8631 28 0 5 chr6 106714435 106715369 -42801668 - RLTR13B3 LTR ERVK 0 929 1 3 1399 551 322 112 42 chr6 106715369 106715442 -42801595 - L1ME2 LINE L1 -705 5459 5384 3 1399 270 0 0 0 chr6 106716097 106716127 -42800910 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1399 1715 181 107 5 chr6 106716199 106716581 -42800456 - RMER10A LTR ERVL -18 424 4 3 1399 711 301 18 11 chr6 106716585 106716870 -42800167 - L1_Mur3 LINE L1 -1121 4759 4473 3 1399 2032 149 53 18 chr6 106716915 106717311 -42799726 + RMER17C LTR ERVK 1 410 0 3 1399 7008 68 0 2 chr6 106717429 106718276 -42798761 - L1Md_T LINE L1 0 6582 5738 3 1399 200 59 0 29 chr6 106718968 106719003 -42798034 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1399 464 283 67 0 chr6 106720597 106720717 -42796320 - RSINE1 SINE B4 -35 130 3 3 1399 379 238 191 0 chr6 106721285 106721411 -42795626 - Lx8 LINE L1 -89 7384 7235 3 1399 1236 173 128 17 chr6 106722409 106722698 -42794339 - RMER5 LTR ERV1 0 534 214 3 1399 536 267 0 0 chr6 106724209 106724325 -42792712 + RSINE1 SINE B4 2 117 -48 3 1399 294 95 0 0 chr6 106724757 106724799 -42792238 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 3 1399 1689 187 94 11 chr6 106725226 106725599 -42791438 - RMER1B Other Other -9 1057 654 3 1399 444 277 24 48 chr6 106727017 106727034 -42790003 + ID_B1 SINE B4 78 199 -25 3 1399 505 196 56 9 chr6 106727034 106727142 -42789895 + B1F SINE Alu 9 121 -28 3 1399 182 349 0 43 chr6 106735083 106735152 -42781885 + L3 LINE CR1 4133 4198 -291 3 1399 853 71 167 0 chr6 106736998 106737124 -42779913 - B1_Mus1 SINE Alu 0 148 2 3 1399 278 234 0 30 chr6 106740301 106740367 -42776670 - ID4 SINE ID -16 67 4 3 1399 192 163 0 0 chr6 106741658 106741701 -42775336 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1399 430 136 45 0 chr6 106742152 106742240 -42774797 + (TATG)n Simple_repeat Simple_repeat 2 93 0 3 1399 219 278 160 34 chr6 106742389 106742508 -42774529 + MIRc SINE MIR 11 144 -124 3 1399 201 74 0 0 chr6 106746029 106746056 -42770981 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1399 210 71 0 0 chr6 106746173 106746201 -42770836 + (TTTCC)n Simple_repeat Simple_repeat 3 30 0 3 1399 436 292 84 4 chr6 106746208 106746469 -42770568 - L1MC3 LINE L1 0 7785 7504 3 1399 363 326 53 31 chr6 106746574 106746802 -42770235 - L1MC3 LINE L1 -452 7333 7101 3 1399 205 156 0 0 chr6 106747149 106747181 -42769856 + T-rich Low_complexity Low_complexity 4 35 0 3 1399 1206 35 0 0 chr6 106747185 106747326 -42769711 - B1_Mus1 SINE Alu -6 142 2 3 1399 233 317 33 0 chr6 106747529 106747589 -42769448 + MER20 DNA MER1_type 19 80 -139 3 1399 351 253 0 99 chr6 106750936 106751037 -42766000 - RMER10B LTR ERVL -38 360 270 3 1399 195 271 27 41 chr6 106751323 106751396 -42765641 + MIR SINE MIR 61 132 -76 3 1399 823 272 10 66 chr6 106751807 106752110 -42764927 - B4 SINE B4 -5 287 2 3 1399 27 29 0 0 chr6 106752268 106752302 -42764735 + AT_rich Low_complexity Low_complexity 1 34 0 3 1399 444 37 0 0 chr6 106752650 106752704 -42764333 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1399 438 96 0 0 chr6 106753834 106753907 -42763130 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1399 310 204 0 0 chr6 106754013 106754062 -42762975 - HAL1-3A_ME LINE L1 -835 2023 1975 3 1399 276 143 43 0 chr6 106754064 106754134 -42762903 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 1399 25 31 0 0 chr6 106754588 106754620 -42762417 + AT_rich Low_complexity Low_complexity 1 32 0 3 1399 569 282 89 98 chr6 106755638 106755945 -42761092 - ORR1E LTR MaLR -10 349 43 3 1399 633 27 0 0 chr6 106755945 106756020 -42761017 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1399 626 312 62 52 chr6 106756289 106756614 -42760423 + Charlie20a DNA Charlie 114 441 -366 3 1399 1901 182 39 11 chr6 106756955 106757337 -42759700 + ORR1B1 LTR MaLR 1 393 -1 3 1399 260 257 0 26 chr6 106757651 106757727 -42759310 + CT-rich Low_complexity Low_complexity 4 77 0 3 1399 422 333 33 1 chr6 106757729 106757868 -42759169 - B1_Mur4 SINE Alu -1 149 6 3 1399 588 280 167 20 chr6 106758464 106758668 -42758369 + MLT1D LTR MaLR 9 242 -263 3 1399 198 0 0 0 chr6 106759205 106759227 -42757810 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1399 228 250 0 0 chr6 106759884 106759928 -42757109 - tRNA-Ala-GCY_ tRNA tRNA -4 71 28 3 1399 2390 190 52 78 chr6 106759929 106760470 -42756567 - RLTR24 LTR ERV1 0 529 3 4 1399 1948 103 7 3 chr6 106761080 106761373 -42755664 + L1_Mus4 LINE L1 6335 6628 -8 4 1399 1602 256 14 68 chr6 106761869 106762405 -42754632 + Lx6 LINE L1 6556 7434 -26 4 1399 200 309 131 0 chr6 106762866 106762950 -42754087 + L2a LINE L2 3327 3421 -5 4 1399 259 274 91 30 chr6 106763648 106763780 -42753257 + Tigger14a DNA MER2_type 98 237 -87 4 1399 194 352 168 12 chr6 106764488 106764649 -42752388 + MIR3 SINE MIR 5 190 -18 4 1399 802 251 20 66 chr6 106764755 106764951 -42752086 + B3 SINE B2 1 187 -29 4 1399 263 180 56 11 chr6 106764952 106765042 -42751995 + (TA)n Simple_repeat Simple_repeat 1 94 0 4 1399 1329 236 21 11 chr6 106765129 106765416 -42751621 - ORR1C2 LTR MaLR -38 346 57 4 1399 592 195 23 8 chr6 106765409 106765538 -42751499 + ORR1D1-int LTR MaLR 1097 1227 -143 4 1399 7353 65 1 3 chr6 106765557 106766499 -42750538 + L1Md_F2 LINE L1 5643 6582 0 4 1399 640 197 290 14 chr6 106766561 106766782 -42750255 + ORR1D1 LTR MaLR 84 365 -9 4 1399 6733 108 165 23 chr6 106766868 106768773 -42748264 + Lx LINE L1 4396 6647 -7 4 1399 835 304 23 50 chr6 106768971 106769054 -42747983 - B4 SINE B4 0 292 212 4 1399 243 0 0 0 chr6 106769054 106769081 -42747956 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 1399 835 304 23 50 chr6 106769081 106769257 -42747780 - B4 SINE B4 -81 211 40 4 1399 277 397 0 40 chr6 106769305 106769431 -42747606 + MamRep4096 DNA hAT? 306 426 0 4 1399 412 329 158 38 chr6 106769496 106769761 -42747276 - MLT1D LTR MaLR -2 503 207 4 1399 285 313 60 0 chr6 106769816 106769899 -42747138 - MLT1D LTR MaLR -394 111 24 4 1399 825 136 7 7 chr6 106771141 106771296 -42745741 - Lx2 LINE L1 -57 6940 6786 4 1399 525 100 0 0 chr6 106771347 106771437 -42745600 + (TC)n Simple_repeat Simple_repeat 1 90 0 4 1399 258 32 0 0 chr6 106771437 106771468 -42745569 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1399 286 313 25 50 chr6 106772032 106772153 -42744884 - MIRm SINE MIR -6 270 153 4 1399 288 0 0 0 chr6 106772549 106772581 -42744456 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1399 201 105 53 0 chr6 106772604 106772642 -42744395 + CT-rich Low_complexity Low_complexity 1 40 0 4 1399 705 56 0 0 chr6 106773353 106773443 -42743594 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 4 1399 879 192 0 0 chr6 106773470 106773647 -42743390 + CT-rich Low_complexity Low_complexity 1 177 0 4 1399 698 161 47 40 chr6 106774102 106774251 -42742786 - B1_Mur4 SINE Alu 0 150 1 4 1399 363 333 83 44 chr6 106774866 106775070 -42741967 + MLT1D LTR MaLR 36 247 -258 4 1399 266 236 159 14 chr6 106775418 106775542 -42741495 - MIR SINE MIR -133 143 6 4 1399 395 56 27 27 chr6 106776151 106776224 -42740813 + (TA)n Simple_repeat Simple_repeat 1 73 0 4 1399 32 0 0 0 chr6 106776225 106776257 -42740780 + AT_rich Low_complexity Low_complexity 1 32 0 4 1399 582 329 21 0 chr6 106776734 106776874 -42740163 + RSINE1 SINE B4 21 163 -2 4 1399 180 0 0 0 chr6 106776888 106776908 -42740129 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1399 369 0 0 0 chr6 106776908 106776948 -42740089 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1399 294 29 0 0 chr6 106777136 106777171 -42739866 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 4 1399 466 274 29 0 chr6 106777421 106777523 -42739514 + ID_B1 SINE B4 100 204 -20 4 1399 216 0 0 0 chr6 106777523 106777547 -42739490 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 4 1399 362 264 144 24 chr6 106777733 106777900 -42739137 + Lx3_Mus LINE L1 245 431 -6553 4 1399 31380 83 33 3 chr6 106777957 106783038 -42733999 + Lx3_Mus LINE L1 676 5906 -1103 4 1399 207 0 0 0 chr6 106783038 106783061 -42733976 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 4 1399 3116 91 86 14 chr6 106783061 106783242 -42733795 + Lx3_Mus LINE L1 5907 6124 -885 4 1399 5476 83 21 1 chr6 106783250 106783994 -42733043 + Lx3_Mus LINE L1 6251 7009 0 4 1399 522 103 0 0 chr6 106784344 106784431 -42732606 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1399 241 220 102 0 chr6 106784432 106784491 -42732546 - RSINE1 SINE B4 -42 123 59 4 1399 2083 120 9 16 chr6 106784591 106784912 -42732125 - ORR1A2 LTR MaLR -8 319 1 4 1399 597 298 97 4 chr6 106786156 106786382 -42730655 - MER47B DNA MER2_type -164 254 8 4 1399 633 278 70 103 chr6 106786807 106786871 -42730166 - B4 SINE B4 -1 291 231 4 1399 1307 84 20 31 chr6 106786871 106787067 -42729970 - B2_Mm2 SINE B2 -1 194 1 4 1399 208 0 62 0 chr6 106787077 106787109 -42729928 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4 1399 633 278 70 103 chr6 106787109 106787253 -42729784 - B4 SINE B4 -75 217 86 4 1399 270 0 0 0 chr6 106787253 106787283 -42729754 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 1399 633 278 70 103 chr6 106787283 106787363 -42729674 - B4 SINE B4 -207 85 3 4 1399 252 355 0 18 chr6 106789621 106789733 -42727304 + PB1D10 SINE Alu 1 110 -7 4 1399 378 0 0 0 chr6 106789949 106789991 -42727046 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1399 483 228 20 75 chr6 106790721 106790868 -42726169 - B3A SINE B2 0 198 60 4 1399 357 56 0 66 chr6 106791756 106791832 -42725205 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 4 1399 216 0 0 0 chr6 106791836 106791860 -42725177 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1399 287 0 53 0 chr6 106791992 106792030 -42725007 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 4 1399 756 298 126 50 chr6 106792138 106792176 -42724861 - MTD LTR MaLR -32 389 359 4 1399 2146 129 0 10 chr6 106792176 106792490 -42724547 + RLTR10E LTR ERVK 1 311 0 4 1399 988 258 126 25 chr6 106792490 106792808 -42724229 - MTD LTR MaLR -64 355 6 4 1399 549 270 24 0 chr6 106793843 106793969 -42723068 - B1F SINE Alu -2 147 19 4 1399 417 20 0 0 chr6 106793972 106794022 -42723015 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1399 621 297 122 44 chr6 106794031 106794227 -42722810 - B4A SINE B4 0 292 76 4 1399 1875 176 7 116 chr6 106794227 106794469 -42722568 - ORR1C1 LTR MaLR 0 378 143 4 1399 215 31 0 30 chr6 106794469 106794502 -42722535 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1399 1875 176 7 116 chr6 106794502 106794683 -42722354 - ORR1C1 LTR MaLR -236 142 1 4 1399 621 297 122 44 chr6 106794683 106794757 -42722280 - B4A SINE B4 -217 75 1 4 1399 261 289 0 0 chr6 106794768 106794844 -42722193 - L1MB2 LINE L1 -53 6118 6043 4 1399 2437 133 108 166 chr6 106796294 106796602 -42720435 - RLTR31A_Mm LTR ERVK -2 582 304 4 1399 1226 41 7 0 chr6 106796602 106796748 -42720289 - B1_Mm SINE Alu 0 147 1 4 1399 2437 133 108 166 chr6 106796748 106797053 -42719984 - RLTR31A_Mm LTR ERVK -281 303 5 4 1399 1755 158 24 144 chr6 106797210 106797633 -42719404 - ORR1D1 LTR MaLR -2 372 1 4 1399 24 0 0 0 chr6 106798010 106798034 -42719003 + AT_rich Low_complexity Low_complexity 1 24 0 4 1399 215 342 0 0 chr6 106798354 106798430 -42718607 + (TATG)n Simple_repeat Simple_repeat 4 79 0 4 1399 248 217 16 16 chr6 106798570 106798631 -42718406 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 4 1399 671 335 108 51 chr6 106798799 106799189 -42717848 + MLT2B1 LTR ERVL 2 413 -1 4 1399 22 35 0 0 chr6 106799401 106799430 -42717607 + AT_rich Low_complexity Low_complexity 1 29 0 4 1399 212 184 20 0 chr6 106799551 106799600 -42717437 + CT-rich Low_complexity Low_complexity 4 53 0 4 1399 606 82 0 0 chr6 106799675 106799760 -42717277 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 1399 424 351 153 18 chr6 106799761 106799990 -42717047 - B4A SINE B4 -23 269 10 4 1399 273 190 76 0 chr6 106800015 106800094 -42716943 - Charlie8 DNA MER1_type -2283 145 61 4 1399 208 316 60 20 chr6 106800685 106800785 -42716252 + MIR3 SINE MIR 79 182 -26 4 1399 310 351 14 90 chr6 106802016 106802160 -42714877 + B4A SINE B4 42 174 -118 4 1399 288 0 0 0 chr6 106802204 106802236 -42714801 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1399 508 294 65 22 chr6 106802372 106802556 -42714481 - B3A SINE B2 -5 193 2 4 1399 368 321 60 22 chr6 106802572 106802706 -42714331 - B1F SINE Alu -9 140 2 4 1399 1196 104 35 0 chr6 106803604 106803777 -42713260 + B2_Mm1t SINE B2 2 180 -13 4 1399 399 89 348 11 chr6 106803823 106803928 -42713109 + B2_Mm2 SINE B2 47 191 -4 4 1399 380 300 107 48 chr6 106803919 106804078 -42712959 + MER2 DNA MER2_type 74 245 -100 4 1399 348 64 0 0 chr6 106804078 106804125 -42712912 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1399 380 300 107 48 chr6 106804125 106804217 -42712820 + MER2 DNA MER2_type 246 340 -5 4 1399 825 87 0 0 chr6 106804606 106804721 -42712316 + (TCCC)n Simple_repeat Simple_repeat 4 118 0 4 1399 488 211 14 81 chr6 106805004 106805184 -42711853 - RMER2 LTR ERV1 -229 338 1 4 1399 3891 121 66 8 chr6 106805218 106805842 -42711195 - Lx2A1 LINE L1 -3 7005 6346 4 1399 252 303 84 84 chr6 106805849 106806062 -42710975 + MLT1D LTR MaLR 24 236 -269 4 1399 942 289 40 32 chr6 106806099 106806446 -42710591 - MLT2D LTR ERVL -60 354 5 4 1399 988 83 0 0 chr6 106806459 106806591 -42710446 + B1_Mus1 SINE Alu 11 142 -6 4 1399 633 246 71 27 chr6 106806680 106806864 -42710173 - MIRb SINE MIR -38 230 39 4 1399 249 33 0 0 chr6 106807754 106807784 -42709253 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 4 1399 769 278 0 48 chr6 106808313 106808502 -42708535 + B3A SINE B2 15 194 -4 4 1399 184 211 0 123 chr6 106808647 106808712 -42708325 + MIRc SINE MIR 66 122 -146 4 1399 430 252 236 7 chr6 106808957 106809105 -42707932 - MLT1D LTR MaLR -75 430 249 4 1399 668 182 98 71 chr6 106809139 106809322 -42707715 - ORR1C1 LTR MaLR -15 379 124 4 1399 1346 179 81 0 chr6 106809704 106809950 -42707087 - ORR1C1 LTR MaLR -110 268 3 4 1399 2710 60 0 0 chr6 106810851 106811202 -42705835 - L1Md_F2 LINE L1 -260 6322 5972 4 1399 1232 119 15 15 chr6 106811202 106811406 -42705631 + L1Md_F2 LINE L1 6377 6580 -2 4 1399 473 240 157 103 chr6 106811461 106811665 -42705372 + B3 SINE B2 1 215 -1 4 1399 21 82 0 0 chr6 106811687 106811736 -42705301 + AT_rich Low_complexity Low_complexity 1 49 0 4 1399 785 208 20 0 chr6 106811779 106811928 -42705109 - MTD LTR MaLR -267 152 1 4 1399 429 275 142 91 chr6 106813522 106813698 -42703339 + B3A SINE B2 11 195 -3 4 1399 754 216 7 0 chr6 106814345 106814484 -42702553 + B1_Mur2 SINE Alu 2 141 -8 4 1399 590 299 27 16 chr6 106814572 106814759 -42702278 - B3A SINE B2 -7 191 3 4 1399 367 302 12 0 chr6 106814842 106814928 -42702109 - PB1D10 SINE Alu -21 96 10 4 1399 323 354 10 10 chr6 106814843 106814940 -42702097 - ID_B1 SINE B4 -48 176 80 5 1399 21 36 0 0 chr6 106815003 106815031 -42702006 + AT_rich Low_complexity Low_complexity 1 28 0 5 1399 7029 75 15 2 chr6 106815202 106816734 -42700303 - L1_Mus2 LINE L1 0 6566 5016 5 1399 3928 98 8 8 chr6 106816731 106817331 -42699706 + L1_Mus2 LINE L1 4417 5016 -867 5 1399 1788 237 60 16 chr6 106817412 106817896 -42699141 - Lx2B LINE L1 -10 6990 6486 5 1399 7002 162 31 46 chr6 106817879 106819093 -42697944 - L1_Mur2 LINE L1 -7 5870 4655 5 1399 4663 58 2 7 chr6 106819093 106819688 -42697349 + L1Md_F2 LINE L1 5979 6570 -12 5 1399 7002 162 31 46 chr6 106819688 106819963 -42697074 - L1_Mur2 LINE L1 -1223 4654 4402 5 1399 1481 173 79 4 chr6 106819969 106820054 -42696983 - RLTR16 LTR ERVK 0 505 417 5 1399 438 20 0 0 chr6 106820054 106820105 -42696932 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1399 1481 173 79 4 chr6 106820105 106820297 -42696740 - RLTR16 LTR ERVK -89 416 209 5 1399 874 188 119 0 chr6 106820293 106820469 -42696568 - MTC LTR MaLR -222 199 3 5 1399 241 355 33 88 chr6 106820472 106820654 -42696383 - MLT1D LTR MaLR -305 200 29 5 1399 367 229 26 24 chr6 106820710 106820851 -42696186 - L1M5 LINE L1 -975 5469 5320 5 1399 683 302 21 5 chr6 106820869 106821059 -42695978 + B3A SINE B2 1 193 -5 5 1399 230 266 64 0 chr6 106821076 106821170 -42695867 - L1MC LINE L1 -843 5303 5204 5 1399 209 0 98 0 chr6 106821339 106821380 -42695657 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 5 1399 662 193 14 0 chr6 106821433 106821578 -42695459 + CT-rich Low_complexity Low_complexity 3 149 0 5 1399 250 202 25 0 chr6 106822125 106822204 -42694833 + A-rich Low_complexity Low_complexity 4 84 0 5 1399 366 42 0 0 chr6 106822532 106822580 -42694457 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1399 623 281 34 26 chr6 106822586 106822820 -42694217 - L1MA6 LINE L1 -385 5915 5680 5 1399 6038 186 31 11 chr6 106822821 106823361 -42693676 - L1_Mur2 LINE L1 -3286 2591 2054 5 1399 387 0 0 0 chr6 106823361 106823404 -42693633 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 174 6038 180 36 11 chr6 106823404 106824380 -42692657 - L1_Mur2 LINE L1 -3824 2053 977 5 1400 294 208 0 7 chr6 106824503 106824592 -42692445 - L1M2 LINE L1 -924 5219 5092 5 1400 189 0 0 0 chr6 106824731 106824752 -42692285 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 5 1400 2821 180 40 57 chr6 106826402 106826985 -42690052 + RMER15 LTR ERVL 3 575 0 5 1400 6516 82 37 12 chr6 106827776 106828342 -42688695 - L1Md_F2 LINE L1 0 6582 6000 5 1400 3452 25 2 0 chr6 106828342 106828737 -42688300 + MTA_Mm LTR MaLR 1 396 0 5 1400 22569 80 126 15 chr6 106828737 106832512 -42684525 - L1Md_F2 LINE L1 -583 5999 1806 5 1400 13141 25 0 0 chr6 106832518 106834809 -42682228 - L1Md_T LINE L1 0 6582 4293 5 1400 4728 135 40 11 chr6 106834809 106836355 -42680682 - L1Md_F2 LINE L1 -4063 1820 273 5 1400 3871 146 60 3 chr6 106836348 106837082 -42679955 + L1_Mm LINE L1 4857 5632 -251 5 1400 349 206 40 14 chr6 106837629 106837703 -42679334 + ID SINE ID 2 77 -147 5 1400 278 292 16 48 chr6 106837703 106837755 -42679282 + BC1_Mm scRNA scRNA 2 123 -29 5 1400 293 118 0 19 chr6 106838117 106838169 -42678868 + (TCTCCC)n Simple_repeat Simple_repeat 5 55 0 5 1400 654 105 26 0 chr6 106838163 106838277 -42678760 + (TTCC)n Simple_repeat Simple_repeat 3 119 0 5 1400 1149 199 7 32 chr6 106838282 106838563 -42678474 - Lx4B LINE L1 -32 7026 6753 5 1400 433 286 25 9 chr6 106838689 106838810 -42678227 - B1_Mur1 SINE Alu -1 148 19 5 1400 524 250 80 14 chr6 106838933 106839071 -42677966 + ID_B1 SINE B4 72 218 -6 5 1400 189 200 0 0 chr6 106839725 106839760 -42677277 + L4 LINE RTE 1785 1819 -210 5 1400 429 312 55 9 chr6 106839972 106840082 -42676955 - PB1D10 SINE Alu -1 116 2 5 1400 454 280 65 21 chr6 106840364 106840550 -42676487 + Lx9 LINE L1 7162 7355 -289 5 1400 2164 198 43 64 chr6 106840567 106840874 -42676163 - RMER1C Other Other -6 1336 1034 5 1400 991 128 54 38 chr6 106840874 106841060 -42675977 + Lx3B LINE L1 6785 6973 0 5 1400 213 39 0 0 chr6 106841068 106841094 -42675943 + (ATG)n Simple_repeat Simple_repeat 2 27 0 5 1400 2164 198 43 64 chr6 106841094 106841383 -42675654 - RMER1C Other Other -309 1033 744 5 1400 198 0 0 0 chr6 106841385 106841407 -42675630 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1400 419 205 71 26 chr6 106841415 106841570 -42675467 + Lx9 LINE L1 7477 7638 -6 5 1400 206 182 23 0 chr6 106841649 106841693 -42675344 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 5 1400 267 281 120 38 chr6 106841802 106841935 -42675102 + MIRm SINE MIR 39 182 -94 5 1400 208 302 38 0 chr6 106843098 106843151 -42673886 + L2c LINE L2 3110 3164 -223 5 1400 435 297 60 80 chr6 106843299 106843449 -42673588 + B4A SINE B4 5 151 -141 5 1400 495 0 0 0 chr6 106843496 106843551 -42673486 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1400 616 228 140 21 chr6 106843744 106843937 -42673100 + B3 SINE B2 1 216 0 5 1400 22 35 0 0 chr6 106844064 106844093 -42672944 + AT_rich Low_complexity Low_complexity 1 29 0 5 1400 244 354 128 32 chr6 106844918 106845121 -42671916 - MIRb SINE MIR -13 255 28 5 1400 456 351 50 47 chr6 106845670 106845990 -42671047 + L1MC4a LINE L1 6750 7070 -925 5 1400 616 324 61 6 chr6 106846095 106846275 -42670762 + B4 SINE B4 93 282 -10 5 1400 606 277 34 30 chr6 106846298 106846566 -42670471 + L1MC4a LINE L1 7075 7343 -539 5 1400 36504 40 0 2 chr6 106846837 106853040 -42663997 - L1Md_T LINE L1 0 6585 300 5 1400 326 229 12 0 chr6 106853043 106853126 -42663911 + Tigger7 DNA MER2_type 2311 2394 -97 5 1400 279 281 196 14 chr6 106853207 106853482 -42663555 + L1MC4a LINE L1 7546 7870 -12 5 1400 341 276 0 3 chr6 106853485 106853576 -42663461 - ID4 SINE ID -48 104 15 5 1400 364 305 7 127 chr6 106853677 106853827 -42663210 + B4 SINE B4 1 132 -160 5 1400 788 255 42 16 chr6 106853831 106854022 -42663015 + B4A SINE B4 97 292 0 5 1400 189 0 0 0 chr6 106855080 106855101 -42661936 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1400 450 0 0 0 chr6 106855101 106855150 -42661887 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1400 378 107 0 0 chr6 106855166 106855222 -42661815 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1400 4783 136 16 23 chr6 106855561 106856425 -42660612 - L1_Mus3 LINE L1 -765 5118 4261 5 1400 7355 101 3 8 chr6 106856425 106857959 -42659078 + L1_Mus3 LINE L1 5110 6632 -6 5 1400 515 298 92 55 chr6 106859138 106859397 -42657640 + RLTR26 LTR ERVK 1 265 -377 5 1400 21 0 0 0 chr6 106860243 106860264 -42656773 + AT_rich Low_complexity Low_complexity 1 21 0 5 1400 751 296 49 101 chr6 106861141 106861427 -42655610 + B4A SINE B4 4 274 -18 5 1400 1160 76 0 0 chr6 106862067 106862211 -42654826 + B1_Mm SINE Alu 1 144 -3 5 1400 1564 200 17 3 chr6 106862599 106862895 -42654142 + RLTR11A2 LTR ERVK 1 300 -227 5 1400 918 152 7 27 chr6 106862915 106863064 -42653973 + B1_Mus1 SINE Alu 3 148 0 5 1400 209 357 31 31 chr6 106863359 106863489 -42653548 + MIR SINE MIR 88 217 -45 5 1400 1338 237 71 20 chr6 106863615 106863748 -42653289 + ORR1D1 LTR MaLR 1 138 -236 5 1400 566 158 473 0 chr6 106863748 106863894 -42653143 + B3 SINE B2 1 215 -1 5 1400 1338 237 71 20 chr6 106863894 106864113 -42652924 + ORR1D1 LTR MaLR 139 371 -3 5 1400 316 339 15 66 chr6 106864130 106864326 -42652711 - L2 LINE L2 -952 2467 2282 5 1400 781 273 28 9 chr6 106864749 106864869 -42652168 + MTD LTR MaLR 10 133 -286 5 1400 613 24 24 0 chr6 106864869 106864952 -42652085 + (TG)n Simple_repeat Simple_repeat 1 85 0 5 1400 781 273 28 9 chr6 106864952 106865049 -42651988 + MTD LTR MaLR 134 230 -189 5 1400 817 255 89 56 chr6 106865139 106865463 -42651574 - Charlie22a DNA MER1_type -101 390 56 5 1400 1048 172 107 10 chr6 106865760 106865966 -42651071 + URR1A DNA MER1_type 1 226 0 5 1400 230 366 121 49 chr6 106866230 106866454 -42650583 + MIRb SINE MIR 29 268 0 5 1400 232 252 132 0 chr6 106867363 106867514 -42649523 - L1MC LINE L1 -3061 3085 2915 5 1400 376 246 123 87 chr6 106867522 106867660 -42649377 + B1F2 SINE Alu 2 144 -5 5 1400 550 311 6 36 chr6 106867702 106867869 -42649168 - RSINE1 SINE B4 -2 163 2 5 1400 890 180 6 0 chr6 106867906 106868084 -42648953 + CT-rich Low_complexity Low_complexity 2 180 0 5 1400 1080 56 0 7 chr6 106868100 106868285 -42648752 - L1_Mus2 LINE L1 0 6566 6417 5 1400 527 289 97 27 chr6 106868303 106868634 -42648403 - L1MC LINE L1 -3319 2827 2474 5 1400 290 67 22 0 chr6 106868639 106868684 -42648353 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 5 1400 587 311 45 13 chr6 106868810 106869120 -42647917 - L1MC LINE L1 -3700 2446 2127 5 1400 22 0 0 0 chr6 106869313 106869335 -42647702 + AT_rich Low_complexity Low_complexity 1 22 0 5 1400 1022 211 100 24 chr6 106869427 106869715 -42647322 - Lx2B LINE L1 -5 6995 6679 5 1400 2109 159 59 9 chr6 106869715 106870159 -42646878 - Lx2B LINE L1 -562 6438 5973 5 1400 388 95 0 31 chr6 106870159 106870224 -42646813 + L1Md_F2 LINE L1 6508 6570 -12 5 1400 1043 110 7 0 chr6 106870561 106870707 -42646330 + B1_Mus1 SINE Alu 2 148 0 5 1400 268 64 0 41 chr6 106870710 106870759 -42646278 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1400 420 259 60 62 chr6 106872067 106872246 -42644791 - B3A SINE B2 0 198 1 5 1400 268 321 46 19 chr6 106872348 106872456 -42644581 - MLT1K LTR MaLR -290 305 195 5 1400 266 258 120 33 chr6 106872730 106872822 -42644215 - MLT1A0 LTR MaLR -2 363 264 5 1400 588 66 11 11 chr6 106873127 106873219 -42643818 + L1_Mm LINE L1 5373 5464 -419 5 1400 195 100 0 0 chr6 106873944 106873974 -42643063 + (TAA)n Simple_repeat Simple_repeat 1 30 0 5 1400 222 37 0 0 chr6 106874259 106874286 -42642751 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1400 28 0 0 0 chr6 106874592 106874620 -42642417 + AT_rich Low_complexity Low_complexity 1 28 0 5 1400 672 104 42 0 chr6 106874858 106875002 -42642035 + (CAGAGA)n Simple_repeat Simple_repeat 1 150 0 5 1400 181 231 26 0 chr6 106875162 106875201 -42641836 + L4 LINE RTE 1786 1825 -204 5 1400 402 21 0 0 chr6 106875488 106875535 -42641502 + (TAA)n Simple_repeat Simple_repeat 2 48 0 5 1400 383 317 94 33 chr6 106876331 106876543 -42640494 + MIR SINE MIR 33 257 -5 5 1400 387 0 0 0 chr6 106876574 106876617 -42640420 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1400 261 57 0 0 chr6 106876617 106876651 -42640386 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1400 561 236 11 130 chr6 106876744 106876929 -42640108 + RSINE1 SINE B4 3 165 0 5 1400 375 178 0 0 chr6 106876932 106877033 -42640004 + GA-rich Low_complexity Low_complexity 2 102 0 5 1400 3122 230 114 7 chr6 106877203 106878074 -42638963 - Lx6 LINE L1 -9 7451 6488 6 1400 243 242 136 39 chr6 106878493 106878596 -42638441 + ORR1E LTR MaLR 23 135 -224 6 1400 1426 281 39 37 chr6 106879120 106879605 -42637432 + RCHARR1 DNA MER1_type 8 493 -481 6 1400 643 179 0 11 chr6 106879753 106879934 -42637103 + GA-rich Low_complexity Low_complexity 2 180 0 6 1400 462 79 0 0 chr6 106879975 106880038 -42636999 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 1400 573 28 0 0 chr6 106880038 106880108 -42636929 + (GA)n Simple_repeat Simple_repeat 2 72 0 6 1400 1334 213 68 24 chr6 106880940 106881310 -42635727 + RCHARR1 DNA MER1_type 467 852 -122 6 1400 2975 41 14 0 chr6 106881317 106881686 -42635351 - L1Md_T LINE L1 0 6582 6209 6 1400 6284 134 10 10 chr6 106881686 106883115 -42633922 - Lx LINE L1 -34 6620 5189 6 1400 2195 76 14 3 chr6 106883114 106883459 -42633578 - MusHAL1 LINE L1 -1717 995 647 6 1400 888 198 36 181 chr6 106883459 106883823 -42633214 - RLTRETN_Mm LTR ERVK 0 322 12 6 1400 4740 90 17 16 chr6 106883827 106885118 -42631919 - MusHAL1 LINE L1 -2059 1294 4 6 1400 505 213 28 49 chr6 106885130 106885273 -42631764 + RCHARR1 DNA MER1_type 835 974 0 6 1400 4032 65 4 4 chr6 106885279 106885833 -42631204 - L1_Mur1 LINE L1 -675 5211 4658 6 1400 825 110 0 8 chr6 106885824 106885952 -42631085 + Lx3_Mus LINE L1 6394 6520 -489 6 1400 1536 125 31 0 chr6 106885946 106886202 -42630835 + Lx3_Mus LINE L1 6707 6970 -39 6 1400 681 105 37 8 chr6 106886184 106886318 -42630719 + Lx3_Mus LINE L1 6872 7009 0 6 1400 343 351 104 41 chr6 106886376 106886574 -42630463 + B4 SINE B4 3 210 -82 6 1400 618 14 0 0 chr6 106886574 106886645 -42630392 + (GA)n Simple_repeat Simple_repeat 1 71 0 6 1400 343 351 104 41 chr6 106886645 106886666 -42630371 + B4 SINE B4 211 235 -57 6 1400 236 324 111 51 chr6 106886850 106886967 -42630070 - LTR86B2 LTR ERVL -74 419 296 6 1400 239 383 95 35 chr6 106887020 106887220 -42629817 - LTR86B2 LTR ERVL -263 224 13 6 1400 370 133 0 0 chr6 106887325 106887385 -42629652 - Lx6 LINE L1 -2270 3610 3551 6 1400 10122 174 23 41 chr6 106887381 106889767 -42627270 + Lx6 LINE L1 3606 5954 -1096 6 1400 2196 261 77 27 chr6 106889833 106890538 -42626499 + Lx6 LINE L1 6665 7404 -56 6 1400 198 118 0 0 chr6 106890598 106890632 -42626405 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 6 1400 193 377 64 35 chr6 106891413 106891586 -42625451 + L2 LINE L2 2580 2757 -662 6 1400 649 319 11 16 chr6 106891598 106891783 -42625254 - MER5A DNA MER1_type -5 184 1 6 1400 831 320 35 41 chr6 106894121 106894411 -42622626 + B4 SINE B4 3 290 -2 6 1400 346 283 233 35 chr6 106894557 106894729 -42622308 - MIR SINE MIR -28 234 29 6 1400 198 0 0 0 chr6 106894789 106894811 -42622226 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1400 282 56 0 0 chr6 106894929 106894965 -42622072 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 6 1400 344 270 206 0 chr6 106894966 106895092 -42621945 - RSINE1 SINE B4 -10 155 4 6 1400 3385 203 44 13 chr6 106895152 106895924 -42621113 + Lx2B LINE L1 6203 6998 -2 6 1400 422 317 52 14 chr6 106896666 106896877 -42620160 + MER20 DNA MER1_type 1 219 0 6 1400 393 260 10 0 chr6 106897838 106897934 -42619103 + PB1D10 SINE Alu 2 98 -19 6 1400 933 140 162 20 chr6 106897940 106898137 -42618900 - URR1A DNA MER1_type -1 225 1 6 1400 588 327 97 26 chr6 106898260 106898602 -42618435 - Lx8 LINE L1 -309 7164 6799 6 1400 276 292 0 53 chr6 106898628 106898722 -42618315 + Lx7 LINE L1 6921 7009 -687 6 1400 628 216 179 0 chr6 106898736 106898926 -42618111 + Lx8 LINE L1 7119 7342 -131 6 1400 1084 179 96 82 chr6 106899051 106899241 -42617796 - ORR1C2 LTR MaLR -2 382 192 6 1400 522 31 0 0 chr6 106899241 106899305 -42617732 + (GA)n Simple_repeat Simple_repeat 2 65 0 6 1400 1084 200 88 92 chr6 106899305 106899433 -42617604 - ORR1C2 LTR MaLR -193 191 37 6 1400 310 216 0 0 chr6 106899438 106899512 -42617525 - ORR1C2-int LTR MaLR -866 643 570 6 1400 458 139 12 12 chr6 106899513 106899593 -42617444 - ORR1C2 LTR MaLR -302 82 3 6 1400 502 277 8 8 chr6 106899734 106899854 -42617183 + B4A SINE B4 6 125 -167 6 1400 267 260 0 14 chr6 106900013 106900087 -42616950 + GA-rich Low_complexity Low_complexity 2 74 0 6 1400 1098 59 7 0 chr6 106900319 106900455 -42616582 + B1_Mm SINE Alu 2 138 -9 6 1400 336 64 0 0 chr6 106900455 106900502 -42616535 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6 1400 288 339 74 0 chr6 106901290 106901411 -42615626 + L2b LINE L2 3239 3368 -7 6 1400 207 247 0 0 chr6 106901763 106901836 -42615201 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1400 592 331 27 47 chr6 106901854 106902111 -42614926 - B4A SINE B4 0 292 41 6 1400 553 297 50 50 chr6 106902362 106902564 -42614473 + MER106A DNA MER1_type 5 206 -30 6 1400 250 338 48 48 chr6 106903308 106903392 -42613645 - B3A SINE B2 -114 84 1 6 1400 960 262 0 32 chr6 106903430 106903647 -42613390 - B3 SINE B2 0 216 7 6 1400 549 0 0 0 chr6 106904393 106904454 -42612583 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1400 376 284 21 21 chr6 106904659 106904756 -42612281 + RSINE1 SINE B4 28 124 -41 6 1400 849 230 58 5 chr6 106904853 106905058 -42611979 + B3 SINE B2 1 216 0 6 1400 265 272 61 61 chr6 106905107 106905178 -42611859 - MER53 DNA hAT -9 184 111 6 1400 475 328 63 23 chr6 106905178 106905353 -42611684 - B3A SINE B2 -15 183 2 6 1400 265 272 61 61 chr6 106905353 106905461 -42611576 - MER53 DNA hAT -83 110 5 6 1400 668 105 9 17 chr6 106905723 106905839 -42611198 - Lx LINE L1 -3 6651 6537 6 1400 652 92 335 84 chr6 106905843 106906010 -42611027 - Lx LINE L1 -258 6396 6188 6 1400 259 233 13 40 chr6 106906772 106906848 -42610189 + CT-rich Low_complexity Low_complexity 1 74 0 6 1400 225 346 45 8 chr6 106907182 106907316 -42609721 - B1F SINE Alu -7 142 4 6 1400 226 214 198 73 chr6 106907544 106907640 -42609397 - MER58B DNA MER1_type -135 206 99 6 1400 222 361 105 30 chr6 106908216 106908485 -42608552 + L2a LINE L2 3055 3423 -3 6 1400 228 328 47 94 chr6 106908578 106908706 -42608331 + MIRb SINE MIR 119 240 -28 6 1400 679 166 48 7 chr6 106909050 106909196 -42607841 - Lx3A LINE L1 -8 6973 6822 6 1400 339 307 0 0 chr6 106909660 106909735 -42607302 + B1F2 SINE Alu 9 83 -66 6 1400 247 344 8 8 chr6 106909763 106909895 -42607142 + (CAGAGA)n Simple_repeat Simple_repeat 6 137 0 6 1400 642 325 89 14 chr6 106910250 106910600 -42606437 + MLT1D LTR MaLR 130 505 0 6 1400 362 288 62 31 chr6 106910661 106910790 -42606247 + MER5A1 DNA MER1_type 28 160 -6 6 1400 28 0 0 0 chr6 106911355 106911383 -42605654 + AT_rich Low_complexity Low_complexity 1 28 0 6 1400 180 277 133 70 chr6 106911850 106911978 -42605059 - L2c LINE L2 -200 3187 3052 6 1400 571 337 74 48 chr6 106912092 106912404 -42604633 + MLT1C LTR MaLR 148 467 0 6 1400 314 102 0 33 chr6 106912651 106912712 -42604325 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 6 1400 3594 189 39 7 chr6 106912712 106913401 -42603636 + RMER6D LTR ERVK 4 714 -6 6 1400 321 186 0 0 chr6 106913401 106913471 -42603566 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1400 228 163 0 0 chr6 106913492 106913535 -42603502 + (CACCAT)n Simple_repeat Simple_repeat 6 48 0 6 1400 336 323 0 23 chr6 106914280 106914413 -42602624 + (TCCA)n Simple_repeat Simple_repeat 1 130 0 6 1400 5618 146 54 4 chr6 106914422 106915382 -42601655 + Lx2 LINE L1 5990 6997 0 6 1400 270 0 0 0 chr6 106916962 106916992 -42600045 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1400 324 0 0 0 chr6 106916992 106917027 -42600010 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1400 212 300 18 35 chr6 106917158 106917272 -42599765 + MIR SINE MIR 124 235 -27 6 1400 517 328 90 50 chr6 106917402 106918023 -42599014 - L2a LINE L2 0 3426 2774 6 1400 237 402 0 0 chr6 106918107 106918189 -42598848 + MER63D DNA AcHobo 1 82 -979 6 1400 1954 322 50 31 chr6 106918244 106919156 -42597881 + Lx8 LINE L1 6508 7437 -36 6 1400 250 274 0 46 chr6 106919482 106919547 -42597490 + B4A SINE B4 85 146 -146 6 1400 402 247 0 38 chr6 106919492 106919572 -42597465 + PB1D10 SINE Alu 10 86 -31 6 1400 23 54 0 0 chr6 106919589 106919626 -42597411 + AT_rich Low_complexity Low_complexity 1 37 0 6 1400 1014 61 68 0 chr6 106919626 106919758 -42597279 + B1_Mus1 SINE Alu 2 142 -6 6 1400 831 279 13 30 chr6 106919760 106919993 -42597044 - B4 SINE B4 -41 251 23 6 1400 626 269 64 10 chr6 106920520 106920723 -42596314 - B3 SINE B2 0 216 3 6 1400 386 301 27 95 chr6 106922507 106922654 -42594383 + ORR1E LTR MaLR 6 142 -228 6 1400 1546 231 37 82 chr6 106922703 106923108 -42593929 - MTD LTR MaLR -14 405 19 6 1400 1233 302 22 9 chr6 106923146 106923470 -42593567 + MTE2b LTR MaLR 52 379 0 6 1400 497 254 61 86 chr6 106923472 106923592 -42593445 + ORR1E LTR MaLR 156 269 -90 6 1400 1790 191 135 71 chr6 106923592 106924155 -42592882 + MT2B LTR ERVL 3 601 0 6 1400 497 254 61 86 chr6 106924155 106924232 -42592805 + ORR1E LTR MaLR 270 348 -11 6 1400 544 330 57 73 chr6 106924621 106924697 -42592340 + ORR1D2 LTR MaLR 1 76 -294 6 1400 216 0 0 0 chr6 106924697 106924721 -42592316 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1400 544 330 57 73 chr6 106924721 106924777 -42592260 + ORR1D2 LTR MaLR 77 126 -244 6 1400 249 33 0 0 chr6 106924777 106924807 -42592230 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6 1400 774 162 7 39 chr6 106924807 106924961 -42592076 - Lx4A LINE L1 -5 7053 6905 6 1400 544 330 57 73 chr6 106924961 106925162 -42591875 + ORR1D2 LTR MaLR 127 329 -41 6 1400 3051 20 0 17 chr6 106925162 106925514 -42591523 - ORR1A0 LTR MaLR 0 346 1 6 1400 544 330 57 73 chr6 106925514 106925549 -42591488 + ORR1D2 LTR MaLR 330 364 -6 6 1400 599 322 78 29 chr6 106926140 106926421 -42590616 + MLT1A0 LTR MaLR 43 337 -28 6 1400 500 250 91 8 chr6 106927642 106927763 -42589274 + RSINE1 SINE B4 3 133 -32 6 1400 390 21 0 0 chr6 106927764 106927811 -42589226 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1400 422 327 18 13 chr6 106927820 106928046 -42588991 - L1ME3B LINE L1 -398 5842 5616 6 1400 350 327 94 18 chr6 106928071 106928242 -42588795 - L1ME3B LINE L1 -684 5489 5306 6 1400 227 130 19 0 chr6 106930891 106930945 -42586092 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 6 1400 1272 21 0 0 chr6 106930946 106931091 -42585946 - B1_Mus2 SINE Alu 0 147 3 6 1400 415 111 0 0 chr6 106931128 106931191 -42585846 + B1_Mus2 SINE Alu 74 136 -11 6 1400 189 0 0 0 chr6 106931191 106931212 -42585825 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 6 1400 909 204 188 29 chr6 106931334 106931718 -42585319 + L1MB3 LINE L1 5731 6175 -8 6 1400 744 129 50 50 chr6 106932301 106932440 -42584597 + B1_Mm SINE Alu 9 147 0 6 1400 2526 145 27 12 chr6 106933407 106933820 -42583217 - MTC LTR MaLR -2 419 1 7 1400 406 263 174 55 chr6 106933984 106934210 -42582827 - MTEb LTR MaLR -23 396 161 7 1400 1142 252 94 31 chr6 106934322 106934674 -42582363 + MTD LTR MaLR 13 386 -33 7 1400 398 261 11 0 chr6 106934715 106934807 -42582230 - MTEb LTR MaLR -208 171 79 7 1400 207 100 0 0 chr6 106936240 106936270 -42580767 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 7 1400 5950 61 33 18 chr6 106936273 106937130 -42579907 - L1Md_F2 LINE L1 0 6582 5713 7 1400 962 81 0 0 chr6 106937130 106937266 -42579771 + L1_Mm LINE L1 4863 4998 -885 7 1400 584 298 105 6 chr6 106937901 106938073 -42578964 + B4A SINE B4 103 291 -1 7 1400 189 159 0 0 chr6 106938102 106938146 -42578891 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 7 1400 365 349 57 40 chr6 106938617 106938793 -42578244 - L1ME1 LINE L1 -8 6171 5993 7 1400 288 264 128 43 chr6 106938865 106939122 -42577915 - L1MD LINE L1 -397 5845 5567 7 1400 3608 82 2 4 chr6 106939321 106939797 -42577240 - MT2C_Mm LTR ERVL 0 475 1 7 1400 369 0 0 0 chr6 106939879 106939920 -42577117 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1400 373 323 46 38 chr6 106940209 106940556 -42576481 - Lx8 LINE L1 -162 7311 6962 7 1400 755 173 98 0 chr6 106941174 106941193 -42575844 - B1_Mus2 SINE Alu 0 147 129 7 1400 531 69 0 0 chr6 106941193 106941265 -42575772 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 1400 755 173 98 0 chr6 106941265 106941378 -42575659 - B1_Mus2 SINE Alu -19 128 3 7 1400 683 282 15 10 chr6 106942119 106942316 -42574721 + B3A SINE B2 1 198 0 7 1400 254 335 37 55 chr6 106942756 106942920 -42574117 + MLT1A0 LTR MaLR 1 161 -344 7 1400 338 219 12 12 chr6 106942973 106943056 -42573981 + BC1_Mm scRNA scRNA 6 88 -64 7 1400 765 303 106 29 chr6 106943188 106943681 -42573356 + Lx8 LINE L1 6625 7155 -318 7 1400 523 282 68 34 chr6 106943767 106943943 -42573094 + MLT1A0 LTR MaLR 139 320 -45 7 1400 193 260 20 0 chr6 106943971 106944021 -42573016 + MER5B DNA MER1_type 4 54 -124 7 1400 469 261 34 68 chr6 106944494 106944576 -42572461 + B1F1 SINE Alu 5 85 -64 7 1400 2193 118 12 3 chr6 106944576 106944900 -42572137 + ORR1A2 LTR MaLR 1 327 0 7 1400 469 261 34 68 chr6 106944900 106944951 -42572086 + B1F1 SINE Alu 86 136 -13 7 1400 513 0 0 0 chr6 106944951 106945008 -42572029 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1400 469 261 34 68 chr6 106945008 106945021 -42572016 + B1F1 SINE Alu 137 147 -2 7 1400 217 132 0 0 chr6 106945735 106945773 -42571264 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1400 651 88 0 0 chr6 106945854 106945945 -42571092 + (GA)n Simple_repeat Simple_repeat 2 92 0 7 1400 297 293 49 104 chr6 106947175 106947358 -42569679 + MLT1K LTR MaLR 160 332 -263 7 1400 354 298 76 38 chr6 106947870 106948055 -42568982 + MLT1K LTR MaLR 398 589 -6 7 1400 369 0 0 0 chr6 106948111 106948152 -42568885 + (TA)n Simple_repeat Simple_repeat 1 41 0 7 1400 284 314 0 0 chr6 106948464 106948550 -42568487 + (CA)n Simple_repeat Simple_repeat 2 87 0 7 1400 329 214 11 55 chr6 106948550 106948733 -42568304 + (CATATA)n Simple_repeat Simple_repeat 6 180 0 7 1400 264 100 0 0 chr6 106949538 106949578 -42567459 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 7 1400 712 259 60 69 chr6 106949820 106949967 -42567070 + B3 SINE B2 2 143 -73 7 1400 6854 61 32 8 chr6 106949967 106950874 -42566163 - RLTR13B3 LTR ERVK 0 929 1 7 1400 712 259 60 69 chr6 106950874 106950942 -42566095 + B3 SINE B2 144 215 -1 7 1400 254 356 52 52 chr6 106951040 106951194 -42565843 + MIRb SINE MIR 15 168 -100 7 1400 958 19 0 0 chr6 106951445 106951552 -42565485 + U6 snRNA snRNA 1 107 0 7 1400 1087 51 6 12 chr6 106951552 106951712 -42565325 + L1Md_F2 LINE L1 6423 6581 -1 7 1400 872 288 16 8 chr6 106951797 106952049 -42564988 + RMER1B Other Other 580 833 -233 7 1400 597 260 14 0 chr6 106952067 106952213 -42564824 + RMER1C Other Other 585 732 -610 7 1400 790 64 19 11 chr6 106952216 106952343 -42564694 + RMER17A LTR ERVK 1 135 -754 7 1400 431 225 92 21 chr6 106952324 106952465 -42564572 - RLTR16 LTR ERVK -354 151 1 7 1400 1011 341 11 5 chr6 106952465 106952857 -42564180 + RMER1C Other Other 560 931 -411 7 1400 748 292 30 22 chr6 106953011 106953284 -42563753 - MTE2b LTR MaLR -128 251 18 7 1400 423 306 93 41 chr6 106953331 106953367 -42563670 + MLT1A0 LTR MaLR 162 197 -168 7 1400 266 0 29 0 chr6 106953367 106953401 -42563636 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1400 423 306 93 41 chr6 106953401 106953558 -42563479 + MLT1A0 LTR MaLR 198 365 0 7 1400 316 321 206 27 chr6 106953688 106954090 -42562947 - MLT1F1 LTR MaLR -9 560 16 7 1400 377 179 12 0 chr6 106954106 106954190 -42562847 + GA-rich Low_complexity Low_complexity 3 87 0 7 1400 2042 137 146 63 chr6 106954284 106954681 -42562356 - RLTR23 LTR ERV1 0 430 1 7 1401 396 282 75 17 chr6 106955137 106955310 -42561727 + RLTR41 LTR ERV1 264 446 0 7 1401 609 14 0 0 chr6 106955404 106955474 -42561563 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 1401 201 158 0 0 chr6 106956335 106956373 -42560664 + A-rich Low_complexity Low_complexity 3 40 0 7 1401 360 0 0 0 chr6 106956595 106956635 -42560402 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1401 1981 103 59 7 chr6 106959783 106960086 -42556951 + ORR1A2 LTR MaLR 1 319 -8 7 1401 711 98 134 0 chr6 106960095 106960207 -42556830 + ORR1A3 LTR MaLR 200 326 0 7 1401 425 331 58 58 chr6 106960415 106960604 -42556433 + B3A SINE B2 2 190 -8 7 1401 203 316 93 17 chr6 106961145 106961273 -42555764 - MIRc SINE MIR -24 244 112 7 1401 423 0 0 0 chr6 106961405 106961452 -42555585 + (TTA)n Simple_repeat Simple_repeat 2 48 0 7 1401 316 335 11 75 chr6 106961456 106961630 -42555407 - RSINE1 SINE B4 0 165 3 7 1401 803 75 83 0 chr6 106961637 106961757 -42555280 - ORR1A3 LTR MaLR -8 318 189 7 1401 407 156 0 0 chr6 106961755 106961819 -42555218 - ORR1A3 LTR MaLR -263 64 1 7 1401 195 129 0 0 chr6 106962007 106962038 -42554999 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1401 402 225 56 0 chr6 106962087 106962187 -42554850 - B3A SINE B2 -97 119 1 7 1401 582 79 0 0 chr6 106962882 106962971 -42554066 + (CA)n Simple_repeat Simple_repeat 2 90 0 7 1401 341 239 95 68 chr6 106964694 106964842 -42552195 + Lx8 LINE L1 7258 7409 -64 7 1401 303 347 11 0 chr6 106965127 106965222 -42551815 + RSINE1 SINE B4 67 162 -3 7 1401 946 238 164 43 chr6 106965226 106965647 -42551390 + MT2B LTR ERVL 1 550 -51 7 1401 279 0 0 0 chr6 106965647 106965678 -42551359 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1401 946 231 128 24 chr6 106965678 106965722 -42551315 + MT2B LTR ERVL 551 601 0 7 1401 207 182 0 0 chr6 106965725 106965758 -42551279 + (ATG)n Simple_repeat Simple_repeat 3 35 0 7 1401 803 307 123 84 chr6 106965941 106966691 -42550346 + L1ME3A LINE L1 4457 5235 -911 7 1401 520 327 19 25 chr6 106966732 106966892 -42550145 + B3 SINE B2 1 159 -57 7 1401 3537 56 11 0 chr6 106966940 106967389 -42549648 + L1Md_F2 LINE L1 6129 6582 0 7 1401 327 309 73 78 chr6 106967458 106967662 -42549375 + L1ME3A LINE L1 5272 5474 -699 7 1401 710 225 87 3 chr6 106967683 106967837 -42549200 + B3A SINE B2 3 162 -36 7 1401 297 89 0 0 chr6 106967837 106967882 -42549155 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1401 491 238 65 70 chr6 106967882 106967912 -42549125 + B2_Mm2 SINE B2 160 186 -9 7 1401 552 279 72 39 chr6 106968001 106968362 -42548675 + L1ME3A LINE L1 5593 5965 -208 7 1401 1177 266 60 8 chr6 106970637 106970989 -42546048 - ORR1D2 LTR MaLR 0 370 1 7 1401 867 333 56 4 chr6 106971198 106971466 -42545571 + B4A SINE B4 8 289 -3 7 1401 209 59 59 0 chr6 106971676 106971710 -42545327 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 7 1401 1113 88 0 0 chr6 106972688 106972835 -42544202 - B1_Mus1 SINE Alu 0 148 2 7 1401 360 0 0 0 chr6 106972894 106972934 -42544103 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 7 1401 36926 6 0 1 chr6 106973878 106979650 -42537387 + L1Md_A LINE L1 1 5586 -297 7 1401 9093 1 0 0 chr6 106979650 106980646 -42536391 + L1Md_A LINE L1 5587 6582 0 7 1401 2298 101 3 29 chr6 106980691 106981069 -42535968 + Lx LINE L1 6286 6653 -1 7 1401 593 62 0 58 chr6 106981143 106981246 -42535791 - Lx LINE L1 -241 6413 6317 7 1401 554 269 68 106 chr6 106981256 106981493 -42535544 + B4 SINE B4 64 291 -1 7 1401 529 202 29 9 chr6 106982230 106982335 -42534702 + RSINE1 SINE B4 21 127 -38 7 1401 307 367 29 6 chr6 106982628 106982798 -42534239 + L1MD LINE L1 3730 3903 -2243 7 1401 748 126 0 62 chr6 106983282 106983443 -42533594 + Lx LINE L1 6504 6654 0 7 1401 381 363 71 11 chr6 106984220 106984299 -42532738 + B3A SINE B2 3 91 -107 7 1401 2035 129 73 38 chr6 106984299 106984694 -42532343 + RLTR9E LTR ERVK 1 409 0 7 1401 381 363 71 11 chr6 106984694 106984798 -42532239 + B3A SINE B2 92 196 -2 7 1401 469 368 142 59 chr6 106984941 106986044 -42530993 + L2 LINE L2 1404 2598 -821 7 1401 670 341 23 0 chr6 106986052 106986228 -42530809 + B3A SINE B2 2 181 -17 7 1401 1298 82 16 6 chr6 106986391 106986574 -42530463 + B2_Mm2 SINE B2 2 186 -9 7 1401 436 230 40 0 chr6 106986670 106986770 -42530267 - ID_B1 SINE B4 -118 106 3 7 1401 325 265 44 101 chr6 106986894 106987142 -42529895 + L1MA9 LINE L1 5945 6178 -134 7 1401 833 236 34 15 chr6 106988025 106988231 -42528806 + B3 SINE B2 4 213 -3 7 1401 572 283 42 38 chr6 106988271 106988484 -42528553 + B3 SINE B2 3 216 0 7 1401 4253 252 91 50 chr6 106989056 106990688 -42526349 + RLTR22_Mur LTR ERVK 1 1698 -150 7 1401 300 333 45 37 chr6 106990730 106990864 -42526173 + L1MEd LINE L1 576 710 -5409 7 1401 441 36 0 0 chr6 106991012 106991067 -42525970 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1401 352 272 0 0 chr6 106991079 106991171 -42525866 - Lx9 LINE L1 -203 7441 7350 7 1401 605 333 28 12 chr6 106991195 106991450 -42525587 + Lx8 LINE L1 6827 7085 -388 7 1401 249 83 0 0 chr6 106991906 106991942 -42525095 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1401 246 265 0 0 chr6 106991942 106992010 -42525027 - Lx9 LINE L1 -188 7456 7389 7 1401 301 298 16 8 chr6 106992042 106992167 -42524870 + Lx9 LINE L1 6925 7050 -594 7 1401 3710 138 34 39 chr6 106992264 106992905 -42524132 - Lx LINE L1 0 6654 6017 7 1401 256 262 35 12 chr6 106992950 106993035 -42524002 + Lx9 LINE L1 7204 7290 -354 7 1401 253 227 0 0 chr6 106993357 106993423 -42523614 + Ricksha_c DNA MuDR 380 445 -1603 8 1401 189 294 14 56 chr6 106993501 106993573 -42523464 - L2c LINE L2 -17 3370 3302 8 1401 21 57 0 0 chr6 106993683 106993718 -42523319 + AT_rich Low_complexity Low_complexity 1 35 0 8 1401 360 0 0 0 chr6 106996009 106996049 -42520988 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1401 247 383 24 55 chr6 106996365 106996492 -42520545 + ORR1E LTR MaLR 6 128 -231 8 1401 486 381 110 15 chr6 106997761 106998033 -42519004 - MLT1H1 LTR MaLR -235 320 23 8 1401 1107 76 7 0 chr6 106998155 106998300 -42518737 + B1_Mm SINE Alu 2 147 0 8 1401 533 61 12 0 chr6 106998300 106998382 -42518655 + (CAAAAA)n Simple_repeat Simple_repeat 6 88 0 8 1401 1560 215 197 15 chr6 106998435 106998836 -42518201 + RMER15 LTR ERVL 28 501 -74 8 1401 423 333 168 59 chr6 106999453 106999982 -42517055 - MLT1H1-int LTR MaLR -166 1323 737 8 1401 28 29 0 0 chr6 107000085 107000120 -42516917 + AT_rich Low_complexity Low_complexity 1 35 0 1 1401 3066 60 9 14 chr6 107000821 107001244 -42515793 + BGLII LTR ERVK 1 421 0 2 1401 30 0 0 0 chr6 107001434 107001464 -42515573 + AT_rich Low_complexity Low_complexity 1 30 0 3 1401 214 315 0 53 chr6 107002767 107002861 -42514176 + CT-rich Low_complexity Low_complexity 4 92 0 4 1401 194 57 57 0 chr6 107002995 107003030 -42514007 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1401 317 255 0 126 chr6 107003167 107003292 -42513745 - PB1D7 SINE Alu 0 120 10 6 1401 484 264 77 8 chr6 107003328 107003458 -42513579 + B1F1 SINE Alu 10 148 -1 7 1401 22 0 0 0 chr6 107003535 107003557 -42513480 + AT_rich Low_complexity Low_complexity 1 22 0 8 1401 311 366 30 59 chr6 107003618 107003955 -42513082 + L1ME3A LINE L1 2076 2402 -3764 9 1401 717 271 59 0 chr6 107003975 107004178 -42512859 + B3 SINE B2 2 216 0 1 1401 503 284 59 16 chr6 107004311 107004497 -42512540 + B3A SINE B2 1 194 -4 1 1401 235 286 173 11 chr6 107004599 107004790 -42512247 + L1ME3A LINE L1 2759 2980 -3166 9 1401 885 317 5 5 chr6 107004879 107005098 -42511939 + ID_B1 SINE B4 4 222 -2 1 1401 331 186 14 14 chr6 107005362 107005433 -42511604 - ID4_ SINE ID -10 73 3 1 1401 469 295 44 56 chr6 107005477 107006017 -42511020 + L1ME3A LINE L1 5347 5880 -564 9 1401 2935 43 0 3 chr6 107006033 107006380 -42510657 - ORR1A1 LTR MaLR 0 346 1 1 1401 985 313 7 54 chr6 107006629 107006926 -42510111 + B4A SINE B4 4 286 -6 1 1401 226 309 0 0 chr6 107006938 107006993 -42510044 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1 1401 405 0 0 0 chr6 107007038 107007083 -42509954 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1401 625 278 69 43 chr6 107007413 107007601 -42509436 - B3A SINE B2 0 198 6 1 1401 206 128 0 41 chr6 107007823 107007872 -42509165 + T-rich Low_complexity Low_complexity 4 50 0 1 1401 360 217 0 0 chr6 107007987 107008056 -42508981 + RLTR25A LTR ERVK 1 69 -1034 2 1401 1768 192 20 77 chr6 107008057 107008458 -42508579 - RLTR1B LTR ERV1 0 512 135 2 1401 4103 155 43 15 chr6 107008545 107009161 -42507876 + RLTR25A LTR ERVK 67 697 -406 2 1401 195 42 0 0 chr6 107009161 107009185 -42507852 + (GAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1401 4103 155 43 15 chr6 107009185 107009310 -42507727 + RLTR25A LTR ERVK 698 828 -275 2 1401 1140 196 17 9 chr6 107009313 107009536 -42507501 + RLTR11B LTR ERVK 39 263 -190 2 1401 1677 149 49 57 chr6 107009536 107009941 -42507096 + RMER17C LTR ERVK 1 402 -8 2 1401 1330 116 5 0 chr6 107009992 107010182 -42506855 + RLTR11B LTR ERVK 260 450 -3 2 1401 1427 215 137 49 chr6 107010181 107010591 -42506446 + RLTR41 LTR ERV1 1 446 0 2 1401 915 200 15 53 chr6 107010596 107010802 -42506235 + RLTR25A LTR ERVK 906 1103 0 2 1401 292 22 44 0 chr6 107010827 107010872 -42506165 + (CAA)n Simple_repeat Simple_repeat 2 48 0 2 1401 622 299 82 9 chr6 107010927 107011160 -42505877 - Tigger6a DNA MER2_type -828 255 6 2 1401 973 263 60 5 chr6 107011211 107011429 -42505608 + B4A SINE B4 53 282 -10 2 1401 441 95 0 0 chr6 107011432 107011495 -42505542 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1401 1026 245 96 11 chr6 107011786 107012120 -42504917 - ORR1D2 LTR MaLR -2 372 1 3 1401 342 302 16 1 chr6 107012297 107012391 -42504646 + PB1D10 SINE Alu 1 97 -52 3 1401 2821 68 5 5 chr6 107014231 107014600 -42502437 - L1Md_F2 LINE L1 -12 6570 6202 3 1401 478 272 164 35 chr6 107015062 107015294 -42501743 - LTR16B1 LTR ERVL -13 467 206 3 1401 546 252 134 52 chr6 107015548 107015816 -42501221 + L1MA5A LINE L1 5538 5827 -470 3 1401 311 370 8 8 chr6 107016830 107016845 -42500192 + ID SINE ID 68 82 -142 3 1401 322 341 79 8 chr6 107016845 107016972 -42500065 + B1F1 SINE Alu 3 138 -11 3 1401 196 245 32 0 chr6 107017001 107017095 -42499942 + GA-rich Low_complexity Low_complexity 5 101 0 3 1401 222 37 0 0 chr6 107017581 107017608 -42499429 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1401 567 0 0 0 chr6 107017608 107017670 -42499367 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1401 23 0 0 0 chr6 107017818 107017841 -42499196 + AT_rich Low_complexity Low_complexity 1 23 0 4 1401 8106 148 19 30 chr6 107017841 107019419 -42497618 - Lx4A LINE L1 0 7058 5465 4 1401 444 340 20 5 chr6 107019663 107019861 -42497176 - Lx8 LINE L1 -200 7273 7073 4 1401 213 47 22 44 chr6 107019908 107019953 -42497084 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1401 500 280 0 27 chr6 107019976 107020086 -42496951 + RSINE1 SINE B4 11 117 -48 4 1401 814 133 7 7 chr6 107020088 107020239 -42496798 + (TTTC)n Simple_repeat Simple_repeat 1 151 0 4 1401 269 113 19 0 chr6 107020246 107020299 -42496738 - Lx LINE L1 -8 6646 6593 4 1401 534 91 0 0 chr6 107020321 107020398 -42496639 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1401 30904 78 1 6 chr6 107020514 107025712 -42491325 + L1Md_F2 LINE L1 318 5589 -297 4 1401 8063 50 2 0 chr6 107025712 107026705 -42490332 + L1Md_F2 LINE L1 5590 6584 -1 4 1401 236 143 143 0 chr6 107026785 107026841 -42490196 + Lx5 LINE L1 6987 7050 0 4 1401 247 252 124 47 chr6 107027972 107028101 -42488936 + MER34 LTR ERV1 388 526 -16 5 1401 381 289 135 19 chr6 107028123 107028441 -42488596 + L1MB7 LINE L1 5814 6168 -16 5 1401 512 324 85 72 chr6 107028755 107029131 -42487906 - MLT1B LTR MaLR -3 387 7 5 1401 736 127 42 0 chr6 107029564 107029682 -42487355 - ORR1B1 LTR MaLR -8 386 264 5 1401 1439 215 143 5 chr6 107029682 107030311 -42486726 - ORR1B1-int LTR MaLR -386 1123 407 5 1401 385 241 241 48 chr6 107030316 107030565 -42486472 - Lx9 LINE L1 -434 7210 6914 5 1401 285 29 0 0 chr6 107030653 107030687 -42486350 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1401 386 352 56 12 chr6 107030687 107030848 -42486189 + B4A SINE B4 114 281 -11 5 1401 968 302 66 29 chr6 107031165 107031683 -42485354 + L1MB3 LINE L1 5580 6116 -67 5 1401 35 41 0 0 chr6 107032099 107032148 -42484889 + AT_rich Low_complexity Low_complexity 1 49 0 5 1401 270 288 15 0 chr6 107032934 107033000 -42484037 - RSINE1 SINE B4 -41 124 58 5 1401 1205 104 164 10 chr6 107033339 107033534 -42483503 + URR1A DNA MER1_type 1 225 -1 6 1401 203 0 37 0 chr6 107034096 107034123 -42482914 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 6 1401 192 77 0 0 chr6 107034337 107034363 -42482674 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1401 1197 179 9 22 chr6 107034803 107035031 -42482006 + URR1A DNA MER1_type 1 225 -1 6 1401 25 0 0 0 chr6 107037407 107037432 -42479605 + AT_rich Low_complexity Low_complexity 1 25 0 6 1401 1733 262 136 8 chr6 107037872 107038395 -42478642 - RCHARR1 DNA MER1_type -376 598 9 6 1401 340 237 21 21 chr6 107038402 107038497 -42478540 - MER2 DNA MER2_type -133 212 118 6 1401 583 254 66 66 chr6 107038798 107038979 -42478058 - B3A SINE B2 -16 182 2 6 1401 21 89 0 0 chr6 107039314 107039370 -42477667 + AT_rich Low_complexity Low_complexity 1 56 0 6 1401 327 282 154 0 chr6 107039835 107039945 -42477092 - RSINE1 SINE B4 -22 143 17 6 1401 990 90 0 83 chr6 107040744 107040845 -42476192 + B1_Mus1 SINE Alu 1 101 -47 7 1401 4219 76 0 0 chr6 107040845 107041395 -42475642 + L1Md_T LINE L1 6033 6582 0 7 1401 990 90 0 83 chr6 107041395 107041450 -42475587 + B1_Mus1 SINE Alu 102 144 -4 7 1401 262 0 26 26 chr6 107041453 107041492 -42475545 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1401 225 244 92 23 chr6 107041687 107041817 -42475220 - L1M LINE L1 -732 5392 5254 7 1401 3099 37 29 3 chr6 107042228 107042603 -42474434 - IAPEY_LTR LTR ERVK 0 385 1 7 1401 2743 211 33 68 chr6 107042603 107043359 -42473678 + RMER1A Other Other 301 1030 0 7 1401 377 0 42 0 chr6 107044104 107044152 -42472885 + (CAAAAA)n Simple_repeat Simple_repeat 2 51 0 7 1401 305 375 8 38 chr6 107044340 107044473 -42472564 + RSINE1 SINE B4 2 130 -35 7 1401 222 389 35 0 chr6 107045280 107045313 -42471724 + B1F1 SINE Alu 6 121 -27 7 1401 286 333 0 13 chr6 107045313 107045392 -42471645 + ID_B1 SINE B4 122 199 -25 7 1401 1780 212 39 59 chr6 107046279 107046925 -42470112 + L1_Rod LINE L1 4146 4778 -1069 8 1401 34801 42 13 11 chr6 107046940 107048583 -42468454 - L1Md_T LINE L1 0 6582 4919 8 1401 232 183 46 77 chr6 107048583 107048648 -42468389 + RMER20A LTR ERVK 186 248 -268 8 1401 34801 42 13 11 chr6 107048648 107052313 -42464724 - L1Md_T LINE L1 0 4918 1203 8 1401 8431 64 1 12 chr6 107052279 107053523 -42463514 - L1Md_Gf LINE L1 -5380 1142 1 8 1401 681 13 0 0 chr6 107055504 107055582 -42461455 + (TC)n Simple_repeat Simple_repeat 2 79 0 8 1401 396 0 0 0 chr6 107055582 107055625 -42461412 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1401 189 74 0 0 chr6 107056177 107056204 -42460833 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 8 1401 345 100 0 0 chr6 107056260 107056310 -42460727 + (GA)n Simple_repeat Simple_repeat 2 51 0 8 1401 267 282 79 39 chr6 107056310 107056513 -42460524 + L1MEc LINE L1 358 568 -5832 8 1401 1403 279 133 29 chr6 107056986 107057649 -42459388 + Lx8 LINE L1 6742 7473 0 8 1401 21 36 0 0 chr6 107057649 107057677 -42459360 + AT_rich Low_complexity Low_complexity 1 28 0 9 1401 4724 105 49 1 chr6 107057706 107058740 -42458297 + L1Md_F2 LINE L1 404 1495 -4388 9 1401 1064 76 13 0 chr6 107058750 107058908 -42458129 + L1Md_F2 LINE L1 2500 2659 -3224 9 1401 13669 65 2 7 chr6 107058908 107059619 -42457418 + L1Md_F2 LINE L1 3715 4423 -1460 9 1401 2263 131 3 72 chr6 107059619 107060005 -42457032 - RLTR10D LTR ERVK 0 359 1 9 1401 13669 65 2 7 chr6 107060005 107061173 -42455864 + L1Md_F2 LINE L1 4424 5584 -299 9 1401 7318 77 11 3 chr6 107061175 107062160 -42454877 + L1Md_F2 LINE L1 5587 6579 -3 9 1401 819 276 24 5 chr6 107062676 107062887 -42454150 - B3 SINE B2 -1 215 1 9 1401 346 322 128 81 chr6 107063606 107063903 -42453134 + ORR1E LTR MaLR 29 339 -20 9 1401 281 304 37 37 chr6 107063961 107064043 -42452994 + B1F2 SINE Alu 1 82 -67 9 1401 195 344 51 72 chr6 107064233 107064371 -42452666 - L2a LINE L2 -36 3390 3256 9 1401 243 0 0 0 chr6 107064385 107064412 -42452625 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1401 180 0 0 0 chr6 107064412 107064431 -42452606 + (GA)n Simple_repeat Simple_repeat 2 21 0 9 1401 21 0 0 0 chr6 107065609 107065630 -42451407 + AT_rich Low_complexity Low_complexity 1 21 0 9 1401 255 68 65 39 chr6 107066456 107066533 -42450504 + A-rich Low_complexity Low_complexity 2 80 0 1 1401 866 217 70 12 chr6 107067823 107068066 -42448971 + Lx3C LINE L1 866 1122 -5862 1 1401 335 148 0 0 chr6 107068068 107068122 -42448915 + B2_Mm2 SINE B2 4 57 -138 1 1401 189 0 0 0 chr6 107068127 107068148 -42448889 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1401 4641 6 0 0 chr6 107068304 107068817 -42448220 - L1Md_A LINE L1 0 6582 6070 1 1401 3606 0 0 0 chr6 107068817 107069233 -42447804 + L1Md_A LINE L1 5652 6067 -515 1 1401 469 198 52 12 chr6 107069233 107069366 -42447671 + B2_Mm2 SINE B2 49 192 -24 1 1401 12913 161 225 68 chr6 107069366 107071178 -42445859 + Lx3C LINE L1 1128 2992 -2892 1 1401 621 206 32 74 chr6 107071178 107071367 -42445670 + RMER17A2 LTR ERVK 627 887 -19 1 1401 2394 48 0 0 chr6 107071369 107071658 -42445379 + L1_Mus1 LINE L1 6279 6567 0 1 1401 12913 165 176 49 chr6 107071658 107074778 -42442259 + Lx3C LINE L1 2995 6972 -4 1 1401 507 288 7 0 chr6 107075851 107076004 -42441033 + L1M2 LINE L1 5633 5786 -505 1 1401 306 0 0 0 chr6 107076526 107076560 -42440477 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1401 252 0 0 0 chr6 107076560 107076587 -42440450 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1401 946 110 44 0 chr6 107078375 107078511 -42438526 + B1_Mus1 SINE Alu 1 142 -6 1 1401 221 159 0 0 chr6 107078512 107078556 -42438481 + A-rich Low_complexity Low_complexity 5 48 0 1 1401 2018 229 31 9 chr6 107080776 107081229 -42435808 - Lx5 LINE L1 -3 7047 6585 1 1401 2085 188 2 8 chr6 107081224 107081626 -42435411 + Lx5 LINE L1 6190 6589 -461 1 1401 275 332 100 44 chr6 107081998 107082053 -42434984 + L2a LINE L2 2323 2389 -1030 1 1401 414 53 0 0 chr6 107082053 107082110 -42434927 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1401 275 332 100 44 chr6 107082110 107082303 -42434734 + L2a LINE L2 2390 2584 -835 1 1401 436 312 9 9 chr6 107082539 107082649 -42434388 + PB1D10 SINE Alu 8 117 0 1 1401 7094 58 4 3 chr6 107082697 107083642 -42433395 - L1_Mus1 LINE L1 -2 6565 5620 1 175 26431 125 29 4 chr6 107083644 107088693 -42428344 - L1_Mus1 LINE L1 -375 5508 332 1 1402 201 415 0 16 chr6 107088757 107088882 -42428155 + L2a LINE L2 2995 3117 -309 1 1402 386 305 181 16 chr6 107089163 107089466 -42427571 + L1M5 LINE L1 5261 5613 -627 1 1402 32191 53 12 15 chr6 107089775 107094744 -42422293 + L1Md_Gf LINE L1 1 4937 -949 1 1402 228 183 46 77 chr6 107094744 107094809 -42422228 - RMER20A LTR ERVK -268 248 186 1 1402 32191 53 12 15 chr6 107094809 107095464 -42421573 + L1Md_Gf LINE L1 4938 5589 -297 1 1402 8514 31 0 0 chr6 107095464 107096457 -42420580 + L1Md_T LINE L1 5587 6579 -3 1 1402 27 49 0 0 chr6 107097147 107097188 -42419849 + AT_rich Low_complexity Low_complexity 1 41 0 1 1402 834 325 40 58 chr6 107097352 107097908 -42419129 + Lx8 LINE L1 6923 7468 -5 1 1402 261 294 143 29 chr6 107098426 107098531 -42418506 + LTR52 LTR ERVL 1 117 -304 1 1402 436 301 26 57 chr6 107098573 107098767 -42418270 + LTR52 LTR ERVL 112 299 -122 1 1402 311 0 26 0 chr6 107098771 107098810 -42418227 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1402 2886 190 17 29 chr6 107098971 107099628 -42417409 + Lx6 LINE L1 543 1191 -6537 1 1402 2719 72 8 0 chr6 107099626 107100014 -42417023 - Lx3_Mus LINE L1 -569 6440 6050 1 1402 18884 170 56 43 chr6 107100063 107101839 -42415198 + Lx6 LINE L1 1153 3014 -2866 1 1402 2529 123 7 56 chr6 107101839 107102189 -42414848 + ORR1B1 LTR MaLR 1 351 -43 1 1402 699 263 67 6 chr6 107102189 107102369 -42414668 + B3A SINE B2 2 192 -6 1 1402 2529 123 7 56 chr6 107102369 107102432 -42414605 + ORR1B1 LTR MaLR 352 394 0 1 1402 18884 186 54 36 chr6 107102432 107106506 -42410531 + Lx6 LINE L1 3015 7110 -350 1 1402 350 345 90 33 chr6 107107197 107107497 -42409540 - L1M5 LINE L1 -1555 4591 4275 1 1402 674 287 15 10 chr6 107107670 107107867 -42409170 - B3A SINE B2 0 198 1 1 1402 7476 60 2 2 chr6 107108053 107109114 -42407923 - L1Md_F2 LINE L1 -16 6566 5506 1 1402 710 225 0 0 chr6 107109487 107109638 -42407399 - Lx9 LINE L1 -791 6853 6703 1 1402 969 274 95 6 chr6 107109652 107110011 -42407026 + Lx9 LINE L1 7126 7516 -128 1 1402 269 197 15 0 chr6 107110012 107110078 -42406959 + (TATG)n Simple_repeat Simple_repeat 4 70 0 1 1402 1657 236 44 5 chr6 107110092 107110500 -42406537 - RLTR11A2 LTR ERVK 0 527 104 1 1402 21 36 0 0 chr6 107110629 107110657 -42406380 + AT_rich Low_complexity Low_complexity 1 28 0 1 1402 1289 282 86 26 chr6 107111299 107111765 -42405272 + Lx8 LINE L1 6978 7471 -2 1 1402 194 136 0 22 chr6 107112201 107112246 -42404791 + GA-rich Low_complexity Low_complexity 2 45 0 1 1402 26 30 0 0 chr6 107112555 107112588 -42404449 + AT_rich Low_complexity Low_complexity 1 33 0 1 1402 2331 180 2 19 chr6 107112600 107113024 -42404013 + MTC LTR MaLR 1 417 -4 1 1402 288 234 51 13 chr6 107113026 107113104 -42403933 - L1MA6 LINE L1 -38 6262 6182 1 1402 345 279 43 22 chr6 107113255 107113394 -42403643 + L1MA6 LINE L1 5842 5983 -317 1 1402 1974 140 38 23 chr6 107114042 107114386 -42402651 + Lx LINE L1 6302 6650 -4 1 1402 382 225 34 0 chr6 107116803 107116892 -42400145 - RMER30 DNA MER1_type -1 201 110 1 1402 330 379 15 15 chr6 107116899 107117033 -42400004 + B3 SINE B2 1 134 -82 1 1402 486 0 0 0 chr6 107117046 107117100 -42399937 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1402 525 16 0 0 chr6 107117100 107117161 -42399876 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1402 345 310 0 0 chr6 107117191 107117278 -42399759 - RMER30 DNA MER1_type -111 91 5 1 1402 639 57 0 0 chr6 107117697 107117785 -42399252 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1402 890 339 14 7 chr6 107117790 107118075 -42398962 - Tigger12c DNA MER2_type -443 291 5 1 1402 284 339 56 36 chr6 107118685 107118881 -42398156 + Lx8 LINE L1 7127 7326 -147 1 1402 267 330 69 9 chr6 107119894 107120010 -42397027 - MIRb SINE MIR -16 252 130 1 1402 1092 30 0 0 chr6 107120208 107120340 -42396697 + (TG)n Simple_repeat Simple_repeat 2 133 0 1 1402 577 330 45 122 chr6 107120390 107120701 -42396336 - B4A SINE B4 -4 288 2 1 1402 31 44 0 0 chr6 107120960 107121005 -42396032 + AT_rich Low_complexity Low_complexity 1 45 0 1 1402 28 29 0 0 chr6 107121065 107121100 -42395937 + AT_rich Low_complexity Low_complexity 1 35 0 1 1402 416 306 117 7 chr6 107121121 107121266 -42395771 - RSINE1 SINE B4 -3 162 2 1 1402 2434 189 51 12 chr6 107121293 107121779 -42395258 - RLTR16 LTR ERVK 0 505 1 1 1402 1604 65 17 8 chr6 107121891 107122125 -42394912 + L1_Mus2 LINE L1 6331 6566 0 1 1402 3081 184 5 28 chr6 107122599 107123176 -42393861 + RLTR12A LTR ERVK 1 564 -4 1 1402 254 100 0 0 chr6 107123556 107123596 -42393441 - L1_Mm LINE L1 -1002 4881 4842 1 1402 863 174 0 0 chr6 107123593 107123742 -42393295 + L1_Mur2 LINE L1 5004 5152 -725 1 1402 4114 124 26 2 chr6 107123745 107124357 -42392680 + Lx LINE L1 6024 6650 -4 1 1402 552 261 37 32 chr6 107124503 107124743 -42392294 + ORR1D2 LTR MaLR 1 248 -111 1 1402 7935 14 0 0 chr6 107124743 107125803 -42391234 - L1Md_A LINE L1 -95 6487 5428 1 1402 493 319 65 8 chr6 107125803 107126007 -42391030 + ORR1D2 LTR MaLR 126 350 -9 1 1402 2782 185 60 20 chr6 107126072 107126672 -42390365 - Lx9 LINE L1 -7 7637 7014 1 1402 1250 214 19 8 chr6 107126696 107126959 -42390078 - Lx9 LINE L1 -736 6908 6643 1 1402 572 216 125 28 chr6 107126962 107127187 -42389850 - Lx9 LINE L1 -982 6662 6301 1 1402 382 275 0 0 chr6 107127185 107127294 -42389743 + Lx9 LINE L1 6925 7033 -611 1 1402 491 256 57 8 chr6 107128124 107128246 -42388791 + B3 SINE B2 84 211 -5 1 1402 388 313 24 120 chr6 107128289 107128456 -42388581 + B4A SINE B4 2 152 -140 1 1402 623 306 77 0 chr6 107130375 107130545 -42386492 + B3A SINE B2 5 187 -11 1 1402 3198 118 47 4 chr6 107131099 107131593 -42385444 - Lx3C LINE L1 -2 6974 6460 1 1402 2959 100 41 13 chr6 107131593 107131782 -42385255 + Lx3C LINE L1 5973 6169 -807 1 1402 243 0 0 0 chr6 107131782 107131809 -42385228 + (TGG)n Simple_repeat Simple_repeat 1 27 0 1 1402 2959 100 41 13 chr6 107131809 107132083 -42384954 + Lx3C LINE L1 6170 6449 -527 1 1402 278 148 0 18 chr6 107132261 107132316 -42384721 + G-rich Low_complexity Low_complexity 5 58 0 1 1402 225 0 0 0 chr6 107132787 107132812 -42384225 + (TACTG)n Simple_repeat Simple_repeat 1 25 0 1 1402 207 340 34 11 chr6 107133602 107133701 -42383336 - L2a LINE L2 0 3426 3275 1 1402 208 349 0 35 chr6 107134229 107134342 -42382695 + MIR SINE MIR 119 227 -35 1 1402 774 225 28 37 chr6 107135398 107135637 -42381400 + RLTR31_Mur LTR ERVK 332 559 -2 1 1402 772 270 92 12 chr6 107135742 107135982 -42381055 + B4A SINE B4 1 259 -33 1 1402 387 0 0 0 chr6 107135994 107136037 -42381000 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1402 234 0 0 0 chr6 107136103 107136129 -42380908 + (TAAAAA)n Simple_repeat Simple_repeat 5 30 0 1 1402 459 0 0 0 chr6 107136147 107136198 -42380839 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1402 191 36 36 0 chr6 107136674 107136702 -42380335 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1402 1753 223 37 30 chr6 107137169 107137576 -42379461 + MTD LTR MaLR 1 410 -9 1 1402 704 227 46 11 chr6 107137903 107138077 -42378960 - B3A SINE B2 -17 181 2 1 1402 207 0 0 0 chr6 107138947 107138970 -42378067 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1402 3121 46 5 13 chr6 107140281 107140675 -42376362 + L1Md_F3 LINE L1 6193 6583 -1 1 1402 318 354 5 39 chr6 107141613 107141653 -42375384 - Lx7 LINE L1 -1106 6367 6332 1 1402 202 29 0 54 chr6 107141653 107141690 -42375347 + (TTATA)n Simple_repeat Simple_repeat 4 38 0 1 1402 335 327 14 18 chr6 107141690 107141852 -42375185 - Lx7 LINE L1 -1142 6331 6172 1 1402 253 233 33 0 chr6 107141854 107141914 -42375123 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 1 1402 186 71 0 0 chr6 107142166 107142194 -42374843 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1402 387 0 0 0 chr6 107143456 107143499 -42373538 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1402 447 335 95 38 chr6 107143578 107143789 -42373248 - B4A SINE B4 -69 223 1 1 1402 495 179 0 0 chr6 107144675 107144781 -42372256 + (CA)n Simple_repeat Simple_repeat 2 107 0 1 1402 722 260 147 26 chr6 107144860 107145125 -42371912 - Lx8 LINE L1 -6 7467 7171 1 1402 221 297 145 23 chr6 107145158 107145289 -42371748 - L3 LINE CR1 -309 4180 4034 1 1402 2052 153 3 0 chr6 107147449 107147762 -42369275 - ORR1A2 LTR MaLR -13 314 1 1 1402 390 202 74 11 chr6 107147823 107147918 -42369119 - RMER4B LTR ERVK -19 566 466 1 1402 970 193 76 0 chr6 107148106 107148303 -42368734 - RMER4B LTR ERVK -357 228 17 1 1402 4146 97 0 7 chr6 107149343 107149923 -42367114 + L1_Mus1 LINE L1 5992 6567 0 2 1402 443 235 115 50 chr6 107151769 107151908 -42365129 - B1_Mur3 SINE Alu 0 149 2 2 1402 309 51 0 0 chr6 107153163 107153202 -42363835 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 2 1402 204 40 0 0 chr6 107153202 107153226 -42363811 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1402 263 239 28 0 chr6 107153330 107153401 -42363636 + GA-rich Low_complexity Low_complexity 4 76 0 2 1402 982 277 62 41 chr6 107154501 107154870 -42362167 - MTEa LTR MaLR 0 379 3 2 1402 30 27 0 0 chr6 107155623 107155660 -42361377 + AT_rich Low_complexity Low_complexity 1 37 0 2 1402 677 239 67 45 chr6 107155983 107156206 -42360831 - Lx8 LINE L1 -4 7469 7242 2 1402 607 285 133 33 chr6 107156448 107157131 -42359906 + L1MEg LINE L1 832 1629 -4571 2 1402 432 0 0 0 chr6 107157570 107157618 -42359419 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1402 2619 216 25 2 chr6 107157618 107158129 -42358908 - RLTR20B1 LTR ERVK -38 525 3 2 1402 6090 158 55 8 chr6 107158134 107159332 -42357705 - MYSERV16_I-int LTR ERVK -5 2321 1067 2 1402 4235 171 59 64 chr6 107159337 107160274 -42356763 - MYSERV16_I-int LTR ERVK -1394 932 1 2 1402 264 174 64 85 chr6 107160985 107161079 -42355958 - RMER3D-int LTR ERVK -1727 1115 1024 2 1402 262 62 0 0 chr6 107161490 107161538 -42355499 - L1Md_F2 LINE L1 -2 6580 6533 2 1402 325 265 28 63 chr6 107161581 107161699 -42355338 - RLTR20B1 LTR ERVK 0 563 444 2 1402 243 0 0 0 chr6 107161725 107161752 -42355285 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 2 1402 7648 65 6 1 chr6 107161764 107162565 -42354472 + L1_Mus2 LINE L1 5543 6342 -224 2 1402 189 0 0 0 chr6 107162565 107162586 -42354451 + (CCA)n Simple_repeat Simple_repeat 1 21 0 2 1402 7648 63 6 1 chr6 107162586 107162803 -42354234 + L1_Mus2 LINE L1 6343 6564 -2 2 1402 629 163 0 20 chr6 107162844 107162994 -42354043 + GA-rich Low_complexity Low_complexity 4 150 0 2 1402 575 262 44 13 chr6 107162994 107163221 -42353816 - L1Md_F LINE L1 -5784 835 476 2 1402 189 74 0 0 chr6 107163738 107163765 -42353272 + (TTTTTG)n Simple_repeat Simple_repeat 1 27 0 2 1402 1190 47 0 7 chr6 107163767 107163916 -42353121 - B1_Mus1 SINE Alu 0 148 1 2 1402 21 36 0 0 chr6 107164114 107164142 -42352895 + AT_rich Low_complexity Low_complexity 1 28 0 2 1402 641 293 6 0 chr6 107164750 107164907 -42352130 + RSINE1 SINE B4 3 160 -5 2 1402 279 94 62 0 chr6 107165040 107165104 -42351933 + GA-rich Low_complexity Low_complexity 1 68 0 2 1402 1123 107 11 0 chr6 107165106 107165284 -42351753 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1402 932 238 43 14 chr6 107165438 107165647 -42351390 + B3 SINE B2 2 216 0 2 1402 295 368 0 10 chr6 107165650 107165746 -42351291 - Cheshire DNA MER1_type -2325 95 1 2 1402 245 333 93 42 chr6 107165760 107166070 -42350967 - L1MC LINE L1 -2111 5771 5446 2 1402 558 272 77 81 chr6 107166449 107166721 -42350316 - B4A SINE B4 -21 271 1 2 1402 478 294 26 47 chr6 107166818 107167011 -42350026 - B3A SINE B2 -7 191 3 2 1402 29 0 0 0 chr6 107167150 107167179 -42349858 + AT_rich Low_complexity Low_complexity 1 29 0 2 1402 220 113 94 0 chr6 107167519 107167572 -42349465 + (TATAA)n Simple_repeat Simple_repeat 2 59 0 2 1402 294 258 81 0 chr6 107167661 107167723 -42349314 - ID4 SINE ID -11 72 6 2 1402 1980 108 105 34 chr6 107168391 107168773 -42348264 + RLTR9E LTR ERVK 1 409 0 2 1402 227 316 30 20 chr6 107169296 107169396 -42347641 - MLT1C LTR MaLR -366 101 1 2 1402 1004 317 77 41 chr6 107169399 107170043 -42346994 + Tigger7 DNA MER2_type 2 673 -32 2 1402 251 229 0 20 chr6 107170168 107170217 -42346820 - ORR1D2 LTR MaLR -318 52 5 2 1402 772 257 93 45 chr6 107170646 107170915 -42346122 + MTE2a LTR MaLR 98 379 0 2 1402 1101 250 79 16 chr6 107171734 107172056 -42344981 - MTD LTR MaLR -14 405 67 2 1402 603 250 24 95 chr6 107173264 107173432 -42343605 + RSINE1 SINE B4 10 165 0 2 1402 221 427 0 0 chr6 107173607 107173703 -42343334 + MIR SINE MIR 40 135 -73 2 1402 373 309 71 0 chr6 107174607 107174733 -42342304 - MIRb SINE MIR -41 227 93 2 1402 482 340 149 32 chr6 107174873 107175217 -42341820 - MLT1C LTR MaLR -120 385 5 2 1402 21 0 0 0 chr6 107175582 107175603 -42341434 + AT_rich Low_complexity Low_complexity 1 21 0 2 1402 195 206 0 0 chr6 107176126 107176160 -42340877 - MIRc SINE MIR -116 152 119 2 1402 698 292 10 44 chr6 107176384 107176588 -42340449 + B3A SINE B2 3 199 -17 2 1402 212 0 36 0 chr6 107177107 107177135 -42339902 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1402 292 305 0 12 chr6 107177183 107177266 -42339771 + B4 SINE B4 5 86 -206 2 1402 872 269 0 44 chr6 107177274 107177500 -42339537 + B3 SINE B2 1 216 0 2 1402 360 289 83 37 chr6 107177524 107177632 -42339405 + B4 SINE B4 86 198 -94 2 1402 294 98 0 0 chr6 107177632 107177683 -42339354 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 2 1402 183 129 0 0 chr6 107177690 107177721 -42339316 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 2 1402 234 0 0 0 chr6 107177749 107177775 -42339262 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1402 7216 60 3 37 chr6 107178440 107179470 -42337567 - L1Md_F2 LINE L1 -1 6581 5587 2 1402 874 62 0 8 chr6 107179495 107179625 -42337412 + L1Md_F3 LINE L1 6455 6583 -1 2 1402 28 0 0 0 chr6 107179630 107179658 -42337379 + AT_rich Low_complexity Low_complexity 1 28 0 2 1402 511 132 36 0 chr6 107179722 107179805 -42337232 - PB1D10 SINE Alu -5 112 27 2 1402 2608 137 26 49 chr6 107179806 107180297 -42336740 + RLTR45 LTR ERVK 3 482 0 2 1402 366 232 0 0 chr6 107180475 107180544 -42336493 - ID2 SINE ID -14 69 1 2 1402 281 262 83 0 chr6 107181257 107181292 -42335745 - B4 SINE B4 0 292 252 2 1402 255 31 0 0 chr6 107181292 107181324 -42335713 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1402 281 262 83 0 chr6 107181324 107181372 -42335665 - B4 SINE B4 -41 251 203 2 1402 1271 60 0 0 chr6 107181372 107181540 -42335497 - L1Md_F2 LINE L1 -232 6350 6183 2 1402 2424 64 0 9 chr6 107181542 107181858 -42335179 + L1Md_F2 LINE L1 6258 6570 -12 2 1402 452 323 31 99 chr6 107181859 107182082 -42334955 - B4 SINE B4 -83 209 2 2 1402 215 320 13 0 chr6 107182944 107183022 -42334015 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1402 1362 125 71 0 chr6 107183349 107183573 -42333464 - RMER5 LTR ERV1 -10 524 285 2 1402 2591 237 37 25 chr6 107183748 107183822 -42333215 - Lx7 LINE L1 -266 7430 7357 2 1402 267 31 0 0 chr6 107183822 107183854 -42333183 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1402 2591 237 37 25 chr6 107183854 107184513 -42332524 - Lx7 LINE L1 -340 7356 6688 2 1402 967 154 97 97 chr6 107184509 107184797 -42332240 - L1_Mur3 LINE L1 -331 5549 5262 2 1402 8002 30 0 11 chr6 107184792 107185242 -42331795 - L1Md_F2 LINE L1 0 6582 6140 2 1402 2327 66 119 11 chr6 107185242 107185594 -42331443 - RLTR10 LTR ERVK 0 390 1 2 1402 8002 30 0 11 chr6 107185594 107186150 -42330887 - L1Md_F2 LINE L1 -443 6139 5587 2 1402 805 233 63 0 chr6 107186167 107186356 -42330681 - L1_Mur3 LINE L1 -612 5268 5068 2 1402 263 317 57 24 chr6 107186606 107186729 -42330308 + L2b LINE L2 3249 3375 0 2 1402 540 298 75 56 chr6 107187369 107187796 -42329241 - L1MC LINE L1 -1193 4953 4519 2 1402 757 293 104 62 chr6 107187832 107188170 -42328867 + MTEa LTR MaLR 28 379 0 2 1402 883 272 27 39 chr6 107188176 107188436 -42328601 + MTEa-int LTR MaLR 7 263 -1317 2 1402 750 0 0 0 chr6 107188439 107188524 -42328513 + L1_Mm LINE L1 5502 5586 -297 2 1402 8955 7 0 0 chr6 107188524 107189596 -42327441 + L1Md_A LINE L1 5587 6582 0 2 1402 1858 308 80 79 chr6 107189596 107190480 -42326557 + MTEa-int LTR MaLR 250 1134 -446 2 1402 251 219 0 40 chr6 107190781 107190857 -42326180 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1402 228 67 0 0 chr6 107191669 107191699 -42325338 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1402 244 245 192 19 chr6 107191744 107191848 -42325189 - RMER15 LTR ERVL -68 507 386 2 1402 184 351 131 38 chr6 107192257 107192417 -42324620 - MIR3 SINE MIR -28 180 6 2 1402 650 254 68 148 chr6 107193327 107193739 -42323298 + MTE2a LTR MaLR 1 379 0 2 1402 195 42 0 0 chr6 107194987 107195011 -42322026 + (CAAAT)n Simple_repeat Simple_repeat 2 25 0 2 1402 211 248 73 78 chr6 107195021 107195125 -42321912 - MIRm SINE MIR -128 148 44 2 1402 222 361 30 37 chr6 107195856 107196020 -42321017 + MER5B DNA MER1_type 16 178 0 2 1402 290 386 27 7 chr6 107196163 107196309 -42320728 + L2a LINE L2 2964 3112 -314 2 1402 3113 86 2 7 chr6 107196334 107196767 -42320270 - L1Md_F2 LINE L1 -2 6580 6150 2 1402 12635 83 2 5 chr6 107196767 107198347 -42318690 - L1_Mm LINE L1 -1591 4292 2715 2 1402 2980 71 137 2 chr6 107198347 107198772 -42318265 - RLTR45 LTR ERVK 0 482 1 2 1402 12635 83 2 5 chr6 107198772 107199033 -42318004 - L1_Mm LINE L1 -3169 2714 2456 2 1402 36279 48 6 1 chr6 107199027 107205164 -42311873 - L1Md_A LINE L1 0 6582 366 2 1402 281 333 0 64 chr6 107205265 107205374 -42311663 - B4 SINE B4 -6 286 185 2 1402 945 117 256 0 chr6 107206469 107206649 -42310388 + URR1A DNA MER1_type 1 226 0 2 1402 668 282 15 67 chr6 107207343 107207613 -42309424 + Lx8 LINE L1 6902 7157 -316 2 1402 300 111 0 0 chr6 107207625 107207670 -42309367 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1402 464 330 103 20 chr6 107207975 107208254 -42308783 - MLT1D LTR MaLR 0 505 302 2 1402 495 78 0 72 chr6 107209345 107209442 -42307595 - Lx LINE L1 -14 6640 6551 2 1402 809 159 0 0 chr6 107209442 107209580 -42307457 + L1_Mur2 LINE L1 5079 5216 -661 2 1402 431 168 15 0 chr6 107210140 107210277 -42306760 + (TCTA)n Simple_repeat Simple_repeat 4 142 0 2 1402 1066 307 79 31 chr6 107210293 107211151 -42305886 - ERVL-B4-int LTR ERVL -4780 977 31 2 1402 253 290 0 0 chr6 107211154 107211216 -42305821 + B4 SINE B4 4 65 -227 2 1402 2550 13 0 0 chr6 107211266 107211569 -42305468 - L1Md_F2 LINE L1 -635 5947 5645 2 1402 2181 44 0 15 chr6 107211569 107211843 -42305194 + L1Md_F2 LINE L1 6313 6582 0 2 1402 233 357 12 0 chr6 107211843 107211927 -42305110 + G-rich Low_complexity Low_complexity 3 87 0 2 1402 797 269 19 58 chr6 107211938 107212062 -42304975 + B4A SINE B4 88 207 -85 2 1402 2080 191 5 18 chr6 107212062 107212457 -42304580 + ORR1B1 LTR MaLR 5 394 0 2 1402 797 269 19 58 chr6 107212457 107212537 -42304500 + B4A SINE B4 208 284 -8 2 1402 867 234 67 122 chr6 107213874 107214186 -42302851 - ORR1E LTR MaLR -60 299 5 3 1402 194 257 133 13 chr6 107214238 107214313 -42302724 + MIRc SINE MIR 100 183 -85 3 1402 182 319 66 36 chr6 107214417 107214583 -42302454 + L2a LINE L2 3256 3426 0 3 1402 270 0 0 0 chr6 107214737 107214767 -42302270 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 3 1402 375 269 148 0 chr6 107214767 107214875 -42302162 - ID_B1 SINE B4 -8 216 93 3 1402 226 330 50 20 chr6 107215049 107215148 -42301889 + MamGypLTR1a LTR Gypsy 16 117 -667 3 1402 225 197 28 14 chr6 107215588 107215660 -42301377 + CT-rich Low_complexity Low_complexity 1 73 0 3 1402 989 301 134 24 chr6 107216498 107216576 -42300461 + Lx8 LINE L1 6777 6858 -615 3 1402 225 0 0 0 chr6 107216576 107216601 -42300436 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3 175 989 301 134 24 chr6 107216601 107217136 -42299901 + Lx8 LINE L1 6859 7457 -16 3 1403 519 280 217 5 chr6 107218047 107218452 -42298585 + L1MA5 LINE L1 5450 5940 -360 3 1403 621 309 16 42 chr6 107219595 107219784 -42297253 - B3A SINE B2 -7 191 8 3 1403 221 277 98 89 chr6 107219679 107219802 -42297235 - B4A SINE B4 -168 124 1 3 1403 967 339 28 7 chr6 107220057 107220339 -42296698 + B4A SINE B4 1 288 -4 3 1403 246 62 0 0 chr6 107220357 107220389 -42296648 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1403 761 237 43 10 chr6 107220481 107220690 -42296347 + B3 SINE B2 1 216 0 3 1403 23 33 0 0 chr6 107221285 107221315 -42295722 + AT_rich Low_complexity Low_complexity 1 30 0 3 1403 2537 70 15 0 chr6 107221398 107221739 -42295298 - L1_Mus3 LINE L1 -3 6635 6290 3 1403 2252 55 0 0 chr6 107221739 107222028 -42295009 + L1_Mus3 LINE L1 5957 6245 -393 3 1403 6809 29 0 0 chr6 107222137 107222933 -42294104 - L1Md_A LINE L1 0 6582 5787 3 1403 474 244 78 62 chr6 107222976 107223155 -42293882 - B3A SINE B2 -16 182 1 3 1403 254 274 59 0 chr6 107223266 107223368 -42293669 + L1MA9 LINE L1 5795 5902 -389 3 1403 249 197 66 0 chr6 107223521 107223582 -42293455 + L1MA9 LINE L1 6112 6176 -136 3 1403 414 0 0 0 chr6 107223625 107223671 -42293366 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1403 271 204 30 79 chr6 107223764 107223865 -42293172 + L1M2 LINE L1 5548 5643 -648 3 1403 311 149 14 0 chr6 107223911 107223985 -42293052 + GA-rich Low_complexity Low_complexity 2 76 0 3 1403 284 202 33 141 chr6 107224129 107224250 -42292787 - Lx9 LINE L1 -1649 5995 5888 3 1403 1708 76 0 0 chr6 107225467 107225690 -42291347 - L1_Mus1 LINE L1 0 6567 6345 3 1403 498 17 0 0 chr6 107225690 107225750 -42291287 + L1_Mus1 LINE L1 6302 6361 -206 3 1403 702 237 33 0 chr6 107225848 107226000 -42291037 + B3 SINE B2 9 165 -51 3 1403 207 0 0 0 chr6 107226000 107226023 -42291014 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1403 372 275 46 0 chr6 107226603 107226712 -42290325 + MER5A1 DNA MER1_type 1 114 -52 3 1403 954 341 86 20 chr6 107227142 107227651 -42289386 - MLT1E2 LTR MaLR -82 545 3 3 1403 216 0 0 0 chr6 107228085 107228109 -42288928 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 1403 1838 226 48 154 chr6 107228651 107229488 -42287549 - Lx7 LINE L1 -2 7694 6947 3 1403 3080 208 61 12 chr6 107229477 107230163 -42286874 + Lx7 LINE L1 6086 6805 -891 3 1403 364 104 0 38 chr6 107230163 107230243 -42286794 - RLTR10A LTR ERVK -95 316 240 3 1403 246 59 0 89 chr6 107230251 107230307 -42286730 + (TTTCC)n Simple_repeat Simple_repeat 3 53 0 3 1403 643 122 13 132 chr6 107230310 107230461 -42286576 - IAP-d-int LTR ERVK -6408 134 2 3 1403 1360 100 139 11 chr6 107230461 107230798 -42286239 - RLTR10A LTR ERVK 0 309 1 3 1403 797 145 62 0 chr6 107230799 107230944 -42286093 + Lx7 LINE L1 6804 6957 -739 3 1403 611 269 79 69 chr6 107231374 107231590 -42285447 + ID_B1 SINE B4 4 221 -3 3 1403 351 0 0 0 chr6 107231792 107231831 -42285206 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1403 531 343 18 6 chr6 107232237 107232407 -42284630 - B3A SINE B2 -8 190 19 3 1403 267 31 0 0 chr6 107232649 107232681 -42284356 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1403 429 358 73 13 chr6 107232687 107232837 -42284200 - B3A SINE B2 -35 163 5 3 1403 360 211 0 0 chr6 107233588 107233664 -42283373 - Lx8 LINE L1 -1001 6472 6397 3 1403 761 344 44 3 chr6 107233670 107234014 -42283023 + Lx8 LINE L1 6956 7313 -160 3 1403 216 0 0 0 chr6 107234120 107234144 -42282893 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1403 39083 13 1 6 chr6 107234248 107240443 -42276594 - L1Md_A LINE L1 0 6582 422 3 1403 579 294 97 18 chr6 107242041 107242590 -42274447 + L1_Rod LINE L1 5112 5775 -525 3 1403 212 0 36 0 chr6 107242590 107242618 -42274419 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1403 23 0 0 0 chr6 107242633 107242656 -42274381 + AT_rich Low_complexity Low_complexity 1 23 0 3 1403 221 262 62 47 chr6 107243541 107243605 -42273432 + MIRb SINE MIR 14 78 -190 3 1403 376 375 39 26 chr6 107243754 107243910 -42273127 + RSINE1 SINE B4 8 165 0 3 1403 39106 11 0 6 chr6 107244509 107251128 -42265909 - L1Md_A LINE L1 0 6582 7 3 1403 360 267 57 0 chr6 107253250 107253355 -42263682 - PB1D9 SINE Alu -9 111 1 3 1403 1093 292 45 10 chr6 107255762 107256070 -42260967 + MER57E1 LTR ERV1 49 367 -5 3 1403 457 314 7 35 chr6 107256171 107256316 -42260721 + B1F1 SINE Alu 1 141 -8 3 1403 2120 274 107 30 chr6 107256615 107257389 -42259648 - Lx6 LINE L1 0 7460 6627 3 1403 307 356 59 56 chr6 107257395 107257477 -42259560 + RMER17C LTR ERVK 3 79 -331 3 1403 870 90 0 0 chr6 107257477 107257611 -42259426 + (TC)n Simple_repeat Simple_repeat 1 134 0 3 1403 307 356 59 56 chr6 107257611 107257852 -42259185 + RMER17C LTR ERVK 80 327 -83 3 1403 539 245 33 20 chr6 107257890 107258040 -42258997 - Lx5 LINE L1 -648 6402 6251 3 1403 1974 170 31 5 chr6 107258034 107258425 -42258612 - Lx5 LINE L1 -1040 6010 5610 3 1403 303 290 107 45 chr6 107258435 107258659 -42258378 - L1M4 LINE L1 -864 5282 5045 3 1403 330 344 19 22 chr6 107258935 107259115 -42257922 + MIR SINE MIR 78 260 -8 3 1403 22 0 0 0 chr6 107261281 107261303 -42255734 + AT_rich Low_complexity Low_complexity 1 22 0 3 1403 351 0 0 0 chr6 107261963 107262002 -42255035 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1403 378 0 0 0 chr6 107262002 107262043 -42254994 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 1403 216 64 0 96 chr6 107262301 107262353 -42254684 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1403 183 255 58 19 chr6 107263186 107263238 -42253799 + L3 LINE CR1 1632 1685 -2804 3 1403 845 307 28 5 chr6 107264417 107264633 -42252404 + B4 SINE B4 50 270 -22 3 1403 477 34 0 0 chr6 107264634 107264693 -42252344 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1403 318 370 39 16 chr6 107265006 107265135 -42251902 + MamRep38 DNA hAT 18 149 -146 3 1403 288 0 0 0 chr6 107265333 107265365 -42251672 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3 1403 583 241 160 6 chr6 107265365 107265540 -42251497 - B3 SINE B2 -14 202 1 3 1403 22 0 0 0 chr6 107265552 107265574 -42251463 + AT_rich Low_complexity Low_complexity 1 22 0 3 1403 289 388 0 8 chr6 107265793 107265923 -42251114 - MLT1H LTR MaLR -376 173 45 3 1403 392 373 97 95 chr6 107265988 107266228 -42250809 + MLT1K LTR MaLR 72 320 -275 3 1403 994 80 72 0 chr6 107266228 107266366 -42250671 + B1_Mus1 SINE Alu 1 148 0 3 1403 392 373 97 95 chr6 107266366 107266611 -42250426 + MLT1K LTR MaLR 321 558 -37 3 1403 9016 71 9 2 chr6 107267186 107268517 -42248520 - L1Md_F2 LINE L1 -1 6581 5235 3 1403 261 0 0 0 chr6 107268517 107268546 -42248491 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1403 531 0 0 0 chr6 107268546 107268604 -42248433 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 1403 9016 69 15 2 chr6 107268604 107269223 -42247814 - L1Md_F2 LINE L1 -649 5234 4616 3 1403 504 364 17 55 chr6 107269303 107269541 -42247496 - B4A SINE B4 0 292 64 3 1403 25 31 0 0 chr6 107271587 107271619 -42245418 + AT_rich Low_complexity Low_complexity 1 32 0 3 1403 251 321 25 13 chr6 107271641 107271720 -42245317 + ID4 SINE ID 2 81 -2 3 1403 1343 199 102 39 chr6 107271846 107272018 -42245019 - ORR1C2 LTR MaLR 0 384 177 3 1403 279 0 0 0 chr6 107272018 107272049 -42244988 + (CAG)n Simple_repeat Simple_repeat 2 32 0 3 1403 1343 199 102 39 chr6 107272049 107272237 -42244800 - ORR1C2 LTR MaLR -208 176 2 3 1403 234 0 0 0 chr6 107272488 107272514 -42244523 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1403 181 135 19 19 chr6 107272701 107272754 -42244283 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 3 1403 738 207 21 14 chr6 107272949 107273091 -42243946 + B1_Mur1 SINE Alu 1 143 -6 3 1403 313 319 76 87 chr6 107273091 107273113 -42243924 + B4A SINE B4 117 247 -45 3 1403 1055 287 61 17 chr6 107273340 107273865 -42243172 + L1MB5 LINE L1 5560 6107 -67 3 1403 541 90 22 0 chr6 107277241 107277330 -42239707 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 3 1403 1146 93 0 34 chr6 107277338 107277516 -42239521 - L1_Mus2 LINE L1 -1 6565 6394 3 1403 2326 138 0 0 chr6 107277516 107277885 -42239152 + L1_Mm LINE L1 5513 5881 -2 3 1403 578 14 14 0 chr6 107277888 107277959 -42239078 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 3 1403 373 316 43 29 chr6 107278103 107278243 -42238794 + MIRb SINE MIR 111 252 -16 3 1403 1508 209 6 6 chr6 107279258 107279586 -42237451 - Lx2B LINE L1 -473 6527 6200 3 1403 381 207 35 0 chr6 107279568 107279655 -42237382 + Lx2B LINE L1 6531 6620 -380 3 1403 36608 5 1 0 chr6 107279655 107285021 -42232016 + L1Md_A LINE L1 214 5586 -297 3 1403 9022 4 0 0 chr6 107285021 107286017 -42231020 + L1Md_A LINE L1 5587 6582 0 3 1403 1645 199 39 16 chr6 107286019 107286401 -42230636 + Lx2B LINE L1 6610 7000 0 3 1403 3664 47 5 17 chr6 107288058 107288627 -42228410 - L1_Mus2 LINE L1 -637 5929 5367 3 1403 4499 72 32 2 chr6 107288627 107289223 -42227814 + L1_Mus2 LINE L1 5952 6565 -1 3 1403 23 0 0 0 chr6 107289297 107289320 -42227717 + AT_rich Low_complexity Low_complexity 1 23 0 3 1403 25 0 0 0 chr6 107289525 107289550 -42227487 + AT_rich Low_complexity Low_complexity 1 25 0 3 1403 279 79 0 0 chr6 107289650 107289688 -42227349 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 1403 26 50 0 0 chr6 107289712 107289752 -42227285 + AT_rich Low_complexity Low_complexity 1 40 0 3 1403 237 250 0 0 chr6 107290297 107290349 -42226688 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 3 1403 205 171 0 0 chr6 107290349 107290384 -42226653 + GA-rich Low_complexity Low_complexity 2 36 0 3 1403 252 0 0 0 chr6 107290395 107290423 -42226614 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 3 1403 927 328 19 0 chr6 107290424 107290683 -42226354 - B4A SINE B4 -27 265 2 4 1403 600 250 102 25 chr6 107290973 107291170 -42225867 - B3 SINE B2 -4 212 1 4 1403 194 328 167 16 chr6 107292062 107292248 -42224789 + MIR SINE MIR 49 262 0 4 1403 430 291 26 92 chr6 107292604 107292933 -42224104 - ORR1D2 LTR MaLR 0 370 77 4 1403 423 303 49 14 chr6 107293469 107293613 -42223424 + MER5A DNA MER1_type 19 167 -22 4 1403 1686 181 36 21 chr6 107294817 107295196 -42221841 + Lx LINE L1 6226 6650 -4 4 1403 273 89 0 0 chr6 107295317 107295362 -42221675 + (TTTTG)n Simple_repeat Simple_repeat 5 49 0 4 1403 268 297 16 0 chr6 107295654 107295718 -42221319 + tRNA-Ala-GCY_ tRNA tRNA 4 68 -7 4 1403 205 311 65 32 chr6 107296023 107296116 -42220921 + MIRb SINE MIR 60 155 -113 4 1403 204 296 70 0 chr6 107296537 107296608 -42220429 - MIRb SINE MIR -159 109 34 4 1403 318 319 88 15 chr6 107297169 107297306 -42219731 + LTR16C LTR ERVL 300 446 -43 4 1403 489 104 0 0 chr6 107297326 107297403 -42219634 + (GGA)n Simple_repeat Simple_repeat 3 79 0 4 1403 246 302 175 8 chr6 107297434 107297554 -42219483 + MLT1E2 LTR MaLR 5 144 -510 4 1403 543 311 130 35 chr6 107297645 107297973 -42219064 + MLT1E2 LTR MaLR 271 613 -11 4 1403 313 250 0 0 chr6 107298207 107298267 -42218770 - B4A SINE B4 -4 288 229 4 1403 3484 217 73 84 chr6 107298287 107299320 -42217717 - RMER1B Other Other 0 1066 46 4 1403 718 318 46 23 chr6 107299586 107299805 -42217232 - B4A SINE B4 -68 224 1 4 1403 384 309 97 64 chr6 107300707 107301036 -42216001 + L2 LINE L2 2741 3080 -339 4 1403 457 30 0 29 chr6 107301240 107301309 -42215728 + (TGAA)n Simple_repeat Simple_repeat 1 67 0 4 1403 480 18 0 0 chr6 107302432 107302489 -42214548 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1403 213 243 0 0 chr6 107302721 107302758 -42214279 + B1F SINE Alu 1 37 -112 4 1403 212 322 0 61 chr6 107302758 107302787 -42214250 + B4A SINE B4 86 147 -145 4 1403 285 353 25 25 chr6 107302855 107302974 -42214063 + MIR SINE MIR 11 129 -133 4 1403 380 273 45 0 chr6 107303782 107303892 -42213145 + ID_B1 SINE B4 102 216 -8 4 1403 272 237 0 17 chr6 107304155 107304215 -42212822 - RMER15 LTR ERVL -85 490 432 4 1403 1478 239 206 9 chr6 107304761 107305213 -42211824 - RMER15 LTR ERVL -2 573 33 4 1403 984 165 81 20 chr6 107305232 107305430 -42211607 - URR1A DNA MER1_type 0 226 17 4 1403 314 233 0 0 chr6 107305521 107305581 -42211456 - RMER15 LTR ERVL -515 60 1 4 1403 244 369 109 22 chr6 107306534 107306764 -42210273 + MIRb SINE MIR 18 267 -1 4 1403 195 318 0 0 chr6 107307198 107307261 -42209776 + L2c LINE L2 3267 3329 -58 4 1403 563 98 11 0 chr6 107307629 107307721 -42209316 + (CATA)n Simple_repeat Simple_repeat 2 94 0 4 1403 377 234 207 10 chr6 107307950 107308153 -42208884 + L1MA9 LINE L1 6044 6286 -26 4 1403 231 413 50 19 chr6 107308181 107308440 -42208597 - MLT1K LTR MaLR -49 546 280 4 1403 221 0 35 0 chr6 107309261 107309290 -42207747 + (GA)n Simple_repeat Simple_repeat 1 30 0 4 1403 536 259 69 0 chr6 107309878 107310009 -42207028 + B1_Mur1 SINE Alu 4 143 -6 4 1403 836 296 92 10 chr6 107310919 107311213 -42205824 - MTEb LTR MaLR 0 379 62 4 1403 214 318 46 18 chr6 107311505 107311614 -42205423 + MIRb SINE MIR 157 268 0 4 1403 405 335 33 70 chr6 107311753 107311994 -42205043 - MIR SINE MIR -10 252 21 4 1403 1059 282 69 12 chr6 107312635 107312969 -42204068 - MLT1B LTR MaLR 0 390 38 4 1403 4976 91 14 3 chr6 107312971 107313663 -42203374 + L1_Mus1 LINE L1 5865 6564 -3 4 1403 283 278 0 0 chr6 107313716 107313788 -42203249 - ID4 SINE ID -9 74 3 4 1403 1086 89 7 0 chr6 107314591 107314737 -42202300 + B1_Mus1 SINE Alu 1 147 -1 4 1403 282 299 179 0 chr6 107315050 107315167 -42201870 + MER5A1 DNA MER1_type 26 163 -3 4 1403 417 54 0 0 chr6 107315350 107315406 -42201631 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1403 329 345 34 0 chr6 107315545 107315664 -42201373 - MER20 DNA MER1_type -7 212 90 4 1403 195 129 0 0 chr6 107315686 107315717 -42201320 + (ATG)n Simple_repeat Simple_repeat 1 31 0 4 1403 1269 72 0 6 chr6 107315817 107315984 -42201053 - B2_Mm2 SINE B2 -28 167 2 4 1403 345 24 0 0 chr6 107316097 107316139 -42200898 + (TTG)n Simple_repeat Simple_repeat 2 43 0 4 1403 25 0 0 0 chr6 107316386 107316411 -42200626 + AT_rich Low_complexity Low_complexity 1 25 0 4 1403 333 277 67 98 chr6 107316527 107316691 -42200346 + L1M5 LINE L1 4680 4838 -1308 4 1403 418 306 136 84 chr6 107317123 107317469 -42199568 - MLT1A0 LTR MaLR -1 364 1 4 1403 1822 198 27 3 chr6 107317901 107318276 -42198761 - ORR1C2 LTR MaLR 0 384 1 4 1403 1096 320 96 9 chr6 107319168 107319701 -42197336 + Lx8 LINE L1 6525 7103 -370 4 1403 183 310 81 57 chr6 107319943 107320066 -42196971 + MIRc SINE MIR 28 153 -115 4 1403 925 248 0 43 chr6 107321737 107321948 -42195089 - B3 SINE B2 -13 203 2 4 1403 180 194 56 0 chr6 107321975 107322011 -42195026 - MIRc SINE MIR -118 150 113 4 1403 209 232 14 0 chr6 107322767 107322836 -42194201 + CT-rich Low_complexity Low_complexity 4 73 0 4 1403 397 152 0 35 chr6 107322839 107322955 -42194082 + (TCTCTG)n Simple_repeat Simple_repeat 1 112 0 4 1403 320 301 9 64 chr6 107323061 107323171 -42193866 + MIRb SINE MIR 46 149 -119 4 1403 1182 48 0 7 chr6 107323555 107323701 -42193336 + B1_Mm SINE Alu 2 146 -1 4 1403 394 318 32 44 chr6 107323731 107323889 -42193148 - MLT1C LTR MaLR -53 414 259 4 1403 243 228 172 11 chr6 107323896 107323989 -42193048 + MLT1A1 LTR MaLR 7 114 -294 4 1403 895 258 97 35 chr6 107324255 107324628 -42192409 - Lx8 LINE L1 -7 7466 7071 4 1403 234 311 127 38 chr6 107324676 107324833 -42192204 + RLTR20B3 LTR ERVK 79 249 -328 4 1403 236 256 87 135 chr6 107324836 107325044 -42191993 + RLTR12A LTR ERVK 371 568 0 4 1403 236 273 45 0 chr6 107325141 107325207 -42191830 - Lx8 LINE L1 -587 6886 6818 4 1403 194 239 26 66 chr6 107325271 107325347 -42191690 - L2c LINE L2 -22 3365 3293 4 1403 1565 227 93 26 chr6 107326350 107326735 -42190302 - MTD LTR MaLR -8 411 1 4 1403 356 333 19 29 chr6 107327138 107327243 -42189794 + PB1D10 SINE Alu 1 104 -13 4 1403 953 104 0 7 chr6 107327244 107327380 -42189657 + B1_Mus2 SINE Alu 3 137 -10 4 1403 800 111 0 8 chr6 107327380 107327507 -42189530 + (CAAAA)n Simple_repeat Simple_repeat 2 127 0 4 1403 2352 270 12 19 chr6 107328281 107328852 -42188185 + MER82 DNA MER2_type 80 646 -7 4 1403 229 260 171 9 chr6 107328883 107328988 -42188049 + L2a LINE L2 3304 3425 -1 4 1403 370 356 85 36 chr6 107329557 107329805 -42187232 - RMER15 LTR ERVL -13 562 303 4 1403 308 253 25 0 chr6 107330193 107330272 -42186765 + GA-rich Low_complexity Low_complexity 2 82 0 4 1403 468 377 47 13 chr6 107330523 107330757 -42186280 - LTR16C LTR ERVL -109 380 139 4 1403 188 0 74 0 chr6 107331828 107331855 -42185182 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1403 219 296 44 22 chr6 107332019 107332109 -42184928 + L2a LINE L2 3331 3422 -4 4 1403 351 0 0 0 chr6 107332220 107332259 -42184778 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1403 355 335 398 34 chr6 107332429 107332718 -42184319 - MER21B LTR ERV1 -351 512 119 4 1403 260 281 75 43 chr6 107332785 107332864 -42184173 + MLT1A0 LTR MaLR 1 82 -283 4 1403 227 292 41 14 chr6 107332864 107332937 -42184100 + B4 SINE B4 1 75 -217 4 1403 230 318 0 33 chr6 107332927 107333018 -42184019 + MLT1A0 LTR MaLR 321 408 0 4 1403 277 84 13 53 chr6 107333226 107333301 -42183736 + T-rich Low_complexity Low_complexity 2 73 0 4 1403 351 0 0 0 chr6 107334551 107334590 -42182447 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1403 270 0 0 0 chr6 107334639 107334669 -42182368 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1403 255 31 0 0 chr6 107335396 107335428 -42181609 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 1403 23 0 0 0 chr6 107335639 107335662 -42181375 + AT_rich Low_complexity Low_complexity 1 23 0 4 1403 450 263 0 81 chr6 107335682 107335806 -42181231 + PB1D10 SINE Alu 1 114 -3 4 1403 526 239 9 9 chr6 107336842 107336956 -42180081 + PB1D9 SINE Alu 4 117 -3 4 1403 21 36 0 0 chr6 107337186 107337214 -42179823 + AT_rich Low_complexity Low_complexity 1 28 0 4 1403 698 224 107 40 chr6 107337219 107337396 -42179641 + ORR1D1 LTR MaLR 1 189 -185 4 1403 202 26 105 0 chr6 107337396 107337434 -42179603 + (TCTCTG)n Simple_repeat Simple_repeat 6 47 0 4 1403 510 93 0 0 chr6 107337437 107337523 -42179514 + (TC)n Simple_repeat Simple_repeat 1 86 0 4 1403 946 215 14 47 chr6 107337523 107337738 -42179299 + ORR1D1 LTR MaLR 166 373 -1 4 1403 447 19 0 0 chr6 107337738 107337790 -42179247 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1403 305 62 21 0 chr6 107337790 107337838 -42179199 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 4 1403 569 242 24 0 chr6 107338940 107339064 -42177973 + B3 SINE B2 4 130 -86 4 1403 186 43 0 0 chr6 107339492 107339515 -42177522 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1403 553 59 23 12 chr6 107339555 107339641 -42177396 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 4 1403 487 264 172 39 chr6 107339735 107340025 -42177012 - MLT2B1 LTR ERVL -48 366 34 4 1403 1592 146 122 55 chr6 107340025 107340233 -42176804 + RMER17C LTR ERVK 1 215 -195 4 1403 432 0 0 0 chr6 107340233 107340281 -42176756 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 1403 1592 146 122 55 chr6 107340281 107340321 -42176716 + RMER17C LTR ERVK 216 262 -148 4 1403 182 33 0 62 chr6 107340321 107340353 -42176684 + (CTATA)n Simple_repeat Simple_repeat 1 30 0 4 1403 1592 146 122 55 chr6 107340353 107340487 -42176550 + RMER17C LTR ERVK 263 409 -1 4 1403 487 258 187 27 chr6 107340487 107340514 -42176523 - MLT2B1 LTR ERVL -487 33 11 4 1403 2994 47 0 0 chr6 107340514 107340873 -42176164 - L1Md_F2 LINE L1 -141 5742 5384 4 1403 6702 45 0 10 chr6 107340873 107341703 -42175334 + L1Md_F2 LINE L1 5759 6580 -2 4 1403 846 306 42 7 chr6 107342423 107342810 -42174227 - L1MA4 LINE L1 -415 5888 5482 4 1403 640 257 7 0 chr6 107342825 107342961 -42174076 - B1_Mur1 SINE Alu -1 148 12 5 1403 346 304 88 17 chr6 107342996 107343307 -42173730 + L1_Mur3 LINE L1 4655 5028 -1115 5 1403 272 289 40 40 chr6 107343312 107343413 -42173624 - MLT1H LTR MaLR -388 161 61 5 1403 1302 282 60 11 chr6 107343436 107343787 -42173250 + MTEa LTR MaLR 9 376 -3 5 1403 387 0 0 0 chr6 107344297 107344340 -42172697 + (TAA)n Simple_repeat Simple_repeat 2 44 0 5 1403 893 252 15 0 chr6 107346000 107346206 -42170831 - B3 SINE B2 -7 209 1 5 1403 754 308 0 39 chr6 107346232 107346438 -42170599 - B3A SINE B2 0 198 1 5 1403 513 300 8 0 chr6 107346502 107346632 -42170405 - B1F1 SINE Alu -1 148 18 5 1403 408 333 7 40 chr6 107346632 107346652 -42170385 - ID_B1 SINE B4 -2 222 78 5 1403 519 303 167 8 chr6 107346945 107347208 -42169829 - MLT1E2 LTR MaLR 0 627 323 5 1403 302 322 69 109 chr6 107347193 107347395 -42169642 - MLT1E2 LTR MaLR -304 201 8 5 1404 546 54 0 0 chr6 107348054 107348128 -42168909 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1404 220 333 28 28 chr6 107348470 107348541 -42168496 + RSINE1 SINE B4 6 76 -89 5 1404 23 0 0 0 chr6 107349073 107349096 -42167941 + AT_rich Low_complexity Low_complexity 1 23 0 5 1404 262 380 42 32 chr6 107350294 107350484 -42166553 + Charlie8 DNA MER1_type 72 263 -2165 5 1404 272 206 94 16 chr6 107350602 107350666 -42166371 - ID4_ SINE ID -13 70 2 5 1404 220 342 26 40 chr6 107351090 107351166 -42165871 + ID4 SINE ID 6 80 -3 5 1404 4260 58 5 14 chr6 107351261 107351817 -42165220 - L1Md_F3 LINE L1 0 6584 6034 5 1404 1654 265 78 35 chr6 107352933 107353551 -42163486 - Lx9 LINE L1 -961 6683 5938 5 1404 790 280 23 0 chr6 107353551 107353765 -42163272 + Lx9 LINE L1 6690 6908 -736 5 1404 1964 186 115 91 chr6 107353768 107354384 -42162653 - RMER6C LTR ERVK 0 690 60 5 1404 20335 80 26 6 chr6 107354384 107357925 -42159112 + L1_Mus4 LINE L1 3028 6636 0 5 1404 23 0 0 0 chr6 107358740 107358763 -42158274 + AT_rich Low_complexity Low_complexity 1 23 0 5 1404 24 67 0 0 chr6 107359281 107359326 -42157711 + AT_rich Low_complexity Low_complexity 1 45 0 5 1404 631 264 133 17 chr6 107359431 107359849 -42157188 + L1M4 LINE L1 5232 5718 -456 5 1404 460 277 9 0 chr6 107359914 107360026 -42157011 + Tigger5 DNA MER2_type 2294 2406 0 5 1404 861 311 52 43 chr6 107360256 107360597 -42156440 - ORR1E LTR MaLR -5 374 1 5 1404 372 94 0 0 chr6 107361481 107361534 -42155503 + (TCTCCC)n Simple_repeat Simple_repeat 3 55 0 5 1404 387 127 0 0 chr6 107362319 107362382 -42154655 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1404 243 165 43 21 chr6 107362382 107362475 -42154562 - Lx9 LINE L1 -131 7513 7419 5 1404 372 178 0 0 chr6 107362481 107362554 -42154483 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 1404 327 330 59 11 chr6 107362574 107362761 -42154276 - MER112 DNA MER1_type -64 197 2 5 1404 302 265 93 93 chr6 107364673 107364835 -42152202 + B4A SINE B4 6 167 -125 5 1404 774 28 0 27 chr6 107365031 107365143 -42151894 + L1Md_F3 LINE L1 6462 6570 -14 5 1404 196 262 202 0 chr6 107365795 107365879 -42151158 - L3 LINE CR1 -219 4270 4170 5 1404 196 311 0 47 chr6 107365920 107365984 -42151053 + L2a LINE L2 3326 3386 -40 5 1404 290 222 32 0 chr6 107366007 107366070 -42150967 - B4 SINE B4 -227 65 1 5 1404 662 233 23 0 chr6 107367639 107367772 -42149265 + B1_Mur1 SINE Alu 12 147 -2 5 1404 781 193 15 0 chr6 107368571 107368706 -42148331 + B1_Mur1 SINE Alu 1 137 -12 5 1404 201 171 0 0 chr6 107368708 107368743 -42148294 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 5 1404 289 341 11 0 chr6 107369539 107369630 -42147407 - LTR16C LTR ERVL -8 481 390 5 1404 219 125 0 0 chr6 107370731 107370771 -42146266 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1404 230 200 0 26 chr6 107370878 107370955 -42146082 + (CAAA)n Simple_repeat Simple_repeat 1 75 0 5 1404 238 196 0 0 chr6 107370879 107370935 -42146102 + A-rich Low_complexity Low_complexity 1 56 0 5 1404 320 323 160 24 chr6 107370975 107371181 -42145856 - Lx8 LINE L1 -192 7281 7048 5 1404 245 75 25 0 chr6 107371708 107371748 -42145289 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 5 1404 23 0 0 0 chr6 107372009 107372032 -42145005 + AT_rich Low_complexity Low_complexity 1 23 0 5 1404 2323 268 28 134 chr6 107373325 107374144 -42142893 + Lx5 LINE L1 6301 7032 -18 5 1404 553 78 26 0 chr6 107374171 107374248 -42142789 - Lx3B LINE L1 -552 6421 6343 5 1404 200 357 25 74 chr6 107374705 107374826 -42142211 + L2c LINE L2 3262 3376 -11 5 1404 384 257 35 62 chr6 107374929 107375074 -42141963 - B1F2 SINE Alu -4 145 5 5 1404 384 277 118 49 chr6 107375086 107375230 -42141807 - ID_B1 SINE B4 -6 218 65 5 1404 257 290 0 46 chr6 107375935 107376000 -42141037 - tRNA-Ala-GCY_ tRNA tRNA 0 75 14 5 1404 279 302 3 0 chr6 107375943 107376013 -42141024 - ID4 SINE ID -7 76 6 5 1404 255 239 119 42 chr6 107376081 107376199 -42140838 - MER97c DNA MER1_type? -931 159 33 5 1404 447 19 0 0 chr6 107376495 107376547 -42140490 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1404 434 267 73 37 chr6 107378259 107378395 -42138642 + B3A SINE B2 2 142 -56 5 1404 374 0 22 0 chr6 107378399 107378445 -42138592 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1404 369 75 0 0 chr6 107378445 107378497 -42138540 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1404 230 312 120 26 chr6 107378524 107378715 -42138322 + L1MA6 LINE L1 5817 6025 -275 5 1404 3491 118 12 99 chr6 107379193 107379970 -42137067 + L1_Mur3 LINE L1 3004 3712 -2168 5 1404 896 218 0 41 chr6 107380572 107380768 -42136269 + B3 SINE B2 29 216 0 5 1404 216 246 16 16 chr6 107381375 107381423 -42135614 + polypurine Low_complexity Low_complexity 6 53 0 5 1404 1422 50 0 0 chr6 107381423 107381602 -42135435 + (GA)n Simple_repeat Simple_repeat 1 179 0 5 1404 216 246 16 16 chr6 107381602 107381615 -42135422 + polypurine Low_complexity Low_complexity 54 66 0 5 1404 23 0 0 0 chr6 107382421 107382444 -42134593 + AT_rich Low_complexity Low_complexity 1 23 0 5 1404 332 340 55 28 chr6 107383811 107384034 -42133003 + Charlie2b DNA MER1_type 3 236 -2546 5 1404 474 325 197 25 chr6 107384064 107384624 -42132413 + Charlie2b DNA MER1_type 1827 2483 -299 5 1404 360 0 0 0 chr6 107385303 107385343 -42131694 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1404 1425 34 0 0 chr6 107385617 107385792 -42131245 + (TAGG)n Simple_repeat Simple_repeat 1 175 0 5 1404 1036 238 136 56 chr6 107386746 107387085 -42129952 - ORR1D2 LTR MaLR -4 366 1 5 1404 217 321 35 60 chr6 107387462 107387578 -42129459 - MIRb SINE MIR -99 177 65 5 1404 425 367 189 17 chr6 107387855 107388263 -42128774 - MLT1J LTR MaLR -31 481 4 5 1404 386 367 33 13 chr6 107388569 107388721 -42128316 - RSINE1 SINE B4 -9 156 2 5 1404 25 0 0 0 chr6 107388773 107388798 -42128239 + AT_rich Low_complexity Low_complexity 1 25 0 5 1404 231 88 0 0 chr6 107389091 107389125 -42127912 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1404 306 274 84 17 chr6 107389287 107389406 -42127631 + MER103 DNA DNA 1 127 -39 5 1404 382 337 161 36 chr6 107389578 107389852 -42127185 - MLT1A0 LTR MaLR 0 365 58 5 1404 251 260 13 13 chr6 107389912 107389990 -42127047 + GA-rich Low_complexity Low_complexity 4 81 0 5 1404 241 381 154 8 chr6 107390210 107390469 -42126568 + L2a LINE L2 3101 3397 -29 5 1404 330 299 117 86 chr6 107390999 107391383 -42125654 + RMER10A LTR ERVL 18 413 -29 5 1404 678 321 109 33 chr6 107391420 107391816 -42125221 + MLT1C LTR MaLR 28 453 -14 5 1404 285 291 57 41 chr6 107392451 107392573 -42124464 + MLT1A0 LTR MaLR 6 129 -236 5 1404 518 201 201 52 chr6 107392641 107392835 -42124202 + RMER5 LTR ERV1 51 273 -261 5 1404 2033 115 14 71 chr6 107392977 107393206 -42123831 - RMER17C LTR ERVK -12 398 180 5 1404 822 116 0 0 chr6 107393206 107393335 -42123702 + (GGA)n Simple_repeat Simple_repeat 2 130 0 5 1404 2033 115 14 71 chr6 107393335 107393527 -42123510 - RMER17C LTR ERVK -231 179 1 5 1404 322 231 0 0 chr6 107393530 107393595 -42123442 + MIRb SINE MIR 111 175 -93 5 1404 450 359 125 16 chr6 107394252 107394629 -42122408 - Tigger13a DNA MER2_type -314 457 40 5 1404 945 253 156 9 chr6 107395865 107396192 -42120845 + MTE2a LTR MaLR 4 378 -1 5 1404 405 0 0 0 chr6 107397673 107397718 -42119319 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1404 459 0 0 0 chr6 107397718 107397768 -42119269 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1404 401 260 39 28 chr6 107397861 107398043 -42118994 + L1_Rod LINE L1 70 253 -6919 5 1404 899 279 19 19 chr6 107398062 107398373 -42118664 + L1_Rod LINE L1 99 409 -6763 5 1404 9666 216 74 50 chr6 107398411 107398809 -42118228 + Lx9 LINE L1 2444 2847 -3000 5 1404 1136 66 0 0 chr6 107398809 107398946 -42118091 + B1_Mus1 SINE Alu 1 137 -11 5 1404 297 75 0 0 chr6 107398953 107398993 -42118044 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5 1404 9666 219 73 50 chr6 107398993 107402191 -42114846 + Lx9 LINE L1 2848 6248 -1396 5 1404 720 184 137 0 chr6 107402249 107402417 -42114620 + Lx9 LINE L1 6375 6565 -1079 5 1404 2176 215 17 54 chr6 107402422 107402996 -42114041 + RLTR31_Mur LTR ERVK 1 553 0 5 1404 2094 174 17 8 chr6 107403101 107403461 -42113576 + MTC LTR MaLR 59 421 0 5 1404 1030 238 48 10 chr6 107403468 107403757 -42113280 + Lx9 LINE L1 7140 7439 -205 5 1404 315 0 0 0 chr6 107403813 107403848 -42113189 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1404 333 273 0 0 chr6 107403850 107403949 -42113088 + Lx9 LINE L1 7532 7630 -14 5 1404 3016 71 10 2 chr6 107403949 107404346 -42112691 - MTB LTR MaLR 0 400 1 5 1404 629 294 64 21 chr6 107405408 107405596 -42111441 + B4A SINE B4 2 197 -95 5 1404 228 135 0 0 chr6 107405610 107405647 -42111390 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1404 1030 274 166 35 chr6 107405864 107406268 -42110769 - MLT1C LTR MaLR 0 467 11 5 1404 349 269 73 18 chr6 107407052 107407162 -42109875 - MLT1D LTR MaLR 0 505 416 5 1404 235 281 112 20 chr6 107407585 107407683 -42109354 - LTR82A LTR ERVL -237 635 529 6 1404 948 324 32 12 chr6 107407728 107408137 -42108900 + Lx8 LINE L1 6918 7334 -139 6 1404 563 319 81 6 chr6 107408478 107408639 -42108398 + B3A SINE B2 3 175 -23 6 1404 486 0 0 0 chr6 107408661 107408715 -42108322 + (TAAAA)n Simple_repeat Simple_repeat 3 56 0 6 1404 23 0 0 0 chr6 107408770 107408793 -42108244 + AT_rich Low_complexity Low_complexity 1 23 0 6 1404 590 279 29 19 chr6 107408815 107409020 -42108017 - B3 SINE B2 -6 210 4 6 1404 552 15 0 0 chr6 107409569 107409634 -42107403 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1404 4178 114 38 0 chr6 107410500 107411138 -42105899 + RLTR13D4 LTR ERVK 1 649 -384 6 1404 2483 90 31 56 chr6 107411291 107411681 -42105356 + RLTR13D4 LTR ERVK 654 1033 0 6 1404 263 185 245 21 chr6 107411806 107411900 -42105137 + MLT2B2 LTR ERVL 58 172 -343 6 1404 426 342 80 39 chr6 107411956 107412195 -42104842 + MLT2B2 LTR ERVL 281 528 -34 6 1404 830 83 8 0 chr6 107412835 107412955 -42104082 + (TCTCCC)n Simple_repeat Simple_repeat 6 126 0 6 1404 230 325 65 58 chr6 107413445 107413594 -42103443 - MIRb SINE MIR -43 165 19 6 1404 406 277 75 25 chr6 107414760 107414919 -42102118 + MIRb SINE MIR 2 168 -100 6 1404 310 350 104 32 chr6 107415055 107415276 -42101761 - LTR16C LTR ERVL -31 458 222 6 1404 231 352 0 0 chr6 107415563 107415634 -42101403 + L2b LINE L2 3303 3373 -2 6 1404 2107 294 89 35 chr6 107416892 107417808 -42099229 + Lx8 LINE L1 6356 7321 -152 6 1404 197 218 17 52 chr6 107418140 107418198 -42098839 + L2a LINE L2 3280 3335 -91 6 1404 300 169 0 0 chr6 107418221 107418280 -42098757 - Lx9 LINE L1 -5 7639 7581 6 1404 238 310 58 0 chr6 107418282 107418369 -42098668 + L2a LINE L2 3334 3425 -1 6 1404 335 276 38 46 chr6 107418519 107418634 -42098403 + B3 SINE B2 1 125 -70 6 1404 209 354 80 7 chr6 107420097 107420238 -42096799 - MIR3 SINE MIR -48 160 14 6 1404 231 36 0 0 chr6 107420496 107420524 -42096513 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1404 472 293 17 0 chr6 107420541 107420657 -42096380 + MTE-int LTR MaLR 343 460 -1120 6 1404 1001 254 118 26 chr6 107421005 107421352 -42095685 + MTEb LTR MaLR 1 379 0 6 1404 345 310 188 71 chr6 107421724 107421902 -42095135 - MLT1C LTR MaLR 0 467 248 6 1404 881 288 47 68 chr6 107421902 107422286 -42094751 - MTEa LTR MaLR -2 377 2 6 1404 345 310 188 71 chr6 107422286 107422475 -42094562 - MLT1C LTR MaLR -220 247 57 6 1404 282 271 50 85 chr6 107422478 107422582 -42094455 + MIRb SINE MIR 102 201 -67 6 1404 1911 187 38 6 chr6 107422582 107422948 -42094089 - ORR1C1 LTR MaLR 0 378 1 6 1404 282 271 50 85 chr6 107422948 107422984 -42094053 + MIRb SINE MIR 202 237 -31 6 1404 267 374 49 0 chr6 107423442 107423565 -42093472 + MIRb SINE MIR 45 173 -95 6 1404 25 51 0 0 chr6 107423826 107423865 -42093172 + AT_rich Low_complexity Low_complexity 1 39 0 6 1404 300 137 0 0 chr6 107424062 107424113 -42092924 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 6 1404 317 358 65 57 chr6 107424113 107424359 -42092678 - L2b LINE L2 0 3375 3128 6 1404 484 273 36 7 chr6 107425856 107425996 -42091041 + B1F SINE Alu 1 144 -5 6 1404 222 226 0 36 chr6 107426000 107426055 -42090982 + GA-rich Low_complexity Low_complexity 2 54 0 6 1404 283 217 121 9 chr6 107426317 107426433 -42090604 - L1MC1 LINE L1 -144 6189 6061 6 1404 917 252 10 0 chr6 107426651 107426853 -42090184 - B3 SINE B2 -12 204 1 6 1404 21 57 0 0 chr6 107426963 107426998 -42090039 + AT_rich Low_complexity Low_complexity 1 35 0 6 1404 784 306 25 5 chr6 107427244 107427441 -42089596 + ID_B1 SINE B4 3 203 -21 6 1404 517 33 0 0 chr6 107427441 107427502 -42089535 + (GAA)n Simple_repeat Simple_repeat 2 62 0 6 1404 796 132 12 35 chr6 107427502 107427675 -42089362 + G-rich Low_complexity Low_complexity 1 169 0 6 1404 441 67 17 0 chr6 107427675 107427735 -42089302 + (GAA)n Simple_repeat Simple_repeat 3 63 0 6 1404 916 128 0 27 chr6 107427735 107427919 -42089118 + GA-rich Low_complexity Low_complexity 2 180 0 6 1404 323 247 57 107 chr6 107428058 107428235 -42088802 + MLT1A0 LTR MaLR 19 186 -179 6 1404 378 61 0 0 chr6 107428282 107428331 -42088706 + (A)n Simple_repeat Simple_repeat 1 49 0 6 1404 312 222 14 27 chr6 107428331 107428405 -42088632 + MLT1A0 LTR MaLR 292 364 -44 6 1404 292 341 277 16 chr6 107428485 107428806 -42088231 - L3 LINE CR1 -488 4001 3597 6 1404 692 310 83 19 chr6 107429035 107429301 -42087736 + MTE2b LTR MaLR 30 312 -67 6 1404 478 267 65 20 chr6 107429302 107429367 -42087670 + L1M2 LINE L1 3682 3746 -2394 6 1404 1075 72 14 0 chr6 107429367 107429505 -42087532 + B1_Mus1 SINE Alu 3 142 -6 6 1404 456 19 0 0 chr6 107429513 107429566 -42087471 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1404 478 269 70 18 chr6 107429566 107429756 -42087281 + L1M2 LINE L1 3748 3936 -2204 6 1404 1099 113 103 10 chr6 107429761 107429964 -42087073 + RMER16 LTR ERVK 112 418 -115 6 1404 234 0 0 0 chr6 107429981 107430007 -42087030 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 6 1404 1014 157 0 0 chr6 107430007 107430185 -42086852 + GA-rich Low_complexity Low_complexity 2 179 0 6 1404 532 274 37 14 chr6 107430187 107430402 -42086635 + L1M2 LINE L1 3961 4180 -1963 6 1404 1274 264 42 30 chr6 107430405 107430941 -42086096 + Lx8 LINE L1 5334 5902 -1571 6 1404 477 90 0 0 chr6 107430946 107431013 -42086024 + (GGGAGA)n Simple_repeat Simple_repeat 1 67 0 6 1404 409 247 206 0 chr6 107431444 107431541 -42085496 + B3A SINE B2 1 117 -81 6 1404 402 21 0 0 chr6 107431557 107431604 -42085433 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1404 387 0 0 0 chr6 107431604 107431646 -42085391 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1404 30 27 0 0 chr6 107431647 107431684 -42085353 + AT_rich Low_complexity Low_complexity 1 37 0 6 1404 1190 231 17 23 chr6 107432294 107432595 -42084442 - Lx6 LINE L1 -26 7434 7136 6 1404 607 272 45 35 chr6 107432620 107432818 -42084219 + MER3 DNA MER1_type 2 201 -8 6 1404 187 305 0 0 chr6 107434465 107434524 -42082513 - L3 LINE CR1 -2430 2059 2001 6 1404 17221 17 0 0 chr6 107434986 107437060 -42079977 + L1Md_T LINE L1 3513 5586 -297 6 1404 7909 59 2 0 chr6 107437060 107438054 -42078983 + L1Md_T LINE L1 5587 6582 0 6 1404 423 0 0 0 chr6 107438137 107438184 -42078853 + (TTG)n Simple_repeat Simple_repeat 2 48 0 6 1404 268 140 80 0 chr6 107438896 107438946 -42078091 + B3A SINE B2 1 54 -144 6 1404 222 298 19 28 chr6 107439337 107439444 -42077593 + (TCCA)n Simple_repeat Simple_repeat 4 109 0 6 1404 208 378 0 0 chr6 107439467 107439541 -42077496 + (TCCA)n Simple_repeat Simple_repeat 4 77 0 6 1404 1569 214 24 45 chr6 107439601 107439982 -42077055 + ORR1D1 LTR MaLR 1 373 -1 6 1404 210 286 66 73 chr6 107440364 107440500 -42076537 - MIR SINE MIR -56 206 72 6 1404 1936 250 43 45 chr6 107442363 107443081 -42073956 + Lx9 LINE L1 5472 6333 -1311 6 1404 381 22 0 0 chr6 107443081 107443127 -42073910 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1404 387 0 0 0 chr6 107443127 107443169 -42073868 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1404 1936 313 30 45 chr6 107443169 107443889 -42073148 + Lx9 LINE L1 6334 7048 -596 6 1404 283 308 53 8 chr6 107444014 107444145 -42072892 + Lx9 LINE L1 7279 7415 -229 6 1404 24 0 0 0 chr6 107447166 107447190 -42069847 + AT_rich Low_complexity Low_complexity 1 24 0 6 1404 267 104 0 0 chr6 107448125 107448173 -42068864 + (T)n Simple_repeat Simple_repeat 1 48 0 6 1404 1236 279 41 19 chr6 107448297 107448659 -42068378 + ORR1D2 LTR MaLR 1 370 0 6 1404 907 287 100 48 chr6 107449280 107449610 -42067427 + ORR1E LTR MaLR 5 351 -8 6 1404 311 336 30 38 chr6 107450775 107450908 -42066129 + L3 LINE CR1 3436 3567 -922 6 1404 598 293 24 18 chr6 107451061 107451228 -42065809 + B3 SINE B2 36 203 -13 6 1404 297 128 0 0 chr6 107451650 107451697 -42065340 + (ATGGTG)n Simple_repeat Simple_repeat 6 52 0 6 1404 334 246 45 45 chr6 107451714 107451808 -42065229 - MER58B DNA MER1_type -129 212 114 6 1404 1559 53 0 0 chr6 107451808 107451995 -42065042 - B2_Mm1t SINE B2 -6 187 1 6 1404 334 246 45 45 chr6 107451995 107452032 -42065005 - MER58B DNA MER1_type -228 113 81 6 1404 761 164 0 91 chr6 107452340 107452446 -42064591 + B1_Mm SINE Alu 2 98 -49 6 1404 496 0 0 30 chr6 107452446 107452512 -42064525 + (TA)n Simple_repeat Simple_repeat 1 64 0 6 1404 761 164 0 91 chr6 107452512 107452559 -42064478 + B1_Mm SINE Alu 99 141 -6 6 1404 338 0 24 0 chr6 107452563 107452605 -42064432 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1404 1273 161 0 0 chr6 107452611 107452803 -42064234 - MTC LTR MaLR -8 413 222 6 1404 1961 202 38 21 chr6 107452785 107453209 -42063828 - ORR1B1-int LTR MaLR -1078 431 1 6 1404 777 241 5 88 chr6 107453216 107453428 -42063609 + ORR1C1-int LTR MaLR 1340 1729 -63 6 1404 1718 192 47 11 chr6 107453430 107453793 -42063244 + ORR1C1 LTR MaLR 3 378 0 6 1404 514 179 98 0 chr6 107454935 107455047 -42061990 - B1_Mur2 SINE Alu -3 146 24 6 1404 3215 46 2 19 chr6 107455149 107455567 -42061470 + L1Md_F3 LINE L1 6162 6572 -12 6 1404 708 250 0 7 chr6 107455739 107455880 -42061157 - B1_Mur2 SINE Alu -4 145 6 6 1404 23 0 0 0 chr6 107455897 107455920 -42061117 + AT_rich Low_complexity Low_complexity 1 23 0 6 1404 609 14 0 0 chr6 107456092 107456162 -42060875 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1404 484 339 45 13 chr6 107456694 107456918 -42060119 - MIR SINE MIR -13 249 19 6 1404 765 223 75 11 chr6 107457361 107457547 -42059490 - B3A SINE B2 0 198 1 6 1404 21 0 0 0 chr6 107457630 107457651 -42059386 + AT_rich Low_complexity Low_complexity 1 21 0 6 1404 685 326 66 21 chr6 107457826 107458067 -42058970 - B4A SINE B4 -22 270 19 6 1404 194 150 0 24 chr6 107458147 107458188 -42058849 + (CATATA)n Simple_repeat Simple_repeat 5 44 0 6 1404 218 255 21 0 chr6 107458266 107458313 -42058724 + polypurine Low_complexity Low_complexity 1 48 0 6 1404 207 100 0 0 chr6 107458313 107458343 -42058694 + (CAT)n Simple_repeat Simple_repeat 2 31 0 6 1404 1766 165 118 13 chr6 107458464 107458845 -42058192 - MTC LTR MaLR 0 421 1 6 1404 1334 157 9 5 chr6 107459272 107459496 -42057541 + URR1B DNA MER1_type 1 225 0 6 1404 844 317 80 33 chr6 107459561 107459835 -42057202 - B4 SINE B4 0 292 6 6 1404 414 224 14 27 chr6 107459946 107460093 -42056944 + (CATA)n Simple_repeat Simple_repeat 3 147 0 6 1404 202 137 0 73 chr6 107460124 107460179 -42056858 + (CATA)n Simple_repeat Simple_repeat 4 54 0 6 1404 941 78 47 0 chr6 107460335 107460464 -42056573 + B1_Mus1 SINE Alu 2 136 -12 7 1404 929 110 7 0 chr6 107460464 107460609 -42056428 + (GAAA)n Simple_repeat Simple_repeat 3 148 0 7 1404 588 78 0 94 chr6 107460817 107460945 -42056092 - L1_Mus4 LINE L1 -5 6631 6516 7 1404 1643 161 113 9 chr6 107461233 107461552 -42055485 + ORR1B1 LTR MaLR 41 392 -2 7 1404 196 323 37 75 chr6 107461935 107462042 -42054995 + MIRc SINE MIR 27 129 -139 7 1404 207 0 0 0 chr6 107462100 107462123 -42054914 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1404 729 256 23 29 chr6 107462154 107462327 -42054710 + B3 SINE B2 1 172 -44 7 1404 25 51 0 0 chr6 107462626 107462665 -42054372 + AT_rich Low_complexity Low_complexity 1 39 0 7 1404 430 129 21 11 chr6 107462914 107463008 -42054029 + (TATG)n Simple_repeat Simple_repeat 2 96 0 7 1404 633 226 86 61 chr6 107463011 107463209 -42053828 - B3 SINE B2 -13 203 1 7 1404 435 38 0 0 chr6 107463323 107463376 -42053661 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 1404 297 0 0 0 chr6 107463376 107463408 -42053629 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1404 380 282 36 9 chr6 107463557 107463668 -42053369 + Tigger5 DNA MER2_type 2291 2404 -2 7 1404 210 200 36 0 chr6 107464004 107464059 -42052978 + L2b LINE L2 3319 3375 0 7 1404 182 333 61 0 chr6 107464097 107464163 -42052874 - L3 LINE CR1 -552 3937 3868 7 1404 731 278 46 32 chr6 107464475 107464651 -42052386 + ID_B1 SINE B4 2 186 -38 7 1404 5088 49 3 2 chr6 107464651 107465281 -42051756 + L1Md_F2 LINE L1 5948 6578 -4 7 1404 731 310 79 50 chr6 107465281 107465358 -42051679 + ID_B1 SINE B4 187 267 -25 7 1404 301 333 106 26 chr6 107466369 107466520 -42050517 - RSINE1 SINE B4 0 165 3 7 1404 203 241 25 12 chr6 107466548 107466628 -42050409 + (TA)n Simple_repeat Simple_repeat 1 81 0 7 1404 287 292 15 0 chr6 107466631 107466696 -42050341 - BC1_Mm scRNA scRNA -85 67 2 7 1404 984 253 187 14 chr6 107466765 107467118 -42049919 + MTD LTR MaLR 6 419 0 7 1404 330 26 0 0 chr6 107467307 107467346 -42049691 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1404 240 248 118 142 chr6 107467800 107467969 -42049068 + ORR1C1 LTR MaLR 17 181 -197 7 1404 455 315 13 27 chr6 107468377 107468527 -42048510 + RSINE1 SINE B4 2 149 -16 7 1404 470 220 129 50 chr6 107468557 107468696 -42048341 + RSINE1 SINE B4 2 151 -14 7 1404 977 237 5 9 chr6 107468727 107468940 -42048097 - B3 SINE B2 -4 212 1 7 1404 984 234 5 5 chr6 107468974 107469172 -42047865 + B3 SINE B2 2 199 -17 7 1404 450 88 0 0 chr6 107469173 107469241 -42047796 + (TAAA)n Simple_repeat Simple_repeat 1 68 0 7 1404 23 54 0 0 chr6 107469689 107469726 -42047311 + AT_rich Low_complexity Low_complexity 1 37 0 7 1404 183 353 0 0 chr6 107469772 107469823 -42047214 - MIR3 SINE MIR -4 204 154 7 1404 262 382 41 6 chr6 107470898 107471069 -42045968 + MIR SINE MIR 86 262 0 7 1404 392 268 8 8 chr6 107472047 107472175 -42044862 - L1M3 LINE L1 -559 5630 5503 7 1404 585 320 0 49 chr6 107472213 107472308 -42044729 - RSINE1 SINE B4 0 165 73 7 1404 1908 136 58 12 chr6 107472308 107472651 -42044386 - RLTR15 LTR ERVK 0 359 1 7 1404 585 320 0 49 chr6 107472651 107472719 -42044318 - RSINE1 SINE B4 -93 72 10 7 1404 237 65 0 0 chr6 107472787 107472818 -42044219 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1404 259 269 83 31 chr6 107473169 107473265 -42043772 + MIR3 SINE MIR 96 196 -12 7 1404 1280 110 10 16 chr6 107473795 107473989 -42043048 + B2_Mm1t SINE B2 1 193 0 7 1404 695 265 10 48 chr6 107474207 107474413 -42042624 - B3A SINE B2 0 198 1 7 1404 393 350 142 23 chr6 107474637 107474897 -42042140 + MLT1J2 LTR MaLR 38 328 -120 7 1404 250 248 259 15 chr6 107474995 107475160 -42041877 - MIRb SINE MIR -9 253 43 7 1404 210 71 0 0 chr6 107477394 107477422 -42039615 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1404 375 335 32 50 chr6 107477467 107477687 -42039350 - MIRb SINE MIR -23 245 30 7 1404 4133 47 8 8 chr6 107478308 107478823 -42038214 - L1Md_T LINE L1 -6 6576 6062 7 1404 342 0 0 0 chr6 107478898 107478936 -42038101 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1405 232 167 33 16 chr6 107479619 107479680 -42037357 + (CGGG)n Simple_repeat Simple_repeat 3 64 0 7 1405 351 78 0 0 chr6 107482898 107482949 -42034088 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1405 298 107 36 0 chr6 107483971 107484027 -42033010 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1405 183 268 0 51 chr6 107485345 107485404 -42031633 + MIR SINE MIR 38 93 -115 7 1405 247 180 0 0 chr6 107485653 107485703 -42031334 + CT-rich Low_complexity Low_complexity 2 51 0 7 1405 905 261 0 54 chr6 107485715 107485938 -42031099 + B3 SINE B2 1 211 -5 7 1405 296 342 45 9 chr6 107486312 107486424 -42030613 + MER20 DNA MER1_type 101 216 -3 7 1405 184 274 78 31 chr6 107486990 107487054 -42029983 + MIR SINE MIR 85 151 -57 7 1405 513 80 0 0 chr6 107487470 107487545 -42029492 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 1405 231 103 0 0 chr6 107487893 107487932 -42029105 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1405 246 345 100 12 chr6 107488302 107488472 -42028565 + MamSINE1 SINE tRNA 2 186 -104 7 1405 219 375 22 43 chr6 107488743 107488927 -42028110 - MIR SINE MIR 0 262 83 7 1405 561 55 0 0 chr6 107488952 107489025 -42028012 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 7 1405 679 310 132 0 chr6 107489561 107489819 -42027218 + B4A SINE B4 1 292 0 7 1405 233 208 126 81 chr6 107490246 107490374 -42026663 + MIRc SINE MIR 111 259 -9 7 1405 248 329 47 136 chr6 107491286 107491543 -42025494 + L2b LINE L2 3140 3373 -2 7 1405 198 396 86 40 chr6 107492177 107492551 -42024486 - L2c LINE L2 -48 3339 2949 7 1405 674 244 130 42 chr6 107492587 107492848 -42024189 + B4A SINE B4 1 284 -8 7 1405 288 0 0 0 chr6 107493585 107493617 -42023420 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1405 755 255 58 18 chr6 107493676 107493927 -42023110 - B4 SINE B4 -2 290 8 7 1405 323 330 26 35 chr6 107495315 107495431 -42021606 + B1F1 SINE Alu 1 115 -34 7 1405 319 348 50 17 chr6 107495328 107495448 -42021589 + ID_B1 SINE B4 93 216 -8 7 1405 340 288 0 0 chr6 107495463 107495536 -42021501 + ID4 SINE ID 8 80 -3 7 1405 315 0 0 0 chr6 107496674 107496709 -42020328 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1405 351 118 40 0 chr6 107497193 107497269 -42019768 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 7 1405 648 38 0 0 chr6 107497671 107497750 -42019287 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 7 1405 802 288 26 5 chr6 107497756 107497948 -42019089 - ID_B1 SINE B4 -9 215 20 7 1405 544 210 173 26 chr6 107499361 107499554 -42017483 - MLT1C LTR MaLR -2 465 196 7 1405 274 230 171 11 chr6 107499589 107499677 -42017360 + RSINE1 SINE B4 16 117 -48 7 1405 585 0 0 0 chr6 107499698 107499763 -42017274 + (TTC)n Simple_repeat Simple_repeat 3 67 0 7 1405 356 0 23 0 chr6 107499763 107499807 -42017230 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 1405 410 125 0 0 chr6 107499920 107500000 -42017037 - L1_Mus4 LINE L1 0 6636 6557 7 1405 6046 63 1 2 chr6 107500000 107500822 -42016215 - L1_Mus4 LINE L1 -79 6557 5737 1 1405 396 0 0 0 chr6 107500899 107500943 -42016094 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1405 288 0 0 0 chr6 107500943 107500974 -42016063 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1405 1053 300 30 52 chr6 107501633 107502200 -42014837 - Lx8 LINE L1 -3 7470 6884 4 1405 669 58 0 0 chr6 107502200 107502286 -42014751 + (TC)n Simple_repeat Simple_repeat 1 86 0 5 1405 418 309 106 31 chr6 107502286 107502334 -42014703 - Lx8 LINE L1 -813 6883 6838 4 1405 538 310 39 53 chr6 107502952 107503160 -42013877 - MER3 DNA MER1_type -4 205 1 6 1405 624 250 8 8 chr6 107504265 107504394 -42012643 - B3 SINE B2 -87 129 1 7 1405 244 301 89 83 chr6 107505080 107505274 -42011763 - MIR SINE MIR -26 242 41 8 1405 24 67 0 0 chr6 107506806 107506851 -42010186 + AT_rich Low_complexity Low_complexity 1 45 0 9 1405 432 299 201 15 chr6 107509027 107509231 -42007806 - MIRb SINE MIR -1 267 26 1 1405 413 212 0 12 chr6 107509578 107509659 -42007378 - B3 SINE B2 0 216 137 1 1405 1872 165 76 33 chr6 107509663 107510058 -42006979 - MTC LTR MaLR -8 413 2 1 1405 556 216 9 9 chr6 107510061 107510173 -42006864 - B3 SINE B2 -102 114 3 1 1405 189 0 0 0 chr6 107510360 107510381 -42006656 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1405 305 321 158 0 chr6 107511593 107511783 -42005254 - L1MB4 LINE L1 -130 6050 5831 1 1405 1542 228 31 69 chr6 107511800 107512219 -42004818 - MTD LTR MaLR -2 417 15 1 1405 423 0 0 0 chr6 107512219 107512266 -42004771 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1405 542 296 168 56 chr6 107512285 107512589 -42004448 - MER2 DNA MER2_type -7 338 1 1 1405 963 288 73 79 chr6 107512591 107513085 -42003952 - L1MB4 LINE L1 -383 5785 5300 1 1405 198 0 0 0 chr6 107513085 107513107 -42003930 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1405 963 275 101 16 chr6 107513107 107513578 -42003459 - L1MB4 LINE L1 -841 5299 4783 1 1405 1062 163 119 0 chr6 107514064 107514266 -42002771 + URR1A DNA MER1_type 1 226 0 1 1405 3632 174 51 1 chr6 107514818 107515150 -42001887 - RMER6D LTR ERVK 0 720 374 2 1405 473 0 18 0 chr6 107515150 107515207 -42001830 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1405 375 45 45 0 chr6 107515207 107515272 -42001765 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1405 3632 174 51 1 chr6 107515272 107515624 -42001413 - RMER6D LTR ERVK -347 373 4 2 1405 283 78 39 0 chr6 107519612 107519663 -41997374 + (TTA)n Simple_repeat Simple_repeat 2 54 0 2 1405 556 237 41 111 chr6 107520368 107520539 -41996498 + RSINE1 SINE B4 3 161 -4 2 1405 489 62 0 0 chr6 107522935 107523000 -41994037 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1405 679 269 28 0 chr6 107523011 107523156 -41993881 - B3A SINE B2 -49 149 1 2 1405 459 0 0 0 chr6 107523285 107523336 -41993701 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1405 684 127 0 0 chr6 107523336 107523446 -41993591 + (GA)n Simple_repeat Simple_repeat 1 110 0 2 1405 423 326 38 30 chr6 107525301 107525434 -41991603 + RSINE1 SINE B4 8 141 -24 2 1405 495 0 0 0 chr6 107525436 107525491 -41991546 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1405 670 281 20 7 chr6 107525933 107526080 -41990957 - RSINE1 SINE B4 -15 150 2 3 1405 321 89 0 0 chr6 107526438 107526483 -41990554 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1405 505 264 49 28 chr6 107527416 107527560 -41989477 + RSINE1 SINE B4 8 154 -11 3 1405 198 0 0 0 chr6 107527561 107527583 -41989454 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1405 254 29 29 0 chr6 107527583 107527618 -41989419 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1405 342 0 0 0 chr6 107527774 107527812 -41989225 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1405 695 244 178 18 chr6 107527849 107528074 -41988963 - B4A SINE B4 -29 263 3 3 1405 399 41 0 0 chr6 107528382 107528431 -41988606 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1405 395 243 155 0 chr6 107529282 107529430 -41987607 - MLT1B LTR MaLR -178 212 42 3 1405 182 353 66 41 chr6 107529603 107529724 -41987313 - MIR3 SINE MIR -52 156 33 4 1405 260 247 65 0 chr6 107530142 107530219 -41986818 - L1MA8 LINE L1 -54 6237 6156 4 1405 338 323 126 39 chr6 107530978 107531177 -41985860 - MIRb SINE MIR -42 226 6 4 1405 3701 72 0 0 chr6 107531391 107531889 -41985148 - L1_Mus1 LINE L1 -249 6318 5821 4 1405 1801 64 30 0 chr6 107531889 107532124 -41984913 + L1_Mus1 LINE L1 6326 6567 0 4 1405 1681 296 48 7 chr6 107532540 107533318 -41983719 + L1MA4A LINE L1 5098 5938 -365 4 1405 2787 33 3 0 chr6 107533484 107533836 -41983201 + L1Md_T LINE L1 6243 6582 0 4 1405 225 0 0 0 chr6 107534678 107534703 -41982334 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1405 611 303 87 52 chr6 107535373 107535774 -41981263 - L1MC4 LINE L1 -174 7868 7454 4 1405 225 200 0 0 chr6 107536024 107536069 -41980968 + T-rich Low_complexity Low_complexity 1 45 0 4 1405 198 209 0 0 chr6 107536322 107536365 -41980672 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1405 969 128 29 17 chr6 107536372 107536547 -41980490 - B2_Mm2 SINE B2 -17 178 2 5 1405 399 311 97 32 chr6 107536590 107536778 -41980259 + MIR SINE MIR 18 223 -45 5 1405 252 325 12 0 chr6 107536996 107537076 -41979961 - ID4_ SINE ID -1 82 2 5 1405 2841 45 0 3 chr6 107537503 107537841 -41979196 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1405 10020 51 36 26 chr6 107537841 107539231 -41977806 + IAPEz-int LTR ERVK 8 1411 -5070 5 1405 1739 115 4 4 chr6 107539230 107539492 -41977545 + IAPEz-int LTR ERVK 2236 2497 -5183 5 1405 871 81 24 0 chr6 107539489 107539612 -41977425 + IAPEz-int LTR ERVK 4785 4910 -2770 5 1405 446 66 0 0 chr6 107539612 107539673 -41977364 + IAPEz-int LTR ERVK 3525 3585 -2896 5 1405 19986 16 2 2 chr6 107539665 107542030 -41975007 + IAPEz-int LTR ERVK 4117 6481 0 5 1405 2865 39 0 3 chr6 107542030 107542368 -41974669 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1405 292 295 57 8 chr6 107542521 107542644 -41974393 - MIRc SINE MIR -56 212 84 5 1405 240 143 0 45 chr6 107543028 107543072 -41973965 + ID4 SINE ID 1 42 -41 5 1405 327 52 0 49 chr6 107543310 107543371 -41973666 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1405 740 275 116 21 chr6 107543406 107543647 -41973390 - B4A SINE B4 -28 264 1 5 1405 965 320 141 62 chr6 107543827 107545443 -41971594 + L2a LINE L2 1319 3062 -357 5 1405 258 285 162 27 chr6 107545480 107545628 -41971409 + MER3 DNA MER1_type 41 208 -1 6 1405 322 332 142 51 chr6 107545636 107545931 -41971106 + L2a LINE L2 3070 3391 -35 5 1405 194 282 27 121 chr6 107545820 107545969 -41971068 - L3 LINE CR1 -2279 2210 2076 6 1405 202 254 56 0 chr6 107546102 107546173 -41970864 + L2a LINE L2 3272 3346 -80 6 1405 492 284 36 26 chr6 107547974 107548281 -41968756 + L1MA6 LINE L1 5991 6300 0 6 1405 233 0 0 59 chr6 107548423 107548457 -41968580 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1405 211 295 12 25 chr6 107548774 107548854 -41968183 + MIR3 SINE MIR 127 205 -3 6 1405 209 57 0 28 chr6 107549321 107549357 -41967680 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1405 295 216 58 64 chr6 107549505 107549582 -41967455 - Lx8 LINE L1 -1548 5925 5858 6 1405 2883 68 0 92 chr6 107549582 107550018 -41967019 - MTA_Mm LTR MaLR 0 396 1 6 1405 886 219 66 67 chr6 107550018 107550154 -41966883 - Lx8 LINE L1 -1616 5857 5726 6 1405 943 85 28 7 chr6 107550154 107550296 -41966741 - L1_Mus1 LINE L1 0 6567 6423 6 1405 886 232 99 78 chr6 107550296 107550649 -41966388 - Lx8 LINE L1 -155 5725 5353 6 1405 240 243 0 0 chr6 107550692 107550757 -41966280 - Lx8 LINE L1 -723 5154 5090 6 1405 235 393 49 85 chr6 107550856 107551020 -41966017 - MLT1K LTR MaLR -352 243 86 7 1405 551 285 106 4 chr6 107551193 107551429 -41965608 + MIR SINE MIR 3 262 0 7 1405 287 322 22 11 chr6 107551431 107551522 -41965515 - MIR SINE MIR -92 116 25 7 1405 441 66 0 0 chr6 107551949 107552010 -41965027 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1405 432 0 0 0 chr6 107552865 107552913 -41964124 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1405 291 93 0 0 chr6 107553903 107553946 -41963091 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7 1405 573 292 74 7 chr6 107553952 107554100 -41962937 + MLT1A1 LTR MaLR 181 338 -70 7 1405 594 289 36 16 chr6 107554699 107554892 -41962145 + B3A SINE B2 2 198 0 7 1405 442 308 57 47 chr6 107555665 107555876 -41961161 + MIRb SINE MIR 5 217 -51 7 1405 289 378 26 7 chr6 107556063 107556215 -41960822 - MER104 DNA Tc2 -23 158 4 7 1405 249 33 0 0 chr6 107556509 107556539 -41960498 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1405 293 62 21 0 chr6 107556854 107556902 -41960135 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 8 1405 9838 19 0 0 chr6 107556904 107558770 -41958267 - L1Md_T LINE L1 -1 6581 4716 8 1405 210 206 13 27 chr6 107559040 107559115 -41957922 + GA-rich Low_complexity Low_complexity 2 75 0 8 1405 2826 70 7 22 chr6 107559228 107559639 -41957398 - L1_Mus4 LINE L1 -1 6635 6231 8 1405 396 0 0 0 chr6 107559720 107559764 -41957273 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1405 594 333 28 21 chr6 107559819 107560101 -41956936 - B4A SINE B4 -7 285 2 8 1405 1536 236 25 5 chr6 107560101 107560468 -41956569 - MTEa LTR MaLR -5 374 1 8 1405 321 335 27 75 chr6 107560482 107560669 -41956368 - MER5B DNA MER1_type 0 178 1 8 1405 306 266 3 86 chr6 107560821 107560918 -41956119 + MLT1I LTR MaLR 51 143 -301 8 1405 199 239 116 29 chr6 107561451 107561520 -41955517 - MIRc SINE MIR -120 148 74 9 1405 398 275 129 29 chr6 107561684 107561894 -41955143 - L1MA6 LINE L1 0 6300 6070 9 1405 261 0 0 0 chr6 107562041 107562070 -41954967 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1405 303 93 0 0 chr6 107562558 107562601 -41954436 + (TTA)n Simple_repeat Simple_repeat 1 43 0 9 1405 817 273 29 5 chr6 107563216 107563422 -41953615 - ORR1C2 LTR MaLR 0 384 174 9 1405 289 357 142 6 chr6 107563456 107563639 -41953398 + MLT1I LTR MaLR 362 569 0 8 1405 206 341 67 11 chr6 107564521 107564610 -41952427 + L4 LINE RTE 1637 1730 -299 9 1405 19171 136 46 12 chr6 107565055 107567880 -41949157 + L1VL1 LINE L1 407 3343 -2540 9 1405 207 0 0 0 chr6 107567880 107567903 -41949134 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1405 19171 132 38 4 chr6 107567903 107569253 -41947784 + L1VL1 LINE L1 3344 4731 -1152 9 1405 183 42 0 0 chr6 107569253 107569277 -41947760 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 9 1405 19171 132 38 4 chr6 107569277 107569338 -41947699 + L1VL1 LINE L1 4732 4795 -1088 9 1405 321 47 0 0 chr6 107569572 107569615 -41947422 + (TTA)n Simple_repeat Simple_repeat 3 45 0 9 1405 5138 35 0 2 chr6 107569708 107570314 -41946723 + L1Md_F3 LINE L1 5979 6583 -1 1 1405 231 286 53 79 chr6 107571166 107571280 -41945757 + MER20B DNA MER1_type 1 111 -672 1 1405 1018 68 15 0 chr6 107572031 107572164 -41944873 - B1_Mus1 SINE Alu -13 135 1 1 1405 199 264 111 0 chr6 107572335 107572407 -41944630 - MIR3 SINE MIR -9 199 120 1 1405 467 307 174 6 chr6 107573109 107573276 -41943761 - ID_B1 SINE B4 -21 203 9 1 1405 336 291 102 6 chr6 107573686 107573870 -41943167 - MIRb SINE MIR -46 222 19 1 1405 257 149 21 0 chr6 107576033 107576080 -41940957 - tRNA-Ala-GCY_ tRNA tRNA -22 53 6 1 1405 252 241 17 0 chr6 107576080 107576091 -41940946 - ID4 SINE ID -24 59 1 1 1405 378 356 140 27 chr6 107576287 107576509 -41940528 + MIRb SINE MIR 10 256 -12 1 1405 1428 238 89 12 chr6 107576847 107577183 -41939854 + MTD LTR MaLR 44 405 -14 1 1405 237 65 0 0 chr6 107577475 107577506 -41939531 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1405 2179 92 13 16 chr6 107577524 107577834 -41939203 - RLTR27 LTR ERVK 0 309 1 1 1405 258 269 113 71 chr6 107577840 107578008 -41939029 + MLT1K LTR MaLR 394 568 -27 1 1405 306 50 0 0 chr6 107579282 107579322 -41937715 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1405 1225 234 67 5 chr6 107579467 107579734 -41937303 + B4A SINE B4 2 292 0 1 1405 227 250 0 0 chr6 107579734 107579786 -41937251 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1405 503 323 18 76 chr6 107580060 107580231 -41936806 + B4A SINE B4 4 164 -128 1 1405 1585 159 63 3 chr6 107580263 107580547 -41936490 + ORR1A1 LTR MaLR 6 306 -40 1 1405 1151 88 0 0 chr6 107580548 107580695 -41936342 + B1_Mus1 SINE Alu 2 148 0 1 1405 294 29 0 0 chr6 107580695 107580730 -41936307 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1405 343 85 0 0 chr6 107580732 107580779 -41936258 + ORR1A1 LTR MaLR 272 318 -8 1 1405 239 273 0 68 chr6 107580810 107580869 -41936168 + RSINE1 SINE B4 111 165 0 1 1405 333 68 0 0 chr6 107581190 107581234 -41935803 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 1 1405 291 311 0 86 chr6 107582990 107583039 -41933998 + B4 SINE B4 51 156 -136 1 1405 386 194 0 0 chr6 107583039 107583106 -41933931 + PB1D9 SINE Alu 6 72 -48 1 1405 258 32 0 0 chr6 107583129 107583160 -41933877 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 1405 212 361 8 78 chr6 107583179 107583235 -41933802 - MIRc SINE MIR -79 189 142 1 1405 1722 231 51 20 chr6 107583235 107583743 -41933294 + RLTR11A2 LTR ERVK 1 524 -3 1 1405 212 361 8 78 chr6 107583743 107583815 -41933222 - MIRc SINE MIR -127 141 70 1 1405 533 336 9 58 chr6 107586241 107586465 -41930572 + MLT1C LTR MaLR 252 464 -3 1 1405 836 202 120 21 chr6 107586759 107586951 -41930086 + URR1A DNA MER1_type 1 211 -15 1 1405 951 209 71 0 chr6 107587804 107588000 -41929037 - B3 SINE B2 -5 211 2 1 1405 1715 270 34 42 chr6 107588637 107589163 -41927874 + RMER5 LTR ERV1 13 534 0 1 1405 261 0 0 0 chr6 107590971 107591000 -41926037 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1405 1523 281 28 17 chr6 107591365 107591832 -41925205 - RMER5 LTR ERV1 -30 504 33 1 1405 374 0 22 0 chr6 107592661 107592707 -41924330 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1405 1366 191 105 3 chr6 107592991 107593295 -41923742 - RMER5 LTR ERV1 -9 525 191 1 1405 3205 209 47 107 chr6 107593359 107594322 -41922715 - RMER1C Other Other -2 1340 436 1 1405 866 187 96 6 chr6 107594322 107594489 -41922548 - RMER5 LTR ERV1 -334 200 19 1 1405 532 263 0 0 chr6 107594616 107594715 -41922322 - RSINE1 SINE B4 -65 100 2 1 1405 379 361 118 40 chr6 107594744 107595041 -41921996 - LTR16E1 LTR ERVL -5 533 214 1 1405 702 361 75 14 chr6 107595260 107595606 -41921431 - MLT2B2 LTR ERVL 0 515 149 1 1405 68 34 0 0 chr6 107595623 107595712 -41921325 + AT_rich Low_complexity Low_complexity 1 89 0 1 1405 1298 308 56 13 chr6 107595793 107596348 -41920689 - Lx8 LINE L1 -6 7467 6889 1 1405 392 233 22 0 chr6 107596555 107596645 -41920392 - MLT2B2 LTR ERVL -462 92 1 1 1405 228 328 53 60 chr6 107596710 107596843 -41920194 - MER5A DNA MER1_type -18 171 40 1 1405 368 325 37 47 chr6 107596785 107596985 -41920052 - MLT1H1 LTR MaLR -306 243 1 1 1405 405 0 0 0 chr6 107597547 107597592 -41919445 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1405 441 0 0 0 chr6 107597663 107597712 -41919325 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1405 1142 87 5 51 chr6 107597846 107598041 -41918996 - Lx LINE L1 -2 6652 6467 1 1405 216 0 0 0 chr6 107598995 107599019 -41918018 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1405 249 253 84 42 chr6 107599618 107599713 -41917324 - LTR89 LTR ERVL? -570 309 211 1 1405 531 45 0 0 chr6 107600709 107600775 -41916262 + (CTTG)n Simple_repeat Simple_repeat 2 67 0 1 1405 571 246 7 36 chr6 107600784 107600923 -41916114 - RSINE1 SINE B4 -28 137 3 1 1405 640 275 0 15 chr6 107601091 107601224 -41915813 - B1_Mur4 SINE Alu -19 131 1 1 1405 430 321 35 9 chr6 107601133 107601246 -41915791 - B4 SINE B4 -113 179 64 1 1405 628 198 17 0 chr6 107601851 107601967 -41915070 - PB1D9 SINE Alu -1 119 2 1 1405 27 29 0 0 chr6 107601975 107602009 -41915028 + AT_rich Low_complexity Low_complexity 1 34 0 1 1405 346 257 176 5 chr6 107602183 107602371 -41914666 - Lx8 LINE L1 -205 7268 7049 1 1405 1866 78 8 0 chr6 107602577 107602832 -41914205 + L1Md_F2 LINE L1 6324 6580 -2 1 1405 405 0 0 0 chr6 107603178 107603223 -41913814 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1405 201 234 21 0 chr6 107604010 107604057 -41912980 + CT-rich Low_complexity Low_complexity 4 51 0 1 1405 279 302 12 0 chr6 107604352 107604438 -41912599 + G-rich Low_complexity Low_complexity 5 91 0 1 1405 468 0 0 0 chr6 107604526 107604578 -41912459 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1405 585 300 99 20 chr6 107604579 107604831 -41912206 - B4A SINE B4 -18 274 3 1 1405 309 356 39 0 chr6 107605566 107605670 -41911367 + B1F1 SINE Alu 6 113 -36 1 1405 26 0 0 0 chr6 107605692 107605718 -41911319 + AT_rich Low_complexity Low_complexity 1 26 0 1 1405 321 264 23 119 chr6 107605936 107606155 -41910882 - B3A SINE B2 0 198 1 1 1405 213 318 114 76 chr6 107607279 107607490 -41909547 - MIRb SINE MIR -2 266 48 1 1405 239 356 83 65 chr6 107607562 107607887 -41909150 + MLT1H1 LTR MaLR 12 384 -165 1 1405 664 212 137 66 chr6 107608719 107608901 -41908136 - B3A SINE B2 -3 195 1 1 1406 1021 273 31 14 chr6 107610148 107610434 -41906603 + B4A SINE B4 1 291 -1 1 1406 456 19 0 0 chr6 107610467 107610520 -41906517 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1406 399 345 7 7 chr6 107610537 107610683 -41906354 + B1F SINE Alu 3 148 -1 1 1406 241 208 0 19 chr6 107610685 107610739 -41906298 + GA-rich Low_complexity Low_complexity 2 54 0 1 1406 181 283 86 86 chr6 107611452 107611568 -41905469 - L4 LINE RTE -755 1274 1159 1 1406 336 48 0 0 chr6 107612439 107612481 -41904556 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1406 657 278 78 26 chr6 107612530 107612722 -41904315 - B4 SINE B4 -6 286 85 1 1406 514 202 120 26 chr6 107612733 107612850 -41904187 - B1_Mur4 SINE Alu -7 143 16 1 1406 396 321 94 30 chr6 107612850 107612935 -41904102 - B4A SINE B4 -72 220 6 1 1406 209 33 0 32 chr6 107613030 107613061 -41903976 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1406 38909 16 0 6 chr6 107613115 107619109 -41897928 - L1Md_A LINE L1 -1 6581 630 1 1406 1693 32 5 5 chr6 107619176 107619392 -41897645 - L1Md_F2 LINE L1 0 6582 6367 1 1406 409 292 197 51 chr6 107619782 107620056 -41896981 + ORR1D2 LTR MaLR 1 314 -56 1 1406 2931 160 2 38 chr6 107620063 107620615 -41896422 - L1Md_F2 LINE L1 -1 6581 6050 1 1406 36265 30 1 0 chr6 107620806 107627682 -41889355 - L1Md_T LINE L1 0 6585 1 1 1406 5490 180 42 10 chr6 107628825 107629964 -41887073 - RMER12 LTR ERVK 0 1572 1 1 1406 235 350 118 25 chr6 107630365 107630526 -41886511 - L3b LINE CR1 -8 474 299 1 1406 373 360 113 47 chr6 107630637 107631146 -41885891 - L2a LINE L2 -26 3400 2862 1 1406 195 42 0 0 chr6 107631628 107631652 -41885385 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1406 306 0 0 0 chr6 107633066 107633100 -41883937 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 1 1406 751 332 94 25 chr6 107633183 107633587 -41883450 + MLT1C LTR MaLR 36 467 0 1 1406 387 387 53 19 chr6 107633813 107634134 -41882903 + L1MEc LINE L1 92 423 -5977 1 1406 35748 19 0 8 chr6 107634428 107639613 -41877424 + L1Md_T LINE L1 443 5586 -297 1 1406 8375 34 0 0 chr6 107639613 107640597 -41876440 + L1Md_T LINE L1 5587 6570 -12 1 1406 849 295 22 22 chr6 107640864 107641231 -41875806 + L1MB7 LINE L1 5263 5629 -555 1 1406 207 0 0 0 chr6 107641275 107641298 -41875739 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1406 249 33 0 0 chr6 107641384 107641414 -41875623 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 1 1406 463 202 21 21 chr6 107641419 107641515 -41875522 - B1_Mur3 SINE Alu -8 141 46 1 1406 298 160 210 60 chr6 107641449 107641549 -41875488 - MT2B LTR ERVL -336 265 151 1 1406 1075 233 100 25 chr6 107641607 107642055 -41874982 + L1MB7 LINE L1 5693 6174 -10 1 1406 1065 241 7 43 chr6 107642645 107642927 -41874110 + Lx6 LINE L1 6987 7258 -202 1 1406 1136 232 9 69 chr6 107642926 107643259 -41873778 + Lx6 LINE L1 7125 7437 -23 1 1406 585 305 45 22 chr6 107643273 107643451 -41873586 + B3A SINE B2 1 182 -16 1 1406 2581 198 93 66 chr6 107643465 107644263 -41872774 + RMER19B LTR ERVK 1 902 0 1 1406 180 125 0 0 chr6 107644273 107644305 -41872732 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1406 1132 183 58 0 chr6 107644785 107644993 -41872044 + URR1A DNA MER1_type 5 224 -2 2 1406 396 0 0 0 chr6 107645565 107645609 -41871428 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1406 493 0 65 0 chr6 107645606 107645683 -41871354 + (GAA)n Simple_repeat Simple_repeat 3 84 0 2 1406 419 141 0 13 chr6 107646515 107646594 -41870443 + CT-rich Low_complexity Low_complexity 4 81 0 2 1406 208 309 122 10 chr6 107646902 107647000 -41870037 + MIRb SINE MIR 4 112 -156 2 1406 291 134 8 70 chr6 107647046 107647174 -41869863 + (CAGAGA)n Simple_repeat Simple_repeat 1 120 0 2 1406 341 297 105 35 chr6 107647682 107647825 -41869212 + MTD LTR MaLR 5 157 -262 2 1406 378 209 29 22 chr6 107647837 107647974 -41869063 + (TA)n Simple_repeat Simple_repeat 1 138 0 2 1406 4744 245 57 9 chr6 107648020 107649291 -41867746 + Lx9 LINE L1 6313 7644 0 2 1406 437 335 98 10 chr6 107649300 107649493 -41867544 + MTD LTR MaLR 210 419 0 2 1406 946 297 131 29 chr6 107649606 107650424 -41866613 + L1_Rod LINE L1 1558 2458 -3389 2 1406 378 0 0 0 chr6 107650425 107650467 -41866570 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1406 450 0 0 0 chr6 107650467 107650516 -41866521 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1406 338 61 20 0 chr6 107651885 107651934 -41865103 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1406 325 322 46 26 chr6 107652178 107652331 -41864706 + L1M5 LINE L1 5629 5784 -340 2 1406 394 283 9 19 chr6 107652595 107652703 -41864334 - B4 SINE B4 -185 107 1 2 1406 22 56 0 0 chr6 107652897 107652933 -41864104 + AT_rich Low_complexity Low_complexity 1 36 0 2 1406 360 0 0 0 chr6 107653157 107653197 -41863840 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 2 1406 279 71 0 0 chr6 107653254 107653296 -41863741 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 2 1406 261 75 0 0 chr6 107653397 107653437 -41863600 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1406 2082 46 0 0 chr6 107653624 107653893 -41863144 + L1Md_F2 LINE L1 5933 6182 -400 2 1406 587 296 199 0 chr6 107654934 107655120 -41861917 + ID_B1 SINE B4 2 224 0 2 1406 652 272 28 50 chr6 107656851 107657033 -41860004 - MLT1A0 LTR MaLR -9 356 179 2 1406 1301 148 10 5 chr6 107657241 107657445 -41859592 - URR1A DNA MER1_type -12 214 10 2 1406 1063 302 31 31 chr6 107657690 107658144 -41858893 + Lx8 LINE L1 7001 7454 -19 2 1406 1121 310 84 31 chr6 107659235 107659785 -41857252 + MER20B DNA MER1_type 199 777 -6 2 1406 447 19 0 0 chr6 107660258 107660310 -41856727 + (TTA)n Simple_repeat Simple_repeat 3 54 0 2 1406 191 225 68 56 chr6 107661157 107661242 -41855795 - MIR SINE MIR -55 153 79 2 1406 332 338 60 33 chr6 107661330 107661480 -41855557 + MER57C2 LTR ERV1 233 386 -48 2 1406 297 0 0 0 chr6 107661878 107661911 -41855126 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1406 849 240 67 10 chr6 107663852 107664046 -41852991 + B3 SINE B2 9 213 -3 2 1406 380 318 67 7 chr6 107664553 107664702 -41852335 - MIRb SINE MIR -7 261 104 2 1406 211 323 0 0 chr6 107665103 107665168 -41851869 + GA-rich Low_complexity Low_complexity 1 65 0 2 1406 526 330 98 66 chr6 107665353 107665730 -41851307 + L2a LINE L2 3026 3414 -12 2 1406 195 318 149 31 chr6 107665789 107665984 -41851053 + L2a LINE L2 3106 3323 -103 2 1406 206 265 0 0 chr6 107668016 107668065 -41848972 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1406 211 236 18 0 chr6 107668090 107668145 -41848892 + (TATG)n Simple_repeat Simple_repeat 2 57 0 2 1406 446 285 215 0 chr6 107668350 107668373 -41848664 - B3A SINE B2 -5 193 168 2 1406 360 0 0 0 chr6 107668373 107668413 -41848624 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1406 446 285 215 0 chr6 107668413 107668547 -41848490 - B3A SINE B2 -31 167 3 2 1406 345 24 0 0 chr6 107668593 107668635 -41848402 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1406 315 335 34 78 chr6 107668919 107669123 -41847914 + B4A SINE B4 26 220 -72 2 1406 624 203 38 30 chr6 107669002 107669134 -41847903 + B1_Mur3 SINE Alu 17 149 0 2 1406 652 242 35 131 chr6 107669158 107669448 -41847589 + MLT1B LTR MaLR 107 368 -22 2 1406 183 281 182 64 chr6 107670041 107670151 -41846886 + L4 LINE RTE 1493 1615 -414 2 1406 180 354 50 68 chr6 107670071 107670292 -41846745 - L2c LINE L2 -12 3375 3159 2 1406 344 22 22 0 chr6 107670318 107670363 -41846674 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1406 897 74 0 0 chr6 107670406 107670528 -41846509 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 2 1406 321 26 0 0 chr6 107670843 107670881 -41846156 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 1406 284 260 151 19 chr6 107670969 107671075 -41845962 + Lx9 LINE L1 7120 7239 -405 2 1406 261 0 0 0 chr6 107671351 107671380 -41845657 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1406 1173 131 74 0 chr6 107673002 107673125 -41843912 - Lx4A LINE L1 -913 6145 6023 2 1406 286 23 47 0 chr6 107673125 107673168 -41843869 + (TTTTA)n Simple_repeat Simple_repeat 4 48 0 2 1406 1173 131 74 0 chr6 107673168 107673273 -41843764 - Lx4A LINE L1 -1036 6022 5901 2 1406 1200 142 9 52 chr6 107673272 107673502 -41843535 + Lx4A LINE L1 6135 6354 -704 2 1406 2954 146 44 18 chr6 107673502 107674004 -41843033 + Lx4A LINE L1 6544 7058 0 2 1406 4031 232 156 28 chr6 107674009 107674611 -41842426 - RLTR22_Mus LTR ERVK -238 1570 813 2 1406 189 0 0 0 chr6 107674611 107674632 -41842405 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1406 4031 232 156 28 chr6 107674632 107675412 -41841625 - RLTR22_Mus LTR ERVK -996 812 11 2 1406 531 307 105 24 chr6 107677424 107677671 -41839366 - LTR16E1 LTR ERVL -161 377 111 2 1406 250 265 99 93 chr6 107677936 107678098 -41838939 + MIR SINE MIR 79 241 -21 2 1406 220 355 56 8 chr6 107678312 107678437 -41838600 + MIRm SINE MIR 21 151 -125 2 1406 4207 103 35 41 chr6 107678977 107679636 -41837401 + Lx4A LINE L1 6401 7055 -3 2 1406 29 0 0 0 chr6 107679637 107679666 -41837371 + AT_rich Low_complexity Low_complexity 1 29 0 2 1406 243 318 104 33 chr6 107679965 107680147 -41836890 - MIRc SINE MIR -14 254 60 2 1406 441 0 0 0 chr6 107681591 107681640 -41835397 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1406 360 133 0 0 chr6 107681640 107681700 -41835337 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1406 346 350 62 38 chr6 107681827 107682038 -41834999 + MamSINE1 SINE tRNA 14 229 -61 2 1406 390 195 0 61 chr6 107682334 107682416 -41834621 - ID2 SINE ID -3 80 4 2 1406 361 378 56 75 chr6 107683208 107683514 -41833523 - ORR1E LTR MaLR -5 354 55 2 1406 279 375 0 0 chr6 107683568 107683672 -41833365 - MIR SINE MIR -67 195 92 2 1406 297 51 0 0 chr6 107684292 107684331 -41832706 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1406 246 335 93 45 chr6 107684752 107684945 -41832092 - MIRc SINE MIR -29 239 29 2 1406 280 279 165 78 chr6 107685066 107685296 -41831741 + MIR SINE MIR 20 242 -20 2 1406 327 49 0 0 chr6 107685300 107685341 -41831696 + (TCC)n Simple_repeat Simple_repeat 2 42 0 2 1406 706 299 35 30 chr6 107685379 107685582 -41831455 - B3 SINE B2 -2 214 11 2 1406 21 36 0 0 chr6 107685651 107685679 -41831358 + AT_rich Low_complexity Low_complexity 1 28 0 2 1406 483 250 19 0 chr6 107686080 107686188 -41830849 - B3 SINE B2 -106 110 1 2 1406 207 0 0 0 chr6 107686594 107686617 -41830420 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1406 432 0 0 0 chr6 107686617 107686665 -41830372 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1406 269 258 29 29 chr6 107686702 107686770 -41830267 - ID4_ SINE ID -11 72 5 2 1406 322 240 123 35 chr6 107686795 107686923 -41830114 - B1F2 SINE Alu -2 147 8 2 1406 221 292 14 14 chr6 107686932 107687005 -41830032 + MIR SINE MIR 7 79 -183 2 1406 273 171 13 38 chr6 107687091 107687170 -41829867 + (TATAA)n Simple_repeat Simple_repeat 5 81 0 2 1406 806 338 70 28 chr6 107687171 107687711 -41829326 + MLT1E2 LTR MaLR 40 621 -6 2 1406 277 263 63 38 chr6 107687895 107687974 -41829063 + BC1_Mm scRNA scRNA 14 94 -58 2 1406 243 280 79 34 chr6 107687999 107688157 -41828880 - MIRb SINE MIR -11 251 94 2 1406 195 372 64 27 chr6 107688765 107688953 -41828084 + MIRb SINE MIR 25 219 -49 2 1406 2460 258 179 13 chr6 107689883 107691088 -41825949 + RMER1A Other Other 1 1025 -5 2 1406 579 341 58 0 chr6 107691104 107691277 -41825760 - B3A SINE B2 -15 183 1 2 1406 460 302 0 0 chr6 107691277 107691380 -41825657 - B4A SINE B4 -62 230 128 2 1406 22 0 0 0 chr6 107692465 107692487 -41824550 + AT_rich Low_complexity Low_complexity 1 22 0 2 1406 182 150 25 0 chr6 107692490 107692530 -41824507 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1406 256 240 75 19 chr6 107692532 107692638 -41824399 + L1MA9 LINE L1 6201 6312 0 2 1406 593 317 6 75 chr6 107692712 107692886 -41824151 + RSINE1 SINE B4 4 165 0 2 1406 433 0 35 0 chr6 107692905 107692962 -41824075 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 2 1406 587 242 47 0 chr6 107692986 107693114 -41823923 + B1_Mur2 SINE Alu 1 134 -15 2 1406 204 111 0 0 chr6 107693117 107693153 -41823884 + (TCTCTG)n Simple_repeat Simple_repeat 3 38 0 2 1406 473 300 18 18 chr6 107693201 107693313 -41823724 - RSINE1 SINE B4 -13 152 41 2 1406 247 300 156 49 chr6 107693504 107693851 -41823186 + L3 LINE CR1 3559 3942 -547 2 1406 242 328 51 29 chr6 107693892 107694030 -41823007 + Lx8 LINE L1 5849 5989 -1655 2 1406 2144 289 29 26 chr6 107694114 107694967 -41822070 + Lx8 LINE L1 6158 6985 -659 2 1406 708 316 51 53 chr6 107697926 107698281 -41818756 + MLT2C2 LTR ERVL 6 359 -105 2 1406 204 40 0 0 chr6 107698540 107698565 -41818472 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 1406 297 305 20 3 chr6 107698565 107698659 -41818378 - B1F SINE Alu -19 101 3 2 1406 256 378 50 0 chr6 107699468 107699587 -41817450 + MLT1J-int LTR MaLR 19 143 -1244 2 1406 339 304 95 45 chr6 107699798 107699834 -41817203 + ORR1E LTR MaLR 18 58 -301 2 1406 342 67 0 0 chr6 107699834 107699879 -41817158 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1406 339 304 95 45 chr6 107699879 107700021 -41817016 + ORR1E LTR MaLR 59 204 -155 2 1406 742 290 89 10 chr6 107700056 107700258 -41816779 - ID_B1 SINE B4 0 224 7 3 1406 2348 154 16 26 chr6 107700320 107700741 -41816296 + ORR1B1 LTR MaLR 1 386 -8 3 1406 480 364 103 45 chr6 107701007 107701666 -41815371 + L2a LINE L2 2488 3179 -247 3 1406 1339 84 0 0 chr6 107701690 107701868 -41815169 + L1_Mus2 LINE L1 6388 6565 -1 3 1406 581 115 10 0 chr6 107701945 107702041 -41814996 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 1406 216 0 0 0 chr6 107702473 107702497 -41814540 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1406 264 310 59 36 chr6 107702628 107702785 -41814252 - MIR SINE MIR -107 155 2 3 1406 239 267 41 43 chr6 107702814 107702925 -41814112 + L2c LINE L2 3081 3197 -178 3 1406 28 0 0 0 chr6 107703405 107703433 -41813604 + AT_rich Low_complexity Low_complexity 1 28 0 3 1406 462 317 265 27 chr6 107704130 107704361 -41812676 + B4 SINE B4 6 291 -1 3 1406 250 316 31 22 chr6 107704506 107704631 -41812406 + MIR3 SINE MIR 109 237 -31 3 1406 225 0 0 0 chr6 107704863 107704888 -41812149 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1406 539 299 33 33 chr6 107705614 107705794 -41811243 - B3A SINE B2 -17 181 2 3 1406 549 0 0 0 chr6 107705836 107705897 -41811140 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1406 761 295 63 30 chr6 107706157 107706583 -41810454 - L1MA5A LINE L1 -365 5932 5493 3 1406 708 289 10 114 chr6 107706767 107706894 -41810143 - MLT1A0 LTR MaLR -106 259 143 3 1406 654 244 74 32 chr6 107706894 107707084 -41809953 - B3A SINE B2 0 198 1 3 1406 708 289 10 114 chr6 107707084 107707245 -41809792 - MLT1A0 LTR MaLR -223 142 1 3 1406 241 306 79 36 chr6 107708868 107709007 -41808030 - MIRb SINE MIR -39 229 85 3 1406 644 141 6 50 chr6 107709188 107709367 -41807670 + (TAGA)n Simple_repeat Simple_repeat 1 171 0 3 1406 309 109 0 0 chr6 107709368 107709414 -41807623 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 3 1406 1159 195 5 27 chr6 107709558 107709779 -41807258 + B3 SINE B2 1 216 0 3 1406 660 308 51 63 chr6 107709880 107710389 -41806648 - MLT1D LTR MaLR -2 503 1 3 1406 260 246 164 30 chr6 107710481 107710615 -41806422 + L1ME4a LINE L1 5969 6120 -4 3 1406 835 102 102 0 chr6 107711418 107711565 -41805472 - L1_Mus3 LINE L1 -1 6637 6476 3 1406 181 299 59 15 chr6 107711598 107711666 -41805371 - MIR SINE MIR -118 144 74 3 1406 435 342 56 39 chr6 107711791 107712025 -41805012 - MIR SINE MIR -24 238 1 3 1406 333 0 0 0 chr6 107712037 107712074 -41804963 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1406 27 81 0 0 chr6 107712509 107712571 -41804466 + AT_rich Low_complexity Low_complexity 1 62 0 3 1406 923 238 9 19 chr6 107712659 107712869 -41804168 + B3 SINE B2 5 212 -4 3 1406 398 338 60 82 chr6 107713139 107713455 -41803582 - ORR1E LTR MaLR -37 322 14 3 1406 307 0 23 23 chr6 107713819 107713863 -41803174 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1406 616 298 64 50 chr6 107715077 107715296 -41801741 + B4A SINE B4 9 230 -62 3 1406 263 362 10 41 chr6 107715301 107715399 -41801638 + RSINE1 SINE B4 8 102 -63 3 1406 1791 147 20 131 chr6 107715399 107715797 -41801240 - ORR1B1 LTR MaLR 0 394 41 3 1406 183 184 0 0 chr6 107715829 107715867 -41801170 + (CATA)n Simple_repeat Simple_repeat 1 38 0 3 1406 405 0 0 0 chr6 107715999 107716044 -41800993 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1406 511 321 26 40 chr6 107716182 107716300 -41800737 - MER46C DNA MER2_type -104 234 122 3 1406 1779 177 48 46 chr6 107716300 107716449 -41800588 + ORR1D1 LTR MaLR 1 163 -211 3 1406 984 75 0 0 chr6 107716449 107716596 -41800441 + (TC)n Simple_repeat Simple_repeat 2 148 0 3 1406 420 20 0 0 chr6 107716596 107716644 -41800393 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1406 1779 177 48 46 chr6 107716644 107716866 -41800171 + ORR1D1 LTR MaLR 164 373 -1 3 1406 511 321 26 40 chr6 107716866 107716974 -41800063 - MER46C DNA MER2_type -217 121 11 3 1406 2486 164 122 18 chr6 107717003 107717546 -41799491 + L1_Mur3 LINE L1 4654 5250 -630 3 1406 882 78 0 0 chr6 107717546 107717674 -41799363 + (GGAAA)n Simple_repeat Simple_repeat 3 130 0 3 1406 2486 164 122 18 chr6 107717674 107717746 -41799291 + L1_Mur3 LINE L1 5251 5332 -548 3 1406 4559 26 0 0 chr6 107717743 107718339 -41798698 - L1Md_F3 LINE L1 -446 6138 5544 3 1406 2527 39 0 3 chr6 107718339 107718647 -41798390 + L1Md_F3 LINE L1 6278 6584 0 3 1406 283 200 0 0 chr6 107718647 107718707 -41798330 + L1_Mur3 LINE L1 5322 5381 -499 3 1406 1164 51 0 0 chr6 107719869 107720007 -41797030 - B1_Mus1 SINE Alu -9 139 2 3 1406 486 0 0 0 chr6 107720268 107720322 -41796715 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1406 346 329 85 27 chr6 107720419 107720678 -41796359 - B4A SINE B4 -18 274 1 3 1406 21 36 0 0 chr6 107721403 107721431 -41795606 + AT_rich Low_complexity Low_complexity 1 28 0 3 1406 261 281 47 0 chr6 107721616 107721680 -41795357 - MIRb SINE MIR -43 225 159 3 1406 346 315 66 33 chr6 107722012 107722163 -41794874 - LTR33 LTR ERVL -333 182 27 3 1406 783 271 43 19 chr6 107722829 107723040 -41793997 + B3 SINE B2 1 216 0 3 1406 396 261 26 84 chr6 107723382 107723537 -41793500 - Charlie5 DNA MER1_type 0 2624 2479 3 1406 191 188 0 20 chr6 107723763 107723812 -41793225 + (CATA)n Simple_repeat Simple_repeat 3 50 0 3 1406 1063 310 84 63 chr6 107723867 107724391 -41792646 + MER45B DNA Tip100 1 535 -505 3 1406 2660 81 31 8 chr6 107724416 107724800 -41792237 + L1_Mus4 LINE L1 6235 6627 -9 3 1406 523 83 37 9 chr6 107724800 107724909 -41792128 + (TA)n Simple_repeat Simple_repeat 2 113 0 3 1406 214 338 63 36 chr6 107725258 107725404 -41791633 + MIR3 SINE MIR 38 172 -36 3 1406 396 301 146 71 chr6 107726173 107726427 -41790610 - B4 SINE B4 -19 273 1 3 1406 263 321 59 38 chr6 107726532 107726748 -41790289 + MIRb SINE MIR 3 229 -39 3 1406 356 323 85 0 chr6 107726897 107727027 -41790010 + B1F1 SINE Alu 3 143 -6 3 1406 363 288 112 0 chr6 107727058 107727183 -41789854 + B1F SINE Alu 1 139 -10 3 1406 3060 130 57 16 chr6 107727256 107728004 -41789033 - Lx3C LINE L1 -765 6211 5431 3 1406 731 148 0 8 chr6 107728000 107728123 -41788914 + Lx3C LINE L1 6325 6446 -530 3 1406 3158 30 5 44 chr6 107728123 107728314 -41788723 + MTA_Mm LTR MaLR 1 191 -205 3 1406 3888 60 2 0 chr6 107728314 107728801 -41788236 + L1Md_F2 LINE L1 6094 6581 -1 3 1406 3158 30 5 44 chr6 107728801 107729021 -41788016 + MTA_Mm LTR MaLR 192 396 0 3 1406 2070 181 2 15 chr6 107729021 107729425 -41787612 + Lx3C LINE L1 6442 6840 -136 3 1406 1968 147 81 27 chr6 107729588 107729980 -41787057 + RMER10A LTR ERVL 1 416 -26 3 1406 1140 111 0 0 chr6 107729980 107730160 -41786877 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 3 1406 1968 147 81 27 chr6 107730160 107730173 -41786864 + RMER10A LTR ERVL 417 428 -14 3 1406 23 0 0 0 chr6 107730262 107730285 -41786752 + AT_rich Low_complexity Low_complexity 1 23 0 3 1406 394 341 73 23 chr6 107730295 107730514 -41786523 + MLT2C1 LTR ERVL 3 232 -165 3 1406 281 252 26 9 chr6 107730831 107730947 -41786090 + L1MC4 LINE L1 7924 8041 -1 3 1406 907 292 0 5 chr6 107730968 107731178 -41785859 - B3 SINE B2 0 216 8 3 1406 291 175 0 0 chr6 107731499 107731556 -41785481 + GA-rich Low_complexity Low_complexity 2 58 0 3 1406 222 313 109 63 chr6 107733250 107733424 -41783613 + MIRc SINE MIR 2 183 -85 3 1406 257 101 40 92 chr6 107733464 107733540 -41783497 + T-rich Low_complexity Low_complexity 5 76 0 3 1406 702 217 138 0 chr6 107733592 107733744 -41783293 + B3 SINE B2 3 175 -41 3 1406 203 194 0 0 chr6 107734934 107734970 -41782067 + A-rich Low_complexity Low_complexity 1 36 0 3 1406 258 106 0 0 chr6 107734999 107735046 -41781991 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 3 1406 299 191 63 0 chr6 107735092 107735155 -41781882 + MIR SINE MIR 85 151 -57 3 1406 369 271 128 19 chr6 107735197 107735343 -41781694 + MIRm SINE MIR 29 184 -84 3 1406 21 36 0 0 chr6 107735909 107735937 -41781100 + AT_rich Low_complexity Low_complexity 1 28 0 3 1406 469 266 61 122 chr6 107735939 107736136 -41780901 + B3A SINE B2 2 186 -9 3 1406 356 200 81 116 chr6 107736091 107736193 -41780844 - Charlie1 DNA MER1_type -114 2667 2557 3 1406 561 261 42 0 chr6 107736193 107736335 -41780702 + B1_Mur1 SINE Alu 1 148 -1 3 1406 356 200 81 116 chr6 107736335 107736430 -41780607 - Charlie1 DNA MER1_type -225 2556 2477 3 1406 355 115 0 0 chr6 107736941 107736993 -41780044 - HAL1-3A_ME LINE L1 -831 2027 1976 3 1406 348 24 0 0 chr6 107738071 107738112 -41778925 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1406 3961 202 24 104 chr6 107738112 107739211 -41777826 + RMER1B Other Other 54 1064 -2 3 1406 224 59 29 0 chr6 107739496 107739530 -41777507 + (TAA)n Simple_repeat Simple_repeat 3 37 0 3 1406 457 243 6 0 chr6 107740330 107740442 -41776595 + BC1_Mm scRNA scRNA 5 118 -34 3 1406 547 344 31 10 chr6 107740606 107740800 -41776237 + B3A SINE B2 1 198 0 3 175 1012 264 63 22 chr6 107741099 107741463 -41775574 - MTE2b LTR MaLR 0 379 1 3 1407 180 0 0 0 chr6 107741844 107741864 -41775173 + (TAAG)n Simple_repeat Simple_repeat 4 23 0 3 1407 1511 241 77 19 chr6 107741883 107742297 -41774740 + BGLII_B LTR ERVK 4 441 0 3 1407 559 355 64 0 chr6 107743666 107743838 -41773199 - B4 SINE B4 -2 290 108 3 1407 480 35 0 0 chr6 107745631 107745689 -41771348 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1407 243 0 0 0 chr6 107745716 107745743 -41771294 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1407 3412 61 7 11 chr6 107746964 107747414 -41769623 + L1Md_F2 LINE L1 6133 6580 -2 3 1407 1152 118 158 5 chr6 107747423 107747619 -41769418 + URR1A DNA MER1_type 1 226 0 3 1407 246 353 45 0 chr6 107748145 107748301 -41768736 + L1MA6 LINE L1 5961 6123 -177 3 1407 250 266 89 0 chr6 107748306 107748385 -41768652 + LTR33 LTR ERVL 430 515 0 3 1407 309 225 133 53 chr6 107748523 107748598 -41768439 + PB1D10 SINE Alu 46 127 0 3 1407 327 312 0 0 chr6 107750841 107750921 -41766116 + ID4_ SINE ID 2 81 -2 3 1407 284 246 0 0 chr6 107752094 107752159 -41764878 - B3A SINE B2 -132 66 2 4 1407 233 196 0 21 chr6 107752826 107752873 -41764164 - ORR1D2 LTR MaLR -44 326 281 4 1407 397 178 31 25 chr6 107753034 107753195 -41763842 + (CAGAGA)n Simple_repeat Simple_repeat 3 164 0 4 1407 750 69 0 0 chr6 107753206 107753307 -41763730 + (GA)n Simple_repeat Simple_repeat 2 102 0 4 1407 3641 269 109 19 chr6 107753866 107754819 -41762218 - MTE-int LTR MaLR 0 1580 549 4 1407 1031 201 53 14 chr6 107754819 107755026 -41762011 - B3 SINE B2 0 216 2 4 1407 1851 266 41 44 chr6 107755026 107755557 -41761480 - MTE-int LTR MaLR -1032 548 12 4 1407 200 86 29 0 chr6 107755566 107755601 -41761436 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 1407 999 117 14 0 chr6 107755601 107755746 -41761291 - B1_Mus1 SINE Alu 0 148 2 4 1407 496 248 8 39 chr6 107755765 107755895 -41761142 - MTEb LTR MaLR -2 377 252 4 1407 4107 107 14 3 chr6 107755902 107756548 -41760489 - L1_Mus3 LINE L1 -542 5341 4689 4 1407 7196 83 10 5 chr6 107756538 107757827 -41759210 + L1_Mus3 LINE L1 5341 6633 -5 4 1407 914 261 63 51 chr6 107757833 107757908 -41759129 - MTEb LTR MaLR -122 257 182 4 1407 216 0 0 0 chr6 107757908 107757932 -41759105 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1407 874 158 0 21 chr6 107757932 107758074 -41758963 - B1_Mur3 SINE Alu -9 140 2 4 1407 914 261 63 51 chr6 107758074 107758251 -41758786 - MTEb LTR MaLR -198 181 2 4 1407 467 307 57 53 chr6 107758447 107758674 -41758363 - MIRc SINE MIR -39 229 2 4 1407 27 0 0 0 chr6 107759335 107759362 -41757675 + AT_rich Low_complexity Low_complexity 1 27 0 4 1407 1567 57 0 23 chr6 107760201 107760416 -41756621 + L1Md_F2 LINE L1 6372 6581 -1 4 1407 264 149 0 0 chr6 107760464 107760511 -41756526 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1407 1466 103 8 4 chr6 107760712 107760946 -41756091 + L1_Mm LINE L1 5252 5486 -397 4 1407 1072 84 18 12 chr6 107760946 107761114 -41755923 + L1_Mus3 LINE L1 6470 6638 0 4 1407 654 13 0 0 chr6 107761131 107761206 -41755831 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 4 1407 692 54 0 11 chr6 107761289 107761383 -41755654 + (TTCTC)n Simple_repeat Simple_repeat 5 97 0 4 1407 354 156 0 0 chr6 107761440 107761504 -41755533 + A-rich Low_complexity Low_complexity 2 65 0 4 1407 8257 20 0 0 chr6 107761611 107762658 -41754379 - L1Md_T LINE L1 0 6582 5536 4 1407 2370 296 77 25 chr6 107762711 107763764 -41753273 - Lx8 LINE L1 -145 7328 6221 4 1407 242 359 27 53 chr6 107763775 107763925 -41753112 + L2c LINE L2 3242 3387 0 4 1407 1186 90 6 6 chr6 107765044 107765223 -41751814 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 4 1407 993 122 0 0 chr6 107765884 107766023 -41751014 + B1_Mus1 SINE Alu 2 140 -8 4 1407 432 0 0 0 chr6 107766026 107766074 -41750963 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1407 13236 158 37 68 chr6 107766142 107769538 -41747499 + L1Md_A LINE L1 585 3844 -2039 4 1407 7808 51 3 1 chr6 107769538 107770519 -41746518 + L1Md_F3 LINE L1 5587 6569 -15 4 1407 13236 175 47 87 chr6 107770519 107772306 -41744731 + L1Md_A LINE L1 3845 5586 -297 4 1407 8474 29 1 0 chr6 107772306 107773301 -41743736 + L1Md_A LINE L1 5587 6582 0 4 1407 1083 64 0 0 chr6 107773333 107773473 -41743564 + L1Md_F2 LINE L1 5447 5586 -297 4 1407 7673 56 12 9 chr6 107773473 107774464 -41742573 + L1Md_F2 LINE L1 5587 6580 -2 4 1407 1925 222 70 4 chr6 107775045 107775516 -41741521 - Lx2B LINE L1 -20 6980 6479 4 1407 1337 118 0 0 chr6 107775513 107775717 -41741320 + Lx2B LINE L1 5674 5877 -1123 4 1407 537 105 46 28 chr6 107775715 107775823 -41741214 + Lx2B LINE L1 6373 6482 -515 4 1407 284 286 60 0 chr6 107776198 107776282 -41740755 + MER3 DNA MER1_type 32 120 -89 4 1407 1281 35 6 39 chr6 107776391 107776569 -41740468 - IAPEY2_LTR LTR ERVK 0 357 186 4 1407 557 277 97 35 chr6 107777743 107777971 -41739066 + RMER5 LTR ERV1 33 274 -260 4 1407 2193 156 7 69 chr6 107777971 107778391 -41738646 - ORR1B1 LTR MaLR 0 394 1 4 1407 973 288 47 29 chr6 107778422 107778701 -41738336 - MTEa LTR MaLR 0 379 96 4 1407 227 264 108 72 chr6 107778736 107778875 -41738162 + RMER15 LTR ERVL 15 158 -417 4 1407 509 275 297 18 chr6 107778894 107779116 -41737921 + RMER15 LTR ERVL 292 575 0 4 1407 257 182 99 49 chr6 107779116 107779176 -41737861 - MTEa LTR MaLR -311 68 5 4 1407 595 272 86 36 chr6 107779180 107779401 -41737636 + RMER5 LTR ERV1 296 527 -7 4 1407 22 35 0 0 chr6 107779577 107779606 -41737431 + AT_rich Low_complexity Low_complexity 1 29 0 4 1407 26 0 0 0 chr6 107779668 107779694 -41737343 + AT_rich Low_complexity Low_complexity 1 26 0 4 1407 496 357 27 0 chr6 107779708 107779932 -41737105 + ERVL-B4-int LTR ERVL 446 675 -5039 4 1407 30698 82 23 18 chr6 107780467 107784238 -41732799 + L1Md_F LINE L1 436 4196 -1687 4 1407 198 0 0 0 chr6 107784238 107784260 -41732777 + (TA)n Simple_repeat Simple_repeat 1 22 0 4 1407 30698 72 12 2 chr6 107784260 107785602 -41731435 + L1Md_F LINE L1 4197 5585 -298 4 1407 8072 48 4 2 chr6 107785602 107786595 -41730442 + L1Md_F2 LINE L1 5587 6581 -1 4 1407 30698 72 12 2 chr6 107786595 107786639 -41730398 + L1Md_F LINE L1 5586 5626 -257 4 1407 622 231 12 0 chr6 107786806 107786975 -41730062 + (TA)n Simple_repeat Simple_repeat 2 172 0 4 1407 2933 93 8 0 chr6 107787485 107787882 -41729155 + MTB LTR MaLR 1 400 0 4 1407 8292 107 40 7 chr6 107788065 107789469 -41727568 - Lx3B LINE L1 -5 6968 5522 4 1407 28 86 0 0 chr6 107789625 107789695 -41727342 + AT_rich Low_complexity Low_complexity 1 70 0 4 1407 3530 181 146 20 chr6 107789731 107790627 -41726410 - Lx9 LINE L1 -1 7643 6635 4 1407 615 211 139 17 chr6 107790625 107790921 -41726116 + Lx9 LINE L1 5734 6123 -1521 4 1407 873 219 11 0 chr6 107790978 107791161 -41725876 + Lx9 LINE L1 6306 6490 -1154 4 1407 14342 151 45 22 chr6 107791419 107792858 -41724179 + Lx2B LINE L1 2919 4418 -1459 4 1407 4143 70 0 2 chr6 107792858 107793386 -41723651 + L1_Mus1 LINE L1 6040 6566 -1 4 1407 14342 157 43 22 chr6 107793386 107795930 -41721107 + Lx2B LINE L1 4419 6997 -3 4 1407 683 306 74 81 chr6 107796306 107796590 -41720447 + B4A SINE B4 11 292 0 4 1407 295 311 11 43 chr6 107796600 107796785 -41720252 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1407 23 33 0 0 chr6 107797797 107797827 -41719210 + AT_rich Low_complexity Low_complexity 1 30 0 4 1407 275 206 103 9 chr6 107798009 107798114 -41718923 - Lx6 LINE L1 -2 7458 7361 4 1407 628 45 11 11 chr6 107798119 107798208 -41718829 + (TTTC)n Simple_repeat Simple_repeat 1 89 0 4 1407 493 311 175 20 chr6 107799534 107799780 -41717257 + B4A SINE B4 3 286 -6 4 1407 209 269 72 60 chr6 107800187 107800270 -41716767 + L2b LINE L2 3292 3375 0 4 1407 303 140 0 0 chr6 107800447 107800497 -41716540 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1407 654 101 0 0 chr6 107800497 107800606 -41716431 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 1407 286 316 95 65 chr6 107800664 107800833 -41716204 - RLTR42 LTR ERVK 0 239 66 4 1407 204 283 8 85 chr6 107801936 107802039 -41714998 - MIRm SINE MIR -118 158 60 4 1407 393 305 41 51 chr6 107802879 107803076 -41713961 - MamRep137 DNA TcMar? -232 212 18 4 1407 783 283 16 0 chr6 107803252 107803439 -41713598 + ORR1D2 LTR MaLR 1 190 -180 4 1407 4404 57 10 22 chr6 107803588 107804165 -41712872 + L1Md_F2 LINE L1 6013 6582 0 4 1407 1333 264 88 34 chr6 107804513 107804689 -41712348 + MTD LTR MaLR 1 190 -229 4 1407 957 157 139 20 chr6 107804689 107804891 -41712146 - URR1A DNA MER1_type 0 226 1 4 1407 1333 264 88 34 chr6 107804891 107805098 -41711939 + MTD LTR MaLR 191 405 -14 4 1407 611 223 118 10 chr6 107805337 107805532 -41711505 + B3 SINE B2 1 216 0 4 1407 189 0 0 0 chr6 107805566 107805587 -41711450 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 1407 719 214 19 0 chr6 107805587 107805746 -41711291 + Lx7 LINE L1 5606 5767 -1929 4 1407 536 346 36 30 chr6 107805747 107806048 -41710989 + RLTR12B LTR ERVK 1 303 -225 4 1407 569 245 13 19 chr6 107806155 107806313 -41710724 + Lx9 LINE L1 5761 5917 -1727 4 1407 31439 79 2 15 chr6 107806485 107811659 -41705378 + L1Md_F2 LINE L1 484 5585 -298 4 1407 7880 52 9 2 chr6 107811660 107812649 -41704388 + L1Md_F2 LINE L1 5587 6582 0 4 1407 675 235 33 16 chr6 107813741 107813923 -41703114 - Lx8 LINE L1 -1086 6387 6203 4 1407 297 75 0 0 chr6 107814365 107814405 -41702632 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 4 1407 287 176 0 11 chr6 107815526 107815618 -41701419 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 4 1407 835 291 22 4 chr6 107815620 107815848 -41701189 + B4A SINE B4 4 235 -57 4 1407 15087 102 25 17 chr6 107815850 107818577 -41698460 + L1Md_F LINE L1 238 2968 -2915 4 1407 1041 116 0 12 chr6 107818577 107818743 -41698294 - L1Md_F2 LINE L1 -12 6570 6407 4 1407 15087 75 2 20 chr6 107818743 107819238 -41697799 + L1Md_F LINE L1 2969 3461 -2422 4 1407 1037 24 0 0 chr6 107819233 107819358 -41697679 + L1Md_T LINE L1 5462 5586 -297 4 1407 8381 28 6 6 chr6 107819358 107820354 -41696683 + L1Md_T LINE L1 5587 6582 0 4 1407 2036 108 3 0 chr6 107820353 107820650 -41696387 + L1_Mus1 LINE L1 6266 6563 -4 4 1407 189 0 0 0 chr6 107820699 107820720 -41696317 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1407 215 253 11 0 chr6 107820763 107820858 -41696179 + (CATA)n Simple_repeat Simple_repeat 3 98 0 4 1407 205 184 0 0 chr6 107820874 107820912 -41696125 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 4 1407 311 277 0 0 chr6 107820975 107821040 -41695997 + tRNA-Ala-GCA tRNA tRNA 2 66 -9 4 1407 300 98 0 0 chr6 107822067 107822108 -41694929 + U2 snRNA snRNA 1 41 -147 4 1407 710 231 142 6 chr6 107822575 107822758 -41694279 - B3 SINE B2 -7 209 2 4 1407 666 313 24 0 chr6 107823311 107823522 -41693515 + B3 SINE B2 1 216 0 4 1407 207 310 130 15 chr6 107824335 107824466 -41692571 - MIRb SINE MIR -122 146 1 4 1407 1178 134 124 0 chr6 107825465 107825666 -41691371 + URR1A DNA MER1_type 1 226 0 4 1407 25 31 0 0 chr6 107825670 107825702 -41691335 + AT_rich Low_complexity Low_complexity 1 32 0 4 1407 1370 163 92 4 chr6 107826041 107826312 -41690725 + Lx4A LINE L1 6761 7055 -3 4 1407 600 286 30 43 chr6 107826652 107826898 -41690139 + B4A SINE B4 36 284 -8 4 1407 1221 274 35 61 chr6 107826940 107827286 -41689751 - MTEb LTR MaLR -42 337 1 4 1407 318 277 19 25 chr6 107827866 107828025 -41689012 + L1MA8 LINE L1 4587 4744 -1399 4 1407 1735 221 58 7 chr6 107828026 107828477 -41688560 + Lx4B LINE L1 6578 7051 -7 4 1407 975 278 92 14 chr6 107828485 107829412 -41687625 + L1MA8 LINE L1 4732 5743 -569 4 1407 288 294 0 0 chr6 107829477 107829545 -41687492 + tRNA-Asp-GAY tRNA tRNA 2 69 -6 4 1407 570 316 0 62 chr6 107829566 107829775 -41687262 + B3A SINE B2 3 198 0 4 1407 668 237 230 3 chr6 107829823 107830162 -41686875 + L1MA8 LINE L1 5852 6267 -24 4 1407 771 213 0 0 chr6 107830176 107830312 -41686725 - B1_Mus2 SINE Alu -9 138 3 4 1407 1187 62 7 0 chr6 107830335 107830481 -41686556 - B1_Mus1 SINE Alu -1 147 1 5 1407 370 356 22 15 chr6 107830530 107830667 -41686370 + MLT1C LTR MaLR 330 467 0 5 1407 35743 44 6 3 chr6 107831699 107836917 -41680120 + L1Md_T LINE L1 262 5589 -297 5 1407 8906 37 0 0 chr6 107836917 107837911 -41679126 + L1Md_T LINE L1 5590 6583 -2 5 1407 5572 51 40 1 chr6 107837918 107838590 -41678447 + L1_Mus1 LINE L1 5862 6559 -8 5 1407 534 103 0 22 chr6 107838588 107838677 -41678360 + L1Md_F3 LINE L1 6498 6584 0 5 1407 551 361 37 0 chr6 107839916 107840132 -41676905 + MER58A DNA MER1_type 1 224 0 5 1407 446 264 93 0 chr6 107840153 107840282 -41676755 - MER5A DNA MER1_type 0 189 49 5 1407 707 314 84 20 chr6 107840458 107840708 -41676329 - B4A SINE B4 -22 270 5 5 1407 238 316 17 26 chr6 107840800 107840917 -41676120 + L1MC LINE L1 4802 4917 -1229 5 1407 575 39 13 0 chr6 107841281 107841359 -41675678 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1407 3971 144 28 43 chr6 107842521 107843189 -41673848 + Lx2B LINE L1 6341 6998 -2 5 1407 21 0 0 0 chr6 107843787 107843808 -41673229 + AT_rich Low_complexity Low_complexity 1 21 0 5 1407 833 163 35 46 chr6 107845738 107845912 -41671125 + B2_Mm2 SINE B2 1 172 -23 5 1407 744 149 37 0 chr6 107845912 107846073 -41670964 + GA-rich Low_complexity Low_complexity 4 170 0 5 1407 21 36 0 0 chr6 107846494 107846522 -41670515 + AT_rich Low_complexity Low_complexity 1 28 0 5 1407 532 245 75 0 chr6 107847005 107847111 -41669926 - B1F SINE Alu -35 114 1 5 1407 327 261 0 0 chr6 107847326 107847395 -41669642 + Lx7 LINE L1 7127 7195 -501 5 1407 261 244 99 70 chr6 107847524 107847696 -41669341 + Lx7 LINE L1 7520 7696 0 5 1407 331 362 20 80 chr6 107847830 107847980 -41669057 + B1F SINE Alu 1 141 -8 5 1407 2124 177 25 33 chr6 107848186 107848578 -41668459 + ORR1B1 LTR MaLR 1 389 -5 5 1407 285 394 23 8 chr6 107848651 107848779 -41668258 - MamRep137 DNA TcMar? -7 437 308 5 1407 240 301 0 0 chr6 107848918 107848991 -41668046 - Lx8 LINE L1 -1031 6442 6370 5 1407 2321 337 37 24 chr6 107848992 107849984 -41667053 + Lx8 LINE L1 6469 7473 0 5 1407 208 171 41 41 chr6 107850812 107850885 -41666152 + (TTATA)n Simple_repeat Simple_repeat 2 74 0 5 1407 4414 195 84 37 chr6 107850980 107851954 -41665083 + RMER1B Other Other 45 1064 -2 5 1407 354 23 0 0 chr6 107852108 107852151 -41664886 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1407 219 36 0 0 chr6 107852645 107852673 -41664364 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1407 946 24 16 0 chr6 107852673 107852797 -41664240 + (GA)n Simple_repeat Simple_repeat 1 127 0 5 1407 342 0 0 0 chr6 107852797 107852834 -41664203 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1407 275 358 28 0 chr6 107852957 107853066 -41663971 + Lx8 LINE L1 7101 7212 -261 5 1407 327 274 0 54 chr6 107853179 107853291 -41663746 - L1MC1 LINE L1 -20 6313 6208 5 1407 36880 35 6 9 chr6 107853600 107858795 -41658242 + L1Md_A LINE L1 416 5586 -297 5 1407 8711 47 2 0 chr6 107858795 107859788 -41657249 + L1Md_T LINE L1 5587 6581 -1 5 1407 183 289 79 40 chr6 107861177 107861278 -41655759 - L2c LINE L2 -30 3357 3253 5 1407 200 341 175 20 chr6 107861572 107861823 -41655214 - L2c LINE L2 -378 3041 2752 5 1407 1037 188 90 15 chr6 107861906 107862218 -41654819 - ORR1D1 LTR MaLR -2 376 6 5 1407 862 240 18 119 chr6 107862919 107863146 -41653891 + B3 SINE B2 9 212 -4 5 1407 258 325 52 0 chr6 107863230 107863307 -41653730 - L4 LINE RTE -1335 694 614 5 1407 2428 159 44 0 chr6 107863361 107863751 -41653286 - MTC LTR MaLR -14 407 1 5 1407 509 332 68 68 chr6 107863751 107864001 -41653036 + B4A SINE B4 21 270 -22 5 1407 38855 44 0 3 chr6 107864132 107870561 -41646476 - L1Md_T LINE L1 -1 6584 75 5 1407 1080 258 0 0 chr6 107870834 107871043 -41645994 - B3 SINE B2 -7 209 1 5 175 567 296 63 123 chr6 107872114 107872464 -41644573 + MER76 LTR ERVL 328 656 -35 5 1408 1753 31 0 0 chr6 107873289 107873481 -41643556 - B2_Mm1t SINE B2 0 193 2 5 1408 637 284 146 21 chr6 107874361 107874892 -41642145 - L1MB8 LINE L1 -22 6157 5534 5 1408 423 0 0 0 chr6 107874964 107875011 -41642026 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1408 297 0 0 0 chr6 107875011 107875043 -41641994 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1408 383 227 0 0 chr6 107875046 107875112 -41641925 - ID4_ SINE ID -16 67 2 5 1408 6238 143 43 21 chr6 107875284 107875619 -41641418 + Lx2 LINE L1 5963 6299 -698 5 1408 2251 145 19 19 chr6 107875619 107875984 -41641053 + RLTR8 LTR ERVK 1 365 0 5 1408 6238 143 43 21 chr6 107875984 107876660 -41640377 + Lx2 LINE L1 6300 6997 0 5 1408 922 262 92 114 chr6 107876874 107877383 -41639654 + Lx8 LINE L1 6823 7320 -153 5 1408 306 274 48 57 chr6 107877890 107878014 -41639023 - MTEb LTR MaLR -20 359 237 5 1408 3722 123 112 6 chr6 107878305 107878929 -41638108 + RMER6C LTR ERVK 1 690 0 5 1408 280 305 9 45 chr6 107878939 107879049 -41637988 - MTEb LTR MaLR -211 148 43 5 1408 423 0 0 0 chr6 107879156 107879203 -41637834 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1408 24 0 0 0 chr6 107879697 107879721 -41637316 + AT_rich Low_complexity Low_complexity 1 24 0 5 1408 330 26 0 0 chr6 107879721 107879760 -41637277 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1408 308 364 0 108 chr6 107879768 107879879 -41637158 + PB1D10 SINE Alu 4 102 -15 5 1408 1071 228 5 23 chr6 107879896 107880112 -41636925 + B3 SINE B2 1 212 -4 5 1408 390 255 121 30 chr6 107880120 107880286 -41636751 + MLT1B LTR MaLR 165 345 -45 5 1408 1234 69 7 0 chr6 107880310 107880455 -41636582 + B1_Mus1 SINE Alu 2 147 -1 5 1408 30 27 0 0 chr6 107880456 107880493 -41636544 + AT_rich Low_complexity Low_complexity 1 37 0 5 1408 207 114 0 0 chr6 107880502 107880537 -41636500 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 1408 194 227 58 43 chr6 107881889 107881958 -41635079 + MER5A DNA MER1_type 38 107 -82 5 1408 230 308 0 0 chr6 107882136 107882188 -41634849 + B4A SINE B4 86 137 -155 5 1408 241 233 27 27 chr6 107882827 107882902 -41634135 + CT-rich Low_complexity Low_complexity 3 77 0 5 1408 192 351 23 38 chr6 107883000 107883133 -41633904 + MIR3 SINE MIR 37 167 -41 5 1408 270 203 167 17 chr6 107885030 107885150 -41631887 - MIR3 SINE MIR -1 207 70 5 1408 227 315 0 136 chr6 107885640 107885787 -41631250 + MIR3 SINE MIR 11 137 -71 5 1408 216 135 0 0 chr6 107885819 107885856 -41631181 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1408 907 161 34 40 chr6 107886664 107886839 -41630198 + ORR1B2 LTR MaLR 1 174 -193 5 1408 1570 249 83 24 chr6 107886844 107887304 -41629733 + RLTR16 LTR ERVK 1 487 -18 5 1408 708 130 226 0 chr6 107887476 107887622 -41629415 + ORR1B2 LTR MaLR 181 359 -8 5 1408 221 377 57 0 chr6 107888901 107889007 -41628030 - L2b LINE L2 0 3375 3264 5 1408 4354 40 0 0 chr6 107890008 107890526 -41626511 - L1Md_F2 LINE L1 -1 6581 6064 5 1408 300 318 94 56 chr6 107891404 107891584 -41625453 + MIRb SINE MIR 82 268 0 5 1408 1243 334 53 36 chr6 107892312 107892818 -41624219 - MER21B LTR ERV1 -296 567 53 5 1408 260 27 0 26 chr6 107894861 107894899 -41622138 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1408 1136 66 0 0 chr6 107894899 107895036 -41622001 - B1_Mm SINE Alu -10 137 1 5 1408 37826 33 3 7 chr6 107895070 107901677 -41615360 - L1Md_T LINE L1 0 6582 1 5 1408 291 54 0 0 chr6 107903402 107903439 -41613598 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1408 20386 137 4 67 chr6 107903463 107907276 -41609761 - L1_Mus1 LINE L1 0 6567 3351 5 1408 838 144 38 0 chr6 107907276 107907408 -41609629 - B1_Mus2 SINE Alu -10 137 1 5 1408 20386 105 3 33 chr6 107907408 107909819 -41607218 - L1_Mus1 LINE L1 -2533 3350 1009 5 1408 592 84 0 0 chr6 107909817 107909912 -41607125 - MusHAL1 LINE L1 -2396 316 222 5 1408 7325 101 17 5 chr6 107909921 107911856 -41605181 + L1_Mus3 LINE L1 4670 6632 -6 5 1408 1978 149 31 26 chr6 107912382 107912734 -41604303 - ORR1B1 LTR MaLR 0 394 41 5 1408 252 324 0 0 chr6 107912878 107912952 -41604085 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1408 518 268 69 29 chr6 107912959 107913163 -41603874 - L1MC1 LINE L1 -15 6318 6107 5 1408 3915 140 116 20 chr6 107913163 107913853 -41603184 + RMER6A LTR ERVK 1 756 0 5 1408 1248 300 95 38 chr6 107913853 107914654 -41602383 - L1MC2 LINE L1 -228 6116 5270 5 1408 264 222 0 0 chr6 107914680 107914734 -41602303 + B1_Mur1 SINE Alu 76 129 -20 5 1408 386 275 144 7 chr6 107914761 107915032 -41602005 - L1MC2 LINE L1 -864 5282 4975 5 1408 235 383 93 0 chr6 107915877 107916039 -41600998 + MIRc SINE MIR 45 221 -47 5 1408 380 77 0 0 chr6 107916617 107916669 -41600368 + BGLII LTR ERVK 3 54 -367 5 1408 1553 76 36 0 chr6 107916694 107916919 -41600118 + BGLII LTR ERVK 185 417 -4 5 1408 1359 159 115 10 chr6 107916920 107917224 -41599813 + Lx9 LINE L1 7008 7343 -301 5 1408 678 130 0 22 chr6 107917257 107917391 -41599646 + Lx9 LINE L1 7514 7644 0 5 1408 28 48 0 0 chr6 107917391 107917433 -41599604 + AT_rich Low_complexity Low_complexity 1 42 0 5 1408 1029 191 108 101 chr6 107917437 107917834 -41599203 + Lx2B LINE L1 6596 6995 -5 5 1408 367 189 19 39 chr6 107917803 107917957 -41599080 + Lx9 LINE L1 7493 7643 -1 5 1408 24 0 0 0 chr6 107917957 107917981 -41599056 + AT_rich Low_complexity Low_complexity 1 24 0 5 1408 22 56 0 0 chr6 107918041 107918077 -41598960 + AT_rich Low_complexity Low_complexity 1 36 0 5 1408 389 302 172 111 chr6 107918212 107918600 -41598437 + MT2A LTR ERVL 1 427 -127 5 1408 198 0 0 0 chr6 107918600 107918622 -41598415 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5 1408 389 302 172 111 chr6 107918622 107918755 -41598282 + MT2A LTR ERVL 393 554 0 5 1408 6889 170 45 41 chr6 107919710 107921007 -41596030 - Lx5 LINE L1 -9 7041 5737 5 1408 1230 41 0 0 chr6 107921007 107921152 -41595885 - B1_Mus2 SINE Alu 0 147 3 5 1408 6889 172 38 65 chr6 107921152 107921357 -41595680 - Lx5 LINE L1 -1314 5736 5551 5 1408 3862 110 188 6 chr6 107921357 107921981 -41595056 + RMER19A LTR ERVK 1 737 0 5 1408 1754 178 17 131 chr6 107921981 107922086 -41594951 - Lx5 LINE L1 -327 5550 5446 5 1408 2422 208 39 6 chr6 107922111 107922647 -41594390 - Lx5 LINE L1 -4 7046 6493 5 1408 5917 139 25 3 chr6 107922643 107923693 -41593344 - Lx5 LINE L1 -441 5436 4364 5 1408 3580 72 43 30 chr6 107923693 107924225 -41592812 + RLTR13A LTR ERVK 1 539 -316 6 1408 24 0 0 0 chr6 107924225 107924249 -41592788 + AT_rich Low_complexity Low_complexity 1 24 0 6 1408 8609 2 0 0 chr6 107924249 107925936 -41591101 - L1Md_A LINE L1 -2 6580 4894 6 1408 234 132 26 0 chr6 107925933 107925971 -41591066 + L1_Mus1 LINE L1 5807 5845 -722 6 1408 1964 156 18 18 chr6 107925971 107926355 -41590682 - Lx5 LINE L1 -1541 4336 3953 5 1408 270 0 0 0 chr6 107926712 107926742 -41590295 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1408 982 155 8 4 chr6 107928318 107928574 -41588463 + GA-rich Low_complexity Low_complexity 1 256 0 6 1408 1473 39 0 0 chr6 107928575 107928755 -41588282 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1408 213 39 0 0 chr6 107929827 107929853 -41587184 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1408 24 0 0 0 chr6 107929897 107929921 -41587116 + AT_rich Low_complexity Low_complexity 1 24 0 6 1408 2752 166 11 9 chr6 107930024 107930684 -41586353 + L1VL4 LINE L1 578 1247 -5313 6 1408 3263 86 0 20 chr6 107930694 107931183 -41585854 + L1_Mm LINE L1 4836 5314 -569 6 1408 4188 82 7 2 chr6 107931183 107931743 -41585294 + L1_Mus2 LINE L1 6004 6566 0 6 1408 2726 105 52 0 chr6 107931807 107932208 -41584829 + L1_Mus3 LINE L1 6211 6632 -6 6 1408 495 0 0 0 chr6 107932279 107932334 -41584703 + (CATA)n Simple_repeat Simple_repeat 2 56 0 6 1408 227 333 115 18 chr6 107933067 107933232 -41583805 + RMER1B Other Other 60 240 -826 6 1408 359 169 127 0 chr6 107933230 107933301 -41583736 + RMER1B Other Other 363 442 -624 6 1408 2793 281 54 29 chr6 107933452 107935064 -41581973 + Lx8 LINE L1 5292 6904 -569 6 1408 262 277 243 5 chr6 107935056 107935241 -41581796 + Lx8 LINE L1 7240 7468 -5 6 1408 27 49 0 0 chr6 107936384 107936425 -41580612 + AT_rich Low_complexity Low_complexity 1 41 0 6 1408 1362 220 112 0 chr6 107936711 107937016 -41580021 + ORR1D2 LTR MaLR 3 341 -29 6 1408 36566 46 12 15 chr6 107937016 107942845 -41574192 - L1Md_T LINE L1 -4 6581 734 6 1408 226 316 59 59 chr6 107942845 107942946 -41574091 - RLTR45 LTR ERVK -378 104 4 6 1408 36566 46 12 15 chr6 107942946 107943675 -41573362 - L1Md_T LINE L1 -4 733 1 6 1408 252 156 22 0 chr6 107943675 107943720 -41573317 + ORR1D2 LTR MaLR 323 368 -2 6 1408 360 284 19 19 chr6 107943722 107943826 -41573211 - MTEa LTR MaLR -23 356 253 6 1408 690 259 74 19 chr6 107944126 107944342 -41572695 - ORR1E-int LTR MaLR -3 1577 1350 6 1408 252 0 0 0 chr6 107944342 107944370 -41572667 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1408 2623 68 31 8 chr6 107944851 107945205 -41571832 + L1Md_F2 LINE L1 6202 6563 -19 6 1408 216 67 0 0 chr6 107945222 107945252 -41571785 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 1408 1289 333 134 56 chr6 107945541 107946255 -41570782 - ORR1E-int LTR MaLR -217 1363 588 6 1408 374 245 71 10 chr6 107946255 107946354 -41570683 - PB1D10 SINE Alu -10 107 3 6 1408 1289 333 134 56 chr6 107946354 107946532 -41570505 - ORR1E-int LTR MaLR -993 587 401 6 1408 468 288 96 19 chr6 107946625 107946834 -41570203 - ORR1E-int LTR MaLR -1355 225 1 6 1408 358 330 74 45 chr6 107946834 107947098 -41569939 - ORR1E LTR MaLR 0 370 89 6 1408 219 350 117 0 chr6 107947255 107947358 -41569679 + B1F SINE Alu 10 124 -25 6 1408 618 292 25 107 chr6 107947860 107948140 -41568897 + MLT1D LTR MaLR 244 500 -5 6 1408 1917 134 0 128 chr6 107948203 107948498 -41568539 + ORR1A4 LTR MaLR 3 270 -59 6 1408 2668 65 20 0 chr6 107948498 107948853 -41568184 + L1_Mus1 LINE L1 6206 6567 0 6 1408 1917 134 0 128 chr6 107948853 107948867 -41568170 + ORR1A4 LTR MaLR 271 276 -53 6 1408 180 0 0 0 chr6 107948867 107948887 -41568150 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 6 1408 1917 134 0 128 chr6 107948887 107948951 -41568086 + ORR1A4 LTR MaLR 277 329 0 6 1408 244 217 100 0 chr6 107949843 107949903 -41567134 + PB1D7 SINE Alu 46 111 -9 6 1408 252 270 43 43 chr6 107949999 107950092 -41566945 - L1M3 LINE L1 -3427 2713 2621 6 1408 892 146 22 0 chr6 107950194 107950331 -41566706 + B1_Mur4 SINE Alu 1 140 -10 6 1408 459 0 0 0 chr6 107950331 107950382 -41566655 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1408 776 237 10 31 chr6 107950586 107950778 -41566259 + B3A SINE B2 1 188 -10 6 1408 21 0 0 0 chr6 107951006 107951027 -41566010 + AT_rich Low_complexity Low_complexity 1 21 0 6 1408 539 346 84 58 chr6 107951207 107951469 -41565568 - MLT1K LTR MaLR -87 508 233 6 1408 414 0 0 0 chr6 107951469 107951515 -41565522 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1408 417 129 0 0 chr6 107951515 107951584 -41565453 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1408 539 346 84 58 chr6 107951584 107951630 -41565407 - MLT1K LTR MaLR -363 232 192 6 1408 3059 46 5 15 chr6 107951863 107952259 -41564778 - L1_Mus3 LINE L1 -1 6637 6246 6 1408 444 118 0 0 chr6 107953610 107953678 -41563359 + (CAGA)n Simple_repeat Simple_repeat 4 71 0 6 1408 504 0 0 0 chr6 107954176 107954232 -41562805 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1408 363 303 149 28 chr6 107954276 107954524 -41562513 - B4 SINE B4 -14 278 1 6 1408 201 294 14 14 chr6 107954701 107954770 -41562267 - MIRc SINE MIR -25 243 175 6 1408 273 98 0 0 chr6 107955586 107955627 -41561410 + (CAT)n Simple_repeat Simple_repeat 3 43 0 6 1408 598 259 12 0 chr6 107955627 107955785 -41561252 - Lx6 LINE L1 -34 7426 7267 6 1408 1574 203 151 0 chr6 107955888 107956252 -41560785 - MTD LTR MaLR 0 419 1 6 1408 2627 151 7 9 chr6 107956360 107956782 -41560255 + MTC LTR MaLR 1 421 0 6 1408 202 183 33 16 chr6 107956864 107956925 -41560112 + CT-rich Low_complexity Low_complexity 3 64 0 6 1408 239 312 94 54 chr6 107957075 107957224 -41559813 + RSINE1 SINE B4 2 156 -9 6 1408 255 282 69 23 chr6 107957961 107958048 -41558989 - PB1D7 SINE Alu 0 120 30 6 1408 244 321 0 58 chr6 107958099 107958185 -41558852 + ID4_ SINE ID 3 83 0 6 1408 27 0 0 0 chr6 107958232 107958259 -41558778 + AT_rich Low_complexity Low_complexity 1 27 0 6 1408 599 271 12 12 chr6 107958743 107958904 -41558133 + RSINE1 SINE B4 3 163 -2 6 1408 387 0 0 0 chr6 107958913 107958956 -41558081 + (TAA)n Simple_repeat Simple_repeat 2 44 0 6 1408 369 58 0 0 chr6 107958989 107959041 -41557996 + L1Md_F2 LINE L1 6519 6570 -12 6 1408 508 218 20 0 chr6 107959460 107959561 -41557476 - MTC LTR MaLR -2 419 317 6 1408 2897 171 19 52 chr6 107959812 107960343 -41556694 - RLTR31_Mm LTR ERVK 0 561 43 6 1408 5528 127 22 101 chr6 107960343 107961410 -41555627 - RLTR13C1 LTR ERVK 0 983 1 6 1408 2897 171 19 52 chr6 107961410 107961458 -41555579 - RLTR31_Mm LTR ERVK -519 42 1 6 1408 1210 234 106 0 chr6 107961458 107961619 -41555418 + MTD LTR MaLR 4 189 -230 6 1408 435 19 0 0 chr6 107961619 107961671 -41555366 + (GTTTG)n Simple_repeat Simple_repeat 2 53 0 6 1408 1210 234 106 0 chr6 107961671 107961783 -41555254 + MTD LTR MaLR 190 305 -114 6 1408 2259 250 105 17 chr6 107961783 107962116 -41554921 + Lx9 LINE L1 6647 7041 -603 6 1408 315 0 0 0 chr6 107962116 107962151 -41554886 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1408 2259 250 105 17 chr6 107962151 107962569 -41554468 + Lx9 LINE L1 7042 7463 -181 6 1408 336 24 0 0 chr6 107962569 107962610 -41554427 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1408 705 205 87 9 chr6 107962610 107962730 -41554307 + Lx8 LINE L1 7331 7416 -57 6 1408 27 49 0 0 chr6 107962784 107962825 -41554212 + AT_rich Low_complexity Low_complexity 1 41 0 6 1408 358 324 18 0 chr6 107963231 107963342 -41553695 - ID_B1 SINE B4 -29 195 83 6 1408 26612 114 24 17 chr6 107963453 107968665 -41548372 + L1Md_F LINE L1 215 5463 -420 6 1408 195 69 0 0 chr6 107968705 107968734 -41548303 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1408 282 316 0 0 chr6 107968742 107968821 -41548216 - ID4 SINE ID -3 80 2 6 1408 856 302 54 54 chr6 107968854 107969299 -41547738 + Charlie10 DNA MER1_type 1962 2406 -416 6 1408 308 234 63 36 chr6 107969303 107969414 -41547623 + PB1D7 SINE Alu 2 115 -5 6 1408 201 121 0 0 chr6 107969462 107969495 -41547542 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 6 1408 264 59 0 0 chr6 107970415 107970449 -41546588 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1408 267 220 34 0 chr6 107970450 107970509 -41546528 + GA-rich Low_complexity Low_complexity 1 61 0 6 1408 225 242 39 29 chr6 107970572 107970674 -41546363 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 6 1408 1169 216 126 11 chr6 107970711 107970973 -41546064 + B4 SINE B4 1 292 0 6 1408 357 125 0 0 chr6 107970974 107971030 -41546007 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1408 1023 92 0 28 chr6 107971152 107971297 -41545740 + B1_Mus2 SINE Alu 1 141 -6 6 1408 744 94 0 0 chr6 107971301 107971407 -41545630 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 6 1408 1982 226 131 52 chr6 107972313 107972910 -41544127 + Lx6 LINE L1 6791 7434 -26 6 1408 31 44 0 0 chr6 107972966 107973011 -41544026 + AT_rich Low_complexity Low_complexity 1 45 0 6 1408 509 253 74 79 chr6 107973125 107973154 -41543883 - MLT1B LTR MaLR -188 202 172 6 1408 339 119 0 0 chr6 107973154 107973221 -41543816 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1408 509 253 74 79 chr6 107973221 107973393 -41543644 - MLT1B LTR MaLR -219 171 2 6 1408 465 103 0 0 chr6 107973599 107973667 -41543370 + (CACG)n Simple_repeat Simple_repeat 2 69 0 6 1408 800 208 107 21 chr6 107973982 107974169 -41542868 + B3 SINE B2 1 203 -13 6 1408 827 247 161 19 chr6 107974473 107974795 -41542242 + ORR1D2 LTR MaLR 1 368 -2 6 1408 593 231 21 43 chr6 107976127 107976267 -41540770 + B1F SINE Alu 12 148 -1 6 1408 435 284 33 33 chr6 107976301 107976421 -41540616 + RSINE1 SINE B4 45 164 -1 6 1408 2873 56 68 0 chr6 107976421 107976815 -41540222 + BGLII LTR ERVK 1 421 0 6 1408 5460 116 35 19 chr6 107977314 107978191 -41538846 + RMER12 LTR ERVK 1 891 -431 6 1408 284 83 21 0 chr6 107978193 107978241 -41538796 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1408 486 0 0 0 chr6 107978245 107978299 -41538738 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 6 1408 330 207 62 155 chr6 107978300 107978397 -41538640 + RMER12 LTR ERVK 1004 1091 -231 6 1408 232 311 93 46 chr6 107978715 107978823 -41538214 + B4A SINE B4 1 113 -179 6 1408 480 62 0 0 chr6 107978941 107979005 -41538032 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1408 198 209 0 0 chr6 107979006 107979049 -41537988 + GA-rich Low_complexity Low_complexity 5 47 0 6 1408 653 312 78 45 chr6 107979118 107979427 -41537610 - MLT1A0 LTR MaLR -46 319 1 6 1408 727 232 113 44 chr6 107979757 107980035 -41537002 + RMER20B LTR ERVK 86 416 -211 6 1408 228 358 53 35 chr6 107980051 107980164 -41536873 + RMER20B LTR ERVK 489 603 -24 6 1408 848 17 96 0 chr6 107980219 107980402 -41536635 - L1Md_F3 LINE L1 0 6584 6445 7 1408 906 60 0 0 chr6 107980463 107980580 -41536457 + (GGAGA)n Simple_repeat Simple_repeat 4 120 0 7 1408 575 287 82 25 chr6 107980598 107980877 -41536160 + Lx7 LINE L1 5592 5886 -1810 7 1408 2827 61 0 0 chr6 107980889 107981235 -41535802 - ORR1A1 LTR MaLR 0 346 1 7 1408 11764 59 105 1 chr6 107981235 107982857 -41534180 - ORR1A1-int LTR MaLR 0 1792 2 7 1408 2850 58 0 0 chr6 107982858 107983204 -41533833 - ORR1A1 LTR MaLR 0 346 1 7 1408 381 43 0 0 chr6 107983224 107983271 -41533766 + (TATG)n Simple_repeat Simple_repeat 2 48 0 7 1408 29681 86 22 9 chr6 107983402 107988749 -41528288 + L1Md_F2 LINE L1 168 5586 -297 7 1408 7445 61 4 34 chr6 107988750 107989765 -41527272 + L1Md_F2 LINE L1 5588 6572 -10 7 1408 24 0 0 0 chr6 107989765 107989789 -41527248 + AT_rich Low_complexity Low_complexity 1 24 0 7 1408 1691 252 47 5 chr6 107990309 107990711 -41526326 + MTD LTR MaLR 1 419 0 7 1408 504 0 0 0 chr6 107991137 107991193 -41525844 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1408 38882 12 1 6 chr6 107991431 107997844 -41519193 - L1Md_A LINE L1 0 6582 205 7 1408 28 48 0 0 chr6 107997925 107997967 -41519070 + AT_rich Low_complexity Low_complexity 1 42 0 7 1408 22 0 0 0 chr6 107998213 107998235 -41518802 + AT_rich Low_complexity Low_complexity 1 22 0 7 1408 291 28 0 0 chr6 107998571 107998607 -41518430 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 7 1408 918 170 13 0 chr6 107998686 107998845 -41518192 + B2_Mm2 SINE B2 1 161 -34 7 1408 405 0 0 0 chr6 107998845 107998890 -41518147 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 7 1408 367 335 76 29 chr6 107999178 107999455 -41517582 - B4A SINE B4 -2 290 1 7 1408 1433 131 18 0 chr6 107999689 107999911 -41517126 - RMER6A LTR ERVK -25 731 506 7 1408 297 0 0 0 chr6 107999918 107999951 -41517086 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1408 441 0 0 0 chr6 107999951 107999999 -41517038 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1408 204 214 0 0 chr6 108000000 108000056 -41516981 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1408 2455 156 16 25 chr6 108000064 108000505 -41516532 - RMER6A LTR ERVK -267 489 53 2 1408 1002 117 43 0 chr6 108000508 108000670 -41516367 + Lx2 LINE L1 6826 6994 -3 3 1408 1546 126 44 16 chr6 108000765 108001015 -41516022 + RLTR22_Mur LTR ERVK 1592 1848 0 4 1408 565 109 0 151 chr6 108001015 108001134 -41515903 - RMER6A LTR ERVK -653 103 3 5 1408 277 305 125 59 chr6 108001407 108001543 -41515494 - PB1D10 SINE Alu -2 147 3 6 1408 686 277 28 28 chr6 108001620 108001802 -41515235 + B3A SINE B2 1 182 -16 7 1408 816 203 166 72 chr6 108002024 108002289 -41514748 + B4A SINE B4 1 290 -2 8 1408 1403 108 0 25 chr6 108002594 108002794 -41514243 + B2_Mm2 SINE B2 1 195 0 9 1409 725 289 150 48 chr6 108004130 108004650 -41512387 - MER119 DNA MER1_type -3 580 8 1 1409 499 227 57 57 chr6 108004765 108004905 -41512132 + MTE2b LTR MaLR 222 361 -18 1 1409 22 70 0 0 chr6 108005027 108005070 -41511967 + AT_rich Low_complexity Low_complexity 1 43 0 1 1409 5713 57 0 0 chr6 108005300 108006000 -41511037 - L1_Mm LINE L1 -880 5003 4304 1 1409 200 128 25 25 chr6 108006380 108006420 -41510617 + C-rich Low_complexity Low_complexity 1 40 0 1 1409 227 392 41 8 chr6 108006472 108006593 -41510444 + MIRb SINE MIR 128 252 -16 1 1409 467 33 16 0 chr6 108006854 108006915 -41510122 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1409 323 219 93 27 chr6 108007790 108007865 -41509172 + ID4 SINE ID 1 80 -3 1 1409 2042 282 55 39 chr6 108009532 108010296 -41506741 + Lx9 LINE L1 6841 7616 -28 1 1409 297 318 197 65 chr6 108010327 108010636 -41506401 - LTR40a LTR ERVL -81 381 32 1 1409 21 0 0 0 chr6 108010675 108010696 -41506341 + AT_rich Low_complexity Low_complexity 1 21 0 2 1409 510 260 106 7 chr6 108010784 108010935 -41506102 + ID_B1 SINE B4 50 215 -9 2 1409 275 290 0 28 chr6 108012396 108012467 -41504570 - PB1D7 SINE Alu -5 115 47 2 1409 389 375 45 32 chr6 108012499 108012719 -41504318 - LTR87 LTR ERVL? -383 241 19 2 1409 216 0 0 0 chr6 108012731 108012755 -41504282 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1409 320 293 51 8 chr6 108013267 108013384 -41503653 + PB1 SINE Alu 2 123 -4 2 1409 239 154 0 0 chr6 108013408 108013447 -41503590 - MTD LTR MaLR -4 415 377 2 1409 257 319 138 0 chr6 108013834 108013928 -41503109 + PB1D10 SINE Alu 6 112 -5 2 1409 414 0 0 0 chr6 108013940 108013986 -41503051 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1409 180 111 0 0 chr6 108014247 108014274 -41502763 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 2 1409 402 115 0 0 chr6 108014415 108014476 -41502561 + (GGA)n Simple_repeat Simple_repeat 2 62 0 3 1409 23 0 0 0 chr6 108015888 108015911 -41501126 + AT_rich Low_complexity Low_complexity 1 23 0 3 1409 327 25 0 0 chr6 108016125 108016165 -41500872 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1409 226 263 53 0 chr6 108017286 108017343 -41499694 - L2c LINE L2 -1 3425 3366 3 1409 294 320 0 39 chr6 108017453 108017557 -41499480 - L2c LINE L2 -9 3378 3279 3 1409 378 0 0 0 chr6 108017598 108017640 -41499397 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1409 403 266 21 11 chr6 108017757 108017852 -41499185 + PB1D10 SINE Alu 14 109 -8 3 1409 233 347 83 0 chr6 108017860 108017932 -41499105 + ID4 SINE ID 5 82 -1 3 1409 225 324 27 27 chr6 108018618 108018691 -41498346 - ID4 SINE ID -9 74 2 3 1409 254 191 0 0 chr6 108020632 108020679 -41496358 + RMER21A LTR ERV1 419 465 -482 3 1409 715 223 157 41 chr6 108020670 108020937 -41496100 + RMER21B LTR ERV1 268 565 -277 3 1409 725 281 23 23 chr6 108021233 108021448 -41495589 - ID_B1 SINE B4 -8 216 2 4 1409 23 0 0 0 chr6 108022029 108022052 -41494985 + AT_rich Low_complexity Low_complexity 1 23 0 4 1409 303 48 95 0 chr6 108022070 108022133 -41494904 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 4 1409 248 289 0 0 chr6 108022265 108022310 -41494727 + RSINE1 SINE B4 3 47 -118 4 1409 369 62 0 0 chr6 108022440 108022488 -41494549 + (TCCCC)n Simple_repeat Simple_repeat 4 51 0 4 1409 474 212 0 0 chr6 108022589 108022669 -41494368 + ID4 SINE ID 2 81 -2 4 1409 188 312 97 9 chr6 108023572 108023685 -41493352 + L4 LINE RTE 1684 1806 -223 4 1409 1026 246 33 21 chr6 108023935 108024176 -41492861 - B4A SINE B4 -47 245 2 4 1409 1653 234 44 24 chr6 108024608 108025059 -41491978 + Lx8 LINE L1 6892 7351 -122 4 1409 822 246 15 53 chr6 108025290 108025496 -41491541 + B3A SINE B2 1 198 0 4 1409 257 329 0 14 chr6 108026818 108026892 -41490145 + MLT1J LTR MaLR 235 307 -205 5 1409 311 221 103 0 chr6 108027503 108027571 -41489466 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 5 1409 444 19 0 0 chr6 108028322 108028375 -41488662 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1409 1339 194 187 3 chr6 108028379 108028695 -41488342 - ORR1D1 LTR MaLR 0 374 1 5 1409 599 241 42 30 chr6 108028874 108029041 -41487996 + L1MC3 LINE L1 7306 7474 -311 5 1409 686 232 154 6 chr6 108029042 108029211 -41487826 + B3 SINE B2 2 195 -21 5 1409 311 210 25 0 chr6 108029246 108029327 -41487710 + L1MC3 LINE L1 7459 7541 -244 5 1409 294 206 0 0 chr6 108029555 108029618 -41487419 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1409 545 294 58 18 chr6 108029621 108029846 -41487191 + L1M4 LINE L1 5360 5593 -591 5 1409 387 232 32 0 chr6 108029940 108030035 -41487002 + MT2A LTR ERVL 1 98 -435 5 1409 726 220 25 105 chr6 108030087 108030326 -41486711 + MT2A LTR ERVL 314 533 0 5 1409 974 210 19 28 chr6 108030574 108030803 -41486234 - B3 SINE B2 -6 210 6 5 1409 492 350 187 15 chr6 108030805 108031136 -41485901 + Zaphod DNA Tip100 229 616 -3415 6 1409 8070 69 20 2 chr6 108031138 108032369 -41484668 - L1_Mus3 LINE L1 -4 6634 5381 6 1409 2979 16 3 0 chr6 108032369 108032690 -41484347 - RLTRETN_Mm LTR ERVK 0 322 1 6 1409 42582 25 1 6 chr6 108032690 108037560 -41479477 - MMETn-int LTR ERVK 0 4844 1 6 1409 2991 12 3 0 chr6 108037560 108037881 -41479156 - RLTRETN_Mm LTR ERVK 0 322 1 6 1409 6647 171 107 40 chr6 108037881 108038711 -41478326 - L1_Mur3 LINE L1 -499 5381 4602 6 1409 986 119 12 0 chr6 108038711 108038871 -41478166 + (TTTC)n Simple_repeat Simple_repeat 4 165 0 6 1409 1132 74 0 0 chr6 108038872 108039007 -41478030 - B1_Mm SINE Alu -11 136 2 6 1409 6647 171 107 40 chr6 108039007 108039640 -41477397 - L1_Mur3 LINE L1 -1279 4601 3818 6 1409 1383 107 0 11 chr6 108039663 108039852 -41477185 + B2_Mm2 SINE B2 2 188 -7 6 1409 969 273 210 6 chr6 108039881 108040372 -41476665 + Zaphod DNA Tip100 3305 3895 -136 6 1409 264 122 0 0 chr6 108040742 108040783 -41476254 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1409 1260 183 157 14 chr6 108041405 108041699 -41475338 + MTD LTR MaLR 84 419 0 6 1409 917 282 52 4 chr6 108042773 108043043 -41473994 + B4A SINE B4 4 286 -6 6 1409 491 291 13 38 chr6 108044746 108044916 -41472121 + B3A SINE B2 59 216 0 7 1409 749 230 85 0 chr6 108046265 108046430 -41470607 + B3A SINE B2 3 181 -17 7 1409 690 249 82 12 chr6 108046459 108046630 -41470407 + B3A SINE B2 1 183 -15 7 1409 723 196 206 6 chr6 108046711 108046891 -41470146 + B3 SINE B2 1 216 0 7 1409 272 306 28 0 chr6 108047333 108047405 -41469632 - PB1D10 SINE Alu -2 115 42 7 1409 2727 189 110 5 chr6 108047511 108048113 -41468924 - Lx9 LINE L1 -6 7638 6974 7 1409 861 206 82 34 chr6 108048205 108048411 -41468626 + B3 SINE B2 1 216 0 7 1409 1227 41 0 76 chr6 108049162 108049320 -41467717 - B1_Mus1 SINE Alu 0 148 3 7 1409 259 333 65 54 chr6 108050561 108050644 -41466393 - Charlie1 DNA MER1_type -2611 170 91 7 1409 252 0 0 0 chr6 108050644 108050672 -41466365 + (CTA)n Simple_repeat Simple_repeat 1 28 0 7 1409 259 333 65 54 chr6 108050672 108050756 -41466281 - Charlie1 DNA MER1_type -2691 90 1 7 1409 343 269 0 0 chr6 108051043 108051121 -41465916 - ID4 SINE ID -5 78 1 8 1409 444 46 0 0 chr6 108051409 108051474 -41465563 - B2_Mm1a SINE B2 -2 191 127 8 1409 1141 109 12 0 chr6 108051531 108051696 -41465341 - B2_Mm1t SINE B2 -14 179 13 8 1409 578 289 33 7 chr6 108053103 108053256 -41463781 - B3 SINE B2 -14 202 46 8 1409 303 261 215 16 chr6 108053307 108053428 -41463609 + RSINE1 SINE B4 9 153 -12 8 1409 1085 337 64 38 chr6 108054619 108055147 -41461890 + Tigger9a DNA Tigger 22 563 -169 8 1409 474 18 0 0 chr6 108055209 108055264 -41461773 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1409 389 311 7 0 chr6 108055296 108055431 -41461606 + (TG)n Simple_repeat Simple_repeat 1 136 0 8 1409 439 278 63 8 chr6 108055463 108055590 -41461447 + ORR1E LTR MaLR 6 139 -220 8 1409 275 290 161 0 chr6 108056257 108056350 -41460687 + ID_B1 SINE B4 99 206 -18 8 1409 215 235 111 141 chr6 108056264 108056363 -41460674 + PB1D7 SINE Alu 25 120 0 8 1409 481 327 19 7 chr6 108056366 108056520 -41460517 + RSINE1 SINE B4 3 158 -7 9 1409 2536 89 17 52 chr6 108057172 108057632 -41459405 - RLTR11B LTR ERVK -9 444 1 9 1409 222 281 190 21 chr6 108058085 108058227 -41458810 - MIR3 SINE MIR -23 185 20 9 1409 195 100 0 0 chr6 108058920 108058950 -41458087 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1409 1163 61 0 26 chr6 108059108 108059260 -41457777 + B1_Mus1 SINE Alu 1 148 0 9 1409 1361 273 33 0 chr6 108060791 108061128 -41455909 + MTE2b LTR MaLR 1 348 -31 9 1409 321 125 0 18 chr6 108061219 108061276 -41455761 + MTE2b LTR MaLR 323 378 -1 9 1409 321 304 10 0 chr6 108061285 108061387 -41455650 + GA-rich Low_complexity Low_complexity 2 104 0 9 1409 324 0 0 0 chr6 108061533 108061569 -41455468 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 9 1409 250 161 0 0 chr6 108061586 108061642 -41455395 - L1_Mus4 LINE L1 -2 6634 6579 9 1409 387 0 0 0 chr6 108063256 108063299 -41453738 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1409 380 294 39 27 chr6 108063984 108064204 -41452833 - MIR SINE MIR -3 259 38 1 1409 970 204 37 0 chr6 108064287 108064478 -41452559 + B3 SINE B2 1 198 -18 1 1409 205 152 0 0 chr6 108064479 108064512 -41452525 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1409 25 71 0 14 chr6 108064634 108064653 -41452384 + AT_rich Low_complexity Low_complexity 1 19 0 1 1409 741 215 215 0 chr6 108064653 108064830 -41452207 + B3 SINE B2 2 216 0 1 1409 25 71 0 14 chr6 108064830 108064881 -41452156 + AT_rich Low_complexity Low_complexity 1 51 0 1 1409 1003 52 0 0 chr6 108064884 108065018 -41452019 - B1_Mus1 SINE Alu -5 143 10 1 1409 29 0 0 0 chr6 108065022 108065051 -41451986 + AT_rich Low_complexity Low_complexity 1 29 0 1 1409 289 268 79 18 chr6 108065147 108065423 -41451614 + L1MEc LINE L1 2086 2381 -3938 1 1409 409 17 17 17 chr6 108065710 108065769 -41451268 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1409 1254 104 11 16 chr6 108065882 108066067 -41450970 - B2_Mm2 SINE B2 -10 185 2 1 1409 361 285 0 0 chr6 108066150 108066244 -41450793 + L1MEc LINE L1 3683 3776 -2537 1 1409 210 258 32 16 chr6 108066518 108066581 -41450456 + B1F SINE Alu 79 142 -7 1 1409 225 228 56 95 chr6 108066620 108066746 -41450291 + L1MD LINE L1 3839 3959 -2187 1 1409 707 252 0 0 chr6 108066836 108066979 -41450058 + B1_Mur1 SINE Alu 2 144 -5 1 1409 414 0 0 0 chr6 108066979 108067025 -41450012 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1409 806 116 0 8 chr6 108067022 108067152 -41449885 + (GAA)n Simple_repeat Simple_repeat 3 131 0 1 1409 453 90 0 0 chr6 108067175 108067242 -41449795 + (TAGG)n Simple_repeat Simple_repeat 2 68 0 1 1409 26 0 0 0 chr6 108067390 108067416 -41449621 + AT_rich Low_complexity Low_complexity 1 26 0 1 1409 473 228 0 66 chr6 108067487 108067609 -41449428 - PB1D9 SINE Alu -6 114 1 1 1409 203 381 49 12 chr6 108067762 108067924 -41449113 + MER5B DNA MER1_type 11 178 0 1 1409 6236 47 4 3 chr6 108068896 108069660 -41447377 + L1Md_F2 LINE L1 5818 6582 0 1 1409 993 203 45 0 chr6 108070869 108071071 -41445966 + B3 SINE B2 1 211 -5 1 1409 473 252 36 72 chr6 108071624 108071791 -41445246 + RSINE1 SINE B4 3 163 -2 1 1409 2254 260 167 0 chr6 108071865 108072558 -41444479 + Lx8 LINE L1 6386 7194 -279 1 1409 38 61 0 0 chr6 108072632 108072698 -41444339 + AT_rich Low_complexity Low_complexity 1 66 0 1 1409 368 335 33 13 chr6 108072741 108072892 -41444145 + MLT2F LTR ERVL 8 161 -502 1 1409 574 329 59 16 chr6 108072915 108072944 -41444093 + MLT2F LTR ERVL 251 279 -384 1 1409 198 0 0 0 chr6 108072944 108072966 -41444071 + (TCCA)n Simple_repeat Simple_repeat 2 23 0 1 1409 574 329 59 16 chr6 108072966 108073189 -41443848 + MLT2F LTR ERVL 280 513 -150 1 1409 462 18 0 0 chr6 108073973 108074028 -41443009 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1409 25 31 0 0 chr6 108074116 108074148 -41442889 + AT_rich Low_complexity Low_complexity 1 32 0 1 1409 344 323 55 24 chr6 108074804 108074969 -41442068 + MIRb SINE MIR 45 214 -54 1 1409 420 302 72 31 chr6 108075555 108075750 -41441287 + L2 LINE L2 2552 2754 -665 1 1409 461 219 8 16 chr6 108076100 108076221 -41440816 - B1_Mur1 SINE Alu -1 148 29 1 1409 214 328 76 25 chr6 108076141 108076260 -41440777 - B4 SINE B4 -94 198 74 1 1409 359 146 0 0 chr6 108077547 108077602 -41439435 + PB1D9 SINE Alu 1 55 -65 1 1409 687 201 0 0 chr6 108077602 108077746 -41439291 + A-rich Low_complexity Low_complexity 3 146 0 1 1409 308 288 93 0 chr6 108079064 108079182 -41437855 + B1F2 SINE Alu 3 131 -18 1 1409 357 62 0 0 chr6 108079195 108079243 -41437794 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1409 289 294 11 11 chr6 108079245 108079338 -41437699 + A-rich Low_complexity Low_complexity 3 95 0 1 1409 1356 83 39 0 chr6 108080293 108080473 -41436564 - B2_Mm2 SINE B2 -7 188 2 1 1409 386 248 87 40 chr6 108081546 108081672 -41435365 - RSINE1 SINE B4 -31 134 3 1 1409 208 330 75 0 chr6 108081674 108081768 -41435269 - MIR SINE MIR -106 156 56 1 1409 559 307 83 13 chr6 108081992 108082220 -41434817 - MER2 DNA MER2_type -9 336 93 1 1409 255 31 0 0 chr6 108083040 108083072 -41433965 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1409 206 139 28 0 chr6 108083102 108083147 -41433890 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 1 1409 396 103 0 0 chr6 108083147 108083205 -41433832 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 1 1409 204 190 51 17 chr6 108083205 108083218 -41433819 + (TAGA)n Simple_repeat Simple_repeat 3 15 0 1 1409 255 293 13 13 chr6 108083372 108083448 -41433589 + ID4 SINE ID 2 77 -6 1 1409 260 241 0 17 chr6 108083391 108083450 -41433587 + ID SINE ID 23 80 -144 1 1409 269 228 13 0 chr6 108083889 108083968 -41433069 + CT-rich Low_complexity Low_complexity 1 80 0 1 1409 281 242 58 78 chr6 108084067 108084115 -41432922 + RMER10A LTR ERVL 318 368 -74 1 1409 522 0 0 0 chr6 108084115 108084173 -41432864 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1409 281 242 58 78 chr6 108084173 108084227 -41432810 + RMER10A LTR ERVL 369 418 -24 1 1409 300 27 0 0 chr6 108084440 108084477 -41432560 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1409 771 259 57 38 chr6 108084550 108084815 -41432222 + Lx8 LINE L1 6878 7147 -326 1 1409 251 252 75 28 chr6 108084858 108084964 -41432073 + Lx8 LINE L1 7358 7468 -5 1 1409 1643 203 82 15 chr6 108086048 108086439 -41430598 - MTD LTR MaLR -2 417 1 1 1409 329 158 0 89 chr6 108088367 108088457 -41428580 - Lx9 LINE L1 0 7644 7563 1 1409 292 253 143 0 chr6 108089748 108089839 -41427198 + PB1D10 SINE Alu 3 106 -11 1 1409 22 35 0 0 chr6 108090097 108090126 -41426911 + AT_rich Low_complexity Low_complexity 1 29 0 1 1409 1374 94 5 16 chr6 108090557 108090751 -41426286 + B2_Mm1a SINE B2 2 193 0 1 1409 625 276 189 26 chr6 108091451 108091831 -41425206 + L1MEg LINE L1 198 639 -5445 1 1409 738 260 39 0 chr6 108091887 108092095 -41424942 + B3 SINE B2 1 216 0 1 1409 258 286 0 0 chr6 108092445 108092501 -41424536 + B1F SINE Alu 75 130 -19 1 1409 273 57 0 0 chr6 108092502 108092537 -41424500 + (AGGGGG)n Simple_repeat Simple_repeat 6 40 0 1 1409 1758 174 89 33 chr6 108093647 108094039 -41422998 + Lx4B LINE L1 6640 7053 -5 1 1409 423 119 0 0 chr6 108095048 108095115 -41421922 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1409 419 244 76 0 chr6 108096183 108096302 -41420735 + ID_B1 SINE B4 80 207 -17 1 1409 2206 175 13 20 chr6 108097137 108097534 -41419503 + ORR1B1 LTR MaLR 1 394 0 1 1409 184 73 0 89 chr6 108097899 108097944 -41419093 + (TCTCTG)n Simple_repeat Simple_repeat 6 46 0 1 1409 1137 80 0 0 chr6 108097961 108098212 -41418825 + (TG)n Simple_repeat Simple_repeat 1 251 0 1 1409 222 118 0 0 chr6 108098273 108098307 -41418730 + (TCC)n Simple_repeat Simple_repeat 3 36 0 1 1409 567 289 87 10 chr6 108098472 108098668 -41418369 - LSU-rRNA_Hsa rRNA rRNA -2550 2485 2275 1 1409 392 327 24 65 chr6 108098891 108099061 -41417976 - RSINE1 SINE B4 0 165 3 1 1409 765 246 148 16 chr6 108099104 108099360 -41417677 - LSU-rRNA_Hsa rRNA rRNA -3129 1906 1617 1 1409 498 114 0 0 chr6 108099751 108099830 -41417207 + (GGGA)n Simple_repeat Simple_repeat 2 80 0 1 1409 189 0 0 0 chr6 108099916 108099937 -41417100 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1409 312 304 31 1 chr6 108099939 108100051 -41416986 + MLT1A1 LTR MaLR 6 120 -254 1 1409 441 274 40 0 chr6 108100112 108100236 -41416801 + MLT1A1 LTR MaLR 278 406 -2 1 1409 467 241 155 23 chr6 108100709 108100883 -41416154 + B3A SINE B2 1 197 -1 1 1409 22 35 0 0 chr6 108100910 108100939 -41416098 + AT_rich Low_complexity Low_complexity 1 29 0 1 1409 3337 23 18 20 chr6 108100956 108101353 -41415684 + MTA_Mm LTR MaLR 1 396 0 1 1409 260 280 73 52 chr6 108101380 108101592 -41415445 + MIR SINE MIR 14 240 -28 1 1409 180 0 0 0 chr6 108101866 108101886 -41415151 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1409 356 340 28 7 chr6 108101887 108102032 -41415005 - RSINE1 SINE B4 -17 148 1 1 1409 419 219 76 0 chr6 108102033 108102138 -41414899 - ID_B1 SINE B4 0 224 112 1 1409 180 0 0 0 chr6 108104502 108104522 -41412515 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1409 1219 88 11 32 chr6 108106820 108107008 -41410029 + L1_Mus3 LINE L1 6453 6636 -2 1 1409 412 301 47 56 chr6 108108502 108108717 -41408320 - MER20 DNA MER1_type -3 216 4 1 1409 2682 161 23 83 chr6 108108899 108109454 -41407583 + RMER1B Other Other 541 1062 -4 1 1409 850 186 11 2 chr6 108110191 108110360 -41406677 - B3 SINE B2 -4 194 22 1 1409 592 270 287 0 chr6 108111998 108112291 -41404746 + ORR1C1 LTR MaLR 1 377 -1 1 1409 263 28 0 0 chr6 108112323 108112359 -41404678 + RMER4A LTR ERVK 1 36 -430 1 1409 1561 162 12 53 chr6 108112365 108112546 -41404491 + RMER4A LTR ERVK 160 343 -123 1 1409 378 0 0 0 chr6 108112546 108112588 -41404449 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1409 1561 162 12 53 chr6 108112588 108112726 -41404311 + RMER4A LTR ERVK 344 466 0 1 1409 465 221 35 4 chr6 108112962 108113070 -41403967 - PB1D10 SINE Alu -2 115 8 1 1409 298 303 70 13 chr6 108113096 108113135 -41403902 - B4A SINE B4 -46 246 140 1 1409 540 162 20 0 chr6 108113135 108113234 -41403803 - PB1D9 SINE Alu -6 114 14 1 1409 298 303 70 13 chr6 108113234 108113253 -41403784 - B4A SINE B4 -46 139 81 1 1409 797 163 14 21 chr6 108113902 108114046 -41402991 + B1_Mus1 SINE Alu 5 147 -1 1 1409 847 271 80 0 chr6 108114775 108115026 -41402011 - B4 SINE B4 -20 272 2 1 1409 213 211 0 0 chr6 108115238 108115276 -41401761 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1409 207 0 0 0 chr6 108115610 108115633 -41401404 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1409 4046 161 25 16 chr6 108115644 108116460 -41400577 - Lx5 LINE L1 -710 6340 5511 1 1409 3587 197 60 14 chr6 108116456 108117162 -41399875 + Lx5 LINE L1 6313 7050 0 1 1409 1297 240 62 9 chr6 108118035 108118371 -41398666 + ORR1E LTR MaLR 2 355 -4 1 1409 567 233 56 19 chr6 108118506 108118668 -41398369 + L1MB7 LINE L1 6007 6174 -10 1 1409 288 284 126 22 chr6 108118840 108119063 -41397974 + L1MD2 LINE L1 6092 6337 -22 1 1409 362 319 67 0 chr6 108119095 108119230 -41397807 - B1F1 SINE Alu -1 148 5 2 1409 226 184 20 0 chr6 108119435 108119484 -41397553 + A-rich Low_complexity Low_complexity 2 51 0 2 1409 270 237 0 17 chr6 108119601 108119661 -41397376 + ID4_ SINE ID 3 61 -22 2 1409 278 165 0 12 chr6 108119671 108119751 -41397286 + CT-rich Low_complexity Low_complexity 2 80 0 2 1409 408 71 0 0 chr6 108119751 108119807 -41397230 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1409 967 196 77 10 chr6 108119889 108120085 -41396952 - B3 SINE B2 -5 211 3 2 1409 373 293 103 53 chr6 108120085 108120343 -41396694 + L1MC5 LINE L1 7000 7259 -702 2 1409 1178 131 126 0 chr6 108120343 108120542 -41396495 - URR1A DNA MER1_type 0 226 3 2 1409 373 293 103 53 chr6 108120542 108120701 -41396336 + L1MC5 LINE L1 7260 7438 -523 2 1409 1687 26 0 10 chr6 108121289 108121483 -41395554 - B2_Mm1a SINE B2 0 193 2 2 1409 883 193 28 6 chr6 108122363 108122545 -41394492 - B3 SINE B2 -30 186 1 2 1409 947 109 0 7 chr6 108124115 108124254 -41392783 - B1_Mus1 SINE Alu -9 139 2 2 1409 237 282 28 0 chr6 108124317 108124388 -41392649 - MER5A DNA MER1_type -43 146 74 2 1409 449 285 133 48 chr6 108124800 108125010 -41392027 + B4A SINE B4 2 230 -62 2 1409 235 167 15 15 chr6 108125087 108125154 -41391883 + CT-rich Low_complexity Low_complexity 2 68 0 2 1409 893 272 18 61 chr6 108126303 108126581 -41390456 + B4A SINE B4 8 273 -19 2 1409 247 318 59 0 chr6 108126876 108126961 -41390076 - B3A SINE B2 -22 176 87 2 1409 224 386 6 28 chr6 108126963 108127139 -41389898 + B4A SINE B4 96 267 -25 2 1409 2018 162 36 28 chr6 108127270 108127657 -41389380 + Lx4B LINE L1 6668 7057 -1 2 1409 467 273 55 68 chr6 108127654 108127874 -41389163 + L1MB7 LINE L1 5945 6161 -23 2 1409 3500 25 2 0 chr6 108127888 108128283 -41388754 - MTA_Mm LTR MaLR 0 396 1 2 1409 673 177 165 0 chr6 108128631 108128789 -41388248 - B3 SINE B2 -23 193 10 2 1409 631 250 29 0 chr6 108129503 108129639 -41387398 + B1_Mur2 SINE Alu 1 140 -9 2 1409 1479 68 16 21 chr6 108129721 108129915 -41387122 + B2_Mm2 SINE B2 1 193 -2 2 1409 215 163 23 23 chr6 108130180 108130224 -41386813 + CT-rich Low_complexity Low_complexity 2 45 0 2 1409 428 153 12 0 chr6 108130289 108130374 -41386663 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1409 653 298 100 22 chr6 108130412 108130683 -41386354 - B4 SINE B4 0 292 1 2 1409 675 185 59 0 chr6 108131119 108131254 -41385783 + B3A SINE B2 1 143 -55 2 1409 1067 102 7 7 chr6 108131301 108131449 -41385588 + B1_Mus1 SINE Alu 1 148 0 2 1409 180 65 87 0 chr6 108131449 108131495 -41385542 + A-rich Low_complexity Low_complexity 1 50 0 2 1409 940 201 226 16 chr6 108131569 108131997 -41385040 + RMER15 LTR ERVL 22 575 0 2 1409 28 0 0 0 chr6 108132027 108132055 -41384982 + AT_rich Low_complexity Low_complexity 1 28 0 2 1409 216 186 62 78 chr6 108132131 108132195 -41384842 + PB1D10 SINE Alu 49 111 -6 2 1409 466 331 24 48 chr6 108132785 108132953 -41384084 + RSINE1 SINE B4 2 165 0 2 1409 311 278 36 18 chr6 108133426 108133536 -41383501 - RLTR42-int LTR ERVK -4247 1275 1164 2 1410 944 185 59 15 chr6 108136094 108136297 -41380740 - RMER10B LTR ERVL 0 398 187 2 1410 284 250 29 59 chr6 108136367 108136469 -41380568 + RLTR1B LTR ERV1 135 233 -279 2 1410 204 40 0 0 chr6 108136476 108136501 -41380536 + (GGA)n Simple_repeat Simple_repeat 2 26 0 2 1410 878 149 180 0 chr6 108136502 108136724 -41380313 - RMER10B LTR ERVL -135 263 2 2 1410 461 260 28 44 chr6 108136786 108136967 -41380070 + B2_Mm2 SINE B2 8 185 -10 2 1410 349 310 0 25 chr6 108137182 108137301 -41379736 - PB1D10 SINE Alu -1 116 1 2 1410 189 0 0 0 chr6 108137359 108137380 -41379657 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1410 1893 183 40 23 chr6 108137440 108137837 -41379200 - MTB_Mm LTR MaLR 0 407 4 2 1410 660 244 150 0 chr6 108138014 108138194 -41378843 - B3 SINE B2 -6 210 4 2 1410 421 271 75 0 chr6 108138235 108138342 -41378695 + B3 SINE B2 7 121 -95 2 1410 237 171 143 24 chr6 108138519 108138603 -41378434 + L1MC5 LINE L1 7824 7917 -44 2 1410 1485 230 67 13 chr6 108138874 108139249 -41377788 - MTC LTR MaLR -6 415 21 2 1410 1076 263 48 35 chr6 108139546 108139803 -41377234 - ORR1E LTR MaLR -44 315 54 2 1410 4886 142 62 31 chr6 108139803 108140680 -41376357 + RMER13B LTR ERVK 1 904 -4 2 1410 1076 263 48 35 chr6 108140680 108140733 -41376304 - ORR1E LTR MaLR -306 53 1 2 1410 379 239 88 9 chr6 108141331 108141445 -41375592 - RSINE1 SINE B4 -18 147 25 2 1410 260 121 33 33 chr6 108141469 108141529 -41375508 - L1M4 LINE L1 -530 5654 5595 2 1410 278 221 57 23 chr6 108141529 108141617 -41375420 + MLT1A1 LTR MaLR 318 408 0 2 1410 1306 83 0 32 chr6 108141865 108142051 -41374986 + B2_Mm2 SINE B2 2 181 -14 2 1410 549 270 65 14 chr6 108142071 108142210 -41374827 + B3A SINE B2 16 161 -37 2 1410 441 0 0 0 chr6 108142216 108142265 -41374772 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1410 631 275 98 0 chr6 108142288 108142524 -41374513 - L1M4 LINE L1 -418 5766 5508 2 1410 24 0 0 0 chr6 108142885 108142909 -41374128 + AT_rich Low_complexity Low_complexity 1 24 0 2 1410 279 360 59 35 chr6 108143387 108143649 -41373388 + L2b LINE L2 2934 3207 -180 2 1410 1219 240 113 17 chr6 108143760 108144111 -41372926 - MTD LTR MaLR 0 379 18 2 1410 22 0 0 0 chr6 108144284 108144306 -41372731 + AT_rich Low_complexity Low_complexity 1 22 0 2 1410 254 333 92 9 chr6 108144488 108144597 -41372440 - PB1 SINE Alu -8 119 2 2 1410 1072 216 24 0 chr6 108144807 108145015 -41372022 - B3 SINE B2 -3 213 1 2 1410 465 292 85 0 chr6 108145022 108145152 -41371885 - B1_Mur1 SINE Alu -8 141 1 2 1410 2695 324 70 40 chr6 108145168 108146118 -41370919 - Lx8 LINE L1 0 7473 6483 2 1410 1132 57 43 0 chr6 108146118 108146258 -41370779 - B1_Mm SINE Alu 0 147 2 2 1410 2695 324 70 40 chr6 108146258 108146621 -41370416 - Lx8 LINE L1 -991 6482 6120 2 1410 433 220 28 10 chr6 108146750 108146872 -41370165 - B1F1 SINE Alu -7 142 20 2 1410 214 286 114 0 chr6 108146929 108146999 -41370038 + ID2 SINE ID 2 79 -4 2 1410 233 318 0 0 chr6 108147429 108147492 -41369545 - MLT1M LTR MaLR -478 194 132 2 1410 717 73 0 0 chr6 108147877 108147973 -41369064 + (GA)n Simple_repeat Simple_repeat 1 96 0 2 1410 552 206 0 29 chr6 108148594 108148699 -41368338 + ID_B1 SINE B4 104 205 -19 2 1410 868 188 26 41 chr6 108148699 108148991 -41368046 - MTD LTR MaLR 0 419 21 2 1410 188 34 0 33 chr6 108148991 108149021 -41368016 + (CAAAA)n Simple_repeat Simple_repeat 5 33 0 2 1410 328 267 139 0 chr6 108149076 108149177 -41367860 + B2_Mm2 SINE B2 12 126 -69 2 1410 1607 149 71 34 chr6 108149329 108149503 -41367534 + ORR1C2 LTR MaLR 1 188 -196 2 1410 531 0 0 0 chr6 108149503 108149562 -41367475 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1410 1607 149 71 34 chr6 108149562 108149713 -41367324 + ORR1C2 LTR MaLR 189 337 -47 2 1410 281 282 112 45 chr6 108149679 108149857 -41367180 + MLT1D LTR MaLR 22 211 -294 2 1410 191 61 59 39 chr6 108149918 108149969 -41367068 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 2 1410 232 310 51 34 chr6 108149999 108150116 -41366921 + MLT1E1A LTR MaLR 537 655 -25 2 1410 376 331 5 126 chr6 108150616 108150823 -41366214 - MER5A DNA MER1_type -3 186 5 2 1410 423 268 24 60 chr6 108151012 108151179 -41365858 + RSINE1 SINE B4 5 165 0 2 1410 747 306 21 46 chr6 108152205 108152486 -41364551 - B4 SINE B4 -15 277 4 2 1410 189 69 0 0 chr6 108152566 108152577 -41364460 + (CA)n Simple_repeat Simple_repeat 2 12 0 2 1410 186 43 0 0 chr6 108152577 108152600 -41364437 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 1410 189 69 0 0 chr6 108152600 108152617 -41364420 + (CA)n Simple_repeat Simple_repeat 1 17 0 2 1410 232 125 98 122 chr6 108152619 108152701 -41364336 - B1_Mm SINE Alu -10 107 28 2 1410 500 244 59 7 chr6 108152764 108152900 -41364137 + B1_Mus2 SINE Alu 3 145 -2 2 1410 290 297 15 45 chr6 108152906 108153040 -41363997 + L1MA5A LINE L1 5400 5529 -771 2 1410 776 68 254 0 chr6 108153057 108153175 -41363862 - B1_Mus1 SINE Alu 0 148 1 2 1410 342 204 20 51 chr6 108153175 108153273 -41363764 + L1MA5A LINE L1 5513 5607 -693 2 1410 351 0 0 0 chr6 108153289 108153328 -41363709 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1410 902 269 19 0 chr6 108153353 108153565 -41363472 + B3 SINE B2 1 216 0 2 1410 625 124 0 0 chr6 108153661 108153750 -41363287 + 4.5SRNA scRNA scRNA 2 90 -4 2 1410 461 302 6 53 chr6 108153823 108153994 -41363043 + RSINE1 SINE B4 3 165 0 2 1410 804 260 97 17 chr6 108153998 108154352 -41362685 + L1MA5A LINE L1 5652 6035 -265 2 1410 198 0 0 0 chr6 108154792 108154814 -41362223 + (CTGGGG)n Simple_repeat Simple_repeat 1 22 0 2 1410 226 185 61 15 chr6 108154815 108154881 -41362156 + B4A SINE B4 11 79 -213 2 1410 467 231 14 78 chr6 108154825 108154966 -41362071 + B3A SINE B2 23 154 -44 2 1410 540 0 0 0 chr6 108154966 108155026 -41362011 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1410 703 0 23 0 chr6 108155033 108155120 -41361917 + (GA)n Simple_repeat Simple_repeat 2 90 0 2 1410 476 228 9 17 chr6 108155131 108155247 -41361790 - L1M4 LINE L1 -431 5747 5633 2 1410 276 100 0 0 chr6 108155505 108155545 -41361492 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1410 266 238 38 0 chr6 108156731 108156811 -41360226 + CT-rich Low_complexity Low_complexity 3 85 0 2 1410 209 279 11 34 chr6 108160152 108160241 -41356796 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 2 1410 245 337 89 0 chr6 108160361 108160462 -41356575 - MER33 DNA MER1_type -206 118 9 3 1410 227 213 16 16 chr6 108163142 108163204 -41353833 + GA-rich Low_complexity Low_complexity 1 62 0 3 1410 189 0 0 0 chr6 108164987 108165008 -41352029 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 3 1410 21 0 0 0 chr6 108166473 108166494 -41350543 + AT_rich Low_complexity Low_complexity 1 21 0 3 1410 234 0 0 0 chr6 108166750 108166776 -41350261 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1410 228 246 48 32 chr6 108167066 108167129 -41349908 - L2a LINE L2 -19 3407 3344 3 1410 583 317 67 24 chr6 108167249 108167809 -41349228 + L1MB3 LINE L1 5481 6069 -102 3 1410 249 242 124 62 chr6 108167873 108168115 -41348922 - L2a LINE L2 -260 3166 2910 3 1410 778 193 259 0 chr6 108168707 108168873 -41348164 + B3 SINE B2 2 210 -6 3 1410 812 245 16 0 chr6 108169084 108169276 -41347761 - B3 SINE B2 -21 195 1 3 1410 186 71 0 0 chr6 108169470 108169498 -41347539 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 3 1410 240 282 88 25 chr6 108169498 108169578 -41347459 - B4 SINE B4 -202 90 6 3 1410 710 294 0 0 chr6 108169635 108169798 -41347239 - B3A SINE B2 -35 163 1 3 1410 379 278 0 0 chr6 108170367 108170464 -41346573 - PB1D10 SINE Alu -9 108 12 3 1410 573 284 17 23 chr6 108170500 108170710 -41346327 - L1MC5 LINE L1 -1053 6989 6703 3 1410 237 151 34 34 chr6 108170809 108170898 -41346139 + CT-rich Low_complexity Low_complexity 1 89 0 3 1410 770 167 35 0 chr6 108170947 108171091 -41345946 - B1_Mur2 SINE Alu 0 149 1 3 1410 373 280 48 0 chr6 108171776 108171901 -41345136 + MER5A1 DNA MER1_type 16 146 -20 3 1410 315 0 0 0 chr6 108172520 108172555 -41344482 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1410 193 247 139 12 chr6 108172711 108172797 -41344240 + L2a LINE L2 3325 3421 -5 3 1410 672 254 40 105 chr6 108173248 108173552 -41343485 + B4 SINE B4 1 284 -8 3 1410 253 337 32 53 chr6 108173655 108173843 -41343194 + MER20 DNA MER1_type 33 216 -3 3 1410 320 164 15 0 chr6 108173980 108174047 -41342990 + CT-rich Low_complexity Low_complexity 1 68 0 3 1410 349 281 110 47 chr6 108174048 108174175 -41342862 - RSINE1 SINE B4 -2 163 29 3 1410 189 0 0 0 chr6 108174829 108174850 -41342187 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1410 198 0 0 0 chr6 108176021 108176043 -41340994 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 3 1410 254 259 0 111 chr6 108176715 108176841 -41340196 - Charlie1b DNA MER1_type -5 518 407 3 1410 398 246 26 11 chr6 108176938 108177040 -41339997 + B1_Mur2 SINE Alu 2 108 -12 3 1410 422 322 37 28 chr6 108177065 108177282 -41339755 - Charlie1b DNA MER1_type -270 253 35 3 1410 220 290 14 0 chr6 108177690 108177759 -41339278 + ID4 SINE ID 4 73 -10 3 1410 214 338 0 0 chr6 108178177 108178248 -41338789 - B1F SINE Alu 0 149 79 3 1410 192 267 33 0 chr6 108179170 108179230 -41337807 - MIRc SINE MIR -132 136 75 3 1410 272 277 95 35 chr6 108179869 108179985 -41337052 - PB1 SINE Alu -4 123 1 3 1410 1063 67 15 0 chr6 108180019 108180153 -41336884 + B1_Mus2 SINE Alu 2 137 -10 3 1410 563 234 17 74 chr6 108180300 108180475 -41336562 - RMER30 DNA MER1_type -29 173 9 3 1410 790 206 194 0 chr6 108180509 108180689 -41336348 + B3 SINE B2 1 215 -1 3 1410 778 209 24 86 chr6 108180728 108180937 -41336100 + B3A SINE B2 2 197 -1 3 1410 347 306 134 0 chr6 108180954 108181088 -41335949 + B4A SINE B4 1 152 -140 3 1410 228 253 71 60 chr6 108181418 108181502 -41335535 - L2a LINE L2 -25 3401 3317 3 1410 275 288 0 0 chr6 108184326 108184406 -41332631 + 5S rRNA rRNA 9 88 -33 3 1410 227 292 15 15 chr6 108184892 108184958 -41332079 + ID4 SINE ID 8 73 -10 3 1410 257 258 32 0 chr6 108185042 108185104 -41331933 + ID4 SINE ID 7 70 -13 3 1410 279 250 35 23 chr6 108185122 108185208 -41331829 + PB1D10 SINE Alu 23 109 -8 3 1410 675 117 0 0 chr6 108185238 108185341 -41331696 + (TCCC)n Simple_repeat Simple_repeat 4 106 0 3 1410 346 288 17 3 chr6 108188761 108188845 -41328192 - PB1D10 SINE Alu -22 105 13 3 1410 247 343 0 14 chr6 108189623 108189694 -41327343 - ID4 SINE ID -10 73 4 3 1410 185 317 37 28 chr6 108190782 108190889 -41326148 + L2c LINE L2 3242 3349 -38 3 1410 234 0 0 0 chr6 108191664 108191690 -41325347 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1410 201 74 0 0 chr6 108192079 108192106 -41324931 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1410 544 236 73 0 chr6 108192113 108192236 -41324801 - B1_Mur2 SINE Alu -17 132 1 3 1410 403 273 36 9 chr6 108192300 108192411 -41324626 - RSINE1 SINE B4 -6 159 46 3 1410 237 269 24 49 chr6 108192480 108192562 -41324475 - tRNA-Leu-TTA tRNA tRNA -4 82 3 3 1410 597 223 113 13 chr6 108193184 108193343 -41323694 - MER5B DNA MER1_type -3 175 1 3 1410 885 212 81 32 chr6 108193686 108193934 -41323103 - L1MA8 LINE L1 -176 6115 5856 3 1410 787 260 57 105 chr6 108195117 108195254 -41321783 + L1MA6 LINE L1 5826 5959 -341 3 1410 321 164 0 0 chr6 108195254 108195309 -41321728 + Lx3B LINE L1 6919 6973 0 3 1410 787 260 57 105 chr6 108195309 108195541 -41321496 + L1MA6 LINE L1 5960 6177 -123 3 1410 234 289 78 0 chr6 108195627 108195717 -41321320 + L1MA6 LINE L1 6164 6260 -40 3 1410 409 165 45 18 chr6 108197056 108197167 -41319870 + PB1D7 SINE Alu 1 114 -6 3 1410 527 233 19 76 chr6 108197496 108197654 -41319383 + B1_Mur3 SINE Alu 1 149 0 3 1410 268 254 0 0 chr6 108197821 108197884 -41319153 - MIRc SINE MIR -104 164 102 3 1410 495 102 0 0 chr6 108198449 108198537 -41318500 + (CAGG)n Simple_repeat Simple_repeat 2 89 0 3 1410 427 325 86 0 chr6 108200876 108201055 -41315982 - MIR SINE MIR -55 207 17 3 1410 244 243 95 19 chr6 108201491 108201596 -41315441 + ORR1B1 LTR MaLR 18 130 -248 3 1410 226 366 35 11 chr6 108202977 108203132 -41313905 + MIRc SINE MIR 2 158 -104 3 1410 741 168 49 7 chr6 108203350 108203494 -41313543 - B1_Mur4 SINE Alu 0 150 1 3 1410 228 67 0 0 chr6 108205178 108205208 -41311829 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 3 1410 370 284 61 28 chr6 108206508 108206689 -41310348 + MLT1D LTR MaLR 22 208 -297 3 1410 570 29 0 0 chr6 108206792 108206860 -41310177 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1410 241 337 21 21 chr6 108206870 108206967 -41310070 - B4A SINE B4 -3 289 193 3 1410 298 290 69 0 chr6 108207124 108207255 -41309782 - L1M5 LINE L1 -3133 3013 2874 3 1410 954 257 16 20 chr6 108207286 108207536 -41309501 - B4 SINE B4 0 292 44 3 1410 267 54 0 0 chr6 108207868 108207905 -41309132 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1410 207 0 0 0 chr6 108207972 108207995 -41309042 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1410 24 53 0 0 chr6 108209082 108209120 -41307917 + AT_rich Low_complexity Low_complexity 1 38 0 3 1410 270 81 0 0 chr6 108210535 108210572 -41306465 + (TCCG)n Simple_repeat Simple_repeat 2 38 0 3 1410 301 253 63 0 chr6 108210932 108211027 -41306010 - ORR1D1 LTR MaLR 0 374 274 3 1410 762 139 14 55 chr6 108212078 108212223 -41304814 + B1_Mm SINE Alu 9 147 0 3 1410 271 322 60 60 chr6 108212818 108212933 -41304104 - B3A SINE B2 -14 184 8 3 1410 275 229 0 16 chr6 108212933 108212995 -41304042 - B4A SINE B4 -225 67 7 3 1410 277 321 0 0 chr6 108213079 108213160 -41303877 - ID4_ SINE ID -1 82 2 3 1410 1098 82 0 7 chr6 108213268 108213416 -41303621 - B1_Mus2 SINE Alu 0 147 1 3 1410 698 232 14 0 chr6 108214533 108214675 -41302362 - B1_Mur1 SINE Alu -2 147 4 3 1410 288 0 0 0 chr6 108214690 108214722 -41302315 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 3 1410 338 372 60 7 chr6 108214824 108214973 -41302064 + RSINE1 SINE B4 3 159 -6 3 1410 351 0 0 0 chr6 108215036 108215075 -41301962 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1410 931 262 25 12 chr6 108215075 108215315 -41301722 - B4A SINE B4 -49 243 1 3 1410 1008 167 17 83 chr6 108215320 108215561 -41301476 - URR1B DNA MER1_type 0 225 1 3 1410 39878 69 1 22 chr6 108215879 108223199 -41293838 - L1Md_T LINE L1 0 6582 99 3 1410 498 284 94 10 chr6 108225325 108225517 -41291520 - B3 SINE B2 -7 209 2 3 1410 222 118 0 0 chr6 108225934 108225968 -41291069 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 3 1410 216 171 0 0 chr6 108226002 108226037 -41291000 - ID4_ SINE ID -44 39 5 3 1410 261 146 0 0 chr6 108226473 108226521 -41290516 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1410 436 335 54 21 chr6 108226554 108226740 -41290297 - B4A SINE B4 -14 278 87 3 1410 1363 292 64 31 chr6 108228335 108229010 -41288027 - L1MC1 LINE L1 -5 6328 5632 3 1410 186 292 30 15 chr6 108229101 108229167 -41287870 - MIRc SINE MIR -156 112 46 3 1410 24 67 0 0 chr6 108229945 108229990 -41287047 + AT_rich Low_complexity Low_complexity 1 45 0 3 1410 224 77 0 25 chr6 108231912 108231952 -41285085 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1410 1266 27 0 0 chr6 108233199 108233345 -41283692 + B1_Mm SINE Alu 2 147 0 3 1410 222 37 0 0 chr6 108233345 108233372 -41283665 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1410 535 213 15 66 chr6 108233611 108233747 -41283290 - RSINE1 SINE B4 -36 129 1 3 1410 577 217 126 39 chr6 108233763 108233945 -41283092 - B3A SINE B2 0 198 1 3 1410 411 299 70 122 chr6 108234306 108234634 -41282403 - ORR1E LTR MaLR -46 313 3 3 1410 1705 235 69 115 chr6 108234658 108235299 -41281738 - RMER19C LTR ERVK 0 611 1 3 1410 657 247 39 7 chr6 108235308 108235463 -41281574 + B3 SINE B2 1 160 -56 4 1410 409 101 51 0 chr6 108235496 108235575 -41281462 + GA-rich Low_complexity Low_complexity 4 86 0 4 1410 685 55 0 0 chr6 108236959 108237050 -41279987 + B1_Mm SINE Alu 48 138 -9 4 1410 222 37 0 0 chr6 108237050 108237077 -41279960 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1410 243 323 140 13 chr6 108237770 108237927 -41279110 + MIR SINE MIR 42 218 -44 4 1410 385 284 44 25 chr6 108240465 108240624 -41276413 - RSINE1 SINE B4 -3 162 1 4 1410 568 246 0 92 chr6 108241164 108241348 -41275689 + RMER30 DNA MER1_type 5 171 -31 4 1410 21 36 0 0 chr6 108241436 108241464 -41275573 + AT_rich Low_complexity Low_complexity 1 28 0 4 1410 185 325 180 16 chr6 108242432 108242682 -41274355 + L2 LINE L2 2198 2488 -931 4 1410 347 226 39 32 chr6 108243410 108243549 -41273488 - PB1D10 SINE Alu 0 149 1 4 1410 669 254 154 63 chr6 108243551 108243946 -41273091 - L1MB2 LINE L1 -233 5938 5508 4 1410 213 121 0 0 chr6 108243973 108244006 -41273031 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 4 1410 213 235 0 0 chr6 108244035 108244086 -41272951 + T-rich Low_complexity Low_complexity 1 51 0 4 1410 180 340 50 62 chr6 108244187 108244347 -41272690 + L2 LINE L2 2604 2761 -658 4 1410 333 324 0 10 chr6 108246154 108246257 -41270780 - PB1D10 SINE Alu -5 112 11 4 1410 519 256 87 53 chr6 108246744 108246950 -41270087 + B3 SINE B2 2 214 -2 4 1410 243 0 0 0 chr6 108246968 108246995 -41270042 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1410 1220 54 0 13 chr6 108246996 108247136 -41269901 + B1_Mus1 SINE Alu 1 140 -8 4 1410 243 61 0 0 chr6 108247136 108247169 -41269868 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1410 540 0 0 0 chr6 108247298 108247358 -41269679 + (CTG)n Simple_repeat Simple_repeat 1 60 0 4 1410 878 73 0 8 chr6 108247358 108247482 -41269555 + (TTCTCC)n Simple_repeat Simple_repeat 5 127 0 4 1410 6017 102 45 27 chr6 108247488 108248401 -41268636 - Lx LINE L1 -8 6646 5718 4 1410 502 318 55 23 chr6 108248434 108248653 -41268384 + B4A SINE B4 5 230 -62 4 1410 732 212 81 12 chr6 108248654 108248826 -41268211 - L1_Rod LINE L1 -129 5718 5535 4 1410 277 144 120 22 chr6 108248851 108248943 -41268094 + Lx9 LINE L1 7544 7644 0 4 1410 264 149 0 0 chr6 108248964 108249011 -41268026 + (TAA)n Simple_repeat Simple_repeat 3 49 0 4 1410 312 173 427 0 chr6 108249788 108249863 -41267174 - PB1D10 SINE Alu -6 111 5 4 1410 308 365 58 19 chr6 108250556 108250763 -41266274 - B4A SINE B4 -75 217 3 4 1410 688 323 52 36 chr6 108251251 108251354 -41265683 + MTEa LTR MaLR 69 175 -204 4 1410 2476 81 75 3 chr6 108251354 108251712 -41265325 + Lx LINE L1 6270 6653 -1 4 1410 688 323 52 36 chr6 108251712 108251913 -41265124 + MTEa LTR MaLR 176 378 -1 4 1410 1472 171 150 11 chr6 108252188 108252549 -41264488 + MTD LTR MaLR 1 411 -8 4 1410 831 286 80 0 chr6 108253072 108253383 -41263654 - MER2 DNA MER2_type -9 336 1 4 1410 198 0 0 0 chr6 108254636 108254658 -41262379 + (TGG)n Simple_repeat Simple_repeat 3 24 0 4 1410 260 52 16 65 chr6 108256819 108256881 -41260156 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 4 1410 225 139 0 0 chr6 108257870 108257913 -41259124 + (CCTG)n Simple_repeat Simple_repeat 4 46 0 4 1410 601 318 8 97 chr6 108258689 108258957 -41258080 - B4 SINE B4 0 292 49 4 1410 356 257 28 37 chr6 108259926 108260035 -41257002 + B4 SINE B4 3 110 -182 4 1410 450 0 0 0 chr6 108260774 108260824 -41256213 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1410 200 328 39 39 chr6 108261331 108261509 -41255528 + L2c LINE L2 2911 3088 -299 4 1410 195 310 17 0 chr6 108261695 108261753 -41255284 + L2c LINE L2 3325 3383 -43 4 1410 287 214 57 0 chr6 108261789 108261859 -41255178 + ID4 SINE ID 6 79 -4 4 1410 186 43 0 0 chr6 108262038 108262061 -41254976 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1410 186 43 0 0 chr6 108262619 108262642 -41254395 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 1410 251 271 0 0 chr6 108263878 108263937 -41253100 + ID2 SINE ID 11 69 -14 4 1411 398 221 98 8 chr6 108265659 108265782 -41251255 - B4A SINE B4 -42 250 117 4 1411 294 347 53 68 chr6 108266520 108266783 -41250254 - MER102b DNA MER1_type -44 297 39 4 1411 273 326 85 11 chr6 108267980 108268157 -41248880 - MLT1A1 LTR MaLR -218 190 1 4 1411 1581 242 72 31 chr6 108269253 108269697 -41247340 - Lx9 LINE L1 -280 7364 6903 4 1411 222 62 0 0 chr6 108269824 108269856 -41247181 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4 1411 259 305 133 2 chr6 108269900 108270163 -41246874 + L1MB7 LINE L1 5191 5501 -677 4 1411 317 296 0 0 chr6 108270168 108270239 -41246798 + ID4_ SINE ID 3 73 -10 4 1411 913 306 141 35 chr6 108270348 108270971 -41246066 + L1MB7 LINE L1 5480 6168 -16 4 1411 318 344 16 0 chr6 108271410 108271538 -41245499 - ID_B1 SINE B4 0 224 95 4 1411 303 264 132 0 chr6 108271869 108271998 -41245039 + L1MC4 LINE L1 7385 7530 -512 4 1411 203 250 105 53 chr6 108273597 108273673 -41243364 + MER5A DNA MER1_type 3 82 -107 4 1411 1238 248 95 11 chr6 108274432 108274779 -41242258 - MTEb LTR MaLR -3 376 1 4 1411 1260 311 75 48 chr6 108275318 108276175 -41240862 + L1_Mur3 LINE L1 4874 5753 -127 4 1411 217 269 0 0 chr6 108278029 108278081 -41238956 + (TA)n Simple_repeat Simple_repeat 1 52 0 4 1411 261 0 0 0 chr6 108278847 108278876 -41238161 + (CCA)n Simple_repeat Simple_repeat 1 29 0 4 1411 711 274 9 122 chr6 108280196 108280524 -41236513 - B4A SINE B4 0 292 2 4 1411 431 306 0 76 chr6 108281949 108282094 -41234943 - RSINE1 SINE B4 -31 134 1 4 1411 281 230 157 20 chr6 108282094 108282196 -41234841 - Cheshire DNA MER1_type -32 2388 2273 4 1411 423 282 83 21 chr6 108282202 108282347 -41234690 - Cheshire DNA MER1_type -2241 179 26 4 1411 222 260 29 86 chr6 108283128 108283233 -41233804 + L2a LINE L2 2397 2495 -924 4 1411 674 269 47 1 chr6 108283287 108283483 -41233554 + B3A SINE B2 1 212 -4 4 1411 180 111 0 0 chr6 108283726 108283753 -41233284 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1411 336 333 36 14 chr6 108283783 108283923 -41233114 - B4A SINE B4 -145 147 5 4 1411 243 267 0 0 chr6 108283967 108284027 -41233010 + L2a LINE L2 3026 3085 -341 4 1411 580 241 98 12 chr6 108284038 108284202 -41232835 - MTEa LTR MaLR 0 379 202 4 1411 282 214 100 0 chr6 108284221 108284291 -41232746 - MTEa LTR MaLR -302 77 1 4 1411 206 267 92 37 chr6 108284537 108284646 -41232391 + L2a LINE L2 3253 3367 -20 4 1411 300 120 0 0 chr6 108285266 108285316 -41231721 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1411 502 325 72 16 chr6 108286155 108286349 -41230688 + B3A SINE B2 3 207 -9 4 1411 337 248 70 17 chr6 108286361 108286476 -41230561 + Lx8 LINE L1 7353 7473 0 4 1411 488 325 37 84 chr6 108288284 108288606 -41228431 - ORR1E LTR MaLR -9 350 44 4 1411 355 297 112 9 chr6 108288694 108288908 -41228129 - Charlie7 DNA MER1_type -2018 594 359 4 1411 232 70 0 0 chr6 108289040 108289083 -41227954 - L1Md_F2 LINE L1 0 6582 6540 4 1411 492 18 0 0 chr6 108289736 108289793 -41227244 + (CAT)n Simple_repeat Simple_repeat 3 59 0 4 1411 591 215 158 0 chr6 108289800 108289958 -41227079 - B3 SINE B2 -24 192 10 4 1411 274 345 65 65 chr6 108290075 108290292 -41226745 + MIR SINE MIR 45 261 -1 4 1411 180 346 48 0 chr6 108290539 108290643 -41226394 + L2a LINE L2 3263 3371 -55 4 1411 276 346 45 0 chr6 108291333 108291466 -41225571 + L2a LINE L2 3282 3420 -6 4 1411 813 40 0 0 chr6 108291526 108291627 -41225410 + (CTG)n Simple_repeat Simple_repeat 1 101 0 4 1411 1052 119 0 6 chr6 108291627 108291796 -41225241 + (TTC)n Simple_repeat Simple_repeat 2 169 0 4 1411 948 111 14 0 chr6 108291796 108291940 -41225097 - B1_Mus1 SINE Alu -2 146 1 4 1411 181 132 0 156 chr6 108292052 108292097 -41224940 - L2c LINE L2 -226 3161 3124 4 1411 354 282 93 65 chr6 108292624 108292840 -41224197 - MER20B DNA MER1_type -510 273 52 4 1411 265 315 60 33 chr6 108293158 108293309 -41223728 - MER102a DNA MER1_type -101 229 75 4 1411 621 0 0 0 chr6 108293516 108293585 -41223452 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1411 192 152 0 0 chr6 108293585 108293618 -41223419 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1411 224 246 0 28 chr6 108293618 108293689 -41223348 + GA-rich Low_complexity Low_complexity 2 70 0 4 1411 298 271 11 34 chr6 108295584 108295655 -41221382 - B4 SINE B4 -4 288 219 4 1411 968 0 9 0 chr6 108295655 108295767 -41221270 + (TTCTC)n Simple_repeat Simple_repeat 2 114 0 4 1411 298 271 11 34 chr6 108295767 108295783 -41221254 - B4 SINE B4 -74 218 203 4 1411 2399 145 82 5 chr6 108296340 108296729 -41220308 - MTC LTR MaLR 0 421 3 4 1411 180 111 0 0 chr6 108296906 108296933 -41220104 + (TTC)n Simple_repeat Simple_repeat 2 28 0 4 1411 1284 182 101 71 chr6 108297691 108297874 -41219163 - ORR1C1 LTR MaLR 0 378 165 4 1411 783 94 0 0 chr6 108297874 108298001 -41219036 + (GA)n Simple_repeat Simple_repeat 2 128 0 4 1411 1284 182 101 71 chr6 108298001 108298184 -41218853 - ORR1C1 LTR MaLR -214 164 2 4 1411 219 229 164 0 chr6 108298203 108298264 -41218773 + ID4 SINE ID 3 73 -10 4 1411 255 31 0 0 chr6 108299281 108299313 -41217724 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1411 284 120 0 20 chr6 108300076 108300127 -41216910 + (TATG)n Simple_repeat Simple_repeat 3 52 0 4 1411 217 379 56 8 chr6 108300127 108300252 -41216785 - B1_Mur1 SINE Alu -1 148 18 4 1411 23 68 0 0 chr6 108300273 108300317 -41216720 + AT_rich Low_complexity Low_complexity 1 44 0 4 1411 450 268 56 16 chr6 108300646 108300771 -41216266 - B1F SINE Alu -19 130 1 4 1411 243 0 0 0 chr6 108302870 108302897 -41214140 + (ACTG)n Simple_repeat Simple_repeat 2 28 0 4 1411 423 52 0 0 chr6 108302897 108302954 -41214083 + (TATG)n Simple_repeat Simple_repeat 3 60 0 4 1411 679 270 90 36 chr6 108303091 108303368 -41213669 + B4A SINE B4 1 292 0 4 1411 481 267 14 22 chr6 108303715 108303853 -41213184 + B3 SINE B2 80 216 0 4 1411 1007 65 72 0 chr6 108303872 108304010 -41213027 + B1_Mus1 SINE Alu 1 148 0 5 1411 734 73 18 0 chr6 108304033 108304142 -41212895 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 5 1411 462 36 0 0 chr6 108304322 108304378 -41212659 + (TAA)n Simple_repeat Simple_repeat 2 57 0 5 1411 498 17 0 0 chr6 108304774 108304833 -41212204 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1411 288 0 0 0 chr6 108304833 108304864 -41212173 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1411 259 381 17 8 chr6 108305260 108305379 -41211658 + MIRm SINE MIR 16 135 -141 5 1411 554 261 102 104 chr6 108305727 108306044 -41210993 - ORR1E LTR MaLR 0 379 36 5 1411 396 71 0 0 chr6 108306592 108306648 -41210389 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1411 569 283 166 34 chr6 108306914 108307269 -41209768 + Lx8 LINE L1 7072 7473 0 5 1411 286 296 119 0 chr6 108308373 108308532 -41208505 - L1M5 LINE L1 -407 5757 5580 5 1411 297 298 14 1 chr6 108308542 108308623 -41208414 + B1F SINE Alu 9 89 -60 5 1411 238 225 0 63 chr6 108309343 108309533 -41207504 + GA-rich Low_complexity Low_complexity 1 178 0 5 1411 229 346 0 10 chr6 108309551 108309653 -41207384 + GA-rich Low_complexity Low_complexity 2 102 0 5 1411 192 40 0 0 chr6 108310061 108310086 -41206951 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 5 1411 542 260 123 6 chr6 108310228 108310398 -41206639 + B3 SINE B2 27 216 0 5 1411 235 273 0 29 chr6 108310496 108310564 -41206473 - L1MEf LINE L1 -4374 2026 1961 5 1411 277 291 162 15 chr6 108310799 108310935 -41206102 - L1MEf LINE L1 -4566 1849 1694 5 1411 399 280 106 22 chr6 108310958 108311137 -41205900 - L1MB7 LINE L1 -4 6174 5981 5 1411 245 191 40 22 chr6 108311352 108311430 -41205607 - MLT1A0 LTR MaLR -314 94 10 5 1411 487 285 50 6 chr6 108311443 108311623 -41205414 - L1MB7 LINE L1 -318 5866 5679 5 1411 21 0 0 0 chr6 108311868 108311889 -41205148 + GC_rich Low_complexity Low_complexity 1 21 0 5 1411 227 200 0 0 chr6 108312505 108312545 -41204492 - BC1_Mm scRNA scRNA -98 54 15 5 1411 425 272 316 5 chr6 108313033 108313251 -41203786 + B4A SINE B4 1 286 -6 5 1411 604 160 28 9 chr6 108314179 108314286 -41202751 - PB1D9 SINE Alu -5 115 7 5 1411 552 42 0 0 chr6 108314289 108314360 -41202677 + (CATA)n Simple_repeat Simple_repeat 3 73 0 5 1411 348 162 0 0 chr6 108314398 108314466 -41202571 - PB1D10 SINE Alu -7 110 43 5 1411 1127 56 0 7 chr6 108316509 108316653 -41200384 - B1_Mus2 SINE Alu 0 147 5 5 1411 254 337 32 0 chr6 108316927 108317022 -41200015 + MIRb SINE MIR 47 144 -124 5 1411 322 257 0 157 chr6 108317957 108318091 -41198946 - PB1 SINE Alu 0 127 15 5 1411 821 219 109 0 chr6 108319357 108319540 -41197497 + B3 SINE B2 1 203 -13 5 1411 259 302 88 92 chr6 108319577 108319839 -41197198 + B4A SINE B4 2 262 -30 5 1411 441 0 0 0 chr6 108319877 108319926 -41197111 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1411 717 181 34 34 chr6 108320180 108320329 -41196708 + B1_Mur4 SINE Alu 1 149 -1 5 1411 611 184 323 0 chr6 108320545 108320703 -41196334 - B3 SINE B2 -5 211 3 5 1411 555 221 0 9 chr6 108320799 108320913 -41196124 - PB1D9 SINE Alu -2 118 6 5 1411 214 203 83 17 chr6 108321044 108321104 -41195933 - MIRb SINE MIR -95 173 110 5 1411 3073 307 46 65 chr6 108321626 108323283 -41193754 - Lx8 LINE L1 -506 7138 5644 5 1411 397 54 0 0 chr6 108323287 108323343 -41193694 - URR1B DNA MER1_type 0 225 170 5 1411 248 148 223 19 chr6 108323364 108323467 -41193570 - L1M4 LINE L1 -846 5300 5177 5 1411 205 75 75 0 chr6 108323520 108323560 -41193477 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 5 1411 697 286 58 15 chr6 108328483 108328810 -41188227 - L1MC1 LINE L1 -104 6229 5889 5 1411 1118 76 7 0 chr6 108330710 108330855 -41186182 + B1_Mus1 SINE Alu 2 147 -1 5 1411 1407 76 38 0 chr6 108332583 108332768 -41184269 + B2_Mm2 SINE B2 2 193 -2 5 1411 421 314 51 0 chr6 108332847 108332984 -41184053 + RSINE1 SINE B4 3 146 -19 5 1411 234 241 23 11 chr6 108333019 108333107 -41183930 + (TTA)n Simple_repeat Simple_repeat 2 90 0 5 1411 557 280 64 15 chr6 108333262 108333465 -41183572 - MER20 DNA MER1_type 0 219 7 5 1411 1003 134 62 0 chr6 108333923 108334102 -41182935 + URR1B DNA MER1_type 36 225 0 5 1411 487 269 117 15 chr6 108335128 108335324 -41181713 - B3 SINE B2 0 216 1 5 1411 3694 38 7 4 chr6 108335538 108335990 -41181047 - L1Md_F2 LINE L1 -1 6581 6129 5 1411 850 277 0 9 chr6 108340092 108340307 -41176730 + B3 SINE B2 1 213 -3 5 1411 216 0 0 0 chr6 108340376 108340400 -41176637 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1411 198 0 0 0 chr6 108343002 108343024 -41174013 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1411 3065 88 2 0 chr6 108345377 108345776 -41171261 - MTB LTR MaLR 0 400 1 5 1411 426 151 0 0 chr6 108346519 108346592 -41170445 + T-rich Low_complexity Low_complexity 1 73 0 5 1411 1406 212 68 49 chr6 108346637 108347048 -41169989 - MTD LTR MaLR 0 419 1 5 1411 270 81 0 0 chr6 108347777 108347814 -41169223 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1411 254 205 90 0 chr6 108350029 108350107 -41166930 - RLTR12B LTR ERVK -29 499 415 5 1411 375 305 32 26 chr6 108350526 108350681 -41166356 + L1M5 LINE L1 5112 5267 -879 5 1411 699 259 24 75 chr6 108350859 108351072 -41165965 + B3 SINE B2 4 205 -11 5 1411 602 205 63 0 chr6 108352678 108352805 -41164232 - B1F SINE Alu -14 135 1 5 1411 677 236 57 0 chr6 108353927 108354067 -41162970 + B1F SINE Alu 1 148 -1 5 1411 961 230 51 35 chr6 108354134 108354456 -41162581 - Lx9 LINE L1 -1639 6005 5671 5 1411 303 298 80 47 chr6 108354786 108355061 -41161976 - L1MB7 LINE L1 -232 5952 5669 5 1411 252 77 0 0 chr6 108355526 108355565 -41161472 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1411 774 285 88 31 chr6 108356354 108356673 -41160364 - MER2 DNA MER2_type -1 344 8 5 1411 436 301 27 14 chr6 108356876 108357024 -41160013 + RSINE1 SINE B4 3 152 -13 5 1411 276 102 0 0 chr6 108357028 108357077 -41159960 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 5 1411 200 366 12 0 chr6 108357504 108357586 -41159451 + MIRb SINE MIR 36 118 -150 5 1411 510 196 9 18 chr6 108357632 108357741 -41159296 - ID_B1 SINE B4 -2 222 115 5 1411 409 164 214 8 chr6 108357638 108357755 -41159282 - B1F1 SINE Alu -8 141 1 5 1411 247 314 28 19 chr6 108357785 108357892 -41159145 + MIRb SINE MIR 156 263 -5 5 1411 220 238 60 29 chr6 108358657 108358768 -41158269 + MIRc SINE MIR 150 262 -6 5 1411 286 91 45 0 chr6 108359711 108359769 -41157268 + B1_Mm SINE Alu 89 149 0 5 1411 21 0 0 0 chr6 108359769 108359790 -41157247 + AT_rich Low_complexity Low_complexity 1 21 0 5 1411 467 235 10 10 chr6 108359797 108359900 -41157137 + RSINE1 SINE B4 3 105 -60 5 1411 295 247 26 0 chr6 108361416 108361493 -41155544 - ID4_ SINE ID -3 80 2 5 1411 219 152 0 0 chr6 108362056 108362102 -41154935 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1411 640 286 61 38 chr6 108362904 108363246 -41153791 - L1MD3 LINE L1 -14 7981 7632 5 1411 365 372 48 18 chr6 108364144 108364371 -41152666 - MLT1G3 LTR MaLR -288 307 74 5 1411 334 185 0 36 chr6 108365262 108365402 -41151635 + CT-rich Low_complexity Low_complexity 1 135 0 5 1411 324 0 0 0 chr6 108367366 108367402 -41149635 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 5 1411 430 174 217 0 chr6 108368886 108369001 -41148036 + B1_Mur4 SINE Alu 10 149 -1 5 1411 348 24 0 0 chr6 108369010 108369051 -41147986 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1411 802 239 21 26 chr6 108369102 108369295 -41147742 + ID_B1 SINE B4 22 213 -11 5 1411 207 339 90 45 chr6 108370813 108370946 -41146091 - MIRb SINE MIR -90 178 40 5 1411 21 0 0 0 chr6 108375314 108375335 -41141702 + GC_rich Low_complexity Low_complexity 1 21 0 5 1411 192 77 0 0 chr6 108378403 108378429 -41138608 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 1411 413 307 98 34 chr6 108380864 108381100 -41135937 - MTEa LTR MaLR -22 357 107 5 1411 551 92 27 9 chr6 108383556 108383666 -41133371 + (TA)n Simple_repeat Simple_repeat 2 113 0 5 1411 288 0 0 0 chr6 108384175 108384207 -41132830 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1411 183 329 38 0 chr6 108384248 108384327 -41132710 + MIR SINE MIR 75 156 -106 5 1411 192 135 0 0 chr6 108384487 108384524 -41132513 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1411 192 97 0 0 chr6 108385326 108385357 -41131680 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1411 227 324 74 27 chr6 108387134 108387283 -41129754 - L1MC5 LINE L1 -44 7917 7762 5 1411 1075 144 51 33 chr6 108387343 108387558 -41129479 - URR1B DNA MER1_type -6 219 1 5 1411 415 295 19 0 chr6 108387682 108387787 -41129250 + ID_B1 SINE B4 84 190 -34 5 1411 246 32 0 0 chr6 108388054 108388085 -41128952 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 5 1411 710 68 0 33 chr6 108388981 108389103 -41127934 + (TA)n Simple_repeat Simple_repeat 2 119 0 5 1411 700 299 10 38 chr6 108389230 108389439 -41127598 + B3 SINE B2 9 211 -5 5 1411 258 32 0 0 chr6 108390103 108390134 -41126903 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 5 1411 1163 52 0 0 chr6 108391159 108391294 -41125743 + B1_Mm SINE Alu 2 136 -11 5 1411 222 37 0 0 chr6 108391294 108391321 -41125716 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1411 25 31 0 0 chr6 108391334 108391366 -41125671 + AT_rich Low_complexity Low_complexity 1 32 0 5 1411 509 291 58 41 chr6 108391408 108391580 -41125457 - B3 SINE B2 -3 213 39 5 1411 341 311 19 19 chr6 108391719 108391824 -41125213 - PB1 SINE Alu -2 125 21 6 1411 417 200 140 0 chr6 108391886 108391986 -41125051 - B1F SINE Alu 0 149 36 6 1411 252 0 0 0 chr6 108392761 108392789 -41124248 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1411 198 71 0 0 chr6 108392984 108393012 -41124025 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 6 1411 742 213 0 28 chr6 108393339 108393484 -41123553 + B1_Mur2 SINE Alu 2 142 -7 6 1411 246 326 0 42 chr6 108393622 108393718 -41123319 + BC1_Mm scRNA scRNA 20 111 -41 6 1411 726 96 0 0 chr6 108394166 108394270 -41122767 + (GA)n Simple_repeat Simple_repeat 1 104 0 6 1411 404 320 64 48 chr6 108395759 108396054 -41120983 + L1ME1 LINE L1 5855 6154 -25 6 1412 422 261 181 96 chr6 108396602 108396801 -41120236 - B3 SINE B2 0 216 1 6 1412 245 274 226 15 chr6 108399729 108399866 -41117171 + B4A SINE B4 1 166 -126 6 1412 181 182 0 0 chr6 108399994 108400027 -41117010 + L3 LINE CR1 2157 2189 -2300 6 1412 1138 169 39 0 chr6 108400472 108400679 -41116358 + B3 SINE B2 2 216 0 6 1412 505 296 86 0 chr6 108400875 108401027 -41116010 + MER58A DNA MER1_type 3 167 -57 6 1412 195 344 75 50 chr6 108401690 108401889 -41115148 + L2 LINE L2 2250 2453 -966 6 1412 208 411 7 7 chr6 108403005 108403157 -41113880 - MIR SINE MIR 0 262 111 6 1412 206 358 89 0 chr6 108403618 108403741 -41113296 - MIRc SINE MIR -126 142 9 6 1412 1394 186 160 74 chr6 108405484 108405890 -41111147 + RMER10A LTR ERVL 1 441 -1 6 1412 218 103 28 42 chr6 108406031 108406102 -41110935 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 6 1412 222 286 32 0 chr6 108407105 108407168 -41109869 + ID2 SINE ID 4 68 -15 6 1412 248 70 23 0 chr6 108407429 108407472 -41109565 + (TGGGGG)n Simple_repeat Simple_repeat 4 47 0 6 1412 22 35 0 0 chr6 108407497 108407526 -41109511 + AT_rich Low_complexity Low_complexity 1 29 0 6 1412 245 236 34 179 chr6 108409459 108409611 -41107426 - MIRb SINE MIR -61 215 86 6 1412 2948 52 38 0 chr6 108410803 108411171 -41105866 - L1Md_F2 LINE L1 -12 6570 6189 6 1412 351 268 0 110 chr6 108411603 108411731 -41105306 - B1F1 SINE Alu -2 118 4 6 1412 434 320 13 13 chr6 108412439 108412588 -41104449 - B1_Mur2 SINE Alu 0 149 1 6 1412 610 284 20 74 chr6 108412733 108412935 -41104102 + B3A SINE B2 3 193 -5 6 1412 237 303 74 79 chr6 108413424 108413608 -41103429 - MIRc SINE MIR -87 181 2 6 1412 315 281 156 0 chr6 108414035 108414170 -41102867 + MIR SINE MIR 76 231 -31 6 1412 1233 203 230 9 chr6 108415406 108415749 -41101288 - MTD LTR MaLR 0 419 1 6 1412 307 343 78 39 chr6 108416708 108417128 -41099909 - MLT1D LTR MaLR -13 492 19 6 1412 1242 256 75 9 chr6 108421438 108421785 -41095252 - MTEb LTR MaLR -1 378 9 6 1412 346 293 182 13 chr6 108422048 108422207 -41094830 - MER20 DNA MER1_type -3 216 31 6 1412 292 344 70 53 chr6 108422486 108422713 -41094324 - ORR1E LTR MaLR -126 233 3 6 1412 432 257 8 34 chr6 108422714 108422831 -41094206 - MIR SINE MIR -37 225 112 6 1412 224 344 31 20 chr6 108422902 108423000 -41094037 + MIR SINE MIR 155 253 -9 6 1412 188 310 17 0 chr6 108423057 108423115 -41093922 - MIRm SINE MIR -100 176 118 6 1412 342 0 0 0 chr6 108426095 108426133 -41090904 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1412 326 291 94 61 chr6 108427621 108427833 -41089204 - L2c LINE L2 -225 3162 2944 6 1412 9412 3 0 1 chr6 108428360 108430091 -41086946 - L1Md_A LINE L1 0 6582 4853 6 1412 411 73 0 0 chr6 108430285 108430340 -41086697 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1412 1122 264 79 0 chr6 108430554 108430819 -41086218 + B4A SINE B4 7 292 0 6 1412 234 0 0 0 chr6 108431939 108431965 -41085072 + (TTC)n Simple_repeat Simple_repeat 2 27 0 6 1412 183 42 0 0 chr6 108433401 108433425 -41083612 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 1412 257 306 49 39 chr6 108434758 108434860 -41082177 + MER2 DNA MER2_type 156 258 -87 6 1412 234 96 7 144 chr6 108435584 108435872 -41081165 + (TGAG)n Simple_repeat Simple_repeat 1 248 0 6 1412 346 338 13 32 chr6 108435938 108436094 -41080943 + MIRb SINE MIR 85 237 -31 6 1412 256 146 0 0 chr6 108436131 108436172 -41080865 - ID4 SINE ID -39 44 4 6 1412 488 278 9 9 chr6 108436232 108436348 -41080689 - ID_B1 SINE B4 -11 213 98 6 1412 215 303 181 39 chr6 108437738 108437865 -41079172 + MIR SINE MIR 45 189 -73 6 1412 612 249 183 0 chr6 108439567 108439736 -41077301 + ID_B1 SINE B4 4 203 -21 6 1412 775 292 66 73 chr6 108440195 108440483 -41076554 + B4 SINE B4 2 287 -5 6 1412 429 322 106 11 chr6 108442616 108442804 -41074233 - MER3 DNA MER1_type -1 208 3 6 1412 26 30 0 0 chr6 108443152 108443185 -41073852 + AT_rich Low_complexity Low_complexity 1 33 0 6 1412 1155 69 7 0 chr6 108443240 108443385 -41073652 + B1_Mus2 SINE Alu 1 146 -1 6 1412 208 135 0 0 chr6 108443387 108443424 -41073613 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1412 998 237 5 5 chr6 108445336 108445552 -41071485 + B3 SINE B2 1 216 0 6 1412 266 270 148 67 chr6 108446329 108446464 -41070573 - MLT1D LTR MaLR -8 497 352 6 1412 264 229 0 116 chr6 108446493 108446562 -41070475 - MLT1D LTR MaLR -415 90 28 6 1412 773 325 116 32 chr6 108446581 108447013 -41070024 - MLT1F2 LTR MaLR -28 532 65 6 1412 794 265 24 5 chr6 108447711 108447923 -41069114 + ID_B1 SINE B4 3 218 -6 6 1412 307 238 22 56 chr6 108449258 108449347 -41067690 - PB1D10 SINE Alu -2 115 30 6 1412 707 186 262 0 chr6 108449373 108449545 -41067492 - MTD LTR MaLR -9 410 194 6 1412 26 50 0 0 chr6 108449649 108449689 -41067348 + AT_rich Low_complexity Low_complexity 1 40 0 6 1412 874 195 92 0 chr6 108449717 108449891 -41067146 - MTD LTR MaLR -229 190 1 6 1412 324 0 0 0 chr6 108451078 108451114 -41065923 + (TATG)n Simple_repeat Simple_repeat 2 37 0 6 1412 258 303 13 0 chr6 108452076 108452152 -41064885 + ID4 SINE ID 5 81 -2 6 1412 472 271 81 42 chr6 108452441 108452763 -41064274 - L1MC5 LINE L1 0 8042 7641 6 1412 183 80 0 0 chr6 108452927 108452952 -41064085 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1412 436 206 144 0 chr6 108452953 108453050 -41063987 + B1_Mur2 SINE Alu 24 134 -15 6 1412 807 291 128 54 chr6 108453185 108453930 -41063107 + L1ME1 LINE L1 5270 6069 -110 6 1412 489 291 109 22 chr6 108454335 108454518 -41062519 - B4A SINE B4 -3 289 91 6 1412 838 178 204 11 chr6 108455290 108455466 -41061571 + B3 SINE B2 1 210 -6 6 1412 201 161 0 0 chr6 108455470 108455501 -41061536 + polypurine Low_complexity Low_complexity 2 32 0 6 1412 224 211 38 19 chr6 108455513 108455566 -41061471 + ID4 SINE ID 2 55 -28 6 1412 522 222 42 8 chr6 108456862 108456980 -41060057 - B1F SINE Alu -22 127 6 6 1412 1275 179 116 68 chr6 108457714 108458068 -41058969 - ORR1D1 LTR MaLR 0 374 4 6 1412 981 205 69 76 chr6 108458100 108458390 -41058647 - B4 SINE B4 0 292 5 6 1412 745 322 82 67 chr6 108459686 108460148 -41056889 - MLT1K LTR MaLR -6 589 121 6 1412 252 59 0 0 chr6 108461560 108461594 -41055443 + (GGAAA)n Simple_repeat Simple_repeat 1 34 0 6 1412 252 0 0 0 chr6 108461679 108461707 -41055330 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 6 1412 270 0 0 0 chr6 108461842 108461872 -41055165 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1412 264 30 0 0 chr6 108462390 108462423 -41054614 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1412 222 91 0 0 chr6 108462969 108463002 -41054035 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 1412 36 82 0 0 chr6 108463845 108463930 -41053107 + AT_rich Low_complexity Low_complexity 1 85 0 6 1412 265 256 53 13 chr6 108464245 108464360 -41052677 - MIR3 SINE MIR -25 183 70 6 1412 295 345 0 68 chr6 108464498 108464616 -41052421 + PB1D10 SINE Alu 1 110 -7 6 1412 220 311 155 45 chr6 108464974 108465129 -41051908 - MIRb SINE MIR -32 236 65 6 1412 908 125 123 12 chr6 108465166 108465336 -41051701 - URR1B DNA MER1_type -1 224 36 6 1412 414 225 99 99 chr6 108465336 108465358 -41051679 + CYRA11_Mm Unknown Y-chromosome 172 363 -254 6 1412 272 294 106 19 chr6 108466153 108466257 -41050780 + PB1D10 SINE Alu 1 113 -4 6 1412 268 238 120 95 chr6 108466594 108466752 -41050285 + YREP_Mm Unknown Unknown 132 293 -1519 6 1412 533 295 38 8 chr6 108466643 108466776 -41050261 - ID_B1 SINE B4 -6 218 82 6 1412 248 250 0 35 chr6 108468139 108468197 -41048840 + ID4 SINE ID 1 56 -27 6 1412 419 254 0 76 chr6 108469880 108469999 -41047038 + PB1D10 SINE Alu 1 110 -7 6 1412 432 274 0 39 chr6 108470013 108470142 -41046895 + B3A SINE B2 2 125 -73 6 1412 336 238 0 158 chr6 108470239 108470359 -41046678 + MT2B LTR ERVL 175 275 -326 6 1412 786 137 17 0 chr6 108470255 108470372 -41046665 + B1_Mur2 SINE Alu 24 142 -7 6 1412 543 128 0 0 chr6 108470372 108470458 -41046579 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 6 1412 180 336 26 34 chr6 108470513 108470630 -41046407 + MIRc SINE MIR 33 148 -120 6 1412 480 170 56 65 chr6 108470763 108470870 -41046167 + PB1D7 SINE Alu 15 120 0 6 1412 740 291 178 46 chr6 108471103 108471496 -41045541 - L1MC4 LINE L1 0 8042 7584 6 1412 1021 129 45 61 chr6 108471496 108471694 -41045343 - B2_Mm2 SINE B2 0 195 1 6 1412 740 291 178 46 chr6 108471694 108472054 -41044983 - L1MC4 LINE L1 -459 7583 7191 6 1412 308 220 0 0 chr6 108472114 108472173 -41044864 - PB1D10 SINE Alu -31 86 28 7 1412 510 306 114 26 chr6 108472196 108472773 -41044264 - L1MC4 LINE L1 -1042 7000 6348 6 1412 745 232 0 7 chr6 108472956 108473095 -41043942 + ID_B1 SINE B4 84 221 -3 7 1412 787 263 106 16 chr6 108474483 108474790 -41042247 - MTE2b LTR MaLR -63 316 1 7 1412 492 272 129 51 chr6 108474967 108475145 -41041892 + B4A SINE B4 2 193 -99 7 1412 283 269 25 13 chr6 108475190 108475269 -41041768 + B4A SINE B4 4 83 -209 7 1412 21 57 0 0 chr6 108475314 108475349 -41041688 + AT_rich Low_complexity Low_complexity 1 35 0 7 1412 605 175 70 0 chr6 108475498 108475612 -41041425 + B3 SINE B2 95 216 0 7 1412 230 306 42 0 chr6 108476063 108476135 -41040902 - MTE2a LTR MaLR -6 373 299 7 1412 818 251 45 102 chr6 108476284 108476550 -41040487 + B4A SINE B4 2 252 -40 7 1412 1328 223 146 17 chr6 108476548 108476905 -41040132 - MTD LTR MaLR -14 405 18 7 1412 283 286 29 0 chr6 108477038 108477108 -41039929 - ORR1E LTR MaLR -224 135 64 7 1412 302 215 49 25 chr6 108478801 108478882 -41038155 + B1F SINE Alu 1 83 -66 7 1412 255 289 62 69 chr6 108478882 108478924 -41038113 + B4A SINE B4 94 206 -86 7 1412 208 333 49 0 chr6 108479158 108479239 -41037798 + MIRc SINE MIR 22 106 -162 7 1412 576 0 0 0 chr6 108479827 108479891 -41037146 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 7 1412 261 0 0 0 chr6 108480239 108480268 -41036769 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1412 646 126 28 28 chr6 108480482 108480588 -41036449 - RMER10B LTR ERVL -1 397 292 7 1412 765 106 0 0 chr6 108480588 108480701 -41036336 + (GA)n Simple_repeat Simple_repeat 2 114 0 7 1412 950 143 125 6 chr6 108480705 108480881 -41036156 - RMER10B LTR ERVL -201 197 1 7 1412 216 0 0 0 chr6 108482970 108482994 -41034043 + (CAGC)n Simple_repeat Simple_repeat 4 27 0 7 1412 224 59 0 29 chr6 108483671 108483706 -41033331 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1412 253 193 0 34 chr6 108484191 108484233 -41032804 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1412 453 183 183 0 chr6 108484233 108484326 -41032711 - PB1D9 SINE Alu -10 110 1 7 1412 253 193 0 34 chr6 108484326 108484342 -41032695 + (TG)n Simple_repeat Simple_repeat 2 16 0 7 1412 220 290 0 28 chr6 108485167 108485238 -41031799 + MIR SINE MIR 38 106 -102 7 1412 318 129 0 0 chr6 108485343 108485405 -41031632 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1412 276 53 0 0 chr6 108485636 108485674 -41031363 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 1412 296 247 38 25 chr6 108485679 108485758 -41031279 - L1MC2 LINE L1 -23 6321 6242 7 1412 260 244 116 0 chr6 108485972 108486058 -41030979 - L1MC2 LINE L1 -270 6063 5968 7 1412 186 71 0 0 chr6 108487291 108487319 -41029718 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1412 204 40 0 0 chr6 108487509 108487534 -41029503 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1412 636 229 206 0 chr6 108489914 108490089 -41026948 + ID_B1 SINE B4 2 212 -12 7 1412 312 27 0 0 chr6 108490102 108490139 -41026898 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1412 847 233 80 14 chr6 108491396 108491609 -41025428 + B4A SINE B4 3 229 -63 7 1412 446 294 34 27 chr6 108491610 108491757 -41025280 + B1_Mur1 SINE Alu 2 149 0 7 1412 189 306 115 18 chr6 108493679 108493792 -41023245 - L3 LINE CR1 -154 4335 4212 7 1412 324 188 0 0 chr6 108494087 108494151 -41022886 + CT-rich Low_complexity Low_complexity 1 64 0 7 1412 185 275 130 0 chr6 108495635 108495704 -41021333 - L2b LINE L2 -301 3074 2997 7 1412 267 289 0 12 chr6 108497086 108497170 -41019867 + MER5A DNA MER1_type 29 111 -78 7 1412 3399 48 0 0 chr6 108497457 108497874 -41019163 - L1Md_F2 LINE L1 -1 6581 6165 7 1412 188 288 49 12 chr6 108498552 108498633 -41018404 - MIR SINE MIR -158 104 21 7 1412 286 57 0 0 chr6 108499478 108499513 -41017524 + U6 snRNA snRNA 1 35 -72 7 1412 330 26 0 0 chr6 108499578 108499617 -41017420 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1412 340 150 23 16 chr6 108502436 108502565 -41014472 + (TTGG)n Simple_repeat Simple_repeat 2 131 0 1 1412 810 0 0 0 chr6 108503854 108503944 -41013093 + (GA)n Simple_repeat Simple_repeat 2 91 0 2 1412 1154 150 119 5 chr6 108504165 108504366 -41012671 - URR1B DNA MER1_type -1 224 1 3 1412 490 318 48 92 chr6 108505693 108505987 -41011050 - B4 SINE B4 -10 282 2 4 1412 305 283 112 6 chr6 108506707 108506867 -41010170 + L1M5 LINE L1 5517 5693 -469 5 1412 1746 227 35 5 chr6 108506905 108507304 -41009733 + MTD LTR MaLR 1 411 -8 6 1412 471 216 76 53 chr6 108507317 108507449 -41009588 + ID_B1 SINE B4 88 222 -2 7 1412 22 0 0 0 chr6 108507449 108507471 -41009566 + AT_rich Low_complexity Low_complexity 1 22 0 8 1412 289 355 0 0 chr6 108507651 108507758 -41009279 - PB1D10 SINE Alu -9 108 2 9 1412 202 182 0 0 chr6 108507879 108507912 -41009125 + polypurine Low_complexity Low_complexity 4 36 0 1 1412 1508 126 197 0 chr6 108508047 108508212 -41008825 + ORR1C2 LTR MaLR 1 172 -212 1 1412 591 15 0 0 chr6 108508212 108508280 -41008757 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 1412 1508 126 197 0 chr6 108508280 108508424 -41008613 + ORR1C2 LTR MaLR 173 370 -14 1 1412 569 318 146 9 chr6 108508477 108508798 -41008239 - MLT1D LTR MaLR -140 365 1 1 1412 225 0 0 0 chr6 108509059 108509084 -41007953 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1412 465 90 0 0 chr6 108509169 108509194 -41007843 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1412 1145 88 0 0 chr6 108509194 108509341 -41007696 + B1_Mm SINE Alu 1 147 0 1 1412 465 90 0 0 chr6 108509341 108509393 -41007644 + (A)n Simple_repeat Simple_repeat 1 52 0 1 1412 612 40 0 0 chr6 108509559 108509634 -41007403 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 1 1412 1256 91 17 0 chr6 108509986 108510162 -41006875 + B2_Mm1t SINE B2 1 179 -14 1 1412 1242 57 0 0 chr6 108510162 108510321 -41006716 + (GAAA)n Simple_repeat Simple_repeat 3 161 0 2 1412 239 317 0 0 chr6 108510425 108510485 -41006552 + ID4 SINE ID 13 72 -11 2 1412 468 0 0 0 chr6 108510488 108510540 -41006497 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1412 269 214 174 45 chr6 108510547 108510679 -41006358 + L1M3 LINE L1 5030 5178 -962 2 1412 337 251 19 124 chr6 108510743 108510864 -41006173 + L1M3 LINE L1 5255 5358 -933 2 1412 1667 31 5 0 chr6 108510864 108511056 -41005981 + B2_Mm1a SINE B2 1 193 0 2 1412 367 225 24 73 chr6 108511056 108511193 -41005844 + L1M3 LINE L1 5358 5486 -805 2 1412 552 274 84 61 chr6 108511309 108511523 -41005514 + B4A SINE B4 3 221 -71 2 1412 220 136 23 0 chr6 108511645 108511689 -41005348 + T-rich Low_complexity Low_complexity 4 48 0 2 1412 252 86 0 0 chr6 108511723 108511758 -41005279 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 2 1412 518 310 90 35 chr6 108511758 108512333 -41004704 - L1M5 LINE L1 -1430 4716 4110 2 1412 200 240 20 0 chr6 108512375 108512425 -41004612 + (CATA)n Simple_repeat Simple_repeat 3 53 0 2 1412 587 320 45 25 chr6 108512435 108512791 -41004246 - L1MD LINE L1 -2036 4110 3748 3 1412 479 336 52 43 chr6 108512814 108513047 -41003990 - MER2 DNA MER2_type -5 340 106 3 1412 364 239 29 91 chr6 108513267 108513442 -41003595 - L1M5 LINE L1 -2727 3419 3256 2 1412 21 0 0 0 chr6 108513470 108513491 -41003546 + AT_rich Low_complexity Low_complexity 1 21 0 3 1412 300 290 0 74 chr6 108515834 108515942 -41001095 - PB1D10 SINE Alu -17 100 1 3 1412 556 232 147 50 chr6 108516206 108516505 -41000532 - RLTR15 LTR ERVK -31 328 1 3 1412 730 257 155 20 chr6 108516743 108516858 -41000179 - L1MC LINE L1 -2923 3223 3065 3 1412 844 169 116 29 chr6 108516858 108517065 -40999972 + URR1B DNA MER1_type 1 225 0 3 1412 730 257 155 20 chr6 108517065 108517342 -40999695 - L1MC LINE L1 -3082 3064 2779 3 1412 543 267 67 0 chr6 108517352 108517487 -40999550 - RSINE1 SINE B4 -14 151 8 3 1412 213 250 42 0 chr6 108518588 108518636 -40998401 + ID2 SINE ID 15 64 -19 3 1412 245 333 0 0 chr6 108518703 108518772 -40998265 + ID4_ SINE ID 13 81 -2 3 1412 350 0 44 0 chr6 108519042 108519087 -40997950 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1412 1181 43 0 0 chr6 108519087 108519225 -40997812 - B1_Mm SINE Alu -8 139 2 4 1412 288 0 0 0 chr6 108519986 108520018 -40997019 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1412 665 111 0 18 chr6 108520153 108520263 -40996774 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 4 1412 182 240 60 0 chr6 108520804 108520854 -40996183 - MIRc SINE MIR -128 140 88 4 1412 263 264 39 147 chr6 108521856 108521985 -40995052 - PB1D7 SINE Alu -34 115 1 4 1412 323 233 0 85 chr6 108521893 108521987 -40995050 - ID_B1 SINE B4 -59 165 80 4 1412 1831 122 57 9 chr6 108522285 108522600 -40994437 - Lx2 LINE L1 0 6997 6668 4 1412 261 324 67 0 chr6 108522874 108522892 -40994145 + ID_B1 SINE B4 61 172 -52 4 1412 269 256 92 11 chr6 108522892 108522979 -40994058 + B1F SINE Alu 1 94 -55 4 1412 207 157 0 0 chr6 108523067 108523118 -40993919 + C-rich Low_complexity Low_complexity 1 51 0 5 1412 344 82 16 0 chr6 108524015 108524076 -40992961 + (CAAAAA)n Simple_repeat Simple_repeat 4 65 0 5 1412 463 222 26 0 chr6 108524440 108524563 -40992474 + B1F1 SINE Alu 8 132 -16 5 1412 1039 196 17 64 chr6 108524598 108524833 -40992204 - URR1B DNA MER1_type 0 225 2 5 1412 395 218 58 0 chr6 108524863 108524950 -40992087 + PB1D7 SINE Alu 16 107 -13 5 1412 473 267 44 7 chr6 108525717 108525853 -40991184 - MER2 DNA MER2_type -27 318 178 5 1412 612 271 33 38 chr6 108525949 108526133 -40990904 + B3 SINE B2 1 183 -33 5 1412 466 265 153 46 chr6 108526238 108526385 -40990652 + RMER10A LTR ERVL 129 304 -138 5 1412 465 19 0 0 chr6 108526385 108526439 -40990598 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1412 466 265 153 46 chr6 108526439 108526552 -40990485 + RMER10A LTR ERVL 305 417 -25 5 1412 390 42 0 0 chr6 108526959 108527007 -40990030 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1412 361 303 110 0 chr6 108527013 108527158 -40989879 - MER2 DNA MER2_type -170 175 15 3 1412 452 211 32 24 chr6 108527195 108527321 -40989716 - MLT1G1 LTR MaLR -85 494 368 6 1413 283 318 67 79 chr6 108527674 108527838 -40989199 + RSINE1 SINE B4 3 164 -1 6 1413 502 248 70 0 chr6 108527849 108527921 -40989116 + ID SINE ID 2 82 -142 6 1413 344 216 135 19 chr6 108527921 108528025 -40989012 + PB1D10 SINE Alu 1 116 -1 6 1413 739 251 88 16 chr6 108528247 108528429 -40988608 - B3 SINE B2 -21 195 1 6 1413 524 248 38 15 chr6 108528513 108528644 -40988393 - RSINE1 SINE B4 -19 146 13 6 1413 670 258 11 33 chr6 108528661 108528845 -40988192 - B3A SINE B2 -1 197 18 6 1413 772 203 14 14 chr6 108528871 108529016 -40988021 - B1_Mur1 SINE Alu -1 148 4 6 1413 542 305 57 0 chr6 108529200 108529410 -40987627 + ID_B1 SINE B4 2 223 -1 6 1413 181 297 40 0 chr6 108530600 108530674 -40986363 + MIRc SINE MIR 104 180 -88 6 1413 278 333 102 81 chr6 108530994 108531117 -40985920 + B4A SINE B4 1 132 -160 7 1413 357 82 0 0 chr6 108531117 108531166 -40985871 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1413 278 333 102 81 chr6 108531166 108531210 -40985827 + B4A SINE B4 133 183 -109 7 1413 738 245 0 0 chr6 108531210 108531349 -40985688 + B1_Mur1 SINE Alu 1 139 -10 7 1413 278 333 102 81 chr6 108531349 108531401 -40985636 + B4A SINE B4 184 231 -61 7 1413 531 31 0 0 chr6 108531401 108531466 -40985571 + (GA)n Simple_repeat Simple_repeat 1 65 0 7 1413 278 333 102 81 chr6 108531466 108531528 -40985509 + B4A SINE B4 232 290 -2 7 1413 1786 192 46 58 chr6 108532228 108532643 -40984394 - MTD LTR MaLR -9 410 1 7 1413 359 245 63 159 chr6 108533602 108533791 -40983246 + B3 SINE B2 43 213 -3 7 1413 1301 80 23 6 chr6 108534398 108534575 -40982462 + B2_Mm2 SINE B2 2 181 -14 7 1413 323 111 33 0 chr6 108534604 108534665 -40982372 + B2_Mm2 SINE B2 49 116 -82 7 1413 31 0 0 0 chr6 108534678 108534709 -40982328 + AT_rich Low_complexity Low_complexity 1 31 0 7 1413 789 215 50 11 chr6 108534730 108534909 -40982128 - B3A SINE B2 -11 187 2 7 1413 236 236 264 0 chr6 108535364 108535436 -40981601 + B1F1 SINE Alu 1 91 -58 8 1413 519 245 0 9 chr6 108536040 108536151 -40980886 - PB1D10 SINE Alu -7 110 1 8 1413 841 297 46 28 chr6 108536174 108536458 -40980579 + B4 SINE B4 2 290 -2 8 1413 326 133 27 0 chr6 108536601 108536676 -40980361 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 8 1413 441 50 0 0 chr6 108536677 108536737 -40980300 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1413 935 102 80 0 chr6 108537040 108537177 -40979860 + B1_Mus1 SINE Alu 1 148 0 8 1413 180 0 0 0 chr6 108537310 108537330 -40979707 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 8 1413 289 258 69 0 chr6 108537347 108537443 -40979594 + PB1 SINE Alu 1 107 -10 8 1413 539 211 73 20 chr6 108537615 108537765 -40979272 + RSINE1 SINE B4 4 161 -4 8 1413 677 179 0 0 chr6 108537948 108538065 -40978972 + B1_Mur4 SINE Alu 1 117 -33 8 1413 333 0 0 0 chr6 108538065 108538102 -40978935 + (GA)n Simple_repeat Simple_repeat 2 38 0 9 1413 273 363 62 22 chr6 108538418 108538691 -40978346 + B4A SINE B4 3 286 -6 9 1413 3323 246 26 11 chr6 108538930 108539689 -40977348 + Lx8 LINE L1 6374 7144 -329 9 1413 695 62 0 118 chr6 108539722 108539925 -40977112 + GA-rich Low_complexity Low_complexity 2 180 0 9 1413 202 212 45 15 chr6 108539993 108540060 -40976977 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 9 1413 29 0 0 0 chr6 108540082 108540111 -40976926 + AT_rich Low_complexity Low_complexity 1 29 0 9 1413 678 197 23 0 chr6 108540367 108540499 -40976538 + B1_Mur1 SINE Alu 2 136 -13 9 1413 242 56 0 27 chr6 108540501 108540538 -40976499 + (TAA)n Simple_repeat Simple_repeat 3 38 0 9 1413 410 266 17 34 chr6 108540589 108540706 -40976331 + ID_B1 SINE B4 108 222 -2 9 1413 949 138 28 0 chr6 108540713 108540858 -40976179 + B1_Mur3 SINE Alu 1 149 0 9 1413 23 0 0 0 chr6 108541504 108541527 -40975510 + AT_rich Low_complexity Low_complexity 1 23 0 1 1413 394 293 13 79 chr6 108541902 108542054 -40974983 + ID_B1 SINE B4 81 222 -2 1 1413 198 0 0 0 chr6 108543091 108543113 -40973924 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1413 387 186 74 56 chr6 108543475 108543583 -40973454 + PB1D9 SINE Alu 5 114 -6 1 1413 437 138 12 0 chr6 108543583 108543663 -40973374 + (GGA)n Simple_repeat Simple_repeat 2 82 0 1 1413 317 215 15 0 chr6 108543953 108544018 -40973019 - ID4_ SINE ID -15 68 3 1 1413 294 50 0 0 chr6 108544059 108544099 -40972938 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1413 538 218 45 0 chr6 108544744 108544854 -40972183 + B1_Mur1 SINE Alu 2 116 -33 1 1413 221 0 35 0 chr6 108544861 108544890 -40972147 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1 1413 828 291 19 0 chr6 108544908 108545118 -40971919 + ID_B1 SINE B4 3 216 -8 1 1413 360 0 0 0 chr6 108545399 108545439 -40971598 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1413 279 227 64 120 chr6 108546021 108546146 -40970891 - MLT1F1 LTR MaLR -38 531 414 1 1413 707 267 128 0 chr6 108546164 108546359 -40970678 + ID_B1 SINE B4 1 220 -4 1 1413 690 217 0 0 chr6 108546367 108546496 -40970541 + B3 SINE B2 2 130 -86 1 1413 387 0 0 0 chr6 108546530 108546573 -40970464 + (TAAAA)n Simple_repeat Simple_repeat 5 47 0 1 1413 557 337 15 25 chr6 108546767 108546971 -40970066 - B4A SINE B4 -89 203 2 1 1413 236 327 125 18 chr6 108546979 108547091 -40969946 - MLT1F LTR MaLR -421 127 4 1 1413 315 0 0 0 chr6 108547624 108547659 -40969378 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1413 333 100 0 0 chr6 108548372 108548422 -40968615 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1413 275 152 34 0 chr6 108548710 108548769 -40968268 + CT-rich Low_complexity Low_complexity 3 63 0 1 1413 758 252 90 61 chr6 108548897 108549176 -40967861 + B4 SINE B4 2 288 -4 1 1413 565 220 29 14 chr6 108550678 108550810 -40966227 + B1_Mur1 SINE Alu 2 136 -13 1 1413 183 80 0 0 chr6 108550810 108550835 -40966202 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1413 565 211 31 15 chr6 108550835 108550848 -40966189 + B1_Mur1 SINE Alu 137 148 -1 1 1413 21 0 0 0 chr6 108550852 108550873 -40966164 + AT_rich Low_complexity Low_complexity 1 21 0 1 1413 257 255 63 11 chr6 108551038 108551133 -40965904 + L1MC LINE L1 4499 4598 -1548 1 1413 290 264 110 16 chr6 108551178 108551189 -40965848 + B1F SINE Alu 11 144 0 1 1413 359 215 81 36 chr6 108551189 108551300 -40965737 + ID_B1 SINE B4 104 219 -5 1 1413 1239 41 0 0 chr6 108551365 108551512 -40965525 - B1_Mus2 SINE Alu 0 147 1 1 1413 503 235 151 24 chr6 108551646 108551812 -40965225 - B3A SINE B2 -7 191 5 1 1413 310 235 0 14 chr6 108552053 108552122 -40964915 + MLT1E1A LTR MaLR 72 139 -514 1 1413 683 295 94 94 chr6 108552133 108552496 -40964541 + MLT1E1A LTR MaLR 258 620 -4 1 1413 193 57 57 0 chr6 108552505 108552540 -40964497 + (TTATA)n Simple_repeat Simple_repeat 2 38 0 1 1413 1061 204 43 5 chr6 108553206 108553413 -40963624 - B3 SINE B2 0 216 2 1 1413 551 329 39 41 chr6 108553611 108553973 -40963064 - MLT1A0 LTR MaLR -2 363 3 1 1413 225 261 0 0 chr6 108554030 108554076 -40962961 - B4 SINE B4 -25 267 222 1 1413 1102 68 24 12 chr6 108554094 108554679 -40962358 + (TG)n Simple_repeat Simple_repeat 1 592 0 1 1413 268 304 0 0 chr6 108554743 108554822 -40962215 - RSINE1 SINE B4 -75 90 12 1 1413 639 301 6 12 chr6 108554866 108555031 -40962006 - B4 SINE B4 -80 212 49 1 1413 690 200 0 8 chr6 108555020 108555151 -40961886 + B3 SINE B2 87 216 0 1 1413 509 235 188 0 chr6 108555323 108555352 -40961685 - ID_B1 SINE B4 -21 203 165 1 1413 537 80 0 0 chr6 108555352 108555427 -40961610 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 1 1413 509 235 188 0 chr6 108555427 108555567 -40961470 - ID_B1 SINE B4 -60 164 3 1 1413 266 318 93 20 chr6 108556002 108556153 -40960884 + RSINE1 SINE B4 3 164 -1 1 1413 188 355 18 35 chr6 108556336 108556450 -40960587 - MIR SINE MIR -116 146 35 1 1413 290 45 23 0 chr6 108556635 108556679 -40960358 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1 1413 544 298 22 22 chr6 108557450 108557632 -40959405 - B3A SINE B2 -16 182 1 1 1413 361 258 210 19 chr6 108557737 108557899 -40959138 + B3A SINE B2 1 193 -5 1 1413 335 254 0 0 chr6 108557911 108557978 -40959059 + ID4_ SINE ID 8 74 -9 1 1413 656 166 27 0 chr6 108560496 108560630 -40956407 + B1_Mus1 SINE Alu 2 150 0 1 1413 247 333 41 61 chr6 108560750 108560897 -40956140 + MLT1A1 LTR MaLR 260 403 -5 1 1413 748 234 7 14 chr6 108561007 108561154 -40955883 + B1_Mur2 SINE Alu 4 149 0 1 1413 197 65 0 31 chr6 108561158 108561190 -40955847 + (CACCC)n Simple_repeat Simple_repeat 1 31 0 1 1413 24 0 0 0 chr6 108561194 108561218 -40955819 + AT_rich Low_complexity Low_complexity 1 24 0 1 1413 484 216 175 0 chr6 108561835 108562006 -40955031 + ORR1E LTR MaLR 159 359 0 1 1413 25 0 0 0 chr6 108562217 108562242 -40954795 + AT_rich Low_complexity Low_complexity 1 25 0 1 1413 466 194 0 11 chr6 108562566 108562660 -40954377 + B1F SINE Alu 6 98 -51 1 1413 877 261 11 55 chr6 108562653 108562925 -40954112 - B4 SINE B4 -27 265 6 1 1413 651 285 13 0 chr6 108563453 108563604 -40953433 + RSINE1 SINE B4 2 154 -11 1 1413 515 130 0 8 chr6 108565166 108565257 -40951780 - B1_Mur4 SINE Alu -5 142 60 1 1413 298 223 83 83 chr6 108565357 108565489 -40951548 - MLT1L LTR MaLR -324 286 155 1 1413 1261 27 0 0 chr6 108567470 108567616 -40949421 + B1_Mus2 SINE Alu 2 147 0 1 1413 344 244 13 0 chr6 108568526 108568604 -40948433 - ID4 SINE ID -2 81 3 1 1413 462 257 84 39 chr6 108568723 108568877 -40948160 + RSINE1 SINE B4 3 163 -2 1 1413 331 0 0 0 chr6 108568878 108568917 -40948120 + HAL1-3A_ME LINE L1 1978 2016 -842 1 1413 430 340 0 14 chr6 108569405 108569548 -40947489 - RSINE1 SINE B4 -22 143 3 1 1413 486 33 0 0 chr6 108569819 108569879 -40947158 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1413 223 323 15 0 chr6 108570008 108570073 -40946964 - ID4 SINE ID -17 66 1 1 1413 228 86 0 0 chr6 108570293 108570328 -40946709 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1413 248 243 40 0 chr6 108570331 108570446 -40946591 + (TATG)n Simple_repeat Simple_repeat 1 119 0 1 1413 225 196 0 0 chr6 108570449 108570495 -40946542 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1413 2532 45 0 18 chr6 108571170 108571512 -40945525 - IAPEY2_LTR LTR ERVK -3 354 19 1 1413 303 321 0 0 chr6 108571660 108571741 -40945296 - ID4_ SINE ID 0 83 3 1 1413 1149 49 0 14 chr6 108572252 108572398 -40944639 + B1_Mus2 SINE Alu 2 145 -2 1 1413 425 235 143 0 chr6 108572772 108572891 -40944146 + Lx8 LINE L1 6958 7093 -380 1 1413 3009 48 2 19 chr6 108572923 108573346 -40943691 - BGLII LTR ERVK 0 421 6 1 1413 538 250 340 13 chr6 108573369 108573596 -40943441 + Lx8 LINE L1 7173 7473 0 1 1413 363 256 53 23 chr6 108573830 108573962 -40943075 - L1MA5A LINE L1 -9 6288 6153 1 1413 417 326 13 40 chr6 108574006 108574042 -40942995 - MTE2a LTR MaLR -62 317 283 1 1413 1898 208 69 3 chr6 108574042 108574433 -40942604 - MTD LTR MaLR -2 417 1 1 1413 417 326 13 40 chr6 108574433 108574546 -40942491 - MTE2a LTR MaLR -97 282 172 1 1413 489 250 0 0 chr6 108574690 108574782 -40942255 + RSINE1 SINE B4 46 137 -28 1 1413 710 201 57 7 chr6 108575593 108575733 -40941304 + B1_Mur2 SINE Alu 3 149 0 1 1413 721 223 7 0 chr6 108575811 108575950 -40941087 + B1_Mus1 SINE Alu 3 142 -6 1 1413 1317 227 121 6 chr6 108575991 108576323 -40940714 + ORR1D2 LTR MaLR 1 370 0 1 1413 467 317 8 8 chr6 108576437 108576561 -40940476 + ID_B1 SINE B4 87 210 -14 1 1413 831 21 0 0 chr6 108576565 108576662 -40940375 + (GGGAA)n Simple_repeat Simple_repeat 3 99 0 1 1413 445 269 134 56 chr6 108576676 108576960 -40940077 + L1MB2 LINE L1 5817 6122 -49 1 1413 520 252 0 0 chr6 108576967 108577078 -40939959 + RSINE1 SINE B4 10 120 -45 1 1413 293 229 182 30 chr6 108577162 108577261 -40939776 + PB1D10 SINE Alu 1 114 -3 1 1413 190 308 19 101 chr6 108577261 108577420 -40939617 + L2a LINE L2 2817 2962 -457 1 1413 407 256 95 29 chr6 108578275 108578412 -40938625 + ID_B1 SINE B4 79 224 0 1 1413 431 356 0 0 chr6 108578500 108578632 -40938405 + B1F2 SINE Alu 18 149 0 1 1413 1192 62 7 0 chr6 108578775 108578921 -40938116 + B1_Mm SINE Alu 1 147 0 1 1413 262 45 45 0 chr6 108578931 108578975 -40938062 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 1 1413 200 100 24 48 chr6 108579006 108579048 -40937989 + A-rich Low_complexity Low_complexity 3 43 0 1 1413 624 287 161 53 chr6 108579391 108579733 -40937304 - MTEa LTR MaLR 0 379 1 1 1413 271 327 80 34 chr6 108580156 108580419 -40936618 + L2a LINE L2 2972 3246 -180 1 1413 280 321 0 0 chr6 108580420 108580501 -40936536 + ID4_ SINE ID 3 83 0 1 1413 1482 207 27 35 chr6 108580746 108581112 -40935925 + ORR1D2 LTR MaLR 3 365 -5 1 1413 330 115 0 0 chr6 108581313 108581365 -40935672 + (GGA)n Simple_repeat Simple_repeat 2 53 0 1 1413 401 379 16 5 chr6 108581523 108581714 -40935323 - MER58A DNA MER1_type -4 220 28 1 1413 228 200 0 189 chr6 108582304 108582351 -40934686 + RSINE1 SINE B4 106 145 -20 1 1413 357 24 0 0 chr6 108582351 108582393 -40934644 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1413 228 200 0 189 chr6 108582393 108582419 -40934618 + RSINE1 SINE B4 146 165 0 1 1413 307 329 124 76 chr6 108582493 108583122 -40933915 + L1MC4 LINE L1 7293 7951 -91 1 1413 270 358 71 21 chr6 108583157 108583297 -40933740 - B1F SINE Alu 0 149 3 1 1413 449 254 91 0 chr6 108583545 108583655 -40933382 + PB1 SINE Alu 6 125 -2 1 1413 3591 35 28 5 chr6 108585105 108585531 -40931506 - RLTR10C LTR ERVK 0 436 1 2 1413 1057 22 0 14 chr6 108585627 108585765 -40931272 + (TCTA)n Simple_repeat Simple_repeat 2 137 0 2 1413 711 130 26 0 chr6 108586609 108586724 -40930313 + B1_Mur3 SINE Alu 21 138 -11 2 1413 504 0 0 0 chr6 108586725 108586781 -40930256 + (CAAAC)n Simple_repeat Simple_repeat 2 57 0 2 1413 228 244 51 0 chr6 108587128 108587206 -40929831 + MTEa LTR MaLR 297 378 -1 2 1413 328 246 0 14 chr6 108587289 108587359 -40929678 - PB1D7 SINE Alu -11 109 41 2 1413 589 284 14 0 chr6 108587400 108587541 -40929496 + B1F1 SINE Alu 7 149 0 2 1413 476 241 35 0 chr6 108588016 108588132 -40928905 - ID_B1 SINE B4 -6 218 99 2 1413 315 150 0 0 chr6 108588416 108588476 -40928561 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 2 1413 635 253 108 17 chr6 108589960 108589994 -40927043 - RMER15 LTR ERVL -14 561 528 2 1413 252 0 0 0 chr6 108589994 108590022 -40927015 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1413 635 253 108 17 chr6 108590022 108590228 -40926809 - RMER15 LTR ERVL -48 527 300 2 1413 536 261 0 0 chr6 108590631 108590742 -40926295 + RSINE1 SINE B4 20 130 -35 2 1413 540 0 0 0 chr6 108590750 108590810 -40926227 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1413 324 0 0 0 chr6 108590810 108590845 -40926192 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1413 249 278 57 50 chr6 108591252 108591392 -40925645 + MLT1A LTR MaLR 2 142 -232 2 1413 2109 112 0 9 chr6 108591556 108591881 -40925156 + ORR1A4 LTR MaLR 2 323 -6 2 1413 180 111 0 0 chr6 108592026 108592053 -40924984 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1413 745 173 79 0 chr6 108592480 108592619 -40924418 - B1_Mur4 SINE Alu 0 150 1 2 1413 268 289 131 15 chr6 108592995 108593132 -40923905 - MIRb SINE MIR 0 262 110 2 1413 557 266 22 0 chr6 108593140 108593279 -40923758 + RSINE1 SINE B4 1 142 -23 2 1413 307 98 0 19 chr6 108593708 108593760 -40923277 + B1_Mur4 SINE Alu 100 150 0 2 1413 502 198 63 0 chr6 108593861 108593972 -40923065 + B1F1 SINE Alu 23 140 -9 2 1413 749 265 70 52 chr6 108593984 108594271 -40922766 + B4A SINE B4 1 292 0 2 1413 32 26 0 0 chr6 108594739 108594778 -40922259 + AT_rich Low_complexity Low_complexity 1 39 0 2 1413 1120 133 112 15 chr6 108594801 108595007 -40922030 + URR1A DNA MER1_type 1 226 0 2 1413 1587 220 157 15 chr6 108595141 108595607 -40921430 - MT2A LTR ERVL 0 533 2 2 1413 227 133 22 0 chr6 108595818 108595863 -40921174 + GA-rich Low_complexity Low_complexity 1 46 0 2 1413 300 137 0 0 chr6 108596043 108596094 -40920943 + (TCTCCC)n Simple_repeat Simple_repeat 6 56 0 2 1413 250 222 0 0 chr6 108596094 108596148 -40920889 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1413 186 43 0 0 chr6 108596516 108596539 -40920498 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 1413 633 199 60 78 chr6 108597540 108597758 -40919279 + L1MA5 LINE L1 5804 6017 -286 2 1413 530 293 64 50 chr6 108597771 108598069 -40918968 + L1MA5 LINE L1 5981 6282 -18 2 1413 306 0 0 0 chr6 108598351 108598385 -40918652 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1413 236 246 35 17 chr6 108598455 108598513 -40918524 + ID4 SINE ID 23 81 -2 2 1413 189 0 0 0 chr6 108598552 108598573 -40918464 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1413 564 153 35 18 chr6 108598716 108598829 -40918208 + B1_Mur1 SINE Alu 35 149 0 2 1413 1194 167 24 5 chr6 108598849 108599054 -40917983 + B3 SINE B2 1 209 -7 2 1413 336 148 49 0 chr6 108599318 108599379 -40917658 + ID4 SINE ID 3 66 -17 2 1413 275 309 65 32 chr6 108599424 108599578 -40917459 + MER5A DNA MER1_type 3 161 -28 2 1413 716 260 9 75 chr6 108599774 108599986 -40917051 + B3A SINE B2 1 198 0 2 1413 602 283 0 0 chr6 108600008 108600146 -40916891 + B1_Mur1 SINE Alu 2 139 -10 2 1413 515 273 84 21 chr6 108600335 108600477 -40916560 - RSINE1 SINE B4 -14 151 1 2 1413 663 199 26 72 chr6 108600498 108600650 -40916387 - B1_Mur2 SINE Alu -1 148 4 2 1413 1081 315 44 42 chr6 108600669 108601283 -40915754 + L1ME2 LINE L1 5291 5905 -259 2 1413 1135 192 174 3 chr6 108601304 108601602 -40915435 + ORR1D1 LTR MaLR 6 354 -20 2 1413 328 274 137 0 chr6 108602181 108602276 -40914761 + RSINE1 SINE B4 4 111 -54 2 1413 289 241 136 11 chr6 108602364 108602452 -40914585 + PB1D9 SINE Alu 17 115 -5 2 1413 2467 275 59 20 chr6 108602478 108603223 -40913814 + Lx8 LINE L1 6165 6938 -535 2 1413 217 226 145 0 chr6 108603925 108603987 -40913050 - ID SINE ID -153 71 1 2 1413 303 325 35 9 chr6 108604333 108604448 -40912589 + B1F SINE Alu 24 141 -8 2 1413 343 233 164 10 chr6 108604469 108604573 -40912464 + PB1D9 SINE Alu 1 120 0 2 1413 372 257 204 31 chr6 108604855 108605080 -40911957 + RMER15 LTR ERVL 298 561 -14 2 1413 1857 125 6 65 chr6 108605146 108605487 -40911550 + ORR1A4 LTR MaLR 1 321 -8 2 1413 589 232 102 61 chr6 108605574 108605771 -40911266 - ID_B1 SINE B4 -9 215 11 2 1413 324 268 82 0 chr6 108606001 108606098 -40910939 - MER91C DNA Tip100 -34 106 2 2 1413 405 189 207 0 chr6 108606205 108606316 -40910721 - B1F2 SINE Alu -10 139 6 2 1413 217 374 47 0 chr6 108606510 108606617 -40910420 + MIRb SINE MIR 24 135 -133 2 1413 21 0 0 0 chr6 108606888 108606909 -40910128 + AT_rich Low_complexity Low_complexity 1 21 0 2 1413 1340 165 70 4 chr6 108607070 108607343 -40909694 + RLTR11A LTR ERVK 238 528 0 2 1413 431 273 19 71 chr6 108607432 108607557 -40909480 - ID_B1 SINE B4 -78 146 32 2 1413 495 0 0 0 chr6 108607557 108607612 -40909425 + (CAGG)n Simple_repeat Simple_repeat 4 58 0 2 1413 431 273 19 71 chr6 108607612 108607640 -40909397 - ID SINE ID -193 31 1 2 1413 217 227 0 0 chr6 108607671 108607715 -40909322 + CT-rich Low_complexity Low_complexity 3 46 0 2 1413 283 254 42 14 chr6 108607811 108607892 -40909145 + B1F SINE Alu 13 95 -25 2 1413 23 33 0 0 chr6 108607895 108607925 -40909112 + AT_rich Low_complexity Low_complexity 1 30 0 2 1413 198 0 0 0 chr6 108609905 108609927 -40907110 + (G)n Simple_repeat Simple_repeat 1 22 0 2 1413 224 277 21 21 chr6 108610521 108610617 -40906420 + (CCCCG)n Simple_repeat Simple_repeat 1 96 0 2 1413 227 282 0 0 chr6 108610544 108610615 -40906422 + C-rich Low_complexity Low_complexity 1 71 0 2 1413 180 0 0 0 chr6 108612099 108612119 -40904918 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 2 1413 192 77 0 0 chr6 108613089 108613115 -40903922 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1413 225 0 0 0 chr6 108613385 108613410 -40903627 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1413 412 281 58 0 chr6 108613648 108613769 -40903268 + B1F2 SINE Alu 5 132 -17 2 1413 310 307 57 28 chr6 108613913 108614054 -40902983 + B1F SINE Alu 5 149 0 2 1413 270 233 0 0 chr6 108615444 108615504 -40901533 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1413 27 0 0 0 chr6 108616500 108616527 -40900510 + AT_rich Low_complexity Low_complexity 1 27 0 2 1413 835 224 33 112 chr6 108616937 108617178 -40899859 - ID_B1 SINE B4 0 224 3 2 1413 253 242 0 16 chr6 108618864 108618927 -40898110 - MIR SINE MIR -66 142 81 2 1413 284 304 89 47 chr6 108619087 108619256 -40897781 - MIR SINE MIR -85 177 2 2 1413 272 231 236 19 chr6 108619357 108619463 -40897574 - ID_B1 SINE B4 0 224 96 2 1413 737 130 89 30 chr6 108619536 108619671 -40897366 - B1_Mur3 SINE Alu -6 143 1 2 1413 371 289 10 0 chr6 108619894 108619991 -40897046 + PB1D10 SINE Alu 8 105 -12 2 1413 399 271 345 12 chr6 108620039 108620207 -40896830 + ID_B1 SINE B4 1 224 0 2 1413 216 0 0 0 chr6 108620225 108620249 -40896788 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1413 249 182 28 70 chr6 108621280 108621299 -40895738 + polypurine Low_complexity Low_complexity 4 22 0 2 1413 599 221 0 26 chr6 108621299 108621415 -40895622 + PB1D7 SINE Alu 1 113 -7 2 1413 249 182 28 70 chr6 108621415 108621466 -40895571 + polypurine Low_complexity Low_complexity 23 71 0 2 1413 1315 153 13 22 chr6 108621503 108621730 -40895307 + URR1B DNA MER1_type 1 225 0 2 1413 217 333 11 11 chr6 108621767 108621835 -40895202 + polypurine Low_complexity Low_complexity 2 70 0 2 1413 662 261 133 5 chr6 108621835 108621896 -40895141 + ID SINE ID 3 84 -140 2 1413 324 0 0 0 chr6 108621896 108621932 -40895105 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1413 662 261 133 5 chr6 108621932 108622066 -40894971 + ID_B1 SINE B4 85 223 -1 2 1413 217 333 11 11 chr6 108622066 108622085 -40894952 + polypurine Low_complexity Low_complexity 71 88 0 2 1413 1269 254 58 62 chr6 108622136 108622635 -40894402 + L1MB5 LINE L1 5293 5789 -391 2 1413 488 258 47 8 chr6 108622674 108622803 -40894234 + RSINE1 SINE B4 3 136 -29 2 1413 568 286 38 0 chr6 108622823 108623008 -40894029 + L1MB5 LINE L1 5804 5995 -179 2 1413 396 59 0 0 chr6 108623008 108623059 -40893978 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1413 538 276 116 35 chr6 108623074 108623212 -40893825 + B3 SINE B2 11 167 -49 2 1413 255 31 0 0 chr6 108623212 108623244 -40893793 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1413 538 276 116 35 chr6 108623244 108623278 -40893759 + B3 SINE B2 168 197 -19 2 1413 552 343 17 29 chr6 108623287 108623461 -40893576 + ID_B1 SINE B4 10 181 -43 2 1413 603 40 0 0 chr6 108623461 108623535 -40893502 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 2 1413 564 56 0 0 chr6 108623536 108623608 -40893429 + (CAGG)n Simple_repeat Simple_repeat 1 72 0 2 1413 420 231 0 0 chr6 108623738 108623842 -40893195 + (TA)n Simple_repeat Simple_repeat 2 105 0 2 1413 359 256 11 0 chr6 108623856 108623946 -40893091 - L1MC5 LINE L1 -174 7787 7697 2 1413 977 147 0 0 chr6 108624069 108624212 -40892825 + B1_Mur4 SINE Alu 7 149 -1 2 1413 830 242 13 0 chr6 108624353 108624510 -40892527 - B3 SINE B2 -57 159 1 3 1413 195 129 0 0 chr6 108624514 108624545 -40892492 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1413 1179 117 0 0 chr6 108624569 108624749 -40892288 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 3 1413 312 27 0 0 chr6 108624750 108624787 -40892250 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1413 1218 61 0 0 chr6 108624788 108624935 -40892102 - B1_Mus1 SINE Alu 0 148 2 3 1413 444 275 88 16 chr6 108625065 108625257 -40891780 - L1MC4a LINE L1 -1941 5941 5736 3 1413 333 0 0 0 chr6 108625296 108625333 -40891704 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1413 420 283 102 8 chr6 108625358 108625486 -40891551 - ID_B1 SINE B4 0 224 85 3 1413 393 248 111 28 chr6 108625500 108625608 -40891429 - PB1D10 SINE Alu 0 117 1 3 1413 230 374 26 0 chr6 108625611 108625726 -40891311 - L1MC4a LINE L1 -2143 5739 5622 3 1413 361 220 19 133 chr6 108625742 108625847 -40891190 + PB1D10 SINE Alu 10 102 -15 3 1413 204 111 0 0 chr6 108625887 108625923 -40891114 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1413 459 277 133 66 chr6 108625976 108626247 -40890790 - B4 SINE B4 -1 291 3 3 1413 1130 73 17 17 chr6 108626255 108626435 -40890602 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1413 528 158 0 0 chr6 108626435 108626530 -40890507 + CT-rich Low_complexity Low_complexity 2 96 0 3 1413 425 290 35 2 chr6 108627051 108627187 -40889850 - MIRb SINE MIR -43 165 26 3 1413 631 209 9 0 chr6 108627427 108627537 -40889500 + RSINE1 SINE B4 3 113 -52 3 1413 251 28 28 0 chr6 108628641 108628677 -40888360 + (CCTG)n Simple_repeat Simple_repeat 2 38 0 3 1413 346 337 21 0 chr6 108629071 108629166 -40887871 - ID_B1 SINE B4 -123 101 5 3 1413 277 295 26 0 chr6 108629177 108629255 -40887782 - ID4 SINE ID -1 82 3 3 1413 439 280 19 0 chr6 108629262 108629369 -40887668 - PB1D10 SINE Alu -8 109 1 3 1413 1205 68 0 0 chr6 108629401 108629549 -40887488 + B1_Mus1 SINE Alu 1 148 0 3 1413 189 0 0 0 chr6 108629549 108629570 -40887467 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1413 225 274 65 0 chr6 108629570 108629632 -40887405 + MLT1B LTR MaLR 96 161 -229 3 1413 376 306 18 9 chr6 108629677 108629789 -40887248 - PB1D7 SINE Alu -7 113 1 3 1413 198 150 0 0 chr6 108630756 108630796 -40886241 + (TTGGGG)n Simple_repeat Simple_repeat 1 40 0 3 1413 625 298 73 5 chr6 108631496 108631702 -40885335 - ID_B1 SINE B4 -4 220 1 3 1413 1489 58 10 10 chr6 108631873 108632066 -40884971 - B2_Mm2 SINE B2 -1 194 2 3 1413 217 353 136 32 chr6 108632157 108632192 -40884845 - MIR SINE MIR -90 172 136 3 1413 288 0 0 0 chr6 108632192 108632224 -40884813 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 3 1413 217 353 136 32 chr6 108632224 108632343 -40884694 - MIR SINE MIR -127 135 2 3 1413 288 299 101 16 chr6 108632696 108632825 -40884212 - B1F1 SINE Alu -9 140 1 3 1413 395 250 43 101 chr6 108633016 108633154 -40883883 + MT2B LTR ERVL 135 264 -337 3 1413 893 166 0 0 chr6 108633050 108633189 -40883848 + B1_Mus2 SINE Alu 9 147 0 3 1413 452 294 114 43 chr6 108633557 108633767 -40883270 - MIRb SINE MIR -5 263 39 3 1413 739 196 7 59 chr6 108633836 108633988 -40883049 + B1_Mus1 SINE Alu 3 146 -2 3 1413 200 220 180 0 chr6 108634267 108634317 -40882720 - L2a LINE L2 -60 3366 3308 3 1413 514 244 101 16 chr6 108635109 108635238 -40881799 - B1F SINE Alu -1 148 9 3 1413 212 324 56 28 chr6 108635141 108635249 -40881788 - B4A SINE B4 -99 193 83 3 1413 261 304 0 105 chr6 108635389 108635503 -40881534 + ID2 SINE ID 6 107 -45 3 1413 324 0 0 0 chr6 108635575 108635611 -40881426 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1413 591 246 9 0 chr6 108635612 108635726 -40881311 - RSINE1 SINE B4 -50 115 1 3 1413 225 307 17 50 chr6 108635810 108635930 -40881107 + L2a LINE L2 3303 3418 -8 3 1413 180 0 0 0 chr6 108636443 108636463 -40880574 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1413 360 294 97 40 chr6 108636480 108636604 -40880433 - ID_B1 SINE B4 -12 212 82 3 1413 257 367 14 2 chr6 108636624 108636762 -40880275 + MIR SINE MIR 3 138 -70 3 1413 578 290 22 7 chr6 108636825 108636964 -40880073 + B1F SINE Alu 9 149 0 3 1413 227 340 47 28 chr6 108636980 108637086 -40879951 - MIRb SINE MIR -117 151 44 3 1413 222 194 60 6 chr6 108637787 108637861 -40879176 + MIRb SINE MIR 83 165 -103 3 1413 374 232 24 35 chr6 108637903 108637988 -40879049 + ID_B1 SINE B4 104 187 -37 3 1413 227 173 0 19 chr6 108638030 108638083 -40878954 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1413 247 234 21 0 chr6 108638084 108638131 -40878906 + ZP3AR Satellite Satellite 38 85 -127 3 1413 318 180 0 0 chr6 108638091 108638141 -40878896 + ID4 SINE ID 4 53 -30 3 1413 445 188 69 23 chr6 108638747 108638834 -40878203 + PB1D10 SINE Alu 6 96 -21 3 1413 595 265 8 0 chr6 108639386 108639503 -40877534 + RSINE1 SINE B4 2 119 -46 3 1413 2184 108 9 22 chr6 108639502 108639825 -40877212 - ORR1A2 LTR MaLR -8 319 1 3 1413 407 19 0 19 chr6 108639864 108639917 -40877120 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 3 1413 764 280 43 0 chr6 108639947 108640154 -40876883 + B3 SINE B2 1 216 0 3 1413 825 308 0 9 chr6 108640650 108640860 -40876177 + ID_B1 SINE B4 6 213 -11 3 1413 589 285 7 14 chr6 108641010 108641156 -40875881 - ID_B1 SINE B4 -2 222 78 3 1413 3715 128 32 17 chr6 108641215 108641812 -40875225 + Lx2B LINE L1 6390 6995 -5 3 1413 447 217 75 0 chr6 108641820 108641926 -40875111 - PB1D9 SINE Alu -5 115 2 3 1413 1458 188 52 123 chr6 108642060 108642284 -40874753 + MTD LTR MaLR 12 211 -208 3 1413 960 210 80 0 chr6 108642284 108642484 -40874553 + B3 SINE B2 1 216 0 3 1413 1163 206 0 18 chr6 108642492 108642710 -40874327 + B3 SINE B2 2 215 -1 3 1413 1458 192 49 116 chr6 108642710 108642913 -40874124 + MTD LTR MaLR 212 405 -14 3 1413 237 333 0 0 chr6 108643386 108643437 -40873600 + ID4_ SINE ID 24 74 -9 3 1413 216 111 0 0 chr6 108643662 108643698 -40873339 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1413 806 270 53 10 chr6 108643735 108643941 -40873096 + ID_B1 SINE B4 6 220 -4 3 1413 192 143 0 45 chr6 108644053 108644071 -40872966 + (CAAA)n Simple_repeat Simple_repeat 2 19 0 3 1413 947 208 45 0 chr6 108644071 108644273 -40872764 + B3 SINE B2 1 211 -5 3 1413 192 143 0 45 chr6 108644273 108644320 -40872717 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 3 1413 1093 88 0 13 chr6 108644440 108644589 -40872448 - B1_Mus1 SINE Alu 0 148 2 3 1413 847 178 113 16 chr6 108644622 108644816 -40872221 + B3 SINE B2 1 213 -3 3 1413 244 150 125 36 chr6 108644903 108644969 -40872068 + MIRc SINE MIR 90 163 -113 3 1413 895 158 14 0 chr6 108644983 108645129 -40871908 - URR1A DNA MER1_type 0 226 79 3 1413 204 40 0 0 chr6 108645442 108645467 -40871570 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 3 1413 192 216 0 0 chr6 108645763 108645800 -40871237 + MIR3 SINE MIR 118 154 -54 3 1413 484 337 29 52 chr6 108646472 108646644 -40870393 + B4A SINE B4 2 169 -123 3 1413 345 47 0 0 chr6 108646791 108646834 -40870203 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1413 1205 130 0 61 chr6 108646835 108647031 -40870006 + ORR1A2 LTR MaLR 1 184 -143 3 1413 602 234 118 46 chr6 108647789 108647941 -40869096 + RSINE1 SINE B4 3 165 0 3 1413 618 160 0 0 chr6 108648054 108648148 -40868889 + ID_B1 SINE B4 128 221 -3 3 1413 235 229 11 117 chr6 108648990 108649084 -40867953 + B1F1 SINE Alu 3 86 -63 3 1413 234 0 0 0 chr6 108649122 108649148 -40867889 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1413 261 0 0 0 chr6 108649148 108649176 -40867861 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1413 228 235 0 24 chr6 108649176 108649259 -40867778 + CT-rich Low_complexity Low_complexity 2 82 0 3 1413 180 125 0 0 chr6 108649274 108649306 -40867731 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1413 288 0 0 0 chr6 108649306 108649338 -40867699 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1413 816 186 0 7 chr6 108649387 108649528 -40867509 - B1_Mur2 SINE Alu -8 141 2 3 1413 200 357 36 62 chr6 108649533 108649727 -40867310 - L2c LINE L2 -98 3289 3101 3 1413 376 190 44 19 chr6 108650119 108650214 -40866823 + B1F SINE Alu 22 112 -5 3 1413 302 0 26 0 chr6 108650244 108650282 -40866755 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1413 220 225 0 0 chr6 108650424 108650464 -40866573 - MIRc SINE MIR -119 149 110 3 1413 502 0 25 37 chr6 108651000 108651081 -40865956 + (GTGTG)n Simple_repeat Simple_repeat 1 80 0 3 1413 361 247 149 46 chr6 108651348 108651543 -40865494 - MER20 DNA MER1_type 0 219 5 3 1413 243 61 0 0 chr6 108651669 108651702 -40865335 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1413 297 0 0 0 chr6 108651714 108651747 -40865290 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1413 270 288 55 0 chr6 108651769 108651842 -40865195 - ID4_ SINE ID 0 83 7 3 1413 522 294 31 20 chr6 108651868 108652085 -40864952 - B3A SINE B2 -1 215 1 3 1413 352 304 0 0 chr6 108652114 108652206 -40864831 + ID_B1 SINE B4 82 173 -51 3 1413 342 0 0 0 chr6 108652623 108652661 -40864376 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1413 531 0 0 0 chr6 108652931 108652990 -40864047 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1413 615 272 0 7 chr6 108653298 108653435 -40863602 + ID_B1 SINE B4 89 224 0 4 1413 395 225 133 0 chr6 108653478 108653598 -40863439 + B1F SINE Alu 2 137 -12 4 1413 197 0 71 0 chr6 108653598 108653626 -40863411 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4 1413 22 35 0 0 chr6 108653689 108653718 -40863319 + AT_rich Low_complexity Low_complexity 1 29 0 4 1413 315 0 0 0 chr6 108653719 108653754 -40863283 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1413 428 254 44 35 chr6 108653756 108653870 -40863167 - RSINE1 SINE B4 -48 117 3 4 1413 267 286 39 0 chr6 108653914 108653991 -40863046 - ID4 SINE ID -1 82 3 4 1413 261 0 0 0 chr6 108654263 108654292 -40862745 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1413 235 346 13 0 chr6 108654776 108654854 -40862183 + MLT1K LTR MaLR 404 482 -113 4 1413 276 30 0 0 chr6 108655131 108655164 -40861873 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 4 1413 1102 79 0 0 chr6 108655164 108655298 -40861739 - B1_Mus1 SINE Alu -8 140 7 4 1413 363 266 42 11 chr6 108655305 108655400 -40861637 - ID_B1 SINE B4 0 224 127 4 1413 502 202 42 11 chr6 108655439 108655534 -40861503 - PB1D7 SINE Alu -5 115 18 4 1413 226 309 42 76 chr6 108655454 108655573 -40861464 - MT2B2 LTR ERVL -330 254 140 4 1413 684 67 0 0 chr6 108656439 108656529 -40860508 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 4 1413 251 316 0 93 chr6 108656551 108656659 -40860378 + ID2 SINE ID 2 99 -53 4 1413 205 113 18 54 chr6 108656690 108656746 -40860291 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1413 1405 86 16 0 chr6 108656766 108656953 -40860084 - B2_Mm2 SINE B2 -4 191 2 4 1413 387 247 69 40 chr6 108656990 108657091 -40859946 - ID_B1 SINE B4 -95 129 26 4 1413 564 315 62 29 chr6 108657172 108657545 -40859492 - L1MB4 LINE L1 -84 6099 5716 4 1413 321 191 237 119 chr6 108657934 108658052 -40858985 + RSINE1 SINE B4 4 127 -38 4 1413 291 85 0 0 chr6 108658075 108658122 -40858915 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1413 1956 102 28 19 chr6 108658199 108658518 -40858519 + RLTRETN_Mm LTR ERVK 1 322 0 4 176 1140 89 0 0 chr6 108658607 108658753 -40858284 - B1_Mus2 SINE Alu 0 147 2 4 1414 222 191 0 0 chr6 108659257 108659304 -40857733 + GA-rich Low_complexity Low_complexity 2 48 0 4 1414 266 316 21 10 chr6 108660269 108660365 -40856672 - MIR SINE MIR -71 137 41 4 1414 246 151 13 27 chr6 108660429 108660504 -40856533 + GA-rich Low_complexity Low_complexity 1 74 0 4 1414 473 281 26 0 chr6 108660529 108660643 -40856394 - RSINE1 SINE B4 -38 127 11 4 1414 423 0 0 0 chr6 108660718 108660765 -40856272 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1414 387 0 0 0 chr6 108660765 108660807 -40856230 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1414 335 234 63 21 chr6 108660820 108660932 -40856105 - B3A SINE B2 -30 168 1 4 1414 326 219 122 9 chr6 108660933 108661048 -40855989 + Charlie1b DNA MER1_type 372 499 -24 4 1414 392 308 84 0 chr6 108661160 108661267 -40855770 - MER5A1 DNA MER1_type -42 124 9 4 1414 278 266 24 37 chr6 108661610 108661692 -40855345 + ID4 SINE ID 1 81 -2 4 1414 450 0 0 0 chr6 108662096 108662146 -40854891 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1414 965 225 75 36 chr6 108662146 108662399 -40854638 - B4 SINE B4 -23 269 7 4 1414 579 266 7 40 chr6 108662481 108662630 -40854407 - B1_Mur1 SINE Alu -2 147 4 4 1414 189 171 0 0 chr6 108662637 108662672 -40854365 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 4 1414 499 86 0 0 chr6 108662780 108662850 -40854187 - B1_Mur4 SINE Alu 0 150 81 4 1414 342 0 0 0 chr6 108662850 108662888 -40854149 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1414 414 0 0 0 chr6 108663359 108663405 -40853632 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1414 318 106 0 0 chr6 108663580 108663627 -40853410 + (CAA)n Simple_repeat Simple_repeat 2 48 0 4 1414 253 213 0 0 chr6 108664136 108664183 -40852854 + U5 snRNA snRNA 1 47 -69 4 1414 655 210 151 1 chr6 108664523 108664693 -40852344 - B3 SINE B2 -1 197 1 4 1414 397 293 82 23 chr6 108664753 108664924 -40852113 - B3A SINE B2 -15 183 3 4 1414 267 323 52 15 chr6 108664974 108665109 -40851928 + B1F SINE Alu 1 140 -9 4 1414 229 280 20 0 chr6 108665205 108665255 -40851782 + ID4 SINE ID 11 61 -22 4 1414 312 70 0 0 chr6 108665897 108665940 -40851097 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 1414 1257 92 0 0 chr6 108665940 108666103 -40850934 - B2_Mm2 SINE B2 -31 164 2 4 1414 366 249 16 51 chr6 108666126 108666242 -40850795 - PB1D10 SINE Alu -21 128 17 4 1414 229 188 0 0 chr6 108666248 108666296 -40850741 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1414 311 183 67 0 chr6 108666296 108666356 -40850681 - B1F SINE Alu 0 149 86 4 1414 1040 221 26 0 chr6 108666365 108666560 -40850477 - B3 SINE B2 -16 200 1 4 1414 765 260 39 19 chr6 108666571 108666779 -40850258 - ID_B1 SINE B4 -8 216 5 4 1414 1114 34 14 7 chr6 108666817 108666964 -40850073 + (TTCCC)n Simple_repeat Simple_repeat 5 152 0 4 1414 316 162 13 13 chr6 108666964 108667028 -40850009 + CT-rich Low_complexity Low_complexity 4 67 0 4 1414 269 61 0 0 chr6 108667029 108667062 -40849975 + (TCC)n Simple_repeat Simple_repeat 1 33 0 4 1414 825 176 14 21 chr6 108667065 108667210 -40849827 - B1_Mur4 SINE Alu -6 144 1 4 1414 300 309 18 0 chr6 108667357 108667467 -40849570 - PB1D7 SINE Alu -8 112 1 4 1414 187 282 14 40 chr6 108667697 108667771 -40849266 + L3 LINE CR1 4073 4144 -345 4 1414 827 75 37 24 chr6 108668074 108668238 -40848799 + (TCCC)n Simple_repeat Simple_repeat 2 167 0 4 1414 198 373 52 0 chr6 108668811 108668945 -40848092 - MIR SINE MIR -45 217 77 4 1414 693 218 63 23 chr6 108669329 108669503 -40847534 + Lx8 LINE L1 6954 7134 -339 4 1414 271 255 118 26 chr6 108669522 108669675 -40847362 + Lx8 LINE L1 7301 7467 -6 4 1414 916 187 0 0 chr6 108669708 108669858 -40847179 + B1_Mur4 SINE Alu 1 150 0 4 1414 536 269 25 0 chr6 108669967 108670086 -40846951 + MTE2a LTR MaLR 206 327 -52 4 1414 249 57 0 0 chr6 108670259 108670294 -40846743 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1414 1178 62 0 7 chr6 108670296 108670443 -40846594 - B1_Mm SINE Alu 0 147 2 4 1414 2291 132 36 55 chr6 108670919 108671304 -40845733 - ORR1C1 LTR MaLR 0 378 1 4 1414 181 130 211 53 chr6 108671900 108671957 -40845080 + L3 LINE CR1 1016 1081 -3408 4 1414 232 374 8 25 chr6 108672016 108672134 -40844903 + MIRc SINE MIR 40 155 -113 4 1414 318 241 101 0 chr6 108672466 108672545 -40844492 - B1_Mur3 SINE Alu -59 88 2 4 1414 224 246 82 0 chr6 108672774 108672835 -40844202 - B1F1 SINE Alu 0 149 84 4 1414 345 302 98 45 chr6 108672782 108672914 -40844123 - ID_B1 SINE B4 -8 216 78 4 1414 184 133 21 43 chr6 108673106 108673153 -40843884 + C-rich Low_complexity Low_complexity 2 47 0 4 1414 253 333 0 0 chr6 108673667 108673736 -40843301 + ID_B1 SINE B4 152 220 -4 4 1414 201 224 0 43 chr6 108673741 108673811 -40843226 + GA-rich Low_complexity Low_complexity 4 70 0 4 1414 180 278 40 40 chr6 108673947 108674022 -40843015 + MIR3 SINE MIR 119 193 -15 4 1414 810 299 64 0 chr6 108674220 108674424 -40842613 - ID_B1 SINE B4 -7 217 1 4 1414 297 0 0 0 chr6 108674451 108674484 -40842553 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1414 504 0 0 0 chr6 108674484 108674539 -40842498 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1414 228 254 17 0 chr6 108674540 108674599 -40842438 - ID SINE ID -154 70 11 4 1414 211 214 0 18 chr6 108674615 108674672 -40842365 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1414 461 248 0 38 chr6 108674760 108674865 -40842172 - RSINE1 SINE B4 -62 103 3 4 1414 234 62 0 0 chr6 108674872 108674904 -40842133 + (TCTCCC)n Simple_repeat Simple_repeat 6 37 0 4 1414 808 167 65 7 chr6 108674909 108675048 -40841989 - B1_Mur4 SINE Alu 0 150 4 4 1414 246 310 0 0 chr6 108675090 108675161 -40841876 - ID4 SINE ID -11 72 2 4 1414 253 157 59 0 chr6 108675328 108675379 -40841658 + MLT1E2 LTR MaLR 21 74 -553 4 1414 1465 187 103 52 chr6 108675594 108675943 -40841094 + ORR1B2 LTR MaLR 1 367 0 4 1414 381 187 0 0 chr6 108676213 108676288 -40840749 + CT-rich Low_complexity Low_complexity 4 78 0 4 1414 351 177 84 48 chr6 108676299 108676382 -40840655 - MTE2a LTR MaLR -4 375 290 4 1414 266 105 0 0 chr6 108676362 108676400 -40840637 - MTE2a LTR MaLR -323 56 19 4 1414 306 273 0 13 chr6 108676491 108676569 -40840468 + ID2 SINE ID 3 79 -4 4 1414 288 308 86 27 chr6 108676809 108676996 -40840041 - MT2A LTR ERVL -140 393 196 4 1414 1329 73 0 0 chr6 108677022 108677200 -40839837 + (GAA)n Simple_repeat Simple_repeat 3 180 0 4 1414 258 256 128 0 chr6 108677323 108677401 -40839636 - MTE2a LTR MaLR -291 88 1 4 1414 602 247 68 0 chr6 108677574 108677720 -40839317 + ID_B1 SINE B4 2 157 -67 4 1414 1195 55 7 0 chr6 108678094 108678240 -40838797 - B1_Mus1 SINE Alu 0 148 2 4 1414 515 198 50 81 chr6 108678289 108678470 -40838567 - ORR1E LTR MaLR -3 376 202 4 1414 517 264 99 66 chr6 108678456 108678699 -40838338 - ORR1E LTR MaLR -108 251 1 4 1414 1220 232 44 53 chr6 108678734 108679053 -40837984 + ORR1E LTR MaLR 42 357 -2 4 1414 676 259 146 0 chr6 108679150 108679335 -40837702 + ID_B1 SINE B4 5 216 -8 4 1414 469 326 14 7 chr6 108679730 108679872 -40837165 + RSINE1 SINE B4 4 146 -19 4 1414 1458 83 5 5 chr6 108679927 108680120 -40836917 - B2_Mm2 SINE B2 -1 194 2 4 1414 236 303 15 0 chr6 108680158 108680224 -40836813 - ID4_ SINE ID -14 69 3 4 1414 236 53 26 0 chr6 108680466 108680504 -40836533 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1414 1003 110 18 0 chr6 108680533 108680697 -40836340 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 5 1414 216 385 55 17 chr6 108681282 108681531 -40835506 - L2c LINE L2 -140 3235 2974 5 1414 186 156 0 0 chr6 108681533 108681578 -40835459 + A-rich Low_complexity Low_complexity 1 45 0 5 1414 828 258 24 5 chr6 108681929 108682139 -40834898 - ID_B1 SINE B4 -9 215 2 5 1414 295 255 117 0 chr6 108682150 108682244 -40834793 - PB1D10 SINE Alu -8 109 5 5 1414 301 270 45 57 chr6 108682503 108682621 -40834416 - MIR SINE MIR -45 223 102 5 1414 389 150 76 0 chr6 108682631 108682713 -40834324 + B1_Mur4 SINE Alu 9 139 -11 5 1414 555 53 0 0 chr6 108682713 108682788 -40834249 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1414 373 171 23 0 chr6 108682825 108682913 -40834124 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1414 535 305 77 21 chr6 108682997 108683191 -40833846 - B4A SINE B4 -86 206 2 5 1414 207 329 71 0 chr6 108683192 108683277 -40833760 - MIR SINE MIR -169 93 3 5 1414 261 346 119 64 chr6 108683711 108683930 -40833107 + MER20B DNA MER1_type 2 232 -551 5 1414 1021 173 1 8 chr6 108683953 108684125 -40832912 - B3 SINE B2 -30 163 1 5 1414 425 288 19 52 chr6 108684403 108684557 -40832480 + B1_Mur2 SINE Alu 1 149 0 5 1414 325 208 81 27 chr6 108684625 108684699 -40832338 - PB1D10 SINE Alu -29 88 11 5 1414 493 15 0 29 chr6 108685230 108685298 -40831739 + (CAAG)n Simple_repeat Simple_repeat 2 67 0 5 1414 250 294 130 20 chr6 108685332 108685478 -40831559 - L2 LINE L2 -588 2831 2670 5 1414 250 304 0 0 chr6 108685715 108685784 -40831253 + ID4 SINE ID 14 82 -1 5 1414 356 155 14 0 chr6 108685820 108685891 -40831146 + (TATG)n Simple_repeat Simple_repeat 2 73 0 5 1414 744 228 59 36 chr6 108685936 108686155 -40830882 - ID_B1 SINE B4 0 224 1 5 1414 645 270 19 26 chr6 108686474 108686630 -40830407 + B3 SINE B2 56 210 -6 5 1414 31 0 0 0 chr6 108686636 108686667 -40830370 + AT_rich Low_complexity Low_complexity 1 31 0 5 1414 191 103 26 0 chr6 108686770 108686809 -40830228 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 5 1414 306 205 110 49 chr6 108686819 108686901 -40830136 + Tigger5 DNA MER2_type 77 163 -2243 5 1414 354 282 54 9 chr6 108686925 108687036 -40830001 + Tigger5 DNA MER2_type 2291 2406 0 5 1414 1183 68 0 0 chr6 108687189 108687335 -40829702 - B1_Mus2 SINE Alu 0 147 2 5 1414 1269 170 32 0 chr6 108687396 108687614 -40829423 - URR1B DNA MER1_type 0 225 1 5 1414 326 310 26 17 chr6 108687626 108687741 -40829296 + MER3 DNA MER1_type 4 119 -90 5 1414 1068 264 93 11 chr6 108687768 108688036 -40829001 + B4 SINE B4 2 291 -1 5 1414 502 89 22 0 chr6 108688059 108688149 -40828888 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 1414 409 337 41 20 chr6 108689074 108689271 -40827766 + MIRb SINE MIR 40 240 -28 5 1414 445 278 63 0 chr6 108689407 108689533 -40827504 + MLT1B LTR MaLR 15 148 -242 5 1414 742 196 95 0 chr6 108689606 108689754 -40827283 - MTC LTR MaLR -54 367 206 5 1414 345 375 39 20 chr6 108689784 108689988 -40827049 + LTR16A LTR ERVL 46 253 -198 5 1414 1783 112 21 5 chr6 108690141 108690436 -40826601 - ORR1B2 LTR MaLR 0 378 87 5 1414 371 265 39 0 chr6 108690628 108690730 -40826307 + MLT1B LTR MaLR 113 218 -454 5 1414 1115 192 20 5 chr6 108691281 108691485 -40825552 - B3 SINE B2 -7 209 3 5 1414 1164 301 53 17 chr6 108691489 108691847 -40825190 + MTEb LTR MaLR 3 373 -6 5 1414 1340 207 93 76 chr6 108691850 108692046 -40824991 + MTD LTR MaLR 5 209 -210 5 1414 1180 76 0 0 chr6 108692046 108692191 -40824846 + B1_Mm SINE Alu 1 145 -2 5 1414 1340 207 93 76 chr6 108692191 108692402 -40824635 + MTD LTR MaLR 210 419 0 5 1414 187 411 35 21 chr6 108692538 108692682 -40824355 + L2b LINE L2 3226 3371 -4 5 1414 1219 68 24 6 chr6 108692880 108693044 -40823993 + B2_Mm2 SINE B2 2 168 -27 5 1414 338 0 0 23 chr6 108693129 108693172 -40823865 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 5 1414 1091 78 0 14 chr6 108693174 108693317 -40823720 - B1_Mm SINE Alu -6 141 1 5 1414 576 298 40 10 chr6 108693350 108693550 -40823487 - Lx8 LINE L1 -158 7315 7110 5 1414 243 231 0 82 chr6 108693667 108693752 -40823285 + Charlie1b DNA MER1_type 439 516 -7 5 1414 390 286 247 5 chr6 108693824 108694010 -40823027 - MLT1K LTR MaLR -166 429 199 5 1414 397 47 0 30 chr6 108694136 108694202 -40822835 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1414 241 212 59 29 chr6 108694590 108694658 -40822379 - ID4 SINE ID -11 72 3 5 1414 680 230 0 21 chr6 108694711 108694853 -40822184 + B1F SINE Alu 8 146 -3 5 1414 489 267 0 19 chr6 108694927 108695034 -40822003 + ID_B1 SINE B4 71 175 -49 5 1414 224 312 169 28 chr6 108695922 108696064 -40820973 - MIRb SINE MIR -3 265 104 5 1414 4723 23 0 0 chr6 108696092 108696624 -40820413 - L1Md_A LINE L1 0 6582 6051 5 1414 1270 34 0 0 chr6 108696856 108697003 -40820034 - B1_Mm SINE Alu 0 147 1 5 1414 330 264 0 0 chr6 108697003 108697075 -40819962 - RSINE1 SINE B4 -60 105 34 5 1414 2855 42 28 19 chr6 108697115 108697479 -40819558 - L1_Mus1 LINE L1 0 6567 6201 5 1414 377 250 19 28 chr6 108697665 108697772 -40819265 - B3A SINE B2 0 198 93 5 1414 894 193 12 24 chr6 108697768 108697933 -40819104 - ORR1B1 LTR MaLR -12 382 220 5 1414 1131 156 136 5 chr6 108698559 108698765 -40818272 - ORR1B1 LTR MaLR -161 233 1 5 1414 982 280 98 32 chr6 108698806 108699212 -40817825 + MT2A LTR ERVL 3 435 -98 5 1414 1469 231 94 55 chr6 108699224 108699641 -40817396 + MT2A LTR ERVL 1 434 -99 5 1414 5618 121 70 7 chr6 108699641 108700542 -40816495 + RMER17B LTR ERVK 1 958 0 5 1414 1469 231 94 55 chr6 108700542 108700637 -40816400 + MT2A LTR ERVL 435 533 0 5 1414 232 235 152 10 chr6 108700637 108700715 -40816322 + MT2A LTR ERVL 440 531 -2 5 1414 444 224 121 0 chr6 108700808 108700924 -40816113 - MER2 DNA MER2_type -117 228 99 5 1414 300 120 0 5 chr6 108700998 108701066 -40815971 - MT2A LTR ERVL 0 601 478 5 1414 22 0 0 0 chr6 108701067 108701089 -40815948 + AT_rich Low_complexity Low_complexity 1 22 0 5 1414 231 255 101 101 chr6 108701558 108701667 -40815370 + RSINE1 SINE B4 3 111 -54 5 1414 315 71 0 0 chr6 108701706 108701748 -40815289 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 5 1414 445 323 34 53 chr6 108701935 108702141 -40814896 + ID_B1 SINE B4 2 203 -21 5 1414 744 115 0 0 chr6 108702141 108702254 -40814783 + (GGAA)n Simple_repeat Simple_repeat 1 113 0 5 1414 211 244 0 0 chr6 108702930 108702975 -40814062 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 5 1414 252 0 0 0 chr6 108703087 108703115 -40813922 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1414 301 324 141 0 chr6 108703170 108703340 -40813697 - ERVL-E-int LTR ERVL -116 5551 5358 5 1414 318 26 0 0 chr6 108703344 108703383 -40813654 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1414 744 317 38 29 chr6 108703391 108703636 -40813401 + ID_B1 SINE B4 1 248 -44 5 1414 29 47 0 0 chr6 108703802 108703845 -40813192 + AT_rich Low_complexity Low_complexity 1 43 0 5 1414 837 197 53 11 chr6 108703849 108704039 -40812998 - B3A SINE B2 0 198 1 5 1414 1135 20 27 20 chr6 108704298 108704447 -40812590 + L1Md_F3 LINE L1 6435 6584 0 5 1414 3687 193 47 35 chr6 108704470 108705250 -40811787 + RLTR40 LTR ERVK 21 810 -7 5 1414 983 193 22 140 chr6 108705345 108705616 -40811421 - RLTR42 LTR ERVK 0 239 1 5 1414 1379 162 4 17 chr6 108705616 108705855 -40811182 - RLTR42-int LTR ERVK 0 5522 5287 5 1414 782 244 53 134 chr6 108705855 108706212 -40810825 - RMER10A LTR ERVL -13 429 100 5 1414 1124 158 44 53 chr6 108706212 108706386 -40810651 - URR1B DNA MER1_type 0 225 59 5 1414 378 0 0 0 chr6 108706386 108706428 -40810609 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1414 1124 158 44 53 chr6 108706428 108706480 -40810557 - URR1B DNA MER1_type -167 58 2 5 1414 782 244 53 134 chr6 108706480 108706577 -40810460 - RMER10A LTR ERVL -343 99 12 5 1414 6601 180 143 65 chr6 108706584 108708144 -40808893 - RLTR42-int LTR ERVK -221 5301 3593 5 1414 1231 55 0 0 chr6 108708144 108708289 -40808748 + B1_Mus2 SINE Alu 2 146 -1 5 1414 6601 180 143 65 chr6 108708289 108708600 -40808437 - RLTR42-int LTR ERVK -1930 3592 3286 5 1414 727 176 7 64 chr6 108708600 108708740 -40808297 - B1_Mur4 SINE Alu -8 142 11 5 1414 364 272 35 88 chr6 108708646 108708759 -40808278 - MT2B LTR ERVL -344 257 151 5 1414 713 178 262 6 chr6 108708790 108708954 -40808083 - B3 SINE B2 -10 206 1 5 1414 440 70 27 14 chr6 108708954 108709027 -40808010 - RLTR42-int LTR ERVK -2225 3297 3224 5 1414 2510 207 33 38 chr6 108709625 108710202 -40806835 + L1_Mur3 LINE L1 273 846 -6882 5 1414 265 146 0 0 chr6 108710202 108710243 -40806794 + RLTR17 LTR ERVK 651 691 -1 5 1414 1085 189 141 47 chr6 108710244 108710521 -40806516 + ORR1A4 LTR MaLR 19 321 -8 5 1414 2459 141 44 18 chr6 108710524 108710978 -40806059 + L1_Mur3 LINE L1 5066 5531 -349 5 1414 516 252 0 9 chr6 108711341 108711449 -40805588 + B3A SINE B2 24 130 -68 5 1414 432 82 0 0 chr6 108711467 108711528 -40805509 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1414 834 245 42 19 chr6 108711581 108711797 -40805240 - ID_B1 SINE B4 -2 222 2 5 1414 762 153 13 13 chr6 108711797 108711923 -40805114 + T-rich Low_complexity Low_complexity 36 162 0 5 1414 1175 51 0 43 chr6 108711923 108712107 -40804930 + (TTCCC)n Simple_repeat Simple_repeat 3 178 0 5 1414 762 153 13 13 chr6 108712107 108712139 -40804898 + T-rich Low_complexity Low_complexity 4 35 0 5 1414 498 255 10 0 chr6 108712149 108712247 -40804790 - PB1D10 SINE Alu -7 110 12 5 1414 622 284 118 17 chr6 108712502 108712799 -40804238 + L1MC1 LINE L1 5915 6241 -92 5 1414 227 31 0 30 chr6 108712871 108712904 -40804133 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1414 1223 68 0 0 chr6 108712958 108713105 -40803932 + B1_Mus2 SINE Alu 1 147 0 5 1414 607 84 0 21 chr6 108713180 108713277 -40803760 + (TCCC)n Simple_repeat Simple_repeat 4 98 0 5 1414 292 343 29 15 chr6 108713326 108713349 -40803688 - B1F1 SINE Alu -8 141 4 5 1414 347 339 9 9 chr6 108713349 108713462 -40803575 - ID_B1 SINE B4 -27 197 85 5 1414 620 253 75 0 chr6 108713661 108713807 -40803230 - RSINE1 SINE B4 0 165 9 5 1414 183 42 0 0 chr6 108713986 108714010 -40803027 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1414 1106 72 0 0 chr6 108714010 108714148 -40802889 - B1_Mus1 SINE Alu -9 139 2 6 1414 26 0 0 0 chr6 108714157 108714183 -40802854 + AT_rich Low_complexity Low_complexity 1 26 0 6 1414 1347 256 53 45 chr6 108714472 108714848 -40802189 - MTE2b LTR MaLR 0 379 1 6 1414 205 272 170 39 chr6 108715291 108715448 -40801589 - MIRb SINE MIR -30 238 57 6 1414 432 0 0 0 chr6 108715465 108715513 -40801524 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 6 1414 492 18 0 0 chr6 108715516 108715573 -40801464 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 6 1414 293 247 126 21 chr6 108715573 108715668 -40801369 - PB1D9 SINE Alu -3 117 13 6 1414 1061 122 0 0 chr6 108715671 108715818 -40801219 + B1_Mus1 SINE Alu 2 148 0 6 1414 484 294 48 0 chr6 108715848 108715974 -40801063 - B1F SINE Alu 0 149 18 6 1414 344 22 0 22 chr6 108716128 108716174 -40800863 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1414 575 302 12 41 chr6 108716213 108716382 -40800655 - B3A SINE B2 -34 164 1 6 1414 1141 49 0 21 chr6 108716462 108716597 -40800440 + B1_Mus2 SINE Alu 2 136 -11 6 1414 288 0 0 0 chr6 108716597 108716629 -40800408 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1414 387 0 0 0 chr6 108716719 108716762 -40800275 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 1414 387 0 0 0 chr6 108716805 108716848 -40800189 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 1414 279 0 0 0 chr6 108716892 108716923 -40800114 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1414 1170 175 14 5 chr6 108717018 108717225 -40799812 + RLTR28 LTR ERVL 10 218 -306 6 1414 472 225 0 0 chr6 108717224 108717304 -40799733 - B1_Mur3 SINE Alu -67 82 3 6 1414 699 46 0 0 chr6 108717416 108717503 -40799534 + (TTTCC)n Simple_repeat Simple_repeat 3 89 0 6 1414 776 38 9 0 chr6 108717504 108717609 -40799428 - L1_Mus1 LINE L1 -1 6566 6461 6 1414 590 94 0 0 chr6 108717609 108717694 -40799343 + L1_Mm LINE L1 2397 2481 -3402 6 1414 960 69 8 8 chr6 108717694 108717825 -40799212 - B2_Mm1a SINE B2 -62 131 1 6 1414 886 181 128 0 chr6 108717892 108718080 -40798957 - B3 SINE B2 0 216 5 6 1414 420 20 0 0 chr6 108718122 108718171 -40798866 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1414 1872 215 79 22 chr6 108718275 108718769 -40798268 + RLTR11A2 LTR ERVK 6 527 0 6 1414 409 254 53 53 chr6 108718785 108718918 -40798119 - B4A SINE B4 -149 143 11 6 1414 215 250 49 73 chr6 108718846 108718928 -40798109 - B2_Mm1t SINE B2 -113 80 1 6 1414 610 247 85 85 chr6 108718934 108719111 -40797926 - B3A SINE B2 -3 195 17 6 1414 1109 92 0 0 chr6 108719582 108719723 -40797314 + B1_Mus2 SINE Alu 1 141 -6 6 1414 486 0 0 0 chr6 108719724 108719778 -40797259 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1414 279 0 0 0 chr6 108719897 108719928 -40797109 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1414 297 243 103 37 chr6 108719967 108720074 -40796963 + B1F SINE Alu 1 114 -35 6 1414 415 255 19 19 chr6 108720070 108720178 -40796859 + RSINE1 SINE B4 6 113 -52 6 1414 1230 51 53 69 chr6 108720808 108720997 -40796040 - B2_Mm2 SINE B2 -9 186 1 6 1414 592 248 21 0 chr6 108721157 108721298 -40795739 - B1F2 SINE Alu -3 146 3 6 1414 476 141 0 115 chr6 108721547 108721643 -40795394 + PB1D10 SINE Alu 32 116 -1 6 1414 315 246 16 0 chr6 108721645 108721706 -40795331 + B4A SINE B4 84 145 -147 6 1414 374 149 0 0 chr6 108721655 108721717 -40795320 + B1_Mus1 SINE Alu 10 71 -49 6 1414 479 284 0 0 chr6 108721743 108721859 -40795178 + ID_B1 SINE B4 105 220 -4 6 1414 246 309 0 0 chr6 108722045 108722060 -40794977 + ID4 SINE ID 20 74 -9 6 1414 258 175 0 0 chr6 108722060 108722100 -40794937 + tRNA-Ala-GCY_ tRNA tRNA 29 68 -7 6 1414 1309 30 12 0 chr6 108722100 108722266 -40794771 + (GAA)n Simple_repeat Simple_repeat 2 169 0 6 1414 449 235 57 29 chr6 108722292 108722397 -40794640 + PB1D10 SINE Alu 5 112 -5 6 1414 1302 54 0 0 chr6 108722531 108722809 -40794228 + (TG)n Simple_repeat Simple_repeat 1 278 0 6 1414 467 239 111 0 chr6 108723326 108723443 -40793594 + ID_B1 SINE B4 84 213 -11 6 1414 377 228 23 130 chr6 108723443 108723457 -40793580 + PB1D7 SINE Alu 3 119 -1 6 1414 334 321 29 0 chr6 108723489 108723629 -40793408 + B1_Mur1 SINE Alu 4 147 -2 6 1414 618 193 110 0 chr6 108723755 108723900 -40793137 - MTD LTR MaLR -10 409 249 6 1414 342 45 0 0 chr6 108723900 108723944 -40793093 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1414 300 237 79 0 chr6 108723957 108724033 -40793004 - ID4_ SINE ID 0 83 2 6 1414 210 260 0 39 chr6 108724151 108724203 -40792834 + polypurine Low_complexity Low_complexity 4 53 0 6 1414 839 74 25 0 chr6 108724226 108724348 -40792689 + (GAGAA)n Simple_repeat Simple_repeat 5 129 0 6 1414 580 284 40 35 chr6 108724605 108724806 -40792231 - B4A SINE B4 -89 203 2 6 1414 364 223 164 8 chr6 108724957 108725079 -40791958 - B1F2 SINE Alu -8 141 1 6 1414 351 0 0 0 chr6 108725154 108725193 -40791844 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1414 276 266 152 27 chr6 108725209 108725321 -40791716 - RSINE1 SINE B4 -37 128 3 6 1414 1254 96 17 6 chr6 108725340 108725518 -40791519 - B2_Mm2 SINE B2 -14 181 2 6 1414 225 266 25 25 chr6 108725686 108725767 -40791270 - PB1D10 SINE Alu -7 110 30 6 1414 22 0 0 0 chr6 108725773 108725795 -40791242 + AT_rich Low_complexity Low_complexity 1 22 0 6 1414 282 29 0 0 chr6 108726199 108726234 -40790803 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1414 468 0 0 0 chr6 108726323 108726375 -40790662 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1414 378 181 56 0 chr6 108726384 108726456 -40790581 - B1_Mur2 SINE Alu -8 141 66 6 1414 455 249 235 11 chr6 108726459 108726646 -40790391 + MTD LTR MaLR 152 380 -39 6 1414 212 0 36 0 chr6 108726647 108726675 -40790362 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1414 232 175 0 17 chr6 108726675 108726699 -40790338 + T-rich Low_complexity Low_complexity 35 58 0 6 1414 1140 56 28 0 chr6 108726699 108726843 -40790194 - B1_Mus1 SINE Alu 0 148 1 6 1414 232 175 0 17 chr6 108726843 108726876 -40790161 + T-rich Low_complexity Low_complexity 3 34 0 6 1414 1353 194 140 113 chr6 108726928 108727892 -40789145 - RMER13B LTR ERVK -4 904 1 6 1414 267 31 0 0 chr6 108728330 108728362 -40788675 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1414 892 257 78 62 chr6 108728385 108728758 -40788279 + RLTR14 LTR ERV1 1 379 -3 6 1414 256 240 53 0 chr6 108728802 108728877 -40788160 + ID_B1 SINE B4 141 219 -5 6 1414 238 347 0 0 chr6 108728941 108729013 -40788024 - B1F2 SINE Alu -70 79 8 6 1414 518 339 16 11 chr6 108729081 108729269 -40787768 - ID_B1 SINE B4 -21 203 15 6 1414 880 222 53 122 chr6 108729334 108729637 -40787400 - B4A SINE B4 -6 286 5 6 1414 393 292 25 8 chr6 108729813 108729934 -40787103 + ID_B1 SINE B4 93 215 -9 6 1414 510 17 0 0 chr6 108729934 108729993 -40787044 + (CAG)n Simple_repeat Simple_repeat 1 59 0 6 1414 292 270 89 10 chr6 108730245 108730346 -40786691 - MLT1C LTR MaLR -3 464 356 6 1414 276 100 0 0 chr6 108730399 108730439 -40786598 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1414 1177 61 0 0 chr6 108730439 108730586 -40786451 - B1_Mm SINE Alu 0 147 1 6 1414 1634 41 0 10 chr6 108730625 108730821 -40786216 - B2_Mm2 SINE B2 -1 194 1 6 1414 415 314 0 41 chr6 108730868 108730991 -40786046 - RSINE1 SINE B4 -12 153 36 6 1414 513 119 0 0 chr6 108731119 108731220 -40785817 + (TC)n Simple_repeat Simple_repeat 2 102 0 6 1414 414 0 0 0 chr6 108731220 108731266 -40785771 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1414 645 222 159 21 chr6 108731281 108731470 -40785567 + B3 SINE B2 1 215 -1 6 1414 233 264 166 45 chr6 108731987 108732235 -40784802 + L2b LINE L2 3059 3348 -78 6 1414 235 180 20 0 chr6 108732300 108732350 -40784687 - Lx4B LINE L1 -4 7054 7004 6 1414 275 242 0 31 chr6 108732360 108732424 -40784613 - ID4_ SINE ID -20 63 2 6 1414 639 249 20 45 chr6 108732569 108732771 -40784266 - B3A SINE B2 -1 197 1 6 1414 316 214 0 0 chr6 108732785 108732841 -40784196 - ID_B1 SINE B4 -72 152 97 6 1414 188 135 0 26 chr6 108732868 108732906 -40784131 + GA-rich Low_complexity Low_complexity 1 37 0 6 1414 191 331 167 31 chr6 108734782 108734944 -40782093 + MIRb SINE MIR 8 191 -77 6 1414 228 274 0 59 chr6 108735259 108735360 -40781677 + L1MA7 LINE L1 6193 6287 -4 6 1414 406 242 15 95 chr6 108735372 108735509 -40781528 + B1F2 SINE Alu 6 131 -18 6 1414 400 269 46 0 chr6 108735655 108735763 -40781274 - B1F1 SINE Alu -1 148 36 6 1414 1119 89 0 0 chr6 108736214 108736360 -40780677 - B1_Mus2 SINE Alu 0 147 2 6 1414 238 307 34 0 chr6 108736376 108736464 -40780573 - PB1D7 SINE Alu -21 99 9 6 1414 440 198 123 0 chr6 108736683 108736789 -40780248 + B3A SINE B2 1 119 -79 6 1414 236 275 37 24 chr6 108737004 108737086 -40779951 - ID4_ SINE ID 0 83 1 6 1414 328 260 42 0 chr6 108737238 108737334 -40779703 - B1F SINE Alu -2 147 48 6 1414 295 326 43 7 chr6 108737334 108737377 -40779660 - ID_B1 SINE B4 -2 222 79 6 1414 1209 15 0 0 chr6 108738116 108738253 -40778784 + B1_Mm SINE Alu 1 137 -10 6 1414 186 43 0 0 chr6 108738253 108738276 -40778761 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1414 23 0 0 0 chr6 108738465 108738488 -40778549 + AT_rich Low_complexity Low_complexity 1 23 0 7 1414 450 0 0 0 chr6 108738503 108738553 -40778484 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 7 1414 22 0 0 0 chr6 108738585 108738607 -40778430 + AT_rich Low_complexity Low_complexity 1 22 0 7 1414 414 0 0 0 chr6 108738622 108738668 -40778369 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 7 1414 634 219 138 0 chr6 108738675 108738835 -40778202 + B3A SINE B2 1 182 -16 7 1414 405 142 313 17 chr6 108739685 108739800 -40777237 - B2_Mm2 SINE B2 0 195 47 7 1414 1280 102 11 0 chr6 108739853 108740029 -40777008 - B2_Mm1t SINE B2 -14 179 2 7 1414 238 226 62 31 chr6 108740264 108740328 -40776709 + RSINE1 SINE B4 67 132 -33 7 1414 698 142 61 47 chr6 108740475 108740623 -40776414 - B1_Mur4 SINE Alu 0 150 1 7 1414 526 284 8 0 chr6 108740833 108740967 -40776070 - RSINE1 SINE B4 -29 136 2 7 1414 815 153 57 6 chr6 108740980 108741138 -40775899 - B2_Mm2 SINE B2 -1 194 29 7 1414 912 152 139 33 chr6 108741695 108741940 -40775097 - MTD LTR MaLR 0 419 149 7 1414 461 261 8 23 chr6 108742270 108742403 -40774634 - MTD LTR MaLR -288 131 1 7 1414 458 243 48 19 chr6 108742737 108742842 -40774195 - RSINE1 SINE B4 -57 108 1 7 1414 467 202 143 0 chr6 108743013 108743132 -40773905 + B1F SINE Alu 7 142 -7 7 1414 553 239 67 0 chr6 108743500 108743634 -40773403 + B1_Mur1 SINE Alu 2 144 -5 7 1414 254 263 68 2 chr6 108744055 108744121 -40772916 - BC1_Mm scRNA scRNA -14 69 1 7 1414 345 151 305 42 chr6 108744135 108744253 -40772784 - B2_Mm2 SINE B2 0 195 47 7 1414 1224 108 17 0 chr6 108744303 108744479 -40772558 - B2_Mm1t SINE B2 -14 179 1 7 1414 222 309 15 0 chr6 108745121 108745189 -40771848 + PB1D10 SINE Alu 13 81 -36 7 1414 240 250 159 16 chr6 108745205 108745331 -40771706 - B1F1 SINE Alu -1 148 5 7 1414 459 256 101 38 chr6 108745748 108745906 -40771131 - B3 SINE B2 -3 213 46 7 1414 27 0 0 0 chr6 108746260 108746287 -40770750 + AT_rich Low_complexity Low_complexity 1 27 0 7 1414 641 245 0 28 chr6 108746295 108746438 -40770599 - B1F SINE Alu -9 140 2 7 1414 249 33 0 0 chr6 108746476 108746506 -40770531 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1414 252 0 0 0 chr6 108746506 108746533 -40770504 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 1414 579 236 344 48 chr6 108746761 108747054 -40769983 + ORR1E LTR MaLR 1 374 -5 7 1414 458 145 0 0 chr6 108747330 108747399 -40769638 - ID4_ SINE ID -13 70 2 7 1414 195 100 0 0 chr6 108747469 108747499 -40769538 + (TTCG)n Simple_repeat Simple_repeat 2 31 0 7 1414 289 348 0 0 chr6 108747529 108747618 -40769419 - PB1D10 SINE Alu -28 89 1 7 1414 352 205 24 12 chr6 108748075 108748159 -40768878 + ORR1D1 LTR MaLR 288 372 -2 7 1414 330 272 43 0 chr6 108748247 108748339 -40768698 + RSINE1 SINE B4 50 145 -20 7 1414 371 167 78 0 chr6 108748393 108748483 -40768554 + ID_B1 SINE B4 122 218 -6 7 1414 414 234 118 59 chr6 108748799 108748935 -40768102 + B4A SINE B4 125 268 -24 7 1414 279 260 40 40 chr6 108748930 108749006 -40768031 - ID_B1 SINE B4 -67 157 82 7 1414 389 257 173 13 chr6 108749263 108749413 -40767624 - L1M4c LINE L1 -4827 1557 1384 7 1414 1714 164 122 32 chr6 108749493 108749902 -40767135 - Lx9 LINE L1 -1 7643 7198 7 1414 239 196 0 111 chr6 108749936 108749999 -40767038 + B1F1 SINE Alu 1 56 -93 7 1414 8908 114 41 8 chr6 108750142 108751529 -40765508 - Lx3B LINE L1 -1 6972 5542 7 1414 545 287 15 0 chr6 108751873 108752009 -40765028 - B1_Mur1 SINE Alu -11 138 1 7 1414 343 219 13 27 chr6 108752045 108752120 -40764917 - PB1D10 SINE Alu -23 94 21 7 1414 525 154 0 0 chr6 108753136 108753227 -40763810 + (TA)n Simple_repeat Simple_repeat 2 92 0 7 1414 848 143 7 20 chr6 108753733 108753883 -40763154 - B1_Mur4 SINE Alu -2 148 1 7 1414 768 99 0 0 chr6 108754094 108754205 -40762832 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 7 1414 183 80 0 0 chr6 108755650 108755675 -40761362 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1414 425 340 52 29 chr6 108756095 108756375 -40760662 - RMER20B LTR ERVK -199 443 176 7 1414 397 282 120 60 chr6 108756849 108757049 -40759988 - B4 SINE B4 -78 214 3 7 1414 689 259 12 0 chr6 108757358 108757524 -40759513 - B3 SINE B2 -6 210 43 7 1414 584 239 189 0 chr6 108757556 108757736 -40759301 - B3 SINE B2 -1 215 2 7 1414 1174 183 9 19 chr6 108757745 108757957 -40759080 - B3 SINE B2 -5 211 2 7 1414 570 251 64 9 chr6 108758304 108758529 -40758508 - L1MB2 LINE L1 -400 5900 5648 7 1414 2741 204 6 8 chr6 108758522 108759031 -40758006 - Lx5 LINE L1 -324 6726 6219 7 1414 2389 146 9 26 chr6 108759029 108759255 -40757782 - L1_Mur2 LINE L1 -363 5514 5297 7 1414 1429 66 39 0 chr6 108759255 108759436 -40757601 - B2_Mm2 SINE B2 -6 189 2 7 1414 2389 146 9 26 chr6 108759436 108759637 -40757400 - L1_Mur2 LINE L1 -581 5296 5094 7 1414 300 227 166 61 chr6 108759877 108760013 -40757024 - L1MB8 LINE L1 -152 6027 5885 7 1414 492 206 9 36 chr6 108760013 108760124 -40756913 - PB1D10 SINE Alu 0 117 10 7 1414 290 273 57 87 chr6 108760629 108760723 -40756314 - L1MB2 LINE L1 -587 5596 5502 7 1414 459 243 44 26 chr6 108760723 108760837 -40756200 - PB1D10 SINE Alu 0 117 2 7 1414 317 224 35 51 chr6 108760837 108760974 -40756063 - L1MB2 LINE L1 -682 5501 5372 7 1414 701 176 95 7 chr6 108761018 108761155 -40755882 - B1_Mur4 SINE Alu -1 149 1 7 1414 386 287 0 36 chr6 108761197 108761309 -40755728 + B1F SINE Alu 3 110 -39 7 1414 244 303 74 27 chr6 108762260 108762409 -40754628 - RSINE1 SINE B4 -8 157 2 7 1414 710 173 146 36 chr6 108762752 108762944 -40754093 - B3 SINE B2 0 216 4 7 1414 240 222 19 0 chr6 108762982 108763036 -40754001 - B1_Mur3 SINE Alu -36 113 59 7 1414 212 255 0 0 chr6 108763057 108763108 -40753929 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 7 1414 366 250 0 74 chr6 108763175 108763296 -40753741 - PB1D7 SINE Alu -5 115 4 7 1414 264 122 0 0 chr6 108763334 108763375 -40753662 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1414 243 210 207 69 chr6 108763391 108763478 -40753559 - RSINE1 SINE B4 -37 128 30 7 1414 270 271 0 27 chr6 108763735 108763883 -40753154 + (TATG)n Simple_repeat Simple_repeat 2 145 0 7 1414 218 56 28 0 chr6 108764619 108764655 -40752382 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 7 1414 220 217 0 21 chr6 108765481 108765528 -40751509 + CT-rich Low_complexity Low_complexity 5 50 0 7 1414 214 240 20 0 chr6 108765565 108765615 -40751422 - B1_Mus1 SINE Alu -95 53 3 7 1414 540 320 34 5 chr6 108765615 108765805 -40751232 - MER2 DNA MER2_type -65 280 86 7 1414 405 0 0 0 chr6 108765805 108765850 -40751187 + (TCCCC)n Simple_repeat Simple_repeat 1 45 0 7 1414 540 320 34 5 chr6 108765850 108765864 -40751173 - MER2 DNA MER2_type -260 85 70 7 1414 367 300 64 0 chr6 108765874 108766014 -40751023 - B1F SINE Alu 0 149 1 7 1414 301 244 64 0 chr6 108766241 108766319 -40750718 + B1F SINE Alu 3 85 -64 7 1414 255 31 0 0 chr6 108767097 108767129 -40749908 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1414 429 219 2 0 chr6 108767129 108767222 -40749815 - B1_Mm SINE Alu -13 107 13 7 1414 628 249 104 71 chr6 108767261 108767529 -40749508 - Lx8 LINE L1 -84 7389 7113 7 1414 340 258 202 39 chr6 108767838 108767967 -40749070 - RSINE1 SINE B4 -14 151 2 7 1414 229 207 32 65 chr6 108768752 108768814 -40748223 + MER20 DNA MER1_type 33 92 -127 7 1414 547 289 0 0 chr6 108769063 108769205 -40747832 + B1F1 SINE Alu 1 142 -7 7 1414 485 220 11 0 chr6 108770309 108770400 -40746637 + PB1D9 SINE Alu 3 94 -26 7 1414 227 293 9 124 chr6 108770400 108770412 -40746625 + MT2B LTR ERVL 167 257 -344 7 1414 409 297 42 42 chr6 108770894 108771084 -40745953 + MER20 DNA MER1_type 30 219 0 7 1414 321 253 13 0 chr6 108773947 108774022 -40743015 - ID4_ SINE ID -5 78 3 7 1414 189 0 0 0 chr6 108774024 108774045 -40742992 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1414 471 295 83 73 chr6 108774121 108774410 -40742627 + B4A SINE B4 1 292 0 7 1414 378 194 50 0 chr6 108774700 108774793 -40742244 - PB1D7 SINE Alu -4 123 16 7 1414 401 230 11 0 chr6 108776359 108776446 -40740591 - B1_Mur3 SINE Alu -61 88 1 7 1414 284 247 68 0 chr6 108776902 108776975 -40740062 + PB1D9 SINE Alu 35 112 -8 7 1414 201 94 0 0 chr6 108777708 108777740 -40739297 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1414 26 82 0 0 chr6 108778533 108778594 -40738443 + GC_rich Low_complexity Low_complexity 1 61 0 7 1414 207 259 35 21 chr6 108779345 108779438 -40737599 - MIRc SINE MIR -71 197 100 7 1414 550 211 26 58 chr6 108780134 108780290 -40736747 + RSINE1 SINE B4 3 153 -12 7 1414 234 91 0 0 chr6 108780589 108780622 -40736415 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1414 1238 34 7 0 chr6 108780622 108780768 -40736269 - B1_Mus2 SINE Alu 0 147 1 7 1414 231 204 0 0 chr6 108780937 108780986 -40736051 + C-rich Low_complexity Low_complexity 5 53 0 7 1414 464 48 16 0 chr6 108781098 108781161 -40735876 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 7 1414 220 27 0 51 chr6 108782188 108782227 -40734810 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 7 1414 312 255 121 93 chr6 108782654 108782836 -40734201 + B3A SINE B2 3 189 -9 7 1414 345 206 0 0 chr6 108782846 108782909 -40734128 + ID4_ SINE ID 2 64 -19 7 1414 269 238 155 19 chr6 108783074 108783177 -40733860 - ID_B1 SINE B4 -10 214 98 7 1414 543 279 137 22 chr6 108783607 108783834 -40733203 + B4A SINE B4 1 253 -39 8 1414 279 0 0 0 chr6 108783897 108783928 -40733109 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1414 270 184 13 26 chr6 108784311 108784389 -40732648 + CT-rich Low_complexity Low_complexity 3 79 0 8 1414 234 259 32 0 chr6 108785018 108785090 -40731947 - ID4 SINE ID -8 75 2 8 1414 226 283 154 36 chr6 108785637 108785747 -40731290 - RMER21B LTR ERV1 -242 600 478 8 1414 371 294 123 0 chr6 108785800 108785946 -40731091 - RSINE1 SINE B4 0 165 2 8 1414 697 157 391 51 chr6 108787214 108787490 -40729547 - ORR1D2 LTR MaLR 0 370 1 8 1414 220 287 92 41 chr6 108788908 108789006 -40728031 + MIRm SINE MIR 172 274 -2 8 1414 21 0 0 0 chr6 108789147 108789168 -40727869 + AT_rich Low_complexity Low_complexity 1 21 0 8 1415 287 238 0 16 chr6 108789868 108789932 -40727105 + PB1D7 SINE Alu 21 83 -37 8 1415 312 293 19 39 chr6 108789996 108790099 -40726938 + PB1D10 SINE Alu 16 116 -1 8 1415 665 256 18 53 chr6 108790101 108790270 -40726767 + RSINE1 SINE B4 3 165 0 8 1415 21 0 0 0 chr6 108790320 108790341 -40726696 + AT_rich Low_complexity Low_complexity 1 21 0 8 1415 194 309 92 41 chr6 108790482 108790580 -40726457 - MIRm SINE MIR -2 274 172 8 1415 357 331 97 35 chr6 108790984 108791128 -40725909 - RSINE1 SINE B4 -2 163 11 8 1415 351 0 0 0 chr6 108791728 108791767 -40725270 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1415 249 109 0 0 chr6 108791880 108791926 -40725111 + (T)n Simple_repeat Simple_repeat 1 46 0 8 1415 1088 90 14 0 chr6 108791926 108792071 -40724966 - B1_Mus1 SINE Alu 0 148 2 8 1415 180 0 0 0 chr6 108792873 108792893 -40724144 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1415 385 276 8 25 chr6 108793116 108793235 -40723802 - PB1D10 SINE Alu 0 117 1 8 1415 583 211 58 0 chr6 108793406 108793510 -40723527 - B3 SINE B2 -106 110 1 8 1415 1005 253 74 82 chr6 108794046 108794399 -40722638 - ORR1E LTR MaLR -5 354 5 8 1415 487 241 45 0 chr6 108794649 108794780 -40722257 - B1F SINE Alu 0 149 11 8 1415 477 223 39 0 chr6 108795773 108795876 -40721161 + PB1D7 SINE Alu 2 108 -12 8 1415 277 250 82 14 chr6 108796176 108796249 -40720788 - ID4_ SINE ID -1 82 5 8 1415 198 0 0 0 chr6 108796637 108796659 -40720378 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1415 235 200 0 22 chr6 108796959 108797005 -40720032 - RSINE1 SINE B4 -17 148 104 8 1415 380 289 61 9 chr6 108797239 108797354 -40719683 - RSINE1 SINE B4 -17 148 28 8 1415 295 284 137 0 chr6 108797395 108797490 -40719547 - B1F1 SINE Alu -18 131 24 8 1415 613 275 41 70 chr6 108797500 108797672 -40719365 + B3A SINE B2 40 206 -10 8 1415 219 103 0 0 chr6 108797696 108797735 -40719302 + (A)n Simple_repeat Simple_repeat 1 39 0 8 1415 289 236 27 40 chr6 108797974 108798049 -40718988 - PB1D10 SINE Alu -43 74 1 8 1415 1187 75 0 0 chr6 108798357 108798504 -40718533 + B1_Mus1 SINE Alu 2 148 0 8 1415 249 33 0 0 chr6 108798504 108798534 -40718503 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1415 529 224 19 93 chr6 108798849 108799011 -40718026 + B4A SINE B4 2 151 -73 8 1415 462 49 0 0 chr6 108799134 108799195 -40717842 + (CA)n Simple_repeat Simple_repeat 1 61 0 8 1415 187 56 83 0 chr6 108799195 108799231 -40717806 + (GGGA)n Simple_repeat Simple_repeat 2 40 0 8 1415 1325 62 0 0 chr6 108799692 108799871 -40717166 - L1Md_F2 LINE L1 0 6582 6404 8 1415 533 158 0 10 chr6 108799969 108800071 -40716966 + CT-rich Low_complexity Low_complexity 2 102 0 8 1415 244 208 0 0 chr6 108800215 108800263 -40716774 - RLTR15 LTR ERVK -307 52 5 8 1415 194 91 0 29 chr6 108800263 108800297 -40716740 + (TCTCCC)n Simple_repeat Simple_repeat 6 38 0 8 1415 1374 160 5 0 chr6 108801379 108801585 -40715452 - B3 SINE B2 -8 208 2 8 1415 22 0 0 0 chr6 108801594 108801616 -40715421 + AT_rich Low_complexity Low_complexity 1 22 0 8 1415 351 282 48 0 chr6 108801638 108801741 -40715296 - B3A SINE B2 -90 108 1 8 1415 256 272 35 47 chr6 108801776 108801861 -40715176 - RSINE1 SINE B4 0 165 82 8 1415 247 310 0 0 chr6 108802884 108802942 -40714095 - ID4_ SINE ID -20 63 6 8 1415 218 235 73 0 chr6 108803880 108803948 -40713089 - ID4_ SINE ID -9 74 2 8 1415 663 94 0 0 chr6 108803973 108804069 -40712968 + (TCCC)n Simple_repeat Simple_repeat 4 99 0 8 1415 647 242 24 0 chr6 108804075 108804199 -40712838 - B1_Mur1 SINE Alu -21 128 2 8 1415 199 274 13 52 chr6 108804363 108804440 -40712597 - MIRm SINE MIR -60 216 143 8 1415 289 283 48 39 chr6 108804497 108804600 -40712437 - LTR33 LTR ERVL -6 509 406 8 1415 379 284 74 59 chr6 108804802 108804937 -40712100 - ID_B1 SINE B4 0 224 88 8 1415 317 295 70 21 chr6 108804938 108805080 -40711957 - LTR33 LTR ERVL -343 172 24 8 1415 210 271 102 0 chr6 108805163 108805222 -40711815 - B1F1 SINE Alu -10 139 75 8 1415 542 257 45 51 chr6 108805231 108805387 -40711650 + MER20 DNA MER1_type 38 192 -27 8 1415 202 73 0 47 chr6 108806372 108806415 -40710622 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 8 1415 222 37 0 0 chr6 108807427 108807454 -40709583 + (TC)n Simple_repeat Simple_repeat 2 28 0 8 1415 211 28 0 53 chr6 108807455 108807493 -40709544 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 8 1415 929 174 0 0 chr6 108809796 108809945 -40707092 + B1_Mur4 SINE Alu 2 150 0 8 1415 461 190 57 57 chr6 108810238 108810361 -40706676 + B3 SINE B2 84 206 -10 8 1415 470 237 31 78 chr6 108810656 108810784 -40706253 - B3A SINE B2 -7 191 70 8 1415 384 225 21 43 chr6 108810784 108810877 -40706160 - B1_Mur2 SINE Alu -52 97 7 8 1415 351 0 0 0 chr6 108811056 108811095 -40705942 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1415 315 0 0 0 chr6 108811095 108811129 -40705908 + (GA)n Simple_repeat Simple_repeat 1 35 0 8 1415 315 0 0 0 chr6 108812190 108812225 -40704812 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8 1415 2724 162 94 2 chr6 108812225 108812725 -40704312 - RMER1B Other Other -15 1051 506 8 1415 3869 155 60 64 chr6 108812725 108813502 -40703535 + RLTR25B LTR ERVK 1 774 -254 8 1415 360 176 0 0 chr6 108813527 108813595 -40703442 + T-rich Low_complexity Low_complexity 1 68 0 8 1415 252 0 0 0 chr6 108813677 108813705 -40703332 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 8 1415 1380 80 16 16 chr6 108813975 108814165 -40702872 - B2_Mm2 SINE B2 -5 190 1 8 1415 764 191 134 89 chr6 108814234 108814481 -40702556 + RLTR25B LTR ERVK 738 995 -33 8 1415 467 127 0 0 chr6 108814479 108814550 -40702487 - ORR1C2 LTR MaLR -30 354 284 8 1415 997 247 87 20 chr6 108814574 108814826 -40702211 - RMER1A Other Other -582 448 180 8 1415 636 270 76 153 chr6 108815030 108815515 -40701522 - RLTR12B LTR ERVK -34 494 47 8 1415 258 116 0 0 chr6 108815625 108815668 -40701369 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1415 275 262 179 28 chr6 108816061 108816167 -40700870 + ID_B1 SINE B4 94 215 -9 8 1415 2399 98 0 3 chr6 108816171 108816499 -40700538 - ORR1A2 LTR MaLR 0 327 1 8 1415 1143 277 106 3 chr6 108816514 108816891 -40700146 + Lx8 LINE L1 7055 7470 -3 8 1415 384 277 92 53 chr6 108817088 108817294 -40699743 - MLT1E2 LTR MaLR -188 439 226 8 1415 1256 41 0 0 chr6 108817827 108817973 -40699064 + B1_Mm SINE Alu 1 146 -1 8 1415 971 223 57 0 chr6 108818457 108818668 -40698369 + Lx8 LINE L1 7115 7337 -136 8 1415 237 250 6 200 chr6 108818713 108818735 -40698302 + Lx8 LINE L1 7333 7355 -118 8 1415 1172 106 6 0 chr6 108818735 108818914 -40698123 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 8 1415 2571 220 47 91 chr6 108818915 108819808 -40697229 + RLTR13A LTR ERVK 1 854 -1 8 1415 711 0 0 0 chr6 108819808 108819887 -40697150 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 8 1415 237 250 6 200 chr6 108819887 108820026 -40697011 + Lx8 LINE L1 7356 7464 -9 8 1415 1204 109 4 21 chr6 108820203 108820401 -40696636 - ORR1C2 LTR MaLR -12 372 132 8 1415 1889 175 126 5 chr6 108820417 108820791 -40696246 + MTC LTR MaLR 1 419 -2 8 1415 249 174 43 0 chr6 108820794 108820840 -40696197 - ORR1C2 LTR MaLR -336 48 1 8 1415 682 249 245 0 chr6 108820840 108821109 -40695928 - Lx7 LINE L1 -691 7005 6671 8 1415 912 300 53 53 chr6 108821075 108821189 -40695848 + Lx8 LINE L1 6291 6404 -1069 8 1415 1920 202 20 143 chr6 108821189 108821882 -40695155 - RMER19C LTR ERVK -1 610 3 8 1415 912 300 53 53 chr6 108821882 108822044 -40694993 + Lx8 LINE L1 6405 6551 -922 8 1415 5377 139 40 17 chr6 108822044 108822884 -40694153 + RMER13A LTR ERVK 1 860 0 8 1415 912 300 53 53 chr6 108822884 108822947 -40694090 + Lx8 LINE L1 6552 6630 -843 8 1415 1052 242 4 9 chr6 108822947 108823172 -40693865 - MTD LTR MaLR 0 419 196 8 1415 279 79 0 0 chr6 108823182 108823220 -40693817 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 8 1415 398 103 12 17 chr6 108823228 108823300 -40693737 - B2_Mm2 SINE B2 -95 121 47 8 1415 985 142 52 23 chr6 108823327 108823500 -40693537 - B2_Mm1t SINE B2 -13 180 3 8 1415 881 233 60 14 chr6 108823507 108823725 -40693312 - MTD LTR MaLR -191 228 1 8 1415 305 297 11 11 chr6 108823725 108823817 -40693220 + Lx7 LINE L1 6617 6708 -988 8 1415 523 288 129 82 chr6 108823838 108824156 -40692881 + MER54B LTR ERVL 147 479 -314 8 1415 263 274 82 74 chr6 108824249 108824371 -40692666 + MER54B LTR ERVL 671 793 0 8 1415 655 294 114 33 chr6 108824488 108824822 -40692215 + MLT1A LTR MaLR 1 361 -13 8 1415 260 300 88 44 chr6 108824880 108825016 -40692021 + MamRep564 Unknown Unknown 133 274 -83 8 1415 759 112 26 13 chr6 108826431 108826585 -40690452 + CT-rich Low_complexity Low_complexity 1 156 0 8 1415 386 325 19 25 chr6 108827157 108827315 -40689722 + MER5A DNA MER1_type 4 160 -29 8 1415 456 271 0 0 chr6 108827403 108827510 -40689527 + Tigger7 DNA MER2_type 9 115 -2376 8 1415 627 241 76 30 chr6 108827512 108827709 -40689328 + Tigger7 DNA MER2_type 2282 2487 -4 8 1415 199 286 110 41 chr6 108827899 108827972 -40689065 - L2a LINE L2 0 3426 3349 8 1415 866 181 11 0 chr6 108828029 108828206 -40688831 + CT-rich Low_complexity Low_complexity 1 179 0 8 1415 1192 49 0 0 chr6 108828207 108828349 -40688688 - B1_Mm SINE Alu -5 142 1 9 1415 1936 195 19 19 chr6 108828350 108828721 -40688316 - ORR1D1 LTR MaLR -3 371 1 9 1415 4236 144 28 13 chr6 108828869 108829614 -40687423 - RMER6A LTR ERVK 0 756 1 9 1415 717 67 0 0 chr6 108830946 108831050 -40685987 + (TG)n Simple_repeat Simple_repeat 2 105 0 9 1415 217 156 0 82 chr6 108831060 108831109 -40685928 - B3A SINE B2 -72 126 82 9 1415 1163 171 24 14 chr6 108831190 108831403 -40685634 - B3 SINE B2 -1 215 1 9 1415 666 279 56 5 chr6 108831416 108831614 -40685423 - ID_B1 SINE B4 -15 209 2 9 1415 317 274 113 21 chr6 108831702 108831799 -40685238 - PB1D10 SINE Alu 0 117 12 9 1415 268 155 69 0 chr6 108831878 108831936 -40685101 + RSINE1 SINE B4 83 144 -21 9 1415 21 0 0 0 chr6 108832668 108832689 -40684348 + AT_rich Low_complexity Low_complexity 1 21 0 9 1415 275 167 56 0 chr6 108832919 108832973 -40684064 + RSINE1 SINE B4 108 164 -1 9 1415 511 319 0 0 chr6 108833241 108833382 -40683655 - B1F SINE Alu -7 142 2 9 1415 585 264 105 38 chr6 108833428 108833637 -40683400 + ID_B1 SINE B4 2 224 0 9 1415 225 361 24 0 chr6 108834221 108834304 -40682733 + MLT1F2 LTR MaLR 6 90 -470 9 1415 490 190 41 170 chr6 108834433 108834604 -40682433 - B1_Mur3 SINE Alu 0 149 1 9 1415 352 363 91 47 chr6 108834612 108834887 -40682150 + MLT1F2 LTR MaLR 105 391 -169 9 1415 30 27 0 0 chr6 108834936 108834973 -40682064 + AT_rich Low_complexity Low_complexity 1 37 0 9 1415 246 302 0 45 chr6 108835037 108835103 -40681934 - ID4 SINE ID 0 83 21 9 1415 468 0 0 0 chr6 108835363 108835415 -40681622 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1415 253 349 78 0 chr6 108835877 108836006 -40681031 - MER117 DNA MER1_type -3 194 56 9 1415 7583 95 26 8 chr6 108836980 108838442 -40678595 + Lx LINE L1 5138 6627 -27 9 1415 199 0 31 31 chr6 108838442 108838474 -40678563 + (TAA)n Simple_repeat Simple_repeat 2 33 0 9 1415 453 36 0 0 chr6 108838561 108838616 -40678421 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 9 1415 3552 93 29 41 chr6 108838616 108839177 -40677860 + L1_Mur1 LINE L1 4703 5256 -630 9 1415 361 261 126 38 chr6 108839397 108839580 -40677457 + LTR84a LTR ERVL 240 438 -319 9 1415 354 23 0 0 chr6 108839720 108839763 -40677274 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1415 471 315 200 62 chr6 108839956 108840460 -40676577 - MLT1G3 LTR MaLR -18 577 4 9 1415 284 192 20 20 chr6 108841103 108841204 -40675833 + (TA)n Simple_repeat Simple_repeat 2 102 0 9 1415 2283 185 40 0 chr6 108841212 108841612 -40675425 - MTC LTR MaLR -5 416 1 9 1415 231 259 120 0 chr6 108841722 108841830 -40675207 + L1MC4 LINE L1 6563 6683 -1359 9 1415 349 278 25 25 chr6 108842272 108842390 -40674647 - Lx8 LINE L1 -269 7204 7087 9 1415 519 281 35 35 chr6 108842523 108842667 -40674370 - B1F2 SINE Alu -5 144 1 9 1415 183 80 0 0 chr6 108842673 108842698 -40674339 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 9 1415 605 231 58 0 chr6 108842732 108842853 -40674184 - RSINE1 SINE B4 -36 129 2 9 1415 227 313 0 15 chr6 108842909 108842977 -40674060 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 9 1415 274 232 23 47 chr6 108843463 108843549 -40673488 + L1MB8 LINE L1 6083 6166 -12 9 1415 29 0 0 0 chr6 108843549 108843578 -40673459 + AT_rich Low_complexity Low_complexity 1 29 0 9 1415 225 378 108 31 chr6 108845514 108845808 -40671229 + L2b LINE L2 3069 3383 -4 9 1415 199 296 14 14 chr6 108846117 108846189 -40670848 - MIR SINE MIR 0 262 191 9 1415 251 202 0 37 chr6 108846264 108846372 -40670665 + GA-rich Low_complexity Low_complexity 1 104 0 9 1415 369 0 0 0 chr6 108847546 108847587 -40669450 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1415 843 103 0 0 chr6 108847587 108847732 -40669305 + (GA)n Simple_repeat Simple_repeat 1 146 0 9 1415 889 330 61 28 chr6 108847954 108848137 -40668900 - MLT1E2 LTR MaLR -5 622 441 9 1415 387 0 0 0 chr6 108848137 108848180 -40668857 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1415 889 305 100 58 chr6 108848180 108848450 -40668587 - MLT1E2 LTR MaLR -183 441 144 9 1415 295 271 0 86 chr6 108848489 108848582 -40668455 - PB1D10 SINE Alu -6 111 27 9 1415 295 270 15 31 chr6 108849250 108849315 -40667722 - ID4_ SINE ID -5 78 15 9 1415 240 245 0 0 chr6 108849324 108849373 -40667664 - PB1 SINE Alu -3 124 76 9 1415 342 295 38 76 chr6 108849375 108849507 -40667530 - B1F1 SINE Alu -22 127 1 9 1415 286 364 18 0 chr6 108849515 108849625 -40667412 + L2a LINE L2 3278 3389 -37 9 1415 523 287 95 37 chr6 108849860 108849946 -40667091 - Lx9 LINE L1 -36 7608 7517 9 1415 423 0 0 0 chr6 108849946 108849993 -40667044 + (TA)n Simple_repeat Simple_repeat 2 48 0 9 1415 523 287 95 37 chr6 108849993 108850232 -40666805 - Lx9 LINE L1 -128 7516 7264 9 1415 361 299 21 43 chr6 108850232 108850372 -40666665 + RMER15 LTR ERVL 371 507 -68 9 1415 401 323 70 95 chr6 108850507 108850750 -40666287 + MLT1A LTR MaLR 12 248 -126 9 1415 2320 131 21 31 chr6 108850725 108851143 -40665894 + MTC-int LTR MaLR 842 1255 -3 9 1415 1352 152 0 0 chr6 108851146 108851356 -40665681 + MTC LTR MaLR 1 210 -211 9 1415 351 0 0 0 chr6 108851357 108851396 -40665641 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1415 227 288 34 67 chr6 108851794 108851913 -40665124 + L2c LINE L2 3273 3387 0 9 1415 419 143 74 19 chr6 108851919 108852022 -40665015 - MTD LTR MaLR 0 419 295 9 1415 231 200 20 0 chr6 108852056 108852106 -40664931 - Lx4B LINE L1 -57 7001 6951 9 1415 1253 216 98 33 chr6 108852121 108852428 -40664609 - MTD LTR MaLR -92 327 1 9 1415 1071 221 37 9 chr6 108852442 108852657 -40664380 + ORR1D2 LTR MaLR 123 343 -27 9 1415 4141 99 42 16 chr6 108852657 108853302 -40663735 + RMER17B LTR ERVK 1 662 -296 9 1415 251 288 17 0 chr6 108853897 108853956 -40663081 + ORR1E LTR MaLR 4 63 -296 9 1415 303 349 82 37 chr6 108854044 108854262 -40662775 + ORR1E LTR MaLR 101 346 -33 9 1415 632 149 57 5 chr6 108854672 108854818 -40662219 - B1_Mur3 SINE Alu 0 150 2 9 1415 1009 68 7 14 chr6 108855104 108855252 -40661785 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 9 1415 642 52 402 0 chr6 108855252 108855349 -40661688 - B1_Mus1 SINE Alu -12 136 1 9 1415 863 327 40 61 chr6 108855360 108855836 -40661201 - Lx8 LINE L1 0 7473 7008 9 1415 934 239 25 0 chr6 108855836 108856037 -40661000 - B3 SINE B2 -1 215 10 9 1415 228 119 0 0 chr6 108856038 108856080 -40660957 + L1_Mur2 LINE L1 2857 2898 -2979 9 1415 567 132 0 0 chr6 108856308 108856399 -40660638 + (CAA)n Simple_repeat Simple_repeat 2 92 0 9 1415 21 36 0 0 chr6 108856860 108856888 -40660149 + AT_rich Low_complexity Low_complexity 1 28 0 9 1415 1662 307 94 17 chr6 108857280 108858005 -40659032 - Lx8 LINE L1 -283 7190 6410 9 1415 808 296 108 16 chr6 108858341 108858664 -40658373 + ORR1E LTR MaLR 1 353 -6 9 1415 381 275 0 24 chr6 108858859 108858982 -40658055 + L1MA4 LINE L1 5811 5930 -370 9 1415 319 361 35 6 chr6 108859042 108859238 -40657799 + MIRb SINE MIR 14 220 -42 9 1415 1234 158 113 0 chr6 108859515 108859718 -40657319 + URR1A DNA MER1_type 1 226 0 9 1415 384 371 112 27 chr6 108859871 108860165 -40656872 - MT2A LTR ERVL -115 418 100 9 1415 228 288 40 14 chr6 108860175 108860249 -40656788 - MTC LTR MaLR -340 81 6 9 1415 367 266 81 49 chr6 108860508 108860610 -40656427 - PB1D7 SINE Alu -6 114 8 9 1415 1300 209 116 23 chr6 108860873 108861176 -40655861 - ORR1D2 LTR MaLR 0 370 40 9 1415 211 289 11 78 chr6 108861278 108861358 -40655679 + polypurine Low_complexity Low_complexity 2 77 0 9 1415 234 0 0 0 chr6 108861358 108861384 -40655653 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 9 1415 211 289 11 78 chr6 108861384 108861483 -40655554 + GA-rich Low_complexity Low_complexity 78 169 0 9 1415 621 72 0 0 chr6 108862320 108862403 -40654634 + (TTCC)n Simple_repeat Simple_repeat 1 83 0 9 1415 391 277 154 21 chr6 108863447 108863635 -40653402 + MIR SINE MIR 50 262 0 9 1415 31 26 0 0 chr6 108863636 108863674 -40653363 + AT_rich Low_complexity Low_complexity 1 38 0 9 1415 5981 63 8 4 chr6 108863815 108864545 -40652492 + L1_Mus3 LINE L1 5905 6637 -1 9 1415 1268 115 0 111 chr6 108864645 108864861 -40652176 - B2_Mm2 SINE B2 -3 192 1 9 1415 1080 106 6 56 chr6 108865012 108865192 -40651845 + L1Md_F2 LINE L1 6412 6582 0 9 1415 225 0 0 0 chr6 108865504 108865529 -40651508 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1415 585 0 0 0 chr6 108865671 108865736 -40651301 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 9 1415 493 102 34 11 chr6 108866265 108866354 -40650683 + (TTCCC)n Simple_repeat Simple_repeat 1 91 0 9 1415 339 246 0 0 chr6 108866354 108866415 -40650622 + C-rich Low_complexity Low_complexity 1 61 0 9 1415 794 188 0 50 chr6 108866417 108866557 -40650480 - B1_Mur3 SINE Alu -16 133 1 9 1415 1244 48 0 13 chr6 108866586 108866735 -40650302 + B1_Mus2 SINE Alu 1 147 0 9 1415 231 204 0 0 chr6 108866979 108867028 -40650009 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1415 540 135 18 9 chr6 108867965 108868077 -40648960 + (TATG)n Simple_repeat Simple_repeat 1 113 0 9 1415 280 326 67 22 chr6 108868089 108868224 -40648813 - MER58C DNA MER1_type -2269 151 11 9 1415 385 306 110 16 chr6 108868372 108868618 -40648419 + LTR37B LTR ERV1 194 462 -6 9 1415 21 0 0 0 chr6 108868809 108868830 -40648207 + AT_rich Low_complexity Low_complexity 1 21 0 9 1415 682 31 21 21 chr6 108868883 108868980 -40648057 + (TTTC)n Simple_repeat Simple_repeat 3 99 0 9 1415 303 179 0 0 chr6 108868976 108869043 -40647994 + CT-rich Low_complexity Low_complexity 3 69 0 9 1415 351 0 0 0 chr6 108869056 108869095 -40647942 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1415 255 163 0 0 chr6 108869100 108869143 -40647894 - RSINE1 SINE B4 -39 126 84 1 1415 438 273 10 10 chr6 108869245 108869345 -40647692 + PB1D10 SINE Alu 10 109 -8 1 1415 281 289 182 45 chr6 108869976 108870461 -40646576 - L1ME2z LINE L1 -16 6146 5590 1 1415 352 291 28 19 chr6 108870495 108870656 -40646381 - L1M3 LINE L1 -2495 5500 5334 1 1415 367 264 0 0 chr6 108870718 108870790 -40646247 - ID2 SINE ID -10 73 2 1 1415 401 330 31 10 chr6 108871116 108871312 -40645725 - L1ME2z LINE L1 -1489 4657 4458 1 1415 24 0 0 0 chr6 108871517 108871541 -40645496 + AT_rich Low_complexity Low_complexity 1 24 0 1 1415 1042 148 11 33 chr6 108871670 108871851 -40645186 - Lx4A LINE L1 -1 7057 6881 1 1415 2062 153 99 43 chr6 108871851 108872268 -40644769 + Lx4A LINE L1 6041 6491 -567 1 1415 459 0 0 0 chr6 108872268 108872319 -40644718 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1415 2062 153 99 43 chr6 108872319 108872345 -40644692 + Lx4A LINE L1 6492 6509 -549 1 1415 639 317 90 124 chr6 108872532 108872975 -40644062 + MLT1E2 LTR MaLR 1 428 -196 1 1415 641 241 83 0 chr6 108872994 108873139 -40643898 + RMER15-int LTR ERVL 4234 4390 -609 1 1415 433 242 167 0 chr6 108873139 108873271 -40643766 - Lx7 LINE L1 -685 7011 6858 1 1415 287 294 92 0 chr6 108873419 108873538 -40643499 + Lx8 LINE L1 7223 7352 -121 1 1415 439 322 115 65 chr6 108873647 108874039 -40642998 - MLT1C LTR MaLR -50 417 3 1 1415 560 238 103 0 chr6 108874089 108874215 -40642822 - B1F1 SINE Alu -7 142 4 1 1415 555 66 0 0 chr6 108874409 108874485 -40642552 + (TCC)n Simple_repeat Simple_repeat 3 78 0 1 1415 345 177 65 0 chr6 108874523 108874585 -40642452 - MTEa LTR MaLR -313 66 1 1 1415 228 200 0 0 chr6 108874604 108874654 -40642383 + GA-rich Low_complexity Low_complexity 3 52 0 1 1415 212 322 132 60 chr6 108875539 108875721 -40641316 - MIRc SINE MIR -22 246 52 1 1415 1193 217 83 25 chr6 108877094 108877504 -40639533 + L1_Mur2 LINE L1 877 1252 -6460 1 1415 773 132 19 13 chr6 108878047 108878201 -40638836 + C-rich Low_complexity Low_complexity 3 157 0 1 1415 213 254 68 27 chr6 108878658 108878731 -40638306 - L2c LINE L2 -1 3386 3311 1 1415 318 50 0 0 chr6 108878849 108878889 -40638148 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 1 1415 1400 245 124 39 chr6 108879335 108879819 -40637218 - Lx8 LINE L1 -6 7467 6943 1 1415 189 312 15 67 chr6 108879985 108880119 -40636918 + L2a LINE L2 3222 3348 -78 1 1415 388 167 40 13 chr6 108880186 108880338 -40636699 + (CAGAGA)n Simple_repeat Simple_repeat 1 156 0 1 1415 3211 59 12 5 chr6 108880513 108880940 -40636097 - L1_Mm LINE L1 -2489 3394 2965 1 1415 24877 61 1 61 chr6 108880936 108885286 -40631751 - L1Md_F2 LINE L1 0 6582 2516 1 1415 17323 60 5 0 chr6 108885280 108887456 -40629581 + L1Md_F2 LINE L1 3400 5585 -298 1 1415 8359 60 1 3 chr6 108887457 108888452 -40628585 + L1Md_F2 LINE L1 5587 6579 -3 1 1415 261 0 0 0 chr6 108889124 108889153 -40627884 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1415 22 0 0 0 chr6 108889240 108889262 -40627775 + AT_rich Low_complexity Low_complexity 1 22 0 1 1415 4397 110 34 3 chr6 108889262 108889883 -40627154 - Lx4A LINE L1 -2 7056 6417 1 1415 509 205 59 8 chr6 108889883 108890001 -40627036 - Lx8 LINE L1 -340 7133 7010 1 1415 790 241 144 10 chr6 108890007 108890208 -40626829 - B4A SINE B4 -64 228 1 1 1415 650 213 107 0 chr6 108890772 108890894 -40626143 - B1_Mur2 SINE Alu -13 136 2 1 1415 388 322 31 0 chr6 108890902 108891012 -40626025 - B1F SINE Alu -6 114 2 1 1415 541 249 70 54 chr6 108891013 108891272 -40625765 - L1MA6 LINE L1 -54 6246 5984 1 1415 823 246 36 6 chr6 108891272 108891440 -40625597 - B3 SINE B2 -42 174 2 1 1415 480 297 14 7 chr6 108892264 108892403 -40624634 + B1F SINE Alu 9 148 -1 1 1415 214 322 83 0 chr6 108892930 108893051 -40623986 + MIRc SINE MIR 101 231 -37 1 1415 2267 146 3 0 chr6 108893279 108893607 -40623430 + ORR1A4 LTR MaLR 1 329 0 1 1415 233 29 29 0 chr6 108893809 108893843 -40623194 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1415 343 283 66 16 chr6 108893843 108893965 -40623072 - B1F SINE Alu 0 149 22 1 1415 2416 149 24 8 chr6 108894073 108894445 -40622592 - ORR1C1 LTR MaLR 0 378 1 1 1415 2823 258 27 13 chr6 108894473 108895110 -40621927 - Lx6 LINE L1 -13 7447 6802 1 1415 378 323 89 41 chr6 108895816 108896163 -40620874 - L2a LINE L2 -183 3243 2877 1 1415 183 292 111 67 chr6 108897089 108897269 -40619768 - MIRb SINE MIR 0 268 81 1 1415 500 250 129 0 chr6 108897349 108897481 -40619556 + B1F SINE Alu 1 149 0 1 1415 355 352 57 44 chr6 108897612 108897841 -40619196 + Tigger5 DNA MER2_type 7 238 -2168 1 1415 1746 276 39 25 chr6 108898084 108898722 -40618315 - L1MA6 LINE L1 -304 5996 5350 1 1415 1251 208 81 25 chr6 108899776 108900136 -40616901 + Lx7 LINE L1 5501 5901 -1795 1 1415 700 293 190 67 chr6 108900820 108901241 -40615796 - MER68 LTR ERVL -2 561 89 1 1415 349 268 12 0 chr6 108901333 108901415 -40615622 + B4A SINE B4 1 83 -209 1 1415 417 20 0 0 chr6 108901568 108901618 -40615419 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1415 234 0 0 0 chr6 108901861 108901887 -40615150 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1415 2368 36 3 54 chr6 108902124 108902420 -40614617 - L1Md_F2 LINE L1 0 6582 6302 1 1415 1299 213 5 0 chr6 108903347 108903568 -40613469 - ID_B1 SINE B4 -1 223 2 1 1415 530 277 209 34 chr6 108903878 108904170 -40612867 - ORR1E LTR MaLR -5 354 12 1 1415 421 295 133 87 chr6 108904331 108904595 -40612442 + MLT1B LTR MaLR 23 298 -92 1 1415 5612 168 22 30 chr6 108904603 108905879 -40611158 + L1Md_F LINE L1 99 1205 -5411 1 1415 37334 33 0 1 chr6 108905885 108910302 -40606735 + L1Md_F LINE L1 1170 5586 -297 1 1415 8575 55 0 0 chr6 108910302 108911298 -40605739 + L1Md_T LINE L1 5587 6582 0 1 1415 37334 31 0 1 chr6 108911298 108911324 -40605713 + L1Md_F LINE L1 5587 5610 -273 1 1415 259 291 138 11 chr6 108912028 108912115 -40604922 - Lx8 LINE L1 -237 7236 7139 1 1415 203 267 16 16 chr6 108912444 108912505 -40604532 + MIRc SINE MIR 98 158 -110 1 1415 645 105 0 0 chr6 108912575 108912670 -40604367 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 1 1415 394 253 62 21 chr6 108912767 108912864 -40604173 + B1F SINE Alu 39 139 -10 1 1415 348 304 108 0 chr6 108912957 108913115 -40603922 + MIRc SINE MIR 94 268 0 1 1415 246 156 0 0 chr6 108913544 108913589 -40603448 + CT-rich Low_complexity Low_complexity 4 48 0 1 1415 443 272 88 44 chr6 108914135 108914316 -40602721 + MER5A DNA MER1_type 1 189 0 1 1415 332 375 69 15 chr6 108915282 108915485 -40601552 + MLT1I LTR MaLR 80 293 -118 1 1415 200 176 0 0 chr6 108915870 108915904 -40601133 + C-rich Low_complexity Low_complexity 1 34 0 1 1415 21 36 0 0 chr6 108916427 108916455 -40600582 + AT_rich Low_complexity Low_complexity 1 28 0 1 1415 1516 230 66 9 chr6 108916882 108917216 -40599821 - MTD LTR MaLR 0 419 67 1 1415 300 343 111 33 chr6 108917417 108917598 -40599439 - L2b LINE L2 -181 3194 3000 1 1415 1259 278 95 16 chr6 108917818 108918206 -40598831 - MTD LTR MaLR 0 419 1 1 1415 207 372 176 20 chr6 108918288 108918634 -40598403 - L3 LINE CR1 -335 4154 3755 1 1415 203 342 135 26 chr6 108918942 108919098 -40597939 + MIR SINE MIR 58 230 -32 1 1415 21 36 0 0 chr6 108919119 108919147 -40597890 + AT_rich Low_complexity Low_complexity 1 28 0 1 1415 791 238 27 11 chr6 108919165 108919352 -40597685 - B3A SINE B2 -8 190 1 1 1415 378 0 0 0 chr6 108919393 108919435 -40597602 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1415 458 315 0 33 chr6 108919443 108919594 -40597443 - RSINE1 SINE B4 -18 147 2 1 1415 290 294 0 12 chr6 108919601 108919687 -40597350 - PB1D10 SINE Alu -3 114 30 1 1415 23 0 0 0 chr6 108919716 108919739 -40597298 + AT_rich Low_complexity Low_complexity 1 23 0 1 1415 620 225 123 18 chr6 108919787 108919950 -40597087 - MER74C LTR ERVL -275 185 6 1 1415 289 322 93 0 chr6 108920461 108920579 -40596458 - MLT1G1 LTR MaLR -2 577 449 1 176 512 322 151 21 chr6 108920592 108920871 -40596166 - MLT1G1 LTR MaLR -264 315 1 1 1416 358 369 137 22 chr6 108921123 108921525 -40595512 + MLT1L LTR MaLR 127 574 -36 1 1416 369 287 178 68 chr6 108922240 108922606 -40594431 + MLT1A1 LTR MaLR 1 406 -2 1 1416 1307 35 7 0 chr6 108922826 108922971 -40594066 + B1_Mm SINE Alu 2 147 0 1 1416 270 0 0 0 chr6 108923088 108923118 -40593919 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1416 586 312 6 67 chr6 108923121 108923286 -40593751 - B3A SINE B2 -36 162 8 1 1416 2372 110 0 58 chr6 108924227 108924573 -40592464 + ORR1A3 LTR MaLR 1 326 0 1 1416 757 223 92 102 chr6 108924574 108924628 -40592409 - Lx8 LINE L1 -11 7462 7421 1 1416 240 111 0 0 chr6 108924628 108924664 -40592373 + (CATA)n Simple_repeat Simple_repeat 3 38 0 1 1416 757 223 92 102 chr6 108924664 108924904 -40592133 - Lx8 LINE L1 -53 7420 7171 1 1416 225 297 26 26 chr6 108925072 108925148 -40591889 - MER81 DNA AcHobo -38 76 1 1 1416 214 336 72 9 chr6 108925168 108925279 -40591758 - L2b LINE L2 -2 3373 3256 1 1416 5753 122 27 11 chr6 108925767 108926617 -40590420 + Lx2 LINE L1 6134 6997 0 1 1416 314 396 47 0 chr6 108926835 108926984 -40590053 + LTR16A1 LTR ERVL 1 156 -300 1 1416 813 282 45 74 chr6 108927139 108927491 -40589546 + MLT1B LTR MaLR 14 355 -35 1 1416 493 15 0 29 chr6 108927642 108927710 -40589327 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 1416 270 0 0 0 chr6 108927710 108927740 -40589297 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1416 244 305 0 0 chr6 108927881 108927940 -40589097 - ID_B1 SINE B4 -17 207 149 1 1416 13708 27 11 4 chr6 108927990 108930332 -40586705 - L1Md_T LINE L1 0 6582 4282 1 1416 257 0 30 0 chr6 108930332 108930365 -40586672 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 1 1416 13708 24 17 6 chr6 108930365 108930397 -40586640 - L1Md_T LINE L1 -1602 4281 4257 1 1416 38719 30 18 11 chr6 108930368 108932004 -40585033 - L1Md_T LINE L1 -11 6571 4906 1 1416 232 167 46 77 chr6 108932004 108932069 -40584968 + RMER20A LTR ERVK 186 248 -268 1 1416 38719 30 18 11 chr6 108932069 108936482 -40580555 - L1Md_T LINE L1 -11 4905 409 1 1416 1604 131 5 5 chr6 108936750 108936972 -40580065 + URR1A DNA MER1_type 5 226 0 1 1416 879 249 50 10 chr6 108937658 108937857 -40579180 + B3 SINE B2 10 216 0 1 1416 602 239 198 16 chr6 108938539 108938726 -40578311 - B4 SINE B4 -8 284 64 1 1416 1343 261 38 32 chr6 108938766 108939111 -40577926 + MTD LTR MaLR 7 353 -66 1 1416 355 280 10 39 chr6 108939120 108939224 -40577813 + MTD LTR MaLR 315 415 -4 1 1416 341 213 0 0 chr6 108939230 108939291 -40577746 - B4 SINE B4 -227 65 5 1 1416 207 0 0 0 chr6 108940305 108940328 -40576709 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1 1416 3839 65 9 0 chr6 108940353 108940813 -40576224 + L1_Mus1 LINE L1 6104 6567 0 1 1416 650 315 87 31 chr6 108941168 108941456 -40575581 - Lx5 LINE L1 -160 6890 6587 1 1416 369 208 65 9 chr6 108941474 108941581 -40575456 + Lx6 LINE L1 6013 6125 -1335 1 1416 1386 326 78 16 chr6 108942179 108942817 -40574220 - Lx8 LINE L1 -157 7316 6639 1 1416 338 260 13 0 chr6 108942953 108943030 -40574007 - ID4_ SINE ID -4 79 2 1 1416 611 263 206 70 chr6 108943045 108943582 -40573455 + RLTR18 LTR ERVK 1 611 -5 1 1416 229 259 23 80 chr6 108943591 108943679 -40573358 + L1MB2 LINE L1 6005 6087 -84 1 1416 257 322 26 73 chr6 108943965 108944156 -40572881 - L2a LINE L2 -319 3107 2926 1 1416 282 182 0 0 chr6 108944394 108944438 -40572599 + G-rich Low_complexity Low_complexity 1 44 0 1 1416 873 122 11 17 chr6 108944442 108944617 -40572420 + GA-rich Low_complexity Low_complexity 1 174 0 1 1416 1025 153 7 4 chr6 108944989 108946036 -40571001 + (CATA)n Simple_repeat Simple_repeat 1 1050 0 1 1416 977 238 34 5 chr6 108947121 108947328 -40569709 + B3 SINE B2 4 216 0 1 1416 363 96 0 0 chr6 108947536 108947588 -40569449 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1416 225 196 0 0 chr6 108947588 108947634 -40569403 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1 1416 3114 84 5 5 chr6 108947634 108948039 -40568998 + L1_Mus3 LINE L1 6233 6637 -1 1 1416 440 284 56 37 chr6 108949074 108949235 -40567802 - RSINE1 SINE B4 0 165 2 1 1416 459 291 16 2 chr6 108949881 108950009 -40567028 + MIRb SINE MIR 15 148 -120 1 1416 1568 161 30 36 chr6 108950019 108950322 -40566715 + Lx4A LINE L1 6729 7029 -29 1 1416 261 270 42 34 chr6 108950625 108950744 -40566293 + MER5A1 DNA MER1_type 41 160 -6 1 1416 1187 84 0 8 chr6 108951152 108951753 -40565284 + (GGA)n Simple_repeat Simple_repeat 1 596 0 1 1416 693 82 0 0 chr6 108952525 108952622 -40564415 + (TC)n Simple_repeat Simple_repeat 2 98 0 1 1416 687 236 105 71 chr6 108952647 108952911 -40564126 - B4 SINE B4 -11 281 42 1 1416 646 259 65 30 chr6 108953080 108953311 -40563726 + LTR16B2 LTR ERVL 223 461 -1 1 1416 2576 134 38 36 chr6 108953349 108953768 -40563269 + MTC LTR MaLR 1 420 -1 1 1416 288 210 0 0 chr6 108955127 108955208 -40561829 + GA-rich Low_complexity Low_complexity 3 83 0 1 1416 288 0 0 0 chr6 108956465 108956497 -40560540 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1416 246 95 0 0 chr6 108956498 108956540 -40560497 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1416 355 256 35 0 chr6 108956577 108956663 -40560374 - MLT2D LTR ERVL -63 497 409 1 1416 460 223 9 37 chr6 108956755 108956862 -40560175 + B1F SINE Alu 42 145 -4 1 1416 459 0 0 0 chr6 108956892 108956943 -40560094 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1416 367 350 12 31 chr6 108956967 108957129 -40559908 - MLT2B4 LTR ERVL -378 178 20 1 1416 876 319 77 32 chr6 108957216 108957682 -40559355 - MER74A LTR ERVL 0 558 72 1 1416 187 348 33 0 chr6 108957944 108958036 -40559001 + MIRc SINE MIR 160 254 -14 1 1416 7031 55 0 8 chr6 108960287 108960537 -40556500 - L1_Mm LINE L1 -182 5701 5457 1 1416 4594 45 6 0 chr6 108960537 108961068 -40555969 - L1Md_F3 LINE L1 0 6584 6051 1 1416 7031 55 0 8 chr6 108961068 108961689 -40555348 - L1_Mm LINE L1 -427 5456 4837 1 1416 7626 37 0 6 chr6 108961689 108962553 -40554484 + L1Md_F2 LINE L1 5724 6582 0 1 1416 41987 5 1 0 chr6 108963118 108969488 -40547549 - L1Md_A LINE L1 0 6582 208 1 1416 346 273 101 25 chr6 108970568 108970726 -40546311 + MIRb SINE MIR 98 267 -1 1 1416 474 322 63 23 chr6 108970930 108971105 -40545932 - MER58A DNA MER1_type -42 182 1 1 1416 25 0 0 0 chr6 108971160 108971185 -40545852 + AT_rich Low_complexity Low_complexity 1 25 0 1 1416 1036 295 16 8 chr6 108971379 108971725 -40545312 - Lx7 LINE L1 -1792 5904 5586 1 1416 298 330 66 78 chr6 108971733 108971976 -40545061 - MIR SINE MIR -21 241 2 1 1416 201 345 44 11 chr6 108972411 108972502 -40544535 - MIRb SINE MIR -149 119 26 1 1416 262 244 61 0 chr6 108972957 108973039 -40543998 + Lx9 LINE L1 7384 7470 -174 1 1416 1632 225 161 3 chr6 108973359 108973720 -40543317 - MTD LTR MaLR 0 419 2 1 1416 295 326 87 49 chr6 108973723 108973907 -40543130 + MLT1C LTR MaLR 72 262 -205 1 1416 5914 101 19 31 chr6 108974570 108975241 -40541796 - MusHAL1 LINE L1 -904 1808 1159 1 1416 342 0 0 0 chr6 108975241 108975279 -40541758 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1416 5914 101 19 31 chr6 108975279 108975539 -40541498 - MusHAL1 LINE L1 -1554 1158 890 1 1416 5559 57 1 26 chr6 108975539 108976904 -40540133 + L1Md_A LINE L1 597 1918 -3965 1 1416 8483 20 0 0 chr6 108976906 108977869 -40539168 + L1Md_T LINE L1 4623 5585 -298 1 1416 8949 35 1 0 chr6 108977870 108978864 -40538173 + L1Md_T LINE L1 5587 6581 -1 1 1416 4916 99 18 10 chr6 108978864 108979649 -40537388 - MusHAL1 LINE L1 -1810 902 112 1 1416 765 179 0 52 chr6 108979631 108979784 -40537253 - L1VL2 LINE L1 -5897 438 294 1 1416 535 285 88 83 chr6 108979875 108980389 -40536648 - L1MA6 LINE L1 -17 6280 5742 1 1416 1055 268 157 10 chr6 108980502 108980815 -40536222 - ORR1D2 LTR MaLR 0 370 12 1 1416 195 146 18 35 chr6 108980943 108981000 -40536037 + GA-rich Low_complexity Low_complexity 3 58 0 1 1416 307 361 46 12 chr6 108981001 108981174 -40535863 + MIRc SINE MIR 12 193 -75 1 1416 1433 245 68 16 chr6 108981223 108981604 -40535433 - MTD LTR MaLR -14 405 5 1 1416 249 33 0 0 chr6 108982453 108982483 -40534554 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1416 254 422 0 29 chr6 108982607 108982712 -40534325 - L2b LINE L2 -20 3355 3254 1 1416 535 262 61 24 chr6 108982726 108982890 -40534147 + MER5A DNA MER1_type 14 183 -6 1 1416 660 266 81 3 chr6 108982927 108983120 -40533917 + ID_B1 SINE B4 19 227 -65 1 1416 387 0 0 0 chr6 108983564 108983607 -40533430 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1416 8883 91 3 1 chr6 108984303 108986204 -40530833 + L1_Mus1 LINE L1 4659 6565 -2 1 1416 2978 307 33 35 chr6 108986250 108987023 -40530014 + Lx9 LINE L1 6281 7196 -448 1 1416 1353 222 56 122 chr6 108987023 108987434 -40529603 + ORR1C2 LTR MaLR 1 384 0 1 1416 2978 314 36 35 chr6 108987434 108987842 -40529195 + Lx9 LINE L1 7065 7473 0 1 1416 421 277 7 55 chr6 108988816 108988961 -40528076 - RMER15 LTR ERVL -14 561 424 1 1416 292 165 0 52 chr6 108989390 108989486 -40527551 + CT-rich Low_complexity Low_complexity 3 93 0 1 1416 1001 313 88 3 chr6 108989801 108990189 -40526848 - RMER15-int LTR ERVL -412 4587 4167 1 1416 253 227 160 0 chr6 108990244 108990319 -40526718 - RMER15-int LTR ERVL -2618 2381 2295 1 1416 344 339 39 39 chr6 108990339 108990520 -40526517 - RMER15-int LTR ERVL -2795 2204 2024 1 1416 35059 74 5 3 chr6 108991112 108997325 -40519712 - L1Md_F2 LINE L1 -2 6583 262 1 1416 294 276 71 0 chr6 108997330 108997428 -40519609 - RMER15-int LTR ERVL -3385 1614 1510 1 1416 216 0 0 0 chr6 108997494 108997518 -40519519 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1416 419 0 0 19 chr6 108997775 108997827 -40519210 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1416 1941 327 55 39 chr6 108997843 108999249 -40517788 - L1_Mur3 LINE L1 -12 5868 4440 1 1416 2103 100 77 3 chr6 108999339 108999651 -40517386 - L1_Mus4 LINE L1 -4 6632 6298 1 1416 250 319 24 89 chr6 109001050 109001174 -40515863 - RMER15-int LTR ERVL -4713 286 171 1 1416 1526 252 42 19 chr6 109001198 109001558 -40515479 - ORR1D2 LTR MaLR -2 368 1 2 1416 414 57 0 0 chr6 109001661 109001714 -40515323 + (TATG)n Simple_repeat Simple_repeat 3 55 0 3 1416 1392 110 41 9 chr6 109002247 109002468 -40514569 - ORR1A2 LTR MaLR -51 276 49 4 1416 1629 184 43 15 chr6 109002528 109002854 -40514183 - RMER6B LTR ERVK 0 461 127 5 1416 813 80 0 0 chr6 109002854 109002979 -40514058 - MusHAL1 LINE L1 -1355 1357 1233 6 1416 7966 29 0 0 chr6 109002999 109003975 -40513062 - L1Md_T LINE L1 -1 6581 5606 7 1416 543 149 0 0 chr6 109003975 109004062 -40512975 - L1Md_F LINE L1 -3435 2448 2362 8 1416 525 243 34 48 chr6 109004059 109004283 -40512754 - L1Md_F LINE L1 -5795 821 668 8 1416 2338 244 57 51 chr6 109004308 109005011 -40512026 + Lx6 LINE L1 6747 7453 -7 9 1416 213 39 0 0 chr6 109005174 109005200 -40511837 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1416 594 0 0 0 chr6 109005204 109005270 -40511767 + (TA)n Simple_repeat Simple_repeat 2 67 0 1 1416 306 196 0 0 chr6 109005279 109005330 -40511707 - B4 SINE B4 -224 68 18 1 1416 182 333 100 0 chr6 109005334 109005394 -40511643 - MIR SINE MIR -96 112 47 1 1416 600 53 0 0 chr6 109006073 109006149 -40510888 + (TCTCCC)n Simple_repeat Simple_repeat 3 78 0 1 1416 2751 225 66 10 chr6 109006153 109006777 -40510260 - Lx5 LINE L1 -5 7045 6387 1 1416 1034 311 66 13 chr6 109007078 109007456 -40509581 + MLT1A1 LTR MaLR 6 403 -5 1 1416 31854 81 3 6 chr6 109008203 109014414 -40502623 - L1Md_F2 LINE L1 -12 6570 380 1 1416 254 250 0 0 chr6 109014457 109014513 -40502524 + MIR SINE MIR 70 125 -137 1 1416 250 309 236 0 chr6 109014627 109014737 -40502300 - B1F SINE Alu 0 149 14 1 1416 423 0 0 0 chr6 109014749 109014796 -40502241 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1416 238 284 23 58 chr6 109014819 109014905 -40502132 - RSINE1 SINE B4 0 165 83 2 1416 289 311 18 63 chr6 109015019 109015154 -40501883 - RSINE1 SINE B4 -169 123 4 2 1416 243 245 66 38 chr6 109015585 109015691 -40501346 + L1PB4 LINE L1 5850 5958 -198 2 1416 22 35 0 0 chr6 109015910 109015939 -40501098 + AT_rich Low_complexity Low_complexity 1 29 0 2 1416 394 88 14 14 chr6 109016074 109016143 -40500894 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 2 1416 1622 157 64 38 chr6 109016601 109016945 -40500092 - RMER1B Other Other -1 1065 713 2 1416 33583 52 2 3 chr6 109017019 109022561 -40494476 + L1Md_T LINE L1 124 5589 -297 2 1416 8347 34 3 0 chr6 109022561 109023554 -40493483 + L1Md_T LINE L1 5590 6585 0 2 1416 2498 268 71 22 chr6 109023579 109024484 -40492553 - Lx5 LINE L1 -43 7417 6276 2 1416 2012 145 101 8 chr6 109024489 109024886 -40492151 - L1_Mur2 LINE L1 -161 5716 5283 2 1416 6392 78 1 1 chr6 109024927 109025767 -40491270 - L1Md_F2 LINE L1 -2 6580 5741 3 1416 32133 66 2 5 chr6 109025774 109028055 -40488982 - L1Md_F3 LINE L1 -2 6582 4308 3 1416 243 0 0 0 chr6 109028055 109028082 -40488955 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1416 32133 102 4 13 chr6 109028082 109032069 -40484968 - L1Md_F3 LINE L1 -1576 4307 443 3 1416 361 267 35 0 chr6 109032439 109032525 -40484512 + B3A SINE B2 1 89 -109 3 1416 434 274 48 111 chr6 109032950 109033065 -40483972 - L1MA9 LINE L1 -389 5923 5797 3 1416 324 0 0 0 chr6 109033065 109033101 -40483936 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1416 434 274 48 111 chr6 109033101 109033270 -40483767 - L1MA9 LINE L1 -516 5796 5639 3 1416 411 338 88 0 chr6 109033270 109033418 -40483619 - RSINE1 SINE B4 0 165 5 3 1416 434 187 154 76 chr6 109033418 109033542 -40483495 - L1MA9 LINE L1 -674 5638 5515 3 1416 200 369 30 8 chr6 109033560 109033694 -40483343 + MIRb SINE MIR 122 258 -10 3 1416 4743 185 99 36 chr6 109034862 109035871 -40481166 - RLTR22_Mur LTR ERVK -617 1231 184 3 1416 426 20 0 0 chr6 109035871 109035922 -40481115 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1416 4743 185 99 36 chr6 109035922 109036070 -40480967 - RLTR22_Mur LTR ERVK -1665 183 3 3 1416 236 269 15 15 chr6 109036748 109036816 -40480221 - MTEb LTR MaLR -19 360 293 4 1416 594 253 64 25 chr6 109037536 109037771 -40479266 + L1_Rod LINE L1 726 969 -6639 4 1416 400 57 0 0 chr6 109037773 109037826 -40479211 - L1Md_F2 LINE L1 -232 6350 6298 4 1416 1415 100 42 9 chr6 109037827 109038039 -40478998 + L1Md_F2 LINE L1 6355 6573 -9 4 1416 419 99 49 0 chr6 109038056 109038137 -40478900 + Lx3_Mus LINE L1 6917 7001 -8 4 1416 1978 37 0 0 chr6 109038206 109038446 -40478591 + L1_Mm LINE L1 5347 5586 -297 4 1416 8158 43 5 0 chr6 109038446 109039436 -40477601 + L1Md_F2 LINE L1 5587 6581 -1 4 1416 1352 230 44 10 chr6 109039449 109039858 -40477179 + L1_Rod LINE L1 1419 1841 -4006 4 1416 3172 245 28 23 chr6 109039884 109040913 -40476124 + L1_Rod LINE L1 2535 3568 -2279 4 1416 7111 71 9 19 chr6 109040910 109042444 -40474593 - L1Md_F2 LINE L1 0 6582 5069 4 1416 36894 39 1 1 chr6 109043189 109049113 -40467924 - L1Md_A LINE L1 0 6585 563 4 1416 430 139 0 0 chr6 109049106 109049178 -40467859 - L1Md_A LINE L1 -6282 337 266 4 2 25865 83 2 1 chr6 109049211 109052992 -40464045 - L1Md_F2 LINE L1 -801 5082 1297 4 1417 998 156 0 16 chr6 109052966 109053149 -40463888 - L1Md_F2 LINE L1 -6136 480 301 4 1417 378 200 84 40 chr6 109053218 109053375 -40463662 + L1_Rod LINE L1 3627 3790 -2057 4 1417 395 264 0 0 chr6 109053371 109053458 -40463579 - RMER1A Other Other -884 146 60 4 1417 2149 229 39 45 chr6 109053463 109054182 -40462855 + L1_Rod LINE L1 4282 4996 -851 4 1417 773 305 76 45 chr6 109054202 109054532 -40462505 + MTD LTR MaLR 51 390 -29 4 1417 482 218 282 21 chr6 109054834 109054995 -40462042 - L1MC3 LINE L1 -29 7756 7588 5 1417 1104 133 0 0 chr6 109054995 109055175 -40461862 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1417 583 291 192 20 chr6 109055175 109055552 -40461485 - L1MC3 LINE L1 -198 7587 7112 5 1417 327 25 0 0 chr6 109055937 109055977 -40461060 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1417 493 269 150 12 chr6 109056899 109057072 -40459965 - B3A SINE B2 0 198 2 5 1417 1397 212 115 30 chr6 109057315 109057753 -40459284 + RLTR20C LTR ERVK 5 469 -94 5 1417 1016 115 12 41 chr6 109057841 109057861 -40459176 - L1_Mus3 LINE L1 -1 6637 6618 5 1417 1106 100 4 218 chr6 109057861 109058104 -40458933 - B2_Mm1t SINE B2 0 193 3 5 1417 1016 115 12 41 chr6 109058104 109058255 -40458782 - L1_Mus3 LINE L1 -21 6617 6471 5 1417 327 241 56 33 chr6 109058256 109058346 -40458691 + RLTR20C LTR ERVK 435 526 -8 5 1417 208 121 30 0 chr6 109058896 109058929 -40458108 - MIRm SINE MIR -130 146 113 5 1417 314 329 57 19 chr6 109058971 109059115 -40457922 - MER3 DNA MER1_type 0 209 60 5 1417 764 236 0 7 chr6 109059115 109059264 -40457773 + B3A SINE B2 1 148 -50 5 1417 399 21 0 0 chr6 109059285 109059333 -40457704 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1417 310 288 47 41 chr6 109059462 109059633 -40457404 + L1_Mur3 LINE L1 5250 5455 -729 6 1417 1742 243 59 9 chr6 109059608 109060049 -40456988 - Lx6 LINE L1 -15 7445 6983 6 1417 862 302 62 58 chr6 109060041 109060140 -40456897 + Lx8 LINE L1 5343 5435 -412 6 1417 228 135 0 0 chr6 109060140 109060177 -40456860 + (CAG)n Simple_repeat Simple_repeat 2 38 0 6 1417 862 304 62 53 chr6 109060177 109060622 -40456415 + Lx8 LINE L1 5436 5928 -1545 6 1417 1896 216 13 19 chr6 109060649 109061021 -40456016 - ORR1D2 LTR MaLR 0 370 1 6 1417 338 339 101 0 chr6 109061941 109062109 -40454928 - B4A SINE B4 -6 286 102 6 1417 276 53 0 0 chr6 109062284 109062322 -40454715 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 6 1417 402 267 0 11 chr6 109062794 109062885 -40454152 + MER44D DNA MER2_type 20 109 -596 6 1417 658 204 87 7 chr6 109062886 109063024 -40454013 - B1_Mur2 SINE Alu 0 149 1 6 1417 259 346 0 0 chr6 109063024 109063105 -40453932 - B4 SINE B4 -207 85 5 6 1417 240 263 53 0 chr6 109063109 109063185 -40453852 + MER44D DNA MER2_type 503 582 -123 6 1417 1132 206 0 0 chr6 109063204 109063403 -40453634 - B3 SINE B2 -10 206 8 7 1417 257 227 0 107 chr6 109063530 109063614 -40453423 + MER44D DNA MER2_type 582 656 -49 6 1417 241 313 152 61 chr6 109063856 109064186 -40452851 - MLT1A1 LTR MaLR -46 362 3 7 1417 464 240 143 8 chr6 109064401 109064527 -40452510 + B1F SINE Alu 7 149 0 7 1417 704 302 34 0 chr6 109064774 109064953 -40452084 - B3 SINE B2 -9 207 23 7 1417 267 292 9 54 chr6 109064992 109065024 -40452013 + MIR SINE MIR 143 168 -94 7 1417 502 264 174 41 chr6 109065024 109065368 -40451669 - MLT1B LTR MaLR 0 390 1 7 1417 267 292 9 54 chr6 109065368 109065447 -40451590 + MIR SINE MIR 169 248 -14 7 1417 282 284 0 29 chr6 109065456 109065525 -40451512 - L2a LINE L2 -18 3408 3342 7 1417 235 236 86 104 chr6 109065724 109065851 -40451186 - MLT1A1 LTR MaLR -239 126 3 7 1417 411 338 27 81 chr6 109067157 109067279 -40449758 - MIRb SINE MIR 0 268 148 7 1417 4917 60 3 12 chr6 109067279 109067871 -40449166 - L1Md_F2 LINE L1 0 6582 5996 7 1417 411 338 27 81 chr6 109067871 109067970 -40449067 - MIRb SINE MIR -121 147 59 7 1417 269 116 26 85 chr6 109068810 109068909 -40448128 + A-rich Low_complexity Low_complexity 3 101 0 8 1417 357 24 0 0 chr6 109068909 109068951 -40448086 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 8 1417 269 116 26 85 chr6 109068951 109069040 -40447997 + A-rich Low_complexity Low_complexity 102 180 0 8 1417 718 286 15 5 chr6 109069432 109069629 -40447408 + B3 SINE B2 1 199 -17 8 1417 1149 183 64 5 chr6 109070054 109070257 -40446780 - B3 SINE B2 0 216 2 8 1417 387 340 10 0 chr6 109071478 109071578 -40445459 + B3A SINE B2 47 147 -51 8 1417 244 360 63 11 chr6 109071588 109071779 -40445258 + L1M2 LINE L1 2427 2627 -4222 8 1417 234 62 0 0 chr6 109072105 109072137 -40444900 + (TC)n Simple_repeat Simple_repeat 1 32 0 8 1417 504 0 0 0 chr6 109072138 109072194 -40444843 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1417 895 254 46 89 chr6 109072273 109072576 -40444461 + B4 SINE B4 1 290 -2 8 1417 226 258 117 11 chr6 109072619 109072713 -40444324 + L1M2 LINE L1 2968 3071 -3774 8 1417 579 312 12 0 chr6 109072776 109072936 -40444101 + RSINE1 SINE B4 4 165 0 9 1417 870 293 155 52 chr6 109073172 109073972 -40443065 + L1M2 LINE L1 3914 4798 -2047 8 1417 192 111 0 0 chr6 109073972 109074008 -40443029 + (T)n Simple_repeat Simple_repeat 1 36 0 9 1417 1239 55 7 7 chr6 109074010 109074157 -40442880 - B1_Mus2 SINE Alu 0 147 1 9 1417 319 237 127 60 chr6 109074159 109074325 -40442712 + L1_Mur3 LINE L1 4056 4232 -1648 9 1417 502 191 21 0 chr6 109074506 109074600 -40442437 - RLTR14-int LTR ERV1 -4400 917 822 9 1417 485 286 70 50 chr6 109075209 109075467 -40441570 - RLTR14-int LTR ERV1 -4900 417 155 9 1417 264 297 76 67 chr6 109076531 109076650 -40440387 - RLTR14-int LTR ERV1 -5196 121 2 9 1417 986 262 30 77 chr6 109076650 109077051 -40439986 - RLTR14 LTR ERV1 0 382 1 9 1417 2364 261 72 37 chr6 109077114 109078081 -40438956 + L1M2 LINE L1 4987 5987 -858 8 1417 203 306 9 9 chr6 109078088 109078197 -40438840 + (CA)n Simple_repeat Simple_repeat 1 109 0 9 1417 4828 52 9 2 chr6 109078243 109078816 -40438221 - L1Md_F2 LINE L1 -1 6581 6005 9 1417 34673 4 0 0 chr6 109078816 109083348 -40433689 - L1Md_A LINE L1 0 6582 2053 9 1417 606 29 0 0 chr6 109083341 109083411 -40433626 - L1Md_F2 LINE L1 -563 6019 5950 9 1417 8429 74 3 34 chr6 109083410 109084215 -40432822 - L1_Mm LINE L1 -678 5205 4426 9 1417 5594 41 2 0 chr6 109084215 109084845 -40432192 - L1Md_T LINE L1 -2 6580 5950 9 1417 8429 74 3 34 chr6 109084845 109085205 -40431832 - L1_Mm LINE L1 -1458 4425 4076 9 1417 239 359 0 19 chr6 109085235 109085397 -40431640 + (CA)n Simple_repeat Simple_repeat 2 160 0 1 1417 6007 58 1 8 chr6 109085693 109086638 -40430399 - L1Md_F3 LINE L1 -899 6077 5148 1 1417 4288 37 6 4 chr6 109086638 109087123 -40429914 + L1Md_F3 LINE L1 6085 6570 -14 1 1417 325 325 44 0 chr6 109087390 109087504 -40429533 + MLT1A1 LTR MaLR 20 138 -270 1 1417 25 31 0 0 chr6 109087652 109087684 -40429353 + AT_rich Low_complexity Low_complexity 1 32 0 1 1417 1279 262 84 23 chr6 109087698 109088089 -40428948 - MTD LTR MaLR 0 419 5 1 1417 313 348 83 19 chr6 109088202 109088407 -40428630 + MIRb SINE MIR 3 220 -48 1 1417 345 346 93 0 chr6 109089529 109089691 -40427346 - L2a LINE L2 0 3426 3250 1 1417 1275 61 0 0 chr6 109089715 109089863 -40427174 - B1_Mus1 SINE Alu 0 148 1 1 1417 285 333 22 22 chr6 109089922 109090011 -40427026 + MLT1H2 LTR MaLR 68 156 -333 1 1417 3156 204 156 6 chr6 109090023 109090123 -40426914 - RMER1B Other Other 0 1066 920 1 1417 351 0 0 0 chr6 109090123 109090162 -40426875 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1417 3156 207 153 8 chr6 109090162 109090807 -40426230 - RMER1B Other Other -147 919 270 1 1417 742 267 6 0 chr6 109091260 109091432 -40425605 - RMER1B Other Other -890 176 4 1 1417 2094 223 10 2 chr6 109091716 109092112 -40424925 + Lx6 LINE L1 6955 7353 -107 1 1417 272 294 12 12 chr6 109092758 109092844 -40424193 + PB1D10 SINE Alu 1 86 -31 1 1417 840 296 76 36 chr6 109092846 109093176 -40423861 - ORR1E LTR MaLR -6 353 11 1 1417 253 284 108 0 chr6 109093211 109093285 -40423752 + ID4_ SINE ID 1 82 -1 1 1417 210 191 0 0 chr6 109093702 109093744 -40423293 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1417 289 313 76 46 chr6 109093917 109094216 -40422821 - MTEb LTR MaLR -14 365 20 1 1417 1217 216 4 54 chr6 109094466 109094745 -40422292 - RMER1C Other Other -1049 293 29 1 1417 708 12 0 0 chr6 109094799 109094880 -40422157 + (TC)n Simple_repeat Simple_repeat 1 81 0 1 1417 507 167 24 0 chr6 109095352 109095436 -40421601 + B3 SINE B2 1 86 -130 1 1417 300 264 72 62 chr6 109095436 109095449 -40421588 + RSINE1 SINE B4 2 99 -66 1 1417 285 347 0 0 chr6 109096513 109096588 -40420449 - ID4_ SINE ID -5 78 4 1 1417 393 218 35 52 chr6 109097393 109097509 -40419528 - MLT1A1 LTR MaLR -6 402 289 1 1417 762 257 136 75 chr6 109097567 109097912 -40419125 - MTE2a LTR MaLR -4 375 10 1 1417 350 295 31 10 chr6 109098019 109098115 -40418922 + PB1D10 SINE Alu 3 100 -17 1 1417 2640 197 59 94 chr6 109098174 109098960 -40418077 - RMER13B LTR ERVK -1 859 5 1 1417 230 377 91 4 chr6 109098975 109099152 -40417885 - MIR SINE MIR -30 238 41 1 1417 682 244 107 20 chr6 109099153 109099350 -40417687 - B3 SINE B2 0 216 3 1 1417 186 208 0 0 chr6 109099779 109099827 -40417210 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1417 248 317 98 24 chr6 109099898 109100021 -40417016 - LTR50 LTR ERVL -640 155 24 1 1417 513 0 0 0 chr6 109100213 109100270 -40416767 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1417 192 217 0 0 chr6 109100270 109100316 -40416721 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1417 196 298 0 34 chr6 109101313 109101372 -40415665 - MIRb SINE MIR -19 249 193 1 1417 480 35 0 0 chr6 109101544 109101602 -40415435 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1417 4941 107 54 32 chr6 109101603 109102349 -40414688 - Lx LINE L1 -13 6641 5880 1 1417 430 335 83 5 chr6 109102351 109102555 -40414482 + MIRb SINE MIR 41 260 -8 1 1417 445 350 145 39 chr6 109102999 109103406 -40413631 + LTR16A1 LTR ERVL 3 452 -4 1 1417 378 107 0 0 chr6 109104581 109104637 -40412400 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1417 390 235 175 0 chr6 109104654 109104837 -40412200 + Lx9 LINE L1 7426 7640 -4 1 1417 296 326 48 63 chr6 109105656 109105716 -40411321 + MLT2B2 LTR ERVL 3 55 -501 1 1417 609 27 0 0 chr6 109105716 109105791 -40411246 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1417 448 323 101 51 chr6 109105791 109106121 -40410916 + MLT2B2 LTR ERVL 56 453 -62 1 1417 221 188 0 20 chr6 109106125 109106174 -40410863 + (TATG)n Simple_repeat Simple_repeat 2 49 0 1 1417 662 225 41 20 chr6 109106227 109106472 -40410565 + RMER17C LTR ERVK 1 250 -160 1 1417 1288 187 18 42 chr6 109106449 109106784 -40410253 + RMER17C LTR ERVK 84 410 0 1 1417 187 122 20 20 chr6 109106788 109106838 -40410199 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1 1417 231 386 45 0 chr6 109107185 109107317 -40409720 + LTR16C LTR ERVL 3 140 -349 1 1417 1089 273 54 25 chr6 109107595 109107873 -40409164 - B4 SINE B4 0 292 7 1 1417 523 268 0 0 chr6 109107889 109108001 -40409036 + B1F SINE Alu 17 128 -21 1 1417 3589 82 2 4 chr6 109108108 109108561 -40408476 + L1_Mus1 LINE L1 6116 6567 0 1 1417 213 319 21 21 chr6 109108597 109108693 -40408344 - MIRb SINE MIR -22 246 151 1 1417 4637 176 41 63 chr6 109108957 109109990 -40407047 + RMER19B LTR ERVK 1 902 0 1 1417 505 310 53 11 chr6 109109990 109110216 -40406821 - ORR1E LTR MaLR -142 242 1 1 1417 303 221 340 20 chr6 109110734 109110880 -40406157 - MER58A DNA MER1_type -1 223 31 1 1417 301 354 51 17 chr6 109110880 109111058 -40405979 - L2 LINE L2 -612 2807 2624 1 1417 698 255 15 56 chr6 109111525 109111720 -40405317 - B3A SINE B2 -10 188 2 1 1417 22 0 0 0 chr6 109113212 109113234 -40403803 + AT_rich Low_complexity Low_complexity 1 22 0 1 1417 1893 130 43 0 chr6 109113239 109113538 -40403499 - Lx3C LINE L1 -7 6969 6658 1 1417 487 198 9 28 chr6 109113540 109113657 -40403380 - B1_Mur1 SINE Alu -13 136 1 1 1417 1081 67 13 0 chr6 109115298 109115447 -40401590 - L1Md_A LINE L1 0 6582 6432 1 1417 634 305 98 75 chr6 109115653 109115864 -40401173 + L1MC4a LINE L1 6871 7077 -805 1 1417 4601 74 3 3 chr6 109115864 109116473 -40400564 + L1_Mus2 LINE L1 5958 6566 0 1 1417 634 305 98 75 chr6 109116473 109117126 -40399911 + L1MC4a LINE L1 7078 7755 -127 1 1417 432 230 83 69 chr6 109117139 109117284 -40399753 - ID_B1 SINE B4 0 224 78 1 1417 27 29 0 0 chr6 109118809 109118843 -40398194 + AT_rich Low_complexity Low_complexity 1 34 0 1 1417 657 300 108 57 chr6 109119257 109119589 -40397448 - ORR1E LTR MaLR -9 350 2 1 1417 246 288 12 70 chr6 109120215 109120301 -40396736 + ID2 SINE ID 2 82 -1 1 1417 2805 196 76 10 chr6 109120446 109121050 -40395987 + Lx5 LINE L1 6407 7050 0 1 1417 228 100 0 0 chr6 109121434 109121474 -40395563 + (CAGT)n Simple_repeat Simple_repeat 4 43 0 1 1417 639 90 0 0 chr6 109121476 109121576 -40395461 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1417 363 44 0 0 chr6 109121585 109121630 -40395407 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1417 32 0 0 0 chr6 109122343 109122375 -40394662 + AT_rich Low_complexity Low_complexity 1 32 0 1 1417 913 179 30 0 chr6 109122408 109122576 -40394461 + URR1B DNA MER1_type 53 225 0 1 1417 1431 267 27 16 chr6 109124028 109124394 -40392643 - ORR1D2 LTR MaLR 0 370 1 1 1417 203 0 0 36 chr6 109124622 109124650 -40392387 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1 1417 349 322 115 104 chr6 109124683 109124971 -40392066 - B4A SINE B4 0 292 2 1 1417 273 344 81 104 chr6 109125014 109125178 -40391859 + MLT1K LTR MaLR 271 424 -171 1 1417 1196 199 89 81 chr6 109125178 109125296 -40391741 - ORR1D1 LTR MaLR 0 374 236 1 1417 468 0 0 0 chr6 109125296 109125348 -40391689 + (CAGG)n Simple_repeat Simple_repeat 3 54 0 1 1417 1196 199 89 81 chr6 109125348 109125600 -40391437 - ORR1D1 LTR MaLR -139 235 1 1 1417 273 344 81 104 chr6 109125600 109125656 -40391381 + MLT1K LTR MaLR 425 485 -110 1 1417 288 429 0 0 chr6 109126581 109126693 -40390344 + L2b LINE L2 3257 3368 -7 1 1417 300 217 82 24 chr6 109127629 109127714 -40389323 + MIR SINE MIR 112 201 -61 1 1417 322 245 0 11 chr6 109128196 109128291 -40388746 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 1417 638 137 0 15 chr6 109128303 109128436 -40388601 + (CATA)n Simple_repeat Simple_repeat 4 134 0 1 1417 1250 291 117 19 chr6 109128572 109129392 -40387645 + L1MA9 LINE L1 5338 6237 -75 1 1417 297 169 35 70 chr6 109129413 109129585 -40387452 + (TA)n Simple_repeat Simple_repeat 2 167 0 1 1417 253 62 0 0 chr6 109129593 109129641 -40387396 + L1_Mus4 LINE L1 6589 6636 0 1 1417 1946 95 16 42 chr6 109129651 109129960 -40387077 - Lx LINE L1 -5 6649 6349 1 1417 348 24 0 0 chr6 109130304 109130345 -40386692 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1417 546 143 0 0 chr6 109130997 109131088 -40385949 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 1417 381 43 0 0 chr6 109131088 109131135 -40385902 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1417 185 65 32 0 chr6 109131205 109131236 -40385801 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1417 362 351 83 6 chr6 109131237 109131352 -40385685 - B4A SINE B4 -68 224 97 1 1417 981 85 0 0 chr6 109131352 109131482 -40385555 - B1_Mus2 SINE Alu -17 130 1 1 1417 362 351 83 6 chr6 109131482 109131535 -40385502 - B4A SINE B4 -196 96 44 1 1417 22 0 0 0 chr6 109131729 109131751 -40385286 + AT_rich Low_complexity Low_complexity 1 22 0 1 1417 357 43 0 0 chr6 109131810 109131857 -40385180 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1417 274 370 15 15 chr6 109132395 109132532 -40384505 - MIRb SINE MIR -93 175 39 1 1417 1547 244 29 9 chr6 109133416 109133763 -40383274 - ORR1D2 LTR MaLR -16 354 1 1 1417 286 302 46 28 chr6 109134396 109134505 -40382532 - MER5A1 DNA MER1_type -20 146 36 1 1417 354 318 29 88 chr6 109135674 109135827 -40381210 + L1ME1 LINE L1 5640 5778 -384 1 1417 1769 167 106 0 chr6 109135827 109136094 -40380943 + ORR1B2 LTR MaLR 3 300 -67 1 1417 396 0 0 0 chr6 109136094 109136138 -40380899 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1417 1769 167 106 0 chr6 109136138 109136200 -40380837 + ORR1B2 LTR MaLR 301 366 -1 1 1417 464 275 29 23 chr6 109136200 109136371 -40380666 + L1ME1 LINE L1 5778 5949 -230 1 1417 1546 78 2 1 chr6 109136426 109136645 -40380392 + L1Md_F2 LINE L1 5396 5607 -633 1 1417 7881 52 4 4 chr6 109136645 109137641 -40379396 + L1Md_F2 LINE L1 5587 6582 0 1 1417 374 318 15 22 chr6 109137778 109137913 -40379124 + B4A SINE B4 91 224 -68 1 1417 204 67 0 0 chr6 109138082 109138112 -40378925 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1417 1253 39 0 0 chr6 109138722 109138877 -40378160 + L1Md_T LINE L1 6428 6582 0 2 1417 858 260 15 0 chr6 109138879 109139079 -40377958 - B3 SINE B2 -13 203 1 2 1417 331 375 25 62 chr6 109139098 109139260 -40377777 - B3 SINE B2 0 216 61 2 1417 214 343 65 47 chr6 109140072 109140179 -40376858 + B3A SINE B2 66 174 -24 2 1417 245 29 29 0 chr6 109140181 109140215 -40376822 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1417 21 36 0 0 chr6 109141540 109141568 -40375469 + AT_rich Low_complexity Low_complexity 1 28 0 2 1417 590 276 100 13 chr6 109141873 109142104 -40374933 - Lx8 LINE L1 -334 7139 6889 2 1417 6506 130 33 4 chr6 109142101 109143202 -40373835 - Lx2 LINE L1 -28 6969 5837 2 1417 854 200 0 13 chr6 109143363 109143520 -40373517 + URR1B DNA MER1_type 1 155 -70 2 1417 1871 203 160 19 chr6 109143537 109144019 -40373018 + Lx4B LINE L1 6501 7050 -8 2 1417 506 111 12 0 chr6 109144040 109144121 -40372916 + URR1B DNA MER1_type 143 224 -1 2 1417 943 315 24 42 chr6 109144140 109144640 -40372397 - Lx9 LINE L1 -369 7275 6785 2 1417 567 0 0 0 chr6 109145339 109145402 -40371635 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1417 36270 42 0 3 chr6 109146191 109152571 -40364466 - L1Md_T LINE L1 0 6585 126 2 1417 261 298 98 15 chr6 109152883 109153076 -40363961 + MLT1B LTR MaLR 67 281 -186 2 1417 1755 235 17 5 chr6 109154341 109154752 -40362285 + MTD LTR MaLR 1 416 -3 2 1417 782 319 20 54 chr6 109156269 109156564 -40360473 - B4A SINE B4 0 292 8 2 1417 923 55 0 8 chr6 109156777 109156904 -40360133 + (TCTA)n Simple_repeat Simple_repeat 1 126 0 2 1417 278 267 28 9 chr6 109157822 109157928 -40359109 - L1M5 LINE L1 -324 5800 5693 2 1417 307 338 13 0 chr6 109158744 109158821 -40358216 + B1F SINE Alu 1 78 -71 2 1417 1129 214 105 6 chr6 109158821 109159145 -40357892 - Lx9 LINE L1 -595 7049 6694 2 1417 364 256 138 28 chr6 109159160 109159341 -40357696 - L1MA5 LINE L1 -22 6278 6078 2 1417 2646 78 37 0 chr6 109160662 109161036 -40356001 - L1_Mus3 LINE L1 -2 6636 6249 2 1417 2421 147 24 2 chr6 109161371 109161781 -40355256 + Lx3B LINE L1 6550 6968 -5 2 1417 631 347 73 51 chr6 109161971 109162423 -40354614 + LTR40b LTR ERVL 1 462 0 2 1417 282 261 0 0 chr6 109162649 109162760 -40354277 + (TG)n Simple_repeat Simple_repeat 2 112 0 2 1417 351 0 0 0 chr6 109162763 109162802 -40354235 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1417 596 323 76 47 chr6 109162807 109163083 -40353954 - B4A SINE B4 0 292 9 2 1417 2015 221 151 9 chr6 109163635 109164206 -40352831 + L1_Mur3 LINE L1 535 1186 -6542 2 1417 225 0 0 0 chr6 109164898 109164923 -40352114 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1417 1320 145 33 0 chr6 109164937 109165237 -40351800 + L1_Mur3 LINE L1 1176 1485 -4395 2 1417 3602 233 54 33 chr6 109165241 109165649 -40351388 + Lx7 LINE L1 6341 6755 -941 2 1417 306 0 0 0 chr6 109165649 109165683 -40351354 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1417 3602 233 54 33 chr6 109165683 109166164 -40350873 + Lx7 LINE L1 6756 7248 -448 2 1417 1712 141 45 0 chr6 109166164 109166433 -40350604 - Lx2B LINE L1 -13 6987 6707 2 1417 3602 233 54 33 chr6 109166433 109166548 -40350489 + Lx7 LINE L1 7249 7367 -329 2 1417 1160 233 18 27 chr6 109166618 109166953 -40350084 + Lx7 LINE L1 7360 7691 -5 2 1417 678 332 62 14 chr6 109167011 109167286 -40349751 - MLT1A0 LTR MaLR -52 313 26 2 1417 557 238 34 17 chr6 109167508 109167683 -40349354 + L1MB1 LINE L1 5602 5779 -389 2 1417 1731 252 31 8 chr6 109167719 109168110 -40348927 + MTD LTR MaLR 20 419 0 2 1417 428 259 137 31 chr6 109168116 109168371 -40348666 + L1MB1 LINE L1 5783 6064 -104 2 1417 642 264 158 25 chr6 109168452 109168693 -40348344 + B4A SINE B4 1 273 -19 2 1417 22 0 0 0 chr6 109169025 109169047 -40347990 + AT_rich Low_complexity Low_complexity 1 22 0 2 1417 967 232 9 14 chr6 109169047 109169257 -40347780 - B3 SINE B2 -7 209 1 2 1417 723 33 0 0 chr6 109169645 109169735 -40347302 + (TC)n Simple_repeat Simple_repeat 1 90 0 2 1417 189 266 27 123 chr6 109169742 109169815 -40347222 + L2c LINE L2 3284 3349 -38 2 1417 312 326 109 23 chr6 109170017 109170237 -40346800 + MER63D DNA AcHobo 108 346 -715 2 1417 821 232 16 25 chr6 109171059 109171302 -40345735 - Lx7 LINE L1 -11 7685 7445 2 1417 1054 92 0 7 chr6 109171802 109171944 -40345093 + B1_Mus2 SINE Alu 2 142 -5 2 1417 233 349 151 84 chr6 109172293 109172684 -40344353 - MLT1K LTR MaLR -128 467 51 2 1417 220 273 22 11 chr6 109174058 109174147 -40342890 + (TG)n Simple_repeat Simple_repeat 2 91 0 2 1417 672 307 35 35 chr6 109174152 109174439 -40342598 - B4 SINE B4 -4 288 2 2 1417 830 200 0 14 chr6 109174459 109174606 -40342431 - B1_Mur4 SINE Alu -3 147 3 2 1417 290 308 0 100 chr6 109174606 109174633 -40342404 - MT2B LTR ERVL -447 154 141 2 1417 186 43 0 0 chr6 109175267 109175290 -40341747 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1417 393 292 222 6 chr6 109175763 109175925 -40341112 + L2a LINE L2 3192 3388 -38 2 1417 25 31 0 0 chr6 109176438 109176470 -40340567 + AT_rich Low_complexity Low_complexity 1 32 0 2 1417 1655 185 73 40 chr6 109176480 109176852 -40340185 - ORR1C2 LTR MaLR 0 384 1 2 1417 372 364 14 0 chr6 109176936 109177079 -40339958 - MIRb SINE MIR -68 200 56 2 1417 245 324 40 40 chr6 109177552 109177703 -40339334 + MIR SINE MIR 110 260 -2 2 1417 244 339 63 75 chr6 109177905 109178240 -40338797 + L2 LINE L2 2639 2969 -450 2 1417 299 374 78 24 chr6 109178770 109178811 -40338226 - B4A SINE B4 -116 176 1 2 1417 674 246 0 0 chr6 109178811 109178937 -40338100 - B3A SINE B2 -72 126 1 2 1417 234 0 0 0 chr6 109179295 109179321 -40337716 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1417 569 250 22 29 chr6 109179410 109179546 -40337491 - B1F SINE Alu -1 148 14 2 1417 559 173 0 30 chr6 109180188 109180319 -40336718 + T-rich Low_complexity Low_complexity 2 128 0 2 1417 309 109 0 0 chr6 109180528 109180574 -40336463 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1417 428 277 108 13 chr6 109180655 109180812 -40336225 + MER2 DNA MER2_type 132 303 -42 2 1417 230 316 40 0 chr6 109180872 109180948 -40336089 + MLT1A1 LTR MaLR 325 403 -5 2 1417 254 381 17 8 chr6 109181599 109181718 -40335319 + MIRb SINE MIR 118 237 -31 2 1417 1037 103 16 60 chr6 109181774 109181959 -40335078 + L1_Mus3 LINE L1 6443 6619 -19 2 1417 474 18 0 0 chr6 109181959 109182014 -40335023 + (TAA)n Simple_repeat Simple_repeat 3 57 0 2 1418 200 303 13 0 chr6 109183016 109183092 -40333945 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1418 216 250 64 64 chr6 109184090 109184184 -40332853 - L4 LINE RTE -151 1878 1785 2 1418 571 263 22 7 chr6 109184411 109184549 -40332488 + B3A SINE B2 1 140 -58 2 1418 27460 108 12 77 chr6 109184747 109191378 -40325659 - L1_Mus1 LINE L1 -2 6565 387 2 1418 288 370 6 83 chr6 109191814 109191982 -40325055 + MER20B DNA MER1_type 21 175 -608 2 1418 186 185 54 36 chr6 109192203 109192259 -40324778 - MIR SINE MIR -38 224 168 2 1418 27 0 0 0 chr6 109193164 109193191 -40323846 + AT_rich Low_complexity Low_complexity 1 27 0 2 1418 2491 136 36 61 chr6 109193218 109193712 -40323325 - RLTR45 LTR ERVK 0 482 1 2 1418 1057 142 197 5 chr6 109193767 109193980 -40323057 - Lx2 LINE L1 0 6997 6744 2 1418 435 319 35 7 chr6 109193980 109194125 -40322912 + MER82 DNA MER2_type 34 182 -471 2 1418 233 325 99 70 chr6 109194657 109194829 -40322208 + MER5A DNA MER1_type 13 189 0 2 1418 647 313 5 14 chr6 109195717 109195931 -40321106 - B3 SINE B2 -4 212 1 2 1418 2529 130 20 10 chr6 109196443 109196838 -40320199 - RLTR9D LTR ERVK -3 400 2 2 1418 1475 63 5 0 chr6 109197426 109197616 -40319421 + B2_Mm1a SINE B2 1 191 -2 2 1418 208 241 0 0 chr6 109197782 109197840 -40319197 + T-rich Low_complexity Low_complexity 68 125 0 2 1418 521 319 60 6 chr6 109198201 109198384 -40318653 - B3A SINE B2 -2 196 4 2 1418 184 349 54 18 chr6 109198919 109199030 -40318007 - L2 LINE L2 -1333 2086 1972 2 1418 618 118 0 0 chr6 109199059 109199161 -40317876 + (TG)n Simple_repeat Simple_repeat 1 102 0 2 1418 887 301 4 67 chr6 109199162 109199451 -40317586 - B4 SINE B4 -23 269 2 2 1418 380 276 30 10 chr6 109200284 109200383 -40316654 - B1F SINE Alu -9 140 40 2 1418 1280 27 0 0 chr6 109200462 109200609 -40316428 + B1_Mm SINE Alu 1 147 0 2 1418 819 215 108 16 chr6 109200723 109200917 -40316120 + B3 SINE B2 5 216 0 2 1418 1784 232 52 5 chr6 109201269 109201637 -40315400 + MTD LTR MaLR 2 386 -33 2 1418 1992 233 92 8 chr6 109201641 109201845 -40315192 - RLTR18B LTR ERVK -5 507 262 2 1418 3649 101 31 13 chr6 109201845 109202395 -40314642 + Lx LINE L1 6081 6640 -14 2 1418 390 42 0 0 chr6 109202397 109202445 -40314592 + (GAAAA)n Simple_repeat Simple_repeat 4 51 0 2 1418 1992 233 92 8 chr6 109202445 109202705 -40314332 - RLTR18B LTR ERVK -251 261 3 2 1418 840 48 0 0 chr6 109202762 109202867 -40314170 + (TCCC)n Simple_repeat Simple_repeat 1 105 0 2 1418 420 279 186 61 chr6 109203247 109203526 -40313511 + MLT2D LTR ERVL 82 395 -19 2 1418 213 94 0 0 chr6 109203611 109203643 -40313394 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1418 405 0 0 0 chr6 109203713 109203758 -40313279 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1418 226 253 12 24 chr6 109205139 109205224 -40311813 + Lx7 LINE L1 7613 7696 0 2 1418 578 249 95 24 chr6 109205359 109205528 -40311509 - B3A SINE B2 -17 181 1 2 1418 303 292 50 64 chr6 109205627 109205769 -40311268 - MLT1A1 LTR MaLR 0 505 307 2 1418 621 273 7 34 chr6 109206131 109206279 -40310758 + B3A SINE B2 11 154 -44 3 1418 486 33 0 0 chr6 109206288 109206348 -40310689 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1418 644 104 27 54 chr6 109206627 109206739 -40310298 + PB1D9 SINE Alu 12 120 0 3 1418 360 0 0 0 chr6 109206785 109206825 -40310212 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1418 311 299 57 111 chr6 109207099 109207224 -40309813 - L1M5 LINE L1 -1677 4469 4342 3 1418 1247 21 0 14 chr6 109207224 109207372 -40309665 - B1_Mm SINE Alu 0 147 2 3 1418 311 299 57 111 chr6 109207372 109207562 -40309475 - L1M5 LINE L1 -1805 4341 4171 3 1418 696 273 68 0 chr6 109207748 109207953 -40309084 - ID_B1 SINE B4 -4 220 2 3 1418 1714 198 82 28 chr6 109208334 109208723 -40308314 - MTD LTR MaLR 0 419 10 3 1418 338 324 74 34 chr6 109209117 109209293 -40307744 - B3A SINE B2 -6 192 10 3 1418 653 295 54 0 chr6 109209146 109209295 -40307742 - RSINE1 SINE B4 0 165 9 3 1418 325 352 20 67 chr6 109209394 109209589 -40307448 - B4 SINE B4 0 292 107 3 1418 624 301 38 7 chr6 109209681 109209879 -40307158 - B3A SINE B2 -1 215 9 3 1418 367 378 57 38 chr6 109211430 109211587 -40305450 + RSINE1 SINE B4 2 161 -4 3 1418 1207 167 4 22 chr6 109212089 109212321 -40304716 + Lx2 LINE L1 6770 6997 0 3 1418 1903 190 39 22 chr6 109212341 109212702 -40304335 + ORR1C2 LTR MaLR 18 384 0 3 1418 984 292 76 42 chr6 109212702 109213043 -40303994 - MTD LTR MaLR -60 359 7 3 1418 1201 48 0 0 chr6 109213309 109213454 -40303583 + B1_Mm SINE Alu 1 145 -2 3 1418 348 94 0 0 chr6 109213454 109213507 -40303530 + (CAA)n Simple_repeat Simple_repeat 2 54 0 3 1418 417 49 0 0 chr6 109213762 109213823 -40303214 + Lx2 LINE L1 6936 6996 -1 3 1418 330 198 126 11 chr6 109213843 109213930 -40303107 + ORR1C2 LTR MaLR 12 108 -276 3 1418 280 381 14 14 chr6 109213930 109214071 -40302966 - Lx8 LINE L1 -217 7256 7116 3 1418 423 0 0 0 chr6 109214093 109214140 -40302897 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1418 208 225 0 0 chr6 109214141 109214181 -40302856 + (ATGGTG)n Simple_repeat Simple_repeat 6 45 0 3 1418 351 0 0 0 chr6 109214209 109214248 -40302789 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1418 384 59 0 0 chr6 109214248 109214298 -40302739 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1418 2602 254 58 27 chr6 109215132 109215862 -40301175 + Lx6 LINE L1 6705 7456 -4 3 1418 289 160 42 11 chr6 109216622 109216650 -40300387 + polypyrimidine Low_complexity Low_complexity 70 98 0 3 1418 1296 84 0 0 chr6 109216650 109216829 -40300208 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 3 1418 289 160 42 11 chr6 109216829 109216895 -40300142 + CT-rich Low_complexity Low_complexity 2 69 0 3 1418 10566 96 85 45 chr6 109216895 109218891 -40298146 - Lx3A LINE L1 0 6981 4862 3 1418 4776 126 58 40 chr6 109218891 109219777 -40297260 - RLTR13D6 LTR ERVK 0 902 1 3 1418 10566 87 148 71 chr6 109219777 109220957 -40296080 - Lx3A LINE L1 -1025 4861 3634 3 1418 26 30 0 0 chr6 109221763 109221796 -40295241 + AT_rich Low_complexity Low_complexity 1 33 0 3 1418 547 308 30 10 chr6 109221800 109221997 -40295040 - B3 SINE B2 -12 204 4 3 1418 740 297 139 35 chr6 109222286 109222608 -40294429 - L1MA5 LINE L1 -138 7183 6815 3 1418 378 0 0 0 chr6 109222608 109222650 -40294387 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1418 1448 288 113 38 chr6 109222650 109223415 -40293622 - L1MA5 LINE L1 -507 6814 5989 3 1418 345 47 0 0 chr6 109223415 109223458 -40293579 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1418 1448 280 89 40 chr6 109223458 109223981 -40293056 - L1MA5 LINE L1 -1173 5988 5444 3 1418 424 250 91 29 chr6 109223993 109224376 -40292661 - L1MA5 LINE L1 -2893 4268 3862 3 1418 584 237 69 109 chr6 109224427 109224602 -40292435 + MTD LTR MaLR 5 172 -247 3 1418 369 0 0 0 chr6 109224614 109224655 -40292382 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 3 1418 6842 174 49 9 chr6 109224656 109225972 -40291065 + Lx3C LINE L1 5607 6974 -2 3 1418 324 0 0 0 chr6 109225983 109226019 -40291018 + (CAA)n Simple_repeat Simple_repeat 3 38 0 3 1418 1621 159 51 51 chr6 109226388 109226720 -40290317 - Lx3C LINE L1 -3 6973 6642 3 1418 340 323 51 35 chr6 109226718 109227137 -40289900 - L1MA5 LINE L1 -4797 2301 1856 3 1418 422 65 16 0 chr6 109227471 109227533 -40289504 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1418 456 19 0 0 chr6 109227533 109227585 -40289452 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1418 967 266 78 54 chr6 109228347 109228717 -40288320 - MTE2b LTR MaLR 0 379 1 3 1418 233 322 46 0 chr6 109230883 109230970 -40286067 - MTD LTR MaLR 0 419 329 3 1418 274 358 63 21 chr6 109231815 109232006 -40285031 - MIR SINE MIR -36 226 28 3 1418 7427 62 20 9 chr6 109232516 109233338 -40283699 - L1_Mus1 LINE L1 0 6567 5735 3 1418 3778 66 2 0 chr6 109233338 109233810 -40283227 + MT2C_Mm LTR ERVL 3 475 0 3 1418 7427 96 22 14 chr6 109233810 109234257 -40282780 - L1_Mus1 LINE L1 -149 5734 5289 3 1418 26191 101 71 6 chr6 109234270 109239257 -40277780 - L1Md_F2 LINE L1 -16 6566 1234 3 1418 3662 198 60 9 chr6 109239250 109240021 -40277016 - L1Md_F2 LINE L1 -5582 1034 225 3 1418 4399 124 76 7 chr6 109241770 109242343 -40274694 + L1_Mur1 LINE L1 2857 3472 -2414 3 1418 4606 39 2 4 chr6 109242343 109242903 -40274134 + L1Md_F3 LINE L1 6012 6570 -14 3 1418 4399 124 76 7 chr6 109242903 109243143 -40273894 + L1_Mur1 LINE L1 3473 3725 -2161 3 1418 1712 178 102 17 chr6 109243515 109243869 -40273168 + ORR1C2 LTR MaLR 1 384 0 3 1418 260 309 62 0 chr6 109244354 109244435 -40272602 + MIRb SINE MIR 51 136 -132 3 1418 209 117 32 32 chr6 109244435 109244497 -40272540 + CT-rich Low_complexity Low_complexity 2 63 0 3 1418 8859 123 42 5 chr6 109244618 109246133 -40270904 - Lx2 LINE L1 -1 6996 5428 3 1418 899 272 29 9 chr6 109246234 109246544 -40270493 - L1MA5 LINE L1 -317 5923 5602 3 1418 5748 195 32 45 chr6 109246574 109247601 -40269436 - MTC-int LTR MaLR 0 1258 234 3 1418 3783 29 0 0 chr6 109247601 109248045 -40268992 - L1Md_T LINE L1 -2 6580 6137 3 1418 5748 195 32 45 chr6 109248045 109248291 -40268746 - MTC-int LTR MaLR -1025 233 2 3 1418 2020 222 17 5 chr6 109248290 109248701 -40268336 - MTC LTR MaLR 0 421 6 3 1418 670 293 40 0 chr6 109248737 109248911 -40268126 - ORR1E LTR MaLR -173 186 6 3 1418 180 176 0 0 chr6 109250700 109250734 -40266303 + (CATA)n Simple_repeat Simple_repeat 2 35 0 3 1418 978 281 64 16 chr6 109250776 109251132 -40265905 - MTD LTR MaLR 0 370 10 3 1418 330 331 109 34 chr6 109251183 109251449 -40265588 - L1ME3A LINE L1 -28 6145 5860 3 1418 312 381 39 10 chr6 109252140 109252344 -40264693 - L1ME3A LINE L1 -360 5802 5593 3 1418 528 291 31 75 chr6 109253116 109253276 -40263761 - RSINE1 SINE B4 -8 157 5 3 1418 345 305 22 45 chr6 109253594 109253728 -40263309 - Charlie15a DNA MER1_type -1 223 93 3 1418 289 257 122 17 chr6 109254473 109254588 -40262449 - MIR3 SINE MIR -25 183 57 3 1418 512 256 131 25 chr6 109254635 109254795 -40262242 - B3 SINE B2 -30 186 10 3 1418 184 161 0 0 chr6 109254871 109254902 -40262135 + MER5B DNA MER1_type 4 34 -144 3 1418 505 27 40 0 chr6 109255884 109255958 -40261079 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 3 1418 299 267 12 0 chr6 109255959 109256045 -40260992 + (TA)n Simple_repeat Simple_repeat 1 87 0 3 1418 530 24 23 23 chr6 109256315 109256401 -40260636 + (CATA)n Simple_repeat Simple_repeat 4 89 0 3 1418 416 358 19 57 chr6 109258217 109258374 -40258663 + B4A SINE B4 24 174 -118 3 1418 1986 203 19 0 chr6 109258375 109258754 -40258283 - Lx4B LINE L1 -378 6680 6295 3 1418 2533 191 6 0 chr6 109258791 109259279 -40257758 - Lx4B LINE L1 -979 6079 5589 3 1418 12372 157 27 69 chr6 109259280 109262258 -40254779 + L1_Mus4 LINE L1 3229 6072 -564 3 1418 505 300 75 71 chr6 109262294 109262574 -40254463 - MER90 LTR ERV1 -291 284 4 3 1418 22 0 0 0 chr6 109264084 109264106 -40252931 + AT_rich Low_complexity Low_complexity 1 22 0 3 1418 572 267 110 33 chr6 109264112 109264294 -40252743 - B3 SINE B2 -19 197 2 3 1418 3925 135 30 3 chr6 109264335 109264400 -40252637 + L1_Mur2 LINE L1 170 240 -6472 3 1418 459 0 0 0 chr6 109264400 109264451 -40252586 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1418 3925 135 30 3 chr6 109264451 109265022 -40252015 + L1_Mur2 LINE L1 241 823 -5889 3 1418 805 112 28 0 chr6 109265022 109265165 -40251872 + L1_Mus3 LINE L1 6485 6631 -7 3 1418 225 65 0 0 chr6 109265206 109265237 -40251800 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1418 232 333 12 0 chr6 109265291 109265372 -40251665 - L1_Mur3 LINE L1 -315 5565 5484 3 1418 16462 176 49 18 chr6 109265373 109266259 -40250778 + Lx4A LINE L1 1171 2062 -3818 3 1418 360 0 0 0 chr6 109266259 109266299 -40250738 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1418 16462 199 62 12 chr6 109266299 109269346 -40247691 + Lx4A LINE L1 2063 5297 -583 3 1418 954 133 57 23 chr6 109269346 109269523 -40247514 + Lx2 LINE L1 6814 6996 -1 3 1418 812 138 7 7 chr6 109269521 109269660 -40247377 + Lx4A LINE L1 5278 5416 -461 3 1418 253 21 0 20 chr6 109269658 109269707 -40247330 - L1Md_F3 LINE L1 0 6584 6537 3 1418 1174 29 0 0 chr6 109269707 109269843 -40247194 + L1Md_F3 LINE L1 6299 6434 -150 3 1418 8660 131 61 9 chr6 109269844 109271415 -40245622 + Lx4A LINE L1 5403 7058 0 3 1418 21 0 0 0 chr6 109271417 109271438 -40245599 + AT_rich Low_complexity Low_complexity 1 21 0 3 1418 1597 118 4 4 chr6 109271845 109272101 -40244936 - L1_Mus4 LINE L1 0 6636 6381 3 1418 1011 92 0 0 chr6 109272101 109272242 -40244795 - L1_Mus4 LINE L1 -481 6155 6015 3 1418 12400 146 87 66 chr6 109272267 109274724 -40242313 - L1_Mm LINE L1 -1032 4851 2475 3 1418 183 42 0 0 chr6 109274724 109274748 -40242289 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 1418 12400 146 87 66 chr6 109274748 109275075 -40241962 - L1_Mm LINE L1 -3409 2474 2009 3 1418 374 225 0 12 chr6 109275092 109275173 -40241864 - L1VL4 LINE L1 -6016 286 207 3 1418 243 361 56 37 chr6 109275289 109275450 -40241587 + RSINE1 SINE B4 2 165 0 3 1418 326 61 20 0 chr6 109275468 109275517 -40241520 + (CCA)n Simple_repeat Simple_repeat 1 50 0 3 1418 22 0 0 0 chr6 109275518 109275540 -40241497 + AT_rich Low_complexity Low_complexity 1 22 0 3 1418 677 299 226 22 chr6 109277325 109277627 -40239410 + MLT1A0 LTR MaLR 2 365 0 3 1418 513 0 0 0 chr6 109278062 109278119 -40238918 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1418 288 148 0 0 chr6 109278264 109278325 -40238712 + (TCTG)n Simple_repeat Simple_repeat 4 64 0 3 1418 245 300 0 14 chr6 109278420 109278491 -40238546 + MLT2B5 LTR ERVL 419 488 -67 3 1418 750 322 121 17 chr6 109279412 109279760 -40237277 - MLT1A1 LTR MaLR -2 406 23 3 1418 407 329 147 17 chr6 109279761 109279993 -40237044 - MLT1K LTR MaLR -327 268 7 3 1418 2048 153 98 43 chr6 109280041 109280512 -40236525 + RLTR25A LTR ERVK 495 1042 -61 3 1418 3978 146 30 10 chr6 109280522 109281098 -40235939 - Lx3C LINE L1 0 6976 6386 4 1418 2286 168 89 39 chr6 109281098 109281606 -40235431 + RMER16 LTR ERVK 1 533 0 4 1418 3978 146 30 10 chr6 109281606 109281699 -40235338 - Lx3C LINE L1 -591 6385 6294 4 1418 1115 106 12 6 chr6 109281701 109281863 -40235174 + Lx3B LINE L1 6151 6313 -660 4 1418 403 132 0 14 chr6 109281863 109281932 -40235105 + RLTR25A LTR ERVK 1036 1103 0 3 1418 232 394 120 49 chr6 109281935 109282384 -40234653 + LTR33 LTR ERVL 27 507 -8 4 1418 522 0 0 0 chr6 109282703 109282761 -40234276 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1418 356 239 6 0 chr6 109282955 109283118 -40233919 + GA-rich Low_complexity Low_complexity 2 165 0 4 1418 311 65 0 21 chr6 109283352 109283399 -40233638 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 1418 992 106 7 19 chr6 109283399 109283553 -40233484 - B2_Mm2 SINE B2 -42 153 2 4 1418 237 216 0 75 chr6 109283728 109283808 -40233229 - Lx8 LINE L1 -2 7471 7398 4 1418 1843 217 5 35 chr6 109284338 109284772 -40232265 - MTC LTR MaLR 0 421 1 4 1418 237 197 75 15 chr6 109285213 109285280 -40231757 + Lx6 LINE L1 7381 7451 -9 4 1418 231 78 39 19 chr6 109286507 109286559 -40230478 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1418 528 307 131 12 chr6 109286583 109286827 -40230210 - B4A SINE B4 -18 274 2 4 1418 254 293 40 0 chr6 109288201 109288276 -40228761 - PB1D10 SINE Alu -14 103 26 4 1418 3079 174 65 6 chr6 109289601 109290189 -40226848 + L1VL2 LINE L1 179 786 -5632 4 1418 9242 165 34 144 chr6 109290195 109292750 -40224287 + L1_Mur2 LINE L1 2747 5019 -858 4 1418 4018 132 76 10 chr6 109292756 109293437 -40223600 + L1_Mus4 LINE L1 5910 6635 -1 4 1418 748 258 125 13 chr6 109293786 109294010 -40223027 + ORR1D1 LTR MaLR 1 249 -125 4 1418 910 322 62 23 chr6 109294022 109294620 -40222417 + L1_Mur2 LINE L1 5114 5734 -146 4 1418 332 22 22 0 chr6 109294627 109294672 -40222365 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1418 965 83 0 7 chr6 109294833 109294979 -40222058 + L1_Mus2 LINE L1 6422 6566 0 4 1418 216 97 0 0 chr6 109296016 109296047 -40220990 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 4 1418 240 376 28 7 chr6 109296106 109296248 -40220789 + MIR SINE MIR 41 185 -77 4 1418 4342 51 2 4 chr6 109296519 109297069 -40219968 - L1Md_F2 LINE L1 -1 6581 6033 4 1418 758 304 60 38 chr6 109297168 109297435 -40219602 - B4A SINE B4 -18 274 2 4 1418 23 33 0 0 chr6 109297625 109297655 -40219382 + AT_rich Low_complexity Low_complexity 1 30 0 4 1418 236 338 0 0 chr6 109297703 109297774 -40219263 + RSINE1 SINE B4 10 80 -85 4 1418 951 78 0 0 chr6 109297776 109297905 -40219132 + (TAGA)n Simple_repeat Simple_repeat 4 132 0 4 1418 732 42 0 0 chr6 109297930 109298026 -40219011 + (GA)n Simple_repeat Simple_repeat 2 97 0 4 1418 306 0 0 0 chr6 109298100 109298134 -40218903 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 4 1418 652 303 33 28 chr6 109298630 109298844 -40218193 + MER20 DNA MER1_type 1 215 -4 4 1418 329 257 62 39 chr6 109298936 109299067 -40217970 + MTE2b LTR MaLR 249 379 0 4 1418 552 283 30 18 chr6 109299068 109299237 -40217800 + MTE2b-int LTR MaLR 4 174 -1406 4 1418 1447 60 6 0 chr6 109299241 109299424 -40217613 - L1Md_F2 LINE L1 -459 6123 5940 4 1418 1559 93 0 5 chr6 109299428 109299643 -40217394 + L1Md_F2 LINE L1 6357 6570 -12 4 1418 2491 331 71 42 chr6 109299656 109299868 -40217169 + MTE2b-int LTR MaLR 187 394 -1186 4 1418 1067 269 39 55 chr6 109299868 109300203 -40216834 - MTEa LTR MaLR 0 379 50 4 1418 474 49 0 0 chr6 109300203 109300264 -40216773 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1418 1067 269 39 55 chr6 109300264 109300313 -40216724 - MTEa LTR MaLR -330 49 1 4 1418 2491 331 71 42 chr6 109300313 109301264 -40215773 + MTE2b-int LTR MaLR 395 1384 -196 4 1418 2533 192 50 8 chr6 109301276 109301780 -40215257 - RMER5 LTR ERV1 -9 525 1 4 1418 447 252 70 64 chr6 109301780 109301936 -40215101 + MTE2b-int LTR MaLR 1381 1537 -43 4 1418 851 250 37 47 chr6 109301959 109302173 -40214864 + MTEa LTR MaLR 6 217 -162 4 1418 245 297 0 39 chr6 109302211 109302288 -40214749 + MTEa LTR MaLR 230 303 -76 4 1418 249 342 12 12 chr6 109302349 109302429 -40214608 + L2b LINE L2 3007 3086 -289 4 1418 201 147 0 0 chr6 109302552 109302586 -40214451 + (TTC)n Simple_repeat Simple_repeat 2 35 0 4 1418 1400 206 94 6 chr6 109303814 109304155 -40212882 - ORR1D1 LTR MaLR -3 371 1 4 1418 371 348 70 32 chr6 109304860 109305115 -40211922 + MIRb SINE MIR 4 262 -6 4 1418 447 329 68 27 chr6 109305993 109306215 -40210822 - MLT1C LTR MaLR -3 464 234 4 1418 964 312 12 1 chr6 109307084 109307359 -40209678 + MTE2b LTR MaLR 11 292 -87 4 1418 27373 68 3 0 chr6 109307367 109311690 -40205347 - L1Md_F2 LINE L1 0 6582 2248 4 177 37263 46 6 3 chr6 109311690 109317894 -40199143 - L1Md_T LINE L1 -2 6583 265 4 1419 250 222 16 0 chr6 109317900 109317963 -40199074 + MTE2b LTR MaLR 316 379 0 4 1419 7572 69 9 0 chr6 109318716 109319845 -40197192 + L1_Mus1 LINE L1 5427 6567 0 4 1419 24 32 0 0 chr6 109319985 109320016 -40197021 + AT_rich Low_complexity Low_complexity 1 31 0 4 1419 513 0 0 0 chr6 109320860 109320917 -40196120 + (TCCC)n Simple_repeat Simple_repeat 2 58 0 4 1419 342 0 0 0 chr6 109320925 109320963 -40196074 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1419 663 274 73 0 chr6 109320968 109321132 -40195905 - B3A SINE B2 -22 176 1 4 1419 243 0 0 0 chr6 109322367 109322394 -40194643 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1419 2135 203 93 57 chr6 109322397 109322925 -40194112 + RMER2 LTR ERV1 21 567 0 4 1419 2495 138 98 8 chr6 109323221 109323698 -40193339 + RLTR28 LTR ERVL 1 520 -4 4 1419 442 272 113 6 chr6 109324091 109324250 -40192787 + MER5A DNA MER1_type 14 189 0 4 1419 217 304 150 14 chr6 109324949 109325089 -40191948 + L3b LINE CR1 183 341 -141 4 1419 686 341 76 50 chr6 109325426 109326070 -40190967 - Lx8 LINE L1 -1033 6440 5780 4 1419 19748 101 4 50 chr6 109326077 109327671 -40189366 - L1_Mus1 LINE L1 0 6567 5228 4 1419 705 24 0 0 chr6 109327671 109327754 -40189283 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 1419 19748 181 9 131 chr6 109327754 109331536 -40185501 - L1_Mus1 LINE L1 -659 5227 1705 4 1419 597 64 0 0 chr6 109331536 109331614 -40185423 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 4 1419 963 93 0 0 chr6 109331623 109331752 -40185285 - B1_Mus1 SINE Alu 0 148 20 4 1419 19748 152 11 54 chr6 109331752 109332894 -40184143 - L1_Mus1 LINE L1 -4182 1696 554 4 1419 870 284 28 21 chr6 109332930 109333218 -40183819 - Lx8 LINE L1 -628 5252 4963 4 1419 738 313 105 44 chr6 109333348 109333692 -40183345 - ORR1D2 LTR MaLR -5 365 1 4 1419 370 281 29 58 chr6 109333848 109334022 -40183015 + L1MD3 LINE L1 7733 7901 -94 4 1419 614 256 72 18 chr6 109334237 109334404 -40182633 - MTEa LTR MaLR 0 379 204 4 1419 226 333 0 27 chr6 109334444 109334518 -40182519 - MTEa LTR MaLR -257 102 31 4 1419 379 337 0 19 chr6 109334592 109334695 -40182342 + ID_B1 SINE B4 86 186 -38 4 1419 403 315 24 64 chr6 109334695 109334713 -40182324 + PB1D10 SINE Alu 5 120 0 4 1419 522 70 0 0 chr6 109334726 109334797 -40182240 + (TTTTA)n Simple_repeat Simple_repeat 5 75 0 4 1419 378 319 24 32 chr6 109335065 109335188 -40181849 - B3A SINE B2 -47 151 30 4 1419 189 0 0 0 chr6 109335603 109335624 -40181413 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 4 1419 473 287 121 26 chr6 109335642 109335920 -40181117 - MLT1A1 LTR MaLR -23 342 78 4 1419 444 67 0 0 chr6 109336316 109336376 -40180661 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1419 23 33 0 0 chr6 109337913 109337943 -40179094 + AT_rich Low_complexity Low_complexity 1 30 0 4 1419 544 282 154 19 chr6 109338546 109338798 -40178239 - B4A SINE B4 -4 288 3 4 1419 235 45 0 64 chr6 109340721 109340768 -40176269 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 4 1419 318 80 0 0 chr6 109340776 109340826 -40176211 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 4 1419 291 85 0 0 chr6 109341106 109341153 -40175884 + (T)n Simple_repeat Simple_repeat 1 47 0 4 1419 531 0 0 0 chr6 109341789 109341848 -40175189 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1419 429 294 54 38 chr6 109341863 109342021 -40175016 + MER58A DNA MER1_type 11 290 -2130 4 1419 4009 135 99 0 chr6 109342102 109342769 -40174268 - Lx2 LINE L1 -6 6991 6259 4 1419 360 0 0 0 chr6 109342981 109343021 -40174016 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1419 4374 160 7 5 chr6 109343167 109343913 -40173124 + Lx2 LINE L1 6249 6995 -2 4 1419 485 240 130 88 chr6 109344051 109344377 -40172660 - RLTR11B LTR ERVK -149 292 4 4 1419 1186 54 0 7 chr6 109344439 109344588 -40172449 - B1_Mus1 SINE Alu 0 148 1 4 1419 764 44 0 17 chr6 109344597 109344712 -40172325 - L1Md_F2 LINE L1 -1 6581 6469 4 1419 180 295 0 47 chr6 109344730 109344794 -40172243 - L3 LINE CR1 -3506 983 923 4 1419 17740 72 19 9 chr6 109344974 109348080 -40168957 - L1Md_F2 LINE L1 -13 6569 3434 4 1419 439 335 27 70 chr6 109348103 109348289 -40168748 - B3A SINE B2 0 198 21 4 1419 350 265 99 52 chr6 109348316 109348507 -40168530 - L1MC LINE L1 -1869 4277 4078 4 1419 659 329 40 28 chr6 109348507 109348760 -40168277 + MLT1A0 LTR MaLR 110 365 0 4 1419 326 255 9 105 chr6 109348823 109348937 -40168100 - B3A SINE B2 -13 185 83 4 1419 343 89 176 31 chr6 109348997 109349088 -40167949 + B1_Mm SINE Alu 2 147 0 4 1419 270 0 0 0 chr6 109349088 109349118 -40167919 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1419 410 272 87 0 chr6 109349128 109349301 -40167736 - L1M3 LINE L1 -809 5331 5144 4 1419 545 354 80 10 chr6 109349309 109349623 -40167414 + MER2 DNA MER2_type 1 336 -9 4 1419 506 261 95 5 chr6 109349681 109349870 -40167167 - L1MC LINE L1 -2429 3717 3512 4 1419 277 280 61 61 chr6 109349915 109350029 -40167008 - PB1D10 SINE Alu -2 115 2 4 1419 2095 121 12 32 chr6 109350052 109350394 -40166643 - Lx2 LINE L1 0 6997 6663 4 1419 332 274 0 14 chr6 109350399 109350473 -40166564 - ORR1E LTR MaLR -258 101 29 4 1419 378 294 81 52 chr6 109350522 109350871 -40166166 - L1MC LINE L1 -2797 3349 3011 4 1419 471 18 0 0 chr6 109350871 109350927 -40166110 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 4 1419 378 294 81 52 chr6 109350927 109351157 -40165880 - L1MC LINE L1 -3136 3010 2753 4 1419 309 308 276 36 chr6 109351249 109351441 -40165596 + B4A SINE B4 55 292 0 4 1419 646 313 75 14 chr6 109351493 109351908 -40165129 - L1MC LINE L1 -3391 2755 2316 4 1419 459 0 0 0 chr6 109352099 109352150 -40164887 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 4 1419 1181 49 7 0 chr6 109352150 109352294 -40164743 - B1_Mm SINE Alu -2 145 1 4 1419 23 68 0 0 chr6 109353273 109353317 -40163720 + AT_rich Low_complexity Low_complexity 1 44 0 5 1419 1620 156 22 41 chr6 109353928 109354243 -40162794 - Lx4A LINE L1 0 7058 6750 5 1419 277 100 0 0 chr6 109354254 109354294 -40162743 - RLTR18-int LTR ERVK -418 4943 4904 5 1419 3469 243 36 73 chr6 109354301 109355228 -40161809 + ORR1D1-int LTR MaLR 479 1370 0 5 1419 956 244 149 36 chr6 109355228 109355564 -40161473 + ORR1D1 LTR MaLR 1 374 0 5 1419 645 14 0 0 chr6 109355615 109355689 -40161348 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1419 336 316 0 0 chr6 109355835 109355911 -40161126 - PB1D10 SINE Alu -41 76 1 5 1419 407 277 35 55 chr6 109356343 109356488 -40160549 - B1F SINE Alu -3 146 5 5 1419 27 29 0 0 chr6 109356689 109356723 -40160314 + AT_rich Low_complexity Low_complexity 1 34 0 5 1419 280 282 70 39 chr6 109357516 109357645 -40159392 - MIRb SINE MIR 0 268 136 5 1419 187 320 0 0 chr6 109358686 109358736 -40158301 + MIRc SINE MIR 85 134 -134 5 1419 910 320 147 21 chr6 109360179 109360661 -40156376 - MER89 LTR ERV1 -14 545 3 5 1419 334 343 33 14 chr6 109360672 109360882 -40156155 - L1ME1 LINE L1 -30 6149 5936 5 1419 375 23 0 0 chr6 109362923 109362967 -40154070 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1419 240 286 0 0 chr6 109362974 109363030 -40154007 + L2b LINE L2 3320 3375 0 5 1419 36 40 0 0 chr6 109363181 109363231 -40153806 + AT_rich Low_complexity Low_complexity 1 50 0 5 1419 272 143 0 18 chr6 109363329 109363386 -40153651 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 5 1419 26 74 0 0 chr6 109363386 109363440 -40153597 + AT_rich Low_complexity Low_complexity 1 54 0 5 1419 22 35 0 0 chr6 109363482 109363511 -40153526 + AT_rich Low_complexity Low_complexity 1 29 0 5 1419 342 0 0 0 chr6 109363520 109363558 -40153479 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1419 369 0 0 0 chr6 109363558 109363598 -40153439 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1419 242 0 0 57 chr6 109363734 109363769 -40153268 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 5 1419 189 171 0 0 chr6 109363782 109363817 -40153220 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1419 292 211 137 0 chr6 109363956 109364051 -40152986 - L1MA9 LINE L1 -201 6111 6004 5 1419 6456 161 35 5 chr6 109364060 109365667 -40151370 - Lx LINE L1 0 6654 4990 5 1419 5782 134 21 11 chr6 109365662 109366579 -40150458 - Lx LINE L1 -3 6651 5726 5 1419 1201 159 5 5 chr6 109366576 109366785 -40150252 - Lx LINE L1 -889 4994 4786 5 1419 8320 132 15 0 chr6 109366794 109366873 -40150164 + L1_Mur2 LINE L1 3391 3469 -2408 5 1419 225 0 0 0 chr6 109366873 109366898 -40150139 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 5 1419 8320 132 15 0 chr6 109366898 109368180 -40148857 + L1_Mur2 LINE L1 3470 4772 -1105 5 1419 365 135 149 0 chr6 109368194 109368268 -40148769 - L1_Mur2 LINE L1 -647 5230 5146 5 1419 23 54 0 0 chr6 109368471 109368508 -40148529 + AT_rich Low_complexity Low_complexity 1 37 0 5 1419 849 272 123 37 chr6 109368635 109368959 -40148078 - ORR1E LTR MaLR -4 355 4 5 1419 324 303 0 0 chr6 109369368 109369457 -40147580 + MIR SINE MIR 63 151 -57 5 1419 207 0 0 0 chr6 109370373 109370396 -40146641 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 5 1419 35096 78 3 13 chr6 109371705 109378049 -40138988 - L1Md_F2 LINE L1 -1 6581 307 5 1419 685 245 22 0 chr6 109378488 109378627 -40138410 + B1_Mur3 SINE Alu 1 142 -7 5 1419 393 260 10 39 chr6 109379247 109379351 -40137686 + PB1D10 SINE Alu 17 117 0 5 1419 377 311 41 18 chr6 109379965 109380135 -40136902 + L1MB8 LINE L1 5516 5689 -489 5 1419 1818 98 0 36 chr6 109380522 109380797 -40136240 - L1Md_F2 LINE L1 -14 6568 6304 5 1419 349 293 184 16 chr6 109380811 109381127 -40135910 + L1MB8 LINE L1 5774 6142 -36 5 1419 21 36 0 0 chr6 109381210 109381238 -40135799 + AT_rich Low_complexity Low_complexity 1 28 0 5 1419 215 355 21 0 chr6 109381666 109381759 -40135278 - PB1D7 SINE Alu -9 111 17 5 1419 426 364 0 34 chr6 109381871 109382019 -40135018 + RSINE1 SINE B4 6 148 -17 5 1419 1092 296 110 30 chr6 109382088 109382552 -40134485 - Lx8 LINE L1 -562 6911 6411 5 1419 528 16 0 0 chr6 109382637 109382698 -40134339 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1419 1086 271 160 16 chr6 109382698 109382842 -40134195 - MER31A LTR ERV1 0 485 324 5 1419 4785 47 8 2 chr6 109382842 109383435 -40133602 - L1Md_F3 LINE L1 0 6584 5988 5 1419 1086 271 160 16 chr6 109383435 109383714 -40133323 - MER31A LTR ERV1 -162 323 3 5 1419 446 285 120 103 chr6 109384367 109384551 -40132486 + B3A SINE B2 11 197 -1 5 1419 21 0 0 0 chr6 109387830 109387851 -40129186 + AT_rich Low_complexity Low_complexity 1 21 0 5 1419 571 254 7 0 chr6 109388014 109388156 -40128881 + B1_Mus2 SINE Alu 2 144 -3 5 1419 1191 316 48 7 chr6 109388291 109388708 -40128329 - Lx8 LINE L1 -135 7338 6905 5 1419 261 274 110 28 chr6 109389026 109389135 -40127902 + MIRb SINE MIR 129 246 -22 5 1419 180 224 102 0 chr6 109389289 109389338 -40127699 + L3 LINE CR1 1026 1079 -3410 5 1419 443 324 7 14 chr6 109389698 109389842 -40127195 + MTD LTR MaLR 5 147 -272 5 1419 360 325 70 16 chr6 109389973 109390101 -40126936 + ID_B1 SINE B4 82 216 -8 5 1419 526 269 45 9 chr6 109390185 109390406 -40126631 + L1MB8 LINE L1 5668 5896 -282 5 1419 1178 223 31 0 chr6 109390419 109390706 -40126331 - Lx5 LINE L1 -921 6129 5834 5 1419 4279 185 53 17 chr6 109390712 109391613 -40125424 + Lx5 LINE L1 6117 7050 0 5 1419 28 0 0 0 chr6 109391931 109391959 -40125078 + AT_rich Low_complexity Low_complexity 1 28 0 5 1419 458 137 59 0 chr6 109391968 109392070 -40124967 - Lx3C LINE L1 -7 6969 6862 5 1419 396 0 0 0 chr6 109392391 109392435 -40124602 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1419 1370 207 53 17 chr6 109392898 109393227 -40123810 + ORR1C2 LTR MaLR 14 384 0 5 1419 450 0 0 0 chr6 109393266 109393316 -40123721 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 5 1419 1838 225 52 32 chr6 109395616 109395752 -40121285 + L1_Rod LINE L1 3577 3697 -2150 5 1419 243 0 0 0 chr6 109395752 109395779 -40121258 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 5 1419 1838 225 52 32 chr6 109395779 109396235 -40120802 + L1_Rod LINE L1 3698 4181 -1666 5 1419 620 210 8 0 chr6 109396257 109396381 -40120656 + Lx9 LINE L1 6431 6555 -1089 5 1419 1332 229 63 18 chr6 109396519 109397025 -40120012 - Lx3C LINE L1 -2 6979 6432 5 1419 237 128 0 0 chr6 109397217 109397264 -40119773 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 5 1419 853 119 0 0 chr6 109397313 109397439 -40119598 - B1_Mus1 SINE Alu -21 127 2 5 1419 465 258 6 104 chr6 109397439 109397508 -40119529 - ID SINE ID -144 80 30 5 1419 643 292 12 6 chr6 109399065 109399227 -40117810 - RSINE1 SINE B4 -2 163 1 5 1419 825 355 120 71 chr6 109399940 109400049 -40116988 + MER21B LTR ERV1 1 117 -746 5 1419 444 67 0 0 chr6 109400049 109400109 -40116928 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1419 825 355 120 71 chr6 109400109 109400193 -40116844 + MER21B LTR ERV1 118 182 -681 5 1419 645 279 103 88 chr6 109400193 109400715 -40116322 - MT2A LTR ERVL -3 530 1 5 1419 825 355 120 71 chr6 109400715 109401212 -40115825 + MER21B LTR ERV1 183 726 -137 5 1419 556 325 95 2 chr6 109401752 109402001 -40115036 - MTEb LTR MaLR 0 379 115 5 1419 327 282 12 0 chr6 109402010 109402143 -40114894 + L1MA4 LINE L1 5807 5942 -247 5 1419 510 17 0 0 chr6 109402152 109402211 -40114826 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1419 655 271 6 13 chr6 109403077 109403234 -40113803 + B3 SINE B2 4 159 -57 5 1419 3526 105 6 4 chr6 109403252 109403769 -40113268 + L1_Mus3 LINE L1 6115 6632 -6 5 1419 211 189 38 0 chr6 109403966 109404019 -40113018 + T-rich Low_complexity Low_complexity 2 56 0 5 1419 201 79 37 73 chr6 109405083 109405165 -40111872 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 5 1419 1018 84 7 7 chr6 109405166 109405309 -40111728 - B1_Mus1 SINE Alu 0 148 6 5 1419 243 0 0 0 chr6 109406106 109406133 -40110904 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1419 503 315 44 15 chr6 109406576 109406782 -40110255 - B3 SINE B2 0 216 5 5 1419 579 311 123 22 chr6 109406888 109407164 -40109873 + RMER5 LTR ERV1 231 534 0 5 1419 535 348 91 5 chr6 109407662 109407870 -40109167 + B4A SINE B4 5 230 -62 5 1419 237 119 0 0 chr6 109407894 109407936 -40109101 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 5 1419 732 103 0 0 chr6 109407972 109408079 -40108958 + (GGAA)n Simple_repeat Simple_repeat 2 108 0 5 1419 222 150 0 24 chr6 109408485 109408526 -40108511 - PB1D9 SINE Alu -1 119 80 5 1419 292 250 0 0 chr6 109408521 109408585 -40108452 - B3A SINE B2 -134 64 1 5 1419 224 344 0 11 chr6 109408846 109408940 -40108097 - MIR SINE MIR -114 148 56 5 1419 237 294 88 44 chr6 109409134 109409294 -40107743 + L1MB1 LINE L1 5951 6117 -51 5 1419 528 146 0 0 chr6 109409297 109409400 -40107637 + (TG)n Simple_repeat Simple_repeat 1 103 0 5 1419 281 270 0 86 chr6 109409434 109409515 -40107522 - B4 SINE B4 -4 288 215 5 1419 291 297 161 92 chr6 109409556 109409686 -40107351 - B3A SINE B2 -59 139 1 5 1419 236 260 162 14 chr6 109409689 109409763 -40107274 - B4 SINE B4 -205 87 3 5 1419 4361 40 0 2 chr6 109409821 109410342 -40106695 - L1Md_F2 LINE L1 -15 6567 6048 5 1419 186 387 72 14 chr6 109410388 109410527 -40106510 + MIRb SINE MIR 31 177 -91 5 1419 3112 307 58 22 chr6 109410703 109412030 -40105007 - Lx8 LINE L1 -1 7472 6098 5 1419 294 290 63 21 chr6 109412220 109412315 -40104722 - PB1D10 SINE Alu -18 99 1 5 1419 1618 149 14 24 chr6 109412460 109412749 -40104288 - RMER6C LTR ERVK 0 690 405 5 1419 324 278 70 30 chr6 109413609 109413709 -40103328 + Cheshire DNA MER1_type 176 279 -2141 5 1419 207 100 0 0 chr6 109413796 109413826 -40103211 + (TTG)n Simple_repeat Simple_repeat 1 30 0 5 1419 663 298 0 0 chr6 109415147 109415288 -40101749 + ID_B1 SINE B4 81 221 -3 5 1419 1407 114 0 14 chr6 109415330 109415625 -40101412 + (CCAA)n Simple_repeat Simple_repeat 1 291 0 5 1419 261 0 0 0 chr6 109416083 109416112 -40100925 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 6 1419 227 73 49 0 chr6 109417066 109417107 -40099930 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1419 749 234 0 0 chr6 109417116 109417257 -40099780 - B1_Mur3 SINE Alu -7 142 2 6 1419 511 214 51 17 chr6 109417262 109417380 -40099657 - ID_B1 SINE B4 -26 198 81 6 1419 366 23 0 0 chr6 109420027 109420070 -40096967 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1419 294 143 0 0 chr6 109420084 109420133 -40096904 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1419 1254 70 21 5 chr6 109420230 109420417 -40096620 + L1_Mus3 LINE L1 6245 6434 -204 6 1419 322 92 0 0 chr6 109420418 109420483 -40096554 + L1_Mus3 LINE L1 6572 6636 0 6 1419 681 101 0 0 chr6 109421845 109421944 -40095093 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 1419 3037 263 123 83 chr6 109423643 109424859 -40092178 - Lx5 LINE L1 -2 7048 5784 6 1419 288 0 0 0 chr6 109424865 109424897 -40092140 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 6 1419 3382 166 43 74 chr6 109424914 109425749 -40091288 + RMER17D2 LTR ERVK 1 809 0 6 1419 3916 178 46 16 chr6 109425767 109426597 -40090440 - Lx5 LINE L1 -160 5717 4863 6 1419 2712 144 15 21 chr6 109426599 109427124 -40089913 - Lx5 LINE L1 -1678 4199 3678 6 1419 265 318 93 0 chr6 109427507 109427636 -40089401 + B1_Mur2 SINE Alu 1 141 -8 6 1419 279 0 0 0 chr6 109427821 109427852 -40089185 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1419 216 0 0 0 chr6 109427988 109428012 -40089025 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1419 222 128 0 0 chr6 109428661 109428700 -40088337 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1419 2798 56 9 0 chr6 109429384 109429725 -40087312 - ORR1A1 LTR MaLR 0 346 3 6 1419 200 114 0 28 chr6 109430506 109430542 -40086495 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1419 328 282 58 0 chr6 109430807 109430910 -40086127 + (CATG)n Simple_repeat Simple_repeat 2 110 0 6 1419 536 296 131 41 chr6 109430950 109431218 -40085819 - B4 SINE B4 0 292 1 6 1419 581 351 5 35 chr6 109431282 109431480 -40085557 - B3A SINE B2 0 198 7 6 1419 355 311 71 43 chr6 109432115 109432480 -40084557 - L2b LINE L2 0 3426 3044 6 1419 706 323 133 12 chr6 109432813 109433136 -40083901 - MTE2b LTR MaLR -17 362 1 6 1419 234 91 0 0 chr6 109433462 109433495 -40083542 + (TCC)n Simple_repeat Simple_repeat 3 35 0 6 1419 180 0 0 0 chr6 109434097 109434117 -40082920 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1419 708 23 0 0 chr6 109434117 109434202 -40082835 + (GA)n Simple_repeat Simple_repeat 1 86 0 6 1419 3350 220 108 33 chr6 109434423 109435367 -40081670 - RMER1B Other Other -1 1029 40 6 1419 254 309 186 23 chr6 109435504 109435719 -40081318 - MIRb SINE MIR -15 253 4 6 1419 217 265 0 20 chr6 109436326 109436376 -40080661 - MER5A DNA MER1_type -3 186 138 6 1419 1101 279 11 7 chr6 109436531 109436805 -40080232 + B4A SINE B4 2 276 -16 6 1419 423 38 0 0 chr6 109437150 109437203 -40079834 + (CCAA)n Simple_repeat Simple_repeat 2 54 0 6 1419 346 241 11 11 chr6 109438106 109438211 -40078826 - MLT1A1 LTR MaLR -16 392 256 6 1419 27179 89 93 15 chr6 109438539 109443296 -40073741 + L1Md_F2 LINE L1 415 5573 -310 6 1419 7602 63 11 3 chr6 109443296 109444279 -40072758 + L1Md_F2 LINE L1 5587 6577 -5 6 177 7455 56 1 4 chr6 109444279 109445273 -40071764 + L1Md_F2 LINE L1 5574 6561 -21 6 1420 311 359 84 47 chr6 109445610 109445885 -40071152 - ORR1E LTR MaLR 0 359 75 6 1420 180 0 0 0 chr6 109446537 109446557 -40070480 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6 1420 252 0 0 0 chr6 109446932 109446960 -40070077 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 6 1420 2974 117 39 0 chr6 109446960 109447417 -40069620 - Lx3_Mus LINE L1 -12 6997 6523 6 1420 3048 95 134 39 chr6 109447417 109447662 -40069375 + Lx3_Mus LINE L1 5849 6087 -922 6 1420 444 37 0 0 chr6 109447662 109447716 -40069321 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1420 3048 95 134 39 chr6 109447716 109448059 -40068978 + Lx3_Mus LINE L1 6088 6493 -516 6 1420 3339 28 13 0 chr6 109448226 109448617 -40068420 - MTA_Mm LTR MaLR 0 396 1 6 1420 9141 37 2 1 chr6 109448617 109449714 -40067323 - MTA_Mm-int LTR MaLR 0 1098 1 6 1420 3459 25 2 0 chr6 109449714 109450109 -40066928 - MTA_Mm LTR MaLR 0 396 1 6 1420 840 310 34 64 chr6 109450197 109450524 -40066513 - MTEa LTR MaLR 0 379 63 6 1420 261 302 0 0 chr6 109450554 109450617 -40066420 - MTEa LTR MaLR -316 63 1 6 1420 288 294 91 74 chr6 109450856 109451032 -40066005 - Lx8 LINE L1 -904 6569 6391 6 1420 1363 347 35 3 chr6 109451034 109451693 -40065344 + Lx8 LINE L1 6555 7234 -239 6 1420 285 248 64 57 chr6 109451689 109451830 -40065207 + Lx6 LINE L1 7319 7460 0 6 1420 244 347 27 0 chr6 109451837 109451912 -40065125 + ID4 SINE ID 4 80 -3 6 1420 685 328 94 23 chr6 109452002 109452311 -40064726 + MLT2D LTR ERVL 1 331 -83 6 1420 414 0 0 0 chr6 109454121 109454167 -40062870 + (CAAG)n Simple_repeat Simple_repeat 1 46 0 6 1420 569 315 7 0 chr6 109454208 109454351 -40062686 + RSINE1 SINE B4 4 147 -18 6 1420 2203 48 10 0 chr6 109454482 109454774 -40062263 - L1Md_F3 LINE L1 -390 6194 5900 6 1420 2556 54 12 9 chr6 109454774 109455109 -40061928 + L1Md_F3 LINE L1 6235 6570 -14 6 1420 2743 28 28 8 chr6 109455112 109455467 -40061570 - LSU-rRNA_Hsa rRNA rRNA -3105 1930 1569 6 1420 2980 108 5 2 chr6 109456345 109456783 -40060254 - L1_Mus3 LINE L1 -6 6632 6194 6 1420 2367 236 14 23 chr6 109456798 109457366 -40059671 - Lx5 LINE L1 -5 7045 6483 6 1420 350 194 18 80 chr6 109457956 109458068 -40058969 - MTE2b LTR MaLR -6 373 269 6 1420 1318 261 16 82 chr6 109458069 109458448 -40058589 + MTE2a LTR MaLR 19 372 -7 6 1420 703 311 48 0 chr6 109458452 109458658 -40058379 - MTE2b LTR MaLR -106 273 58 6 1420 1527 229 34 81 chr6 109458790 109459199 -40057838 - MTD LTR MaLR 0 419 30 6 1420 495 0 0 0 chr6 109459414 109459469 -40057568 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1420 390 255 69 0 chr6 109459875 109459977 -40057060 - MER58A DNA MER1_type -1 223 115 6 1420 235 260 0 115 chr6 109460045 109460132 -40056905 - MER58A DNA MER1_type -127 97 21 6 1420 352 363 0 0 chr6 109460166 109460268 -40056769 - PB1D10 SINE Alu -15 102 1 6 1420 339 374 0 0 chr6 109460570 109460677 -40056360 + Cheshire DNA MER1_type 173 279 -2141 6 1420 678 235 35 23 chr6 109460744 109460918 -40056119 + MLT1G3 LTR MaLR 420 595 0 6 1420 22 0 0 0 chr6 109461408 109461430 -40055607 + AT_rich Low_complexity Low_complexity 1 22 0 6 1420 1130 28 0 14 chr6 109461980 109462123 -40054914 + (GGGAGA)n Simple_repeat Simple_repeat 3 143 0 6 1420 731 245 52 0 chr6 109462458 109462650 -40054387 - B3 SINE B2 -10 206 5 6 1420 313 406 29 0 chr6 109462666 109462804 -40054233 - B1F SINE Alu -7 142 1 6 1420 270 298 46 69 chr6 109462816 109462946 -40054091 + MIRb SINE MIR 116 242 -26 6 1420 449 265 76 38 chr6 109464450 109464607 -40052430 - MER117 DNA MER1_type -33 164 2 6 1420 275 218 194 0 chr6 109464950 109465074 -40051963 - Zaphod DNA Tip100 -330 3701 3554 6 1420 3006 72 2 54 chr6 109465335 109465777 -40051260 + BGLII LTR ERVK 1 419 -2 6 1420 3912 31 0 18 chr6 109466824 109467317 -40049720 + L1Md_F2 LINE L1 6078 6561 -21 6 1420 486 0 0 0 chr6 109467317 109467371 -40049666 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1420 23 0 0 0 chr6 109468082 109468105 -40048932 + AT_rich Low_complexity Low_complexity 1 23 0 6 1420 267 79 0 0 chr6 109468105 109468143 -40048894 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1420 775 304 87 47 chr6 109468175 109468451 -40048586 - B4A SINE B4 0 292 6 6 1420 576 0 0 0 chr6 109469016 109469080 -40047957 + (TC)n Simple_repeat Simple_repeat 2 65 0 6 1420 749 293 104 17 chr6 109469105 109469457 -40047580 + RMER15 LTR ERVL 1 573 -2 6 1420 42 0 0 0 chr6 109469654 109469696 -40047341 + AT_rich Low_complexity Low_complexity 1 42 0 6 1420 317 314 16 115 chr6 109469849 109470040 -40046997 - MTEb LTR MaLR -157 222 51 6 1420 296 306 85 75 chr6 109469894 109470095 -40046942 - MLT2B3 LTR ERVL -342 212 10 6 1420 2782 48 3 0 chr6 109470232 109470584 -40046453 - L1_Mus1 LINE L1 -191 6376 6024 6 1420 1218 55 0 12 chr6 109470584 109470750 -40046287 + L1_Mus1 LINE L1 6404 6567 0 6 1420 235 252 135 48 chr6 109470762 109470866 -40046171 + B1F SINE Alu 1 113 -36 6 1420 315 293 89 65 chr6 109471042 109471217 -40045820 + MLT2B4 LTR ERVL 90 263 -151 6 1420 3433 205 124 48 chr6 109472263 109473132 -40043905 - RMER19B LTR ERVK 0 902 1 6 1420 500 307 134 29 chr6 109473700 109474109 -40042928 - L1MA4 LINE L1 -426 5874 5423 6 1420 250 328 0 0 chr6 109474130 109474197 -40042840 - ID4 SINE ID -16 67 1 6 1420 307 187 7 44 chr6 109474209 109474343 -40042694 - L1M5 LINE L1 -701 5479 5345 6 1420 215 250 15 59 chr6 109474702 109474770 -40042267 + L2c LINE L2 3287 3351 -36 6 1420 24 32 0 0 chr6 109474912 109474943 -40042094 + AT_rich Low_complexity Low_complexity 1 31 0 6 1420 511 228 257 0 chr6 109475480 109475651 -40041386 - B3 SINE B2 0 216 2 6 1420 621 27 0 0 chr6 109475774 109475849 -40041188 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1420 252 0 0 0 chr6 109475849 109475876 -40041161 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1420 1268 104 5 30 chr6 109476380 109476579 -40040458 - B2_Mm2 SINE B2 0 195 2 6 1420 1348 85 11 0 chr6 109476607 109476784 -40040253 - B2_Mm2 SINE B2 -16 179 1 6 1420 317 24 0 23 chr6 109477632 109477675 -40039362 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1420 817 316 90 34 chr6 109478208 109478562 -40038475 + MTE2a LTR MaLR 1 374 -5 6 1420 1315 41 0 17 chr6 109479057 109479232 -40037805 - L1Md_F2 LINE L1 -2 6580 6409 6 1420 1781 19 0 0 chr6 109479232 109479442 -40037595 + L1Md_F2 LINE L1 6216 6425 -157 6 1420 207 0 0 0 chr6 109479727 109479750 -40037287 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 6 1420 592 302 55 45 chr6 109480320 109480701 -40036336 - L1_Rod LINE L1 -11 5836 5452 6 1420 528 161 25 8 chr6 109480731 109480850 -40036187 + CT-rich Low_complexity Low_complexity 3 123 0 6 1420 798 191 0 0 chr6 109480857 109480988 -40036049 - B1_Mur2 SINE Alu -16 133 3 6 1420 622 312 96 29 chr6 109481661 109482215 -40034822 - L1M2 LINE L1 -917 5226 4636 6 1420 1803 259 7 28 chr6 109482226 109482648 -40034389 - MTC LTR MaLR -8 413 1 6 1420 420 238 0 0 chr6 109482655 109482779 -40034258 - L1M2 LINE L1 -1512 4628 4485 6 1420 183 80 0 0 chr6 109483286 109483311 -40033726 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1420 315 0 0 0 chr6 109483998 109484033 -40033004 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1420 1649 161 11 116 chr6 109484136 109484332 -40032705 + RMER17C LTR ERVK 1 179 -231 7 1420 846 30 0 0 chr6 109484332 109484433 -40032604 + (TTC)n Simple_repeat Simple_repeat 3 103 0 7 1420 1649 161 11 116 chr6 109484433 109484694 -40032343 + RMER17C LTR ERVK 180 409 -1 7 1420 237 301 66 50 chr6 109484916 109485175 -40031862 - L1MA9 LINE L1 -156 6156 5894 7 1420 238 279 15 0 chr6 109485228 109485343 -40031694 - L1MA9 LINE L1 -520 5771 5657 7 1420 1123 179 32 9 chr6 109486115 109486335 -40030702 - URR1B DNA MER1_type 0 225 1 7 1420 29 0 0 0 chr6 109486729 109486758 -40030279 + AT_rich Low_complexity Low_complexity 1 29 0 7 1420 15818 80 13 15 chr6 109487269 109490273 -40026764 - L1Md_F2 LINE L1 -3 6635 3623 7 1420 2627 63 6 17 chr6 109491720 109492076 -40024961 - L1Md_F2 LINE L1 -2 6580 6229 7 1420 2565 98 0 3 chr6 109492226 109492583 -40024454 - L1_Mus4 LINE L1 -7 6629 6274 7 1420 8691 106 31 8 chr6 109493648 109495231 -40021806 - Lx3_Mus LINE L1 0 7009 5391 7 1420 219 114 0 0 chr6 109495249 109495284 -40021753 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 1420 3747 129 33 0 chr6 109495288 109495860 -40021177 - Lx3A LINE L1 -17 6964 6374 7 1420 191 275 0 0 chr6 109496014 109496054 -40020983 - MIRc SINE MIR -142 126 87 7 1420 2083 278 89 8 chr6 109496343 109496533 -40020504 - Lx6 LINE L1 -2 7458 7272 7 1420 2035 147 10 0 chr6 109496533 109496839 -40020198 - RLTR27 LTR ERVK 0 309 1 7 1420 2083 278 89 8 chr6 109496839 109497296 -40019741 - Lx6 LINE L1 -189 7271 6758 7 1420 2301 222 86 34 chr6 109497337 109498260 -40018777 - Lx6 LINE L1 -1066 6394 5411 7 1420 966 224 18 18 chr6 109498253 109498471 -40018566 - Lx6 LINE L1 -184 7276 7059 7 1420 1372 155 19 102 chr6 109498546 109498924 -40018113 - RMER17D2 LTR ERVK 0 889 563 7 1420 1539 85 0 9 chr6 109498924 109499137 -40017900 - L1Md_F2 LINE L1 -12 6570 6360 7 1420 1256 194 24 215 chr6 109499137 109499539 -40017498 - RMER17D2 LTR ERVK -291 598 258 7 1420 3603 41 0 2 chr6 109499540 109500000 -40017037 - L1Md_F2 LINE L1 -12 6570 6112 7 1420 788 59 0 0 chr6 109500000 109500101 -40016936 - L1Md_F2 LINE L1 -471 6111 6011 1 1420 1831 104 4 0 chr6 109500103 109500362 -40016675 - RMER17D2 LTR ERVK -549 260 1 2 1420 477 337 48 53 chr6 109500629 109500817 -40016220 - B3A SINE B2 -10 188 2 3 1420 323 299 129 71 chr6 109501801 109502279 -40014758 - RMER20A LTR ERVK -28 599 30 4 1420 267 104 0 0 chr6 109502730 109502778 -40014259 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 5 1420 494 284 20 0 chr6 109502791 109502893 -40014144 - RSINE1 SINE B4 -22 143 40 6 1420 393 58 0 0 chr6 109502921 109502973 -40014064 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1420 643 265 0 52 chr6 109504681 109504836 -40012201 - MTEa LTR MaLR -185 194 48 8 1420 2334 54 7 0 chr6 109504893 109505188 -40011849 - L1Md_F2 LINE L1 -2 6580 6284 9 1420 1028 198 104 0 chr6 109506414 109506616 -40010421 - URR1A DNA MER1_type -1 225 3 1 1420 4631 88 5 8 chr6 109507282 109507925 -40009112 - L1Md_F2 LINE L1 -11 6571 5931 1 1420 253 286 57 0 chr6 109508029 109508099 -40008938 - MTE2b LTR MaLR -55 324 251 1 1420 22 35 0 0 chr6 109509060 109509089 -40007948 + AT_rich Low_complexity Low_complexity 1 29 0 1 1420 435 19 0 0 chr6 109509661 109509713 -40007324 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1 1420 4128 193 13 73 chr6 109509720 109509936 -40007101 + Lx4B LINE L1 6130 6343 -715 1 1420 413 75 0 0 chr6 109509936 109509989 -40007048 - U4 snRNA snRNA -73 72 20 1 1420 4128 193 13 73 chr6 109509989 109510691 -40006346 + Lx4B LINE L1 6344 7042 -16 1 1420 300 91 0 0 chr6 109510691 109510735 -40006302 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 1 1420 180 0 0 0 chr6 109511207 109511227 -40005810 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1420 471 139 0 0 chr6 109511227 109511328 -40005709 + (GA)n Simple_repeat Simple_repeat 1 101 0 1 1420 302 294 77 24 chr6 109511787 109511996 -40005041 + Charlie1b DNA MER1_type 149 368 -155 2 1420 429 36 0 0 chr6 109512010 109512065 -40004972 + (TTATA)n Simple_repeat Simple_repeat 4 58 0 2 1420 350 329 19 75 chr6 109512203 109512364 -40004673 - RSINE1 SINE B4 0 165 14 2 1420 851 298 60 29 chr6 109512407 109512787 -40004250 + Lx8 LINE L1 7072 7463 -10 2 1420 28 0 0 0 chr6 109514064 109514092 -40002945 + AT_rich Low_complexity Low_complexity 1 28 0 2 1420 216 97 0 0 chr6 109514173 109514204 -40002833 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1420 469 180 0 0 chr6 109514566 109514666 -40002371 - Lx3A LINE L1 -922 6059 5960 2 1420 470 234 56 25 chr6 109514666 109514828 -40002209 - MYSERV6-int LTR ERVK -458 8501 8335 2 1420 1154 167 73 55 chr6 109514831 109514892 -40002145 - MYSERV-int LTR ERVK -780 5770 5720 2 1420 330 87 0 0 chr6 109514892 109514938 -40002099 + (CTATA)n Simple_repeat Simple_repeat 5 50 0 2 1420 1154 167 73 55 chr6 109514938 109515205 -40001832 - MYSERV-int LTR ERVK -831 5719 5436 2 1420 2372 93 68 0 chr6 109515206 109515572 -40001465 - L1_Mus4 LINE L1 -138 6498 6108 3 1420 3384 171 13 2 chr6 109515568 109516196 -40000841 - L1VL4 LINE L1 -5667 635 1 3 1420 623 222 17 12 chr6 109516199 109516372 -40000665 - Lx2 LINE L1 -18 6979 6806 3 1420 21 36 0 0 chr6 109516382 109516410 -40000627 + AT_rich Low_complexity Low_complexity 1 28 0 3 1420 3005 213 38 8 chr6 109516451 109517091 -39999946 - Lx5 LINE L1 -121 6929 6271 3 1420 2059 191 84 45 chr6 109517094 109517631 -39999406 + Lx5 LINE L1 5709 6266 -784 3 1420 912 72 0 0 chr6 109518245 109518383 -39998654 + (TG)n Simple_repeat Simple_repeat 2 139 0 3 1420 599 275 104 40 chr6 109518601 109518851 -39998186 - RLTR15 LTR ERVK -73 286 21 3 1420 1683 302 77 3 chr6 109518864 109519524 -39997513 - Lx9 LINE L1 -617 7027 6319 3 1420 22 0 0 0 chr6 109521773 109521795 -39995242 + AT_rich Low_complexity Low_complexity 1 22 0 3 1420 420 71 0 0 chr6 109522542 109522598 -39994439 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1420 279 364 66 9 chr6 109522640 109522851 -39994186 + MLT1C LTR MaLR 2 224 -243 4 1420 330 26 0 0 chr6 109523927 109523966 -39993071 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 4 1420 1808 10 0 0 chr6 109523968 109524175 -39992862 - L1Md_A LINE L1 -1 6581 6375 4 1420 1124 102 0 0 chr6 109524175 109524322 -39992715 - B1_Mus2 SINE Alu 0 147 1 4 1420 198 71 0 0 chr6 109524336 109524364 -39992673 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1420 33983 73 4 7 chr6 109524404 109530583 -39986454 - L1Md_F2 LINE L1 -3 6579 422 4 1420 5123 45 0 0 chr6 109530590 109531210 -39985827 - L1Md_F3 LINE L1 -16 6568 5949 4 1420 233 237 0 17 chr6 109531220 109531280 -39985757 + MLT1C LTR MaLR 350 408 0 4 1420 369 0 0 0 chr6 109532041 109532082 -39984955 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1420 2934 228 41 16 chr6 109532090 109532818 -39984219 - Lx2B LINE L1 -34 6966 6221 4 1420 23 33 0 0 chr6 109533191 109533221 -39983816 + AT_rich Low_complexity Low_complexity 1 30 0 4 1420 189 94 0 0 chr6 109533505 109533537 -39983500 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1420 2138 204 32 154 chr6 109534239 109534933 -39982104 - RMER19C LTR ERVK -2 609 1 5 1420 396 323 38 8 chr6 109534934 109535171 -39981866 + Lx9 LINE L1 7225 7468 -176 5 1420 25 65 0 0 chr6 109535245 109535291 -39981746 + AT_rich Low_complexity Low_complexity 1 46 0 5 1420 36528 50 1 3 chr6 109535415 109542566 -39974471 - L1Md_T LINE L1 0 6585 1 5 1420 375 23 0 0 chr6 109542799 109542843 -39974194 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1420 249 33 0 0 chr6 109542843 109542872 -39974165 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1420 501 286 82 68 chr6 109542948 109543154 -39973883 - B4 SINE B4 -72 220 12 5 1420 186 315 53 27 chr6 109543375 109543450 -39973587 + L4 LINE RTE 675 751 -1278 5 1420 429 115 0 0 chr6 109543851 109543929 -39973108 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1420 249 417 53 7 chr6 109543930 109544082 -39972955 - RSINE1 SINE B4 -4 161 3 6 1420 972 291 39 21 chr6 109544176 109544441 -39972596 + B4 SINE B4 7 279 -13 6 1420 396 59 0 0 chr6 109544441 109544492 -39972545 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1420 972 291 39 21 chr6 109544492 109544507 -39972530 + B4 SINE B4 280 292 0 6 1420 305 319 43 21 chr6 109544574 109544643 -39972394 - RSINE1 SINE B4 -6 159 87 6 1420 384 111 0 0 chr6 109544643 109544706 -39972331 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1420 305 319 43 21 chr6 109544706 109544729 -39972308 - RSINE1 SINE B4 -79 86 65 6 1420 401 285 32 71 chr6 109544814 109544969 -39972068 + B4A SINE B4 144 292 0 6 1420 969 270 79 55 chr6 109544988 109545533 -39971504 - Charlie1a DNA MER1_type -110 1345 788 6 1420 458 314 83 0 chr6 109545532 109545701 -39971336 - MER31A LTR ERV1 -92 393 211 6 1420 260 304 113 26 chr6 109545746 109545861 -39971176 - MER31A LTR ERV1 -341 125 1 6 1420 1559 164 4 0 chr6 109545864 109546144 -39970893 - Lx LINE L1 0 6654 6374 6 1420 675 289 265 18 chr6 109546187 109546738 -39970299 - Charlie1a DNA MER1_type -739 716 30 6 1420 34 65 0 0 chr6 109546767 109546829 -39970208 + AT_rich Low_complexity Low_complexity 1 62 0 6 1420 4673 240 83 14 chr6 109547118 109548378 -39968659 - Lx6 LINE L1 -8 7452 6106 7 1420 743 32 11 0 chr6 109548906 109549000 -39968037 + (GA)n Simple_repeat Simple_repeat 2 96 0 7 1420 5117 37 13 0 chr6 109549387 109550009 -39967028 - L1Md_F2 LINE L1 -2 6580 5951 7 1420 403 352 21 8 chr6 109550369 109550607 -39966430 + L1ME4a LINE L1 5596 5836 -288 7 1420 1813 328 56 29 chr6 109552368 109552721 -39964316 + Lx8 LINE L1 6398 6749 -724 7 1420 324 0 0 0 chr6 109552721 109552757 -39964280 + (CTA)n Simple_repeat Simple_repeat 3 38 0 7 1420 1813 328 56 29 chr6 109552757 109553300 -39963737 + Lx8 LINE L1 6750 7318 -155 7 1420 249 281 18 0 chr6 109553642 109553699 -39963338 + B4A SINE B4 2 59 -233 7 1420 484 291 45 78 chr6 109553722 109553838 -39963199 + B4A SINE B4 108 214 -78 7 1420 416 51 0 17 chr6 109553838 109553898 -39963139 + (TAAA)n Simple_repeat Simple_repeat 4 62 0 7 1420 484 291 45 78 chr6 109553898 109553960 -39963077 + B4A SINE B4 215 280 -12 7 1420 333 0 0 0 chr6 109553994 109554031 -39963006 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1420 4574 152 20 12 chr6 109554811 109555576 -39961461 + RMER12 LTR ERVK 11 782 -540 7 1420 369 0 0 0 chr6 109555576 109555617 -39961420 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1420 4574 152 20 12 chr6 109555617 109555682 -39961355 + RMER12 LTR ERVK 783 847 -475 7 1420 291 292 14 0 chr6 109555682 109555754 -39961283 + RMER12 LTR ERVK 1250 1322 0 8 1420 501 17 0 0 chr6 109556294 109556352 -39960685 + (TC)n Simple_repeat Simple_repeat 1 58 0 8 1420 441 0 0 0 chr6 109556353 109556402 -39960635 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1420 9205 188 77 5 chr6 109557324 109560298 -39956739 - Lx5 LINE L1 0 7050 3847 8 1420 15871 182 36 41 chr6 109560292 109564853 -39952184 - L1Md_F2 LINE L1 0 6582 2057 8 1420 342 0 0 0 chr6 109564853 109564891 -39952146 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1420 15871 197 120 37 chr6 109564891 109565903 -39951134 - L1Md_F2 LINE L1 -3821 2056 938 8 1420 3235 31 5 0 chr6 109565903 109566290 -39950747 - L1Md_F2 LINE L1 0 6582 6194 8 1420 1148 248 123 11 chr6 109566290 109566363 -39950674 - L1Md_F2 LINE L1 -5680 958 885 8 1420 315 0 0 0 chr6 109567022 109567057 -39949980 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1420 367 244 40 28 chr6 109567102 109567279 -39949758 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1420 1228 84 105 29 chr6 109568005 109568214 -39948823 - L1_Mus1 LINE L1 -1 6566 6342 8 1420 306 390 17 68 chr6 109568391 109568567 -39948470 + B4A SINE B4 2 168 -124 9 1420 219 178 0 0 chr6 109568732 109568746 -39948291 + A-rich Low_complexity Low_complexity 1 14 0 9 1420 1119 88 0 0 chr6 109568746 109568893 -39948144 + B1_Mus2 SINE Alu 1 147 0 9 1420 219 178 0 0 chr6 109568893 109568923 -39948114 + A-rich Low_complexity Low_complexity 15 44 0 9 1420 368 303 70 55 chr6 109569385 109569584 -39947453 - L1MEf LINE L1 -5485 715 514 9 1420 1937 218 62 75 chr6 109569700 109570055 -39946982 - RLTR31_Mur LTR ERVK 0 553 208 9 1420 4064 54 0 0 chr6 109570055 109570558 -39946479 + L1Md_F2 LINE L1 6068 6570 -12 9 1420 1937 218 62 75 chr6 109570558 109570762 -39946275 - RLTR31_Mur LTR ERVK -346 207 1 9 1420 561 30 0 0 chr6 109570780 109570847 -39946190 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1420 446 0 19 0 chr6 109571244 109571298 -39945739 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 9 1420 1166 69 0 0 chr6 109571298 109571442 -39945595 - B1_Mus2 SINE Alu -3 144 1 9 1420 539 284 158 5 chr6 109572223 109572432 -39944605 - MIRb SINE MIR -14 254 14 1 1420 667 334 75 33 chr6 109572558 109572889 -39944148 + LTR16D1 LTR ERVL 241 585 -90 1 1420 201 301 71 12 chr6 109573072 109573156 -39943881 - MIR SINE MIR -62 200 112 1 1420 259 226 112 56 chr6 109574383 109574472 -39942565 - B3 SINE B2 -94 122 29 1 1420 638 191 38 151 chr6 109574459 109574644 -39942393 + ORR1D1 LTR MaLR 208 371 -3 1 1420 539 324 18 69 chr6 109574984 109575319 -39941718 - L1M2 LINE L1 -540 5757 5440 1 177 900 297 75 55 chr6 109575513 109576357 -39940680 - L1MD2 LINE L1 -270 6089 5222 1 1421 204 97 0 0 chr6 109576484 109576515 -39940522 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1421 349 297 135 40 chr6 109576669 109576943 -39940094 - L1MD2 LINE L1 -3877 2289 1990 1 1421 614 277 104 30 chr6 109576967 109577168 -39939869 - B3 SINE B2 0 216 1 1 1421 480 387 0 23 chr6 109577709 109577725 -39939312 - B3A SINE B2 -30 168 153 1 1421 500 0 17 0 chr6 109577725 109577785 -39939252 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1421 486 33 0 0 chr6 109577785 109577844 -39939193 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1421 480 387 0 23 chr6 109577844 109577998 -39939039 - B3A SINE B2 -46 152 2 1 1421 21 36 0 0 chr6 109578449 109578477 -39938560 + AT_rich Low_complexity Low_complexity 1 28 0 1 1421 396 55 0 0 chr6 109578997 109579052 -39937985 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1421 222 128 0 0 chr6 109579055 109579094 -39937943 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1421 257 371 24 24 chr6 109579253 109579380 -39937657 - B4A SINE B4 -165 127 1 1 1421 309 191 28 75 chr6 109579401 109579514 -39937523 + L1M5 LINE L1 5706 5815 -359 1 1421 273 272 12 47 chr6 109580599 109580684 -39936353 + L2b LINE L2 3289 3370 -5 1 1421 27 49 0 0 chr6 109580746 109580787 -39936250 + AT_rich Low_complexity Low_complexity 1 41 0 1 1421 315 105 0 0 chr6 109584094 109584151 -39932886 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1421 243 253 30 178 chr6 109584480 109584581 -39932456 - MER2 DNA MER2_type -3 342 257 1 1421 2200 159 8 5 chr6 109584646 109585026 -39932011 - Lx2B LINE L1 -697 5180 4800 1 1421 6386 191 26 20 chr6 109585026 109586768 -39930269 + Lx2B LINE L1 5237 7000 0 1 1421 222 219 0 0 chr6 109587267 109587308 -39929729 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 1 1421 208 388 122 7 chr6 109588570 109589059 -39927978 + L2a LINE L2 2548 3098 -328 1 1421 391 294 45 111 chr6 109589276 109589299 -39927738 - B2_Mm2 SINE B2 -9 186 163 1 1421 333 68 0 0 chr6 109589299 109589343 -39927694 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1421 646 294 45 111 chr6 109589343 109589518 -39927519 - B3A SINE B2 -30 168 1 1 1421 261 280 124 48 chr6 109589524 109589629 -39927408 - ID_B1 SINE B4 -7 217 105 1 1421 696 318 47 69 chr6 109589815 109590092 -39926945 + B4A SINE B4 1 271 -21 1 1421 327 85 0 0 chr6 109590185 109590232 -39926805 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1421 571 350 82 22 chr6 109590314 109590545 -39926492 - B4A SINE B4 -44 248 4 1 1421 22 0 0 0 chr6 109590855 109590877 -39926160 + AT_rich Low_complexity Low_complexity 1 22 0 1 1421 261 0 0 0 chr6 109590973 109591002 -39926035 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 1 1421 599 329 62 58 chr6 109591013 109591304 -39925733 - B4A SINE B4 0 292 1 1 1421 458 274 44 72 chr6 109591327 109591508 -39925529 + MER20 DNA MER1_type 44 219 0 1 1421 38308 6 0 0 chr6 109591743 109597115 -39919922 + L1Md_A LINE L1 214 5586 -297 1 1421 8983 2 0 1 chr6 109597115 109598112 -39918925 + L1Md_A LINE L1 5587 6582 0 1 1421 784 29 19 0 chr6 109598176 109598279 -39918758 + (TC)n Simple_repeat Simple_repeat 2 106 0 1 1421 328 345 47 18 chr6 109598654 109598825 -39918212 + MER5B DNA MER1_type 3 178 0 1 1421 392 247 11 33 chr6 109598995 109599087 -39917950 + PB1D10 SINE Alu 12 101 -16 1 1421 1211 245 42 113 chr6 109600183 109600565 -39916472 - MTE2a LTR MaLR -16 363 9 1 1421 324 362 71 19 chr6 109600672 109600827 -39916210 + MER5A DNA MER1_type 24 186 -3 1 1421 231 61 0 0 chr6 109601094 109601127 -39915910 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1421 2716 301 43 59 chr6 109601135 109601580 -39915457 - Lx9 LINE L1 -204 7440 7031 1 1421 387 0 0 0 chr6 109601580 109601623 -39915414 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1421 2716 302 44 58 chr6 109601623 109602289 -39914748 - Lx9 LINE L1 -614 7030 6201 1 1421 453 19 0 0 chr6 109602289 109602343 -39914694 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1421 1889 333 73 49 chr6 109602343 109602818 -39914219 - Lx9 LINE L1 -1273 6200 5699 1 1421 2455 229 14 116 chr6 109602818 109603516 -39913521 - RMER20B LTR ERVK 0 627 1 1 1421 207 0 0 0 chr6 109604782 109604805 -39912232 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1421 467 340 67 24 chr6 109605028 109605446 -39911591 - MLT2B4 LTR ERVL -59 497 1 1 1421 506 275 107 20 chr6 109606255 109606452 -39910585 - B3 SINE B2 0 216 3 1 1421 29 47 0 0 chr6 109606668 109606711 -39910326 + AT_rich Low_complexity Low_complexity 1 43 0 1 1421 516 93 0 0 chr6 109607111 109607186 -39909851 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1421 430 348 80 49 chr6 109607286 109607612 -39909425 - MT2A LTR ERVL -98 435 100 1 1421 285 303 139 68 chr6 109607459 109607696 -39909341 - MTE2a LTR MaLR -121 258 5 1 1421 30 59 0 0 chr6 109608455 109608506 -39908531 + AT_rich Low_complexity Low_complexity 1 51 0 1 1421 584 270 0 8 chr6 109609907 109610034 -39907003 - B1_Mur1 SINE Alu -13 136 11 1 1421 261 308 38 91 chr6 109609921 109610053 -39906984 - MT2B LTR ERVL -323 278 154 1 1421 331 337 104 0 chr6 109610187 109610389 -39906648 + ID_B1 SINE B4 2 224 0 1 1421 204 337 0 20 chr6 109611711 109611811 -39905226 + CT-rich Low_complexity Low_complexity 1 98 0 1 1421 1295 202 73 73 chr6 109612662 109613003 -39904034 + Lx9 LINE L1 6799 7139 -505 1 1421 1000 50 0 0 chr6 109613003 109613124 -39903913 + L1Md_F2 LINE L1 5464 5584 -299 1 1421 8047 37 7 0 chr6 109613127 109614124 -39902913 + L1Md_F2 LINE L1 5588 6582 0 1 1421 1617 219 29 87 chr6 109614124 109614504 -39902533 + Lx9 LINE L1 7148 7498 -146 1 1421 423 38 0 0 chr6 109614504 109614557 -39902480 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1 1421 1617 219 29 87 chr6 109614557 109614696 -39902341 + Lx9 LINE L1 7499 7637 -7 1 1421 1464 206 128 24 chr6 109615873 109616247 -39900790 + MTC LTR MaLR 1 413 -8 1 1421 182 260 127 25 chr6 109616305 109616384 -39900653 - MIR SINE MIR -6 256 170 1 1421 237 376 12 12 chr6 109616514 109616600 -39900437 - MTEa LTR MaLR -5 374 289 1 1421 370 356 85 0 chr6 109616692 109616810 -39900227 - RSINE1 SINE B4 -11 154 27 1 1421 2105 33 50 21 chr6 109616974 109617255 -39899782 - L1Md_F3 LINE L1 -14 6570 6282 1 1421 554 16 0 0 chr6 109617255 109617318 -39899719 + L1Md_F3 LINE L1 6230 6292 -292 1 1421 282 337 57 40 chr6 109617419 109617619 -39899418 - MIR SINE MIR -55 213 12 1 1421 180 292 81 27 chr6 109617708 109617782 -39899255 - MIR SINE MIR -3 259 182 1 1421 463 260 39 0 chr6 109617982 109618109 -39898928 - Lx9 LINE L1 -980 6664 6533 1 1421 282 298 0 0 chr6 109618118 109618212 -39898825 - Lx9 LINE L1 -1235 6409 6316 1 1421 225 0 0 0 chr6 109619187 109619212 -39897825 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1421 3323 144 16 12 chr6 109619370 109620064 -39896973 - L1_Mur2 LINE L1 -1655 4231 3492 1 1421 351 0 0 0 chr6 109620067 109620106 -39896931 + (ATG)n Simple_repeat Simple_repeat 1 39 0 1 1421 3012 173 26 6 chr6 109620110 109620638 -39896399 + Lx4A LINE L1 5931 6469 -589 1 1421 521 160 0 36 chr6 109620635 109620745 -39896292 + Lx4A LINE L1 6942 7047 -11 1 1421 26 0 0 0 chr6 109620758 109620784 -39896253 + AT_rich Low_complexity Low_complexity 1 26 0 1 1421 332 283 22 0 chr6 109620979 109621071 -39895966 + MLT1A1 LTR MaLR 11 104 -261 1 1421 354 226 27 54 chr6 109621084 109621196 -39895841 + MLT1A1 LTR MaLR 250 358 -50 1 1421 1146 302 25 71 chr6 109621348 109621743 -39895294 + MTE2b LTR MaLR 1 377 -2 1 1421 248 293 30 10 chr6 109622349 109622449 -39894588 + GA-rich Low_complexity Low_complexity 2 103 0 1 1421 313 292 113 0 chr6 109623044 109623150 -39893887 - MER5B DNA MER1_type 0 178 61 1 1421 668 89 10 0 chr6 109623168 109623269 -39893768 + (TAGA)n Simple_repeat Simple_repeat 3 104 0 1 1421 504 0 0 0 chr6 109623324 109623380 -39893657 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1421 284 314 33 8 chr6 109623501 109623623 -39893414 + MER117 DNA MER1_type 1 125 -72 1 1421 601 209 21 56 chr6 109623753 109623895 -39893142 - B1_Mur4 SINE Alu -11 139 3 1 1421 606 271 0 0 chr6 109623955 109624084 -39892953 - B3 SINE B2 -87 129 1 1 1421 21 71 0 0 chr6 109624089 109624131 -39892906 + AT_rich Low_complexity Low_complexity 1 42 0 1 1421 5042 103 1 1 chr6 109624136 109625108 -39891929 - L1_Mus4 LINE L1 -382 6254 5283 1 1421 2168 130 3 53 chr6 109625108 109625483 -39891554 + L1_Mus4 LINE L1 6277 6632 -4 1 1421 558 364 45 12 chr6 109625630 109625966 -39891071 - Lx8 LINE L1 -199 7274 6928 1 1421 1907 191 139 27 chr6 109625972 109625998 -39891039 + RLTR24 LTR ERV1 1 26 -503 1 1421 386 113 0 0 chr6 109625998 109626060 -39890977 + L1_Mus2 LINE L1 6505 6566 0 1 1421 1907 191 139 27 chr6 109626060 109626236 -39890801 + RLTR24 LTR ERV1 27 206 -323 1 1421 3606 187 45 3 chr6 109626236 109626900 -39890137 - RLTR17 LTR ERVK 0 692 1 1 1421 1907 191 139 27 chr6 109626900 109627170 -39889867 + RLTR24 LTR ERV1 207 526 -3 1 1421 30 27 0 0 chr6 109628215 109628252 -39888785 + AT_rich Low_complexity Low_complexity 1 37 0 1 1421 302 302 98 39 chr6 109628321 109628524 -39888513 - B3 SINE B2 -1 215 1 1 1421 25 31 0 0 chr6 109630533 109630565 -39886472 + AT_rich Low_complexity Low_complexity 1 32 0 1 1421 614 308 14 5 chr6 109630565 109630774 -39886263 - B3 SINE B2 -5 211 1 1 1421 830 316 40 6 chr6 109631334 109631656 -39885381 + Lx8 LINE L1 7136 7468 -5 1 1421 402 231 38 5 chr6 109632502 109632613 -39884424 - B1_Mur4 SINE Alu 0 120 6 1 1421 392 328 71 28 chr6 109634343 109634525 -39882512 + MER20 DNA MER1_type 30 219 0 1 1421 655 298 52 37 chr6 109635581 109635853 -39881184 - B4A SINE B4 -12 280 5 1 1421 284 261 152 11 chr6 109636748 109636926 -39880111 - L1MDa LINE L1 -2989 3548 3346 1 1421 233 342 55 0 chr6 109636927 109637000 -39880037 + B4 SINE B4 3 79 -213 1 1421 219 88 0 0 chr6 109637005 109637039 -39879998 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1421 1626 265 55 114 chr6 109637116 109637973 -39879064 + RLTR40 LTR ERVK 8 813 -4 1 1421 368 272 0 52 chr6 109637993 109638090 -39878947 + B4 SINE B4 199 290 -2 1 1421 300 346 0 38 chr6 109638209 109638314 -39878723 - PB1D10 SINE Alu -7 110 10 2 1421 819 265 41 10 chr6 109638348 109638638 -39878399 - L1MDa LINE L1 -3279 3258 2960 1 1421 591 346 95 4 chr6 109638854 109639086 -39877951 - B4 SINE B4 -9 283 31 2 1421 817 154 0 14 chr6 109640385 109640530 -39876507 - RMER19B LTR ERVK -4 898 756 2 1421 1541 75 62 8 chr6 109640531 109640680 -39876357 - L1_Mur1 LINE L1 -487 5399 5252 2 1421 432 0 0 0 chr6 109640680 109640728 -39876309 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1421 1541 75 62 8 chr6 109640728 109640820 -39876217 - L1_Mur1 LINE L1 -635 5251 5145 2 1421 8551 108 18 26 chr6 109640818 109642211 -39874826 + Lx3A LINE L1 5528 6907 -74 2 1421 1662 248 51 112 chr6 109642211 109642780 -39874257 - RMER19C LTR ERVK -77 534 1 2 1421 322 273 54 12 chr6 109642786 109642953 -39874084 - L1MDa LINE L1 -5173 1367 1194 1 1421 732 248 0 0 chr6 109643014 109643151 -39873886 - B1_Mur2 SINE Alu -12 137 1 2 1421 259 357 138 21 chr6 109643484 109643673 -39873364 - L1MDa LINE L1 -5802 831 621 1 1421 395 270 0 9 chr6 109643861 109643973 -39873064 - L1MDa LINE L1 -6498 135 25 1 1421 829 310 76 9 chr6 109644662 109644991 -39872046 + Tigger5 DNA MER2_type 2024 2374 -32 2 1421 565 314 0 0 chr6 109645034 109645193 -39871844 + RSINE1 SINE B4 1 159 -6 2 1421 215 280 0 0 chr6 109645203 109645253 -39871784 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1421 370 281 88 52 chr6 109645270 109645634 -39871403 - L1M5 LINE L1 -2979 3167 2791 2 1421 1033 172 0 10 chr6 109645677 109645871 -39871166 + ORR1C2-int LTR MaLR 1315 1506 -3 2 1421 1219 241 97 31 chr6 109645874 109646234 -39870803 + ORR1C2 LTR MaLR 1 384 0 2 1421 283 260 0 16 chr6 109646959 109647033 -39870004 - ID4 SINE ID -14 69 1 2 1421 451 78 26 0 chr6 109647317 109647394 -39869643 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 1421 677 319 65 47 chr6 109647964 109648240 -39868797 + B4A SINE B4 1 281 -11 2 1421 1291 260 98 13 chr6 109648648 109649034 -39868003 + MTD LTR MaLR 1 419 0 2 1421 1136 236 24 31 chr6 109649039 109649332 -39867705 + MTD-int LTR MaLR 6 296 -962 2 1421 972 281 75 8 chr6 109649404 109649669 -39867368 - RMER15 LTR ERVL 0 575 293 2 1421 401 281 45 64 chr6 109649940 109650252 -39866785 - L1MEg LINE L1 -4574 1510 1205 2 1421 460 312 90 55 chr6 109650254 109650454 -39866583 + MER58A DNA MER1_type 9 215 -9 2 1421 1190 266 94 26 chr6 109650455 109650914 -39866123 + Lx7 LINE L1 6754 7243 -453 2 1421 570 315 49 0 chr6 109650930 109651133 -39865904 - B3 SINE B2 -2 214 2 2 1421 2033 274 55 40 chr6 109651686 109652715 -39864322 + RMER1A Other Other 5 741 -289 2 1421 288 89 0 0 chr6 109652712 109652757 -39864280 + L1_Mus3 LINE L1 6096 6140 -498 2 1421 3623 83 42 1 chr6 109652737 109653239 -39863798 - L1_Mus3 LINE L1 -555 6453 5588 2 1421 6890 141 9 51 chr6 109653249 109654470 -39862567 + L1_Mm LINE L1 4464 5633 -250 2 1421 1255 139 0 0 chr6 109654471 109654665 -39862372 - Lx3_Mus LINE L1 -420 6589 6396 2 1421 404 100 114 0 chr6 109654664 109654734 -39862303 - Lx3_Mus LINE L1 -1133 5876 5799 2 1421 6219 116 11 70 chr6 109654723 109656264 -39860773 + L1_Mur1 LINE L1 4558 5883 0 2 1421 2922 27 0 0 chr6 109656284 109656621 -39860416 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1421 55375 25 13 6 chr6 109656621 109663053 -39853984 - IAPEz-int LTR ERVK 0 6481 8 2 1421 2922 27 0 0 chr6 109663053 109663390 -39853647 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1421 5108 64 22 1 chr6 109663390 109664061 -39852976 + L1Md_F2 LINE L1 5898 6582 0 2 1421 2488 130 0 0 chr6 109664072 109664433 -39852604 + L1_Mur1 LINE L1 5488 5848 -38 2 1421 359 196 69 0 chr6 109664442 109664544 -39852493 - Lx3A LINE L1 -2 6979 6871 2 1421 493 333 17 47 chr6 109665860 109665968 -39851069 + Lx8 LINE L1 7006 7112 -361 2 1421 2562 121 39 58 chr6 109665968 109666452 -39850585 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1421 493 333 17 47 chr6 109666452 109666576 -39850461 + Lx8 LINE L1 7113 7231 -242 2 1421 486 0 0 0 chr6 109666839 109666893 -39850144 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1421 359 149 14 0 chr6 109667580 109667654 -39849383 + (TA)n Simple_repeat Simple_repeat 2 76 0 2 1421 21 71 0 0 chr6 109667781 109667823 -39849214 + AT_rich Low_complexity Low_complexity 1 42 0 2 1421 246 62 0 0 chr6 109667954 109667986 -39849051 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1421 291 132 44 0 chr6 109667995 109668063 -39848974 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 1421 533 330 32 16 chr6 109668125 109668151 -39848886 - B3A SINE B2 -7 191 164 2 1421 444 19 0 0 chr6 109668151 109668204 -39848833 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1421 533 330 32 16 chr6 109668204 109668365 -39848672 - B3A SINE B2 -35 163 1 2 1421 309 151 0 0 chr6 109668569 109668622 -39848415 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 2 1421 889 240 24 19 chr6 109668721 109668933 -39848104 + B3 SINE B2 4 216 0 2 1421 412 68 27 0 chr6 109669095 109669168 -39847869 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1421 488 315 53 41 chr6 109669283 109669452 -39847585 - Tigger5 DNA MER2_type -2189 217 47 2 1421 264 302 177 14 chr6 109670130 109670271 -39846766 - L3 LINE CR1 -66 4423 4260 2 1421 1862 141 29 41 chr6 109670531 109670872 -39846165 - Lx3A LINE L1 -10 6971 6635 2 1421 866 280 57 65 chr6 109670873 109671240 -39845797 + MTE2a LTR MaLR 13 376 -3 2 1421 186 362 30 15 chr6 109671785 109671917 -39845120 - MIRb SINE MIR -27 241 108 2 1421 24 32 0 0 chr6 109672016 109672047 -39844990 + AT_rich Low_complexity Low_complexity 1 31 0 2 1421 681 282 56 15 chr6 109672668 109672866 -39844171 - B3 SINE B2 -2 214 9 2 1421 663 349 25 14 chr6 109672986 109673265 -39843772 - MER97c DNA MER1_type? -501 589 308 2 1421 421 293 102 0 chr6 109673552 109673683 -39843354 + B3A SINE B2 1 148 -50 2 1421 653 24 12 0 chr6 109673683 109673766 -39843271 + (TC)n Simple_repeat Simple_repeat 1 84 0 2 1421 421 293 102 0 chr6 109673766 109673801 -39843236 + B3A SINE B2 149 183 -15 2 1421 252 71 24 0 chr6 109673803 109673845 -39843192 - Lx9 LINE L1 -85 7559 7517 2 1421 450 0 0 0 chr6 109673847 109673897 -39843140 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1421 746 288 0 5 chr6 109674066 109674279 -39842758 - B3 SINE B2 -3 213 2 2 1421 323 61 0 39 chr6 109674734 109674785 -39842252 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 2 1421 269 356 67 7 chr6 109675179 109675329 -39841708 - L1ME3 LINE L1 -88 6074 5916 2 1421 384 268 0 44 chr6 109675373 109675463 -39841574 - B3A SINE B2 -112 86 1 2 1421 244 332 72 17 chr6 109675660 109675951 -39841086 - L1ME3 LINE L1 -508 5656 5350 2 1421 2221 295 66 45 chr6 109675988 109676658 -39840379 - Lx8 LINE L1 -64 7409 6713 2 1421 357 276 189 22 chr6 109676658 109676843 -39840194 - B3 SINE B2 0 216 1 2 1421 2221 295 66 45 chr6 109676843 109677038 -39839999 - Lx8 LINE L1 -761 6712 6526 2 1421 595 286 124 29 chr6 109677015 109677361 -39839676 - L1_Mur3 LINE L1 -3323 2557 2179 2 1421 703 103 16 8 chr6 109677677 109677804 -39839233 + L1_Mus3 LINE L1 6507 6634 -4 2 1421 363 318 95 38 chr6 109677804 109678436 -39838601 - L1_Mur3 LINE L1 -3633 2214 1539 2 1421 23 0 0 0 chr6 109679499 109679522 -39837515 + AT_rich Low_complexity Low_complexity 1 23 0 2 1421 368 299 93 9 chr6 109679941 109680167 -39836870 - L1ME3 LINE L1 -1498 4648 4404 2 1421 21 36 0 0 chr6 109680484 109680512 -39836525 + AT_rich Low_complexity Low_complexity 1 28 0 2 1421 666 278 46 11 chr6 109680670 109680845 -39836192 - B3A SINE B2 -16 182 2 2 1421 180 0 0 0 chr6 109680861 109680881 -39836156 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1421 1874 206 71 7 chr6 109680968 109681389 -39835648 - Lx7 LINE L1 -484 7212 6765 2 1421 7579 111 170 8 chr6 109681415 109683666 -39833371 - L1Md_F2 LINE L1 -13 6569 3828 2 1421 23 0 0 0 chr6 109683822 109683845 -39833192 + AT_rich Low_complexity Low_complexity 1 23 0 2 1421 5319 132 33 14 chr6 109683846 109684716 -39832321 - Lx3A LINE L1 -2 6979 6093 2 1421 536 250 78 23 chr6 109684803 109685034 -39832003 - L1MA4A LINE L1 -1592 5881 5657 2 1421 464 286 20 67 chr6 109685298 109685314 -39831723 - B1F1 SINE Alu 0 149 135 2 1421 378 0 0 0 chr6 109685314 109685356 -39831681 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1421 464 286 20 67 chr6 109685356 109685489 -39831548 - B1F1 SINE Alu -15 134 7 2 1421 322 290 20 115 chr6 109685489 109685504 -39831533 - ID_B1 SINE B4 -15 209 76 2 1421 592 309 44 22 chr6 109686945 109687090 -39829947 + B3 SINE B2 1 152 -64 2 1421 381 22 0 0 chr6 109687090 109687136 -39829901 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1421 592 309 44 22 chr6 109687136 109687172 -39829865 + B3 SINE B2 153 186 -30 2 1421 813 107 0 0 chr6 109687186 109687308 -39829729 + (TA)n Simple_repeat Simple_repeat 1 122 0 2 1421 200 149 21 0 chr6 109687842 109687889 -39829148 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1421 24 0 0 0 chr6 109688362 109688386 -39828651 + AT_rich Low_complexity Low_complexity 1 24 0 2 1421 25 0 0 0 chr6 109688633 109688658 -39828379 + AT_rich Low_complexity Low_complexity 1 25 0 2 1421 690 305 126 47 chr6 109689860 109690201 -39826836 + MTE2b LTR MaLR 1 368 -11 2 1421 3462 82 0 2 chr6 109691006 109691472 -39825565 + L1Md_F2 LINE L1 6106 6570 -12 2 1421 330 26 0 0 chr6 109691747 109691786 -39825251 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1421 28 61 0 0 chr6 109692908 109692957 -39824080 + AT_rich Low_complexity Low_complexity 1 49 0 2 1421 1088 145 14 5 chr6 109692998 109693206 -39823831 - Lx LINE L1 0 6654 6445 2 1421 2043 242 83 18 chr6 109693320 109693825 -39823212 - Lx6 LINE L1 -11 7449 6912 2 1421 625 306 108 29 chr6 109694140 109694685 -39822352 - L1M3 LINE L1 -1718 4422 3835 2 1421 233 256 117 111 chr6 109694688 109694868 -39822169 - Tigger1 DNA MER2_type -1103 1315 1135 2 1421 24 0 0 0 chr6 109694994 109695018 -39822019 + AT_rich Low_complexity Low_complexity 1 24 0 2 1421 296 274 99 71 chr6 109695184 109695396 -39821641 - L1M3 LINE L1 -3029 3111 2894 2 1421 332 248 92 67 chr6 109696357 109696521 -39820516 + MLT1A1 LTR MaLR 239 406 -2 2 1421 37 0 0 0 chr6 109696746 109696783 -39820254 + AT_rich Low_complexity Low_complexity 1 37 0 2 1421 645 337 123 8 chr6 109697740 109697991 -39819046 + B4 SINE B4 9 288 -4 2 1421 3490 247 58 29 chr6 109698671 109699749 -39817288 + L1_Rod LINE L1 4579 5687 -160 2 1421 453 254 36 0 chr6 109699780 109699890 -39817147 - RLTR40 LTR ERVK -45 772 659 2 1421 1806 258 81 18 chr6 109700118 109700773 -39816264 + L1MC1 LINE L1 5460 6155 -178 2 1421 594 319 32 8 chr6 109700775 109701025 -39816012 + L1MC1 LINE L1 6056 6311 -22 2 1421 472 268 110 27 chr6 109702053 109702199 -39814838 + RSINE1 SINE B4 4 161 -4 2 1421 291 104 0 0 chr6 109702199 109702247 -39814790 + (TCTCCC)n Simple_repeat Simple_repeat 1 48 0 2 1421 534 75 0 0 chr6 109702249 109702329 -39814708 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 1421 210 171 0 0 chr6 109702490 109702531 -39814506 + CT-rich Low_complexity Low_complexity 2 42 0 3 1421 703 57 0 0 chr6 109702671 109702776 -39814261 + L1_Mus3 LINE L1 6533 6637 -1 3 1421 252 384 70 18 chr6 109703704 109703818 -39813219 + MLT1G1 LTR MaLR 337 456 -123 3 1421 612 266 0 53 chr6 109704456 109704607 -39812430 - RSINE1 SINE B4 -21 144 2 3 1421 263 236 0 73 chr6 109706198 109706294 -39810743 + CT-rich Low_complexity Low_complexity 2 90 0 3 1421 2358 193 116 76 chr6 109706296 109706863 -39810174 + RMER19A LTR ERVK 1 590 -147 3 177 2367 154 57 61 chr6 109706987 109707492 -39809545 + RLTR1C LTR ERV1 1 503 0 3 1422 308 96 0 0 chr6 109707546 109707598 -39809439 + L1_Mus4 LINE L1 6577 6628 -8 3 1422 581 254 71 60 chr6 109707599 109707783 -39809254 + ORR1D1 LTR MaLR 144 329 -45 3 1422 342 115 0 0 chr6 109707795 109707847 -39809190 + (GGA)n Simple_repeat Simple_repeat 3 54 0 3 1422 6718 162 44 2 chr6 109707870 109708990 -39808047 - L1_Mm LINE L1 -74 5809 4641 3 1422 294 50 0 0 chr6 109708990 109709030 -39808007 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1422 6718 162 44 2 chr6 109709030 109709156 -39807881 - L1_Mm LINE L1 -1243 4640 4513 3 1422 2934 155 31 11 chr6 109709156 109709678 -39807359 + Lx LINE L1 6116 6647 -7 3 1422 1048 122 0 0 chr6 109709895 109710042 -39806995 + B1_Mus1 SINE Alu 2 148 0 3 1422 30 83 0 0 chr6 109710133 109710205 -39806832 + AT_rich Low_complexity Low_complexity 1 72 0 3 1422 447 19 0 0 chr6 109712025 109712077 -39804960 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1422 297 51 0 0 chr6 109712742 109712781 -39804256 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 1422 8357 154 34 67 chr6 109712849 109713140 -39803897 - RLTR21 LTR ERVK 0 1572 1301 3 1422 291 71 0 0 chr6 109713140 109713182 -39803855 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1422 8357 154 34 67 chr6 109713182 109713661 -39803376 - RLTR21 LTR ERVK -272 1300 896 3 1422 1090 29 0 86 chr6 109713661 109713813 -39803224 + B1_Mm SINE Alu 2 140 -7 3 1422 203 0 0 36 chr6 109713822 109713850 -39803187 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1422 8357 154 34 67 chr6 109713850 109714693 -39802344 - RLTR21 LTR ERVK -685 887 3 3 1422 264 309 170 14 chr6 109714716 109714857 -39802180 - MER5A DNA MER1_type -20 169 7 3 1422 282 138 0 0 chr6 109714870 109714928 -39802109 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1422 497 326 108 6 chr6 109715024 109715200 -39801837 - RMER30 DNA MER1_type -1 201 8 3 1422 210 143 0 0 chr6 109715291 109715326 -39801711 + (TTC)n Simple_repeat Simple_repeat 2 36 0 3 1422 273 337 44 22 chr6 109715536 109715627 -39801410 - B4A SINE B4 -118 174 82 3 1422 443 268 62 47 chr6 109715636 109715817 -39801220 - B3A SINE B2 0 195 2 3 1422 378 0 0 0 chr6 109715858 109715900 -39801137 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1422 314 258 120 30 chr6 109715937 109716037 -39801000 - RSINE1 SINE B4 -36 129 21 3 1422 311 288 0 19 chr6 109716074 109716191 -39800846 - PB1D7 SINE Alu -21 128 14 3 1422 313 382 70 41 chr6 109716936 109717179 -39799858 - MER58B DNA MER1_type -90 251 2 3 1422 480 398 25 3 chr6 109717529 109717814 -39799223 + B4A SINE B4 2 292 0 3 1422 6170 139 25 5 chr6 109718008 109718987 -39798050 - Lx LINE L1 0 6654 5657 3 1422 1254 89 19 42 chr6 109719075 109719287 -39797750 - L1Md_F2 LINE L1 -2 6580 6374 3 1422 423 315 112 22 chr6 109719625 109719849 -39797188 - RMER20B LTR ERVK -258 369 126 3 1422 339 184 214 22 chr6 109721324 109721413 -39795624 + ORR1A2 LTR MaLR 1 106 -223 3 1422 8297 27 0 0 chr6 109721422 109723026 -39794011 - L1Md_T LINE L1 -2 6580 4976 3 1422 12175 16 3 0 chr6 109723026 109724443 -39792594 + L1Md_T LINE L1 3580 5001 -882 3 1422 1272 193 4 4 chr6 109724443 109724677 -39792360 + ORR1A2 LTR MaLR 94 327 0 3 1422 414 39 0 0 chr6 109724835 109724887 -39792150 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1422 618 204 80 0 chr6 109725355 109725492 -39791545 + RMER4B LTR ERVK 17 164 -421 3 1422 457 257 326 0 chr6 109725623 109725798 -39791239 + RMER4B LTR ERVK 343 574 -11 3 1422 297 346 80 28 chr6 109727797 109728047 -39788990 + ERVL-B4-int LTR ERVL 4928 5190 -524 3 1422 670 314 80 41 chr6 109728511 109728850 -39788187 + MLT2D LTR ERVL 2 353 -61 3 1422 315 0 0 0 chr6 109728934 109728969 -39788068 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1422 1449 34 0 0 chr6 109728969 109729143 -39787894 + (GA)n Simple_repeat Simple_repeat 2 176 0 3 1422 216 0 0 0 chr6 109729320 109729344 -39787693 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1422 210 154 51 0 chr6 109729425 109729464 -39787573 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 3 1422 22 70 0 0 chr6 109729737 109729780 -39787257 + AT_rich Low_complexity Low_complexity 1 43 0 3 1422 823 176 15 99 chr6 109729868 109730070 -39786967 + LSU-rRNA_Hsa rRNA rRNA 3931 4115 -920 3 1422 1117 99 47 6 chr6 109730077 109730249 -39786788 + B2_Mm2 SINE B2 8 186 -9 3 1422 294 29 0 0 chr6 109730252 109730287 -39786750 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1422 514 231 103 0 chr6 109730423 109730540 -39786497 + RSINE1 SINE B4 2 130 -35 3 1422 23 0 0 0 chr6 109732006 109732029 -39785008 + AT_rich Low_complexity Low_complexity 1 23 0 3 1422 273 369 0 56 chr6 109732035 109732124 -39784913 + RSINE1 SINE B4 1 84 -81 3 1422 205 200 0 24 chr6 109732782 109732823 -39784214 + CT-rich Low_complexity Low_complexity 4 43 0 3 1422 29 0 0 0 chr6 109733685 109733714 -39783323 + AT_rich Low_complexity Low_complexity 1 29 0 3 1422 291 319 138 66 chr6 109733792 109734111 -39782926 + MLT1C LTR MaLR 6 347 -120 3 1422 285 29 0 0 chr6 109734300 109734334 -39782703 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1422 356 247 159 7 chr6 109735626 109735777 -39781260 + L1MC3 LINE L1 7529 7702 -83 3 1422 381 43 0 0 chr6 109735989 109736036 -39781001 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1422 613 92 20 0 chr6 109737286 109737384 -39779653 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 3 1422 207 0 0 0 chr6 109738543 109738566 -39778471 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1422 563 214 75 15 chr6 109738566 109738699 -39778338 - B1_Mus1 SINE Alu -3 145 5 3 1422 194 273 38 25 chr6 109738705 109738784 -39778253 - MIR SINE MIR -47 215 136 3 1422 483 18 0 0 chr6 109738952 109739008 -39778029 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 3 1422 482 155 82 0 chr6 109739429 109739526 -39777511 + Lx4A LINE L1 5902 6006 -1052 3 1422 1336 127 48 24 chr6 109739539 109739789 -39777248 + Lx LINE L1 6393 6648 -6 3 1422 5439 153 82 15 chr6 109739790 109740780 -39776257 + Lx4A LINE L1 5999 7054 -4 3 1422 34 0 0 0 chr6 109740781 109740815 -39776222 + AT_rich Low_complexity Low_complexity 1 34 0 3 1422 585 0 0 0 chr6 109741297 109741362 -39775675 + (GTTTG)n Simple_repeat Simple_repeat 2 66 0 3 1422 23 0 0 0 chr6 109741975 109741998 -39775039 + AT_rich Low_complexity Low_complexity 1 23 0 3 1422 660 48 0 0 chr6 109742879 109742963 -39774074 + (GA)n Simple_repeat Simple_repeat 1 84 0 3 1422 556 317 97 62 chr6 109743525 109743784 -39773253 + B4A SINE B4 2 269 -23 3 1422 348 133 0 0 chr6 109743825 109743885 -39773152 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1422 22 35 0 0 chr6 109744922 109744951 -39772086 + AT_rich Low_complexity Low_complexity 1 29 0 3 1422 1063 245 158 3 chr6 109745784 109746169 -39770868 - L1_Mur3 LINE L1 -969 4911 4467 3 1422 3639 148 93 28 chr6 109746498 109747253 -39769784 + RLTR22_Mur LTR ERVK 3 806 -1042 3 1422 232 371 67 0 chr6 109747332 109747421 -39769616 - MLT1F-int LTR MaLR -683 806 712 3 1422 639 152 223 38 chr6 109747443 109747627 -39769410 + RLTR22_Mur LTR ERVK 1591 1808 -40 3 1422 572 70 40 10 chr6 109747978 109748079 -39768958 + L1_Mus3 LINE L1 6534 6637 -1 3 1422 2245 198 210 27 chr6 109749290 109749873 -39767164 + RMER6C LTR ERVK 1 690 0 3 1422 315 141 0 0 chr6 109750574 109750638 -39766399 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1422 977 279 121 16 chr6 109750770 109751149 -39765888 + MTD LTR MaLR 1 419 0 3 1422 405 0 0 0 chr6 109751371 109751416 -39765621 + (TTAA)n Simple_repeat Simple_repeat 4 48 0 3 1422 180 0 0 0 chr6 109751632 109751652 -39765385 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1422 1043 73 0 7 chr6 109751711 109751848 -39765189 + B1_Mus1 SINE Alu 2 137 -11 3 1422 258 32 0 0 chr6 109751848 109751879 -39765158 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 3 1422 1030 226 18 0 chr6 109752655 109752872 -39764165 - URR1B DNA MER1_type 0 225 5 3 1422 411 73 0 0 chr6 109753277 109753332 -39763705 + (TTG)n Simple_repeat Simple_repeat 2 56 0 3 1422 315 71 0 0 chr6 109753380 109753422 -39763615 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1422 558 344 100 42 chr6 109753426 109753666 -39763371 - B4 SINE B4 -10 282 29 3 1422 297 0 0 0 chr6 109753668 109753701 -39763336 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 1422 5667 89 32 6 chr6 109753701 109754501 -39762536 - L1_Mus3 LINE L1 -16 6622 5802 3 1422 24 0 0 0 chr6 109754501 109754525 -39762512 + AT_rich Low_complexity Low_complexity 1 24 0 3 1422 2490 123 0 5 chr6 109754722 109755091 -39761946 - L1_Mm LINE L1 -75 5808 5442 3 1422 25 51 0 0 chr6 109756019 109756058 -39760979 + AT_rich Low_complexity Low_complexity 1 39 0 3 1422 576 29 0 0 chr6 109756485 109756555 -39760482 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1422 313 323 8 24 chr6 109757504 109757631 -39759406 - L2a LINE L2 -1 3425 3301 3 1422 470 313 48 21 chr6 109757965 109758151 -39758886 - MLT1K LTR MaLR -44 551 361 3 1422 489 361 80 70 chr6 109758162 109758576 -39758461 - MER68 LTR ERVL -10 553 136 3 1422 272 25 0 48 chr6 109759203 109759245 -39757792 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 3 1422 433 217 22 52 chr6 109759280 109759416 -39757621 - Lx7 LINE L1 -6 7690 7559 3 1422 308 43 22 0 chr6 109760233 109760279 -39756758 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1422 550 124 9 0 chr6 109760746 109760851 -39756186 + L1_Mus3 LINE L1 6533 6638 0 4 1422 3926 212 11 25 chr6 109761264 109762066 -39754971 + Lx5 LINE L1 6257 7047 -3 4 1422 314 306 15 86 chr6 109762214 109762360 -39754677 - L2c LINE L2 -5 3421 3272 4 1422 614 337 30 15 chr6 109762846 109763114 -39753923 + B4A SINE B4 2 273 -19 4 1422 263 28 0 27 chr6 109763472 109763509 -39753528 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4 1422 279 0 0 0 chr6 109763598 109763629 -39753408 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1422 2074 199 91 26 chr6 109763680 109764174 -39752863 + RLTR11A LTR ERVK 3 528 0 4 1422 205 133 44 0 chr6 109764537 109764582 -39752455 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1422 343 343 73 0 chr6 109764614 109764751 -39752286 - MER5A DNA MER1_type -38 151 5 4 1422 23 78 0 0 chr6 109764933 109764984 -39752053 + AT_rich Low_complexity Low_complexity 1 51 0 4 1422 879 82 0 0 chr6 109765612 109765746 -39751291 + (TC)n Simple_repeat Simple_repeat 1 134 0 4 1422 357 289 173 26 chr6 109765758 109765914 -39751123 + B3A SINE B2 4 182 -16 4 1422 21 57 0 0 chr6 109765927 109765962 -39751075 + AT_rich Low_complexity Low_complexity 1 35 0 4 1422 2565 256 33 134 chr6 109766349 109767368 -39749669 - RMER17B LTR ERVK -42 916 1 4 1422 320 196 185 0 chr6 109767369 109767461 -39749576 + RMER4B LTR ERVK 1 109 -476 4 1422 493 245 190 83 chr6 109767634 109767956 -39749081 + RMER4B LTR ERVK 119 553 -58 4 1422 214 263 18 0 chr6 109768021 109768078 -39748959 + (CATA)n Simple_repeat Simple_repeat 2 59 0 4 1422 284 292 70 22 chr6 109768296 109768474 -39748563 + L1M1 LINE L1 5700 5884 -416 4 1422 1969 214 137 75 chr6 109769434 109770009 -39747028 - RMER19C LTR ERVK 0 611 1 4 1422 471 305 84 62 chr6 109770102 109770280 -39746757 - B3A SINE B2 -11 184 3 4 1422 221 297 118 67 chr6 109770985 109771104 -39745933 - L2c LINE L2 -154 3233 3109 4 1422 482 283 16 25 chr6 109772059 109772208 -39744829 + B3 SINE B2 1 157 -38 4 1422 618 280 31 40 chr6 109772270 109772493 -39744544 - ID_B1 SINE B4 -3 221 1 4 1422 41 48 0 0 chr6 109772497 109772559 -39744478 + AT_rich Low_complexity Low_complexity 1 62 0 4 1422 273 29 0 0 chr6 109772748 109772782 -39744255 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 4 1422 450 0 0 0 chr6 109772842 109772892 -39744145 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1422 905 36 0 0 chr6 109773532 109773644 -39743393 + B2_Mm1t SINE B2 1 112 -81 4 1422 537 0 0 0 chr6 109773645 109773712 -39743325 + L1Md_A LINE L1 6516 6582 0 4 1422 24 32 0 0 chr6 109775222 109775253 -39741784 + AT_rich Low_complexity Low_complexity 1 31 0 4 1422 329 287 56 0 chr6 109775916 109776024 -39741013 + HAL1 LINE L1 1835 1948 -559 4 1422 24 67 0 0 chr6 109776264 109776309 -39740728 + AT_rich Low_complexity Low_complexity 1 45 0 4 1422 293 321 207 13 chr6 109776997 109777290 -39739747 - MER74A LTR ERVL 0 558 209 4 1422 522 316 77 6 chr6 109777429 109777598 -39739439 + B3A SINE B2 1 181 -17 4 1422 452 328 11 6 chr6 109777628 109777806 -39739231 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1422 30372 93 16 2 chr6 109778368 109783251 -39733786 + L1Md_F2 LINE L1 619 5584 -299 4 1422 7244 73 7 7 chr6 109783253 109784236 -39732801 + L1Md_F2 LINE L1 5587 6569 -13 4 1422 21 57 0 0 chr6 109784240 109784275 -39732762 + AT_rich Low_complexity Low_complexity 1 35 0 4 1422 350 21 0 21 chr6 109784295 109784343 -39732694 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 4 1422 239 333 44 0 chr6 109784600 109784714 -39732323 - PB1D7 SINE Alu -1 119 1 4 1422 405 353 58 7 chr6 109784820 109784957 -39732080 - B1F SINE Alu 0 149 6 4 1422 550 260 107 0 chr6 109785396 109785546 -39731491 - B3 SINE B2 -12 204 39 4 1422 33 0 0 0 chr6 109787041 109787074 -39729963 + AT_rich Low_complexity Low_complexity 1 33 0 4 1422 21 82 0 0 chr6 109789467 109789516 -39727521 + AT_rich Low_complexity Low_complexity 1 49 0 4 1422 2191 248 100 87 chr6 109790357 109790682 -39726355 + L1_Rod LINE L1 2485 2839 -3008 4 1422 216 0 0 0 chr6 109790682 109790706 -39726331 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1422 2191 248 100 87 chr6 109790706 109790826 -39726211 + L1_Rod LINE L1 2840 2938 -2909 4 1422 369 0 0 0 chr6 109790826 109790867 -39726170 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1422 2191 248 100 87 chr6 109790867 109790930 -39726107 + L1_Rod LINE L1 2939 3013 -2834 4 1422 1896 58 4 23 chr6 109790930 109791194 -39725843 - L1Md_F2 LINE L1 -6 6576 6318 4 1422 2191 248 100 87 chr6 109791194 109791519 -39725518 + L1_Rod LINE L1 3014 3341 -2506 4 1422 2461 65 3 32 chr6 109791519 109791866 -39725171 - Lx3_Mus LINE L1 0 7009 6673 4 1422 2191 248 100 87 chr6 109791866 109791894 -39725143 + L1_Rod LINE L1 3342 3350 -2497 4 1422 3122 56 2 8 chr6 109791894 109792292 -39724745 + MTA_Mm LTR MaLR 1 396 0 4 1422 2191 248 100 87 chr6 109792292 109792420 -39724617 + L1_Rod LINE L1 3351 3493 -2354 4 1422 198 0 0 0 chr6 109792420 109792442 -39724595 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 4 1422 2191 248 100 87 chr6 109792442 109792604 -39724433 + L1_Rod LINE L1 3494 3655 -2192 4 1422 456 51 0 0 chr6 109792604 109792663 -39724374 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1422 2191 248 100 87 chr6 109792663 109792767 -39724270 + L1_Rod LINE L1 3656 3760 -2087 4 1422 1119 270 48 46 chr6 109793209 109793992 -39723045 + Lx7 LINE L1 873 1656 -4224 4 1422 1260 251 47 49 chr6 109793990 109794013 -39723024 + Lx7 LINE L1 4427 4449 -1431 4 1422 6184 56 19 2 chr6 109794013 109794805 -39722232 - L1Md_F2 LINE L1 -12 6570 5766 4 1422 1260 251 47 49 chr6 109794805 109794907 -39722130 + Lx7 LINE L1 4450 4559 -1321 4 1422 2495 88 0 37 chr6 109794907 109795284 -39721753 - L1Md_F2 LINE L1 0 6582 6220 4 1422 1260 251 47 49 chr6 109795284 109795630 -39721407 + Lx7 LINE L1 4560 4898 -982 4 1422 2206 286 68 18 chr6 109795636 109796860 -39720177 + Lx7 LINE L1 5483 6797 -899 4 1422 613 306 35 0 chr6 109796856 109797055 -39719982 + Lx9 LINE L1 6548 6753 -891 4 1422 1074 69 0 0 chr6 109798688 109798832 -39718205 + (GA)n Simple_repeat Simple_repeat 2 145 0 4 1422 868 227 34 0 chr6 109799039 109799215 -39717822 - RMER1C Other Other -356 986 805 4 1422 462 182 67 60 chr6 109799219 109799353 -39717684 + RMER1C Other Other 1091 1225 -117 4 1422 696 83 0 0 chr6 109799377 109799473 -39717564 + (TCTCC)n Simple_repeat Simple_repeat 1 96 0 4 1422 646 154 19 30 chr6 109799497 109799641 -39717396 + RMER1C Other Other 1198 1323 -19 4 1422 284 346 9 28 chr6 109800318 109800425 -39716612 + PB1D10 SINE Alu 2 106 -11 4 1422 401 364 68 0 chr6 109801904 109801940 -39715097 + B3A SINE B2 1 44 -154 4 1422 1098 81 0 0 chr6 109801940 109802112 -39714925 + (TC)n Simple_repeat Simple_repeat 1 172 0 4 1422 401 355 59 34 chr6 109802112 109802279 -39714758 + B3A SINE B2 36 208 -8 4 1422 180 236 71 18 chr6 109803234 109803290 -39713747 + MIRc SINE MIR 181 239 -29 4 1422 1345 155 5 0 chr6 109804433 109804646 -39712391 + L1_Mur1 LINE L1 5524 5737 -149 4 1422 2118 290 62 15 chr6 109804647 109805372 -39711665 + Lx2 LINE L1 6214 6972 -25 4 1422 401 0 0 20 chr6 109805372 109805422 -39711615 + (TAA)n Simple_repeat Simple_repeat 2 50 0 4 1422 261 357 0 0 chr6 109806436 109806520 -39710517 - MIRb SINE MIR -130 138 55 4 1422 5098 86 19 4 chr6 109808060 109808781 -39708256 - Lx3_Mus LINE L1 0 7009 6278 4 1422 5491 100 17 3 chr6 109808781 109809606 -39707431 + L1Md_F3 LINE L1 4912 5758 -826 4 1422 521 308 0 0 chr6 109810174 109810304 -39706733 + ID_B1 SINE B4 82 211 -13 4 1422 1595 21 11 0 chr6 109810356 109810543 -39706494 + B2_Mm1a SINE B2 1 189 -4 4 1422 383 302 24 32 chr6 109810674 109810797 -39706240 + B1F SINE Alu 7 128 -21 4 1422 436 237 62 62 chr6 109810881 109811043 -39705994 + RSINE1 SINE B4 2 163 -2 4 1422 1155 61 0 20 chr6 109811187 109811337 -39705700 + B1_Mm SINE Alu 1 147 0 4 1422 207 0 0 0 chr6 109811337 109811360 -39705677 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1422 22 35 0 0 chr6 109811430 109811459 -39705578 + AT_rich Low_complexity Low_complexity 1 29 0 4 1422 371 381 45 50 chr6 109811582 109811781 -39705256 - B3A SINE B2 0 198 1 4 1422 882 191 71 71 chr6 109812884 109813109 -39703928 - URR1A DNA MER1_type 0 226 2 4 1422 204 158 26 0 chr6 109813447 109813485 -39703552 + GA-rich Low_complexity Low_complexity 4 42 0 4 1422 835 259 161 29 chr6 109814527 109814838 -39702199 - MTEa LTR MaLR -8 371 20 4 1422 1130 288 18 4 chr6 109815075 109815354 -39701683 + Lx5 LINE L1 6765 7047 -3 4 1422 815 164 0 12 chr6 109815354 109815465 -39701572 + polypurine Low_complexity Low_complexity 2 112 0 4 1422 810 81 0 0 chr6 109815465 109815576 -39701461 + (GAAA)n Simple_repeat Simple_repeat 4 114 0 4 1422 815 164 0 12 chr6 109815576 109815631 -39701406 + polypurine Low_complexity Low_complexity 113 166 0 4 1422 1201 272 61 20 chr6 109815632 109816040 -39700997 + Lx7 LINE L1 6849 7273 -423 4 1422 608 102 10 0 chr6 109816118 109816216 -39700821 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 1422 631 87 9 9 chr6 109816217 109816322 -39700715 + (GA)n Simple_repeat Simple_repeat 2 106 0 4 1422 587 284 35 14 chr6 109816385 109816528 -39700509 + B1_Mur1 SINE Alu 4 149 0 4 1422 396 0 0 0 chr6 109816530 109816574 -39700463 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1422 354 282 65 33 chr6 109817021 109817250 -39699787 - L1MA6 LINE L1 0 6300 6067 4 1422 1376 290 91 19 chr6 109817648 109818130 -39698907 + RCHARR1 DNA MER1_type 1 517 -457 4 1422 620 275 11 64 chr6 109818180 109818460 -39698577 + RCHARR1 DNA MER1_type 709 973 -1 4 1422 5274 67 3 9 chr6 109818538 109819231 -39697806 - L1_Mus1 LINE L1 -2 6565 5877 4 1422 2328 37 0 0 chr6 109819231 109819504 -39697533 + L1_Mus1 LINE L1 5618 5890 -677 4 1422 196 120 20 20 chr6 109819956 109820007 -39697030 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1422 208 254 0 0 chr6 109820620 109820675 -39696362 + T-rich Low_complexity Low_complexity 1 55 0 4 1422 192 77 0 0 chr6 109822149 109822175 -39694862 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1422 198 156 0 0 chr6 109824104 109824149 -39692888 + A-rich Low_complexity Low_complexity 1 45 0 4 1422 1208 208 111 74 chr6 109824812 109825278 -39691759 + RMER19C LTR ERVK 109 611 0 4 1422 246 308 80 37 chr6 109825465 109825627 -39691410 - MER58B DNA MER1_type -94 247 79 4 1422 1659 84 38 58 chr6 109825638 109825929 -39691108 + RLTR45 LTR ERVK 71 355 -127 4 1422 25 51 0 0 chr6 109825929 109825968 -39691069 + AT_rich Low_complexity Low_complexity 1 39 0 4 1422 2706 225 63 7 chr6 109826972 109827649 -39689388 + Lx9 LINE L1 6913 7627 -17 4 1422 3619 81 28 6 chr6 109827653 109828152 -39688885 + L1Md_F2 LINE L1 6073 6582 0 4 1422 295 243 0 28 chr6 109828160 109828232 -39688805 + B1_Mus1 SINE Alu 3 72 -76 5 1422 186 258 0 0 chr6 109828424 109828486 -39688551 + CT-rich Low_complexity Low_complexity 1 62 0 5 1422 558 43 0 0 chr6 109828487 109828556 -39688481 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1422 414 0 0 0 chr6 109828557 109828603 -39688434 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1422 6523 50 10 5 chr6 109829598 109830401 -39686636 + RLTR13C2 LTR ERVK 1 807 -1 5 1422 468 0 0 0 chr6 109830423 109830475 -39686562 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1422 1600 333 66 61 chr6 109830502 109831121 -39685916 + Lx9 LINE L1 6368 7023 -621 5 1422 1150 50 0 7 chr6 109831121 109831263 -39685774 + B1_Mm SINE Alu 2 142 -5 5 1422 1600 333 66 61 chr6 109831263 109831294 -39685743 + Lx9 LINE L1 7024 7046 -598 5 1422 1021 74 14 0 chr6 109831294 109831442 -39685595 + (GAA)n Simple_repeat Simple_repeat 3 152 0 5 1422 1600 341 66 56 chr6 109831442 109831964 -39685073 + Lx9 LINE L1 6967 7412 -61 5 1422 254 368 44 26 chr6 109832345 109832574 -39684463 + MER20B DNA MER1_type 278 510 -273 5 1422 221 336 43 26 chr6 109834133 109834249 -39682788 + L2a LINE L2 3309 3426 0 5 1422 223 314 22 44 chr6 109834368 109834458 -39682579 - L3 LINE CR1 -418 4071 3984 5 1422 375 304 48 10 chr6 109834827 109834930 -39682107 + B4 SINE B4 3 109 -183 5 1422 591 337 24 24 chr6 109834944 109835151 -39681886 - Lx5 LINE L1 -5 7045 6839 5 1422 2324 235 4 11 chr6 109835148 109835609 -39681428 - Lx5 LINE L1 -444 6606 6149 5 1422 3146 209 36 2 chr6 109835619 109836492 -39680545 + Lx5 LINE L1 5196 6101 -949 5 1422 491 306 54 13 chr6 109836497 109836646 -39680391 + B4 SINE B4 97 251 -41 5 1422 617 307 170 46 chr6 109837430 109837759 -39679278 - MTD LTR MaLR -12 388 17 5 177 1151 68 12 0 chr6 109838333 109838494 -39678543 + (TTTC)n Simple_repeat Simple_repeat 3 165 0 5 1423 248 314 38 0 chr6 109839544 109839649 -39677388 - L1MA6 LINE L1 -76 6224 6116 5 1423 261 0 0 0 chr6 109839880 109839909 -39677128 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1423 25 83 0 0 chr6 109840860 109840920 -39676117 + AT_rich Low_complexity Low_complexity 1 60 0 5 1423 381 43 0 0 chr6 109841328 109841375 -39675662 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1423 546 297 41 5 chr6 109841480 109841700 -39675337 - Lx9 LINE L1 -191 7453 7226 5 1423 3098 3 3 0 chr6 109841884 109842235 -39674802 - L1Md_T LINE L1 0 6582 6231 5 1423 560 320 59 51 chr6 109842558 109842914 -39674123 + L1MB7 LINE L1 14 372 -6170 5 1423 629 323 143 53 chr6 109843068 109843787 -39673250 + L1MB7 LINE L1 609 1392 -5150 5 1423 230 254 0 0 chr6 109843791 109843850 -39673187 + L1MB7 LINE L1 1506 1564 -5070 5 1423 221 391 11 0 chr6 109844314 109844406 -39672631 + PB1D10 SINE Alu 10 102 -15 5 1423 432 299 101 9 chr6 109844579 109844906 -39672131 + L1MB7 LINE L1 2967 3323 -3321 5 1423 584 282 108 45 chr6 109845139 109845517 -39671520 + L1MB7 LINE L1 6051 6452 -230 5 1423 2594 127 0 26 chr6 109845522 109845944 -39671093 + Lx3C LINE L1 5821 6231 -745 5 1423 2154 193 21 57 chr6 109845945 109846422 -39670615 + Lx3C LINE L1 6490 6949 -27 5 1423 2563 172 9 0 chr6 109846450 109846904 -39670133 + Lx2 LINE L1 6533 6990 -7 5 1423 360 0 0 0 chr6 109847486 109847526 -39669511 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1423 696 24 0 0 chr6 109848443 109848525 -39668512 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1423 213 39 0 0 chr6 109849161 109849187 -39667850 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 1423 285 267 0 13 chr6 109849804 109849880 -39667157 + (CATATA)n Simple_repeat Simple_repeat 4 78 0 5 1423 1056 168 0 31 chr6 109850443 109850634 -39666403 - RMER6B LTR ERVK -7 454 270 5 1423 441 0 0 0 chr6 109850634 109850683 -39666354 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1423 966 149 60 49 chr6 109850683 109850867 -39666170 - RMER6B LTR ERVK -263 198 13 5 1423 474 65 0 0 chr6 109850886 109850948 -39666089 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 1423 189 0 0 0 chr6 109853017 109853038 -39663999 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1423 365 281 21 10 chr6 109853222 109853319 -39663718 + B4A SINE B4 1 98 -194 5 1423 328 214 14 0 chr6 109853339 109853409 -39663628 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 1423 1337 304 62 20 chr6 109853423 109853872 -39663165 - Lx6 LINE L1 -26 7434 6967 5 1423 249 323 31 0 chr6 109853872 109853937 -39663100 + B4A SINE B4 108 174 -118 5 1423 26 50 0 0 chr6 109854847 109854887 -39662150 + AT_rich Low_complexity Low_complexity 1 40 0 5 1423 411 73 0 0 chr6 109855028 109855083 -39661954 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 5 1423 432 37 0 0 chr6 109855591 109855645 -39661392 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1423 436 266 156 29 chr6 109855934 109856209 -39660828 + L1MA5 LINE L1 5950 6259 -41 5 1423 1336 178 100 69 chr6 109856745 109857064 -39659973 - ORR1A4 LTR MaLR 0 329 1 5 1423 21 36 0 0 chr6 109857310 109857338 -39659699 + AT_rich Low_complexity Low_complexity 1 28 0 5 1423 1858 92 14 21 chr6 109857376 109857663 -39659374 + L1Md_F2 LINE L1 6295 6579 -3 5 1423 255 189 0 0 chr6 109857755 109857808 -39659229 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 5 1423 797 191 7 7 chr6 109858516 109858658 -39658379 - RMER6D LTR ERVK 0 720 579 5 1423 733 217 15 73 chr6 109858658 109858862 -39658175 + MYSERV6-int LTR ERVK 4320 4511 -4448 5 1423 4808 93 1 0 chr6 109858862 109859517 -39657520 - L1_Mus2 LINE L1 -311 5572 4917 5 1423 6886 82 13 8 chr6 109859514 109860493 -39656544 + L1_Mus2 LINE L1 5631 6566 0 5 1423 1884 173 95 37 chr6 109860493 109860902 -39656135 + RMER6-int LTR ERVK 2744 3176 -1 5 1423 905 181 71 33 chr6 109860903 109861086 -39655951 + RMER6D LTR ERVK 1 190 -530 5 1423 516 320 89 2 chr6 109861098 109861393 -39655644 - L1MB7 LINE L1 -276 5908 5586 5 1423 347 368 53 0 chr6 109861740 109861854 -39655183 + ID_B1 SINE B4 89 208 -16 5 1423 413 0 39 0 chr6 109862081 109862133 -39654904 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1423 1085 90 7 0 chr6 109862134 109862278 -39654759 - B1_Mus1 SINE Alu -3 145 1 5 1423 986 286 66 30 chr6 109862295 109862734 -39654303 - L1MC1 LINE L1 -37 6296 5842 5 1423 632 285 48 12 chr6 109862792 109862959 -39654078 - B4 SINE B4 -12 280 108 5 1423 22 0 0 0 chr6 109863285 109863307 -39653730 + AT_rich Low_complexity Low_complexity 1 22 0 5 1423 351 0 0 0 chr6 109864654 109864693 -39652344 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1423 318 206 16 0 chr6 109865742 109865805 -39651232 + MT2A LTR ERVL 1 64 -469 5 1423 11597 96 5 2 chr6 109865805 109868175 -39648862 + L1_Mus2 LINE L1 4188 6564 -2 5 1423 578 331 28 0 chr6 109868335 109868516 -39648521 + MTC LTR MaLR 226 411 -10 5 1423 845 272 109 12 chr6 109868697 109868969 -39648068 + ORR1D1 LTR MaLR 1 311 -59 5 1423 2606 103 45 2 chr6 109868969 109869368 -39647669 - L1_Mus3 LINE L1 -1 6637 6222 5 1423 341 104 0 0 chr6 109869368 109869416 -39647621 + L1_Mus3 LINE L1 6187 6234 -332 5 1423 368 45 0 0 chr6 109869411 109869455 -39647582 - L1_Mur1 LINE L1 -1358 4528 4485 5 1423 785 183 52 19 chr6 109869438 109869650 -39647387 + Lx LINE L1 4481 4697 -1180 5 1423 6604 78 15 8 chr6 109869652 109870560 -39646477 - L1_Mus1 LINE L1 0 6567 5653 5 1423 2413 58 3 18 chr6 109870560 109870891 -39646146 - IAPEY2_LTR LTR ERVK 0 357 32 5 1423 2325 98 0 0 chr6 109870901 109871218 -39645819 - L1_Mm LINE L1 -225 5658 5342 5 1423 6820 146 32 10 chr6 109871204 109873116 -39643921 + Lx LINE L1 4672 6623 -31 5 1423 21 0 0 0 chr6 109873848 109873869 -39643168 + AT_rich Low_complexity Low_complexity 1 21 0 5 1423 1475 64 32 0 chr6 109874951 109875138 -39641899 + L1Md_F2 LINE L1 5392 5584 -299 5 1423 7535 72 4 5 chr6 109875140 109876125 -39640912 + L1Md_F2 LINE L1 5587 6570 -12 5 1423 188 319 59 25 chr6 109876715 109876834 -39640203 - MIR SINE MIR -41 221 99 5 1423 2096 132 26 6 chr6 109877315 109877666 -39639371 - Lx4A LINE L1 -1114 5944 5587 5 1423 7210 92 6 0 chr6 109877686 109878706 -39638331 - Lx4A LINE L1 -636 5250 4225 5 1423 8329 131 90 14 chr6 109878702 109880312 -39636725 + Lx3A LINE L1 5227 6956 -25 5 1423 2905 100 9 14 chr6 109880481 109880919 -39636118 - L1_Mur2 LINE L1 -295 5582 5147 5 1423 4311 179 67 2 chr6 109880919 109881737 -39635300 + Lx4A LINE L1 6175 7045 -13 5 1423 293 47 23 0 chr6 109881738 109881781 -39635256 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 5 1423 367 282 43 0 chr6 109881989 109882106 -39634931 + B3 SINE B2 8 129 -87 5 1423 434 252 10 0 chr6 109882411 109882510 -39634527 - B2_Mm2 SINE B2 -93 102 3 5 1423 261 0 0 0 chr6 109882528 109882557 -39634480 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1423 3597 161 69 74 chr6 109882560 109883203 -39633834 - Lx2B LINE L1 -10 6990 6333 5 1423 2799 92 26 17 chr6 109883203 109883622 -39633415 + Lx LINE L1 6224 6646 -8 5 1423 3597 161 69 74 chr6 109883622 109883765 -39633272 - Lx2B LINE L1 -668 6332 6208 5 1423 547 147 18 27 chr6 109883760 109883872 -39633165 - Lx2A1 LINE L1 -1047 5961 5851 5 1423 276 53 0 0 chr6 109883872 109883910 -39633127 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1423 2880 189 2 16 chr6 109883910 109884469 -39632568 - Lx2A1 LINE L1 -18 5868 5318 5 1423 210 171 0 0 chr6 109885228 109885269 -39631768 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 1423 296 325 38 28 chr6 109886190 109886402 -39630635 - L1MD LINE L1 -494 5748 5535 5 1423 1103 224 33 8 chr6 109886471 109886714 -39630323 + MTC LTR MaLR 1 249 -172 5 1423 7003 117 28 11 chr6 109886714 109888265 -39628772 + Lx LINE L1 5062 6640 -14 5 1423 716 244 15 116 chr6 109888265 109888394 -39628643 + MTC LTR MaLR 176 329 -92 5 1423 4750 15 0 0 chr6 109888394 109888928 -39628109 + L1Md_T LINE L1 6049 6582 0 5 1423 716 236 5 110 chr6 109888928 109889040 -39627997 + MTC LTR MaLR 330 421 0 5 1423 4116 225 47 30 chr6 109889039 109890006 -39627031 + MTC-int LTR MaLR 2 984 -274 5 1423 26 88 0 0 chr6 109890058 109890126 -39626911 + AT_rich Low_complexity Low_complexity 1 68 0 5 1423 431 284 86 23 chr6 109890400 109890620 -39626417 - L1MDa LINE L1 -4321 2312 2079 5 1423 8062 37 2 0 chr6 109890661 109891623 -39625414 - L1Md_T LINE L1 0 6582 5619 5 1423 227 328 124 41 chr6 109891626 109892632 -39624405 - L1MDa LINE L1 -4604 2029 940 5 1423 623 299 118 12 chr6 109892770 109893109 -39623928 - MTE2b LTR MaLR -4 375 1 5 1423 560 350 60 21 chr6 109893125 109893560 -39623477 - L1MDa LINE L1 -6095 538 87 5 1423 655 281 331 28 chr6 109894966 109895250 -39621787 + ORR1D2 LTR MaLR 1 370 0 5 1423 655 133 211 0 chr6 109895363 109895491 -39621546 - URR1A DNA MER1_type 0 226 72 5 1423 25 0 0 0 chr6 109896232 109896257 -39620780 + AT_rich Low_complexity Low_complexity 1 25 0 5 1423 224 125 46 15 chr6 109896833 109896898 -39620139 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 1423 970 116 0 64 chr6 109897048 109897205 -39619832 + B1_Mus1 SINE Alu 2 148 0 5 1423 405 136 0 0 chr6 109897205 109897271 -39619766 + (A)n Simple_repeat Simple_repeat 1 66 0 5 1423 205 357 79 8 chr6 109898412 109898539 -39618498 + MIR3 SINE MIR 64 199 -9 5 1423 477 0 0 0 chr6 109899434 109899487 -39617550 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1423 460 329 131 12 chr6 109899707 109899867 -39617170 - B3A SINE B2 -36 180 2 6 1423 21 36 0 0 chr6 109900727 109900755 -39616282 + AT_rich Low_complexity Low_complexity 1 28 0 6 1423 2211 129 3 0 chr6 109901128 109901454 -39615583 + ORR1A2 LTR MaLR 1 327 0 6 1423 21 0 0 0 chr6 109901501 109901522 -39615515 + AT_rich Low_complexity Low_complexity 1 21 0 6 1423 1835 165 3 60 chr6 109902297 109902646 -39614391 + ORR1A4 LTR MaLR 1 329 0 6 1423 742 274 78 37 chr6 109902820 109903116 -39613921 - RLTR12B LTR ERVK -220 308 1 6 1423 1162 85 0 0 chr6 109903200 109903365 -39613672 - L1Md_F2 LINE L1 -1 6581 6417 6 1423 4860 37 0 0 chr6 109903365 109904353 -39612684 + L1Md_Gf LINE L1 593 1677 -4209 6 1423 1887 199 74 3 chr6 109904349 109904727 -39612310 - Lx4B LINE L1 -19 7039 6635 6 1423 258 181 59 22 chr6 109904770 109904906 -39612131 + (TCTCTG)n Simple_repeat Simple_repeat 2 142 0 6 1423 942 48 0 0 chr6 109904924 109905048 -39611989 + (TC)n Simple_repeat Simple_repeat 2 125 0 6 1423 763 323 67 11 chr6 109905102 109905459 -39611578 - MER110 LTR ERV1 -38 453 77 6 1423 226 172 31 15 chr6 109906771 109906836 -39610201 + GA-rich Low_complexity Low_complexity 2 67 0 6 1423 398 244 0 23 chr6 109906900 109906988 -39610049 + B1F SINE Alu 28 113 -36 6 1423 28 61 0 0 chr6 109907108 109907157 -39609880 + AT_rich Low_complexity Low_complexity 1 49 0 6 1423 6616 79 12 12 chr6 109907652 109908554 -39608483 + RLTR13D6 LTR ERVK 1 902 0 6 1423 2866 197 113 0 chr6 109910092 109910675 -39606362 + Lx5 LINE L1 6145 6793 -257 6 1423 646 249 65 27 chr6 109910676 109910899 -39606138 - RMER12 LTR ERVK 0 1322 1125 6 1423 431 74 0 14 chr6 109910899 109910968 -39606069 + (GA)n Simple_repeat Simple_repeat 2 69 0 6 1423 537 16 0 0 chr6 109910986 109911048 -39605989 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1423 4996 139 39 16 chr6 109911048 109911916 -39605121 - RMER12 LTR ERVK -434 888 1 6 1423 1126 215 32 12 chr6 109911918 109912168 -39604869 + Lx5 LINE L1 6793 7047 -3 6 1423 55 0 0 0 chr6 109912724 109912779 -39604258 + AT_rich Low_complexity Low_complexity 1 55 0 6 1423 4786 162 42 28 chr6 109914361 109915282 -39601755 - RLTR25A LTR ERVK -159 944 11 6 1423 307 374 17 28 chr6 109915330 109915506 -39601531 - MLT1K LTR MaLR -28 567 394 6 1423 507 56 0 0 chr6 109916246 109916317 -39600720 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 6 1423 248 190 0 12 chr6 109916317 109916402 -39600635 + (TCTCTG)n Simple_repeat Simple_repeat 4 87 0 6 1423 210 171 0 0 chr6 109916407 109916448 -39600589 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1423 420 228 43 77 chr6 109917812 109918021 -39599016 + L1MA10 LINE L1 6031 6232 -102 6 1423 342 0 0 0 chr6 109919263 109919301 -39597736 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1423 189 0 0 0 chr6 109921186 109921207 -39595830 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 1423 1749 41 0 0 chr6 109921915 109922135 -39594902 - L1Md_F2 LINE L1 0 6582 6363 6 1423 209 209 0 0 chr6 109922227 109922270 -39594767 + GA-rich Low_complexity Low_complexity 1 43 0 6 1423 1375 171 156 221 chr6 109922290 109923028 -39594009 - RMER6C LTR ERVK 0 690 1 6 1423 183 42 0 0 chr6 109923039 109923063 -39593974 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1423 237 255 10 78 chr6 109923248 109923350 -39593687 - MTE2a LTR MaLR -9 370 276 6 1423 503 280 27 64 chr6 109923405 109923592 -39593445 + ORR1C2 LTR MaLR 11 190 -194 6 1423 260 260 67 27 chr6 109923568 109923718 -39593319 + RMER17D LTR ERVK 369 524 -365 6 1423 700 224 175 22 chr6 109923643 109923826 -39593211 + ORR1C2 LTR MaLR 174 384 0 6 1423 2520 139 7 12 chr6 109923895 109924304 -39592733 + MTB_Mm LTR MaLR 1 407 0 6 1423 853 324 28 35 chr6 109924526 109924986 -39592051 - L1MCb LINE L1 -1990 4574 4127 6 1423 3303 41 5 0 chr6 109924986 109925380 -39591657 - MTA_Mm LTR MaLR 0 396 1 6 1423 853 310 91 59 chr6 109925380 109925610 -39591427 - L1MCb LINE L1 -2438 4126 3875 6 1423 2825 53 3 6 chr6 109925610 109925972 -39591065 - L1Md_F3 LINE L1 -14 6570 6210 6 1423 835 310 91 59 chr6 109925972 109926018 -39591019 - L1MCb LINE L1 -2690 3874 3827 6 1423 310 324 43 65 chr6 109926018 109926203 -39590834 - B3A SINE B2 -15 183 3 6 1423 835 310 91 59 chr6 109926203 109927440 -39589597 - L1MCb LINE L1 -2738 3826 2536 6 1423 777 322 35 103 chr6 109927533 109927931 -39589106 + MTE2a LTR MaLR 3 373 -6 6 1423 255 217 0 48 chr6 109928011 109928074 -39588963 - L1M3 LINE L1 -426 5745 5686 6 1423 237 258 30 20 chr6 109928098 109928197 -39588840 + CT-rich Low_complexity Low_complexity 2 101 0 6 1423 240 258 29 29 chr6 109928246 109928314 -39588723 - tRNA-Ala-GCY_ tRNA tRNA 0 75 8 6 1423 274 246 28 28 chr6 109928256 109928327 -39588710 - ID4 SINE ID -12 71 1 6 1423 249 283 37 92 chr6 109929461 109929570 -39587467 + ORR1E LTR MaLR 257 359 0 6 1423 419 261 103 21 chr6 109929934 109930079 -39586958 + RMER30 DNA MER1_type 8 164 -38 6 1423 258 350 123 7 chr6 109929956 109930094 -39586943 - Charlie12 DNA MER1_type -2698 175 22 6 1423 255 314 27 53 chr6 109930136 109930336 -39586701 - L1MCb LINE L1 -5575 470 339 6 1423 1138 189 120 43 chr6 109930841 109931117 -39585920 + RLTR20B2 LTR ERVK 264 560 0 6 1423 11466 18 0 0 chr6 109933958 109935282 -39581755 + L1Md_A LINE L1 4263 5586 -297 6 1423 8209 42 0 0 chr6 109935282 109936277 -39580760 + L1Md_A LINE L1 5587 6581 -1 6 1423 404 232 11 10 chr6 109936281 109936568 -39580469 + GA-rich Low_complexity Low_complexity 1 287 0 6 1423 462 158 7 29 chr6 109938415 109938552 -39578485 + (TCTA)n Simple_repeat Simple_repeat 3 136 0 6 1423 469 259 93 40 chr6 109938774 109938999 -39578038 - Lx9 LINE L1 -120 7524 7288 6 1423 666 131 7 14 chr6 109939017 109939164 -39577873 + (TA)n Simple_repeat Simple_repeat 2 147 0 6 1423 192 152 0 0 chr6 109939971 109940004 -39577033 + T-rich Low_complexity Low_complexity 1 33 0 6 1423 2962 71 22 2 chr6 109940006 109940418 -39576619 - L1_Mus3 LINE L1 -3 6635 6216 6 1423 181 283 73 81 chr6 109940493 109940616 -39576421 + L2c LINE L2 3264 3385 -2 6 1423 513 0 0 0 chr6 109941510 109941567 -39575470 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1423 1809 273 56 18 chr6 109941846 109942145 -39574892 - Lx6 LINE L1 -14 7446 7139 6 1423 393 22 0 0 chr6 109942145 109942191 -39574846 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1423 1809 273 56 18 chr6 109942191 109942406 -39574631 - Lx6 LINE L1 -322 7138 6912 6 1423 768 295 66 27 chr6 109942428 109942686 -39574351 - Lx6 LINE L1 -750 6710 6443 6 1423 293 290 129 0 chr6 109943068 109943192 -39573845 - B1_Mus1 SINE Alu -4 144 5 6 1423 335 293 0 0 chr6 109943268 109943350 -39573687 - PB1D10 SINE Alu -23 94 13 6 1423 391 222 9 27 chr6 109943607 109943718 -39573319 - L1MA9 LINE L1 -41 6271 6163 6 1423 776 350 31 19 chr6 109944487 109944795 -39572242 + ORR1E LTR MaLR 4 305 -65 6 1423 372 283 8 50 chr6 109944918 109945037 -39572000 + ORR1D1 LTR MaLR 1 114 -260 6 1423 362 227 13 0 chr6 109945170 109945245 -39571792 + MTD LTR MaLR 41 116 -303 6 1423 3433 182 50 23 chr6 109945342 109946078 -39570959 - RMER6A LTR ERVK 0 756 1 6 1423 234 0 0 0 chr6 109946801 109946827 -39570210 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1423 759 300 109 30 chr6 109946906 109947487 -39569550 - L1MC1 LINE L1 -303 6030 5404 6 1423 23 33 0 0 chr6 109947601 109947631 -39569406 + AT_rich Low_complexity Low_complexity 1 30 0 6 1423 720 266 19 42 chr6 109947961 109948177 -39568860 - B3 SINE B2 -5 211 1 6 1423 1033 224 65 132 chr6 109948689 109949090 -39567947 + ORR1D1 LTR MaLR 1 374 0 6 1423 212 0 36 0 chr6 109949147 109949175 -39567862 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1423 282 315 0 0 chr6 109949691 109949764 -39567273 - MLT1G LTR MaLR -504 87 15 6 1423 861 214 290 14 chr6 109950401 109950694 -39566343 + ORR1D1 LTR MaLR 1 374 0 6 1423 730 301 204 14 chr6 109953119 109953618 -39563419 - MER45B DNA Tip100 -48 992 399 6 1423 337 414 22 51 chr6 109953629 109953764 -39563273 + B3A SINE B2 10 141 -57 6 1423 510 17 0 0 chr6 109953764 109953823 -39563214 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1423 337 414 22 51 chr6 109953823 109953865 -39563172 + B3A SINE B2 142 182 -16 6 1423 37868 47 2 3 chr6 109953998 109960541 -39556496 - L1Md_T LINE L1 0 6585 56 6 1423 903 128 0 0 chr6 109960615 109960748 -39556289 + RMER1B Other Other 713 845 -221 6 1423 1269 7 0 0 chr6 109960744 109960891 -39556146 + L1Md_T LINE L1 3565 3711 -2172 6 1423 9696 21 0 0 chr6 109960892 109962017 -39555020 + L1Md_T LINE L1 4462 5586 -297 6 1423 8990 5 0 0 chr6 109962017 109963013 -39554024 + L1Md_T LINE L1 5587 6582 0 6 1423 424 271 82 8 chr6 109964496 109964630 -39552407 - MTEb LTR MaLR -4 375 232 6 1423 24 0 0 0 chr6 109965044 109965068 -39551969 + AT_rich Low_complexity Low_complexity 1 24 0 6 1423 774 322 153 5 chr6 109966335 109966713 -39550324 + MLT-int LTR MaLR 1302 1735 0 6 1423 370 257 120 55 chr6 109966784 109967076 -39549961 + L1M4 LINE L1 2570 2880 -3266 6 1423 403 230 47 47 chr6 109967141 109967269 -39549768 + MER2 DNA MER2_type 98 225 -120 6 1423 529 305 141 55 chr6 109967380 109967692 -39549345 + MLT1A0 LTR MaLR 25 363 -2 6 1423 196 398 23 54 chr6 109967730 109967860 -39549177 + MER5A DNA MER1_type 42 167 -22 6 1423 427 299 19 83 chr6 109968039 109968196 -39548841 - B4A SINE B4 -145 147 1 6 177 257 318 10 10 chr6 109969353 109969554 -39547483 + CT-rich Low_complexity Low_complexity 1 201 0 6 1424 477 0 0 0 chr6 109971240 109971293 -39545744 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1424 548 313 118 34 chr6 109971347 109971703 -39545334 + MTD LTR MaLR 6 365 -14 6 1424 290 323 22 22 chr6 109971876 109972012 -39545025 + MLT1A0 LTR MaLR 19 154 -211 6 1424 242 236 36 0 chr6 109972714 109972769 -39544268 - MLT1A1 LTR MaLR -52 356 300 6 1424 731 337 30 42 chr6 109973126 109973532 -39543505 + RLTR17 LTR ERVK 116 516 -176 6 1424 536 260 19 68 chr6 109973565 109973726 -39543311 + RLTR31_Mur LTR ERVK 401 553 0 6 1424 297 302 45 51 chr6 109973920 109974077 -39542960 + RMER15 LTR ERVL 380 535 -40 6 1424 252 0 0 0 chr6 109974326 109974354 -39542683 + (TAA)n Simple_repeat Simple_repeat 3 30 0 6 1424 21 0 0 0 chr6 109974407 109974428 -39542609 + AT_rich Low_complexity Low_complexity 1 21 0 7 1424 549 42 0 0 chr6 109974452 109974524 -39542513 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1424 414 0 0 0 chr6 109974524 109974569 -39542468 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1424 240 35 0 0 chr6 109976354 109976383 -39540654 + (ATTAG)n Simple_repeat Simple_repeat 2 30 0 7 1424 258 56 0 0 chr6 109977123 109977159 -39539878 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1424 405 0 0 0 chr6 109977427 109977472 -39539565 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1424 198 0 0 0 chr6 109977749 109977771 -39539266 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 7 1424 503 342 20 0 chr6 109977803 109977955 -39539082 - RSINE1 SINE B4 -1 164 10 7 1424 2037 102 3 16 chr6 109978171 109978481 -39538556 - L1Md_F2 LINE L1 -2 6580 6275 7 1424 305 66 145 16 chr6 109978481 109978538 -39538499 + MusHAL1 LINE L1 206 271 -2441 7 1424 396 356 15 8 chr6 109978559 109978689 -39538348 - B3 SINE B2 -85 131 1 7 1424 21 36 0 0 chr6 109978692 109978720 -39538317 + AT_rich Low_complexity Low_complexity 1 28 0 7 1424 219 204 0 0 chr6 109979016 109979070 -39537967 + A-rich Low_complexity Low_complexity 1 54 0 7 1424 517 239 26 0 chr6 109979133 109979246 -39537791 + Lx8 LINE L1 6818 6933 -540 7 1424 536 318 8 0 chr6 109979967 109980099 -39536938 - B1F1 SINE Alu -11 138 6 7 1424 573 165 0 0 chr6 109980860 109980981 -39536056 + (CA)n Simple_repeat Simple_repeat 2 122 0 7 1424 822 289 29 10 chr6 109981296 109981502 -39535535 + B3 SINE B2 6 215 -1 7 1424 468 0 0 0 chr6 109983978 109984030 -39533007 + (GA)n Simple_repeat Simple_repeat 2 53 0 7 1424 226 171 24 0 chr6 109984051 109984092 -39532945 - RSINE1 SINE B4 -118 47 6 7 1424 305 121 0 108 chr6 109984514 109984579 -39532458 - HAL1-3A_ME LINE L1 -830 2028 1971 7 1424 405 0 0 0 chr6 109984597 109984642 -39532395 + (TATG)n Simple_repeat Simple_repeat 2 46 0 7 1424 282 40 59 20 chr6 109984650 109984701 -39532336 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1424 518 224 17 17 chr6 109984701 109984819 -39532218 - B4A SINE B4 0 292 175 7 1424 329 316 93 13 chr6 109985157 109985308 -39531729 - B4A SINE B4 -125 167 5 7 1424 21 36 0 0 chr6 109985445 109985473 -39531564 + AT_rich Low_complexity Low_complexity 1 28 0 7 1424 7874 83 37 3 chr6 109985530 109986636 -39530401 + L1Md_F2 LINE L1 4443 5586 -297 7 1424 7127 74 20 6 chr6 109986636 109987600 -39529437 + L1Md_F2 LINE L1 5587 6563 -19 7 1424 1035 84 0 0 chr6 109987655 109987798 -39529239 + (GAA)n Simple_repeat Simple_repeat 2 144 0 7 1424 306 167 0 0 chr6 109988158 109988218 -39528819 + T-rich Low_complexity Low_complexity 1 60 0 7 1424 827 60 78 0 chr6 109988910 109989051 -39527986 - L1_Mus2 LINE L1 0 6566 6433 7 1424 651 13 0 0 chr6 109989627 109989703 -39527334 + (TA)n Simple_repeat Simple_repeat 2 77 0 7 1424 5007 133 23 71 chr6 109990586 109991538 -39525499 - RMER17A2 LTR ERVK 0 906 1 7 1424 453 312 102 48 chr6 109991885 109992198 -39524839 + LTR50 LTR ERVL 374 703 -92 7 1424 693 66 0 0 chr6 109993107 109993198 -39523839 + (TC)n Simple_repeat Simple_repeat 2 92 0 7 1424 249 324 14 0 chr6 109993216 109993290 -39523747 - ID4_ SINE ID -3 80 6 7 1424 645 76 29 0 chr6 109993479 109993584 -39523453 + (TA)n Simple_repeat Simple_repeat 2 109 0 7 1424 300 267 82 0 chr6 109993722 109993857 -39523180 + L1M4 LINE L1 3133 3278 -2868 7 1424 252 350 113 36 chr6 109993999 109994221 -39522816 - MLT1C LTR MaLR -102 365 127 7 1424 2213 238 183 47 chr6 109994680 109995540 -39521497 + RMER1B Other Other 51 1064 -2 7 1424 348 350 88 47 chr6 109995714 109995885 -39521152 + B4A SINE B4 2 179 -113 7 1424 227 286 52 52 chr6 109995809 109995905 -39521132 + PB1D10 SINE Alu 22 117 0 7 1424 405 0 0 0 chr6 109995963 109996008 -39521029 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1424 261 361 0 0 chr6 109997225 109997297 -39519740 + B3A SINE B2 86 157 -41 7 1424 200 111 28 0 chr6 109997303 109997339 -39519698 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1424 567 0 0 0 chr6 109997339 109997401 -39519636 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1424 217 289 0 0 chr6 109997906 109997958 -39519079 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1424 2076 44 0 0 chr6 109999748 110000000 -39517037 - L1Md_A LINE L1 0 6582 6331 7 1424 5265 34 0 0 chr6 110000000 110000623 -39516414 - L1Md_T LINE L1 -252 6330 5708 1 1424 11819 20 0 0 chr6 110000618 110001986 -39515051 + L1Md_T LINE L1 4326 5693 -190 1 1424 330 292 98 106 chr6 110002992 110003474 -39513563 + RMER20B LTR ERVK 1 477 -39 2 1424 493 260 9 0 chr6 110003582 110003713 -39513324 - L1Md_F LINE L1 -5860 864 705 3 1424 7079 80 22 17 chr6 110003722 110005058 -39511979 + L1_Mus2 LINE L1 5221 6563 -3 4 1424 252 0 0 0 chr6 110005073 110005101 -39511936 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1424 180 0 0 0 chr6 110006227 110006247 -39510790 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1424 735 179 0 0 chr6 110006344 110006484 -39510553 + (TA)n Simple_repeat Simple_repeat 1 140 0 7 1424 306 164 0 0 chr6 110006970 110007025 -39510012 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1424 518 0 16 0 chr6 110007025 110007087 -39509950 + (GA)n Simple_repeat Simple_repeat 1 63 0 9 1424 838 112 14 14 chr6 110008689 110008834 -39508203 + L1_Mus3 LINE L1 6485 6629 -9 1 1424 1467 175 98 10 chr6 110009469 110009764 -39507273 - ORR1B2 LTR MaLR -1 366 46 1 1424 982 85 6 6 chr6 110010074 110010239 -39506798 + (TC)n Simple_repeat Simple_repeat 2 166 0 1 1424 256 317 22 111 chr6 110010244 110010379 -39506658 - RLTR8 LTR ERVK 0 365 243 1 1424 403 362 0 102 chr6 110010718 110010830 -39506207 - B1F SINE Alu 0 149 50 1 1424 228 35 0 0 chr6 110010830 110010859 -39506178 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1424 1315 58 6 0 chr6 110010859 110011033 -39506004 - L1Md_F2 LINE L1 -15 6567 6393 1 1424 403 362 0 102 chr6 110011033 110011085 -39505952 - B1F SINE Alu -100 49 2 1 1424 27 62 0 0 chr6 110011166 110011214 -39505823 + AT_rich Low_complexity Low_complexity 1 48 0 1 1424 361 373 30 65 chr6 110011233 110011402 -39505635 - RSINE1 SINE B4 0 165 3 1 1424 1233 263 67 38 chr6 110011481 110011872 -39505165 + MTD LTR MaLR 3 404 -15 1 1424 21 36 0 0 chr6 110012000 110012028 -39505009 + AT_rich Low_complexity Low_complexity 1 28 0 2 1424 300 353 165 19 chr6 110012261 110012781 -39504256 + L1MC4a LINE L1 5336 5931 -1951 2 1424 187 371 64 7 chr6 110013804 110013945 -39503092 + L2a LINE L2 3268 3416 -10 2 1424 265 359 65 26 chr6 110014618 110014847 -39502190 - L2a LINE L2 -5 3421 3184 2 1424 203 308 116 44 chr6 110015299 110015574 -39501463 - L2a LINE L2 -1225 2194 1900 2 1424 210 224 0 0 chr6 110015579 110015628 -39501409 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1424 23 33 0 0 chr6 110015628 110015658 -39501379 + AT_rich Low_complexity Low_complexity 1 30 0 2 1424 247 319 201 42 chr6 110015740 110015884 -39501153 + MLT1A0 LTR MaLR 197 363 -2 2 1424 428 311 19 68 chr6 110015924 110016086 -39500951 - B4A SINE B4 -100 192 39 2 1424 235 293 0 0 chr6 110016181 110016239 -39500798 - RMER30 DNA MER1_type -12 190 133 2 1424 675 80 9 65 chr6 110016595 110016702 -39500335 + B1_Mus1 SINE Alu 33 133 -15 2 1424 296 305 73 59 chr6 110016793 110016929 -39500108 - MER58A DNA MER1_type -15 209 72 3 1424 917 140 6 0 chr6 110016943 110017107 -39499930 + (TC)n Simple_repeat Simple_repeat 2 166 0 3 1424 317 299 0 0 chr6 110017107 110017194 -39499843 + CT-rich Low_complexity Low_complexity 1 87 0 3 1424 513 315 0 20 chr6 110017194 110017340 -39499697 - B1_Mur1 SINE Alu -2 147 5 3 1424 697 298 112 36 chr6 110017452 110017783 -39499254 + MLT1A0 LTR MaLR 8 363 -2 3 1424 606 265 108 101 chr6 110017804 110018166 -39498871 + MTD LTR MaLR 1 369 -31 3 1424 417 20 0 0 chr6 110019661 110019711 -39497326 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1424 28 0 0 0 chr6 110019859 110019887 -39497150 + AT_rich Low_complexity Low_complexity 1 28 0 3 1424 2633 252 48 1 chr6 110019946 110020628 -39496409 + Lx6 LINE L1 6729 7454 -6 3 1424 22 0 0 0 chr6 110020630 110020652 -39496385 + AT_rich Low_complexity Low_complexity 1 22 0 3 1424 1944 65 31 0 chr6 110021038 110021298 -39495739 - L1_Mus1 LINE L1 -1 6566 6299 4 1424 290 270 96 39 chr6 110023891 110023995 -39493042 + B3 SINE B2 100 209 -7 4 1424 213 222 0 0 chr6 110024155 110024209 -39492828 + T-rich Low_complexity Low_complexity 1 54 0 4 1424 1314 232 30 7 chr6 110024312 110024607 -39492430 - Lx3C LINE L1 -2 6974 6673 4 1424 324 338 25 19 chr6 110024622 110024779 -39492258 - L1MA10 LINE L1 -8 6326 6169 4 1424 21 36 0 0 chr6 110024788 110024816 -39492221 + AT_rich Low_complexity Low_complexity 1 28 0 4 1424 704 301 90 45 chr6 110024912 110026040 -39490997 - L1MB1 LINE L1 -236 5953 4765 4 1424 429 20 0 0 chr6 110026143 110026193 -39490844 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1424 1388 249 60 47 chr6 110026270 110026700 -39490337 - Lx9 LINE L1 -498 7146 6711 4 1424 347 236 34 27 chr6 110026739 110026887 -39490150 - L1MB1 LINE L1 -1644 4496 4348 4 1424 22 0 0 0 chr6 110027134 110027156 -39489881 + AT_rich Low_complexity Low_complexity 1 22 0 4 1424 468 0 0 0 chr6 110027249 110027301 -39489736 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1424 27 0 0 0 chr6 110028141 110028168 -39488869 + AT_rich Low_complexity Low_complexity 1 27 0 5 1424 196 53 53 0 chr6 110029346 110029384 -39487653 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 1424 205 133 0 43 chr6 110029808 110029855 -39487182 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 5 1424 352 205 26 0 chr6 110030317 110030395 -39486642 - Lx5 LINE L1 -1180 5870 5791 5 1424 472 175 0 52 chr6 110030382 110030496 -39486541 + Lx2B LINE L1 5701 5813 -1187 5 1424 1379 39 22 6 chr6 110032139 110032322 -39484715 - L1Md_F3 LINE L1 -2 6582 6397 5 1424 1701 72 5 0 chr6 110032332 110032555 -39484482 - L1_Mus1 LINE L1 -1 6566 6343 5 1424 219 347 0 0 chr6 110032692 110032787 -39484250 + (TA)n Simple_repeat Simple_repeat 2 96 0 5 1424 500 279 85 50 chr6 110032911 110033171 -39483866 + Charlie7 DNA MER1_type 1723 1991 -621 5 1424 480 128 0 0 chr6 110033411 110033489 -39483548 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 1424 546 63 0 0 chr6 110033873 110033952 -39483085 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1424 1093 85 0 0 chr6 110033954 110034095 -39482942 - B1_Mus2 SINE Alu -6 141 1 6 1424 255 250 47 59 chr6 110035236 110035321 -39481716 - ORR1E LTR MaLR -285 89 6 6 1424 36173 44 2 4 chr6 110036430 110041400 -39475637 + L1Md_A LINE L1 632 5586 -297 6 1424 8957 6 0 0 chr6 110041400 110042396 -39474641 + L1Md_A LINE L1 5587 6582 0 6 1424 21549 71 2 0 chr6 110042402 110045272 -39471765 + L1Md_F2 LINE L1 2711 5585 -298 6 1424 7810 61 2 1 chr6 110045273 110046256 -39470781 + L1Md_F2 LINE L1 5587 6570 -12 6 1424 741 298 14 9 chr6 110046259 110046469 -39470568 - B3 SINE B2 -5 211 1 6 1424 270 361 57 25 chr6 110046797 110046919 -39470118 + MER2 DNA MER2_type 8 133 -212 6 1424 333 50 17 0 chr6 110047784 110047844 -39469193 + L1Md_F3 LINE L1 6523 6583 -1 6 1424 267 261 149 42 chr6 110047945 110048113 -39468924 - Lx8 LINE L1 -3 7470 7285 6 1424 24 0 0 0 chr6 110048516 110048540 -39468497 + AT_rich Low_complexity Low_complexity 1 24 0 7 1424 279 296 50 30 chr6 110048670 110048771 -39468266 - MLT1K LTR MaLR -22 573 471 7 1424 193 323 16 0 chr6 110049079 110049141 -39467896 - L3 LINE CR1 -837 3652 3590 7 1424 929 92 24 18 chr6 110049260 110049426 -39467611 + Lx LINE L1 6486 6652 -2 7 1424 183 139 0 0 chr6 110050050 110050086 -39466951 + (TA)n Simple_repeat Simple_repeat 1 36 0 7 1424 659 173 85 16 chr6 110050377 110050506 -39466531 - B1_Mur3 SINE Alu -10 139 2 7 1424 6344 201 30 34 chr6 110050697 110052015 -39465022 - Lx5 LINE L1 -9 7041 5729 7 1424 196 30 29 29 chr6 110052016 110052050 -39464987 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1424 651 111 10 0 chr6 110052053 110052152 -39464885 - B1_Mm SINE Alu -5 142 43 7 1424 760 201 13 0 chr6 110052155 110052309 -39464728 - Lx5 LINE L1 -1308 5742 5587 7 1424 6146 88 6 6 chr6 110052308 110053152 -39463885 + L1_Mus1 LINE L1 5723 6566 -1 7 1424 465 50 0 0 chr6 110053556 110053616 -39463421 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1424 11600 214 71 32 chr6 110053652 110056948 -39460089 - Lx5 LINE L1 -284 5593 2170 7 1424 2687 58 3 0 chr6 110056948 110057292 -39459745 - L1Md_F2 LINE L1 -12 6570 6226 8 1424 8983 195 34 8 chr6 110057292 110057390 -39459647 - Lx5 LINE L1 -3708 2169 2075 7 1424 567 43 0 0 chr6 110057390 110057460 -39459577 + (TGG)n Simple_repeat Simple_repeat 1 70 0 8 1424 387 0 0 0 chr6 110057462 110057505 -39459532 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1424 8983 186 29 6 chr6 110057505 110058439 -39458598 - Lx5 LINE L1 -3803 2074 1108 7 1424 22 35 0 0 chr6 110058439 110058468 -39458569 + AT_rich Low_complexity Low_complexity 1 29 0 8 1424 617 147 9 0 chr6 110058593 110058709 -39458328 - Lx LINE L1 -2 6652 6536 8 1424 734 221 103 5 chr6 110058709 110058923 -39458114 - Lx5 LINE L1 -5970 1116 882 7 1424 319 280 65 0 chr6 110059299 110059392 -39457645 - B3 SINE B2 0 216 118 8 1424 3000 190 65 103 chr6 110059539 110060447 -39456590 - RMER17D LTR ERVK -16 873 1 8 1424 1162 98 6 0 chr6 110061320 110061493 -39455544 - L1Md_F2 LINE L1 -2 6580 6407 8 1424 21 0 0 0 chr6 110061562 110061583 -39455454 + AT_rich Low_complexity Low_complexity 1 21 0 8 1424 393 22 0 0 chr6 110061646 110061692 -39455345 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1424 311 0 0 25 chr6 110062567 110062607 -39454430 + (TTA)n Simple_repeat Simple_repeat 2 40 0 9 1424 222 136 23 0 chr6 110063443 110063487 -39453550 + A-rich Low_complexity Low_complexity 4 48 0 9 1424 308 368 61 6 chr6 110063551 110063715 -39453322 + MIR SINE MIR 76 248 -14 9 1424 180 0 0 0 chr6 110064442 110064462 -39452575 + (TC)n Simple_repeat Simple_repeat 1 20 0 9 1424 191 358 87 7 chr6 110064796 110064945 -39452092 + MIRb SINE MIR 20 180 -88 9 1424 327 341 56 17 chr6 110065111 110065290 -39451747 + L1MDa LINE L1 181 366 -6267 9 1424 7112 136 16 10 chr6 110065506 110067185 -39449852 - Lx LINE L1 0 6654 4966 9 1424 1957 230 53 51 chr6 110067504 110068013 -39449024 - RLTR18B LTR ERVK 0 512 3 9 1424 259 237 86 0 chr6 110068599 110068692 -39448345 + L1MDa LINE L1 1170 1270 -5363 9 1424 756 301 75 29 chr6 110069066 110069452 -39447585 + Lx8 LINE L1 7040 7443 -30 9 1424 1596 256 24 17 chr6 110070436 110070846 -39446191 + MTD LTR MaLR 1 413 -6 1 1424 219 36 0 0 chr6 110070852 110070880 -39446157 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1424 529 248 70 94 chr6 110071390 110071630 -39445407 + ORR1C2 LTR MaLR 23 259 -115 1 1424 231 270 241 9 chr6 110071671 110071783 -39445254 + ORR1C2 LTR MaLR 158 295 -79 1 1424 716 124 82 8 chr6 110071789 110071911 -39445126 + B1_Mm SINE Alu 5 135 -12 1 1424 396 0 0 0 chr6 110071912 110071956 -39445081 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1424 536 73 12 0 chr6 110071956 110072038 -39444999 + (CAACC)n Simple_repeat Simple_repeat 1 83 0 1 1424 227 29 57 0 chr6 110072042 110072077 -39444960 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1424 417 183 18 0 chr6 110072090 110072176 -39444861 + ORR1D1 LTR MaLR 236 372 -2 1 1424 423 0 0 0 chr6 110072264 110072311 -39444726 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1424 252 137 0 0 chr6 110072507 110072558 -39444479 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 1 1424 240 152 66 33 chr6 110073437 110073498 -39443539 + CT-rich Low_complexity Low_complexity 2 64 0 1 1424 180 77 0 0 chr6 110073834 110073860 -39443177 + (CATG)n Simple_repeat Simple_repeat 1 26 0 1 1424 2178 195 48 48 chr6 110073981 110074486 -39442551 - RLTR12B LTR ERVK -7 521 17 1 1424 1604 167 4 15 chr6 110074699 110074966 -39442071 - Lx4A LINE L1 -49 7009 6746 1 1424 1037 132 6 0 chr6 110074969 110075135 -39441902 + Lx4A LINE L1 5674 5840 -1218 1 1424 6073 49 17 1 chr6 110075212 110075973 -39441064 + L1Md_F2 LINE L1 5797 6569 -13 1 1424 4264 141 42 50 chr6 110076590 110077394 -39439643 + Lx3B LINE L1 6176 6973 0 1 1424 449 272 9 17 chr6 110077544 110077660 -39439377 + RSINE1 SINE B4 3 117 -48 1 1424 630 49 0 0 chr6 110077667 110077749 -39439288 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 1424 889 287 0 34 chr6 110078239 110078448 -39438589 - B3 SINE B2 -6 210 9 1 1424 1223 101 45 0 chr6 110079795 110079973 -39437064 + B2_Mm2 SINE B2 2 187 -8 1 1424 488 191 9 0 chr6 110080371 110080481 -39436556 + Lx9 LINE L1 7516 7626 -18 1 1424 21 36 0 0 chr6 110080553 110080581 -39436456 + AT_rich Low_complexity Low_complexity 1 28 0 1 1424 600 306 14 0 chr6 110081146 110081290 -39435747 - B1F2 SINE Alu -2 147 2 1 1424 660 305 71 0 chr6 110081438 110081635 -39435402 + B3 SINE B2 1 211 -5 1 1424 360 0 0 0 chr6 110081690 110081730 -39435307 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1424 23 54 0 0 chr6 110082663 110082700 -39434337 + AT_rich Low_complexity Low_complexity 1 37 0 1 1424 450 238 86 26 chr6 110082742 110082893 -39434144 - Lx5 LINE L1 -1 7049 6890 1 1424 1114 88 0 0 chr6 110084028 110084176 -39432861 + B1_Mus1 SINE Alu 1 148 0 1 1424 377 321 94 40 chr6 110084222 110084482 -39432555 - MLT2B2 LTR ERVL -14 548 242 1 1424 497 264 49 8 chr6 110085009 110085131 -39431906 - ETnERV2-int LTR ERVK -210 7196 7070 1 1424 428 352 77 0 chr6 110089341 110089523 -39427514 - MLT1F2 LTR MaLR -232 328 133 1 1424 30 27 0 0 chr6 110091892 110091929 -39425108 + AT_rich Low_complexity Low_complexity 1 37 0 1 1424 189 0 0 0 chr6 110092020 110092041 -39424996 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1424 374 346 30 8 chr6 110092081 110092212 -39424825 - B1F1 SINE Alu -1 148 15 1 1424 21 36 0 0 chr6 110093269 110093297 -39423740 + AT_rich Low_complexity Low_complexity 1 28 0 1 1424 2223 199 123 40 chr6 110093311 110093372 -39423665 - RMER15 LTR ERVL -1 574 514 1 1424 1646 242 55 17 chr6 110093372 110093776 -39423261 + MTC LTR MaLR 1 419 -2 1 1424 2223 199 123 40 chr6 110093776 110094242 -39422795 - RMER15 LTR ERVL -62 513 3 1 1424 358 340 40 0 chr6 110094313 110094413 -39422624 + PB1D10 SINE Alu 1 104 -13 1 1424 220 0 56 28 chr6 110094452 110094488 -39422549 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 1 1424 493 315 16 16 chr6 110094495 110094624 -39422413 + RSINE1 SINE B4 2 130 -35 1 1424 207 100 0 0 chr6 110094643 110094673 -39422364 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1424 715 242 78 29 chr6 110095666 110095870 -39421167 - B3 SINE B2 -2 214 1 1 1424 216 360 25 38 chr6 110097217 110097376 -39419661 - MIRb SINE MIR -36 232 76 1 1424 1936 166 6 0 chr6 110097488 110097814 -39419223 + RLTR28 LTR ERVL 2 329 -195 1 1424 558 335 83 30 chr6 110097852 110098117 -39418920 + MLT1A0 LTR MaLR 1 279 -86 1 1424 493 362 198 33 chr6 110098790 110099637 -39417400 - L2 LINE L2 -461 2958 1972 1 1424 439 198 8 25 chr6 110099915 110099995 -39417042 + polypyrimidine Low_complexity Low_complexity 38 118 0 1 1424 1099 107 11 6 chr6 110099995 110100173 -39416864 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1424 439 198 8 25 chr6 110100173 110100211 -39416826 + polypyrimidine Low_complexity Low_complexity 2 37 0 1 1424 1115 112 6 0 chr6 110100217 110100396 -39416641 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1425 423 0 0 0 chr6 110100549 110100596 -39416441 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1425 1437 221 10 47 chr6 110100653 110100672 -39416365 + RLTR20B1 LTR ERVK 1 12 -551 1 1425 1543 185 134 36 chr6 110100672 110101059 -39415978 + RLTR23 LTR ERV1 5 429 -1 1 1425 1437 226 17 45 chr6 110101059 110101366 -39415671 + RLTR20B1 LTR ERVK 13 309 -232 1 1425 395 297 20 0 chr6 110101383 110101484 -39415553 - Lx8 LINE L1 -207 7266 7164 1 1425 752 224 27 30 chr6 110102044 110102241 -39414796 - RLTR20B1 LTR ERVK -258 319 121 1 1425 634 273 14 0 chr6 110103324 110103463 -39413574 + B1_Mur1 SINE Alu 4 144 -5 1 1425 22439 158 23 31 chr6 110103596 110107423 -39409614 - L1_Mus4 LINE L1 -6 6630 2873 1 1425 1073 121 0 6 chr6 110107423 110107598 -39409439 + (TTTC)n Simple_repeat Simple_repeat 4 177 0 1 1425 22439 162 23 26 chr6 110107598 110110089 -39406948 - L1_Mus4 LINE L1 -3011 2872 357 1 1425 30 27 0 0 chr6 110110432 110110469 -39406568 + AT_rich Low_complexity Low_complexity 1 37 0 1 1425 210 37 0 0 chr6 110110997 110111024 -39406013 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1425 267 31 0 0 chr6 110111583 110111615 -39405422 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1 1425 450 298 0 9 chr6 110111706 110111821 -39405216 + RSINE1 SINE B4 5 118 -47 1 1425 375 41 0 0 chr6 110111860 110111909 -39405128 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1425 180 0 0 0 chr6 110111909 110111928 -39405109 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1425 634 182 9 9 chr6 110112211 110112322 -39404715 + RMER6D LTR ERVK 1 111 -609 1 1425 1369 209 36 33 chr6 110112328 110112665 -39404372 - RLTR15 LTR ERVK 0 359 22 1 1425 1540 213 68 109 chr6 110112602 110113154 -39403883 + RMER6D LTR ERVK 101 615 -141 1 1425 204 40 0 0 chr6 110113154 110113179 -39403858 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1425 1116 245 69 140 chr6 110113179 110113248 -39403789 + RMER6D LTR ERVK 616 677 -79 1 1425 2544 123 31 14 chr6 110113453 110113872 -39403165 + Lx LINE L1 6229 6654 0 1 1425 386 263 34 8 chr6 110114021 110114140 -39402897 + LSU-rRNA_Hsa rRNA rRNA 4179 4300 -735 1 1425 512 165 0 99 chr6 110114149 110114270 -39402767 - MYSERV6-int LTR ERVK -855 2383 2275 1 1425 789 172 26 27 chr6 110114855 110115032 -39402005 - MYSERV6-int LTR ERVK -285 8674 8518 1 1425 542 70 43 26 chr6 110115040 110115157 -39401880 + (CAAAAA)n Simple_repeat Simple_repeat 2 120 0 1 1425 1032 115 0 0 chr6 110115387 110115535 -39401502 - B1_Mus1 SINE Alu 0 148 1 1 1425 1228 275 30 35 chr6 110116299 110116668 -39400369 - Lx9 LINE L1 -378 7266 6900 1 1425 812 226 80 60 chr6 110116663 110117012 -39400025 + Lx9 LINE L1 7288 7643 -1 1 1425 476 346 124 19 chr6 110117569 110117778 -39399259 - B4A SINE B4 -44 248 18 1 1425 183 42 0 0 chr6 110118348 110118372 -39398665 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1425 234 128 0 0 chr6 110118377 110118416 -39398621 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1425 231 391 29 36 chr6 110118801 110118939 -39398098 + Helitron3Na_Mam RC Helitron 279 415 -71 1 1425 773 21 11 0 chr6 110119195 110119290 -39397747 + (GA)n Simple_repeat Simple_repeat 2 97 0 1 1425 1325 237 124 19 chr6 110119368 110119628 -39397409 + MTD LTR MaLR 2 277 -142 1 1425 210 37 0 0 chr6 110119628 110119655 -39397382 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 1425 1325 237 124 19 chr6 110119655 110119772 -39397265 + MTD LTR MaLR 278 418 -1 1 1425 21 36 0 0 chr6 110120011 110120039 -39396998 + AT_rich Low_complexity Low_complexity 1 28 0 1 1425 25 51 0 0 chr6 110120137 110120176 -39396861 + AT_rich Low_complexity Low_complexity 1 39 0 1 1425 378 0 0 0 chr6 110120214 110120256 -39396781 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1425 246 271 47 0 chr6 110120341 110120426 -39396611 + MTE2a LTR MaLR 291 379 0 1 1425 28 61 0 0 chr6 110121640 110121689 -39395348 + AT_rich Low_complexity Low_complexity 1 49 0 1 1425 2488 70 0 18 chr6 110122626 110122962 -39394075 + L1Md_F2 LINE L1 6248 6577 -5 1 1425 302 381 51 70 chr6 110123461 110123619 -39393418 + B4A SINE B4 104 258 -34 1 1425 243 322 0 11 chr6 110123665 110123756 -39393281 + (CA)n Simple_repeat Simple_repeat 1 90 0 1 1425 633 61 0 0 chr6 110124224 110124306 -39392731 + (TC)n Simple_repeat Simple_repeat 1 82 0 1 1425 295 365 95 45 chr6 110124476 110124697 -39392340 - B4A SINE B4 -46 246 15 1 1425 324 328 5 75 chr6 110126254 110126455 -39390582 + B3A SINE B2 2 188 -10 1 1425 7969 107 4 3 chr6 110126560 110127435 -39389602 + Lx3A LINE L1 5042 5916 -1065 1 1425 280 59 39 0 chr6 110127435 110127486 -39389551 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1 1425 7969 127 80 2 chr6 110127486 110128453 -39388584 + Lx3A LINE L1 5917 6981 0 1 1425 206 121 0 0 chr6 110128454 110128487 -39388550 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1425 237 184 20 0 chr6 110129517 110129566 -39387471 + L1MEg LINE L1 674 723 -5361 1 1425 971 320 120 13 chr6 110129598 110130048 -39386989 + Lx8 LINE L1 6973 7470 -3 1 1425 235 371 0 33 chr6 110130148 110130240 -39386797 + ID_B1 SINE B4 79 167 -57 1 1425 307 340 40 30 chr6 110130158 110130258 -39386779 + PB1D10 SINE Alu 8 108 -9 1 1425 398 308 39 79 chr6 110130291 110130545 -39386492 + L1MCa LINE L1 963 1206 -5302 1 1425 231 36 0 0 chr6 110130590 110130618 -39386419 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1425 1404 321 113 17 chr6 110130860 110131575 -39385462 + Lx8 LINE L1 6685 7468 -5 2 1425 24 32 0 0 chr6 110132692 110132723 -39384314 + AT_rich Low_complexity Low_complexity 1 31 0 2 1425 226 222 0 0 chr6 110132851 110132896 -39384141 + GA-rich Low_complexity Low_complexity 2 46 0 2 1425 1635 156 0 0 chr6 110132910 110133173 -39383864 + L1Md_F LINE L1 354 616 -6000 2 1425 3599 85 0 0 chr6 110133171 110133677 -39383360 + L1Md_F LINE L1 2855 3360 -2523 2 1425 5200 86 20 20 chr6 110133678 110134241 -39382796 + L1Md_F2 LINE L1 5812 6368 -214 2 1425 306 0 0 0 chr6 110134241 110134275 -39382762 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1425 5200 86 20 20 chr6 110134275 110134470 -39382567 + L1Md_F2 LINE L1 6369 6570 -12 2 1425 704 334 50 28 chr6 110134470 110134793 -39382244 - MLT2D LTR ERVL -65 332 3 2 1425 1022 349 40 21 chr6 110135774 110136243 -39380794 - Lx8 LINE L1 -169 7304 6827 2 1425 1812 317 69 23 chr6 110136247 110137058 -39379979 + Lx8 LINE L1 6069 6916 -557 2 1425 687 185 38 38 chr6 110137244 110137401 -39379636 + URR1A DNA MER1_type 68 224 -2 2 1425 707 362 45 15 chr6 110138186 110138450 -39378587 + B4A SINE B4 2 273 -19 2 1425 223 181 14 14 chr6 110139005 110139078 -39377959 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1425 717 134 0 63 chr6 110139071 110139262 -39377775 + (TA)n Simple_repeat Simple_repeat 1 179 0 2 1425 742 266 49 20 chr6 110139569 110139772 -39377265 + B3 SINE B2 2 210 -6 2 1425 288 0 0 0 chr6 110139776 110139808 -39377229 + (ATG)n Simple_repeat Simple_repeat 2 33 0 2 1425 459 0 0 0 chr6 110140100 110140151 -39376886 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 2 1425 918 180 0 0 chr6 110140151 110140329 -39376708 + GA-rich Low_complexity Low_complexity 1 178 0 2 1425 1086 71 0 7 chr6 110140568 110140710 -39376327 + B1_Mm SINE Alu 1 141 -6 2 1425 1049 131 0 6 chr6 110140715 110140892 -39376145 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 2 1425 8070 37 13 0 chr6 110140894 110141875 -39375162 + L1Md_F2 LINE L1 5588 6581 -1 2 1425 1298 60 5 0 chr6 110141880 110142096 -39374941 + (GAAA)n Simple_repeat Simple_repeat 1 216 0 2 1425 916 109 65 0 chr6 110142101 110142239 -39374798 + B1_Mus2 SINE Alu 1 147 0 2 1425 342 302 204 11 chr6 110142286 110142467 -39374570 + B3 SINE B2 1 216 0 2 1425 1206 74 0 0 chr6 110143346 110143508 -39373529 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 2 1425 287 319 74 25 chr6 110143701 110143823 -39373214 + MER5B DNA MER1_type 1 128 -50 2 1425 1173 190 7 3 chr6 110144134 110144337 -39372700 + MTC LTR MaLR 1 192 -229 2 1425 7135 123 12 9 chr6 110144337 110146318 -39370719 + L1_Mus3 LINE L1 4785 6638 0 2 1425 797 199 61 56 chr6 110146318 110146430 -39370607 + MTC LTR MaLR 207 316 -105 2 1425 189 0 0 0 chr6 110146430 110146451 -39370586 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1425 797 199 61 56 chr6 110146451 110146535 -39370502 + MTC LTR MaLR 317 403 -18 2 1425 193 256 0 0 chr6 110148141 110148180 -39368857 + L3 LINE CR1 3502 3540 -949 2 1425 748 58 0 0 chr6 110149193 110149297 -39367740 + L1_Mus1 LINE L1 6461 6564 -3 2 1425 324 0 0 0 chr6 110149297 110149333 -39367704 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 2 1425 556 111 0 0 chr6 110149735 110149816 -39367221 + RLTR45 LTR ERVK 1 81 -401 2 1425 1028 191 63 3 chr6 110149805 110150035 -39367002 + RLTR45 LTR ERVK 193 482 0 2 1425 180 354 47 35 chr6 110150285 110150370 -39366667 + MIRb SINE MIR 44 129 -139 2 1425 327 104 0 0 chr6 110150645 110150693 -39366344 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1425 462 44 15 0 chr6 110151185 110151253 -39365784 + L1Md_F2 LINE L1 6512 6580 -2 2 1425 5378 77 0 1 chr6 110151248 110151953 -39365084 + L1_Mus1 LINE L1 5862 6565 -2 2 1425 23 54 0 0 chr6 110152347 110152384 -39364653 + AT_rich Low_complexity Low_complexity 1 37 0 2 1425 729 24 0 0 chr6 110153502 110153587 -39363450 - L1Md_F2 LINE L1 -511 6071 5987 2 1425 3931 51 8 4 chr6 110153588 110154084 -39362953 + L1Md_F2 LINE L1 6085 6582 0 2 1425 1041 231 209 70 chr6 110154355 110154839 -39362198 - RLTR20A1 LTR ERVK 0 551 1 2 1425 440 176 19 0 chr6 110154966 110155056 -39361981 - MTE2b LTR MaLR -283 96 1 2 1425 416 67 17 0 chr6 110156355 110156415 -39360622 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1425 788 300 0 35 chr6 110156948 110157145 -39359892 + B4 SINE B4 2 191 -101 2 1425 485 283 110 132 chr6 110157153 110157238 -39359799 - B4 SINE B4 -8 284 216 2 1425 944 298 21 14 chr6 110157238 110157521 -39359516 - B4A SINE B4 -7 285 1 2 1425 485 283 110 132 chr6 110157521 110157708 -39359329 - B4 SINE B4 -77 215 18 2 1425 1212 218 0 0 chr6 110157725 110157945 -39359092 + URR1B DNA MER1_type 1 220 -5 2 1425 324 0 0 0 chr6 110158558 110158594 -39358443 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 2 1425 479 194 16 16 chr6 110158595 110158721 -39358316 - Lx4B LINE L1 -20 7038 6913 2 1425 216 217 63 48 chr6 110158722 110158785 -39358252 - B4A SINE B4 -224 68 5 2 1425 2461 183 17 19 chr6 110158785 110159263 -39357774 - Lx4B LINE L1 -151 6907 6431 2 1425 1332 207 10 24 chr6 110159260 110159557 -39357480 + Lx4B LINE L1 6127 6419 -639 2 1425 21 57 0 0 chr6 110159625 110159660 -39357377 + AT_rich Low_complexity Low_complexity 1 35 0 2 1425 192 300 0 20 chr6 110160096 110160147 -39356890 + MIR SINE MIR 101 150 -112 2 1425 24 67 0 0 chr6 110160208 110160253 -39356784 + AT_rich Low_complexity Low_complexity 1 45 0 2 1425 35941 37 0 3 chr6 110160393 110165464 -39351573 + L1Md_Gf LINE L1 436 5589 -297 2 1425 9032 2 0 0 chr6 110165464 110166460 -39350577 + L1Md_A LINE L1 5587 6582 0 2 1425 22448 27 0 0 chr6 110166472 110169146 -39347891 + L1Md_T LINE L1 2912 5586 -297 2 1425 8423 34 0 0 chr6 110169146 110170142 -39346895 + L1Md_T LINE L1 5587 6582 0 2 1425 31107 82 5 5 chr6 110170227 110175687 -39341350 + L1Md_F2 LINE L1 127 5585 -298 2 1425 7865 55 4 2 chr6 110175688 110176678 -39340359 + L1Md_F2 LINE L1 5587 6578 -4 2 1425 582 277 6 62 chr6 110176941 110177118 -39339919 - Lx5 LINE L1 -627 6423 6257 2 1425 195 114 0 0 chr6 110177937 110177972 -39339065 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1425 348 269 66 75 chr6 110178751 110178964 -39338073 - MER57A-int LTR ERV1 -179 6008 5798 2 1425 1053 68 0 0 chr6 110179382 110179529 -39337508 + (TCTCTG)n Simple_repeat Simple_repeat 1 147 0 2 1425 21 0 0 0 chr6 110179589 110179610 -39337427 + AT_rich Low_complexity Low_complexity 1 21 0 2 1425 3691 14 121 0 chr6 110179918 110180358 -39336679 - MT2_Mm LTR ERVL 0 493 1 2 1425 8143 40 0 1 chr6 110180539 110181633 -39335404 - L1Md_T LINE L1 0 6582 5490 2 1425 1122 309 27 54 chr6 110182265 110182634 -39334403 - MTE2b LTR MaLR -15 364 6 2 1425 355 327 9 27 chr6 110183540 110183650 -39333387 - RSINE1 SINE B4 -2 163 56 2 1425 823 125 30 0 chr6 110183862 110184030 -39333007 + (TA)n Simple_repeat Simple_repeat 1 173 0 2 1425 755 198 34 11 chr6 110184188 110184367 -39332670 - B2_Mm2 SINE B2 -9 186 4 2 1425 450 34 0 0 chr6 110184598 110184657 -39332380 + L1_Mus2 LINE L1 6499 6557 -9 2 1425 7098 43 3 1 chr6 110184657 110185524 -39331513 - L1Md_F3 LINE L1 -2 6582 5714 2 1425 560 359 31 51 chr6 110185586 110186076 -39330961 + Lx8 LINE L1 6972 7451 -22 2 1425 463 277 76 74 chr6 110186373 110186776 -39330261 - L1M4b LINE L1 -4008 3326 2763 2 1425 883 284 5 0 chr6 110186837 110187041 -39329996 + B3 SINE B2 2 206 -10 2 1425 2488 150 35 9 chr6 110187041 110187499 -39329538 + Lx3C LINE L1 6477 6946 -30 2 1425 280 256 0 55 chr6 110187504 110187595 -39329442 + Lx3C LINE L1 6888 6973 -3 2 1425 1473 157 67 7 chr6 110187771 110188041 -39328996 + Lx LINE L1 6368 6653 -1 2 1425 515 98 0 0 chr6 110188119 110188201 -39328836 - Lx3_Mus LINE L1 0 7009 6928 2 1425 400 340 49 14 chr6 110188335 110188478 -39328559 + RSINE1 SINE B4 12 159 -6 2 1425 268 222 37 12 chr6 110188494 110188576 -39328461 + CT-rich Low_complexity Low_complexity 2 85 0 2 1425 378 159 0 0 chr6 110188650 110188719 -39328318 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1425 260 309 173 0 chr6 110189142 110189252 -39327785 - RMER15 LTR ERVL -24 551 423 2 1425 279 0 0 0 chr6 110189748 110189779 -39327258 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1425 345 140 0 34 chr6 110190658 110190717 -39326320 - ORR1D1 LTR MaLR 0 384 328 2 1425 425 122 0 12 chr6 110190723 110190806 -39326231 - L1Md_F2 LINE L1 0 6582 6501 2 1425 531 32 0 0 chr6 110190806 110190869 -39326168 + L1Md_T LINE L1 6363 6425 -157 2 1425 1020 221 101 86 chr6 110190874 110191201 -39325836 - ORR1D1 LTR MaLR -42 332 1 2 1425 283 250 71 107 chr6 110191239 110191436 -39325601 - RMER10A LTR ERVL -24 418 229 2 1425 367 296 168 120 chr6 110191644 110191894 -39325143 - RMER20B LTR ERVK -15 612 351 2 1425 391 300 93 109 chr6 110192088 110192335 -39324702 - RMER10A LTR ERVL -197 245 3 2 1425 2085 69 137 10 chr6 110192592 110192899 -39324138 + ORR1A1 LTR MaLR 1 346 0 2 1425 5112 118 118 1 chr6 110192906 110194020 -39323017 + ORR1A1-int LTR MaLR 471 1963 0 2 1425 2121 53 122 0 chr6 110194020 110194322 -39322715 + ORR1A1 LTR MaLR 1 339 -7 2 1425 5253 140 16 17 chr6 110194665 110195587 -39321450 - Lx3A LINE L1 -7 6974 6054 2 1425 972 48 0 0 chr6 110195672 110195798 -39321239 + (TC)n Simple_repeat Simple_repeat 1 126 0 2 1425 568 283 14 8 chr6 110195842 110196027 -39321010 - Lx7 LINE L1 -336 7137 6948 2 1425 231 211 44 162 chr6 110196134 110196149 -39320888 - ORR1A4 LTR MaLR -24 355 342 2 1425 288 220 280 0 chr6 110196149 110196249 -39320788 + B1_Mm SINE Alu 1 128 -19 2 1425 1143 151 10 5 chr6 110196249 110196442 -39320595 - ORR1A4 LTR MaLR -38 291 98 2 1425 495 0 0 0 chr6 110197051 110197106 -39319931 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1425 266 0 0 29 chr6 110197106 110197140 -39319897 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1425 460 305 74 32 chr6 110198130 110198347 -39318690 + MIRb SINE MIR 37 262 -6 2 1425 1387 210 17 88 chr6 110199372 110199779 -39317258 - ORR1C1 LTR MaLR 0 378 1 2 1425 4245 149 42 11 chr6 110199877 110199921 -39317116 - L1_Mur1 LINE L1 -557 5329 5273 2 1425 297 0 0 0 chr6 110199921 110199954 -39317083 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2 1425 4245 149 42 11 chr6 110199954 110200553 -39316484 - L1_Mur1 LINE L1 -614 5272 4679 2 1425 5474 129 0 7 chr6 110200553 110201389 -39315648 + Lx LINE L1 5822 6651 -3 2 1425 4245 149 42 11 chr6 110201389 110201551 -39315486 - L1_Mur1 LINE L1 -1208 4678 4501 2 1425 299 70 47 0 chr6 110201550 110201593 -39315444 + Lx3B LINE L1 5329 5373 -504 2 1425 3540 63 7 7 chr6 110201593 110202054 -39314983 + L1Md_F2 LINE L1 6108 6568 -14 3 1425 1329 156 11 0 chr6 110202059 110202302 -39314735 + L1_Mur1 LINE L1 5352 5607 -576 3 1425 12701 38 1 4 chr6 110202300 110202560 -39314477 - L1_Mm LINE L1 -721 5162 4908 3 1425 3340 44 35 104 chr6 110202560 110203070 -39313967 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1425 12701 38 1 4 chr6 110203070 110204369 -39312668 - L1_Mm LINE L1 -976 4907 3608 3 1425 2360 163 30 52 chr6 110204368 110204528 -39312509 + Lx3B LINE L1 5431 5567 -319 2 1425 7816 56 1 15 chr6 110204528 110205536 -39311501 + L1Md_F2 LINE L1 5588 6581 -1 3 1425 2360 178 50 31 chr6 110205536 110206042 -39310995 + Lx3B LINE L1 5568 6109 -864 2 1425 909 311 70 19 chr6 110206934 110207305 -39309732 + Lx8 LINE L1 6824 7213 -260 3 1425 4259 32 0 0 chr6 110207334 110207837 -39309200 + L1Md_A LINE L1 6080 6582 0 3 1425 408 97 0 0 chr6 110208103 110208165 -39308872 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1425 240 133 33 16 chr6 110209427 110209488 -39307549 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 1425 306 65 32 16 chr6 110209787 110209850 -39307187 + (TTTTTG)n Simple_repeat Simple_repeat 2 65 0 3 1425 1154 253 40 32 chr6 110210002 110210378 -39306659 - MTE2b LTR MaLR 0 379 1 3 1425 342 0 0 0 chr6 110212083 110212121 -39304916 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1425 576 0 0 0 chr6 110212121 110212184 -39304853 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1425 234 209 0 0 chr6 110212561 110212604 -39304433 + B4A SINE B4 2 44 -248 3 1425 318 296 233 15 chr6 110212740 110212942 -39304095 - L1MEg LINE L1 -2956 3190 2945 3 1425 921 292 44 6 chr6 110214495 110214596 -39302441 - Lx9 LINE L1 -31 7613 7513 3 1425 501 17 0 0 chr6 110214596 110214654 -39302383 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1425 921 292 44 6 chr6 110214654 110214896 -39302141 - Lx9 LINE L1 -132 7512 7258 3 1425 514 259 112 18 chr6 110214913 110215082 -39301955 + Lx9 LINE L1 7072 7256 -388 3 1425 617 312 114 62 chr6 110215594 110216192 -39300845 - L1MEg LINE L1 -4676 1566 938 3 1425 2518 176 2 13 chr6 110216193 110216649 -39300388 - Lx4A LINE L1 0 7058 6608 3 1425 2060 128 12 6 chr6 110216649 110216987 -39300050 - Lx4A LINE L1 -947 6111 5772 3 1425 1575 321 34 74 chr6 110217115 110217995 -39299042 + Lx9 LINE L1 6094 6938 -706 3 1425 315 325 32 49 chr6 110218029 110218152 -39298885 - B1F SINE Alu -26 123 3 3 1425 266 235 14 14 chr6 110218221 110218277 -39298760 + polypyrimidine Low_complexity Low_complexity 18 74 0 3 1425 974 115 0 45 chr6 110218277 110218432 -39298605 - B1_Mus1 SINE Alu 0 148 1 3 1425 266 235 14 14 chr6 110218432 110218444 -39298593 + polypyrimidine Low_complexity Low_complexity 6 17 0 3 1425 581 341 34 11 chr6 110219279 110219546 -39297491 - Lx8 LINE L1 -649 6824 6552 3 1425 270 54 37 86 chr6 110219703 110219784 -39297253 + (TTTG)n Simple_repeat Simple_repeat 2 78 0 3 1425 195 125 0 0 chr6 110221367 110221407 -39295630 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1425 886 205 112 20 chr6 110221713 110222041 -39294996 - RMER6C LTR ERVK -93 597 295 3 1425 279 0 0 0 chr6 110222041 110222072 -39294965 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 1425 320 273 92 50 chr6 110222072 110222211 -39294826 - RMER6C LTR ERVK -346 374 218 3 1425 279 283 142 59 chr6 110222523 110222692 -39294345 - MLT2F LTR ERVL -440 223 41 3 1425 292 352 8 32 chr6 110222920 110223046 -39293991 + MIRb SINE MIR 110 232 -36 3 1425 23 0 0 0 chr6 110224366 110224389 -39292648 + AT_rich Low_complexity Low_complexity 1 23 0 3 1425 605 343 32 16 chr6 110226374 110226623 -39290414 + MER2 DNA MER2_type 87 339 -6 3 1425 337 319 32 0 chr6 110226886 110226980 -39290057 + B1F2 SINE Alu 10 106 -43 3 1425 363 272 19 0 chr6 110227627 110227730 -39289307 + Tigger12 DNA MER2_type 1854 1958 -1 3 1425 215 246 29 14 chr6 110228035 110228105 -39288932 + CT-rich Low_complexity Low_complexity 5 75 0 3 1425 21 0 0 0 chr6 110228289 110228310 -39288727 + AT_rich Low_complexity Low_complexity 1 21 0 3 1425 980 340 58 31 chr6 110228451 110229033 -39288004 - Lx9 LINE L1 -190 7454 6857 3 1425 264 274 0 0 chr6 110229095 110229168 -39287869 + (TAG)n Simple_repeat Simple_repeat 1 73 0 3 1425 492 18 0 0 chr6 110230808 110230865 -39286172 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1425 365 288 8 0 chr6 110231101 110231219 -39285818 + (TG)n Simple_repeat Simple_repeat 1 119 0 3 1425 270 219 31 0 chr6 110231290 110231386 -39285651 + (TA)n Simple_repeat Simple_repeat 2 100 0 3 1425 363 98 0 0 chr6 110231389 110231450 -39285587 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 3 1426 375 193 0 0 chr6 110233376 110233459 -39283578 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1426 585 350 19 66 chr6 110233526 110233737 -39283300 - B3A SINE B2 -15 201 1 3 1426 449 299 134 11 chr6 110233738 110233924 -39283113 - B4 SINE B4 -64 228 20 3 1426 3442 224 71 42 chr6 110234263 110235223 -39281814 - Lx5 LINE L1 0 7050 6063 3 1426 279 221 19 104 chr6 110235709 110235815 -39281222 + MER34 LTR ERV1 204 300 -242 3 1426 313 235 76 34 chr6 110235868 110235987 -39281050 + MER34 LTR ERV1 419 542 0 3 1426 191 61 30 0 chr6 110237256 110237289 -39279748 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1426 685 188 0 0 chr6 110237289 110237401 -39279636 - B1_Mus1 SINE Alu -36 112 1 3 1426 306 356 40 20 chr6 110237579 110237731 -39279306 - MLT1A0 LTR MaLR 0 408 228 3 1426 1097 328 96 85 chr6 110237861 110239282 -39277755 - MLT1A0-int LTR MaLR -5 1730 8 3 1426 736 351 76 12 chr6 110239290 110239633 -39277404 - MLT1A0 LTR MaLR 0 365 1 3 1426 189 320 77 67 chr6 110239725 110239829 -39277208 + MIRc SINE MIR 24 128 -140 3 1426 22 0 0 0 chr6 110239829 110239851 -39277186 + AT_rich Low_complexity Low_complexity 1 22 0 3 1426 472 330 37 54 chr6 110240803 110241098 -39275939 + B4A SINE B4 3 292 0 3 1426 537 58 0 0 chr6 110241099 110241168 -39275869 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1426 464 335 36 36 chr6 110241401 110241652 -39275385 + Lx8 LINE L1 6973 7223 -250 3 1426 959 313 19 88 chr6 110242053 110242141 -39274896 + Lx6 LINE L1 6945 6981 -479 3 1426 1852 128 38 6 chr6 110242141 110242456 -39274581 - ORR1A4 LTR MaLR 0 329 5 3 1426 959 278 23 93 chr6 110242456 110242769 -39274268 + Lx6 LINE L1 6982 7261 -199 3 1426 501 115 0 0 chr6 110242800 110242878 -39274159 + (TCCCC)n Simple_repeat Simple_repeat 5 82 0 3 1426 33 25 0 0 chr6 110242994 110243034 -39274003 + AT_rich Low_complexity Low_complexity 1 40 0 3 1426 202 214 41 41 chr6 110244059 110244132 -39272905 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 3 1426 242 343 82 20 chr6 110244455 110244601 -39272436 + L3b LINE CR1 299 453 -29 3 1426 180 0 0 0 chr6 110245536 110245556 -39271481 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 3 1426 419 242 8 0 chr6 110245554 110245674 -39271363 + CT-rich Low_complexity Low_complexity 1 121 0 3 1426 918 109 0 0 chr6 110245954 110246091 -39270946 + (GAA)n Simple_repeat Simple_repeat 1 137 0 3 1426 585 348 39 0 chr6 110246189 110246344 -39270693 - RSINE1 SINE B4 -2 163 3 3 1426 21 0 0 0 chr6 110247358 110247379 -39269658 + AT_rich Low_complexity Low_complexity 1 21 0 3 1426 396 345 80 5 chr6 110247444 110247645 -39269392 - ID_B1 SINE B4 -4 220 5 3 1426 972 70 0 0 chr6 110248335 110248464 -39268573 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 3 1426 486 82 0 0 chr6 110248483 110248556 -39268481 - L1_Mus1 LINE L1 -1 6566 6494 3 1426 3823 142 92 7 chr6 110248775 110249448 -39267589 + Lx2 LINE L1 6262 6991 -6 3 1426 216 67 0 0 chr6 110249449 110249479 -39267558 + (CAA)n Simple_repeat Simple_repeat 3 32 0 3 1426 21 71 0 0 chr6 110249558 110249600 -39267437 + AT_rich Low_complexity Low_complexity 1 42 0 3 1426 44 70 0 0 chr6 110250564 110250650 -39266387 + AT_rich Low_complexity Low_complexity 1 86 0 3 1426 639 266 14 7 chr6 110250846 110250990 -39266047 + B4 SINE B4 1 145 -147 3 1426 1477 156 4 0 chr6 110251085 110251329 -39265708 - Lx2 LINE L1 0 6997 6753 3 1426 287 329 63 0 chr6 110251394 110251473 -39265564 - RSINE1 SINE B4 -33 132 49 3 1426 349 182 0 0 chr6 110251473 110251550 -39265487 + Lx2A1 LINE L1 6932 7008 0 3 1426 246 176 59 0 chr6 110252090 110252141 -39264896 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 3 1426 8060 163 15 12 chr6 110252378 110254271 -39262766 - Lx2 LINE L1 -17 6980 5081 3 1426 2447 192 16 6 chr6 110254272 110254779 -39262258 + Lx2 LINE L1 4593 5104 -782 3 1426 7773 55 3 1 chr6 110255314 110256607 -39260430 - L1Md_F2 LINE L1 -12 6570 5275 3 1426 991 228 8 62 chr6 110256646 110256889 -39260148 + MTD LTR MaLR 3 232 -187 3 1426 285 84 20 0 chr6 110256940 110256989 -39260048 + MTD LTR MaLR 326 419 0 3 1426 599 123 7 35 chr6 110257527 110257670 -39259367 + (TA)n Simple_repeat Simple_repeat 2 140 0 3 1426 230 375 0 0 chr6 110257671 110257767 -39259270 + (TATG)n Simple_repeat Simple_repeat 3 98 0 3 1426 825 169 145 10 chr6 110258604 110258814 -39258223 + ORR1D1 LTR MaLR 103 372 -2 3 1426 248 38 74 19 chr6 110258876 110258930 -39258107 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 3 1426 277 351 66 15 chr6 110259248 110259384 -39257653 - MER5A1 DNA MER1_type -2 164 22 3 1426 381 351 169 24 chr6 110259681 110259929 -39257108 - B4 SINE B4 -6 286 3 3 1426 304 211 27 27 chr6 110260002 110260114 -39256923 + (TA)n Simple_repeat Simple_repeat 1 112 0 3 1426 209 200 0 35 chr6 110260122 110260179 -39256858 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 3 1426 244 204 32 54 chr6 110260306 110260399 -39256638 + Lx9 LINE L1 7532 7622 -22 3 1426 369 0 0 0 chr6 110260401 110260442 -39256595 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1426 183 100 0 0 chr6 110260442 110260472 -39256565 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1426 21 0 0 0 chr6 110261508 110261529 -39255508 + AT_rich Low_complexity Low_complexity 1 21 0 3 1426 22 88 0 0 chr6 110261639 110261696 -39255341 + AT_rich Low_complexity Low_complexity 1 57 0 3 1426 270 229 0 16 chr6 110261896 110261958 -39255079 - Lx8 LINE L1 -311 7162 7102 3 1426 492 62 0 0 chr6 110262367 110262431 -39254606 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1426 184 315 90 0 chr6 110262988 110263077 -39253960 - MIR SINE MIR -165 97 1 3 1426 4234 55 0 0 chr6 110264540 110265067 -39251970 + L1Md_F3 LINE L1 6044 6570 -14 3 1426 4295 35 12 0 chr6 110265240 110265750 -39251287 - L1Md_F2 LINE L1 -13 6569 6054 3 1426 329 306 45 27 chr6 110265918 110266029 -39251008 - Cheshire DNA MER1_type -2141 279 167 3 1426 2698 135 4 32 chr6 110266204 110266677 -39250360 + Lx2A LINE L1 6549 7008 0 4 1426 27 49 0 0 chr6 110266885 110266926 -39250111 + AT_rich Low_complexity Low_complexity 1 41 0 4 1426 30 27 0 0 chr6 110267326 110267363 -39249674 + AT_rich Low_complexity Low_complexity 1 37 0 4 1426 234 91 0 0 chr6 110267596 110267629 -39249408 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1426 210 158 0 0 chr6 110269333 110269371 -39247666 + A-rich Low_complexity Low_complexity 2 39 0 4 1426 598 278 86 15 chr6 110269989 110270186 -39246851 - B3 SINE B2 -3 213 3 4 1426 254 29 29 0 chr6 110270358 110270393 -39246644 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 4 1426 6739 200 37 5 chr6 110270394 110271727 -39245310 - Lx3C LINE L1 -14 6962 5587 4 1426 706 125 0 0 chr6 110271722 110271826 -39245211 - L1_Mur1 LINE L1 -929 4957 4854 4 1426 329 157 7 0 chr6 110271836 110271900 -39245137 - Lx3C LINE L1 -296 5590 5525 4 1426 878 323 51 19 chr6 110272010 110272382 -39244655 + Lx8 LINE L1 7080 7463 -10 4 1426 7679 72 8 2 chr6 110272377 110273658 -39243379 + L1_Mus1 LINE L1 5281 6567 0 4 1426 21 0 0 0 chr6 110273658 110273679 -39243358 + AT_rich Low_complexity Low_complexity 1 21 0 4 1426 7158 81 19 1 chr6 110274098 110275197 -39241840 - L1_Mus2 LINE L1 -1 6565 5451 4 1426 613 148 83 51 chr6 110276450 110276607 -39240430 + Lx LINE L1 6493 6654 0 4 1426 231 384 56 66 chr6 110276785 110276983 -39240054 - MLT2D LTR ERVL -56 358 163 4 1426 24 53 0 0 chr6 110278679 110278717 -39238320 + AT_rich Low_complexity Low_complexity 1 38 0 4 1426 272 322 104 92 chr6 110278737 110278987 -39238050 + B4 SINE B4 11 263 -29 4 1426 708 126 23 11 chr6 110279014 110279191 -39237846 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 4 1426 1131 68 7 0 chr6 110279322 110279468 -39237569 - B1_Mus1 SINE Alu 0 148 2 4 1426 2543 111 60 2 chr6 110279814 110280213 -39236824 - Lx LINE L1 -2 6652 6231 4 1426 287 130 19 0 chr6 110281024 110281078 -39235959 + (ATG)n Simple_repeat Simple_repeat 2 56 0 4 1426 372 125 0 0 chr6 110281529 110281593 -39235444 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1426 526 314 20 62 chr6 110281694 110281840 -39235197 - B4 SINE B4 -72 220 81 4 1426 2110 247 39 14 chr6 110282701 110283193 -39233844 - RLTR18B LTR ERVK -8 504 1 4 1426 372 372 7 14 chr6 110283196 110283343 -39233694 + B3A SINE B2 47 192 -6 4 1426 24 77 0 0 chr6 110283444 110283496 -39233541 + AT_rich Low_complexity Low_complexity 1 52 0 4 1426 474 244 0 32 chr6 110283743 110283866 -39233171 + Lx2B LINE L1 6882 7000 0 4 1426 189 74 0 0 chr6 110283966 110283993 -39233044 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1426 3243 42 3 0 chr6 110284230 110284614 -39232423 - IAPEY_LTR LTR ERVK 0 385 1 4 1426 21723 44 4 6 chr6 110284614 110287331 -39229706 - IAPEy-int LTR ERVK 0 7513 4804 4 1426 2678 142 16 23 chr6 110287331 110288006 -39229031 - IAPEy-int LTR ERVK -6455 1058 1 4 1426 3229 44 3 0 chr6 110288006 110288390 -39228647 - IAPEY_LTR LTR ERVK 0 385 1 4 1426 1310 102 140 13 chr6 110288778 110289007 -39228030 + L1Md_F2 LINE L1 6325 6582 0 4 1426 774 320 43 74 chr6 110290168 110290559 -39226478 + MTE2a LTR MaLR 1 379 0 4 1426 586 344 10 49 chr6 110291305 110291510 -39225527 + B3 SINE B2 6 202 -14 4 1426 440 332 88 3 chr6 110292024 110292329 -39224708 + L1MC LINE L1 2205 2535 -3611 4 1426 465 50 0 0 chr6 110292346 110292406 -39224631 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 1426 390 292 152 17 chr6 110292491 110292787 -39224250 + L1MC LINE L1 3516 3851 -2295 4 1426 557 348 22 17 chr6 110293035 110293216 -39223821 + B3A SINE B2 2 183 -15 4 1426 594 0 0 0 chr6 110293216 110293282 -39223755 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 1426 680 335 30 0 chr6 110293334 110293531 -39223506 + B3 SINE B2 6 208 -8 4 1426 919 128 0 0 chr6 110293548 110293681 -39223356 + B1_Mus1 SINE Alu 10 142 -6 4 1426 735 274 70 0 chr6 110294028 110294229 -39222808 - B3 SINE B2 0 216 2 4 1426 255 306 54 7 chr6 110294318 110294466 -39222571 + L1MC LINE L1 5024 5178 -968 4 1426 552 268 16 0 chr6 110294473 110294600 -39222437 + B1_Mur2 SINE Alu 6 134 -15 4 1426 181 255 0 0 chr6 110296818 110296865 -39220172 - L3 LINE CR1 -4248 241 195 4 1426 1052 82 41 0 chr6 110296977 110297124 -39219913 + B2_Mm1t SINE B2 27 179 -14 4 1426 371 77 418 19 chr6 110297156 110297259 -39219778 + B2_Mm2 SINE B2 47 190 -5 4 1426 288 77 0 0 chr6 110297886 110297925 -39219112 + (TTTTC)n Simple_repeat Simple_repeat 4 42 0 4 1426 325 317 0 56 chr6 110298536 110298643 -39218394 - RSINE1 SINE B4 -24 141 41 4 1426 1197 263 94 53 chr6 110298699 110299093 -39217944 + MTD LTR MaLR 10 419 0 4 1426 1518 304 56 13 chr6 110299379 110300327 -39216710 + Lx5 LINE L1 6097 7043 -7 4 1426 323 235 38 38 chr6 110301187 110301293 -39215744 - L1MDa LINE L1 -4472 2161 2056 4 1426 395 302 76 133 chr6 110301338 110301548 -39215489 + B3A SINE B2 1 198 0 4 1426 367 243 19 0 chr6 110301564 110301671 -39215366 - L1MDa LINE L1 -4618 2015 1907 4 1426 801 107 0 0 chr6 110303685 110303807 -39213230 + (TC)n Simple_repeat Simple_repeat 1 122 0 4 1426 1566 0 0 0 chr6 110303822 110303996 -39213041 + (TCTCCC)n Simple_repeat Simple_repeat 4 177 0 4 1426 1146 122 0 0 chr6 110306130 110306310 -39210727 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1426 249 0 0 0 chr6 110306315 110306343 -39210694 + L1_Mm LINE L1 1506 1533 -4350 4 1426 948 286 158 6 chr6 110306728 110307083 -39209954 + MTD LTR MaLR 11 419 0 4 1426 367 264 68 54 chr6 110307158 110307306 -39209731 - HAL1-2a_MD LINE L1 -532 2492 2343 4 1426 359 306 9 0 chr6 110307312 110307420 -39209617 + (ATG)n Simple_repeat Simple_repeat 2 110 0 4 1426 6481 116 68 2 chr6 110308351 110309864 -39207173 - L1_Mus3 LINE L1 -5 6633 5009 4 1426 192 77 0 0 chr6 110310619 110310645 -39206392 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1426 27 0 0 0 chr6 110310812 110310839 -39206198 + AT_rich Low_complexity Low_complexity 1 27 0 4 1426 314 342 66 43 chr6 110310853 110311053 -39205984 + B4A SINE B4 13 220 -72 4 1426 28 0 0 0 chr6 110311273 110311301 -39205736 + AT_rich Low_complexity Low_complexity 1 28 0 4 1426 250 232 101 34 chr6 110311552 110311641 -39205396 + MER5C1 DNA MER1_type 169 263 0 4 1426 227 304 122 70 chr6 110311661 110311947 -39205090 - L1MC3 LINE L1 -2 7783 7483 4 1426 671 134 0 8 chr6 110311948 110312053 -39204984 + (TA)n Simple_repeat Simple_repeat 1 105 0 4 1426 5264 127 18 60 chr6 110312053 110312995 -39204042 + RLTR13D6 LTR ERVK 1 902 0 4 1426 671 134 0 8 chr6 110312995 110313009 -39204028 + (TA)n Simple_repeat Simple_repeat 1 14 0 4 1426 450 0 0 0 chr6 110313009 110313059 -39203978 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 4 1426 329 106 21 0 chr6 110313219 110313266 -39203771 - Lx LINE L1 -477 6177 6130 4 1426 1466 61 3 2 chr6 110313400 110313598 -39203439 + L1Md_T LINE L1 5415 5615 -697 4 1426 8420 33 0 0 chr6 110313598 110314594 -39202443 + L1Md_T LINE L1 5587 6582 0 4 1426 30 27 0 0 chr6 110314594 110314631 -39202406 + AT_rich Low_complexity Low_complexity 1 37 0 4 1426 369 295 40 92 chr6 110314858 110315086 -39201951 + B3 SINE B2 1 216 0 4 1426 366 80 0 0 chr6 110315663 110315713 -39201324 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 1426 750 323 133 16 chr6 110315944 110316259 -39200778 - MTEa LTR MaLR -27 352 1 4 1426 351 356 15 8 chr6 110316614 110316744 -39200293 + MLT1A0 LTR MaLR 1 131 -234 4 1426 815 291 118 46 chr6 110317378 110317767 -39199270 - RLTR26 LTR ERVK -225 417 1 4 1426 346 319 173 75 chr6 110319093 110319266 -39197771 - B3A SINE B2 -7 191 2 4 1426 513 84 0 0 chr6 110319268 110319339 -39197698 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1426 268 225 88 22 chr6 110319404 110319495 -39197542 + MER34A1 LTR ERV1 461 557 -30 4 1426 3387 207 18 32 chr6 110319496 110320255 -39196782 + Lx5 LINE L1 6175 6966 -10 4 1426 24 32 0 0 chr6 110320255 110320286 -39196751 + AT_rich Low_complexity Low_complexity 1 31 0 4 1426 279 0 0 0 chr6 110321034 110321065 -39195972 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1426 269 293 80 10 chr6 110321287 110321387 -39195650 - ORR1D2 LTR MaLR -247 123 17 4 1426 693 266 29 15 chr6 110322235 110322441 -39194596 - B3 SINE B2 -6 210 2 4 1426 488 321 46 35 chr6 110323115 110323312 -39193725 - RMER15 LTR ERVL -260 315 117 4 1426 4054 96 17 2 chr6 110323312 110323887 -39193150 - L1_Mus3 LINE L1 -309 6329 5746 4 1426 866 91 32 7 chr6 110323887 110324042 -39192995 + L1_Mus3 LINE L1 6479 6637 -1 4 1426 315 235 125 34 chr6 110324056 110324144 -39192893 - RMER15 LTR ERVL -453 122 27 4 1426 30 27 0 0 chr6 110325800 110325837 -39191200 + AT_rich Low_complexity Low_complexity 1 37 0 4 1426 1260 307 31 34 chr6 110326470 110326885 -39190152 - MTD LTR MaLR -5 414 1 4 1426 600 95 145 2 chr6 110328702 110328825 -39188212 - L1_Mus2 LINE L1 -19 6563 6423 4 1426 241 49 0 0 chr6 110328820 110328861 -39188176 + L1_Mus2 LINE L1 6526 6566 0 4 1426 29 0 0 0 chr6 110329422 110329451 -39187586 + AT_rich Low_complexity Low_complexity 1 29 0 4 1426 29 0 0 0 chr6 110330170 110330199 -39186838 + AT_rich Low_complexity Low_complexity 1 29 0 4 1426 228 214 0 0 chr6 110330209 110330265 -39186772 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1426 187 0 121 0 chr6 110330324 110330357 -39186680 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1426 189 0 0 0 chr6 110330869 110330890 -39186147 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1426 235 330 231 0 chr6 110330905 110330996 -39186041 - B1_Mur1 SINE Alu -25 124 13 4 1426 215 278 64 77 chr6 110331332 110331410 -39185627 + B4 SINE B4 4 80 -212 4 1426 477 122 0 0 chr6 110331441 110331515 -39185522 + (GGA)n Simple_repeat Simple_repeat 3 76 0 4 1426 232 378 29 47 chr6 110331803 110331975 -39185062 + MER58C DNA MER1_type 2 170 -45 4 1426 182 366 14 0 chr6 110332395 110332466 -39184571 - L2c LINE L2 -64 3323 3252 4 1426 549 80 0 0 chr6 110333071 110333146 -39183891 + (GA)n Simple_repeat Simple_repeat 1 75 0 4 1426 371 187 97 0 chr6 110333148 110333187 -39183850 + Lx2 LINE L1 6850 6890 -107 4 1426 416 99 14 0 chr6 110333187 110333258 -39183779 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1426 371 187 97 0 chr6 110333258 110333352 -39183685 + Lx2 LINE L1 6891 6995 -2 4 1426 26 50 0 0 chr6 110333452 110333492 -39183545 + AT_rich Low_complexity Low_complexity 1 40 0 5 1426 887 84 0 0 chr6 110333492 110333611 -39183426 - B1_Mus1 SINE Alu -1 147 29 5 1426 573 313 44 22 chr6 110333724 110333907 -39183130 + B4A SINE B4 1 187 -105 5 1426 573 42 0 0 chr6 110334544 110334616 -39182421 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 5 1426 186 43 0 0 chr6 110334916 110334939 -39182098 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1426 34271 78 10 2 chr6 110334953 110340895 -39176142 - L1Md_F2 LINE L1 0 6582 595 5 1426 365 116 14 0 chr6 110341001 110341070 -39175967 + (TC)n Simple_repeat Simple_repeat 2 71 0 5 1426 252 0 0 0 chr6 110341070 110341098 -39175939 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1426 396 0 0 0 chr6 110341098 110341141 -39175896 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1426 297 0 0 0 chr6 110341814 110341847 -39175190 + (CAACT)n Simple_repeat Simple_repeat 3 35 0 5 1426 249 108 0 0 chr6 110341852 110341889 -39175148 + (TTG)n Simple_repeat Simple_repeat 3 39 0 5 1426 288 352 16 39 chr6 110342484 110342611 -39174426 - LTR86A1 LTR ERVL -45 468 345 5 1426 376 291 85 37 chr6 110342813 110342977 -39174060 - MLT1C LTR MaLR -16 451 280 5 1426 1226 27 7 0 chr6 110343153 110343299 -39173738 + L1Md_A LINE L1 5440 5586 -297 5 1426 8064 39 15 1 chr6 110343299 110344281 -39172756 + L1Md_A LINE L1 5587 6582 0 5 1426 225 326 65 0 chr6 110345308 110345400 -39171637 + MamRep137 DNA TcMar? 1 98 -346 5 1426 415 48 32 0 chr6 110345922 110345984 -39171053 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 1426 329 383 45 80 chr6 110346176 110346488 -39170549 + MLT1A LTR MaLR 2 302 -72 5 1426 518 342 5 86 chr6 110346897 110347118 -39169919 + B3 SINE B2 1 203 -13 5 1426 788 190 0 6 chr6 110347122 110347291 -39169746 + (TA)n Simple_repeat Simple_repeat 1 168 0 5 1426 389 311 8 40 chr6 110347530 110347654 -39169383 + B3A SINE B2 2 121 -77 5 1426 333 0 0 0 chr6 110347703 110347740 -39169297 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1426 201 129 0 0 chr6 110347881 110347912 -39169125 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1426 2961 106 13 86 chr6 110347956 110348482 -39168555 - Lx3_Mus LINE L1 -833 6176 5689 5 1426 5415 117 10 7 chr6 110348482 110349292 -39167745 + Lx3_Mus LINE L1 6198 7009 0 5 1426 21 0 0 0 chr6 110349292 110349313 -39167724 + AT_rich Low_complexity Low_complexity 1 21 0 5 1426 231 319 28 0 chr6 110349647 110349719 -39167318 + ID SINE ID 2 75 -149 5 1426 266 255 94 21 chr6 110349841 110349897 -39167140 + B3 SINE B2 109 167 -49 5 1426 417 39 0 0 chr6 110349897 110349948 -39167089 + (CATA)n Simple_repeat Simple_repeat 4 54 0 5 1426 266 255 94 21 chr6 110349948 110349987 -39167050 + B3 SINE B2 168 211 -5 5 1426 24 0 0 0 chr6 110349988 110350012 -39167025 + AT_rich Low_complexity Low_complexity 1 24 0 5 1426 228 111 0 0 chr6 110350581 110350617 -39166420 + (TTCTCC)n Simple_repeat Simple_repeat 1 36 0 5 1426 1057 85 23 6 chr6 110350621 110350798 -39166239 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1426 981 341 53 22 chr6 110351207 110351791 -39165246 + Lx9 LINE L1 6840 7441 -203 5 1426 394 288 121 57 chr6 110351911 110352051 -39164986 + B3A SINE B2 45 193 -5 5 1426 267 312 101 61 chr6 110352880 110353078 -39163959 + B3 SINE B2 2 207 -9 5 1426 506 304 47 0 chr6 110353199 110353370 -39163667 - B3A SINE B2 -16 182 4 5 1426 2535 271 67 2 chr6 110353557 110354181 -39162856 - Lx6 LINE L1 -33 7427 6763 5 1426 591 192 6 68 chr6 110354183 110354345 -39162692 - Lx6 LINE L1 -1537 5923 5772 5 1426 2127 41 4 8 chr6 110354345 110354613 -39162424 + L1Md_F2 LINE L1 6316 6582 0 5 1426 290 208 75 38 chr6 110354761 110354841 -39162196 + RLTR25B LTR ERVK 427 509 -519 5 1426 795 38 9 0 chr6 110354778 110354883 -39162154 + B1_Mus2 SINE Alu 42 147 0 5 1426 25 31 0 0 chr6 110354897 110354929 -39162108 + AT_rich Low_complexity Low_complexity 1 32 0 5 1426 275 118 0 89 chr6 110355352 110355408 -39161629 - RLTR12A LTR ERVK -483 85 35 5 1426 4212 183 51 28 chr6 110355660 110356469 -39160568 + RMER19B LTR ERVK 76 902 0 5 1426 282 282 11 23 chr6 110356469 110356542 -39160495 + RMER5 LTR ERV1 448 519 -15 5 1426 1058 90 19 0 chr6 110356713 110356869 -39160168 - L1_Mus1 LINE L1 0 6567 6409 5 1426 1295 229 99 37 chr6 110357483 110357805 -39159232 + Lx5 LINE L1 6586 6927 -123 5 1426 589 286 36 132 chr6 110358018 110358268 -39158769 + B4 SINE B4 49 274 -18 5 1426 266 0 29 0 chr6 110358299 110358333 -39158704 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1426 345 75 0 0 chr6 110359893 110359946 -39157091 + (A)n Simple_repeat Simple_repeat 1 53 0 5 1426 481 249 287 17 chr6 110360349 110360637 -39156400 + MTD LTR MaLR 1 403 -16 5 1426 23 54 0 0 chr6 110361054 110361091 -39155946 + AT_rich Low_complexity Low_complexity 1 37 0 5 1426 1755 88 4 0 chr6 110361618 110361857 -39155180 - L1_Mus1 LINE L1 -1 6566 6327 5 1426 22 80 0 0 chr6 110361877 110361927 -39155110 + AT_rich Low_complexity Low_complexity 1 50 0 5 1426 1134 103 57 6 chr6 110362064 110362240 -39154797 + B2_Mm2 SINE B2 2 186 -9 5 1426 261 300 96 36 chr6 110362246 110362329 -39154708 - Lx8 LINE L1 -275 7198 7111 5 1427 207 0 0 0 chr6 110363369 110363392 -39153645 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1427 2062 98 50 9 chr6 110363531 110363849 -39153188 + Lx3_Mus LINE L1 6674 7004 -5 5 1427 849 50 8 0 chr6 110366406 110366527 -39150510 + L1Md_F2 LINE L1 6458 6579 -3 5 1427 936 252 14 5 chr6 110367082 110367305 -39149732 - URR1A DNA MER1_type 0 226 2 5 1427 252 235 15 0 chr6 110368468 110368536 -39148501 + L1MC2 LINE L1 6261 6329 -15 5 1427 2559 225 22 21 chr6 110368814 110369481 -39147556 - MYSERV16_I-int LTR ERVK -73 2253 1586 5 1427 202 61 0 57 chr6 110369489 110369524 -39147513 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 5 1427 1009 60 15 0 chr6 110369524 110369658 -39147379 - B1_Mus2 SINE Alu 0 147 12 5 1427 360 119 17 0 chr6 110369659 110369718 -39147319 - MYSERV-int LTR ERVK -761 5789 5730 5 1427 3360 74 2 0 chr6 110369720 110370165 -39146872 - L1_Mus3 LINE L1 -210 6428 5983 5 1427 1955 240 42 43 chr6 110370215 110370838 -39146199 - MYSERV16_I-int LTR ERVK -1064 1262 641 5 1427 235 191 16 16 chr6 110370865 110370929 -39146108 + T-rich Low_complexity Low_complexity 3 66 0 5 1427 1761 248 35 48 chr6 110370930 110371550 -39145487 - MYSERV16_I-int LTR ERVK -1712 614 3 5 1427 412 300 8 60 chr6 110371727 110371844 -39145193 - B1_Mur3 SINE Alu -21 128 18 5 1427 22 0 0 0 chr6 110371877 110371899 -39145138 + AT_rich Low_complexity Low_complexity 1 22 0 5 1427 21 36 0 0 chr6 110372294 110372322 -39144715 + AT_rich Low_complexity Low_complexity 1 28 0 5 1427 270 0 0 0 chr6 110372401 110372431 -39144606 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1427 6354 132 1 174 chr6 110372437 110373376 -39143661 + L1_Mus2 LINE L1 4643 5333 -550 5 1427 3328 35 10 0 chr6 110373376 110373780 -39143257 + L1Md_T LINE L1 6173 6580 -2 5 1427 6680 100 14 43 chr6 110373780 110374986 -39142051 + L1_Mus2 LINE L1 5334 6539 -27 5 1427 341 58 0 19 chr6 110374986 110375039 -39141998 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 5 1427 187 273 57 57 chr6 110375696 110375766 -39141271 + MIR SINE MIR 77 146 -62 5 1427 254 306 92 0 chr6 110377300 110377398 -39139639 + Tigger5 DNA MER2_type 2297 2403 -3 5 1427 228 86 0 0 chr6 110377991 110378026 -39139011 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1427 231 325 25 16 chr6 110378542 110378664 -39138373 - Lx7 LINE L1 -24 7672 7550 5 1427 6329 143 18 2 chr6 110378654 110379730 -39137307 - Lx3C LINE L1 -363 6613 5526 5 1427 1350 169 180 0 chr6 110379731 110380015 -39137022 + Lx3C LINE L1 6635 6969 -7 5 1427 763 274 76 7 chr6 110380110 110380386 -39136651 - Lx7 LINE L1 -284 7412 7118 5 1427 22635 75 1 57 chr6 110380388 110383776 -39133261 + L1_Mm LINE L1 2391 5615 -685 5 1427 7837 58 2 2 chr6 110383776 110384771 -39132266 + L1Md_F2 LINE L1 5587 6581 -1 5 1427 1359 257 10 12 chr6 110384771 110384827 -39132210 + L1_Mm LINE L1 5616 5669 -631 5 1427 24 67 0 0 chr6 110384841 110384886 -39132151 + AT_rich Low_complexity Low_complexity 1 45 0 5 1427 239 311 167 8 chr6 110386327 110386447 -39130590 - MER5A DNA MER1_type -40 149 11 5 1427 474 61 0 0 chr6 110387024 110387090 -39129947 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1427 209 314 28 28 chr6 110388160 110388232 -39128805 + MIRm SINE MIR 73 144 -132 5 1427 3288 235 43 9 chr6 110388451 110389223 -39127814 + Lx9 LINE L1 6332 7129 -515 5 1427 757 229 160 0 chr6 110389228 110389536 -39127501 + Lx9 LINE L1 7287 7643 -1 5 1427 681 345 35 57 chr6 110390032 110390209 -39126828 + B4A SINE B4 2 169 -123 5 1427 1205 160 27 18 chr6 110390209 110390432 -39126605 + URR1B DNA MER1_type 1 225 0 5 1427 681 345 35 57 chr6 110390432 110390537 -39126500 + B4A SINE B4 170 278 -14 5 1427 200 31 0 59 chr6 110390847 110390881 -39126156 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 5 1427 1167 277 102 15 chr6 110391053 110391445 -39125592 + MER57C2 LTR ERV1 6 431 -3 5 1427 239 291 35 52 chr6 110391631 110391747 -39125290 - MLT1D LTR MaLR -5 500 387 5 1427 276 273 221 64 chr6 110391817 110391989 -39125048 - MLT1D LTR MaLR -272 233 35 5 1427 565 250 7 20 chr6 110392023 110392034 -39125003 - B1_Mur4 SINE Alu 0 150 140 5 1427 198 0 0 0 chr6 110392034 110392056 -39124981 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1427 565 250 7 20 chr6 110392056 110392195 -39124842 - B1_Mur4 SINE Alu -11 139 2 5 1427 1587 238 30 19 chr6 110392198 110392562 -39124475 - ORR1D1 LTR MaLR -6 368 1 5 1427 486 0 0 0 chr6 110392903 110392957 -39124080 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 1427 966 236 14 38 chr6 110392957 110392991 -39124046 - ORR1C1 LTR MaLR -5 373 345 5 1427 3734 56 21 0 chr6 110392991 110393456 -39123581 + MT2C_Mm LTR ERVL 1 475 0 5 1427 966 236 14 38 chr6 110393456 110393623 -39123414 - ORR1C1 LTR MaLR -34 344 175 5 1427 330 115 0 0 chr6 110393623 110393684 -39123353 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 5 1427 297 68 0 0 chr6 110393693 110393737 -39123300 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1427 879 224 0 6 chr6 110393737 110393912 -39123125 - ORR1C1 LTR MaLR -198 180 7 5 1427 2103 142 6 0 chr6 110393957 110394282 -39122755 + ORR1A2 LTR MaLR 1 327 0 5 1427 513 47 0 0 chr6 110394384 110394448 -39122589 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 5 1427 1281 45 17 11 chr6 110394734 110394915 -39122122 + L1Md_F3 LINE L1 6402 6583 -1 5 1427 737 170 71 13 chr6 110394933 110395088 -39121949 - RMER6C LTR ERVK -2 688 525 5 1427 1257 210 15 2 chr6 110395085 110395348 -39121689 - ORR1D1 LTR MaLR -86 284 19 6 1427 393 218 0 0 chr6 110395348 110395426 -39121611 + RMER6-int LTR ERVK 893 970 -2207 6 1427 1569 199 221 7 chr6 110395426 110395861 -39121176 - RMER6C LTR ERVK -162 528 1 5 1427 3003 144 51 54 chr6 110395862 110396434 -39120603 - RMER6-int LTR ERVK -29 3148 2579 5 1427 307 246 0 0 chr6 110396434 110396495 -39120542 - LSU-rRNA_Hsa rRNA rRNA -3198 1837 1777 6 1427 334 83 0 0 chr6 110396495 110396543 -39120494 - RMER6-int LTR ERVK -660 2517 2470 5 1427 8465 179 21 8 chr6 110396540 110398226 -39118811 - RMER6-int LTR ERVK -1434 1743 3 5 1427 2478 180 137 15 chr6 110398232 110398829 -39118208 - RMER6C LTR ERVK -20 670 1 5 1427 502 352 71 0 chr6 110398902 110399084 -39117953 + B3 SINE B2 10 204 -12 6 1427 7841 50 13 3 chr6 110401081 110402067 -39114970 + L1Md_F2 LINE L1 5587 6582 0 6 1427 208 109 0 80 chr6 110402076 110402126 -39114911 + T-rich Low_complexity Low_complexity 2 47 0 6 1427 684 242 39 21 chr6 110402126 110402323 -39114714 - MTEb LTR MaLR -67 312 109 6 1427 981 282 48 26 chr6 110402323 110402660 -39114377 + ORR1D2 LTR MaLR 1 359 0 6 1427 380 217 109 0 chr6 110402662 110402754 -39114283 - MTEb LTR MaLR -275 104 3 6 1427 472 248 71 0 chr6 110403717 110403830 -39113207 - B3A SINE B2 -76 122 2 6 1427 232 96 58 0 chr6 110403835 110403887 -39113150 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 6 1427 488 269 58 23 chr6 110403901 110404072 -39112965 - RMER1C Other Other -11 1331 1155 6 1427 417 264 47 31 chr6 110404372 110404501 -39112536 + RSINE1 SINE B4 6 136 -29 6 1427 2051 97 10 0 chr6 110405181 110405471 -39111566 - L1_Mus3 LINE L1 -5 6633 6341 6 1427 358 123 0 0 chr6 110405471 110405528 -39111509 + L1_Mus3 LINE L1 6262 6318 -320 6 1427 1023 84 28 0 chr6 110405663 110405806 -39111231 - B1_Mus1 SINE Alu 0 148 2 6 1427 21 36 0 0 chr6 110406428 110406456 -39110581 + AT_rich Low_complexity Low_complexity 1 28 0 6 1427 279 0 0 0 chr6 110406456 110406487 -39110550 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 1427 774 164 0 8 chr6 110406495 110406624 -39110413 - B1_Mus1 SINE Alu -20 128 1 6 1427 431 206 35 97 chr6 110406624 110406666 -39110371 - MT2B LTR ERVL -447 154 122 6 1427 704 261 50 10 chr6 110406692 110406726 -39110311 - B3 SINE B2 -5 211 171 6 1427 387 0 0 0 chr6 110406726 110406769 -39110268 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1427 704 261 50 10 chr6 110406769 110406935 -39110102 - B3 SINE B2 -46 170 4 6 1427 738 78 0 0 chr6 110407383 110407485 -39109552 + (TC)n Simple_repeat Simple_repeat 1 102 0 6 1427 4438 115 29 1 chr6 110408391 110409073 -39107964 + L1_Mus3 LINE L1 5709 6767 -209 6 1427 1210 55 0 0 chr6 110409132 110409278 -39107759 + B1_Mus1 SINE Alu 1 146 -2 6 1427 349 20 20 20 chr6 110409278 110409329 -39107708 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 6 1427 207 0 0 0 chr6 110409506 110409529 -39107508 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1427 29 70 0 0 chr6 110410987 110411044 -39105993 + AT_rich Low_complexity Low_complexity 1 57 0 6 1427 685 281 188 9 chr6 110411245 110411318 -39105719 + MTD LTR MaLR 19 112 -309 6 1427 2004 125 18 30 chr6 110411318 110411649 -39105388 + ORR1A2 LTR MaLR 1 327 0 6 1427 789 247 111 13 chr6 110411649 110411905 -39105132 + MTD LTR MaLR 113 406 -15 6 1427 435 336 8 0 chr6 110412287 110412409 -39104628 + ID_B1 SINE B4 90 212 -12 6 1427 552 56 0 0 chr6 110412822 110412894 -39104143 + (TC)n Simple_repeat Simple_repeat 2 73 0 6 1427 21 36 0 0 chr6 110413696 110413724 -39103313 + AT_rich Low_complexity Low_complexity 1 28 0 6 1427 363 312 102 51 chr6 110413748 110413866 -39103171 - RSINE1 SINE B4 0 165 42 6 1427 381 58 0 0 chr6 110413932 110413984 -39103053 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1427 212 188 0 15 chr6 110414003 110414068 -39102969 + (TATG)n Simple_repeat Simple_repeat 1 64 0 6 1427 200 188 0 0 chr6 110414131 110414163 -39102874 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 6 1427 782 336 0 0 chr6 110414165 110414385 -39102652 - B4 SINE B4 -72 220 1 6 1427 378 0 0 0 chr6 110414556 110414598 -39102439 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1427 30 0 0 0 chr6 110414634 110414664 -39102373 + AT_rich Low_complexity Low_complexity 1 30 0 6 1427 396 0 0 0 chr6 110415508 110415552 -39101485 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1427 823 328 68 44 chr6 110415712 110416210 -39100827 + Lx8 LINE L1 6961 7470 -3 6 1427 801 274 20 74 chr6 110416425 110416669 -39100368 + RMER20B LTR ERVK 397 627 0 6 1427 535 132 18 223 chr6 110416669 110416833 -39100204 + URR1B DNA MER1_type 95 224 -1 6 1427 434 286 21 35 chr6 110416851 110416996 -39100041 - B1_Mur1 SINE Alu 0 149 7 6 1427 1980 208 41 5 chr6 110417025 110417440 -39099597 - RMER20B LTR ERVK -197 430 1 6 1427 565 196 0 0 chr6 110417442 110417534 -39099503 - URR1B DNA MER1_type -127 98 7 6 1427 255 200 53 13 chr6 110418143 110418219 -39098818 + (TCTCTG)n Simple_repeat Simple_repeat 4 82 0 6 1427 219 69 0 0 chr6 110418239 110418268 -39098769 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 6 1427 292 271 43 0 chr6 110418914 110418984 -39098053 - B3 SINE B2 -142 74 2 6 1427 185 65 0 31 chr6 110420238 110420270 -39096767 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 6 1427 278 370 9 0 chr6 110420939 110421047 -39095990 + MTEa LTR MaLR 1 109 -270 6 1427 373 286 102 30 chr6 110421244 110421410 -39095627 + MT2A LTR ERVL 331 508 -25 6 1427 21 0 0 0 chr6 110421455 110421476 -39095561 + AT_rich Low_complexity Low_complexity 1 21 0 6 1427 474 200 28 37 chr6 110421525 110421634 -39095403 - B3 SINE B2 -108 108 1 6 1427 1773 207 14 51 chr6 110421974 110422387 -39094650 + RMER10B LTR ERVL 1 398 0 6 1427 2021 194 62 18 chr6 110422394 110422829 -39094208 - Lx5 LINE L1 -82 6968 6515 6 1427 24 0 0 0 chr6 110423223 110423247 -39093790 + AT_rich Low_complexity Low_complexity 1 24 0 6 1427 308 355 28 56 chr6 110423501 110423716 -39093321 - B3 SINE B2 -6 210 2 6 1427 213 118 39 19 chr6 110423966 110424018 -39093019 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1427 225 304 125 12 chr6 110424675 110424755 -39092282 - PB1D7 SINE Alu 0 120 32 6 1427 522 43 0 0 chr6 110425280 110425349 -39091688 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1427 180 0 0 0 chr6 110426533 110426553 -39090484 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1427 331 331 93 12 chr6 110426757 110427014 -39090023 + L1MB1 LINE L1 5891 6168 -21 6 1427 30 27 0 0 chr6 110427570 110427607 -39089430 + AT_rich Low_complexity Low_complexity 1 37 0 6 1427 6045 38 0 3 chr6 110427953 110428684 -39088353 - L1Md_F2 LINE L1 -15 6567 5839 6 1427 228 351 66 30 chr6 110429498 110429695 -39087342 + Lx9 LINE L1 6957 7160 -484 6 1427 516 59 0 0 chr6 110429979 110430047 -39086990 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1427 432 0 0 0 chr6 110430837 110430885 -39086152 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1427 335 293 104 28 chr6 110431295 110431439 -39085598 - HAL1-3A_ME LINE L1 -420 2438 2284 6 1427 368 297 46 80 chr6 110431467 110431705 -39085332 - Lx6 LINE L1 -3 7457 7228 6 1427 811 216 0 45 chr6 110431702 110431881 -39085156 + Lx6 LINE L1 7043 7213 -247 6 1427 4472 149 23 0 chr6 110432207 110432238 -39084799 + L1_Mus3 LINE L1 5115 5153 -730 6 1427 233 29 29 0 chr6 110432238 110432272 -39084765 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1427 7555 105 9 12 chr6 110432272 110433761 -39083276 + L1_Mus3 LINE L1 5154 6638 0 6 1427 474 204 0 0 chr6 110434274 110434382 -39082655 + (CA)n Simple_repeat Simple_repeat 2 109 0 6 1427 353 127 55 0 chr6 110434383 110434438 -39082599 + HAL1-3A_ME LINE L1 1976 2033 -825 6 1427 1095 86 17 0 chr6 110434829 110435003 -39082034 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 6 1427 816 111 29 6 chr6 110435138 110435310 -39081727 + (TC)n Simple_repeat Simple_repeat 1 176 0 6 1427 38 75 0 0 chr6 110438935 110439015 -39078022 + AT_rich Low_complexity Low_complexity 1 80 0 6 1427 564 279 8 0 chr6 110439089 110439211 -39077826 - RSINE1 SINE B4 -38 127 5 6 1427 4261 70 23 3 chr6 110440457 110441029 -39076008 - L1_Mus1 LINE L1 0 6567 5985 6 1427 3089 40 11 0 chr6 110441029 110441407 -39075630 + L1_Mus1 LINE L1 5616 5997 -570 6 1427 322 272 62 0 chr6 110442420 110442501 -39074536 - ID_B1 SINE B4 -14 210 125 6 1427 486 49 0 0 chr6 110442786 110442847 -39074190 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1427 534 301 15 0 chr6 110442847 110442980 -39074057 - RSINE1 SINE B4 -25 140 6 6 1427 31 0 0 0 chr6 110444029 110444060 -39072977 + AT_rich Low_complexity Low_complexity 1 31 0 6 1427 529 327 11 73 chr6 110444235 110444413 -39072624 + B3A SINE B2 2 168 -30 6 1427 537 94 0 0 chr6 110444419 110444504 -39072533 + (CA)n Simple_repeat Simple_repeat 1 85 0 6 1427 22 0 0 0 chr6 110444537 110444559 -39072478 + AT_rich Low_complexity Low_complexity 1 22 0 6 1427 558 330 54 21 chr6 110444939 110445125 -39071912 - B3A SINE B2 -5 193 2 6 1427 25 31 0 0 chr6 110445822 110445854 -39071183 + AT_rich Low_complexity Low_complexity 1 32 0 6 1427 428 320 126 29 chr6 110446349 110446626 -39070411 + Tigger7 DNA MER2_type 2179 2482 -9 6 1427 413 316 15 0 chr6 110447094 110447230 -39069807 - B1F SINE Alu -11 138 1 6 1427 6174 103 42 20 chr6 110447419 110448513 -39068524 - L1_Mus2 LINE L1 -19 6547 5430 6 1427 3819 128 21 0 chr6 110448512 110448817 -39068220 + L1_Mm LINE L1 4929 5234 -649 6 1427 513 0 0 0 chr6 110448817 110448874 -39068163 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 1427 3819 140 20 1 chr6 110448874 110449210 -39067827 + L1_Mm LINE L1 5235 5609 -555 6 1427 426 0 0 135 chr6 110449463 110449641 -39067396 + (TAA)n Simple_repeat Simple_repeat 2 155 0 6 1427 551 0 107 27 chr6 110449645 110449945 -39067092 + (TA)n Simple_repeat Simple_repeat 1 324 0 6 1427 4595 190 100 12 chr6 110450989 110452475 -39064562 + Lx5 LINE L1 5376 7049 -1 6 1427 30 69 0 0 chr6 110452645 110452703 -39064334 + AT_rich Low_complexity Low_complexity 1 58 0 6 1427 231 370 55 9 chr6 110452859 110452968 -39064069 + PB1D9 SINE Alu 2 115 -5 6 1427 315 312 38 0 chr6 110453124 110453200 -39063837 - RMER5 LTR ERV1 -227 307 229 6 1427 556 365 63 15 chr6 110453200 110453541 -39063496 + MTE2a LTR MaLR 3 351 -28 6 1427 533 61 0 12 chr6 110453547 110453630 -39063407 + (TTTTA)n Simple_repeat Simple_repeat 1 82 0 6 1427 798 136 68 0 chr6 110453630 110453762 -39063275 - B1_Mus2 SINE Alu -6 141 1 7 1427 237 128 0 0 chr6 110453766 110453805 -39063232 + MTE2a LTR MaLR 341 379 0 6 1427 367 304 102 32 chr6 110453805 110453992 -39063045 - RMER5 LTR ERV1 -289 245 46 6 1427 1742 111 11 0 chr6 110454374 110454635 -39062402 - L1_Mus3 LINE L1 -386 6252 5989 7 1427 2340 82 56 11 chr6 110454635 110454991 -39062046 + L1_Mus3 LINE L1 6260 6631 -7 7 1427 6116 88 40 0 chr6 110455310 110456178 -39060859 + Lx3_Mus LINE L1 6095 6997 -12 7 1427 8809 179 41 38 chr6 110456239 110458167 -39058870 + L1_Mur2 LINE L1 3745 5677 -200 7 1427 6731 49 110 3 chr6 110458166 110458886 -39058151 + L1_Mus4 LINE L1 4867 5586 -297 7 1427 8993 4 0 0 chr6 110458886 110459882 -39057155 + L1Md_A LINE L1 5587 6582 0 7 1427 6731 131 125 16 chr6 110459882 110460208 -39056829 + L1_Mus4 LINE L1 5587 6014 -622 7 1427 965 123 0 0 chr6 110460208 110460346 -39056691 + B1_Mus2 SINE Alu 2 139 -8 7 1427 1873 251 183 30 chr6 110460346 110460838 -39056199 + L1_Mus4 LINE L1 6015 6511 -125 7 1427 21 0 0 0 chr6 110460838 110460859 -39056178 + AT_rich Low_complexity Low_complexity 1 21 0 7 1427 535 231 81 63 chr6 110461168 110461330 -39055707 + RSINE1 SINE B4 1 165 0 7 1427 26 50 0 0 chr6 110461330 110461370 -39055667 + AT_rich Low_complexity Low_complexity 1 40 0 7 1427 419 320 77 30 chr6 110461584 110461933 -39055104 + L1M7 LINE L1 922 1532 -4711 7 1427 514 374 41 12 chr6 110462193 110462534 -39054503 - Lx8 LINE L1 -163 7310 6960 7 1427 7604 130 20 56 chr6 110462892 110462906 -39054131 - Lx3A LINE L1 -1 6980 6970 7 1427 717 12 0 0 chr6 110462906 110462988 -39054049 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 7 1427 7604 130 20 56 chr6 110462988 110464090 -39052947 - Lx3A LINE L1 -12 6969 5911 7 1427 1053 83 0 0 chr6 110464090 110464235 -39052802 + (TTCC)n Simple_repeat Simple_repeat 3 147 0 7 1427 7604 130 20 56 chr6 110464235 110464486 -39052551 - Lx3A LINE L1 -1071 5910 5661 7 1427 300 226 128 0 chr6 110464575 110464677 -39052360 + L1MDa LINE L1 2435 2549 -4084 7 1427 479 299 88 9 chr6 110464680 110464906 -39052131 - Tigger7 DNA MER2_type -3 2488 2245 7 1427 560 345 5 24 chr6 110464921 110465129 -39051908 - Tigger7 DNA MER2_type -2268 223 20 7 1427 441 359 87 46 chr6 110465383 110465795 -39051242 + MLT1C LTR MaLR 39 467 0 7 1427 630 319 16 30 chr6 110466489 110466709 -39050328 + B3A SINE B2 2 215 -1 7 1427 405 0 0 0 chr6 110467283 110467328 -39049709 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1427 389 344 24 16 chr6 110467448 110467575 -39049462 + B1F SINE Alu 1 128 -21 7 1427 236 290 0 16 chr6 110468014 110468077 -39048960 - MER88 LTR ERVL -392 72 11 7 1427 920 297 101 31 chr6 110468797 110469124 -39047913 - ORR1E LTR MaLR 0 359 10 7 1427 606 130 26 13 chr6 110469629 110469785 -39047252 + (TG)n Simple_repeat Simple_repeat 1 158 0 7 1427 566 338 45 69 chr6 110469786 110470075 -39046962 - B4A SINE B4 0 292 11 7 1427 476 376 8 0 chr6 110470429 110470562 -39046475 + RSINE1 SINE B4 32 165 0 7 1427 436 325 0 0 chr6 110470859 110470976 -39046061 - B1F SINE Alu -20 129 13 7 1427 522 256 57 28 chr6 110472990 110473131 -39043906 + MTD LTR MaLR 116 260 -159 7 1427 230 224 33 49 chr6 110473155 110473216 -39043821 + MTD LTR MaLR 347 406 -15 7 1427 430 331 12 36 chr6 110473940 110474106 -39042931 - RSINE1 SINE B4 0 165 4 7 1427 576 314 77 48 chr6 110474277 110474539 -39042498 - Lx8 LINE L1 -152 7321 7050 7 1427 3297 44 2 2 chr6 110474539 110474946 -39042091 + L1Md_F3 LINE L1 6162 6568 -16 7 1427 210 37 0 0 chr6 110474950 110474977 -39042060 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1427 576 314 77 48 chr6 110474977 110475060 -39041977 - Lx8 LINE L1 -424 7049 6961 7 1427 315 262 30 60 chr6 110475974 110476108 -39040929 + MIRb SINE MIR 29 158 -110 7 1427 23 54 0 0 chr6 110476116 110476153 -39040884 + AT_rich Low_complexity Low_complexity 1 37 0 7 1427 598 298 116 23 chr6 110476501 110476759 -39040278 - B4A SINE B4 -5 287 6 7 1427 1769 206 46 105 chr6 110477251 110477820 -39039217 - Lx5 LINE L1 -874 6176 5642 7 1427 973 257 5 0 chr6 110477819 110478033 -39039004 + Lx5 LINE L1 6163 6377 -673 7 1427 1685 280 154 33 chr6 110478376 110478975 -39038062 + Lx5 LINE L1 6347 7017 -33 7 1427 1288 274 44 20 chr6 110479030 110479439 -39037598 + MTD LTR MaLR 1 419 0 7 1427 8776 113 26 19 chr6 110480278 110481156 -39035881 - L1_Mm LINE L1 -1660 4223 3333 7 1427 1516 37 0 5 chr6 110481156 110481347 -39035690 - L1Md_F3 LINE L1 -16 6568 6379 7 1427 8776 113 26 19 chr6 110481347 110481877 -39035160 - L1_Mm LINE L1 -2551 3332 2805 7 1427 6225 110 4 3 chr6 110481874 110482798 -39034239 + L1_Mm LINE L1 4201 5125 -758 7 1427 351 359 12 37 chr6 110482908 110483070 -39033967 - L2 LINE L2 -751 2668 2511 7 1427 301 313 82 29 chr6 110483590 110483761 -39033276 + LTR16B2 LTR ERVL 279 458 -4 7 1427 444 128 0 0 chr6 110483960 110484038 -39032999 + (TATG)n Simple_repeat Simple_repeat 2 79 0 7 1427 224 239 0 22 chr6 110484225 110484315 -39032722 + (TATATG)n Simple_repeat Simple_repeat 3 90 0 7 1427 525 32 0 0 chr6 110484381 110484444 -39032593 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1427 510 327 65 0 chr6 110484451 110484604 -39032433 - B3A SINE B2 -35 163 1 7 1427 363 44 0 0 chr6 110485188 110485233 -39031804 + (TATTG)n Simple_repeat Simple_repeat 1 45 0 7 1427 526 350 25 25 chr6 110486039 110486200 -39030837 - B3A SINE B2 -37 161 1 7 1427 441 250 5 12 chr6 110486732 110486842 -39030195 + PB1D10 SINE Alu 1 111 -38 7 1427 402 292 35 7 chr6 110486919 110487064 -39029973 + L1MC1 LINE L1 5947 6095 -238 7 1427 5544 90 93 2 chr6 110487151 110487965 -39029072 - Lx3A LINE L1 -10 6971 6084 7 1427 1087 95 7 0 chr6 110488144 110488291 -39028746 + B1_Mus1 SINE Alu 1 148 0 7 1427 27 0 0 0 chr6 110488295 110488322 -39028715 + AT_rich Low_complexity Low_complexity 1 27 0 7 1427 362 260 0 0 chr6 110489655 110489728 -39027309 + ID4_ SINE ID 2 74 -9 7 1427 603 0 0 0 chr6 110490949 110491016 -39026021 + (TC)n Simple_repeat Simple_repeat 2 68 0 7 1427 2114 38 0 4 chr6 110491135 110491397 -39025640 - L1Md_F3 LINE L1 -614 5970 5710 7 1427 5077 42 0 9 chr6 110491397 110492030 -39025007 + L1Md_F3 LINE L1 5956 6582 -2 7 1427 322 324 88 68 chr6 110492155 110492599 -39024438 - L1MC2 LINE L1 -140 6204 5752 7 1427 240 263 0 73 chr6 110492763 110492845 -39024192 + ORR1D2 LTR MaLR 295 370 0 7 1428 360 0 0 0 chr6 110495481 110495521 -39021516 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1428 351 0 0 0 chr6 110495521 110495559 -39021478 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1428 725 140 99 35 chr6 110496325 110496466 -39020571 + B1_Mur4 SINE Alu 1 150 0 7 1428 411 290 0 0 chr6 110498581 110498674 -39018363 - B3A SINE B2 -48 150 58 7 1428 185 391 47 0 chr6 110499384 110499512 -39017525 + L2a LINE L2 3255 3388 -38 7 1428 432 269 0 65 chr6 110500012 110500151 -39016886 - ID_B1 SINE B4 -85 139 10 1 1428 357 109 0 0 chr6 110500801 110500856 -39016181 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1428 212 81 0 26 chr6 110501983 110501994 -39015043 + (GAAAA)n Simple_repeat Simple_repeat 4 14 0 3 1428 3508 132 22 2 chr6 110501994 110502547 -39014490 + Lx2 LINE L1 6434 6997 0 4 1428 212 81 0 26 chr6 110502547 110502573 -39014464 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 5 1428 355 238 8 30 chr6 110502872 110503006 -39014031 - Lx9 LINE L1 0 7644 7514 6 1428 450 0 0 0 chr6 110503006 110503056 -39013981 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1428 33 43 0 0 chr6 110503582 110503629 -39013408 + AT_rich Low_complexity Low_complexity 1 47 0 8 1428 487 307 39 5 chr6 110504587 110504790 -39012247 + B3 SINE B2 2 211 -5 9 1428 2111 73 16 16 chr6 110505219 110505526 -39011511 + L1_Mus3 LINE L1 6331 6637 -1 1 1428 304 292 69 46 chr6 110505768 110506030 -39011007 - L1MB5 LINE L1 -211 5963 5696 1 1428 210 118 0 0 chr6 110506041 110506075 -39010962 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1428 289 252 86 9 chr6 110506075 110506191 -39010846 + L1_Mur3 LINE L1 4137 4261 -1619 1 1428 563 248 35 0 chr6 110506809 110506922 -39010115 + B3A SINE B2 1 117 -81 1 1428 32 0 0 0 chr6 110506957 110506989 -39010048 + AT_rich Low_complexity Low_complexity 1 32 0 1 1428 552 15 0 0 chr6 110507236 110507301 -39009736 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1428 926 292 43 90 chr6 110508099 110508608 -39008429 + Lx8 LINE L1 6931 7415 -58 1 1428 387 0 0 0 chr6 110508679 110508722 -39008315 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1428 1026 0 0 0 chr6 110508911 110509025 -39008012 + (TCTCCC)n Simple_repeat Simple_repeat 2 115 0 1 1428 183 42 0 0 chr6 110509053 110509077 -39007960 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2 1428 6377 186 31 11 chr6 110511279 110512845 -39004192 + Lx3C LINE L1 5311 6916 -60 2 1428 195 42 0 0 chr6 110512853 110512877 -39004160 + (AGGGGG)n Simple_repeat Simple_repeat 4 27 0 2 1428 285 29 0 0 chr6 110513058 110513092 -39003945 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1428 396 0 0 0 chr6 110513092 110513135 -39003902 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1428 254 333 24 31 chr6 110513557 110513684 -39003353 + MLT1J1 LTR MaLR 104 229 -215 2 1428 1008 102 0 0 chr6 110514215 110514362 -39002675 + (TC)n Simple_repeat Simple_repeat 2 148 0 2 1428 435 38 0 0 chr6 110514362 110514414 -39002623 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 2 1428 525 32 0 0 chr6 110516352 110516415 -39000622 + (GA)n Simple_repeat Simple_repeat 1 63 0 2 1428 468 0 0 0 chr6 110518130 110518182 -38998855 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1428 267 31 0 0 chr6 110518181 110518213 -38998824 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1428 538 320 16 78 chr6 110518217 110518410 -38998627 - B3A SINE B2 -16 182 2 3 1428 180 152 0 0 chr6 110518494 110518527 -38998510 + (TTA)n Simple_repeat Simple_repeat 2 34 0 3 1428 642 288 4 58 chr6 110518970 110519195 -38997842 + B3 SINE B2 2 214 -2 3 1428 947 9 0 9 chr6 110519460 110519573 -38997464 + (TTC)n Simple_repeat Simple_repeat 1 112 0 3 1428 26 50 0 0 chr6 110520674 110520714 -38996323 + AT_rich Low_complexity Low_complexity 1 40 0 3 1428 534 286 16 16 chr6 110520718 110520846 -38996191 - RSINE1 SINE B4 -33 132 5 3 1428 593 283 21 14 chr6 110520894 110521034 -38996003 - B1_Mur1 SINE Alu -8 141 1 3 1428 1614 138 83 141 chr6 110521041 110521545 -38995492 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1428 6506 148 3 3 chr6 110522329 110523545 -38993492 - Lx2 LINE L1 -404 6593 5379 3 1428 2638 216 18 7 chr6 110523547 110524153 -38992884 + Lx2 LINE L1 4748 5360 -523 3 1428 3027 49 5 8 chr6 110524156 110524546 -38992491 - L1Md_F2 LINE L1 0 6582 6194 4 1428 1187 28 0 0 chr6 110524546 110524687 -38992350 + L1Md_F2 LINE L1 5671 5811 -771 4 1428 555 377 52 15 chr6 110524963 110524986 -38992051 - B4 SINE B4 -6 286 264 4 1428 243 0 0 0 chr6 110524986 110525013 -38992024 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1428 555 377 52 15 chr6 110525013 110525261 -38991776 - B4 SINE B4 -29 263 6 4 1428 370 299 0 0 chr6 110526839 110526996 -38990041 + CT-rich Low_complexity Low_complexity 1 157 0 4 1428 246 32 0 0 chr6 110527161 110527192 -38989845 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1428 21 0 0 0 chr6 110527756 110527777 -38989260 + AT_rich Low_complexity Low_complexity 1 21 0 4 1428 604 234 34 20 chr6 110528127 110528275 -38988762 + B1_Mur4 SINE Alu 1 150 0 4 1428 180 77 0 0 chr6 110528283 110528309 -38988728 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 4 1428 186 273 42 83 chr6 110528591 110528663 -38988374 - MIR3 SINE MIR -26 182 114 4 1428 200 234 14 86 chr6 110528938 110529008 -38988029 + L2a LINE L2 3362 3426 0 5 1428 521 343 41 12 chr6 110529012 110529183 -38987854 + B3A SINE B2 21 196 -2 5 1428 633 333 5 58 chr6 110530132 110530339 -38986698 + B3A SINE B2 3 198 0 5 1428 216 309 18 0 chr6 110530362 110530417 -38986620 + ID4 SINE ID 5 60 -23 5 1428 25 51 0 0 chr6 110530452 110530491 -38986546 + AT_rich Low_complexity Low_complexity 1 39 0 5 1428 649 296 11 0 chr6 110530492 110530671 -38986366 + B3A SINE B2 1 181 -17 5 1428 180 0 0 0 chr6 110531141 110531161 -38985876 + (CAA)n Simple_repeat Simple_repeat 1 20 0 5 1428 23 0 0 0 chr6 110531502 110531525 -38985512 + AT_rich Low_complexity Low_complexity 1 23 0 5 1428 207 0 0 0 chr6 110531598 110531621 -38985416 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1428 672 324 32 5 chr6 110532009 110532195 -38984842 + B3 SINE B2 1 191 -25 5 1428 683 263 24 33 chr6 110532392 110532604 -38984433 + B3 SINE B2 2 211 -5 6 1428 340 292 139 46 chr6 110532737 110532931 -38984106 + B3 SINE B2 3 214 -2 6 1428 512 273 0 67 chr6 110533718 110533867 -38983170 + B3A SINE B2 2 140 -58 6 1428 504 81 0 0 chr6 110533870 110533944 -38983093 + (GA)n Simple_repeat Simple_repeat 2 75 0 6 1428 180 0 0 0 chr6 110534962 110534982 -38982055 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1428 876 165 0 0 chr6 110535197 110535355 -38981682 + CT-rich Low_complexity Low_complexity 3 160 0 6 1428 7116 121 11 1 chr6 110535473 110536990 -38980047 - L1_Mus3 LINE L1 -3 6635 5102 6 1428 1881 157 14 0 chr6 110536980 110537330 -38979707 + L1_Mm LINE L1 4115 4469 -1414 6 1428 344 216 10 0 chr6 110537506 110537608 -38979429 + CT-rich Low_complexity Low_complexity 3 105 0 6 1428 946 312 46 16 chr6 110538129 110538432 -38978605 - RCHARR1 DNA MER1_type -660 314 3 6 1428 231 197 45 0 chr6 110538485 110538551 -38978486 + T-rich Low_complexity Low_complexity 4 72 0 7 1428 1799 204 14 6 chr6 110538612 110538972 -38978065 - ORR1B2 LTR MaLR -4 363 1 7 1428 1022 143 85 9 chr6 110538972 110539184 -38977853 - ORR1B2-int LTR MaLR 0 1509 1282 7 1428 304 79 0 0 chr6 110539186 110539224 -38977813 - HAL1-3A_ME LINE L1 -846 2012 1975 7 1428 483 138 0 0 chr6 110539225 110539312 -38977725 + (TA)n Simple_repeat Simple_repeat 1 87 0 7 1428 737 53 11 0 chr6 110539368 110539463 -38977574 - ORR1A1 LTR MaLR 0 346 251 7 1428 4182 56 23 0 chr6 110539466 110540021 -38977016 - ORR1A1-int LTR MaLR -1224 568 1 7 1428 2482 88 18 0 chr6 110540021 110540078 -38976959 - ORR1A1 LTR MaLR 0 346 290 7 1428 447 0 15 31 chr6 110540078 110540143 -38976894 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 7 1428 2482 88 18 0 chr6 110540143 110540424 -38976613 - ORR1A1 LTR MaLR -57 289 3 7 1428 3320 227 60 5 chr6 110540425 110541208 -38975829 - ORR1A1-int LTR MaLR -273 1236 411 7 1428 275 322 116 16 chr6 110541240 110541488 -38975549 - Tigger13a DNA MER2_type -271 500 219 7 1428 495 48 0 0 chr6 110541488 110541550 -38975487 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 1428 275 322 116 16 chr6 110541550 110541620 -38975417 - Tigger13a DNA MER2_type -553 218 151 7 1428 243 319 0 14 chr6 110542466 110542539 -38974498 + B3A SINE B2 15 86 -112 7 1428 461 17 0 17 chr6 110542572 110542631 -38974406 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1428 17922 180 26 118 chr6 110542707 110546675 -38970362 + L1_Mus4 LINE L1 607 4315 -1571 8 1428 531 0 0 0 chr6 110546675 110546734 -38970303 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 8 1428 17922 187 27 135 chr6 110546734 110546943 -38970094 + L1_Mus4 LINE L1 4316 4316 -1570 8 1428 2422 79 3 61 chr6 110546943 110547320 -38969717 - L1_Mus2 LINE L1 0 6566 6212 8 1428 17922 187 27 135 chr6 110547320 110547417 -38969620 + L1_Mus4 LINE L1 4316 4318 -1568 8 1428 3031 98 24 53 chr6 110547417 110547924 -38969113 + L1_Mus3 LINE L1 6144 6635 -3 8 1428 17922 173 18 89 chr6 110547924 110550341 -38966696 + L1_Mus4 LINE L1 4319 6633 -3 8 1428 339 131 34 0 chr6 110550567 110550632 -38966405 + Lx LINE L1 5284 5359 -527 8 1428 2876 117 14 9 chr6 110550631 110551070 -38965967 + Lx3_Mus LINE L1 6567 7007 -2 8 1428 6436 130 8 64 chr6 110551084 110551538 -38965499 + Lx LINE L1 5359 5799 -84 8 1428 1266 14 0 0 chr6 110551538 110551685 -38965352 + B1_Mm SINE Alu 1 147 0 8 1428 6436 121 13 57 chr6 110551685 110552575 -38964462 + Lx LINE L1 5800 6654 0 8 1428 408 310 20 52 chr6 110553254 110553396 -38963641 + RSINE1 SINE B4 13 151 -14 8 1428 468 0 0 0 chr6 110553396 110553448 -38963589 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1428 26 30 0 0 chr6 110554733 110554766 -38962271 + AT_rich Low_complexity Low_complexity 1 33 0 8 1428 263 303 26 0 chr6 110555048 110555124 -38961913 + Lx8 LINE L1 7261 7338 -135 9 1428 222 62 0 0 chr6 110555213 110555245 -38961792 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 9 1428 2749 251 29 25 chr6 110555297 110555987 -38961050 - Lx5 LINE L1 -1 7049 6357 9 1428 512 270 64 56 chr6 110556013 110556165 -38960872 - MER31-int LTR ERV1 -1172 3764 3602 9 1428 1747 94 62 8 chr6 110556165 110556422 -38960615 + L1Md_F2 LINE L1 6302 6572 -10 9 1428 445 270 64 56 chr6 110556422 110556536 -38960501 - MER31-int LTR ERV1 -1335 3601 3496 9 1428 502 276 102 60 chr6 110556612 110556778 -38960259 - B3A SINE B2 0 198 26 9 1428 709 314 49 36 chr6 110557015 110557673 -38959364 - MER31-int LTR ERV1 -1877 3059 2394 9 1428 503 132 11 0 chr6 110557798 110557889 -38959148 + (TC)n Simple_repeat Simple_repeat 2 93 0 9 1428 637 182 11 22 chr6 110557891 110558071 -38958966 + CT-rich Low_complexity Low_complexity 3 180 0 9 1428 257 217 0 80 chr6 110558202 110558277 -38958760 + ID_B1 SINE B4 127 195 -29 9 1428 782 259 68 39 chr6 110558427 110558765 -38958272 - MER31-int LTR ERV1 -2847 2089 1742 9 1428 489 301 31 0 chr6 110558780 110558918 -38958119 - B3 SINE B2 -7 191 38 9 1428 965 42 0 0 chr6 110558918 110559038 -38957999 + L1Md_F2 LINE L1 5467 5586 -297 1 1428 7922 53 1 3 chr6 110559038 110560036 -38957001 + L1Md_F2 LINE L1 5587 6582 0 1 1428 1113 273 23 49 chr6 110560060 110560410 -38956627 + Lx5 LINE L1 6694 7034 -16 1 1428 22 0 0 0 chr6 110560414 110560436 -38956601 + AT_rich Low_complexity Low_complexity 1 22 0 1 1428 273 163 0 0 chr6 110560436 110560479 -38956558 - B2_Mm2 SINE B2 -150 45 3 1 1428 409 311 81 85 chr6 110561051 110561262 -38955775 - B3 SINE B2 -6 210 1 1 1428 21 0 0 0 chr6 110562030 110562051 -38954986 + AT_rich Low_complexity Low_complexity 1 21 0 1 1428 307 235 184 28 chr6 110562774 110562933 -38954104 - MER34 LTR ERV1 -3 568 380 1 1428 351 98 0 0 chr6 110563007 110563068 -38953969 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 1 1428 372 364 102 29 chr6 110563090 110563336 -38953701 - B4A SINE B4 -28 264 1 1 1428 381 302 127 7 chr6 110563448 110563598 -38953439 + MTD LTR MaLR 184 351 -68 1 1428 5197 108 51 22 chr6 110563622 110564452 -38952585 - Lx LINE L1 -6 6648 5795 1 1428 4127 171 24 8 chr6 110564452 110565248 -38951789 + Lx LINE L1 5006 5814 -69 1 1428 3311 74 0 2 chr6 110565703 110566136 -38950901 + L1_Mus1 LINE L1 6136 6567 0 1 1428 756 176 0 0 chr6 110566152 110566287 -38950750 + GA-rich Low_complexity Low_complexity 3 137 0 1 1428 1139 117 0 6 chr6 110566287 110566468 -38950569 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1428 756 176 0 0 chr6 110566468 110566480 -38950557 + polypurine Low_complexity Low_complexity 138 149 0 1 1428 22 56 0 0 chr6 110567001 110567037 -38950000 + AT_rich Low_complexity Low_complexity 1 36 0 1 1428 327 324 82 51 chr6 110567418 110567613 -38949424 - MER20 DNA MER1_type -16 203 3 1 1428 3647 110 2 2 chr6 110568509 110569085 -38947952 - L1_Mm LINE L1 -1677 4206 3631 1 1428 3388 89 2 2 chr6 110569085 110569546 -38947491 + L1_Mus1 LINE L1 6106 6566 -1 1 1428 243 0 0 0 chr6 110569568 110569595 -38947442 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1 1428 522 356 46 0 chr6 110569603 110569797 -38947240 - ID_B1 SINE B4 -21 203 1 1 1428 311 96 0 19 chr6 110569808 110569861 -38947176 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1 1428 378 403 0 0 chr6 110569877 110570011 -38947026 - B3A SINE B2 -38 160 27 1 1428 789 127 24 0 chr6 110570021 110570147 -38946890 - L1_Mus1 LINE L1 0 6567 6439 1 1428 825 80 0 0 chr6 110570147 110570260 -38946777 + L1_Mus1 LINE L1 6265 6377 -190 1 1428 228 35 0 0 chr6 110571156 110571185 -38945852 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 1 1428 348 326 0 0 chr6 110571187 110571276 -38945761 + RSINE1 SINE B4 4 92 -73 1 1428 468 99 0 0 chr6 110571323 110571394 -38945643 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1428 361 105 0 71 chr6 110571397 110571510 -38945527 + (CAGAGA)n Simple_repeat Simple_repeat 2 106 0 1 1428 641 271 42 78 chr6 110572168 110572360 -38944677 - B3A SINE B2 -10 185 1 1 1428 709 265 7 26 chr6 110572509 110572664 -38944373 - RSINE1 SINE B4 -11 154 3 1 1428 346 307 50 141 chr6 110572684 110572961 -38944076 + ORR1E LTR MaLR 93 344 -15 1 1428 22 35 0 0 chr6 110573060 110573089 -38943948 + AT_rich Low_complexity Low_complexity 1 29 0 1 1428 22 35 0 0 chr6 110573286 110573315 -38943722 + AT_rich Low_complexity Low_complexity 1 29 0 1 1428 547 217 14 0 chr6 110573315 110573458 -38943579 - Lx3A LINE L1 0 6981 6837 1 1428 312 301 25 50 chr6 110573463 110573582 -38943455 - B1_Mus1 SINE Alu -29 119 4 1 1428 256 273 18 0 chr6 110573603 110573658 -38943379 + BLACKJACK DNA AcHobo 2889 2944 0 1 1428 390 21 0 0 chr6 110573670 110573717 -38943320 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1428 357 345 65 35 chr6 110573794 110573995 -38943042 - B3 SINE B2 -6 210 4 1 1428 686 299 73 40 chr6 110574109 110574632 -38942405 - L1MA5A LINE L1 -368 5932 5395 1 1428 797 313 142 28 chr6 110574791 110575768 -38941269 - L1MA5A LINE L1 -968 5175 4087 1 1428 275 326 99 10 chr6 110576067 110576259 -38940778 - L1MC3 LINE L1 -234 7551 7343 1 1428 510 320 0 0 chr6 110576322 110576444 -38940593 - RSINE1 SINE B4 -38 127 6 1 1428 427 338 55 0 chr6 110576595 110576740 -38940297 - B4A SINE B4 -78 214 62 1 1428 2464 62 6 6 chr6 110576738 110577064 -38939973 + IAPEY2_LTR LTR ERVK 32 357 0 1 1428 285 306 131 34 chr6 110577490 110577666 -38939371 + B3A SINE B2 1 193 -5 1 1428 5829 156 40 17 chr6 110578117 110579164 -38937873 - Lx2 LINE L1 -12 6985 5915 1 1428 378 320 0 23 chr6 110579304 110579432 -38937605 + RMER15 LTR ERVL 295 419 -156 1 1428 430 344 105 11 chr6 110579548 110579739 -38937298 + B3 SINE B2 4 212 -4 1 1428 758 337 19 33 chr6 110579899 110580328 -38936709 - Lx8 LINE L1 -181 7292 6870 1 1428 351 65 0 0 chr6 110580501 110580547 -38936490 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1 1428 206 32 32 0 chr6 110580591 110580622 -38936415 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1428 21 0 0 0 chr6 110580824 110580845 -38936192 + AT_rich Low_complexity Low_complexity 1 21 0 1 1428 385 313 40 15 chr6 110580856 110581054 -38935983 - L1MB8 LINE L1 -1 6177 5975 1 1428 420 283 199 49 chr6 110581092 110581703 -38935334 - L1M5 LINE L1 -2691 3455 2739 1 1428 352 336 63 8 chr6 110581960 110582086 -38934951 - RSINE1 SINE B4 -30 135 3 1 1428 3126 46 23 0 chr6 110582172 110582560 -38934477 - L1Md_F3 LINE L1 -14 6570 6174 1 1428 501 337 123 94 chr6 110582562 110583017 -38934020 - MLT1E3 LTR MaLR -46 578 111 1 1428 423 319 44 77 chr6 110583255 110583438 -38933599 + ID_B1 SINE B4 10 186 -38 1 1428 186 239 0 0 chr6 110583752 110583823 -38933214 + GA-rich Low_complexity Low_complexity 2 72 0 1 1428 241 364 7 7 chr6 110584222 110584377 -38932660 + Lx9 LINE L1 7293 7447 -197 1 1428 624 161 0 0 chr6 110585187 110585330 -38931707 + CT-rich Low_complexity Low_complexity 2 144 0 1 1428 246 32 0 0 chr6 110585331 110585362 -38931675 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 1 1428 252 0 0 0 chr6 110585731 110585759 -38931278 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1428 420 259 122 0 chr6 110585759 110585890 -38931147 - B1_Mur1 SINE Alu 0 149 3 1 1428 702 343 43 36 chr6 110586208 110586419 -38930618 + B4A SINE B4 10 216 -76 1 1428 333 0 0 0 chr6 110586419 110586456 -38930581 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 1428 702 343 43 36 chr6 110586456 110586522 -38930515 + B4A SINE B4 217 288 -4 1 1428 351 65 0 0 chr6 110586584 110586630 -38930407 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1 1428 991 38 0 8 chr6 110586700 110586834 -38930203 + L1Md_F2 LINE L1 6438 6570 -12 1 1428 1398 59 0 0 chr6 110587189 110587375 -38929662 + L1Md_F2 LINE L1 6397 6582 0 1 1428 355 262 12 12 chr6 110587378 110587463 -38929574 + ID_B1 SINE B4 122 206 -18 1 1428 279 0 0 0 chr6 110587474 110587505 -38929532 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1428 251 389 41 21 chr6 110587507 110587701 -38929336 - MLT1K LTR MaLR -47 548 351 1 1428 2335 183 40 37 chr6 110587864 110588318 -38928719 + RMER13A LTR ERVK 1 455 -405 1 1428 647 279 13 13 chr6 110588302 110588458 -38928579 + RMER13A LTR ERVK 667 822 -38 1 1428 549 316 97 0 chr6 110588761 110588795 -38928242 - B3 SINE B2 0 216 183 1 1428 522 0 0 0 chr6 110588795 110588853 -38928184 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1428 549 316 97 0 chr6 110588853 110589014 -38928023 - B3 SINE B2 -34 182 4 1 1428 537 301 45 75 chr6 110589034 110589235 -38927802 - B3A SINE B2 -1 197 3 1 1428 1135 96 0 0 chr6 110589464 110589610 -38927427 + B1_Mus1 SINE Alu 1 146 -2 1 1428 432 0 0 0 chr6 110589610 110589658 -38927379 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 1428 444 307 39 0 chr6 110590030 110590157 -38926880 - B3 SINE B2 0 216 85 1 1428 272 333 68 11 chr6 110590154 110590242 -38926795 + ID_B1 SINE B4 40 132 -92 1 1428 1060 70 7 40 chr6 110590272 110590421 -38926616 - B1_Mus1 SINE Alu -3 145 2 1 1428 493 337 38 22 chr6 110590563 110590748 -38926289 + B3A SINE B2 7 194 -4 1 1428 484 299 83 12 chr6 110590821 110590990 -38926047 + B3A SINE B2 14 194 -4 1 1428 521 235 63 117 chr6 110591050 110591130 -38925907 + B3 SINE B2 1 66 -150 1 1428 414 0 0 0 chr6 110591130 110591176 -38925861 + (TTGG)n Simple_repeat Simple_repeat 3 48 0 1 1428 521 235 63 117 chr6 110591176 110591317 -38925720 + B3 SINE B2 67 210 -6 1 1428 263 317 19 29 chr6 110592128 110592232 -38924805 - L2c LINE L2 -53 3334 3232 1 1428 2211 194 2 14 chr6 110592275 110592699 -38924338 - MTC LTR MaLR -2 419 1 1 1428 403 277 51 43 chr6 110594142 110594259 -38922778 - MIR3 SINE MIR -25 183 66 1 1428 264 149 0 0 chr6 110595485 110595532 -38921505 + (AGGGGG)n Simple_repeat Simple_repeat 4 50 0 1 1428 342 0 0 0 chr6 110598102 110598140 -38918897 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1428 189 0 0 0 chr6 110598769 110598790 -38918247 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1428 573 55 0 0 chr6 110599032 110599105 -38917932 + (T)n Simple_repeat Simple_repeat 1 73 0 1 1428 189 224 0 0 chr6 110599440 110599498 -38917539 + CT-rich Low_complexity Low_complexity 1 58 0 1 1428 555 16 0 0 chr6 110600098 110600162 -38916875 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 1428 387 89 0 0 chr6 110600162 110600217 -38916820 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1428 478 250 10 10 chr6 110600887 110600988 -38916049 + B4A SINE B4 183 283 -9 1 1428 239 262 0 15 chr6 110600991 110601057 -38915980 + (CATA)n Simple_repeat Simple_repeat 2 66 0 1 1428 285 29 0 0 chr6 110601116 110601150 -38915887 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1428 431 301 27 20 chr6 110601793 110601942 -38915095 + RSINE1 SINE B4 4 153 -12 1 1428 563 0 15 0 chr6 110601947 110602014 -38915023 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1428 355 359 25 0 chr6 110604155 110604314 -38912723 + RSINE1 SINE B4 3 165 0 1 1428 29 0 0 0 chr6 110604332 110604361 -38912676 + AT_rich Low_complexity Low_complexity 1 29 0 2 1428 222 208 0 0 chr6 110604624 110604677 -38912360 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1428 423 0 0 0 chr6 110604713 110604760 -38912277 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 2 1428 418 333 0 16 chr6 110604874 110604999 -38912038 - B1F2 SINE Alu -13 136 14 2 1428 189 304 102 76 chr6 110605402 110605559 -38911478 - L2a LINE L2 -261 3165 3005 2 1428 291 54 0 0 chr6 110605641 110605678 -38911359 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 2 1428 259 361 137 23 chr6 110605690 110606076 -38910961 - L2a LINE L2 -556 2863 2434 2 1428 5405 120 43 23 chr6 110606118 110608043 -38908994 - Lx3_Mus LINE L1 -2 7007 5027 2 1428 334 348 0 0 chr6 110608994 110609106 -38907931 + PB1D10 SINE Alu 1 112 -5 2 1428 607 342 57 53 chr6 110610943 110611224 -38905813 - B4 SINE B4 -10 282 1 2 1428 531 45 0 0 chr6 110611743 110611809 -38905228 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 2 1428 601 333 0 0 chr6 110611872 110612019 -38905018 - RSINE1 SINE B4 -3 162 16 2 1428 310 357 71 0 chr6 110612086 110612212 -38904825 - B3 SINE B2 -41 175 41 2 1428 413 273 27 18 chr6 110612252 110612364 -38904673 - PB1D7 SINE Alu -7 113 1 2 1428 246 174 0 0 chr6 110612385 110612431 -38904606 + GA-rich Low_complexity Low_complexity 2 47 0 2 1428 387 41 0 0 chr6 110613560 110613609 -38903428 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1428 433 366 82 46 chr6 110614230 110614511 -38902526 + B4A SINE B4 1 291 -1 2 1428 196 255 39 0 chr6 110614770 110614821 -38902216 - MER5A DNA MER1_type -44 145 93 2 1428 196 367 99 11 chr6 110615013 110615195 -38901842 - MIR SINE MIR -37 225 28 2 1428 278 277 127 13 chr6 110615205 110615362 -38901675 - L1MA7 LINE L1 -2 6289 6115 2 1428 195 42 0 0 chr6 110616893 110616917 -38900120 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 2 1428 3723 146 65 71 chr6 110618145 110618874 -38898163 + RMER19A LTR ERVK 14 737 0 2 1428 474 33 0 0 chr6 110619364 110619424 -38897613 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1428 651 57 0 0 chr6 110619884 110619972 -38897065 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 1428 241 313 88 0 chr6 110621491 110621638 -38895399 - L1MA9 LINE L1 -1 6311 6152 2 1428 859 197 88 1 chr6 110622100 110622349 -38894688 - Lx2B LINE L1 -10 6998 6697 2 1428 241 282 38 36 chr6 110622669 110622753 -38894284 - MIRb SINE MIR -27 241 151 2 1428 189 321 147 15 chr6 110623885 110624021 -38893016 - MIR SINE MIR -62 200 47 2 1428 186 43 0 0 chr6 110624600 110624623 -38892414 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2 1429 1730 113 11 0 chr6 110624773 110625048 -38891989 + Lx LINE L1 6377 6654 0 2 1429 450 0 0 0 chr6 110625207 110625257 -38891780 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1429 729 332 5 10 chr6 110625297 110625504 -38891533 - ID_B1 SINE B4 -11 213 8 2 1429 4916 193 28 16 chr6 110626102 110627435 -38889602 - Lx3C LINE L1 0 7000 5587 2 1429 1077 62 20 27 chr6 110627435 110627583 -38889454 - B1_Mus2 SINE Alu 0 147 1 2 1429 3962 162 6 47 chr6 110627583 110628045 -38888992 - Lx3C LINE L1 -296 5590 5136 2 1429 191 156 0 43 chr6 110628146 110628193 -38888844 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 2 1429 29 0 0 0 chr6 110629347 110629376 -38887661 + AT_rich Low_complexity Low_complexity 1 29 0 2 1429 428 306 56 39 chr6 110629470 110629755 -38887282 - Lx9 LINE L1 -107 7537 7248 2 1429 411 331 147 24 chr6 110631543 110631713 -38885324 + B3A SINE B2 2 192 -6 2 1429 420 37 0 0 chr6 110631850 110631904 -38885133 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1429 373 306 45 91 chr6 110632030 110632206 -38884831 - B4A SINE B4 -120 172 5 2 1429 676 294 73 31 chr6 110633672 110633932 -38883105 + B4 SINE B4 4 274 -18 2 1429 543 16 0 0 chr6 110633986 110634050 -38882987 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1429 41 82 0 0 chr6 110634496 110634593 -38882444 + AT_rich Low_complexity Low_complexity 1 97 0 2 1429 24 53 0 0 chr6 110634716 110634754 -38882283 + AT_rich Low_complexity Low_complexity 1 38 0 2 1429 928 342 48 24 chr6 110634786 110635244 -38881793 - Lx8 LINE L1 -77 7396 6928 2 1429 578 294 0 35 chr6 110635293 110635462 -38881575 - RSINE1 SINE B4 0 165 3 2 1429 648 270 62 33 chr6 110636407 110636618 -38880419 + ID_B1 SINE B4 5 221 -3 2 1429 1875 313 88 20 chr6 110637324 110637765 -38879272 - Lx8 LINE L1 -5 7468 6967 2 1429 306 0 0 0 chr6 110637765 110637799 -38879238 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1429 462 18 0 0 chr6 110637799 110637853 -38879184 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1429 1875 313 88 20 chr6 110637853 110638346 -38878691 - Lx8 LINE L1 -507 6966 6471 2 1429 251 240 122 50 chr6 110638596 110638776 -38878261 - L1MA5A LINE L1 -304 5993 5801 2 1429 783 55 0 0 chr6 110638963 110639072 -38877965 + (TC)n Simple_repeat Simple_repeat 2 110 0 2 1429 3192 75 25 11 chr6 110639212 110639660 -38877377 - L1Md_F2 LINE L1 0 6582 6129 2 1429 273 190 10 20 chr6 110639660 110639762 -38877275 + (TA)n Simple_repeat Simple_repeat 2 102 0 2 1429 393 325 20 25 chr6 110640754 110640944 -38876093 + MIRc SINE MIR 6 200 -68 2 1429 565 337 62 23 chr6 110641206 110641464 -38875573 - B4 SINE B4 -22 270 3 2 1429 498 17 0 0 chr6 110641527 110641586 -38875451 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1429 312 200 0 0 chr6 110641586 110641651 -38875386 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 1429 749 308 49 20 chr6 110642739 110642984 -38874053 + B4 SINE B4 5 256 -36 2 1429 387 0 0 0 chr6 110642984 110643027 -38874010 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1429 364 311 6 90 chr6 110643998 110644164 -38872873 + ID_B1 SINE B4 67 218 -6 2 1429 531 290 7 21 chr6 110644028 110644169 -38872868 + B1F1 SINE Alu 10 148 -1 2 1429 522 341 14 0 chr6 110645506 110645644 -38871393 + ID_B1 SINE B4 10 149 -75 2 1429 230 382 0 38 chr6 110645584 110645663 -38871374 + PB1D10 SINE Alu 9 84 -33 2 1429 267 306 163 39 chr6 110646150 110646303 -38870734 + ORR1E LTR MaLR 4 175 -184 2 1429 9131 4 0 0 chr6 110646671 110648387 -38868650 - L1Md_A LINE L1 0 6582 4867 2 1429 475 309 156 49 chr6 110648571 110648878 -38868159 - MTD LTR MaLR 0 400 79 2 1429 1036 205 77 0 chr6 110648878 110649112 -38867925 - L1_Mur1 LINE L1 -286 5600 5349 2 1429 12891 152 6 9 chr6 110649115 110652267 -38864770 + L1_Mus4 LINE L1 3490 6630 -6 2 1429 579 29 0 0 chr6 110653210 110653279 -38863758 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1429 189 407 49 12 chr6 110653886 110653968 -38863069 - L2b LINE L2 -20 3355 3271 2 1429 976 366 28 30 chr6 110654420 110655085 -38861952 - Lx8 LINE L1 -45 7428 6745 2 1429 270 274 11 87 chr6 110655097 110655189 -38861848 - MLT1B LTR MaLR -24 366 282 2 1429 462 18 0 0 chr6 110655880 110655935 -38861102 + (TATTG)n Simple_repeat Simple_repeat 1 55 0 2 1429 621 0 0 0 chr6 110655938 110656007 -38861030 + (TTCTG)n Simple_repeat Simple_repeat 4 72 0 2 1429 981 83 0 0 chr6 110656010 110656142 -38860895 - B1_Mus1 SINE Alu -15 133 2 2 1429 252 271 81 36 chr6 110656406 110656517 -38860520 + MIR SINE MIR 70 185 -77 2 1429 769 302 76 32 chr6 110656533 110656875 -38860162 - ORR1E LTR MaLR 0 359 3 2 1429 489 329 6 75 chr6 110658587 110658748 -38858289 - RSINE1 SINE B4 -12 153 4 2 1429 648 71 17 34 chr6 110659027 110659144 -38857893 + (TCTCCC)n Simple_repeat Simple_repeat 6 120 0 2 1429 22 56 0 0 chr6 110659191 110659227 -38857810 + AT_rich Low_complexity Low_complexity 1 36 0 2 1429 722 312 84 30 chr6 110660722 110661056 -38855981 - ORR1E LTR MaLR -7 352 1 2 1429 1194 282 25 15 chr6 110662061 110662385 -38854652 - MTEb LTR MaLR -52 327 1 2 1429 292 370 58 13 chr6 110663414 110663570 -38853467 + MER5B DNA MER1_type 13 175 -3 2 1429 243 75 94 0 chr6 110664450 110664503 -38852534 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 2 1429 22 56 0 0 chr6 110664533 110664569 -38852468 + AT_rich Low_complexity Low_complexity 1 36 0 2 1429 22 70 0 0 chr6 110664989 110665032 -38852005 + AT_rich Low_complexity Low_complexity 1 43 0 2 1429 324 0 0 0 chr6 110665034 110665070 -38851967 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2 1429 3436 142 0 23 chr6 110665070 110665632 -38851405 - Lx3A LINE L1 -15 6966 6418 2 1429 285 348 49 42 chr6 110665728 110665872 -38851165 - B3A SINE B2 -6 192 48 2 1429 1084 214 112 19 chr6 110665874 110666141 -38850896 - RMER13B LTR ERVK 0 908 617 2 1429 1015 139 0 11 chr6 110666230 110666412 -38850625 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1429 466 183 224 9 chr6 110666416 110666532 -38850505 - B1_Mur4 SINE Alu -6 144 4 2 1429 306 0 0 0 chr6 110666572 110666606 -38850431 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1429 27 29 0 0 chr6 110666727 110666761 -38850276 + AT_rich Low_complexity Low_complexity 1 34 0 2 1429 906 285 37 18 chr6 110667194 110667466 -38849571 - Lx8 LINE L1 -728 6745 6469 2 1429 775 298 0 33 chr6 110668606 110668818 -38848219 + B3 SINE B2 11 215 -1 2 1429 228 389 0 11 chr6 110670511 110670602 -38846435 + MER117 DNA MER1_type 74 163 -34 2 1429 459 95 0 0 chr6 110672411 110672485 -38844552 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1429 402 67 0 39 chr6 110673733 110673811 -38843226 + (TTTTA)n Simple_repeat Simple_repeat 4 78 0 2 1429 473 322 0 14 chr6 110673835 110673983 -38843054 - RSINE1 SINE B4 -18 147 2 2 1429 761 133 0 7 chr6 110674057 110674193 -38842844 + (GGA)n Simple_repeat Simple_repeat 2 136 0 3 1429 291 175 0 0 chr6 110674765 110674822 -38842215 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1429 205 161 0 0 chr6 110675115 110675146 -38841891 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 3 1429 237 146 0 0 chr6 110675153 110675201 -38841836 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1429 6692 134 26 8 chr6 110676039 110677641 -38839396 + Lx LINE L1 5013 6653 -1 3 1429 414 273 59 94 chr6 110677991 110678161 -38838876 - RSINE1 SINE B4 0 165 2 3 1429 406 279 10 45 chr6 110678210 110678409 -38838628 - L1ME1 LINE L1 -290 6062 5871 3 1429 357 299 92 14 chr6 110678683 110678900 -38838137 - L1ME1 LINE L1 -557 5795 5562 3 1429 257 305 95 25 chr6 110678953 110679111 -38837926 - L1MD LINE L1 -803 5343 5175 3 1429 695 59 10 0 chr6 110679146 110679247 -38837790 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 3 1429 229 308 106 15 chr6 110679310 110679376 -38837661 + MTE2a LTR MaLR 69 140 -239 3 1429 1620 134 103 3 chr6 110679407 110679698 -38837339 + L1_Mm LINE L1 4802 5121 -762 3 1429 342 315 93 23 chr6 110679813 110680287 -38836750 - L1ME1 LINE L1 -1352 4967 4461 3 1429 287 261 53 144 chr6 110680379 110680567 -38836470 - B2_Mm2 SINE B2 -24 171 1 3 1429 929 281 13 19 chr6 110680604 110680920 -38836117 - L1ME1 LINE L1 -2130 4189 3876 3 1429 276 30 0 0 chr6 110680926 110680959 -38836078 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 3 1429 594 221 0 0 chr6 110680966 110681102 -38835935 + T-rich Low_complexity Low_complexity 1 136 0 3 1429 970 143 0 0 chr6 110681103 110681250 -38835787 - B1_Mus2 SINE Alu 0 147 1 3 1429 322 141 62 0 chr6 110681313 110681377 -38835660 - L1MC LINE L1 -2483 3663 3596 3 1429 437 320 114 39 chr6 110681577 110681964 -38835073 - L1ME1 LINE L1 -2803 3516 3101 3 1429 23 78 0 0 chr6 110681987 110682038 -38834999 + AT_rich Low_complexity Low_complexity 1 51 0 3 1429 648 308 129 38 chr6 110682481 110683008 -38834029 - L1ME1 LINE L1 -5620 780 206 3 1429 654 95 0 0 chr6 110683566 110683661 -38833376 + (TC)n Simple_repeat Simple_repeat 1 95 0 3 1429 445 303 36 89 chr6 110683980 110684175 -38832862 - B3A SINE B2 -8 208 8 3 1429 197 297 31 0 chr6 110684557 110684621 -38832416 + MIRb SINE MIR 171 236 -32 3 1429 605 14 0 13 chr6 110684781 110684856 -38832181 + (TTATA)n Simple_repeat Simple_repeat 5 78 0 3 1429 1508 224 43 14 chr6 110684859 110685230 -38831807 - Lx9 LINE L1 -227 7417 7036 3 1429 287 98 39 0 chr6 110686021 110686072 -38830965 + (CAAAT)n Simple_repeat Simple_repeat 3 55 0 3 1429 1126 54 0 0 chr6 110686141 110686288 -38830749 - B1_Mus1 SINE Alu 0 148 2 3 1429 442 219 66 93 chr6 110686288 110686327 -38830710 - MT2B LTR ERVL -449 152 118 3 1429 541 319 9 40 chr6 110686564 110686773 -38830264 + B3A SINE B2 11 216 0 3 1429 1056 92 14 0 chr6 110686780 110686922 -38830115 + B1_Mur4 SINE Alu 1 144 -6 3 1429 432 0 0 0 chr6 110688159 110688207 -38828830 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1429 375 23 0 0 chr6 110688207 110688250 -38828787 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1429 216 374 83 30 chr6 110688513 110688681 -38828356 + B3 SINE B2 27 203 -13 3 1429 838 43 17 0 chr6 110688700 110688815 -38828222 + (TA)n Simple_repeat Simple_repeat 2 118 0 3 1429 768 307 0 5 chr6 110688815 110689008 -38828029 - B3 SINE B2 -24 192 1 3 1429 520 343 28 48 chr6 110689684 110689932 -38827105 + Tigger15a DNA TcMar 73 315 -400 3 1429 1447 221 191 37 chr6 110689950 110690438 -38826599 + RMER4B LTR ERVK 17 579 -6 3 1429 311 179 0 15 chr6 110690575 110690614 -38826423 + polypyrimidine Low_complexity Low_complexity 29 67 0 3 1429 878 87 40 0 chr6 110690614 110690787 -38826250 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 1429 311 179 0 15 chr6 110690787 110690815 -38826222 + polypyrimidine Low_complexity Low_complexity 1 28 0 3 1429 254 26 0 50 chr6 110690815 110690855 -38826182 + (TTG)n Simple_repeat Simple_repeat 1 38 0 3 1429 228 67 0 0 chr6 110690855 110690885 -38826152 + (TGG)n Simple_repeat Simple_repeat 3 32 0 3 1429 306 0 0 0 chr6 110690885 110690919 -38826118 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1429 368 354 8 30 chr6 110690923 110691054 -38825983 - RSINE1 SINE B4 -27 138 11 3 1429 234 269 45 0 chr6 110693297 110693364 -38823673 + MIRm SINE MIR 205 274 -2 3 1429 381 200 0 0 chr6 110693412 110693487 -38823550 + U2 snRNA snRNA 1 75 -113 3 1429 248 356 10 0 chr6 110693977 110694081 -38822956 + PB1D7 SINE Alu 3 107 -13 3 1429 209 194 0 0 chr6 110694282 110694318 -38822719 + GA-rich Low_complexity Low_complexity 4 39 0 3 1429 674 309 72 22 chr6 110695291 110695616 -38821421 + MTEa LTR MaLR 1 379 0 3 1429 1970 344 56 8 chr6 110696221 110697075 -38819962 - Lx8 LINE L1 -379 7094 6200 3 1429 439 284 83 67 chr6 110697350 110697663 -38819374 - L1MA5 LINE L1 -1 6299 5982 3 1429 875 98 8 0 chr6 110698279 110698411 -38818626 + (TC)n Simple_repeat Simple_repeat 2 134 0 3 1429 189 0 0 0 chr6 110698540 110698561 -38818476 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 3 1429 1666 61 0 9 chr6 110699305 110699521 -38817516 - L1Md_F2 LINE L1 -168 6414 6201 3 1429 1155 67 0 18 chr6 110699521 110699688 -38817349 + L1Md_F2 LINE L1 6417 6580 -2 3 1429 298 302 84 9 chr6 110699758 110699865 -38817172 + B3 SINE B2 3 117 -99 3 1429 315 317 220 18 chr6 110701002 110701312 -38815725 - MLT1B LTR MaLR 0 467 90 3 1429 1893 239 19 148 chr6 110701312 110702014 -38815023 - RMER19C LTR ERVK 0 611 1 3 1429 315 319 90 36 chr6 110702014 110702035 -38815002 - MLT1B LTR MaLR -301 89 67 3 1429 483 18 0 0 chr6 110702163 110702219 -38814818 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1429 357 24 0 0 chr6 110702220 110702262 -38814775 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 1429 347 0 23 0 chr6 110702317 110702360 -38814677 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1429 324 247 71 0 chr6 110702365 110702450 -38814587 - Lx7 LINE L1 -361 7335 7245 3 1429 588 29 0 0 chr6 110703301 110703371 -38813666 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 1429 185 138 61 24 chr6 110703405 110703487 -38813550 + (TA)n Simple_repeat Simple_repeat 2 86 0 3 1429 198 71 0 0 chr6 110703524 110703552 -38813485 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1429 224 325 67 37 chr6 110703734 110703868 -38813169 - MIRb SINE MIR -58 210 73 3 1429 261 83 0 0 chr6 110704018 110704054 -38812983 + (ATG)n Simple_repeat Simple_repeat 3 38 0 3 1429 605 98 26 9 chr6 110704378 110704491 -38812546 + (GA)n Simple_repeat Simple_repeat 1 115 0 3 1429 198 150 0 0 chr6 110704663 110704703 -38812334 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1429 397 289 16 18 chr6 110705356 110705484 -38811553 + MTD LTR MaLR 42 174 -247 3 1429 258 204 19 0 chr6 110705478 110705532 -38811505 - B3A SINE B2 -139 59 5 3 1429 351 0 0 0 chr6 110705549 110705588 -38811449 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 1429 872 286 48 5 chr6 110705588 110705795 -38811242 - B4A SINE B4 -76 216 1 3 1429 216 262 0 101 chr6 110705799 110705888 -38811149 - MIRb SINE MIR -53 215 136 3 1429 252 190 207 0 chr6 110706753 110706834 -38810203 + MIRb SINE MIR 53 155 -113 3 1429 219 159 23 0 chr6 110706931 110706975 -38810062 + (CAT)n Simple_repeat Simple_repeat 3 47 0 3 1429 231 347 158 66 chr6 110707087 110707976 -38809061 - L2 LINE L2 -357 3062 2093 3 1429 346 349 67 62 chr6 110707997 110708080 -38808957 + B4 SINE B4 50 142 -150 3 1429 273 29 0 0 chr6 110708080 110708114 -38808923 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1429 288 0 0 0 chr6 110708114 110708145 -38808892 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 1429 346 349 67 62 chr6 110708145 110708268 -38808769 + B4 SINE B4 143 257 -35 3 1429 6069 123 2 4 chr6 110708343 110709272 -38807765 - L1_Mus3 LINE L1 -172 5711 4785 3 1429 6657 84 8 7 chr6 110709272 110710192 -38806845 + L1_Mus3 LINE L1 5711 6631 -7 3 1429 280 0 0 143 chr6 110711217 110711357 -38805680 + (AGATG)n Simple_repeat Simple_repeat 2 121 0 3 1429 287 227 18 35 chr6 110711364 110711478 -38805559 + (ATGGTG)n Simple_repeat Simple_repeat 5 116 0 3 1429 360 0 0 0 chr6 110711649 110711689 -38805348 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1429 302 277 36 12 chr6 110711704 110711788 -38805249 - B1F SINE Alu -58 91 6 3 1429 24 0 0 0 chr6 110711796 110711820 -38805217 + AT_rich Low_complexity Low_complexity 1 24 0 3 1429 572 203 8 17 chr6 110712893 110713013 -38804024 + Lx4B LINE L1 6212 6330 -728 3 1429 656 115 51 34 chr6 110713016 110713133 -38803904 + B1_Mus1 SINE Alu 30 148 0 3 1429 3841 179 7 21 chr6 110713157 110713881 -38803156 + Lx4B LINE L1 6338 7051 -7 3 1429 333 304 66 72 chr6 110716953 110717134 -38799903 - B3A SINE B2 -16 182 3 3 1429 480 348 49 50 chr6 110717793 110718303 -38798734 - LTR33 LTR ERVL -4 516 6 3 1429 545 299 82 88 chr6 110718804 110719098 -38797939 - B4A SINE B4 0 292 1 3 1429 624 274 54 27 chr6 110720153 110720337 -38796700 - B3 SINE B2 0 216 28 3 1429 549 0 0 0 chr6 110720400 110720461 -38796576 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1429 438 119 0 0 chr6 110720461 110720544 -38796493 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 1429 672 356 29 40 chr6 110720546 110720824 -38796213 - B4 SINE B4 -6 286 12 3 1429 336 294 87 14 chr6 110720840 110720978 -38796059 - B1F SINE Alu -1 148 1 3 1429 338 320 82 38 chr6 110721375 110721534 -38795503 - MER58A DNA MER1_type -47 177 12 3 1429 540 319 113 9 chr6 110721793 110722005 -38795032 + B4 SINE B4 7 240 -52 3 1429 299 331 76 14 chr6 110723600 110723744 -38793293 + MIRb SINE MIR 50 202 -66 3 1429 640 327 82 19 chr6 110723803 110724059 -38792978 - MTEa-int LTR MaLR -1308 272 1 3 1429 250 232 18 0 chr6 110724043 110724099 -38792938 - MTEa LTR MaLR 0 379 323 3 1429 954 109 7 0 chr6 110724099 110724237 -38792800 + B1_Mus2 SINE Alu 2 140 -7 3 1429 1150 307 32 15 chr6 110724255 110724596 -38792441 - MTEa LTR MaLR -28 351 5 3 1429 955 256 119 89 chr6 110724633 110725028 -38792009 + MTD LTR MaLR 1 407 -12 3 1429 637 275 16 38 chr6 110726406 110726591 -38790446 + B3A SINE B2 2 182 -16 3 1429 329 135 19 0 chr6 110726593 110726645 -38790392 + HAL1-3A_ME LINE L1 1975 2027 -831 3 1429 318 26 0 0 chr6 110726648 110726687 -38790350 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1429 723 278 92 68 chr6 110726974 110727344 -38789693 - MTE2b LTR MaLR 0 379 1 4 1429 300 374 100 0 chr6 110727489 110727679 -38789358 - MLT1F LTR MaLR -38 510 302 4 1429 1309 257 54 80 chr6 110727781 110728208 -38788829 - MTC LTR MaLR 0 421 6 4 1429 1481 48 0 0 chr6 110730434 110730621 -38786416 - L1_Mm LINE L1 -2993 2890 2704 4 1429 3658 36 5 0 chr6 110730621 110731059 -38785978 + L1Md_F3 LINE L1 6144 6583 -1 4 1429 202 257 0 39 chr6 110733509 110733586 -38783451 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 4 1429 218 81 0 26 chr6 110733632 110733670 -38783367 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1429 233 359 40 34 chr6 110733789 110733965 -38783072 - L4 LINE RTE -129 1900 1724 4 1429 565 295 25 69 chr6 110734175 110734335 -38782702 + B3A SINE B2 8 160 -38 4 1429 411 21 0 0 chr6 110734342 110734390 -38782647 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1429 519 246 130 108 chr6 110734421 110734690 -38782347 - MER31B LTR ERV1 -177 289 15 4 1429 468 0 0 0 chr6 110734822 110734874 -38782163 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1429 438 20 0 0 chr6 110734874 110734924 -38782113 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1429 370 369 77 48 chr6 110734940 110735148 -38781889 + B4 SINE B4 77 290 -2 4 1429 935 259 70 37 chr6 110736134 110736375 -38780662 + B4 SINE B4 4 260 -32 4 1429 357 24 0 0 chr6 110736375 110736417 -38780620 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1429 935 259 70 37 chr6 110736417 110736448 -38780589 + B4 SINE B4 261 285 -7 4 1429 510 301 51 46 chr6 110736645 110736840 -38780197 + B3A SINE B2 8 203 -13 4 1429 254 219 136 74 chr6 110736927 110737051 -38779986 + MER34A1 LTR ERV1 8 138 -449 4 1429 276 325 102 34 chr6 110737310 110737428 -38779609 + B3A SINE B2 5 130 -68 4 1429 647 75 0 11 chr6 110737443 110737538 -38779499 + (CA)n Simple_repeat Simple_repeat 1 94 0 4 1429 25 31 0 0 chr6 110737748 110737780 -38779257 + AT_rich Low_complexity Low_complexity 1 32 0 4 1429 1317 131 36 0 chr6 110738588 110738809 -38778228 + L1_Mus3 LINE L1 6403 6631 -7 4 1429 661 341 98 51 chr6 110739379 110739699 -38777338 - MLT1F1 LTR MaLR -3 566 224 4 1429 1011 95 7 7 chr6 110739699 110739847 -38777190 + B1_Mus1 SINE Alu 1 148 0 4 1429 661 341 98 51 chr6 110739847 110740017 -38777020 - MLT1F1 LTR MaLR -346 223 53 4 1429 9387 94 17 8 chr6 110740113 110741441 -38775596 - Lx3_Mus LINE L1 0 7009 5670 4 1429 360 0 0 0 chr6 110741679 110741719 -38775318 + (TAA)n Simple_repeat Simple_repeat 3 42 0 4 1429 862 246 65 10 chr6 110742717 110743009 -38774028 - L1MC1 LINE L1 -154 6179 5872 4 1429 317 261 177 0 chr6 110743174 110743304 -38773733 + MER5A1 DNA MER1_type 12 164 -2 4 1429 1731 130 67 19 chr6 110743855 110744168 -38772869 - ORR1A4 LTR MaLR -1 328 1 4 1429 882 255 143 21 chr6 110744184 110744520 -38772517 - MTE2b LTR MaLR -2 377 1 4 1429 486 305 80 83 chr6 110745202 110745527 -38771510 - MLT1B LTR MaLR -2 388 65 4 1429 954 192 30 64 chr6 110746214 110746448 -38770589 - URR1A DNA MER1_type 0 226 1 4 1429 506 305 66 70 chr6 110746909 110747166 -38769871 - MLT1D LTR MaLR -232 273 18 4 1429 732 227 24 12 chr6 110748973 110749145 -38767892 - L1_Mur2 LINE L1 -672 5568 5378 4 1429 413 69 44 44 chr6 110749306 110749397 -38767640 + (TCTCTG)n Simple_repeat Simple_repeat 6 96 0 4 1429 537 76 0 0 chr6 110749407 110749486 -38767551 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 1429 213 39 0 0 chr6 110749486 110749511 -38767526 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1429 1395 308 83 16 chr6 110749761 110750326 -38766711 - Lx9 LINE L1 -644 7000 6398 4 1429 353 70 0 17 chr6 110750352 110750410 -38766627 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 4 1429 238 304 25 0 chr6 110750559 110750638 -38766399 - RSINE1 SINE B4 -83 82 2 4 1429 609 249 94 31 chr6 110751279 110751470 -38765567 + Lx9 LINE L1 7052 7254 -390 4 1429 336 91 0 0 chr6 110752005 110752049 -38764988 - L1_Mus3 LINE L1 -717 5921 5878 4 1429 3703 123 9 77 chr6 110752049 110752708 -38764329 + L1_Mus3 LINE L1 6019 6632 -6 4 1429 654 214 0 0 chr6 110752763 110752908 -38764129 + GA-rich Low_complexity Low_complexity 4 148 0 4 1429 1411 0 5 19 chr6 110752909 110753120 -38763917 + (GGAA)n Simple_repeat Simple_repeat 1 208 0 4 1429 1617 186 58 0 chr6 110753121 110753481 -38763556 + Lx9 LINE L1 7262 7642 -2 4 1429 751 292 11 16 chr6 110753505 110753693 -38763344 - B3 SINE B2 -25 191 5 4 1429 228 238 0 0 chr6 110753703 110753766 -38763271 + (TATG)n Simple_repeat Simple_repeat 1 63 0 4 1429 819 322 57 18 chr6 110753977 110754071 -38762966 - Lx7 LINE L1 -375 7321 7225 4 1429 822 21 0 0 chr6 110754071 110754167 -38762870 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 4 1429 468 0 0 0 chr6 110754167 110754219 -38762818 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 4 1429 819 322 57 18 chr6 110754219 110754455 -38762582 - Lx7 LINE L1 -472 7224 6978 4 178 408 279 119 37 chr6 110755762 110755896 -38761141 + ID_B1 SINE B4 77 221 -3 4 1430 405 0 0 0 chr6 110756331 110756376 -38760661 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1430 226 403 0 32 chr6 110756383 110756506 -38760531 - PB1 SINE Alu -8 119 1 4 1430 228 345 59 25 chr6 110757245 110757364 -38759673 - MER5A DNA MER1_type -29 160 38 4 1430 275 357 54 8 chr6 110757759 110757893 -38759144 - MIR SINE MIR -103 165 20 4 1430 291 54 0 0 chr6 110758805 110758842 -38758195 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1430 1000 130 11 11 chr6 110758843 110759022 -38758015 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 4 1430 423 0 0 0 chr6 110759493 110759540 -38757497 + (TAG)n Simple_repeat Simple_repeat 1 47 0 4 1430 5506 143 80 13 chr6 110759541 110760531 -38756506 - Lx2 LINE L1 -88 6909 5853 4 1430 254 118 0 0 chr6 110760521 110760572 -38756465 + Lx2 LINE L1 6945 6995 -2 4 1430 488 299 113 39 chr6 110760583 110760606 -38756431 - RMER12 LTR ERVK -242 1330 1305 4 1430 387 0 0 0 chr6 110760606 110760649 -38756388 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1430 718 239 62 159 chr6 110760649 110761108 -38755929 - RMER12 LTR ERVK -268 1304 488 4 1430 306 50 0 0 chr6 110761109 110761149 -38755888 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 4 1430 195 49 23 47 chr6 110761765 110761808 -38755229 + (TATAA)n Simple_repeat Simple_repeat 3 44 0 4 1430 203 194 0 0 chr6 110761846 110761882 -38755155 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1430 494 287 14 22 chr6 110762128 110762267 -38754770 - B3A SINE B2 -60 138 1 4 1430 207 260 80 0 chr6 110762555 110762605 -38754432 + MER5A DNA MER1_type 29 82 -107 4 1430 189 373 0 13 chr6 110762712 110762788 -38754249 + MER5A DNA MER1_type 79 153 -36 4 1430 558 29 0 0 chr6 110762936 110763004 -38754033 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1430 730 353 49 30 chr6 110763731 110763997 -38753040 - B4A SINE B4 -21 271 1 4 1430 206 188 101 0 chr6 110764186 110764255 -38752782 + CT-rich Low_complexity Low_complexity 5 80 0 4 1430 210 67 0 0 chr6 110764258 110764276 -38752761 + (TG)n Simple_repeat Simple_repeat 2 19 0 4 1430 438 20 0 0 chr6 110764276 110764327 -38752710 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1430 210 67 0 0 chr6 110764327 110764338 -38752699 + (TG)n Simple_repeat Simple_repeat 1 11 0 4 1430 250 288 0 0 chr6 110764356 110764422 -38752615 - AluG_3 SINE Alu -92 219 154 4 1430 204 385 120 13 chr6 110764604 110764762 -38752275 - L3 LINE CR1 -911 3578 3404 4 1430 1779 138 24 63 chr6 110765476 110765808 -38751229 - Lx2 LINE L1 -3 6994 6676 4 1430 6735 155 11 1 chr6 110765809 110767495 -38749542 + Lx2 LINE L1 4964 6667 -330 4 1430 429 283 115 16 chr6 110767922 110768044 -38748993 + B1F SINE Alu 13 146 -3 4 1430 315 224 0 23 chr6 110768048 110768135 -38748902 + HAL1-2a_MD LINE L1 2347 2431 -593 4 1430 403 302 146 16 chr6 110768328 110768590 -38748447 - MTEa LTR MaLR -7 372 62 4 1430 747 341 42 46 chr6 110768597 110769052 -38747985 - Lx8 LINE L1 -270 7203 6751 4 1430 576 0 0 0 chr6 110769661 110769725 -38747312 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1430 426 153 56 45 chr6 110769728 110769906 -38747131 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 1430 500 315 12 0 chr6 110770026 110770188 -38746849 - RSINE1 SINE B4 0 165 2 4 1430 242 237 52 13 chr6 110770381 110770458 -38746579 - MTEa LTR MaLR -121 238 159 4 1430 2392 79 88 0 chr6 110770704 110771034 -38746003 + L1Md_F2 LINE L1 5989 6347 -235 4 1430 3409 70 22 4 chr6 110771034 110771490 -38745547 + L1Md_F2 LINE L1 6107 6570 -12 4 1430 446 286 74 57 chr6 110772312 110772542 -38744495 + RMER15 LTR ERVL 340 573 -2 4 1430 7470 81 2 2 chr6 110772924 110774025 -38743012 + L1_Mus2 LINE L1 5466 6566 0 4 1430 821 261 40 10 chr6 110774107 110774308 -38742729 + B3 SINE B2 1 207 -9 4 1430 657 288 105 33 chr6 110774336 110774699 -38742338 + Lx9 LINE L1 7254 7642 -2 4 1430 566 372 74 4 chr6 110775311 110775554 -38741483 - B4 SINE B4 -18 274 15 4 1430 21 0 0 0 chr6 110775584 110775605 -38741432 + AT_rich Low_complexity Low_complexity 1 21 0 4 1430 332 125 16 0 chr6 110775605 110775669 -38741368 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1430 454 316 80 0 chr6 110776108 110776333 -38740704 - L1M5 LINE L1 -350 5814 5572 4 1430 5394 89 12 5 chr6 110776336 110777092 -38739945 - L1_Mus4 LINE L1 0 6636 5876 4 1430 317 118 82 6 chr6 110777093 110777154 -38739883 + L1_Mus3 LINE L1 6296 6365 -217 4 1430 261 139 0 0 chr6 110777259 110777302 -38739735 + (A)n Simple_repeat Simple_repeat 1 43 0 4 1430 3000 66 5 5 chr6 110778521 110778917 -38738120 + MTA_Mm LTR MaLR 1 396 0 4 1430 237 374 0 0 chr6 110778973 110779056 -38737981 + Tigger5 DNA MER2_type 12 94 -2312 4 1430 408 20 0 0 chr6 110779062 110779111 -38737926 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1430 245 420 0 0 chr6 110779250 110779362 -38737675 + Tigger5 DNA MER2_type 127 238 -2168 4 1430 261 0 0 0 chr6 110779389 110779418 -38737619 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1430 2362 292 50 18 chr6 110780303 110781075 -38735962 - Lx9 LINE L1 -451 7193 6397 4 1430 273 146 0 0 chr6 110782760 110782808 -38734229 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1430 374 281 43 9 chr6 110782992 110783107 -38733930 + Tigger9a DNA Tigger 603 721 -11 5 1430 368 361 15 25 chr6 110783117 110783313 -38733724 - MLT1K LTR MaLR -14 581 388 5 1430 26 64 0 0 chr6 110783448 110783495 -38733542 + AT_rich Low_complexity Low_complexity 1 47 0 5 1430 606 311 70 51 chr6 110783498 110783911 -38733126 - Lx9 LINE L1 -33 7611 7191 5 1430 210 200 0 39 chr6 110784156 110784208 -38732829 + CT-rich Low_complexity Low_complexity 5 54 0 5 1430 719 287 50 82 chr6 110784238 110784618 -38732419 - MTEa LTR MaLR -9 370 3 5 1430 784 124 7 7 chr6 110785057 110785195 -38731842 + (GGA)n Simple_repeat Simple_repeat 2 139 0 5 1430 250 362 9 19 chr6 110786136 110786243 -38730794 + Charlie12 DNA MER1_type 2768 2873 0 5 1430 379 202 81 0 chr6 110787064 110787163 -38729874 - Lx9 LINE L1 -694 6950 6844 5 1430 915 230 44 10 chr6 110787818 110788024 -38729013 - B3 SINE B2 -2 214 2 5 1430 234 0 0 0 chr6 110788153 110788179 -38728858 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1430 6947 123 28 16 chr6 110788179 110789307 -38727730 - Lx3A LINE L1 -15 6966 5826 5 1430 256 411 21 5 chr6 110790309 110790495 -38726542 - MIR SINE MIR -26 236 48 5 1430 6921 36 0 12 chr6 110790587 110791426 -38725611 - L1Md_F3 LINE L1 -14 6570 5742 5 1430 674 277 18 55 chr6 110791436 110791654 -38725383 - B3 SINE B2 -6 210 1 5 1430 820 98 0 22 chr6 110792512 110792647 -38724390 + (GGAA)n Simple_repeat Simple_repeat 3 134 0 5 1430 1820 132 6 22 chr6 110793552 110793863 -38723174 - L1_Mus3 LINE L1 -2 6636 6331 5 1430 2464 77 0 6 chr6 110793863 110794190 -38722847 + L1_Mus3 LINE L1 5669 5993 -645 5 1430 1206 78 0 0 chr6 110794673 110794853 -38722184 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1430 309 68 0 0 chr6 110794860 110794904 -38722133 + (CAGAGA)n Simple_repeat Simple_repeat 4 47 0 5 1430 575 352 64 24 chr6 110794942 110795192 -38721845 - B4A SINE B4 -9 283 24 5 1430 394 317 7 48 chr6 110795179 110795325 -38721712 - B4 SINE B4 -40 252 113 5 1430 557 283 87 48 chr6 110795348 110795361 -38721676 - B3 SINE B2 0 216 208 5 1430 348 43 0 0 chr6 110795361 110795407 -38721630 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 1430 565 264 94 17 chr6 110795407 110795601 -38721436 - B3A SINE B2 -9 207 1 5 1430 22 0 0 0 chr6 110795640 110795662 -38721375 + AT_rich Low_complexity Low_complexity 1 22 0 5 1430 212 279 46 92 chr6 110795739 110795826 -38721211 - B4A SINE B4 -200 92 10 5 1430 33006 41 1 1 chr6 110795986 110800749 -38716288 - L1Md_F2 LINE L1 -3 6579 1817 5 1430 215 224 176 0 chr6 110801275 110801360 -38715677 + MIRc SINE MIR 102 201 -67 5 1430 538 350 5 10 chr6 110801951 110802150 -38714887 + B3A SINE B2 1 198 0 5 1430 294 179 0 0 chr6 110802398 110802454 -38714583 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1430 3085 32 3 0 chr6 110802454 110802823 -38714214 - L1Md_T LINE L1 -2 6580 6211 5 1430 237 352 123 57 chr6 110803667 110803911 -38713126 - L2 LINE L2 -484 2935 2676 5 1430 553 262 99 12 chr6 110805137 110805299 -38711738 + RMER30 DNA MER1_type 2 177 -25 5 1430 21 0 0 0 chr6 110806340 110806361 -38710676 + AT_rich Low_complexity Low_complexity 1 21 0 5 1430 318 195 63 25 chr6 110806930 110807009 -38710028 - Lx3C LINE L1 -699 6277 6196 5 1430 228 276 33 54 chr6 110807009 110807101 -38709936 + ORR1D1 LTR MaLR 52 141 -233 5 1430 180 0 0 0 chr6 110807249 110807269 -38709768 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1430 882 67 58 26 chr6 110807581 110807735 -38709302 - L1Md_F3 LINE L1 -2 6582 6424 5 1430 428 326 22 22 chr6 110808095 110808233 -38708804 + RSINE1 SINE B4 11 148 -17 5 1430 513 0 0 0 chr6 110808271 110808328 -38708709 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1430 23 0 0 0 chr6 110809086 110809109 -38707928 + AT_rich Low_complexity Low_complexity 1 23 0 5 1430 432 236 0 0 chr6 110809323 110809433 -38707604 + (CA)n Simple_repeat Simple_repeat 1 110 0 5 1430 210 167 0 0 chr6 110809433 110809469 -38707568 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 1430 279 286 68 16 chr6 110811774 110811885 -38705152 + MIR SINE MIR 54 164 -44 5 1430 402 261 0 105 chr6 110812081 110812104 -38704933 + MT2B LTR ERVL 147 156 -445 5 1430 785 167 24 0 chr6 110812104 110812230 -38704807 + B1_Mus2 SINE Alu 2 130 -17 5 1430 246 281 74 116 chr6 110812661 110812850 -38704187 - Lx5 LINE L1 0 7050 6870 5 1430 1053 97 14 0 chr6 110812908 110813053 -38703984 + B1_Mm SINE Alu 1 147 0 5 1430 797 73 0 31 chr6 110813066 110813193 -38703844 + (GAAAA)n Simple_repeat Simple_repeat 2 124 0 5 1430 1151 159 17 17 chr6 110813201 110813424 -38703613 + Lx LINE L1 6419 6642 -12 5 1430 985 98 28 0 chr6 110813424 110813567 -38703470 + B1_Mus1 SINE Alu 2 148 0 5 1430 1151 159 17 17 chr6 110813567 110813579 -38703458 + Lx LINE L1 6643 6654 0 5 1430 24 85 0 0 chr6 110813809 110813868 -38703169 + AT_rich Low_complexity Low_complexity 1 59 0 5 1430 183 301 96 0 chr6 110814026 110814099 -38702938 - L2c LINE L2 -81 3306 3227 5 1430 683 350 25 11 chr6 110814164 110814522 -38702515 + Lx9 LINE L1 7061 7423 -221 5 1430 2542 241 116 60 chr6 110814522 110815429 -38701608 - RMER17B LTR ERVK 0 958 1 5 1430 228 382 51 34 chr6 110815690 110815866 -38701171 + MIRb SINE MIR 71 249 -19 5 1430 289 264 53 32 chr6 110816864 110816958 -38700079 + PB1D7 SINE Alu 20 115 -5 5 1430 189 0 0 0 chr6 110816958 110816979 -38700058 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1430 831 284 100 55 chr6 110817152 110817513 -38699524 + MTE2b LTR MaLR 3 379 0 5 1430 391 159 16 8 chr6 110817879 110818006 -38699031 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 5 1430 232 347 64 58 chr6 110818323 110818479 -38698558 + ORR1E LTR MaLR 80 236 -123 5 1430 210 174 0 0 chr6 110818688 110818734 -38698303 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1430 336 318 64 35 chr6 110819874 110820093 -38696944 - L1MCa LINE L1 -4785 1632 1311 5 1430 21 36 0 0 chr6 110820537 110820565 -38696472 + AT_rich Low_complexity Low_complexity 1 28 0 5 1430 396 0 0 0 chr6 110820636 110820680 -38696357 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1430 330 296 97 34 chr6 110820834 110820980 -38696057 + MLT1A LTR MaLR 3 148 -319 5 1430 277 326 84 100 chr6 110821200 110821780 -38695257 + L1M2 LINE L1 4828 5398 -745 5 1430 268 254 161 16 chr6 110822077 110822201 -38694836 - L1M2 LINE L1 -1174 4969 4828 5 1430 24 32 0 0 chr6 110822289 110822320 -38694717 + AT_rich Low_complexity Low_complexity 1 31 0 5 1430 608 218 40 8 chr6 110823538 110823663 -38693374 + RSINE1 SINE B4 4 132 -33 5 1430 1123 95 0 0 chr6 110823783 110823931 -38693106 + B1_Mus1 SINE Alu 1 148 0 5 1430 281 306 134 0 chr6 110824536 110824670 -38692367 - MLT1A1 LTR MaLR -12 396 245 5 1430 4370 177 10 8 chr6 110829280 110830070 -38686967 - Lx2 LINE L1 -2 6995 6204 5 1430 3185 83 2 5 chr6 110830297 110830743 -38686294 - L1_Mur1 LINE L1 -615 5271 4827 5 1430 1264 140 70 0 chr6 110830743 110830972 -38686065 + Lx3_Mus LINE L1 6757 7001 -8 5 1430 349 223 65 24 chr6 110831734 110831858 -38685179 - Lx2B LINE L1 -10 6990 6862 5 1430 1048 64 43 0 chr6 110831873 110832014 -38685023 - B1_Mus2 SINE Alu 0 147 1 5 1430 24 0 0 0 chr6 110833335 110833359 -38683678 + AT_rich Low_complexity Low_complexity 1 24 0 5 1430 523 302 136 24 chr6 110833576 110833827 -38683210 + B4 SINE B4 1 279 -13 5 1430 459 0 0 0 chr6 110834604 110834655 -38682382 + (TAG)n Simple_repeat Simple_repeat 3 53 0 5 1430 1641 97 0 30 chr6 110834657 110834922 -38682115 - Lx3A LINE L1 -15 6966 6710 5 1430 770 220 71 25 chr6 110835270 110835466 -38681571 - B3 SINE B2 -11 205 1 5 1430 828 335 32 45 chr6 110837300 110837355 -38679682 + MTEb LTR MaLR 1 44 -335 5 1430 603 265 116 0 chr6 110837355 110837536 -38679501 - B3 SINE B2 -14 202 1 5 1430 866 326 38 4 chr6 110837536 110837855 -38679182 + MTEb LTR MaLR 45 370 -9 5 1430 334 243 103 56 chr6 110838241 110838387 -38678650 + L1M5 LINE L1 5671 5822 -356 5 1430 668 324 9 0 chr6 110838717 110838930 -38678107 - B3 SINE B2 0 216 2 5 1430 215 185 30 15 chr6 110838930 110838975 -38678062 + T-rich Low_complexity Low_complexity 17 63 0 5 1430 1085 62 7 33 chr6 110838975 110839126 -38677911 - B1_Mm SINE Alu 0 147 1 5 1430 215 185 30 15 chr6 110839126 110839140 -38677897 + T-rich Low_complexity Low_complexity 3 16 0 5 1430 373 255 34 0 chr6 110839243 110839392 -38677645 + Lx9 LINE L1 7489 7642 -2 5 1430 378 286 0 0 chr6 110839397 110839474 -38677563 + B4A SINE B4 212 288 -4 5 1430 344 108 62 9 chr6 110839967 110840079 -38676958 + T-rich Low_complexity Low_complexity 3 120 0 5 1430 322 219 46 161 chr6 110840710 110840770 -38676267 - B2_Mm2 SINE B2 -1 194 134 5 1430 555 96 0 0 chr6 110840770 110840853 -38676184 + (TG)n Simple_repeat Simple_repeat 2 84 0 5 1430 452 219 46 161 chr6 110840853 110841010 -38676027 - B3A SINE B2 -51 147 2 5 1430 310 382 62 20 chr6 110841286 110841481 -38675556 + B4A SINE B4 8 210 -82 5 1430 414 39 0 0 chr6 110843547 110843599 -38673438 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1430 1358 238 20 31 chr6 110843643 110843995 -38673042 - Lx9 LINE L1 -666 6978 6631 5 1430 324 336 58 0 chr6 110844632 110844736 -38672301 - B3A SINE B2 -83 115 6 5 1430 232 118 0 38 chr6 110844877 110844930 -38672107 - L1_Mus1 LINE L1 -1 6566 6516 5 1430 230 312 57 34 chr6 110845556 110845732 -38671305 - Lx8 LINE L1 -17 7456 7277 5 1430 7227 88 24 10 chr6 110846319 110847352 -38669685 - L1_Mus4 LINE L1 0 6636 5589 5 1430 627 14 0 0 chr6 110847977 110848049 -38668988 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1430 566 194 71 114 chr6 110852250 110852387 -38664650 - RMER12 LTR ERVK -103 1219 1084 6 1430 2802 86 2 34 chr6 110852387 110852796 -38664241 + MTA_Mm LTR MaLR 1 396 0 6 1430 566 194 71 114 chr6 110852796 110852868 -38664169 - RMER12 LTR ERVK -239 1083 1019 6 1430 206 234 0 0 chr6 110852911 110852958 -38664079 + GA-rich Low_complexity Low_complexity 3 49 0 6 1430 303 271 142 99 chr6 110852963 110853285 -38663752 - RMER12 LTR ERVK -1000 808 556 6 1430 1392 259 48 60 chr6 110853280 110853908 -38663129 - RMER12 LTR ERVK -596 808 1 6 1430 280 0 50 0 chr6 110854506 110854546 -38662491 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1430 348 319 88 47 chr6 110854791 110854962 -38662075 + B3 SINE B2 5 182 -34 6 1430 3712 174 6 22 chr6 110855043 110855694 -38661343 - L1_Mur2 LINE L1 -492 5385 4732 6 1430 210 37 0 0 chr6 110855694 110855721 -38661316 + (TTG)n Simple_repeat Simple_repeat 2 28 0 6 1430 3712 174 6 22 chr6 110855721 110855793 -38661244 - L1_Mur2 LINE L1 -1146 4731 4674 6 1430 1707 139 4 0 chr6 110855765 110856023 -38661014 + L1_Mm LINE L1 5402 5660 -223 6 1430 604 215 101 11 chr6 110856021 110856200 -38660837 + L1_Mus4 LINE L1 6442 6636 0 6 1430 339 25 0 0 chr6 110856244 110856284 -38660753 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1430 498 337 35 35 chr6 110856291 110856491 -38660546 + B3A SINE B2 2 201 -15 6 1430 2022 325 89 49 chr6 110856855 110857905 -38659132 - Lx8 LINE L1 -83 7390 6294 6 1430 1294 218 51 99 chr6 110857905 110857978 -38659059 - ORR1D1 LTR MaLR 0 374 328 6 1430 357 62 0 0 chr6 110857978 110858026 -38659011 + (CAA)n Simple_repeat Simple_repeat 2 49 0 6 1430 1294 218 51 99 chr6 110858026 110858345 -38658692 - ORR1D1 LTR MaLR -47 327 1 6 1430 2022 325 89 49 chr6 110858345 110858442 -38658595 - Lx8 LINE L1 -1180 6293 6197 6 1430 22 80 0 0 chr6 110858449 110858499 -38658538 + AT_rich Low_complexity Low_complexity 1 50 0 6 1430 367 322 19 45 chr6 110858833 110858989 -38658048 + RSINE1 SINE B4 3 154 -11 6 1430 375 23 0 0 chr6 110859333 110859377 -38657660 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1430 579 40 0 0 chr6 110859377 110859450 -38657587 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1430 583 307 20 35 chr6 110861327 110861526 -38655511 - ORR1E LTR MaLR -163 196 1 6 1430 998 180 134 0 chr6 110862817 110863011 -38654026 - URR1A DNA MER1_type 0 226 7 6 1430 5570 79 0 8 chr6 110863347 110864101 -38652936 - L1Md_F2 LINE L1 0 6582 5835 6 1430 241 24 48 24 chr6 110864572 110864614 -38652423 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1430 237 65 0 0 chr6 110864988 110865019 -38652018 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1430 3950 218 62 11 chr6 110865071 110865973 -38651064 - Lx5 LINE L1 -177 6873 5926 6 1430 1948 157 3 70 chr6 110865986 110866371 -38650666 + Lx5 LINE L1 5587 5945 -1105 6 1430 459 328 53 0 chr6 110866672 110866803 -38650234 - ID_B1 SINE B4 -14 210 73 6 1430 1112 237 55 44 chr6 110867043 110867409 -38649628 - Lx2B LINE L1 -5 6995 6626 6 1430 316 151 151 0 chr6 110867399 110867472 -38649565 + Lx2B LINE L1 6282 6365 -635 6 1430 953 161 13 6 chr6 110867468 110867624 -38649413 + Lx3C LINE L1 6470 6626 -350 6 1430 22 0 0 0 chr6 110867628 110867650 -38649387 + AT_rich Low_complexity Low_complexity 1 22 0 6 1430 183 42 0 0 chr6 110867852 110867876 -38649161 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1430 531 74 0 0 chr6 110869068 110869149 -38647888 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1430 394 341 56 45 chr6 110869150 110869328 -38647709 - B4A SINE B4 -4 288 109 6 1430 214 171 24 0 chr6 110869822 110869863 -38647174 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1430 446 0 19 0 chr6 110870154 110870208 -38646829 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1430 617 211 0 16 chr6 110870251 110870376 -38646661 - B3 SINE B2 -2 214 92 6 1430 593 76 11 0 chr6 110871040 110871132 -38645905 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1430 501 293 98 40 chr6 110871132 110871356 -38645681 - B4 SINE B4 -49 243 7 6 1430 423 275 129 8 chr6 110871769 110871901 -38645136 - B1_Mur1 SINE Alu 0 149 2 6 1430 364 286 0 12 chr6 110872132 110872217 -38644820 - B4A SINE B4 -206 86 3 6 1430 227 326 32 70 chr6 110872628 110872786 -38644251 + MLT1N2 LTR MaLR 391 542 -20 6 1430 27 62 0 0 chr6 110872990 110873038 -38643999 + AT_rich Low_complexity Low_complexity 1 48 0 6 1430 432 55 0 0 chr6 110873049 110873104 -38643933 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1430 401 310 76 23 chr6 110873107 110873239 -38643798 - RSINE1 SINE B4 -15 150 12 6 1430 3312 84 2 4 chr6 110873428 110873883 -38643154 - L1_Mus2 LINE L1 -1 6565 6112 6 1430 234 91 0 0 chr6 110875698 110875731 -38641306 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 1430 235 389 33 11 chr6 110876290 110876381 -38640656 + ID_B1 SINE B4 9 101 -123 6 1430 21 0 0 0 chr6 110876533 110876554 -38640483 + AT_rich Low_complexity Low_complexity 1 21 0 6 1430 342 221 57 9 chr6 110876575 110876680 -38640357 - Lx7 LINE L1 0 7696 7587 6 1430 533 341 48 25 chr6 110876752 110877068 -38639969 - Lx8 LINE L1 0 7473 7151 6 1430 506 295 130 17 chr6 110877489 110877727 -38639310 - Lx8 LINE L1 -314 7159 6895 6 1430 231 323 0 0 chr6 110877862 110877924 -38639113 - ID4_ SINE ID -20 63 2 6 1430 25 0 0 0 chr6 110878638 110878663 -38638374 + AT_rich Low_complexity Low_complexity 1 25 0 6 1430 377 352 137 69 chr6 110878699 110878961 -38638076 - B4 SINE B4 -11 281 2 6 1430 4298 109 116 16 chr6 110879863 110880563 -38636474 - Lx3_Mus LINE L1 0 7009 6240 6 1430 1811 122 9 13 chr6 110880567 110880882 -38636155 + Lx3_Mus LINE L1 5923 6236 -773 6 1430 21 0 0 0 chr6 110880942 110880963 -38636074 + AT_rich Low_complexity Low_complexity 1 21 0 6 1430 222 37 0 0 chr6 110881399 110881426 -38635611 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1430 359 194 32 0 chr6 110881426 110881550 -38635487 - Lx6 LINE L1 -5 7455 7328 6 1430 387 202 26 0 chr6 110881550 110881664 -38635373 + CT-rich Low_complexity Low_complexity 2 118 0 6 1430 22 0 0 0 chr6 110881787 110881809 -38635228 + AT_rich Low_complexity Low_complexity 1 22 0 6 1430 303 367 56 21 chr6 110882252 110882394 -38634643 + B1F SINE Alu 3 149 0 6 1430 207 0 0 0 chr6 110882458 110882481 -38634556 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 6 1430 221 382 50 25 chr6 110883372 110883533 -38633504 - L2 LINE L2 -968 2451 2287 6 1430 232 304 169 11 chr6 110883621 110883804 -38633233 - L2 LINE L2 -1293 2126 1915 6 1430 502 273 55 55 chr6 110883991 110884173 -38632864 - B3A SINE B2 -16 182 1 6 1431 1140 233 31 74 chr6 110887521 110887845 -38629192 - ORR1D1 LTR MaLR -3 371 62 6 1431 818 321 103 23 chr6 110888176 110888524 -38628513 - MTEa LTR MaLR -3 376 1 6 1431 578 266 52 21 chr6 110889731 110889923 -38627114 + Lx6 LINE L1 6064 6261 -1199 6 1431 395 125 14 0 chr6 110890445 110890517 -38626520 + (TC)n Simple_repeat Simple_repeat 1 73 0 6 1431 1011 283 32 60 chr6 110890527 110890905 -38626132 - Lx5 LINE L1 0 7050 6751 6 1431 1576 45 35 0 chr6 110890905 110891104 -38625933 - L1Md_T LINE L1 -5 6577 6372 6 1431 956 283 25 175 chr6 110891104 110891336 -38625701 - Lx5 LINE L1 -291 6767 6521 6 1431 884 297 28 56 chr6 110892633 110893025 -38624012 - RMER5 LTR ERV1 -11 523 143 6 1431 352 358 25 15 chr6 110894337 110894533 -38622504 + B3A SINE B2 1 198 0 6 1431 22 0 0 0 chr6 110894875 110894897 -38622140 + AT_rich Low_complexity Low_complexity 1 22 0 6 1431 1098 44 7 0 chr6 110895033 110895168 -38621869 + B1_Mus1 SINE Alu 3 138 -10 6 1431 188 34 0 33 chr6 110895168 110895198 -38621839 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1431 4650 26 0 0 chr6 110895252 110895791 -38621246 + L1Md_A LINE L1 6044 6582 0 6 1431 420 274 28 99 chr6 110895873 110896084 -38620953 - B3A SINE B2 0 198 3 6 1431 26 0 0 0 chr6 110896271 110896297 -38620740 + AT_rich Low_complexity Low_complexity 1 26 0 6 1431 675 239 65 91 chr6 110897112 110897390 -38619647 - RLTR12B LTR ERVK -244 324 42 6 1431 21 0 0 0 chr6 110897893 110897914 -38619123 + AT_rich Low_complexity Low_complexity 1 21 0 6 1431 434 240 19 0 chr6 110898167 110898271 -38618766 - Lx5 LINE L1 -200 6850 6745 6 1431 652 344 155 8 chr6 110898902 110899263 -38617774 - MTC LTR MaLR -2 419 6 6 1431 24 67 0 0 chr6 110899847 110899892 -38617145 + AT_rich Low_complexity Low_complexity 1 45 0 6 1431 363 218 19 29 chr6 110900706 110900810 -38616227 + MTEb LTR MaLR 275 377 -2 6 1431 3100 64 66 0 chr6 110900964 110901373 -38615664 - RLTR10C LTR ERVK 0 436 1 6 1431 437 291 0 9 chr6 110901967 110902078 -38614959 + PB1D9 SINE Alu 3 112 -8 6 1431 333 0 0 0 chr6 110902088 110902125 -38614912 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1431 21 0 0 0 chr6 110902144 110902165 -38614872 + AT_rich Low_complexity Low_complexity 1 21 0 6 1431 363 96 0 0 chr6 110902174 110902226 -38614811 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1431 2895 61 0 75 chr6 110902320 110902744 -38614293 - L1_Mus2 LINE L1 0 6566 6175 6 1431 21 0 0 0 chr6 110902844 110902865 -38614172 + AT_rich Low_complexity Low_complexity 1 21 0 6 1431 589 263 51 6 chr6 110902924 110903081 -38613956 - B3 SINE B2 0 216 53 6 1431 564 297 135 17 chr6 110903385 110903673 -38613364 - Lx8 LINE L1 -2 7471 7150 6 1431 218 386 62 8 chr6 110904255 110904383 -38612654 + MER5A DNA MER1_type 2 136 -53 6 1431 351 0 0 0 chr6 110904760 110904799 -38612238 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1431 333 346 97 102 chr6 110904871 110905067 -38611970 - B4A SINE B4 -97 195 1 6 1431 620 281 48 33 chr6 110905098 110905308 -38611729 - B3A SINE B2 -1 215 3 6 1431 182 371 0 0 chr6 110905597 110905659 -38611378 + L4 LINE RTE 1654 1715 -314 6 1431 399 168 78 10 chr6 110905819 110905921 -38611116 - Lx2A LINE L1 -4 7004 6896 6 1431 309 321 96 30 chr6 110906285 110906452 -38610585 - Tigger7 DNA MER2_type -1 2490 2313 6 1431 652 249 46 20 chr6 110906605 110906802 -38610235 - MTE2b LTR MaLR -6 373 172 7 1431 437 257 30 0 chr6 110906880 110906981 -38610056 - B4A SINE B4 -16 276 173 7 1431 618 183 0 0 chr6 110907001 110907121 -38609916 + CT-rich Low_complexity Low_complexity 1 120 0 7 1431 1578 11 0 0 chr6 110907121 110907301 -38609736 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1431 437 327 38 19 chr6 110907310 110907469 -38609568 - B4A SINE B4 -127 165 4 7 1431 393 385 5 32 chr6 110907469 110907652 -38609385 - MTE2b LTR MaLR -201 178 1 7 1431 341 346 58 14 chr6 110907657 110907795 -38609242 - Tigger7 DNA MER2_type -2271 220 77 6 1431 615 342 18 18 chr6 110908323 110908549 -38608488 + B4A SINE B4 2 227 -65 7 1431 531 333 0 0 chr6 110908554 110908710 -38608327 + RSINE1 SINE B4 4 159 -6 7 1431 24 0 0 0 chr6 110908952 110908976 -38608061 + AT_rich Low_complexity Low_complexity 1 24 0 7 1431 530 261 46 0 chr6 110909835 110909965 -38607072 - B1F SINE Alu -1 148 13 7 1431 396 59 0 0 chr6 110909980 110910031 -38607006 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1431 496 311 57 46 chr6 110910038 110910321 -38606716 - B4A SINE B4 -4 288 3 7 1431 227 367 17 68 chr6 110911875 110911902 -38605135 - ID_B1 SINE B4 -26 198 177 7 1431 315 0 0 0 chr6 110911902 110911937 -38605100 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1431 227 367 17 68 chr6 110911937 110912026 -38605011 - ID_B1 SINE B4 -48 176 88 7 1431 26 0 0 0 chr6 110912539 110912565 -38604472 + AT_rich Low_complexity Low_complexity 1 26 0 7 1431 634 279 106 24 chr6 110912951 110913198 -38603839 - ORR1D2 LTR MaLR -4 366 115 7 1431 403 303 62 27 chr6 110913419 110913565 -38603472 + MER20 DNA MER1_type 12 162 -57 7 1431 236 329 172 31 chr6 110913968 110914131 -38602906 - MER5A DNA MER1_type -1 188 3 7 1431 497 314 37 42 chr6 110914964 110915180 -38601857 + B3 SINE B2 2 216 0 7 1431 414 0 0 0 chr6 110915272 110915318 -38601719 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 7 1431 265 229 14 14 chr6 110915961 110916032 -38601005 + T-rich Low_complexity Low_complexity 3 73 0 7 1431 416 317 107 24 chr6 110918618 110918786 -38598251 + B3A SINE B2 1 182 -16 7 1431 6814 222 48 29 chr6 110918975 110921958 -38595079 + Lx6 LINE L1 4403 7458 -2 7 1431 417 39 0 0 chr6 110922098 110922149 -38594888 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1431 207 0 0 0 chr6 110922680 110922703 -38594334 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1431 236 338 39 52 chr6 110922703 110922856 -38594181 - MER5B DNA MER1_type -12 166 16 7 1431 863 303 53 22 chr6 110923193 110923551 -38593486 + MTEb LTR MaLR 5 373 -6 7 1431 354 23 0 0 chr6 110923916 110923959 -38593078 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1431 674 292 42 36 chr6 110925372 110925564 -38591473 + B3A SINE B2 2 194 -4 7 1431 340 323 0 0 chr6 110925617 110925710 -38591327 + PB1 SINE Alu 32 124 -3 7 1431 267 114 0 0 chr6 110925977 110926021 -38591016 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1431 189 0 0 0 chr6 110926022 110926043 -38590994 + (TC)n Simple_repeat Simple_repeat 2 22 0 7 1431 564 309 94 4 chr6 110926054 110926320 -38590717 - B4 SINE B4 0 292 3 7 1431 483 18 0 0 chr6 110927120 110927176 -38589861 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1431 182 362 42 33 chr6 110927328 110927448 -38589589 + MER5A DNA MER1_type 66 186 -3 7 1431 181 253 78 26 chr6 110927663 110927740 -38589297 - L4 LINE RTE -262 1767 1687 7 1431 431 322 57 52 chr6 110928018 110928211 -38588826 - B3A SINE B2 -3 195 2 7 1431 444 19 0 0 chr6 110930147 110930200 -38586837 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1431 3091 68 0 10 chr6 110931306 110931710 -38585327 - MTB LTR MaLR 0 400 1 7 1431 274 314 37 19 chr6 110932743 110932850 -38584187 - Lx9 LINE L1 -402 7242 7134 7 1431 241 353 87 29 chr6 110933070 110933253 -38583784 + Lx8 LINE L1 7139 7331 -142 7 1431 207 69 0 0 chr6 110933253 110933282 -38583755 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1431 241 353 87 29 chr6 110933282 110933407 -38583630 + Lx8 LINE L1 7332 7464 -9 7 1431 1086 89 0 20 chr6 110933563 110933712 -38583325 - B1_Mus1 SINE Alu 0 148 3 7 1431 46 45 0 0 chr6 110934778 110934845 -38582192 + AT_rich Low_complexity Low_complexity 1 67 0 7 1431 21 36 0 0 chr6 110935387 110935415 -38581622 + AT_rich Low_complexity Low_complexity 1 28 0 7 1431 1147 203 18 0 chr6 110936032 110936254 -38580783 + URR1A DNA MER1_type 1 226 0 7 1431 282 257 102 57 chr6 110936744 110936901 -38580136 + L1MC3 LINE L1 6512 6675 -1110 7 1431 1050 65 29 0 chr6 110937052 110937191 -38579846 + B1_Mus2 SINE Alu 5 147 0 7 1431 291 175 35 0 chr6 110937288 110937345 -38579692 + Lx9 LINE L1 7377 7435 -209 7 1431 2856 62 0 0 chr6 110937343 110937699 -38579338 + L1_Mm LINE L1 5240 5595 -288 7 1431 2813 38 3 0 chr6 110937700 110938043 -38578994 + L1Md_F3 LINE L1 6238 6581 -3 7 1431 887 240 138 12 chr6 110938123 110938448 -38578589 + Lx9 LINE L1 7238 7603 -41 7 1431 854 215 103 55 chr6 110939140 110939367 -38577670 - Lx7 LINE L1 -1 7695 7453 7 1431 435 19 0 0 chr6 110939367 110939419 -38577618 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1431 854 215 103 55 chr6 110939419 110939462 -38577575 - Lx7 LINE L1 -244 7452 7412 7 1431 580 320 40 28 chr6 110939579 110939756 -38577281 - B4A SINE B4 -71 221 43 7 1431 21 57 0 0 chr6 110941295 110941330 -38575707 + AT_rich Low_complexity Low_complexity 1 35 0 7 1431 426 53 0 0 chr6 110941702 110941759 -38575278 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1431 477 0 0 0 chr6 110941759 110941811 -38575226 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1431 423 38 0 0 chr6 110943081 110943134 -38573903 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1431 238 275 51 76 chr6 110943399 110943517 -38573520 - MLT1A1 LTR MaLR 0 408 294 7 1431 21 0 0 0 chr6 110943653 110943674 -38573363 + AT_rich Low_complexity Low_complexity 1 21 0 7 1431 22 56 0 0 chr6 110943884 110943920 -38573117 + AT_rich Low_complexity Low_complexity 1 36 0 7 1431 255 61 0 0 chr6 110943920 110943953 -38573084 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1431 290 197 26 0 chr6 110944015 110944091 -38572946 + (TATG)n Simple_repeat Simple_repeat 2 79 0 7 1431 209 355 87 32 chr6 110944286 110944504 -38572533 - MIR SINE MIR -1 261 32 7 1431 513 0 0 0 chr6 110946895 110946952 -38570085 + (TC)n Simple_repeat Simple_repeat 1 57 0 7 1431 315 0 0 0 chr6 110946953 110946988 -38570049 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1431 293 284 0 0 chr6 110947438 110947526 -38569511 + T-rich Low_complexity Low_complexity 1 88 0 7 1431 2204 129 3 9 chr6 110947530 110947874 -38569163 - Lx3A LINE L1 -6 6975 6634 7 1431 2479 123 80 0 chr6 110947874 110948288 -38568749 + Lx3B LINE L1 6170 6616 -357 7 1431 549 0 0 0 chr6 110948565 110948626 -38568411 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1431 241 259 0 23 chr6 110949065 110949152 -38567885 + (CAT)n Simple_repeat Simple_repeat 3 87 0 7 1431 347 297 45 0 chr6 110949379 110949490 -38567547 + ID_B1 SINE B4 109 224 0 7 1431 1713 221 8 16 chr6 110949960 110950279 -38566758 + ORR1D1 LTR MaLR 1 318 -56 7 1431 1037 55 0 20 chr6 110950279 110950426 -38566611 + L1Md_F2 LINE L1 6439 6582 0 7 1431 1713 221 8 16 chr6 110950426 110950483 -38566554 + ORR1D1 LTR MaLR 319 374 0 7 1431 280 250 0 140 chr6 110950767 110950874 -38566163 + MTD LTR MaLR 1 92 -287 7 1431 1113 159 129 19 chr6 110950893 110951149 -38565888 - Lx4B LINE L1 -4 7054 6771 7 1431 699 210 194 22 chr6 110951282 110951462 -38565575 - B3 SINE B2 -4 212 2 7 1431 619 231 17 0 chr6 110951623 110951740 -38565297 + B2_Mm2 SINE B2 1 119 -76 7 1431 738 43 0 0 chr6 110951947 110952041 -38564996 + (CA)n Simple_repeat Simple_repeat 2 95 0 7 1431 460 307 12 44 chr6 110952125 110952285 -38564752 + MTD LTR MaLR 265 419 0 7 1431 455 303 105 34 chr6 110952455 110952694 -38564343 - LTR87 LTR ERVL? -367 257 2 7 1431 396 313 70 39 chr6 110952707 110953019 -38564018 + L1MC LINE L1 4564 4885 -1261 7 1431 351 0 0 0 chr6 110953782 110953821 -38563216 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1431 365 304 0 0 chr6 110953829 110953908 -38563129 - RSINE1 SINE B4 -31 134 56 7 1431 206 125 21 0 chr6 110953911 110953959 -38563078 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 7 1431 303 28 0 0 chr6 110953968 110954004 -38563033 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 7 1431 6278 103 60 5 chr6 110954017 110955079 -38561958 - Lx LINE L1 -7 6647 5528 7 1431 2746 62 14 0 chr6 110955079 110955448 -38561589 + RLTR10 LTR ERVK 1 374 -16 7 1431 538 106 0 12 chr6 110955449 110955535 -38561502 - Lx LINE L1 -350 5533 5449 7 1431 930 145 179 0 chr6 110955538 110955745 -38561292 + L1_Mur2 LINE L1 5044 5287 -590 7 1431 203 0 0 36 chr6 110955996 110956024 -38561013 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1431 936 135 0 0 chr6 110956494 110956642 -38560395 + L1_Mm LINE L1 5295 5442 -441 7 1431 245 228 86 17 chr6 110956644 110956702 -38560335 - B4A SINE B4 -229 63 2 7 1431 522 0 0 0 chr6 110957680 110957738 -38559299 + (TA)n Simple_repeat Simple_repeat 2 59 0 7 1431 1005 295 12 22 chr6 110958562 110958884 -38558153 + Lx6 LINE L1 7127 7445 -15 7 1431 312 102 0 0 chr6 110960201 110960250 -38556787 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 7 1431 377 278 11 0 chr6 110960523 110960613 -38556424 + B3A SINE B2 8 98 -100 7 1431 358 303 44 38 chr6 110960842 110961000 -38556037 + MER45A DNA Tip100 9 167 -11 7 1431 963 50 0 0 chr6 110961145 110961266 -38555771 + (TC)n Simple_repeat Simple_repeat 1 121 0 7 1431 1082 74 23 0 chr6 110961278 110961453 -38555584 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 7 1431 509 314 57 82 chr6 110961465 110961854 -38555183 - MLT1A LTR MaLR 0 408 1 7 1431 33889 35 0 0 chr6 110963537 110968771 -38548266 + L1Md_T LINE L1 259 5589 -297 7 1431 8915 11 0 0 chr6 110968771 110969767 -38547270 + L1Md_T LINE L1 5590 6585 0 7 1431 42 20 0 0 chr6 110969831 110969880 -38547157 + AT_rich Low_complexity Low_complexity 1 49 0 7 1431 490 312 8 6 chr6 110971297 110971441 -38545596 + B3A SINE B2 1 140 -55 8 1431 611 13 13 0 chr6 110971445 110971521 -38545516 + (CA)n Simple_repeat Simple_repeat 2 78 0 8 1431 463 377 10 30 chr6 110972550 110972848 -38544189 + B4 SINE B4 1 292 0 8 1431 215 311 0 0 chr6 110972867 110972928 -38544109 + (CATA)n Simple_repeat Simple_repeat 2 62 0 8 1431 1161 105 35 6 chr6 110974437 110974609 -38542428 + B2_Mm2 SINE B2 1 177 -18 8 1431 222 37 0 0 chr6 110974934 110974961 -38542076 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1431 657 0 0 0 chr6 110975727 110975800 -38541237 + (TTTC)n Simple_repeat Simple_repeat 3 75 0 8 1431 825 172 7 7 chr6 110975815 110975961 -38541076 - B1_Mus1 SINE Alu -1 147 2 8 1431 568 286 38 31 chr6 110976104 110976263 -38540774 + B3A SINE B2 24 183 -15 8 1431 666 220 0 41 chr6 110976300 110976447 -38540590 + B1_Mus1 SINE Alu 1 141 -7 8 1431 383 303 315 18 chr6 110976552 110976837 -38540200 + MTE2b LTR MaLR 6 375 -4 8 1431 332 41 0 0 chr6 110977139 110977188 -38539849 + L1_Mus2 LINE L1 6518 6566 0 8 1431 207 0 0 0 chr6 110977321 110977344 -38539693 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1431 494 308 111 41 chr6 110977536 110977925 -38539112 - LTR37A LTR ERV1 -1 425 10 8 1431 352 223 52 26 chr6 110978156 110978271 -38538766 - MER5B DNA MER1_type -60 118 1 8 1431 184 358 85 85 chr6 110978670 110978835 -38538202 + MER5A DNA MER1_type 18 182 -7 8 1431 249 268 0 35 chr6 110978946 110979004 -38538033 - MER5A DNA MER1_type -133 56 1 8 1431 463 179 9 9 chr6 110979245 110979352 -38537685 + (TA)n Simple_repeat Simple_repeat 1 107 0 8 1431 354 305 11 40 chr6 110980657 110980831 -38536206 - L1MC1 LINE L1 -25 6308 6140 8 1431 586 284 147 17 chr6 110980874 110981282 -38535755 - L1MC1 LINE L1 -289 6044 5584 8 1431 253 291 37 25 chr6 110981452 110981533 -38535504 - PB1D10 SINE Alu -30 87 6 8 1431 282 275 46 0 chr6 110982098 110982207 -38534830 - L1MA4A LINE L1 -373 5930 5817 8 1431 264 59 0 0 chr6 110982225 110982259 -38534778 + (TA)n Simple_repeat Simple_repeat 2 35 0 8 1431 332 304 79 24 chr6 110982259 110982549 -38534488 - L1MA4A LINE L1 -538 5762 5457 8 1431 288 216 91 0 chr6 110982762 110982850 -38534187 - L1MC LINE L1 -2765 3381 3286 8 1431 315 0 0 0 chr6 110983022 110983057 -38533980 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1431 1334 230 108 3 chr6 110983287 110983592 -38533445 - RMER19C LTR ERVK -32 579 243 8 1431 180 0 0 0 chr6 110983632 110983652 -38533385 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 8 1431 2276 132 22 7 chr6 110984425 110984686 -38532351 - Lx3B LINE L1 -605 6368 6107 8 1431 399 21 0 0 chr6 110984686 110984734 -38532303 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1431 2276 132 22 7 chr6 110984734 110984875 -38532162 - Lx3B LINE L1 -867 6106 5960 8 1431 291 109 43 0 chr6 110984896 110984942 -38532095 - U6 snRNA snRNA -59 48 1 8 1431 417 337 16 39 chr6 110985184 110985366 -38531671 + RMER30 DNA MER1_type 18 195 -7 8 1431 3942 79 0 28 chr6 110985590 110985691 -38531346 + L1_Mus2 LINE L1 6047 6145 -421 8 1431 1099 86 0 0 chr6 110985691 110985830 -38531207 + B1_Mm SINE Alu 1 139 -8 8 1431 332 71 18 0 chr6 110985830 110985886 -38531151 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 8 1431 3942 79 0 28 chr6 110985886 110986318 -38530719 + L1_Mus2 LINE L1 6146 6565 -1 8 1431 1107 217 87 35 chr6 110988353 110988639 -38528398 - MTD LTR MaLR -3 416 116 8 1431 667 215 6 6 chr6 110988913 110989091 -38527946 + CT-rich Low_complexity Low_complexity 2 179 0 8 1431 419 297 0 33 chr6 110989570 110989692 -38527345 - ID_B1 SINE B4 0 224 107 8 1431 7789 62 1 1 chr6 110989721 110990766 -38526271 + L1Md_F2 LINE L1 4542 5586 -297 8 1431 8131 50 0 0 chr6 110990766 110991760 -38525277 + L1Md_F2 LINE L1 5587 6580 -2 8 1431 207 0 0 0 chr6 110991798 110991821 -38525216 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1431 270 284 27 0 chr6 110992121 110992195 -38524842 + MER5A1 DNA MER1_type 43 118 -48 8 1431 347 298 19 37 chr6 110992712 110992820 -38524217 + B1F SINE Alu 1 106 -43 8 1431 193 428 0 7 chr6 110993207 110993353 -38523684 + MIR SINE MIR 12 156 -106 8 1431 21 89 0 0 chr6 110993353 110993409 -38523628 + AT_rich Low_complexity Low_complexity 1 56 0 8 1431 415 258 40 40 chr6 110993478 110993603 -38523434 + B1F SINE Alu 24 148 -1 8 1431 201 121 0 0 chr6 110993607 110993640 -38523397 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 8 1431 693 253 58 6 chr6 110993660 110993831 -38523206 + B3A SINE B2 4 183 -15 8 1431 443 148 17 0 chr6 110993834 110993949 -38523088 + (CAGA)n Simple_repeat Simple_repeat 2 118 0 8 1431 572 322 60 11 chr6 110994748 110994930 -38522107 - B3A SINE B2 -5 193 3 8 1431 640 265 58 29 chr6 110995154 110995325 -38521712 - B3 SINE B2 -1 215 40 8 1431 5976 169 32 83 chr6 110996026 110996496 -38520541 + RLTR21 LTR ERVK 1 474 -1098 8 1431 1590 76 9 5 chr6 110996496 110996720 -38520317 - L1_Mus3 LINE L1 -6 6632 6408 8 1431 5976 164 39 78 chr6 110996720 110997647 -38519390 + RLTR21 LTR ERVK 475 1299 -273 8 1431 405 39 0 0 chr6 110997647 110997698 -38519339 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1431 2538 151 55 68 chr6 110997698 110997968 -38519069 + RLTR21 LTR ERVK 1300 1571 -1 8 1431 1181 280 32 62 chr6 110998005 110998375 -38518662 - ORR1D2 LTR MaLR -7 363 5 8 1431 404 286 64 29 chr6 110998704 110998831 -38518206 + L1MA4A LINE L1 5746 5873 -430 8 1431 216 0 0 0 chr6 110998831 110998855 -38518182 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 8 1431 404 286 64 29 chr6 110998855 110998900 -38518137 + L1MA4A LINE L1 5874 5924 -379 8 1431 570 15 0 0 chr6 110998906 110998973 -38518064 + (TG)n Simple_repeat Simple_repeat 1 67 0 8 1431 218 192 19 0 chr6 110999510 110999562 -38517475 + C-rich Low_complexity Low_complexity 2 54 0 8 1431 283 308 34 111 chr6 111001070 111001187 -38515850 - PB1D10 SINE Alu -7 110 3 1 1431 222 169 17 17 chr6 111001316 111001376 -38515661 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 2 1431 1101 246 65 62 chr6 111001711 111002067 -38514970 - MTEa LTR MaLR -22 357 1 3 1431 267 266 12 25 chr6 111003198 111003279 -38513758 + ID4_ SINE ID 2 81 -2 4 1431 981 234 5 15 chr6 111003545 111003749 -38513288 - B3 SINE B2 -14 202 1 5 1431 363 154 0 0 chr6 111003844 111003909 -38513128 + GA-rich Low_complexity Low_complexity 2 66 0 6 1431 310 286 40 32 chr6 111004303 111004421 -38512616 + L2a LINE L2 3264 3426 0 7 1431 253 278 0 93 chr6 111004515 111004622 -38512415 - RMER15 LTR ERVL -173 402 306 8 1431 4822 38 2 2 chr6 111005063 111005643 -38511394 - L1Md_F2 LINE L1 -4 6578 5999 9 1431 207 114 0 0 chr6 111006273 111006308 -38510729 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1431 557 324 32 86 chr6 111006660 111006940 -38510097 - RMER15 LTR ERVL -16 559 295 1 1431 903 276 9 0 chr6 111007905 111008119 -38508918 - B3 SINE B2 0 216 1 1 1431 1118 156 32 5 chr6 111008248 111008435 -38508602 + B2_Mm2 SINE B2 2 193 -2 1 1431 900 258 37 0 chr6 111008532 111008722 -38508315 - B3 SINE B2 0 216 20 1 1431 545 280 61 43 chr6 111008716 111008880 -38508157 + B3A SINE B2 13 179 -19 1 1431 2353 105 25 81 chr6 111009105 111009551 -38507486 + BGLII_Mus LTR ERVK 2 422 0 1 1431 191 162 162 0 chr6 111010581 111010618 -38506419 + MER5A DNA MER1_type 14 56 -133 1 1431 394 345 79 48 chr6 111010917 111011437 -38505600 - L1MC4a LINE L1 -698 7184 6649 1 1431 320 299 202 30 chr6 111011546 111011808 -38505229 - L1MC4a LINE L1 -1390 6492 6186 1 1431 230 263 122 22 chr6 111012674 111012720 -38504317 + RMER17A2 LTR ERVK 278 325 -581 1 1431 285 51 0 0 chr6 111012720 111012759 -38504278 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1431 230 263 122 22 chr6 111012759 111012885 -38504152 + RMER17A2 LTR ERVK 326 469 -437 1 1431 1159 68 0 0 chr6 111012885 111013033 -38504004 - B1_Mus1 SINE Alu 0 148 1 2 1431 230 263 122 22 chr6 111013033 111013088 -38503949 + RMER17A2 LTR ERVK 470 529 -377 1 1431 405 0 0 0 chr6 111013112 111013157 -38503880 + (ATTTG)n Simple_repeat Simple_repeat 2 46 0 2 1431 539 74 0 12 chr6 111013420 111013502 -38503535 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1431 339 266 78 144 chr6 111014427 111014774 -38502263 - L1M5 LINE L1 -2476 3670 3347 2 1431 332 303 65 44 chr6 111015045 111015106 -38501931 - L1MD LINE L1 -3143 3003 2938 2 1431 1642 36 0 0 chr6 111015106 111015299 -38501738 - B2_Mm1t SINE B2 0 193 1 2 1431 332 303 65 44 chr6 111015299 111015558 -38501479 - L1MD LINE L1 -3209 2937 2676 2 1431 360 0 0 0 chr6 111016655 111016695 -38500342 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1432 180 307 75 62 chr6 111018561 111018641 -38498396 + MIRm SINE MIR 116 196 -80 2 1432 314 183 0 14 chr6 111019060 111019132 -38497905 + CT-rich Low_complexity Low_complexity 6 76 0 2 1432 252 296 84 0 chr6 111019147 111019218 -38497819 - PB1D10 SINE Alu -22 95 19 3 1432 195 100 0 0 chr6 111020635 111020665 -38496372 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1432 22 35 0 0 chr6 111020715 111020744 -38496293 + AT_rich Low_complexity Low_complexity 1 29 0 3 1432 297 0 0 0 chr6 111020779 111020812 -38496225 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3 1432 1035 83 0 0 chr6 111020814 111020947 -38496090 - B1_Mm SINE Alu -13 134 2 3 1432 519 311 0 15 chr6 111021061 111021195 -38495842 - RSINE1 SINE B4 -33 132 1 3 1432 1716 209 28 38 chr6 111021289 111021682 -38495355 + Lx LINE L1 6259 6647 -7 3 1432 22553 205 51 133 chr6 111021729 111022775 -38494262 + L1Md_F LINE L1 242 1249 -5389 3 1432 213 39 0 0 chr6 111022775 111022801 -38494236 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1432 22553 111 5 7 chr6 111022801 111026236 -38490801 + L1Md_F LINE L1 1250 4678 -1205 3 1432 547 137 21 0 chr6 111026214 111026309 -38490728 + L1Md_F LINE L1 5135 5231 -652 3 1432 1229 103 0 0 chr6 111026309 111026483 -38490554 + L1_Mus1 LINE L1 6394 6567 0 3 1432 202 114 29 0 chr6 111026823 111026858 -38490179 + (TTG)n Simple_repeat Simple_repeat 3 38 0 4 1432 240 193 35 17 chr6 111027134 111027192 -38489845 + (TATG)n Simple_repeat Simple_repeat 1 59 0 4 1432 692 211 89 27 chr6 111027265 111027411 -38489626 + B3A SINE B2 2 156 -42 4 1432 709 131 0 0 chr6 111028112 111028219 -38488818 - B1_Mus1 SINE Alu -8 140 34 4 1432 691 118 42 8 chr6 111028408 111028528 -38488509 + Lx2 LINE L1 6159 6282 -715 4 1432 798 181 26 16 chr6 111028528 111028719 -38488318 + Lx2 LINE L1 6805 6997 0 4 1432 22 0 0 0 chr6 111029013 111029035 -38488002 + AT_rich Low_complexity Low_complexity 1 22 0 4 1432 216 0 0 0 chr6 111029171 111029195 -38487842 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1432 1036 56 7 7 chr6 111029195 111029339 -38487698 + (GA)n Simple_repeat Simple_repeat 1 145 0 4 1432 287 318 15 15 chr6 111029339 111029473 -38487564 + (TG)n Simple_repeat Simple_repeat 2 135 0 4 1432 691 285 9 9 chr6 111029839 111030055 -38486982 - Lx2B LINE L1 -7 6993 6778 4 1432 1135 219 105 51 chr6 111032255 111032549 -38484488 - Lx5 LINE L1 -63 6987 6678 5 1432 225 121 0 0 chr6 111032544 111032577 -38484460 + Lx5 LINE L1 5953 5985 -1065 5 1432 198 0 0 0 chr6 111032726 111032748 -38484289 + (TTGG)n Simple_repeat Simple_repeat 1 22 0 5 1432 1042 260 131 7 chr6 111032748 111033054 -38483983 + ORR1D1 LTR MaLR 17 360 -14 5 1432 1025 112 0 0 chr6 111033247 111033390 -38483647 + B1_Mus1 SINE Alu 1 143 -5 5 1432 438 69 0 0 chr6 111033698 111033756 -38483281 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1432 3253 48 5 0 chr6 111033893 111034287 -38482750 - MTA_Mm LTR MaLR 0 396 1 5 1432 255 348 11 11 chr6 111034350 111034443 -38482594 + B4A SINE B4 192 284 -8 5 1432 300 27 0 0 chr6 111035141 111035178 -38481859 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1432 789 296 28 51 chr6 111035201 111035454 -38481583 - B4A SINE B4 -42 250 4 5 1432 189 0 0 0 chr6 111036194 111036215 -38480822 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1432 1033 93 0 0 chr6 111036218 111036357 -38480680 - B2_Mm2 SINE B2 -56 139 1 6 1432 273 119 0 0 chr6 111036478 111036520 -38480517 + (CAAT)n Simple_repeat Simple_repeat 1 42 0 6 1432 3530 60 4 25 chr6 111036660 111037130 -38479907 + L1_Mus2 LINE L1 6100 6560 -6 6 1432 3173 54 5 0 chr6 111037130 111037522 -38479515 - MTA_Mm LTR MaLR 0 396 3 6 1432 303 347 118 54 chr6 111037813 111038145 -38478892 - Lx8 LINE L1 -146 7327 6975 6 1432 701 333 96 62 chr6 111038422 111038921 -38478116 - MT2A LTR ERVL -4 529 14 6 1432 1477 289 96 32 chr6 111039743 111040398 -38476639 - Lx8 LINE L1 -28 7445 6749 6 1432 343 349 30 45 chr6 111040564 111040696 -38476341 + ID_B1 SINE B4 77 206 -18 6 1432 283 347 8 41 chr6 111043308 111043431 -38473606 + RSINE1 SINE B4 3 121 -44 6 1432 294 315 0 11 chr6 111044796 111044886 -38472151 - BC1_Mm scRNA scRNA -59 93 5 7 1432 348 247 0 29 chr6 111045589 111045798 -38471239 + CT-rich Low_complexity Low_complexity 1 203 0 7 1432 531 0 0 0 chr6 111046421 111046480 -38470557 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1432 7467 73 4 5 chr6 111046500 111048040 -38468997 - L1Md_F2 LINE L1 -12 6570 5036 7 1432 405 58 0 0 chr6 111048055 111048107 -38468930 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1432 423 0 0 0 chr6 111048133 111048180 -38468857 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1432 777 283 38 121 chr6 111048528 111048874 -38468163 - MTE2a LTR MaLR -62 317 1 7 1432 387 0 0 0 chr6 111049176 111049219 -38467818 + (A)n Simple_repeat Simple_repeat 1 43 0 7 1432 1711 228 156 17 chr6 111049220 111049702 -38467335 - RMER1B Other Other -10 1056 508 7 1432 408 55 0 0 chr6 111051033 111051088 -38465949 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1432 355 233 67 0 chr6 111051270 111051360 -38465677 - Lx8 LINE L1 -358 7115 7020 8 1432 24 0 0 0 chr6 111051506 111051530 -38465507 + AT_rich Low_complexity Low_complexity 1 24 0 8 1432 613 278 190 11 chr6 111053442 111053726 -38463311 + ORR1D1 LTR MaLR 6 340 -34 8 1432 2138 213 29 53 chr6 111054521 111055178 -38461859 - RLTR31_Mm LTR ERVK 0 584 1 8 1432 4744 79 0 1 chr6 111055941 111056813 -38460224 - L1_Mus1 LINE L1 -491 6076 5207 8 1432 3840 64 4 0 chr6 111056813 111057297 -38459740 + L1_Mus1 LINE L1 6081 6566 -1 8 1432 28 0 0 0 chr6 111057820 111057848 -38459189 + AT_rich Low_complexity Low_complexity 1 28 0 8 1432 23 54 0 0 chr6 111057931 111057968 -38459069 + AT_rich Low_complexity Low_complexity 1 37 0 8 1432 258 56 0 0 chr6 111058894 111058930 -38458107 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 8 1432 29 47 0 0 chr6 111059435 111059478 -38457559 + AT_rich Low_complexity Low_complexity 1 43 0 8 1432 208 257 13 39 chr6 111059651 111059728 -38457309 + (TATATG)n Simple_repeat Simple_repeat 1 75 0 8 1432 585 185 0 0 chr6 111059729 111059848 -38457189 + (TA)n Simple_repeat Simple_repeat 2 120 0 9 1432 845 286 19 0 chr6 111060247 111060457 -38456580 - B3 SINE B2 0 216 3 9 1432 293 100 0 20 chr6 111060459 111060510 -38456527 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 1432 293 339 77 57 chr6 111060747 111060994 -38456043 + MIR SINE MIR 11 262 0 9 1432 712 217 193 33 chr6 111061217 111061398 -38455639 + B3 SINE B2 4 213 -3 9 1432 211 222 21 138 chr6 111062364 111062381 -38454656 - B4A SINE B4 -202 90 8 9 1432 340 203 0 104 chr6 111062381 111062458 -38454579 - ID4_ SINE ID -7 76 8 9 1432 438 315 11 68 chr6 111062499 111062690 -38454347 + B3A SINE B2 3 182 -16 9 1432 759 200 14 20 chr6 111062795 111062943 -38454094 + B3 SINE B2 2 148 -68 9 1432 361 62 0 45 chr6 111062951 111063018 -38454019 + (CATA)n Simple_repeat Simple_repeat 4 67 0 9 1432 261 293 29 43 chr6 111063275 111063414 -38453623 + L1M2 LINE L1 5594 5730 -570 1 1432 480 153 0 0 chr6 111063456 111063541 -38453496 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1432 21 0 0 0 chr6 111063885 111063906 -38453131 + AT_rich Low_complexity Low_complexity 1 21 0 1 1432 21 36 0 0 chr6 111064666 111064694 -38452343 + AT_rich Low_complexity Low_complexity 1 28 0 1 1432 646 307 27 0 chr6 111064847 111064997 -38452040 - B3 SINE B2 -57 159 6 1 1432 528 16 0 0 chr6 111065973 111066034 -38451003 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1432 931 157 0 0 chr6 111066035 111066175 -38450862 - B1_Mus2 SINE Alu -6 141 2 1 1432 231 114 0 0 chr6 111066214 111066249 -38450788 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1432 496 43 0 42 chr6 111066249 111066321 -38450716 - B1_Mur4 SINE Alu 0 150 82 1 1432 257 308 12 25 chr6 111066326 111066406 -38450631 - B3A SINE B2 -119 79 1 1 1432 2105 67 7 23 chr6 111066854 111067158 -38449879 - L1_Mm LINE L1 -557 5326 5028 1 1432 388 355 59 7 chr6 111067167 111067303 -38449734 + RSINE1 SINE B4 7 149 -16 1 1432 366 108 0 0 chr6 111067303 111067368 -38449669 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1432 387 273 196 20 chr6 111067758 111067911 -38449126 + MER5A DNA MER1_type 9 188 -1 1 1432 348 367 8 0 chr6 111068632 111068752 -38448285 + B3A SINE B2 30 150 -48 1 1432 872 111 6 0 chr6 111068771 111068933 -38448104 + (CA)n Simple_repeat Simple_repeat 1 163 0 1 1432 578 330 6 6 chr6 111069646 111069829 -38447208 - B3 SINE B2 -5 211 29 1 1432 303 49 0 0 chr6 111070435 111070476 -38446561 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1 1432 464 118 32 0 chr6 111070619 111070712 -38446325 - Lx2B LINE L1 -905 6095 6000 1 1432 243 140 35 0 chr6 111070746 111070803 -38446234 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 1432 2381 159 47 23 chr6 111070803 111071136 -38445901 - L1_Mur2 LINE L1 -603 5274 4943 1 1432 1008 79 21 118 chr6 111071136 111071322 -38445715 + L1_Mus2 LINE L1 6398 6565 -1 1 1432 2381 159 47 23 chr6 111071322 111071459 -38445578 - L1_Mur2 LINE L1 -935 4942 4793 1 1432 582 289 96 40 chr6 111071456 111071705 -38445332 + Lx2B LINE L1 6733 6995 -5 1 1432 24 0 0 0 chr6 111071725 111071749 -38445288 + AT_rich Low_complexity Low_complexity 1 24 0 1 1432 578 200 21 7 chr6 111071749 111071890 -38445147 - Lx4A LINE L1 -2 7056 6914 1 1432 201 108 0 0 chr6 111071905 111071942 -38445095 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 1 1432 501 371 24 12 chr6 111072403 111072654 -38444383 - Lx8 LINE L1 -115 7358 7105 1 1432 992 270 160 60 chr6 111072996 111073477 -38443560 + MT2A LTR ERVL 1 529 -4 1 1432 342 165 0 40 chr6 111073782 111073883 -38443154 + (TTTG)n Simple_repeat Simple_repeat 2 98 0 1 1432 24 0 0 29 chr6 111074343 111074360 -38442677 + AT_rich Low_complexity Low_complexity 1 17 0 1 1432 1249 110 22 0 chr6 111074360 111074542 -38442495 - B2_Mm2 SINE B2 -9 186 1 1 1432 24 0 0 29 chr6 111074542 111074559 -38442478 + AT_rich Low_complexity Low_complexity 1 17 0 1 1432 4664 117 12 86 chr6 111074563 111075425 -38441612 - Lx3A LINE L1 -6 6975 6178 1 1432 7636 88 6 0 chr6 111076271 111077842 -38439195 + L1_Mus1 LINE L1 4989 6567 0 1 1432 22 56 0 0 chr6 111077852 111077888 -38439149 + AT_rich Low_complexity Low_complexity 1 36 0 1 1432 5378 27 0 0 chr6 111077903 111078543 -38438494 - L1_Mm LINE L1 -1109 4774 4135 1 1432 191 95 0 45 chr6 111078734 111078778 -38438259 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 1 1432 365 388 9 80 chr6 111078785 111078998 -38438039 - B4A SINE B4 -68 224 27 1 1432 28 48 0 0 chr6 111079306 111079348 -38437689 + AT_rich Low_complexity Low_complexity 1 42 0 1 1432 261 249 0 15 chr6 111080422 111080487 -38436550 - PB1D10 SINE Alu 0 127 53 1 1432 429 189 0 0 chr6 111080757 111080847 -38436190 + (TA)n Simple_repeat Simple_repeat 1 90 0 1 1432 297 326 7 29 chr6 111080850 111080986 -38436051 - L1_Rod LINE L1 -640 5207 5075 1 1432 2104 200 113 44 chr6 111080986 111081526 -38435511 - RLTR20B3 LTR ERVK 0 577 1 1 1432 705 316 94 6 chr6 111081667 111082008 -38435029 + Lx8 LINE L1 6878 7248 -225 1 1432 1906 199 36 15 chr6 111082086 111082475 -38434562 + MTB_Mm LTR MaLR 1 397 -10 1 1432 649 285 116 43 chr6 111082939 111083240 -38433797 - Tigger1 DNA MER2_type 0 2418 2096 1 1432 1063 271 40 9 chr6 111083248 111083576 -38433461 - Tigger1 DNA MER2_type -523 1895 1558 1 1432 673 318 122 28 chr6 111083599 111084133 -38432904 - Tigger1 DNA MER2_type -1247 1171 588 1 1432 1849 282 58 10 chr6 111084141 111084656 -38432381 - Lx6 LINE L1 -9 7451 6912 1 1432 207 0 0 0 chr6 111084657 111084680 -38432357 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 1432 919 342 89 13 chr6 111084688 111085162 -38431875 - Tigger1 DNA MER2_type -1877 541 32 1 1432 586 203 18 135 chr6 111089484 111089706 -38427331 - MMVL30-int LTR ERV1 -2293 1405 1210 1 1432 266 252 66 90 chr6 111089702 111089824 -38427213 - MMVL30-int LTR ERV1 -2736 962 844 1 1432 300 193 0 0 chr6 111089907 111089964 -38427073 - MMVL30-int LTR ERV1 -2870 828 772 1 1432 194 0 0 37 chr6 111090256 111090283 -38426754 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 1 1432 225 0 0 0 chr6 111090366 111090391 -38426646 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1432 21 0 0 0 chr6 111093220 111093241 -38423796 + AT_rich Low_complexity Low_complexity 1 21 0 1 1432 183 80 0 0 chr6 111095469 111095494 -38421543 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1432 233 292 88 107 chr6 111095539 111095754 -38421283 + RLTR41 LTR ERV1 191 401 -45 1 1432 2110 84 0 10 chr6 111103007 111103307 -38413730 - L1VL4 LINE L1 -5396 906 610 1 1432 1371 135 34 4 chr6 111103307 111103545 -38413492 + Lx LINE L1 6410 6654 0 1 1432 2433 28 0 0 chr6 111103707 111103992 -38413045 + L1Md_F2 LINE L1 5663 5947 -635 1 1432 35740 55 3 4 chr6 111103986 111109324 -38407713 + L1Md_T LINE L1 296 5586 -297 1 1432 8247 41 0 1 chr6 111109325 111110319 -38406718 + L1Md_T LINE L1 5588 6580 -2 1 1432 5120 57 1 3 chr6 111110328 111110977 -38406060 + L1Md_F2 LINE L1 5933 6580 -2 1 1432 1528 319 83 57 chr6 111113611 111114698 -38402339 - L1_Mur3 LINE L1 -1389 4491 3361 1 1432 1300 182 16 0 chr6 111114698 111114945 -38402092 - Lx2B LINE L1 -5 6995 6745 1 1432 1528 319 83 57 chr6 111114945 111115371 -38401666 - L1_Mur3 LINE L1 -2520 3360 2883 1 1432 1303 89 0 6 chr6 111115371 111115552 -38401485 - B2_Mm2 SINE B2 -14 181 2 1 1432 1528 319 83 57 chr6 111115552 111115958 -38401079 - L1_Mur3 LINE L1 -2998 2882 2521 1 1432 1331 257 111 13 chr6 111115958 111116336 -38400701 - MTD LTR MaLR -2 417 3 1 1432 1528 319 83 57 chr6 111116336 111116453 -38400584 - L1_Mur3 LINE L1 -3360 2520 2401 1 1432 473 305 25 53 chr6 111116463 111116658 -38400379 + B3A SINE B2 33 216 0 1 1432 23 33 0 0 chr6 111116664 111116694 -38400343 + AT_rich Low_complexity Low_complexity 1 30 0 1 1432 697 272 64 5 chr6 111116853 111117056 -38399981 - B3 SINE B2 0 216 2 1 1432 29 0 0 0 chr6 111117184 111117213 -38399824 + AT_rich Low_complexity Low_complexity 1 29 0 1 1432 2750 284 62 10 chr6 111117735 111118618 -38398419 - Lx5 LINE L1 -93 6965 5916 1 1432 286 247 141 0 chr6 111118637 111118722 -38398315 + Lx4B LINE L1 6958 7054 -4 1 1432 225 191 0 45 chr6 111118881 111118969 -38398068 + GA-rich Low_complexity Low_complexity 3 86 0 1 1432 491 269 25 16 chr6 111120449 111120570 -38396467 + B3A SINE B2 1 122 -76 1 1432 605 38 0 12 chr6 111120615 111120696 -38396341 + (CATA)n Simple_repeat Simple_repeat 4 83 0 1 1432 386 318 48 0 chr6 111121598 111121724 -38395313 + B1F1 SINE Alu 1 132 -17 1 1432 201 121 0 0 chr6 111122265 111122298 -38394739 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 1 1432 255 248 9 19 chr6 111122458 111122565 -38394472 + (TA)n Simple_repeat Simple_repeat 1 106 0 1 1432 242 360 86 17 chr6 111124001 111124176 -38392861 + MLT1K LTR MaLR 401 587 -8 1 1432 22 0 0 0 chr6 111125779 111125801 -38391236 + AT_rich Low_complexity Low_complexity 1 22 0 1 1432 546 304 81 27 chr6 111126185 111126371 -38390666 + B3A SINE B2 1 196 -2 1 1432 392 310 117 31 chr6 111126383 111126546 -38390491 - B3A SINE B2 -21 177 1 1 1432 612 0 0 0 chr6 111127823 111127891 -38389146 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 1432 1591 27 0 0 chr6 111129092 111129277 -38387760 - L1Md_F3 LINE L1 -802 5782 5598 1 1432 5870 56 15 0 chr6 111129277 111130031 -38387006 + L1Md_F3 LINE L1 5806 6570 -14 1 1432 1847 108 30 24 chr6 111130483 111130778 -38386259 - L1_Mus4 LINE L1 -6 6630 6334 1 1432 223 328 0 0 chr6 111131032 111131093 -38385944 + ID4_ SINE ID 6 66 -17 1 1432 204 97 0 0 chr6 111131110 111131141 -38385896 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1432 207 0 0 0 chr6 111131686 111131709 -38385328 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1432 756 0 0 0 chr6 111131766 111131850 -38385187 + (TTC)n Simple_repeat Simple_repeat 1 84 0 1 1432 294 265 65 47 chr6 111132470 111132577 -38384460 + MTEb LTR MaLR 270 378 -1 1 1432 311 280 8 48 chr6 111132926 111133050 -38383987 + CT-rich Low_complexity Low_complexity 5 123 0 1 1432 1157 49 14 0 chr6 111133234 111133378 -38383659 + B1_Mm SINE Alu 2 147 0 1 1432 309 143 14 0 chr6 111133499 111133569 -38383468 + Lx9 LINE L1 7572 7642 -2 1 1432 35 41 0 0 chr6 111133570 111133619 -38383418 + AT_rich Low_complexity Low_complexity 1 49 0 1 1432 247 350 51 39 chr6 111134798 111134964 -38382073 - MIRb SINE MIR -94 174 3 1 1432 25 0 0 0 chr6 111135982 111136007 -38381030 + AT_rich Low_complexity Low_complexity 1 25 0 1 1432 345 293 20 0 chr6 111136410 111136509 -38380528 - PB1D10 SINE Alu -6 111 11 1 1432 1678 290 70 24 chr6 111136713 111137388 -38379649 - Lx9 LINE L1 -27 7617 6912 1 1432 302 356 57 36 chr6 111138221 111138361 -38378676 + MER20 DNA MER1_type 1 143 -76 1 1432 396 386 79 34 chr6 111138630 111138984 -38378053 - ORR1D2 LTR MaLR 0 370 1 1 1432 863 262 92 92 chr6 111139559 111139929 -38377108 - MTE2a LTR MaLR 0 379 10 1 1432 31 58 0 0 chr6 111140217 111140269 -38376768 + AT_rich Low_complexity Low_complexity 1 52 0 1 1432 4416 116 5 6 chr6 111140271 111140928 -38376109 - Lx3A LINE L1 -8 6973 6318 1 1432 1444 87 5 0 chr6 111140928 111141124 -38375913 - Lx3_Mus LINE L1 -1143 5866 5670 2 1432 366 320 56 44 chr6 111141251 111141431 -38375606 - B3A SINE B2 -16 182 1 2 1432 497 265 196 29 chr6 111143453 111143698 -38373339 - Lx8 LINE L1 -9 7464 7179 2 1432 651 309 44 13 chr6 111143781 111144007 -38373030 - Lx8 LINE L1 -744 6729 6497 2 1432 7311 105 9 1 chr6 111143969 111145072 -38371965 + L1_Mus3 LINE L1 5540 6638 0 2 1432 451 287 35 14 chr6 111145079 111145224 -38371813 - Lx8 LINE L1 -990 6483 6336 2 1432 8323 31 1 0 chr6 111146054 111147465 -38369572 - L1Md_T LINE L1 -2 6580 5167 2 1432 457 305 107 35 chr6 111148168 111148365 -38368672 - B3A SINE B2 -2 214 4 2 1432 21 0 0 0 chr6 111148875 111148896 -38368141 + AT_rich Low_complexity Low_complexity 1 21 0 2 1433 290 204 107 5 chr6 111149368 111149457 -38367580 + L1MA6 LINE L1 5816 5914 -383 2 1433 6082 146 15 0 chr6 111150004 111151006 -38366031 - Lx2 LINE L1 -1 6996 5980 2 1433 8543 19 0 3 chr6 111151561 111152558 -38364479 + L1Md_T LINE L1 4593 5586 -297 2 1433 8078 51 0 0 chr6 111152558 111153553 -38363484 + L1Md_T LINE L1 5587 6581 -1 2 1433 546 252 169 7 chr6 111153922 111154070 -38362967 + B3 SINE B2 38 209 -7 2 1433 188 267 125 29 chr6 111156205 111156309 -38360728 + MIRc SINE MIR 111 224 -44 2 1433 1121 269 119 9 chr6 111157068 111157395 -38359642 - MTE2b LTR MaLR -16 363 1 2 1433 426 143 0 0 chr6 111157533 111157610 -38359427 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1433 297 339 39 39 chr6 111158428 111158557 -38358480 - L2a LINE L2 -1 3425 3297 2 1433 847 295 14 68 chr6 111159119 111159399 -38357638 + B4 SINE B4 2 266 -26 2 1433 441 0 0 0 chr6 111159404 111159453 -38357584 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1433 32190 84 7 51 chr6 111160307 111166686 -38350351 - L1Md_F2 LINE L1 0 6582 511 2 1433 433 362 108 55 chr6 111166755 111166967 -38350070 - MT2A LTR ERVL -75 458 226 2 1433 312 27 0 0 chr6 111166967 111167004 -38350033 + (CAG)n Simple_repeat Simple_repeat 3 39 0 2 1433 430 362 108 55 chr6 111167004 111167226 -38349811 - MT2A LTR ERVL -308 225 1 2 1433 6917 82 14 1 chr6 111168131 111169548 -38347489 - L1_Mus2 LINE L1 0 6566 5131 2 1433 5001 100 18 28 chr6 111169546 111170366 -38346671 + L1_Mus2 LINE L1 4302 5113 -770 2 1433 244 297 90 75 chr6 111171074 111171274 -38345763 + MIRb SINE MIR 36 238 -30 2 1433 416 224 108 30 chr6 111172024 111172153 -38344884 - Lx6 LINE L1 -26 7434 7298 2 1433 270 21 20 41 chr6 111172153 111172202 -38344835 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 1433 416 224 108 30 chr6 111172202 111172238 -38344799 - Lx6 LINE L1 -163 7297 7256 2 1433 249 310 123 8 chr6 111172348 111172478 -38344559 - B1F1 SINE Alu -1 148 4 2 1433 1206 249 73 23 chr6 111172580 111172922 -38344115 - Lx5 LINE L1 -3 7047 6689 2 1433 471 321 32 68 chr6 111173965 111174246 -38342791 - B4A SINE B4 -19 273 3 2 1433 6571 114 40 60 chr6 111174611 111175739 -38341298 - Lx3A LINE L1 -9 6972 5868 2 1433 779 161 15 0 chr6 111176042 111176179 -38340858 + URR1B DNA MER1_type 83 221 -4 2 1433 423 0 0 0 chr6 111179228 111179275 -38337762 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1433 249 172 0 0 chr6 111179276 111179340 -38337697 + GA-rich Low_complexity Low_complexity 2 65 0 2 1433 659 340 32 4 chr6 111179466 111179714 -38337323 - RMER15 LTR ERVL 0 575 321 2 1433 267 297 21 105 chr6 111179755 111179898 -38337139 - RMER15 LTR ERVL -444 131 1 2 1433 31 0 0 0 chr6 111181068 111181099 -38335938 + AT_rich Low_complexity Low_complexity 1 31 0 2 1433 381 318 48 54 chr6 111181960 111182146 -38334891 - MIRc SINE MIR -29 239 55 2 1433 405 0 0 0 chr6 111182228 111182273 -38334764 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1433 237 119 0 0 chr6 111183234 111183276 -38333761 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1433 966 102 0 0 chr6 111183420 111183587 -38333450 + (TC)n Simple_repeat Simple_repeat 1 167 0 2 1433 252 0 0 0 chr6 111184902 111184930 -38332107 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1433 224 335 18 37 chr6 111185059 111185223 -38331814 + CT-rich Low_complexity Low_complexity 4 164 0 2 1433 2424 102 6 0 chr6 111186402 111186746 -38330291 + L1_Mus3 LINE L1 6284 6629 -9 2 1433 225 0 0 0 chr6 111186746 111186771 -38330266 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 2 1433 281 117 0 16 chr6 111186881 111186942 -38330095 + (TAA)n Simple_repeat Simple_repeat 2 61 0 2 1433 416 346 33 19 chr6 111186947 111187159 -38329878 + ID_B1 SINE B4 1 215 -9 2 1433 368 253 23 0 chr6 111188167 111188254 -38328783 + B4A SINE B4 5 93 -199 2 1433 1197 42 18 0 chr6 111189369 111189537 -38327500 + (TAGA)n Simple_repeat Simple_repeat 3 173 0 2 1433 258 340 59 39 chr6 111189565 111189718 -38327319 - RMER15 LTR ERVL -115 460 305 2 1433 1325 139 27 0 chr6 111189868 111190091 -38326946 - Lx LINE L1 0 6654 6426 2 1433 382 359 62 48 chr6 111190325 111190679 -38326358 + ORR1E LTR MaLR 1 359 0 2 1433 328 277 30 0 chr6 111190777 111190878 -38326159 + MER103 DNA DNA 44 147 -19 2 1433 928 238 34 19 chr6 111191410 111191616 -38325421 + B3 SINE B2 1 209 -7 2 1433 1308 266 111 12 chr6 111191756 111192243 -38324794 - Lx2B LINE L1 -12 6988 6454 2 1433 427 261 99 0 chr6 111192251 111192362 -38324675 - B3 SINE B2 -94 122 1 2 1433 23 0 0 0 chr6 111192395 111192418 -38324619 + AT_rich Low_complexity Low_complexity 1 23 0 2 1433 397 346 92 30 chr6 111192639 111192803 -38324234 + B4A SINE B4 2 175 -117 2 1433 462 49 0 0 chr6 111193200 111193261 -38323776 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1433 373 343 0 87 chr6 111193634 111193784 -38323253 + B1F1 SINE Alu 5 141 -8 2 1433 366 23 0 0 chr6 111194196 111194239 -38322798 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1433 315 303 30 10 chr6 111194323 111194423 -38322614 - PB1D10 SINE Alu -7 110 9 2 1433 1887 207 66 2 chr6 111194779 111195219 -38321818 + Lx9 LINE L1 7177 7644 0 2 1433 1956 189 14 36 chr6 111196581 111196997 -38320040 - MTB_Mm LTR MaLR 0 407 1 2 1433 240 224 30 0 chr6 111197069 111197136 -38319901 + GA-rich Low_complexity Low_complexity 2 70 0 2 1433 312 316 20 10 chr6 111197427 111197526 -38319511 + L1MC4a LINE L1 6223 6322 -1560 2 1433 1577 228 58 22 chr6 111197581 111197981 -38319056 - MTD LTR MaLR 0 419 6 2 1433 26 0 0 0 chr6 111198075 111198101 -38318936 + AT_rich Low_complexity Low_complexity 1 26 0 2 1433 378 311 120 58 chr6 111198136 111198378 -38318659 + L1MC4a LINE L1 6557 6813 -1069 2 1433 414 0 0 0 chr6 111198822 111198868 -38318169 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1433 218 32 0 31 chr6 111198978 111199010 -38318027 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 2 1433 741 164 18 0 chr6 111199780 111199887 -38317150 + polypyrimidine Low_complexity Low_complexity 65 174 0 2 1433 953 113 0 7 chr6 111199887 111200038 -38316999 + (TTC)n Simple_repeat Simple_repeat 3 152 0 2 1433 741 164 18 0 chr6 111200038 111200101 -38316936 + polypyrimidine Low_complexity Low_complexity 2 64 0 2 1433 446 300 38 23 chr6 111200410 111200543 -38316494 + B3A SINE B2 34 168 -30 2 1433 21 36 0 0 chr6 111200586 111200614 -38316423 + AT_rich Low_complexity Low_complexity 1 28 0 2 1433 234 260 0 112 chr6 111201481 111201624 -38315413 + Lx9 LINE L1 7514 7640 -4 2 1433 900 225 11 3 chr6 111201971 111202169 -38314868 + B3A SINE B2 5 209 -7 2 1433 799 233 202 127 chr6 111202538 111202856 -38314181 - MTD LTR MaLR 0 419 40 2 1433 396 0 0 0 chr6 111203063 111203107 -38313930 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1433 658 303 0 0 chr6 111204368 111204500 -38312537 - RSINE1 SINE B4 -30 135 4 2 1433 584 319 36 52 chr6 111204772 111205023 -38312014 - MLT2B1 LTR ERVL -271 249 3 2 1433 24 0 0 0 chr6 111205261 111205285 -38311752 + AT_rich Low_complexity Low_complexity 1 24 0 2 1433 288 130 0 0 chr6 111205505 111205551 -38311486 + (A)n Simple_repeat Simple_repeat 1 46 0 2 1433 312 345 33 11 chr6 111205598 111205689 -38311348 + PB1D7 SINE Alu 21 113 -7 2 1433 246 62 0 0 chr6 111205694 111205726 -38311311 + (ATG)n Simple_repeat Simple_repeat 2 33 0 2 1433 259 65 21 21 chr6 111206025 111206072 -38310965 + (TTTTA)n Simple_repeat Simple_repeat 5 51 0 2 1433 218 348 62 37 chr6 111206411 111206572 -38310465 - L2 LINE L2 -429 2990 2826 2 1433 22 35 0 0 chr6 111206602 111206631 -38310406 + AT_rich Low_complexity Low_complexity 1 29 0 2 1433 950 297 55 33 chr6 111206639 111206911 -38310126 + B4 SINE B4 1 278 -14 2 1433 417 70 0 0 chr6 111206925 111206982 -38310055 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1433 377 296 108 30 chr6 111207106 111207273 -38309764 - MER5A DNA MER1_type -9 180 1 2 1433 315 0 0 0 chr6 111209145 111209180 -38307857 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1433 321 286 153 21 chr6 111209378 111209556 -38307481 - B3 SINE B2 -2 193 4 2 1433 1750 128 69 38 chr6 111210070 111210387 -38306650 + ORR1A2 LTR MaLR 1 327 0 2 1433 233 314 43 0 chr6 111210659 111210729 -38306308 + PB1D7 SINE Alu 19 91 -29 2 1433 2012 206 27 7 chr6 111210730 111211175 -38305862 + Lx4B LINE L1 6151 6604 -454 2 1433 302 160 0 0 chr6 111211157 111211207 -38305830 + Lx5 LINE L1 6670 6719 -331 2 1433 439 291 19 0 chr6 111211403 111211506 -38305531 + RSINE1 SINE B4 53 157 -8 2 1433 277 257 43 0 chr6 111211559 111211629 -38305408 + ID4_ SINE ID 11 83 0 2 1433 477 346 82 0 chr6 111212054 111212236 -38304801 + B3A SINE B2 2 198 0 2 1433 1990 59 15 7 chr6 111212981 111213252 -38303785 - L1Md_F3 LINE L1 -1 6583 6311 2 1433 2121 27 0 0 chr6 111213252 111213513 -38303524 + L1Md_F3 LINE L1 5833 6093 -491 2 1433 679 226 7 7 chr6 111213617 111213764 -38303273 + B1_Mur1 SINE Alu 1 147 -2 2 1433 24 0 0 0 chr6 111215288 111215312 -38301725 + AT_rich Low_complexity Low_complexity 1 24 0 3 1433 1902 264 19 69 chr6 111215672 111215984 -38301053 - RLTR18 LTR ERVK -61 555 255 3 1433 1928 182 65 27 chr6 111215984 111216386 -38300651 - MTC LTR MaLR 0 421 5 3 1433 1902 264 19 69 chr6 111216386 111216651 -38300386 - RLTR18 LTR ERVK -362 254 7 3 1433 347 324 20 33 chr6 111216851 111216867 -38300170 - MLT1E2 LTR MaLR -28 477 462 3 1433 626 314 24 0 chr6 111216867 111217077 -38299960 + B3 SINE B2 1 215 -1 3 1433 347 324 20 33 chr6 111217077 111217210 -38299827 - MLT1E2 LTR MaLR -44 461 330 3 1433 501 17 0 0 chr6 111217409 111217467 -38299570 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1433 698 324 24 0 chr6 111217476 111217646 -38299391 - B3A SINE B2 -24 174 1 3 1433 437 296 109 52 chr6 111217646 111217842 -38299195 - MLT1E2 LTR MaLR -402 225 18 3 1433 320 284 28 0 chr6 111218262 111218371 -38298666 - Lx8 LINE L1 -641 6832 6721 3 1433 420 278 82 10 chr6 111218382 111218578 -38298459 + Lx8 LINE L1 7263 7472 -1 3 1433 3427 65 0 22 chr6 111219224 111219680 -38297357 - L1_Mus1 LINE L1 0 6567 6122 3 1433 481 329 69 78 chr6 111220052 111220111 -38296926 - ORR1E LTR MaLR -2 357 300 3 1433 2439 57 0 46 chr6 111220111 111220460 -38296577 + L1Md_F2 LINE L1 6249 6581 -1 3 1433 481 329 69 78 chr6 111220460 111220746 -38296291 - ORR1E LTR MaLR -60 299 15 3 1433 241 263 102 29 chr6 111222462 111222599 -38294438 + RMER17D LTR ERVK 388 534 -355 3 1433 324 238 88 35 chr6 111223220 111223394 -38293643 + RMER17D LTR ERVK 279 456 -433 3 1433 381 43 0 0 chr6 111223394 111223441 -38293596 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1433 324 238 88 35 chr6 111223441 111223527 -38293510 + RMER17D LTR ERVK 457 553 -336 3 1433 707 42 0 10 chr6 111224197 111224293 -38292744 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 3 1433 402 245 27 73 chr6 111227189 111227299 -38289738 - MTE2b LTR MaLR -104 275 171 3 1433 379 343 42 21 chr6 111227304 111227447 -38289590 - MTE2b LTR MaLR -185 194 49 3 1433 418 237 10 20 chr6 111227445 111227544 -38289493 - MTD LTR MaLR -308 111 14 3 1433 393 304 86 7 chr6 111228623 111228792 -38288245 + B3A SINE B2 1 174 -42 3 1433 1224 288 63 12 chr6 111228911 111229245 -38287792 - ORR1D2 LTR MaLR -7 363 13 3 1433 181 209 70 0 chr6 111230216 111230259 -38286778 + L2 LINE L2 1277 1322 -2097 3 1433 203 343 86 0 chr6 111230622 111230692 -38286345 + MIRc SINE MIR 82 157 -111 3 1433 282 301 211 10 chr6 111230875 111231258 -38285779 - L1MDb LINE L1 -2278 4259 3800 3 1433 898 246 10 5 chr6 111231564 111231772 -38285265 - B3 SINE B2 -5 211 3 3 1433 753 349 12 8 chr6 111231900 111232143 -38284894 - B4A SINE B4 -1 291 48 3 1433 461 286 103 15 chr6 111232179 111232442 -38284595 - L1MDb LINE L1 -3197 3340 3055 3 1433 233 341 12 0 chr6 111232445 111232530 -38284507 + (CATA)n Simple_repeat Simple_repeat 2 87 0 3 1433 283 312 56 13 chr6 111232558 111232792 -38284245 - L1MDb LINE L1 -3764 2773 2530 3 1433 446 290 113 33 chr6 111233283 111233338 -38283699 - L1MDb LINE L1 -4847 1786 1730 3 1433 273 29 0 0 chr6 111233338 111233372 -38283665 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1433 612 261 94 43 chr6 111233372 111233944 -38283093 - L1MDb LINE L1 -4904 1729 1109 3 1433 192 40 0 0 chr6 111233954 111233979 -38283058 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 3 1433 334 283 174 0 chr6 111233980 111234072 -38282965 - B1_Mur1 SINE Alu -11 138 31 3 1433 2742 137 21 5 chr6 111234176 111234610 -38282427 + Lx3_Mus LINE L1 6566 7006 -3 3 1433 374 312 25 55 chr6 111234644 111234807 -38282230 + MTEa LTR MaLR 38 195 -164 3 1433 6358 116 48 20 chr6 111234808 111236236 -38280801 - Lx LINE L1 0 6654 5176 3 1433 4719 173 3 9 chr6 111236243 111236674 -38280363 + L1_Mm LINE L1 4211 4643 -1240 3 1433 345 75 0 0 chr6 111236674 111236727 -38280310 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 3 1433 4719 173 3 9 chr6 111236727 111237217 -38279820 + L1_Mm LINE L1 4644 5127 -756 3 1433 588 255 43 58 chr6 111237219 111237424 -38279613 + MTEa LTR MaLR 152 379 -5 3 1433 2515 105 49 13 chr6 111237572 111237720 -38279317 + MTB LTR MaLR 1 151 -249 3 1433 4777 61 2 2 chr6 111237720 111238307 -38278730 + LTRIS_Mus LTR ERV1 1 587 0 3 1433 2515 105 49 13 chr6 111238307 111238544 -38278493 + MTB LTR MaLR 152 400 0 3 1433 736 305 40 116 chr6 111238970 111239367 -38277670 - MTEb LTR MaLR -1 378 12 3 1433 218 237 132 0 chr6 111239466 111239542 -38277495 + MIRb SINE MIR 54 139 -129 3 1433 342 0 0 0 chr6 111239661 111239699 -38277338 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1433 374 64 0 0 chr6 111239892 111239939 -38277098 + HAL1-3A_ME LINE L1 1977 2023 -835 3 1433 287 288 27 0 chr6 111240268 111240341 -38276696 + MIR SINE MIR 22 96 -166 3 1433 3987 87 9 0 chr6 111242720 111243248 -38273789 + L1_Mus3 LINE L1 6100 6632 -6 3 1433 549 0 0 0 chr6 111243268 111243329 -38273708 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 3 1433 656 289 24 14 chr6 111244580 111244787 -38272250 - B3 SINE B2 -7 209 1 3 1433 379 185 15 0 chr6 111244901 111244966 -38272071 - B1_Mus1 SINE Alu -72 76 11 3 1433 396 0 0 0 chr6 111245855 111245899 -38271138 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 1433 270 262 99 12 chr6 111246107 111246188 -38270849 + RSINE1 SINE B4 74 161 -4 3 1433 942 92 0 0 chr6 111246215 111246367 -38270670 + (TG)n Simple_repeat Simple_repeat 2 153 0 3 1433 189 107 0 0 chr6 111247706 111247734 -38269303 + (CATA)n Simple_repeat Simple_repeat 3 30 0 3 1433 200 267 0 0 chr6 111247743 111247788 -38269249 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1433 267 312 21 10 chr6 111247791 111247888 -38269149 + MER58B DNA MER1_type 156 253 -88 3 1433 21 0 0 0 chr6 111248088 111248109 -38268928 + AT_rich Low_complexity Low_complexity 1 21 0 3 1433 276 53 0 0 chr6 111248109 111248147 -38268890 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1433 220 310 138 26 chr6 111248162 111248278 -38268759 - RSINE1 SINE B4 -36 129 1 3 1433 960 9 0 0 chr6 111248296 111248405 -38268632 + (GA)n Simple_repeat Simple_repeat 2 110 0 3 1433 336 24 0 0 chr6 111249150 111249191 -38267846 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1433 186 171 0 0 chr6 111249193 111249234 -38267803 + (ATG)n Simple_repeat Simple_repeat 1 41 0 3 1433 575 279 38 75 chr6 111249312 111249498 -38267539 + B3A SINE B2 2 180 -18 3 1433 210 259 176 0 chr6 111250526 111250611 -38266426 + MIRc SINE MIR 64 163 -105 3 1433 588 201 21 21 chr6 111250994 111251136 -38265901 + Lx6 LINE L1 7288 7429 -31 3 1433 534 301 39 97 chr6 111251513 111251740 -38265297 - MER20 DNA MER1_type -1 218 4 3 1433 4460 188 66 9 chr6 111252332 111253137 -38263900 - RMER13A LTR ERVK -9 851 1 3 1433 693 278 46 6 chr6 111253999 111254083 -38262954 + ID_B1 SINE B4 1 91 -133 3 1433 220 340 69 40 chr6 111254083 111254184 -38262853 + PB1D10 SINE Alu 4 107 -10 3 1433 21 0 0 0 chr6 111255969 111255990 -38261047 + AT_rich Low_complexity Low_complexity 1 21 0 3 1433 337 308 0 55 chr6 111256031 111256158 -38260879 - B3 SINE B2 -84 132 13 3 1433 1926 171 10 88 chr6 111256660 111257044 -38259993 - ORR1B1 LTR MaLR 0 394 41 3 1433 683 291 32 44 chr6 111257742 111258148 -38258889 - Lx9 LINE L1 -48 7596 7196 3 1433 351 390 68 7 chr6 111258227 111258374 -38258663 + B3A SINE B2 4 159 -39 3 1433 543 53 0 0 chr6 111258391 111258466 -38258571 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1433 486 88 0 0 chr6 111258466 111258533 -38258504 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1433 1359 230 101 26 chr6 111260114 111260462 -38256575 + ORR1D1 LTR MaLR 1 374 0 3 1433 332 349 14 88 chr6 111260462 111260660 -38256377 + MLT1A LTR MaLR 173 354 -20 3 1433 745 315 15 59 chr6 111261560 111261830 -38255207 + B4A SINE B4 27 284 -8 3 1433 408 20 0 0 chr6 111264906 111264955 -38252082 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1433 944 149 6 0 chr6 111265077 111265251 -38251786 + CT-rich Low_complexity Low_complexity 4 178 0 3 1433 702 349 23 5 chr6 111265274 111265493 -38251544 - B4A SINE B4 -69 223 1 3 1433 258 105 0 0 chr6 111266125 111266163 -38250874 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1433 428 357 119 0 chr6 111266174 111266291 -38250746 + B4 SINE B4 85 209 -83 3 1433 365 0 22 0 chr6 111266291 111266336 -38250701 + (TAA)n Simple_repeat Simple_repeat 1 46 0 3 1433 428 357 119 0 chr6 111266336 111266403 -38250634 + B4 SINE B4 210 290 -2 3 1433 525 32 0 0 chr6 111266425 111266488 -38250549 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1433 234 276 193 25 chr6 111266535 111266654 -38250383 - MTEa LTR MaLR -12 367 229 3 1433 543 181 0 0 chr6 111267176 111267292 -38249745 + (CA)n Simple_repeat Simple_repeat 1 116 0 3 1433 370 0 40 0 chr6 111267380 111267430 -38249607 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1433 1818 209 27 10 chr6 111267588 111267999 -38249038 - MTC LTR MaLR -3 418 1 3 1433 293 352 49 0 chr6 111269097 111269239 -38247798 + RSINE1 SINE B4 3 151 -14 3 1433 185 196 18 0 chr6 111269240 111269296 -38247741 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 3 1433 437 329 44 38 chr6 111269337 111269789 -38247248 + L1MB8 LINE L1 5620 6074 -104 3 1433 918 28 0 0 chr6 111269794 111269903 -38247134 + (TC)n Simple_repeat Simple_repeat 2 110 0 3 1433 213 39 0 0 chr6 111269903 111269928 -38247109 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 1433 963 316 95 25 chr6 111270302 111270746 -38246291 + RMER5 LTR ERV1 40 514 -20 3 1433 21 36 0 0 chr6 111270887 111270915 -38246122 + AT_rich Low_complexity Low_complexity 1 28 0 3 1433 197 271 33 66 chr6 111271238 111271329 -38245708 + L3 LINE CR1 932 1019 -3470 3 1433 483 252 0 0 chr6 111271343 111271446 -38245591 - ID_B1 SINE B4 -10 214 112 3 1433 1231 303 34 17 chr6 111271454 111271735 -38245302 + ORR1D2 LTR MaLR 9 296 -74 3 1433 1382 84 21 0 chr6 111271735 111271926 -38245111 - B2_Mm2 SINE B2 0 195 1 3 1433 1231 303 34 17 chr6 111271926 111272000 -38245037 + ORR1D2 LTR MaLR 297 370 0 3 1433 219 337 149 11 chr6 111272014 111272101 -38244936 - ID_B1 SINE B4 -124 100 2 3 1433 558 301 5 15 chr6 111273163 111273359 -38243678 + Lx8 LINE L1 6705 6898 -575 3 1433 213 39 0 0 chr6 111274236 111274262 -38242775 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 3 1433 309 82 0 0 chr6 111274437 111274486 -38242551 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1433 733 279 20 78 chr6 111275339 111275584 -38241453 - MER106A DNA MER1_type -5 231 1 3 1433 332 299 58 105 chr6 111276727 111276899 -38240138 + MT2B2 LTR ERVL 113 276 -308 4 1433 818 213 0 0 chr6 111276783 111276919 -38240118 + B1_Mur1 SINE Alu 7 142 -7 4 1433 675 202 156 14 chr6 111277178 111277243 -38239794 - Lx7 LINE L1 0 7696 7622 4 1433 474 18 0 0 chr6 111277243 111277298 -38239739 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1433 675 202 156 14 chr6 111277298 111277443 -38239594 - Lx7 LINE L1 -75 7621 7458 4 1433 648 103 0 0 chr6 111277445 111277552 -38239485 + (CA)n Simple_repeat Simple_repeat 1 107 0 4 1433 2697 207 60 134 chr6 111277552 111277571 -38239466 - Lx7 LINE L1 -238 7458 7444 4 1433 278 51 48 48 chr6 111277571 111277633 -38239404 + (GGGAGA)n Simple_repeat Simple_repeat 2 63 0 4 1433 2697 207 60 134 chr6 111277633 111277771 -38239266 - Lx7 LINE L1 -238 7443 7335 4 1433 486 0 0 0 chr6 111277771 111277825 -38239212 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1433 1033 67 0 7 chr6 111277826 111277961 -38239076 - B1_Mus2 SINE Alu -12 135 2 4 1433 2697 207 60 134 chr6 111277961 111278452 -38238585 - Lx7 LINE L1 -361 7335 6840 4 1433 1582 261 150 0 chr6 111278458 111278729 -38238308 - Lx7 LINE L1 -1182 6514 6175 4 1433 356 0 23 0 chr6 111278729 111278773 -38238264 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1433 1582 261 150 0 chr6 111278773 111279014 -38238023 - Lx7 LINE L1 -1522 6174 5926 4 1433 509 171 47 1 chr6 111279039 111279157 -38237880 + Lx6 LINE L1 5817 5936 -1524 4 1434 337 234 149 19 chr6 111280427 111280588 -38236449 - MamRep434 DNA TcMar -168 258 77 4 1434 257 345 0 48 chr6 111281245 111281370 -38235667 + ID4_ SINE ID 2 120 -32 4 1434 456 244 53 28 chr6 111281393 111281558 -38235479 - ORR1D2 LTR MaLR 0 379 206 4 1434 244 312 26 59 chr6 111281903 111282056 -38234981 - L1MA6 LINE L1 -225 6075 5928 4 1434 22 0 0 0 chr6 111282270 111282292 -38234745 + AT_rich Low_complexity Low_complexity 1 22 0 4 1434 339 324 75 34 chr6 111284122 111284269 -38232768 + RSINE1 SINE B4 11 163 -2 4 1434 571 230 80 53 chr6 111284408 111284596 -38232441 + B3A SINE B2 2 194 -4 4 1434 378 0 0 0 chr6 111284607 111284649 -38232388 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1434 274 305 149 25 chr6 111285167 111285409 -38231628 - B4A SINE B4 -18 274 3 4 1434 398 261 141 7 chr6 111285647 111285782 -38231255 + B4A SINE B4 132 284 -8 4 1434 203 276 17 0 chr6 111285790 111285848 -38231189 + (CATA)n Simple_repeat Simple_repeat 3 61 0 4 1434 3224 214 138 13 chr6 111286113 111286874 -38230163 - RMER13A LTR ERVK 0 860 5 4 1434 492 231 46 9 chr6 111287170 111287279 -38229758 - RSINE1 SINE B4 -28 137 25 4 1434 455 17 0 33 chr6 111287743 111287804 -38229233 + (TTA)n Simple_repeat Simple_repeat 2 60 0 4 1434 270 273 66 55 chr6 111287861 111288043 -38228994 - Lx8 LINE L1 -87 7386 7203 4 1434 1242 138 138 0 chr6 111290407 111290647 -38226390 - Lx LINE L1 -6 6648 6376 4 1434 527 266 39 63 chr6 111290667 111290872 -38226165 - RMER5 LTR ERV1 -334 200 1 4 1434 722 356 11 44 chr6 111291441 111291711 -38225326 + B4A SINE B4 30 290 -2 4 1434 408 71 0 0 chr6 111291775 111291831 -38225206 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1434 747 284 45 93 chr6 111292010 111292076 -38224961 - ORR1E LTR MaLR 0 359 293 4 1434 258 32 0 0 chr6 111292076 111292107 -38224930 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1434 747 284 45 93 chr6 111292107 111292417 -38224620 - ORR1E LTR MaLR -67 292 2 4 1434 613 325 56 35 chr6 111293345 111293629 -38223408 + B4A SINE B4 1 290 -2 4 1434 1879 197 5 47 chr6 111293712 111294096 -38222941 - ORR1B1 LTR MaLR 0 394 27 4 1434 363 326 59 55 chr6 111294361 111294617 -38222420 - MLT1B LTR MaLR -20 370 114 4 1434 446 49 16 0 chr6 111294628 111294689 -38222348 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1434 446 242 11 0 chr6 111294735 111294826 -38222211 - B4A SINE B4 -27 265 174 4 1434 229 191 21 0 chr6 111295428 111295475 -38221562 + (TGG)n Simple_repeat Simple_repeat 2 49 0 4 1434 261 0 0 0 chr6 111295486 111295515 -38221522 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1434 699 305 41 21 chr6 111295636 111295830 -38221207 - B4A SINE B4 -94 198 1 4 1434 271 247 82 0 chr6 111296066 111296224 -38220813 + (TCCTG)n Simple_repeat Simple_repeat 4 174 0 4 1434 235 299 93 43 chr6 111297070 111297231 -38219806 - L2a LINE L2 -49 3377 3209 4 1434 314 45 23 0 chr6 111298355 111298399 -38218638 + (TATG)n Simple_repeat Simple_repeat 3 47 0 4 1434 213 65 0 0 chr6 111298441 111298472 -38218565 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 1434 247 148 16 47 chr6 111299464 111299528 -38217509 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 4 1434 645 80 0 0 chr6 111299843 111299931 -38217106 + (TA)n Simple_repeat Simple_repeat 1 88 0 4 1434 502 41 29 58 chr6 111299932 111300036 -38217001 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 4 1434 609 83 0 0 chr6 111300087 111300171 -38216866 + (TG)n Simple_repeat Simple_repeat 1 84 0 4 1434 300 53 0 0 chr6 111300171 111300209 -38216828 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1434 504 0 0 0 chr6 111300236 111300292 -38216745 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1434 899 196 176 46 chr6 111300300 111300567 -38216470 - MT2A LTR ERVL -232 301 1 4 1434 505 279 106 26 chr6 111300870 111301021 -38216016 - RSINE1 SINE B4 0 165 3 4 1434 1010 297 68 0 chr6 111301566 111301876 -38215161 + ORR1D2 LTR MaLR 1 331 -39 4 1434 610 263 26 0 chr6 111301869 111302021 -38215016 + ORR1D2 LTR MaLR 215 370 0 4 1434 522 0 0 0 chr6 111303656 111303714 -38213323 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 4 1434 2974 147 40 0 chr6 111304551 111305055 -38211982 - RLTR28 LTR ERVL 0 524 1 4 1434 1409 60 0 0 chr6 111306452 111306634 -38210403 + L1Md_T LINE L1 6401 6582 0 4 1434 411 344 55 0 chr6 111307096 111307259 -38209778 + MER5A DNA MER1_type 17 188 -1 4 1434 1016 187 35 5 chr6 111309499 111309698 -38207339 + URR1B DNA MER1_type 1 205 -20 4 1434 531 0 0 0 chr6 111309868 111309927 -38207110 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 4 1434 483 361 49 49 chr6 111310409 111310572 -38206465 - RSINE1 SINE B4 0 165 3 4 1434 195 42 0 0 chr6 111311116 111311140 -38205897 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1434 248 0 0 30 chr6 111313421 111313454 -38203583 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1434 1099 265 146 6 chr6 111313465 111313829 -38203208 - MTD LTR MaLR -2 417 3 4 1434 379 276 19 88 chr6 111313884 111314043 -38202994 - B1_Mur3 SINE Alu -1 148 1 4 1434 603 0 0 0 chr6 111314073 111314140 -38202897 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1434 513 0 0 0 chr6 111314140 111314196 -38202841 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1434 392 19 0 37 chr6 111319710 111319764 -38197273 + (GGGAGA)n Simple_repeat Simple_repeat 3 54 0 4 1434 241 299 26 0 chr6 111321338 111321415 -38195622 - B4A SINE B4 -213 79 1 4 1434 192 280 125 39 chr6 111321468 111321572 -38195465 - L2a LINE L2 -24 3402 3290 4 1434 402 21 0 0 chr6 111323357 111323404 -38193633 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1434 21 36 0 0 chr6 111324343 111324371 -38192666 + AT_rich Low_complexity Low_complexity 1 28 0 4 1434 2623 93 13 18 chr6 111324371 111324764 -38192273 - L1_Mus3 LINE L1 -2 6636 6246 4 1434 987 56 0 0 chr6 111324914 111325040 -38191997 + (TTTTC)n Simple_repeat Simple_repeat 2 127 0 4 1434 1364 280 82 22 chr6 111325067 111325665 -38191372 - Lx8 LINE L1 -30 7443 6810 4 1434 510 17 0 0 chr6 111325672 111325731 -38191306 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1434 201 158 0 0 chr6 111325987 111326025 -38191012 + (TAA)n Simple_repeat Simple_repeat 2 39 0 4 1434 191 88 0 29 chr6 111326026 111326061 -38190976 + (TTA)n Simple_repeat Simple_repeat 1 34 0 4 1434 810 128 0 58 chr6 111327153 111327344 -38189693 + CT-rich Low_complexity Low_complexity 1 180 0 4 1434 437 350 101 29 chr6 111327675 111328131 -38188906 - L2 LINE L2 -1058 2361 1873 4 1434 271 320 39 42 chr6 111328596 111328779 -38188258 + MTE2a LTR MaLR 196 379 0 4 1434 254 404 0 0 chr6 111328779 111328878 -38188159 - Cheshire DNA MER1_type -2321 99 1 4 1434 321 62 46 15 chr6 111329599 111329664 -38187373 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 4 1434 350 219 55 0 chr6 111329894 111329967 -38187070 + B4 SINE B4 1 77 -215 4 1434 767 266 89 0 chr6 111330013 111330216 -38186821 - MTE2b LTR MaLR -158 221 1 4 1434 194 337 90 20 chr6 111330908 111331008 -38186029 + MIR SINE MIR 37 143 -65 4 1434 785 221 0 13 chr6 111331066 111331217 -38185820 + MTD LTR MaLR 49 197 -222 4 1434 672 223 14 0 chr6 111331309 111331448 -38185589 - B1_Mus1 SINE Alu -7 141 1 4 1434 35401 14 0 0 chr6 111332991 111337286 -38179751 + L1Md_A LINE L1 1293 5586 -297 4 1434 8706 19 1 0 chr6 111337286 111338281 -38178756 + L1Md_A LINE L1 5587 6582 0 4 1434 441 81 0 0 chr6 111339513 111339575 -38177462 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 4 1434 221 328 0 0 chr6 111340794 111340855 -38176182 + B2_Mm2 SINE B2 15 75 -120 4 1434 339 284 77 19 chr6 111340847 111340951 -38176086 + B3A SINE B2 81 190 -8 4 1434 33917 44 0 3 chr6 111341344 111346477 -38170560 + L1Md_T LINE L1 374 5589 -297 4 1434 8513 31 0 0 chr6 111346477 111347473 -38169564 + L1Md_T LINE L1 5590 6585 0 4 1434 555 280 45 51 chr6 111347524 111347701 -38169336 - MER58A DNA MER1_type -12 212 37 4 1434 405 0 0 0 chr6 111347857 111347902 -38169135 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1434 272 274 14 0 chr6 111348061 111348134 -38168903 + ID4 SINE ID 1 74 -9 4 1434 772 237 29 113 chr6 111349325 111349563 -38167474 + MTD LTR MaLR 1 218 -201 4 1434 488 295 50 7 chr6 111349608 111349748 -38167289 - MTD LTR MaLR -40 339 194 4 1434 590 279 54 67 chr6 111349757 111349944 -38167093 - B3A SINE B2 0 216 33 4 1434 1682 203 52 22 chr6 111349944 111350306 -38166731 - ORR1C1 LTR MaLR 0 378 6 4 1434 541 306 56 42 chr6 111350336 111350551 -38166486 - MTD LTR MaLR -191 228 11 4 1434 390 276 128 8 chr6 111350584 111350701 -38166336 - B4 SINE B4 -159 133 3 4 1434 1206 177 0 77 chr6 111352411 111352471 -38164566 - ORR1C1 LTR MaLR 0 378 322 4 1434 216 0 0 0 chr6 111352471 111352495 -38164542 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1434 1206 177 0 77 chr6 111352495 111352667 -38164370 - ORR1C1 LTR MaLR -57 321 164 4 1434 613 96 13 52 chr6 111352667 111352821 -38164216 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 5 1434 799 209 17 17 chr6 111352850 111353025 -38164012 - ORR1C1 LTR MaLR -202 176 2 4 1434 310 280 30 65 chr6 111353859 111354027 -38163010 + L3 LINE CR1 4104 4265 -224 5 1434 276 303 115 13 chr6 111354171 111354328 -38162709 - MamRep434 DNA TcMar -34 392 220 5 1434 1200 54 0 7 chr6 111355049 111355198 -38161839 + B1_Mus1 SINE Alu 1 148 0 5 1434 651 289 57 5 chr6 111355376 111355588 -38161449 + ID_B1 SINE B4 1 223 -1 5 1434 349 271 18 61 chr6 111355613 111355727 -38161310 + PB1D10 SINE Alu 9 117 0 5 1434 1191 53 6 17 chr6 111355747 111355921 -38161116 + (TAGA)n Simple_repeat Simple_repeat 4 175 0 5 1434 527 331 48 36 chr6 111355989 111356240 -38160797 + B4A SINE B4 39 292 0 5 1434 25 0 0 0 chr6 111357512 111357537 -38159500 + AT_rich Low_complexity Low_complexity 1 25 0 5 1434 477 0 0 0 chr6 111357701 111357754 -38159283 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 5 1434 840 20 0 0 chr6 111357914 111358012 -38159025 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 5 1434 1126 75 0 13 chr6 111358022 111358171 -38158866 - B1_Mus1 SINE Alu -1 147 1 5 1434 273 29 0 0 chr6 111358226 111358260 -38158777 + (TGG)n Simple_repeat Simple_repeat 2 35 0 5 1434 238 250 49 73 chr6 111358260 111358334 -38158703 - B4A SINE B4 -75 217 144 5 1434 358 361 62 1 chr6 111358526 111358660 -38158377 - B1F2 SINE Alu -7 142 2 5 1434 2849 113 0 0 chr6 111359536 111359953 -38157084 - L1_Mus3 LINE L1 -430 6206 5790 5 1434 2888 119 8 19 chr6 111359953 111360426 -38156611 + L1_Mus3 LINE L1 6168 6635 -3 5 1434 200 176 0 38 chr6 111360949 111361002 -38156035 + T-rich Low_complexity Low_complexity 4 54 0 5 1434 1062 69 7 40 chr6 111361002 111361153 -38155884 - B1_Mus2 SINE Alu 0 147 2 5 1434 283 304 99 28 chr6 111361330 111361472 -38155565 - MER53 DNA hAT -9 184 33 5 1434 345 356 133 52 chr6 111363783 111364091 -38152946 - MLT2F LTR ERVL -82 581 249 5 1434 289 206 0 99 chr6 111364393 111364474 -38152563 + RLTR17 LTR ERVK 111 183 -509 5 1434 36661 39 0 2 chr6 111365524 111371741 -38145296 - L1Md_T LINE L1 0 6585 288 5 1434 959 276 13 33 chr6 111371759 111372049 -38144988 + Lx6 LINE L1 7154 7398 -62 5 1434 1007 81 0 22 chr6 111372263 111372402 -38144635 + B1_Mus1 SINE Alu 1 136 -12 5 1434 759 153 0 0 chr6 111372402 111372533 -38144504 + GA-rich Low_complexity Low_complexity 2 132 0 5 1434 250 333 101 9 chr6 111373218 111373327 -38143710 - MLT1C LTR MaLR -233 234 116 5 1434 196 321 45 45 chr6 111374746 111374834 -38142203 + MIR3 SINE MIR 118 205 -3 5 1434 285 266 51 0 chr6 111375308 111375387 -38141650 - MLT1B LTR MaLR 0 390 308 5 1434 221 125 50 0 chr6 111375473 111375513 -38141524 + (CAGAGA)n Simple_repeat Simple_repeat 2 43 0 5 1434 2174 47 51 0 chr6 111377064 111377338 -38139699 - L1_Mus1 LINE L1 0 6567 6280 5 1434 410 281 31 119 chr6 111377610 111377804 -38139233 - MER20 DNA MER1_type -5 214 38 5 1434 543 85 0 0 chr6 111377862 111377944 -38139093 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 1434 215 31 0 30 chr6 111378618 111378651 -38138386 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1434 180 0 0 0 chr6 111379414 111379434 -38137603 + (CAG)n Simple_repeat Simple_repeat 1 20 0 5 1434 2197 107 6 31 chr6 111379944 111380293 -38136744 - L1_Mus3 LINE L1 0 6638 6299 5 1434 4301 90 25 5 chr6 111381148 111381741 -38135296 - Lx LINE L1 -7 6647 6043 5 1434 424 137 0 76 chr6 111381742 111381821 -38135216 + 4.5SRNA scRNA scRNA 20 92 -2 5 1434 4976 89 27 6 chr6 111381846 111381864 -38135173 - Lx3_Mus LINE L1 -4 7005 6990 5 1434 348 24 0 0 chr6 111381864 111381905 -38135132 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5 1434 4976 89 27 6 chr6 111381905 111382583 -38134454 - Lx3_Mus LINE L1 -20 6989 6294 5 1434 5815 78 1 15 chr6 111382919 111383713 -38133324 + L1Md_F2 LINE L1 5799 6581 -1 5 1434 1115 88 0 0 chr6 111384453 111384600 -38132437 - B1_Mus1 SINE Alu 0 148 2 5 1434 1078 15 0 0 chr6 111385250 111385381 -38131656 - L1Md_F2 LINE L1 -778 5804 5674 5 1434 6489 40 2 17 chr6 111385381 111386199 -38130838 + L1Md_F2 LINE L1 5777 6582 0 5 1434 192 290 16 0 chr6 111387871 111387933 -38129104 + L3 LINE CR1 2613 2675 -1814 5 1434 473 283 6 42 chr6 111388502 111388668 -38128369 + MER5B DNA MER1_type 4 163 -15 5 1434 264 330 0 18 chr6 111389295 111389406 -38127631 - PB1D10 SINE Alu -7 110 2 5 1434 2466 130 27 22 chr6 111389631 111390039 -38126998 - RMER1B Other Other -136 930 521 5 1434 514 333 11 0 chr6 111390206 111390383 -38126654 + B3A SINE B2 5 183 -15 5 1434 30 59 0 0 chr6 111390420 111390471 -38126566 + AT_rich Low_complexity Low_complexity 1 51 0 5 1434 453 116 0 0 chr6 111390977 111391046 -38125991 + (TTA)n Simple_repeat Simple_repeat 1 69 0 5 1434 209 185 118 47 chr6 111391419 111391504 -38125533 + MIRc SINE MIR 177 267 -1 5 1434 1490 198 63 13 chr6 111392205 111392475 -38124562 + Lx2B LINE L1 6577 6847 -153 5 1434 3120 55 10 2 chr6 111392475 111392872 -38124165 - MTB LTR MaLR 0 400 1 5 1434 1490 198 63 13 chr6 111392872 111392979 -38124058 + Lx2B LINE L1 6848 6973 -27 5 1434 316 250 0 0 chr6 111393006 111393070 -38123967 - Lx LINE L1 -503 6151 6088 5 1434 1153 89 0 22 chr6 111393265 111393493 -38123544 + (GAAA)n Simple_repeat Simple_repeat 1 223 0 5 1434 22 0 0 0 chr6 111393931 111393953 -38123084 + AT_rich Low_complexity Low_complexity 1 22 0 5 1434 513 0 0 0 chr6 111394200 111394257 -38122780 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1434 845 261 40 31 chr6 111396275 111396497 -38120540 - ID_B1 SINE B4 0 224 1 5 1434 225 0 0 0 chr6 111397754 111397779 -38119258 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1434 21 0 0 0 chr6 111398860 111398881 -38118156 + AT_rich Low_complexity Low_complexity 1 21 0 5 1434 725 329 52 30 chr6 111399893 111400222 -38116815 - ORR1E LTR MaLR -23 336 1 5 1434 196 279 54 81 chr6 111400546 111400620 -38116417 + L2a LINE L2 3004 3075 -351 5 1434 472 332 80 69 chr6 111400817 111401105 -38115932 - B4A SINE B4 -1 291 1 5 1434 638 310 23 94 chr6 111401750 111402049 -38114988 + B4A SINE B4 1 278 -14 5 1434 288 0 0 0 chr6 111402065 111402097 -38114940 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1434 225 0 0 0 chr6 111402118 111402143 -38114894 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1434 252 0 0 0 chr6 111402903 111402931 -38114106 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1434 384 22 0 0 chr6 111402931 111402975 -38114062 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1434 664 310 51 0 chr6 111402993 111403190 -38113847 - B4A SINE B4 -2 290 84 5 1434 646 115 0 0 chr6 111403576 111403672 -38113365 - Lx3C LINE L1 -417 6559 6464 5 1434 701 58 10 0 chr6 111403700 111403803 -38113234 + (CAAAC)n Simple_repeat Simple_repeat 2 105 0 5 1434 751 343 90 42 chr6 111403816 111404270 -38112767 + MER44B DNA MER2_type 23 498 -52 5 1434 1103 123 6 6 chr6 111404821 111405173 -38111864 + (GAAA)n Simple_repeat Simple_repeat 1 352 0 5 1434 486 0 0 0 chr6 111405174 111405228 -38111809 + (GAAAA)n Simple_repeat Simple_repeat 1 54 0 5 1434 3091 67 0 0 chr6 111405550 111405938 -38111099 - L1Md_F2 LINE L1 -12 6570 6183 5 1434 2033 294 96 41 chr6 111405948 111406925 -38110112 - Lx7 LINE L1 -694 7002 5972 5 1434 339 226 0 0 chr6 111407948 111408027 -38109010 + CT-rich Low_complexity Low_complexity 6 84 0 5 1434 1086 140 0 0 chr6 111408027 111408206 -38108831 + (TTC)n Simple_repeat Simple_repeat 2 180 0 5 1434 1179 48 14 0 chr6 111408215 111408361 -38108676 - B1_Mus1 SINE Alu 0 148 1 5 1434 256 339 184 8 chr6 111408364 111408489 -38108548 - B1F2 SINE Alu 0 149 3 5 1434 605 338 6 0 chr6 111408489 111408575 -38108462 - B4A SINE B4 -205 87 1 5 1434 22 35 0 0 chr6 111410020 111410049 -38106988 + AT_rich Low_complexity Low_complexity 1 29 0 5 1434 204 48 47 23 chr6 111410111 111410154 -38106883 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1434 207 100 0 0 chr6 111410191 111410221 -38106816 + (T)n Simple_repeat Simple_repeat 1 30 0 5 179 7823 29 18 4 chr6 111410248 111411368 -38105669 - L1Md_F3 LINE L1 -1 6583 5448 5 1435 1501 49 0 19 chr6 111411369 111411578 -38105459 + L1Md_F3 LINE L1 5220 5424 -459 5 1435 541 342 7 0 chr6 111412079 111412228 -38104809 + B3 SINE B2 3 152 -64 5 1435 426 79 0 0 chr6 111412243 111412306 -38104731 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1435 268 231 0 37 chr6 111412467 111412514 -38104523 + ID4 SINE ID 27 73 -10 5 1435 207 0 0 0 chr6 111412514 111412537 -38104500 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 5 1435 36775 8 0 0 chr6 111412688 111418273 -38098764 + L1Md_A LINE L1 3 5586 -297 5 1435 9026 4 0 0 chr6 111418273 111419269 -38097768 + L1Md_A LINE L1 5587 6582 0 5 1435 1036 59 7 0 chr6 111419284 111419420 -38097617 + B1_Mm SINE Alu 11 147 0 5 1435 297 128 0 0 chr6 111419420 111419467 -38097570 + (A)n Simple_repeat Simple_repeat 1 47 0 5 1435 296 301 97 0 chr6 111419999 111420102 -38096935 - PB1D7 SINE Alu -7 113 1 5 1435 422 268 113 26 chr6 111421654 111421849 -38095188 + B3 SINE B2 2 213 -3 5 1435 209 81 0 75 chr6 111422292 111422332 -38094705 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 5 1435 620 307 13 7 chr6 111423734 111423885 -38093152 + B3A SINE B2 1 152 -46 5 1435 204 67 0 0 chr6 111424595 111424625 -38092412 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1435 293 244 208 25 chr6 111425493 111425695 -38091342 + Lx9 LINE L1 7275 7513 -131 5 1435 425 133 0 13 chr6 111425704 111425780 -38091257 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 1435 189 301 26 40 chr6 111426017 111426093 -38090944 - L2 LINE L2 -581 2838 2764 5 1435 869 185 6 0 chr6 111426265 111426443 -38090594 + (TA)n Simple_repeat Simple_repeat 1 179 0 6 1435 3661 107 13 2 chr6 111427133 111427667 -38089370 - L1_Mus3 LINE L1 -5 6633 6094 6 1435 2807 106 0 0 chr6 111427856 111428270 -38088767 + L1_Mus4 LINE L1 5873 6286 -350 6 1435 6433 160 10 14 chr6 111428268 111429469 -38087568 - L1_Mm LINE L1 -300 5583 4388 6 1435 375 129 0 0 chr6 111429469 111429539 -38087498 - L1_Mur1 LINE L1 -2149 3737 3668 6 1435 8513 112 10 16 chr6 111429537 111430114 -38086923 - L1VL4 LINE L1 -1275 2284 1697 6 1435 537 16 0 0 chr6 111430114 111430176 -38086861 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1435 8513 116 11 18 chr6 111430176 111431081 -38085956 - L1VL4 LINE L1 -1863 1696 817 6 1435 378 0 0 0 chr6 111431081 111431123 -38085914 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 6 1435 3626 189 18 57 chr6 111431123 111431825 -38085212 - L1VL4 LINE L1 -5486 816 141 6 1435 558 0 0 0 chr6 111431918 111431980 -38085057 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1435 420 146 0 0 chr6 111432550 111432639 -38084398 + (TC)n Simple_repeat Simple_repeat 2 90 0 6 1435 213 218 0 18 chr6 111432640 111432696 -38084341 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1435 792 89 0 0 chr6 111433009 111433132 -38083905 + (TC)n Simple_repeat Simple_repeat 2 124 0 6 1435 232 238 0 16 chr6 111433133 111433197 -38083840 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1435 395 404 58 11 chr6 111434038 111434316 -38082721 + B4A SINE B4 1 291 -1 6 1435 1728 239 33 27 chr6 111434358 111434723 -38082314 - MTD LTR MaLR 0 419 53 6 1435 3145 33 0 0 chr6 111435587 111435954 -38081083 + L1Md_F2 LINE L1 6204 6570 -12 6 1435 221 228 0 12 chr6 111436641 111436721 -38080316 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 6 1435 398 303 0 35 chr6 111436736 111436953 -38080084 + (TATG)n Simple_repeat Simple_repeat 1 209 0 6 1435 397 295 17 23 chr6 111436966 111437143 -38079894 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 6 1435 713 99 0 18 chr6 111437260 111437373 -38079664 + (CATATA)n Simple_repeat Simple_repeat 3 113 0 6 1435 322 342 7 13 chr6 111437387 111437541 -38079496 + (TATATG)n Simple_repeat Simple_repeat 2 154 0 6 1435 6167 66 88 0 chr6 111437836 111438657 -38078380 - RLTR13B1 LTR ERVK 0 893 1 6 1435 270 0 0 0 chr6 111439255 111439285 -38077752 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1435 227 288 25 14 chr6 111439798 111439888 -38077149 - MIR SINE MIR -10 258 166 6 1435 357 150 60 8 chr6 111440211 111440345 -38076692 + CT-rich Low_complexity Low_complexity 2 142 0 6 1435 351 352 42 37 chr6 111440534 111440723 -38076314 - Tigger9b DNA MER2_type -406 218 29 6 1435 418 331 90 0 chr6 111440946 111441124 -38075913 - Lx8 LINE L1 -185 7288 7095 6 1435 423 0 0 0 chr6 111441429 111441476 -38075561 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 6 1435 459 232 61 40 chr6 111441487 111441685 -38075352 - L1MA8 LINE L1 -8 6283 6082 6 1435 190 263 137 26 chr6 111441702 111441819 -38075218 + L2b LINE L2 3228 3357 -18 6 1435 447 19 0 0 chr6 111441870 111441922 -38075115 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1435 256 374 57 13 chr6 111442562 111442719 -38074318 + RMER15 LTR ERVL 392 555 -20 6 1435 284 268 85 0 chr6 111443326 111443408 -38073629 - MIR SINE MIR -65 197 109 6 1435 216 410 44 13 chr6 111447192 111447350 -38069687 + MIRb SINE MIR 22 184 -84 6 1435 24 67 0 0 chr6 111447802 111447847 -38069190 + AT_rich Low_complexity Low_complexity 1 45 0 6 1435 255 387 70 13 chr6 111447989 111448146 -38068891 - MIRb SINE MIR -90 178 13 6 1435 444 220 46 30 chr6 111448222 111448353 -38068684 - HAL1-2a_MD LINE L1 -510 2514 2382 6 1435 333 0 0 0 chr6 111449336 111449373 -38067664 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1435 191 189 19 0 chr6 111452070 111452123 -38064914 + CT-rich Low_complexity Low_complexity 2 55 0 6 1435 384 284 0 109 chr6 111452600 111452738 -38064299 + B2_Mm2 SINE B2 3 125 -70 6 1435 7141 71 1 0 chr6 111452823 111453778 -38063259 + L1_Mus1 LINE L1 5612 6567 0 6 1435 385 250 58 0 chr6 111454480 111454584 -38062453 + RSINE1 SINE B4 15 124 -41 6 1435 369 0 0 0 chr6 111454586 111454627 -38062410 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1435 494 75 0 69 chr6 111455696 111455797 -38061240 - L1Md_F3 LINE L1 -2 6582 6489 6 1435 508 336 104 64 chr6 111455817 111456097 -38060940 + B4A SINE B4 2 292 0 6 1435 181 380 10 39 chr6 111456886 111456990 -38060047 - L2c LINE L2 -316 3071 2971 6 1435 627 39 0 0 chr6 111457215 111457293 -38059744 + (GA)n Simple_repeat Simple_repeat 2 79 0 6 1435 615 322 17 0 chr6 111457556 111457733 -38059304 + B3A SINE B2 2 181 -17 6 1435 813 21 0 0 chr6 111458044 111458139 -38058898 + (TC)n Simple_repeat Simple_repeat 2 96 0 6 1435 279 325 8 8 chr6 111458734 111458852 -38058185 + CT-rich Low_complexity Low_complexity 4 121 0 6 1435 594 313 103 11 chr6 111458948 111459210 -38057827 - B4A SINE B4 -6 286 1 6 1435 237 309 12 23 chr6 111460179 111460265 -38056772 + CT-rich Low_complexity Low_complexity 3 87 0 6 1435 248 91 0 22 chr6 111460774 111460819 -38056218 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 6 1435 186 250 117 64 chr6 111462978 111463072 -38053965 + MIR SINE MIR 122 220 -42 6 1435 4914 256 72 33 chr6 111463108 111463857 -38053180 - Lx6 LINE L1 -6 7454 6679 6 1435 1090 51 0 55 chr6 111463857 111464003 -38053034 + B1_Mus2 SINE Alu 1 138 -9 6 1435 878 113 14 0 chr6 111464003 111464144 -38052893 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 6 1435 4914 256 72 33 chr6 111464144 111464986 -38052051 - Lx6 LINE L1 -782 6678 5802 6 1435 435 303 8 0 chr6 111465037 111465159 -38051878 - MER3 DNA MER1_type -12 197 75 6 1435 465 110 0 0 chr6 111465832 111465905 -38051132 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1435 226 330 125 98 chr6 111465922 111466167 -38050870 + B4A SINE B4 3 271 -21 6 1435 195 42 0 0 chr6 111466205 111466229 -38050808 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1435 311 292 35 35 chr6 111466284 111466426 -38050611 - RMER12 LTR ERVK -452 870 729 6 1435 199 360 51 26 chr6 111467208 111467325 -38049712 - L2c LINE L2 -38 3349 3230 6 1435 540 333 40 0 chr6 111467739 111467885 -38049152 - MER20 DNA MER1_type -6 213 65 6 1435 441 0 0 0 chr6 111467885 111467934 -38049103 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1435 540 333 40 0 chr6 111467934 111467961 -38049076 - MER20 DNA MER1_type -155 64 35 6 1435 268 217 216 108 chr6 111468294 111468431 -38048606 + B2_Mm2 SINE B2 1 155 -40 6 1435 423 0 0 0 chr6 111468431 111468478 -38048559 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1435 268 217 216 108 chr6 111468478 111468516 -38048521 + B2_Mm2 SINE B2 156 195 0 6 1435 201 39 0 0 chr6 111468675 111468701 -38048336 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 6 1435 3077 83 36 9 chr6 111469031 111469471 -38047566 - Lx3_Mus LINE L1 -1 7008 6557 6 1435 6005 79 5 9 chr6 111469471 111470329 -38046708 + L1_Mur1 LINE L1 4973 5826 -60 6 1435 639 194 53 73 chr6 111471679 111471829 -38045208 + B1_Mur1 SINE Alu 3 149 0 6 1435 678 179 0 0 chr6 111472469 111472603 -38044434 + GA-rich Low_complexity Low_complexity 1 134 0 6 1435 305 267 13 0 chr6 111472750 111472825 -38044212 - MER5A1 DNA MER1_type 0 166 91 6 1435 254 413 72 7 chr6 111473615 111473754 -38043283 + MER5A DNA MER1_type 23 170 -19 6 1435 1117 88 53 0 chr6 111473891 111474062 -38042975 - L1_Mus4 LINE L1 -510 6126 5947 6 1435 3610 105 8 15 chr6 111474062 111474592 -38042445 + Lx LINE L1 6123 6648 -6 6 1435 27 29 0 0 chr6 111474752 111474786 -38042251 + AT_rich Low_complexity Low_complexity 1 34 0 6 1435 1074 58 0 0 chr6 111475423 111475562 -38041475 - B1_Mus1 SINE Alu 0 148 10 6 1435 533 199 39 117 chr6 111475428 111475582 -38041455 - B4 SINE B4 -71 221 80 6 1435 466 244 129 104 chr6 111476217 111476418 -38040619 - B3A SINE B2 -7 209 4 6 1435 234 0 0 0 chr6 111477116 111477142 -38039895 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1435 237 361 52 30 chr6 111477170 111477304 -38039733 - MER77 LTR ERVL -234 373 237 6 1435 342 169 0 0 chr6 111477520 111477585 -38039452 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1435 279 0 0 0 chr6 111477804 111477835 -38039202 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1435 803 291 9 28 chr6 111477955 111478171 -38038866 - B4 SINE B4 -74 218 7 6 1435 195 360 51 26 chr6 111478747 111478864 -38038173 - L2c LINE L2 -185 3202 3083 6 1435 432 0 0 0 chr6 111479141 111479189 -38037848 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1435 36 53 0 0 chr6 111479241 111479298 -38037739 + AT_rich Low_complexity Low_complexity 1 57 0 6 1435 306 0 0 0 chr6 111480842 111480876 -38036161 + (CAATA)n Simple_repeat Simple_repeat 4 37 0 6 1435 210 71 0 0 chr6 111481046 111481074 -38035963 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1435 332 330 28 0 chr6 111481697 111481806 -38035231 + MER5A1 DNA MER1_type 34 145 -21 6 1435 25 31 0 0 chr6 111482623 111482655 -38034382 + AT_rich Low_complexity Low_complexity 1 32 0 6 1435 2574 210 68 57 chr6 111483158 111484267 -38032770 - RMER12 LTR ERVK -3 1319 40 6 1435 408 40 0 0 chr6 111484311 111484361 -38032676 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1435 189 319 148 18 chr6 111485565 111485734 -38031303 - MIR SINE MIR -16 246 56 6 1435 1324 170 0 4 chr6 111488780 111489005 -38028032 + URR1B DNA MER1_type 1 224 -1 6 1435 540 101 0 0 chr6 111489267 111489356 -38027681 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 6 1435 572 368 107 19 chr6 111489356 111489401 -38027636 - B4A SINE B4 -23 269 217 6 1435 279 0 0 0 chr6 111489401 111489432 -38027605 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1435 572 370 107 18 chr6 111489432 111489632 -38027405 - B4A SINE B4 -76 216 2 6 1435 912 9 0 0 chr6 111490585 111490690 -38026347 + (TG)n Simple_repeat Simple_repeat 2 106 0 6 1435 901 283 0 5 chr6 111491147 111491353 -38025684 + B3 SINE B2 6 210 -6 7 1435 23 33 0 0 chr6 111491940 111491970 -38025067 + AT_rich Low_complexity Low_complexity 1 30 0 7 1435 192 77 0 0 chr6 111491994 111492020 -38025017 + (TA)n Simple_repeat Simple_repeat 1 26 0 7 1435 456 19 0 0 chr6 111492481 111492534 -38024503 + (TC)n Simple_repeat Simple_repeat 2 54 0 7 1435 198 0 0 0 chr6 111492534 111492555 -38024482 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1435 315 0 0 0 chr6 111492555 111492589 -38024448 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 1435 993 286 108 19 chr6 111493125 111493449 -38023588 - ORR1D2 LTR MaLR -17 353 1 7 1435 336 24 0 0 chr6 111493493 111493534 -38023503 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1435 525 294 52 12 chr6 111493553 111493883 -38023154 - L1MA4 LINE L1 -375 5925 5583 7 1435 24874 14 2 9 chr6 111496007 111500000 -38017037 + L1Md_A LINE L1 260 4217 -1666 7 1435 11420 13 1 0 chr6 111500000 111501368 -38015669 + L1Md_A LINE L1 4218 5586 -297 1 1435 8929 10 0 0 chr6 111501368 111502364 -38014673 + L1Md_A LINE L1 5587 6582 0 1 1435 450 53 0 0 chr6 111502506 111502563 -38014474 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1435 237 33 0 0 chr6 111502599 111502629 -38014408 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 1435 280 227 39 39 chr6 111502892 111502970 -38014067 + MTEa LTR MaLR 300 377 -2 4 1435 409 291 119 6 chr6 111503349 111503373 -38013664 - B3 SINE B2 -2 214 188 5 1435 405 86 0 0 chr6 111503373 111503431 -38013606 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1435 430 297 120 5 chr6 111503431 111503600 -38013437 - B3A SINE B2 -29 187 1 5 1435 770 56 0 46 chr6 111503787 111503918 -38013119 - L1Md_F2 LINE L1 -1 6581 6457 7 1435 1301 104 89 0 chr6 111503924 111504126 -38012911 - Lx LINE L1 -3 6651 6432 8 1435 378 280 7 114 chr6 111504617 111504766 -38012271 - B1_Mur1 SINE Alu -16 133 1 9 1435 198 0 0 0 chr6 111504769 111504791 -38012246 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1 1435 477 34 0 0 chr6 111504798 111504857 -38012180 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1435 225 355 98 15 chr6 111505177 111505312 -38011725 + L2b LINE L2 3244 3418 -8 1 1435 645 204 0 0 chr6 111505737 111505874 -38011163 + (TA)n Simple_repeat Simple_repeat 1 137 0 1 1435 414 57 0 0 chr6 111505861 111505914 -38011123 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1435 604 245 101 21 chr6 111506195 111506383 -38010654 + B3 SINE B2 1 203 -13 1 1435 209 33 33 0 chr6 111506383 111506413 -38010624 + (TTAAA)n Simple_repeat Simple_repeat 3 33 0 1 1435 410 309 93 13 chr6 111507785 111507936 -38009101 + RSINE1 SINE B4 3 165 0 1 1435 215 280 0 0 chr6 111507937 111507987 -38009050 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1435 273 169 116 63 chr6 111508740 111508835 -38008202 - RLTR42 LTR ERVK 0 239 140 1 1435 732 245 25 45 chr6 111509530 111509731 -38007306 + B3A SINE B2 2 198 0 2 1435 2377 231 37 57 chr6 111509829 111510482 -38006555 + Lx2B LINE L1 6350 6989 -11 2 1435 302 229 146 45 chr6 111511029 111511139 -38005898 + RSINE1 SINE B4 9 129 -36 2 1435 30 0 0 0 chr6 111511208 111511238 -38005799 + AT_rich Low_complexity Low_complexity 1 30 0 2 1435 864 288 0 0 chr6 111511460 111511658 -38005379 + B3 SINE B2 11 208 -8 2 1435 624 296 14 47 chr6 111512518 111512731 -38004306 - ID_B1 SINE B4 -18 206 1 2 1435 2136 50 0 0 chr6 111513244 111513506 -38003531 - L1Md_T LINE L1 0 6582 6321 2 1435 5825 21 15 0 chr6 111513506 111514253 -38002784 + L1Md_T LINE L1 5552 6305 -277 2 1435 818 294 9 0 chr6 111514362 111514580 -38002457 + ID_B1 SINE B4 2 221 -3 2 1435 23 0 0 0 chr6 111516575 111516598 -38000439 + AT_rich Low_complexity Low_complexity 1 23 0 2 1435 789 296 78 19 chr6 111517886 111518154 -37998883 + B4 SINE B4 7 290 -2 2 1435 543 131 22 0 chr6 111518259 111518396 -37998641 + (TAGA)n Simple_repeat Simple_repeat 3 142 0 3 1435 706 124 37 0 chr6 111518407 111518568 -37998469 + (TAGA)n Simple_repeat Simple_repeat 3 169 0 3 1435 3823 128 25 45 chr6 111519083 111519731 -37997306 - Lx2A1 LINE L1 -1 7007 6373 3 1435 319 287 18 98 chr6 111521016 111521128 -37995909 + PB1D7 SINE Alu 14 116 -4 3 1435 261 239 59 15 chr6 111523160 111523228 -37993809 - MER5A DNA MER1_type -61 128 58 3 1435 342 0 0 0 chr6 111524732 111524770 -37992267 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1435 799 76 0 8 chr6 111524944 111525063 -37991974 - Lx LINE L1 0 6654 6537 3 1435 240 272 60 24 chr6 111525068 111525125 -37991912 + B4 SINE B4 173 232 -60 3 1435 476 250 15 30 chr6 111525125 111525257 -37991780 + RSINE1 SINE B4 3 132 -33 3 1435 426 39 0 0 chr6 111525293 111525345 -37991692 + (ATG)n Simple_repeat Simple_repeat 2 53 0 3 1435 701 94 0 41 chr6 111525366 111525488 -37991549 + Lx LINE L1 6465 6581 -73 3 1435 185 328 58 29 chr6 111525828 111525966 -37991071 + MER5B DNA MER1_type 1 142 -36 4 1435 281 60 0 57 chr6 111526097 111526150 -37990887 + (CAAAAA)n Simple_repeat Simple_repeat 3 52 0 4 1435 297 0 0 0 chr6 111526295 111526328 -37990709 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1435 387 105 0 0 chr6 111526328 111526385 -37990652 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 4 1435 346 261 57 0 chr6 111526416 111526504 -37990533 + MLT1A0 LTR MaLR 9 101 -264 4 1435 262 302 145 20 chr6 111526562 111526714 -37990323 + MLT1A0 LTR MaLR 184 354 -11 4 1435 372 22 0 0 chr6 111526717 111526762 -37990275 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1435 503 335 24 0 chr6 111526863 111527030 -37990007 + MTEa LTR MaLR 1 171 -208 4 1435 278 343 46 9 chr6 111527491 111527600 -37989437 + MER81 DNA AcHobo 2 114 0 4 1435 374 286 39 0 chr6 111528502 111528609 -37988428 + PB1D7 SINE Alu 7 117 -3 4 1435 21 36 0 0 chr6 111528611 111528639 -37988398 + AT_rich Low_complexity Low_complexity 1 28 0 4 1435 608 191 35 0 chr6 111528718 111528833 -37988204 + ETnERV2-int LTR ERVK 7070 7188 -218 5 1435 346 267 26 8 chr6 111529408 111529525 -37987512 + RLTR45-int LTR ERVK 188 306 -6938 5 1435 253 214 86 0 chr6 111529710 111529780 -37987257 + RLTR45-int LTR ERVK 255 330 -5076 5 1435 272 410 89 8 chr6 111529943 111530066 -37986971 - B3A SINE B2 -16 182 50 5 1435 747 182 0 8 chr6 111530057 111530179 -37986858 - B3 SINE B2 -93 123 3 5 1435 232 317 201 18 chr6 111530367 111530531 -37986506 + MLT1D LTR MaLR 2 195 -310 5 1435 1432 106 5 0 chr6 111530533 111530751 -37986286 - L1_Mus2 LINE L1 -442 6124 5906 5 1435 181 53 25 50 chr6 111530757 111530797 -37986240 + (TTG)n Simple_repeat Simple_repeat 2 40 0 5 1435 2902 90 34 14 chr6 111530797 111531208 -37985829 + L1_Mus2 LINE L1 6147 6565 -1 5 1435 1761 32 0 48 chr6 111531497 111531724 -37985313 + L1_Mus1 LINE L1 6352 6567 0 5 1435 267 31 0 0 chr6 111531912 111531944 -37985093 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1435 333 369 0 0 chr6 111532047 111532150 -37984887 - Tigger5 DNA MER2_type 0 2406 2304 5 1435 591 320 47 21 chr6 111532167 111532400 -37984637 - Tigger5 DNA MER2_type -2166 240 2 5 1435 668 295 80 45 chr6 111533720 111534121 -37982916 + MTD LTR MaLR 1 415 -4 6 1435 379 326 149 39 chr6 111534491 111534826 -37982211 + HAL1-3A_ME LINE L1 2074 2445 -413 6 1435 208 191 21 0 chr6 111535505 111535552 -37981485 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1435 251 333 48 0 chr6 111536070 111536133 -37980904 - B1F2 SINE Alu -83 66 1 6 1435 255 258 0 15 chr6 111536539 111536606 -37980431 + MLT1C LTR MaLR 63 128 -339 6 1435 289 389 25 85 chr6 111536986 111537126 -37979911 + MLT1C LTR MaLR 179 316 -151 6 1435 591 40 0 0 chr6 111537126 111537200 -37979837 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 1435 289 389 25 85 chr6 111537200 111537295 -37979742 + MLT1C LTR MaLR 317 399 -68 6 1435 641 344 25 39 chr6 111537569 111537853 -37979184 + B4 SINE B4 1 280 -12 6 1435 333 0 0 0 chr6 111537903 111537940 -37979097 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1435 360 0 0 0 chr6 111537942 111537982 -37979055 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 1435 504 0 0 0 chr6 111538957 111539013 -37978024 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1435 282 306 119 0 chr6 111540131 111540265 -37976772 + MIRc SINE MIR 69 218 -50 7 1435 180 364 66 107 chr6 111540559 111540802 -37976235 - L2b LINE L2 -74 3301 3069 7 1436 479 330 87 66 chr6 111542991 111543338 -37973699 + ORR1E LTR MaLR 6 359 0 7 1436 33118 57 1 2 chr6 111543747 111548857 -37968180 + L1Md_F3 LINE L1 481 5586 -297 7 1436 8140 36 5 2 chr6 111548857 111549843 -37967194 + L1Md_F3 LINE L1 5587 6575 -9 7 1436 242 352 74 27 chr6 111550329 111550478 -37966559 + MLT1A1 LTR MaLR 245 400 -8 7 1436 1267 163 63 38 chr6 111552970 111553257 -37963780 - RMER1C Other Other 0 1342 1049 7 1436 520 169 0 0 chr6 111553257 111553334 -37963703 + 5S rRNA rRNA 13 89 -32 7 1436 393 317 68 62 chr6 111553334 111553449 -37963588 + AmnSINE1 SINE SINE 13 205 -370 7 1436 1183 284 37 24 chr6 111553508 111553836 -37963201 + MTEb LTR MaLR 13 344 -35 7 1436 321 279 15 23 chr6 111553839 111553971 -37963066 + (TCTCTG)n Simple_repeat Simple_repeat 2 132 0 7 1436 279 79 0 0 chr6 111553976 111554014 -37963023 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1436 658 336 61 32 chr6 111554039 111554285 -37962752 - B4A SINE B4 -36 256 4 8 1436 279 0 0 0 chr6 111555690 111555721 -37961316 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1436 184 301 30 61 chr6 111556860 111556959 -37960078 + MIR SINE MIR 43 138 -70 8 1436 875 92 130 0 chr6 111556982 111557113 -37959924 + B1_Mus1 SINE Alu 1 148 0 8 1436 812 254 158 102 chr6 111557164 111557506 -37959531 + ORR1D2 LTR MaLR 1 361 -9 8 1436 1756 137 86 3 chr6 111557526 111557827 -37959210 + ORR1A3 LTR MaLR 1 326 0 8 1436 351 298 8 16 chr6 111558084 111558210 -37958827 + RLTR42-int LTR ERVK 1198 1322 -4200 8 1436 26 64 0 0 chr6 111558243 111558290 -37958747 + AT_rich Low_complexity Low_complexity 1 47 0 8 1436 423 320 20 7 chr6 111559083 111559231 -37957806 - L2a LINE L2 0 3426 3277 8 1436 1695 45 14 5 chr6 111559395 111559617 -37957420 + L1Md_F3 LINE L1 6359 6582 -2 9 1436 423 0 0 0 chr6 111559621 111559668 -37957369 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1436 701 12 12 0 chr6 111559852 111559938 -37957099 + (TG)n Simple_repeat Simple_repeat 2 88 0 9 1436 518 303 15 0 chr6 111559938 111560070 -37956967 - ID_B1 SINE B4 -5 219 86 9 1436 285 29 0 0 chr6 111560248 111560282 -37956755 + (CCA)n Simple_repeat Simple_repeat 3 36 0 9 1436 1931 120 14 72 chr6 111560331 111560680 -37956357 - ORR1A4 LTR MaLR 0 329 1 9 1436 228 298 57 66 chr6 111561636 111561758 -37955279 - MER58A DNA MER1_type -17 207 87 9 1436 477 0 0 0 chr6 111562145 111562198 -37954839 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1436 650 248 93 6 chr6 111562225 111562387 -37954650 + B4 SINE B4 42 217 -75 9 1436 546 280 28 107 chr6 111562391 111562549 -37954488 + B3 SINE B2 18 165 -51 9 1436 279 0 0 0 chr6 111562549 111562580 -37954457 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1436 546 280 28 107 chr6 111562580 111562637 -37954400 + B3 SINE B2 166 216 0 9 1436 234 259 17 33 chr6 111562664 111562724 -37954313 + RSINE1 SINE B4 107 165 0 1 1436 234 383 21 14 chr6 111563265 111563408 -37953629 + MER5A DNA MER1_type 43 186 -3 1 1436 243 0 0 0 chr6 111564544 111564571 -37952466 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1436 512 126 0 11 chr6 111565220 111565308 -37951729 + (TTA)n Simple_repeat Simple_repeat 1 87 0 1 1436 451 224 0 56 chr6 111565323 111565465 -37951572 - Lx LINE L1 -18 7040 6907 1 1436 3023 248 29 22 chr6 111565613 111566414 -37950623 + RCHARR1 DNA MER1_type 169 974 0 1 1436 769 219 36 31 chr6 111567153 111567346 -37949691 + B3A SINE B2 3 196 -2 1 1436 576 322 93 57 chr6 111567763 111568015 -37949022 + RMER5 LTR ERV1 33 301 -233 1 1436 639 0 0 0 chr6 111568015 111568086 -37948951 + (TTTCC)n Simple_repeat Simple_repeat 5 75 0 1 1436 1448 163 39 7 chr6 111568086 111568370 -37948667 - Lx LINE L1 -19 6635 6343 1 1436 576 322 93 57 chr6 111568370 111568449 -37948588 + RMER5 LTR ERV1 302 376 -158 1 1436 1239 86 0 6 chr6 111569584 111569759 -37947278 + MTA_Mm LTR MaLR 1 174 -222 1 1436 2804 61 41 26 chr6 111569759 111570149 -37946888 - MTA_Mm LTR MaLR 0 396 1 1 1436 7805 83 10 4 chr6 111570152 111571240 -37945797 - MTA_Mm-int LTR MaLR -3 1095 1 1 1436 282 302 66 25 chr6 111571535 111571657 -37945380 - RSINE1 SINE B4 -36 129 3 1 1436 369 330 44 22 chr6 111572537 111572717 -37944320 - MER5A DNA MER1_type -1 188 5 1 1436 402 336 0 17 chr6 111573007 111573125 -37943912 - PB1D10 SINE Alu -1 116 1 1 1436 619 278 266 19 chr6 111573195 111573518 -37943519 + MTD LTR MaLR 5 407 -12 1 1436 308 308 27 36 chr6 111573991 111574102 -37942935 + MTEa LTR MaLR 258 367 -12 1 1436 180 125 0 0 chr6 111574105 111574137 -37942900 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 1 1436 333 281 11 87 chr6 111574364 111574547 -37942490 + L1MCb LINE L1 835 1003 -5042 1 1436 368 297 0 30 chr6 111575021 111575153 -37941884 - L1M5 LINE L1 -2509 3637 3510 1 1436 34 24 0 0 chr6 111575364 111575405 -37941632 + AT_rich Low_complexity Low_complexity 1 41 0 1 1436 206 105 79 0 chr6 111576151 111576189 -37940848 + (TGGG)n Simple_repeat Simple_repeat 1 41 0 1 1436 1148 61 0 7 chr6 111576259 111576408 -37940629 + B1_Mus1 SINE Alu 1 148 0 1 1436 246 128 0 0 chr6 111576408 111576447 -37940590 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1436 401 280 7 81 chr6 111576452 111576588 -37940449 + Lx8 LINE L1 7226 7351 -122 1 1436 498 280 132 13 chr6 111577237 111577396 -37939641 + MER74B LTR ERVL 406 583 -39 1 1436 858 283 51 17 chr6 111577981 111578218 -37938819 + 7SK RNA RNA 1 245 -86 1 1436 395 335 0 84 chr6 111578372 111578538 -37938499 + B3A SINE B2 46 197 -1 1 1436 22 56 0 0 chr6 111579315 111579351 -37937686 + AT_rich Low_complexity Low_complexity 1 36 0 1 1436 1951 216 47 13 chr6 111579394 111579747 -37937290 - Lx9 LINE L1 -262 7382 7020 1 1436 471 35 0 0 chr6 111579747 111579804 -37937233 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 1 1436 1951 216 47 13 chr6 111579804 111579915 -37937122 - Lx9 LINE L1 -625 7019 6902 1 1436 868 214 47 33 chr6 111580032 111580245 -37936792 + B3 SINE B2 1 216 0 1 1436 189 107 0 0 chr6 111581279 111581307 -37935730 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 1 1436 558 307 163 17 chr6 111581407 111581702 -37935335 + RMER15 LTR ERVL 234 571 -4 1 1436 499 314 55 82 chr6 111582266 111582558 -37934479 - B4 SINE B4 -4 288 5 1 1436 863 133 23 6 chr6 111583026 111583200 -37933837 + CT-rich Low_complexity Low_complexity 2 178 0 1 1436 456 243 117 0 chr6 111585635 111585746 -37931291 - B1_Mur1 SINE Alu -1 148 25 1 1436 365 309 63 8 chr6 111585764 111585891 -37931146 - MLT2B2 LTR ERVL -381 134 1 1 1436 396 0 0 0 chr6 111586473 111586517 -37930520 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1 1436 1210 242 108 70 chr6 111586637 111587081 -37929956 - RMER13A LTR ERVK -399 461 1 1 1436 465 356 8 8 chr6 111587203 111587336 -37929701 + RSINE1 SINE B4 11 143 -22 1 1436 527 319 102 18 chr6 111587474 111587806 -37929231 + LTR37A LTR ERV1 18 377 -49 1 1436 370 360 49 18 chr6 111588749 111588913 -37928124 - MER5B DNA MER1_type -6 172 4 1 1436 214 324 153 14 chr6 111588927 111589071 -37927966 - MER5A DNA MER1_type 0 189 26 1 1436 200 61 61 0 chr6 111589141 111589174 -37927863 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1 1436 225 211 0 0 chr6 111589320 111589372 -37927665 + (TATG)n Simple_repeat Simple_repeat 4 55 0 1 1436 497 324 28 37 chr6 111589386 111589601 -37927436 - ID_B1 SINE B4 -11 213 1 1 1436 189 0 0 0 chr6 111590115 111590136 -37926901 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1436 342 115 0 0 chr6 111590615 111590667 -37926370 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1436 234 300 42 14 chr6 111590763 111590905 -37926132 + (TATATG)n Simple_repeat Simple_repeat 6 151 0 1 1436 555 307 178 4 chr6 111590992 111591234 -37925803 - B4A SINE B4 -6 286 3 1 1436 295 381 41 12 chr6 111591239 111591409 -37925628 + MER58B DNA MER1_type 167 341 0 1 1436 194 326 0 0 chr6 111591411 111591460 -37925577 + MER5A DNA MER1_type 8 56 -133 1 1436 2811 111 0 2 chr6 111591524 111591921 -37925116 + MTA_Mm LTR MaLR 1 396 0 1 1436 466 276 33 44 chr6 111592782 111592964 -37924073 - LTR37A LTR ERV1 -19 407 228 1 1436 936 263 0 0 chr6 111592973 111593182 -37923855 + B3 SINE B2 1 209 -7 1 1436 303 217 0 48 chr6 111593580 111593643 -37923394 + HAL1-3A_ME LINE L1 1975 2034 -824 1 1436 485 357 73 15 chr6 111593888 111594147 -37922890 - MER2 DNA MER2_type -31 314 41 1 1436 546 16 0 0 chr6 111594806 111594869 -37922168 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1436 1494 297 23 32 chr6 111595151 111595770 -37921267 - Lx9 LINE L1 -328 7316 6704 1 1436 266 318 0 0 chr6 111595770 111595833 -37921204 - B4 SINE B4 -228 64 2 1 1436 351 254 22 80 chr6 111596913 111597050 -37919987 + RMER15 LTR ERVL 28 156 -419 1 1436 816 297 24 45 chr6 111597055 111597347 -37919690 + RMER15 LTR ERVL 276 561 -14 1 1436 580 286 134 92 chr6 111597534 111597869 -37919168 + MER21B LTR ERV1 175 523 -340 1 1436 483 303 0 47 chr6 111598074 111598223 -37918814 + B3A SINE B2 2 143 -55 1 1436 624 283 47 28 chr6 111598422 111598633 -37918404 + B3 SINE B2 2 216 0 1 1436 640 323 36 0 chr6 111598806 111599001 -37918036 - ID_B1 SINE B4 -21 203 2 1 1436 866 248 21 50 chr6 111599966 111600176 -37916861 + B4A SINE B4 2 212 -80 1 1436 378 0 0 0 chr6 111600176 111600218 -37916819 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1436 866 248 21 50 chr6 111600218 111600287 -37916750 + B4A SINE B4 213 273 -19 1 1436 495 288 113 16 chr6 111600308 111600502 -37916535 + RMER5 LTR ERV1 49 261 -273 1 1436 212 231 0 0 chr6 111601071 111601110 -37915927 + polypyrimidine Low_complexity Low_complexity 2 40 0 1 1436 229 339 0 0 chr6 111601161 111601223 -37915814 - 5S rRNA rRNA -58 63 2 1 1436 27 29 0 0 chr6 111601642 111601676 -37915361 + AT_rich Low_complexity Low_complexity 1 34 0 1 1436 186 266 114 0 chr6 111602328 111602407 -37914630 + MIR SINE MIR 114 201 -61 1 1436 292 240 0 27 chr6 111602604 111602703 -37914334 + B1_Mus2 SINE Alu 41 133 -16 1 1436 1644 239 103 17 chr6 111603831 111604299 -37912738 + RMER5 LTR ERV1 1 508 -26 1 1436 1191 171 23 5 chr6 111604732 111604950 -37912087 + URR1B DNA MER1_type 1 222 -3 1 1436 370 356 68 0 chr6 111605092 111605210 -37911827 - RSINE1 SINE B4 -4 161 36 1 1436 578 246 0 22 chr6 111605210 111605347 -37911690 + B1_Mur1 SINE Alu 1 134 -15 1 1436 259 136 17 17 chr6 111605651 111605711 -37911326 + (TTAGGG)n Simple_repeat Simple_repeat 1 60 0 1 1436 2965 60 3 8 chr6 111606157 111606546 -37910491 - MTA_Mm LTR MaLR -7 389 3 1 1436 709 299 20 10 chr6 111606912 111607115 -37909922 - ID_B1 SINE B4 -1 223 19 1 1436 842 241 19 10 chr6 111607409 111607614 -37909423 + B3 SINE B2 4 210 -6 1 1436 327 267 148 0 chr6 111607912 111608013 -37909024 - MLT1A0 LTR MaLR -42 323 208 1 1436 2251 205 2 2 chr6 111608075 111608485 -37908552 + MTC LTR MaLR 12 421 0 1 1436 566 281 28 17 chr6 111608596 111608777 -37908260 + B3A SINE B2 1 183 -15 1 1436 855 256 10 39 chr6 111609012 111609215 -37907822 - B3A SINE B2 -1 197 1 1 1436 687 296 168 51 chr6 111609355 111609611 -37907426 - B4A SINE B4 -6 286 1 1 1436 30 45 0 0 chr6 111610944 111610988 -37906049 + AT_rich Low_complexity Low_complexity 1 44 0 1 1436 427 284 34 0 chr6 111611166 111611314 -37905723 + Lx8 LINE L1 7015 7167 -306 1 1436 10935 127 25 3 chr6 111611477 111614303 -37902734 + Lx3B LINE L1 3989 6857 -116 1 1436 203 0 37 0 chr6 111614303 111614330 -37902707 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 1 1436 8349 125 31 3 chr6 111614330 111614419 -37902618 + Lx3B LINE L1 6858 6968 -5 1 1436 642 113 0 0 chr6 111614430 111614527 -37902510 + (CATA)n Simple_repeat Simple_repeat 2 98 0 1 1436 489 17 0 0 chr6 111615173 111615231 -37901806 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1436 421 329 131 14 chr6 111615797 111616236 -37900801 + L1M5 LINE L1 5092 5581 -581 1 1436 6714 5 0 1 chr6 111616237 111617040 -37899997 - L1Md_T LINE L1 -1511 4372 3571 1 1436 10220 8 0 0 chr6 111617032 111618238 -37898799 + L1Md_T LINE L1 4381 5586 -297 1 1436 8982 8 0 0 chr6 111618238 111619234 -37897803 + L1Md_T LINE L1 5587 6582 0 1 1436 928 26 0 0 chr6 111619234 111619341 -37897696 + L1Md_T LINE L1 6150 6256 -326 1 1436 2149 111 11 46 chr6 111619341 111619690 -37897347 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1436 5215 72 33 12 chr6 111619696 111620447 -37896590 - IAPEz-int LTR ERVK -6 6475 5709 1 1436 2974 20 0 0 chr6 111620438 111620795 -37896242 - IAPEz-int LTR ERVK -2124 4357 4001 1 1436 355 107 0 0 chr6 111620793 111620849 -37896188 - IAPEz-int LTR ERVK -3707 2774 2719 1 1436 16444 63 32 23 chr6 111620848 111623165 -37893872 - IAPEz-int LTR ERVK -4136 2345 8 1 1436 2149 111 11 46 chr6 111623165 111623514 -37893523 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1436 3012 0 0 0 chr6 111623514 111623846 -37893191 + L1Md_T LINE L1 6251 6582 0 1 1436 243 0 0 0 chr6 111623869 111623896 -37893141 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1436 399 21 0 0 chr6 111624035 111624083 -37892954 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1436 421 329 131 14 chr6 111624649 111625088 -37891949 + L1ME3A LINE L1 5092 5581 -581 2 1436 6714 5 0 1 chr6 111625089 111625892 -37891145 - L1Md_A LINE L1 -1511 4372 3571 2 1436 10220 8 0 0 chr6 111625884 111627090 -37889947 + L1Md_A LINE L1 4381 5586 -297 2 1436 8853 14 0 0 chr6 111627090 111628086 -37888951 + L1Md_A LINE L1 5587 6582 0 2 1436 4539 64 25 15 chr6 111628344 111629007 -37888030 + L1_Mus1 LINE L1 5959 6567 0 2 1436 419 287 8 42 chr6 111629007 111629127 -37887910 + B4A SINE B4 177 292 0 2 1436 1086 232 133 43 chr6 111629167 111629491 -37887546 - MTE2b LTR MaLR -24 355 3 2 1436 312 353 100 36 chr6 111629564 111629893 -37887144 + L1ME3A LINE L1 5795 6144 -29 2 1436 545 290 129 53 chr6 111630578 111630920 -37886117 + RLTR9A LTR ERVK 1 368 0 2 1436 551 263 76 20 chr6 111632967 111633165 -37883872 + B3 SINE B2 1 209 -7 2 1436 280 333 20 0 chr6 111633257 111633359 -37883678 + PB1D10 SINE Alu 1 104 -13 2 1436 186 43 0 0 chr6 111634236 111634259 -37882778 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1436 570 29 0 0 chr6 111634271 111634339 -37882698 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1436 464 289 9 0 chr6 111634383 111634497 -37882540 - PB1D7 SINE Alu 0 120 6 2 1436 383 219 14 0 chr6 111634609 111634682 -37882355 + 5S rRNA rRNA 15 88 -33 2 1436 512 216 208 7 chr6 111634997 111635146 -37881891 + B3A SINE B2 4 182 -16 2 1436 24 0 0 0 chr6 111635347 111635371 -37881666 + AT_rich Low_complexity Low_complexity 1 24 0 2 1436 257 167 19 0 chr6 111635465 111635519 -37881518 + GA-rich Low_complexity Low_complexity 2 56 0 2 1436 1098 135 0 0 chr6 111635520 111635698 -37881339 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 2 1436 737 154 5 5 chr6 111635989 111636185 -37880852 + CT-rich Low_complexity Low_complexity 1 196 0 2 1436 428 0 19 0 chr6 111636185 111636237 -37880800 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1436 361 302 126 51 chr6 111636402 111636657 -37880380 + L1M5 LINE L1 3682 3955 -2191 2 1436 7928 40 1 1 chr6 111636921 111638172 -37878865 - L1Md_F2 LINE L1 0 6582 5332 2 1436 202 386 61 37 chr6 111638613 111638777 -37878260 - MIR3 SINE MIR -1 207 40 2 1436 1430 243 27 0 chr6 111639123 111639419 -37877618 - RMER15 LTR ERVL -40 535 232 2 1436 348 307 60 17 chr6 111639407 111639523 -37877514 - RSINE1 SINE B4 -39 126 6 2 1436 264 377 35 0 chr6 111639960 111640074 -37876963 - B1F2 SINE Alu -10 139 22 2 1436 270 286 121 0 chr6 111640538 111640678 -37876359 - MER113 DNA MER1_type -75 446 290 2 1436 10113 152 9 8 chr6 111640916 111642747 -37874290 + L1_Mm LINE L1 4037 5869 -14 2 1436 4373 116 106 0 chr6 111643157 111643866 -37873171 + Lx LINE L1 5863 6646 -8 2 1436 21 0 0 0 chr6 111643867 111643888 -37873149 + AT_rich Low_complexity Low_complexity 1 21 0 2 1436 1114 203 25 0 chr6 111644207 111644409 -37872628 + B3 SINE B2 3 209 -7 2 1436 227 283 33 0 chr6 111644445 111644505 -37872532 - ID4 SINE ID -20 63 2 2 1436 525 32 0 0 chr6 111644537 111644600 -37872437 + (TATG)n Simple_repeat Simple_repeat 2 64 0 2 1436 455 288 84 28 chr6 111644613 111644756 -37872281 - B3A SINE B2 -47 151 1 2 1436 1321 122 9 0 chr6 111645189 111645410 -37871627 - L1_Mm LINE L1 -541 5342 5120 2 1436 21 0 0 0 chr6 111645580 111645601 -37871436 + AT_rich Low_complexity Low_complexity 1 21 0 2 1436 538 282 8 8 chr6 111645969 111646094 -37870943 + RSINE1 SINE B4 2 126 -39 2 1436 379 35 17 17 chr6 111646131 111646189 -37870848 + (TA)n Simple_repeat Simple_repeat 1 58 0 2 1436 294 29 0 0 chr6 111646299 111646334 -37870703 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1436 351 0 0 0 chr6 111646334 111646372 -37870665 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1436 611 304 52 16 chr6 111646774 111647025 -37870012 - Lx8 LINE L1 -387 7086 6827 2 1436 242 29 29 0 chr6 111647831 111647866 -37869171 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1436 541 320 52 107 chr6 111648077 111648462 -37868575 + MTEa LTR MaLR 3 366 -13 2 1436 610 13 25 0 chr6 111648747 111648826 -37868211 + (TC)n Simple_repeat Simple_repeat 1 81 0 2 1436 333 47 0 0 chr6 111648845 111648888 -37868149 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1436 235 301 0 52 chr6 111648942 111649019 -37868018 + MIRb SINE MIR 118 190 -78 2 1436 798 296 11 19 chr6 111649360 111649625 -37867412 + MTD LTR MaLR 1 263 -156 2 1436 465 259 29 29 chr6 111650147 111650286 -37866751 + MTD LTR MaLR 281 419 0 2 1436 22 35 0 0 chr6 111650667 111650696 -37866341 + AT_rich Low_complexity Low_complexity 1 29 0 2 1436 975 298 48 30 chr6 111650757 111651027 -37866010 + B4A SINE B4 18 292 0 2 1436 351 0 0 0 chr6 111651031 111651070 -37865967 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1436 581 179 79 49 chr6 111651353 111651381 -37865656 + ID_B1 SINE B4 56 176 -48 2 1436 951 71 0 0 chr6 111651381 111651508 -37865529 + B1_Mus1 SINE Alu 1 127 -21 2 1436 188 35 35 0 chr6 111651520 111651549 -37865488 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 1436 1000 66 80 0 chr6 111651624 111651761 -37865276 + B1_Mus1 SINE Alu 1 148 0 2 1436 28 0 0 0 chr6 111651761 111651789 -37865248 + AT_rich Low_complexity Low_complexity 1 28 0 2 1436 670 301 103 5 chr6 111651951 111652135 -37864902 + B3 SINE B2 4 205 -11 2 1436 3928 142 22 92 chr6 111652139 111652941 -37864096 - RMER6A LTR ERVK -10 746 1 2 1436 24 53 0 0 chr6 111652959 111652997 -37864040 + AT_rich Low_complexity Low_complexity 1 38 0 2 1436 2550 86 16 8 chr6 111653244 111653618 -37863419 - L1_Mus3 LINE L1 -4 6634 6258 2 1436 342 67 0 0 chr6 111653693 111653738 -37863299 + (GGA)n Simple_repeat Simple_repeat 3 47 0 2 1436 354 227 30 0 chr6 111653738 111653804 -37863233 - B1F2 SINE Alu -36 113 46 2 1436 400 340 25 57 chr6 111653840 111653936 -37863101 - RSINE1 SINE B4 0 165 71 2 1436 5223 34 0 2 chr6 111653936 111654552 -37862485 - L1Md_T LINE L1 0 6582 5968 2 1436 400 340 25 57 chr6 111654552 111654614 -37862423 - RSINE1 SINE B4 -95 70 12 2 1436 242 186 0 132 chr6 111655344 111655412 -37861625 - MT2A LTR ERVL -470 63 5 2 1436 1193 281 32 10 chr6 111655409 111655718 -37861319 + MTEb LTR MaLR 55 370 -9 2 1436 394 332 109 27 chr6 111655810 111655986 -37861051 - B3A SINE B2 -19 197 18 2 1436 380 284 19 3 chr6 111656913 111657026 -37860011 + PB1D7 SINE Alu 5 119 -1 2 1436 620 324 25 88 chr6 111657332 111657616 -37859421 + B4A SINE B4 2 267 -25 2 1436 320 94 19 0 chr6 111658831 111658884 -37858153 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 2 1436 242 392 0 0 chr6 111658899 111658978 -37858059 + PB1D10 SINE Alu 1 79 -38 2 1436 1346 293 42 26 chr6 111659229 111659597 -37857440 - MTEb LTR MaLR -10 360 1 2 1436 463 266 0 0 chr6 111659877 111659971 -37857066 + PB1D10 SINE Alu 9 102 -15 2 1436 550 166 20 20 chr6 111659971 111660119 -37856918 + GA-rich Low_complexity Low_complexity 4 151 0 2 1436 684 0 0 0 chr6 111661117 111661193 -37855844 + (GA)n Simple_repeat Simple_repeat 2 77 0 2 1436 5955 203 43 43 chr6 111661232 111661333 -37855704 - Lx5 LINE L1 -3 7047 6924 2 1436 3216 51 2 8 chr6 111661333 111661731 -37855306 + MTA_Mm LTR MaLR 1 396 0 2 1436 7114 88 21 71 chr6 111661731 111662887 -37854150 + MTA_Mm-int LTR MaLR 1 1098 0 2 1436 3222 46 8 8 chr6 111662887 111663283 -37853754 + MTA_Mm LTR MaLR 1 396 0 2 1436 5955 203 43 43 chr6 111663283 111664634 -37852403 - Lx5 LINE L1 -127 6923 5595 2 1436 323 67 0 0 chr6 111664641 111664686 -37852351 + Lx LINE L1 6415 6459 -195 2 1436 3147 107 8 16 chr6 111664687 111665183 -37851854 - L1_Mm LINE L1 -92 5791 5300 2 1436 505 168 0 0 chr6 111665182 111665277 -37851760 - Lx5 LINE L1 -528 5349 5255 2 1436 243 143 0 0 chr6 111665275 111665317 -37851720 + L1_Mur1 LINE L1 5202 5243 -643 2 1436 333 0 0 0 chr6 111665440 111665477 -37851560 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1436 372 266 160 8 chr6 111665478 111665603 -37851434 - RSINE1 SINE B4 -19 146 3 2 1436 187 364 114 0 chr6 111665704 111665792 -37851245 + L2a LINE L2 3312 3409 -17 2 1436 486 197 0 0 chr6 111665864 111665986 -37851051 + (TG)n Simple_repeat Simple_repeat 2 123 0 2 1436 369 0 0 0 chr6 111666294 111666335 -37850702 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1436 257 305 11 0 chr6 111666336 111666431 -37850606 + L1MA9 LINE L1 6168 6263 -49 2 1436 26 98 0 0 chr6 111666436 111666518 -37850519 + AT_rich Low_complexity Low_complexity 1 82 0 2 1436 333 0 0 0 chr6 111667315 111667352 -37849685 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1436 1714 235 56 10 chr6 111667821 111668219 -37848818 - MTD LTR MaLR -13 406 1 2 1436 597 314 35 46 chr6 111668271 111668555 -37848482 - MLT1B LTR MaLR -2 388 108 2 1436 270 116 0 0 chr6 111669432 111669475 -37847562 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1436 914 273 47 8 chr6 111669476 111669731 -37847306 - B4A SINE B4 -19 273 9 2 1436 1166 91 6 6 chr6 111669731 111669908 -37847129 + L1_Mus2 LINE L1 6390 6566 0 2 1436 652 280 29 10 chr6 111671089 111671298 -37845739 + B3 SINE B2 3 215 -1 2 1436 705 56 0 0 chr6 111672300 111672390 -37844647 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 1436 240 288 108 14 chr6 111672837 111672911 -37844126 - B4 SINE B4 -11 281 201 2 1437 304 287 45 18 chr6 111673538 111673648 -37843389 + B4 SINE B4 26 138 -154 2 1437 396 143 0 0 chr6 111674320 111674390 -37842647 + (TCC)n Simple_repeat Simple_repeat 3 72 0 2 1437 438 20 0 0 chr6 111674408 111674459 -37842578 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1437 2321 106 53 3 chr6 111674459 111674799 -37842238 + RLTR10D LTR ERVK 1 357 -2 2 1437 500 0 17 0 chr6 111674800 111674860 -37842177 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1437 4517 8 0 0 chr6 111676777 111677273 -37839764 + L1Md_T LINE L1 6075 6570 -12 2 1437 207 0 0 0 chr6 111678603 111678626 -37838411 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1437 247 279 76 0 chr6 111678661 111678740 -37838297 - MER21B LTR ERV1 -778 85 1 3 1437 570 332 20 5 chr6 111678894 111679091 -37837946 + B3 SINE B2 1 200 -16 3 1437 300 53 0 0 chr6 111679378 111679416 -37837621 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1437 309 305 62 49 chr6 111679578 111679802 -37837235 + L1MA5 LINE L1 5897 6123 -177 3 1437 360 0 0 0 chr6 111680046 111680086 -37836951 + (CATA)n Simple_repeat Simple_repeat 4 43 0 3 1437 351 0 0 0 chr6 111681167 111681206 -37835831 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1437 1062 279 8 4 chr6 111681473 111681714 -37835323 + MTE2b LTR MaLR 1 242 -137 3 1437 1275 152 190 63 chr6 111681925 111682132 -37834905 + RMER17C LTR ERVK 1 187 -223 3 1437 663 13 0 0 chr6 111682132 111682208 -37834829 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1437 1275 152 190 63 chr6 111682208 111682364 -37834673 + RMER17C LTR ERVK 188 410 0 3 1437 553 213 66 0 chr6 111682520 111682656 -37834381 + MTE2b LTR MaLR 235 379 0 3 1437 2146 229 92 31 chr6 111682804 111683349 -37833688 - RLTR20A2 LTR ERVK 0 578 1 3 1437 730 175 81 6 chr6 111683486 111683658 -37833379 + Lx5 LINE L1 6866 7050 0 3 1437 350 287 65 0 chr6 111683690 111683798 -37833239 + PB1 SINE Alu 8 122 -5 3 1437 1372 226 35 116 chr6 111683829 111684285 -37832752 - RLTR23 LTR ERV1 -2 428 10 3 1437 1257 282 183 12 chr6 111684644 111685352 -37831685 - RCHARR1 DNA MER1_type 0 974 146 3 1437 510 292 114 36 chr6 111685689 111685856 -37831181 + B3A SINE B2 3 182 -13 3 1437 677 207 21 35 chr6 111685856 111686001 -37831036 + B1_Mur2 SINE Alu 7 149 0 3 1437 384 254 86 26 chr6 111686027 111686144 -37830893 + B1F1 SINE Alu 26 149 0 3 1437 575 265 35 8 chr6 111686167 111686312 -37830725 + B3A SINE B2 1 151 -47 3 1437 315 0 0 0 chr6 111686314 111686349 -37830688 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1437 294 404 29 0 chr6 111687205 111687413 -37829624 - RMER15 LTR ERVL -5 570 357 3 1437 258 238 34 56 chr6 111688321 111688410 -37828627 + MTEb LTR MaLR 278 364 -15 3 1437 767 263 0 0 chr6 111689589 111689741 -37827296 - B3 SINE B2 -63 153 2 3 1437 372 279 211 8 chr6 111689799 111689922 -37827115 - B3A SINE B2 -48 150 3 3 1437 660 207 281 59 chr6 111690228 111690386 -37826651 - ORR1E LTR MaLR -4 355 175 3 1437 621 72 0 0 chr6 111690386 111690469 -37826568 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 1437 660 207 281 59 chr6 111690469 111690598 -37826439 - ORR1E LTR MaLR -185 174 4 3 1437 358 311 44 22 chr6 111690978 111691113 -37825924 + B1F SINE Alu 12 149 0 3 1437 24 0 0 0 chr6 111692317 111692341 -37824696 + AT_rich Low_complexity Low_complexity 1 24 0 3 1437 475 264 169 6 chr6 111692401 111692561 -37824476 + B3A SINE B2 2 187 -11 3 1437 3644 206 57 4 chr6 111693508 111694245 -37822792 + Lx5 LINE L1 6228 7003 -47 3 1437 232 324 37 37 chr6 111694390 111694499 -37822538 - MIRc SINE MIR -138 130 22 3 1437 626 378 83 78 chr6 111695589 111696324 -37820713 + MER21B LTR ERV1 1 739 -124 3 1437 380 304 40 30 chr6 111696595 111696795 -37820242 + RLTR42-int LTR ERVK 1198 1399 -4123 3 1437 1506 82 14 5 chr6 111696924 111697146 -37819891 - L1_Mus3 LINE L1 -2 6636 6413 3 1437 531 272 160 47 chr6 111698670 111698882 -37818155 + Lx8 LINE L1 7104 7339 -134 3 1437 3645 102 36 9 chr6 111698890 111699443 -37817594 + Lx3A LINE L1 6414 6981 0 3 1437 538 268 197 22 chr6 111699721 111699904 -37817133 - MER70B LTR ERVL -363 215 1 3 1437 353 284 119 52 chr6 111700197 111700331 -37816706 - RSINE1 SINE B4 -22 143 1 3 1437 244 250 32 21 chr6 111701285 111701379 -37815658 + Lx8 LINE L1 7379 7473 0 3 1437 245 347 10 10 chr6 111701679 111701778 -37815259 + GA-rich Low_complexity Low_complexity 3 101 0 3 1437 251 54 0 26 chr6 111701796 111701834 -37815203 + (TTCTG)n Simple_repeat Simple_repeat 4 40 0 3 1437 1254 96 0 0 chr6 111702286 111702463 -37814574 - L1_Mus3 LINE L1 -218 6420 6244 3 1437 1226 77 16 5 chr6 111702463 111702647 -37814390 + L1_Mus3 LINE L1 6452 6637 -1 3 1437 574 274 60 75 chr6 111702830 111703161 -37813876 + LTR37B LTR ERV1 142 467 -1 3 1437 249 271 0 33 chr6 111703275 111703336 -37813701 - B4A SINE B4 -15 277 219 3 1437 467 297 266 9 chr6 111703422 111703636 -37813401 - B4A SINE B4 -23 269 1 3 1437 495 0 0 0 chr6 111704008 111704063 -37812974 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1437 1921 258 95 72 chr6 111705787 111706677 -37810360 - RMER17B LTR ERVK -46 912 1 3 1437 276 30 0 0 chr6 111709413 111709446 -37807591 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1437 804 50 0 0 chr6 111709776 111709877 -37807160 + (TTTTC)n Simple_repeat Simple_repeat 3 103 0 3 1437 328 316 122 0 chr6 111709894 111710033 -37807004 - MLT1D LTR MaLR -348 157 2 3 1437 1148 279 48 42 chr6 111710404 111710741 -37806296 + ORR1E LTR MaLR 21 359 0 3 1437 936 217 68 18 chr6 111712174 111712201 -37804836 + Lx8 LINE L1 6916 6942 -531 3 1437 509 15 0 42 chr6 111712201 111712272 -37804765 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1437 936 217 68 18 chr6 111712272 111712465 -37804572 + Lx8 LINE L1 6943 7146 -327 3 1437 232 290 22 105 chr6 111712468 111712649 -37804388 + Lx8 LINE L1 7306 7471 -2 3 1437 22 0 0 0 chr6 111712661 111712683 -37804354 + AT_rich Low_complexity Low_complexity 1 22 0 3 1437 630 375 129 53 chr6 111712734 111713240 -37803797 + MLT1G LTR MaLR 11 595 0 3 1437 320 343 36 10 chr6 111713691 111713848 -37803189 + MTEb LTR MaLR 203 375 -4 3 1437 295 306 30 94 chr6 111714851 111715085 -37801952 + MTEb LTR MaLR 142 377 -2 3 1437 271 325 84 42 chr6 111715449 111715616 -37801421 + B3A SINE B2 25 198 0 3 1437 436 328 61 0 chr6 111715697 111715828 -37801209 + RSINE1 SINE B4 14 152 -13 3 1437 44 20 0 0 chr6 111715863 111715914 -37801123 + AT_rich Low_complexity Low_complexity 1 51 0 3 1437 804 194 103 0 chr6 111716655 111716830 -37800207 - URR1A DNA MER1_type -1 225 33 3 1437 724 271 15 5 chr6 111716987 111717187 -37799850 - B3 SINE B2 -12 204 3 3 1437 1481 91 0 0 chr6 111717719 111717918 -37799119 + L1_Mus2 LINE L1 6368 6566 0 3 1437 3976 51 16 2 chr6 111718213 111718728 -37798309 + L1Md_F2 LINE L1 5942 6463 -119 3 1437 237 152 22 0 chr6 111719913 111719959 -37797078 + (TTG)n Simple_repeat Simple_repeat 2 48 0 3 1437 391 267 12 0 chr6 111721836 111721922 -37795115 + MER58B DNA MER1_type 255 341 0 3 1437 530 280 7 7 chr6 111722072 111722216 -37794821 - B1F SINE Alu -3 146 3 3 1437 378 0 0 0 chr6 111723404 111723446 -37793591 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1437 292 226 36 0 chr6 111723565 111723649 -37793388 + Lx7 LINE L1 7610 7696 0 3 1437 4457 221 77 54 chr6 111723703 111725050 -37791987 + RLTR22_Mur LTR ERVK 1 1378 -470 3 1437 556 324 0 0 chr6 111725050 111725189 -37791848 - Lx7 LINE L1 -710 6986 6848 3 1437 1695 291 24 63 chr6 111725281 111725832 -37791205 - Lx7 LINE L1 -827 6869 6341 3 1437 647 229 129 0 chr6 111726220 111726390 -37790647 - ORR1E LTR MaLR -167 192 1 3 1437 262 309 0 0 chr6 111726440 111726521 -37790516 + BC1_Mm scRNA scRNA 15 95 -57 3 1437 1108 75 0 33 chr6 111727210 111727361 -37789676 + B1_Mus2 SINE Alu 2 147 0 3 1437 198 0 0 0 chr6 111727361 111727383 -37789654 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1437 1323 48 0 0 chr6 111727745 111727892 -37789145 + B1_Mus1 SINE Alu 2 148 0 3 1437 2122 201 39 7 chr6 111728704 111729110 -37787927 - MTC LTR MaLR -1 420 2 3 1437 446 279 168 7 chr6 111729140 111729295 -37787742 + B3A SINE B2 1 180 -18 3 1437 366 277 30 128 chr6 111729967 111730001 -37787036 - B2_Mm1t SINE B2 -9 184 153 3 1437 216 0 0 0 chr6 111730001 111730025 -37787012 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1437 738 251 27 30 chr6 111730025 111730193 -37786844 - B3A SINE B2 -44 154 2 3 1437 234 0 0 0 chr6 111730210 111730236 -37786801 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1437 343 291 0 0 chr6 111731611 111731690 -37785347 - ID4 SINE ID -3 80 2 3 1437 483 269 261 58 chr6 111731915 111732175 -37784862 + MTEb LTR MaLR 54 366 -13 3 1437 446 351 55 42 chr6 111732541 111732758 -37784279 - MLT1A LTR MaLR -129 245 26 3 1437 256 282 14 0 chr6 111733012 111733083 -37783954 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 3 1437 996 297 26 11 chr6 111733086 111733355 -37783682 - B4A SINE B4 -17 275 3 3 1437 696 56 0 0 chr6 111733460 111733549 -37783488 + (TA)n Simple_repeat Simple_repeat 1 89 0 3 1437 225 0 0 0 chr6 111733549 111733573 -37783464 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1437 359 304 32 57 chr6 111734101 111734258 -37782779 + RSINE1 SINE B4 4 156 -9 3 1437 681 169 0 0 chr6 111735856 111735992 -37781045 + CT-rich Low_complexity Low_complexity 1 136 0 3 1437 225 292 14 14 chr6 111735996 111736069 -37780968 + C-rich Low_complexity Low_complexity 5 77 0 3 1437 887 294 5 9 chr6 111736172 111736388 -37780649 - B4 SINE B4 -76 216 2 3 1437 390 125 0 0 chr6 111737063 111737143 -37779894 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 1437 384 244 252 30 chr6 111737162 111737297 -37779740 + MTEb LTR MaLR 214 378 -1 3 1437 709 299 136 23 chr6 111737297 111737561 -37779476 - MTEb LTR MaLR -36 343 50 3 1437 14166 53 0 2 chr6 111737875 111740324 -37776713 - L1Md_F2 LINE L1 -1 6581 4138 3 1437 509 337 40 46 chr6 111740324 111740550 -37776487 + MTD LTR MaLR 87 301 -106 3 1437 4386 136 23 2 chr6 111741040 111741682 -37775355 - Lx2 LINE L1 0 6997 6342 3 1437 5437 78 35 16 chr6 111741684 111742473 -37774564 - RLTR13C2 LTR ERVK 0 1023 1 3 1437 2140 148 14 3 chr6 111742474 111742833 -37774204 - Lx2 LINE L1 -654 6343 5981 3 1437 4307 172 1 91 chr6 111742831 111743789 -37773248 + Lx LINE L1 4499 5370 -513 3 1437 203 281 88 0 chr6 111744160 111744217 -37772820 + MIRb SINE MIR 22 83 -185 3 1437 3319 107 12 1 chr6 111744415 111745003 -37772034 + Lx LINE L1 5344 5937 -717 3 1437 1041 279 47 101 chr6 111745721 111746147 -37770890 - MTD LTR MaLR -4 415 13 4 1437 898 291 61 3 chr6 111746209 111746502 -37770535 - Lx8 LINE L1 -293 7180 6871 4 1437 1129 191 0 5 chr6 111747877 111748082 -37768955 - URR1B DNA MER1_type 0 225 22 4 1437 361 330 0 25 chr6 111748682 111748800 -37768237 - MTEa LTR MaLR 0 379 265 4 1437 366 261 0 0 chr6 111749295 111749383 -37767654 + MTEa LTR MaLR 288 375 -4 4 1437 251 322 170 76 chr6 111749400 111749770 -37767267 + LTR16C LTR ERVL 19 423 -66 4 1437 1299 263 53 30 chr6 111749822 111750218 -37766819 - MTD LTR MaLR -12 407 3 4 1437 405 298 90 48 chr6 111750477 111750707 -37766330 + MIRb SINE MIR 20 260 -2 4 1437 213 264 30 99 chr6 111751362 111751463 -37765574 + L2c LINE L2 3043 3136 -251 4 1437 408 118 0 0 chr6 111752815 111752883 -37764154 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1437 1901 141 30 233 chr6 111752965 111753540 -37763497 + RMER6B LTR ERVK 2 459 -2 4 1437 1209 100 0 3 chr6 111753712 111754072 -37762965 + (TCC)n Simple_repeat Simple_repeat 1 358 0 4 1437 401 93 27 0 chr6 111754084 111754159 -37762878 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 4 1437 492 18 0 0 chr6 111754160 111754217 -37762820 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1437 647 338 91 4 chr6 111754225 111754457 -37762580 - B4A SINE B4 -38 254 3 4 1437 8287 94 17 13 chr6 111754748 111755878 -37761159 - Lx LINE L1 -7 6647 5517 4 1437 3430 53 5 2 chr6 111755878 111756273 -37760764 + MTA_Mm LTR MaLR 1 396 0 4 1437 8287 166 4 6 chr6 111756273 111757304 -37759733 - Lx LINE L1 -367 5516 4483 4 1437 350 100 0 0 chr6 111757304 111757354 -37759683 + L1_Mur1 LINE L1 4297 4346 -1540 4 1437 898 141 28 7 chr6 111757362 111757505 -37759532 + B1_Mm SINE Alu 1 146 -1 4 1437 306 50 0 0 chr6 111757505 111757545 -37759492 + (GAA)n Simple_repeat Simple_repeat 1 40 0 4 1437 922 148 34 17 chr6 111757545 111757565 -37759472 + L1_Mur2 LINE L1 4313 4332 -1551 4 1437 1240 72 0 16 chr6 111757565 111757748 -37759289 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 1437 1008 109 45 0 chr6 111757748 111757906 -37759131 + L1_Mur2 LINE L1 4326 4494 -1389 4 1437 1138 261 112 22 chr6 111757974 111758295 -37758742 + ORR1D2 LTR MaLR 20 369 -1 4 1437 337 274 70 9 chr6 111759567 111759681 -37757356 - B3A SINE B2 -5 211 91 4 1437 662 171 6 152 chr6 111759702 111759723 -37757314 - B1F2 SINE Alu 0 149 139 4 1437 702 0 0 0 chr6 111759723 111759801 -37757236 + (TTTC)n Simple_repeat Simple_repeat 4 81 0 4 1437 662 171 6 152 chr6 111759801 111759944 -37757093 - B1F2 SINE Alu -11 138 9 4 1437 314 294 19 161 chr6 111759802 111759964 -37757073 - B4A SINE B4 -76 216 78 4 1437 22 35 0 0 chr6 111760281 111760310 -37756727 + AT_rich Low_complexity Low_complexity 1 29 0 4 1437 3801 107 6 2 chr6 111760310 111760817 -37756220 - Lx LINE L1 -7 6647 6139 4 1437 302 43 43 0 chr6 111761079 111761126 -37755911 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 4 1437 606 287 0 63 chr6 111761692 111761867 -37755170 + RSINE1 SINE B4 2 165 0 4 1437 348 214 76 19 chr6 111761941 111762046 -37754991 - ORR1E LTR MaLR 0 379 269 4 1437 3433 100 34 2 chr6 111762046 111762545 -37754492 - L1_Mur1 LINE L1 -3354 2532 2018 4 1437 1654 104 80 4 chr6 111762545 111762796 -37754241 + Lx3_Mus LINE L1 6740 7009 0 4 1437 1002 299 36 23 chr6 111762800 111763101 -37753936 - ORR1E LTR MaLR -52 307 3 4 1437 1206 292 64 21 chr6 111763514 111763888 -37753149 - MTD LTR MaLR 0 419 30 4 1437 3046 48 40 3 chr6 111765925 111766277 -37750760 - RLTR10B2 LTR ERVK 0 365 1 4 1437 4316 141 15 3 chr6 111766277 111766955 -37750082 - IAPEY3-int LTR ERVK 0 7680 6995 4 1437 1600 87 100 0 chr6 111766959 111767188 -37749849 - IAP-d-int LTR ERVK -1287 5255 5004 4 1437 535 300 41 37 chr6 111767200 111767480 -37749557 - IAP-d-int LTR ERVK -5479 1063 822 4 1437 2956 35 3 0 chr6 111767607 111767947 -37749090 - RLTR10-int LTR ERVK -995 992 652 4 1437 347 89 0 0 chr6 111767950 111767995 -37749042 - RLTR10-int LTR ERVK -6405 137 93 4 1437 666 84 71 12 chr6 111767999 111768167 -37748870 + CT-rich Low_complexity Low_complexity 3 180 0 4 1437 367 158 0 0 chr6 111768242 111768299 -37748738 - MMERVK10C-int LTR ERVK -7300 281 225 4 1437 277 178 0 0 chr6 111768299 111768344 -37748693 - RLTR27 LTR ERVK -34 275 231 4 1437 1353 73 6 6 chr6 111768344 111768524 -37748513 - MMERVK10C-int LTR ERVK -7401 180 1 4 1437 3031 40 49 0 chr6 111768524 111768872 -37748165 - RLTR10B2 LTR ERVK 0 365 1 4 1437 291 54 0 0 chr6 111769427 111769464 -37747573 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1437 710 285 0 0 chr6 111769539 111769690 -37747347 + RSINE1 SINE B4 3 153 -12 4 1437 21 0 0 0 chr6 111769704 111769725 -37747312 + AT_rich Low_complexity Low_complexity 1 21 0 4 1437 204 40 0 0 chr6 111770053 111770078 -37746959 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1437 441 0 0 0 chr6 111770078 111770126 -37746911 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1437 215 339 151 16 chr6 111771610 111771736 -37745301 - MER5A DNA MER1_type -46 143 1 4 1437 346 296 75 80 chr6 111773505 111773692 -37743345 - MER2 DNA MER2_type -3 342 157 4 1437 339 304 51 25 chr6 111775574 111775688 -37741349 + MTD LTR MaLR 69 185 -234 4 1437 766 244 77 99 chr6 111775688 111776135 -37740902 + RMER2 LTR ERV1 1 539 -28 4 1437 305 282 108 25 chr6 111776270 111776390 -37740647 + MTD LTR MaLR 244 373 -46 4 1437 1745 204 16 67 chr6 111776382 111776618 -37740419 - ORR1D1 LTR MaLR -6 368 146 4 1437 2492 195 52 48 chr6 111776618 111777200 -37739837 + RLTR31A_Mm LTR ERVK 1 584 0 4 1437 1745 204 16 67 chr6 111777200 111777351 -37739686 - ORR1D1 LTR MaLR -229 145 1 4 1437 674 274 183 49 chr6 111777728 111778259 -37738778 + L1MA5 LINE L1 5676 6277 -23 4 1437 991 306 22 11 chr6 111779561 111779835 -37737202 + B4A SINE B4 2 278 -14 4 1437 348 64 0 0 chr6 111779880 111779927 -37737110 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1437 1742 287 23 25 chr6 111780411 111780894 -37736143 - RMER15 LTR ERVL 0 575 94 4 1437 229 277 188 21 chr6 111781912 111782008 -37735029 - MIR SINE MIR -70 192 81 4 1437 1456 78 0 10 chr6 111782426 111782621 -37734416 + B2_Mm2 SINE B2 2 194 -1 4 1437 249 162 0 0 chr6 111782967 111783004 -37734033 + ID SINE ID 5 41 -183 4 1437 234 0 0 0 chr6 111783097 111783123 -37733914 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1437 369 0 0 0 chr6 111783123 111783164 -37733873 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1437 671 290 5 35 chr6 111783202 111783402 -37733635 - B3A SINE B2 -1 197 4 4 1437 1388 255 66 5 chr6 111783610 111784004 -37733033 + MTD LTR MaLR 1 418 -1 4 1437 196 264 0 36 chr6 111784971 111785026 -37732011 - L2c LINE L2 -219 3168 3116 4 1437 7857 26 1 0 chr6 111785586 111786548 -37730489 - L1Md_A LINE L1 0 6582 5620 4 1437 978 279 91 21 chr6 111786985 111787315 -37729722 - ORR1E LTR MaLR -6 353 1 4 1437 304 346 84 42 chr6 111787634 111787848 -37729189 - L1ME3B LINE L1 -124 6116 5894 4 1437 670 314 47 9 chr6 111788028 111788243 -37728794 - MER58A DNA MER1_type 0 224 2 4 1437 180 240 39 20 chr6 111788576 111788627 -37728410 + MIR SINE MIR 102 153 -55 4 1437 1233 319 41 30 chr6 111788740 111789276 -37727761 + Lx7 LINE L1 6772 7313 -383 4 1437 320 0 25 0 chr6 111789283 111789323 -37727714 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1437 378 0 0 0 chr6 111789323 111789364 -37727673 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1437 225 227 66 13 chr6 111789390 111789466 -37727571 + Lx8 LINE L1 7388 7467 -6 4 1437 312 27 0 0 chr6 111789874 111789911 -37727126 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1437 376 253 13 0 chr6 111789953 111790028 -37727009 + ID4 SINE ID 8 83 0 4 1437 245 177 12 37 chr6 111790353 111790435 -37726602 + GA-rich Low_complexity Low_complexity 2 81 0 4 1437 726 251 176 19 chr6 111791326 111791601 -37725436 + MTC LTR MaLR 66 387 -32 4 1437 384 312 0 148 chr6 111792920 111793013 -37724024 + B4A SINE B4 1 82 -210 4 1437 1251 17 35 0 chr6 111793013 111793187 -37723850 + (CATAC)n Simple_repeat Simple_repeat 1 180 0 4 1437 384 312 0 148 chr6 111793187 111793236 -37723801 + B4A SINE B4 83 118 -174 4 1437 415 364 46 67 chr6 111793236 111793519 -37723518 + B4A SINE B4 2 278 -14 4 1437 360 0 0 0 chr6 111793523 111793563 -37723474 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1437 240 35 0 0 chr6 111794146 111794175 -37722862 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1437 1637 188 146 53 chr6 111795121 111795497 -37721540 + MTD LTR MaLR 1 411 -8 4 1437 580 363 58 29 chr6 111795808 111796049 -37720988 + B4A SINE B4 43 290 -2 4 1437 500 239 0 0 chr6 111796207 111796295 -37720742 - B1_Mus2 SINE Alu -54 93 6 4 1437 306 284 52 130 chr6 111796213 111796367 -37720670 - B4 SINE B4 -114 178 37 4 1437 1701 186 49 18 chr6 111796367 111796843 -37720194 + Lx6 LINE L1 5474 5965 -1495 4 1437 902 70 0 0 chr6 111796863 111796978 -37720059 + MTB_Mm LTR MaLR 6 120 -287 4 1437 675 282 6 0 chr6 111796996 111797166 -37719871 - Lx6 LINE L1 -734 6726 6556 4 1437 2114 118 3 9 chr6 111797166 111797483 -37719554 + MTB LTR MaLR 86 400 0 4 1437 3026 285 34 7 chr6 111797487 111798409 -37718628 + Lx6 LINE L1 5973 6893 -567 4 1437 550 169 0 17 chr6 111798425 111798545 -37718492 + GA-rich Low_complexity Low_complexity 2 119 0 4 1437 353 275 126 23 chr6 111798545 111798720 -37718317 + Lx6 LINE L1 6883 7075 -385 4 1437 240 295 89 44 chr6 111798719 111798854 -37718183 + L1_Rod LINE L1 5451 5591 -256 4 1437 360 301 35 146 chr6 111799018 111799162 -37717875 - MLT1F2 LTR MaLR -176 384 257 4 1437 246 125 0 0 chr6 111799226 111799266 -37717771 - MT2A LTR ERVL 0 533 494 4 1437 357 202 0 0 chr6 111799270 111799282 -37717755 + (TATATG)n Simple_repeat Simple_repeat 4 15 0 4 1437 405 102 0 0 chr6 111799282 111799341 -37717696 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 1437 357 202 0 0 chr6 111799341 111799412 -37717625 + (TATATG)n Simple_repeat Simple_repeat 5 75 0 4 1437 1156 281 89 20 chr6 111799634 111800026 -37717011 + MTD LTR MaLR 1 419 0 4 1437 369 0 0 0 chr6 111800959 111801000 -37716037 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1437 224 368 58 13 chr6 111801493 111801647 -37715390 + MIR SINE MIR 2 162 -100 4 1437 713 252 6 19 chr6 111802402 111802560 -37714477 + B4A SINE B4 137 292 0 5 1437 292 307 11 0 chr6 111803011 111803099 -37713938 + (CA)n Simple_repeat Simple_repeat 1 89 0 5 1437 444 217 0 33 chr6 111803099 111803280 -37713757 + (CATA)n Simple_repeat Simple_repeat 4 178 0 5 1437 396 0 0 0 chr6 111803982 111804026 -37713011 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1437 324 0 0 0 chr6 111804026 111804062 -37712975 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 179 290 293 99 57 chr6 111804358 111804550 -37712487 - RMER20B LTR ERVK -391 236 37 5 1438 259 241 127 0 chr6 111805302 111805381 -37711656 + B4 SINE B4 1 89 -203 5 1438 303 322 11 22 chr6 111805411 111805592 -37711445 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 1438 208 237 0 17 chr6 111805635 111805695 -37711342 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1438 214 380 6 0 chr6 111805770 111805941 -37711096 + (CATA)n Simple_repeat Simple_repeat 2 173 0 5 1438 269 280 0 0 chr6 111805833 111805908 -37711129 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 1438 229 301 14 14 chr6 111806796 111806870 -37710167 + ID SINE ID 2 75 -149 5 1438 495 60 0 0 chr6 111806988 111807055 -37709982 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1438 241 371 0 0 chr6 111807283 111807353 -37709684 + ID4_ SINE ID 4 73 -10 5 1438 597 324 76 38 chr6 111807895 111808158 -37708879 + B4 SINE B4 2 274 -18 5 1438 435 19 0 0 chr6 111808172 111808224 -37708813 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1438 443 48 0 16 chr6 111808803 111808866 -37708171 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1438 210 328 0 0 chr6 111808875 111808939 -37708098 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 5 1438 581 296 30 70 chr6 111808946 111809146 -37707891 - B4A SINE B4 -19 273 82 5 1438 2679 45 3 0 chr6 111809163 111809498 -37707539 - ORR1A1 LTR MaLR -8 338 3 5 1438 873 221 49 29 chr6 111809708 111809913 -37707124 + B3 SINE B2 2 210 -6 5 1438 3224 11 5 0 chr6 111810169 111810540 -37706497 - L1Md_A LINE L1 0 6582 6210 5 1438 189 0 0 0 chr6 111810730 111810751 -37706286 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1438 5727 60 12 7 chr6 111810787 111811562 -37705475 - L1Md_F2 LINE L1 0 6582 5812 5 1438 21 0 0 0 chr6 111812142 111812163 -37704874 + AT_rich Low_complexity Low_complexity 1 21 0 5 1438 284 317 47 45 chr6 111812220 111812403 -37704634 - MIRb SINE MIR -43 225 32 5 1438 198 0 0 0 chr6 111813146 111813168 -37703869 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1438 228 111 0 0 chr6 111813219 111813255 -37703782 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 5 1438 360 198 221 0 chr6 111813268 111813354 -37703683 + ORR1B1 LTR MaLR 1 105 -289 5 1438 2071 239 93 33 chr6 111813354 111813937 -37703100 + RLTR17 LTR ERVK 1 618 -74 5 1438 278 185 46 0 chr6 111813934 111813952 -37703085 + ORR1B2 LTR MaLR 28 46 -283 5 1438 1555 67 43 0 chr6 111813952 111814160 -37702877 - L1_Mus1 LINE L1 -1 6566 6350 5 1438 412 191 0 0 chr6 111814160 111814228 -37702809 + ORR1B2 LTR MaLR 80 147 -220 5 1438 289 315 117 0 chr6 111815008 111815119 -37701918 + MT2A LTR ERVL 400 523 -10 5 1438 679 234 68 107 chr6 111815499 111815705 -37701332 + B3A SINE B2 1 198 0 5 1438 261 282 27 18 chr6 111817038 111817150 -37699887 + L1MC1 LINE L1 5996 6108 -225 5 1438 447 335 16 48 chr6 111818203 111818391 -37698646 + B3A SINE B2 2 183 -15 5 1438 300 271 118 8 chr6 111820504 111820623 -37696414 - MER113 DNA MER1_type -241 280 149 5 1438 2741 82 26 5 chr6 111820672 111821052 -37695985 + L1Md_F2 LINE L1 6183 6570 -12 5 1438 353 273 249 0 chr6 111821259 111821468 -37695569 - MER2 DNA MER2_type -54 291 31 5 1438 1115 259 74 48 chr6 111821489 111821842 -37695195 + ORR1D2 LTR MaLR 9 370 0 5 1438 277 312 0 24 chr6 111823159 111823241 -37693796 + MIR SINE MIR 41 120 -142 5 1438 235 184 103 26 chr6 111823359 111823437 -37693600 - MTEa LTR MaLR -24 355 272 5 1438 347 310 90 30 chr6 111824208 111824441 -37692596 + LTR37A LTR ERV1 60 306 -120 5 1438 921 295 190 24 chr6 111826037 111826447 -37690590 - MLT1A1-int LTR MaLR 0 1735 1258 5 1438 291 54 0 0 chr6 111826654 111826691 -37690346 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1438 405 0 0 0 chr6 111826735 111826780 -37690257 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 5 1438 396 236 287 49 chr6 111826792 111827015 -37690022 + B4 SINE B4 2 277 -15 5 1438 234 128 0 0 chr6 111827035 111827074 -37689963 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1438 575 283 84 32 chr6 111827358 111827582 -37689455 - MTE2a LTR MaLR -14 405 177 5 1438 942 309 54 88 chr6 111827573 111827849 -37689188 - MLT1A1-int LTR MaLR -1185 550 274 5 1438 359 316 45 13 chr6 111827849 111828006 -37689031 + RSINE1 SINE B4 3 164 -1 5 1438 942 309 54 88 chr6 111828006 111828025 -37689012 - MLT1A1-int LTR MaLR -1462 273 263 5 1438 783 105 0 0 chr6 111828025 111828149 -37688888 + (GGAA)n Simple_repeat Simple_repeat 3 126 0 5 1438 942 309 54 88 chr6 111828149 111828388 -37688649 - MLT1A1-int LTR MaLR -1473 262 33 5 1438 494 264 8 9 chr6 111828418 111828570 -37688467 - MLT1A1 LTR MaLR -12 396 255 5 1438 633 312 7 0 chr6 111829253 111829394 -37687643 - RSINE1 SINE B4 -22 143 2 5 1438 192 432 32 18 chr6 111829708 111829925 -37687112 + L3 LINE CR1 3976 4195 -294 5 1438 259 202 226 0 chr6 111830356 111830440 -37686597 - MER104 DNA Tc2 -77 104 2 5 1438 313 296 46 52 chr6 111830686 111830839 -37686198 + RSINE1 SINE B4 2 153 -12 5 1438 257 343 71 0 chr6 111831291 111831390 -37685647 + MER63B DNA AcHobo 282 387 -49 5 1438 333 288 114 0 chr6 111831721 111831853 -37685184 + HAL1-3A_ME LINE L1 1975 2121 -737 5 1438 1466 276 100 23 chr6 111832974 111833456 -37683581 + Lx8 LINE L1 6782 7300 -173 5 1438 1004 141 0 6 chr6 111833469 111833647 -37683390 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 5 1438 202 294 0 0 chr6 111835024 111835092 -37681945 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1438 231 36 0 0 chr6 111835097 111835125 -37681912 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1438 1218 194 5 9 chr6 111836266 111836484 -37680553 - URR1B DNA MER1_type -1 224 8 5 1438 1127 244 142 55 chr6 111837146 111837243 -37679794 + RLTR20D LTR ERVK 1 85 -483 5 1438 3564 78 4 7 chr6 111837243 111837706 -37679331 - L1_Mus3 LINE L1 -3 6635 6174 5 1438 1127 244 142 55 chr6 111837706 111838043 -37678994 + RLTR20D LTR ERVK 86 464 -104 5 1438 473 0 18 0 chr6 111838043 111838100 -37678937 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1438 1127 253 130 66 chr6 111838100 111838185 -37678852 + RLTR20D LTR ERVK 458 550 -1 5 1438 297 0 0 0 chr6 111838940 111838973 -37678064 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1438 242 333 0 0 chr6 111839840 111839900 -37677137 - Lx8 LINE L1 -496 6977 6918 5 1438 1068 291 144 16 chr6 111839897 111840334 -37676703 + Lx8 LINE L1 6981 7473 0 5 1438 615 156 12 6 chr6 111841200 111841361 -37675676 + (TG)n Simple_repeat Simple_repeat 1 162 0 5 1438 748 153 6 6 chr6 111841375 111841546 -37675491 + (TG)n Simple_repeat Simple_repeat 2 172 0 5 1438 941 297 48 15 chr6 111841945 111842215 -37674822 + B4 SINE B4 3 281 -11 5 1438 7842 153 34 13 chr6 111842482 111843836 -37673201 - Lx4A LINE L1 -2 7056 5674 5 1438 6457 114 80 10 chr6 111843835 111844903 -37672134 - L1_Mur2 LINE L1 -1182 4695 3554 5 1438 1833 116 18 52 chr6 111844903 111845230 -37671807 - L1_Mur2 LINE L1 -3426 2451 2136 5 1438 1445 144 58 0 chr6 111845223 111845480 -37671557 - L1_Mur2 LINE L1 -5985 1101 830 5 1438 768 261 69 63 chr6 111845640 111845972 -37671065 - L1MB3 LINE L1 -33 6150 5817 5 1438 235 351 11 11 chr6 111846375 111846470 -37670567 - L1MB3 LINE L1 -411 5772 5678 5 1438 181 128 0 41 chr6 111846503 111846552 -37670485 + T-rich Low_complexity Low_complexity 3 49 0 5 1438 28 29 0 0 chr6 111846691 111846726 -37670311 + AT_rich Low_complexity Low_complexity 1 35 0 5 1438 397 247 139 48 chr6 111846732 111846919 -37670118 - L1MB3 LINE L1 -517 5672 5469 5 1438 3456 41 134 0 chr6 111846961 111847380 -37669657 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1438 546 133 15 144 chr6 111847381 111847513 -37669524 + IAPEz-int LTR ERVK 9 123 -6358 5 1438 231 267 0 0 chr6 111847513 111847558 -37669479 + RLTR27 LTR ERVK 231 275 -34 5 1438 226 321 0 0 chr6 111847586 111847639 -37669398 + RLTR27 LTR ERVK 223 275 -34 5 1438 3692 53 1 16 chr6 111847639 111848217 -37668820 + IAPEz-int LTR ERVK 168 662 -5819 5 1438 2745 58 0 3 chr6 111848217 111848560 -37668477 + IAPEz-int LTR ERVK 1359 1700 -4781 5 1438 6477 55 12 18 chr6 111848555 111849387 -37667650 + IAPEz-int LTR ERVK 5653 6479 -2 5 1438 3412 40 30 0 chr6 111849389 111849788 -37667249 + IAPLTR2a LTR ERVK 1 411 0 5 1438 381 248 77 19 chr6 111849797 111849953 -37667084 - L1MB3 LINE L1 -744 5434 5270 5 1438 498 326 0 20 chr6 111849980 111850130 -37666907 - RSINE1 SINE B4 -17 148 2 5 1438 416 226 76 34 chr6 111850397 111850516 -37666521 + Lx8 LINE L1 6535 6658 -815 5 1438 1561 68 0 14 chr6 111850516 111850724 -37666313 + L1_Mus4 LINE L1 6426 6630 -6 5 1438 2553 261 63 38 chr6 111850791 111851615 -37665422 + Lx8 LINE L1 6620 7464 -9 5 1438 243 260 92 20 chr6 111851769 111851867 -37665170 - MER53 DNA hAT -86 107 3 5 1438 1135 72 18 0 chr6 111851991 111852157 -37664880 + (TTTC)n Simple_repeat Simple_repeat 4 172 0 5 1438 278 238 199 73 chr6 111852183 111852319 -37664718 - MTEb LTR MaLR -201 178 26 5 1438 21 0 0 0 chr6 111852746 111852767 -37664270 + AT_rich Low_complexity Low_complexity 1 21 0 5 1438 2519 122 3 21 chr6 111852767 111853152 -37663885 - Lx LINE L1 -12 6642 6265 5 1438 1059 81 7 0 chr6 111853154 111853302 -37663735 + MusHAL1 LINE L1 1579 1727 -985 5 1438 218 296 18 54 chr6 111855107 111855275 -37661762 + (CATATA)n Simple_repeat Simple_repeat 3 164 0 5 1438 522 180 0 0 chr6 111855391 111855491 -37661546 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 1438 393 22 0 0 chr6 111855773 111855819 -37661218 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 5 1438 558 331 90 18 chr6 111856000 111856335 -37660702 - ORR1E LTR MaLR 0 359 1 5 1438 657 25 0 0 chr6 111857130 111857209 -37659828 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 5 1438 2124 123 72 35 chr6 111858003 111858349 -37658688 + ORR1B2 LTR MaLR 1 359 -8 5 1438 300 294 43 11 chr6 111858903 111858996 -37658041 + PB1D10 SINE Alu 12 107 -10 5 1438 230 288 46 46 chr6 111859580 111859689 -37657348 + MLT2B4 LTR ERVL 13 121 -394 5 1438 377 307 96 4 chr6 111859713 111859851 -37657186 + MLT2B4 LTR ERVL 329 488 -79 5 1438 691 69 20 0 chr6 111859851 111859953 -37657084 + (TC)n Simple_repeat Simple_repeat 1 104 0 5 1438 329 313 88 41 chr6 111859953 111859987 -37657050 + MLT2B4 LTR ERVL 489 523 -44 5 1438 711 285 10 29 chr6 111859973 111860179 -37656858 + B3 SINE B2 9 210 -6 5 1438 225 365 104 71 chr6 111860649 111860917 -37656120 - MLT1I LTR MaLR -74 337 61 5 1438 231 321 12 0 chr6 111860971 111861052 -37655985 - HAL1 LINE L1 -788 1719 1638 5 1438 297 278 0 0 chr6 111861343 111861397 -37655640 + RSINE1 SINE B4 102 155 -10 5 1438 414 0 0 0 chr6 111862522 111862568 -37654469 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1438 398 240 0 0 chr6 111862710 111862785 -37654252 - B4 SINE B4 -217 75 1 5 1438 393 22 0 0 chr6 111863107 111863153 -37653884 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1438 599 289 12 18 chr6 111863157 111863326 -37653711 + MLT1B LTR MaLR 214 381 -9 6 1438 242 370 42 30 chr6 111863337 111863504 -37653533 - LTR16E2 LTR ERVL -167 401 233 6 1438 302 206 0 40 chr6 111864641 111864717 -37652320 + BC1_Mm scRNA scRNA 13 85 -67 6 1438 208 260 53 27 chr6 111865214 111865289 -37651748 + L2 LINE L2 2782 2858 -561 6 1438 369 0 0 0 chr6 111865425 111865466 -37651571 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1438 850 9 19 0 chr6 111865466 111865572 -37651465 + (TG)n Simple_repeat Simple_repeat 2 110 0 6 1438 246 128 0 0 chr6 111865635 111865674 -37651363 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1438 1524 259 55 0 chr6 111866221 111866564 -37650473 - ORR1D2 LTR MaLR -8 362 1 6 1438 225 206 59 73 chr6 111866638 111866706 -37650331 - Lx5 LINE L1 -487 6563 6497 6 1438 567 308 82 39 chr6 111867064 111867297 -37649740 + MTEa LTR MaLR 3 245 -134 6 1438 233 172 0 33 chr6 111867570 111867630 -37649407 + GA-rich Low_complexity Low_complexity 4 61 0 6 1438 276 276 68 56 chr6 111868261 111868422 -37648615 + L5 LINE RTE 2100 2262 -3 6 1438 21 0 0 0 chr6 111868471 111868492 -37648545 + AT_rich Low_complexity Low_complexity 1 21 0 6 1438 22 0 0 0 chr6 111868825 111868847 -37648190 + AT_rich Low_complexity Low_complexity 1 22 0 6 1438 781 287 22 64 chr6 111868858 111869172 -37647865 + B4 SINE B4 2 292 0 6 1438 243 331 147 40 chr6 111869205 111869504 -37647533 + LTR48B LTR ERV1 1 331 -313 6 1438 278 346 76 38 chr6 111870186 111870291 -37646746 - LTR16A1 LTR ERVL -346 110 2 6 1438 2737 69 3 11 chr6 111871477 111871844 -37645193 - MTB_Mm LTR MaLR -43 364 1 6 1438 507 233 203 0 chr6 111871982 111872115 -37644922 + B3A SINE B2 1 160 -38 6 1438 414 57 0 0 chr6 111872128 111872181 -37644856 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1438 25 51 0 0 chr6 111872188 111872227 -37644810 + AT_rich Low_complexity Low_complexity 1 39 0 6 1438 1322 225 67 8 chr6 111872617 111872959 -37644078 + MTC LTR MaLR 5 402 -19 6 1438 190 373 81 15 chr6 111873913 111874049 -37642988 + MIRb SINE MIR 51 195 -73 6 1438 279 265 92 61 chr6 111874934 111875084 -37641953 - MIRc SINE MIR -79 189 18 6 1438 634 322 11 48 chr6 111875634 111875823 -37641214 - B3 SINE B2 -33 183 2 6 1438 6545 176 70 45 chr6 111875845 111877342 -37639695 - Lx5 LINE L1 0 7050 5489 6 1438 340 274 63 45 chr6 111878002 111878113 -37638924 + RLTR14 LTR ERV1 267 379 -3 6 1438 621 271 54 5 chr6 111879032 111879236 -37637801 - B3 SINE B2 -1 215 2 6 1438 495 353 18 6 chr6 111879262 111879430 -37637607 - ID_B1 SINE B4 -54 170 1 6 1438 22 0 0 0 chr6 111879797 111879819 -37637218 + AT_rich Low_complexity Low_complexity 1 22 0 6 1438 797 232 78 62 chr6 111879888 111880081 -37636956 - B3A SINE B2 0 198 3 6 1438 34 0 0 0 chr6 111880086 111880120 -37636917 + AT_rich Low_complexity Low_complexity 1 34 0 6 1438 629 232 71 14 chr6 111880306 111880446 -37636591 + B1_Mur2 SINE Alu 1 148 -1 6 1438 490 360 80 100 chr6 111880996 111881496 -37635541 + MLT1F2 LTR MaLR 7 496 -64 6 1438 486 0 0 0 chr6 111882303 111882357 -37634680 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1438 215 339 0 0 chr6 111883553 111883609 -37633428 - L2a LINE L2 -23 3403 3348 6 1438 1209 75 58 0 chr6 111883611 111883784 -37633253 + RMER6C LTR ERVK 508 690 0 6 1438 185 361 25 25 chr6 111883918 111884040 -37632997 - MIR SINE MIR -96 166 45 6 1438 195 306 0 0 chr6 111885368 111885417 -37631620 + MIRc SINE MIR 107 155 -113 6 1438 2207 126 41 41 chr6 111885473 111885838 -37631199 + IAPLTR1_Mm LTR ERVK 1 365 -2 6 1438 4482 59 23 2 chr6 111885838 111886412 -37630625 + IAPEz-int LTR ERVK 6 591 -5890 6 1438 446 66 0 32 chr6 111886444 111886507 -37630530 + IAPEz-int LTR ERVK 1359 1419 -5062 6 1438 1894 107 4 4 chr6 111886496 111886758 -37630279 + IAPEz-int LTR ERVK 2236 2497 -5183 6 1438 955 80 24 0 chr6 111886753 111886878 -37630159 + IAPEz-int LTR ERVK 4783 4910 -2770 6 1438 22500 14 1 0 chr6 111886878 111889831 -37627206 + IAPEz-int LTR ERVK 3525 6481 0 6 1438 2088 122 41 41 chr6 111889831 111890198 -37626839 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1438 1244 268 34 34 chr6 111890662 111891041 -37625996 + MTE2a LTR MaLR 1 379 0 6 1438 305 145 16 0 chr6 111892400 111892462 -37624575 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1438 313 330 17 0 chr6 111892664 111892779 -37624258 + (CATA)n Simple_repeat Simple_repeat 1 117 0 6 1438 1411 301 89 36 chr6 111893245 111893853 -37623184 - Lx8 LINE L1 -11 7462 6819 6 1438 603 0 0 0 chr6 111893853 111893920 -37623117 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 6 1438 414 0 0 0 chr6 111893920 111893966 -37623071 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1438 1411 290 429 18 chr6 111893966 111894111 -37622926 - Lx8 LINE L1 -655 6818 6617 6 1438 1047 58 0 0 chr6 111894940 111895106 -37621931 + L1_Mus1 LINE L1 6429 6567 0 6 1438 236 264 0 0 chr6 111895106 111895159 -37621878 + B3A SINE B2 27 79 -119 6 1438 6987 72 8 28 chr6 111895747 111896949 -37620088 - L1_Mus2 LINE L1 0 6566 5392 6 1438 2829 104 2 0 chr6 111896946 111897390 -37619647 - MusHAL1 LINE L1 -900 1812 1368 6 1438 6310 77 24 3 chr6 111897759 111898607 -37618430 - L1_Mus4 LINE L1 -6 6630 5766 6 1438 912 35 0 0 chr6 111898619 111898734 -37618303 - L1_Mus4 LINE L1 -756 5880 5766 6 1438 258 280 54 0 chr6 111898742 111898839 -37618198 - MIRm SINE MIR -129 147 32 6 1438 1019 174 0 0 chr6 111899011 111899172 -37617865 + B2_Mm2 SINE B2 3 163 -32 6 1438 22 35 0 0 chr6 111899182 111899211 -37617826 + AT_rich Low_complexity Low_complexity 1 29 0 6 1438 405 109 0 0 chr6 111899211 111899275 -37617762 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1438 423 364 0 0 chr6 111899289 111899418 -37617619 - RSINE1 SINE B4 -25 140 12 6 1438 801 340 96 23 chr6 111899998 111900161 -37616876 - MER21B LTR ERV1 -48 815 633 6 1438 513 0 0 0 chr6 111900161 111900218 -37616819 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1438 801 340 96 23 chr6 111900218 111900491 -37616546 - MER21B LTR ERV1 -231 632 347 6 1438 216 0 0 0 chr6 111901161 111901185 -37615852 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 1438 763 156 70 8 chr6 111901442 111901571 -37615466 - B1_Mur4 SINE Alu -5 145 9 6 1438 998 222 5 10 chr6 111901932 111902137 -37614900 - B3 SINE B2 -11 205 2 6 1438 236 130 37 0 chr6 111902960 111903014 -37614023 + (TCTCTG)n Simple_repeat Simple_repeat 5 60 0 6 1438 543 81 0 0 chr6 111903359 111903445 -37613592 + (TC)n Simple_repeat Simple_repeat 2 87 0 6 1438 193 196 19 58 chr6 111903482 111903585 -37613452 + CT-rich Low_complexity Low_complexity 3 101 0 6 1438 816 295 29 21 chr6 111904802 111905037 -37612000 + B4A SINE B4 2 238 -54 6 1438 683 320 28 0 chr6 111905037 111905215 -37611822 + B3A SINE B2 1 183 -15 6 1438 249 159 0 0 chr6 111905247 111905291 -37611746 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1438 302 241 70 26 chr6 111905365 111905480 -37611557 + L1M4b LINE L1 1821 1940 -5394 6 1438 504 321 0 0 chr6 111905955 111906092 -37610945 + ID_B1 SINE B4 81 217 -7 6 1438 957 244 13 58 chr6 111906172 111906370 -37610667 + B3 SINE B2 1 195 -21 6 1438 553 14 27 0 chr6 111906370 111906444 -37610593 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 6 1438 957 244 13 58 chr6 111906444 111906471 -37610566 + B3 SINE B2 196 216 0 6 1438 753 329 26 38 chr6 111906729 111906994 -37610043 + B4A SINE B4 31 292 0 6 1438 25 0 0 0 chr6 111907249 111907274 -37609763 + AT_rich Low_complexity Low_complexity 1 25 0 6 1438 3743 97 31 0 chr6 111907435 111908053 -37608984 + MusHAL1 LINE L1 82 718 -1994 6 1438 11589 97 36 7 chr6 111908036 111909839 -37607198 + L1_Mm LINE L1 3277 5131 -752 6 1438 3037 76 0 2 chr6 111909839 111910236 -37606801 + L1_Mus1 LINE L1 6171 6566 -1 6 1438 393 296 5 43 chr6 111910536 111910720 -37606317 + CT-rich Low_complexity Low_complexity 2 178 0 6 1438 181 232 0 44 chr6 111911354 111911399 -37605638 - L2a LINE L2 -12 3414 3372 6 1438 426 282 18 6 chr6 111912300 111912471 -37604566 + GA-rich Low_complexity Low_complexity 1 173 0 6 1438 644 264 0 146 chr6 111912812 111913025 -37604012 + B3A SINE B2 1 182 -16 6 1438 216 0 0 0 chr6 111913053 111913077 -37603960 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1438 216 0 0 0 chr6 111913914 111913938 -37603099 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1438 442 276 89 8 chr6 111914367 111914491 -37602546 - B1F SINE Alu -10 139 6 6 1438 743 253 85 30 chr6 111914529 111914729 -37602308 - B3 SINE B2 -5 211 1 6 1438 562 321 74 37 chr6 111914958 111915175 -37601862 + B4A SINE B4 2 226 -66 6 1438 1228 262 12 36 chr6 111915179 111915515 -37601522 + Lx5 LINE L1 6723 7050 0 6 1438 380 241 106 51 chr6 111916699 111916917 -37600120 - L1MA5 LINE L1 -276 6024 5801 6 1438 953 94 3 0 chr6 111916915 111917069 -37599968 - Lx3C LINE L1 -1138 5838 5645 6 1438 2914 163 72 13 chr6 111917865 111918417 -37598620 + RMER4B LTR ERVK 1 585 0 6 1438 1599 196 15 84 chr6 111918428 111918761 -37598276 - RMER1C Other Other 0 1342 1040 6 1438 2991 110 29 2 chr6 111918761 111919209 -37597828 + L1_Mus4 LINE L1 6177 6636 0 6 1438 1599 196 15 84 chr6 111919209 111919349 -37597688 - RMER1C Other Other -303 1039 902 6 1438 548 330 64 82 chr6 111919350 111919693 -37597344 - ORR1E LTR MaLR -13 346 10 6 1438 296 275 41 62 chr6 111920566 111920605 -37596432 + MER2 DNA MER2_type 146 187 -158 6 1438 1549 227 55 0 chr6 111920605 111920953 -37596084 + ORR1D2 LTR MaLR 2 368 -2 6 1438 296 275 41 62 chr6 111920953 111921010 -37596027 + MER2 DNA MER2_type 188 240 -105 6 1438 285 246 53 40 chr6 111921220 111921296 -37595741 - ID4_ SINE ID -3 80 4 6 1438 733 284 67 39 chr6 111921874 111922156 -37594881 + B4 SINE B4 1 290 -2 6 1438 247 250 0 0 chr6 111922160 111922212 -37594825 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1438 605 265 57 120 chr6 111923552 111923863 -37593174 + ORR1E LTR MaLR 52 361 -18 6 1438 448 183 0 0 chr6 111923954 111924036 -37593001 + B3 SINE B2 2 83 -133 7 1438 23 54 0 0 chr6 111924074 111924111 -37592926 + AT_rich Low_complexity Low_complexity 1 37 0 7 1438 319 338 0 0 chr6 111924259 111924330 -37592707 + ID4 SINE ID 6 76 -7 7 1438 465 327 54 6 chr6 111925143 111925309 -37591728 - MLT1E3 LTR MaLR -237 387 214 7 1438 776 293 24 0 chr6 111926184 111926389 -37590648 + B3 SINE B2 2 211 -5 7 1438 938 256 44 32 chr6 111926516 111926855 -37590182 - RLTR15 LTR ERVK -16 343 1 7 1438 3945 175 74 48 chr6 111926855 111927626 -37589411 - MYSERV6-int LTR ERVK -2 8957 8172 7 1438 483 18 0 0 chr6 111927626 111927682 -37589355 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 7 1438 3945 227 147 113 chr6 111927682 111929297 -37587740 - MYSERV6-int LTR ERVK -788 8171 7930 7 1438 792 259 67 24 chr6 111929871 111930200 -37586837 - RLTR15 LTR ERVK -16 343 1 7 1438 324 302 66 0 chr6 111930200 111930304 -37586733 + B3A SINE B2 34 144 -54 7 1438 342 363 147 11 chr6 111930701 111930974 -37586063 + MER2 DNA MER2_type 4 313 -32 7 1438 339 289 13 0 chr6 111931115 111931191 -37585846 + RSINE1 SINE B4 1 77 -88 7 1438 448 316 92 34 chr6 111931799 111932061 -37584976 + MLT1F LTR MaLR 256 532 -16 7 1438 1262 41 0 45 chr6 111933535 111933697 -37583340 + B2_Mm1a SINE B2 1 154 -39 7 1438 477 0 0 0 chr6 111933697 111933750 -37583287 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 7 1438 1262 41 0 45 chr6 111933750 111933765 -37583272 + B2_Mm1a SINE B2 155 169 -24 7 1438 773 290 144 15 chr6 111933768 111933916 -37583121 + MTD LTR MaLR 46 213 -206 7 1438 270 0 0 0 chr6 111933916 111933946 -37583091 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 7 1438 773 290 144 15 chr6 111933946 111934123 -37582914 + MTD LTR MaLR 214 413 -6 7 1438 1912 171 16 3 chr6 111934126 111934449 -37582588 - ORR1A2 LTR MaLR 0 327 1 7 1438 195 337 0 67 chr6 111935251 111935356 -37581681 + MIR SINE MIR 48 145 -63 7 1439 237 346 0 0 chr6 111935715 111935816 -37581221 + L2 LINE L2 1830 1930 -1489 7 1439 314 264 25 114 chr6 111936175 111936333 -37580704 - ORR1E LTR MaLR -168 191 48 7 1439 1854 183 12 89 chr6 111936530 111936933 -37580104 - ORR1D1 LTR MaLR 0 374 3 7 1439 1350 247 100 0 chr6 111937609 111937929 -37579108 - ORR1D2 LTR MaLR -8 362 11 7 1439 240 299 0 54 chr6 111939132 111939224 -37577813 + B1F SINE Alu 63 149 0 7 1439 292 286 14 0 chr6 111939228 111939298 -37577739 + ID4_ SINE ID 3 73 -10 7 1439 1192 285 87 3 chr6 111939519 111939888 -37577149 + MTD LTR MaLR 18 417 -2 7 1439 2025 186 52 0 chr6 111939969 111940334 -37576703 + ORR1C2 LTR MaLR 1 384 0 7 1439 375 336 102 25 chr6 111940408 111940662 -37576375 + MLT2D LTR ERVL 27 305 -109 7 1439 24 32 0 0 chr6 111940860 111940891 -37576146 + AT_rich Low_complexity Low_complexity 1 31 0 7 1439 468 324 15 118 chr6 111940900 111940927 -37576110 + B3 SINE B2 8 33 -183 7 1439 261 0 0 0 chr6 111940927 111940956 -37576081 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1439 634 284 17 30 chr6 111940956 111941140 -37575897 + B3A SINE B2 27 196 -2 7 1439 859 312 26 4 chr6 111942108 111942340 -37574697 + 7SK RNA RNA 4 240 -91 7 1439 2847 58 6 0 chr6 111942826 111943190 -37573847 - L1Md_F2 LINE L1 -12 6570 6205 7 1439 964 49 0 0 chr6 111943189 111943312 -37573725 - L1_Mus1 LINE L1 -18 6549 6427 7 1439 23 68 0 0 chr6 111943353 111943397 -37573640 + AT_rich Low_complexity Low_complexity 1 44 0 7 1439 754 265 47 57 chr6 111943919 111944131 -37572906 + B4A SINE B4 1 210 -82 7 1439 265 281 125 0 chr6 111944129 111944193 -37572844 - PB1D10 SINE Alu -45 72 1 7 1439 520 57 0 0 chr6 111944344 111944414 -37572623 - L1Md_T LINE L1 -566 6016 5947 7 1439 1923 51 0 0 chr6 111944414 111944649 -37572388 + L1Md_T LINE L1 6347 6581 -1 7 1439 195 296 40 53 chr6 111944728 111944803 -37572234 - MIR SINE MIR -119 143 70 7 1439 1065 85 0 0 chr6 111945305 111945458 -37571579 + L1Md_F3 LINE L1 6431 6583 -1 7 1439 216 77 58 0 chr6 111945503 111945555 -37571482 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 7 1439 478 269 29 0 chr6 111945583 111945687 -37571350 + RSINE1 SINE B4 11 117 -48 7 1439 43 0 0 0 chr6 111945734 111945777 -37571260 + AT_rich Low_complexity Low_complexity 1 43 0 7 1439 1128 298 38 9 chr6 111946172 111946491 -37570546 - MTEa LTR MaLR 0 379 52 7 1439 496 224 28 14 chr6 111946493 111946638 -37570399 - L1_Rod LINE L1 -4016 1831 1685 7 1439 369 195 52 0 chr6 111946643 111946720 -37570317 - MTEa LTR MaLR -298 81 1 7 1439 239 226 108 0 chr6 111947057 111947159 -37569878 - Charlie1a DNA MER1_type -99 1356 1244 7 1439 1022 333 40 77 chr6 111947177 111947798 -37569239 - Charlie1a DNA MER1_type -750 705 108 7 1439 260 258 137 21 chr6 111947832 111947927 -37569110 + B1F SINE Alu 36 141 -8 7 1439 267 100 85 43 chr6 111948017 111948111 -37568926 + (CAGAGA)n Simple_repeat Simple_repeat 4 101 0 7 1439 995 279 34 11 chr6 111948570 111948835 -37568202 + B4A SINE B4 2 272 -20 7 1439 201 147 0 0 chr6 111948934 111948968 -37568069 + (TAA)n Simple_repeat Simple_repeat 3 36 0 7 1439 810 318 21 37 chr6 111949320 111949562 -37567475 + 7SK RNA RNA 1 238 -93 7 1439 498 263 73 81 chr6 111949954 111950202 -37566835 + Lx8 LINE L1 6257 6502 -971 7 1439 1391 29 6 0 chr6 111951112 111951283 -37565754 + L1_Mus1 LINE L1 6396 6567 0 7 1439 327 288 63 28 chr6 111952386 111952529 -37564508 - L2b LINE L2 0 3375 3228 7 1439 181 262 107 80 chr6 111952513 111952625 -37564412 - MIR3 SINE MIR -12 196 82 7 1439 483 18 0 0 chr6 111952651 111952707 -37564330 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1439 393 360 53 95 chr6 111952721 111953025 -37564012 + B4A SINE B4 2 292 0 7 1439 248 329 0 24 chr6 111953597 111953681 -37563356 - ID SINE ID -140 84 3 7 1439 354 45 0 0 chr6 111954662 111954706 -37562331 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1439 865 282 36 5 chr6 111954706 111954930 -37562107 - B4A SINE B4 -58 234 4 7 1439 314 374 30 4 chr6 111955324 111955503 -37561534 - MER58A DNA MER1_type -1 223 35 7 1439 26 0 0 0 chr6 111955560 111955586 -37561451 + AT_rich Low_complexity Low_complexity 1 26 0 7 1439 21 36 0 0 chr6 111955650 111955678 -37561359 + AT_rich Low_complexity Low_complexity 1 28 0 7 1439 406 333 114 40 chr6 111956049 111956277 -37560760 - MLT1A0 LTR MaLR -51 314 70 7 1439 318 50 0 0 chr6 111956277 111956317 -37560720 + (CAT)n Simple_repeat Simple_repeat 1 40 0 7 1439 749 300 55 0 chr6 111956473 111956673 -37560364 - ID_B1 SINE B4 -7 217 7 7 1439 808 280 66 63 chr6 111956719 111957005 -37560032 - MLT1A0 LTR MaLR -76 289 3 7 1439 45 34 0 0 chr6 111957266 111957325 -37559712 + AT_rich Low_complexity Low_complexity 1 59 0 7 1439 303 212 0 0 chr6 111957622 111957702 -37559335 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1439 26 30 0 0 chr6 111957715 111957748 -37559289 + AT_rich Low_complexity Low_complexity 1 33 0 7 1439 212 91 21 64 chr6 111957842 111957889 -37559148 + CT-rich Low_complexity Low_complexity 1 45 0 7 1439 447 300 72 20 chr6 111958592 111958745 -37558292 + B4 SINE B4 1 161 -131 7 1439 252 352 19 0 chr6 111958824 111958932 -37558105 + (CATATA)n Simple_repeat Simple_repeat 1 110 0 7 1439 4369 58 20 9 chr6 111959111 111959669 -37557368 - LTRIS2 LTR ERV1 0 564 1 7 1439 26 64 0 0 chr6 111960328 111960375 -37556662 + AT_rich Low_complexity Low_complexity 1 47 0 7 1439 747 288 0 30 chr6 111960378 111960546 -37556491 - RSINE1 SINE B4 0 165 3 7 1439 535 246 23 40 chr6 111960763 111960937 -37556100 - HAL1-2a_MD LINE L1 -509 2515 2345 7 1439 255 238 11 56 chr6 111960950 111961029 -37556008 + (ATGGTG)n Simple_repeat Simple_repeat 4 78 0 7 1439 288 0 0 0 chr6 111961029 111961061 -37555976 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1439 255 238 11 56 chr6 111961061 111961070 -37555967 + (ATGGTG)n Simple_repeat Simple_repeat 1 9 0 7 1439 183 42 0 0 chr6 111961502 111961526 -37555511 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1439 315 298 61 9 chr6 111961815 111961930 -37555107 + RMER5 LTR ERV1 33 153 -381 7 1439 4635 46 2 2 chr6 111961955 111962541 -37554496 + L1_Mus1 LINE L1 5869 6454 -113 7 1439 237 277 35 46 chr6 111962542 111962629 -37554408 - MLT1F2 LTR MaLR -163 397 312 7 1439 482 144 30 20 chr6 111962645 111962730 -37554307 - MTD LTR MaLR -8 411 326 7 1439 665 104 0 0 chr6 111962730 111962826 -37554211 - ORR1C1 LTR MaLR 0 378 283 7 1439 867 298 100 21 chr6 111962802 111963182 -37553855 + RMER5 LTR ERV1 121 530 -4 7 1439 419 345 0 54 chr6 111965091 111965238 -37551799 + ID_B1 SINE B4 73 211 -13 7 1439 240 35 0 0 chr6 111965273 111965302 -37551735 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1439 878 152 0 22 chr6 111965302 111965484 -37551553 + (TA)n Simple_repeat Simple_repeat 2 179 0 7 1439 459 0 0 0 chr6 111965507 111965558 -37551479 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 7 1439 204 156 45 45 chr6 111966033 111966100 -37550937 + T-rich Low_complexity Low_complexity 6 72 0 7 1439 605 196 234 11 chr6 111966276 111966451 -37550586 - B4A SINE B4 -42 250 37 7 1439 314 379 75 15 chr6 111966465 111966666 -37550371 + MLT1F2 LTR MaLR 94 306 -254 7 1439 3962 88 7 2 chr6 111967203 111967750 -37549287 + L1Md_F2 LINE L1 6031 6580 -2 7 1439 774 285 9 23 chr6 111967947 111968166 -37548871 + B3 SINE B2 1 216 0 7 1439 279 0 0 0 chr6 111968218 111968249 -37548788 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1439 459 0 0 0 chr6 111968249 111968299 -37548738 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1439 194 269 61 49 chr6 111969341 111969423 -37547614 - MIRm SINE MIR -143 133 51 7 1439 842 249 133 17 chr6 111969454 111969695 -37547342 + MTEa LTR MaLR 1 269 -110 7 1439 381 314 10 50 chr6 111970385 111970583 -37546454 - L1MD2 LINE L1 -55 6304 6115 7 1439 305 163 0 55 chr6 111970667 111970758 -37546279 + CT-rich Low_complexity Low_complexity 1 86 0 8 1439 452 315 62 8 chr6 111970791 111970919 -37546118 - B1_Mur1 SINE Alu -3 146 12 8 1439 481 224 23 9 chr6 111971052 111971176 -37545861 + B3 SINE B2 3 130 -68 8 1439 234 258 32 0 chr6 111971845 111971907 -37545130 + MIR SINE MIR 86 149 -113 8 1439 411 21 0 0 chr6 111972384 111972432 -37544605 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1439 180 111 0 0 chr6 111972574 111972601 -37544436 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1439 951 130 11 11 chr6 111973184 111973363 -37543674 + GA-rich Low_complexity Low_complexity 2 180 0 8 1439 531 0 0 0 chr6 111973366 111973425 -37543612 + (GAGAA)n Simple_repeat Simple_repeat 1 59 0 8 1439 366 347 61 20 chr6 111973455 111973652 -37543385 + L1MCa LINE L1 1059 1263 -5245 8 1439 1857 230 31 26 chr6 111975254 111975670 -37541367 - MTD LTR MaLR -1 418 1 8 1439 348 311 46 19 chr6 111977709 111977817 -37539220 - RSINE1 SINE B4 -4 161 51 8 1439 832 300 112 34 chr6 111978056 111978791 -37538246 + L1MC3 LINE L1 6164 6955 -830 8 1439 1239 73 17 6 chr6 111978908 111979086 -37537951 + L1Md_F3 LINE L1 6389 6568 -16 8 1439 317 418 0 22 chr6 111979149 111979286 -37537751 - MLT1J LTR MaLR -104 408 275 8 1439 352 296 41 0 chr6 111979356 111979454 -37537583 - MLT1J LTR MaLR -350 162 61 8 1439 25 0 0 0 chr6 111979463 111979488 -37537549 + AT_rich Low_complexity Low_complexity 1 25 0 8 1439 1257 294 45 0 chr6 111979515 111979913 -37537124 + MTD LTR MaLR 4 419 0 8 1439 603 252 23 8 chr6 111979938 111980070 -37536967 + B3A SINE B2 5 138 -60 8 1439 667 305 107 30 chr6 111980165 111980503 -37536534 + MLT1A0 LTR MaLR 1 364 -1 8 1439 601 121 0 46 chr6 111981239 111981369 -37535668 + (TAGA)n Simple_repeat Simple_repeat 2 125 0 8 1439 287 368 97 31 chr6 111982302 111982498 -37534539 - LTR16A LTR ERVL -5 446 238 8 1439 21 36 0 0 chr6 111983957 111983985 -37533052 + AT_rich Low_complexity Low_complexity 1 28 0 8 1439 1195 167 110 0 chr6 111984002 111984230 -37532807 - ORR1C2 LTR MaLR 0 384 132 8 1439 1092 91 0 0 chr6 111984237 111984391 -37532646 + (TTC)n Simple_repeat Simple_repeat 1 154 0 8 1439 1630 79 121 0 chr6 111984391 111984631 -37532406 - L1_Mus3 LINE L1 -16 6622 6354 8 1439 1090 79 0 0 chr6 111984631 111984783 -37532254 + L1_Mus3 LINE L1 6229 6380 -258 8 1439 765 168 0 8 chr6 111984784 111984910 -37532127 - ORR1C2 LTR MaLR -259 125 1 8 1439 21 36 0 0 chr6 111984999 111985027 -37532010 + AT_rich Low_complexity Low_complexity 1 28 0 8 1439 21 36 0 0 chr6 111985398 111985426 -37531611 + AT_rich Low_complexity Low_complexity 1 28 0 8 1439 1226 171 23 0 chr6 111985452 111985669 -37531368 + URR1B DNA MER1_type 4 225 0 8 1439 249 308 78 37 chr6 111985686 111985887 -37531150 - L2a LINE L2 -2 3424 3201 8 1439 180 357 100 20 chr6 111986045 111986145 -37530892 + L2b LINE L2 3240 3347 -28 8 1439 1521 68 0 0 chr6 111986548 111986739 -37530298 + B2_Mm1a SINE B2 1 191 -2 8 1439 623 258 46 62 chr6 111986899 111987159 -37529878 + Lx8 LINE L1 7176 7431 -42 8 1439 565 252 79 20 chr6 111987204 111987406 -37529631 + B3 SINE B2 1 214 -2 8 1439 399 21 0 0 chr6 111988090 111988138 -37528899 + (CAA)n Simple_repeat Simple_repeat 1 48 0 8 1439 492 48 0 0 chr6 111990050 111990113 -37526924 + (GA)n Simple_repeat Simple_repeat 2 64 0 8 1439 762 297 31 59 chr6 111990138 111990360 -37526677 + B3A SINE B2 1 216 0 8 1439 200 343 10 48 chr6 111991179 111991283 -37525754 - L2c LINE L2 -5 3382 3283 8 1439 396 0 0 0 chr6 111991315 111991359 -37525678 + (TTG)n Simple_repeat Simple_repeat 2 45 0 8 1439 2997 188 80 24 chr6 111993142 111993817 -37523220 - RLTR40 LTR ERVK -3 814 102 8 1439 457 59 109 0 chr6 111993818 111993937 -37523100 + (GTTTG)n Simple_repeat Simple_repeat 2 133 0 8 1439 1169 75 0 0 chr6 111993953 111994099 -37522938 - B1_Mus2 SINE Alu 0 147 2 8 1439 253 317 6 30 chr6 111994252 111994421 -37522616 - L1M4 LINE L1 -5302 1343 1179 8 1439 235 186 27 41 chr6 111994462 111994535 -37522502 + A-rich Low_complexity Low_complexity 3 74 0 8 1439 266 314 43 2 chr6 111994587 111994744 -37522293 - L1M4 LINE L1 -5783 862 608 8 1439 237 111 0 0 chr6 111994784 111994820 -37522217 - Lx4B LINE L1 -455 6603 6568 8 1439 1735 304 83 25 chr6 111994950 111994996 -37522041 - L1MC2 LINE L1 -11 6333 6288 8 1439 243 0 0 0 chr6 111994996 111995023 -37522014 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1439 1735 304 83 25 chr6 111995023 111995391 -37521646 - L1MC2 LINE L1 -57 6287 5915 8 1439 543 128 0 0 chr6 111995391 111995477 -37521560 + (CATA)n Simple_repeat Simple_repeat 1 86 0 8 1439 1735 299 85 15 chr6 111995477 111996362 -37520675 - L1MC2 LINE L1 -430 5914 4950 8 1439 1782 266 5 3 chr6 111996828 111997208 -37519829 - MTD LTR MaLR -18 401 21 8 1439 604 307 65 12 chr6 111997431 111997599 -37519438 + B3A SINE B2 2 178 -20 8 1439 225 175 51 34 chr6 111997602 111997661 -37519376 + (CAGAGA)n Simple_repeat Simple_repeat 1 60 0 8 1439 196 306 118 16 chr6 111999591 111999778 -37517259 + L2c LINE L2 3216 3422 -4 8 1439 688 264 98 64 chr6 112000249 112000484 -37516553 + B4 SINE B4 50 292 0 1 1439 374 322 62 100 chr6 112001076 112001366 -37515671 + B4A SINE B4 4 282 -10 2 1439 303 28 0 0 chr6 112001371 112001407 -37515630 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1439 1887 173 22 50 chr6 112003258 112003622 -37513415 + ORR1B1 LTR MaLR 41 394 0 4 1439 201 330 32 32 chr6 112003627 112003721 -37513316 - MER5A DNA MER1_type -19 170 77 5 1439 1230 239 34 4 chr6 112004039 112004304 -37512733 - MTD LTR MaLR -3 416 144 6 1439 1231 68 0 7 chr6 112004502 112004650 -37512387 + B1_Mus2 SINE Alu 1 147 0 7 1439 528 16 0 0 chr6 112005411 112005472 -37511565 + (TC)n Simple_repeat Simple_repeat 2 62 0 8 1439 333 0 0 0 chr6 112005472 112005508 -37511529 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1439 3186 31 5 5 chr6 112005508 112005899 -37511138 - MTA_Mm LTR MaLR -5 391 1 1 1439 558 311 16 93 chr6 112006065 112006377 -37510660 + B4A SINE B4 2 289 -3 1 1439 252 0 0 0 chr6 112006548 112006576 -37510461 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1439 593 307 48 24 chr6 112006692 112006942 -37510095 + Tigger5 DNA MER2_type 1 256 -2150 1 1439 659 319 13 17 chr6 112006939 112007172 -37509865 + Tigger5 DNA MER2_type 2168 2399 -7 1 1439 333 0 0 0 chr6 112007173 112007210 -37509827 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1439 277 320 59 39 chr6 112007300 112007453 -37509584 - MER117 DNA MER1_type -35 162 7 1 1439 230 250 0 0 chr6 112007584 112007644 -37509393 + RMER19B LTR ERVK 841 900 -2 1 1439 2461 234 49 11 chr6 112008531 112009080 -37507957 - Lx5 LINE L1 0 7050 6481 1 1439 3562 168 42 58 chr6 112009086 112009843 -37507194 + L1_Mur2 LINE L1 3936 4680 -1197 1 1439 24 32 0 0 chr6 112009973 112010004 -37507033 + AT_rich Low_complexity Low_complexity 1 31 0 1 1439 1114 268 107 13 chr6 112010011 112010479 -37506558 - L1MA5 LINE L1 -369 5931 5420 2 1439 679 309 65 12 chr6 112010508 112010814 -37506223 - MER2 DNA MER2_type -10 335 10 2 1439 264 245 9 122 chr6 112010846 112010953 -37506084 - MIRb SINE MIR -91 177 83 2 1439 382 355 113 52 chr6 112015078 112015387 -37501650 + MLT1K LTR MaLR 179 506 -89 2 1439 471 351 43 19 chr6 112015485 112015694 -37501343 - MER58A DNA MER1_type 0 224 11 2 1439 863 294 75 52 chr6 112015988 112016091 -37500946 + ORR1D2 LTR MaLR 2 92 -278 2 1439 4156 62 0 0 chr6 112016091 112016571 -37500466 - L1_Mus1 LINE L1 -1 6566 6087 2 1439 863 294 75 52 chr6 112016571 112016772 -37500265 + ORR1D2 LTR MaLR 93 313 -57 2 1439 612 313 44 0 chr6 112017116 112017298 -37499739 + B3A SINE B2 9 198 0 2 1439 39060 10 0 7 chr6 112017387 112022802 -37494235 + L1Md_A LINE L1 214 5586 -297 2 1439 9437 13 0 0 chr6 112022802 112023798 -37493239 + L1Md_A LINE L1 5587 6582 0 2 1439 262 256 25 128 chr6 112023842 112024027 -37493010 + MLT1H2 LTR MaLR 342 605 -19 2 1439 522 103 0 0 chr6 112024588 112024666 -37492371 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1439 624 96 26 0 chr6 112024709 112024824 -37492213 + (TG)n Simple_repeat Simple_repeat 2 119 0 3 1439 877 264 99 24 chr6 112024832 112025084 -37491953 - B4A SINE B4 -21 271 1 3 1439 299 250 42 42 chr6 112025387 112025483 -37491554 - RCHARR1 DNA MER1_type 0 974 879 3 1439 358 219 4 92 chr6 112025501 112025634 -37491403 + B3A SINE B2 80 215 -1 3 1439 399 227 192 8 chr6 112025661 112025781 -37491256 + Lx6 LINE L1 7277 7418 -42 3 1439 556 160 24 16 chr6 112025806 112025933 -37491104 - RCHARR1 DNA MER1_type -99 875 748 3 1439 1076 278 67 31 chr6 112025930 112026286 -37490751 - RCHARR1 DNA MER1_type -505 469 101 3 1439 436 252 29 73 chr6 112026299 112026436 -37490601 - RCHARR1 DNA MER1_type -840 134 4 3 1439 288 276 13 0 chr6 112026500 112026576 -37490461 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1439 633 335 25 30 chr6 112026595 112026795 -37490242 - B3A SINE B2 -16 200 2 3 1439 231 312 83 31 chr6 112027213 112027309 -37489728 + RLTR11A LTR ERVK 32 132 -396 3 1439 1553 253 18 12 chr6 112027435 112027767 -37489270 + MTEa LTR MaLR 1 334 -45 3 1439 252 338 113 60 chr6 112027871 112028189 -37488848 - L2a LINE L2 0 3426 3092 4 1439 456 330 37 21 chr6 112028313 112028554 -37488483 - L2a LINE L2 -801 2618 2374 4 1439 522 0 0 0 chr6 112028557 112028615 -37488422 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1439 1360 103 38 0 chr6 112029141 112029325 -37487712 - B2_Mm1t SINE B2 -2 191 1 4 1439 216 0 0 0 chr6 112030511 112030535 -37486502 + (GGAGAA)n Simple_repeat Simple_repeat 2 25 0 4 1439 1053 256 33 44 chr6 112031085 112031359 -37485678 + B4 SINE B4 1 271 -21 4 1439 552 111 0 0 chr6 112031360 112031450 -37485587 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 1439 1314 54 0 0 chr6 112031459 112031626 -37485411 + (TAGA)n Simple_repeat Simple_repeat 4 170 0 4 1439 461 229 0 0 chr6 112031649 112031732 -37485305 + B3A SINE B2 2 84 -114 4 1439 2007 164 3 11 chr6 112031732 112032089 -37484948 - RLTR15 LTR ERVK 0 359 6 4 1439 216 259 0 0 chr6 112032161 112032215 -37484822 + (CATA)n Simple_repeat Simple_repeat 2 55 0 4 1439 23 0 0 0 chr6 112032444 112032467 -37484570 + AT_rich Low_complexity Low_complexity 1 23 0 5 1439 225 317 52 92 chr6 112034364 112034517 -37482520 + RMER13B LTR ERVK 587 733 -175 5 1439 219 349 12 0 chr6 112034686 112034772 -37482265 - L2a LINE L2 -250 3176 3090 5 1439 375 23 0 0 chr6 112034977 112035021 -37482016 + (TATG)n Simple_repeat Simple_repeat 2 45 0 5 1439 436 250 0 11 chr6 112035042 112035135 -37481902 + B4A SINE B4 1 92 -200 5 1439 909 200 0 0 chr6 112035181 112035321 -37481716 + B1_Mur2 SINE Alu 1 140 -9 5 1439 416 35 0 34 chr6 112035322 112035381 -37481656 + (TAA)n Simple_repeat Simple_repeat 1 57 0 5 1439 680 35 11 0 chr6 112035628 112035715 -37481322 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 1439 663 273 79 16 chr6 112035793 112035983 -37481054 + B4A SINE B4 86 287 -5 5 1439 219 146 0 0 chr6 112036027 112036068 -37480969 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1439 245 222 79 109 chr6 112036102 112036203 -37480834 - ORR1D2 LTR MaLR 0 379 280 5 1439 278 252 113 66 chr6 112036542 112036648 -37480389 + B4 SINE B4 108 218 -74 6 1439 363 101 0 37 chr6 112036705 112036787 -37480250 + (TGGG)n Simple_repeat Simple_repeat 3 81 0 6 1439 372 283 144 76 chr6 112037474 112037738 -37479299 - B4 SINE B4 -6 286 5 6 1439 30 45 0 0 chr6 112038458 112038502 -37478535 + AT_rich Low_complexity Low_complexity 1 44 0 6 1439 522 0 0 0 chr6 112038607 112038665 -37478372 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1439 455 304 143 19 chr6 112038692 112038950 -37478087 + B4A SINE B4 2 291 -1 6 1439 303 336 19 0 chr6 112039020 112039031 -37478006 + ID SINE ID 70 82 -142 6 1439 392 339 17 0 chr6 112039031 112039146 -37477891 + PB1D10 SINE Alu 1 117 0 6 1439 246 276 5 14 chr6 112039287 112039365 -37477672 - MIR SINE MIR -56 152 71 6 1439 753 12 0 0 chr6 112039674 112039760 -37477277 + (TC)n Simple_repeat Simple_repeat 1 86 0 6 1439 201 308 24 82 chr6 112040185 112040270 -37476767 + MIR SINE MIR 37 116 -92 7 1439 507 191 0 0 chr6 112040953 112041105 -37475932 + CT-rich Low_complexity Low_complexity 2 153 0 7 1439 187 154 0 0 chr6 112041490 112041516 -37475521 - L2b LINE L2 -22 3353 3328 7 1439 1125 276 17 31 chr6 112041918 112042210 -37474827 - MTEb LTR MaLR -85 294 7 7 1439 1029 239 53 5 chr6 112042407 112042613 -37474424 - B3 SINE B2 0 216 1 7 1439 884 242 122 25 chr6 112042718 112042985 -37474052 + ORR1E LTR MaLR 1 272 -87 7 1439 189 94 0 0 chr6 112043228 112043260 -37473777 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1439 506 220 10 0 chr6 112043461 112043561 -37473476 - ORR1D2 LTR MaLR -269 101 1 7 1439 511 261 125 62 chr6 112043738 112043914 -37473123 - MLT1A0 LTR MaLR -16 349 163 7 1439 789 323 80 11 chr6 112044282 112044545 -37472492 + B4A SINE B4 2 282 -10 7 1439 480 86 0 0 chr6 112044547 112044617 -37472420 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1439 407 297 101 101 chr6 112045324 112045535 -37471502 + B4A SINE B4 3 211 -81 8 1439 486 0 0 0 chr6 112045535 112045589 -37471448 + (TA)n Simple_repeat Simple_repeat 2 55 0 8 1439 570 15 0 0 chr6 112045589 112045655 -37471382 + (TG)n Simple_repeat Simple_repeat 2 68 0 8 1439 407 297 101 101 chr6 112045655 112045719 -37471318 + B4A SINE B4 212 278 -14 8 1439 2661 85 18 0 chr6 112046379 112046719 -37470318 - ORR1A1 LTR MaLR 0 346 1 8 1439 705 268 47 34 chr6 112047736 112047972 -37469065 + RMER15 LTR ERVL 337 575 0 8 1439 687 69 0 0 chr6 112048764 112048866 -37468171 + (TC)n Simple_repeat Simple_repeat 2 103 0 8 1439 859 269 56 48 chr6 112049239 112049617 -37467420 + L1M2 LINE L1 4494 4874 -1269 8 1439 213 194 13 141 chr6 112049633 112049711 -37467326 + RSINE1 SINE B4 98 165 0 8 1439 2624 42 0 21 chr6 112049988 112050328 -37466709 - IAPEY2_LTR LTR ERVK -3 354 22 8 1439 909 293 58 29 chr6 112050527 112050805 -37466232 - MTEa LTR MaLR 0 379 94 9 1439 1328 108 10 15 chr6 112050856 112051089 -37465948 - L1_Mus3 LINE L1 0 6638 6439 9 1439 2169 115 26 0 chr6 112051091 112051404 -37465633 + L1_Mm LINE L1 5220 5540 -343 9 1439 942 257 133 37 chr6 112051480 112051856 -37465181 + MLT2D LTR ERVL 3 414 0 9 1439 197 254 109 16 chr6 112052413 112052477 -37464560 + MIR3 SINE MIR 87 156 -52 9 1439 277 275 99 90 chr6 112053145 112053357 -37463680 - RMER10B LTR ERVL -10 388 175 9 1439 827 317 22 47 chr6 112053477 112053752 -37463285 + B4 SINE B4 2 269 -23 9 1439 501 17 0 0 chr6 112053752 112053810 -37463227 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1439 560 288 82 6 chr6 112053992 112054163 -37462874 - Lx8 LINE L1 -220 7253 7070 9 1439 234 231 0 58 chr6 112054175 112054244 -37462793 - Lx9 LINE L1 -496 7148 7084 9 1439 657 312 87 83 chr6 112054585 112055113 -37461924 - RMER13A LTR ERVK -301 559 30 1 1439 34 65 0 0 chr6 112055194 112055256 -37461781 + AT_rich Low_complexity Low_complexity 1 62 0 1 1439 308 307 244 26 chr6 112056194 112056428 -37460609 + B4A SINE B4 2 286 -6 1 1439 261 303 181 7 chr6 112056455 112056671 -37460366 - L2a LINE L2 -275 3151 2896 1 1439 343 353 6 57 chr6 112056892 112057051 -37459986 + MER58A DNA MER1_type 60 210 -14 1 1439 564 232 171 14 chr6 112057666 112057806 -37459231 - RSINE1 SINE B4 -2 163 2 1 1439 198 390 28 21 chr6 112059002 112059146 -37457891 - L2b LINE L2 -1 3374 3230 1 1439 586 303 47 21 chr6 112059192 112059363 -37457674 + B3A SINE B2 2 181 -17 1 1439 521 88 12 0 chr6 112059363 112059443 -37457594 + (CATA)n Simple_repeat Simple_repeat 4 84 0 1 1439 586 303 47 21 chr6 112059443 112059463 -37457574 + B3A SINE B2 182 197 -1 1 1439 292 258 50 20 chr6 112060331 112060430 -37456607 - MLT1H2 LTR MaLR -308 181 80 1 1439 528 155 62 0 chr6 112060441 112060538 -37456499 - MTC LTR MaLR 0 421 319 1 1439 1761 36 5 5 chr6 112060551 112060773 -37456264 + L1Md_F3 LINE L1 6362 6583 -1 1 1439 353 354 20 0 chr6 112060799 112060898 -37456139 - B3 SINE B2 -96 120 20 1 1439 1670 187 13 7 chr6 112060895 112061217 -37455820 - MTC LTR MaLR -82 297 1 1 1439 743 21 11 0 chr6 112061585 112061678 -37455359 + (TC)n Simple_repeat Simple_repeat 1 94 0 1 1439 216 0 0 0 chr6 112061678 112061702 -37455335 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1439 544 281 85 0 chr6 112061712 112061865 -37455172 + MER5A1 DNA MER1_type 1 166 0 1 1439 410 327 44 13 chr6 112062446 112062604 -37454433 + RSINE1 SINE B4 2 164 -1 1 1439 456 313 57 63 chr6 112062639 112063147 -37453890 + L1_Rod LINE L1 5176 5680 -167 1 1439 276 344 67 94 chr6 112063450 112063630 -37453407 - MLT1N2 LTR MaLR -383 179 5 1 1439 781 278 29 5 chr6 112063635 112063845 -37453192 + ID_B1 SINE B4 3 217 -7 1 1439 206 273 0 0 chr6 112066331 112066375 -37450662 + C-rich Low_complexity Low_complexity 2 45 0 1 1439 234 0 0 0 chr6 112066381 112066407 -37450630 + (CAT)n Simple_repeat Simple_repeat 2 27 0 1 1440 441 0 0 0 chr6 112067461 112067510 -37449527 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1440 699 150 119 0 chr6 112067659 112067707 -37449330 + Lx2 LINE L1 6819 6866 -131 1 1440 189 0 0 0 chr6 112067707 112067728 -37449309 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 1 1440 699 150 119 0 chr6 112067728 112067839 -37449198 + Lx2 LINE L1 6867 6995 -2 1 1440 182 360 58 39 chr6 112068129 112068233 -37448804 - L2a LINE L2 -29 3397 3292 1 1440 1073 293 12 8 chr6 112068264 112068512 -37448525 + B4A SINE B4 5 253 -39 1 1440 3177 75 0 12 chr6 112068525 112068957 -37448080 + L1Md_F2 LINE L1 6148 6574 -8 1 1440 520 252 43 14 chr6 112069242 112069383 -37447654 + B2_Mm2 SINE B2 1 145 -50 1 1440 1659 244 154 8 chr6 112069479 112069958 -37447079 + RMER15 LTR ERVL 27 575 0 1 1440 235 270 16 0 chr6 112069958 112070014 -37447023 + B3 SINE B2 154 210 -6 1 1440 354 241 48 95 chr6 112070662 112070809 -37446228 - MLT1J LTR MaLR -329 183 44 1 1440 393 123 0 0 chr6 112070970 112071035 -37446002 + (TTG)n Simple_repeat Simple_repeat 2 66 0 1 1440 294 406 38 45 chr6 112071324 112071724 -37445313 + L2a LINE L2 3030 3426 0 1 1440 1742 163 84 39 chr6 112071805 112072163 -37444874 - ORR1D1 LTR MaLR 0 374 1 1 1440 201 319 0 0 chr6 112072315 112072362 -37444675 + MER5A DNA MER1_type 125 171 -18 1 1440 250 298 68 47 chr6 112072465 112072655 -37444382 - YREP_Mm Unknown Unknown -1433 379 186 1 1440 472 260 104 16 chr6 112072532 112072657 -37444380 + ID_B1 SINE B4 82 217 -7 1 1440 478 299 68 0 chr6 112072720 112072837 -37444200 - B1F1 SINE Alu -5 144 20 1 1440 316 250 101 62 chr6 112072920 112073099 -37443938 - L1MA5 LINE L1 -7 6293 6105 1 1440 402 265 28 90 chr6 112073225 112073401 -37443636 - ORR1E LTR MaLR -2 417 211 1 1440 306 98 0 0 chr6 112073401 112073452 -37443585 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 1440 254 295 0 13 chr6 112073463 112073542 -37443495 + GA-rich Low_complexity Low_complexity 2 79 0 1 1440 535 307 16 49 chr6 112073543 112073728 -37443309 - ORR1E LTR MaLR -168 191 13 1 1440 1558 196 77 27 chr6 112073728 112074064 -37442973 + ORR1D1 LTR MaLR 1 353 -21 1 1440 281 170 0 0 chr6 112074196 112074243 -37442794 + MIRc SINE MIR 109 155 -113 1 1440 432 191 0 56 chr6 112074281 112074370 -37442667 + B4 SINE B4 2 85 -207 1 1440 1193 300 85 0 chr6 112074376 112074836 -37442201 + Lx8 LINE L1 6564 7062 -411 1 1440 1120 82 0 7 chr6 112074850 112074998 -37442039 + B1_Mus2 SINE Alu 1 147 0 1 1440 238 309 48 102 chr6 112075012 112075178 -37441859 + B4A SINE B4 65 221 -71 1 1440 739 136 0 8 chr6 112075066 112075185 -37441852 + B1_Mus2 SINE Alu 30 147 0 1 1440 297 0 0 0 chr6 112075185 112075218 -37441819 + (CAAAAA)n Simple_repeat Simple_repeat 6 38 0 1 1440 608 188 0 0 chr6 112075271 112075372 -37441665 + B1_Mus2 SINE Alu 30 130 -17 1 1440 620 299 108 25 chr6 112075389 112075667 -37441370 + Lx8 LINE L1 7163 7463 -10 1 1440 883 218 69 58 chr6 112075678 112075899 -37441138 + B4 SINE B4 83 292 0 1 1440 206 111 0 53 chr6 112075908 112075946 -37441091 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 1 1440 3632 2 0 0 chr6 112075958 112076381 -37440656 + L1Md_A LINE L1 5164 5586 -297 1 1440 9062 3 0 0 chr6 112076381 112077377 -37439660 + L1Md_A LINE L1 5587 6582 0 1 1440 612 301 111 11 chr6 112078426 112078550 -37438487 + B4 SINE B4 3 124 -168 1 1440 630 0 0 0 chr6 112078550 112078620 -37438417 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1440 612 301 111 11 chr6 112078620 112078757 -37438280 + B4 SINE B4 125 289 -3 1 1440 252 170 0 0 chr6 112078786 112078839 -37438198 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1440 387 278 58 42 chr6 112078994 112079114 -37437923 - B1F SINE Alu -26 123 2 1 1440 243 359 123 19 chr6 112079522 112079684 -37437353 + MER117 DNA MER1_type 3 181 -16 1 1440 251 317 8 8 chr6 112080335 112080459 -37436578 - L1MD LINE L1 -1926 4220 4097 1 1440 222 37 0 0 chr6 112080466 112080493 -37436544 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1440 945 335 117 62 chr6 112080546 112081543 -37435494 + L2a LINE L2 2183 3251 -175 1 1440 1031 287 54 56 chr6 112081868 112082241 -37434796 - MTE2a LTR MaLR -7 372 1 1 1440 371 350 22 0 chr6 112082279 112082416 -37434621 + L2a LINE L2 3286 3425 -1 1 1440 22 35 0 0 chr6 112082958 112082987 -37434050 + AT_rich Low_complexity Low_complexity 1 29 0 1 1440 1065 253 123 14 chr6 112083070 112083363 -37433674 + MTEa LTR MaLR 18 342 -37 1 1440 836 212 82 16 chr6 112083631 112083813 -37433224 - B3A SINE B2 -4 194 1 1 1440 260 348 22 11 chr6 112084380 112084470 -37432567 + B4A SINE B4 14 104 -188 1 1440 249 314 0 0 chr6 112084596 112084647 -37432390 + RSINE1 SINE B4 108 158 -7 1 1440 547 171 16 8 chr6 112084661 112084785 -37432252 + (CAGAGA)n Simple_repeat Simple_repeat 2 126 0 1 1440 319 195 162 59 chr6 112085779 112085915 -37431122 + L1ME1 LINE L1 678 827 -5573 1 1440 245 284 86 14 chr6 112086225 112086446 -37430591 + L1ME1 LINE L1 1287 1523 -4877 1 1440 355 260 90 122 chr6 112086472 112086775 -37430262 + L1ME1 LINE L1 1637 1910 -4505 1 1440 674 289 45 4 chr6 112086932 112087111 -37429926 - B3A SINE B2 0 216 29 1 1440 4984 56 0 2 chr6 112087111 112087733 -37429304 - L1Md_F2 LINE L1 -14 6568 5948 1 1440 674 286 41 0 chr6 112087733 112087759 -37429278 - B3A SINE B2 -170 28 3 1 1440 304 320 65 4 chr6 112087767 112088015 -37429022 + L1ME1 LINE L1 2077 2339 -4061 1 1440 352 296 61 42 chr6 112088111 112088527 -37428510 + L1ME1 LINE L1 2423 2843 -3476 1 1440 527 245 131 16 chr6 112088774 112088965 -37428072 + B3 SINE B2 4 216 0 1 1440 368 263 0 0 chr6 112089164 112089240 -37427797 + ID_B1 SINE B4 144 219 -5 1 1440 561 304 41 12 chr6 112089276 112089446 -37427591 + ID_B1 SINE B4 47 221 -3 1 1440 851 297 92 48 chr6 112089448 112089642 -37427395 + L1ME1 LINE L1 5473 5674 -678 1 1440 4026 75 24 4 chr6 112089642 112090181 -37426856 + L1_Mus1 LINE L1 6018 6567 0 1 1440 851 297 92 48 chr6 112090181 112090639 -37426398 + L1ME1 LINE L1 5675 6154 -198 1 1440 384 22 0 0 chr6 112091103 112091148 -37425889 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1 1440 258 317 12 0 chr6 112091619 112091701 -37425336 + MLT1A0 LTR MaLR 238 320 -45 1 1440 1335 234 29 0 chr6 112091793 112092067 -37424970 + RMER15 LTR ERVL 291 572 -3 1 1440 991 125 6 11 chr6 112092394 112092572 -37424465 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 1 1440 298 299 30 3 chr6 112092613 112092747 -37424290 + Kanga1a DNA Tc2 643 751 -3 1 1440 449 342 16 37 chr6 112093857 112094045 -37422992 + MER58A DNA MER1_type 27 210 -14 1 1440 678 283 84 36 chr6 112094775 112095050 -37421987 + B4A SINE B4 5 292 0 1 1440 186 189 0 0 chr6 112096013 112096050 -37420987 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1440 484 283 113 11 chr6 112096083 112096397 -37420640 - L1MA4 LINE L1 -372 5928 5543 1 1440 533 279 39 13 chr6 112096385 112096617 -37420420 + L1M2 LINE L1 4371 4608 -1535 1 1440 405 246 36 16 chr6 112096672 112096795 -37420242 - B4A SINE B4 -29 136 6 1 1440 1812 216 16 3 chr6 112096838 112097215 -37419822 - RLTR14 LTR ERV1 0 382 1 1 1440 306 313 161 58 chr6 112097239 112097500 -37419537 + MLT1K LTR MaLR 144 431 -164 1 1440 638 246 164 39 chr6 112097576 112097881 -37419156 - ORR1E LTR MaLR -2 357 15 1 1440 684 100 0 0 chr6 112099006 112099126 -37417911 + (TC)n Simple_repeat Simple_repeat 1 120 0 1 1440 405 102 0 0 chr6 112099126 112099185 -37417852 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1440 2188 160 0 41 chr6 112099258 112099669 -37417368 - Lx LINE L1 -8 6646 6253 1 1440 348 24 0 0 chr6 112100313 112100354 -37416683 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1440 28 29 0 0 chr6 112101005 112101040 -37415997 + AT_rich Low_complexity Low_complexity 1 35 0 1 1440 267 31 0 0 chr6 112101123 112101155 -37415882 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1440 306 277 4 12 chr6 112101169 112101427 -37415610 + (TCCA)n Simple_repeat Simple_repeat 1 255 0 1 1440 224 186 0 17 chr6 112101501 112101561 -37415476 + (CATA)n Simple_repeat Simple_repeat 1 59 0 1 1440 323 291 10 10 chr6 112101565 112101669 -37415368 + (TCCA)n Simple_repeat Simple_repeat 4 107 0 1 1440 24 0 0 0 chr6 112102323 112102347 -37414690 + AT_rich Low_complexity Low_complexity 1 24 0 2 1440 306 219 51 20 chr6 112102354 112102452 -37414585 - Lx8 LINE L1 -12 7461 7361 2 1440 308 130 14 0 chr6 112102452 112102521 -37414516 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 1440 555 258 98 49 chr6 112102521 112102745 -37414292 - Lx8 LINE L1 -149 7324 7090 2 1440 353 236 45 4 chr6 112103491 112103759 -37413278 + CT-rich Low_complexity Low_complexity 1 279 0 2 1440 246 0 114 0 chr6 112103875 112103919 -37413118 + (CACCC)n Simple_repeat Simple_repeat 3 51 0 2 1440 243 0 0 0 chr6 112104021 112104048 -37412989 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1440 613 257 186 12 chr6 112105166 112105482 -37411555 + MTE2b LTR MaLR 5 375 -4 2 1440 414 0 0 0 chr6 112105764 112105810 -37411227 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1440 27 29 0 0 chr6 112105873 112105907 -37411130 + AT_rich Low_complexity Low_complexity 1 34 0 2 1440 450 0 0 0 chr6 112106674 112106724 -37410313 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1440 1015 259 55 77 chr6 112107434 112107798 -37409239 + MTE2b LTR MaLR 5 360 -19 2 1440 290 138 0 17 chr6 112107983 112108042 -37408995 + (TTA)n Simple_repeat Simple_repeat 2 59 0 2 1440 835 221 58 0 chr6 112108046 112108236 -37408801 - B3 SINE B2 -15 201 1 2 1440 1046 278 63 22 chr6 112108344 112108708 -37408329 - MTEb LTR MaLR 0 379 1 2 1440 360 0 0 0 chr6 112108842 112108882 -37408155 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1440 294 206 0 0 chr6 112109469 112109532 -37407505 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1440 510 257 114 7 chr6 112110244 112110393 -37406644 - MER58A DNA MER1_type -8 216 52 2 1440 662 228 4 0 chr6 112110815 112111048 -37405989 + (CAGAGA)n Simple_repeat Simple_repeat 1 234 0 2 1440 380 322 78 50 chr6 112111048 112111102 -37405935 + L1M5 LINE L1 5294 5347 -826 2 1440 510 17 0 0 chr6 112111102 112111161 -37405876 + (CATA)n Simple_repeat Simple_repeat 2 60 0 2 1440 380 322 78 50 chr6 112111161 112111387 -37405650 + L1M5 LINE L1 5348 5582 -591 2 1440 294 336 179 27 chr6 112111616 112111879 -37405158 + MLT1A0 LTR MaLR 26 328 -37 2 1440 322 307 74 53 chr6 112111962 112112151 -37404886 + MLT-int LTR MaLR 1543 1735 0 2 1440 587 168 0 8 chr6 112112786 112112906 -37404131 + (CA)n Simple_repeat Simple_repeat 2 120 0 2 1440 790 270 32 0 chr6 112113382 112113571 -37403466 + B4 SINE B4 94 288 -4 2 1440 21 0 0 0 chr6 112114946 112114967 -37402070 + AT_rich Low_complexity Low_complexity 1 21 0 2 1440 304 246 15 0 chr6 112115836 112115901 -37401136 - PB1D9 SINE Alu -54 66 1 2 1440 467 351 23 60 chr6 112115996 112116214 -37400823 + MLT2D LTR ERVL 50 259 -155 2 1440 1206 316 68 58 chr6 112117391 112117939 -37399098 + MER77 LTR ERVL 40 592 -15 2 1440 555 244 46 0 chr6 112118815 112118946 -37398091 + RSINE1 SINE B4 4 140 -25 2 1440 357 24 0 0 chr6 112118959 112119001 -37398036 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1440 183 80 0 0 chr6 112119004 112119029 -37398008 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2 1440 432 308 82 16 chr6 112119526 112119770 -37397267 + Tigger5 DNA MER2_type 2146 2405 -1 2 1440 255 348 40 108 chr6 112119829 112120080 -37396957 - MLT2B1 LTR ERVL -168 352 119 2 1440 438 20 0 0 chr6 112120177 112120228 -37396809 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1440 324 302 48 75 chr6 112120880 112121066 -37395971 - LTR33A_ LTR ERVL -320 211 31 2 1440 816 237 138 34 chr6 112121207 112121562 -37395475 - MTD LTR MaLR -14 407 8 2 1440 322 342 39 19 chr6 112121834 112121989 -37395048 + RSINE1 SINE B4 4 161 -4 2 1440 347 185 12 36 chr6 112122781 112122865 -37394172 - Lx9 LINE L1 -157 7487 7406 2 1440 255 161 179 0 chr6 112123640 112123696 -37393341 + MTEa LTR MaLR 259 324 -55 2 1440 228 271 0 0 chr6 112124111 112124159 -37392878 - ID4 SINE ID 0 83 36 2 1440 326 80 20 0 chr6 112124651 112124701 -37392336 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 2 1440 357 287 19 0 chr6 112125144 112125252 -37391785 - MTD LTR MaLR -229 190 81 2 1440 949 262 123 19 chr6 112125293 112125659 -37391378 - MLT1A1 LTR MaLR 0 408 5 2 1440 198 0 0 0 chr6 112126394 112126416 -37390621 + (CCCCCA)n Simple_repeat Simple_repeat 4 25 0 2 1440 670 269 98 36 chr6 112127177 112127401 -37389636 + MTEa LTR MaLR 34 271 -108 2 1440 2604 108 126 21 chr6 112127420 112127856 -37389181 + RLTR45 LTR ERVK 1 482 0 2 1440 511 249 32 0 chr6 112127874 112128025 -37389012 + MTEa LTR MaLR 254 418 -1 2 1440 976 153 0 6 chr6 112128139 112128297 -37388740 + Lx6 LINE L1 7296 7452 -8 2 1440 309 245 41 31 chr6 112128426 112128523 -37388514 - L1ME3A LINE L1 -71 6102 6005 2 1440 465 161 0 0 chr6 112128646 112128733 -37388304 + (CA)n Simple_repeat Simple_repeat 1 87 0 2 1440 257 278 22 11 chr6 112128769 112128860 -37388177 + (CA)n Simple_repeat Simple_repeat 2 93 0 2 1440 36113 47 1 3 chr6 112129530 112134829 -37382208 + L1Md_T LINE L1 207 5589 -297 2 1440 8609 32 1 0 chr6 112134829 112135824 -37381213 + L1Md_T LINE L1 5590 6585 0 2 1440 561 322 125 23 chr6 112136487 112136878 -37380159 + MLT1F-int LTR MaLR 58 488 -1001 2 1440 891 28 0 0 chr6 112136878 112136984 -37380053 + (GAA)n Simple_repeat Simple_repeat 2 107 0 2 1440 536 340 112 46 chr6 112136984 112137099 -37379938 + MLT1F-int LTR MaLR 606 712 -659 2 1440 511 220 0 0 chr6 112137234 112137334 -37379703 + MTEa LTR MaLR 2 101 -278 2 1440 741 200 23 35 chr6 112137340 112137511 -37379526 - MTB_Mm LTR MaLR 0 407 239 2 1440 284 375 52 4 chr6 112137707 112137940 -37379097 + MARNA DNA Mariner 108 351 -235 2 1440 380 278 18 29 chr6 112138420 112138559 -37378478 + L2a LINE L2 2962 3103 -323 2 1440 289 361 38 8 chr6 112139201 112139332 -37377705 + B3A SINE B2 48 182 -16 2 1440 332 312 0 0 chr6 112139332 112139425 -37377612 + (CA)n Simple_repeat Simple_repeat 1 93 0 2 1440 405 58 0 0 chr6 112139825 112139877 -37377160 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1440 670 222 15 0 chr6 112139890 112140025 -37377012 + B1_Mur1 SINE Alu 12 148 -1 2 1440 242 56 0 27 chr6 112140027 112140064 -37376973 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 2 1440 4275 194 58 18 chr6 112141501 112142447 -37374590 + Lx6 LINE L1 4860 5843 -37 2 1440 2288 52 26 3 chr6 112142451 112142763 -37374274 - IAPLTR2b LTR ERVK -8 319 1 2 1440 5969 239 64 42 chr6 112142763 112144045 -37372992 + Lx6 LINE L1 5840 7193 -267 2 1440 1958 104 33 23 chr6 112144045 112144351 -37372686 + RLTR27 LTR ERVK 1 309 0 2 1440 5969 239 64 42 chr6 112144351 112144640 -37372397 + Lx6 LINE L1 7194 7445 -15 2 1440 227 167 0 0 chr6 112145931 112145973 -37371064 + RMER5 LTR ERV1 481 522 -12 2 1440 413 245 86 33 chr6 112145981 112146133 -37370904 - MER2 DNA MER2_type -175 170 11 2 1440 426 250 84 19 chr6 112146129 112146284 -37370753 - RMER5 LTR ERV1 -55 479 315 2 1440 28 61 0 0 chr6 112146892 112146941 -37370096 + AT_rich Low_complexity Low_complexity 1 49 0 2 1440 258 253 36 12 chr6 112147648 112147732 -37369305 + LTR41 LTR ERVL 118 203 -565 2 1440 939 179 0 0 chr6 112148017 112148196 -37368841 + CT-rich Low_complexity Low_complexity 2 180 0 2 1440 1165 304 91 32 chr6 112148799 112149296 -37367741 + MT2A LTR ERVL 1 526 -7 2 1440 352 267 18 114 chr6 112150163 112150391 -37366646 - B4 SINE B4 -84 208 3 2 1440 228 211 11 0 chr6 112150516 112150573 -37366464 + MIRc SINE MIR 100 155 -113 2 1440 986 246 119 36 chr6 112151340 112151412 -37365625 - ORR1D2 LTR MaLR 0 370 303 2 1440 414 0 0 0 chr6 112151412 112151458 -37365579 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 2 1440 986 246 119 36 chr6 112151458 112151722 -37365315 - ORR1D2 LTR MaLR -68 302 6 2 1440 216 97 0 0 chr6 112151747 112151778 -37365259 + (CTG)n Simple_repeat Simple_repeat 2 32 0 2 1440 215 304 29 10 chr6 112152000 112152103 -37364934 - MIRc SINE MIR -116 152 48 2 1440 228 292 0 27 chr6 112152439 112152513 -37364524 + RMER30 DNA MER1_type 20 91 -111 2 1440 1016 279 14 57 chr6 112152530 112152827 -37364210 + B4 SINE B4 9 292 0 2 1440 189 213 0 0 chr6 112152827 112152874 -37364163 + (CATA)n Simple_repeat Simple_repeat 1 47 0 2 1440 660 26 0 0 chr6 112153955 112154033 -37363004 + (GA)n Simple_repeat Simple_repeat 2 79 0 2 1440 246 32 0 0 chr6 112154444 112154475 -37362562 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1440 728 316 10 0 chr6 112154485 112154681 -37362356 + B4 SINE B4 94 291 -1 2 1440 180 0 0 0 chr6 112154684 112154704 -37362333 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1440 540 237 22 15 chr6 112154870 112155007 -37362030 + ORR1D2 LTR MaLR 233 370 0 2 1440 4205 169 97 16 chr6 112155507 112155967 -37361070 + RMER13B LTR ERVK 4 494 -414 2 1440 186 71 0 0 chr6 112155967 112155995 -37361042 + (CAGCC)n Simple_repeat Simple_repeat 5 32 0 2 1440 4205 169 97 16 chr6 112155995 112156369 -37360668 + RMER13B LTR ERVK 495 906 -2 2 1440 444 281 8 23 chr6 112156872 112157003 -37360034 + B4 SINE B4 164 292 0 2 1440 241 135 39 0 chr6 112157004 112157056 -37359981 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1440 616 113 35 0 chr6 112158042 112158150 -37358887 - B3A SINE B2 -95 121 1 2 1440 788 310 38 18 chr6 112158172 112158551 -37358486 - L1MA7 LINE L1 -279 6021 5647 2 1440 810 228 64 5 chr6 112158784 112158987 -37358050 + B3 SINE B2 2 216 0 2 1440 408 261 61 83 chr6 112159118 112159348 -37357689 + RMER15 LTR ERVL 333 557 -18 2 1440 758 217 69 0 chr6 112159870 112160073 -37356964 + MER33 DNA MER1_type 55 271 -53 2 1440 714 268 23 6 chr6 112161059 112161232 -37355805 + B3 SINE B2 30 205 -11 2 1440 295 23 0 43 chr6 112161235 112161281 -37355756 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1440 306 0 0 0 chr6 112162042 112162076 -37354961 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1440 367 252 19 48 chr6 112162099 112162203 -37354834 - PB1D10 SINE Alu 0 117 17 2 1440 666 240 45 11 chr6 112162626 112162803 -37354234 + B3A SINE B2 1 183 -15 2 1440 642 26 0 0 chr6 112163445 112163521 -37353516 + (CTGGGG)n Simple_repeat Simple_repeat 3 78 0 2 1440 870 330 7 51 chr6 112164440 112164715 -37352322 + B4A SINE B4 30 292 0 3 1440 209 243 26 18 chr6 112164715 112164828 -37352209 + (CATA)n Simple_repeat Simple_repeat 1 114 0 3 1440 246 307 11 0 chr6 112165050 112165138 -37351899 - MLT1N2 LTR MaLR 0 562 474 3 1440 259 329 102 0 chr6 112165370 112165507 -37351530 + MER20 DNA MER1_type 1 151 -68 3 1440 921 212 14 50 chr6 112165965 112166183 -37350854 - ID_B1 SINE B4 -9 215 6 3 1440 509 286 274 18 chr6 112166884 112167115 -37349922 - B4 SINE B4 0 292 3 3 1440 824 292 16 12 chr6 112167521 112167767 -37349270 - MER2 DNA MER2_type 0 345 99 3 1440 233 328 8 57 chr6 112168857 112168980 -37348057 + MLT1A1 LTR MaLR 1 117 -291 3 1440 184 170 19 19 chr6 112169363 112169417 -37347620 + GA-rich Low_complexity Low_complexity 2 55 0 3 1440 272 295 63 32 chr6 112169435 112169561 -37347476 - MIRb SINE MIR -14 254 125 3 1440 359 288 24 68 chr6 112170336 112170536 -37346501 + MLT1A1 LTR MaLR 161 402 -6 3 1440 375 41 0 0 chr6 112171696 112171745 -37345292 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1440 718 245 83 0 chr6 112172219 112172435 -37344602 - ORR1D2 LTR MaLR 0 370 137 3 1440 490 267 47 23 chr6 112172590 112172767 -37344270 - B3A SINE B2 -6 189 1 3 1440 351 324 33 22 chr6 112172940 112173120 -37343917 + MIRb SINE MIR 20 201 -67 3 1440 184 273 0 0 chr6 112173176 112173220 -37343817 + L2a LINE L2 3378 3421 -5 3 1440 201 200 0 86 chr6 112176660 112176846 -37340191 + GA-rich Low_complexity Low_complexity 1 170 0 3 1440 878 192 166 0 chr6 112177149 112177342 -37339695 + URR1B DNA MER1_type 1 225 0 3 1440 1260 203 218 19 chr6 112177894 112178175 -37338862 + Lx9 LINE L1 7198 7543 -101 3 1440 450 0 0 0 chr6 112178175 112178225 -37338812 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1440 1260 203 218 19 chr6 112178225 112178315 -37338722 + Lx9 LINE L1 7544 7642 -2 3 1440 22 0 0 0 chr6 112178322 112178344 -37338693 + AT_rich Low_complexity Low_complexity 1 22 0 3 1440 599 283 131 96 chr6 112178524 112178899 -37338138 + MTD LTR MaLR 18 405 -14 3 1440 200 304 14 0 chr6 112180286 112180355 -37336682 + MIRb SINE MIR 57 126 -142 3 1440 1036 294 40 0 chr6 112180381 112180657 -37336380 + B4 SINE B4 2 288 -4 3 1440 256 324 66 102 chr6 112180788 112181032 -37336005 - ORR1E LTR MaLR -35 324 90 3 1440 954 269 126 30 chr6 112181133 112181505 -37335532 - MTD LTR MaLR 0 419 12 3 1440 397 0 0 36 chr6 112181793 112181848 -37335189 + (GTGTG)n Simple_repeat Simple_repeat 1 53 0 3 1440 358 239 0 111 chr6 112181856 112181955 -37335082 - B4 SINE B4 0 292 205 3 1440 304 256 62 21 chr6 112181969 112182153 -37334884 + ORR1D2 LTR MaLR 7 204 -180 3 1440 2150 189 103 20 chr6 112182469 112182976 -37334061 + RMER15 LTR ERVL 27 575 0 3 1440 586 285 0 0 chr6 112183664 112183801 -37333236 - ID_B1 SINE B4 0 224 88 3 1440 404 211 121 8 chr6 112184133 112184177 -37332860 - AmnSINE1 SINE SINE -437 138 1 3 1440 534 62 125 0 chr6 112184177 112184257 -37332780 - 5S rRNA rRNA -31 90 1 3 1440 182 254 119 0 chr6 112184483 112184550 -37332487 + L2a LINE L2 3261 3335 -91 3 1440 336 345 32 78 chr6 112184651 112184805 -37332232 + B1F SINE Alu 3 149 0 3 1440 702 16 0 68 chr6 112184827 112184960 -37332077 + (AGGGGG)n Simple_repeat Simple_repeat 3 126 0 3 1440 576 0 0 0 chr6 112184960 112185024 -37332013 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 3 1440 326 107 48 0 chr6 112185400 112185470 -37331567 - B1_Mus1 SINE Alu -35 85 7 3 1440 1575 246 19 12 chr6 112186726 112187138 -37329899 - MTD LTR MaLR 0 419 5 3 1440 214 350 89 8 chr6 112187327 112187451 -37329586 - MIRb SINE MIR -103 165 32 3 1440 2303 134 50 57 chr6 112187576 112188051 -37328986 - IAPLTR2_Mm LTR ERVK -3 472 1 3 1440 21343 17 2 0 chr6 112188051 112190405 -37326632 - IAPEz-int LTR ERVK 0 6481 4123 3 1440 953 80 24 0 chr6 112190407 112190532 -37326505 - IAPEz-int LTR ERVK -2770 4910 4783 3 1440 1863 115 4 4 chr6 112190527 112190789 -37326248 - IAPEz-int LTR ERVK -5183 2497 2236 3 1440 454 66 0 32 chr6 112190778 112190841 -37326196 - IAPEz-int LTR ERVK -5062 1419 1359 3 1440 4532 58 65 43 chr6 112190841 112191488 -37325549 - IAPEz-int LTR ERVK -5819 662 2 3 1440 2303 134 50 57 chr6 112191488 112191963 -37325074 - IAPLTR2_Mm LTR ERVK -3 472 1 3 1440 351 0 0 0 chr6 112192021 112192060 -37324977 + (CATA)n Simple_repeat Simple_repeat 2 40 0 3 1440 410 0 20 0 chr6 112192736 112192786 -37324251 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1440 2912 79 53 0 chr6 112192954 112193419 -37323618 + L1_Mus4 LINE L1 6210 6636 0 3 1440 1183 94 0 11 chr6 112193421 112193603 -37323434 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3 1440 205 182 0 0 chr6 112193603 112193636 -37323401 + polypurine Low_complexity Low_complexity 1 33 0 3 1440 625 228 29 7 chr6 112194701 112194838 -37322199 - B4A SINE B4 0 292 153 3 1440 488 305 34 28 chr6 112194867 112195046 -37321991 - B4A SINE B4 -107 185 6 3 1440 360 0 0 0 chr6 112195104 112195144 -37321893 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1440 229 270 216 0 chr6 112195254 112195365 -37321672 - MIRb SINE MIR -72 196 62 3 1440 459 306 79 79 chr6 112196157 112196288 -37320749 + B4 SINE B4 2 126 -166 3 1440 627 14 0 0 chr6 112196288 112196360 -37320677 + (CATAT)n Simple_repeat Simple_repeat 4 75 0 3 1440 459 291 55 55 chr6 112196360 112196535 -37320502 + B4 SINE B4 83 292 0 3 1440 228 163 0 0 chr6 112196617 112196660 -37320377 + GA-rich Low_complexity Low_complexity 3 45 0 3 1440 234 0 0 0 chr6 112197144 112197170 -37319867 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1440 518 277 145 0 chr6 112197182 112197341 -37319696 + B3A SINE B2 2 183 -15 3 1440 180 0 0 0 chr6 112197396 112197416 -37319621 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 22 1918 216 10 10 chr6 112197464 112197875 -37319162 - MTD LTR MaLR -8 411 1 3 1441 189 0 0 0 chr6 112197904 112197925 -37319112 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1441 996 286 16 62 chr6 112197963 112198269 -37318768 - B4A SINE B4 0 292 1 3 1441 419 262 195 41 chr6 112198506 112198773 -37318264 - MLT1D LTR MaLR -8 497 190 3 1441 251 67 44 0 chr6 112199137 112199182 -37317855 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 3 1441 364 280 17 86 chr6 112199658 112199775 -37317262 + MER81 DNA AcHobo 2 110 -4 3 1441 627 234 58 17 chr6 112199789 112199963 -37317074 - MER115 DNA Tip100 0 693 513 3 1441 1115 209 117 7 chr6 112200697 112200971 -37316066 - MTD LTR MaLR -8 411 108 3 1441 18740 40 5 12 chr6 112200972 112204086 -37312951 + L1Md_A LINE L1 376 3463 -2420 3 1441 306 27 0 0 chr6 112204080 112204117 -37312920 - L1_Mm LINE L1 -807 5076 5040 3 1441 837 11 0 0 chr6 112204110 112204201 -37312836 + L1Md_T LINE L1 6168 6258 -324 3 1441 209 340 96 40 chr6 112204209 112204408 -37312629 + MIR SINE MIR 17 226 -36 3 1441 500 256 95 24 chr6 112204692 112204860 -37312177 + B4 SINE B4 101 280 -12 3 1441 378 0 0 0 chr6 112204870 112204912 -37312125 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1441 549 30 0 0 chr6 112205347 112205414 -37311623 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1441 285 272 167 8 chr6 112205941 112206067 -37310970 + MIRb SINE MIR 117 262 -6 3 1441 1038 243 12 55 chr6 112207807 112208064 -37308973 - B4 SINE B4 -44 248 3 3 1441 222 37 0 0 chr6 112208573 112208600 -37308437 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1441 357 262 57 26 chr6 112209051 112209205 -37307832 - MTD LTR MaLR -24 395 223 3 1441 309 227 94 192 chr6 112209217 112209430 -37307607 - MTD LTR MaLR -120 239 48 3 1441 581 311 61 29 chr6 112209941 112210219 -37306818 + B4 SINE B4 2 288 -4 3 1441 351 0 0 0 chr6 112210345 112210384 -37306653 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1441 285 167 0 0 chr6 112210384 112210438 -37306599 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1441 212 267 67 0 chr6 112210544 112210604 -37306433 + MIR SINE MIR 49 112 -150 3 1441 740 281 168 22 chr6 112210609 112210973 -37306064 + MTD LTR MaLR 1 417 -2 3 1441 402 306 23 39 chr6 112211730 112211859 -37305178 + RSINE1 SINE B4 3 129 -36 3 1441 180 176 0 0 chr6 112211897 112211931 -37305106 + GA-rich Low_complexity Low_complexity 2 35 0 3 1441 222 305 0 0 chr6 112211977 112212036 -37305001 + G-rich Low_complexity Low_complexity 2 60 0 3 1441 383 181 39 72 chr6 112212134 112212253 -37304784 + MLT1A1 LTR MaLR 245 402 -6 3 1441 293 296 0 0 chr6 112212667 112212748 -37304289 - ID4 SINE ID -1 82 2 3 1441 811 288 52 64 chr6 112213226 112213571 -37303466 - MTE2a LTR MaLR 0 379 39 3 1441 850 256 75 18 chr6 112214332 112214559 -37302478 + MTEa LTR MaLR 1 240 -139 3 1441 600 14 0 0 chr6 112214628 112214697 -37302340 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1441 422 36 0 18 chr6 112214697 112214753 -37302284 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1441 853 259 127 0 chr6 112214952 112215157 -37301880 - B4A SINE B4 -15 277 47 3 1441 302 185 0 44 chr6 112215261 112215329 -37301708 + MTEa LTR MaLR 313 377 -2 3 1441 245 209 209 0 chr6 112215370 112215437 -37301600 + ID4 SINE ID 3 83 0 3 1441 306 291 55 0 chr6 112215681 112215715 -37301322 - Tigger5 DNA MER2_type 0 2406 2372 3 1441 1193 286 44 11 chr6 112215715 112216079 -37300958 - MTEa LTR MaLR 0 379 4 3 1441 306 291 55 0 chr6 112216079 112216154 -37300883 - Tigger5 DNA MER2_type -35 2371 2292 3 1441 369 309 63 28 chr6 112216148 112216291 -37300746 - Tigger5 DNA MER2_type -2163 243 97 3 1441 198 143 0 0 chr6 112216601 112216636 -37300401 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 3 1441 309 26 0 0 chr6 112216644 112216682 -37300355 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 3 1441 498 265 5 119 chr6 112216726 112216919 -37300118 - MLT1E LTR MaLR -78 575 405 3 1441 266 281 110 52 chr6 112216957 112217130 -37299907 - MLT1E LTR MaLR -376 278 96 3 1441 463 104 47 0 chr6 112217317 112217423 -37299614 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 3 1441 657 172 0 0 chr6 112217427 112217549 -37299488 + (TA)n Simple_repeat Simple_repeat 2 123 0 3 1441 256 278 14 0 chr6 112218336 112218408 -37298629 + MIRc SINE MIR 37 109 -159 3 1441 515 294 52 91 chr6 112218565 112218685 -37298352 + MER33 DNA MER1_type 5 126 -198 3 1441 939 240 10 24 chr6 112218685 112218894 -37298143 + B3 SINE B2 2 207 -9 4 1441 515 294 52 91 chr6 112218894 112219102 -37297935 + MER33 DNA MER1_type 127 320 -4 3 1441 1093 101 6 0 chr6 112219889 112220047 -37296990 + B2_Mm2 SINE B2 2 160 -35 4 1441 299 105 18 0 chr6 112220051 112220108 -37296929 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1441 775 261 81 17 chr6 112220456 112220690 -37296347 + B4A SINE B4 36 284 -8 4 1441 269 183 0 16 chr6 112220717 112220778 -37296259 + GA-rich Low_complexity Low_complexity 2 61 0 4 1441 231 125 0 0 chr6 112220809 112220849 -37296188 + (TGG)n Simple_repeat Simple_repeat 3 42 0 4 1441 1177 68 0 0 chr6 112221624 112221770 -37295267 + B1_Mm SINE Alu 2 147 0 4 1441 270 0 0 0 chr6 112221770 112221800 -37295237 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1441 919 252 66 39 chr6 112221816 112222072 -37294965 + B4 SINE B4 8 270 -22 4 1441 312 27 0 0 chr6 112222074 112222111 -37294926 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1441 180 152 0 0 chr6 112222135 112222168 -37294869 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 4 1441 638 246 0 23 chr6 112222947 112223076 -37293961 + RSINE1 SINE B4 11 136 -29 4 1441 405 0 0 0 chr6 112223077 112223122 -37293915 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1441 252 0 0 0 chr6 112223122 112223149 -37293888 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1441 348 24 0 0 chr6 112223149 112223189 -37293848 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1441 36 40 0 0 chr6 112223213 112223263 -37293774 + AT_rich Low_complexity Low_complexity 1 50 0 4 1441 425 291 68 58 chr6 112226230 112226420 -37290617 + MIRb SINE MIR 31 222 -46 4 1441 851 275 104 36 chr6 112226458 112226707 -37290330 + B4 SINE B4 27 292 0 4 1441 292 200 11 11 chr6 112226707 112226798 -37290239 + (CA)n Simple_repeat Simple_repeat 1 91 0 4 1441 212 0 36 0 chr6 112227072 112227100 -37289937 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1441 525 250 90 28 chr6 112227740 112227884 -37289153 - RSINE1 SINE B4 -10 155 3 4 1441 1187 55 0 14 chr6 112228415 112228562 -37288475 + B1_Mus2 SINE Alu 2 146 -1 4 1441 269 333 0 0 chr6 112228573 112228642 -37288395 + ID4 SINE ID 10 78 -5 4 1441 294 29 0 0 chr6 112228642 112228677 -37288360 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 4 1441 201 74 0 0 chr6 112229296 112229323 -37287714 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1441 596 261 18 37 chr6 112229324 112229487 -37287550 - RSINE1 SINE B4 -3 162 3 4 1441 680 326 0 39 chr6 112230637 112230841 -37286196 + B4A SINE B4 95 290 -2 4 1441 267 369 60 21 chr6 112230897 112231049 -37285988 + MIRb SINE MIR 49 209 -59 4 1441 471 18 0 0 chr6 112231598 112231654 -37285383 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1441 351 287 8 102 chr6 112232338 112232466 -37284571 - PB1D10 SINE Alu 0 117 2 4 1441 305 266 0 12 chr6 112232492 112232572 -37284465 - ID2 SINE ID -3 80 2 4 1441 320 256 157 15 chr6 112232854 112233052 -37283985 + Charlie4a DNA MER1_type 217 442 -66 4 1441 180 344 104 0 chr6 112233202 112233298 -37283739 + MIR SINE MIR 33 138 -124 4 1441 234 357 30 20 chr6 112233535 112233635 -37283402 - L2c LINE L2 -181 3206 3106 4 1441 183 343 72 81 chr6 112234482 112234593 -37282444 - MIR3 SINE MIR -28 180 71 4 1441 329 277 15 0 chr6 112234604 112234679 -37282358 + ID4_ SINE ID 3 78 -74 4 1441 625 187 262 6 chr6 112234723 112234895 -37282142 + ID_B1 SINE B4 6 221 -3 4 1441 225 154 71 71 chr6 112234845 112234901 -37282136 + PB1D9 SINE Alu 65 120 0 4 1441 252 0 0 0 chr6 112234999 112235027 -37282010 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 4 1441 227 264 0 40 chr6 112235027 112235096 -37281941 - L3 LINE CR1 -177 4312 4246 4 1441 819 101 0 0 chr6 112235562 112235681 -37281356 + (TG)n Simple_repeat Simple_repeat 1 119 0 4 1441 502 273 86 0 chr6 112235701 112235829 -37281208 - B4 SINE B4 -153 139 1 4 1441 308 303 31 63 chr6 112235989 112236116 -37280921 + L1ME2 LINE L1 5170 5292 -854 4 1441 804 270 34 19 chr6 112236142 112236350 -37280687 - B3 SINE B2 -5 211 1 4 1441 874 331 102 25 chr6 112236357 112237106 -37279931 + L1ME2 LINE L1 5329 6134 -30 4 1441 226 284 75 54 chr6 112237190 112237283 -37279754 + B4 SINE B4 196 290 -2 4 1441 943 301 38 30 chr6 112239011 112239278 -37277759 + B4 SINE B4 2 270 -22 4 1441 217 235 0 56 chr6 112239279 112239333 -37277704 + polypyrimidine Low_complexity Low_complexity 5 55 0 4 1441 458 323 84 64 chr6 112239880 112240087 -37276950 + MER113 DNA MER1_type 111 332 -189 4 1441 841 271 9 18 chr6 112240087 112240305 -37276732 - B3 SINE B2 0 216 1 4 1441 458 323 84 64 chr6 112240305 112240490 -37276547 + MER113 DNA MER1_type 333 511 -10 4 1441 207 365 65 9 chr6 112240509 112240617 -37276420 - MIRc SINE MIR -27 241 128 4 1441 569 242 85 85 chr6 112240618 112240830 -37276207 + ID_B1 SINE B4 5 216 -8 4 1441 181 353 48 19 chr6 112241727 112241831 -37275206 - L2a LINE L2 -24 3402 3296 4 1441 210 204 0 20 chr6 112242091 112242141 -37274896 + T-rich Low_complexity Low_complexity 5 53 0 4 1441 247 212 30 0 chr6 112242140 112242206 -37274831 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1441 505 316 19 50 chr6 112242206 112242366 -37274671 - RSINE1 SINE B4 0 165 11 4 1441 462 194 186 0 chr6 112242372 112242496 -37274541 - B1_Mur2 SINE Alu 0 149 3 4 1441 333 0 0 0 chr6 112242827 112242864 -37274173 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1441 315 71 0 0 chr6 112242864 112242905 -37274132 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1441 204 40 0 0 chr6 112243186 112243211 -37273826 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1441 556 227 49 148 chr6 112243780 112244023 -37273014 + ID_B1 SINE B4 6 224 0 4 1441 578 264 105 17 chr6 112244041 112244222 -37272815 + ID_B1 SINE B4 1 197 -27 4 1441 1313 131 13 39 chr6 112244269 112244499 -37272538 + URR1A DNA MER1_type 3 226 0 4 1441 360 152 0 0 chr6 112245874 112245940 -37271097 + (CAG)n Simple_repeat Simple_repeat 2 67 0 4 1441 279 79 0 0 chr6 112245947 112245985 -37271052 + (ATG)n Simple_repeat Simple_repeat 3 40 0 4 1441 381 290 0 0 chr6 112246616 112246792 -37270245 + CT-rich Low_complexity Low_complexity 1 176 0 4 1441 610 293 48 0 chr6 112247240 112247407 -37269630 - ID_B1 SINE B4 0 224 50 4 1441 620 257 16 63 chr6 112247471 112247662 -37269375 - B4A SINE B4 0 292 111 4 1441 930 218 55 15 chr6 112247659 112247859 -37269178 - B3 SINE B2 -7 209 2 4 1441 352 325 61 40 chr6 112248793 112249040 -37267997 + MIR SINE MIR 6 257 -5 4 1441 311 311 84 94 chr6 112249597 112250002 -37267035 - LTR37B LTR ERV1 -59 409 9 4 1441 800 288 45 8 chr6 112250229 112250471 -37266566 + B4A SINE B4 42 292 0 4 1441 204 283 0 0 chr6 112250472 112250525 -37266512 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1441 218 246 0 0 chr6 112250512 112250569 -37266468 + GA-rich Low_complexity Low_complexity 2 58 0 4 1441 183 324 42 0 chr6 112251031 112251102 -37265935 - L2 LINE L2 -365 3054 2981 4 1441 315 351 81 50 chr6 112251359 112251719 -37265318 + Lx8 LINE L1 7101 7471 -2 4 1441 245 263 0 73 chr6 112252021 112252103 -37264934 - MIRb SINE MIR -46 222 147 4 1441 347 301 5 0 chr6 112253006 112253096 -37263941 + PB1D10 SINE Alu 23 115 -34 4 1441 851 283 39 55 chr6 112253406 112253660 -37263377 + B4 SINE B4 2 251 -41 4 1441 534 57 0 0 chr6 112253668 112253738 -37263299 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1441 324 64 0 0 chr6 112255398 112255445 -37261592 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1441 1097 276 39 27 chr6 112255447 112255782 -37261255 - ORR1E LTR MaLR -20 339 1 4 1441 787 224 158 92 chr6 112255928 112256188 -37260849 + B4 SINE B4 2 278 -14 4 1441 771 64 0 0 chr6 112256190 112256300 -37260737 + (TC)n Simple_repeat Simple_repeat 2 111 0 4 1441 225 0 0 0 chr6 112256301 112256326 -37260711 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1441 1085 266 47 63 chr6 112257700 112258046 -37258991 - ORR1E LTR MaLR -14 380 1 4 1441 378 0 0 0 chr6 112259118 112259160 -37257877 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1441 455 327 71 12 chr6 112259167 112259337 -37257700 - MER20 DNA MER1_type -18 201 22 4 1441 756 288 0 45 chr6 112259962 112260162 -37256875 - MER58A DNA MER1_type -15 209 19 4 1441 209 319 27 27 chr6 112260879 112260953 -37256084 + MIR3 SINE MIR 112 185 -23 4 1441 202 304 52 42 chr6 112261857 112261953 -37255084 - MIRc SINE MIR -132 136 40 4 1441 181 57 57 0 chr6 112262406 112262441 -37254596 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 4 1441 725 295 82 99 chr6 112264538 112264903 -37252134 - ORR1E LTR MaLR 0 359 1 4 1441 182 345 70 43 chr6 112265196 112265311 -37251726 - MIR SINE MIR -122 140 23 4 1441 465 34 0 0 chr6 112265342 112265401 -37251636 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1441 967 156 161 0 chr6 112266106 112266298 -37250739 + URR1B DNA MER1_type 1 223 -2 4 1441 548 312 57 91 chr6 112267054 112267449 -37249588 - ORR1E LTR MaLR -17 362 3 4 1441 384 261 24 100 chr6 112267695 112267709 -37249328 - B3 SINE B2 0 216 207 4 1441 456 91 0 0 chr6 112267709 112267775 -37249262 + (ATTG)n Simple_repeat Simple_repeat 2 67 0 4 1441 445 262 25 114 chr6 112267775 112267966 -37249071 - B3A SINE B2 -10 206 33 4 1441 270 116 0 0 chr6 112269104 112269147 -37247890 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 4 1441 438 286 78 39 chr6 112271464 112271617 -37245420 - MER58A DNA MER1_type -65 159 1 4 1441 392 264 6 0 chr6 112271802 112271976 -37245061 + (ATG)n Simple_repeat Simple_repeat 2 176 0 5 1441 279 0 0 0 chr6 112272081 112272112 -37244925 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1441 894 207 58 15 chr6 112272136 112272342 -37244695 - B3 SINE B2 -1 215 1 5 1441 253 352 73 16 chr6 112273436 112273560 -37243477 - MLT1G1 LTR MaLR -17 562 432 5 1441 291 305 0 11 chr6 112274416 112274504 -37242533 - PB1D7 SINE Alu -34 86 2 5 1441 236 366 0 0 chr6 112274441 112274512 -37242525 - B4 SINE B4 -143 149 79 5 1441 342 301 14 81 chr6 112275126 112275274 -37241763 - B3 SINE B2 -78 138 1 5 1441 579 276 43 87 chr6 112275387 112275512 -37241525 - MER58D DNA MER1_type -4 382 253 5 1441 5577 50 14 16 chr6 112275512 112276216 -37240821 + L1Md_F2 LINE L1 5868 6570 -12 5 1441 579 276 43 87 chr6 112276216 112276344 -37240693 - MER58D DNA MER1_type -134 252 140 5 1441 207 0 0 0 chr6 112276683 112276706 -37240331 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1441 893 209 4 0 chr6 112276736 112276993 -37240044 + (TGGA)n Simple_repeat Simple_repeat 1 258 0 5 1441 562 333 169 46 chr6 112277164 112277690 -37239347 + L1MC3 LINE L1 7186 7776 -9 5 1441 703 262 21 0 chr6 112277799 112277944 -37239093 - RSINE1 SINE B4 -16 149 2 5 1441 921 291 80 82 chr6 112277944 112278458 -37238579 + Charlie1 DNA MER1_type 2265 2777 -4 5 1441 287 333 90 30 chr6 112278480 112278613 -37238424 - MIR SINE MIR -73 189 49 5 1441 368 230 0 63 chr6 112279103 112279182 -37237855 + B4 SINE B4 12 85 -207 5 1441 540 101 0 0 chr6 112279198 112279287 -37237750 + (GA)n Simple_repeat Simple_repeat 2 90 0 5 1441 849 147 0 0 chr6 112280807 112280963 -37236074 + (GA)n Simple_repeat Simple_repeat 2 157 0 5 1441 330 176 17 8 chr6 112282197 112282317 -37234720 + (CAGC)n Simple_repeat Simple_repeat 2 122 0 5 1441 243 256 0 0 chr6 112282391 112282508 -37234529 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 5 1441 238 348 70 18 chr6 112282540 112282654 -37234383 - L2a LINE L2 -3 3423 3304 5 1441 195 186 0 0 chr6 112282777 112282820 -37234217 + A-rich Low_complexity Low_complexity 1 43 0 5 1441 337 224 0 23 chr6 112283902 112283989 -37233048 - L1MA7 LINE L1 0 6291 6207 5 1441 387 176 44 0 chr6 112284479 112284547 -37232490 - ID4 SINE ID -11 72 2 5 1441 378 0 0 0 chr6 112285016 112285058 -37231979 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1441 1850 168 39 0 chr6 112285118 112285428 -37231609 + ORR1B1 LTR MaLR 1 322 -72 5 1441 612 0 0 0 chr6 112286028 112286096 -37230941 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 5 1441 189 0 0 0 chr6 112286228 112286249 -37230788 + (TGG)n Simple_repeat Simple_repeat 3 23 0 5 1441 509 324 85 54 chr6 112286363 112286657 -37230380 - MLT1K LTR MaLR -97 498 196 5 1441 788 294 15 0 chr6 112286753 112286954 -37230083 + ID_B1 SINE B4 4 207 -17 5 1441 200 210 12 0 chr6 112287033 112287114 -37229923 + GA-rich Low_complexity Low_complexity 1 82 0 5 1441 726 87 0 0 chr6 112287142 112287245 -37229792 + (GGAA)n Simple_repeat Simple_repeat 4 106 0 5 1441 432 0 0 0 chr6 112288298 112288346 -37228691 + (TTG)n Simple_repeat Simple_repeat 1 48 0 5 1441 364 278 35 61 chr6 112289189 112289304 -37227733 + RSINE1 SINE B4 13 124 -41 5 1441 969 118 0 0 chr6 112289304 112289473 -37227564 + (CA)n Simple_repeat Simple_repeat 2 170 0 5 1441 28 48 0 0 chr6 112289510 112289552 -37227485 + AT_rich Low_complexity Low_complexity 1 42 0 5 1441 189 0 0 0 chr6 112289569 112289590 -37227447 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1441 524 0 45 0 chr6 112290150 112290216 -37226821 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 5 1441 1124 52 8 0 chr6 112290218 112290352 -37226685 - B1_Mus1 SINE Alu -13 135 1 5 1441 347 308 120 47 chr6 112291023 112291478 -37225559 + L2a LINE L2 2817 3309 -78 5 1441 338 107 0 18 chr6 112291888 112291945 -37225092 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 5 1441 686 311 110 40 chr6 112292082 112292454 -37224583 + MER74A LTR ERVL 16 413 -145 5 1441 432 0 0 0 chr6 112292507 112292555 -37224482 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1441 346 295 19 0 chr6 112292730 112292835 -37224202 - MIRb SINE MIR -93 175 69 5 1441 189 298 107 47 chr6 112293611 112293780 -37223257 - L2c LINE L2 -92 3295 3117 5 1441 258 56 0 0 chr6 112293784 112293820 -37223217 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5 1441 965 228 79 4 chr6 112293853 112294082 -37222955 + RMER1A Other Other 1 246 -784 5 1441 3930 236 77 18 chr6 112294092 112295064 -37221973 + RMER1A Other Other 1 1030 0 5 1441 297 345 50 0 chr6 112295123 112295262 -37221775 + MLT1H LTR MaLR 8 153 -396 5 1441 410 0 20 0 chr6 112295390 112295440 -37221597 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1441 298 208 0 0 chr6 112295523 112295585 -37221452 + MTE2a LTR MaLR 1 62 -317 5 1441 442 216 20 40 chr6 112295603 112295704 -37221333 + MTE2a LTR MaLR 269 367 -12 5 1441 373 316 127 29 chr6 112295729 112295902 -37221135 - L1M5 LINE L1 -1568 4578 4389 5 1441 441 225 153 32 chr6 112296390 112296514 -37220523 + ID_B1 SINE B4 2 140 -84 5 1441 821 318 36 65 chr6 112296655 112297310 -37219727 - ORR1E LTR MaLR -13 377 3 5 1441 354 225 33 83 chr6 112297312 112297433 -37219604 - MLT1B LTR MaLR -270 120 6 5 1441 479 328 95 9 chr6 112297437 112297754 -37219283 + L1MB4 LINE L1 5837 6180 0 5 1441 811 164 0 6 chr6 112298114 112298274 -37218763 + Lx2B LINE L1 6840 6998 -2 5 1441 747 263 47 26 chr6 112298274 112298299 -37218738 - B3A SINE B2 -1 197 168 5 1441 426 20 0 0 chr6 112298299 112298350 -37218687 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1441 747 263 47 26 chr6 112298350 112298515 -37218522 - B3A SINE B2 -31 167 3 5 1441 1655 153 90 0 chr6 112298620 112298908 -37218129 + ORR1B1 LTR MaLR 1 314 -80 5 1441 265 270 22 0 chr6 112298945 112299034 -37218003 + (ATG)n Simple_repeat Simple_repeat 2 92 0 5 1441 2227 131 78 8 chr6 112299662 112300023 -37217014 - ORR1B1 LTR MaLR -8 386 1 5 1441 321 318 123 0 chr6 112300283 112300437 -37216600 - MER113 DNA MER1_type -183 338 166 5 1441 707 275 36 52 chr6 112301042 112301234 -37215803 - B4 SINE B4 -2 290 102 5 1441 754 204 120 44 chr6 112302060 112302358 -37214679 - RMER15 LTR ERVL -94 481 39 5 1441 484 313 73 41 chr6 112303268 112303608 -37213429 - L3 LINE CR1 -98 4391 4041 5 1441 477 0 0 0 chr6 112304000 112304053 -37212984 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1441 486 0 0 0 chr6 112304053 112304106 -37212931 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1441 423 191 16 16 chr6 112306076 112306204 -37210833 + (TCCA)n Simple_repeat Simple_repeat 2 129 0 5 1441 400 186 44 15 chr6 112306202 112306338 -37210699 + CT-rich Low_complexity Low_complexity 3 142 0 5 1441 879 161 0 32 chr6 112306340 112306494 -37210543 - B1_Mur3 SINE Alu 0 149 1 5 1441 189 208 102 20 chr6 112306794 112306843 -37210194 - MIR SINE MIR -91 171 119 5 1441 1959 171 29 51 chr6 112306847 112307222 -37209815 - ORR1B2 LTR MaLR 0 367 1 5 1441 194 223 26 35 chr6 112307227 112307343 -37209694 + (CACCAT)n Simple_repeat Simple_repeat 1 115 0 5 1441 506 259 10 98 chr6 112307392 112307585 -37209452 + HAL1-2a_MD LINE L1 2346 2521 -503 5 1441 257 276 93 116 chr6 112307680 112307852 -37209185 - MIRm SINE MIR -95 181 14 5 1441 226 279 116 68 chr6 112308874 112309046 -37207991 + MIRc SINE MIR 14 181 -95 5 1441 399 220 26 110 chr6 112309779 112309940 -37207097 - MLT1A LTR MaLR -217 148 2 5 1441 189 147 0 0 chr6 112310181 112310215 -37206822 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1441 958 292 59 20 chr6 112311036 112311291 -37205746 + B4A SINE B4 1 265 -27 5 1441 652 165 27 48 chr6 112311292 112311438 -37205599 - RMER13A LTR ERVK -717 143 1 5 1441 573 309 83 61 chr6 112311571 112311862 -37205175 - ORR1E LTR MaLR -7 367 47 5 1441 2134 112 13 16 chr6 112311883 112312193 -37204844 + RLTR27 LTR ERVK 1 309 0 5 1441 219 308 0 44 chr6 112312552 112312620 -37204417 + MIR SINE MIR 87 151 -111 5 1441 27 0 0 0 chr6 112312906 112312933 -37204104 + AT_rich Low_complexity Low_complexity 1 27 0 5 1441 323 291 71 71 chr6 112313170 112313231 -37203806 + Lx8 LINE L1 6197 6256 -1217 5 1441 1212 43 0 0 chr6 112313231 112313370 -37203667 + B1_Mus2 SINE Alu 3 141 -6 5 1441 939 132 0 0 chr6 112313372 112313523 -37203514 + (GGA)n Simple_repeat Simple_repeat 2 152 0 5 1441 323 291 71 71 chr6 112313523 112313584 -37203453 + Lx8 LINE L1 6257 6322 -1151 5 1441 270 323 110 0 chr6 112313609 112313736 -37203301 + Lx8 LINE L1 7190 7330 -143 5 1441 206 128 26 0 chr6 112313865 112313904 -37203133 + GA-rich Low_complexity Low_complexity 4 43 0 5 1441 248 283 86 62 chr6 112314004 112314132 -37202905 + ORR1E LTR MaLR 52 182 -177 5 1441 21 36 0 0 chr6 112314210 112314238 -37202799 + AT_rich Low_complexity Low_complexity 1 28 0 5 1441 328 206 96 0 chr6 112314321 112314394 -37202643 + 4.5SRNA scRNA scRNA 1 80 -14 5 1441 399 198 52 0 chr6 112314396 112314492 -37202545 + Lx8 LINE L1 7039 7139 -334 5 1441 3982 140 43 12 chr6 112314914 112315585 -37201452 - RLTR17 LTR ERVK 0 692 1 5 1441 459 0 0 0 chr6 112316444 112316495 -37200542 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1441 315 0 0 0 chr6 112316495 112316529 -37200508 + (GA)n Simple_repeat Simple_repeat 1 35 0 5 1441 348 118 0 0 chr6 112316555 112316623 -37200414 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 1441 1019 320 17 23 chr6 112316765 112317114 -37199923 + ORR1E LTR MaLR 3 349 -10 5 1441 234 287 45 27 chr6 112317134 112317245 -37199792 - MER20B DNA MER1_type -137 646 534 5 1441 1126 260 86 34 chr6 112318691 112319041 -37197996 - MTE2b LTR MaLR -11 368 1 5 1441 1046 242 34 125 chr6 112319988 112320403 -37196634 - MTE2a LTR MaLR 0 379 3 6 1441 513 0 0 0 chr6 112320754 112320811 -37196226 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1441 224 271 60 0 chr6 112321466 112321543 -37195494 + MIRm SINE MIR 104 195 -73 6 1441 257 254 168 8 chr6 112322993 112323112 -37193925 + LTR16A1 LTR ERVL 210 347 -109 6 1441 376 262 38 0 chr6 112324263 112324343 -37192694 - B4A SINE B4 -189 103 21 6 1441 216 135 0 0 chr6 112325714 112325751 -37191286 + (G)n Simple_repeat Simple_repeat 1 37 0 6 1441 611 281 18 36 chr6 112326025 112326191 -37190846 + RSINE1 SINE B4 3 165 0 6 1441 237 419 69 22 chr6 112326540 112326816 -37190221 + MLT1K LTR MaLR 35 323 -272 6 1441 437 307 7 54 chr6 112326832 112326980 -37190057 + MLT1K LTR MaLR 438 578 -17 6 1442 278 308 44 0 chr6 112328804 112328895 -37188142 + RMER15 LTR ERVL 405 499 -76 6 1442 230 272 75 21 chr6 112329040 112329134 -37187903 - MIR3 SINE MIR -8 200 102 6 1442 1129 287 7 28 chr6 112329944 112330227 -37186810 - B4A SINE B4 0 292 16 6 1442 1064 265 39 35 chr6 112331371 112331465 -37185572 - B4 SINE B4 0 292 206 6 1442 513 0 0 0 chr6 112331465 112331522 -37185515 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1442 1064 265 39 35 chr6 112331522 112331685 -37185352 - B4 SINE B4 -87 205 35 6 1442 214 274 42 102 chr6 112331590 112331708 -37185329 - B3A SINE B2 -80 118 8 6 1442 229 358 36 21 chr6 112331959 112332099 -37184938 + MIRc SINE MIR 18 159 -109 6 1442 322 362 52 5 chr6 112333459 112333670 -37183367 - MER58A DNA MER1_type -2 222 2 6 1442 198 334 5 24 chr6 112333692 112333792 -37183245 - MER5A DNA MER1_type -35 154 47 6 1442 346 190 24 48 chr6 112334020 112334103 -37182934 + B1F SINE Alu 50 130 -19 6 1442 387 165 0 0 chr6 112334105 112334190 -37182847 + GA-rich Low_complexity Low_complexity 3 87 0 6 1442 328 333 50 23 chr6 112335138 112335333 -37181704 - MER58B DNA MER1_type 0 341 26 6 1442 219 362 9 19 chr6 112336927 112337034 -37180003 - MIRc SINE MIR -135 133 28 6 1442 473 265 111 46 chr6 112337240 112337400 -37179637 - MIRc SINE MIR -43 165 3 6 1442 336 190 0 0 chr6 112338703 112338782 -37178255 + (TG)n Simple_repeat Simple_repeat 1 79 0 6 1442 737 253 51 73 chr6 112338782 112339016 -37178021 - B4 SINE B4 0 292 64 6 1442 1013 67 0 7 chr6 112339015 112339150 -37177887 - B1_Mus1 SINE Alu 0 148 15 6 1442 239 175 0 0 chr6 112340280 112340320 -37176717 + ID4 SINE ID 6 45 -38 6 1442 401 330 0 0 chr6 112341659 112341774 -37175263 + B1F2 SINE Alu 35 149 0 6 1442 275 0 29 0 chr6 112341984 112342019 -37175018 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 1442 712 251 56 6 chr6 112342380 112342560 -37174477 + B4A SINE B4 2 190 -102 6 1442 276 273 73 24 chr6 112342572 112342696 -37174341 - L1MB3 LINE L1 -142 6041 5912 6 1442 182 219 0 24 chr6 112343176 112343218 -37173819 - MIRb SINE MIR -65 203 163 6 1442 639 0 0 0 chr6 112343220 112343291 -37173746 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1442 858 206 49 16 chr6 112343844 112344027 -37173010 + ORR1C2 LTR MaLR 194 382 -2 6 1442 406 310 153 21 chr6 112344044 112344377 -37172660 + L2a LINE L2 2705 3081 -338 6 1442 503 205 56 177 chr6 112344459 112344708 -37172329 - L1MA5 LINE L1 -1 6302 6084 6 1442 301 200 91 25 chr6 112344759 112344860 -37172177 - L1MA5 LINE L1 -350 5950 5844 6 1442 220 345 11 11 chr6 112345042 112345130 -37171907 + L2a LINE L2 3338 3425 -1 6 1442 273 311 70 119 chr6 112345858 112346059 -37170978 + ORR1E LTR MaLR 6 196 -163 6 1442 396 0 0 0 chr6 112346251 112346295 -37170742 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1442 363 192 298 0 chr6 112346635 112346739 -37170298 + B1F2 SINE Alu 8 142 -7 6 1442 32 26 0 0 chr6 112347181 112347220 -37169817 + AT_rich Low_complexity Low_complexity 1 39 0 6 1442 237 197 25 50 chr6 112347472 112347552 -37169485 + (CAGCC)n Simple_repeat Simple_repeat 4 81 0 6 1442 245 318 35 26 chr6 112347700 112347813 -37169224 - MLT1A1 LTR MaLR -70 338 225 6 1442 227 238 143 0 chr6 112347828 112347891 -37169146 - MLT1A1 LTR MaLR -288 86 15 6 1442 542 204 308 23 chr6 112347952 112348170 -37168867 - RMER4B LTR ERVK -9 576 343 6 1442 378 170 0 0 chr6 112348170 112348264 -37168773 + GA-rich Low_complexity Low_complexity 2 95 0 6 1442 1269 174 27 16 chr6 112348288 112348545 -37168492 - RMER4B LTR ERVK -310 275 16 6 1442 381 136 0 0 chr6 112348592 112348658 -37168379 + (TTGG)n Simple_repeat Simple_repeat 2 67 0 6 1442 523 272 0 0 chr6 112348673 112348787 -37168250 - PB1D7 SINE Alu -2 118 5 6 1442 239 319 58 30 chr6 112350514 112350692 -37166345 - MIRb SINE MIR -49 219 39 6 1442 371 335 5 58 chr6 112350847 112351037 -37166000 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 6 1442 325 158 18 0 chr6 112351751 112351808 -37165229 + MIRc SINE MIR 74 131 -137 6 1442 301 286 99 0 chr6 112353047 112353138 -37163899 - RMER15 LTR ERVL -15 560 461 6 1442 3376 51 55 49 chr6 112353532 112354004 -37163033 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1442 246 364 105 13 chr6 112354309 112354462 -37162575 + B3A SINE B2 27 193 -5 6 1442 500 311 62 13 chr6 112355250 112355475 -37161562 - LTR40b LTR ERVL -74 388 153 6 1442 384 22 0 0 chr6 112356236 112356281 -37160756 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1442 330 83 0 59 chr6 112356712 112356726 -37160311 + HAL1-3A_ME LINE L1 1965 1976 -882 6 1442 1276 211 23 57 chr6 112356726 112357027 -37160010 + B4A SINE B4 2 292 0 6 1442 330 83 0 59 chr6 112357027 112357063 -37159974 + HAL1-3A_ME LINE L1 1977 2012 -846 6 1442 360 0 0 0 chr6 112357063 112357103 -37159934 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 1442 308 266 14 123 chr6 112357103 112357249 -37159788 + HAL1-3A_ME LINE L1 1975 2104 -754 6 1442 712 266 41 32 chr6 112357874 112358095 -37158942 + ID_B1 SINE B4 1 223 -1 6 1442 266 164 0 18 chr6 112358096 112358152 -37158885 + GA-rich Low_complexity Low_complexity 1 55 0 6 1442 379 228 65 11 chr6 112358156 112358249 -37158788 + HAL1 LINE L1 1105 1202 -1305 6 1442 674 215 56 0 chr6 112358733 112358877 -37158160 + B3A SINE B2 1 152 -46 6 1442 453 152 0 0 chr6 112358891 112358996 -37158041 + GA-rich Low_complexity Low_complexity 2 106 0 6 1442 272 221 29 14 chr6 112359580 112359649 -37157388 - MLT1A1 LTR MaLR 0 408 339 6 1442 203 79 0 26 chr6 112360422 112360461 -37156576 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 1442 182 91 0 29 chr6 112360960 112360994 -37156043 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 6 1442 381 264 11 21 chr6 112361296 112361389 -37155648 + RSINE1 SINE B4 49 140 -25 6 1442 369 0 0 0 chr6 112361389 112361430 -37155607 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1442 36895 61 2 1 chr6 112361485 112366849 -37150188 + L1Md_F3 LINE L1 388 5720 -163 6 1442 3458 22 25 0 chr6 112366849 112367257 -37149780 + L1Md_F3 LINE L1 6167 6584 0 6 1442 480 257 69 131 chr6 112367331 112367681 -37149356 + L1MC4a LINE L1 6914 7241 -641 6 1442 3191 156 34 8 chr6 112367682 112368218 -37148819 + Lx5 LINE L1 5887 6436 -614 6 1442 3073 140 47 8 chr6 112368218 112368728 -37148309 + Lx5 LINE L1 6519 7048 -2 6 1442 233 196 0 0 chr6 112369004 112369050 -37147987 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 6 1442 263 332 40 60 chr6 112369050 112369249 -37147788 - ORR1E LTR MaLR -164 195 1 6 1442 189 314 86 0 chr6 112369771 112369841 -37147196 - MIR SINE MIR -79 183 108 6 1442 189 222 28 0 chr6 112369846 112369882 -37147155 + MIRb SINE MIR 201 237 -31 6 1442 532 253 87 19 chr6 112370120 112370281 -37146756 - B4A SINE B4 -119 173 2 6 1442 375 274 0 10 chr6 112370290 112370393 -37146644 + B4A SINE B4 189 290 -2 6 1442 221 180 20 0 chr6 112370422 112370472 -37146565 + GA-rich Low_complexity Low_complexity 2 52 0 6 1442 350 216 185 90 chr6 112371005 112371183 -37145854 - B2_Mm2 SINE B2 0 195 1 6 1442 435 305 104 28 chr6 112371647 112371921 -37145116 + Tigger15a DNA TcMar 95 390 -325 6 1442 495 254 48 48 chr6 112371921 112372045 -37144992 + B1_Mus1 SINE Alu 1 124 -24 6 1442 777 163 0 0 chr6 112372660 112372783 -37144254 - ORR1B1 LTR MaLR 0 394 272 6 1442 542 315 82 59 chr6 112372783 112373039 -37143998 - RMER15 LTR ERVL -15 560 299 6 1442 1373 225 65 35 chr6 112373974 112374342 -37142695 - MTE2b LTR MaLR 0 379 1 6 1442 1398 60 16 32 chr6 112374522 112374712 -37142325 + B2_Mm2 SINE B2 2 188 -7 6 1442 370 53 0 34 chr6 112375707 112375766 -37141271 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1442 294 338 140 6 chr6 112375780 112375944 -37141093 - MIRc SINE MIR -53 215 30 6 1442 234 232 0 104 chr6 112376063 112376140 -37140897 + MTEa LTR MaLR 306 374 -5 6 1442 1026 82 6 12 chr6 112376702 112376863 -37140174 + (TC)n Simple_repeat Simple_repeat 2 161 0 6 1442 570 109 0 0 chr6 112377171 112377272 -37139765 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 6 1442 232 263 89 38 chr6 112377914 112377933 -37139104 - RSINE1 SINE B4 -79 86 4 6 1442 274 220 17 17 chr6 112377933 112377993 -37139044 - B3A SINE B2 -136 62 3 6 1442 334 281 173 54 chr6 112379102 112379362 -37137675 + RMER12 LTR ERVK 759 1049 -273 6 1442 696 218 28 7 chr6 112379445 112379588 -37137449 - B1_Mur1 SINE Alu -3 146 1 6 1442 753 283 111 31 chr6 112380581 112380869 -37136168 + ORR1E LTR MaLR 1 311 -48 6 1442 2539 47 0 106 chr6 112381821 112382199 -37134838 + ORR1A1 LTR MaLR 1 338 -8 6 1442 230 333 99 37 chr6 112382486 112382648 -37134389 - MER20 DNA MER1_type -7 212 41 6 1442 2828 64 0 0 chr6 112383269 112383615 -37133422 - ORR1A1 LTR MaLR 0 346 1 6 1442 12733 91 17 1 chr6 112383615 112385379 -37131658 - ORR1A1-int LTR MaLR 0 1792 1 6 1442 2669 57 27 0 chr6 112385379 112385714 -37131323 - ORR1A1 LTR MaLR 0 346 3 6 1442 190 214 24 0 chr6 112386018 112386060 -37130977 + MIRc SINE MIR 107 149 -119 6 1442 288 0 0 0 chr6 112386232 112386264 -37130773 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 6 1442 2400 132 45 64 chr6 112386427 112386911 -37130126 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1442 4742 30 28 2 chr6 112386911 112387480 -37129557 + IAPEz-int LTR ERVK 8 591 -5890 7 1442 460 66 0 32 chr6 112387512 112387575 -37129462 + IAPEz-int LTR ERVK 1359 1419 -5062 7 1442 1826 123 4 4 chr6 112387564 112387826 -37129211 + IAPEz-int LTR ERVK 2236 2497 -5183 7 1442 951 80 24 0 chr6 112387821 112387946 -37129091 + IAPEz-int LTR ERVK 4783 4910 -2770 7 1442 20305 15 3 0 chr6 112387948 112390290 -37126747 + IAPEz-int LTR ERVK 4123 6471 -10 7 1442 308 231 91 165 chr6 112390614 112390790 -37126247 + MLT1K LTR MaLR 416 578 -17 7 1442 369 297 93 24 chr6 112391143 112391370 -37125667 - L1MA4A LINE L1 -397 5906 5696 7 1442 773 246 217 7 chr6 112391925 112392198 -37124839 - ORR1D2 LTR MaLR 0 370 41 7 1442 225 354 20 30 chr6 112392664 112392763 -37124274 + MIRb SINE MIR 34 131 -137 7 1442 258 81 0 0 chr6 112392859 112392896 -37124141 + (CCA)n Simple_repeat Simple_repeat 2 38 0 7 1442 401 291 101 48 chr6 112392896 112393084 -37123953 - MIR SINE MIR -7 255 58 7 1442 1066 244 133 7 chr6 112393832 112394125 -37122912 - MTD LTR MaLR -14 405 76 7 1442 231 245 0 20 chr6 112394289 112394339 -37122698 - RLTR21 LTR ERVK -182 1390 1342 7 1442 2911 235 68 138 chr6 112394307 112394489 -37122548 - RMER12 LTR ERVK -126 1196 1003 7 1442 330 26 0 0 chr6 112394489 112394528 -37122509 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1442 2911 235 68 138 chr6 112394528 112394642 -37122395 - RMER12 LTR ERVK -320 1002 896 7 1442 213 39 0 0 chr6 112394642 112394668 -37122369 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1442 2911 235 68 138 chr6 112394668 112394751 -37122286 - RMER12 LTR ERVK -427 895 827 7 1442 3176 70 22 5 chr6 112394751 112395151 -37121886 - MTB_Mm LTR MaLR 0 407 1 7 1442 2911 235 68 138 chr6 112395151 112396055 -37120982 - RMER12 LTR ERVK -496 826 1 7 1442 257 226 19 0 chr6 112396055 112396099 -37120938 - MTD LTR MaLR -376 45 1 7 1442 1455 189 76 97 chr6 112396119 112396159 -37120878 + ORR1D1 LTR MaLR 1 44 -330 7 1442 387 0 0 0 chr6 112396159 112396202 -37120835 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 7 1442 1455 189 76 97 chr6 112396202 112396543 -37120494 + ORR1D1 LTR MaLR 45 374 0 7 1442 598 248 24 0 chr6 112396732 112396857 -37120180 + B4 SINE B4 1 128 -164 7 1442 1702 176 88 20 chr6 112396874 112397228 -37119809 + ORR1C1 LTR MaLR 1 378 0 7 1442 421 176 21 62 chr6 112397229 112397326 -37119711 + B4A SINE B4 200 292 0 7 1442 955 283 44 7 chr6 112397371 112397645 -37119392 + B4A SINE B4 1 284 -8 7 1442 324 0 0 0 chr6 112397658 112397694 -37119343 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1442 1050 218 155 174 chr6 112398743 112399215 -37117822 + MT2A LTR ERVL 2 464 -69 7 1442 231 157 0 0 chr6 112399215 112399266 -37117771 + (CTTA)n Simple_repeat Simple_repeat 1 51 0 7 1442 782 95 8 0 chr6 112399322 112399448 -37117589 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 7 1442 263 116 0 0 chr6 112399448 112399491 -37117546 + MT2A LTR ERVL 490 532 -1 7 1442 228 35 0 0 chr6 112399753 112399782 -37117255 + (TGG)n Simple_repeat Simple_repeat 3 31 0 7 1442 450 0 0 0 chr6 112399802 112399852 -37117185 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 7 1442 312 361 10 0 chr6 112400409 112400506 -37116531 + MLT1D LTR MaLR 258 355 -150 7 1442 1166 254 14 87 chr6 112400732 112401168 -37115869 + Lx8 LINE L1 7068 7471 -2 7 1442 348 290 56 0 chr6 112401575 112401682 -37115355 + B1F SINE Alu 23 135 -14 7 1442 262 190 121 0 chr6 112401699 112401757 -37115280 + ID4_ SINE ID 2 66 -17 7 1442 369 0 0 0 chr6 112401765 112401806 -37115231 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1442 507 17 0 0 chr6 112401873 112401933 -37115104 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 1442 542 292 32 0 chr6 112402058 112402212 -37114825 - ID_B1 SINE B4 -65 159 1 7 1442 2696 112 91 0 chr6 112402554 112402939 -37114098 - RLTR9B2 LTR ERVK 0 420 1 7 1442 1689 277 0 10 chr6 112403357 112403740 -37113297 + MTEa LTR MaLR 1 379 0 7 1442 505 334 59 13 chr6 112403938 112404137 -37112900 + ORR1E LTR MaLR 1 200 -184 7 1442 235 282 11 96 chr6 112404169 112404263 -37112774 + MER45R DNA Tip100 1495 1580 -1 7 1442 657 268 38 22 chr6 112404539 112404722 -37112315 + RMER30 DNA MER1_type 8 193 -9 7 1442 230 325 50 0 chr6 112405365 112405445 -37111592 + MLT1J LTR MaLR 227 310 -202 7 1442 345 125 0 0 chr6 112405700 112405756 -37111281 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 1442 360 0 0 0 chr6 112405770 112405810 -37111227 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 7 1442 443 297 12 75 chr6 112405822 112405982 -37111055 - ID_B1 SINE B4 -26 198 49 7 1442 1105 68 0 27 chr6 112405977 112405988 -37111049 - B1_Mus2 SINE Alu 0 147 137 7 1442 678 58 0 0 chr6 112405988 112406075 -37110962 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 7 1442 180 0 0 0 chr6 112406076 112406096 -37110941 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 7 1442 1105 68 0 27 chr6 112406096 112406232 -37110805 - B1_Mus2 SINE Alu -11 136 2 7 1442 278 245 18 140 chr6 112406603 112406674 -37110363 - MTEa LTR MaLR -162 197 139 7 1442 2633 90 113 2 chr6 112406674 112407073 -37109964 + BGLII_A LTR ERVK 3 445 0 7 1442 278 245 18 140 chr6 112407073 112407115 -37109922 - MTEa LTR MaLR -221 138 98 7 1442 188 279 66 0 chr6 112407426 112407487 -37109550 + L2c LINE L2 3093 3157 -230 7 1442 250 310 76 45 chr6 112408739 112408767 -37108270 - MLT2B3 LTR ERVL -411 143 8 7 1442 323 206 39 115 chr6 112408767 112408871 -37108166 - MTEa LTR MaLR -276 103 8 7 1442 361 175 0 0 chr6 112408872 112408929 -37108108 + B4A SINE B4 1 57 -235 7 1442 660 303 6 26 chr6 112408939 112409095 -37107942 + RSINE1 SINE B4 2 154 -11 7 1442 216 0 0 0 chr6 112409095 112409119 -37107918 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 7 1442 299 248 67 52 chr6 112409262 112409390 -37107647 - MIRc SINE MIR -97 179 43 7 1442 544 285 43 7 chr6 112410901 112411039 -37105998 + RSINE1 SINE B4 2 144 -21 7 1442 1125 62 0 0 chr6 112411046 112411192 -37105845 + (CA)n Simple_repeat Simple_repeat 2 147 0 7 1442 599 257 167 4 chr6 112411204 112411462 -37105575 - Charlie5 DNA MER1_type -90 2534 2235 7 1442 261 250 69 37 chr6 112411737 112411887 -37105150 + L2c LINE L2 3083 3238 -137 7 1442 216 312 65 0 chr6 112411995 112412088 -37104949 + MIR SINE MIR 37 135 -127 7 1442 848 286 62 15 chr6 112414520 112414793 -37102244 + B4A SINE B4 5 290 -2 7 1442 219 339 0 0 chr6 112414803 112414865 -37102172 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1442 362 334 39 38 chr6 112415488 112415671 -37101366 - MLT1H2 LTR MaLR -323 226 6 7 1442 441 303 122 9 chr6 112416839 112417069 -37099968 - MER5C DNA MER1_type 0 313 58 7 1442 217 0 29 29 chr6 112417956 112417990 -37099047 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1442 190 267 0 43 chr6 112418180 112418227 -37098810 - L2a LINE L2 -21 3405 3361 7 1442 276 341 24 0 chr6 112418250 112418373 -37098664 + (TAGA)n Simple_repeat Simple_repeat 1 126 0 7 1442 677 108 40 13 chr6 112418403 112418553 -37098484 + (TAGA)n Simple_repeat Simple_repeat 4 157 0 7 1442 483 314 12 6 chr6 112418581 112418754 -37098283 + (TAGA)n Simple_repeat Simple_repeat 2 175 0 7 1442 391 180 202 16 chr6 112418852 112418976 -37098061 - Lx7 LINE L1 0 7696 7550 7 1442 261 0 0 0 chr6 112418991 112419020 -37098017 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1442 2443 156 42 12 chr6 112419141 112419549 -37097488 - MTC LTR MaLR 0 421 2 7 1442 5912 194 79 29 chr6 112419549 112420927 -37096110 - Lx7 LINE L1 -311 7385 5939 7 1442 233 359 47 0 chr6 112420935 112421041 -37095996 - MIRc SINE MIR -121 147 37 7 1442 578 234 16 0 chr6 112421087 112421215 -37095822 - B1F SINE Alu -2 147 18 7 1442 248 250 42 74 chr6 112421265 112421360 -37095677 - MTE2a LTR MaLR -19 360 269 7 1442 253 338 200 19 chr6 112421621 112421781 -37095256 - MIR SINE MIR -45 217 29 7 1442 411 210 0 0 chr6 112425468 112425568 -37091469 + (TG)n Simple_repeat Simple_repeat 1 100 0 7 1442 785 251 29 123 chr6 112425579 112425888 -37091149 - B4A SINE B4 -10 282 3 7 1442 516 292 153 28 chr6 112425975 112426327 -37090710 - L1M4 LINE L1 -1485 4661 4266 7 1442 252 0 0 0 chr6 112426344 112426372 -37090665 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 1442 220 264 111 0 chr6 112428343 112428415 -37088622 + MER5A1 DNA MER1_type 9 82 -84 7 1442 210 71 0 0 chr6 112428534 112428562 -37088475 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1442 615 290 118 0 chr6 112429796 112429982 -37087055 + MER58A DNA MER1_type 4 211 -13 7 1442 233 314 11 34 chr6 112430122 112430211 -37086826 + MIRb SINE MIR 36 122 -146 7 1442 566 312 71 0 chr6 112430935 112431105 -37085932 - RMER30 DNA MER1_type -1 201 20 7 1442 280 217 0 91 chr6 112431171 112431237 -37085800 + Charlie12 DNA MER1_type 2808 2867 -6 7 1442 504 0 0 0 chr6 112432045 112432101 -37084936 + (GAAA)n Simple_repeat Simple_repeat 3 58 0 7 1442 1083 58 0 0 chr6 112432135 112432274 -37084763 + (GAGAA)n Simple_repeat Simple_repeat 5 143 0 7 1442 344 286 26 9 chr6 112433739 112433852 -37083185 + MER5A1 DNA MER1_type 40 154 -12 7 1442 206 375 0 0 chr6 112433937 112434025 -37083012 + L2b LINE L2 3076 3163 -212 7 1442 794 285 59 11 chr6 112434792 112435065 -37081972 + B4 SINE B4 3 288 -4 7 1442 309 327 6 12 chr6 112435082 112435295 -37081742 + (CA)n Simple_repeat Simple_repeat 1 211 0 7 1442 488 315 6 0 chr6 112435426 112435604 -37081433 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1442 738 0 0 0 chr6 112436455 112436537 -37080500 + (CCCCAG)n Simple_repeat Simple_repeat 6 87 0 7 1442 1191 229 101 10 chr6 112437156 112437452 -37079585 + MTEb LTR MaLR 57 379 0 7 1442 243 0 0 0 chr6 112440497 112440524 -37076513 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 7 1442 570 71 0 0 chr6 112441472 112441556 -37075481 + (TC)n Simple_repeat Simple_repeat 1 84 0 7 1442 390 21 0 0 chr6 112441556 112441602 -37075435 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1442 222 231 58 0 chr6 112442188 112442240 -37074797 + MIR SINE MIR 99 153 -55 7 1442 514 312 87 53 chr6 112442308 112442572 -37074465 - B4 SINE B4 -18 274 2 7 1442 217 0 0 57 chr6 112443649 112443684 -37073353 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1442 597 249 74 64 chr6 112443731 112443931 -37073106 + B3 SINE B2 2 203 -13 7 1442 434 235 9 97 chr6 112443931 112444044 -37072993 + B1_Mur3 SINE Alu 1 103 -17 7 1442 210 37 0 0 chr6 112444044 112444071 -37072966 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 7 1442 508 290 139 91 chr6 112444113 112444340 -37072697 - MLT2D LTR ERVL -44 370 125 7 1442 438 20 0 0 chr6 112444340 112444391 -37072646 + (TAA)n Simple_repeat Simple_repeat 2 52 0 7 1442 508 290 139 91 chr6 112444391 112444516 -37072521 - MLT2D LTR ERVL -290 124 2 7 1442 198 103 0 0 chr6 112445193 112445222 -37071815 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1442 235 330 5 8 chr6 112446364 112446466 -37070571 - MIRb SINE MIR -87 181 81 8 1442 893 281 45 36 chr6 112446694 112446941 -37070096 + B4 SINE B4 2 250 -42 8 1442 291 122 0 0 chr6 112446954 112447003 -37070034 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1442 1002 128 0 22 chr6 112447029 112447213 -37069824 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 1442 474 184 0 0 chr6 112447213 112447304 -37069733 + GA-rich Low_complexity Low_complexity 8 98 0 8 1442 333 201 65 16 chr6 112448074 112448171 -37068866 + ID4_ SINE ID 6 105 -47 8 1442 3098 211 79 82 chr6 112448198 112449023 -37068014 - RMER13A LTR ERVK -25 835 14 8 1442 1113 52 30 9 chr6 112449205 112449538 -37067499 + (CA)n Simple_repeat Simple_repeat 1 340 0 8 1442 1420 66 22 0 chr6 112450170 112450351 -37066686 + B2_Mm2 SINE B2 2 186 -9 8 1442 675 292 139 49 chr6 112450504 112450749 -37066288 - MTEb LTR MaLR -7 372 106 8 1442 321 26 0 0 chr6 112450931 112450969 -37066068 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1442 417 20 0 0 chr6 112450969 112451018 -37066019 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1442 235 364 24 32 chr6 112452029 112452154 -37064883 + MIRb SINE MIR 31 154 -114 8 1442 775 295 105 27 chr6 112452223 112452481 -37064556 + B4A SINE B4 11 288 -4 8 1442 510 17 0 0 chr6 112452708 112452767 -37064270 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1442 656 143 0 37 chr6 112453464 112453573 -37063464 - ORR1A2 LTR MaLR -130 197 93 8 1442 3753 69 46 18 chr6 112453591 112454092 -37062945 - L1_Mus1 LINE L1 -1 6566 6052 8 1442 9398 80 9 7 chr6 112454092 112455587 -37061450 + L1_Mus1 LINE L1 4549 6047 -520 8 1442 571 142 36 36 chr6 112455587 112455697 -37061340 - ORR1A2 LTR MaLR -216 110 1 8 1442 556 279 65 28 chr6 112455703 112455950 -37061087 + L1M3a LINE L1 884 1139 -4928 8 1442 449 138 0 11 chr6 112456048 112456143 -37060894 + (GA)n Simple_repeat Simple_repeat 2 95 0 8 1442 646 289 75 36 chr6 112456209 112456464 -37060573 + B4A SINE B4 2 270 -22 8 1442 456 51 0 0 chr6 112456464 112456523 -37060514 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1442 646 289 75 36 chr6 112456523 112456547 -37060490 + B4A SINE B4 271 292 0 8 1442 228 292 15 44 chr6 112456630 112456698 -37060339 - MTEa LTR MaLR -3 376 311 8 1442 1116 42 21 7 chr6 112456698 112456842 -37060195 + B1_Mm SINE Alu 1 146 -1 8 1442 275 308 49 25 chr6 112457140 112457303 -37059734 + L1M3a LINE L1 3781 3947 -2196 8 1442 624 269 28 45 chr6 112457317 112457496 -37059541 + B3 SINE B2 9 184 -32 8 1442 27 49 0 0 chr6 112457550 112457591 -37059446 + AT_rich Low_complexity Low_complexity 1 41 0 8 1442 631 292 312 17 chr6 112457684 112458276 -37058761 + L1M3a LINE L1 3954 4720 -1423 8 1442 272 333 13 13 chr6 112458278 112458301 -37058736 + ID SINE ID 60 82 -142 8 1442 228 286 16 0 chr6 112458301 112458364 -37058673 + B1F1 SINE Alu 1 64 -85 8 1442 1451 244 68 14 chr6 112458514 112458868 -37058169 + MT2A LTR ERVL 1 373 -160 8 1442 385 195 219 68 chr6 112459078 112459389 -37057648 + L1M3a LINE L1 5099 5475 -693 8 1443 180 310 45 22 chr6 112460719 112460808 -37056229 - MIRc SINE MIR -61 207 117 8 1443 188 179 0 49 chr6 112460828 112460869 -37056168 - MIRb SINE MIR -5 263 225 8 1443 8671 28 0 4 chr6 112461190 112462186 -37054851 - L1Md_F2 LINE L1 -2 6580 5589 8 1443 309 267 68 8 chr6 112462206 112462338 -37054699 - L1M4b LINE L1 -3677 3657 3518 8 1443 1177 179 35 5 chr6 112462356 112462553 -37054484 + B3 SINE B2 6 208 -8 8 1443 285 318 19 9 chr6 112462606 112462714 -37054323 - Charlie1a DNA MER1_type -1302 153 45 8 1443 1642 182 172 9 chr6 112463095 112463444 -37053593 - MTD LTR MaLR -12 407 2 8 1443 348 242 71 0 chr6 112463444 112463543 -37053494 + U6 snRNA snRNA 2 107 0 8 1443 459 198 67 35 chr6 112463545 112463677 -37053360 + B1_Mus1 SINE Alu 1 148 0 8 1443 301 231 43 20 chr6 112464424 112464510 -37052527 + MIR SINE MIR 85 177 -91 8 1443 4089 187 55 7 chr6 112464626 112465536 -37051501 + Lx9 LINE L1 6632 7626 -18 8 1443 191 36 36 0 chr6 112465543 112465571 -37051466 + (TTATA)n Simple_repeat Simple_repeat 4 32 0 8 1443 808 250 43 0 chr6 112465808 112465996 -37051041 + B3 SINE B2 4 199 -17 8 1443 693 126 0 0 chr6 112466001 112466112 -37050925 + (GGAA)n Simple_repeat Simple_repeat 2 112 0 8 1443 380 330 103 18 chr6 112466426 112466698 -37050339 - L3 LINE CR1 -415 4074 3780 8 1443 1224 101 0 0 chr6 112467269 112467447 -37049590 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 8 1443 724 182 12 6 chr6 112467471 112467642 -37049395 + GA-rich Low_complexity Low_complexity 4 175 0 8 1443 295 130 0 0 chr6 112467642 112467688 -37049349 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 8 1443 2483 194 61 104 chr6 112467688 112468343 -37048694 - RMER20B LTR ERVK 0 627 1 8 1443 198 143 0 0 chr6 112468343 112468378 -37048659 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 8 1443 802 283 26 4 chr6 112469122 112469342 -37047695 - ID_B1 SINE B4 -41 251 24 8 1443 264 273 40 67 chr6 112470043 112470192 -37046845 + MER5A1 DNA MER1_type 22 166 0 8 1443 687 247 77 10 chr6 112470247 112470443 -37046594 - ID_B1 SINE B4 -14 210 2 8 1443 378 0 0 0 chr6 112471409 112471451 -37045586 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1443 6609 23 16 0 chr6 112471530 112472278 -37044759 + L1Md_F2 LINE L1 5811 6570 -12 8 1443 416 292 0 0 chr6 112473430 112473536 -37043501 + PB1D10 SINE Alu 2 107 -10 8 1443 456 306 124 7 chr6 112473789 112473934 -37043103 + RSINE1 SINE B4 2 163 -2 8 1443 218 32 32 0 chr6 112473955 112473986 -37043051 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 8 1443 670 346 14 19 chr6 112475292 112475501 -37041536 + MER58A DNA MER1_type 17 224 0 8 1443 449 249 60 77 chr6 112475604 112475787 -37041250 - L1MC5 LINE L1 -722 7239 7060 8 1443 252 312 0 12 chr6 112475918 112475999 -37041038 - B1F1 SINE Alu -65 84 5 8 1443 265 301 116 25 chr6 112476874 112476992 -37040045 - MIRc SINE MIR -108 154 18 8 1443 475 296 88 36 chr6 112477291 112477532 -37039505 + MLT1H1 LTR MaLR 7 303 -276 8 1443 1063 270 70 35 chr6 112477518 112477677 -37039360 + MLT2B4 LTR ERVL 36 203 -353 8 1443 567 0 0 0 chr6 112477677 112477740 -37039297 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1443 1063 270 70 35 chr6 112477740 112477922 -37039115 + MLT2B4 LTR ERVL 204 388 -168 8 1443 562 6 5 136 chr6 112477945 112478151 -37038886 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 8 1443 534 292 14 7 chr6 112478169 112478317 -37038720 + MLT2B4 LTR ERVL 412 560 0 8 1443 281 289 108 0 chr6 112478413 112478496 -37038541 + MLT1H1 LTR MaLR 356 447 -42 8 1443 1062 246 60 8 chr6 112478878 112479144 -37037893 - B4 SINE B4 -12 280 1 8 1443 645 264 39 6 chr6 112480150 112480306 -37036731 + Lx8 LINE L1 7087 7247 -226 8 1443 1495 228 24 72 chr6 112480310 112480422 -37036615 - ORR1D2 LTR MaLR -14 356 263 8 1443 240 86 0 0 chr6 112480422 112480457 -37036580 + (CAT)n Simple_repeat Simple_repeat 2 36 0 8 1443 1495 228 24 72 chr6 112480457 112480717 -37036320 - ORR1D2 LTR MaLR -108 262 2 8 1443 257 167 0 0 chr6 112480732 112480774 -37036263 + Lx8 LINE L1 7264 7305 -168 8 1443 227 211 0 0 chr6 112480916 112480954 -37036083 + Lx8 LINE L1 7268 7305 -168 8 1443 237 184 0 0 chr6 112481024 112481062 -37035975 + Lx8 LINE L1 7268 7305 -168 8 1443 237 184 0 0 chr6 112481168 112481206 -37035831 + Lx8 LINE L1 7268 7305 -168 8 1443 247 184 0 0 chr6 112481276 112481314 -37035723 + Lx8 LINE L1 7268 7305 -168 8 1443 237 184 0 0 chr6 112481384 112481422 -37035615 + Lx8 LINE L1 7268 7305 -168 8 1443 694 227 59 25 chr6 112481477 112481680 -37035357 + Lx8 LINE L1 7263 7472 -1 8 1443 29 0 0 0 chr6 112481680 112481709 -37035328 + AT_rich Low_complexity Low_complexity 1 29 0 8 1443 408 20 0 0 chr6 112482066 112482115 -37034922 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1443 3486 28 2 0 chr6 112482449 112482844 -37034193 - MTA_Mm LTR MaLR 0 396 1 8 1443 590 255 49 63 chr6 112483581 112483659 -37033378 - MER2 DNA MER2_type -52 293 224 8 1443 441 0 0 0 chr6 112483659 112483708 -37033329 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1443 590 255 49 63 chr6 112483708 112483834 -37033203 - MER2 DNA MER2_type -122 223 92 8 1443 263 299 26 0 chr6 112483861 112483938 -37033099 - ID4 SINE ID -3 80 2 8 1443 489 241 36 0 chr6 112483949 112484061 -37032976 - B1F SINE Alu -33 116 1 8 1443 3545 18 5 0 chr6 112484357 112484751 -37032286 + MTA_Mm LTR MaLR 1 396 0 8 1443 37599 30 3 8 chr6 112484942 112490349 -37026688 + L1Md_T LINE L1 207 5586 -297 8 1443 8684 29 1 0 chr6 112490349 112491344 -37025693 + L1Md_T LINE L1 5587 6582 0 8 1443 736 187 50 14 chr6 112491376 112491517 -37025520 + B1_Mur1 SINE Alu 3 148 -1 8 1443 329 317 39 29 chr6 112491560 112491768 -37025269 + L1ME3 LINE L1 5943 6152 -10 8 1443 210 71 0 0 chr6 112492914 112492942 -37024095 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1443 909 69 131 0 chr6 112493768 112493898 -37023139 + B1_Mus1 SINE Alu 2 148 0 8 1443 186 43 0 0 chr6 112493898 112493921 -37023116 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1443 387 194 282 0 chr6 112493980 112494083 -37022954 + RSINE1 SINE B4 3 134 -31 8 1443 209 325 39 13 chr6 112494363 112494441 -37022596 + MIRb SINE MIR 41 120 -148 8 1443 213 368 0 0 chr6 112495069 112495145 -37021892 + RSINE1 SINE B4 1 76 -89 8 1443 631 252 59 1 chr6 112495077 112495214 -37021823 + B3A SINE B2 8 150 -48 8 1443 288 0 0 0 chr6 112495214 112495246 -37021791 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1443 397 296 69 64 chr6 112495246 112495281 -37021756 + B2_Mm2 SINE B2 142 180 -15 8 1443 572 258 163 0 chr6 112495300 112495478 -37021559 + B3 SINE B2 2 208 -8 8 1443 267 232 0 0 chr6 112495481 112495537 -37021500 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1443 261 0 0 0 chr6 112495537 112495566 -37021471 + (CCA)n Simple_repeat Simple_repeat 1 29 0 8 1443 632 235 201 0 chr6 112495778 112495957 -37021080 + B3 SINE B2 2 216 0 8 1443 319 281 10 82 chr6 112498190 112498287 -37018750 - B1F SINE Alu -17 103 14 8 1443 7003 77 82 3 chr6 112498290 112499250 -37017787 + L1_Mus3 LINE L1 5597 6632 -6 8 1443 402 100 0 0 chr6 112499321 112499381 -37017656 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 1443 320 303 51 68 chr6 112500020 112500124 -37016913 + MLT1E2 LTR MaLR 20 125 -502 1 1443 672 293 68 95 chr6 112500124 112500493 -37016544 - ORR1E LTR MaLR 0 359 1 2 1443 320 303 51 68 chr6 112500493 112500505 -37016532 + MLT1E2 LTR MaLR 126 134 -493 1 1443 256 259 160 75 chr6 112500888 112501088 -37015949 + MLT1E2 LTR MaLR 230 446 -164 1 1443 189 0 0 0 chr6 112501314 112501335 -37015702 + (TA)n Simple_repeat Simple_repeat 2 22 0 3 1443 396 0 0 0 chr6 112501930 112501974 -37015063 + (TTA)n Simple_repeat Simple_repeat 1 44 0 4 1443 749 246 198 55 chr6 112502143 112502612 -37014425 - Lx7 LINE L1 -4 7692 7157 5 1443 239 333 123 9 chr6 112503389 112503495 -37013542 + L2a LINE L2 3294 3411 -15 6 1443 204 310 0 17 chr6 112503624 112503683 -37013354 - MIRb SINE MIR -15 253 196 7 1443 751 344 102 82 chr6 112504000 112504878 -37012159 + MLT1H-int LTR MaLR 509 1404 -5 8 1443 424 317 20 14 chr6 112504887 112505034 -37012003 + MLT1H LTR MaLR 6 153 -396 8 1443 707 257 199 23 chr6 112505110 112505293 -37011744 - MLT1A1 LTR MaLR -47 361 138 9 1443 237 65 0 0 chr6 112505293 112505324 -37011713 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 1 1443 707 257 199 23 chr6 112505324 112505447 -37011590 - MLT1A1 LTR MaLR -271 137 2 9 1443 227 333 142 15 chr6 112505577 112505711 -37011326 + MLT1H LTR MaLR 397 547 -2 8 1443 334 314 40 68 chr6 112507484 112507737 -37009300 + L1M4 LINE L1 3845 4092 -2054 1 1443 718 223 34 83 chr6 112507807 112508012 -37009025 + B3A SINE B2 4 198 0 1 1443 458 215 318 21 chr6 112508236 112508440 -37008597 - Lx7 LINE L1 -4 7692 7421 1 1443 315 0 0 0 chr6 112508440 112508475 -37008562 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1443 458 215 318 21 chr6 112508475 112508550 -37008487 - Lx7 LINE L1 -276 7420 7330 1 1443 430 220 3 2 chr6 112508665 112508752 -37008285 - B4A SINE B4 -193 99 12 1 1443 283 297 78 101 chr6 112508879 112509175 -37007862 + L1M4 LINE L1 4382 4670 -1476 1 1443 383 240 47 19 chr6 112509665 112509771 -37007266 - B3 SINE B2 0 216 108 1 1443 555 231 50 0 chr6 112509774 112509895 -37007142 + RSINE1 SINE B4 39 165 0 1 1443 272 290 14 0 chr6 112509895 112509964 -37007073 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1443 326 325 121 0 chr6 112509979 112510136 -37006901 + L1MC2 LINE L1 5130 5305 -841 1 1443 2450 111 0 3 chr6 112510136 112510480 -37006557 - Lx2A1 LINE L1 -1009 5999 5657 2 1443 6690 96 26 15 chr6 112510484 112511481 -37005556 + Lx2A LINE L1 6001 7008 0 2 1443 1570 303 83 28 chr6 112511488 112512384 -37004653 + L1MC2 LINE L1 5293 6237 -107 1 1443 308 371 90 51 chr6 112512439 112512771 -37004266 + L1M4 LINE L1 5374 5718 -522 1 1443 1070 65 0 0 chr6 112513416 112513554 -37003483 + B1_Mus2 SINE Alu 10 147 0 2 1443 221 0 0 33 chr6 112516409 112516439 -37000598 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1443 301 282 99 45 chr6 112517128 112517325 -36999712 + MLT1H2 LTR MaLR 80 322 -227 2 1443 458 266 102 66 chr6 112518455 112518652 -36998385 - MER119 DNA MER1_type -141 442 239 2 1443 241 372 29 0 chr6 112518948 112519085 -36997952 + MIRc SINE MIR 110 250 -18 2 1443 960 269 13 56 chr6 112519698 112520001 -36997036 - B4A SINE B4 0 292 3 2 1443 512 250 89 0 chr6 112520116 112520228 -36996809 + ID_B1 SINE B4 87 208 -16 2 1443 213 372 89 55 chr6 112520272 112520474 -36996563 - MIRc SINE MIR -49 219 11 2 1443 192 77 0 0 chr6 112521213 112521239 -36995798 + (GAA)n Simple_repeat Simple_repeat 3 28 0 3 1443 252 0 0 0 chr6 112521242 112521270 -36995767 + (GGA)n Simple_repeat Simple_repeat 3 30 0 3 1443 2430 126 45 66 chr6 112522407 112522428 -36994609 + MTC LTR MaLR 1 21 -400 3 1443 543 53 0 0 chr6 112522428 112522503 -36994534 + (CTAA)n Simple_repeat Simple_repeat 3 77 0 3 1443 2430 126 45 66 chr6 112522503 112522905 -36994132 + MTC LTR MaLR 22 414 -7 3 1443 679 177 16 6 chr6 112522941 112523065 -36993972 - B1_Mur1 SINE Alu -4 145 25 3 1443 394 277 86 90 chr6 112523286 112523520 -36993517 - MLT1L LTR MaLR -210 400 168 3 1443 1808 222 77 8 chr6 112524528 112524918 -36992119 - MTD LTR MaLR 0 419 3 3 1443 614 327 64 79 chr6 112525021 112525492 -36991545 - MER31B LTR ERV1 0 466 3 3 1443 377 261 33 50 chr6 112525644 112525765 -36991272 + MIRb SINE MIR 22 140 -128 3 1443 795 144 29 0 chr6 112525801 112525940 -36991097 - B1_Mus1 SINE Alu 0 148 6 3 1443 404 307 58 69 chr6 112525803 112525992 -36991045 - B4 SINE B4 -69 223 37 4 1443 3235 69 7 0 chr6 112526043 112526461 -36990576 + BGLII LTR ERVK 1 421 0 4 1443 315 202 88 78 chr6 112526527 112526629 -36990408 + MER5B DNA MER1_type 2 104 -74 4 1443 327 49 0 0 chr6 112526752 112526793 -36990244 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4 1443 236 265 57 29 chr6 112528768 112528838 -36988199 - MER65D LTR ERV1 -373 100 29 4 1443 1107 288 234 35 chr6 112529085 112529605 -36987432 + MLT1E3 LTR MaLR 1 624 0 4 1443 1148 145 119 5 chr6 112530087 112530288 -36986749 + URR1A DNA MER1_type 3 226 0 4 1443 1213 198 22 13 chr6 112530584 112530814 -36986223 + RLTR14 LTR ERV1 149 380 -2 4 1443 591 27 0 0 chr6 112530814 112530887 -36986150 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1443 4904 164 34 17 chr6 112530887 112531777 -36985260 - RMER13B LTR ERVK -3 905 1 4 1443 378 0 0 0 chr6 112531778 112531820 -36985217 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1443 1225 233 65 20 chr6 112532638 112532932 -36984105 + ERVL-B4-int LTR ERVL 4508 4814 -900 5 1443 737 199 294 0 chr6 112532933 112533134 -36983903 + Lx8 LINE L1 6460 6719 -754 5 1443 786 204 89 55 chr6 112533136 112533338 -36983699 + B3 SINE B2 4 212 -4 5 1443 3226 48 10 2 chr6 112533345 112533741 -36983296 + MTB LTR MaLR 1 399 -1 5 1443 209 122 0 47 chr6 112533791 112533834 -36983203 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 5 1443 970 298 71 65 chr6 112533834 112533983 -36983054 + Lx8 LINE L1 6756 6887 -586 5 1443 212 0 36 0 chr6 112533983 112534011 -36983026 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1443 1083 47 208 0 chr6 112534012 112534161 -36982876 - B2_Mm2 SINE B2 -15 180 1 5 1443 970 298 71 65 chr6 112534161 112534457 -36982580 + Lx8 LINE L1 6888 7206 -267 5 1443 351 0 0 0 chr6 112534497 112534536 -36982501 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1443 619 212 101 22 chr6 112534883 112535168 -36981869 + ERVL-B4-int LTR ERVL 4810 5142 -343 5 1443 271 146 0 0 chr6 112535175 112535216 -36981821 + ERVL-B4-int LTR ERVL 5122 5162 -505 5 1443 965 268 108 30 chr6 112535240 112535647 -36981390 + ERVL-B4-int LTR ERVL 5276 5714 0 5 1443 647 281 136 81 chr6 112535710 112536118 -36980919 + MLT2B1 LTR ERVL 86 554 -2 5 1443 863 291 148 62 chr6 112536142 112536243 -36980794 + L1MEc LINE L1 111 207 -6193 6 1443 1290 67 84 0 chr6 112536243 112536422 -36980615 + B2_Mm2 SINE B2 1 194 -1 6 1443 863 291 148 62 chr6 112536422 112536763 -36980274 + L1MEc LINE L1 208 574 -5826 6 1443 180 0 0 0 chr6 112536763 112536783 -36980254 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 6 1443 863 291 148 62 chr6 112536783 112537016 -36980021 + L1MEc LINE L1 575 845 -5555 6 1443 201 320 53 0 chr6 112537460 112537535 -36979502 - MIR3 SINE MIR -18 190 112 6 1443 653 262 136 88 chr6 112538086 112538425 -36978612 + ORR1E LTR MaLR 3 357 -2 6 1443 221 163 0 0 chr6 112538506 112538549 -36978488 + T-rich Low_complexity Low_complexity 3 45 0 6 1443 26926 80 8 11 chr6 112538556 112542960 -36974077 - L1_Mus2 LINE L1 -1 6565 2173 6 1443 818 93 0 0 chr6 112542960 112543067 -36973970 - U6 snRNA snRNA 0 107 1 6 1443 672 225 64 14 chr6 112543067 112543207 -36973830 - B1_Mur2 SINE Alu 0 149 3 6 1443 330 45 0 0 chr6 112543452 112543496 -36973541 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1443 189 0 0 0 chr6 112544550 112544571 -36972466 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1443 606 96 0 0 chr6 112544571 112544675 -36972362 + (GA)n Simple_repeat Simple_repeat 1 104 0 7 1443 3742 169 198 9 chr6 112544818 112545577 -36971460 + RMER19B LTR ERVK 1 902 0 7 1443 722 307 119 50 chr6 112545696 112546056 -36970981 + MLT1D LTR MaLR 113 497 -8 7 1443 1390 85 32 0 chr6 112546152 112546340 -36970697 + B2_Mm2 SINE B2 2 195 0 7 1443 267 224 104 0 chr6 112546554 112546621 -36970416 - L3 LINE CR1 -185 4304 4231 7 1443 6873 54 7 1 chr6 112546712 112547595 -36969442 + L1_Mus1 LINE L1 5727 6567 0 7 1443 3144 152 54 88 chr6 112548366 112549038 -36967999 - RLTR40 LTR ERVK -10 807 159 7 1443 567 88 0 0 chr6 112549044 112549135 -36967902 + (GGTTG)n Simple_repeat Simple_repeat 3 93 0 7 1443 834 167 65 0 chr6 112549143 112549281 -36967756 - B1_Mus2 SINE Alu 0 147 1 7 1443 666 189 19 159 chr6 112549281 112549300 -36967737 - RLTR40 LTR ERVK -646 171 159 7 1443 1199 158 48 5 chr6 112549300 112549510 -36967527 - URR1B DNA MER1_type -2 223 5 8 1443 666 189 19 159 chr6 112549510 112549574 -36967463 - RLTR40 LTR ERVK -659 158 116 7 1443 1362 71 71 0 chr6 112549574 112549756 -36967281 - B2_Mm2 SINE B2 0 195 1 8 1443 666 189 19 159 chr6 112549756 112549870 -36967167 - RLTR40 LTR ERVK -702 115 2 7 1443 28 29 0 0 chr6 112549873 112549908 -36967129 + AT_rich Low_complexity Low_complexity 1 35 0 8 1443 185 368 11 11 chr6 112550181 112550269 -36966768 + MIR3 SINE MIR 110 197 -11 8 1443 227 310 83 41 chr6 112551145 112551266 -36965771 + LTRIS_Mm LTR ERV1 348 473 -9 8 1443 609 286 18 1 chr6 112551679 112551853 -36965184 + L1M3 LINE L1 5295 5471 -712 8 1443 502 244 69 64 chr6 112551853 112552041 -36964996 + B3A SINE B2 1 189 -9 8 1443 563 304 16 16 chr6 112552041 112552053 -36964984 + L1M3 LINE L1 5472 5481 -702 8 1443 187 232 68 51 chr6 112553347 112553406 -36963631 + MIR3 SINE MIR 143 202 -6 8 1443 2271 113 110 24 chr6 112553489 112553862 -36963175 - MTC LTR MaLR -1 420 16 8 1443 251 274 124 32 chr6 112554244 112554377 -36962660 + ID4_ SINE ID 3 142 -10 8 1443 243 396 18 26 chr6 112554433 112554455 -36962582 + ID SINE ID 63 83 -141 9 1443 400 329 1 26 chr6 112554455 112554587 -36962450 + PB1D10 SINE Alu 4 133 -15 9 1443 180 290 84 21 chr6 112557871 112557966 -36959071 - MIRb SINE MIR -1 267 167 9 1443 23 0 0 0 chr6 112558116 112558139 -36958898 + AT_rich Low_complexity Low_complexity 1 23 0 9 1443 224 30 30 0 chr6 112558841 112558874 -36958163 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 9 1443 552 165 101 0 chr6 112558882 112558991 -36958046 - B1_Mur4 SINE Alu -6 144 25 9 1443 198 103 0 0 chr6 112560240 112560269 -36956768 + (TA)n Simple_repeat Simple_repeat 1 29 0 9 1443 618 233 0 0 chr6 112560285 112560465 -36956572 + (TA)n Simple_repeat Simple_repeat 1 180 0 9 1443 369 234 0 0 chr6 112560478 112560555 -36956482 + (TA)n Simple_repeat Simple_repeat 1 77 0 9 1443 458 198 12 36 chr6 112560568 112560736 -36956301 + (TATATG)n Simple_repeat Simple_repeat 2 165 0 9 1443 609 209 0 0 chr6 112560698 112560851 -36956186 + (TA)n Simple_repeat Simple_repeat 1 153 0 9 1443 333 256 78 0 chr6 112560962 112561052 -36955985 + RSINE1 SINE B4 53 149 -16 9 1443 222 37 0 0 chr6 112561058 112561085 -36955952 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1443 279 288 47 0 chr6 112561187 112561288 -36955749 - PB1D10 SINE Alu -7 110 2 1 1443 182 375 38 9 chr6 112561461 112561566 -36955471 + L4 LINE RTE 1742 1849 -180 1 1443 268 169 17 17 chr6 112561638 112561698 -36955339 - L1_Mur3 LINE L1 -659 5221 5162 1 1443 29 47 0 0 chr6 112561830 112561873 -36955164 + AT_rich Low_complexity Low_complexity 1 43 0 1 1443 477 236 121 0 chr6 112561994 112562151 -36954886 - Lx8 LINE L1 -212 7261 7086 1 1443 444 19 0 0 chr6 112562156 112562209 -36954828 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1443 488 144 7 43 chr6 112562251 112562389 -36954648 + (TG)n Simple_repeat Simple_repeat 2 134 0 1 1443 606 264 28 22 chr6 112562401 112562583 -36954454 - Lx8 LINE L1 -363 7110 6928 1 1443 293 209 81 8 chr6 112562571 112562673 -36954364 + Lx7 LINE L1 3100 3214 -2663 1 1443 1095 205 29 21 chr6 112562675 112562954 -36954083 + RLTR22_Mur LTR ERVK 1 281 -1567 1 1443 2261 199 52 2 chr6 112562954 112563418 -36953619 - Lx2B LINE L1 -20 6980 6494 1 1443 6292 203 36 11 chr6 112563417 112565087 -36951950 + Lx7 LINE L1 5279 6998 -698 1 1443 563 305 98 60 chr6 112565100 112565498 -36951539 + MTE-int LTR MaLR 746 1311 -269 1 1443 3095 23 0 0 chr6 112565580 112565926 -36951111 - ORR1A0 LTR MaLR 0 346 1 1 1443 11452 59 13 2 chr6 112565926 112567550 -36949487 - ORR1A0-int LTR MaLR 0 1792 151 1 1443 2653 24 0 0 chr6 112567554 112567883 -36949154 - ORR1A0 LTR MaLR 0 346 18 1 1443 1098 181 52 9 chr6 112568399 112568611 -36948426 + URR1B DNA MER1_type 1 221 -4 1 1443 756 196 115 21 chr6 112568679 112568914 -36948123 + MLT1B LTR MaLR 71 327 -63 1 1443 237 250 56 0 chr6 112569442 112569514 -36947523 + URR1B DNA MER1_type 63 138 -87 1 1443 273 196 0 0 chr6 112569520 112569576 -36947461 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1443 411 21 0 0 chr6 112569578 112569626 -36947411 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1 1443 223 115 49 0 chr6 112570581 112570642 -36946395 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 1 1443 366 252 42 84 chr6 112571177 112571320 -36945717 + B1F SINE Alu 12 148 -1 1 1443 494 230 95 101 chr6 112571339 112571372 -36945665 + B4 SINE B4 46 72 -220 1 1443 2350 126 10 63 chr6 112571372 112571770 -36945267 + ORR1C1 LTR MaLR 2 378 0 1 1443 494 230 95 101 chr6 112571770 112571905 -36945132 + B4 SINE B4 73 213 -79 1 1443 563 98 11 0 chr6 112572014 112572106 -36944931 + (GA)n Simple_repeat Simple_repeat 2 94 0 1 1443 371 206 35 0 chr6 112572254 112572340 -36944697 - B1F1 SINE Alu -1 148 34 1 1443 351 289 92 39 chr6 112572595 112572930 -36944107 + L1MEf LINE L1 1150 1502 -4921 1 1443 414 208 238 44 chr6 112573094 112573275 -36943762 + B3 SINE B2 1 216 0 1 1443 447 273 148 45 chr6 112573376 112573760 -36943277 + L1MEf LINE L1 2031 2446 -4591 1 1443 310 283 223 20 chr6 112574265 112574467 -36942570 - HERVL40-int LTR ERVL 0 5530 5288 1 1443 543 328 41 25 chr6 112575369 112575613 -36941424 - HERVL40-int LTR ERVL -959 4571 4324 1 1443 227 235 154 87 chr6 112575613 112575762 -36941275 - MER58A DNA MER1_type -1 223 65 1 1443 225 278 0 69 chr6 112575783 112575841 -36941196 - MER58A DNA MER1_type -168 56 3 1 1443 375 298 0 0 chr6 112576053 112576147 -36940890 + MLT1B LTR MaLR 267 360 -30 1 1443 447 290 78 46 chr6 112576530 112576862 -36940175 + L1MEf LINE L1 5661 5996 -945 1 1443 636 250 101 29 chr6 112577246 112577573 -36939464 - L1M4b LINE L1 -3630 3704 3084 1 1443 183 80 0 0 chr6 112577723 112577748 -36939289 + (CACCAT)n Simple_repeat Simple_repeat 4 28 0 1 1443 394 253 11 0 chr6 112577788 112577875 -36939162 - ID_B1 SINE B4 -7 217 130 1 1443 202 309 15 0 chr6 112577882 112577950 -36939087 - L2 LINE L2 -1344 2075 2007 1 1443 1188 79 0 6 chr6 112579426 112579592 -36937445 + B2_Mm2 SINE B2 1 165 -30 1 1443 253 364 100 27 chr6 112581917 112582137 -36934900 + MIRb SINE MIR 24 259 -3 1 1443 1377 134 221 13 chr6 112583183 112583500 -36933537 - ORR1B1 LTR MaLR -11 383 1 1 1443 2003 133 92 11 chr6 112584571 112584928 -36932109 - ORR1B1 LTR MaLR -8 386 1 1 1443 466 134 0 35 chr6 112585470 112585555 -36931482 + L1_Mus2 LINE L1 6484 6565 -1 1 1443 401 287 0 0 chr6 112587445 112587532 -36929505 + B1F1 SINE Alu 5 91 -58 1 1443 242 267 33 16 chr6 112587934 112587995 -36929042 - RMER1A Other Other -825 205 144 1 1443 356 248 219 9 chr6 112588009 112588086 -36928951 - RMER1A Other Other -715 315 215 1 1443 294 29 0 0 chr6 112588086 112588121 -36928916 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1443 356 248 219 9 chr6 112588121 112588157 -36928880 - RMER1A Other Other -816 214 178 1 1443 194 229 83 0 chr6 112588315 112588363 -36928674 + MIRb SINE MIR 34 85 -183 1 1443 380 142 7 4 chr6 112589141 112589222 -36927815 + Lx5 LINE L1 5794 5875 -761 1 1443 2550 174 137 8 chr6 112589225 112589729 -36927308 + Lx5 LINE L1 6482 7050 0 1 1443 198 0 0 0 chr6 112589960 112589982 -36927055 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 1 1443 1123 60 0 0 chr6 112589982 112590115 -36926922 - B1_Mm SINE Alu -13 134 2 1 1444 186 43 0 0 chr6 112591161 112591184 -36925853 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 1 1444 31 0 0 0 chr6 112591461 112591492 -36925545 + AT_rich Low_complexity Low_complexity 1 31 0 1 1444 346 211 37 73 chr6 112591522 112591551 -36925486 - L1MC4 LINE L1 -203 7839 7811 1 1444 1053 132 43 16 chr6 112591551 112591736 -36925301 + B2_Mm2 SINE B2 1 190 -5 1 1444 346 211 37 73 chr6 112591736 112591870 -36925167 - L1MC4 LINE L1 -232 7810 7683 1 1444 838 191 14 0 chr6 112591880 112592027 -36925010 + B1_Mur4 SINE Alu 1 149 -1 1 1444 26 30 0 0 chr6 112592349 112592382 -36924655 + AT_rich Low_complexity Low_complexity 1 33 0 1 1444 288 0 0 0 chr6 112592848 112592880 -36924157 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1444 860 145 14 14 chr6 112592883 112593030 -36924007 - B1_Mur3 SINE Alu -2 147 1 1 1444 681 249 51 61 chr6 112593527 112593724 -36923313 - B3A SINE B2 -17 199 5 1 1444 258 34 0 322 chr6 112593724 112593783 -36923254 + RMER1B Other Other 761 800 -266 1 1444 465 202 10 0 chr6 112594032 112594136 -36922901 + URR1B DNA MER1_type 121 225 0 1 1444 822 286 62 96 chr6 112594141 112594528 -36922509 + MTE2b LTR MaLR 4 377 -2 1 1444 25 0 0 0 chr6 112594750 112594775 -36922262 + AT_rich Low_complexity Low_complexity 1 25 0 1 1444 801 165 8 8 chr6 112594925 112595059 -36921978 - B1_Mur4 SINE Alu -15 135 2 1 1444 2156 143 87 20 chr6 112595970 112596363 -36920674 - MTC LTR MaLR -2 419 1 1 1444 762 242 90 27 chr6 112596641 112597053 -36919984 + L1MB4 LINE L1 5026 5466 -714 1 1444 1669 206 163 19 chr6 112597053 112597476 -36919561 + MT2A LTR ERVL 1 490 -43 1 1444 315 0 0 0 chr6 112597476 112597511 -36919526 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1444 1669 206 163 19 chr6 112597511 112597553 -36919484 + MT2A LTR ERVL 491 532 -1 1 1444 550 278 73 23 chr6 112597553 112597722 -36919315 + L1MB4 LINE L1 5467 5636 -664 1 1444 856 303 22 33 chr6 112597732 112598005 -36919032 + MTD LTR MaLR 5 274 -145 1 1444 386 179 65 49 chr6 112598056 112598137 -36918900 + MTD LTR MaLR 282 367 -52 1 1444 225 0 0 0 chr6 112598137 112598162 -36918875 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1444 386 179 65 49 chr6 112598162 112598203 -36918834 + MTD LTR MaLR 368 406 -13 1 1444 791 284 117 18 chr6 112598211 112598699 -36918338 + L1MB4 LINE L1 5645 6180 0 1 1444 1526 33 44 0 chr6 112598921 112599104 -36917933 + B2_Mm2 SINE B2 2 192 -3 1 1444 483 290 27 20 chr6 112599390 112599538 -36917499 + RSINE1 SINE B4 13 161 -4 1 1444 285 274 137 0 chr6 112600154 112600249 -36916788 - PB1D9 SINE Alu -1 119 12 1 1444 328 257 85 33 chr6 112600895 112601048 -36915989 + LTR37A LTR ERV1 138 298 -128 1 1444 26 50 0 0 chr6 112601085 112601125 -36915912 + AT_rich Low_complexity Low_complexity 1 40 0 1 1444 439 261 83 21 chr6 112601125 112601270 -36915767 - B3 SINE B2 0 216 63 1 1444 697 216 178 116 chr6 112601460 112601655 -36915382 - MTE2a LTR MaLR -2 377 151 1 1444 917 202 60 5 chr6 112601655 112601854 -36915183 + B3 SINE B2 1 210 -6 1 1444 697 216 178 116 chr6 112601854 112602013 -36915024 - MTE2a LTR MaLR -229 150 1 1 1444 911 208 39 19 chr6 112602437 112602643 -36914394 + B3 SINE B2 1 210 -6 1 1444 36376 51 0 4 chr6 112602670 112608609 -36908428 + L1Md_T LINE L1 1 5589 -297 1 1444 8568 34 0 2 chr6 112608609 112609656 -36907381 + L1Md_T LINE L1 5590 6585 0 1 1444 186 316 0 26 chr6 112609853 112609931 -36907106 + L2 LINE L2 1578 1653 -1766 1 1444 272 348 29 97 chr6 112610593 112610675 -36906362 + Charlie1a DNA MER1_type 32 107 -1348 1 1444 843 249 35 10 chr6 112610675 112610878 -36906159 - B3 SINE B2 -8 208 1 1 1444 272 348 29 97 chr6 112610878 112610970 -36906067 + Charlie1a DNA MER1_type 108 194 -1261 1 1444 232 287 0 84 chr6 112611149 112611244 -36905793 + Charlie1a DNA MER1_type 275 361 -1094 1 1444 870 184 26 16 chr6 112611300 112611493 -36905544 - MTC LTR MaLR -6 415 221 1 1444 610 146 10 0 chr6 112611478 112611581 -36905456 - MTC LTR MaLR -317 104 1 1 1444 224 305 24 0 chr6 112611588 112611670 -36905367 - PB1D10 SINE Alu 0 117 34 1 1444 610 312 124 12 chr6 112611709 112612290 -36904747 + Charlie1a DNA MER1_type 505 1186 -269 1 1444 381 245 75 106 chr6 112612290 112612450 -36904587 + RSINE1 SINE B4 11 165 0 1 1444 238 274 62 10 chr6 112613331 112613427 -36903610 - L1M4 LINE L1 -1947 4199 4099 1 1444 992 144 0 0 chr6 112613619 112613765 -36903272 - B1_Mus1 SINE Alu 0 148 3 1 1444 301 0 22 43 chr6 112613776 112613822 -36903215 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 1 1444 27 0 0 0 chr6 112613840 112613867 -36903170 + AT_rich Low_complexity Low_complexity 1 27 0 1 1444 203 103 0 25 chr6 112614305 112614345 -36902692 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 1 1444 236 308 0 0 chr6 112614399 112614464 -36902573 + GA-rich Low_complexity Low_complexity 2 66 0 1 1444 243 303 62 50 chr6 112614512 112614592 -36902445 + ID4_ SINE ID 1 81 -2 1 1444 447 193 45 0 chr6 112614612 112614700 -36902337 + B1_Mur3 SINE Alu 47 138 -11 1 1444 228 287 10 78 chr6 112614613 112614715 -36902322 + ID_B1 SINE B4 129 223 -1 1 1444 869 262 71 42 chr6 112615722 112616005 -36901032 - B4A SINE B4 0 292 2 1 1444 5957 228 87 30 chr6 112616626 112618088 -36898949 + Lx7 LINE L1 4620 6169 -1527 1 1444 444 19 0 0 chr6 112618088 112618141 -36898896 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1444 5957 254 78 19 chr6 112618141 112619288 -36897749 + Lx7 LINE L1 6170 7363 -333 1 1444 223 200 0 16 chr6 112619421 112619482 -36897555 + A-rich Low_complexity Low_complexity 6 65 0 1 1444 272 194 16 31 chr6 112619484 112619536 -36897501 + B1_Mus1 SINE Alu 1 51 -97 1 1444 2208 159 144 6 chr6 112619536 112620037 -36897000 + RLTR20B3 LTR ERVK 1 570 -7 1 1444 502 141 47 12 chr6 112620045 112620131 -36896906 + B1_Mur1 SINE Alu 55 143 -6 1 1444 215 239 15 0 chr6 112620151 112620218 -36896819 + GA-rich Low_complexity Low_complexity 4 71 0 1 1444 599 288 13 20 chr6 112620268 112620417 -36896620 + B3A SINE B2 3 150 -48 1 1444 22 26 0 25 chr6 112620428 112620456 -36896581 + AT_rich Low_complexity Low_complexity 1 28 0 1 1444 1141 82 0 7 chr6 112620456 112620603 -36896434 - B1_Mm SINE Alu 0 147 2 2 1444 22 26 0 25 chr6 112620603 112620614 -36896423 + AT_rich Low_complexity Low_complexity 1 11 0 2 1444 2672 29 0 9 chr6 112620761 112621076 -36895961 - L1_Mus1 LINE L1 0 6567 6256 2 1444 4107 54 0 0 chr6 112621076 112621572 -36895465 + L1_Mus1 LINE L1 5750 6245 -322 2 1444 1483 198 20 94 chr6 112622338 112622733 -36894304 + ORR1D1 LTR MaLR 1 366 -8 2 1444 360 0 0 0 chr6 112623623 112623663 -36893374 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 2 1444 342 298 109 52 chr6 112623716 112624063 -36892974 + L1MCc LINE L1 19 385 -6038 2 1444 466 214 143 77 chr6 112624068 112624250 -36892787 + MTEa LTR MaLR 186 379 0 2 1444 749 167 51 0 chr6 112624274 112624412 -36892625 + B1_Mur3 SINE Alu 5 149 0 2 1444 1570 271 61 16 chr6 112624423 112624929 -36892108 + MTEa-int LTR MaLR 2 530 -1050 2 1444 583 146 48 10 chr6 112624943 112625047 -36891990 + B1_Mur3 SINE Alu 10 117 -32 2 1444 269 290 152 0 chr6 112625307 112625452 -36891585 - MIRb SINE MIR -14 254 88 2 1444 709 335 20 53 chr6 112626049 112626349 -36890688 + B4 SINE B4 3 292 0 2 1444 222 333 21 41 chr6 112626639 112626736 -36890301 - MER5A DNA MER1_type -93 96 2 2 1444 332 208 33 44 chr6 112628700 112628935 -36888102 + (CATAC)n Simple_repeat Simple_repeat 1 232 0 2 1444 332 208 33 44 chr6 112628973 112629154 -36887883 + (CATAC)n Simple_repeat Simple_repeat 2 180 0 2 1444 213 318 17 70 chr6 112629214 112629329 -36887708 - B1F1 SINE Alu -40 109 1 2 1444 31 92 0 0 chr6 112629453 112629540 -36887497 + AT_rich Low_complexity Low_complexity 1 87 0 2 1444 235 119 24 0 chr6 112632731 112632773 -36884264 - B1F1 SINE Alu -15 134 92 2 1444 210 167 0 0 chr6 112633107 112633143 -36883894 + A-rich Low_complexity Low_complexity 1 36 0 2 1444 222 316 0 0 chr6 112633146 112633203 -36883834 + B1F1 SINE Alu 1 57 -92 2 1444 210 387 21 0 chr6 112633203 112633238 -36883799 + ID_B1 SINE B4 82 175 -49 2 1444 289 274 21 32 chr6 112633259 112633370 -36883667 + GA-rich Low_complexity Low_complexity 1 109 0 2 1444 26 30 0 0 chr6 112633387 112633420 -36883617 + AT_rich Low_complexity Low_complexity 1 33 0 2 1444 354 45 0 0 chr6 112633424 112633468 -36883569 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1444 192 336 69 15 chr6 112634063 112634193 -36882844 - L2a LINE L2 -263 3163 3027 2 1444 22 56 0 0 chr6 112634997 112635033 -36882004 + AT_rich Low_complexity Low_complexity 1 36 0 2 1444 519 331 78 22 chr6 112635390 112635659 -36881378 + B4A SINE B4 9 292 0 2 1444 329 257 48 38 chr6 112636284 112636389 -36880648 + L1MD3 LINE L1 6616 6721 -1274 2 1444 25 0 0 0 chr6 112637940 112637965 -36879072 + AT_rich Low_complexity Low_complexity 1 25 0 2 1444 268 245 136 27 chr6 112638899 112639046 -36877991 + L1MCa LINE L1 71 233 -6275 2 1444 3412 196 69 28 chr6 112639120 112639559 -36877478 + ORR1D1-int LTR MaLR 4 477 -893 2 1444 843 34 248 0 chr6 112639559 112639676 -36877361 - B1_Mm SINE Alu 0 147 2 2 1444 3412 196 69 28 chr6 112639676 112640020 -36877017 + ORR1D1-int LTR MaLR 478 819 -551 2 1444 632 232 48 78 chr6 112640038 112640333 -36876704 + RLTR15 LTR ERVK 38 323 -36 2 1444 2817 158 63 22 chr6 112640352 112640908 -36876129 + ORR1D1-int LTR MaLR 792 1370 0 2 1444 1486 198 49 130 chr6 112640908 112641183 -36875854 + ORR1D1 LTR MaLR 1 228 -146 2 1444 297 0 0 0 chr6 112641183 112641216 -36875821 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2 1444 1486 198 49 130 chr6 112641216 112641347 -36875690 + ORR1D1 LTR MaLR 229 372 -2 2 1444 346 256 68 83 chr6 112641633 112641765 -36875272 + ORR1D1 LTR MaLR 229 358 -16 2 1444 607 241 201 32 chr6 112641865 112642084 -36874953 - B4A SINE B4 -34 258 3 2 1444 451 348 60 62 chr6 112642674 112643089 -36873948 + MER47B DNA MER2_type 1 418 0 2 1444 337 143 0 0 chr6 112643903 112643959 -36873078 - MTC LTR MaLR -365 56 1 2 1444 295 242 97 21 chr6 112644011 112644104 -36872933 + PB1D7 SINE Alu 20 119 -1 2 1444 248 307 128 26 chr6 112644501 112644513 -36872524 + B4 SINE B4 76 99 -193 2 1444 671 194 64 7 chr6 112644513 112644653 -36872384 + B1F2 SINE Alu 2 149 0 2 1444 252 0 0 0 chr6 112644653 112644681 -36872356 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1444 717 229 125 0 chr6 112644869 112645061 -36871976 + B3 SINE B2 1 216 0 2 1444 789 174 7 7 chr6 112645276 112645421 -36871616 + B1_Mus1 SINE Alu 2 146 -2 2 1444 253 153 0 48 chr6 112645531 112645593 -36871444 + B1_Mur3 SINE Alu 89 147 -2 2 1444 718 105 116 39 chr6 112645744 112645873 -36871164 + B1_Mur4 SINE Alu 5 143 -7 2 1444 25 31 0 0 chr6 112646034 112646066 -36870971 + AT_rich Low_complexity Low_complexity 1 32 0 2 1444 605 291 11 11 chr6 112647164 112647355 -36869682 + MER31A LTR ERV1 76 266 -219 2 1444 198 0 0 0 chr6 112647854 112647876 -36869161 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1444 188 204 37 0 chr6 112648506 112648560 -36868477 + GA-rich Low_complexity Low_complexity 1 56 0 2 1444 599 186 51 23 chr6 112649085 112649261 -36867776 - MER53 DNA hAT -12 181 1 2 1444 200 319 11 11 chr6 112649417 112649512 -36867525 + CT-rich Low_complexity Low_complexity 4 98 0 2 1444 223 224 0 39 chr6 112649422 112649473 -36867564 + polypyrimidine Low_complexity Low_complexity 2 50 0 2 1444 341 250 40 0 chr6 112649513 112649589 -36867448 - ID2 SINE ID -4 79 1 2 1444 511 241 37 181 chr6 112649629 112649713 -36867324 - B3 SINE B2 -8 208 127 2 1444 696 83 0 0 chr6 112649713 112649809 -36867228 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 2 1444 511 241 37 181 chr6 112649809 112649967 -36867070 - B3 SINE B2 -90 126 1 2 1444 204 274 47 57 chr6 112650069 112650204 -36866833 - L2c LINE L2 -1 3374 3237 2 1444 194 231 0 0 chr6 112650311 112650350 -36866687 + MIR SINE MIR 106 144 -118 2 1444 434 255 0 0 chr6 112650704 112650814 -36866223 + PB1D9 SINE Alu 11 120 0 2 1444 519 230 101 7 chr6 112650972 112651121 -36865916 + Lx8 LINE L1 6989 7151 -322 2 1444 1873 154 6 24 chr6 112651127 112651460 -36865577 + ORR1A4 LTR MaLR 2 328 -1 2 1444 2164 105 137 3 chr6 112651461 112651833 -36865204 + ORR1A4-int LTR MaLR 1 422 -1541 2 1444 3564 96 6 0 chr6 112651824 112652349 -36864688 + ORR1A4-int LTR MaLR 832 1359 -604 2 1444 2626 88 12 8 chr6 112652349 112652750 -36864287 + RLTR9D LTR ERVK 1 403 0 2 1444 822 260 23 72 chr6 112652752 112653059 -36863978 + ETnERV2-int LTR ERVK 3 294 -3020 2 1444 1246 48 0 0 chr6 112653063 112653209 -36863828 + B1_Mm SINE Alu 1 146 -1 2 1444 2829 122 129 28 chr6 112653320 112653861 -36863176 + ETnERV2-int LTR ERVK 1071 1666 -5740 2 1444 354 91 0 0 chr6 112653861 112653916 -36863121 + RLTR9F LTR ERVK 357 411 -4 2 1444 1880 116 31 1 chr6 112653917 112654240 -36862797 + ORR1A4-int LTR MaLR 1354 1667 -296 2 1444 373 152 14 3 chr6 112654257 112654340 -36862697 + ORR1A4 LTR MaLR 161 247 -99 2 1444 727 244 102 35 chr6 112654362 112654647 -36862390 + Lx8 LINE L1 7169 7472 -1 2 1444 1959 95 3 71 chr6 112654843 112655193 -36861844 - IAPLTR1a_Mm LTR ERVK -11 326 1 2 1444 59238 9 5 5 chr6 112655193 112661674 -36855363 - IAPEz-int LTR ERVK 0 6481 1 2 1444 1959 95 3 71 chr6 112661675 112662025 -36855012 - IAPLTR1a_Mm LTR ERVK -11 326 1 2 1444 252 185 160 48 chr6 112662194 112662319 -36854718 - L2a LINE L2 -10 3416 3278 2 1444 1101 95 0 0 chr6 112662323 112662471 -36854566 - B1_Mus1 SINE Alu 0 148 1 2 1444 1958 160 81 3 chr6 112662735 112663118 -36853919 - MTD LTR MaLR -6 413 1 2 1444 22 0 0 0 chr6 112663439 112663461 -36853576 + AT_rich Low_complexity Low_complexity 1 22 0 2 1444 438 259 104 22 chr6 112663476 112663610 -36853427 - RSINE1 SINE B4 -19 146 2 2 1444 560 140 0 0 chr6 112663868 112663961 -36853076 + MTD LTR MaLR 47 139 -280 2 1444 1472 58 15 31 chr6 112664497 112664692 -36852345 - B2_Mm2 SINE B2 -2 193 2 2 1444 3174 45 37 0 chr6 112665158 112665540 -36851497 - MTA_Mm LTR MaLR 0 396 1 2 1444 775 183 103 27 chr6 112665554 112665739 -36851298 + MTD LTR MaLR 3 201 -218 2 1444 276 298 121 32 chr6 112667004 112667147 -36849890 + L2b LINE L2 3247 3381 -6 2 1444 1696 138 53 47 chr6 112667531 112667850 -36849187 - RMER6A LTR ERVK -435 321 1 2 1444 180 341 72 65 chr6 112670546 112670684 -36846353 + MIRm SINE MIR 16 154 -122 2 1444 423 0 0 0 chr6 112671095 112671142 -36845895 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1444 315 0 0 0 chr6 112671142 112671177 -36845860 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1444 450 53 0 0 chr6 112671175 112671232 -36845805 + (GGA)n Simple_repeat Simple_repeat 2 58 0 2 1444 297 277 0 0 chr6 112672332 112672444 -36844593 + (TA)n Simple_repeat Simple_repeat 1 112 0 2 1444 354 307 117 36 chr6 112673411 112673607 -36843430 + MIRb SINE MIR 46 257 -11 2 1444 555 248 86 20 chr6 112673673 112673825 -36843212 - MIR SINE MIR -95 167 6 2 1444 791 211 167 0 chr6 112673864 112674044 -36842993 + B3 SINE B2 2 211 -5 2 1444 215 79 26 0 chr6 112676534 112676572 -36840465 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1444 221 235 0 0 chr6 112676888 112676939 -36840098 + (TGGA)n Simple_repeat Simple_repeat 2 52 0 2 1444 441 0 0 0 chr6 112679129 112679178 -36837859 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1444 204 40 0 0 chr6 112679196 112679221 -36837816 + (CG)n Simple_repeat Simple_repeat 2 26 0 2 1444 207 133 0 0 chr6 112679255 112679300 -36837737 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1444 21 0 0 0 chr6 112679357 112679378 -36837659 + AT_rich Low_complexity Low_complexity 1 21 0 2 1444 433 275 32 3 chr6 112681700 112681802 -36835235 + B1F1 SINE Alu 3 107 -13 2 1444 180 0 0 0 chr6 112681802 112681822 -36835215 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1444 409 307 25 34 chr6 112681822 112681837 -36835200 + PB1D9 SINE Alu 108 119 -1 2 1444 394 242 143 0 chr6 112681912 112682003 -36835034 + PB1D10 SINE Alu 2 105 -12 2 1444 234 0 0 0 chr6 112682003 112682029 -36835008 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 1444 285 29 0 0 chr6 112682029 112682062 -36834975 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1444 315 0 0 0 chr6 112682062 112682096 -36834941 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1444 362 274 2 0 chr6 112682263 112682359 -36834678 - ID4_ SINE ID -53 99 3 2 1444 450 235 73 7 chr6 112682385 112682522 -36834515 + L1M4 LINE L1 2934 3079 -3067 2 1444 880 197 108 57 chr6 112682524 112682718 -36834319 + B3 SINE B2 7 210 -6 2 1444 506 297 63 49 chr6 112682736 112683086 -36833951 + L1M4 LINE L1 3087 3441 -2705 2 1444 504 308 23 8 chr6 112683097 112683228 -36833809 + RSINE1 SINE B4 2 134 -31 2 1444 332 273 78 111 chr6 112683297 112683524 -36833513 + B4A SINE B4 45 257 -35 2 1444 1354 289 47 10 chr6 112683565 112684154 -36832883 + L1M4 LINE L1 3406 4025 -2121 2 1444 695 287 72 20 chr6 112684155 112684404 -36832633 + B4A SINE B4 3 264 -28 3 1444 689 159 22 22 chr6 112684544 112684679 -36832358 + ORR1D1 LTR MaLR 1 135 -239 3 1444 596 146 19 0 chr6 112684677 112684780 -36832257 + ORR1D1 LTR MaLR 270 374 0 3 1444 802 241 55 8 chr6 112684799 112685054 -36831983 + L1M4 LINE L1 5079 5345 -801 2 1444 245 317 65 28 chr6 112685996 112686103 -36830934 + MLT1K LTR MaLR 1 111 -254 3 1444 273 250 0 0 chr6 112686443 112686535 -36830502 + (TG)n Simple_repeat Simple_repeat 2 93 0 3 1444 468 254 45 0 chr6 112687287 112687397 -36829640 + PB1D10 SINE Alu 3 117 0 3 1444 270 261 0 64 chr6 112687596 112687690 -36829347 - L1MA7 LINE L1 -7 6284 6197 3 1444 649 222 43 91 chr6 112687718 112687926 -36829111 - B3A SINE B2 0 198 1 3 1444 266 323 40 20 chr6 112687930 112688031 -36829006 - BC1_Mm scRNA scRNA -49 103 1 3 1444 456 346 164 10 chr6 112688408 112688720 -36828317 + MLT1K LTR MaLR 230 589 -6 3 1444 506 188 61 26 chr6 112692015 112692130 -36824907 - PB1D9 SINE Alu -1 119 1 3 1444 520 286 38 19 chr6 112692503 112692660 -36824377 - B4A SINE B4 -83 209 50 3 1444 244 284 111 22 chr6 112692809 112692899 -36824138 + MER2 DNA MER2_type 2 99 -246 3 1444 570 266 94 0 chr6 112692992 112693120 -36823917 - RSINE1 SINE B4 -12 153 14 3 1444 321 317 131 12 chr6 112693146 112693398 -36823639 - L1MC LINE L1 -2149 5733 5452 3 1444 234 156 0 0 chr6 112693993 112694038 -36822999 + (CACCAT)n Simple_repeat Simple_repeat 5 49 0 3 1444 290 198 166 0 chr6 112695551 112695645 -36821392 + B1F1 SINE Alu 13 128 -21 3 1444 431 209 0 9 chr6 112696107 112696218 -36820819 + (CATA)n Simple_repeat Simple_repeat 4 113 0 3 1444 376 291 34 25 chr6 112696218 112696254 -36820783 + ID SINE ID 37 78 -146 3 1444 364 255 123 38 chr6 112696254 112696360 -36820677 + PB1D10 SINE Alu 1 115 -2 3 1444 447 232 10 10 chr6 112696675 112696771 -36820266 - MER63D DNA AcHobo -693 368 273 3 1444 252 243 41 41 chr6 112697323 112697396 -36819641 + ID4 SINE ID 2 74 -9 3 1444 182 37 0 36 chr6 112697398 112697426 -36819611 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 1444 421 281 8 50 chr6 112697436 112697556 -36819481 + PB1D7 SINE Alu 6 120 0 3 1444 438 274 28 0 chr6 112698018 112698124 -36818913 - B1F1 SINE Alu -33 116 8 3 1444 358 316 25 42 chr6 112698124 112698137 -36818900 - ID_B1 SINE B4 -30 194 78 3 1444 775 310 88 7 chr6 112698388 112698693 -36818344 + MER2 DNA MER2_type 15 344 -1 3 1444 759 105 0 0 chr6 112699046 112699179 -36817858 + (GA)n Simple_repeat Simple_repeat 2 134 0 3 1444 203 349 110 0 chr6 112701438 112701547 -36815490 - MIR SINE MIR -24 238 118 3 1444 582 28 0 0 chr6 112702306 112702378 -36814659 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1444 582 286 91 3 chr6 112702381 112702615 -36814422 - B4 SINE B4 -3 289 1 3 1444 249 194 16 16 chr6 112702880 112702923 -36814114 + (TTCTG)n Simple_repeat Simple_repeat 1 43 0 3 1444 1230 27 0 27 chr6 112702923 112703073 -36813964 - B1_Mm SINE Alu 0 147 2 3 1444 249 194 16 16 chr6 112703073 112703092 -36813945 + (TTCTG)n Simple_repeat Simple_repeat 2 20 0 3 1444 2460 156 54 13 chr6 112703355 112703803 -36813234 + RMER4A LTR ERVK 1 466 0 3 1444 195 100 0 0 chr6 112705416 112705446 -36811591 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 3 1444 1194 219 5 5 chr6 112705949 112706169 -36810868 - ID_B1 SINE B4 -3 221 2 3 1444 187 282 0 0 chr6 112706438 112706477 -36810560 - L3b LINE CR1 -73 409 371 3 1444 216 0 0 0 chr6 112707252 112707276 -36809761 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1444 299 148 0 0 chr6 112708182 112708236 -36808801 - B1_Mur4 SINE Alu 0 150 97 3 1444 387 0 0 0 chr6 112708241 112708284 -36808753 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 3 1444 657 0 0 0 chr6 112708284 112708356 -36808681 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 3 1444 240 111 0 0 chr6 112709640 112709685 -36807352 + (CCCA)n Simple_repeat Simple_repeat 2 46 0 3 1444 363 281 83 25 chr6 112709874 112710078 -36806959 - L1MB8 LINE L1 -152 6026 5811 3 1444 335 114 29 0 chr6 112710080 112710150 -36806887 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 3 1444 808 60 0 0 chr6 112710150 112710250 -36806787 - B1_Mm SINE Alu -2 145 46 3 1444 263 273 71 48 chr6 112710170 112710318 -36806719 - RLTR25B LTR ERVK -531 572 403 3 1444 2849 150 86 6 chr6 112710331 112710821 -36806216 + RMER15 LTR ERVL 1 529 -46 3 1444 205 29 29 29 chr6 112711532 112711567 -36805470 + (TTG)n Simple_repeat Simple_repeat 1 35 0 3 1444 650 201 175 6 chr6 112711576 112711736 -36805301 - ID_B1 SINE B4 -37 187 1 3 1444 1065 122 0 0 chr6 112713573 112713721 -36803316 + B1_Mur3 SINE Alu 2 149 0 3 1444 225 0 0 0 chr6 112713833 112713858 -36803179 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1444 1412 104 0 5 chr6 112713918 112714112 -36802925 - B2_Mm2 SINE B2 -1 194 2 3 1444 983 140 0 0 chr6 112714284 112714427 -36802610 + B1_Mur1 SINE Alu 2 144 -5 3 1444 536 237 28 78 chr6 112714646 112714788 -36802249 + ID_B1 SINE B4 87 221 -3 3 1444 372 206 87 14 chr6 112714798 112714936 -36802101 + L1MC3 LINE L1 7638 7785 0 3 1444 232 306 106 46 chr6 112715491 112715642 -36801395 + RLTR33 LTR ERVK 516 675 -3 3 1444 318 298 53 11 chr6 112716005 112716100 -36800937 + PB1D10 SINE Alu 18 116 -1 3 1444 285 29 0 0 chr6 112716125 112716159 -36800878 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1444 401 0 20 0 chr6 112716159 112716207 -36800830 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1444 240 333 54 0 chr6 112716209 112716302 -36800735 + L1ME1 LINE L1 5964 6061 -118 3 1444 414 0 0 0 chr6 112717612 112717658 -36799379 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1444 351 0 0 0 chr6 112717658 112717696 -36799341 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1444 417 244 137 29 chr6 112717886 112718025 -36799012 + ID_B1 SINE B4 67 220 -4 3 1444 282 160 0 0 chr6 112718454 112718504 -36798533 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1444 255 268 24 0 chr6 112719049 112719131 -36797906 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 3 1444 3223 56 2 22 chr6 112719309 112719343 -36797694 + MTA_Mm LTR MaLR 1 32 -364 3 1444 216 0 0 0 chr6 112719343 112719367 -36797670 + (TATG)n Simple_repeat Simple_repeat 1 24 0 3 1444 3223 56 2 22 chr6 112719367 112719736 -36797301 + MTA_Mm LTR MaLR 33 396 0 3 1444 181 386 34 0 chr6 112719736 112719824 -36797213 + L3 LINE CR1 3273 3363 -1126 3 1444 184 346 87 19 chr6 112720302 112720405 -36796632 + L3 LINE CR1 4034 4143 -346 3 1444 962 175 130 0 chr6 112720901 112721101 -36795936 + URR1A DNA MER1_type 1 226 0 3 1445 242 270 37 83 chr6 112722824 112722933 -36794104 - L3 LINE CR1 -235 4273 4158 3 1445 778 356 72 0 chr6 112724122 112724442 -36792595 + MER2 DNA MER2_type 3 345 0 3 1445 1074 186 27 14 chr6 112725194 112725417 -36791620 - URR1A DNA MER1_type 0 226 1 3 1445 228 306 0 16 chr6 112726108 112726171 -36790866 + L2b LINE L2 3309 3370 -5 3 1445 226 246 119 60 chr6 112728323 112728457 -36788580 - MIRc SINE MIR -125 143 2 3 1445 1281 299 143 25 chr6 112728463 112729092 -36787945 - L1MB5 LINE L1 -139 6035 5333 3 1445 1035 224 20 0 chr6 112729092 112729293 -36787744 + B3 SINE B2 4 208 -8 3 1445 372 43 0 0 chr6 112729394 112729440 -36787597 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1445 635 234 42 14 chr6 112729703 112729846 -36787191 - MER117 DNA MER1_type -44 153 7 3 1445 1089 256 60 11 chr6 112729904 112730173 -36786864 + B4A SINE B4 1 282 -10 3 1445 1058 274 44 70 chr6 112730368 112730783 -36786254 + MTE2a LTR MaLR 1 405 -14 3 1445 224 100 25 0 chr6 112731252 112731292 -36785745 + (CAT)n Simple_repeat Simple_repeat 1 41 0 3 1445 360 0 0 0 chr6 112732082 112732122 -36784915 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1445 1039 193 89 0 chr6 112732257 112732459 -36784578 + URR1A DNA MER1_type 1 220 -6 3 1445 850 276 130 35 chr6 112732900 112733215 -36783822 - MER2 DNA MER2_type 0 345 1 3 1445 203 380 96 15 chr6 112733445 112733515 -36783522 - MIR SINE MIR -15 247 174 3 1445 319 16 45 45 chr6 112733515 112733581 -36783456 + (CAAA)n Simple_repeat Simple_repeat 3 68 0 3 1445 203 380 96 15 chr6 112733581 112733708 -36783329 - MIR SINE MIR -89 173 34 3 1445 12865 74 21 6 chr6 112733983 112735811 -36781226 + MusHAL1 LINE L1 214 2069 -643 3 1445 189 0 0 0 chr6 112735811 112735832 -36781205 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1445 3452 35 2 0 chr6 112736218 112736613 -36780424 + MTA_Mm LTR MaLR 1 396 0 3 1445 224 261 29 14 chr6 112736809 112736879 -36780158 + (TGGA)n Simple_repeat Simple_repeat 4 74 0 3 1445 221 140 0 23 chr6 112736888 112736932 -36780105 + GA-rich Low_complexity Low_complexity 2 44 0 3 1445 180 361 48 40 chr6 112737017 112737141 -36779896 - L2c LINE L2 -18 3408 3284 3 1445 220 365 33 61 chr6 112737198 112737379 -36779658 - L2c LINE L2 -232 3155 2980 3 1445 725 260 86 79 chr6 112737427 112737719 -36779318 + MLT1K LTR MaLR 4 297 -298 3 1445 388 143 24 0 chr6 112737833 112737917 -36779120 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 3 1445 210 304 0 0 chr6 112737921 112737977 -36779060 + GA-rich Low_complexity Low_complexity 3 58 0 3 1445 271 246 95 14 chr6 112738214 112738288 -36778749 + MLT1H LTR MaLR 1 80 -328 3 1445 862 297 67 15 chr6 112739458 112739786 -36777251 + MER2 DNA MER2_type 1 345 0 3 1445 324 350 31 18 chr6 112739871 112740034 -36777003 + MIR SINE MIR 63 227 -35 3 1445 683 224 30 0 chr6 112740541 112740675 -36776362 + B4 SINE B4 147 284 -8 3 1445 363 96 0 0 chr6 112740713 112740765 -36776272 + (CACG)n Simple_repeat Simple_repeat 1 52 0 3 1445 194 314 34 34 chr6 112740774 112740863 -36776174 - MIR3 SINE MIR -115 93 5 3 1445 445 214 50 10 chr6 112741884 112741983 -36775054 + MLT1H LTR MaLR 433 535 -14 3 1445 621 295 82 86 chr6 112742240 112742544 -36774493 - MER2 DNA MER2_type -3 342 40 3 1445 422 309 100 83 chr6 112742552 112742915 -36774122 - ORR1E LTR MaLR -2 368 11 4 1445 1514 201 144 38 chr6 112743054 112743422 -36773615 + MTD LTR MaLR 13 419 0 4 1445 770 338 99 16 chr6 112743802 112744115 -36772922 + MER2 DNA MER2_type 6 344 -1 4 1445 315 284 66 22 chr6 112744340 112744477 -36772560 - B1F SINE Alu -6 143 1 4 1445 829 253 119 83 chr6 112744552 112744928 -36772109 - MTE2a LTR MaLR -14 405 19 4 1445 261 188 0 59 chr6 112744947 112744998 -36772039 + B1_Mus1 SINE Alu 1 48 -100 4 1445 239 273 153 55 chr6 112746354 112746517 -36770520 + MLT1L LTR MaLR 432 610 0 4 1445 222 322 106 11 chr6 112746595 112746689 -36770348 - L2 LINE L2 -497 2922 2820 4 1445 311 368 19 44 chr6 112747495 112747654 -36769383 + MER102b DNA MER1_type 19 173 -168 4 1445 521 339 48 27 chr6 112747867 112748055 -36768982 - RMER30 DNA MER1_type -1 201 10 4 1445 401 348 99 28 chr6 112748281 112748494 -36768543 - MIR SINE MIR -15 247 20 4 1445 480 332 74 63 chr6 112749467 112749817 -36767220 + MLT1A0 LTR MaLR 12 365 0 4 1445 4238 275 47 36 chr6 112750359 112751033 -36766004 + Lx8 LINE L1 6198 6856 -617 4 1445 285 98 0 0 chr6 112751033 112751074 -36765963 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1445 4238 275 47 36 chr6 112751074 112751662 -36765375 + Lx8 LINE L1 6857 7473 0 4 1445 542 273 83 14 chr6 112751707 112751852 -36765185 + RSINE1 SINE B4 11 165 0 4 1445 306 253 34 67 chr6 112752102 112752191 -36764846 + L1MEg LINE L1 1836 1921 -4163 4 1445 1077 262 72 12 chr6 112752856 112753188 -36763849 + ORR1E LTR MaLR 4 355 -4 4 1445 261 0 0 0 chr6 112753573 112753602 -36763435 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1445 348 83 0 0 chr6 112753602 112753650 -36763387 + (TGG)n Simple_repeat Simple_repeat 3 50 0 4 1445 315 303 92 92 chr6 112754082 112754311 -36762726 - Tigger10 DNA Tigger -252 1591 1363 4 1445 753 199 0 0 chr6 112754333 112754581 -36762456 + (TCCA)n Simple_repeat Simple_repeat 1 248 0 4 1445 535 362 0 0 chr6 112754583 112754760 -36762277 + (CCCA)n Simple_repeat Simple_repeat 1 177 0 4 1445 3823 82 31 2 chr6 112754857 112755371 -36761666 + L1_Mus3 LINE L1 6110 6638 0 4 1445 3333 32 51 0 chr6 112755909 112756119 -36760918 + RLTR10C LTR ERVK 1 222 -214 4 1445 270 0 0 0 chr6 112756119 112756149 -36760888 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1445 3333 32 51 0 chr6 112756149 112756348 -36760689 + RLTR10C LTR ERVK 223 429 -7 4 1445 288 238 147 10 chr6 112756407 112756509 -36760528 - PB1 SINE Alu -9 118 3 4 1445 708 202 24 0 chr6 112756663 112756787 -36760250 - B3 SINE B2 -88 128 2 4 1445 556 339 80 14 chr6 112756801 112757076 -36759961 + MTD LTR MaLR 65 357 -62 4 1445 225 293 0 35 chr6 112757549 112757634 -36759403 - L1M LINE L1 -859 5335 5254 4 1445 317 337 20 51 chr6 112757798 112757846 -36759191 + L1M5 LINE L1 2809 2851 -3295 4 1445 801 211 7 20 chr6 112757846 112757996 -36759041 + B1_Mur1 SINE Alu 2 149 0 4 1445 317 337 20 51 chr6 112757996 112758144 -36758893 + L1M5 LINE L1 2852 2999 -3147 4 1445 402 21 0 0 chr6 112758442 112758489 -36758548 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 4 1445 246 322 126 8 chr6 112758648 112758767 -36758270 - MIRb SINE MIR -10 258 126 4 1445 249 279 134 9 chr6 112759471 112759583 -36757454 + MIR SINE MIR 122 247 -15 4 1445 431 240 135 8 chr6 112760420 112760546 -36756491 + MER5A DNA MER1_type 48 189 0 4 1445 663 203 0 16 chr6 112760690 112760815 -36756222 - ID_B1 SINE B4 -7 217 95 4 1445 269 280 108 97 chr6 112760719 112760855 -36756182 - MT2B LTR ERVL -336 265 134 4 1445 608 217 40 40 chr6 112760815 112760832 -36756205 - B1F1 SINE Alu 0 113 1 4 1445 993 133 141 84 chr6 112760855 112761068 -36755969 + URR1B DNA MER1_type 1 225 0 4 1445 269 280 108 97 chr6 112761068 112761117 -36755920 - MT2B LTR ERVL -468 133 78 4 1445 1123 200 192 10 chr6 112761371 112761679 -36755358 - ORR1D1 LTR MaLR -7 367 4 4 1445 221 310 0 0 chr6 112762227 112762285 -36754752 + L3 LINE CR1 4285 4342 -147 4 1445 654 355 116 55 chr6 112762354 112762879 -36754158 + MLT1K LTR MaLR 34 590 -5 4 1445 240 292 14 27 chr6 112762986 112763060 -36753977 - ID4 SINE ID -9 74 2 4 1445 1282 27 0 0 chr6 112763175 112763323 -36753714 + B1_Mus1 SINE Alu 1 148 0 4 1445 237 65 0 0 chr6 112763601 112763632 -36753405 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1445 441 262 31 8 chr6 112763772 112763899 -36753138 - B1F SINE Alu -7 142 13 4 1445 676 200 33 13 chr6 112763959 112764111 -36752926 + B3A SINE B2 3 157 -41 4 1445 238 267 156 0 chr6 112764265 112764355 -36752682 - MIRb SINE MIR -117 151 48 4 1445 248 262 16 0 chr6 112765354 112765415 -36751622 - MIRm SINE MIR -127 149 88 4 1445 225 0 0 0 chr6 112765860 112765885 -36751152 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1445 240 281 0 0 chr6 112767370 112767434 -36749603 + MER5A DNA MER1_type 120 183 -6 4 1445 205 259 86 0 chr6 112767976 112768034 -36749003 + MER5A DNA MER1_type 17 79 -110 4 1445 605 96 0 11 chr6 112768222 112768317 -36748720 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 4 1445 315 280 73 39 chr6 112768433 112768623 -36748414 + L2c LINE L2 2953 3161 -226 4 1445 266 311 155 0 chr6 112768645 112768793 -36748244 + MER5A DNA MER1_type 13 183 -6 4 1445 318 285 53 40 chr6 112768799 112768934 -36748103 + ORR1E LTR MaLR 1 124 -241 4 1445 456 19 0 0 chr6 112769022 112769075 -36747962 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1445 209 328 63 39 chr6 112769201 112769328 -36747709 + L2b LINE L2 3228 3357 -18 4 1445 417 20 0 0 chr6 112769394 112769444 -36747593 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1445 666 78 0 0 chr6 112769450 112769552 -36747485 + (GA)n Simple_repeat Simple_repeat 1 102 0 4 1445 291 122 0 0 chr6 112769565 112769614 -36747423 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 4 1445 205 349 70 0 chr6 112769838 112769924 -36747113 - MER5B DNA MER1_type -86 92 1 4 1445 284 253 7 20 chr6 112770025 112770178 -36746859 + (TGGA)n Simple_repeat Simple_repeat 4 154 0 4 1445 366 228 25 0 chr6 112771905 112771984 -36745053 + ORR1E LTR MaLR 5 85 -285 4 1445 391 203 70 31 chr6 112772006 112772118 -36744919 + ORR1E LTR MaLR 256 370 0 4 1445 291 71 0 0 chr6 112774011 112774053 -36742984 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1445 356 279 10 0 chr6 112774742 112774846 -36742191 + (TG)n Simple_repeat Simple_repeat 1 105 0 4 1445 668 261 126 34 chr6 112774852 112774874 -36742163 - B4A SINE B4 -2 290 270 4 1445 1048 111 0 11 chr6 112774874 112775056 -36741981 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1445 668 261 126 34 chr6 112775056 112775295 -36741742 - B4A SINE B4 -23 269 5 4 1445 245 224 338 14 chr6 112775363 112775508 -36741529 - MER113 DNA MER1_type -179 342 151 4 1445 280 295 114 57 chr6 112775909 112776067 -36740970 + MIRc SINE MIR 38 204 -64 4 1445 548 248 0 110 chr6 112776929 112777074 -36739963 + B1_Mm SINE Alu 7 135 -12 4 1445 209 309 44 0 chr6 112777354 112777422 -36739615 - MER5A DNA MER1_type -74 115 45 4 1445 187 361 82 0 chr6 112777567 112777628 -36739409 - L2b LINE L2 -3 3372 3307 4 1445 640 260 0 8 chr6 112777847 112777975 -36739062 - RSINE1 SINE B4 -36 129 3 4 1445 407 346 120 17 chr6 112780644 112780944 -36736093 + Charlie2a DNA MER1_type 7 337 -2524 4 1445 4619 42 0 0 chr6 112780944 112781486 -36735551 + L1_Mus1 LINE L1 6026 6567 0 4 1445 405 195 52 126 chr6 112781491 112781505 -36735532 + MT2B LTR ERVL 154 157 -444 4 1445 870 134 8 0 chr6 112781505 112781632 -36735405 + B1_Mur3 SINE Alu 1 128 -21 4 1445 188 67 33 0 chr6 112781701 112781731 -36735306 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1445 511 269 56 20 chr6 112782370 112782567 -36734470 + Charlie2a DNA MER1_type 2638 2841 -20 4 1445 472 291 22 28 chr6 112782998 112783178 -36733859 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 4 1445 5485 10 2 0 chr6 112784738 112785340 -36731697 - L1Md_T LINE L1 0 6582 5980 4 1445 841 342 48 34 chr6 112785340 112786000 -36731037 - L1MC2 LINE L1 -30 6314 5645 4 1445 750 227 7 7 chr6 112786029 112786171 -36730866 + B1_Mur1 SINE Alu 8 149 0 4 1445 1140 187 5 19 chr6 112786285 112786498 -36730539 - B3 SINE B2 -6 210 1 4 1445 516 218 20 0 chr6 112786624 112786725 -36730312 + RSINE1 SINE B4 8 110 -55 4 1445 405 0 0 0 chr6 112786731 112786776 -36730261 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1445 180 330 62 52 chr6 112787373 112787469 -36729568 - MIRc SINE MIR -109 159 63 4 1445 609 311 82 0 chr6 112787922 112788179 -36728858 - B4A SINE B4 -13 279 2 4 1445 200 268 67 76 chr6 112788603 112788708 -36728329 + MIR SINE MIR 133 236 -26 4 1445 226 288 0 33 chr6 112788779 112788840 -36728197 + MIR SINE MIR 190 248 -14 4 1445 303 280 26 86 chr6 112789552 112789669 -36727368 + MIR3 SINE MIR 45 154 -54 4 1445 180 0 0 0 chr6 112790734 112790754 -36726283 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 4 1445 691 204 67 15 chr6 112790772 112790906 -36726131 - B1_Mur2 SINE Alu -8 141 1 4 1445 393 39 0 0 chr6 112790932 112790983 -36726054 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1445 1180 62 0 7 chr6 112790983 112791120 -36725917 - B1_Mus1 SINE Alu -11 137 1 4 1445 240 320 0 124 chr6 112791145 112791234 -36725803 - ID4 SINE ID -4 79 2 4 1445 627 300 53 28 chr6 112791332 112791579 -36725458 - MER113 DNA MER1_type -268 253 1 4 1445 580 284 142 83 chr6 112791678 112791931 -36725106 + MLT1D LTR MaLR 200 505 0 4 1445 377 277 29 19 chr6 112792003 112792106 -36724931 - MER58A DNA MER1_type -100 124 21 4 1445 204 136 22 43 chr6 112792124 112792170 -36724867 + T-rich Low_complexity Low_complexity 3 47 0 4 1445 570 29 0 0 chr6 112792736 112792804 -36724233 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1445 334 22 0 62 chr6 112792804 112792841 -36724196 - HAL1-3A_ME LINE L1 -847 2011 1976 4 1445 232 206 14 14 chr6 112792850 112792919 -36724118 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1445 337 300 150 58 chr6 112793341 112793695 -36723342 - ORR1E LTR MaLR -13 361 4 5 1445 1192 68 0 0 chr6 112793728 112793874 -36723163 + B1_Mus2 SINE Alu 1 146 -1 5 1445 1200 143 45 27 chr6 112794161 112794383 -36722654 + URR1A DNA MER1_type 1 226 0 5 1445 238 347 109 20 chr6 112794446 112794593 -36722444 + RMER15 LTR ERVL 351 510 -65 5 1445 608 273 180 0 chr6 112794678 112794861 -36722176 + ID_B1 SINE B4 5 220 -4 5 1445 189 0 0 0 chr6 112795627 112795648 -36721389 + (TCCTG)n Simple_repeat Simple_repeat 4 24 0 5 1445 307 240 93 10 chr6 112795969 112796066 -36720971 + PB1D9 SINE Alu 1 105 -15 5 1445 375 207 10 94 chr6 112796417 112796429 -36720608 + MT2B LTR ERVL 153 156 -445 5 1445 623 210 71 14 chr6 112796429 112796569 -36720468 + B1_Mur2 SINE Alu 2 149 0 5 1445 2569 41 9 9 chr6 112797297 112797620 -36719417 + L1Md_F3 LINE L1 6262 6584 0 5 1445 227 358 47 9 chr6 112799180 112799287 -36717750 - L2b LINE L2 -184 3191 3081 5 1445 622 343 107 23 chr6 112799370 112799680 -36717357 + MER2 DNA MER2_type 1 336 -9 5 1445 850 240 10 39 chr6 112800447 112800655 -36716382 + B3 SINE B2 2 203 -13 5 1445 180 217 225 28 chr6 112801291 112801362 -36715675 + L2c LINE L2 3291 3375 -12 5 1445 214 365 96 53 chr6 112801854 112802062 -36714975 - MIRb SINE MIR -48 220 4 5 1445 417 290 69 36 chr6 112803493 112803689 -36713348 + Charlie8 DNA MER1_type 40 228 -2200 5 1445 603 0 0 0 chr6 112803699 112803766 -36713271 + (GTTTG)n Simple_repeat Simple_repeat 2 68 0 5 1445 419 267 12 0 chr6 112803766 112803852 -36713185 - ID_B1 SINE B4 -6 218 132 5 1445 285 221 50 131 chr6 112803852 112803865 -36713172 - PB1D10 SINE Alu -6 111 21 5 1445 468 252 19 0 chr6 112804639 112804746 -36712291 - PB1D9 SINE Alu -6 114 6 5 1445 538 291 127 78 chr6 112804776 112805212 -36711825 - L1MEd LINE L1 -4875 2121 1491 5 1445 297 221 59 0 chr6 112806383 112806451 -36710586 - MIR SINE MIR -74 188 117 5 1445 229 198 0 21 chr6 112806963 112807056 -36709981 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 1445 283 273 162 36 chr6 112807506 112807673 -36709364 - MIRb SINE MIR -21 247 60 5 1445 288 70 0 0 chr6 112807796 112807839 -36709198 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 5 1445 1073 115 0 13 chr6 112807861 112808011 -36709026 - B1_Mus1 SINE Alu 0 148 1 5 1445 443 309 95 5 chr6 112808070 112808259 -36708778 + MLT1F1 LTR MaLR 358 563 -6 5 1445 348 309 52 84 chr6 112808368 112808654 -36708383 + B4 SINE B4 2 278 -14 5 1445 236 241 112 108 chr6 112808770 112808984 -36708053 + L1MC4 LINE L1 7227 7441 -601 5 1445 647 282 111 31 chr6 112809203 112809528 -36707509 + L1MB3 LINE L1 5818 6168 -15 5 1445 348 106 20 41 chr6 112809558 112809656 -36707381 + (TAGA)n Simple_repeat Simple_repeat 1 96 0 5 1445 812 98 32 32 chr6 112809744 112809997 -36707040 + (TAGA)n Simple_repeat Simple_repeat 1 253 0 5 1445 219 325 59 67 chr6 112810003 112810138 -36706899 + B4A SINE B4 33 166 -126 5 1445 181 330 109 9 chr6 112811026 112811136 -36705901 + MIRc SINE MIR 113 233 -35 5 1445 184 355 71 24 chr6 112811221 112811348 -36705689 + MIR SINE MIR 81 213 -49 5 1445 464 302 97 120 chr6 112812918 112813268 -36703769 - ORR1E LTR MaLR 0 359 18 5 1445 270 0 0 0 chr6 112813593 112813623 -36703414 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 5 1445 628 228 58 7 chr6 112813630 112813767 -36703270 - RSINE1 SINE B4 -19 146 3 5 1445 855 297 52 25 chr6 112813852 112814176 -36702861 + ORR1E LTR MaLR 4 336 -23 5 1445 581 173 29 9 chr6 112814294 112814399 -36702638 - B1_Mur1 SINE Alu -7 142 36 5 1445 186 346 0 47 chr6 112815533 112815618 -36701419 - MIRc SINE MIR -114 154 74 5 1445 749 326 49 7 chr6 112816623 112816910 -36700127 - MER47A DNA MER2_type 0 366 68 5 1445 233 314 0 0 chr6 112816949 112817000 -36700037 - L2c LINE L2 -67 3320 3270 5 1445 2468 91 22 0 chr6 112817121 112817441 -36699596 - ORR1A2 LTR MaLR 0 327 1 5 1445 827 229 68 21 chr6 112817442 112817634 -36699403 - B3 SINE B2 -15 201 1 5 1445 308 351 0 37 chr6 112817895 112818031 -36699006 + RSINE1 SINE B4 8 138 -27 5 1445 253 267 128 41 chr6 112818943 112819110 -36697927 - MIRc SINE MIR -85 183 16 5 1445 436 297 66 167 chr6 112819935 112820368 -36696669 - MLT1C LTR MaLR 0 467 1 5 1445 806 316 46 26 chr6 112821562 112821978 -36695059 + L1MB3 LINE L1 5757 6180 -3 5 1445 1482 229 115 6 chr6 112822135 112822284 -36694753 - MTE2b LTR MaLR 0 379 206 5 1445 595 43 21 21 chr6 112822284 112822379 -36694658 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 5 1445 1482 229 115 6 chr6 112822379 112822567 -36694470 - MTE2b LTR MaLR -174 205 6 5 1445 237 274 27 0 chr6 112822793 112822866 -36694171 - MIRb SINE MIR -70 198 124 5 1445 232 338 52 70 chr6 112823204 112823433 -36693604 + L2b LINE L2 3147 3371 -4 5 1445 240 217 150 0 chr6 112823581 112823641 -36693396 + L2a LINE L2 3350 3418 -8 5 1445 265 358 115 47 chr6 112823964 112824286 -36692751 + ORR1E LTR MaLR 5 348 -11 5 1445 348 204 258 0 chr6 112824569 112824662 -36692375 - MTEa LTR MaLR -62 317 201 5 1445 268 231 50 25 chr6 112824753 112824833 -36692204 - ID4 SINE ID 0 83 2 5 1445 302 270 20 0 chr6 112825150 112825250 -36691787 - L1MA5 LINE L1 -4 6296 6195 5 1445 183 356 164 0 chr6 112827133 112827237 -36689800 + MIRb SINE MIR 37 157 -111 5 1445 676 257 120 0 chr6 112827537 112827720 -36689317 + ID_B1 SINE B4 1 205 -19 5 1445 264 91 0 0 chr6 112827721 112827765 -36689272 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1445 528 335 51 5 chr6 112828580 112828775 -36688262 - MLT1E2 LTR MaLR 0 627 424 5 1445 375 23 0 0 chr6 112828791 112828835 -36688202 + (GTCTG)n Simple_repeat Simple_repeat 4 47 0 5 1445 394 276 48 0 chr6 112828835 112828940 -36688097 - PB1D10 SINE Alu -7 110 1 5 1445 329 286 10 20 chr6 112828948 112829048 -36687989 - MLT1E2 LTR MaLR -417 210 112 5 1445 634 322 115 36 chr6 112829048 112829464 -36687573 + MLT1C LTR MaLR 1 449 -18 5 1445 317 275 60 5 chr6 112829494 112829594 -36687443 + ORR1E LTR MaLR 10 105 -260 5 1445 270 256 26 141 chr6 112829632 112829833 -36687204 + ORR1E LTR MaLR 206 405 -3 5 1445 392 298 29 0 chr6 112830697 112830801 -36686236 + PB1D10 SINE Alu 11 117 0 5 1445 1219 200 0 0 chr6 112831774 112831984 -36685053 + B3 SINE B2 1 210 -6 5 1445 596 236 63 0 chr6 112832035 112832162 -36684875 + RSINE1 SINE B4 3 137 -28 5 1445 447 19 0 0 chr6 112832603 112832655 -36684382 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1445 649 335 60 32 chr6 112832704 112832913 -36684124 - MER2 DNA MER2_type -53 292 72 5 1445 228 67 0 0 chr6 112832913 112832943 -36684094 + (TTTCG)n Simple_repeat Simple_repeat 2 31 0 5 1445 653 335 60 32 chr6 112832943 112833017 -36684020 - MER2 DNA MER2_type -274 71 3 5 1445 422 333 41 41 chr6 112833435 112833632 -36683405 + RMER15 LTR ERVL 379 575 0 5 1445 398 301 51 7 chr6 112834761 112834898 -36682139 + ID_B1 SINE B4 82 224 0 5 1445 940 194 222 26 chr6 112835696 112835966 -36681071 + MTEa LTR MaLR 1 323 -56 5 1445 1098 135 0 0 chr6 112836069 112836247 -36680790 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 5 1445 395 309 91 40 chr6 112836667 112836979 -36680058 + MLT1J2 LTR MaLR 117 425 -23 5 1445 275 333 104 15 chr6 112837003 112837137 -36679900 + MER117 DNA MER1_type 5 150 -47 5 1445 210 225 0 0 chr6 112837163 112837203 -36679834 + GA-rich Low_complexity Low_complexity 2 41 0 5 1445 325 265 121 87 chr6 112837203 112837352 -36679685 - FAM SINE Alu -17 294 141 5 1445 592 211 0 0 chr6 112837254 112837358 -36679679 - ID_B1 SINE B4 -40 184 81 5 1445 803 130 32 0 chr6 112837723 112837846 -36679191 + B1_Mur3 SINE Alu 15 141 -8 5 1445 188 67 33 0 chr6 112837873 112837903 -36679134 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 5 1445 1032 327 72 53 chr6 112839313 112839894 -36677143 + MER77 LTR ERVL 10 601 -6 5 1445 241 341 73 8 chr6 112839799 112839923 -36677114 + MER21B LTR ERV1 468 599 -264 5 1445 1190 55 7 0 chr6 112841379 112841524 -36675513 - B1_Mus2 SINE Alu 0 147 2 5 1445 274 291 104 40 chr6 112841540 112841690 -36675347 + MIR SINE MIR 1 165 -103 5 1445 340 260 48 2 chr6 112842638 112842747 -36674290 + B1F SINE Alu 19 145 -4 5 1445 715 298 85 5 chr6 112842780 112842979 -36674058 - B3 SINE B2 0 216 2 5 1445 543 31 0 0 chr6 112842981 112843046 -36673991 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 5 1445 560 250 0 0 chr6 112843048 112843152 -36673885 - ID_B1 SINE B4 -15 209 106 5 1445 381 297 136 0 chr6 112843152 112843166 -36673871 - B1_Mur1 SINE Alu -15 134 1 5 1445 753 114 0 0 chr6 112843406 112843520 -36673517 + (TTGG)n Simple_repeat Simple_repeat 2 115 0 5 1445 211 313 135 15 chr6 112843742 112843875 -36673162 - MIRm SINE MIR -108 168 20 5 1445 279 0 0 0 chr6 112844484 112844515 -36672522 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1445 270 262 0 32 chr6 112845208 112845271 -36671766 + MER45R DNA Tip100 1516 1576 -5 5 1445 1293 14 7 0 chr6 112845513 112845659 -36671378 + B1_Mus1 SINE Alu 2 148 0 5 1445 205 182 0 0 chr6 112845661 112845705 -36671332 + A-rich Low_complexity Low_complexity 1 44 0 5 1445 4681 33 0 7 chr6 112845727 112846280 -36670757 + L1Md_F2 LINE L1 6034 6582 0 5 1445 1047 109 18 24 chr6 112847871 112848040 -36668997 + RLTR13B3 LTR ERVK 1 168 -761 6 1445 661 267 51 8 chr6 112848213 112848434 -36668603 - L1MA6 LINE L1 -28 6272 6046 6 1445 212 246 97 16 chr6 112848434 112848496 -36668541 + MIRb SINE MIR 36 102 -166 6 1445 270 0 0 0 chr6 112848676 112848706 -36668331 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 6 1445 211 261 22 0 chr6 112850305 112850351 -36666686 - MIRm SINE MIR -192 84 38 6 1445 420 300 173 62 chr6 112851105 112851475 -36665562 + LTR16A LTR ERVL 30 440 -11 6 1445 194 271 127 43 chr6 112851576 112851728 -36665309 + MIRb SINE MIR 33 179 -89 6 1445 607 327 55 31 chr6 112852011 112852267 -36664770 + B4A SINE B4 1 262 -30 6 1445 396 0 0 0 chr6 112852349 112852393 -36664644 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1446 437 290 97 34 chr6 112853714 112853889 -36663148 - MER33 DNA MER1_type -8 316 131 6 1446 336 48 0 0 chr6 112853918 112853960 -36663077 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1446 904 207 0 96 chr6 112853977 112854175 -36662862 - B4 SINE B4 -23 269 91 6 1446 2756 97 128 22 chr6 112854274 112854610 -36662427 + Lx LINE L1 6148 6518 -136 6 1446 203 0 37 0 chr6 112854610 112854637 -36662400 + (TGGG)n Simple_repeat Simple_repeat 2 29 0 6 1446 2756 97 128 22 chr6 112854637 112854755 -36662282 + Lx LINE L1 6519 6648 -6 6 1446 231 333 94 0 chr6 112854773 112854869 -36662168 + L2a LINE L2 3322 3426 0 6 1446 322 330 0 0 chr6 112854923 112855017 -36662020 - MER81 DNA AcHobo -17 97 4 6 1446 513 0 0 0 chr6 112855348 112855405 -36661632 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 6 1446 1175 37 0 0 chr6 112855405 112855540 -36661497 - B1_Mus1 SINE Alu -11 137 3 6 1446 233 298 49 6 chr6 112855572 112855723 -36661314 - L1MA8 LINE L1 -38 6274 6117 6 1446 310 224 26 0 chr6 112855980 112856056 -36660981 - L1MA8 LINE L1 -385 5906 5829 6 1446 274 324 36 0 chr6 112856116 112856227 -36660810 - LTR16A LTR ERVL -147 304 190 6 1446 1321 243 60 19 chr6 112856479 112856794 -36660243 - MTE2a LTR MaLR -39 340 13 6 1446 294 73 0 0 chr6 112856795 112856836 -36660201 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 6 1446 620 320 70 50 chr6 112858050 112858494 -36658543 + L1MB8 LINE L1 5663 6115 -63 6 1446 522 172 70 10 chr6 112858494 112858594 -36658443 + PB1D7 SINE Alu 15 120 0 6 1446 229 279 0 37 chr6 112858598 112858680 -36658357 + L1ME1 LINE L1 6100 6178 -1 6 1446 763 265 16 27 chr6 112858914 112859100 -36657937 - B3A SINE B2 -6 192 9 6 1446 381 256 29 7 chr6 112859242 112859365 -36657672 - ID4_ SINE ID -18 134 8 6 1446 262 230 151 57 chr6 112859386 112859492 -36657545 - PB1D10 SINE Alu -1 116 1 6 1446 309 181 0 0 chr6 112859645 112859739 -36657298 + (CA)n Simple_repeat Simple_repeat 2 95 0 6 1446 1351 138 32 14 chr6 112859995 112860216 -36656821 - URR1B DNA MER1_type 0 225 1 6 1446 250 107 18 18 chr6 112860419 112860476 -36656561 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 6 1446 219 328 69 23 chr6 112861598 112861729 -36655308 + L2 LINE L2 2720 2856 -563 6 1446 208 280 123 57 chr6 112861751 112861786 -36655251 + MIR3 SINE MIR 11 41 -167 6 1446 486 0 0 0 chr6 112861786 112861840 -36655197 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1446 208 280 123 57 chr6 112861840 112861910 -36655127 + MIR3 SINE MIR 42 122 -86 6 1446 591 135 0 0 chr6 112862281 112862377 -36654660 + (TG)n Simple_repeat Simple_repeat 2 97 0 6 1446 548 309 103 27 chr6 112862849 112863072 -36653965 + MLT2B3 LTR ERVL 314 553 -1 6 1446 1085 149 110 38 chr6 112863119 112863269 -36653768 - URR1A DNA MER1_type -2 224 79 6 1446 2054 126 6 12 chr6 112863269 112863598 -36653439 - ORR1A2 LTR MaLR 0 327 1 6 1446 1085 149 110 38 chr6 112863598 112863656 -36653381 - URR1A DNA MER1_type -148 78 1 6 1446 884 312 97 9 chr6 112864172 112864605 -36652432 + L1MB3 LINE L1 5710 6180 -3 6 1446 663 264 27 0 chr6 112864834 112864982 -36652055 - RSINE1 SINE B4 -12 153 2 6 1446 303 256 42 92 chr6 112865491 112865633 -36651404 + L1MCa LINE L1 1825 1959 -4549 6 1446 184 114 44 22 chr6 112865635 112865680 -36651357 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 6 1446 1004 215 46 29 chr6 112865694 112865934 -36651103 - Lx8 LINE L1 -181 7292 7049 6 1446 1062 151 6 0 chr6 112865948 112866114 -36650923 - URR1A DNA MER1_type -2 224 58 6 1446 903 226 28 14 chr6 112866146 112866357 -36650680 - Lx8 LINE L1 -445 7028 6815 6 1446 1597 125 22 133 chr6 112867267 112867590 -36649447 + MTC LTR MaLR 1 287 -134 6 1446 1153 297 76 32 chr6 112869221 112869750 -36647287 + L1MA6 LINE L1 5705 6256 -44 6 1446 1377 74 4 49 chr6 112869796 112870022 -36647015 + Lx LINE L1 6434 6649 -5 6 1446 183 318 85 23 chr6 112870096 112870225 -36646812 + L2 LINE L2 1406 1542 -1877 6 1446 426 250 27 5 chr6 112871299 112871470 -36645567 + MER58A DNA MER1_type 3 206 -18 6 1446 484 15 31 0 chr6 112871605 112871670 -36645367 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1446 287 295 137 0 chr6 112871682 112871777 -36645260 - RSINE1 SINE B4 -55 110 3 6 1446 941 248 35 0 chr6 112873033 112873231 -36643806 + B3 SINE B2 1 205 -11 6 1446 237 33 0 0 chr6 112873283 112873313 -36643724 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1446 1012 242 74 84 chr6 112873830 112874128 -36642909 - MER21B LTR ERV1 -568 295 1 6 1446 649 300 65 39 chr6 112874642 112874951 -36642086 - MER102b DNA MER1_type -9 332 16 6 1446 235 339 42 58 chr6 112875243 112875434 -36641603 - L3 LINE CR1 -16 4473 4286 6 1446 513 298 27 55 chr6 112875437 112875657 -36641380 - L3 LINE CR1 -565 3924 3711 6 1446 205 349 197 0 chr6 112875781 112875913 -36641124 + L4 LINE RTE 1279 1436 -593 6 1446 194 323 46 0 chr6 112876223 112876288 -36640749 + L4 LINE RTE 1432 1499 -530 6 1446 368 363 67 5 chr6 112876313 112876507 -36640530 - MIRb SINE MIR -31 237 32 6 1446 906 258 82 7 chr6 112876610 112876880 -36640157 + B4A SINE B4 1 290 -2 6 1446 543 255 238 10 chr6 112877480 112877789 -36639248 + MTEb LTR MaLR 1 379 0 6 1446 1455 146 5 0 chr6 112878019 112878239 -36638798 - URR1B DNA MER1_type 0 225 5 6 1446 291 333 121 0 chr6 112878729 112878828 -36638209 - MIRb SINE MIR -132 136 26 6 1446 490 272 156 4 chr6 112878837 112879018 -36638019 - MIRb SINE MIR 0 262 61 6 1446 528 306 68 23 chr6 112879078 112879255 -36637782 + Tigger5 DNA MER2_type 47 231 -2175 6 1446 756 239 118 11 chr6 112879270 112879456 -36637581 + Tigger5 DNA MER2_type 2171 2376 -30 6 1446 546 188 51 0 chr6 112879619 112879736 -36637301 + B1_Mur3 SINE Alu 27 149 0 6 1446 337 274 88 62 chr6 112880520 112880633 -36636404 - L2c LINE L2 -14 3373 3258 6 1446 351 60 0 0 chr6 112880675 112880725 -36636312 + (A)n Simple_repeat Simple_repeat 1 50 0 6 1446 250 323 0 0 chr6 112881213 112881275 -36635762 + tRNA-Ala-GCY_ tRNA tRNA 1 62 -13 6 1446 293 191 127 0 chr6 112881653 112881716 -36635321 + ID4 SINE ID 2 72 -11 6 1446 324 0 0 0 chr6 112882623 112882659 -36634378 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1446 181 167 0 27 chr6 112883357 112883394 -36633643 + L2a LINE L2 3390 3425 -1 6 1446 857 116 0 0 chr6 112883760 112883881 -36633156 + B2_Mm2 SINE B2 37 157 -38 6 1446 249 33 0 0 chr6 112883882 112883912 -36633125 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1446 651 290 82 48 chr6 112883983 112884298 -36632739 - ORR1E LTR MaLR -33 326 1 6 1446 798 81 0 0 chr6 112884436 112884560 -36632477 + (TC)n Simple_repeat Simple_repeat 1 124 0 6 1446 836 186 258 19 chr6 112884781 112885038 -36631999 - MTD LTR MaLR -14 405 91 6 1446 198 0 0 0 chr6 112885143 112885165 -36631872 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1446 1676 110 4 0 chr6 112885180 112885416 -36631621 - L1_Mus1 LINE L1 0 6567 6331 6 1446 2944 41 0 3 chr6 112885416 112885762 -36631275 + L1Md_F2 LINE L1 5981 6325 -257 6 1446 279 312 49 1 chr6 112886186 112886300 -36630737 + L1M4 LINE L1 5696 5813 -361 6 1446 287 239 56 0 chr6 112886357 112886428 -36630609 + RSINE1 SINE B4 68 142 -23 6 1446 285 125 0 0 chr6 112886428 112886484 -36630553 + (CATA)n Simple_repeat Simple_repeat 4 59 0 6 1446 264 265 59 0 chr6 112887323 112887391 -36629646 - B1F SINE Alu -69 80 9 6 1446 407 301 37 15 chr6 112887863 112887998 -36629039 + MER20 DNA MER1_type 4 141 -78 6 1446 331 242 0 0 chr6 112888273 112888335 -36628702 + ID SINE ID 3 64 -160 6 1446 234 309 25 83 chr6 112888335 112888393 -36628644 + BC1_Mm scRNA scRNA 3 115 -37 6 1446 685 203 38 0 chr6 112888413 112888546 -36628491 + B3A SINE B2 15 152 -46 6 1446 312 102 0 0 chr6 112888548 112888597 -36628440 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1446 666 251 154 42 chr6 112890471 112890751 -36626286 + MLT1A0 LTR MaLR 10 355 -35 6 1446 278 320 139 73 chr6 112891207 112891480 -36625557 + MER102b DNA MER1_type 5 295 -46 6 1446 2523 86 9 0 chr6 112891807 112892131 -36624906 + ORR1A2 LTR MaLR 1 327 0 6 1446 205 398 56 26 chr6 112892302 112892534 -36624503 + L3 LINE CR1 2978 3216 -1273 6 1446 653 179 144 48 chr6 112893071 112893259 -36623778 + ID_B1 SINE B4 2 207 -17 6 1446 274 282 10 60 chr6 112893975 112894091 -36622946 + MIRc SINE MIR 79 191 -85 6 1446 375 159 0 0 chr6 112894147 112894216 -36622821 - ID4 SINE ID -12 71 3 6 1446 276 100 0 0 chr6 112894309 112894349 -36622688 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1446 201 250 36 0 chr6 112894665 112894721 -36622316 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1446 333 0 0 0 chr6 112894731 112894768 -36622269 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1446 188 34 0 33 chr6 112895916 112895946 -36621091 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 6 1446 451 239 4 4 chr6 112896809 112897039 -36619998 + (CA)n Simple_repeat Simple_repeat 1 230 0 6 1446 250 227 0 70 chr6 112897970 112898041 -36618996 + MIRb SINE MIR 194 259 -9 7 1446 277 244 144 0 chr6 112899055 112899145 -36617892 + MIRc SINE MIR 44 146 -122 7 1446 450 266 99 28 chr6 112899723 112899761 -36617276 - B2_Mm2 SINE B2 0 195 156 7 1446 486 83 0 0 chr6 112899761 112899833 -36617204 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1446 604 231 119 0 chr6 112899833 112899976 -36617061 - B3 SINE B2 -56 160 1 7 1446 819 152 203 48 chr6 112900002 112900189 -36616848 - B3 SINE B2 0 216 1 7 1446 211 239 39 78 chr6 112900312 112900389 -36616648 - MIR SINE MIR -115 147 74 7 1446 308 176 14 68 chr6 112900952 112901025 -36616012 + ID4_ SINE ID 1 69 -14 7 1446 235 304 40 45 chr6 112901036 112901212 -36615825 + Lx8 LINE L1 7299 7473 0 7 1446 865 236 23 28 chr6 112901316 112901530 -36615507 + B3 SINE B2 2 214 -2 7 1446 1654 156 52 7 chr6 112901608 112901931 -36615106 - ORR1B1 LTR MaLR -8 386 1 7 1446 1311 88 33 0 chr6 112902043 112902224 -36614813 - B2_Mm2 SINE B2 -8 187 1 7 1446 270 0 0 0 chr6 112902239 112902269 -36614768 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1446 1163 63 14 0 chr6 112902269 112902412 -36614625 - B1_Mus1 SINE Alu -2 146 2 7 1446 343 193 24 12 chr6 112902413 112902497 -36614540 + L1MB5 LINE L1 5849 5933 -241 7 1446 959 228 14 23 chr6 112902613 112902829 -36614208 - B3 SINE B2 0 216 3 7 1446 2219 97 19 0 chr6 112902905 112903225 -36613812 + IAPEY2_LTR LTR ERVK 32 357 0 7 1446 462 289 204 21 chr6 112903337 112903528 -36613509 - MLT1K LTR MaLR -116 479 254 7 1446 219 139 0 0 chr6 112903956 112903992 -36613045 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1446 856 250 32 18 chr6 112904022 112904242 -36612795 + ID_B1 SINE B4 1 223 -1 7 1446 405 163 0 0 chr6 112904245 112904337 -36612700 + GA-rich Low_complexity Low_complexity 1 92 0 7 1446 439 196 224 0 chr6 112904344 112904451 -36612586 + B1_Mur2 SINE Alu 19 149 0 7 1446 212 300 0 39 chr6 112904453 112904466 -36612571 + polypurine Low_complexity Low_complexity 3 15 0 7 1446 612 40 0 0 chr6 112904466 112904541 -36612496 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 7 1446 212 300 0 39 chr6 112904541 112904631 -36612406 + GA-rich Low_complexity Low_complexity 16 102 0 7 1446 769 227 82 7 chr6 112905252 112905433 -36611604 + B3 SINE B2 3 187 -8 7 1446 30 0 0 0 chr6 112905433 112905463 -36611574 + AT_rich Low_complexity Low_complexity 1 30 0 7 1446 319 301 57 69 chr6 112905587 112905762 -36611275 + MLT1B LTR MaLR 1 173 -201 7 1446 453 36 0 0 chr6 112905774 112905829 -36611208 + (TC)n Simple_repeat Simple_repeat 2 56 0 7 1446 350 275 62 67 chr6 112905831 112906002 -36611035 + MLT1B LTR MaLR 162 356 -34 7 1446 182 400 204 12 chr6 112906148 112906310 -36610727 - L2b LINE L2 0 3375 3183 7 1446 497 273 21 35 chr6 112906333 112906401 -36610636 + ID SINE ID 16 81 -143 7 1446 305 265 146 10 chr6 112906401 112906504 -36610533 + PB1D10 SINE Alu 1 117 0 7 1446 858 104 73 22 chr6 112906516 112906653 -36610384 + B1_Mur1 SINE Alu 5 148 -1 7 1446 267 286 210 29 chr6 112906854 112907092 -36609945 + L2 LINE L2 2690 2970 -449 7 1446 237 182 0 0 chr6 112907108 112907163 -36609874 + (CATA)n Simple_repeat Simple_repeat 2 56 0 7 1446 360 368 46 0 chr6 112907398 112907572 -36609465 + MER3 DNA MER1_type 7 188 -21 7 1446 819 107 33 0 chr6 112907584 112907705 -36609332 + ORR1B2 LTR MaLR 2 126 -241 7 1446 295 29 0 0 chr6 112907711 112907746 -36609291 + ORR1B2 LTR MaLR 344 378 0 7 1446 640 35 11 11 chr6 112908195 112908283 -36608754 + (TCC)n Simple_repeat Simple_repeat 1 88 0 7 1446 228 217 127 115 chr6 112909240 112909424 -36607613 - MIRb SINE MIR -9 259 65 7 1446 220 303 276 0 chr6 112909657 112909802 -36607235 - MER5A DNA MER1_type -3 186 2 7 1446 226 312 0 0 chr6 112909878 112909935 -36607102 + B4A SINE B4 2 58 -234 7 1446 244 297 0 0 chr6 112909935 112909992 -36607045 + B4A SINE B4 2 58 -234 7 1446 244 297 0 0 chr6 112909992 112910049 -36606988 + B4A SINE B4 2 58 -234 7 1446 528 314 16 70 chr6 112910049 112910234 -36606803 + B4A SINE B4 2 176 -116 7 1446 306 309 25 0 chr6 112910256 112910337 -36606700 + RSINE1 SINE B4 83 165 0 7 1446 5681 196 66 52 chr6 112910411 112911659 -36605378 - Lx9 LINE L1 -7 7637 6369 7 1446 2185 242 129 64 chr6 112911659 112912467 -36604570 + RMER13A LTR ERVK 1 860 0 7 1446 5681 196 66 52 chr6 112912467 112912563 -36604474 - Lx9 LINE L1 -1276 6368 6274 7 1446 873 201 0 0 chr6 112912603 112912752 -36604285 + B1_Mur3 SINE Alu 1 149 0 7 1446 655 89 0 0 chr6 112912788 112912878 -36604159 + B2_Mm2 SINE B2 4 93 -102 7 1446 1819 197 82 20 chr6 112912890 112913311 -36603726 + RLTR26 LTR ERVK 6 467 -175 7 1446 237 65 0 0 chr6 112913311 112913342 -36603695 + (CAGCT)n Simple_repeat Simple_repeat 3 33 0 7 1446 1819 242 116 24 chr6 112913342 112913364 -36603673 + RLTR26 LTR ERVK 468 517 -125 7 1446 453 103 0 0 chr6 112913364 112913432 -36603605 + (CAG)n Simple_repeat Simple_repeat 2 69 0 7 1446 1819 242 116 24 chr6 112913432 112913546 -36603491 + RLTR26 LTR ERVK 518 640 -2 7 1446 439 202 138 9 chr6 112913546 112913625 -36603412 + B2_Mm2 SINE B2 87 179 -14 7 1446 307 308 103 34 chr6 112913685 112913860 -36603177 + L1ME2 LINE L1 5875 6061 -103 7 1446 910 159 129 21 chr6 112914833 112915019 -36602018 + B3 SINE B2 1 206 -10 7 1446 589 316 47 0 chr6 112915036 112915229 -36601808 + U3 snRNA snRNA 1 202 -15 7 1446 540 155 0 0 chr6 112915229 112915284 -36601753 + polypurine Low_complexity Low_complexity 3 57 0 7 1446 1536 22 0 0 chr6 112915284 112915464 -36601573 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 7 1446 540 155 0 0 chr6 112915464 112915505 -36601532 + polypurine Low_complexity Low_complexity 58 98 0 7 1446 1264 145 39 5 chr6 112915667 112915875 -36601162 - B3 SINE B2 0 216 2 7 1446 300 282 59 68 chr6 112915875 112915993 -36601044 + L1MD LINE L1 4092 4208 -1938 7 1446 512 242 97 30 chr6 112916040 112916389 -36600648 + L1_Mm LINE L1 4192 4572 -1571 7 1446 412 288 75 67 chr6 112916378 112916724 -36600313 + L1_Mm LINE L1 4973 5321 -819 7 1446 447 279 123 0 chr6 112916726 112916848 -36600189 + RSINE1 SINE B4 3 139 -26 7 1446 198 118 0 0 chr6 112916850 112916884 -36600153 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1446 282 262 48 12 chr6 112916884 112917017 -36600020 + L1_Mur3 LINE L1 5297 5430 -1014 7 1446 721 252 48 19 chr6 112917023 112917233 -36599804 + B3 SINE B2 1 216 0 7 1446 719 297 63 44 chr6 112917265 112917582 -36599455 + L1_Rod LINE L1 5376 5698 -149 7 1446 279 274 128 64 chr6 112917640 112917765 -36599272 + RMER12 LTR ERVK 710 842 -480 7 1446 690 222 8 7 chr6 112918069 112918214 -36598823 - B1_Mur1 SINE Alu -7 142 3 7 1446 306 0 0 0 chr6 112918227 112918261 -36598776 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1446 923 199 40 130 chr6 112918278 112918555 -36598482 + B4 SINE B4 3 254 -38 7 1446 1127 165 32 5 chr6 112918878 112919067 -36597970 + MTD LTR MaLR 226 419 0 7 1446 189 0 0 0 chr6 112919259 112919280 -36597757 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1446 1264 27 0 0 chr6 112919280 112919426 -36597611 - B1_Mm SINE Alu 0 147 2 7 1446 262 242 165 38 chr6 112920078 112920211 -36596826 + MLT1A0 LTR MaLR 9 158 -207 7 1446 1372 192 234 0 chr6 112920250 112920631 -36596406 + Lx8 LINE L1 6837 7306 -167 7 1446 503 90 13 13 chr6 112920641 112920720 -36596317 + MTC LTR MaLR 343 421 0 7 1446 317 172 21 21 chr6 112920818 112920913 -36596124 + (TA)n Simple_repeat Simple_repeat 2 96 0 7 1446 205 319 219 14 chr6 112921249 112921395 -36595642 + MIRb SINE MIR 13 188 -80 7 1446 2588 145 55 61 chr6 112921648 112922175 -36594862 - RLTR28 LTR ERVL 0 524 1 7 1446 226 314 90 33 chr6 112922474 112922596 -36594441 - MLT1K LTR MaLR -444 151 23 7 1446 405 0 0 0 chr6 112923713 112923758 -36593279 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1446 410 176 12 0 chr6 112923760 112923845 -36593192 + GA-rich Low_complexity Low_complexity 2 87 0 7 1446 248 258 108 49 chr6 112924282 112924384 -36592653 - MIR3 SINE MIR -16 192 85 7 1446 436 314 25 25 chr6 112924455 112924612 -36592425 + RSINE1 SINE B4 9 165 0 7 1446 659 315 127 39 chr6 112924656 112924683 -36592354 - Charlie1a DNA MER1_type -503 952 924 7 1446 297 263 26 0 chr6 112924683 112924759 -36592278 - ID4_ SINE ID -4 79 2 7 1446 659 315 127 39 chr6 112924759 112925164 -36591873 - Charlie1a DNA MER1_type -532 923 482 7 1446 1092 183 35 0 chr6 112925177 112925379 -36591658 + B3 SINE B2 1 209 -7 7 1446 704 211 0 0 chr6 112925500 112925623 -36591414 + RSINE1 SINE B4 3 125 -40 7 1446 348 24 0 0 chr6 112925623 112925664 -36591373 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1446 320 276 96 59 chr6 112925683 112925818 -36591219 - LTR37A LTR ERV1 -157 269 130 7 1446 789 254 52 14 chr6 112925811 112926023 -36591014 - ID_B1 SINE B4 -2 222 3 7 1446 21 0 0 0 chr6 112926152 112926173 -36590864 + AT_rich Low_complexity Low_complexity 1 21 0 7 1446 36 40 0 0 chr6 112926460 112926510 -36590527 + AT_rich Low_complexity Low_complexity 1 50 0 7 1446 543 259 101 21 chr6 112926515 112926557 -36590480 - Charlie1a DNA MER1_type -996 459 403 7 1446 210 71 0 0 chr6 112926557 112926585 -36590452 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1446 198 0 0 0 chr6 112926585 112926606 -36590431 + (GA)n Simple_repeat Simple_repeat 2 23 0 7 1446 543 259 101 21 chr6 112926606 112926751 -36590286 - Charlie1a DNA MER1_type -1053 402 257 7 1446 663 258 66 20 chr6 112926810 112927008 -36590029 + MER2 DNA MER2_type 9 215 -130 7 1446 684 199 1 15 chr6 112927183 112927314 -36589723 + B3 SINE B2 19 143 -73 7 1446 3103 117 36 11 chr6 112927353 112927821 -36589216 + RLTR19 LTR ERVK 20 499 0 7 1446 615 184 37 187 chr6 112927850 112928064 -36588973 + RCHARR1 DNA MER1_type 777 958 -16 7 1446 375 257 131 0 chr6 112928067 112928242 -36588795 + L1MA5 LINE L1 5413 5610 -690 8 1446 990 243 68 26 chr6 112928361 112928669 -36588368 + L1MA5 LINE L1 5649 5969 -331 8 1446 244 242 32 0 chr6 112928684 112928746 -36588291 + ID4_ SINE ID 10 73 -10 8 1446 249 314 0 19 chr6 112928801 112928905 -36588132 + L1MA5 LINE L1 6004 6105 -195 8 1446 271 328 107 67 chr6 112928967 112929342 -36587695 + MER34 LTR ERV1 152 571 0 8 1446 396 0 0 0 chr6 112929360 112929404 -36587633 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1446 748 151 190 82 chr6 112929472 112929667 -36587370 + B3 SINE B2 1 216 0 8 1446 480 238 115 0 chr6 112929707 112929829 -36587208 + ID_B1 SINE B4 82 217 -7 8 1446 347 0 23 0 chr6 112929830 112929873 -36587164 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 8 1446 23 0 0 0 chr6 112929877 112929900 -36587137 + AT_rich Low_complexity Low_complexity 1 23 0 8 1446 888 153 73 0 chr6 112929902 112930039 -36586998 + B1_Mur4 SINE Alu 3 149 -1 8 1446 1218 89 18 0 chr6 112930042 112930210 -36586827 + B2_Mm1t SINE B2 1 171 -22 8 1446 315 0 0 0 chr6 112930302 112930337 -36586700 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 8 1446 630 224 119 0 chr6 112930538 112930681 -36586356 + B3A SINE B2 1 160 -38 8 1446 229 314 101 35 chr6 112930866 112931064 -36585973 - L1M4b LINE L1 -5232 2102 1892 8 1446 312 91 0 0 chr6 112931839 112931883 -36585154 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 8 1446 1002 105 28 0 chr6 112931898 112932041 -36584996 - B1_Mus1 SINE Alu -1 147 1 8 1446 676 267 111 35 chr6 112932099 112932335 -36584702 - B4A SINE B4 -39 253 1 8 1446 532 350 22 11 chr6 112932797 112933066 -36583971 - B4A SINE B4 -18 274 3 8 1446 282 271 0 0 chr6 112933398 112933505 -36583532 + (TG)n Simple_repeat Simple_repeat 1 107 0 8 1446 424 336 0 7 chr6 112934101 112934245 -36582792 + (CA)n Simple_repeat Simple_repeat 1 143 0 8 1446 1112 95 0 6 chr6 112934349 112934518 -36582519 + (TG)n Simple_repeat Simple_repeat 1 168 0 8 1446 2481 80 6 9 chr6 112934546 112934874 -36582163 + ORR1A2 LTR MaLR 1 327 0 8 1446 388 262 106 53 chr6 112934912 112935025 -36582012 - RSINE1 SINE B4 -43 122 4 8 1446 290 318 59 59 chr6 112935055 112935242 -36581795 - MER113 DNA MER1_type -121 400 214 8 1446 520 283 87 12 chr6 112935459 112935620 -36581417 - MER5A DNA MER1_type -16 173 1 8 1446 1103 271 44 65 chr6 112935743 112936129 -36580908 - Charlie19a DNA Charlie 0 386 9 8 1446 3121 68 2 5 chr6 112936659 112937056 -36579981 + MTA_Mm LTR MaLR 1 396 0 8 1446 775 195 25 43 chr6 112937072 112937233 -36579804 + ORR1D2 LTR MaLR 10 167 -203 8 1446 994 258 128 43 chr6 112937233 112937585 -36579452 - RMER12 LTR ERVK 0 1322 941 8 1446 269 51 26 0 chr6 112937586 112937625 -36579412 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 8 1446 4239 142 30 35 chr6 112937638 112937856 -36579181 - RMER12 LTR ERVK -572 750 521 8 1446 4947 126 86 61 chr6 112937856 112938791 -36578246 + RMER17B LTR ERVK 1 958 0 8 1446 4239 142 30 35 chr6 112938791 112938995 -36578042 - RMER12 LTR ERVK -802 520 310 8 1446 1179 125 23 6 chr6 112938995 112939172 -36577865 + B2_Mm2 SINE B2 2 181 -14 8 1446 4239 142 30 35 chr6 112939172 112939501 -36577536 - RMER12 LTR ERVK -1013 309 2 8 1446 730 274 33 47 chr6 112939501 112939712 -36577325 + ORR1D2 LTR MaLR 162 369 -1 8 1446 761 215 21 0 chr6 112940583 112940727 -36576310 + B1_Mus2 SINE Alu 1 147 0 8 1446 235 179 0 0 chr6 112940907 112940946 -36576091 + ID4_ SINE ID 2 40 -43 8 1446 198 182 30 15 chr6 112940952 112941019 -36576018 + GA-rich Low_complexity Low_complexity 3 70 0 8 1446 401 308 76 0 chr6 112941171 112941382 -36575655 - L1MB3 LINE L1 -174 6009 5783 8 1446 281 345 23 17 chr6 112941596 112941773 -36575264 + MT2A LTR ERVL 1 178 -355 8 1446 1463 249 29 20 chr6 112941628 112941969 -36575068 + MTEa LTR MaLR 34 377 -2 8 1446 28 0 0 0 chr6 112942026 112942054 -36574983 + AT_rich Low_complexity Low_complexity 1 28 0 8 1446 22 56 0 0 chr6 112942864 112942900 -36574137 + AT_rich Low_complexity Low_complexity 1 36 0 8 1446 232 282 26 0 chr6 112942940 112943018 -36574019 + HAL1 LINE L1 1262 1341 -1166 8 1446 3110 9 18 0 chr6 112943030 112943370 -36573667 + ORR1A0 LTR MaLR 1 346 0 8 1446 1520 274 57 72 chr6 112943809 112944091 -36572946 + Lx9 LINE L1 6943 7240 -404 8 1446 856 147 22 0 chr6 112944091 112944227 -36572810 + B1_Mur3 SINE Alu 1 139 -10 8 1446 198 0 0 0 chr6 112944227 112944249 -36572788 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1446 1520 274 57 72 chr6 112944249 112944524 -36572513 + Lx9 LINE L1 7241 7492 -152 8 1446 277 203 95 0 chr6 112944608 112944682 -36572355 + HAL1 LINE L1 2021 2101 -406 8 1446 2226 55 34 0 chr6 112944824 112945116 -36571921 - L1_Mus1 LINE L1 0 6567 6266 8 1446 427 295 93 7 chr6 112945374 112945514 -36571523 + RSINE1 SINE B4 2 153 -12 8 1446 216 0 0 0 chr6 112945529 112945553 -36571484 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1446 324 0 0 0 chr6 112945574 112945610 -36571427 + (TCC)n Simple_repeat Simple_repeat 2 37 0 8 1446 25 75 0 0 chr6 112945706 112945759 -36571278 + AT_rich Low_complexity Low_complexity 1 53 0 8 1446 908 226 20 5 chr6 112945827 112946027 -36571010 - B3 SINE B2 -13 203 1 8 1446 431 243 45 36 chr6 112946052 112946163 -36570874 - PB1D10 SINE Alu -5 112 1 8 1446 459 0 0 0 chr6 112946223 112946274 -36570763 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1446 1477 177 162 6 chr6 112946404 112946750 -36570287 + MTD LTR MaLR 6 405 -14 8 1446 261 296 51 43 chr6 112946895 112947033 -36570004 + MLT1H1 LTR MaLR 37 175 -380 8 1446 2232 196 14 2 chr6 112947792 112948206 -36568831 + MTC LTR MaLR 1 419 -2 8 1446 1919 175 18 25 chr6 112948206 112948605 -36568432 + MTC-int LTR MaLR 3 398 -860 8 1446 230 32 0 0 chr6 112948621 112948652 -36568385 + MTD LTR MaLR 389 419 0 8 1446 676 275 11 11 chr6 112948713 112948893 -36568144 - B3A SINE B2 -15 183 4 8 1446 294 322 78 13 chr6 112948980 112949134 -36567903 + MER20 DNA MER1_type 16 179 -40 8 1446 180 0 0 0 chr6 112949491 112949511 -36567526 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1446 423 241 51 62 chr6 112949642 112949819 -36567218 + B3A SINE B2 23 197 -1 8 1446 600 207 17 0 chr6 112949832 112949948 -36567089 + B1_Mur1 SINE Alu 1 118 -31 8 1446 414 0 0 0 chr6 112949965 112950011 -36567026 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 8 1446 616 200 81 7 chr6 112951415 112951551 -36565486 - B1_Mur2 SINE Alu -2 147 2 8 1446 219 69 0 0 chr6 112951551 112951580 -36565457 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 1446 740 118 101 0 chr6 112951583 112951702 -36565335 - B1_Mur4 SINE Alu -6 144 14 8 1446 305 254 26 92 chr6 112952099 112952251 -36564786 + ORR1E LTR MaLR 8 149 -210 8 1446 1540 196 97 3 chr6 112953196 112953569 -36563468 + MTD LTR MaLR 12 419 0 8 1446 862 151 14 4 chr6 112953723 112953896 -36563141 - URR1B DNA MER1_type 0 225 56 8 1446 674 258 0 40 chr6 112954557 112954755 -36562282 + B3A SINE B2 3 192 -6 8 1446 21 0 0 0 chr6 112955162 112955183 -36561854 + AT_rich Low_complexity Low_complexity 1 21 0 8 1446 522 204 0 0 chr6 112955269 112955372 -36561665 - B3 SINE B2 -5 211 109 8 1446 565 319 42 14 chr6 112955460 112955676 -36561361 + MLT1H2 LTR MaLR 51 272 -217 8 1446 422 204 5 111 chr6 112955854 112956052 -36560985 + (CACCT)n Simple_repeat Simple_repeat 3 179 0 8 1446 1136 212 14 49 chr6 112956807 112957095 -36559942 + RLTR18 LTR ERVK 5 282 -334 8 1446 1289 235 38 16 chr6 112957126 112957486 -36559551 + RLTR18B LTR ERVK 168 512 0 8 1446 530 292 77 73 chr6 112957533 112957681 -36559356 + ORR1E LTR MaLR 19 182 -177 8 1446 261 0 0 0 chr6 112957681 112957710 -36559327 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1446 530 292 77 73 chr6 112957710 112957901 -36559136 + ORR1E LTR MaLR 183 359 0 8 1446 437 266 41 20 chr6 112958075 112958221 -36558816 + B1_Mur3 SINE Alu 1 149 0 8 1446 189 0 0 0 chr6 112958730 112958751 -36558286 + (GAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1446 698 132 91 23 chr6 112958893 112959025 -36558012 + B1_Mur3 SINE Alu 8 148 -1 8 1446 936 204 83 19 chr6 112959282 112959487 -36557550 - ID_B1 SINE B4 -4 220 3 8 1446 268 242 9 128 chr6 112959502 112959611 -36557426 - L2a LINE L2 -27 3399 3304 8 1446 850 43 8 0 chr6 112959739 112959856 -36557181 - B1_Mus1 SINE Alu -1 147 30 8 1446 1029 168 27 46 chr6 112959863 112960082 -36556955 - URR1A DNA MER1_type 0 226 12 8 1446 318 292 37 28 chr6 112960307 112960416 -36556621 - MLT1A0 LTR MaLR 0 365 256 8 1446 1022 198 25 5 chr6 112960592 112960790 -36556247 - B3 SINE B2 -6 210 9 8 1446 184 0 0 88 chr6 112961291 112961325 -36555712 + (TAA)n Simple_repeat Simple_repeat 3 33 0 8 1446 570 199 92 0 chr6 112961327 112961458 -36555579 - RSINE1 SINE B4 -20 145 3 8 1446 487 326 51 77 chr6 112961506 112961898 -36555139 - Lx8 LINE L1 -8 7465 7084 8 1446 216 0 0 0 chr6 112962444 112962468 -36554569 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1446 206 186 0 23 chr6 112963256 112963300 -36553737 - MER5A DNA MER1_type -86 103 61 8 1446 524 306 19 0 chr6 112964448 112964608 -36552429 - RSINE1 SINE B4 0 165 3 8 1446 270 306 30 75 chr6 112964721 112964855 -36552182 - MamGypLTR1c LTR Gypsy -601 202 75 8 1446 1382 102 16 0 chr6 112965037 112965224 -36551813 + B2_Mm2 SINE B2 3 192 -3 8 1446 1158 68 0 7 chr6 112965319 112965466 -36551571 - B1_Mus1 SINE Alu 0 148 3 8 1446 880 225 96 0 chr6 112965679 112965866 -36551171 - B3 SINE B2 -11 205 1 8 1446 258 250 0 59 chr6 112965897 112965965 -36551072 + ID4_ SINE ID 2 65 -18 8 1446 480 235 0 0 chr6 112965965 112966067 -36550970 + B1F SINE Alu 27 128 -21 8 1446 216 333 23 47 chr6 112966073 112966202 -36550835 - MIRb SINE MIR -12 256 131 8 1446 207 0 0 0 chr6 112966241 112966264 -36550773 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 8 1446 638 206 23 0 chr6 112966552 112966683 -36550354 - B3 SINE B2 -1 215 82 8 1446 256 282 90 0 chr6 112966699 112966777 -36550260 + MLT1H LTR MaLR 79 163 -386 9 1446 606 237 0 30 chr6 112968675 112968810 -36548227 - RSINE1 SINE B4 -32 133 3 9 1446 392 156 52 0 chr6 112969019 112969096 -36547941 + ID4 SINE ID 1 81 -2 9 1446 213 94 0 0 chr6 112969758 112969790 -36547247 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1446 251 176 44 0 chr6 112969790 112969881 -36547156 + (TA)n Simple_repeat Simple_repeat 1 95 0 9 1446 420 235 39 0 chr6 112969912 112970014 -36547023 + RSINE1 SINE B4 25 130 -35 9 1446 264 208 64 18 chr6 112970014 112970185 -36546852 + (TA)n Simple_repeat Simple_repeat 1 179 0 9 1446 235 256 47 16 chr6 112970106 112970233 -36546804 + (TATATG)n Simple_repeat Simple_repeat 1 131 0 9 1446 376 221 248 16 chr6 112970265 112970394 -36546643 - RSINE1 SINE B4 -4 161 3 9 1446 199 282 66 28 chr6 112970542 112970648 -36546389 + MIRc SINE MIR 85 194 -74 9 1446 226 203 312 0 chr6 112970668 112970732 -36546305 + B3 SINE B2 1 84 -132 9 1446 1108 105 122 0 chr6 112970795 112970967 -36546070 - B2_Mm1t SINE B2 0 193 1 9 1446 554 264 7 21 chr6 112970985 112971128 -36545909 + B3 SINE B2 76 216 0 9 1446 430 284 24 9 chr6 112971774 112971938 -36545099 + B3A SINE B2 50 215 -1 9 1446 275 213 33 15 chr6 112972382 112972455 -36544582 - MLT1H LTR MaLR -2 547 414 9 1446 3247 136 4 44 chr6 112972455 112973001 -36544036 + RLTR28 LTR ERVL 1 524 0 9 1446 252 274 99 45 chr6 112973001 112973040 -36543997 - MLT1H LTR MaLR -76 413 369 9 1446 868 250 5 0 chr6 112973138 112973334 -36543703 - ID_B1 SINE B4 -26 198 2 9 1446 1701 16 11 0 chr6 112973361 112973551 -36543486 - B2_Mm1a SINE B2 0 193 2 9 1446 215 239 0 0 chr6 112973599 112973645 -36543392 + RSINE1 SINE B4 11 56 -109 9 1446 456 202 104 9 chr6 112973752 112973867 -36543170 + MER5A DNA MER1_type 1 126 -63 9 1446 231 188 141 0 chr6 112974175 112974239 -36542798 - ID4 SINE ID -8 75 3 9 1446 370 259 137 29 chr6 112974433 112974572 -36542465 + RSINE1 SINE B4 3 156 -9 9 1446 222 62 0 0 chr6 112974573 112974605 -36542432 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1446 183 80 0 0 chr6 112974679 112974704 -36542333 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1446 485 225 101 7 chr6 112974760 112974899 -36542138 - MLT2B4 LTR ERVL -404 152 1 9 1446 229 256 51 0 chr6 112975106 112975184 -36541853 - Charlie14a DNA MER1_type -1081 83 2 9 1446 315 229 29 0 chr6 112975522 112975592 -36541445 + ID4_ SINE ID 3 74 -9 9 1446 229 286 0 81 chr6 112976238 112976337 -36540700 + MIR SINE MIR 52 142 -120 9 1446 723 221 0 0 chr6 112976485 112976621 -36540416 + B1_Mur4 SINE Alu 5 140 -10 9 1446 195 42 0 0 chr6 112976621 112976645 -36540392 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1446 210 71 0 0 chr6 112976679 112976707 -36540330 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1446 1268 34 0 0 chr6 112976707 112976854 -36540183 - B1_Mm SINE Alu 0 147 1 9 1446 940 17 0 0 chr6 112976910 112977030 -36540007 + B1_Mm SINE Alu 28 147 0 9 1446 26 0 0 0 chr6 112977035 112977061 -36539976 + AT_rich Low_complexity Low_complexity 1 26 0 9 1446 376 273 91 19 chr6 112978460 112978595 -36538442 - MLT1B LTR MaLR -15 375 203 9 1446 764 88 9 0 chr6 112978595 112978709 -36538328 + (TAGA)n Simple_repeat Simple_repeat 2 116 0 9 1446 402 196 105 112 chr6 112978709 112978893 -36538144 - MLT1B LTR MaLR -172 202 1 9 1446 554 286 75 28 chr6 112979724 112979979 -36537058 + B4A SINE B4 4 270 -22 9 1446 1277 104 5 21 chr6 112980075 112980262 -36536775 + B2_Mm1a SINE B2 3 186 -7 9 1446 923 121 0 7 chr6 112980275 112980425 -36536612 + (GGAAA)n Simple_repeat Simple_repeat 4 152 0 9 1446 188 111 28 0 chr6 112981733 112981769 -36535268 + (TATG)n Simple_repeat Simple_repeat 2 38 0 9 1446 585 223 0 1 chr6 112982240 112982354 -36534683 + B3A SINE B2 57 170 -46 9 1446 2125 156 86 28 chr6 112982354 112982749 -36534288 + MTC LTR MaLR 4 421 0 9 1446 562 232 12 49 chr6 112982749 112982797 -36534240 + B3 SINE B2 171 213 -3 9 1446 1246 47 0 0 chr6 112982804 112982952 -36534085 + B1_Mus1 SINE Alu 1 148 0 9 1446 297 312 42 28 chr6 112982978 112983120 -36533917 + B1F SINE Alu 1 144 -5 9 1446 219 215 87 58 chr6 112983131 112983200 -36533837 + ID4 SINE ID 1 71 -12 9 1446 316 326 164 24 chr6 112983175 112983467 -36533570 + Charlie20a DNA Charlie 46 378 -429 9 1446 410 0 20 0 chr6 112983643 112983693 -36533344 + (TC)n Simple_repeat Simple_repeat 2 52 0 9 1446 405 0 0 0 chr6 112983693 112983737 -36533300 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1446 593 165 16 87 chr6 112983737 112983863 -36533174 - B1_Mur2 SINE Alu -32 117 1 9 1447 884 158 121 0 chr6 112984823 112984988 -36532049 - B3 SINE B2 -5 211 27 9 1447 406 46 31 0 chr6 112984988 112985053 -36531984 + (TTTTTG)n Simple_repeat Simple_repeat 4 70 0 9 1447 1229 41 0 0 chr6 112985053 112985200 -36531837 - B1_Mm SINE Alu 0 147 1 9 1447 230 175 0 0 chr6 112985200 112985240 -36531797 - B3 SINE B2 -176 40 1 9 1447 409 275 75 0 chr6 112985383 112985503 -36531534 + B1F SINE Alu 1 129 -20 9 1447 357 186 0 0 chr6 112985511 112985581 -36531456 + GA-rich Low_complexity Low_complexity 3 72 0 9 1447 216 312 143 0 chr6 112985706 112985818 -36531219 - L2a LINE L2 -5 3421 3294 9 1447 623 38 0 0 chr6 112985849 112985929 -36531108 - U6 snRNA snRNA -24 83 4 9 1447 1749 66 54 4 chr6 112985931 112986173 -36530864 + L1_Mus1 LINE L1 6311 6564 -3 9 1447 192 40 0 0 chr6 112986185 112986210 -36530827 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1447 1701 215 51 13 chr6 112986437 112986828 -36530209 - MTD LTR MaLR -13 406 1 9 1447 254 296 11 183 chr6 112986866 112987052 -36529985 - MLT1H LTR MaLR -272 277 124 9 1447 210 312 116 41 chr6 112987337 112987484 -36529553 + MIR SINE MIR 1 158 -104 9 1447 512 266 100 11 chr6 112987604 112987794 -36529243 + MER2 DNA MER2_type 134 340 -5 9 1447 349 299 31 0 chr6 112988887 112988984 -36528053 + PB1D9 SINE Alu 1 100 -20 9 1447 230 254 16 16 chr6 112989394 112989458 -36527579 + RSINE1 SINE B4 11 74 -91 9 1447 918 101 0 0 chr6 112989512 112989661 -36527376 + (CCA)n Simple_repeat Simple_repeat 1 149 0 9 1447 301 257 34 5 chr6 112989682 112989777 -36527260 + B4 SINE B4 2 95 -70 9 1447 2717 75 143 139 chr6 112989778 112990288 -36526749 + RLTR1B LTR ERV1 1 512 0 9 1447 4273 126 53 11 chr6 112990353 112991075 -36525962 - RMER6A LTR ERVK -4 752 1 9 1447 511 271 19 32 chr6 112991220 112991376 -36525661 + RSINE1 SINE B4 11 164 -1 9 1447 246 360 42 24 chr6 112991728 112991896 -36525141 + L2a LINE L2 2574 2744 -675 9 1447 532 217 121 32 chr6 112991926 112992050 -36524987 - ID_B1 SINE B4 0 224 90 9 1447 420 343 73 17 chr6 112992133 112992311 -36524726 - B3A SINE B2 -10 188 1 9 1447 376 327 111 45 chr6 112992446 112992779 -36524258 + L2a LINE L2 3064 3418 -8 9 1447 355 273 118 65 chr6 112993137 112993290 -36523747 - RSINE1 SINE B4 0 165 5 9 1447 677 226 95 171 chr6 112993381 112993665 -36523372 - L1MB7 LINE L1 -23 6161 5908 9 1447 303 209 0 56 chr6 112993665 112993736 -36523301 - ID4 SINE ID -14 69 3 9 1447 677 226 95 171 chr6 112993736 112993830 -36523207 - L1MB7 LINE L1 -277 5907 5812 9 1447 263 239 41 27 chr6 112993830 112993903 -36523134 + ID4_ SINE ID 10 83 0 9 1447 479 279 150 26 chr6 112993958 112994337 -36522700 - L1M5 LINE L1 -427 5752 5327 9 1447 715 133 62 62 chr6 112994774 112994918 -36522119 - B1_Mus1 SINE Alu 0 148 5 9 1447 552 268 7 7 chr6 112994954 112995093 -36521944 - RSINE1 SINE B4 -25 140 2 9 1447 189 0 0 0 chr6 112995272 112995293 -36521744 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 9 1447 462 206 104 30 chr6 112995344 112995479 -36521558 - B3A SINE B2 -48 150 6 9 1447 584 216 71 13 chr6 112995560 112995715 -36521322 + RSINE1 SINE B4 2 165 0 9 1447 688 179 28 7 chr6 112995847 112995988 -36521049 + B1_Mur1 SINE Alu 1 144 -5 9 1447 477 184 479 7 chr6 112998087 112998229 -36518808 - B3 SINE B2 -7 209 1 9 1447 260 234 263 11 chr6 112998608 112998703 -36518334 - ID_B1 SINE B4 -10 214 96 9 1447 458 274 0 0 chr6 112999106 112999223 -36517814 + PB1D10 SINE Alu 1 117 0 9 1447 3300 41 15 0 chr6 112999597 112999987 -36517050 + MTA_Mm LTR MaLR 1 396 0 9 1447 227 273 38 38 chr6 113000742 113000822 -36516215 - ID4_ SINE ID 0 83 4 1 1447 741 186 0 14 chr6 113001053 113001200 -36515837 - B1_Mur3 SINE Alu 0 149 5 2 1447 243 188 83 0 chr6 113001467 113001515 -36515522 + B4A SINE B4 164 215 -77 3 1447 536 221 156 0 chr6 113001530 113001652 -36515385 - B1_Mus1 SINE Alu -2 146 6 4 1447 718 163 24 0 chr6 113001694 113001817 -36515220 + B1_Mur4 SINE Alu 8 133 -17 5 1447 1208 68 0 0 chr6 113001934 113002082 -36514955 + B1_Mus1 SINE Alu 1 148 0 6 1447 26 64 0 0 chr6 113002317 113002364 -36514673 + AT_rich Low_complexity Low_complexity 1 47 0 7 1447 475 198 9 94 chr6 113002558 113002664 -36514373 - B1_Mur2 SINE Alu -1 148 52 8 1447 492 329 12 35 chr6 113002661 113002834 -36514203 - B4A SINE B4 -123 169 1 9 1447 5786 100 11 4 chr6 113003423 113004253 -36512784 - Lx2 LINE L1 -3 6994 6159 1 1447 510 221 84 42 chr6 113004348 113004490 -36512547 - B1_Mur1 SINE Alu -1 148 1 1 1447 219 300 129 0 chr6 113004646 113004716 -36512321 - ID4_ SINE ID -3 80 2 1 1447 293 318 60 8 chr6 113004728 113004861 -36512176 - B1F1 SINE Alu -8 141 2 1 1447 694 170 102 15 chr6 113005104 113005241 -36511796 + B1_Mur3 SINE Alu 1 149 0 1 1447 785 247 113 4 chr6 113006152 113006408 -36510629 + B4A SINE B4 3 286 -6 1 1447 277 365 104 19 chr6 113006502 113006714 -36510323 + MIR SINE MIR 20 249 -13 1 1447 411 239 148 84 chr6 113006715 113006734 -36510303 + B4 SINE B4 63 162 -130 1 1447 694 160 79 8 chr6 113006734 113006860 -36510177 + B1_Mur2 SINE Alu 9 143 -6 1 1447 1603 31 0 35 chr6 113007055 113007255 -36509782 - B2_Mm1t SINE B2 0 193 1 1 1447 1146 88 0 0 chr6 113008030 113008177 -36508860 + B1_Mus2 SINE Alu 1 147 0 2 1447 252 86 0 0 chr6 113008177 113008212 -36508825 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1447 596 198 49 16 chr6 113008352 113008475 -36508562 + B1_Mur1 SINE Alu 3 129 -20 2 1447 949 146 14 0 chr6 113008487 113008631 -36508406 + B1_Mus1 SINE Alu 3 148 0 2 1447 313 321 162 15 chr6 113008771 113008907 -36508130 + L1ME3 LINE L1 5883 6038 -124 2 1447 315 303 210 16 chr6 113008958 113009082 -36507955 + RSINE1 SINE B4 16 163 -2 2 1447 1082 226 34 0 chr6 113009148 113009352 -36507685 + B3 SINE B2 3 213 -3 2 1447 394 237 31 31 chr6 113009407 113009503 -36507534 - B4 SINE B4 -195 97 2 2 1447 361 269 106 0 chr6 113009563 113009667 -36507370 + B1F2 SINE Alu 22 136 -13 2 1447 180 0 0 0 chr6 113009682 113009702 -36507335 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 1447 783 125 17 0 chr6 113009707 113009827 -36507210 - B1_Mur4 SINE Alu -2 148 27 3 1447 539 216 10 0 chr6 113010691 113010793 -36506244 + U6 snRNA snRNA 1 103 -4 3 1447 789 244 35 66 chr6 113010829 113011026 -36506011 + B3A SINE B2 4 194 -4 3 1447 486 254 71 77 chr6 113011045 113011241 -36505796 + B3A SINE B2 2 196 -2 3 1447 527 208 21 0 chr6 113011627 113011723 -36505314 + B4A SINE B4 106 203 -89 3 1447 765 182 40 40 chr6 113011749 113011898 -36505139 + B1_Mur2 SINE Alu 1 149 0 3 1447 687 272 51 11 chr6 113012112 113012287 -36504750 + B3 SINE B2 35 216 0 3 1447 252 217 0 16 chr6 113012826 113012890 -36504147 - PB1D10 SINE Alu -36 84 24 3 1447 254 310 14 0 chr6 113013516 113013587 -36503450 + ID2 SINE ID 12 83 0 3 1447 1197 41 0 7 chr6 113013608 113013755 -36503282 + B1_Mm SINE Alu 2 147 0 3 1447 403 178 0 27 chr6 113013775 113013850 -36503187 - PB1D9 SINE Alu 0 120 48 4 1447 567 171 9 43 chr6 113014000 113014116 -36502921 + PB1D9 SINE Alu 9 120 0 4 1447 311 240 11 1 chr6 113014173 113014261 -36502776 - PB1D10 SINE Alu 0 149 59 4 1447 29 0 0 0 chr6 113014785 113014814 -36502223 + AT_rich Low_complexity Low_complexity 1 29 0 4 1447 294 190 122 37 chr6 113015932 113016014 -36501023 + MT2B LTR ERVL 169 257 -344 4 1447 708 81 20 0 chr6 113015959 113016058 -36500979 + B1_Mus2 SINE Alu 46 146 -1 4 1447 387 257 89 57 chr6 113016211 113016368 -36500669 - RSINE1 SINE B4 0 165 4 4 1447 512 347 33 7 chr6 113016557 113016708 -36500329 - RSINE1 SINE B4 -6 159 5 4 1447 612 276 106 25 chr6 113017419 113017579 -36499458 - B3 SINE B2 -42 174 2 4 1447 292 305 62 21 chr6 113019250 113019347 -36497690 - B1_Mur3 SINE Alu -46 103 3 4 1447 266 299 116 16 chr6 113019362 113019491 -36497546 - B3A SINE B2 -20 178 37 5 1447 207 0 0 0 chr6 113020160 113020183 -36496854 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 5 1447 1096 252 200 35 chr6 113020296 113020900 -36496137 - Charlie1 DNA MER1_type -1274 1507 804 5 1447 190 304 162 12 chr6 113021396 113021569 -36495468 - L2c LINE L2 -64 3323 3125 5 1447 1256 34 0 0 chr6 113021958 113022105 -36494932 + B1_Mm SINE Alu 1 147 0 5 1447 391 305 225 52 chr6 113022970 113023219 -36493818 - B4 SINE B4 0 292 1 5 1447 421 245 186 0 chr6 113023276 113023378 -36493659 + B1_Mur1 SINE Alu 24 144 -5 5 1447 22 0 0 0 chr6 113023676 113023698 -36493339 + AT_rich Low_complexity Low_complexity 1 22 0 5 1447 747 150 0 83 chr6 113024011 113024156 -36492881 - B1_Mus1 SINE Alu -15 133 1 5 1447 310 272 140 0 chr6 113024418 113024532 -36492505 - MER3 DNA MER1_type -71 138 9 5 1447 1229 65 30 0 chr6 113024575 113024743 -36492294 - B2_Mm2 SINE B2 -22 173 1 6 1447 216 97 0 0 chr6 113027392 113027423 -36489614 + (CCG)n Simple_repeat Simple_repeat 1 31 0 6 1447 489 76 0 0 chr6 113031821 113031887 -36485150 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 6 1447 1223 41 7 0 chr6 113033044 113033189 -36483848 + B1_Mus2 SINE Alu 2 147 0 6 1447 218 29 59 0 chr6 113033189 113033223 -36483814 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 6 1447 845 287 93 4 chr6 113034040 113034288 -36482749 + B4 SINE B4 12 281 -11 6 1447 189 0 0 0 chr6 113036798 113036819 -36480218 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1447 856 139 87 19 chr6 113037016 113037177 -36479860 - URR1B DNA MER1_type -16 209 38 6 1447 409 232 146 34 chr6 113037019 113037197 -36479840 + CYRA11_Mm Unknown Y-chromosome 190 387 -230 6 1447 270 308 24 15 chr6 113037232 113037347 -36479690 + B3A SINE B2 102 216 0 6 1447 770 264 0 6 chr6 113037498 113037662 -36479375 - B3 SINE B2 -6 210 48 7 1447 1115 211 0 0 chr6 113038103 113038297 -36478740 + B3 SINE B2 1 194 -22 7 1447 2949 47 0 23 chr6 113038315 113038705 -36478332 - L1Md_F2 LINE L1 -2 6580 6200 7 1447 432 267 48 0 chr6 113039136 113039241 -36477796 + B3A SINE B2 5 114 -84 7 1447 1426 60 5 16 chr6 113039279 113039466 -36477571 + B2_Mm1t SINE B2 2 186 -7 7 1447 986 130 43 38 chr6 113039505 113039689 -36477348 - B2_Mm2 SINE B2 -9 186 2 7 1447 261 0 0 0 chr6 113039731 113039760 -36477277 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1447 974 129 0 0 chr6 113039760 113039899 -36477138 - B1_Mur4 SINE Alu -11 139 1 7 1447 391 127 56 0 chr6 113039933 113040004 -36477033 - Charlie1b DNA MER1_type -256 267 193 7 1447 324 265 49 70 chr6 113040123 113040265 -36476772 - L1MC5 LINE L1 -1010 6951 6813 7 1447 322 241 155 35 chr6 113040452 113040568 -36476469 - L1MC5 LINE L1 -1219 6742 6613 7 1447 550 160 132 0 chr6 113041523 113041629 -36475408 - PB1D9 SINE Alu 0 120 1 8 1447 22 35 0 0 chr6 113041869 113041898 -36475139 + AT_rich Low_complexity Low_complexity 1 29 0 8 1447 640 294 22 71 chr6 113042006 113042189 -36474848 - B3A SINE B2 -24 174 1 8 1447 711 85 244 17 chr6 113042198 113042317 -36474720 - B1_Mus1 SINE Alu -1 147 2 8 1447 204 245 124 29 chr6 113042353 113042458 -36474579 + MIR SINE MIR 146 260 -2 8 1447 247 323 12 4 chr6 113042709 113042797 -36474240 - B1_Mm SINE Alu -55 92 2 8 1447 226 345 32 43 chr6 113042847 113042941 -36474096 + RSINE1 SINE B4 24 116 -49 8 1447 1024 138 12 6 chr6 113042945 113043105 -36473932 + B2_Mm2 SINE B2 1 161 -34 8 1447 344 297 9 47 chr6 113043319 113043425 -36473612 + PB1D7 SINE Alu 19 120 0 8 1447 325 131 180 0 chr6 113043597 113043658 -36473379 - B1_Mur3 SINE Alu 0 149 78 8 1447 180 0 0 0 chr6 113045020 113045040 -36471997 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 9 1447 333 319 109 25 chr6 113045049 113045168 -36471869 - B1F2 SINE Alu -20 129 1 9 1447 381 192 198 48 chr6 113045578 113045704 -36471333 + B1_Mur1 SINE Alu 5 149 0 9 1447 628 299 19 19 chr6 113045725 113045885 -36471152 + ID_B1 SINE B4 2 161 -63 9 1447 328 233 0 0 chr6 113046200 113046260 -36470777 - ID4_ SINE ID -23 60 1 9 1447 307 258 165 38 chr6 113046312 113046445 -36470592 + B4A SINE B4 9 158 -134 9 1447 359 216 144 0 chr6 113047035 113047132 -36469905 - PB1D9 SINE Alu -8 112 2 9 1447 378 0 0 0 chr6 113047758 113047800 -36469237 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1447 932 114 14 0 chr6 113047818 113047958 -36469079 + B1_Mus1 SINE Alu 7 148 0 9 1447 570 54 0 0 chr6 113048062 113048136 -36468901 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 9 1447 1045 97 0 0 chr6 113048146 113048290 -36468747 - B1_Mus2 SINE Alu -2 145 2 1 1447 25 51 0 0 chr6 113048333 113048372 -36468665 + AT_rich Low_complexity Low_complexity 1 39 0 1 1447 726 282 35 30 chr6 113048548 113048749 -36468288 - ID_B1 SINE B4 -1 223 22 1 1447 316 264 93 19 chr6 113050744 113050852 -36466185 + PB1D10 SINE Alu 2 117 0 1 1447 231 296 14 27 chr6 113051249 113051322 -36465715 - L2a LINE L2 -6 3420 3349 1 1447 616 244 90 2 chr6 113051670 113051808 -36465229 + B3 SINE B2 1 139 -56 1 1447 365 191 126 35 chr6 113052032 113052119 -36464918 - PB1D10 SINE Alu -9 108 14 1 1447 662 177 13 60 chr6 113053110 113053260 -36463777 - B1_Mur4 SINE Alu -7 143 1 1 1447 269 270 44 22 chr6 113053605 113053696 -36463341 - L1MC1 LINE L1 -19 6314 6222 1 1447 894 238 37 26 chr6 113053838 113054028 -36463009 + B3 SINE B2 1 192 -24 1 1447 591 296 42 66 chr6 113054483 113054772 -36462265 + B4A SINE B4 1 282 -10 1 1447 200 59 29 0 chr6 113056490 113056524 -36460513 + (TTG)n Simple_repeat Simple_repeat 3 37 0 1 1447 216 0 0 0 chr6 113056540 113056564 -36460473 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1447 377 198 88 18 chr6 113057559 113057672 -36459365 - BC1_Mm scRNA scRNA -26 126 6 1 1447 22 35 0 0 chr6 113057682 113057711 -36459326 + AT_rich Low_complexity Low_complexity 1 29 0 1 1447 507 278 99 44 chr6 113058983 113059164 -36457873 + MIRb SINE MIR 20 210 -58 1 1447 248 308 107 33 chr6 113059257 113059378 -36457659 + AmnSINE1 SINE SINE 422 551 -24 1 1447 530 266 35 0 chr6 113063875 113063988 -36453049 + RSINE1 SINE B4 4 120 -45 1 1447 195 129 0 0 chr6 113064364 113064395 -36452642 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 1 1447 1164 68 0 7 chr6 113064401 113064550 -36452487 - B1_Mus1 SINE Alu 0 148 1 1 1447 234 292 185 0 chr6 113064627 113064757 -36452280 - MIRc SINE MIR -111 157 4 1 1447 22 0 0 0 chr6 113066378 113066400 -36450637 + AT_rich Low_complexity Low_complexity 1 22 0 1 1447 21 57 0 0 chr6 113066924 113066959 -36450078 + AT_rich Low_complexity Low_complexity 1 35 0 1 1447 328 261 144 0 chr6 113067004 113067115 -36449922 + B1_Mur1 SINE Alu 23 149 0 1 1447 390 220 88 44 chr6 113067759 113067873 -36449164 + PB1D9 SINE Alu 1 119 -1 1 1447 378 318 0 9 chr6 113067964 113068075 -36448962 + PB1D10 SINE Alu 2 111 -6 1 1447 189 121 0 0 chr6 113068265 113068298 -36448739 + (GAA)n Simple_repeat Simple_repeat 3 35 0 1 1447 216 267 22 0 chr6 113068584 113068629 -36448408 + ID4 SINE ID 22 67 -16 1 1447 498 286 58 124 chr6 113068670 113069033 -36448004 - ORR1E LTR MaLR -13 346 8 1 1447 30 0 0 0 chr6 113069243 113069273 -36447764 + AT_rich Low_complexity Low_complexity 1 30 0 1 1447 551 229 0 35 chr6 113070236 113070349 -36446688 - B1_Mur1 SINE Alu 0 149 41 1 1447 580 307 41 72 chr6 113070418 113070639 -36446398 - B3 SINE B2 0 216 3 1 1447 237 65 0 0 chr6 113071825 113071856 -36445181 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 1 1447 938 140 82 0 chr6 113073886 113074057 -36442980 - B2_Mm2 SINE B2 -10 185 1 1 1447 1016 110 21 0 chr6 113074074 113074219 -36442818 - B1_Mus1 SINE Alu 0 148 1 1 1447 577 217 57 16 chr6 113074323 113074445 -36442592 + B3A SINE B2 1 127 -71 1 1447 459 0 0 0 chr6 113074453 113074504 -36442533 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1 1447 474 344 31 0 chr6 113074781 113074909 -36442128 - B1_Mur1 SINE Alu -16 133 2 1 1447 368 285 107 40 chr6 113075167 113075317 -36441720 + ID_B1 SINE B4 3 162 -62 1 1447 648 238 144 11 chr6 113075490 113075664 -36441373 - B3 SINE B2 -10 206 10 1 1447 1226 90 50 11 chr6 113075892 113076072 -36440965 - B2_Mm2 SINE B2 -7 188 2 1 1447 224 262 34 45 chr6 113076394 113076482 -36440555 - MIRb SINE MIR -146 122 36 1 1447 21 0 0 0 chr6 113077003 113077024 -36440013 + AT_rich Low_complexity Low_complexity 1 21 0 1 1447 225 200 0 0 chr6 113077242 113077287 -36439750 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1447 399 299 114 21 chr6 113078066 113078206 -36438831 + ID_B1 SINE B4 64 216 -8 1 1447 275 300 0 62 chr6 113079248 113079312 -36437725 + B1F SINE Alu 19 78 -71 1 1447 186 133 0 0 chr6 113079639 113079669 -36437368 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1447 242 213 43 0 chr6 113080341 113080388 -36436649 + B1F SINE Alu 99 147 -2 1 1447 305 293 65 0 chr6 113080445 113080568 -36436469 + L1MD LINE L1 4183 4313 -1833 1 1447 279 221 179 0 chr6 113081118 113081213 -36435824 - PB1D10 SINE Alu -1 116 5 1 1447 59 38 0 0 chr6 113081453 113081533 -36435504 + AT_rich Low_complexity Low_complexity 1 80 0 1 1447 301 302 22 65 chr6 113081741 113081833 -36435204 - RSINE1 SINE B4 -75 90 3 1 1447 298 300 29 0 chr6 113081854 113081924 -36435113 + ID4 SINE ID 6 77 -6 1 1447 584 162 81 0 chr6 113082212 113082323 -36434714 + B1_Mur3 SINE Alu 21 140 -9 1 1447 404 303 118 55 chr6 113082347 113082602 -36434435 + B4A SINE B4 4 274 -18 1 1447 394 301 21 0 chr6 113083152 113083245 -36433792 + PB1D10 SINE Alu 12 106 -11 1 1447 311 214 70 14 chr6 113083479 113083550 -36433487 + RSINE1 SINE B4 2 76 -89 1 1447 267 274 0 31 chr6 113083758 113083822 -36433215 + ID4_ SINE ID 8 69 -14 1 1447 352 300 19 39 chr6 113083944 113084048 -36432989 + RSINE1 SINE B4 50 151 -14 1 1447 438 20 0 0 chr6 113084050 113084101 -36432936 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1447 1120 208 10 0 chr6 113084273 113084480 -36432557 - B3 SINE B2 -6 210 2 1 1447 537 154 248 0 chr6 113084506 113084623 -36432414 + B1_Mur4 SINE Alu 1 146 -4 1 1447 1207 94 58 0 chr6 113084645 113084816 -36432221 + B2_Mm2 SINE B2 1 181 -14 1 1447 545 282 235 18 chr6 113084939 113085156 -36431881 - B4A SINE B4 -3 289 26 1 1447 297 0 0 0 chr6 113085161 113085194 -36431843 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1447 307 292 205 34 chr6 113085342 113085365 -36431672 + ID_B1 SINE B4 81 217 -7 1 1447 386 269 43 11 chr6 113085365 113085459 -36431578 + B1F SINE Alu 46 142 -7 1 1447 369 267 0 95 chr6 113086507 113086623 -36430414 - PB1 SINE Alu 0 127 23 1 1447 328 239 56 14 chr6 113086692 113086764 -36430273 - RSINE1 SINE B4 -23 142 68 1 1447 609 211 24 0 chr6 113086833 113086956 -36430081 - B1F2 SINE Alu -1 148 23 1 1447 206 57 0 54 chr6 113087264 113087301 -36429736 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1447 670 191 84 0 chr6 113087650 113087781 -36429256 + B1_Mur4 SINE Alu 1 142 -8 1 1447 280 244 38 13 chr6 113089545 113089624 -36427413 + RSINE1 SINE B4 9 89 -76 1 1447 581 299 34 17 chr6 113089689 113089866 -36427171 + B3A SINE B2 1 180 -18 1 1447 985 182 44 11 chr6 113089899 113090082 -36426955 + B3 SINE B2 1 189 -27 1 1447 198 191 0 0 chr6 113090083 113090130 -36426907 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1 1447 22 0 0 0 chr6 113090143 113090165 -36426872 + AT_rich Low_complexity Low_complexity 1 22 0 1 1447 259 227 0 83 chr6 113090395 113090467 -36426570 + PB1 SINE Alu 60 125 -2 1 1447 846 102 17 0 chr6 113090584 113090702 -36426335 + PB1D9 SINE Alu 1 120 0 1 1447 807 269 19 14 chr6 113090741 113090952 -36426085 + B3 SINE B2 3 214 -2 1 1447 188 217 65 0 chr6 113093933 113093979 -36423058 + L2a LINE L2 3050 3098 -328 1 1447 539 285 27 20 chr6 113094221 113094368 -36422669 - RSINE1 SINE B4 0 165 18 1 1447 338 244 24 49 chr6 113094714 113094795 -36422242 + B1F SINE Alu 1 79 -70 1 1447 560 327 42 0 chr6 113094795 113094960 -36422077 + B3A SINE B2 1 172 -26 1 1447 242 274 161 21 chr6 113094981 113095122 -36421915 - MIRm SINE MIR -67 195 41 1 1447 444 293 100 0 chr6 113096101 113096241 -36420796 + B3A SINE B2 3 156 -42 1 1447 351 264 34 11 chr6 113096279 113096367 -36420670 + RSINE1 SINE B4 41 130 -35 1 1447 252 308 10 90 chr6 113096437 113096537 -36420500 + MT2B2 LTR ERVL 156 247 -337 1 1447 483 260 39 0 chr6 113096454 113096558 -36420479 + PB1D10 SINE Alu 9 116 -1 1 1447 256 317 9 28 chr6 113097246 113097353 -36419684 + B3A SINE B2 47 151 -47 1 1447 180 0 0 0 chr6 113097934 113097954 -36419083 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1447 489 297 60 77 chr6 113098005 113098173 -36418864 - RSINE1 SINE B4 0 165 1 1 1447 708 162 299 0 chr6 113098261 113098415 -36418622 + B3 SINE B2 1 200 -16 1 1447 306 0 0 0 chr6 113098415 113098449 -36418588 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 1 1447 1293 75 0 6 chr6 113098469 113098644 -36418393 + B2_Mm2 SINE B2 4 177 -18 1 1447 231 340 59 10 chr6 113098744 113098778 -36418259 - PB1D10 SINE Alu 0 117 12 1 1447 272 318 0 15 chr6 113098778 113098845 -36418192 - ID_B1 SINE B4 -66 158 93 1 1447 470 211 0 0 chr6 113098913 113099003 -36418034 - B4A SINE B4 -63 229 140 1 1447 1032 84 35 7 chr6 113099099 113099242 -36417795 + B1_Mus2 SINE Alu 1 147 0 1 1447 216 97 0 0 chr6 113099242 113099273 -36417764 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1447 1327 86 43 0 chr6 113100334 113100521 -36416516 - B2_Mm2 SINE B2 0 195 1 1 1447 546 292 41 14 chr6 113100610 113100756 -36416281 + RSINE1 SINE B4 2 151 -14 1 1447 1092 233 132 37 chr6 113104937 113105452 -36411585 + MT2B LTR ERVL 1 594 -7 2 1447 410 205 0 13 chr6 113106079 113106158 -36410879 + MTD LTR MaLR 46 123 -296 2 1447 2321 144 26 18 chr6 113106166 113106556 -36410481 + ORR1B1 LTR MaLR 2 394 0 2 1447 3784 193 158 27 chr6 113106572 113107808 -36409229 + ORR1B1-int LTR MaLR 31 1509 0 2 1447 2238 136 50 13 chr6 113107809 113108188 -36408849 + ORR1B1 LTR MaLR 2 394 0 2 1447 980 170 89 6 chr6 113108193 113108430 -36408607 + MTD LTR MaLR 156 421 0 2 1447 283 209 29 157 chr6 113108500 113108565 -36408472 + PB1D7 SINE Alu 31 93 -27 2 1447 1075 149 124 0 chr6 113108565 113108766 -36408271 + URR1A DNA MER1_type 1 226 0 2 1447 283 209 29 157 chr6 113108766 113108802 -36408235 + PB1D7 SINE Alu 94 119 -1 2 1447 706 251 19 12 chr6 113108851 113109012 -36408025 - RSINE1 SINE B4 -1 164 3 2 1447 320 236 16 6 chr6 113109152 113109233 -36407804 - ID4_ SINE ID -51 101 22 2 1447 236 235 101 14 chr6 113109348 113109417 -36407620 + B1F SINE Alu 67 141 -8 2 1447 368 316 52 89 chr6 113109749 113110020 -36407017 + L1MC5 LINE L1 6742 7002 -959 2 1447 706 251 51 42 chr6 113110043 113110223 -36406814 - B3A SINE B2 -1 215 28 2 1447 2084 180 93 48 chr6 113110223 113110782 -36406255 - RLTR31A_Mm LTR ERVK 0 584 1 2 1447 706 245 47 41 chr6 113110782 113110806 -36406231 - B3A SINE B2 -171 27 6 2 1447 872 209 94 0 chr6 113110999 113111190 -36405847 + B3 SINE B2 4 212 -4 2 1447 362 308 41 24 chr6 113111314 113111437 -36405600 + B1F2 SINE Alu 23 147 -2 2 1447 793 256 56 10 chr6 113111475 113111672 -36405365 + B3 SINE B2 5 210 -6 2 1447 181 295 114 13 chr6 113112040 113112119 -36404918 + L2a LINE L2 3340 3426 0 2 1447 297 0 0 0 chr6 113112430 113112463 -36404574 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1447 393 280 0 101 chr6 113112468 113112607 -36404430 - ID_B1 SINE B4 -14 210 86 2 1447 1474 122 13 13 chr6 113112749 113112973 -36404064 - URR1B DNA MER1_type -1 224 1 2 1447 345 161 36 0 chr6 113113199 113113255 -36403782 + B1_Mur4 SINE Alu 3 60 -90 2 1447 479 157 6 35 chr6 113113312 113113484 -36403553 + GA-rich Low_complexity Low_complexity 4 170 0 2 1447 201 0 122 0 chr6 113113481 113113530 -36403507 + (CAGG)n Simple_repeat Simple_repeat 2 56 0 2 1447 477 109 89 98 chr6 113113533 113113645 -36403392 + B1_Mur4 SINE Alu 40 150 0 2 1447 238 277 0 97 chr6 113113685 113113757 -36403280 + MER45B DNA Tip100 526 590 -450 2 1447 367 264 88 0 chr6 113114840 113114931 -36402106 + U6 snRNA snRNA 8 106 -1 2 1447 866 126 11 0 chr6 113114943 113115118 -36401919 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 2 180 673 273 0 0 chr6 113115130 113115262 -36401775 - RSINE1 SINE B4 -23 142 11 2 1448 35 0 0 0 chr6 113115282 113115317 -36401720 + AT_rich Low_complexity Low_complexity 1 35 0 2 1448 1025 155 193 0 chr6 113115317 113115498 -36401539 - B3 SINE B2 0 216 1 2 1448 373 225 90 0 chr6 113115499 113115588 -36401449 - HAL1-3A_ME LINE L1 -786 2072 1976 2 1448 738 193 113 49 chr6 113115613 113115798 -36401239 - B3 SINE B2 -19 197 1 2 1448 900 235 153 9 chr6 113115902 113116229 -36400808 + ORR1D1 LTR MaLR 1 374 0 2 1448 388 208 28 47 chr6 113116229 113116335 -36400702 + PB1D10 SINE Alu 12 115 -2 2 1448 568 211 73 0 chr6 113116340 113116463 -36400574 + B1_Mur1 SINE Alu 2 133 -16 2 1448 32 0 0 0 chr6 113117282 113117314 -36399723 + AT_rich Low_complexity Low_complexity 1 32 0 2 1448 704 254 0 0 chr6 113117356 113117486 -36399551 - B1_Mur1 SINE Alu -16 133 4 2 1448 637 240 186 22 chr6 113117501 113117684 -36399353 - B3 SINE B2 -3 213 1 2 1448 444 315 0 0 chr6 113117804 113117912 -36399125 - PB1D10 SINE Alu 0 117 10 2 1448 576 0 0 0 chr6 113119574 113119638 -36397399 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1448 212 0 36 0 chr6 113120412 113120440 -36396597 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1448 1182 117 0 0 chr6 113120539 113120779 -36396258 + (CA)n Simple_repeat Simple_repeat 1 240 0 2 1448 264 200 0 0 chr6 113121963 113122018 -36395019 + GA-rich Low_complexity Low_complexity 6 60 0 2 1448 519 282 26 0 chr6 113122332 113122449 -36394588 - ID_B1 SINE B4 -21 203 84 2 1448 375 304 7 49 chr6 113122478 113122620 -36394417 + B1F SINE Alu 1 136 -13 2 1448 190 305 118 35 chr6 113122976 113123061 -36393976 + MIR SINE MIR 27 118 -144 2 1448 254 299 75 75 chr6 113123133 113123292 -36393745 - MIRb SINE MIR -5 263 105 2 1448 439 228 19 38 chr6 113123859 113123964 -36393073 - PB1D10 SINE Alu -3 114 12 2 1448 333 274 60 34 chr6 113124034 113124151 -36392886 - RSINE1 SINE B4 -35 130 11 2 1448 1210 55 0 20 chr6 113124372 113124521 -36392516 + B1_Mus2 SINE Alu 2 147 0 2 1448 23 55 0 18 chr6 113124532 113124554 -36392483 + AT_rich Low_complexity Low_complexity 1 22 0 2 1448 723 259 5 34 chr6 113124554 113124758 -36392279 - B3A SINE B2 0 198 1 2 1448 23 55 0 18 chr6 113124758 113124790 -36392247 + AT_rich Low_complexity Low_complexity 1 32 0 2 1448 331 174 71 118 chr6 113124825 113124994 -36392043 + L1MCa LINE L1 1803 1963 -4545 2 1448 393 149 0 0 chr6 113125004 113125071 -36391966 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1448 350 283 40 10 chr6 113125204 113125304 -36391733 + PB1D7 SINE Alu 5 107 -13 2 1448 22 0 0 0 chr6 113125304 113125326 -36391711 + AT_rich Low_complexity Low_complexity 1 22 0 2 1448 1212 61 0 0 chr6 113125326 113125473 -36391564 - B1_Mus1 SINE Alu 0 148 2 2 1448 21 0 0 0 chr6 113125480 113125501 -36391536 + AT_rich Low_complexity Low_complexity 1 21 0 2 1448 518 283 70 35 chr6 113125695 113125729 -36391308 - RSINE1 SINE B4 -6 159 125 2 1448 477 0 0 0 chr6 113125729 113125782 -36391255 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1448 297 0 0 0 chr6 113125782 113125814 -36391223 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1448 518 283 70 35 chr6 113125814 113125921 -36391116 - RSINE1 SINE B4 -41 124 13 2 1448 1597 57 0 0 chr6 113125921 113126114 -36390923 - B2_Mm1a SINE B2 0 193 1 2 1448 833 207 33 6 chr6 113126159 113126339 -36390698 - B3 SINE B2 -11 205 21 2 1448 341 335 89 6 chr6 113127345 113127513 -36389524 + MIRb SINE MIR 57 238 -30 2 1448 771 227 33 22 chr6 113127545 113127725 -36389312 + B3 SINE B2 30 211 -5 2 1448 229 239 84 0 chr6 113127726 113127797 -36389240 + ID_B1 SINE B4 146 222 -2 2 1448 486 0 0 0 chr6 113129141 113129195 -36387842 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1448 348 24 0 0 chr6 113129195 113129235 -36387802 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1448 233 284 27 0 chr6 113129252 113129326 -36387711 + CT-rich Low_complexity Low_complexity 2 77 0 2 1448 511 118 29 0 chr6 113129431 113129533 -36387504 + (TCTCCC)n Simple_repeat Simple_repeat 4 108 0 2 1448 337 286 61 18 chr6 113130125 113130239 -36386798 - MER20 DNA MER1_type -52 167 49 2 1448 240 111 0 0 chr6 113130452 113130488 -36386549 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2 1448 322 265 39 10 chr6 113130514 113130617 -36386420 + PB1D10 SINE Alu 5 110 -7 2 1448 541 273 73 7 chr6 113130710 113130861 -36386176 + RSINE1 SINE B4 3 163 -2 2 1448 308 326 83 8 chr6 113130886 113131019 -36386018 - MIR SINE MIR -76 186 44 2 1448 1030 217 61 0 chr6 113131063 113131261 -36385776 - B3 SINE B2 -6 210 1 2 1448 511 267 49 10 chr6 113131507 113131660 -36385377 + B3A SINE B2 57 216 0 2 1448 27 29 0 0 chr6 113131660 113131694 -36385343 + AT_rich Low_complexity Low_complexity 1 34 0 2 1448 520 208 115 65 chr6 113131814 113131849 -36385188 - B1_Mm SINE Alu -1 146 119 2 1448 210 37 0 0 chr6 113131849 113131876 -36385161 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 2 1448 526 179 138 1 chr6 113131876 113131979 -36385058 - B1_Mur1 SINE Alu -29 118 1 2 1448 318 236 79 0 chr6 113131997 113132086 -36384951 + MIRb SINE MIR 79 174 -94 2 1448 916 169 0 13 chr6 113132455 113132605 -36384432 + B1_Mus1 SINE Alu 1 148 0 2 1448 400 183 42 14 chr6 113132644 113132716 -36384321 + ID2 SINE ID 5 78 -5 2 1448 279 232 172 13 chr6 113132725 113132882 -36384155 - L1MCa LINE L1 -3103 3218 3037 2 1448 490 178 0 82 chr6 113132892 113132990 -36384047 + B1_Mur1 SINE Alu 59 148 -1 2 1448 979 64 0 0 chr6 113133048 113133173 -36383864 - B1_Mus2 SINE Alu -21 126 2 2 1448 447 202 0 96 chr6 113133072 113133187 -36383850 - MT2B LTR ERVL -344 257 154 2 1448 649 296 30 19 chr6 113133187 113133456 -36383581 - L1MCa LINE L1 -3311 3010 2739 2 1448 555 267 8 8 chr6 113133472 113133604 -36383433 - ID_B1 SINE B4 -8 216 85 2 1448 433 312 45 11 chr6 113133604 113133815 -36383222 - L1MCa LINE L1 -3857 2464 2246 2 1448 558 247 40 69 chr6 113133851 113134025 -36383012 + B4 SINE B4 82 250 -42 2 1448 336 103 0 0 chr6 113134038 113134096 -36382941 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1448 352 243 13 26 chr6 113135490 113135566 -36381471 + ID4 SINE ID 4 78 -5 2 1448 426 320 15 88 chr6 113135644 113135781 -36381256 + ID_B1 SINE B4 84 210 -14 2 1448 198 0 0 0 chr6 113135783 113135805 -36381232 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1448 384 250 91 13 chr6 113135823 113135936 -36381101 + PB1D10 SINE Alu 17 137 -12 2 1448 263 294 0 0 chr6 113136175 113136224 -36380813 + B1F SINE Alu 5 53 -96 2 1448 992 92 105 7 chr6 113136224 113136377 -36380660 + B2_Mm1a SINE B2 2 169 -24 2 1448 230 0 33 0 chr6 113136379 113136409 -36380628 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1448 225 184 0 39 chr6 113136916 113136967 -36380070 - B3 SINE B2 0 216 168 2 1448 324 247 0 47 chr6 113137149 113137234 -36379803 + polypurine Low_complexity Low_complexity 1 81 0 2 1448 322 276 0 37 chr6 113137356 113137465 -36379572 + PB1D10 SINE Alu 3 107 -10 2 1448 338 289 88 0 chr6 113137987 113138101 -36378936 - MIRb SINE MIR -66 202 79 2 1448 235 265 0 0 chr6 113138128 113138177 -36378860 - ID4 SINE ID -4 79 31 2 1448 255 256 102 23 chr6 113138212 113138300 -36378737 - PB1D10 SINE Alu -22 95 1 3 1448 1196 54 0 26 chr6 113138555 113138706 -36378331 + B1_Mm SINE Alu 1 147 0 3 1448 255 41 0 58 chr6 113138706 113138758 -36378279 + (CAA)n Simple_repeat Simple_repeat 3 51 0 3 1448 420 264 36 9 chr6 113138759 113138870 -36378167 + RSINE1 SINE B4 12 125 -40 3 1448 266 143 0 0 chr6 113138988 113139030 -36378007 - ID_B1 SINE B4 0 224 183 3 1448 314 345 82 111 chr6 113139526 113139575 -36377462 + MLT1K LTR MaLR 236 281 -314 3 1448 480 48 0 0 chr6 113139575 113139638 -36377399 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1448 845 151 7 28 chr6 113139638 113139781 -36377256 - B1_Mur3 SINE Alu -9 140 1 3 1448 314 345 82 111 chr6 113139781 113139871 -36377166 + MLT1K LTR MaLR 282 377 -218 3 1448 948 150 249 0 chr6 113139871 113140044 -36376993 + B3 SINE B2 1 216 0 3 1448 314 345 82 111 chr6 113140044 113140244 -36376793 + MLT1K LTR MaLR 378 566 -29 3 1448 556 229 48 65 chr6 113140345 113140510 -36376527 + RLTR40 LTR ERVK 9 170 -647 3 1448 849 103 0 0 chr6 113140510 113140627 -36376410 + B1_Mm SINE Alu 1 117 -30 3 1448 1095 100 0 7 chr6 113140610 113140761 -36376276 - B2_Mm2 SINE B2 -43 152 3 3 1448 507 174 11 11 chr6 113140761 113140830 -36376207 + ORR1C2 LTR MaLR 316 384 0 3 1448 692 54 0 11 chr6 113140906 113141000 -36376037 + (GGGGA)n Simple_repeat Simple_repeat 4 96 0 3 1448 223 244 0 0 chr6 113141297 113141338 -36375699 + B3A SINE B2 1 41 -157 3 1448 236 217 13 127 chr6 113141339 113141418 -36375619 + MLT2D LTR ERVL 181 250 -164 3 1448 351 0 0 0 chr6 113141441 113141480 -36375557 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1448 224 336 47 16 chr6 113141681 113141708 -36375329 + MIRc SINE MIR 20 45 -223 3 1448 197 33 33 0 chr6 113141708 113141738 -36375299 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 3 1448 224 251 118 28 chr6 113141738 113141858 -36375179 + MIRc SINE MIR 46 172 -36 3 1448 771 255 12 9 chr6 113142189 113142402 -36374635 + B3A SINE B2 2 216 0 3 1448 377 362 39 39 chr6 113142537 113142744 -36374293 + MARNA DNA Mariner 207 413 -173 3 1448 181 206 100 98 chr6 113143347 113143441 -36373596 - MIRc SINE MIR -101 167 79 3 1448 22 0 0 0 chr6 113144220 113144242 -36372795 + GC_rich Low_complexity Low_complexity 1 22 0 3 1448 31 76 0 0 chr6 113145334 113145400 -36371637 + GC_rich Low_complexity Low_complexity 1 66 0 3 1448 214 238 0 0 chr6 113145423 113145465 -36371572 + G-rich Low_complexity Low_complexity 6 47 0 3 1448 204 237 164 0 chr6 113146139 113146213 -36370824 + MIRc SINE MIR 86 171 -91 3 1448 459 0 0 0 chr6 113146213 113146264 -36370773 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1448 209 128 0 21 chr6 113146412 113146460 -36370577 + (TTTTTG)n Simple_repeat Simple_repeat 3 49 0 3 1448 603 262 102 73 chr6 113146487 113146693 -36370344 - ID_B1 SINE B4 -4 220 9 3 1448 246 289 12 24 chr6 113147477 113147562 -36369475 + MLT1K LTR MaLR 512 595 0 3 1448 717 239 9 15 chr6 113147609 113147757 -36369280 - ID_B1 SINE B4 -68 224 83 3 1448 191 298 53 0 chr6 113147811 113147868 -36369169 + MIRc SINE MIR 47 106 -162 3 1448 482 173 28 17 chr6 113147897 113148005 -36369032 - PB1D10 SINE Alu -11 106 1 3 1448 375 154 0 0 chr6 113148008 113148073 -36368964 + (CTG)n Simple_repeat Simple_repeat 1 65 0 3 1448 385 241 12 0 chr6 113148083 113148166 -36368871 - B1F SINE Alu -41 108 25 3 1448 530 221 57 7 chr6 113148172 113148313 -36368724 + MIRc SINE MIR 119 266 -2 3 1448 269 200 48 32 chr6 113148635 113148697 -36368340 + ID4_ SINE ID 3 65 -18 3 1448 198 103 0 0 chr6 113148800 113148829 -36368208 + (CAG)n Simple_repeat Simple_repeat 2 30 0 3 1448 501 301 68 0 chr6 113148852 113148985 -36368052 + ID_B1 SINE B4 83 224 0 3 1448 654 177 9 26 chr6 113148989 113149105 -36367932 + PB1D9 SINE Alu 1 114 -6 3 1448 216 0 0 0 chr6 113149109 113149133 -36367904 + (CCA)n Simple_repeat Simple_repeat 1 24 0 3 1448 183 80 0 0 chr6 113149133 113149158 -36367879 + (CAG)n Simple_repeat Simple_repeat 3 27 0 3 1448 594 269 38 133 chr6 113149174 113149384 -36367653 + B4A SINE B4 1 190 -102 3 1448 6949 56 0 0 chr6 113149400 113150251 -36366786 - L1Md_F2 LINE L1 -311 5572 4722 3 1448 8210 45 2 0 chr6 113150265 113151282 -36365755 + L1Md_F2 LINE L1 5587 6582 0 3 1448 206 61 82 0 chr6 113151358 113151407 -36365630 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1448 693 92 34 34 chr6 113151428 113151607 -36365430 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1448 387 128 45 9 chr6 113151655 113151765 -36365272 + (CA)n Simple_repeat Simple_repeat 2 115 0 3 1448 661 68 53 20 chr6 113151778 113151928 -36365109 + (CA)n Simple_repeat Simple_repeat 2 156 0 3 1448 615 181 180 77 chr6 113152137 113152306 -36364731 + MLT1B LTR MaLR 7 196 -194 3 1448 1064 169 29 88 chr6 113152306 113152393 -36364644 - URR1A DNA MER1_type 0 226 157 3 1448 1183 21 35 0 chr6 113152393 113152534 -36364503 - B1_Mm SINE Alu -1 146 1 3 1448 1064 169 29 88 chr6 113152534 113152686 -36364351 - URR1A DNA MER1_type -70 156 1 3 1448 615 181 180 77 chr6 113152686 113152749 -36364288 + MLT1B LTR MaLR 197 263 -127 3 1448 492 227 81 40 chr6 113152792 113152916 -36364121 + B1_Mur1 SINE Alu 1 129 -20 3 1448 420 20 0 0 chr6 113152916 113152965 -36364072 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1448 21 36 0 0 chr6 113152983 113153011 -36364026 + AT_rich Low_complexity Low_complexity 1 28 0 3 1448 494 255 19 19 chr6 113153012 113153120 -36363917 + PB1D7 SINE Alu 13 120 0 3 1448 1450 269 59 38 chr6 113153180 113153702 -36363335 + MT2A LTR ERVL 1 533 0 3 1448 1356 187 63 60 chr6 113153730 113154049 -36362988 - ORR1C2 LTR MaLR -64 320 1 3 1448 227 200 0 0 chr6 113154080 113154125 -36362912 + B3A SINE B2 7 51 -147 3 1448 2802 118 12 14 chr6 113154125 113154442 -36362595 + MTC LTR MaLR 1 322 -99 3 1448 2380 121 55 3 chr6 113154442 113154807 -36362230 - ORR1C2 LTR MaLR 0 384 1 3 1448 2802 118 12 14 chr6 113154807 113154911 -36362126 + MTC LTR MaLR 323 421 0 3 1448 532 174 65 0 chr6 113154911 113155003 -36362034 + B3A SINE B2 47 144 -54 3 1448 636 14 0 0 chr6 113155005 113155078 -36361959 + (TC)n Simple_repeat Simple_repeat 1 73 0 3 1448 189 0 0 0 chr6 113155078 113155098 -36361939 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1448 259 299 13 25 chr6 113155210 113155289 -36361748 + ID4 SINE ID 3 80 -3 3 1448 4578 58 52 2 chr6 113155306 113155907 -36361130 + L1_Mus3 LINE L1 6008 6638 0 3 1448 211 163 0 75 chr6 113155950 113155963 -36361074 + A-rich Low_complexity Low_complexity 3 15 0 3 1448 983 103 99 39 chr6 113155963 113156106 -36360931 + B2_Mm2 SINE B2 2 162 -33 3 1448 324 0 0 0 chr6 113156106 113156142 -36360895 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1448 983 103 99 39 chr6 113156142 113156180 -36360857 + B2_Mm2 SINE B2 163 194 -1 3 1448 211 163 0 75 chr6 113156180 113156219 -36360818 + A-rich Low_complexity Low_complexity 16 51 0 3 1448 1235 54 0 0 chr6 113156255 113156403 -36360634 + B1_Mus1 SINE Alu 1 148 0 3 1448 252 0 0 0 chr6 113156412 113156440 -36360597 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1448 236 240 122 20 chr6 113156514 113156612 -36360425 - L1M2 LINE L1 -1192 4951 4844 3 1448 296 213 0 32 chr6 113156647 113156710 -36360327 + PB1D10 SINE Alu 47 107 -10 3 1448 874 145 29 0 chr6 113156727 113156865 -36360172 + B1_Mur1 SINE Alu 1 142 -7 3 1448 2501 165 70 95 chr6 113156926 113157516 -36359521 - RMER15 LTR ERVL 0 575 1 3 1448 492 18 0 0 chr6 113157712 113157769 -36359268 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 3 1448 297 194 15 46 chr6 113157781 113157846 -36359191 + PB1D7 SINE Alu 56 118 -2 3 1448 597 246 77 0 chr6 113157868 113157998 -36359039 + ID_B1 SINE B4 84 223 -1 3 1448 436 259 72 22 chr6 113158322 113158460 -36358577 - L1ME1 LINE L1 -75 6104 5960 3 1448 329 306 89 16 chr6 113158501 113158624 -36358413 - L1ME1 LINE L1 -353 5826 5695 3 1448 457 217 12 0 chr6 113158630 113158713 -36358324 + B1F SINE Alu 56 139 -10 3 1448 275 219 31 0 chr6 113158727 113158791 -36358246 - L1ME1 LINE L1 -597 5567 5502 3 1448 519 31 0 0 chr6 113158800 113158865 -36358172 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1448 183 162 0 0 chr6 113158888 113158925 -36358112 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 3 1448 457 228 76 34 chr6 113158946 113158957 -36358080 - ID_B1 SINE B4 0 224 215 3 1448 1471 58 11 0 chr6 113158957 113159146 -36357891 - B2_Mm1t SINE B2 -1 192 2 3 1448 457 228 76 34 chr6 113159146 113159252 -36357785 - ID_B1 SINE B4 -10 214 102 3 1448 207 0 0 0 chr6 113159337 113159360 -36357677 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1448 601 232 21 21 chr6 113159516 113159657 -36357380 - B4 SINE B4 -35 257 117 3 1448 1996 126 116 6 chr6 113159747 113160082 -36356955 - RMER1B Other Other 0 1066 695 3 1448 1422 50 0 0 chr6 113160259 113160438 -36356599 + (CCA)n Simple_repeat Simple_repeat 1 179 0 3 1448 409 274 113 17 chr6 113160483 113160598 -36356439 - RSINE1 SINE B4 -38 127 2 3 1448 414 196 20 30 chr6 113160605 113160705 -36356332 - PB1D10 SINE Alu -10 107 9 3 1448 405 167 7 28 chr6 113160999 113161141 -36355896 + (CAGAGA)n Simple_repeat Simple_repeat 4 142 0 3 1448 318 303 80 33 chr6 113161668 113161818 -36355219 - L1MD LINE L1 -1011 5135 4979 3 1448 282 311 22 22 chr6 113161818 113161910 -36355127 - PB1D10 SINE Alu -22 95 4 3 1448 587 211 56 50 chr6 113161910 113161992 -36355045 - ID SINE ID -141 83 1 3 1448 289 215 17 0 chr6 113162013 113162094 -36354943 - L1MD LINE L1 -1208 4938 4853 3 1448 264 301 68 0 chr6 113162098 113162201 -36354836 + PB1D7 SINE Alu 2 111 -9 3 1448 691 257 21 25 chr6 113162214 113162434 -36354603 + B3A SINE B2 2 216 0 3 1448 1183 68 0 13 chr6 113162441 113162591 -36354446 + B1_Mus1 SINE Alu 1 148 0 3 1448 183 80 0 0 chr6 113162591 113162616 -36354421 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1448 1035 292 84 17 chr6 113162625 113163099 -36353938 + L1MB8 LINE L1 5661 6166 -12 3 1448 223 289 0 0 chr6 113163119 113163164 -36353873 + B1F SINE Alu 1 45 -104 3 1448 1386 62 11 33 chr6 113163176 113163360 -36353677 + B2_Mm1t SINE B2 1 180 -13 3 1448 328 146 0 18 chr6 113163382 113163438 -36353599 + B2_Mm2 SINE B2 47 101 -94 3 1448 305 278 56 0 chr6 113163505 113163595 -36353442 + ID_B1 SINE B4 123 217 -7 3 1448 506 246 66 22 chr6 113163649 113163786 -36353251 + B1F SINE Alu 1 143 -6 3 1448 362 324 21 35 chr6 113163875 113164019 -36353018 - B1F2 SINE Alu -1 148 7 3 1448 302 321 44 9 chr6 113164030 113164143 -36352894 - L1M5 LINE L1 -1344 4802 4686 4 1448 441 252 88 26 chr6 113164161 113164275 -36352762 + RSINE1 SINE B4 21 141 -24 4 1448 411 21 0 0 chr6 113164275 113164323 -36352714 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1448 554 296 89 30 chr6 113164332 113164761 -36352276 - L1M5 LINE L1 -1450 4696 4243 4 1448 317 267 133 0 chr6 113164839 113164929 -36352108 - PB1D10 SINE Alu -1 116 15 4 1448 573 283 12 36 chr6 113164916 113165081 -36351956 - RSINE1 SINE B4 -4 161 1 4 1448 339 290 10 31 chr6 113165155 113165251 -36351786 - PB1D10 SINE Alu 0 117 24 4 1448 295 246 201 12 chr6 113165391 113165560 -36351477 - L1MD LINE L1 -2146 4000 3800 3 1448 586 231 8 30 chr6 113165645 113165779 -36351258 + B1_Mur1 SINE Alu 19 149 0 4 1448 775 305 120 23 chr6 113165743 113166042 -36350995 + MLT1A0 LTR MaLR 38 365 0 4 1448 657 224 180 0 chr6 113166081 113166264 -36350773 - B3 SINE B2 0 216 1 4 1448 941 214 10 25 chr6 113166381 113166578 -36350459 - B3 SINE B2 0 216 23 4 1448 261 219 14 0 chr6 113166592 113166665 -36350372 - L1M3 LINE L1 -1821 4319 4246 4 1448 755 172 7 7 chr6 113166683 113166818 -36350219 - B1_Mur2 SINE Alu -1 148 14 4 1448 244 295 69 15 chr6 113166839 113166970 -36350067 - L1M3 LINE L1 -3071 3075 2938 4 1448 662 270 68 98 chr6 113166983 113167279 -36349758 - Lx8 LINE L1 -2 7471 7185 4 1448 456 326 57 21 chr6 113167282 113167551 -36349486 - L1M2 LINE L1 -3238 2905 2651 4 1448 28 0 0 0 chr6 113167555 113167583 -36349454 + AT_rich Low_complexity Low_complexity 1 28 0 4 1448 337 255 73 64 chr6 113167583 113167595 -36349442 - RSINE1 SINE B4 -29 136 126 4 1448 369 0 0 0 chr6 113167595 113167636 -36349401 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1448 337 255 73 64 chr6 113167636 113167732 -36349305 - RSINE1 SINE B4 -40 125 27 4 1448 44 0 0 0 chr6 113167732 113167776 -36349261 + AT_rich Low_complexity Low_complexity 1 44 0 4 1448 838 45 0 18 chr6 113167776 113167889 -36349148 - B1_Mus1 SINE Alu 0 148 38 4 1448 339 315 80 9 chr6 113167925 113167945 -36349092 - L1M2 LINE L1 -3457 2686 2663 4 1448 401 247 67 67 chr6 113167945 113168110 -36348927 - RSINE1 SINE B4 0 165 1 4 1448 339 315 80 9 chr6 113168110 113168201 -36348836 - L1M2 LINE L1 -3481 2662 2567 4 1448 289 136 0 0 chr6 113168570 113168614 -36348423 + B1_Mus2 SINE Alu 78 121 -26 4 1448 693 239 26 6 chr6 113168719 113168875 -36348162 - B3 SINE B2 -18 198 40 4 1448 466 274 9 0 chr6 113168969 113169075 -36347962 + PB1D10 SINE Alu 10 116 -1 4 1448 375 292 47 0 chr6 113169319 113169425 -36347612 - PB1D10 SINE Alu 0 117 7 4 1448 241 82 41 0 chr6 113169456 113169505 -36347532 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1448 874 73 163 0 chr6 113169514 113169637 -36347400 - B1_Mus2 SINE Alu -4 143 1 4 1448 7501 33 1 0 chr6 113169825 113170692 -36346345 - L1Md_T LINE L1 0 6582 5715 4 1448 4209 19 0 0 chr6 113170684 113171155 -36345882 + L1Md_T LINE L1 5242 5712 -171 4 1448 513 0 0 0 chr6 113171248 113171305 -36345732 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1448 279 0 0 0 chr6 113171305 113171335 -36345702 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1448 1458 58 9 34 chr6 113171522 113171730 -36345307 + B2_Mm1a SINE B2 2 216 0 4 1448 730 209 0 45 chr6 113171761 113171916 -36345121 + B1F SINE Alu 1 148 -1 4 1448 644 250 8 0 chr6 113171955 113172079 -36344958 + ID_B1 SINE B4 85 209 -15 4 1448 370 236 27 45 chr6 113172186 113172297 -36344740 - B1F SINE Alu -40 109 1 4 1448 282 377 17 17 chr6 113172525 113172703 -36344334 - ALINE LINE RTE -288 329 152 4 1448 451 264 108 0 chr6 113173043 113173172 -36343865 + B1F SINE Alu 1 143 -6 4 1448 1013 186 52 0 chr6 113173188 113173381 -36343656 + B3 SINE B2 3 205 -11 4 1448 460 276 56 56 chr6 113173439 113173600 -36343437 + RSINE1 SINE B4 5 165 0 4 1448 491 291 0 15 chr6 113173717 113173853 -36343184 - ID_B1 SINE B4 0 224 91 4 1448 309 151 0 0 chr6 113173854 113173907 -36343130 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 1448 507 33 0 0 chr6 113173907 113173968 -36343069 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1448 393 154 341 0 chr6 113173973 113174064 -36342973 - B1F SINE Alu -17 132 11 4 1448 272 301 27 27 chr6 113174056 113174131 -36342906 + Zaphod DNA Tip100 152 226 -3805 4 1448 290 329 0 13 chr6 113174144 113174221 -36342816 + ID2 SINE ID 2 77 -6 4 1448 276 316 72 14 chr6 113174221 113174282 -36342755 + B4A SINE B4 2 147 -145 4 1448 257 261 152 0 chr6 113174232 113174324 -36342713 + PB1D10 SINE Alu 12 117 0 4 1448 374 263 120 87 chr6 113174341 113174491 -36342546 + RSINE1 SINE B4 5 159 -6 4 1448 772 192 233 0 chr6 113174520 113174692 -36342345 + B3 SINE B2 1 212 -4 4 1448 22 0 0 0 chr6 113174710 113174732 -36342305 + AT_rich Low_complexity Low_complexity 1 22 0 4 1448 630 259 79 5 chr6 113174751 113174941 -36342096 - B3 SINE B2 -11 205 2 4 1448 306 250 46 35 chr6 113175012 113175099 -36341938 + Zaphod DNA Tip100 382 469 -3562 4 1448 547 236 24 0 chr6 113175155 113175278 -36341759 + B1_Mus1 SINE Alu 2 127 -21 4 1448 320 303 127 96 chr6 113175380 113175456 -36341581 - RSINE1 SINE B4 -2 163 98 4 1448 342 0 0 0 chr6 113175456 113175494 -36341543 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1448 320 303 127 96 chr6 113175494 113175574 -36341463 - RSINE1 SINE B4 -68 97 2 4 1448 263 292 28 0 chr6 113176044 113176116 -36340921 + PB1D7 SINE Alu 18 91 -29 4 1448 437 268 102 0 chr6 113176137 113176264 -36340773 + ID_B1 SINE B4 80 219 -5 4 1448 23 33 0 0 chr6 113176277 113176307 -36340730 + AT_rich Low_complexity Low_complexity 1 30 0 4 1448 365 301 43 17 chr6 113176307 113176422 -36340615 + PB1D7 SINE Alu 2 119 -1 4 1448 592 172 75 33 chr6 113176434 113176554 -36340483 + B1_Mur2 SINE Alu 25 149 0 4 1448 21 0 0 0 chr6 113177142 113177163 -36339874 + AT_rich Low_complexity Low_complexity 1 21 0 4 1448 765 112 0 0 chr6 113177165 113177272 -36339765 - B1_Mur3 SINE Alu -1 148 42 4 1448 234 85 0 161 chr6 113177222 113177278 -36339759 - 4.5SRNA scRNA scRNA -8 86 40 4 1448 511 164 0 0 chr6 113177280 113177384 -36339653 + CT-rich Low_complexity Low_complexity 73 176 0 4 1448 306 93 89 36 chr6 113177384 113177440 -36339597 - B1_Mus1 SINE Alu -88 60 2 4 1448 445 324 22 0 chr6 113177452 113177588 -36339449 - Lx8 LINE L1 -132 7341 7203 4 1448 1372 302 70 35 chr6 113177617 113177800 -36339237 - Lx8 LINE L1 -453 7020 6811 4 1448 2825 36 2 121 chr6 113177800 113178214 -36338823 + RLTR10B2 LTR ERVK 1 365 0 4 1448 1372 302 70 35 chr6 113178214 113178544 -36338493 - Lx8 LINE L1 -663 6810 6489 4 1448 2306 142 25 3 chr6 113178552 113178906 -36338131 - ORR1B2 LTR MaLR -5 362 1 4 1448 338 284 11 0 chr6 113178906 113178994 -36338043 - Lx8 LINE L1 -985 6488 6400 4 1448 1091 58 43 0 chr6 113179025 113179164 -36337873 - B1_Mm SINE Alu -1 146 2 4 1448 357 119 188 29 chr6 113179175 113179233 -36337804 - Lx8 LINE L1 -1069 6404 6338 4 1448 225 0 0 0 chr6 113179233 113179258 -36337779 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1448 1033 255 22 97 chr6 113179268 113179792 -36337245 + RLTR11B LTR ERVK 1 494 -34 4 1448 530 238 166 7 chr6 113179850 113180005 -36337032 - Lx8 LINE L1 -1388 6308 6127 4 1448 297 293 130 10 chr6 113180007 113180107 -36336930 - MTD LTR MaLR -256 163 52 4 1448 186 43 0 0 chr6 113180192 113180215 -36336822 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4 1448 1114 43 43 7 chr6 113180235 113180376 -36336661 - B1_Mus1 SINE Alu -1 147 2 4 1448 608 278 22 34 chr6 113180402 113180581 -36336456 - Lx6 LINE L1 -26 7434 7258 4 1448 411 170 39 0 chr6 113180715 113180868 -36336169 + (TG)n Simple_repeat Simple_repeat 1 159 0 4 1448 381 260 18 89 chr6 113180879 113181048 -36335989 - RSINE1 SINE B4 -7 158 2 4 1448 948 186 9 76 chr6 113181177 113181387 -36335650 + B3A SINE B2 2 197 -1 4 1448 2023 242 31 64 chr6 113181648 113182165 -36334872 + RLTR18B LTR ERVK 1 500 -12 4 1448 919 138 29 0 chr6 113182413 113182551 -36334486 + B1_Mur2 SINE Alu 8 149 0 4 1448 593 236 54 27 chr6 113182587 113182735 -36334302 - RSINE1 SINE B4 -12 153 2 4 1448 619 293 124 20 chr6 113182988 113183190 -36333847 + ID_B1 SINE B4 1 223 -1 4 1448 350 342 26 26 chr6 113183301 113183415 -36333622 - PB1D10 SINE Alu 0 117 4 4 1448 443 245 28 19 chr6 113183535 113183643 -36333394 + PB1D7 SINE Alu 10 118 -2 4 1448 385 287 21 0 chr6 113184172 113184266 -36332771 - PB1D7 SINE Alu -8 112 17 4 1448 195 69 0 0 chr6 113184503 113184532 -36332505 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1448 225 0 0 0 chr6 113184623 113184648 -36332389 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1448 251 175 18 0 chr6 113184648 113184705 -36332332 + GA-rich Low_complexity Low_complexity 6 63 0 4 1448 574 244 200 0 chr6 113184765 113184945 -36332092 + ID_B1 SINE B4 2 217 -7 4 1448 326 279 46 37 chr6 113184989 113185097 -36331940 - B1_Mur1 SINE Alu -30 119 11 4 1448 326 192 0 110 chr6 113185092 113185174 -36331863 + B1F SINE Alu 77 149 0 4 1448 487 181 60 0 chr6 113185203 113185319 -36331718 + L1ME1 LINE L1 5316 5438 -735 4 1448 317 225 184 21 chr6 113185330 113185471 -36331566 + L1ME1 LINE L1 5880 6043 -136 4 1448 699 232 86 53 chr6 113185717 113185904 -36331133 + ID_B1 SINE B4 15 207 -17 4 1448 1102 69 7 52 chr6 113185942 113186095 -36330942 - B1_Mus2 SINE Alu -1 146 1 4 1448 281 303 53 35 chr6 113186198 113186311 -36330726 - PB1D7 SINE Alu -5 115 1 4 1448 1274 239 91 29 chr6 113186344 113186685 -36330352 - MTD LTR MaLR -15 404 43 4 1448 24 0 0 0 chr6 113186725 113186749 -36330288 + AT_rich Low_complexity Low_complexity 1 24 0 4 1448 318 269 15 39 chr6 113187140 113187156 -36329881 + PB1D10 SINE Alu 14 52 -65 4 1448 345 265 0 0 chr6 113187156 113187224 -36329813 + ID_B1 SINE B4 110 177 -47 4 1448 318 269 15 39 chr6 113187224 113187247 -36329790 + PB1D10 SINE Alu 53 116 -1 4 1448 260 266 71 41 chr6 113188962 113189060 -36327977 - MER5A DNA MER1_type -25 164 64 4 1448 791 299 10 10 chr6 113189059 113189255 -36327782 - ID_B1 SINE B4 -26 198 3 4 1448 401 292 68 15 chr6 113189265 113189397 -36327640 - B1F1 SINE Alu -10 139 1 4 1448 329 286 0 0 chr6 113189808 113189878 -36327159 - PB1D10 SINE Alu -47 70 1 5 1448 238 120 60 0 chr6 113189996 113190046 -36326991 - B1F SINE Alu -1 148 96 5 1448 712 207 0 21 chr6 113190756 113190899 -36326138 - ID_B1 SINE B4 -5 219 80 5 1448 267 305 36 54 chr6 113190935 113191046 -36325991 + MIR SINE MIR 18 126 -136 5 1448 1603 32 0 16 chr6 113191665 113191855 -36325182 + B2_Mm1a SINE B2 2 188 -5 5 1448 296 291 0 0 chr6 113191892 113191971 -36325066 + CT-rich Low_complexity Low_complexity 4 82 0 5 1448 297 210 191 48 chr6 113191996 113192101 -36324936 - PB1D7 SINE Alu 0 120 1 5 1448 182 260 39 39 chr6 113192148 113192200 -36324837 - L2 LINE L2 -2116 1303 1252 5 1448 315 183 0 0 chr6 113192351 113192433 -36324604 + T-rich Low_complexity Low_complexity 1 82 0 5 1448 1226 48 0 0 chr6 113192443 113192590 -36324447 - B1_Mus2 SINE Alu 0 147 1 5 1448 332 289 36 0 chr6 113192802 113192885 -36324152 - ID_B1 SINE B4 -52 172 87 5 1448 363 254 59 8 chr6 113192957 113193076 -36323961 - MER5A1 DNA MER1_type -16 150 26 5 1448 374 299 186 33 chr6 113193131 113193314 -36323723 + ID_B1 SINE B4 13 223 -1 5 1448 223 276 100 33 chr6 113193365 113193455 -36323582 - MIR SINE MIR -92 170 75 5 1448 483 321 30 7 chr6 113193610 113193745 -36323292 - B3A SINE B2 -16 182 45 5 1448 565 209 19 9 chr6 113193733 113193839 -36323198 - B1_Mur3 SINE Alu -17 132 26 5 1448 331 179 51 0 chr6 113194346 113194415 -36322622 + PB1D7 SINE Alu 35 108 -12 5 1448 323 315 133 84 chr6 113194441 113194704 -36322333 + B4 SINE B4 2 277 -15 5 1448 288 0 0 0 chr6 113194735 113194767 -36322270 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 5 1448 698 169 64 35 chr6 113194839 113194980 -36322057 + B1_Mur4 SINE Alu 6 150 0 5 1448 1462 59 21 5 chr6 113195171 113195357 -36321680 + B2_Mm1t SINE B2 1 189 -4 5 1448 1167 62 21 0 chr6 113195365 113195510 -36321527 + B1_Mus1 SINE Alu 1 148 0 5 1448 314 188 189 56 chr6 113195892 113195982 -36321055 + PB1D10 SINE Alu 26 127 0 5 1448 301 175 43 35 chr6 113196053 113196128 -36320909 - B1_Mur1 SINE Alu -3 146 31 5 1448 536 292 65 7 chr6 113196188 113196326 -36320711 - ID_B1 SINE B4 -1 223 78 5 1448 490 314 81 46 chr6 113196409 113196669 -36320368 - B4A SINE B4 -17 275 7 5 1448 331 260 140 0 chr6 113196671 113196771 -36320266 - ID_B1 SINE B4 -3 221 108 5 1448 215 61 0 29 chr6 113197551 113197585 -36319452 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1448 484 246 129 39 chr6 113197646 113197824 -36319213 - Lx8 LINE L1 -101 7372 7179 5 1448 262 296 44 53 chr6 113197867 113197887 -36319150 + MT2B LTR ERVL 141 159 -442 5 1448 419 282 76 0 chr6 113197887 113198018 -36319019 + B1F SINE Alu 1 141 -8 5 1448 786 173 15 8 chr6 113198338 113198472 -36318565 - B1_Mur3 SINE Alu -14 135 1 5 1448 499 271 118 15 chr6 113198474 113198609 -36318428 - B1F2 SINE Alu 0 149 1 5 1448 279 176 217 64 chr6 113198908 113199055 -36317982 - B4 SINE B4 -6 286 119 5 1448 630 250 28 14 chr6 113199166 113199308 -36317729 - B1F SINE Alu -5 144 1 5 1448 515 296 25 88 chr6 113199472 113199631 -36317406 + B1F SINE Alu 1 149 0 5 1448 194 216 27 0 chr6 113200188 113200225 -36316812 + MIR SINE MIR 31 68 -194 5 1448 389 222 21 43 chr6 113200747 113200841 -36316196 - PB1D7 SINE Alu -1 119 28 5 1448 226 190 66 49 chr6 113201031 113201092 -36315945 - B1F SINE Alu -86 63 2 5 1448 587 288 99 31 chr6 113201115 113201337 -36315700 - B4A SINE B4 -38 254 18 5 1448 970 68 114 0 chr6 113201368 113201500 -36315537 - B1_Mus2 SINE Alu 0 147 1 5 1448 275 277 53 114 chr6 113201500 113201608 -36315429 - PB1D10 SINE Alu -10 107 6 5 1448 1068 106 60 27 chr6 113202055 113202239 -36314798 - B2_Mm2 SINE B2 -4 191 2 5 1448 279 264 62 106 chr6 113202446 113202607 -36314430 + RSINE1 SINE B4 4 157 -8 5 1448 219 161 17 35 chr6 113202822 113202880 -36314157 + T-rich Low_complexity Low_complexity 3 59 0 5 1448 373 222 0 47 chr6 113202939 113203024 -36314013 - ID_B1 SINE B4 -11 213 133 5 1448 645 111 252 17 chr6 113203085 113203204 -36313833 + B1_Mus1 SINE Alu 1 147 -1 5 1448 224 294 98 62 chr6 113203293 113203456 -36313581 + MIRb SINE MIR 11 179 -89 5 1448 199 54 26 26 chr6 113204590 113204628 -36312409 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1448 347 185 0 44 chr6 113204684 113204752 -36312285 - ID_B1 SINE B4 -1 223 159 5 1448 328 276 190 0 chr6 113204686 113204802 -36312235 - B1F2 SINE Alu 0 149 12 5 1448 551 85 0 12 chr6 113205254 113205337 -36311700 + (TCC)n Simple_repeat Simple_repeat 1 82 0 5 1448 1004 274 64 4 chr6 113206114 113206378 -36310659 - B4A SINE B4 -12 280 1 5 1448 216 0 0 0 chr6 113206379 113206403 -36310634 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1448 212 254 0 0 chr6 113206411 113206474 -36310563 + T-rich Low_complexity Low_complexity 1 63 0 5 1448 535 231 112 0 chr6 113206503 113206637 -36310400 - B1F1 SINE Alu 0 149 1 5 1448 261 319 14 0 chr6 113208035 113208107 -36308930 + MIRc SINE MIR 94 166 -102 5 1448 1429 40 0 28 chr6 113208470 113208489 -36308548 - B2_Mm1a SINE B2 -18 175 161 5 1448 279 0 0 0 chr6 113208489 113208520 -36308517 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 5 1448 1429 40 0 28 chr6 113208520 113208679 -36308358 - B2_Mm1a SINE B2 -33 160 2 5 1448 622 115 47 19 chr6 113209375 113209481 -36307556 + B1_Mur1 SINE Alu 41 149 0 5 1448 1135 114 62 17 chr6 113209486 113209664 -36307373 + B2_Mm2 SINE B2 2 187 -8 5 1448 1235 34 7 0 chr6 113209667 113209813 -36307224 + B1_Mus2 SINE Alu 1 147 0 5 1448 340 139 76 0 chr6 113210972 113211051 -36305986 - L1Md_F2 LINE L1 -1 6581 6497 5 1448 449 222 0 32 chr6 113211402 113211495 -36305542 - B1_Mm SINE Alu 0 147 58 5 1448 189 228 175 0 chr6 113212072 113212129 -36304908 + MIRm SINE MIR 163 229 -47 5 1448 311 240 135 0 chr6 113212131 113212227 -36304810 + PB1D10 SINE Alu 1 109 -8 5 1448 366 228 0 12 chr6 113212232 113212312 -36304725 - RSINE1 SINE B4 -82 83 5 5 1448 294 268 57 29 chr6 113213931 113214041 -36302996 + B1F2 SINE Alu 2 119 -1 5 1448 739 230 7 0 chr6 113214041 113214180 -36302857 + RSINE1 SINE B4 2 141 -24 5 1448 622 184 117 91 chr6 113214224 113214421 -36302616 - B3 SINE B2 -14 202 1 5 1448 237 83 0 0 chr6 113214425 113214461 -36302576 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1448 1043 31 39 0 chr6 113214716 113214846 -36302191 - B1_Mus2 SINE Alu 0 147 13 5 1448 377 226 127 93 chr6 113215026 113215231 -36301806 - ID_B1 SINE B4 -9 215 4 5 1448 351 274 71 54 chr6 113215242 113215354 -36301683 - B1F1 SINE Alu -1 116 3 5 1448 292 350 93 8 chr6 113215624 113215742 -36301295 + RSINE1 SINE B4 28 155 -10 5 1448 349 269 57 19 chr6 113217712 113217818 -36299219 - MER103 DNA DNA -35 131 22 5 1448 243 88 0 0 chr6 113217845 113217879 -36299158 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1448 400 221 12 20 chr6 113218921 113219027 -36298010 + ID4_ SINE ID 8 110 -42 5 1448 554 213 79 0 chr6 113223858 113223985 -36293052 + B1_Mur1 SINE Alu 1 137 -12 5 1448 1061 49 0 7 chr6 113224009 113224152 -36292885 - B1_Mus1 SINE Alu -1 147 6 5 1448 1275 87 49 0 chr6 113224164 113224349 -36292688 - B2_Mm2 SINE B2 -1 194 1 5 1448 232 308 124 57 chr6 113224393 113224586 -36292451 + MIRb SINE MIR 29 234 -34 5 1448 411 299 75 25 chr6 113226065 113226185 -36290852 + RSINE1 SINE B4 40 165 0 5 1448 296 250 0 14 chr6 113226226 113226295 -36290742 + B1F SINE Alu 40 107 -42 5 1448 882 177 189 22 chr6 113226361 113226546 -36290491 + B3 SINE B2 1 216 0 5 1448 1108 99 60 0 chr6 113226710 113226892 -36290145 - B2_Mm1a SINE B2 0 193 1 5 1448 394 228 13 0 chr6 113226927 113227006 -36290031 + B1F SINE Alu 27 106 -43 5 1448 559 270 78 0 chr6 113228621 113228825 -36288212 - ID_B1 SINE B4 -3 221 2 5 1448 243 292 75 43 chr6 113231307 113231400 -36285637 - BC1_Mm scRNA scRNA -56 96 1 5 1448 1112 55 7 0 chr6 113231534 113231679 -36285358 - B1_Mus2 SINE Alu 0 147 2 5 1448 205 214 0 0 chr6 113232014 113232056 -36284981 - MIR SINE MIR -155 107 66 5 1448 348 361 22 11 chr6 113235379 113235558 -36281479 - L2 LINE L2 -731 2688 2508 5 1448 666 37 0 0 chr6 113235564 113235645 -36281392 + (TGG)n Simple_repeat Simple_repeat 2 82 0 5 1448 498 220 37 0 chr6 113235665 113235774 -36281263 + B1F1 SINE Alu 3 115 -34 5 1448 545 272 64 1 chr6 113236130 113236283 -36280754 - ID_B1 SINE B4 0 224 68 5 1448 188 135 27 0 chr6 113236343 113236380 -36280657 + T-rich Low_complexity Low_complexity 2 39 0 5 1448 323 269 14 0 chr6 113236397 113236483 -36280554 + ID4_ SINE ID 12 98 -54 5 1448 287 320 160 0 chr6 113236701 113236801 -36280236 + RSINE1 SINE B4 1 116 -49 5 1448 299 256 66 11 chr6 113236841 113236932 -36280105 + PB1D10 SINE Alu 22 117 0 5 1448 476 239 123 0 chr6 113237117 113237247 -36279790 + B1F SINE Alu 4 149 0 5 1448 679 333 99 12 chr6 113237247 113237743 -36279294 - L2 LINE L2 -1699 1720 1182 5 1448 229 235 58 69 chr6 113237932 113238019 -36279018 - B1_Mus2 SINE Alu 0 147 62 6 1448 442 231 100 0 chr6 113238060 113238190 -36278847 - B1F SINE Alu -1 148 6 6 1448 456 264 8 31 chr6 113238074 113238203 -36278834 - ID_B1 SINE B4 -21 203 78 6 1448 248 254 41 59 chr6 113238208 113238313 -36278724 - B1_Mur4 SINE Alu -6 144 43 6 1448 359 368 6 52 chr6 113238396 113238568 -36278469 - RSINE1 SINE B4 0 165 2 6 1448 384 101 25 25 chr6 113238822 113238903 -36278134 + (TTTG)n Simple_repeat Simple_repeat 1 81 0 6 1448 543 167 0 0 chr6 113238903 113238993 -36278044 - B1_Mur4 SINE Alu 0 150 61 6 1448 717 197 15 0 chr6 113238993 113239130 -36277907 - B1F SINE Alu -10 139 1 6 1448 301 330 10 10 chr6 113239133 113239234 -36277803 - PB1D10 SINE Alu -2 115 15 6 1448 387 0 0 0 chr6 113239249 113239292 -36277745 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1448 375 23 0 0 chr6 113239456 113239500 -36277537 + (CGTG)n Simple_repeat Simple_repeat 1 44 0 6 1448 333 0 0 0 chr6 113240748 113240785 -36276252 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 6 1448 509 246 6 32 chr6 113241404 113241534 -36275503 + PB1D10 SINE Alu 3 120 0 6 1448 211 336 108 34 chr6 113241534 113241552 -36275485 + B4A SINE B4 88 246 -46 6 1448 287 306 72 124 chr6 113241561 113241811 -36275226 + MIR SINE MIR 8 244 -18 6 1448 219 69 0 0 chr6 113241818 113241847 -36275190 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1448 206 143 0 28 chr6 113245444 113245480 -36271557 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1448 648 218 0 8 chr6 113245481 113245615 -36271422 - ID_B1 SINE B4 -1 223 91 6 1448 335 95 127 0 chr6 113245625 113245688 -36271349 - ORR1C2 LTR MaLR 0 384 314 6 1448 1167 68 0 0 chr6 113245688 113245836 -36271201 + B1_Mus1 SINE Alu 1 148 0 6 1448 742 161 20 0 chr6 113245836 113245985 -36271052 + GA-rich Low_complexity Low_complexity 2 153 0 6 1448 1408 161 82 57 chr6 113245985 113245998 -36271039 - ORR1C2 LTR MaLR -58 326 314 6 1448 390 233 34 17 chr6 113245998 113246116 -36270921 + PB1D9 SINE Alu 1 120 0 6 22 1408 161 82 57 chr6 113246116 113246419 -36270618 - ORR1C2 LTR MaLR -71 313 2 6 1449 573 150 145 30 chr6 113246468 113246599 -36270438 - B1_Mur4 SINE Alu 0 150 5 6 1449 1006 94 139 17 chr6 113246689 113246862 -36270175 - B2_Mm2 SINE B2 -1 194 1 6 1449 617 138 172 0 chr6 113246863 113246979 -36270058 - B1_Mur3 SINE Alu -13 136 1 6 1449 275 297 16 119 chr6 113246987 113247113 -36269924 - PB1D10 SINE Alu 0 117 5 6 1449 304 173 19 0 chr6 113247325 113247377 -36269660 + PB1D9 SINE Alu 1 53 -67 6 1449 195 69 0 0 chr6 113247377 113247406 -36269631 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 6 1449 1148 68 0 7 chr6 113247558 113247707 -36269330 - B1_Mus1 SINE Alu 0 148 1 6 1449 785 204 14 0 chr6 113247748 113247895 -36269142 + B1F2 SINE Alu 1 149 0 6 1449 384 250 155 28 chr6 113248123 113248304 -36268733 - ID_B1 SINE B4 -16 208 5 6 1449 316 343 134 0 chr6 113248320 113248492 -36268545 + MIR SINE MIR 68 262 0 6 1449 374 333 40 8 chr6 113248523 113248647 -36268390 - L2b LINE L2 -26 3349 3222 6 1449 389 310 55 60 chr6 113248658 113248857 -36268180 - Charlie16a DNA MER1_type 0 342 145 6 1449 430 219 18 19 chr6 113249251 113249363 -36267674 + B1F SINE Alu 1 119 -30 6 1449 264 59 0 0 chr6 113249448 113249482 -36267555 + (TATG)n Simple_repeat Simple_repeat 4 37 0 6 1449 527 170 32 0 chr6 113249498 113249592 -36267445 + B1_Mur1 SINE Alu 47 143 -6 6 1449 261 371 17 0 chr6 113249903 113250019 -36267018 + Charlie5 DNA MER1_type 1 118 -2506 6 1449 302 0 26 0 chr6 113250032 113250070 -36266967 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1449 342 267 0 11 chr6 113250840 113250931 -36266106 - LTR40a LTR ERVL -253 266 177 6 1449 453 226 118 15 chr6 113250946 113251081 -36265956 - B1F SINE Alu 0 149 1 6 1449 449 220 17 14 chr6 113251082 113251200 -36265837 - B1F2 SINE Alu -21 128 13 6 1449 518 287 21 0 chr6 113251246 113251389 -36265648 - B1F1 SINE Alu -2 147 2 6 1449 254 216 0 19 chr6 113251421 113251473 -36265564 + PB1D7 SINE Alu 70 120 0 6 1449 255 302 135 0 chr6 113252254 113252350 -36264687 - PB1D10 SINE Alu -8 109 1 6 1449 392 216 175 10 chr6 113252691 113252794 -36264243 - B1F SINE Alu -2 147 28 6 1449 667 210 87 0 chr6 113252971 113253109 -36263928 + ID_B1 SINE B4 8 157 -67 6 1449 266 238 48 0 chr6 113253053 113253116 -36263921 + B1F2 SINE Alu 21 86 -63 6 1449 315 0 0 0 chr6 113253123 113253158 -36263879 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1449 236 175 35 0 chr6 113253398 113253455 -36263582 + (TATG)n Simple_repeat Simple_repeat 4 62 0 6 1449 454 220 29 48 chr6 113253457 113253562 -36263475 + PB1D10 SINE Alu 15 117 0 6 1449 479 211 67 0 chr6 113253987 113254091 -36262946 + B1_Mur2 SINE Alu 19 129 -20 6 1449 305 296 0 47 chr6 113254185 113254270 -36262767 + ID4_ SINE ID 2 82 -1 6 1449 1172 108 11 0 chr6 113254984 113255160 -36261877 + B2_Mm1t SINE B2 2 179 -14 6 1449 473 146 152 16 chr6 113255207 113255332 -36261705 + B2_Mm2 SINE B2 47 188 -7 6 1449 249 263 9 66 chr6 113255317 113255423 -36261614 + Charlie4z DNA MER1_type 58 157 -10 6 1449 211 263 0 17 chr6 113255464 113255522 -36261515 + PB1D10 SINE Alu 59 115 -2 6 1449 353 234 0 105 chr6 113255642 113255747 -36261290 - PB1D10 SINE Alu -2 115 22 6 1449 341 277 21 55 chr6 113255772 113255917 -36261120 - MIR SINE MIR -1 261 122 6 1449 186 224 0 0 chr6 113257176 113257225 -36259812 + (CCG)n Simple_repeat Simple_repeat 2 50 0 6 1449 22 0 0 0 chr6 113257517 113257539 -36259498 + GC_rich Low_complexity Low_complexity 1 22 0 6 1449 181 255 0 0 chr6 113258424 113258471 -36258566 + L2b LINE L2 3329 3375 0 6 1449 1167 15 0 0 chr6 113258942 113259079 -36257958 + B1_Mus2 SINE Alu 2 138 -9 6 1449 188 326 0 0 chr6 113259091 113259140 -36257897 - L2c LINE L2 -246 3141 3093 6 1449 234 333 22 73 chr6 113259494 113259630 -36257407 - L2c LINE L2 -546 2873 2745 6 1449 189 0 0 0 chr6 113261091 113261112 -36255925 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1449 307 372 12 60 chr6 113261210 113261376 -36255661 - RSINE1 SINE B4 -4 161 4 6 1449 216 86 0 0 chr6 113261482 113261517 -36255520 + (C)n Simple_repeat Simple_repeat 1 35 0 6 1449 282 29 0 0 chr6 113261726 113261761 -36255276 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1449 542 252 150 27 chr6 113262952 113263172 -36253865 - MIR SINE MIR 0 262 16 6 1449 789 221 45 99 chr6 113263269 113263490 -36253547 - ID_B1 SINE B4 -15 209 1 6 1449 196 269 39 0 chr6 113264000 113264052 -36252985 + MIRb SINE MIR 214 267 -1 6 1449 243 238 46 31 chr6 113265823 113265888 -36251149 + ID4_ SINE ID 18 83 0 6 1449 480 258 75 8 chr6 113266292 113266425 -36250612 - ID_B1 SINE B4 -3 221 80 6 1449 192 224 41 0 chr6 113266874 113266923 -36250114 - L2b LINE L2 -1 3374 3324 6 1449 413 245 20 0 chr6 113268167 113268269 -36248768 - MIRc SINE MIR -109 159 56 6 1449 194 277 0 0 chr6 113270052 113270099 -36246938 - MIR3 SINE MIR -51 157 111 6 1449 189 0 0 0 chr6 113270533 113270554 -36246483 + (CAG)n Simple_repeat Simple_repeat 1 21 0 6 1449 754 196 97 12 chr6 113270840 113271005 -36246032 + B3 SINE B2 29 207 -9 6 1449 1112 62 0 7 chr6 113271059 113271206 -36245831 + B1_Mus2 SINE Alu 2 147 0 6 1449 225 0 0 0 chr6 113271209 113271234 -36245803 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1449 462 250 67 0 chr6 113271296 113271400 -36245637 + B1F SINE Alu 1 111 -38 6 1449 284 286 26 0 chr6 113271407 113271484 -36245553 + ID4 SINE ID 2 80 -3 6 1449 222 118 0 0 chr6 113274696 113274730 -36242307 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1449 347 272 0 37 chr6 113274991 113275098 -36241939 + PB1D10 SINE Alu 9 111 -6 6 1449 407 311 98 29 chr6 113275236 113275441 -36241596 - MIRb SINE MIR -35 233 15 6 1449 186 43 0 0 chr6 113275929 113275952 -36241085 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 6 1449 1077 61 0 26 chr6 113275957 113276109 -36240928 - B1_Mus1 SINE Alu 0 148 1 6 1449 418 222 18 27 chr6 113276488 113276599 -36240438 - PB1D10 SINE Alu -6 111 2 6 1449 311 213 13 26 chr6 113277560 113277637 -36239400 + ID4_ SINE ID 1 76 -7 6 1449 1281 28 0 0 chr6 113277667 113277811 -36239226 + B1_Mm SINE Alu 3 146 -1 6 1449 1217 110 6 0 chr6 113277852 113278007 -36239030 + B2_Mm2 SINE B2 3 157 -38 6 1449 234 0 0 0 chr6 113278007 113278033 -36239004 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 6 1449 1217 110 6 0 chr6 113278033 113278050 -36238987 + B2_Mm2 SINE B2 158 175 -20 6 1449 1192 54 0 13 chr6 113278061 113278210 -36238827 + B1_Mus1 SINE Alu 1 147 -1 6 1449 182 288 16 63 chr6 113279675 113279738 -36237299 + MIR SINE MIR 18 77 -185 6 1449 186 380 61 9 chr6 113280017 113280131 -36236906 + MIRc SINE MIR 36 155 -113 6 1449 1299 92 33 0 chr6 113280199 113280383 -36236654 + B2_Mm1a SINE B2 2 191 -2 6 1449 1976 126 3 128 chr6 113280486 113280860 -36236177 - ORR1A4 LTR MaLR 0 329 3 6 1449 910 254 9 9 chr6 113280999 113281214 -36235823 - B3 SINE B2 0 216 2 6 1449 422 288 76 0 chr6 113281323 113281455 -36235582 - B4A SINE B4 -149 143 2 6 1449 528 16 0 0 chr6 113282250 113282311 -36234726 + (TTCTC)n Simple_repeat Simple_repeat 1 61 0 6 1449 21 36 0 0 chr6 113282367 113282395 -36234642 + AT_rich Low_complexity Low_complexity 1 28 0 7 1449 574 26 0 61 chr6 113282440 113282522 -36234515 - B1_Mus2 SINE Alu 0 147 71 7 1449 874 239 6 28 chr6 113282549 113282730 -36234307 + B3A SINE B2 1 177 -21 7 1449 455 221 0 0 chr6 113282736 113282813 -36234224 - B3 SINE B2 -113 103 27 7 1449 1518 50 0 6 chr6 113282824 113283005 -36234032 - B2_Mm1t SINE B2 -13 180 1 7 1449 258 253 126 0 chr6 113283061 113283148 -36233889 + MIRb SINE MIR 88 185 -83 7 1449 223 260 157 37 chr6 113284784 113284892 -36232145 - MIR SINE MIR -5 257 137 7 1449 260 93 0 85 chr6 113284914 113284961 -36232076 - B1F2 SINE Alu -96 53 11 7 1449 411 144 294 22 chr6 113284980 113285072 -36231965 - PB1D9 SINE Alu -3 117 1 7 1449 584 263 7 55 chr6 113285132 113285277 -36231760 - ID_B1 SINE B4 -83 141 4 7 1449 248 29 0 29 chr6 113285321 113285356 -36231681 - PB1D7 SINE Alu -59 61 28 7 1449 248 184 0 39 chr6 113285358 113285409 -36231628 - MIR SINE MIR -120 142 94 7 1449 1622 42 0 5 chr6 113286710 113286903 -36230134 + B2_Mm1t SINE B2 1 192 -1 7 1449 240 35 0 0 chr6 113286906 113286935 -36230102 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1449 432 320 229 14 chr6 113287402 113287760 -36229277 + L2a LINE L2 2959 3393 -33 7 1449 1228 182 9 14 chr6 113287792 113288009 -36229028 - B3 SINE B2 0 216 1 7 1449 21 0 0 0 chr6 113288597 113288618 -36228419 + AT_rich Low_complexity Low_complexity 1 21 0 7 1449 274 328 52 30 chr6 113288657 113288792 -36228245 - MIRc SINE MIR -84 184 47 7 1449 615 173 19 0 chr6 113288809 113288913 -36228124 - B1_Mus2 SINE Alu 0 147 42 7 1449 355 167 188 26 chr6 113288856 113288973 -36228064 - RLTR25B LTR ERVK -530 498 363 7 1449 184 241 45 57 chr6 113289702 113289790 -36227247 + MIRc SINE MIR 26 112 -156 7 1449 250 257 27 0 chr6 113289826 113289900 -36227137 + MIRc SINE MIR 61 136 -132 7 1449 491 208 10 10 chr6 113290609 113290706 -36226331 + MLT1K LTR MaLR 315 411 -184 7 1449 676 193 259 0 chr6 113290920 113291086 -36225951 - B3 SINE B2 -7 209 1 7 1449 332 345 170 11 chr6 113291238 113291508 -36225529 + L2c LINE L2 3030 3342 -45 7 1449 492 48 0 0 chr6 113292304 113292367 -36224670 + (TCC)n Simple_repeat Simple_repeat 3 65 0 7 1449 231 322 84 8 chr6 113294869 113294988 -36222049 + MIRb SINE MIR 115 242 -26 7 1449 221 239 66 66 chr6 113294992 113295068 -36221969 + B1_Mus1 SINE Alu 10 85 -63 7 1449 613 274 195 17 chr6 113295118 113295359 -36221678 + B4A SINE B4 9 292 0 7 1449 740 257 48 19 chr6 113295660 113295870 -36221167 - B3 SINE B2 0 216 1 7 1449 432 0 0 0 chr6 113295956 113296004 -36221033 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1449 333 0 0 0 chr6 113296004 113296040 -36220997 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 1449 282 232 0 0 chr6 113296048 113296212 -36220825 + (TG)n Simple_repeat Simple_repeat 1 164 0 7 1449 507 296 6 74 chr6 113296236 113296411 -36220626 - RSINE1 SINE B4 0 165 3 7 1449 1273 63 29 73 chr6 113296453 113296477 -36220560 - B2_Mm2 SINE B2 0 195 170 7 1449 1183 57 6 0 chr6 113296477 113296634 -36220403 - L1Md_F2 LINE L1 -1 6581 6424 7 1449 243 0 0 0 chr6 113296640 113296667 -36220370 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1449 1204 76 0 0 chr6 113296667 113296812 -36220225 - B1_Mus2 SINE Alu -2 145 1 7 1449 216 0 0 0 chr6 113296815 113296839 -36220198 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 1449 1273 63 29 73 chr6 113296839 113297006 -36220031 - B2_Mm2 SINE B2 -29 166 4 7 1449 579 234 8 8 chr6 113297010 113297139 -36219898 - ID_B1 SINE B4 -1 223 95 7 1449 486 0 0 0 chr6 113297348 113297402 -36219635 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1449 288 0 0 0 chr6 113297402 113297434 -36219603 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1449 245 283 0 0 chr6 113297700 113297752 -36219285 + polypyrimidine Low_complexity Low_complexity 12 63 0 7 1449 320 265 0 0 chr6 113297752 113297820 -36219217 - ID4 SINE ID -13 70 3 7 1449 198 0 0 0 chr6 113297906 113297928 -36219109 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1449 1256 54 0 0 chr6 113297969 113298117 -36218920 + B1_Mus1 SINE Alu 1 148 0 7 1449 472 305 48 0 chr6 113298224 113298329 -36218708 + PB1D7 SINE Alu 6 115 -5 7 1449 249 108 0 0 chr6 113298330 113298367 -36218670 + (GGA)n Simple_repeat Simple_repeat 3 39 0 7 1449 349 234 42 11 chr6 113298522 113298617 -36218420 - HAL1-3A_ME LINE L1 -789 2069 1972 7 1449 929 139 14 0 chr6 113298645 113298789 -36218248 - MTB_Mm LTR MaLR -261 146 1 7 1449 525 219 4 17 chr6 113298812 113299049 -36217988 + (CA)n Simple_repeat Simple_repeat 1 233 0 7 1449 2438 105 59 18 chr6 113299058 113299447 -36217590 + MTB_Mm LTR MaLR 3 407 0 7 1449 687 196 51 0 chr6 113299535 113299673 -36217364 - B4A SINE B4 0 292 148 7 1449 328 260 14 109 chr6 113300093 113300231 -36216806 + PB1 SINE Alu 1 125 -2 7 1449 298 265 44 0 chr6 113300237 113300305 -36216732 + ID4_ SINE ID 5 75 -8 7 1449 231 383 12 12 chr6 113300316 113300398 -36216639 + ID_B1 SINE B4 66 147 -77 7 1449 629 239 44 94 chr6 113300416 113300619 -36216418 - B3A SINE B2 0 198 6 7 1449 343 191 58 14 chr6 113300785 113300854 -36216183 - RSINE1 SINE B4 -203 89 18 7 1449 303 49 0 0 chr6 113300855 113300896 -36216141 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1449 1507 37 16 11 chr6 113300903 113301094 -36215943 - B2_Mm1t SINE B2 -1 192 1 7 1449 301 216 12 108 chr6 113301098 113301181 -36215856 - B1F SINE Alu 0 149 75 7 1449 598 281 14 0 chr6 113301257 113301396 -36215641 + B1F SINE Alu 1 141 -8 7 1449 862 247 12 7 chr6 113301951 113302172 -36214865 - B3A SINE B2 0 216 1 7 1449 1217 90 0 6 chr6 113302206 113302384 -36214653 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 7 1449 189 0 0 0 chr6 113302386 113302407 -36214630 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 7 1449 2063 144 195 11 chr6 113302792 113303233 -36213804 + RLTR11A LTR ERVK 7 528 0 7 1449 1301 103 16 21 chr6 113304092 113304135 -36212902 - B2_Mm2 SINE B2 -6 189 146 7 1449 675 0 0 0 chr6 113304135 113304210 -36212827 + (TC)n Simple_repeat Simple_repeat 2 76 0 7 1449 1283 47 0 0 chr6 113304210 113304358 -36212679 - B1_Mus1 SINE Alu 0 148 1 7 1449 1301 103 16 21 chr6 113304358 113304502 -36212535 - B2_Mm2 SINE B2 -50 145 3 7 1449 903 161 0 0 chr6 113304728 113304889 -36212148 + CT-rich Low_complexity Low_complexity 4 164 0 7 1449 647 189 115 0 chr6 113304890 113305012 -36212025 - B1_Mur3 SINE Alu -5 144 9 7 1449 1855 152 104 14 chr6 113305235 113305581 -36211456 - ORR1C2 LTR MaLR -7 377 1 7 1449 2267 148 62 0 chr6 113305634 113305914 -36211123 - ORR1B1 LTR MaLR 0 394 100 7 1449 1057 59 80 7 chr6 113305914 113306051 -36210986 - B1_Mus2 SINE Alu 0 147 1 7 1449 2267 148 62 0 chr6 113306051 113306141 -36210896 - ORR1B1 LTR MaLR -295 99 2 7 1449 2019 112 36 101 chr6 113306240 113306434 -36210603 + RMER17C LTR ERVK 1 184 -226 7 1449 1001 144 6 0 chr6 113306434 113306608 -36210429 + (TCC)n Simple_repeat Simple_repeat 3 177 0 7 1449 2019 112 36 101 chr6 113306608 113306851 -36210186 + RMER17C LTR ERVK 185 410 0 7 1449 537 277 78 0 chr6 113306922 113307063 -36209974 - RSINE1 SINE B4 -12 153 2 7 1449 378 167 45 0 chr6 113307201 113307267 -36209770 + B3A SINE B2 1 69 -129 7 1449 409 264 187 42 chr6 113307258 113307424 -36209613 - ID_B1 SINE B4 -34 190 1 7 1449 641 173 10 0 chr6 113307443 113307547 -36209490 + B1_Mur1 SINE Alu 23 127 -22 7 1449 405 0 0 0 chr6 113307547 113307592 -36209445 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1449 495 0 0 0 chr6 113307592 113307646 -36209391 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1449 916 116 13 39 chr6 113307896 113307923 -36209114 - B1_Mur4 SINE Alu -1 149 128 7 1449 298 0 48 0 chr6 113307923 113307965 -36209072 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1449 969 72 0 0 chr6 113307965 113308090 -36208947 - B1_Mus1 SINE Alu -23 125 1 7 1449 189 107 0 0 chr6 113308096 113308124 -36208913 + (TTTCG)n Simple_repeat Simple_repeat 3 30 0 7 1449 783 132 5 16 chr6 113308124 113308258 -36208779 - B1_Mus2 SINE Alu -9 140 1 7 1449 598 261 70 11 chr6 113308258 113308426 -36208611 - ID_B1 SINE B4 -38 186 7 7 1449 650 179 70 63 chr6 113309046 113309189 -36207848 + B1_Mus1 SINE Alu 4 147 -1 7 1449 1103 95 0 0 chr6 113309203 113309350 -36207687 - B1_Mus2 SINE Alu 0 147 1 7 1449 289 226 81 0 chr6 113309243 113309367 -36207670 - ORR1B1-int LTR MaLR -755 754 621 7 1449 570 305 31 21 chr6 113309395 113309586 -36207451 - B3A SINE B2 0 198 6 7 1449 481 273 94 28 chr6 113309571 113309752 -36207285 - B4A SINE B4 -76 216 24 7 1449 1466 52 15 20 chr6 113309768 113309964 -36207073 - B2_Mm2 SINE B2 0 195 1 7 1449 726 239 0 0 chr6 113309973 113310111 -36206926 - B1F SINE Alu -7 142 5 7 1449 201 74 0 0 chr6 113310125 113310152 -36206885 + (TCCA)n Simple_repeat Simple_repeat 2 28 0 7 1449 451 252 42 30 chr6 113310163 113310301 -36206736 - PB1 SINE Alu -1 148 9 7 1449 369 246 57 48 chr6 113310366 113310490 -36206547 - MER5A DNA MER1_type -50 139 15 7 1449 687 25 0 0 chr6 113310494 113310575 -36206462 + (TG)n Simple_repeat Simple_repeat 1 81 0 7 1449 800 208 36 62 chr6 113311573 113311768 -36205269 - B3 SINE B2 0 216 27 7 1449 558 153 252 7 chr6 113311764 113311915 -36205122 - B2_Mm1t SINE B2 -5 188 1 7 1449 1186 48 0 14 chr6 113311944 113312091 -36204946 + B1_Mus2 SINE Alu 2 146 -1 7 1449 279 276 76 60 chr6 113312154 113312336 -36204701 + L2c LINE L2 2921 3105 -321 8 1449 549 80 0 0 chr6 113312855 113312930 -36204107 + (TA)n Simple_repeat Simple_repeat 2 76 0 8 1449 1157 96 90 0 chr6 113312930 113313097 -36203940 - B2_Mm2 SINE B2 -13 182 1 8 1449 727 228 82 24 chr6 113313245 113313452 -36203585 + ID_B1 SINE B4 3 221 -3 8 1449 826 267 6 6 chr6 113313459 113313640 -36203397 + B3A SINE B2 2 182 -16 8 1449 196 216 103 51 chr6 113313803 113313881 -36203156 - L2 LINE L2 -3105 314 233 8 1449 313 283 111 37 chr6 113314206 113314358 -36202679 + MIRb SINE MIR 10 167 -95 8 1449 376 312 8 53 chr6 113314603 113314735 -36202302 - MLT1K LTR MaLR -3 592 467 8 1449 370 314 63 14 chr6 113314865 113314878 -36202159 - B1F SINE Alu 0 149 5 8 1449 485 266 24 8 chr6 113314878 113315003 -36202034 - ID_B1 SINE B4 -12 212 86 8 1449 437 257 28 37 chr6 113315022 113315131 -36201906 - ID_B1 SINE B4 -7 217 110 8 1449 435 215 121 19 chr6 113315318 113315421 -36201616 - PB1D10 SINE Alu 0 117 6 8 1449 327 260 0 52 chr6 113315691 113315768 -36201269 + B1F SINE Alu 13 85 -64 8 1449 592 165 0 10 chr6 113315813 113315917 -36201120 - URR1B DNA MER1_type 0 225 123 8 1449 692 164 117 22 chr6 113316073 113316210 -36200827 - URR1B DNA MER1_type -76 149 1 8 1449 429 310 26 52 chr6 113317489 113317642 -36199395 - B1F SINE Alu 0 149 1 8 1449 825 171 50 0 chr6 113317660 113317800 -36199237 + B1_Mus2 SINE Alu 1 147 0 8 1449 244 111 0 77 chr6 113317800 113317878 -36199159 + A-rich Low_complexity Low_complexity 1 72 0 8 1449 751 246 115 21 chr6 113317909 113318100 -36198937 + B3 SINE B2 1 209 -7 8 1449 235 219 215 11 chr6 113318122 113318210 -36198827 - MIRb SINE MIR -40 228 118 8 1449 224 315 70 2 chr6 113318632 113318732 -36198305 + MIRm SINE MIR 42 153 -123 8 1449 714 264 0 0 chr6 113319412 113319556 -36197481 - RSINE1 SINE B4 -20 145 2 8 1449 558 271 43 43 chr6 113319556 113319771 -36197266 - B4A SINE B4 -69 223 9 8 1449 564 224 124 17 chr6 113319889 113320066 -36196971 + B3A SINE B2 3 198 0 8 1449 228 67 0 0 chr6 113320172 113320202 -36196835 + (GCGTG)n Simple_repeat Simple_repeat 4 33 0 8 1449 291 295 138 81 chr6 113321371 113321581 -36195456 + MLT1J1 LTR MaLR 59 280 -164 8 1449 290 286 78 48 chr6 113321712 113321815 -36195222 + MIRc SINE MIR 30 135 -133 8 1449 230 291 135 10 chr6 113321889 113321993 -36195044 + PB1D10 SINE Alu 1 117 0 8 1449 624 62 0 0 chr6 113322023 113322104 -36194933 + (TG)n Simple_repeat Simple_repeat 1 81 0 8 1449 347 206 171 29 chr6 113322137 113322242 -36194795 - PB1D9 SINE Alu 0 120 1 8 1449 227 241 187 44 chr6 113322826 113322917 -36194120 + PB1D10 SINE Alu 1 104 -13 8 1449 186 43 0 0 chr6 113322922 113322945 -36194092 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 8 1449 238 214 34 51 chr6 113322991 113323003 -36194034 + B4 SINE B4 77 134 -158 8 1449 273 170 43 0 chr6 113323003 113323050 -36193987 + PB1D9 SINE Alu 1 49 -71 8 1449 317 214 0 79 chr6 113323289 113323365 -36193672 - tRNA-Ala-GCY_ tRNA tRNA 0 75 6 8 1449 290 266 0 0 chr6 113323309 113323373 -36193664 - BC1_Mm scRNA scRNA -85 67 4 8 1449 262 194 204 48 chr6 113323467 113323570 -36193467 - PB1D7 SINE Alu -1 119 1 8 1449 661 285 28 9 chr6 113323946 113324162 -36192875 + ID_B1 SINE B4 4 223 -1 8 1449 204 49 47 47 chr6 113324165 113324208 -36192829 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 1449 420 209 0 113 chr6 113324244 113324368 -36192669 + PB1 SINE Alu 17 126 -1 8 1449 1220 48 0 7 chr6 113324384 113324531 -36192506 - B1_Mus2 SINE Alu 0 147 2 8 1449 288 0 0 0 chr6 113326206 113326238 -36190799 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 8 1449 666 165 97 24 chr6 113326238 113326362 -36190675 - B1_Mus1 SINE Alu -15 133 1 8 1449 355 216 88 184 chr6 113326515 113326651 -36190386 - B1_Mur1 SINE Alu -12 137 15 8 1449 371 223 266 0 chr6 113326645 113326739 -36190298 - ID_B1 SINE B4 -25 199 81 8 1449 322 280 0 13 chr6 113326829 113326905 -36190132 - PB1D10 SINE Alu -42 75 1 8 1449 207 0 0 0 chr6 113327195 113327218 -36189819 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1449 430 224 16 57 chr6 113327276 113327399 -36189638 + MIRb SINE MIR 138 255 -13 8 1449 359 346 77 0 chr6 113330393 113330549 -36186488 - MER20 DNA MER1_type -50 169 2 8 1449 428 228 43 1 chr6 113331313 113331423 -36185614 + PB1D7 SINE Alu 5 120 0 8 1449 296 274 0 18 chr6 113331482 113331559 -36185478 - ID4_ SINE ID -9 74 1 8 1449 1332 86 48 0 chr6 113331669 113331855 -36185182 - B2_Mm2 SINE B2 0 195 1 8 1449 501 223 44 18 chr6 113332166 113332280 -36184757 + PB1D10 SINE Alu 1 117 0 8 1449 345 283 129 58 chr6 113332437 113332658 -36184379 + L1M4b LINE L1 2032 2417 -4609 8 1449 1213 62 0 0 chr6 113332714 113332860 -36184177 - B1_Mus2 SINE Alu 0 147 2 8 1449 684 299 40 0 chr6 113332872 113333123 -36183914 - L1M4 LINE L1 -1099 5047 4787 8 1449 835 92 0 0 chr6 113333140 113333259 -36183778 + B1_Mus1 SINE Alu 30 148 0 8 1449 339 130 0 0 chr6 113333286 113333340 -36183697 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 8 1449 238 308 150 29 chr6 113333409 113333616 -36183421 - MER113 DNA MER1_type -43 478 247 8 1449 211 241 152 0 chr6 113334502 113334581 -36182456 + PB1 SINE Alu 6 96 -31 8 1449 1201 123 37 0 chr6 113335055 113335242 -36181795 - B2_Mm2 SINE B2 0 195 2 8 1449 676 179 43 7 chr6 113336716 113336857 -36180180 - B1_Mus2 SINE Alu 0 147 2 8 1449 28 29 0 0 chr6 113336878 113336913 -36180124 + AT_rich Low_complexity Low_complexity 1 35 0 8 1449 466 277 0 16 chr6 113336964 113337085 -36179952 - PB1D7 SINE Alu -1 119 1 8 1449 383 56 19 0 chr6 113337148 113337202 -36179835 + (TGAA)n Simple_repeat Simple_repeat 3 57 0 8 1449 369 278 141 34 chr6 113337351 113337367 -36179670 - B3A SINE B2 -33 165 151 8 1449 183 42 0 0 chr6 113337367 113337391 -36179646 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 8 1449 369 278 141 34 chr6 113337391 113337523 -36179514 - B3A SINE B2 -48 150 1 8 1449 407 282 51 8 chr6 113338217 113338335 -36178702 - ID_B1 SINE B4 -13 211 89 8 1449 272 254 0 0 chr6 113338604 113338663 -36178374 + B3A SINE B2 9 67 -131 8 1449 361 226 96 19 chr6 113340323 113340427 -36176610 + PB1D10 SINE Alu 1 112 -5 8 1449 274 239 60 0 chr6 113340502 113340569 -36176468 - ID4_ SINE ID -10 73 3 8 1449 215 288 36 48 chr6 113341158 113341242 -36175795 + B1F SINE Alu 58 140 -9 8 1449 354 216 324 0 chr6 113341623 113341725 -36175312 + B1_Mus2 SINE Alu 6 140 -7 8 1449 279 0 0 0 chr6 113341942 113341973 -36175064 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 8 1449 1081 66 0 0 chr6 113341973 113342109 -36174928 - B1_Mus1 SINE Alu -12 136 1 8 1449 210 71 0 0 chr6 113343203 113343231 -36173806 + (TGG)n Simple_repeat Simple_repeat 3 30 0 8 1449 307 266 51 0 chr6 113344310 113344389 -36172648 + ID4_ SINE ID 1 83 0 8 1449 234 238 16 16 chr6 113344397 113344461 -36172576 + MIR SINE MIR 58 121 -141 8 1449 209 289 80 30 chr6 113344541 113344641 -36172396 + L2a LINE L2 3258 3362 -64 8 1449 656 241 17 22 chr6 113345416 113345594 -36171443 + B4 SINE B4 52 228 -64 8 1449 897 199 72 0 chr6 113345593 113345774 -36171263 + B3 SINE B2 23 216 0 8 1449 423 56 0 0 chr6 113345849 113345903 -36171134 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1449 569 116 0 0 chr6 113346057 113346143 -36170894 + B1_Mus1 SINE Alu 2 87 -61 8 1449 231 242 215 22 chr6 113346216 113346351 -36170686 - RSINE1 SINE B4 0 165 5 8 1449 413 240 73 0 chr6 113346359 113346455 -36170582 - MTE2a LTR MaLR -9 370 268 8 1449 471 175 195 62 chr6 113346457 113346585 -36170452 + B1_Mus1 SINE Alu 3 147 -1 8 1449 1131 55 7 0 chr6 113346620 113346766 -36170271 + B1_Mus1 SINE Alu 1 147 -1 8 1449 417 242 0 48 chr6 113346778 113346882 -36170155 - PB1D10 SINE Alu -14 103 5 8 1449 343 0 43 0 chr6 113347062 113347109 -36169928 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 8 1449 657 208 0 0 chr6 113347110 113347240 -36169797 - B1_Mus2 SINE Alu -13 134 5 8 1449 464 284 23 32 chr6 113347265 113347292 -36169745 + ID_B1 SINE B4 82 174 -118 8 1449 571 197 34 0 chr6 113347292 113347409 -36169628 + B1F SINE Alu 23 143 -6 8 1449 464 284 23 32 chr6 113347409 113347425 -36169612 + ID_B1 SINE B4 175 238 -54 8 1449 429 208 83 0 chr6 113347648 113347744 -36169293 - MTE2a LTR MaLR -8 371 268 8 1449 700 177 33 20 chr6 113348430 113348580 -36168457 + URR1A DNA MER1_type 75 226 0 8 1449 304 215 124 51 chr6 113349302 113349439 -36167598 + B1_Mur2 SINE Alu 2 148 -1 8 1449 180 0 0 0 chr6 113351960 113351980 -36165057 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1449 1165 34 7 0 chr6 113351981 113352127 -36164910 - B1_Mus2 SINE Alu 0 147 1 8 1449 241 250 65 13 chr6 113352611 113352688 -36164349 - ID4 SINE ID -2 81 1 8 1449 235 265 121 10 chr6 113352715 113352814 -36164223 - RSINE1 SINE B4 -11 154 45 8 1449 387 0 0 0 chr6 113352814 113352857 -36164180 + (TC)n Simple_repeat Simple_repeat 2 44 0 8 1449 457 144 52 36 chr6 113352857 113353051 -36163986 - RMER17C LTR ERVK -136 274 78 8 1449 647 160 136 0 chr6 113353066 113353191 -36163846 - B1_Mus1 SINE Alu -6 142 1 9 1449 376 220 12 35 chr6 113353320 113353405 -36163632 + PB1D10 SINE Alu 31 113 -4 9 1449 1232 92 0 32 chr6 113353480 113353670 -36163367 - B2_Mm2 SINE B2 -8 187 4 9 1449 819 121 0 0 chr6 113353712 113353836 -36163201 + B1_Mus2 SINE Alu 24 147 0 9 1449 596 279 68 29 chr6 113353860 113354067 -36162970 + B3 SINE B2 2 216 0 9 1449 202 272 75 50 chr6 113354573 113354693 -36162344 - L2b LINE L2 -3 3372 3250 9 1449 229 373 54 12 chr6 113354925 113355093 -36161944 + MIRb SINE MIR 71 245 -23 9 1449 436 245 0 10 chr6 113355520 113355619 -36161418 + MIRm SINE MIR 57 154 -122 9 1449 349 233 171 8 chr6 113356028 113356047 -36160990 + B1F SINE Alu 14 148 0 9 1449 377 258 41 0 chr6 113356047 113356144 -36160893 + ID_B1 SINE B4 124 224 0 9 1449 621 158 33 73 chr6 113356172 113356322 -36160715 + B1_Mur2 SINE Alu 1 144 -5 9 1449 435 222 0 0 chr6 113356674 113356755 -36160282 - RSINE1 SINE B4 -76 89 9 9 1449 275 253 0 37 chr6 113356683 113356757 -36160280 - B3A SINE B2 -119 79 8 9 1449 699 181 185 11 chr6 113356757 113356941 -36160096 - B3 SINE B2 0 216 1 9 1449 204 67 0 0 chr6 113357537 113357567 -36159470 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1449 197 250 100 0 chr6 113357606 113357666 -36159371 - L2a LINE L2 -58 3368 3303 9 1449 1017 154 144 0 chr6 113357704 113357899 -36159138 - URR1B DNA MER1_type -2 223 1 9 1449 215 270 22 86 chr6 113357997 113358091 -36158946 + MIR SINE MIR 37 131 -137 9 1449 523 209 0 25 chr6 113358091 113358209 -36158828 + PB1D10 SINE Alu 1 115 -2 9 1449 215 256 20 100 chr6 113358209 113358229 -36158808 + MIR SINE MIR 121 138 -124 9 1449 468 279 93 0 chr6 113358263 113358392 -36158645 + ID_B1 SINE B4 81 221 -3 9 1449 298 294 75 96 chr6 113358437 113358668 -36158369 - MIRb SINE MIR -26 242 8 9 1449 252 22 67 0 chr6 113359902 113359947 -36157090 + (TTG)n Simple_repeat Simple_repeat 1 48 0 9 1449 603 229 0 27 chr6 113359947 113360087 -36156950 - B1F SINE Alu -12 137 2 9 1449 561 224 26 8 chr6 113360315 113360432 -36156605 + B1F SINE Alu 29 147 -2 9 1449 931 165 58 16 chr6 113360593 113360784 -36156253 + URR1A DNA MER1_type 26 224 -2 9 1449 215 338 29 0 chr6 113360842 113360910 -36156127 - ID4_ SINE ID -9 74 5 9 1449 290 304 0 0 chr6 113360969 113361048 -36155989 + B1_Mur1 SINE Alu 68 146 -3 9 1449 602 210 76 0 chr6 113361133 113361252 -36155785 + ID_B1 SINE B4 97 224 0 9 1449 257 291 79 0 chr6 113361475 113361602 -36155435 - L1MC5 LINE L1 -534 7427 7291 9 1449 570 15 0 0 chr6 113361737 113361804 -36155233 + (TTA)n Simple_repeat Simple_repeat 3 69 0 9 1449 535 252 109 58 chr6 113361825 113361981 -36155056 - RSINE1 SINE B4 0 165 2 9 1449 381 265 78 73 chr6 113362012 113362244 -36154793 - CYRA11_Mm Unknown Y-chromosome -213 404 172 9 1449 1001 182 49 5 chr6 113362041 113362245 -36154792 + URR1B DNA MER1_type 13 225 0 9 1449 404 235 69 39 chr6 113362275 113362377 -36154660 + B3A SINE B2 2 106 -92 9 1449 709 224 54 6 chr6 113363563 113363729 -36153308 - MIRb SINE MIR -77 191 18 9 1449 302 264 16 120 chr6 113365096 113365221 -36151816 + MT2B LTR ERVL 154 265 -336 9 1449 521 160 19 19 chr6 113365116 113365224 -36151813 + PB1D9 SINE Alu 12 119 -1 9 1449 216 307 43 0 chr6 113365359 113365449 -36151588 - MIRm SINE MIR -141 127 34 9 1449 394 270 118 26 chr6 113365828 113365980 -36151057 + MLT1J2 LTR MaLR 42 207 -241 9 1449 815 162 83 12 chr6 113367461 113367630 -36149407 + B3 SINE B2 35 215 -1 9 1449 183 42 0 0 chr6 113368125 113368149 -36148888 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 9 1449 373 250 11 11 chr6 113368331 113368420 -36148617 - PB1D10 SINE Alu -23 94 6 9 1449 181 284 152 27 chr6 113369053 113369165 -36147872 - MIRm SINE MIR -128 148 23 9 1449 257 217 150 0 chr6 113369716 113369776 -36147261 + ID SINE ID 12 80 -144 9 1449 272 240 190 0 chr6 113369868 113369968 -36147069 + PB1D9 SINE Alu 2 120 0 9 1449 1081 66 0 0 chr6 113370079 113370216 -36146821 + B1_Mm SINE Alu 2 138 -9 9 1449 186 43 0 0 chr6 113370216 113370239 -36146798 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1449 1065 62 7 33 chr6 113370491 113370641 -36146396 - B1_Mm SINE Alu 0 147 2 9 1449 276 220 51 0 chr6 113370664 113370723 -36146314 + B1F2 SINE Alu 1 62 -87 9 1449 223 312 29 59 chr6 113370723 113370758 -36146279 + B4A SINE B4 97 179 -113 9 1449 232 250 51 26 chr6 113371063 113371141 -36145896 + MLT1A0 LTR MaLR 212 291 -74 9 1449 421 309 126 0 chr6 113371167 113371358 -36145679 - B3 SINE B2 0 216 2 9 1449 1158 48 0 0 chr6 113371929 113372076 -36144961 + B1_Mm SINE Alu 1 147 0 9 1449 378 0 0 0 chr6 113372187 113372229 -36144808 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1449 735 167 83 0 chr6 113372250 113372382 -36144655 - B1_Mus1 SINE Alu 0 148 6 9 1449 483 63 0 0 chr6 113372410 113372473 -36144564 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 9 1449 1246 81 40 0 chr6 113372540 113372713 -36144324 - B2_Mm2 SINE B2 -14 181 2 9 1449 350 208 82 11 chr6 113372729 113372821 -36144216 - RSINE1 SINE B4 -63 102 3 9 1449 829 192 91 5 chr6 113372845 113373044 -36143993 - B3 SINE B2 0 216 1 9 1449 522 238 0 38 chr6 113373078 113373209 -36143828 - B1F2 SINE Alu 0 149 24 9 1449 440 252 42 42 chr6 113373348 113373468 -36143569 + ID_B1 SINE B4 81 200 -24 9 1449 714 280 6 0 chr6 113373535 113373692 -36143345 + RSINE1 SINE B4 6 163 -2 9 1449 282 56 0 0 chr6 113374061 113374097 -36142940 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 9 1449 763 281 23 5 chr6 113374140 113374358 -36142679 + ID_B1 SINE B4 1 222 -2 9 1449 341 243 153 134 chr6 113374360 113374517 -36142520 + RSINE1 SINE B4 4 163 -2 9 1449 320 280 175 19 chr6 113374752 113374912 -36142125 - RMER15 LTR ERVL -68 507 323 9 1449 281 26 26 0 chr6 113375814 113375852 -36141185 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 9 1449 717 203 22 0 chr6 113375866 113376004 -36141033 - B1F SINE Alu 0 149 9 9 1449 310 292 49 111 chr6 113375869 113376031 -36141006 - B4 SINE B4 -69 223 72 9 1449 275 286 0 0 chr6 113376079 113376149 -36140888 - B1_Mus1 SINE Alu -68 80 11 9 1449 299 136 152 0 chr6 113376371 113376430 -36140607 - B1_Mur4 SINE Alu -6 144 77 9 1449 438 20 0 0 chr6 113376465 113376516 -36140521 + (TC)n Simple_repeat Simple_repeat 2 52 0 9 1449 459 246 67 7 chr6 113376601 113376736 -36140301 - B1F SINE Alu -5 144 2 9 1449 718 302 66 3 chr6 113376736 113377055 -36139982 + L1MB4 LINE L1 5834 6172 -8 9 1449 715 215 11 0 chr6 113377060 113377237 -36139800 + CT-rich Low_complexity Low_complexity 2 180 0 9 181 755 206 0 14 chr6 113377247 113377390 -36139647 - B1_Mur1 SINE Alu 0 149 9 9 1450 342 245 0 109 chr6 113377289 113377408 -36139629 - MT2B LTR ERVL -341 260 155 9 1450 385 250 179 0 chr6 113377477 113377617 -36139420 - B3A SINE B2 -28 170 6 9 1450 297 226 115 35 chr6 113377643 113377730 -36139307 - PB1D10 SINE Alu -1 116 23 9 1450 245 261 14 14 chr6 113377757 113377827 -36139210 + ID4_ SINE ID 4 73 -10 9 1450 391 268 37 52 chr6 113378647 113378781 -36138256 - B1F SINE Alu -12 137 6 9 1450 764 98 101 36 chr6 113378816 113378954 -36138083 - B1_Mur1 SINE Alu -1 148 2 9 1450 539 313 78 0 chr6 113378965 113379131 -36137906 - B3A SINE B2 -3 195 17 9 1450 487 271 22 36 chr6 113379194 113379332 -36137705 + B1F2 SINE Alu 11 146 -3 9 1450 573 198 0 0 chr6 113379339 113379460 -36137577 + GA-rich Low_complexity Low_complexity 1 121 0 9 1450 718 204 122 16 chr6 113379943 113380132 -36136905 - B3 SINE B2 -6 210 2 9 1450 594 234 22 14 chr6 113380247 113380386 -36136651 + RSINE1 SINE B4 5 144 -21 9 1450 270 56 0 0 chr6 113380719 113380755 -36136282 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1450 189 0 0 0 chr6 113380755 113380776 -36136261 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1450 241 227 119 40 chr6 113380912 113381013 -36136024 - YREP_Mm Unknown Unknown -1523 289 181 9 1450 480 248 53 23 chr6 113381036 113381168 -36135869 + B1F SINE Alu 1 136 -13 9 1450 524 277 65 7 chr6 113381223 113381361 -36135676 + RSINE1 SINE B4 5 150 -15 9 1450 450 0 0 0 chr6 113381364 113381414 -36135623 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1450 216 0 0 0 chr6 113381983 113382007 -36135030 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1450 234 0 0 0 chr6 113382511 113382537 -36134500 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1450 1128 68 0 0 chr6 113382769 113382915 -36134122 - B1_Mus1 SINE Alu 0 148 3 9 1450 296 326 64 14 chr6 113383337 113383477 -36133560 - MER5A1 DNA MER1_type -2 164 18 9 1450 224 360 73 18 chr6 113383641 113383805 -36133232 + MIRb SINE MIR 59 231 -37 9 1450 630 259 0 7 chr6 113383998 113384134 -36132903 - B1_Mur1 SINE Alu -7 142 8 9 1450 695 176 59 0 chr6 113384176 113384312 -36132725 - B1_Mur1 SINE Alu -1 148 5 9 1450 319 308 76 9 chr6 113385018 113385123 -36131914 + Charlie5 DNA MER1_type 2 113 -2511 1 1450 273 330 28 0 chr6 113386081 113386190 -36130847 + PB1D7 SINE Alu 1 112 -8 1 1450 1066 81 0 0 chr6 113386218 113386354 -36130683 + B1_Mus1 SINE Alu 2 137 -11 1 1450 183 42 0 0 chr6 113386354 113386378 -36130659 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1450 411 202 21 94 chr6 113386533 113386644 -36130393 + B1F SINE Alu 11 114 -6 1 1450 351 0 0 0 chr6 113386841 113386880 -36130157 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1450 766 237 30 0 chr6 113386916 113387085 -36129952 + B3 SINE B2 1 174 -42 1 1450 270 284 8 72 chr6 113387450 113387575 -36129462 + PB1D10 SINE Alu 1 117 0 1 1450 445 202 0 10 chr6 113387674 113387774 -36129263 + B1F SINE Alu 6 104 -45 1 1450 288 258 0 0 chr6 113387859 113387921 -36129116 + B3 SINE B2 1 62 -154 1 1450 1952 126 10 0 chr6 113387936 113388237 -36128800 - ORR1A3 LTR MaLR -22 304 1 1 1450 392 267 147 7 chr6 113388262 113388398 -36128639 + RSINE1 SINE B4 3 157 -8 1 1450 494 190 92 25 chr6 113388607 113388726 -36128311 + ID_B1 SINE B4 98 224 0 1 1450 237 65 0 0 chr6 113388726 113388757 -36128280 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1450 441 276 78 0 chr6 113389334 113389450 -36127587 + B1_Mur4 SINE Alu 26 150 0 1 1450 1187 97 6 0 chr6 113389469 113389645 -36127392 + (GAA)n Simple_repeat Simple_repeat 3 179 0 1 1450 789 207 75 15 chr6 113389661 113389862 -36127175 + B3 SINE B2 1 213 -3 1 1450 613 251 44 32 chr6 113389866 113390057 -36126980 - B3 SINE B2 -9 186 1 1 1450 26 30 0 0 chr6 113390166 113390199 -36126838 + AT_rich Low_complexity Low_complexity 1 33 0 1 1450 429 20 0 0 chr6 113391061 113391111 -36125926 + (TAGG)n Simple_repeat Simple_repeat 2 51 0 1 1450 355 264 103 0 chr6 113391115 113391202 -36125835 - PB1D10 SINE Alu -19 98 3 1 1450 563 250 48 14 chr6 113391247 113391393 -36125644 - B3 SINE B2 -9 207 57 1 1450 648 259 41 46 chr6 113391397 113391591 -36125446 + B3 SINE B2 2 194 -22 1 1450 332 114 257 0 chr6 113391588 113391658 -36125379 + B1_Mur2 SINE Alu 61 148 -1 1 1450 241 232 17 35 chr6 113391659 113391717 -36125320 - B3A SINE B2 -137 61 5 1 1450 25 0 0 0 chr6 113391717 113391742 -36125295 + AT_rich Low_complexity Low_complexity 1 25 0 1 1450 327 271 52 10 chr6 113392076 113392173 -36124864 + PB1D7 SINE Alu 13 113 -7 1 1450 405 240 253 0 chr6 113392188 113392338 -36124699 + B3 SINE B2 14 201 -15 1 1450 264 242 80 26 chr6 113393061 113393161 -36123876 - PB1D7 SINE Alu -1 119 18 1 1450 225 65 0 0 chr6 113393213 113393244 -36123793 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1450 318 264 144 53 chr6 113393244 113393376 -36123661 - B3A SINE B2 -34 164 21 1 1450 691 171 54 8 chr6 113393790 113393920 -36123117 - B1_Mus2 SINE Alu -3 144 9 1 1450 443 129 0 0 chr6 113393918 113393988 -36123049 + RLTR18B LTR ERVK 228 297 -215 1 1450 295 157 20 0 chr6 113394348 113394399 -36122638 + RLTR18B LTR ERVK 282 333 -179 1 1450 4835 192 58 62 chr6 113394470 113395669 -36121368 - RLTR21 LTR ERVK -377 1195 1 1 1450 611 206 20 60 chr6 113395669 113395778 -36121259 + RLTR18B LTR ERVK 335 437 -75 1 1450 771 228 58 11 chr6 113395865 113396056 -36120981 + B3 SINE B2 13 212 -4 1 1450 1098 68 0 13 chr6 113396060 113396209 -36120828 + B1_Mus2 SINE Alu 1 147 0 1 1450 640 35 0 22 chr6 113396213 113396302 -36120735 + (GGAA)n Simple_repeat Simple_repeat 3 89 0 1 1450 295 295 13 0 chr6 113396724 113396802 -36120235 - PB1D10 SINE Alu -7 110 32 1 1450 911 244 0 9 chr6 113398347 113398558 -36118479 + B3 SINE B2 1 209 -7 1 1450 405 202 41 31 chr6 113398562 113398659 -36118378 - B1_Mur2 SINE Alu -28 121 24 1 1450 1008 101 0 20 chr6 113398726 113398877 -36118160 + B1_Mus1 SINE Alu 1 148 0 1 1450 1393 51 0 6 chr6 113399445 113399621 -36117416 - B2_Mm2 SINE B2 -19 176 2 1 1450 450 188 20 3 chr6 113399622 113399723 -36117314 - PB1D9 SINE Alu -16 101 3 1 1450 337 241 0 114 chr6 113399723 113399761 -36117276 - MT2B LTR ERVL -444 157 135 1 1450 299 195 0 125 chr6 113399868 113399956 -36117081 + ID4 SINE ID 5 81 -2 1 1450 241 222 284 0 chr6 113400085 113400166 -36116871 - PB1D10 SINE Alu -13 104 1 1 1450 380 299 18 27 chr6 113400691 113400801 -36116236 + PB1D10 SINE Alu 3 111 -6 1 1450 815 246 50 10 chr6 113400931 113401132 -36115905 - B3 SINE B2 -6 210 2 1 1450 302 289 26 13 chr6 113401341 113401418 -36115619 - ID SINE ID -141 83 6 1 1450 237 256 145 12 chr6 113401437 113401520 -36115517 - B1_Mus2 SINE Alu -53 94 1 1 1450 245 284 34 11 chr6 113401447 113401536 -36115501 - MT2B LTR ERVL -360 241 151 1 1450 201 195 0 0 chr6 113401692 113401733 -36115304 + CT-rich Low_complexity Low_complexity 5 45 0 1 1450 498 289 8 8 chr6 113402377 113402506 -36114531 - ID_B1 SINE B4 -16 208 80 1 1450 646 188 47 8 chr6 113402933 113403062 -36113975 - B1_Mur2 SINE Alu -14 135 2 1 1450 3127 252 57 51 chr6 113403213 113404609 -36112428 + Lx5 LINE L1 5597 6926 -132 1 1450 460 167 0 22 chr6 113404609 113404701 -36112336 + RLTR15 LTR ERVK 1 90 -269 1 1450 1134 41 0 26 chr6 113404701 113404852 -36112185 + B1_Mus1 SINE Alu 2 148 0 1 1450 230 0 0 0 chr6 113404884 113404914 -36112123 + B3A SINE B2 3 32 -166 1 1450 28 29 0 0 chr6 113404945 113404980 -36112057 + AT_rich Low_complexity Low_complexity 1 35 0 1 1450 296 226 32 16 chr6 113405489 113405552 -36111485 - ID4 SINE ID -17 66 3 1 1450 732 200 28 0 chr6 113405586 113405731 -36111306 + B1_Mur2 SINE Alu 1 149 0 1 1450 234 0 0 0 chr6 113405837 113405863 -36111174 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1450 843 152 0 0 chr6 113405863 113405988 -36111049 - B1_Mus1 SINE Alu -12 136 12 1 1450 395 202 32 121 chr6 113405886 113406010 -36111027 - MT2B LTR ERVL -337 264 152 1 1450 422 248 66 8 chr6 113406035 113406157 -36110880 - B1F SINE Alu -9 140 12 1 1450 748 246 20 39 chr6 113406160 113406363 -36110674 + B3 SINE B2 5 203 -13 1 1450 22 57 0 19 chr6 113406375 113406392 -36110645 + AT_rich Low_complexity Low_complexity 1 17 0 1 1450 1216 34 0 0 chr6 113406392 113406538 -36110499 - B1_Mus2 SINE Alu 0 147 2 1 1450 22 57 0 19 chr6 113406538 113406574 -36110463 + AT_rich Low_complexity Low_complexity 1 36 0 1 1450 217 310 0 27 chr6 113406661 113406734 -36110303 - ID SINE ID -153 71 1 1 1450 485 257 29 0 chr6 113406756 113406861 -36110176 - RSINE1 SINE B4 -4 161 54 1 1450 618 296 34 5 chr6 113407074 113407278 -36109759 + ID_B1 SINE B4 1 210 -14 1 1450 803 257 23 27 chr6 113407295 113407515 -36109522 + B4A SINE B4 1 219 -73 1 1450 25 0 0 0 chr6 113407724 113407749 -36109288 + AT_rich Low_complexity Low_complexity 1 25 0 1 1450 805 138 30 37 chr6 113407761 113407896 -36109141 + B1_Mus1 SINE Alu 5 138 -10 1 1450 372 22 0 0 chr6 113407898 113407943 -36109094 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1450 315 0 0 0 chr6 113407943 113407977 -36109060 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1450 344 267 55 37 chr6 113409919 113410028 -36107009 - PB1D10 SINE Alu 0 117 7 1 1450 674 196 112 35 chr6 113410499 113410668 -36106369 + B3A SINE B2 1 182 -16 1 1450 732 153 7 30 chr6 113410747 113410882 -36106155 + B1_Mur4 SINE Alu 19 150 0 1 1450 669 202 70 0 chr6 113410911 113411040 -36105997 + B1_Mus1 SINE Alu 1 138 -10 1 1450 396 0 0 0 chr6 113411040 113411084 -36105953 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1450 902 221 36 67 chr6 113411182 113411405 -36105632 + B3 SINE B2 1 216 0 1 1450 21 0 0 0 chr6 113411438 113411459 -36105578 + AT_rich Low_complexity Low_complexity 1 21 0 1 1450 490 236 98 85 chr6 113411558 113411601 -36105436 - B3 SINE B2 -25 191 152 1 1450 219 69 0 0 chr6 113411601 113411630 -36105407 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1450 490 232 122 40 chr6 113411630 113411754 -36105283 - B3 SINE B2 -47 169 32 1 1450 556 216 17 0 chr6 113411773 113411889 -36105148 - B1_Mur1 SINE Alu -8 141 24 1 1450 566 242 89 0 chr6 113411959 113412116 -36104921 - Lx8 LINE L1 -333 7140 6970 1 1450 451 262 0 10 chr6 113413277 113413381 -36103656 + ID_B1 SINE B4 121 223 -1 1 1450 231 239 69 98 chr6 113414317 113414419 -36102618 - LTR48 LTR ERV1 -581 206 108 1 1450 306 0 0 0 chr6 113414887 113414921 -36102116 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1450 333 0 0 0 chr6 113414921 113414957 -36102080 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1450 186 196 102 51 chr6 113416571 113416630 -36100407 + MIR SINE MIR 65 126 -136 1 1450 470 262 108 41 chr6 113416717 113416912 -36100125 - B4A SINE B4 0 292 85 1 1450 620 70 160 0 chr6 113416925 113417025 -36100012 - B1_Mus1 SINE Alu -14 134 19 1 1450 345 47 0 0 chr6 113417025 113417068 -36099969 + (CCA)n Simple_repeat Simple_repeat 2 44 0 1 1450 186 71 0 0 chr6 113417079 113417107 -36099930 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1450 27 0 0 0 chr6 113417374 113417401 -36099636 + AT_rich Low_complexity Low_complexity 1 27 0 1 1450 186 348 54 11 chr6 113417767 113417860 -36099177 - L2b LINE L2 -9 3366 3270 1 1450 257 298 16 8 chr6 113417867 113417992 -36099045 + (TA)n Simple_repeat Simple_repeat 2 127 0 1 1450 207 0 0 0 chr6 113420368 113420391 -36096646 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1450 185 0 0 39 chr6 113420580 113420606 -36096431 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1 1450 411 221 20 40 chr6 113420606 113420705 -36096332 - PB1D9 SINE Alu -13 107 11 1 1450 282 348 31 0 chr6 113423067 113423212 -36093825 - L1M5 LINE L1 -2191 5594 5444 1 1450 189 0 0 0 chr6 113423272 113423293 -36093744 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1450 198 0 0 0 chr6 113423293 113423315 -36093722 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1450 425 263 10 10 chr6 113423325 113423425 -36093612 - RSINE1 SINE B4 -34 131 32 1 1450 431 75 48 36 chr6 113423422 113423505 -36093532 - ORR1A2 LTR MaLR -243 84 1 1 1450 320 176 0 56 chr6 113423584 113423656 -36093381 + ID4 SINE ID 5 72 -11 1 1450 675 0 0 0 chr6 113423657 113423732 -36093305 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1450 279 79 0 0 chr6 113424714 113424752 -36092285 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 1 1450 563 204 112 15 chr6 113425019 113425153 -36091884 - B1_Mur2 SINE Alu -1 148 2 1 1450 488 212 35 9 chr6 113425226 113425340 -36091697 - PB1D10 SINE Alu 0 117 1 1 1450 492 327 121 58 chr6 113425552 113426144 -36090893 - L2a LINE L2 -6 3420 2787 1 1450 325 229 126 18 chr6 113427115 113427226 -36089811 + MIRb SINE MIR 65 187 -81 1 1450 256 292 50 50 chr6 113427778 113427897 -36089140 + L2b LINE L2 3233 3351 -24 1 1450 221 122 24 0 chr6 113427897 113427938 -36089099 + L2b LINE L2 3311 3352 -23 1 1450 202 128 26 0 chr6 113427938 113427977 -36089060 + L2b LINE L2 3312 3351 -24 1 1450 216 262 66 0 chr6 113427977 113428038 -36088999 + L2b LINE L2 3311 3375 0 1 1450 227 281 0 0 chr6 113428223 113428280 -36088757 + L2b LINE L2 3318 3374 -1 1 1450 234 0 0 0 chr6 113428402 113428428 -36088609 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1450 411 45 152 0 chr6 113428447 113428513 -36088524 - B1_Mus1 SINE Alu -72 76 1 1 1450 494 137 126 0 chr6 113428514 113428609 -36088428 + PB1D9 SINE Alu 13 119 -1 1 1450 310 312 85 15 chr6 113429465 113429481 -36087556 - L2a LINE L2 -3 3423 3405 1 1450 564 211 13 78 chr6 113429481 113429635 -36087402 + B1F SINE Alu 1 144 -5 1 1450 310 312 85 15 chr6 113429635 113429748 -36087289 - L2a LINE L2 -22 3404 3285 1 1450 499 228 126 31 chr6 113431378 113431505 -36085532 + RSINE1 SINE B4 12 150 -15 1 1450 182 303 76 76 chr6 113434111 113434243 -36082794 + MIR SINE MIR 21 152 -110 1 1450 847 139 14 7 chr6 113434259 113434404 -36082633 + B1_Mur3 SINE Alu 2 147 -2 1 1450 340 225 25 0 chr6 113434919 113434999 -36082038 - B3 SINE B2 -75 141 60 1 1450 1170 47 0 0 chr6 113435304 113435452 -36081585 - B1_Mus1 SINE Alu 0 148 1 1 1450 535 225 9 0 chr6 113435936 113436047 -36080990 - PB1D9 SINE Alu -8 112 1 1 1450 320 285 132 44 chr6 113436077 113436213 -36080824 - RSINE1 SINE B4 -6 159 12 1 1450 248 270 16 0 chr6 113436389 113436452 -36080585 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 1 1450 1100 69 0 14 chr6 113436470 113436617 -36080420 - B1_Mus2 SINE Alu -1 146 2 1 1450 316 307 79 0 chr6 113436627 113436728 -36080309 - PB1D10 SINE Alu -8 109 1 1 1450 350 273 0 0 chr6 113436652 113436729 -36080308 - ID_B1 SINE B4 -67 157 81 1 1450 715 264 18 0 chr6 113436776 113436943 -36080094 + ID_B1 SINE B4 3 172 -52 1 1450 413 205 26 0 chr6 113436945 113437023 -36080014 - B1F1 SINE Alu -69 80 1 1 1450 988 281 57 46 chr6 113437025 113437462 -36079575 - L1MB5 LINE L1 -115 6059 5618 1 1450 187 194 206 16 chr6 113437870 113437933 -36079104 - MIRb SINE MIR -159 109 35 1 1450 350 271 59 0 chr6 113438855 113438969 -36078068 - PB1D10 SINE Alu -188 126 1 1 1450 290 299 17 70 chr6 113439051 113439166 -36077871 + PB1D10 SINE Alu 6 114 -3 1 1450 666 164 78 0 chr6 113440021 113440149 -36076888 - B1_Mus1 SINE Alu 0 148 11 1 1450 662 268 0 7 chr6 113440216 113440370 -36076667 + RSINE1 SINE B4 13 165 0 1 1450 1158 55 0 0 chr6 113440424 113440570 -36076467 + B1_Mus2 SINE Alu 2 147 0 1 1450 388 276 48 8 chr6 113440596 113440720 -36076317 + ID_B1 SINE B4 79 207 -17 1 1450 710 171 0 8 chr6 113440732 113440862 -36076175 + B1_Mur4 SINE Alu 9 137 -13 1 1450 180 0 0 0 chr6 113440862 113440882 -36076155 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1450 1111 62 0 7 chr6 113441084 113441231 -36075806 - B1_Mus1 SINE Alu -1 147 2 1 1450 1071 41 117 50 chr6 113441242 113441422 -36075615 - B2_Mm1a SINE B2 0 193 2 1 1450 808 222 34 10 chr6 113443430 113443635 -36073402 + B3 SINE B2 1 210 -6 1 1450 21 36 0 0 chr6 113444530 113444558 -36072479 + GC_rich Low_complexity Low_complexity 1 28 0 1 1450 490 252 85 16 chr6 113446116 113446245 -36070792 + ID_B1 SINE B4 87 224 0 1 1450 388 247 0 0 chr6 113446478 113446551 -36070486 - ID4_ SINE ID -9 74 2 1 1450 467 241 26 43 chr6 113446564 113446681 -36070356 - B1F SINE Alu -8 141 27 1 1450 864 154 0 0 chr6 113448685 113448815 -36068222 - B3 SINE B2 -86 130 1 1 1450 690 181 71 14 chr6 113448819 113448959 -36068078 - B1_Mur1 SINE Alu 0 149 2 1 1450 467 169 0 10 chr6 113448987 113449083 -36067954 + (TA)n Simple_repeat Simple_repeat 2 96 0 1 1450 346 25 0 0 chr6 113449083 113449123 -36067914 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1450 472 260 99 49 chr6 113449149 113449311 -36067726 - B3A SINE B2 -28 170 1 1 1450 701 199 37 0 chr6 113449370 113449506 -36067531 - RSINE1 SINE B4 -22 143 3 1 1450 304 336 16 41 chr6 113449606 113449727 -36067310 + MIR SINE MIR 90 207 -55 1 1450 773 203 51 51 chr6 113449934 113450079 -36066958 + RSINE1 SINE B4 4 150 -15 1 1450 243 114 0 0 chr6 113450079 113450123 -36066914 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1450 303 202 233 23 chr6 113450165 113450251 -36066786 + B1F2 SINE Alu 45 148 -1 1 1450 273 346 88 21 chr6 113450270 113450462 -36066575 - L2c LINE L2 -177 3210 3006 1 1450 280 226 9 37 chr6 113451297 113451386 -36065651 - MIRb SINE MIR -105 163 81 1 1450 182 244 0 0 chr6 113452119 113452160 -36064877 - L3 LINE CR1 -112 4377 4337 1 1450 228 312 0 0 chr6 113452323 113452387 -36064650 + T-rich Low_complexity Low_complexity 4 67 0 1 1450 246 81 0 0 chr6 113452405 113452442 -36064595 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1450 313 200 0 0 chr6 113452469 113452524 -36064513 - RSINE1 SINE B4 -61 104 50 1 1450 1936 142 127 6 chr6 113452651 113452819 -36064218 - ORR1C2 LTR MaLR -3 381 171 1 1450 207 88 0 0 chr6 113452819 113452853 -36064184 + (CAGA)n Simple_repeat Simple_repeat 4 37 0 1 1450 1936 142 127 6 chr6 113452853 113453024 -36064013 - ORR1C2 LTR MaLR -214 170 1 1 1450 2556 113 61 50 chr6 113453081 113453539 -36063498 - RMER4A LTR ERVK 0 466 4 1 1450 323 247 14 0 chr6 113453681 113453754 -36063283 - ID4_ SINE ID -8 75 2 1 1450 1251 54 0 0 chr6 113453899 113454047 -36062990 + B1_Mus1 SINE Alu 1 148 0 1 1450 315 105 0 0 chr6 113454047 113454104 -36062933 + (A)n Simple_repeat Simple_repeat 1 57 0 1 1450 398 190 114 0 chr6 113454253 113454332 -36062705 + ID_B1 SINE B4 110 197 -27 1 1450 213 108 0 0 chr6 113454369 113454406 -36062631 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1450 614 266 7 7 chr6 113454408 113454548 -36062489 + ID_B1 SINE B4 75 214 -10 1 1450 773 162 0 0 chr6 113454560 113454677 -36062360 + B1_Mur2 SINE Alu 4 120 -29 1 1450 1068 86 6 17 chr6 113454689 113454866 -36062171 + (TCTA)n Simple_repeat Simple_repeat 1 175 0 1 1450 459 309 32 0 chr6 113455327 113455453 -36061584 + RSINE1 SINE B4 5 134 -31 1 1450 1267 34 0 0 chr6 113455499 113455645 -36061392 - B1_Mm SINE Alu 0 147 2 1 1450 594 244 32 0 chr6 113455683 113455806 -36061231 + B1_Mur1 SINE Alu 23 149 0 1 1450 300 111 0 0 chr6 113455969 113456014 -36061023 + (GGGA)n Simple_repeat Simple_repeat 1 45 0 1 1450 198 0 0 0 chr6 113456197 113456219 -36060818 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 1450 319 258 125 65 chr6 113456630 113456908 -36060129 + ORR1E LTR MaLR 51 322 -52 1 1450 1428 67 0 44 chr6 113456916 113457119 -36059918 - B2_Mm2 SINE B2 0 195 2 1 1450 419 87 0 14 chr6 113457261 113457331 -36059706 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1450 570 144 10 67 chr6 113457656 113457760 -36059277 - B1_Mus1 SINE Alu -50 98 1 1 1450 1204 155 48 0 chr6 113457763 113457969 -36059068 - B3 SINE B2 0 216 1 1 1450 722 323 26 13 chr6 113457972 113458198 -36058839 - B4 SINE B4 -62 230 2 1 1450 280 369 42 31 chr6 113458567 113458760 -36058277 - MIRb SINE MIR -24 244 50 1 1450 1036 78 21 7 chr6 113459427 113459569 -36057468 - B1_Mur4 SINE Alu -5 145 2 1 1450 21 57 0 0 chr6 113459578 113459613 -36057424 + AT_rich Low_complexity Low_complexity 1 35 0 1 1450 5208 59 16 19 chr6 113460294 113460971 -36056066 - L1Md_F2 LINE L1 -4 6578 5904 1 1450 217 222 70 58 chr6 113461026 113461112 -36055925 + PB1D10 SINE Alu 30 116 -1 1 1450 256 329 71 0 chr6 113461160 113461173 -36055864 - ID_B1 SINE B4 -128 96 6 1 1450 265 300 56 28 chr6 113461173 113461245 -36055792 - ID4 SINE ID -4 79 6 1 1450 463 284 9 0 chr6 113461262 113461378 -36055659 - ID_B1 SINE B4 -7 217 101 1 1450 429 274 51 22 chr6 113461378 113461400 -36055637 - B1F1 SINE Alu -7 142 1 1 1450 739 223 104 47 chr6 113461680 113461892 -36055145 + MTD LTR MaLR 10 233 -186 1 1450 420 174 19 32 chr6 113462097 113462199 -36054838 + MTD LTR MaLR 217 316 -105 1 1450 230 69 0 0 chr6 113462205 113462234 -36054803 - MT2A LTR ERVL 0 533 505 1 1450 1582 157 151 35 chr6 113462267 113462536 -36054501 - MTC LTR MaLR 0 421 114 1 1450 1391 65 5 21 chr6 113462536 113462726 -36054311 + B2_Mm2 SINE B2 2 188 -7 1 1450 1582 157 151 35 chr6 113462726 113462833 -36054204 - MTC LTR MaLR -308 113 1 1 1450 757 274 19 5 chr6 113462878 113463087 -36053950 - ID_B1 SINE B4 -11 213 2 1 1450 374 250 35 18 chr6 113463557 113463671 -36053366 - L1MB7 LINE L1 -136 6048 5933 1 1450 189 0 0 0 chr6 113463685 113463706 -36053331 + (GGATG)n Simple_repeat Simple_repeat 3 23 0 1 1450 378 274 15 88 chr6 113463706 113463831 -36053206 + ID_B1 SINE B4 85 201 -23 1 1450 608 211 60 45 chr6 113463713 113463847 -36053190 + B1_Mur1 SINE Alu 9 144 -5 1 1450 407 205 13 13 chr6 113463871 113463950 -36053087 + ID4 SINE ID 2 80 -3 1 1450 350 268 205 26 chr6 113463988 113464222 -36052815 - L1MB7 LINE L1 -315 5863 5588 1 1450 904 217 59 0 chr6 113464504 113464707 -36052330 + B3 SINE B2 1 215 -1 1 1450 300 226 0 0 chr6 113465188 113465250 -36051787 - Tigger14a DNA MER2_type -164 160 99 1 1450 331 288 99 64 chr6 113466232 113466373 -36050664 + B1F2 SINE Alu 2 147 -2 1 1450 283 176 0 38 chr6 113466458 113466511 -36050526 - ID_B1 SINE B4 0 224 174 1 1450 248 246 45 30 chr6 113466511 113466525 -36050512 - PB1D9 SINE Alu 0 120 53 1 1450 943 221 58 19 chr6 113466607 113466815 -36050222 + B3 SINE B2 1 216 0 1 1450 253 176 0 117 chr6 113466806 113466883 -36050154 - MER44D DNA MER2_type -170 535 468 1 1450 501 225 34 0 chr6 113466899 113466988 -36050049 - MER44D DNA MER2_type -484 221 130 1 1450 231 250 111 43 chr6 113466952 113467069 -36049968 - LTR53 LTR ERVL -140 379 255 1 1450 717 176 47 40 chr6 113469064 113469212 -36047825 + B1_Mur2 SINE Alu 1 149 0 1 1450 370 297 78 127 chr6 113469223 113469570 -36047467 + ORR1E LTR MaLR 30 359 0 1 1450 401 54 18 0 chr6 113469759 113469815 -36047222 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1450 489 229 27 18 chr6 113470650 113470761 -36046276 - PB1D9 SINE Alu -7 113 2 1 1450 1288 86 36 31 chr6 113470870 113471063 -36045974 - B2_Mm2 SINE B2 0 195 2 1 1450 259 282 38 13 chr6 113471119 113471198 -36045839 + ID4 SINE ID 3 83 0 1 1450 953 215 55 30 chr6 113471260 113471472 -36045565 - B3 SINE B2 -25 191 1 1 1450 272 250 69 0 chr6 113472116 113472188 -36044849 + ID4_ SINE ID 1 77 -6 1 1450 979 193 58 29 chr6 113473823 113474031 -36043006 + B3 SINE B2 1 214 -2 1 1450 617 204 19 0 chr6 113474099 113474207 -36042830 - PB1D9 SINE Alu -9 111 2 1 1450 200 278 55 14 chr6 113474209 113474282 -36042755 + MIRc SINE MIR 70 145 -123 1 1450 334 265 222 0 chr6 113474392 113474509 -36042528 + ID_B1 SINE B4 81 223 -1 1 1450 732 221 106 20 chr6 113474664 113474863 -36042174 - B3 SINE B2 0 216 1 1 1450 1053 199 43 5 chr6 113475018 113475225 -36041812 + B3 SINE B2 2 216 0 1 1450 598 209 84 45 chr6 113475349 113475504 -36041533 - RSINE1 SINE B4 0 165 5 1 1450 205 250 68 45 chr6 113475597 113475685 -36041352 + MIRm SINE MIR 158 247 -29 1 1450 231 310 40 96 chr6 113476014 113476071 -36040966 - B1_Mur2 SINE Alu -22 127 78 1 1450 1836 192 62 42 chr6 113476071 113476118 -36040919 - ORR1B1 LTR MaLR 0 394 352 1 1450 1091 96 0 14 chr6 113476118 113476266 -36040771 - B1_Mus1 SINE Alu 0 148 3 1 1450 1836 192 62 42 chr6 113476266 113476604 -36040433 - ORR1B1 LTR MaLR -43 351 1 1 1450 329 284 15 0 chr6 113476604 113476671 -36040366 - PB1D10 SINE Alu -40 77 10 1 1450 448 276 31 0 chr6 113476727 113476825 -36040212 - RSINE1 SINE B4 -9 156 56 1 1450 262 261 121 30 chr6 113476969 113477135 -36039902 - RMER12 LTR ERVK -472 850 670 1 1450 735 259 7 0 chr6 113477134 113477273 -36039764 - B1_Mur1 SINE Alu -7 142 3 1 1450 640 281 50 6 chr6 113477408 113477569 -36039468 - B3A SINE B2 -7 191 24 1 1450 458 237 26 9 chr6 113477744 113477859 -36039178 - PB1D10 SINE Alu 0 117 1 1 1450 307 333 27 54 chr6 113477881 113477992 -36039045 - PB1D7 SINE Alu -11 109 2 1 1450 1248 34 0 7 chr6 113478540 113478688 -36038349 + B1_Mus2 SINE Alu 1 147 0 1 1450 195 278 174 22 chr6 113478851 113478943 -36038094 + MIR SINE MIR 86 191 -71 1 1450 845 213 19 33 chr6 113478976 113479190 -36037847 + B3 SINE B2 1 211 -5 1 1450 803 177 0 21 chr6 113479200 113479344 -36037693 - B1_Mur2 SINE Alu -2 147 7 1 1450 23 33 0 0 chr6 113479360 113479390 -36037647 + AT_rich Low_complexity Low_complexity 1 30 0 1 1450 284 267 121 36 chr6 113479610 113479750 -36037287 + MIR SINE MIR 111 262 0 1 1450 189 0 0 0 chr6 113479798 113479819 -36037218 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1450 590 211 93 29 chr6 113479846 113480051 -36036986 - ID_B1 SINE B4 -6 218 1 1 1450 1289 76 47 0 chr6 113480072 113480244 -36036793 + B2_Mm2 SINE B2 2 181 -14 1 1450 318 192 95 9 chr6 113480244 113480349 -36036688 - MER113 DNA MER1_type -109 412 299 1 1450 195 129 0 0 chr6 113480354 113480385 -36036652 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1450 1217 62 0 0 chr6 113480385 113480531 -36036506 - B1_Mus2 SINE Alu 0 147 2 1 1450 383 283 33 46 chr6 113481042 113481194 -36035843 - MIR SINE MIR 0 262 113 1 1450 748 228 77 5 chr6 113481950 113482144 -36034893 - B3 SINE B2 -7 209 2 1 1450 912 166 45 0 chr6 113482181 113482338 -36034699 + B2_Mm2 SINE B2 5 168 -27 1 1450 367 134 33 99 chr6 113482368 113482459 -36034578 + PB1D9 SINE Alu 35 119 -1 1 1450 320 267 178 0 chr6 113482511 113482601 -36034436 + ID_B1 SINE B4 102 207 -17 1 1450 244 226 205 54 chr6 113482601 113482623 -36034414 + B1F1 SINE Alu 21 149 0 1 1450 259 295 0 16 chr6 113482671 113482733 -36034304 + MIR SINE MIR 20 80 -182 1 1450 300 211 29 135 chr6 113482816 113482920 -36034117 - B1F SINE Alu -1 148 56 1 1450 951 249 10 0 chr6 113482940 113483141 -36033896 + B3 SINE B2 5 207 -9 1 1450 634 247 120 10 chr6 113484089 113484281 -36032756 + B3 SINE B2 4 216 0 1 1450 1444 69 16 11 chr6 113484281 113484471 -36032566 - B2_Mm2 SINE B2 -3 192 2 1 1450 642 200 89 0 chr6 113484570 113484705 -36032332 + B1_Mur2 SINE Alu 3 149 0 1 1450 612 251 189 0 chr6 113484852 113485043 -36031994 + B4 SINE B4 1 227 -65 1 1450 232 48 48 0 chr6 113485215 113485257 -36031780 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1450 1301 20 0 0 chr6 113485258 113485405 -36031632 - B1_Mus2 SINE Alu 0 147 1 1 1450 396 0 0 0 chr6 113486134 113486178 -36030859 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1450 543 221 109 28 chr6 113486404 113486588 -36030449 + B3A SINE B2 2 194 -1 1 1450 498 299 0 21 chr6 113487350 113487490 -36029547 - B1_Mur2 SINE Alu -12 137 1 1 1450 636 278 53 0 chr6 113487881 113488032 -36029005 - B3A SINE B2 -39 159 1 1 1450 475 291 48 0 chr6 113488193 113488358 -36028679 - B3A SINE B2 -23 175 3 1 1450 379 207 0 58 chr6 113489621 113489708 -36027329 + B3 SINE B2 1 82 -134 1 1450 27 0 0 0 chr6 113489725 113489752 -36027285 + AT_rich Low_complexity Low_complexity 1 27 0 1 1450 989 145 0 0 chr6 113489877 113490022 -36027015 + B1_Mus2 SINE Alu 3 147 0 1 1450 191 61 30 0 chr6 113490026 113490059 -36026978 + (TTTAA)n Simple_repeat Simple_repeat 5 38 0 1 1450 849 104 180 47 chr6 113490104 113490276 -36026761 + B2_Mm2 SINE B2 1 195 0 1 1450 497 286 163 5 chr6 113490288 113490478 -36026559 + ID_B1 SINE B4 4 223 -1 1 1450 575 277 0 34 chr6 113490642 113490788 -36026249 + ID_B1 SINE B4 84 224 0 1 1450 506 214 22 0 chr6 113490804 113490893 -36026144 + PB1D9 SINE Alu 30 120 0 1 1450 246 345 95 0 chr6 113490925 113491041 -36025996 - B1F2 SINE Alu -20 129 3 1 1450 841 146 7 34 chr6 113491066 113491215 -36025822 - B1_Mur4 SINE Alu 0 150 6 1 1450 865 254 0 32 chr6 113491222 113491442 -36025595 - B3 SINE B2 -1 215 3 1 1450 871 214 56 20 chr6 113491491 113491687 -36025350 - ORR1D1 LTR MaLR -7 367 165 1 1450 995 205 5 14 chr6 113491742 113491932 -36025105 - B3 SINE B2 -6 192 1 1 1450 393 61 0 0 chr6 113492339 113492388 -36024649 + MTB_Mm LTR MaLR 70 118 -289 1 1450 1003 82 0 0 chr6 113492383 113492518 -36024519 + B1_Mus2 SINE Alu 13 147 0 1 1450 28 0 0 0 chr6 113492522 113492550 -36024487 + AT_rich Low_complexity Low_complexity 1 28 0 1 1450 1243 34 7 0 chr6 113492614 113492760 -36024277 - B1_Mus2 SINE Alu 0 147 1 1 1450 1115 160 10 40 chr6 113492763 113492965 -36024072 + URR1B DNA MER1_type 1 196 -29 1 1450 540 245 0 0 chr6 113492973 113493075 -36023962 + B3 SINE B2 2 103 -113 1 1450 315 0 0 0 chr6 113493110 113493145 -36023892 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1450 646 131 78 105 chr6 113493197 113493350 -36023687 + B1_Mur3 SINE Alu 1 149 0 1 1450 3442 29 5 17 chr6 113493635 113494051 -36022986 - IAPLTR2a LTR ERVK 0 411 1 1 1450 562 225 49 7 chr6 113494188 113494331 -36022706 - B1F2 SINE Alu 0 149 1 1 1450 225 0 0 0 chr6 113494543 113494568 -36022469 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1450 865 254 99 33 chr6 113494599 113494872 -36022165 - B4 SINE B4 -1 291 1 1 1450 393 295 42 71 chr6 113495209 113495377 -36021660 + RSINE1 SINE B4 3 165 0 1 1450 210 296 0 0 chr6 113495377 113495431 -36021606 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1450 337 346 9 0 chr6 113495432 113495539 -36021498 + ID_B1 SINE B4 115 222 -2 1 1450 561 257 168 21 chr6 113495542 113495733 -36021304 + ID_B1 SINE B4 3 221 -3 1 1450 538 155 8 178 chr6 113495739 113495883 -36021154 + B1_Mur4 SINE Alu 5 126 -24 1 1450 706 234 70 6 chr6 113495896 113496068 -36020969 + MER2 DNA MER2_type 100 282 -63 1 1450 3294 56 2 2 chr6 113496087 113496483 -36020554 + MTA_Mm LTR MaLR 1 396 0 1 1450 243 0 0 0 chr6 113496780 113496807 -36020230 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1450 251 190 0 17 chr6 113496878 113496937 -36020100 + CT-rich Low_complexity Low_complexity 1 58 0 1 1450 1247 75 36 31 chr6 113496937 113496967 -36020070 - B2_Mm1a SINE B2 0 193 163 1 1450 234 0 0 0 chr6 113496967 113496993 -36020044 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1 1450 1247 75 36 31 chr6 113496993 113497154 -36019883 - B2_Mm1a SINE B2 -31 162 1 1 1450 480 248 0 25 chr6 113497154 113497274 -36019763 - PB1D10 SINE Alu 0 117 1 1 1450 302 342 15 0 chr6 113497287 113497380 -36019657 - ID4_ SINE ID -45 107 9 1 1450 725 259 127 57 chr6 113497425 113497654 -36019383 - B4 SINE B4 -2 290 46 1 1450 502 292 130 0 chr6 113497658 113497812 -36019225 + ID_B1 SINE B4 3 176 -48 1 1450 304 247 0 0 chr6 113500035 113500120 -36016917 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1450 288 301 52 11 chr6 113500128 113500223 -36016814 - B1F SINE Alu -29 120 17 2 1450 527 294 47 14 chr6 113500396 113500544 -36016493 - ID_B1 SINE B4 -6 218 66 3 1450 650 142 37 66 chr6 113500687 113500823 -36016214 - B1_Mur3 SINE Alu 0 149 18 4 1450 379 236 43 52 chr6 113500830 113500946 -36016091 - B3A SINE B2 -75 123 9 5 1450 901 142 8 0 chr6 113501172 113501306 -36015731 + B1_Mm SINE Alu 1 135 -12 6 1450 309 51 0 0 chr6 113501307 113501346 -36015691 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1450 799 237 24 87 chr6 113502196 113502404 -36014633 - B3A SINE B2 0 198 4 8 1450 504 216 21 0 chr6 113502435 113502532 -36014505 - B1_Mur1 SINE Alu 0 149 51 9 1450 1088 229 44 37 chr6 113502694 113502966 -36014071 + B4 SINE B4 5 278 -14 1 1450 238 295 0 0 chr6 113503444 113503505 -36013532 + ID4_ SINE ID 1 61 -22 1 1450 250 310 34 17 chr6 113503961 113504079 -36012958 + PB1D7 SINE Alu 1 120 0 1 1450 1120 92 98 0 chr6 113504090 113504254 -36012783 + B2_Mm2 SINE B2 2 181 -14 1 1450 1279 20 0 20 chr6 113504268 113504418 -36012619 - B1_Mm SINE Alu 0 147 1 1 1450 25 31 0 0 chr6 113504418 113504450 -36012587 + AT_rich Low_complexity Low_complexity 1 32 0 1 1450 328 211 151 32 chr6 113504866 113504959 -36012078 + B1F SINE Alu 6 109 -40 1 1450 295 289 137 35 chr6 113505639 113505836 -36011201 - L1MA5 LINE L1 -382 5918 5702 1 1450 951 236 24 5 chr6 113505912 113506121 -36010916 + B3 SINE B2 2 214 -2 1 1450 25 99 0 0 chr6 113506123 113506204 -36010833 + AT_rich Low_complexity Low_complexity 1 81 0 1 1450 346 181 11 98 chr6 113506432 113506524 -36010513 + B1_Mur4 SINE Alu 64 147 -3 2 1450 5081 111 67 41 chr6 113506594 113507087 -36009950 + RMER12 LTR ERVK 4 504 -818 2 1450 1692 31 0 0 chr6 113507087 113507279 -36009758 + B2_Mm1a SINE B2 2 193 0 2 1450 5081 111 67 41 chr6 113507279 113507647 -36009390 + RMER12 LTR ERVK 505 888 -434 2 1450 351 0 0 0 chr6 113507647 113507686 -36009351 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1450 481 270 152 88 chr6 113507686 113507908 -36009129 + RMER12B LTR ERVK 1254 1572 0 2 1450 450 236 156 8 chr6 113507935 113508063 -36008974 + B1_Mur1 SINE Alu 1 147 -2 2 1451 512 222 145 17 chr6 113508636 113508815 -36008222 - L1MB4 LINE L1 -1 6179 5978 2 1451 293 302 73 28 chr6 113508972 113509149 -36007888 - L1MB4 LINE L1 -437 5743 5559 2 1451 356 222 139 0 chr6 113509191 113509299 -36007738 - L1MB4 LINE L1 -1536 4610 4488 2 1451 981 173 0 0 chr6 113509458 113509608 -36007429 - B1_Mur4 SINE Alu 0 150 1 2 1451 229 315 32 21 chr6 113509690 113509784 -36007253 + RSINE1 SINE B4 35 129 -36 2 1451 23 0 0 0 chr6 113510250 113510273 -36006764 + AT_rich Low_complexity Low_complexity 1 23 0 2 1451 560 227 128 85 chr6 113510461 113510649 -36006388 - B3A SINE B2 -1 197 2 3 1451 249 322 147 38 chr6 113511092 113511276 -36005761 + MIR SINE MIR 15 218 -44 3 1451 293 280 0 51 chr6 113511311 113511390 -36005647 + PB1 SINE Alu 51 125 -2 3 1451 238 337 42 0 chr6 113511461 113511556 -36005481 + PB1 SINE Alu 27 125 -2 3 1451 707 184 24 0 chr6 113511958 113512083 -36004954 - B1F2 SINE Alu -21 128 1 3 1451 281 294 84 85 chr6 113512083 113512220 -36004817 - MT2B2 LTR ERVL -425 159 34 3 1451 443 271 31 0 chr6 113512529 113512658 -36004379 - B1F2 SINE Alu -7 142 10 3 1451 474 322 62 22 chr6 113512871 113513049 -36003988 - MIRb SINE MIR -2 266 82 3 1451 701 294 15 5 chr6 113513667 113513872 -36003165 - B3 SINE B2 -6 210 4 3 1451 241 324 64 9 chr6 113515979 113516088 -36000949 + B3A SINE B2 1 115 -83 3 1451 480 62 0 0 chr6 113516125 113516189 -36000848 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1451 443 287 77 32 chr6 113516330 113516485 -36000552 + ID_B1 SINE B4 43 204 -20 4 1451 412 258 119 15 chr6 113516558 113516692 -36000345 - B1F SINE Alu -1 148 1 4 1451 696 98 0 0 chr6 113516971 113517073 -35999964 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 4 1451 565 93 35 0 chr6 113517073 113517159 -35999878 - B1_Mur4 SINE Alu -13 137 49 4 1451 1189 74 0 0 chr6 113517271 113517419 -35999618 + B1_Mus1 SINE Alu 1 148 0 4 1451 968 240 29 0 chr6 113517452 113517656 -35999381 + B3 SINE B2 1 210 -6 4 1451 394 234 138 43 chr6 113517695 113517811 -35999226 + PB1D9 SINE Alu 22 149 -1 4 1451 1127 248 130 46 chr6 113518892 113519239 -35997798 + MTD LTR MaLR 32 407 -12 4 1451 415 269 28 0 chr6 113519390 113519498 -35997539 - PB1D7 SINE Alu -7 113 3 4 1451 409 225 43 33 chr6 113519573 113519665 -35997372 + PB1D10 SINE Alu 12 104 -13 5 1451 230 0 0 32 chr6 113519665 113519696 -35997341 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 5 1451 270 370 30 0 chr6 113519700 113519800 -35997237 + RSINE1 SINE B4 5 107 -58 5 1451 243 260 71 71 chr6 113520141 113520253 -35996784 - MIRc SINE MIR -149 119 8 5 1451 515 248 196 18 chr6 113520455 113520623 -35996414 + B3A SINE B2 1 198 0 5 1451 1077 30 67 0 chr6 113520647 113520781 -35996256 - B1_Mus2 SINE Alu 0 147 5 5 1451 567 164 100 0 chr6 113521119 113521229 -35995808 + B1_Mur4 SINE Alu 24 144 -6 5 1451 1544 48 11 0 chr6 113521745 113521932 -35995105 + B2_Mm1t SINE B2 1 189 -4 5 1451 651 84 0 0 chr6 113522102 113522197 -35994840 + (TG)n Simple_repeat Simple_repeat 1 95 0 5 1451 201 39 0 0 chr6 113522947 113522973 -35994064 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1451 429 20 0 0 chr6 113523110 113523160 -35993877 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1451 519 268 55 0 chr6 113523219 113523346 -35993691 - ID_B1 SINE B4 -8 216 83 6 1451 805 169 29 0 chr6 113523343 113523479 -35993558 - B3A SINE B2 -58 140 1 6 1451 1272 34 0 0 chr6 113523496 113523643 -35993394 - B1_Mus2 SINE Alu 0 147 1 6 1451 756 102 187 52 chr6 113523834 113523989 -35993048 - B2_Mm2 SINE B2 -17 178 3 6 1451 544 242 176 0 chr6 113524993 113525175 -35991862 - ID_B1 SINE B4 -9 215 2 6 1451 830 230 2 6 chr6 113525207 113525399 -35991638 - B3A SINE B2 -25 191 3 6 1451 242 85 43 0 chr6 113525435 113525462 -35991575 + (TTTTTG)n Simple_repeat Simple_repeat 4 32 0 6 1451 1707 21 0 0 chr6 113525462 113525652 -35991385 - B2_Mm1a SINE B2 -2 191 2 6 1451 242 85 43 0 chr6 113525652 113525671 -35991366 + (TTTTTG)n Simple_repeat Simple_repeat 3 21 0 6 1451 1086 58 0 14 chr6 113525697 113525838 -35991199 - B1_Mus2 SINE Alu 0 147 9 7 1451 457 156 25 122 chr6 113525734 113525865 -35991172 - MT2B LTR ERVL -320 264 149 7 1451 261 0 0 0 chr6 113525865 113525894 -35991143 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1451 445 176 37 163 chr6 113525894 113525952 -35991085 - MT2B LTR ERVL -436 148 99 7 1451 379 197 13 26 chr6 113525907 113525985 -35991052 - RSINE1 SINE B4 -72 93 17 7 1451 342 285 148 43 chr6 113526192 113526537 -35990500 + L2 LINE L2 2387 2767 -652 7 1451 270 0 0 0 chr6 113526946 113526976 -35990061 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1451 1253 107 0 0 chr6 113527079 113527247 -35989790 - B2_Mm2 SINE B2 -27 168 1 7 1451 676 215 21 49 chr6 113527643 113527785 -35989252 - B1_Mur1 SINE Alu -10 139 2 7 1451 324 175 18 0 chr6 113527821 113527878 -35989159 - B3 SINE B2 -158 58 1 7 1451 239 276 13 13 chr6 113527881 113527958 -35989079 - PB1D10 SINE Alu 0 117 41 7 1451 212 238 0 0 chr6 113528109 113528151 -35988886 + (CATCC)n Simple_repeat Simple_repeat 3 44 0 8 1451 190 51 77 0 chr6 113528707 113528746 -35988291 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 8 1451 809 201 143 0 chr6 113528777 113528966 -35988071 - B3 SINE B2 0 216 1 8 1451 1151 107 0 6 chr6 113528980 113529159 -35987878 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 8 1451 343 108 0 44 chr6 113529160 113529228 -35987809 + C-rich Low_complexity Low_complexity 1 65 0 8 1451 303 347 68 4 chr6 113529330 113529472 -35987565 - B1F2 SINE Alu -2 147 1 8 1451 1625 210 43 20 chr6 113529498 113529848 -35987189 - ORR1D1 LTR MaLR -3 371 14 8 1451 432 0 0 0 chr6 113529859 113529907 -35987130 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1451 383 221 51 31 chr6 113530057 113530155 -35986882 - PB1D10 SINE Alu -7 110 11 8 1451 406 303 30 0 chr6 113530458 113530557 -35986480 + PB1D10 SINE Alu 2 103 -14 8 1451 702 291 5 58 chr6 113530559 113530767 -35986270 - ID_B1 SINE B4 0 224 28 9 1451 640 283 44 44 chr6 113530804 113530985 -35986052 + B3A SINE B2 2 182 -34 9 1451 388 319 35 0 chr6 113531796 113531909 -35985128 - PB1D10 SINE Alu 0 117 1 9 1451 462 260 48 0 chr6 113531814 113531918 -35985119 - ID_B1 SINE B4 -46 178 70 9 1451 524 221 136 121 chr6 113531922 113532007 -35985030 - B3 SINE B2 -5 211 135 9 1451 1213 54 0 0 chr6 113532007 113532154 -35984883 + B1_Mus2 SINE Alu 1 147 0 9 1451 524 221 136 121 chr6 113532154 113532274 -35984763 - B3 SINE B2 -82 134 3 9 1451 761 99 93 62 chr6 113532353 113532482 -35984555 + B1_Mus2 SINE Alu 15 147 0 9 1451 907 147 247 0 chr6 113532574 113532744 -35984293 + B3 SINE B2 1 212 -4 9 1451 399 68 0 0 chr6 113532851 113532910 -35984127 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 1451 423 0 0 0 chr6 113532910 113532957 -35984080 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1451 307 253 11 65 chr6 113532958 113533051 -35983986 - PB1D10 SINE Alu -29 88 1 1 1451 312 278 179 50 chr6 113533752 113533953 -35983084 - ORR1E LTR MaLR -127 232 6 1 1451 216 270 81 28 chr6 113534160 113534265 -35982772 - MIRb SINE MIR -31 237 116 1 1451 759 22 0 0 chr6 113534417 113534506 -35982531 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 1451 406 273 57 24 chr6 113534508 113534632 -35982405 - ID_B1 SINE B4 -21 203 76 1 1451 283 247 225 0 chr6 113536471 113536560 -35980477 + MT2B LTR ERVL 132 240 -361 1 1451 410 194 146 64 chr6 113536498 113536608 -35980429 + B1_Mus2 SINE Alu 8 126 -21 1 1451 343 176 15 0 chr6 113538057 113538125 -35978912 + B1_Mur3 SINE Alu 67 135 -14 1 1451 4319 76 17 11 chr6 113538818 113539200 -35977837 - L1_Mus4 LINE L1 -2 6634 6257 1 1451 3201 56 5 5 chr6 113539200 113539596 -35977441 - MTA_Mm LTR MaLR 0 396 1 1 1451 4319 76 17 11 chr6 113539596 113539787 -35977250 - L1_Mus4 LINE L1 -380 6256 6057 1 1451 1966 210 50 2 chr6 113539787 113540188 -35976849 - MTC LTR MaLR -1 420 1 1 1451 698 201 15 22 chr6 113540334 113540471 -35976566 + B1_Mur2 SINE Alu 1 136 -13 1 1451 1358 76 5 32 chr6 113540744 113540934 -35976103 + B2_Mm1a SINE B2 2 186 -7 1 1451 515 267 44 7 chr6 113541410 113541546 -35975491 + B1F1 SINE Alu 1 141 -8 1 1451 820 216 103 0 chr6 113541671 113541865 -35975172 + B3 SINE B2 3 216 0 1 1451 650 137 192 8 chr6 113541890 113542015 -35975022 + B1_Mus1 SINE Alu 1 148 0 1 1451 1054 88 0 7 chr6 113542281 113542430 -35974607 - B1_Mus1 SINE Alu 0 148 1 1 1451 513 291 103 16 chr6 113542448 113542633 -35974404 - B3 SINE B2 -15 201 1 1 1451 263 311 148 9 chr6 113542683 113542832 -35974205 - MIR SINE MIR -79 183 25 1 1451 299 257 28 28 chr6 113543547 113543619 -35973418 + ID4_ SINE ID 12 83 0 1 1451 417 255 147 0 chr6 113543744 113543800 -35973237 - B1_Mur1 SINE Alu -30 119 60 1 1451 180 0 0 0 chr6 113543800 113543820 -35973217 + (CCTG)n Simple_repeat Simple_repeat 1 20 0 1 1451 417 255 147 0 chr6 113543820 113543865 -35973172 - B1_Mur1 SINE Alu -90 59 4 1 1451 408 55 0 0 chr6 113543880 113543935 -35973102 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 1 1451 751 248 38 33 chr6 113543946 113544159 -35972878 - B3 SINE B2 -2 214 1 1 1451 313 19 0 88 chr6 113544193 113544250 -35972787 + L1Md_T LINE L1 6531 6582 0 1 1451 228 197 28 83 chr6 113544412 113544484 -35972553 - LTR48 LTR ERV1 -655 132 65 1 1451 312 167 0 0 chr6 113544693 113544741 -35972296 - PB1D10 SINE Alu -16 101 54 1 1451 711 243 28 0 chr6 113544899 113545043 -35971994 + B1_Mur2 SINE Alu 2 149 0 1 1451 376 218 25 68 chr6 113545108 113545226 -35971811 + PB1D9 SINE Alu 7 119 -1 1 1451 1060 91 0 34 chr6 113545230 113545378 -35971659 + B1_Mm SINE Alu 5 147 0 1 1451 494 285 27 74 chr6 113545404 113545552 -35971485 + ID_B1 SINE B4 84 224 0 1 1451 1495 64 21 0 chr6 113545552 113545740 -35971297 + B2_Mm1a SINE B2 2 193 0 1 1451 180 0 0 0 chr6 113546175 113546195 -35970842 + (CAGTG)n Simple_repeat Simple_repeat 3 22 0 1 1451 282 250 0 24 chr6 113546447 113546529 -35970508 - B1_Mur2 SINE Alu -1 148 69 1 1451 594 252 0 9 chr6 113546560 113546676 -35970361 - RSINE1 SINE B4 -2 163 49 1 1451 650 317 16 16 chr6 113548416 113548599 -35968438 + MER5A DNA MER1_type 6 188 -1 1 1451 364 286 30 53 chr6 113548666 113548799 -35968238 + B1F2 SINE Alu 2 131 -18 1 1451 609 327 6 17 chr6 113548827 113549001 -35968036 + B3A SINE B2 5 176 -22 1 1451 338 130 130 0 chr6 113549010 113549079 -35967958 + PB1D9 SINE Alu 43 120 0 1 1451 225 83 0 0 chr6 113549454 113549490 -35967547 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1451 198 71 0 0 chr6 113549690 113549718 -35967319 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1451 379 234 74 24 chr6 113549926 113550036 -35967001 + PB1D7 SINE Alu 5 125 -2 1 1451 983 25 0 8 chr6 113551065 113551185 -35965852 + B1_Mm SINE Alu 15 133 -14 1 1451 288 0 0 0 chr6 113551186 113551218 -35965819 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1451 305 303 22 0 chr6 113551230 113551319 -35965718 + PB1D7 SINE Alu 1 91 -29 1 1451 1214 48 0 7 chr6 113551730 113551878 -35965159 + B1_Mus2 SINE Alu 1 147 0 1 1451 180 0 0 0 chr6 113551878 113551898 -35965139 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1451 1392 62 17 6 chr6 113551919 113552097 -35964940 + B2_Mm2 SINE B2 2 181 -14 1 1451 409 115 0 0 chr6 113552116 113552177 -35964860 - B2_Mm2 SINE B2 -134 61 1 1 1451 486 0 0 0 chr6 113552375 113552429 -35964608 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1451 198 0 0 0 chr6 113552516 113552538 -35964499 + (GGCTG)n Simple_repeat Simple_repeat 4 25 0 1 1451 550 155 0 0 chr6 113552665 113552749 -35964288 + B1_Mm SINE Alu 9 92 -55 1 1451 326 210 0 120 chr6 113552668 113552760 -35964277 + MT2B LTR ERVL 176 256 -345 1 1451 1881 168 80 11 chr6 113552767 113553128 -35963909 - ORR1B1 LTR MaLR -8 386 1 1 1451 295 291 0 0 chr6 113553161 113553216 -35963821 - B1F1 SINE Alu -90 59 5 1 1451 909 92 69 0 chr6 113553369 113553499 -35963538 + B1_Mus2 SINE Alu 1 139 -8 1 1451 870 10 0 0 chr6 113553499 113553598 -35963439 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 1 1451 1284 94 0 0 chr6 113553598 113553958 -35963079 + (GA)n Simple_repeat Simple_repeat 1 360 0 1 1451 200 111 28 0 chr6 113553961 113553997 -35963040 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 1 1451 459 304 87 7 chr6 113554029 113554178 -35962859 + RSINE1 SINE B4 1 161 -4 1 1451 975 116 7 13 chr6 113554197 113554346 -35962691 + B1_Mur4 SINE Alu 1 148 -2 1 1451 295 245 0 50 chr6 113555891 113555990 -35961047 + T-rich Low_complexity Low_complexity 1 94 0 1 1451 397 198 31 52 chr6 113556080 113556176 -35960861 + ID_B1 SINE B4 99 192 -32 1 1451 409 239 0 0 chr6 113556263 113556350 -35960687 + B1F SINE Alu 9 95 -25 1 1451 521 241 78 0 chr6 113556375 113556491 -35960546 + B3 SINE B2 2 126 -90 1 1451 471 239 177 0 chr6 113556561 113556691 -35960346 + RSINE1 SINE B4 4 156 -9 1 1451 309 248 70 79 chr6 113556849 113556963 -35960074 - B1F2 SINE Alu -29 120 8 1 1451 382 118 13 21 chr6 113557574 113557676 -35959361 - B2_Mm2 SINE B2 -9 186 47 1 1451 1245 92 35 0 chr6 113557704 113557877 -35959160 - B2_Mm1t SINE B2 -14 179 1 1 1451 468 194 85 28 chr6 113557961 113558067 -35958970 + PB1D7 SINE Alu 9 120 0 1 1451 331 259 12 24 chr6 113558414 113558497 -35958540 - B1_Mur1 SINE Alu 0 149 68 1 1451 210 288 15 15 chr6 113558891 113558958 -35958079 + CT-rich Low_complexity Low_complexity 3 69 0 1 1451 249 259 306 0 chr6 113559264 113559372 -35957665 - B1_Mur1 SINE Alu -8 141 1 1 1451 275 312 67 59 chr6 113560590 113560637 -35956400 + B1F SINE Alu 22 72 -77 1 1451 943 82 89 0 chr6 113560637 113560772 -35956265 + B1_Mus2 SINE Alu 1 147 0 1 1451 275 312 67 59 chr6 113560772 113560843 -35956194 + B1F SINE Alu 73 141 -8 1 1451 256 307 16 73 chr6 113560949 113561072 -35955965 + PB1D10 SINE Alu 1 116 -1 1 1451 1391 75 32 0 chr6 113561076 113561263 -35955774 + B2_Mm2 SINE B2 1 193 -2 1 1451 553 268 65 26 chr6 113561809 113561962 -35955075 + RSINE1 SINE B4 3 161 -4 1 1451 450 0 0 0 chr6 113562198 113562248 -35954789 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1451 334 359 71 22 chr6 113562266 113562491 -35954546 - B4A SINE B4 -55 237 2 1 1451 617 82 0 15 chr6 113563215 113563308 -35953729 + B1_Mus2 SINE Alu 61 149 0 1 1451 1742 156 39 83 chr6 113563310 113563440 -35953597 - ORR1D1 LTR MaLR -71 303 176 1 1451 1241 41 0 7 chr6 113563440 113563588 -35953449 - B1_Mus1 SINE Alu 0 148 2 1 1451 1742 134 35 64 chr6 113563588 113563796 -35953241 - ORR1D1 LTR MaLR -168 206 1 1 1451 3898 184 108 27 chr6 113563803 113563879 -35953158 - ORR1D1-int LTR MaLR -3 1367 1293 1 1451 639 201 21 28 chr6 113563879 113564022 -35953015 + B1_Mur2 SINE Alu 1 142 -7 1 1451 3898 184 108 27 chr6 113564022 113564796 -35952241 - ORR1D1-int LTR MaLR -78 1292 448 1 1451 229 250 130 14 chr6 113564848 113564889 -35952148 - ORR1D1 LTR MaLR -161 213 164 1 1451 276 30 0 0 chr6 113564889 113564922 -35952115 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 1451 229 250 130 14 chr6 113564922 113564949 -35952088 - ORR1D1 LTR MaLR -211 163 137 1 1451 487 257 100 0 chr6 113565092 113565232 -35951805 + Tigger5 DNA MER2_type 81 234 -2172 1 1451 294 287 0 0 chr6 113565508 113565573 -35951464 + PB1D7 SINE Alu 43 107 -42 1 1451 519 344 6 41 chr6 113567049 113567219 -35949818 + RSINE1 SINE B4 2 165 0 1 1451 1604 160 31 58 chr6 113567551 113567877 -35949160 - ORR1A4 LTR MaLR -8 321 5 1 1451 543 233 54 0 chr6 113568342 113568471 -35948566 + B1_Mur3 SINE Alu 2 137 -12 1 1451 897 140 86 95 chr6 113568602 113568823 -35948214 - URR1A DNA MER1_type 0 226 8 1 1451 787 258 64 60 chr6 113569044 113569085 -35947952 + B4A SINE B4 1 38 -254 1 1451 1353 50 71 16 chr6 113569085 113569267 -35947770 + B2_Mm2 SINE B2 2 193 -2 1 1451 787 258 64 60 chr6 113569267 113569506 -35947531 + B4A SINE B4 39 282 -10 1 1451 775 194 43 0 chr6 113570133 113570272 -35946765 - B1_Mur1 SINE Alu 0 149 5 1 1451 1234 123 37 0 chr6 113570350 113570537 -35946500 + B2_Mm2 SINE B2 1 194 -1 1 1451 1535 222 116 40 chr6 113570587 113571103 -35945934 - RLTR18 LTR ERVK 0 512 3 1 1451 504 0 0 0 chr6 113571105 113571161 -35945876 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1451 402 254 156 7 chr6 113571166 113571301 -35945736 - RSINE1 SINE B4 -8 157 3 1 1451 722 201 67 61 chr6 113571331 113571511 -35945526 - B3A SINE B2 -16 182 2 1 1451 745 212 137 35 chr6 113571520 113571733 -35945304 - B3 SINE B2 -2 214 6 1 1451 888 190 29 96 chr6 113571736 113571945 -35945092 - B3A SINE B2 -2 196 2 2 1451 181 289 184 0 chr6 113572113 113572189 -35944848 + L2b LINE L2 3203 3292 -83 2 1451 769 253 23 23 chr6 113572367 113572541 -35944496 + B3A SINE B2 5 178 -20 2 1451 1091 44 73 0 chr6 113572575 113572712 -35944325 - B1_Mus1 SINE Alu 0 148 2 2 1451 426 329 20 14 chr6 113572815 113572963 -35944074 + B1F1 SINE Alu 1 149 0 2 1451 759 167 65 0 chr6 113573167 113573305 -35943732 + B1_Mus1 SINE Alu 2 148 0 2 1451 28 0 0 0 chr6 113573377 113573405 -35943632 + AT_rich Low_complexity Low_complexity 1 28 0 2 1451 561 225 54 8 chr6 113573407 113573537 -35943500 + B1F2 SINE Alu 14 149 0 2 1451 496 220 101 0 chr6 113573553 113573662 -35943375 + B1_Mur1 SINE Alu 21 140 -9 2 1451 795 160 1 34 chr6 113573674 113573822 -35943215 + B1_Mur4 SINE Alu 6 150 0 2 1451 280 176 42 42 chr6 113573890 113573985 -35943052 + (CCCCG)n Simple_repeat Simple_repeat 5 99 0 2 1451 272 217 38 30 chr6 113575149 113575234 -35941803 + B1_Mus2 SINE Alu 25 118 -9 2 1451 423 207 26 61 chr6 113575250 113575362 -35941675 - B1_Mm SINE Alu -36 113 1 2 1451 353 237 92 10 chr6 113575364 113575462 -35941575 + B3A SINE B2 36 141 -57 2 1451 1714 196 36 60 chr6 113575482 113575867 -35941170 + ORR1C1 LTR MaLR 3 378 0 2 1451 225 189 63 67 chr6 113576006 113576078 -35940959 + PB1D10 SINE Alu 16 100 -27 2 1451 731 234 89 37 chr6 113576219 113576410 -35940627 - B3 SINE B2 -15 201 1 2 1451 216 0 0 0 chr6 113576462 113576486 -35940551 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1451 706 138 88 16 chr6 113576486 113576611 -35940426 - B1_Mus1 SINE Alu -8 140 7 2 1451 295 252 121 128 chr6 113576611 113576627 -35940410 - B4 SINE B4 -74 218 79 2 1451 1166 62 0 27 chr6 113576743 113576893 -35940144 - B1_Mus1 SINE Alu 0 148 3 2 1451 338 192 0 0 chr6 113576953 113577005 -35940032 - ID4_ SINE ID -13 70 19 2 1451 421 303 0 35 chr6 113577051 113577164 -35939873 + PB1D10 SINE Alu 4 112 -5 2 1451 1232 48 0 0 chr6 113577170 113577316 -35939721 + B1_Mus2 SINE Alu 2 147 0 2 1451 476 286 56 28 chr6 113578231 113578375 -35938662 - B1F SINE Alu 0 149 2 2 1451 258 296 16 80 chr6 113578608 113578733 -35938304 + PB1D10 SINE Alu 1 117 0 2 1451 189 0 0 0 chr6 113578815 113578836 -35938201 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1451 551 63 25 0 chr6 113578930 113579009 -35938028 + (TTTC)n Simple_repeat Simple_repeat 2 82 0 2 1451 283 170 0 36 chr6 113579038 113579093 -35937944 - ID_B1 SINE B4 0 224 172 2 1451 265 186 47 31 chr6 113579093 113579109 -35937928 - PB1D9 SINE Alu 0 120 46 2 1451 270 287 176 0 chr6 113580145 113580253 -35936784 - ID_B1 SINE B4 -2 222 96 2 1451 226 268 62 125 chr6 113580253 113580268 -35936769 - PB1D7 SINE Alu 0 115 1 2 1451 24 0 0 0 chr6 113580683 113580707 -35936330 + AT_rich Low_complexity Low_complexity 1 24 0 2 1451 231 189 19 0 chr6 113580880 113580933 -35936104 - L1M5 LINE L1 -202 5922 5869 2 1451 574 185 47 78 chr6 113580970 113581099 -35935938 - B1_Mm SINE Alu 0 147 23 2 1451 39 0 0 0 chr6 113581646 113581685 -35935352 + AT_rich Low_complexity Low_complexity 1 39 0 2 1451 21 0 0 0 chr6 113581843 113581864 -35935173 + AT_rich Low_complexity Low_complexity 1 21 0 2 1451 771 263 22 11 chr6 113582051 113582232 -35934805 + B3A SINE B2 2 184 -14 2 1451 3316 151 111 19 chr6 113582233 113582880 -35934157 - RMER1B Other Other -1 1065 359 2 1451 1653 216 47 25 chr6 113582937 113583345 -35933692 - RMER1B Other Other -550 516 100 2 1451 401 159 14 0 chr6 113583345 113583414 -35933623 + B1_Mur3 SINE Alu 80 149 0 2 1451 299 237 0 50 chr6 113583541 113583621 -35933416 + ID4 SINE ID 2 77 -6 2 1451 193 26 128 0 chr6 113583749 113583788 -35933249 + T-rich Low_complexity Low_complexity 2 45 0 2 1451 1209 48 0 14 chr6 113583794 113583942 -35933095 - B1_Mus2 SINE Alu 0 147 2 2 1451 781 201 179 72 chr6 113583943 113584051 -35932986 + MTD LTR MaLR 5 99 -320 2 1451 207 0 0 0 chr6 113584051 113584074 -35932963 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1451 781 201 179 72 chr6 113584074 113584228 -35932809 + MTD LTR MaLR 100 294 -125 2 1451 1085 50 41 28 chr6 113584474 113584619 -35932418 - B1_Mus2 SINE Alu 0 147 1 2 1451 343 339 16 1 chr6 113584623 113584756 -35932281 - PB1D10 SINE Alu -2 147 10 2 1451 240 185 34 85 chr6 113584796 113584855 -35932182 - PB1 SINE Alu -40 87 32 2 1451 615 273 82 21 chr6 113584910 113585101 -35931936 + B3 SINE B2 1 216 0 2 1451 455 155 70 33 chr6 113585130 113585238 -35931799 + B1_Mur1 SINE Alu 7 148 -1 2 1451 346 296 22 81 chr6 113585272 113585408 -35931629 - RSINE1 SINE B4 0 165 38 2 1451 2475 48 9 6 chr6 113585408 113585726 -35931311 + ORR1A2 LTR MaLR 1 319 -8 2 1451 549 273 24 94 chr6 113585814 113585984 -35931053 - RSINE1 SINE B4 0 165 8 2 1451 1278 34 0 0 chr6 113586018 113586164 -35930873 + B1_Mus2 SINE Alu 2 147 0 2 1451 270 0 0 0 chr6 113586164 113586194 -35930843 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1451 234 0 0 0 chr6 113586227 113586253 -35930784 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1451 237 304 0 55 chr6 113586263 113586336 -35930701 - ID4 SINE ID -13 70 2 2 1451 351 272 96 9 chr6 113586342 113586457 -35930580 - PB1 SINE Alu -1 126 2 2 1451 887 128 15 8 chr6 113586521 113586655 -35930382 - B1_Mus1 SINE Alu -13 135 1 2 1451 471 234 13 129 chr6 113586907 113587091 -35929946 + ID_B1 SINE B4 6 169 -55 2 1451 583 148 168 0 chr6 113587009 113587110 -35929927 + B1_Mur4 SINE Alu 11 128 -22 2 1451 962 223 64 0 chr6 113587194 113587396 -35929641 - B3 SINE B2 0 216 2 2 1451 1279 57 55 28 chr6 113587414 113587596 -35929441 - B2_Mm2 SINE B2 -7 188 2 2 1451 899 131 7 0 chr6 113587656 113587793 -35929244 - B1_Mus2 SINE Alu 0 147 10 2 1451 1250 48 0 0 chr6 113587822 113587968 -35929069 - B1_Mus2 SINE Alu 0 147 2 2 1451 437 218 91 70 chr6 113587973 113588116 -35928921 - B1F1 SINE Alu -1 148 3 2 1451 1220 61 0 0 chr6 113589010 113589158 -35927879 + B1_Mus1 SINE Alu 1 148 0 2 1451 225 0 0 0 chr6 113589167 113589192 -35927845 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 2 1451 640 223 72 0 chr6 113589250 113589389 -35927648 - B1_Mur3 SINE Alu 0 149 1 2 1451 330 216 26 51 chr6 113589398 113589476 -35927561 - ID4_ SINE ID 0 83 8 2 1451 182 37 37 0 chr6 113589503 113589530 -35927507 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2 1451 312 261 16 40 chr6 113589530 113589618 -35927419 - PB1D10 SINE Alu -18 99 14 2 1451 463 185 294 0 chr6 113589658 113589777 -35927260 - ID_B1 SINE B4 -17 207 54 2 1451 1108 83 21 0 chr6 113589885 113590029 -35927008 - B1_Mus1 SINE Alu 0 148 2 2 1451 368 266 0 0 chr6 113590056 113590142 -35926895 - ID4_ SINE ID -56 96 11 2 1451 664 239 43 7 chr6 113590184 113590323 -35926714 - ID_B1 SINE B4 -2 222 79 2 1451 306 316 42 0 chr6 113590601 113590696 -35926341 + BC1_Mm scRNA scRNA 9 107 -45 2 1451 243 276 13 38 chr6 113590710 113590789 -35926248 + MER20 DNA MER1_type 4 80 -139 2 1451 246 239 91 5 chr6 113591236 113591315 -35925722 - PB1D7 SINE Alu -5 112 24 2 1451 240 263 41 4 chr6 113591525 113591611 -35925426 + ID4_ SINE ID 3 95 -57 2 1451 207 167 0 0 chr6 113591611 113591653 -35925384 + GA-rich Low_complexity Low_complexity 2 43 0 2 1451 308 304 9 39 chr6 113591677 113591782 -35925255 + PB1D10 SINE Alu 16 117 0 2 1451 313 301 58 29 chr6 113591927 113592064 -35924973 - L1MB5 LINE L1 -218 5956 5816 2 1451 258 106 0 0 chr6 113592208 113592255 -35924782 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 2 1451 1065 128 0 0 chr6 113592258 113592406 -35924631 - B1_Mus1 SINE Alu 0 148 1 2 1451 234 91 0 0 chr6 113592412 113592445 -35924592 + (T)n Simple_repeat Simple_repeat 1 33 0 2 1451 1299 20 0 0 chr6 113592445 113592591 -35924446 - B1_Mm SINE Alu 0 147 2 2 1451 617 285 29 6 chr6 113592595 113592864 -35924173 - L1MB5 LINE L1 -357 5822 5543 2 1451 531 78 0 0 chr6 113593062 113593139 -35923898 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 1451 243 61 0 0 chr6 113593602 113593635 -35923402 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2 1451 1202 61 0 13 chr6 113593638 113593788 -35923249 - B1_Mus1 SINE Alu 0 148 1 2 1451 276 228 83 60 chr6 113593888 113593972 -35923065 + MIR SINE MIR 62 147 -61 2 1451 262 276 73 55 chr6 113594189 113594354 -35922683 - MIR3 SINE MIR -40 168 1 2 1451 316 219 11 68 chr6 113595422 113595510 -35921527 - ID4 SINE ID 0 83 1 2 1451 687 202 0 0 chr6 113595721 113595840 -35921197 + PB1D9 SINE Alu 1 119 -1 2 1451 272 250 97 0 chr6 113595884 113595956 -35921081 + ID4 SINE ID 2 80 -3 2 1451 1220 54 0 7 chr6 113596144 113596293 -35920744 - B1_Mus1 SINE Alu 0 148 1 2 1451 875 180 0 0 chr6 113596303 113596442 -35920595 - B1_Mur1 SINE Alu -9 140 2 2 1451 723 200 0 0 chr6 113596667 113596872 -35920165 + (TA)n Simple_repeat Simple_repeat 1 205 0 2 1451 432 305 17 0 chr6 113596900 113597018 -35920019 + PB1D7 SINE Alu 1 120 0 2 1451 26 30 0 0 chr6 113597946 113597979 -35919058 + AT_rich Low_complexity Low_complexity 1 33 0 3 1451 645 241 35 28 chr6 113597985 113598130 -35918907 + RSINE1 SINE B4 20 165 0 3 1451 230 338 38 0 chr6 113598315 113598395 -35918642 + ID SINE ID 1 83 -141 3 1451 683 252 8 0 chr6 113599273 113599404 -35917633 + ID_B1 SINE B4 87 218 -6 3 1451 462 222 0 64 chr6 113599683 113599808 -35917229 + PB1D9 SINE Alu 2 118 -2 3 1451 1171 42 0 0 chr6 113599833 113599975 -35917062 + B1_Mus2 SINE Alu 6 147 0 3 1451 204 125 0 0 chr6 113600554 113600586 -35916451 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1451 288 256 51 0 chr6 113600586 113600664 -35916373 - ID4 SINE ID 0 83 2 3 1451 386 167 9 0 chr6 113600671 113600779 -35916258 + (TG)n Simple_repeat Simple_repeat 1 109 0 3 1451 795 197 8 0 chr6 113600784 113600916 -35916121 - B1_Mur3 SINE Alu -15 134 2 3 1451 1072 175 95 0 chr6 113600968 113601157 -35915880 - B3 SINE B2 0 216 10 3 1451 484 269 0 9 chr6 113601640 113601756 -35915281 + PB1D10 SINE Alu 2 116 -1 3 1451 418 264 83 51 chr6 113601780 113601936 -35915101 + B4A SINE B4 50 210 -82 3 1451 778 164 67 100 chr6 113601948 113602158 -35914879 + URR1B DNA MER1_type 9 211 -14 3 1451 225 0 0 0 chr6 113602188 113602213 -35914824 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1451 462 36 0 0 chr6 113602242 113602298 -35914739 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1451 364 309 35 28 chr6 113602412 113602555 -35914482 - MLT1J LTR MaLR -264 248 105 3 1451 592 260 14 14 chr6 113603281 113603429 -35913608 - ID_B1 SINE B4 -53 171 24 3 1451 261 139 0 0 chr6 113603431 113603474 -35913563 + (TTA)n Simple_repeat Simple_repeat 2 44 0 3 1451 711 113 7 108 chr6 113603477 113603616 -35913421 - B1_Mur3 SINE Alu -2 147 23 3 1451 249 33 0 0 chr6 113603616 113603646 -35913391 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1451 825 261 182 47 chr6 113603653 113603971 -35913066 - MTEa LTR MaLR 0 379 19 3 1451 342 239 246 0 chr6 113604621 113604735 -35912302 - MIRb SINE MIR -95 181 39 3 1451 470 187 88 0 chr6 113604809 113604900 -35912137 + ID_B1 SINE B4 115 213 -11 3 1451 344 200 131 65 chr6 113604900 113604916 -35912121 + B1F SINE Alu 34 147 -2 3 1451 255 277 97 72 chr6 113605495 113605725 -35911312 + L2a LINE L2 2899 3131 -295 3 1451 280 204 0 20 chr6 113605985 113606035 -35911002 + B1_Mus2 SINE Alu 1 49 -98 3 1451 271 250 70 42 chr6 113606035 113606053 -35910984 + ID_B1 SINE B4 82 151 -73 3 1451 557 163 0 11 chr6 113606132 113606225 -35910812 + B1_Mus2 SINE Alu 49 140 -7 3 1451 861 194 157 26 chr6 113606231 113606270 -35910767 - B3 SINE B2 0 216 183 3 1451 315 0 0 0 chr6 113606270 113606305 -35910732 + (TATG)n Simple_repeat Simple_repeat 4 38 0 3 1451 861 194 157 26 chr6 113606305 113606456 -35910581 - B3 SINE B2 -34 182 3 3 1451 279 0 0 0 chr6 113606478 113606509 -35910528 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1451 1255 34 7 0 chr6 113606512 113606658 -35910379 - B1_Mus2 SINE Alu 0 147 1 3 1451 369 0 0 0 chr6 113606696 113606737 -35910300 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1451 456 250 0 0 chr6 113607273 113607621 -35909416 + (TG)n Simple_repeat Simple_repeat 1 348 0 3 1451 750 274 44 10 chr6 113607670 113607873 -35909164 - B4A SINE B4 -81 211 2 3 1451 537 202 113 12 chr6 113607879 113608015 -35909022 - B1F SINE Alu -7 142 1 3 1451 614 250 62 12 chr6 113608166 113608328 -35908709 - B3A SINE B2 -26 172 3 3 1451 301 222 32 0 chr6 113608834 113608897 -35908140 + ID SINE ID 12 76 -148 3 1451 424 296 35 84 chr6 113608945 113608983 -35908054 - B2_Mm1t SINE B2 0 193 153 3 1451 252 86 0 0 chr6 113608983 113609018 -35908019 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 1451 660 237 26 19 chr6 113609018 113609182 -35907855 - B3 SINE B2 -41 152 1 3 1451 902 185 0 27 chr6 113609182 113609332 -35907705 - B1_Mur3 SINE Alu -2 147 2 3 1451 426 239 0 22 chr6 113609334 113609424 -35907613 + ID_B1 SINE B4 137 224 0 3 1451 389 244 11 0 chr6 113609518 113609608 -35907429 - PB1 SINE Alu -4 123 33 3 1451 180 0 0 0 chr6 113609877 113609897 -35907140 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 3 1451 371 115 0 0 chr6 113610020 113610072 -35906965 - ORR1D2 LTR MaLR -2 368 317 3 1451 438 20 0 0 chr6 113610073 113610124 -35906913 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1451 913 149 0 33 chr6 113610160 113610313 -35906724 + B1_Mur3 SINE Alu 1 148 -1 3 1451 474 159 0 0 chr6 113610319 113610407 -35906630 + GA-rich Low_complexity Low_complexity 3 90 0 3 1451 1102 269 39 8 chr6 113610439 113610697 -35906340 - ORR1D2 LTR MaLR -104 266 1 3 1451 360 208 53 62 chr6 113610697 113610809 -35906228 - ID_B1 SINE B4 -16 208 98 3 1451 351 0 0 0 chr6 113611896 113611935 -35905102 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1451 225 258 33 50 chr6 113612109 113612239 -35904798 - MIRm SINE MIR -37 239 110 3 1451 324 340 61 30 chr6 113612260 113612424 -35904613 + B4A SINE B4 4 172 -120 3 1451 297 0 0 0 chr6 113612503 113612536 -35904501 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1451 858 181 59 9 chr6 113613142 113613307 -35903730 + B3A SINE B2 1 160 -38 3 1451 483 87 0 0 chr6 113613307 113613376 -35903661 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 1451 608 200 48 106 chr6 113613376 113613417 -35903620 + B2_Mm2 SINE B2 156 194 -1 3 1451 931 178 0 0 chr6 113613697 113613843 -35903194 - B1_Mur2 SINE Alu 0 149 4 3 1451 921 60 0 0 chr6 113613922 113614039 -35902998 - B1_Mus1 SINE Alu 0 148 32 3 1451 283 316 52 103 chr6 113613967 113614134 -35902903 - MT2B2 LTR ERVL -327 257 97 3 1451 379 212 51 171 chr6 113614039 113614096 -35902941 - B4 SINE B4 -67 223 71 3 1451 468 0 0 0 chr6 113614134 113614186 -35902851 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1451 283 316 52 103 chr6 113614186 113614212 -35902825 - MT2B2 LTR ERVL -488 96 74 3 1451 212 295 0 47 chr6 113614726 113614790 -35902247 - ID4 SINE ID -8 75 15 3 1451 22 0 0 0 chr6 113614937 113614959 -35902078 + AT_rich Low_complexity Low_complexity 1 22 0 3 1451 1272 191 5 5 chr6 113614965 113615181 -35901856 - B3 SINE B2 0 216 1 3 1451 1007 179 75 25 chr6 113615183 113615383 -35901654 - B3 SINE B2 -6 210 1 3 1451 204 260 176 14 chr6 113615388 113615462 -35901575 - MIRc SINE MIR -118 150 65 3 1451 231 36 0 0 chr6 113615462 113615490 -35901547 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1451 200 330 107 20 chr6 113615518 113615642 -35901395 - MIR SINE MIR -112 164 24 3 1451 394 286 112 8 chr6 113615890 113616024 -35901013 - B3 SINE B2 -3 213 66 3 1451 471 276 9 0 chr6 113616105 113616210 -35900827 - B3 SINE B2 -110 106 1 3 1451 198 0 0 0 chr6 113616243 113616265 -35900772 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1451 370 278 0 11 chr6 113616298 113616389 -35900648 + PB1D10 SINE Alu 3 92 -25 3 1451 219 304 41 55 chr6 113616423 113616496 -35900541 + BC1_Mm scRNA scRNA 1 72 -80 3 1451 2571 118 99 21 chr6 113616505 113616937 -35900100 - RMER4A LTR ERVK 0 466 1 3 1451 226 295 0 0 chr6 113616981 113617042 -35899995 - BC1_Mm scRNA scRNA -78 74 14 3 1451 492 18 0 0 chr6 113617441 113617498 -35899539 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1451 343 236 14 0 chr6 113618038 113618110 -35898927 + B1_Mus1 SINE Alu 1 73 -75 3 1451 751 158 7 7 chr6 113618112 113618259 -35898778 + GA-rich Low_complexity Low_complexity 2 148 0 3 1451 311 191 69 44 chr6 113618331 113618423 -35898614 + B1_Mur2 SINE Alu 63 149 0 3 1451 216 97 0 0 chr6 113618423 113618454 -35898583 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1451 353 114 64 16 chr6 113619110 113619235 -35897802 + (TG)n Simple_repeat Simple_repeat 1 131 0 3 1451 315 244 108 118 chr6 113619369 113619564 -35897473 + B4 SINE B4 31 223 -69 3 1451 618 103 250 0 chr6 113619450 113619566 -35897471 + B1_Mur4 SINE Alu 6 150 0 3 1451 340 301 0 46 chr6 113619661 113619748 -35897289 - MER2 DNA MER2_type -20 325 243 3 1451 332 257 9 87 chr6 113620661 113620776 -35896261 - PB1D10 SINE Alu 0 117 12 3 1451 241 89 22 22 chr6 113620789 113620835 -35896202 + (TTTC)n Simple_repeat Simple_repeat 1 46 0 3 1451 1075 65 58 0 chr6 113620838 113620977 -35896060 - B1_Mus1 SINE Alu -1 147 1 3 1451 1114 199 63 5 chr6 113621323 113621530 -35895507 - ID_B1 SINE B4 0 224 6 3 1451 381 325 0 9 chr6 113621531 113621646 -35895391 - PB1D10 SINE Alu -2 115 2 3 1451 578 239 0 0 chr6 113621678 113621791 -35895246 + B1_Mur1 SINE Alu 21 133 -16 3 1451 506 171 135 0 chr6 113621964 113622075 -35894962 + B1_Mus1 SINE Alu 23 148 0 3 1451 1105 89 105 23 chr6 113622088 113622260 -35894777 + B2_Mm2 SINE B2 1 186 -9 3 1451 300 53 0 0 chr6 113622346 113622384 -35894653 + (TATG)n Simple_repeat Simple_repeat 1 38 0 3 1451 485 246 131 0 chr6 113622391 113622521 -35894516 - RSINE1 SINE B4 -17 148 2 3 1451 242 270 144 59 chr6 113623344 113623462 -35893575 - MLT1A LTR MaLR -246 128 1 3 1451 534 309 45 6 chr6 113623470 113623646 -35893391 - MIRb SINE MIR -72 196 14 3 1451 441 316 114 46 chr6 113623788 113623846 -35893191 + Cheshire DNA MER1_type 19 78 -2342 3 1451 216 0 0 0 chr6 113623846 113623870 -35893167 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 3 1451 946 153 0 0 chr6 113623870 113624007 -35893030 - B1_Mur3 SINE Alu -12 137 1 3 1451 890 150 13 33 chr6 113624009 113624161 -35892876 - B1_Mur1 SINE Alu 0 149 1 3 1451 441 316 114 46 chr6 113624161 113624423 -35892614 + Cheshire DNA MER1_type 79 364 -2056 3 1451 219 241 148 0 chr6 113624505 113624559 -35892478 + B1F SINE Alu 2 63 -86 3 1451 213 224 72 29 chr6 113624815 113624884 -35892153 - MIR SINE MIR -111 97 26 3 1451 1450 67 0 6 chr6 113625045 113625226 -35891811 + B2_Mm2 SINE B2 1 180 -15 3 1451 183 42 0 0 chr6 113625226 113625250 -35891787 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1451 21 57 0 0 chr6 113625866 113625901 -35891136 + AT_rich Low_complexity Low_complexity 1 35 0 4 1451 782 245 55 20 chr6 113625912 113626112 -35890925 - ID_B1 SINE B4 -14 210 4 4 1451 277 273 54 58 chr6 113626137 113626271 -35890766 - MIRb SINE MIR -43 165 38 4 1451 847 77 26 0 chr6 113626283 113626400 -35890637 + PB1D9 SINE Alu 1 120 0 4 1451 378 0 0 0 chr6 113626407 113626449 -35890588 + (TAA)n Simple_repeat Simple_repeat 2 43 0 4 1451 1215 93 5 54 chr6 113626700 113626904 -35890133 + B2_Mm2 SINE B2 2 195 0 4 1451 202 268 0 0 chr6 113627002 113627043 -35889994 + C-rich Low_complexity Low_complexity 1 41 0 4 1451 217 185 35 69 chr6 113627753 113627811 -35889226 - PB1D10 SINE Alu 0 117 62 4 1451 594 190 40 40 chr6 113627806 113627932 -35889105 - B1F SINE Alu -22 127 2 4 1451 569 268 43 7 chr6 113627963 113628102 -35888935 + RSINE1 SINE B4 3 146 -19 4 1451 21 0 0 0 chr6 113628188 113628209 -35888828 + AT_rich Low_complexity Low_complexity 1 21 0 4 1451 868 274 60 53 chr6 113628981 113629266 -35887771 - B4 SINE B4 0 292 6 4 1451 260 300 55 11 chr6 113629269 113629290 -35887747 - ID_B1 SINE B4 -124 100 8 4 1451 338 265 0 0 chr6 113629290 113629358 -35887679 - tRNA-Ala-GCA tRNA tRNA -7 68 1 4 1451 353 264 62 54 chr6 113629362 113629474 -35887563 - PB1D7 SINE Alu -7 113 1 4 1451 312 261 25 138 chr6 113629484 113629538 -35887499 + MT2B LTR ERVL 119 154 -447 4 1451 644 239 36 0 chr6 113629538 113629676 -35887361 + B1F SINE Alu 1 143 -6 4 1451 243 231 0 3 chr6 113630538 113630599 -35886438 + PB1 SINE Alu 75 149 0 4 1451 809 214 14 0 chr6 113630795 113630940 -35886097 + B1_Mur3 SINE Alu 2 148 -1 4 1451 219 114 0 0 chr6 113630940 113630975 -35886062 + (TAAG)n Simple_repeat Simple_repeat 1 35 0 4 1451 204 268 0 0 chr6 113631025 113631096 -35885941 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 1451 395 271 78 57 chr6 113631098 113631239 -35885798 - RSINE1 SINE B4 -2 163 20 4 1451 245 29 29 0 chr6 113631684 113631718 -35885319 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1451 827 191 0 7 chr6 113631718 113631860 -35885177 - B1_Mur4 SINE Alu -9 141 1 4 1451 237 221 0 117 chr6 113632021 113632098 -35884939 + PB1D10 SINE Alu 50 117 0 4 1451 211 60 56 69 chr6 113632102 113632174 -35884863 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 4 1451 1156 70 0 0 chr6 113632188 113632330 -35884707 + B1_Mus1 SINE Alu 2 143 -5 4 1451 201 39 0 0 chr6 113632348 113632374 -35884663 + (CAAAC)n Simple_repeat Simple_repeat 3 28 0 4 1451 691 243 7 0 chr6 113632380 113632520 -35884517 + RSINE1 SINE B4 2 142 -23 4 1451 360 0 0 0 chr6 113632532 113632572 -35884465 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1451 48 18 0 0 chr6 113632574 113632629 -35884408 + AT_rich Low_complexity Low_complexity 1 55 0 4 1451 181 0 33 33 chr6 113633000 113633030 -35884007 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 4 1451 360 278 17 51 chr6 113633030 113633178 -35883859 - PB1D10 SINE Alu -1 148 1 4 1451 1202 36 0 0 chr6 113633331 113633468 -35883569 - B1_Mus2 SINE Alu -6 141 5 4 1451 408 275 72 18 chr6 113634010 113634121 -35882916 - PB1 SINE Alu -10 117 1 4 1451 1408 240 31 56 chr6 113634143 113634800 -35882237 - Lx6 LINE L1 -26 7434 6455 4 1451 404 298 10 21 chr6 113634896 113634992 -35882045 - PB1D10 SINE Alu -13 104 10 4 1451 290 337 38 19 chr6 113634905 113635011 -35882026 - ID_B1 SINE B4 -48 176 69 4 1451 446 276 172 0 chr6 113635136 113635281 -35881756 - ID_B1 SINE B4 -54 170 1 4 1451 246 62 0 0 chr6 113635388 113635420 -35881617 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 4 1451 738 258 63 26 chr6 113635754 113635923 -35881114 + B3A SINE B2 1 181 -17 4 1451 264 30 0 0 chr6 113635923 113635956 -35881081 + (CATA)n Simple_repeat Simple_repeat 4 36 0 4 1451 738 258 63 26 chr6 113635956 113635977 -35881060 + B3A SINE B2 182 198 0 4 1451 777 226 34 78 chr6 113635979 113636185 -35880852 + B3A SINE B2 1 197 -1 4 1451 213 39 0 0 chr6 113636187 113636213 -35880824 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1451 1058 63 13 77 chr6 113636213 113636368 -35880669 - B1_Mus1 SINE Alu -2 146 2 4 1451 301 281 146 0 chr6 113637829 113637918 -35879119 - MLT1J LTR MaLR -195 317 216 4 1451 841 216 48 11 chr6 113637942 113638129 -35878908 - B3 SINE B2 -1 215 22 4 1451 813 249 12 0 chr6 113638168 113638341 -35878696 - B3A SINE B2 -22 176 2 4 1451 549 80 0 0 chr6 113638560 113638635 -35878402 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 4 1451 229 179 0 0 chr6 113638635 113638674 -35878363 + GA-rich Low_complexity Low_complexity 1 39 0 4 1451 1158 107 0 0 chr6 113638678 113638855 -35878182 + (GGA)n Simple_repeat Simple_repeat 2 178 0 4 1451 427 269 116 34 chr6 113638968 113639114 -35877923 - RSINE1 SINE B4 0 165 8 4 1451 479 275 28 0 chr6 113639129 113639238 -35877799 - PB1D7 SINE Alu 0 120 9 4 181 780 197 13 13 chr6 113639408 113639557 -35877480 + B1_Mur3 SINE Alu 1 149 0 4 1452 633 250 150 0 chr6 113639681 113639821 -35877216 - RSINE1 SINE B4 -2 163 3 4 1452 225 289 69 49 chr6 113639906 113640008 -35877029 + B1F SINE Alu 37 140 -9 4 1452 644 275 118 41 chr6 113640240 113640677 -35876360 - RLTR28B LTR ERVL 0 524 19 4 1452 1245 54 0 0 chr6 113641382 113641529 -35875508 - B1_Mm SINE Alu 0 147 1 4 1452 924 214 77 20 chr6 113641599 113641795 -35875242 - B3 SINE B2 -9 207 1 4 1452 259 85 43 0 chr6 113641870 113641917 -35875120 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1452 307 272 85 18 chr6 113641944 113641983 -35875054 + YREP_Mm Unknown Unknown 118 293 -1519 4 1452 605 192 0 48 chr6 113641983 113642109 -35874928 - ID_B1 SINE B4 0 224 105 4 1452 304 336 95 34 chr6 113642110 113642258 -35874779 + RSINE1 SINE B4 4 160 -5 4 1452 728 258 88 22 chr6 113642753 113643026 -35874011 + RMER17C-int LTR ERVK 2948 3238 0 4 1452 264 302 65 65 chr6 113643132 113643348 -35873689 + RMER17C LTR ERVK 128 343 -67 4 1452 1300 20 0 0 chr6 113644783 113644930 -35872107 - B1_Mm SINE Alu 0 147 1 4 1452 360 0 0 0 chr6 113645209 113645249 -35871788 + (TATG)n Simple_repeat Simple_repeat 2 41 0 4 1452 803 201 0 45 chr6 113645519 113645675 -35871362 + B1_Mur4 SINE Alu 2 150 0 4 1452 643 289 42 31 chr6 113645752 113645945 -35871092 + MTEa LTR MaLR 1 195 -184 4 1452 258 276 18 79 chr6 113646037 113646151 -35870886 - PB1D10 SINE Alu 0 117 11 4 1452 218 225 60 36 chr6 113646249 113646332 -35870705 - PB1D10 SINE Alu -9 108 24 4 1452 207 200 0 0 chr6 113646332 113646367 -35870670 + polypyrimidine Low_complexity Low_complexity 2 36 0 4 1452 487 271 98 0 chr6 113646367 113646500 -35870537 - B1F SINE Alu 0 149 4 4 1452 24 0 0 0 chr6 113646750 113646774 -35870263 + AT_rich Low_complexity Low_complexity 1 24 0 4 1452 30 69 0 0 chr6 113647259 113647317 -35869720 + GC_rich Low_complexity Low_complexity 1 58 0 4 1452 183 80 0 0 chr6 113647404 113647429 -35869608 + (CCGCG)n Simple_repeat Simple_repeat 4 28 0 4 1452 207 275 105 42 chr6 113648287 113648382 -35868655 - MER5B DNA MER1_type -4 174 74 4 1452 386 280 174 23 chr6 113648506 113648678 -35868359 + B3A SINE B2 1 198 0 4 1452 306 167 250 0 chr6 113648800 113648896 -35868141 - PB1D9 SINE Alu 0 120 1 4 1452 226 242 62 31 chr6 113649035 113649099 -35867938 - L2a LINE L2 -39 3387 3322 4 1452 519 279 71 0 chr6 113649268 113649408 -35867629 - ID_B1 SINE B4 -3 221 72 4 1452 186 43 0 0 chr6 113649478 113649501 -35867536 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4 1452 1206 57 0 0 chr6 113649505 113649646 -35867391 - B1_Mus2 SINE Alu -6 141 1 4 1452 569 203 34 32 chr6 113649646 113649799 -35867238 - B3 SINE B2 -2 193 40 4 1452 220 214 48 0 chr6 113650641 113650683 -35866354 - ID4 SINE ID -29 54 11 4 1452 1134 103 0 0 chr6 113650956 113651101 -35865936 - B1_Mus2 SINE Alu 0 147 3 4 1452 569 289 49 0 chr6 113651153 113651295 -35865742 - B1F1 SINE Alu 0 149 1 4 1452 225 246 43 14 chr6 113653066 113653136 -35863901 - MLT1J LTR MaLR -9 503 432 4 1452 407 103 14 8 chr6 113653220 113653326 -35863711 - B2_Mm2 SINE B2 -4 191 47 4 1452 1345 85 11 0 chr6 113653392 113653568 -35863469 - B2_Mm1t SINE B2 -14 179 2 4 1452 270 439 6 17 chr6 113653631 113653805 -35863232 - MLT1J LTR MaLR -255 257 86 4 1452 541 180 22 0 chr6 113654995 113655084 -35861953 - PB1D9 SINE Alu -13 107 17 4 1452 328 315 18 0 chr6 113655094 113655205 -35861832 - PB1D10 SINE Alu 0 117 5 4 1452 266 347 0 14 chr6 113655264 113655337 -35861700 - ID4_ SINE ID -4 79 8 4 1452 194 0 39 0 chr6 113655381 113655407 -35861630 + (TTTAA)n Simple_repeat Simple_repeat 2 28 0 4 1452 502 339 28 17 chr6 113655411 113655588 -35861449 - B3A SINE B2 -16 182 4 4 1452 777 131 70 35 chr6 113655631 113655773 -35861264 - B1_Mus1 SINE Alu 0 148 2 4 1452 366 228 59 10 chr6 113655854 113655956 -35861081 - ID_B1 SINE B4 -1 223 117 4 1452 312 246 0 14 chr6 113655978 113656048 -35860989 - HAL1b LINE L1 0 2009 1941 4 1452 378 107 0 0 chr6 113656244 113656300 -35860737 + (TATG)n Simple_repeat Simple_repeat 4 59 0 4 1452 1211 204 124 8 chr6 113656594 113656861 -35860176 - MTD LTR MaLR -121 298 1 4 1452 411 219 64 37 chr6 113657621 113657730 -35859307 - PB1D7 SINE Alu -8 112 1 5 1452 562 252 68 16 chr6 113657975 113658135 -35858902 - ID_B1 SINE B4 -46 246 82 5 1452 1187 54 0 52 chr6 113658602 113658757 -35858280 + B1_Mus1 SINE Alu 2 148 0 5 1452 710 202 0 8 chr6 113658924 113659049 -35857988 + B1_Mur2 SINE Alu 25 148 -1 5 1452 432 234 10 21 chr6 113660467 113660563 -35856474 + RSINE1 SINE B4 4 98 -67 5 1452 1182 188 213 62 chr6 113662246 113662505 -35854532 - MTD LTR MaLR -14 405 90 5 1452 1158 56 28 0 chr6 113662505 113662648 -35854389 - B1_Mus2 SINE Alu 0 147 1 5 1452 1182 188 213 62 chr6 113662648 113662740 -35854297 - MTD LTR MaLR -330 89 1 5 1452 1074 96 0 20 chr6 113663092 113663241 -35853796 - B1_Mus2 SINE Alu 0 147 2 5 1452 1290 40 0 0 chr6 113663356 113663504 -35853533 + B1_Mus1 SINE Alu 1 148 0 5 1452 279 0 0 0 chr6 113663504 113663535 -35853502 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1452 243 253 62 103 chr6 113663569 113663666 -35853371 + PB1D10 SINE Alu 3 95 -22 5 1452 263 206 27 68 chr6 113663938 113664011 -35853026 + ID4_ SINE ID 9 78 -5 5 1452 1866 198 84 10 chr6 113664744 113665127 -35851910 - MTD LTR MaLR -8 411 1 5 1452 347 275 12 0 chr6 113666600 113666680 -35850357 + ID4_ SINE ID 3 83 0 5 1452 186 244 74 37 chr6 113667329 113667410 -35849627 - MIRc SINE MIR -147 121 38 5 1452 780 11 0 0 chr6 113667984 113668073 -35848964 + (TG)n Simple_repeat Simple_repeat 1 89 0 5 1452 249 180 0 0 chr6 113669792 113669842 -35847195 + (CATA)n Simple_repeat Simple_repeat 1 50 0 5 1452 248 155 68 40 chr6 113670711 113670785 -35846252 + B1_Mur4 SINE Alu 74 149 -1 5 1452 1579 180 50 52 chr6 113671603 113672048 -35844989 - MT2A LTR ERVL 0 601 10 5 1452 21 0 0 0 chr6 113672707 113672728 -35844309 + AT_rich Low_complexity Low_complexity 1 21 0 5 1452 297 311 151 13 chr6 113673054 113673207 -35843830 - L1MC5 LINE L1 -872 6913 6719 5 1452 497 311 75 21 chr6 113673207 113673394 -35843643 - B4A SINE B4 -1 291 95 5 1452 1160 54 0 0 chr6 113673505 113673653 -35843384 - B1_Mus1 SINE Alu 0 148 1 5 1452 395 246 112 40 chr6 113673722 113673874 -35843163 - RSINE1 SINE B4 0 165 3 5 1452 597 256 15 0 chr6 113673908 113674045 -35842992 + B3A SINE B2 3 141 -57 5 1452 372 298 144 14 chr6 113674316 113674524 -35842513 - L1M4 LINE L1 -3682 2464 2230 5 1452 237 259 17 0 chr6 113674617 113674675 -35842362 + CT-rich Low_complexity Low_complexity 2 60 0 5 1452 303 261 41 83 chr6 113674682 113674803 -35842234 - PB1 SINE Alu -11 116 1 5 1452 797 182 64 6 chr6 113674935 113675106 -35841931 - B3A SINE B2 -16 182 2 5 1452 335 271 135 0 chr6 113675106 113675202 -35841835 - B4A SINE B4 -62 230 122 5 1452 374 255 165 34 chr6 113675212 113675345 -35841692 - ID_B1 SINE B4 -55 237 86 5 1452 185 0 40 0 chr6 113675408 113675433 -35841604 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 1452 824 131 201 5 chr6 113676414 113676598 -35840439 + URR1A DNA MER1_type 7 226 0 5 1452 568 207 72 29 chr6 113676693 113676832 -35840205 + B1_Mur2 SINE Alu 5 149 0 5 1452 653 218 8 8 chr6 113676859 113676993 -35840044 - B1F2 SINE Alu -10 139 6 5 1452 274 210 16 0 chr6 113676940 113677002 -35840035 - B4A SINE B4 -148 144 82 5 1452 249 163 41 0 chr6 113679133 113679182 -35837855 + L1M3 LINE L1 5861 5911 -272 5 1452 480 274 61 72 chr6 113681032 113681213 -35835824 + B4A SINE B4 111 289 -3 5 1452 1096 68 0 7 chr6 113681589 113681737 -35835300 + B1_Mus1 SINE Alu 2 148 0 5 1452 712 133 102 0 chr6 113681827 113681955 -35835082 + B1_Mus2 SINE Alu 1 141 -6 5 1452 577 291 65 27 chr6 113681962 113682146 -35834891 + B4A SINE B4 82 272 -20 5 1452 309 282 53 26 chr6 113682354 113682467 -35834570 + L1MA4A LINE L1 2734 2849 -3294 5 1452 729 226 98 28 chr6 113682478 113682784 -35834253 + MTEa LTR MaLR 4 372 -7 5 1452 740 224 0 13 chr6 113682863 113683012 -35834025 - B1_Mus1 SINE Alu -1 147 1 5 1452 372 316 105 45 chr6 113683421 113683822 -35833215 + L1MA4A LINE L1 5598 6022 -278 5 1452 334 286 80 48 chr6 113683917 113684042 -35832995 + L1M4 LINE L1 5592 5720 -458 5 1452 293 184 0 0 chr6 113684042 113684091 -35832946 - B1_Mus2 SINE Alu -94 53 5 5 1452 226 286 0 100 chr6 113684091 113684112 -35832925 - B4 SINE B4 -154 138 76 5 1452 279 152 33 17 chr6 113685291 113685351 -35831686 - PB1D10 SINE Alu -1 116 56 5 1452 645 258 161 0 chr6 113685433 113685681 -35831356 - Charlie4a DNA MER1_type -175 333 46 5 1452 378 194 122 37 chr6 113685905 113686012 -35831025 + RSINE1 SINE B4 2 117 -48 5 1452 1309 75 15 46 chr6 113686751 113686948 -35830089 + B2_Mm2 SINE B2 2 192 -3 5 1452 413 274 0 8 chr6 113688126 113688244 -35828793 - PB1D10 SINE Alu 0 117 1 5 1452 501 179 47 31 chr6 113688882 113689009 -35828028 + MurSatRep1 Unknown Unknown 156 284 -1853 5 1452 1282 103 24 0 chr6 113691065 113691278 -35825759 - L1_Mur2 LINE L1 -1852 4025 3808 5 1452 1124 115 16 0 chr6 113691277 113691459 -35825578 + L1_Mur2 LINE L1 4018 4202 -1675 5 1452 1121 75 0 0 chr6 113691702 113691848 -35825189 + B1_Mus1 SINE Alu 2 147 -1 5 1452 222 173 40 0 chr6 113692662 113692737 -35824300 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 1452 1608 212 72 24 chr6 113693085 113693462 -35823575 + MTD LTR MaLR 10 404 -15 5 1452 312 91 0 0 chr6 113696184 113696228 -35820809 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 1452 264 100 0 0 chr6 113697798 113697838 -35819199 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1452 24 53 0 0 chr6 113698244 113698282 -35818755 + AT_rich Low_complexity Low_complexity 1 38 0 5 1452 249 273 97 39 chr6 113699937 113700040 -35816997 + MIRc SINE MIR 11 119 -149 5 1452 270 294 311 14 chr6 113700809 113700957 -35816080 - ID_B1 SINE B4 -4 220 29 5 1452 190 200 39 39 chr6 113700965 113701017 -35816020 + MIRc SINE MIR 123 174 -94 5 1452 243 173 0 0 chr6 113701304 113701356 -35815681 + A-rich Low_complexity Low_complexity 1 52 0 5 1452 236 30 30 0 chr6 113701919 113701952 -35815085 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1452 284 149 0 21 chr6 113704337 113704385 -35812652 + BC1_Mm scRNA scRNA 5 51 -101 5 1452 192 77 0 0 chr6 113706088 113706114 -35810923 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1452 414 0 0 0 chr6 113706587 113706633 -35810404 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1452 489 283 0 0 chr6 113707800 113707906 -35809131 - PB1D7 SINE Alu -10 110 5 5 1452 271 339 32 16 chr6 113707906 113707918 -35809119 - B4A SINE B4 -88 199 80 5 1452 493 254 0 26 chr6 113707945 113708058 -35808979 - PB1D10 SINE Alu -6 111 2 5 1452 267 247 0 0 chr6 113708255 113708328 -35808709 + (TG)n Simple_repeat Simple_repeat 1 73 0 5 1452 250 310 142 16 chr6 113708576 113708766 -35808271 + MER113 DNA MER1_type 302 515 -6 5 1452 253 209 60 0 chr6 113709436 113709503 -35807534 + URR1B DNA MER1_type 155 225 0 5 1452 656 216 134 29 chr6 113709723 113709895 -35807142 - ID_B1 SINE B4 -12 212 23 5 1452 200 232 0 51 chr6 113713081 113713124 -35803913 + (CATA)n Simple_repeat Simple_repeat 1 43 0 5 1452 672 36 0 0 chr6 113713124 113713207 -35803830 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 5 1452 200 232 0 51 chr6 113713207 113713222 -35803815 + (CATA)n Simple_repeat Simple_repeat 4 16 0 5 1452 245 248 72 0 chr6 113714999 113715085 -35801952 - MIR SINE MIR -122 146 50 5 1452 372 314 42 28 chr6 113716301 113716445 -35800592 - MER117 DNA MER1_type -40 157 12 5 1452 419 154 11 66 chr6 113717243 113717424 -35799613 + (TATATG)n Simple_repeat Simple_repeat 4 174 0 5 1452 234 0 0 0 chr6 113717427 113717453 -35799584 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1452 308 368 20 14 chr6 113717471 113717617 -35799420 - L3 LINE CR1 -11 4478 4332 5 1452 215 168 0 0 chr6 113718018 113718060 -35798977 - PB1D10 SINE Alu -46 103 60 5 1452 295 293 121 76 chr6 113718243 113718557 -35798480 + ORR1E LTR MaLR 24 351 -8 5 1452 226 345 23 0 chr6 113719449 113719620 -35797417 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 5 1452 243 125 0 0 chr6 113719959 113719999 -35797038 + (CACCC)n Simple_repeat Simple_repeat 4 43 0 5 1452 186 276 17 33 chr6 113720019 113720079 -35796958 - MIR3 SINE MIR -42 166 108 5 1452 1067 245 125 21 chr6 113720105 113720434 -35796603 + MTEa LTR MaLR 17 379 0 5 1452 180 97 0 0 chr6 113720504 113720535 -35796502 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1452 455 268 29 73 chr6 113720542 113720679 -35796358 - RSINE1 SINE B4 -20 145 15 5 1452 186 285 42 5 chr6 113721141 113721229 -35795808 + MIR SINE MIR 65 153 -115 5 1452 327 164 0 0 chr6 113721714 113721775 -35795262 + GA-rich Low_complexity Low_complexity 1 61 0 5 1452 279 258 137 53 chr6 113722022 113722153 -35794884 - MIRb SINE MIR -99 169 28 5 1452 365 86 17 0 chr6 113722352 113722410 -35794627 + (CAGGG)n Simple_repeat Simple_repeat 1 59 0 5 1452 528 179 66 0 chr6 113723881 113723987 -35793050 - PB1D7 SINE Alu -5 115 3 5 1452 181 178 152 22 chr6 113724054 113724084 -35792953 - MIRc SINE MIR -121 147 118 5 1452 216 0 0 0 chr6 113724084 113724108 -35792929 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 5 1452 181 178 152 22 chr6 113724108 113724123 -35792914 - MIRc SINE MIR -151 117 96 5 1452 2226 186 26 26 chr6 113724660 113725079 -35791958 - MTD LTR MaLR 0 419 1 5 1452 388 299 43 36 chr6 113725154 113725293 -35791744 - B1F2 SINE Alu -8 141 2 5 1452 508 283 0 34 chr6 113725170 113725302 -35791735 - ID_B1 SINE B4 -20 204 82 5 1452 361 278 104 19 chr6 113725427 113725581 -35791456 - L1MD2 LINE L1 -17 6342 6176 5 1452 340 272 11 0 chr6 113725844 113725936 -35791101 - L1MD2 LINE L1 -416 5943 5851 5 1452 1003 203 65 0 chr6 113726035 113726250 -35790787 + B4A SINE B4 1 229 -63 6 1452 603 229 0 0 chr6 113726250 113726368 -35790669 + PB1D9 SINE Alu 1 118 -2 6 1452 451 300 144 0 chr6 113726368 113726409 -35790628 + B4A SINE B4 86 267 -25 6 1452 218 105 0 26 chr6 113726420 113726459 -35790578 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1452 236 261 15 0 chr6 113726853 113726918 -35790119 + MIRm SINE MIR 203 268 -8 6 1452 412 301 172 6 chr6 113727353 113727510 -35789527 + B3A SINE B2 1 183 -15 6 1452 227 195 0 0 chr6 113727784 113727825 -35789212 + MIR3 SINE MIR 122 162 -46 6 1452 694 188 19 49 chr6 113728869 113729035 -35788002 + RSINE1 SINE B4 2 165 0 6 1452 276 269 98 66 chr6 113728880 113729063 -35787974 + B3A SINE B2 10 198 0 6 1452 973 311 88 29 chr6 113729063 113729758 -35787279 + L1MB2 LINE L1 5425 6171 0 6 1452 210 246 14 14 chr6 113731152 113731226 -35785811 + (TTGTG)n Simple_repeat Simple_repeat 2 75 0 6 1452 293 259 35 12 chr6 113731390 113731562 -35785475 + (GTGTG)n Simple_repeat Simple_repeat 2 177 0 6 1452 224 217 72 6 chr6 113731541 113731708 -35785329 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 1452 397 285 35 42 chr6 113733253 113733396 -35783641 - ID_B1 SINE B4 -51 173 32 6 1452 916 231 41 46 chr6 113733397 113733742 -35783295 + RLTR15 LTR ERVK 1 343 -16 6 1452 424 272 34 34 chr6 113734078 113734257 -35782780 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 6 1452 712 186 27 30 chr6 113734293 113734599 -35782438 + (TCCA)n Simple_repeat Simple_repeat 1 304 0 6 1452 222 204 0 22 chr6 113734621 113734666 -35782371 + CT-rich Low_complexity Low_complexity 1 44 0 6 1452 816 204 0 0 chr6 113735056 113735203 -35781834 - B1_Mus2 SINE Alu 0 147 1 6 1452 1654 192 74 24 chr6 113735203 113735549 -35781488 + MTD LTR MaLR 46 407 -12 6 1452 218 211 283 22 chr6 113735968 113736060 -35780977 - MIR SINE MIR -135 127 12 6 1452 1034 188 66 0 chr6 113736274 113736471 -35780566 - URR1A DNA MER1_type -16 210 1 6 1452 186 243 38 63 chr6 113737270 113737349 -35779688 + L4 LINE RTE 1005 1081 -948 6 1452 340 333 133 6 chr6 113738014 113738195 -35778842 + MLT1H LTR MaLR 178 381 -168 6 1452 477 0 0 0 chr6 113738734 113738787 -35778250 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1452 823 277 89 11 chr6 113738809 113738997 -35778040 - B4 SINE B4 0 292 86 6 1452 478 299 21 7 chr6 113738997 113739142 -35777895 - RSINE1 SINE B4 -16 149 3 6 1452 823 277 89 11 chr6 113739142 113739223 -35777814 - B4 SINE B4 -207 85 3 6 1452 580 187 56 0 chr6 113739360 113739467 -35777570 + PB1D9 SINE Alu 2 114 -6 6 1452 21 0 0 0 chr6 113739476 113739497 -35777540 + AT_rich Low_complexity Low_complexity 1 21 0 6 1452 198 0 0 0 chr6 113739497 113739519 -35777518 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1452 315 0 0 0 chr6 113739574 113739609 -35777428 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 1452 740 241 6 7 chr6 113740181 113740349 -35776688 - ID_B1 SINE B4 -47 245 75 6 1452 934 198 125 0 chr6 113740380 113740572 -35776465 - B3 SINE B2 0 216 1 6 1452 360 111 0 0 chr6 113740912 113740975 -35776062 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1452 799 277 12 62 chr6 113741023 113741281 -35775756 - B4A SINE B4 -47 245 1 6 1452 429 243 80 18 chr6 113741425 113741538 -35775499 + PB1D7 SINE Alu 1 120 0 6 1452 859 224 48 24 chr6 113741767 113741977 -35775060 - ID_B1 SINE B4 -7 217 3 6 1452 909 271 63 52 chr6 113742029 113742298 -35774739 - B4A SINE B4 -19 273 2 6 1452 271 333 47 42 chr6 113743953 113744144 -35772893 + MIRb SINE MIR 45 236 -32 6 1452 1332 83 72 0 chr6 113744207 113744368 -35772669 + B2_Mm2 SINE B2 2 175 -20 6 1452 279 0 0 0 chr6 113744368 113744399 -35772638 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1452 1332 83 72 0 chr6 113744399 113744417 -35772620 + B2_Mm2 SINE B2 176 193 -2 6 1452 241 240 23 36 chr6 113744467 113744558 -35772479 - L2c LINE L2 0 3426 3331 6 1452 218 240 61 85 chr6 113745984 113746066 -35770971 - MIRb SINE MIR -71 197 118 6 1452 376 260 0 13 chr6 113747560 113747638 -35769399 - ID4_ SINE ID -5 78 2 6 1452 291 225 0 40 chr6 113747640 113747714 -35769323 - PB1D10 SINE Alu 0 117 47 6 1452 414 0 0 0 chr6 113747739 113747785 -35769252 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1452 343 233 0 118 chr6 113748412 113748514 -35768523 - URR1A DNA MER1_type -57 169 80 6 1452 186 298 40 40 chr6 113748924 113749024 -35768013 - MIRm SINE MIR -87 181 86 6 1452 630 126 0 0 chr6 113750226 113750329 -35766708 + (TCCC)n Simple_repeat Simple_repeat 4 106 0 6 1452 225 94 0 0 chr6 113750337 113750369 -35766668 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 6 1452 223 308 0 0 chr6 113750407 113750459 -35766578 - ID4 SINE ID -29 54 3 6 1452 348 297 8 75 chr6 113750466 113750586 -35766451 - PB1D7 SINE Alu -7 113 2 6 1452 632 200 14 54 chr6 113750765 113750913 -35766124 - B3 SINE B2 0 216 75 6 1452 752 170 28 21 chr6 113750937 113751081 -35765956 - B1_Mur2 SINE Alu -2 147 3 6 1452 352 282 23 98 chr6 113751081 113751151 -35765886 - MT2B LTR ERVL -446 155 99 6 1452 859 139 21 7 chr6 113752799 113752944 -35764093 - B1_Mur3 SINE Alu -2 147 1 6 1452 582 208 12 6 chr6 113753848 113754008 -35763029 + (CA)n Simple_repeat Simple_repeat 1 161 0 6 1452 522 306 110 46 chr6 113755988 113756361 -35760676 + Charlie4a DNA MER1_type 24 420 -88 6 1452 274 307 13 0 chr6 113756480 113756555 -35760482 - ID4 SINE ID -5 78 3 6 1452 805 239 55 20 chr6 113756557 113756758 -35760279 - ID_B1 SINE B4 -8 216 9 6 1452 364 313 37 15 chr6 113756783 113756919 -35760118 - B1F SINE Alu -8 141 3 6 1452 950 221 38 14 chr6 113757049 113757260 -35759777 - B3 SINE B2 0 216 1 6 1452 415 252 0 144 chr6 113757379 113757518 -35759519 + ID_B1 SINE B4 100 218 -6 6 1452 192 374 84 0 chr6 113758238 113758345 -35758692 - MIR SINE MIR -132 130 15 6 1452 929 175 80 25 chr6 113758751 113758950 -35758087 - URR1A DNA MER1_type -16 210 1 6 1452 272 185 196 52 chr6 113759913 113760010 -35757027 - MIRm SINE MIR -55 153 43 6 1452 236 276 138 57 chr6 113760110 113760233 -35756804 - MIR3 SINE MIR -69 139 7 6 1452 284 213 16 0 chr6 113761019 113761080 -35755957 + L2b LINE L2 3019 3080 -295 6 1452 915 146 173 0 chr6 113761101 113761286 -35755751 + URR1B DNA MER1_type 1 217 -8 6 1452 194 266 0 99 chr6 113761471 113761527 -35755510 + L2b LINE L2 3324 3375 -12 6 1452 1967 158 142 13 chr6 113761527 113761900 -35755137 + MTC LTR MaLR 1 421 0 6 1452 194 266 0 99 chr6 113761900 113761914 -35755123 + L2b LINE L2 3376 3387 0 6 1452 193 308 108 0 chr6 113762450 113762515 -35754522 + L2b LINE L2 3283 3354 -21 6 1452 387 269 175 23 chr6 113763427 113763598 -35753439 + MER117 DNA MER1_type 1 197 0 6 1452 327 325 78 24 chr6 113764150 113764355 -35752682 - MIRb SINE MIR -16 252 37 6 1452 323 109 0 0 chr6 113764411 113764457 -35752580 - ID_B1 SINE B4 -3 221 176 6 1452 257 200 71 48 chr6 113764457 113764494 -35752543 - PB1 SINE Alu -1 125 41 6 1452 2631 223 44 31 chr6 113765563 113766240 -35750797 + Lx9 LINE L1 6959 7644 0 6 1452 189 200 25 0 chr6 113766250 113766290 -35750747 + MIRb SINE MIR 156 196 -72 6 1452 287 325 16 41 chr6 113766483 113766605 -35750432 + L4 LINE RTE 1744 1862 -167 6 1452 224 286 35 18 chr6 113766838 113766925 -35750112 + MIR SINE MIR 72 168 -108 6 1452 380 276 234 0 chr6 113767572 113767717 -35749320 - Tigger5 DNA MER2_type -85 2321 2143 6 1452 333 109 0 0 chr6 113768276 113768331 -35748706 + (ATGGTG)n Simple_repeat Simple_repeat 3 57 0 6 1452 399 290 49 42 chr6 113769054 113769198 -35747839 - RSINE1 SINE B4 -13 152 8 6 1452 344 206 0 27 chr6 113769619 113769694 -35747343 - RSINE1 SINE B4 -91 74 2 6 1452 196 329 13 0 chr6 113770015 113770091 -35746946 + MIR SINE MIR 80 156 -106 6 1452 291 285 121 8 chr6 113770327 113770451 -35746586 + MER5A DNA MER1_type 17 154 -35 6 1453 364 289 0 24 chr6 113772044 113772168 -35744869 - MER53 DNA hAT -37 156 36 6 1453 243 0 0 0 chr6 113773866 113773893 -35743144 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1453 588 162 0 75 chr6 113773893 113774013 -35743024 - PB1D9 SINE Alu 0 120 10 6 1453 202 315 195 23 chr6 113774114 113774458 -35742579 + L2a LINE L2 2674 3076 -343 6 1453 201 182 0 0 chr6 113774459 113774492 -35742545 + T-rich Low_complexity Low_complexity 1 33 0 6 1453 1262 40 0 0 chr6 113774492 113774640 -35742397 - B1_Mus1 SINE Alu 0 148 1 6 1453 550 210 0 25 chr6 113775732 113775854 -35741183 + B1F1 SINE Alu 5 123 -26 6 1453 294 312 25 55 chr6 113775733 113775896 -35741141 + B4A SINE B4 91 248 -44 6 1453 1058 234 23 0 chr6 113775967 113776181 -35740856 - ID_B1 SINE B4 -1 223 5 6 1453 252 359 31 4 chr6 113776257 113776368 -35740669 + MIR SINE MIR 30 140 -68 6 1453 293 351 0 37 chr6 113777102 113777238 -35739799 + MIR SINE MIR 104 234 -28 6 1453 240 325 81 49 chr6 113778153 113778276 -35738761 + L2a LINE L2 3281 3407 -19 6 1453 207 315 144 0 chr6 113778684 113778795 -35738242 + MIR SINE MIR 16 142 -120 6 1453 364 260 15 8 chr6 113779626 113779759 -35737278 + MIR SINE MIR 45 168 -94 6 1453 383 284 14 47 chr6 113780322 113780470 -35736567 + GA-rich Low_complexity Low_complexity 3 145 0 6 1453 375 177 35 15 chr6 113780829 113780916 -35736121 + B3 SINE B2 4 83 -112 6 1453 5288 196 57 25 chr6 113780922 113782030 -35735007 + Lx5 LINE L1 5908 7050 0 6 1453 492 106 0 0 chr6 113782624 113782709 -35734328 + (TC)n Simple_repeat Simple_repeat 1 85 0 7 1453 1039 227 128 12 chr6 113782709 113782967 -35734070 - B4A SINE B4 -4 288 1 7 1453 283 331 112 16 chr6 113783308 113783338 -35733699 - B3 SINE B2 -5 211 7 7 1453 880 191 6 0 chr6 113783338 113783495 -35733542 - RSINE1 SINE B4 0 165 8 7 1453 351 349 24 6 chr6 113783515 113783682 -35733355 + MIRb SINE MIR 30 199 -69 7 1453 190 229 21 0 chr6 113784367 113784415 -35732622 - MIRc SINE MIR -120 148 100 7 1453 1307 222 35 12 chr6 113785192 113785532 -35731505 - MTE2a LTR MaLR -2 377 2 7 1453 221 270 131 62 chr6 113785842 113785972 -35731065 + MIRb SINE MIR 118 256 -12 7 1453 264 122 0 0 chr6 113786472 113786513 -35730524 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1453 328 301 63 6 chr6 113787348 113787523 -35729514 - MIRb SINE MIR -70 198 8 7 1453 546 273 30 30 chr6 113789455 113789621 -35727416 - MIR SINE MIR -71 191 26 7 1453 369 0 0 0 chr6 113791352 113791393 -35725644 + (CAG)n Simple_repeat Simple_repeat 3 43 0 7 1453 414 0 0 0 chr6 113792730 113792776 -35724261 + (CTA)n Simple_repeat Simple_repeat 3 48 0 7 1453 225 0 0 0 chr6 113792776 113792801 -35724236 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1453 506 234 122 41 chr6 113794266 113794417 -35722620 - ID_B1 SINE B4 -49 243 80 7 1453 308 247 68 0 chr6 113794826 113794899 -35722138 - ID_B1 SINE B4 -66 158 81 7 1453 336 308 10 0 chr6 113794899 113795009 -35722028 - MIR SINE MIR -66 202 80 7 1453 231 164 0 0 chr6 113795588 113795649 -35721388 + GA-rich Low_complexity Low_complexity 120 180 0 7 1453 344 0 0 161 chr6 113795650 113795830 -35721207 + (CAGAG)n Simple_repeat Simple_repeat 5 155 0 7 1453 220 241 17 0 chr6 113796676 113796734 -35720303 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 7 1453 420 229 21 0 chr6 113796749 113796889 -35720148 + (TCTA)n Simple_repeat Simple_repeat 4 146 0 7 1453 689 181 11 11 chr6 113796904 113797083 -35719954 + CT-rich Low_complexity Low_complexity 2 180 0 7 1453 402 21 0 0 chr6 113797553 113797600 -35719437 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 7 1453 22 35 0 0 chr6 113797641 113797670 -35719367 + AT_rich Low_complexity Low_complexity 1 29 0 7 1453 181 250 23 0 chr6 113797998 113798042 -35718995 + L2c LINE L2 3342 3386 -1 7 1453 380 307 18 18 chr6 113798075 113798128 -35718909 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 7 1453 480 35 0 0 chr6 113798128 113798186 -35718851 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 7 1453 380 307 18 18 chr6 113798186 113798298 -35718739 + (TGGA)n Simple_repeat Simple_repeat 1 112 0 7 1453 368 254 49 17 chr6 113798369 113798488 -35718549 + MIR3 SINE MIR 77 194 -14 7 1453 27 49 0 0 chr6 113798673 113798714 -35718323 + AT_rich Low_complexity Low_complexity 1 41 0 7 1453 254 293 96 62 chr6 113799005 113799183 -35717854 + MIRb SINE MIR 60 243 -19 7 1453 629 93 9 0 chr6 113799777 113799884 -35717153 + (GA)n Simple_repeat Simple_repeat 2 109 0 7 1453 272 85 43 0 chr6 113800092 113800139 -35716898 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 7 1453 289 263 15 0 chr6 113800373 113800510 -35716527 + (CCCA)n Simple_repeat Simple_repeat 3 141 0 7 1453 257 264 0 9 chr6 113800587 113800698 -35716339 + (CCCA)n Simple_repeat Simple_repeat 4 113 0 7 1453 264 347 22 33 chr6 113800728 113800910 -35716127 + (CCCA)n Simple_repeat Simple_repeat 1 180 0 7 1453 410 274 22 54 chr6 113800857 113801042 -35715995 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 7 1453 204 268 67 67 chr6 113801492 113801596 -35715441 + MIR3 SINE MIR 90 193 -15 7 1453 324 320 55 38 chr6 113804441 113804641 -35712396 - MIR3 SINE MIR -57 205 3 7 1453 771 311 49 8 chr6 113804661 113804927 -35712110 + B4A SINE B4 3 279 -13 7 1453 250 199 57 20 chr6 113804977 113805229 -35711808 + (CA)n Simple_repeat Simple_repeat 1 261 0 7 1453 276 162 19 48 chr6 113805262 113805366 -35711671 + (CATA)n Simple_repeat Simple_repeat 4 104 0 7 1453 228 169 0 38 chr6 113805493 113805573 -35711464 + (CA)n Simple_repeat Simple_repeat 1 77 0 7 1453 321 374 0 0 chr6 113808846 113808961 -35708076 + (TG)n Simple_repeat Simple_repeat 2 116 0 7 1453 360 59 0 0 chr6 113808980 113809031 -35708006 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1453 254 330 57 28 chr6 113809374 113809480 -35707557 - MIRb SINE MIR -109 159 51 7 1453 336 226 34 9 chr6 113810351 113810460 -35706577 - MIRc SINE MIR -79 197 77 7 1453 486 0 0 0 chr6 113811404 113811458 -35705579 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1453 227 254 0 0 chr6 113811732 113811767 -35705270 + A-rich Low_complexity Low_complexity 1 35 0 7 1453 402 21 0 0 chr6 113811767 113811814 -35705223 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 7 1453 227 254 0 0 chr6 113811814 113811845 -35705192 + A-rich Low_complexity Low_complexity 36 66 0 7 1453 243 316 84 0 chr6 113812611 113812769 -35704268 - MIR SINE MIR -42 226 50 7 1453 221 130 43 0 chr6 113814004 113814050 -35702987 + C-rich Low_complexity Low_complexity 5 52 0 7 1453 22 0 0 0 chr6 113815108 113815130 -35701907 + GC_rich Low_complexity Low_complexity 1 22 0 7 1453 249 306 202 5 chr6 113815161 113815384 -35701653 - L2 LINE L2 -961 2458 2192 7 1453 346 353 98 44 chr6 113816397 113816714 -35700323 + ORR1E LTR MaLR 21 354 -5 7 1453 455 212 139 33 chr6 113817158 113817309 -35699728 - ID_B1 SINE B4 -1 223 57 7 1453 1175 292 154 11 chr6 113817413 113818060 -35698977 - L1MB2 LINE L1 -232 5939 5214 7 1453 226 266 52 31 chr6 113818060 113818157 -35698880 - RLTR25B LTR ERVK -488 540 442 7 1453 432 222 14 0 chr6 113818087 113818193 -35698844 - B1_Mus2 SINE Alu -7 113 5 7 1453 499 208 98 26 chr6 113818207 113818360 -35698677 - L1MB2 LINE L1 -966 5180 5017 7 1453 248 70 23 0 chr6 113818497 113818540 -35698497 + (TCTCTG)n Simple_repeat Simple_repeat 3 46 0 7 1453 186 321 185 48 chr6 113818842 113819091 -35697946 + L2b LINE L2 3049 3331 -44 7 1453 219 310 190 19 chr6 113819238 113819396 -35697641 + MIRc SINE MIR 38 222 -46 7 1453 339 272 12 0 chr6 113820362 113820443 -35696594 + ID4_ SINE ID 2 83 0 7 1453 303 274 189 0 chr6 113821885 113821991 -35695046 - MIRb SINE MIR -83 185 60 7 1453 877 205 49 0 chr6 113822151 113822336 -35694701 - ID_B1 SINE B4 -18 206 13 7 1453 277 323 80 10 chr6 113824197 113824297 -35692740 - PB1D10 SINE Alu -8 109 3 7 1453 1177 268 72 25 chr6 113824332 113824695 -35692342 - MTD LTR MaLR -39 380 1 7 1453 222 276 78 39 chr6 113825691 113825793 -35691244 + L2b LINE L2 2952 3057 -318 7 1453 198 288 63 36 chr6 113825777 113825878 -35691159 + L2b LINE L2 2984 3079 -308 7 1453 203 282 46 23 chr6 113826038 113826125 -35690912 + L2b LINE L2 3338 3426 0 7 1453 413 278 0 22 chr6 113826226 113826410 -35690627 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1453 595 215 12 0 chr6 113827025 113827197 -35689840 + (TCCA)n Simple_repeat Simple_repeat 1 174 0 7 1453 704 266 16 3 chr6 113827217 113827540 -35689497 + (TCCA)n Simple_repeat Simple_repeat 1 327 0 7 1453 347 357 45 63 chr6 113827779 113828000 -35689037 + L2c LINE L2 2815 3031 -388 7 1453 208 270 92 67 chr6 113828153 113828272 -35688765 + L2c LINE L2 3266 3387 0 7 1453 557 301 53 11 chr6 113829053 113829241 -35687796 + B4 SINE B4 1 196 -96 7 1453 297 0 0 0 chr6 113830304 113830337 -35686700 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 7 1453 417 273 53 53 chr6 113831281 113831451 -35685586 - MIR SINE MIR -91 171 2 7 1453 298 288 114 50 chr6 113832896 113833097 -35683940 + LTR16A1 LTR ERVL 168 381 -75 7 1453 261 281 248 0 chr6 113833879 113834032 -35683005 - MIR SINE MIR -49 213 23 7 1453 193 205 26 0 chr6 113834068 113834107 -35682930 - MIRb SINE MIR -7 261 222 7 1453 240 355 165 0 chr6 113834332 113834453 -35682584 - MIR SINE MIR -115 147 7 7 1453 367 291 27 0 chr6 113834960 113835070 -35681967 - MIRm SINE MIR -119 157 45 7 1453 593 192 111 37 chr6 113835269 113835404 -35681633 - ID_B1 SINE B4 0 224 80 7 1453 1039 300 29 7 chr6 113835594 113835873 -35681164 - B4A SINE B4 -6 286 2 7 1453 328 299 67 26 chr6 113836458 113836626 -35680411 + MIR SINE MIR 29 193 -69 7 1453 508 313 65 20 chr6 113836710 113836958 -35680079 + MLT1C LTR MaLR 192 450 -17 7 1453 225 257 40 26 chr6 113838611 113838687 -35678350 - MIR SINE MIR -71 137 61 7 1453 198 0 0 0 chr6 113841132 113841154 -35675883 + (CAAAT)n Simple_repeat Simple_repeat 3 24 0 7 1453 25 51 0 0 chr6 113841382 113841421 -35675616 + GC_rich Low_complexity Low_complexity 1 39 0 7 1453 536 0 16 0 chr6 113842662 113842726 -35674311 + (TC)n Simple_repeat Simple_repeat 2 66 0 7 1453 220 296 67 67 chr6 113844657 113844791 -35672246 - MIRm SINE MIR -125 151 18 7 1453 301 279 77 18 chr6 113844950 113845146 -35671891 + MIR SINE MIR 31 243 -25 7 1453 268 274 11 35 chr6 113845371 113845458 -35671579 - MIR SINE MIR -78 184 100 7 1453 190 307 9 47 chr6 113845926 113846032 -35671005 + L2c LINE L2 3054 3155 -220 7 1453 220 312 63 21 chr6 113846085 113846180 -35670857 + L2c LINE L2 3289 3387 0 7 1453 468 0 0 0 chr6 113846963 113847015 -35670022 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1453 189 74 0 0 chr6 113847076 113847103 -35669934 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 7 1453 241 232 167 10 chr6 113847325 113847421 -35669616 + MIRc SINE MIR 23 133 -135 7 1453 206 307 76 30 chr6 113847651 113847782 -35669255 - L2b LINE L2 -269 3106 2970 7 1453 469 313 48 12 chr6 113849353 113849518 -35667519 + MIRb SINE MIR 27 197 -71 7 1453 505 265 8 8 chr6 113850331 113850449 -35666588 + RSINE1 SINE B4 2 119 -46 7 1453 264 137 0 0 chr6 113850450 113850501 -35666536 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1453 317 77 39 0 chr6 113850501 113850553 -35666484 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 7 1453 861 38 0 0 chr6 113850744 113850849 -35666188 + (CCA)n Simple_repeat Simple_repeat 3 107 0 7 1453 402 253 62 38 chr6 113851778 113851797 -35665240 + CYRA11_Mm Unknown Y-chromosome 149 171 -446 7 1453 1027 144 23 0 chr6 113851797 113851970 -35665067 - URR1B DNA MER1_type 0 225 49 7 1453 560 220 30 0 chr6 113852828 113852928 -35664109 - PB1D10 SINE Alu -13 104 2 8 1453 891 186 63 41 chr6 113853744 113853974 -35663063 - B3 SINE B2 0 216 6 8 1453 235 320 4 8 chr6 113855933 113856035 -35661002 - MIR SINE MIR -146 122 18 8 1453 269 333 97 8 chr6 113856384 113856508 -35660529 + MIR SINE MIR 108 242 -20 8 1453 258 367 10 0 chr6 113857360 113857458 -35659579 + Charlie8 DNA MER1_type 41 139 -2289 8 1453 323 356 40 31 chr6 113857642 113857871 -35659166 - MIR SINE MIR -1 275 37 8 1453 226 307 41 25 chr6 113858030 113858138 -35658899 - MIRb SINE MIR -117 159 49 8 1453 208 343 14 0 chr6 113858543 113858613 -35658424 + MIR3 SINE MIR 88 158 -50 8 1453 279 0 0 0 chr6 113858702 113858733 -35658304 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1453 327 177 0 0 chr6 113861293 113861355 -35655682 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1453 244 295 99 99 chr6 113861400 113861427 -35655610 - B2_Mm2 SINE B2 -3 192 71 8 1453 764 214 30 36 chr6 113861427 113861521 -35655516 - RSINE1 SINE B4 0 165 72 8 1453 2190 172 60 5 chr6 113861521 113861918 -35655119 - MTD LTR MaLR 0 419 1 8 1453 244 295 99 99 chr6 113861918 113861988 -35655049 - B2_Mm2 SINE B2 -125 70 1 8 1453 226 361 0 0 chr6 113862027 113862099 -35654938 - L2c LINE L2 -27 3360 3289 8 1453 220 342 34 67 chr6 113862085 113862204 -35654833 - MIRb SINE MIR -143 125 11 8 1453 486 248 25 17 chr6 113862276 113862395 -35654642 + MTD LTR MaLR 1 120 -299 8 1453 683 56 0 0 chr6 113862603 113862693 -35654344 + B2_Mm2 SINE B2 1 90 -105 8 1453 1042 287 22 4 chr6 113863005 113863274 -35653763 + MTE2b LTR MaLR 68 341 -38 8 1453 886 325 80 21 chr6 113865121 113865557 -35651480 + MLT1C LTR MaLR 3 464 -3 8 1453 297 197 76 0 chr6 113866229 113866295 -35650742 + PB1D9 SINE Alu 44 114 -6 8 1453 511 231 113 26 chr6 113866341 113866492 -35650545 - RSINE1 SINE B4 0 165 2 8 1453 250 217 0 0 chr6 113866796 113866842 -35650195 - PB1D7 SINE Alu -74 46 1 8 1453 323 85 34 0 chr6 113867105 113867164 -35649873 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 8 1453 259 338 31 37 chr6 113867752 113867915 -35649122 + MIRc SINE MIR 35 196 -72 8 1453 1716 193 85 41 chr6 113867943 113868332 -35648705 - MTD LTR MaLR -10 409 4 8 1453 226 323 134 28 chr6 113869792 113870006 -35647031 - MIRm SINE MIR -1 275 21 8 1453 603 0 0 0 chr6 113870880 113870947 -35646090 + (GA)n Simple_repeat Simple_repeat 2 68 0 8 1453 309 68 0 0 chr6 113870994 113871038 -35645999 + (CCCA)n Simple_repeat Simple_repeat 2 45 0 8 1453 277 250 96 22 chr6 113871073 113871208 -35645829 - L1MC4a LINE L1 -9 7873 7729 8 1453 257 339 0 32 chr6 113871355 113871541 -35645496 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1453 279 242 15 0 chr6 113871568 113871634 -35645403 - L1MD2 LINE L1 -249 6501 6435 8 1453 423 0 0 0 chr6 113871788 113871835 -35645202 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1453 334 327 198 19 chr6 113871838 113872001 -35645036 - B4A SINE B4 -22 270 69 8 1453 333 0 0 0 chr6 113872001 113872038 -35644999 + (TA)n Simple_repeat Simple_repeat 1 37 0 8 1453 334 327 198 19 chr6 113872038 113872086 -35644951 - B4A SINE B4 -224 68 21 8 1453 616 313 110 41 chr6 113872146 113872609 -35644428 - L1MD2 LINE L1 -453 6180 5686 8 1453 333 192 257 9 chr6 113872639 113872744 -35644293 - RSINE1 SINE B4 -34 131 1 8 1453 1341 293 161 19 chr6 113872790 113872939 -35644098 - L1MD2 LINE L1 -4842 1791 1622 8 1453 351 65 0 0 chr6 113872939 113872985 -35644052 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1453 1341 293 161 19 chr6 113872985 113873245 -35643792 - L1MD2 LINE L1 -5012 1621 1354 8 1453 273 29 0 0 chr6 113873245 113873279 -35643758 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 8 1453 1341 293 161 19 chr6 113873279 113873692 -35643345 - L1MD2 LINE L1 -5280 1353 852 8 1453 1310 138 36 9 chr6 113873852 113874071 -35642966 - URR1B DNA MER1_type 0 225 1 8 1453 583 207 8 128 chr6 113874388 113874521 -35642516 - B1F SINE Alu -31 118 1 8 1453 277 319 97 51 chr6 113874521 113874609 -35642428 - MT2B LTR ERVL -448 153 57 8 1453 1272 236 112 9 chr6 113875400 113875738 -35641299 + MTEb LTR MaLR 1 373 -6 8 1453 839 279 94 15 chr6 113875907 113876274 -35640763 + Charlie1 DNA MER1_type 1595 2018 -763 8 1453 672 56 0 0 chr6 113876280 113876369 -35640668 + (GA)n Simple_repeat Simple_repeat 2 90 0 8 1453 372 317 123 46 chr6 113876764 113876959 -35640078 + Charlie1 DNA MER1_type 1990 2199 -582 8 1453 443 254 18 35 chr6 113876968 113877082 -35639955 + RSINE1 SINE B4 6 117 -48 8 1453 4661 21 0 0 chr6 113877082 113877640 -35639397 - L1Md_T LINE L1 -406 6176 5619 8 1453 3478 30 0 0 chr6 113877640 113878037 -35639000 + L1Md_T LINE L1 6186 6582 0 8 1453 1564 43 27 0 chr6 113878137 113878325 -35638712 + B2_Mm1a SINE B2 1 193 0 8 1453 523 261 52 7 chr6 113878362 113878497 -35638540 + B3 SINE B2 76 216 0 8 1453 356 287 81 0 chr6 113878626 113878713 -35638324 - PB1D10 SINE Alu -9 108 15 8 1453 327 132 66 0 chr6 113879813 113879904 -35637133 + GA-rich Low_complexity Low_complexity 1 97 0 8 1453 271 206 29 29 chr6 113880314 113880384 -35636653 - MIRc SINE MIR -119 149 80 8 1453 953 299 65 18 chr6 113881004 113881280 -35635757 + B4A SINE B4 4 292 0 8 1453 498 108 0 0 chr6 113881280 113881354 -35635683 + (CA)n Simple_repeat Simple_repeat 2 75 0 8 1453 330 327 71 47 chr6 113881456 113881668 -35635369 + LTR16C LTR ERVL 172 388 -101 8 1453 22 35 0 0 chr6 113881989 113882018 -35635019 + AT_rich Low_complexity Low_complexity 1 29 0 8 1453 494 200 124 0 chr6 113883972 113884077 -35632960 + RSINE1 SINE B4 4 121 -44 8 1453 342 0 0 0 chr6 113884119 113884157 -35632880 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1453 538 294 14 14 chr6 113884220 113884368 -35632669 - RSINE1 SINE B4 -14 151 4 8 1453 384 22 0 0 chr6 113885015 113885060 -35631977 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1453 458 202 11 0 chr6 113885065 113885159 -35631878 - MTD LTR MaLR -214 205 111 8 1453 677 183 311 0 chr6 113885161 113885325 -35631712 + B3 SINE B2 2 216 0 8 1453 464 252 0 9 chr6 113885355 113885463 -35631574 - MTD LTR MaLR -300 119 13 8 1453 635 311 24 33 chr6 113885628 113885841 -35631196 - ID_B1 SINE B4 -12 212 2 8 1453 268 206 308 53 chr6 113885881 113886014 -35631023 - MIRb SINE MIR -64 204 38 8 1453 273 306 109 22 chr6 113886250 113886387 -35630650 + MIRc SINE MIR 118 266 -2 8 1453 658 244 73 39 chr6 113888831 113889010 -35628027 + MTE2b LTR MaLR 195 379 0 8 1453 223 321 75 7 chr6 113889479 113889590 -35627447 - MIRb SINE MIR -155 121 7 8 1453 2931 143 78 2 chr6 113889762 113890246 -35626791 + RLTR28 LTR ERVL 4 524 0 8 1453 434 267 61 0 chr6 113891167 113891298 -35625739 + MLT1K LTR MaLR 415 553 -42 8 1453 205 204 18 36 chr6 113891397 113891453 -35625584 + GA-rich Low_complexity Low_complexity 4 58 0 8 1453 374 0 0 21 chr6 113891713 113891760 -35625277 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1453 790 229 93 10 chr6 113892025 113892219 -35624818 + ID_B1 SINE B4 2 211 -13 8 1453 278 248 91 60 chr6 113893180 113893352 -35623685 + L2c LINE L2 3016 3196 -191 8 1453 337 281 34 0 chr6 113893665 113893754 -35623283 - MIRb SINE MIR -122 146 55 8 1453 387 294 61 31 chr6 113894274 113894471 -35622566 - MIRb SINE MIR -33 235 31 8 1453 789 110 0 0 chr6 113894677 113894795 -35622242 + (CA)n Simple_repeat Simple_repeat 2 119 0 8 1453 244 274 96 0 chr6 113895346 113895419 -35621618 + MIRc SINE MIR 67 146 -122 8 1453 249 33 0 0 chr6 113896149 113896179 -35620858 + (CCCTAA)n Simple_repeat Simple_repeat 5 34 0 8 1453 672 77 0 0 chr6 113896831 113896922 -35620115 + (CA)n Simple_repeat Simple_repeat 2 92 0 8 1453 1225 225 134 30 chr6 113898250 113898585 -35618452 - ORR1D2 LTR MaLR 0 370 1 8 1453 657 69 0 0 chr6 113899056 113899143 -35617894 + (GA)n Simple_repeat Simple_repeat 1 87 0 8 1453 2457 86 3 60 chr6 113899696 113900043 -35616994 + ORR1A2 LTR MaLR 1 327 0 8 1453 357 23 0 0 chr6 113901018 113901051 -35615986 + (TA)n Simple_repeat Simple_repeat 1 33 0 8 1453 480 77 0 0 chr6 113901051 113901116 -35615921 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1453 357 23 0 0 chr6 113901116 113901126 -35615911 + (TA)n Simple_repeat Simple_repeat 1 10 0 8 1453 300 313 141 7 chr6 113901328 113901463 -35615574 - MIR3 SINE MIR -18 190 38 8 1454 450 0 0 0 chr6 113901619 113901669 -35615368 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1454 253 260 134 45 chr6 113904298 113904455 -35612582 + ORR1E LTR MaLR 65 235 -124 8 1454 572 296 38 28 chr6 113904544 113904754 -35612283 - ID_B1 SINE B4 0 292 87 8 1454 183 310 47 12 chr6 113905610 113905695 -35611342 + MIRc SINE MIR 46 133 -135 8 1454 189 0 0 0 chr6 113905701 113905722 -35611315 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 8 1454 282 303 6 44 chr6 113906151 113906310 -35610727 + CT-rich Low_complexity Low_complexity 5 157 0 8 1454 183 292 87 33 chr6 113906717 113906809 -35610228 - MIRc SINE MIR -120 148 52 8 1454 205 222 37 0 chr6 113907314 113907368 -35609669 + MIRc SINE MIR 95 150 -118 8 1454 252 261 14 0 chr6 113909431 113909500 -35607537 - L2b LINE L2 -35 3340 3271 8 1454 411 222 65 29 chr6 113910957 113911096 -35605941 + L1ME1 LINE L1 5995 6138 -41 8 1454 659 218 169 0 chr6 113911122 113911264 -35605773 + B3 SINE B2 3 168 -48 8 1454 1180 294 3 10 chr6 113911957 113912249 -35604788 + B4 SINE B4 1 290 -2 8 1454 435 68 0 0 chr6 113912273 113912332 -35604705 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1454 874 234 52 16 chr6 113913228 113913419 -35603618 + B3 SINE B2 1 198 -18 8 1454 438 20 0 0 chr6 113913420 113913471 -35603566 + (TAA)n Simple_repeat Simple_repeat 2 52 0 8 1454 514 131 41 14 chr6 113913543 113913690 -35603347 + (TG)n Simple_repeat Simple_repeat 1 151 0 8 1454 1062 246 35 21 chr6 113913690 113913973 -35603064 - B4 SINE B4 0 292 6 9 1454 263 228 18 0 chr6 113913982 113914039 -35602998 + CT-rich Low_complexity Low_complexity 1 58 0 9 1454 254 302 46 11 chr6 113914224 113914311 -35602726 - MIRc SINE MIR -127 141 52 9 1454 555 16 0 0 chr6 113914739 113914803 -35602234 + (TC)n Simple_repeat Simple_repeat 2 65 0 9 1454 210 343 14 41 chr6 113915111 113915184 -35601853 - ID2 SINE ID -10 73 3 9 1454 228 270 93 13 chr6 113915146 113915221 -35601816 - ZP3AR Satellite Satellite -130 82 2 9 1454 382 135 214 68 chr6 113917608 113917711 -35599326 + PB1D7 SINE Alu 2 119 -1 9 1454 255 338 13 0 chr6 113917785 113917862 -35599175 + ID4_ SINE ID 2 79 -4 9 1454 376 300 10 0 chr6 113918278 113918378 -35598659 + ID_B1 SINE B4 1 101 -123 9 1454 189 0 0 0 chr6 113918614 113918635 -35598402 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 1454 187 290 100 27 chr6 113918716 113918826 -35598211 + MIR3 SINE MIR 4 121 -87 9 1454 209 302 131 9 chr6 113919931 113920038 -35596999 + L2c LINE L2 3074 3193 -194 9 1454 768 93 34 17 chr6 113921212 113921387 -35595650 + (TG)n Simple_repeat Simple_repeat 2 179 0 9 1454 537 110 0 0 chr6 113921664 113921746 -35595291 + (CGTG)n Simple_repeat Simple_repeat 2 83 0 9 1454 1255 220 125 16 chr6 113922160 113922532 -35594505 + MTD LTR MaLR 5 405 -14 9 1454 1138 69 14 0 chr6 113923378 113923522 -35593515 + B1_Mm SINE Alu 2 147 0 9 1454 264 314 168 34 chr6 113923911 113924119 -35592918 + MER21B LTR ERV1 504 739 -124 9 1454 195 324 97 42 chr6 113924130 113924346 -35592691 + L2 LINE L2 2561 2788 -631 9 1454 3771 198 6 16 chr6 113924756 113925434 -35591603 + Lx5 LINE L1 6380 7050 0 9 1454 722 239 93 37 chr6 113925434 113925734 -35591303 + RMER5 LTR ERV1 81 397 -137 9 1454 808 82 0 16 chr6 113925753 113925877 -35591160 + (GGAA)n Simple_repeat Simple_repeat 4 125 0 9 1454 236 305 62 21 chr6 113926939 113927036 -35590001 + Tigger5 DNA MER2_type 83 183 -2223 9 1454 271 270 224 0 chr6 113927214 113927398 -35589639 + MLT1B LTR MaLR 107 331 -59 9 1454 1027 214 18 41 chr6 113927514 113927733 -35589304 + B3 SINE B2 3 216 0 9 1454 305 82 0 20 chr6 113928002 113928052 -35588985 + (TCCCC)n Simple_repeat Simple_repeat 2 50 0 9 1454 455 332 72 24 chr6 113928109 113928399 -35588638 - L1ME4a LINE L1 -221 5903 5600 9 1454 360 0 0 0 chr6 113930001 113930041 -35586996 + (A)n Simple_repeat Simple_repeat 1 40 0 9 1454 378 0 0 0 chr6 113930426 113930468 -35586569 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1454 1998 192 71 8 chr6 113930682 113931076 -35585961 - MTD LTR MaLR 0 419 1 9 1454 276 340 57 0 chr6 113931095 113931201 -35585836 - RSINE1 SINE B4 -16 149 38 9 1454 242 356 42 98 chr6 113931517 113931710 -35585327 - LTR33A LTR ERVL -321 199 18 9 1454 681 318 76 63 chr6 113932701 113933017 -35584020 - L1MA4 LINE L1 -38 6262 5932 9 1454 1517 58 11 0 chr6 113933017 113933206 -35583831 - B2_Mm1t SINE B2 -1 192 2 9 1454 681 318 76 63 chr6 113933206 113933352 -35583685 - L1MA4 LINE L1 -369 5931 5794 9 1454 273 216 84 74 chr6 113936418 113936434 -35580603 - PB1D10 SINE Alu -1 116 21 9 1454 347 202 63 0 chr6 113936434 113936513 -35580524 - ID_B1 SINE B4 -39 185 102 9 1454 210 143 0 0 chr6 113937069 113937104 -35579933 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 9 1454 687 204 20 8 chr6 113937162 113937415 -35579622 + (TGGA)n Simple_repeat Simple_repeat 1 256 0 9 1454 197 65 32 0 chr6 113937434 113937465 -35579572 + (TGGA)n Simple_repeat Simple_repeat 2 33 0 9 1454 220 358 32 0 chr6 113938341 113938436 -35578601 - L2b LINE L2 -15 3360 3263 9 1454 245 344 76 25 chr6 113938666 113938863 -35578174 - L2b LINE L2 -368 3051 2845 9 1454 573 272 0 0 chr6 113939238 113939363 -35577674 - ID_B1 SINE B4 -16 208 84 9 1454 713 207 50 0 chr6 113939991 113940131 -35576906 - B1_Mur1 SINE Alu -1 148 2 9 1454 903 234 5 31 chr6 113940173 113940367 -35576670 - B3A SINE B2 -4 194 6 9 1454 1181 233 74 21 chr6 113940389 113940726 -35576311 - ORR1E LTR MaLR -4 355 1 9 1454 501 361 60 4 chr6 113940889 113941139 -35575898 + MER82 DNA MER2_type 374 637 -16 9 1454 429 276 1 63 chr6 113942475 113942629 -35574408 - MIRc SINE MIR -105 163 14 9 1454 1095 230 10 0 chr6 113942966 113943175 -35573862 - B3 SINE B2 -5 211 1 9 1454 540 278 76 22 chr6 113944005 113944189 -35572848 + B3A SINE B2 2 195 -3 9 1454 429 20 0 0 chr6 113944554 113944604 -35572433 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1454 435 38 0 0 chr6 113945473 113945526 -35571511 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1454 973 314 40 38 chr6 113946017 113946414 -35570623 - MTD LTR MaLR -19 400 3 9 1454 738 270 171 27 chr6 113946823 113947268 -35569769 + MTE-int LTR MaLR 3 511 -1069 9 1454 1458 130 130 31 chr6 113947260 113947352 -35569685 + ORR1C2 LTR MaLR 63 147 -237 9 1454 510 17 0 0 chr6 113947352 113947411 -35569626 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 1454 492 59 0 0 chr6 113947411 113947478 -35569559 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 1454 1458 130 130 31 chr6 113947478 113947677 -35569360 + ORR1C2 LTR MaLR 148 382 -2 9 1454 2618 210 41 31 chr6 113947678 113948293 -35568744 + ORR1C2-int LTR MaLR 2 622 -887 9 1454 274 186 102 0 chr6 113948320 113948379 -35568658 + ORR1C2-int LTR MaLR 886 950 -1013 9 1454 297 330 10 0 chr6 113948667 113948767 -35568270 - MER2 DNA MER2_type 0 345 245 9 1454 922 296 17 53 chr6 113948854 113949154 -35567883 - B4A SINE B4 -3 289 1 9 1454 600 260 8 1 chr6 113949373 113949511 -35567526 + RSINE1 SINE B4 2 141 -24 9 1454 441 54 0 0 chr6 113949511 113949567 -35567470 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1454 243 0 0 0 chr6 113949567 113949593 -35567444 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 9 1454 673 187 321 7 chr6 113951667 113951940 -35565097 - MTE2b LTR MaLR -8 371 13 9 1454 596 241 105 6 chr6 113952141 113952312 -35564725 + ORR1D1 LTR MaLR 3 190 -184 9 1454 180 111 0 0 chr6 113952589 113952616 -35564421 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1454 1643 163 64 0 chr6 113952637 113952932 -35564105 + ORR1B1 LTR MaLR 81 394 0 9 1454 336 127 16 0 chr6 113953094 113953157 -35563880 + L1MB2 LINE L1 6103 6166 -5 9 1454 1186 54 0 0 chr6 113953218 113953365 -35563672 - B1_Mus2 SINE Alu 0 147 1 9 1454 392 369 25 12 chr6 113954286 113954448 -35562589 - MIR SINE MIR -70 192 29 9 1454 1228 243 83 18 chr6 113954572 113954899 -35562138 + MTE2a LTR MaLR 1 348 -31 9 1454 310 323 149 19 chr6 113957235 113957396 -35559641 - MER2 DNA MER2_type -159 186 5 9 1454 285 169 0 0 chr6 113957687 113957746 -35559291 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1454 369 0 0 0 chr6 113957746 113957787 -35559250 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 1454 183 394 0 0 chr6 113958026 113958092 -35558945 + MIR3 SINE MIR 104 169 -39 9 1454 533 229 27 107 chr6 113958092 113958241 -35558796 + ORR1E LTR MaLR 4 150 -209 9 1454 180 111 0 0 chr6 113958311 113958338 -35558699 + (CCCTG)n Simple_repeat Simple_repeat 2 28 0 9 1454 194 231 63 48 chr6 113958463 113958546 -35558491 - MIR SINE MIR -114 154 60 9 1454 409 305 76 0 chr6 113959123 113959254 -35557783 - MIRb SINE MIR -75 193 53 9 1454 180 143 0 0 chr6 113959690 113959718 -35557319 + MIRm SINE MIR 232 259 -17 9 1454 374 328 80 82 chr6 113960036 113960276 -35556761 + L3 LINE CR1 4012 4257 -232 9 1454 669 0 0 0 chr6 113960276 113960362 -35556675 + L1Md_A LINE L1 6496 6581 -1 9 1454 374 328 80 82 chr6 113960362 113960586 -35556451 + L3 LINE CR1 4258 4474 -15 9 1454 1136 238 21 29 chr6 113962329 113962610 -35554427 + B4 SINE B4 3 281 -11 9 1454 208 291 51 0 chr6 113963318 113963397 -35553640 + MIRm SINE MIR 70 152 -124 9 1454 204 40 0 0 chr6 113964487 113964512 -35552525 + (TCCCC)n Simple_repeat Simple_repeat 5 29 0 9 1454 329 313 58 63 chr6 113965027 113965201 -35551836 + L2b LINE L2 2984 3156 -219 9 1454 1738 273 137 21 chr6 113966061 113966836 -35550201 + L1MC1 LINE L1 5451 6315 -18 9 1454 453 312 87 0 chr6 113966843 113966981 -35550056 + RSINE1 SINE B4 2 151 -14 9 1454 306 0 0 0 chr6 113966982 113967016 -35550021 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1454 198 339 38 60 chr6 113967016 113967201 -35549836 - MIRb SINE MIR -81 187 7 9 1454 25 0 0 0 chr6 113967255 113967280 -35549757 + AT_rich Low_complexity Low_complexity 1 25 0 9 1454 843 255 19 19 chr6 113967975 113968191 -35548846 - ID_B1 SINE B4 -6 218 3 9 1454 234 283 40 89 chr6 113968228 113968273 -35548764 + L2b LINE L2 3328 3375 -51 9 1454 396 0 0 0 chr6 113968273 113968317 -35548720 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1454 234 283 40 89 chr6 113968317 113968372 -35548665 + L2b LINE L2 3376 3423 -3 9 1454 348 309 59 94 chr6 113968443 113968814 -35548223 + Lx8 LINE L1 7116 7473 0 9 1454 229 232 81 97 chr6 113969577 113969701 -35547336 - MIR SINE MIR -32 230 109 9 1454 243 313 0 12 chr6 113970051 113970135 -35546902 - L2b LINE L2 -209 3166 3084 9 1454 279 0 0 0 chr6 113970918 113970949 -35546088 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1454 345 47 0 0 chr6 113972488 113972531 -35544506 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1454 1132 273 63 19 chr6 113973823 113974187 -35542850 - MTD LTR MaLR -14 386 3 9 1454 698 0 12 0 chr6 113974207 113974289 -35542748 + (TG)n Simple_repeat Simple_repeat 2 84 0 9 1454 220 189 19 19 chr6 113974306 113974360 -35542677 - MIRm SINE MIR -108 168 115 9 1454 37 52 0 0 chr6 113974839 113974897 -35542140 + AT_rich Low_complexity Low_complexity 1 58 0 9 1454 189 0 0 0 chr6 113974937 113974958 -35542079 + (TA)n Simple_repeat Simple_repeat 1 21 0 9 1454 770 263 23 14 chr6 113975347 113975567 -35541470 + ID_B1 SINE B4 1 222 -2 9 1454 351 60 0 0 chr6 113977543 113977593 -35539444 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1454 697 291 48 26 chr6 113977605 113977877 -35539160 - B4A SINE B4 -14 278 1 9 1454 220 191 85 0 chr6 113978900 113978947 -35538090 - MIR3 SINE MIR -54 154 104 9 1454 23 33 0 0 chr6 113979067 113979097 -35537940 + AT_rich Low_complexity Low_complexity 1 30 0 1 1454 321 89 0 0 chr6 113979618 113979663 -35537374 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1 1454 1030 169 0 17 chr6 113979691 113979871 -35537166 - B3 SINE B2 -6 210 34 1 1454 414 0 0 0 chr6 113979873 113979919 -35537118 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1454 736 84 19 0 chr6 113979919 113980026 -35537011 - B1_Mus1 SINE Alu -1 147 39 1 1454 329 305 0 0 chr6 113981101 113981183 -35535854 + L2b LINE L2 3294 3375 0 1 1454 280 299 37 9 chr6 113981293 113981401 -35535636 - L1MC4a LINE L1 -1 7881 7771 1 1454 368 229 145 5 chr6 113981545 113981675 -35535362 - L1ME3 LINE L1 -450 5909 5759 1 1454 450 151 0 0 chr6 113981780 113981886 -35535151 + CT-rich Low_complexity Low_complexity 1 106 0 1 1454 672 94 0 113 chr6 113981885 113982088 -35534949 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1454 277 260 71 80 chr6 113982451 113982564 -35534473 + MLT1H LTR MaLR 236 347 -202 1 1454 457 103 41 0 chr6 113983257 113983354 -35533683 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 1 1454 324 263 39 0 chr6 113983847 113983945 -35533092 - MIR SINE MIR -56 152 47 1 1454 263 206 59 0 chr6 113984160 113984228 -35532809 + MIR SINE MIR 78 149 -59 1 1454 507 95 0 0 chr6 113984651 113984725 -35532312 + (CCAA)n Simple_repeat Simple_repeat 1 74 0 1 1454 331 381 14 7 chr6 113985613 113985784 -35531253 + L1ME4a LINE L1 1857 1996 -13 1 1454 462 180 0 0 chr6 113986395 113986495 -35530542 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1454 546 243 43 14 chr6 113986497 113986635 -35530402 - B4 SINE B4 -150 142 1 1 1454 771 290 81 37 chr6 113987205 113987502 -35529535 - MER2 DNA MER2_type -27 318 9 1 1454 443 308 23 99 chr6 113987714 113988028 -35529009 + MER74A LTR ERVL 39 328 -230 1 1454 314 313 60 0 chr6 113988066 113988200 -35528837 + MER74A LTR ERVL 392 533 -25 1 1454 473 185 0 8 chr6 113988319 113988439 -35528598 + (TG)n Simple_repeat Simple_repeat 1 119 0 1 1454 305 204 0 0 chr6 113988439 113988493 -35528544 - tRNA-Ala-GCY_ tRNA tRNA -19 56 3 1 1454 372 152 0 0 chr6 113988683 113988749 -35528288 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1454 276 256 93 53 chr6 113989512 113989684 -35527353 + L2c LINE L2 3004 3179 -196 1 1454 281 257 162 0 chr6 113990044 113990149 -35526888 + MER94 DNA AcHobo 13 134 0 1 1454 207 322 132 11 chr6 113990152 113990243 -35526794 + L2c LINE L2 3274 3375 0 1 1454 432 0 0 0 chr6 113990891 113990939 -35526098 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1454 203 286 39 52 chr6 113990999 113991128 -35525909 + MIRc SINE MIR 38 164 -112 1 1454 21 36 0 0 chr6 113991691 113991719 -35525318 + GC_rich Low_complexity Low_complexity 1 28 0 1 1454 288 77 0 0 chr6 113991926 113991965 -35525072 + (CCG)n Simple_repeat Simple_repeat 2 40 0 1 1454 23 0 0 0 chr6 113991971 113991994 -35525043 + GC_rich Low_complexity Low_complexity 1 23 0 1 1454 200 172 0 17 chr6 113991996 113992055 -35524982 + C-rich Low_complexity Low_complexity 5 62 0 1 1454 235 286 8 25 chr6 113992066 113992188 -35524849 + C-rich Low_complexity Low_complexity 6 125 0 1 1454 2495 147 5 5 chr6 113993401 113993811 -35523226 + MTC LTR MaLR 1 410 -11 1 1454 672 171 38 15 chr6 113994057 113994188 -35522849 + B1F SINE Alu 16 149 0 1 1454 393 327 117 32 chr6 113994554 113994798 -35522239 - MER102a DNA MER1_type -77 253 4 1 1454 216 362 12 0 chr6 113995154 113995234 -35521803 + L3 LINE CR1 2079 2159 -2330 1 1454 377 290 21 0 chr6 113995563 113995656 -35521381 + B4A SINE B4 1 95 -197 1 1454 479 45 15 0 chr6 113995696 113995762 -35521275 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1454 249 270 0 0 chr6 113995831 113995931 -35521106 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1454 190 326 43 11 chr6 113996220 113996313 -35520724 - L2c LINE L2 -48 3339 3244 1 1454 640 64 21 0 chr6 113996416 113996510 -35520527 + (TG)n Simple_repeat Simple_repeat 1 96 0 1 1454 1308 246 70 9 chr6 113996659 113997004 -35520033 - ORR1D2 LTR MaLR 0 370 5 1 1454 270 211 0 0 chr6 113997045 113997102 -35519935 - ID4_ SINE ID -25 58 2 1 1454 1327 286 71 26 chr6 113997409 113997974 -35519063 + L1MA4 LINE L1 5194 5762 -538 1 1454 543 90 0 0 chr6 113997974 113998052 -35518985 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1454 1327 285 76 26 chr6 113998052 113998198 -35518839 + L1MA4 LINE L1 5763 5941 -359 1 1454 1640 21 0 0 chr6 113998356 113998549 -35518488 + B2_Mm1t SINE B2 1 193 0 1 1454 246 247 22 45 chr6 113998565 113998654 -35518383 + GA-rich Low_complexity Low_complexity 5 91 0 1 1454 315 0 0 0 chr6 113998911 113998946 -35518091 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1454 249 364 79 23 chr6 113999823 114000000 -35517037 - MER102b DNA MER1_type -64 277 91 1 1454 323 273 101 0 chr6 114000509 114000608 -35516429 + LTR16C LTR ERVL 372 480 -9 1 1454 1575 258 113 31 chr6 114001102 114001901 -35515136 + Lx9 LINE L1 6537 7487 -157 2 1454 2675 122 22 7 chr6 114001901 114002314 -35514723 + MTC LTR MaLR 3 421 0 3 1454 607 273 113 49 chr6 114002314 114002462 -35514575 + Lx9 LINE L1 7342 7625 -19 2 1454 180 206 0 0 chr6 114002756 114002790 -35514247 + L2b LINE L2 3332 3365 -10 4 1454 687 243 104 33 chr6 114004865 114005014 -35512023 + B3 SINE B2 2 167 -49 5 1454 476 100 0 12 chr6 114005014 114005095 -35511942 + (CATA)n Simple_repeat Simple_repeat 4 83 0 6 1454 687 243 104 33 chr6 114005095 114005128 -35511909 + B3 SINE B2 168 197 -19 5 1454 21 0 0 0 chr6 114005294 114005315 -35511722 + AT_rich Low_complexity Low_complexity 1 21 0 7 1454 355 299 17 17 chr6 114005586 114005705 -35511332 - PB1D7 SINE Alu -1 119 1 8 1454 682 261 51 59 chr6 114006153 114006389 -35510648 - B4A SINE B4 -53 239 6 9 1454 300 323 42 0 chr6 114006659 114006755 -35510282 - MER3 DNA MER1_type -1 208 109 1 1454 316 314 25 31 chr6 114006946 114007107 -35509930 + (TATATG)n Simple_repeat Simple_repeat 1 160 0 1 1454 358 356 0 32 chr6 114007049 114007235 -35509802 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1454 363 371 6 6 chr6 114007259 114007435 -35509602 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1454 1114 281 39 7 chr6 114007455 114007760 -35509277 - MLT1A0 LTR MaLR -31 334 20 1 1454 248 315 0 0 chr6 114008858 114008912 -35508125 - ID4_ SINE ID -16 67 14 1 1454 1138 254 47 11 chr6 114009329 114009604 -35507433 - B4 SINE B4 0 292 8 1 1454 253 195 27 18 chr6 114010925 114010981 -35506056 - L2b LINE L2 -40 3386 3287 1 1454 203 205 0 0 chr6 114012373 114012412 -35504625 - MIRm SINE MIR -15 261 223 1 1454 387 0 0 0 chr6 114013043 114013086 -35503951 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1454 261 0 0 0 chr6 114013285 114013314 -35503723 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1454 545 222 0 14 chr6 114013381 114013527 -35503510 + (TGGG)n Simple_repeat Simple_repeat 3 146 0 2 1454 251 336 55 18 chr6 114013539 114013648 -35503389 - MIRc SINE MIR -155 113 1 2 1454 774 202 0 0 chr6 114014291 114014459 -35502578 + (CA)n Simple_repeat Simple_repeat 1 168 0 2 1454 513 267 0 0 chr6 114014449 114014625 -35502412 + (TA)n Simple_repeat Simple_repeat 1 176 0 2 1454 865 253 104 4 chr6 114014639 114014869 -35502168 + B4 SINE B4 5 257 -35 2 1454 432 0 0 0 chr6 114014869 114014917 -35502120 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1454 186 43 0 0 chr6 114014970 114014993 -35502044 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1454 268 317 0 0 chr6 114015728 114015810 -35501227 + (TG)n Simple_repeat Simple_repeat 2 83 0 2 1454 2319 175 8 3 chr6 114016053 114016442 -35500595 - Lx5 LINE L1 0 7050 6660 2 1454 346 239 212 8 chr6 114016602 114016720 -35500317 - RSINE1 SINE B4 -22 143 2 2 1454 279 0 0 0 chr6 114016775 114016806 -35500231 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1454 1206 36 0 0 chr6 114016806 114016944 -35500093 - B1_Mm SINE Alu -9 138 1 3 1454 691 274 80 106 chr6 114016984 114017458 -35499579 + MLT1G LTR MaLR 39 455 -34 3 1454 710 117 8 0 chr6 114017603 114017723 -35499314 + (TG)n Simple_repeat Simple_repeat 2 122 0 3 1454 645 234 246 9 chr6 114017726 114017950 -35499087 - B4A SINE B4 -14 278 2 3 1454 1049 218 0 0 chr6 114018032 114018220 -35498817 + B3 SINE B2 29 216 0 3 1454 424 293 174 20 chr6 114018247 114018494 -35498543 + B4A SINE B4 2 286 -6 3 1454 299 258 112 10 chr6 114018917 114019015 -35498022 + RSINE1 SINE B4 15 122 -43 3 1454 234 0 0 0 chr6 114019069 114019095 -35497942 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1454 984 139 21 8 chr6 114019156 114019396 -35497641 + (TCCA)n Simple_repeat Simple_repeat 1 243 0 3 1454 352 320 183 34 chr6 114019534 114019802 -35497235 + ORR1E LTR MaLR 52 359 0 4 1454 392 312 43 24 chr6 114019999 114020163 -35496874 + HAL1-2a_MD LINE L1 2326 2492 -532 4 1454 402 147 0 0 chr6 114020500 114020568 -35496469 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1454 322 321 60 0 chr6 114020647 114020731 -35496306 - PB1D10 SINE Alu -27 90 2 4 1454 249 230 87 54 chr6 114020655 114020747 -35496290 - MT2B2 LTR ERVL -344 240 146 4 1454 213 39 0 0 chr6 114020759 114020785 -35496252 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1454 210 71 0 0 chr6 114020939 114020967 -35496070 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 4 1454 892 241 5 20 chr6 114021252 114021451 -35495586 + B3A SINE B2 3 198 0 4 1454 279 0 0 0 chr6 114021457 114021488 -35495549 + (CAA)n Simple_repeat Simple_repeat 2 32 0 4 1454 1134 266 29 0 chr6 114022418 114022696 -35494341 + B4A SINE B4 1 286 -6 4 1454 388 276 37 38 chr6 114022942 114023108 -35493929 - MLT1A0 LTR MaLR -12 367 218 5 1454 231 291 18 0 chr6 114023285 114023340 -35493697 + RLTR9B2 LTR ERVK 4 59 -361 5 1454 649 264 138 0 chr6 114023827 114023986 -35493051 + B3A SINE B2 2 182 -16 5 1454 288 322 128 20 chr6 114024631 114024780 -35492257 - MER5A DNA MER1_type -24 165 1 5 1454 411 209 105 42 chr6 114027127 114027222 -35489815 - PB1D10 SINE Alu 0 117 17 5 1454 623 208 25 0 chr6 114027748 114027868 -35489169 - B3A SINE B2 -75 123 1 5 1454 224 191 0 45 chr6 114028450 114028538 -35488499 + GA-rich Low_complexity Low_complexity 3 86 0 5 1454 291 255 4 48 chr6 114028887 114029003 -35488034 + MIRc SINE MIR 66 180 -96 5 1454 750 237 222 8 chr6 114029225 114029459 -35487578 + B4 SINE B4 3 286 -6 5 1454 387 0 0 0 chr6 114029495 114029538 -35487499 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1454 1036 309 88 25 chr6 114030497 114031500 -35485537 + L1MA4 LINE L1 4834 5930 -370 6 1454 499 244 12 6 chr6 114031569 114031742 -35485295 + (TATATG)n Simple_repeat Simple_repeat 3 176 0 6 1454 213 256 0 0 chr6 114031766 114031848 -35485189 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 6 1454 320 287 9 18 chr6 114031857 114031967 -35485070 + (TATG)n Simple_repeat Simple_repeat 2 110 0 6 1454 213 240 0 0 chr6 114031968 114032043 -35484994 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1454 726 66 0 0 chr6 114032081 114032172 -35484865 + B2_Mm2 SINE B2 74 164 -31 6 1454 362 348 0 12 chr6 114032183 114032346 -35484691 + (TATG)n Simple_repeat Simple_repeat 4 164 0 6 1455 335 312 72 88 chr6 114032642 114032835 -35484202 - MIR SINE MIR -74 194 5 6 1455 181 320 119 48 chr6 114032873 114033083 -35483954 + L2c LINE L2 2939 3163 -224 6 1455 431 249 108 16 chr6 114033239 114033366 -35483671 + PB1D10 SINE Alu 6 135 -12 6 1455 1118 123 11 4 chr6 114033742 114034011 -35483026 + (TCCA)n Simple_repeat Simple_repeat 1 271 0 6 1455 252 279 12 48 chr6 114034979 114035062 -35481975 - LTR90A LTR LTR -38 938 859 7 1455 213 132 0 0 chr6 114035505 114035543 -35481494 + (CAGG)n Simple_repeat Simple_repeat 1 38 0 7 1455 766 239 94 21 chr6 114035584 114035776 -35481261 + B3 SINE B2 2 207 -9 7 1455 1139 244 50 4 chr6 114036005 114036285 -35480752 + ORR1E LTR MaLR 3 295 -64 7 1455 228 100 0 0 chr6 114036296 114036336 -35480701 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 7 1455 339 195 12 105 chr6 114036336 114036353 -35480684 + ORR1E LTR MaLR 282 297 -62 7 1455 248 0 0 30 chr6 114036353 114036386 -35480651 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 7 1455 394 179 0 1 chr6 114036386 114036454 -35480583 + ORR1E LTR MaLR 298 368 -2 7 1455 822 207 0 0 chr6 114036479 114036614 -35480423 - RSINE1 SINE B4 -28 137 3 7 1455 215 314 0 44 chr6 114036881 114036971 -35480066 + GA-rich Low_complexity Low_complexity 1 86 0 7 1455 189 0 0 0 chr6 114037362 114037383 -35479654 + (TTAGGG)n Simple_repeat Simple_repeat 2 22 0 7 1455 269 285 164 30 chr6 114038958 114039092 -35477945 - MIRm SINE MIR -124 152 1 7 1455 237 196 0 0 chr6 114039141 114039192 -35477845 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1455 188 289 56 28 chr6 114039255 114039362 -35477675 - MIRb SINE MIR -86 182 73 8 1455 1048 122 27 32 chr6 114041078 114041264 -35475773 + B2_Mm2 SINE B2 3 187 -8 8 1455 24 0 0 0 chr6 114042524 114042548 -35474489 + GC_rich Low_complexity Low_complexity 1 24 0 8 1455 468 0 0 0 chr6 114043047 114043099 -35473938 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1455 649 292 84 118 chr6 114043428 114043961 -35473076 + RLTR18 LTR ERVK 33 491 -125 8 1455 789 179 63 14 chr6 114045388 114045530 -35471507 + B1_Mur4 SINE Alu 2 150 0 8 1455 920 286 141 55 chr6 114045807 114046317 -35470720 - MLT2B3 LTR ERVL 0 554 1 8 1455 351 0 0 0 chr6 114046494 114046533 -35470504 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1455 492 315 36 24 chr6 114048202 114048368 -35468669 - MER5B DNA MER1_type 0 178 11 8 1455 313 217 17 0 chr6 114048479 114048539 -35468498 - B4A SINE B4 -13 279 219 9 1455 440 322 31 49 chr6 114048534 114048697 -35468340 - RSINE1 SINE B4 -4 161 2 9 1455 301 375 52 10 chr6 114048697 114048887 -35468150 + MLT1I LTR MaLR 201 398 -13 9 1455 1298 103 11 0 chr6 114050001 114050176 -35466861 + B2_Mm1t SINE B2 1 177 -16 9 1455 336 142 0 39 chr6 114050210 114050277 -35466760 + B2_Mm2 SINE B2 47 109 -107 9 1455 1376 228 7 20 chr6 114051392 114051688 -35465349 + B4A SINE B4 1 292 0 9 1455 1409 95 95 0 chr6 114052817 114053038 -35463999 - L1Md_T LINE L1 0 6582 6341 9 1455 278 332 62 48 chr6 114053781 114053990 -35463047 + MIRb SINE MIR 13 224 -44 9 1455 210 214 17 51 chr6 114055797 114055856 -35461181 + CT-rich Low_complexity Low_complexity 4 60 0 9 1455 232 278 68 14 chr6 114055858 114055931 -35461106 - ID4_ SINE ID -3 80 4 9 1455 378 0 0 0 chr6 114056514 114056556 -35460481 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1455 1077 197 34 0 chr6 114056894 114057102 -35459935 + B3 SINE B2 2 216 0 1 1455 368 367 85 15 chr6 114057251 114057522 -35459515 + Tigger5 DNA MER2_type 2113 2402 -4 1 1455 605 266 97 7 chr6 114057934 114058089 -35458948 + B3A SINE B2 14 182 -16 1 1455 633 47 0 0 chr6 114058113 114058198 -35458839 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1455 261 0 0 0 chr6 114058198 114058226 -35458811 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1455 7737 35 1 7 chr6 114058248 114059162 -35457875 + L1Md_F2 LINE L1 5674 6582 0 1 1455 1348 195 146 46 chr6 114059340 114059516 -35457521 - ORR1C2 LTR MaLR 0 384 189 1 1455 237 33 0 0 chr6 114059516 114059546 -35457491 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 1 1455 1348 195 146 46 chr6 114059546 114059718 -35457319 - ORR1C2 LTR MaLR -196 188 3 1 1455 180 0 0 0 chr6 114060599 114060619 -35456418 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1455 283 340 40 116 chr6 114061277 114061450 -35455587 - RSINE1 SINE B4 -1 164 5 1 1455 844 212 114 0 chr6 114061479 114061672 -35455365 - B3 SINE B2 -1 215 1 1 1455 320 244 20 91 chr6 114061777 114061876 -35455161 + MT2B LTR ERVL 149 240 -361 1 1455 371 324 18 27 chr6 114061789 114061900 -35455137 + ID_B1 SINE B4 80 189 -35 1 1455 612 200 19 0 chr6 114061802 114061907 -35455130 + B1_Mur1 SINE Alu 12 118 -31 1 1455 544 272 192 21 chr6 114061920 114062295 -35454742 + Lx8 LINE L1 6974 7412 -61 1 1455 2424 210 46 14 chr6 114062309 114062826 -35454211 + RMER5 LTR ERV1 1 534 0 1 1455 323 239 9 0 chr6 114062992 114063101 -35453936 + (TTAAA)n Simple_repeat Simple_repeat 1 110 0 1 1455 229 370 0 32 chr6 114063114 114063209 -35453828 - RSINE1 SINE B4 0 165 74 1 1455 684 36 0 0 chr6 114063714 114063797 -35453240 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 1 1455 231 218 0 0 chr6 114063810 114063865 -35453172 + CT-rich Low_complexity Low_complexity 1 55 0 1 1455 371 56 19 0 chr6 114063876 114063930 -35453107 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1455 268 359 0 23 chr6 114064327 114064458 -35452579 + GA-rich Low_complexity Low_complexity 3 130 0 1 1455 294 208 0 13 chr6 114065281 114065359 -35451678 + L1M5 LINE L1 3405 3481 -2665 1 1455 560 288 113 66 chr6 114065435 114065556 -35451481 + L1MA7 LINE L1 5645 5791 -500 1 1455 486 0 0 0 chr6 114065556 114065610 -35451427 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1455 560 288 113 66 chr6 114065610 114065769 -35451268 + L1MA7 LINE L1 5792 5955 -336 1 1455 1266 163 18 26 chr6 114065769 114065996 -35451041 - URR1A DNA MER1_type -1 225 1 1 1455 560 288 113 66 chr6 114065996 114066324 -35450713 + L1MA7 LINE L1 5956 6282 -9 1 1455 356 352 171 7 chr6 114066355 114066624 -35450413 + L1MD LINE L1 3638 3950 -2196 1 1455 880 263 0 40 chr6 114066660 114066882 -35450155 + ID_B1 SINE B4 1 213 -11 1 1455 570 331 37 51 chr6 114067129 114067241 -35449796 + L1M5 LINE L1 2750 2861 -3285 1 1455 3054 64 15 8 chr6 114067241 114067634 -35449403 - MTA_Mm LTR MaLR 0 396 1 1 1455 570 331 37 51 chr6 114067634 114067817 -35449220 + L1M5 LINE L1 2862 3041 -3105 1 1455 774 235 0 70 chr6 114067826 114068027 -35449010 + B3A SINE B2 12 198 0 1 1455 623 262 0 0 chr6 114068045 114068167 -35448870 + RSINE1 SINE B4 3 124 -41 1 1455 477 0 0 0 chr6 114068167 114068220 -35448817 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1455 321 279 65 130 chr6 114068222 114068275 -35448762 + L1MD LINE L1 4270 4317 -1829 1 1455 898 254 48 0 chr6 114068275 114068464 -35448573 + B3A SINE B2 1 198 0 1 1455 321 279 65 130 chr6 114068464 114068595 -35448442 + L1MD LINE L1 4318 4442 -1704 1 1455 222 287 73 128 chr6 114068596 114068624 -35448413 - B3A SINE B2 -8 190 113 1 1455 369 194 72 117 chr6 114068624 114068735 -35448302 - B4 SINE B4 0 292 187 1 1455 222 287 73 128 chr6 114068735 114068760 -35448277 - B3A SINE B2 -8 112 36 1 1455 316 265 118 22 chr6 114068760 114068895 -35448142 + MIR SINE MIR 2 149 -113 1 1455 301 275 61 3 chr6 114069388 114069506 -35447531 + B1_Mm SINE Alu 1 147 0 1 1455 930 285 159 30 chr6 114069517 114070128 -35446909 + L1MB1 LINE L1 5272 5961 -228 1 1455 385 319 140 0 chr6 114070170 114070327 -35446710 + MTEa LTR MaLR 13 191 -168 1 1455 448 254 42 8 chr6 114070522 114070641 -35446396 + MTEa LTR MaLR 247 369 -10 1 1455 317 280 33 126 chr6 114070656 114070807 -35446230 + L1MB1 LINE L1 6030 6166 -23 1 1455 591 212 0 27 chr6 114070838 114071022 -35446015 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 1 1455 269 269 177 50 chr6 114071447 114071588 -35445449 - MER5A1 DNA MER1_type -6 160 2 1 1455 1892 186 78 5 chr6 114072025 114072408 -35444629 - MTD LTR MaLR -8 411 1 1 1455 185 277 21 0 chr6 114072615 114072662 -35444375 - MIRb SINE MIR 0 268 221 1 1455 426 69 0 0 chr6 114072792 114072850 -35444187 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1455 223 304 109 73 chr6 114072949 114073059 -35443978 + PB1D9 SINE Alu 1 114 -6 1 1455 453 242 32 0 chr6 114073010 114073105 -35443932 + B4 SINE B4 172 269 -23 1 1455 609 14 0 0 chr6 114073105 114073175 -35443862 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1455 421 305 102 0 chr6 114073420 114073548 -35443489 + B1F2 SINE Alu 1 141 -8 1 1455 453 294 119 59 chr6 114073568 114074151 -35442886 + L1MB7 LINE L1 5413 6004 -180 1 1455 384 233 47 0 chr6 114074923 114075009 -35442028 + MER44D DNA MER2_type 26 115 -590 1 1455 453 195 172 0 chr6 114075026 114075074 -35441963 - B1_Mur2 SINE Alu -47 102 55 1 1455 771 42 0 0 chr6 114075074 114075169 -35441868 + (TCC)n Simple_repeat Simple_repeat 2 96 0 1 1455 453 195 172 0 chr6 114075169 114075207 -35441830 - B1_Mur2 SINE Alu -95 54 2 1 1455 21 36 0 0 chr6 114075253 114075281 -35441756 + AT_rich Low_complexity Low_complexity 1 28 0 1 1455 375 202 139 0 chr6 114076020 114076099 -35440938 + MIRc SINE MIR 83 172 -96 1 1455 714 276 170 22 chr6 114077981 114078252 -35438785 + MTE2b LTR MaLR 2 312 -67 1 1455 1673 201 102 13 chr6 114078894 114079277 -35437760 - MTD LTR MaLR 0 419 3 1 1455 242 301 71 35 chr6 114080436 114080605 -35436432 - MIRb SINE MIR -89 179 1 1 1455 28 48 0 0 chr6 114081209 114081251 -35435786 + GC_rich Low_complexity Low_complexity 1 42 0 1 1455 30 45 0 0 chr6 114081341 114081385 -35435652 + GC_rich Low_complexity Low_complexity 1 44 0 1 1455 1070 288 36 0 chr6 114083903 114084181 -35432856 + B4A SINE B4 1 288 -4 1 1455 315 0 0 0 chr6 114084232 114084267 -35432770 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1455 270 302 138 21 chr6 114084290 114084470 -35432567 - MIR3 SINE MIR -56 206 10 1 1455 302 281 0 0 chr6 114085307 114085371 -35431666 + MER102b DNA MER1_type 90 153 -188 1 1455 918 211 65 5 chr6 114085371 114085571 -35431466 - B3 SINE B2 -1 215 4 1 1455 266 316 63 127 chr6 114085571 114085727 -35431310 + MER102b DNA MER1_type 147 293 -48 1 1455 393 22 0 0 chr6 114085761 114085807 -35431230 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1455 298 282 51 0 chr6 114085914 114085992 -35431045 - MER117 DNA MER1_type -42 155 74 1 1455 380 253 0 27 chr6 114086565 114086679 -35430358 + ID4 SINE ID 11 116 -36 1 1455 372 280 32 11 chr6 114086950 114087044 -35429993 - PB1D10 SINE Alu -7 110 15 1 1455 26 0 0 0 chr6 114087162 114087188 -35429849 + AT_rich Low_complexity Low_complexity 1 26 0 1 1455 870 113 0 0 chr6 114087237 114087370 -35429667 + (CCTG)n Simple_repeat Simple_repeat 2 134 0 1 1455 443 216 78 0 chr6 114087403 114087505 -35429532 - PB1D7 SINE Alu -10 110 1 1 1455 204 67 0 0 chr6 114087569 114087599 -35429438 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1455 199 155 0 159 chr6 114088250 114088319 -35428718 - L2c LINE L2 -222 3165 3108 1 1455 195 42 0 0 chr6 114089345 114089369 -35427668 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 1 1455 259 298 106 73 chr6 114089532 114089655 -35427382 - MER91C DNA Tip100 -13 127 1 1 1455 495 296 163 72 chr6 114090257 114090588 -35426449 - MLT1A0 LTR MaLR -2 363 3 1 1455 186 189 0 0 chr6 114090699 114090736 -35426301 + T-rich Low_complexity Low_complexity 1 37 0 1 1455 1001 183 71 5 chr6 114090757 114090955 -35426082 - B3 SINE B2 -5 211 1 1 1455 649 281 0 7 chr6 114091017 114091164 -35425873 - B1F2 SINE Alu -2 147 2 1 1455 244 250 86 11 chr6 114091164 114091257 -35425780 - L1M5 LINE L1 -755 5485 5386 1 1455 243 0 0 0 chr6 114091437 114091464 -35425573 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1455 334 336 100 56 chr6 114091854 114092103 -35424934 - L1MD LINE L1 -1442 4704 4445 1 1455 365 290 145 0 chr6 114092403 114092527 -35424510 - RSINE1 SINE B4 -19 146 5 1 1455 243 191 15 60 chr6 114094219 114094353 -35422684 + CT-rich Low_complexity Low_complexity 2 129 0 1 1455 215 311 9 28 chr6 114094365 114094471 -35422566 + CT-rich Low_complexity Low_complexity 4 107 0 1 1455 281 363 60 114 chr6 114095007 114095340 -35421697 - ORR1E LTR MaLR 0 359 45 1 1455 1988 186 52 8 chr6 114095487 114095851 -35421186 - MTC LTR MaLR 0 421 42 1 1455 209 335 92 71 chr6 114096382 114096578 -35420459 - L2b LINE L2 -141 3234 3035 1 1455 647 318 54 142 chr6 114096675 114097104 -35419933 + Tigger7 DNA MER2_type 25 415 -2076 1 1455 194 91 30 0 chr6 114097115 114097148 -35419889 + (TCTCCC)n Simple_repeat Simple_repeat 2 35 0 1 1455 477 0 0 0 chr6 114097165 114097218 -35419819 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1455 324 326 90 21 chr6 114097361 114097505 -35419532 + Tigger7 DNA MER2_type 2336 2489 -2 1 1455 201 218 73 0 chr6 114097721 114097776 -35419261 - L2b LINE L2 -215 3160 3102 1 1455 1715 191 102 11 chr6 114097920 114098302 -35418735 - MTD LTR MaLR -2 417 1 1 1455 754 268 123 11 chr6 114099243 114099504 -35417533 + B4A SINE B4 1 290 -2 1 1455 354 262 79 79 chr6 114099533 114099711 -35417326 - RLTR21 LTR ERVK -320 1252 1075 1 1455 270 0 0 0 chr6 114101743 114101773 -35415264 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1455 1363 262 84 3 chr6 114102872 114103205 -35413832 - ORR1D2 LTR MaLR 0 370 11 1 1455 771 308 203 19 chr6 114103303 114103613 -35413424 - MER44B DNA MER2_type -153 397 31 1 1455 367 246 131 0 chr6 114103812 114103942 -35413095 - L1MB8 LINE L1 -183 5995 5849 1 1455 356 296 58 53 chr6 114104244 114104451 -35412586 - L1MB8 LINE L1 -350 5828 5621 1 1455 486 297 69 42 chr6 114104491 114104635 -35412402 - RSINE1 SINE B4 0 165 18 2 1455 456 19 0 0 chr6 114104649 114104702 -35412335 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1455 253 289 12 0 chr6 114104780 114104863 -35412174 - L1MB8 LINE L1 -680 5494 5411 1 1455 590 285 111 0 chr6 114105025 114105197 -35411840 + MER58A DNA MER1_type 1 191 -33 2 1455 227 240 20 0 chr6 114106324 114106374 -35410663 + MIR SINE MIR 89 139 -69 2 1455 423 262 111 0 chr6 114106379 114106505 -35410532 + MER2 DNA MER2_type 1 140 -205 2 1455 254 313 9 124 chr6 114106561 114106674 -35410363 + MER2 DNA MER2_type 232 331 -14 2 1455 1964 186 94 3 chr6 114107369 114107752 -35409285 + MTD LTR MaLR 1 418 -1 2 1455 218 248 8 110 chr6 114108599 114108717 -35408320 + MIR SINE MIR 28 133 -129 2 1455 208 373 101 8 chr6 114108772 114108891 -35408146 - MIRb SINE MIR -94 174 45 2 1455 372 240 9 119 chr6 114110010 114110119 -35406918 + MLT1I LTR MaLR 315 411 0 2 1455 182 379 63 0 chr6 114110119 114110214 -35406823 - L2c LINE L2 -222 3165 3065 2 1455 215 136 42 83 chr6 114110591 114110639 -35406398 + L2a LINE L2 3351 3396 -30 2 1455 618 253 40 14 chr6 114113624 114113772 -35403265 + B3A SINE B2 1 152 -46 2 1455 750 53 0 0 chr6 114113792 114113887 -35403150 + (CA)n Simple_repeat Simple_repeat 2 96 0 2 1455 424 257 35 0 chr6 114114169 114114282 -35402755 + PB1D10 SINE Alu 1 117 0 2 1455 22 0 0 0 chr6 114114308 114114330 -35402707 + AT_rich Low_complexity Low_complexity 1 22 0 2 1455 538 281 0 0 chr6 114114427 114114541 -35402496 - RSINE1 SINE B4 -49 116 3 2 1455 1926 189 146 101 chr6 114114813 114115765 -35401272 - RMER13B LTR ERVK -66 892 1 2 1455 353 169 34 0 chr6 114115765 114115824 -35401213 - ID_B1 SINE B4 -78 146 86 2 1455 242 325 0 13 chr6 114116369 114116447 -35400590 - MIR SINE MIR -111 151 75 2 1455 859 135 329 0 chr6 114117804 114117974 -35399063 - URR1A DNA MER1_type 0 226 1 2 1455 1288 67 0 11 chr6 114118160 114118342 -35398695 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 2 1455 282 56 0 0 chr6 114118342 114118378 -35398659 + (TCTCC)n Simple_repeat Simple_repeat 3 38 0 2 1455 26 0 0 0 chr6 114118378 114118404 -35398633 + AT_rich Low_complexity Low_complexity 1 26 0 2 1455 243 164 45 0 chr6 114118508 114118575 -35398462 + A-rich Low_complexity Low_complexity 2 71 0 2 1455 391 134 0 24 chr6 114118890 114118974 -35398063 + CT-rich Low_complexity Low_complexity 2 83 0 2 1455 8097 68 3 0 chr6 114119818 114121384 -35395653 - L1_Mus1 LINE L1 0 6567 4998 2 1455 459 232 0 34 chr6 114122369 114122547 -35394490 + (CATATA)n Simple_repeat Simple_repeat 1 172 0 2 1455 236 241 14 36 chr6 114122559 114122697 -35394340 + (CATATA)n Simple_repeat Simple_repeat 1 135 0 2 1455 1191 131 33 0 chr6 114126034 114126217 -35390820 - B2_Mm2 SINE B2 -6 189 1 2 1455 182 373 65 26 chr6 114126745 114126899 -35390138 - MIRb SINE MIR -31 237 78 2 1455 271 290 29 0 chr6 114128822 114128891 -35388146 - Charlie12 DNA MER1_type -2793 80 10 2 1455 320 257 0 0 chr6 114128831 114128901 -35388136 + RMER30 DNA MER1_type 133 202 0 2 1455 277 317 23 61 chr6 114129319 114129450 -35387587 + Charlie4z DNA MER1_type 5 130 -37 2 1455 325 271 130 81 chr6 114129747 114129932 -35387105 - Kanga1 DNA Tc2 -1268 477 284 2 1455 362 272 49 0 chr6 114129974 114130055 -35386982 - RSINE1 SINE B4 -10 155 71 2 1455 821 216 118 11 chr6 114130092 114130279 -35386758 + B3 SINE B2 1 207 -9 2 1455 388 345 89 17 chr6 114131189 114131255 -35385782 + ID SINE ID 1 71 -153 2 1455 333 0 0 0 chr6 114131255 114131292 -35385745 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1455 596 246 36 0 chr6 114131295 114131405 -35385632 + B1_Mur1 SINE Alu 2 115 -34 2 1455 895 263 60 28 chr6 114131534 114131816 -35385221 - B4 SINE B4 0 292 2 2 1455 405 0 0 0 chr6 114132311 114132356 -35384681 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1455 462 61 0 0 chr6 114132356 114132422 -35384615 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 1455 375 337 48 37 chr6 114133352 114133540 -35383497 + ORR1E LTR MaLR 1 190 -169 2 1455 267 227 0 62 chr6 114133542 114133622 -35383415 + CT-rich Low_complexity Low_complexity 5 79 0 2 1455 928 93 0 0 chr6 114134439 114134568 -35382469 - URR1B DNA MER1_type -1 224 96 2 1455 327 151 21 41 chr6 114135261 114135358 -35381679 + (CCCCAG)n Simple_repeat Simple_repeat 2 96 0 2 1455 280 310 42 14 chr6 114135607 114135679 -35381358 - MLT1J LTR MaLR -327 185 112 2 1455 763 264 130 0 chr6 114135744 114135952 -35381085 + B4A SINE B4 57 291 -1 2 1455 1082 136 73 0 chr6 114136385 114136534 -35380503 + B2_Mm2 SINE B2 5 161 -34 2 1455 356 59 20 0 chr6 114136534 114136585 -35380452 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2 1455 1082 136 73 0 chr6 114136585 114136612 -35380425 + B2_Mm2 SINE B2 162 193 -2 2 1455 409 326 38 0 chr6 114139675 114139807 -35377230 + MER117 DNA MER1_type 60 196 -1 2 1455 590 299 44 19 chr6 114140689 114140849 -35376188 + RSINE1 SINE B4 2 165 0 2 1455 31 26 0 0 chr6 114140849 114140887 -35376150 + AT_rich Low_complexity Low_complexity 1 38 0 2 1455 473 279 43 13 chr6 114140921 114141060 -35375977 - B3A SINE B2 -18 198 59 2 1455 1204 144 33 14 chr6 114141041 114141252 -35375785 + MTB_Mm LTR MaLR 193 407 0 2 1455 942 107 99 17 chr6 114141251 114141423 -35375614 + MTB_Mm-int LTR MaLR 2 187 -1071 2 1455 395 239 46 100 chr6 114141353 114141483 -35375554 - B3 SINE B2 -92 124 2 2 1455 215 232 171 14 chr6 114142073 114142143 -35374894 + MIR SINE MIR 72 152 -110 2 1455 351 298 0 0 chr6 114142225 114142383 -35374654 + (TG)n Simple_repeat Simple_repeat 1 158 0 2 1455 191 304 36 0 chr6 114142557 114142613 -35374424 + L2c LINE L2 3252 3309 -78 2 1455 278 245 78 48 chr6 114143374 114143466 -35373571 + Charlie9 DNA MER1_type 5 96 -2661 2 1455 682 211 46 7 chr6 114143466 114143619 -35373418 + RSINE1 SINE B4 3 161 -4 2 1455 716 291 130 14 chr6 114144140 114144433 -35372604 + MER2 DNA MER2_type 19 345 0 2 1455 35 41 0 0 chr6 114145302 114145351 -35371686 + AT_rich Low_complexity Low_complexity 1 49 0 2 1455 717 225 45 23 chr6 114145355 114145532 -35371505 - B3A SINE B2 -16 182 2 2 1455 281 292 35 62 chr6 114145601 114145714 -35371323 - Charlie4 DNA MER1_type -1816 145 36 2 1455 235 351 127 26 chr6 114146669 114146988 -35370049 + L2a LINE L2 2804 3157 -269 2 1455 220 355 48 8 chr6 114148612 114148737 -35368300 + L2a LINE L2 3295 3424 -2 2 1455 560 164 9 0 chr6 114149769 114149879 -35367158 + (TAA)n Simple_repeat Simple_repeat 2 112 0 2 1455 982 24 31 16 chr6 114150130 114150258 -35366779 + B2_Mm1t SINE B2 64 193 0 2 1455 242 204 0 69 chr6 114151400 114151458 -35365579 - L1MEb LINE L1 -5461 609 556 2 1455 228 339 0 0 chr6 114151734 114151793 -35365244 + MER20 DNA MER1_type 24 82 -137 2 1455 292 235 35 23 chr6 114152180 114152267 -35364770 + (TGGA)n Simple_repeat Simple_repeat 3 90 0 2 1455 584 169 26 0 chr6 114152332 114152486 -35364551 + (TGGA)n Simple_repeat Simple_repeat 3 160 0 2 1455 458 321 24 0 chr6 114152503 114152671 -35364366 + (TGGA)n Simple_repeat Simple_repeat 4 175 0 2 1455 394 208 0 40 chr6 114152685 114152810 -35364227 + (TGGA)n Simple_repeat Simple_repeat 3 122 0 2 1455 2124 136 142 10 chr6 114154018 114154427 -35362610 - RMER4A LTR ERVK 0 466 4 2 1455 681 248 7 52 chr6 114154552 114154705 -35362332 - RSINE1 SINE B4 0 165 20 2 1455 832 208 106 5 chr6 114154722 114154930 -35362107 - L1MC1 LINE L1 -226 6107 5879 2 1455 358 355 46 0 chr6 114154937 114155089 -35361948 + MER5A1 DNA MER1_type 1 159 -7 2 1455 411 319 80 0 chr6 114155317 114155455 -35361582 - MER3 DNA MER1_type 0 209 61 2 1455 1560 242 138 23 chr6 114155463 114155487 -35361550 - MT2A LTR ERVL 0 533 518 2 1455 1523 133 0 9 chr6 114155487 114155714 -35361323 - URR1B DNA MER1_type 0 225 1 2 1455 1560 242 138 23 chr6 114155714 114156167 -35360870 - MT2A LTR ERVL -16 517 1 2 1455 275 341 15 30 chr6 114156795 114156928 -35360109 - L1M7 LINE L1 -4572 1646 1516 2 1455 202 0 59 29 chr6 114157143 114157177 -35359860 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1455 1168 65 0 0 chr6 114157177 114157315 -35359722 - B1_Mm SINE Alu -9 138 1 2 1455 280 254 171 26 chr6 114157830 114157947 -35359090 - MIR3 SINE MIR -41 167 34 2 1455 855 264 124 39 chr6 114159318 114159673 -35357364 + Lx8 LINE L1 7088 7472 -1 2 1455 477 269 30 8 chr6 114160126 114160257 -35356780 - RMER15 LTR ERVL -15 560 427 2 1455 238 248 68 124 chr6 114160299 114160460 -35356577 - RMER15 LTR ERVL -418 157 6 2 1455 653 294 74 105 chr6 114160461 114160784 -35356253 - RMER15-int LTR ERVL -335 4664 4352 2 1455 2066 290 71 49 chr6 114160808 114161679 -35355358 - RMER15-int LTR ERVL -2933 2066 1177 2 1455 437 275 45 8 chr6 114161677 114161809 -35355228 - RMER15-int LTR ERVL -4010 989 853 2 1455 491 272 14 22 chr6 114161850 114161989 -35355048 - RMER15-int LTR ERVL -4235 764 627 2 1455 216 0 0 0 chr6 114161990 114162014 -35355023 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1455 256 397 16 0 chr6 114162136 114162262 -35354775 - RMER15-int LTR ERVL -4555 444 317 2 1455 464 237 4 19 chr6 114162335 114162458 -35354579 + MTE2b LTR MaLR 45 166 -213 2 1455 315 285 126 0 chr6 114162877 114163028 -35354009 - L1ME2z LINE L1 -78 6366 6197 2 1456 375 371 70 16 chr6 114163807 114164051 -35352986 + MER2 DNA MER2_type 87 343 -2 2 1456 371 208 82 10 chr6 114164051 114164148 -35352889 + L1MA8 LINE L1 6109 6212 -79 2 1456 399 83 0 0 chr6 114167514 114167574 -35349463 + (TCTG)n Simple_repeat Simple_repeat 1 60 0 2 1456 229 322 0 0 chr6 114167934 114167993 -35349044 - MIR SINE MIR -68 140 82 2 1456 259 209 35 0 chr6 114168099 114168185 -35348852 + (TTTG)n Simple_repeat Simple_repeat 4 92 0 2 1456 1669 130 12 0 chr6 114168217 114168471 -35348566 - Lx4A LINE L1 -1 7057 6801 2 1456 240 86 0 0 chr6 114170109 114170144 -35346893 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 2 1456 289 356 21 34 chr6 114170251 114170412 -35346625 + MLT1J1 LTR MaLR 72 232 -216 2 1456 828 249 31 10 chr6 114170814 114171009 -35346028 + B3 SINE B2 2 200 -16 2 1456 2313 200 40 54 chr6 114171271 114171841 -35345196 - ORR1D-int LTR MaLR -799 571 9 2 1456 324 0 0 0 chr6 114172604 114172640 -35344397 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2 1456 3020 269 33 15 chr6 114172640 114173435 -35343602 - Lx9 LINE L1 -458 7186 6378 2 1456 429 20 0 0 chr6 114173466 114173516 -35343521 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1456 1374 83 28 0 chr6 114173534 114173714 -35343323 + B2_Mm2 SINE B2 2 186 -9 3 1456 207 139 0 0 chr6 114173828 114173864 -35343173 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1456 331 323 83 42 chr6 114174371 114174539 -35342498 + MIRb SINE MIR 78 252 -16 3 1456 322 294 48 10 chr6 114175047 114175150 -35341887 - MIRb SINE MIR -80 188 82 3 1456 1051 129 0 0 chr6 114175197 114175344 -35341693 - B1_Mur2 SINE Alu 0 149 3 3 1456 620 227 49 14 chr6 114175361 114175504 -35341533 - B1F2 SINE Alu -1 148 1 3 1456 569 211 98 0 chr6 114176978 114177101 -35339936 + B1F1 SINE Alu 1 135 -14 3 1456 35 0 0 0 chr6 114177260 114177295 -35339742 + AT_rich Low_complexity Low_complexity 1 35 0 3 1456 196 163 47 0 chr6 114178749 114178792 -35338245 - MIRc SINE MIR -212 56 12 3 1456 191 250 0 0 chr6 114179855 114179899 -35337138 + MIRc SINE MIR 83 126 -142 3 1456 437 264 26 45 chr6 114180973 114181128 -35335909 + L1M5 LINE L1 3133 3284 -2862 3 1456 582 202 115 8 chr6 114181128 114181359 -35335678 - ORR1D2 LTR MaLR 0 370 7 3 1456 687 209 12 54 chr6 114181375 114181542 -35335495 + RSINE1 SINE B4 2 161 -4 3 1456 367 314 82 39 chr6 114182139 114182321 -35334716 + L1M5 LINE L1 3772 3961 -2185 3 1456 785 230 38 38 chr6 114182326 114182538 -35334499 + B3 SINE B2 2 213 -3 3 1456 307 232 24 24 chr6 114182627 114182658 -35334379 + PB1D7 SINE Alu 35 65 -55 3 1456 2078 167 106 5 chr6 114182658 114183037 -35334000 - MTC LTR MaLR 0 421 5 3 1456 307 232 24 24 chr6 114183037 114183089 -35333948 + PB1D7 SINE Alu 66 118 -2 3 1456 205 290 0 31 chr6 114183219 114183283 -35333754 + GA-rich Low_complexity Low_complexity 5 66 0 3 1456 946 294 162 20 chr6 114183734 114184240 -35332797 + L1MC4a LINE L1 6695 7272 -610 3 1456 898 181 119 5 chr6 114184497 114184691 -35332346 + B3 SINE B2 1 216 0 3 1456 336 321 110 56 chr6 114184770 114185120 -35331917 + L1M5 LINE L1 5268 5640 -539 3 1456 256 220 0 0 chr6 114185176 114185226 -35331811 + B3A SINE B2 102 151 -47 3 1456 567 43 0 0 chr6 114185227 114185297 -35331740 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1456 244 239 0 27 chr6 114185912 114185985 -35331052 + GA-rich Low_complexity Low_complexity 1 71 0 3 1456 771 270 6 6 chr6 114186253 114186417 -35330620 - RSINE1 SINE B4 0 165 2 3 1456 302 295 60 8 chr6 114187640 114187774 -35329263 + MIR SINE MIR 34 184 -84 3 1456 549 0 0 0 chr6 114189215 114189276 -35327761 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1456 1756 220 87 33 chr6 114190315 114190412 -35326625 - RCHARR1 DNA MER1_type 0 974 886 3 1456 1200 206 10 0 chr6 114190412 114190621 -35326416 + B3 SINE B2 5 215 -1 3 1456 1756 220 87 33 chr6 114190621 114191005 -35326032 - RCHARR1 DNA MER1_type -89 885 467 3 1456 677 252 57 19 chr6 114191005 114191163 -35325874 + RSINE1 SINE B4 2 165 0 3 1456 231 232 0 0 chr6 114191170 114191226 -35325811 + (CATA)n Simple_repeat Simple_repeat 4 59 0 3 1456 1558 246 94 18 chr6 114191234 114191682 -35325355 - RCHARR1 DNA MER1_type -490 484 3 3 1456 767 155 56 7 chr6 114191688 114191831 -35325206 + B1_Mur4 SINE Alu 1 150 0 3 1456 207 100 0 0 chr6 114191831 114191861 -35325176 + (GGA)n Simple_repeat Simple_repeat 3 32 0 3 1456 915 119 11 6 chr6 114191863 114192040 -35324997 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 1456 227 250 43 54 chr6 114192125 114192218 -35324819 - BC1_Mm scRNA scRNA -53 99 8 3 1456 412 250 54 36 chr6 114192512 114192624 -35324413 - MER2 DNA MER2_type -113 232 119 3 1456 374 324 158 27 chr6 114192880 114193064 -35323973 - MTEa LTR MaLR -169 210 3 3 1456 218 312 60 35 chr6 114193116 114193232 -35323805 - L2b LINE L2 -4 3371 3253 3 1456 292 341 138 13 chr6 114193235 114193467 -35323570 - L2b LINE L2 -8 3367 3107 3 1456 293 231 12 71 chr6 114196610 114196694 -35320343 - MIR SINE MIR -168 94 16 3 1456 189 213 0 0 chr6 114199635 114199682 -35317355 + T-rich Low_complexity Low_complexity 1 47 0 3 1456 333 0 0 0 chr6 114200168 114200205 -35316832 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1456 228 312 12 36 chr6 114200224 114200307 -35316730 - MIR SINE MIR -119 143 63 3 1456 687 290 4 62 chr6 114201273 114201545 -35315492 - MLT2B2 LTR ERVL -257 258 3 3 1456 297 0 0 0 chr6 114203651 114203684 -35313353 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1456 207 0 0 0 chr6 114203721 114203744 -35313293 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1456 276 339 137 8 chr6 114203770 114204011 -35313026 - L2 LINE L2 -338 3081 2810 3 1456 447 19 0 0 chr6 114204012 114204064 -35312973 + (TATG)n Simple_repeat Simple_repeat 2 53 0 3 1456 718 275 0 13 chr6 114204122 114204273 -35312764 - RSINE1 SINE B4 -16 149 1 3 1456 432 0 0 0 chr6 114205527 114205575 -35311462 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1456 216 0 0 0 chr6 114205575 114205598 -35311439 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1456 974 194 3 3 chr6 114205857 114206175 -35310862 + CT-rich Low_complexity Low_complexity 1 318 0 3 1456 478 198 60 51 chr6 114206191 114206308 -35310729 - PB1D9 SINE Alu -1 119 2 3 1456 343 288 32 52 chr6 114206336 114206490 -35310547 - B4 SINE B4 -139 153 3 3 1456 198 0 0 0 chr6 114206616 114206638 -35310399 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 3 1456 405 0 0 0 chr6 114206640 114206685 -35310352 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 3 1456 257 191 14 81 chr6 114206951 114207025 -35310012 + CT-rich Low_complexity Low_complexity 3 71 0 3 1456 540 106 0 0 chr6 114207485 114207570 -35309467 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 1456 260 331 214 31 chr6 114207586 114207745 -35309292 + MIRb SINE MIR 29 216 -52 3 1456 183 256 0 0 chr6 114208443 114208482 -35308555 + MIR SINE MIR 81 119 -89 3 1456 905 70 13 13 chr6 114208537 114208695 -35308342 + (TG)n Simple_repeat Simple_repeat 2 159 0 3 1456 558 0 0 0 chr6 114210225 114210287 -35306750 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1456 222 296 181 9 chr6 114211344 114211460 -35305577 + MIRm SINE MIR 37 172 -104 3 1456 180 26 23 93 chr6 114211575 114211618 -35305419 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 3 1456 196 241 71 71 chr6 114212238 114212323 -35304714 + MIRb SINE MIR 36 120 -148 3 1456 183 286 21 116 chr6 114212445 114212540 -35304497 - L2b LINE L2 -29 3346 3261 3 1456 370 281 7 123 chr6 114212776 114212930 -35304107 - B4A SINE B4 0 292 157 3 1456 533 198 99 0 chr6 114213587 114213688 -35303349 + PB1D10 SINE Alu 2 112 -5 3 1456 244 322 33 11 chr6 114215183 114215274 -35301763 - LTR16C LTR ERVL -6 483 391 3 1456 256 312 146 39 chr6 114215277 114215407 -35301630 - MLT1F1 LTR MaLR -10 559 416 3 1456 230 300 49 24 chr6 114216959 114217041 -35299996 - LTR33 LTR ERVL -333 182 99 3 1456 684 218 23 0 chr6 114217152 114217285 -35299752 + B1_Mur1 SINE Alu 9 144 -5 3 1456 435 201 21 0 chr6 114217440 114217584 -35299453 + (TGAA)n Simple_repeat Simple_repeat 1 147 0 3 1456 792 103 0 0 chr6 114217988 114218104 -35298933 + (GA)n Simple_repeat Simple_repeat 1 116 0 3 1456 186 43 0 0 chr6 114218245 114218268 -35298769 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 3 1456 192 349 36 18 chr6 114218355 114218466 -35298571 - MIR SINE MIR -81 181 69 3 1456 198 0 0 0 chr6 114218518 114218540 -35298497 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 3 1456 194 311 29 55 chr6 114218607 114218787 -35298250 - L2c LINE L2 -225 3150 2977 3 1456 228 317 11 19 chr6 114219297 114219434 -35297603 - MIRb SINE MIR -87 189 52 3 1456 243 0 0 0 chr6 114220145 114220172 -35296865 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1456 298 351 104 9 chr6 114220176 114220406 -35296631 - MLT1I LTR MaLR -16 395 144 3 1456 870 162 0 0 chr6 114221497 114221657 -35295380 + (CA)n Simple_repeat Simple_repeat 2 161 0 3 1456 265 289 167 53 chr6 114222691 114222841 -35294196 + MTEa LTR MaLR 51 217 -162 3 1456 1060 244 89 35 chr6 114222906 114223254 -35293783 - MTEb LTR MaLR 0 379 13 3 1456 439 281 191 28 chr6 114223433 114223678 -35293359 + B4 SINE B4 1 285 -7 3 1456 228 337 0 30 chr6 114223762 114223863 -35293174 + G-rich Low_complexity Low_complexity 1 98 0 3 1456 242 311 0 0 chr6 114224712 114224773 -35292264 + CT-rich Low_complexity Low_complexity 4 64 0 3 1456 665 226 6 0 chr6 114224773 114224950 -35292087 + C-rich Low_complexity Low_complexity 3 180 0 3 1456 590 247 6 0 chr6 114224926 114225104 -35291933 + CT-rich Low_complexity Low_complexity 1 179 0 3 1456 397 244 22 11 chr6 114225515 114225606 -35291431 - B4A SINE B4 -199 93 2 3 1456 873 233 274 9 chr6 114225620 114225945 -35291092 + RCHARR1 DNA MER1_type 493 903 -71 3 1456 572 258 311 0 chr6 114226087 114226370 -35290667 + MTEa LTR MaLR 1 371 -8 3 1456 298 296 12 0 chr6 114227710 114227791 -35289246 - MIR SINE MIR -93 169 88 3 1456 331 210 39 2 chr6 114228514 114228603 -35288434 - MIR SINE MIR -61 147 63 3 1456 345 360 0 9 chr6 114228698 114228813 -35288224 + MIRb SINE MIR 26 139 -129 3 1456 265 309 55 37 chr6 114228844 114229015 -35288022 + MIRb SINE MIR 26 207 -1 3 1456 224 259 0 17 chr6 114229064 114229123 -35287914 - MIRb SINE MIR 0 268 211 3 1456 302 173 0 0 chr6 114229396 114229448 -35287589 + L2a LINE L2 3375 3426 0 3 1456 545 318 74 37 chr6 114229483 114229780 -35287257 - MER113 DNA MER1_type -11 510 203 3 1456 414 0 0 0 chr6 114229972 114230018 -35287019 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1456 1626 175 68 21 chr6 114230234 114230572 -35286465 + ORR1B1 LTR MaLR 41 394 0 3 1456 904 234 75 0 chr6 114230627 114230828 -35286209 + B3 SINE B2 1 216 0 3 1456 300 238 126 39 chr6 114230845 114230972 -35286065 - MLT1K LTR MaLR -85 510 373 4 1456 896 56 8 16 chr6 114231275 114231403 -35285634 - B1_Mus1 SINE Alu 0 148 22 4 1456 234 0 0 0 chr6 114232150 114232176 -35284861 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1456 452 256 16 55 chr6 114232406 114232588 -35284449 + GA-rich Low_complexity Low_complexity 4 178 0 4 1456 303 345 0 0 chr6 114234760 114234870 -35282167 - MIR SINE MIR -89 173 64 4 1456 187 233 0 23 chr6 114237191 114237235 -35279802 - MIRc SINE MIR -7 261 219 4 1456 634 227 17 0 chr6 114238512 114238684 -35278353 + GA-rich Low_complexity Low_complexity 2 176 0 4 1456 219 170 42 71 chr6 114239869 114239956 -35277081 + MIR SINE MIR 116 205 -71 4 1456 210 224 296 9 chr6 114240175 114240283 -35276754 - MIRc SINE MIR -119 149 11 4 1456 304 285 134 3 chr6 114240851 114240988 -35276049 + MIRb SINE MIR 3 154 -122 4 1456 581 184 9 0 chr6 114241901 114242010 -35275027 - URR1B DNA MER1_type -77 148 39 4 1456 1038 153 158 31 chr6 114242737 114242933 -35274104 + URR1B DNA MER1_type 5 225 0 4 1456 250 333 16 16 chr6 114244144 114244269 -35272768 + CT-rich Low_complexity Low_complexity 1 125 0 4 1456 205 228 70 0 chr6 114244881 114244938 -35272099 + MIRm SINE MIR 94 154 -122 4 1456 212 336 41 16 chr6 114245383 114245504 -35271533 - MIR SINE MIR -126 136 13 4 1456 390 276 21 56 chr6 114245742 114245884 -35271153 + MIR SINE MIR 8 144 -118 4 1456 219 342 0 14 chr6 114246194 114246268 -35270769 + MIRc SINE MIR 85 157 -111 4 1456 471 35 0 0 chr6 114246327 114246384 -35270653 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1456 207 179 0 43 chr6 114247577 114247647 -35269390 + GA-rich Low_complexity Low_complexity 4 70 0 4 1456 21 0 0 0 chr6 114248077 114248098 -35268939 + AT_rich Low_complexity Low_complexity 1 21 0 4 1456 282 322 62 22 chr6 114248109 114248287 -35268750 + L2b LINE L2 2918 3102 -273 4 1456 767 275 60 8 chr6 114251209 114251458 -35265579 + B4A SINE B4 9 270 -22 4 1456 878 257 25 10 chr6 114251496 114251700 -35265337 + B4 SINE B4 86 292 0 4 1456 302 308 28 28 chr6 114253028 114253135 -35263902 + MIRb SINE MIR 40 146 -122 4 1456 209 264 56 0 chr6 114254137 114254209 -35262828 - L2a LINE L2 -3 3423 3348 4 1456 205 381 25 0 chr6 114255241 114255350 -35261687 + MIR SINE MIR 40 148 -120 4 1456 351 250 43 26 chr6 114255709 114255824 -35261213 + MIRb SINE MIR 26 142 -126 4 1456 390 302 5 137 chr6 114256041 114256252 -35260785 - MIRm SINE MIR -4 272 90 4 1456 261 0 0 0 chr6 114256268 114256297 -35260740 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1456 249 108 0 0 chr6 114256822 114256859 -35260178 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1456 476 241 93 0 chr6 114257141 114257249 -35259788 + PB1D9 SINE Alu 2 119 -1 4 1456 316 219 121 12 chr6 114257279 114257362 -35259675 + B1F1 SINE Alu 15 106 -43 4 1456 210 240 164 39 chr6 114257362 114257383 -35259654 + ID_B1 SINE B4 96 212 -12 4 1456 218 153 37 105 chr6 114259586 114259776 -35257261 + (CTGTG)n Simple_repeat Simple_repeat 3 179 0 4 1456 325 271 0 23 chr6 114259723 114259897 -35257140 + (TGGG)n Simple_repeat Simple_repeat 3 172 0 4 1456 255 140 73 79 chr6 114259841 114260019 -35257018 + (CTGTG)n Simple_repeat Simple_repeat 3 179 0 4 1456 334 352 71 17 chr6 114261205 114261445 -35255592 - L2b LINE L2 -188 3187 2935 4 1456 909 223 69 0 chr6 114262088 114262290 -35254747 + B3 SINE B2 1 216 0 4 1456 307 203 14 14 chr6 114262413 114262483 -35254554 + RSINE1 SINE B4 65 134 -31 4 1456 234 0 0 0 chr6 114262485 114262511 -35254526 + (CAGA)n Simple_repeat Simple_repeat 4 29 0 4 1456 1107 65 0 0 chr6 114263105 114263243 -35253794 + B1_Mus1 SINE Alu 1 138 -10 4 1456 432 0 0 0 chr6 114263243 114263291 -35253746 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 4 1456 373 289 128 59 chr6 114264796 114265171 -35251866 - L2 LINE L2 -340 3079 2679 4 1456 1394 238 58 33 chr6 114267524 114267885 -35249152 - ORR1D2 LTR MaLR 0 370 1 4 1456 232 306 112 8 chr6 114268322 114268447 -35248590 - MLT2E LTR ERVL -2 626 489 4 1456 444 329 81 4 chr6 114268459 114268694 -35248343 + MER45B DNA Tip100 202 454 -586 4 1456 237 293 72 16 chr6 114268853 114268978 -35248059 + L2a LINE L2 3037 3168 -258 4 1456 585 0 0 0 chr6 114268990 114269055 -35247982 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1456 460 240 31 0 chr6 114269076 114269172 -35247865 - PB1D10 SINE Alu -6 111 13 4 1456 357 302 31 10 chr6 114269092 114269189 -35247848 - ID_B1 SINE B4 -48 176 78 4 1456 527 182 10 10 chr6 114269293 114269393 -35247644 - RSINE1 SINE B4 -55 110 11 4 1456 269 321 49 63 chr6 114269450 114269593 -35247444 + L2a LINE L2 3286 3426 0 4 1456 294 239 47 35 chr6 114269615 114269640 -35247397 + (TGGA)n Simple_repeat Simple_repeat 3 27 0 4 1456 525 58 0 0 chr6 114269640 114269709 -35247328 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 4 1456 294 239 47 35 chr6 114269709 114269852 -35247185 + (TGGA)n Simple_repeat Simple_repeat 4 148 0 4 1456 2356 87 55 0 chr6 114269966 114270276 -35246761 - ORR1A2 LTR MaLR 0 327 1 4 1456 247 214 24 0 chr6 114270437 114270521 -35246516 + A-rich Low_complexity Low_complexity 3 88 0 4 1456 587 317 89 31 chr6 114270620 114270877 -35246160 - Charlie19a DNA Charlie -106 280 9 4 1456 935 220 40 10 chr6 114271257 114271459 -35245578 - B3 SINE B2 -1 215 8 4 1456 659 174 8 8 chr6 114271472 114271594 -35245443 - ORR1D1 LTR MaLR -228 146 25 4 1456 203 22 0 115 chr6 114272100 114272152 -35244885 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 4 1456 592 268 14 0 chr6 114273535 114273673 -35243364 + RSINE1 SINE B4 2 141 -24 4 1456 330 26 0 0 chr6 114273676 114273715 -35243322 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1456 522 0 0 0 chr6 114273715 114273772 -35243265 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 1456 3847 47 20 33 chr6 114273798 114274286 -35242751 - LTRIS_Mm LTR ERV1 0 482 1 4 1456 1191 275 72 39 chr6 114274415 114274775 -35242262 + MTEa LTR MaLR 6 377 -2 4 1456 2333 295 72 138 chr6 114274777 114275343 -35241694 + MTEa-int LTR MaLR 1 578 -1002 4 1456 558 0 0 0 chr6 114275343 114275405 -35241632 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 1456 2333 295 72 138 chr6 114275405 114276527 -35240510 + MTEa-int LTR MaLR 579 1577 -3 4 1456 759 249 22 17 chr6 114276530 114276710 -35240327 + MTEa LTR MaLR 3 183 -196 4 1456 432 97 0 0 chr6 114276714 114276776 -35240261 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 4 1456 351 327 43 49 chr6 114276776 114276940 -35240097 + MTEa LTR MaLR 168 330 -49 4 1456 491 302 58 14 chr6 114276949 114277157 -35239880 + L1MC4 LINE L1 7680 7896 -146 4 1456 270 233 0 189 chr6 114277341 114277392 -35239645 + L3 LINE CR1 4289 4328 -161 4 1456 351 0 0 0 chr6 114277392 114277431 -35239606 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1456 270 233 0 189 chr6 114277431 114277490 -35239547 + L3 LINE CR1 4329 4378 -111 4 1456 1411 132 9 14 chr6 114278067 114278289 -35238748 + URR1B DNA MER1_type 5 225 0 4 1456 1389 323 99 44 chr6 114278693 114279348 -35237689 + MER44D DNA MER2_type 8 698 -7 4 1456 24 53 0 0 chr6 114279422 114279460 -35237577 + AT_rich Low_complexity Low_complexity 1 38 0 4 1456 543 319 76 30 chr6 114280403 114280639 -35236398 + MLT1L LTR MaLR 26 272 -338 4 1456 716 201 22 7 chr6 114280645 114280780 -35236257 - B1_Mur4 SINE Alu 0 150 14 4 1456 459 301 20 20 chr6 114280652 114280798 -35236239 - ID_B1 SINE B4 -6 218 73 4 1456 268 251 122 81 chr6 114283068 114283289 -35233748 - RMER12 LTR ERVK -365 957 728 4 1456 329 316 27 68 chr6 114284370 114284516 -35232521 + Tigger5 DNA MER2_type 59 198 -2208 4 1456 1674 200 78 18 chr6 114284808 114285205 -35231832 - MTC LTR MaLR 0 421 1 4 1456 755 221 21 0 chr6 114285209 114285354 -35231683 + B1_Mus1 SINE Alu 1 148 0 4 1456 286 309 57 57 chr6 114285839 114285997 -35231040 + ORR1E LTR MaLR 14 171 -188 4 1456 369 0 0 0 chr6 114287184 114287225 -35229812 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1456 219 394 33 33 chr6 114287292 114287502 -35229535 + MIR SINE MIR 28 237 -25 4 1456 481 171 17 0 chr6 114288057 114288174 -35228863 + CT-rich Low_complexity Low_complexity 2 120 0 4 1456 238 228 58 92 chr6 114288206 114288293 -35228744 + MLT1A1 LTR MaLR 318 401 -7 4 1456 421 233 10 42 chr6 114288493 114288609 -35228428 - MIRc SINE MIR -152 124 15 4 1456 302 137 39 0 chr6 114289332 114289383 -35227654 - HAL1-3A_ME LINE L1 -829 2029 1977 4 1456 805 273 100 18 chr6 114289433 114289653 -35227384 - B4A SINE B4 -7 285 48 4 1456 462 79 0 0 chr6 114289956 114290019 -35227018 + (TGGA)n Simple_repeat Simple_repeat 1 63 0 4 1456 1222 244 96 42 chr6 114290019 114290353 -35226684 - MTD LTR MaLR 0 419 68 4 1456 216 218 23 11 chr6 114290372 114290460 -35226577 + (TGGG)n Simple_repeat Simple_repeat 2 90 0 4 1456 212 290 29 0 chr6 114290481 114290550 -35226487 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 4 1456 216 0 0 0 chr6 114290689 114290713 -35226324 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1456 1307 74 8 2 chr6 114290908 114291701 -35225336 + (CACAG)n Simple_repeat Simple_repeat 1 796 0 4 1456 1401 74 0 2 chr6 114291724 114292541 -35224496 + (CACAG)n Simple_repeat Simple_repeat 1 815 0 4 1456 1170 74 0 0 chr6 114292557 114292732 -35224305 + (CACAG)n Simple_repeat Simple_repeat 4 178 0 4 1456 383 179 13 0 chr6 114292777 114292855 -35224182 - L1MB7 LINE L1 -225 5959 5881 4 1456 1404 208 144 24 chr6 114292855 114293199 -35223838 - MTD LTR MaLR 0 419 22 4 1456 450 0 0 0 chr6 114293199 114293249 -35223788 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1456 1404 208 144 24 chr6 114293249 114293278 -35223759 - MTD LTR MaLR -398 21 1 4 1456 259 303 129 29 chr6 114293589 114293759 -35223278 - MIRb SINE MIR -56 212 26 4 1456 360 0 0 0 chr6 114294250 114294290 -35222747 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1456 1422 225 65 34 chr6 114294374 114294728 -35222309 - MTE2b LTR MaLR -14 365 1 4 1457 270 204 162 61 chr6 114297176 114297275 -35219762 - ID_B1 SINE B4 -5 219 111 4 1457 969 169 0 0 chr6 114297510 114297747 -35219290 + CT-rich Low_complexity Low_complexity 1 237 0 5 1457 237 306 44 40 chr6 114299010 114299123 -35217914 + MLT1H LTR MaLR 58 160 -389 5 1457 1085 246 10 63 chr6 114299123 114299426 -35217611 + B4 SINE B4 2 288 -4 5 1457 226 310 0 45 chr6 114299426 114299461 -35217576 + MLT1H LTR MaLR 137 168 -321 5 1457 213 39 0 0 chr6 114299523 114299549 -35217488 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1457 1886 199 31 3 chr6 114299952 114300305 -35216732 - MTD LTR MaLR -50 369 7 5 1457 409 365 62 12 chr6 114300659 114300903 -35216134 + Arthur1B DNA Tip100 262 517 -708 5 1457 344 290 171 43 chr6 114300915 114301222 -35215815 + Arthur1B DNA Tip100 567 912 -313 5 1457 880 255 108 9 chr6 114301287 114301509 -35215528 + B4A SINE B4 41 284 -8 5 1457 1196 62 14 0 chr6 114301673 114301818 -35215219 + B1_Mus1 SINE Alu 2 148 0 5 1457 197 31 94 0 chr6 114301818 114301850 -35215187 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 5 1457 927 126 0 0 chr6 114302029 114302319 -35214718 + (GA)n Simple_repeat Simple_repeat 1 290 0 5 1457 558 319 82 60 chr6 114302741 114303058 -35213979 - MLT1A LTR MaLR -2 372 49 5 1457 607 253 62 0 chr6 114305076 114305238 -35211799 + MER2 DNA MER2_type 130 301 -44 5 1457 867 301 88 47 chr6 114305700 114306062 -35210975 + LTR82A LTR ERVL 133 509 -363 5 1457 437 335 56 34 chr6 114306201 114306470 -35210567 - ORR1D2 LTR MaLR -4 366 92 5 1457 421 280 86 59 chr6 114306560 114306712 -35210325 - B4A SINE B4 0 292 137 5 1457 288 0 0 0 chr6 114306853 114306885 -35210152 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1457 740 276 158 15 chr6 114307112 114307440 -35209597 - MTEa LTR MaLR 0 379 5 5 1457 630 0 0 0 chr6 114307462 114307532 -35209505 + (TGG)n Simple_repeat Simple_repeat 1 70 0 5 1457 432 0 0 0 chr6 114307555 114307603 -35209434 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1457 636 222 0 56 chr6 114307614 114307757 -35209280 - B1_Mur1 SINE Alu -5 144 10 5 1457 351 302 0 109 chr6 114307617 114307773 -35209264 - B4 SINE B4 -74 218 80 5 1457 228 336 219 0 chr6 114307807 114307944 -35209093 + L2b LINE L2 3207 3373 -2 5 1457 371 281 103 26 chr6 114308369 114308525 -35208512 - MIRb SINE MIR -83 185 10 5 1457 296 336 60 27 chr6 114308772 114308922 -35208115 - MIRc SINE MIR -108 160 6 5 1457 233 266 68 37 chr6 114309186 114309325 -35207712 - MIRc SINE MIR -66 202 50 5 1457 1042 203 191 25 chr6 114309426 114309738 -35207299 + ORR1E LTR MaLR 2 420 -1 5 1457 1514 187 163 45 chr6 114310896 114311271 -35205766 + MTD LTR MaLR 1 419 0 5 1457 878 193 11 0 chr6 114311714 114311979 -35205058 + (CAGGA)n Simple_repeat Simple_repeat 1 268 0 5 1457 605 228 72 123 chr6 114311998 114312148 -35204889 + B3A SINE B2 1 151 -47 5 1457 513 0 0 0 chr6 114312148 114312205 -35204832 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1457 366 42 0 0 chr6 114312205 114312252 -35204785 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1457 471 228 72 123 chr6 114312252 114312295 -35204742 + B2_Mm2 SINE B2 136 184 -11 5 1457 1115 122 0 0 chr6 114312304 114312452 -35204585 + B1_Mur4 SINE Alu 1 148 -2 5 1457 346 248 106 94 chr6 114312520 114312680 -35204357 + MIR3 SINE MIR 42 203 -5 5 1457 739 277 13 0 chr6 114312711 114312866 -35204171 - RSINE1 SINE B4 -6 159 3 5 1457 239 274 111 88 chr6 114313014 114313230 -35203807 + L1ME3 LINE L1 5866 6086 -76 5 1457 359 267 27 0 chr6 114313250 114313325 -35203712 + B3 SINE B2 1 77 -139 5 1457 31 44 0 0 chr6 114313358 114313403 -35203634 + AT_rich Low_complexity Low_complexity 1 45 0 5 1457 1004 83 12 6 chr6 114313403 114313573 -35203464 - Lx3_Mus LINE L1 0 7009 6839 5 1457 326 125 0 0 chr6 114313575 114313639 -35203398 - L1Md_F2 LINE L1 0 6582 6519 5 1457 305 260 29 20 chr6 114314685 114314787 -35202250 - MIRb SINE MIR -121 147 45 5 1457 955 201 217 0 chr6 114314787 114315036 -35202001 - MTD LTR MaLR -2 417 115 5 1457 725 228 140 16 chr6 114315038 114315242 -35201795 + B3 SINE B2 7 215 -1 5 1457 302 154 5 17 chr6 114315296 114315356 -35201681 - MTD LTR MaLR -317 62 1 5 1457 341 309 154 49 chr6 114315927 114316213 -35200824 + LTR16A1 LTR ERVL 51 366 -90 5 1457 182 91 0 83 chr6 114316238 114316274 -35200763 - MIR SINE MIR -56 152 120 5 1457 959 232 14 42 chr6 114316608 114316824 -35200213 - B3 SINE B2 -6 210 1 5 1457 222 202 70 81 chr6 114316852 114316938 -35200099 + L2 LINE L2 2823 2907 -512 5 1457 308 301 112 8 chr6 114316993 114317127 -35199910 - L1ME2 LINE L1 -109 6055 5908 5 1457 289 217 36 47 chr6 114317149 114317243 -35199794 - L1ME2 LINE L1 -367 5817 5724 5 1457 705 24 0 0 chr6 114317283 114317366 -35199671 + (TTCC)n Simple_repeat Simple_repeat 4 86 0 5 1457 610 246 63 0 chr6 114317549 114317691 -35199346 + B3A SINE B2 1 151 -47 5 1457 414 0 0 0 chr6 114317695 114317741 -35199296 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1457 394 125 12 12 chr6 114318106 114318187 -35198850 - L1ME2 LINE L1 -976 5170 5090 5 1457 581 288 98 55 chr6 114318272 114318713 -35198324 - L1ME2 LINE L1 -1217 4923 4436 5 1457 360 0 0 0 chr6 114318773 114318813 -35198224 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1457 534 259 0 0 chr6 114318813 114318915 -35198122 - RSINE1 SINE B4 -40 125 24 5 1457 433 307 126 60 chr6 114318930 114319311 -35197726 + RMER10A LTR ERVL 12 417 -25 5 1457 515 322 33 5 chr6 114319414 114319626 -35197411 - L1ME2 LINE L1 -1779 4367 4150 5 1457 416 307 80 51 chr6 114319830 114320166 -35196871 - L1MC5 LINE L1 -138 7823 7478 5 1457 1170 35 0 0 chr6 114320188 114320330 -35196707 - L1_Mus1 LINE L1 0 6567 6426 5 1457 22 70 0 0 chr6 114320375 114320418 -35196619 + AT_rich Low_complexity Low_complexity 1 43 0 5 1457 225 196 0 0 chr6 114320418 114320464 -35196573 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1457 563 315 6 30 chr6 114320468 114320635 -35196402 - RSINE1 SINE B4 0 165 3 5 1457 1056 207 20 0 chr6 114320657 114320860 -35196177 - B3 SINE B2 0 216 10 5 1457 819 119 0 0 chr6 114320875 114321001 -35196036 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 5 1457 2551 51 16 0 chr6 114321039 114321351 -35195686 - L1_Mus1 LINE L1 0 6567 6251 5 1457 455 66 0 200 chr6 114321351 114321446 -35195591 + L1_Mus1 LINE L1 6174 6249 -317 5 1457 358 298 0 24 chr6 114321450 114321577 -35195460 - L1MC5 LINE L1 -492 7469 7346 5 1457 750 208 0 0 chr6 114321631 114321859 -35195178 + (TG)n Simple_repeat Simple_repeat 1 228 0 5 1457 279 348 0 11 chr6 114321957 114322047 -35194990 - B4A SINE B4 -121 171 83 5 1457 327 274 71 16 chr6 114322409 114322535 -35194502 - MLT1A1 LTR MaLR -1 407 275 5 1457 2030 102 108 0 chr6 114323579 114323874 -35193163 - ORR1A4 LTR MaLR -2 327 1 5 1457 1669 181 135 139 chr6 114324355 114324663 -35192374 - MTC LTR MaLR 0 421 61 5 1457 615 27 0 0 chr6 114324663 114324736 -35192301 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 5 1457 1669 181 135 139 chr6 114324736 114324791 -35192246 - MTC LTR MaLR -361 60 60 5 1457 1280 20 0 33 chr6 114324791 114324943 -35192094 - B1_Mus1 SINE Alu 0 148 2 5 1457 1669 181 135 139 chr6 114324943 114325001 -35192036 - MTC LTR MaLR -361 60 1 5 1457 663 13 0 0 chr6 114325393 114325469 -35191568 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 1457 990 258 205 28 chr6 114326023 114326458 -35190579 + Lx9 LINE L1 6959 7470 -174 5 1457 2434 164 143 53 chr6 114326471 114327284 -35189753 + RMER6C LTR ERVK 1 720 0 5 1457 332 276 54 81 chr6 114327375 114327560 -35189477 + MER2 DNA MER2_type 157 336 -9 5 1457 199 330 64 0 chr6 114327578 114327687 -35189350 - L2c LINE L2 -252 3135 3020 5 1457 262 240 3 19 chr6 114327995 114328074 -35188963 + MTEa LTR MaLR 269 357 -22 5 1457 655 238 142 5 chr6 114328144 114328334 -35188703 - B3 SINE B2 0 216 1 5 1457 292 222 12 12 chr6 114328754 114328836 -35188201 + L1MD2 LINE L1 6078 6159 -200 5 1457 314 167 32 32 chr6 114329013 114329075 -35187962 + MT2B LTR ERVL 1 62 -471 5 1457 200 122 24 0 chr6 114329081 114329122 -35187915 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 5 1457 1424 204 84 117 chr6 114329122 114329557 -35187480 + MT2B LTR ERVL 56 601 0 5 1457 295 364 68 53 chr6 114329855 114330119 -35186918 + ORR1E LTR MaLR 86 353 -6 5 1457 515 269 89 16 chr6 114330121 114330319 -35186718 + L1MB3 LINE L1 5662 5863 -317 5 1457 1970 186 21 24 chr6 114330338 114330712 -35186325 - RLTR20B3 LTR ERVK -204 373 1 5 1457 466 256 187 0 chr6 114330712 114330915 -35186122 + L1MB3 LINE L1 5935 6175 -8 5 1457 331 279 107 0 chr6 114331233 114331355 -35185682 + L2c LINE L2 3089 3223 -164 5 1457 229 267 17 0 chr6 114332422 114332482 -35184555 + Tigger16a DNA Tigger 612 672 -261 5 1457 190 329 28 14 chr6 114332511 114332582 -35184455 - MER5B DNA MER1_type -18 160 89 5 1457 240 321 0 0 chr6 114332601 114332657 -35184380 - MTD-int LTR MaLR -1314 56 1 5 1457 1646 182 124 34 chr6 114332657 114333037 -35184000 - MTD LTR MaLR 0 419 6 5 1457 350 57 19 0 chr6 114333047 114333100 -35183937 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 5 1457 462 238 46 8 chr6 114333530 114333661 -35183376 + MTD LTR MaLR 284 419 0 5 1457 390 325 165 16 chr6 114333735 114334104 -35182933 - L2 LINE L2 -1156 2263 1840 5 1457 237 304 40 80 chr6 114334534 114334684 -35182353 - L2 LINE L2 -1557 1862 1719 5 1457 244 318 92 7 chr6 114334707 114334859 -35182178 - L2 LINE L2 -1668 1751 1587 5 1457 376 281 91 36 chr6 114334878 114335024 -35182013 - MLT1A1 LTR MaLR 0 408 219 5 1457 252 0 0 0 chr6 114336147 114336175 -35180862 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1457 562 235 14 42 chr6 114336177 114336319 -35180718 - ID_B1 SINE B4 0 224 87 5 1457 357 308 56 25 chr6 114336656 114336816 -35180221 + L1M4 LINE L1 5566 5730 -448 5 1457 2331 134 11 74 chr6 114337711 114338171 -35178866 - BGLII_B LTR ERVK -1 440 10 5 1457 902 93 146 7 chr6 114338207 114338358 -35178679 + B2_Mm2 SINE B2 10 181 -14 5 1457 1946 188 112 66 chr6 114338541 114339042 -35177995 - RMER15 LTR ERVL -5 570 47 5 1457 229 295 0 0 chr6 114339065 114339143 -35177894 - URR1B DNA MER1_type 0 225 148 5 1457 263 224 44 15 chr6 114339121 114339189 -35177848 - RMER15 LTR ERVL -503 72 3 5 1457 257 323 122 73 chr6 114339720 114339967 -35177070 - MLT1F LTR MaLR -64 484 226 5 1457 1100 61 0 39 chr6 114340658 114340811 -35176226 + B1_Mm SINE Alu 1 147 0 5 1457 714 346 89 14 chr6 114341907 114342335 -35174702 - MLT1K LTR MaLR 0 595 136 5 1457 964 145 11 6 chr6 114343663 114343843 -35173194 - RLTR28 LTR ERVL 0 524 344 6 1457 1560 187 42 172 chr6 114343812 114344354 -35172683 - RLTR28 LTR ERVL -52 472 1 6 1457 207 171 0 0 chr6 114344354 114344389 -35172648 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 6 1457 602 292 32 50 chr6 114344661 114344881 -35172156 - ORR1E LTR MaLR -143 216 1 6 1457 196 251 87 57 chr6 114345382 114345484 -35171553 + MIR3 SINE MIR 61 160 -48 6 1457 1132 68 11 0 chr6 114345577 114345753 -35171284 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 1457 243 330 95 19 chr6 114345838 114345943 -35171094 + MLT1K LTR MaLR 76 188 -407 6 1457 384 40 0 0 chr6 114347263 114347313 -35169724 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1457 189 107 0 0 chr6 114347437 114347465 -35169572 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 6 1457 307 38 38 19 chr6 114347570 114347623 -35169414 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1457 221 186 27 41 chr6 114347895 114347968 -35169069 + (CCG)n Simple_repeat Simple_repeat 2 73 0 6 1457 362 261 35 26 chr6 114348356 114348470 -35168567 - MIRb SINE MIR -45 223 109 6 1457 218 295 179 7 chr6 114349117 114349257 -35167780 - MIR SINE MIR -61 201 38 6 1457 345 244 12 24 chr6 114350088 114350172 -35166865 - ID4 SINE ID 0 83 1 6 1457 231 244 56 34 chr6 114350801 114350890 -35166147 + MIRb SINE MIR 121 211 -57 6 1457 272 277 0 46 chr6 114351620 114351707 -35165330 + MIRb SINE MIR 120 202 -66 6 1457 191 254 141 0 chr6 114351894 114351965 -35165072 - MIRb SINE MIR -81 187 107 6 1457 253 145 28 28 chr6 114352496 114352567 -35164470 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 6 1457 757 172 7 7 chr6 114352618 114352753 -35164284 - B1_Mus1 SINE Alu -13 135 1 6 1457 307 297 8 92 chr6 114352753 114352780 -35164257 - MT2B LTR ERVL -447 154 139 6 1457 416 333 55 39 chr6 114352780 114353036 -35164001 - L1M5 LINE L1 -1713 4433 4174 6 1457 334 297 50 84 chr6 114353132 114353334 -35163703 - L1MD LINE L1 -2106 4040 3846 6 1457 187 322 133 0 chr6 114354084 114354174 -35162863 - MIRb SINE MIR -36 232 131 6 1457 202 211 0 0 chr6 114354262 114354300 -35162737 + CT-rich Low_complexity Low_complexity 4 41 0 6 1457 276 53 0 0 chr6 114354531 114354569 -35162468 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1457 458 279 43 22 chr6 114355764 114355903 -35161134 + ID_B1 SINE B4 79 220 -4 6 1457 275 264 32 6 chr6 114355903 114356059 -35160978 + (CA)n Simple_repeat Simple_repeat 1 160 0 6 1457 327 146 0 0 chr6 114356206 114356261 -35160776 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1457 917 228 35 0 chr6 114356261 114356463 -35160574 + B3 SINE B2 2 210 -6 6 1457 575 277 111 26 chr6 114356726 114356915 -35160122 - B3 SINE B2 -11 205 1 6 1457 192 77 0 0 chr6 114356926 114356952 -35160085 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 1457 393 191 10 73 chr6 114356957 114357053 -35159984 - PB1D7 SINE Alu -13 107 18 6 1457 519 234 189 6 chr6 114357658 114357817 -35159220 - B3 SINE B2 -28 188 1 6 1457 334 247 13 0 chr6 114357851 114357928 -35159109 + MIR SINE MIR 104 181 -81 6 1457 193 132 132 0 chr6 114358069 114358107 -35158930 + L2c LINE L2 3325 3367 -20 6 1457 1802 174 108 8 chr6 114359650 114360020 -35157017 + MTD LTR MaLR 13 419 0 6 1457 309 367 54 50 chr6 114360259 114360537 -35156500 + L2b LINE L2 3097 3375 0 6 1457 335 281 41 0 chr6 114361402 114361515 -35155522 - MIRc SINE MIR -143 133 13 6 1457 474 18 0 0 chr6 114361607 114361662 -35155375 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1457 198 91 0 0 chr6 114361949 114361982 -35155055 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6 1457 248 274 73 10 chr6 114362587 114362683 -35154354 + MTEa LTR MaLR 278 379 0 6 1457 209 273 64 13 chr6 114362690 114362768 -35154269 - MIR SINE MIR -161 107 26 6 1457 303 258 20 49 chr6 114363025 114363127 -35153910 + PB1D10 SINE Alu 13 111 -6 6 1457 849 92 0 0 chr6 114363817 114363937 -35153100 + (TTCTC)n Simple_repeat Simple_repeat 5 124 0 6 1457 218 346 153 25 chr6 114363988 114364394 -35152643 - L2 LINE L2 -338 3081 2624 6 1457 189 167 0 0 chr6 114365194 114365230 -35151807 + MIRm SINE MIR 115 150 -126 6 1457 180 77 0 0 chr6 114365273 114365299 -35151738 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1457 333 102 0 0 chr6 114365367 114365426 -35151611 + (CAGG)n Simple_repeat Simple_repeat 2 60 0 6 1457 370 300 10 10 chr6 114365436 114365537 -35151500 - MTEb LTR MaLR -63 316 216 6 1457 1395 214 108 19 chr6 114365713 114366084 -35150953 + MTD LTR MaLR 5 408 -11 6 1457 539 280 14 0 chr6 114366101 114366244 -35150793 - RSINE1 SINE B4 -17 148 4 6 1457 556 255 266 20 chr6 114366246 114366490 -35150547 + MTE2b LTR MaLR 76 379 0 6 1457 331 198 99 148 chr6 114366490 114366630 -35150407 - MTEb LTR MaLR -160 219 87 6 1457 227 344 47 60 chr6 114366788 114367023 -35150014 + ORR1E LTR MaLR 1 232 -127 6 1457 248 315 88 51 chr6 114367302 114367439 -35149598 + MIR SINE MIR 17 158 -104 6 1457 298 257 0 75 chr6 114367591 114367671 -35149366 - MER103 DNA DNA -80 86 13 6 1457 307 257 80 13 chr6 114370044 114370119 -35146918 + B1F SINE Alu 1 80 -69 6 1457 425 357 3 70 chr6 114370446 114370777 -35146260 - L1MB8 LINE L1 -9 6169 5861 6 1457 523 327 38 38 chr6 114370919 114371129 -35145908 - Lx8 LINE L1 -154 7319 7110 6 1457 248 147 520 0 chr6 114371161 114371236 -35145801 + URR1A DNA MER1_type 1 114 -112 6 1457 537 236 57 57 chr6 114372271 114372446 -35144591 - MIR SINE MIR -26 242 68 6 1457 193 263 0 0 chr6 114372982 114373041 -35143996 + L2c LINE L2 3106 3167 -220 6 1457 22 0 0 0 chr6 114374954 114374976 -35142061 + AT_rich Low_complexity Low_complexity 1 22 0 6 1457 300 365 77 35 chr6 114375066 114375327 -35141710 + L1M5 LINE L1 5255 5526 -598 6 1457 219 169 14 27 chr6 114375521 114375594 -35141443 + GA-rich Low_complexity Low_complexity 2 73 0 6 1457 3063 58 2 5 chr6 114375642 114376043 -35140994 - MTB LTR MaLR 0 400 1 6 1457 324 238 0 0 chr6 114376938 114377001 -35140036 + PB1D10 SINE Alu 29 91 -26 6 1457 357 159 0 0 chr6 114377005 114377068 -35139969 + (TAA)n Simple_repeat Simple_repeat 2 64 0 6 1457 801 178 0 0 chr6 114379958 114380093 -35136944 - B1_Mur3 SINE Alu -13 136 2 6 1457 900 262 139 38 chr6 114380218 114380429 -35136608 - MLT1A0 LTR MaLR -2 363 139 6 1457 877 229 52 181 chr6 114380429 114380850 -35136187 - ORR1D2 LTR MaLR -3 367 1 6 1457 900 262 139 38 chr6 114380850 114380955 -35136082 - MLT1A0 LTR MaLR -227 138 15 6 1457 2304 151 106 14 chr6 114380960 114381042 -35135995 + RLTR11A2 LTR ERVK 1 82 -445 6 1457 477 0 0 0 chr6 114381042 114381095 -35135942 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1457 2304 151 106 14 chr6 114381095 114381495 -35135542 + RLTR11A2 LTR ERVK 83 526 -1 6 1457 187 310 91 11 chr6 114381867 114381955 -35135082 + MIRb SINE MIR 47 141 -127 6 1457 234 0 0 0 chr6 114381987 114382013 -35135024 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 6 1457 342 330 89 53 chr6 114382026 114382308 -35134729 - B4A SINE B4 0 292 1 6 1457 264 77 0 0 chr6 114382539 114382578 -35134459 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1457 316 303 67 33 chr6 114383121 114383271 -35133766 - RSINE1 SINE B4 0 165 11 6 1457 382 290 10 0 chr6 114384574 114384674 -35132363 + B1_Mur3 SINE Alu 1 101 -48 6 1457 251 312 0 0 chr6 114385521 114385598 -35131439 - ID4 SINE ID -6 77 1 6 1457 390 307 92 38 chr6 114386406 114386646 -35130391 - Kanga2_a DNA Tc2 -478 410 158 6 1457 268 269 26 0 chr6 114386647 114386725 -35130312 - ID4 SINE ID 0 83 4 6 1457 285 324 42 76 chr6 114386791 114387028 -35130009 - MLT1E1A LTR MaLR -78 602 374 6 1457 451 325 33 122 chr6 114388797 114389189 -35127848 - ORR1E LTR MaLR -2 357 1 6 1457 408 273 104 47 chr6 114389189 114389301 -35127736 - ORR1E-int LTR MaLR -53 1527 1415 6 1457 855 223 49 5 chr6 114389301 114389504 -35127533 + B3 SINE B2 5 216 0 6 1457 269 267 118 55 chr6 114389504 114389518 -35127519 - ORR1E-int LTR MaLR -125 1245 1236 6 1457 602 256 94 47 chr6 114389562 114389796 -35127241 - ORR1E-int LTR MaLR -1335 245 1 6 1457 359 260 19 37 chr6 114389807 114389915 -35127122 - ORR1E LTR MaLR -11 368 263 6 1457 472 297 34 22 chr6 114389956 114390135 -35126902 - L1MC LINE L1 -1451 4695 4515 6 1457 205 152 0 0 chr6 114391002 114391035 -35126002 + (CAGCC)n Simple_repeat Simple_repeat 5 37 0 6 1457 372 304 90 1 chr6 114391383 114391576 -35125461 + MIR SINE MIR 44 267 -1 6 1457 259 237 0 0 chr6 114391896 114391955 -35125082 - MIRc SINE MIR -133 135 77 6 1457 355 252 22 19 chr6 114392495 114392637 -35124400 + MIR SINE MIR 60 208 -60 6 1457 370 344 75 42 chr6 114392774 114393135 -35123902 + L1M3 LINE L1 4615 4987 -1153 6 1457 498 227 76 0 chr6 114393358 114393490 -35123547 + B1_Mur1 SINE Alu 1 142 -7 6 1457 294 302 142 62 chr6 114393497 114393737 -35123300 + L1MA9 LINE L1 5317 5575 -725 6 1457 259 353 66 16 chr6 114393757 114393878 -35123159 + PB1 SINE Alu 1 127 0 6 1457 798 172 20 7 chr6 114393885 114394031 -35123006 + B1_Mur2 SINE Alu 2 149 0 6 1457 285 98 0 0 chr6 114394177 114394218 -35122819 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 6 1457 450 276 96 49 chr6 114394266 114394612 -35122425 + L1MA9 LINE L1 5855 6219 -93 6 1457 320 244 146 0 chr6 114394705 114394787 -35122250 + ID_B1 SINE B4 130 223 -1 6 1457 668 301 11 45 chr6 114394802 114395016 -35122021 + B3A SINE B2 14 214 -2 6 1457 221 57 0 28 chr6 114395016 114395052 -35121985 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1457 868 250 182 0 chr6 114395502 114395810 -35121227 - MTE2b LTR MaLR 0 379 16 6 1457 221 237 83 26 chr6 114396304 114396460 -35120577 + (CCCTG)n Simple_repeat Simple_repeat 1 165 0 6 1457 505 311 167 25 chr6 114396726 114397049 -35119988 - MLT1A LTR MaLR -3 371 3 6 1457 218 319 52 71 chr6 114397128 114397283 -35119754 - MIRb SINE MIR -10 258 107 7 1457 809 214 45 72 chr6 114397511 114397733 -35119304 - B3A SINE B2 0 216 1 7 1457 999 164 58 11 chr6 114397756 114397947 -35119090 - B3 SINE B2 -16 200 1 7 1457 186 319 43 0 chr6 114397949 114398018 -35119019 + MIRb SINE MIR 131 202 -66 7 1457 805 232 91 26 chr6 114398415 114398645 -35118392 + B4A SINE B4 3 247 -45 7 1457 378 0 0 0 chr6 114399378 114399420 -35117617 + (CAGT)n Simple_repeat Simple_repeat 1 42 0 7 1457 495 312 20 25 chr6 114399499 114399696 -35117341 + L2a LINE L2 2949 3144 -282 7 1457 250 282 81 9 chr6 114399723 114399834 -35117203 + L2a LINE L2 3231 3349 -77 7 1457 363 44 0 0 chr6 114399875 114399920 -35117117 + (GCTG)n Simple_repeat Simple_repeat 2 46 0 7 1457 203 219 73 59 chr6 114399930 114399998 -35117039 + MIRc SINE MIR 78 146 -122 7 1457 729 323 70 21 chr6 114400104 114400389 -35116648 - MLT1A0 LTR MaLR -5 360 62 7 1457 230 303 0 0 chr6 114400407 114400473 -35116564 - tRNA-Ala-GCA tRNA tRNA -7 68 3 7 1457 306 218 25 13 chr6 114400483 114400562 -35116475 - MLT1A0 LTR MaLR -327 81 2 7 1457 377 180 44 11 chr6 114401962 114402052 -35114985 - PB1D7 SINE Alu -7 113 21 7 1457 708 243 20 0 chr6 114402164 114402316 -35114721 + RSINE1 SINE B4 11 165 0 7 1457 219 355 120 31 chr6 114402316 114402337 -35114700 + B3 SINE B2 10 201 -15 7 1457 519 17 0 0 chr6 114402337 114402397 -35114640 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 7 1457 219 355 120 31 chr6 114402397 114402413 -35114624 + B3 SINE B2 202 216 0 7 1457 508 283 160 0 chr6 114402421 114402665 -35114372 + L1MB2 LINE L1 5889 6171 0 7 1457 464 227 203 0 chr6 114402985 114403113 -35113924 + B3 SINE B2 1 154 -62 7 1457 495 0 0 0 chr6 114403113 114403168 -35113869 + (CATA)n Simple_repeat Simple_repeat 4 58 0 7 1457 334 374 95 10 chr6 114403902 114404102 -35112935 + MIR SINE MIR 46 262 0 7 1457 298 341 61 6 chr6 114405109 114405274 -35111763 - L1MB3 LINE L1 -19 6164 5991 7 1457 597 224 106 29 chr6 114405349 114405519 -35111518 + B3A SINE B2 1 183 -15 7 1457 1222 244 29 35 chr6 114405706 114406016 -35111021 - MTEa LTR MaLR -2 377 70 7 1457 25 0 0 0 chr6 114406646 114406671 -35110366 + GC_rich Low_complexity Low_complexity 1 25 0 7 1457 432 0 0 0 chr6 114407314 114407362 -35109675 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1457 255 308 156 20 chr6 114408348 114408547 -35108490 - L2c LINE L2 -123 3264 3039 7 1457 299 282 39 12 chr6 114408983 114409118 -35107919 - B3A SINE B2 0 216 78 7 1457 341 277 43 35 chr6 114410310 114410426 -35106611 + MER5B DNA MER1_type 61 177 -1 7 1457 453 66 0 0 chr6 114410496 114410557 -35106480 + (TTCA)n Simple_repeat Simple_repeat 4 64 0 7 1457 396 0 0 0 chr6 114410902 114410946 -35106091 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1457 598 280 74 82 chr6 114411248 114411505 -35105532 - B4A SINE B4 -7 285 31 7 1457 225 0 0 0 chr6 114411509 114411534 -35105503 + (TCCCC)n Simple_repeat Simple_repeat 1 25 0 7 1457 210 290 32 0 chr6 114411554 114411616 -35105421 - ID SINE ID -141 83 20 7 1457 783 236 23 11 chr6 114411618 114411794 -35105243 + B3 SINE B2 23 200 -16 7 1457 384 22 0 0 chr6 114411794 114411839 -35105198 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 7 1457 277 330 22 0 chr6 114411853 114411944 -35105093 - PB1D10 SINE Alu -5 112 20 7 1457 831 205 87 5 chr6 114412860 114413056 -35103981 - B3 SINE B2 -4 212 1 7 1457 425 260 166 25 chr6 114413707 114413948 -35103089 - L1MA5 LINE L1 -276 6024 5750 7 1457 468 204 185 0 chr6 114414147 114414255 -35102782 + ID_B1 SINE B4 88 215 -9 7 1457 309 269 34 110 chr6 114414255 114414288 -35102749 + B1_Mur4 SINE Alu 6 135 -15 7 1457 261 274 11 35 chr6 114414293 114414380 -35102657 - L1MD2 LINE L1 -70 6563 6479 7 1457 416 300 8 15 chr6 114414400 114414532 -35102505 - L1MD2 LINE L1 -360 6390 6260 7 1457 390 337 46 21 chr6 114414727 114415009 -35102028 - L1MD2 LINE L1 -558 6075 5787 7 1457 468 0 0 0 chr6 114415009 114415061 -35101976 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1457 314 214 60 0 chr6 114415095 114415179 -35101858 - L1MD2 LINE L1 -780 5757 5669 7 1457 338 298 38 102 chr6 114415179 114415215 -35101822 - B1F SINE Alu -1 148 3 7 1457 445 258 108 0 chr6 114415215 114415335 -35101702 - ID_B1 SINE B4 -8 216 84 7 1457 409 253 158 40 chr6 114415337 114415584 -35101453 - L1MD2 LINE L1 -865 5672 5397 7 1457 457 254 35 35 chr6 114415851 114415875 -35101162 + B1F SINE Alu 3 144 -4 7 1457 541 203 59 0 chr6 114415875 114415993 -35101044 + ID_B1 SINE B4 97 221 -3 7 1457 260 204 0 0 chr6 114415996 114416045 -35100992 + RSINE1 SINE B4 4 52 -113 7 1457 266 307 39 83 chr6 114416177 114416199 -35100838 - B2_Mm1a SINE B2 -19 174 153 7 1457 258 32 0 0 chr6 114416199 114416230 -35100807 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1457 637 235 15 5 chr6 114416230 114416388 -35100649 - B3A SINE B2 -41 152 2 7 1457 237 65 0 0 chr6 114416510 114416541 -35100496 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7 1457 1107 51 0 0 chr6 114416541 114416678 -35100359 - B1_Mus2 SINE Alu -10 137 1 7 1457 330 277 121 20 chr6 114416782 114416981 -35100056 - L1MD2 LINE L1 -4786 1847 1629 7 1457 245 327 62 12 chr6 114417161 114417296 -35099741 + ORR1E LTR MaLR 238 376 -3 7 1457 327 268 80 27 chr6 114417319 114417507 -35099530 - L1MD2 LINE L1 -5040 1593 1396 7 1457 297 312 0 12 chr6 114417531 114417612 -35099425 - B1F SINE Alu -52 97 18 7 1457 367 236 32 8 chr6 114417633 114417757 -35099280 - L1MD2 LINE L1 -5242 1391 1265 7 1457 594 0 0 0 chr6 114417917 114417983 -35099054 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 1457 645 234 77 19 chr6 114418117 114418326 -35098711 - ID_B1 SINE B4 0 224 4 7 1457 730 243 43 24 chr6 114418404 114418615 -35098422 - B3 SINE B2 0 216 2 7 1457 342 324 85 70 chr6 114418661 114418860 -35098177 - L1MD2 LINE L1 -5552 1081 880 7 1457 957 146 130 0 chr6 114418928 114419113 -35097924 - ORR1C1 LTR MaLR 0 378 170 7 1457 280 308 78 46 chr6 114419132 114419285 -35097752 - L1MD2 LINE L1 -6204 429 272 7 1457 1371 78 16 10 chr6 114419368 114419562 -35097475 - B2_Mm2 SINE B2 0 195 1 7 1457 729 221 14 0 chr6 114419661 114419806 -35097231 + B1_Mur2 SINE Alu 3 149 0 7 1457 681 249 25 49 chr6 114419815 114420018 -35097019 + B3A SINE B2 1 198 0 7 1457 440 228 50 0 chr6 114420054 114420155 -35096882 - PB1 SINE Alu 0 127 22 7 1457 252 0 0 0 chr6 114420386 114420414 -35096623 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 7 1457 1060 108 0 0 chr6 114420904 114421052 -35095985 - B1_Mus1 SINE Alu 0 148 1 7 1457 972 160 85 28 chr6 114421559 114421771 -35095266 + URR1A DNA MER1_type 1 224 -2 7 1457 3408 18 2 0 chr6 114421802 114422197 -35094840 - MTA_Mm LTR MaLR 0 396 1 7 1457 279 190 0 0 chr6 114422291 114422349 -35094688 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1457 663 200 143 11 chr6 114422509 114422691 -35094346 + B3 SINE B2 1 206 -10 7 1457 335 271 0 0 chr6 114422907 114422977 -35094060 - PB1D10 SINE Alu -2 115 46 7 1457 221 290 204 0 chr6 114423118 114423211 -35093826 + B3 SINE B2 74 185 -31 7 1457 360 0 0 0 chr6 114423212 114423252 -35093785 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1457 216 143 0 0 chr6 114423325 114423367 -35093670 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 7 1457 324 0 0 0 chr6 114423419 114423455 -35093582 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1457 333 315 11 21 chr6 114423470 114423564 -35093473 - B1_Mur2 SINE Alu -56 93 1 7 1457 632 298 99 54 chr6 114423639 114424122 -35092915 - L1M4 LINE L1 -410 5768 5264 7 1457 600 205 8 0 chr6 114424373 114424495 -35092542 - B1F SINE Alu -3 146 24 7 1457 230 267 17 0 chr6 114424528 114424588 -35092449 - L1M4 LINE L1 -999 5147 5087 7 1457 814 261 10 5 chr6 114424656 114424860 -35092177 - B3 SINE B2 -11 205 1 7 1458 611 148 28 0 chr6 114426198 114426306 -35090731 + PB1D9 SINE Alu 9 119 -1 7 1458 202 222 0 0 chr6 114426306 114426342 -35090695 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 1458 233 250 50 0 chr6 114426427 114426487 -35090550 - MIRb SINE MIR -9 253 195 7 1458 1013 216 0 52 chr6 114426671 114426900 -35090137 + ID_B1 SINE B4 6 222 -2 7 1458 337 293 119 62 chr6 114426904 114427097 -35089940 + B3A SINE B2 2 205 -11 7 1458 183 80 0 0 chr6 114427104 114427129 -35089908 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1458 705 24 0 0 chr6 114427129 114427211 -35089826 + (GA)n Simple_repeat Simple_repeat 2 84 0 7 1458 232 324 138 23 chr6 114427309 114427483 -35089554 + MER20 DNA MER1_type 24 217 -2 7 1458 236 100 25 0 chr6 114427804 114427844 -35089193 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 7 1458 219 167 16 62 chr6 114428558 114428622 -35088415 + T-rich Low_complexity Low_complexity 2 62 0 7 1458 229 378 0 0 chr6 114429446 114429528 -35087509 + L2a LINE L2 3303 3384 -42 7 1458 857 248 23 32 chr6 114432876 114433061 -35083976 + B3 SINE B2 2 186 -30 7 1458 207 0 0 0 chr6 114433061 114433084 -35083953 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1458 857 248 23 32 chr6 114433084 114433109 -35083928 + B3 SINE B2 187 211 -5 7 1458 799 197 117 15 chr6 114433109 114433305 -35083732 + B3 SINE B2 1 216 0 7 1458 581 322 16 5 chr6 114433313 114433497 -35083540 + B4A SINE B4 81 266 -26 7 1458 234 0 0 0 chr6 114433498 114433524 -35083513 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1458 2529 187 42 9 chr6 114433708 114434232 -35082805 + RLTR20A LTR ERVK 1 541 0 7 1458 486 49 0 0 chr6 114434422 114434483 -35082554 + (TATG)n Simple_repeat Simple_repeat 1 61 0 7 1458 422 234 113 0 chr6 114434719 114434843 -35082194 - B1_Mur4 SINE Alu -8 142 5 7 1458 875 213 50 15 chr6 114434882 114435082 -35081955 - B3 SINE B2 -8 208 2 7 1458 476 146 37 0 chr6 114435268 114435364 -35081673 - ORR1D2 LTR MaLR -245 125 38 7 1458 202 122 102 0 chr6 114435451 114435500 -35081537 + (TTAA)n Simple_repeat Simple_repeat 3 56 0 7 1458 26 0 0 0 chr6 114435522 114435548 -35081489 + AT_rich Low_complexity Low_complexity 1 26 0 7 1458 351 96 0 0 chr6 114435553 114435605 -35081432 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1458 230 267 50 0 chr6 114435607 114435667 -35081370 - B3 SINE B2 -52 164 102 7 1458 414 0 0 0 chr6 114435668 114435714 -35081323 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1458 378 0 0 0 chr6 114437450 114437492 -35079545 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1458 395 149 14 0 chr6 114437492 114437566 -35079471 + GA-rich Low_complexity Low_complexity 2 76 0 8 1458 450 159 0 0 chr6 114438447 114438554 -35078483 + (CA)n Simple_repeat Simple_repeat 2 108 0 8 1458 598 75 11 11 chr6 114438563 114438657 -35078380 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 8 1458 429 110 0 0 chr6 114439312 114439385 -35077652 + (CA)n Simple_repeat Simple_repeat 1 73 0 8 1458 189 0 0 0 chr6 114439471 114439492 -35077545 + (TC)n Simple_repeat Simple_repeat 2 22 0 8 1458 306 106 0 0 chr6 114441515 114441562 -35075475 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1458 420 99 0 0 chr6 114441644 114441715 -35075322 + (TC)n Simple_repeat Simple_repeat 2 72 0 8 1458 201 196 0 0 chr6 114443841 114443887 -35073150 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1458 822 76 0 0 chr6 114443970 114444089 -35072948 + (TC)n Simple_repeat Simple_repeat 2 120 0 8 1458 441 81 0 0 chr6 114446214 114446276 -35070761 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1458 795 55 0 0 chr6 114446367 114446476 -35070561 + (TC)n Simple_repeat Simple_repeat 2 110 0 8 1458 468 77 0 0 chr6 114448604 114448669 -35068368 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1458 1224 44 0 0 chr6 114448741 114448900 -35068137 + (TC)n Simple_repeat Simple_repeat 2 160 0 8 1458 468 77 0 0 chr6 114451028 114451093 -35065944 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1458 927 73 0 0 chr6 114451167 114451304 -35065733 + (TC)n Simple_repeat Simple_repeat 2 138 0 8 1458 192 40 0 0 chr6 114451966 114451991 -35065046 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1458 252 122 0 0 chr6 114453433 114453474 -35063563 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1458 735 42 0 0 chr6 114453546 114453641 -35063396 + (TC)n Simple_repeat Simple_repeat 2 96 0 8 1458 534 91 0 0 chr6 114455763 114455840 -35061197 + (CA)n Simple_repeat Simple_repeat 1 77 0 8 1458 675 46 0 0 chr6 114455912 114455999 -35061038 + (TC)n Simple_repeat Simple_repeat 2 88 0 8 1458 435 92 0 0 chr6 114458123 114458188 -35058849 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1458 663 25 0 0 chr6 114458260 114458341 -35058696 + (TC)n Simple_repeat Simple_repeat 2 82 0 8 1458 486 75 0 0 chr6 114460469 114460536 -35056501 + (CA)n Simple_repeat Simple_repeat 1 67 0 8 1458 1002 65 0 0 chr6 114460608 114460747 -35056290 + (TC)n Simple_repeat Simple_repeat 2 140 0 8 1458 495 0 0 0 chr6 114462889 114462944 -35054093 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 1458 1002 65 0 0 chr6 114463016 114463155 -35053882 + (TC)n Simple_repeat Simple_repeat 2 140 0 8 1458 558 86 0 0 chr6 114465283 114465364 -35051673 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 1458 1071 67 0 0 chr6 114465436 114465585 -35051452 + (TC)n Simple_repeat Simple_repeat 2 150 0 8 1458 324 102 0 0 chr6 114467713 114467762 -35049275 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1458 1157 84 0 11 chr6 114467834 114468015 -35049022 + (TC)n Simple_repeat Simple_repeat 2 180 0 8 1458 342 98 0 0 chr6 114470136 114470187 -35046850 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1458 1224 64 0 0 chr6 114470257 114470428 -35046609 + (TC)n Simple_repeat Simple_repeat 2 172 0 8 1458 192 40 0 0 chr6 114471089 114471114 -35045923 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1458 450 79 0 0 chr6 114472544 114472607 -35044430 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1458 1189 67 0 22 chr6 114472679 114472862 -35044175 + (TC)n Simple_repeat Simple_repeat 2 180 0 8 1458 192 40 0 0 chr6 114473523 114473548 -35043489 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1458 468 77 0 0 chr6 114474979 114475044 -35041993 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1458 1152 68 0 0 chr6 114475116 114475279 -35041758 + (TC)n Simple_repeat Simple_repeat 2 164 0 8 1458 192 40 0 0 chr6 114475940 114475965 -35041072 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1458 504 0 0 0 chr6 114477422 114477478 -35039559 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1458 1119 64 0 0 chr6 114477561 114477718 -35039319 + (TC)n Simple_repeat Simple_repeat 2 158 0 8 1458 360 94 0 0 chr6 114479846 114479899 -35037138 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1458 867 78 0 0 chr6 114479971 114480100 -35036937 + (TC)n Simple_repeat Simple_repeat 2 130 0 8 1458 558 67 0 0 chr6 114482228 114482303 -35034734 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 1458 462 49 0 0 chr6 114482375 114482436 -35034601 + (TC)n Simple_repeat Simple_repeat 2 62 0 8 1458 558 86 0 0 chr6 114484562 114484643 -35032394 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 1458 798 99 0 0 chr6 114484727 114484858 -35032179 + (TC)n Simple_repeat Simple_repeat 2 132 0 8 1458 558 86 0 0 chr6 114486987 114487068 -35029969 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 1458 840 95 0 0 chr6 114487150 114487287 -35029750 + (TC)n Simple_repeat Simple_repeat 2 138 0 8 1458 558 86 0 0 chr6 114489416 114489497 -35027540 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 1458 1038 82 0 0 chr6 114489581 114489740 -35027297 + (TC)n Simple_repeat Simple_repeat 2 160 0 8 1458 651 84 0 0 chr6 114491867 114491962 -35025075 + (CA)n Simple_repeat Simple_repeat 1 95 0 8 1458 759 86 0 0 chr6 114492046 114492163 -35024874 + (TC)n Simple_repeat Simple_repeat 2 118 0 8 1458 531 69 0 0 chr6 114494284 114494356 -35022681 + (CA)n Simple_repeat Simple_repeat 1 72 0 8 1458 879 99 0 0 chr6 114494441 114494582 -35022455 + (TC)n Simple_repeat Simple_repeat 2 142 0 8 1458 549 68 0 0 chr6 114496701 114496775 -35020262 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 1458 1080 71 0 0 chr6 114496860 114497015 -35020022 + (TC)n Simple_repeat Simple_repeat 2 156 0 8 1458 225 0 0 0 chr6 114497676 114497701 -35019336 + (TC)n Simple_repeat Simple_repeat 1 25 0 8 1458 378 91 0 0 chr6 114499146 114499201 -35017836 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 1458 1029 68 0 0 chr6 114499273 114499420 -35017617 + (TC)n Simple_repeat Simple_repeat 2 148 0 8 1458 330 115 0 0 chr6 114501522 114501574 -35015463 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1458 1185 71 0 0 chr6 114501659 114501828 -35015209 + (TC)n Simple_repeat Simple_repeat 2 170 0 2 1458 477 76 0 0 chr6 114503957 114504023 -35013014 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1458 1134 68 0 0 chr6 114504108 114504269 -35012768 + (TC)n Simple_repeat Simple_repeat 2 162 0 4 1458 192 40 0 0 chr6 114504930 114504955 -35012082 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 1458 342 0 0 0 chr6 114506410 114506448 -35010589 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1458 753 120 0 0 chr6 114506533 114506666 -35010371 + (TC)n Simple_repeat Simple_repeat 2 134 0 7 1458 441 81 0 0 chr6 114508776 114508838 -35008199 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1458 1283 70 0 9 chr6 114508923 114509156 -35007881 + (TC)n Simple_repeat Simple_repeat 1 230 0 9 1458 405 86 0 0 chr6 114511273 114511331 -35005706 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1458 1191 70 0 0 chr6 114511416 114511587 -35005450 + (TC)n Simple_repeat Simple_repeat 2 172 0 1 1458 192 40 0 0 chr6 114512248 114512273 -35004764 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1458 513 71 0 0 chr6 114513716 114513786 -35003251 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1458 1224 64 0 0 chr6 114513871 114514042 -35002995 + (TC)n Simple_repeat Simple_repeat 2 172 0 1 1458 192 40 0 0 chr6 114514703 114514728 -35002309 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1458 549 68 0 0 chr6 114516171 114516245 -35000792 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1458 1077 66 0 0 chr6 114516330 114516481 -35000556 + (TC)n Simple_repeat Simple_repeat 2 152 0 1 1458 558 67 0 0 chr6 114518610 114518685 -34998352 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1458 1004 104 0 10 chr6 114518775 114518982 -34998055 + (TC)n Simple_repeat Simple_repeat 1 204 0 1 1458 192 40 0 0 chr6 114519644 114519669 -34997368 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1458 468 77 0 0 chr6 114521114 114521179 -34995858 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1458 1199 73 0 11 chr6 114521263 114521444 -34995593 + (TC)n Simple_repeat Simple_repeat 2 180 0 2 1458 192 40 0 0 chr6 114522106 114522131 -34994906 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1458 504 72 0 0 chr6 114523575 114523644 -34993393 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1458 1337 45 0 11 chr6 114523752 114523934 -34993103 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1458 540 68 0 0 chr6 114526066 114526139 -34990898 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1458 1004 104 0 10 chr6 114526229 114526436 -34990601 + (TC)n Simple_repeat Simple_repeat 1 204 0 2 1458 192 40 0 0 chr6 114527098 114527123 -34989914 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1458 486 75 0 0 chr6 114528567 114528634 -34988403 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1458 786 31 0 0 chr6 114528718 114528815 -34988222 + (TC)n Simple_repeat Simple_repeat 2 98 0 3 1458 477 76 0 0 chr6 114530925 114530991 -34986046 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1458 648 36 0 0 chr6 114531074 114531157 -34985880 + (TC)n Simple_repeat Simple_repeat 2 84 0 3 1458 540 68 0 0 chr6 114533286 114533359 -34983678 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 1458 1119 83 0 0 chr6 114533443 114533612 -34983425 + (TC)n Simple_repeat Simple_repeat 2 170 0 3 1458 192 40 0 0 chr6 114534274 114534299 -34982738 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 1458 270 116 0 0 chr6 114535743 114535786 -34981251 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1458 1349 45 0 11 chr6 114535874 114536056 -34980981 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1458 252 122 0 0 chr6 114538186 114538227 -34978810 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1458 1352 39 0 11 chr6 114538322 114538502 -34978535 + (TC)n Simple_repeat Simple_repeat 2 179 0 3 1458 468 77 0 0 chr6 114540632 114540697 -34976340 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1458 1272 63 0 0 chr6 114540781 114540956 -34976081 + (TC)n Simple_repeat Simple_repeat 2 176 0 4 1458 252 122 0 0 chr6 114543086 114543127 -34973910 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1458 1004 105 0 10 chr6 114543217 114543422 -34973615 + (TC)n Simple_repeat Simple_repeat 1 202 0 4 1458 192 40 0 0 chr6 114544084 114544109 -34972928 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 1458 486 75 0 0 chr6 114545554 114545621 -34971416 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1458 1307 50 0 11 chr6 114545717 114545898 -34971139 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 1458 504 72 0 0 chr6 114548028 114548097 -34968940 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1458 1074 78 0 18 chr6 114548181 114548408 -34968629 + (TC)n Simple_repeat Simple_repeat 1 222 0 4 1458 468 77 0 0 chr6 114550537 114550602 -34966435 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1458 1074 78 0 18 chr6 114550686 114550913 -34966124 + (TC)n Simple_repeat Simple_repeat 1 222 0 5 1458 414 85 0 0 chr6 114553043 114553102 -34963935 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1458 1004 104 0 10 chr6 114553192 114553399 -34963638 + (TC)n Simple_repeat Simple_repeat 1 204 0 5 1458 192 40 0 0 chr6 114554061 114554086 -34962951 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 1458 540 68 0 0 chr6 114555531 114555604 -34961433 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1458 1251 67 0 0 chr6 114555688 114555867 -34961170 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 1459 243 217 0 0 chr6 114557976 114558036 -34959001 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1459 1227 65 0 0 chr6 114558123 114558293 -34958744 + (TC)n Simple_repeat Simple_repeat 2 171 0 5 1459 486 75 0 0 chr6 114560421 114560488 -34956549 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1459 1329 56 0 0 chr6 114560572 114560751 -34956286 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 1459 504 72 0 0 chr6 114562879 114562948 -34954089 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1459 1004 105 0 10 chr6 114563038 114563243 -34953794 + (TC)n Simple_repeat Simple_repeat 1 202 0 6 1459 192 40 0 0 chr6 114563905 114563930 -34953107 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1459 432 82 0 0 chr6 114565375 114565436 -34951601 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1459 1108 88 4 4 chr6 114565520 114565751 -34951286 + (TC)n Simple_repeat Simple_repeat 1 231 0 6 1459 243 217 0 0 chr6 114567860 114567920 -34949117 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1459 1155 68 0 0 chr6 114568007 114568169 -34948868 + (TC)n Simple_repeat Simple_repeat 2 163 0 6 1459 453 90 0 0 chr6 114570299 114570366 -34946671 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1459 1025 100 0 10 chr6 114570462 114570667 -34946370 + (TC)n Simple_repeat Simple_repeat 1 202 0 6 1459 192 40 0 0 chr6 114571329 114571354 -34945683 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1459 450 79 0 0 chr6 114572797 114572860 -34944177 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1459 1059 100 0 0 chr6 114572944 114573167 -34943870 + (TC)n Simple_repeat Simple_repeat 1 223 0 7 1459 192 40 0 0 chr6 114573828 114573853 -34943184 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1459 378 91 0 0 chr6 114575297 114575352 -34941685 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 1459 1170 85 0 0 chr6 114575436 114575613 -34941424 + (TC)n Simple_repeat Simple_repeat 2 178 0 7 1459 261 0 0 0 chr6 114577748 114577777 -34939260 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1459 1349 45 0 11 chr6 114577867 114578049 -34938988 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1459 192 40 0 0 chr6 114578712 114578737 -34938300 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1459 468 77 0 0 chr6 114580182 114580247 -34936790 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1459 1370 39 0 11 chr6 114580337 114580519 -34936518 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1459 576 65 0 0 chr6 114582649 114582726 -34934311 + (CA)n Simple_repeat Simple_repeat 1 77 0 8 1459 1108 88 4 4 chr6 114582810 114583041 -34933996 + (TC)n Simple_repeat Simple_repeat 1 231 0 8 1459 432 82 0 0 chr6 114585170 114585231 -34931806 + (CA)n Simple_repeat Simple_repeat 1 61 0 8 1459 1004 105 0 10 chr6 114585321 114585526 -34931511 + (TC)n Simple_repeat Simple_repeat 1 202 0 8 1459 468 77 0 0 chr6 114587656 114587721 -34929316 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1459 681 93 0 0 chr6 114587805 114587912 -34929125 + (TC)n Simple_repeat Simple_repeat 2 108 0 8 1459 3638 50 0 99 chr6 114588632 114589159 -34927878 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1459 2645 167 133 6 chr6 114589530 114590048 -34926989 + MT2B2 LTR ERVL 1 584 0 8 1459 210 259 19 0 chr6 114590407 114590461 -34926576 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 8 1459 180 77 0 0 chr6 114590751 114590777 -34926260 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 8 1459 195 114 0 0 chr6 114591825 114591860 -34925177 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 1459 423 0 0 0 chr6 114591921 114591968 -34925069 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1459 381 115 123 73 chr6 114592317 114592405 -34924632 - PB1D9 SINE Alu -1 149 31 9 1459 261 0 0 0 chr6 114592405 114592434 -34924603 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1459 1093 81 0 0 chr6 114592434 114592570 -34924467 - B1_Mm SINE Alu -10 137 2 9 1459 350 142 269 131 chr6 114592570 114592610 -34924427 - B1_Mur4 SINE Alu -108 42 3 9 1459 487 217 8 34 chr6 114592712 114592831 -34924206 + B1_Mur2 SINE Alu 10 125 -24 9 1459 23 54 0 0 chr6 114592853 114592890 -34924147 + AT_rich Low_complexity Low_complexity 1 37 0 9 1459 253 278 14 14 chr6 114593686 114593759 -34923278 + ID4 SINE ID 8 80 -3 9 1459 361 250 116 22 chr6 114593798 114593959 -34923078 - B3A SINE B2 -5 211 43 9 1459 545 277 0 50 chr6 114593993 114594165 -34922872 - ID_B1 SINE B4 -1 223 64 9 1459 405 0 0 0 chr6 114594247 114594292 -34922745 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1459 224 30 30 0 chr6 114594621 114594654 -34922383 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1 1459 189 0 0 0 chr6 114595100 114595121 -34921916 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1459 1190 48 14 0 chr6 114595123 114595268 -34921769 - B1_Mus2 SINE Alu 0 147 1 1 1459 222 143 95 0 chr6 114595269 114595311 -34921726 + PB1D7 SINE Alu 9 54 -66 1 1459 682 203 97 8 chr6 114595346 114595480 -34921557 + B1_Mus2 SINE Alu 2 147 0 1 1459 454 294 79 56 chr6 114595593 114595860 -34921177 + B4A SINE B4 2 274 -18 1 1459 329 260 0 0 chr6 114595963 114596036 -34921001 + ID_B1 SINE B4 150 222 -2 1 1459 614 184 61 0 chr6 114596439 114596553 -34920484 + B1_Mus2 SINE Alu 10 130 -17 1 1459 768 22 0 0 chr6 114596599 114596689 -34920348 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1459 1043 97 19 31 chr6 114596691 114596851 -34920186 - B2_Mm2 SINE B2 -35 160 3 1 1459 197 274 0 19 chr6 114596914 114596966 -34920071 - L2c LINE L2 -49 3338 3288 1 1459 460 202 32 11 chr6 114597535 114597630 -34919407 + RSINE1 SINE B4 10 106 -59 1 1459 316 283 33 0 chr6 114597746 114597840 -34919197 + PB1D10 SINE Alu 13 119 -1 1 1459 1180 48 0 58 chr6 114597901 114598056 -34918981 - B1_Mus1 SINE Alu -1 147 2 1 1459 393 70 0 0 chr6 114598083 114598140 -34918897 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1459 805 96 176 0 chr6 114598200 114598325 -34918712 - B1_Mus1 SINE Alu 0 148 2 1 1459 411 248 59 17 chr6 114598652 114598771 -34918266 - RSINE1 SINE B4 -28 137 14 1 1459 189 321 0 0 chr6 114598879 114598932 -34918105 - L2c LINE L2 -674 2745 2693 1 1459 296 267 37 56 chr6 114599663 114599770 -34917267 + PB1D10 SINE Alu 5 109 -8 1 1459 1777 137 165 22 chr6 114599851 114600172 -34916865 - ORR1B2 LTR MaLR 0 367 1 1 1459 370 247 82 0 chr6 114601331 114601428 -34915609 + PB1D10 SINE Alu 7 111 -6 1 1459 414 246 27 18 chr6 114601635 114601747 -34915290 - PB1D10 SINE Alu 0 117 5 1 1459 204 214 0 0 chr6 114601778 114601820 -34915217 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1459 670 289 127 16 chr6 114601830 114602083 -34914954 - B4A SINE B4 -11 281 1 1 1459 251 312 0 0 chr6 114602653 114602717 -34914320 - BC1_Mm scRNA scRNA -88 64 1 1 1459 247 96 19 19 chr6 114602923 114602976 -34914061 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 1 1459 842 58 8 8 chr6 114602984 114603105 -34913932 - B1_Mus1 SINE Alu 0 148 28 1 1459 1146 170 83 2 chr6 114603111 114603338 -34913699 - Lx6 LINE L1 -709 6751 6526 1 1459 251 318 92 74 chr6 114603353 114603516 -34913521 - B4 SINE B4 0 292 127 1 1459 243 0 0 0 chr6 114604588 114604615 -34912422 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1459 369 43 0 0 chr6 114604762 114604809 -34912228 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1459 448 224 92 25 chr6 114604830 114604949 -34912088 - B1F1 SINE Alu 0 149 23 1 1459 263 247 39 88 chr6 114605100 114605202 -34911835 - L1MC4 LINE L1 -493 7549 7453 1 1459 248 269 49 37 chr6 114605242 114605323 -34911714 - ID4_ SINE ID 0 83 2 1 1459 279 79 0 0 chr6 114605385 114605423 -34911614 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 1 1459 342 0 0 0 chr6 114605790 114605828 -34911209 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1459 542 274 82 0 chr6 114605839 114605913 -34911124 - RSINE1 SINE B4 -5 160 83 1 1459 351 0 0 0 chr6 114605913 114605952 -34911085 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1459 542 274 82 0 chr6 114605952 114606023 -34911014 - RSINE1 SINE B4 -83 82 4 1 1459 399 212 59 29 chr6 114607264 114607366 -34909671 + B1F2 SINE Alu 1 105 -44 1 1459 21 0 0 0 chr6 114607549 114607570 -34909467 + AT_rich Low_complexity Low_complexity 1 21 0 1 1459 451 297 34 7 chr6 114607591 114607740 -34909297 - B4A SINE B4 -22 270 118 1 1459 272 323 32 0 chr6 114607843 114607936 -34909101 + MER58C DNA MER1_type 117 212 -3 1 1459 185 363 120 11 chr6 114607949 114608041 -34908996 - L3 LINE CR1 -83 4406 4305 1 1459 185 217 22 0 chr6 114608127 114608173 -34908864 - L3 LINE CR1 -1103 3386 3340 1 1459 1210 62 0 0 chr6 114608265 114608411 -34908626 + B1_Mus2 SINE Alu 2 147 0 1 1459 547 251 147 34 chr6 114608462 114608639 -34908398 + B3A SINE B2 2 198 0 1 1459 407 250 147 32 chr6 114608788 114608828 -34908209 - CYRA11_Mm Unknown Y-chromosome -241 376 204 1 1459 917 105 0 0 chr6 114608828 114608971 -34908066 + URR1B DNA MER1_type 83 225 0 1 1459 1220 194 106 38 chr6 114608971 114609386 -34907651 - MT2A LTR ERVL -16 585 7 1 1459 207 326 7 48 chr6 114609863 114610008 -34907029 + C-rich Low_complexity Low_complexity 3 141 0 1 1459 234 267 0 48 chr6 114611316 114611379 -34905658 + B4 SINE B4 34 93 -199 1 1459 624 264 7 26 chr6 114611384 114611536 -34905501 + RSINE1 SINE B4 6 154 -11 1 1459 308 256 73 0 chr6 114611578 114611660 -34905377 + B4 SINE B4 115 202 -90 1 1459 819 191 47 42 chr6 114611906 114612097 -34904940 - B3A SINE B2 -6 192 1 1 1459 255 289 47 55 chr6 114612115 114612128 -34904909 - YREP_Mm Unknown Unknown -1490 322 282 1 1459 508 231 0 0 chr6 114612128 114612219 -34904818 + PB1D10 SINE Alu 11 101 -16 1 1459 255 289 47 55 chr6 114612219 114612243 -34904794 - YREP_Mm Unknown Unknown -1490 281 196 1 1459 281 182 43 31 chr6 114612515 114612604 -34904433 - B1_Mur4 SINE Alu -33 87 2 1 1459 254 232 27 55 chr6 114612540 114612613 -34904424 - B4A SINE B4 -141 151 81 1 1459 484 283 151 0 chr6 114612761 114612973 -34904064 - L1MA4 LINE L1 -361 5939 5696 1 1459 342 283 20 55 chr6 114613059 114613205 -34903832 - L1MA4 LINE L1 -1273 4870 4730 1 1459 675 209 54 0 chr6 114613227 114613356 -34903681 - B1_Mur1 SINE Alu -13 136 1 1 1459 375 260 10 0 chr6 114613356 114613460 -34903577 - L1MA4 LINE L1 -1397 4746 4642 1 1459 232 284 68 0 chr6 114613466 114613554 -34903483 - PB1D10 SINE Alu -21 96 3 1 1459 850 287 86 7 chr6 114613562 114614088 -34902949 - L1MA4 LINE L1 -1500 4640 4057 1 1459 2055 149 11 46 chr6 114614210 114614577 -34902460 + ORR1B1 LTR MaLR 41 394 0 1 1459 2632 118 91 7 chr6 114614654 114615072 -34901965 + RLTR11B LTR ERVK 1 453 0 1 1459 231 238 62 12 chr6 114615256 114615337 -34901700 + L1M4 LINE L1 5347 5431 -753 1 1459 321 215 35 92 chr6 114615864 114615951 -34901086 - ID4_ SINE ID 0 83 2 1 1459 399 304 93 14 chr6 114616387 114616527 -34900510 - B3A SINE B2 0 198 48 1 1459 244 264 0 0 chr6 114617174 114617227 -34899810 + B3A SINE B2 16 68 -130 1 1459 654 123 110 7 chr6 114617291 114617446 -34899591 + RCHARR1 DNA MER1_type 735 905 -69 1 1459 832 306 122 3 chr6 114617446 114617748 -34899289 - MTEa LTR MaLR 0 379 42 1 1459 3374 277 177 30 chr6 114617775 114617904 -34899133 - MTEa-int LTR MaLR -2 1578 1447 1 1459 1141 154 27 0 chr6 114617904 114618092 -34898945 + B2_Mm1t SINE B2 1 193 0 1 1459 3374 277 177 30 chr6 114618092 114619338 -34897699 - MTEa-int LTR MaLR -134 1446 1 1 1459 326 286 122 0 chr6 114619338 114619436 -34897601 - MTEa LTR MaLR 0 379 270 1 1459 496 318 92 20 chr6 114619995 114620290 -34896747 - Lx8 LINE L1 0 7473 7158 1 1459 211 171 0 0 chr6 114620326 114620361 -34896676 - B1F SINE Alu -96 53 19 1 1459 482 292 17 111 chr6 114620387 114620568 -34896469 + B4 SINE B4 60 223 -69 1 1459 765 175 28 28 chr6 114620429 114620570 -34896467 + B1_Mur2 SINE Alu 9 149 0 1 1459 583 280 8 0 chr6 114621795 114621920 -34895117 - ID_B1 SINE B4 -15 209 84 1 1459 304 330 77 41 chr6 114621920 114621987 -34895050 + YREP_Mm Unknown Unknown 190 388 -1424 1 1459 226 264 27 14 chr6 114622017 114622090 -34894947 + ID4_ SINE ID 1 74 -9 1 1459 923 156 14 0 chr6 114622343 114622484 -34894553 + B1_Mur2 SINE Alu 5 147 -2 1 1459 587 81 12 0 chr6 114622677 114622763 -34894274 + (TCTA)n Simple_repeat Simple_repeat 1 87 0 1 1459 639 246 8 0 chr6 114622820 114622946 -34894091 - B3 SINE B2 -75 141 15 1 1459 233 271 17 0 chr6 114623248 114623307 -34893730 - ID SINE ID -143 81 22 1 1459 829 216 85 50 chr6 114624083 114624283 -34892754 + MTD LTR MaLR 4 210 -209 1 1459 1137 196 20 5 chr6 114624309 114624504 -34892533 - B3 SINE B2 -17 199 2 1 1459 562 292 18 24 chr6 114624546 114624711 -34892326 - RSINE1 SINE B4 0 165 2 1 1459 1016 205 10 50 chr6 114624818 114624835 -34892202 - B3 SINE B2 -23 193 178 1 1459 189 0 0 0 chr6 114624835 114624856 -34892181 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1459 1016 205 10 50 chr6 114624856 114625038 -34891999 - B3 SINE B2 -39 177 2 1 1459 21 57 0 0 chr6 114626535 114626570 -34890467 + AT_rich Low_complexity Low_complexity 1 35 0 1 1459 701 182 172 22 chr6 114626570 114626750 -34890287 - B3 SINE B2 -6 210 4 1 1459 1625 202 100 31 chr6 114627255 114627644 -34889393 - MTD LTR MaLR 0 419 4 1 1459 21 0 0 0 chr6 114627736 114627757 -34889280 + GC_rich Low_complexity Low_complexity 1 21 0 1 1459 388 222 12 0 chr6 114628427 114628508 -34888529 - MTD LTR MaLR -273 146 65 1 1459 385 274 94 0 chr6 114629590 114629696 -34887341 + B1_Mur1 SINE Alu 5 120 -29 1 1459 353 224 87 0 chr6 114630561 114630648 -34886389 + B1_Mur1 SINE Alu 24 147 -2 1 1459 313 312 61 20 chr6 114632551 114632698 -34884339 + L1MB7 LINE L1 5912 6064 -120 1 1459 492 242 250 4 chr6 114632801 114633029 -34884008 + B4A SINE B4 1 284 -8 1 1459 493 227 176 0 chr6 114634222 114634341 -34882696 - ID_B1 SINE B4 -7 217 78 1 1459 729 268 33 23 chr6 114635125 114635339 -34881698 + B3 SINE B2 1 216 0 1 1459 807 168 243 0 chr6 114635539 114635712 -34881325 + B3 SINE B2 2 216 0 1 1459 197 293 40 0 chr6 114636663 114636738 -34880299 + L2b LINE L2 2919 2996 -379 1 1459 308 287 31 39 chr6 114637060 114637187 -34879850 + L1MEg LINE L1 1856 1981 -4103 1 1459 690 75 0 0 chr6 114637402 114637495 -34879542 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 1459 845 189 7 0 chr6 114638060 114638203 -34878834 + B1_Mur3 SINE Alu 4 147 -2 2 1459 278 289 11 0 chr6 114640176 114640266 -34876771 - MER63A DNA AcHobo -109 101 11 2 1459 237 288 62 0 chr6 114641831 114641911 -34875126 - MIRc SINE MIR -122 146 62 2 1459 225 0 0 0 chr6 114642022 114642047 -34874990 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1459 1036 79 50 0 chr6 114642047 114642187 -34874850 - B1_Mus1 SINE Alu 0 148 2 2 1459 185 154 0 25 chr6 114642393 114642433 -34874604 + CT-rich Low_complexity Low_complexity 1 39 0 2 1459 1011 219 38 19 chr6 114642453 114642662 -34874375 - ID_B1 SINE B4 -11 213 1 2 1459 1897 179 92 3 chr6 114643248 114643617 -34873420 - MTD LTR MaLR 0 419 18 2 1459 689 202 85 0 chr6 114643827 114643956 -34873081 + B1_Mur2 SINE Alu 3 142 -7 2 1459 595 236 28 35 chr6 114643970 114644115 -34872922 + RSINE1 SINE B4 8 151 -14 2 1459 1372 95 11 0 chr6 114644510 114644700 -34872337 + B2_Mm1a SINE B2 1 192 -1 2 1459 636 219 124 0 chr6 114644700 114644837 -34872200 + B3 SINE B2 29 182 -34 2 1459 651 234 7 0 chr6 114644837 114644982 -34872055 - L1MC4a LINE L1 -998 6884 6739 2 1459 224 307 0 54 chr6 114645351 114645444 -34871593 + CT-rich Low_complexity Low_complexity 5 92 0 2 1459 289 133 100 0 chr6 114646202 114646262 -34870775 - B3 SINE B2 0 216 151 2 1459 627 225 0 0 chr6 114646263 114646383 -34870654 - PB1D9 SINE Alu 0 120 1 2 1459 349 143 143 0 chr6 114646383 114646474 -34870563 + L1ME3A LINE L1 5847 5950 -223 2 1459 202 122 170 75 chr6 114647564 114647617 -34869420 - MIRc SINE MIR -84 184 127 2 1459 341 337 6 6 chr6 114649300 114649473 -34867564 + (TG)n Simple_repeat Simple_repeat 1 173 0 2 1459 392 299 11 33 chr6 114649525 114649708 -34867329 + (TATG)n Simple_repeat Simple_repeat 1 179 0 2 1459 233 293 0 0 chr6 114649968 114650043 -34866994 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 1459 1557 29 0 0 chr6 114650384 114650593 -34866444 + (CCCCAG)n Simple_repeat Simple_repeat 1 209 0 2 1459 810 149 236 0 chr6 114650834 114650995 -34866042 + B3 SINE B2 3 201 -15 2 1459 223 310 0 0 chr6 114651066 114651124 -34865913 + B4A SINE B4 9 66 -226 2 1459 302 224 52 0 chr6 114651429 114651525 -34865512 - PB1D9 SINE Alu -3 147 41 2 1459 339 25 0 0 chr6 114652273 114652313 -34864724 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1459 639 240 29 107 chr6 114652546 114652751 -34864286 + B3A SINE B2 1 189 -6 2 1459 258 56 0 0 chr6 114653537 114653573 -34863464 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1459 486 0 0 0 chr6 114653794 114653848 -34863189 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1459 379 266 69 55 chr6 114653850 114654032 -34863005 + B4 SINE B4 4 281 -11 2 1459 221 203 169 0 chr6 114654141 114654200 -34862837 + ID SINE ID 12 80 -144 2 1459 1256 221 151 13 chr6 114654523 114654835 -34862202 - MTC LTR MaLR -66 355 1 2 1459 217 292 0 58 chr6 114655605 114655674 -34861363 + MIRc SINE MIR 16 80 -188 2 1459 564 200 0 0 chr6 114655877 114656027 -34861010 + (CA)n Simple_repeat Simple_repeat 2 151 0 2 1459 1061 98 0 27 chr6 114656977 114657124 -34859913 + B1_Mus1 SINE Alu 1 143 -5 2 1459 265 248 55 37 chr6 114658105 114658214 -34858823 - MER53 DNA hAT -64 129 19 2 1459 257 143 27 54 chr6 114659554 114659628 -34857409 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 2 1459 368 221 225 40 chr6 114661294 114661445 -34855592 - L1MEg LINE L1 -4438 1646 1468 2 1459 448 225 16 0 chr6 114661519 114661648 -34855389 + CT-rich Low_complexity Low_complexity 3 133 0 2 1459 188 277 0 0 chr6 114662080 114662127 -34854910 - MIR SINE MIR -32 230 184 2 1459 354 311 82 0 chr6 114662150 114662272 -34854765 - B1F1 SINE Alu -4 145 14 2 1459 210 216 78 39 chr6 114662835 114662912 -34854125 + AluG_3 SINE Alu 142 221 -90 2 1459 202 294 74 83 chr6 114663585 114663752 -34853285 + MIRb SINE MIR 16 184 -92 2 1459 238 211 91 13 chr6 114664082 114664159 -34852878 - ID4 SINE ID 0 83 1 2 1459 477 0 0 0 chr6 114665056 114665109 -34851928 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1459 265 161 34 22 chr6 114665321 114665410 -34851627 + CT-rich Low_complexity Low_complexity 1 90 0 2 1459 189 0 0 0 chr6 114665842 114665863 -34851174 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2 1459 378 286 29 0 chr6 114666272 114666377 -34850660 + PB1D10 SINE Alu 1 108 -9 2 1459 601 319 32 46 chr6 114666386 114666603 -34850434 + B4A SINE B4 2 215 -77 2 1459 717 118 0 0 chr6 114666627 114666737 -34850300 + (TG)n Simple_repeat Simple_repeat 2 111 0 2 1459 542 248 150 0 chr6 114666812 114666965 -34850072 - MTEa LTR MaLR 0 379 204 2 1459 519 313 81 84 chr6 114666974 114667309 -34849728 - RLTR18B LTR ERVK 0 512 179 2 1459 873 207 58 26 chr6 114667418 114667607 -34849430 - MTEa LTR MaLR -180 199 5 2 1459 369 0 0 0 chr6 114667941 114667982 -34849055 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1459 793 216 48 40 chr6 114668226 114668444 -34848593 - B3A SINE B2 0 216 1 2 1459 207 290 88 97 chr6 114668812 114668982 -34848055 + MIRc SINE MIR 16 192 -84 2 1459 225 196 0 0 chr6 114669705 114669756 -34847281 + CT-rich Low_complexity Low_complexity 4 54 0 2 1459 535 211 113 34 chr6 114671134 114671311 -34845726 + B3A SINE B2 1 191 -7 2 1459 327 252 110 18 chr6 114671734 114671843 -34845194 + PB1D7 SINE Alu 1 119 -1 2 1459 459 73 0 0 chr6 114671980 114672048 -34844989 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1459 468 77 0 0 chr6 114672043 114672108 -34844929 + (TCCCC)n Simple_repeat Simple_repeat 4 68 0 2 1459 330 240 0 39 chr6 114672401 114672479 -34844558 - RSINE1 SINE B4 -57 108 34 2 1459 786 178 184 0 chr6 114672451 114672636 -34844401 + MTC LTR MaLR 203 421 0 2 1459 373 226 32 21 chr6 114673248 114673343 -34843694 + MTD LTR MaLR 25 120 -299 2 1459 184 104 0 59 chr6 114673353 114673404 -34843633 + T-rich Low_complexity Low_complexity 1 48 0 2 1459 858 55 0 18 chr6 114673404 114673515 -34843522 - B1_Mm SINE Alu -1 146 38 2 1459 937 213 207 12 chr6 114673509 114673751 -34843286 + MTD LTR MaLR 117 405 -14 2 1459 284 263 40 0 chr6 114674347 114674423 -34842614 - ID4_ SINE ID -3 80 2 2 1459 541 254 226 0 chr6 114674456 114674637 -34842400 - ID_B1 SINE B4 -2 222 1 2 1459 1281 135 82 0 chr6 114675597 114675804 -34841233 - URR1A DNA MER1_type 0 226 3 2 1459 369 0 0 0 chr6 114676311 114676352 -34840685 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 2 1459 1131 269 114 47 chr6 114677135 114677662 -34839375 - Lx8 LINE L1 -8 7465 6904 2 1459 641 277 54 0 chr6 114678286 114678470 -34838567 - B3A SINE B2 -3 195 2 2 1459 499 202 135 0 chr6 114678500 114678604 -34838433 + B3 SINE B2 1 118 -98 2 1459 23 0 0 0 chr6 114678718 114678741 -34838296 + AT_rich Low_complexity Low_complexity 1 23 0 2 1459 887 124 7 0 chr6 114678779 114678924 -34838113 + (GA)n Simple_repeat Simple_repeat 2 147 0 2 1459 498 291 231 9 chr6 114679561 114679795 -34837242 + B4A SINE B4 1 286 -6 2 1459 372 43 0 0 chr6 114679820 114679866 -34837171 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1459 189 0 0 0 chr6 114679866 114679887 -34837150 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1459 378 0 0 0 chr6 114679904 114679946 -34837091 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1459 390 74 0 0 chr6 114679946 114679999 -34837038 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1459 4142 162 134 8 chr6 114680806 114681392 -34835645 - RMER19B LTR ERVK -20 882 242 2 1459 252 0 0 0 chr6 114681392 114681420 -34835617 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1459 4142 162 134 8 chr6 114681420 114681615 -34835422 - RMER19B LTR ERVK -661 241 3 2 1459 534 297 91 73 chr6 114681656 114681943 -34835094 + B4A SINE B4 1 292 0 2 1459 237 337 72 68 chr6 114682256 114682561 -34834476 + MTEb LTR MaLR 67 370 0 2 1459 355 239 57 86 chr6 114682584 114682689 -34834348 + PB1D9 SINE Alu 19 120 0 2 1459 574 200 192 12 chr6 114682698 114682865 -34834172 + B3A SINE B2 2 198 0 2 1459 187 302 89 50 chr6 114683012 114683113 -34833924 - L2c LINE L2 -232 3155 3051 2 1459 233 300 0 0 chr6 114684268 114684328 -34832709 + MIRb SINE MIR 116 175 -93 2 1459 256 250 63 38 chr6 114684891 114684970 -34832067 - Charlie4z DNA MER1_type -3 164 84 2 1459 408 217 0 0 chr6 114685479 114685571 -34831466 + (TA)n Simple_repeat Simple_repeat 1 92 0 2 1459 717 237 83 10 chr6 114685584 114685776 -34831261 - B3 SINE B2 -10 206 1 2 1459 773 277 44 0 chr6 114685779 114685985 -34831052 - B3 SINE B2 0 216 2 2 1459 409 220 115 39 chr6 114686085 114686189 -34830848 + PB1D7 SINE Alu 1 112 -8 2 1459 529 290 15 8 chr6 114686874 114687006 -34830031 - RSINE1 SINE B4 -29 136 4 2 182 329 329 119 58 chr6 114687868 114688129 -34828908 + B4 SINE B4 1 277 -15 2 1460 239 239 43 43 chr6 114688189 114688259 -34828778 + B4 SINE B4 13 82 -210 2 1460 506 143 0 11 chr6 114690157 114690249 -34826788 + GA-rich Low_complexity Low_complexity 1 91 0 2 1460 525 71 0 0 chr6 114693811 114693881 -34823156 + (GAAAA)n Simple_repeat Simple_repeat 2 71 0 2 1460 892 171 7 7 chr6 114694279 114694426 -34822611 + B1_Mur1 SINE Alu 1 147 -2 2 1460 306 0 0 0 chr6 114694433 114694467 -34822570 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1460 681 273 75 5 chr6 114694471 114694659 -34822378 - B3 SINE B2 -15 201 1 2 1460 206 139 28 0 chr6 114695333 114695369 -34821668 + C-rich Low_complexity Low_complexity 6 42 0 3 1460 427 324 68 68 chr6 114696884 114697106 -34819931 - LTR82B Low_complexity ERVL -122 708 487 3 1460 759 216 40 0 chr6 114697288 114697363 -34819674 + ID SINE ID 8 88 -136 3 1460 310 281 85 0 chr6 114697363 114697445 -34819592 + B1F2 SINE Alu 4 92 -57 3 1460 1086 254 104 25 chr6 114697656 114698012 -34819025 - Lx8 LINE L1 -94 7379 6996 3 1460 1045 239 86 33 chr6 114698012 114698346 -34818691 - ORR1D2 LTR MaLR -7 363 1 3 1460 806 178 41 0 chr6 114698352 114698498 -34818539 - Lx8 LINE L1 -479 6994 6843 3 1460 2347 280 93 89 chr6 114698511 114699957 -34817080 - L1_Mur3 LINE L1 -147 5733 4283 3 1460 4354 209 101 16 chr6 114699954 114700866 -34816171 - RMER1A Other Other 0 1030 42 3 1460 1021 234 115 54 chr6 114700866 114701242 -34815795 - RMER1B Other Other -553 513 45 3 1460 1421 261 60 6 chr6 114701970 114702464 -34814573 - L1_Mur3 LINE L1 -1532 4315 3802 3 1460 366 23 0 0 chr6 114702472 114702515 -34814522 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1460 338 296 0 36 chr6 114703177 114703289 -34813748 + CT-rich Low_complexity Low_complexity 1 108 0 3 1460 333 315 119 53 chr6 114703725 114704137 -34812900 - L1MB7 LINE L1 -20 6662 6224 3 1460 227 182 36 18 chr6 114704153 114704209 -34812828 - L1MB7 LINE L1 -499 6177 6121 3 1460 1087 229 188 19 chr6 114704285 114704658 -34812379 - Lx8 LINE L1 0 7473 7038 3 1460 227 308 47 0 chr6 114704984 114705091 -34811946 - L1MB7 LINE L1 -977 5667 5556 3 1460 331 203 16 0 chr6 114705256 114705320 -34811717 + B3A SINE B2 1 65 -133 3 1460 218 266 107 60 chr6 114705320 114705340 -34811697 + B4 SINE B4 1 88 -204 3 1460 1500 44 11 5 chr6 114705355 114705539 -34811498 + B2_Mm2 SINE B2 4 188 -7 3 1460 799 273 130 82 chr6 114705654 114706475 -34810562 - L1MB7 LINE L1 -5487 1055 195 3 1460 9167 112 15 16 chr6 114707082 114708853 -34808184 - Lx3B LINE L1 0 6973 5206 3 1460 290 372 85 23 chr6 114709241 114709417 -34807620 - LTR84b LTR ERVL -289 472 286 3 1460 41975 5 0 1 chr6 114709445 114715614 -34801423 - L1Md_A LINE L1 0 6582 419 3 1460 614 257 104 14 chr6 114715616 114715837 -34801200 - L1MC1 LINE L1 -13 6495 6255 3 1460 397 308 198 43 chr6 114716231 114716737 -34800300 - L1MC1 LINE L1 -486 6022 5439 3 1460 987 282 170 15 chr6 114716739 114717469 -34799568 - L1MC1 LINE L1 -837 5484 4642 3 1460 424 265 77 18 chr6 114717616 114717785 -34799252 - L1MC1 LINE L1 -2148 4173 3995 3 1460 683 199 22 7 chr6 114717817 114717954 -34799083 - B1F2 SINE Alu -10 139 1 3 1460 985 110 32 7 chr6 114718078 114718233 -34798804 - URR1A DNA MER1_type 0 226 68 3 1460 358 235 132 0 chr6 114718417 114718583 -34798454 - L1MC1 LINE L1 -3201 3120 2933 3 1460 433 302 34 34 chr6 114718589 114718764 -34798273 - B3A SINE B2 0 198 24 3 1460 388 269 91 30 chr6 114718764 114718963 -34798074 - L1MC1 LINE L1 -3452 2869 2659 3 1460 761 346 62 11 chr6 114718993 114719268 -34797769 + B4A SINE B4 1 289 -3 3 1460 777 258 71 10 chr6 114719262 114719458 -34797579 - 7SLRNA srpRNA srpRNA -103 211 4 3 1460 263 355 0 14 chr6 114719528 114719671 -34797366 + (CA)n Simple_repeat Simple_repeat 1 141 0 3 1460 360 0 0 0 chr6 114719708 114719748 -34797289 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1460 594 0 0 0 chr6 114719748 114719814 -34797223 + (GGGA)n Simple_repeat Simple_repeat 2 67 0 3 1460 515 286 156 0 chr6 114720052 114720116 -34796921 - L1MC1 LINE L1 -4325 2183 2117 3 1460 1718 194 13 76 chr6 114720116 114720511 -34796526 - ORR1D1 LTR MaLR -4 370 1 3 1460 515 286 156 0 chr6 114720511 114720722 -34796315 - L1MC1 LINE L1 -4392 2116 1866 3 1460 297 286 0 13 chr6 114720740 114720818 -34796219 + RSINE1 SINE B4 4 80 -85 3 1460 479 225 115 94 chr6 114720829 114721020 -34796017 + B3A SINE B2 1 195 -3 3 1460 275 266 196 34 chr6 114721117 114721296 -34795741 - L1MC1 LINE L1 -5610 898 691 3 1460 469 292 139 9 chr6 114721357 114721696 -34795341 - L1MC1 LINE L1 -6006 502 120 3 1460 347 359 38 6 chr6 114721777 114721934 -34795103 - LTR84b LTR ERVL -484 277 116 3 1460 573 246 77 16 chr6 114721934 114722128 -34794909 + B3 SINE B2 1 206 -10 3 1460 332 345 46 20 chr6 114722135 114722286 -34794751 + HAL1-3A_ME LINE L1 2284 2438 -420 3 1460 554 218 0 52 chr6 114722339 114722455 -34794582 + RSINE1 SINE B4 11 120 -45 3 1460 22 35 0 0 chr6 114722485 114722514 -34794523 + AT_rich Low_complexity Low_complexity 1 29 0 3 1460 772 206 7 21 chr6 114722826 114722970 -34794067 + RSINE1 SINE B4 2 143 -22 3 1460 276 198 167 114 chr6 114723695 114723713 -34793324 - PB1D9 SINE Alu 0 120 109 3 1460 207 0 0 0 chr6 114723713 114723736 -34793301 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 3 1460 321 198 167 114 chr6 114723736 114723831 -34793206 - B1_Mus1 SINE Alu -12 108 1 3 1460 312 27 0 0 chr6 114723973 114724010 -34793027 + (GTTTG)n Simple_repeat Simple_repeat 1 37 0 3 1460 674 171 73 8 chr6 114724010 114724134 -34792903 - B1F2 SINE Alu -13 136 5 3 1460 440 80 302 59 chr6 114724168 114724287 -34792750 - B2_Mm2 SINE B2 -1 194 47 3 1460 1105 110 27 70 chr6 114724350 114724536 -34792501 - B2_Mm1t SINE B2 -14 179 2 3 1460 375 333 139 46 chr6 114724983 114725285 -34791752 - L1MC4a LINE L1 -1935 5947 5618 3 1460 331 345 26 46 chr6 114725654 114725806 -34791231 - L1ME3A LINE L1 -114 6059 5911 3 1460 587 274 70 23 chr6 114726460 114726632 -34790405 - B3A SINE B2 -16 182 3 3 1460 723 217 28 0 chr6 114726731 114726874 -34790163 - RSINE1 SINE B4 -5 160 14 3 1460 340 306 85 24 chr6 114728506 114728670 -34788367 + MER102b DNA MER1_type 2 175 -166 3 1460 293 208 27 27 chr6 114728752 114728826 -34788211 + ID4_ SINE ID 4 77 -6 3 1460 288 246 15 15 chr6 114729138 114729204 -34787833 + ID4 SINE ID 5 70 -13 3 1460 494 220 11 0 chr6 114729204 114729295 -34787742 + ID_B1 SINE B4 131 222 -2 3 1460 23 78 0 0 chr6 114729302 114729353 -34787684 + AT_rich Low_complexity Low_complexity 1 51 0 3 1460 1492 63 16 0 chr6 114729845 114730036 -34787001 - B2_Mm2 SINE B2 0 195 2 3 1460 516 167 8 95 chr6 114730208 114730334 -34786703 - B1_Mur1 SINE Alu 0 149 35 3 1460 3148 104 155 34 chr6 114733552 114734088 -34782949 - MT2B LTR ERVL 0 601 1 3 1460 268 250 47 70 chr6 114735192 114735278 -34781759 + RSINE1 SINE B4 82 165 0 3 1460 279 0 0 0 chr6 114735296 114735327 -34781710 + (TAA)n Simple_repeat Simple_repeat 1 31 0 3 1460 1190 75 0 0 chr6 114735440 114735587 -34781450 - B1_Mus1 SINE Alu 0 148 2 3 1460 893 122 6 104 chr6 114735718 114735882 -34781155 - B1_Mur3 SINE Alu 0 149 2 3 1460 325 367 51 0 chr6 114736093 114736251 -34780786 - MER2 DNA MER2_type -65 280 115 3 1460 565 264 42 28 chr6 114736334 114736351 -34780686 + B1F2 SINE Alu 3 148 -1 3 1460 705 228 0 0 chr6 114736351 114736478 -34780559 + ID_B1 SINE B4 98 224 0 3 1460 21 57 0 0 chr6 114736850 114736885 -34780152 + AT_rich Low_complexity Low_complexity 1 35 0 3 1460 321 312 8 59 chr6 114737257 114737376 -34779661 - MER106B DNA MER1_type -939 120 8 3 1460 255 351 71 6 chr6 114737794 114737963 -34779074 - L1M5 LINE L1 -703 5537 5358 3 1460 182 284 56 56 chr6 114738152 114738223 -34778814 + MER5B DNA MER1_type 25 95 -83 3 1460 1430 145 127 16 chr6 114738586 114738797 -34778240 - RMER10B LTR ERVL 0 398 175 3 1460 264 100 0 0 chr6 114738797 114738837 -34778200 + (CAG)n Simple_repeat Simple_repeat 2 41 0 3 1460 1430 151 151 16 chr6 114738837 114738956 -34778081 - RMER10B LTR ERVL -224 174 35 3 1460 248 299 25 25 chr6 114742847 114743005 -34774032 + L1MB7 LINE L1 5935 6092 -92 3 1460 5077 67 12 13 chr6 114743074 114743745 -34773292 + L1Md_F2 LINE L1 5909 6578 -4 3 1460 234 0 0 0 chr6 114743748 114743774 -34773263 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1460 295 54 71 0 chr6 114744714 114744770 -34772267 + (CAGAGA)n Simple_repeat Simple_repeat 2 61 0 3 1460 725 223 77 44 chr6 114745437 114745620 -34771417 + B3 SINE B2 22 210 -6 3 1460 614 208 102 16 chr6 114745625 114745752 -34771285 + B1_Mur1 SINE Alu 3 140 -9 3 1460 303 330 85 75 chr6 114745967 114746167 -34770870 - MER34A LTR ERV1 -369 202 1 3 1460 225 333 0 0 chr6 114746713 114746776 -34770261 - ID4_ SINE ID -19 64 2 3 1460 414 0 0 0 chr6 114747106 114747152 -34769885 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1460 1128 82 7 0 chr6 114747314 114747460 -34769577 + B1_Mus1 SINE Alu 2 148 0 3 1460 818 246 0 43 chr6 114747473 114747660 -34769377 + ID_B1 SINE B4 1 179 -45 3 1460 991 293 27 34 chr6 114747671 114748205 -34768832 - L1MB5 LINE L1 -53 6125 5607 3 1460 276 292 126 42 chr6 114748283 114748426 -34768611 - B4A SINE B4 -67 225 71 3 1460 476 298 8 8 chr6 114749197 114749319 -34767718 + PB1 SINE Alu 3 124 -3 3 1460 224 328 0 0 chr6 114749772 114749833 -34767204 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1460 519 17 0 0 chr6 114750132 114750192 -34766845 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1460 954 349 72 51 chr6 114750625 114751150 -34765887 + MER44B DNA MER2_type 11 546 -4 3 1460 570 291 161 13 chr6 114751900 114752130 -34764907 - B4A SINE B4 -2 290 27 3 1460 631 326 97 29 chr6 114753220 114753561 -34763476 + Tigger13a DNA MER2_type 1 364 -407 3 1460 239 282 26 0 chr6 114754608 114754686 -34762351 - ID4 SINE ID -1 82 3 3 1460 973 120 0 8 chr6 114755388 114755648 -34761389 + (TG)n Simple_repeat Simple_repeat 1 257 0 3 1460 244 264 55 14 chr6 114755658 114755731 -34761306 - B4A SINE B4 -1 291 216 3 1460 419 257 38 0 chr6 114755740 114755845 -34761192 - B4A SINE B4 -183 109 1 3 1460 186 43 0 0 chr6 114756566 114756589 -34760448 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1460 217 226 0 36 chr6 114756633 114756688 -34760349 - PB1D10 SINE Alu 0 117 65 3 1460 366 321 0 0 chr6 114756707 114756813 -34760224 + (TGGG)n Simple_repeat Simple_repeat 3 108 0 3 1460 1304 215 63 18 chr6 114756979 114757335 -34759702 - MTD LTR MaLR -14 386 8 3 1460 258 233 83 0 chr6 114758762 114758822 -34758215 - ID4 SINE ID -8 75 11 3 1460 551 316 108 50 chr6 114760716 114760976 -34756061 - B4 SINE B4 -17 275 1 3 1460 368 296 0 0 chr6 114761378 114761459 -34755578 + ID4_ SINE ID 1 81 -2 3 1460 209 119 24 0 chr6 114763165 114763207 -34753830 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1460 216 97 0 0 chr6 114763415 114763446 -34753591 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 3 1460 3387 113 10 6 chr6 114763448 114763475 -34753562 - L1_Mus3 LINE L1 0 6638 6612 3 1460 1098 64 43 0 chr6 114763475 114763616 -34753421 - B1_Mus1 SINE Alu 0 148 2 3 1460 3387 113 10 6 chr6 114763616 114764095 -34752942 - L1_Mus3 LINE L1 -27 6611 6130 3 1460 365 221 34 75 chr6 114764752 114764899 -34752138 + L1MB3 LINE L1 6043 6183 0 4 1460 499 187 294 18 chr6 114764951 114764976 -34752061 - B3 SINE B2 -5 211 182 4 1460 525 16 0 0 chr6 114764976 114765038 -34751999 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1460 499 187 294 18 chr6 114765038 114765175 -34751862 - B3 SINE B2 -35 181 4 4 1460 324 0 0 0 chr6 114765708 114765744 -34751293 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1460 293 329 0 0 chr6 114766608 114766681 -34750356 + ID4_ SINE ID 2 74 -9 4 1460 351 184 0 0 chr6 114767983 114768070 -34748967 + GA-rich Low_complexity Low_complexity 1 87 0 4 1460 211 273 42 70 chr6 114769059 114769130 -34747907 + ID4 SINE ID 15 83 0 4 1460 767 50 234 40 chr6 114769139 114769263 -34747774 + B1_Mus1 SINE Alu 1 148 0 4 1460 230 261 0 0 chr6 114769284 114769330 -34747707 + ZP3AR Satellite Satellite 37 82 -130 4 1460 593 180 0 62 chr6 114769291 114769421 -34747616 + BC1_Mm scRNA scRNA 2 123 -29 4 1460 448 167 0 14 chr6 114769647 114769720 -34747317 + RSINE1 SINE B4 75 146 -19 4 1460 370 269 45 96 chr6 114769775 114769911 -34747126 + PB1 SINE Alu 7 133 -16 4 1460 198 212 103 103 chr6 114770361 114770477 -34746560 - MIR3 SINE MIR -78 130 15 4 1460 249 275 24 48 chr6 114770969 114771053 -34745984 - MER119 DNA MER1_type -89 494 413 4 1460 1170 196 9 18 chr6 114772668 114772687 -34744350 - B3 SINE B2 0 216 201 4 1460 234 0 0 0 chr6 114772687 114772713 -34744324 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 4 1460 1170 196 9 18 chr6 114772713 114772911 -34744126 - B3 SINE B2 -16 200 1 4 1460 231 232 18 0 chr6 114772944 114773000 -34744037 + ID4 SINE ID 2 58 -25 4 1460 529 261 78 75 chr6 114773089 114773383 -34743654 - ORR1E LTR MaLR -40 319 25 4 1460 373 283 67 28 chr6 114773472 114773650 -34743387 + L1M4 LINE L1 4142 4326 -1820 4 1460 1273 48 0 0 chr6 114773673 114773820 -34743217 - B1_Mus2 SINE Alu 0 147 1 4 1460 522 271 62 72 chr6 114773825 114774226 -34742811 - RLTR12B LTR ERVK -66 293 22 4 1460 225 178 0 0 chr6 114774262 114774307 -34742730 + (TATG)n Simple_repeat Simple_repeat 4 48 0 4 1460 305 333 71 43 chr6 114774382 114774523 -34742514 + B3 SINE B2 63 207 -9 4 1460 1760 156 64 75 chr6 114775157 114775304 -34741733 + MTC LTR MaLR 51 195 -226 4 1460 1675 31 0 5 chr6 114775304 114775498 -34741539 + B2_Mm1a SINE B2 1 193 0 4 1460 1760 156 64 75 chr6 114775498 114775725 -34741312 + MTC LTR MaLR 196 421 0 4 1460 24 53 0 0 chr6 114776153 114776191 -34740846 + AT_rich Low_complexity Low_complexity 1 38 0 4 1460 210 250 50 0 chr6 114776271 114776311 -34740726 - B3 SINE B2 -145 71 30 4 1460 1647 180 90 45 chr6 114776663 114777042 -34739995 - RMER1B Other Other -1 1065 670 4 1460 633 276 124 25 chr6 114777688 114777889 -34739148 + ID_B1 SINE B4 1 221 -3 4 1460 238 370 80 44 chr6 114778183 114778522 -34738515 + HAL1 LINE L1 421 771 -1736 4 1460 267 344 58 0 chr6 114778661 114778902 -34738135 + HAL1 LINE L1 1004 1258 -1249 4 1460 804 177 45 168 chr6 114779030 114779274 -34737763 - B3 SINE B2 0 216 3 4 1460 650 141 163 16 chr6 114779405 114779528 -34737509 + B1_Mus1 SINE Alu 1 141 -7 4 1460 183 42 0 0 chr6 114779709 114779733 -34737304 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 4 1460 279 300 47 57 chr6 114780882 114780899 -34736138 - B4A SINE B4 -101 191 92 4 1460 482 179 12 0 chr6 114780899 114780983 -34736054 - PB1D10 SINE Alu -26 91 7 4 1460 720 319 98 64 chr6 114781406 114781878 -34735159 - Charlie4a DNA MER1_type -1 507 20 4 1460 319 321 90 42 chr6 114781997 114782163 -34734874 - MLT1J LTR MaLR -338 174 1 4 1460 333 0 0 0 chr6 114784028 114784065 -34732972 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1460 185 369 57 16 chr6 114785542 114785666 -34731371 - L4 LINE RTE -1586 443 315 4 1460 974 121 18 12 chr6 114785728 114785895 -34731142 + URR1A DNA MER1_type 59 226 0 4 1460 577 327 76 10 chr6 114786057 114786380 -34730657 + L1MC LINE L1 5402 5737 -2048 4 1460 401 262 119 24 chr6 114786486 114786717 -34730320 + L1MC1 LINE L1 5741 5990 -343 4 1460 1882 161 69 3 chr6 114787784 114788146 -34728891 - MTD LTR MaLR -8 411 26 4 1460 272 133 17 0 chr6 114788370 114788430 -34728607 + (TGG)n Simple_repeat Simple_repeat 1 61 0 4 1460 2123 176 22 3 chr6 114788506 114788871 -34728166 - ORR1D1 LTR MaLR 0 374 3 4 1460 202 333 0 0 chr6 114788890 114788953 -34728084 - MIRc SINE MIR -77 191 129 4 1460 227 345 17 68 chr6 114789304 114789422 -34727615 - MIRm SINE MIR -110 166 55 4 1460 240 274 27 14 chr6 114790727 114790801 -34726236 - MIR SINE MIR -132 130 56 4 1460 208 0 0 59 chr6 114791459 114791493 -34725544 + (CCCCCA)n Simple_repeat Simple_repeat 4 35 0 4 1460 573 273 103 43 chr6 114793207 114793391 -34723646 - B3A SINE B2 -2 196 2 4 1460 1222 68 0 0 chr6 114793931 114794079 -34722958 - B1_Mus1 SINE Alu 0 148 1 4 1460 763 168 197 22 chr6 114794118 114794301 -34722736 - B3 SINE B2 0 216 2 4 1460 629 245 6 75 chr6 114794633 114794792 -34722245 + B1_Mur2 SINE Alu 2 149 0 4 1460 947 113 7 0 chr6 114795149 114795290 -34721747 + B1_Mus1 SINE Alu 7 148 0 4 1460 302 115 19 0 chr6 114795292 114795344 -34721693 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 4 1460 1077 100 0 32 chr6 114795344 114795530 -34721507 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1460 315 302 9 9 chr6 114795550 114795657 -34721380 + BC1_Mm scRNA scRNA 3 109 -43 4 1460 846 128 0 0 chr6 114796929 114797054 -34719983 + B1_Mus2 SINE Alu 12 136 -11 4 1460 481 292 30 70 chr6 114798798 114798997 -34718040 - B3A SINE B2 -7 191 1 4 1460 270 0 0 0 chr6 114800980 114801010 -34716027 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1460 360 0 0 0 chr6 114801010 114801049 -34715988 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1460 258 185 143 92 chr6 114802047 114802166 -34714871 + MLT1A1 LTR MaLR 272 396 -12 4 1460 356 61 0 0 chr6 114802271 114802320 -34714717 - B3 SINE B2 -166 50 2 4 1460 366 23 0 0 chr6 114803794 114803837 -34713200 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1460 2167 138 55 20 chr6 114804333 114804732 -34712305 - MTC LTR MaLR -8 413 1 4 1460 414 309 82 34 chr6 114805941 114806149 -34710888 + MamRep4096 DNA hAT? 74 291 -135 4 1460 547 107 92 62 chr6 114806288 114806418 -34710619 + MTD LTR MaLR 281 414 -5 4 1460 214 319 24 72 chr6 114806525 114806650 -34710387 - PB1 SINE Alu -8 119 1 4 1460 505 265 25 153 chr6 114806650 114806749 -34710288 - B4 SINE B4 -217 75 2 4 1460 418 188 210 17 chr6 114806898 114807017 -34710020 - MTD LTR MaLR -275 144 3 4 1460 466 278 4 7 chr6 114807046 114807176 -34709861 + PB1D7 SINE Alu 1 127 0 4 1460 202 304 18 105 chr6 114807649 114807763 -34709274 + MIRm SINE MIR 87 190 -86 4 1460 261 0 0 0 chr6 114809954 114809983 -34707054 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1460 329 283 93 19 chr6 114813386 114813494 -34703543 - PB1D10 SINE Alu 0 117 2 4 1460 1680 26 0 5 chr6 114815091 114815284 -34701753 - B2_Mm1a SINE B2 0 193 2 4 1460 432 193 56 0 chr6 114817740 114817832 -34699205 - B1_Mus1 SINE Alu -48 100 1 4 1460 219 271 0 48 chr6 114818294 114818356 -34698681 + B4 SINE B4 1 59 -233 4 1460 238 377 39 13 chr6 114818555 114818708 -34698329 + CYRA11_Mm Unknown Y-chromosome 156 312 -305 4 1460 696 176 23 0 chr6 114818582 114818713 -34698324 - URR1A DNA MER1_type -12 214 81 4 1461 656 305 134 24 chr6 114819911 114820203 -34696834 + Charlie23a DNA MER1_type 13 336 -3 4 1461 609 241 56 19 chr6 114821412 114821573 -34695464 + B3 SINE B2 49 215 -1 4 1461 1228 73 94 17 chr6 114821786 114821966 -34695071 + B2_Mm2 SINE B2 2 195 0 4 1461 192 77 0 0 chr6 114822458 114822484 -34694553 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 4 1461 1123 108 0 0 chr6 114822484 114822632 -34694405 - B1_Mus1 SINE Alu 0 148 1 4 1461 305 249 7 10 chr6 114822722 114822798 -34694239 - PB1D10 SINE Alu -35 114 40 4 1461 468 240 21 0 chr6 114823308 114823404 -34693633 - B3A SINE B2 -61 137 40 4 1461 251 319 10 21 chr6 114823428 114823524 -34693513 - L1MB3 LINE L1 -48 6135 6041 4 1461 752 281 38 41 chr6 114823619 114823934 -34693103 - L1MB3 LINE L1 -264 5914 5598 4 1461 201 138 0 0 chr6 114825847 114825876 -34691161 + (GAAAA)n Simple_repeat Simple_repeat 4 32 0 4 1461 333 0 0 0 chr6 114826512 114826549 -34690488 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1461 216 0 0 0 chr6 114826665 114826689 -34690348 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1461 508 248 79 24 chr6 114826712 114826877 -34690160 - B4 SINE B4 -116 176 3 4 1461 383 244 48 27 chr6 114827190 114827338 -34689699 + ID_B1 SINE B4 3 190 -34 4 1461 414 0 0 0 chr6 114827345 114827391 -34689646 + (GGA)n Simple_repeat Simple_repeat 1 46 0 4 1461 238 329 29 0 chr6 114827995 114828065 -34688972 + Tigger5 DNA MER2_type 54 125 -2281 4 1461 282 73 0 0 chr6 114828430 114828471 -34688566 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1461 457 321 85 21 chr6 114829536 114829724 -34687313 - B3 SINE B2 -14 202 3 4 1461 500 118 13 0 chr6 114830145 114830221 -34686816 - B1_Mur2 SINE Alu -49 100 24 4 1461 342 0 0 0 chr6 114830254 114830292 -34686745 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1461 325 231 21 32 chr6 114831185 114831279 -34685758 + MLT1A1 LTR MaLR 303 395 -13 4 1461 673 212 30 8 chr6 114831300 114831433 -34685604 + B1_Mur2 SINE Alu 1 136 -13 4 1461 412 269 124 41 chr6 114831915 114832109 -34684928 - MLT1A LTR MaLR -149 225 16 4 1461 358 254 17 17 chr6 114832342 114832456 -34684581 - PB1D10 SINE Alu -34 115 2 5 1461 292 152 0 0 chr6 114833928 114833974 -34683063 + B4A SINE B4 179 224 -68 5 1461 261 0 0 0 chr6 114833989 114834018 -34683019 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1461 965 133 25 25 chr6 114834019 114834181 -34682856 + MTC LTR MaLR 8 169 -252 5 1461 195 69 0 0 chr6 114835508 114835537 -34681500 + (TATG)n Simple_repeat Simple_repeat 4 32 0 5 1461 1034 86 0 48 chr6 114835542 114835689 -34681348 - B2_Mm2 SINE B2 -55 140 1 5 1461 252 0 0 0 chr6 114835707 114835735 -34681302 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1461 1053 66 7 0 chr6 114836421 114836557 -34680480 + B1_Mus1 SINE Alu 11 147 -1 5 1461 372 293 52 8 chr6 114836854 114836988 -34680049 + MER3 DNA MER1_type 23 162 -47 5 1461 231 207 224 0 chr6 114836998 114837056 -34679981 - ID4 SINE ID -12 71 1 5 1461 277 228 17 34 chr6 114837889 114837948 -34679089 + B4A SINE B4 231 288 -4 5 1461 530 294 0 0 chr6 114838369 114838488 -34678549 + ID_B1 SINE B4 79 197 -27 5 1461 337 132 0 0 chr6 114839503 114839556 -34677481 + B3 SINE B2 3 55 -161 5 1461 227 89 22 0 chr6 114839560 114839605 -34677432 + B3 SINE B2 171 216 0 5 1461 644 218 0 6 chr6 114839640 114839771 -34677266 + GA-rich Low_complexity Low_complexity 1 131 0 5 1461 1176 68 0 0 chr6 114839771 114839918 -34677119 + B1_Mus1 SINE Alu 2 148 0 5 1461 644 218 0 6 chr6 114839918 114839961 -34677076 + polypurine Low_complexity Low_complexity 132 174 0 5 1461 755 186 0 6 chr6 114839957 114840114 -34676923 + GA-rich Low_complexity Low_complexity 2 157 0 5 1461 700 211 180 6 chr6 114841235 114841259 -34675778 - B3A SINE B2 -2 196 173 5 1461 278 50 25 0 chr6 114841259 114841299 -34675738 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1461 700 211 180 6 chr6 114841299 114841441 -34675596 - B3A SINE B2 -26 172 1 5 1461 270 247 134 41 chr6 114843776 114843873 -34673164 - PB1D7 SINE Alu -10 110 5 5 1461 758 249 47 11 chr6 114844871 114845062 -34671975 + B3A SINE B2 1 198 0 5 1461 762 214 5 81 chr6 114845457 114845666 -34671371 - B3A SINE B2 -1 197 5 5 1461 877 174 50 0 chr6 114845713 114845874 -34671163 + RLTR17 LTR ERVK 105 273 -419 5 1461 463 299 186 60 chr6 114845881 114846080 -34670957 - RCHARR1 DNA MER1_type -748 226 3 5 1461 1198 82 0 0 chr6 114846136 114846282 -34670755 - B1_Mus1 SINE Alu 0 148 3 5 1461 201 175 0 0 chr6 114846668 114846708 -34670329 + G-rich Low_complexity Low_complexity 3 42 0 5 1461 726 291 88 21 chr6 114847458 114847788 -34669249 - L1_Rod LINE L1 -15 5832 5481 5 1461 395 179 49 49 chr6 114847788 114847870 -34669167 - RLTR31_Mm LTR ERVK 0 561 480 5 1461 467 206 0 11 chr6 114847865 114847958 -34669079 - RLTR31_Mur LTR ERVK -103 450 359 5 1461 764 287 122 31 chr6 114847979 114848364 -34668673 - L1_Rod LINE L1 -361 5486 5067 5 1461 831 164 12 6 chr6 114848638 114848810 -34668227 + CT-rich Low_complexity Low_complexity 2 174 0 5 1461 261 360 37 0 chr6 114848839 114849003 -34668034 - L1MC4 LINE L1 -541 7501 7332 5 1461 1639 187 51 68 chr6 114849717 114850072 -34666965 + ORR1E LTR MaLR 1 349 -10 5 1461 477 274 21 17 chr6 114850494 114850641 -34666396 + B1F SINE Alu 9 149 0 5 1461 678 230 17 64 chr6 114850760 114850932 -34666105 + RSINE1 SINE B4 2 165 0 5 1461 213 347 128 31 chr6 114850932 114850956 -34666081 + B3 SINE B2 1 215 -1 5 1461 206 98 49 0 chr6 114851885 114851926 -34665111 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 5 1461 247 281 61 20 chr6 114852567 114852665 -34664372 - MIRb SINE MIR -130 138 37 5 1461 364 315 94 67 chr6 114852822 114852858 -34664179 + B4 SINE B4 38 185 -107 5 1461 382 233 26 88 chr6 114852858 114852875 -34664162 + MT2B LTR ERVL 152 161 -440 5 1461 530 217 150 0 chr6 114852875 114852995 -34664042 + B1_Mur2 SINE Alu 1 138 -11 5 1461 535 176 33 50 chr6 114853068 114853188 -34663849 - B3 SINE B2 -95 121 4 5 1461 1123 209 150 37 chr6 114855286 114855580 -34661457 - ORR1D2 LTR MaLR 0 370 44 5 1461 259 200 0 44 chr6 114856484 114856552 -34660485 - PB1D10 SINE Alu -11 106 42 5 1461 302 304 155 0 chr6 114856650 114856818 -34660219 + MER95 LTR ERV 13 206 -225 5 1461 266 260 119 10 chr6 114856855 114856956 -34660081 + MER95 LTR ERV 302 413 -18 5 1461 286 250 0 42 chr6 114856956 114857027 -34660010 + RSINE1 SINE B4 3 70 -95 5 1461 21 0 0 0 chr6 114857064 114857085 -34659952 + AT_rich Low_complexity Low_complexity 1 21 0 5 1461 905 247 186 20 chr6 114857485 114857882 -34659155 - Lx7 LINE L1 -209 7487 7025 5 1461 3754 254 80 25 chr6 114857892 114859015 -34658022 + Lx7 LINE L1 5823 7007 -689 5 1461 297 0 0 0 chr6 114859273 114859306 -34657731 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1461 1626 32 16 0 chr6 114859531 114859721 -34657316 - B2_Mm1a SINE B2 0 193 1 5 1461 235 263 0 0 chr6 114859731 114859788 -34657249 + L2a LINE L2 3334 3390 -36 5 1461 1440 73 0 30 chr6 114860519 114860717 -34656320 + B2_Mm1a SINE B2 2 193 0 5 1461 34 0 0 0 chr6 114861014 114861048 -34655989 + AT_rich Low_complexity Low_complexity 1 34 0 5 1461 299 222 270 10 chr6 114861397 114861497 -34655540 + B3A SINE B2 70 195 -3 5 1461 319 316 150 12 chr6 114861533 114861598 -34655439 + B4A SINE B4 1 72 -220 5 1461 710 205 12 160 chr6 114861598 114861842 -34655195 + B3 SINE B2 3 210 -6 5 1461 319 316 150 12 chr6 114861842 114861949 -34655088 + B4A SINE B4 73 197 -95 5 1461 353 22 22 0 chr6 114862173 114862219 -34654818 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1461 372 286 30 53 chr6 114862229 114862362 -34654675 - B4A SINE B4 -4 288 159 5 1461 225 294 30 80 chr6 114862349 114862449 -34654588 - B3A SINE B2 -101 97 3 5 1461 634 168 0 81 chr6 114862478 114862601 -34654436 - PB1D9 SINE Alu -7 113 1 5 1461 363 181 0 0 chr6 114862884 114862956 -34654081 + GA-rich Low_complexity Low_complexity 2 73 0 5 1461 204 97 0 0 chr6 114863028 114863059 -34653978 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1461 928 273 112 72 chr6 114863520 114863966 -34653071 + MT2A LTR ERVL 1 464 -69 5 1461 258 192 0 0 chr6 114863966 114864018 -34653019 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 5 1461 230 179 17 51 chr6 114864577 114864636 -34652401 + tRNA-Ala-GCA tRNA tRNA 9 65 -10 5 1461 285 29 0 0 chr6 114864789 114864823 -34652214 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1461 26 0 0 0 chr6 114864823 114864849 -34652188 + AT_rich Low_complexity Low_complexity 1 26 0 5 1461 644 199 48 28 chr6 114864863 114865008 -34652029 + B1_Mur1 SINE Alu 1 148 -1 5 1461 970 85 28 21 chr6 114865035 114865180 -34651857 - B1_Mus2 SINE Alu -1 146 1 5 1461 480 269 25 81 chr6 114865315 114865513 -34651524 + B3A SINE B2 8 194 -4 5 1461 239 164 386 35 chr6 114865567 114865681 -34651356 + RSINE1 SINE B4 4 157 -8 5 1461 471 237 85 73 chr6 114865741 114865888 -34651149 + B3A SINE B2 1 152 -46 5 1461 339 25 0 0 chr6 114865888 114865928 -34651109 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1461 471 263 110 86 chr6 114865928 114865990 -34651047 + B3A SINE B2 151 216 0 5 1461 681 207 0 43 chr6 114866524 114866665 -34650372 - RSINE1 SINE B4 -28 137 3 5 1461 387 0 0 0 chr6 114866995 114867038 -34649999 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1461 348 94 0 0 chr6 114867041 114867094 -34649943 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1461 254 333 75 37 chr6 114868097 114868231 -34648806 + MIR3 SINE MIR 48 186 -22 5 1461 219 288 48 36 chr6 114868350 114868433 -34648604 - L2b LINE L2 -44 3331 3248 5 1461 288 0 0 0 chr6 114869328 114869360 -34647677 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1461 591 203 21 63 chr6 114869360 114869502 -34647535 - B1_Mur3 SINE Alu -13 136 1 5 1461 252 86 0 0 chr6 114870036 114870071 -34646966 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1461 195 42 0 0 chr6 114871583 114871607 -34645430 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1461 1198 64 126 11 chr6 114872285 114872459 -34644578 - B2_Mm2 SINE B2 0 195 2 5 1461 1008 79 0 0 chr6 114872598 114872750 -34644287 + (TC)n Simple_repeat Simple_repeat 1 152 0 5 1461 345 24 0 0 chr6 114872750 114872791 -34644246 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1461 642 229 158 0 chr6 114872810 114872993 -34644044 + B3 SINE B2 3 214 -2 5 1461 329 297 15 11 chr6 114873144 114873250 -34643787 + B1F1 SINE Alu 1 109 -11 5 1461 839 173 0 0 chr6 114873489 114873622 -34643415 - B1_Mur2 SINE Alu -13 136 4 5 1461 798 242 10 40 chr6 114873797 114873999 -34643038 - B3A SINE B2 -2 196 1 5 1461 335 275 67 4 chr6 114874023 114874117 -34642920 - PB1D7 SINE Alu -2 125 24 5 1461 3023 39 0 0 chr6 114874117 114874472 -34642565 + L1Md_T LINE L1 6228 6582 0 5 1461 279 281 84 130 chr6 114874472 114874508 -34642529 - PB1 SINE Alu -95 32 1 5 1461 423 0 0 0 chr6 114874662 114874709 -34642328 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1461 975 104 30 0 chr6 114875566 114875700 -34641337 + B1_Mus2 SINE Alu 2 139 -8 5 1461 200 94 31 0 chr6 114875701 114875733 -34641304 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1461 221 237 224 51 chr6 114876106 114876204 -34640833 - RSINE1 SINE B4 -37 128 14 5 1461 1106 202 19 0 chr6 114876902 114877110 -34639927 - B3 SINE B2 0 216 5 5 1461 305 327 0 45 chr6 114877130 114877242 -34639795 + PB1D10 SINE Alu 1 107 -10 5 1461 1083 202 14 18 chr6 114877520 114877737 -34639300 - B3 SINE B2 0 216 1 5 1461 506 257 0 42 chr6 114877988 114878106 -34638931 + RSINE1 SINE B4 2 114 -51 5 1461 352 298 43 9 chr6 114878137 114878252 -34638785 + PB1D7 SINE Alu 1 119 -1 5 1461 375 297 36 62 chr6 114878390 114878415 -34638622 + CYRA11_Mm Unknown Y-chromosome 152 340 -277 5 1461 923 139 30 24 chr6 114878415 114878584 -34638453 - URR1B DNA MER1_type 0 225 56 6 1461 231 197 194 16 chr6 114879777 114879839 -34637198 - ID4_ SINE ID -8 75 3 6 1461 743 143 111 0 chr6 114882541 114882667 -34634370 + B2_Mm2 SINE B2 1 140 -55 6 1461 513 0 0 0 chr6 114882672 114882729 -34634308 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1461 189 74 0 0 chr6 114883184 114883211 -34633826 + (TTAG)n Simple_repeat Simple_repeat 2 28 0 6 1461 1178 187 15 5 chr6 114883235 114883439 -34633598 + B3 SINE B2 2 207 -9 6 1461 1282 41 0 0 chr6 114883445 114883592 -34633445 + B1_Mus1 SINE Alu 2 148 0 6 1461 284 314 29 0 chr6 114883875 114883945 -34633092 - B3A SINE B2 -70 128 57 6 1461 590 295 142 23 chr6 114884466 114884726 -34632311 + B4A SINE B4 1 291 -1 6 1461 370 241 131 78 chr6 114885168 114885321 -34631716 - RSINE1 SINE B4 -2 163 3 6 1461 405 271 31 47 chr6 114885521 114885649 -34631388 + B3A SINE B2 73 198 0 6 1461 589 219 19 82 chr6 114885682 114885841 -34631196 + B1F SINE Alu 1 149 0 6 1461 483 196 50 30 chr6 114885918 114886018 -34631019 - PB1D10 SINE Alu -9 108 7 6 1461 343 254 43 106 chr6 114886107 114886248 -34630789 + B4A SINE B4 13 144 -148 6 1461 330 195 36 83 chr6 114886351 114886435 -34630602 + RSINE1 SINE B4 82 161 -4 6 1461 446 316 74 91 chr6 114887123 114887419 -34629618 - L2 LINE L2 -518 2901 2611 6 1461 1004 216 19 19 chr6 114887469 114887677 -34629360 - B3 SINE B2 -6 210 3 6 1461 323 231 120 11 chr6 114887821 114887913 -34629124 - PB1D10 SINE Alu -17 103 2 6 1461 203 311 35 97 chr6 114888560 114888674 -34628363 - L3 LINE CR1 -3655 834 728 6 1461 214 115 19 19 chr6 114888685 114888738 -34628299 + (TTTG)n Simple_repeat Simple_repeat 1 53 0 6 1461 755 174 14 42 chr6 114888753 114888897 -34628140 - B1_Mur2 SINE Alu 0 149 10 6 1461 189 0 0 0 chr6 114888967 114888988 -34628049 + (GGAAA)n Simple_repeat Simple_repeat 1 21 0 6 1461 240 253 97 65 chr6 114889002 114889095 -34627942 + PB1D9 SINE Alu 19 114 -6 6 1461 252 0 0 0 chr6 114889096 114889124 -34627913 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 6 1461 414 152 0 0 chr6 114889134 114889226 -34627811 + (TG)n Simple_repeat Simple_repeat 2 93 0 6 1461 588 29 0 0 chr6 114889226 114889296 -34627741 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1461 489 230 186 0 chr6 114889332 114889445 -34627592 - RSINE1 SINE B4 -29 136 3 6 1461 437 283 9 9 chr6 114890227 114890341 -34626696 - PB1 SINE Alu -11 116 3 6 1461 1516 150 273 0 chr6 114890741 114891041 -34625996 + RLTR14 LTR ERV1 1 382 0 6 1461 330 212 0 57 chr6 114891897 114891967 -34625070 + RSINE1 SINE B4 75 140 -25 6 1461 348 187 91 26 chr6 114892035 114892112 -34624925 + ID4_ SINE ID 2 83 0 6 1461 811 160 22 22 chr6 114892153 114892287 -34624750 + B1_Mur2 SINE Alu 5 138 -11 6 1461 21 89 0 0 chr6 114892296 114892352 -34624685 + AT_rich Low_complexity Low_complexity 1 56 0 6 1461 262 279 126 0 chr6 114893011 114893122 -34623915 - Lx8 LINE L1 -228 7245 7121 6 1461 534 270 185 21 chr6 114893408 114893646 -34623391 - MER2 DNA MER2_type -11 334 58 6 1461 1464 43 11 21 chr6 114893663 114893853 -34623184 - B2_Mm2 SINE B2 -7 188 1 6 1461 814 222 126 5 chr6 114893912 114894102 -34622935 - B3 SINE B2 0 216 4 6 1461 252 241 0 0 chr6 114894205 114894259 -34622778 - Lx8 LINE L1 -150 7323 7270 6 1461 264 200 46 0 chr6 114894434 114894499 -34622538 + ID2 SINE ID 2 69 -14 6 1461 209 115 98 0 chr6 114894907 114894968 -34622069 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1461 681 133 1 26 chr6 114895445 114895576 -34621461 + PB1D9 SINE Alu 14 137 -12 6 1461 799 157 15 2 chr6 114895773 114895919 -34621118 - B1_Mur3 SINE Alu 0 149 4 6 1461 335 292 49 93 chr6 114895775 114895937 -34621100 - B4 SINE B4 -69 223 69 6 1461 488 272 26 0 chr6 114895945 114896059 -34620978 - B1F SINE Alu -6 143 27 6 1461 534 70 0 0 chr6 114896262 114896333 -34620704 + (GAAA)n Simple_repeat Simple_repeat 3 73 0 6 1461 444 19 0 0 chr6 114896333 114896386 -34620651 + (CAAGA)n Simple_repeat Simple_repeat 3 55 0 6 1461 695 195 34 87 chr6 114896499 114896707 -34620330 + B3A SINE B2 2 198 0 6 1461 371 294 0 0 chr6 114896732 114896817 -34620220 + ID_B1 SINE B4 6 90 -134 6 1461 771 244 12 6 chr6 114896839 114897000 -34620037 + B3 SINE B2 49 210 -6 6 1461 490 247 0 0 chr6 114897035 114897132 -34619905 + ID_B1 SINE B4 127 223 -1 6 1461 237 120 17 138 chr6 114897292 114897350 -34619687 - 4.5SRNA scRNA scRNA -7 87 37 6 1461 262 138 0 97 chr6 114897350 114897422 -34619615 + (TCTCTG)n Simple_repeat Simple_repeat 3 67 0 6 1461 440 107 0 96 chr6 114897422 114897619 -34619418 + CT-rich Low_complexity Low_complexity 3 180 0 6 1461 649 87 0 138 chr6 114897619 114897807 -34619230 + (TCTCTG)n Simple_repeat Simple_repeat 3 164 0 6 1461 241 374 12 0 chr6 114898087 114898170 -34618867 - ID SINE ID -138 86 3 6 1461 460 143 13 0 chr6 114898439 114898516 -34618521 + B1_Mur1 SINE Alu 67 144 -5 6 1461 345 47 0 0 chr6 114898851 114898894 -34618143 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 6 1461 21 82 0 0 chr6 114898894 114898943 -34618094 + AT_rich Low_complexity Low_complexity 1 49 0 6 1461 302 309 53 35 chr6 114899418 114899532 -34617505 + PB1D10 SINE Alu 1 116 -1 6 1461 279 180 115 0 chr6 114899571 114899632 -34617405 + PB1D10 SINE Alu 44 111 -6 6 1461 414 281 0 22 chr6 114899637 114899728 -34617309 + B3A SINE B2 2 90 -108 6 1461 850 85 12 35 chr6 114900432 114900602 -34616435 + (TTC)n Simple_repeat Simple_repeat 2 167 0 6 1461 549 208 44 144 chr6 114900608 114900788 -34616249 + RSINE1 SINE B4 2 163 -2 6 1461 304 243 0 12 chr6 114900815 114900986 -34616051 + (CA)n Simple_repeat Simple_repeat 1 169 0 6 1461 542 216 102 22 chr6 114901134 114901271 -34615766 + B1_Mur1 SINE Alu 2 149 0 6 1461 230 267 53 0 chr6 114901297 114901372 -34615665 + ID4 SINE ID 1 79 -4 6 1461 429 20 0 0 chr6 114901378 114901428 -34615609 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 6 1461 180 0 0 0 chr6 114901653 114901673 -34615364 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6 1461 1209 176 54 0 chr6 114901992 114902197 -34614840 + B3 SINE B2 1 216 0 6 1461 733 268 100 23 chr6 114902399 114902659 -34614378 - LTR82A LTR ERVL -561 311 32 6 1461 749 161 0 0 chr6 114902825 114902943 -34614094 - ID_B1 SINE B4 0 224 107 6 1461 381 58 0 0 chr6 114902986 114903038 -34613999 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1461 928 136 7 13 chr6 114904174 114904323 -34612714 - B1_Mur2 SINE Alu 0 149 2 6 1461 21 0 0 0 chr6 114904351 114904372 -34612665 + AT_rich Low_complexity Low_complexity 1 21 0 6 1461 577 300 24 36 chr6 114904594 114904618 -34612419 + RSINE1 SINE B4 2 25 -140 6 1461 1594 196 84 14 chr6 114904618 114904964 -34612073 + ORR1D2 LTR MaLR 1 370 0 6 1461 577 300 24 36 chr6 114904964 114905105 -34611932 + RSINE1 SINE B4 26 165 0 6 1461 22 0 0 0 chr6 114905213 114905235 -34611802 + AT_rich Low_complexity Low_complexity 1 22 0 6 1461 212 257 97 28 chr6 114906067 114906139 -34610898 + ID4_ SINE ID 1 77 -6 6 1461 1282 125 0 0 chr6 114906750 114906934 -34610103 + URR1B DNA MER1_type 42 225 0 6 1461 454 206 62 3 chr6 114907532 114907648 -34609389 + B1_Mur1 SINE Alu 4 143 -6 6 1461 249 225 0 92 chr6 114907721 114907790 -34609247 + ID4 SINE ID 11 73 -79 6 1461 233 276 17 0 chr6 114908132 114908190 -34608847 + ID4_ SINE ID 25 83 0 6 1461 482 169 0 0 chr6 114909395 114909466 -34607571 + B3A SINE B2 10 80 -118 6 1461 537 232 109 23 chr6 114909507 114909635 -34607402 - RSINE1 SINE B4 -24 141 3 6 1461 523 258 133 36 chr6 114910068 114910233 -34606804 + B3A SINE B2 2 182 -16 6 1461 1222 42 14 0 chr6 114911200 114911344 -34605693 + B1_Mus2 SINE Alu 2 147 0 6 1461 654 269 90 167 chr6 114912328 114912526 -34604511 + ORR1E LTR MaLR 1 203 -156 6 1461 1246 41 7 0 chr6 114912526 114912672 -34604365 + B1_Mus1 SINE Alu 2 148 0 6 1461 654 269 90 167 chr6 114912672 114912862 -34604175 + ORR1E LTR MaLR 204 359 0 6 1461 210 244 0 0 chr6 114912883 114912924 -34604113 + B1_Mus2 SINE Alu 3 43 -104 6 1461 614 237 73 120 chr6 114913019 114913211 -34603826 - B4A SINE B4 -2 290 108 6 1461 311 275 12 0 chr6 114914083 114914163 -34602874 - ID4 SINE ID -1 82 2 6 1461 382 105 0 0 chr6 114914481 114914538 -34602499 + B3A SINE B2 86 142 -56 6 1461 805 319 87 61 chr6 114914628 114914680 -34602357 + MER82 DNA MER2_type 2 53 -600 6 1461 646 252 91 0 chr6 114914680 114914878 -34602159 + B3 SINE B2 1 216 0 6 1461 805 319 87 61 chr6 114914878 114915332 -34601705 + MER82 DNA MER2_type 54 520 -133 6 1461 455 217 144 23 chr6 114915787 114915919 -34601118 - B1F1 SINE Alu -1 148 1 6 1461 207 0 0 0 chr6 114916143 114916166 -34600871 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1461 588 259 54 0 chr6 114916211 114916358 -34600679 - B3 SINE B2 -61 155 1 6 1461 387 237 41 10 chr6 114916358 114916451 -34600586 - B4A SINE B4 -196 96 1 6 1461 270 0 0 0 chr6 114916901 114916931 -34600106 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 1461 1128 174 25 0 chr6 114916939 114917135 -34599902 + B3 SINE B2 10 210 -6 6 1461 378 0 0 0 chr6 114917422 114917464 -34599573 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1461 574 169 220 0 chr6 114917521 114917639 -34599398 + B1_Mm SINE Alu 3 146 -1 6 1461 765 158 90 0 chr6 114918134 114918267 -34598770 + B1_Mur1 SINE Alu 5 149 0 7 1461 31 0 0 0 chr6 114918267 114918298 -34598739 + AT_rich Low_complexity Low_complexity 1 31 0 7 1461 28 0 0 0 chr6 114918890 114918918 -34598119 + GC_rich Low_complexity Low_complexity 1 28 0 7 1461 831 37 0 0 chr6 114920347 114920454 -34596583 + (GA)n Simple_repeat Simple_repeat 2 108 0 7 1461 726 179 80 99 chr6 114920454 114920725 -34596312 + MTD LTR MaLR 60 405 -14 7 1461 648 206 136 7 chr6 114921045 114921192 -34595845 + B3A SINE B2 27 192 -6 7 1461 423 0 0 0 chr6 114921247 114921294 -34595743 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1461 323 290 43 0 chr6 114921294 114921387 -34595650 - RSINE1 SINE B4 -48 117 21 7 1461 747 178 70 0 chr6 114921446 114921575 -34595462 + B1_Mus1 SINE Alu 1 138 -10 7 1461 189 250 20 20 chr6 114921857 114921906 -34595131 - MIRc SINE MIR -43 225 177 7 1461 373 315 18 18 chr6 114922439 114922549 -34594488 + PB1 SINE Alu 1 110 -17 7 1461 529 246 133 11 chr6 114922626 114922807 -34594230 - B3 SINE B2 -13 203 1 7 1461 420 214 119 30 chr6 114922826 114922927 -34594110 - B1_Mus2 SINE Alu -6 114 5 7 1461 254 287 20 60 chr6 114922841 114922941 -34594096 - B4A SINE B4 -119 173 78 7 1461 1072 207 49 10 chr6 114923239 114923444 -34593593 + B3 SINE B2 1 213 -3 7 1461 509 212 0 10 chr6 114923586 114923686 -34593351 + ID_B1 SINE B4 113 211 -13 7 1461 468 0 0 0 chr6 114923687 114923739 -34593298 + (GA)n Simple_repeat Simple_repeat 2 53 0 7 1461 234 247 111 100 chr6 114923763 114923853 -34593184 - Tigger9a DNA Tigger -495 237 147 7 1461 566 185 87 16 chr6 114923946 114924072 -34592965 - B3 SINE B2 -79 137 3 7 1461 931 126 0 27 chr6 114924313 114924460 -34592577 - B1_Mur3 SINE Alu -2 147 5 7 1461 499 247 100 27 chr6 114924657 114924807 -34592230 + RSINE1 SINE B4 3 163 -2 7 1461 628 210 21 40 chr6 114924953 114925154 -34591883 + B3 SINE B2 1 195 0 7 1461 762 156 69 15 chr6 114925353 114925483 -34591554 + B1_Mur3 SINE Alu 3 139 -10 7 1461 637 306 113 34 chr6 114925590 114925918 -34591119 + MLT1A LTR MaLR 21 374 0 7 1461 332 275 48 135 chr6 114926289 114926415 -34590622 - PB1D10 SINE Alu -1 116 2 7 1461 859 143 7 60 chr6 114926446 114926595 -34590442 + B1_Mm SINE Alu 1 141 -6 7 1461 231 324 111 0 chr6 114926940 114927048 -34589989 + MIRm SINE MIR 157 276 0 7 1461 294 29 0 0 chr6 114927359 114927394 -34589643 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1461 443 278 160 44 chr6 114927529 114927710 -34589327 - MLT1A1 LTR MaLR -75 333 132 7 1461 1505 223 63 18 chr6 114927740 114928099 -34588938 - MTE2a LTR MaLR -4 366 1 7 1461 228 287 124 22 chr6 114928127 114928216 -34588821 - MLT1A1 LTR MaLR -267 98 1 7 1461 427 116 58 0 chr6 114928221 114928307 -34588730 + (TATATG)n Simple_repeat Simple_repeat 6 96 0 7 1461 632 177 35 0 chr6 114928426 114928539 -34588498 - PB1D9 SINE Alu -1 119 3 7 1461 593 294 54 37 chr6 114928568 114928865 -34588172 - L1MD2 LINE L1 -365 5994 5693 7 1461 1091 236 201 3 chr6 114928870 114929155 -34587882 + MTEa LTR MaLR 1 342 -37 7 1461 951 212 0 62 chr6 114929171 114929382 -34587655 + B3A SINE B2 1 198 0 7 1461 325 132 0 19 chr6 114929494 114929548 -34587489 + HAL1-3A_ME LINE L1 1975 2027 -831 7 1461 250 264 125 106 chr6 114929574 114929782 -34587255 - ORR1E LTR MaLR -4 370 159 7 1461 725 253 81 81 chr6 114929816 114930087 -34586950 + B4A SINE B4 4 274 -18 7 1461 327 49 0 0 chr6 114930121 114930162 -34586875 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1461 341 343 29 14 chr6 114930170 114930309 -34586728 - ORR1E LTR MaLR -217 142 2 7 1461 287 181 181 0 chr6 114930309 114930381 -34586656 + PB1D10 SINE Alu 3 87 -30 7 1461 185 224 17 0 chr6 114930592 114930650 -34586387 + CT-rich Low_complexity Low_complexity 1 59 0 7 1461 603 235 14 22 chr6 114931176 114931315 -34585722 + ID_B1 SINE B4 86 223 -1 7 1461 426 69 0 0 chr6 114931334 114931392 -34585645 + (GGGGA)n Simple_repeat Simple_repeat 4 61 0 7 1461 557 259 9 0 chr6 114931518 114931626 -34585411 + RSINE1 SINE B4 16 124 -41 7 1461 459 0 0 0 chr6 114931626 114931677 -34585360 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1461 247 283 80 54 chr6 114931702 114931814 -34585223 - MLT1A1 LTR MaLR -49 359 245 7 1461 395 283 41 16 chr6 114932122 114932244 -34584793 - MIRb SINE MIR -77 191 67 7 1461 2002 219 20 8 chr6 114932656 114933056 -34583981 - MTD LTR MaLR -14 405 1 7 1461 375 83 0 0 chr6 114933774 114933834 -34583203 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1461 641 244 85 2 chr6 114933834 114933983 -34583054 - B3A SINE B2 -39 156 1 7 1461 189 0 0 0 chr6 114933999 114934020 -34583017 + (TAG)n Simple_repeat Simple_repeat 2 22 0 7 1461 26 0 0 0 chr6 114934783 114934809 -34582228 + AT_rich Low_complexity Low_complexity 1 26 0 7 1461 466 196 12 37 chr6 114934811 114934975 -34582062 + (TATATG)n Simple_repeat Simple_repeat 6 165 0 7 1461 333 187 0 0 chr6 114935330 114935405 -34581632 + (CA)n Simple_repeat Simple_repeat 1 75 0 7 1461 660 181 70 8 chr6 114935437 114935565 -34581472 + B1_Mus1 SINE Alu 3 138 -10 7 1461 289 390 36 27 chr6 114935970 114936194 -34580843 - MIRb SINE MIR -8 260 35 7 1461 297 0 0 0 chr6 114936230 114936263 -34580774 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1461 248 93 0 44 chr6 114936322 114936367 -34580670 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 7 1461 709 240 34 97 chr6 114936574 114936749 -34580288 + RSINE1 SINE B4 2 165 0 7 1461 327 136 0 0 chr6 114936757 114936816 -34580221 + (TATG)n Simple_repeat Simple_repeat 2 60 0 7 1461 250 253 23 92 chr6 114936832 114936919 -34580118 + PB1 SINE Alu 10 90 -37 7 1461 742 216 7 13 chr6 114937471 114937621 -34579416 - B1_Mur2 SINE Alu 0 149 1 7 1461 250 429 19 0 chr6 114937678 114937783 -34579254 - ID_B1 SINE B4 -62 162 56 7 1461 510 220 42 8 chr6 114938026 114938145 -34578892 + Charlie19a DNA Charlie 112 234 -152 7 1461 704 231 78 64 chr6 114939353 114939635 -34577402 + B4A SINE B4 3 288 -4 7 1461 283 244 30 100 chr6 114939753 114939853 -34577184 + Charlie22a DNA MER1_type 260 352 -139 7 1461 264 287 33 44 chr6 114940308 114940399 -34576638 - MLT1A0 LTR MaLR 0 365 276 7 1461 846 203 47 31 chr6 114940490 114940683 -34576354 - B3A SINE B2 -1 197 2 7 1461 246 311 40 0 chr6 114940683 114940755 -34576282 - MLT1A0 LTR MaLR -286 88 14 7 1461 218 262 12 0 chr6 114941034 114941114 -34575923 + T-rich Low_complexity Low_complexity 4 84 0 7 1461 249 299 36 36 chr6 114941114 114941225 -34575812 + RMER12 LTR ERVK 748 858 -464 7 1461 737 232 74 44 chr6 114941199 114941384 -34575653 - B4A SINE B4 0 292 100 7 1461 864 197 0 26 chr6 114941384 114941535 -34575502 - B1_Mur1 SINE Alu -1 148 2 7 1461 737 232 74 44 chr6 114941535 114941620 -34575417 - B4A SINE B4 -193 99 14 7 1461 780 114 0 0 chr6 114941838 114941969 -34575068 + (TC)n Simple_repeat Simple_repeat 2 132 0 7 1461 249 33 0 0 chr6 114941969 114941998 -34575039 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1461 201 268 85 85 chr6 114942114 114942208 -34574829 - MIRc SINE MIR -127 141 48 7 1461 216 386 45 13 chr6 114942433 114942588 -34574449 - MIRb SINE MIR -78 190 31 7 1461 495 300 105 69 chr6 114942820 114943124 -34573913 + MER2 DNA MER2_type 26 340 -5 7 1461 190 253 103 46 chr6 114943135 114943222 -34573815 - MIRc SINE MIR -125 143 52 7 1461 570 168 217 8 chr6 114943331 114943451 -34573586 - B1_Mus2 SINE Alu -1 146 2 7 1461 284 274 202 0 chr6 114943972 114944096 -34572941 - MTD LTR MaLR -88 331 183 7 1461 265 324 152 43 chr6 114944244 114944428 -34572609 + LTR16A1 LTR ERVL 52 255 -196 7 1461 271 287 189 53 chr6 114944934 114945199 -34571838 + LTR84b LTR ERVL 75 375 -386 7 1461 892 130 86 7 chr6 114945400 114945539 -34571498 + B1_Mur4 SINE Alu 1 150 0 7 1461 447 261 137 8 chr6 114945588 114945719 -34571318 + RSINE1 SINE B4 17 164 -1 7 1461 189 0 0 0 chr6 114945779 114945800 -34571237 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1461 357 239 186 16 chr6 114945904 114946036 -34571001 - B4 SINE B4 -78 214 55 7 1461 189 0 0 0 chr6 114946036 114946057 -34570980 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 7 1461 995 223 43 50 chr6 114946057 114946336 -34570701 - B4A SINE B4 -11 281 5 7 1461 629 293 66 4 chr6 114946974 114947200 -34569837 + MIR SINE MIR 20 259 -3 7 1461 676 182 65 14 chr6 114947371 114947510 -34569527 - B1_Mus2 SINE Alu -1 146 1 7 1461 878 210 22 11 chr6 114948839 114949022 -34568015 - B3 SINE B2 -30 186 2 7 1461 232 299 44 15 chr6 114949068 114949136 -34567901 - B4A SINE B4 -6 286 217 7 1461 485 209 289 7 chr6 114949159 114949308 -34567729 + B3A SINE B2 2 192 -6 7 1461 1364 82 38 0 chr6 114949313 114949496 -34567541 + B2_Mm2 SINE B2 2 191 -4 7 1461 549 210 31 0 chr6 114949508 114949634 -34567403 - B3 SINE B2 -10 188 52 7 1462 295 270 130 13 chr6 114950502 114950656 -34566381 + LTR33A_ LTR ERVL 11 182 -349 7 1462 518 295 56 7 chr6 114950913 114951075 -34565962 - MLT1F1 LTR MaLR -330 265 54 7 1462 21 0 0 0 chr6 114951085 114951106 -34565931 + AT_rich Low_complexity Low_complexity 1 21 0 7 1462 287 296 143 55 chr6 114951393 114951575 -34565462 - MIRb SINE MIR -5 257 60 7 1462 224 281 59 21 chr6 114952172 114952278 -34564759 - MIRc SINE MIR -17 191 81 7 1462 1762 218 94 0 chr6 114952278 114952659 -34564378 + MTD LTR MaLR 3 419 0 8 1462 361 43 0 0 chr6 114953064 114953110 -34563927 + U3 snRNA snRNA 1 46 -171 8 1462 243 230 27 0 chr6 114953848 114953922 -34563115 + A-rich Low_complexity Low_complexity 5 80 0 8 1462 656 167 17 9 chr6 114954203 114954318 -34562719 + PB1D9 SINE Alu 1 116 -4 8 1462 259 298 63 82 chr6 114954910 114955106 -34561931 + L2c LINE L2 3170 3379 -8 8 1462 231 286 0 51 chr6 114956000 114956059 -34560978 + 5S rRNA rRNA 1 56 -65 8 1462 224 341 59 0 chr6 114956563 114956648 -34560389 + B1_Mus2 SINE Alu 2 91 -56 8 1462 571 164 0 24 chr6 114956665 114956790 -34560247 + GA-rich Low_complexity Low_complexity 2 123 0 8 1462 271 206 206 0 chr6 114958486 114958559 -34558478 + PB1D10 SINE Alu 28 115 -2 8 1462 744 275 56 14 chr6 114958562 114958776 -34558261 + ID_B1 SINE B4 2 224 0 8 1462 404 252 47 8 chr6 114958872 114959000 -34558037 - L1MC5 LINE L1 -184 7777 7645 8 1462 229 289 33 11 chr6 114959947 114960038 -34556999 + HAL1 LINE L1 1469 1561 -946 8 1462 219 292 0 0 chr6 114960039 114960087 -34556950 + C-rich Low_complexity Low_complexity 4 51 0 8 1462 687 230 0 36 chr6 114961576 114961716 -34555321 - B1F1 SINE Alu -6 143 9 8 1462 930 182 99 0 chr6 114962651 114962843 -34554194 - B3 SINE B2 -5 211 1 8 1462 215 303 66 22 chr6 114963460 114963551 -34553486 + RSINE1 SINE B4 45 139 -26 8 1462 367 149 2 0 chr6 114963547 114963609 -34553428 + B1_Mur1 SINE Alu 60 122 -27 8 1462 616 270 125 55 chr6 114963991 114964320 -34552717 + MLT2D LTR ERVL 52 403 -11 8 1462 872 163 0 26 chr6 114964588 114964739 -34552298 + B1_Mus2 SINE Alu 1 147 0 8 1462 749 200 38 13 chr6 114964930 114965087 -34551950 - RSINE1 SINE B4 -2 163 3 8 1462 246 214 105 77 chr6 114965159 114965317 -34551720 + Lx6 LINE L1 5587 5745 -1715 8 1462 395 261 166 12 chr6 114965337 114965500 -34551537 + ID_B1 SINE B4 36 223 -1 8 1462 374 302 8 23 chr6 114965840 114965969 -34551068 + ID_B1 SINE B4 94 220 -4 8 1462 1233 61 0 0 chr6 114966358 114966505 -34550532 + B1_Mm SINE Alu 1 147 0 8 1462 588 203 117 29 chr6 114966732 114966869 -34550168 + B3 SINE B2 60 208 -8 8 1462 188 88 0 56 chr6 114967803 114967839 -34549198 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1462 1252 41 0 0 chr6 114967979 114968126 -34548911 - B1_Mus2 SINE Alu 0 147 1 8 1462 268 198 10 70 chr6 114968733 114968802 -34548235 + PB1D10 SINE Alu 46 109 -11 8 1462 240 35 0 0 chr6 114968802 114968831 -34548206 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1462 1046 179 75 15 chr6 114968844 114969043 -34547994 + MTC LTR MaLR 1 211 -210 8 1462 1534 52 5 16 chr6 114969043 114969237 -34547800 + B2_Mm1a SINE B2 1 192 -1 8 1462 246 128 0 0 chr6 114969269 114969308 -34547729 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 8 1462 213 121 0 0 chr6 114969342 114969375 -34547662 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1462 1208 142 68 10 chr6 114969377 114969583 -34547454 + MTC LTR MaLR 196 413 -8 8 1462 223 366 53 9 chr6 114970137 114970250 -34546787 - ID_B1 SINE B4 -103 121 4 8 1462 530 260 145 25 chr6 114970362 114970638 -34546399 - L1M4 LINE L1 -401 5777 5469 8 1462 356 61 200 57 chr6 114970822 114970892 -34546145 - B1_Mur3 SINE Alu -1 148 69 8 1462 234 218 179 0 chr6 114970831 114970909 -34546128 - ID_B1 SINE B4 -6 218 127 8 1462 303 49 0 0 chr6 114971199 114971240 -34545797 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 8 1462 216 0 0 0 chr6 114971410 114971434 -34545603 + (TGG)n Simple_repeat Simple_repeat 1 24 0 8 1462 278 180 20 0 chr6 114972292 114972342 -34544695 + MIRc SINE MIR 109 159 -109 8 1462 533 254 168 13 chr6 114972486 114972665 -34544372 - B3A SINE B2 -6 192 2 8 1462 254 246 85 116 chr6 114973338 114973467 -34543570 + B1_Mus2 SINE Alu 14 138 -9 8 1462 303 229 0 0 chr6 114973493 114973554 -34543483 + tRNA-Ala-GCY_ tRNA tRNA 6 66 -9 8 1462 232 340 0 48 chr6 114973496 114973601 -34543436 + BC1_Mm scRNA scRNA 15 114 -38 8 1462 189 147 0 0 chr6 114973602 114973636 -34543401 + (GGA)n Simple_repeat Simple_repeat 1 34 0 8 1462 299 291 13 0 chr6 114974179 114974258 -34542779 - ID4 SINE ID -2 81 2 8 1462 278 308 97 21 chr6 114974286 114974379 -34542658 - RSINE1 SINE B4 -8 157 58 8 1462 237 322 67 0 chr6 114975091 114975181 -34541856 + MER5A DNA MER1_type 4 99 -90 8 1462 1091 51 73 0 chr6 114975683 114975820 -34541217 - B1_Mus1 SINE Alu 0 148 2 8 1462 1050 128 106 11 chr6 114975842 114976031 -34541006 - B3 SINE B2 -8 208 2 8 1462 675 199 23 8 chr6 114976607 114976739 -34540298 - B1_Mur2 SINE Alu -15 134 1 8 1462 368 274 52 10 chr6 114976747 114976843 -34540194 - PB1D7 SINE Alu -10 110 11 8 1462 509 208 199 8 chr6 114977275 114977406 -34539631 - RSINE1 SINE B4 -6 159 4 8 1462 180 203 31 78 chr6 114978447 114978511 -34538526 - MIRc SINE MIR -194 74 14 8 1462 310 198 47 58 chr6 114978560 114978646 -34538391 + L1MB7 LINE L1 6096 6180 -4 8 1462 561 246 60 0 chr6 114978661 114978795 -34538242 - B1_Mur1 SINE Alu -7 142 1 8 1462 261 0 0 0 chr6 114978903 114978932 -34538105 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1462 287 25 25 0 chr6 114978932 114978971 -34538066 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 1462 617 165 35 9 chr6 114979075 114979191 -34537846 - PB1D9 SINE Alu 0 120 2 8 1462 408 304 41 57 chr6 114979604 114979795 -34537242 - B3 SINE B2 0 216 35 8 1462 2951 49 0 9 chr6 114979826 114980175 -34536862 + ORR1A1 LTR MaLR 1 346 0 8 1462 775 171 228 6 chr6 114980240 114980411 -34536626 + B3 SINE B2 4 212 -4 8 1462 270 269 69 69 chr6 114980717 114980833 -34536204 - MIRc SINE MIR -83 185 70 8 1462 212 277 15 0 chr6 114981299 114981364 -34535673 + ID4 SINE ID 8 73 -10 8 1462 1041 207 15 5 chr6 114981503 114981702 -34535335 - B3 SINE B2 -11 205 5 8 1462 495 276 82 105 chr6 114981738 114982005 -34535032 - MER21B LTR ERV1 -602 261 1 8 1462 228 303 153 13 chr6 114982066 114982223 -34534814 + LTR84a LTR ERVL 576 754 -3 8 1462 870 187 48 16 chr6 114982491 114982666 -34534371 + B1_Mur4 SINE Alu 3 310 -1 8 1462 191 36 0 35 chr6 114982673 114982702 -34534335 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1462 617 268 44 6 chr6 114982923 114983081 -34533956 + RSINE1 SINE B4 2 165 0 8 1462 212 361 19 58 chr6 114983226 114983329 -34533708 + PB1 SINE Alu 1 99 -28 8 1462 196 283 19 0 chr6 114983778 114983831 -34533206 + MIR SINE MIR 77 130 -78 8 1462 944 140 7 7 chr6 114983886 114984030 -34533007 + B1_Mus2 SINE Alu 3 146 -1 8 1462 533 269 20 20 chr6 114984124 114984276 -34532761 + MER5A1 DNA MER1_type 1 152 -14 8 1462 358 347 59 16 chr6 114985331 114985532 -34531505 - MIR SINE MIR 0 268 54 8 1462 572 293 50 6 chr6 114985541 114985723 -34531314 + B3A SINE B2 7 196 -2 8 1462 800 229 66 16 chr6 114986396 114986578 -34530459 - B4 SINE B4 -16 276 86 8 1462 228 315 157 7 chr6 114986954 114987101 -34529936 + MER5B DNA MER1_type 5 173 -5 8 1462 549 276 14 20 chr6 114987233 114987381 -34529656 + RSINE1 SINE B4 4 150 -15 8 1462 532 77 13 0 chr6 114988116 114988194 -34528843 - B1_Mur4 SINE Alu -1 149 71 8 1462 617 205 57 0 chr6 114988197 114988319 -34528718 - B1_Mur2 SINE Alu -10 139 11 8 1462 3447 40 2 0 chr6 114988584 114988979 -34528058 - MTA_Mm LTR MaLR 0 396 1 8 1462 6953 72 20 168 chr6 114988979 114990268 -34526769 - MTA_Mm-int LTR MaLR 0 1098 1 8 1462 3379 38 5 2 chr6 114990268 114990663 -34526374 - MTA_Mm LTR MaLR 0 396 1 8 1462 336 289 96 9 chr6 114990867 114990982 -34526055 + B1F SINE Alu 22 146 -3 8 1462 624 277 22 28 chr6 114991032 114991059 -34525978 + B3A SINE B2 2 27 -171 8 1462 358 208 13 13 chr6 114991059 114991137 -34525900 + ID4 SINE ID 2 79 -4 8 1462 922 183 10 6 chr6 114991137 114991323 -34525714 + B3 SINE B2 28 211 -5 8 1462 253 0 0 51 chr6 114991367 114991406 -34525631 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 8 1462 1068 92 7 0 chr6 114991408 114991549 -34525488 - B1_Mus1 SINE Alu -6 142 1 8 1462 491 252 89 75 chr6 114991589 114991803 -34525234 + B4 SINE B4 1 217 -75 8 1462 999 25 0 0 chr6 114991882 114992000 -34525037 + (GGGAGA)n Simple_repeat Simple_repeat 4 121 0 8 1462 283 357 0 30 chr6 114993346 114993447 -34523590 - RSINE1 SINE B4 0 165 68 8 1462 471 304 31 31 chr6 114993530 114993693 -34523344 + RSINE1 SINE B4 1 163 -2 8 1462 369 0 0 0 chr6 114993695 114993736 -34523301 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1462 203 61 30 0 chr6 114994462 114994495 -34522542 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8 1462 1088 55 7 40 chr6 114994495 114994645 -34522392 - B1_Mus1 SINE Alu -3 145 1 8 1462 288 0 0 0 chr6 114994719 114994751 -34522286 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1462 861 200 97 0 chr6 114994862 114995027 -34522010 - B3A SINE B2 -16 182 2 8 1462 182 37 37 0 chr6 114995443 114995470 -34521567 + (TTG)n Simple_repeat Simple_repeat 3 30 0 8 1462 269 333 34 17 chr6 114995918 114996037 -34521000 + MER103 DNA DNA 3 123 -43 8 1462 249 368 0 0 chr6 114996838 114996914 -34520123 + MER21B LTR ERV1 21 96 -767 8 1462 496 271 39 39 chr6 114996975 114997102 -34519935 + B4A SINE B4 162 288 -4 8 1462 348 43 0 0 chr6 114997154 114997200 -34519837 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1462 369 355 124 28 chr6 114997249 114997387 -34519650 + MER21B LTR ERV1 132 272 -591 8 1462 738 183 233 6 chr6 114997387 114997563 -34519474 + B3 SINE B2 1 216 0 9 1462 369 355 124 28 chr6 114997563 114997673 -34519364 + MER21B LTR ERV1 273 403 -460 8 1462 387 289 101 70 chr6 114997767 114998083 -34518954 - L1MCa LINE L1 -5345 1406 1081 9 1462 198 0 0 0 chr6 114998135 114998157 -34518880 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1462 594 0 0 0 chr6 114998158 114998224 -34518813 + (GA)n Simple_repeat Simple_repeat 2 67 0 9 1462 393 264 113 96 chr6 114998268 114998498 -34518539 - B4 SINE B4 -57 235 2 9 1462 263 234 26 13 chr6 114998510 114998588 -34518449 - L1MCa LINE L1 -5066 979 901 9 1462 324 0 0 0 chr6 114998594 114998630 -34518407 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 9 1462 1155 89 6 11 chr6 114998630 114998811 -34518226 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 1462 563 223 19 0 chr6 114998812 114998915 -34518122 - B1_Mur2 SINE Alu -11 138 34 9 1462 260 343 35 23 chr6 114999448 114999621 -34517416 - L1MCa LINE L1 -5747 298 124 9 1462 373 277 22 0 chr6 114999863 115000000 -34517037 - L1MD LINE L1 -1822 4324 4185 9 1462 1203 116 26 21 chr6 115000014 115000207 -34516830 - B2_Mm2 SINE B2 0 195 2 1 1462 422 36 18 0 chr6 115000340 115000396 -34516641 + (TTA)n Simple_repeat Simple_repeat 1 57 0 2 1462 319 229 118 107 chr6 115000467 115000678 -34516359 - L1MEf LINE L1 -4546 2087 1866 3 1462 394 265 79 22 chr6 115001629 115001768 -34515269 + MER5A DNA MER1_type 1 147 -42 4 1462 617 286 122 36 chr6 115002457 115002794 -34514243 - L1MB3 LINE L1 0 6183 5818 5 1462 619 312 91 8 chr6 115002858 115003123 -34513914 - B4A SINE B4 -5 287 1 6 1462 742 279 6 13 chr6 115003143 115003299 -34513738 + RSINE1 SINE B4 9 163 -2 7 1462 446 312 98 5 chr6 115003315 115003508 -34513529 - L1MB3 LINE L1 -370 5813 5603 5 1462 1457 240 10 102 chr6 115003536 115003936 -34513101 - MTE2a LTR MaLR 0 379 17 8 1462 1660 164 5 35 chr6 115003937 115004256 -34512781 - RLTR10E LTR ERVK 0 390 1 9 1462 363 313 0 0 chr6 115004288 115004387 -34512650 - PB1D10 SINE Alu -16 101 3 1 1462 400 299 281 13 chr6 115004565 115004864 -34512173 - L1MB3 LINE L1 -1206 4940 4562 5 1462 212 197 40 53 chr6 115005089 115005164 -34511873 + GA-rich Low_complexity Low_complexity 3 76 0 1 1462 344 281 78 17 chr6 115005754 115005870 -34511167 - PB1 SINE Alu -2 125 3 1 1462 364 281 191 82 chr6 115005870 115006053 -34510984 + MLT2B4 LTR ERVL 353 556 0 1 1462 874 274 27 23 chr6 115006163 115006383 -34510654 - B4A SINE B4 -8 284 64 1 1462 180 0 0 0 chr6 115006609 115006629 -34510408 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1462 648 97 0 0 chr6 115007133 115007226 -34509811 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 1462 216 67 0 0 chr6 115007226 115007256 -34509781 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1462 482 248 9 9 chr6 115007280 115007386 -34509651 - PB1 SINE Alu -1 126 21 1 1462 578 281 165 52 chr6 115007474 115007819 -34509218 + MLT1C LTR MaLR 80 463 -4 1 1462 338 245 190 74 chr6 115008086 115008249 -34508788 - LTR16A LTR ERVL -24 427 246 2 1462 1066 223 9 5 chr6 115008542 115008754 -34508283 - B3 SINE B2 -3 213 1 2 1462 324 0 0 0 chr6 115008803 115008839 -34508198 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1462 290 234 0 59 chr6 115008839 115008907 -34508130 - ID2 SINE ID -13 70 7 2 1462 434 315 61 144 chr6 115008982 115009342 -34507695 - ORR1E LTR MaLR -29 330 1 2 1462 1120 206 201 25 chr6 115009717 115009774 -34507263 - MTE2a LTR MaLR -4 375 310 2 1462 249 33 0 0 chr6 115009774 115009804 -34507233 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1462 1120 206 201 25 chr6 115009804 115010065 -34506972 - MTE2a LTR MaLR -70 309 1 2 1462 303 333 45 56 chr6 115010070 115010248 -34506789 - L1ME4a LINE L1 -27 6097 5922 2 1462 260 269 69 9 chr6 115010335 115010451 -34506586 - L1ME4a LINE L1 -1 6123 6001 2 1462 313 235 15 0 chr6 115010529 115010597 -34506440 - ID4 SINE ID -7 76 8 2 1462 270 136 0 0 chr6 115011048 115011092 -34505945 + (CCCA)n Simple_repeat Simple_repeat 3 46 0 3 1462 35 0 0 0 chr6 115011133 115011168 -34505869 + AT_rich Low_complexity Low_complexity 1 35 0 3 1462 1077 237 5 23 chr6 115011322 115011542 -34505495 - B3 SINE B2 0 216 1 3 1462 223 160 57 57 chr6 115011567 115011620 -34505417 - PB1D10 SINE Alu -1 116 64 3 1462 1044 30 89 0 chr6 115011678 115011813 -34505224 - B1_Mus1 SINE Alu 0 148 2 3 1462 903 105 0 0 chr6 115011989 115012122 -34504915 + (GA)n Simple_repeat Simple_repeat 2 134 0 3 1462 324 291 38 30 chr6 115012176 115012307 -34504730 - L2c LINE L2 -237 3150 3019 3 1462 1656 128 20 51 chr6 115012381 115012676 -34504361 + Lx2 LINE L1 6712 6997 0 3 1462 1751 191 114 5 chr6 115013260 115013638 -34503399 + MTD LTR MaLR 1 419 0 3 1462 462 256 175 18 chr6 115013824 115013995 -34503042 + B3A SINE B2 1 198 0 3 1462 554 223 6 0 chr6 115014089 115014246 -34502791 + (CA)n Simple_repeat Simple_repeat 1 158 0 4 1462 719 242 62 46 chr6 115014251 115014446 -34502591 + Lx8 LINE L1 6988 7185 -288 4 1462 272 114 0 0 chr6 115014460 115014504 -34502533 + Lx8 LINE L1 7429 7472 -1 4 1462 270 321 28 0 chr6 115014964 115015070 -34501967 + L1M5 LINE L1 5581 5689 -435 4 1462 1056 84 7 7 chr6 115015121 115015265 -34501772 - B1_Mm SINE Alu 0 147 4 4 1462 458 291 68 68 chr6 115015474 115015695 -34501342 + MARNA DNA Mariner 135 355 -231 4 1462 196 274 69 107 chr6 115016317 115016448 -34500589 + MIR SINE MIR 77 202 -60 4 1462 327 330 86 9 chr6 115016864 115016980 -34500057 + MER117 DNA MER1_type 73 197 0 4 1462 758 238 105 9 chr6 115017003 115017232 -34499805 + MER5C DNA MER1_type 16 266 -47 4 1462 292 270 14 0 chr6 115018208 115018282 -34498755 + ID4_ SINE ID 2 76 -7 4 1462 219 351 13 0 chr6 115018325 115018402 -34498635 + MIR SINE MIR 95 172 -90 5 1462 444 237 11 0 chr6 115018520 115018613 -34498424 + B1_Mur4 SINE Alu 57 150 0 5 1462 1240 154 14 23 chr6 115018889 115019108 -34497929 - ORR1B2 LTR MaLR 0 367 151 5 1462 309 109 0 0 chr6 115019195 115019241 -34497796 + (GGA)n Simple_repeat Simple_repeat 2 47 0 5 1462 229 263 62 21 chr6 115019241 115019338 -34497699 + L1M5 LINE L1 5331 5431 -742 5 1462 300 323 0 0 chr6 115019354 115019442 -34497595 + ID2 SINE ID 10 97 -55 5 1462 248 53 0 26 chr6 115019462 115019501 -34497536 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1462 453 121 0 0 chr6 115019567 115019650 -34497387 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 1462 545 0 15 0 chr6 115019794 115019859 -34497178 + (CAA)n Simple_repeat Simple_repeat 1 66 0 5 1462 256 280 0 51 chr6 115020086 115020165 -34496872 - ID4_ SINE ID 0 83 9 5 1462 317 332 114 9 chr6 115021207 115021426 -34495611 + MIRb SINE MIR 20 261 -7 6 1462 1251 229 93 39 chr6 115021427 115021782 -34495255 + MTEa LTR MaLR 4 377 -2 6 1462 29 0 0 0 chr6 115022141 115022170 -34494867 + AT_rich Low_complexity Low_complexity 1 29 0 6 1462 211 287 148 11 chr6 115022355 115022443 -34494594 - AmnSINE1 SINE SINE -449 126 27 6 1462 236 314 33 55 chr6 115022385 115022476 -34494561 - 5S rRNA rRNA -32 89 1 6 1462 1045 272 122 39 chr6 115022610 115022947 -34494090 - MTEa LTR MaLR -4 375 11 6 1462 3700 49 0 0 chr6 115023030 115023480 -34493557 - L1Md_F2 LINE L1 -391 5492 5043 6 1462 811 33 0 0 chr6 115023478 115023569 -34493468 + L1Md_F2 LINE L1 5496 5586 -297 6 1462 7910 60 14 0 chr6 115023569 115024539 -34492498 + L1Md_F2 LINE L1 5587 6570 -12 6 1462 603 27 0 0 chr6 115024546 115024619 -34492418 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 6 1462 498 83 13 40 chr6 115024778 115024853 -34492184 - L1Md_F2 LINE L1 -711 5871 5799 6 1462 261 226 0 0 chr6 115024909 115024962 -34492075 + ID_B1 SINE B4 114 166 -58 6 1462 487 198 0 11 chr6 115024961 115025048 -34491989 - MER44D DNA MER2_type -603 102 17 7 1462 951 117 18 0 chr6 115025547 115025718 -34491319 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 7 1462 885 272 44 47 chr6 115026023 115026320 -34490717 - L1MB7 LINE L1 -23 6161 5866 7 1462 229 238 292 13 chr6 115026323 115026376 -34490661 - B1_Mur1 SINE Alu -37 112 58 7 1462 235 17 169 0 chr6 115026376 115026435 -34490602 + (CCTG)n Simple_repeat Simple_repeat 2 70 0 7 1462 229 233 297 14 chr6 115026435 115026468 -34490569 - B1_Mur1 SINE Alu -92 57 3 7 1462 209 205 0 0 chr6 115026508 115026547 -34490490 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 7 1462 253 227 9 102 chr6 115026547 115026655 -34490382 - L1MB7 LINE L1 -325 5853 5756 7 1462 233 340 109 41 chr6 115026779 115027000 -34490037 - MLT1J1 LTR MaLR -188 256 21 7 1462 987 259 19 5 chr6 115027417 115027630 -34489407 - ID_B1 SINE B4 0 224 9 7 1462 338 324 200 39 chr6 115027667 115028039 -34488998 + MLT1J LTR MaLR 29 461 -51 7 1462 231 347 20 124 chr6 115028374 115028575 -34488462 - MIRb SINE MIR -30 238 59 7 1462 216 190 207 0 chr6 115029542 115029600 -34487437 - ID4_ SINE ID -2 81 12 8 1462 234 208 208 0 chr6 115029552 115029605 -34487432 - tRNA-Ala-GCA tRNA tRNA -11 64 1 8 1462 279 0 0 0 chr6 115029605 115029636 -34487401 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1462 1082 61 0 0 chr6 115029638 115029770 -34487267 - B1_Mus2 SINE Alu -13 134 3 8 1462 773 245 11 11 chr6 115029813 115030003 -34487034 + B3A SINE B2 5 194 -4 8 1462 780 232 0 7 chr6 115030038 115030181 -34486856 + B1_Mur1 SINE Alu 1 142 -7 8 1462 770 250 132 36 chr6 115030723 115030972 -34486065 + B4A SINE B4 2 274 -18 8 1462 1204 48 7 0 chr6 115031401 115031546 -34485491 - B1_Mm SINE Alu 0 147 2 8 1462 534 292 101 91 chr6 115031785 115032265 -34484772 - MLT1K LTR MaLR -14 581 40 8 1462 243 284 108 0 chr6 115032265 115032367 -34484670 + MLT2B2 LTR ERVL 2 114 -401 8 1462 404 324 10 0 chr6 115032383 115032485 -34484552 - PB1D10 SINE Alu -10 107 5 9 1462 791 199 78 16 chr6 115032475 115032668 -34484369 - ORR1D2 LTR MaLR -152 207 1 9 1462 388 313 38 87 chr6 115032668 115032879 -34484158 + MLT2B2 LTR ERVL 345 548 -14 8 1462 338 318 7 87 chr6 115033371 115033509 -34483528 - PB1 SINE Alu 0 127 1 9 1462 829 264 124 4 chr6 115033554 115033813 -34483224 + B4 SINE B4 2 291 -1 9 1462 414 0 0 0 chr6 115033817 115033863 -34483174 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1462 1003 217 5 33 chr6 115034000 115034214 -34482823 + B3 SINE B2 2 209 -7 9 1462 301 295 120 0 chr6 115034295 115034435 -34482602 - MIRb SINE MIR -49 219 57 9 1462 21 0 0 0 chr6 115034435 115034456 -34482581 + AT_rich Low_complexity Low_complexity 1 21 0 9 1462 186 189 0 0 chr6 115034814 115034851 -34482186 + (TTG)n Simple_repeat Simple_repeat 2 38 0 9 1462 398 292 32 32 chr6 115034881 115035005 -34482032 + ID_B1 SINE B4 95 218 -6 9 1462 519 231 73 72 chr6 115035003 115035243 -34481794 + MLT1B LTR MaLR 104 370 -20 1 1462 342 279 78 78 chr6 115035820 115035999 -34481038 - MIR3 SINE MIR -9 199 21 1 1462 627 269 0 76 chr6 115036195 115036352 -34480685 - ID_B1 SINE B4 -4 220 76 1 1462 306 297 44 18 chr6 115036495 115036608 -34480429 - L1ME4a LINE L1 -43 6081 5966 1 1462 438 305 15 0 chr6 115036679 115036810 -34480227 + MIR SINE MIR 4 136 -126 1 1462 593 147 36 18 chr6 115037143 115037254 -34479783 + PB1D10 SINE Alu 2 114 -3 1 1462 2614 145 32 5 chr6 115037386 115037796 -34479241 + MTC LTR MaLR 1 421 0 1 1462 376 324 59 37 chr6 115038821 115039093 -34477944 - MER113 DNA MER1_type -128 393 116 1 1462 22 56 0 0 chr6 115039103 115039139 -34477898 + AT_rich Low_complexity Low_complexity 1 36 0 1 1462 771 256 80 20 chr6 115039194 115039393 -34477644 + B3 SINE B2 1 211 -5 1 1462 391 356 98 0 chr6 115039423 115039555 -34477482 + RSINE1 SINE B4 16 160 -5 1 1462 420 294 22 122 chr6 115039771 115040000 -34477037 + RMER15 LTR ERVL 363 568 -7 1 1462 420 20 0 0 chr6 115040000 115040049 -34476988 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1462 468 51 0 0 chr6 115040049 115040107 -34476930 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1462 441 266 0 75 chr6 115040232 115040307 -34476730 + ID_B1 SINE B4 91 164 -60 1 1462 2028 155 56 14 chr6 115040307 115040666 -34476371 + ORR1D1 LTR MaLR 1 374 0 1 1462 441 266 0 75 chr6 115040666 115040724 -34476313 + ID_B1 SINE B4 165 214 -10 1 1462 243 0 0 0 chr6 115040724 115040751 -34476286 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1462 246 329 0 24 chr6 115040755 115040839 -34476198 + ID4_ SINE ID 2 83 0 1 1462 239 349 88 52 chr6 115040839 115040891 -34476146 + ID_B1 SINE B4 2 142 -82 1 1462 185 0 40 0 chr6 115041645 115041670 -34475367 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1 1462 808 154 30 30 chr6 115041681 115041815 -34475222 - B1_Mus1 SINE Alu -12 136 3 1 1462 302 307 40 60 chr6 115041978 115042127 -34474910 - LTR16C LTR ERVL -95 394 249 1 1462 258 32 0 0 chr6 115042130 115042161 -34474876 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1462 352 150 33 0 chr6 115042162 115042222 -34474815 + HAL1-3A_ME LINE L1 1963 2024 -834 1 1462 996 280 185 15 chr6 115042427 115042737 -34474300 + MTC LTR MaLR 8 366 -55 1 1462 1080 180 229 16 chr6 115042737 115043042 -34473995 - ORR1D1 LTR MaLR 0 374 5 1 1462 996 146 145 8 chr6 115043042 115043085 -34473952 + MTC LTR MaLR 364 418 -1 1 1462 245 288 0 161 chr6 115043210 115043297 -34473740 + tRNA-Ala-GCY_ tRNA tRNA 3 75 0 1 1462 415 203 137 8 chr6 115043364 115043488 -34473549 + L1MB7 LINE L1 6029 6168 -16 1 1462 449 183 0 12 chr6 115043498 115043581 -34473456 + L1M4 LINE L1 4783 4864 -1282 1 1462 435 301 65 46 chr6 115043594 115043747 -34473290 - MLT1D LTR MaLR -349 156 1 1 1462 317 273 173 0 chr6 115043753 115043863 -34473174 - MIR SINE MIR -121 141 13 1 1462 351 0 0 0 chr6 115043930 115043969 -34473068 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1462 1562 169 148 91 chr6 115044089 115044474 -34472563 + MTB_Mm LTR MaLR 1 407 0 1 1462 303 270 68 29 chr6 115044743 115044846 -34472191 - MLT1N2 LTR MaLR 0 365 259 1 1462 727 237 164 59 chr6 115044819 115045124 -34471913 - MLT2B4 LTR ERVL -217 339 3 1 1462 511 318 53 29 chr6 115045131 115045338 -34471699 - MLT1B LTR MaLR -4 386 161 1 1462 897 60 0 0 chr6 115045340 115045456 -34471581 + (TCTCCC)n Simple_repeat Simple_repeat 6 121 0 1 1462 278 229 131 0 chr6 115045468 115045529 -34471508 - ID4_ SINE ID -14 69 1 1 1462 386 333 60 0 chr6 115045846 115046014 -34471023 + MIRb SINE MIR 26 203 -65 1 1462 302 331 30 59 chr6 115046404 115046539 -34470498 - MIRc SINE MIR -46 216 86 1 1462 932 252 46 81 chr6 115046547 115046747 -34470290 + B4 SINE B4 4 215 -77 1 1462 198 0 0 0 chr6 115046747 115046769 -34470268 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 1462 969 236 15 0 chr6 115046779 115046978 -34470059 + B3 SINE B2 1 202 -14 1 1462 932 252 46 81 chr6 115046978 115047051 -34469986 + B4 SINE B4 216 278 -14 1 1462 999 213 15 41 chr6 115047165 115047361 -34469676 + B3A SINE B2 2 192 -6 1 1462 910 237 214 48 chr6 115047493 115047830 -34469207 + MTD LTR MaLR 1 393 -26 1 1462 885 107 0 0 chr6 115047830 115047961 -34469076 + (CATATA)n Simple_repeat Simple_repeat 2 132 0 1 1462 712 73 99 127 chr6 115048112 115048254 -34468783 + B1_Mus1 SINE Alu 2 139 -9 1 1462 180 0 0 0 chr6 115048254 115048274 -34468763 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1462 313 333 38 75 chr6 115048426 115048559 -34468478 - MLT1N2 LTR MaLR -341 221 94 1 1462 255 170 0 0 chr6 115048670 115048717 -34468320 + (CAA)n Simple_repeat Simple_repeat 1 47 0 1 1462 360 0 0 0 chr6 115048717 115048757 -34468280 + (CTA)n Simple_repeat Simple_repeat 1 40 0 1 1462 1664 223 28 68 chr6 115048962 115049357 -34467680 - MTE2a LTR MaLR 0 379 1 1 1462 485 200 0 32 chr6 115049393 115049486 -34467551 + PB1D9 SINE Alu 24 113 -7 1 1462 677 227 15 0 chr6 115049547 115049679 -34467358 - MER5A1 DNA MER1_type -7 159 26 1 1462 619 265 98 138 chr6 115050198 115050474 -34466563 - B4A SINE B4 -27 265 1 1 1462 508 266 36 11 chr6 115050623 115050810 -34466227 - Lx7 LINE L1 -433 5867 5637 1 1462 440 320 113 11 chr6 115051476 115051653 -34465384 + ORR1E LTR MaLR 1 195 -164 1 1462 1103 195 54 0 chr6 115052229 115052434 -34464603 + B3 SINE B2 1 216 0 1 1462 223 422 6 38 chr6 115053404 115053564 -34463473 + MIRb SINE MIR 1 155 -121 1 1462 342 173 0 0 chr6 115053660 115053712 -34463325 + PB1D9 SINE Alu 5 56 -64 1 1462 639 238 155 21 chr6 115053856 115054049 -34462988 - ID_B1 SINE B4 -4 220 2 1 1462 899 276 18 14 chr6 115054479 115054699 -34462338 - B4A SINE B4 -65 227 7 1 1462 233 333 146 46 chr6 115055168 115055319 -34461718 - MLT1K LTR MaLR 0 595 430 1 1462 599 356 72 63 chr6 115055381 115055825 -34461212 + LTR16B2 LTR ERVL 3 450 -12 1 1462 447 325 70 31 chr6 115055838 115056197 -34460840 + LTR16B2 LTR ERVL 35 404 -58 1 1462 1249 276 45 24 chr6 115056392 115056774 -34460263 - Lx8 LINE L1 -830 6643 6254 1 1462 327 49 0 0 chr6 115056919 115056960 -34460077 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1462 247 352 0 0 chr6 115057057 115057128 -34459909 - ID4_ SINE ID -1 82 12 1 1462 430 319 25 17 chr6 115057210 115057328 -34459709 + MLT1B LTR MaLR 204 322 -68 1 1462 432 310 65 88 chr6 115057494 115057756 -34459281 - B4A SINE B4 -35 257 2 1 1462 227 167 0 0 chr6 115058325 115058361 -34458676 + ID4_ SINE ID 4 39 -44 1 1462 293 318 0 0 chr6 115058477 115058543 -34458494 - B4A SINE B4 0 292 227 1 1462 544 150 63 11 chr6 115058516 115058715 -34458322 - ORR1C2 LTR MaLR -4 370 138 1 1462 348 290 38 22 chr6 115058773 115058956 -34458081 - MLT1A1 LTR MaLR -6 402 166 1 1462 5101 128 50 15 chr6 115059758 115060638 -34456399 - MTB-int LTR MaLR -345 913 3 1 1462 3478 53 2 12 chr6 115060638 115061042 -34455995 - MTB LTR MaLR 0 400 1 1 1462 1690 241 33 31 chr6 115061081 115061139 -34455898 + MTD LTR MaLR 30 86 -333 1 1462 2321 74 29 0 chr6 115061139 115061451 -34455586 + Lx2A1 LINE L1 6688 7008 0 1 1462 1690 241 33 31 chr6 115061451 115061781 -34455256 + MTD LTR MaLR 87 419 0 1 1462 233 261 0 21 chr6 115061797 115061844 -34455193 - RSINE1 SINE B4 -117 48 3 1 1462 759 334 102 63 chr6 115061844 115061957 -34455080 - L1M5 LINE L1 -832 5314 5204 1 1462 690 262 0 32 chr6 115061957 115062111 -34454926 - B1F SINE Alu 0 149 1 1 1462 759 334 102 63 chr6 115062111 115062931 -34454106 - L1M5 LINE L1 -943 5203 4345 1 1462 1220 82 0 0 chr6 115063495 115063642 -34453395 + B1_Mus2 SINE Alu 1 147 0 1 1462 189 0 0 0 chr6 115063642 115063663 -34453374 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1462 26978 135 17 5 chr6 115063694 115069850 -34447187 + Lx LINE L1 417 6654 0 1 1462 1634 174 141 19 chr6 115069988 115070356 -34446681 + MTD LTR MaLR 5 417 -2 1 1462 434 18 0 18 chr6 115070544 115070600 -34446437 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 1 1462 857 202 19 83 chr6 115070605 115070810 -34446227 - B3A SINE B2 -4 194 3 1 1462 974 211 43 24 chr6 115071143 115071352 -34445685 - B3 SINE B2 -3 213 1 1 1462 4012 92 4 4 chr6 115071523 115072044 -34444993 + L1Md_F2 LINE L1 6047 6567 -15 1 1462 226 305 37 112 chr6 115072197 115072304 -34444733 - L2c LINE L2 -19 3368 3270 1 1462 305 302 31 20 chr6 115072691 115072789 -34444248 + LTR16C LTR ERVL 378 476 -13 1 1462 203 0 37 0 chr6 115072963 115072990 -34444047 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 1 1462 622 188 17 0 chr6 115073010 115073127 -34443910 + B1_Mur4 SINE Alu 27 145 -5 1 1462 255 79 0 0 chr6 115073141 115073179 -34443858 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1462 182 228 51 34 chr6 115073242 115073301 -34443736 + L2b LINE L2 3064 3123 -252 1 1462 407 274 114 12 chr6 115074079 115074245 -34442792 - MIRb SINE MIR -76 192 10 1 1462 432 233 18 64 chr6 115074434 115074544 -34442493 + RSINE1 SINE B4 3 107 -58 1 1462 356 265 107 16 chr6 115074610 115074764 -34442273 + MIRb SINE MIR 49 221 -47 1 1462 186 333 93 34 chr6 115075438 115075556 -34441481 + MIRb SINE MIR 135 259 -9 1 1462 770 275 42 9 chr6 115075845 115076058 -34440979 - ID_B1 SINE B4 0 224 5 1 1462 187 309 0 0 chr6 115076224 115076279 -34440758 - MIRb SINE MIR -180 88 34 1 1462 198 106 0 60 chr6 115076750 115076800 -34440237 + G-rich Low_complexity Low_complexity 1 47 0 1 1462 261 286 195 13 chr6 115077058 115077207 -34439830 + MIRb SINE MIR 31 206 -62 2 1462 189 258 56 83 chr6 115077485 115077557 -34439480 - MIR3 SINE MIR -35 173 104 2 1462 329 326 91 0 chr6 115077828 115077960 -34439077 - MIRc SINE MIR -14 254 111 2 1462 473 246 77 26 chr6 115078635 115078752 -34438285 - RSINE1 SINE B4 -39 126 4 2 1462 572 234 0 0 chr6 115078760 115078871 -34438166 - PB1D7 SINE Alu -1 119 9 2 1462 288 0 0 0 chr6 115079014 115079046 -34437991 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1462 1755 147 37 44 chr6 115079061 115079382 -34437655 - ORR1A4 LTR MaLR -1 328 10 2 1462 234 0 0 0 chr6 115079382 115079408 -34437629 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1462 468 51 0 0 chr6 115080084 115080143 -34436894 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 2 1462 1178 43 36 0 chr6 115080143 115080282 -34436755 - B1_Mus2 SINE Alu -3 144 1 2 1462 677 284 116 0 chr6 115080512 115080737 -34436300 - Tigger7 DNA MER2_type -1 2490 2240 2 1462 1026 226 169 26 chr6 115080729 115081078 -34435959 - Tigger7 DNA MER2_type -2021 470 72 2 182 796 227 26 7 chr6 115081074 115081225 -34435812 - RSINE1 SINE B4 -1 164 11 2 1463 361 297 11 0 chr6 115081235 115081326 -34435711 - Tigger7 DNA MER2_type -2399 92 1 2 1463 2305 136 81 3 chr6 115081872 115082255 -34434782 + MTC LTR MaLR 1 413 -8 2 1463 254 365 34 0 chr6 115082451 115082552 -34434485 - L2c LINE L2 -15 3360 3252 2 1463 450 0 0 0 chr6 115082742 115082792 -34434245 + (TAG)n Simple_repeat Simple_repeat 3 52 0 2 1463 1773 135 169 18 chr6 115082792 115083113 -34433924 + ORR1C2 LTR MaLR 10 382 -2 2 1463 788 266 0 21 chr6 115083113 115083301 -34433736 - B3A SINE B2 -13 185 2 2 1463 263 350 47 51 chr6 115083302 115083555 -34433482 + L2c LINE L2 3095 3346 -41 2 1463 251 299 136 8 chr6 115083727 115083845 -34433192 - MIRb SINE MIR -47 221 89 2 1463 435 83 0 0 chr6 115084367 115084427 -34432610 + (TTCA)n Simple_repeat Simple_repeat 1 60 0 2 1463 296 259 136 63 chr6 115085695 115085901 -34431136 + Lx8 LINE L1 7253 7473 0 2 1463 393 117 0 0 chr6 115086244 115086304 -34430733 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 2 1463 462 79 0 0 chr6 115086304 115086367 -34430670 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1463 196 54 81 0 chr6 115086518 115086555 -34430482 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 2 1463 509 110 12 0 chr6 115086935 115087017 -34430020 + (GA)n Simple_repeat Simple_repeat 1 83 0 2 1463 204 385 10 50 chr6 115087385 115087486 -34429551 - MIRb SINE MIR -132 136 40 2 1463 4069 67 41 4 chr6 115088544 115089055 -34427982 - L1_Mus1 LINE L1 0 6567 6038 2 1463 216 0 0 0 chr6 115089573 115089597 -34427440 + (CAAG)n Simple_repeat Simple_repeat 4 27 0 2 1463 468 280 24 0 chr6 115089846 115089971 -34427066 + MER5A1 DNA MER1_type 2 129 -37 2 1463 210 333 0 0 chr6 115090036 115090093 -34426944 - MIRm SINE MIR -9 267 211 2 1463 327 269 26 0 chr6 115090143 115090221 -34426816 + B1F SINE Alu 1 80 -69 2 1463 392 271 8 116 chr6 115090357 115090369 -34426668 - B4 SINE B4 -101 191 158 2 1463 496 246 29 22 chr6 115090369 115090396 -34426641 - B1_Mur2 SINE Alu -12 105 79 2 1463 1296 84 0 0 chr6 115090396 115090575 -34426462 + (TTCCC)n Simple_repeat Simple_repeat 1 179 0 2 1463 496 209 44 0 chr6 115090575 115090654 -34426383 - B1_Mur2 SINE Alu -67 82 2 2 1463 216 200 0 0 chr6 115090656 115090701 -34426336 + (CAT)n Simple_repeat Simple_repeat 2 46 0 2 1463 492 209 209 0 chr6 115090701 115090816 -34426221 - B1_Mur3 SINE Alu -10 139 1 2 1463 1425 84 17 0 chr6 115090836 115091014 -34426023 - B2_Mm2 SINE B2 -14 181 1 2 1463 909 167 13 0 chr6 115091544 115091694 -34425343 + B3A SINE B2 2 153 -45 2 1463 204 206 0 0 chr6 115091875 115091909 -34425128 + polypurine Low_complexity Low_complexity 3 36 0 2 1463 506 308 75 0 chr6 115091915 115092048 -34424989 - RSINE1 SINE B4 -15 150 8 2 1463 982 212 47 5 chr6 115092094 115092284 -34424753 - B3A SINE B2 0 198 1 2 1463 182 390 9 19 chr6 115092907 115093014 -34424023 + MIR3 SINE MIR 91 196 -12 2 1463 856 164 64 0 chr6 115093195 115093335 -34423702 - B1_Mur4 SINE Alu 0 150 2 2 1463 251 348 24 8 chr6 115093382 115093509 -34423528 - MIRc SINE MIR -8 260 125 2 1463 4274 49 17 8 chr6 115093614 115094149 -34422888 - Lx3_Mus LINE L1 -254 6755 6216 2 1463 327 196 221 32 chr6 115094159 115094254 -34422783 - B1F SINE Alu 0 149 37 2 1463 182 319 56 0 chr6 115094329 115094401 -34422636 + MIRc SINE MIR 6 81 -187 2 1463 252 59 0 0 chr6 115094503 115094537 -34422500 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1463 1056 116 0 0 chr6 115094537 115094675 -34422362 - B1_Mus1 SINE Alu -10 138 1 2 1463 228 121 16 49 chr6 115095185 115095246 -34421791 + CT-rich Low_complexity Low_complexity 2 60 0 2 1463 204 125 0 0 chr6 115095312 115095344 -34421693 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1463 1440 216 99 66 chr6 115095911 115096071 -34420966 - ORR1D1 LTR MaLR 0 374 205 2 1463 694 220 14 41 chr6 115096071 115096218 -34420819 - B1_Mur3 SINE Alu -2 147 5 2 1463 1440 216 99 66 chr6 115096218 115096419 -34420618 - ORR1D1 LTR MaLR -170 204 1 2 1463 347 0 23 0 chr6 115096892 115096935 -34420102 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 2 1463 201 74 0 0 chr6 115096950 115096977 -34420060 + (TATG)n Simple_repeat Simple_repeat 1 27 0 2 1463 588 285 7 68 chr6 115096977 115097124 -34419913 - RSINE1 SINE B4 -24 141 4 2 1463 2500 107 52 27 chr6 115097372 115097737 -34419300 - ORR1C1 LTR MaLR -4 374 1 2 1463 184 407 51 28 chr6 115098367 115098544 -34418493 + L2c LINE L2 2910 3090 -297 2 1463 26 30 0 0 chr6 115098888 115098921 -34418116 + AT_rich Low_complexity Low_complexity 1 33 0 2 1463 379 290 5 3 chr6 115099097 115099208 -34417829 + PB1D10 SINE Alu 1 112 -37 2 1463 346 330 26 26 chr6 115099209 115099399 -34417638 - L1MA9 LINE L1 -86 6226 6037 2 1463 16568 53 3 1 chr6 115100148 115102886 -34414151 - L1Md_F2 LINE L1 -13 6569 3825 2 1463 9745 78 0 0 chr6 115102885 115104170 -34412867 + L1Md_F2 LINE L1 2575 3859 -2024 2 1463 270 346 0 12 chr6 115104352 115104434 -34412603 - ID4 SINE ID -2 81 1 2 1463 434 324 21 35 chr6 115104446 115104590 -34412447 - ID_B1 SINE B4 -10 214 73 2 1463 207 0 0 0 chr6 115105323 115105346 -34411691 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1463 345 62 0 0 chr6 115105494 115105542 -34411495 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1463 240 288 146 36 chr6 115106027 115106164 -34410873 - MIR SINE MIR 0 262 111 2 1463 1354 97 21 0 chr6 115107624 115107810 -34409227 - Lx2 LINE L1 0 6997 6808 2 1463 773 203 26 7 chr6 115107818 115107972 -34409065 - B3 SINE B2 -57 159 3 2 1463 4006 114 52 3 chr6 115110068 115110649 -34406388 + Lx2 LINE L1 6389 6997 0 2 1463 24 32 0 0 chr6 115112338 115112369 -34404668 + AT_rich Low_complexity Low_complexity 1 31 0 2 1463 737 191 111 0 chr6 115112580 115112706 -34404331 - B1_Mur1 SINE Alu -8 141 2 2 1463 773 315 81 7 chr6 115113072 115113344 -34403693 + B4A SINE B4 1 292 0 2 1463 403 311 81 29 chr6 115114294 115114532 -34402505 - L1ME2 LINE L1 -128 6045 5798 2 1463 542 252 81 7 chr6 115115232 115115368 -34401669 + B1_Mur2 SINE Alu 1 146 -3 2 1463 1110 53 20 0 chr6 115115679 115115829 -34401208 - L1_Mus2 LINE L1 0 6566 6414 2 1463 781 248 117 20 chr6 115117060 115117360 -34399677 - L1MB7 LINE L1 -19 6165 5837 2 1463 252 0 0 0 chr6 115117376 115117404 -34399633 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2 1463 338 311 71 43 chr6 115117465 115117606 -34399431 - L1MB7 LINE L1 -346 5828 5684 2 1463 220 210 19 39 chr6 115117620 115117724 -34399313 + CT-rich Low_complexity Low_complexity 5 106 0 2 1463 573 234 53 114 chr6 115117745 115118352 -34398685 - L1MB7 LINE L1 -515 5659 5082 2 1463 347 216 177 67 chr6 115118354 115118518 -34398519 + B3A SINE B2 1 182 -16 2 1463 21 0 0 0 chr6 115118528 115118549 -34398488 + AT_rich Low_complexity Low_complexity 1 21 0 2 1463 274 319 0 0 chr6 115118604 115118673 -34398364 - ID4 SINE ID -13 70 2 2 1463 245 275 11 0 chr6 115118697 115118788 -34398249 - L1MB7 LINE L1 -1112 5034 4943 2 1463 231 61 0 0 chr6 115119551 115119584 -34397453 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 2 1463 199 200 100 0 chr6 115120019 115120069 -34396968 + L2 LINE L2 1591 1645 -1774 2 1463 799 234 11 28 chr6 115120204 115120384 -34396653 + B3A SINE B2 4 180 -18 2 1463 269 200 91 15 chr6 115120427 115120493 -34396544 + B3A SINE B2 1 71 -127 2 1463 1101 186 14 5 chr6 115120493 115120704 -34396333 - Lx7 LINE L1 -458 7238 7026 2 1463 815 29 0 10 chr6 115120798 115120901 -34396136 + (TTCCC)n Simple_repeat Simple_repeat 2 103 0 2 1463 28 0 0 0 chr6 115120905 115120933 -34396104 + AT_rich Low_complexity Low_complexity 1 28 0 2 1463 224 219 0 0 chr6 115120938 115120979 -34396058 + CT-rich Low_complexity Low_complexity 6 46 0 2 1463 1150 177 89 43 chr6 115120983 115121308 -34395729 + Lx7 LINE L1 7357 7696 0 2 1463 601 316 26 0 chr6 115121316 115121468 -34395569 + B3A SINE B2 27 182 -16 2 1463 22 35 0 0 chr6 115121541 115121570 -34395467 + AT_rich Low_complexity Low_complexity 1 29 0 2 1463 263 261 63 103 chr6 115121972 115122147 -34394890 + MLT1C LTR MaLR 53 220 -247 2 1463 355 326 103 7 chr6 115122633 115122769 -34394268 + MLT1C LTR MaLR 247 395 -72 2 1463 258 20 19 58 chr6 115123324 115123376 -34393661 + L1Md_F2 LINE L1 6529 6578 -4 2 1463 1076 54 7 0 chr6 115123393 115123542 -34393495 + L1Md_F2 LINE L1 6429 6578 -4 2 1463 42 71 0 0 chr6 115123601 115123685 -34393352 + AT_rich Low_complexity Low_complexity 1 84 0 2 1463 296 291 0 0 chr6 115124171 115124250 -34392787 - ID2 SINE ID 0 83 5 2 1463 308 296 45 0 chr6 115124506 115124594 -34392443 + MLT1K LTR MaLR 134 225 -370 2 1463 940 264 42 45 chr6 115125983 115126272 -34390765 + B4 SINE B4 5 292 0 3 1463 4037 53 4 21 chr6 115126404 115126927 -34390110 + L1_Mus1 LINE L1 6050 6563 -4 3 1463 328 350 68 19 chr6 115127531 115127796 -34389241 - L2 LINE L2 -1729 1690 1413 3 1463 208 322 72 26 chr6 115128501 115128669 -34388368 - MIRc SINE MIR -77 185 20 3 1463 688 176 29 51 chr6 115129158 115129296 -34387741 - B1_Mur1 SINE Alu -13 136 2 3 1463 236 307 0 0 chr6 115129551 115129626 -34387411 - ID4_ SINE ID 0 83 9 3 1463 186 319 0 0 chr6 115130373 115130420 -34386617 - L2a LINE L2 -10 3416 3370 3 1463 464 262 94 16 chr6 115132679 115132807 -34384230 + MTD LTR MaLR 1 138 -281 3 1463 382 210 116 27 chr6 115132838 115132985 -34384052 + L1MC3 LINE L1 7626 7785 0 3 1463 214 288 84 70 chr6 115133293 115133364 -34383673 - ID4 SINE ID -11 72 1 3 1463 186 43 0 0 chr6 115133746 115133769 -34383268 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 3 1463 1157 48 7 0 chr6 115133774 115133921 -34383116 - B1_Mus1 SINE Alu 0 148 1 3 1463 423 0 0 0 chr6 115134303 115134350 -34382687 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1463 354 380 33 6 chr6 115134626 115134806 -34382231 - HAL1 LINE L1 -863 1644 1460 3 1463 1248 41 0 0 chr6 115134808 115134954 -34382083 - B1_Mus2 SINE Alu 0 147 2 3 1463 1215 275 96 17 chr6 115135179 115135852 -34381185 - L1MB7 LINE L1 -81 6103 5363 3 1463 339 282 0 0 chr6 115135967 115136052 -34380985 - ID2 SINE ID -55 97 13 3 1463 362 239 116 0 chr6 115136062 115136217 -34380820 - L1MB7 LINE L1 -963 5183 5011 3 1463 468 0 0 0 chr6 115136233 115136285 -34380752 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1463 327 211 70 0 chr6 115136285 115136356 -34380681 - ORR1D2 LTR MaLR -294 76 1 3 1463 2311 104 0 50 chr6 115136613 115136956 -34380081 - ORR1A3 LTR MaLR 0 326 1 3 1463 765 245 0 13 chr6 115138426 115138575 -34378462 + B1_Mur1 SINE Alu 3 149 0 3 1463 2737 165 107 0 chr6 115138701 115139241 -34377796 + RMER1B Other Other 469 1066 0 3 1463 2149 60 0 3 chr6 115139311 115139610 -34377427 - MusHAL1 LINE L1 -1615 1097 800 3 1463 477 0 0 0 chr6 115139681 115139734 -34377303 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1463 557 306 0 34 chr6 115139739 115139888 -34377149 + RSINE1 SINE B4 3 146 -19 3 1463 702 281 37 16 chr6 115140682 115140870 -34376167 - RMER30 DNA MER1_type -1 201 10 3 1463 224 30 0 29 chr6 115141008 115141042 -34375995 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1463 917 282 99 12 chr6 115141093 115141416 -34375621 - MER68 LTR ERVL -210 353 3 3 1463 180 342 62 12 chr6 115141433 115141513 -34375524 + L3 LINE CR1 4288 4371 -118 3 1463 183 100 0 0 chr6 115142129 115142159 -34374878 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1463 826 200 77 13 chr6 115142379 115142612 -34374425 + L1M3 LINE L1 3679 3926 -2217 3 1463 800 162 7 34 chr6 115142644 115142791 -34374246 + B1_Mur3 SINE Alu 2 144 -5 3 1463 203 103 0 25 chr6 115142796 115142836 -34374201 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 3 1463 1445 273 111 29 chr6 115142881 115143757 -34373280 + L1M3 LINE L1 4121 5068 -1072 3 1463 342 152 0 0 chr6 115144628 115144687 -34372350 + C-rich Low_complexity Low_complexity 5 63 0 3 1463 538 177 177 46 chr6 115144731 115144861 -34372176 - B1_Mus2 SINE Alu 0 147 1 3 1463 373 228 94 57 chr6 115145827 115145934 -34371103 - B1F SINE Alu -1 148 17 3 1463 1053 193 81 18 chr6 115145938 115146160 -34370877 + RLTR25A LTR ERVK 868 1103 0 3 1463 880 255 20 149 chr6 115146447 115146742 -34370295 + MTE2b LTR MaLR 6 262 -117 3 1463 466 185 241 0 chr6 115146848 115146956 -34370081 + MTE2b LTR MaLR 246 379 0 3 1463 1226 256 19 135 chr6 115146961 115147212 -34369825 + MTE2a LTR MaLR 1 212 -167 3 1463 558 301 0 61 chr6 115147212 115147375 -34369662 - RSINE1 SINE B4 -9 156 4 3 1463 1226 256 19 135 chr6 115147375 115147552 -34369485 + MTE2a LTR MaLR 213 379 0 3 1463 329 291 82 142 chr6 115148141 115148493 -34368544 + L1M4 LINE L1 1511 1881 -5023 3 1463 292 243 132 112 chr6 115148505 115148553 -34368484 + L1M4 LINE L1 1904 1946 -5388 3 1463 1335 77 28 0 chr6 115148553 115148735 -34368302 + B2_Mm2 SINE B2 1 187 -8 3 1463 292 243 132 112 chr6 115148735 115148982 -34368055 + L1M4 LINE L1 1947 2205 -5129 3 1463 260 231 32 16 chr6 115148983 115149106 -34367931 + (TA)n Simple_repeat Simple_repeat 1 125 0 3 1463 647 251 4 8 chr6 115149158 115149294 -34367743 - B3A SINE B2 -60 133 1 3 1463 1519 254 96 48 chr6 115149328 115149599 -34367438 + L1M4 LINE L1 3648 3915 -3088 3 1463 561 93 0 36 chr6 115149599 115149711 -34367326 - L1Md_F2 LINE L1 0 6582 6475 3 1463 1519 254 96 48 chr6 115149711 115150286 -34366751 + L1M4 LINE L1 3916 4534 -2469 3 1463 931 105 7 0 chr6 115150314 115150466 -34366571 - Lx3_Mus LINE L1 -1027 5982 5830 3 1463 462 272 149 30 chr6 115151398 115151648 -34365389 - MLT1E3 LTR MaLR -57 567 333 3 1463 332 156 55 32 chr6 115152173 115152391 -34364646 + RMER17D LTR ERVK 251 473 -416 3 1463 214 50 50 0 chr6 115152391 115152431 -34364606 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1463 667 191 46 0 chr6 115152437 115152568 -34364469 - B1_Mur4 SINE Alu -13 137 1 3 1463 194 270 13 51 chr6 115152736 115152814 -34364223 - MIR3 SINE MIR -45 163 89 3 1463 1641 20 0 0 chr6 115152829 115153029 -34364008 - MT-int LTR MaLR -269 829 630 3 1463 23 0 0 0 chr6 115153072 115153095 -34363942 + AT_rich Low_complexity Low_complexity 1 23 0 3 1463 384 252 67 19 chr6 115153212 115153317 -34363720 + B3 SINE B2 103 212 -4 3 1463 2116 155 39 3 chr6 115154406 115154762 -34362275 + ORR1D1 LTR MaLR 1 369 -5 3 1463 3887 55 12 88 chr6 115155016 115155609 -34361428 - L1_Mus2 LINE L1 0 6566 6019 3 1463 637 257 0 27 chr6 115155684 115155832 -34361205 + B1_Mur2 SINE Alu 2 145 -4 3 1463 813 250 70 20 chr6 115155852 115156052 -34360985 - B3 SINE B2 -6 210 1 3 1463 4019 131 16 39 chr6 115156494 115157028 -34360009 + RLTR33 LTR ERVK 1 533 -145 3 1463 1408 52 17 0 chr6 115157028 115157201 -34359836 + B2_Mm2 SINE B2 1 176 -19 3 1463 4019 131 16 39 chr6 115157201 115157360 -34359677 + RLTR33 LTR ERVK 534 678 0 3 1463 357 125 0 0 chr6 115157647 115157703 -34359334 + (T)n Simple_repeat Simple_repeat 1 56 0 3 1463 1129 88 0 13 chr6 115157703 115157852 -34359185 - B1_Mus1 SINE Alu 0 148 2 3 1463 258 105 0 0 chr6 115158041 115158079 -34358958 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1463 312 27 0 0 chr6 115158079 115158115 -34358922 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1463 820 285 41 55 chr6 115159194 115159484 -34357553 + B4 SINE B4 1 286 -6 3 1463 189 147 0 0 chr6 115159496 115159530 -34357507 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 3 1463 291 28 0 0 chr6 115159543 115159579 -34357458 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1463 456 288 10 8 chr6 115161198 115161320 -34355717 - PB1D10 SINE Alu -18 131 9 3 1463 287 289 52 13 chr6 115161251 115161328 -34355709 - B4A SINE B4 -127 165 86 3 1463 294 264 40 81 chr6 115161547 115161635 -34355402 - B1F SINE Alu -46 103 19 3 1463 993 190 254 10 chr6 115161635 115161938 -34355099 + MTEb LTR MaLR 1 377 -2 3 1463 383 268 86 14 chr6 115161971 115162111 -34354926 - MER33 DNA MER1_type -174 150 1 3 1463 190 404 26 52 chr6 115162364 115162479 -34354558 + L2b LINE L2 3264 3375 0 3 1463 292 333 18 9 chr6 115162982 115163091 -34353946 - MIR SINE MIR -57 151 42 3 1463 187 366 28 0 chr6 115164098 115164169 -34352868 + L2b LINE L2 3354 3426 0 3 1463 1064 280 78 40 chr6 115164300 115164334 -34352703 - MLT2C2 LTR ERVL 0 464 427 3 1463 216 0 0 0 chr6 115164334 115164358 -34352679 + (TGGA)n Simple_repeat Simple_repeat 2 25 0 3 1463 1064 280 78 40 chr6 115164358 115164770 -34352267 - MLT2C2 LTR ERVL -38 426 1 3 1463 309 282 69 21 chr6 115164850 115164995 -34352042 + L1MEd LINE L1 26 177 -5942 3 1463 418 372 128 26 chr6 115165012 115165318 -34351719 + L1MEd LINE L1 229 565 -5554 3 1463 386 306 98 58 chr6 115165349 115165554 -34351483 + B4A SINE B4 58 270 -22 3 1463 354 188 116 0 chr6 115165617 115165686 -34351351 - ID4_ SINE ID -3 80 4 3 1463 246 301 33 46 chr6 115165756 115165909 -34351128 + L1MEd LINE L1 1051 1201 -4918 3 1463 412 18 17 17 chr6 115166410 115166468 -34350569 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1463 1239 74 50 22 chr6 115168474 115168654 -34348383 - B2_Mm2 SINE B2 -6 189 5 3 1463 490 224 80 26 chr6 115168675 115168826 -34348211 - L1MB2 LINE L1 -9 6162 6004 3 1463 243 267 12 74 chr6 115168911 115168992 -34348045 + B1F2 SINE Alu 12 87 -62 3 1463 403 304 0 0 chr6 115168992 115169094 -34347943 + PB1D10 SINE Alu 11 112 -5 3 1463 861 280 81 62 chr6 115169105 115169349 -34347688 + L1MA4 LINE L1 5471 5705 -595 3 1463 1804 140 99 38 chr6 115169349 115169691 -34347346 - ORR1B2 LTR MaLR 0 367 5 3 1463 861 279 84 58 chr6 115169691 115169879 -34347158 + L1MA4 LINE L1 5706 5913 -387 3 1463 271 202 0 0 chr6 115170412 115170471 -34346566 - B1F SINE Alu -1 148 61 3 1463 180 300 82 16 chr6 115171148 115171209 -34345828 + MIR SINE MIR 84 148 -60 3 1463 182 91 30 0 chr6 115171866 115171899 -34345138 + (TTG)n Simple_repeat Simple_repeat 3 36 0 3 1463 266 306 71 0 chr6 115171910 115171995 -34345042 - PB1D10 SINE Alu -17 100 10 3 1463 246 329 13 0 chr6 115171929 115172008 -34345029 - ID_B1 SINE B4 -67 157 78 3 1463 315 231 15 0 chr6 115172190 115172255 -34344782 + ID4 SINE ID 1 66 -17 3 1463 339 119 0 0 chr6 115172474 115172541 -34344496 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 1463 249 33 0 0 chr6 115172541 115172571 -34344466 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1463 308 304 74 3 chr6 115172581 115172698 -34344339 - MLT2B4 LTR ERVL -68 492 371 3 1463 198 128 0 0 chr6 115172702 115172741 -34344296 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1463 517 261 35 7 chr6 115172763 115172906 -34344131 - MLT2B4 LTR ERVL -409 147 1 3 1463 2813 115 71 11 chr6 115173028 115173467 -34343570 - RMER4A LTR ERVK -1 465 1 3 1463 914 189 103 0 chr6 115173566 115173751 -34343286 - B3 SINE B2 -8 208 5 3 1463 720 170 0 0 chr6 115173776 115173911 -34343126 + GA-rich Low_complexity Low_complexity 2 136 0 3 1463 207 307 27 90 chr6 115174065 115174176 -34342861 + MER91A DNA Tip100 58 161 -35 3 1463 857 214 67 5 chr6 115175585 115175778 -34341259 - CR1_Mam LINE CR1 -538 1666 1462 4 1463 295 188 98 24 chr6 115176135 115176217 -34340820 + PB1D10 SINE Alu 28 115 -2 4 1463 199 79 53 0 chr6 115176321 115176359 -34340678 + (TATAA)n Simple_repeat Simple_repeat 4 43 0 4 1463 660 194 60 0 chr6 115176372 115176506 -34340531 + B3A SINE B2 1 142 -56 4 1463 423 0 0 0 chr6 115176528 115176575 -34340462 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1463 480 35 0 0 chr6 115176575 115176632 -34340405 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1463 222 37 0 0 chr6 115177273 115177300 -34339737 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1463 412 280 15 29 chr6 115177366 115177502 -34339535 + RSINE1 SINE B4 14 147 -18 4 1463 531 0 0 0 chr6 115177813 115177872 -34339165 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1463 225 0 0 0 chr6 115177872 115177896 -34339141 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1463 8630 31 0 0 chr6 115178778 115179865 -34337172 - L1Md_T LINE L1 0 6582 5496 4 1463 4140 46 0 0 chr6 115179863 115180359 -34336678 + L1Md_T LINE L1 5043 5538 -345 4 1463 183 42 0 0 chr6 115180629 115180653 -34336384 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 4 1463 284 288 15 0 chr6 115180653 115180719 -34336318 - PB1 SINE Alu -12 115 49 4 1463 403 274 8 17 chr6 115182771 115182890 -34334147 + CR1_Mam LINE CR1 48 165 -2039 4 1463 189 0 0 0 chr6 115183198 115183219 -34333818 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1463 1104 52 8 0 chr6 115183220 115183354 -34333683 + B1_Mus1 SINE Alu 2 136 -12 4 1463 189 0 0 0 chr6 115183355 115183376 -34333661 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1463 3385 77 9 0 chr6 115183384 115183836 -34333201 - L1_Mus4 LINE L1 -12 6624 6169 4 1463 415 45 30 0 chr6 115184331 115184397 -34332640 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1463 4980 220 90 11 chr6 115184413 115185517 -34331520 - Lx6 LINE L1 -4 7456 6266 4 1463 282 29 0 0 chr6 115185696 115185731 -34331306 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 4 1463 254 29 0 28 chr6 115185732 115185768 -34331269 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1463 340 338 45 8 chr6 115185823 115185957 -34331080 - MIR3 SINE MIR -64 144 6 4 1463 240 35 0 0 chr6 115186449 115186478 -34330559 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1463 443 227 137 23 chr6 115186633 115186764 -34330273 - B1_Mur2 SINE Alu -1 148 3 4 1463 381 284 34 8 chr6 115190017 115190134 -34326903 - MIRb SINE MIR -64 204 85 4 1463 186 43 0 0 chr6 115191860 115191883 -34325154 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1463 423 0 0 0 chr6 115192904 115192951 -34324086 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1463 351 230 147 26 chr6 115193731 115193847 -34323190 - B1F SINE Alu -2 147 18 4 1463 345 245 128 40 chr6 115193847 115193880 -34323157 - ID_B1 SINE B4 -2 222 61 4 1463 24 32 0 0 chr6 115196747 115196778 -34320259 + AT_rich Low_complexity Low_complexity 1 31 0 4 1463 438 224 8 72 chr6 115196842 115196853 -34320184 - PB1D10 SINE Alu 0 117 108 4 1463 194 0 0 37 chr6 115196853 115196880 -34320157 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1463 438 224 8 72 chr6 115196880 115196993 -34320044 - PB1D10 SINE Alu -10 107 1 4 1463 451 269 10 0 chr6 115197767 115197871 -34319166 + PB1D10 SINE Alu 10 114 -3 4 1463 283 243 0 14 chr6 115197918 115197989 -34319048 + ID4 SINE ID 2 71 -12 4 1463 440 242 11 0 chr6 115198316 115198407 -34318630 - B3 SINE B2 -124 92 1 4 1463 321 26 0 0 chr6 115200096 115200134 -34316903 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 4 1463 346 286 0 0 chr6 115200942 115201019 -34316018 - ID4 SINE ID -3 80 4 4 1463 198 0 0 0 chr6 115202088 115202110 -34314927 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1463 228 35 0 0 chr6 115202538 115202567 -34314470 + (G)n Simple_repeat Simple_repeat 1 29 0 4 1463 218 312 21 21 chr6 115203032 115203127 -34313910 - MIR3 SINE MIR -27 181 87 4 1463 213 262 118 12 chr6 115203711 115203796 -34313241 + MIR3 SINE MIR 64 157 -51 4 1463 24 32 0 0 chr6 115203796 115203827 -34313210 + AT_rich Low_complexity Low_complexity 1 31 0 4 1463 755 251 40 0 chr6 115203906 115204081 -34312956 - B3A SINE B2 -16 182 1 4 1463 510 98 0 0 chr6 115204749 115204831 -34312206 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1463 230 349 86 29 chr6 115204920 115205200 -34311837 + Charlie4a DNA MER1_type 2 297 -211 4 1463 240 254 39 102 chr6 115205212 115205339 -34311698 + Charlie4a DNA MER1_type 356 474 -34 4 1463 186 219 0 0 chr6 115205946 115206010 -34311027 + CT-rich Low_complexity Low_complexity 1 64 0 4 1463 1080 64 0 0 chr6 115206010 115206151 -34310886 + (TG)n Simple_repeat Simple_repeat 1 141 0 4 1463 198 0 0 0 chr6 115206724 115206746 -34310291 + (TCTCTG)n Simple_repeat Simple_repeat 3 24 0 4 1463 841 141 0 0 chr6 115206755 115206883 -34310154 - B1_Mus2 SINE Alu -14 133 6 4 1463 761 277 115 22 chr6 115207092 115207415 -34309622 - L1MA4A LINE L1 -1671 5973 5585 4 1463 210 105 0 0 chr6 115207415 115207453 -34309584 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1463 761 277 105 21 chr6 115207453 115207522 -34309515 - L1MA4A LINE L1 -654 5649 5516 4 1463 600 213 21 35 chr6 115207523 115207664 -34309373 - RSINE1 SINE B4 -25 140 2 4 1463 4095 288 72 56 chr6 115207754 115209048 -34307989 - L1MA4A LINE L1 -1098 5045 3774 4 1463 612 306 45 0 chr6 115209048 115209205 -34307832 - RSINE1 SINE B4 0 165 2 4 1463 4095 288 72 56 chr6 115209205 115210305 -34306732 - L1MA4A LINE L1 -2370 3773 2612 4 1463 248 318 35 0 chr6 115210905 115210990 -34306047 - MIR SINE MIR -87 121 34 4 1463 1194 81 1 1 chr6 115212027 115212207 -34304830 + B2_Mm2 SINE B2 1 182 -11 4 182 1161 68 7 0 chr6 115212207 115212353 -34304684 + B1_Mus1 SINE Alu 2 148 0 4 1464 443 239 142 0 chr6 115215565 115215678 -34301359 + B1_Mur1 SINE Alu 1 129 -20 4 1464 218 234 125 0 chr6 115216163 115216227 -34300810 + MIR3 SINE MIR 109 180 -28 4 1464 564 312 128 15 chr6 115216400 115216735 -34300302 - MER77 LTR ERVL -58 549 177 4 1464 639 303 27 54 chr6 115218749 115218972 -34298065 + ID_B1 SINE B4 7 223 -1 4 1464 601 260 158 11 chr6 115219364 115219547 -34297490 + B3 SINE B2 1 210 -6 4 1464 243 146 0 0 chr6 115228201 115228242 -34288795 + (TCC)n Simple_repeat Simple_repeat 2 42 0 4 1464 1296 138 66 5 chr6 115229145 115229356 -34287681 + URR1B DNA MER1_type 1 224 -1 4 1464 387 0 0 0 chr6 115230108 115230151 -34286886 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1464 539 253 119 6 chr6 115230331 115230490 -34286547 + ID_B1 SINE B4 48 224 0 4 1464 769 316 61 22 chr6 115233074 115233433 -34283604 - MER34A LTR ERV1 -198 373 1 4 1464 329 294 202 6 chr6 115233570 115233748 -34283289 - MIR SINE MIR -7 255 43 4 1464 712 298 58 22 chr6 115233749 115234027 -34283010 + B4A SINE B4 1 288 -4 4 1464 228 190 48 22 chr6 115235498 115235585 -34281452 - MIRm SINE MIR -115 161 66 4 1464 263 236 142 16 chr6 115235731 115235841 -34281196 + MIRb SINE MIR 19 135 -127 4 1464 330 26 0 0 chr6 115236197 115236236 -34280801 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1464 414 213 24 0 chr6 115236314 115236414 -34280623 - B1_Mus1 SINE Alu -5 145 37 4 1464 21 0 0 0 chr6 115236420 115236441 -34280596 + AT_rich Low_complexity Low_complexity 1 21 0 4 1464 529 278 45 65 chr6 115236448 115236648 -34280389 - B3A SINE B2 0 198 3 4 1464 530 273 67 18 chr6 115237853 115238017 -34279020 + ID_B1 SINE B4 53 224 0 4 1464 390 287 54 27 chr6 115238401 115238548 -34278489 + MIRb SINE MIR 73 223 -45 4 1464 658 243 72 7 chr6 115238739 115238892 -34278145 - RSINE1 SINE B4 0 165 3 4 1464 234 0 0 0 chr6 115239062 115239088 -34277949 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1464 913 57 0 8 chr6 115239088 115239205 -34277832 - B1_Mus2 SINE Alu -7 140 24 4 1464 392 97 16 0 chr6 115239307 115239369 -34277668 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1464 651 228 19 39 chr6 115239374 115239529 -34277508 - RSINE1 SINE B4 -12 153 2 4 1464 308 321 102 0 chr6 115239545 115239682 -34277355 - B4A SINE B4 -141 151 1 4 1464 654 235 89 132 chr6 115239717 115240021 -34277016 - B4 SINE B4 0 292 2 4 1464 201 254 17 17 chr6 115240460 115240520 -34276517 - L2a LINE L2 -78 3348 3289 4 1464 316 213 49 74 chr6 115241196 115241277 -34275760 + ID4 SINE ID 2 80 -3 4 1464 237 261 68 0 chr6 115242335 115242353 -34274684 - BC1_Mm scRNA scRNA -58 94 6 4 1464 271 261 15 0 chr6 115242353 115242418 -34274619 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 4 1464 185 0 40 0 chr6 115242438 115242463 -34274574 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 4 1464 538 238 52 23 chr6 115244431 115244605 -34272432 + B3 SINE B2 15 191 -4 4 1464 645 188 62 0 chr6 115244682 115244810 -34272227 + B1_Mus2 SINE Alu 1 136 -11 4 1464 654 271 91 0 chr6 115245217 115245438 -34271599 + MER2 DNA MER2_type 80 320 -25 4 1464 327 305 71 26 chr6 115246902 115247128 -34269909 - L1M5 LINE L1 -1554 4592 4357 4 1464 430 254 37 7 chr6 115247130 115247265 -34269772 + B1F SINE Alu 1 139 -10 4 1464 286 314 0 14 chr6 115247305 115247376 -34269661 + ID4 SINE ID 14 83 0 4 1464 462 301 111 100 chr6 115247377 115247943 -34269094 - L1M5 LINE L1 -1777 4369 3782 4 1464 1153 160 75 0 chr6 115247943 115248143 -34268894 + B3 SINE B2 1 215 -1 4 1464 462 301 111 100 chr6 115248143 115248509 -34268528 - L1M5 LINE L1 -2365 3781 3409 4 1464 1660 29 19 5 chr6 115248509 115248716 -34268321 - L1Md_F3 LINE L1 0 6584 6375 4 1464 462 301 111 100 chr6 115248716 115248779 -34268258 - L1M5 LINE L1 -2738 3408 3362 4 1464 428 294 36 7 chr6 115248975 115249112 -34267925 - RSINE1 SINE B4 -19 146 6 4 1464 510 318 113 19 chr6 115249361 115249627 -34267410 - L1MB7 LINE L1 -8 6349 6059 4 1464 820 278 28 42 chr6 115249640 115249929 -34267108 - B4A SINE B4 -4 288 4 4 1464 343 183 11 99 chr6 115249985 115250076 -34266961 - PB1D10 SINE Alu -1 116 34 5 1464 291 205 63 13 chr6 115250099 115250178 -34266859 - L1MB8 LINE L1 -271 5907 5825 5 1464 334 230 265 16 chr6 115250266 115250455 -34266582 - MER2 DNA MER2_type -14 331 96 5 1464 733 255 0 0 chr6 115250969 115251114 -34265923 - B1_Mur1 SINE Alu 0 149 5 5 1464 313 250 14 0 chr6 115251188 115251260 -34265777 - ID4_ SINE ID -1 82 10 5 1464 200 242 45 15 chr6 115251559 115251626 -34265411 - MIRc SINE MIR -143 125 57 5 1464 259 289 33 76 chr6 115251639 115251807 -34265230 + MIR SINE MIR 18 184 -84 5 1464 412 300 49 15 chr6 115252130 115252333 -34264704 - L1MB7 LINE L1 -1313 5006 4797 4 1464 19240 50 2 1 chr6 115252329 115255383 -34261654 - L1Md_F2 LINE L1 0 6582 3527 5 1464 21 0 0 0 chr6 115255553 115255574 -34261463 + AT_rich Low_complexity Low_complexity 1 21 0 5 1464 2443 131 13 0 chr6 115255654 115256027 -34261010 - ORR1C1 LTR MaLR 0 378 1 5 1464 240 228 176 42 chr6 115256056 115256175 -34260862 - L1M5 LINE L1 -614 5564 5430 5 1464 251 219 143 24 chr6 115256211 115256302 -34260735 - ORR1E LTR MaLR -14 365 276 5 1464 281 266 124 0 chr6 115256366 115256479 -34260558 - ORR1E LTR MaLR -204 155 29 5 1464 722 267 0 0 chr6 115256655 115256805 -34260232 - RSINE1 SINE B4 -13 152 3 5 1464 27 29 0 0 chr6 115256808 115256842 -34260195 + AT_rich Low_complexity Low_complexity 1 34 0 5 1464 228 246 18 0 chr6 115256851 115256908 -34260129 - L1MB7 LINE L1 -3869 2450 2393 4 1464 298 222 10 10 chr6 115257103 115257209 -34259828 - L1MB7 LINE L1 -4030 2370 2265 4 1464 303 281 41 10 chr6 115257249 115257346 -34259691 - PB1D10 SINE Alu -17 100 1 5 1464 615 130 0 0 chr6 115258449 115258549 -34258488 + (GA)n Simple_repeat Simple_repeat 1 100 0 5 1464 318 230 308 20 chr6 115258693 115258946 -34258091 + L1M4c LINE L1 1276 1601 -4783 5 1464 928 302 88 35 chr6 115259217 115260203 -34256834 + L1M4c LINE L1 1965 3003 -3379 5 1464 377 282 45 0 chr6 115260270 115260426 -34256611 + L1M4c LINE L1 3200 3362 -3020 5 1464 279 253 0 37 chr6 115260443 115260455 -34256582 - ID_B1 SINE B4 -51 173 95 5 1464 300 224 0 43 chr6 115260455 115260525 -34256512 - PB1D10 SINE Alu -37 80 14 5 1464 252 218 0 0 chr6 115260788 115260843 -34256194 - ID4 SINE ID -28 55 1 5 1464 226 204 41 0 chr6 115261106 115261155 -34255882 - L1MEg2 LINE L1 -5466 986 936 5 1464 357 116 0 0 chr6 115261317 115261386 -34255651 + (TCTG)n Simple_repeat Simple_repeat 2 70 0 5 1464 646 241 7 0 chr6 115261408 115261549 -34255488 - RSINE1 SINE B4 -22 143 2 5 1464 489 254 8 26 chr6 115261627 115261744 -34255293 + ID_B1 SINE B4 82 196 -28 5 1464 315 0 0 0 chr6 115262269 115262304 -34254733 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1464 252 0 0 0 chr6 115263097 115263125 -34253912 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1464 486 254 15 23 chr6 115263687 115263820 -34253217 + RSINE1 SINE B4 33 164 -1 5 1464 498 75 0 0 chr6 115263824 115263891 -34253146 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 5 1464 345 209 0 0 chr6 115264221 115264288 -34252749 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 5 1464 2474 66 3 3 chr6 115264616 115264935 -34252102 - L1_Mus2 LINE L1 0 6566 6248 5 1464 275 347 16 39 chr6 115265000 115265129 -34251908 - Tigger15a DNA TcMar -554 161 36 5 1464 567 62 0 0 chr6 115265342 115265422 -34251615 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1464 517 247 66 70 chr6 115265424 115265637 -34251400 - Tigger7 DNA MER2_type -26 2465 2255 5 1464 503 277 7 7 chr6 115265672 115265810 -34251227 - ID_B1 SINE B4 -2 222 85 5 1464 1219 278 71 21 chr6 115265821 115266129 -34250908 - Tigger7 DNA MER2_type -2080 411 84 5 1464 418 272 9 9 chr6 115266129 115266244 -34250793 - PB1D10 SINE Alu -1 116 2 5 1464 1219 278 71 21 chr6 115266244 115266314 -34250723 - Tigger7 DNA MER2_type -2408 83 14 5 1464 22 80 0 0 chr6 115266468 115266518 -34250519 + AT_rich Low_complexity Low_complexity 1 50 0 5 1464 482 314 81 66 chr6 115269934 115270132 -34246905 + MIR SINE MIR 37 241 -27 5 1464 1165 263 7 7 chr6 115270138 115270410 -34246627 + B4A SINE B4 1 272 -20 5 1464 581 283 52 37 chr6 115270489 115270680 -34246357 - MLT1B LTR MaLR 0 390 197 5 1464 202 51 77 0 chr6 115270687 115270726 -34246311 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 5 1464 336 266 43 0 chr6 115270733 115270827 -34246210 - MLT1B LTR MaLR -181 209 112 5 1464 441 0 0 0 chr6 115270882 115270931 -34246106 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1464 250 169 41 110 chr6 115270950 115271023 -34246014 - MLT1B LTR MaLR -275 115 48 5 1464 534 271 45 27 chr6 115271206 115271368 -34245669 - L1MB3 LINE L1 -3 6177 6008 5 1464 679 272 79 22 chr6 115271365 115271594 -34245443 + L1MB3 LINE L1 5808 6049 -134 5 1464 189 0 0 0 chr6 115272283 115272304 -34244733 + (TC)n Simple_repeat Simple_repeat 1 21 0 5 1464 351 0 0 0 chr6 115272304 115272342 -34244695 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1464 687 212 7 7 chr6 115273333 115273471 -34243566 - B1F2 SINE Alu -6 143 6 5 1464 495 312 0 42 chr6 115273533 115273547 -34243490 - RSINE1 SINE B4 -2 163 151 5 1464 186 43 0 0 chr6 115273547 115273570 -34243467 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 5 1464 495 312 0 42 chr6 115273570 115273722 -34243315 - RSINE1 SINE B4 -15 150 4 5 1464 282 69 17 33 chr6 115273723 115273783 -34243254 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 5 1464 237 196 118 0 chr6 115274311 115274362 -34242675 + tRNA-Ala-GCY_ tRNA tRNA 12 68 -7 5 1464 946 146 14 0 chr6 115274564 115274708 -34242329 + B1_Mus2 SINE Alu 1 146 -1 5 1464 26 0 0 0 chr6 115274723 115274749 -34242288 + AT_rich Low_complexity Low_complexity 1 26 0 5 1464 762 156 0 0 chr6 115274806 115274941 -34242096 + GA-rich Low_complexity Low_complexity 1 135 0 5 1464 285 208 15 15 chr6 115275411 115275595 -34241442 + CT-rich Low_complexity Low_complexity 1 184 0 5 1464 22 0 0 0 chr6 115275775 115275797 -34241240 + AT_rich Low_complexity Low_complexity 1 22 0 5 1464 206 32 0 31 chr6 115276683 115276715 -34240322 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 5 1464 280 272 54 11 chr6 115277273 115277366 -34239671 + PB1D7 SINE Alu 24 120 0 5 1464 360 218 12 49 chr6 115277685 115277767 -34239270 + ID4_ SINE ID 2 80 -3 5 1464 913 249 28 20 chr6 115277898 115278152 -34238885 + Lx8 LINE L1 6976 7231 -242 5 1464 279 272 117 0 chr6 115278465 115278568 -34238469 - HAL1 LINE L1 -298 2209 2095 5 1464 372 306 81 54 chr6 115278639 115278936 -34238101 - HAL1 LINE L1 -538 1969 1665 5 1464 455 319 80 76 chr6 115279358 115279819 -34237218 - L1MC4 LINE L1 -394 7648 7186 5 1464 315 291 42 14 chr6 115280378 115280521 -34236516 - HAL1 LINE L1 -1301 1206 1060 5 1464 702 105 0 0 chr6 115280617 115280722 -34236315 + (TCTA)n Simple_repeat Simple_repeat 3 107 0 5 1464 1056 254 32 85 chr6 115281182 115281594 -34235443 - MTE2a LTR MaLR 0 419 16 5 1464 358 319 120 35 chr6 115281599 115281882 -34235155 - HAL1 LINE L1 -2197 310 4 5 1464 757 235 83 20 chr6 115282142 115282346 -34234691 + B4A SINE B4 1 217 -75 5 1464 245 213 0 0 chr6 115282346 115282389 -34234648 + B4A SINE B4 188 230 -62 5 1464 512 252 158 8 chr6 115282389 115282509 -34234528 + RSINE1 SINE B4 3 140 -25 5 1464 204 40 0 0 chr6 115282520 115282545 -34234492 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1464 807 181 0 0 chr6 115282701 115282839 -34234198 + B1_Mur4 SINE Alu 6 143 -7 5 1464 252 86 0 0 chr6 115282841 115282876 -34234161 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1464 560 200 341 24 chr6 115283714 115283878 -34233159 + B3 SINE B2 1 216 0 5 1464 267 325 17 0 chr6 115283904 115284021 -34233016 + L1MA7 LINE L1 3806 3924 -2216 5 1464 996 273 145 36 chr6 115284035 115284912 -34232125 + L1MA7 LINE L1 5152 6137 -163 5 1464 369 252 59 112 chr6 115284929 115284954 -34232083 + B4 SINE B4 75 218 -74 5 1464 588 221 47 0 chr6 115284954 115285081 -34231956 + B1_Mur2 SINE Alu 9 141 -8 5 1464 414 85 0 0 chr6 115285082 115285141 -34231896 + (GAAAA)n Simple_repeat Simple_repeat 1 59 0 5 1464 1174 164 49 53 chr6 115285380 115285606 -34231431 + URR1B DNA MER1_type 1 225 0 5 1464 213 288 13 40 chr6 115285940 115286016 -34231021 + ID4 SINE ID 1 74 -9 5 1464 582 241 41 41 chr6 115286091 115286238 -34230799 - B1_Mur1 SINE Alu -2 147 1 5 1464 322 362 35 0 chr6 115286924 115287098 -34229939 + Charlie17a DNA MER1_type 5 184 -35 5 1464 378 0 0 0 chr6 115287535 115287577 -34229460 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1464 994 146 7 0 chr6 115287744 115287888 -34229149 + B1_Mur4 SINE Alu 6 150 0 5 1464 684 198 87 0 chr6 115288095 115288221 -34228816 - B1_Mur4 SINE Alu -5 145 9 5 1464 31 26 0 0 chr6 115288315 115288353 -34228684 + AT_rich Low_complexity Low_complexity 1 38 0 5 1464 250 136 0 43 chr6 115288511 115288557 -34228480 + L1M3 LINE L1 5775 5818 -362 5 1464 614 267 29 22 chr6 115288570 115288708 -34228329 - RSINE1 SINE B4 -24 141 3 5 1464 294 271 14 14 chr6 115288732 115288803 -34228234 + ID_B1 SINE B4 87 157 -67 5 1464 242 203 31 0 chr6 115288804 115288868 -34228169 + A-rich Low_complexity Low_complexity 4 69 0 5 1464 338 309 0 0 chr6 115289225 115289322 -34227715 - L1MA8 LINE L1 -25 6287 6191 5 1464 223 250 105 32 chr6 115289336 115289431 -34227606 + PB1D7 SINE Alu 19 120 0 5 1464 457 232 84 19 chr6 115289569 115289723 -34227314 - L1MA8 LINE L1 -352 5939 5776 5 1464 229 273 25 49 chr6 115289725 115289806 -34227231 + L1M2 LINE L1 5458 5536 -764 5 1464 319 214 200 25 chr6 115289867 115289987 -34227050 + L1M2 LINE L1 5650 5790 -510 5 1464 429 187 148 9 chr6 115290343 115290451 -34226586 + L1M4 LINE L1 5637 5759 -419 5 1464 299 256 0 68 chr6 115290772 115290860 -34226177 + MER53 DNA hAT 89 170 -23 5 1464 1465 181 60 4 chr6 115290864 115291131 -34225906 - MTD LTR MaLR -8 411 130 5 1464 1033 161 116 16 chr6 115291850 115291878 -34225159 - B3 SINE B2 -8 208 183 5 1464 432 0 0 0 chr6 115291878 115291926 -34225111 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1464 1033 161 116 16 chr6 115291926 115292086 -34224951 - B3 SINE B2 -34 182 2 5 1464 297 179 52 0 chr6 115292918 115292985 -34224052 + B3A SINE B2 33 107 -109 5 1464 279 0 0 0 chr6 115293053 115293084 -34223953 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1464 766 255 25 0 chr6 115293085 115293242 -34223795 - B3A SINE B2 -34 164 4 5 1464 212 319 0 0 chr6 115293293 115293362 -34223675 - PB1D10 SINE Alu -1 116 48 5 1464 180 0 0 0 chr6 115293586 115293606 -34223431 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1464 21 0 0 0 chr6 115293962 115293983 -34223054 + AT_rich Low_complexity Low_complexity 1 21 0 5 1464 198 0 0 0 chr6 115294735 115294757 -34222280 + (CGGGG)n Simple_repeat Simple_repeat 1 22 0 5 1464 297 248 12 67 chr6 115296211 115296375 -34220662 + ORR1B1-int LTR MaLR 600 754 -755 5 1464 432 153 0 162 chr6 115296263 115296380 -34220657 + MT2B LTR ERVL 167 264 -337 6 1464 1117 36 0 14 chr6 115296276 115296417 -34220620 + B1_Mm SINE Alu 9 147 0 6 1464 203 61 30 0 chr6 115296495 115296528 -34220509 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1464 307 257 128 7 chr6 115297058 115297199 -34219838 + L1MA5 LINE L1 6139 6296 -4 6 1464 254 375 0 10 chr6 115297213 115297310 -34219727 + PB1D10 SINE Alu 21 116 -1 6 1464 289 260 26 13 chr6 115297699 115297777 -34219260 - ID4 SINE ID -4 79 1 6 1464 1121 62 0 0 chr6 115298298 115298428 -34218609 + B1_Mm SINE Alu 5 134 -13 6 1464 225 0 0 0 chr6 115298429 115298454 -34218583 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6 1464 898 225 91 51 chr6 115298601 115298854 -34218183 + Lx5 LINE L1 6788 7050 0 6 1464 492 192 0 0 chr6 115299075 115299174 -34217863 + GA-rich Low_complexity Low_complexity 2 100 0 6 1464 404 255 12 3 chr6 115299211 115299302 -34217735 + B1F SINE Alu 1 91 -58 6 1464 239 346 12 36 chr6 115299233 115299317 -34217720 + ID_B1 SINE B4 104 185 -39 6 1464 335 273 9 26 chr6 115299504 115299617 -34217420 + CT-rich Low_complexity Low_complexity 5 115 0 6 1464 227 343 40 0 chr6 115299640 115299739 -34217298 - PB1D10 SINE Alu -12 105 3 6 1464 3531 56 2 0 chr6 115300460 115300871 -34216166 - L1_Mus1 LINE L1 0 6567 6156 6 1464 189 107 0 0 chr6 115300881 115300909 -34216128 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1464 675 218 62 37 chr6 115300942 115301104 -34215933 + B3A SINE B2 12 177 -21 6 1464 232 104 0 59 chr6 115301263 115301314 -34215723 + GA-rich Low_complexity Low_complexity 3 50 0 6 1464 354 265 20 20 chr6 115301912 115302012 -34215025 + PB1D9 SINE Alu 21 120 0 6 1464 351 0 0 0 chr6 115302054 115302093 -34214944 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1464 951 156 102 0 chr6 115302731 115302917 -34214120 - URR1B DNA MER1_type -1 224 20 6 1464 559 263 69 21 chr6 115302921 115303154 -34213883 - L1MB7 LINE L1 -122 6062 5819 6 1464 409 281 27 148 chr6 115304289 115304442 -34212595 - Lx8 LINE L1 0 7473 7345 6 1464 697 199 21 14 chr6 115304442 115304585 -34212452 - B1_Mur2 SINE Alu -2 147 4 6 1464 409 281 27 148 chr6 115304585 115304694 -34212343 - Lx8 LINE L1 -129 7344 7243 6 1464 189 0 0 0 chr6 115304956 115304977 -34212060 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1464 237 83 0 0 chr6 115304977 115305013 -34212024 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1464 562 279 56 19 chr6 115305024 115305185 -34211852 - B3A SINE B2 -26 172 6 6 1464 403 242 55 0 chr6 115305781 115305872 -34211165 - PB1D7 SINE Alu -5 115 20 6 1464 216 0 0 0 chr6 115306063 115306087 -34210950 + (TA)n Simple_repeat Simple_repeat 1 24 0 6 1464 261 0 0 0 chr6 115306087 115306115 -34210922 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1464 458 260 40 0 chr6 115306778 115306878 -34210159 + L2b LINE L2 3272 3375 0 6 1464 436 236 70 57 chr6 115306981 115307138 -34209899 - MER112 DNA MER1_type -95 166 8 6 1464 486 178 33 11 chr6 115307598 115307689 -34209348 + PB1D7 SINE Alu 3 95 -25 6 1464 459 92 0 0 chr6 115307712 115307777 -34209260 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 1464 895 245 72 0 chr6 115307803 115308143 -34208894 + L1MB7 LINE L1 5191 5554 -624 6 1464 797 250 119 14 chr6 115308293 115308502 -34208535 + B4A SINE B4 2 233 -59 6 1464 563 313 37 58 chr6 115308502 115308692 -34208345 + B3 SINE B2 2 187 -29 6 1464 406 260 0 0 chr6 115308693 115308770 -34208267 + B4A SINE B4 216 292 0 6 1464 22 35 0 0 chr6 115308853 115308882 -34208155 + AT_rich Low_complexity Low_complexity 1 29 0 6 1464 1018 272 63 26 chr6 115308979 115309326 -34207711 + L1MB7 LINE L1 5816 6175 -9 6 1464 263 134 53 107 chr6 115309337 115309412 -34207625 + PB1D10 SINE Alu 40 110 -7 6 1464 1225 75 0 0 chr6 115309671 115309818 -34207219 + B1_Mus1 SINE Alu 2 148 0 6 1464 610 193 129 0 chr6 115310352 115310492 -34206545 + B3A SINE B2 3 160 -38 6 1464 237 119 0 0 chr6 115310571 115310613 -34206424 + (TAAAAA)n Simple_repeat Simple_repeat 1 42 0 6 1464 317 119 19 47 chr6 115310647 115310753 -34206284 + (TA)n Simple_repeat Simple_repeat 1 103 0 6 1464 25 90 0 0 chr6 115310898 115310965 -34206072 + GC_rich Low_complexity Low_complexity 1 67 0 6 1464 28 0 0 0 chr6 115314621 115314649 -34202388 + AT_rich Low_complexity Low_complexity 1 28 0 6 1464 36 0 0 0 chr6 115314726 115314762 -34202275 + AT_rich Low_complexity Low_complexity 1 36 0 6 1464 324 0 0 0 chr6 115315961 115315997 -34201040 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1464 1094 214 15 5 chr6 115316627 115316824 -34200213 - B3 SINE B2 -17 199 1 6 1464 403 207 189 0 chr6 115317862 115317973 -34199064 + RSINE1 SINE B4 3 134 -31 6 1464 343 228 9 90 chr6 115318954 115319065 -34197972 + L2c LINE L2 3282 3383 -4 6 1464 677 231 118 28 chr6 115319070 115319248 -34197789 + ID_B1 SINE B4 2 195 -29 6 1464 224 235 39 0 chr6 115319672 115319723 -34197314 + ID4 SINE ID 4 56 -27 6 1464 624 239 0 0 chr6 115319943 115320052 -34196985 + PB1D10 SINE Alu 1 109 -8 6 1464 228 284 106 80 chr6 115320347 115320584 -34196453 - CR1_Mam LINE CR1 -1784 420 178 6 1464 206 259 19 0 chr6 115320724 115320778 -34196259 + (CATA)n Simple_repeat Simple_repeat 4 58 0 6 1464 482 217 19 6 chr6 115320883 115321045 -34195992 + (TA)n Simple_repeat Simple_repeat 2 165 0 6 1464 226 270 16 16 chr6 115321314 115321378 -34195659 - ID4 SINE ID -19 64 1 6 1464 721 212 30 0 chr6 115322911 115323043 -34193994 - B1_Mus2 SINE Alu -7 140 5 6 1464 235 338 0 37 chr6 115323953 115324034 -34193003 - ID2 SINE ID -62 90 13 6 1464 421 226 11 11 chr6 115324073 115324167 -34192870 + L1MA5 LINE L1 6207 6300 0 6 1464 298 345 25 8 chr6 115324990 115325110 -34191927 + L3 LINE CR1 4242 4363 -126 6 1464 423 0 0 0 chr6 115325377 115325424 -34191613 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1464 288 242 0 0 chr6 115325424 115325486 -34191551 - tRNA-Ala-GCY_ tRNA tRNA -9 66 5 6 1464 799 269 148 17 chr6 115325790 115326081 -34190956 - Lx8 LINE L1 -6 7467 7139 6 1464 241 220 60 0 chr6 115326484 115326534 -34190503 + L2a LINE L2 3365 3417 -9 6 1464 341 333 0 9 chr6 115326858 115326967 -34190070 + CT-rich Low_complexity Low_complexity 3 110 0 6 1464 2553 133 40 5 chr6 115327333 115327732 -34189305 - MTC LTR MaLR -8 413 1 6 1464 186 308 153 32 chr6 115327842 115327966 -34189071 + L2a LINE L2 3277 3415 -11 6 1464 1293 61 0 0 chr6 115328191 115328338 -34188699 + B1_Mm SINE Alu 1 147 0 6 1464 232 307 23 0 chr6 115328432 115328520 -34188517 - MIRb SINE MIR -5 263 174 6 1464 891 274 76 0 chr6 115328557 115328754 -34188283 + ID_B1 SINE B4 8 219 -5 6 1464 940 172 7 0 chr6 115329201 115329346 -34187691 + B1_Mus1 SINE Alu 3 148 0 6 1464 207 100 0 0 chr6 115329346 115329376 -34187661 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1464 569 224 109 0 chr6 115329625 115329781 -34187256 - MER2 DNA MER2_type -81 264 92 6 1464 353 312 21 31 chr6 115329851 115329947 -34187090 - RSINE1 SINE B4 -22 143 49 6 1464 22 0 0 0 chr6 115329987 115330009 -34187028 + AT_rich Low_complexity Low_complexity 1 22 0 6 1464 261 183 0 0 chr6 115330213 115330273 -34186764 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1464 332 335 65 0 chr6 115330421 115330576 -34186461 + MER63C DNA AcHobo 1 165 -765 6 1464 185 0 0 39 chr6 115330964 115330990 -34186047 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1464 308 200 0 0 chr6 115331156 115331211 -34185826 - ID4_ SINE ID -27 56 2 6 1464 510 275 92 26 chr6 115331451 115331469 -34185568 - RSINE1 SINE B4 0 165 149 6 1464 387 0 0 0 chr6 115331469 115331512 -34185525 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1464 522 0 0 0 chr6 115331512 115331569 -34185468 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1464 510 275 92 26 chr6 115331569 115331702 -34185335 - RSINE1 SINE B4 -17 148 4 6 1464 40 49 0 0 chr6 115333774 115333835 -34183202 + AT_rich Low_complexity Low_complexity 1 61 0 6 1464 1495 300 132 31 chr6 115334416 115335548 -34181489 + L1MC4a LINE L1 6613 7859 -23 6 1464 21 0 0 0 chr6 115335583 115335604 -34181433 + AT_rich Low_complexity Low_complexity 1 21 0 6 1464 336 231 25 13 chr6 115335604 115335683 -34181354 - ID4_ SINE ID -1 82 3 6 1464 213 65 0 0 chr6 115336222 115336253 -34180784 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1464 310 215 170 109 chr6 115336674 115336904 -34180133 + L1MB2 LINE L1 5927 6170 -1 6 1464 414 252 139 9 chr6 115337605 115337783 -34179254 - B3A SINE B2 -3 190 2 6 1464 410 287 34 20 chr6 115337784 115337930 -34179107 - B1F1 SINE Alu 0 149 2 6 1464 475 252 30 0 chr6 115339012 115339111 -34177926 + PB1D10 SINE Alu 9 110 -7 6 1464 692 185 247 6 chr6 115339144 115339282 -34177755 + B3 SINE B2 1 181 -35 6 1464 423 0 0 0 chr6 115339282 115339329 -34177708 + (CATA)n Simple_repeat Simple_repeat 4 50 0 6 1464 692 185 247 6 chr6 115339329 115339364 -34177673 + B3 SINE B2 182 215 -1 6 1464 23 33 0 0 chr6 115339618 115339648 -34177389 + AT_rich Low_complexity Low_complexity 1 30 0 6 1464 192 284 6 0 chr6 115340658 115340713 -34176324 + MIR SINE MIR 94 150 -58 6 1464 270 239 90 90 chr6 115341356 115341434 -34175603 + ID4_ SINE ID 1 78 -5 6 1464 3017 67 5 0 chr6 115342294 115342682 -34174355 + L1_Mus1 LINE L1 6155 6544 -23 6 1464 393 39 0 0 chr6 115342836 115342887 -34174150 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1464 242 339 0 0 chr6 115342892 115342957 -34174080 - B4 SINE B4 -14 278 214 6 1464 433 215 31 55 chr6 115343021 115343149 -34173888 - RSINE1 SINE B4 -39 126 2 7 22 993 221 22 35 chr6 115343149 115343375 -34173662 - B4A SINE B4 -68 224 2 7 1465 198 0 0 0 chr6 115343729 115343751 -34173286 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 7 1465 441 223 31 21 chr6 115343752 115343848 -34173189 - B1F2 SINE Alu -13 136 40 7 1465 334 356 0 0 chr6 115343850 115343982 -34173055 + C-rich Low_complexity Low_complexity 6 137 0 7 1465 287 189 0 0 chr6 115343983 115344036 -34173001 - PB1D9 SINE Alu -66 54 2 7 1465 816 201 7 0 chr6 115344863 115345007 -34172030 - B1_Mur1 SINE Alu 0 149 5 7 1465 418 307 0 95 chr6 115345258 115345384 -34171653 + PB1D7 SINE Alu 18 149 0 7 1465 252 342 26 0 chr6 115345480 115345556 -34171481 + L2b LINE L2 3297 3374 -1 7 1465 489 17 0 0 chr6 115346854 115346912 -34170125 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 7 1465 953 284 110 23 chr6 115348032 115348558 -34168479 - L1MB4 LINE L1 0 6180 5609 7 1465 239 271 0 17 chr6 115349006 115349066 -34167971 - PB1D10 SINE Alu -40 77 19 7 1465 505 266 85 70 chr6 115349074 115349380 -34167657 - L1MB4 LINE L1 -571 5607 5285 7 1465 853 232 44 6 chr6 115349837 115349998 -34167039 + B3A SINE B2 2 167 -31 7 1465 375 23 0 0 chr6 115349998 115350042 -34166995 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1465 853 232 44 6 chr6 115350042 115350062 -34166975 + B3A SINE B2 168 190 -8 7 1465 184 326 64 69 chr6 115350834 115350974 -34166063 - L2 LINE L2 -874 2545 2409 7 1465 4658 80 46 5 chr6 115350974 115351643 -34165394 - Lx3C LINE L1 -1 6975 6279 7 1465 184 326 64 69 chr6 115351643 115351706 -34165331 - L2 LINE L2 -1011 2408 2343 7 1465 245 29 29 0 chr6 115351885 115351919 -34165118 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 7 1465 249 265 15 0 chr6 115351922 115351990 -34165047 - ID4_ SINE ID -7 76 8 7 1465 351 328 207 42 chr6 115352360 115352669 -34164368 - LTR31 LTR ERV1 -21 598 239 7 1465 226 300 11 200 chr6 115353018 115353368 -34163669 + RMER12 LTR ERVK 770 1053 -269 7 1465 1147 261 0 74 chr6 115353225 115353535 -34163502 - B4A SINE B4 -4 288 2 7 1465 221 237 0 17 chr6 115353595 115353612 -34163425 + (CTTG)n Simple_repeat Simple_repeat 1 17 0 7 1465 447 217 103 9 chr6 115353612 115353719 -34163318 - PB1D9 SINE Alu -3 117 1 7 1465 221 237 0 17 chr6 115353719 115353761 -34163276 + (CTTG)n Simple_repeat Simple_repeat 3 44 0 7 1465 609 160 9 0 chr6 115353875 115353981 -34163056 - URR1B DNA MER1_type 0 225 119 7 1465 370 217 23 35 chr6 115354734 115354835 -34162202 - PB1 SINE Alu 0 127 27 7 1465 220 211 0 0 chr6 115355465 115355503 -34161534 + polypurine Low_complexity Low_complexity 2 39 0 7 1465 282 262 23 175 chr6 115355640 115355669 -34161368 - B1F2 SINE Alu -2 115 89 7 1465 482 0 17 0 chr6 115355669 115355727 -34161310 + (TTTTG)n Simple_repeat Simple_repeat 1 59 0 7 1465 285 217 52 3 chr6 115355727 115355811 -34161226 - B1F SINE Alu -58 91 6 7 1465 267 81 27 0 chr6 115355894 115355931 -34161106 + tRNA-Met_ tRNA tRNA 1 38 -38 7 1465 347 320 45 30 chr6 115356678 115356810 -34160227 + MER94 DNA AcHobo 1 134 0 7 1465 218 150 125 0 chr6 115357708 115357748 -34159289 - ID4 SINE ID -33 50 6 7 1465 506 282 0 16 chr6 115357882 115358008 -34159029 - PB1 SINE Alu -3 124 1 7 1465 180 135 0 0 chr6 115358105 115358142 -34158895 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 7 1465 864 129 72 0 chr6 115358159 115358298 -34158739 - B1_Mur4 SINE Alu 0 150 2 7 1465 224 286 79 0 chr6 115358981 115359044 -34157993 - L2c LINE L2 0 3387 3320 7 1465 405 0 0 0 chr6 115359113 115359158 -34157879 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1465 234 301 102 31 chr6 115359455 115359469 -34157568 - B4A SINE B4 -60 232 97 7 1465 495 248 0 35 chr6 115359469 115359582 -34157455 - PB1D7 SINE Alu 0 120 12 7 1465 873 76 0 0 chr6 115360101 115360219 -34156818 + (GGGA)n Simple_repeat Simple_repeat 4 121 0 7 1465 226 283 17 0 chr6 115360915 115360975 -34156062 + tRNA-Ala-GCY_ tRNA tRNA 8 68 -7 7 1465 225 305 24 0 chr6 115360975 115360989 -34156048 + B4 SINE B4 32 89 -203 7 1465 789 259 5 159 chr6 115362786 115363006 -34154031 + B3A SINE B2 2 187 -8 7 1465 297 68 0 0 chr6 115363435 115363479 -34153558 + (TTG)n Simple_repeat Simple_repeat 2 45 0 7 1465 333 268 0 0 chr6 115364163 115364245 -34152792 - ID4_ SINE ID -1 82 1 7 1465 313 339 42 8 chr6 115364806 115364925 -34152112 + MIR SINE MIR 30 152 -56 7 1465 265 261 15 0 chr6 115365551 115365616 -34151421 + PB1 SINE Alu 47 112 -15 7 1465 242 295 25 37 chr6 115365982 115366063 -34150974 - MIRc SINE MIR -180 88 9 7 1465 32 26 0 0 chr6 115366894 115366933 -34150104 + AT_rich Low_complexity Low_complexity 1 39 0 7 1465 5907 63 12 5 chr6 115367066 115367841 -34149196 - L1_Mus2 LINE L1 0 6566 5787 7 1465 554 248 0 0 chr6 115367926 115368035 -34149002 + ID_B1 SINE B4 83 191 -33 7 1465 335 310 8 74 chr6 115367927 115368049 -34148988 + PB1D10 SINE Alu 3 116 -1 7 1465 206 150 50 0 chr6 115369119 115369159 -34147878 - MIR SINE MIR -5 257 216 7 1465 184 340 117 0 chr6 115369197 115369291 -34147746 + L2a LINE L2 3311 3415 -11 7 1465 1220 41 0 0 chr6 115369291 115369436 -34147601 + B1_Mus1 SINE Alu 2 146 -2 7 1465 639 0 0 0 chr6 115369436 115369507 -34147530 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 7 1465 327 197 28 0 chr6 115370300 115370371 -34146666 - tRNA-Ala-GCA tRNA tRNA -1 74 2 7 1465 21 0 0 0 chr6 115371400 115371421 -34145616 + AT_rich Low_complexity Low_complexity 1 21 0 7 1465 477 34 0 0 chr6 115373227 115373286 -34143751 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1465 355 286 20 0 chr6 115373774 115373872 -34143165 + PB1 SINE Alu 2 101 -26 7 1465 43 35 0 0 chr6 115373885 115373942 -34143095 + AT_rich Low_complexity Low_complexity 1 57 0 7 1465 302 119 0 0 chr6 115375210 115375252 -34141785 - tRNA-Gly-GGA tRNA tRNA -33 42 1 7 1465 180 0 0 0 chr6 115375338 115375358 -34141679 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1465 241 307 0 0 chr6 115375389 115375464 -34141573 - ID2 SINE ID -6 77 3 7 1465 234 290 43 0 chr6 115375779 115375848 -34141189 + ID SINE ID 2 73 -151 7 1465 285 189 230 0 chr6 115376126 115376200 -34140837 - PB1D10 SINE Alu -6 111 21 7 1465 221 371 78 58 chr6 115377546 115377751 -34139286 + L2a LINE L2 2948 3151 -275 7 1465 1243 79 16 33 chr6 115377751 115377935 -34139102 - B2_Mm2 SINE B2 -14 181 1 7 1465 221 371 78 58 chr6 115377935 115378193 -34138844 + L2a LINE L2 3152 3420 -6 7 1465 22 35 0 0 chr6 115378530 115378559 -34138478 + AT_rich Low_complexity Low_complexity 1 29 0 7 1465 1294 259 104 5 chr6 115378564 115379007 -34138030 - L1MC1 LINE L1 -368 5965 5479 7 1465 382 251 123 126 chr6 115379046 115379162 -34137875 - L1MC1 LINE L1 -805 5341 5205 7 1465 287 25 25 0 chr6 115379162 115379202 -34137835 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7 1465 888 118 7 49 chr6 115379202 115379345 -34137692 - B1_Mur3 SINE Alu -11 138 2 7 1465 382 251 123 126 chr6 115379345 115379496 -34137541 - L1MC1 LINE L1 -942 5204 5075 7 1465 647 189 110 0 chr6 115379579 115379706 -34137331 - B1_Mus2 SINE Alu -1 146 6 7 1465 544 213 103 0 chr6 115379717 115379882 -34137155 - L1MC1 LINE L1 -2368 3778 3586 7 1465 761 252 36 48 chr6 115379984 115380234 -34136803 - L1MC1 LINE L1 -2560 3586 3340 7 1465 301 277 15 0 chr6 115380245 115380310 -34136727 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 7 1465 197 339 39 47 chr6 115380976 115381103 -34135934 + MIRb SINE MIR 43 168 -100 7 1465 1138 89 0 0 chr6 115381345 115381491 -34135546 + B1_Mus1 SINE Alu 1 146 -2 7 1465 891 178 0 0 chr6 115381495 115381664 -34135373 + GA-rich Low_complexity Low_complexity 2 170 0 7 1465 648 235 161 69 chr6 115381674 115381935 -34135102 + B4 SINE B4 8 292 0 7 1465 268 298 39 32 chr6 115382434 115382590 -34134447 - HAL1 LINE L1 -219 2288 2132 7 1465 295 225 233 0 chr6 115383095 115383215 -34133822 - MIR SINE MIR -4 258 111 7 1465 809 303 100 15 chr6 115383441 115383775 -34133262 - ORR1E LTR MaLR 0 379 1 7 1465 473 259 9 0 chr6 115384763 115384875 -34132162 + PB1D9 SINE Alu 8 120 0 7 1465 403 63 16 16 chr6 115384880 115384944 -34132093 + (GAAAA)n Simple_repeat Simple_repeat 2 65 0 7 1465 362 246 0 0 chr6 115385110 115385179 -34131858 - ID4_ SINE ID -14 69 1 7 1465 263 290 34 36 chr6 115385229 115385326 -34131711 - ID4 SINE ID -56 96 1 7 1465 1176 41 7 0 chr6 115385357 115385503 -34131534 - B1_Mus1 SINE Alu 0 148 2 7 1465 284 270 37 25 chr6 115386279 115386361 -34130676 + ID4 SINE ID 12 94 -58 7 1465 298 288 15 0 chr6 115386992 115387058 -34129979 + ID4_ SINE ID 17 83 0 7 1465 235 294 68 10 chr6 115387786 115387889 -34129148 + MIRb SINE MIR 47 155 -113 7 1465 198 413 13 0 chr6 115388026 115388101 -34128936 - L2b LINE L2 -13 3362 3287 7 1465 1084 189 6 0 chr6 115388367 115388547 -34128490 + B3 SINE B2 34 214 -2 7 1465 247 298 0 0 chr6 115388553 115388610 -34128427 + B1_Mus2 SINE Alu 3 59 -90 7 1465 243 125 0 0 chr6 115388707 115388747 -34128290 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1465 1260 260 73 47 chr6 115388752 115389260 -34127777 + L1MA9 LINE L1 5273 5793 -507 7 1465 206 361 9 9 chr6 115389273 115389382 -34127655 + (CA)n Simple_repeat Simple_repeat 1 109 0 7 1465 441 345 0 0 chr6 115389382 115389521 -34127516 + L1MA9 LINE L1 5783 5921 -370 7 1465 485 214 19 0 chr6 115389571 115389674 -34127363 + L1MA9 LINE L1 6057 6161 -151 7 1465 432 0 0 0 chr6 115390306 115390354 -34126683 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1465 21 0 0 0 chr6 115391680 115391701 -34125336 + AT_rich Low_complexity Low_complexity 1 21 0 7 1465 257 0 30 0 chr6 115391937 115391970 -34125067 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1465 297 330 47 37 chr6 115391972 115392079 -34124958 - MIRc SINE MIR -159 109 2 7 1465 357 277 56 66 chr6 115392534 115392552 -34124485 + B4A SINE B4 73 147 -145 7 1465 498 189 177 16 chr6 115392552 115392676 -34124361 + B1_Mur1 SINE Alu 6 149 0 8 1465 357 277 56 66 chr6 115392676 115392697 -34124340 + B4A SINE B4 148 247 -45 7 1465 189 0 0 0 chr6 115392833 115392854 -34124183 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1465 289 237 0 0 chr6 115393175 115393234 -34123803 + B1F2 SINE Alu 1 59 -90 8 1465 227 258 57 76 chr6 115394163 115394268 -34122769 - MLT1A LTR MaLR 0 408 306 8 1465 777 98 0 0 chr6 115394347 115394459 -34122578 + (GA)n Simple_repeat Simple_repeat 1 112 0 8 1465 373 243 53 26 chr6 115394465 115394579 -34122458 - MLT1A LTR MaLR -202 172 56 8 1465 905 216 113 0 chr6 115394966 115395160 -34121877 + B3 SINE B2 1 216 0 8 1465 430 306 7 34 chr6 115395179 115395328 -34121709 + RSINE1 SINE B4 3 147 -18 8 1465 28 29 0 0 chr6 115395350 115395385 -34121652 + AT_rich Low_complexity Low_complexity 1 35 0 8 1465 586 198 85 0 chr6 115395777 115395883 -34121154 + PB1D9 SINE Alu 2 116 -4 8 1465 23 0 0 0 chr6 115396463 115396486 -34120551 + AT_rich Low_complexity Low_complexity 1 23 0 8 1465 379 286 148 13 chr6 115396791 115397021 -34120016 + L1MEg LINE L1 1087 1347 -4737 8 1465 698 237 0 0 chr6 115397554 115397672 -34119365 + PB1D7 SINE Alu 1 118 -2 8 1465 205 248 96 67 chr6 115397818 115397922 -34119115 - L2a LINE L2 -44 3382 3276 8 1465 973 92 61 0 chr6 115397990 115398121 -34118916 + B1_Mus1 SINE Alu 1 139 -9 8 1465 840 26 43 0 chr6 115398121 115398238 -34118799 + (GAGAA)n Simple_repeat Simple_repeat 4 125 0 8 1465 253 331 85 72 chr6 115398512 115398665 -34118372 + B4 SINE B4 39 193 -99 8 1465 501 264 0 9 chr6 115398570 115398681 -34118356 + PB1D10 SINE Alu 8 117 0 8 1465 323 333 25 102 chr6 115398701 115398858 -34118179 + ID_B1 SINE B4 32 176 -48 8 1465 419 283 10 10 chr6 115398774 115398874 -34118163 + PB1D10 SINE Alu 12 111 -6 8 1465 213 236 36 18 chr6 115398886 115398942 -34118095 + ID4_ SINE ID 8 64 -19 8 1465 211 256 48 12 chr6 115399173 115399250 -34117787 - L2a LINE L2 -834 2585 2506 8 1465 360 0 0 0 chr6 115399250 115399290 -34117747 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1465 33 25 0 0 chr6 115399517 115399557 -34117480 + AT_rich Low_complexity Low_complexity 1 40 0 8 1465 470 390 45 7 chr6 115399582 115399737 -34117300 - RSINE1 SINE B4 -2 163 3 8 1465 869 281 81 18 chr6 115400580 115400852 -34116185 - B4 SINE B4 -2 290 2 8 1465 519 17 0 0 chr6 115401413 115401473 -34115564 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1465 246 324 14 14 chr6 115401841 115401913 -34115124 + ID4 SINE ID 12 83 0 8 1465 231 114 0 0 chr6 115402199 115402234 -34114803 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 8 1465 365 243 29 0 chr6 115402257 115402327 -34114710 - ID4_ SINE ID -11 72 1 8 1465 692 164 17 17 chr6 115403261 115403379 -34113658 + B1_Mur1 SINE Alu 31 148 -1 8 1465 294 29 0 0 chr6 115403481 115403516 -34113521 + (GTTTG)n Simple_repeat Simple_repeat 5 39 0 8 1465 1023 74 15 0 chr6 115403517 115403652 -34113385 - B1_Mus1 SINE Alu -6 142 6 8 1465 421 196 19 102 chr6 115403556 115403664 -34113373 - MT2B LTR ERVL -344 257 159 8 1465 412 222 129 20 chr6 115404046 115404147 -34112890 - PB1D10 SINE Alu -3 114 3 8 1465 647 195 8 41 chr6 115404635 115404758 -34112279 + PB1D7 SINE Alu 1 119 -1 8 1465 260 109 304 0 chr6 115407226 115407272 -34109765 - tRNA-Ala-GCY_ tRNA tRNA -8 67 8 8 1465 188 320 39 0 chr6 115407479 115407557 -34109480 - MIR3 SINE MIR -17 191 111 8 1465 344 262 0 24 chr6 115407898 115407980 -34109057 + ID4 SINE ID 2 81 -2 8 1465 579 289 14 27 chr6 115408278 115408424 -34108613 + ID_B1 SINE B4 80 223 -1 8 1465 533 213 19 2 chr6 115408842 115408950 -34108087 + PB1D9 SINE Alu 8 120 -29 8 1465 238 197 15 62 chr6 115409020 115409085 -34107952 + ID_B1 SINE B4 155 216 -8 8 1465 379 102 0 0 chr6 115409033 115409092 -34107945 + B1_Mur4 SINE Alu 91 149 -1 8 1465 973 190 72 34 chr6 115409114 115409321 -34107716 + B3 SINE B2 2 216 0 8 1465 632 231 22 22 chr6 115409345 115409482 -34107555 + RSINE1 SINE B4 3 139 -26 8 1465 21 0 0 0 chr6 115409679 115409700 -34107337 + AT_rich Low_complexity Low_complexity 1 21 0 8 1465 310 239 0 40 chr6 115409700 115409774 -34107263 - ID4 SINE ID -11 72 2 8 1465 396 0 0 0 chr6 115410106 115410150 -34106887 + (TA)n Simple_repeat Simple_repeat 2 45 0 8 1465 240 176 84 42 chr6 115410297 115410368 -34106669 - BLACKJACK DNA AcHobo -1882 1062 989 8 1465 224 203 0 33 chr6 115410497 115410558 -34106479 + CT-rich Low_complexity Low_complexity 5 63 0 8 1465 267 366 10 0 chr6 115410560 115410661 -34106376 - RMER15 LTR ERVL -103 472 371 8 1465 312 297 0 21 chr6 115410661 115410754 -34106283 - Lx8 LINE L1 -240 7233 7143 8 1465 224 349 72 72 chr6 115410766 115411016 -34106021 - L2c LINE L2 -9 3378 3126 8 1465 308 181 125 96 chr6 115411336 115411440 -34105597 + PB1D10 SINE Alu 2 108 -9 8 1465 395 209 0 0 chr6 115411470 115411537 -34105500 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 8 1465 1072 200 47 5 chr6 115411637 115411828 -34105209 + B3 SINE B2 1 199 -17 8 1465 210 37 0 0 chr6 115411856 115411883 -34105154 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1465 233 330 72 18 chr6 115412588 115412699 -34104338 - L2c LINE L2 -28 3359 3243 8 1465 212 0 36 0 chr6 115413398 115413426 -34103611 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1465 867 37 0 0 chr6 115415183 115415290 -34101747 + (GA)n Simple_repeat Simple_repeat 1 107 0 8 1465 348 295 13 0 chr6 115417532 115417610 -34099427 + ID4 SINE ID 2 80 -3 8 1465 24 0 0 0 chr6 115417660 115417684 -34099353 + AT_rich Low_complexity Low_complexity 1 24 0 8 1465 551 324 0 0 chr6 115418457 115418593 -34098444 - ID_B1 SINE B4 -8 216 81 8 1465 570 29 0 0 chr6 115418913 115418981 -34098056 + (GGAA)n Simple_repeat Simple_repeat 4 71 0 8 1465 687 206 120 42 chr6 115420372 115420539 -34096498 + ID_B1 SINE B4 37 216 -8 8 1465 426 94 0 0 chr6 115421140 115421204 -34095833 + (GA)n Simple_repeat Simple_repeat 2 65 0 8 1465 316 243 35 112 chr6 115421267 115421383 -34095654 + MT2B LTR ERVL 158 264 -337 8 1465 886 152 0 21 chr6 115421280 115421421 -34095616 + B1_Mus2 SINE Alu 10 147 0 8 1465 238 24 0 89 chr6 115421423 115421468 -34095569 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 8 1465 520 259 78 14 chr6 115421523 115421664 -34095373 + B3 SINE B2 67 216 0 8 1465 394 262 0 12 chr6 115422013 115422094 -34094943 + ID2 SINE ID 2 81 -2 8 1465 1249 88 0 0 chr6 115422514 115422662 -34094375 + B1_Mus1 SINE Alu 1 148 0 8 1465 226 351 108 62 chr6 115423794 115423970 -34093067 - MamSINE1 SINE tRNA -86 204 21 8 1465 241 253 12 85 chr6 115424065 115424079 -34092958 + MT2B2 LTR ERVL 151 158 -426 8 1465 307 305 103 19 chr6 115424079 115424186 -34092851 + B1F1 SINE Alu 1 116 -1 8 1465 411 286 126 46 chr6 115424423 115424601 -34092436 - MIR SINE MIR -2 260 60 8 1465 382 215 176 32 chr6 115424601 115424726 -34092311 + B1_Mur2 SINE Alu 1 143 -6 8 1465 411 286 126 46 chr6 115424726 115424785 -34092252 - MIR SINE MIR -203 59 4 8 1465 294 151 0 0 chr6 115424960 115425033 -34092004 + T-rich Low_complexity Low_complexity 1 73 0 8 1465 288 212 212 0 chr6 115425063 115425129 -34091908 - ID4_ SINE ID -3 80 1 8 1465 488 240 21 85 chr6 115425294 115425435 -34091602 - ID_B1 SINE B4 -6 218 87 8 1465 213 250 0 0 chr6 115425794 115425854 -34091183 + (CATA)n Simple_repeat Simple_repeat 4 63 0 8 1465 428 256 14 19 chr6 115428214 115428347 -34088690 - MIRb SINE MIR -92 184 55 8 1465 299 316 25 50 chr6 115428362 115428442 -34088595 + ID4_ SINE ID 1 78 -5 8 1465 294 143 0 0 chr6 115428442 115428491 -34088546 + (CACCAT)n Simple_repeat Simple_repeat 6 54 0 8 1465 1367 219 30 4 chr6 115428936 115429207 -34087830 + B4A SINE B4 3 280 -12 8 1465 296 267 43 32 chr6 115429766 115429783 -34087254 - ID_B1 SINE B4 -127 97 4 8 1465 322 303 13 0 chr6 115429783 115429859 -34087178 - ID4_ SINE ID -3 80 4 8 1465 241 299 202 56 chr6 115430778 115430991 -34086046 + MIRb SINE MIR 17 260 -8 8 1465 1037 8 8 0 chr6 115431364 115431486 -34085551 + (GGAGA)n Simple_repeat Simple_repeat 2 124 0 8 1465 226 155 32 65 chr6 115432433 115432495 -34084542 + GA-rich Low_complexity Low_complexity 5 64 0 8 1465 441 0 0 0 chr6 115432732 115432781 -34084256 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1465 700 210 96 107 chr6 115432785 115432982 -34084055 + B3A SINE B2 1 195 -3 8 1465 355 288 14 0 chr6 115432986 115433059 -34083978 + B4 SINE B4 83 156 -136 8 1465 972 114 0 0 chr6 115433075 115433242 -34083795 + (GGAA)n Simple_repeat Simple_repeat 2 168 0 8 1465 235 204 163 0 chr6 115433322 115433371 -34083666 - ID4_ SINE ID -2 81 25 8 1465 559 252 23 31 chr6 115433357 115433506 -34083531 - PB1 SINE Alu -13 136 6 8 1465 233 250 17 0 chr6 115433509 115433569 -34083468 - MIR SINE MIR -116 146 86 8 1465 195 353 78 0 chr6 115435552 115435668 -34081369 - MIRm SINE MIR -132 144 20 8 1465 199 132 37 19 chr6 115436280 115436334 -34080703 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 8 1465 540 0 0 0 chr6 115437685 115437745 -34079292 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 1465 303 348 107 18 chr6 115437751 115437976 -34079061 + L1M5 LINE L1 2869 3113 -3033 8 1465 829 237 108 0 chr6 115438078 115438272 -34078765 + B3 SINE B2 2 216 0 8 1465 348 256 200 25 chr6 115439203 115439323 -34077714 + PB1 SINE Alu 9 149 0 9 1465 229 68 45 0 chr6 115439561 115439605 -34077432 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 9 1465 675 261 95 70 chr6 115440571 115440814 -34076223 - B4 SINE B4 -8 284 36 9 1465 406 276 127 17 chr6 115440932 115441105 -34075932 - MER2 DNA MER2_type -59 286 95 9 1465 290 279 0 19 chr6 115441271 115441377 -34075660 + BC1_Mm scRNA scRNA 23 126 -26 9 1465 276 224 0 65 chr6 115441396 115441458 -34075579 + ID_B1 SINE B4 104 161 -63 9 1465 273 57 0 0 chr6 115441460 115441495 -34075542 + (T)n Simple_repeat Simple_repeat 1 35 0 9 1465 1125 122 0 0 chr6 115441495 115441642 -34075395 - B1_Mus1 SINE Alu 0 148 2 9 1465 238 243 27 54 chr6 115441642 115441716 -34075321 + ID_B1 SINE B4 150 221 -3 9 1465 630 184 273 20 chr6 115441726 115441876 -34075161 + B3A SINE B2 3 190 -8 9 1465 357 359 56 48 chr6 115441915 115442164 -34074873 + B4 SINE B4 36 286 -6 9 1465 549 99 0 0 chr6 115444500 115444581 -34072456 + (GA)n Simple_repeat Simple_repeat 2 82 0 9 1465 1362 28 78 6 chr6 115444611 115444772 -34072265 + B2_Mm1a SINE B2 1 160 -33 9 1465 354 23 0 0 chr6 115444772 115444815 -34072222 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 9 1465 1362 28 78 6 chr6 115444815 115444833 -34072204 + B2_Mm1a SINE B2 161 191 -2 9 1465 390 286 28 37 chr6 115444843 115444952 -34072085 + PB1 SINE Alu 13 120 -7 9 1465 530 285 142 53 chr6 115444973 115445199 -34071838 + B4A SINE B4 3 248 -44 9 1465 192 163 22 44 chr6 115445274 115445319 -34071718 - L2c LINE L2 -61 3326 3283 9 1465 240 329 25 0 chr6 115446004 115446083 -34070954 + ID4 SINE ID 2 82 -1 9 1465 570 294 15 44 chr6 115446362 115446568 -34070469 + MIRb SINE MIR 35 234 -34 9 1465 888 201 69 0 chr6 115446709 115446883 -34070154 + B3A SINE B2 2 187 -11 9 1465 851 136 13 70 chr6 115447066 115447224 -34069813 - B1_Mur4 SINE Alu -1 149 1 9 1465 8132 32 1 2 chr6 115447276 115448572 -34068465 + L1Md_F3 LINE L1 5269 6563 -21 9 1465 199 295 43 6 chr6 115449389 115449490 -34067547 + MIR SINE MIR 38 141 -127 9 1465 658 336 102 0 chr6 115450519 115450784 -34066253 - MER2 DNA MER2_type -52 293 2 9 1465 182 260 100 14 chr6 115451657 115451773 -34065264 - L2a LINE L2 -274 3152 3018 9 1465 432 0 0 0 chr6 115454075 115454123 -34062914 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1465 209 159 0 22 chr6 115454155 115454200 -34062837 + CT-rich Low_complexity Low_complexity 4 47 0 9 1465 239 318 45 18 chr6 115454511 115454623 -34062414 + LTR16C LTR ERVL 86 200 -289 9 1465 194 282 25 37 chr6 115454766 115454847 -34062190 - L2b LINE L2 -16 3359 3280 9 1465 230 259 88 72 chr6 115456353 115456753 -34060284 - L1M3e LINE L1 -5369 1661 1256 9 1465 366 284 85 55 chr6 115456844 115457079 -34059958 - LTR33 LTR ERVL -225 290 49 9 1465 1153 220 33 0 chr6 115457294 115457535 -34059502 + Lx7 LINE L1 5005 5253 -627 9 1465 5716 232 83 30 chr6 115457549 115459372 -34057665 + Lx7 LINE L1 5450 7366 -330 9 1465 25 83 0 0 chr6 115459479 115459539 -34057498 + AT_rich Low_complexity Low_complexity 1 60 0 9 1465 520 246 0 0 chr6 115459584 115459698 -34057339 - RSINE1 SINE B4 -44 121 8 9 1465 227 273 149 71 chr6 115459732 115459886 -34057151 - LTR16D LTR ERVL -2 649 484 9 1465 241 271 43 0 chr6 115459985 115460055 -34056982 - MLT1F LTR MaLR -165 404 332 9 1465 991 250 98 38 chr6 115460056 115460422 -34056615 + MLT1B LTR MaLR 3 390 0 9 1465 360 317 159 35 chr6 115460422 115460515 -34056522 - MLT1F LTR MaLR -247 301 173 9 1465 300 284 12 0 chr6 115460515 115460596 -34056441 + ID4 SINE ID 2 83 0 9 1465 360 317 159 35 chr6 115460596 115460729 -34056308 - MLT1F LTR MaLR -376 172 43 9 1465 217 267 110 11 chr6 115461181 115461272 -34055765 - MIR3 SINE MIR -23 185 86 9 1465 207 331 62 23 chr6 115461891 115462021 -34055016 - MIRb SINE MIR -62 206 72 9 1465 180 325 83 50 chr6 115462148 115462268 -34054769 + MIRm SINE MIR 15 138 -138 9 1465 329 136 0 15 chr6 115462425 115462492 -34054545 + (TA)n Simple_repeat Simple_repeat 2 67 0 9 1465 685 262 197 8 chr6 115462616 115462855 -34054182 - B4 SINE B4 -7 285 2 9 1465 315 289 60 26 chr6 115462962 115463138 -34053899 - MTEb LTR MaLR -19 360 158 9 1465 1233 233 130 0 chr6 115463178 115463500 -34053537 - MTE2b LTR MaLR -13 366 3 9 1465 5823 208 77 6 chr6 115463569 115464837 -34052200 + Lx7 LINE L1 6005 7363 -333 9 1465 583 120 64 9 chr6 115464847 115464956 -34052081 - B1_Mur4 SINE Alu 0 150 36 9 1465 226 278 174 22 chr6 115464892 115464984 -34052053 - MT2B LTR ERVL -344 257 152 9 1465 243 130 0 0 chr6 115464990 115465036 -34052001 + Lx7 LINE L1 7371 7416 -280 9 1465 189 0 0 0 chr6 115465059 115465080 -34051957 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1465 268 238 63 8 chr6 115465080 115465197 -34051840 + Lx7 LINE L1 7572 7696 0 9 1465 369 0 0 0 chr6 115465209 115465250 -34051787 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1465 250 343 0 10 chr6 115465586 115465689 -34051348 + MIR SINE MIR 69 170 -92 9 1465 213 39 0 0 chr6 115466652 115466678 -34050359 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 9 1465 4762 42 8 3 chr6 115466707 115467306 -34049731 - L1_Mus1 LINE L1 0 6567 5966 9 1465 226 64 98 78 chr6 115467306 115467352 -34049685 - PB1D7 SINE Alu 0 120 73 9 1465 743 201 14 0 chr6 115467308 115467447 -34049590 - ID_B1 SINE B4 -3 221 81 9 1465 363 236 0 0 chr6 115467474 115467546 -34049491 + B1F2 SINE Alu 1 72 -77 9 1465 435 306 21 37 chr6 115467585 115467775 -34049262 + RMER15 LTR ERVL 317 503 -72 9 1465 283 301 16 74 chr6 115467819 115467941 -34049096 + MLT1A1 LTR MaLR 80 194 -214 9 1465 653 168 8 8 chr6 115470186 115470312 -34046725 - B1_Mur3 SINE Alu -23 126 1 9 1465 334 270 0 106 chr6 115470312 115470347 -34046690 - MT2B LTR ERVL -447 154 135 9 1465 442 281 71 7 chr6 115470354 115470508 -34046529 + L1MB7 LINE L1 6010 6173 -11 9 1465 270 0 0 0 chr6 115470775 115470805 -34046232 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1465 408 20 0 0 chr6 115470805 115470853 -34046184 + (GA)n Simple_repeat Simple_repeat 1 49 0 9 1465 587 252 0 30 chr6 115470865 115471000 -34046037 - B3A SINE B2 -54 144 14 9 1465 1092 91 0 0 chr6 115471121 115471275 -34045762 + (TGAA)n Simple_repeat Simple_repeat 1 154 0 9 1465 250 224 155 0 chr6 115471553 115471611 -34045426 - tRNA-Ala-GCG tRNA tRNA -8 67 1 9 1465 894 136 21 0 chr6 115472297 115472437 -34044600 + B1_Mur4 SINE Alu 3 145 -5 9 1465 309 266 106 17 chr6 115472511 115472616 -34044421 - MIRb SINE MIR -150 118 12 9 1466 437 224 0 67 chr6 115475019 115475124 -34041913 - B1_Mur1 SINE Alu -26 123 26 9 1466 493 219 113 8 chr6 115475118 115475242 -34041795 - B4 SINE B4 -84 208 72 9 1466 242 0 61 0 chr6 115475245 115475278 -34041759 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 9 1466 1046 67 0 0 chr6 115475294 115475429 -34041608 - B1_Mus1 SINE Alu -11 137 3 9 1466 293 266 63 0 chr6 115475439 115475518 -34041519 - B4 SINE B4 -204 88 5 9 1466 288 0 0 0 chr6 115476119 115476151 -34040886 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 9 1466 599 271 60 0 chr6 115476151 115476302 -34040735 - ID_B1 SINE B4 -13 211 52 9 1466 525 192 0 0 chr6 115476725 115476845 -34040192 + (TTGG)n Simple_repeat Simple_repeat 2 121 0 9 1466 368 250 6 0 chr6 115476906 115477066 -34039971 + (TTGG)n Simple_repeat Simple_repeat 3 163 0 9 1466 419 0 20 0 chr6 115477517 115477568 -34039469 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1466 416 363 68 19 chr6 115478203 115478408 -34038629 + MER2 DNA MER2_type 56 270 -75 9 1466 182 364 20 10 chr6 115478412 115478512 -34038525 - MIRb SINE MIR -77 191 91 9 1466 244 302 24 65 chr6 115478603 115478727 -34038310 - LTR88b LTR Gypsy? -4 833 715 9 1466 630 228 72 20 chr6 115479500 115479652 -34037385 + ID_B1 SINE B4 1 160 -64 9 1466 248 284 36 81 chr6 115479580 115479691 -34037346 + PB1D7 SINE Alu 10 115 -5 9 1466 987 197 21 5 chr6 115479771 115479965 -34037072 + B3 SINE B2 5 201 -15 9 1466 195 232 35 35 chr6 115480428 115480457 -34036580 + MIRm SINE MIR 207 264 -12 9 1466 245 0 0 0 chr6 115480457 115480486 -34036551 + L2b LINE L2 3333 3361 -14 9 1466 264 186 0 0 chr6 115480536 115480595 -34036442 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1466 234 182 0 22 chr6 115480622 115480667 -34036370 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1466 234 0 0 0 chr6 115480707 115480733 -34036304 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1466 424 272 121 80 chr6 115480957 115481181 -34035856 - B4 SINE B4 -18 274 42 9 1466 262 203 17 17 chr6 115481289 115481349 -34035688 + tRNA-Ala-GCY_ tRNA tRNA 8 67 -8 9 1466 390 260 0 88 chr6 115481475 115481589 -34035448 + MT2B LTR ERVL 155 258 -343 9 1466 776 209 29 0 chr6 115481490 115481629 -34035408 + B1_Mus1 SINE Alu 6 148 0 9 1466 189 0 0 0 chr6 115481644 115481665 -34035372 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 9 1466 707 192 19 13 chr6 115481675 115481833 -34035204 + B3A SINE B2 2 160 -38 9 1466 216 0 0 0 chr6 115481845 115481869 -34035168 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 1466 341 81 26 39 chr6 115481875 115481952 -34035085 + (TTTA)n Simple_repeat Simple_repeat 1 76 0 9 1466 739 114 118 29 chr6 115481960 115482096 -34034941 + B1_Mur4 SINE Alu 1 148 -2 9 1466 488 234 86 0 chr6 115482235 115482363 -34034674 - MamRep605 Unknown Unknown -262 614 476 9 1466 394 256 0 0 chr6 115482656 115482742 -34034295 + PB1 SINE Alu 22 107 -20 9 1466 627 136 0 0 chr6 115482742 115482852 -34034185 + (GGGA)n Simple_repeat Simple_repeat 3 112 0 9 1466 414 0 0 0 chr6 115482921 115482967 -34034070 + (TTG)n Simple_repeat Simple_repeat 2 47 0 9 1466 301 196 0 0 chr6 115482969 115483020 -34034017 - PB1D7 SINE Alu -12 108 58 9 1466 1066 187 0 6 chr6 115483037 115483220 -34033817 - B3 SINE B2 -34 182 1 9 1466 378 0 0 0 chr6 115483750 115483792 -34033245 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1466 192 267 191 34 chr6 115483888 115483977 -34033060 + MIR SINE MIR 44 146 -62 1 1466 649 244 19 13 chr6 115484099 115484257 -34032780 + RSINE1 SINE B4 3 161 -4 1 1466 195 186 23 23 chr6 115484483 115484527 -34032510 + MIR SINE MIR 60 103 -159 1 1466 1138 55 0 7 chr6 115485469 115485617 -34031420 + B1_Mus2 SINE Alu 1 147 0 1 1466 510 125 0 0 chr6 115485626 115485706 -34031331 + (GA)n Simple_repeat Simple_repeat 2 81 0 1 1466 237 132 0 1 chr6 115485826 115485865 -34031172 + MIRc SINE MIR 111 152 -116 1 1466 744 260 48 29 chr6 115485865 115486071 -34030966 + B3 SINE B2 1 210 -6 1 1466 221 163 0 58 chr6 115486071 115486083 -34030954 + MIR SINE MIR 150 159 -103 1 1466 288 0 0 0 chr6 115486096 115486128 -34030909 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1 1466 434 230 69 69 chr6 115486184 115486343 -34030694 - MTE2b LTR MaLR -15 364 206 1 1466 338 264 73 24 chr6 115486356 115486480 -34030557 - MTE2b LTR MaLR -223 136 7 1 1466 223 255 0 0 chr6 115487885 115487936 -34029101 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1466 485 271 28 0 chr6 115487971 115488115 -34028922 + B3A SINE B2 3 150 -48 1 1466 225 94 0 0 chr6 115488123 115488155 -34028882 + (CATA)n Simple_repeat Simple_repeat 1 32 0 1 1466 531 199 92 46 chr6 115488181 115488355 -34028682 + B3A SINE B2 2 183 -15 1 1466 265 286 102 72 chr6 115488471 115488637 -34028400 + MIR3 SINE MIR 17 187 -21 1 1466 222 62 0 0 chr6 115489487 115489519 -34027518 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1466 361 252 135 0 chr6 115489785 115489896 -34027141 + ID_B1 SINE B4 99 224 0 1 1466 2467 114 26 24 chr6 115489941 115490363 -34026674 - RMER10A LTR ERVL -19 423 1 1 1466 30 0 0 0 chr6 115490437 115490467 -34026570 + AT_rich Low_complexity Low_complexity 1 30 0 1 1466 386 157 30 101 chr6 115490507 115490606 -34026431 + MT2B LTR ERVL 166 257 -344 1 1466 769 125 8 15 chr6 115490521 115490651 -34026386 + B1_Mus2 SINE Alu 19 147 0 1 1466 691 133 42 0 chr6 115490770 115490890 -34026147 + B1_Mur3 SINE Alu 19 143 -6 1 1466 216 97 0 0 chr6 115490908 115490939 -34026098 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 1 1466 426 74 0 12 chr6 115491336 115491450 -34025587 - B2_Mm2 SINE B2 0 195 47 1 1466 1322 79 6 0 chr6 115491478 115491656 -34025381 - B2_Mm1t SINE B2 -14 179 1 1 1466 189 0 0 0 chr6 115491695 115491716 -34025321 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1466 1253 256 89 25 chr6 115491791 115492231 -34024806 - MER82 DNA MER2_type -184 469 2 1 1466 662 246 13 80 chr6 115492359 115492389 -34024648 - B3 SINE B2 -6 210 180 1 1466 1121 116 6 6 chr6 115492389 115492563 -34024474 + B2_Mm2 SINE B2 3 176 -19 1 1466 662 246 13 80 chr6 115492563 115492757 -34024280 - B3 SINE B2 -37 179 1 1 1466 227 184 0 0 chr6 115492769 115492818 -34024219 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 1 1466 880 41 82 0 chr6 115492831 115492953 -34024084 - B1_Mus2 SINE Alu 0 147 16 1 1466 455 212 77 42 chr6 115492953 115492974 -34024063 - ID_B1 SINE B4 0 224 77 1 1466 304 330 42 42 chr6 115492975 115493095 -34023942 - PB1 SINE Alu 0 127 8 1 1466 189 0 0 0 chr6 115493198 115493219 -34023818 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1466 228 217 33 0 chr6 115493220 115493280 -34023757 - ID4 SINE ID -19 64 3 1 1466 251 157 0 19 chr6 115493288 115493340 -34023697 + GA-rich Low_complexity Low_complexity 1 51 0 1 1466 642 236 24 0 chr6 115493345 115493472 -34023565 - B1_Mur1 SINE Alu -18 131 2 1 1466 1998 227 72 19 chr6 115493714 115494243 -34022794 - Lx8 LINE L1 -342 7131 6575 1 1466 515 202 0 35 chr6 115494367 115494480 -34022557 + B1F2 SINE Alu 33 141 -8 1 1466 216 0 0 0 chr6 115494483 115494507 -34022530 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1466 533 265 166 11 chr6 115495014 115495201 -34021836 + ID_B1 SINE B4 1 216 -8 1 1466 378 0 0 0 chr6 115495202 115495244 -34021793 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 1466 339 324 9 0 chr6 115495401 115495509 -34021528 + PB1D10 SINE Alu 5 113 -4 1 1466 369 0 0 0 chr6 115495653 115495694 -34021343 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1466 1227 40 0 0 chr6 115495746 115495894 -34021143 + B1_Mus1 SINE Alu 1 148 0 1 1466 300 287 0 12 chr6 115495924 115496018 -34021019 + ID4_ SINE ID 2 94 -58 1 1466 539 278 83 26 chr6 115496071 115496263 -34020774 - B3 SINE B2 -13 203 1 1 1466 705 239 18 24 chr6 115496431 115496598 -34020439 - B3 SINE B2 -24 192 27 1 1466 1062 73 0 0 chr6 115497479 115497615 -34019422 - B1_Mus2 SINE Alu -11 136 1 1 1466 1005 178 65 20 chr6 115498464 115498665 -34018372 + B3 SINE B2 6 215 -1 1 1466 447 363 0 7 chr6 115499526 115499804 -34017233 + (CA)n Simple_repeat Simple_repeat 1 275 0 1 1466 274 186 42 28 chr6 115500157 115500229 -34016808 - PB1D10 SINE Alu 0 117 45 1 1466 299 315 0 27 chr6 115500501 115500576 -34016461 + RSINE1 SINE B4 2 74 -91 2 1466 1657 176 27 41 chr6 115500644 115501082 -34015955 - MT2A LTR ERVL -47 554 20 3 1466 376 143 36 0 chr6 115501084 115501140 -34015897 + RSINE1 SINE B4 73 130 -35 4 1466 246 128 0 0 chr6 115501140 115501179 -34015858 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1466 900 93 139 0 chr6 115501223 115501352 -34015685 + B1_Mus1 SINE Alu 1 147 -1 6 1466 1708 156 20 17 chr6 115501360 115501660 -34015377 - RMER12 LTR ERVK -1002 320 20 7 1466 1017 192 80 0 chr6 115501774 115501961 -34015076 + B3 SINE B2 1 202 -14 8 1466 333 277 36 0 chr6 115502141 115502224 -34014813 + PB1D10 SINE Alu 1 86 -31 9 1466 360 256 24 71 chr6 115502267 115502393 -34014644 + PB1D7 SINE Alu 1 120 0 1 1466 296 303 138 12 chr6 115502580 115502747 -34014290 + B3A SINE B2 5 192 -6 1 1466 267 31 0 0 chr6 115502763 115502795 -34014242 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1466 609 260 0 40 chr6 115502813 115502832 -34014205 + ID_B1 SINE B4 79 224 0 1 1466 916 129 0 8 chr6 115502832 115502965 -34014072 + B1_Mur1 SINE Alu 17 148 -1 1 1466 1770 128 60 30 chr6 115503236 115503534 -34013503 - ORR1C1 LTR MaLR -71 307 1 1 1466 254 302 65 40 chr6 115504571 115504695 -34012342 + MT2B LTR ERVL 137 263 -338 1 1466 387 218 77 60 chr6 115504587 115504704 -34012333 + ID_B1 SINE B4 78 196 -28 1 1466 595 183 92 0 chr6 115504603 115504723 -34012314 + B1F SINE Alu 9 139 -10 1 1466 2521 154 10 5 chr6 115504735 115505134 -34011903 - MTC LTR MaLR -20 401 1 1 1466 297 313 47 107 chr6 115505534 115505684 -34011353 - MLT1C LTR MaLR -95 410 257 2 1466 279 0 0 0 chr6 115506830 115506861 -34010176 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1466 525 240 101 53 chr6 115507128 115507317 -34009720 + B3A SINE B2 1 198 0 2 1466 1120 64 14 0 chr6 115507661 115507802 -34009235 - B1_Mur4 SINE Alu -7 143 1 2 1466 385 259 43 26 chr6 115507841 115507956 -34009081 + PB1D10 SINE Alu 1 117 0 2 1466 1105 234 45 58 chr6 115508563 115508665 -34008372 + MTD LTR MaLR 112 210 -209 2 1466 1155 55 0 20 chr6 115508665 115508814 -34008223 + B1_Mus2 SINE Alu 2 147 0 2 1466 707 48 0 19 chr6 115508815 115508920 -34008117 + (GAAA)n Simple_repeat Simple_repeat 3 105 0 2 1466 1105 234 45 58 chr6 115508920 115509106 -34007931 + MTD LTR MaLR 211 398 -21 2 1466 496 305 137 10 chr6 115510204 115510409 -34006628 + Tigger7 DNA MER2_type 2252 2482 -9 2 1466 22 0 0 0 chr6 115510588 115510610 -34006427 + AT_rich Low_complexity Low_complexity 1 22 0 2 1466 1140 109 14 120 chr6 115510864 115511073 -34005964 - B2_Mm2 SINE B2 -8 187 1 3 1466 28 0 0 0 chr6 115511081 115511109 -34005928 + AT_rich Low_complexity Low_complexity 1 28 0 3 1466 369 0 0 0 chr6 115511354 115511395 -34005642 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1466 428 200 10 0 chr6 115511728 115511828 -34005209 + CT-rich Low_complexity Low_complexity 1 101 0 3 1466 261 301 95 19 chr6 115511828 115511933 -34005104 - PB1D10 SINE Alu 0 117 5 3 1466 564 255 27 14 chr6 115511978 115511990 -34005047 - B1_Mur3 SINE Alu 0 149 139 3 1466 369 0 0 0 chr6 115511990 115512031 -34005006 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 1466 564 255 27 14 chr6 115512031 115512165 -34004872 - B1_Mur3 SINE Alu -11 138 1 3 1466 306 246 58 0 chr6 115512180 115512249 -34004788 - L1MB7 LINE L1 0 6184 6112 3 1466 305 291 25 0 chr6 115512249 115512328 -34004709 + ID4_ SINE ID 3 83 0 3 1466 233 347 53 0 chr6 115512363 115512438 -34004599 + AluG_3 SINE Alu 142 220 -91 3 1466 504 32 0 0 chr6 115512475 115512537 -34004500 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 4 1466 1205 76 13 0 chr6 115512761 115512919 -34004118 + B2_Mm2 SINE B2 1 160 -35 4 1466 387 0 0 0 chr6 115512923 115512966 -34004071 + (CATA)n Simple_repeat Simple_repeat 2 44 0 4 1466 1024 200 39 14 chr6 115513926 115514134 -34002903 + B3 SINE B2 1 213 -3 4 1466 1201 55 7 0 chr6 115514281 115514426 -34002611 + B1_Mm SINE Alu 1 146 -1 4 1466 189 0 0 0 chr6 115514435 115514456 -34002581 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1466 724 218 141 21 chr6 115516372 115516564 -34000473 - B3 SINE B2 0 216 2 4 1466 443 295 18 18 chr6 115516569 115516683 -34000354 - B1F SINE Alu 0 149 36 4 1466 1526 82 0 0 chr6 115516762 115516957 -34000080 + B2_Mm2 SINE B2 1 195 0 4 1466 310 330 26 9 chr6 115516971 115517084 -33999953 - MIRb SINE MIR -136 132 18 4 1466 286 242 0 0 chr6 115517359 115517421 -33999616 - tRNA-Ala-GCY_ tRNA tRNA -11 64 3 5 1466 405 200 25 12 chr6 115518073 115518154 -33998883 + PB1D10 SINE Alu 34 115 -2 5 1466 613 230 7 61 chr6 115518181 115518329 -33998708 - B1_Mur4 SINE Alu 0 150 11 5 1466 336 218 13 13 chr6 115518359 115518438 -33998599 + ID4 SINE ID 2 80 -3 5 1466 2406 151 21 50 chr6 115519804 115520222 -33996815 + RMER4A LTR ERVK 47 452 -14 5 1466 1226 61 7 0 chr6 115520241 115520388 -33996649 - B1_Mus1 SINE Alu 0 148 1 5 1466 1147 181 10 20 chr6 115520957 115521160 -33995877 + B3 SINE B2 1 201 -15 5 1466 180 344 62 23 chr6 115522100 115522228 -33994809 + MIR SINE MIR 62 194 -68 5 1466 450 221 85 19 chr6 115522360 115522466 -33994571 - PB1 SINE Alu 0 127 15 5 1466 235 294 118 8 chr6 115522468 115522595 -33994442 - MIRc SINE MIR -113 155 15 5 1466 298 226 0 45 chr6 115523502 115523590 -33993447 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 1466 262 235 0 45 chr6 115523593 115523771 -33993266 + (TATG)n Simple_repeat Simple_repeat 1 170 0 6 1466 509 313 43 32 chr6 115523896 115524081 -33992956 - B4A SINE B4 -21 271 85 6 1466 21 0 0 0 chr6 115524623 115524644 -33992393 + AT_rich Low_complexity Low_complexity 1 21 0 6 1466 325 285 0 122 chr6 115524647 115524819 -33992218 + MT2B2 LTR ERVL 97 247 -337 6 1466 619 185 19 0 chr6 115524732 115524840 -33992197 + PB1D9 SINE Alu 6 115 -5 6 1466 848 225 112 0 chr6 115524883 115525061 -33991976 + B3 SINE B2 1 198 -18 6 1466 924 170 205 0 chr6 115525082 115525253 -33991784 - B3 SINE B2 -9 207 2 6 1466 754 214 14 14 chr6 115525307 115525454 -33991583 + B1_Mur1 SINE Alu 2 148 -1 6 1466 960 182 39 0 chr6 115526082 115526263 -33990774 + B3A SINE B2 1 188 -10 6 1466 183 42 0 0 chr6 115526269 115526293 -33990744 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 1466 491 188 136 91 chr6 115526304 115526480 -33990557 + B3A SINE B2 15 198 0 7 1466 239 200 22 101 chr6 115526479 115526568 -33990469 - YREP_Mm Unknown Unknown -1480 332 251 7 1466 359 214 57 0 chr6 115526514 115526584 -33990453 + B1F2 SINE Alu 15 88 -61 7 1466 579 96 0 0 chr6 115526600 115526683 -33990354 + (CATA)n Simple_repeat Simple_repeat 2 84 0 7 1466 281 320 8 59 chr6 115528461 115528594 -33988443 - MLT1A1 LTR MaLR -2 406 230 7 1466 1214 54 7 0 chr6 115529341 115529488 -33987549 + B1_Mus1 SINE Alu 1 148 0 7 1466 234 0 0 0 chr6 115529489 115529515 -33987522 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1466 1314 75 43 0 chr6 115529601 115529788 -33987249 - B2_Mm2 SINE B2 0 195 1 7 1466 753 159 67 22 chr6 115530258 115530379 -33986658 + B1_Mur3 SINE Alu 9 138 -11 7 1466 305 47 23 0 chr6 115530379 115530422 -33986615 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 8 1466 753 159 67 22 chr6 115530422 115530435 -33986602 + B1_Mur3 SINE Alu 139 149 0 7 1466 663 226 0 24 chr6 115530608 115530735 -33986302 - RSINE1 SINE B4 -38 127 4 8 1466 270 210 65 0 chr6 115530975 115531037 -33986000 - PB1D10 SINE Alu -12 105 40 8 1466 264 213 98 0 chr6 115531236 115531297 -33985740 + MIRc SINE MIR 86 152 -116 8 1466 955 252 24 9 chr6 115531297 115531509 -33985528 + B4A SINE B4 1 215 -77 8 1466 488 255 342 28 chr6 115531805 115532052 -33984985 + MTE2b LTR MaLR 1 325 -54 8 1466 5123 155 19 64 chr6 115532407 115533398 -33983639 - RMER21A LTR ERV1 0 947 1 8 1466 281 210 32 16 chr6 115533405 115533468 -33983569 + MTE2b LTR MaLR 316 379 0 8 1466 1648 112 24 4 chr6 115533638 115533890 -33983147 - RMER21A LTR ERV1 -23 924 668 8 1466 868 175 135 21 chr6 115534226 115534419 -33982618 - B3 SINE B2 -1 215 1 8 1466 205 171 13 38 chr6 115534561 115534640 -33982397 + CT-rich Low_complexity Low_complexity 2 78 0 8 1466 813 130 31 93 chr6 115534789 115534950 -33982087 + B2_Mm1t SINE B2 29 179 -14 9 1466 337 180 233 128 chr6 115534965 115535137 -33981900 + B2_Mm1t SINE B2 1 190 -3 9 1466 302 258 15 15 chr6 115535211 115535278 -33981759 - ID4_ SINE ID -6 77 11 9 1466 311 221 58 14 chr6 115535616 115535685 -33981352 - PB1 SINE Alu -10 117 46 9 1466 435 307 20 0 chr6 115535771 115535872 -33981165 + RSINE1 SINE B4 63 165 0 9 1466 557 202 35 0 chr6 115535931 115536045 -33980992 + PB1D9 SINE Alu 3 120 0 9 1466 305 234 0 135 chr6 115536141 115536157 -33980880 + MT2B LTR ERVL 153 229 -372 9 1466 372 260 0 0 chr6 115536157 115536230 -33980807 + B1_Mur3 SINE Alu 2 74 -75 9 1466 603 294 95 47 chr6 115536233 115536529 -33980508 - ORR1E LTR MaLR -35 324 15 9 1466 1447 74 16 0 chr6 115536877 115537066 -33979971 + B2_Mm1t SINE B2 2 193 0 9 1466 1072 108 12 29 chr6 115537140 115537230 -33979807 - URR1A DNA MER1_type 0 226 139 1 1466 3702 102 28 30 chr6 115537230 115537798 -33979239 + RMER2 LTR ERV1 1 567 0 1 1466 1072 108 12 29 chr6 115537798 115537879 -33979158 - URR1A DNA MER1_type -88 138 58 1 1466 290 261 135 50 chr6 115537868 115538009 -33979028 + ORR1E LTR MaLR 86 238 -121 1 1466 309 155 69 0 chr6 115538109 115538167 -33978870 - HAL1-2a_MD LINE L1 -617 2407 2346 1 1466 255 246 41 55 chr6 115538195 115538211 -33978826 - ID4 SINE ID -7 76 63 1 1466 1356 48 0 0 chr6 115538211 115538479 -33978558 + (TGG)n Simple_repeat Simple_repeat 1 268 0 1 1466 255 246 41 55 chr6 115538479 115538534 -33978503 - ID4 SINE ID -21 62 6 1 1466 305 333 8 31 chr6 115538766 115538896 -33978141 - L1MD LINE L1 -2937 3209 3083 1 1466 1006 133 28 0 chr6 115538896 115539039 -33977998 - B1_Mus1 SINE Alu 0 148 2 1 1466 357 269 9 36 chr6 115539442 115539554 -33977483 - PB1D10 SINE Alu -3 114 6 1 1466 860 172 21 0 chr6 115539822 115539967 -33977070 - B1_Mus1 SINE Alu 0 148 1 1 1466 288 262 0 16 chr6 115540170 115540232 -33976805 - PB1D10 SINE Alu 0 117 57 1 1466 1154 49 28 7 chr6 115540775 115540918 -33976119 + B1_Mus1 SINE Alu 2 147 -1 1 1466 290 119 0 0 chr6 115540941 115540983 -33976054 + ID_B1 SINE B4 160 201 -23 1 1466 306 222 76 38 chr6 115540983 115541114 -33975923 + L1MEc LINE L1 1760 1895 -4505 1 1466 566 284 87 5 chr6 115541192 115541233 -33975804 - B3 SINE B2 -4 212 169 1 1466 339 25 0 0 chr6 115541233 115541273 -33975764 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1466 566 284 87 5 chr6 115541273 115541426 -33975611 - B3 SINE B2 -48 168 2 1 1466 552 256 21 42 chr6 115541560 115541703 -33975334 + B1F SINE Alu 10 149 0 1 1466 998 109 51 0 chr6 115543210 115543347 -33973690 + B1_Mus2 SINE Alu 2 145 -2 1 1466 268 150 12 12 chr6 115543507 115543588 -33973449 + T-rich Low_complexity Low_complexity 2 82 0 1 1466 1049 102 0 13 chr6 115543595 115543744 -33973293 - B1_Mm SINE Alu 0 147 1 1 1466 1107 99 35 6 chr6 115543953 115544125 -33972912 - URR1A DNA MER1_type 0 226 50 1 1466 489 34 0 0 chr6 115544210 115544269 -33972768 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1466 1392 74 11 0 chr6 115544294 115544470 -33972567 + B2_Mm1t SINE B2 2 179 -14 1 1466 452 61 0 13 chr6 115544483 115544581 -33972456 + B2_Mm2 SINE B2 47 179 -16 1 1466 195 114 0 0 chr6 115545150 115545185 -33971852 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1466 3095 63 37 0 chr6 115545305 115545687 -33971350 + MTA_Mm LTR MaLR 1 396 0 1 1466 2352 60 6 60 chr6 115546227 115546562 -33970475 - ORR1A2 LTR MaLR -8 319 3 1 1466 457 248 53 118 chr6 115546633 115546802 -33970235 - B3A SINE B2 -7 191 34 1 1466 249 163 82 0 chr6 115546811 115546860 -33970177 - B1_Mur3 SINE Alu -24 125 73 1 1466 564 235 206 32 chr6 115546902 115547004 -33970033 - ID_B1 SINE B4 -1 223 98 1 1466 1984 201 39 17 chr6 115547004 115547414 -33969623 + MTD LTR MaLR 1 419 0 1 1466 564 235 206 32 chr6 115547414 115547500 -33969537 - ID_B1 SINE B4 -127 97 2 1 1466 282 333 10 0 chr6 115547629 115547725 -33969312 - Lx8 LINE L1 -129 7344 7248 1 1466 583 193 12 56 chr6 115547824 115547961 -33969076 - B1_Mur1 SINE Alu 0 149 19 1 1466 2606 74 12 0 chr6 115547961 115548284 -33968753 - ORR1A2 LTR MaLR 0 327 1 1 1466 6788 139 165 97 chr6 115548284 115549300 -33967737 - ORR1A2-int LTR MaLR 0 1792 577 1 1466 1214 50 0 0 chr6 115549300 115549441 -33967596 + B1_Mus1 SINE Alu 2 142 -6 1 1466 6788 139 165 97 chr6 115549441 115550076 -33966961 - ORR1A2-int LTR MaLR -1216 576 28 1 1466 2223 92 3 68 chr6 115550074 115550257 -33966780 - ORR1A2 LTR MaLR -10 317 148 1 1466 1274 41 0 0 chr6 115550257 115550404 -33966633 - B1_Mm SINE Alu 0 147 1 1 1466 2223 92 3 68 chr6 115550404 115550559 -33966478 - ORR1A2 LTR MaLR -180 147 1 1 1466 816 243 32 24 chr6 115550580 115550821 -33966216 - Lx8 LINE L1 -572 7124 6884 1 1466 1263 97 46 41 chr6 115550887 115551081 -33965956 - B2_Mm2 SINE B2 0 195 1 1 1466 252 108 0 0 chr6 115551194 115551231 -33965806 + MTD LTR MaLR 257 293 -126 1 1466 408 40 0 0 chr6 115551231 115551281 -33965756 + (TATG)n Simple_repeat Simple_repeat 3 52 0 1 1466 304 125 18 0 chr6 115551312 115551368 -33965669 + Lx8 LINE L1 7415 7471 -2 1 1466 1108 171 34 19 chr6 115551388 115551597 -33965440 + B3 SINE B2 5 216 0 1 1466 230 56 0 27 chr6 115551613 115551650 -33965387 + (CAT)n Simple_repeat Simple_repeat 2 37 0 1 1466 285 89 0 0 chr6 115551904 115551949 -33965088 + (CGGGG)n Simple_repeat Simple_repeat 5 49 0 1 1466 483 264 48 20 chr6 115552552 115552586 -33964451 + B4 SINE B4 54 91 -201 1 1466 856 83 45 0 chr6 115552586 115552719 -33964318 + B1_Mur4 SINE Alu 1 139 -11 1 1466 1197 198 108 43 chr6 115553121 115553461 -33963576 + MTD LTR MaLR 8 409 -10 1 1466 523 198 151 0 chr6 115553637 115553763 -33963274 - B1_Mus2 SINE Alu 0 147 3 1 1466 1272 27 14 0 chr6 115553793 115553939 -33963098 - B1_Mus1 SINE Alu 0 148 1 1 1466 1042 251 136 0 chr6 115554201 115554480 -33962557 - MTEa LTR MaLR -33 346 30 1 1466 578 306 91 5 chr6 115554712 115554899 -33962138 + B3 SINE B2 1 203 -13 1 1466 1218 62 7 0 chr6 115555150 115555296 -33961741 - B1_Mus1 SINE Alu 0 148 2 1 1466 682 209 14 29 chr6 115555383 115555521 -33961516 + B1_Mm SINE Alu 2 137 -10 1 1466 421 256 29 110 chr6 115555545 115555681 -33961356 + PB1 SINE Alu 1 125 -2 1 1466 273 245 163 0 chr6 115555949 115556047 -33960990 - MER68 LTR ERVL -322 241 128 1 1466 315 0 0 0 chr6 115557012 115557047 -33959990 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1466 231 271 17 0 chr6 115557069 115557128 -33959909 - B1F SINE Alu -56 93 34 1 1466 464 224 81 40 chr6 115558056 115558205 -33958832 + MTD LTR MaLR 1 155 -264 1 1466 491 207 18 9 chr6 115558232 115558344 -33958693 + MTD LTR MaLR 296 408 -11 1 1466 259 297 0 0 chr6 115558443 115558507 -33958530 - L1MB1 LINE L1 -186 5982 5919 1 1466 462 161 92 0 chr6 115558510 115558597 -33958440 - L1MB3 LINE L1 -308 5875 5781 1 1466 189 171 0 0 chr6 115558617 115558652 -33958385 + T-rich Low_complexity Low_complexity 1 35 0 1 1466 323 248 131 19 chr6 115558653 115558717 -33958320 - PB1D9 SINE Alu 0 120 49 1 1466 944 249 23 5 chr6 115558717 115558935 -33958102 - ID_B1 SINE B4 -2 222 1 1 1466 323 248 131 19 chr6 115558935 115558977 -33958060 - PB1D9 SINE Alu -72 48 2 1 1466 836 221 11 26 chr6 115559258 115559449 -33957588 - B3 SINE B2 -9 207 20 1 1466 500 236 55 0 chr6 115559765 115559892 -33957145 - ID_B1 SINE B4 -4 220 87 1 1466 549 0 0 0 chr6 115561546 115561607 -33955430 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1466 260 321 91 62 chr6 115562169 115562208 -33954829 + B3A SINE B2 2 40 -158 1 1466 1046 115 0 26 chr6 115562208 115562360 -33954677 + B1_Mus1 SINE Alu 1 148 0 1 1466 260 321 91 62 chr6 115562360 115562496 -33954541 + B3A SINE B2 41 181 -17 1 1466 621 0 0 0 chr6 115562640 115562709 -33954328 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1466 435 300 100 0 chr6 115562709 115562859 -33954178 - B3A SINE B2 -32 166 2 1 1466 223 226 106 12 chr6 115565151 115565236 -33951801 - B1_Mus2 SINE Alu -53 94 2 1 1466 235 175 0 0 chr6 115565201 115565241 -33951796 - B4A SINE B4 -171 121 82 1 1466 180 0 0 0 chr6 115565257 115565277 -33951760 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1466 305 136 8 34 chr6 115565293 115565359 -33951678 - B2_Mm2 SINE B2 -102 114 47 1 1466 1194 108 17 28 chr6 115565406 115565587 -33951450 - B2_Mm1t SINE B2 -14 179 1 1 1466 790 199 7 7 chr6 115565770 115565917 -33951120 - B1_Mur1 SINE Alu -2 147 1 1 1466 330 184 321 0 chr6 115566650 115566759 -33950278 - B1F2 SINE Alu -1 148 5 1 1466 27 0 0 0 chr6 115568614 115568641 -33948396 + AT_rich Low_complexity Low_complexity 1 27 0 1 1466 700 207 89 15 chr6 115570810 115570994 -33946043 + MERVL_2A-int LTR ERVL 1903 2198 -3563 1 1466 1914 151 221 4 chr6 115571004 115571497 -33945540 + MERVL_2A-int LTR ERVL 2313 2912 -2849 1 1466 21 0 0 0 chr6 115571658 115571679 -33945358 + AT_rich Low_complexity Low_complexity 1 21 0 1 1466 656 225 58 0 chr6 115572224 115572362 -33944675 - B1_Mus2 SINE Alu -1 146 1 1 1466 24 32 0 0 chr6 115572663 115572694 -33944343 + AT_rich Low_complexity Low_complexity 1 31 0 1 1466 615 268 124 16 chr6 115573658 115573851 -33943186 - B4A SINE B4 -71 221 8 1 1466 326 209 209 0 chr6 115574481 115574567 -33942470 - B1_Mur2 SINE Alu -10 139 36 1 1466 230 139 0 0 chr6 115574629 115574672 -33942365 + PB1D10 SINE Alu 72 114 -3 1 1466 431 272 18 0 chr6 115577855 115577969 -33939068 - B3A SINE B2 -81 117 2 1 1466 924 234 29 5 chr6 115578183 115578389 -33938648 - B3 SINE B2 -1 215 5 1 1466 552 237 9 0 chr6 115578417 115578531 -33938506 - PB1D10 SINE Alu -2 115 1 1 1466 537 204 0 0 chr6 115578604 115578771 -33938266 + CT-rich Low_complexity Low_complexity 1 167 0 1 1466 862 266 108 4 chr6 115578889 115579149 -33937888 + B4A SINE B4 2 288 -4 1 1466 764 153 15 8 chr6 115579550 115579682 -33937355 + B1_Mur4 SINE Alu 16 148 -2 1 1466 180 0 0 0 chr6 115579962 115579982 -33937055 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1466 1221 41 0 0 chr6 115579982 115580128 -33936909 - B1_Mus2 SINE Alu 0 147 2 1 1466 21 0 0 0 chr6 115580220 115580241 -33936796 + AT_rich Low_complexity Low_complexity 1 21 0 1 1466 254 237 197 0 chr6 115580243 115580319 -33936718 - PB1D10 SINE Alu -26 91 1 1 1466 1176 222 45 25 chr6 115584062 115584348 -33932689 - B4A SINE B4 0 292 1 1 1466 201 147 0 0 chr6 115586417 115586451 -33930586 + (CAA)n Simple_repeat Simple_repeat 1 34 0 1 1466 315 0 0 0 chr6 115586469 115586504 -33930533 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1 1466 560 284 49 75 chr6 115586534 115586804 -33930233 - B4 SINE B4 -10 282 1 1 1466 205 293 0 17 chr6 115586819 115586878 -33930159 + G-rich Low_complexity Low_complexity 5 62 0 1 1466 769 154 35 47 chr6 115586878 115587048 -33929989 + B2_Mm2 SINE B2 28 195 0 1 1466 786 231 35 0 chr6 115587100 115587269 -33929768 - B3A SINE B2 -23 175 1 2 1466 354 134 0 0 chr6 115588273 115588340 -33928697 + (CAT)n Simple_repeat Simple_repeat 2 68 0 2 1466 579 244 7 43 chr6 115589345 115589486 -33927551 + RSINE1 SINE B4 30 165 0 2 1466 471 35 0 0 chr6 115589495 115589552 -33927485 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1466 818 142 7 14 chr6 115589820 115589933 -33927104 + B2_Mm1t SINE B2 2 115 -78 2 1466 246 62 0 0 chr6 115589933 115589965 -33927072 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2 1466 818 142 7 14 chr6 115589965 115589994 -33927043 + B2_Mm1t SINE B2 116 143 -50 2 1466 381 305 29 0 chr6 115590137 115590242 -33926795 + PB1D7 SINE Alu 8 115 -5 2 1466 38 22 0 0 chr6 115592085 115592130 -33924907 + AT_rich Low_complexity Low_complexity 1 45 0 2 1466 374 305 47 9 chr6 115592184 115592290 -33924747 + B3 SINE B2 101 210 -6 2 1466 1152 82 0 0 chr6 115592326 115592473 -33924564 + B1_Mus1 SINE Alu 2 148 0 2 1466 558 0 0 0 chr6 115592474 115592536 -33924501 + (GAGAA)n Simple_repeat Simple_repeat 4 65 0 2 1466 732 103 0 0 chr6 115592538 115592645 -33924392 + (GGA)n Simple_repeat Simple_repeat 2 108 0 2 1466 504 0 0 0 chr6 115592645 115592700 -33924337 + (GAAAA)n Simple_repeat Simple_repeat 3 58 0 2 1466 916 241 19 19 chr6 115593119 115593335 -33923702 + B3 SINE B2 1 216 0 2 1466 24 32 0 0 chr6 115593731 115593762 -33923275 + AT_rich Low_complexity Low_complexity 1 31 0 2 1466 594 207 57 7 chr6 115593893 115594034 -33923003 + B2_Mm2 SINE B2 29 176 -19 2 1466 612 102 0 48 chr6 115594151 115594254 -33922783 - B2_Mm2 SINE B2 -88 107 10 2 1466 21 0 0 0 chr6 115594270 115594291 -33922746 + AT_rich Low_complexity Low_complexity 1 21 0 2 1466 414 0 0 0 chr6 115595627 115595673 -33921364 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1466 232 263 79 0 chr6 115595734 115595810 -33921227 + MER2B DNA MER2_type 232 313 -23 2 1466 404 279 72 22 chr6 115596086 115596100 -33920937 + ID_B1 SINE B4 77 222 -2 2 1466 610 184 104 0 chr6 115596100 115596225 -33920812 + B1_Mur2 SINE Alu 10 147 -2 2 1466 849 39 35 0 chr6 115596230 115596359 -33920678 + B1_Mus2 SINE Alu 1 148 0 2 1466 1137 48 7 33 chr6 115596778 115596929 -33920108 - B1_Mus2 SINE Alu 0 147 1 2 1466 584 160 50 0 chr6 115597115 115597234 -33919803 + B1_Mur2 SINE Alu 25 149 0 2 1466 253 271 14 14 chr6 115597234 115597305 -33919732 + GA-rich Low_complexity Low_complexity 2 72 0 2 1466 183 80 0 0 chr6 115597789 115597814 -33919223 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1466 285 51 0 0 chr6 115598456 115598495 -33918542 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 2 1466 269 179 90 45 chr6 115598526 115598637 -33918400 + PB1D10 SINE Alu 2 117 0 2 1466 241 105 53 0 chr6 115599047 115599085 -33917952 + HAL1 LINE L1 1474 1513 -994 2 1466 565 309 142 18 chr6 115599488 115599946 -33917091 - RMER5 LTR ERV1 -15 519 5 2 1466 251 200 16 48 chr6 115600174 115600237 -33916800 + MER113 DNA MER1_type 151 211 -310 2 1466 385 311 65 19 chr6 115600437 115600591 -33916446 + RSINE1 SINE B4 1 161 -4 2 1466 440 274 52 0 chr6 115600642 115600795 -33916242 + RSINE1 SINE B4 3 163 -2 2 1466 573 226 6 77 chr6 115600956 115601124 -33915913 - B3 SINE B2 -60 156 1 2 1466 225 276 160 20 chr6 115601314 115601414 -33915623 - PB1D10 SINE Alu -3 114 1 2 1466 36 0 0 0 chr6 115601615 115601651 -33915386 + AT_rich Low_complexity Low_complexity 1 36 0 2 1466 1586 176 132 14 chr6 115601757 115602120 -33914917 - MTD LTR MaLR -3 416 11 2 1466 445 183 12 2 chr6 115602125 115602222 -33914815 + L1M4 LINE L1 4590 4690 -1456 2 1466 294 231 181 9 chr6 115602318 115602423 -33914614 + B3 SINE B2 91 213 -3 2 1466 249 159 12 24 chr6 115602471 115602555 -33914482 + (TA)n Simple_repeat Simple_repeat 2 84 0 2 1466 1241 184 0 10 chr6 115602573 115602776 -33914261 - B3 SINE B2 -13 203 3 2 1466 540 194 137 53 chr6 115602784 115602915 -33914122 - B1_Mur1 SINE Alu -5 144 3 2 1466 649 253 38 0 chr6 115603340 115603498 -33913539 - B3A SINE B2 -33 165 2 2 1466 249 250 118 0 chr6 115603856 115603924 -33913113 - Tigger7 DNA MER2_type -1915 576 501 2 1466 180 0 0 0 chr6 115604019 115604039 -33912998 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1466 777 284 36 62 chr6 115604053 115604357 -33912680 - Tigger7 DNA MER2_type -2185 306 11 2 1466 1072 171 52 24 chr6 115604575 115604785 -33912252 + B3 SINE B2 1 216 0 2 1466 230 301 48 12 chr6 115605020 115605104 -33911933 + PB1 SINE Alu 21 107 -20 2 1466 1101 84 0 0 chr6 115605144 115605287 -33911750 + B1_Mus1 SINE Alu 1 143 -5 2 183 328 283 132 0 chr6 115605414 115605573 -33911464 + B3A SINE B2 2 181 -17 2 1467 32 43 0 0 chr6 115605573 115605619 -33911418 + AT_rich Low_complexity Low_complexity 1 46 0 2 1467 420 281 51 22 chr6 115605656 115605794 -33911243 + ID_B1 SINE B4 81 222 -2 2 1467 805 266 37 25 chr6 115605919 115606162 -33910875 + B4A SINE B4 2 247 -45 2 1467 1952 184 53 22 chr6 115606425 115606786 -33910251 + Lx9 LINE L1 6346 6717 -927 2 1467 668 189 15 15 chr6 115606786 115606920 -33910117 - B3A SINE B2 -64 134 1 2 1467 564 184 95 8 chr6 115607401 115607527 -33909510 - B1F1 SINE Alu 0 149 13 2 1467 1343 179 49 156 chr6 115607557 115607896 -33909141 - ORR1C2 LTR MaLR 0 384 86 2 1467 809 171 27 0 chr6 115607896 115608042 -33908995 - B1_Mur4 SINE Alu 0 150 1 2 1467 1343 179 49 156 chr6 115608042 115608132 -33908905 - ORR1C2 LTR MaLR -299 85 1 2 1467 358 200 82 0 chr6 115608340 115608424 -33908613 + B4A SINE B4 137 227 -65 2 1467 294 308 51 0 chr6 115608424 115608502 -33908535 + RSINE1 SINE B4 2 83 -82 2 1467 431 223 96 10 chr6 115608533 115608637 -33908400 + PB1D9 SINE Alu 1 113 -7 2 1467 424 183 49 0 chr6 115608800 115608882 -33908155 + B1_Mur2 SINE Alu 33 118 -31 2 1467 285 29 0 0 chr6 115608882 115608916 -33908121 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 2 1467 555 331 32 6 chr6 115609122 115609280 -33907757 + B4A SINE B4 3 164 -128 2 1467 507 329 59 50 chr6 115609255 115609476 -33907561 + B4A SINE B4 62 284 -8 2 1467 183 100 0 0 chr6 115609480 115609510 -33907527 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1467 401 95 0 16 chr6 115609663 115609727 -33907310 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 2 1467 726 170 14 49 chr6 115609758 115609900 -33907137 + B1_Mur4 SINE Alu 6 142 -8 2 1467 181 30 0 83 chr6 115609905 115609941 -33907096 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1467 243 200 22 0 chr6 115609976 115610021 -33907016 - ID4_ SINE ID -29 54 9 2 1467 353 304 35 56 chr6 115610061 115610204 -33906833 + B3 SINE B2 47 186 -30 2 1467 285 301 99 99 chr6 115610391 115610675 -33906362 + MTEa LTR MaLR 72 355 -24 2 1467 242 224 121 0 chr6 115611040 115611098 -33905939 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 2 1467 850 236 34 10 chr6 115611114 115611319 -33905718 + B3 SINE B2 1 210 -6 2 1467 269 197 150 50 chr6 115611367 115611447 -33905590 + ID_B1 SINE B4 137 224 0 2 1467 1088 53 0 0 chr6 115611734 115611866 -33905171 - B1_Mus1 SINE Alu -15 133 2 2 1467 289 205 29 202 chr6 115612154 115612207 -33904830 + PB1D9 SINE Alu 1 54 -66 2 1467 1074 45 0 43 chr6 115612207 115612347 -33904690 + B1_Mus2 SINE Alu 1 134 -13 2 1467 306 50 0 0 chr6 115612347 115612387 -33904650 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2 1467 289 125 223 42 chr6 115612387 115612472 -33904565 + PB1D9 SINE Alu 42 147 -2 2 1467 230 305 20 50 chr6 115612694 115612794 -33904243 + ID_B1 SINE B4 108 204 -20 2 1467 297 231 30 30 chr6 115612853 115612920 -33904117 + B1F SINE Alu 83 149 0 2 1467 551 317 63 21 chr6 115612928 115613118 -33903919 + B3A SINE B2 1 198 0 2 1467 648 255 60 0 chr6 115613142 115613291 -33903746 + RSINE1 SINE B4 4 161 -4 2 1467 1057 43 57 0 chr6 115613484 115613624 -33903413 - B1_Mus1 SINE Alu 0 148 1 2 1467 904 259 29 0 chr6 115613641 115613846 -33903191 - B3 SINE B2 -5 211 1 2 1467 1441 57 6 0 chr6 115613962 115614138 -33902899 + B2_Mm2 SINE B2 1 177 -18 2 1467 345 192 279 0 chr6 115614171 115614275 -33902762 + B1_Mur3 SINE Alu 17 149 0 2 1467 313 246 14 14 chr6 115614469 115614539 -33902498 + B1_Mur2 SINE Alu 70 139 -10 2 1467 252 333 24 12 chr6 115614616 115614698 -33902339 + ID4_ SINE ID 1 83 0 2 1467 242 220 0 78 chr6 115615530 115615594 -33901443 - ID4 SINE ID -23 60 2 2 1467 344 288 27 0 chr6 115615594 115615700 -33901337 - PB1D10 SINE Alu -2 118 7 2 1467 420 236 11 11 chr6 115616074 115616164 -33900873 - B3 SINE B2 -120 96 7 2 1467 664 247 20 50 chr6 115616191 115616391 -33900646 + B3A SINE B2 1 194 -4 2 1467 606 184 8 31 chr6 115616396 115616525 -33900512 + B1_Mus1 SINE Alu 2 127 -21 2 1467 186 133 0 0 chr6 115617200 115617230 -33899807 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 2 1467 715 221 15 7 chr6 115617670 115617807 -33899230 + B1_Mur1 SINE Alu 10 147 -2 2 1467 507 277 0 0 chr6 115617838 115617950 -33899087 + RSINE1 SINE B4 6 117 -48 2 1467 304 287 0 113 chr6 115617999 115618105 -33898932 + PB1D7 SINE Alu 17 110 -10 2 1467 302 335 157 66 chr6 115618127 115618325 -33898712 + ORR1E LTR MaLR 1 216 -143 2 1467 398 280 62 14 chr6 115618352 115618497 -33898540 + ID_B1 SINE B4 67 218 -6 2 1467 369 281 0 53 chr6 115618521 115618615 -33898422 + PB1D10 SINE Alu 5 93 -24 3 1467 517 302 39 8 chr6 115618622 115618749 -33898288 + RSINE1 SINE B4 3 133 -32 3 1467 189 74 0 0 chr6 115618760 115618787 -33898250 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 3 1467 1709 21 0 0 chr6 115619113 115619301 -33897736 - B2_Mm1a SINE B2 -5 188 1 3 1467 401 257 195 0 chr6 115619332 115619445 -33897592 + RSINE1 SINE B4 4 138 -27 3 1467 596 293 16 65 chr6 115619449 115619635 -33897402 + B3A SINE B2 8 184 -14 3 1467 514 259 54 0 chr6 115619663 115619775 -33897262 + ID_B1 SINE B4 100 217 -7 3 1467 477 208 209 94 chr6 115619790 115619981 -33897056 + B3 SINE B2 4 216 0 3 1467 664 278 39 34 chr6 115620005 115620174 -33896863 + ID_B1 SINE B4 45 215 -9 3 1467 1289 20 0 0 chr6 115620174 115620321 -33896716 + B1_Mm SINE Alu 1 147 0 3 1467 396 0 0 0 chr6 115620453 115620497 -33896540 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1467 2253 287 111 23 chr6 115620586 115621457 -33895580 + Lx8 LINE L1 6240 7187 -286 3 1467 238 319 87 0 chr6 115621497 115621566 -33895471 + ID4_ SINE ID 3 77 -6 3 1467 232 328 0 69 chr6 115621507 115621579 -33895458 + ID SINE ID 21 87 -137 3 1467 756 161 21 28 chr6 115621780 115621921 -33895116 + B1_Mur3 SINE Alu 1 140 -9 3 1467 1205 54 0 0 chr6 115622021 115622168 -33894869 + B1_Mus2 SINE Alu 1 147 0 3 1467 242 335 26 62 chr6 115622488 115622531 -33894506 + B4A SINE B4 48 81 -211 3 1467 378 291 72 36 chr6 115622531 115622644 -33894393 + PB1D10 SINE Alu 3 122 -27 3 1467 993 224 5 28 chr6 115622644 115622860 -33894177 - B3 SINE B2 -4 212 2 3 1467 364 291 72 36 chr6 115622860 115622885 -33894152 + B1F1 SINE Alu 123 145 -4 3 1467 720 249 68 24 chr6 115622888 115623094 -33893943 + B3 SINE B2 2 216 0 3 1467 698 237 142 21 chr6 115623157 115623347 -33893690 + B3 SINE B2 1 213 -3 3 1467 724 175 31 8 chr6 115623695 115623822 -33893215 + B1_Mur1 SINE Alu 19 148 -1 3 1467 196 287 85 35 chr6 115625241 115625382 -33891655 + L2c LINE L2 2983 3130 -257 3 1467 22 0 0 0 chr6 115626166 115626188 -33890849 + GC_rich Low_complexity Low_complexity 1 22 0 3 1467 387 267 11 22 chr6 115627017 115627109 -33889928 + ID_B1 SINE B4 80 170 -54 3 1467 491 243 37 0 chr6 115627027 115627134 -33889903 + PB1D10 SINE Alu 7 117 0 3 1467 889 131 0 21 chr6 115627299 115627439 -33889598 - B1_Mur4 SINE Alu 0 150 14 3 1467 486 265 71 75 chr6 115627304 115627516 -33889521 - B4 SINE B4 -71 221 11 3 1467 348 219 14 0 chr6 115627562 115627635 -33889402 + RSINE1 SINE B4 78 151 -14 3 1467 948 268 91 28 chr6 115627686 115628081 -33888956 - L1MB5 LINE L1 -34 6140 5721 3 1467 275 188 31 15 chr6 115628083 115628148 -33888889 - MTE2b LTR MaLR 0 379 314 3 1467 779 250 60 11 chr6 115628189 115628371 -33888666 + B3 SINE B2 20 210 -6 3 1467 1013 270 66 50 chr6 115628365 115628647 -33888390 - MTE2b LTR MaLR -54 325 37 3 1467 1071 155 86 10 chr6 115628647 115628856 -33888181 - URR1B DNA MER1_type 0 225 1 3 1467 1013 270 66 50 chr6 115628856 115628893 -33888144 - MTE2b LTR MaLR -343 36 1 3 1467 642 234 8 0 chr6 115628970 115629098 -33887939 - B1_Mur1 SINE Alu -7 142 14 3 1467 784 243 15 82 chr6 115629124 115629330 -33887707 - B3A SINE B2 -6 192 1 3 1467 670 24 0 0 chr6 115629639 115629724 -33887313 + L1Md_T LINE L1 6498 6582 0 3 1467 192 77 0 0 chr6 115629747 115629773 -33887264 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 3 1467 573 283 27 6 chr6 115629892 115630080 -33886957 + B3 SINE B2 1 198 0 3 1467 1246 95 11 43 chr6 115630094 115630281 -33886756 - B2_Mm2 SINE B2 -14 181 1 3 1467 200 132 0 26 chr6 115630297 115630336 -33886701 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 1467 195 349 56 19 chr6 115630401 115630509 -33886528 - MIRc SINE MIR -120 148 37 3 1467 1407 86 5 0 chr6 115630528 115630715 -33886322 + B2_Mm1a SINE B2 2 189 -4 3 1467 462 271 9 9 chr6 115630729 115630837 -33886200 + PB1D10 SINE Alu 1 108 -9 3 1467 186 274 137 50 chr6 115631345 115631506 -33885531 - L2b LINE L2 -124 3251 3077 3 1467 247 338 37 15 chr6 115631794 115631844 -33885193 - MLT1G1 LTR MaLR -437 142 91 3 1467 1367 61 39 0 chr6 115631844 115632024 -33885013 + B2_Mm1a SINE B2 3 189 -4 3 1467 247 338 37 15 chr6 115632024 115632108 -33884929 - MLT1G1 LTR MaLR -489 90 6 3 1467 1154 80 85 11 chr6 115632171 115632347 -33884690 + B2_Mm2 SINE B2 2 190 -5 3 1467 760 228 83 39 chr6 115632355 115632560 -33884477 + B3 SINE B2 3 216 0 3 1467 1148 57 0 0 chr6 115632600 115632740 -33884297 - B1_Mus1 SINE Alu -8 140 1 3 1467 1282 116 21 0 chr6 115633017 115633207 -33883830 + B2_Mm2 SINE B2 2 195 0 3 1467 410 229 176 8 chr6 115633542 115633661 -33883376 - ID_B1 SINE B4 -5 219 81 3 1467 595 214 148 11 chr6 115633681 115633870 -33883167 - B3 SINE B2 0 216 2 3 1467 444 354 0 0 chr6 115633876 115634020 -33883017 - B1F SINE Alu -5 144 1 3 1467 1947 94 65 36 chr6 115634055 115634100 -33882937 - ORR1A2 LTR MaLR -8 319 285 3 1467 1622 46 0 5 chr6 115634100 115634295 -33882742 - B2_Mm2 SINE B2 -1 194 1 3 1467 1947 112 66 43 chr6 115634295 115634735 -33882302 - ORR1A2 LTR MaLR -43 351 2 3 1467 1917 92 91 7 chr6 115634737 115635015 -33882022 - MT2B2 LTR ERVL -106 478 176 3 1467 3717 154 45 31 chr6 115635015 115635697 -33881340 - RLTR17 LTR ERVK 0 692 1 3 1467 1935 162 17 53 chr6 115635713 115636124 -33880913 - RMER3D-int LTR ERVK -29 2813 2418 3 1467 851 121 6 88 chr6 115636121 115636303 -33880734 - RMER3D-int LTR ERVK -657 2185 2019 3 1467 1219 148 3 10 chr6 115636303 115636511 -33880526 - MT2B2 LTR ERVL -293 200 1 3 1467 360 179 21 275 chr6 115636343 115636536 -33880501 - ORR1A2-int LTR MaLR -1231 732 589 3 1467 236 220 0 39 chr6 115636624 115636676 -33880361 + polypurine Low_complexity Low_complexity 5 54 0 3 1467 419 264 30 10 chr6 115636714 115636832 -33880205 + PB1D10 SINE Alu 2 116 -1 3 1467 2125 209 148 8 chr6 115636860 115637372 -33879665 + RMER19B LTR ERVK 304 887 -15 3 1467 200 179 0 49 chr6 115637374 115637415 -33879622 + polypurine Low_complexity Low_complexity 1 39 0 3 1467 21 0 0 0 chr6 115637417 115637438 -33879599 + AT_rich Low_complexity Low_complexity 1 21 0 3 1467 1217 41 14 0 chr6 115637453 115637598 -33879439 + B1_Mm SINE Alu 1 147 0 3 1467 339 85 0 0 chr6 115637598 115637645 -33879392 + (A)n Simple_repeat Simple_repeat 1 47 0 3 1467 220 342 38 0 chr6 115637656 115637735 -33879302 + ID SINE ID 1 82 -142 3 1467 207 0 0 0 chr6 115637790 115637813 -33879224 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1467 585 209 96 0 chr6 115637838 115637953 -33879084 + RSINE1 SINE B4 3 128 -37 3 1467 208 297 62 0 chr6 115638300 115638364 -33878673 + MIRc SINE MIR 88 155 -113 3 1467 245 331 49 14 chr6 115638468 115638612 -33878425 - L1M5 LINE L1 -468 5656 5508 3 1467 230 284 44 15 chr6 115638941 115639009 -33878028 - ID4_ SINE ID -9 74 5 3 1467 342 61 0 0 chr6 115639042 115639091 -33877946 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1467 1287 72 0 0 chr6 115639094 115639403 -33877634 + (TG)n Simple_repeat Simple_repeat 1 309 0 3 1467 619 239 66 22 chr6 115639409 115639546 -33877491 - RSINE1 SINE B4 -7 158 16 3 1467 405 0 0 0 chr6 115639552 115639597 -33877440 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1467 804 226 81 10 chr6 115639611 115639808 -33877229 + B3 SINE B2 2 212 -4 3 1467 496 246 55 16 chr6 115639830 115639958 -33877079 - B1_Mur1 SINE Alu 0 149 17 3 1467 421 150 0 0 chr6 115640047 115640127 -33876910 + L1Md_F2 LINE L1 6503 6582 0 3 1467 397 265 50 87 chr6 115640138 115640176 -33876861 + U1 snRNA snRNA 6 42 -123 3 1467 992 212 61 0 chr6 115640176 115640374 -33876663 + B3 SINE B2 1 210 -6 3 1467 397 265 50 87 chr6 115640374 115640496 -33876541 + U1 snRNA snRNA 43 160 -5 3 1467 264 270 157 0 chr6 115640521 115640610 -33876427 + PB1D9 SINE Alu 3 105 -15 3 1467 243 0 0 0 chr6 115640613 115640640 -33876397 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1467 234 0 0 0 chr6 115640676 115640702 -33876335 + (CCA)n Simple_repeat Simple_repeat 1 26 0 3 1467 1104 147 5 35 chr6 115640775 115640932 -33876105 + B2_Mm2 SINE B2 2 158 -37 3 1467 315 0 0 0 chr6 115640932 115640967 -33876070 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 1467 582 15 0 0 chr6 115640968 115641035 -33876002 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 3 1467 1104 147 5 35 chr6 115641035 115641060 -33875977 + B2_Mm2 SINE B2 159 180 -15 3 1467 1142 95 0 0 chr6 115641060 115641208 -33875829 + B1_Mus1 SINE Alu 1 148 0 3 1467 1104 147 5 35 chr6 115641208 115641219 -33875818 + B2_Mm2 SINE B2 181 191 -4 3 1467 230 254 40 53 chr6 115641232 115641307 -33875730 + ID4_ SINE ID 2 75 -8 3 1467 4441 217 77 78 chr6 115641312 115641740 -33875297 + RMER12 LTR ERVK 1 425 -897 3 1467 1166 71 0 0 chr6 115641740 115641880 -33875157 + B1_Mus1 SINE Alu 2 141 -7 3 1467 4441 217 77 78 chr6 115641880 115642774 -33874263 + RMER12 LTR ERVK 426 1322 0 3 1467 250 309 25 0 chr6 115642934 115643015 -33874022 - ID4 SINE ID 0 83 1 3 1467 703 153 203 59 chr6 115643021 115643040 -33873997 - B3 SINE B2 -2 214 198 3 1467 213 39 0 0 chr6 115643040 115643066 -33873971 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 1467 703 153 203 59 chr6 115643066 115643233 -33873804 - B3 SINE B2 -19 197 1 3 1467 610 248 20 40 chr6 115643252 115643403 -33873634 - ID_B1 SINE B4 -8 216 69 3 1467 266 263 10 69 chr6 115643538 115643640 -33873397 + MIRc SINE MIR 21 116 -152 3 1467 444 193 91 0 chr6 115643647 115643735 -33873302 - ID_B1 SINE B4 0 224 129 3 1467 336 296 7 144 chr6 115643769 115643915 -33873122 + MIR SINE MIR 110 235 -27 3 1467 183 80 0 0 chr6 115643926 115643951 -33873086 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 1467 442 314 19 19 chr6 115644046 115644208 -33872829 - MIRb SINE MIR -57 211 50 3 1467 225 254 16 0 chr6 115645045 115645108 -33871929 - B1F SINE Alu -85 64 1 3 1467 339 25 0 0 chr6 115645412 115645452 -33871585 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 1467 336 244 58 11 chr6 115645743 115645830 -33871207 - MIRb SINE MIR -90 178 88 4 1467 325 200 0 0 chr6 115645860 115645924 -33871113 - ID4 SINE ID -77 75 12 4 1467 237 108 0 0 chr6 115645997 115646034 -33871003 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 4 1467 495 257 9 28 chr6 115646083 115646191 -33870846 + B1_Mur1 SINE Alu 38 143 -6 4 1467 253 220 44 0 chr6 115646203 115646294 -33870743 + GA-rich Low_complexity Low_complexity 2 96 0 4 1467 743 279 17 0 chr6 115646797 115646976 -33870061 + B3A SINE B2 1 182 -16 4 1467 754 238 86 146 chr6 115646982 115647225 -33869812 + RLTR9C LTR ERVK 1 233 -160 4 1467 1156 93 71 11 chr6 115647225 115647409 -33869628 - B2_Mm2 SINE B2 0 195 1 4 1467 754 238 86 146 chr6 115647409 115647583 -33869454 + RLTR9C LTR ERVK 234 393 0 4 1467 233 353 16 32 chr6 115648171 115648294 -33868743 + MLT1H1 LTR MaLR 253 373 -182 4 1467 378 0 0 0 chr6 115648469 115648511 -33868526 + (TTTTA)n Simple_repeat Simple_repeat 4 45 0 4 1467 364 304 11 0 chr6 115648513 115648605 -33868432 - PB1D7 SINE Alu -11 109 17 4 1467 4102 101 43 109 chr6 115648854 115649059 -33867978 - RLTR33 LTR ERVK 0 678 527 4 1467 1398 68 0 45 chr6 115649059 115649260 -33867777 - B2_Mm2 SINE B2 0 195 4 4 1467 4102 101 43 109 chr6 115649260 115649272 -33867765 - RLTR33 LTR ERVK -152 526 526 4 1467 1314 84 5 73 chr6 115649272 115649477 -33867560 - B2_Mm1t SINE B2 -2 191 1 4 1467 4102 101 43 109 chr6 115649477 115649982 -33867055 - RLTR33 LTR ERVK -152 526 3 4 1467 246 176 153 56 chr6 115650218 115650290 -33866747 - B3A SINE B2 -119 79 1 4 1467 865 203 0 0 chr6 115650314 115650462 -33866575 - B1_Mur4 SINE Alu 0 150 3 4 1467 578 206 145 0 chr6 115650473 115650604 -33866433 - B3 SINE B2 0 216 67 4 1467 394 214 0 22 chr6 115650851 115650942 -33866095 + PB1D9 SINE Alu 32 120 0 4 1467 662 252 12 31 chr6 115651478 115651638 -33865399 - B3A SINE B2 -30 168 12 4 1467 389 222 73 3 chr6 115652072 115652180 -33864857 - PB1D10 SINE Alu 0 120 3 4 1467 580 275 18 48 chr6 115652248 115652416 -33864621 - RSINE1 SINE B4 0 165 3 4 1467 321 236 76 68 chr6 115652426 115652544 -33864493 - PB1D9 SINE Alu 0 120 2 4 1467 990 201 9 83 chr6 115652599 115652827 -33864210 - B3 SINE B2 -5 211 1 4 1467 360 64 0 0 chr6 115653290 115653337 -33863700 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 4 1467 1177 71 0 0 chr6 115653360 115653501 -33863536 + B1_Mus2 SINE Alu 1 141 -6 4 1467 189 0 0 0 chr6 115653502 115653523 -33863514 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 4 1467 572 207 38 90 chr6 115653593 115653726 -33863311 - B3A SINE B2 -72 126 1 4 1467 832 190 0 14 chr6 115653804 115653948 -33863089 + B1_Mur1 SINE Alu 7 148 -1 4 1467 866 229 23 23 chr6 115653971 115654186 -33862851 - B3 SINE B2 0 216 2 4 1467 1470 45 17 0 chr6 115654208 115654385 -33862652 - B2_Mm2 SINE B2 -14 181 2 4 1467 1417 50 50 0 chr6 115654396 115654575 -33862462 - B2_Mm1t SINE B2 -5 188 1 4 1467 685 258 86 53 chr6 115654576 115654785 -33862252 - B3A SINE B2 0 216 1 4 1467 1212 171 245 33 chr6 115655261 115655563 -33861474 - ORR1D2 LTR MaLR -4 366 1 4 1467 568 316 42 76 chr6 115655698 115656054 -33860983 - MTEa LTR MaLR -35 344 1 4 1467 252 0 0 0 chr6 115656245 115656273 -33860764 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1467 222 37 0 0 chr6 115656756 115656783 -33860254 + (TATG)n Simple_repeat Simple_repeat 4 30 0 4 1467 486 70 0 0 chr6 115656814 115656885 -33860152 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1467 266 313 80 72 chr6 115656896 115657034 -33860003 - B2_Mm2 SINE B2 -56 139 1 4 1467 738 62 0 0 chr6 115657052 115657148 -33859889 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 4 1467 437 0 0 19 chr6 115657148 115657202 -33859835 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1467 740 214 6 0 chr6 115658003 115658181 -33858856 + GA-rich Low_complexity Low_complexity 2 180 0 4 1467 982 209 133 9 chr6 115658351 115658698 -33858339 - MTD LTR MaLR -15 404 1 4 1467 290 339 17 9 chr6 115659112 115659228 -33857809 - MLT1A1 LTR MaLR 0 408 292 4 1467 450 310 25 37 chr6 115659509 115659670 -33857367 - RSINE1 SINE B4 -2 163 5 4 1467 817 212 102 11 chr6 115660162 115660348 -33856689 - B3 SINE B2 -10 206 4 4 1467 345 227 26 39 chr6 115660453 115660531 -33856506 - MTEa LTR MaLR -39 340 264 4 1467 303 333 68 23 chr6 115660875 115661007 -33856030 - MER2 DNA MER2_type -2 343 206 4 1467 454 281 67 92 chr6 115660980 115661014 -33856023 + CYRA11_Mm Unknown Y-chromosome 138 165 -452 4 1467 1141 171 42 23 chr6 115661014 115661229 -33855808 - URR1B DNA MER1_type 0 225 7 4 1467 341 252 61 0 chr6 115661234 115661333 -33855704 - MER2 DNA MER2_type -154 191 87 4 1467 357 261 33 33 chr6 115661320 115661411 -33855626 - B1F SINE Alu -55 94 4 4 1467 245 361 0 0 chr6 115661430 115661491 -33855546 - MER2 DNA MER2_type -284 61 1 4 1467 1118 88 0 13 chr6 115661616 115661765 -33855272 - B1_Mus2 SINE Alu 0 147 1 4 1467 850 149 198 39 chr6 115661785 115661967 -33855070 - B3 SINE B2 -1 215 5 4 1467 679 266 39 28 chr6 115661967 115662145 -33854892 + B3A SINE B2 11 190 -8 4 1467 481 233 20 119 chr6 115662396 115662547 -33854490 - B1F SINE Alu -13 136 1 4 1467 398 148 110 33 chr6 115662577 115662668 -33854369 + MIR SINE MIR 71 168 -94 4 1467 647 183 23 15 chr6 115662843 115662976 -33854061 - B1F SINE Alu -15 134 1 4 1467 529 211 222 6 chr6 115663219 115663386 -33853651 - ID_B1 SINE B4 -20 204 2 4 1467 202 351 0 0 chr6 115663429 115663486 -33853551 + MER5A DNA MER1_type 17 73 -116 4 1467 605 307 102 15 chr6 115663578 115663783 -33853254 - B4A SINE B4 -68 224 2 4 1467 351 223 219 16 chr6 115663793 115663916 -33853121 - B1F SINE Alu -1 148 1 4 1467 333 0 0 0 chr6 115663980 115664017 -33853020 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1467 244 213 21 0 chr6 115664190 115664237 -33852800 + B1F SINE Alu 17 64 -85 4 1467 224 250 39 0 chr6 115664347 115664399 -33852638 + PB1 SINE Alu 73 126 -1 4 1467 417 242 70 10 chr6 115664412 115664512 -33852525 + RSINE1 SINE B4 17 122 -43 4 1467 296 183 0 58 chr6 115664654 115664698 -33852339 - RMER17C LTR ERVK -133 277 235 4 1467 406 0 18 18 chr6 115664698 115664753 -33852284 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1467 296 183 0 58 chr6 115664753 115664795 -33852242 - RMER17C LTR ERVK -176 234 196 4 1467 484 267 97 46 chr6 115664821 115665017 -33852020 - B3 SINE B2 -10 206 1 4 1467 504 260 77 39 chr6 115665038 115665194 -33851843 - B3A SINE B2 -9 189 28 4 1467 1814 220 69 18 chr6 115665221 115665669 -33851368 - Lx5 LINE L1 -5 7045 6575 4 1467 505 279 24 8 chr6 115665789 115665912 -33851125 - ID_B1 SINE B4 -12 212 88 4 1467 828 168 7 28 chr6 115666159 115666300 -33850737 + B1_Mur1 SINE Alu 11 148 -1 4 1467 1645 149 89 51 chr6 115666480 115666875 -33850162 - RMER17C LTR ERVK 0 410 1 4 1467 293 292 11 0 chr6 115666889 115666978 -33850059 - B3A SINE B2 -46 152 63 4 1467 251 320 66 39 chr6 115667026 115667208 -33849829 - MTEa LTR MaLR -2 377 191 4 1467 1081 242 96 50 chr6 115667221 115667650 -33849387 + RMER15 LTR ERVL 21 532 -43 4 1467 480 18 0 0 chr6 115667650 115667707 -33849330 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1467 1081 241 99 29 chr6 115667707 115667730 -33849307 + RMER15 LTR ERVL 533 571 -4 4 1467 284 0 28 0 chr6 115667761 115667797 -33849240 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1467 599 117 10 0 chr6 115668551 115668654 -33848383 + (TC)n Simple_repeat Simple_repeat 2 105 0 4 1467 711 283 24 6 chr6 115668673 115668840 -33848197 - B3A SINE B2 -23 175 6 4 1467 222 200 43 58 chr6 115668860 115668929 -33848108 + B4A SINE B4 78 145 -147 4 1467 386 224 61 0 chr6 115668885 115668983 -33848054 + PB1D9 SINE Alu 17 120 0 4 1467 500 161 19 0 chr6 115669011 115669166 -33847871 + GA-rich Low_complexity Low_complexity 23 180 0 4 1467 588 132 18 54 chr6 115669170 115669282 -33847755 + B1_Mur3 SINE Alu 42 149 0 4 1467 750 225 9 95 chr6 115669495 115669706 -33847331 + B3A SINE B2 5 197 -1 4 1467 249 274 50 125 chr6 115669765 115669965 -33847072 - B2_Mm1t SINE B2 -5 188 4 4 1467 549 280 14 27 chr6 115669822 115669969 -33847068 - RSINE1 SINE B4 -20 145 1 4 1467 442 293 100 62 chr6 115669969 115670340 -33846697 - L1M5 LINE L1 -431 5809 5425 4 1467 2067 104 148 9 chr6 115670374 115670713 -33846324 - ORR1B1 LTR MaLR -8 386 1 4 1467 457 250 0 46 chr6 115670772 115670902 -33846135 + BC1_Mm scRNA scRNA 2 125 -27 4 1467 514 126 23 11 chr6 115670953 115671041 -33845996 + PB1D9 SINE Alu 26 114 -6 4 1467 1128 67 0 0 chr6 115671050 115671185 -33845852 + B1_Mus1 SINE Alu 2 136 -12 4 1467 288 0 0 0 chr6 115671185 115671217 -33845820 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4 1467 277 262 54 72 chr6 115671309 115671420 -33845617 - B4A SINE B4 -1 291 183 4 1467 326 263 139 20 chr6 115671371 115671472 -33845565 - PB1D9 SINE Alu 0 120 8 4 1467 2181 151 82 13 chr6 115671513 115671890 -33845147 - MTC LTR MaLR -8 413 11 4 1467 853 185 14 7 chr6 115671890 115672037 -33845000 + B1_Mur4 SINE Alu 1 148 -2 4 1467 737 173 35 21 chr6 115672063 115672205 -33844832 + B1_Mur4 SINE Alu 7 150 0 4 1467 203 105 53 0 chr6 115672205 115672243 -33844794 + CT-rich Low_complexity Low_complexity 3 42 0 4 1467 2952 202 76 168 chr6 115672246 115673369 -33843668 - RMER1B Other Other -3 1063 45 4 1467 232 323 20 59 chr6 115673881 115673983 -33843054 - LTR16B2 LTR ERVL -7 473 376 5 1467 3380 147 80 10 chr6 115673992 115674592 -33842445 + RLTR26 LTR ERVK 1 642 0 5 1467 314 241 146 11 chr6 115674620 115674804 -33842233 - LTR16B2 LTR ERVL -154 309 103 5 1467 262 265 84 0 chr6 115674937 115675020 -33842017 - ORR1E LTR MaLR -248 111 22 5 1467 884 126 123 19 chr6 115675601 115675763 -33841274 - B2_Mm2 SINE B2 -16 179 1 5 1467 295 257 20 14 chr6 115675767 115675853 -33841184 - ID4 SINE ID -47 105 18 5 1467 233 254 0 82 chr6 115675796 115675869 -33841168 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 5 1467 1573 43 11 0 chr6 115675870 115676054 -33840983 - B2_Mm1t SINE B2 -7 186 1 5 1467 458 226 43 17 chr6 115676080 115676197 -33840840 - PB1D7 SINE Alu 0 120 1 5 1467 1233 54 0 0 chr6 115676303 115676450 -33840587 - B1_Mus2 SINE Alu 0 147 1 5 1467 468 301 79 12 chr6 115676528 115676693 -33840344 - B4A SINE B4 -116 176 1 5 1467 461 266 43 10 chr6 115676706 115676822 -33840215 - PB1D10 SINE Alu 0 147 22 5 1467 363 260 63 24 chr6 115676824 115676882 -33840155 - L1M3 LINE L1 -451 5738 5674 5 1467 1712 31 0 0 chr6 115676882 115677074 -33839963 - B2_Mm1t SINE B2 -1 192 1 5 1467 363 254 57 16 chr6 115677074 115677155 -33839882 - L1M3 LINE L1 -498 5673 5594 5 1467 24 77 0 0 chr6 115677155 115677207 -33839830 + AT_rich Low_complexity Low_complexity 1 52 0 5 1467 882 219 0 130 chr6 115677210 115677457 -33839580 - B3 SINE B2 0 216 2 5 1467 419 228 76 84 chr6 115677459 115677572 -33839465 - B3 SINE B2 -4 191 63 5 1467 1374 151 186 19 chr6 115677572 115677889 -33839148 - ORR1D1 LTR MaLR -3 371 2 5 1467 419 224 17 93 chr6 115677889 115677958 -33839079 - B3 SINE B2 -154 62 1 5 1467 502 322 0 0 chr6 115678079 115678200 -33838837 - B1F2 SINE Alu -13 136 16 5 1467 313 401 0 40 chr6 115678200 115678227 -33838810 - ID_B1 SINE B4 -13 211 70 5 1467 552 170 0 0 chr6 115678318 115678412 -33838625 + B1_Mur4 SINE Alu 23 116 -34 5 1467 880 263 22 11 chr6 115678419 115678641 -33838396 - ID_B1 SINE B4 -63 229 4 5 1467 360 0 0 0 chr6 115678644 115678684 -33838353 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1467 924 259 43 14 chr6 115678877 115679085 -33837952 + ID_B1 SINE B4 11 224 0 5 1467 319 268 14 0 chr6 115679953 115680024 -33837013 + ID4 SINE ID 6 77 -6 5 1467 223 208 20 20 chr6 115680256 115680305 -33836732 + ID4 SINE ID 31 79 -4 5 1467 234 0 0 0 chr6 115681298 115681324 -33835713 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1467 422 259 18 53 chr6 115681368 115681482 -33835555 - PB1D10 SINE Alu -6 111 2 5 1467 726 204 0 60 chr6 115681482 115681497 -33835540 - B1_Mur1 SINE Alu -14 135 125 5 1467 282 116 0 0 chr6 115681497 115681540 -33835497 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1467 726 204 0 60 chr6 115681540 115681665 -33835372 - B1_Mur1 SINE Alu -25 124 1 5 1467 207 0 0 0 chr6 115681666 115681689 -33835348 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1467 303 284 137 69 chr6 115681690 115681762 -33835275 - PB1D9 SINE Alu -11 109 29 5 1467 3349 29 134 14 chr6 115681762 115682014 -33835023 + IAPLTR2_Mm LTR ERVK 1 269 -206 5 1467 1665 37 0 0 chr6 115682014 115682204 -33834833 - B2_Mm1a SINE B2 -2 191 2 5 1467 3349 29 134 14 chr6 115682204 115682375 -33834662 + IAPLTR2_Mm LTR ERVK 270 474 -1 5 1467 303 284 137 69 chr6 115682375 115682404 -33834633 - PB1D9 SINE Alu -92 28 1 5 1467 622 304 0 33 chr6 115682479 115682659 -33834378 - B3A SINE B2 -24 174 1 5 1467 508 246 33 0 chr6 115683074 115683196 -33833841 + B1_Mur3 SINE Alu 17 142 -7 5 1467 1170 139 111 24 chr6 115684137 115684344 -33832693 - URR1A DNA MER1_type 0 226 2 5 1467 334 292 0 62 chr6 115685110 115685223 -33831814 + B3A SINE B2 87 192 -6 5 1467 805 184 100 11 chr6 115685223 115685406 -33831631 + B3 SINE B2 1 210 -6 5 1467 1348 77 27 21 chr6 115685878 115686064 -33830973 - B2_Mm2 SINE B2 -5 190 4 5 1467 862 162 132 21 chr6 115686654 115686843 -33830194 + B3 SINE B2 1 210 -6 5 1467 642 153 0 0 chr6 115687226 115687337 -33829700 + (CAT)n Simple_repeat Simple_repeat 2 112 0 5 1467 260 242 15 29 chr6 115687340 115687408 -33829629 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 5 1467 211 323 71 20 chr6 115687461 115687559 -33829478 - MIRb SINE MIR -1 267 165 5 1467 912 210 9 57 chr6 115687593 115687720 -33829317 + B3 SINE B2 3 123 -93 5 1467 1430 90 16 0 chr6 115687720 115687908 -33829129 - B2_Mm2 SINE B2 -4 191 1 5 1467 912 210 9 57 chr6 115687908 115687992 -33829045 + B3 SINE B2 124 204 -12 5 1467 547 236 46 79 chr6 115688211 115688363 -33828674 - RSINE1 SINE B4 -17 148 2 5 1467 1383 86 5 5 chr6 115688384 115688571 -33828466 - B2_Mm2 SINE B2 -7 188 2 5 1467 419 147 0 14 chr6 115688697 115688766 -33828271 + B1_Mur2 SINE Alu 81 148 -1 5 1467 423 345 35 10 chr6 115689832 115689992 -33827045 - MER2 DNA MER2_type -1 344 185 5 1467 1200 61 7 0 chr6 115689992 115690139 -33826898 + B1_Mus1 SINE Alu 1 148 0 5 1467 422 345 35 10 chr6 115690139 115690177 -33826860 - MER2 DNA MER2_type -161 184 142 5 1467 498 202 237 0 chr6 115690244 115690358 -33826679 - B1F2 SINE Alu -8 141 1 5 1467 180 0 0 0 chr6 115690565 115690585 -33826452 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1467 294 241 138 0 chr6 115690588 115690675 -33826362 - PB1D10 SINE Alu 0 117 19 5 1467 274 310 31 87 chr6 115690707 115690733 -33826304 - PB1D7 SINE Alu 0 120 1 5 1467 501 204 314 7 chr6 115690733 115690834 -33826203 - ID_B1 SINE B4 -23 201 82 5 1467 276 30 0 0 chr6 115690834 115690867 -33826170 + (CTGTG)n Simple_repeat Simple_repeat 2 34 0 5 1467 501 204 314 7 chr6 115690867 115690918 -33826119 - ID SINE ID -143 81 2 5 1467 281 315 65 118 chr6 115691076 115691245 -33825792 + MIR SINE MIR 95 254 -8 5 1467 644 125 233 0 chr6 115691285 115691405 -33825632 - B1_Mus1 SINE Alu 0 148 1 5 1467 414 0 0 0 chr6 115691424 115691470 -33825567 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1467 230 343 14 0 chr6 115691470 115691540 -33825497 - ID2 SINE ID -11 72 2 5 1467 300 176 0 0 chr6 115691560 115691628 -33825409 + GA-rich Low_complexity Low_complexity 2 69 0 5 1467 1007 55 0 8 chr6 115692522 115692650 -33824387 - B1_Mus1 SINE Alu 0 148 22 5 1467 945 184 0 0 chr6 115692665 115692812 -33824225 - B1_Mur1 SINE Alu 0 149 3 5 1467 479 278 43 0 chr6 115692881 115692996 -33824041 - RSINE1 SINE B4 -35 130 11 5 1467 330 333 138 52 chr6 115693146 115693415 -33823622 + B4 SINE B4 1 292 0 5 1467 213 232 113 28 chr6 115693658 115693729 -33823308 + B3 SINE B2 80 156 -60 5 1467 1892 133 88 3 chr6 115693731 115694062 -33822975 + ORR1B2 LTR MaLR 1 359 -8 5 1467 259 197 33 0 chr6 115694061 115694122 -33822915 + B3 SINE B2 151 213 -3 5 1467 208 265 94 24 chr6 115694276 115694361 -33822676 - MIRb SINE MIR -76 192 102 5 1467 242 247 119 36 chr6 115694635 115694719 -33822318 + MLT1J LTR MaLR 56 146 -366 5 1467 557 143 42 16 chr6 115694796 115695118 -33821919 + (TG)n Simple_repeat Simple_repeat 1 330 0 5 1467 325 295 35 18 chr6 115695387 115695501 -33821536 - MIR SINE MIR -87 175 60 5 1467 1481 214 129 78 chr6 115695756 115696077 -33820960 + RLTR20C LTR ERVK 1 327 -207 5 1467 1318 114 16 0 chr6 115696077 115696261 -33820776 + B2_Mm2 SINE B2 1 187 -8 5 1467 1481 214 129 78 chr6 115696261 115696352 -33820685 + RLTR20C LTR ERVK 328 429 -105 5 1467 315 0 0 0 chr6 115696352 115696387 -33820650 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1467 333 0 0 0 chr6 115696387 115696423 -33820614 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1467 1481 214 129 78 chr6 115696423 115696505 -33820532 + RLTR20C LTR ERVK 430 521 -13 5 1467 207 0 0 0 chr6 115696730 115696753 -33820284 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1467 234 0 0 0 chr6 115697073 115697099 -33819938 + (TTGTG)n Simple_repeat Simple_repeat 4 29 0 5 1467 280 211 113 0 chr6 115697103 115697174 -33819863 - ID4 SINE ID -4 79 1 5 1467 548 219 26 10 chr6 115697189 115697333 -33819704 - B1_Mur1 SINE Alu 0 150 6 5 1467 395 279 33 75 chr6 115697351 115697471 -33819566 - PB1D10 SINE Alu -2 115 1 5 1467 243 316 0 0 chr6 115697504 115697561 -33819476 - MIR SINE MIR -63 145 89 5 1467 279 197 26 90 chr6 115697736 115697814 -33819223 - PB1 SINE Alu -2 125 53 5 1467 397 219 113 128 chr6 115697891 115698032 -33819005 - B3A SINE B2 -51 147 9 5 1467 378 61 0 0 chr6 115698032 115698081 -33818956 + (CCCCAG)n Simple_repeat Simple_repeat 3 51 0 5 1467 460 243 32 108 chr6 115698462 115698619 -33818418 + B4 SINE B4 79 223 -69 5 1467 866 168 7 0 chr6 115698479 115698622 -33818415 + B1_Mur2 SINE Alu 6 149 0 5 1467 533 74 0 36 chr6 115698627 115698711 -33818326 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 5 1467 822 309 106 72 chr6 115698724 115699000 -33818037 + ID_B1 SINE B4 7 291 -1 5 1467 316 53 0 0 chr6 115699004 115699042 -33817995 + RLTR18B LTR ERVK 3 40 -472 5 1467 243 270 289 39 chr6 115699084 115699292 -33817745 - MER21B LTR ERV1 -565 298 39 5 1467 271 259 23 34 chr6 115699346 115699434 -33817603 - MLT1D LTR MaLR -5 500 414 5 1467 343 133 78 26 chr6 115699443 115699520 -33817517 - ID4_ SINE ID 0 83 3 5 1467 249 273 37 49 chr6 115699565 115699646 -33817391 - MLT1D LTR MaLR -83 422 343 5 1467 405 277 142 9 chr6 115699651 115699764 -33817273 - ID_B1 SINE B4 -11 213 86 5 1467 1183 68 0 0 chr6 115699806 115699952 -33817085 - B1_Mus1 SINE Alu -2 146 1 5 1467 1189 97 34 0 chr6 115699952 115700127 -33816910 - B2_Mm2 SINE B2 -13 182 1 5 1467 986 238 135 0 chr6 115700389 115700633 -33816404 - 7SLRNA srpRNA srpRNA -37 277 1 5 1467 398 242 210 31 chr6 115700756 115700918 -33816119 - B3A SINE B2 -6 192 2 5 1467 356 59 0 19 chr6 115700971 115701023 -33816014 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1467 831 276 63 15 chr6 115701045 115701313 -33815724 - B4A SINE B4 -10 282 2 5 1467 660 276 76 49 chr6 115702558 115702783 -33814254 + B4 SINE B4 2 232 -60 5 1467 897 211 103 0 chr6 115702785 115702979 -33814058 + B3 SINE B2 3 216 0 6 1467 527 252 165 15 chr6 115703105 115703238 -33813799 + RSINE1 SINE B4 5 157 -8 6 1467 609 274 52 26 chr6 115703529 115703720 -33813317 - ID_B1 SINE B4 -26 198 3 6 1467 469 188 148 0 chr6 115703737 115703838 -33813199 - PB1D10 SINE Alu 0 117 2 6 1467 974 237 176 8 chr6 115704201 115704373 -33812664 - MTEb LTR MaLR -6 353 179 6 1467 288 0 0 0 chr6 115704373 115704405 -33812632 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 1467 974 217 184 7 chr6 115704405 115704546 -33812491 - MTEb LTR MaLR -195 184 3 6 1467 421 302 0 28 chr6 115704553 115704662 -33812375 - PB1D10 SINE Alu 0 117 12 6 1467 647 183 92 0 chr6 115705361 115705492 -33811545 - B1_Mur2 SINE Alu 0 149 7 6 1467 269 275 108 77 chr6 115705385 115705515 -33811522 - MT2B LTR ERVL -330 271 138 6 1467 334 273 110 26 chr6 115705696 115705850 -33811187 + Charlie7 DNA MER1_type 357 523 -2089 6 1467 468 0 0 0 chr6 115706253 115706305 -33810732 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1467 998 256 90 9 chr6 115706306 115706649 -33810388 + L1MB7 LINE L1 5291 5661 -519 6 1467 1194 43 0 21 chr6 115706649 115706793 -33810244 + B1_Mus1 SINE Alu 1 141 -7 6 1467 762 234 28 0 chr6 115706828 115706973 -33810064 + RSINE1 SINE B4 17 165 0 6 1467 315 296 17 17 chr6 115707017 115707134 -33809903 + L1MB7 LINE L1 5652 5768 -410 6 1467 624 252 20 107 chr6 115707234 115707340 -33809697 + ID_B1 SINE B4 2 224 0 6 1467 1087 65 0 0 chr6 115707340 115707478 -33809559 + B1_Mus2 SINE Alu 10 147 0 6 1467 249 207 0 147 chr6 115707482 115707550 -33809487 + RSINE1 SINE B4 108 165 0 6 1467 305 314 81 44 chr6 115707639 115707799 -33809238 + L1MB7 LINE L1 6004 6169 -15 6 1467 789 227 0 0 chr6 115707807 115707939 -33809098 - ID_B1 SINE B4 -11 213 82 6 1467 227 300 30 98 chr6 115707822 115707955 -33809082 - MT2B2 LTR ERVL -308 276 153 6 1467 186 171 0 0 chr6 115707955 115707996 -33809041 + GA-rich Low_complexity Low_complexity 1 41 0 6 1467 216 0 0 0 chr6 115707999 115708023 -33809014 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1467 258 32 0 0 chr6 115708178 115708209 -33808828 + (CCA)n Simple_repeat Simple_repeat 3 33 0 6 1467 333 294 66 16 chr6 115708582 115708703 -33808334 - MIR3 SINE MIR -26 182 56 6 1467 446 306 111 16 chr6 115710106 115710295 -33806742 + L2a LINE L2 3017 3223 -203 6 1467 271 20 51 136 chr6 115710295 115710413 -33806624 + (CCTG)n Simple_repeat Simple_repeat 2 109 0 6 1467 225 0 0 0 chr6 115710632 115710657 -33806380 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 6 1467 233 330 0 46 chr6 115710666 115710774 -33806263 + MER5A DNA MER1_type 7 109 -80 6 1467 225 197 70 70 chr6 115711299 115711370 -33805667 + MIRm SINE MIR 120 190 -86 6 1467 396 0 0 0 chr6 115711545 115711589 -33805448 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1467 583 241 0 17 chr6 115711659 115711777 -33805260 + PB1D7 SINE Alu 2 117 -3 6 1467 220 342 163 7 chr6 115711791 115711944 -33805093 - MIRb SINE MIR -75 193 17 6 1467 501 170 0 41 chr6 115712023 115712170 -33804867 + CT-rich Low_complexity Low_complexity 1 141 0 6 1467 225 203 174 0 chr6 115712170 115712239 -33804798 - ID4 SINE ID 0 83 3 6 1467 339 244 63 81 chr6 115712515 115712653 -33804384 - ZP3AR Satellite Satellite -32 135 1 6 1467 563 213 40 93 chr6 115712665 115712815 -33804222 - B1_Mur2 SINE Alu -6 143 2 6 1467 239 352 27 18 chr6 115712838 115712948 -33804089 - MIR SINE MIR -65 143 33 6 1467 396 317 0 0 chr6 115713256 115713360 -33803677 + PB1D10 SINE Alu 4 107 -10 6 1467 234 0 0 0 chr6 115713364 115713390 -33803647 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1467 575 292 6 25 chr6 115713652 115713810 -33803227 + RSINE1 SINE B4 5 159 -6 6 1467 571 239 112 2 chr6 115713901 115714043 -33802994 + ID_B1 SINE B4 78 232 -60 6 1467 589 201 126 7 chr6 115714672 115714807 -33802230 + B3A SINE B2 1 151 -47 6 1467 507 17 0 0 chr6 115714812 115714872 -33802165 + (CATA)n Simple_repeat Simple_repeat 4 63 0 6 1467 630 227 53 0 chr6 115715003 115715135 -33801902 - RSINE1 SINE B4 -23 142 4 6 1467 1242 61 0 0 chr6 115715150 115715297 -33801740 + B1_Mus2 SINE Alu 1 147 0 6 1467 201 39 0 0 chr6 115715301 115715327 -33801710 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 6 1467 677 256 74 42 chr6 115715654 115715745 -33801292 + B4A SINE B4 2 91 -201 6 1467 1073 126 13 195 chr6 115715745 115715981 -33801056 + B2_Mm2 SINE B2 2 194 -1 6 1467 450 272 71 35 chr6 115715986 115716127 -33800910 + B1F1 SINE Alu 1 146 -3 6 1467 677 256 74 42 chr6 115716127 115716245 -33800792 + B4A SINE B4 97 224 -68 6 1467 1377 81 32 0 chr6 115716249 115716434 -33800603 + B2_Mm2 SINE B2 1 191 -4 6 1467 402 340 39 0 chr6 115716441 115716597 -33800440 + RSINE1 SINE B4 3 164 -1 6 1467 579 284 68 63 chr6 115716626 115716833 -33800204 - B3 SINE B2 -6 210 3 6 1467 1603 211 68 3 chr6 115716872 115717096 -33799941 + ORR1D1 LTR MaLR 1 228 -146 6 1467 334 13 107 0 chr6 115717096 115717171 -33799866 + (CCTG)n Simple_repeat Simple_repeat 4 86 0 6 1467 1603 211 68 3 chr6 115717171 115717297 -33799740 + ORR1D1 LTR MaLR 229 374 0 6 1467 894 181 7 0 chr6 115717297 115717435 -33799602 + B1_Mur3 SINE Alu 3 141 -8 6 1467 201 74 0 0 chr6 115717438 115717465 -33799572 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 6 1467 250 209 0 0 chr6 115717536 115717579 -33799458 + RSINE1 SINE B4 87 129 -36 6 1467 413 270 18 106 chr6 115717579 115717749 -33799288 - ORR1D2 LTR MaLR -98 261 107 6 1467 773 254 55 5 chr6 115717768 115717970 -33799067 + B3 SINE B2 5 216 0 6 1467 1109 68 0 81 chr6 115717982 115718142 -33798895 - B1_Mm SINE Alu 0 147 1 6 1467 529 168 0 1 chr6 115718164 115718262 -33798775 - ORR1D2 LTR MaLR -262 97 1 6 1467 299 282 25 13 chr6 115718262 115718339 -33798698 - RSINE1 SINE B4 -85 80 3 6 1467 432 0 0 0 chr6 115718837 115718885 -33798152 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 6 1467 1154 78 0 0 chr6 115718887 115719029 -33798008 - B1_Mus1 SINE Alu -6 142 1 6 1467 22 0 0 0 chr6 115719185 115719207 -33797830 + AT_rich Low_complexity Low_complexity 1 22 0 6 1467 1430 71 22 0 chr6 115719443 115719626 -33797411 - B2_Mm2 SINE B2 -6 189 3 6 1467 287 202 130 33 chr6 115720484 115720576 -33796461 + ORR1E LTR MaLR 178 278 -81 6 1467 1341 193 161 4 chr6 115720981 115721300 -33795737 - ORR1D2 LTR MaLR -2 392 1 6 1467 663 136 18 214 chr6 115721541 115721709 -33795328 + B1_Mur4 SINE Alu 2 136 -14 6 1467 1321 79 15 45 chr6 115721709 115721908 -33795129 - B2_Mm2 SINE B2 -1 194 2 6 1467 247 186 0 0 chr6 115721950 115721993 -33795044 + B3A SINE B2 3 45 -153 6 1467 411 80 293 89 chr6 115721985 115722108 -33794929 - B2_Mm2 SINE B2 -1 194 47 6 1467 1319 97 11 0 chr6 115722140 115722316 -33794721 - B2_Mm1t SINE B2 -14 179 2 6 1467 1222 149 11 0 chr6 115722317 115722498 -33794539 + B3 SINE B2 29 211 -5 6 1467 702 270 46 6 chr6 115722728 115722876 -33794161 + B3A SINE B2 1 156 -42 6 1467 297 0 0 0 chr6 115722876 115722909 -33794128 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1467 702 270 46 6 chr6 115722909 115722935 -33794102 + B3A SINE B2 157 182 -16 6 1467 458 163 22 0 chr6 115722935 115723027 -33794010 + (CATATA)n Simple_repeat Simple_repeat 1 94 0 6 1467 363 280 56 62 chr6 115723031 115723191 -33793846 - L1MCa LINE L1 -4545 1963 1805 6 1467 353 294 36 27 chr6 115723493 115723605 -33793432 - PB1D10 SINE Alu 0 117 5 6 1467 405 266 51 95 chr6 115723661 115723697 -33793340 + MT2B LTR ERVL 127 156 -445 6 1467 883 172 14 0 chr6 115723697 115723842 -33793195 + B1_Mm SINE Alu 1 147 0 6 1467 261 0 0 0 chr6 115724024 115724053 -33792984 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1467 1530 0 0 0 chr6 115724363 115724533 -33792504 + (GA)n Simple_repeat Simple_repeat 1 170 0 6 1467 252 243 88 61 chr6 115725648 115725762 -33791275 + MIR SINE MIR 10 126 -136 6 1467 259 340 53 0 chr6 115725986 115726080 -33790957 - L3b LINE CR1 -29 453 355 6 1467 962 133 25 0 chr6 115726740 115726898 -33790139 - URR1A DNA MER1_type 0 226 65 6 1467 315 0 0 0 chr6 115726901 115726936 -33790101 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1467 186 287 0 0 chr6 115727107 115727194 -33789843 + (TATG)n Simple_repeat Simple_repeat 1 87 0 6 1467 201 39 0 0 chr6 115727248 115727274 -33789763 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1467 1441 70 21 0 chr6 115727431 115727618 -33789419 - B2_Mm1a SINE B2 -1 192 2 6 1467 1703 241 26 44 chr6 115727638 115727968 -33789069 + MTC LTR MaLR 1 324 -97 6 1467 3494 28 2 2 chr6 115727968 115728364 -33788673 - MTA_Mm LTR MaLR 0 396 1 6 1467 1703 241 26 44 chr6 115728364 115728462 -33788575 + MTC LTR MaLR 325 421 0 6 1467 555 190 34 189 chr6 115729311 115729389 -33787648 + B1_Mur1 SINE Alu 1 64 -85 6 1467 1274 27 0 0 chr6 115729389 115729536 -33787501 - B1_Mus1 SINE Alu 0 148 2 6 1467 555 190 34 189 chr6 115729536 115729632 -33787405 + B1_Mur1 SINE Alu 65 148 -1 6 1467 560 227 93 142 chr6 115730002 115730167 -33786870 - B3A SINE B2 0 198 39 6 1467 1039 129 7 0 chr6 115730167 115730314 -33786723 - B1_Mus1 SINE Alu 0 148 1 6 1467 560 227 93 142 chr6 115730314 115730353 -33786684 - B3A SINE B2 -160 38 4 6 1467 188 231 42 84 chr6 115730357 115730428 -33786609 - MIRc SINE MIR -138 130 63 6 1467 986 106 154 31 chr6 115730460 115730655 -33786382 + URR1A DNA MER1_type 1 219 -7 6 1467 593 155 48 0 chr6 115731942 115732045 -33784992 + B1_Mur2 SINE Alu 33 140 -9 6 1467 360 208 43 78 chr6 115732045 115732057 -33784980 + ID_B1 SINE B4 114 224 0 6 1467 212 269 215 0 chr6 115732956 115733049 -33783988 - MIRb SINE MIR -77 191 79 6 1467 885 156 0 22 chr6 115733370 115733508 -33783529 + B1_Mur3 SINE Alu 2 136 -13 6 1467 274 270 52 39 chr6 115733993 115734070 -33782967 - ID4_ SINE ID -4 79 2 6 1467 525 259 21 7 chr6 115734083 115734223 -33782814 - B1F SINE Alu -7 142 1 7 1467 285 283 75 11 chr6 115735538 115735631 -33781406 - MER115 DNA Tip100 -82 611 513 7 1467 906 179 194 6 chr6 115735735 115735915 -33781122 + B3 SINE B2 3 216 0 7 1467 802 212 20 0 chr6 115736199 115736345 -33780692 + B3A SINE B2 2 150 -48 7 1467 336 24 0 0 chr6 115736347 115736388 -33780649 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1467 953 146 26 0 chr6 115736396 115736547 -33780490 + URR1B DNA MER1_type 19 173 -52 7 1468 1147 50 21 7 chr6 115737832 115737973 -33779064 - B1_Mus2 SINE Alu 0 147 5 7 1468 1409 98 5 0 chr6 115737982 115738175 -33778862 - B2_Mm2 SINE B2 -1 194 1 7 1468 229 338 36 43 chr6 115738671 115738810 -33778227 + MIRb SINE MIR 43 180 -88 7 1468 241 312 62 42 chr6 115739150 115739294 -33777743 + MIRb SINE MIR 46 192 -76 7 1468 259 330 94 33 chr6 115739931 115740207 -33776830 - L2 LINE L2 -585 2834 2542 7 1468 1147 102 0 0 chr6 115740309 115740456 -33776581 + B1_Mus2 SINE Alu 1 147 0 7 1468 344 282 6 78 chr6 115740721 115740839 -33776198 - MLT1A0 LTR MaLR -239 120 1 7 1468 297 0 0 0 chr6 115743283 115743316 -33773721 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1468 183 188 0 0 chr6 115743336 115743384 -33773653 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1468 360 176 0 0 chr6 115743404 115743506 -33773531 + (TG)n Simple_repeat Simple_repeat 2 103 0 7 1468 1105 232 10 0 chr6 115743640 115743847 -33773190 - B3 SINE B2 -6 210 2 7 1468 466 253 179 77 chr6 115743899 115744005 -33773032 + MER2 DNA MER2_type 22 131 -214 7 1468 472 304 71 21 chr6 115744005 115744146 -33772891 - RSINE1 SINE B4 -14 151 4 7 1468 466 253 179 77 chr6 115744146 115744274 -33772763 + MER2 DNA MER2_type 132 280 -65 7 1468 771 112 0 0 chr6 115744451 115744567 -33772470 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 7 1468 189 0 0 0 chr6 115744572 115744593 -33772444 + (CTGGGG)n Simple_repeat Simple_repeat 4 24 0 7 1468 279 309 0 0 chr6 115744595 115744663 -33772374 + ID4_ SINE ID 16 83 0 7 1468 383 233 216 0 chr6 115744678 115744794 -33772243 + B1_Mus2 SINE Alu 1 141 -6 7 1468 311 290 81 135 chr6 115744852 115745111 -33771926 - MTEb LTR MaLR -21 358 114 7 1468 441 194 114 19 chr6 115745375 115745480 -33771557 - PB1D7 SINE Alu 0 120 6 7 1468 1076 225 14 9 chr6 115746634 115746656 -33770381 - B3 SINE B2 0 216 194 7 1468 195 42 0 0 chr6 115746656 115746680 -33770357 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1468 1076 225 14 9 chr6 115746680 115746872 -33770165 - B3 SINE B2 -23 193 1 7 1468 718 218 53 12 chr6 115746881 115747037 -33770000 - ID_B1 SINE B4 -69 223 67 7 1468 296 272 43 21 chr6 115747080 115747174 -33769863 - MIRb SINE MIR -73 195 100 7 1468 359 243 0 0 chr6 115747401 115747471 -33769566 + ID4 SINE ID 4 73 -10 7 1468 915 150 0 33 chr6 115748873 115749025 -33768012 - B1_Mur3 SINE Alu 0 149 3 7 1468 658 261 0 73 chr6 115749025 115749051 -33767986 - ID_B1 SINE B4 0 224 60 7 1468 293 267 0 51 chr6 115749032 115749111 -33767926 - MLT1D LTR MaLR -75 430 356 7 1468 384 270 62 9 chr6 115749247 115749387 -33767650 + MIRb SINE MIR 28 171 -91 7 1468 303 209 144 44 chr6 115749388 115749478 -33767559 - PB1D10 SINE Alu 0 117 19 7 1468 520 266 89 0 chr6 115749442 115749566 -33767471 - ID_B1 SINE B4 -88 136 2 7 1468 243 238 0 0 chr6 115749616 115749658 -33767379 + tRNA-Ala-GCY_ tRNA tRNA 7 48 -27 7 1468 414 0 0 0 chr6 115749659 115749705 -33767332 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1468 1117 63 35 0 chr6 115750172 115750314 -33766723 + B1_Mm SINE Alu 1 147 0 7 1468 1070 134 25 56 chr6 115750585 115750783 -33766254 - B2_Mm2 SINE B2 -2 193 2 7 1468 1176 88 140 0 chr6 115750788 115750959 -33766078 - B2_Mm2 SINE B2 0 195 1 7 1468 273 160 0 20 chr6 115750965 115751016 -33766021 - B1_Mur4 SINE Alu -1 149 100 7 1468 760 147 7 79 chr6 115751237 115751377 -33765660 - B1_Mur3 SINE Alu 0 149 20 7 1468 362 286 72 108 chr6 115751239 115751462 -33765575 - B4 SINE B4 -69 223 9 7 1468 198 71 0 0 chr6 115752366 115752394 -33764643 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1468 280 77 39 0 chr6 115752474 115752526 -33764511 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1468 251 236 0 0 chr6 115752526 115752581 -33764456 - B4A SINE B4 -22 270 216 7 1468 387 143 367 0 chr6 115752592 115752690 -33764347 - B1_Mus1 SINE Alu -8 140 7 7 1468 229 240 20 0 chr6 115752688 115752738 -33764299 - B4 SINE B4 -117 175 125 7 1468 285 180 148 0 chr6 115752764 115752825 -33764212 - B3A SINE B2 -128 70 1 7 1468 228 306 32 16 chr6 115752778 115752841 -33764196 - ZP3AR Satellite Satellite -124 88 25 7 1468 252 0 0 0 chr6 115752913 115752941 -33764096 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1468 620 272 13 123 chr6 115753101 115753336 -33763701 - ID_B1 SINE B4 -15 209 1 7 1468 1209 28 14 0 chr6 115753435 115753580 -33763457 + B1_Mus2 SINE Alu 1 147 0 7 1468 258 349 9 78 chr6 115754567 115754682 -33762355 + PB1 SINE Alu 1 107 -20 7 1468 1222 54 7 0 chr6 115755141 115755288 -33761749 + B1_Mus1 SINE Alu 1 148 0 7 1468 357 162 43 14 chr6 115757293 115757362 -33759675 + ID4_ SINE ID 3 73 -10 7 1468 349 206 96 0 chr6 115757473 115757546 -33759491 + B3 SINE B2 2 81 -135 7 1468 321 276 79 30 chr6 115757608 115757709 -33759328 + RSINE1 SINE B4 27 132 -33 7 1468 1124 88 0 0 chr6 115759284 115759432 -33757605 + B1_Mus1 SINE Alu 1 148 0 7 1468 296 213 0 32 chr6 115759471 115759534 -33757503 + B1_Mus2 SINE Alu 2 62 -85 7 1468 786 238 83 0 chr6 115759611 115759804 -33757233 + B3 SINE B2 2 210 -6 7 1468 1361 52 87 0 chr6 115759809 115759981 -33757056 - B2_Mm2 SINE B2 -8 187 1 7 1468 207 0 0 0 chr6 115759997 115760020 -33757017 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1468 704 148 98 0 chr6 115760021 115760143 -33756894 - B1_Mus1 SINE Alu -13 135 2 7 1468 184 246 123 0 chr6 115760191 115760248 -33756789 - L2 LINE L2 -1407 2012 1949 7 1468 185 118 176 0 chr6 115760259 115760293 -33756744 - L2 LINE L2 -1523 1896 1857 7 1468 1305 130 27 40 chr6 115761500 115761725 -33755312 - URR1B DNA MER1_type -3 222 1 7 1468 327 247 39 0 chr6 115761774 115761851 -33755186 - ID4_ SINE ID -3 80 1 7 1468 963 133 0 45 chr6 115762315 115762454 -33754583 + B1_Mur4 SINE Alu 1 138 -12 7 1468 288 0 0 0 chr6 115762454 115762486 -33754551 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 7 1468 963 133 0 45 chr6 115762486 115762503 -33754534 + B1_Mur4 SINE Alu 139 150 0 7 1468 1212 61 0 13 chr6 115762910 115763059 -33753978 + B1_Mus1 SINE Alu 2 148 0 7 1468 215 132 0 36 chr6 115763059 115763114 -33753923 + A-rich Low_complexity Low_complexity 6 58 0 7 1468 339 125 0 0 chr6 115763386 115763429 -33753608 + (TCC)n Simple_repeat Simple_repeat 1 43 0 7 1468 1073 91 14 0 chr6 115763429 115763572 -33753465 - B1_Mm SINE Alu -1 146 2 7 1468 339 125 0 0 chr6 115763572 115763584 -33753453 + (TCC)n Simple_repeat Simple_repeat 1 12 0 7 1468 226 200 0 0 chr6 115763584 115763624 -33753413 + ORR1E LTR MaLR 22 61 -298 7 1468 180 0 0 0 chr6 115763985 115764005 -33753032 + (CACAC)n Simple_repeat Simple_repeat 5 24 0 7 1468 516 309 0 7 chr6 115764798 115764935 -33752102 - RSINE1 SINE B4 -21 144 9 7 1468 220 308 12 37 chr6 115764863 115764944 -33752093 - B3A SINE B2 -119 79 1 7 1468 423 0 0 0 chr6 115764981 115765028 -33752009 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1468 446 278 122 0 chr6 115765070 115765185 -33751852 - RSINE1 SINE B4 -34 131 3 7 1468 225 309 0 0 chr6 115765449 115765517 -33751520 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1468 780 193 0 36 chr6 115766677 115766817 -33750220 - B1_Mur1 SINE Alu -1 148 14 7 1468 453 259 0 129 chr6 115766829 115766881 -33750156 - PB1D10 SINE Alu -9 108 64 7 1468 986 95 153 12 chr6 115766881 115767051 -33749986 - B2_Mm2 SINE B2 0 195 2 7 1468 453 259 0 129 chr6 115767051 115767122 -33749915 - PB1D10 SINE Alu -54 63 1 7 1468 285 354 26 0 chr6 115767127 115767240 -33749797 - MIRb SINE MIR -124 144 29 7 1468 983 133 0 20 chr6 115767708 115767854 -33749183 + B1_Mur3 SINE Alu 1 143 -6 7 1468 207 0 0 0 chr6 115767857 115767880 -33749157 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1468 245 231 46 128 chr6 115768955 115769064 -33747973 + MamGypLTR1b LTR Gypsy 628 727 -55 7 1468 26 0 0 0 chr6 115769131 115769157 -33747880 + AT_rich Low_complexity Low_complexity 1 26 0 7 1468 794 240 87 29 chr6 115769174 115769380 -33747657 + ID_B1 SINE B4 7 224 0 7 1468 508 257 62 102 chr6 115769593 115769818 -33747219 - ID_B1 SINE B4 -7 217 2 7 1468 207 296 0 0 chr6 115770368 115770422 -33746615 + L2c LINE L2 3078 3131 -256 7 1468 1253 164 471 19 chr6 115770562 115770884 -33746153 + MT2A LTR ERVL 1 492 -41 7 1468 484 66 26 13 chr6 115770884 115770961 -33746076 + (CATA)n Simple_repeat Simple_repeat 4 81 0 7 1468 1253 164 471 19 chr6 115770961 115771005 -33746032 + MT2A LTR ERVL 493 533 0 7 1468 956 234 34 0 chr6 115771252 115771461 -33745576 - B3 SINE B2 0 216 1 7 1468 655 72 0 0 chr6 115771534 115771617 -33745420 + BC1_Mm scRNA scRNA 2 84 -68 7 1468 722 222 131 0 chr6 115771803 115771979 -33745058 - B3 SINE B2 -13 203 5 7 1468 309 254 50 83 chr6 115773020 115773140 -33743897 + MLT1F LTR MaLR 433 548 0 7 1468 190 208 20 40 chr6 115773154 115773204 -33743833 + MIRc SINE MIR 123 171 -97 7 1468 1394 148 22 0 chr6 115774074 115774303 -33742734 - RLTR11A2 LTR ERVK 0 527 294 7 1468 2913 6 3 0 chr6 115774303 115774624 -33742413 + RLTRETN_Mm LTR ERVK 1 322 0 7 1468 33355 24 2 6 chr6 115774624 115779488 -33737549 + MMETn-int LTR ERVK 1 4844 0 7 1468 2897 6 3 0 chr6 115779488 115779809 -33737228 + RLTRETN_Mm LTR ERVK 1 322 0 7 1468 933 221 104 130 chr6 115779809 115779896 -33737141 - RLTR11A2 LTR ERVK -228 299 241 7 1468 1379 88 15 20 chr6 115779896 115780092 -33736945 - B2_Mm2 SINE B2 0 195 1 7 1468 933 221 104 130 chr6 115780092 115780288 -33736749 - RLTR11A2 LTR ERVK -287 240 42 7 1468 269 48 0 45 chr6 115780288 115780332 -33736705 + (CATTA)n Simple_repeat Simple_repeat 2 43 0 8 1468 933 221 104 130 chr6 115780332 115780354 -33736683 - RLTR11A2 LTR ERVK -486 41 3 7 1468 224 242 145 0 chr6 115780362 115780424 -33736613 + MIR SINE MIR 101 171 -91 8 1468 231 236 18 0 chr6 115780464 115780519 -33736518 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 8 1468 294 291 37 25 chr6 115780526 115780607 -33736430 - ID2 SINE ID -1 82 1 8 1468 673 232 20 34 chr6 115780630 115780777 -33736260 + RSINE1 SINE B4 4 148 -17 8 1468 661 269 115 6 chr6 115780813 115780996 -33736041 + B3 SINE B2 2 204 -12 8 1468 189 0 0 0 chr6 115781193 115781214 -33735823 + (GA)n Simple_repeat Simple_repeat 2 22 0 8 1468 207 156 0 0 chr6 115781560 115781592 -33735445 + CT-rich Low_complexity Low_complexity 2 33 0 8 1468 1619 154 111 141 chr6 115781688 115781740 -33735297 + MTD LTR MaLR 1 51 -368 8 1468 270 0 0 0 chr6 115781740 115781770 -33735267 + (GA)n Simple_repeat Simple_repeat 2 31 0 8 1468 1154 57 0 7 chr6 115781774 115781915 -33735122 + B1_Mm SINE Alu 2 141 -6 8 1468 1619 154 111 141 chr6 115781915 115782289 -33734748 + MTD LTR MaLR 52 419 0 8 1468 194 352 23 0 chr6 115782561 115782649 -33734388 + L2a LINE L2 3331 3420 -6 8 1468 244 273 165 6 chr6 115782663 115782781 -33734256 - MIR SINE MIR -97 165 46 8 1468 1187 150 48 10 chr6 115782789 115782997 -33734040 - B3 SINE B2 0 216 1 8 1468 1345 128 91 84 chr6 115783433 115783700 -33733337 + ORR1A3 LTR MaLR 1 271 -55 8 1468 959 67 97 0 chr6 115783700 115783834 -33733203 + B1_Mus1 SINE Alu 2 148 0 8 1468 371 73 18 0 chr6 115783840 115783895 -33733142 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 8 1468 504 72 14 0 chr6 115783896 115783965 -33733072 + ORR1A3 LTR MaLR 257 326 0 8 1468 10609 138 71 9 chr6 115783966 115785814 -33731223 + ORR1A3-int LTR MaLR 2 1963 0 8 1468 1650 120 110 57 chr6 115785814 115785870 -33731167 + ORR1A3 LTR MaLR 3 57 -269 8 1468 1331 49 35 70 chr6 115785870 115786069 -33730968 + B2_Mm1a SINE B2 2 193 0 8 1468 1650 120 110 57 chr6 115786069 115786312 -33730725 + ORR1A3 LTR MaLR 58 318 -8 8 1468 525 176 0 21 chr6 115786566 115786659 -33730378 + ORR1C2 LTR MaLR 1 91 -293 8 1468 300 154 0 0 chr6 115786663 115786715 -33730322 + GA-rich Low_complexity Low_complexity 2 53 0 8 1468 806 194 14 7 chr6 115786760 115786905 -33730132 - B1_Mus1 SINE Alu 0 148 3 8 1468 1190 153 94 9 chr6 115786906 115787130 -33729907 + ORR1C2 LTR MaLR 137 379 -5 8 1468 452 205 168 9 chr6 115788866 115788979 -33728058 + B1F1 SINE Alu 10 140 -9 8 1468 1212 56 0 0 chr6 115789138 115789282 -33727755 - B1_Mm SINE Alu -3 144 1 8 1468 348 221 0 13 chr6 115789386 115789464 -33727573 + PB1D9 SINE Alu 44 120 0 8 1468 24 0 0 0 chr6 115790718 115790742 -33726295 + AT_rich Low_complexity Low_complexity 1 24 0 8 1468 419 90 331 0 chr6 115790834 115790941 -33726096 + B2_Mm2 SINE B2 47 192 -3 8 1468 419 255 45 9 chr6 115791004 115791115 -33725922 - B1_Mus1 SINE Alu -1 147 33 8 1468 477 227 54 18 chr6 115791201 115791313 -33725724 - PB1D10 SINE Alu 0 117 2 8 1468 29 28 0 0 chr6 115791320 115791356 -33725681 + AT_rich Low_complexity Low_complexity 1 36 0 8 1468 1275 40 0 0 chr6 115791453 115791601 -33725436 + B1_Mus1 SINE Alu 1 148 0 8 1468 704 274 66 11 chr6 115791640 115791821 -33725216 - B3A SINE B2 0 198 8 8 1468 481 215 0 36 chr6 115791985 115792096 -33724941 - PB1D10 SINE Alu -3 114 8 8 1468 529 286 53 26 chr6 115793181 115793332 -33723705 - RSINE1 SINE B4 -8 157 3 8 1468 1476 68 21 0 chr6 115793365 115793555 -33723482 + B2_Mm2 SINE B2 2 195 0 8 1468 577 242 44 145 chr6 115793557 115793784 -33723253 - B4A SINE B4 -82 210 7 8 1468 366 213 27 0 chr6 115794843 115794918 -33722119 - ID4_ SINE ID -4 79 3 8 1468 507 261 102 0 chr6 115795694 115795851 -33721186 - MIR SINE MIR -58 204 32 8 1468 336 264 193 7 chr6 115795983 115796128 -33720909 + L1ME4a LINE L1 5881 6052 -72 8 1468 841 251 6 0 chr6 115796238 115796421 -33720616 + B3A SINE B2 5 188 -10 8 1468 999 113 42 0 chr6 115796557 115796699 -33720338 + B1_Mus1 SINE Alu 1 148 0 8 1468 615 305 0 0 chr6 115796766 115796907 -33720130 - ID_B1 SINE B4 -2 222 82 8 1468 303 291 13 102 chr6 115796773 115796930 -33720107 + YREP_Mm Unknown Unknown 186 328 -1484 8 1468 1586 47 0 10 chr6 115796937 115797132 -33719905 - B2_Mm1a SINE B2 0 193 1 8 1468 911 198 73 11 chr6 115797139 115797318 -33719719 - B3A SINE B2 -5 193 4 8 1468 902 233 24 9 chr6 115798551 115798763 -33718274 + ID_B1 SINE B4 3 217 -7 8 1468 347 39 39 0 chr6 115800052 115800104 -33716933 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 8 1468 1207 29 0 0 chr6 115800105 115800241 -33716796 - B1_Mus1 SINE Alu -12 136 1 8 1468 503 335 83 19 chr6 115800295 115800511 -33716526 - B4A SINE B4 -4 288 59 8 1468 901 190 0 0 chr6 115801043 115801185 -33715852 - B1_Mur4 SINE Alu -8 142 1 8 1468 881 153 14 141 chr6 115801545 115801758 -33715279 + B2_Mm2 SINE B2 1 186 -9 8 1468 693 212 37 15 chr6 115801911 115802091 -33714946 - B3A SINE B2 -11 184 5 8 1468 573 222 164 23 chr6 115802140 115802311 -33714726 + B3A SINE B2 1 195 -3 8 1468 237 287 59 69 chr6 115802517 115802618 -33714419 + MIRb SINE MIR 56 155 -113 8 1468 637 246 120 5 chr6 115802641 115802841 -33714196 - ID_B1 SINE B4 0 224 2 8 1468 186 100 0 32 chr6 115803124 115803155 -33713882 - MIR SINE MIR -139 123 94 8 1468 677 206 0 45 chr6 115804036 115804168 -33712869 - B1_Mur1 SINE Alu 0 149 24 8 1468 325 158 18 0 chr6 115804430 115804487 -33712550 + B1_Mus2 SINE Alu 90 147 0 8 1468 21 36 0 0 chr6 115804510 115804538 -33712499 + AT_rich Low_complexity Low_complexity 1 28 0 8 1468 977 126 62 52 chr6 115804538 115804730 -33712307 + B2_Mm2 SINE B2 2 195 0 8 1468 515 286 93 25 chr6 115805011 115805215 -33711822 - MIR SINE MIR -23 245 22 8 1468 607 248 72 0 chr6 115805390 115805515 -33711522 + RSINE1 SINE B4 17 150 -15 8 1468 380 241 46 0 chr6 115805554 115805641 -33711396 - PB1D10 SINE Alu -3 114 24 8 1468 880 138 27 27 chr6 115805687 115805836 -33711201 + B1_Mur2 SINE Alu 1 149 0 8 1468 881 242 32 42 chr6 115805889 115806194 -33710843 - MER102a DNA MER1_type -62 268 1 8 1468 279 308 74 37 chr6 115806402 115806537 -33710500 + Tigger15a DNA TcMar 220 359 -356 8 1468 201 175 0 24 chr6 115806838 115806879 -33710158 + CT-rich Low_complexity Low_complexity 4 43 0 8 1468 283 250 15 0 chr6 115806939 115807007 -33710030 - B4A SINE B4 -6 286 218 8 1468 948 214 33 0 chr6 115807016 115807198 -33709839 - B3 SINE B2 -4 212 25 8 1468 784 265 18 36 chr6 115807198 115807421 -33709616 - B4A SINE B4 -65 227 9 8 1468 369 189 66 26 chr6 115807615 115807691 -33709346 + ID4_ SINE ID 4 82 -1 8 1468 236 188 61 20 chr6 115807725 115807774 -33709263 + AluF_3 SINE Alu 162 212 -99 8 1468 251 360 11 33 chr6 115808395 115808487 -33708550 + B3A SINE B2 9 98 -100 8 1468 536 256 54 8 chr6 115808589 115808719 -33708318 + RSINE1 SINE B4 11 146 -19 8 1468 403 231 82 97 chr6 115808733 115808867 -33708170 + ID_B1 SINE B4 93 224 0 8 1468 391 295 131 0 chr6 115808876 115808998 -33708039 + B1F SINE Alu 2 139 -10 8 1468 774 233 163 19 chr6 115809688 115809946 -33707091 + L1MA7 LINE L1 5988 6282 -9 8 1468 343 314 195 37 chr6 115810115 115810330 -33706707 + MIR SINE MIR 6 254 -8 8 1468 278 320 0 0 chr6 115810757 115810832 -33706205 + (TATG)n Simple_repeat Simple_repeat 3 77 0 8 1468 686 135 39 0 chr6 115810837 115810941 -33706096 - B1_Mur1 SINE Alu -15 134 27 8 1468 328 97 388 10 chr6 115810939 115811042 -33705995 - B2_Mm2 SINE B2 -7 188 47 8 1468 1258 102 11 0 chr6 115811108 115811284 -33705753 - B2_Mm1t SINE B2 -14 179 2 8 1468 30 0 0 0 chr6 115811294 115811324 -33705713 + AT_rich Low_complexity Low_complexity 1 30 0 8 1468 307 254 16 0 chr6 115811325 115811388 -33705649 - MER2B DNA MER2_type -271 65 2 8 1468 1291 98 22 0 chr6 115811723 115811906 -33705131 - B2_Mm2 SINE B2 -1 194 8 8 1468 219 69 0 0 chr6 115812165 115812194 -33704843 + (CAAG)n Simple_repeat Simple_repeat 3 31 0 8 1468 217 360 125 51 chr6 115813161 115813497 -33703540 - L3b LINE CR1 -61 421 61 8 1468 621 234 0 28 chr6 115813837 115813978 -33703059 + ID_B1 SINE B4 86 222 -2 8 1468 251 309 0 14 chr6 115813989 115814058 -33702979 + ID4_ SINE ID 3 70 -13 8 1468 303 333 0 0 chr6 115814619 115814700 -33702337 - ID4 SINE ID -1 82 2 8 1468 516 325 82 0 chr6 115815291 115815522 -33701515 - L2 LINE L2 -722 2697 2448 8 1468 264 265 98 0 chr6 115815538 115815640 -33701397 - L2 LINE L2 -1685 1734 1623 8 1468 276 91 0 0 chr6 115815681 115815725 -33701312 + (T)n Simple_repeat Simple_repeat 1 44 0 8 1468 1258 20 0 7 chr6 115815726 115815873 -33701164 - B1_Mm SINE Alu -1 146 1 8 1468 610 319 110 9 chr6 115815878 115816195 -33700842 - L2 LINE L2 -1896 1523 1175 8 1468 336 203 0 86 chr6 115816331 115816412 -33700625 + ID4_ SINE ID 5 78 -5 8 1468 452 319 99 0 chr6 115816559 115816700 -33700337 + RSINE1 SINE B4 11 165 0 8 1468 582 321 6 18 chr6 115816773 115816938 -33700099 - RSINE1 SINE B4 0 165 3 8 1468 471 294 38 88 chr6 115817857 115818096 -33698941 - MIR SINE MIR -28 234 8 8 1468 184 237 85 0 chr6 115818257 115818316 -33698721 - MIR SINE MIR -59 149 86 8 1468 541 191 35 52 chr6 115818358 115818474 -33698563 + RSINE1 SINE B4 3 116 -49 8 1468 297 312 107 11 chr6 115818794 115818972 -33698065 + L2b LINE L2 2941 3135 -240 8 1468 1247 140 13 63 chr6 115818990 115819227 -33697810 - URR1B DNA MER1_type 0 225 1 8 1468 751 244 91 16 chr6 115819232 115819474 -33697563 + L1MA7 LINE L1 6006 6265 -26 8 1468 637 246 109 0 chr6 115819479 115819654 -33697383 + B4A SINE B4 1 194 -98 9 1468 952 230 54 0 chr6 115819799 115820003 -33697034 + B3 SINE B2 1 215 -1 9 1468 23 0 0 0 chr6 115820011 115820034 -33697003 + AT_rich Low_complexity Low_complexity 1 23 0 9 1468 336 203 0 86 chr6 115820481 115820562 -33696475 + ID4_ SINE ID 5 78 -5 9 1468 452 319 99 0 chr6 115820709 115820850 -33696187 + RSINE1 SINE B4 11 165 0 9 1468 582 321 6 18 chr6 115820923 115821088 -33695949 - RSINE1 SINE B4 0 165 3 9 1468 471 294 38 88 chr6 115822007 115822246 -33694791 - MIR SINE MIR -28 234 8 9 1468 184 237 85 0 chr6 115822407 115822466 -33694571 - MIR SINE MIR -59 149 86 9 1468 541 191 35 52 chr6 115822508 115822624 -33694413 + RSINE1 SINE B4 3 116 -49 9 1468 297 312 107 11 chr6 115822944 115823122 -33693915 + L2b LINE L2 2941 3135 -240 9 1468 1247 140 13 63 chr6 115823140 115823377 -33693660 - URR1B DNA MER1_type 0 225 1 9 1468 751 244 91 16 chr6 115823382 115823624 -33693413 + L1MA7 LINE L1 6006 6265 -26 9 1468 637 246 109 0 chr6 115823629 115823804 -33693233 + B4A SINE B4 1 194 -98 9 1468 952 230 54 0 chr6 115823949 115824153 -33692884 + B3 SINE B2 1 215 -1 9 1468 23 0 0 0 chr6 115824161 115824184 -33692853 + AT_rich Low_complexity Low_complexity 1 23 0 9 1468 246 308 37 37 chr6 115824455 115824536 -33692501 + ID4_ SINE ID 2 82 -1 9 1468 1289 84 0 6 chr6 115824574 115824742 -33692295 - B2_Mm2 SINE B2 -27 168 2 9 1468 818 276 71 0 chr6 115824763 115824959 -33692078 - ID_B1 SINE B4 -7 217 8 9 1468 261 119 0 0 chr6 115824959 115825001 -33692036 + (T)n Simple_repeat Simple_repeat 1 42 0 9 1468 1163 62 0 33 chr6 115825002 115825152 -33691885 - B1_Mus2 SINE Alu -2 145 1 9 1468 230 259 79 53 chr6 115825366 115825480 -33691557 - PB1D10 SINE Alu 0 117 1 9 1468 199 347 20 50 chr6 115825942 115826042 -33690995 + L2b LINE L2 3279 3375 -12 9 1468 612 219 70 80 chr6 115826092 115826305 -33690732 - L1MB2 LINE L1 -74 6097 5887 9 1468 2201 113 3 12 chr6 115826314 115826637 -33690400 - ORR1A4 LTR MaLR -8 321 2 9 1468 487 221 81 4 chr6 115826641 115826785 -33690252 - Lx5 LINE L1 -359 5815 5653 9 1468 27 0 0 0 chr6 115827213 115827240 -33689797 + AT_rich Low_complexity Low_complexity 1 27 0 9 1468 788 178 237 0 chr6 115827242 115827411 -33689626 - B3 SINE B2 -7 209 1 9 1468 1195 28 7 14 chr6 115827660 115827806 -33689231 + B1_Mus2 SINE Alu 1 145 -2 9 1468 807 199 28 0 chr6 115827906 115828047 -33688990 + B1_Mur4 SINE Alu 1 145 -5 9 1468 537 251 188 28 chr6 115828341 115828591 -33688446 + B4A SINE B4 2 291 -1 9 1468 264 30 0 0 chr6 115830187 115830220 -33686817 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 9 1468 366 258 246 32 chr6 115830348 115830632 -33686405 - L1MD2 LINE L1 -217 6142 5798 9 1468 452 0 59 0 chr6 115831854 115831922 -33685115 + (GA)n Simple_repeat Simple_repeat 1 72 0 9 1468 297 51 0 0 chr6 115834739 115834778 -33682259 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1468 1119 32 188 0 chr6 115834778 115834932 -33682105 - B2_Mm2 SINE B2 -12 183 1 9 1468 324 325 39 8 chr6 115834953 115835080 -33681957 - ORR1C2 LTR MaLR -248 136 6 9 1468 540 178 0 0 chr6 115835455 115835545 -33681492 - B3 SINE B2 -126 90 1 9 1468 218 255 0 0 chr6 115835642 115835689 -33681348 + GA-rich Low_complexity Low_complexity 5 51 0 9 1468 322 225 47 0 chr6 115835860 115835989 -33681048 + (CACCT)n Simple_repeat Simple_repeat 1 135 0 9 1468 333 233 114 27 chr6 115835998 115836178 -33680859 - L1MEb LINE L1 -5836 234 40 9 1468 788 195 156 5 chr6 115838415 115838601 -33678436 - B3 SINE B2 -2 214 1 9 1468 320 246 67 3 chr6 115839122 115839235 -33677802 - PB1D10 SINE Alu -17 132 13 9 1468 1163 107 6 0 chr6 115839298 115839476 -33677561 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 9 1468 579 144 0 0 chr6 115839488 115839585 -33677452 + (TTTC)n Simple_repeat Simple_repeat 3 99 0 9 1468 238 338 13 0 chr6 115839587 115839664 -33677373 - ID4 SINE ID 0 83 6 9 1468 535 252 23 8 chr6 115839683 115839815 -33677222 - B1F SINE Alu -6 143 10 9 1468 937 135 261 11 chr6 115839841 115840021 -33677016 - URR1A DNA MER1_type 0 226 2 9 1468 180 0 0 0 chr6 115840032 115840052 -33676985 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 9 1468 335 287 121 29 chr6 115841329 115841469 -33675568 + MIRb SINE MIR 27 179 -89 9 1468 452 18 0 17 chr6 115842910 115842968 -33674069 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 9 1468 439 256 233 19 chr6 115843000 115843159 -33673878 - ID_B1 SINE B4 0 224 32 9 1468 183 80 0 0 chr6 115843762 115843787 -33673250 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1468 2415 175 9 12 chr6 115844613 115845035 -33672002 - MTC LTR MaLR 0 421 1 9 1468 488 225 217 36 chr6 115845386 115845552 -33671485 - B3A SINE B2 -2 196 1 9 1468 312 303 132 14 chr6 115845652 115845796 -33671241 - RSINE1 SINE B4 -3 162 2 9 1468 372 291 9 43 chr6 115845879 115845994 -33671043 + PB1D10 SINE Alu 7 117 0 9 1468 273 304 58 10 chr6 115846130 115846233 -33670804 - L1MD1 LINE L1 -25 6217 6110 9 1468 693 207 27 7 chr6 115846407 115846553 -33670484 - B1_Mur2 SINE Alu 0 149 1 9 1468 388 293 26 0 chr6 115847737 115847853 -33669184 - PB1 SINE Alu -1 126 8 9 1468 450 0 0 0 chr6 115848521 115848571 -33668466 + (TC)n Simple_repeat Simple_repeat 1 50 0 9 1468 351 0 0 0 chr6 115848571 115848609 -33668428 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1468 276 250 24 36 chr6 115850515 115850598 -33666439 + ID4 SINE ID 2 83 0 9 1468 227 254 14 69 chr6 115851641 115851659 -33665378 + ID_B1 SINE B4 154 221 -3 9 1468 283 222 0 0 chr6 115851659 115851713 -33665324 + PB1 SINE Alu 72 125 -2 9 1468 961 158 7 0 chr6 115853127 115853273 -33663764 + B1_Mus1 SINE Alu 2 148 0 9 1468 1720 190 148 0 chr6 115854973 115855331 -33661706 - MTD LTR MaLR -8 411 1 9 1468 858 150 15 0 chr6 115856051 115856184 -33660853 + B1_Mur4 SINE Alu 3 137 -13 9 1468 196 30 61 0 chr6 115856184 115856217 -33660820 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 9 1468 1262 14 14 0 chr6 115856217 115856361 -33660676 - B1_Mm SINE Alu 0 147 2 9 1468 23 33 0 0 chr6 115856389 115856419 -33660618 + AT_rich Low_complexity Low_complexity 1 30 0 9 1468 877 196 0 0 chr6 115857517 115857652 -33659385 + B1_Mur3 SINE Alu 1 135 -14 9 1468 180 0 0 0 chr6 115857652 115857672 -33659365 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 9 1468 877 196 0 0 chr6 115857672 115857684 -33659353 + B1_Mur3 SINE Alu 136 147 -2 9 1468 192 152 0 0 chr6 115857770 115857803 -33659234 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1468 486 0 0 0 chr6 115858049 115858103 -33658934 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1468 509 136 11 0 chr6 115859538 115859626 -33657411 + PB1D9 SINE Alu 32 120 0 9 1468 214 338 122 20 chr6 115860665 115860813 -33656224 - MIRb SINE MIR -39 229 67 9 1468 267 31 0 0 chr6 115862755 115862787 -33654250 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 9 1468 243 396 60 0 chr6 115864239 115864388 -33652649 - MIRc SINE MIR -40 228 71 9 1468 191 244 44 0 chr6 115864757 115864802 -33652235 - MIRb SINE MIR -179 89 43 9 1468 207 0 0 0 chr6 115865604 115865627 -33651410 + (GAGTG)n Simple_repeat Simple_repeat 5 27 0 9 1468 28 0 0 0 chr6 115866358 115866386 -33650651 + AT_rich Low_complexity Low_complexity 1 28 0 9 1468 212 208 132 0 chr6 115867312 115867365 -33649672 + MIR3 SINE MIR 111 170 -38 9 1468 186 43 0 0 chr6 115867422 115867445 -33649592 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9 1468 942 161 0 39 chr6 115867445 115867591 -33649446 - B1_Mur4 SINE Alu -8 142 2 9 1469 1613 22 22 0 chr6 115867670 115867853 -33649184 - B2_Mm1a SINE B2 -6 187 1 9 1469 277 302 130 52 chr6 115867952 115868144 -33648893 - MIR SINE MIR -44 218 12 9 1469 192 241 114 0 chr6 115868174 115868253 -33648784 + MIRm SINE MIR 67 154 -122 9 1469 272 203 87 0 chr6 115868807 115868876 -33648161 - L2b LINE L2 -27 3348 3274 9 1469 1049 23 0 0 chr6 115869117 115869248 -33647789 + B1_Mus2 SINE Alu 15 145 -2 9 1469 31 0 0 0 chr6 115869252 115869283 -33647754 + AT_rich Low_complexity Low_complexity 1 31 0 9 1469 321 191 189 11 chr6 115869467 115869562 -33647475 + ID_B1 SINE B4 112 223 -1 9 1469 250 336 70 8 chr6 115873560 115873689 -33643348 + MIR SINE MIR 103 239 -23 9 1469 190 176 0 0 chr6 115877868 115877902 -33639135 - MIRc SINE MIR -121 147 114 9 1469 247 276 103 19 chr6 115879876 115879983 -33637054 + MIR SINE MIR 34 155 -113 9 1469 529 238 31 39 chr6 115882895 115883022 -33634015 - ID_B1 SINE B4 -11 213 88 9 1469 492 18 0 0 chr6 115883345 115883402 -33633635 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1469 204 97 0 0 chr6 115884358 115884389 -33632648 + (TC)n Simple_repeat Simple_repeat 1 31 0 9 1469 326 256 110 0 chr6 115885874 115885956 -33631081 + PB1D10 SINE Alu 1 91 -26 9 1469 564 316 21 10 chr6 115885928 115886120 -33630917 + ID_B1 SINE B4 28 221 -3 9 1469 403 297 49 42 chr6 115886245 115886389 -33630648 + MIRb SINE MIR 17 161 -107 9 1469 181 328 0 0 chr6 115887047 115887105 -33629932 + MIRm SINE MIR 216 273 -3 9 1469 263 28 28 0 chr6 115887334 115887370 -33629667 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 9 1469 212 86 0 28 chr6 115887386 115887422 -33629615 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1469 462 342 219 8 chr6 115888723 115889092 -33627945 - MLT1K LTR MaLR -10 585 139 1 1469 232 218 17 83 chr6 115889103 115889163 -33627874 - MLT1K LTR MaLR -401 194 139 1 1469 1797 202 44 7 chr6 115889866 115890294 -33626743 - RCHARR1 DNA MER1_type -16 958 515 1 1469 230 269 0 0 chr6 115890294 115890346 -33626691 + (TATG)n Simple_repeat Simple_repeat 2 53 0 1 1469 395 261 80 9 chr6 115890382 115890494 -33626543 - B4A SINE B4 -172 120 1 1 1469 1755 210 40 45 chr6 115890500 115890924 -33626113 - RCHARR1 DNA MER1_type -443 531 110 1 1469 677 243 29 0 chr6 115890980 115891120 -33625917 - RSINE1 SINE B4 -19 146 3 1 1469 261 368 23 100 chr6 115891121 115891251 -33625786 - RCHARR1 DNA MER1_type -853 121 2 1 1469 227 312 0 0 chr6 115891403 115891483 -33625554 + G-rich Low_complexity Low_complexity 1 80 0 1 1469 305 269 26 0 chr6 115891593 115891671 -33625366 + MLT1J LTR MaLR 233 312 -200 1 1469 439 329 102 61 chr6 115892688 115892983 -33624054 - MLT1H LTR MaLR 0 549 243 1 1469 251 305 0 68 chr6 115893192 115893280 -33623757 - ID4_ SINE ID 0 83 2 1 1469 366 226 86 0 chr6 115894073 115894166 -33622871 - PB1D10 SINE Alu -5 112 12 1 1469 822 177 160 0 chr6 115895376 115895557 -33621480 - B3 SINE B2 -4 212 3 1 1469 226 274 63 45 chr6 115895750 115895861 -33621176 - L1MB7 LINE L1 -68 6116 6004 1 1469 501 242 19 1 chr6 115896251 115896366 -33620671 + B1_Mur1 SINE Alu 16 131 -18 1 1469 311 244 32 43 chr6 115896789 115896883 -33620154 + BC1_Mm scRNA scRNA 8 100 -52 1 1469 311 292 46 19 chr6 115896967 115897075 -33619962 - PB1D7 SINE Alu -7 113 3 1 1469 1139 69 14 0 chr6 115897314 115897458 -33619579 + B1_Mus1 SINE Alu 3 148 0 1 1469 189 0 0 0 chr6 115898233 115898254 -33618783 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1469 199 319 32 65 chr6 115899025 115899149 -33617888 - L2c LINE L2 -180 3207 3088 1 1469 455 293 16 39 chr6 115899293 115899421 -33617616 + ID_B1 SINE B4 94 218 -6 1 1469 231 353 23 12 chr6 115899798 115899884 -33617153 - B4 SINE B4 -200 92 6 1 1469 210 268 0 99 chr6 115900276 115900367 -33616670 - L2c LINE L2 -551 2868 2787 1 1469 509 277 135 0 chr6 115900511 115900652 -33616385 - RSINE1 SINE B4 -3 162 3 1 1469 559 260 288 17 chr6 115900747 115901032 -33616005 - MTEa LTR MaLR 0 379 18 1 1469 740 274 27 58 chr6 115901226 115901451 -33615586 + B4A SINE B4 12 229 -63 1 1469 1482 169 162 15 chr6 115901573 115901939 -33615098 + MTD LTR MaLR 1 413 -6 1 1469 1155 70 0 0 chr6 115902017 115902154 -33614883 + B1_Mm SINE Alu 1 137 -10 1 1469 240 59 0 0 chr6 115902154 115902188 -33614849 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1469 278 194 14 69 chr6 115902277 115902349 -33614688 + B4A SINE B4 219 286 -6 1 1469 184 312 160 23 chr6 115904366 115904497 -33612540 + MIR SINE MIR 22 170 -106 1 1469 288 256 38 13 chr6 115904526 115904605 -33612432 + ID4_ SINE ID 1 81 -2 1 1469 22 70 0 0 chr6 115905068 115905111 -33611926 + AT_rich Low_complexity Low_complexity 1 43 0 1 1469 907 159 0 14 chr6 115906137 115906284 -33610753 - B1_Mus1 SINE Alu -2 146 2 1 1469 219 69 0 0 chr6 115906900 115906929 -33610108 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 1 1469 196 229 39 26 chr6 115908194 115908289 -33608748 + MIRc SINE MIR 68 167 -109 1 1469 194 299 43 29 chr6 115910245 115910314 -33606723 + L2b LINE L2 3087 3156 -219 1 1469 286 281 31 10 chr6 115911610 115911707 -33605330 - MIR SINE MIR -61 147 49 1 1469 335 228 16 16 chr6 115914570 115914695 -33602342 + (TA)n Simple_repeat Simple_repeat 2 126 0 1 1469 833 236 92 13 chr6 115914816 115915044 -33601993 + B4 SINE B4 38 283 -9 1 1469 1180 292 75 20 chr6 115915078 115915640 -33601397 - L1MB8 LINE L1 -78 6100 5508 1 1469 239 312 0 15 chr6 115919048 115919113 -33597924 + MLT1K LTR MaLR 206 269 -326 1 1469 301 239 50 12 chr6 115923353 115923436 -33593601 - PB1D10 SINE Alu -22 95 13 1 1469 247 302 181 0 chr6 115923535 115923651 -33593386 + MLT1K LTR MaLR 430 566 -29 1 1469 310 263 77 30 chr6 115924779 115924896 -33592141 - MIR SINE MIR -43 165 51 1 1469 200 365 89 45 chr6 115924882 115924994 -33592043 + MIRm SINE MIR 155 271 -5 1 1469 186 329 0 28 chr6 115926130 115926202 -33590835 + L3 LINE CR1 4323 4392 -97 1 1469 447 230 36 3 chr6 115926992 115927109 -33589928 + B1F1 SINE Alu 1 121 -26 1 1469 204 204 0 39 chr6 115928412 115928463 -33588574 - L2b LINE L2 -292 3083 3035 1 1469 299 366 80 6 chr6 115928913 115929075 -33587962 + MIRb SINE MIR 58 231 -37 1 1469 230 339 84 9 chr6 115929877 115930014 -33587023 - MIRb SINE MIR -83 185 31 1 1469 365 333 4 22 chr6 115931061 115931210 -33585827 + PB1 SINE Alu 6 284 -27 1 1469 26 0 0 0 chr6 115931372 115931398 -33585639 + GC_rich Low_complexity Low_complexity 1 26 0 1 1469 296 206 25 22 chr6 115931448 115931539 -33585498 + MIRm SINE MIR 56 151 -117 1 1469 613 258 138 7 chr6 115931697 115931909 -33585128 + B4 SINE B4 3 246 -46 1 1469 220 211 0 0 chr6 115931969 115932021 -33585016 + A-rich Low_complexity Low_complexity 1 52 0 1 1469 219 297 9 133 chr6 115932041 115932146 -33584891 + RSINE1 SINE B4 4 95 -70 1 1469 220 262 0 0 chr6 115932197 115932258 -33584779 + RSINE1 SINE B4 76 136 -29 1 1469 259 333 191 0 chr6 115932513 115932696 -33584341 - Tigger7 DNA MER2_type -23 2468 2251 1 1469 1149 306 70 0 chr6 115932718 115933090 -33583947 - Tigger7 DNA MER2_type -2075 416 19 1 1469 28 61 0 0 chr6 115933615 115933664 -33583373 + AT_rich Low_complexity Low_complexity 1 49 0 1 1469 521 295 74 53 chr6 115934224 115934507 -33582530 + B4 SINE B4 2 290 -2 1 1469 414 0 0 0 chr6 115934539 115934585 -33582452 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1469 184 195 24 24 chr6 115937627 115937669 -33579368 - MIR3 SINE MIR -19 189 148 1 1469 813 261 102 0 chr6 115938252 115938478 -33578559 + B4A SINE B4 26 274 -18 1 1469 382 287 0 21 chr6 115938985 115939081 -33577956 - PB1D10 SINE Alu 0 117 24 1 1469 289 217 0 55 chr6 115939381 115939454 -33577583 + MIR SINE MIR 71 139 -69 1 1469 235 243 42 14 chr6 115939937 115940008 -33577029 - MIR SINE MIR -130 132 60 1 1469 366 23 0 0 chr6 115940402 115940445 -33576592 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1469 370 319 9 9 chr6 115940896 115941010 -33576027 + ID_B1 SINE B4 9 122 -102 1 1469 969 162 133 30 chr6 115942705 115942908 -33574129 - URR1A DNA MER1_type -2 224 1 1 1469 24 0 0 0 chr6 115943760 115943784 -33573253 + GC_rich Low_complexity Low_complexity 1 24 0 1 1469 186 103 0 0 chr6 115944701 115944730 -33572307 + (CAG)n Simple_repeat Simple_repeat 2 30 0 1 1469 200 211 50 40 chr6 115944776 115944875 -33572162 + (CGCGG)n Simple_repeat Simple_repeat 5 104 0 1 1469 39 68 0 0 chr6 115944904 115944978 -33572059 + GC_rich Low_complexity Low_complexity 1 74 0 1 1469 220 333 0 23 chr6 115945372 115945458 -33571579 + CT-rich Low_complexity Low_complexity 1 84 0 1 1469 228 86 0 0 chr6 115945507 115945542 -33571495 + (C)n Simple_repeat Simple_repeat 1 35 0 1 1469 266 291 15 23 chr6 115946580 115946710 -33570327 + CT-rich Low_complexity Low_complexity 2 130 0 1 1469 189 200 44 0 chr6 115946914 115946959 -33570078 + MIRc SINE MIR 87 133 -135 1 1469 207 278 0 18 chr6 115947165 115947220 -33569817 - MIRc SINE MIR -98 170 117 1 1469 330 273 111 83 chr6 115947472 115947616 -33569421 + MER113 DNA MER1_type 136 283 -238 1 1469 200 184 0 20 chr6 115947909 115947959 -33569078 + G-rich Low_complexity Low_complexity 4 52 0 1 1469 189 271 70 14 chr6 115949690 115949761 -33567276 + MIRm SINE MIR 85 159 -117 1 1469 410 225 0 0 chr6 115949957 115950037 -33567000 + PB1D9 SINE Alu 40 119 -1 1 1469 380 266 44 9 chr6 115950047 115950161 -33566876 + PB1D7 SINE Alu 1 118 -2 1 1469 1386 66 44 0 chr6 115950261 115950443 -33566594 + B2_Mm2 SINE B2 2 191 -4 1 1469 423 0 0 0 chr6 115950477 115950524 -33566513 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1469 878 0 10 0 chr6 115950552 115950654 -33566383 + (TTTC)n Simple_repeat Simple_repeat 3 105 0 1 1469 908 176 0 0 chr6 115950654 115950790 -33566247 - B1_Mur4 SINE Alu -14 136 1 1 1469 203 292 50 109 chr6 115951362 115951472 -33565565 + L2b LINE L2 3082 3188 -199 1 1469 217 257 224 60 chr6 115952638 115952754 -33564283 - L2c LINE L2 -10 3416 3282 1 1469 965 146 11 0 chr6 115953178 115953356 -33563681 + CT-rich Low_complexity Low_complexity 1 180 0 1 1469 186 133 0 0 chr6 115953355 115953385 -33563652 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 1 1469 188 34 0 33 chr6 115953745 115953775 -33563262 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 1 1469 760 231 0 14 chr6 115955305 115955450 -33561587 + RSINE1 SINE B4 1 143 -22 1 1469 204 158 0 0 chr6 115956458 115956496 -33560541 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1469 226 200 0 0 chr6 115957273 115957313 -33559724 + C-rich Low_complexity Low_complexity 3 42 0 1 1469 326 220 78 85 chr6 115957439 115957568 -33559469 + MLT1B LTR MaLR 222 349 -41 1 1469 405 0 0 0 chr6 115957582 115957627 -33559410 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1469 221 225 112 0 chr6 115957791 115957871 -33559166 + L2a LINE L2 3075 3163 -263 1 1469 188 121 61 0 chr6 115957912 115957945 -33559092 + L2b LINE L2 3327 3361 -14 1 1469 275 261 100 43 chr6 115958298 115958438 -33558599 + B1_Mur2 SINE Alu 1 148 -1 1 1469 712 237 22 28 chr6 115958451 115958633 -33558404 + B3A SINE B2 2 182 -16 1 1469 243 61 0 0 chr6 115958742 115958775 -33558262 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1469 1563 32 21 0 chr6 115958786 115958972 -33558065 - B2_Mm1a SINE B2 -3 190 1 1 1469 507 242 57 24 chr6 115958977 115959100 -33557937 - B3 SINE B2 -6 210 84 1 1469 227 160 18 91 chr6 115959077 115959132 -33557905 - B2_Mm2 SINE B2 -120 75 25 1 1469 664 249 87 73 chr6 115959200 115959486 -33557551 + B4 SINE B4 3 292 0 1 1469 1672 26 0 0 chr6 115959845 115960037 -33557000 - B2_Mm1a SINE B2 -1 192 1 1 1469 261 0 0 0 chr6 115960153 115960182 -33556855 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 1 1469 351 0 0 0 chr6 115960323 115960362 -33556675 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1469 648 212 22 29 chr6 115960473 115960609 -33556428 - ID_B1 SINE B4 -8 216 82 1 1469 255 164 17 52 chr6 115961159 115961217 -33555820 + BC1_Mm scRNA scRNA 2 57 -95 1 1469 328 206 4 4 chr6 115961305 115961376 -33555661 + PB1D7 SINE Alu 17 87 -40 1 1469 254 264 14 14 chr6 115961425 115961498 -33555539 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1469 486 0 0 0 chr6 115961516 115961570 -33555467 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1469 515 260 43 75 chr6 115961684 115961871 -33555166 - B4A SINE B4 -38 254 74 1 1469 212 207 30 134 chr6 115962159 115962226 -33554811 - L2b LINE L2 -28 3347 3288 1 1469 423 276 9 28 chr6 115962680 115962788 -33554249 - PB1D10 SINE Alu 0 117 12 1 1469 311 208 7 21 chr6 115962805 115962950 -33554087 + CT-rich Low_complexity Low_complexity 1 142 0 1 1469 725 196 0 65 chr6 115962970 115963123 -33553914 + B1_Mus2 SINE Alu 5 147 0 1 1469 665 231 53 97 chr6 115963141 115963347 -33553690 + B3A SINE B2 1 197 -1 1 1469 407 256 133 41 chr6 115963347 115963533 -33553504 + B3A SINE B2 2 216 0 1 1469 415 256 118 15 chr6 115963562 115963697 -33553340 - B1_Mur3 SINE Alu 0 149 1 1 1469 465 246 8 26 chr6 115963717 115963834 -33553203 + ID_B1 SINE B4 79 193 -31 1 1469 226 182 36 0 chr6 115964408 115964463 -33552574 + ID4_ SINE ID 3 59 -24 1 1469 236 327 45 18 chr6 115964861 115964973 -33552064 + RMER12 LTR ERVK 742 856 -466 1 1469 281 311 21 62 chr6 115964949 115965045 -33551992 - RSINE1 SINE B4 0 165 74 1 1469 235 234 21 0 chr6 115965106 115965153 -33551884 + B1F2 SINE Alu 1 48 -101 1 1469 619 287 7 0 chr6 115965222 115965365 -33551672 - RSINE1 SINE B4 -4 161 18 1 1469 497 268 92 58 chr6 115965579 115965753 -33551284 + B3A SINE B2 9 188 -10 1 1469 828 244 57 39 chr6 115966041 115966271 -33550766 - B4 SINE B4 -9 283 50 1 1469 247 198 155 18 chr6 115966365 115966438 -33550599 - ID2 SINE ID -67 85 9 1 1469 261 281 180 40 chr6 115966452 115966552 -33550485 - PB1D10 SINE Alu -1 116 3 1 1469 614 79 11 0 chr6 115966870 115966959 -33550078 + (TCCC)n Simple_repeat Simple_repeat 3 92 0 1 1469 1185 69 7 0 chr6 115966976 115967121 -33549916 - B1_Mus2 SINE Alu 0 147 2 1 1469 456 234 44 53 chr6 115967148 115967261 -33549776 - PB1D9 SINE Alu -7 113 2 1 1469 455 97 267 26 chr6 115967570 115967686 -33549351 - B2_Mm2 SINE B2 -5 190 47 1 1469 1186 113 11 22 chr6 115967752 115967933 -33549104 - B2_Mm1t SINE B2 -14 179 1 1 1469 417 313 67 0 chr6 115967998 115968148 -33548889 + RSINE1 SINE B4 2 161 -4 1 1469 271 197 15 0 chr6 115968179 115968245 -33548792 + ID4 SINE ID 1 67 -16 1 1469 483 331 56 7 chr6 115968246 115968389 -33548648 - B4A SINE B4 -141 151 2 1 1469 22 35 0 0 chr6 115969472 115969501 -33547536 + AT_rich Low_complexity Low_complexity 1 29 0 1 1469 195 42 0 0 chr6 115971264 115971288 -33545749 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 1 1469 21 71 0 0 chr6 115971297 115971339 -33545698 + AT_rich Low_complexity Low_complexity 1 42 0 1 1469 314 288 41 90 chr6 115972670 115972702 -33544335 - PB1D9 SINE Alu -1 119 4 1 1469 479 222 22 0 chr6 115972702 115972792 -33544245 - ID_B1 SINE B4 -48 176 85 1 1469 438 20 0 0 chr6 115973089 115973140 -33543897 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1469 428 300 101 19 chr6 115973243 115973413 -33543624 - B4 SINE B4 -31 261 78 1 1469 392 216 165 10 chr6 115973563 115973666 -33543371 - B4A SINE B4 -172 120 2 1 1469 21 36 0 0 chr6 115973757 115973785 -33543252 + AT_rich Low_complexity Low_complexity 1 28 0 1 1469 252 343 69 53 chr6 115975427 115975615 -33541422 - L2b LINE L2 -7 3368 3178 1 1469 2209 102 16 6 chr6 115975719 115976034 -33541003 + ORR1A2 LTR MaLR 1 318 -9 1 1469 12492 115 39 15 chr6 115976039 115977955 -33539082 + ORR1A2-int LTR MaLR 1 1963 0 1 1469 1908 183 27 6 chr6 115977970 115978304 -33538733 + ORR1A2 LTR MaLR 47 387 -7 1 1469 1756 187 97 6 chr6 115978304 115978665 -33538372 - ORR1B1 LTR MaLR 0 394 1 1 1469 184 54 81 0 chr6 115978803 115978840 -33538197 + (TTTCC)n Simple_repeat Simple_repeat 2 41 0 1 1469 319 317 9 47 chr6 115978977 115978998 -33538039 - PB1D10 SINE Alu -15 102 1 1 1469 319 306 12 0 chr6 115978998 115979083 -33537954 - ID_B1 SINE B4 -57 167 82 1 1469 1184 61 0 13 chr6 115979108 115979257 -33537780 - B1_Mus1 SINE Alu 0 148 2 1 1469 512 178 158 0 chr6 115979587 115979688 -33537349 - PB1D9 SINE Alu -2 118 2 1 1469 287 312 32 21 chr6 115979690 115979785 -33537252 - B4A SINE B4 -196 96 1 1 1469 21 57 0 0 chr6 115979792 115979827 -33537210 + AT_rich Low_complexity Low_complexity 1 35 0 1 1469 1492 64 11 0 chr6 115979861 115980049 -33536988 + B2_Mm1t SINE B2 2 191 -2 1 1469 1369 95 15 35 chr6 115980457 115980654 -33536383 - B2_Mm2 SINE B2 -2 193 1 1 1469 751 214 14 0 chr6 115980895 115981035 -33536002 + B1_Mur2 SINE Alu 2 143 -6 1 1469 243 0 0 0 chr6 115981036 115981063 -33535974 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1469 1183 62 0 0 chr6 115981439 115981585 -33535452 + B1_Mus2 SINE Alu 2 147 0 1 1469 254 208 50 38 chr6 115982202 115982282 -33534755 - PB1D7 SINE Alu 0 120 40 1 1469 233 29 29 0 chr6 115982317 115982351 -33534686 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1469 375 294 86 22 chr6 115982997 115983136 -33533901 - RSINE1 SINE B4 -15 150 3 1 1469 449 255 118 35 chr6 115983448 115983651 -33533386 + ID_B1 SINE B4 5 224 0 1 1469 308 270 175 0 chr6 115983701 115983827 -33533210 - B1F SINE Alu 0 149 2 1 1469 465 255 83 60 chr6 115984017 115984154 -33532883 - ID_B1 SINE B4 -2 222 76 1 1469 297 128 0 0 chr6 115984154 115984201 -33532836 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1469 465 255 83 60 chr6 115984201 115984280 -33532757 - ID SINE ID -149 75 1 1 1469 630 171 48 60 chr6 115984296 115984449 -33532588 - B1F2 SINE Alu -1 148 2 1 1469 318 174 52 104 chr6 115984330 115984465 -33532572 - MT2B LTR ERVL -323 278 151 1 1469 459 113 205 13 chr6 115985048 115985160 -33531877 - B1_Mus2 SINE Alu 0 147 17 1 1469 315 309 12 0 chr6 115985755 115985839 -33531198 + PB1D10 SINE Alu 26 110 -7 1 1469 275 250 0 0 chr6 115986048 115986121 -33530916 - tRNA-Ala-GCA tRNA tRNA -2 73 1 1 1469 238 399 40 20 chr6 115986194 115986336 -33530701 - MIRc SINE MIR -70 198 48 1 1469 4400 117 43 14 chr6 115986699 115987427 -33529610 + RMER6A LTR ERVK 1 749 -7 1 1469 812 192 0 0 chr6 115988113 115988243 -33528794 + B3 SINE B2 1 130 -86 1 1469 222 62 0 0 chr6 115988860 115988892 -33528145 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1469 288 190 22 132 chr6 115988898 115988989 -33528048 + MT2B2 LTR ERVL 164 244 -340 1 1469 695 185 7 49 chr6 115988908 115989050 -33527987 + B1_Mus1 SINE Alu 12 147 -1 1 1469 269 241 75 56 chr6 115989071 115989194 -33527843 + MIRb SINE MIR 110 242 -26 1 1469 295 216 20 0 chr6 115989445 115989496 -33527541 + ID4_ SINE ID 2 53 -30 1 1469 281 236 65 33 chr6 115989746 115989838 -33527199 + Tigger15a DNA TcMar 580 674 -41 1 1469 25 0 0 0 chr6 115990354 115990379 -33526658 + AT_rich Low_complexity Low_complexity 1 25 0 1 1469 1411 99 5 0 chr6 115990791 115990983 -33526054 + B2_Mm1t SINE B2 1 193 0 1 1469 898 103 87 14 chr6 115991268 115991406 -33525631 + B1_Mur4 SINE Alu 2 149 -1 1 1469 225 0 0 0 chr6 115991444 115991469 -33525568 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1469 641 263 29 23 chr6 115991472 115991647 -33525390 - B3A SINE B2 0 198 23 1 1469 232 200 0 0 chr6 115991698 115991743 -33525294 - ID SINE ID -179 45 1 1 1469 1184 82 0 7 chr6 115994590 115994738 -33522299 - B1_Mus1 SINE Alu 0 148 2 1 1469 288 190 172 0 chr6 115995551 115995609 -33521428 - B3 SINE B2 -146 70 3 1 1469 314 167 393 0 chr6 115995755 115995839 -33521198 - MTD LTR MaLR -63 356 240 1 1469 1232 96 16 28 chr6 115995855 115996037 -33521000 - B2_Mm2 SINE B2 -14 181 2 1 1469 524 246 24 32 chr6 115996222 115996348 -33520689 + RSINE1 SINE B4 2 126 -39 1 1469 204 40 0 0 chr6 115996398 115996423 -33520614 + (G)n Simple_repeat Simple_repeat 1 25 0 1 1469 1219 34 0 20 chr6 115996434 115996584 -33520453 + B1_Mus1 SINE Alu 1 147 -1 1 1469 461 223 338 0 chr6 115996645 115996802 -33520235 + B3 SINE B2 3 212 -4 1 1469 305 280 13 51 chr6 115997374 115997453 -33519584 - PB1D10 SINE Alu -17 100 25 1 1469 1055 100 0 0 chr6 115997793 115997933 -33519104 + B1_Mus1 SINE Alu 2 141 -7 1 1469 660 26 0 0 chr6 115997936 115998014 -33519023 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 1470 269 299 0 0 chr6 115998924 115998991 -33518046 - PB1D9 SINE Alu -22 98 32 1 1470 506 80 0 26 chr6 115998997 115999074 -33517963 + ORR1A4 LTR MaLR 1 75 -254 1 1470 722 274 1 25 chr6 115999074 115999265 -33517772 - B3A SINE B2 -2 214 28 1 1470 226 288 37 83 chr6 115999229 115999318 -33517719 + YREP_Mm Unknown Unknown 94 296 -1513 1 1470 791 138 8 8 chr6 115999318 115999442 -33517595 - B1_Mus2 SINE Alu -3 144 21 1 1470 1235 35 7 0 chr6 115999461 115999606 -33517431 - B1_Mm SINE Alu -1 146 1 1 1470 261 75 0 0 chr6 115999629 115999669 -33517368 + (TCTCTG)n Simple_repeat Simple_repeat 1 40 0 1 1470 698 297 7 0 chr6 115999673 115999828 -33517209 - RSINE1 SINE B4 -8 157 2 1 1470 22 0 0 0 chr6 116000022 116000044 -33516993 + GC_rich Low_complexity Low_complexity 1 22 0 1 1470 314 248 31 49 chr6 116000493 116000618 -33516419 - B1F SINE Alu -2 147 1 2 1470 207 100 0 0 chr6 116001334 116001364 -33515673 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 3 1470 976 113 21 0 chr6 116001365 116001506 -33515531 - B1_Mus1 SINE Alu -2 146 3 4 1470 328 229 0 0 chr6 116001778 116001839 -33515198 - ID4 SINE ID -9 74 14 5 1470 1230 84 56 0 chr6 116002227 116002406 -33514631 + B2_Mm2 SINE B2 1 189 -6 6 1470 540 0 0 0 chr6 116002425 116002485 -33514552 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 1470 216 306 130 20 chr6 116002583 116002683 -33514354 - PB1D7 SINE Alu -3 117 7 8 1470 210 296 47 58 chr6 116002612 116002698 -33514339 - B4 SINE B4 -127 165 81 9 1470 298 164 137 0 chr6 116002738 116002811 -33514226 - B1F SINE Alu -14 135 53 1 1470 313 291 269 34 chr6 116002986 116003196 -33513841 + RMER15 LTR ERVL 317 575 0 1 1470 258 320 53 0 chr6 116003863 116003938 -33513099 + PB1D10 SINE Alu 3 81 -36 1 1470 189 352 159 0 chr6 116003972 116004060 -33512977 - L2c LINE L2 -224 3163 3062 1 1470 439 140 247 0 chr6 116004263 116004356 -33512681 - B1_Mus1 SINE Alu -32 116 1 1 1470 214 250 35 18 chr6 116004392 116004449 -33512588 + ID SINE ID 1 58 -166 1 1470 297 360 46 82 chr6 116004680 116004986 -33512051 - L2c LINE L2 -25 3362 3068 1 1470 204 192 0 37 chr6 116005495 116005549 -33511488 + CT-rich Low_complexity Low_complexity 4 55 0 1 1470 57 47 0 0 chr6 116005592 116005677 -33511360 + AT_rich Low_complexity Low_complexity 1 85 0 1 1470 240 163 0 0 chr6 116006234 116006277 -33510760 + A-rich Low_complexity Low_complexity 1 43 0 1 1470 447 19 0 0 chr6 116007022 116007074 -33509963 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1470 800 274 40 80 chr6 116007763 116008037 -33509000 - B4A SINE B4 -28 264 2 2 1470 222 171 0 0 chr6 116008125 116008166 -33508871 + CT-rich Low_complexity Low_complexity 2 42 0 2 1470 270 73 0 0 chr6 116008176 116008217 -33508820 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1470 882 152 14 7 chr6 116008219 116008365 -33508672 - B1_Mm SINE Alu 0 147 1 2 1470 216 0 0 0 chr6 116008906 116008930 -33508107 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1470 3526 71 34 45 chr6 116008972 116009291 -33507746 - Lx LINE L1 -333 6321 6012 2 1470 1685 21 0 0 chr6 116009291 116009483 -33507554 - B2_Mm1a SINE B2 0 193 2 2 1470 3526 71 34 45 chr6 116009483 116009692 -33507345 - Lx LINE L1 -643 6011 5799 2 1470 5431 138 31 0 chr6 116009691 116010607 -33506430 + Lx LINE L1 4844 5787 -96 2 1470 520 327 16 128 chr6 116010617 116010672 -33506365 + ID SINE ID 1 59 -165 2 1470 270 0 0 0 chr6 116010672 116010702 -33506335 + (CAA)n Simple_repeat Simple_repeat 3 32 0 2 1470 520 327 16 128 chr6 116010702 116010895 -33506142 + ID_B1 SINE B4 60 220 -4 2 1470 269 158 0 50 chr6 116011481 116011541 -33505496 + MT2_Mm LTR ERVL 437 493 0 3 1470 2954 43 54 3 chr6 116011956 116012329 -33504708 - L1Md_F2 LINE L1 0 6582 6191 3 1470 1110 90 7 0 chr6 116012409 116012554 -33504483 - B1_Mus2 SINE Alu -1 146 1 3 1470 554 186 112 67 chr6 116012855 116013034 -33504003 + RLTR23 LTR ERV1 244 430 0 3 1470 877 168 34 34 chr6 116013211 116013390 -33503647 - B2_Mm2 SINE B2 -15 180 2 3 1470 292 294 0 0 chr6 116013413 116013481 -33503556 + B1F SINE Alu 27 94 -55 3 1470 362 304 11 111 chr6 116013433 116013622 -33503415 + MT2B LTR ERVL 88 257 -344 3 1470 415 270 15 38 chr6 116013503 116013523 -33503514 + ID_B1 SINE B4 67 194 -30 3 1470 659 173 18 9 chr6 116013523 116013634 -33503403 + B1_Mur2 SINE Alu 5 116 -33 3 1470 734 191 30 0 chr6 116014062 116014193 -33502844 + B1_Mur2 SINE Alu 5 139 -10 3 1470 562 323 82 76 chr6 116014427 116014727 -33502310 - MLT1A LTR MaLR -17 357 52 4 1470 1585 27 5 11 chr6 116014727 116014916 -33502121 - B2_Mm1t SINE B2 -4 189 2 4 1470 562 323 82 76 chr6 116014916 116014970 -33502067 - MLT1A LTR MaLR -323 51 1 4 1470 198 0 0 0 chr6 116015589 116015611 -33501426 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1470 249 295 16 0 chr6 116015618 116015679 -33501358 + ID4_ SINE ID 2 63 -20 4 1470 1265 34 0 0 chr6 116015880 116016027 -33501010 + B1_Mus2 SINE Alu 1 147 0 4 1470 225 0 0 0 chr6 116016027 116016052 -33500985 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1470 375 282 143 88 chr6 116016060 116016332 -33500705 + B4A SINE B4 2 288 -4 4 1470 968 201 15 25 chr6 116016381 116016580 -33500457 + B3 SINE B2 1 197 -19 4 1470 397 285 57 21 chr6 116016749 116016889 -33500148 + MER31A LTR ERV1 35 179 -306 4 1470 305 278 50 30 chr6 116017694 116017794 -33499243 + RSINE1 SINE B4 1 102 -63 4 1470 480 77 0 0 chr6 116018924 116018989 -33498048 + (TCCA)n Simple_repeat Simple_repeat 3 67 0 5 1470 539 222 7 100 chr6 116019005 116019145 -33497892 - RSINE1 SINE B4 -36 129 3 5 1470 351 0 0 0 chr6 116019274 116019313 -33497724 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1470 421 247 78 11 chr6 116019340 116019430 -33497607 - RSINE1 SINE B4 -61 104 9 5 1470 1158 49 0 7 chr6 116019660 116019803 -33497234 + B1_Mus2 SINE Alu 1 142 -5 5 1470 1479 82 0 0 chr6 116020282 116020476 -33496561 - B2_Mm2 SINE B2 -1 194 1 5 1470 1011 249 29 43 chr6 116020504 116020781 -33496256 + B4 SINE B4 1 273 -19 5 1470 286 266 31 0 chr6 116021465 116021529 -33495508 - ID4_ SINE ID -9 74 9 5 1470 614 288 50 85 chr6 116021744 116021945 -33495092 - B3A SINE B2 0 195 2 5 1470 474 18 0 0 chr6 116023594 116023649 -33493388 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1470 773 255 38 5 chr6 116023746 116023959 -33493078 + ID_B1 SINE B4 3 222 -2 6 1470 414 0 0 0 chr6 116024106 116024152 -33492885 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1470 808 238 116 24 chr6 116024166 116024416 -33492621 - B4A SINE B4 -18 274 2 6 1470 743 240 7 0 chr6 116024435 116024581 -33492456 - B1_Mur2 SINE Alu -2 147 1 6 1470 760 331 116 26 chr6 116025132 116025789 -33491248 - L1MD2 LINE L1 -5578 969 254 6 1470 531 45 0 0 chr6 116025912 116025978 -33491059 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1470 684 149 0 9 chr6 116026006 116026114 -33490923 - PB1D9 SINE Alu -13 107 1 6 1470 441 250 70 170 chr6 116026363 116026604 -33490433 + ID_B1 SINE B4 2 218 -6 6 1470 636 219 7 68 chr6 116026462 116026609 -33490428 + B1_Mur2 SINE Alu 12 149 0 6 1470 298 254 0 0 chr6 116026917 116026980 -33490057 - RSINE1 SINE B4 -24 141 79 6 1470 200 279 0 0 chr6 116027059 116027127 -33489910 + A-rich Low_complexity Low_complexity 1 68 0 7 1470 513 0 0 0 chr6 116027200 116027257 -33489780 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1470 586 191 69 9 chr6 116027260 116027376 -33489661 - B1_Mm SINE Alu -23 124 2 7 1470 331 299 90 112 chr6 116027920 116028108 -33488929 - MTEa LTR MaLR -164 215 32 7 1470 320 229 0 0 chr6 116028349 116028410 -33488627 + ID4_ SINE ID 20 80 -3 7 1470 560 237 372 31 chr6 116028552 116028748 -33488289 + MLT1A LTR MaLR 117 379 -29 7 1470 255 241 0 94 chr6 116028863 116028927 -33488110 + B4A SINE B4 80 137 -155 7 1470 377 200 259 0 chr6 116028883 116028968 -33488069 + PB1D10 SINE Alu 9 115 -2 7 1470 214 359 105 32 chr6 116029388 116029483 -33487554 + PB1D7 SINE Alu 7 108 -12 7 1470 1101 85 0 0 chr6 116029489 116029630 -33487407 - B1_Mus1 SINE Alu -5 143 3 7 1470 435 101 87 0 chr6 116029736 116029805 -33487232 + BC1_Mm scRNA scRNA 1 75 -77 8 1470 468 51 0 0 chr6 116030656 116030715 -33486322 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 1470 357 271 0 14 chr6 116031319 116031390 -33485647 + ID4 SINE ID 9 78 -5 8 1470 324 291 11 55 chr6 116031390 116031410 -33485627 + ID_B1 SINE B4 9 95 -129 8 1470 215 158 45 68 chr6 116031752 116031840 -33485197 + A-rich Low_complexity Low_complexity 3 88 0 8 1470 334 297 40 81 chr6 116032791 116032890 -33484147 - MER2B DNA MER2_type -1 335 241 8 1470 399 235 0 24 chr6 116033042 116033125 -33483912 - PB1D10 SINE Alu -32 85 5 8 1470 252 329 0 34 chr6 116033068 116033156 -33483881 - B4 SINE B4 -148 144 60 8 1470 605 196 113 0 chr6 116033513 116033646 -33483391 - B1_Mur1 SINE Alu 0 149 2 8 1470 429 70 0 0 chr6 116033803 116033860 -33483177 + (TAA)n Simple_repeat Simple_repeat 3 59 0 8 1470 21 0 0 0 chr6 116034357 116034378 -33482659 + AT_rich Low_complexity Low_complexity 1 21 0 9 1470 501 301 60 0 chr6 116034395 116034528 -33482509 + ID_B1 SINE B4 84 224 0 9 1470 785 234 65 0 chr6 116036030 116036184 -33480853 - RSINE1 SINE B4 0 165 2 9 1470 209 367 40 10 chr6 116036771 116036870 -33480167 + L4 LINE RTE 1790 1891 -138 9 1470 272 188 0 14 chr6 116038297 116038367 -33478670 + CT-rich Low_complexity Low_complexity 3 71 0 9 1470 997 142 0 0 chr6 116038367 116038515 -33478522 - B1_Mus1 SINE Alu 0 148 1 9 1470 488 308 90 32 chr6 116038516 116038991 -33478046 - L1MEf LINE L1 -3702 3143 2646 9 1470 340 311 87 19 chr6 116039047 116039413 -33477624 - L1MEf LINE L1 -4244 2605 2027 9 1470 337 219 19 111 chr6 116039420 116039528 -33477509 + PB1D10 SINE Alu 5 102 -15 9 1470 766 162 14 7 chr6 116039528 116039671 -33477366 + URR1A DNA MER1_type 82 225 -1 9 1470 648 271 22 79 chr6 116039996 116040224 -33476813 + B3 SINE B2 2 216 0 9 1470 1151 106 0 45 chr6 116040521 116040699 -33476338 + B2_Mm2 SINE B2 3 172 -23 1 1470 1395 62 22 0 chr6 116040699 116040878 -33476159 - B2_Mm1t SINE B2 -10 183 1 1 1470 218 125 75 0 chr6 116040878 116040918 -33476119 - B3 SINE B2 -171 45 3 1 1470 2805 85 14 16 chr6 116040919 116041363 -33475674 + L1_Mur2 LINE L1 2617 3059 -2818 1 1470 335 260 31 0 chr6 116041363 116041459 -33475578 + GA-rich Low_complexity Low_complexity 2 100 0 1 1470 3300 101 16 13 chr6 116041460 116042077 -33474960 + L1_Mur2 LINE L1 3064 3648 -2238 1 1470 405 258 93 0 chr6 116042130 116042227 -33474810 - RSINE1 SINE B4 -45 120 15 1 1470 467 285 77 11 chr6 116042277 116042458 -33474579 - B3A SINE B2 -4 194 2 1 1470 870 156 119 0 chr6 116043236 116043396 -33473641 + B2_Mm1t SINE B2 1 179 -14 1 1470 273 39 91 55 chr6 116043474 116043529 -33473508 + B2_Mm2 SINE B2 130 186 -9 1 1470 308 272 37 0 chr6 116043606 116043687 -33473350 + BC1_Mm scRNA scRNA 2 85 -67 1 1470 461 256 8 8 chr6 116043909 116044027 -33473010 - PB1D7 SINE Alu -1 119 2 1 1470 2152 131 108 32 chr6 116044114 116044493 -33472544 + MTC LTR MaLR 14 421 0 1 1470 289 283 8 50 chr6 116044810 116044929 -33472108 + PB1D10 SINE Alu 4 117 0 1 1470 570 65 52 41 chr6 116044934 116045031 -33472006 + B2_Mm2 SINE B2 97 194 -1 1 1470 352 295 45 39 chr6 116045204 116045359 -33471678 + L1MC LINE L1 5315 5470 -2412 1 1470 728 224 70 65 chr6 116045526 116045712 -33471325 + B3A SINE B2 11 197 -1 1 1470 1099 67 0 0 chr6 116045725 116045859 -33471178 + B1_Mus1 SINE Alu 3 136 -12 1 1470 339 25 0 0 chr6 116045859 116045899 -33471138 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 1 1470 510 262 16 24 chr6 116045913 116046038 -33470999 + B1_Mur1 SINE Alu 26 149 0 1 1470 348 248 231 0 chr6 116046947 116047068 -33469969 - B1F2 SINE Alu 0 149 1 1 1470 285 189 67 13 chr6 116047108 116047183 -33469854 + RMER1C Other Other 1264 1342 0 1 1470 273 98 0 0 chr6 116047193 116047234 -33469803 + (CAT)n Simple_repeat Simple_repeat 3 43 0 1 1470 220 333 190 25 chr6 116047476 116047713 -33469324 - L2 LINE L2 -420 2999 2724 1 1470 220 311 65 37 chr6 116048402 116048499 -33468538 + L2 LINE L2 2758 2859 -560 1 1470 312 27 0 0 chr6 116048499 116048536 -33468501 + (TATG)n Simple_repeat Simple_repeat 3 39 0 1 1470 183 309 36 0 chr6 116049001 116049056 -33467981 - L2 LINE L2 -1042 2377 2321 1 1470 207 273 0 0 chr6 116049176 116049220 -33467817 + polypurine Low_complexity Low_complexity 2 45 0 1 1470 427 93 9 85 chr6 116049660 116049766 -33467271 - Lx LINE L1 -1 6653 6556 1 1470 3682 122 41 38 chr6 116049767 116050432 -33466605 - Lx LINE L1 -32 6622 5956 1 1470 590 124 32 30 chr6 116050466 116050591 -33466446 - B1_Mus2 SINE Alu -2 147 29 1 1470 2272 41 0 0 chr6 116050591 116050882 -33466155 - L1_Mus4 LINE L1 -701 5935 5645 1 1470 1243 211 106 34 chr6 116051046 116051395 -33465642 - ORR1D1 LTR MaLR 0 374 1 1 1470 499 286 39 7 chr6 116052283 116052438 -33464599 + RSINE1 SINE B4 1 160 -5 1 1470 644 246 7 55 chr6 116053352 116053498 -33463539 + RSINE1 SINE B4 2 140 -25 1 1470 758 210 28 0 chr6 116053524 116053667 -33463370 - B1_Mur4 SINE Alu -2 148 2 1 1470 556 364 16 5 chr6 116053841 116054026 -33463011 - B4A SINE B4 -104 188 2 1 1470 309 309 44 26 chr6 116055209 116055322 -33461715 - ID_B1 SINE B4 0 224 110 1 1470 519 250 0 9 chr6 116055225 116055330 -33461707 - B1_Mur1 SINE Alu -24 125 22 1 1470 234 0 0 0 chr6 116056909 116056935 -33460102 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1470 1287 150 26 31 chr6 116058862 116059089 -33457948 + URR1A DNA MER1_type 1 226 0 1 1470 358 267 19 38 chr6 116059184 116059289 -33457748 + PB1D10 SINE Alu 1 103 -14 1 1470 297 0 0 0 chr6 116059326 116059359 -33457678 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1470 411 21 0 0 chr6 116059359 116059406 -33457631 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1470 254 87 22 0 chr6 116059919 116059965 -33457072 + (TTTTTG)n Simple_repeat Simple_repeat 1 47 0 1 1470 306 0 0 0 chr6 116060043 116060077 -33456960 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1470 369 274 21 10 chr6 116060654 116060750 -33456287 + B1_Mur4 SINE Alu 14 110 -40 1 1470 409 217 224 9 chr6 116061237 116061344 -33455693 + ID_B1 SINE B4 94 223 -1 1 1470 224 30 0 29 chr6 116061801 116061835 -33455202 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 1470 967 38 44 15 chr6 116061945 116062080 -33454957 - B1_Mus1 SINE Alu 0 148 10 1 1470 583 210 52 77 chr6 116061947 116062102 -33454935 - B4 SINE B4 -69 223 73 1 1470 28 0 0 26 chr6 116062139 116062154 -33454883 + AT_rich Low_complexity Low_complexity 1 15 0 1 1470 939 101 139 0 chr6 116062154 116062312 -33454725 - Lx3_Mus LINE L1 0 7009 6830 1 1470 28 0 0 26 chr6 116062312 116062335 -33454702 + AT_rich Low_complexity Low_complexity 1 23 0 1 1470 226 292 0 0 chr6 116062630 116062695 -33454342 - PB1D10 SINE Alu -18 99 35 1 1470 411 239 141 31 chr6 116062738 116062993 -33454044 + L1MA8 LINE L1 6003 6285 -6 1 1470 507 221 63 0 chr6 116063453 116063548 -33453489 + B3 SINE B2 2 102 -114 1 1470 643 313 20 7 chr6 116063808 116063956 -33453081 + RSINE1 SINE B4 2 152 -13 1 1470 399 73 0 0 chr6 116063984 116064039 -33452998 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1470 654 209 0 0 chr6 116064169 116064284 -33452753 + B1F SINE Alu 29 143 -6 1 1470 801 162 29 7 chr6 116064649 116064786 -33452251 - B1_Mur3 SINE Alu -8 141 2 1 1470 672 255 58 40 chr6 116064925 116065150 -33451887 + MER2 DNA MER2_type 117 345 0 1 1470 302 273 105 28 chr6 116065177 116065246 -33451791 - L1MEf LINE L1 -4140 2060 1989 1 1470 277 300 19 48 chr6 116065246 116065351 -33451686 - PB1D10 SINE Alu -14 103 2 1 1470 302 273 105 28 chr6 116065351 116065462 -33451575 - L1MEf LINE L1 -4212 1988 1867 1 1470 594 218 48 21 chr6 116065505 116065650 -33451387 + B1F2 SINE Alu 1 149 0 1 1470 243 0 0 0 chr6 116065705 116065732 -33451305 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1470 1533 32 21 16 chr6 116066140 116066332 -33450705 + B2_Mm1a SINE B2 1 193 0 1 1470 251 261 43 0 chr6 116066452 116066521 -33450516 - MADE2 DNA Mariner -2 78 7 1 1470 318 148 0 0 chr6 116066658 116066712 -33450325 + B3 SINE B2 2 55 -161 1 1470 800 109 8 0 chr6 116066786 116066905 -33450132 + B2_Mm1t SINE B2 61 180 -13 1 1470 392 88 450 0 chr6 116066955 116067035 -33450002 + B2_Mm2 SINE B2 47 162 -33 1 1470 216 0 0 0 chr6 116067035 116067059 -33449978 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1470 683 203 7 59 chr6 116067263 116067415 -33449622 + B1_Mur2 SINE Alu 6 149 0 1 1470 350 129 16 0 chr6 116067416 116067478 -33449559 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 1 1470 1431 51 0 6 chr6 116068261 116068438 -33448599 - B2_Mm2 SINE B2 -18 177 2 1 1470 828 170 14 0 chr6 116068450 116068591 -33448446 - B1_Mur3 SINE Alu -5 144 2 1 1470 438 205 174 33 chr6 116068703 116068824 -33448213 + B1_Mur3 SINE Alu 1 138 -11 1 1470 309 274 225 16 chr6 116068909 116069091 -33447946 + HAL1 LINE L1 821 1040 -1467 1 1470 795 102 9 0 chr6 116069099 116069207 -33447830 + B1_Mus1 SINE Alu 5 113 -35 1 1470 457 301 90 93 chr6 116070212 116070567 -33446470 + ORR1E LTR MaLR 2 355 -4 1 1470 438 315 18 0 chr6 116070620 116070731 -33446306 + RSINE1 SINE B4 5 117 -48 1 1470 2127 118 13 10 chr6 116070951 116071260 -33445777 + ORR1A2 LTR MaLR 3 312 -15 1 1470 1157 99 12 0 chr6 116071250 116071421 -33445616 + B2_Mm1t SINE B2 19 191 -2 1 1470 12902 129 24 23 chr6 116071437 116072631 -33444406 + MERVL_2A-int LTR ERVL 3533 4709 -1052 1 1470 1158 68 0 0 chr6 116072631 116072778 -33444259 + B1_Mus1 SINE Alu 2 148 0 1 1470 12902 129 24 23 chr6 116072778 116073678 -33443359 + MERVL_2A-int LTR ERVL 4710 5629 -132 1 1470 324 139 25 89 chr6 116073678 116073757 -33443280 + ORR1A2-int LTR MaLR 567 640 -1323 1 1470 261 79 0 0 chr6 116073757 116073795 -33443242 + MERVL-int LTR ERVL 5448 5485 0 1 1470 3407 87 145 14 chr6 116073795 116074311 -33442726 + MT2B2 LTR ERVL 1 584 0 1 1470 1253 206 36 20 chr6 116074311 116074564 -33442473 - MTD LTR MaLR -162 257 1 1 1470 1224 41 7 0 chr6 116074785 116074932 -33442105 + B1_Mus1 SINE Alu 1 148 0 1 1470 689 287 0 23 chr6 116075491 116075662 -33441375 - B3 SINE B2 -3 213 47 1 1470 875 214 78 86 chr6 116075662 116076010 -33441027 + RMER17C LTR ERVK 1 345 -65 1 1470 271 234 16 0 chr6 116076031 116076095 -33440942 - B3A SINE B2 -133 65 1 1 1470 1160 54 0 26 chr6 116077144 116077295 -33439742 - B1_Mm SINE Alu 0 147 1 1 1470 306 296 17 42 chr6 116077338 116077458 -33439579 - PB1D10 SINE Alu 0 117 1 1 1470 1430 75 11 0 chr6 116077523 116077710 -33439327 + B2_Mm1t SINE B2 1 189 -4 1 1470 331 257 50 0 chr6 116077804 116077905 -33439132 - L1_Mur3 LINE L1 -2518 3362 3257 1 1470 863 226 54 0 chr6 116077983 116078187 -33438850 - B3 SINE B2 0 216 2 1 1470 496 315 18 24 chr6 116078222 116078388 -33438649 - B4 SINE B4 -127 165 1 1 1470 2072 137 24 54 chr6 116079011 116079421 -33437616 + RMER10B LTR ERVL 1 398 0 1 1470 252 147 26 13 chr6 116079484 116079560 -33437477 + (TATAA)n Simple_repeat Simple_repeat 1 77 0 1 1470 412 164 241 61 chr6 116080114 116080342 -33436695 - Lx9 LINE L1 -6 7638 7370 1 1470 835 205 211 102 chr6 116080342 116080434 -33436603 + Lx9 LINE L1 6918 7002 -642 1 1470 1205 48 0 0 chr6 116080434 116080581 -33436456 - B1_Mus2 SINE Alu 0 147 1 1 1470 835 205 211 102 chr6 116080581 116080901 -33436136 + Lx9 LINE L1 7003 7375 -269 1 1470 23 54 0 0 chr6 116081020 116081057 -33435980 + AT_rich Low_complexity Low_complexity 1 37 0 1 1470 351 197 0 106 chr6 116081385 116081470 -33435567 + B4A SINE B4 2 77 -215 2 1470 303 326 31 94 chr6 116081470 116081544 -33435493 + B3A SINE B2 2 150 -48 2 1470 33 0 0 0 chr6 116081690 116081723 -33435314 + AT_rich Low_complexity Low_complexity 1 33 0 2 1470 689 161 81 0 chr6 116081788 116081912 -33435125 + B1_Mur1 SINE Alu 2 135 -14 2 1470 234 0 0 0 chr6 116081914 116081940 -33435097 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1470 268 302 88 63 chr6 116081943 116082148 -33434889 + MIR SINE MIR 41 250 -12 2 1470 309 176 87 14 chr6 116082833 116082902 -33434135 + ID4_ SINE ID 2 75 -8 2 1470 946 125 7 0 chr6 116082957 116083093 -33433944 + B1_Mus2 SINE Alu 10 146 -1 2 1470 207 0 0 0 chr6 116083122 116083145 -33433892 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1470 416 304 0 0 chr6 116083154 116083246 -33433791 + ID_B1 SINE B4 112 203 -21 2 1470 455 316 0 0 chr6 116083265 116083379 -33433658 + RSINE1 SINE B4 48 161 -4 2 1470 369 308 104 15 chr6 116083525 116083660 -33433377 - ID_B1 SINE B4 0 224 78 2 1470 240 163 0 0 chr6 116084483 116084526 -33432511 + A-rich Low_complexity Low_complexity 1 43 0 2 1470 1325 65 21 41 chr6 116085144 116085338 -33431699 + B2_Mm2 SINE B2 2 191 -4 2 1470 305 109 16 0 chr6 116085457 116085521 -33431516 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1470 488 268 39 31 chr6 116085522 116085649 -33431388 + B1F1 SINE Alu 22 149 0 2 1470 377 298 76 42 chr6 116088512 116088631 -33428406 + B1_Mus2 SINE Alu 1 123 -24 2 1470 343 290 144 8 chr6 116088827 116088952 -33428085 + B1F SINE Alu 1 142 -7 2 1470 923 121 42 47 chr6 116089278 116089469 -33427568 + B2_Mm2 SINE B2 1 190 -5 2 1470 463 239 0 43 chr6 116089500 116089592 -33427445 + B4 SINE B4 81 168 -124 2 1470 374 287 0 57 chr6 116089505 116089627 -33427410 + PB1D7 SINE Alu 1 115 -5 2 1470 315 0 0 0 chr6 116089723 116089758 -33427279 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1470 210 128 0 0 chr6 116089768 116089807 -33427230 + (AGGGGG)n Simple_repeat Simple_repeat 4 42 0 2 1470 305 121 16 49 chr6 116089807 116089868 -33427169 + B1_Mus2 SINE Alu 89 147 0 2 1470 352 256 134 20 chr6 116091215 116091462 -33425575 + L1MCa LINE L1 791 1065 -5443 2 1470 287 107 17 67 chr6 116091480 116091540 -33425497 - B1_Mus2 SINE Alu 0 147 91 2 1470 1620 273 73 55 chr6 116092134 116092823 -33424214 - Lx8 LINE L1 -367 7106 6406 2 1470 873 222 50 108 chr6 116093098 116093550 -33423487 + RMER15 LTR ERVL 4 518 -57 2 1470 317 311 38 19 chr6 116093556 116093661 -33423376 + ID_B1 SINE B4 64 170 -54 2 1470 409 314 28 35 chr6 116094152 116094297 -33422740 + RSINE1 SINE B4 3 146 -19 2 1470 318 249 183 72 chr6 116094604 116094855 -33422182 + B4 SINE B4 1 279 -13 2 1470 305 47 0 23 chr6 116094903 116094947 -33422090 + (TCTCCC)n Simple_repeat Simple_repeat 2 44 0 2 1470 771 268 121 51 chr6 116095085 116095522 -33421515 - L1ME1 LINE L1 -103 6076 5600 2 1470 1181 71 18 161 chr6 116095522 116095739 -33421298 - B2_Mm2 SINE B2 -7 188 3 2 1470 771 268 121 51 chr6 116095739 116095847 -33421190 - L1ME1 LINE L1 -580 5599 5493 2 1470 262 301 21 89 chr6 116095935 116096125 -33420912 - L1ME1 LINE L1 -1071 5075 4899 2 1470 251 377 74 49 chr6 116096147 116096537 -33420500 + L2 LINE L2 1085 1484 -1935 2 1470 227 333 0 82 chr6 116096586 116096720 -33420317 + MIRb SINE MIR 145 267 -1 2 1470 279 114 0 0 chr6 116096850 116096894 -33420143 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1470 228 423 77 0 chr6 116097887 116098017 -33419020 + MER2 DNA MER2_type 1 140 -205 2 1470 315 313 91 84 chr6 116098427 116098570 -33418467 + RSINE1 SINE B4 3 146 -19 2 1470 526 226 124 69 chr6 116098655 116098775 -33418262 + L1MB3 LINE L1 5521 5646 -537 2 1470 726 181 35 21 chr6 116098775 116098916 -33418121 + B1_Mur3 SINE Alu 1 143 -6 2 1470 526 226 124 69 chr6 116098916 116099085 -33417952 + L1MB3 LINE L1 5647 5826 -357 2 1470 638 281 0 36 chr6 116099088 116099254 -33417783 + RSINE1 SINE B4 2 161 -4 2 1470 458 292 13 35 chr6 116099294 116099534 -33417503 + L1MB3 LINE L1 5859 6090 -93 2 1470 7835 50 9 0 chr6 116099638 116100969 -33416068 + L1_Mus1 LINE L1 5234 6654 0 2 1470 959 228 84 60 chr6 116100998 116101283 -33415754 + B4A SINE B4 1 292 0 2 1470 680 277 7 0 chr6 116101331 116101479 -33415558 + B3A SINE B2 2 150 -48 2 1470 1722 167 139 21 chr6 116101585 116101749 -33415288 + MTC LTR MaLR 5 209 -212 2 1470 935 151 0 0 chr6 116101749 116101888 -33415149 + B1_Mur3 SINE Alu 1 139 -10 2 1470 351 0 0 0 chr6 116101888 116101927 -33415110 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1470 252 0 0 0 chr6 116101927 116101955 -33415082 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 2 1470 1722 167 139 21 chr6 116101955 116102161 -33414876 + MTC LTR MaLR 210 419 -2 2 1470 383 240 58 39 chr6 116102276 116102380 -33414657 + PB1D10 SINE Alu 11 116 -1 2 1470 812 213 84 25 chr6 116103169 116103371 -33413666 + B3 SINE B2 1 214 -2 2 1470 212 288 122 41 chr6 116104270 116104393 -33412644 - RSINE1 SINE B4 -4 161 29 2 1470 312 262 0 0 chr6 116104306 116104397 -33412640 - B3A SINE B2 -81 114 24 2 1470 23 54 0 0 chr6 116104510 116104547 -33412490 + AT_rich Low_complexity Low_complexity 1 37 0 2 1470 1059 70 0 77 chr6 116104676 116104831 -33412206 + B1_Mus1 SINE Alu 1 143 -5 2 1470 330 138 0 0 chr6 116104831 116104889 -33412148 + (GAAA)n Simple_repeat Simple_repeat 4 61 0 2 1470 303 28 0 0 chr6 116105210 116105246 -33411791 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1470 292 250 188 35 chr6 116105344 116105514 -33411523 - MIRc SINE MIR -10 258 63 2 1470 1077 205 84 60 chr6 116105921 116106206 -33410831 + B4A SINE B4 1 292 0 2 1470 222 176 0 0 chr6 116106475 116106509 -33410528 - RSINE1 SINE B4 -116 49 16 2 1470 8580 91 43 13 chr6 116106653 116106849 -33410188 - Lx3C LINE L1 -2 6974 6754 2 1470 186 103 0 0 chr6 116106849 116106878 -33410159 + (TGG)n Simple_repeat Simple_repeat 2 30 0 2 1470 8580 92 36 16 chr6 116106878 116108423 -33408614 - Lx3C LINE L1 -223 6753 5204 2 1470 1160 75 0 0 chr6 116108423 116108569 -33408468 - B1_Mus2 SINE Alu 0 147 2 2 1470 8432 93 15 28 chr6 116108569 116109250 -33407787 - Lx3C LINE L1 -683 5203 4534 2 1470 2196 112 19 9 chr6 116109250 116109574 -33407463 + ORR1A2 LTR MaLR 1 327 0 2 1470 14293 98 25 20 chr6 116109576 116109993 -33407044 - Lx3C LINE L1 -1350 4536 4119 2 1470 3122 66 2 2 chr6 116109993 116110389 -33406648 - MTA_Mm LTR MaLR 0 396 1 2 1470 14293 98 25 20 chr6 116110389 116110974 -33406063 - Lx3C LINE L1 -1768 4118 3547 2 1470 1130 95 0 0 chr6 116110974 116111121 -33405916 - B1_Mus2 SINE Alu 0 147 1 2 1470 16282 98 25 20 chr6 116111121 116112406 -33404631 - Lx3C LINE L1 -2340 3546 2229 2 1470 1385 70 16 5 chr6 116112404 116112592 -33404445 - B2_Mm1t SINE B2 0 193 4 2 1470 16282 122 20 54 chr6 116112592 116114235 -33402802 - Lx3C LINE L1 -3658 2228 219 2 1470 324 0 0 0 chr6 116114410 116114446 -33402591 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1470 1234 79 39 6 chr6 116114467 116114624 -33402413 + B2_Mm1a SINE B2 2 160 -33 2 1470 357 24 0 0 chr6 116114624 116114666 -33402371 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2 1470 1234 79 39 6 chr6 116114666 116114687 -33402350 + B2_Mm1a SINE B2 161 186 -7 2 1470 22 0 0 0 chr6 116114752 116114774 -33402263 + AT_rich Low_complexity Low_complexity 1 22 0 2 1470 207 0 0 0 chr6 116114774 116114797 -33402240 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 1470 234 339 0 0 chr6 116115230 116115295 -33401742 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1470 332 311 28 19 chr6 116115348 116115456 -33401581 - B4 SINE B4 -154 138 30 2 1470 205 205 0 0 chr6 116116200 116116239 -33400798 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1470 327 49 0 0 chr6 116116239 116116280 -33400757 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1470 533 266 59 1 chr6 116116312 116116472 -33400565 - B3A SINE B2 -44 172 2 2 1470 275 250 0 32 chr6 116117873 116117935 -33399102 - AluF_3 SINE Alu -114 197 138 2 1470 1605 47 0 5 chr6 116118238 116118431 -33398606 + B2_Mm1t SINE B2 1 192 -1 2 1470 537 235 171 49 chr6 116119053 116119299 -33397738 + LTR48 LTR ERV1 481 756 -31 2 1470 216 0 0 0 chr6 116119338 116119362 -33397675 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1470 802 254 167 13 chr6 116119603 116119842 -33397195 + B4A SINE B4 3 278 -14 2 1470 204 40 0 0 chr6 116119885 116119910 -33397127 + (CATA)n Simple_repeat Simple_repeat 2 26 0 2 1470 243 0 0 0 chr6 116120221 116120248 -33396789 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1470 1128 71 0 0 chr6 116120251 116120391 -33396646 - B1_Mm SINE Alu -6 141 2 2 1470 327 271 306 47 chr6 116120634 116120898 -33396139 + ORR1E LTR MaLR 9 341 -18 2 1470 607 224 16 110 chr6 116121068 116121231 -33395806 + B2_Mm2 SINE B2 1 145 -50 2 1470 3917 138 69 10 chr6 116121231 116121942 -33395095 - RMER6A LTR ERVK -3 753 1 2 1470 607 224 16 110 chr6 116121942 116121969 -33395068 + B2_Mm2 SINE B2 146 172 -23 2 1470 6617 112 15 20 chr6 116122123 116122841 -33394196 + L1VL4 LINE L1 1 724 -5578 2 1470 1157 99 15 90 chr6 116122841 116123041 -33393996 - B2_Mm2 SINE B2 -9 186 2 2 1470 6617 62 3 4 chr6 116123041 116123648 -33393389 + L1VL4 LINE L1 725 1321 -2238 2 1470 2657 49 35 3 chr6 116124530 116124901 -33392136 + L1VL4 LINE L1 1307 1689 -1870 2 1470 7817 78 17 6 chr6 116124898 116126133 -33390904 + L1_Mus4 LINE L1 5388 6636 0 2 1470 311 123 35 0 chr6 116126337 116126394 -33390643 + GA-rich Low_complexity Low_complexity 3 61 0 2 1470 252 0 0 0 chr6 116126394 116126422 -33390615 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 2 1470 1337 254 66 30 chr6 116126708 116127074 -33389963 - MTEa LTR MaLR 0 379 1 2 1470 526 322 121 54 chr6 116127234 116127605 -33389432 + MER21B LTR ERV1 316 711 -152 2 1470 25 31 0 0 chr6 116128012 116128044 -33388993 + AT_rich Low_complexity Low_complexity 1 32 0 2 1470 1790 115 71 0 chr6 116128247 116128542 -33388495 - ORR1A3 LTR MaLR -10 316 1 2 183 10055 118 97 83 chr6 116128542 116130478 -33386559 - ORR1A3-int LTR MaLR 0 1963 1 2 1471 2121 114 55 0 chr6 116130478 116130783 -33386254 - ORR1A3 LTR MaLR -2 324 1 2 1471 492 293 15 0 chr6 116130783 116130916 -33386121 - B3A SINE B2 -47 151 17 2 1471 644 301 53 27 chr6 116130926 116131189 -33385848 + RLTR16 LTR ERVK 24 293 -212 2 1471 198 0 0 0 chr6 116131538 116131560 -33385477 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1471 613 246 156 51 chr6 116131953 116132210 -33384827 + RMER13A LTR ERVK 95 378 -482 3 1471 1270 34 0 0 chr6 116132223 116132370 -33384667 + B1_Mus2 SINE Alu 1 147 0 3 1471 198 0 0 0 chr6 116132370 116132392 -33384645 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1471 303 252 143 45 chr6 116133082 116133194 -33383843 + RSINE1 SINE B4 43 165 0 3 1471 816 101 0 0 chr6 116133810 116133929 -33383108 + B1_Mus1 SINE Alu 1 119 -29 3 1471 341 93 0 18 chr6 116134026 116134081 -33382956 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 3 1471 948 180 51 15 chr6 116134100 116134297 -33382740 + B3 SINE B2 13 216 0 3 1471 320 288 72 3 chr6 116134522 116134636 -33382401 + MER5A1 DNA MER1_type 8 120 -46 3 1471 1069 116 0 0 chr6 116135295 116135442 -33381595 + B1_Mus1 SINE Alu 2 148 0 3 1471 614 266 0 0 chr6 116135548 116135672 -33381365 + RSINE1 SINE B4 7 130 -35 3 1471 699 273 22 28 chr6 116135737 116135918 -33381119 + B3A SINE B2 1 180 -18 3 1471 911 222 18 27 chr6 116135962 116136184 -33380853 + ID_B1 SINE B4 1 220 -4 3 1471 589 244 0 0 chr6 116136208 116136331 -33380706 + B3 SINE B2 11 133 -83 3 1471 271 196 54 0 chr6 116136338 116136394 -33380643 + B3A SINE B2 1 59 -139 3 1471 25 31 0 0 chr6 116136421 116136453 -33380584 + AT_rich Low_complexity Low_complexity 1 32 0 3 1471 494 241 134 8 chr6 116137225 116137359 -33379678 + B3 SINE B2 50 200 -16 3 1471 297 0 0 0 chr6 116137363 116137396 -33379641 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1471 385 294 203 45 chr6 116137420 116137794 -33379243 + L1MC3 LINE L1 6527 6959 -826 3 1471 366 249 94 35 chr6 116137946 116138063 -33378974 + B3A SINE B2 82 203 -13 3 1471 905 226 135 25 chr6 116138088 116138406 -33378631 + L1MC3 LINE L1 7327 7679 -106 3 1471 1185 48 0 14 chr6 116138407 116138555 -33378482 + B1_Mus2 SINE Alu 2 147 0 3 1471 238 306 45 9 chr6 116138585 116138697 -33378340 + L1MC3 LINE L1 7670 7785 0 3 1471 183 167 0 0 chr6 116138804 116138846 -33378191 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1471 445 214 0 0 chr6 116138856 116138944 -33378093 + ID4 SINE ID 4 91 -61 3 1471 414 137 46 36 chr6 116140348 116140444 -33376593 + B1_Mur3 SINE Alu 52 149 0 3 1471 1198 68 0 0 chr6 116140451 116140598 -33376439 + B1_Mus2 SINE Alu 1 147 0 3 1471 216 0 0 0 chr6 116140774 116140798 -33376239 + (CATA)n Simple_repeat Simple_repeat 3 26 0 3 1471 585 284 153 0 chr6 116141061 116141315 -33375722 + MER58B DNA MER1_type 34 326 -15 3 1471 271 295 14 102 chr6 116141372 116141519 -33375518 + L2c LINE L2 3254 3387 0 3 1471 213 195 0 0 chr6 116143051 116143092 -33373945 + G-rich Low_complexity Low_complexity 2 42 0 3 1471 246 116 0 0 chr6 116143410 116143453 -33373584 + (CCG)n Simple_repeat Simple_repeat 2 44 0 3 1471 249 233 133 0 chr6 116144777 116144867 -33372170 + L1M4 LINE L1 4992 5093 -1053 3 1471 227 250 139 0 chr6 116145031 116145103 -33371934 - ID2 SINE ID 0 83 2 3 1471 493 214 126 27 chr6 116145105 116145288 -33371749 + L1M4 LINE L1 5293 5493 -671 3 1471 376 233 11 0 chr6 116145899 116145989 -33371048 - ORR1C2 LTR MaLR -39 345 255 3 1471 268 151 38 0 chr6 116145989 116146042 -33370995 - ORR1C2 LTR MaLR -261 106 52 3 1471 529 230 9 9 chr6 116146114 116146228 -33370809 + PB1D9 SINE Alu 7 120 0 3 1471 567 209 17 0 chr6 116146390 116146505 -33370532 - B3 SINE B2 -5 211 95 3 1471 3464 164 38 93 chr6 116146506 116146801 -33370236 - RLTR21 LTR ERVK 0 1572 1304 3 1471 324 0 0 0 chr6 116146801 116146837 -33370200 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1471 3464 164 38 93 chr6 116146837 116146878 -33370159 - RLTR21 LTR ERVK -269 1303 1256 3 1471 258 105 0 0 chr6 116146878 116146916 -33370121 + (CATG)n Simple_repeat Simple_repeat 1 38 0 3 1471 3464 164 38 93 chr6 116146916 116147004 -33370033 - RLTR21 LTR ERVK -317 1255 1180 3 1471 234 91 0 0 chr6 116147004 116147037 -33370000 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1471 3464 164 38 93 chr6 116147037 116147094 -33369943 - RLTR21 LTR ERVK -393 1179 1129 3 1471 198 103 0 0 chr6 116147094 116147123 -33369914 + (CATA)n Simple_repeat Simple_repeat 3 31 0 3 1471 3464 164 38 93 chr6 116147123 116147530 -33369507 - RLTR21 LTR ERVK -444 1128 731 3 1471 260 250 27 40 chr6 116147529 116147604 -33369433 + RSINE1 SINE B4 84 157 -8 3 1471 22 35 0 0 chr6 116147604 116147633 -33369404 + AT_rich Low_complexity Low_complexity 1 29 0 3 1471 864 211 39 6 chr6 116147652 116147833 -33369204 + B3 SINE B2 9 195 -21 3 1471 31 0 0 0 chr6 116148294 116148325 -33368712 + AT_rich Low_complexity Low_complexity 1 31 0 3 1471 344 269 215 7 chr6 116148325 116148460 -33368577 - B3A SINE B2 -35 163 1 3 1471 695 174 0 102 chr6 116149427 116149574 -33367463 + B1_Mus2 SINE Alu 10 141 -6 3 1471 573 250 51 0 chr6 116149786 116149942 -33367095 + B3 SINE B2 2 165 -51 3 1471 348 281 34 20 chr6 116149967 116150085 -33366952 + B3A SINE B2 15 140 -55 3 1471 334 70 35 17 chr6 116150229 116150287 -33366750 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 3 1471 1159 65 0 0 chr6 116150289 116150427 -33366610 + B1_Mm SINE Alu 1 138 -9 3 1471 429 36 0 0 chr6 116150427 116150482 -33366555 + (CATA)n Simple_repeat Simple_repeat 2 56 0 3 1471 275 269 25 25 chr6 116150665 116150745 -33366292 + ID4_ SINE ID 2 81 -2 3 1471 1163 113 56 0 chr6 116150981 116151176 -33365861 - ORR1B1 LTR MaLR -8 386 181 3 1471 766 121 32 0 chr6 116151180 116151304 -33365733 - MT2B LTR ERVL -471 130 3 3 1471 197 255 0 12 chr6 116152238 116152305 -33364732 + MIRm SINE MIR 99 165 -103 3 1471 271 228 25 12 chr6 116152375 116152455 -33364582 - L1MC4 LINE L1 -1 8041 7961 3 1471 1375 184 167 0 chr6 116152617 116152964 -33364073 + MTD LTR MaLR 1 405 -14 3 1471 644 239 71 87 chr6 116153060 116153243 -33363794 - B3 SINE B2 -9 186 7 3 1471 317 340 39 0 chr6 116153297 116153400 -33363637 - ID_B1 SINE B4 -116 108 2 3 1471 506 289 19 0 chr6 116153487 116153646 -33363391 - L1MC4 LINE L1 -391 7651 7490 3 1471 186 150 0 0 chr6 116153856 116153896 -33363141 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 3 1471 335 205 24 12 chr6 116153976 116154060 -33362977 - L1M4 LINE L1 -886 5260 5176 3 1471 750 305 19 14 chr6 116154082 116154295 -33362742 - ID_B1 SINE B4 -10 214 1 3 1471 201 138 0 0 chr6 116154303 116154332 -33362705 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 3 1471 280 257 26 0 chr6 116154334 116154425 -33362612 - B1_Mur2 SINE Alu 0 149 52 3 1471 228 218 36 0 chr6 116154781 116154836 -33362201 - L1MC4 LINE L1 -1126 6659 6603 3 1471 320 206 44 37 chr6 116154840 116154976 -33362061 + (TTAGGG)n Simple_repeat Simple_repeat 4 140 0 3 1471 256 320 39 0 chr6 116155010 116155163 -33361874 + (TTAGGG)n Simple_repeat Simple_repeat 3 161 0 3 1471 413 289 11 6 chr6 116155238 116155350 -33361687 + (TTAGGG)n Simple_repeat Simple_repeat 3 114 0 3 1471 2429 175 10 5 chr6 116155350 116155768 -33361269 + MTC LTR MaLR 1 420 -1 3 1471 413 289 11 6 chr6 116155768 116155829 -33361208 + (TTAGGG)n Simple_repeat Simple_repeat 1 62 0 3 1471 285 172 10 48 chr6 116155891 116155995 -33361042 + (TTAGGG)n Simple_repeat Simple_repeat 3 102 0 3 1471 289 198 0 23 chr6 116156056 116156144 -33360893 + (CCCTAA)n Simple_repeat Simple_repeat 1 86 0 3 1471 559 246 7 15 chr6 116156157 116156293 -33360744 - B1_Mur1 SINE Alu 0 149 15 3 1471 247 322 11 33 chr6 116156381 116156471 -33360566 - B1_Mur3 SINE Alu -61 88 1 3 1471 267 193 46 31 chr6 116156588 116156669 -33360368 + MTEb LTR MaLR 293 379 0 3 1471 1142 251 88 11 chr6 116156848 116157211 -33359826 - L1MB8 LINE L1 -153 6025 5635 3 1471 818 50 225 0 chr6 116157364 116157484 -33359553 - B1_Mus2 SINE Alu 0 147 1 3 1471 1018 141 0 0 chr6 116159608 116159757 -33357280 - B1_Mur4 SINE Alu 0 150 2 3 1471 370 279 147 0 chr6 116160082 116160211 -33356826 - B1F2 SINE Alu 0 149 2 3 1471 710 110 0 0 chr6 116160972 116161081 -33355956 - B2_Mm2 SINE B2 -85 110 2 3 1471 296 191 30 45 chr6 116162034 116162100 -33354937 - PB1D7 SINE Alu 0 120 56 3 1471 809 180 130 47 chr6 116162133 116162325 -33354712 + B3 SINE B2 1 208 -8 3 1471 490 69 0 0 chr6 116162457 116162529 -33354508 - B1_Mus2 SINE Alu -74 73 2 3 1471 245 284 11 74 chr6 116162529 116162555 -33354482 - MT2B LTR ERVL -443 158 139 3 1471 643 167 8 16 chr6 116162633 116162755 -33354282 - B1_Mur1 SINE Alu -10 139 19 3 1471 916 180 112 27 chr6 116162834 116163022 -33354015 - B3 SINE B2 -10 206 3 3 1471 441 230 60 0 chr6 116163783 116163883 -33353154 - Lx4B LINE L1 -249 6809 6704 3 1471 291 104 0 0 chr6 116164044 116164092 -33352945 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 3 1471 1179 68 0 0 chr6 116164092 116164239 -33352798 - B1_Mus2 SINE Alu 0 147 1 3 1471 478 181 33 33 chr6 116165702 116165822 -33351215 - PB1D9 SINE Alu 0 120 1 3 1471 1074 81 0 0 chr6 116166605 116166741 -33350296 - B1_Mus1 SINE Alu -12 136 1 3 1471 1165 211 120 27 chr6 116166983 116167357 -33349680 - Lx9 LINE L1 0 7644 7236 3 1471 274 153 16 48 chr6 116167506 116167568 -33349469 - B1_Mur4 SINE Alu -38 112 53 3 1471 258 282 94 0 chr6 116167906 116168023 -33349014 - L1MC4 LINE L1 -1 8041 7914 3 1471 244 317 18 71 chr6 116168321 116168433 -33348604 - RSINE1 SINE B4 -36 129 24 3 1471 696 232 45 11 chr6 116169113 116169292 -33347745 - B3A SINE B2 -12 186 2 3 1471 222 109 0 83 chr6 116170776 116170836 -33346201 + T-rich Low_complexity Low_complexity 3 57 0 3 1471 1202 68 0 0 chr6 116170836 116170983 -33346054 - B1_Mus2 SINE Alu 0 147 1 3 1471 866 282 31 0 chr6 116170984 116171207 -33345830 - B4A SINE B4 -62 230 1 3 1471 352 300 16 24 chr6 116171254 116171377 -33345660 - B3A SINE B2 -2 196 75 3 1471 306 67 0 0 chr6 116171988 116172033 -33345004 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1471 410 278 102 8 chr6 116172033 116172160 -33344877 - ID_B1 SINE B4 0 224 86 3 1471 1413 70 32 0 chr6 116172247 116172434 -33344603 - B2_Mm2 SINE B2 -1 194 2 3 1471 578 136 134 99 chr6 116172606 116172777 -33344260 - URR1B DNA MER1_type 0 225 49 3 1471 1476 59 11 0 chr6 116173471 116173658 -33343379 - B2_Mm1a SINE B2 -4 189 1 3 1471 1226 54 0 0 chr6 116173935 116174082 -33342955 - B1_Mus2 SINE Alu 0 147 1 4 1471 437 281 7 54 chr6 116174249 116174396 -33342641 - B1F SINE Alu -9 140 1 4 1471 730 228 199 10 chr6 116175099 116175403 -33341634 - MTD LTR MaLR -14 405 3 4 1471 3306 48 0 8 chr6 116175566 116175965 -33341072 - MTA_Mm LTR MaLR 0 396 1 4 1471 27 0 0 0 chr6 116176194 116176221 -33340816 + AT_rich Low_complexity Low_complexity 1 27 0 4 1471 352 285 80 7 chr6 116176264 116176402 -33340635 - B1F1 SINE Alu 0 149 2 4 1471 290 26 26 0 chr6 116176523 116176562 -33340475 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1471 478 255 91 113 chr6 116176650 116176871 -33340166 - B4A SINE B4 -73 219 4 4 1471 209 182 0 0 chr6 116177129 116177162 -33339875 + polypurine Low_complexity Low_complexity 4 36 0 4 1471 195 162 0 0 chr6 116177475 116177512 -33339525 + (ATG)n Simple_repeat Simple_repeat 2 38 0 4 1471 400 304 53 18 chr6 116178261 116178432 -33338605 + B4A SINE B4 116 292 0 4 1471 234 62 0 0 chr6 116178456 116178488 -33338549 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 4 1471 333 62 0 0 chr6 116179147 116179195 -33337842 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1471 647 219 250 15 chr6 116179464 116179804 -33337233 - MTD LTR MaLR 0 419 1 4 1471 249 221 0 0 chr6 116180250 116180318 -33336719 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 4 1471 1031 192 186 157 chr6 116180321 116180798 -33336239 - MT2A LTR ERVL -71 462 1 4 1471 289 241 0 36 chr6 116181765 116181821 -33335216 + ID4_ SINE ID 2 55 -28 4 1471 296 111 0 18 chr6 116181871 116181926 -33335111 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1471 1639 193 70 11 chr6 116182288 116182645 -33334392 - MTD LTR MaLR 0 419 42 4 1471 2968 90 8 2 chr6 116182647 116183049 -33333988 - MTB_Mm LTR MaLR 0 407 4 4 1471 285 75 0 0 chr6 116183146 116183186 -33333851 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1471 360 221 0 29 chr6 116183222 116183292 -33333745 - ID4_ SINE ID -15 68 1 4 1471 7591 104 31 9 chr6 116183337 116185240 -33331797 - Lx LINE L1 -1 6653 4706 4 1471 378 0 0 0 chr6 116186391 116186433 -33330604 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1471 1716 16 0 20 chr6 116186925 116187122 -33329915 + B2_Mm1a SINE B2 1 193 0 4 1471 26 0 0 0 chr6 116187445 116187471 -33329566 + AT_rich Low_complexity Low_complexity 1 26 0 4 1471 753 129 14 14 chr6 116187760 116187902 -33329135 - B2_Mm2 SINE B2 -7 188 47 4 1471 414 0 0 0 chr6 116187922 116187968 -33329069 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 4 1471 342 0 0 0 chr6 116187968 116188005 -33329032 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 4 1471 240 262 17 39 chr6 116188644 116188823 -33328214 + (AAGTG)n Simple_repeat Simple_repeat 3 177 0 4 1471 240 262 17 39 chr6 116188962 116189141 -33327896 + (AAGTG)n Simple_repeat Simple_repeat 3 177 0 4 1471 2065 199 10 12 chr6 116190350 116190767 -33326270 - MTD LTR MaLR -1 418 3 4 1471 490 272 9 0 chr6 116190816 116190930 -33326107 + ID_B1 SINE B4 110 224 0 4 1471 414 57 0 0 chr6 116191164 116191217 -33325820 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1471 447 315 54 30 chr6 116191250 116191417 -33325620 - B4A SINE B4 -111 181 11 4 1471 450 83 0 0 chr6 116191723 116191795 -33325242 + (CAGA)n Simple_repeat Simple_repeat 4 75 0 4 1471 247 327 67 0 chr6 116192641 116192745 -33324292 + MIR SINE MIR 25 135 -73 4 1471 1292 65 65 0 chr6 116193187 116193355 -33323682 + B2_Mm1t SINE B2 1 179 -14 4 1471 307 109 0 33 chr6 116193420 116193529 -33323508 + B2_Mm2 SINE B2 47 195 0 4 1471 1528 261 58 11 chr6 116193573 116194042 -33322995 + L1MB8 LINE L1 5541 6031 -147 4 1471 266 337 84 22 chr6 116194951 116195130 -33321907 - ORR1E LTR MaLR -167 192 3 4 1471 1185 41 14 0 chr6 116196607 116196752 -33320285 - B1_Mm SINE Alu 0 147 1 4 1471 230 314 84 19 chr6 116197386 116197493 -33319544 + MER104 DNA Tc2 50 163 -18 4 1471 1322 307 92 22 chr6 116198649 116199360 -33317677 - Lx9 LINE L1 -675 6969 6088 4 1471 1429 282 30 17 chr6 116199389 116199855 -33317182 + L1_Rod LINE L1 5376 5847 0 4 1471 357 73 330 9 chr6 116199929 116200038 -33316999 - B2_Mm2 SINE B2 -5 190 47 4 1471 1149 97 6 0 chr6 116200074 116200239 -33316798 - B2_Mm1t SINE B2 -26 167 2 4 1471 1082 187 0 15 chr6 116200258 116200454 -33316583 - B3 SINE B2 -4 212 20 4 1471 444 287 134 1 chr6 116200479 116200698 -33316339 + L1M4 LINE L1 3689 3936 -2210 4 1471 2565 58 6 0 chr6 116200698 116201023 -33316014 + L1_Mus3 LINE L1 6310 6636 -2 4 1471 284 319 119 37 chr6 116201023 116201047 -33315990 + L1M4 LINE L1 3934 3952 -2191 4 1471 331 305 66 0 chr6 116202043 116202194 -33314843 + L1M4 LINE L1 3974 4134 -2012 4 1471 981 65 12 44 chr6 116202351 116202511 -33314526 - L1_Mus3 LINE L1 -5 6633 6479 4 1471 290 134 107 24 chr6 116202525 116202609 -33314428 + L1M4 LINE L1 4353 4443 -1703 4 1471 321 247 30 40 chr6 116203123 116203224 -33313813 + RSINE1 SINE B4 3 102 -63 4 1471 306 209 77 103 chr6 116203237 116203354 -33313683 + B4A SINE B4 157 270 -22 4 1471 24 32 0 0 chr6 116203523 116203554 -33313483 + AT_rich Low_complexity Low_complexity 1 31 0 4 1471 430 262 24 24 chr6 116203580 116203705 -33313332 - B4A SINE B4 -166 126 2 4 1471 1229 48 0 0 chr6 116205696 116205842 -33311195 - B1_Mus1 SINE Alu 0 148 3 4 1471 450 256 65 48 chr6 116208051 116208219 -33308818 + B3 SINE B2 2 172 -44 4 1471 925 153 175 0 chr6 116208362 116208551 -33308486 + URR1A DNA MER1_type 5 226 0 4 1471 1559 32 0 26 chr6 116209475 116209665 -33307372 - B2_Mm1a SINE B2 -8 185 1 4 1471 646 9 25 58 chr6 116209813 116209933 -33307104 + (CATAG)n Simple_repeat Simple_repeat 3 118 0 4 1471 211 204 40 0 chr6 116213782 116213843 -33303194 - MIRb SINE MIR -102 166 104 4 1471 237 263 0 0 chr6 116214278 116214335 -33302702 + (CGGG)n Simple_repeat Simple_repeat 4 60 0 4 1471 189 94 0 0 chr6 116214336 116214368 -33302669 + (CGCGG)n Simple_repeat Simple_repeat 1 32 0 4 1471 1195 7 0 93 chr6 116215152 116215314 -33301723 + B1_Mm SINE Alu 1 147 0 4 1471 241 316 26 9 chr6 116215570 116215685 -33301352 - ID4_ SINE ID -24 128 12 4 1471 188 291 74 33 chr6 116216174 116216295 -33300742 - L2c LINE L2 -5 3382 3257 4 1471 274 271 138 8 chr6 116216781 116216904 -33300133 + L1MC1 LINE L1 5467 5605 -728 4 1471 483 255 149 39 chr6 116216912 116217116 -33299921 + B4A SINE B4 1 227 -65 4 1471 1104 91 24 0 chr6 116217116 116217281 -33299756 + B2_Mm2 SINE B2 1 169 -26 4 1471 1439 275 70 33 chr6 116217455 116218053 -33298984 + L1MC1 LINE L1 5705 6324 -9 4 1471 192 125 0 0 chr6 116218397 116218429 -33298608 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1471 373 246 13 12 chr6 116218825 116218920 -33298117 + PB1D10 SINE Alu 2 97 -50 4 1471 254 210 16 0 chr6 116219107 116219169 -33297868 + ID4 SINE ID 2 64 -19 4 1471 947 282 67 69 chr6 116219196 116219364 -33297673 + L1MB7 LINE L1 3614 3766 -2380 4 1471 186 43 0 0 chr6 116219364 116219387 -33297650 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 4 1471 947 282 67 69 chr6 116219387 116219945 -33297092 + L1MB7 LINE L1 3767 4338 -1808 4 1471 714 274 205 23 chr6 116219955 116220437 -33296600 + L1MB7 LINE L1 4699 5268 -878 4 1471 27 29 0 0 chr6 116220442 116220476 -33296561 + AT_rich Low_complexity Low_complexity 1 34 0 4 1471 249 323 21 10 chr6 116220668 116220765 -33296272 - Lx7 LINE L1 -373 7323 7226 4 1471 1288 210 70 58 chr6 116220826 116221154 -33295883 - Lx6 LINE L1 -180 7280 6949 4 1471 2506 178 87 2 chr6 116221137 116221611 -33295426 - Lx6 LINE L1 -773 6687 6174 4 1471 783 303 116 27 chr6 116221629 116222110 -33294927 + L1MB7 LINE L1 5316 5839 -345 4 1471 446 0 19 0 chr6 116222438 116222492 -33294545 + (TTA)n Simple_repeat Simple_repeat 2 56 0 4 1471 3297 108 13 4 chr6 116222503 116222967 -33294070 - Lx3A LINE L1 -10 6971 6504 4 1471 616 236 30 98 chr6 116225252 116225416 -33291621 - RSINE1 SINE B4 0 165 13 4 1471 220 122 40 20 chr6 116225736 116225786 -33291251 + C-rich Low_complexity Low_complexity 4 54 0 4 1471 527 206 33 36 chr6 116225864 116226034 -33291003 - MTC LTR MaLR -227 173 3 4 1471 1967 271 72 35 chr6 116226039 116226223 -33290814 - MTC-int LTR MaLR -4 1254 1085 4 1471 747 143 30 60 chr6 116226223 116226357 -33290680 + B1_Mur3 SINE Alu 5 134 -15 4 1471 1967 271 72 35 chr6 116226357 116226823 -33290214 - MTC-int LTR MaLR -174 1084 580 4 1471 472 191 11 0 chr6 116226827 116226916 -33290121 - MTC LTR MaLR -331 90 1 4 1471 226 203 16 63 chr6 116226921 116226984 -33290053 - L1MC3 LINE L1 -1012 6773 6714 4 1471 2720 267 159 13 chr6 116227542 116228648 -33288389 + Lx8 LINE L1 6191 7458 -15 4 1471 239 215 30 15 chr6 116229139 116229205 -33287832 + CT-rich Low_complexity Low_complexity 2 68 0 4 1471 755 234 24 47 chr6 116229548 116229718 -33287319 + B3A SINE B2 2 167 -31 4 1471 191 32 65 0 chr6 116230011 116230042 -33286995 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1471 503 274 8 8 chr6 116230125 116230250 -33286787 + MER70B LTR ERVL 85 209 -369 4 1471 630 242 78 14 chr6 116230322 116230540 -33286497 - L1M4 LINE L1 -5339 1203 972 4 1471 3176 42 0 32 chr6 116230801 116231170 -33285867 - IAPEY2_LTR LTR ERVK 0 357 1 4 1471 435 298 20 54 chr6 116231279 116231428 -33285609 + RSINE1 SINE B4 5 148 -17 4 1471 21 0 0 0 chr6 116231603 116231624 -33285413 + AT_rich Low_complexity Low_complexity 1 21 0 4 1471 654 118 0 0 chr6 116231824 116231926 -33285111 + (TCCA)n Simple_repeat Simple_repeat 1 102 0 4 1471 462 278 21 0 chr6 116231957 116232054 -33284983 - RSINE1 SINE B4 -65 100 2 4 1471 2294 276 44 60 chr6 116232058 116232703 -33284334 - L1M2 LINE L1 -1353 4790 4161 4 1471 1183 126 17 11 chr6 116232703 116232880 -33284157 - B2_Mm1t SINE B2 -14 179 2 4 1471 2294 276 44 60 chr6 116232880 116233165 -33283872 - L1M2 LINE L1 -1983 4160 3875 4 1471 405 124 9 118 chr6 116233280 116233390 -33283647 - Lx7 LINE L1 -207 7489 7392 4 1471 392 284 64 0 chr6 116233886 116233995 -33283042 - B1F1 SINE Alu -31 118 3 5 1471 565 328 67 61 chr6 116234025 116234337 -33282700 + MLT1A0 LTR MaLR 46 359 -6 5 1471 1004 143 20 0 chr6 116235506 116235653 -33281384 - B1_Mur4 SINE Alu 0 150 1 5 1471 248 330 124 0 chr6 116236587 116236684 -33280353 + PB1D10 SINE Alu 3 111 -6 5 1471 293 341 25 3 chr6 116237292 116237405 -33279632 - ID4_ SINE ID -36 116 2 5 1471 23 86 0 0 chr6 116238372 116238430 -33278607 + AT_rich Low_complexity Low_complexity 1 58 0 5 1471 246 344 90 48 chr6 116238738 116238763 -33278274 - B3A SINE B2 0 198 2 5 1471 606 289 24 30 chr6 116238763 116238927 -33278110 - RSINE1 SINE B4 0 165 3 5 1471 241 328 106 35 chr6 116239249 116239448 -33277589 - MLT1E LTR MaLR -86 594 382 5 1471 334 316 151 48 chr6 116239444 116239459 -33277578 - MLT1E LTR MaLR -440 213 204 5 1471 3713 25 0 0 chr6 116239459 116239855 -33277182 - MTA_Mm LTR MaLR 0 396 1 5 1471 334 316 151 48 chr6 116239855 116240025 -33277012 - MLT1E LTR MaLR -450 203 9 5 1471 312 333 95 62 chr6 116240099 116240117 -33276920 - B4A SINE B4 -46 246 185 5 1471 781 155 16 0 chr6 116240117 116240246 -33276791 - B1_Mus1 SINE Alu 0 148 18 5 1471 312 333 95 62 chr6 116240246 116240278 -33276759 - B4A SINE B4 -46 184 62 5 1471 225 232 89 0 chr6 116240595 116240651 -33276386 - B4A SINE B4 -146 146 86 5 1471 279 0 0 0 chr6 116240686 116240717 -33276320 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1471 472 297 25 8 chr6 116240717 116240836 -33276201 - RSINE1 SINE B4 -41 124 4 5 1471 996 146 0 0 chr6 116241176 116241390 -33275647 + (TG)n Simple_repeat Simple_repeat 1 214 0 5 1471 397 226 47 0 chr6 116241394 116241500 -33275537 - RSINE1 SINE B4 -36 129 19 5 1471 243 257 58 189 chr6 116241513 116241719 -33275318 + MTEa LTR MaLR 201 379 0 5 1471 21 36 0 0 chr6 116242683 116242711 -33274326 + AT_rich Low_complexity Low_complexity 1 28 0 5 1471 256 262 29 58 chr6 116242771 116242840 -33274197 - ID SINE ID -156 68 2 5 1471 264 276 52 13 chr6 116242997 116243074 -33273963 - RSINE1 SINE B4 -85 80 1 5 1471 517 227 72 96 chr6 116243357 116243523 -33273514 + RSINE1 SINE B4 3 164 -1 5 1471 9013 39 14 2 chr6 116243813 116245571 -33271466 - L1Md_F2 LINE L1 0 6582 4804 5 1471 455 234 66 93 chr6 116245686 116245837 -33271200 + B1_Mur1 SINE Alu 3 149 0 5 1471 365 290 88 14 chr6 116246015 116246162 -33270875 - Cheshire DNA MER1_type -2256 164 7 5 1471 495 202 250 8 chr6 116246311 116246431 -33270606 + B1F SINE Alu 1 149 0 5 1471 729 232 19 81 chr6 116246560 116246771 -33270266 + B3A SINE B2 1 198 0 5 1471 21 0 0 0 chr6 116246819 116246840 -33270197 + AT_rich Low_complexity Low_complexity 1 21 0 5 1471 296 290 0 78 chr6 116246912 116247028 -33270009 - B1_Mur1 SINE Alu -3 146 40 5 1471 386 275 12 0 chr6 116247020 116247133 -33269904 + B1F1 SINE Alu 13 127 -22 5 1471 225 0 0 0 chr6 116247286 116247311 -33269726 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1471 682 21 21 41 chr6 116247311 116247400 -33269637 - B1_Mm SINE Alu -7 140 53 5 1471 254 172 101 72 chr6 116247346 116247415 -33269622 - RLTR25A LTR ERVK -521 582 512 5 1471 217 341 24 35 chr6 116247690 116247775 -33269262 + MIRb SINE MIR 36 119 -149 5 1471 530 188 40 34 chr6 116247798 116247917 -33269120 - B1_Mur2 SINE Alu 0 149 32 5 1471 2458 172 0 22 chr6 116248613 116249028 -33268009 - MTD LTR MaLR 0 419 14 5 1471 4163 246 100 51 chr6 116249106 116249944 -33267093 + L1_Mur3 LINE L1 2099 2996 -2884 5 1471 559 221 302 0 chr6 116249944 116250093 -33266944 + B3 SINE B2 4 197 -19 5 1471 4163 246 100 51 chr6 116250093 116250278 -33266759 + L1_Mur3 LINE L1 2997 3151 -2729 5 1471 415 190 171 48 chr6 116250278 116250383 -33266654 + PB1D9 SINE Alu 2 119 -1 5 1471 4163 251 113 50 chr6 116250383 116251098 -33265939 + L1_Mur3 LINE L1 3152 4052 -1834 5 1471 824 103 26 0 chr6 116251098 116251215 -33265822 + PB1D9 SINE Alu 1 120 0 5 1471 2798 277 190 46 chr6 116251215 116251656 -33265381 + L1_Mur3 LINE L1 4053 4587 -1299 5 1471 1174 34 0 70 chr6 116251656 116251800 -33265237 + B1_Mm SINE Alu 1 138 -9 5 1471 198 71 0 0 chr6 116251800 116251828 -33265209 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 1471 1174 34 0 70 chr6 116251828 116251841 -33265196 + B1_Mm SINE Alu 139 147 0 5 1471 2205 98 55 20 chr6 116251936 116252571 -33264466 + Lx LINE L1 5769 6654 0 5 1471 23 54 0 0 chr6 116252574 116252611 -33264426 + AT_rich Low_complexity Low_complexity 1 37 0 5 1471 3476 248 83 48 chr6 116252611 116252775 -33264262 + Lx7 LINE L1 4623 4751 -1129 5 1471 993 224 61 10 chr6 116252775 116252973 -33264064 + B3 SINE B2 1 208 -8 5 1471 3476 248 83 46 chr6 116252973 116254059 -33262978 + Lx7 LINE L1 4752 5918 -1778 5 1471 406 284 86 101 chr6 116254075 116254353 -33262684 + Lx7 LINE L1 7168 7441 -32 5 1471 688 225 48 21 chr6 116254410 116254555 -33262482 - B1_Mur1 SINE Alu 0 149 1 5 1471 345 276 20 0 chr6 116254628 116254726 -33262311 - RSINE1 SINE B4 -63 102 3 5 1471 210 234 0 0 chr6 116254938 116254985 -33262052 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1471 660 317 59 0 chr6 116255077 116255263 -33261774 - B4 SINE B4 -95 197 1 5 1471 714 263 65 38 chr6 116255282 116255468 -33261569 + ID_B1 SINE B4 4 194 -30 5 1471 21 0 0 0 chr6 116256044 116256065 -33260972 + AT_rich Low_complexity Low_complexity 1 21 0 5 1471 370 328 17 33 chr6 116256089 116256105 -33260932 - ID_B1 SINE B4 -12 212 95 5 1471 541 260 0 0 chr6 116256105 116256209 -33260828 - B1F SINE Alu -32 117 14 5 1471 186 71 0 0 chr6 116256336 116256364 -33260673 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 5 1471 847 174 0 7 chr6 116256707 116256852 -33260185 - B1_Mur2 SINE Alu 0 149 6 5 1471 537 198 0 0 chr6 116256909 116257030 -33260007 + (TA)n Simple_repeat Simple_repeat 1 121 0 5 1471 28 29 0 0 chr6 116257113 116257148 -33259889 + AT_rich Low_complexity Low_complexity 1 35 0 5 1471 331 62 44 59 chr6 116257214 116257282 -33259755 - B2_Mm2 SINE B2 -2 193 127 5 1471 359 123 61 15 chr6 116257506 116257572 -33259465 + B1F SINE Alu 80 148 -1 5 1471 255 293 122 29 chr6 116257620 116257866 -33259171 - L1M5 LINE L1 -623 5550 5282 5 1471 274 279 67 9 chr6 116257887 116257992 -33259045 + ID_B1 SINE B4 105 215 -9 5 1471 404 324 86 21 chr6 116258087 116258330 -33258707 - L1M5 LINE L1 -968 5178 4920 5 1471 208 143 0 0 chr6 116258586 116258621 -33258416 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1471 259 270 96 24 chr6 116258635 116258802 -33258235 + L1M5 LINE L1 2737 2915 -3231 5 1471 28 61 0 0 chr6 116259029 116259078 -33257959 + AT_rich Low_complexity Low_complexity 1 49 0 5 1471 372 285 144 16 chr6 116259095 116259220 -33257817 - B1F SINE Alu -2 147 7 5 1471 452 286 128 0 chr6 116259400 116259533 -33257504 - L1MB3 LINE L1 -287 5896 5747 5 1471 369 0 0 0 chr6 116259577 116259618 -33257419 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1471 301 322 8 8 chr6 116259851 116259970 -33257067 - L1MC4 LINE L1 -480 7562 7444 5 1471 212 0 36 0 chr6 116260080 116260108 -33256929 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1471 237 65 0 0 chr6 116260527 116260558 -33256479 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 1471 583 127 256 25 chr6 116260582 116260703 -33256334 - B1_Mur4 SINE Alu 0 150 2 5 1472 1805 172 80 36 chr6 116261267 116261629 -33255408 - ORR1C1 LTR MaLR 0 378 1 5 1472 220 348 67 0 chr6 116261659 116261748 -33255289 - PB1D10 SINE Alu -18 99 5 5 1472 247 224 123 49 chr6 116261786 116261908 -33255129 - L1MC4 LINE L1 -5367 848 718 5 1472 322 0 0 0 chr6 116261922 116261961 -33255076 - B1_Mur4 SINE Alu -111 39 1 5 1472 283 126 0 52 chr6 116261961 116261999 -33255038 - ID_B1 SINE B4 -169 123 54 5 1472 24 0 0 0 chr6 116262584 116262608 -33254429 + AT_rich Low_complexity Low_complexity 1 24 0 5 1472 519 326 75 88 chr6 116262981 116263365 -33253672 - MER68 LTR ERVL -180 383 5 5 1472 425 311 14 48 chr6 116263591 116263608 -33253429 - ID_B1 SINE B4 -65 227 159 5 1472 575 210 23 39 chr6 116263608 116263737 -33253300 - B1F2 SINE Alu -22 127 1 5 1472 425 311 14 48 chr6 116263737 116263758 -33253279 - ID_B1 SINE B4 -65 158 61 5 1472 22 0 0 0 chr6 116265101 116265123 -33251914 + AT_rich Low_complexity Low_complexity 1 22 0 5 1472 510 163 158 31 chr6 116265202 116265329 -33251708 - ID_B1 SINE B4 0 224 82 5 1472 408 315 9 0 chr6 116266470 116266581 -33250456 - PB1D10 SINE Alu -3 114 3 5 1472 275 284 62 148 chr6 116266736 116266864 -33250173 + PB1 SINE Alu 11 127 0 5 1472 648 316 124 53 chr6 116266890 116267538 -33249499 - L1MB2 LINE L1 -156 6015 5318 5 1472 494 301 15 0 chr6 116267601 116267734 -33249303 + RSINE1 SINE B4 3 137 -28 5 1472 304 273 35 43 chr6 116267791 116267906 -33249131 - L1MB2 LINE L1 -966 5180 5067 5 1472 1920 132 124 22 chr6 116267902 116267978 -33249059 - L1_Mur3 LINE L1 -1603 4277 4207 5 1472 660 26 0 0 chr6 116267978 116268056 -33248981 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 5 1472 1193 59 0 0 chr6 116268056 116268192 -33248845 - B1_Mm SINE Alu -11 136 1 5 1472 1920 132 124 22 chr6 116268192 116268477 -33248560 - L1_Mur3 LINE L1 -1674 4206 3879 5 1472 4333 225 110 28 chr6 116268505 116269901 -33247136 - L1_Mur3 LINE L1 -2982 2898 1389 5 1472 10986 1 0 1 chr6 116269970 116271868 -33245169 - L1Md_A LINE L1 0 6582 4687 5 1472 296 253 52 40 chr6 116271861 116272034 -33245003 - L1_Mur3 LINE L1 -6459 1269 1095 5 1472 1156 67 0 0 chr6 116272042 116272176 -33244861 + B1_Mus1 SINE Alu 2 135 -13 5 1472 180 0 0 0 chr6 116272176 116272196 -33244841 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1472 992 254 113 27 chr6 116272218 116272598 -33244439 - L1_Mur3 LINE L1 -2304 3576 3158 5 1472 1294 55 0 0 chr6 116272598 116272743 -33244294 - B1_Mus2 SINE Alu -2 145 1 5 1472 992 254 113 27 chr6 116272743 116272812 -33244225 - L1_Mur3 LINE L1 -2723 3157 3088 5 1472 653 177 16 8 chr6 116272804 116272929 -33244108 - RMER1B Other Other 0 1066 941 5 1472 2212 75 0 73 chr6 116272931 116273274 -33243763 + ORR1A3 LTR MaLR 1 318 -8 5 1472 3277 153 25 10 chr6 116273289 116273810 -33243227 - RMER1B Other Other -138 928 400 5 1472 229 258 61 0 chr6 116273785 116273851 -33243186 - RMER1A Other Other -575 455 386 5 1472 363 23 0 0 chr6 116273869 116273913 -33243124 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1472 390 300 58 30 chr6 116273931 116274213 -33242824 - L1_Rod LINE L1 -4401 1446 1162 5 1472 480 249 124 27 chr6 116274400 116274586 -33242451 - L1MB2 LINE L1 -1190 4956 4753 5 1472 254 333 15 0 chr6 116274827 116274893 -33242144 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 6 1472 263 294 0 14 chr6 116276071 116276140 -33240897 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 6 1472 312 27 0 0 chr6 116276165 116276202 -33240835 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 6 1472 1277 42 0 0 chr6 116276202 116276344 -33240693 - B1_Mus2 SINE Alu -5 142 1 6 1472 700 47 66 0 chr6 116276447 116276553 -33240484 - L1Md_F2 LINE L1 -12 6570 6458 6 1472 257 51 26 0 chr6 116276834 116276873 -33240164 + (CCCTG)n Simple_repeat Simple_repeat 3 42 0 6 1472 29 0 0 0 chr6 116277178 116277207 -33239830 + AT_rich Low_complexity Low_complexity 1 29 0 6 1472 916 199 0 7 chr6 116277229 116277364 -33239673 + B1_Mm SINE Alu 1 135 -12 6 1472 204 67 0 0 chr6 116277364 116277394 -33239643 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1472 916 199 0 7 chr6 116277394 116277405 -33239632 + B1_Mm SINE Alu 136 146 -1 6 1472 25 51 0 0 chr6 116278088 116278127 -33238910 + AT_rich Low_complexity Low_complexity 1 39 0 6 1472 243 0 0 0 chr6 116278695 116278722 -33238315 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1472 633 161 104 30 chr6 116278906 116279040 -33237997 - B1_Mur1 SINE Alu -1 148 5 6 1472 599 234 27 14 chr6 116280791 116280938 -33236099 - B1F SINE Alu 0 149 1 6 1472 1165 62 0 58 chr6 116281771 116281926 -33235111 - B1_Mus2 SINE Alu -1 146 1 6 1472 403 152 173 2 chr6 116281984 116282086 -33234951 + B1_Mur4 SINE Alu 2 118 -2 6 1472 188 23 65 43 chr6 116282092 116282138 -33234899 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 6 1472 226 194 174 29 chr6 116282310 116282379 -33234658 - ID4_ SINE ID -3 80 2 6 1472 213 65 0 0 chr6 116282426 116282457 -33234580 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1472 417 53 35 0 chr6 116282457 116282514 -33234523 - B1_Mur4 SINE Alu -9 141 83 6 1472 285 296 0 24 chr6 116282765 116282848 -33234189 - PB1D7 SINE Alu -2 118 38 6 1472 444 243 92 65 chr6 116282917 116283102 -33233935 + ID_B1 SINE B4 1 190 -34 6 1472 230 292 28 0 chr6 116283316 116283388 -33233649 + MER113A DNA MER1_type 2 75 -239 6 1472 416 167 0 10 chr6 116283565 116283662 -33233375 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 1472 1272 43 0 0 chr6 116283667 116283808 -33233229 - B1_Mus1 SINE Alu -6 142 2 6 1472 21 0 0 0 chr6 116283814 116283835 -33233202 + AT_rich Low_complexity Low_complexity 1 21 0 6 1472 358 325 87 141 chr6 116284016 116284406 -33232631 - MLT1A LTR MaLR -5 369 1 6 1472 609 248 121 47 chr6 116284491 116284791 -33232246 - MLT1A-int LTR MaLR -108 1263 987 6 1472 1933 72 121 11 chr6 116284791 116285072 -33231965 + Lx LINE L1 6094 6405 -249 6 1472 2426 74 103 0 chr6 116285225 116285575 -33231462 - MTB LTR MaLR -14 386 1 6 1472 407 264 18 26 chr6 116285951 116286064 -33230973 - PB1 SINE Alu -11 116 5 6 1472 278 289 112 10 chr6 116286395 116286493 -33230544 - PB1D10 SINE Alu 0 117 10 6 1472 213 159 0 0 chr6 116288716 116288760 -33228277 + A-rich Low_complexity Low_complexity 1 44 0 6 1472 213 262 49 0 chr6 116289427 116289488 -33227549 + B4 SINE B4 76 139 -153 6 1472 3649 281 55 31 chr6 116290309 116291038 -33225999 - Lx9 LINE L1 -157 7487 6753 6 1472 1826 136 85 133 chr6 116291038 116291428 -33225609 - ORR1D1 LTR MaLR -3 371 1 6 1472 3649 281 55 31 chr6 116291428 116292001 -33225036 - Lx9 LINE L1 -892 6752 6154 6 1472 2114 209 32 142 chr6 116292001 116292499 -33224538 - L1_Rod LINE L1 -1076 4771 4298 6 1472 826 180 43 0 chr6 116292499 116292638 -33224399 + B1_Mus1 SINE Alu 4 148 0 6 1472 2114 209 32 142 chr6 116292638 116293015 -33224022 - L1_Rod LINE L1 -1550 4297 3992 6 1472 408 127 76 0 chr6 116293013 116293092 -33223945 - L1_Rod LINE L1 -3471 2376 2292 6 1472 2106 191 52 3 chr6 116293109 116293138 -33223899 - MTD LTR MaLR -14 405 376 6 1472 230 0 0 32 chr6 116293138 116293169 -33223868 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1472 2106 191 52 3 chr6 116293169 116293522 -33223515 - MTD LTR MaLR -44 375 6 6 1472 937 241 24 103 chr6 116293529 116293908 -33223129 - L1_Rod LINE L1 -3560 2287 1939 6 1472 977 225 35 5 chr6 116293908 116294109 -33222928 - B3 SINE B2 -3 213 7 6 1472 1870 243 110 16 chr6 116294113 116294961 -33222076 - L1_Rod LINE L1 -3899 1948 1025 6 1472 294 98 0 0 chr6 116294984 116295035 -33222002 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 6 1472 425 226 0 22 chr6 116295047 116295183 -33221854 + (TA)n Simple_repeat Simple_repeat 1 133 0 6 1472 231 194 0 111 chr6 116295189 116295270 -33221767 - L1_Rod LINE L1 -6616 992 921 6 1472 269 312 21 0 chr6 116295593 116295686 -33221351 + L1M4 LINE L1 5284 5378 -796 6 1472 351 0 0 0 chr6 116295686 116295725 -33221312 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1472 366 283 15 30 chr6 116295835 116295966 -33221071 + L1M4 LINE L1 5434 5562 -612 6 1472 283 258 124 29 chr6 116296930 116297065 -33219972 + L1M4 LINE L1 5603 5746 -438 6 1472 230 342 14 0 chr6 116297074 116297147 -33219890 + PB1D10 SINE Alu 44 117 0 6 1472 268 244 49 0 chr6 116297198 116297280 -33219757 - L1M5 LINE L1 -359 5765 5680 6 1472 312 317 39 0 chr6 116298084 116298188 -33218849 - MLT1J-int LTR MaLR -25 1362 1255 6 1472 199 192 164 0 chr6 116298463 116298536 -33218501 + MIR SINE MIR 111 195 -67 6 1472 22 35 0 0 chr6 116298627 116298656 -33218381 + AT_rich Low_complexity Low_complexity 1 29 0 6 1472 354 272 11 0 chr6 116298837 116298929 -33218108 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1472 331 245 192 10 chr6 116298932 116299031 -33218006 - RSINE1 SINE B4 0 165 49 6 1472 298 265 0 57 chr6 116299251 116299339 -33217698 - ID2 SINE ID 0 83 1 6 1472 249 108 0 0 chr6 116299458 116299495 -33217542 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1472 1232 70 0 0 chr6 116299498 116299641 -33217396 - B1_Mus1 SINE Alu -4 144 2 6 1472 414 0 0 0 chr6 116300407 116300453 -33216584 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1472 471 250 83 0 chr6 116300565 116300685 -33216352 - MER20 DNA MER1_type -45 174 45 6 1472 232 301 90 64 chr6 116301610 116301798 -33215239 - B3A SINE B2 -5 193 1 6 1472 681 279 67 24 chr6 116302583 116302924 -33214113 - L1MC4 LINE L1 -364 7678 7323 6 1472 579 222 77 0 chr6 116303244 116303361 -33213676 + B1_Mur1 SINE Alu 5 130 -19 6 1472 180 0 0 0 chr6 116303509 116303529 -33213508 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1472 395 222 67 57 chr6 116303680 116303785 -33213252 - PB1D10 SINE Alu -10 107 2 6 1472 321 241 77 43 chr6 116303791 116303908 -33213129 - MER82 DNA MER2_type -261 392 272 6 1472 34 24 0 0 chr6 116304058 116304099 -33212938 + AT_rich Low_complexity Low_complexity 1 41 0 6 1472 198 0 0 0 chr6 116304101 116304123 -33212914 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 6 1472 322 333 18 18 chr6 116304140 116304253 -33212784 - Lx5 LINE L1 -65 6985 6873 6 1472 1090 55 12 105 chr6 116304257 116304419 -33212618 + B1_Mm SINE Alu 1 147 0 6 1472 180 0 0 0 chr6 116304419 116304439 -33212598 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1472 5475 201 94 61 chr6 116304439 116305777 -33211260 - Lx5 LINE L1 -164 6886 5543 6 1472 229 195 0 0 chr6 116305834 116305875 -33211162 + (TTG)n Simple_repeat Simple_repeat 1 41 0 6 1472 337 311 135 12 chr6 116305919 116306238 -33210799 - L1MEe LINE L1 -4576 1432 1062 6 1472 2656 202 124 64 chr6 116306277 116307117 -33209920 - RLTR13D6 LTR ERVK -12 890 1 6 1472 1094 208 10 0 chr6 116307117 116307314 -33209723 - B3 SINE B2 -16 200 2 6 1472 656 280 25 6 chr6 116307586 116307744 -33209293 - RSINE1 SINE B4 0 165 5 6 1472 22 0 0 0 chr6 116307802 116307824 -33209213 + AT_rich Low_complexity Low_complexity 1 22 0 6 1472 322 274 26 62 chr6 116308643 116308756 -33208281 - PB1D10 SINE Alu -3 114 6 6 1472 253 164 45 0 chr6 116309871 116309938 -33207099 + (TATG)n Simple_repeat Simple_repeat 4 73 0 6 1472 372 138 0 0 chr6 116309961 116310026 -33207011 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 1472 333 359 77 65 chr6 116310053 116310300 -33206737 - B4A SINE B4 -41 251 2 6 1472 556 301 0 15 chr6 116310420 116310555 -33206482 - ID_B1 SINE B4 -90 134 2 6 1472 334 336 80 54 chr6 116310740 116311076 -33205961 - HAL1 LINE L1 -987 1520 1176 6 1472 1550 161 110 7 chr6 116311512 116311794 -33205243 - MTC LTR MaLR -7 414 104 6 1472 924 223 219 71 chr6 116311819 116312253 -33204784 - RMER4B LTR ERVK -9 576 79 6 1472 1234 215 126 43 chr6 116312257 116312655 -33204382 - MYSERV-int LTR ERVK -819 5731 5301 6 1472 525 225 4 206 chr6 116312655 116312907 -33204130 - RMER4A LTR ERVK -27 439 239 6 1472 1949 242 30 42 chr6 116312907 116313450 -33203587 - MYSERV-int LTR ERVK -1462 5088 4553 6 1472 13542 139 37 24 chr6 116313480 116316517 -33200520 - MurERV4-int LTR ERVK -109 5151 1954 6 1472 1308 47 0 7 chr6 116316558 116316707 -33200330 - B1_Mus1 SINE Alu 0 148 1 6 1472 623 155 0 0 chr6 116316711 116316808 -33200229 - MTC LTR MaLR -310 97 1 6 1472 539 116 175 5 chr6 116318261 116318392 -33198645 + L1Md_F2 LINE L1 6432 6582 0 6 1472 231 88 0 0 chr6 116319194 116319228 -33197809 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 1472 1215 36 0 7 chr6 116319230 116319368 -33197669 - B1_Mus1 SINE Alu -11 137 1 6 1472 2722 186 209 16 chr6 116319450 116320094 -33196943 - RMER1B Other Other -1 1065 353 6 1472 2128 104 55 58 chr6 116320094 116320420 -33196617 - ORR1A2 LTR MaLR 0 327 3 6 1472 2429 215 106 171 chr6 116320420 116320831 -33196206 - RMER1A Other Other -631 399 42 6 1472 1511 246 103 46 chr6 116320886 116321587 -33195450 - RMER1A Other Other -530 536 13 6 1472 198 111 0 0 chr6 116322145 116322167 -33194870 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1472 1259 55 7 0 chr6 116322167 116322313 -33194724 + B1_Mus2 SINE Alu 1 147 0 6 1472 198 111 0 0 chr6 116322313 116322326 -33194711 + (A)n Simple_repeat Simple_repeat 1 13 0 6 1472 1218 253 153 35 chr6 116322362 116322984 -33194053 - L1MB8 LINE L1 -90 6088 5394 6 1472 258 302 52 0 chr6 116323007 116323123 -33193914 - L1MB8 LINE L1 -850 5296 5175 6 1472 351 215 41 51 chr6 116323129 116323227 -33193810 - PB1D10 SINE Alu 0 117 21 6 1472 216 0 0 0 chr6 116323240 116323264 -33193773 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1472 1201 247 53 35 chr6 116323379 116323773 -33193264 - L1MB8 LINE L1 -1172 4974 4574 6 1472 305 287 91 39 chr6 116325433 116325586 -33191451 - MLT1A1 LTR MaLR 0 408 215 6 1472 400 285 80 40 chr6 116325753 116325903 -33191134 + MER58A DNA MER1_type 69 224 0 6 1472 594 0 0 0 chr6 116326030 116326096 -33190941 + (TCCC)n Simple_repeat Simple_repeat 1 66 0 6 1472 180 77 0 0 chr6 116326121 116326147 -33190890 + (CAT)n Simple_repeat Simple_repeat 3 28 0 7 1472 295 207 52 0 chr6 116326158 116326216 -33190821 - ID4_ SINE ID -11 72 12 7 1472 337 250 0 0 chr6 116326285 116326353 -33190684 - PB1D10 SINE Alu 0 117 50 7 1472 383 277 237 60 chr6 116326963 116327212 -33189825 - MTEa LTR MaLR -84 295 3 7 1472 350 323 45 13 chr6 116327270 116327427 -33189610 - RSINE1 SINE B4 -2 163 2 7 1472 846 56 0 0 chr6 116327988 116328096 -33188941 + (TCC)n Simple_repeat Simple_repeat 1 108 0 7 1472 623 163 154 0 chr6 116328374 116328497 -33188540 - B1_Mur2 SINE Alu 0 149 8 7 1472 453 247 117 26 chr6 116328497 116328528 -33188509 - ID_B1 SINE B4 -1 223 56 7 1472 288 329 91 27 chr6 116329263 116329583 -33187454 - RMER20B LTR ERVK -134 508 186 7 1472 293 123 12 58 chr6 116330426 116330512 -33186525 + CT-rich Low_complexity Low_complexity 4 85 0 7 1472 435 38 0 0 chr6 116330622 116330675 -33186362 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1472 1033 207 54 72 chr6 116330910 116331243 -33185794 - RLTR15 LTR ERVK -32 327 1 7 1472 286 225 148 12 chr6 116331373 116331454 -33185583 - MLT1A1 LTR MaLR 0 408 317 7 1472 296 260 19 29 chr6 116333314 116333417 -33183620 + RLTR42-int LTR ERVK 1156 1257 -4265 7 1472 1205 259 103 35 chr6 116333793 116334218 -33182819 - MMAR1 DNA Mariner -832 454 1 7 1472 245 244 0 0 chr6 116334444 116334489 -33182548 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1472 744 186 0 0 chr6 116334733 116334846 -33182191 - B3 SINE B2 -103 113 1 7 1472 681 222 22 7 chr6 116334867 116335003 -33182034 - B1_Mur2 SINE Alu -1 148 11 7 1472 970 66 0 0 chr6 116335038 116335159 -33181878 + B1_Mus1 SINE Alu 22 142 -6 7 1472 261 263 55 87 chr6 116335040 116335223 -33181814 - YREP_Mm Unknown Unknown -1518 294 118 7 1472 226 143 0 23 chr6 116336200 116336243 -33180794 + C-rich Low_complexity Low_complexity 6 47 0 7 1472 201 212 14 70 chr6 116336770 116336841 -33180196 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 7 1472 466 230 14 3 chr6 116337028 116337128 -33179909 - PB1D10 SINE Alu -7 110 12 7 1472 21 0 0 0 chr6 116337301 116337322 -33179715 + AT_rich Low_complexity Low_complexity 1 21 0 7 1472 6201 48 1 16 chr6 116337372 116338141 -33178896 - L1Md_F2 LINE L1 0 6582 5825 7 1472 609 228 272 0 chr6 116338207 116338369 -33178668 - B3 SINE B2 -10 206 1 7 1472 27 73 0 0 chr6 116338393 116338448 -33178589 + AT_rich Low_complexity Low_complexity 1 55 0 7 1472 207 0 0 0 chr6 116338583 116338606 -33178431 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 7 1472 457 226 18 36 chr6 116338690 116338800 -33178237 + PB1D9 SINE Alu 1 108 -12 7 1472 564 293 24 77 chr6 116338935 116339105 -33177932 + B3A SINE B2 38 198 0 7 1472 378 285 0 144 chr6 116339843 116339863 -33177174 + ID_B1 SINE B4 73 209 -15 7 1472 664 195 0 86 chr6 116339863 116340003 -33177034 + B1_Mur2 SINE Alu 7 134 -15 7 1472 192 40 0 0 chr6 116340003 116340028 -33177009 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 7 1472 1754 156 107 55 chr6 116340260 116340655 -33176382 - RMER10A LTR ERVL 0 442 34 7 1472 198 0 0 0 chr6 116340655 116340677 -33176360 + (TTG)n Simple_repeat Simple_repeat 3 24 0 7 1472 1754 156 107 55 chr6 116340677 116340701 -33176336 - RMER10A LTR ERVL -409 33 1 7 1472 1069 261 89 29 chr6 116340813 116341160 -33175877 - RMER5 LTR ERV1 -41 493 126 7 1472 499 272 69 61 chr6 116341348 116341391 -33175646 - CYRA11_Mm Unknown Y-chromosome -193 424 176 7 1472 1253 132 78 0 chr6 116341391 116341595 -33175442 + URR1B DNA MER1_type 1 220 -5 7 1472 280 266 314 11 chr6 116341599 116341774 -33175263 - MLT1B LTR MaLR -10 380 153 7 1472 1196 41 14 0 chr6 116342132 116342278 -33174759 - B1_Mus1 SINE Alu 0 148 1 7 1472 382 258 0 76 chr6 116342713 116342818 -33174219 - B4A SINE B4 0 292 196 7 1472 213 308 31 0 chr6 116342831 116342896 -33174141 - B4A SINE B4 -225 67 1 7 1472 613 167 75 102 chr6 116343181 116343368 -33173669 - MMAR1 DNA Mariner -7 1279 1098 7 1472 323 255 18 45 chr6 116343368 116343479 -33173558 + L1M2 LINE L1 4625 4732 -1411 7 1472 553 270 18 24 chr6 116343539 116343706 -33173331 + B3A SINE B2 33 198 0 7 1472 227 207 34 17 chr6 116343769 116343828 -33173209 + Lx8 LINE L1 5847 5906 -1567 7 1472 413 279 140 52 chr6 116344192 116344328 -33172709 + B1F SINE Alu 1 148 -1 7 1472 576 0 0 0 chr6 116345181 116345245 -33171792 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 1472 261 0 0 0 chr6 116345245 116345273 -33171764 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1472 780 305 76 18 chr6 116346043 116346267 -33170770 - B4A SINE B4 0 292 56 7 1472 1141 223 57 36 chr6 116346961 116347240 -33169797 - B4 SINE B4 -3 289 5 7 1472 1686 210 42 31 chr6 116348609 116348993 -33168044 - MTD LTR MaLR 0 419 32 7 1472 337 225 101 0 chr6 116349795 116349884 -33167153 + B1F1 SINE Alu 1 98 -51 7 1472 568 197 43 118 chr6 116350747 116350908 -33166129 + B1_Mur1 SINE Alu 1 149 0 7 1472 206 273 88 35 chr6 116354329 116354443 -33162594 - L2a LINE L2 -262 3164 3045 7 1472 1226 61 0 0 chr6 116354808 116354955 -33162082 - B1_Mus2 SINE Alu 0 147 1 7 1472 962 160 5 56 chr6 116354956 116355154 -33161883 - L1Md_F3 LINE L1 -5 6579 6392 7 1472 319 50 0 0 chr6 116355154 116355194 -33161843 + L1_Mus1 LINE L1 6071 6110 -457 7 1472 483 251 103 23 chr6 116359870 116360086 -33156951 + Lx7 LINE L1 5677 5911 -1097 7 1472 635 176 0 36 chr6 116361174 116361286 -33155751 + PB1D9 SINE Alu 4 111 -9 7 1472 439 182 195 41 chr6 116361361 116361556 -33155481 + L1MA5 LINE L1 6053 6277 -23 7 1472 423 0 0 0 chr6 116362193 116362240 -33154797 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1472 21 0 0 0 chr6 116364935 116364956 -33152081 + AT_rich Low_complexity Low_complexity 1 21 0 7 1472 838 144 0 76 chr6 116364956 116365114 -33151923 - B1_Mus1 SINE Alu -2 146 1 7 1472 213 314 0 28 chr6 116365744 116365816 -33151221 + MIRb SINE MIR 101 170 -98 7 1472 1042 226 161 0 chr6 116366240 116366519 -33150518 + ORR1E LTR MaLR 3 326 -33 7 1472 242 164 81 16 chr6 116366560 116366622 -33150415 - MER33 DNA MER1_type -1 323 258 7 1472 194 128 26 0 chr6 116366715 116366754 -33150283 + T-rich Low_complexity Low_complexity 2 41 0 7 1472 2215 50 32 0 chr6 116366780 116367057 -33149980 - L1_Mus1 LINE L1 0 6567 6282 7 1472 213 295 50 79 chr6 116367638 116367778 -33149259 - MIRb SINE MIR -45 223 88 7 1472 186 294 28 42 chr6 116368823 116368894 -33148143 - MIR SINE MIR -159 103 34 7 1472 231 224 0 0 chr6 116369120 116369169 -33147868 - PB1D7 SINE Alu -10 110 62 7 1472 310 233 0 0 chr6 116369597 116369657 -33147380 + U2 snRNA snRNA 1 60 -128 7 1472 222 105 0 0 chr6 116370966 116371004 -33146033 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1472 23 0 0 0 chr6 116371783 116371806 -33145231 + AT_rich Low_complexity Low_complexity 1 23 0 7 1472 303 293 12 0 chr6 116371806 116371888 -33145149 + ID2 SINE ID 1 83 0 7 1472 405 0 0 0 chr6 116373756 116373801 -33143236 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1472 587 243 110 0 chr6 116373826 116373962 -33143075 - B3A SINE B2 -47 151 1 7 1472 520 263 117 13 chr6 116374511 116374665 -33142372 - ORR1D2 LTR MaLR -196 174 5 7 1472 2988 182 56 34 chr6 116374667 116375293 -33141744 - ORR1D2-int LTR MaLR -1 1369 730 7 1472 348 215 15 0 chr6 116375283 116375348 -33141689 - ORR1D2 LTR MaLR -302 68 3 7 1472 236 309 60 52 chr6 116375778 116375894 -33141143 + MIR SINE MIR 30 146 -116 7 1472 2123 151 32 41 chr6 116375894 116376285 -33140752 + ORR1C2 LTR MaLR 18 384 0 7 1472 394 239 20 61 chr6 116378225 116378323 -33138714 + RMER5 LTR ERV1 10 103 -431 7 1472 4238 97 39 104 chr6 116378983 116379787 -33137250 + RMER17A LTR ERVK 1 751 0 7 1472 34 0 0 0 chr6 116379798 116379832 -33137205 + AT_rich Low_complexity Low_complexity 1 34 0 7 1472 265 214 36 125 chr6 116379914 116380026 -33137011 + MT2B LTR ERVL 162 263 -338 7 1472 786 158 38 0 chr6 116379931 116380064 -33136973 + B1_Mur1 SINE Alu 12 149 0 7 1472 372 241 43 43 chr6 116380804 116380921 -33136116 - RSINE1 SINE B4 -47 118 2 7 1472 180 0 0 0 chr6 116381168 116381188 -33135849 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 7 1472 4063 291 48 31 chr6 116381850 116382779 -33134258 - Lx7 LINE L1 -371 7325 6398 7 1472 2956 6 0 0 chr6 116382779 116383101 -33133936 + RLTRETN_Mm LTR ERVK 1 322 0 7 1472 4063 291 48 31 chr6 116383101 116383596 -33133441 - Lx7 LINE L1 -1299 6397 5876 7 1472 11244 73 4 3 chr6 116383599 116385707 -33131330 + L1VL2 LINE L1 334 2443 -1172 7 1472 3808 255 81 34 chr6 116386571 116387763 -33129274 + Lx9 LINE L1 6382 7629 -15 7 1472 27 29 0 0 chr6 116387777 116387811 -33129226 + AT_rich Low_complexity Low_complexity 1 34 0 7 1472 791 324 47 106 chr6 116388229 116388778 -33128259 + RMER5 LTR ERV1 1 517 -17 7 1472 186 231 0 0 chr6 116390365 116390430 -33126607 + CT-rich Low_complexity Low_complexity 2 66 0 7 1472 304 244 45 23 chr6 116390540 116390628 -33126409 - PB1 SINE Alu -36 91 2 7 1472 507 213 9 0 chr6 116390780 116390888 -33126149 + MTD LTR MaLR 310 418 -1 7 1472 214 304 18 0 chr6 116390989 116391045 -33125992 - ID4 SINE ID -25 58 2 7 1472 271 278 91 19 chr6 116391077 116391231 -33125806 - L1M4 LINE L1 -535 5639 5475 7 1472 505 305 81 0 chr6 116391221 116391519 -33125518 - L1M4 LINE L1 -842 5304 4983 7 1472 359 268 52 24 chr6 116391524 116391734 -33125303 - L1MB8 LINE L1 -2 6176 5961 7 1473 269 26 26 0 chr6 116392028 116392066 -33124971 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1473 1214 48 0 0 chr6 116392074 116392219 -33124818 - B1_Mm SINE Alu 0 147 3 7 1473 1169 267 42 55 chr6 116392251 116392631 -33124406 + MTEa LTR MaLR 3 377 -2 8 1473 225 0 0 0 chr6 116392699 116392724 -33124313 + (TC)n Simple_repeat Simple_repeat 2 26 0 8 1473 275 279 0 0 chr6 116392724 116392785 -33124252 - RSINE1 SINE B4 -15 150 90 8 1473 525 223 7 35 chr6 116392795 116392939 -33124098 + L1MB8 LINE L1 5820 5959 -219 8 1473 574 183 52 0 chr6 116393067 116393182 -33123855 - MTEa LTR MaLR -258 121 1 8 1473 618 270 37 31 chr6 116393192 116393383 -33123654 - MTEa-int LTR MaLR -8 1572 1381 8 1473 1580 278 7 7 chr6 116393378 116393784 -33123253 - MTEa-int LTR MaLR -1130 450 45 8 1473 292 286 26 0 chr6 116393785 116393862 -33123175 + RSINE1 SINE B4 3 81 -84 8 1473 260 163 96 26 chr6 116393865 116393969 -33123068 - L1MB8 LINE L1 -379 5795 5682 7 1473 600 290 135 29 chr6 116393989 116394330 -33122707 - MTEa LTR MaLR 0 379 3 8 1473 682 285 110 85 chr6 116394330 116394669 -33122368 - L1MB8 LINE L1 -510 5674 5305 7 1473 3317 231 10 9 chr6 116394669 116395343 -33121694 + Lx5 LINE L1 6371 7045 -5 8 1473 682 196 124 168 chr6 116395343 116395452 -33121585 - L1MB8 LINE L1 -880 5304 5198 7 1473 815 284 10 0 chr6 116395478 116395675 -33121362 - B4 SINE B4 -5 287 89 8 1473 456 67 0 0 chr6 116395677 116395737 -33121300 + (TG)n Simple_repeat Simple_repeat 1 60 0 8 1473 1052 272 22 7 chr6 116395739 116396009 -33121028 - B4A SINE B4 -18 274 1 8 1473 2532 284 121 40 chr6 116396107 116397741 -33119296 - L1MB8 LINE L1 -947 5199 3435 7 1473 275 286 0 42 chr6 116397779 116397874 -33119163 - RSINE1 SINE B4 0 165 75 8 1473 550 250 57 0 chr6 116398591 116398731 -33118306 - B1F SINE Alu -1 148 1 8 1473 188 329 190 14 chr6 116399007 116399149 -33117888 + MIRb SINE MIR 49 215 -53 8 1473 192 182 0 0 chr6 116399450 116399494 -33117543 + (TACTG)n Simple_repeat Simple_repeat 2 45 0 8 1473 3244 146 48 26 chr6 116400286 116400904 -33116133 + RMER12 LTR ERVK 1 632 -690 8 1473 543 137 10 40 chr6 116400928 116401027 -33116010 + RMER12 LTR ERVK 1227 1322 0 8 1473 253 265 0 183 chr6 116401222 116401270 -33115767 + MLT1G LTR MaLR 165 208 -347 8 1473 2256 50 0 21 chr6 116401270 116401557 -33115480 + L1_Mus1 LINE L1 6286 6566 -1 8 1473 260 233 0 54 chr6 116401557 116401628 -33115409 + MLT1G LTR MaLR 209 262 -293 8 1473 1460 15 0 12 chr6 116402578 116402987 -33114050 + (TTC)n Simple_repeat Simple_repeat 1 404 0 8 1473 524 132 0 52 chr6 116402987 116403123 -33113914 + CT-rich Low_complexity Low_complexity 2 130 0 8 1473 319 253 0 81 chr6 116403547 116403633 -33113404 + PB1D10 SINE Alu 37 115 -2 8 1473 383 304 135 20 chr6 116404522 116404767 -33112270 + MER34 LTR ERV1 220 492 -50 8 1473 733 273 114 9 chr6 116404812 116405145 -33111892 - L1MA5 LINE L1 -1 6299 5932 8 1473 259 205 148 37 chr6 116405255 116405336 -33111701 + L1M3 LINE L1 5725 5814 -498 8 1473 423 0 0 0 chr6 116405356 116405403 -33111634 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1473 954 293 11 15 chr6 116405403 116405670 -33111367 - B4 SINE B4 -23 269 4 8 1473 935 138 0 14 chr6 116406237 116406384 -33110653 + B1_Mur4 SINE Alu 1 145 -5 8 1473 189 107 0 0 chr6 116406387 116406415 -33110622 + (CAAAC)n Simple_repeat Simple_repeat 3 30 0 8 1473 300 53 0 0 chr6 116406416 116406454 -33110583 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 8 1473 239 267 13 0 chr6 116409750 116409825 -33107212 - MADE2 DNA Mariner -4 76 1 8 1473 194 302 0 0 chr6 116412508 116412561 -33104476 + L2c LINE L2 3272 3324 -63 8 1473 2795 221 74 5 chr6 116412944 116413513 -33103524 + Lx6 LINE L1 6849 7456 -4 8 1473 4570 269 31 27 chr6 116413557 116413715 -33103322 + Lx7 LINE L1 6076 6236 -1460 8 1473 354 23 0 0 chr6 116413715 116413758 -33103279 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1473 4570 269 31 27 chr6 116413758 116414886 -33102151 + Lx7 LINE L1 6237 7367 -329 8 1473 272 247 82 0 chr6 116414908 116414993 -33102044 + Lx7 LINE L1 7605 7696 0 8 1473 3377 8 3 0 chr6 116416172 116416548 -33100489 + L1Md_A LINE L1 6206 6582 0 8 1473 282 265 0 38 chr6 116417216 116417322 -33099715 - Lx9 LINE L1 -1364 6280 6179 8 1473 3471 168 125 20 chr6 116417338 116417956 -33099081 + Lx9 LINE L1 6833 7475 -169 8 1473 450 0 0 0 chr6 116417956 116418006 -33099031 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1473 3471 168 125 20 chr6 116418006 116418121 -33098916 + Lx9 LINE L1 7476 7642 -2 8 1473 2121 125 92 24 chr6 116418462 116418900 -33098137 + RLTR20A2 LTR ERVK 1 578 0 8 1473 12403 165 60 8 chr6 116418942 116421172 -33095865 + Lx5 LINE L1 3435 5791 -89 8 1473 1163 111 67 0 chr6 116421172 116421352 -33095685 + B2_Mm2 SINE B2 1 192 -3 8 1473 12403 149 44 12 chr6 116421352 116422076 -33094961 + Lx5 LINE L1 5792 6552 -498 8 1473 1792 346 42 6 chr6 116422093 116422800 -33094237 - Lx8 LINE L1 -143 7330 6598 8 1473 225 262 15 15 chr6 116422803 116422869 -33094168 + L1M2 LINE L1 4836 4901 -1242 8 1473 922 276 29 26 chr6 116423439 116423751 -33093286 + L1_Rod LINE L1 5366 5678 -169 8 1473 2427 118 115 7 chr6 116423754 116424179 -33092858 - RLTR13D3 LTR ERVK 0 983 513 8 1473 38661 30 1 0 chr6 116424186 116431048 -33085989 - L1Md_T LINE L1 0 6585 1 8 1473 3413 103 42 8 chr6 116431048 116431577 -33085460 - RLTR13D3 LTR ERVK -567 547 1 8 1473 2245 154 31 0 chr6 116431607 116432022 -33085015 + L1_Mur3 LINE L1 3617 4044 -1836 8 1473 1513 116 0 110 chr6 116432022 116432312 -33084725 - RLTR22_Mur LTR ERVK 0 1848 1591 8 1473 1169 61 0 20 chr6 116432411 116432561 -33084476 + B1_Mus1 SINE Alu 2 148 0 8 1473 4793 105 33 1 chr6 116432705 116433485 -33083552 - RLTR22_Mur LTR ERVK -1043 805 1 8 1473 6331 142 24 14 chr6 116433485 116434586 -33082451 + L1_Mur3 LINE L1 4039 5149 -731 8 1473 1727 184 3 19 chr6 116434586 116434684 -33082353 + L1_Mur3 LINE L1 5471 5568 -312 8 1473 2413 92 0 58 chr6 116434684 116435031 -33082006 + ORR1A2 LTR MaLR 1 327 0 8 1473 1727 184 3 19 chr6 116435031 116435242 -33081795 + L1_Mur3 LINE L1 5569 5775 -105 8 1473 1843 281 148 43 chr6 116435904 116436759 -33080278 + Lx8 LINE L1 6421 7365 -108 8 1473 534 288 97 13 chr6 116436790 116437089 -33079948 + L1MA4 LINE L1 4527 4850 -1290 8 1473 553 236 0 8 chr6 116437097 116437221 -33079816 - ID_B1 SINE B4 -10 214 92 8 1473 676 203 63 0 chr6 116437231 116437374 -33079663 + L1MA4 LINE L1 4843 4994 -1149 8 1473 246 95 0 0 chr6 116437656 116437698 -33079339 + (T)n Simple_repeat Simple_repeat 1 42 0 8 1473 1219 48 0 0 chr6 116437701 116437847 -33079190 - B1_Mus2 SINE Alu 0 147 2 8 1473 1406 299 59 15 chr6 116438055 116438873 -33078164 + L1MA4 LINE L1 5042 5917 -383 8 1473 5677 92 3 3 chr6 116442248 116443016 -33074021 + Lx9 LINE L1 5028 5788 -1856 8 1473 266 268 0 53 chr6 116443179 116443254 -33073783 - B4 SINE B4 -2 290 220 8 1473 360 0 0 0 chr6 116446023 116446063 -33070974 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1473 718 234 50 10 chr6 116447451 116447650 -33069387 + MTEa LTR MaLR 173 379 0 8 1473 21 0 0 0 chr6 116448010 116448031 -33069006 + AT_rich Low_complexity Low_complexity 1 21 0 8 1473 8633 27 1 0 chr6 116448366 116449412 -33067625 - L1Md_A LINE L1 0 6582 5536 8 1473 2938 70 53 13 chr6 116449541 116449920 -33067117 + L1Md_F2 LINE L1 6185 6578 -4 8 1473 541 204 0 0 chr6 116450540 116450628 -33066409 + B1_Mur3 SINE Alu 2 89 -60 8 1473 1993 301 134 36 chr6 116450740 116451249 -33065788 - Lx8 LINE L1 -130 7343 6815 8 1473 1868 164 65 86 chr6 116451249 116451635 -33065402 + ORR1C1 LTR MaLR 1 378 0 8 1473 1993 301 134 36 chr6 116451635 116451942 -33065095 - Lx8 LINE L1 -659 6814 6428 8 1473 3181 27 0 88 chr6 116451942 116452342 -33064695 + RLTR10B2 LTR ERVK 1 365 0 8 1473 1993 301 134 36 chr6 116452342 116452528 -33064509 - Lx8 LINE L1 -1046 6427 6241 8 1473 523 71 0 0 chr6 116452531 116452601 -33064436 + MusHAL1 LINE L1 226 295 -2417 8 1473 2531 138 10 32 chr6 116452601 116453013 -33064024 - RLTR9D LTR ERVK 0 403 1 8 1473 417 125 27 14 chr6 116453014 116453087 -33063950 - ETnERV2-int LTR ERVK -2 7404 7331 8 1473 4090 186 39 38 chr6 116453302 116455350 -33061687 - ETnERV2-int LTR ERVK -3318 4088 2310 8 1473 2957 123 15 48 chr6 116455578 116456258 -33060779 - ETnERV2-int LTR ERVK -4283 3123 2640 8 1473 897 156 39 13 chr6 116457058 116457214 -33059823 - ETnERV2-int LTR ERVK -4751 2655 2496 8 1473 4003 155 116 33 chr6 116457234 116458172 -33058865 - RLTR45-int LTR ERVK -4141 3103 2088 8 1473 440 221 35 122 chr6 116458181 116458532 -33058505 - MMETn-int LTR ERVK -2927 387 2 8 1473 2396 138 32 25 chr6 116458534 116458934 -33058103 - RLTR9D LTR ERVK 0 403 1 8 1473 4469 118 0 0 chr6 116458934 116459613 -33057424 + L1_Mm LINE L1 1492 2170 -3713 8 1473 681 277 34 6 chr6 116459611 116459789 -33057248 - Lx9 LINE L1 -908 6736 6554 8 1473 231 125 21 0 chr6 116459984 116460032 -33057005 - MusHAL1 LINE L1 -1788 924 876 8 1473 1403 148 91 138 chr6 116460051 116460413 -33056624 + ORR1D1 LTR MaLR 1 345 -29 8 1473 8348 40 3 3 chr6 116460415 116461700 -33055337 - L1Md_F2 LINE L1 -12 6570 5286 8 1473 928 237 55 9 chr6 116461745 116461962 -33055075 + Lx9 LINE L1 6770 6996 -648 8 1473 1153 207 9 18 chr6 116461991 116462208 -33054829 + MTD LTR MaLR 4 218 -201 8 1473 1575 152 0 4 chr6 116462218 116462463 -33054574 + L1_Mm LINE L1 5528 5771 -112 8 1473 814 298 99 40 chr6 116462558 116463061 -33053976 + MT2A LTR ERVL 1 533 0 8 1473 402 276 71 0 chr6 116463119 116463217 -33053820 - B1F1 SINE Alu -32 117 13 8 1473 226 338 0 26 chr6 116463149 116463225 -33053812 - MT2B2 LTR ERVL -342 242 169 8 1473 582 308 55 36 chr6 116464409 116464628 -33052409 - B4A SINE B4 -12 280 58 8 1473 689 289 59 10 chr6 116464872 116465075 -33051962 - B3 SINE B2 -3 213 1 8 1473 1089 131 0 0 chr6 116465105 116465281 -33051756 + (TTTCC)n Simple_repeat Simple_repeat 5 180 0 8 1473 1152 222 146 32 chr6 116467660 116468036 -33049001 + MTD LTR MaLR 1 419 0 8 1473 417 20 0 0 chr6 116468307 116468357 -33048680 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1473 317 318 53 0 chr6 116468548 116468699 -33048338 + L1M5 LINE L1 2673 2831 -3315 8 1473 248 0 0 30 chr6 116469005 116469038 -33047999 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1473 234 62 0 0 chr6 116469052 116469084 -33047953 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1473 400 255 11 11 chr6 116469344 116469361 -33047676 + B4 SINE B4 70 164 -128 8 1473 576 103 0 0 chr6 116469361 116469439 -33047598 + B1_Mur3 SINE Alu 2 79 -70 8 1473 1166 89 6 0 chr6 116469449 116469618 -33047419 + (GAGAA)n Simple_repeat Simple_repeat 2 171 0 8 1473 1319 332 72 31 chr6 116469695 116470201 -33046836 - Lx8 LINE L1 -148 7325 6815 8 1473 1654 165 106 106 chr6 116470201 116470568 -33046469 + ORR1B2 LTR MaLR 1 367 0 8 1473 1319 336 95 38 chr6 116470568 116471131 -33045906 - Lx8 LINE L1 -659 6814 6175 8 1473 8015 143 20 42 chr6 116471241 116472469 -33044568 - Lx3B LINE L1 0 6973 5776 8 1473 1167 75 7 0 chr6 116472469 116472615 -33044422 - B1_Mm SINE Alu 0 147 1 8 1473 8015 133 5 88 chr6 116472615 116472891 -33044146 - Lx3B LINE L1 -108 5778 5503 8 1473 1770 181 114 25 chr6 116472891 116473287 -33043750 + RMER19B LTR ERVK 460 890 -12 8 1473 411 120 66 13 chr6 116473301 116473377 -33043660 - MTD-int LTR MaLR -1171 87 8 8 1473 1147 202 142 4 chr6 116473384 116473652 -33043385 - MTD LTR MaLR 0 419 115 8 1473 6367 152 19 41 chr6 116473657 116475505 -33041532 + L1Md_F LINE L1 298 2072 -1745 8 1473 693 266 33 17 chr6 116475502 116475682 -33041355 - Lx9 LINE L1 -908 6736 6554 8 1473 231 125 21 0 chr6 116475877 116475925 -33041112 - MusHAL1 LINE L1 -1788 924 876 9 1473 1596 156 87 153 chr6 116475953 116476346 -33040691 + ORR1D1 LTR MaLR 5 371 -3 9 1473 286 339 18 18 chr6 116476351 116476465 -33040572 + Lx9 LINE L1 6752 6865 -779 9 1473 1194 231 103 12 chr6 116476466 116476795 -33040242 + RLTR10D LTR ERVK 1 359 0 9 1473 587 190 14 62 chr6 116476797 116476943 -33040094 + IAP-d-int LTR ERVK 3 141 -6401 9 1473 1092 286 13 13 chr6 116476967 116477353 -33039684 + IAP-d-int LTR ERVK 3148 3533 -3009 9 1473 1139 273 18 15 chr6 116477375 116477706 -33039331 + IAP-d-int LTR ERVK 4845 5176 -1366 9 1473 2451 240 3 10 chr6 116477694 116478284 -33038753 + IAP-d-int LTR ERVK 5474 6059 -483 9 1473 2011 195 21 21 chr6 116478315 116478702 -33038335 + IAP-d-int LTR ERVK 6156 6542 0 9 1473 382 85 0 0 chr6 116478702 116478761 -33038276 + RLTR10D LTR ERVK 1 59 -300 9 1473 34967 66 3 25 chr6 116478761 116482646 -33034391 - L1Md_F2 LINE L1 -1 6581 2716 9 1473 1009 33 0 0 chr6 116482646 116482768 -33034269 - B1_Mus1 SINE Alu 0 148 27 9 1473 34967 66 3 25 chr6 116482768 116485092 -33031945 - L1Md_F2 LINE L1 -1 2715 401 9 1473 1165 248 38 19 chr6 116485092 116485408 -33031629 + RLTR10D LTR ERVK 38 359 0 9 1473 515 240 79 8 chr6 116485409 116485535 -33031502 + Lx9 LINE L1 6862 6996 -648 9 1473 1214 176 10 5 chr6 116485576 116485781 -33031256 + MTD LTR MaLR 13 218 -201 9 1473 7195 88 6 20 chr6 116485782 116486845 -33030192 + L1_Mus2 LINE L1 5519 6566 0 9 1473 388 160 66 13 chr6 116486870 116486946 -33030091 - MTD-int LTR MaLR -1171 87 8 9 1473 1367 203 182 3 chr6 116486953 116487299 -33029738 - MTD LTR MaLR 0 419 12 9 1473 795 324 89 39 chr6 116487405 116487913 -33029124 + MT2A LTR ERVL 1 533 0 9 1473 441 318 1 2 chr6 116487972 116488089 -33028948 - B1F1 SINE Alu -32 117 1 9 1473 584 314 45 32 chr6 116489270 116489490 -33027547 - B4A SINE B4 -12 280 58 9 1473 562 316 99 5 chr6 116489739 116489930 -33027107 - B3 SINE B2 -7 209 1 9 1473 962 226 104 58 chr6 116492357 116492704 -33024333 + MTD LTR MaLR 57 419 0 9 1473 260 301 78 7 chr6 116493206 116493360 -33023677 + L1M5 LINE L1 2673 2837 -3309 9 1473 376 255 74 27 chr6 116493719 116493868 -33023169 + L1MC LINE L1 3292 3447 -2699 9 1473 397 247 11 0 chr6 116493916 116494005 -33023032 - L1_Mur3 LINE L1 -4066 1814 1725 9 1473 753 290 29 69 chr6 116494005 116494718 -33022319 - L1_Mur3 LINE L1 -4266 1614 923 9 1473 4616 230 47 20 chr6 116495255 116496585 -33020452 - L1_Rod LINE L1 -3318 2529 1162 9 1473 442 338 61 0 chr6 116496823 116496971 -33020066 - RSINE1 SINE B4 0 165 9 9 1473 246 272 80 20 chr6 116496971 116497121 -33019916 + L1M3 LINE L1 4043 4201 -1939 9 1473 1086 112 19 0 chr6 116497158 116497318 -33019719 + Lx2A1 LINE L1 6246 6408 -600 9 1473 652 141 43 8 chr6 116497548 116497807 -33019230 + GA-rich Low_complexity Low_complexity 1 268 0 9 1473 210 208 125 0 chr6 116497810 116497858 -33019179 + B1F SINE Alu 91 144 -5 9 1473 288 222 48 18 chr6 116497889 116498054 -33018983 + GA-rich Low_complexity Low_complexity 3 172 0 9 1473 249 268 6 90 chr6 116498686 116498842 -33018195 - RMER10B LTR ERVL -88 310 168 9 1473 3334 60 4 0 chr6 116498842 116499295 -33017742 + MusHAL1 LINE L1 445 899 -1813 9 1473 3000 110 43 36 chr6 116499337 116499907 -33017130 + Lx2 LINE L1 5503 6079 -918 9 1473 777 32 0 0 chr6 116499907 116500000 -33017037 + MT2_Mm LTR ERVL 1 93 -400 9 1473 2743 65 27 11 chr6 116500002 116500376 -33016661 + MT2C_Mm LTR ERVL 96 475 0 1 1473 3158 128 23 31 chr6 116500376 116500948 -33016089 + Lx2 LINE L1 6077 6643 -354 2 1473 1231 129 35 0 chr6 116500948 116501150 -33015887 + Lx2 LINE L1 6775 6983 -14 2 1473 36 23 0 0 chr6 116502655 116502698 -33014339 + AT_rich Low_complexity Low_complexity 1 43 0 3 1473 362 120 0 62 chr6 116502702 116502782 -33014255 + L1Md_F2 LINE L1 6496 6570 -12 4 1473 225 0 0 0 chr6 116502801 116502826 -33014211 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 1473 417 69 0 0 chr6 116502938 116502996 -33014041 + L1_Mm LINE L1 5157 5214 -669 6 1473 687 222 86 89 chr6 116502993 116503250 -33013787 + Lx6 LINE L1 7179 7434 -26 7 1473 868 217 38 19 chr6 116503772 116503983 -33013054 + B3 SINE B2 1 215 -1 8 1473 351 0 0 0 chr6 116504873 116504912 -33012125 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 9 1473 1292 255 28 6 chr6 116505959 116506251 -33010786 - Lx6 LINE L1 -15 7445 7152 1 1473 351 0 0 0 chr6 116506251 116506290 -33010747 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1 1473 1292 255 28 6 chr6 116506290 116506356 -33010681 - Lx6 LINE L1 -309 7151 7080 1 1473 241 317 95 24 chr6 116507420 116507546 -33009491 - L3 LINE CR1 -25 4464 4330 1 1473 459 335 28 0 chr6 116507782 116507958 -33009079 + MER2 DNA MER2_type 159 339 -6 1 1473 333 0 0 0 chr6 116508674 116508711 -33008326 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1473 636 14 0 0 chr6 116508711 116508783 -33008254 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1473 26 50 0 0 chr6 116508930 116508970 -33008067 + AT_rich Low_complexity Low_complexity 1 40 0 1 1473 307 319 14 0 chr6 116509349 116509421 -33007616 + RSINE1 SINE B4 4 76 -89 1 1473 24 0 0 0 chr6 116509490 116509514 -33007523 + AT_rich Low_complexity Low_complexity 1 24 0 1 1473 577 302 14 0 chr6 116509536 116509675 -33007362 + RSINE1 SINE B4 11 151 -14 1 1473 214 152 17 17 chr6 116509848 116509908 -33007129 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1473 688 267 65 126 chr6 116509927 116510492 -33006545 - L1MD1 LINE L1 -141 6101 5571 2 1473 356 133 62 4 chr6 116510858 116510939 -33006098 - MTD LTR MaLR -14 407 306 2 1473 1040 42 41 18 chr6 116510940 116511111 -33005926 + (TCTCC)n Simple_repeat Simple_repeat 2 176 0 2 1473 254 109 0 42 chr6 116511111 116511159 -33005878 + C-rich Low_complexity Low_complexity 5 50 0 2 1473 804 155 96 25 chr6 116511225 116511362 -33005675 - Lx7 LINE L1 0 7696 7560 2 1473 768 177 14 28 chr6 116511362 116511507 -33005530 + B1_Mur3 SINE Alu 2 144 -5 2 1473 804 155 96 25 chr6 116511507 116511567 -33005470 - Lx7 LINE L1 -137 7559 7485 2 1473 694 267 137 52 chr6 116511576 116511792 -33005245 - L1_Mur3 LINE L1 -4396 1484 1248 2 1473 207 0 0 0 chr6 116511792 116511815 -33005222 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1473 694 302 56 16 chr6 116511815 116512192 -33004845 - L1_Mur3 LINE L1 -6481 1247 851 2 1473 702 137 14 21 chr6 116512618 116512760 -33004277 + C-rich Low_complexity Low_complexity 5 145 0 2 1473 289 269 26 0 chr6 116512762 116512840 -33004197 + CT-rich Low_complexity Low_complexity 3 82 0 3 1473 9620 140 17 12 chr6 116512843 116515733 -33001304 - Lx2B LINE L1 0 7000 4091 3 1473 1978 110 20 0 chr6 116515721 116516190 -33000847 - Lx2B LINE L1 -4229 1654 1151 3 1473 8057 23 7 1 chr6 116516187 116517178 -32999859 - L1Md_F3 LINE L1 0 6584 5588 3 1473 935 51 0 0 chr6 116517182 116517300 -32999737 + L1Md_F3 LINE L1 5460 5577 -306 3 1473 1757 216 18 68 chr6 116517299 116517859 -32999178 - L1VL4 LINE L1 -5494 808 277 3 1473 3363 144 143 27 chr6 116517884 116518547 -32998490 - RMER19B LTR ERVK -12 890 151 3 1473 1216 119 11 0 chr6 116518558 116518734 -32998303 + B2_Mm1t SINE B2 2 179 -14 3 1473 345 127 0 18 chr6 116518770 116518826 -32998211 + B2_Mm2 SINE B2 47 101 -94 3 1473 240 35 0 0 chr6 116519539 116519568 -32997469 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 3 1473 189 121 0 0 chr6 116519702 116519735 -32997302 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1473 255 286 0 0 chr6 116519969 116520025 -32997012 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1473 1356 265 27 67 chr6 116521502 116522024 -32995013 - Lx8 LINE L1 -7 7466 6966 4 1473 757 259 69 28 chr6 116522071 116522432 -32994605 - L1MA6 LINE L1 -361 5939 5564 4 184 36297 30 0 0 chr6 116522486 116529033 -32988004 - L1Md_T LINE L1 0 6585 14 4 1474 186 43 0 0 chr6 116529033 116529056 -32987981 + (TTTC)n Simple_repeat Simple_repeat 3 25 0 4 1474 290 215 0 12 chr6 116529052 116529132 -32987905 + CT-rich Low_complexity Low_complexity 3 81 0 4 1474 1218 102 0 0 chr6 116529134 116529301 -32987736 - B2_Mm2 SINE B2 -28 167 1 4 1474 180 0 0 0 chr6 116529309 116529329 -32987708 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1474 992 264 72 54 chr6 116529414 116529914 -32987123 - L1MA6 LINE L1 -1142 5001 4493 4 1474 1078 135 16 11 chr6 116529917 116530099 -32986938 + MT2B LTR ERVL 297 460 -141 4 1474 531 196 0 0 chr6 116530115 116530222 -32986815 - L1_Rod LINE L1 -6505 667 561 4 1474 432 37 0 0 chr6 116530251 116530305 -32986732 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1474 749 172 13 76 chr6 116531654 116531811 -32985226 + B1_Mus1 SINE Alu 2 148 0 5 1474 493 325 0 8 chr6 116533408 116533532 -32983505 - RSINE1 SINE B4 -28 137 15 5 1474 944 174 9 3 chr6 116535006 116535186 -32981851 - ORR1B1 LTR MaLR 0 394 182 5 1474 1207 48 0 0 chr6 116535415 116535562 -32981475 + B1_Mus1 SINE Alu 2 148 0 5 1474 192 97 0 0 chr6 116535564 116535595 -32981442 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1474 1142 95 6 0 chr6 116535601 116535780 -32981257 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1474 855 319 71 30 chr6 116535872 116536308 -32980729 + Lx8 LINE L1 6405 6858 -615 5 1474 1177 277 34 112 chr6 116536586 116536994 -32980043 - Lx9 LINE L1 -175 7469 7116 5 1474 4651 86 19 0 chr6 116536994 116537624 -32979413 - L1_Mus3 LINE L1 -3 6635 5994 5 1474 1177 277 34 112 chr6 116537624 116537837 -32979200 - Lx9 LINE L1 -529 7115 6897 5 1474 5337 128 23 19 chr6 116537840 116537996 -32979041 + L1_Mur3 LINE L1 1899 2057 -3823 5 1474 321 26 0 0 chr6 116537996 116538034 -32979003 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1474 5337 146 68 22 chr6 116538034 116539148 -32977889 + L1_Mur3 LINE L1 2050 3514 -2363 5 1474 2942 143 134 83 chr6 116539148 116539729 -32977308 - RMER19C LTR ERVK 0 611 1 6 1474 4347 206 226 31 chr6 116539729 116540152 -32976885 + L1_Mur3 LINE L1 3515 3921 -1956 5 1474 383 242 99 61 chr6 116540160 116540331 -32976706 - RLTR20B3 LTR ERVK -141 436 235 6 1474 705 115 69 0 chr6 116540352 116540482 -32976555 + L1_Mur3 LINE L1 3949 4087 -1793 6 1474 778 264 33 33 chr6 116540483 116540796 -32976241 + RLTR20B3 LTR ERVK 205 521 -56 6 1474 2342 133 19 0 chr6 116540810 116541222 -32975815 + L1_Mur3 LINE L1 4185 4604 -1276 6 1474 5341 112 14 9 chr6 116541220 116542090 -32974947 - L1_Mm LINE L1 -2085 3798 2925 6 1474 2151 84 14 9 chr6 116542057 116542405 -32974632 - MusHAL1 LINE L1 -2217 495 146 6 1474 11950 41 16 12 chr6 116542422 116544753 -32972284 - L1Md_F3 LINE L1 0 6584 4264 6 1474 4258 140 88 47 chr6 116544757 116545654 -32971383 - L1VL1 LINE L1 -5294 1128 195 6 1474 339 221 26 0 chr6 116545655 116545732 -32971305 - Lx7 LINE L1 -472 7224 7146 7 1474 3351 206 60 34 chr6 116545742 116547155 -32969882 + L1_Rod LINE L1 809 2234 -3613 7 1474 3113 233 91 159 chr6 116547595 116548243 -32968794 + L1_Rod LINE L1 2224 2901 -2946 7 1474 702 157 9 0 chr6 116548243 116548358 -32968679 + PB1D9 SINE Alu 5 120 0 7 1474 3113 233 91 159 chr6 116548358 116548487 -32968550 + L1_Rod LINE L1 2902 2982 -2865 7 1474 1213 89 0 0 chr6 116548487 116548645 -32968392 + B2_Mm2 SINE B2 1 158 -37 7 1474 312 27 0 0 chr6 116548645 116548682 -32968355 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 7 1474 3113 233 91 159 chr6 116548682 116548842 -32968195 + L1_Rod LINE L1 2983 3122 -2725 7 1474 420 20 0 0 chr6 116548842 116548891 -32968146 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 1474 3113 233 91 159 chr6 116548891 116549198 -32967839 + L1_Rod LINE L1 3123 3443 -2404 7 1474 207 0 0 0 chr6 116549198 116549221 -32967816 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1474 3113 233 91 159 chr6 116549221 116549809 -32967228 + L1_Rod LINE L1 3444 4080 -1767 7 1474 1329 116 9 5 chr6 116549825 116550041 -32966996 - Lx LINE L1 -7 6647 6431 7 1474 3901 84 22 0 chr6 116550041 116550650 -32966387 - Lx LINE L1 -525 6129 5510 7 1474 3240 213 18 84 chr6 116550647 116551689 -32965348 + L1_Mur2 LINE L1 3610 4582 -1304 7 1474 805 189 19 0 chr6 116551688 116551847 -32965190 - Lx9 LINE L1 -468 7176 7015 7 1474 315 0 0 0 chr6 116552049 116552084 -32964953 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1474 3197 288 9 30 chr6 116552355 116553403 -32963634 + Lx9 LINE L1 6447 7473 -171 8 1474 234 0 0 0 chr6 116553404 116553430 -32963607 + (TC)n Simple_repeat Simple_repeat 1 26 0 8 1474 348 24 0 0 chr6 116553430 116553470 -32963567 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1474 28 0 0 0 chr6 116553556 116553584 -32963453 + AT_rich Low_complexity Low_complexity 1 28 0 8 1474 1708 227 40 45 chr6 116553650 116554047 -32962990 - MTD LTR MaLR -13 406 12 8 1474 871 290 30 45 chr6 116554153 116554557 -32962480 + Lx8 LINE L1 6009 6406 -1067 8 1474 695 190 8 0 chr6 116554559 116554680 -32962357 - ORR1C2 LTR MaLR 0 384 263 8 1474 2532 236 49 52 chr6 116554685 116555566 -32961471 - MYSERV16_I-int LTR ERVK -1070 1256 379 8 1474 851 155 63 6 chr6 116555596 116555771 -32961266 - Lx3B LINE L1 -5 6968 6784 8 1474 3393 64 8 8 chr6 116555771 116556262 -32960775 + L1_Mur1 LINE L1 4767 5257 -629 9 1474 446 199 25 99 chr6 116556264 116556387 -32960650 - MYSERV16_I-int LTR ERVK -1933 393 281 8 1474 1411 82 16 0 chr6 116556387 116556570 -32960467 + B2_Mm2 SINE B2 1 186 -9 9 1474 446 199 25 99 chr6 116556570 116556608 -32960429 - MYSERV16_I-int LTR ERVK -2046 280 244 8 1474 228 67 0 0 chr6 116556616 116556646 -32960391 + (TTA)n Simple_repeat Simple_repeat 1 30 0 9 1474 9936 105 14 10 chr6 116556646 116558215 -32958822 - Lx2A1 LINE L1 -15 6993 5419 7 1474 3520 164 30 0 chr6 116558215 116558824 -32958213 + Lx2A1 LINE L1 4801 5427 -450 7 1474 408 287 26 53 chr6 116558839 116558990 -32958047 - MYSERV-int LTR ERVK -2055 4495 4349 9 1474 296 176 0 0 chr6 116559031 116559082 -32957955 - RMER6-int LTR ERVK -475 2702 2652 9 1474 22 0 0 0 chr6 116559104 116559126 -32957911 + AT_rich Low_complexity Low_complexity 1 22 0 9 1474 828 305 143 14 chr6 116559173 116559599 -32957438 + Lx8 LINE L1 6991 7471 -2 9 1474 307 238 62 16 chr6 116559610 116559738 -32957299 + L1ME3A LINE L1 5855 5988 -185 9 1474 313 275 66 0 chr6 116559893 116559984 -32957053 + MER94 DNA AcHobo 38 134 0 9 1474 183 204 0 0 chr6 116560386 116560430 -32956607 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 9 1474 588 213 0 2 chr6 116560475 116560591 -32956446 + B3 SINE B2 1 114 -81 1 1474 266 150 12 101 chr6 116560642 116560748 -32956289 + L1M4 LINE L1 4455 4548 -1598 1 1474 792 245 26 50 chr6 116560766 116561111 -32955926 + L1_Mur3 LINE L1 2890 3222 -2658 1 1474 1018 181 4 53 chr6 116561106 116561333 -32955704 + L1_Mur3 LINE L1 3694 3909 -1971 1 1474 1789 192 51 115 chr6 116561350 116561879 -32955158 + RLTR25B LTR ERVK 534 1028 0 1 1474 2906 220 17 50 chr6 116561886 116562606 -32954431 + L1_Mur3 LINE L1 4373 5075 -805 1 1474 1320 205 99 26 chr6 116562606 116562951 -32954086 - ORR1D1 LTR MaLR -4 370 1 1 1474 2906 220 17 50 chr6 116562951 116562991 -32954046 + L1_Mur3 LINE L1 5076 5108 -772 1 1474 320 226 240 18 chr6 116562988 116563159 -32953878 + Lx8 LINE L1 7253 7461 -12 1 1474 294 324 92 14 chr6 116563558 116563699 -32953338 - MER5A DNA MER1_type -11 178 27 1 1474 299 285 121 11 chr6 116564527 116564701 -32952336 + L1MD2 LINE L1 7 199 -6348 1 1474 308 248 32 75 chr6 116565263 116565376 -32951661 + PB1D10 SINE Alu 2 120 0 1 1474 4704 205 46 53 chr6 116565436 116566601 -32950436 - RMER1A Other Other -1 1029 1 1 1474 2441 155 43 51 chr6 116566601 116567071 -32949966 - RMER4A LTR ERVK 0 466 1 1 1474 1760 245 28 18 chr6 116567071 116567149 -32949888 - RMER1A Other Other -904 126 54 1 1474 2980 73 46 23 chr6 116567205 116567640 -32949397 - BGLII_A LTR ERVK 0 445 1 1 1474 929 272 90 20 chr6 116568475 116568831 -32948206 - Lx8 LINE L1 -22 7451 7071 1 1474 393 22 0 0 chr6 116568858 116568904 -32948133 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1474 396 0 0 0 chr6 116569171 116569215 -32947822 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1474 37 0 0 0 chr6 116569216 116569253 -32947784 + AT_rich Low_complexity Low_complexity 1 37 0 1 1474 3025 267 86 64 chr6 116569404 116570727 -32946310 - Lx6 LINE L1 -13 7447 5794 1 1474 648 26 0 0 chr6 116570731 116570809 -32946228 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 1 1474 1119 95 6 16 chr6 116570812 116570994 -32946043 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1474 2977 178 39 37 chr6 116570994 116571555 -32945482 - Lx5 LINE L1 -12 7038 6477 1 1474 350 222 36 24 chr6 116572563 116572646 -32944391 - Lx2A LINE L1 -1226 5782 5699 1 1474 452 274 77 0 chr6 116572675 116572792 -32944245 - RSINE1 SINE B4 -28 137 12 1 1474 227 305 69 59 chr6 116573893 116573994 -32943043 + PB1D10 SINE Alu 2 103 -14 1 1474 1173 82 0 0 chr6 116574215 116574362 -32942675 + B1_Mus1 SINE Alu 2 148 0 1 1474 204 67 0 0 chr6 116574363 116574393 -32942644 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1474 180 0 0 0 chr6 116574395 116574415 -32942622 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1474 21 0 0 0 chr6 116576183 116576204 -32940833 + AT_rich Low_complexity Low_complexity 1 21 0 1 1474 286 308 15 15 chr6 116576525 116576670 -32940367 - MMSAT4 Satellite Satellite -77 145 1 1 1474 1337 256 144 22 chr6 116579355 116579819 -32937218 + RMER5 LTR ERV1 13 533 -1 1 1474 1484 271 52 31 chr6 116580028 116580508 -32936529 + RMER5 LTR ERV1 3 492 -42 1 1474 205 261 53 64 chr6 116580599 116580693 -32936344 + L2b LINE L2 2479 2571 -848 1 1474 393 22 0 0 chr6 116580842 116580888 -32936149 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1474 1745 228 14 42 chr6 116581144 116581575 -32935462 + MTD LTR MaLR 1 419 0 1 1474 387 321 77 24 chr6 116581941 116582110 -32934927 + L2b LINE L2 2744 2921 -498 1 1474 286 330 35 0 chr6 116582079 116582194 -32934843 + L2b LINE L2 3256 3374 -1 1 1474 1266 101 11 0 chr6 116582507 116582685 -32934352 - B2_Mm2 SINE B2 -14 181 2 1 1474 964 241 172 17 chr6 116582691 116583018 -32934019 + MTD LTR MaLR 9 406 -13 1 1474 1145 154 13 43 chr6 116583616 116583846 -32933191 + URR1B DNA MER1_type 1 223 -2 1 1474 293 241 139 0 chr6 116584116 116584195 -32932842 - MIR SINE MIR -81 181 92 1 1474 225 0 0 0 chr6 116584893 116584918 -32932119 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1 1474 187 290 141 28 chr6 116586426 116586497 -32930540 + L2b LINE L2 3265 3343 -32 1 1474 187 220 0 157 chr6 116587169 116587239 -32929798 + L2 LINE L2 1316 1374 -2045 1 1474 426 39 0 0 chr6 116590426 116590478 -32926559 + (TATG)n Simple_repeat Simple_repeat 3 54 0 1 1474 905 304 96 55 chr6 116590633 116591092 -32925945 + MER34A1 LTR ERV1 102 579 -8 1 1474 301 324 52 0 chr6 116592571 116592678 -32924359 - B1F2 SINE Alu -7 120 2 1 1474 325 247 0 90 chr6 116592691 116592780 -32924257 - ID4_ SINE ID -1 82 2 1 1474 21 0 0 0 chr6 116592908 116592929 -32924108 + AT_rich Low_complexity Low_complexity 1 21 0 1 1474 722 325 25 13 chr6 116592986 116593223 -32923814 + Tigger5 DNA MER2_type 1 240 -2166 1 1474 266 345 72 33 chr6 116593380 116593533 -32923504 - MIRb SINE MIR -30 238 80 1 1474 1309 139 4 67 chr6 116593704 116593943 -32923094 - URR1B DNA MER1_type 0 225 2 1 1474 482 0 17 0 chr6 116596625 116596683 -32920354 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1 1474 587 280 103 11 chr6 116596687 116596871 -32920166 - B3 SINE B2 -15 201 1 1 1474 211 312 12 72 chr6 116596917 116597000 -32920037 - B1_Mus2 SINE Alu -69 78 1 1 1474 242 177 242 0 chr6 116597222 116597284 -32919753 + ID4 SINE ID 3 79 -4 1 1474 339 298 141 57 chr6 116599030 116599222 -32917815 - L1MB1 LINE L1 -52 6116 5909 1 1474 383 309 52 19 chr6 116601061 116601216 -32915821 - MIRb SINE MIR -69 199 40 1 1474 550 264 116 17 chr6 116601266 116601447 -32915590 - B3 SINE B2 -3 213 15 1 1474 1328 162 14 5 chr6 116602716 116602939 -32914098 - URR1B DNA MER1_type 0 225 1 1 1474 423 0 0 0 chr6 116605047 116605094 -32911943 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1474 747 246 183 37 chr6 116605103 116605398 -32911639 + RMER15 LTR ERVL 238 575 0 1 1474 519 226 38 0 chr6 116605997 116606114 -32910923 - B1F SINE Alu -16 133 13 1 1474 199 289 0 0 chr6 116606117 116606162 -32910875 - MER5A DNA MER1_type -5 184 140 1 1474 1050 139 0 3 chr6 116606162 116607381 -32909656 + (TG)n Simple_repeat Simple_repeat 1 1214 0 1 1474 267 338 101 13 chr6 116608475 116608634 -32908403 + MER102c DNA MER1_type 62 234 -97 1 1474 1723 147 57 69 chr6 116608765 116609115 -32907922 - RLTR15 LTR ERVK 0 359 14 1 1474 500 241 24 72 chr6 116611016 116611141 -32905896 + RSINE1 SINE B4 4 122 -43 1 1474 257 136 15 0 chr6 116611166 116611232 -32905805 + CT-rich Low_complexity Low_complexity 1 67 0 1 1474 617 157 0 22 chr6 116611241 116611423 -32905614 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1474 2063 161 81 17 chr6 116611996 116612355 -32904682 - MTC LTR MaLR -39 382 1 1 1474 1060 310 94 62 chr6 116613231 116613764 -32903273 - Tigger7 DNA MER2_type -1889 602 53 1 1474 284 311 142 65 chr6 116614319 116614708 -32902329 + RMER13A LTR ERVK 346 827 -33 1 1474 396 0 0 0 chr6 116614951 116614995 -32902042 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1474 311 305 126 0 chr6 116615132 116615227 -32901810 + PB1D7 SINE Alu 14 120 0 1 1474 785 203 0 20 chr6 116615394 116615545 -32901492 - B1_Mur3 SINE Alu -1 148 1 1 1474 596 311 80 14 chr6 116615874 116616266 -32900771 - L1_Mur2 LINE L1 -1725 4418 3978 1 1474 467 318 103 25 chr6 116616306 116616703 -32900334 + L1MA4 LINE L1 4530 4957 -1186 1 1474 643 263 197 24 chr6 116616836 116617258 -32899779 + L1MA4 LINE L1 5114 5670 -621 1 1474 356 206 4 0 chr6 116617340 116617431 -32899606 + L1MA4 LINE L1 5842 5934 -366 1 1474 311 229 0 0 chr6 116617446 116617507 -32899530 - B3A SINE B2 -136 62 2 1 1474 463 309 32 48 chr6 116617576 116617763 -32899274 + MLT1I LTR MaLR 226 409 -2 1 1474 322 247 11 33 chr6 116617900 116617992 -32899045 + GA-rich Low_complexity Low_complexity 3 92 0 1 1474 713 184 0 38 chr6 116617993 116618179 -32898858 + G-rich Low_complexity Low_complexity 1 179 0 1 1474 193 284 100 43 chr6 116618421 116618491 -32898546 + MIRc SINE MIR 79 152 -116 1 1474 439 286 25 138 chr6 116619558 116619582 -32897455 - B4A SINE B4 -46 246 190 1 1474 928 107 8 0 chr6 116619582 116619713 -32897324 - B1_Mur4 SINE Alu -5 145 14 1 1474 439 286 25 138 chr6 116619713 116619761 -32897276 - B4A SINE B4 -46 189 67 1 1474 231 315 105 26 chr6 116621535 116621688 -32895349 + LTR16D1 LTR ERVL 9 173 -502 1 1474 330 26 0 0 chr6 116622177 116622216 -32894821 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1474 528 59 0 0 chr6 116622216 116622284 -32894753 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1474 410 285 50 50 chr6 116622697 116622856 -32894181 + RSINE1 SINE B4 3 161 -4 1 1474 432 0 0 0 chr6 116622860 116622908 -32894129 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1474 273 119 0 0 chr6 116622945 116622987 -32894050 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 1474 332 285 98 109 chr6 116625595 116625654 -32891383 - B4A SINE B4 -18 274 223 1 1474 252 0 0 0 chr6 116625654 116625682 -32891355 + (CCCA)n Simple_repeat Simple_repeat 4 31 0 1 1474 532 247 168 42 chr6 116625682 116625833 -32891204 - ID_B1 SINE B4 -70 222 52 1 1474 451 162 28 0 chr6 116625968 116626050 -32890987 + B1_Mur4 SINE Alu 55 141 -9 1 1474 269 26 0 26 chr6 116626050 116626089 -32890948 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1474 517 307 132 4 chr6 116628052 116628310 -32888727 + MER2 DNA MER2_type 39 329 -16 1 1474 983 301 70 34 chr6 116628305 116628690 -32888347 - MLT2C2 LTR ERVL -65 399 1 1 1474 302 150 40 0 chr6 116628820 116628890 -32888147 - PB1D9 SINE Alu -21 126 59 1 1474 281 294 12 7 chr6 116629046 116629151 -32887886 - MER58A DNA MER1_type -107 234 38 1 1474 306 277 12 24 chr6 116629221 116629306 -32887731 - MLT1L LTR MaLR -62 548 465 1 1474 343 277 68 23 chr6 116630243 116630376 -32886661 + RMER5 LTR ERV1 42 180 -354 1 1474 351 277 21 21 chr6 116631088 116631184 -32885853 - RMER15 LTR ERVL -178 397 302 1 1474 526 297 101 32 chr6 116631916 116632135 -32884902 + RMER15 LTR ERVL 339 572 -3 1 1474 286 290 25 99 chr6 116632179 116632340 -32884697 + L2c LINE L2 3229 3377 -10 1 1474 255 331 72 26 chr6 116633532 116633684 -32883353 - MIRb SINE MIR -59 209 51 2 1474 234 193 0 0 chr6 116633777 116633834 -32883203 + (TGAG)n Simple_repeat Simple_repeat 2 58 0 2 1474 670 272 31 36 chr6 116634094 116634319 -32882718 - ID_B1 SINE B4 0 224 1 2 1474 4471 16 0 2 chr6 116635173 116635667 -32881370 + MT2_Mm LTR ERVL 1 493 0 2 1474 45683 16 11 0 chr6 116635667 116640971 -32876066 + MERVL-int LTR ERVL 1 5360 -125 2 1474 399 167 46 35 chr6 116640971 116641058 -32875979 + ORR1A3-int LTR MaLR 553 640 -1323 2 1474 305 0 0 0 chr6 116641058 116641096 -32875941 + MERVL-int LTR ERVL 5448 5485 0 2 1474 4487 14 0 2 chr6 116641096 116641590 -32875447 + MT2_Mm LTR ERVL 1 493 0 2 1474 350 278 54 108 chr6 116642517 116642795 -32874242 + L1MB7 LINE L1 5912 6174 -10 2 1474 429 20 0 0 chr6 116642815 116642865 -32874172 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 2 1474 1118 242 110 54 chr6 116642909 116643245 -32873792 + ORR1E LTR MaLR 5 359 0 2 1474 247 49 0 47 chr6 116643757 116643800 -32873237 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 2 1474 2052 198 30 2 chr6 116648728 116649134 -32867903 + MTD LTR MaLR 1 417 -2 2 1474 369 353 43 21 chr6 116649818 116650006 -32867031 + MIR SINE MIR 61 252 -10 2 1474 325 343 99 39 chr6 116650117 116650299 -32866738 - MIR SINE MIR -31 231 39 2 1474 303 342 111 11 chr6 116651192 116651381 -32865656 + MIRb SINE MIR 5 212 -56 2 1474 293 225 11 0 chr6 116651494 116651583 -32865454 + (TGGA)n Simple_repeat Simple_repeat 4 93 0 2 1474 308 313 18 18 chr6 116651600 116651797 -32865240 + (TGGA)n Simple_repeat Simple_repeat 1 197 0 2 1474 357 318 8 8 chr6 116653270 116653403 -32863634 - BC1_Mm scRNA scRNA -18 134 2 2 184 944 327 89 35 chr6 116653937 116654698 -32862339 - L1ME1 LINE L1 -11 6168 5367 2 1475 474 157 0 0 chr6 116655020 116655103 -32861934 + CT-rich Low_complexity Low_complexity 2 84 0 2 1475 292 306 47 37 chr6 116655103 116655306 -32861731 - L1ME1 LINE L1 -1949 4197 3999 2 1475 703 255 62 26 chr6 116655334 116655527 -32861510 + B3 SINE B2 15 214 -2 2 1475 2718 268 44 60 chr6 116655537 116656813 -32860224 + Lx8 LINE L1 2229 3484 -2396 2 1475 4464 276 59 42 chr6 116656809 116658823 -32858214 + Lx8 LINE L1 4209 6291 -1182 2 1475 348 83 0 0 chr6 116658823 116658871 -32858166 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2 1475 3194 315 76 47 chr6 116658871 116660054 -32856983 + Lx8 LINE L1 6292 7464 -9 2 1475 1205 201 182 23 chr6 116660290 116660637 -32856400 - MTD LTR MaLR 0 419 18 2 1475 225 254 28 175 chr6 116660513 116660656 -32856381 - MT2A LTR ERVL -411 122 1 2 1475 305 259 38 7 chr6 116660662 116660809 -32856228 - L1ME1 LINE L1 -2495 3648 3494 2 1475 883 321 58 11 chr6 116661161 116661612 -32855425 + L1MA4 LINE L1 5436 5907 -393 2 1475 279 0 0 0 chr6 116661631 116661662 -32855375 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1475 215 181 56 0 chr6 116661701 116661773 -32855264 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1475 23 0 0 0 chr6 116661816 116661839 -32855198 + AT_rich Low_complexity Low_complexity 1 23 0 2 1475 525 242 53 0 chr6 116661842 116661974 -32855063 + B1F SINE Alu 3 141 -8 2 1475 183 80 0 0 chr6 116662602 116662627 -32854410 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1475 1019 206 29 10 chr6 116662763 116662969 -32854068 + B3 SINE B2 1 210 -6 2 1475 213 39 0 0 chr6 116663210 116663236 -32853801 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1475 754 194 77 24 chr6 116663522 116663691 -32853346 - URR1B DNA MER1_type -47 178 1 2 1475 3205 63 15 0 chr6 116663745 116664139 -32852898 + MTB LTR MaLR 1 400 0 2 1475 189 276 60 89 chr6 116665223 116665356 -32851681 + MIR3 SINE MIR 28 154 -54 2 1475 320 0 25 0 chr6 116667889 116667929 -32849108 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1475 402 74 0 0 chr6 116671002 116671056 -32845981 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1475 1090 132 196 0 chr6 116671150 116671339 -32845698 - URR1A DNA MER1_type 0 226 1 2 1475 503 268 82 36 chr6 116671397 116671642 -32845395 + MLT1F1 LTR MaLR 308 569 0 2 1475 3906 77 37 11 chr6 116673851 116674392 -32842645 + L1_Mus3 LINE L1 6084 6638 0 2 1475 333 319 42 18 chr6 116675223 116675389 -32841648 + MER5B DNA MER1_type 1 170 -8 2 1475 205 296 0 0 chr6 116675414 116675468 -32841569 - MER5B DNA MER1_type 0 178 125 2 1475 451 303 30 8 chr6 116675813 116675946 -32841091 - B1F SINE Alu -9 140 5 2 1475 282 225 21 73 chr6 116675955 116676051 -32840986 - BC1_Mm scRNA scRNA -47 105 15 2 1475 369 322 20 80 chr6 116676197 116676447 -32840590 - MER57E1 LTR ERV1 0 372 138 2 1475 1322 226 80 20 chr6 116676661 116677120 -32839917 - Lx9 LINE L1 -205 7268 6783 2 1475 36971 43 1 17 chr6 116677421 116682583 -32834454 + L1Md_A LINE L1 511 5586 -297 2 1475 8694 27 1 0 chr6 116682583 116683578 -32833459 + L1Md_A LINE L1 5587 6582 0 2 1475 226 309 31 21 chr6 116683632 116683728 -32833309 - ORR1E LTR MaLR -221 138 42 2 1475 1044 0 0 0 chr6 116683949 116684074 -32832963 + L1Md_T LINE L1 6458 6582 0 2 1475 239 222 136 39 chr6 116684171 116684274 -32832763 - MER2 DNA MER2_type -141 204 92 2 1475 1019 300 121 11 chr6 116685078 116685146 -32831891 - MER44B DNA MER2_type -34 516 450 2 1475 258 32 0 0 chr6 116685146 116685177 -32831860 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2 1475 1019 300 121 11 chr6 116685177 116685556 -32831481 - MER44B DNA MER2_type -101 449 21 2 1475 1460 241 20 81 chr6 116687329 116687775 -32829262 - MTD LTR MaLR 0 419 1 2 1475 787 260 36 17 chr6 116687778 116688039 -32828998 + L1M3 LINE L1 5362 5631 -552 2 1475 253 208 108 25 chr6 116688243 116688401 -32828636 + (TGG)n Simple_repeat Simple_repeat 1 171 0 2 1475 2719 88 3 19 chr6 116688755 116689126 -32827911 - RLTR8 LTR ERVK 0 365 1 2 1475 189 0 0 0 chr6 116690044 116690065 -32826972 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1475 447 19 0 0 chr6 116690065 116690116 -32826921 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1475 42089 6 0 1 chr6 116690244 116697497 -32819540 - L1Md_A LINE L1 0 6582 1 2 1475 1311 225 104 43 chr6 116698098 116698391 -32818646 + MTD LTR MaLR 6 333 -86 2 1475 4015 50 8 4 chr6 116698391 116698888 -32818149 + L1Md_F2 LINE L1 6084 6582 0 2 1475 1311 225 104 43 chr6 116698888 116698970 -32818067 + MTD LTR MaLR 334 404 -15 2 1475 964 309 46 31 chr6 116699574 116699964 -32817073 - MLT1A1 LTR MaLR -8 400 5 2 1475 417 259 90 67 chr6 116700202 116700304 -32816733 - MLT1A1 LTR MaLR -52 356 247 2 1475 2732 164 42 29 chr6 116700304 116700825 -32816212 - RLTR11A LTR ERVK 0 528 1 2 1475 417 243 539 55 chr6 116700825 116700994 -32816043 - MLT1A1 LTR MaLR -162 246 1 2 1475 318 167 51 13 chr6 116701283 116701441 -32815596 - RMER17D2 LTR ERVK -300 509 346 2 1475 2207 260 50 15 chr6 116701557 116702142 -32814895 - Lx8 LINE L1 -435 7038 6434 2 1475 243 0 0 0 chr6 116702950 116702977 -32814060 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1475 245 27 54 0 chr6 116702978 116703015 -32814022 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 2 1475 398 325 115 25 chr6 116703457 116703700 -32813337 + MER21B LTR ERV1 513 777 -86 2 1475 262 325 82 64 chr6 116706850 116707070 -32809967 - MER34A1 LTR ERV1 -174 413 190 2 1475 408 39 0 0 chr6 116707085 116707109 -32809928 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1475 975 46 122 0 chr6 116707109 116707240 -32809797 + B1_Mm SINE Alu 1 147 0 2 1475 408 39 0 0 chr6 116707240 116707267 -32809770 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1475 505 334 137 32 chr6 116707341 116707802 -32809235 - Lx8 LINE L1 -1 7472 6964 2 1475 2268 162 28 19 chr6 116707849 116708322 -32808715 + RLTR28 LTR ERVL 48 524 0 2 1475 1293 290 197 31 chr6 116708377 116708972 -32808065 - Lx8 LINE L1 -858 6838 6145 2 1475 787 103 79 8 chr6 116708972 116709091 -32807946 + B1_Mm SINE Alu 10 138 -9 2 1475 202 29 0 54 chr6 116709091 116709128 -32807909 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1475 427 185 8 30 chr6 116709178 116709311 -32807726 - Lx7 LINE L1 -32 7664 7583 2 1475 1594 79 0 14 chr6 116709311 116709530 -32807507 + L1Md_F2 LINE L1 6356 6571 -11 2 1475 424 252 31 89 chr6 116709583 116709840 -32807197 - Lx8 LINE L1 -552 5328 5087 2 1475 22 0 0 0 chr6 116711086 116711108 -32805929 + AT_rich Low_complexity Low_complexity 1 22 0 2 1475 1500 213 66 6 chr6 116711571 116711920 -32805117 - ORR1D2 LTR MaLR 0 370 1 2 1475 693 269 85 32 chr6 116711920 116712162 -32804875 - MER2 DNA MER2_type -64 281 27 2 1475 452 276 151 113 chr6 116712199 116712571 -32804466 + MLT2C1 LTR ERVL 3 388 -9 2 1475 280 303 11 0 chr6 116712964 116713053 -32803984 - PB1D10 SINE Alu -5 112 23 2 1475 223 269 62 25 chr6 116713000 116713080 -32803957 - ID_B1 SINE B4 -68 156 74 2 1475 1076 133 0 6 chr6 116713325 116713506 -32803531 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1475 239 210 118 47 chr6 116713776 116713861 -32803176 - L1M5 LINE L1 -2011 4135 4045 2 1475 2906 209 56 186 chr6 116713957 116715125 -32801912 - RMER1B Other Other -4 1062 47 2 1475 321 326 87 98 chr6 116715711 116716452 -32800585 - L1M5 LINE L1 -2190 3956 3239 2 1475 811 172 0 14 chr6 116716452 116716599 -32800438 - B1_Mur4 SINE Alu -1 149 5 2 1475 321 326 87 98 chr6 116716599 116716895 -32800142 - L1M5 LINE L1 -2908 3238 2931 2 1475 895 94 306 17 chr6 116717100 116717273 -32799764 + URR1A DNA MER1_type 4 226 0 2 1475 186 133 0 0 chr6 116719767 116719797 -32797240 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 2 1475 260 309 110 79 chr6 116719797 116720089 -32796948 - ORR1E LTR MaLR -52 307 7 2 1475 630 349 74 6 chr6 116720258 116720581 -32796456 + MER2 DNA MER2_type 1 345 0 2 1475 1182 293 137 23 chr6 116720810 116721776 -32795261 - L1MA4A LINE L1 -319 5984 4889 2 1475 363 163 58 0 chr6 116723980 116724066 -32792971 - Lx9 LINE L1 0 7644 7554 2 1475 225 83 0 0 chr6 116724328 116724364 -32792673 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1475 480 264 106 32 chr6 116724623 116724811 -32792226 - ORR1D2 LTR MaLR 0 370 169 2 1475 218 318 44 22 chr6 116724859 116724994 -32792043 - B1_Mus2 SINE Alu 0 147 10 2 1475 936 266 60 54 chr6 116725774 116726143 -32790894 - MTEa LTR MaLR -8 371 1 2 1475 243 0 0 0 chr6 116726315 116726342 -32790695 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1475 280 324 19 82 chr6 116727181 116727339 -32789698 - MLT1A LTR MaLR -178 196 49 2 1475 724 256 130 39 chr6 116727401 116727731 -32789306 + RLTR9A LTR ERVK 1 360 -8 2 1475 376 262 0 38 chr6 116728768 116728910 -32788127 - MLT1A1 LTR MaLR -2 406 257 3 1475 548 81 11 0 chr6 116728938 116729025 -32788012 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 1475 713 242 90 30 chr6 116729053 116729253 -32787784 - B3 SINE B2 -2 214 3 3 1475 24566 140 58 28 chr6 116729324 116733289 -32783748 - Lx5 LINE L1 -871 6179 2050 3 1475 201 39 0 0 chr6 116733289 116733315 -32783722 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1475 24566 170 54 14 chr6 116733315 116734417 -32782620 - Lx5 LINE L1 -3828 2049 882 3 1475 1418 264 80 29 chr6 116735105 116735592 -32781445 + Lx9 LINE L1 6972 7483 -161 3 1475 207 0 0 0 chr6 116735703 116735726 -32781311 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1475 255 61 0 0 chr6 116735726 116735759 -32781278 + (CTTTG)n Simple_repeat Simple_repeat 5 37 0 3 1475 594 28 0 0 chr6 116736029 116736101 -32780936 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 3 1475 217 318 126 9 chr6 116736783 116736894 -32780143 - L4 LINE RTE -803 1226 1103 3 1475 234 0 0 0 chr6 116737514 116737540 -32779497 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 3 1475 268 226 153 12 chr6 116737616 116737701 -32779336 - B4A SINE B4 -195 97 1 3 1475 264 122 0 0 chr6 116737711 116737752 -32779285 + (CACCAT)n Simple_repeat Simple_repeat 4 44 0 3 1475 999 297 60 71 chr6 116737797 116738654 -32778383 - L1MA6 LINE L1 -1317 6156 5325 3 1475 1924 242 8 10 chr6 116738659 116739110 -32777927 - RMER1B Other Other -616 450 7 3 1475 27 73 0 0 chr6 116739626 116739681 -32777356 + AT_rich Low_complexity Low_complexity 1 55 0 3 1475 528 253 44 27 chr6 116739710 116739893 -32777144 + Lx8 LINE L1 4672 4857 -1023 3 1475 2666 228 29 59 chr6 116739894 116740084 -32776953 + Lx8 LINE L1 5059 5237 -643 3 1475 860 282 14 0 chr6 116740084 116740297 -32776740 + B3 SINE B2 1 216 0 3 1475 3175 255 46 54 chr6 116740297 116741221 -32775816 + Lx8 LINE L1 5238 6159 -1314 3 1475 180 0 0 0 chr6 116741221 116741241 -32775796 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1475 3175 317 87 44 chr6 116741241 116742014 -32775023 + Lx8 LINE L1 6160 6952 -521 3 1475 492 18 0 0 chr6 116742014 116742071 -32774966 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1475 3175 317 87 44 chr6 116742071 116742517 -32774520 + Lx8 LINE L1 6953 7445 -28 3 1475 23 33 0 0 chr6 116742529 116742559 -32774478 + AT_rich Low_complexity Low_complexity 1 30 0 3 1475 962 248 29 0 chr6 116742745 116742951 -32774086 - B3 SINE B2 0 216 5 3 1475 734 36 36 0 chr6 116744968 116745079 -32771958 + L1Md_F3 LINE L1 6470 6584 0 3 1475 1116 255 160 8 chr6 116745088 116745463 -32771574 + MER57F LTR ERV1 5 436 0 3 1475 645 242 38 13 chr6 116746441 116746600 -32770437 + RSINE1 SINE B4 3 165 0 3 1475 747 191 0 0 chr6 116746600 116746762 -32770275 + (CA)n Simple_repeat Simple_repeat 1 162 0 3 1475 235 83 56 0 chr6 116746764 116746800 -32770237 + (CATA)n Simple_repeat Simple_repeat 2 39 0 3 1475 858 180 0 0 chr6 116746801 116746979 -32770058 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1475 1002 162 0 0 chr6 116747936 116748115 -32768922 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 3 1475 1147 241 34 46 chr6 116748297 116748744 -32768293 + L1_Mur3 LINE L1 2474 2929 -2948 3 1475 516 327 35 72 chr6 116748747 116749037 -32768000 - RMER15-int LTR ERVL -4499 500 222 3 1475 443 231 24 64 chr6 116749082 116749207 -32767830 - RMER15-int LTR ERVL -4872 127 8 3 1475 417 215 24 24 chr6 116749207 116749331 -32767706 + L1_Mur3 LINE L1 3160 3283 -2597 3 1475 33898 73 2 5 chr6 116749337 116754332 -32762705 + L1Md_F3 LINE L1 611 5586 -297 3 1475 8274 43 5 0 chr6 116754332 116755325 -32761712 + L1Md_F3 LINE L1 5587 6584 0 3 1475 2230 279 58 16 chr6 116755326 116756119 -32760918 + L1_Mur3 LINE L1 3270 4095 -1785 3 1475 472 244 25 15 chr6 116756126 116756286 -32760751 + Lx7 LINE L1 5799 5961 -1512 3 1475 188 111 28 0 chr6 116756321 116756357 -32760680 + (TAAAAA)n Simple_repeat Simple_repeat 5 41 0 3 1475 1778 294 139 31 chr6 116756460 116757156 -32759881 - Lx8 LINE L1 -570 6903 6133 3 1475 3700 75 12 0 chr6 116757444 116757927 -32759110 + L1_Mus1 LINE L1 6079 6567 0 3 1475 23 92 0 0 chr6 116758756 116758821 -32758216 + AT_rich Low_complexity Low_complexity 1 65 0 3 1475 245 261 38 105 chr6 116760384 116760517 -32756520 + MLT1A0 LTR MaLR 242 365 0 3 1475 4209 52 2 9 chr6 116762436 116762961 -32754076 + L1Md_F2 LINE L1 6062 6582 0 3 1475 470 285 0 27 chr6 116763163 116763266 -32753771 + polypurine Low_complexity Low_complexity 1 100 0 3 1475 3184 61 18 2 chr6 116763266 116763660 -32753377 - MTB LTR MaLR 0 400 1 3 1475 470 285 0 27 chr6 116763660 116763788 -32753249 + GA-rich Low_complexity Low_complexity 56 179 0 3 1475 764 318 30 81 chr6 116763942 116764235 -32752802 - MTE2a LTR MaLR -5 374 103 3 1475 336 24 0 0 chr6 116764235 116764276 -32752761 + (CAAT)n Simple_repeat Simple_repeat 1 41 0 3 1475 764 318 30 81 chr6 116764276 116764376 -32752661 - MTE2a LTR MaLR -277 102 1 3 1475 1023 198 129 21 chr6 116764562 116764841 -32752196 - ORR1D2 LTR MaLR 0 370 62 3 1475 983 250 127 21 chr6 116765066 116765376 -32751661 - ORR1D2 LTR MaLR -4 366 22 3 1475 447 19 0 0 chr6 116765376 116765428 -32751609 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1475 983 250 127 21 chr6 116765428 116765448 -32751589 - ORR1D2 LTR MaLR -349 21 2 3 1475 29 0 0 0 chr6 116765637 116765666 -32751371 + AT_rich Low_complexity Low_complexity 1 29 0 3 1475 248 270 0 0 chr6 116766186 116766249 -32750788 - MIRc SINE MIR -113 155 93 3 1475 570 326 221 12 chr6 116766865 116767056 -32749981 + Tigger7 DNA MER2_type 7 229 -2262 3 1475 294 95 0 0 chr6 116767056 116767098 -32749939 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 3 1475 570 326 221 12 chr6 116767098 116767403 -32749634 + Tigger7 DNA MER2_type 230 606 -1885 3 1475 480 321 42 0 chr6 116770545 116770735 -32746302 + MER2 DNA MER2_type 94 291 -54 3 1475 191 340 61 10 chr6 116770768 116770866 -32746171 + L2b LINE L2 3196 3298 -77 3 1475 585 211 9 0 chr6 116771841 116771955 -32745082 + B3 SINE B2 16 130 -86 3 1475 372 88 0 0 chr6 116772007 116772064 -32744973 + (CAA)n Simple_repeat Simple_repeat 3 59 0 3 1475 227 251 264 73 chr6 116772751 116773002 -32744035 + MER57D LTR ERV1 108 406 -5 3 1475 604 284 91 19 chr6 116773267 116773475 -32743562 + MER2 DNA MER2_type 122 344 -1 3 1475 376 139 25 0 chr6 116774472 116774551 -32742486 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 1475 1036 222 10 10 chr6 116774601 116774810 -32742227 + B3 SINE B2 1 209 -7 3 1475 3510 161 106 78 chr6 116774818 116775668 -32741369 + RMER19B LTR ERVK 1 874 -28 3 1475 513 277 154 25 chr6 116779855 116780211 -32736826 - MER57E2 LTR ERV1 0 402 1 3 1475 2873 281 66 8 chr6 116780273 116781109 -32735928 - Lx8 LINE L1 -29 7444 6561 3 1475 1102 37 0 43 chr6 116781136 116781276 -32735761 + B1_Mus2 SINE Alu 1 134 -13 3 1475 534 31 0 0 chr6 116781278 116781342 -32735695 + (GAAAA)n Simple_repeat Simple_repeat 3 66 0 3 1475 596 131 11 78 chr6 116781386 116781577 -32735460 + GA-rich Low_complexity Low_complexity 1 178 0 3 1475 1053 246 58 4 chr6 116781579 116781840 -32735197 - Lx8 LINE L1 -943 6530 6256 3 1475 2908 227 30 21 chr6 116781852 116782626 -32734411 - L1_Mur3 LINE L1 -1293 4587 3807 3 1475 539 245 41 53 chr6 116782768 116783014 -32734023 + MTD-int LTR MaLR 1016 1258 0 3 1475 1294 239 75 35 chr6 116783018 116783417 -32733620 + MTD LTR MaLR 5 419 0 3 1475 864 361 44 12 chr6 116783437 116783868 -32733169 - Lx8 LINE L1 -207 7266 6822 3 1475 1435 221 100 11 chr6 116783871 116784232 -32732805 + MYSERV-int LTR ERVK 5873 6265 -285 3 1475 536 221 12 76 chr6 116784214 116784385 -32732652 + MYSERV-int LTR ERVK 6389 6548 -2 3 1475 1790 240 41 20 chr6 116784396 116784889 -32732148 + RLTR11A2 LTR ERVK 11 513 -14 3 184 1843 239 148 24 chr6 116785091 116785770 -32731267 - Lx6 LINE L1 -64 7396 6634 3 1476 1871 170 18 3 chr6 116785773 116786104 -32730933 + ORR1B1 LTR MaLR 5 340 -54 3 1476 4408 226 36 9 chr6 116786123 116787091 -32729946 - Lx6 LINE L1 -821 6639 5646 3 1476 2988 224 128 20 chr6 116787090 116787981 -32729056 + L1_Mur1 LINE L1 4664 5650 -236 3 1476 613 309 103 3 chr6 116787964 116788256 -32728781 - L1MDa LINE L1 -4701 1932 1612 3 1476 216 0 0 0 chr6 116788382 116788406 -32728631 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1476 948 86 7 0 chr6 116788406 116788545 -32728492 - B1_Mus2 SINE Alu 0 147 8 3 1476 893 153 40 29 chr6 116788641 116788816 -32728221 - ORR1B1 LTR MaLR -165 229 53 3 1476 360 360 45 6 chr6 116789232 116789411 -32727626 - L1MDa LINE L1 -6158 475 290 3 1476 730 164 0 14 chr6 116789641 116789654 -32727383 + polypyrimidine Low_complexity Low_complexity 138 150 0 3 1476 1050 105 17 0 chr6 116789654 116789826 -32727211 + (TCC)n Simple_repeat Simple_repeat 1 175 0 3 1476 730 164 0 14 chr6 116789826 116789960 -32727077 + CT-rich Low_complexity Low_complexity 5 137 0 3 1476 259 167 0 0 chr6 116789960 116790002 -32727035 + T-rich Low_complexity Low_complexity 1 42 0 3 1476 6573 146 13 16 chr6 116790022 116791134 -32725903 - Lx4B LINE L1 -7 7051 5944 3 1476 285 182 0 0 chr6 116791177 116791232 -32725805 + (TAA)n Simple_repeat Simple_repeat 3 57 0 3 1476 353 329 73 37 chr6 116793291 116793591 -32723446 - L2a LINE L2 -124 3302 2992 3 1476 1203 226 137 18 chr6 116793591 116793920 -32723117 + ORR1D2 LTR MaLR 1 368 -2 3 1476 559 259 0 0 chr6 116793923 116794054 -32722983 + ORR1D2-int LTR MaLR 2 132 -1238 3 1476 3040 238 59 46 chr6 116794047 116795064 -32721973 + ORR1D2-int LTR MaLR 341 1370 0 3 1476 1337 254 47 12 chr6 116795064 116795407 -32721630 + ORR1D2 LTR MaLR 1 355 -15 3 1476 1593 140 66 3 chr6 116795384 116795670 -32721367 - ORR1A1 LTR MaLR -10 336 33 3 1476 190 343 71 18 chr6 116795801 116795970 -32721067 - L2a LINE L2 -510 2909 2732 3 1476 238 325 0 0 chr6 116796433 116796510 -32720527 - MER103 DNA DNA -67 99 23 3 1476 508 148 8 8 chr6 116797946 116798069 -32718968 + (CA)n Simple_repeat Simple_repeat 2 124 0 3 1476 192 97 0 0 chr6 116798069 116798100 -32718937 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1476 297 283 106 21 chr6 116799786 116799927 -32717110 - MER2 DNA MER2_type -54 291 139 3 1476 19119 65 20 7 chr6 116799929 116800765 -32716272 - MusHAL1 LINE L1 -57 3296 2433 3 1476 252 0 0 0 chr6 116800765 116800793 -32716244 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1476 19119 70 16 6 chr6 116800793 116803201 -32713836 - MusHAL1 LINE L1 -921 2432 21 3 1476 873 163 0 13 chr6 116803201 116803356 -32713681 + RMER19C LTR ERVK 459 611 0 3 1476 183 186 0 0 chr6 116803437 116803480 -32713557 + (AACTG)n Simple_repeat Simple_repeat 2 44 0 3 1476 617 315 67 15 chr6 116803912 116804241 -32712796 + MLT1B LTR MaLR 45 390 0 3 1476 196 87 0 80 chr6 116805210 116805260 -32711777 + (CATG)n Simple_repeat Simple_repeat 1 46 0 3 1476 374 252 98 74 chr6 116807046 116807209 -32709828 - MER121 Unknown Unknown -113 299 133 3 1476 306 182 0 93 chr6 116808348 116808445 -32708592 - MLT1A1 LTR MaLR 0 408 321 3 1476 547 244 130 6 chr6 116808900 116809069 -32707968 - L1M3 LINE L1 -1756 4384 4195 3 1476 3425 45 0 0 chr6 116809224 116809620 -32707417 + MTA_Mm LTR MaLR 1 396 0 3 1476 329 202 32 16 chr6 116809804 116809930 -32707107 + (TCTA)n Simple_repeat Simple_repeat 2 129 0 3 1476 233 57 29 0 chr6 116810597 116810632 -32706405 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 4 1476 1413 141 155 8 chr6 116810684 116810942 -32706095 + Lx2 LINE L1 6659 6954 -43 4 1476 251 175 14 87 chr6 116810942 116811011 -32706026 + 4.5SRNA scRNA scRNA 23 86 -8 4 1476 712 58 0 46 chr6 116810961 116811070 -32705967 + B1_Mus2 SINE Alu 44 147 0 4 1476 197 146 0 20 chr6 116811105 116811154 -32705883 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 4 1476 224 247 0 27 chr6 116812496 116812571 -32704466 + (CAGAGA)n Simple_repeat Simple_repeat 4 76 0 4 1476 288 170 0 0 chr6 116812586 116812639 -32704398 + GA-rich Low_complexity Low_complexity 1 53 0 4 1476 219 225 0 0 chr6 116812971 116813011 -32704026 + L2a LINE L2 3374 3413 -13 4 1476 343 321 60 36 chr6 116814516 116814765 -32702272 + L1_Rod LINE L1 5020 5291 -589 4 1476 811 299 36 26 chr6 116814781 116815083 -32701954 + Lx8 LINE L1 6626 6930 -543 4 1476 321 314 0 0 chr6 116815100 116815202 -32701835 + Lx8 LINE L1 6989 7090 -383 4 1476 300 145 16 0 chr6 116815202 116815264 -32701773 - RMER13B LTR ERVK 0 908 846 4 1476 623 231 60 3 chr6 116815259 116815427 -32701610 - RMER13A LTR ERVK -12 896 686 4 1476 924 228 34 5 chr6 116815636 116815843 -32701194 + B3 SINE B2 1 213 -3 4 1476 1875 150 93 8 chr6 116818320 116818676 -32698361 + ORR1B1 LTR MaLR 1 386 -8 4 1476 1105 290 44 3 chr6 116819746 116820040 -32696997 - Lx8 LINE L1 -619 6854 6549 4 1476 876 322 87 40 chr6 116820114 116820664 -32696373 + Lx8 LINE L1 6872 7447 -26 4 1476 266 287 7 0 chr6 116820802 116820945 -32696092 + GA-rich Low_complexity Low_complexity 2 145 0 4 1476 3310 15 0 47 chr6 116821591 116821998 -32695039 + RLTR10 LTR ERVK 1 388 -2 4 1476 5055 35 1 0 chr6 116822010 116823030 -32694007 + RLTR10-int LTR ERVK 41 988 -999 4 1476 9020 16 1 0 chr6 116823109 116824103 -32692934 + RLTR10-int LTR ERVK 990 1984 -3 4 1476 3330 15 0 47 chr6 116824105 116824514 -32692523 + RLTR10 LTR ERVK 1 390 0 4 1476 261 0 0 0 chr6 116824741 116824770 -32692267 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1476 825 176 7 0 chr6 116824773 116824915 -32692122 - B1_Mur3 SINE Alu -6 143 1 4 1476 460 197 106 34 chr6 116825361 116825510 -32691527 - L1MD3 LINE L1 -19 7976 7828 4 1476 22 35 0 0 chr6 116825958 116825987 -32691050 + AT_rich Low_complexity Low_complexity 1 29 0 4 1476 38812 46 1 4 chr6 116827140 116834031 -32683006 - L1Md_T LINE L1 0 6585 1 4 1476 465 309 30 6 chr6 116834038 116834204 -32682833 + MER3 DNA MER1_type 39 208 -1 4 1476 246 167 0 45 chr6 116834331 116834375 -32682662 + RSINE1 SINE B4 2 43 -122 4 1476 441 36 0 0 chr6 116834381 116834436 -32682601 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1476 189 0 0 0 chr6 116834453 116834474 -32682563 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1476 1785 178 149 5 chr6 116834475 116834854 -32682183 - MT2A LTR ERVL -85 448 13 4 1476 3094 108 30 5 chr6 116834854 116835292 -32681745 + Lx2B LINE L1 6552 7000 0 4 1476 538 133 106 0 chr6 116835306 116835419 -32681618 - MERVL_2A-int LTR ERVL -2 5759 5635 4 1476 429 141 0 0 chr6 116835423 116835494 -32681543 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1476 2911 178 70 58 chr6 116835496 116836128 -32680909 - MERVL_2A-int LTR ERVL -140 5621 4983 4 1476 2575 206 39 2 chr6 116836124 116836639 -32680398 - MERVL_2A-int LTR ERVL -1254 4507 3974 4 1476 13414 193 39 9 chr6 116836640 116839183 -32677854 - MERVL_2A-int LTR ERVL -1930 3831 1212 4 1476 1324 227 14 21 chr6 116839185 116839469 -32677568 - MT2A LTR ERVL -103 430 149 4 1476 21 36 0 0 chr6 116841342 116841370 -32675667 + AT_rich Low_complexity Low_complexity 1 28 0 4 1476 192 135 0 0 chr6 116842117 116842154 -32674883 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 1476 221 323 70 31 chr6 116842220 116842348 -32674689 - L2a LINE L2 -7 3419 3287 4 1476 412 273 9 0 chr6 116842686 116842792 -32674245 - PB1D10 SINE Alu -8 109 3 4 1476 745 315 82 27 chr6 116843290 116843731 -32673306 - L1ME3A LINE L1 -140 6033 5569 4 1476 28 29 0 0 chr6 116843808 116843843 -32673194 + AT_rich Low_complexity Low_complexity 1 35 0 4 1476 357 109 0 0 chr6 116844338 116844393 -32672644 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1476 204 360 47 31 chr6 116846904 116847033 -32670004 + MIRb SINE MIR 81 211 -57 4 1476 1124 214 19 0 chr6 116847053 116847263 -32669774 + B3 SINE B2 2 215 -1 4 1476 263 299 64 13 chr6 116847265 116847421 -32669616 + L1MD2 LINE L1 4803 4966 -1180 4 1476 1180 272 101 15 chr6 116847907 116848243 -32668794 - MTE2b LTR MaLR -14 365 1 4 1476 537 289 131 20 chr6 116848277 116848514 -32668523 + L1MD2 LINE L1 5223 5478 -764 4 1476 185 0 0 39 chr6 116848514 116848540 -32668497 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1476 537 323 138 34 chr6 116848540 116848953 -32668084 + L1MD2 LINE L1 5479 5942 -300 4 1476 673 308 61 26 chr6 116849007 116849317 -32667720 + L1MD2 LINE L1 6038 6358 -1 4 1476 735 292 108 5 chr6 116849383 116849596 -32667441 + B4 SINE B4 8 242 -50 4 1476 320 45 0 0 chr6 116849596 116849640 -32667397 - L1_Mm LINE L1 -3809 2074 2031 4 1476 7499 53 11 2 chr6 116849640 116850526 -32666511 + L1Md_F2 LINE L1 5678 6571 -11 4 1476 626 343 24 24 chr6 116851393 116851730 -32665307 + L1MA5 LINE L1 5624 5960 -340 4 1476 414 0 0 0 chr6 116852103 116852149 -32664888 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1476 248 268 65 58 chr6 116852738 116852858 -32664179 + MIRc SINE MIR 118 236 -32 4 1476 629 214 0 0 chr6 116852976 116853088 -32663949 + B3 SINE B2 1 112 -104 4 1476 423 231 13 0 chr6 116853231 116853309 -32663728 + B3 SINE B2 127 205 -11 4 1476 4183 286 114 34 chr6 116854299 116855812 -32661225 + ORR1E-int LTR MaLR 1 1527 -53 4 1476 733 270 181 10 chr6 116855812 116856111 -32660926 + ORR1E LTR MaLR 1 350 -9 4 1476 603 294 107 55 chr6 116857642 116857755 -32659282 - L1MA4 LINE L1 -385 5915 5813 4 1476 937 159 0 0 chr6 116857755 116857912 -32659125 - Lx2 LINE L1 0 6997 6841 4 1476 630 276 250 4 chr6 116857912 116858222 -32658815 - L1MA4 LINE L1 -488 5812 5428 4 1476 1326 265 75 19 chr6 116858236 116858652 -32658385 - Lx8 LINE L1 0 7473 7035 4 1476 501 287 115 17 chr6 116858660 116858947 -32658090 - L1MA4 LINE L1 -743 5400 5086 4 1476 1105 237 36 4 chr6 116858949 116859199 -32657838 + Lx8 LINE L1 6420 6677 -796 4 1476 267 31 0 0 chr6 116859229 116859261 -32657776 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1476 262 115 39 0 chr6 116859352 116859404 -32657633 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1476 34 0 0 0 chr6 116859478 116859512 -32657525 + AT_rich Low_complexity Low_complexity 1 34 0 4 1476 1459 91 11 0 chr6 116859794 116859981 -32657056 - B2_Mm1t SINE B2 -4 189 1 4 1476 940 131 213 0 chr6 116860311 116860494 -32656543 - URR1B DNA MER1_type -3 222 1 4 1476 238 366 12 12 chr6 116861470 116861553 -32655484 - Tigger13a DNA MER2_type -640 131 49 4 1476 622 218 70 6 chr6 116861637 116861794 -32655243 - L1MC1 LINE L1 -105 6228 6062 4 1476 326 290 16 8 chr6 116861803 116861928 -32655109 - L1M4 LINE L1 -2598 3548 3423 4 1476 567 231 21 106 chr6 116861935 116862172 -32654865 - L1_Rod LINE L1 -2614 3233 3017 4 1476 316 312 89 81 chr6 116862242 116862345 -32654692 - L1_Mur3 LINE L1 -427 5453 5345 4 1476 3234 71 10 0 chr6 116862345 116862741 -32654296 - MTB LTR MaLR 0 400 1 4 1476 316 312 89 81 chr6 116862741 116862895 -32654142 - L1_Mur3 LINE L1 -536 5344 5194 4 1476 954 296 57 22 chr6 116862941 116863432 -32653605 - L1MA4 LINE L1 -1340 4803 4296 4 1476 3905 101 80 75 chr6 116863451 116864135 -32652902 - RMER19A LTR ERVK -49 688 1 4 1476 1108 272 205 3 chr6 116864135 116864937 -32652100 - L1MA4 LINE L1 -1607 4273 3299 4 1476 306 0 0 0 chr6 116864937 116864971 -32652066 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 1476 725 282 288 5 chr6 116864971 116865164 -32651873 - L1MA4 LINE L1 -2842 3298 3043 4 1476 251 247 43 33 chr6 116865207 116865299 -32651738 - L1MD1 LINE L1 -245 5997 5905 4 1476 518 270 109 6 chr6 116865312 116865487 -32651550 - L1MB7 LINE L1 -9 6175 5983 4 1476 225 313 104 0 chr6 116865574 116865737 -32651300 + L1MCa LINE L1 2045 2224 -4284 4 1476 368 262 48 0 chr6 116867178 116867262 -32649775 + B1F1 SINE Alu 21 108 -41 4 1476 23 68 0 0 chr6 116868486 116868530 -32648507 + AT_rich Low_complexity Low_complexity 1 44 0 4 1476 188 178 55 0 chr6 116868531 116868604 -32648433 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 4 1476 249 244 36 24 chr6 116869372 116869456 -32647581 - L1M5 LINE L1 -916 5230 5146 4 1476 1290 283 35 15 chr6 116869506 116869911 -32647126 - Lx8 LINE L1 -251 7222 6810 4 1476 270 312 18 9 chr6 116869911 116870024 -32647013 + G-rich Low_complexity Low_complexity 5 118 0 4 1476 685 296 32 36 chr6 116870040 116870261 -32646776 - Lx8 LINE L1 -680 6793 6574 4 1476 649 215 83 7 chr6 116870310 116870455 -32646582 - Lx8 LINE L1 -1006 6467 6312 4 1476 1476 277 50 15 chr6 116870465 116870945 -32646092 - Lx8 LINE L1 -612 6861 6365 4 1476 423 0 0 0 chr6 116871411 116871458 -32645579 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1476 27 0 0 0 chr6 116873049 116873076 -32643961 + AT_rich Low_complexity Low_complexity 1 27 0 4 1476 258 32 0 0 chr6 116873402 116873433 -32643604 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 4 1476 321 291 35 52 chr6 116874068 116874108 -32642929 + PB1D10 SINE Alu 3 43 -74 4 1476 1193 240 214 0 chr6 116874108 116874416 -32642621 + ORR1D1 LTR MaLR 1 374 0 4 1476 321 291 35 52 chr6 116874416 116874491 -32642546 + PB1D10 SINE Alu 44 116 -1 4 1476 2107 148 3 3 chr6 116874667 116874978 -32642059 - RLTR10E LTR ERVK 0 311 1 4 1476 323 345 162 24 chr6 116875126 116875423 -32641614 - MLT1G LTR MaLR -252 339 2 4 1476 1182 89 0 14 chr6 116875537 116875685 -32641352 - B1_Mus1 SINE Alu -1 147 2 4 1476 220 307 88 66 chr6 116876051 116876187 -32640850 + MIRb SINE MIR 78 216 -52 4 1476 878 266 89 8 chr6 116876466 116876701 -32640336 - B4A SINE B4 -8 284 31 4 1476 36234 35 0 0 chr6 116876701 116882139 -32634898 + L1Md_Gf LINE L1 54 5589 -297 4 1476 9478 9 0 0 chr6 116882139 116883135 -32633902 + L1Md_T LINE L1 5587 6582 0 4 1476 36234 42 0 1 chr6 116883135 116883150 -32633887 + L1Md_Gf LINE L1 5590 5603 -283 4 1476 1109 44 0 0 chr6 116883286 116883423 -32633614 + B1_Mus2 SINE Alu 10 146 -1 4 1476 206 180 16 0 chr6 116883424 116883485 -32633552 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 1476 185 347 26 26 chr6 116883494 116883571 -32633466 - L2a LINE L2 -12 3414 3338 4 1476 922 106 106 0 chr6 116883606 116883738 -32633299 + B1_Mus2 SINE Alu 2 147 0 4 1476 242 256 79 34 chr6 116883762 116883851 -32633186 + MLT1A1 LTR MaLR 4 96 -312 4 1476 290 247 11 56 chr6 116884010 116884100 -32632937 + MLT1A1 LTR MaLR 319 404 -4 4 1476 180 77 0 0 chr6 116884268 116884294 -32632743 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1476 434 224 201 36 chr6 116884543 116884682 -32632355 + RSINE1 SINE B4 4 165 0 4 1476 295 305 0 0 chr6 116884693 116884775 -32632262 + (CA)n Simple_repeat Simple_repeat 2 83 0 4 1476 366 211 0 0 chr6 116885733 116885837 -32631200 + A-rich Low_complexity Low_complexity 1 104 0 4 1476 369 182 0 0 chr6 116885868 116885967 -32631070 + GA-rich Low_complexity Low_complexity 2 100 0 4 1476 1241 15 0 0 chr6 116885990 116886123 -32630914 + B1_Mus2 SINE Alu 2 134 -13 5 1476 356 0 0 22 chr6 116886123 116886168 -32630869 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 5 1476 2233 149 20 77 chr6 116886538 116886939 -32630098 + ORR1C1 LTR MaLR 1 378 0 5 1476 498 321 7 7 chr6 116886976 116887114 -32629923 + B4 SINE B4 1 138 -154 5 1476 8577 28 10 0 chr6 116887168 116888470 -32628567 - L1Md_F2 LINE L1 -12 6570 5256 5 1476 599 109 0 21 chr6 116888527 116888621 -32628416 - B1_Mur1 SINE Alu 0 149 58 5 1476 351 235 25 0 chr6 116888973 116889054 -32627983 + B3A SINE B2 25 107 -91 5 1476 656 124 91 23 chr6 116889623 116889755 -32627282 + URR1B DNA MER1_type 85 225 0 5 1476 277 324 34 27 chr6 116890130 116890279 -32626758 + MER33 DNA MER1_type 175 324 0 5 1476 747 30 0 29 chr6 116890308 116890411 -32626626 + B1_Mm SINE Alu 48 147 0 5 1476 244 64 43 0 chr6 116890411 116890458 -32626579 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 5 1476 198 0 0 0 chr6 116890465 116890487 -32626550 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 5 1476 676 291 0 85 chr6 116892081 116892363 -32624674 + Tigger5 DNA MER2_type 2145 2402 -4 5 1476 207 310 12 12 chr6 116892368 116892453 -32624584 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 1476 713 83 9 9 chr6 116892470 116892579 -32624458 - ORR1B1 LTR MaLR -26 368 260 5 1476 799 161 233 0 chr6 116893274 116893454 -32623583 - URR1A DNA MER1_type 0 226 5 5 1476 387 288 114 44 chr6 116894134 116894406 -32622631 + L1MD LINE L1 4846 5136 -1010 5 1476 575 268 54 21 chr6 116894516 116894814 -32622223 - L1MD LINE L1 -886 5473 5167 5 1476 720 280 89 32 chr6 116895112 116895532 -32621505 + L1MA5A LINE L1 5572 6018 -282 5 1476 228 299 74 44 chr6 116895762 116895909 -32621128 + MIRc SINE MIR 7 162 -106 5 1476 274 298 32 0 chr6 116898341 116898435 -32618602 - MLT1A1 LTR MaLR -16 392 296 5 1476 313 344 32 16 chr6 116898756 116898880 -32618157 + L1MEf LINE L1 363 488 -6846 5 1476 261 326 88 36 chr6 116898951 116899145 -32617892 + L1MEf LINE L1 613 816 -6518 5 1476 388 317 119 39 chr6 116900066 116900401 -32616636 + L1MEf LINE L1 1386 1895 -5207 5 1476 918 67 0 94 chr6 116900401 116900517 -32616520 + L1_Mus2 LINE L1 6431 6546 -20 5 1476 1413 52 0 45 chr6 116900517 116900677 -32616360 + B2_Mm1a SINE B2 2 160 -33 5 1476 207 0 0 0 chr6 116900677 116900700 -32616337 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 5 1476 1413 52 0 45 chr6 116900700 116900739 -32616298 + B2_Mm1a SINE B2 161 192 -1 5 1476 918 67 0 94 chr6 116900739 116900771 -32616266 + L1_Mus2 LINE L1 6547 6565 -1 5 1476 388 327 143 65 chr6 116900771 116901046 -32615991 + L1MEf LINE L1 1896 2214 -4888 5 1476 629 311 142 17 chr6 116902240 116902720 -32614317 + L1_Rod LINE L1 1470 2009 -3838 5 1476 616 236 9 0 chr6 116902750 116902976 -32614061 + (TA)n Simple_repeat Simple_repeat 1 228 0 5 1476 264 200 0 0 chr6 116902976 116903031 -32614006 + (CGTG)n Simple_repeat Simple_repeat 1 55 0 5 1476 333 275 64 0 chr6 116903033 116903174 -32613863 + L1_Mur3 LINE L1 4377 4554 -1586 5 1476 216 0 0 0 chr6 116903519 116903543 -32613494 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1476 597 322 74 78 chr6 116904126 116904225 -32612812 + Lx8 LINE L1 6127 6232 -1412 5 1476 1268 179 14 0 chr6 116904225 116904437 -32612600 - B3 SINE B2 0 216 2 5 1476 1943 322 83 57 chr6 116904437 116905537 -32611500 + Lx8 LINE L1 6201 7234 -239 5 1476 854 122 0 37 chr6 116905554 116905741 -32611296 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1476 1383 274 88 35 chr6 116906012 116906787 -32610250 + L1MEf LINE L1 2970 3785 -3221 5 1476 895 230 42 17 chr6 116907603 116907842 -32609195 + L1MA4 LINE L1 5318 5562 -738 5 1476 599 136 9 0 chr6 116907906 116908016 -32609021 + (TG)n Simple_repeat Simple_repeat 1 111 0 5 1476 791 315 38 11 chr6 116908020 116908392 -32608645 + L1MA4 LINE L1 5651 6032 -268 5 1476 197 325 96 38 chr6 116909368 116909525 -32607512 + MIRb SINE MIR 93 258 -10 5 1476 207 354 0 0 chr6 116910241 116910320 -32606717 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1476 27 29 0 0 chr6 116911169 116911203 -32605834 + AT_rich Low_complexity Low_complexity 1 34 0 5 1476 533 282 17 39 chr6 116911251 116911432 -32605605 - B3 SINE B2 -13 203 27 5 1476 22 0 0 0 chr6 116911448 116911470 -32605567 + AT_rich Low_complexity Low_complexity 1 22 0 5 1476 21 57 0 0 chr6 116911485 116911520 -32605517 + AT_rich Low_complexity Low_complexity 1 35 0 5 1476 313 158 313 12 chr6 116911680 116911763 -32605274 + PB1D9 SINE Alu 2 109 -11 5 1476 215 141 69 14 chr6 116911763 116911835 -32605202 + GA-rich Low_complexity Low_complexity 1 76 0 5 1476 37 23 0 0 chr6 116913559 116913603 -32603434 + AT_rich Low_complexity Low_complexity 1 44 0 5 1476 27 73 0 0 chr6 116914442 116914497 -32602540 + AT_rich Low_complexity Low_complexity 1 55 0 5 1476 245 259 23 12 chr6 116914738 116914824 -32602213 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 1476 533 279 220 66 chr6 116914835 116915303 -32601734 - L1MA4 LINE L1 -370 5930 5391 5 184 1224 311 67 50 chr6 116915701 116916547 -32600490 - L1MA4 LINE L1 -840 5303 4420 5 1477 222 37 0 0 chr6 116919344 116919371 -32597666 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1477 279 0 0 0 chr6 116921436 116921467 -32595570 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1477 270 330 114 11 chr6 116921715 116921899 -32595138 - Lx8 LINE L1 -30 7443 7241 5 1477 861 303 106 39 chr6 116921895 116922310 -32594727 - Lx8 LINE L1 -845 6628 6186 5 1477 473 298 44 61 chr6 116922331 116922680 -32594357 - Lx8 LINE L1 -1560 6084 5728 5 1477 180 0 0 0 chr6 116922701 116922721 -32594316 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1477 509 216 18 26 chr6 116922806 116922920 -32594117 - B1_Mur1 SINE Alu -1 148 36 5 1477 352 244 47 31 chr6 116923137 116923264 -32593773 + RMER15 LTR ERVL 1 129 -446 5 1477 4811 161 89 74 chr6 116923315 116924365 -32592672 - RMER1B Other Other 0 1066 2 5 1477 859 294 35 14 chr6 116924403 116924689 -32592348 + RMER15 LTR ERVL 284 575 0 5 1477 206 121 0 0 chr6 116924867 116924900 -32592137 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 5 1477 184 274 24 92 chr6 116926246 116926340 -32590697 + MIRc SINE MIR 74 158 -50 5 1477 280 246 0 0 chr6 116927525 116927590 -32589447 - MLT1J2 LTR MaLR -356 92 28 5 1477 314 138 17 0 chr6 116928362 116928420 -32588617 + (CATA)n Simple_repeat Simple_repeat 1 59 0 5 1477 448 229 31 50 chr6 116928467 116928628 -32588409 - L1MA4 LINE L1 -374 6628 6471 5 1477 537 92 0 0 chr6 116928645 116928721 -32588316 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 1477 452 275 0 24 chr6 116928721 116928844 -32588193 - RSINE1 SINE B4 -43 122 3 5 1477 491 269 93 56 chr6 116928855 116929141 -32587896 - L1_Rod LINE L1 -314 5533 5242 5 1477 339 269 86 39 chr6 116929144 116929399 -32587638 - L1MA4 LINE L1 -959 5886 5620 5 1477 271 179 12 82 chr6 116929399 116929484 -32587553 - RMER1B Other Other 0 1066 988 5 1477 323 250 10 0 chr6 116929844 116929944 -32587093 + (TAA)n Simple_repeat Simple_repeat 2 102 0 5 1477 543 132 28 160 chr6 116931245 116931389 -32585648 - B3 SINE B2 -5 211 87 5 1477 414 0 0 0 chr6 116931389 116931435 -32585602 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1477 223 104 0 40 chr6 116931590 116931640 -32585397 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 5 1477 264 314 3 16 chr6 116931813 116931937 -32585100 - L1MA4 LINE L1 -4639 2305 2197 5 1477 441 0 0 0 chr6 116933038 116933087 -32583950 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1477 759 108 0 0 chr6 116933140 116933260 -32583777 + (GGGGA)n Simple_repeat Simple_repeat 4 123 0 5 1477 312 276 0 0 chr6 116933632 116933708 -32583329 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1477 642 191 0 0 chr6 116933720 116933760 -32583277 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1477 387 0 0 0 chr6 116933760 116933803 -32583234 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1477 642 191 0 0 chr6 116933803 116933935 -32583102 + (CA)n Simple_repeat Simple_repeat 2 133 0 5 1477 249 112 0 0 chr6 116933960 116934042 -32582995 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1477 1053 150 0 0 chr6 116934543 116934723 -32582314 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1477 339 231 114 9 chr6 116934942 116935047 -32581990 - MLT1A LTR MaLR 0 374 259 5 1477 495 310 156 7 chr6 116937312 116937620 -32579417 - ORR1E LTR MaLR -2 357 4 5 1477 331 276 204 34 chr6 116937932 116938108 -32578929 + MIR SINE MIR 50 255 -7 5 1477 1683 183 56 9 chr6 116938440 116938781 -32578256 - ORR1C1 LTR MaLR -1 377 21 5 1477 438 20 0 0 chr6 116939086 116939137 -32577900 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1477 360 0 0 0 chr6 116939137 116939176 -32577861 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1477 2756 265 29 34 chr6 116939379 116939693 -32577344 + Lx8 LINE L1 6239 6562 -911 5 1477 1812 212 14 6 chr6 116939693 116940059 -32576978 + ORR1D1 LTR MaLR 2 370 -4 5 1477 2756 265 29 34 chr6 116940059 116940458 -32576579 + Lx8 LINE L1 6563 6949 -524 5 1477 337 201 95 22 chr6 116942802 116942939 -32574098 + Lx9 LINE L1 7498 7644 0 5 1477 281 330 86 80 chr6 116943531 116943844 -32573193 + MLT1A LTR MaLR 43 357 -17 5 1477 278 98 0 19 chr6 116943901 116943953 -32573084 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1477 1017 225 227 44 chr6 116943975 116944314 -32572723 + MTD LTR MaLR 21 421 0 5 1477 1486 296 97 23 chr6 116944415 116945076 -32571961 + Lx8 LINE L1 6352 7061 -412 5 1477 215 133 22 0 chr6 116945297 116945342 -32571695 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1477 1523 273 75 36 chr6 116945357 116945972 -32571065 - Lx8 LINE L1 -507 6966 6328 5 1477 438 257 35 35 chr6 116946330 116946475 -32570562 - Lx9 LINE L1 -1700 5944 5800 5 1477 3388 156 13 62 chr6 116946478 116947153 -32569884 - RLTR26 LTR ERVK 0 642 1 5 1477 1033 260 102 39 chr6 116947154 116947566 -32569471 - Lx9 LINE L1 -81 5766 5329 5 1477 330 128 109 152 chr6 116947564 116947748 -32569289 - Lx9 LINE L1 -16 7628 7453 5 1477 502 299 95 31 chr6 116947746 116948105 -32568932 - L1M2 LINE L1 -743 5400 5019 5 1477 326 313 0 25 chr6 116949960 116950078 -32566959 + GA-rich Low_complexity Low_complexity 4 118 0 5 1477 791 169 0 22 chr6 116950471 116950652 -32566385 + GA-rich Low_complexity Low_complexity 2 178 0 5 1477 909 28 0 0 chr6 116951320 116951428 -32565609 + (GA)n Simple_repeat Simple_repeat 2 109 0 5 1477 36384 65 8 6 chr6 116952319 116958257 -32558780 - L1Md_F2 LINE L1 -2 6580 631 5 1477 664 278 100 9 chr6 116958305 116958534 -32558503 + B4 SINE B4 1 250 -42 5 1477 396 0 0 0 chr6 116958535 116958579 -32558458 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1477 708 124 0 0 chr6 116958579 116958716 -32558321 + (GA)n Simple_repeat Simple_repeat 1 137 0 5 1477 348 148 0 0 chr6 116958732 116958793 -32558244 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 5 1477 333 297 27 0 chr6 116958829 116958940 -32558097 + PB1D10 SINE Alu 2 115 -2 6 1477 35 0 0 0 chr6 116960946 116960981 -32556056 + AT_rich Low_complexity Low_complexity 1 35 0 6 1477 25 0 0 0 chr6 116961539 116961564 -32555473 + AT_rich Low_complexity Low_complexity 1 25 0 6 1477 645 246 138 24 chr6 116962052 116962298 -32554739 + MTD LTR MaLR 55 328 -91 6 1477 265 255 46 0 chr6 116962778 116962859 -32554178 - L1MC LINE L1 -898 5248 5165 6 1477 261 289 75 19 chr6 116963101 116963260 -32553777 + L1MD LINE L1 5005 5172 -974 6 1477 228 375 0 0 chr6 116964306 116964386 -32552651 - PB1D10 SINE Alu -10 107 28 6 1477 449 305 79 0 chr6 116964474 116964638 -32552399 + B3A SINE B2 1 177 -21 6 1477 300 111 0 0 chr6 116965176 116965221 -32551816 + (CTTA)n Simple_repeat Simple_repeat 2 46 0 6 1477 316 345 0 0 chr6 116965404 116965523 -32551514 - MIR SINE MIR -34 228 110 6 1477 5475 130 74 10 chr6 116967195 116968099 -32548938 + Lx2B LINE L1 6037 6998 -2 6 1477 612 40 0 0 chr6 116968566 116968641 -32548396 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1477 390 295 44 13 chr6 116969800 116969958 -32547079 + MER3 DNA MER1_type 1 163 -46 6 1477 408 20 0 0 chr6 116969962 116970011 -32547026 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1477 339 25 0 0 chr6 116970011 116970050 -32546987 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1477 1821 222 35 2 chr6 116970424 116970822 -32546215 + MTD LTR MaLR 1 411 -8 6 1477 201 39 0 0 chr6 116971799 116971825 -32545212 + (TTG)n Simple_repeat Simple_repeat 1 26 0 6 1477 810 58 0 0 chr6 116972431 116972535 -32544502 + (GAAA)n Simple_repeat Simple_repeat 4 107 0 6 1477 222 377 18 36 chr6 116972998 116973108 -32543929 + RSINE1 SINE B4 40 147 -18 6 1477 486 0 0 0 chr6 116973147 116973201 -32543836 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1477 666 100 0 0 chr6 116973260 116973360 -32543677 + (TCCC)n Simple_repeat Simple_repeat 1 100 0 6 1477 191 36 0 35 chr6 116973466 116973495 -32543542 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 6 1477 335 195 12 35 chr6 116973720 116973805 -32543232 + PB1D10 SINE Alu 27 109 -8 6 1477 550 282 141 18 chr6 116973995 116974378 -32542659 - L1MCa LINE L1 -2591 3730 3301 6 1477 236 277 26 72 chr6 116974394 116974546 -32542491 - L1MCa LINE L1 -3133 3188 3044 6 1477 311 291 75 19 chr6 116974692 116974853 -32542184 - L1MCa LINE L1 -4250 2258 2089 6 1477 247 216 245 0 chr6 116974910 116975012 -32542025 - RMER1C Other Other -157 1185 1059 6 1477 3526 241 46 17 chr6 116974941 116975833 -32541204 - Lx8 LINE L1 -217 7256 6339 6 1477 723 295 104 20 chr6 116975835 116976239 -32540798 - L1_Mur3 LINE L1 -750 5130 4693 6 1477 461 290 22 37 chr6 116976246 116976382 -32540655 + B4A SINE B4 152 285 -7 6 1477 231 262 35 12 chr6 116976451 116976526 -32540511 - L1MCa LINE L1 -4682 1826 1753 6 1477 392 55 18 0 chr6 116976526 116976581 -32540456 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1477 2500 279 142 12 chr6 116976581 116977738 -32539299 - L1MCa LINE L1 -4756 1752 444 6 1477 552 15 0 0 chr6 116978998 116979063 -32537974 + (CCTAT)n Simple_repeat Simple_repeat 2 66 0 6 1477 236 332 92 50 chr6 116979302 116979540 -32537497 + Tigger5 DNA MER2_type 701 948 -1458 6 1477 261 119 0 0 chr6 116979801 116979843 -32537194 + (TCC)n Simple_repeat Simple_repeat 3 44 0 6 1477 714 212 17 40 chr6 116979854 116980031 -32537006 - Lx6 LINE L1 -5 7455 7283 6 1477 183 42 0 0 chr6 116980769 116980793 -32536244 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1477 399 94 235 0 chr6 116981161 116981246 -32535791 - RMER1B Other Other -3 1063 959 6 1477 255 157 0 0 chr6 116984166 116984217 -32532820 + (TTA)n Simple_repeat Simple_repeat 3 53 0 6 1477 9290 152 31 2 chr6 116984393 116986373 -32530664 + Lx2B LINE L1 798 2842 -3044 6 1477 530 135 82 10 chr6 116986370 116986467 -32530570 + Lx2B LINE L1 5285 5388 -489 6 1477 1431 155 81 13 chr6 116986458 116986591 -32530446 + Lx2B LINE L1 5866 6011 -989 6 1477 423 0 0 0 chr6 116986591 116986638 -32530399 + (TAA)n Simple_repeat Simple_repeat 2 48 0 6 1477 1431 155 81 13 chr6 116986638 116986812 -32530225 + Lx2B LINE L1 6012 6192 -808 6 1477 1741 197 61 3 chr6 116986814 116987024 -32530013 + Lx2B LINE L1 6656 6865 -135 6 1477 279 0 0 0 chr6 116987024 116987055 -32529982 + (TGGG)n Simple_repeat Simple_repeat 3 33 0 6 1477 1741 197 61 3 chr6 116987055 116987170 -32529867 + Lx2B LINE L1 6866 6998 -2 6 1477 504 126 0 0 chr6 116987407 116987494 -32529543 + (TCC)n Simple_repeat Simple_repeat 2 88 0 6 1477 403 319 0 43 chr6 116987495 116987659 -32529378 - Lx6 LINE L1 -26 7434 7278 6 1477 244 238 66 47 chr6 116987652 116987758 -32529279 - L1MB4 LINE L1 -5573 1034 927 6 1477 1217 55 0 0 chr6 116987763 116987909 -32529128 - B1_Mus2 SINE Alu 0 147 2 6 1477 540 301 108 17 chr6 116987934 116988231 -32528806 - L1MB4 LINE L1 -5762 845 522 6 1477 2169 160 17 19 chr6 116988313 116988728 -32528309 - MTC LTR MaLR -7 414 1 6 1477 210 227 23 0 chr6 116988728 116988772 -32528265 - ID4 SINE ID -38 45 1 6 1477 1646 246 29 25 chr6 116989797 116990246 -32526791 + L1_Mur3 LINE L1 2506 2956 -2924 6 1477 420 318 91 71 chr6 116990245 116990821 -32526216 + L1M4 LINE L1 3656 4260 -1886 6 1477 3393 71 5 2 chr6 116990821 116991260 -32525777 + L1_Mus1 LINE L1 6127 6566 -1 6 1477 420 318 91 71 chr6 116991260 116991559 -32525478 + L1M4 LINE L1 4261 4549 -1597 6 1477 351 205 9 35 chr6 116991595 116991711 -32525326 + GA-rich Low_complexity Low_complexity 2 114 0 6 1477 433 329 12 51 chr6 116991714 116991967 -32525070 + L1MEc LINE L1 2212 2454 -3946 6 1477 258 290 32 11 chr6 116991971 116992065 -32524972 + L1M4 LINE L1 5650 5745 -417 6 1477 271 0 51 0 chr6 116992383 116992422 -32524615 + (ATG)n Simple_repeat Simple_repeat 3 43 0 6 1477 459 0 0 0 chr6 116992424 116992475 -32524562 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1477 202 235 25 0 chr6 116992880 116992961 -32524076 + GA-rich Low_complexity Low_complexity 2 84 0 6 1477 994 210 339 10 chr6 116993394 116993807 -32523230 - RMER15 LTR ERVL 0 575 27 6 1477 228 281 0 0 chr6 116993854 116993911 -32523126 - RMER15 LTR ERVL -515 60 4 6 1477 332 234 52 0 chr6 116995348 116995425 -32521612 + ID4 SINE ID 3 83 0 6 1477 1807 192 104 0 chr6 116996660 116997014 -32520023 - ORR1B1 LTR MaLR -3 391 1 6 1477 618 14 0 0 chr6 116997162 116997233 -32519804 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 1477 5406 84 27 4 chr6 116997262 116998002 -32519035 - L1_Mus4 LINE L1 0 6636 5880 6 1477 21 0 0 0 chr6 117003322 117003343 -32513694 + AT_rich Low_complexity Low_complexity 1 21 0 1 1477 611 152 9 0 chr6 117003343 117003455 -32513582 + (CA)n Simple_repeat Simple_repeat 2 114 0 2 1477 302 0 26 0 chr6 117003467 117003505 -32513532 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1477 297 0 0 0 chr6 117003505 117003537 -32513500 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1477 330 123 0 0 chr6 117004132 117004189 -32512848 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1477 257 273 45 0 chr6 117004189 117004277 -32512760 - L1MA4 LINE L1 -368 5932 5841 6 1477 190 386 96 16 chr6 117004997 117005300 -32511737 + L2a LINE L2 3078 3404 -22 7 1477 270 216 12 98 chr6 117005944 117006026 -32511011 + MER31A LTR ERV1 1 75 -410 8 1477 211 200 0 0 chr6 117006085 117006120 -32510917 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1477 495 309 98 44 chr6 117007888 117008479 -32508558 + L1ME1 LINE L1 5195 5826 -353 1 1477 334 360 81 22 chr6 117008536 117008758 -32508279 - MLT2B4 LTR ERVL -171 385 151 1 1477 246 227 58 67 chr6 117008928 117009032 -32508005 + L1ME1 LINE L1 5838 5940 -419 1 1477 437 267 0 11 chr6 117009377 117009559 -32507478 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1477 388 227 7 32 chr6 117009637 117009792 -32507245 + (CA)n Simple_repeat Simple_repeat 1 151 0 1 1477 352 338 13 7 chr6 117009801 117009956 -32507081 + L1ME1 LINE L1 6138 6293 -66 1 1477 237 363 44 0 chr6 117011903 117012085 -32504952 + L1ME1 LINE L1 6666 6855 -1140 1 1477 1256 153 23 0 chr6 117013221 117013436 -32503601 - URR1B DNA MER1_type 0 225 6 1 1477 234 0 0 0 chr6 117015843 117015869 -32501168 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1477 522 83 0 0 chr6 117016748 117016820 -32500217 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1477 274 268 7 104 chr6 117016866 117017020 -32500017 + MLT1A1 LTR MaLR 268 406 -2 1 1477 2580 86 3 0 chr6 117019282 117019608 -32497429 + ORR1A2 LTR MaLR 1 327 0 1 1477 658 251 48 0 chr6 117020721 117020909 -32496128 - B3 SINE B2 0 216 20 1 1477 969 275 178 20 chr6 117023410 117024094 -32492943 + L1MD LINE L1 4253 5044 -1102 2 1477 796 271 10 0 chr6 117024100 117024299 -32492738 + B3 SINE B2 3 203 -13 2 1477 328 246 91 36 chr6 117024410 117024500 -32492537 + L1MB3 LINE L1 5561 5671 -508 2 1477 1586 37 21 0 chr6 117024500 117024688 -32492349 - B2_Mm1a SINE B2 -1 192 1 2 1477 328 276 101 61 chr6 117024688 117024950 -32492087 + L1MB3 LINE L1 5672 5957 -285 2 1477 2753 287 52 50 chr6 117025021 117026062 -32490975 - Lx8 LINE L1 -99 7374 6332 2 1477 844 276 64 56 chr6 117026062 117026507 -32490530 - Lx8 LINE L1 -1513 5960 5479 2 1477 1109 303 49 48 chr6 117026547 117027136 -32489901 - L1_Mur3 LINE L1 -3553 2327 1467 2 1477 360 0 0 0 chr6 117027136 117027176 -32489861 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1477 233 301 43 67 chr6 117027176 117027213 -32489824 - L1_Mur3 LINE L1 -1041 1466 1431 2 1477 1206 134 38 0 chr6 117027263 117027449 -32489588 - B2_Mm2 SINE B2 -2 193 1 2 1477 705 132 0 0 chr6 117027887 117028008 -32489029 + (TTTC)n Simple_repeat Simple_repeat 1 121 0 2 1477 308 219 12 0 chr6 117028878 117028960 -32488077 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1477 436 262 181 6 chr6 117028977 117029170 -32487867 + L1MB3 LINE L1 5783 6001 -173 2 1477 3245 73 0 0 chr6 117029170 117029568 -32487469 - MTB LTR MaLR 0 400 3 3 1477 318 288 167 41 chr6 117029568 117029595 -32487442 + L1MB3 LINE L1 6002 6031 -143 2 1477 1164 226 77 99 chr6 117029605 117029969 -32487068 - MTE2a LTR MaLR -14 365 10 3 1477 1887 178 11 48 chr6 117033193 117033566 -32483471 + ORR1B2 LTR MaLR 1 359 -8 3 1477 357 265 19 19 chr6 117033947 117034051 -32482986 + PB1D10 SINE Alu 12 115 -2 3 1477 1143 22 0 0 chr6 117034051 117034185 -32482852 + (GGGA)n Simple_repeat Simple_repeat 4 137 0 3 1477 483 18 0 0 chr6 117034800 117034856 -32482181 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 1477 1869 245 78 21 chr6 117036231 117036811 -32480226 + RCHARR1 DNA MER1_type 9 621 -353 3 1477 246 148 185 0 chr6 117036843 117036897 -32480140 + L1M2 LINE L1 5775 5838 -462 3 1477 21 0 0 0 chr6 117037180 117037201 -32479836 + AT_rich Low_complexity Low_complexity 1 21 0 3 1477 37157 67 1 25 chr6 117037202 117043322 -32473715 + L1Md_T LINE L1 99 5586 -297 3 1477 8179 56 0 0 chr6 117043322 117044318 -32472719 + L1Md_T LINE L1 5587 6582 0 3 1477 33 25 0 0 chr6 117044318 117044358 -32472679 + AT_rich Low_complexity Low_complexity 1 40 0 4 1477 208 137 19 19 chr6 117044429 117044481 -32472556 + (CCCCG)n Simple_repeat Simple_repeat 3 54 0 4 1477 679 303 81 45 chr6 117045104 117045571 -32471466 + L1MB7 LINE L1 4306 4789 -1357 4 1477 795 173 83 0 chr6 117045676 117045832 -32471205 - B3 SINE B2 -10 206 38 4 1477 2553 171 96 42 chr6 117045850 117046415 -32470622 - RMER1B Other Other 0 1066 58 4 1477 1064 289 32 51 chr6 117046473 117046930 -32470107 - L1_Rod LINE L1 0 5847 5421 4 184 1398 290 70 58 chr6 117047063 117047838 -32469199 + L1MB7 LINE L1 5382 6165 -19 4 1478 1466 237 16 16 chr6 117047856 117048173 -32468864 + Lx6 LINE L1 7140 7456 -4 4 1478 261 214 154 0 chr6 117048193 117048310 -32468727 - L1MA7 LINE L1 -7 6284 6150 4 1478 306 295 16 29 chr6 117048907 117049067 -32467970 - MLT1A LTR MaLR -216 174 10 4 1478 468 314 64 0 chr6 117050648 117050820 -32466217 + MER21B LTR ERV1 1 183 -680 4 1478 483 336 97 59 chr6 117051169 117051457 -32465580 + RMER15 LTR ERVL 220 518 -57 5 1478 543 309 72 5 chr6 117051985 117052180 -32464857 + RMER15-int LTR ERVL 736 943 -4056 5 1478 783 213 18 18 chr6 117052246 117052413 -32464624 + RMER15-int LTR ERVL 1041 1207 -3792 5 1478 835 306 71 25 chr6 117052503 117052746 -32464291 + RMER15-int LTR ERVL 1387 1633 -3366 5 1478 227 29 0 54 chr6 117052746 117052783 -32464254 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 5 1478 835 306 71 25 chr6 117052783 117052904 -32464133 + RMER15-int LTR ERVL 1634 1767 -3232 5 1478 1042 270 42 70 chr6 117053184 117053586 -32463451 + RMER15-int LTR ERVL 4603 4993 -6 5 1478 683 341 86 3 chr6 117053722 117054025 -32463012 + RMER15 LTR ERVL 246 573 -2 5 1478 420 302 122 85 chr6 117054036 117054307 -32462730 + MER21B LTR ERV1 518 798 -65 5 1478 854 143 6 0 chr6 117054855 117055030 -32462007 + (TG)n Simple_repeat Simple_repeat 2 177 0 5 1478 243 146 0 0 chr6 117055053 117055094 -32461943 + (CATG)n Simple_repeat Simple_repeat 2 42 0 5 1478 499 312 105 24 chr6 117056301 117056596 -32460441 + L1MB8 LINE L1 5855 6173 -5 5 1478 192 40 0 0 chr6 117057719 117057744 -32459293 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 5 1478 3191 48 0 0 chr6 117058463 117058841 -32458196 + L1_Mus1 LINE L1 6190 6567 0 5 1478 204 205 0 0 chr6 117058857 117058896 -32458141 + GA-rich Low_complexity Low_complexity 2 40 0 5 1478 290 190 69 0 chr6 117059878 117059936 -32457101 + RSINE1 SINE B4 1 62 -103 5 1478 21 0 0 0 chr6 117059936 117059957 -32457080 + AT_rich Low_complexity Low_complexity 1 21 0 6 1478 1082 169 93 9 chr6 117059957 117060172 -32456865 - Lx4B LINE L1 -9 7049 6817 6 1478 2358 194 67 36 chr6 117060175 117060698 -32456339 - RLTR20A LTR ERVK 0 541 3 6 1478 3129 174 24 7 chr6 117060698 117061241 -32455796 - Lx4B LINE L1 -236 6822 6271 6 1478 358 331 149 70 chr6 117061442 117061744 -32455293 - ORR1E LTR MaLR -23 336 11 6 1478 3156 162 65 90 chr6 117062195 117062893 -32454144 - RMER19B LTR ERVK -222 680 1 6 1478 420 20 0 0 chr6 117062920 117062969 -32454068 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1478 326 275 183 83 chr6 117063043 117063209 -32453828 - LTR40a LTR ERVL -266 253 59 6 1478 243 0 0 0 chr6 117063209 117063236 -32453801 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1478 326 275 183 83 chr6 117063236 117063299 -32453738 - LTR40a LTR ERVL -461 58 1 6 1478 306 290 96 45 chr6 117064138 117064315 -32452722 + L1MB4 LINE L1 5573 5758 -425 6 1478 304 257 0 0 chr6 117064426 117064500 -32452537 + L1MB4 LINE L1 5795 5868 -312 6 1478 215 229 33 0 chr6 117066013 117066074 -32450963 + C-rich Low_complexity Low_complexity 5 67 0 6 1478 503 248 19 28 chr6 117066950 117067058 -32449979 + PB1D10 SINE Alu 11 117 0 7 1478 238 184 0 58 chr6 117068520 117068572 -32448465 + MER5A DNA MER1_type 113 161 -28 7 1478 316 346 171 11 chr6 117069544 117069731 -32447306 - HAL1-3A_ME LINE L1 -658 2200 1984 7 1478 249 278 0 14 chr6 117069890 117069963 -32447074 - B3 SINE B2 -141 75 4 7 1478 240 86 0 0 chr6 117070411 117070446 -32446591 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1478 873 208 61 20 chr6 117070504 117070700 -32446337 - B3 SINE B2 0 216 13 7 1478 272 329 12 0 chr6 117070629 117070711 -32446326 - RSINE1 SINE B4 -80 85 3 7 1478 468 0 0 0 chr6 117070806 117070858 -32446179 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1478 494 265 54 13 chr6 117070967 117071116 -32445921 + Lx8 LINE L1 7119 7273 -200 7 1478 277 212 55 66 chr6 117071926 117072017 -32445020 - L1MD3 LINE L1 -1144 6851 6762 7 1478 1736 269 37 54 chr6 117072021 117072594 -32444443 + Lx9 LINE L1 6563 7125 -519 8 1478 311 308 65 74 chr6 117072605 117073051 -32443986 - L1MCa LINE L1 -2900 3421 2980 8 1478 1559 129 8 27 chr6 117073076 117073339 -32443698 + L1_Mus3 LINE L1 6381 6638 0 8 1478 263 312 54 36 chr6 117073396 117073562 -32443475 - L1MCa LINE L1 -3774 2547 2379 8 1478 269 306 26 51 chr6 117073641 117073758 -32443279 - PB1D10 SINE Alu 0 117 4 8 1478 690 150 0 0 chr6 117073760 117073880 -32443157 + (TCC)n Simple_repeat Simple_repeat 3 122 0 8 1478 324 289 210 19 chr6 117073912 117074074 -32442963 - L1MCa LINE L1 -4153 2355 2163 8 1478 243 0 0 0 chr6 117077279 117077306 -32439731 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1478 423 0 0 0 chr6 117077306 117077352 -32439685 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 1478 396 322 142 19 chr6 117077450 117077736 -32439301 - MER44A DNA MER2_type -7 332 20 8 1478 208 271 65 91 chr6 117083166 117083243 -32433794 + MIRb SINE MIR 50 124 -144 8 1478 1037 285 57 0 chr6 117083611 117083909 -32433128 + MER2 DNA MER2_type 29 343 -2 8 1478 2286 160 64 5 chr6 117085325 117085715 -32431322 - MTC LTR MaLR 0 421 9 9 1478 201 74 0 0 chr6 117085847 117085874 -32431163 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1478 206 139 0 44 chr6 117086302 117086347 -32430690 + CT-rich Low_complexity Low_complexity 4 46 0 9 1478 409 299 120 58 chr6 117087180 117087516 -32429521 + MLT1C LTR MaLR 45 390 0 9 1478 326 339 67 59 chr6 117088265 117088503 -32428534 + L1MCc LINE L1 81 320 -6103 9 1478 254 325 78 17 chr6 117088628 117088744 -32428293 - RMER15 LTR ERVL 0 575 453 9 1478 2809 290 43 34 chr6 117088950 117089786 -32427251 - RMER15-int LTR ERVL -1 4998 4155 9 1478 777 351 97 50 chr6 117089916 117090378 -32426659 - RMER15-int LTR ERVL -2775 2224 1741 9 1478 182 296 115 69 chr6 117090396 117090483 -32426554 + MIRm SINE MIR 2 92 -184 9 1478 2949 283 85 33 chr6 117090496 117091200 -32425837 - RMER15-int LTR ERVL -3385 1614 882 9 1478 1537 216 70 20 chr6 117091200 117091357 -32425680 + ORR1D1 LTR MaLR 2 164 -210 9 1478 180 0 0 0 chr6 117091357 117091377 -32425660 + (TC)n Simple_repeat Simple_repeat 1 20 0 9 1478 1537 216 70 20 chr6 117091377 117091574 -32425463 + ORR1D1 LTR MaLR 165 373 -1 9 1478 2949 283 85 33 chr6 117091574 117091880 -32425157 - RMER15-int LTR ERVL -4118 881 551 9 1478 381 306 52 126 chr6 117091931 117092551 -32424486 - L1M4c LINE L1 -3367 3478 2905 9 1478 1454 246 75 32 chr6 117092634 117093126 -32423911 - RLTR11A2 LTR ERVK -14 513 1 1 1478 300 333 113 30 chr6 117093128 117094022 -32423015 - L1M4c LINE L1 -3956 2893 1899 9 1478 210 162 0 0 chr6 117094274 117094311 -32422726 + T-rich Low_complexity Low_complexity 1 37 0 1 1478 21 0 0 0 chr6 117094791 117094812 -32422225 + AT_rich Low_complexity Low_complexity 1 21 0 1 1478 287 262 25 0 chr6 117095167 117095247 -32421790 + MTE2b LTR MaLR 293 374 -5 1 1478 741 243 54 105 chr6 117095502 117095796 -32421241 - Tigger7 DNA MER2_type -78 2413 2135 1 1478 351 369 217 0 chr6 117095790 117096034 -32421003 - Tigger7 DNA MER2_type -2188 303 7 1 1478 21 57 0 0 chr6 117096104 117096139 -32420898 + AT_rich Low_complexity Low_complexity 1 35 0 1 1478 229 403 30 7 chr6 117096430 117096565 -32420472 - RLTR33 LTR ERVK -42 636 499 1 1478 229 284 95 0 chr6 117097413 117097487 -32419550 + PB1D9 SINE Alu 27 107 -13 1 1478 572 91 11 0 chr6 117097500 117097588 -32419449 + (GA)n Simple_repeat Simple_repeat 2 90 0 1 1478 236 354 15 0 chr6 117097588 117097653 -32419384 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 1 1478 324 269 15 0 chr6 117097595 117097662 -32419375 + ID4 SINE ID 14 81 -2 1 1478 597 14 0 0 chr6 117097667 117097737 -32419300 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1478 514 310 16 0 chr6 117098807 117098936 -32418101 + RSINE1 SINE B4 3 133 -32 1 1478 650 78 39 15 chr6 117099180 117099310 -32417727 + (TAGA)n Simple_repeat Simple_repeat 2 134 0 1 1478 667 58 30 66 chr6 117099323 117099489 -32417548 + (TAGA)n Simple_repeat Simple_repeat 3 162 0 1 1478 189 196 0 0 chr6 117099532 117099583 -32417454 + GA-rich Low_complexity Low_complexity 1 51 0 1 1478 438 271 52 78 chr6 117100198 117100390 -32416647 + RLTR23 LTR ERV1 242 428 -2 1 1478 845 37 9 0 chr6 117101130 117101239 -32415798 + (GA)n Simple_repeat Simple_repeat 1 110 0 1 1478 499 95 0 26 chr6 117101245 117101321 -32415716 - RMER17C LTR ERVK -336 74 1 1 1478 25 31 0 0 chr6 117101328 117101360 -32415677 + AT_rich Low_complexity Low_complexity 1 32 0 1 1478 198 0 0 0 chr6 117102097 117102119 -32414918 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1478 234 308 7 143 chr6 117103929 117104069 -32412968 + MLT1K LTR MaLR 475 595 0 1 1478 244 311 40 80 chr6 117104424 117104599 -32412438 + LTR16A LTR ERVL 44 211 -240 1 1478 356 333 35 0 chr6 117104751 117104892 -32412145 + LTR16A LTR ERVL 262 407 -44 1 1478 419 336 114 52 chr6 117106002 117106310 -32410727 - ORR1E LTR MaLR -13 346 20 1 1478 1041 160 37 16 chr6 117106389 117106579 -32410458 + ORR1C2 LTR MaLR 1 194 -190 1 1478 802 150 13 0 chr6 117106579 117106732 -32410305 + CT-rich Low_complexity Low_complexity 1 155 0 1 1478 689 150 53 30 chr6 117106744 117106875 -32410162 + ORR1C2 LTR MaLR 249 382 -2 1 1478 736 277 33 0 chr6 117108442 117108626 -32408411 - B3A SINE B2 -8 190 1 1 1478 468 0 0 0 chr6 117108637 117108689 -32408348 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 1 1478 354 287 69 0 chr6 117109680 117109767 -32407270 - RSINE1 SINE B4 0 165 73 1 1478 246 75 36 36 chr6 117110953 117111008 -32406029 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 1478 295 336 21 7 chr6 117111305 117111446 -32405591 + (TGGA)n Simple_repeat Simple_repeat 4 146 0 1 1478 728 350 35 81 chr6 117111462 117111845 -32405192 + MTE2b LTR MaLR 18 396 -23 1 1478 189 0 0 0 chr6 117111845 117111866 -32405171 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1 1478 384 253 116 58 chr6 117112608 117112780 -32404257 + MER53 DNA hAT 7 188 -5 1 1478 28 0 0 0 chr6 117112824 117112852 -32404185 + AT_rich Low_complexity Low_complexity 1 28 0 1 1478 787 302 73 4 chr6 117113114 117113360 -32403677 - MER44B DNA MER2_type -287 263 1 1 1478 3954 60 0 2 chr6 117114437 117114919 -32402118 - L1_Mus1 LINE L1 0 6567 6087 1 1478 401 260 78 39 chr6 117115267 117115447 -32401590 + L1MA4 LINE L1 5662 5848 -308 1 1478 315 0 0 0 chr6 117116901 117116936 -32400101 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1478 261 0 0 0 chr6 117119989 117120018 -32397019 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1478 186 306 0 0 chr6 117121115 117121164 -32395873 - L4 LINE RTE -657 1372 1324 1 1478 207 0 0 0 chr6 117124585 117124608 -32392429 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 1478 207 0 0 0 chr6 117127106 117127129 -32389908 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1478 231 36 0 0 chr6 117129103 117129131 -32387906 + (TCCA)n Simple_repeat Simple_repeat 3 30 0 1 1478 330 332 48 65 chr6 117134141 117134370 -32382667 - Charlie12 DNA MER1_type -2247 626 402 1 1478 323 338 200 0 chr6 117134412 117134557 -32382480 - Charlie12 DNA MER1_type -2699 174 1 1 1478 567 308 28 19 chr6 117134606 117134818 -32382219 + B3 SINE B2 3 216 0 1 1478 318 87 0 0 chr6 117135246 117135292 -32381745 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 1 1478 366 23 0 0 chr6 117135298 117135341 -32381696 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1478 372 303 141 22 chr6 117135345 117135480 -32381557 - RSINE1 SINE B4 -4 161 11 1 1478 780 245 8 47 chr6 117136079 117136332 -32380705 + L1MA4 LINE L1 2968 3210 -2933 1 1478 331 298 19 32 chr6 117136352 117136508 -32380529 + L1MA4 LINE L1 4165 4318 -1822 1 1478 555 272 27 7 chr6 117136510 117136658 -32380379 + B4 SINE B4 3 153 -139 1 1478 1623 310 38 50 chr6 117136920 117137009 -32380028 + L1MA4 LINE L1 4315 4399 -1744 1 1478 2259 192 53 57 chr6 117137009 117137539 -32379498 - RLTR24 LTR ERV1 0 529 2 1 1478 1623 312 44 53 chr6 117137539 117138676 -32378361 + L1MA4 LINE L1 4368 5514 -366 1 1478 366 289 86 30 chr6 117138658 117138890 -32378147 + L1MA4 LINE L1 5694 5938 -362 1 1478 234 214 22 11 chr6 117138914 117139004 -32378033 + (TATATG)n Simple_repeat Simple_repeat 4 94 0 1 1478 1911 203 33 18 chr6 117139044 117139441 -32377596 + MTD LTR MaLR 12 414 -5 1 1478 444 19 0 0 chr6 117139868 117139921 -32377116 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1478 2444 93 0 21 chr6 117140033 117140096 -32376941 - ORR1A2 LTR MaLR 0 327 270 1 1478 1440 57 6 0 chr6 117140096 117140112 -32376925 - B2_Mm1t SINE B2 -15 178 162 1 1478 387 0 0 0 chr6 117140112 117140155 -32376882 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1478 1440 57 6 0 chr6 117140155 117140315 -32376722 - B2_Mm1t SINE B2 -32 161 2 1 1478 2444 93 0 21 chr6 117140315 117140581 -32376456 - ORR1A2 LTR MaLR -58 269 5 1 1478 535 189 8 8 chr6 117143458 117143586 -32373451 + GA-rich Low_complexity Low_complexity 3 130 0 1 1478 236 320 80 30 chr6 117146408 117146508 -32370529 - MLT1A1 LTR MaLR -303 105 1 1 1478 304 171 0 174 chr6 117146508 117146600 -32370437 + L1MDa LINE L1 2436 2511 -4122 1 1478 1047 131 60 43 chr6 117148135 117148319 -32368718 + B2_Mm2 SINE B2 1 187 -8 1 1478 638 204 281 0 chr6 117148693 117148860 -32368177 - B3 SINE B2 -1 215 2 1 1478 240 254 94 101 chr6 117148907 117149056 -32367981 - ORR1E LTR MaLR -175 184 37 1 1478 289 319 80 22 chr6 117149170 117149308 -32367729 - MER5A DNA MER1_type 0 189 44 1 1478 444 309 204 16 chr6 117149493 117149743 -32367294 + Tigger7 DNA MER2_type 9 305 -2186 1 1478 246 174 0 0 chr6 117150193 117150239 -32366798 + CT-rich Low_complexity Low_complexity 1 46 0 1 1478 318 277 47 26 chr6 117150268 117150318 -32366719 - B3A SINE B2 -11 205 152 1 1478 264 120 0 0 chr6 117150318 117150368 -32366669 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1478 318 253 33 33 chr6 117150368 117150431 -32366606 - B3A SINE B2 -45 153 89 1 1478 268 319 15 0 chr6 117150439 117150524 -32366513 - MIRc SINE MIR -42 166 81 1 1478 360 64 0 0 chr6 117150797 117150844 -32366193 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1478 258 116 0 0 chr6 117154509 117154552 -32362485 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1478 1125 121 0 0 chr6 117156409 117156583 -32360454 + (GAAA)n Simple_repeat Simple_repeat 1 174 0 1 1478 338 332 68 32 chr6 117157267 117157435 -32359602 + MLT1A LTR MaLR 227 374 0 1 1478 387 0 0 0 chr6 117158291 117158334 -32358703 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1478 3393 53 2 0 chr6 117158447 117158842 -32358195 - MTA_Mm LTR MaLR 0 396 1 1 1478 2375 163 74 115 chr6 117159387 117159943 -32357094 + RMER16 LTR ERVK 1 533 0 1 1478 360 0 0 0 chr6 117160481 117160521 -32356516 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1478 222 323 0 0 chr6 117160967 117161029 -32356008 + ID4_ SINE ID 3 64 -19 1 1478 7528 64 2 26 chr6 117161144 117162532 -32354505 - L1_Mus2 LINE L1 0 6566 5205 1 1478 3989 162 57 5 chr6 117162661 117163401 -32353636 + Lx5 LINE L1 5945 6722 -328 1 1478 225 253 0 0 chr6 117163402 117163489 -32353548 - Lx5 LINE L1 -941 6109 6023 1 1478 803 135 14 0 chr6 117163493 117163634 -32353403 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 1 1478 1738 151 19 47 chr6 117164170 117164489 -32352548 + Lx5 LINE L1 6741 7050 0 1 1478 3496 33 2 0 chr6 117164811 117165206 -32351831 - MTA_Mm LTR MaLR 0 396 1 1 1478 406 241 31 94 chr6 117165426 117165554 -32351483 + MLT2D LTR ERVL 13 132 -282 1 1478 230 296 14 14 chr6 117165631 117165703 -32351334 + ID4_ SINE ID 2 73 -10 1 1478 342 269 122 21 chr6 117166171 117166329 -32350708 + MLT2D LTR ERVL 389 560 0 1 1478 643 266 47 4 chr6 117166769 117166928 -32350109 - RSINE1 SINE B4 0 165 1 1 1478 549 0 0 0 chr6 117167345 117167406 -32349631 + (TTTTC)n Simple_repeat Simple_repeat 5 65 0 1 1478 3401 65 7 11 chr6 117167439 117167875 -32349162 - L1_Mus2 LINE L1 0 6566 6133 1 1478 294 221 22 44 chr6 117168134 117168224 -32348813 + MLT1A1 LTR MaLR 321 408 0 1 1478 392 343 67 25 chr6 117168262 117168501 -32348536 - MLT1G3 LTR MaLR -236 359 111 1 1478 245 29 29 0 chr6 117168506 117168540 -32348497 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1478 259 295 179 8 chr6 117169018 117169141 -32347896 + MER5A DNA MER1_type 21 164 -25 1 1478 348 83 0 0 chr6 117169247 117169295 -32347742 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1478 326 235 0 10 chr6 117171317 117171420 -32345617 + GA-rich Low_complexity Low_complexity 1 102 0 1 1478 180 0 0 0 chr6 117171616 117171636 -32345401 + (CTG)n Simple_repeat Simple_repeat 1 20 0 1 1478 228 163 0 0 chr6 117171634 117171677 -32345360 + (ATG)n Simple_repeat Simple_repeat 2 44 0 1 1478 3787 52 14 62 chr6 117171677 117172195 -32344842 + MT2_Mm LTR ERVL 1 493 0 1 1478 387 105 0 0 chr6 117172195 117172252 -32344785 + (ATGGTG)n Simple_repeat Simple_repeat 5 61 0 1 1478 643 247 13 0 chr6 117172466 117172616 -32344421 - B3A SINE B2 -18 180 29 1 1478 27 29 0 0 chr6 117172670 117172704 -32344333 + AT_rich Low_complexity Low_complexity 1 34 0 1 1478 2059 227 89 50 chr6 117172707 117173333 -32343704 + Lx9 LINE L1 6994 7644 0 2 1478 23 0 0 0 chr6 117173432 117173455 -32343582 + AT_rich Low_complexity Low_complexity 1 23 0 2 1478 893 249 5 9 chr6 117173840 117174055 -32342982 + B3 SINE B2 1 214 -2 2 1478 3218 247 98 27 chr6 117175426 117177204 -32339833 - Lx9 LINE L1 -824 6820 4804 2 1478 251 122 20 0 chr6 117177959 117178008 -32339029 + (TCC)n Simple_repeat Simple_repeat 3 52 0 2 1479 956 86 22 22 chr6 117178513 117178691 -32338346 + (TTCTC)n Simple_repeat Simple_repeat 2 179 0 2 1479 482 156 0 20 chr6 117178710 117178808 -32338229 + CT-rich Low_complexity Low_complexity 2 97 0 2 1479 1114 184 18 32 chr6 117179291 117179510 -32337527 - B3 SINE B2 0 216 1 2 1479 493 83 0 23 chr6 117180238 117180324 -32336713 + (TGAA)n Simple_repeat Simple_repeat 1 84 0 2 1479 198 0 0 0 chr6 117181809 117181831 -32335206 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1479 2400 146 44 22 chr6 117182020 117182432 -32334605 - MTC LTR MaLR 0 421 1 2 1479 289 289 111 0 chr6 117182450 117182540 -32334497 - PB1D10 SINE Alu -16 101 2 2 1479 198 0 0 0 chr6 117182557 117182579 -32334458 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1479 257 218 0 0 chr6 117182721 117182776 -32334261 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1479 430 292 155 44 chr6 117182992 117183765 -32333272 + L1MD LINE L1 2562 3420 -2726 2 1479 504 318 39 56 chr6 117184997 117185081 -32331956 + MER2 DNA MER2_type 2 85 -260 2 1479 809 245 48 19 chr6 117185081 117185289 -32331748 + B3 SINE B2 1 214 -2 2 1479 504 318 39 56 chr6 117185289 117185437 -32331600 + MER2 DNA MER2_type 86 230 -115 2 1479 1890 261 65 49 chr6 117185761 117186356 -32330681 - Lx7 LINE L1 -1025 6671 6067 2 1479 1044 259 21 31 chr6 117186371 117186662 -32330375 + Lx7 LINE L1 6867 7154 -542 2 1479 371 330 57 21 chr6 117187315 117187507 -32329530 - MLT1A0 LTR MaLR 0 365 167 2 1479 949 242 45 155 chr6 117187557 117187983 -32329054 - MTE2a LTR MaLR 0 379 1 2 1479 535 314 26 79 chr6 117188033 117188261 -32328776 + MTEa LTR MaLR 1 216 -163 2 1479 283 238 0 91 chr6 117188356 117188444 -32328593 - MLT1A0 LTR MaLR -311 97 18 2 1479 952 287 122 86 chr6 117188755 117189476 -32327561 - L1MB7 LINE L1 -106 6078 5332 2 1479 282 29 0 0 chr6 117189537 117189572 -32327465 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1479 351 0 0 0 chr6 117190092 117190131 -32326906 + (TTA)n Simple_repeat Simple_repeat 1 39 0 2 1479 1043 283 157 34 chr6 117190234 117191067 -32325970 - L1MB7 LINE L1 -975 5171 4236 2 1479 362 255 115 62 chr6 117191271 117191480 -32325557 - L1MB7 LINE L1 -1934 4212 3993 2 1479 407 68 0 17 chr6 117194817 117194877 -32322160 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1479 204 356 56 41 chr6 117194902 117195098 -32321939 - MIR SINE MIR -34 228 30 2 1479 185 265 28 56 chr6 117195167 117195239 -32321798 + MIRc SINE MIR 86 155 -113 2 1479 430 323 100 35 chr6 117195507 117195738 -32321299 + ORR1E LTR MaLR 1 246 -113 2 1479 3352 211 48 32 chr6 117195817 117196613 -32320424 - RMER1C Other Other 0 1342 209 2 1479 1215 26 13 6 chr6 117198001 117198157 -32318880 + L1Md_F3 LINE L1 6428 6584 0 2 1479 210 222 0 0 chr6 117200414 117200450 -32316587 + polypyrimidine Low_complexity Low_complexity 1 36 0 2 1479 391 186 215 8 chr6 117201752 117201882 -32315155 + MER74A LTR ERVL 1 157 -401 2 1479 297 226 111 19 chr6 117201927 117202035 -32315002 + MER74A LTR ERVL 387 504 -54 2 1479 234 91 0 0 chr6 117205151 117205184 -32311853 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1479 212 114 45 0 chr6 117205306 117205350 -32311687 + (TCTCTG)n Simple_repeat Simple_repeat 2 47 0 2 1479 396 55 0 0 chr6 117205353 117205408 -32311629 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1479 1421 202 83 76 chr6 117205429 117205836 -32311201 - MTD LTR MaLR -5 414 5 2 1479 551 308 0 0 chr6 117205846 117205979 -32311058 - RSINE1 SINE B4 -29 136 4 2 1479 208 274 0 0 chr6 117205999 117206050 -32310987 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 2 1479 528 271 59 13 chr6 117207080 117207359 -32309678 - Tigger7 DNA MER2_type -34 305 5 2 1479 503 209 38 15 chr6 117207396 117207527 -32309510 + MLT1B LTR MaLR 28 161 -229 2 1479 576 260 211 28 chr6 117207539 117207856 -32309181 - MTEb LTR MaLR 0 379 5 2 1479 440 265 81 0 chr6 117207930 117208066 -32308971 + MLT1B LTR MaLR 241 387 -3 2 1479 25 0 0 0 chr6 117208169 117208194 -32308843 + AT_rich Low_complexity Low_complexity 1 25 0 2 1479 25062 23 1 0 chr6 117208663 117211558 -32305479 + L1Md_T LINE L1 2691 5586 -297 2 1479 8634 32 0 0 chr6 117211558 117212553 -32304484 + L1Md_T LINE L1 5587 6581 -1 2 1479 300 288 14 0 chr6 117212618 117212691 -32304346 + C-rich Low_complexity Low_complexity 1 74 0 2 1479 1647 103 14 0 chr6 117213573 117213796 -32303241 - L1_Mus4 LINE L1 -311 5572 5347 2 1479 7640 69 24 35 chr6 117213795 117214844 -32302193 + L1_Mus4 LINE L1 5595 6631 -5 2 1479 387 0 0 0 chr6 117214858 117214901 -32302136 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 2 1479 266 304 25 34 chr6 117218125 117218244 -32298793 - MLT1A1 LTR MaLR 0 408 291 2 1479 238 196 64 75 chr6 117218437 117218531 -32298506 - MLT1A1 LTR MaLR -315 93 1 2 1479 660 233 50 6 chr6 117218651 117218832 -32298205 - MER5A DNA MER1_type 0 189 1 2 1479 422 305 60 65 chr6 117218896 117219265 -32297772 - L1MA6 LINE L1 -1 6299 5950 2 1479 239 264 39 141 chr6 117219743 117219829 -32297208 + MER5A DNA MER1_type 6 94 -95 2 1479 288 0 0 0 chr6 117219829 117219861 -32297176 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1479 1212 43 0 0 chr6 117219861 117220002 -32297035 - B1_Mus1 SINE Alu -7 141 1 2 1479 239 264 39 141 chr6 117220002 117220042 -32296995 + MER5A DNA MER1_type 95 119 -70 2 1479 183 325 70 23 chr6 117220137 117220266 -32296771 - MIR3 SINE MIR -61 147 13 2 1479 314 271 193 57 chr6 117223185 117223377 -32293660 - Tigger5 DNA MER2_type -33 2373 2156 2 1479 420 354 7 26 chr6 117224330 117224481 -32292556 + MER2B DNA MER2_type 188 335 -1 2 1479 335 261 107 13 chr6 117225721 117225880 -32291157 - MLT1C LTR MaLR -75 392 219 2 1479 939 118 0 0 chr6 117226224 117226368 -32290669 + (TC)n Simple_repeat Simple_repeat 1 144 0 2 1479 357 251 59 117 chr6 117226798 117227037 -32290000 - ORR1E LTR MaLR -20 339 115 2 1479 216 0 0 0 chr6 117227823 117227847 -32289190 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1479 253 255 138 0 chr6 117228393 117228487 -32288550 + MLT1F LTR MaLR 1 107 -462 2 1479 479 357 98 15 chr6 117228539 117228866 -32288171 - MLT1E LTR MaLR -14 639 286 2 1479 425 349 86 12 chr6 117228951 117229206 -32287831 + MLT1F LTR MaLR 188 461 -87 2 1479 387 0 0 0 chr6 117230495 117230538 -32286499 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1479 21 0 0 0 chr6 117231321 117231342 -32285695 + AT_rich Low_complexity Low_complexity 1 21 0 2 1479 268 240 52 38 chr6 117231342 117231461 -32285576 + MIR SINE MIR 104 223 -45 2 1479 970 82 44 61 chr6 117231923 117232104 -32284933 + URR1A DNA MER1_type 49 226 0 2 1479 704 346 43 14 chr6 117232683 117233029 -32284008 - MLT1A0 LTR MaLR 0 365 10 2 1479 434 227 124 84 chr6 117233181 117233383 -32283654 + L1MD2 LINE L1 6136 6345 -14 2 1479 423 0 0 0 chr6 117234418 117234465 -32282572 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1479 275 239 15 0 chr6 117236386 117236453 -32280584 + CT-rich Low_complexity Low_complexity 2 69 0 2 1479 430 316 40 30 chr6 117238156 117238554 -32278483 + L1MA8 LINE L1 1448 1849 -4028 2 1479 299 295 5 9 chr6 117238837 117238958 -32278079 + L1MEf LINE L1 2357 2480 -3904 2 1479 947 160 6 0 chr6 117238989 117239164 -32277873 + GA-rich Low_complexity Low_complexity 3 178 0 2 1479 290 72 14 54 chr6 117239206 117239280 -32277757 + (CAAA)n Simple_repeat Simple_repeat 1 71 0 2 1479 903 313 107 73 chr6 117239284 117240033 -32277004 + L1MA8 LINE L1 2253 2997 -2883 2 1479 929 194 75 0 chr6 117240033 117240234 -32276803 + B3 SINE B2 1 216 0 2 1479 903 313 107 73 chr6 117240234 117240774 -32276263 + L1MA8 LINE L1 2998 3586 -2294 2 1479 260 121 35 0 chr6 117241140 117241198 -32275839 + (CAGAGA)n Simple_repeat Simple_repeat 4 63 0 2 1479 942 276 48 76 chr6 117241246 117241746 -32275291 + L1MA8 LINE L1 5452 5919 -1554 2 1479 503 281 58 10 chr6 117241794 117241999 -32275038 - MER99 DNA hAT? -615 216 2 2 1479 506 16 16 0 chr6 117242580 117242643 -32274394 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1479 466 288 85 10 chr6 117242874 117243074 -32273963 + L1MB2 LINE L1 5900 6114 -57 2 1479 399 237 0 85 chr6 117243122 117243175 -32273862 + RSINE1 SINE B4 8 58 -107 2 1479 234 0 0 0 chr6 117243175 117243201 -32273836 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 2 1479 1551 34 0 0 chr6 117243201 117243377 -32273660 - B2_Mm1a SINE B2 -17 176 1 2 1479 399 237 0 85 chr6 117243377 117243428 -32273609 + RSINE1 SINE B4 59 103 -62 2 1479 360 0 0 0 chr6 117243440 117243480 -32273557 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1479 403 255 173 18 chr6 117243623 117243791 -32273246 + B4A SINE B4 82 275 -17 2 1479 257 333 11 29 chr6 117244110 117244268 -32272769 + CT-rich Low_complexity Low_complexity 1 155 0 2 1479 321 279 77 0 chr6 117244468 117244572 -32272465 - L1M5 LINE L1 -2920 3226 3115 2 1479 265 289 24 24 chr6 117246172 117246296 -32270741 + CT-rich Low_complexity Low_complexity 1 124 0 2 1479 376 198 135 0 chr6 117248475 117248571 -32268466 - B1F1 SINE Alu -1 148 40 2 1479 240 111 0 0 chr6 117249099 117249135 -32267902 + (TCC)n Simple_repeat Simple_repeat 2 37 0 2 1479 260 320 30 0 chr6 117250642 117250742 -32266295 - Lx8 LINE L1 -303 7170 7068 2 1479 477 330 68 0 chr6 117250762 117250983 -32266054 - Lx8 LINE L1 -457 7016 6781 2 1479 546 16 0 0 chr6 117251065 117251128 -32265909 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2 1479 623 198 95 37 chr6 117251288 117251477 -32265560 - B3 SINE B2 0 216 17 2 1479 24 32 0 0 chr6 117252062 117252093 -32264944 + AT_rich Low_complexity Low_complexity 1 31 0 2 1479 525 276 200 50 chr6 117252325 117252890 -32264147 - L1MEg LINE L1 -4178 1906 1257 2 1479 633 286 34 37 chr6 117252942 117253275 -32263762 - L1MA4A LINE L1 -265 6032 5700 2 1479 373 286 78 14 chr6 117253297 117253439 -32263598 - L1MA4A LINE L1 -674 5626 5476 2 1479 1084 184 83 4 chr6 117253460 117253689 -32263348 - Lx5 LINE L1 0 7050 6804 2 1479 210 71 0 0 chr6 117253749 117253777 -32263260 + (G)n Simple_repeat Simple_repeat 1 28 0 2 1479 28 48 0 0 chr6 117255116 117255158 -32261879 + AT_rich Low_complexity Low_complexity 1 42 0 2 1479 258 339 48 8 chr6 117255692 117255817 -32261220 - B1F1 SINE Alu -6 143 14 2 1479 360 0 0 0 chr6 117255921 117255961 -32261076 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1479 234 365 40 20 chr6 117256123 117256324 -32260713 + MIRb SINE MIR 64 268 0 3 1479 446 224 37 50 chr6 117256332 117256471 -32260566 - L1MA9 LINE L1 -1 6311 6159 3 1479 460 304 19 12 chr6 117256485 117256645 -32260392 + RSINE1 SINE B4 4 164 -1 3 1479 501 277 43 7 chr6 117258419 117258557 -32258480 - B1F SINE Alu -5 144 2 3 1479 315 302 20 20 chr6 117258957 117259055 -32257982 - MLT1A0 LTR MaLR -265 100 3 3 1479 1885 144 16 94 chr6 117260010 117260393 -32256644 + ORR1B1 LTR MaLR 1 353 -41 3 1479 5330 17 0 0 chr6 117260393 117260996 -32256041 + L1Md_T LINE L1 4984 5586 -297 3 1479 9045 7 0 3 chr6 117260996 117261994 -32255043 + L1Md_T LINE L1 5587 6581 -1 3 1479 198 0 0 0 chr6 117262029 117262051 -32254986 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1479 357 127 0 0 chr6 117262051 117262106 -32254931 + ORR1B1 LTR MaLR 340 394 0 3 1479 395 234 60 45 chr6 117262249 117262382 -32254655 + MLT1B LTR MaLR 45 179 -211 3 1479 242 288 151 0 chr6 117262382 117262455 -32254582 + B3A SINE B2 2 85 -113 3 1479 439 297 94 14 chr6 117262537 117262749 -32254288 + MLT1B LTR MaLR 162 390 0 3 1479 1487 261 138 14 chr6 117264953 117265599 -32251438 - L1MC1 LINE L1 -1 6332 5607 3 1479 3117 319 49 52 chr6 117265604 117267015 -32250022 - ORR1E-int LTR MaLR -171 1409 3 3 1479 400 345 59 53 chr6 117267020 117267341 -32249696 - ORR1E LTR MaLR -31 328 6 3 1479 314 301 108 14 chr6 117267397 117267619 -32249418 - L1M5 LINE L1 -1658 4488 4246 3 1479 268 271 29 0 chr6 117267756 117267826 -32249211 + ID4_ SINE ID 1 72 -11 3 1479 254 151 38 0 chr6 117268064 117268117 -32248920 + GA-rich Low_complexity Low_complexity 1 55 0 3 1479 551 313 118 50 chr6 117268130 117268588 -32248449 - L1M5 LINE L1 -2236 3910 3422 3 1479 254 283 11 21 chr6 117270625 117270719 -32246318 + CT-rich Low_complexity Low_complexity 1 93 0 3 1479 441 0 0 0 chr6 117270771 117270820 -32246217 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1479 181 128 0 41 chr6 117271184 117271233 -32245804 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1479 490 76 0 37 chr6 117271814 117271896 -32245141 + (TCC)n Simple_repeat Simple_repeat 1 79 0 3 1479 1753 339 39 42 chr6 117271896 117272541 -32244496 - Lx7 LINE L1 -60 7413 6768 3 1479 3482 25 5 0 chr6 117272541 117272935 -32244102 + MTA_Mm LTR MaLR 1 396 0 3 1479 1753 344 104 35 chr6 117272935 117273429 -32243608 - Lx7 LINE L1 -929 6767 6201 3 1479 195 327 115 6 chr6 117273518 117273675 -32243362 + MIR SINE MIR 20 193 -69 3 1479 452 262 82 55 chr6 117274573 117274603 -32242434 - MER21B LTR ERV1 -136 727 703 3 1479 2939 52 47 3 chr6 117274603 117274986 -32242051 - MTB LTR MaLR 0 400 1 3 1479 452 262 82 55 chr6 117274986 117275137 -32241900 - MER21B LTR ERV1 -161 702 541 3 1479 844 331 71 0 chr6 117275174 117275555 -32241482 - MER21B LTR ERV1 -453 410 3 3 1479 369 0 0 0 chr6 117276889 117276930 -32240107 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1479 622 248 84 25 chr6 117277783 117277986 -32239051 + RCHARR1 DNA MER1_type 758 972 -2 3 1479 672 254 97 10 chr6 117278017 117278224 -32238813 - MLT1B LTR MaLR -79 311 87 3 1479 545 252 22 0 chr6 117278229 117278368 -32238669 + B1F1 SINE Alu 2 143 -6 3 1479 23 0 0 0 chr6 117278376 117278399 -32238638 + AT_rich Low_complexity Low_complexity 1 23 0 3 1479 429 36 0 0 chr6 117278561 117278616 -32238421 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1479 361 249 134 28 chr6 117278627 117278827 -32238210 - B4A SINE B4 -20 272 1 3 1479 488 16 16 0 chr6 117279855 117279916 -32237121 + (TTTTC)n Simple_repeat Simple_repeat 3 64 0 3 1479 1109 45 0 15 chr6 117279919 117280055 -32236982 - B1_Mm SINE Alu -13 134 1 3 1479 1383 79 10 16 chr6 117281480 117281672 -32235365 + B2_Mm1t SINE B2 1 191 -2 3 1479 354 199 22 30 chr6 117284304 117284439 -32232598 + CT-rich Low_complexity Low_complexity 1 134 0 3 1479 585 332 86 23 chr6 117284498 117284754 -32232283 - B4A SINE B4 0 292 21 3 1479 3020 17 45 3 chr6 117284788 117285140 -32231897 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1479 29650 17 1 0 chr6 117285140 117288409 -32228628 - IAPEz-int LTR ERVK 0 6481 3209 3 1479 7956 55 125 77 chr6 117288407 117289653 -32227384 - IAPEz-int LTR ERVK -5168 1313 8 3 1479 3020 17 45 3 chr6 117289653 117290005 -32227032 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1479 654 224 449 4 chr6 117290017 117290278 -32226759 - MTC LTR MaLR -42 379 3 3 1479 4465 67 0 4 chr6 117290675 117291231 -32225806 - L1_Mus1 LINE L1 -4 6563 6010 3 1479 34 65 0 0 chr6 117291356 117291418 -32225619 + AT_rich Low_complexity Low_complexity 1 62 0 3 1479 468 293 123 4 chr6 117291753 117292013 -32225024 + MER2 DNA MER2_type 2 292 -53 3 1479 2026 308 94 11 chr6 117294132 117294876 -32222161 + Lx8 LINE L1 6536 7341 -132 3 1479 4226 145 11 23 chr6 117294879 117295585 -32221452 - L1_Mur2 LINE L1 -193 5684 4987 3 1479 3575 182 43 17 chr6 117295587 117296449 -32220588 + Lx4B LINE L1 6097 6998 -2 3 1479 233 349 111 0 chr6 117296589 117296778 -32220259 - L1MDb LINE L1 -3377 3629 3420 3 1479 318 333 33 0 chr6 117296866 117296956 -32220081 - B1F2 SINE Alu -51 98 6 3 1479 1364 278 98 26 chr6 117297282 117297774 -32219263 + L1M4 LINE L1 341 867 -5675 3 1479 992 255 126 51 chr6 117297908 117298206 -32218831 + MTD LTR MaLR 5 334 -85 3 1479 1172 144 119 0 chr6 117298206 117298408 -32218629 + URR1A DNA MER1_type 1 226 0 3 1479 992 250 39 55 chr6 117298408 117298494 -32218543 + MTD LTR MaLR 288 404 -15 3 1479 1071 281 92 60 chr6 117298737 117298835 -32218202 + L1M4 LINE L1 2714 2797 -3847 3 1479 4633 32 2 0 chr6 117298835 117299368 -32217669 - L1Md_F2 LINE L1 -12 6570 6037 3 1479 1071 281 92 60 chr6 117299368 117300018 -32217019 + L1M4 LINE L1 2798 3486 -3158 3 1479 392 335 63 29 chr6 117300176 117300697 -32216340 + L1_Mur3 LINE L1 1211 1735 -4145 3 1479 3024 297 101 22 chr6 117300689 117302395 -32214642 + L1_Mur3 LINE L1 2273 4113 -1767 3 1479 254 328 8 25 chr6 117302407 117302529 -32214508 - L1_Rod LINE L1 -806 5041 4922 3 1479 275 233 40 14 chr6 117302756 117302901 -32214136 - L1MDb LINE L1 -4567 2535 2313 3 1479 339 338 37 12 chr6 117303244 117303406 -32213631 - L1MDb LINE L1 -6237 772 607 3 1479 229 135 38 53 chr6 117303559 117303692 -32213345 + (TATAA)n Simple_repeat Simple_repeat 5 135 0 3 1479 893 211 41 64 chr6 117304213 117304431 -32212606 - B3 SINE B2 -3 213 1 3 1479 2311 187 21 34 chr6 117304493 117305024 -32212013 + MT2A LTR ERVL 1 524 -9 3 1479 294 284 395 0 chr6 117306311 117306538 -32210499 + Tigger5 DNA MER2_type 1 316 -2090 3 1479 645 269 20 15 chr6 117306527 117306727 -32210310 + Tigger5 DNA MER2_type 2107 2307 -99 3 1479 24 67 0 0 chr6 117307455 117307500 -32209537 + AT_rich Low_complexity Low_complexity 1 45 0 3 1479 1088 73 7 0 chr6 117307538 117307689 -32209348 + (GGGAGA)n Simple_repeat Simple_repeat 3 154 0 3 1479 1378 6 6 12 chr6 117307770 117307938 -32209099 + (GGGAGA)n Simple_repeat Simple_repeat 2 168 0 3 1479 1175 264 46 52 chr6 117308388 117308735 -32208302 - ORR1E LTR MaLR -8 351 7 3 1479 312 27 0 0 chr6 117308978 117309015 -32208022 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1479 245 344 84 24 chr6 117309039 117309206 -32207831 + MIR SINE MIR 63 239 -23 3 1480 21 0 0 0 chr6 117310151 117310172 -32206865 + AT_rich Low_complexity Low_complexity 1 21 0 3 1480 428 296 0 0 chr6 117310557 117310672 -32206365 - L1MD LINE L1 -2509 3637 3523 3 1480 847 194 28 99 chr6 117310849 117311101 -32205936 - RLTR20B3 LTR ERVK -323 254 21 3 1480 3481 265 47 52 chr6 117311105 117312246 -32204791 - Lx9 LINE L1 -371 7273 6138 3 1480 408 304 17 158 chr6 117312463 117312696 -32204341 + L1M2 LINE L1 2676 2899 -3244 3 1480 1201 112 21 11 chr6 117312696 117312886 -32204151 + B2_Mm2 SINE B2 2 193 -2 3 1480 408 304 17 158 chr6 117312886 117313063 -32203974 + L1M2 LINE L1 2900 3028 -3115 3 1480 502 148 22 33 chr6 117313066 117313157 -32203880 + B1_Mus2 SINE Alu 57 146 -1 3 1480 896 310 124 8 chr6 117313166 117313487 -32203550 + L1M2 LINE L1 3036 3374 -2769 3 1480 510 17 0 0 chr6 117313487 117313546 -32203491 + (TAAAA)n Simple_repeat Simple_repeat 1 59 0 3 1480 896 310 124 8 chr6 117313546 117313838 -32203199 + L1M2 LINE L1 3375 3720 -2423 3 1480 277 184 90 20 chr6 117314207 117314307 -32202730 - L1M5 LINE L1 -305 5819 5713 3 1480 1139 182 56 9 chr6 117314617 117314833 -32202204 + URR1A DNA MER1_type 1 226 0 3 1480 279 297 76 11 chr6 117315096 117315188 -32201849 - B1F SINE Alu -8 141 44 3 1480 600 188 22 17 chr6 117316144 117316323 -32200714 + GA-rich Low_complexity Low_complexity 1 180 0 3 1480 650 263 46 5 chr6 117317095 117317290 -32199747 - ID_B1 SINE B4 -21 203 1 3 1480 271 265 37 84 chr6 117318319 117318602 -32198435 + MTE2b LTR MaLR 97 377 -2 3 1480 744 322 74 14 chr6 117318963 117319313 -32197724 + L4 LINE RTE 698 1068 -961 3 1480 235 231 80 44 chr6 117319643 117319756 -32197281 - Lx7 LINE L1 -17 7679 7563 3 1480 639 103 153 38 chr6 117319758 117319889 -32197148 + B1_Mur3 SINE Alu 4 149 0 3 1480 447 305 19 0 chr6 117320136 117320290 -32196747 - L1MB3 LINE L1 -227 5956 5800 3 1480 1170 111 28 11 chr6 117320293 117320475 -32196562 + B2_Mm2 SINE B2 2 186 -9 3 1480 905 280 48 34 chr6 117320795 117321195 -32195842 - BGLII_B LTR ERVK -27 414 22 3 1480 348 127 0 0 chr6 117321197 117321252 -32195785 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1480 942 311 75 17 chr6 117321292 117321694 -32195343 + MTE-int LTR MaLR 660 1084 -496 3 1480 582 261 81 138 chr6 117321801 117322317 -32194720 - RMER20B LTR ERVK -61 566 30 3 1480 1021 263 85 39 chr6 117322367 117322750 -32194287 + ORR1E-int LTR MaLR 965 1527 -53 3 1480 808 306 0 36 chr6 117322750 117322998 -32194039 + ORR1E LTR MaLR 1 239 -120 3 1480 739 285 91 51 chr6 117323990 117324286 -32192751 - MER2 DNA MER2_type 0 345 38 3 1480 2021 126 3 66 chr6 117325023 117325372 -32191665 - ORR1A2 LTR MaLR 0 327 1 3 1480 266 299 97 57 chr6 117325916 117326040 -32190997 - ORR1E LTR MaLR -5 374 246 3 1480 422 325 8 0 chr6 117326113 117326233 -32190804 - ORR1E LTR MaLR -220 139 19 3 1480 459 272 149 36 chr6 117326461 117326682 -32190355 + MER68 LTR ERVL 1 246 -317 3 1480 369 0 0 0 chr6 117326727 117326768 -32190269 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 3 1480 180 176 0 0 chr6 117326802 117326836 -32190201 + (CATA)n Simple_repeat Simple_repeat 2 35 0 3 1480 186 133 0 0 chr6 117326845 117326875 -32190162 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1480 2193 245 83 86 chr6 117327404 117328507 -32188530 - L1MC LINE L1 -2732 3414 2315 3 1480 180 0 0 0 chr6 117328525 117328545 -32188492 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1480 571 226 62 55 chr6 117328563 117328708 -32188329 - B3A SINE B2 -38 160 15 3 1480 239 327 0 93 chr6 117329550 117329668 -32187369 + L2c LINE L2 3268 3374 -13 3 1480 325 325 35 27 chr6 117330276 117330535 -32186502 - L1MC4a LINE L1 -187 7774 7514 3 1480 806 282 51 67 chr6 117330540 117330912 -32186125 + MTE2b LTR MaLR 1 366 -13 3 1480 611 263 48 43 chr6 117331242 117331449 -32185588 + MTD LTR MaLR 24 231 -188 3 1480 260 318 37 0 chr6 117331466 117331573 -32185464 + MTD LTR MaLR 295 405 -14 3 1480 489 245 75 96 chr6 117331725 117332005 -32185032 - Lx9 LINE L1 -35 7609 7336 4 1480 258 32 0 0 chr6 117332214 117332245 -32184792 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 1480 435 285 27 14 chr6 117332259 117332405 -32184632 - L1MC4a LINE L1 -1061 6821 6674 3 1480 1823 169 56 86 chr6 117332873 117333301 -32183736 + MTD LTR MaLR 5 419 0 4 1480 292 246 0 0 chr6 117333554 117333619 -32183418 - Lx9 LINE L1 -795 6849 6785 4 1480 934 257 146 9 chr6 117333616 117333920 -32183117 - Lx9 LINE L1 -961 6683 6196 4 1480 918 110 0 0 chr6 117333920 117334066 -32182971 + (TC)n Simple_repeat Simple_repeat 2 147 0 4 1480 1717 241 50 20 chr6 117334066 117334759 -32182278 - Lx9 LINE L1 -1278 6195 5439 4 1480 6980 231 62 50 chr6 117334773 117336345 -32180692 - Lx9 LINE L1 -2301 3546 1958 4 1480 225 0 0 0 chr6 117336345 117336370 -32180667 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1480 6980 242 61 41 chr6 117336370 117337289 -32179748 - Lx9 LINE L1 -3890 1957 1014 4 1480 566 248 76 0 chr6 117337701 117337846 -32179191 + B3A SINE B2 5 160 -38 4 1480 297 0 0 0 chr6 117337854 117337887 -32179150 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1480 284 0 0 27 chr6 117337887 117337923 -32179114 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1480 8273 46 1 1 chr6 117337963 117338947 -32178090 - L1Md_F2 LINE L1 -12 6570 5587 4 1480 3439 45 21 0 chr6 117339051 117339477 -32177560 - L1Md_F3 LINE L1 0 6584 6150 4 1480 407 212 20 7 chr6 117341874 117342026 -32175011 + GA-rich Low_complexity Low_complexity 2 155 0 4 1480 353 75 0 19 chr6 117342736 117342790 -32174247 + (TCTCCC)n Simple_repeat Simple_repeat 3 55 0 4 1480 189 257 57 0 chr6 117343649 117343719 -32173318 - L2 LINE L2 -338 3081 3008 4 1480 889 162 18 0 chr6 117343775 117343942 -32173095 + ORR1B1 LTR MaLR 223 392 -2 4 1480 261 276 0 26 chr6 117343946 117344024 -32173013 + PB1D10 SINE Alu 5 80 -37 4 1480 23 33 0 0 chr6 117344024 117344054 -32172983 + AT_rich Low_complexity Low_complexity 1 30 0 4 1480 38903 43 0 3 chr6 117344073 117350493 -32166544 - L1Md_T LINE L1 0 6585 88 4 1480 664 205 12 0 chr6 117350611 117350772 -32166265 + GA-rich Low_complexity Low_complexity 1 163 0 4 1480 280 300 149 50 chr6 117350885 117351443 -32165594 + L1MDa LINE L1 863 1475 -5158 4 1480 972 224 62 8 chr6 117351621 117351864 -32165173 + MTD LTR MaLR 163 418 -1 4 1480 1068 264 157 18 chr6 117351865 117352315 -32164722 - Lx8 LINE L1 -220 7253 6741 4 1480 668 266 106 37 chr6 117352317 117352778 -32164259 + L1MDa LINE L1 4768 5263 -1274 4 1480 471 230 61 61 chr6 117353184 117353332 -32163705 + MT2B LTR ERVL 110 257 -344 4 1480 1018 73 0 0 chr6 117353240 117353376 -32163661 + B1_Mus1 SINE Alu 12 147 -1 4 1480 250 41 39 58 chr6 117353376 117353428 -32163609 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 4 1480 592 231 65 25 chr6 117355502 117355702 -32161335 + L1MD LINE L1 3729 3936 -2210 4 1480 650 278 9 38 chr6 117356338 117356551 -32160486 + B4 SINE B4 86 292 0 4 1480 297 0 0 0 chr6 117356597 117356630 -32160407 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1480 338 345 77 68 chr6 117358095 117358421 -32158616 + MLT1H LTR MaLR 86 414 -135 4 1480 534 196 153 13 chr6 117359954 117360104 -32156933 + MTD LTR MaLR 228 398 -21 4 1480 1826 269 125 105 chr6 117360121 117361190 -32155847 + MTD-int LTR MaLR 1 1091 -167 4 1480 309 346 66 37 chr6 117361194 117361467 -32155570 - MER65-int LTR ERV1 -62 4809 4529 4 1480 230 278 83 76 chr6 117362486 117362630 -32154407 + B4A SINE B4 54 198 -94 4 1480 3838 116 61 7 chr6 117362632 117363240 -32153797 - L1_Mur2 LINE L1 -926 4951 4311 4 1480 1540 192 92 0 chr6 117363240 117363568 -32153469 + Lx5 LINE L1 6693 7050 0 4 1480 270 282 0 0 chr6 117363603 117363674 -32153363 + B4A SINE B4 215 285 -7 4 1480 237 323 0 31 chr6 117363681 117363809 -32153228 + (CA)n Simple_repeat Simple_repeat 1 124 0 4 1480 816 161 0 40 chr6 117366183 117366332 -32150705 + B1_Mus1 SINE Alu 5 147 -1 4 1480 696 43 0 0 chr6 117366332 117366424 -32150613 + (TG)n Simple_repeat Simple_repeat 2 93 0 4 1480 261 0 0 0 chr6 117366449 117366478 -32150559 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1480 488 308 31 19 chr6 117367475 117367637 -32149400 + RSINE1 SINE B4 2 165 0 4 1480 351 78 0 0 chr6 117367671 117367722 -32149315 + (ATTG)n Simple_repeat Simple_repeat 2 52 0 4 1480 1290 237 77 14 chr6 117367963 117368314 -32148723 - MTD LTR MaLR 0 419 47 4 1480 233 57 29 0 chr6 117368325 117368360 -32148677 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 1480 247 244 26 0 chr6 117368392 117368470 -32148567 + Tigger7 DNA MER2_type 2332 2411 -80 4 1480 413 120 196 0 chr6 117368542 117368634 -32148403 + Lx LINE L1 6545 6654 0 4 1480 8616 20 0 7 chr6 117368895 117370461 -32146576 - L1Md_T LINE L1 0 6582 5023 4 1480 1225 226 210 102 chr6 117370476 117371142 -32145895 - Lx9 LINE L1 -27 7617 6880 4 1480 935 238 95 16 chr6 117371231 117371523 -32145514 + MTE2b LTR MaLR 62 379 0 4 1480 509 307 42 42 chr6 117371527 117371765 -32145272 + MT2A LTR ERVL 1 238 -295 4 1480 324 158 0 0 chr6 117371768 117371825 -32145212 + (CTG)n Simple_repeat Simple_repeat 1 57 0 4 1480 267 272 12 12 chr6 117371825 117371907 -32145130 + MT2A LTR ERVL 230 311 -222 4 1480 261 163 0 0 chr6 117372834 117372883 -32144154 + GA-rich Low_complexity Low_complexity 2 50 0 4 1480 1629 160 90 33 chr6 117373957 117374325 -32142712 + ORR1B1 LTR MaLR 6 394 0 4 1480 228 239 0 0 chr6 117374515 117374561 -32142476 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1480 290 320 43 65 chr6 117374721 117374905 -32142132 - MLT1B LTR MaLR -17 373 194 4 1480 181 235 111 56 chr6 117375570 117375642 -32141395 - L2b LINE L2 -194 3181 3106 4 1480 1035 115 207 27 chr6 117375720 117375908 -32141129 + URR1A DNA MER1_type 3 224 -2 4 1480 695 275 169 31 chr6 117375912 117376146 -32140891 + MTD LTR MaLR 35 304 -115 4 1480 651 60 0 0 chr6 117376146 117376230 -32140807 + (TTTTC)n Simple_repeat Simple_repeat 2 85 0 4 1480 695 219 34 42 chr6 117376230 117376335 -32140702 + MTD LTR MaLR 293 404 -15 4 1480 564 235 0 0 chr6 117376416 117376578 -32140459 + (CA)n Simple_repeat Simple_repeat 1 162 0 4 1480 697 239 0 0 chr6 117376990 117377132 -32139905 - RSINE1 SINE B4 -22 143 2 4 1480 262 284 6 24 chr6 117378985 117379083 -32137954 - BC1_Mm scRNA scRNA -49 103 5 4 1480 180 0 0 0 chr6 117380605 117380625 -32136412 + (TGG)n Simple_repeat Simple_repeat 1 20 0 4 1480 230 254 0 83 chr6 117380661 117380721 -32136316 - PB1D9 SINE Alu 0 120 66 4 1480 384 274 118 0 chr6 117380759 117380894 -32136143 - MER20 DNA MER1_type -40 179 29 4 1480 216 0 0 0 chr6 117380905 117380929 -32136108 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 4 1480 495 0 0 0 chr6 117382891 117382946 -32134091 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1480 1274 183 25 238 chr6 117383054 117383542 -32133495 + ORR1C2 LTR MaLR 1 384 0 4 1480 914 270 81 7 chr6 117383653 117383948 -32133089 - MLT2B4 LTR ERVL -224 332 16 4 1480 417 20 0 0 chr6 117385708 117385758 -32131279 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1480 1374 207 166 37 chr6 117389521 117389634 -32127403 - L1_Mur3 LINE L1 -1082 4798 4657 4 1480 321 68 0 0 chr6 117389634 117389678 -32127359 + (TTG)n Simple_repeat Simple_repeat 3 46 0 4 1480 1374 207 166 37 chr6 117389678 117389936 -32127101 - L1_Mur3 LINE L1 -1224 4656 4374 4 1480 270 0 0 0 chr6 117389936 117389966 -32127071 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 4 1480 1374 207 166 37 chr6 117389966 117390050 -32126987 - L1_Mur3 LINE L1 -1507 4373 4283 4 1480 240 266 118 40 chr6 117390405 117390608 -32126429 - L1MEf LINE L1 -5139 1494 1283 4 1480 921 219 29 19 chr6 117392742 117392758 -32124279 - B3 SINE B2 -1 215 201 4 1480 333 0 0 0 chr6 117392758 117392795 -32124242 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 4 1480 921 219 29 19 chr6 117392795 117392987 -32124050 - B3 SINE B2 -16 200 5 4 1480 408 20 0 0 chr6 117393334 117393383 -32123654 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1480 231 380 77 7 chr6 117396853 117396996 -32120041 - MER2 DNA MER2_type -192 153 1 4 1480 302 299 13 0 chr6 117397108 117397185 -32119852 + PB1D10 SINE Alu 2 79 -38 4 1480 203 317 0 35 chr6 117397195 117397280 -32119757 + GA-rich Low_complexity Low_complexity 3 84 0 4 1480 331 329 83 42 chr6 117397767 117398012 -32119025 - MIRb SINE MIR -13 249 6 4 1480 311 286 95 0 chr6 117398215 117398320 -32118717 - MTEb LTR MaLR 0 379 265 4 1480 1809 264 93 29 chr6 117398467 117399045 -32117992 - MTE-int LTR MaLR -79 1501 887 4 1480 337 283 43 11 chr6 117399255 117399348 -32117689 + ORR1E LTR MaLR 1 96 -263 4 1480 780 262 76 0 chr6 117399548 117399785 -32117252 + MTE-int LTR MaLR 6 260 -1320 4 1480 269 281 0 12 chr6 117399839 117399922 -32117115 + Lx8 LINE L1 6982 7063 -410 4 1480 511 342 50 18 chr6 117399917 117400197 -32116840 + Lx9 LINE L1 7225 7513 -131 4 1480 495 73 0 0 chr6 117400201 117400269 -32116768 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1480 24 67 0 0 chr6 117400389 117400434 -32116603 + AT_rich Low_complexity Low_complexity 1 45 0 4 1480 290 314 204 10 chr6 117400688 117400884 -32116153 - MTE-int LTR MaLR -927 653 420 4 1480 658 266 193 42 chr6 117400911 117401248 -32115789 + MTD LTR MaLR 18 405 -14 4 1480 446 250 114 0 chr6 117401266 117401406 -32115631 - MTE-int LTR MaLR -1159 421 266 4 1480 3167 315 100 15 chr6 117403345 117404690 -32112347 - Lx8 LINE L1 -29 7444 5985 4 1480 762 236 160 1 chr6 117405125 117405386 -32111651 - MTEa LTR MaLR -59 320 16 4 1480 208 287 48 38 chr6 117405387 117405492 -32111545 - MIRb SINE MIR -68 200 95 4 1480 189 241 0 0 chr6 117406144 117406198 -32110839 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 4 1480 374 302 46 8 chr6 117406397 117406527 -32110510 - MLT1B LTR MaLR -24 366 232 4 1480 304 257 199 7 chr6 117406784 117406925 -32110112 - MLT1B LTR MaLR -154 236 69 4 1480 306 125 0 0 chr6 117407837 117407885 -32109152 + (GGGAGA)n Simple_repeat Simple_repeat 3 50 0 4 1480 202 174 20 61 chr6 117408589 117408600 -32108437 + polypurine Low_complexity Low_complexity 4 14 0 4 1480 1387 14 0 28 chr6 117408600 117408883 -32108154 + (GGAA)n Simple_repeat Simple_repeat 1 275 0 4 1480 202 174 20 61 chr6 117408883 117408919 -32108118 + polypurine Low_complexity Low_complexity 15 49 0 4 1480 484 315 80 44 chr6 117409221 117409447 -32107590 + ORR1E LTR MaLR 5 238 -121 4 1480 183 167 0 0 chr6 117409665 117409707 -32107330 + C-rich Low_complexity Low_complexity 1 42 0 4 1480 423 288 9 0 chr6 117411157 117411268 -32105769 - B4A SINE B4 -179 113 2 4 1480 471 239 107 15 chr6 117411300 117411487 -32105550 - L1M5 LINE L1 -672 5507 5304 4 1480 263 209 14 69 chr6 117417292 117417364 -32099673 + ID4_ SINE ID 5 72 -11 5 1480 408 319 9 0 chr6 117417365 117417481 -32099556 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 1480 3532 72 68 66 chr6 117418249 117418781 -32098256 + RMER16 LTR ERVK 1 533 0 5 1480 1622 47 0 10 chr6 117419410 117419604 -32097433 + B2_Mm1a SINE B2 2 193 0 5 1480 21 82 0 0 chr6 117419827 117419876 -32097161 + AT_rich Low_complexity Low_complexity 1 49 0 5 1480 2053 117 3 109 chr6 117421703 117422069 -32094968 + ORR1A2 LTR MaLR 1 327 0 5 1480 198 0 0 0 chr6 117422695 117422717 -32094320 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1480 295 206 29 0 chr6 117423650 117423718 -32093319 + B3A SINE B2 9 78 -120 5 1480 441 0 0 0 chr6 117423723 117423772 -32093265 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1480 26 0 0 0 chr6 117424502 117424528 -32092509 + AT_rich Low_complexity Low_complexity 1 26 0 5 1480 3694 129 31 7 chr6 117424605 117425193 -32091844 + Lx4B LINE L1 6325 6916 -142 5 1480 203 250 0 14 chr6 117425392 117425461 -32091576 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1480 600 284 0 55 chr6 117425483 117425647 -32091390 - B3A SINE B2 -30 168 14 5 1480 349 336 28 0 chr6 117425667 117425774 -32091263 - PB1D9 SINE Alu -9 111 2 5 1480 349 189 21 0 chr6 117427061 117427156 -32089881 + GA-rich Low_complexity Low_complexity 2 98 0 5 1480 180 176 0 0 chr6 117427257 117427291 -32089746 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 1480 767 176 22 131 chr6 117427320 117427497 -32089540 - B3A SINE B2 0 198 39 5 1480 1253 26 7 0 chr6 117427497 117427650 -32089387 + (TCTCCC)n Simple_repeat Simple_repeat 3 156 0 5 1480 1043 96 29 0 chr6 117427654 117427790 -32089247 - B1_Mus2 SINE Alu -7 140 1 5 1480 767 176 22 131 chr6 117427790 117427829 -32089208 - B3A SINE B2 -160 38 3 5 1480 344 40 20 0 chr6 117428983 117429033 -32088004 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1480 24 0 0 0 chr6 117431620 117431644 -32085393 + AT_rich Low_complexity Low_complexity 1 24 0 5 1480 263 260 85 84 chr6 117432292 117432549 -32084488 + MLT1A1 LTR MaLR 139 346 -19 5 1480 613 272 13 6 chr6 117432855 117433014 -32084023 + RSINE1 SINE B4 6 165 0 5 1480 266 220 17 0 chr6 117433014 117433073 -32083964 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1480 376 287 114 94 chr6 117434193 117434308 -32082729 + RMER10A LTR ERVL 14 150 -292 5 1480 3320 46 5 0 chr6 117434308 117434702 -32082335 - MTA_Mm LTR MaLR 0 396 1 5 1480 376 287 114 94 chr6 117434702 117434990 -32082047 + RMER10A LTR ERVL 151 424 -18 5 1480 1033 213 38 36 chr6 117435249 117435565 -32081472 - Lx LINE L1 -929 5725 5389 5 1480 324 235 60 101 chr6 117436019 117436217 -32080820 - L1MA4A LINE L1 -265 6026 5835 5 1480 24 32 0 0 chr6 117436366 117436397 -32080640 + AT_rich Low_complexity Low_complexity 1 31 0 5 1480 3086 288 70 17 chr6 117436490 117437636 -32079401 - Lx9 LINE L1 -7 7637 6431 5 1480 180 176 0 0 chr6 117437636 117437670 -32079367 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1480 279 55 36 18 chr6 117437878 117437933 -32079104 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 5 1480 733 237 11 23 chr6 117437942 117438119 -32078918 - L1_Rod LINE L1 0 5847 5673 5 1480 874 297 116 21 chr6 117438603 117439084 -32077953 - L1MB4 LINE L1 -175 6005 5479 5 1480 432 0 0 0 chr6 117439602 117439650 -32077387 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1481 499 287 87 52 chr6 117440851 117441138 -32075899 + MLT1D LTR MaLR 201 497 -8 5 1481 375 253 0 0 chr6 117443577 117443652 -32073385 + ID4 SINE ID 4 78 -5 5 1481 777 252 191 18 chr6 117443700 117444037 -32073000 + L1MB3 LINE L1 5601 5996 -187 5 1481 24 0 0 0 chr6 117444536 117444560 -32072477 + AT_rich Low_complexity Low_complexity 1 24 0 5 1481 268 243 68 51 chr6 117444640 117444757 -32072280 - MLT1C LTR MaLR -346 121 3 5 1481 29 60 0 0 chr6 117444962 117445012 -32072025 + AT_rich Low_complexity Low_complexity 1 50 0 5 1481 559 275 93 23 chr6 117445540 117445797 -32071240 + L1MA6 LINE L1 6019 6293 -7 5 1481 407 280 28 0 chr6 117445818 117445925 -32071112 + PB1D7 SINE Alu 2 111 -9 5 1481 355 290 130 34 chr6 117446036 117446243 -32070794 - MLT1E3 LTR MaLR -27 597 371 5 1481 420 20 0 0 chr6 117446300 117446349 -32070688 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1481 498 33 0 0 chr6 117446349 117446408 -32070629 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1481 3515 164 78 132 chr6 117446975 117447929 -32069108 + RMER19B LTR ERVK 1 902 0 5 1481 309 252 191 0 chr6 117450834 117450949 -32066088 + L1M4b LINE L1 2949 3085 -4017 5 1481 497 272 26 4 chr6 117450949 117451096 -32065941 - B1F1 SINE Alu -1 148 1 5 1481 464 256 38 0 chr6 117451103 117451236 -32065801 + L1M4b LINE L1 3525 3662 -3672 5 1481 734 308 61 44 chr6 117451796 117452522 -32064515 + L1MA6 LINE L1 2130 2903 -3240 5 1481 479 248 102 5 chr6 117452694 117452964 -32064073 + L1MA6 LINE L1 2900 3195 -2945 5 1481 503 312 27 0 chr6 117453102 117453288 -32063749 + L1MA6 LINE L1 4731 4921 -1222 5 1481 704 211 0 81 chr6 117453301 117453461 -32063576 + B1_Mur4 SINE Alu 3 149 -1 5 1481 306 279 115 0 chr6 117453475 117453640 -32063397 + L1MA6 LINE L1 4918 5101 -1042 5 1481 1020 305 82 36 chr6 117453734 117454384 -32062653 + L1MA6 LINE L1 5229 5937 -363 5 1481 390 21 0 0 chr6 117454600 117454647 -32062390 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1481 1109 264 46 82 chr6 117456109 117456497 -32060540 + MTEb LTR MaLR 6 379 0 5 1481 297 51 0 0 chr6 117457525 117457564 -32059473 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 5 1481 21 0 0 0 chr6 117459906 117459927 -32057110 + AT_rich Low_complexity Low_complexity 1 21 0 5 1481 198 0 0 0 chr6 117461038 117461060 -32055977 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1481 531 0 0 0 chr6 117461060 117461118 -32055919 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1481 796 210 0 0 chr6 117461123 117461261 -32055776 - B1_Mus2 SINE Alu -8 139 2 5 1481 1127 199 86 104 chr6 117462703 117463089 -32053948 + Lx9 LINE L1 7264 7642 -2 5 1481 241 309 29 76 chr6 117465305 117465410 -32051627 - MLT1A LTR MaLR -249 125 26 5 1481 283 292 9 36 chr6 117465767 117465877 -32051160 + MER5A DNA MER1_type 1 107 -82 5 1481 531 192 106 56 chr6 117466848 117467008 -32050029 + L1M4b LINE L1 17 184 -7150 5 1481 526 248 89 53 chr6 117467560 117467807 -32049230 + L1M4b LINE L1 3463 3718 -3288 5 1481 446 254 128 31 chr6 117468174 117468401 -32048636 + L1M4b LINE L1 3714 3962 -3044 5 1481 367 294 160 42 chr6 117468503 117468692 -32048345 + L1M4b LINE L1 4066 4278 -2722 5 1481 432 0 0 0 chr6 117468692 117468740 -32048297 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1481 262 294 160 42 chr6 117468740 117468856 -32048181 + L1M4b LINE L1 4279 4407 -2593 5 1481 1685 206 25 0 chr6 117468856 117469177 -32047860 - Lx9 LINE L1 -503 7141 6813 5 1481 456 19 0 0 chr6 117469292 117469345 -32047692 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1481 2366 190 12 95 chr6 117469346 117469974 -32047063 - Lx9 LINE L1 -1683 5961 5350 5 1481 1989 220 38 16 chr6 117469991 117470443 -32046594 - Lx9 LINE L1 -1663 4184 3723 5 1481 12196 15 0 0 chr6 117470443 117472537 -32044500 - L1Md_T LINE L1 0 6582 4489 5 1481 4171 216 57 28 chr6 117472532 117473689 -32043348 - Lx9 LINE L1 -2128 3719 2529 5 1481 1789 192 44 108 chr6 117473695 117474056 -32042981 - Lx9 LINE L1 -4087 1760 1424 5 1481 456 19 0 0 chr6 117474056 117474109 -32042928 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1481 1897 194 28 75 chr6 117474109 117474639 -32042398 - Lx9 LINE L1 -4424 1423 905 5 1481 271 171 43 0 chr6 117474992 117475062 -32041975 + GA-rich Low_complexity Low_complexity 2 74 0 5 1481 569 156 94 69 chr6 117475568 117475727 -32041310 - Lx9 LINE L1 -79 7565 7403 5 1481 24158 6 0 0 chr6 117478071 117481450 -32035587 - L1Md_A LINE L1 0 6582 3204 5 1481 226 167 0 0 chr6 117481777 117481819 -32035218 - MT2B2 LTR ERVL 0 584 543 5 1481 627 179 0 8 chr6 117481815 117481933 -32035104 + MTD LTR MaLR 303 419 0 5 1481 252 130 0 0 chr6 117483690 117483736 -32033301 + (GGGGA)n Simple_repeat Simple_repeat 5 50 0 5 1481 210 176 0 0 chr6 117483988 117484039 -32032998 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1481 281 211 12 50 chr6 117485345 117485404 -32031633 + LTR41B LTR ERVL 572 627 -131 5 1481 834 133 7 0 chr6 117485404 117485539 -32031498 - MTC LTR MaLR 0 421 286 5 1481 704 316 102 14 chr6 117486035 117486629 -32030408 - L1MA4 LINE L1 -418 5882 5232 5 1481 507 268 36 42 chr6 117486653 117486850 -32030187 - L1MA4 LINE L1 -3625 2518 2291 5 1481 361 285 99 46 chr6 117487229 117487380 -32029657 - RMER15 LTR ERVL -65 510 352 5 1481 444 263 89 13 chr6 117487466 117487624 -32029413 + RMER15 LTR ERVL 406 575 0 5 1481 278 102 34 0 chr6 117488888 117488947 -32028090 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 5 1481 510 151 0 0 chr6 117489048 117489154 -32027883 + CT-rich Low_complexity Low_complexity 1 106 0 5 1481 2318 277 83 54 chr6 117489189 117489267 -32027770 + Lx8 LINE L1 6091 6168 -1305 5 1481 186 43 0 0 chr6 117489267 117489290 -32027747 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1481 2318 277 83 54 chr6 117489290 117490046 -32026991 + Lx8 LINE L1 6169 6949 -524 5 1481 622 328 18 50 chr6 117490228 117490548 -32026489 + Lx8 LINE L1 6976 7280 -416 5 1481 259 284 14 0 chr6 117493333 117493407 -32023630 + CT-rich Low_complexity Low_complexity 3 77 0 5 1481 281 183 43 11 chr6 117493434 117493528 -32023509 + G-rich Low_complexity Low_complexity 1 97 0 5 1481 313 254 55 84 chr6 117493587 117493824 -32023213 - L1MEe LINE L1 -4130 724 495 5 1481 353 313 24 6 chr6 117494193 117494357 -32022680 + L1MA4 LINE L1 5693 5859 -441 5 1481 268 263 10 21 chr6 117495401 117495498 -32021539 + L1MB3 LINE L1 6022 6117 -66 5 1481 290 341 84 84 chr6 117495511 117495786 -32021251 - ORR1E LTR MaLR -33 326 52 5 1481 428 219 25 2 chr6 117495843 117495965 -32021072 - ORR1E-int LTR MaLR -73 1297 1200 5 1481 1566 287 50 26 chr6 117496014 117496597 -32020440 + Lx9 LINE L1 6784 7380 -264 5 1481 429 20 0 0 chr6 117496615 117496665 -32020372 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1481 641 195 86 0 chr6 117496836 117496964 -32020073 - B1_Mur4 SINE Alu -8 142 4 5 1481 952 310 26 0 chr6 117496981 117497284 -32019753 - MTE-int LTR MaLR -252 1328 1018 5 1481 227 222 0 36 chr6 117497299 117497355 -32019682 + CT-rich Low_complexity Low_complexity 4 57 0 5 1481 324 248 59 10 chr6 117497509 117497611 -32019426 + MLT1B LTR MaLR 281 387 -3 5 1481 671 294 87 4 chr6 117497900 117498166 -32018871 - MLT1A LTR MaLR -46 328 41 5 1481 2466 128 51 25 chr6 117498291 117498786 -32018251 - RMER4B LTR ERVK -3 463 1 5 1481 408 269 77 33 chr6 117498803 117498984 -32018053 + MLT1A1 LTR MaLR 216 404 -4 5 1481 236 345 72 72 chr6 117499524 117499883 -32017154 - ORR1E LTR MaLR 0 359 1 5 1481 225 83 0 0 chr6 117499929 117499965 -32017072 - B3 SINE B2 -3 213 178 5 1481 210 71 0 0 chr6 117500059 117500087 -32016950 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1481 450 224 77 25 chr6 117500088 117500279 -32016758 - RLTR20D LTR ERVK -355 223 1 2 1481 929 174 0 0 chr6 117500279 117500428 -32016609 - B3 SINE B2 -67 149 1 3 1481 318 26 0 0 chr6 117502040 117502079 -32014958 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 1481 304 97 32 0 chr6 117502135 117502197 -32014840 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1481 309 295 61 18 chr6 117502245 117502359 -32014678 - B4A SINE B4 -23 269 151 6 1481 405 0 0 0 chr6 117503384 117503429 -32013608 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1481 21 36 0 0 chr6 117504623 117504651 -32012386 + AT_rich Low_complexity Low_complexity 1 28 0 8 1481 201 74 0 0 chr6 117505219 117505246 -32011791 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 9 1481 3243 53 2 2 chr6 117505256 117505652 -32011385 - MTA_Mm LTR MaLR 0 396 1 1 1481 863 126 35 0 chr6 117507520 117507663 -32009374 + B1_Mur4 SINE Alu 3 150 0 1 1481 239 50 0 48 chr6 117507771 117507813 -32009224 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 1 1481 384 313 40 0 chr6 117507870 117508020 -32009017 - MER33 DNA MER1_type -1 323 168 1 1481 466 176 99 51 chr6 117508351 117508542 -32008495 + L1MA5A LINE L1 5721 5928 -372 1 1481 351 0 0 0 chr6 117508552 117508591 -32008446 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 1 1481 1269 225 72 12 chr6 117508594 117508923 -32008114 + MTD LTR MaLR 20 379 -21 1 1481 331 294 157 34 chr6 117508942 117509178 -32007859 + L1MA5A LINE L1 5921 6185 -115 1 1481 464 196 53 53 chr6 117509189 117509302 -32007735 + B1F SINE Alu 2 114 -3 1 1481 2029 197 174 4 chr6 117509531 117509984 -32007053 + MT2A LTR ERVL 1 530 -3 1 1481 327 312 15 30 chr6 117511171 117511303 -32005734 + MIRc SINE MIR 17 146 -122 1 1481 318 274 117 10 chr6 117512869 117512972 -32004065 + MLT2B2 LTR ERVL 369 482 -80 2 1481 438 96 0 0 chr6 117513022 117513095 -32003942 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 2 1481 281 228 15 42 chr6 117513729 117513853 -32003184 - MIR SINE MIR -1 261 148 2 1481 528 16 0 0 chr6 117514140 117514201 -32002836 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1481 417 39 0 0 chr6 117514996 117515047 -32001990 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1481 2970 70 58 0 chr6 117515485 117515883 -32001154 - BGLII_Mus LTR ERVK -1 421 1 2 1481 856 298 8 4 chr6 117517960 117518203 -31998834 + B4 SINE B4 2 245 -47 2 1481 21 0 0 0 chr6 117518213 117518234 -31998803 + AT_rich Low_complexity Low_complexity 1 21 0 2 1481 222 235 0 0 chr6 117518234 117518285 -31998752 + A-rich Low_complexity Low_complexity 1 51 0 2 1481 283 188 22 111 chr6 117518365 117518455 -31998582 - MT2B2 LTR ERVL -328 256 175 2 1481 450 206 0 0 chr6 117518390 117518463 -31998574 - B1_Mus2 SINE Alu -72 75 3 3 1481 23 54 0 0 chr6 117518528 117518565 -31998472 + AT_rich Low_complexity Low_complexity 1 37 0 3 1481 251 305 24 0 chr6 117518887 117518969 -31998068 + GA-rich Low_complexity Low_complexity 2 85 0 3 1481 731 108 43 7 chr6 117519067 117519207 -31997830 + GA-rich Low_complexity Low_complexity 4 148 0 3 1481 206 252 168 37 chr6 117520145 117520252 -31996785 + MER91B DNA Tip100 30 150 -40 3 1481 287 273 20 20 chr6 117520332 117520433 -31996604 + GA-rich Low_complexity Low_complexity 1 101 0 3 1481 205 182 0 0 chr6 117522342 117522375 -31994662 + A-rich Low_complexity Low_complexity 3 35 0 3 1481 315 0 0 0 chr6 117523837 117523872 -31993165 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 3 1481 349 198 17 102 chr6 117524869 117524987 -31992050 + MT2B LTR ERVL 157 264 -337 3 1481 610 148 61 0 chr6 117524886 117525001 -31992036 + B1_Mus2 SINE Alu 5 126 -21 3 1481 205 88 0 29 chr6 117525001 117525036 -31992001 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1481 306 0 0 0 chr6 117525058 117525092 -31991945 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 4 1481 584 242 100 67 chr6 117525809 117526048 -31990989 - MER44A DNA MER2_type -10 329 83 4 1481 252 301 97 9 chr6 117526118 117526232 -31990805 - Tigger5 DNA MER2_type -2282 124 1 4 1481 1535 255 80 23 chr6 117529652 117530214 -31986823 + L1MA4 LINE L1 5345 5938 -362 4 1481 489 279 27 122 chr6 117530656 117530950 -31986087 - ORR1E LTR MaLR -7 352 87 4 1481 580 227 81 68 chr6 117532512 117532673 -31984364 - RSINE1 SINE B4 0 165 3 4 1481 402 21 0 0 chr6 117533999 117534046 -31982991 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1481 2028 235 96 25 chr6 117534567 117535332 -31981705 + L1_Rod LINE L1 1088 1912 -3935 4 1481 1700 153 29 23 chr6 117535333 117535675 -31981362 - IAPLTR1_Mm LTR ERVK -23 344 1 4 1481 56409 21 18 6 chr6 117535675 117542072 -31974965 - IAPEz-int LTR ERVK 0 6481 8 4 1481 2043 129 47 41 chr6 117542072 117542437 -31974600 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1481 5037 234 52 48 chr6 117542437 117544155 -31972882 + L1_Rod LINE L1 1689 3413 -2434 5 1481 261 279 142 66 chr6 117544183 117544311 -31972726 + Lx9 LINE L1 7317 7461 -183 5 1481 294 125 0 0 chr6 117544311 117544359 -31972678 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1481 261 279 142 66 chr6 117544359 117544533 -31972504 + Lx9 LINE L1 7462 7642 -2 5 1481 3079 149 8 6 chr6 117544807 117545328 -31971709 + RLTR11A LTR ERVK 1 522 -6 5 1481 1070 171 194 45 chr6 117545333 117545689 -31971348 + RLTR9E LTR ERVK 1 409 0 5 1481 428 224 6 0 chr6 117547548 117547718 -31969319 + (TG)n Simple_repeat Simple_repeat 1 171 0 5 1481 186 71 0 0 chr6 117547751 117547779 -31969258 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1481 391 301 21 52 chr6 117547808 117548001 -31969036 - L1MA4 LINE L1 -370 5930 5744 5 1481 553 284 74 50 chr6 117547987 117548350 -31968687 - L1MA4 LINE L1 -743 5400 5029 5 1481 407 219 44 96 chr6 117548514 117548650 -31968387 - RSINE1 SINE B4 -34 131 3 5 1481 3520 279 108 28 chr6 117548655 117550555 -31966482 - L1MA4 LINE L1 -1189 4954 2902 5 1481 437 271 39 0 chr6 117550547 117550702 -31966335 - L1_Rod LINE L1 -3129 2718 2558 5 1481 43 81 0 0 chr6 117550876 117550975 -31966062 + AT_rich Low_complexity Low_complexity 1 99 0 5 1481 1082 248 78 52 chr6 117551280 117551628 -31965409 + ORR1D2 LTR MaLR 10 366 -4 6 1481 614 284 79 24 chr6 117551630 117551922 -31965115 - L1M1 LINE L1 -512 5791 5484 6 1481 1621 298 196 29 chr6 117552024 117552143 -31964894 - Lx8 LINE L1 -341 7132 7011 6 1481 1151 89 0 0 chr6 117552143 117552289 -31964748 - B1_Mus1 SINE Alu -2 146 1 6 1481 1621 298 196 29 chr6 117552289 117552777 -31964260 - Lx8 LINE L1 -463 7010 6403 6 1481 2123 134 30 70 chr6 117552777 117553177 -31963860 + ORR1C2 LTR MaLR 1 384 0 6 1481 1621 280 246 27 chr6 117553177 117554118 -31962919 - Lx8 LINE L1 -1071 6402 5239 6 1481 219 69 0 0 chr6 117554118 117554147 -31962890 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1481 636 296 35 29 chr6 117554147 117554240 -31962797 - Lx8 LINE L1 -642 5238 5145 6 1481 205 104 61 20 chr6 117554835 117554884 -31962153 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 6 1481 189 121 0 0 chr6 117555171 117555204 -31961833 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 6 1481 648 152 5 33 chr6 117557522 117557706 -31959331 + GA-rich Low_complexity Low_complexity 1 179 0 6 1481 586 160 76 0 chr6 117557768 117557887 -31959150 - MTD LTR MaLR -291 128 1 6 1481 293 261 0 30 chr6 117558093 117558160 -31958877 - MER2 DNA MER2_type -1 344 280 7 1481 253 118 39 0 chr6 117558303 117558354 -31958683 + CT-rich Low_complexity Low_complexity 2 54 0 7 1481 375 195 65 23 chr6 117558444 117558545 -31958492 + MTEa LTR MaLR 278 379 0 7 1481 830 298 26 19 chr6 117558553 117558820 -31958217 - MER2 DNA MER2_type -71 274 6 7 1481 1398 174 406 8 chr6 117558820 117559219 -31957818 + RMER19C LTR ERVK 1 558 -53 7 1481 189 195 0 68 chr6 117559469 117559513 -31957524 + MIRm SINE MIR 207 247 -29 7 1481 383 172 238 0 chr6 117560387 117560509 -31956528 + L1MC5 LINE L1 7292 7442 -519 7 1481 264 255 145 20 chr6 117560696 117560848 -31956189 + L1MC5 LINE L1 7735 7905 -56 7 1481 304 143 45 45 chr6 117562757 117562867 -31954170 + T-rich Low_complexity Low_complexity 2 111 0 7 1481 997 135 189 38 chr6 117563299 117563484 -31953553 + B3 SINE B2 1 213 -3 7 1481 227 146 24 24 chr6 117565006 117565048 -31951989 + RMER5 LTR ERV1 33 74 -460 7 1481 648 257 64 96 chr6 117565055 117565305 -31951732 + RMER5 LTR ERV1 293 534 0 7 1481 351 0 0 0 chr6 117565632 117565671 -31951366 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1481 198 0 0 0 chr6 117565671 117565692 -31951345 + (GA)n Simple_repeat Simple_repeat 2 23 0 8 1481 273 135 38 19 chr6 117565780 117565833 -31951204 + MLT1A1 LTR MaLR 339 392 -16 8 1481 447 101 0 0 chr6 117566310 117566389 -31950648 + (CATA)n Simple_repeat Simple_repeat 1 79 0 8 1481 244 260 37 49 chr6 117566941 117567022 -31950015 + L3 LINE CR1 4313 4392 -97 8 1481 1528 259 136 24 chr6 117567139 117567602 -31949435 - MLT2B1 LTR ERVL -5 515 1 8 1481 5624 158 28 39 chr6 117568129 117569168 -31947869 - RLTR25B LTR ERVK 0 1028 1 8 1481 333 305 0 0 chr6 117570997 117571171 -31945866 + (TG)n Simple_repeat Simple_repeat 1 174 0 8 1481 475 288 24 0 chr6 117571241 117571366 -31945671 - B1F SINE Alu 0 149 22 8 185 314 301 172 8 chr6 117571577 117571711 -31945326 + MER2 DNA MER2_type 167 322 -23 8 1482 359 263 154 46 chr6 117572029 117572288 -31944749 + L1M2 LINE L1 2995 3281 -2862 9 1482 450 49 0 0 chr6 117572295 117572356 -31944681 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1482 387 0 0 0 chr6 117572356 117572398 -31944639 + (GA)n Simple_repeat Simple_repeat 1 43 0 9 1482 432 0 0 0 chr6 117573443 117573491 -31943546 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 9 1482 387 0 0 0 chr6 117573642 117573685 -31943352 + (TTG)n Simple_repeat Simple_repeat 2 44 0 9 1482 654 301 39 108 chr6 117573768 117574106 -31942931 + MLT1H1 LTR MaLR 32 407 -188 9 1482 1192 62 0 0 chr6 117574570 117574716 -31942321 + B1_Mus2 SINE Alu 1 146 -1 9 1482 197 77 51 0 chr6 117574716 117574755 -31942282 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 9 1482 333 93 0 0 chr6 117574922 117574976 -31942061 + (GA)n Simple_repeat Simple_repeat 1 54 0 9 1482 192 77 0 0 chr6 117575064 117575090 -31941947 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 9 1482 345 125 0 0 chr6 117576041 117576097 -31940940 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1482 1888 152 63 9 chr6 117578703 117579034 -31938003 - ORR1B1 LTR MaLR -5 389 41 1 1482 247 243 134 101 chr6 117579057 117579176 -31937861 - MLT1A1 LTR MaLR -12 396 274 1 1482 2885 28 0 3 chr6 117582017 117582345 -31934692 - IAPLTR2b LTR ERVK 0 327 1 1 1482 192 40 0 0 chr6 117582396 117582421 -31934616 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1482 498 46 0 0 chr6 117582423 117582488 -31934549 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 1 1482 517 143 0 0 chr6 117582488 117582565 -31934472 + MTD LTR MaLR 343 419 0 1 1482 3268 236 52 87 chr6 117582567 117583426 -31933611 + MTD-int LTR MaLR 1 1004 -254 1 1482 2475 168 10 5 chr6 117583426 117583844 -31933193 + MTC LTR MaLR 1 420 -1 1 1482 3268 217 44 84 chr6 117583844 117584172 -31932865 + MTD-int LTR MaLR 890 1248 -10 1 1482 306 0 0 0 chr6 117584201 117584235 -31932802 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1482 1981 198 47 25 chr6 117584245 117584650 -31932387 + MTD LTR MaLR 6 419 0 1 1482 4484 14 2 0 chr6 117584810 117585302 -31931735 - MT2_Mm LTR ERVL 0 493 1 1 1482 319 0 0 0 chr6 117585302 117585340 -31931697 - MERVL-int LTR ERVL 0 5485 5448 1 1482 400 167 46 35 chr6 117585340 117585427 -31931610 - ORR1A3-int LTR MaLR -1323 640 553 1 1482 41393 16 14 0 chr6 117585427 117590714 -31926323 - MERVL-int LTR ERVL -125 5360 1 1 1482 4484 14 2 0 chr6 117590714 117591206 -31925831 - MT2_Mm LTR ERVL 0 493 1 1 1482 628 328 83 48 chr6 117591366 117591930 -31925107 + L1MC1 LINE L1 5735 6318 -15 1 1482 395 242 70 35 chr6 117592202 117592349 -31924688 - MLT1A0 LTR MaLR 0 408 225 1 1482 685 224 96 101 chr6 117593081 117593280 -31923757 + B3A SINE B2 1 198 0 1 1482 194 246 120 88 chr6 117594347 117594472 -31922565 + MIR SINE MIR 64 192 -70 1 1482 977 202 61 0 chr6 117594657 117594855 -31922182 + B3 SINE B2 2 211 -5 1 1482 378 262 67 26 chr6 117594859 117595178 -31921859 + L1M4 LINE L1 5128 5454 -740 1 1482 252 174 0 21 chr6 117595186 117595233 -31921804 - MLT1A1 LTR MaLR -6 402 357 1 1482 558 303 121 88 chr6 117595238 117595812 -31921225 + L2a LINE L2 2578 3174 -252 1 1482 197 271 240 0 chr6 117595868 117595964 -31921073 + L2a LINE L2 3307 3425 -1 1 1482 27 0 0 0 chr6 117596094 117596121 -31920916 + AT_rich Low_complexity Low_complexity 1 27 0 1 1482 575 258 97 116 chr6 117597395 117597586 -31919451 + MTEb LTR MaLR 124 317 -62 1 1482 701 221 0 51 chr6 117597586 117597743 -31919294 - B1_Mur2 SINE Alu 0 149 1 1 1482 575 258 97 116 chr6 117597743 117597810 -31919227 + MTEb LTR MaLR 318 377 -2 1 1482 928 284 36 52 chr6 117597812 117598232 -31918805 + L1M2 LINE L1 4808 5220 -923 1 1482 311 244 199 11 chr6 117598516 117598702 -31918335 - L1M3 LINE L1 -944 5196 4976 1 1482 337 176 314 0 chr6 117599737 117599839 -31917198 - B1F2 SINE Alu -8 141 8 1 1482 241 289 0 57 chr6 117599965 117600053 -31916984 + CT-rich Low_complexity Low_complexity 4 86 0 1 1482 189 74 0 0 chr6 117600927 117600954 -31916083 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 1482 228 271 178 20 chr6 117601440 117601616 -31915421 + MIR SINE MIR 13 200 -68 1 1482 390 242 179 18 chr6 117602536 117602572 -31914465 - B2_Mm2 SINE B2 0 195 156 1 1482 243 0 0 0 chr6 117602572 117602599 -31914438 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1482 599 84 0 10 chr6 117602599 117602694 -31914343 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1482 436 217 168 1 chr6 117602694 117602824 -31914213 - B3A SINE B2 -40 155 1 1 1482 396 0 0 0 chr6 117603647 117603691 -31913346 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1482 478 253 102 34 chr6 117604516 117604692 -31912345 - MIR SINE MIR -69 193 6 1 1482 933 9 0 0 chr6 117604859 117604965 -31912072 + (TC)n Simple_repeat Simple_repeat 1 106 0 1 1482 441 0 0 0 chr6 117604965 117605013 -31912024 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1482 199 225 67 101 chr6 117607315 117607404 -31909633 - MIR3 SINE MIR -11 197 112 1 1482 237 319 0 144 chr6 117607508 117607647 -31909390 - MLT1G LTR MaLR -456 135 17 1 1482 606 273 80 44 chr6 117608148 117608374 -31908663 + B4A SINE B4 3 236 -56 1 1482 486 0 0 0 chr6 117608390 117608444 -31908593 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1482 453 19 0 0 chr6 117608444 117608497 -31908540 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1482 512 281 97 15 chr6 117608769 117608964 -31908073 - RMER15 LTR ERVL -14 561 351 1 1482 2173 100 58 0 chr6 117609154 117609463 -31907574 + ORR1A2 LTR MaLR 1 327 0 1 1482 537 16 0 0 chr6 117610407 117610469 -31906568 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1482 403 328 52 0 chr6 117611009 117611125 -31905912 + RSINE1 SINE B4 29 150 -15 1 1482 198 0 0 0 chr6 117611144 117611166 -31905871 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1 1482 214 167 60 15 chr6 117611185 117611252 -31905785 + (TTATA)n Simple_repeat Simple_repeat 2 71 0 1 1482 627 231 63 44 chr6 117611355 117611713 -31905324 + L1_Rod LINE L1 1051 1412 -4435 1 1482 612 209 45 37 chr6 117612089 117612223 -31904814 - B3A SINE B2 -62 136 2 1 1482 256 259 0 0 chr6 117612223 117612281 -31904756 + L1_Rod LINE L1 1781 1838 -4009 1 1482 336 268 46 23 chr6 117612287 117612417 -31904620 + L1_Mur3 LINE L1 2406 2538 -3342 1 1482 242 289 28 28 chr6 117612496 117612595 -31904442 - MTE2a LTR MaLR 0 379 281 1 1482 304 89 158 18 chr6 117612595 117612652 -31904385 - ORR1C2 LTR MaLR 0 384 320 1 1482 902 241 19 19 chr6 117613140 117613347 -31903690 + B3 SINE B2 3 209 -7 1 1482 929 203 151 13 chr6 117614781 117615020 -31902017 + Tigger5 DNA MER2_type 2135 2406 0 1 1482 189 0 0 0 chr6 117615042 117615063 -31901974 + (CAA)n Simple_repeat Simple_repeat 2 22 0 1 1482 330 319 44 0 chr6 117615075 117615166 -31901871 + B1F1 SINE Alu 2 96 -53 1 1482 207 0 0 0 chr6 117615659 117615682 -31901355 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1482 318 129 0 0 chr6 117615923 117615985 -31901052 + (TTCG)n Simple_repeat Simple_repeat 3 64 0 1 1482 894 44 9 0 chr6 117615987 117616101 -31900936 - B1_Mus1 SINE Alu -1 147 33 1 1482 1137 85 11 6 chr6 117616959 117617136 -31899901 + (TTC)n Simple_repeat Simple_repeat 2 179 0 1 1482 6892 107 3 5 chr6 117617170 117618119 -31898918 + Lx4A LINE L1 6111 7057 -1 1 1482 664 321 8 12 chr6 117618210 117618456 -31898581 + Lx9 LINE L1 7103 7347 -297 1 1482 881 312 49 42 chr6 117618662 117619114 -31897923 + L1MA4A LINE L1 5473 5927 -376 1 1482 432 0 0 0 chr6 117619132 117619180 -31897857 + (TTTTG)n Simple_repeat Simple_repeat 1 48 0 1 1482 1076 60 0 22 chr6 117619180 117619317 -31897720 - B1_Mm SINE Alu -13 134 1 1 1482 937 265 141 15 chr6 117619378 117619704 -31897333 + ORR1D1 LTR MaLR 8 374 0 1 1482 238 229 0 32 chr6 117619704 117619767 -31897270 + ORR1D1-int LTR MaLR 1 61 -1309 1 1482 2640 101 69 29 chr6 117619887 117620306 -31896731 + Lx LINE L1 6214 6649 -5 1 1482 229 296 0 123 chr6 117620321 117620402 -31896635 - B1F SINE Alu -77 72 2 1 1482 265 316 105 81 chr6 117620496 117620620 -31896417 - ID_B1 SINE B4 -16 208 82 1 1482 817 118 58 22 chr6 117622259 117622397 -31894640 + B3 SINE B2 74 216 0 1 1482 405 0 0 0 chr6 117622782 117622827 -31894210 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 1 1482 451 156 124 10 chr6 117622931 117623028 -31894009 + B1_Mus2 SINE Alu 17 124 -23 1 1482 500 81 0 13 chr6 117623032 117623107 -31893930 + (GA)n Simple_repeat Simple_repeat 2 75 0 1 1482 632 271 39 11 chr6 117623713 117623892 -31893145 + MLT2B4 LTR ERVL 23 206 -350 1 1482 228 242 29 88 chr6 117623891 117623959 -31893078 + MLT2B4 LTR ERVL 434 497 -70 1 1482 678 244 0 0 chr6 117623959 117624267 -31892770 + (CA)n Simple_repeat Simple_repeat 1 308 0 1 1482 617 227 0 11 chr6 117624269 117624447 -31892590 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 1 1482 233 274 0 0 chr6 117624447 117624498 -31892539 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1482 1369 259 30 51 chr6 117625137 117625508 -31891529 + ORR1D2 LTR MaLR 1 363 -7 1 1482 356 192 11 73 chr6 117625916 117626107 -31890930 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1482 314 218 13 13 chr6 117626169 117626327 -31890710 + (CA)n Simple_repeat Simple_repeat 1 158 0 1 1482 300 53 0 0 chr6 117626985 117627023 -31890014 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 1 1482 236 352 72 25 chr6 117628265 117628501 -31888536 - L1M6 LINE L1 -5468 1028 782 1 1482 1016 228 141 4 chr6 117628728 117628997 -31888040 + MLT1A0 LTR MaLR 60 365 0 1 1482 291 333 60 80 chr6 117629071 117629221 -31887816 - MIRb SINE MIR -34 234 88 1 1482 1221 291 45 21 chr6 117629353 117629437 -31887600 - MTEa LTR MaLR -29 350 264 1 1482 3330 120 259 3 chr6 117629437 117630024 -31887013 - RMER19A LTR ERVK 0 737 1 1 1482 2063 128 130 3 chr6 117630024 117630367 -31886670 - ORR1B1 LTR MaLR -4 390 1 1 1482 1221 291 45 21 chr6 117630367 117630618 -31886419 - MTEa LTR MaLR -116 263 7 1 1482 2561 253 33 17 chr6 117630623 117631255 -31885782 - MTEa-int LTR MaLR -3 1577 936 1 1482 2096 242 32 7 chr6 117631236 117631673 -31885364 - MTEa-int LTR MaLR -1115 465 18 1 1482 1036 306 58 9 chr6 117631671 117631997 -31885040 - MTEa LTR MaLR -37 342 1 1 1482 551 383 58 36 chr6 117632250 117632613 -31884424 - MLT1I LTR MaLR -1 410 40 1 1482 432 0 0 0 chr6 117633198 117633246 -31883791 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1482 342 168 8 42 chr6 117633519 117633637 -31883400 + C-rich Low_complexity Low_complexity 1 114 0 1 1482 295 224 0 34 chr6 117633638 117633726 -31883311 + CT-rich Low_complexity Low_complexity 1 85 0 1 1482 288 53 0 0 chr6 117633900 117633938 -31883099 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1482 4190 44 12 0 chr6 117633957 117634459 -31882578 - L1Md_F3 LINE L1 -14 6570 6063 1 1482 476 189 9 62 chr6 117634540 117634653 -31882384 - Lx3C LINE L1 -346 6630 6524 1 1482 377 271 80 61 chr6 117635982 117636194 -31880843 + L1MC5 LINE L1 7000 7215 -746 1 1482 321 290 7 14 chr6 117636569 117636716 -31880321 + L1MC5 LINE L1 7609 7754 -207 1 1482 4062 173 30 32 chr6 117636873 117637786 -31879251 + RMER1B Other Other 69 1061 -5 1 1482 205 392 16 16 chr6 117638592 117638719 -31878318 + MIRb SINE MIR 3 129 -139 1 1482 668 210 169 11 chr6 117639432 117639615 -31877422 + B3 SINE B2 5 216 0 1 1482 261 366 42 0 chr6 117639688 117639842 -31877195 - MIR SINE MIR -105 171 5 1 1482 504 262 5 5 chr6 117640025 117640251 -31876786 + (TG)n Simple_repeat Simple_repeat 1 226 0 1 1482 591 27 0 0 chr6 117640626 117640699 -31876338 + (GTTTG)n Simple_repeat Simple_repeat 2 74 0 1 1482 1162 62 0 20 chr6 117640699 117640838 -31876199 - B1_Mus1 SINE Alu -9 139 1 2 1482 2615 131 38 2 chr6 117641674 117642072 -31874965 - MTC LTR MaLR -9 412 1 2 1482 37016 71 1 25 chr6 117642098 117648392 -31868645 + L1Md_T LINE L1 99 5586 -297 2 1482 8171 57 0 0 chr6 117648392 117649409 -31867628 + L1Md_T LINE L1 5587 6582 0 2 1482 186 43 0 0 chr6 117650839 117650862 -31866175 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 2 1482 211 281 13 129 chr6 117651066 117651221 -31865816 + L2b LINE L2 3207 3374 -52 2 1482 207 0 0 0 chr6 117651434 117651457 -31865580 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1482 191 293 128 8 chr6 117651648 117651765 -31865272 - L2 LINE L2 -541 2878 2748 2 1482 229 247 51 133 chr6 117653661 117653759 -31863278 + Charlie2b DNA MER1_type 1598 1687 -1095 2 1482 1095 103 0 0 chr6 117653906 117654052 -31862985 + B1_Mm SINE Alu 2 147 0 2 1482 368 237 422 10 chr6 117654065 117654258 -31862779 + ORR1D2 LTR MaLR 13 285 -85 2 1482 485 194 6 0 chr6 117654258 117654433 -31862604 + (TCTCTG)n Simple_repeat Simple_repeat 4 179 0 2 1482 291 26 26 0 chr6 117654434 117654473 -31862564 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1482 219 125 61 30 chr6 117654486 117654552 -31862485 + (CATG)n Simple_repeat Simple_repeat 1 68 0 2 1482 1696 216 156 9 chr6 117656004 117656355 -31860682 + RLTR16 LTR ERVK 1 413 -92 2 1482 775 107 12 17 chr6 117656355 117656527 -31860510 + (TG)n Simple_repeat Simple_repeat 2 172 0 2 1482 1696 216 156 9 chr6 117656527 117656605 -31860432 + RLTR16 LTR ERVK 414 492 -13 2 1482 235 315 77 58 chr6 117657689 117657844 -31859193 + MIRb SINE MIR 34 191 -77 2 1482 371 273 189 0 chr6 117658335 117658478 -31858559 + B3A SINE B2 29 198 0 2 1482 378 0 0 0 chr6 117658517 117658559 -31858478 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1482 966 250 5 19 chr6 117658669 117658877 -31858160 - B3 SINE B2 -11 205 1 2 1482 502 289 29 65 chr6 117660223 117660393 -31856644 + RSINE1 SINE B4 2 165 0 2 1482 341 183 0 0 chr6 117661085 117661145 -31855892 + Lx9 LINE L1 7209 7268 -376 2 1482 655 190 17 0 chr6 117661197 117661313 -31855724 - B1_Mur4 SINE Alu -2 148 31 2 1482 1563 128 48 15 chr6 117661317 117661586 -31855451 - ORR1C2 LTR MaLR 0 384 107 2 1482 349 230 0 94 chr6 117661764 117661860 -31855177 + PB1D9 SINE Alu 3 89 -31 2 1482 290 233 0 48 chr6 117662458 117662499 -31854538 - tRNA-Ala-GCY_ tRNA tRNA -13 62 24 2 1482 1626 154 9 73 chr6 117662499 117662843 -31854194 - RLTRETN_Mm LTR ERVK 0 322 1 2 1482 290 233 0 48 chr6 117662843 117662864 -31854173 - tRNA-Ala-GCY_ tRNA tRNA -52 23 3 2 1482 1029 179 76 10 chr6 117662906 117663070 -31853967 + B3 SINE B2 5 183 -33 2 1482 518 0 16 0 chr6 117663070 117663132 -31853905 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2 1482 1029 179 76 10 chr6 117663132 117663164 -31853873 + B3 SINE B2 184 214 -2 2 1482 391 310 9 0 chr6 117664109 117664222 -31852815 + PB1D10 SINE Alu 2 115 -2 2 1482 265 262 0 16 chr6 117664222 117664284 -31852753 + GA-rich Low_complexity Low_complexity 2 62 0 2 1482 2261 105 149 0 chr6 117664419 117664762 -31852275 - ORR1B1 LTR MaLR 0 394 1 2 1482 218 296 42 0 chr6 117665477 117665548 -31851489 + MER5B DNA MER1_type 36 109 -69 2 1482 1241 36 0 0 chr6 117666360 117666525 -31850512 + RLTR45-int LTR ERVK 1013 1177 -6067 2 1482 1140 26 0 85 chr6 117666703 117666868 -31850169 + RLTR45-int LTR ERVK 1176 1326 -5918 2 1482 207 191 0 0 chr6 117667362 117667404 -31849633 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1482 207 0 0 0 chr6 117668885 117668908 -31848129 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1482 584 311 70 0 chr6 117669375 117669616 -31847421 + L1MB3 LINE L1 5743 6000 -183 2 1482 518 208 21 45 chr6 117669798 117670137 -31846900 + G-rich Low_complexity Low_complexity 1 330 0 2 1482 256 251 27 44 chr6 117670096 117670279 -31846758 + GA-rich Low_complexity Low_complexity 1 180 0 2 1482 540 0 0 0 chr6 117670305 117670365 -31846672 + (GGAAA)n Simple_repeat Simple_repeat 1 60 0 2 1482 2761 82 3 17 chr6 117670886 117671248 -31845789 - RLTR10D LTR ERVK 0 359 3 2 1482 44939 65 21 10 chr6 117671250 117676930 -31840107 - IAP-d-int LTR ERVK 0 6542 797 2 1482 2695 87 6 16 chr6 117677639 117678002 -31839035 - RLTR10D LTR ERVK 0 359 1 2 1482 557 331 3 22 chr6 117679632 117679882 -31837155 + G-rich Low_complexity Low_complexity 1 245 0 2 1482 298 242 6 38 chr6 117679898 117680057 -31836980 + G-rich Low_complexity Low_complexity 1 154 0 2 1482 227 213 0 74 chr6 117680058 117680303 -31836734 + GA-rich Low_complexity Low_complexity 1 226 0 2 1482 252 132 0 0 chr6 117680338 117680376 -31836661 + MTC LTR MaLR 3 40 -381 2 1482 213 212 0 78 chr6 117680438 117680566 -31836471 + GA-rich Low_complexity Low_complexity 1 118 0 2 1482 212 250 0 20 chr6 117680578 117680627 -31836410 + GA-rich Low_complexity Low_complexity 1 48 0 2 1482 326 353 25 44 chr6 117680628 117680788 -31836249 + HAL1-3A_ME LINE L1 2285 2441 -417 2 1482 283 315 11 22 chr6 117680788 117680879 -31836158 + G-rich Low_complexity Low_complexity 3 92 0 2 1482 261 191 21 70 chr6 117680894 117681080 -31835957 + GA-rich Low_complexity Low_complexity 2 178 0 2 1482 3163 53 8 8 chr6 117681089 117681485 -31835552 + MTA_Mm LTR MaLR 1 396 0 2 1482 8839 51 8 2 chr6 117681485 117682576 -31834461 + MTA_Mm-int LTR MaLR 1 1098 0 2 1482 2857 66 45 5 chr6 117682576 117682957 -31834080 + MTA_Mm LTR MaLR 1 396 0 2 1482 297 205 15 59 chr6 117682994 117683129 -31833908 + GA-rich Low_complexity Low_complexity 1 129 0 2 1482 203 146 0 24 chr6 117683175 117683217 -31833820 + GA-rich Low_complexity Low_complexity 1 41 0 2 1482 11056 84 24 12 chr6 117686230 117689029 -31828008 - L1Md_Gf LINE L1 -2653 3233 160 2 1482 495 135 14 0 chr6 117692697 117692771 -31824266 + L1VL1 LINE L1 192 266 -6156 2 1482 33981 65 12 6 chr6 117692771 117697843 -31819194 + L1Md_F2 LINE L1 480 5586 -297 2 1482 7487 58 39 14 chr6 117697844 117698811 -31818226 + L1Md_F2 LINE L1 5588 6578 -4 2 1482 281 347 13 32 chr6 117698987 117699142 -31817895 - MLT1B LTR MaLR -122 268 117 2 1482 5002 119 33 9 chr6 117699322 117700112 -31816925 + RMER17D2 LTR ERVK 1 809 0 2 1482 462 18 0 0 chr6 117700452 117700507 -31816530 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1482 474 18 0 0 chr6 117700955 117701010 -31816027 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1482 197 33 33 0 chr6 117702219 117702249 -31814788 + (CATA)n Simple_repeat Simple_repeat 1 31 0 2 1482 691 241 80 25 chr6 117702322 117702522 -31814515 + B3 SINE B2 5 215 -1 2 185 727 238 0 7 chr6 117702524 117702672 -31814365 + B1_Mus1 SINE Alu 1 147 -1 2 1483 21 36 0 0 chr6 117702686 117702714 -31814323 + AT_rich Low_complexity Low_complexity 1 28 0 2 1483 2244 156 19 13 chr6 117703109 117703485 -31813552 + ORR1C1 LTR MaLR 1 378 0 2 1483 3241 48 10 2 chr6 117704372 117704765 -31812272 - MTA_Mm LTR MaLR 0 396 1 2 1483 21 0 0 0 chr6 117704891 117704912 -31812125 + AT_rich Low_complexity Low_complexity 1 21 0 2 1483 1337 66 39 0 chr6 117705637 117705819 -31811218 + L1_Mus2 LINE L1 6378 6566 0 2 1483 279 0 0 0 chr6 117705872 117705903 -31811134 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1483 579 209 96 15 chr6 117706719 117706855 -31810182 - B1F SINE Alu -2 147 1 2 1483 1177 150 120 0 chr6 117706918 117707118 -31809919 - URR1A DNA MER1_type -2 224 1 2 1483 236 358 125 5 chr6 117707240 117707456 -31809581 + L3 LINE CR1 3790 4031 -458 2 1483 306 0 0 0 chr6 117707533 117707567 -31809470 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1483 288 218 70 93 chr6 117707578 117707657 -31809380 - B4A SINE B4 -14 278 202 2 1483 1865 184 30 32 chr6 117707657 117708027 -31809010 - RLTR17 LTR ERVK 0 692 324 2 1483 1128 204 19 0 chr6 117708212 117708418 -31808619 + B3 SINE B2 2 211 -5 2 1483 21 0 0 0 chr6 117708568 117708589 -31808448 + AT_rich Low_complexity Low_complexity 1 21 0 2 1483 29 28 0 0 chr6 117708608 117708644 -31808393 + AT_rich Low_complexity Low_complexity 1 36 0 2 1483 222 196 0 0 chr6 117709107 117709153 -31807884 + C-rich Low_complexity Low_complexity 1 46 0 2 1483 340 155 108 40 chr6 117709200 117709274 -31807763 - Lx6 LINE L1 -1237 6223 6145 2 1483 450 0 0 0 chr6 117709280 117709330 -31807707 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1483 320 217 0 16 chr6 117709783 117709844 -31807193 - HAL1-3A_ME LINE L1 -824 2034 1975 2 1483 397 301 0 115 chr6 117709861 117710000 -31807037 - B3 SINE B2 -5 211 89 2 1483 634 266 57 19 chr6 117710063 117710220 -31806817 - B3 SINE B2 -1 215 53 2 1483 360 307 11 0 chr6 117710211 117710299 -31806738 + RSINE1 SINE B4 53 141 -24 2 1483 329 359 26 78 chr6 117710335 117710489 -31806548 + B4A SINE B4 2 147 -145 2 1483 243 337 35 11 chr6 117710507 117710594 -31806443 + RSINE1 SINE B4 75 163 -2 2 1483 197 131 16 47 chr6 117710670 117710734 -31806303 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1483 430 262 0 12 chr6 117711019 117711104 -31805933 + B4 SINE B4 137 220 -72 2 1483 24 53 0 0 chr6 117711439 117711477 -31805560 + AT_rich Low_complexity Low_complexity 1 38 0 2 1483 412 160 33 71 chr6 117711505 117711687 -31805350 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 2 1483 287 310 45 78 chr6 117711751 117711905 -31805132 - B1F SINE Alu 0 149 1 2 1483 686 274 123 111 chr6 117711930 117712229 -31804808 - MTEb LTR MaLR 0 379 77 2 1483 2971 190 78 16 chr6 117712229 117712834 -31804203 - RLTR26 LTR ERVK 0 642 1 2 1483 320 206 103 0 chr6 117712834 117712897 -31804140 - MTEb LTR MaLR -305 74 5 2 1483 3423 237 104 65 chr6 117713629 117714369 -31802668 + Lx9 LINE L1 6526 7336 -308 2 1483 296 115 38 19 chr6 117714369 117714422 -31802615 - RLTR26 LTR ERVK -316 326 273 2 1483 3423 237 104 65 chr6 117714422 117714511 -31802526 + Lx9 LINE L1 7337 7435 -209 2 1483 381 22 0 0 chr6 117714511 117714557 -31802480 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1483 3423 237 104 65 chr6 117714557 117714743 -31802294 + Lx9 LINE L1 7436 7636 -8 2 1483 373 267 81 0 chr6 117714774 117714860 -31802177 + B1F SINE Alu 1 93 -56 2 1483 300 374 150 28 chr6 117716323 117716609 -31800428 - LTR16A LTR ERVL -123 328 8 2 1483 3751 47 0 13 chr6 117716848 117717304 -31799733 + L1_Mus2 LINE L1 6116 6565 -1 2 1483 183 232 0 0 chr6 117717358 117717414 -31799623 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 2 1483 348 161 0 0 chr6 117718371 117718433 -31798604 + (ATG)n Simple_repeat Simple_repeat 2 63 0 2 1483 680 258 58 58 chr6 117718846 117719070 -31797967 + B4A SINE B4 1 224 -68 2 1483 442 250 28 92 chr6 117719070 117719211 -31797826 + RSINE1 SINE B4 3 134 -31 2 1483 300 102 0 0 chr6 117719236 117719285 -31797752 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1483 379 234 0 38 chr6 117719306 117719386 -31797651 + B4A SINE B4 213 289 -3 2 1483 1015 211 29 0 chr6 117719451 117719655 -31797382 + B3 SINE B2 2 211 -5 3 1483 244 185 37 0 chr6 117719676 117719730 -31797307 + (ATTG)n Simple_repeat Simple_repeat 2 57 0 3 1483 811 241 53 0 chr6 117720050 117720257 -31796780 + MER74A LTR ERVL 3 220 -338 3 1483 364 370 130 23 chr6 117720300 117720389 -31796648 - L1MC LINE L1 -1948 4198 4108 3 1483 3158 44 23 8 chr6 117720389 117720779 -31796258 - MTA_Mm LTR MaLR 0 396 1 3 1483 364 370 130 23 chr6 117720779 117720988 -31796049 - L1MC LINE L1 -2039 4107 3869 3 1483 1965 145 6 42 chr6 117720994 117721353 -31795684 + RLTR15 LTR ERVK 1 346 -13 3 1483 636 261 42 0 chr6 117721512 117721677 -31795360 - ORR1E LTR MaLR -185 174 3 3 1483 748 257 146 49 chr6 117721736 117722202 -31794835 - L1M4c LINE L1 -2474 4063 3553 3 1483 659 114 19 19 chr6 117722231 117722338 -31794699 - B1_Mur4 SINE Alu -1 149 43 3 1483 254 0 0 159 chr6 117722341 117722467 -31794570 + (CTCTG)n Simple_repeat Simple_repeat 5 110 0 3 1483 322 129 0 38 chr6 117722468 117722528 -31794509 - B1_Mus1 SINE Alu -90 60 3 3 1483 852 283 127 79 chr6 117722649 117723129 -31793908 - L1M4c LINE L1 -3081 3456 2938 3 1483 529 161 165 25 chr6 117723129 117723250 -31793787 + B1_Mur4 SINE Alu 1 138 -12 3 1483 852 283 127 79 chr6 117723250 117723571 -31793466 - L1M4c LINE L1 -3600 2937 2608 3 1483 5389 38 90 8 chr6 117723571 117724238 -31792799 + L1Md_F2 LINE L1 5861 6582 0 3 1483 852 283 127 79 chr6 117724238 117724320 -31792717 - L1M4c LINE L1 -3930 2607 2530 3 1483 265 299 113 16 chr6 117724448 117724696 -31792341 - L1M4c LINE L1 -4092 2541 2270 3 1483 874 172 196 28 chr6 117725211 117725390 -31791647 - B3 SINE B2 -6 210 2 3 1483 317 316 66 75 chr6 117725397 117725623 -31791414 - L1M4c LINE L1 -4214 2325 2102 3 1483 246 267 0 0 chr6 117725647 117725707 -31791330 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1483 588 326 107 7 chr6 117725781 117726071 -31790966 - 7SK RNA RNA -4 327 9 3 1483 839 174 6 12 chr6 117726286 117726449 -31790588 - Lx5 LINE L1 -1 7049 6888 3 1483 305 298 101 36 chr6 117726505 117726826 -31790211 - L1M4c LINE L1 -4771 1768 1450 3 1483 1195 172 156 32 chr6 117726832 117727114 -31789923 + MTD LTR MaLR 103 419 0 3 1483 301 225 14 0 chr6 117727129 117727200 -31789837 + Lx8 LINE L1 6871 6942 -531 3 1483 804 258 37 147 chr6 117727235 117727663 -31789374 + Lx8 LINE L1 7091 7471 -2 3 1483 348 267 39 123 chr6 117729289 117729443 -31787594 + MLT1J LTR MaLR 225 365 -147 3 1483 1436 286 43 106 chr6 117729984 117730358 -31786679 - RLTR18 LTR ERVK 0 616 263 3 1483 2352 163 20 22 chr6 117730358 117730766 -31786271 + MTB_Mm LTR MaLR 1 407 0 3 1483 1436 286 43 106 chr6 117730766 117731040 -31785997 - RLTR18 LTR ERVK -354 262 9 3 1483 250 289 135 38 chr6 117733739 117733872 -31783165 + ORR1E LTR MaLR 3 148 -211 3 1483 2814 55 3 30 chr6 117733971 117734342 -31782695 - L1_Mus2 LINE L1 0 6566 6206 3 1483 893 148 7 0 chr6 117734527 117734662 -31782375 - B1_Mus1 SINE Alu -7 141 6 3 1483 2307 108 68 29 chr6 117735075 117735426 -31781611 + ORR1B2 LTR MaLR 3 367 0 3 1483 1182 254 93 60 chr6 117736102 117736651 -31780386 + Lx9 LINE L1 532 1098 -6510 3 1483 360 206 107 10 chr6 117736660 117736763 -31780274 + Lx9 LINE L1 5898 6010 -1634 3 1483 513 239 35 0 chr6 117736771 117736884 -31780153 + Lx9 LINE L1 6365 6481 -1163 3 1483 218 241 172 69 chr6 117736884 117737000 -31780037 - B2_Mm1a SINE B2 -42 151 24 3 1483 1901 196 89 23 chr6 117737007 117737477 -31779560 + Lx9 LINE L1 6630 7130 -514 3 1483 531 0 0 0 chr6 117737487 117737546 -31779491 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1483 354 129 0 0 chr6 117737552 117737614 -31779423 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1483 562 221 85 16 chr6 117737699 117737828 -31779209 - ID_B1 SINE B4 -3 221 84 3 1483 243 188 21 0 chr6 117738598 117738646 -31778391 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1483 279 93 0 0 chr6 117739776 117739819 -31777218 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1483 431 69 0 0 chr6 117740044 117740102 -31776935 + B2_Mm2 SINE B2 1 58 -137 3 1483 23 78 0 0 chr6 117740239 117740290 -31776747 + AT_rich Low_complexity Low_complexity 1 51 0 3 1483 344 233 114 19 chr6 117740290 117740395 -31776642 + PB1D10 SINE Alu 2 116 -1 3 1483 288 310 0 0 chr6 117741346 117741433 -31775604 + L1M2 LINE L1 5020 5106 -1037 3 1483 415 259 122 39 chr6 117741656 117741861 -31775176 + L1M5 LINE L1 5263 5484 -700 3 1483 583 199 44 27 chr6 117742583 117742786 -31774251 + Lx9 LINE L1 5692 5917 -1727 3 1483 1179 21 39 11 chr6 117742918 117744424 -31772613 + (TAGTG)n Simple_repeat Simple_repeat 1 1547 0 3 1483 1171 17 34 11 chr6 117744454 117744630 -31772407 + (TAGTG)n Simple_repeat Simple_repeat 1 180 0 3 1483 314 0 0 0 chr6 117744712 117744748 -31772289 - RLTRETN_Mm LTR ERVK 0 322 287 3 1483 39 38 0 0 chr6 117744780 117744833 -31772204 + AT_rich Low_complexity Low_complexity 1 53 0 3 1483 535 221 112 184 chr6 117744833 117744872 -31772165 + B3 SINE B2 1 35 -181 3 1483 1499 53 21 0 chr6 117744872 117745061 -31771976 + B2_Mm1t SINE B2 1 193 0 3 1483 535 221 112 184 chr6 117745061 117745254 -31771783 + B3 SINE B2 36 216 0 3 1483 1035 273 24 21 chr6 117745287 117745624 -31771413 + Lx8 LINE L1 6393 6730 -743 3 1483 1082 169 203 0 chr6 117745626 117745892 -31771145 - ORR1D1 LTR MaLR -1 373 54 3 1483 1877 158 91 15 chr6 117745892 117746142 -31770895 - ORR1B2 LTR MaLR 0 367 104 3 1483 3178 12 0 0 chr6 117746142 117746488 -31770549 + ORR1A0 LTR MaLR 1 346 0 3 1483 14108 55 8 7 chr6 117746488 117748277 -31768760 + ORR1A0-int LTR MaLR 1 1792 0 3 1483 3173 14 0 0 chr6 117748277 117748623 -31768414 + ORR1A0 LTR MaLR 1 346 0 3 1483 1877 166 69 44 chr6 117748623 117748769 -31768268 - ORR1B2 LTR MaLR -258 120 3 3 1483 552 268 70 23 chr6 117748770 117748942 -31768095 + Lx8 LINE L1 6729 6908 -565 3 1483 356 267 0 47 chr6 117748959 117749065 -31767972 + Lx8 LINE L1 6967 7067 -406 3 1483 1543 213 71 88 chr6 117750103 117750525 -31766512 - MTD LTR MaLR 0 419 5 3 1483 189 295 95 35 chr6 117753966 117754082 -31762955 + L2 LINE L2 1444 1566 -1853 3 1483 1641 214 69 18 chr6 117754426 117754934 -31762103 + Lx9 LINE L1 5444 6019 -1625 3 1483 266 295 74 61 chr6 117755082 117755230 -31761807 + Lx9 LINE L1 6306 6455 -1189 3 1483 604 297 116 7 chr6 117755231 117755516 -31761521 + Lx9 LINE L1 7292 7607 -37 3 1483 259 196 0 34 chr6 117755523 117755671 -31761366 + GA-rich Low_complexity Low_complexity 1 143 0 3 1483 222 169 0 33 chr6 117755719 117755811 -31761226 + GA-rich Low_complexity Low_complexity 1 89 0 3 1483 296 191 0 39 chr6 117755855 117756035 -31761002 + GA-rich Low_complexity Low_complexity 1 173 0 3 1483 354 189 0 33 chr6 117756083 117756264 -31760773 + GA-rich Low_complexity Low_complexity 1 175 0 3 1483 185 212 8 25 chr6 117756279 117756400 -31760637 + GA-rich Low_complexity Low_complexity 1 119 0 3 1483 25 0 0 0 chr6 117756453 117756478 -31760559 + AT_rich Low_complexity Low_complexity 1 25 0 3 1483 1862 301 61 34 chr6 117756507 117757314 -31759723 + Lx8 LINE L1 6644 7472 -1 3 1483 264 236 18 0 chr6 117757441 117757496 -31759541 - MLT1A1 LTR MaLR -14 394 339 3 1483 3708 153 80 29 chr6 117757613 117758313 -31758724 + MTC-int LTR MaLR 495 1230 -28 3 1483 1122 102 78 0 chr6 117758509 117758676 -31758361 - B2_Mm2 SINE B2 -14 181 2 3 1483 1096 149 6 0 chr6 117759681 117759849 -31757188 + MTC LTR MaLR 1 169 -252 3 1483 245 259 19 0 chr6 117760109 117760163 -31756874 + MTC LTR MaLR 155 209 -212 3 1483 831 131 79 14 chr6 117760163 117760302 -31756735 + B1_Mus1 SINE Alu 1 148 0 3 1483 205 176 0 0 chr6 117760302 117760336 -31756701 + GA-rich Low_complexity Low_complexity 2 35 0 3 1483 927 136 222 5 chr6 117760338 117760523 -31756514 + MTC LTR MaLR 196 420 -1 3 1483 454 207 52 104 chr6 117761164 117761299 -31755738 + MT2B LTR ERVL 151 278 -323 3 1483 1070 49 0 34 chr6 117761179 117761326 -31755711 + B1_Mus2 SINE Alu 6 147 0 3 1483 651 37 0 0 chr6 117761788 117761870 -31755167 + (GGGA)n Simple_repeat Simple_repeat 1 82 0 3 1483 1148 61 0 52 chr6 117762563 117762718 -31754319 + B1_Mus1 SINE Alu 1 147 -1 3 1483 747 282 15 20 chr6 117762751 117762950 -31754087 + B3A SINE B2 1 198 0 3 1483 324 256 0 34 chr6 117762979 117763068 -31753969 + L1Md_F2 LINE L1 158 243 -6373 3 1483 7693 47 3 6 chr6 117763042 117764654 -31752383 + L1Md_F2 LINE L1 4953 6561 -21 3 1483 561 55 0 0 chr6 117764654 117764727 -31752310 + (TA)n Simple_repeat Simple_repeat 1 73 0 3 1483 365 122 24 0 chr6 117764822 117764887 -31752150 + ORR1D1 LTR MaLR 259 374 0 3 1483 949 219 39 15 chr6 117765423 117765627 -31751410 + B3 SINE B2 2 210 -6 3 1483 333 0 0 0 chr6 117765747 117765784 -31751253 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1483 307 262 93 37 chr6 117765891 117765998 -31751039 - PB1D10 SINE Alu 0 117 5 3 1483 1270 102 11 0 chr6 117766032 117766208 -31750829 + B2_Mm1t SINE B2 2 179 -14 3 1483 305 104 396 9 chr6 117766273 117766379 -31750658 + B2_Mm2 SINE B2 47 193 -2 3 1483 198 0 0 0 chr6 117767134 117767156 -31749881 + (G)n Simple_repeat Simple_repeat 1 22 0 3 1483 409 281 88 0 chr6 117767752 117767866 -31749171 - RSINE1 SINE B4 -37 128 5 3 1483 381 284 0 0 chr6 117767896 117767977 -31749060 - ID4_ SINE ID -1 82 2 3 1483 398 241 0 0 chr6 117768298 117768385 -31748652 - Lx8 LINE L1 -360 7113 7027 3 1483 1075 231 60 39 chr6 117768538 117768739 -31748298 - Lx8 LINE L1 -432 7041 6832 3 1483 1287 109 11 0 chr6 117768739 117768914 -31748123 + B2_Mm1t SINE B2 1 177 -16 3 1483 864 97 0 0 chr6 117768914 117769038 -31747999 + (GAAA)n Simple_repeat Simple_repeat 3 126 0 3 1483 1075 231 60 39 chr6 117769038 117769119 -31747918 - Lx8 LINE L1 -642 6831 6753 3 1483 202 48 0 125 chr6 117769508 117769556 -31747481 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 1483 1228 54 0 0 chr6 117771463 117771610 -31745427 + B1_Mus2 SINE Alu 1 147 0 3 1483 3133 281 52 56 chr6 117771611 117772113 -31744924 + Lx9 LINE L1 6248 6740 -904 3 1483 1181 62 7 0 chr6 117772113 117772259 -31744778 + B1_Mus2 SINE Alu 1 147 0 3 1483 3133 288 55 54 chr6 117772259 117773114 -31743923 + Lx9 LINE L1 6596 7468 -5 3 1483 266 291 0 44 chr6 117773233 117773323 -31743714 - L2a LINE L2 -2 3424 3339 3 1483 208 364 61 23 chr6 117773703 117773835 -31743202 - L2 LINE L2 -680 2739 2603 3 1483 2063 135 45 25 chr6 117774008 117774410 -31742627 - RMER17C LTR ERVK 0 410 1 3 1483 499 319 63 0 chr6 117774946 117775137 -31741900 - MER58B DNA MER1_type 0 341 139 3 1483 660 258 125 101 chr6 117775161 117775329 -31741708 + B3A SINE B2 6 177 -18 3 1483 240 291 0 0 chr6 117775586 117775641 -31741396 - MER91B DNA Tip100 -46 144 90 3 1483 382 136 15 0 chr6 117775904 117775970 -31741067 + URR1B DNA MER1_type 153 219 -6 3 1483 742 176 16 34 chr6 117777295 117777494 -31739543 + ORR1B1 LTR MaLR 1 189 -185 3 1483 225 0 0 0 chr6 117779463 117779488 -31737549 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1483 1191 75 0 0 chr6 117779488 117779634 -31737403 - B1_Mus2 SINE Alu 0 147 2 3 1483 609 13 0 0 chr6 117779690 117779766 -31737271 + L1Md_T LINE L1 6507 6582 0 3 1483 1800 165 16 80 chr6 117779826 117779848 -31737189 - RMER17C LTR ERVK -2 408 391 3 1483 1303 95 21 21 chr6 117779848 117780041 -31736996 + B2_Mm2 SINE B2 1 193 -2 3 1483 1800 165 16 80 chr6 117780041 117780060 -31736977 - RMER17C LTR ERVK -20 390 377 3 1483 1280 34 0 0 chr6 117780060 117780207 -31736830 + B1_Mm SINE Alu 1 147 0 3 1483 896 35 17 0 chr6 117780214 117780329 -31736708 + (GGAAA)n Simple_repeat Simple_repeat 3 119 0 3 1483 1800 165 16 80 chr6 117780329 117780714 -31736323 - RMER17C LTR ERVK -34 376 1 3 1483 309 250 250 61 chr6 117780844 117781040 -31735997 - MLT1A0 LTR MaLR -51 323 91 3 1483 1653 204 67 32 chr6 117781043 117781417 -31735620 + MTD LTR MaLR 3 389 -30 3 1483 432 171 0 0 chr6 117781417 117781499 -31735538 + (TTGG)n Simple_repeat Simple_repeat 1 82 0 3 1483 826 181 21 7 chr6 117781500 117781645 -31735392 - B1_Mur3 SINE Alu -2 147 1 4 1483 227 175 0 0 chr6 117781645 117781685 -31735352 + ORR1D1 LTR MaLR 332 371 -3 4 1483 319 242 48 87 chr6 117781685 117781784 -31735253 - MLT1A0 LTR MaLR -270 95 1 3 1483 1519 69 0 0 chr6 117782451 117782639 -31734398 + B2_Mm1t SINE B2 1 188 -5 4 1483 224 114 29 0 chr6 117782901 117782936 -31734101 + B1_Mus1 SINE Alu 3 38 -110 4 1483 570 218 0 0 chr6 117783448 117783604 -31733433 + (TA)n Simple_repeat Simple_repeat 2 157 0 4 1483 669 87 397 21 chr6 117784751 117784892 -31732145 + B2_Mm2 SINE B2 2 195 0 4 1483 2694 96 5 3 chr6 117786279 117786404 -31730633 + MTB_Mm LTR MaLR 1 125 -282 4 1483 204 40 0 0 chr6 117786404 117786429 -31730608 + (G)n Simple_repeat Simple_repeat 1 25 0 4 1483 2694 96 5 3 chr6 117786429 117786680 -31730357 + MTB_Mm LTR MaLR 126 377 -30 4 1483 1192 61 0 20 chr6 117786931 117787081 -31729956 + B1_Mus2 SINE Alu 1 147 0 4 1483 948 178 0 0 chr6 117787100 117787280 -31729757 + GA-rich Low_complexity Low_complexity 1 180 0 4 1483 688 240 23 135 chr6 117787292 117787605 -31729432 - MTE2b LTR MaLR -54 325 48 4 1483 302 243 71 0 chr6 117788036 117788106 -31728931 + B3 SINE B2 129 203 -13 4 1483 721 138 0 0 chr6 117788262 117788371 -31728666 + B2_Mm2 SINE B2 1 109 -86 4 1483 1329 75 31 21 chr6 117788833 117789024 -31728013 - B2_Mm1t SINE B2 0 193 1 4 1483 204 67 0 0 chr6 117789211 117789241 -31727796 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 4 1483 1246 41 0 0 chr6 117789241 117789387 -31727650 - B1_Mm SINE Alu -1 146 1 4 1483 477 284 81 0 chr6 117789848 117789996 -31727041 + RSINE1 SINE B4 3 162 -3 4 1483 1237 54 0 0 chr6 117790392 117790540 -31726497 + B1_Mus1 SINE Alu 1 148 0 4 1483 189 0 0 0 chr6 117790540 117790561 -31726476 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1483 1367 42 0 23 chr6 117792932 117793104 -31723933 - B2_Mm2 SINE B2 -26 169 2 4 1483 183 42 0 0 chr6 117793214 117793238 -31723799 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1483 908 148 0 0 chr6 117793561 117793696 -31723341 + B1_Mus1 SINE Alu 1 135 -13 4 1483 195 316 53 0 chr6 117793926 117793983 -31723054 + MIRm SINE MIR 113 172 -104 4 1483 899 170 14 0 chr6 117794302 117794449 -31722588 - B1_Mur4 SINE Alu 0 150 2 4 1483 322 180 49 0 chr6 117794471 117794532 -31722505 + B3 SINE B2 13 76 -140 4 1483 378 341 0 0 chr6 117795233 117795458 -31721579 + MMSAT4 Satellite Satellite 1 225 0 4 1483 1449 45 62 0 chr6 117796642 117796820 -31720217 + B2_Mm2 SINE B2 1 189 -6 4 1483 2014 146 115 13 chr6 117797053 117797427 -31719610 - MTC LTR MaLR -8 413 2 4 1483 921 146 48 21 chr6 117797631 117797820 -31719217 - B2_Mm2 SINE B2 0 195 2 4 1483 955 128 76 27 chr6 117797882 117798067 -31718970 + B2_Mm2 SINE B2 2 195 0 4 1483 1111 64 43 0 chr6 117798123 117798264 -31718773 + B1_Mus2 SINE Alu 1 147 0 4 1483 362 314 177 59 chr6 117798281 117798535 -31718502 + MLT1G3 LTR MaLR 74 357 -238 4 1483 751 248 157 7 chr6 117798539 117798850 -31718187 - ORR1E LTR MaLR -2 377 8 4 1483 299 311 136 24 chr6 117798938 117799063 -31717974 - MLT1E3 LTR MaLR -137 487 349 4 1483 330 197 39 26 chr6 117799178 117799256 -31717781 - MLT1F2 LTR MaLR -413 147 69 4 1483 725 154 66 7 chr6 117799289 117799426 -31717611 - B1_Mur2 SINE Alu 0 149 5 4 1483 938 137 0 0 chr6 117799505 117799644 -31717393 - B1_Mus1 SINE Alu 0 148 10 4 1483 849 278 96 74 chr6 117799655 117800061 -31716976 - MLT1C LTR MaLR -2 503 89 4 1483 197 242 0 154 chr6 117800155 117800233 -31716804 + MER5A DNA MER1_type 3 68 -121 4 1483 212 0 0 35 chr6 117800589 117800618 -31716419 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1483 1027 59 0 15 chr6 117800618 117800744 -31716293 - B1_Mus1 SINE Alu -9 139 14 4 1483 227 274 35 43 chr6 117800649 117800790 -31716247 - ORR1E-int LTR MaLR -755 754 615 4 1483 798 264 135 23 chr6 117800999 117801510 -31715527 - L1_Mur3 LINE L1 -1511 4629 4020 4 1483 373 302 16 0 chr6 117801540 117801669 -31715368 - L1_Mur3 LINE L1 -582 5298 5168 4 1483 1424 70 0 31 chr6 117801704 117801897 -31715140 - B2_Mm2 SINE B2 -8 187 1 4 1483 862 148 31 37 chr6 117801905 117802067 -31714970 - B2_Mm2 SINE B2 -31 164 4 4 1483 1191 50 0 0 chr6 117802253 117802393 -31714644 - B1_Mus1 SINE Alu -8 140 1 4 1483 1347 77 11 16 chr6 117802400 117802586 -31714451 - B2_Mm1t SINE B2 -7 186 2 4 1483 858 289 107 26 chr6 117802595 117803128 -31713909 - L1M2 LINE L1 -1138 5005 4430 4 1483 321 89 0 0 chr6 117803128 117803173 -31713864 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 1483 420 71 0 0 chr6 117803179 117803235 -31713802 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1483 672 185 1 8 chr6 117803251 117803376 -31713661 - B3A SINE B2 -75 120 2 4 1483 930 146 79 0 chr6 117803494 117803659 -31713378 + B2_Mm1t SINE B2 2 179 -14 4 1483 315 111 426 10 chr6 117803715 117803816 -31713221 + B2_Mm2 SINE B2 47 189 -6 4 1483 1279 101 26 21 chr6 117803824 117804017 -31713020 + B2_Mm2 SINE B2 2 195 0 4 1483 318 50 0 0 chr6 117804330 117804370 -31712667 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1483 1173 49 0 7 chr6 117804371 117804516 -31712521 - B1_Mm SINE Alu -3 144 1 4 1483 981 155 39 165 chr6 117804522 117804777 -31712260 - URR1A DNA MER1_type -2 224 2 4 1483 188 135 0 26 chr6 117805281 117805319 -31711718 + GA-rich Low_complexity Low_complexity 1 37 0 4 1483 260 185 12 47 chr6 117805319 117805404 -31711633 - RMER17B LTR ERVK -478 480 399 4 1483 693 24 0 0 chr6 117805575 117805658 -31711379 - B2_Mm2 SINE B2 -48 147 65 4 1483 821 191 14 0 chr6 117805744 117805891 -31711146 + B1_Mur4 SINE Alu 2 150 0 4 1483 614 202 93 0 chr6 117805914 117806043 -31710994 + B1_Mur3 SINE Alu 1 141 -8 4 1483 1278 113 11 16 chr6 117806104 117806292 -31710745 + B2_Mm1t SINE B2 3 189 -4 4 1483 995 96 15 0 chr6 117807065 117807200 -31709837 + B1_Mus1 SINE Alu 2 138 -10 4 1483 365 194 41 4 chr6 117807208 117807310 -31709727 + B1_Mur4 SINE Alu 34 144 -5 4 1483 277 208 219 23 chr6 117807323 117807382 -31709655 + L1_Rod LINE L1 2512 2579 -3268 4 1483 597 28 0 0 chr6 117807382 117807453 -31709584 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 4 1483 277 208 219 23 chr6 117807453 117807521 -31709516 + L1_Rod LINE L1 2580 2663 -3184 4 1483 1287 34 0 0 chr6 117807563 117807709 -31709328 - B1_Mus2 SINE Alu -1 146 1 4 1483 615 215 46 8 chr6 117807709 117807839 -31709198 - B1_Mur2 SINE Alu -9 140 5 4 1483 522 0 0 0 chr6 117807848 117807906 -31709131 + (TGG)n Simple_repeat Simple_repeat 2 59 0 4 1483 374 318 121 0 chr6 117807906 117808038 -31708999 + MTC LTR MaLR 22 169 -252 4 1483 436 274 53 0 chr6 117808104 117808199 -31708838 + B3A SINE B2 4 103 -95 4 1483 577 287 66 118 chr6 117808229 117808517 -31708520 + RLTR18B LTR ERVK 1 273 -239 4 1483 186 143 0 0 chr6 117808690 117808725 -31708312 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1483 1162 68 0 0 chr6 117808725 117808872 -31708165 - B1_Mus1 SINE Alu 0 148 2 4 1483 752 329 5 9 chr6 117808877 117809101 -31707936 + RLTR18B LTR ERVK 290 512 0 4 1483 521 179 58 25 chr6 117809101 117809213 -31707824 + B1_Mus2 SINE Alu 30 145 -2 4 1483 1161 68 0 13 chr6 117809217 117809366 -31707671 + B1_Mus1 SINE Alu 1 147 -1 4 1483 609 218 8 24 chr6 117809404 117809531 -31707506 + B3 SINE B2 91 215 -1 4 1483 1322 251 171 58 chr6 117809547 117809735 -31707302 + Lx9 LINE L1 6729 6920 -724 4 1483 1241 104 44 0 chr6 117809735 117809918 -31707119 - B2_Mm2 SINE B2 -4 191 1 4 1483 1322 251 171 58 chr6 117809918 117810355 -31706682 + Lx9 LINE L1 6921 7425 -219 4 1483 447 52 0 0 chr6 117810382 117810440 -31706597 + (CATA)n Simple_repeat Simple_repeat 2 59 0 4 1483 355 233 125 88 chr6 117810440 117810600 -31706437 - RLTR13C2 LTR ERVK -1 807 642 4 1483 1203 35 14 0 chr6 117810632 117810777 -31706260 + B1_Mm SINE Alu 1 147 0 4 1483 231 36 0 0 chr6 117810872 117810900 -31706137 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1483 247 158 0 0 chr6 117810963 117811001 -31706036 - B2_Mm2 SINE B2 -157 38 1 4 1483 1184 75 0 0 chr6 117811319 117811466 -31705571 + B1_Mus2 SINE Alu 1 147 0 4 1483 1131 117 67 0 chr6 117811729 117811908 -31705129 + B2_Mm2 SINE B2 5 195 0 4 1483 234 235 132 0 chr6 117811912 117811980 -31705057 + RMER30 DNA MER1_type 5 81 -121 4 1483 440 280 23 8 chr6 117811985 117812118 -31704919 + RSINE1 SINE B4 25 159 -6 4 1483 346 294 26 128 chr6 117812523 117812679 -31704358 - B3A SINE B2 -2 196 57 4 1483 229 178 126 27 chr6 117812732 117812817 -31704220 - PB1D10 SINE Alu -57 92 7 4 1483 236 296 41 27 chr6 117814305 117814378 -31702659 - ORR1E LTR MaLR -209 150 77 4 1483 289 324 69 0 chr6 117814529 117814631 -31702406 + MLT2B3 LTR ERVL 1 109 -445 4 1483 1661 31 0 0 chr6 117814687 117814879 -31702158 + B2_Mm1a SINE B2 2 193 0 4 1483 363 185 0 120 chr6 117814880 117814894 -31702143 + MT2B LTR ERVL 155 157 -444 4 1483 681 135 17 25 chr6 117814894 117815037 -31702000 + B1_Mm SINE Alu 1 149 0 4 1483 2736 71 54 32 chr6 117815037 117815444 -31701593 + L1_Mm LINE L1 3306 3721 -2162 4 1483 518 32 0 0 chr6 117815447 117815509 -31701528 + B1_Mus2 SINE Alu 79 140 -7 4 1483 180 0 0 0 chr6 117815509 117815529 -31701508 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1483 385 272 97 74 chr6 117815543 117815718 -31701319 + ORR1E LTR MaLR 77 255 -104 4 1483 766 169 7 0 chr6 117816158 117816294 -31700743 + B1_Mus1 SINE Alu 2 138 -10 4 1483 405 86 0 0 chr6 117816295 117816353 -31700684 + (CAGA)n Simple_repeat Simple_repeat 2 59 0 5 1483 326 263 61 40 chr6 117816605 117816704 -31700333 + PB1D10 SINE Alu 3 103 -14 5 1483 368 274 0 0 chr6 117816792 117816876 -31700161 - PB1 SINE Alu -43 84 1 5 1483 501 268 154 7 chr6 117817168 117817311 -31699726 + RSINE1 SINE B4 2 165 0 5 1483 1151 74 0 20 chr6 117817374 117817525 -31699512 - B1_Mus1 SINE Alu 0 148 1 5 1483 193 246 2 21 chr6 117817567 117817614 -31699423 + MIR SINE MIR 104 156 -120 5 1483 203 281 71 35 chr6 117817679 117817764 -31699273 - MIRm SINE MIR -32 244 157 5 1483 1290 103 17 0 chr6 117817835 117818010 -31699027 + B2_Mm2 SINE B2 2 179 -16 5 1483 876 20 0 0 chr6 117818010 117818112 -31698925 + (GGAAA)n Simple_repeat Simple_repeat 5 106 0 5 1483 443 198 31 52 chr6 117818549 117818741 -31698296 + RMER17C LTR ERVK 88 275 -135 5 1483 180 321 57 0 chr6 117818853 117818906 -31698131 - L2b LINE L2 -12 3363 3308 5 1483 245 264 139 0 chr6 117819651 117819723 -31697314 + ID4_ SINE ID 2 83 0 5 1483 1197 86 23 146 chr6 117819733 117819774 -31697263 + B2_Mm2 SINE B2 2 42 -153 5 1483 1685 21 5 0 chr6 117819774 117819965 -31697072 + B2_Mm1t SINE B2 2 193 0 5 1483 1197 86 23 146 chr6 117819965 117820142 -31696895 + B2_Mm2 SINE B2 43 193 -2 5 1483 198 231 0 0 chr6 117820142 117820186 -31696851 + GA-rich Low_complexity Low_complexity 9 52 0 5 1483 734 224 87 15 chr6 117820327 117820522 -31696515 + B3 SINE B2 5 213 -3 5 1483 252 333 24 24 chr6 117821305 117821428 -31695609 + MMSAT4 Satellite Satellite 31 153 -15 5 1483 255 281 0 0 chr6 117821806 117821870 -31695167 + MMSAT4 Satellite Satellite 28 91 -77 5 1483 266 338 0 0 chr6 117821978 117822049 -31694988 + ID4 SINE ID 3 73 -10 5 1483 231 338 0 26 chr6 117821982 117822058 -31694979 + tRNA-Ala-GCY_ tRNA tRNA 1 74 -1 5 1483 519 272 136 84 chr6 117822161 117822374 -31694663 - B4 SINE B4 0 292 69 5 1483 1198 55 0 0 chr6 117823376 117823522 -31693515 + B1_Mm SINE Alu 1 146 -1 5 1483 234 0 23 68 chr6 117823522 117823566 -31693471 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 5 1483 548 57 0 0 chr6 117823567 117823637 -31693400 - B2_Mm1a SINE B2 -22 171 102 5 1483 234 0 0 0 chr6 117823637 117823663 -31693374 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1483 665 137 8 71 chr6 117823688 117823814 -31693223 - B2_Mm1a SINE B2 -75 118 1 5 1483 240 284 40 0 chr6 117823949 117824023 -31693014 - B1F1 SINE Alu 0 149 73 5 1483 287 248 0 25 chr6 117824122 117824202 -31692835 - B1F SINE Alu -54 95 20 5 1483 945 50 0 0 chr6 117824275 117824396 -31692641 + B1_Mus1 SINE Alu 28 148 0 5 1483 274 133 13 26 chr6 117824396 117824473 -31692564 + A-rich Low_complexity Low_complexity 2 77 0 5 1483 255 170 0 113 chr6 117824553 117824606 -31692431 + RSINE1 SINE B4 49 95 -70 5 1483 219 88 0 0 chr6 117825346 117825380 -31691657 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1483 991 91 0 0 chr6 117825380 117825512 -31691525 - B1_Mm SINE Alu 0 147 16 5 1483 452 246 54 88 chr6 117825385 117825532 -31691505 - B4 SINE B4 -71 221 80 5 1483 214 246 59 44 chr6 117825516 117825584 -31691453 + ID_B1 SINE B4 91 159 -65 5 1483 1136 128 12 0 chr6 117825621 117825785 -31691252 + B2_Mm1t SINE B2 2 167 -26 5 1483 322 141 228 53 chr6 117825804 117825967 -31691070 + B2_Mm2 SINE B2 1 194 -1 5 1483 348 267 33 55 chr6 117826055 117826146 -31690891 + RSINE1 SINE B4 3 91 -74 5 1483 834 155 35 0 chr6 117826183 117826325 -31690712 + B1_Mus2 SINE Alu 1 147 0 5 1483 1250 41 0 0 chr6 117826681 117826827 -31690210 + B1_Mus2 SINE Alu 2 147 0 5 1483 659 222 0 0 chr6 117826852 117826969 -31690068 + B3 SINE B2 2 118 -98 5 1483 746 177 8 23 chr6 117827223 117827356 -31689681 + B1_Mur2 SINE Alu 17 147 -2 5 1483 1063 77 21 0 chr6 117827495 117827638 -31689399 + B1_Mm SINE Alu 1 146 -1 5 1483 509 230 0 0 chr6 117827718 117827805 -31689232 - B1_Mus2 SINE Alu -1 146 60 5 1483 1153 43 0 0 chr6 117827820 117827959 -31689078 + B1_Mus2 SINE Alu 2 140 -7 5 1483 318 50 0 0 chr6 117827966 117828006 -31689031 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1483 1205 43 0 0 chr6 117828104 117828245 -31688792 - B1_Mus1 SINE Alu -6 142 2 5 1483 1607 27 0 21 chr6 117828256 117828445 -31688592 - B2_Mm1a SINE B2 -7 186 2 5 1483 941 104 60 0 chr6 117828477 117828611 -31688426 + B1_Mus1 SINE Alu 1 142 -6 5 1483 180 0 0 0 chr6 117828612 117828632 -31688405 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1483 706 147 140 0 chr6 117828773 117828923 -31688114 - RLTR24 LTR ERV1 0 529 359 5 1483 481 232 95 40 chr6 117828919 117829067 -31687970 + RMER5 LTR ERV1 339 494 -40 5 1483 239 203 0 33 chr6 117829816 117829877 -31687160 + ID4_ SINE ID 20 78 -5 5 1483 265 259 12 12 chr6 117830218 117830300 -31686737 + ID4 SINE ID 2 83 0 5 1483 21 0 0 0 chr6 117830300 117830321 -31686716 + AT_rich Low_complexity Low_complexity 1 21 0 5 1483 354 247 362 46 chr6 117830635 117830868 -31686169 + Tigger6a DNA MER2_type 24 330 -753 5 1483 304 289 140 0 chr6 117830881 117830995 -31686042 + MER67B LTR ERV1 2 131 -530 5 1483 621 309 11 43 chr6 117831126 117831312 -31685725 + B4A SINE B4 2 181 -111 5 1483 213 265 83 56 chr6 117831220 117831328 -31685709 + B1_Mm SINE Alu 12 122 -25 5 1483 287 264 116 121 chr6 117831336 117831526 -31685511 + MER68 LTR ERVL 12 200 -363 5 1483 358 268 30 40 chr6 117831516 117831617 -31685420 - MTE2a LTR MaLR -5 374 275 5 1483 230 218 69 103 chr6 117831656 117831742 -31685295 + MTE-int LTR MaLR 711 793 -787 5 1483 777 186 7 0 chr6 117831742 117831887 -31685150 + B1_Mus2 SINE Alu 2 147 0 5 1483 300 193 128 35 chr6 117831933 117832019 -31685018 + MTE2b LTR MaLR 240 333 -46 5 1483 390 304 73 55 chr6 117832080 117832299 -31684738 + MER68 LTR ERVL 238 460 -103 5 1483 266 324 9 38 chr6 117832410 117832516 -31684521 + MER68 LTR ERVL 391 493 -70 5 1483 624 254 37 0 chr6 117832562 117832696 -31684341 + B1_Mus1 SINE Alu 3 141 -7 5 1483 231 167 0 0 chr6 117832768 117832810 -31684227 + CT-rich Low_complexity Low_complexity 1 42 0 5 1483 809 168 36 21 chr6 117832831 117832971 -31684066 - B1_Mur3 SINE Alu -7 142 1 5 1483 315 358 21 0 chr6 117832977 117833072 -31683965 - PB1D10 SINE Alu -20 97 1 5 1483 186 111 15 60 chr6 117833091 117833158 -31683879 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 5 1483 1174 55 7 0 chr6 117833167 117833313 -31683724 - B1_Mus2 SINE Alu 0 147 1 5 1483 481 227 26 66 chr6 117833326 117833341 -31683696 + ID_B1 SINE B4 79 222 -1 5 1483 860 98 67 22 chr6 117833341 117833476 -31683561 + B1_Mur3 SINE Alu 9 149 0 5 1483 1056 67 22 0 chr6 117833530 117833665 -31683372 + B1_Mus1 SINE Alu 5 142 -6 5 185 591 307 0 7 chr6 117833689 117833840 -31683197 + RMER15-int LTR ERVL 4475 4624 -375 5 1484 1452 280 40 35 chr6 117833902 117834383 -31682654 + Lx8 LINE L1 6734 7216 -257 5 1484 1024 182 67 13 chr6 117834386 117834443 -31682594 + ORR1D1 LTR MaLR 123 178 -196 5 1484 207 88 0 0 chr6 117834443 117834477 -31682560 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 5 1484 1024 182 67 13 chr6 117834477 117834658 -31682379 + ORR1D1 LTR MaLR 179 373 -1 5 1484 2550 42 0 9 chr6 117834721 117835036 -31682001 - L1Md_F2 LINE L1 -11 6571 6260 5 1484 975 61 15 0 chr6 117835370 117835501 -31681536 - B1_Mm SINE Alu 0 147 15 5 1484 484 261 42 42 chr6 117835652 117835796 -31681241 - B1F1 SINE Alu -1 148 5 5 1484 320 304 63 32 chr6 117835878 117836068 -31680969 + L1MEc LINE L1 39 234 -6166 5 1484 335 319 16 65 chr6 117836208 117836332 -31680705 + ID_B1 SINE B4 86 203 -21 5 1484 213 356 51 65 chr6 117836332 117836346 -31680691 + B1F2 SINE Alu 5 140 -9 5 1484 913 153 0 0 chr6 117836373 117836510 -31680527 + B1_Mus2 SINE Alu 5 141 -6 5 1484 1174 63 0 0 chr6 117836515 117836657 -31680380 + B1_Mus1 SINE Alu 2 143 -5 5 1484 1861 43 9 0 chr6 117836761 117836994 -31680043 + ORR1A1 LTR MaLR 1 235 -111 5 1484 546 278 104 30 chr6 117837078 117837308 -31679729 + L1MEc LINE L1 635 881 -5519 5 1484 234 209 187 0 chr6 117837356 117837447 -31679590 + PB1D10 SINE Alu 5 112 -5 5 1484 436 309 117 5 chr6 117837485 117837690 -31679347 + B4A SINE B4 52 279 -13 5 1484 891 164 7 0 chr6 117837799 117837945 -31679092 - B1_Mur4 SINE Alu -2 148 2 5 1484 460 256 0 0 chr6 117837996 117838086 -31678951 - PB1D10 SINE Alu -12 105 16 5 1484 305 294 45 9 chr6 117839208 117839318 -31677719 + PB1D9 SINE Alu 2 115 -5 5 1484 232 252 228 31 chr6 117839338 117839358 -31677679 - B4A SINE B4 -140 152 1 5 1484 474 183 103 28 chr6 117839358 117839465 -31677572 - B3 SINE B2 -101 115 1 5 1484 290 230 0 86 chr6 117839587 117839668 -31677369 - RSINE1 SINE B4 -91 74 1 5 1484 1159 85 97 0 chr6 117839708 117839873 -31677164 + B2_Mm2 SINE B2 1 181 -14 5 1484 379 253 102 25 chr6 117839874 117840056 -31676981 - B3A SINE B2 -10 206 1 5 1484 490 296 20 7 chr6 117840060 117840206 -31676831 - B1F SINE Alu -1 148 1 5 1484 610 203 19 50 chr6 117840289 117840450 -31676587 + B3 SINE B2 50 205 -11 5 1484 605 240 0 33 chr6 117840502 117840653 -31676384 - B1_Mus2 SINE Alu 0 147 2 5 1484 295 57 57 0 chr6 117840690 117840743 -31676294 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 5 1484 1171 75 0 0 chr6 117840743 117840889 -31676148 - B1_Mus1 SINE Alu -1 147 2 5 1484 455 301 111 24 chr6 117840967 117841175 -31675862 + B4A SINE B4 5 230 -62 6 1484 467 294 20 65 chr6 117842055 117842208 -31674829 + ID_B1 SINE B4 78 223 -1 6 1484 180 0 0 0 chr6 117842367 117842387 -31674650 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1484 931 230 24 14 chr6 117842393 117842605 -31674432 - MTD LTR MaLR -201 218 5 6 1484 355 312 45 9 chr6 117842615 117842725 -31674312 - B1F SINE Alu -8 141 28 6 1484 255 274 7 88 chr6 117842751 117842787 -31674250 - BC1_Mm scRNA scRNA -23 129 97 6 1484 510 201 80 29 chr6 117842787 117842925 -31674112 - B1_Mur2 SINE Alu 0 149 5 6 1484 302 261 42 31 chr6 117842925 117843024 -31674013 - ID4 SINE ID -56 96 5 6 1484 1238 199 0 5 chr6 117843037 117843254 -31673783 + B3 SINE B2 1 216 0 6 1484 2236 143 95 8 chr6 117843352 117843732 -31673305 + MTC LTR MaLR 1 413 -8 6 1484 358 212 50 0 chr6 117843765 117843864 -31673173 + Lx5 LINE L1 5501 5611 -266 6 1484 258 283 105 9 chr6 117844320 117844434 -31672603 + Lx5 LINE L1 5637 5761 -1289 6 1484 709 230 145 25 chr6 117844476 117844717 -31672320 + B4A SINE B4 1 270 -22 6 1484 437 71 14 0 chr6 117844717 117844787 -31672250 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1484 354 228 70 102 chr6 117844851 117844940 -31672097 + MT2B LTR ERVL 82 256 -328 6 1484 469 159 159 0 chr6 117844940 117845028 -31672009 + B1_Mus1 SINE Alu 1 102 -46 6 1484 1128 88 0 20 chr6 117845028 117845178 -31671859 + B1_Mus2 SINE Alu 1 147 0 6 1484 1122 82 7 0 chr6 117845194 117845341 -31671696 + B1_Mus1 SINE Alu 1 148 0 6 1484 1375 81 43 0 chr6 117845344 117845530 -31671507 + B2_Mm2 SINE B2 2 195 0 6 1484 1294 103 16 0 chr6 117845534 117845718 -31671319 + B2_Mm2 SINE B2 3 189 -6 6 1484 252 354 76 8 chr6 117846090 117846221 -31670816 + RMER15 LTR ERVL 422 561 -14 6 1484 800 375 80 15 chr6 117846232 117846835 -31670202 + RMER15-int LTR ERVL 7 648 -4351 6 1484 607 213 0 0 chr6 117846860 117846968 -31670069 - B1_Mur2 SINE Alu -2 147 40 6 1484 233 301 43 120 chr6 117846863 117846980 -31670057 - B4 SINE B4 -71 221 114 6 1484 844 85 29 65 chr6 117847185 117847324 -31669713 - B1_Mus2 SINE Alu -12 135 2 6 1484 1158 65 0 25 chr6 117847360 117847518 -31669519 - B2_Mm1a SINE B2 0 193 40 6 1484 752 212 159 0 chr6 117847526 117847715 -31669322 - MTD LTR MaLR -5 414 196 6 1484 250 274 0 0 chr6 117847716 117847767 -31669270 + polypyrimidine Low_complexity Low_complexity 3 53 0 6 1484 376 392 33 51 chr6 117847767 117847783 -31669254 - MTD LTR MaLR -173 223 208 6 1484 1150 69 14 0 chr6 117847783 117847928 -31669109 - B1_Mm SINE Alu 0 147 1 6 1484 884 216 99 5 chr6 117847928 117848126 -31668911 - MTD LTR MaLR -210 209 13 6 1484 807 160 201 11 chr6 117848184 117848373 -31668664 - URR1A DNA MER1_type -1 225 1 6 1484 21 0 0 0 chr6 117848664 117848685 -31668352 + AT_rich Low_complexity Low_complexity 1 21 0 6 1484 252 0 0 0 chr6 117848866 117848894 -31668143 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1484 913 184 0 0 chr6 117848967 117849114 -31667923 - B1_Mus2 SINE Alu 0 147 1 6 1484 289 251 510 0 chr6 117849556 117849690 -31667347 - B3 SINE B2 -5 211 9 6 1484 372 221 0 112 chr6 117849809 117849916 -31667121 + MT2B LTR ERVL 158 252 -349 6 1484 748 169 62 0 chr6 117849829 117849959 -31667078 + B1_Mus1 SINE Alu 11 148 0 6 1484 1199 54 7 0 chr6 117849960 117850107 -31666930 + B1_Mus1 SINE Alu 1 148 0 6 1484 300 174 43 14 chr6 117850118 117850188 -31666849 + ID_B1 SINE B4 149 220 -4 6 1484 282 286 26 71 chr6 117850295 117850408 -31666629 + PB1D10 SINE Alu 10 117 0 6 1484 276 293 85 7 chr6 117850540 117850681 -31666356 - MLT2F LTR ERVL -2 661 510 6 1484 288 0 0 0 chr6 117851074 117851106 -31665931 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1484 902 241 62 39 chr6 117851110 117851369 -31665668 - B4A SINE B4 -23 269 5 6 1484 532 275 0 98 chr6 117851476 117851629 -31665408 - B1_Mur1 SINE Alu -11 138 1 6 1484 361 176 58 14 chr6 117851631 117851700 -31665337 - B1_Mur1 SINE Alu -1 148 77 6 1484 21 36 0 0 chr6 117851709 117851737 -31665300 + AT_rich Low_complexity Low_complexity 1 28 0 6 1484 1048 75 0 76 chr6 117851738 117851896 -31665141 + B1_Mm SINE Alu 2 147 0 6 1484 681 114 9 37 chr6 117851930 117852039 -31664998 + B1_Mur3 SINE Alu 43 148 -1 6 1484 359 234 85 0 chr6 117852129 117852223 -31664814 - MTE2a LTR MaLR -9 370 269 6 1484 255 292 17 117 chr6 117852241 117852361 -31664676 - MTE2a LTR MaLR -103 276 169 6 1484 416 259 86 142 chr6 117853034 117853243 -31663794 - B3A SINE B2 -13 203 30 6 1484 1132 58 0 0 chr6 117853261 117853398 -31663639 - B1_Mus2 SINE Alu -9 138 2 6 1484 30 0 0 0 chr6 117853399 117853429 -31663608 + AT_rich Low_complexity Low_complexity 1 30 0 6 1484 216 238 0 0 chr6 117853429 117853471 -31663566 - B3A SINE B2 -155 43 2 6 1484 189 0 0 0 chr6 117853471 117853492 -31663545 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1484 563 236 62 41 chr6 117853496 117853642 -31663395 - B1F SINE Alu 0 149 1 6 1484 501 288 88 49 chr6 117853663 117853889 -31663148 - MER44B DNA MER2_type -315 235 1 6 1484 280 348 70 61 chr6 117853907 117853960 -31663077 - MER74C LTR ERVL -108 450 401 6 1484 417 229 66 9 chr6 117853960 117854066 -31662971 + PB1D10 SINE Alu 1 112 -5 6 1484 486 294 121 40 chr6 117854066 117854354 -31662683 - MER74C LTR ERVL -158 400 12 6 1484 360 0 0 0 chr6 117854480 117854520 -31662517 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1484 362 318 117 67 chr6 117854524 117854763 -31662274 - B4 SINE B4 -29 263 13 6 1484 937 65 16 0 chr6 117854878 117855002 -31662035 - B1_Mus1 SINE Alu 0 148 23 6 1484 616 189 43 50 chr6 117855011 117855150 -31661887 - B1_Mur1 SINE Alu 0 149 12 6 1484 258 32 0 0 chr6 117855264 117855295 -31661742 + (TAA)n Simple_repeat Simple_repeat 2 32 0 6 1484 461 158 111 95 chr6 117855296 117855422 -31661615 + B1_Mus1 SINE Alu 8 135 -13 6 1484 400 155 142 28 chr6 117855696 117855802 -31661235 + RSINE1 SINE B4 8 125 -40 6 1484 240 265 0 14 chr6 117856551 117856620 -31660417 + C-rich Low_complexity Low_complexity 5 72 0 6 1484 234 287 176 10 chr6 117858514 117858616 -31658421 - RSINE1 SINE B4 -37 128 10 6 1484 287 262 135 32 chr6 117858796 117858922 -31658115 - ID_B1 SINE B4 -46 178 40 6 1484 339 248 39 122 chr6 117859048 117859204 -31657833 - B1_Mur1 SINE Alu -6 143 1 6 1484 1014 96 7 40 chr6 117859239 117859391 -31657646 - B1_Mm SINE Alu 0 147 1 6 1484 350 75 19 0 chr6 117859447 117859500 -31657537 - B1_Mus2 SINE Alu 0 147 94 6 1484 212 316 134 21 chr6 117859641 117859738 -31657299 - RSINE1 SINE B4 -34 131 24 6 1484 582 246 50 14 chr6 117859761 117859901 -31657136 - B1_Mus2 SINE Alu 0 147 3 6 1484 269 265 36 89 chr6 117859802 117859914 -31657123 - MT2B LTR ERVL -341 260 155 6 1484 731 197 0 0 chr6 117859919 117860046 -31656991 - B1_Mus1 SINE Alu -1 147 21 6 1484 252 0 0 0 chr6 117860311 117860339 -31656698 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1484 1156 43 14 0 chr6 117860348 117860488 -31656549 - B1_Mus1 SINE Alu -6 142 1 6 1484 931 80 0 14 chr6 117860632 117860772 -31656265 + (TTTTC)n Simple_repeat Simple_repeat 2 139 0 6 1484 244 307 22 11 chr6 117860773 117860862 -31656175 - PB1D9 SINE Alu -13 107 18 6 1484 524 219 13 122 chr6 117861011 117861167 -31655870 + B1_Mus2 SINE Alu 9 147 0 6 1484 371 209 180 84 chr6 117861592 117861770 -31655267 + B2_Mm2 SINE B2 1 195 0 6 1484 248 237 133 51 chr6 117862492 117862590 -31654447 + ID_B1 SINE B4 115 220 -4 6 1484 1157 62 0 14 chr6 117862675 117862822 -31654215 - B1_Mus2 SINE Alu -1 146 2 6 1484 271 203 0 158 chr6 117863276 117863352 -31653685 + ID4 SINE ID 17 80 -3 6 1484 251 271 7 176 chr6 117863352 117863424 -31653613 + B4A SINE B4 17 139 -153 6 1484 281 258 59 49 chr6 117863377 117863479 -31653558 + PB1D10 SINE Alu 10 112 -5 6 1484 223 284 94 109 chr6 117863619 117863757 -31653280 - ID_B1 SINE B4 -19 205 70 6 1484 276 233 133 27 chr6 117863855 117863930 -31653107 - B1F SINE Alu -29 120 38 6 1484 258 279 172 11 chr6 117864648 117864735 -31652302 - RSINE1 SINE B4 -47 118 18 6 1484 1598 52 0 0 chr6 117865093 117865285 -31651752 - B2_Mm1a SINE B2 -1 192 1 6 1484 318 147 14 68 chr6 117866436 117866509 -31650528 - B1_Mur3 SINE Alu -77 72 4 6 1484 258 306 0 0 chr6 117866460 117866522 -31650515 - B4 SINE B4 -155 137 76 6 1484 21 0 0 0 chr6 117868039 117868060 -31648977 + AT_rich Low_complexity Low_complexity 1 21 0 6 1484 230 267 39 26 chr6 117870042 117870119 -31646918 + PB1D10 SINE Alu 13 90 -27 6 1484 429 70 0 0 chr6 117870146 117870203 -31646834 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1484 270 284 31 21 chr6 117870246 117870343 -31646694 + Tigger5 DNA MER2_type 2245 2342 -64 6 1484 921 81 109 7 chr6 117870774 117870911 -31646126 - B2_Mm2 SINE B2 -44 151 1 6 1484 258 56 0 0 chr6 117871231 117871267 -31645770 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1484 355 289 99 50 chr6 117871423 117871605 -31645432 + MER20 DNA MER1_type 28 218 -1 6 1484 405 258 191 53 chr6 117872661 117872792 -31644245 - PB1D9 SINE Alu 0 149 1 6 1484 1668 31 5 0 chr6 117873145 117873337 -31643700 - B2_Mm1a SINE B2 0 193 1 6 1484 289 241 0 0 chr6 117873523 117873577 -31643460 - B1_Mur4 SINE Alu -47 103 50 6 1484 294 281 96 10 chr6 117875739 117875843 -31641194 + B1_Mur1 SINE Alu 1 113 -36 6 1484 351 296 0 54 chr6 117875968 117876061 -31640976 - B3 SINE B2 -27 189 102 6 1484 813 55 219 0 chr6 117876064 117876192 -31640845 - B2_Mm2 SINE B2 -34 161 6 6 1484 900 173 52 46 chr6 117876564 117876615 -31640422 - B2_Mm2 SINE B2 0 195 151 7 1484 1368 86 21 0 chr6 117876615 117876801 -31640236 - B2_Mm2 SINE B2 -4 191 2 7 1484 900 173 52 46 chr6 117876801 117876943 -31640094 - B2_Mm2 SINE B2 -45 150 1 7 1484 989 79 14 7 chr6 117877388 117877528 -31639509 - B1_Mus2 SINE Alu 0 147 7 7 1484 271 200 160 0 chr6 117877657 117877732 -31639305 - B3A SINE B2 -98 100 14 6 1484 338 133 338 34 chr6 117878388 117878512 -31638525 - B1_Mus1 SINE Alu 0 150 11 7 1484 242 267 137 65 chr6 117878815 117878842 -31638195 - B1_Mus1 SINE Alu -15 133 1 7 1484 367 268 175 0 chr6 117878842 117878939 -31638098 - ID_B1 SINE B4 -29 195 82 7 1484 344 274 0 39 chr6 117879088 117879207 -31637830 - RSINE1 SINE B4 -184 108 1 7 1484 471 221 117 8 chr6 117879262 117879390 -31637647 - B1_Mus2 SINE Alu -4 143 2 7 1484 234 214 128 104 chr6 117879282 117879407 -31637630 - MT2B LTR ERVL -323 278 151 7 1484 297 287 57 38 chr6 117879479 117879584 -31637453 - PB1D10 SINE Alu 0 117 11 7 1484 1443 55 6 6 chr6 117879639 117879822 -31637215 - B2_Mm2 SINE B2 -10 185 3 7 1484 268 200 55 0 chr6 117879851 117879906 -31637131 + PB1D7 SINE Alu 63 120 0 7 1484 1296 123 25 36 chr6 117879938 117880203 -31636834 - ORR1A2 LTR MaLR -12 315 1 7 1484 635 191 113 7 chr6 117880438 117880580 -31636457 - RMER15 LTR ERVL -35 540 384 7 1484 485 292 139 92 chr6 117880640 117880762 -31636275 - B4A SINE B4 -43 249 128 7 1484 1730 21 0 0 chr6 117880762 117880955 -31636082 - B2_Mm1t SINE B2 0 193 1 7 1484 485 292 139 92 chr6 117880955 117881070 -31635967 - B4A SINE B4 -165 127 1 7 1484 482 296 59 7 chr6 117881068 117881204 -31635833 - B1F2 SINE Alu 0 149 7 7 1484 280 347 52 71 chr6 117881074 117881229 -31635808 - ID_B1 SINE B4 -6 218 67 7 1484 236 302 0 0 chr6 117881296 117881349 -31635688 + ID4_ SINE ID 28 80 -3 7 1484 359 346 19 0 chr6 117881305 117881412 -31635625 + ID_B1 SINE B4 38 146 -78 7 1484 384 195 7 203 chr6 117881493 117881641 -31635396 + MT2B LTR ERVL 139 257 -344 7 1484 936 8 74 16 chr6 117881557 117881679 -31635358 + B1_Mm SINE Alu 19 147 0 7 1484 594 186 257 33 chr6 117881745 117881928 -31635109 - URR1B DNA MER1_type -1 224 1 7 1484 214 258 197 0 chr6 117882409 117882475 -31634562 + ID4 SINE ID 3 81 -2 7 1484 247 227 147 29 chr6 117882420 117882488 -31634549 + ID_B1 SINE B4 22 97 -127 7 1484 216 268 59 35 chr6 117882493 117882578 -31634459 + PB1 SINE Alu 41 127 0 7 1484 345 257 219 0 chr6 117884007 117884112 -31632925 - ID_B1 SINE B4 -8 216 89 7 1484 234 300 21 71 chr6 117884647 117884787 -31632250 - L2a LINE L2 -94 3332 3200 7 1484 222 150 0 0 chr6 117884826 117884866 -31632171 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1484 1294 34 0 0 chr6 117885482 117885630 -31631407 + B1_Mus1 SINE Alu 1 148 0 7 1484 186 71 0 0 chr6 117885632 117885660 -31631377 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1484 271 277 99 0 chr6 117886699 117886800 -31630237 + MIR SINE MIR 19 129 -133 7 1484 369 313 52 0 chr6 117887647 117887762 -31629275 + RSINE1 SINE B4 1 121 -44 7 1484 180 0 0 0 chr6 117887762 117887782 -31629255 + (TC)n Simple_repeat Simple_repeat 1 20 0 7 1484 438 20 0 0 chr6 117887782 117887832 -31629205 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1484 259 306 27 40 chr6 117888306 117888381 -31628656 - ID_B1 SINE B4 -67 157 84 7 1484 327 196 36 0 chr6 117888326 117888382 -31628655 - PB1D9 SINE Alu -61 59 2 7 1484 705 255 0 69 chr6 117888383 117888508 -31628529 - MTD LTR MaLR -208 211 94 7 1484 1191 82 0 0 chr6 117888508 117888654 -31628383 - B1_Mus1 SINE Alu -2 146 1 7 1484 705 255 0 69 chr6 117888654 117888688 -31628349 - MTD LTR MaLR -326 93 63 7 1484 394 207 12 12 chr6 117888698 117888781 -31628256 - MTD LTR MaLR -338 83 1 7 1484 930 291 35 43 chr6 117888781 117889180 -31627857 - L1_Rod LINE L1 -34 5813 5418 7 1484 763 219 60 12 chr6 117889184 117889350 -31627687 - B3 SINE B2 -6 210 37 7 1484 349 171 26 0 chr6 117889358 117889434 -31627603 - L1_Mur3 LINE L1 -451 5429 5352 7 1484 203 156 44 0 chr6 117889434 117889479 -31627558 + CT-rich Low_complexity Low_complexity 4 50 0 7 1484 646 206 80 14 chr6 117889480 117889618 -31627419 - B1_Mur2 SINE Alu 0 149 3 7 1484 677 297 29 20 chr6 117889618 117889965 -31627072 - L1M2 LINE L1 -746 5397 5048 7 1484 1567 179 137 14 chr6 117890283 117890640 -31626397 - MTD LTR MaLR -1 418 18 7 1484 304 309 38 103 chr6 117890609 117890680 -31626357 + MT2B LTR ERVL 93 151 -450 7 1484 700 184 79 29 chr6 117890680 117890820 -31626217 + B1_Mus1 SINE Alu 1 147 -1 7 1484 342 250 193 90 chr6 117891286 117891315 -31625722 - RSINE1 SINE B4 0 165 136 7 1484 288 0 0 0 chr6 117891315 117891347 -31625690 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1484 279 0 0 0 chr6 117891347 117891377 -31625660 + (GA)n Simple_repeat Simple_repeat 1 31 0 7 1484 342 250 193 90 chr6 117891377 117891469 -31625568 - RSINE1 SINE B4 -30 135 29 7 1484 1129 210 202 22 chr6 117891469 117891781 -31625256 - ORR1D2 LTR MaLR -2 368 1 7 1484 342 250 193 90 chr6 117891781 117891802 -31625235 - RSINE1 SINE B4 -137 28 8 7 1484 655 246 80 30 chr6 117891805 117892006 -31625031 - B3 SINE B2 -5 211 1 7 1484 459 161 161 0 chr6 117892024 117892117 -31624920 - B1_Mur4 SINE Alu -2 148 41 7 1484 249 250 97 0 chr6 117892702 117892774 -31624263 + B1F SINE Alu 42 120 -29 7 1484 239 289 44 0 chr6 117892710 117892800 -31624237 + ID_B1 SINE B4 131 224 0 7 1484 458 61 15 0 chr6 117893527 117893593 -31623444 + (CCTG)n Simple_repeat Simple_repeat 1 67 0 7 1484 510 263 93 89 chr6 117893690 117893915 -31623122 - B4 SINE B4 0 292 67 7 1484 1082 128 0 11 chr6 117894284 117894466 -31622571 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 1484 441 237 25 34 chr6 117894482 117894600 -31622437 - RLTR23 LTR ERV1 0 430 314 7 1484 226 247 38 88 chr6 117894689 117894769 -31622268 + RLTR30 LTR ERV1 86 161 -218 7 1484 3062 20 0 25 chr6 117894774 117895129 -31621908 + ORR1A0 LTR MaLR 1 346 0 7 1484 14623 50 1 1 chr6 117895129 117896920 -31620117 + ORR1A0-int LTR MaLR 1 1792 0 7 1484 3067 20 0 23 chr6 117896920 117897274 -31619763 + ORR1A0 LTR MaLR 1 346 0 7 1484 644 200 33 8 chr6 117897493 117897614 -31619423 - B1_Mur1 SINE Alu -21 128 5 7 1484 216 0 0 0 chr6 117897717 117897741 -31619296 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1484 1237 34 7 0 chr6 117897741 117897880 -31619157 - B1_Mus1 SINE Alu -7 141 2 7 1484 885 259 29 19 chr6 117897884 117898089 -31618948 - B3 SINE B2 -4 212 6 7 1484 306 320 0 25 chr6 117898094 117898174 -31618863 - PB1D10 SINE Alu -38 79 2 7 1484 399 73 0 0 chr6 117898195 117898250 -31618787 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1484 305 279 28 19 chr6 117898250 117898356 -31618681 - B4A SINE B4 -61 231 125 7 1484 432 236 88 26 chr6 117899091 117899204 -31617833 - B4 SINE B4 -167 125 6 7 1484 286 244 11 99 chr6 117899240 117899331 -31617706 - ID_B1 SINE B4 0 224 142 7 1484 429 341 93 6 chr6 117899312 117899495 -31617542 - ID_B1 SINE B4 -24 200 2 7 1484 1234 55 0 0 chr6 117899503 117899649 -31617388 - B1_Mm SINE Alu 0 147 2 7 1484 735 172 0 0 chr6 117899659 117899775 -31617262 + B1_Mus1 SINE Alu 23 138 -10 7 1484 488 338 43 0 chr6 117899911 117900050 -31616987 - ID_B1 SINE B4 0 224 80 7 1484 22 0 0 0 chr6 117900091 117900113 -31616924 + AT_rich Low_complexity Low_complexity 1 22 0 7 1484 1218 234 35 160 chr6 117900238 117900776 -31616261 - RLTR12B LTR ERVK -31 497 27 7 1484 527 200 33 0 chr6 117900778 117900868 -31616169 - B1F1 SINE Alu -44 105 13 7 1484 254 218 0 35 chr6 117900877 117900915 -31616122 + polypyrimidine Low_complexity Low_complexity 22 58 0 7 1484 1558 43 43 0 chr6 117900915 117901102 -31615935 - B2_Mm2 SINE B2 0 195 1 7 1484 254 218 0 35 chr6 117901102 117901120 -31615917 + polypyrimidine Low_complexity Low_complexity 4 21 0 7 1484 957 250 9 5 chr6 117901127 117901340 -31615697 - B3 SINE B2 -2 214 1 7 1484 347 145 14 0 chr6 117901538 117901607 -31615430 + CT-rich Low_complexity Low_complexity 1 70 0 7 1484 632 172 41 0 chr6 117901624 117901746 -31615291 - B1_Mur2 SINE Alu -21 128 2 7 1484 1168 75 0 0 chr6 117902226 117902372 -31614665 + B1_Mus2 SINE Alu 2 147 0 7 1484 707 198 115 21 chr6 117902469 117902660 -31614377 - B3 SINE B2 -5 211 3 7 1484 186 284 75 0 chr6 117902778 117902845 -31614192 - MIRc SINE MIR -114 154 83 7 1484 621 40 0 0 chr6 117902930 117903006 -31614031 + (TG)n Simple_repeat Simple_repeat 2 77 0 7 1484 219 222 31 217 chr6 117903012 117903125 -31613912 - B2_Mm2 SINE B2 -64 131 41 7 1484 787 137 104 22 chr6 117903125 117903259 -31613778 - B1_Mur2 SINE Alu 0 149 5 7 1484 219 222 31 217 chr6 117903259 117903306 -31613731 - B2_Mm2 SINE B2 -155 40 1 7 1484 1179 88 0 0 chr6 117903329 117903476 -31613561 + B1_Mus1 SINE Alu 2 148 0 7 1484 254 314 49 49 chr6 117903476 117903650 -31613387 - B2_Mm2 SINE B2 -14 181 7 7 1484 479 255 91 84 chr6 117903501 117903655 -31613382 - RSINE1 SINE B4 -8 157 3 7 1484 4102 182 36 139 chr6 117903716 117905197 -31611840 - RMER1A Other Other 0 1030 1 7 1484 300 278 138 9 chr6 117905445 117905554 -31611483 + B1F1 SINE Alu 1 123 -26 7 1484 486 248 99 0 chr6 117905730 117905851 -31611186 + B1F SINE Alu 1 133 -16 7 1484 608 267 20 20 chr6 117906279 117906432 -31610605 + ID_B1 SINE B4 72 224 0 7 1484 207 152 0 0 chr6 117907582 117907628 -31609409 + G-rich Low_complexity Low_complexity 1 46 0 7 1484 291 85 0 0 chr6 117907932 117907979 -31609058 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1484 516 112 224 0 chr6 117908058 117908165 -31608872 - B1_Mus2 SINE Alu -16 131 1 7 1484 254 118 0 38 chr6 117908430 117908483 -31608554 + C-rich Low_complexity Low_complexity 2 52 0 7 1484 210 170 85 0 chr6 117908579 117908619 -31608418 - RSINE1 SINE B4 -41 124 81 8 1484 245 29 29 0 chr6 117908619 117908653 -31608384 + (TTAA)n Simple_repeat Simple_repeat 1 35 0 8 1484 649 238 0 65 chr6 117908653 117908792 -31608245 - RSINE1 SINE B4 -33 132 3 8 1484 1630 31 0 25 chr6 117908813 117909010 -31608027 - B2_Mm1a SINE B2 0 193 2 8 1484 820 103 127 0 chr6 117909187 117909313 -31607724 + B1_Mus2 SINE Alu 5 146 -1 8 1484 247 238 185 12 chr6 117909589 117909670 -31607367 - B1F SINE Alu -37 112 18 8 1484 186 71 0 0 chr6 117909687 117909715 -31607322 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 8 1484 461 252 18 9 chr6 117909715 117909822 -31607215 - ID_B1 SINE B4 -6 218 110 8 1484 351 0 0 0 chr6 117909866 117909905 -31607132 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1484 339 252 72 0 chr6 117909960 117910071 -31606966 - B4A SINE B4 -166 126 8 8 1484 1055 83 41 7 chr6 117910164 117910309 -31606728 - B1_Mur4 SINE Alu 0 150 1 8 1484 343 264 127 0 chr6 117910309 117910408 -31606629 - PB1 SINE Alu -12 115 3 8 1484 1294 28 0 0 chr6 117910961 117911105 -31605932 - B1_Mus1 SINE Alu 0 148 5 8 1484 1111 84 0 14 chr6 117911217 117911362 -31605675 + B1_Mus1 SINE Alu 5 147 -1 8 1484 1243 276 26 20 chr6 117911610 117911954 -31605083 - MTD LTR MaLR -73 346 1 8 1484 294 313 81 30 chr6 117912401 117912635 -31604402 - LTR73 LTR ERV1 -102 470 225 8 1484 658 228 36 42 chr6 117912764 117912929 -31604108 + RSINE1 SINE B4 1 164 -1 8 1484 211 283 109 93 chr6 117912766 117912949 -31604088 + B3A SINE B2 2 187 -11 8 1484 1198 170 9 36 chr6 117913006 117913226 -31603811 - B3 SINE B2 0 216 3 8 1484 231 58 36 55 chr6 117913230 117913285 -31603752 + (TTTTTG)n Simple_repeat Simple_repeat 1 54 0 8 1484 839 235 22 0 chr6 117913288 117913471 -31603566 + B3A SINE B2 4 190 -8 8 1484 339 187 274 53 chr6 117913606 117913719 -31603318 + B1_Mur1 SINE Alu 11 148 -1 8 1484 893 152 200 11 chr6 117913719 117913899 -31603138 + B3 SINE B2 3 216 0 8 1484 1280 105 39 0 chr6 117914424 117914605 -31602432 + B2_Mm2 SINE B2 2 189 -6 8 1484 418 348 9 0 chr6 117915858 117915973 -31601064 - ID_B1 SINE B4 -22 202 87 8 1484 461 246 0 58 chr6 117915980 117916101 -31600936 - PB1D9 SINE Alu -5 115 2 8 1484 23 54 0 0 chr6 117916113 117916150 -31600887 + AT_rich Low_complexity Low_complexity 1 37 0 8 1484 239 219 0 47 chr6 117916662 117916748 -31600289 + (TCTCTG)n Simple_repeat Simple_repeat 1 82 0 8 1484 590 214 33 33 chr6 117917193 117917314 -31599723 - B1F1 SINE Alu -3 146 26 8 1484 1127 178 28 47 chr6 117917598 117917810 -31599227 + B3 SINE B2 2 209 -7 8 1484 5245 113 18 7 chr6 117917912 117918677 -31598360 - Lx2 LINE L1 0 6997 6224 8 1484 2561 129 43 10 chr6 117918677 117919075 -31597962 - MTC LTR MaLR -10 411 1 8 1484 237 178 0 0 chr6 117919134 117919179 -31597858 + (CATA)n Simple_repeat Simple_repeat 2 46 0 8 1484 1446 79 16 0 chr6 117919335 117919524 -31597513 - B2_Mm2 SINE B2 -2 193 2 8 1484 1032 106 42 0 chr6 117919528 117919670 -31597367 - B1_Mus1 SINE Alu 0 148 1 8 1484 543 155 45 14 chr6 117919733 117919836 -31597201 - ORR1C2 LTR MaLR 0 384 265 8 1484 228 191 43 0 chr6 117919858 117919905 -31597132 + B2_Mm2 SINE B2 35 83 -112 8 1484 1191 251 70 123 chr6 117919905 117919951 -31597086 - RMER19B LTR ERVK 0 611 580 8 1484 627 14 0 0 chr6 117919951 117920023 -31597014 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 8 1484 1115 52 44 0 chr6 117920025 117920160 -31596877 - B1_Mus1 SINE Alu -6 142 2 8 1484 1595 212 73 71 chr6 117920160 117920911 -31596126 - RMER19B LTR ERVK -39 698 1 8 1484 617 264 41 76 chr6 117920911 117921050 -31595987 + B3 SINE B2 72 203 -13 8 1484 258 81 0 0 chr6 117921060 117921097 -31595940 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 8 1484 227 306 97 0 chr6 117921261 117921333 -31595704 + ID4_ SINE ID 4 82 -1 8 1484 380 276 30 73 chr6 117921818 117921982 -31595055 + CYRA11_Mm Unknown Y-chromosome 189 345 -272 8 1484 1301 138 5 5 chr6 117921835 117922032 -31595005 - URR1A DNA MER1_type -29 197 1 8 1484 518 236 50 7 chr6 117922425 117922566 -31594471 + B1F SINE Alu 1 147 -2 8 1484 594 223 30 23 chr6 117922576 117922709 -31594328 + B1_Mur2 SINE Alu 15 148 -1 8 1484 225 0 0 0 chr6 117922772 117922797 -31594240 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 8 1484 248 303 15 0 chr6 117922821 117922887 -31594150 - ID4_ SINE ID 0 83 17 8 1484 1770 94 25 0 chr6 117922883 117923127 -31593910 + ORR1B1 LTR MaLR 145 394 0 8 1484 783 261 138 45 chr6 117923339 117923609 -31593428 - L1MC1 LINE L1 -54 6279 5966 8 1484 1376 99 10 16 chr6 117923609 117923803 -31593234 - B2_Mm1t SINE B2 0 193 1 8 1484 783 261 138 45 chr6 117923803 117923930 -31593107 - L1MC1 LINE L1 -368 5965 5845 8 1484 696 136 10 0 chr6 117923930 117924033 -31593004 - B1_Mur1 SINE Alu 0 149 46 8 1484 410 219 355 7 chr6 117924621 117924773 -31592264 - B3 SINE B2 -11 205 1 8 1484 214 37 52 69 chr6 117925086 117925144 -31591893 + T-rich Low_complexity Low_complexity 3 59 0 8 1484 429 271 17 17 chr6 117925163 117925283 -31591754 - Lx9 LINE L1 -278 7366 7247 8 1484 946 225 33 28 chr6 117925352 117925567 -31591470 - B3 SINE B2 0 216 1 8 1484 493 240 115 0 chr6 117925567 117925671 -31591366 - RSINE1 SINE B4 -46 119 4 8 1484 219 237 16 48 chr6 117925720 117925782 -31591255 - L2b LINE L2 -5 3370 3311 8 1484 237 139 0 0 chr6 117926852 117926895 -31590142 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 8 1484 412 136 310 10 chr6 117926928 117927045 -31589992 - B1_Mus1 SINE Alu 0 148 1 8 1484 1552 26 16 21 chr6 117927066 117927260 -31589777 - B2_Mm2 SINE B2 -2 193 1 8 1484 291 312 0 25 chr6 117928667 117928746 -31588291 + PB1D10 SINE Alu 41 117 0 8 1484 486 0 0 0 chr6 117929138 117929192 -31587845 + (CAG)n Simple_repeat Simple_repeat 2 55 0 8 1484 1210 179 19 9 chr6 117930337 117930551 -31586486 - B3 SINE B2 0 216 1 8 1484 646 288 11 57 chr6 117930723 117930988 -31586049 - L1M2 LINE L1 -481 5810 5558 8 1484 566 170 98 0 chr6 117930988 117931100 -31585937 + MTE2a LTR MaLR 1 123 -256 8 1484 900 232 26 16 chr6 117931100 117931293 -31585744 - B3A SINE B2 -2 196 2 8 1484 288 0 0 0 chr6 117931317 117931349 -31585688 + (TC)n Simple_repeat Simple_repeat 2 33 0 8 1484 275 205 12 49 chr6 117931352 117931434 -31585603 - RSINE1 SINE B4 0 165 87 8 1484 592 301 141 21 chr6 117931465 117931706 -31585331 + MTE2a LTR MaLR 101 370 -9 8 1484 479 331 82 44 chr6 117931719 117931987 -31585050 - L1_Mur3 LINE L1 -367 5513 5228 8 1484 458 61 15 0 chr6 117931987 117932053 -31584984 + (TA)n Simple_repeat Simple_repeat 2 68 0 8 1484 479 331 82 44 chr6 117932053 117932236 -31584801 - L1_Mur3 LINE L1 -653 5227 5045 8 1484 1153 68 0 7 chr6 117932303 117932451 -31584586 - B1_Mus2 SINE Alu 0 147 1 8 1484 456 49 0 0 chr6 117932499 117932560 -31584477 - L1Md_F3 LINE L1 -15 6569 6509 8 1484 1143 68 0 63 chr6 117932822 117932980 -31584057 - B1_Mus1 SINE Alu 0 148 1 8 1484 712 221 15 0 chr6 117932980 117933115 -31583922 - B1_Mur2 SINE Alu -11 138 1 8 1484 234 62 0 0 chr6 117933288 117933320 -31583717 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1484 1224 282 134 44 chr6 117933345 117933890 -31583147 - Lx9 LINE L1 -206 7438 6845 8 1484 292 200 26 26 chr6 117933897 117934010 -31583027 + L1_Rod LINE L1 5262 5374 -473 8 1484 1224 279 78 12 chr6 117934013 117934413 -31582624 - Lx9 LINE L1 -814 6830 6405 8 1484 662 200 17 56 chr6 117934406 117934586 -31582451 + L1_Rod LINE L1 5022 5194 -653 8 1484 695 156 7 0 chr6 117934590 117934731 -31582306 + GA-rich Low_complexity Low_complexity 3 144 0 8 1484 1970 238 42 48 chr6 117934756 117935356 -31581681 + L1_Rod LINE L1 5252 5847 0 8 1484 510 46 0 0 chr6 117935545 117935610 -31581427 + (GA)n Simple_repeat Simple_repeat 1 65 0 8 1484 1062 212 19 0 chr6 117935659 117935871 -31581166 - B3 SINE B2 0 216 1 8 1484 395 265 9 38 chr6 117936048 117936154 -31580883 - B1_Mur1 SINE Alu 0 149 47 8 1484 1261 54 0 0 chr6 117936284 117936431 -31580606 + B1_Mus2 SINE Alu 1 147 0 8 1484 1687 26 0 0 chr6 117936474 117936663 -31580374 - B2_Mm1a SINE B2 -3 190 2 8 1484 1449 27 25 89 chr6 117936673 117936875 -31580162 - B2_Mm1t SINE B2 -3 190 2 8 1484 525 326 80 22 chr6 117937006 117937458 -31579579 - Lx8 LINE L1 -6 7467 6990 8 1484 21 0 0 0 chr6 117937676 117937697 -31579340 + AT_rich Low_complexity Low_complexity 1 21 0 8 1484 332 179 0 13 chr6 117937715 117937794 -31579243 + (TA)n Simple_repeat Simple_repeat 2 79 0 8 1484 255 296 41 0 chr6 117938191 117938272 -31578765 - ID4 SINE ID -66 86 3 8 1484 415 223 47 28 chr6 117938283 117938389 -31578648 - PB1D10 SINE Alu 0 117 10 8 1484 255 328 53 53 chr6 117938308 117938440 -31578597 - ID_B1 SINE B4 -48 176 45 8 1484 392 261 70 0 chr6 117938516 117938631 -31578406 - B1F SINE Alu -26 123 1 8 1484 253 305 113 15 chr6 117939560 117939693 -31577344 - B1_Mur3 SINE Alu 0 149 4 8 1484 740 215 50 132 chr6 117939693 117939804 -31577233 - ID_B1 SINE B4 -130 94 2 8 1484 227 180 0 20 chr6 117940212 117940263 -31576774 - L1M4 LINE L1 -594 5580 5531 8 1484 327 264 84 2 chr6 117940278 117940438 -31576599 - L1M4 LINE L1 -1036 5104 4933 8 1484 207 186 0 0 chr6 117942877 117942920 -31574117 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 8 1484 506 261 165 6 chr6 117943405 117943563 -31573474 - MTD LTR MaLR -18 401 219 8 1484 2688 253 58 81 chr6 117943557 117944511 -31572526 - MTD-int LTR MaLR -156 1102 86 8 1484 1416 68 21 5 chr6 117944511 117944702 -31572335 - B2_Mm2 SINE B2 -1 194 1 9 1484 1095 286 101 161 chr6 117944702 117944795 -31572242 - MTD-int LTR MaLR -1013 85 1 8 1484 414 232 197 70 chr6 117944796 117944954 -31572083 - MTD LTR MaLR 0 419 195 8 1484 1066 171 46 5 chr6 117944978 117945196 -31571841 - Lx4B LINE L1 -1 7057 6831 9 1484 181 297 81 0 chr6 117945509 117945583 -31571454 + L3 LINE CR1 2133 2212 -2277 9 1484 753 164 54 15 chr6 117948340 117948470 -31568567 + B1_Mur2 SINE Alu 3 137 -12 9 1484 186 150 0 0 chr6 117950305 117950345 -31566692 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1484 291 245 30 112 chr6 117950604 117950726 -31566311 - MLT1A1 LTR MaLR -259 115 1 9 1484 224 282 0 0 chr6 117950967 117951042 -31565995 - MIR SINE MIR -134 134 54 9 1484 493 282 0 0 chr6 117951633 117951743 -31565294 + PB1D10 SINE Alu 3 112 -5 9 1484 888 104 0 0 chr6 117951746 117951880 -31565157 + (GGA)n Simple_repeat Simple_repeat 3 136 0 9 1484 396 325 48 0 chr6 117952080 117952206 -31564831 + B1F SINE Alu 10 141 -8 9 1484 186 227 125 62 chr6 117952300 117952380 -31564657 - L3 LINE CR1 -4402 87 3 9 1484 302 317 77 0 chr6 117952877 117952981 -31564056 + L1MCa LINE L1 1450 1561 -4947 9 1484 429 271 130 19 chr6 117953259 117953466 -31563571 - L1MCa LINE L1 -5090 1418 1189 9 1484 369 319 42 0 chr6 117953626 117953770 -31563267 + Charlie7 DNA MER1_type 1511 1660 -952 9 1484 327 292 75 9 chr6 117953941 117954034 -31563003 + MTE-int LTR MaLR 1430 1529 -51 9 1484 976 235 26 141 chr6 117954034 117954381 -31562656 + ORR1E LTR MaLR 3 309 -50 9 1484 408 71 0 0 chr6 117954433 117954489 -31562548 + (TATG)n Simple_repeat Simple_repeat 4 59 0 9 1484 256 210 159 16 chr6 117954489 117954552 -31562485 - ID4_ SINE ID -10 73 2 9 1484 237 287 9 56 chr6 117955227 117955334 -31561703 - L1MA7 LINE L1 -265 6026 5925 9 1484 306 209 72 29 chr6 117957195 117957264 -31559773 - MLT1A1 LTR MaLR -21 387 316 9 1484 638 178 25 25 chr6 117957491 117957612 -31559425 + B3 SINE B2 96 216 0 9 1484 21 0 0 0 chr6 117957614 117957635 -31559402 + AT_rich Low_complexity Low_complexity 1 21 0 9 1484 24 53 0 0 chr6 117957690 117957728 -31559309 + AT_rich Low_complexity Low_complexity 1 38 0 9 1484 255 128 0 0 chr6 117957745 117957784 -31559253 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1484 564 91 0 0 chr6 117957784 117957872 -31559165 + (GA)n Simple_repeat Simple_repeat 1 88 0 9 1484 244 326 138 25 chr6 117957872 117958199 -31558838 - L1ME1 LINE L1 -96 6083 5720 9 1484 287 300 11 11 chr6 117958395 117958473 -31558564 + PB1D10 SINE Alu 1 78 -39 9 1484 313 340 19 19 chr6 117958473 117958581 -31558456 + PB1 SINE Alu 3 110 -17 9 1484 1023 271 114 23 chr6 117958588 117958657 -31558380 + Lx7 LINE L1 6863 6931 -765 9 1484 2781 65 0 0 chr6 117958657 117959020 -31558017 - L1_Mus1 LINE L1 0 6567 6219 9 1484 1023 271 114 23 chr6 117959020 117959342 -31557695 + Lx7 LINE L1 6932 7290 -406 9 1484 306 234 84 35 chr6 117959371 117959513 -31557524 + Lx7 LINE L1 7532 7680 -16 9 1484 1702 21 0 0 chr6 117959552 117959743 -31557294 - B2_Mm1a SINE B2 -1 192 2 9 1484 903 98 0 0 chr6 117960078 117960210 -31556827 + (TCC)n Simple_repeat Simple_repeat 2 133 0 9 1484 246 274 131 40 chr6 117960306 117960481 -31556556 + L2c LINE L2 2792 2982 -437 9 1484 205 330 86 68 chr6 117960718 117960835 -31556202 + L2c LINE L2 3268 3386 -1 9 1484 344 291 38 38 chr6 117961049 117961181 -31555856 + MIRb SINE MIR 56 187 -81 9 1484 43 88 0 0 chr6 117961446 117961559 -31555478 + GC_rich Low_complexity Low_complexity 1 113 0 9 1484 21 0 0 0 chr6 117961761 117961782 -31555255 + GC_rich Low_complexity Low_complexity 1 21 0 9 1484 432 0 0 0 chr6 117962127 117962175 -31554862 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1484 450 0 0 0 chr6 117962864 117962914 -31554123 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 1484 306 0 0 0 chr6 117962914 117962947 -31554090 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1484 227 56 56 0 chr6 117963110 117963146 -31553891 + (TCTG)n Simple_repeat Simple_repeat 4 41 0 9 1484 210 245 20 0 chr6 117963263 117963312 -31553725 + GA-rich Low_complexity Low_complexity 2 51 0 9 1485 549 105 0 0 chr6 117964813 117964899 -31552138 + (CA)n Simple_repeat Simple_repeat 2 87 0 9 1485 262 138 35 0 chr6 117967387 117967445 -31549592 + CT-rich Low_complexity Low_complexity 2 61 0 9 1485 480 48 0 0 chr6 117968428 117968491 -31548546 + (GA)n Simple_repeat Simple_repeat 2 64 0 9 1485 270 306 0 0 chr6 117968576 117968661 -31548376 + (TGG)n Simple_repeat Simple_repeat 3 87 0 9 1485 231 170 0 0 chr6 117968677 117968724 -31548313 + (ATGGTG)n Simple_repeat Simple_repeat 6 52 0 9 1485 245 339 17 0 chr6 117968731 117968846 -31548191 + (TGG)n Simple_repeat Simple_repeat 1 117 0 9 1485 234 376 22 2 chr6 117969203 117969306 -31547731 + MIR SINE MIR 49 151 -125 9 1485 732 12 0 0 chr6 117969328 117969413 -31547624 + (TG)n Simple_repeat Simple_repeat 1 85 0 9 1485 264 196 0 0 chr6 117970571 117970617 -31546420 + ID4_ SINE ID 38 83 0 9 1485 446 192 10 48 chr6 117970683 117970787 -31546250 - PB1D10 SINE Alu -1 116 17 9 1485 1069 90 21 0 chr6 117970808 117970952 -31546085 - B1_Mus1 SINE Alu -1 147 1 9 1485 416 196 165 58 chr6 117971428 117971531 -31545506 - PB1D10 SINE Alu -5 115 2 9 1485 546 259 59 7 chr6 117971720 117971856 -31545181 - MTEa LTR MaLR -235 144 2 9 1485 732 321 46 9 chr6 117971868 117972192 -31544845 - ERVL-int LTR ERVL -8 5749 5414 9 1485 416 92 298 99 chr6 117972209 117972330 -31544707 - B2_Mm2 SINE B2 -3 192 48 9 1485 1273 108 11 0 chr6 117972378 117972554 -31544483 - B2_Mm1t SINE B2 -14 179 2 9 1485 1012 223 23 45 chr6 117972623 117972844 -31544193 - B3 SINE B2 0 216 1 9 1485 1449 266 113 4 chr6 117973066 117973545 -31543492 - ERVL-int LTR ERVL -786 4699 4169 9 1485 1108 244 27 8 chr6 117973546 117973806 -31543231 - MTEb LTR MaLR -12 367 103 9 1485 574 152 0 39 chr6 117973811 117973941 -31543096 - L1Md_F3 LINE L1 -3 6581 6457 9 1485 1213 270 82 78 chr6 117974045 117974580 -31542457 - Lx8 LINE L1 -2 7471 6935 9 1485 3445 175 47 17 chr6 117974680 117975448 -31541589 - RMER1B Other Other 0 1066 93 9 1485 1342 209 143 3 chr6 117975484 117975805 -31541232 - ORR1D1 LTR MaLR -8 366 1 9 1485 957 284 54 11 chr6 117975806 117976155 -31540882 - Lx9 LINE L1 -158 7486 7123 9 1485 381 233 22 0 chr6 117976188 117976278 -31540759 - Lx9 LINE L1 -596 7048 6957 9 1485 582 15 0 0 chr6 117976657 117976724 -31540313 + (TC)n Simple_repeat Simple_repeat 1 67 0 9 1485 671 152 0 0 chr6 117976725 117976830 -31540207 - PB1D9 SINE Alu -7 113 9 9 1485 326 306 0 0 chr6 117976839 117976924 -31540113 - MTEb LTR MaLR -294 85 1 9 1485 3616 270 60 22 chr6 117977001 117978111 -31538926 - ERVL-int LTR ERVL -2265 3492 2341 9 1485 821 179 179 0 chr6 117978168 117978341 -31538696 - B3 SINE B2 -4 212 9 9 1485 409 279 44 0 chr6 117978365 117978501 -31538536 - L1MC LINE L1 -1957 4189 4048 9 1485 588 174 51 4 chr6 117978492 117978620 -31538417 - L1_Mur3 LINE L1 -1999 3848 3709 9 1485 217 75 0 48 chr6 117978647 117978689 -31538348 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1485 608 314 45 7 chr6 117978691 117978845 -31538192 - RSINE1 SINE B4 0 165 6 9 1485 862 294 68 32 chr6 117978851 117978943 -31538094 - L1_Mur3 LINE L1 -2141 3739 3655 9 1485 2301 211 240 2 chr6 117978943 117979538 -31537499 + RMER19A LTR ERVK 1 737 0 9 1485 862 294 68 32 chr6 117979538 117979941 -31537096 - L1_Mur3 LINE L1 -2226 3654 3226 9 1485 231 203 0 39 chr6 117979970 117980047 -31536990 + CT-rich Low_complexity Low_complexity 3 76 0 9 1485 381 151 0 0 chr6 117980051 117980104 -31536933 - B1_Mus2 SINE Alu -16 131 79 9 1485 385 195 75 38 chr6 117980106 117980186 -31536851 + B1F SINE Alu 64 146 -3 9 1485 873 296 77 8 chr6 117980214 117980578 -31536459 - ERVL-int LTR ERVL -4610 1147 759 9 1485 704 191 11 11 chr6 117980645 117980817 -31536220 + CT-rich Low_complexity Low_complexity 8 180 0 9 1485 987 135 0 0 chr6 117980817 117980950 -31536087 - B1_Mus1 SINE Alu -15 133 1 9 1485 431 336 0 22 chr6 117980960 117981094 -31535943 - B1F1 SINE Alu -6 143 13 9 1485 477 0 0 0 chr6 117981409 117981462 -31535575 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1485 1845 165 32 38 chr6 117981924 117982296 -31534741 - ORR1D1 LTR MaLR -2 372 3 9 1485 572 298 87 61 chr6 117983527 117983791 -31533246 + B4 SINE B4 1 271 -21 9 1485 318 290 0 0 chr6 117984200 117984262 -31532775 + RSINE1 SINE B4 104 165 0 9 1485 874 140 41 27 chr6 117984303 117984450 -31532587 + B1_Mur2 SINE Alu 1 149 0 9 1485 200 111 22 0 chr6 117987429 117987474 -31529563 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 1485 23 33 0 0 chr6 117988389 117988419 -31528618 + AT_rich Low_complexity Low_complexity 1 30 0 9 1485 276 355 23 55 chr6 117988426 117988554 -31528483 + L2 LINE L2 611 734 -2685 9 1485 1087 202 66 87 chr6 117988630 117988794 -31528243 - Lx7 LINE L1 0 7696 7522 9 1485 387 56 0 0 chr6 117988794 117988848 -31528189 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 9 1485 1087 202 66 87 chr6 117988848 117989030 -31528007 - Lx7 LINE L1 -175 7521 7358 9 1485 423 0 0 0 chr6 117989129 117989176 -31527861 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1485 237 280 0 99 chr6 117989186 117989212 -31527825 - Lx7 LINE L1 -325 7371 7354 9 1485 2851 9 71 0 chr6 117989212 117989535 -31527502 - ORR1A0 LTR MaLR 0 346 1 9 1485 237 280 0 99 chr6 117989535 117989599 -31527438 - Lx7 LINE L1 -343 7353 7290 9 1485 7067 199 47 52 chr6 117989602 117990164 -31526873 - Lx7 LINE L1 -381 7315 6722 9 1485 4601 77 12 0 chr6 117990164 117990758 -31526279 - MT2B LTR ERVL 0 601 1 9 1485 7067 180 40 83 chr6 117990758 117992215 -31524822 - Lx7 LINE L1 -975 6721 5295 9 1485 195 42 0 0 chr6 117992215 117992239 -31524798 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 9 1485 1006 93 73 0 chr6 117992239 117992389 -31524648 - B2_Mm2 SINE B2 -34 161 1 9 1485 5726 146 26 139 chr6 117992389 117992703 -31524334 - Lx7 LINE L1 -586 5294 4987 9 1485 291 28 0 0 chr6 117992703 117992739 -31524298 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 9 1485 5726 146 26 139 chr6 117992739 117993219 -31523818 - Lx7 LINE L1 -894 4986 4496 9 1485 288 0 0 0 chr6 117996422 117996454 -31520583 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1485 390 129 0 0 chr6 117996485 117996547 -31520490 + (TATG)n Simple_repeat Simple_repeat 2 63 0 9 1485 468 0 0 0 chr6 117997316 117997368 -31519669 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1485 199 253 215 0 chr6 117997514 117997593 -31519444 + MIRc SINE MIR 56 151 -117 9 1485 1623 156 199 6 chr6 117998833 117998984 -31518053 - ORR1C1 LTR MaLR 0 378 225 9 1485 477 0 0 0 chr6 117998984 117999037 -31518000 + (TA)n Simple_repeat Simple_repeat 1 53 0 9 1485 279 0 0 0 chr6 117999037 117999067 -31517970 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1485 1623 156 199 6 chr6 117999067 117999231 -31517806 - ORR1C1 LTR MaLR -154 224 3 9 1485 1210 55 7 0 chr6 117999433 117999579 -31517458 + B1_Mus2 SINE Alu 1 147 0 1 1485 1255 194 39 28 chr6 117999745 118000000 -31517037 - ORR1D1 LTR MaLR 0 374 117 1 1485 399 186 144 0 chr6 118000000 118000097 -31516940 - ORR1D1 LTR MaLR -258 116 6 1 1485 2953 125 63 37 chr6 118000471 118000979 -31516058 + RLTR28 LTR ERVL 1 521 -3 2 1485 1734 204 54 3 chr6 118002496 118002850 -31514187 + MTD LTR MaLR 5 376 -43 3 1485 1216 56 0 0 chr6 118003218 118003362 -31513675 + B1_Mus2 SINE Alu 2 145 -2 4 1485 210 267 50 0 chr6 118003631 118003691 -31513346 + BC1_Mm scRNA scRNA 23 85 -67 5 1485 266 333 43 0 chr6 118003962 118004055 -31512982 + MLT1B LTR MaLR 260 356 -34 6 1485 651 278 155 18 chr6 118004098 118004376 -31512661 + Tigger7 DNA MER2_type 45 360 -2131 7 1485 317 247 47 0 chr6 118004526 118004611 -31512426 + L2 LINE L2 2972 3060 -359 8 1485 540 81 0 0 chr6 118004883 118004957 -31512080 + (CAA)n Simple_repeat Simple_repeat 1 74 0 9 1485 436 250 79 0 chr6 118005175 118005315 -31511722 - L1MB7 LINE L1 -53 6131 5981 1 1485 556 331 57 4 chr6 118005317 118005692 -31511345 - L1MB7 LINE L1 -483 5697 5290 1 1485 366 274 31 44 chr6 118005888 118006089 -31510948 - Lx8 LINE L1 -390 5907 5715 1 1485 333 190 23 23 chr6 118006087 118006173 -31510864 - L1MB7 LINE L1 -847 5293 5208 1 1485 667 144 19 13 chr6 118006248 118006403 -31510634 + CT-rich Low_complexity Low_complexity 4 159 0 1 1485 373 333 10 0 chr6 118006403 118006499 -31510538 - PB1D10 SINE Alu -15 102 6 1 1485 317 340 9 48 chr6 118006407 118006512 -31510525 - ID_B1 SINE B4 -45 179 79 1 1485 414 188 0 111 chr6 118006527 118006635 -31510402 - L1MB7 LINE L1 -995 5151 5056 1 1485 264 305 83 10 chr6 118006717 118006813 -31510224 + PB1D10 SINE Alu 3 105 -12 1 1485 992 340 18 20 chr6 118006900 118007016 -31510021 + Lx9 LINE L1 6951 7060 -584 1 1485 258 56 0 0 chr6 118007016 118007052 -31509985 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1485 992 309 79 83 chr6 118007052 118007606 -31509431 + Lx9 LINE L1 6918 7472 -1 1 1485 834 288 73 56 chr6 118007606 118007893 -31509144 + B4 SINE B4 1 292 0 1 1485 408 232 0 0 chr6 118007897 118008048 -31508989 + (CA)n Simple_repeat Simple_repeat 2 152 0 1 1485 336 253 30 3 chr6 118008068 118008184 -31508853 - L1MA4 LINE L1 -370 5930 5780 2 1485 189 0 0 0 chr6 118008184 118008205 -31508832 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1485 3066 42 16 11 chr6 118008224 118008606 -31508431 - L1Md_F2 LINE L1 0 6582 6199 2 1485 760 292 52 23 chr6 118008608 118008952 -31508085 - L1MA7 LINE L1 -462 5829 5476 2 1485 1176 49 14 0 chr6 118008988 118009130 -31507907 - B1_Mm SINE Alu -2 145 2 2 1485 471 185 0 0 chr6 118009161 118009253 -31507784 + CT-rich Low_complexity Low_complexity 3 94 0 2 1485 668 216 209 6 chr6 118009260 118009437 -31507600 - B3 SINE B2 -2 214 2 2 1485 1324 165 10 0 chr6 118009467 118009673 -31507364 - B3 SINE B2 -7 209 2 2 1485 407 19 0 19 chr6 118009741 118009794 -31507243 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1485 829 258 108 5 chr6 118009849 118010052 -31506985 - B4A SINE B4 0 292 69 2 1485 2084 319 95 38 chr6 118010091 118010725 -31506312 - L1_Mur3 LINE L1 -553 5327 4692 3 1485 3141 61 0 27 chr6 118010725 118011132 -31505905 - MTA_Mm LTR MaLR 0 396 1 3 1485 2084 319 95 38 chr6 118011132 118011840 -31505197 - L1_Mur3 LINE L1 -1189 4691 3915 3 1485 402 21 0 0 chr6 118011840 118011887 -31505150 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 1485 2084 319 95 38 chr6 118011887 118012121 -31504916 - L1_Mur3 LINE L1 -1966 3914 3653 3 1485 435 38 0 0 chr6 118012121 118012174 -31504863 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1485 2084 319 95 38 chr6 118012174 118012282 -31504755 - L1_Mur3 LINE L1 -2228 3652 3548 3 1485 839 87 9 35 chr6 118012290 118012525 -31504512 + (TCTCTG)n Simple_repeat Simple_repeat 1 228 0 3 1485 320 306 68 33 chr6 118012574 118012822 -31504215 - L1_Mur3 LINE L1 -2649 3494 3206 3 1485 340 303 54 61 chr6 118012843 118013121 -31503916 - L1_Mur3 LINE L1 -3585 2555 2275 3 1485 410 190 129 31 chr6 118013448 118013615 -31503422 - L1M5 LINE L1 -613 5581 5400 3 1485 246 62 0 0 chr6 118016132 118016164 -31500873 + (TCCCC)n Simple_repeat Simple_repeat 2 33 0 3 1485 329 255 160 0 chr6 118017307 118017401 -31499636 - MIRm SINE MIR -5 271 163 3 1485 1379 122 19 5 chr6 118017422 118017637 -31499400 + URR1A DNA MER1_type 5 222 -4 3 1485 318 313 84 44 chr6 118018882 118019109 -31497928 - L1M5 LINE L1 -2201 3945 3710 3 1485 502 290 11 74 chr6 118019239 118019275 -31497762 - ID_B1 SINE B4 -2 222 125 4 1485 693 197 8 0 chr6 118019275 118019392 -31497645 - B1_Mur2 SINE Alu -31 118 1 4 1485 502 290 11 74 chr6 118019392 118019414 -31497623 - ID_B1 SINE B4 -2 124 59 4 1485 258 291 18 0 chr6 118019757 118019812 -31497225 - ID4_ SINE ID -22 61 6 4 1485 422 261 0 42 chr6 118019836 118019956 -31497081 - PB1D7 SINE Alu -1 119 5 4 1485 351 0 0 0 chr6 118021800 118021839 -31495198 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 4 1485 621 247 32 32 chr6 118021839 118021994 -31495043 - RSINE1 SINE B4 -9 156 2 4 1485 801 292 5 47 chr6 118022672 118022884 -31494153 + B3 SINE B2 1 203 -13 4 1485 607 202 26 4 chr6 118022884 118023117 -31493920 + (TATATG)n Simple_repeat Simple_repeat 1 238 0 4 1485 180 317 0 0 chr6 118025026 118025067 -31491970 + L2 LINE L2 93 133 -3286 4 1485 753 239 12 0 chr6 118026074 118026237 -31490800 + MTE2b LTR MaLR 210 374 -5 4 1485 501 17 0 0 chr6 118028584 118028642 -31488395 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1485 306 73 0 0 chr6 118029843 118029884 -31487153 + (CAG)n Simple_repeat Simple_repeat 1 41 0 5 1485 441 265 0 0 chr6 118031312 118031444 -31485593 + CT-rich Low_complexity Low_complexity 2 133 0 5 1485 870 176 35 0 chr6 118031453 118031595 -31485442 - B1_Mur2 SINE Alu 0 149 3 5 1485 713 198 13 34 chr6 118031632 118031827 -31485210 - B3 SINE B2 -11 184 1 5 1485 21 0 0 0 chr6 118034126 118034147 -31482890 + AT_rich Low_complexity Low_complexity 1 21 0 5 1485 317 133 0 32 chr6 118036618 118036680 -31480357 + (CATA)n Simple_repeat Simple_repeat 4 63 0 5 1485 707 171 11 23 chr6 118036691 118036865 -31480172 + (CATA)n Simple_repeat Simple_repeat 4 175 0 5 1485 354 305 29 0 chr6 118036874 118036979 -31480058 - RMER12 LTR ERVK -467 855 748 5 1485 1287 167 13 18 chr6 118037701 118037926 -31479111 - URR1B DNA MER1_type 0 225 2 5 1485 210 71 0 0 chr6 118040589 118040617 -31476420 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1485 333 0 0 0 chr6 118041571 118041608 -31475429 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1485 501 17 0 0 chr6 118041608 118041665 -31475372 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1485 317 339 62 0 chr6 118042191 118042303 -31474734 + L1M5 LINE L1 4980 5098 -1048 6 1485 2619 269 46 56 chr6 118042364 118043246 -31473791 + Lx9 LINE L1 5234 6137 -1336 6 1485 258 105 0 0 chr6 118043246 118043284 -31473753 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1485 2619 316 90 49 chr6 118043284 118043360 -31473677 + Lx9 LINE L1 6138 6243 -1230 6 1485 936 214 77 0 chr6 118043360 118043556 -31473481 + B3 SINE B2 2 212 -4 6 1485 2734 289 62 25 chr6 118043556 118043851 -31473186 + Lx9 LINE L1 6244 6684 -960 6 1485 216 0 0 0 chr6 118043851 118043875 -31473162 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 6 1485 2734 288 62 25 chr6 118043875 118044616 -31472421 + Lx9 LINE L1 6542 7441 -203 6 1485 393 86 0 0 chr6 118044621 118044679 -31472358 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1485 590 252 32 186 chr6 118044814 118045421 -31471616 + MTC-int LTR MaLR 285 866 -392 6 1485 650 248 39 158 chr6 118045406 118045736 -31471301 - MTD-int LTR MaLR -967 291 1 6 1485 244 196 36 0 chr6 118045736 118045792 -31471245 - MTD LTR MaLR 0 419 362 6 1485 265 274 102 7 chr6 118045867 118046014 -31471023 - MT2A LTR ERVL -6 527 367 7 1485 571 291 50 33 chr6 118046020 118046201 -31470836 - MT2A LTR ERVL -107 426 243 7 1485 331 308 8 77 chr6 118046213 118046343 -31470694 - RMER10B LTR ERVL 0 398 278 7 1485 180 0 0 0 chr6 118046421 118046441 -31470596 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1485 404 294 90 101 chr6 118046575 118046764 -31470273 - MT2A LTR ERVL -290 243 57 7 1485 308 321 104 0 chr6 118046675 118046781 -31470256 - MTE2a LTR MaLR -250 129 13 7 1485 383 264 122 75 chr6 118046803 118047057 -31469980 + L1M5 LINE L1 5317 5582 -580 7 1485 236 320 48 90 chr6 118047059 118047413 -31469624 + L1M5 LINE L1 3233 3571 -2575 7 1485 1225 205 5 0 chr6 118047437 118047652 -31469385 - B3 SINE B2 0 216 1 7 1485 1070 175 16 47 chr6 118047779 118048006 -31469031 - B3 SINE B2 -2 214 1 7 1485 737 291 42 13 chr6 118048053 118048363 -31468674 - L1M2 LINE L1 -1449 4694 4376 7 1485 883 140 258 0 chr6 118048373 118048551 -31468486 + URR1B DNA MER1_type 2 225 0 8 1485 321 264 71 43 chr6 118048652 118048686 -31468351 + Lx6 LINE L1 7481 7517 -179 8 1485 441 0 0 0 chr6 118048686 118048735 -31468302 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1485 336 234 114 44 chr6 118048735 118048920 -31468117 + Lx6 LINE L1 7265 7460 0 8 1485 468 0 0 0 chr6 118049017 118049069 -31467968 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 8 1485 348 103 0 0 chr6 118049069 118049127 -31467910 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 8 1485 358 240 51 20 chr6 118049132 118049230 -31467807 - L1M2 LINE L1 -3016 3127 3027 7 1485 236 265 59 0 chr6 118049234 118049302 -31467735 - ID_B1 SINE B4 -4 220 149 8 1485 2278 251 106 39 chr6 118049987 118050762 -31466275 - Lx8 LINE L1 -30 7443 6617 8 1485 558 210 0 0 chr6 118050764 118050888 -31466149 + (TA)n Simple_repeat Simple_repeat 1 124 0 8 1485 1375 238 34 2 chr6 118050889 118051322 -31465715 - MT2A LTR ERVL -40 493 1 8 1485 454 263 55 32 chr6 118051355 118051781 -31465256 - Lx8 LINE L1 -1299 6174 5707 8 1485 9230 179 74 18 chr6 118051914 118056782 -31460255 - L1VL2 LINE L1 -387 5796 471 8 1485 672 186 129 23 chr6 118057028 118057160 -31459877 - B1_Mus2 SINE Alu 0 147 2 9 1485 193 79 24 95 chr6 118058998 118059040 -31457997 + L3 LINE CR1 1119 1157 -3332 9 1485 228 310 117 39 chr6 118060082 118060287 -31456750 + RMER15 LTR ERVL 352 572 -3 9 1485 500 252 47 0 chr6 118060545 118060652 -31456385 + PB1D10 SINE Alu 3 114 -3 9 1485 1180 133 11 11 chr6 118060930 118061112 -31455925 + B2_Mm2 SINE B2 2 183 -12 9 1485 663 202 122 42 chr6 118061283 118061571 -31455466 - RMER1B Other Other -617 449 41 9 1485 669 213 102 84 chr6 118062059 118062285 -31454752 + L1MCa LINE L1 459 688 -5820 9 1485 982 129 38 27 chr6 118062374 118062557 -31454480 + B2_Mm2 SINE B2 8 192 -3 9 1485 539 280 172 14 chr6 118062684 118062849 -31454188 - MTEa LTR MaLR -7 372 171 9 1485 408 20 0 0 chr6 118062849 118062898 -31454139 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1485 539 244 577 14 chr6 118062898 118063012 -31454025 - MTEa LTR MaLR -209 170 1 9 1485 857 279 101 58 chr6 118063019 118063465 -31453572 + L1MB8 LINE L1 5623 6087 -91 1 1485 626 191 121 153 chr6 118064811 118065158 -31451879 - RLTR15 LTR ERVK -18 341 6 1 1485 271 240 20 0 chr6 118065489 118065539 -31451498 + MER58A DNA MER1_type 2 52 -172 1 1485 379 234 37 18 chr6 118065573 118065682 -31451355 + MER58A DNA MER1_type 114 224 0 1 1485 243 314 155 31 chr6 118065904 118066098 -31450939 - L2a LINE L2 -272 3154 2937 1 1485 648 288 136 0 chr6 118066768 118067018 -31450019 - MER58B DNA MER1_type -12 329 46 1 1485 1365 140 58 21 chr6 118067047 118067287 -31449750 + ORR1B1 LTR MaLR 146 394 0 1 1485 1200 61 0 39 chr6 118067966 118068119 -31448918 + B1_Mm SINE Alu 1 147 0 1 1485 239 104 0 20 chr6 118068119 118068168 -31448869 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 1485 253 295 31 10 chr6 118068266 118068362 -31448675 + MIR SINE MIR 164 261 -1 1 1485 511 246 121 15 chr6 118068377 118068509 -31448528 + B1F SINE Alu 3 148 -1 1 1485 225 0 0 0 chr6 118069884 118069909 -31447128 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1 1485 1291 48 0 0 chr6 118071267 118071414 -31445623 - B1_Mus2 SINE Alu 0 147 1 1 1485 182 81 108 0 chr6 118071868 118071905 -31445132 + L2a LINE L2 3385 3425 -1 1 1485 224 342 108 0 chr6 118072280 118072391 -31444646 + MER5A DNA MER1_type 67 189 0 1 1485 236 347 194 77 chr6 118072497 118072925 -31444112 + MLT1K LTR MaLR 27 504 -91 1 1485 200 255 16 157 chr6 118073319 118073440 -31443597 + MIRm SINE MIR 153 256 -20 1 1485 540 294 116 48 chr6 118073961 118074229 -31442808 - B4 SINE B4 -6 286 1 1 1485 234 200 0 35 chr6 118074670 118074727 -31442310 - MARNA DNA Mariner -135 451 397 1 1485 1230 55 14 0 chr6 118075283 118075428 -31441609 + B1_Mus1 SINE Alu 2 148 0 1 1485 264 228 62 12 chr6 118075465 118075545 -31441492 + L1ME2 LINE L1 6021 6104 -60 1 1485 1251 179 15 0 chr6 118075658 118075859 -31441178 + B3 SINE B2 2 205 -11 1 1485 333 208 0 0 chr6 118076864 118076936 -31440101 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1485 278 369 83 60 chr6 118077104 118077320 -31439717 - L2c LINE L2 -79 3308 3088 1 1485 893 196 162 0 chr6 118077945 118078118 -31438919 + B3 SINE B2 3 203 -13 1 1485 30 0 0 0 chr6 118079912 118079942 -31437095 + AT_rich Low_complexity Low_complexity 1 30 0 1 1485 906 218 0 7 chr6 118081099 118081247 -31435790 + B1_Mur2 SINE Alu 1 147 -2 1 1485 276 231 0 0 chr6 118081505 118081583 -31435454 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1485 222 322 17 0 chr6 118082020 118082079 -31434958 + ID4 SINE ID 2 61 -22 1 1485 198 0 0 0 chr6 118082080 118082102 -31434935 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1485 527 205 98 98 chr6 118082408 118082581 -31434456 + L1MEc LINE L1 51 223 -6177 1 1485 490 125 20 20 chr6 118082599 118082697 -31434340 + (TATG)n Simple_repeat Simple_repeat 2 99 0 1 1485 855 293 137 52 chr6 118082703 118083077 -31433960 + L1MEc LINE L1 254 687 -5713 1 1485 1240 75 0 0 chr6 118083077 118083224 -31433813 + B1_Mus2 SINE Alu 1 147 0 1 1485 855 293 137 52 chr6 118083224 118083367 -31433670 + L1MEc LINE L1 688 815 -5585 1 1485 345 300 0 62 chr6 118083368 118083464 -31433573 + ID_B1 SINE B4 75 164 -60 1 1485 245 312 12 36 chr6 118083390 118083473 -31433564 + B1_Mus1 SINE Alu 11 91 -57 1 1485 297 176 120 13 chr6 118083473 118083548 -31433489 + Lx2B LINE L1 6652 6734 -266 1 1485 274 360 0 0 chr6 118083616 118083791 -31433246 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 1485 218 278 58 67 chr6 118083870 118083974 -31433063 - B2_Mm2 SINE B2 -73 122 20 1 1485 1061 181 105 16 chr6 118084223 118084414 -31432623 + B3 SINE B2 2 209 -7 1 1485 246 254 40 40 chr6 118084623 118084697 -31432340 + MIRb SINE MIR 101 174 -94 1 1485 369 246 173 8 chr6 118084996 118085123 -31431914 - MER58B DNA MER1_type -72 269 122 1 1485 377 257 72 18 chr6 118085211 118085322 -31431715 - PB1 SINE Alu -10 117 1 1 1485 266 326 97 100 chr6 118085661 118086012 -31431025 + ORR1E LTR MaLR 10 359 0 1 1485 362 247 11 105 chr6 118086034 118086129 -31430908 + MT2B LTR ERVL 155 240 -361 1 1485 544 186 50 20 chr6 118086044 118086143 -31430894 + B1_Mur2 SINE Alu 2 103 -46 1 1485 255 324 27 27 chr6 118086334 118086445 -31430592 - PB1D10 SINE Alu -6 111 1 1 1485 21 0 0 0 chr6 118086542 118086563 -31430474 + AT_rich Low_complexity Low_complexity 1 21 0 1 1485 207 0 0 0 chr6 118086986 118087009 -31430028 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1485 617 170 0 19 chr6 118087492 118087600 -31429437 - PB1D9 SINE Alu -9 111 6 1 1485 311 278 0 91 chr6 118087516 118087615 -31429422 - MT2B LTR ERVL -357 244 155 1 1485 246 217 14 42 chr6 118087955 118088027 -31429010 + L1ME3 LINE L1 5904 5973 -189 1 1485 30 0 0 0 chr6 118089097 118089127 -31427910 + GC_rich Low_complexity Low_complexity 1 30 0 1 1485 405 0 0 0 chr6 118089667 118089712 -31427325 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1485 591 266 42 0 chr6 118090317 118090460 -31426577 + B1F SINE Alu 1 149 0 1 1485 1005 277 48 15 chr6 118090956 118091285 -31425752 + MTD LTR MaLR 19 404 -15 1 1485 246 241 19 0 chr6 118091302 118091356 -31425681 + RMER15 LTR ERVL 1 55 -520 1 1485 1211 221 290 32 chr6 118091375 118091809 -31425228 + RMER15 LTR ERVL 27 572 -3 1 1485 208 339 0 0 chr6 118091887 118091949 -31425088 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1485 2304 131 70 0 chr6 118091951 118092294 -31424743 - ORR1B2 LTR MaLR 0 367 1 1 1485 7004 152 51 6 chr6 118092294 118093557 -31423480 - ORR1B2-int LTR MaLR 0 1509 191 1 1485 245 354 77 23 chr6 118094157 118094287 -31422750 + Tigger5 DNA MER2_type 2270 2406 0 1 1485 2491 124 42 13 chr6 118094435 118094818 -31422219 + ORR1B1 LTR MaLR 1 394 0 1 1485 627 232 64 21 chr6 118095054 118095195 -31421842 + RSINE1 SINE B4 1 147 -18 1 1485 440 315 54 12 chr6 118095403 118095570 -31421467 + MER89-int LTR ERV1 1401 1574 -5227 1 185 1758 171 28 90 chr6 118095591 118095990 -31421047 - ORR1D1 LTR MaLR 0 374 1 1 1486 1172 223 63 36 chr6 118096250 118096649 -31420388 - ORR1B2 LTR MaLR -8 459 170 1 1486 431 288 25 32 chr6 118096660 118096818 -31420219 + MER89-int LTR ERV1 2110 2266 -4535 1 1486 1050 234 5 9 chr6 118096838 118097049 -31419988 - B3 SINE B2 -6 210 1 1 1486 509 262 34 102 chr6 118097184 118097507 -31419530 + RLTR15 LTR ERVK 48 348 -11 1 1486 252 0 0 0 chr6 118097753 118097781 -31419256 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1486 689 287 137 20 chr6 118097857 118098156 -31418881 + MT2A LTR ERVL 193 526 -7 1 1486 536 306 28 11 chr6 118098476 118098658 -31418379 + MER89-int LTR ERV1 3526 3710 -3091 1 1486 738 0 0 0 chr6 118098875 118098957 -31418080 + (GAGAA)n Simple_repeat Simple_repeat 1 82 0 1 1486 308 305 72 68 chr6 118098973 118099223 -31417814 + MER89-int LTR ERV1 3992 4242 -2559 1 1486 474 268 47 4 chr6 118099234 118099478 -31417559 - RMER15 LTR ERVL 0 575 275 1 1486 198 0 0 0 chr6 118099631 118099653 -31417384 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1486 9083 154 53 31 chr6 118106017 118107816 -31409221 - Lx7 LINE L1 -834 5046 3207 1 1486 7101 193 114 60 chr6 118107813 118109977 -31407060 + Lx7 LINE L1 5046 7327 -369 1 1486 552 53 0 0 chr6 118109994 118110070 -31406967 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1486 3530 170 67 51 chr6 118110071 118110859 -31406178 + RLTR22_Mur LTR ERVK 5 805 -1043 1 1486 189 100 0 0 chr6 118110909 118110932 -31406105 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1486 1239 68 0 0 chr6 118110932 118111080 -31405957 - B1_Mus1 SINE Alu 0 148 1 1 1486 189 100 0 0 chr6 118111080 118111086 -31405951 + (T)n Simple_repeat Simple_repeat 1 6 0 1 1486 817 189 121 27 chr6 118111298 118111521 -31405516 + RLTR22_Mur LTR ERVK 1603 1846 -2 1 1486 285 98 0 0 chr6 118111521 118111562 -31405475 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1486 1232 186 43 4 chr6 118111564 118111825 -31405212 + Lx7 LINE L1 7393 7663 -33 1 1486 723 121 14 47 chr6 118111959 118112107 -31404930 - L1Md_F2 LINE L1 -2 6580 6438 1 1486 557 268 175 32 chr6 118112188 118112439 -31404598 - B4A SINE B4 -2 290 4 1 1486 188 316 75 12 chr6 118112553 118112633 -31404404 + L2a LINE L2 3326 3410 -16 1 1486 2176 257 59 54 chr6 118113639 118114383 -31402654 + Lx8 LINE L1 6667 7414 -59 1 1486 189 0 0 0 chr6 118116457 118116478 -31400559 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1486 21 57 0 0 chr6 118116750 118116785 -31400252 + GC_rich Low_complexity Low_complexity 1 35 0 1 1486 468 128 0 0 chr6 118117056 118117134 -31399903 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1486 216 0 0 0 chr6 118118084 118118108 -31398929 + (GGCTG)n Simple_repeat Simple_repeat 3 26 0 1 1486 4043 58 17 21 chr6 118120032 118120641 -31396396 + ORR1A1-int LTR MaLR 1214 1790 -2 1 1486 2506 55 0 0 chr6 118120641 118120952 -31396085 + ORR1A1 LTR MaLR 36 346 0 1 1486 191 167 24 0 chr6 118121774 118121816 -31395221 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1486 236 310 46 35 chr6 118122078 118122165 -31394872 - PB1D9 SINE Alu -50 99 12 1 1486 208 158 26 0 chr6 118126456 118126494 -31390543 + GA-rich Low_complexity Low_complexity 1 39 0 1 1486 989 84 0 7 chr6 118126573 118126716 -31390321 - B1_Mus1 SINE Alu -1 147 6 1 1486 200 167 0 0 chr6 118126716 118126746 -31390291 + (CCG)n Simple_repeat Simple_repeat 2 31 0 1 1486 333 0 0 0 chr6 118127628 118127665 -31389372 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1486 306 219 96 0 chr6 118127852 118127925 -31389112 - ID4 SINE ID -1 82 3 1 1486 183 42 0 0 chr6 118128851 118128875 -31388162 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1486 330 45 0 0 chr6 118129194 118129238 -31387799 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1486 183 349 12 24 chr6 118131652 118131737 -31385300 + L2a LINE L2 3335 3418 -8 1 1486 762 167 7 14 chr6 118132913 118133059 -31383978 - URR1A DNA MER1_type -3 223 79 1 1486 2375 92 3 24 chr6 118133149 118133485 -31383552 + ORR1A4 LTR MaLR 1 329 0 1 1486 588 205 8 24 chr6 118135050 118135175 -31381862 - MTC LTR MaLR -295 126 4 1 1486 343 276 93 40 chr6 118135182 118135333 -31381704 - L1MB3 LINE L1 -347 5836 5678 1 1486 1477 174 10 41 chr6 118135383 118135677 -31381360 + MTC LTR MaLR 137 421 0 2 1486 236 191 0 0 chr6 118135703 118135750 -31381287 + B3A SINE B2 2 48 -150 2 1486 2058 175 37 11 chr6 118138167 118138549 -31378488 + MTB_Mm LTR MaLR 16 407 0 2 1486 794 358 81 29 chr6 118139271 118139792 -31377245 + Lx8 LINE L1 6924 7471 -2 2 1486 485 276 27 84 chr6 118139781 118140042 -31376995 + L1MB5 LINE L1 5295 5540 -640 2 1486 536 54 0 0 chr6 118140269 118140343 -31376694 + B1_Mur4 SINE Alu 77 150 0 2 1486 180 0 0 0 chr6 118140345 118140365 -31376672 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1486 495 319 102 28 chr6 118140417 118140672 -31376365 + L1MB5 LINE L1 5901 6174 0 2 1486 1254 222 133 41 chr6 118140778 118141145 -31375892 + MTD LTR MaLR 7 407 -12 2 1486 396 0 0 0 chr6 118143380 118143424 -31373613 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1486 257 207 16 49 chr6 118144124 118144185 -31372852 + MIRb SINE MIR 121 179 -89 2 1486 21 36 0 0 chr6 118146482 118146510 -31370527 + GC_rich Low_complexity Low_complexity 1 28 0 2 1486 232 270 8 67 chr6 118147374 118147493 -31369544 + (CGGGG)n Simple_repeat Simple_repeat 3 114 0 2 1486 289 264 43 52 chr6 118148790 118149022 -31368015 + RMER17D2 LTR ERVK 313 542 -267 2 1486 330 167 0 0 chr6 118149902 118149962 -31367075 + CT-rich Low_complexity Low_complexity 3 62 0 2 1486 269 262 16 0 chr6 118149973 118150034 -31367003 - ID4_ SINE ID -9 74 13 2 1486 223 205 0 43 chr6 118151042 118151088 -31365949 + C-rich Low_complexity Low_complexity 5 48 0 2 1486 348 24 0 0 chr6 118152378 118152419 -31364618 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1486 400 288 41 48 chr6 118153778 118153924 -31363113 + MER3 DNA MER1_type 63 207 -2 2 1486 236 279 73 0 chr6 118157154 118157222 -31359815 - MTEa LTR MaLR -15 364 292 2 1486 1188 255 45 23 chr6 118157459 118157812 -31359225 - ORR1D2 LTR MaLR -8 362 2 2 1486 36317 31 0 1 chr6 118159154 118165804 -31351233 - L1Md_T LINE L1 0 6585 5 2 1486 240 35 0 0 chr6 118166368 118166397 -31350640 + (TTCCC)n Simple_repeat Simple_repeat 4 32 0 2 1486 194 105 26 0 chr6 118167026 118167064 -31349973 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1486 185 161 53 21 chr6 118167084 118167179 -31349858 + (TCTG)n Simple_repeat Simple_repeat 3 100 0 2 1486 255 262 0 0 chr6 118167184 118167245 -31349792 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1486 1135 57 50 0 chr6 118167337 118167477 -31349560 + B1_Mus2 SINE Alu 1 147 0 2 1486 25 31 0 0 chr6 118167477 118167509 -31349528 + AT_rich Low_complexity Low_complexity 1 32 0 2 1486 674 233 192 0 chr6 118167516 118167688 -31349349 - B3 SINE B2 -7 209 5 2 1486 326 238 16 0 chr6 118167840 118167903 -31349134 - L1MEg LINE L1 -4139 1945 1882 2 1486 1596 284 86 30 chr6 118167920 118168732 -31348305 - L1M2 LINE L1 -1162 4981 4124 2 1486 648 295 114 36 chr6 118168792 118169051 -31347986 + RMER5 LTR ERV1 70 352 -182 2 1486 429 20 0 0 chr6 118169051 118169101 -31347936 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1486 648 295 114 36 chr6 118169101 118169200 -31347837 + RMER5 LTR ERV1 353 455 -79 2 1486 434 281 144 68 chr6 118170478 118170765 -31346272 - MLT1G3 LTR MaLR 0 579 261 2 1486 362 189 79 26 chr6 118170785 118170899 -31346138 + Lx8 LINE L1 6919 7038 -435 2 1486 341 306 15 61 chr6 118170956 118171088 -31345949 + Lx8 LINE L1 7194 7319 -154 2 1486 428 77 15 0 chr6 118171093 118171158 -31345879 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1486 540 328 55 27 chr6 118172987 118173258 -31343779 + MER31A LTR ERV1 45 316 -150 2 1486 347 160 0 13 chr6 118173262 118173338 -31343699 + CT-rich Low_complexity Low_complexity 2 76 0 2 1486 896 261 40 40 chr6 118173404 118173676 -31343361 - B4A SINE B4 -16 276 5 2 1486 326 231 108 69 chr6 118173778 118173908 -31343129 + MLT1F2 LTR MaLR 426 560 0 2 1486 4278 189 60 37 chr6 118177105 118177997 -31339040 + Lx6 LINE L1 5823 6735 -725 2 1486 35985 85 15 5 chr6 118178006 118184283 -31332754 - L1Md_F2 LINE L1 0 6582 231 2 1486 1858 197 67 85 chr6 118184317 118184762 -31332275 + Lx6 LINE L1 6755 7191 -269 2 1486 1162 96 11 0 chr6 118184760 118184938 -31332099 - L1Md_F2 LINE L1 0 6582 6403 2 1486 1049 181 116 55 chr6 118184938 118185193 -31331844 + Lx6 LINE L1 7231 7696 0 2 1486 913 160 0 14 chr6 118185726 118185872 -31331165 + B1_Mur4 SINE Alu 6 149 -1 2 1486 541 258 178 93 chr6 118185887 118186459 -31330578 - L1MD1 LINE L1 -25 6217 5597 2 1486 403 149 114 1 chr6 118186459 118186557 -31330480 - B1_Mur1 SINE Alu 0 149 13 2 1486 239 350 68 0 chr6 118186576 118186708 -31330329 - L1MC LINE L1 -735 5598 5458 2 1486 231 304 167 6 chr6 118186749 118186911 -31330126 + ORR1E LTR MaLR 1 188 -171 2 1486 242 121 50 33 chr6 118186911 118186956 -31330081 + T-rich Low_complexity Low_complexity 17 63 0 2 1486 1196 55 7 0 chr6 118186956 118187101 -31329936 - B1_Mus2 SINE Alu -1 146 1 2 1486 242 121 50 33 chr6 118187101 118187115 -31329922 + T-rich Low_complexity Low_complexity 3 16 0 2 1486 732 246 102 70 chr6 118187188 118187234 -31329803 - L1MDa LINE L1 -4510 2123 2086 2 1486 1693 31 0 0 chr6 118187234 118187426 -31329611 - B2_Mm1a SINE B2 0 193 2 2 1486 732 279 110 52 chr6 118187426 118187921 -31329116 - L1MDa LINE L1 -4548 2085 1536 2 1486 2970 289 90 43 chr6 118187917 118189198 -31327839 + Lx7 LINE L1 6160 7472 -1 2 1486 252 253 33 33 chr6 118189231 118189321 -31327716 - Lx8 LINE L1 -2 7471 7382 2 1486 1230 308 26 11 chr6 118189308 118189327 -31327710 - Lx8 LINE L1 -239 7234 7216 2 1486 558 0 0 0 chr6 118189327 118189389 -31327648 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1486 2092 294 114 14 chr6 118189389 118190314 -31326723 - Lx8 LINE L1 -258 7215 6197 2 1486 406 132 14 42 chr6 118190416 118190558 -31326479 + (CA)n Simple_repeat Simple_repeat 2 139 0 2 1486 429 20 0 0 chr6 118190558 118190608 -31326429 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1486 1801 252 160 39 chr6 118190617 118191067 -31325970 - Lx8 LINE L1 -1320 6153 5641 2 1486 1697 31 0 0 chr6 118191067 118191258 -31325779 - B2_Mm1t SINE B2 -1 192 2 2 1486 1801 251 131 68 chr6 118191258 118191673 -31325364 - Lx8 LINE L1 -240 5640 5173 2 1486 839 184 207 0 chr6 118191673 118191852 -31325185 - B3 SINE B2 0 216 1 2 1486 1801 251 131 68 chr6 118191852 118192253 -31324784 - Lx8 LINE L1 -708 5172 4790 2 1486 371 284 86 43 chr6 118192262 118192472 -31324565 + RMER12 LTR ERVK 770 988 -334 2 1486 237 178 0 0 chr6 118192479 118192524 -31324513 + (TATG)n Simple_repeat Simple_repeat 4 48 0 2 1486 2842 255 52 58 chr6 118192570 118192897 -31324140 - Lx8 LINE L1 -1164 4716 4381 2 1486 2542 138 8 3 chr6 118192897 118193289 -31323748 - ORR1B1 LTR MaLR 0 394 1 2 1486 2842 255 52 58 chr6 118193289 118193370 -31323667 - Lx8 LINE L1 -1500 4380 4319 2 1486 834 227 40 20 chr6 118193370 118193572 -31323465 - B3 SINE B2 -10 206 1 2 1486 2842 255 52 58 chr6 118193572 118194205 -31322832 - Lx8 LINE L1 -1562 4318 3681 2 1486 643 352 127 9 chr6 118194235 118194654 -31322383 + L2a LINE L2 2933 3400 -26 2 1486 940 107 8 0 chr6 118195132 118195263 -31321774 + B1_Mus1 SINE Alu 10 141 -7 2 1486 219 45 43 22 chr6 118195271 118195317 -31321720 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1486 659 284 174 36 chr6 118195330 118195692 -31321345 + MER89 LTR ERV1 137 548 -11 2 1486 263 325 12 24 chr6 118196285 118196367 -31320670 + ID4 SINE ID 2 82 -1 2 1486 235 284 9 60 chr6 118197240 118197356 -31319681 - MLT1G1 LTR MaLR -39 540 431 2 1486 327 277 46 101 chr6 118197356 118197534 -31319503 - MLT1G1 LTR MaLR -282 313 150 2 1486 249 207 94 35 chr6 118197660 118197745 -31319292 - MTEa LTR MaLR 0 379 290 2 1486 1694 168 91 0 chr6 118198310 118198619 -31318418 + ORR1D1 LTR MaLR 38 374 0 2 1486 550 267 39 82 chr6 118202177 118202385 -31314652 - RMER15 LTR ERVL -14 561 363 2 1486 382 221 111 59 chr6 118202393 118202528 -31314509 - RMER15 LTR ERVL -415 160 19 2 1486 1272 179 47 205 chr6 118205313 118205757 -31311280 - ORR1D1 LTR MaLR 0 374 1 2 1486 847 267 151 80 chr6 118206431 118206769 -31310268 - MTE2a LTR MaLR -17 362 1 2 1486 720 303 102 4 chr6 118207823 118208068 -31308969 + MER2 DNA MER2_type 77 345 0 2 1486 497 263 59 0 chr6 118208528 118208646 -31308391 + RSINE1 SINE B4 2 126 -39 2 1486 246 194 87 29 chr6 118208703 118208772 -31308265 + L1P5 LINE L1 5390 5462 -694 2 1486 425 276 38 0 chr6 118209520 118209625 -31307412 + PB1D10 SINE Alu 5 113 -4 2 1486 28 0 0 0 chr6 118209626 118209654 -31307383 + AT_rich Low_complexity Low_complexity 1 28 0 2 1486 1033 268 8 16 chr6 118210635 118210885 -31306152 - MTEa LTR MaLR -119 260 13 2 1486 183 80 0 0 chr6 118210942 118210967 -31306070 + (TGGG)n Simple_repeat Simple_repeat 4 28 0 2 1486 350 197 53 0 chr6 118212856 118212932 -31304105 - ID4_ SINE ID -3 80 1 2 1486 345 24 0 0 chr6 118213159 118213201 -31303836 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1486 690 269 64 0 chr6 118213507 118213678 -31303359 + B3A SINE B2 1 182 -16 2 1486 228 111 0 0 chr6 118213690 118213726 -31303311 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1486 782 273 56 23 chr6 118214333 118214599 -31302438 + MER45B DNA Tip100 641 915 -125 2 1486 233 177 51 0 chr6 118215182 118215261 -31301776 + (TCCA)n Simple_repeat Simple_repeat 3 85 0 2 1486 638 318 92 59 chr6 118215319 118215677 -31301360 - MLT1A LTR MaLR 0 374 5 2 1486 456 247 21 0 chr6 118215735 118215825 -31301212 - PB1D7 SINE Alu -7 113 22 2 1486 1313 276 80 11 chr6 118215825 118216177 -31300860 - MTE2b LTR MaLR 0 379 4 2 1486 267 31 0 0 chr6 118216226 118216258 -31300779 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 2 1486 207 333 15 0 chr6 118216258 118216324 -31300713 - L2a LINE L2 -14 3412 3346 2 1486 301 293 25 33 chr6 118216748 118216868 -31300169 + MTEb LTR MaLR 261 379 0 2 1486 456 35 0 0 chr6 118217009 118217067 -31299970 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1486 765 274 39 39 chr6 118217196 118217527 -31299510 - L1M4 LINE L1 -3264 2882 2552 2 1486 1101 324 43 27 chr6 118217544 118218058 -31298979 + MT2A LTR ERVL 1 522 -11 2 1486 268 247 46 23 chr6 118218093 118218180 -31298857 - L1ME1 LINE L1 -76 6103 6015 2 1486 332 242 61 0 chr6 118218579 118218711 -31298326 - L1M4 LINE L1 -3621 2525 2386 2 1486 566 298 76 0 chr6 118218713 118218871 -31298166 + ID_B1 SINE B4 1 170 -54 2 1486 245 277 193 0 chr6 118218797 118218880 -31298157 + PB1D7 SINE Alu 6 104 -16 2 1486 25 31 0 0 chr6 118219028 118219060 -31297977 + AT_rich Low_complexity Low_complexity 1 32 0 2 1486 513 321 32 30 chr6 118219339 118219708 -31297329 - L1_Mur3 LINE L1 -3986 1894 1525 3 1486 1600 41 0 15 chr6 118219883 118220079 -31296958 - B2_Mm1a SINE B2 0 193 1 3 1486 275 0 29 0 chr6 118220085 118220120 -31296917 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3 1486 1415 243 94 23 chr6 118220263 118220647 -31296390 + MTD LTR MaLR 1 411 -8 3 1486 1389 245 111 8 chr6 118222164 118222497 -31294540 + MTD LTR MaLR 2 372 -47 3 1486 1128 243 34 135 chr6 118222497 118222911 -31294126 - ORR1D1 LTR MaLR -2 372 1 3 1486 276 277 60 0 chr6 118222962 118223045 -31293992 - BC1_Mm scRNA scRNA -64 88 1 3 1486 362 220 51 17 chr6 118223405 118223536 -31293501 - L1MA4 LINE L1 -398 5899 5765 3 1486 2258 221 80 2 chr6 118223547 118224083 -31292954 - Lx6 LINE L1 0 7460 6883 3 1486 225 0 0 0 chr6 118224083 118224108 -31292929 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 1486 1656 223 54 56 chr6 118224108 118224678 -31292359 - Lx8 LINE L1 -55 7418 6850 3 1486 1012 252 55 74 chr6 118224693 118225262 -31291775 - L1M2 LINE L1 -2164 3979 3422 3 1486 729 316 81 89 chr6 118225262 118225780 -31291257 + MT2A LTR ERVL 4 517 -16 3 1486 537 303 30 43 chr6 118225791 118226123 -31290914 - L1M2 LINE L1 -2720 3423 3091 3 1486 871 269 150 55 chr6 118226123 118226449 -31290588 - ORR1E LTR MaLR -2 357 1 3 1486 537 303 30 43 chr6 118226449 118226513 -31290524 - L1M2 LINE L1 -3053 3090 3032 3 185 302 356 97 20 chr6 118226646 118227142 -31289895 - L1_Mur3 LINE L1 -2915 2965 2432 3 1487 3169 269 57 32 chr6 118227222 118228253 -31288784 - Lx8 LINE L1 -1 7472 6416 3 1487 243 0 0 0 chr6 118228429 118228456 -31288581 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1487 592 278 15 0 chr6 118228531 118228664 -31288373 + RSINE1 SINE B4 11 145 -20 3 1487 302 268 56 0 chr6 118228914 118228985 -31288052 - ID4_ SINE ID -6 77 3 3 1487 1839 196 12 94 chr6 118228998 118229414 -31287623 - RLTR14 LTR ERV1 0 382 1 3 1487 1158 176 116 139 chr6 118231331 118231668 -31285369 - ORR1A4 LTR MaLR 0 329 1 3 1487 235 276 53 0 chr6 118232110 118232186 -31284851 - MIRb SINE MIR -90 178 99 3 1487 2341 122 63 9 chr6 118232365 118232712 -31284325 - ORR1B2 LTR MaLR 0 367 2 3 1487 804 287 91 52 chr6 118232756 118233225 -31283812 - MLT2B4 LTR ERVL 0 556 1 3 1487 185 310 65 72 chr6 118233420 118233559 -31283478 - MIRc SINE MIR -129 139 2 3 1487 189 0 0 0 chr6 118234807 118234828 -31282209 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1487 877 303 85 57 chr6 118235602 118236643 -31280394 - L1MB4 LINE L1 -14 6166 5136 3 1487 703 288 108 32 chr6 118236890 118236998 -31280039 - L1MB4 LINE L1 -1041 5105 4992 3 1487 586 266 29 63 chr6 118236998 118237203 -31279834 - B3A SINE B2 0 198 1 3 1487 703 288 108 32 chr6 118237203 118237438 -31279599 - L1MB4 LINE L1 -1155 4991 4736 3 1487 327 276 73 73 chr6 118237647 118237811 -31279226 + MER2 DNA MER2_type 151 314 -31 3 1487 527 176 8 0 chr6 118238068 118238193 -31278844 + (TG)n Simple_repeat Simple_repeat 2 127 0 3 1487 222 229 0 0 chr6 118238253 118238349 -31278688 + (TG)n Simple_repeat Simple_repeat 2 97 0 3 1487 697 264 99 40 chr6 118238417 118238689 -31278348 - B4A SINE B4 0 292 5 3 1487 959 53 23 0 chr6 118238788 118238921 -31278116 - BC1_Mm scRNA scRNA -15 137 2 3 1487 497 297 188 53 chr6 118239048 118239293 -31277744 - B4A SINE B4 0 292 15 3 1487 242 247 12 94 chr6 118239370 118239455 -31277582 + B4A SINE B4 103 180 -112 3 1487 297 0 0 0 chr6 118239462 118239495 -31277542 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1487 560 296 135 8 chr6 118239514 118239759 -31277278 - B4A SINE B4 -16 276 1 3 1487 414 39 0 0 chr6 118239955 118240007 -31277030 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1487 261 368 24 24 chr6 118240563 118240730 -31276307 + MER117 DNA MER1_type 2 168 -29 3 1487 1212 63 0 0 chr6 118244405 118244563 -31272474 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 3 1487 230 0 0 32 chr6 118245052 118245083 -31271954 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 3 1487 1170 82 0 0 chr6 118245088 118245235 -31271802 - B1_Mus2 SINE Alu 0 147 1 3 1487 2159 40 0 0 chr6 118247998 118248251 -31268786 - L1Md_T LINE L1 0 6582 6330 3 1487 815 308 85 6 chr6 118248709 118249039 -31267998 + MLT1A LTR MaLR 4 359 -15 3 1487 236 205 39 6 chr6 118251877 118251949 -31265088 - MIRm SINE MIR -21 187 113 3 1487 555 16 0 0 chr6 118252111 118252175 -31264862 + (CTGGGG)n Simple_repeat Simple_repeat 1 64 0 3 1487 929 218 46 0 chr6 118253848 118254045 -31262992 + B3 SINE B2 2 207 -9 3 1487 405 177 0 0 chr6 118254412 118254491 -31262546 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 1487 2606 263 77 36 chr6 118254500 118255284 -31261753 - MTE-int LTR MaLR -251 1329 514 3 1487 603 270 36 0 chr6 118255275 118255412 -31261625 - ORR1E LTR MaLR -208 151 10 3 1487 276 267 64 64 chr6 118255832 118255972 -31261065 - ORR1E LTR MaLR -215 144 5 3 1487 249 306 58 21 chr6 118255988 118256093 -31260944 - MIR SINE MIR -91 185 70 3 1487 1868 165 89 6 chr6 118256103 118256450 -31260587 + ORR1C1 LTR MaLR 3 378 0 3 1487 225 311 0 0 chr6 118258561 118258667 -31258370 + GA-rich Low_complexity Low_complexity 3 108 0 3 1487 308 293 42 91 chr6 118258667 118258832 -31258205 - ORR1E LTR MaLR -168 191 35 3 1487 297 250 179 19 chr6 118258827 118258933 -31258104 - MLT1A1 LTR MaLR -285 123 1 3 1487 224 275 40 40 chr6 118259180 118259328 -31257709 + (TG)n Simple_repeat Simple_repeat 2 149 0 3 1487 181 158 35 17 chr6 118259336 118259394 -31257643 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 3 1487 300 221 19 65 chr6 118259410 118259625 -31257412 + (TATATG)n Simple_repeat Simple_repeat 1 205 0 3 1487 318 50 0 0 chr6 118259756 118259796 -31257241 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1487 360 0 0 0 chr6 118260448 118260488 -31256549 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1487 256 293 22 54 chr6 118260608 118260792 -31256245 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 3 1487 375 292 155 25 chr6 118260894 118261133 -31255904 + MER33 DNA MER1_type 5 274 -50 3 1487 423 0 0 0 chr6 118263051 118263098 -31253939 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1487 207 69 0 0 chr6 118263615 118263644 -31253393 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1487 399 269 35 61 chr6 118264446 118264561 -31252476 + B3 SINE B2 39 150 -66 3 1487 351 0 0 0 chr6 118264564 118264603 -31252434 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1487 198 0 0 0 chr6 118264646 118264668 -31252369 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 3 1487 550 135 9 9 chr6 118266340 118266445 -31250592 + GA-rich Low_complexity Low_complexity 3 107 0 3 1487 226 277 0 0 chr6 118267217 118267264 -31249773 + ID_B1 SINE B4 103 149 -75 3 1487 222 286 58 35 chr6 118267264 118267302 -31249735 + B1F SINE Alu 22 108 -41 3 1487 342 302 17 34 chr6 118267389 118267564 -31249473 + L1M5 LINE L1 5596 5767 -357 3 1487 182 128 26 0 chr6 118267765 118267804 -31249233 + CT-rich Low_complexity Low_complexity 4 43 0 3 1487 267 152 0 0 chr6 118267805 118267851 -31249186 + (TCTG)n Simple_repeat Simple_repeat 3 48 0 3 1487 723 239 111 75 chr6 118267854 118268134 -31248903 - B4A SINE B4 0 292 3 3 1487 186 133 0 0 chr6 118268250 118268280 -31248757 + (GAA)n Simple_repeat Simple_repeat 2 31 0 3 1487 895 120 10 0 chr6 118268513 118268722 -31248315 + (TC)n Simple_repeat Simple_repeat 1 211 0 3 1487 279 114 0 0 chr6 118268722 118268766 -31248271 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1487 889 325 113 67 chr6 118268839 118270042 -31246995 + L1MD2 LINE L1 3014 4272 -1874 3 1487 2525 248 125 25 chr6 118270008 118270840 -31246197 + Lx5 LINE L1 6455 7417 -43 3 1487 207 0 0 0 chr6 118270840 118270863 -31246174 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 3 1487 2525 248 20 3 chr6 118270863 118270881 -31246156 + Lx5 LINE L1 7032 7049 -1 3 1487 238 322 88 6 chr6 118270873 118271054 -31245983 + L1MD2 LINE L1 4251 4446 -1700 3 1487 292 309 205 21 chr6 118271090 118271695 -31245342 + L1MD2 LINE L1 4620 5335 -811 3 1487 327 167 26 0 chr6 118271728 118271842 -31245195 + (CA)n Simple_repeat Simple_repeat 2 118 0 3 1487 739 278 63 42 chr6 118272037 118272371 -31244666 + L1MD2 LINE L1 5618 5958 -401 3 1487 322 352 41 14 chr6 118272407 118272554 -31244483 + L1MD2 LINE L1 6060 6210 -32 3 1487 23 33 0 0 chr6 118272569 118272599 -31244438 + AT_rich Low_complexity Low_complexity 1 30 0 3 1487 248 77 0 25 chr6 118274016 118274056 -31242981 + (CCCCCT)n Simple_repeat Simple_repeat 6 44 0 3 1487 215 172 0 79 chr6 118274205 118274268 -31242769 - MIRb SINE MIR -99 169 112 3 1487 303 104 0 0 chr6 118275617 118275665 -31241372 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1487 533 204 48 0 chr6 118276980 118277083 -31239954 - B1F SINE Alu -41 108 1 3 1487 1220 42 7 0 chr6 118277281 118277425 -31239612 + B1_Mm SINE Alu 1 145 -2 3 1487 222 37 0 0 chr6 118277425 118277452 -31239585 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1487 1046 259 24 8 chr6 118277590 118277839 -31239198 + ORR1E LTR MaLR 3 255 -104 3 1487 316 186 34 0 chr6 118277793 118277852 -31239185 - B4 SINE B4 -226 66 6 3 1487 2360 215 84 21 chr6 118278037 118278641 -31238396 - L1_Rod LINE L1 -209 5638 4997 3 1487 817 163 7 0 chr6 118278641 118278782 -31238255 - URR1A DNA MER1_type 0 226 85 3 1487 3775 204 70 25 chr6 118278782 118279676 -31237361 + Lx9 LINE L1 6710 7644 0 3 1487 4372 262 78 20 chr6 118279769 118281098 -31235939 - Lx8 LINE L1 0 7473 6068 3 1487 1992 303 39 32 chr6 118281513 118282573 -31234464 - Lx8 LINE L1 -1799 5897 4829 3 1487 997 127 45 28 chr6 118282575 118282753 -31234284 - B2_Mm2 SINE B2 -14 181 1 3 1487 328 193 0 33 chr6 118282766 118282857 -31234180 + GA-rich Low_complexity Low_complexity 3 90 0 3 1487 2546 261 45 45 chr6 118282877 118283885 -31233152 - Lx8 LINE L1 -2082 3798 2791 3 1487 1048 266 27 4 chr6 118284016 118284273 -31232764 - B4 SINE B4 -24 268 6 3 1487 640 285 118 28 chr6 118284280 118284569 -31232468 - L1M3 LINE L1 -1902 4238 3924 3 1487 425 253 137 0 chr6 118284593 118284739 -31232298 - L1MB5 LINE L1 -22 6152 5987 3 1487 268 208 182 30 chr6 118284993 118285092 -31231945 - MTD LTR MaLR -137 282 169 3 1487 1878 87 193 16 chr6 118285387 118285692 -31231345 - RLTR15 LTR ERVK 0 359 1 3 1487 893 226 15 35 chr6 118288745 118288947 -31228090 - B3A SINE B2 0 198 1 4 1487 339 243 60 99 chr6 118290376 118290527 -31226510 + B1F1 SINE Alu 5 149 0 4 1487 525 104 0 0 chr6 118291045 118291122 -31225915 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 4 1487 468 0 0 0 chr6 118291593 118291645 -31225392 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1487 1034 54 131 26 chr6 118291646 118291799 -31225238 - B2_Mm2 SINE B2 -26 169 1 4 1487 270 183 13 101 chr6 118292433 118292512 -31224525 + Tigger1 DNA MER2_type 1303 1374 -1044 4 1487 423 0 0 0 chr6 118292765 118292812 -31224225 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1487 230 288 0 17 chr6 118292867 118292927 -31224110 - MER5A DNA MER1_type -118 71 13 4 1487 710 180 90 0 chr6 118293070 118293192 -31223845 + B1_Mur3 SINE Alu 2 134 -15 4 1487 396 169 0 0 chr6 118293192 118293269 -31223768 + (CATA)n Simple_repeat Simple_repeat 4 80 0 4 1487 861 179 91 11 chr6 118293283 118293458 -31223579 + B3A SINE B2 5 193 -5 4 1487 373 248 81 24 chr6 118293471 118293595 -31223442 - L1ME4a LINE L1 -281 5843 5713 4 1487 331 298 23 69 chr6 118293622 118293752 -31223285 - RSINE1 SINE B4 -4 161 38 4 1487 208 310 74 100 chr6 118294756 118294946 -31222091 - L2 LINE L2 -875 2544 2360 4 1487 474 313 11 63 chr6 118295067 118295241 -31221796 + RSINE1 SINE B4 1 165 0 4 1487 209 358 0 0 chr6 118296027 118296094 -31220943 + L2a LINE L2 3360 3426 0 4 1487 275 278 22 0 chr6 118296319 118296409 -31220628 - LTR16A1 LTR ERVL -47 409 318 4 1487 414 0 0 0 chr6 118297257 118297303 -31219734 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1487 21 0 0 0 chr6 118298239 118298260 -31218777 + AT_rich Low_complexity Low_complexity 1 21 0 4 1487 1657 156 71 86 chr6 118298318 118298669 -31218368 + ORR1B1 LTR MaLR 41 386 -8 4 1487 306 245 154 69 chr6 118300771 118300946 -31216091 - L1MC LINE L1 -2423 5459 5270 4 1487 641 239 125 25 chr6 118301292 118301532 -31215505 + Lx9 LINE L1 7254 7517 -127 4 1487 818 316 35 52 chr6 118302194 118302757 -31214280 + L1M2 LINE L1 4604 5157 -986 4 1487 558 0 0 0 chr6 118303224 118303286 -31213751 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 4 1487 195 186 0 0 chr6 118303287 118303330 -31213707 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1487 248 129 63 4 chr6 118303611 118303664 -31213373 + MLT2B2 LTR ERVL 1 54 -502 4 1487 239 281 70 62 chr6 118303673 118303802 -31213235 + MLT1A1 LTR MaLR 13 142 -266 4 1487 200 59 29 0 chr6 118303969 118304003 -31213034 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1487 1151 58 0 0 chr6 118304003 118304141 -31212896 - B1_Mus2 SINE Alu -9 138 1 4 1487 695 136 196 7 chr6 118304202 118304350 -31212687 - Lx4B LINE L1 -279 6779 6604 4 1487 265 323 160 22 chr6 118304354 118304585 -31212452 + L1MC4 LINE L1 7309 7571 -471 4 1487 333 333 8 8 chr6 118304735 118304851 -31212186 + GA-rich Low_complexity Low_complexity 2 117 0 4 1487 2898 88 8 12 chr6 118304851 118305253 -31211784 + MTB LTR MaLR 1 400 0 4 1487 452 172 129 20 chr6 118305327 118305428 -31211609 - PB1D9 SINE Alu -7 113 2 4 1487 720 150 45 7 chr6 118305936 118306090 -31210947 + Lx4A LINE L1 6006 6165 -893 4 1487 225 272 103 26 chr6 118306381 118306498 -31210539 + L1M5 LINE L1 5738 5863 -316 4 1487 1198 175 24 0 chr6 118306521 118306727 -31210310 + B3 SINE B2 6 216 0 4 1487 641 251 82 163 chr6 118306727 118306854 -31210183 + ORR1C2 LTR MaLR 1 123 -271 4 1487 228 35 0 0 chr6 118306854 118306883 -31210154 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 4 1487 378 0 0 0 chr6 118306885 118306927 -31210110 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1487 641 251 82 163 chr6 118306927 118307038 -31209999 + ORR1C2 LTR MaLR 124 196 -198 4 1487 822 30 0 0 chr6 118307038 118307139 -31209898 + (CA)n Simple_repeat Simple_repeat 1 101 0 4 1487 681 185 149 44 chr6 118307139 118307248 -31209789 + ORR1C2 LTR MaLR 181 300 -84 4 1487 405 0 0 0 chr6 118307248 118307293 -31209744 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1487 681 185 149 44 chr6 118307293 118307364 -31209673 + ORR1C2 LTR MaLR 301 380 -4 4 1487 1057 80 33 7 chr6 118307381 118307532 -31209505 + MTC LTR MaLR 259 413 -8 4 1487 319 229 118 0 chr6 118307768 118307921 -31209116 + L1MD LINE L1 2975 3145 -3001 4 1487 206 260 151 0 chr6 118308104 118308177 -31208860 + L4 LINE RTE 240 323 -1706 4 1487 342 0 0 0 chr6 118308517 118308555 -31208482 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1487 1154 51 0 0 chr6 118309306 118309443 -31207594 + B1_Mus1 SINE Alu 2 138 -10 4 1487 355 306 86 23 chr6 118309497 118309671 -31207366 + L1M2c LINE L1 2020 2204 -4585 4 1487 1517 187 61 20 chr6 118309721 118309753 -31207284 - ORR1D1 LTR MaLR -4 370 339 4 1487 2162 130 41 0 chr6 118309753 118310069 -31206968 + ORR1A4 LTR MaLR 1 329 0 4 1487 1517 187 61 20 chr6 118310069 118310331 -31206706 - ORR1D1 LTR MaLR -36 338 64 4 1487 3923 176 41 49 chr6 118310316 118311020 -31206017 + MTC-int LTR MaLR 465 1162 -96 4 1487 351 0 0 0 chr6 118311020 118311059 -31205978 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1487 3923 176 41 49 chr6 118311059 118311154 -31205883 + MTC-int LTR MaLR 1163 1258 0 4 1487 2347 150 71 5 chr6 118311154 118311549 -31205488 + MTC LTR MaLR 1 421 0 4 1487 761 276 0 0 chr6 118311725 118311881 -31205156 + RSINE1 SINE B4 2 157 -8 4 1487 1111 281 82 40 chr6 118311918 118312379 -31204658 + L1_Mur3 LINE L1 2094 2568 -3312 4 1487 243 0 0 0 chr6 118312379 118312406 -31204631 + (CATAA)n Simple_repeat Simple_repeat 2 28 0 4 1487 1111 281 82 40 chr6 118312406 118312575 -31204462 + L1_Mur3 LINE L1 2569 2750 -3130 4 1487 600 229 144 21 chr6 118312652 118312888 -31204149 + RLTR10A LTR ERVK 147 411 0 4 1487 362 239 44 31 chr6 118312992 118313152 -31203885 + L1M2c LINE L1 3523 3684 -3101 4 1487 531 253 33 44 chr6 118313724 118313906 -31203131 + L1_Rod LINE L1 900 1079 -6529 4 1487 948 225 161 22 chr6 118314077 118314550 -31202487 + L1_Rod LINE L1 1123 1667 -4180 4 1487 21 0 0 0 chr6 118314551 118314572 -31202465 + AT_rich Low_complexity Low_complexity 1 21 0 4 1487 231 279 27 158 chr6 118315534 118315717 -31201320 - RLTR22_Mur LTR ERVK -387 1461 1303 4 1487 652 325 26 5 chr6 118316166 118316358 -31200679 - B4A SINE B4 -3 289 94 4 1487 636 106 0 0 chr6 118316756 118316850 -31200187 + (CATA)n Simple_repeat Simple_repeat 2 95 0 4 1487 1215 35 7 0 chr6 118316854 118316996 -31200041 - B1_Mus1 SINE Alu -5 143 1 4 1487 535 232 139 55 chr6 118318868 118319149 -31197888 - MLT2B2 LTR ERVL 0 562 171 4 1487 13202 20 39 39 chr6 118319444 118320390 -31196647 + L1_Mm LINE L1 3922 4904 -979 4 1487 226 183 46 77 chr6 118320390 118320455 -31196582 - RMER20A LTR ERVK -268 248 186 4 1487 13202 20 39 39 chr6 118320455 118321109 -31195928 + L1_Mm LINE L1 4905 5586 -297 4 1487 8331 48 0 0 chr6 118321109 118322105 -31194932 + L1Md_T LINE L1 5587 6582 0 4 1487 388 0 39 0 chr6 118322485 118322537 -31194500 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1487 431 305 51 19 chr6 118323926 118324083 -31192954 - RSINE1 SINE B4 0 165 4 4 1487 519 17 0 0 chr6 118325123 118325183 -31191854 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1487 971 174 120 38 chr6 118326722 118326931 -31190106 + URR1A DNA MER1_type 1 226 0 4 1487 191 266 0 112 chr6 118326987 118327076 -31189961 + MIR3 SINE MIR 81 159 -49 4 1487 1037 141 0 6 chr6 118327123 118327302 -31189735 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 4 1487 236 256 88 11 chr6 118328010 118328101 -31188936 + RLTR9C LTR ERVK 6 103 -290 4 1487 310 91 18 18 chr6 118328717 118328773 -31188264 + (TCCC)n Simple_repeat Simple_repeat 4 59 0 4 1487 2078 204 18 10 chr6 118328808 118329209 -31187828 - MTD LTR MaLR -15 404 1 4 1487 1409 204 134 26 chr6 118330580 118330922 -31186115 + MTD LTR MaLR 1 379 -40 4 1487 1843 168 66 11 chr6 118331468 118331808 -31185229 + ORR1B2 LTR MaLR 1 369 -10 4 1487 349 254 187 1 chr6 118332000 118332127 -31184910 + MTEa LTR MaLR 225 372 -7 4 1487 900 249 104 21 chr6 118332130 118332417 -31184620 - ERVL-int LTR ERVL -3540 2217 1907 4 1487 325 300 90 0 chr6 118332425 118332525 -31184512 + MLT1A0 LTR MaLR 3 111 -254 4 1487 731 265 63 5 chr6 118333055 118333260 -31183777 - MTE-int LTR MaLR -252 1328 1112 4 1487 398 311 103 3 chr6 118335147 118335371 -31181666 + ORR1E LTR MaLR 98 369 -10 4 1487 228 257 14 14 chr6 118335631 118335702 -31181335 + L1M4 LINE L1 2212 2282 -3864 4 1487 479 192 269 0 chr6 118336082 118336212 -31180825 + B3 SINE B2 1 165 -51 4 1487 849 255 180 63 chr6 118336300 118336727 -31180310 + L1_Rod LINE L1 5067 5544 -333 4 1487 4830 75 25 16 chr6 118336727 118337404 -31179633 + Lx3_Mus LINE L1 6319 7001 -8 4 1487 849 245 182 66 chr6 118337404 118337537 -31179500 + L1_Rod LINE L1 5535 5668 -179 4 1487 339 259 106 49 chr6 118337748 118337941 -31179096 - MTE2b LTR MaLR -98 281 75 4 1487 210 261 174 0 chr6 118339638 118339707 -31177330 - BC1_Mm scRNA scRNA -65 87 7 4 1487 21 36 0 0 chr6 118340860 118340888 -31176149 + AT_rich Low_complexity Low_complexity 1 28 0 4 1487 250 207 146 0 chr6 118341495 118341577 -31175460 - ID_B1 SINE B4 -10 214 121 4 1487 449 241 35 9 chr6 118342031 118342144 -31174893 + PB1D10 SINE Alu 1 116 -1 4 1487 297 0 0 0 chr6 118343397 118343430 -31173607 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1487 266 304 26 0 chr6 118343478 118343572 -31173465 - PB1D10 SINE Alu -20 100 2 4 1487 260 137 130 50 chr6 118344342 118344442 -31172595 + L2 LINE L2 2799 2906 -513 4 1487 1160 41 7 27 chr6 118347390 118347540 -31169497 + B1_Mus2 SINE Alu 1 147 0 4 1487 183 42 0 0 chr6 118347540 118347564 -31169473 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1487 24 32 0 0 chr6 118347624 118347655 -31169382 + AT_rich Low_complexity Low_complexity 1 31 0 4 1487 234 304 0 0 chr6 118347709 118347778 -31169259 + RSINE1 SINE B4 5 73 -92 4 1487 320 239 118 152 chr6 118347826 118348063 -31168974 + B4 SINE B4 64 292 0 4 1487 378 229 212 0 chr6 118348276 118348394 -31168643 + B1F1 SINE Alu 1 143 -6 4 1487 424 288 136 4 chr6 118348542 118348793 -31168244 + L1M4 LINE L1 5262 5545 -629 5 1487 249 130 22 0 chr6 118349030 118349076 -31167961 + Lx8 LINE L1 7423 7469 -4 5 1487 1431 209 89 0 chr6 118349242 118349558 -31167479 + MTD LTR MaLR 1 344 -75 5 1487 251 94 85 102 chr6 118349850 118349909 -31167128 + MTD LTR MaLR 352 409 -10 5 1487 3143 221 79 82 chr6 118350380 118351905 -31165132 + L1_Rod LINE L1 917 2433 -3414 5 1487 1783 235 59 50 chr6 118351921 118352203 -31164834 + L1_Rod LINE L1 3978 4272 -1575 5 1487 1521 48 0 16 chr6 118352203 118352394 -31164643 + B2_Mm1a SINE B2 2 189 -4 5 1487 1783 235 59 50 chr6 118352394 118352774 -31164263 + L1_Rod LINE L1 4273 4646 -1201 5 1487 310 252 39 134 chr6 118353915 118354094 -31162943 + RSINE1 SINE B4 4 165 0 5 1487 264 206 60 80 chr6 118355433 118355533 -31161504 + B1F SINE Alu 40 137 -12 5 1487 26 0 0 0 chr6 118355823 118355849 -31161188 + GC_rich Low_complexity Low_complexity 1 26 0 5 1487 3822 71 0 0 chr6 118355849 118356327 -31160710 + L1_Mus1 LINE L1 6090 6567 0 5 1487 353 267 150 41 chr6 118356415 118356681 -31160356 + L1MC4 LINE L1 6837 7131 -911 5 1487 322 213 0 0 chr6 118356761 118356822 -31160215 + B3 SINE B2 2 62 -154 5 1487 21 71 0 0 chr6 118356948 118356990 -31160047 + AT_rich Low_complexity Low_complexity 1 42 0 5 1487 541 318 25 10 chr6 118356992 118357192 -31159845 - B3 SINE B2 -12 204 2 5 1487 27 49 0 0 chr6 118357783 118357824 -31159213 + AT_rich Low_complexity Low_complexity 1 41 0 5 1487 438 282 18 9 chr6 118357830 118357941 -31159096 + RSINE1 SINE B4 3 114 -51 5 1487 243 0 0 0 chr6 118357970 118357997 -31159040 + (CATA)n Simple_repeat Simple_repeat 2 28 0 5 1488 509 288 38 55 chr6 118358252 118358458 -31158579 + B3A SINE B2 9 209 -7 5 1488 748 243 115 9 chr6 118358653 118358906 -31158131 + Lx8 LINE L1 6914 7221 -252 5 1488 737 247 15 20 chr6 118358920 118359118 -31157919 - B3 SINE B2 0 216 20 5 1488 1673 16 16 0 chr6 118359463 118359652 -31157385 - B2_Mm1a SINE B2 -1 192 1 5 1488 312 27 0 0 chr6 118359817 118359854 -31157183 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1488 4525 236 57 26 chr6 118359867 118361107 -31155930 + Lx9 LINE L1 6342 7619 -25 5 1488 671 101 18 0 chr6 118362743 118362852 -31154185 + B1_Mur3 SINE Alu 39 149 0 5 1488 28 0 0 0 chr6 118364186 118364214 -31152823 + AT_rich Low_complexity Low_complexity 1 28 0 5 1488 1019 191 21 0 chr6 118364237 118364426 -31152611 + B3 SINE B2 8 200 -16 5 1488 216 0 0 0 chr6 118364426 118364450 -31152587 + (TAAAA)n Simple_repeat Simple_repeat 5 28 0 5 1488 1144 205 89 11 chr6 118364663 118364934 -31152103 + Lx8 LINE L1 6517 6808 -665 5 1488 395 192 39 39 chr6 118364934 118365037 -31152000 + B1F2 SINE Alu 40 142 -7 5 1488 188 35 35 0 chr6 118365051 118365080 -31151957 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1488 559 252 126 39 chr6 118365084 118365315 -31151722 + Lx8 LINE L1 6813 7063 -410 5 1488 277 324 17 67 chr6 118365450 118365569 -31151468 + MT2B LTR ERVL 145 257 -344 5 1488 690 198 8 0 chr6 118365478 118365604 -31151433 + B1_Mm SINE Alu 11 137 -10 5 1488 240 35 0 0 chr6 118365604 118365633 -31151404 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1488 716 145 30 15 chr6 118365828 118365961 -31151076 + B1_Mus2 SINE Alu 13 147 0 5 1488 210 290 133 30 chr6 118365995 118366130 -31150907 + MIRb SINE MIR 110 258 -10 5 1488 250 254 0 15 chr6 118366185 118366253 -31150784 + (TATG)n Simple_repeat Simple_repeat 2 68 0 5 1488 478 124 184 37 chr6 118366967 118367076 -31149961 + B1_Mur2 SINE Alu 24 148 -1 5 1488 198 268 92 11 chr6 118367931 118368018 -31149019 + MIRb SINE MIR 118 211 -57 5 1488 233 98 0 24 chr6 118368185 118368227 -31148810 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 5 1488 334 247 0 49 chr6 118370086 118370188 -31146849 - RMER5 LTR ERV1 -22 512 416 5 1488 655 291 41 37 chr6 118370687 118370930 -31146107 - MTD LTR MaLR -159 260 17 5 1488 463 214 30 10 chr6 118371461 118371560 -31145477 - B1_Mus2 SINE Alu -9 138 38 5 1488 6450 138 40 25 chr6 118371563 118372878 -31144159 + ORR1A3-int LTR MaLR 471 1863 -100 5 1488 1917 90 17 3 chr6 118372882 118373172 -31143865 + ORR1A2-int LTR MaLR 1670 1963 0 5 1488 2221 107 0 0 chr6 118373172 118373491 -31143546 + ORR1A2 LTR MaLR 1 319 -8 5 1488 557 209 37 92 chr6 118373653 118373816 -31143221 + B4 SINE B4 68 221 -71 5 1488 1074 35 7 0 chr6 118373680 118373821 -31143216 + B1_Mus2 SINE Alu 6 147 0 5 1488 258 57 0 54 chr6 118373822 118373878 -31143159 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 5 1488 275 350 72 40 chr6 118373881 118374104 -31142933 - ORR1E LTR MaLR -57 302 73 5 1488 1793 236 72 47 chr6 118374108 118374749 -31142288 - L1_Rod LINE L1 -807 5040 4384 5 1488 1683 254 64 23 chr6 118374750 118374836 -31142201 - RLTR20C LTR ERVK 0 534 431 5 1488 366 23 0 0 chr6 118374836 118374879 -31142158 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1488 1683 254 64 23 chr6 118374879 118375305 -31141732 - RLTR20C LTR ERVK -104 430 1 5 1488 539 240 159 25 chr6 118375315 118375373 -31141664 - L1_Rod LINE L1 -1458 4389 4314 5 1488 537 44 0 0 chr6 118375373 118375441 -31141596 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 1488 1987 235 193 34 chr6 118375441 118376339 -31140698 - L1_Rod LINE L1 -1534 4313 3284 5 1488 1136 54 0 26 chr6 118376452 118376603 -31140434 + B1_Mus1 SINE Alu 1 147 -1 5 1488 180 0 0 0 chr6 118376604 118376624 -31140413 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1488 575 92 11 0 chr6 118377599 118377686 -31139351 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 1488 366 314 163 54 chr6 118377920 118378004 -31139033 - MER63D DNA AcHobo -671 390 299 5 1488 459 0 0 0 chr6 118378004 118378055 -31138982 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1488 366 314 163 54 chr6 118378055 118378320 -31138717 - MER63D DNA AcHobo -763 298 3 5 1488 512 247 31 19 chr6 118379003 118379299 -31137738 - MMSAT4 Satellite Satellite -15 299 1 5 1488 236 263 26 13 chr6 118379232 118379309 -31137728 - MurSatRep1 Unknown Unknown -338 1799 1722 5 1488 270 319 11 11 chr6 118379329 118379544 -31137493 - MMSAT4 Satellite Satellite -5 215 1 5 1488 246 174 0 0 chr6 118380987 118381033 -31136004 + T-rich Low_complexity Low_complexity 1 46 0 5 1488 1049 80 0 7 chr6 118381033 118381184 -31135853 - B2_Mm1a SINE B2 -42 151 2 5 1488 827 149 220 17 chr6 118381379 118381556 -31135481 - B3 SINE B2 0 216 4 5 1488 2110 140 80 0 chr6 118382464 118382814 -31134223 + ORR1C1 LTR MaLR 1 378 0 5 1488 180 0 0 0 chr6 118383019 118383039 -31133998 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1488 198 0 0 0 chr6 118383083 118383105 -31133932 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1488 246 128 0 0 chr6 118383104 118383143 -31133894 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 5 1488 491 273 39 0 chr6 118383303 118383431 -31133606 - MurSatRep1 Unknown Unknown -1374 763 631 5 1488 288 0 0 0 chr6 118384388 118384420 -31132617 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1488 1985 282 57 24 chr6 118384439 118384563 -31132474 - L1_Mur3 LINE L1 -2954 2926 2809 5 1488 1775 189 102 8 chr6 118384563 118384946 -31132091 - MTC LTR MaLR 0 421 3 5 1488 1985 282 57 24 chr6 118384946 118385597 -31131440 - L1_Mur3 LINE L1 -3072 2808 2124 5 1488 3395 30 8 0 chr6 118385597 118385990 -31131047 - MTA_Mm LTR MaLR 0 396 1 5 1488 1985 282 57 24 chr6 118385990 118386035 -31131002 - L1_Mur3 LINE L1 -3757 2123 2079 5 1488 4603 78 3 21 chr6 118386080 118386738 -31130299 - MusHAL1 LINE L1 0 2712 2067 5 1488 884 81 0 69 chr6 118386736 118386896 -31130141 + MusHAL1 LINE L1 1920 2068 -644 5 1488 523 313 117 50 chr6 118386895 118387658 -31129379 - L1_Mur3 LINE L1 -3822 2058 1245 5 1488 1656 159 140 14 chr6 118387847 118388203 -31128834 + MTC LTR MaLR 13 413 -8 5 1488 979 264 75 33 chr6 118388878 118389117 -31127920 + L1MA6 LINE L1 5199 5485 -815 5 1488 1245 34 0 0 chr6 118389117 118389263 -31127774 + B1_Mus2 SINE Alu 2 147 0 5 1488 979 292 93 79 chr6 118389263 118389743 -31127294 + L1MA6 LINE L1 5486 5931 -369 5 1488 379 277 27 54 chr6 118390000 118390149 -31126888 - RSINE1 SINE B4 -19 146 2 5 1488 929 26 0 0 chr6 118390248 118390363 -31126674 - B1_Mm SINE Alu -9 138 24 5 1488 850 326 41 12 chr6 118390364 118390705 -31126332 + Lx8 LINE L1 6243 6593 -880 5 1488 5431 162 38 97 chr6 118390707 118391220 -31125817 - RMER12 LTR ERVK -1 1321 892 5 1488 384 59 0 0 chr6 118391220 118391271 -31125766 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1488 5431 162 38 97 chr6 118391271 118392161 -31124876 - RMER12 LTR ERVK -431 891 1 5 1488 1572 289 72 78 chr6 118392227 118392536 -31124501 + Lx8 LINE L1 6687 6966 -507 5 1488 980 184 97 5 chr6 118392536 118392743 -31124294 - URR1A DNA MER1_type 0 226 1 5 1488 1572 289 72 78 chr6 118392743 118393164 -31123873 + Lx8 LINE L1 6967 7413 -60 5 1488 503 277 166 79 chr6 118393240 118393632 -31123405 + L1MA5A LINE L1 3081 3530 -2613 5 1488 1043 108 0 0 chr6 118393632 118393771 -31123266 - B1_Mus1 SINE Alu -8 140 2 5 1488 503 277 166 79 chr6 118393771 118393950 -31123087 + L1MA5A LINE L1 3531 3702 -2441 5 1488 674 179 166 6 chr6 118393960 118394129 -31122908 - ORR1B1 LTR MaLR -198 196 1 5 1488 807 309 42 68 chr6 118394138 118394753 -31122284 + L1MA5A LINE L1 4426 5024 -1119 5 1488 316 235 65 22 chr6 118394760 118394899 -31122138 + L1_Rod LINE L1 5080 5224 -623 5 1488 22 0 0 0 chr6 118394928 118394950 -31122087 + AT_rich Low_complexity Low_complexity 1 22 0 5 1488 260 190 17 0 chr6 118394952 118395010 -31122027 + L1MA5A LINE L1 5597 5655 -636 5 1488 1307 247 92 16 chr6 118395013 118395384 -31121653 + MTD LTR MaLR 1 399 -20 5 1488 507 307 46 8 chr6 118395401 118395620 -31121417 + L1MA5A LINE L1 5635 5861 -19 5 1488 282 53 0 0 chr6 118396212 118396245 -31120792 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1488 513 84 0 0 chr6 118396245 118396316 -31120721 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1488 17407 140 5 6 chr6 118396321 118397085 -31119952 + Lx2 LINE L1 3059 3829 -2048 5 1488 3549 25 0 0 chr6 118397085 118397481 -31119556 - MTA_Mm LTR MaLR 0 396 1 5 1488 9576 24 4 2 chr6 118397481 118398577 -31118460 - MTA_Mm-int LTR MaLR 0 1098 1 5 1488 3574 23 0 0 chr6 118398577 118398973 -31118064 - MTA_Mm LTR MaLR 0 396 1 5 1488 17407 132 7 10 chr6 118398973 118401313 -31115724 + Lx2 LINE L1 3830 6166 -831 5 1488 809 120 82 15 chr6 118401628 118401763 -31115274 - B1_Mur3 SINE Alu -5 144 1 5 1488 205 219 27 0 chr6 118401836 118401909 -31115128 + GA-rich Low_complexity Low_complexity 3 77 0 5 1488 182 224 50 50 chr6 118402009 118402089 -31114948 + MER5A DNA MER1_type 11 90 -99 5 1488 304 270 80 0 chr6 118402125 118402225 -31114812 + PB1D10 SINE Alu 3 110 -7 5 1488 265 274 12 23 chr6 118402296 118402382 -31114655 + GA-rich Low_complexity Low_complexity 5 89 0 5 1488 294 247 0 0 chr6 118402976 118403069 -31113968 + (TG)n Simple_repeat Simple_repeat 1 93 0 5 1488 277 104 188 36 chr6 118403154 118403250 -31113787 + Lx7 LINE L1 7615 7687 -9 5 1488 276 130 0 0 chr6 118404932 118404978 -31112059 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1488 1394 241 58 39 chr6 118405891 118406305 -31110732 - Lx9 LINE L1 -366 7278 6857 5 1488 315 0 0 0 chr6 118406370 118406405 -31110632 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1488 477 0 0 0 chr6 118406405 118406457 -31110580 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1488 314 217 11 67 chr6 118406459 118406548 -31110489 + Lx9 LINE L1 7357 7440 -204 6 1488 423 0 0 0 chr6 118406570 118406617 -31110420 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1488 227 319 34 34 chr6 118407050 118407199 -31109838 - L1MC4a LINE L1 -170 7825 7677 6 1488 272 282 83 51 chr6 118407324 118407481 -31109556 - L1ME1 LINE L1 -177 6002 5841 6 1488 486 286 114 10 chr6 118407518 118407719 -31109318 - L1MC4a LINE L1 -864 7018 6797 6 1488 2381 146 42 18 chr6 118408779 118409164 -31107873 + ORR1B1 LTR MaLR 1 394 0 6 1488 204 40 0 0 chr6 118409920 118409945 -31107092 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 1488 271 192 0 0 chr6 118409946 118409998 -31107039 - B1_Mur1 SINE Alu -13 136 85 6 1488 257 128 21 0 chr6 118410006 118410053 -31106984 + (TCTG)n Simple_repeat Simple_repeat 4 51 0 6 1488 287 188 31 0 chr6 118410064 118410128 -31106909 - B3 SINE B2 -6 210 145 6 1488 527 204 0 46 chr6 118410128 118410236 -31106801 - Lx8 LINE L1 -155 7318 7216 6 1488 25 31 0 0 chr6 118410540 118410572 -31106465 + AT_rich Low_complexity Low_complexity 1 32 0 6 1488 257 328 31 63 chr6 118411233 118411360 -31105677 - Tigger5 DNA MER2_type -2258 148 26 6 1488 1526 33 16 16 chr6 118411458 118411645 -31105392 - B2_Mm2 SINE B2 -8 187 1 6 1488 353 270 48 68 chr6 118411675 118411822 -31105215 + RSINE1 SINE B4 3 146 -19 6 1488 305 294 103 44 chr6 118412297 118412500 -31104537 - Cheshire DNA MER1_type -2155 265 51 6 1488 344 299 89 0 chr6 118412691 118412848 -31104189 - MIR SINE MIR 0 262 92 6 1488 198 0 0 0 chr6 118413358 118413380 -31103657 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1488 1587 41 0 35 chr6 118413434 118413636 -31103401 - B2_Mm2 SINE B2 0 195 1 6 1488 452 283 9 10 chr6 118414429 118414982 -31102055 - MMSAT4 Satellite Satellite -5 552 1 6 1488 337 276 31 31 chr6 118415096 118415296 -31101741 - MMSAT4 Satellite Satellite 0 200 1 6 1488 337 310 8 8 chr6 118416088 118416205 -31100832 + MTD LTR MaLR 84 200 -179 6 1488 387 0 0 0 chr6 118416230 118416273 -31100764 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1488 280 192 455 19 chr6 118416273 118416372 -31100665 + B3 SINE B2 72 214 -2 6 1488 785 40 0 10 chr6 118416546 118416648 -31100389 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 6 1488 1107 67 0 0 chr6 118416650 118416784 -31100253 - B1_Mus2 SINE Alu -13 134 1 6 1488 684 36 0 0 chr6 118416988 118417071 -31099966 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 1488 342 296 32 8 chr6 118417239 118417365 -31099672 - MurSatRep1 Unknown Unknown -1378 759 631 6 1488 280 246 15 0 chr6 118417438 118417503 -31099534 + ID4 SINE ID 8 73 -10 6 1488 215 304 0 35 chr6 118417757 118417873 -31099164 + T-rich Low_complexity Low_complexity 2 113 0 6 1488 216 0 0 0 chr6 118418174 118418198 -31098839 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1488 1318 226 50 15 chr6 118418198 118418539 -31098498 + ORR1D2 LTR MaLR 15 367 -3 6 1488 349 206 14 14 chr6 118418557 118418626 -31098411 - B4A SINE B4 -216 76 8 6 1488 1087 195 8 17 chr6 118418766 118419006 -31098031 + MTD LTR MaLR 168 405 -14 6 1488 430 306 103 32 chr6 118419796 118420116 -31096921 + L1MD LINE L1 3978 4345 -1801 6 1488 1367 205 216 38 chr6 118420260 118420405 -31096632 - MTE-int LTR MaLR -84 1496 1348 6 1488 697 136 88 29 chr6 118420405 118420541 -31096496 + B1_Mur4 SINE Alu 1 144 -6 6 1488 1367 205 216 38 chr6 118420541 118420821 -31096216 - MTE-int LTR MaLR -233 1347 995 6 1488 575 316 123 36 chr6 118420869 118421339 -31095698 - L1MC3 LINE L1 -508 7277 6767 6 1488 305 287 39 47 chr6 118421478 118421606 -31095431 + L1M3 LINE L1 5474 5600 -580 6 1488 364 246 88 0 chr6 118421617 118421731 -31095306 + RMER15 LTR ERVL 452 575 0 6 1488 3658 259 59 7 chr6 118421736 118422845 -31094192 + L1_Mur3 LINE L1 4183 5348 -532 6 1488 528 181 82 123 chr6 118422845 118423040 -31093997 - B2_Mm2 SINE B2 -7 188 2 6 1488 878 208 28 28 chr6 118423040 118423253 -31093784 + L1_Mur3 LINE L1 5341 5553 -327 6 1488 1973 76 3 65 chr6 118423254 118423562 -31093475 + ORR1A2 LTR MaLR 1 289 -38 6 1488 426 55 0 0 chr6 118424431 118424486 -31092551 + ORR1A2 LTR MaLR 272 326 0 6 1488 458 296 96 0 chr6 118424498 118424633 -31092404 + L1_Rod LINE L1 5532 5679 -168 6 1488 1732 279 122 26 chr6 118424638 118425452 -31091585 + Lx8 LINE L1 6578 7469 -4 6 1488 418 104 0 82 chr6 118425602 118425675 -31091362 - B1_Mur4 SINE Alu -83 67 1 6 1488 21 0 0 0 chr6 118425676 118425697 -31091340 + AT_rich Low_complexity Low_complexity 1 21 0 6 1488 613 139 19 19 chr6 118425701 118425804 -31091233 + PB1D9 SINE Alu 3 105 -15 6 1488 710 236 48 32 chr6 118425805 118426055 -31090982 - Charlie1a DNA MER1_type -924 531 278 6 1488 1402 136 51 0 chr6 118426330 118426544 -31090493 + URR1B DNA MER1_type 1 225 0 6 1488 274 270 0 0 chr6 118426907 118426970 -31090067 - Charlie1a DNA MER1_type -1392 63 1 6 1488 1125 199 0 14 chr6 118427032 118427251 -31089786 - B3 SINE B2 0 216 1 6 1488 463 336 21 0 chr6 118428210 118428353 -31088684 + B1_Mur1 SINE Alu 1 146 -3 6 1488 363 258 0 10 chr6 118428606 118428704 -31088333 + PB1D10 SINE Alu 2 98 -19 6 1488 345 47 0 0 chr6 118429360 118429403 -31087634 + (TCCCC)n Simple_repeat Simple_repeat 3 45 0 6 1488 220 254 0 15 chr6 118429406 118429474 -31087563 + (CCCG)n Simple_repeat Simple_repeat 3 69 0 6 1488 816 289 63 118 chr6 118430319 118430462 -31086575 - RMER5 LTR ERV1 0 534 390 6 1488 742 208 69 34 chr6 118430462 118430666 -31086371 - B3 SINE B2 -5 211 1 6 1488 816 289 63 118 chr6 118430666 118430940 -31086097 - RMER5 LTR ERV1 -145 389 137 6 1488 432 0 0 0 chr6 118430940 118430988 -31086049 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1488 816 289 63 118 chr6 118430988 118431111 -31085926 - RMER5 LTR ERV1 -398 136 23 6 1488 980 217 44 5 chr6 118431980 118432184 -31084853 + B3 SINE B2 2 213 -3 6 1488 227 259 0 0 chr6 118433318 118433376 -31083661 - L1M1 LINE L1 -371 5929 5872 6 1488 528 302 129 38 chr6 118433478 118433926 -31083111 - L1_Rod LINE L1 -321 5526 5038 6 1488 582 150 0 0 chr6 118433926 118434026 -31083011 + B1_Mus1 SINE Alu 33 132 -16 6 1488 729 23 0 0 chr6 118434030 118434117 -31082920 + (CAAAC)n Simple_repeat Simple_repeat 3 89 0 6 1488 348 232 0 43 chr6 118434117 118434129 -31082908 + ID_B1 SINE B4 213 224 0 6 1488 290 240 91 55 chr6 118434135 118434245 -31082792 + L1_Mur3 LINE L1 4139 4252 -1628 6 1488 488 283 0 30 chr6 118434213 118434410 -31082627 - L1M3 LINE L1 -2064 4076 3886 6 1488 997 59 7 0 chr6 118434415 118434551 -31082486 - B2_Mm2 SINE B2 -58 137 1 6 1488 30 27 0 0 chr6 118434715 118434752 -31082285 + AT_rich Low_complexity Low_complexity 1 37 0 6 1488 407 331 8 0 chr6 118434761 118434885 -31082152 + ID_B1 SINE B4 92 216 -8 6 1488 944 115 64 7 chr6 118435651 118435791 -31081246 + B1_Mur3 SINE Alu 1 148 -1 6 1488 1655 42 0 0 chr6 118435851 118436041 -31080996 - B2_Mm1a SINE B2 -2 191 2 6 1488 241 93 0 44 chr6 118436086 118436131 -31080906 + B1_Mur4 SINE Alu 107 149 -1 6 1488 262 283 43 43 chr6 118437634 118437839 -31079198 + MMSAT4 Satellite Satellite 1 205 0 6 1488 321 253 61 40 chr6 118437873 118438073 -31078964 + MMSAT4 Satellite Satellite 1 204 -4 6 1488 1721 137 19 9 chr6 118438535 118438942 -31078095 - RMER19A LTR ERVK 0 737 288 6 1488 4505 12 2 0 chr6 118438942 118439434 -31077603 + MT2_Mm LTR ERVL 1 493 0 6 1488 40950 16 14 0 chr6 118439434 118444721 -31072316 + MERVL-int LTR ERVL 1 5360 -125 6 1488 387 167 46 35 chr6 118444721 118444808 -31072229 + ORR1A3-int LTR MaLR 553 640 -1323 6 1488 322 0 0 0 chr6 118444808 118444846 -31072191 + MERVL-int LTR ERVL 5448 5485 0 6 1488 4712 12 2 0 chr6 118444846 118445338 -31071699 + MT2_Mm LTR ERVL 1 493 0 6 1488 2029 98 21 3 chr6 118445338 118445625 -31071412 - RMER19A LTR ERVK -445 292 1 6 1488 636 285 32 50 chr6 118445820 118446101 -31070936 + L1MC LINE L1 3378 3653 -2493 6 1488 1163 177 60 44 chr6 118446149 118446397 -31070640 - RLTR22_Mur LTR ERVK -4 1844 1593 6 1488 5797 74 6 6 chr6 118446589 118447391 -31069646 - RLTR22_Mur LTR ERVK -1043 805 4 6 1488 678 243 78 90 chr6 118447393 118447728 -31069309 + L1MC LINE L1 3708 4038 -2108 6 1488 333 0 0 0 chr6 118447744 118447781 -31069256 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1488 225 0 0 0 chr6 118447781 118447805 -31069232 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1488 672 230 27 0 chr6 118447816 118447964 -31069073 - B3A SINE B2 -46 152 1 6 1488 439 274 43 0 chr6 118449049 118449166 -31067871 + B4A SINE B4 2 123 -169 6 1488 778 149 93 0 chr6 118449176 118449337 -31067700 - MTD LTR MaLR -13 406 231 6 1488 1579 289 140 24 chr6 118449337 118450572 -31066465 + Lx7 LINE L1 5341 6734 -962 6 1488 375 259 149 11 chr6 118450573 118450855 -31066182 + Lx7 LINE L1 6831 7165 -531 6 1488 390 241 182 24 chr6 118450861 118451031 -31066006 + L1MC4 LINE L1 7682 7878 -164 6 1488 1105 45 11 33 chr6 118451041 118451224 -31065813 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1488 300 208 73 36 chr6 118451230 118451340 -31065697 + Lx7 LINE L1 7353 7466 -7 6 1488 29 0 0 0 chr6 118451340 118451369 -31065668 + AT_rich Low_complexity Low_complexity 1 29 0 6 1488 583 273 135 6 chr6 118451403 118451788 -31065249 + L1MC4a LINE L1 7206 7622 -420 6 1488 24 32 0 0 chr6 118452523 118452554 -31064483 + AT_rich Low_complexity Low_complexity 1 31 0 6 1488 905 187 53 27 chr6 118452569 118452756 -31064281 - B2_Mm2 SINE B2 -2 193 2 6 1488 509 204 23 0 chr6 118452846 118452934 -31064103 - PB1D9 SINE Alu -28 92 3 6 1488 237 33 0 0 chr6 118453188 118453218 -31063819 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1488 940 289 113 23 chr6 118453485 118454042 -31062995 + L1_Rod LINE L1 4697 5327 -553 6 1488 1421 294 109 16 chr6 118454233 118454967 -31062070 + Lx8 LINE L1 6193 6994 -479 6 1488 755 207 137 42 chr6 118455091 118455303 -31061734 + MTD LTR MaLR 188 419 0 6 1488 241 298 160 41 chr6 118455303 118455572 -31061465 + Lx8 LINE L1 7171 7471 -2 6 1488 22 0 0 0 chr6 118455684 118455706 -31061331 + AT_rich Low_complexity Low_complexity 1 22 0 6 1488 432 0 0 0 chr6 118455869 118455917 -31061120 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 6 1488 307 57 359 0 chr6 118455919 118455972 -31061065 - BC1_Mm scRNA scRNA -76 76 5 6 1488 243 0 0 0 chr6 118457353 118457380 -31059657 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 6 1488 239 310 14 0 chr6 118458026 118458097 -31058940 - ID4 SINE ID -10 73 2 6 1488 978 177 0 0 chr6 118458941 118459088 -31057949 - B1_Mus2 SINE Alu 0 147 1 7 1488 239 128 20 78 chr6 118459230 118459281 -31057756 + B1_Mus1 SINE Alu 13 60 -88 7 1488 253 237 17 0 chr6 118459298 118459357 -31057680 + RLTR25B LTR ERVK 430 489 -539 7 1488 328 179 238 0 chr6 118459312 118459396 -31057641 + B1_Mm SINE Alu 43 146 -1 7 1488 516 194 20 0 chr6 118459615 118459713 -31057324 + PB1D10 SINE Alu 1 100 -17 7 1488 561 55 0 0 chr6 118459714 118459787 -31057250 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 7 1488 796 256 139 41 chr6 118460394 118460932 -31056105 + L1M4 LINE L1 5006 5590 -588 7 1488 386 158 122 56 chr6 118461812 118461919 -31055118 + PB1D9 SINE Alu 5 118 -2 7 1488 3668 44 46 16 chr6 118462106 118462545 -31054492 + L1Md_F2 LINE L1 6129 6580 -2 7 1488 1135 54 54 0 chr6 118463067 118463216 -31053821 + B2_Mm2 SINE B2 2 158 -37 7 1488 186 43 0 0 chr6 118463217 118463240 -31053797 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1488 696 35 0 0 chr6 118463245 118463332 -31053705 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 7 1488 1295 223 165 0 chr6 118463363 118463691 -31053346 + Lx6 LINE L1 7064 7445 -15 7 1488 1141 303 21 0 chr6 118463770 118464097 -31052940 + MER2 DNA MER2_type 1 334 -11 7 1488 1050 85 47 0 chr6 118464978 118465107 -31051930 + B1_Mus2 SINE Alu 1 135 -12 7 1488 613 52 10 20 chr6 118465107 118465206 -31051831 + (CAAAA)n Simple_repeat Simple_repeat 3 100 0 7 1488 248 0 0 30 chr6 118465283 118465316 -31051721 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1488 1195 63 0 7 chr6 118465316 118465453 -31051584 - B1_Mus2 SINE Alu -10 137 1 7 1488 282 259 0 0 chr6 118466022 118466138 -31050899 + (TG)n Simple_repeat Simple_repeat 1 116 0 7 1488 576 247 72 20 chr6 118466148 118466301 -31050736 - RSINE1 SINE B4 0 165 5 7 1488 455 224 20 10 chr6 118466356 118466455 -31050582 - B1F SINE Alu -36 113 14 7 1488 582 246 72 0 chr6 118466602 118466740 -31050297 + RSINE1 SINE B4 1 148 -17 7 1488 884 162 47 40 chr6 118466782 118466930 -31050107 + B1_Mur2 SINE Alu 1 149 0 7 1488 234 0 0 0 chr6 118467139 118467165 -31049872 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1488 43 20 0 0 chr6 118468008 118468058 -31048979 + AT_rich Low_complexity Low_complexity 1 50 0 7 1488 299 230 88 44 chr6 118468561 118468652 -31048385 + MER58B DNA MER1_type 247 341 0 7 1488 621 0 0 0 chr6 118468792 118468861 -31048176 + (TC)n Simple_repeat Simple_repeat 1 69 0 7 1488 396 331 64 12 chr6 118469056 118469227 -31047810 + MIR SINE MIR 35 214 -48 7 1488 925 256 59 0 chr6 118469826 118470029 -31047008 + ID_B1 SINE B4 8 222 -2 7 1488 442 273 41 20 chr6 118470795 118470941 -31046096 + B1F SINE Alu 1 149 0 7 1488 239 208 41 20 chr6 118471207 118471256 -31045781 - PB1D7 SINE Alu -70 50 1 7 1488 340 281 40 67 chr6 118471525 118471674 -31045363 + RSINE1 SINE B4 2 146 -19 7 1488 668 248 214 15 chr6 118472225 118472557 -31044480 - L1MA6 LINE L1 -17 6283 5886 7 1488 966 224 56 0 chr6 118472713 118472909 -31044128 + B3 SINE B2 1 207 -9 7 1488 1328 95 73 0 chr6 118474489 118474650 -31042387 + B2_Mm2 SINE B2 2 162 -33 7 1488 315 0 0 0 chr6 118474650 118474685 -31042352 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1488 1328 95 73 0 chr6 118474685 118474702 -31042335 + B2_Mm2 SINE B2 163 191 -4 7 1488 861 219 62 10 chr6 118476212 118476406 -31040631 + B3 SINE B2 7 210 -6 7 1488 1319 123 37 21 chr6 118476516 118476707 -31040330 + B2_Mm2 SINE B2 1 194 -1 7 1488 1008 275 158 38 chr6 118476844 118477452 -31039585 + L1_Mur3 LINE L1 3232 3912 -1968 7 1488 464 246 54 34 chr6 118477467 118477614 -31039423 + RSINE1 SINE B4 4 153 -12 7 1488 725 299 191 31 chr6 118478194 118478680 -31038357 + L1MEc LINE L1 40 603 -5797 7 1488 243 276 40 20 chr6 118478749 118478849 -31038188 + L1MD LINE L1 5388 5489 -870 7 1488 579 78 0 0 chr6 118478864 118478954 -31038083 + (CA)n Simple_repeat Simple_repeat 2 91 0 7 1488 1290 27 0 13 chr6 118479966 118480115 -31036922 + B1_Mus2 SINE Alu 1 147 0 7 1488 411 278 96 14 chr6 118480316 118480462 -31036575 - ID_B1 SINE B4 -62 162 5 7 1488 563 267 17 64 chr6 118480580 118480752 -31036285 - RSINE1 SINE B4 0 165 2 7 1488 390 292 132 34 chr6 118480830 118480984 -31036053 - B1F1 SINE Alu 0 147 3 7 1488 263 265 103 46 chr6 118480915 118481002 -31036035 - MT2B2 LTR ERVL -340 244 153 7 1488 731 147 19 81 chr6 118481038 118481195 -31035842 - B2_Mm2 SINE B2 -57 159 1 7 1488 223 306 52 85 chr6 118481259 118481407 -31035630 - MIRb SINE MIR -28 240 98 7 1488 2310 81 91 0 chr6 118481407 118481703 -31035334 - ORR1A2 LTR MaLR 0 327 5 7 1488 223 306 52 85 chr6 118481703 118481765 -31035272 - MIRb SINE MIR -171 97 38 7 1488 192 77 0 0 chr6 118481896 118481922 -31035115 + (TTG)n Simple_repeat Simple_repeat 2 27 0 7 1488 547 142 230 0 chr6 118481922 118482035 -31035002 - B1_Mur3 SINE Alu -10 139 1 7 1488 495 192 57 16 chr6 118482474 118482598 -31034439 - ORR1C2 LTR MaLR -178 206 76 7 1488 21 0 0 0 chr6 118482784 118482805 -31034232 + AT_rich Low_complexity Low_complexity 1 21 0 7 1488 29 0 0 0 chr6 118482819 118482848 -31034189 + AT_rich Low_complexity Low_complexity 1 29 0 7 1488 25 31 0 0 chr6 118483139 118483171 -31033866 + AT_rich Low_complexity Low_complexity 1 32 0 7 1488 195 129 0 0 chr6 118483519 118483550 -31033487 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1488 699 225 187 0 chr6 118483564 118483746 -31033291 + B3 SINE B2 1 216 0 7 1488 1147 139 33 22 chr6 118483930 118484114 -31032923 + B2_Mm2 SINE B2 1 186 -9 7 1488 23 54 0 0 chr6 118484134 118484171 -31032866 + AT_rich Low_complexity Low_complexity 1 37 0 7 1488 1215 168 80 17 chr6 118484814 118485087 -31031950 + RLTR9D LTR ERVK 102 403 0 7 1488 22 0 0 0 chr6 118487292 118487314 -31029723 + AT_rich Low_complexity Low_complexity 1 22 0 7 1488 272 171 0 0 chr6 118487372 118487413 -31029624 + B2_Mm2 SINE B2 2 42 -153 7 1488 333 242 108 49 chr6 118487676 118487828 -31029209 + RLTR13D3 LTR ERVK 981 1112 -2 7 1488 613 82 4 29 chr6 118488213 118488326 -31028711 + ORR1A4 LTR MaLR 1 165 -219 7 1488 957 150 118 85 chr6 118488453 118488664 -31028373 + URR1A DNA MER1_type 7 224 -2 7 1488 509 227 99 40 chr6 118488762 118488964 -31028073 + RMER3D-int LTR ERVK 636 849 -1993 7 23 296 174 0 0 chr6 118489053 118489099 -31027938 + RMER3D-int LTR ERVK 489 534 -2308 7 1489 23 0 0 0 chr6 118489914 118489937 -31027100 + AT_rich Low_complexity Low_complexity 1 23 0 7 1489 827 156 8 0 chr6 118491591 118491719 -31025318 + B3 SINE B2 2 130 -86 7 1489 309 310 38 21 chr6 118491778 118492026 -31025011 - L1_Mur1 LINE L1 -1342 4535 4288 7 1489 596 277 39 28 chr6 118492025 118492284 -31024753 + L1_Mur3 LINE L1 5193 5490 -822 7 1489 23 54 0 0 chr6 118492308 118492345 -31024692 + AT_rich Low_complexity Low_complexity 1 37 0 7 1489 917 131 87 23 chr6 118492465 118492637 -31024400 + B2_Mm2 SINE B2 3 185 -10 7 1489 8062 65 14 5 chr6 118493477 118495209 -31021828 + L1VL4 LINE L1 194 1945 -1614 7 1489 6549 112 59 5 chr6 118495207 118496531 -31020506 + Lx2 LINE L1 5238 6645 -352 7 1489 1394 126 5 9 chr6 118496529 118496753 -31020284 + Lx2 LINE L1 6775 6997 0 7 1489 208 306 83 30 chr6 118497662 118497786 -31019251 - MIRc SINE MIR -138 130 5 7 1489 239 317 46 46 chr6 118498162 118498271 -31018766 + MLT1J LTR MaLR 234 342 -170 7 1489 1480 70 32 5 chr6 118498551 118498738 -31018299 + B2_Mm2 SINE B2 2 193 -2 7 1489 537 209 66 15 chr6 118499157 118499293 -31017744 + B3 SINE B2 1 143 -73 7 1489 2400 103 130 0 chr6 118500407 118500777 -31016260 - MTC LTR MaLR -3 418 1 1 1489 1009 113 33 67 chr6 118502105 118502285 -31014752 - B2_Mm2 SINE B2 -18 177 4 2 1489 454 239 0 0 chr6 118502525 118502613 -31014424 + ID_B1 SINE B4 128 215 -9 3 1489 857 154 0 22 chr6 118503266 118503405 -31013632 - B1_Mus1 SINE Alu -12 136 1 4 1489 392 275 8 16 chr6 118503433 118503555 -31013482 + L1MC1 LINE L1 6198 6318 -15 5 1489 224 353 15 0 chr6 118503558 118503626 -31013411 + ID4 SINE ID 1 69 -14 6 1489 180 200 0 0 chr6 118503634 118503674 -31013363 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1489 30 0 0 0 chr6 118504327 118504357 -31012680 + AT_rich Low_complexity Low_complexity 1 30 0 8 1489 488 297 60 27 chr6 118504991 118505244 -31011793 - B4A SINE B4 -23 269 3 9 1489 246 174 0 0 chr6 118505812 118505858 -31011179 + CT-rich Low_complexity Low_complexity 1 46 0 1 1489 682 332 87 8 chr6 118505934 118506186 -31010851 - B4A SINE B4 0 292 21 1 1489 252 0 0 0 chr6 118507452 118507480 -31009557 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1489 225 0 0 0 chr6 118507548 118507573 -31009464 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1489 696 319 141 15 chr6 118507767 118508292 -31008745 + L1M2 LINE L1 2517 3107 -3036 1 1489 607 226 8 0 chr6 118508300 118508433 -31008604 - B3 SINE B2 -81 135 2 1 1489 339 305 107 0 chr6 118508504 118508635 -31008402 + RSINE1 SINE B4 8 152 -13 1 1489 396 0 0 0 chr6 118509545 118509589 -31007448 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1489 349 303 57 8 chr6 118509753 118509876 -31007161 + RSINE1 SINE B4 23 151 -14 1 1489 183 42 0 0 chr6 118509885 118509909 -31007128 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1489 524 42 14 0 chr6 118509913 118509984 -31007053 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 2 1489 414 0 0 0 chr6 118510379 118510425 -31006612 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 2 1489 251 161 18 0 chr6 118510432 118510488 -31006549 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1489 213 65 0 0 chr6 118510649 118510680 -31006357 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1489 224 160 0 20 chr6 118510887 118510938 -31006099 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 2 1489 1140 75 7 0 chr6 118510940 118511086 -31005951 - B1_Mus1 SINE Alu 0 148 2 2 1489 386 258 247 40 chr6 118512976 118513402 -31003635 - RMER5 LTR ERV1 0 534 21 2 1489 362 162 83 18 chr6 118513404 118513514 -31003523 - L1_Mus1 LINE L1 0 6582 6466 2 1489 183 204 0 0 chr6 118513628 118513672 -31003365 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1489 270 312 45 0 chr6 118513672 118513784 -31003253 - PB1D7 SINE Alu -3 117 1 2 1489 671 219 0 0 chr6 118513849 118513968 -31003069 - Lx9 LINE L1 -594 7050 6932 3 1489 451 278 172 32 chr6 118513979 118514165 -31002872 + B3 SINE B2 1 212 -4 3 1489 310 293 121 40 chr6 118514239 118514413 -31002624 + Lx9 LINE L1 7059 7246 -398 3 1489 402 21 0 0 chr6 118514433 118514480 -31002557 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1489 407 251 149 20 chr6 118514658 118514853 -31002184 - ID_B1 SINE B4 -4 220 1 3 1489 297 197 0 0 chr6 118515015 118515076 -31001961 - RSINE1 SINE B4 -102 63 3 3 1489 31 68 0 0 chr6 118515285 118515344 -31001693 + AT_rich Low_complexity Low_complexity 1 59 0 3 1489 909 198 44 15 chr6 118515452 118515657 -31001380 - MTD LTR MaLR -13 406 196 3 1489 269 346 22 92 chr6 118515674 118515700 -31001337 - MTD LTR MaLR -185 222 195 3 1489 1190 74 0 0 chr6 118515700 118515848 -31001189 - B1_Mus1 SINE Alu 0 148 1 3 1489 735 263 5 15 chr6 118515848 118516050 -31000987 - MTD LTR MaLR -211 208 10 3 1489 266 176 198 38 chr6 118516059 118516221 -31000816 - MTD-int LTR MaLR -116 1142 926 3 1489 7979 131 27 6 chr6 118516225 118518398 -30998639 + Lx3C LINE L1 4753 6974 -2 3 1489 886 188 78 5 chr6 118518873 118519066 -30997971 - B3 SINE B2 -9 207 1 4 1489 618 77 0 21 chr6 118519541 118519634 -30997403 - B2_Mm2 SINE B2 -19 176 86 4 1489 3011 21 0 0 chr6 118519634 118519969 -30997068 + IAPLTR1a_Mm LTR ERVK 1 335 -2 4 1489 4892 67 4 53 chr6 118519969 118520660 -30996377 + IAPEz-int LTR ERVK 6 662 -5819 4 1489 425 82 0 32 chr6 118520660 118520723 -30996314 + IAPEz-int LTR ERVK 1359 1419 -5062 4 1489 1823 123 4 4 chr6 118520712 118520974 -30996063 + IAPEz-int LTR ERVK 2236 2497 -5183 4 1489 953 80 24 0 chr6 118520969 118521094 -30995943 + IAPEz-int LTR ERVK 4783 4910 -2770 4 1489 21549 12 3 0 chr6 118521096 118523449 -30993588 + IAPEz-int LTR ERVK 4123 6481 0 4 1489 3008 18 3 0 chr6 118523449 118523785 -30993252 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1489 395 86 300 0 chr6 118523785 118523855 -30993182 - B2_Mm2 SINE B2 -104 91 1 4 1489 361 355 16 31 chr6 118524275 118524467 -30992570 - ERVL-E-int LTR ERVL -5103 564 376 4 1489 706 124 9 0 chr6 118525456 118525569 -30991468 - B1_Mus1 SINE Alu 0 148 35 4 1489 2687 33 0 189 chr6 118526308 118526758 -30990279 - RLTR10B2 LTR ERVK 0 365 1 4 1489 430 284 76 0 chr6 118526833 118527030 -30990007 - L1M3 LINE L1 -1278 4862 4651 4 1489 732 178 79 136 chr6 118527570 118527767 -30989270 + RMER15 LTR ERVL 361 546 -29 4 1489 432 0 0 0 chr6 118527767 118527815 -30989222 + (TTG)n Simple_repeat Simple_repeat 3 50 0 4 1489 732 178 79 136 chr6 118527815 118527845 -30989192 + RMER15 LTR ERVL 547 575 0 4 1489 1331 65 8 4 chr6 118529290 118529555 -30987482 + (TTTC)n Simple_repeat Simple_repeat 1 266 0 5 1489 1177 82 0 0 chr6 118529586 118529733 -30987304 - B1_Mus1 SINE Alu 0 148 2 5 1489 233 305 72 4 chr6 118529744 118529875 -30987162 - L1MB3 LINE L1 -92 6091 5953 5 1489 377 290 146 53 chr6 118529910 118530489 -30986548 - L1MB3 LINE L1 -292 5891 5240 5 1489 940 124 0 0 chr6 118530505 118530642 -30986395 - B1_Mur4 SINE Alu -1 149 13 5 1489 269 211 0 0 chr6 118530645 118530697 -30986340 - L1MB3 LINE L1 -898 5242 5191 5 1489 296 260 64 11 chr6 118530704 118530809 -30986228 - B1F SINE Alu -9 111 2 5 1489 238 344 108 8 chr6 118530809 118530876 -30986161 - B4A SINE B4 -206 86 7 5 1489 1590 289 66 89 chr6 118530887 118532079 -30984958 - L1MB3 LINE L1 -1005 5135 3971 5 1489 260 203 0 42 chr6 118532103 118532175 -30984862 - Lx8 LINE L1 -2 7471 7403 5 1489 311 308 29 0 chr6 118532256 118532360 -30984677 + CT-rich Low_complexity Low_complexity 2 108 0 5 1489 646 128 0 47 chr6 118532361 118532468 -30984569 - B1_Mur2 SINE Alu -31 118 17 5 1489 230 224 0 0 chr6 118532424 118532473 -30984564 - B4A SINE B4 -147 145 97 5 1489 918 281 105 24 chr6 118532709 118532877 -30984160 - L1MB7 LINE L1 -1704 6176 5953 6 1489 296 48 24 0 chr6 118532877 118532919 -30984118 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1489 918 259 98 17 chr6 118532919 118533203 -30983834 - L1MB7 LINE L1 -131 5952 5658 6 1489 198 103 0 0 chr6 118533224 118533253 -30983784 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1489 359 226 144 19 chr6 118533383 118533487 -30983550 + PB1D9 SINE Alu 1 117 -3 6 1489 375 277 266 20 chr6 118533556 118533958 -30983079 - L1MB7 LINE L1 -767 5612 5061 6 1489 851 199 7 0 chr6 118533962 118534108 -30982929 - B1_Mus1 SINE Alu -1 147 1 6 1489 679 281 79 13 chr6 118534109 118534412 -30982625 - L1MB7 LINE L1 -1441 4935 4613 6 1489 195 42 0 0 chr6 118534420 118534444 -30982593 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 6 1489 403 186 241 0 chr6 118534453 118534564 -30982473 - B1_Mus2 SINE Alu -10 139 3 6 1489 814 274 87 28 chr6 118534575 118535034 -30982003 - L1_Mur3 LINE L1 -1553 4327 3842 6 1489 266 207 0 0 chr6 118535134 118535192 -30981845 - L1MB7 LINE L1 -3952 2432 2375 6 1489 404 184 16 9 chr6 118535308 118535416 -30981621 - B1_Mus2 SINE Alu -10 137 1 6 1489 233 236 36 0 chr6 118535653 118535708 -30981329 + RSINE1 SINE B4 84 140 -25 6 1489 207 0 0 0 chr6 118535724 118535747 -30981290 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 7 1489 412 240 81 20 chr6 118535767 118535916 -30981121 - L1MB7 LINE L1 -5470 914 757 6 1489 679 168 16 31 chr6 118536028 118536157 -30980880 - B1F SINE Alu -1 148 22 7 1489 1150 285 116 29 chr6 118536200 118536691 -30980346 - L1MB7 LINE L1 -5728 656 123 6 1489 279 236 0 0 chr6 118538202 118538257 -30978780 + tRNA-Ala-GCY_ tRNA tRNA 19 73 -2 7 1489 195 129 0 0 chr6 118538280 118538311 -30978726 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1489 360 0 0 0 chr6 118539121 118539161 -30977876 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1489 258 32 0 0 chr6 118539203 118539234 -30977803 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1489 294 244 15 7 chr6 118539293 118539429 -30977608 + GA-rich Low_complexity Low_complexity 2 138 0 7 1489 195 42 0 0 chr6 118540568 118540592 -30976445 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1489 201 39 0 0 chr6 118543126 118543152 -30973885 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 7 1489 344 314 0 16 chr6 118544309 118544435 -30972602 + (TG)n Simple_repeat Simple_repeat 1 124 0 7 1489 211 239 283 0 chr6 118545121 118545234 -30971803 - L3 LINE CR1 -3 4486 4342 8 1489 195 259 0 0 chr6 118547253 118547311 -30969726 + (CATA)n Simple_repeat Simple_repeat 1 58 0 8 1489 322 261 0 25 chr6 118549035 118549127 -30967910 - BC1_Mm scRNA scRNA -61 91 2 8 1489 29 0 0 0 chr6 118549692 118549721 -30967316 + AT_rich Low_complexity Low_complexity 1 29 0 8 1489 337 282 0 0 chr6 118549721 118549799 -30967238 - ID4_ SINE ID -1 82 5 8 1489 306 259 44 11 chr6 118550476 118550566 -30966471 - L1MA5 LINE L1 -30 6270 6178 8 1489 220 292 72 40 chr6 118551441 118551566 -30965471 + MIRb SINE MIR 58 186 -82 8 1489 431 246 109 51 chr6 118551599 118551736 -30965301 + B4A SINE B4 144 288 -4 8 1489 263 355 67 36 chr6 118553366 118553559 -30963478 - Charlie8 DNA MER1_type -2151 277 79 8 1489 440 253 98 98 chr6 118557432 118557677 -30959360 + MLT1E3 LTR MaLR 371 615 -9 8 1489 378 349 0 0 chr6 118557941 118558047 -30958990 - PB1D10 SINE Alu -1 116 11 9 1489 235 400 19 0 chr6 118557959 118558064 -30958973 - ID_B1 SINE B4 -45 179 73 9 1489 559 282 43 65 chr6 118558160 118558437 -30958600 + MLT1B LTR MaLR 52 322 -68 9 1489 348 194 28 0 chr6 118558598 118558670 -30958367 - ID4_ SINE ID -4 79 6 9 1489 252 300 60 60 chr6 118561407 118561556 -30955481 + ORR1E LTR MaLR 45 193 -166 9 1489 234 162 0 0 chr6 118562061 118562098 -30954939 + MER72B LTR ERV1 634 670 -98 9 1489 279 71 0 0 chr6 118562158 118562200 -30954837 + (CAAG)n Simple_repeat Simple_repeat 1 42 0 9 1489 249 33 0 0 chr6 118564984 118565014 -30952023 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1489 441 0 0 0 chr6 118565015 118565064 -30951973 + (TC)n Simple_repeat Simple_repeat 2 50 0 9 1489 282 227 76 0 chr6 118565086 118565152 -30951885 - B4A SINE B4 -220 72 2 9 1489 294 270 0 0 chr6 118565157 118565231 -30951806 - L1M5 LINE L1 -1992 4154 4081 1 1489 727 193 13 76 chr6 118565946 118566103 -30950934 + B1_Mur1 SINE Alu 1 147 -2 1 1489 23 33 0 0 chr6 118570273 118570303 -30946734 + AT_rich Low_complexity Low_complexity 1 30 0 1 1489 1510 68 16 0 chr6 118570731 118570923 -30946114 - B2_Mm2 SINE B2 0 195 1 1 1489 298 200 62 31 chr6 118571050 118571210 -30945827 + (TATAA)n Simple_repeat Simple_repeat 4 168 0 1 1489 348 192 32 80 chr6 118571169 118571219 -30945818 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 1 1489 327 27 136 0 chr6 118571219 118571329 -30945708 + (TA)n Simple_repeat Simple_repeat 2 126 0 1 1489 348 192 32 80 chr6 118571329 118571465 -30945572 + (TTATA)n Simple_repeat Simple_repeat 2 129 0 1 1489 536 253 37 37 chr6 118572087 118572276 -30944761 - L1M2 LINE L1 -2252 3891 3703 1 1489 341 347 85 102 chr6 118572360 118572456 -30944581 - L1MEd LINE L1 -1046 1461 1379 1 1489 398 316 0 0 chr6 118572456 118572554 -30944483 - PB1D10 SINE Alu -17 100 3 1 1489 341 335 121 42 chr6 118572554 118572851 -30944186 - L1MEd LINE L1 -1129 1378 974 1 1489 276 100 0 0 chr6 118574317 118574357 -30942680 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1489 327 270 56 86 chr6 118575674 118575836 -30941201 + RMER12 LTR ERVK 692 848 -474 1 1489 251 367 33 16 chr6 118575788 118575910 -30941127 - RMER12 LTR ERVK -472 850 727 1 1489 326 308 69 7 chr6 118576192 118576336 -30940701 + MIR SINE MIR 58 210 -52 1 1489 540 106 0 0 chr6 118581693 118581778 -30935259 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1489 237 330 55 4 chr6 118583554 118583660 -30933377 + MIRc SINE MIR 52 160 -48 1 1489 180 0 0 0 chr6 118586059 118586079 -30930958 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1 1489 378 0 0 0 chr6 118586337 118586379 -30930658 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1489 234 176 0 0 chr6 118587513 118587564 -30929473 + A-rich Low_complexity Low_complexity 1 51 0 1 1489 328 239 175 9 chr6 118587871 118587985 -30929052 + L1MEg LINE L1 1797 1929 -4155 1 1489 264 100 0 0 chr6 118588341 118588381 -30928656 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1489 2954 128 18 109 chr6 118592398 118593011 -30924026 + RLTR31B_Mm LTR ERVK 1 557 0 1 1489 243 308 152 8 chr6 118593088 118593206 -30923831 + MIR SINE MIR 92 226 -36 1 1489 229 274 13 27 chr6 118594314 118594389 -30922648 + GA-rich Low_complexity Low_complexity 6 79 0 1 1489 187 354 0 12 chr6 118595924 118596020 -30921017 + MIR SINE MIR 93 192 -84 1 1489 231 303 91 7 chr6 118598508 118598651 -30918386 - L1MC LINE L1 -1538 4608 4454 1 1489 382 297 42 8 chr6 118599282 118599401 -30917636 + ORR1E LTR MaLR 1 123 -236 1 1489 343 193 23 0 chr6 118599403 118599491 -30917546 + GA-rich Low_complexity Low_complexity 3 92 0 1 1489 264 59 0 0 chr6 118602530 118602564 -30914473 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1489 325 309 122 0 chr6 118604619 118604758 -30912279 + MIRc SINE MIR 98 253 -15 1 1489 234 150 0 0 chr6 118604959 118604999 -30912038 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1489 196 172 17 17 chr6 118604999 118605058 -30911979 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1489 653 174 71 110 chr6 118605811 118605966 -30911071 - B1_Mur1 SINE Alu 0 149 1 1 1489 255 269 0 0 chr6 118608131 118608183 -30908854 + MER52-int LTR ERV1 302 353 -6738 1 1489 1056 253 40 92 chr6 118608847 118609247 -30907790 + MTE2b LTR MaLR 1 379 0 1 1489 308 279 40 92 chr6 118610563 118610737 -30906300 - L1MCa LINE L1 -4526 1982 1818 1 1489 469 312 44 28 chr6 118610808 118610989 -30906048 - RMER5 LTR ERV1 -188 346 163 1 1489 1167 262 12 44 chr6 118611143 118611187 -30905850 - Lx8 LINE L1 -1018 6455 6416 1 1489 2437 91 163 5 chr6 118611187 118611597 -30905440 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1489 1167 276 16 50 chr6 118611597 118611983 -30905054 - Lx8 LINE L1 -1058 6415 6043 1 1489 1358 273 86 16 chr6 118611982 118612473 -30904564 + Lx8 LINE L1 6947 7471 -2 1 1489 238 218 75 56 chr6 118612378 118612485 -30904552 + RMER1C Other Other 1222 1330 -12 1 1489 351 0 0 0 chr6 118613164 118613203 -30903834 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1489 1530 191 144 20 chr6 118613203 118613525 -30903512 + MTD LTR MaLR 12 381 -38 1 1489 2186 182 111 16 chr6 118613525 118614012 -30903025 + MT2A LTR ERVL 1 533 0 1 1489 1530 191 144 20 chr6 118614012 118614037 -30903000 + MTD LTR MaLR 382 402 -17 1 1489 2431 232 127 82 chr6 118614072 118615102 -30901935 + MTD-int LTR MaLR 23 1098 0 1 1489 1661 202 125 14 chr6 118615110 118615477 -30901560 + MTD LTR MaLR 12 419 0 1 1489 768 290 42 59 chr6 118615954 118616310 -30900727 + Lx8 LINE L1 7124 7473 0 1 1489 550 262 36 27 chr6 118616338 118616604 -30900433 + Lx7 LINE L1 5690 5996 -1477 1 1489 257 278 176 11 chr6 118616842 118616933 -30900104 + RMER5 LTR ERV1 417 522 -12 1 1489 495 33 0 0 chr6 118617891 118617952 -30899085 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 1 1489 268 208 106 58 chr6 118617961 118618101 -30898936 + MIR SINE MIR 17 160 -108 1 1489 333 68 0 0 chr6 118619214 118619258 -30897779 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1489 212 264 206 14 chr6 118619414 118619487 -30897550 + MER5B DNA MER1_type 89 175 -3 1 1489 588 179 0 0 chr6 118619550 118619662 -30897375 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1489 339 295 0 10 chr6 118619936 118620032 -30897005 + PB1D10 SINE Alu 5 99 -18 1 1489 233 291 25 0 chr6 118620052 118620131 -30896906 + ID2 SINE ID 2 82 -1 1 186 489 182 0 0 chr6 118620131 118620230 -30896807 + GA-rich Low_complexity Low_complexity 1 99 0 1 1490 621 308 65 22 chr6 118621145 118621377 -30895660 + MIR SINE MIR 9 250 -12 1 1490 1465 297 81 56 chr6 118626981 118627697 -30889340 + Lx8 LINE L1 6738 7471 -2 1 1490 279 321 196 13 chr6 118628370 118628528 -30888509 + MLT1C LTR MaLR 50 236 -231 1 1490 23 68 0 0 chr6 118628920 118628964 -30888073 + AT_rich Low_complexity Low_complexity 1 44 0 1 1490 264 130 0 0 chr6 118629034 118629080 -30887957 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 1 1490 582 248 0 55 chr6 118629095 118629223 -30887814 + B1_Mur1 SINE Alu 29 149 0 1 1490 496 286 43 77 chr6 118629296 118629532 -30887505 - ID_B1 SINE B4 -61 231 4 1 1490 246 62 0 0 chr6 118630098 118630130 -30886907 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 1 1490 3019 239 129 17 chr6 118631232 118632074 -30884963 + RCHARR1 DNA MER1_type 1 937 -37 1 1490 898 234 30 10 chr6 118632075 118632278 -30884759 + B3 SINE B2 3 209 -7 1 1490 258 291 58 0 chr6 118632526 118632629 -30884408 + L1MA5 LINE L1 6189 6297 -3 1 1490 211 200 0 0 chr6 118634175 118634210 -30882827 + polypyrimidine Low_complexity Low_complexity 3 37 0 1 1490 459 0 0 0 chr6 118635186 118635237 -30881800 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1 1490 207 0 0 0 chr6 118636318 118636341 -30880696 + (CCCTG)n Simple_repeat Simple_repeat 3 25 0 1 1490 401 330 67 13 chr6 118639421 118639645 -30877392 + L2a LINE L2 2588 2823 -596 1 1490 308 43 22 0 chr6 118639941 118639987 -30877050 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1490 332 321 33 3 chr6 118639992 118640113 -30876924 - RSINE1 SINE B4 -24 141 17 1 1490 353 272 77 58 chr6 118640152 118640308 -30876729 + L2a LINE L2 3268 3426 0 1 1490 234 248 29 29 chr6 118640434 118640538 -30876499 + Lx8 LINE L1 7368 7471 -2 1 1490 236 212 11 81 chr6 118640472 118640559 -30876478 + RMER1C Other Other 1260 1340 -2 1 1490 748 192 153 49 chr6 118642547 118642750 -30874287 - URR1B DNA MER1_type -1 224 1 1 1490 369 156 16 0 chr6 118643007 118643071 -30873966 - MIR SINE MIR -119 143 79 1 1490 536 212 58 25 chr6 118644832 118644953 -30872084 - RSINE1 SINE B4 -38 127 3 1 1490 630 302 152 34 chr6 118644965 118645224 -30871813 - L1MB2 LINE L1 -1 6170 5884 1 1490 180 77 0 0 chr6 118645224 118645250 -30871787 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1490 630 305 153 34 chr6 118645250 118645545 -30871492 - L1MB2 LINE L1 -288 5883 5553 1 1490 974 268 82 5 chr6 118645566 118645915 -30871122 + MTEa LTR MaLR 4 421 0 1 1490 24 0 0 0 chr6 118646965 118646989 -30870048 + AT_rich Low_complexity Low_complexity 1 24 0 1 1490 192 234 64 0 chr6 118647002 118647049 -30869988 - MIRc SINE MIR -125 143 94 1 1490 180 262 45 76 chr6 118647966 118648032 -30869005 + MIRc SINE MIR 66 129 -139 1 1490 286 258 16 0 chr6 118648864 118648926 -30868111 - MER5B DNA MER1_type -115 63 1 1 1490 297 0 0 0 chr6 118649820 118649853 -30867184 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1490 456 298 76 14 chr6 118652879 118653090 -30863947 + MER33 DNA MER1_type 55 278 -46 1 1490 330 87 0 0 chr6 118653720 118653766 -30863271 + (TCCA)n Simple_repeat Simple_repeat 4 49 0 1 1490 274 368 27 70 chr6 118653944 118654131 -30862906 + LTR81B LTR ERV1? 406 584 -809 1 1490 220 271 28 14 chr6 118656346 118656417 -30860620 + GA-rich Low_complexity Low_complexity 4 75 0 1 1490 549 325 63 57 chr6 118656571 118656904 -30860133 + Lx8 LINE L1 7131 7465 -8 1 1490 30 0 0 0 chr6 118657077 118657107 -30859930 + AT_rich Low_complexity Low_complexity 1 30 0 1 1490 189 237 0 0 chr6 118659231 118659269 -30857768 - MIR3 SINE MIR -3 205 168 1 1490 999 92 43 0 chr6 118660012 118660153 -30856884 - B1_Mus1 SINE Alu 0 148 2 1 1490 928 123 167 0 chr6 118660360 118660522 -30856515 - B2_Mm2 SINE B2 -5 190 2 1 1490 1012 144 165 0 chr6 118662408 118662602 -30854435 + URR1A DNA MER1_type 1 226 0 1 1490 608 67 11 0 chr6 118663976 118664066 -30852971 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 1490 431 255 20 0 chr6 118664412 118664510 -30852527 - PB1D10 SINE Alu -15 102 3 1 1490 256 276 29 96 chr6 118664871 118665007 -30852030 - MIR3 SINE MIR 0 208 82 1 1490 540 30 0 0 chr6 118665753 118665819 -30851218 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1490 396 0 0 0 chr6 118666332 118666376 -30850661 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1490 287 341 16 0 chr6 118667462 118667588 -30849449 + GA-rich Low_complexity Low_complexity 26 153 0 2 1490 292 197 88 29 chr6 118668050 118668118 -30848919 - B4A SINE B4 -219 73 2 2 1490 249 302 61 20 chr6 118668370 118668468 -30848569 - PB1 SINE Alu -2 125 24 2 1490 1085 264 58 78 chr6 118669994 118670376 -30846661 + MLT1B LTR MaLR 1 374 -16 2 1490 379 339 77 31 chr6 118670538 118670733 -30846304 + MER58A DNA MER1_type 19 222 -2 2 1490 215 402 55 32 chr6 118670855 118671053 -30845984 + MIR SINE MIR 47 244 -24 2 1490 444 328 202 35 chr6 118671268 118671644 -30845393 + LTR33 LTR ERVL 50 488 -27 2 1490 331 303 134 16 chr6 118672980 118673189 -30843848 - MIRb SINE MIR -20 248 3 2 1490 261 333 9 37 chr6 118674171 118674280 -30842757 - MIR SINE MIR -64 144 39 2 1490 180 200 101 51 chr6 118674423 118674502 -30842535 + MIRb SINE MIR 122 204 -64 2 1490 393 22 0 0 chr6 118676900 118676946 -30840091 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1490 524 253 12 42 chr6 118678122 118678287 -30838750 - RSINE1 SINE B4 -4 161 2 2 1490 669 313 209 47 chr6 118679066 118679790 -30837247 + L2a LINE L2 2240 3080 -339 2 1490 992 203 20 30 chr6 118679829 118680032 -30837005 + MTB LTR MaLR 200 400 0 2 1490 6813 103 9 83 chr6 118680032 118681217 -30835820 + MTB-int LTR MaLR 1 1098 0 2 1490 3090 70 23 0 chr6 118681217 118681605 -30835432 + MTB LTR MaLR 1 397 -3 2 1490 346 277 152 15 chr6 118681674 118681806 -30835231 + L2a LINE L2 3235 3384 -42 2 1490 653 277 301 23 chr6 118682148 118682364 -30834673 + B4 SINE B4 3 278 -14 2 1490 366 80 0 0 chr6 118682427 118682477 -30834560 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1490 374 304 70 18 chr6 118684079 118684193 -30832844 - MER5A DNA MER1_type -69 120 1 2 1490 395 310 55 70 chr6 118685474 118685675 -30831362 + MER63A DNA AcHobo 1 198 -12 2 1490 790 316 257 32 chr6 118687600 118688093 -30828944 - MER82 DNA MER2_type -48 605 2 2 1490 264 346 83 18 chr6 118688560 118688778 -30828259 - Tigger15a DNA TcMar -20 695 464 2 1490 283 339 41 33 chr6 118689134 118689256 -30827781 + MIR SINE MIR 108 230 -32 2 1490 315 359 79 20 chr6 118690222 118690424 -30826613 - MIRb SINE MIR -18 250 37 2 1490 198 0 0 0 chr6 118692434 118692456 -30824581 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 2 1490 230 176 143 29 chr6 118693447 118693517 -30823520 + MER5A DNA MER1_type 7 84 -105 2 1490 2044 63 52 0 chr6 118693517 118693785 -30823252 + L1_Mus1 LINE L1 6259 6540 -27 2 1490 383 52 0 17 chr6 118693785 118693844 -30823193 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 2 1490 413 319 53 48 chr6 118694431 118694658 -30822379 + L2a LINE L2 3199 3426 0 2 1490 450 0 0 0 chr6 118694710 118694760 -30822277 + (TATG)n Simple_repeat Simple_repeat 3 52 0 2 1490 1470 147 4 9 chr6 118695596 118695822 -30821215 + URR1B DNA MER1_type 1 225 0 2 1490 208 253 63 144 chr6 118697898 118698009 -30819028 + L2c LINE L2 3282 3383 -4 2 1490 462 114 0 0 chr6 118698062 118698132 -30818905 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1490 336 48 0 0 chr6 118698134 118698176 -30818861 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 2 1490 258 159 0 42 chr6 118698436 118698508 -30818529 + CT-rich Low_complexity Low_complexity 5 73 0 2 1490 258 176 0 0 chr6 118699164 118699215 -30817822 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1490 350 325 142 51 chr6 118702414 118702725 -30814312 - L1ME1 LINE L1 -137 6042 5704 2 1490 411 202 0 0 chr6 118706210 118706309 -30810728 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1490 1063 202 19 0 chr6 118706375 118706583 -30810454 - B3 SINE B2 -4 212 1 2 1490 312 294 29 0 chr6 118707700 118707768 -30809269 - MIRb SINE MIR -165 103 34 2 1490 5234 24 0 0 chr6 118709629 118710218 -30806819 - L1Md_T LINE L1 0 6582 5994 2 1490 347 219 0 0 chr6 118710331 118710395 -30806642 + RSINE1 SINE B4 58 121 -44 2 1490 206 215 131 60 chr6 118712494 118712578 -30804459 - MER5A DNA MER1_type -83 106 17 2 1490 224 329 178 0 chr6 118713230 118713382 -30803655 - L2c LINE L2 -3 3384 3206 2 1490 187 337 78 11 chr6 118715072 118715162 -30801875 - MIR SINE MIR -156 106 11 2 1490 306 0 0 0 chr6 118715205 118715239 -30801798 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1490 320 255 20 60 chr6 118715616 118715716 -30801321 + L1M5 LINE L1 3847 3942 -2204 2 1490 343 335 69 37 chr6 118715735 118716200 -30800837 - L1MEg LINE L1 -5119 965 486 2 1490 186 250 43 29 chr6 118716677 118716747 -30800290 + L2 LINE L2 2477 2547 -872 2 1490 771 275 71 41 chr6 118716955 118717221 -30799816 + B4A SINE B4 3 276 -16 2 1490 201 147 0 0 chr6 118718442 118718476 -30798561 + (T)n Simple_repeat Simple_repeat 1 34 0 2 1490 1106 90 0 0 chr6 118718476 118718621 -30798416 - B1_Mus1 SINE Alu 0 148 4 2 1490 417 20 0 0 chr6 118718663 118718713 -30798324 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1490 268 294 55 47 chr6 118718773 118718883 -30798154 + L1MEf LINE L1 854 961 -5239 2 1490 218 32 0 31 chr6 118718883 118718915 -30798122 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1490 268 294 55 47 chr6 118718915 118719079 -30797958 + L1MEf LINE L1 962 1129 -5071 2 1490 198 309 27 134 chr6 118720056 118720147 -30796890 - MIR3 SINE MIR -16 192 110 2 1490 2935 35 3 3 chr6 118720147 118720493 -30796544 + ORR1A0 LTR MaLR 1 346 0 2 1490 198 309 27 134 chr6 118720493 118720513 -30796524 - MIR3 SINE MIR -99 109 93 2 1490 195 189 75 0 chr6 118723230 118723283 -30793754 - L2 LINE L2 -1285 2134 2078 2 1490 2132 149 119 5 chr6 118723393 118723771 -30793266 + MTC LTR MaLR 1 421 0 2 1490 2107 186 45 17 chr6 118724819 118725223 -30791814 + MTD LTR MaLR 5 419 0 2 1490 230 318 85 79 chr6 118726012 118726176 -30790861 + L4 LINE RTE 1018 1182 -847 2 1490 260 338 105 28 chr6 118727580 118727903 -30789134 - L2 LINE L2 -547 2872 2525 2 1490 303 390 69 0 chr6 118728476 118728635 -30788402 - MER33 DNA MER1_type -86 238 69 2 1490 316 358 144 41 chr6 118728982 118729523 -30787514 - L2 LINE L2 -1928 1491 895 2 1490 247 298 55 31 chr6 118731690 118731818 -30785219 + MER5A DNA MER1_type 57 187 -2 2 1490 339 25 0 0 chr6 118732968 118733008 -30784029 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1490 309 278 41 0 chr6 118733518 118733615 -30783422 + MIRb SINE MIR 65 165 -103 2 1490 514 272 122 4 chr6 118734877 118735106 -30781931 + L1MB5 LINE L1 5795 6050 -124 2 1490 187 268 68 51 chr6 118738490 118738549 -30778488 - L4 LINE RTE -907 1122 1063 2 1490 297 319 114 22 chr6 118739719 118740078 -30776959 + L1MA6 LINE L1 5909 6300 0 2 1490 443 18 18 0 chr6 118740688 118740744 -30776293 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1490 250 276 0 0 chr6 118740757 118740833 -30776204 + GA-rich Low_complexity Low_complexity 1 76 0 2 1490 608 102 10 0 chr6 118740848 118740946 -30776091 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 2 1490 252 305 48 37 chr6 118741789 118741924 -30775113 + MIRb SINE MIR 26 170 -106 2 1490 239 294 0 68 chr6 118743180 118743253 -30773784 - Charlie18a DNA MER1_type -59 283 216 2 1490 250 34 48 48 chr6 118743471 118743533 -30773504 + (TTTTTG)n Simple_repeat Simple_repeat 1 62 0 2 1490 1251 34 14 0 chr6 118743533 118743679 -30773358 - B1_Mus1 SINE Alu 0 148 1 2 1490 449 251 12 0 chr6 118743707 118743807 -30773230 + PB1D10 SINE Alu 1 111 -16 2 1490 363 333 9 0 chr6 118743806 118743911 -30773126 + MLT1H LTR MaLR 89 194 -355 2 1490 226 318 62 72 chr6 118744076 118744269 -30772768 + MLT1H LTR MaLR 316 506 -43 2 1490 1021 254 66 23 chr6 118744828 118745180 -30771857 - MTE2a LTR MaLR -4 375 11 2 1490 790 251 52 5 chr6 118745187 118745379 -30771658 + B3 SINE B2 2 202 -14 2 1490 28 0 0 0 chr6 118745387 118745415 -30771622 + AT_rich Low_complexity Low_complexity 1 28 0 2 1490 1141 229 9 0 chr6 118745422 118745636 -30771401 + B3 SINE B2 1 216 0 2 1490 273 151 0 0 chr6 118746224 118746277 -30770760 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1490 473 252 53 108 chr6 118747527 118747685 -30769352 + B3 SINE B2 37 203 -13 2 1490 277 291 191 30 chr6 118747968 118748099 -30768938 + MIRc SINE MIR 104 255 -13 2 1490 265 326 60 23 chr6 118748208 118748403 -30768634 - MIRm SINE MIR -7 201 1 2 1490 266 243 146 0 chr6 118749605 118749708 -30767329 - PB1 SINE Alu -9 118 1 2 1490 194 222 149 23 chr6 118750190 118750295 -30766742 - MIRc SINE MIR -129 139 12 2 1491 1588 204 129 41 chr6 118751442 118751861 -30765176 + MT2A LTR ERVL 1 462 -71 2 1491 198 103 0 0 chr6 118751861 118751890 -30765147 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 2 1491 1588 204 129 41 chr6 118751890 118751960 -30765077 + MT2A LTR ERVL 463 533 0 2 1491 296 340 38 0 chr6 118755499 118755605 -30761432 + MER103 DNA DNA 10 119 -47 2 1491 231 354 91 26 chr6 118755995 118756153 -30760884 - MIRm SINE MIR -76 200 34 2 1491 253 317 39 19 chr6 118759595 118759698 -30757339 - LTR78 LTR ERV1 -324 980 876 2 1491 976 83 0 43 chr6 118759938 118760126 -30756911 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1491 859 104 29 0 chr6 118760147 118760320 -30756717 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1491 309 249 0 34 chr6 118760328 118760507 -30756530 + (CATA)n Simple_repeat Simple_repeat 1 173 0 2 1491 340 267 0 0 chr6 118760508 118760594 -30756443 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 1491 342 250 13 0 chr6 118762281 118762357 -30754680 + ID2 SINE ID 4 80 -3 2 1491 301 324 56 19 chr6 118762442 118762549 -30754488 + L1MDa LINE L1 250 360 -6273 2 1491 429 90 0 0 chr6 118762591 118762658 -30754379 + (TCC)n Simple_repeat Simple_repeat 1 67 0 2 1491 367 292 65 19 chr6 118762658 118762766 -30754271 - PB1D7 SINE Alu -5 115 3 2 1491 336 311 38 19 chr6 118762675 118762780 -30754257 - ID_B1 SINE B4 -48 176 70 2 1491 486 293 25 55 chr6 118762808 118763007 -30754030 + ORR1E LTR MaLR 6 198 -161 3 1491 1032 310 51 25 chr6 118763109 118763619 -30753418 - L1MB4 LINE L1 -33 6147 5625 3 1491 348 265 0 0 chr6 118763952 118764020 -30753017 - tRNA-Ala-GCY_ tRNA tRNA -3 72 5 3 1491 295 269 122 32 chr6 118764046 118764169 -30752868 + L1MDa LINE L1 340 473 -6160 2 1491 368 294 37 141 chr6 118764457 118764761 -30752276 + L1MDa LINE L1 904 1202 -5431 2 1491 703 126 0 0 chr6 118764761 118764872 -30752165 + Lx4A LINE L1 6948 7058 0 3 1491 368 294 37 141 chr6 118764872 118764999 -30752038 + L1MDa LINE L1 1203 1290 -5343 2 1491 346 244 61 0 chr6 118765070 118765152 -30751885 + MTE2a LTR MaLR 47 133 -246 3 1491 593 255 67 0 chr6 118765203 118765352 -30751685 + MTE2a LTR MaLR 217 375 -4 3 1491 1361 281 163 30 chr6 118765409 118765857 -30751180 + L1MDa LINE L1 1451 1910 -4723 2 1491 234 0 0 0 chr6 118765857 118765883 -30751154 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 1491 1361 281 163 30 chr6 118765883 118766324 -30750713 + L1MDa LINE L1 1911 2458 -4175 2 1491 275 236 89 11 chr6 118766325 118766415 -30750622 + L1MD2 LINE L1 5917 6013 -346 3 1491 234 91 0 0 chr6 118766523 118766556 -30750481 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1491 245 260 137 30 chr6 118766570 118766701 -30750336 + L1MD2 LINE L1 6199 6343 -16 3 1491 1669 46 0 0 chr6 118767029 118767245 -30749792 - L1Md_F3 LINE L1 -610 5974 5759 3 1491 432 0 0 0 chr6 118768103 118768151 -30748886 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1491 319 251 138 8 chr6 118768815 118768952 -30748085 - MIR3 SINE MIR -94 174 10 3 1491 252 0 0 0 chr6 118769145 118769173 -30747864 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1491 253 302 166 11 chr6 118769799 118769980 -30747057 - MIRb SINE MIR -38 230 22 3 1491 249 328 97 9 chr6 118770918 118771032 -30746005 - LTR33C LTR ERVL -324 305 182 3 1491 2268 238 56 18 chr6 118772143 118773119 -30743918 + L1_Rod LINE L1 903 1926 -3921 3 1491 463 231 118 37 chr6 118773254 118773389 -30743648 + B1_Mur1 SINE Alu 4 149 0 3 1491 635 212 43 7 chr6 118773393 118773531 -30743506 + B3 SINE B2 1 143 -73 3 1491 264 318 115 92 chr6 118773996 118774270 -30742767 - MTEb LTR MaLR 0 379 82 3 1491 461 331 52 0 chr6 118774450 118774586 -30742451 + RSINE1 SINE B4 4 146 -19 3 1491 1516 134 4 34 chr6 118775152 118775391 -30741646 - MTC LTR MaLR -189 232 1 3 1491 267 330 101 50 chr6 118777614 118777753 -30739284 - MIRb SINE MIR -45 223 77 3 1491 351 0 0 0 chr6 118777753 118777792 -30739245 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1491 259 330 101 50 chr6 118777792 118777850 -30739187 - MIRb SINE MIR -192 76 16 3 1491 293 0 0 26 chr6 118778541 118778579 -30738458 + (CAA)n Simple_repeat Simple_repeat 1 37 0 3 1491 578 322 11 16 chr6 118779206 118779389 -30737648 + MER3 DNA MER1_type 8 189 -20 3 1491 1140 244 121 44 chr6 118779921 118780299 -30736738 + MTD LTR MaLR 1 417 -2 3 1491 243 0 0 0 chr6 118781078 118781105 -30735932 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1491 270 268 66 74 chr6 118781642 118781656 -30735381 - MT2B LTR ERVL -315 286 167 3 1491 519 215 56 0 chr6 118781656 118781763 -30735274 - B1_Mur1 SINE Alu -34 115 3 3 1491 251 322 121 9 chr6 118781662 118781778 -30735259 - B4 SINE B4 -94 198 70 3 1491 252 0 0 0 chr6 118782384 118782412 -30734625 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1491 1028 215 53 30 chr6 118782441 118782705 -30734332 - MER63D DNA AcHobo -688 373 104 3 1491 1183 81 0 0 chr6 118782932 118783080 -30733957 - B1_Mus1 SINE Alu 0 148 1 3 1491 439 243 10 10 chr6 118783659 118783763 -30733274 - MER63D DNA AcHobo -948 113 10 3 1491 302 297 26 18 chr6 118783779 118783892 -30733145 + MER5B DNA MER1_type 65 178 0 3 1491 417 226 20 0 chr6 118784916 118785018 -30732019 + U6 snRNA snRNA 4 107 0 3 1491 645 240 13 33 chr6 118785983 118786134 -30730903 - B1_Mur1 SINE Alu 0 149 2 3 1491 1219 241 138 25 chr6 118786674 118787066 -30729971 + Lx8 LINE L1 7037 7472 -1 3 1491 22 35 0 0 chr6 118787072 118787101 -30729936 + AT_rich Low_complexity Low_complexity 1 29 0 3 1491 540 219 0 23 chr6 118787251 118787382 -30729655 + MER34B-int LTR ERV1 1986 2113 -3243 3 1491 467 251 17 8 chr6 118787784 118788025 -30729012 + CT-rich Low_complexity Low_complexity 1 243 0 3 1491 352 140 0 0 chr6 118787798 118787848 -30729189 + (TCCCC)n Simple_repeat Simple_repeat 3 52 0 3 1491 730 190 0 0 chr6 118788034 118788150 -30728887 - B1_Mur4 SINE Alu -34 116 1 3 1491 242 333 32 11 chr6 118789870 118789964 -30727073 + ORR1E LTR MaLR 1 96 -263 3 1491 429 256 143 46 chr6 118790457 118790674 -30726363 - Charlie4a DNA MER1_type -265 243 6 3 1491 419 272 43 60 chr6 118791253 118791294 -30725743 + CYRA11_Mm Unknown Y-chromosome 132 312 -305 3 1491 911 141 0 7 chr6 118791294 118791437 -30725600 - URR1B DNA MER1_type -1 224 83 3 1491 256 291 60 45 chr6 118791546 118791679 -30725358 - Charlie4z DNA MER1_type -8 159 25 3 1491 240 122 0 0 chr6 118792325 118792366 -30724671 + (CCCCCA)n Simple_repeat Simple_repeat 1 41 0 3 1491 702 262 37 0 chr6 118792724 118792888 -30724149 + ID_B1 SINE B4 1 170 -54 3 1491 364 253 77 0 chr6 118792809 118792900 -30724137 + PB1D10 SINE Alu 7 104 -13 3 1491 186 43 0 0 chr6 118792900 118792923 -30724114 + (CAACC)n Simple_repeat Simple_repeat 1 23 0 3 1491 234 191 0 0 chr6 118793455 118793502 -30723535 + A-rich Low_complexity Low_complexity 2 48 0 3 1491 248 154 19 0 chr6 118794174 118794226 -30722811 + GA-rich Low_complexity Low_complexity 1 53 0 3 1491 417 232 8 67 chr6 118794346 118794466 -30722571 - MER97c DNA MER1_type? -911 179 67 3 1491 208 287 138 9 chr6 118795121 118795237 -30721800 + MIRb SINE MIR 22 152 -116 3 1491 816 155 0 0 chr6 118795658 118795800 -30721237 + GA-rich Low_complexity Low_complexity 3 144 0 3 1491 1639 241 54 32 chr6 118797221 118797637 -30719400 + MTD LTR MaLR 1 407 -12 3 1491 248 259 35 0 chr6 118798313 118798371 -30718666 + ID_B1 SINE B4 114 173 -51 3 1491 230 173 94 118 chr6 118799770 118799855 -30717182 - MIRm SINE MIR -190 86 4 3 1491 1433 53 32 11 chr6 118800780 118800970 -30716067 - B2_Mm2 SINE B2 -1 194 1 3 1491 311 193 18 0 chr6 118801002 118801059 -30715978 + HAL1-3A_ME LINE L1 1977 2034 -824 3 1491 953 110 86 49 chr6 118801696 118801858 -30715179 + URR1A DNA MER1_type 59 226 0 3 1491 396 280 91 40 chr6 118802225 118802400 -30714637 + MER5A DNA MER1_type 4 187 -2 3 1491 287 324 246 21 chr6 118802605 118803031 -30714006 - L3 LINE CR1 -240 4249 3728 3 1491 339 25 0 0 chr6 118803599 118803639 -30713398 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1491 465 66 0 0 chr6 118803853 118803914 -30713123 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 1491 1164 48 0 13 chr6 118803914 118804063 -30712974 - B2_Mm2 SINE B2 -47 148 2 3 1491 1486 233 29 20 chr6 118804826 118805176 -30711861 - Lx8 LINE L1 -141 7332 6980 3 1491 317 247 0 123 chr6 118805174 118805280 -30711757 - Lx8 LINE L1 -767 6706 6614 3 1491 829 41 4 0 chr6 118805307 118805418 -30711619 - B1_Mus2 SINE Alu -11 138 24 3 1491 1006 283 83 88 chr6 118805418 118805555 -30711482 - Lx8 LINE L1 -874 6599 6475 3 1491 772 105 17 9 chr6 118805555 118805665 -30711372 + PB1D9 SINE Alu 1 112 -8 3 1491 222 37 0 0 chr6 118805665 118805692 -30711345 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1491 1006 283 83 88 chr6 118805692 118805968 -30711069 - Lx8 LINE L1 -999 6474 6192 3 1491 318 203 40 0 chr6 118806405 118806479 -30710558 - Lx8 LINE L1 -1548 5925 5849 3 1491 321 197 0 0 chr6 118806599 118806665 -30710372 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 1491 515 262 68 15 chr6 118806750 118806882 -30710155 - RSINE1 SINE B4 0 165 27 3 1491 408 125 0 0 chr6 118807164 118807228 -30709809 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1491 962 186 75 18 chr6 118807392 118807671 -30709366 - Lx9 LINE L1 0 7644 7350 3 1491 226 284 15 15 chr6 118808070 118808138 -30708899 - ID2 SINE ID -14 69 2 3 1491 230 210 76 61 chr6 118808266 118808332 -30708705 - MIRc SINE MIR -142 126 60 3 1491 210 325 86 16 chr6 118808839 118808967 -30708070 - L3 LINE CR1 -814 3675 3539 3 1491 309 51 0 0 chr6 118809183 118809222 -30707815 + (CAG)n Simple_repeat Simple_repeat 3 41 0 3 1491 498 163 0 0 chr6 118809810 118809908 -30707129 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 1491 441 0 0 0 chr6 118811307 118811356 -30705681 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1491 252 0 0 0 chr6 118811481 118811509 -30705528 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1491 700 290 77 77 chr6 118811785 118812125 -30704912 - ORR1E LTR MaLR -14 345 6 3 1491 236 340 106 44 chr6 118812132 118812292 -30704745 - MIRb SINE MIR -94 174 5 3 1491 248 0 31 0 chr6 118812619 118812651 -30704386 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1491 224 361 20 20 chr6 118813234 118813333 -30703704 - MIR3 SINE MIR -22 186 88 3 1491 363 333 117 41 chr6 118813771 118814062 -30702975 - ORR1E LTR MaLR -46 313 1 3 1491 672 124 0 0 chr6 118814150 118814255 -30702782 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 3 1491 360 198 63 42 chr6 118814257 118814352 -30702685 - PB1 SINE Alu -15 112 16 3 1491 378 0 0 0 chr6 118814425 118814467 -30702570 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1491 329 307 21 35 chr6 118814534 118814679 -30702358 + RLTR42-int LTR ERVK 1258 1400 -4122 3 1491 215 125 25 0 chr6 118815267 118815307 -30701730 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 3 1491 220 244 73 52 chr6 118816337 118816442 -30700595 + MIRc SINE MIR 23 138 -130 3 1491 208 167 24 0 chr6 118818201 118818243 -30698794 + (CAATT)n Simple_repeat Simple_repeat 4 46 0 3 1491 209 174 43 0 chr6 118819163 118819209 -30697828 + (CCCCAA)n Simple_repeat Simple_repeat 6 53 0 3 1491 1353 169 5 0 chr6 118819465 118819684 -30697353 - URR1A DNA MER1_type -6 220 1 3 1491 204 146 0 24 chr6 118821394 118821436 -30695601 + A-rich Low_complexity Low_complexity 6 46 0 3 1491 229 341 18 22 chr6 118821562 118821701 -30695336 + MIR SINE MIR 39 170 -98 3 1491 226 267 0 0 chr6 118822757 118822802 -30694235 + MIR3 SINE MIR 110 154 -54 3 1491 230 410 12 42 chr6 118825994 118826162 -30690875 - MamRep38 DNA hAT -41 254 92 3 1491 1049 269 129 30 chr6 118827603 118828006 -30689031 - L1MA5A LINE L1 -302 5995 5553 3 1491 181 282 0 0 chr6 118828055 118828094 -30688943 + L2c LINE L2 3121 3159 -228 4 1491 440 193 176 0 chr6 118828229 118828348 -30688689 + MER53 DNA hAT 39 178 -15 4 1491 219 157 19 38 chr6 118828350 118828403 -30688634 + T-rich Low_complexity Low_complexity 4 55 0 4 1491 211 368 136 25 chr6 118828600 118828798 -30688239 + MIRc SINE MIR 3 222 -46 4 1491 316 284 160 44 chr6 118828851 118829057 -30687980 + Tigger15a DNA TcMar 338 567 -148 4 1491 436 312 82 36 chr6 118830702 118830898 -30686139 + L1ME4a LINE L1 5757 5961 -163 4 1491 41 66 0 0 chr6 118830905 118830981 -30686056 + AT_rich Low_complexity Low_complexity 1 76 0 4 1491 1146 188 40 0 chr6 118831017 118831219 -30685818 + B3 SINE B2 1 210 -6 4 1491 26 0 0 0 chr6 118831282 118831308 -30685729 + AT_rich Low_complexity Low_complexity 1 26 0 4 1491 337 240 45 55 chr6 118832561 118832671 -30684366 + MIRc SINE MIR 158 266 -2 4 1491 414 0 0 0 chr6 118832989 118833035 -30684002 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1491 331 300 16 16 chr6 118833365 118833628 -30683409 + (TGGA)n Simple_repeat Simple_repeat 1 263 0 4 1491 245 284 7 0 chr6 118833696 118833837 -30683200 + (TAGA)n Simple_repeat Simple_repeat 4 145 0 4 1491 21 0 0 0 chr6 118833868 118833889 -30683148 + AT_rich Low_complexity Low_complexity 1 21 0 4 1491 470 99 44 0 chr6 118834852 118834943 -30682094 + (TC)n Simple_repeat Simple_repeat 1 95 0 4 1491 307 317 55 75 chr6 118836567 118836768 -30680269 + ORR1E LTR MaLR 1 197 -162 4 1491 216 0 0 0 chr6 118836969 118836993 -30680044 + (TCTG)n Simple_repeat Simple_repeat 2 25 0 4 1491 1121 286 120 57 chr6 118837329 118838011 -30679026 - L1MC4 LINE L1 0 8042 7318 4 1491 490 241 14 0 chr6 118838071 118838216 -30678821 + (TA)n Simple_repeat Simple_repeat 1 147 0 4 1491 233 279 124 47 chr6 118838351 118838520 -30678517 - L1MC4 LINE L1 -961 7081 6900 4 1491 4035 55 0 14 chr6 118838777 118839276 -30677761 + L1Md_F2 LINE L1 6091 6582 0 4 1491 198 0 0 0 chr6 118841556 118841578 -30675459 + (TGGGGG)n Simple_repeat Simple_repeat 6 27 0 4 1491 320 294 0 100 chr6 118841824 118841964 -30675073 + ID_B1 SINE B4 47 172 -52 4 1491 347 236 0 53 chr6 118841875 118841969 -30675068 + PB1D10 SINE Alu 7 95 -22 4 1491 277 198 68 137 chr6 118841879 118841996 -30675041 + MT2B2 LTR ERVL 175 283 -301 4 1491 212 277 14 58 chr6 118841968 118842037 -30675000 + ID4_ SINE ID 8 73 -10 4 1491 271 306 104 65 chr6 118843417 118843571 -30673466 + MIRb SINE MIR 78 237 -31 4 1491 2495 96 3 0 chr6 118844842 118845166 -30671871 + ORR1A2 LTR MaLR 1 325 -2 4 1491 188 86 0 28 chr6 118845838 118845874 -30671163 + (CAAAAA)n Simple_repeat Simple_repeat 4 38 0 4 1491 728 287 23 6 chr6 118846086 118846261 -30670776 - B3A SINE B2 -19 179 2 4 1491 311 352 20 33 chr6 118846491 118846641 -30670396 + L2a LINE L2 3024 3171 -255 4 1491 219 266 0 0 chr6 118847885 118847949 -30669088 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1491 431 249 220 42 chr6 118848443 118848611 -30668426 + B3A SINE B2 1 198 0 4 1491 261 346 53 23 chr6 118850149 118850282 -30666755 + ORR1E LTR MaLR 10 146 -213 4 1491 259 325 67 42 chr6 118850440 118850559 -30666478 + MLT1A1 LTR MaLR 286 407 -1 4 1491 1068 177 60 10 chr6 118850632 118850832 -30666205 - B3 SINE B2 -6 210 1 4 1491 279 314 80 23 chr6 118850858 118851034 -30666003 - L1MB3 LINE L1 -21 6150 5965 4 1491 789 273 96 54 chr6 118851071 118851458 -30665579 - L1MB3 LINE L1 -304 5879 5477 4 1491 21 36 0 0 chr6 118851466 118851494 -30665543 + AT_rich Low_complexity Low_complexity 1 28 0 4 1491 798 148 104 0 chr6 118851517 118851652 -30665385 - B1_Mur4 SINE Alu -1 149 1 4 1491 229 307 203 6 chr6 118852197 118852374 -30664663 - MIRc SINE MIR -53 215 4 4 1491 607 265 15 16 chr6 118853680 118853841 -30663196 + ID_B1 SINE B4 82 246 -46 4 1491 665 293 198 25 chr6 118853933 118854252 -30662785 - MTEa LTR MaLR -4 375 2 4 1491 332 254 0 0 chr6 118854478 118854545 -30662492 + ID4_ SINE ID 3 69 -14 4 1491 1948 150 44 49 chr6 118856306 118856692 -30660345 + ORR1C2 LTR MaLR 1 384 0 4 1491 333 229 0 24 chr6 118857265 118857350 -30659687 - L1MB3 LINE L1 -13 6170 6088 4 1491 189 0 0 0 chr6 118857675 118857696 -30659341 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1491 1128 295 44 48 chr6 118858965 118859488 -30657549 - L1MA9 LINE L1 -303 6009 5489 4 1491 1179 281 26 26 chr6 118859701 118860078 -30656959 - MTE2a LTR MaLR -2 377 1 4 1491 760 290 160 11 chr6 118860105 118860660 -30656377 + L1M3 LINE L1 4666 5303 -837 4 1491 185 292 0 0 chr6 118861370 118861418 -30655619 + MER5A DNA MER1_type 136 183 -6 4 1491 235 335 30 61 chr6 118861494 118861659 -30655378 + MIR3 SINE MIR 33 192 -16 4 1491 219 36 0 0 chr6 118862119 118862147 -30654890 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1491 203 361 12 0 chr6 118862927 118863010 -30654027 + MIR SINE MIR 179 262 0 4 1491 246 32 0 0 chr6 118863873 118863904 -30653133 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1491 787 288 83 18 chr6 118864698 118864974 -30652063 + MLT1B LTR MaLR 42 335 -55 4 1491 965 176 99 43 chr6 118866084 118866316 -30650721 + MTD LTR MaLR 175 419 0 4 1491 252 0 0 0 chr6 118866707 118866735 -30650302 + (CTCTG)n Simple_repeat Simple_repeat 2 29 0 4 1491 294 29 0 0 chr6 118867620 118867655 -30649382 + (TCC)n Simple_repeat Simple_repeat 3 37 0 4 1491 243 0 0 0 chr6 118868641 118868668 -30648369 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 4 1491 182 359 0 0 chr6 118868690 118868743 -30648294 + MER5B DNA MER1_type 1 53 -125 4 1491 234 225 0 0 chr6 118868752 118868792 -30648245 + G-rich Low_complexity Low_complexity 2 41 0 4 1491 1091 124 6 0 chr6 118868797 118868974 -30648063 + (GGA)n Simple_repeat Simple_repeat 3 180 0 4 1491 279 0 0 0 chr6 118868986 118869017 -30648020 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1491 237 288 80 21 chr6 118869702 118869839 -30647198 - MIRc SINE MIR -17 251 112 4 1491 415 294 0 44 chr6 118872543 118872703 -30644334 + G-rich Low_complexity Low_complexity 4 156 0 4 1491 207 375 45 11 chr6 118875318 118875407 -30641630 - MER5B DNA MER1_type -24 154 63 4 1491 347 323 8 46 chr6 118878873 118879003 -30638034 + MER5A1 DNA MER1_type 39 163 -3 4 1491 182 132 45 136 chr6 118879024 118879068 -30637969 - L2b LINE L2 -12 3363 3324 4 1491 335 342 33 13 chr6 118879392 118879543 -30637494 + MER5A1 DNA MER1_type 1 154 -12 4 1491 195 222 57 100 chr6 118880858 118880884 -30636153 - L2a LINE L2 -3 3423 3403 4 1491 702 0 0 0 chr6 118880884 118880962 -30636075 + (TATATG)n Simple_repeat Simple_repeat 4 81 0 4 1491 195 222 57 100 chr6 118880962 118881005 -30636032 - L2a LINE L2 -24 3402 3357 4 1492 484 256 100 30 chr6 118882537 118882767 -30634270 + RMER15 LTR ERVL 317 562 -13 4 1492 186 390 68 41 chr6 118883545 118883692 -30633345 + MIRb SINE MIR 54 204 -64 4 1492 182 91 0 29 chr6 118887097 118887131 -30629906 + (TTCTCC)n Simple_repeat Simple_repeat 6 38 0 4 1492 204 97 32 0 chr6 118887298 118887329 -30629708 + MIRc SINE MIR 117 148 -120 4 1492 225 0 0 0 chr6 118887623 118887648 -30629389 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1492 215 264 142 47 chr6 118888049 118888176 -30628861 - MIRm SINE MIR -115 161 23 4 1492 240 35 0 0 chr6 118889142 118889171 -30627866 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1492 506 176 12 0 chr6 118890432 118890517 -30626520 + B1_Mur1 SINE Alu 64 149 0 4 1492 326 224 0 15 chr6 118890525 118890593 -30626444 - PB1D9 SINE Alu -51 69 3 4 1492 319 382 104 30 chr6 118890640 118891231 -30625806 + L2a LINE L2 2804 3421 -5 4 1492 941 221 87 5 chr6 118891285 118891481 -30625556 + B3 SINE B2 1 212 -4 4 1492 609 311 129 12 chr6 118892728 118893112 -30623925 + Charlie1b DNA MER1_type 81 523 0 4 1492 453 259 71 0 chr6 118893404 118893516 -30623521 + ID_B1 SINE B4 79 198 -26 4 1492 194 256 121 20 chr6 118894229 118894332 -30622705 - MIR3 SINE MIR -70 198 86 4 1492 450 273 188 7 chr6 118894965 118895109 -30621928 + B3A SINE B2 1 170 -28 4 1492 504 0 0 0 chr6 118895113 118895169 -30621868 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1492 372 143 0 0 chr6 118895170 118895254 -30621783 + (GA)n Simple_repeat Simple_repeat 2 85 0 4 1492 1039 236 189 3 chr6 118896421 118896727 -30620310 + MTD LTR MaLR 2 364 -55 4 1492 576 111 0 0 chr6 118898033 118898123 -30618914 + (CA)n Simple_repeat Simple_repeat 2 91 0 4 1492 265 310 29 52 chr6 118898759 118898895 -30618142 - MIRb SINE MIR -83 185 53 4 1492 356 0 0 22 chr6 118899555 118899600 -30617437 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1492 263 176 62 5 chr6 118899982 118900062 -30616975 + MIRc SINE MIR 38 116 -146 4 1492 252 212 13 132 chr6 118900125 118900201 -30616836 - MIRc SINE MIR -82 186 120 4 1492 186 188 0 0 chr6 118900177 118900209 -30616828 - MIRm SINE MIR -130 146 115 4 1492 280 280 78 78 chr6 118900634 118900762 -30616275 + MIRc SINE MIR 29 156 -112 4 1492 306 50 0 0 chr6 118901840 118901880 -30615157 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1492 633 105 0 0 chr6 118902176 118902271 -30614766 + (TA)n Simple_repeat Simple_repeat 2 96 0 4 1492 587 245 155 57 chr6 118903755 118904019 -30613018 + B4A SINE B4 1 290 -2 4 1492 180 0 0 0 chr6 118904807 118904827 -30612210 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1492 479 116 0 44 chr6 118908361 118908396 -30608641 + polypurine Low_complexity Low_complexity 1 33 0 4 1492 243 0 0 0 chr6 118908396 118908423 -30608614 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1492 479 116 0 44 chr6 118908423 118908477 -30608560 + polypurine Low_complexity Low_complexity 34 86 0 4 1492 372 22 0 0 chr6 118909022 118909067 -30607970 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1492 191 333 70 32 chr6 118909097 118909283 -30607754 + L2a LINE L2 2795 2987 -432 5 1492 198 239 120 43 chr6 118909445 118909537 -30607500 + L2a LINE L2 3211 3309 -117 5 1492 998 326 102 30 chr6 118910045 118910516 -30606521 - MER44B DNA MER2_type -7 543 39 5 1492 265 330 110 0 chr6 118911206 118911324 -30605713 + MIR SINE MIR 123 253 -9 5 1492 787 234 14 0 chr6 118911342 118911487 -30605550 + B1_Mur1 SINE Alu 2 148 -1 5 1492 830 138 23 0 chr6 118911490 118911664 -30605373 + (TAGA)n Simple_repeat Simple_repeat 2 179 0 5 1492 268 200 0 30 chr6 118911901 118911968 -30605069 - Kanga1a DNA Tc2 -25 729 665 5 1492 476 296 132 16 chr6 118915059 118915248 -30601789 + MIRb SINE MIR 27 237 -31 5 1492 721 249 18 30 chr6 118916082 118916248 -30600789 - B3 SINE B2 0 216 53 5 1492 234 310 12 19 chr6 118917309 118917470 -30599567 + C-rich Low_complexity Low_complexity 3 162 0 5 1492 293 280 169 8 chr6 118917583 118917737 -30599300 - L1MA5 LINE L1 0 6300 6125 5 1492 249 195 94 10 chr6 118917752 118917954 -30599083 + RMER17D LTR ERVK 230 448 -441 5 1492 192 303 39 13 chr6 118918118 118918195 -30598842 + L2b LINE L2 3297 3375 0 5 1492 1209 61 0 0 chr6 118918469 118918616 -30598421 + B1_Mus2 SINE Alu 1 147 0 5 1492 192 77 0 0 chr6 118918618 118918644 -30598393 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1492 244 310 31 131 chr6 118918923 118919053 -30597984 - MIRb SINE MIR -42 234 118 5 1492 1018 289 105 28 chr6 118919757 118920057 -30596980 + MTEa LTR MaLR 1 312 -67 5 1492 798 31 0 0 chr6 118920057 118920154 -30596883 + (TCCC)n Simple_repeat Simple_repeat 3 99 0 5 1492 1018 289 105 28 chr6 118920154 118920205 -30596832 + MTEa LTR MaLR 313 378 -1 5 1492 363 223 0 0 chr6 118920821 118920933 -30596104 + (CA)n Simple_repeat Simple_repeat 2 113 0 5 1492 819 284 141 7 chr6 118921790 118922237 -30594800 - L1MB3 LINE L1 -5 6178 5672 5 1492 828 20 0 0 chr6 118922479 118922577 -30594460 + (TC)n Simple_repeat Simple_repeat 1 98 0 5 1492 508 235 191 17 chr6 118922643 118922816 -30594221 - B3 SINE B2 -13 203 1 5 1492 248 295 25 13 chr6 118924003 118924082 -30592955 - ID4_ SINE ID 0 83 4 5 1492 543 103 0 0 chr6 118924721 118924818 -30592219 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 5 1492 3031 271 94 32 chr6 118924837 118926048 -30590989 + Lx9 LINE L1 6341 7626 -18 5 1492 220 371 14 48 chr6 118927173 118927320 -30589717 - MIRb SINE MIR -1 267 126 5 1492 411 73 0 0 chr6 118930027 118930082 -30586955 + (TCCCC)n Simple_repeat Simple_repeat 5 59 0 5 1492 4786 35 5 2 chr6 118930753 118931318 -30585719 - L1Md_F2 LINE L1 -1 6581 6015 5 1492 561 52 0 0 chr6 118932131 118932208 -30584829 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1492 491 304 2 5 chr6 118933559 118933688 -30583349 + MLT1A0 LTR MaLR 250 386 -4 5 1492 421 263 76 0 chr6 118934359 118934477 -30582560 + MER121 Unknown Unknown 128 254 -158 5 1492 440 274 0 0 chr6 118937065 118937171 -30579866 + PB1D10 SINE Alu 12 117 0 5 1492 239 345 11 0 chr6 118937182 118937269 -30579768 + GA-rich Low_complexity Low_complexity 1 88 0 5 1492 378 337 43 11 chr6 118937386 118937572 -30579465 - MER20 DNA MER1_type -26 193 2 5 1492 268 288 134 16 chr6 118940539 118940666 -30576371 + Tigger16a DNA Tigger 709 850 -83 5 1492 747 190 14 7 chr6 118940897 118941035 -30576002 + B1_Mur3 SINE Alu 1 139 -10 5 1492 768 166 12 6 chr6 118941038 118941202 -30575835 + GA-rich Low_complexity Low_complexity 3 167 0 5 1492 216 86 0 0 chr6 118942285 118942320 -30574717 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1492 1111 287 94 32 chr6 118942867 118943367 -30573670 + Lx8 LINE L1 6906 7436 -37 5 1492 22 0 0 0 chr6 118943384 118943406 -30573631 + AT_rich Low_complexity Low_complexity 1 22 0 5 1492 2209 100 25 15 chr6 118943517 118943841 -30573196 + ORR1A2 LTR MaLR 1 327 0 5 1492 458 330 176 20 chr6 118944113 118944460 -30572577 + MLT1J2 LTR MaLR 48 448 0 5 1492 483 18 0 0 chr6 118945776 118945832 -30571205 + (TTA)n Simple_repeat Simple_repeat 2 57 0 5 1492 319 288 142 33 chr6 118946347 118946530 -30570507 - ORR1E LTR MaLR 0 359 157 5 1492 293 286 145 45 chr6 118946814 118946993 -30570044 + ORSL-2a DNA Tip100 13 209 -133 5 1492 336 309 54 43 chr6 118947032 118947218 -30569819 + ORSL-2b DNA Tip100 318 505 -3 5 1492 318 50 0 0 chr6 118947275 118947315 -30569722 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1492 1235 35 14 0 chr6 118948210 118948355 -30568682 + B1_Mm SINE Alu 1 147 0 5 1492 258 32 0 0 chr6 118948355 118948386 -30568651 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1492 372 304 47 20 chr6 118948567 118948715 -30568322 + MIRb SINE MIR 112 263 -5 5 1492 528 16 0 0 chr6 118949130 118949191 -30567846 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 5 1492 910 276 54 42 chr6 118949862 118950195 -30566842 - MLT1B LTR MaLR -46 344 8 5 1492 193 234 121 30 chr6 118950823 118950889 -30566148 + L2a LINE L2 3316 3387 -39 5 1492 960 114 0 0 chr6 118951332 118951508 -30565529 + (CA)n Simple_repeat Simple_repeat 2 177 0 5 1492 265 297 179 78 chr6 118952031 118952210 -30564827 - B3A SINE B2 0 198 2 5 1492 300 358 132 24 chr6 118952213 118952379 -30564658 + Tigger5 DNA MER2_type 36 219 -2187 5 1492 218 359 90 15 chr6 118953592 118953725 -30563312 - L3 LINE CR1 -42 4447 4305 5 1492 187 355 126 21 chr6 118954012 118954202 -30562835 - L3 LINE CR1 -544 3945 3736 5 1492 275 192 260 0 chr6 118955571 118955644 -30561393 + PB1 SINE Alu 5 96 -31 5 1492 1041 124 111 24 chr6 118956102 118956309 -30560728 + URR1A DNA MER1_type 2 226 0 5 1492 403 278 78 83 chr6 118957598 118957790 -30559247 - Lx8 LINE L1 -311 7162 6972 5 1492 766 267 104 43 chr6 118957789 118958067 -30558970 + Lx8 LINE L1 7177 7471 -2 5 1492 187 208 132 0 chr6 118958091 118958144 -30558893 + L2a LINE L2 2803 2862 -557 5 1492 270 0 0 0 chr6 118958144 118958174 -30558863 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1492 788 85 0 30 chr6 118958174 118958307 -30558730 - RMER17B LTR ERVK -495 463 335 5 1492 428 349 119 24 chr6 118958307 118958812 -30558225 + L2a LINE L2 2856 3408 -18 5 1492 5346 202 36 63 chr6 118959532 118961307 -30555730 + L1_Mur3 LINE L1 259 2029 -3851 5 1492 1261 34 7 0 chr6 118961307 118961454 -30555583 + B1_Mus1 SINE Alu 1 148 0 5 1492 5346 163 35 49 chr6 118961454 118961520 -30555517 + L1_Mur3 LINE L1 2030 2084 -3796 5 1492 267 31 0 0 chr6 118961520 118961552 -30555485 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 1492 5346 231 35 106 chr6 118961552 118961882 -30555155 + L1_Mur3 LINE L1 2078 2401 -3485 5 1492 737 223 16 31 chr6 118961882 118962082 -30554955 - B3 SINE B2 -2 191 1 5 1492 5346 231 35 106 chr6 118962082 118962383 -30554654 + L1_Mur3 LINE L1 2402 2698 -3188 5 1492 396 0 0 0 chr6 118962383 118962427 -30554610 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1492 2980 275 34 142 chr6 118962427 118962721 -30554316 + L1_Mur3 LINE L1 2699 3011 -2875 5 1492 1164 107 6 0 chr6 118962721 118962875 -30554162 + B2_Mm2 SINE B2 2 155 -40 5 1492 489 17 0 0 chr6 118962875 118962933 -30554104 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 5 1492 1164 107 6 0 chr6 118962933 118962946 -30554091 + B2_Mm2 SINE B2 156 169 -26 5 1492 706 170 125 19 chr6 118962972 118963188 -30553849 + L1_Mur3 LINE L1 3015 3253 -2627 5 1492 3712 200 31 111 chr6 118963182 118963689 -30553348 + Lx7 LINE L1 6734 7253 -443 5 1492 1740 94 0 0 chr6 118963689 118963924 -30553113 - L1Md_F2 LINE L1 0 6582 6348 5 1492 3712 200 31 111 chr6 118963924 118963940 -30553097 + Lx7 LINE L1 7254 7267 -429 5 1492 320 73 0 0 chr6 118963940 118963981 -30553056 + tRNA-Met_ tRNA tRNA 1 41 -35 5 1492 3712 200 31 111 chr6 118963981 118964463 -30552574 + Lx7 LINE L1 7268 7696 0 5 1492 360 318 45 26 chr6 118964477 118964632 -30552405 + L1MC5 LINE L1 7623 7780 -181 5 1492 306 188 15 30 chr6 118964624 118964690 -30552347 + L1MEg LINE L1 1865 1929 -4155 5 1492 607 190 7 7 chr6 118964690 118964828 -30552209 + GA-rich Low_complexity Low_complexity 4 141 0 5 1492 1620 0 0 0 chr6 118964829 118965009 -30552028 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1492 377 258 11 33 chr6 118965330 118965422 -30551615 + 5S rRNA rRNA 1 90 -31 5 1492 226 208 58 7 chr6 118965721 118965791 -30551246 - MIRc SINE MIR -71 197 116 5 1492 232 257 42 14 chr6 118966095 118966166 -30550871 + MER94 DNA AcHobo 2 74 -60 5 1492 366 23 0 0 chr6 118967211 118967254 -30549783 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 5 1492 180 291 18 18 chr6 118968240 118968296 -30548741 - MIRm SINE MIR -148 128 73 5 1492 1185 68 0 0 chr6 118969619 118969765 -30547272 + B1_Mus2 SINE Alu 2 147 0 5 1492 260 119 0 17 chr6 118969766 118969826 -30547211 + (CAAAAA)n Simple_repeat Simple_repeat 3 61 0 5 1492 235 344 96 24 chr6 118971876 118972043 -30544994 + L1MEb LINE L1 279 457 -5613 5 1492 547 260 116 7 chr6 118972057 118972204 -30544833 + RSINE1 SINE B4 3 165 0 5 1492 594 85 0 0 chr6 118972214 118972308 -30544729 + (GGAA)n Simple_repeat Simple_repeat 1 94 0 5 1492 1176 95 0 0 chr6 118972359 118972527 -30544510 + (TAGA)n Simple_repeat Simple_repeat 2 169 0 5 1492 910 231 10 15 chr6 118972956 118973158 -30543879 + B3 SINE B2 1 201 -15 5 1492 385 163 11 11 chr6 118973317 118973410 -30543627 + CT-rich Low_complexity Low_complexity 1 93 0 5 1492 424 303 18 0 chr6 118973410 118973519 -30543518 - ID_B1 SINE B4 -55 169 59 5 1492 245 146 21 0 chr6 118973846 118973894 -30543143 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1492 753 144 299 23 chr6 118974206 118974383 -30542654 - URR1A DNA MER1_type 0 226 1 5 1492 202 218 250 25 chr6 118974840 118974920 -30542117 - MIRb SINE MIR -10 258 161 5 1492 561 243 14 22 chr6 118975266 118975405 -30541632 - B1_Mur1 SINE Alu -10 139 2 5 1492 180 0 0 0 chr6 118976274 118976294 -30540743 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1492 582 288 48 53 chr6 118977111 118977186 -30539851 + ID_B1 SINE B4 17 222 0 5 1492 698 189 53 0 chr6 118977186 118977318 -30539719 + B1_Mur1 SINE Alu 10 148 -1 5 1492 207 349 0 0 chr6 118977458 118977521 -30539516 - MIRb SINE MIR -83 185 123 5 1492 456 333 31 6 chr6 118978387 118978550 -30538487 - Charlie19a DNA Charlie -216 170 4 6 1492 626 310 163 76 chr6 118978742 118978791 -30538246 - HAL1 LINE L1 -1230 1277 1233 6 1492 2001 129 24 59 chr6 118978791 118979128 -30537909 + ORR1A3 LTR MaLR 2 326 0 6 1492 626 310 163 76 chr6 118979128 118979580 -30537457 - HAL1 LINE L1 -1275 1232 732 6 1492 398 337 88 61 chr6 118979731 118980094 -30536943 - HAL1 LINE L1 -2013 494 122 6 1492 523 227 92 20 chr6 118980469 118980622 -30536415 + RSINE1 SINE B4 2 165 0 6 1492 735 183 0 0 chr6 118980748 118980928 -30536109 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1492 315 314 28 9 chr6 118980955 118981061 -30535976 - HAL1 LINE L1 -2355 152 45 6 1492 405 267 23 35 chr6 118981140 118981311 -30535726 - L1ME3B LINE L1 -21 6219 6051 6 1492 357 243 8 86 chr6 118981451 118981468 -30535569 - ID_B1 SINE B4 0 224 117 6 1492 403 250 30 0 chr6 118981468 118981568 -30535469 - B1F SINE Alu -11 138 36 6 1492 929 271 28 5 chr6 118982252 118982467 -30534570 + B4 SINE B4 1 220 -72 6 1492 405 0 0 0 chr6 118982510 118982555 -30534482 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1492 290 167 17 0 chr6 118982556 118982616 -30534421 + GA-rich Low_complexity Low_complexity 2 62 0 6 1492 244 235 124 0 chr6 118982717 118982799 -30534238 + ID4_ SINE ID 5 96 -56 6 1492 288 234 31 0 chr6 118983363 118983427 -30533610 - ID4 SINE ID -5 78 13 6 1492 323 307 102 83 chr6 118983642 118983908 -30533129 + L1MB3 LINE L1 5900 6182 -1 6 1492 1141 78 0 35 chr6 118985747 118985920 -30531117 + L1_Mus2 LINE L1 6400 6566 0 6 1492 224 231 228 13 chr6 118986087 118986166 -30530871 + MIRb SINE MIR 89 184 -84 6 1492 194 257 27 67 chr6 118986129 118986204 -30530833 - L3 LINE CR1 -1189 3300 3229 6 1492 585 0 0 0 chr6 118986629 118986694 -30530343 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1492 629 232 40 8 chr6 118986694 118986820 -30530217 - B1_Mur1 SINE Alu -11 138 9 6 1492 210 296 0 0 chr6 118988467 118988521 -30528516 + GA-rich Low_complexity Low_complexity 3 56 0 6 1492 189 308 6 144 chr6 118988756 118988923 -30528114 + MIRb SINE MIR 49 192 -76 6 1492 429 260 60 55 chr6 118991317 118991500 -30525537 - MIRc SINE MIR -4 264 81 6 1492 252 0 0 0 chr6 118993757 118993785 -30523252 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1492 394 309 35 21 chr6 118993814 118993956 -30523081 + MLT1C LTR MaLR 9 152 -315 6 1492 266 340 68 14 chr6 118994354 118994500 -30522537 - MIR3 SINE MIR -43 165 12 6 1492 1179 117 0 0 chr6 118994764 118994944 -30522093 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1492 212 0 0 35 chr6 118994944 118994972 -30522065 + (CCCCCT)n Simple_repeat Simple_repeat 3 30 0 6 1492 295 325 67 76 chr6 118995401 118995611 -30521426 + MIR SINE MIR 10 217 -45 6 1492 220 333 0 0 chr6 118995627 118995684 -30521353 + MIR SINE MIR 167 223 -39 6 1492 279 54 0 0 chr6 118997229 118997266 -30519771 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 1492 485 146 12 0 chr6 118997277 118997359 -30519678 - B1_Mur4 SINE Alu -20 130 48 6 1492 227 360 13 0 chr6 118997844 118997919 -30519118 + B4 SINE B4 1 76 -216 6 1492 513 88 0 0 chr6 118997923 118998003 -30519034 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1492 1179 69 0 0 chr6 119000984 119001129 -30515908 + B1_Mus2 SINE Alu 3 147 0 1 1492 228 35 0 0 chr6 119001130 119001159 -30515878 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 2 1492 852 148 34 0 chr6 119001459 119001608 -30515429 - URR1A DNA MER1_type -15 211 58 3 1492 2163 208 22 5 chr6 119003557 119003967 -30513070 - MTD LTR MaLR -2 417 1 4 1492 180 231 37 37 chr6 119004027 119004081 -30512956 - L3 LINE CR1 -1 4488 4435 5 1492 280 261 191 34 chr6 119004052 119004199 -30512838 - MIR3 SINE MIR -30 178 9 6 1492 262 289 41 58 chr6 119006384 119006505 -30510532 - MER5B DNA MER1_type -59 119 1 7 1492 244 350 24 32 chr6 119008473 119008597 -30508440 + MER117 DNA MER1_type 71 193 -4 8 1492 219 245 20 0 chr6 119009235 119009284 -30507753 + (CATG)n Simple_repeat Simple_repeat 3 52 0 9 1492 286 341 51 116 chr6 119010960 119011252 -30505785 + ORR1E LTR MaLR 87 359 0 1 1492 413 247 62 73 chr6 119011373 119011565 -30505472 + L2 LINE L2 2653 2842 -577 1 1492 763 258 32 0 chr6 119011803 119012074 -30504963 + Lx6 LINE L1 6269 6768 -692 1 1492 1797 296 9 33 chr6 119012076 119012652 -30504385 + Lx5 LINE L1 6486 7047 -3 1 1493 234 0 0 0 chr6 119013406 119013432 -30503605 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 1 1493 619 243 7 7 chr6 119013749 119013894 -30503143 - B1F SINE Alu 0 149 5 1 1493 397 336 14 0 chr6 119013939 119014079 -30502958 + Charlie5 DNA MER1_type 2 143 -2481 1 1493 180 97 0 0 chr6 119015296 119015327 -30501710 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1493 613 160 10 0 chr6 119015675 119015775 -30501262 + RMER15 LTR ERVL 475 575 0 1 1493 237 359 22 0 chr6 119015818 119015910 -30501127 + MIRb SINE MIR 114 207 -61 1 1493 1196 283 24 19 chr6 119016882 119017297 -30499740 + L1MB3 LINE L1 5484 5900 -283 2 1493 320 275 91 35 chr6 119017428 119017571 -30499466 + RMER15 LTR ERVL 336 486 -89 2 1493 448 279 44 31 chr6 119019123 119019282 -30497755 + MIR3 SINE MIR 47 207 -1 2 1493 420 92 61 0 chr6 119020326 119020424 -30496613 + (TCTG)n Simple_repeat Simple_repeat 2 105 0 2 1493 357 24 0 0 chr6 119020424 119020466 -30496571 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1493 558 0 0 0 chr6 119021155 119021217 -30495820 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1493 229 283 67 0 chr6 119021943 119022003 -30495034 + MLT1D LTR MaLR 132 195 -310 2 1493 294 228 76 0 chr6 119022128 119022207 -30494830 + MLT1D LTR MaLR 413 497 -8 2 1493 349 292 198 0 chr6 119022609 119022715 -30494322 - RSINE1 SINE B4 -37 128 2 2 1493 1431 254 77 20 chr6 119022748 119023243 -30493794 + L1MB2 LINE L1 5381 5903 -268 2 1493 442 251 92 0 chr6 119023283 119023446 -30493591 + L1MB2 LINE L1 5980 6157 -14 2 1493 390 331 35 12 chr6 119024316 119024487 -30492550 - MIR SINE MIR 0 262 88 2 1493 327 342 92 15 chr6 119025471 119025593 -30491444 + MLT1J2 LTR MaLR 238 371 -77 3 1493 186 43 0 0 chr6 119025593 119025616 -30491421 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3 1493 327 342 92 15 chr6 119025616 119025689 -30491348 + MLT1J2 LTR MaLR 372 448 0 3 1493 202 379 49 14 chr6 119026048 119026190 -30490847 - L2c LINE L2 -189 3198 3052 3 1493 326 266 51 34 chr6 119026348 119026465 -30490572 - L1MDa LINE L1 -4069 2564 2431 3 1493 552 350 74 40 chr6 119027012 119027604 -30489433 + L3 LINE CR1 3502 4113 -376 3 1493 855 238 28 44 chr6 119027671 119027922 -30489115 + B4A SINE B4 45 291 -1 3 1493 414 313 15 7 chr6 119028034 119028169 -30488868 + L3 LINE CR1 4217 4352 -137 3 1493 289 300 0 0 chr6 119028454 119028524 -30488513 + L2c LINE L2 3315 3384 -3 3 1493 181 227 0 43 chr6 119030205 119030251 -30486786 - L3 LINE CR1 -609 3880 3837 3 1493 309 365 47 29 chr6 119030597 119030769 -30486268 - L1MDa LINE L1 -4625 2008 1834 3 1493 348 274 170 89 chr6 119031041 119031265 -30485772 - L1MDa LINE L1 -5134 1499 1248 3 1493 354 83 0 0 chr6 119031567 119031615 -30485422 - MTEa LTR MaLR -325 54 7 3 1493 360 0 0 0 chr6 119032285 119032325 -30484712 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1493 473 44 0 14 chr6 119033286 119033355 -30483682 + (TTGG)n Simple_repeat Simple_repeat 4 71 0 4 1493 293 373 84 7 chr6 119034143 119034345 -30482692 + MIR SINE MIR 7 214 -48 4 1493 231 36 0 0 chr6 119035389 119035417 -30481620 + (TTA)n Simple_repeat Simple_repeat 3 30 0 4 1493 399 278 110 23 chr6 119035605 119035778 -30481259 - MER117 DNA MER1_type -5 192 5 4 1493 261 294 0 0 chr6 119036191 119036283 -30480754 + CT-rich Low_complexity Low_complexity 3 94 0 4 1493 1080 115 3 8 chr6 119036272 119036638 -30480399 + (TTCC)n Simple_repeat Simple_repeat 1 363 0 4 1493 293 268 201 47 chr6 119037548 119037697 -30479340 + ORR1E LTR MaLR 20 191 -168 4 1493 458 217 18 45 chr6 119040511 119040622 -30476415 - PB1D10 SINE Alu -7 110 3 4 1493 271 263 0 62 chr6 119041006 119041029 -30476008 + B4A SINE B4 69 86 -206 4 1493 318 222 178 20 chr6 119041029 119041130 -30475907 + PB1 SINE Alu 3 119 -1 5 1493 183 184 0 0 chr6 119041192 119041230 -30475807 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1493 776 292 59 14 chr6 119041441 119041719 -30475318 + B4A SINE B4 1 276 -16 5 1493 405 0 0 0 chr6 119042011 119042056 -30474981 + (GAAAA)n Simple_repeat Simple_repeat 2 46 0 5 1493 726 12 0 0 chr6 119042056 119042138 -30474899 + (GGGGA)n Simple_repeat Simple_repeat 3 85 0 5 1493 669 25 0 0 chr6 119042142 119042221 -30474816 + (GA)n Simple_repeat Simple_repeat 2 80 0 5 1493 356 311 38 0 chr6 119042644 119042750 -30474287 - PB1D7 SINE Alu -9 111 2 5 1493 262 328 85 15 chr6 119044799 119044929 -30472108 - ORR1E LTR MaLR -217 142 4 5 1493 2327 157 12 31 chr6 119046009 119046424 -30470613 - MTB_Mm LTR MaLR 0 407 1 5 1493 405 0 0 0 chr6 119046431 119046476 -30470561 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1493 513 0 0 0 chr6 119046478 119046535 -30470502 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1493 505 296 189 20 chr6 119046562 119046810 -30470227 - B4A SINE B4 0 292 3 6 1493 813 236 64 56 chr6 119046810 119047039 -30469998 - B4A SINE B4 -61 231 1 6 1493 282 315 11 0 chr6 119047400 119047492 -30469545 + Lx8 LINE L1 7230 7322 -151 6 1493 263 231 0 71 chr6 119047656 119047740 -30469297 - Lx8 LINE L1 -2 7471 7394 6 1493 506 327 7 7 chr6 119047747 119047898 -30469139 - Lx8 LINE L1 -208 7265 7115 6 1493 434 299 55 20 chr6 119048788 119048989 -30468048 + L1MB4 LINE L1 5922 6129 -51 6 1493 192 77 0 0 chr6 119049087 119049113 -30467924 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1493 879 70 0 0 chr6 119049113 119049227 -30467810 - B1_Mm SINE Alu 0 147 34 6 1493 24 0 0 0 chr6 119049240 119049264 -30467773 + AT_rich Low_complexity Low_complexity 1 24 0 6 1493 288 53 0 0 chr6 119049348 119049386 -30467651 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1493 24 32 0 0 chr6 119049386 119049417 -30467620 + AT_rich Low_complexity Low_complexity 1 31 0 7 1493 294 29 0 0 chr6 119049466 119049501 -30467536 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1493 392 286 86 0 chr6 119049560 119049700 -30467337 - Lx7 LINE L1 -428 7268 7117 7 1493 307 317 152 43 chr6 119049865 119050076 -30466961 + L1MB8 LINE L1 5945 6178 0 7 1493 466 257 0 66 chr6 119050083 119050204 -30466833 + PB1D10 SINE Alu 3 115 -2 7 1493 332 299 196 41 chr6 119050609 119050829 -30466208 + ORR1E LTR MaLR 1 254 -105 7 1493 333 47 0 0 chr6 119052508 119052551 -30464486 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1493 267 31 0 0 chr6 119054861 119054893 -30462144 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1493 22 0 0 0 chr6 119058364 119058386 -30458651 + GC_rich Low_complexity Low_complexity 1 22 0 7 1493 234 91 0 0 chr6 119058510 119058543 -30458494 + (CCG)n Simple_repeat Simple_repeat 3 35 0 7 1493 25 0 0 0 chr6 119058653 119058678 -30458359 + GC_rich Low_complexity Low_complexity 1 25 0 8 1493 234 0 0 0 chr6 119058684 119058710 -30458327 + (CCCG)n Simple_repeat Simple_repeat 1 26 0 8 1493 191 304 106 21 chr6 119060083 119060177 -30456860 + L2a LINE L2 3325 3426 0 8 1493 302 327 18 9 chr6 119060541 119060652 -30456385 - MIRb SINE MIR -30 238 127 8 1493 324 0 0 0 chr6 119061269 119061305 -30455732 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1493 829 231 83 4 chr6 119062143 119062461 -30454576 + MTEa LTR MaLR 3 363 -16 8 1493 437 310 147 25 chr6 119063417 119063773 -30453264 - MLT1D LTR MaLR -9 458 77 8 1493 459 0 0 0 chr6 119064158 119064209 -30452828 + (TTTTG)n Simple_repeat Simple_repeat 3 53 0 8 1493 1121 44 0 0 chr6 119064209 119064344 -30452693 - B1_Mus2 SINE Alu -12 135 1 8 1493 1129 202 14 9 chr6 119064446 119064661 -30452376 - B3 SINE B2 0 216 1 8 1493 680 296 61 7 chr6 119065892 119066186 -30450851 + L1MA4 LINE L1 5972 6286 -5 9 1493 337 223 94 102 chr6 119066222 119066436 -30450601 + Charlie2b DNA MER1_type 2307 2523 -259 9 1493 1002 158 21 26 chr6 119066436 119066625 -30450412 - B2_Mm2 SINE B2 -7 188 1 9 1493 337 223 94 102 chr6 119066625 119066655 -30450382 + Charlie2b DNA MER1_type 2524 2549 -233 9 1493 1026 215 140 13 chr6 119066673 119066988 -30450049 - ORR1D2 LTR MaLR -14 356 2 9 1493 297 97 14 27 chr6 119068294 119068368 -30448669 + (TTTG)n Simple_repeat Simple_repeat 4 76 0 9 1493 873 60 0 0 chr6 119068370 119068486 -30448551 - B1_Mus2 SINE Alu 0 147 32 9 1493 1211 160 24 19 chr6 119068500 119068710 -30448327 - B3 SINE B2 -4 212 2 9 1493 794 290 52 38 chr6 119069034 119069321 -30447716 + B4A SINE B4 2 292 0 9 1493 666 0 0 0 chr6 119069355 119069429 -30447608 + (GA)n Simple_repeat Simple_repeat 1 74 0 9 1493 278 281 298 0 chr6 119069432 119069553 -30447484 + RSINE1 SINE B4 1 157 -8 9 1493 1305 115 0 0 chr6 119070577 119071082 -30445955 + (TGGA)n Simple_repeat Simple_repeat 1 505 0 1 1493 189 0 0 0 chr6 119071292 119071313 -30445724 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1493 186 43 0 0 chr6 119071749 119071772 -30445265 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 1493 587 302 56 0 chr6 119072055 119072217 -30444820 - B3A SINE B2 -27 171 1 1 1493 231 36 0 0 chr6 119072564 119072592 -30444445 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1493 1205 54 0 0 chr6 119072592 119072739 -30444298 - B1_Mus1 SINE Alu 0 148 2 1 1493 1707 208 68 18 chr6 119072884 119073281 -30443756 + MTD LTR MaLR 1 417 -2 1 1493 433 261 0 13 chr6 119073417 119073572 -30443465 + (CA)n Simple_repeat Simple_repeat 2 154 0 1 1493 23 0 0 0 chr6 119073940 119073963 -30443074 + AT_rich Low_complexity Low_complexity 1 23 0 1 1493 501 17 0 0 chr6 119073963 119074021 -30443016 + (GGAAA)n Simple_repeat Simple_repeat 2 59 0 1 1493 1173 281 87 47 chr6 119074471 119074512 -30442525 + L1_Rod LINE L1 1469 1508 -4339 1 1493 221 0 35 0 chr6 119074512 119074541 -30442496 + (GAA)n Simple_repeat Simple_repeat 3 32 0 1 1493 1173 281 87 47 chr6 119074541 119074816 -30442221 + L1_Rod LINE L1 1509 1783 -4064 1 1493 260 27 0 26 chr6 119074816 119074854 -30442183 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 1 1493 1173 281 87 47 chr6 119074854 119075201 -30441836 + L1_Rod LINE L1 1784 2160 -3687 1 1493 3788 263 66 15 chr6 119075298 119076357 -30440680 + Lx8 LINE L1 6197 7309 -164 1 1493 1616 272 104 45 chr6 119076375 119076949 -30440088 + Lx8 LINE L1 6866 7473 0 1 1493 533 267 93 0 chr6 119077217 119077367 -30439670 + RSINE1 SINE B4 1 164 -1 1 1493 516 209 9 0 chr6 119077493 119077603 -30439434 + Lx7 LINE L1 7585 7695 -1 1 1493 468 355 21 11 chr6 119079051 119079239 -30437798 + L3b LINE CR1 220 409 -73 1 1493 205 149 41 41 chr6 119080147 119080196 -30436841 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 1 1493 260 210 97 0 chr6 119080210 119080272 -30436765 - L1MA4 LINE L1 -385 5915 5848 1 1493 226 284 0 29 chr6 119080442 119080511 -30436526 - ID4_ SINE ID -13 70 4 1 1493 230 310 57 11 chr6 119080513 119080601 -30436436 + L2c LINE L2 3286 3377 -10 1 1493 931 259 48 11 chr6 119081309 119081579 -30435458 + B4A SINE B4 1 280 -12 1 1493 218 245 0 19 chr6 119081588 119081642 -30435395 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1 1493 209 238 31 16 chr6 119082649 119082713 -30434324 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1493 254 212 65 43 chr6 119082772 119082910 -30434127 + (CA)n Simple_repeat Simple_repeat 2 142 0 1 1493 183 80 0 0 chr6 119082961 119082986 -30434051 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1493 399 41 0 0 chr6 119084133 119084182 -30432855 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1493 180 0 0 0 chr6 119084718 119084738 -30432299 + (ATG)n Simple_repeat Simple_repeat 1 20 0 1 1493 610 200 79 29 chr6 119084769 119084908 -30432129 - B1_Mur3 SINE Alu -2 147 2 1 1493 395 208 589 0 chr6 119085024 119085165 -30431872 + Lx7 LINE L1 6818 7041 -655 1 1493 5383 18 2 0 chr6 119085156 119085768 -30431269 + L1Md_T LINE L1 4974 5586 -297 1 1493 8617 29 6 0 chr6 119085768 119086758 -30430279 + L1Md_T LINE L1 5587 6582 0 1 1493 1180 238 79 42 chr6 119086762 119087296 -30429741 + Lx7 LINE L1 7025 7695 -1 1 1493 1178 68 0 0 chr6 119088433 119088580 -30428457 - B1_Mus1 SINE Alu -1 147 1 1 1493 542 271 39 82 chr6 119090195 119090452 -30426585 - MTEa LTR MaLR -133 246 1 1 1493 980 287 82 70 chr6 119090454 119090994 -30426043 - MTEa-int LTR MaLR -2 1578 1033 1 1493 1098 233 83 37 chr6 119090991 119091339 -30425698 - ORR1D2 LTR MaLR -6 364 1 1 1493 603 296 35 60 chr6 119091341 119091542 -30425495 - MTEa-int LTR MaLR -547 1033 838 1 1493 385 318 132 56 chr6 119091551 119091621 -30425416 + MLT2B3 LTR ERVL 326 393 -161 1 1493 1682 26 0 0 chr6 119091621 119091812 -30425225 - B2_Mm1a SINE B2 -1 192 2 1 1493 385 318 132 56 chr6 119091812 119091922 -30425115 + MLT2B3 LTR ERVL 394 522 -32 1 1493 306 0 0 0 chr6 119091922 119091956 -30425081 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 1 1493 385 318 132 56 chr6 119091956 119091987 -30425050 + MLT2B3 LTR ERVL 523 553 -1 1 1493 193 208 26 0 chr6 119093176 119093253 -30423784 + GA-rich Low_complexity Low_complexity 2 80 0 1 1493 277 130 0 49 chr6 119093242 119093323 -30423714 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 1 1493 266 212 48 12 chr6 119093298 119093465 -30423572 + GA-rich Low_complexity Low_complexity 2 174 0 1 1493 189 107 0 0 chr6 119093593 119093621 -30423416 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1493 328 313 40 33 chr6 119093888 119094040 -30422997 - MER45A DNA Tip100 0 178 26 1 1493 336 292 35 0 chr6 119094580 119094693 -30422344 + B1F1 SINE Alu 1 117 -32 1 1493 275 333 198 14 chr6 119095014 119095221 -30421816 + L3 LINE CR1 4244 4488 -1 1 1493 286 290 141 59 chr6 119095875 119096131 -30420906 + B4A SINE B4 2 278 -14 1 1493 779 277 21 8 chr6 119096502 119096739 -30420298 + ORR1E LTR MaLR 120 359 0 1 1493 697 262 120 8 chr6 119097019 119097277 -30419760 + MER63D DNA AcHobo 1 287 -774 1 1493 516 344 0 58 chr6 119097349 119097522 -30419515 + RSINE1 SINE B4 3 165 0 1 1493 2578 60 25 0 chr6 119097868 119098187 -30418850 + ORR1A2 LTR MaLR 1 327 0 1 1493 235 26 77 0 chr6 119098264 119098303 -30418734 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1493 1988 253 31 55 chr6 119098303 119098918 -30418119 + RMER19C LTR ERVK 12 611 0 1 1493 1120 102 11 6 chr6 119099222 119099400 -30417637 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1 1493 1033 292 68 51 chr6 119099602 119100221 -30416816 + L1_Rod LINE L1 1147 1766 -4081 1 1493 1155 44 0 0 chr6 119100221 119100358 -30416679 - B1_Mm SINE Alu -10 137 1 1 1493 1033 302 75 60 chr6 119100358 119100510 -30416527 + L1_Rod LINE L1 1767 1932 -3915 1 1493 1933 272 132 22 chr6 119100553 119101041 -30415996 + L1_Mur3 LINE L1 3263 3821 -2059 1 1493 852 164 27 14 chr6 119101041 119101189 -30415848 + B1_Mur4 SINE Alu 1 150 0 1 1493 1933 272 132 22 chr6 119101189 119101545 -30415492 + L1_Mur3 LINE L1 3822 4200 -1680 1 1493 427 182 13 0 chr6 119101590 119101667 -30415370 + B3A SINE B2 3 80 -118 1 1493 2130 155 96 2 chr6 119101678 119102161 -30414876 + RMER4B LTR ERVK 17 585 0 1 1493 484 286 7 60 chr6 119102161 119102301 -30414736 + B3 SINE B2 77 208 -8 1 1493 1691 297 68 30 chr6 119102321 119102771 -30414266 + L1_Mur3 LINE L1 4221 4698 -1182 1 1493 618 242 30 0 chr6 119102771 119102903 -30414134 + B1_Mur1 SINE Alu 3 138 -11 1 1493 1691 297 68 30 chr6 119102903 119103421 -30413616 + L1_Mur3 LINE L1 4699 5226 -654 1 1493 680 258 106 5 chr6 119104306 119104505 -30412532 + ID_B1 SINE B4 3 221 -3 1 1493 410 325 61 33 chr6 119105366 119105726 -30411311 + Lx8 LINE L1 901 1270 -6458 1 1493 5230 280 108 83 chr6 119105809 119109372 -30407665 + Lx8 LINE L1 1322 4974 -903 1 1493 1976 175 76 0 chr6 119109372 119109754 -30407283 + MTD LTR MaLR 1 411 -8 1 1493 2061 225 77 31 chr6 119109757 119110371 -30406666 + Lx8 LINE L1 4970 5611 -269 1 1493 844 249 97 30 chr6 119110371 119110737 -30406300 + MTC LTR MaLR 1 396 -11 1 1493 3842 288 55 62 chr6 119110755 119111047 -30405990 + Lx8 LINE L1 5609 5920 -1553 1 1493 1132 250 112 24 chr6 119111047 119111387 -30405650 + ORR1D2 LTR MaLR 1 370 0 1 1493 4665 283 70 55 chr6 119111387 119112930 -30404107 + Lx8 LINE L1 5921 7471 -2 1 1493 569 264 25 49 chr6 119112960 119113163 -30403874 + B3A SINE B2 1 198 0 1 1493 318 297 94 36 chr6 119115784 119115976 -30401061 - MIR SINE MIR -3 259 57 1 1493 509 319 58 5 chr6 119116591 119116780 -30400257 - MER58A DNA MER1_type -11 213 15 1 1493 1740 279 14 2 chr6 119116979 119117417 -30399620 - Lx7 LINE L1 -694 7002 6560 1 1493 1413 231 53 6 chr6 119117428 119117768 -30399269 + Lx7 LINE L1 6976 7331 -365 1 1493 378 61 0 0 chr6 119117815 119117864 -30399173 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1493 552 126 0 0 chr6 119117910 119117997 -30399040 + (TTTA)n Simple_repeat Simple_repeat 3 89 0 1 1493 794 182 7 40 chr6 119118003 119118152 -30398885 - B1_Mur3 SINE Alu -2 147 4 1 1493 27 0 0 0 chr6 119118262 119118289 -30398748 + AT_rich Low_complexity Low_complexity 1 27 0 1 1493 4959 207 50 22 chr6 119119446 119120381 -30396656 + Lx9 LINE L1 6505 7462 -182 1 1493 450 0 0 0 chr6 119120381 119120431 -30396606 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1493 4959 207 50 22 chr6 119120431 119120604 -30396433 + Lx9 LINE L1 7463 7644 0 1 1493 296 238 49 12 chr6 119123316 119123397 -30393640 + MER112 DNA MER1_type 4 87 -174 1 1493 216 0 0 0 chr6 119123398 119123422 -30393615 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1493 776 300 85 53 chr6 119123469 119123846 -30393191 + MT2A LTR ERVL 1 389 -144 1 1493 1069 273 134 23 chr6 119123882 119124440 -30392597 - Charlie1a DNA MER1_type -368 1087 468 1 1493 246 234 152 50 chr6 119124454 119124553 -30392484 + PB1D10 SINE Alu 3 111 -6 1 1493 764 110 15 0 chr6 119126593 119126729 -30390308 - URR1B DNA MER1_type 0 225 88 1 1493 249 108 0 0 chr6 119128181 119128218 -30388819 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1493 244 325 0 0 chr6 119129014 119129097 -30387940 - MER5A DNA MER1_type -106 83 1 1 1493 418 246 211 0 chr6 119132080 119132222 -30384815 - ID_B1 SINE B4 -2 222 51 1 1493 625 253 133 42 chr6 119134536 119134591 -30382446 + B4A SINE B4 5 72 -220 1 1493 405 0 0 0 chr6 119134591 119134636 -30382401 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1493 625 253 133 42 chr6 119134636 119134844 -30382193 + B4A SINE B4 73 292 0 1 1493 458 258 51 19 chr6 119135002 119135160 -30381877 + B4A SINE B4 115 277 -15 1 1493 640 268 71 75 chr6 119135551 119135833 -30381204 + B4 SINE B4 2 282 -10 1 1493 888 178 1 7 chr6 119135907 119136074 -30380963 + B3 SINE B2 1 155 -40 1 1493 399 21 0 0 chr6 119136074 119136122 -30380915 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1493 586 229 15 98 chr6 119136122 119136157 -30380880 + B2_Mm2 SINE B2 156 186 -9 1 1493 274 230 63 136 chr6 119136408 119136450 -30380587 + Charlie5 DNA MER1_type 2383 2422 -202 1 1493 276 30 0 0 chr6 119136450 119136483 -30380554 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 1 1493 274 230 63 136 chr6 119136483 119136519 -30380518 + Charlie5 DNA MER1_type 2423 2439 -185 1 1493 762 11 0 0 chr6 119136519 119136606 -30380431 + (GGAGA)n Simple_repeat Simple_repeat 5 91 0 1 1493 274 230 63 136 chr6 119136606 119136717 -30380320 + Charlie5 DNA MER1_type 2440 2559 -65 1 1493 450 0 0 0 chr6 119137640 119137690 -30379347 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1493 288 330 18 111 chr6 119137721 119137946 -30379091 - B4A SINE B4 -8 284 81 1 1493 207 297 31 0 chr6 119138006 119138070 -30378967 - MIRb SINE MIR -25 243 178 1 1493 1008 195 63 0 chr6 119138116 119138306 -30378731 + B3 SINE B2 2 203 -13 1 1493 206 62 0 30 chr6 119138637 119138670 -30378367 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 1 1493 539 160 104 0 chr6 119139577 119139683 -30377354 - B1_Mur3 SINE Alu -7 142 26 1 1493 614 167 200 0 chr6 119139791 119139911 -30377126 + B1_Mus1 SINE Alu 5 148 0 1 1493 807 225 52 16 chr6 119140075 119140269 -30376768 - B3 SINE B2 -6 210 10 1 1493 206 211 0 0 chr6 119140319 119140357 -30376680 + C-rich Low_complexity Low_complexity 2 39 0 2 1493 384 155 0 0 chr6 119144119 119144190 -30372847 + CT-rich Low_complexity Low_complexity 4 74 0 2 186 431 255 10 0 chr6 119144347 119144449 -30372588 + RSINE1 SINE B4 31 133 -32 2 1494 1005 79 50 0 chr6 119144946 119145086 -30371951 + B1_Mus1 SINE Alu 2 148 0 2 1494 272 175 0 16 chr6 119145257 119145321 -30371716 + GA-rich Low_complexity Low_complexity 2 64 0 2 1494 216 86 0 0 chr6 119147373 119147408 -30369629 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2 1494 275 0 0 28 chr6 119149122 119149158 -30367879 + (CACCC)n Simple_repeat Simple_repeat 2 36 0 2 1494 437 187 42 4 chr6 119151155 119151260 -30365777 + PB1D10 SINE Alu 10 127 0 2 1494 564 263 36 21 chr6 119151261 119151401 -30365636 + RSINE1 SINE B4 2 143 -22 2 1494 294 29 0 0 chr6 119151497 119151532 -30365505 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1494 253 326 32 32 chr6 119152007 119152102 -30364935 - RSINE1 SINE B4 -23 142 48 2 1494 1552 257 74 120 chr6 119152759 119153042 -30363995 - L1MA8 LINE L1 -6 6285 5972 2 1494 2389 89 108 0 chr6 119153042 119153413 -30363624 - IAPLTR2a LTR ERVK 0 411 1 2 1494 1552 257 74 120 chr6 119153413 119153971 -30363066 - L1MA8 LINE L1 -320 5971 5471 2 1494 634 188 225 0 chr6 119153971 119154131 -30362906 - B3A SINE B2 -1 197 2 2 1494 1552 257 74 120 chr6 119154131 119154229 -30362808 - L1MA8 LINE L1 -821 5470 5388 2 1494 389 147 44 0 chr6 119154616 119154684 -30362353 - Lx LINE L1 -665 5989 5919 2 1494 4283 117 42 14 chr6 119154687 119155346 -30361691 + Lx LINE L1 5977 6654 0 2 1494 312 27 0 0 chr6 119156048 119156085 -30360952 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1494 937 31 125 44 chr6 119156085 119156221 -30360816 - B1_Mm SINE Alu 0 147 1 2 1494 34830 45 25 7 chr6 119156646 119158783 -30358254 - L1Md_F2 LINE L1 0 6582 4535 2 1494 1237 27 7 0 chr6 119158783 119158929 -30358108 - B1_Mus2 SINE Alu 0 147 1 2 1494 34830 48 44 14 chr6 119158929 119161345 -30355692 - L1Md_F2 LINE L1 -1349 4534 1960 2 1494 207 0 0 0 chr6 119161345 119161368 -30355669 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1494 34830 103 34 21 chr6 119161368 119162883 -30354154 - L1Md_F2 LINE L1 -3924 1959 446 2 1494 953 192 118 93 chr6 119162906 119163228 -30353809 - Lx9 LINE L1 0 7644 7315 2 1494 1032 218 81 19 chr6 119163218 119163489 -30353548 + Lx9 LINE L1 5672 5959 -1685 2 1494 195 42 0 0 chr6 119164888 119164912 -30352125 + (CCA)n Simple_repeat Simple_repeat 1 24 0 2 1494 225 0 0 0 chr6 119166395 119166420 -30350617 + (TTTTTA)n Simple_repeat Simple_repeat 3 27 0 2 1494 237 359 94 0 chr6 119167020 119167148 -30349889 - LTR79 LTR ERVL -8 519 380 2 1494 260 149 149 0 chr6 119168435 119168482 -30348555 + RSINE1 SINE B4 3 56 -109 2 1494 330 182 46 115 chr6 119171442 119171529 -30345508 + ID4_ SINE ID 3 83 0 2 1494 268 306 0 34 chr6 119172576 119172664 -30344373 - MTEa LTR MaLR -14 365 281 2 1494 2029 163 141 3 chr6 119172773 119173143 -30343894 + MTC LTR MaLR 1 421 0 2 1494 230 281 108 69 chr6 119173147 119173277 -30343760 - MTEa LTR MaLR -224 135 1 2 1494 523 330 108 30 chr6 119173524 119173995 -30343042 + Lx8 LINE L1 6960 7467 -6 2 1494 203 284 125 40 chr6 119176305 119176502 -30340535 - L2b LINE L2 -255 3171 2975 2 1494 513 154 0 0 chr6 119178031 119178122 -30338915 + (CA)n Simple_repeat Simple_repeat 1 91 0 2 1494 228 271 0 0 chr6 119178480 119178539 -30338498 - MER94 DNA AcHobo -69 65 7 2 1494 309 254 64 80 chr6 119179976 119180164 -30336873 - MLT1C LTR MaLR -26 364 180 2 1494 807 127 0 0 chr6 119180180 119180388 -30336649 + (TC)n Simple_repeat Simple_repeat 1 208 0 2 1494 210 71 0 0 chr6 119180592 119180620 -30336417 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1494 506 270 170 16 chr6 119180629 119180817 -30336220 - MLT1C LTR MaLR -240 227 11 2 1494 547 232 72 7 chr6 119182186 119182325 -30334712 + MLT1L LTR MaLR 401 548 -62 2 1494 278 226 48 0 chr6 119182314 119182376 -30334661 + ORR1D2 LTR MaLR 306 370 0 2 1494 379 362 0 0 chr6 119182377 119182526 -30334511 + (TG)n Simple_repeat Simple_repeat 2 150 0 2 1494 452 264 19 0 chr6 119182532 119182638 -30334399 + ID_B1 SINE B4 115 222 -2 2 1494 545 267 0 0 chr6 119182795 119182941 -30334096 + Lx7 LINE L1 7140 7285 -411 2 1494 576 150 0 0 chr6 119182943 119183070 -30333967 + (TC)n Simple_repeat Simple_repeat 2 128 0 2 1494 797 0 11 0 chr6 119183073 119183166 -30333871 + (TG)n Simple_repeat Simple_repeat 2 95 0 2 1494 7891 102 3 4 chr6 119183526 119185431 -30331606 + L1_Mus4 LINE L1 4733 6636 0 2 1494 283 262 135 0 chr6 119185813 119185954 -30331083 + L1MB3 LINE L1 5826 5985 -198 2 1494 376 299 59 15 chr6 119188746 119188882 -30328155 - MTD LTR MaLR -277 142 1 2 1494 267 200 100 0 chr6 119189290 119189350 -30327687 - LTR16B1 LTR ERVL -2 478 413 2 1494 180 0 0 0 chr6 119189389 119189409 -30327628 + (GA)n Simple_repeat Simple_repeat 2 21 0 2 1494 399 21 0 0 chr6 119190267 119190315 -30326722 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1494 1530 221 102 26 chr6 119191692 119192074 -30324963 - MTD LTR MaLR 0 419 9 2 1494 261 270 65 43 chr6 119193126 119193219 -30323818 - MTEb LTR MaLR -13 366 272 2 1494 182 235 56 56 chr6 119193376 119193448 -30323589 + L2 LINE L2 2602 2673 -746 2 1494 201 341 18 18 chr6 119193784 119193954 -30323083 + (CA)n Simple_repeat Simple_repeat 1 170 0 2 1494 468 0 0 0 chr6 119194507 119194559 -30322478 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1494 752 272 41 0 chr6 119194789 119194984 -30322053 + B4A SINE B4 83 285 -7 2 1494 255 125 0 0 chr6 119194997 119195037 -30322000 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1494 1425 299 40 8 chr6 119195400 119195993 -30321044 - L1M3 LINE L1 -817 5323 4712 2 1494 386 327 52 75 chr6 119196003 119196215 -30320822 - ORR1E LTR MaLR 0 359 153 2 1494 764 236 83 10 chr6 119196217 119196410 -30320627 - B3 SINE B2 -9 207 1 2 1494 649 288 177 45 chr6 119196424 119197183 -30319854 - L1M3 LINE L1 -1722 4424 3544 2 1494 565 284 168 43 chr6 119197190 119197326 -30319711 - L1M3 LINE L1 -2727 3419 3269 2 1494 1546 43 16 0 chr6 119197326 119197512 -30319525 - B2_Mm2 SINE B2 -6 189 1 2 1494 565 284 168 43 chr6 119197512 119197702 -30319335 - L1M3 LINE L1 -2878 3268 3052 2 1494 1089 193 64 0 chr6 119197864 119198066 -30318971 - B3 SINE B2 0 216 2 2 1494 309 109 0 0 chr6 119198097 119198143 -30318894 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1494 354 45 0 0 chr6 119198156 119198200 -30318837 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2 1494 1174 64 0 0 chr6 119198206 119198346 -30318691 - B1_Mus1 SINE Alu -7 141 2 2 1494 1049 311 68 74 chr6 119198529 119199507 -30317530 - L1_Mur3 LINE L1 -15 5832 4935 2 1494 2867 18 61 0 chr6 119199507 119199833 -30317204 - ORR1A0 LTR MaLR 0 346 1 2 1494 1049 328 43 100 chr6 119199833 119200319 -30316718 - L1_Mur3 LINE L1 -946 4934 4484 2 1494 189 0 0 0 chr6 119200324 119200345 -30316692 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1494 2726 299 39 35 chr6 119200554 119201336 -30315701 - L1_Mur3 LINE L1 -1391 4489 3699 2 1494 662 172 172 0 chr6 119201336 119201458 -30315579 + B1_Mur2 SINE Alu 1 143 -6 2 1494 2726 299 39 35 chr6 119201458 119202032 -30315005 - L1_Mur3 LINE L1 -2182 3698 3128 2 1494 222 118 0 0 chr6 119202135 119202169 -30314868 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1494 472 270 11 79 chr6 119202176 119202319 -30314718 - B3A SINE B2 -14 202 71 2 1494 564 270 23 35 chr6 119202319 119202580 -30314457 - L1_Mur3 LINE L1 -2449 3431 3174 2 1494 22 0 0 0 chr6 119202580 119202602 -30314435 + AT_rich Low_complexity Low_complexity 1 22 0 2 1494 3422 288 52 74 chr6 119202615 119204159 -30312878 - Lx8 LINE L1 -185 7288 5779 2 1494 4053 240 125 32 chr6 119204162 119204856 -30312181 - Lx9 LINE L1 0 7644 6910 2 1494 1007 104 44 0 chr6 119204856 119204991 -30312046 + B1_Mus1 SINE Alu 2 142 -6 2 1494 203 0 37 0 chr6 119204994 119205021 -30312016 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1494 4053 240 125 32 chr6 119205021 119205517 -30311520 - Lx9 LINE L1 -735 6909 6332 2 1494 321 47 0 0 chr6 119205517 119205560 -30311477 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1494 4053 240 125 32 chr6 119205560 119205749 -30311288 - Lx9 LINE L1 -1313 6331 6133 2 1494 312 273 0 13 chr6 119205750 119205828 -30311209 - Lx9 LINE L1 -1685 5959 5883 2 1494 260 119 0 17 chr6 119205861 119205921 -30311116 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1494 2835 261 69 44 chr6 119205923 119206340 -30310697 - L1_Mur3 LINE L1 -15 5865 5467 2 1494 183 80 0 0 chr6 119206340 119206365 -30310672 + (CAT)n Simple_repeat Simple_repeat 1 25 0 2 1494 2835 261 69 44 chr6 119206365 119207097 -30309940 - L1_Mur3 LINE L1 -414 5466 4688 2 1494 482 284 91 76 chr6 119207101 119207168 -30309869 - L1M4c LINE L1 -4619 1765 1692 2 1494 414 39 0 0 chr6 119207168 119207220 -30309817 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1494 482 284 91 76 chr6 119207220 119207637 -30309400 - L1M4c LINE L1 -4693 1691 1275 2 1494 337 187 0 95 chr6 119207688 119207877 -30309160 + (CACTC)n Simple_repeat Simple_repeat 1 171 0 2 1494 1645 260 117 19 chr6 119207892 119208617 -30308420 - L1M4c LINE L1 -5176 1208 413 2 1494 1117 226 35 21 chr6 119208638 119208927 -30308110 - L1M4c LINE L1 -6074 310 18 2 1494 225 0 0 0 chr6 119209120 119209145 -30307892 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1494 333 0 0 0 chr6 119209145 119209181 -30307856 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1494 272 376 90 12 chr6 119209270 119209593 -30307444 - L1M5 LINE L1 -573 5667 5320 2 1494 509 145 68 8 chr6 119209701 119209799 -30307238 + ORR1B1 LTR MaLR 3 82 -312 2 1494 349 125 14 72 chr6 119209794 119209863 -30307174 + ORR1B1-int LTR MaLR 1444 1508 -1 2 1494 2395 118 28 120 chr6 119209863 119210095 -30306942 + ORR1B1 LTR MaLR 1 235 -159 2 1494 1138 62 0 52 chr6 119210095 119210248 -30306789 + B1_Mus2 SINE Alu 1 145 -2 2 1494 2395 118 28 120 chr6 119210248 119210449 -30306588 + ORR1B1 LTR MaLR 236 394 0 2 1494 414 306 0 9 chr6 119210486 119210595 -30306442 + B1F SINE Alu 2 109 -40 2 1494 329 93 19 0 chr6 119210595 119210649 -30306388 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1494 271 246 16 0 chr6 119210753 119210814 -30306223 + ID4_ SINE ID 22 83 0 2 1494 295 186 0 78 chr6 119211032 119211096 -30305941 + B1_Mus2 SINE Alu 1 59 -88 2 1494 612 200 0 0 chr6 119211101 119211271 -30305766 + GA-rich Low_complexity Low_complexity 2 171 0 2 1494 213 0 128 0 chr6 119211271 119211318 -30305719 + (CAGG)n Simple_repeat Simple_repeat 4 56 0 2 1494 674 171 0 18 chr6 119211321 119211434 -30305603 + B1_Mur1 SINE Alu 39 149 0 2 1494 1287 94 0 0 chr6 119211436 119211607 -30305430 + ORR1A2 LTR MaLR 155 325 -2 2 1494 1326 76 7 3 chr6 119211630 119211942 -30305095 + (GAAA)n Simple_repeat Simple_repeat 1 313 0 2 1494 371 326 127 55 chr6 119211943 119212180 -30304857 + L1M5 LINE L1 3439 3692 -2454 2 1494 325 123 31 0 chr6 119212215 119212280 -30304757 + GA-rich Low_complexity Low_complexity 2 68 0 2 1494 224 270 46 83 chr6 119212348 119212374 -30304663 - PB1D10 SINE Alu 0 117 74 2 1494 274 182 49 61 chr6 119212374 119212389 -30304648 - B4A SINE B4 -113 179 165 3 1494 574 250 13 34 chr6 119212389 119212538 -30304499 - RSINE1 SINE B4 -16 149 4 3 1494 224 270 46 83 chr6 119212538 119212605 -30304432 - PB1D10 SINE Alu -44 73 13 2 1494 681 289 28 17 chr6 119212735 119212911 -30304126 + B3A SINE B2 3 180 -18 3 1494 412 363 84 83 chr6 119213218 119213682 -30303355 - L1MEe LINE L1 -3830 2319 1855 3 1494 2742 84 16 5 chr6 119213682 119214063 -30302974 + L1_Mus4 LINE L1 6248 6632 -4 3 1494 412 363 84 83 chr6 119214063 119214154 -30302883 - L1MEe LINE L1 -4295 1854 1763 3 1494 257 0 0 29 chr6 119214611 119214645 -30302392 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1494 1211 96 11 25 chr6 119214648 119214925 -30302112 + (TG)n Simple_repeat Simple_repeat 1 272 0 3 1494 1101 283 7 14 chr6 119214947 119215227 -30301810 - B4A SINE B4 -14 278 1 3 1494 189 211 0 0 chr6 119215449 119215501 -30301536 + CT-rich Low_complexity Low_complexity 1 52 0 3 1494 498 191 44 35 chr6 119215502 119215616 -30301421 - PB1D9 SINE Alu -1 119 5 3 1494 576 0 0 0 chr6 119215617 119215681 -30301356 + (CTTG)n Simple_repeat Simple_repeat 2 65 0 3 1494 450 157 67 0 chr6 119215681 119215770 -30301267 - B1_Mur3 SINE Alu -11 138 44 3 1494 305 291 65 86 chr6 119215852 119216202 -30300835 - ORR1E LTR MaLR -13 366 9 3 1494 308 297 134 35 chr6 119216208 119216379 -30300658 - L1MEe LINE L1 -5288 831 644 3 1494 180 125 0 0 chr6 119216409 119216441 -30300596 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 3 1494 1269 35 0 0 chr6 119216797 119216942 -30300095 + B1_Mus2 SINE Alu 1 145 -2 3 1494 210 105 0 0 chr6 119216943 119216981 -30300056 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 3 1494 231 300 50 68 chr6 119218460 119218621 -30298416 - LTRIS2 LTR ERV1 -53 511 354 3 1494 191 282 48 60 chr6 119218719 119218802 -30298235 - L4 LINE RTE -543 1486 1405 3 1494 1685 21 0 16 chr6 119218872 119219066 -30297971 + B2_Mm1t SINE B2 1 191 -2 3 1494 1098 103 0 0 chr6 119219069 119219214 -30297823 + B1_Mus2 SINE Alu 1 145 -2 3 1494 397 305 0 28 chr6 119220316 119220424 -30296613 + PB1D10 SINE Alu 7 111 -6 3 1494 651 26 0 0 chr6 119220677 119220754 -30296283 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 1494 907 252 63 42 chr6 119222417 119222703 -30294334 - B4 SINE B4 0 292 1 3 1494 1125 111 0 0 chr6 119222777 119222949 -30294088 + (TG)n Simple_repeat Simple_repeat 1 172 0 3 1494 606 263 0 29 chr6 119222977 119223114 -30293923 - RSINE1 SINE B4 -30 135 3 3 1494 393 315 9 0 chr6 119223120 119223231 -30293806 - PB1D7 SINE Alu -2 118 7 3 1494 387 0 0 0 chr6 119223260 119223303 -30293734 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1494 212 273 15 15 chr6 119223360 119223427 -30293610 - L2a LINE L2 0 3426 3360 3 1494 1574 26 5 0 chr6 119223459 119223651 -30293386 - B2_Mm1a SINE B2 0 193 1 3 1494 261 203 123 15 chr6 119227966 119228031 -30289006 - MTEa LTR MaLR -18 361 290 3 1494 575 238 136 45 chr6 119228803 119228979 -30288058 + B3A SINE B2 7 198 0 3 1494 262 292 95 45 chr6 119230386 119230565 -30286472 + L3 LINE CR1 2046 2233 -2256 3 1494 240 200 0 0 chr6 119230589 119230644 -30286393 + GA-rich Low_complexity Low_complexity 2 56 0 3 1494 524 320 200 27 chr6 119231063 119231409 -30285628 + L3 LINE CR1 3962 4367 -122 3 1494 288 53 0 0 chr6 119231409 119231447 -30285590 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1494 524 320 200 27 chr6 119231447 119231549 -30285488 + L3 LINE CR1 4368 4488 -1 3 1494 188 323 135 0 chr6 119233534 119233630 -30283407 - MIR SINE MIR -70 192 84 3 1494 180 0 0 0 chr6 119233705 119233725 -30283312 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1494 1115 68 0 20 chr6 119233755 119233905 -30283132 - B1_Mus2 SINE Alu 0 147 1 3 1494 597 140 40 0 chr6 119234190 119234340 -30282697 + (TA)n Simple_repeat Simple_repeat 2 157 0 3 1494 269 275 56 9 chr6 119234340 119234451 -30282586 - Lx8 LINE L1 -1711 5933 5813 3 1494 468 238 86 4 chr6 119234637 119234773 -30282264 - L1MA4A LINE L1 -202 5954 5810 3 1494 468 0 0 0 chr6 119234787 119234839 -30282198 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1494 1499 84 185 15 chr6 119234893 119235284 -30281753 + RMER4A LTR ERVK 6 462 -4 3 1494 622 306 56 0 chr6 119235288 119235504 -30281533 - L1MA4A LINE L1 -548 5749 5522 3 1494 798 316 57 5 chr6 119235544 119235948 -30281089 - L1MA4A LINE L1 -921 5222 4798 3 1494 922 290 59 28 chr6 119235971 119236513 -30280524 - L1MA4A LINE L1 -2555 3588 3030 3 1494 226 307 87 82 chr6 119236521 119236565 -30280472 - B3 SINE B2 0 216 10 3 1494 513 271 25 68 chr6 119236565 119236727 -30280310 - RSINE1 SINE B4 0 165 11 3 1494 506 278 11 6 chr6 119236736 119236913 -30280124 - L1MA4A LINE L1 -3103 3040 2863 3 1494 584 316 13 0 chr6 119236950 119237105 -30279932 - RSINE1 SINE B4 -8 157 1 3 1494 644 321 54 50 chr6 119237188 119237746 -30279291 + L1M2 LINE L1 2950 3509 -2634 3 1494 1426 263 98 27 chr6 119237747 119238185 -30278852 + Lx8 LINE L1 6757 7225 -248 3 1494 2325 289 76 93 chr6 119238206 119238585 -30278452 + L1M2 LINE L1 3537 3953 -2190 3 1494 1602 165 131 12 chr6 119238585 119238736 -30278301 + ORR1C2 LTR MaLR 1 171 -213 3 1494 540 0 0 0 chr6 119238736 119238796 -30278241 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1494 1602 165 131 12 chr6 119238796 119238987 -30278050 + ORR1C2 LTR MaLR 172 383 -1 3 1494 2325 289 76 93 chr6 119238987 119239400 -30277637 + L1M2 LINE L1 3954 4374 -1769 3 1494 542 199 44 0 chr6 119239400 119239536 -30277501 + Lx3A LINE L1 6834 6975 -6 3 1494 2325 289 76 93 chr6 119239536 119240224 -30276813 + L1M2 LINE L1 4375 4992 -1151 3 1494 976 204 130 23 chr6 119240443 119240744 -30276293 - ORR1D1 LTR MaLR -39 335 3 3 1494 558 226 13 33 chr6 119240915 119240928 -30276109 - B1_Mur2 SINE Alu -1 148 138 3 1494 468 0 0 0 chr6 119240928 119240980 -30276057 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 3 1494 558 226 13 33 chr6 119240980 119241117 -30275920 - B1_Mur2 SINE Alu -12 137 1 3 1494 454 282 78 15 chr6 119241117 119241387 -30275650 + L1M2 LINE L1 5077 5363 -780 3 1494 687 157 9 0 chr6 119241580 119241695 -30275342 + B1_Mur1 SINE Alu 1 116 -33 3 1494 467 262 7 47 chr6 119241695 119241725 -30275312 + ID_B1 SINE B4 82 220 -4 3 1494 36 0 0 0 chr6 119241752 119241788 -30275249 + AT_rich Low_complexity Low_complexity 1 36 0 3 1494 702 313 48 124 chr6 119241788 119242173 -30274864 - L1MA4A LINE L1 -3312 2831 2452 3 1494 432 0 0 0 chr6 119242173 119242221 -30274816 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1494 419 313 48 124 chr6 119242221 119242545 -30274492 - L1MA4A LINE L1 -3429 2451 2156 3 1494 372 43 0 0 chr6 119242546 119242592 -30274445 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 3 1494 762 206 0 22 chr6 119242592 119242731 -30274306 - B1_Mur4 SINE Alu -8 142 7 3 1494 221 150 48 32 chr6 119242747 119242809 -30274228 + T-rich Low_complexity Low_complexity 4 66 0 3 1494 452 310 83 61 chr6 119242824 119242993 -30274044 - L1M2 LINE L1 -3992 2857 2682 3 1494 1333 84 5 5 chr6 119242993 119243184 -30273853 - B2_Mm1t SINE B2 0 193 3 3 1494 452 310 83 61 chr6 119243184 119243525 -30273512 - L1M2 LINE L1 -4168 2681 2331 3 1494 647 264 41 41 chr6 119243525 119243722 -30273315 - B3A SINE B2 0 198 2 3 1494 452 310 83 61 chr6 119243722 119243898 -30273139 - L1M2 LINE L1 -4519 2330 2155 3 1494 1141 55 0 14 chr6 119243937 119244085 -30272952 - B1_Mm SINE Alu -1 146 1 3 1494 633 105 0 0 chr6 119244145 119244240 -30272797 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 1494 229 401 0 22 chr6 119244484 119244619 -30272418 - Lx8 LINE L1 -87 7386 7255 3 1494 1054 69 0 0 chr6 119244651 119244795 -30272242 - B1_Mus1 SINE Alu 0 148 5 3 1494 256 335 128 17 chr6 119244796 119244975 -30272062 - Lx8 LINE L1 -220 7253 7055 3 1494 879 134 28 7 chr6 119245195 119245338 -30271699 - B1_Mus1 SINE Alu -2 146 1 3 1494 1980 262 61 68 chr6 119245349 119245483 -30271554 - L1_Mur3 LINE L1 -2415 3465 3337 3 1494 1357 70 0 16 chr6 119245483 119245671 -30271366 - B2_Mm2 SINE B2 -9 186 2 3 1494 1980 262 61 68 chr6 119245671 119246509 -30270528 - L1_Mur3 LINE L1 -2544 3336 2500 3 1494 198 91 0 0 chr6 119246969 119247002 -30270035 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1494 288 306 90 11 chr6 119247724 119247862 -30269175 + MIR SINE MIR 29 181 -87 3 1494 286 310 58 58 chr6 119247986 119248123 -30268914 + MER5B DNA MER1_type 28 164 -14 3 1494 295 358 33 7 chr6 119248967 119249119 -30267918 + MLT1B LTR MaLR 18 173 -217 3 1494 915 181 101 5 chr6 119249126 119249315 -30267722 + B3 SINE B2 2 208 -8 3 1494 762 43 0 0 chr6 119251096 119251190 -30265847 + (CA)n Simple_repeat Simple_repeat 1 94 0 3 1494 287 309 109 7 chr6 119251289 119251426 -30265611 + L1MB5 LINE L1 6024 6174 0 3 1494 283 253 83 92 chr6 119251833 119251847 -30265190 - PB1D10 SINE Alu -2 115 8 3 1494 464 200 84 0 chr6 119251847 119251942 -30265095 - ID_B1 SINE B4 -33 191 89 3 1494 497 284 237 0 chr6 119253091 119253327 -30263710 + B4A SINE B4 1 292 0 3 1494 323 270 0 0 chr6 119253565 119253639 -30263398 + ID4 SINE ID 2 75 -8 3 1494 387 0 0 0 chr6 119253641 119253684 -30263353 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1494 229 257 14 0 chr6 119253713 119253783 -30263254 + L1M2 LINE L1 4254 4324 -1819 3 1494 908 244 0 0 chr6 119253787 119253967 -30263070 + B3A SINE B2 1 180 -18 3 1494 28 29 0 0 chr6 119253992 119254027 -30263010 + AT_rich Low_complexity Low_complexity 1 35 0 3 1494 267 242 86 21 chr6 119254156 119254249 -30262788 + PB1D10 SINE Alu 12 110 -7 3 1494 429 20 0 0 chr6 119255903 119255953 -30261084 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1494 28 0 0 0 chr6 119256288 119256316 -30260721 + AT_rich Low_complexity Low_complexity 1 28 0 3 1494 284 252 177 23 chr6 119256437 119256567 -30260470 + L1MB8 LINE L1 6008 6157 -21 3 1494 213 39 0 0 chr6 119258425 119258451 -30258586 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1494 255 125 0 0 chr6 119259551 119259591 -30257446 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1494 251 301 46 68 chr6 119259874 119260051 -30256986 - MIRc SINE MIR -74 194 22 3 1494 1111 75 0 13 chr6 119261099 119261248 -30255789 + B1_Mus1 SINE Alu 2 148 0 3 1494 550 291 74 105 chr6 119261835 119262092 -30254945 + MTD LTR MaLR 13 261 -158 3 1494 224 196 3 19 chr6 119262780 119262839 -30254198 - MIR SINE MIR -137 139 80 3 1494 239 307 86 26 chr6 119262957 119263074 -30253963 - MIR SINE MIR -119 143 20 3 1494 285 75 0 0 chr6 119263976 119264016 -30253021 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 3 1494 189 94 0 0 chr6 119264251 119264283 -30252754 + (TCCTG)n Simple_repeat Simple_repeat 1 32 0 3 1494 327 25 0 0 chr6 119266325 119266365 -30250672 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1494 221 312 108 41 chr6 119268534 119268715 -30248322 + MIRb SINE MIR 48 247 -21 3 1494 443 250 202 0 chr6 119269040 119269208 -30247829 - MIR SINE MIR -25 237 36 4 1494 210 71 0 0 chr6 119269264 119269292 -30247745 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 4 1494 392 180 56 11 chr6 119269293 119269383 -30247654 - PB1D10 SINE Alu -10 107 14 4 1494 717 248 46 55 chr6 119269448 119269666 -30247371 + B3 SINE B2 1 216 0 4 1494 625 297 7 0 chr6 119269793 119269948 -30247089 + RSINE1 SINE B4 10 165 0 4 1494 261 256 0 0 chr6 119272352 119272434 -30244603 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 1494 239 287 114 38 chr6 119272487 119272592 -30244445 + PB1D10 SINE Alu 1 113 -4 4 1494 316 200 22 0 chr6 119272657 119272747 -30244290 + GA-rich Low_complexity Low_complexity 4 95 0 4 1494 446 129 183 0 chr6 119274977 119275070 -30241967 - B1_Mur1 SINE Alu -39 110 1 4 1495 190 0 67 0 chr6 119276605 119276635 -30240402 + (CCCCCG)n Simple_repeat Simple_repeat 6 37 0 4 1495 213 284 62 0 chr6 119277750 119277831 -30239206 - MIRc SINE MIR -7 261 176 4 1495 414 0 0 0 chr6 119279041 119279087 -30237950 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1495 423 244 25 78 chr6 119281795 119281911 -30235126 + RSINE1 SINE B4 1 117 -48 4 1495 414 0 0 0 chr6 119281919 119281965 -30235072 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1495 767 112 0 24 chr6 119282420 119282585 -30234452 + (TG)n Simple_repeat Simple_repeat 2 162 0 4 1495 200 200 0 24 chr6 119283645 119283686 -30233351 + G-rich Low_complexity Low_complexity 6 45 0 4 1495 331 219 5 58 chr6 119283686 119283875 -30233162 + GA-rich Low_complexity Low_complexity 1 179 0 4 1495 237 312 67 97 chr6 119283887 119284164 -30232873 - L2c LINE L2 -175 3251 2977 4 1495 393 22 0 0 chr6 119284411 119284457 -30232580 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1495 198 328 152 17 chr6 119285414 119285591 -30231446 + MIRb SINE MIR 68 268 0 4 1495 1017 123 0 2 chr6 119286819 119287224 -30229813 + (CA)n Simple_repeat Simple_repeat 1 404 0 4 1495 585 109 227 0 chr6 119289340 119289450 -30227587 - B1_Mus1 SINE Alu -12 136 2 4 1495 478 340 50 5 chr6 119289996 119290197 -30226840 - MER58B DNA MER1_type -131 210 1 4 1495 189 74 0 0 chr6 119290567 119290594 -30226443 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1495 238 267 218 0 chr6 119291576 119291677 -30225360 - MLT1J LTR MaLR -290 222 100 4 1495 333 0 0 0 chr6 119291959 119291996 -30225041 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1495 2119 121 59 0 chr6 119292239 119292545 -30224492 - ORR1A3 LTR MaLR 0 326 3 4 1495 1253 48 0 0 chr6 119292864 119293011 -30224026 + B1_Mm SINE Alu 1 147 0 4 1495 21 0 0 0 chr6 119293011 119293032 -30224005 + AT_rich Low_complexity Low_complexity 1 21 0 4 1495 316 313 39 52 chr6 119293073 119293228 -30223809 + HAL1-2a_MD LINE L1 2359 2511 -513 4 1495 236 54 54 0 chr6 119298970 119299007 -30218030 + (AGGGGG)n Simple_repeat Simple_repeat 2 40 0 4 1495 1171 37 0 0 chr6 119299759 119299893 -30217144 + B1_Mus2 SINE Alu 1 134 -13 4 1495 24 0 0 0 chr6 119299893 119299917 -30217120 + GC_rich Low_complexity Low_complexity 1 24 0 4 1495 300 259 85 12 chr6 119300586 119300668 -30216369 + PB1D7 SINE Alu 1 88 -32 4 1495 259 160 107 0 chr6 119300717 119300792 -30216245 + Lx9 LINE L1 7555 7637 -7 4 1495 798 301 54 25 chr6 119301092 119301334 -30215703 - B4A SINE B4 0 292 44 4 1495 691 170 59 0 chr6 119301392 119301527 -30215510 + B1_Mus1 SINE Alu 6 148 0 4 1495 288 325 55 55 chr6 119301527 119301546 -30215491 + B4A SINE B4 123 240 -52 4 1495 416 179 51 13 chr6 119302971 119303050 -30213987 - PB1D10 SINE Alu -7 110 29 4 1495 23 0 0 0 chr6 119306775 119306798 -30210239 + AT_rich Low_complexity Low_complexity 1 23 0 4 1495 552 163 0 0 chr6 119306829 119306915 -30210122 - B1_Mus1 SINE Alu -23 125 40 4 1495 1183 75 0 0 chr6 119306993 119307140 -30209897 - B1_Mus2 SINE Alu 0 147 1 4 1495 214 50 0 48 chr6 119307674 119307716 -30209321 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 4 1495 23 0 0 0 chr6 119308630 119308653 -30208384 + AT_rich Low_complexity Low_complexity 1 23 0 4 1495 586 235 115 11 chr6 119309774 119309956 -30207081 + ID_B1 SINE B4 48 248 -44 4 1495 549 129 195 57 chr6 119310183 119310306 -30206731 - B1_Mur1 SINE Alu -1 148 9 4 1495 356 227 99 202 chr6 119310306 119310422 -30206615 - B4 SINE B4 -59 229 16 4 1495 276 262 15 15 chr6 119310364 119310430 -30206607 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 4 1495 1253 41 7 0 chr6 119310554 119310699 -30206338 - B1_Mm SINE Alu 0 147 2 4 1495 745 283 82 17 chr6 119310699 119311122 -30205915 - L1M4 LINE L1 -692 5486 5042 4 1495 283 235 161 0 chr6 119311558 119311639 -30205398 + PB1 SINE Alu 33 126 -1 4 1495 216 0 0 0 chr6 119312298 119312322 -30204715 + (G)n Simple_repeat Simple_repeat 1 24 0 4 1495 350 229 148 104 chr6 119312442 119312518 -30204519 + MT2B LTR ERVL 97 266 -335 4 1495 924 74 8 0 chr6 119312518 119312639 -30204398 + B1_Mus2 SINE Alu 26 147 0 4 1495 350 229 148 104 chr6 119312639 119312677 -30204360 + MT2B LTR ERVL 267 356 -245 4 1495 380 321 49 58 chr6 119313524 119313631 -30203406 - MER2B DNA MER2_type 0 336 227 4 1495 264 59 0 0 chr6 119313631 119313665 -30203372 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1495 380 321 49 58 chr6 119313665 119313762 -30203275 - MER2B DNA MER2_type -110 226 134 4 1495 374 299 0 40 chr6 119313708 119313809 -30203228 - PB1 SINE Alu -3 124 28 4 1495 423 119 0 0 chr6 119313889 119313956 -30203081 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1495 409 247 36 194 chr6 119314014 119314208 -30202829 + MTE2a LTR MaLR 1 163 -216 4 1495 1253 284 31 39 chr6 119314208 119314564 -30202473 + MTE-int LTR MaLR 3 355 -1225 4 1495 429 248 45 27 chr6 119314539 119314651 -30202386 + MTE2a LTR MaLR 262 375 -4 4 1495 496 221 105 9 chr6 119315535 119315640 -30201397 + PB1D9 SINE Alu 1 115 -5 4 1495 308 284 111 40 chr6 119315795 119315894 -30201143 + RSINE1 SINE B4 45 150 -15 4 1495 309 118 0 0 chr6 119315988 119316039 -30200998 + (CGGA)n Simple_repeat Simple_repeat 2 52 0 4 1495 249 109 0 52 chr6 119316065 119316123 -30200914 + GA-rich Low_complexity Low_complexity 1 55 0 4 1495 282 106 0 0 chr6 119316134 119316181 -30200856 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 1495 796 167 68 8 chr6 119316504 119316637 -30200400 + B1_Mur1 SINE Alu 2 142 -7 4 1495 738 113 17 17 chr6 119318290 119318407 -30198630 - B1_Mur1 SINE Alu 0 149 33 4 1495 358 183 13 53 chr6 119318500 119318575 -30198462 - B1_Mur1 SINE Alu 0 149 78 4 1495 453 247 148 37 chr6 119318950 119319139 -30197898 + B3 SINE B2 1 210 -6 4 1495 763 102 37 45 chr6 119319265 119319399 -30197638 + B1_Mus2 SINE Alu 15 147 0 4 1495 214 225 0 0 chr6 119319423 119319463 -30197574 + B3A SINE B2 2 41 -157 4 1495 505 259 115 64 chr6 119319583 119319740 -30197297 + RSINE1 SINE B4 1 165 0 4 1495 288 0 0 0 chr6 119319752 119319784 -30197253 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1495 932 219 49 35 chr6 119319807 119320010 -30197027 + B3 SINE B2 9 214 -2 4 1495 21 57 0 0 chr6 119320051 119320086 -30196951 + AT_rich Low_complexity Low_complexity 1 35 0 4 1495 536 223 18 9 chr6 119320806 119320919 -30196118 + PB1D7 SINE Alu 6 119 -1 4 1495 933 228 41 0 chr6 119321740 119321937 -30195100 + B3 SINE B2 1 205 -11 4 1495 261 0 0 0 chr6 119322092 119322121 -30194916 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1495 307 191 30 60 chr6 119322329 119322396 -30194641 + ID4_ SINE ID 10 74 -9 4 1495 425 269 39 0 chr6 119322689 119322793 -30194244 + B1F SINE Alu 13 120 -29 4 1495 228 217 152 0 chr6 119322853 119322899 -30194138 + B1F SINE Alu 5 57 -92 4 1495 651 227 8 0 chr6 119322909 119323028 -30194009 + B1_Mur3 SINE Alu 1 120 -29 4 1495 366 303 52 29 chr6 119322913 119323049 -30193988 + ID_B1 SINE B4 86 224 0 4 1495 460 299 61 20 chr6 119323989 119324136 -30192901 + RSINE1 SINE B4 3 155 -10 4 1495 299 315 37 30 chr6 119324192 119324326 -30192711 + L1MC4 LINE L1 6478 6612 -1430 4 1495 353 253 44 44 chr6 119324379 119324470 -30192567 - RSINE1 SINE B4 -36 129 39 4 1495 407 219 149 16 chr6 119324472 119324593 -30192444 - MTD LTR MaLR -15 404 268 4 1495 387 326 53 0 chr6 119324708 119324840 -30192197 + L1M4b LINE L1 1237 1375 -5959 4 1495 1984 137 65 45 chr6 119324856 119325159 -30191878 + ORR1B2 LTR MaLR 1 312 -55 4 1495 1513 63 26 0 chr6 119325159 119325348 -30191689 + B2_Mm2 SINE B2 1 194 -1 4 1495 1984 137 65 45 chr6 119325348 119325396 -30191641 + ORR1B2 LTR MaLR 313 358 -9 4 1495 434 242 161 13 chr6 119325472 119325627 -30191410 + MLT1A LTR MaLR 197 374 0 4 1495 782 242 32 6 chr6 119325737 119325814 -30191223 + ID SINE ID 5 85 -139 4 1495 390 226 89 54 chr6 119325814 119325926 -30191111 + PB1D10 SINE Alu 1 116 -1 4 1495 3061 147 13 25 chr6 119326281 119326803 -30190234 + RMER20A LTR ERVK 1 516 0 4 1495 815 157 14 14 chr6 119326803 119326945 -30190092 - B1_Mus1 SINE Alu -1 147 6 4 1495 319 289 0 0 chr6 119326957 119327047 -30189990 - L1MB4 LINE L1 -4658 2091 2002 4 1495 429 215 53 18 chr6 119327047 119327205 -30189832 + B3A SINE B2 45 212 -4 4 1495 493 291 119 16 chr6 119327264 119327575 -30189462 - L1MB4 LINE L1 -4933 1816 1474 4 1495 198 0 0 0 chr6 119327630 119327652 -30189385 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1495 429 370 42 18 chr6 119327657 119327825 -30189212 + ORR1E LTR MaLR 60 231 -128 4 1495 434 67 0 16 chr6 119327890 119327951 -30189086 - URR1B DNA MER1_type 0 225 166 4 1495 1131 225 93 40 chr6 119327951 119328356 -30188681 + RLTR20D LTR ERVK 1 568 0 5 1495 538 125 0 0 chr6 119328357 119328445 -30188592 - URR1B DNA MER1_type -55 170 83 4 1495 229 167 0 0 chr6 119328459 119328495 -30188542 - URR1B DNA MER1_type -189 36 1 4 1495 385 212 27 12 chr6 119328495 119328580 -30188457 + ORR1E LTR MaLR 275 379 0 4 1495 521 241 146 8 chr6 119328599 119328846 -30188191 - L1MB4 LINE L1 -5151 1456 1176 4 1495 463 292 38 8 chr6 119328847 119328978 -30188059 + B1F SINE Alu 9 143 -6 5 1495 281 171 271 0 chr6 119329081 119329151 -30187886 + ID_B1 SINE B4 123 211 -13 5 1495 1378 265 27 18 chr6 119329394 119329725 -30187312 - MTE2b LTR MaLR -4 375 42 5 1495 429 231 16 57 chr6 119329934 119330058 -30186979 - PB1D7 SINE Alu 0 120 2 5 1495 575 233 15 52 chr6 119330114 119330250 -30186787 + B1F SINE Alu 17 147 -2 5 1495 797 144 0 8 chr6 119330383 119330502 -30186535 + B3 SINE B2 1 118 -98 5 1495 240 35 0 0 chr6 119330517 119330546 -30186491 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 5 1495 23 0 0 0 chr6 119330566 119330589 -30186448 + AT_rich Low_complexity Low_complexity 1 23 0 5 1495 1094 98 0 7 chr6 119330596 119330740 -30186297 + B1_Mus2 SINE Alu 2 144 -3 5 1495 330 26 0 0 chr6 119330740 119330779 -30186258 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 5 1495 441 304 87 8 chr6 119330839 119330965 -30186072 - ID_B1 SINE B4 -9 215 80 5 1495 394 250 12 0 chr6 119331277 119331361 -30185676 - B3 SINE B2 -131 85 1 5 1495 289 247 259 0 chr6 119331449 119331534 -30185503 + PB1D9 SINE Alu 2 108 -12 5 1495 469 229 90 35 chr6 119331613 119331758 -30185279 + MLT1B LTR MaLR 237 389 -1 5 1495 643 151 24 32 chr6 119331807 119331930 -30185107 - B1_Mus1 SINE Alu -1 147 26 5 1495 235 245 69 78 chr6 119331853 119331955 -30185082 - MT2B LTR ERVL -347 254 154 5 1495 259 250 54 0 chr6 119332284 119332340 -30184697 + ID4_ SINE ID 19 77 -6 5 1495 25 0 0 0 chr6 119332438 119332463 -30184574 + AT_rich Low_complexity Low_complexity 1 25 0 5 1495 623 209 0 9 chr6 119332477 119332588 -30184449 - RSINE1 SINE B4 -49 116 7 5 1495 1145 57 21 0 chr6 119332612 119332753 -30184284 + B1_Mus2 SINE Alu 4 147 0 5 1495 4435 102 18 6 chr6 119332847 119333506 -30183531 + RLTR22_Mur LTR ERVK 1 667 -1181 5 1495 182 205 0 25 chr6 119333859 119333899 -30183138 + L3b LINE CR1 269 307 -175 5 1495 327 264 55 36 chr6 119334257 119334367 -30182670 - PB1D7 SINE Alu -2 118 7 5 1495 792 265 148 37 chr6 119334921 119335164 -30181873 - B4 SINE B4 -8 284 15 5 1495 566 217 8 16 chr6 119335188 119335310 -30181727 - ID_B1 SINE B4 0 224 104 5 1495 320 291 32 19 chr6 119335541 119335652 -30181385 + PB1D10 SINE Alu 3 124 -3 5 1495 360 200 0 0 chr6 119335717 119335792 -30181245 + A-rich Low_complexity Low_complexity 1 75 0 5 1495 446 228 12 3 chr6 119335827 119335935 -30181102 + B3A SINE B2 93 203 -13 5 1495 465 219 57 9 chr6 119336126 119336232 -30180805 - PB1D7 SINE Alu -8 112 2 5 1495 567 313 43 38 chr6 119336260 119336469 -30180568 - MER58A DNA MER1_type -14 210 1 5 1495 768 160 24 0 chr6 119337010 119337135 -30179902 + B1_Mus1 SINE Alu 7 134 -14 5 1495 283 301 78 46 chr6 119337014 119337167 -30179870 + B4A SINE B4 95 252 -40 5 1495 459 242 43 86 chr6 119337509 119337672 -30179365 + RSINE1 SINE B4 9 164 -1 5 1495 24 53 0 0 chr6 119337685 119337723 -30179314 + AT_rich Low_complexity Low_complexity 1 38 0 5 1495 28 48 0 0 chr6 119338343 119338385 -30178652 + GC_rich Low_complexity Low_complexity 1 42 0 5 1495 22 80 0 0 chr6 119338427 119338477 -30178560 + GC_rich Low_complexity Low_complexity 1 50 0 5 1495 192 77 0 0 chr6 119338661 119338687 -30178350 + (CCG)n Simple_repeat Simple_repeat 3 28 0 5 1495 243 61 0 0 chr6 119338711 119338744 -30178293 + (CCG)n Simple_repeat Simple_repeat 3 35 0 5 1495 446 246 25 34 chr6 119339547 119339665 -30177372 + B1F2 SINE Alu 33 149 0 5 1495 186 133 0 0 chr6 119339667 119339697 -30177340 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 5 1495 547 238 28 7 chr6 119339978 119340122 -30176915 + B1F1 SINE Alu 3 149 0 5 1495 251 328 0 16 chr6 119340641 119340703 -30176334 - ID4 SINE ID -2 81 21 5 1495 309 302 85 0 chr6 119340717 119340823 -30176214 - RSINE1 SINE B4 -46 119 5 5 1495 490 184 442 0 chr6 119341337 119341484 -30175553 - B3 SINE B2 -4 212 1 5 1495 288 0 0 0 chr6 119341655 119341687 -30175350 + (TAA)n Simple_repeat Simple_repeat 3 34 0 5 1495 394 301 10 0 chr6 119342037 119342140 -30174897 + RSINE1 SINE B4 54 157 -8 5 1495 380 265 36 158 chr6 119342317 119342456 -30174581 + B4A SINE B4 1 122 -170 5 1495 486 172 11 33 chr6 119342461 119342551 -30174486 - B3 SINE B2 -128 88 1 5 1495 494 237 158 0 chr6 119342586 119342700 -30174337 + B4A SINE B4 145 276 -16 5 1495 498 132 131 9 chr6 119343432 119343539 -30173498 - PB1D9 SINE Alu 0 120 1 5 1495 382 286 59 0 chr6 119343934 119344053 -30172984 + B1F2 SINE Alu 17 142 -7 5 1495 335 281 30 83 chr6 119343936 119344060 -30172977 + ID_B1 SINE B4 100 217 -7 5 1495 846 137 71 14 chr6 119344060 119344201 -30172836 + B1_Mur3 SINE Alu 1 149 0 5 1495 536 248 24 53 chr6 119344247 119344417 -30172620 + RSINE1 SINE B4 1 165 0 5 1495 522 174 26 5 chr6 119344589 119344686 -30172351 + PB1D7 SINE Alu 28 125 -24 5 1495 39 38 0 0 chr6 119344710 119344763 -30172274 + AT_rich Low_complexity Low_complexity 1 53 0 5 1495 228 352 84 19 chr6 119344873 119344980 -30172057 - B1F SINE Alu -35 114 1 5 1495 1375 82 33 0 chr6 119345142 119345325 -30171712 - B2_Mm2 SINE B2 -6 189 1 5 1495 247 260 96 72 chr6 119345366 119345449 -30171588 - PB1 SINE Alu -15 112 28 5 1495 252 234 16 0 chr6 119346149 119346213 -30170824 + ID4 SINE ID 5 69 -14 5 1495 234 0 0 0 chr6 119346221 119346247 -30170790 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1495 225 0 0 0 chr6 119346653 119346678 -30170359 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1495 489 303 0 0 chr6 119346696 119346805 -30170232 - B1F1 SINE Alu -35 114 6 5 1495 366 171 118 0 chr6 119346829 119346905 -30170132 - MIR SINE MIR -115 147 63 5 1495 1161 48 7 0 chr6 119347178 119347323 -30169714 - B1_Mus2 SINE Alu 0 147 2 5 1495 877 169 27 13 chr6 119347475 119347625 -30169412 - B3A SINE B2 -45 153 2 5 1495 623 283 0 28 chr6 119347709 119347774 -30169263 - B1F2 SINE Alu -7 142 80 5 1495 4856 50 5 2 chr6 119347774 119348359 -30168678 + LTRIS_Mus LTR ERV1 1 587 0 5 1495 623 283 0 28 chr6 119348359 119348435 -30168602 - B1F2 SINE Alu -70 79 5 5 1495 1313 115 16 5 chr6 119348494 119348687 -30168350 + B2_Mm2 SINE B2 1 195 0 5 1495 1164 62 0 27 chr6 119348687 119348837 -30168200 + B1_Mus1 SINE Alu 3 148 0 5 1495 4831 251 50 81 chr6 119348878 119349033 -30168004 + Lx5 LINE L1 5587 5744 -1306 5 1495 225 0 0 0 chr6 119349033 119349058 -30167979 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 1495 4831 251 50 81 chr6 119349058 119350395 -30166642 + Lx5 LINE L1 5745 7031 -19 5 1495 904 115 8 0 chr6 119350460 119350590 -30166447 + B1_Mus1 SINE Alu 18 148 0 5 1495 1656 26 11 0 chr6 119351139 119351329 -30165708 + B2_Mm1a SINE B2 2 193 0 5 1495 440 248 0 10 chr6 119351429 119351531 -30165506 + B1_Mur1 SINE Alu 42 142 -7 5 1495 392 211 176 92 chr6 119351611 119351806 -30165231 - MTE2b LTR MaLR -14 405 194 5 1495 868 147 28 7 chr6 119351798 119351942 -30165095 - B1_Mus2 SINE Alu 0 147 1 5 1495 293 274 116 0 chr6 119351976 119352071 -30164966 - MTE2b LTR MaLR -311 108 3 5 1495 189 0 0 0 chr6 119352092 119352113 -30164924 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 5 1495 1010 279 88 7 chr6 119352122 119352429 -30164608 + Lx8 LINE L1 6305 6636 -837 5 1495 340 254 0 0 chr6 119352430 119352501 -30164536 - ID SINE ID -153 71 1 5 1495 226 258 0 31 chr6 119352501 119352565 -30164472 + PB1D10 SINE Alu 56 117 0 5 1495 578 279 12 113 chr6 119352669 119352916 -30164121 + B4 SINE B4 2 223 -69 5 1495 870 145 7 0 chr6 119352780 119352918 -30164119 + B1_Mus2 SINE Alu 9 147 0 5 1495 255 246 0 42 chr6 119352952 119353024 -30164013 + ID4_ SINE ID 13 81 -2 5 1495 570 231 58 37 chr6 119353229 119353418 -30163619 + B3A SINE B2 5 197 -1 5 1495 364 253 227 80 chr6 119353639 119353802 -30163235 - B3A SINE B2 -10 188 2 5 1495 379 75 0 0 chr6 119353847 119353914 -30163123 - MT2A LTR ERVL 0 533 467 5 1495 381 135 34 0 chr6 119353914 119354003 -30163034 + (TA)n Simple_repeat Simple_repeat 1 92 0 5 1495 2074 192 73 17 chr6 119354029 119354496 -30162541 - MT2A LTR ERVL -40 493 1 5 1495 271 262 0 0 chr6 119354918 119354979 -30162058 - B3 SINE B2 -92 124 64 5 1495 300 105 0 240 chr6 119355086 119355161 -30161876 + B3A SINE B2 1 57 -141 5 1495 454 215 86 0 chr6 119355765 119355858 -30161179 + B1F1 SINE Alu 11 111 -38 5 1495 340 324 39 0 chr6 119356225 119356327 -30160710 + B1F1 SINE Alu 4 109 -40 5 1495 533 262 128 38 chr6 119356336 119356602 -30160435 + B4A SINE B4 2 291 -1 5 1495 435 227 92 15 chr6 119356615 119356745 -30160292 + L1M4 LINE L1 4611 4750 -1396 5 1495 679 213 0 84 chr6 119356749 119356928 -30160109 + ID_B1 SINE B4 61 224 0 5 1495 324 160 0 0 chr6 119356933 119356983 -30160054 + B1F2 SINE Alu 27 76 -73 5 1495 269 93 0 0 chr6 119357059 119357102 -30159935 + B3 SINE B2 173 215 -1 5 1495 1105 43 0 28 chr6 119357255 119357397 -30159640 + B1_Mus2 SINE Alu 9 146 -1 5 1495 290 162 176 59 chr6 119357537 119357622 -30159415 - B1_Mur1 SINE Alu 0 149 55 5 1495 395 298 98 8 chr6 119357771 119357903 -30159134 + B1F2 SINE Alu 1 144 -5 5 1495 351 285 78 48 chr6 119357945 119358111 -30158926 - ORR1E LTR MaLR -179 180 10 5 1495 224 160 17 47 chr6 119358288 119358347 -30158690 - B1F2 SINE Alu -77 72 22 5 1495 380 240 152 32 chr6 119358308 119358433 -30158604 - ID_B1 SINE B4 -84 140 1 5 1495 297 0 0 0 chr6 119358671 119358704 -30158333 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1495 646 250 0 0 chr6 119359108 119359224 -30157813 - B3 SINE B2 -98 118 3 6 1495 539 270 7 7 chr6 119359247 119359396 -30157641 - B1_Mur1 SINE Alu 0 149 1 6 1495 303 164 62 18 chr6 119359405 119359517 -30157520 + CT-rich Low_complexity Low_complexity 3 119 0 6 1495 948 115 58 0 chr6 119359526 119359665 -30157372 - B1_Mus1 SINE Alu 0 148 2 6 1495 210 349 0 0 chr6 119359677 119359743 -30157294 - ID4_ SINE ID -3 80 15 6 1495 457 264 38 38 chr6 119360233 119360377 -30156660 - PB1D10 SINE Alu -6 141 2 6 1495 1342 216 110 18 chr6 119360487 119360869 -30156168 + MTD LTR MaLR 3 419 0 6 1495 351 198 114 38 chr6 119361023 119361128 -30155909 - PB1D9 SINE Alu -7 113 1 6 1495 256 213 47 47 chr6 119361154 119361218 -30155819 - RSINE1 SINE B4 -100 65 2 6 1495 262 308 58 71 chr6 119361233 119361359 -30155678 - PB1 SINE Alu 0 127 1 6 1495 379 260 64 16 chr6 119361637 119361762 -30155275 + B1F SINE Alu 12 142 -7 6 1495 788 322 41 72 chr6 119361781 119362072 -30154965 + B4A SINE B4 7 288 -4 6 1495 346 85 34 0 chr6 119362083 119362142 -30154895 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1495 403 217 0 14 chr6 119362165 119362235 -30154802 - PB1D7 SINE Alu -26 94 26 6 1495 690 196 72 0 chr6 119362377 119362515 -30154522 - B1F1 SINE Alu -1 148 1 6 1495 360 0 0 0 chr6 119362926 119362966 -30154071 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1495 404 41 0 0 chr6 119363038 119363087 -30153950 - ORR1B1 LTR MaLR -2 392 344 6 1495 494 103 0 11 chr6 119363087 119363175 -30153862 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 6 1495 790 105 0 0 chr6 119363194 119363299 -30153738 - B3 SINE B2 -111 105 1 6 1495 223 109 73 0 chr6 119363327 119363382 -30153655 + T-rich Low_complexity Low_complexity 2 60 0 6 1495 2209 116 39 3 chr6 119363388 119363724 -30153313 - ORR1B1 LTR MaLR -46 348 1 6 1495 258 178 133 27 chr6 119364720 119364795 -30152242 + PB1D9 SINE Alu 30 112 -8 6 1495 1486 214 44 68 chr6 119365234 119365646 -30151391 + MTD LTR MaLR 18 419 0 6 1495 363 44 0 0 chr6 119365752 119365797 -30151240 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1495 561 83 0 0 chr6 119366120 119366204 -30150833 + (GA)n Simple_repeat Simple_repeat 1 84 0 6 1495 1235 34 0 7 chr6 119366325 119366472 -30150565 - B1_Mus2 SINE Alu 0 147 2 6 1495 715 133 8 8 chr6 119367753 119367882 -30149155 + (TCCCC)n Simple_repeat Simple_repeat 3 131 0 6 1495 569 68 133 22 chr6 119367891 119367981 -30149056 - B1_Mus2 SINE Alu -1 146 47 6 1495 239 204 20 0 chr6 119367981 119368030 -30149007 + (TATG)n Simple_repeat Simple_repeat 1 50 0 6 1495 414 235 74 56 chr6 119368376 119368392 -30148645 - ID_B1 SINE B4 -9 215 202 6 1495 207 0 0 0 chr6 119368392 119368415 -30148622 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 1495 414 235 74 56 chr6 119368415 119368506 -30148531 - ID_B1 SINE B4 -23 201 106 6 1495 239 225 222 12 chr6 119368437 119368518 -30148519 - PB1D9 SINE Alu -22 98 1 6 1495 21 0 0 0 chr6 119368669 119368690 -30148347 + AT_rich Low_complexity Low_complexity 1 21 0 6 1495 233 338 44 44 chr6 119368964 119369100 -30147937 - Tigger16b DNA Tigger -11 326 191 6 1495 476 248 124 0 chr6 119369577 119369706 -30147331 + RSINE1 SINE B4 6 150 -15 6 1495 209 33 0 32 chr6 119369805 119369836 -30147201 + (TTA)n Simple_repeat Simple_repeat 2 31 0 6 1495 288 312 36 9 chr6 119369837 119369947 -30147090 - PB1D7 SINE Alu -7 113 1 6 1495 258 216 0 13 chr6 119369953 119370028 -30147009 + (TTA)n Simple_repeat Simple_repeat 1 74 0 6 1495 734 226 8 0 chr6 119370028 119370161 -30146876 - B1_Mur1 SINE Alu -12 137 4 6 1495 211 247 0 82 chr6 119370222 119370266 -30146771 + T-rich Low_complexity Low_complexity 52 89 0 6 1495 1062 96 0 40 chr6 119370266 119370418 -30146619 - B1_Mus2 SINE Alu -1 146 1 6 1495 1233 69 56 33 chr6 119370418 119370597 -30146440 - B2_Mm2 SINE B2 -10 185 2 6 1495 211 247 0 82 chr6 119370597 119370648 -30146389 + T-rich Low_complexity Low_complexity 2 51 0 6 1495 426 306 8 46 chr6 119370923 119371053 -30145984 + RSINE1 SINE B4 3 127 -38 6 1495 1077 237 78 70 chr6 119371242 119371627 -30145410 - RMER10B LTR ERVL -10 388 1 6 1495 384 159 40 92 chr6 119371627 119371703 -30145334 + URR1A DNA MER1_type 20 91 -135 6 1495 382 132 0 68 chr6 119371723 119371796 -30145241 - B1_Mur2 SINE Alu 0 149 82 6 1495 292 89 0 51 chr6 119371898 119371957 -30145080 + (AGGGGG)n Simple_repeat Simple_repeat 6 61 0 6 1495 508 196 21 0 chr6 119372011 119372108 -30144929 + B1_Mus1 SINE Alu 6 104 -44 6 1495 699 110 31 8 chr6 119373515 119373643 -30143394 + (TTCC)n Simple_repeat Simple_repeat 3 133 0 6 1495 23 0 0 0 chr6 119373749 119373772 -30143265 + AT_rich Low_complexity Low_complexity 1 23 0 6 1495 508 193 182 28 chr6 119374216 119374397 -30142640 - Lx9 LINE L1 -32 7612 7404 6 1495 992 249 118 20 chr6 119374398 119374644 -30142393 - RLTR33 LTR ERVK 0 678 409 6 1495 429 83 0 16 chr6 119374637 119374698 -30142339 - RLTR33 LTR ERVK -403 275 216 6 1495 250 360 117 24 chr6 119374687 119374892 -30142145 - RLTR19 LTR ERVK -266 233 10 6 1495 872 268 5 0 chr6 119374914 119375123 -30141914 - Lx9 LINE L1 -239 7405 7196 6 1495 228 86 0 0 chr6 119375126 119375161 -30141876 + (TTAA)n Simple_repeat Simple_repeat 1 35 0 6 1495 4122 212 75 55 chr6 119375622 119375802 -30141235 - Lx9 LINE L1 -435 7209 7051 6 1495 1255 48 0 0 chr6 119375802 119375949 -30141088 - B1_Mus2 SINE Alu 0 147 1 6 1495 4122 212 75 55 chr6 119375949 119376827 -30140210 - Lx9 LINE L1 -594 7050 6129 6 1495 1198 43 0 0 chr6 119376860 119377000 -30140037 + B1_Mus2 SINE Alu 1 140 -7 6 1495 416 281 0 0 chr6 119377003 119377099 -30139938 - B1F SINE Alu -52 97 2 6 1495 561 142 132 0 chr6 119377811 119377917 -30139120 + B1_Mur1 SINE Alu 21 140 -9 6 1495 331 261 52 0 chr6 119378326 119378407 -30138630 - ID4 SINE ID -64 88 6 6 1495 261 0 0 0 chr6 119378420 119378449 -30138588 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6 1495 289 258 83 0 chr6 119378452 119378539 -30138498 - B1_Mur4 SINE Alu -16 104 3 6 1495 324 0 0 0 chr6 119378542 119378578 -30138459 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 6 1495 868 56 0 0 chr6 119378582 119378690 -30138347 - B1_Mus1 SINE Alu -5 143 36 6 1495 24 0 0 0 chr6 119378691 119378715 -30138322 + AT_rich Low_complexity Low_complexity 1 24 0 6 1495 1052 179 76 10 chr6 119378715 119378912 -30138125 - B3 SINE B2 -3 213 4 6 1495 333 174 0 55 chr6 119379689 119379701 -30137336 + ID_B1 SINE B4 156 224 0 6 1495 347 148 33 0 chr6 119379701 119379762 -30137275 + B1_Mur1 SINE Alu 87 149 0 6 1495 729 227 0 32 chr6 119379829 119379984 -30137053 - B1_Mur4 SINE Alu 0 150 1 6 1495 351 0 0 0 chr6 119379996 119380035 -30137002 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1495 1121 22 0 7 chr6 119380035 119380166 -30136871 - B1_Mus1 SINE Alu -10 138 8 6 1495 736 320 119 44 chr6 119380196 119380676 -30136361 - Lx8 LINE L1 -60 7413 6898 6 1495 313 197 91 0 chr6 119381148 119381214 -30135823 + PB1D7 SINE Alu 46 117 -3 6 1495 676 266 111 78 chr6 119381370 119381676 -30135361 + ORR1E LTR MaLR 1 316 -43 6 1495 279 0 0 0 chr6 119382070 119382101 -30134936 + (CTTG)n Simple_repeat Simple_repeat 1 31 0 6 1495 293 305 0 74 chr6 119382119 119382282 -30134755 + GA-rich Low_complexity Low_complexity 1 151 0 6 1495 23 54 0 0 chr6 119383330 119383367 -30133670 + AT_rich Low_complexity Low_complexity 1 37 0 6 1495 447 279 29 0 chr6 119383927 119384031 -30133006 + RSINE1 SINE B4 2 108 -57 6 1495 1181 44 0 0 chr6 119384066 119384203 -30132834 + B1_Mm SINE Alu 1 137 -10 6 1495 317 22 0 43 chr6 119384203 119384250 -30132787 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 6 1495 774 133 156 0 chr6 119384267 119384395 -30132642 + B1_Mur3 SINE Alu 1 148 -1 6 1495 299 80 0 39 chr6 119384459 119384511 -30132526 + (CAGAGA)n Simple_repeat Simple_repeat 2 51 0 6 1495 474 244 56 29 chr6 119384588 119384736 -30132301 - RSINE1 SINE B4 -142 150 3 6 1495 351 333 34 62 chr6 119384764 119384943 -30132094 - B4A SINE B4 -118 174 1 6 1495 811 275 19 0 chr6 119384973 119385180 -30131857 - ID_B1 SINE B4 -12 212 2 6 1495 255 303 45 0 chr6 119385186 119385252 -30131785 - PB1 SINE Alu -7 120 52 6 1495 390 320 88 0 chr6 119386519 119386644 -30130393 + ID_B1 SINE B4 3 138 -86 6 1495 233 304 69 162 chr6 119386911 119387021 -30130016 + ID_B1 SINE B4 1 180 -39 6 1495 424 239 0 11 chr6 119387021 119387110 -30129927 + PB1D7 SINE Alu 17 104 -16 6 1495 675 99 0 10 chr6 119387119 119387221 -30129816 - B1_Mm SINE Alu -1 146 46 6 1495 353 288 0 60 chr6 119387221 119387252 -30129785 - ID_B1 SINE B4 0 224 100 6 1495 279 0 0 0 chr6 119387258 119387289 -30129748 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1495 1039 72 0 35 chr6 119387289 119387433 -30129604 - B1_Mus1 SINE Alu -8 140 2 6 1495 1651 26 0 10 chr6 119387446 119387640 -30129397 - B2_Mm1t SINE B2 -1 192 1 6 1495 405 0 0 0 chr6 119387665 119387710 -30129327 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1495 649 217 14 7 chr6 119387713 119387852 -30129185 + B1F SINE Alu 1 140 -9 6 1495 341 194 90 70 chr6 119388838 119388938 -30128099 - PB1D7 SINE Alu 0 120 19 6 1495 726 212 13 46 chr6 119389574 119389689 -30127348 + B1_Mur1 SINE Alu 1 117 -32 6 1495 3333 48 8 12 chr6 119389689 119390091 -30126946 + MTB LTR MaLR 1 400 0 6 1495 726 212 13 46 chr6 119390091 119390128 -30126909 + B1_Mur1 SINE Alu 118 148 -1 6 1495 998 264 181 16 chr6 119391285 119391432 -30125605 + L1MB7 LINE L1 5583 5737 -447 6 1495 204 97 0 0 chr6 119391432 119391463 -30125574 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 7 1495 998 264 181 16 chr6 119391463 119391823 -30125214 + L1MB7 LINE L1 5738 6173 -11 6 1495 587 292 0 27 chr6 119392034 119392182 -30124855 + B3A SINE B2 1 144 -54 7 1495 240 122 0 0 chr6 119392183 119392224 -30124813 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1495 1226 20 0 45 chr6 119392471 119392625 -30124412 + B1_Mm SINE Alu 1 147 0 7 1495 198 0 0 0 chr6 119392699 119392721 -30124316 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 7 1495 1282 27 0 0 chr6 119392725 119392872 -30124165 - B1_Mm SINE Alu 0 147 1 7 1495 734 228 6 39 chr6 119392883 119393061 -30123976 - B3A SINE B2 0 198 27 7 1495 213 39 0 0 chr6 119393084 119393110 -30123927 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1495 1323 94 17 0 chr6 119393144 119393324 -30123713 - B2_Mm2 SINE B2 -11 184 2 7 1495 469 16 0 0 chr6 119393385 119393447 -30123590 - L1Md_T LINE L1 0 6582 6521 7 1495 376 290 111 82 chr6 119393595 119393839 -30123198 - L3 LINE CR1 -149 4340 4090 7 1495 258 32 0 0 chr6 119394158 119394189 -30122848 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1495 820 203 7 0 chr6 119394476 119394619 -30122418 + B1_Mur3 SINE Alu 5 148 -1 7 1495 673 232 172 17 chr6 119394932 119395112 -30121925 - B4A SINE B4 -48 244 37 7 1495 365 225 12 12 chr6 119395103 119395184 -30121853 - B4 SINE B4 -209 83 3 7 1495 862 146 73 0 chr6 119396746 119396883 -30120154 + B1_Mur2 SINE Alu 1 147 -2 7 1495 432 0 0 0 chr6 119397556 119397604 -30119433 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1495 522 0 0 0 chr6 119399138 119399196 -30117841 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1495 239 318 0 53 chr6 119400806 119400919 -30116118 + L1MB8 LINE L1 6065 6171 -7 7 1495 24 0 0 0 chr6 119401914 119401938 -30115099 + AT_rich Low_complexity Low_complexity 1 24 0 7 1495 397 278 93 0 chr6 119403124 119403232 -30113805 + RSINE1 SINE B4 3 120 -45 7 1495 1234 61 0 0 chr6 119403232 119403379 -30113658 + B1_Mus1 SINE Alu 2 148 0 7 1495 189 217 17 35 chr6 119403645 119403817 -30113220 + (TG)n Simple_repeat Simple_repeat 1 169 0 7 1495 271 235 0 22 chr6 119403855 119404038 -30112999 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1495 437 232 82 12 chr6 119404047 119404218 -30112819 - B3A SINE B2 -11 205 20 7 1495 26 0 0 0 chr6 119404218 119404244 -30112793 + AT_rich Low_complexity Low_complexity 1 26 0 7 1495 1247 48 0 0 chr6 119404245 119404390 -30112647 - B1_Mus2 SINE Alu -1 146 2 7 1495 289 302 13 0 chr6 119404892 119404981 -30112056 + ID4 SINE ID 8 97 -55 7 1495 468 0 0 0 chr6 119405022 119405074 -30111963 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1495 505 203 64 116 chr6 119405128 119405301 -30111736 + RSINE1 SINE B4 2 165 0 7 1495 318 50 0 0 chr6 119405757 119405797 -30111240 + (TAA)n Simple_repeat Simple_repeat 3 42 0 7 186 1217 61 0 7 chr6 119406582 119406730 -30110307 - B1_Mus2 SINE Alu 0 147 1 7 1496 240 233 49 84 chr6 119406842 119406953 -30110084 - ID4_ SINE ID -28 124 18 7 1496 214 288 38 88 chr6 119406886 119406966 -30110071 - ID SINE ID -140 84 9 7 1496 308 318 13 48 chr6 119406951 119407088 -30109949 - PB1D10 SINE Alu -14 135 1 7 1496 919 249 85 28 chr6 119407110 119407428 -30109609 + L1_Rod LINE L1 5486 5821 -26 7 1496 773 152 60 8 chr6 119407450 119407583 -30109454 - B1_Mur1 SINE Alu -2 147 8 7 1496 449 242 48 90 chr6 119407453 119407598 -30109439 - B4 SINE B4 -71 221 83 7 1496 232 230 10 103 chr6 119407773 119407870 -30109167 + RLTR1D LTR ERV1 237 324 -281 7 1496 390 141 16 0 chr6 119407928 119407992 -30109045 + B1_Mus2 SINE Alu 83 147 0 7 1496 306 295 8 125 chr6 119408044 119408172 -30108865 - RSINE1 SINE B4 0 165 53 7 1496 228 268 0 0 chr6 119408340 119408396 -30108641 + ID2 SINE ID 3 58 -25 7 1496 233 213 82 0 chr6 119408616 119408677 -30108360 - L1P5 LINE L1 -724 5432 5367 7 1496 201 74 0 0 chr6 119409112 119409139 -30107898 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1496 712 271 20 0 chr6 119409444 119409595 -30107442 + RSINE1 SINE B4 12 165 0 7 1496 323 267 53 92 chr6 119409938 119410144 -30106893 - B3A SINE B2 0 198 1 7 1496 629 250 23 0 chr6 119410730 119410858 -30106179 - RSINE1 SINE B4 -33 132 2 7 1496 384 243 69 43 chr6 119410881 119410997 -30106040 - PB1 SINE Alu -1 119 1 7 1496 1211 29 7 0 chr6 119411306 119411444 -30105593 + B1_Mus1 SINE Alu 1 139 -9 7 1496 212 0 0 35 chr6 119411444 119411473 -30105564 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1496 2304 286 102 59 chr6 119412376 119412830 -30104207 - L1MB4 LINE L1 -217 5963 5456 7 1496 948 140 14 0 chr6 119412830 119412973 -30104064 - B1_Mur4 SINE Alu -1 149 5 7 1496 2304 284 112 60 chr6 119412973 119413572 -30103465 - L1MB4 LINE L1 -425 5455 4763 7 1496 383 0 0 21 chr6 119413572 119413620 -30103417 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1496 2304 284 112 60 chr6 119413620 119414265 -30102772 - L1MB4 LINE L1 -1118 4762 4148 7 1496 237 242 0 57 chr6 119414451 119414521 -30102516 + tRNA-Ala-GCA tRNA tRNA 2 67 -8 7 1496 491 242 45 45 chr6 119414796 119414952 -30102085 - ID_B1 SINE B4 0 224 69 7 1496 242 121 0 0 chr6 119415336 119415369 -30101668 - ID_B1 SINE B4 -33 191 159 7 1496 775 199 182 57 chr6 119415949 119416099 -30100938 - B3 SINE B2 0 216 41 7 1496 1503 53 26 5 chr6 119416099 119416290 -30100747 - B2_Mm2 SINE B2 0 195 1 7 1496 775 199 182 57 chr6 119416290 119416331 -30100706 - B3 SINE B2 -176 40 1 7 1496 187 310 17 0 chr6 119416498 119416556 -30100481 + MIR SINE MIR 112 170 -92 7 1496 238 264 84 109 chr6 119416886 119417005 -30100032 + PB1D10 SINE Alu 2 117 0 7 1496 498 96 0 0 chr6 119418010 119418083 -30098954 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1496 278 238 63 0 chr6 119418234 119418297 -30098740 + PB1D7 SINE Alu 27 93 -27 7 1496 707 287 51 0 chr6 119418805 119419000 -30098037 - B3 SINE B2 -11 205 1 7 1496 876 152 0 0 chr6 119419364 119419515 -30097522 + CT-rich Low_complexity Low_complexity 2 152 0 7 1496 1036 112 0 0 chr6 119419518 119419661 -30097376 - B1_Mm SINE Alu 0 147 5 7 1496 741 219 40 0 chr6 119419850 119420001 -30097036 + B3A SINE B2 1 157 -41 7 1496 351 0 0 0 chr6 119420013 119420052 -30096985 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1496 369 0 0 0 chr6 119420052 119420092 -30096945 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1496 393 179 0 15 chr6 119420093 119420161 -30096876 - B1_Mur1 SINE Alu -41 108 42 7 1496 531 154 115 0 chr6 119420161 119420357 -30096680 + (CCTG)n Simple_repeat Simple_repeat 1 218 0 7 1496 873 150 0 62 chr6 119420248 119420440 -30096597 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 7 1496 292 224 0 33 chr6 119420442 119420502 -30096535 - B1_Mus2 SINE Alu -88 59 2 7 1496 286 298 0 116 chr6 119420502 119420541 -30096496 - B4A SINE B4 -206 86 59 7 1496 701 322 47 62 chr6 119420556 119420590 -30096447 + MTE2a LTR MaLR 9 40 -379 7 1496 1112 133 133 0 chr6 119420590 119420786 -30096251 - URR1A DNA MER1_type 0 226 5 7 1496 1053 278 26 63 chr6 119420786 119421155 -30095882 + MTE2a LTR MaLR 41 405 -14 7 1496 1075 221 167 12 chr6 119421159 119421488 -30095549 + MTE2a-int LTR MaLR 8 387 -1193 7 1496 477 292 134 42 chr6 119421583 119421822 -30095215 + MTE2a-int LTR MaLR 544 804 -776 7 1496 3653 241 50 34 chr6 119421834 119422885 -30094152 + ERVL-int LTR ERVL 4242 5309 -448 7 1496 1146 227 121 19 chr6 119422885 119423208 -30093829 - MTD LTR MaLR -54 365 10 7 1496 915 274 43 12 chr6 119423222 119423551 -30093486 + ERVL-int LTR ERVL 5374 5712 -2 7 1496 885 273 240 5 chr6 119423560 119423976 -30093061 + MT2A LTR ERVL 13 526 -7 7 1496 455 240 123 69 chr6 119423981 119424111 -30092926 + B1F2 SINE Alu 4 140 -9 7 1496 356 346 48 26 chr6 119424221 119424494 -30092543 - L1M1 LINE L1 -723 5580 5302 7 1496 436 309 8 21 chr6 119425086 119425208 -30091829 - PB1 SINE Alu 0 120 10 7 1496 1048 191 18 67 chr6 119425293 119425518 -30091519 + B3 SINE B2 3 216 0 7 1496 27 0 0 0 chr6 119425518 119425545 -30091492 + AT_rich Low_complexity Low_complexity 1 27 0 7 1496 671 242 149 0 chr6 119425550 119425744 -30091293 + ID_B1 SINE B4 2 224 0 7 1496 292 308 51 8 chr6 119425771 119425889 -30091148 + RSINE1 SINE B4 5 127 -38 7 1496 286 303 10 48 chr6 119425894 119425998 -30091039 - PB1D10 SINE Alu -17 100 1 7 1496 1266 41 0 0 chr6 119426327 119426474 -30090563 - B1_Mus2 SINE Alu 0 147 1 7 1496 537 292 0 9 chr6 119426712 119426826 -30090211 + B1F1 SINE Alu 2 114 -35 7 1496 243 304 16 94 chr6 119426714 119426841 -30090196 - YREP_Mm Unknown Unknown -1500 312 196 7 1496 533 240 154 49 chr6 119426912 119427074 -30089963 + B3A SINE B2 3 181 -17 7 1496 285 140 0 0 chr6 119427089 119427105 -30089932 + (GAAA)n Simple_repeat Simple_repeat 2 17 0 7 1496 736 182 83 0 chr6 119427105 119427237 -30089800 + B1_Mur2 SINE Alu 1 143 -6 7 1496 285 140 0 0 chr6 119427237 119427270 -30089767 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 7 1496 513 293 8 16 chr6 119427552 119427677 -30089360 + RSINE1 SINE B4 21 144 -21 7 1496 293 288 0 0 chr6 119427766 119427839 -30089198 + RSINE1 SINE B4 28 100 -65 7 1496 505 286 53 0 chr6 119428209 119428342 -30088695 + RSINE1 SINE B4 9 148 -17 7 1496 256 123 39 52 chr6 119429581 119429658 -30087379 + (CGCGG)n Simple_repeat Simple_repeat 3 78 0 7 1496 36 87 0 0 chr6 119429750 119429842 -30087195 + GC_rich Low_complexity Low_complexity 1 92 0 7 1496 181 30 59 29 chr6 119431599 119431633 -30085404 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1496 294 179 0 0 chr6 119431707 119431763 -30085274 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1496 400 227 209 55 chr6 119433964 119434127 -30082910 + B3A SINE B2 1 188 -10 7 1496 332 260 103 10 chr6 119434603 119434700 -30082337 + PB1D10 SINE Alu 1 106 -11 7 1496 28 71 0 0 chr6 119435079 119435135 -30081902 + AT_rich Low_complexity Low_complexity 1 56 0 8 1496 325 268 204 28 chr6 119435189 119435331 -30081706 + ID_B1 SINE B4 47 213 -11 8 1496 206 81 27 0 chr6 119435428 119435465 -30081572 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 8 1496 611 173 105 0 chr6 119435471 119435604 -30081433 - B1F1 SINE Alu -2 147 1 8 1496 203 278 82 14 chr6 119435803 119435876 -30081161 + L2 LINE L2 2225 2302 -1117 8 1496 421 173 295 18 chr6 119436453 119436565 -30080472 - B1F SINE Alu -2 147 5 8 1496 283 243 13 63 chr6 119436649 119436728 -30080309 + ID4 SINE ID 1 75 -8 8 1496 395 240 0 0 chr6 119437554 119437629 -30079408 - ID_B1 SINE B4 -6 218 144 8 1496 273 226 71 61 chr6 119437629 119437653 -30079384 - PB1D7 SINE Alu -6 114 15 8 1496 555 208 50 8 chr6 119438110 119438231 -30078806 + B1_Mur1 SINE Alu 2 127 -22 8 1496 21 0 0 0 chr6 119438236 119438257 -30078780 + AT_rich Low_complexity Low_complexity 1 21 0 8 1496 747 214 134 6 chr6 119438271 119438308 -30078729 - RLTR20B3 LTR ERVK -56 521 481 8 1496 180 0 0 0 chr6 119438308 119438328 -30078709 + (CA)n Simple_repeat Simple_repeat 2 21 0 8 1496 747 214 134 6 chr6 119438328 119438469 -30078568 - RLTR20B3 LTR ERVK -97 480 321 8 1496 227 244 0 0 chr6 119438471 119438516 -30078521 + RLTR20B3 LTR ERVK 471 515 -62 8 1496 883 148 0 27 chr6 119438790 119438936 -30078101 + B1_Mus1 SINE Alu 5 146 -2 8 1496 2268 128 12 0 chr6 119439251 119439596 -30077441 - MTC LTR MaLR 0 421 73 8 1496 268 178 0 0 chr6 119439593 119439638 -30077399 + ID_B1 SINE B4 168 212 -12 8 1496 253 163 61 0 chr6 119439597 119439646 -30077391 + PB1 SINE Alu 73 124 -3 8 1496 287 200 0 0 chr6 119440163 119440213 -30076824 - RSINE1 SINE B4 -113 52 3 8 1496 360 0 0 0 chr6 119440903 119440943 -30076094 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 8 1496 195 42 0 0 chr6 119441238 119441262 -30075775 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 8 1496 842 150 0 0 chr6 119441883 119442010 -30075027 - B1_Mus1 SINE Alu -21 127 1 8 1496 472 161 16 132 chr6 119441897 119442026 -30075011 - MT2B LTR ERVL -337 264 151 8 1496 474 252 73 15 chr6 119443395 119443532 -30073505 + B1_Mm SINE Alu 1 145 -2 8 1496 2577 156 10 0 chr6 119443623 119444039 -30072998 + MTC LTR MaLR 2 421 0 8 1496 1021 240 97 102 chr6 119444183 119444564 -30072473 + MTE2a LTR MaLR 1 379 0 8 1496 1479 60 16 0 chr6 119444661 119444845 -30072192 - B2_Mm2 SINE B2 -8 187 1 8 1496 645 274 38 87 chr6 119444934 119445118 -30071919 - B3A SINE B2 -2 214 40 8 1496 760 239 119 0 chr6 119445122 119445298 -30071739 + B3 SINE B2 1 197 -19 8 1496 669 211 51 32 chr6 119445326 119445483 -30071554 + RSINE1 SINE B4 5 164 -1 8 1496 264 241 25 12 chr6 119445601 119445681 -30071356 - ID4 SINE ID 0 83 3 8 1496 286 176 39 0 chr6 119445911 119446013 -30071024 + (CAAAC)n Simple_repeat Simple_repeat 1 106 0 8 1496 746 211 18 12 chr6 119446198 119446366 -30070671 + RMER17B LTR ERVK 790 958 0 8 1496 970 185 50 30 chr6 119446400 119446601 -30070436 - B3 SINE B2 -10 206 2 8 1496 666 97 205 26 chr6 119446813 119446930 -30070107 - B1_Mus2 SINE Alu 0 147 10 8 1496 482 0 17 0 chr6 119447534 119447592 -30069445 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 1496 1373 53 0 6 chr6 119447680 119447852 -30069185 + B2_Mm2 SINE B2 1 171 -24 8 1496 543 181 9 45 chr6 119448384 119448494 -30068543 + B1F2 SINE Alu 44 149 0 8 1496 1079 91 23 0 chr6 119449127 119449302 -30067735 + (GAA)n Simple_repeat Simple_repeat 1 179 0 8 1496 342 0 0 0 chr6 119449302 119449340 -30067697 + (GGA)n Simple_repeat Simple_repeat 1 38 0 8 1496 351 0 0 0 chr6 119450339 119450378 -30066659 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1496 394 153 0 89 chr6 119450381 119450460 -30066577 - B4A SINE B4 -13 279 208 8 1496 424 217 12 12 chr6 119450456 119450540 -30066497 - B1_Mur3 SINE Alu -65 84 1 8 1496 451 276 41 117 chr6 119450559 119450706 -30066331 - B4A SINE B4 -63 229 85 8 1496 4082 66 84 7 chr6 119450706 119451253 -30065784 - L1_Mus3 LINE L1 0 6638 6050 8 1496 451 276 41 117 chr6 119451253 119451302 -30065735 - B4A SINE B4 -208 84 48 8 1496 845 149 0 6 chr6 119451404 119451461 -30065576 + polypyrimidine Low_complexity Low_complexity 108 164 0 8 1496 1140 96 0 0 chr6 119451461 119451638 -30065399 + (TCCC)n Simple_repeat Simple_repeat 4 180 0 8 1496 845 149 0 6 chr6 119451638 119451742 -30065295 + polypyrimidine Low_complexity Low_complexity 4 107 0 8 1496 914 99 92 0 chr6 119451752 119451883 -30065154 - B1_Mur4 SINE Alu -6 144 2 8 1496 639 244 24 42 chr6 119451915 119452082 -30064955 - RSINE1 SINE B4 0 165 2 8 1496 228 67 0 0 chr6 119452738 119452768 -30064269 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1496 571 307 76 23 chr6 119453473 119453736 -30063301 - B4A SINE B4 -14 278 2 8 1496 569 282 14 7 chr6 119453750 119453893 -30063144 - B1F2 SINE Alu -5 144 1 8 1496 1305 38 0 6 chr6 119454189 119454348 -30062689 - B2_Mm2 SINE B2 -37 158 1 8 1496 336 200 0 0 chr6 119454412 119454487 -30062550 + GA-rich Low_complexity Low_complexity 2 76 0 8 1496 639 256 58 0 chr6 119454512 119454668 -30062369 - B3A SINE B2 -18 180 16 8 1496 285 250 224 87 chr6 119455880 119456121 -30060916 + LTR16C LTR ERVL 132 405 -84 8 1496 1465 221 60 6 chr6 119456168 119456519 -30060518 - ORR1D2 LTR MaLR 0 370 1 8 1496 1471 162 87 157 chr6 119456565 119456967 -30060070 + ORR1D1 LTR MaLR 1 374 0 8 1496 337 141 28 0 chr6 119457155 119457226 -30059811 + CT-rich Low_complexity Low_complexity 2 74 0 8 1496 203 88 29 0 chr6 119457271 119457305 -30059732 + (TTC)n Simple_repeat Simple_repeat 2 36 0 8 1496 1087 95 0 26 chr6 119457306 119457457 -30059580 - B1_Mus2 SINE Alu 0 147 1 8 1496 726 156 16 0 chr6 119457473 119457595 -30059442 - B1_Mur1 SINE Alu -5 144 21 8 1496 335 235 27 89 chr6 119457495 119457607 -30059430 - MT2B LTR ERVL -323 278 174 8 1496 1807 154 17 127 chr6 119457864 119457922 -30059115 - ORR1B1 LTR MaLR 0 394 348 8 1496 830 112 31 168 chr6 119457922 119458148 -30058889 - B2_Mm2 SINE B2 0 195 1 8 1496 1807 154 17 127 chr6 119458148 119458499 -30058538 - ORR1B1 LTR MaLR -47 347 30 8 1496 238 133 178 0 chr6 119458597 119458642 -30058395 - ID_B1 SINE B4 0 224 172 8 1496 511 156 167 0 chr6 119458605 119458695 -30058342 - B1_Mur2 SINE Alu -43 106 2 8 1496 329 242 28 83 chr6 119458695 119458729 -30058308 - MT2B LTR ERVL -435 166 139 8 1496 881 262 121 49 chr6 119458764 119459230 -30057807 - L1MCa LINE L1 -4796 1712 1185 8 1496 836 145 38 0 chr6 119459230 119459361 -30057676 - B1_Mur1 SINE Alu -13 136 1 8 1496 881 245 178 63 chr6 119459361 119459718 -30057319 - L1MCa LINE L1 -5324 1184 776 8 1496 332 241 133 33 chr6 119459736 119459856 -30057181 - MLT1A1 LTR MaLR -21 387 256 8 1496 690 241 193 100 chr6 119460456 119460756 -30056281 + ORR1E LTR MaLR 32 359 0 8 1496 494 236 6 118 chr6 119460780 119460958 -30056079 - L1MCa LINE L1 -5736 772 615 8 1496 311 280 0 0 chr6 119462593 119462668 -30054369 + PB1D10 SINE Alu 38 112 -5 8 1496 1746 171 118 27 chr6 119463507 119463879 -30053158 + MTD LTR MaLR 3 408 -11 8 1496 233 29 29 0 chr6 119464505 119464539 -30052498 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1496 486 246 0 66 chr6 119465417 119465539 -30051498 - PB1D9 SINE Alu -6 114 1 8 1496 276 326 110 34 chr6 119465539 119465563 -30051474 - B4A SINE B4 -71 221 65 8 1496 798 253 0 0 chr6 119465589 119465763 -30051274 - Lx5 LINE L1 -713 6337 6164 8 1496 435 19 0 0 chr6 119465962 119466014 -30051023 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 8 1496 1204 44 0 0 chr6 119466140 119466277 -30050760 + B1_Mus2 SINE Alu 1 137 -10 8 1496 264 59 0 0 chr6 119466277 119466311 -30050726 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1496 387 331 68 18 chr6 119466376 119466539 -30050498 + MLT1C LTR MaLR 3 173 -294 8 1496 777 254 27 38 chr6 119466557 119466741 -30050296 + B3 SINE B2 3 184 -32 8 1496 407 268 235 30 chr6 119466756 119466956 -30050081 + MLT1C LTR MaLR 200 440 -27 8 1496 849 247 20 49 chr6 119467138 119467342 -30049695 - B3A SINE B2 0 198 1 8 1496 1452 232 154 10 chr6 119467372 119467768 -30049269 - MTE2b-int LTR MaLR -1127 453 1 8 1496 697 277 27 16 chr6 119467772 119467959 -30049078 - MTE2b LTR MaLR -4 375 187 8 1496 297 0 0 0 chr6 119467976 119468009 -30049028 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1496 289 222 0 82 chr6 119468100 119468198 -30048839 + RMER3D-int LTR ERVK 1022 1111 -1731 8 1496 1405 191 42 37 chr6 119468236 119468601 -30048436 + RMER3D-int LTR ERVK 1022 1378 -1464 8 1496 897 209 41 29 chr6 119468610 119468900 -30048137 + MYSERV16_I-int LTR ERVK 277 544 -1782 8 1496 4328 196 85 21 chr6 119468909 119470328 -30046709 + MYSERV16_I-int LTR ERVK 639 2821 -21 8 1496 595 276 73 83 chr6 119470367 119470740 -30046297 + RLTR16 LTR ERVK 1 424 -268 8 1496 934 209 51 25 chr6 119471108 119471344 -30045693 - L1_Rod LINE L1 -1573 4274 4033 8 1496 373 225 157 8 chr6 119471344 119471444 -30045593 - PB1D10 SINE Alu -38 111 1 8 1496 300 53 0 0 chr6 119471648 119471686 -30045351 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 1496 233 255 111 10 chr6 119471783 119471882 -30045155 - MIRb SINE MIR -125 143 35 8 1496 283 266 67 45 chr6 119473785 119473919 -30043118 + L1MA5 LINE L1 5803 5939 -361 8 1496 243 0 0 0 chr6 119474349 119474376 -30042661 + (CAGA)n Simple_repeat Simple_repeat 3 29 0 8 1496 680 304 138 3 chr6 119474816 119475113 -30041924 + Kanga1c DNA Tc2 128 464 -265 8 1496 612 140 0 45 chr6 119475209 119475321 -30041716 - B1_Mur4 SINE Alu -7 143 37 8 1496 585 189 130 56 chr6 119475303 119475465 -30041572 - B3 SINE B2 -42 174 1 8 1496 302 252 115 10 chr6 119475534 119475638 -30041399 + PB1 SINE Alu 13 127 0 9 1496 378 202 10 101 chr6 119475690 119475789 -30041248 - MER119 DNA MER1_type -31 552 463 9 1496 266 289 108 0 chr6 119475882 119475965 -30041072 - MER119 DNA MER1_type -131 452 361 9 1496 196 231 92 0 chr6 119476000 119476065 -30040972 - MIRc SINE MIR -125 143 73 9 1496 206 250 177 9 chr6 119477397 119477510 -30039527 - MIRc SINE MIR -57 211 80 9 1496 342 216 53 26 chr6 119478525 119478639 -30038398 + L1M4 LINE L1 5299 5415 -769 9 1496 338 0 24 0 chr6 119478640 119478682 -30038355 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1496 314 221 29 14 chr6 119478682 119478751 -30038286 - ID SINE ID -153 71 2 9 1496 428 298 0 9 chr6 119478806 119478921 -30038116 - MLT1B LTR MaLR -47 343 230 9 1496 556 198 66 8 chr6 119478928 119479050 -30037987 + B3A SINE B2 12 140 -58 9 1496 488 212 114 10 chr6 119479516 119479664 -30037373 - RMER20A LTR ERVK -247 380 224 9 1496 779 192 13 64 chr6 119480013 119480169 -30036868 + B1_Mur1 SINE Alu 2 149 0 9 1496 671 279 113 23 chr6 119480626 119480927 -30036110 + L1M4 LINE L1 5492 5819 -365 9 1496 348 276 0 0 chr6 119481253 119481329 -30035708 - PB1D10 SINE Alu -5 112 37 9 1496 765 246 118 38 chr6 119481411 119481673 -30035364 + B4A SINE B4 2 284 -8 9 1496 412 315 118 63 chr6 119481715 119481969 -30035068 + L1MEf LINE L1 1929 2196 -4906 9 1496 946 178 14 1 chr6 119481973 119482157 -30034880 + B3 SINE B2 1 194 -4 9 1496 270 0 0 0 chr6 119482233 119482263 -30034774 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 9 1496 278 194 78 97 chr6 119482263 119482288 -30034749 - PB1D10 SINE Alu 0 117 91 9 1496 1090 78 28 0 chr6 119482288 119482430 -30034607 - B1_Mm SINE Alu 0 147 2 9 1496 453 68 0 0 chr6 119482430 119482489 -30034548 - 4.5SRNA scRNA scRNA -2 92 34 9 1496 651 284 115 5 chr6 119482489 119482698 -30034339 + B4A SINE B4 20 251 -41 9 1496 278 194 78 97 chr6 119482489 119482507 -30034530 - PB1D10 SINE Alu -27 90 17 9 1496 1126 44 7 0 chr6 119482701 119482837 -30034200 + B1_Mm SINE Alu 2 138 -9 9 1496 505 156 30 0 chr6 119482851 119483018 -30034019 + (TA)n Simple_repeat Simple_repeat 1 172 0 9 1496 252 149 0 0 chr6 119483053 119483100 -30033937 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1496 297 258 116 30 chr6 119483201 119483354 -30033683 + L1MEf LINE L1 2290 2484 -4618 9 1496 360 229 0 28 chr6 119483852 119483924 -30033113 + ID4_ SINE ID 2 71 -12 9 1496 441 0 0 0 chr6 119483934 119483983 -30033054 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1496 706 250 7 7 chr6 119484070 119484215 -30032822 + RSINE1 SINE B4 2 146 -19 9 1496 459 0 0 0 chr6 119484228 119484279 -30032758 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 9 1496 462 290 122 28 chr6 119484390 119484645 -30032392 + L1MC4a LINE L1 7595 7873 -9 9 1496 1241 257 3 40 chr6 119484711 119485007 -30032030 + B4A SINE B4 8 292 0 9 1496 242 324 31 75 chr6 119485045 119485205 -30031832 + L1ME2 LINE L1 5806 5958 -206 9 1496 183 225 20 128 chr6 119486002 119486104 -30030933 - MIR SINE MIR -10 252 162 9 1496 617 229 0 0 chr6 119487115 119487233 -30029804 + B1F2 SINE Alu 31 148 -1 9 1496 237 301 31 41 chr6 119487988 119488085 -30028952 - RSINE1 SINE B4 -58 107 12 9 1496 845 213 90 15 chr6 119488605 119488805 -30028232 - B3 SINE B2 0 216 2 9 1496 354 107 0 0 chr6 119489591 119489647 -30027390 + (CAA)n Simple_repeat Simple_repeat 1 56 0 9 1496 3551 42 5 2 chr6 119489817 119490360 -30026677 + L1_Mus3 LINE L1 6195 6638 0 9 1496 253 288 25 0 chr6 119491797 119491877 -30025160 + ID2 SINE ID 2 83 0 9 1496 226 234 15 45 chr6 119492036 119492103 -30024934 - ID4_ SINE ID -16 67 3 9 1496 270 252 99 106 chr6 119492374 119492525 -30024512 + MT2B LTR ERVL 101 250 -351 9 1496 636 99 33 0 chr6 119492434 119492525 -30024512 + B1_Mus2 SINE Alu 2 95 -52 9 1496 402 242 132 8 chr6 119492525 119492554 -30024483 + B4 SINE B4 109 223 -69 9 1496 197 59 59 0 chr6 119494354 119494388 -30022649 + (CCCCG)n Simple_repeat Simple_repeat 4 39 0 9 1496 429 293 17 0 chr6 119495965 119496081 -30020956 + MTE2b LTR MaLR 9 126 -253 9 1496 226 184 0 58 chr6 119496176 119496228 -30020809 + B1_Mur2 SINE Alu 101 149 0 9 1496 585 160 0 0 chr6 119496313 119496419 -30020618 + GA-rich Low_complexity Low_complexity 3 108 0 9 1496 941 162 14 0 chr6 119496431 119496579 -30020458 + B1_Mur4 SINE Alu 1 150 0 9 1496 195 139 0 0 chr6 119496579 119496615 -30020422 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 9 1496 469 218 61 35 chr6 119497332 119497446 -30019591 - ORR1E LTR MaLR 0 379 263 9 1496 958 210 86 10 chr6 119497522 119497719 -30019318 + B3 SINE B2 1 212 -4 9 1496 1253 107 11 5 chr6 119497766 119497954 -30019083 + B2_Mm1t SINE B2 1 189 -4 9 1496 596 250 0 29 chr6 119497949 119498085 -30018952 - ORR1E LTR MaLR -206 153 22 9 1496 1087 228 85 91 chr6 119498061 119498380 -30018657 - ORR1E-int LTR MaLR -27 1553 1237 9 1496 1745 160 19 44 chr6 119498376 119498525 -30018512 - ORR1D1 LTR MaLR -62 312 167 9 1496 429 0 49 0 chr6 119498525 119498586 -30018451 + (GA)n Simple_repeat Simple_repeat 1 64 0 9 1496 1745 160 19 44 chr6 119498586 119498756 -30018281 - ORR1D1 LTR MaLR -208 166 1 9 1496 333 257 57 0 chr6 119498875 119498945 -30018092 - RSINE1 SINE B4 -89 76 3 9 1496 241 163 0 23 chr6 119499304 119499348 -30017689 - ID_B1 SINE B4 -71 153 111 9 1496 338 208 83 0 chr6 119499349 119499421 -30017616 + MT2A LTR ERVL 2 79 -454 9 1496 2022 258 14 15 chr6 119499434 119499946 -30017091 - Lx5 LINE L1 -100 6950 6464 9 1496 752 233 129 5 chr6 119500000 119500194 -30016843 - Lx5 LINE L1 -602 6448 6231 1 1496 304 280 75 11 chr6 119500194 119500288 -30016749 + MTEa LTR MaLR 47 146 -233 2 1496 1395 249 95 72 chr6 119500216 119500658 -30016379 + MT2A LTR ERVL 73 524 -9 3 1496 180 0 0 0 chr6 119501869 119501889 -30015148 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1496 229 104 26 0 chr6 119502082 119502126 -30014911 - B1_Mur4 SINE Alu -9 141 63 5 1496 2332 141 64 53 chr6 119502126 119502373 -30014664 + Lx4B LINE L1 6578 6834 -224 6 1496 450 0 0 0 chr6 119502373 119502423 -30014614 + (CCTG)n Simple_repeat Simple_repeat 1 50 0 7 1496 2332 141 64 53 chr6 119502423 119502647 -30014390 + Lx4B LINE L1 6835 7054 -4 6 1496 429 217 127 33 chr6 119502738 119502813 -30014224 - Lx9 LINE L1 0 7644 7570 8 1496 324 0 0 0 chr6 119502813 119502849 -30014188 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1496 429 217 127 33 chr6 119502849 119502954 -30014083 - Lx9 LINE L1 -75 7569 7449 8 1496 416 129 86 0 chr6 119502983 119503076 -30013961 - Lx9 LINE L1 -1 7643 7543 1 1496 387 73 0 0 chr6 119503085 119503140 -30013897 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1 1496 347 171 29 0 chr6 119503142 119503212 -30013825 - Lx9 LINE L1 -179 7465 7394 1 1496 379 233 0 0 chr6 119503210 119503283 -30013754 + Lx9 LINE L1 7270 7342 -302 1 1496 535 246 9 0 chr6 119503493 119503603 -30013434 + PB1 SINE Alu 1 111 -16 1 1496 363 224 100 39 chr6 119504101 119504231 -30012806 + Lx5 LINE L1 6906 7043 -7 1 1496 207 0 0 0 chr6 119504231 119504254 -30012783 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1496 1457 153 104 112 chr6 119504817 119505192 -30011845 + ORR1D1 LTR MaLR 1 372 -2 1 1496 265 306 51 1 chr6 119505193 119505333 -30011704 + L1MB2 LINE L1 5678 5824 -347 1 1496 254 287 80 18 chr6 119505400 119505571 -30011466 + L1MB2 LINE L1 5934 6146 -37 1 1496 836 298 22 22 chr6 119505634 119505864 -30011173 + B4A SINE B4 1 230 -62 1 1496 707 221 15 0 chr6 119505864 119506000 -30011037 + B3 SINE B2 79 216 0 1 1496 254 212 212 0 chr6 119506360 119506426 -30010611 - ID4_ SINE ID -3 80 1 1 1496 349 330 27 76 chr6 119506428 119506651 -30010386 + L1MD LINE L1 5583 5794 -448 2 1496 707 148 0 35 chr6 119507212 119507473 -30009564 + (CCCTAA)n Simple_repeat Simple_repeat 1 251 0 2 1496 4083 90 124 21 chr6 119508036 119508473 -30008564 - RLTR33 LTR ERVK -1 677 187 2 1496 648 38 0 0 chr6 119508473 119508552 -30008485 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 2 1496 1085 30 82 0 chr6 119508552 119508687 -30008350 - B1_Mus1 SINE Alu -2 146 1 2 1496 4083 90 124 21 chr6 119508687 119508859 -30008178 - RLTR33 LTR ERVK -492 186 5 2 1496 285 196 18 0 chr6 119509049 119509105 -30007932 - ID4 SINE ID -26 57 1 2 1496 187 221 181 56 chr6 119509534 119509606 -30007431 + MIRm SINE MIR 136 216 -60 2 1496 279 79 0 0 chr6 119509804 119509842 -30007195 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 2 1496 1138 63 0 7 chr6 119509842 119509977 -30007060 - B1_Mus1 SINE Alu -13 135 1 2 1496 2600 73 0 3 chr6 119510726 119511054 -30005983 - ORR1A2 LTR MaLR 0 327 1 2 1496 290 133 11 211 chr6 119511463 119511558 -30005479 - B1F2 SINE Alu -58 91 16 3 1496 325 279 44 57 chr6 119511633 119511985 -30005052 - L1MB3 LINE L1 -362 5950 5558 3 1496 212 0 0 35 chr6 119512903 119512932 -30004105 + (TGGG)n Simple_repeat Simple_repeat 3 30 0 3 1496 261 57 0 0 chr6 119513564 119513599 -30003438 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1496 739 228 7 16 chr6 119513605 119513790 -30003247 - B3A SINE B2 -11 205 27 3 1496 3073 90 69 13 chr6 119513797 119514260 -30002777 - Lx2 LINE L1 -9 6988 6500 3 1496 416 276 29 36 chr6 119514336 119514475 -30002562 + B4A SINE B4 1 138 -154 3 1496 248 0 0 30 chr6 119514579 119514612 -30002425 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 3 1496 1139 68 0 7 chr6 119514612 119514760 -30002277 - B1_Mus2 SINE Alu 0 147 1 3 1496 950 134 7 32 chr6 119514764 119514918 -30002119 - B1_Mur4 SINE Alu 0 150 1 3 1496 180 275 121 36 chr6 119516754 119516837 -30000200 - MIRc SINE MIR -63 205 116 4 1496 238 319 14 80 chr6 119517368 119517529 -29999508 - MIRb SINE MIR -88 180 31 4 1496 348 201 61 78 chr6 119517896 119518026 -29999011 - MLT1A0 LTR MaLR -267 141 16 4 1496 411 255 20 0 chr6 119520101 119520199 -29996838 - PB1D10 SINE Alu -11 106 7 4 1496 186 190 23 23 chr6 119524707 119524750 -29992287 + L2a LINE L2 3384 3426 0 4 1496 189 0 0 0 chr6 119526495 119526516 -29990521 + (TGGGGG)n Simple_repeat Simple_repeat 5 25 0 4 1496 240 314 183 40 chr6 119526925 119527127 -29989910 + MIRb SINE MIR 38 268 0 4 1496 235 281 31 0 chr6 119527454 119527518 -29989519 - ID4_ SINE ID -14 69 4 4 1496 351 272 16 88 chr6 119527640 119527765 -29989272 - MTEb LTR MaLR -27 352 237 4 1496 228 299 104 0 chr6 119528970 119529114 -29987923 + L1M5 LINE L1 4437 4595 -1551 4 1496 392 314 126 9 chr6 119529157 119529372 -29987665 + L1M5 LINE L1 4815 5054 -1092 4 1496 493 273 36 17 chr6 119529372 119529514 -29987523 + PB1D10 SINE Alu 1 146 -3 5 1496 240 255 0 0 chr6 119529575 119529626 -29987411 - U6 snRNA snRNA -49 58 8 5 1496 324 263 26 13 chr6 119529633 119529710 -29987327 + L1M5 LINE L1 5081 5158 -988 4 1496 437 256 79 43 chr6 119529710 119529849 -29987188 + ID_B1 SINE B4 80 223 -1 5 1496 219 103 0 0 chr6 119529850 119529889 -29987148 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1496 283 271 98 0 chr6 119529951 119530073 -29986964 + L1M5 LINE L1 5152 5285 -861 4 1496 1162 43 0 0 chr6 119530073 119530211 -29986826 + B1_Mus2 SINE Alu 1 138 -9 5 1496 418 237 149 87 chr6 119530345 119530553 -29986484 - MER2 DNA MER2_type -38 307 87 5 1496 224 329 13 0 chr6 119530900 119530976 -29986061 - ID4 SINE ID -5 78 2 5 1496 499 241 110 59 chr6 119531520 119531793 -29985244 + RLTR15 LTR ERVK 40 326 -33 5 1496 1569 48 5 0 chr6 119532776 119532965 -29984072 - B2_Mm1t SINE B2 -2 191 2 5 1496 3007 64 2 18 chr6 119533549 119533949 -29983088 - L1Md_F2 LINE L1 -12 6570 6177 5 1496 224 0 65 0 chr6 119534184 119534215 -29982822 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 1496 230 154 0 0 chr6 119534890 119534929 -29982108 + ID4 SINE ID 26 64 -19 6 1497 193 319 110 0 chr6 119538102 119538193 -29978844 + MIRm SINE MIR 154 254 -22 6 1497 973 227 72 52 chr6 119538829 119539160 -29977877 + MLT1B LTR MaLR 3 357 -51 6 1497 360 43 0 0 chr6 119539972 119540018 -29977019 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1497 562 295 18 43 chr6 119540405 119540568 -29976469 - B4 SINE B4 -133 159 1 6 1497 31 0 0 0 chr6 119540568 119540599 -29976438 + AT_rich Low_complexity Low_complexity 1 31 0 6 1497 226 266 68 87 chr6 119541602 119541705 -29975332 - B3 SINE B2 -30 186 86 6 1497 2700 142 83 9 chr6 119541801 119542257 -29974780 + RLTR12A LTR ERVK 75 564 -4 6 1497 405 0 0 0 chr6 119542301 119542346 -29974691 + (TCTA)n Simple_repeat Simple_repeat 3 47 0 6 1497 446 307 121 55 chr6 119542347 119542619 -29974418 - B4 SINE B4 0 292 3 7 1497 839 229 105 20 chr6 119542727 119542981 -29974056 - ORR1D2 LTR MaLR -4 375 1 7 1497 424 340 75 19 chr6 119543047 119543260 -29973777 + B4A SINE B4 2 226 -66 7 1497 481 136 11 11 chr6 119543392 119543475 -29973562 + RMER1B Other Other 965 1048 -18 7 1497 1846 62 27 0 chr6 119543475 119543733 -29973304 + L1_Mus3 LINE L1 6374 6638 0 7 1497 23 0 0 0 chr6 119544200 119544223 -29972814 + AT_rich Low_complexity Low_complexity 1 23 0 7 1497 27 29 0 0 chr6 119544281 119544315 -29972722 + AT_rich Low_complexity Low_complexity 1 34 0 7 1497 613 288 71 50 chr6 119544323 119544604 -29972433 + B4 SINE B4 1 287 -5 7 1497 483 128 0 0 chr6 119544621 119544707 -29972330 + (CA)n Simple_repeat Simple_repeat 1 86 0 7 1497 439 270 60 0 chr6 119545276 119545376 -29971661 - RSINE1 SINE B4 -57 108 3 7 1497 252 0 0 0 chr6 119546219 119546247 -29970790 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1497 1725 192 102 17 chr6 119546519 119546880 -29970157 + MTC LTR MaLR 28 419 -2 8 1497 230 323 92 0 chr6 119547008 119547073 -29969964 - ID4 SINE ID -8 75 5 8 1497 310 222 85 12 chr6 119547082 119547164 -29969873 - PB1 SINE Alu 0 127 40 8 1497 267 210 20 10 chr6 119547318 119547419 -29969618 + (CATA)n Simple_repeat Simple_repeat 2 103 0 8 1497 367 255 36 45 chr6 119547624 119547735 -29969302 - PB1D10 SINE Alu -7 110 1 8 1497 255 220 28 50 chr6 119548248 119548348 -29968689 - PB1D7 SINE Alu -73 76 14 8 1497 516 261 29 0 chr6 119548536 119548674 -29968363 - RSINE1 SINE B4 -12 153 12 8 1497 511 314 7 48 chr6 119548675 119548803 -29968234 + B3A SINE B2 35 157 -41 8 1497 207 88 0 0 chr6 119548803 119548837 -29968200 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 8 1497 511 314 7 48 chr6 119548837 119548855 -29968182 + B3A SINE B2 158 175 -23 8 1497 226 64 0 78 chr6 119550069 119550120 -29966917 + (TCCCC)n Simple_repeat Simple_repeat 3 49 0 9 1497 825 153 76 0 chr6 119550569 119550700 -29966337 - B1_Mur2 SINE Alu 0 149 9 9 1497 426 270 0 50 chr6 119551163 119551284 -29965753 + PB1D7 SINE Alu 6 120 0 9 1497 364 306 48 5 chr6 119551385 119551492 -29965545 - PB1D10 SINE Alu -27 121 11 9 1497 188 200 0 18 chr6 119551671 119551727 -29965310 + GA-rich Low_complexity Low_complexity 1 55 0 9 1497 557 234 0 35 chr6 119552171 119552286 -29964751 - PB1D10 SINE Alu 0 117 7 9 1497 1471 28 79 0 chr6 119552298 119552316 -29964721 - B2_Mm1a SINE B2 0 193 176 9 1497 210 37 0 0 chr6 119552316 119552343 -29964694 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 9 1497 1471 28 79 0 chr6 119552343 119552502 -29964535 - B2_Mm1a SINE B2 -18 175 3 9 1497 606 312 62 12 chr6 119552518 119552758 -29964279 + MER58B DNA MER1_type 80 331 -10 9 1497 618 260 213 6 chr6 119552768 119552942 -29964095 + B3 SINE B2 3 212 -4 9 1497 3960 148 21 23 chr6 119553219 119553924 -29963113 + L1_Mur3 LINE L1 4413 5116 -764 1 1497 346 325 73 44 chr6 119553924 119554081 -29962956 + MLT1F LTR MaLR 312 482 -78 1 1497 1026 216 39 0 chr6 119554081 119554289 -29962748 + B3 SINE B2 1 216 0 1 1497 346 320 70 42 chr6 119554289 119554372 -29962665 + MLT1F LTR MaLR 466 548 0 1 1497 180 369 107 0 chr6 119554424 119554527 -29962510 + L2c LINE L2 3022 3135 -252 1 1497 1124 95 0 0 chr6 119555867 119556014 -29961023 + B1_Mus1 SINE Alu 2 148 0 1 1497 225 109 15 30 chr6 119556035 119556101 -29960936 + A-rich Low_complexity Low_complexity 1 65 0 1 1497 189 209 0 44 chr6 119557251 119557296 -29959741 - MIRc SINE MIR -141 127 85 1 1497 1184 297 198 28 chr6 119557721 119558232 -29958805 + Lx8 LINE L1 4444 5004 -843 1 1497 6288 142 27 24 chr6 119558232 119559263 -29957774 + Lx2 LINE L1 5964 6997 0 1 1497 1184 298 147 21 chr6 119559263 119560084 -29956953 + Lx8 LINE L1 5005 6027 -1617 1 1497 463 286 9 8 chr6 119561693 119561831 -29955206 + B1F SINE Alu 1 139 -10 1 1497 294 291 9 80 chr6 119561972 119562084 -29954953 - ID_B1 SINE B4 0 224 121 1 1497 788 173 8 0 chr6 119562098 119562225 -29954812 - B1_Mus1 SINE Alu 0 148 21 1 1497 317 175 105 0 chr6 119562538 119562595 -29954442 - RMER30 DNA MER1_type -115 87 25 1 1497 2916 270 118 74 chr6 119562597 119563495 -29953542 + Charlie12 DNA MER1_type 1413 2403 -470 1 1497 968 219 134 31 chr6 119563495 119563749 -29953288 + B4A SINE B4 3 282 -10 1 1497 2916 270 118 74 chr6 119563749 119564247 -29952790 + Charlie12 DNA MER1_type 2404 2870 -3 1 1497 1726 201 40 73 chr6 119564349 119564512 -29952525 + MTC LTR MaLR 3 171 -250 1 1497 5148 62 5 5 chr6 119564512 119565131 -29951906 + L1_Mus4 LINE L1 6016 6634 -2 1 1497 1726 201 40 73 chr6 119565131 119565392 -29951645 + MTC LTR MaLR 172 412 -9 1 1497 1384 246 90 21 chr6 119565494 119565872 -29951165 - MTB_Mm LTR MaLR 0 407 4 1 1497 189 0 0 0 chr6 119566083 119566104 -29950933 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1497 578 279 13 26 chr6 119566104 119566255 -29950782 - RSINE1 SINE B4 -13 152 4 1 1497 234 253 148 15 chr6 119566637 119566770 -29950267 - MIR SINE MIR -127 141 3 1 1497 658 196 36 0 chr6 119567136 119567248 -29949789 - PB1D10 SINE Alu 0 117 2 1 1497 225 0 0 0 chr6 119567259 119567284 -29949753 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1497 260 65 0 42 chr6 119567645 119567693 -29949344 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 1 1497 187 182 0 102 chr6 119569657 119569706 -29947331 - MIR SINE MIR -128 134 91 1 1497 537 321 116 39 chr6 119570589 119570900 -29946137 + MLT1A LTR MaLR 32 366 -8 1 1497 700 223 108 11 chr6 119571572 119571874 -29945163 + ORR1D2 LTR MaLR 5 370 0 1 1497 309 51 0 0 chr6 119572106 119572145 -29944892 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1497 439 346 20 48 chr6 119572173 119572422 -29944615 + MIR SINE MIR 19 260 -2 1 1497 278 250 23 45 chr6 119572652 119572740 -29944297 + MLT1A0 LTR MaLR 5 90 -275 1 1497 6784 109 13 8 chr6 119572911 119573879 -29943158 + Lx3A LINE L1 6007 6979 -2 1 1497 4794 139 36 33 chr6 119574083 119575004 -29942033 + RLTR25B LTR ERVK 3 1103 0 1 1497 274 262 15 15 chr6 119576277 119576327 -29940710 + ID_B1 SINE B4 79 128 -96 1 1497 417 284 0 38 chr6 119576327 119576433 -29940604 + RSINE1 SINE B4 2 103 -62 1 1497 583 188 98 0 chr6 119576464 119576576 -29940461 + B3 SINE B2 94 216 0 1 1497 420 306 183 49 chr6 119576835 119577185 -29939852 + MLT1A0-int LTR MaLR 1 397 -1092 1 1497 437 279 101 77 chr6 119577367 119577615 -29939422 - MER2 DNA MER2_type -5 340 87 1 1497 1178 256 65 0 chr6 119578150 119578443 -29938594 + Lx8 LINE L1 6688 6999 -474 1 1497 527 277 169 0 chr6 119578917 119579047 -29937990 + RSINE1 SINE B4 2 153 -12 1 1497 255 217 14 55 chr6 119579676 119579749 -29937288 + L1MEd LINE L1 16 85 -6034 1 1497 668 288 7 0 chr6 119580117 119580263 -29936774 + B1F1 SINE Alu 3 149 0 1 1497 198 0 0 0 chr6 119580428 119580450 -29936587 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1497 243 0 0 0 chr6 119581044 119581071 -29935966 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1497 4660 25 0 11 chr6 119581145 119581671 -29935366 - L1Md_F3 LINE L1 0 6584 6065 1 1497 34 24 0 0 chr6 119581811 119581852 -29935185 + AT_rich Low_complexity Low_complexity 1 41 0 1 1497 709 212 29 21 chr6 119581853 119581993 -29935044 + B1_Mur1 SINE Alu 2 142 -7 1 1497 269 220 20 0 chr6 119582392 119582442 -29934595 - RSINE1 SINE B4 -95 70 20 1 1497 313 218 193 114 chr6 119583915 119584029 -29933008 + RSINE1 SINE B4 43 165 0 1 1497 234 261 122 35 chr6 119584996 119585111 -29931926 + LTR31 LTR ERV1 478 602 -17 1 1497 3845 29 0 0 chr6 119587201 119587647 -29929390 + L1Md_A LINE L1 5141 5586 -297 1 1497 9095 27 0 0 chr6 119587648 119588642 -29928395 + L1Md_A LINE L1 5588 6581 -1 1 1497 795 179 7 29 chr6 119588725 119588863 -29928174 - B1_Mur3 SINE Alu -13 136 2 1 1497 9212 87 27 16 chr6 119588916 119590258 -29926779 - Lx3_Mus LINE L1 -3 7006 5650 1 1497 7650 75 24 12 chr6 119590259 119591344 -29925693 - L1_Mur1 LINE L1 -2285 3601 2504 1 1497 373 316 18 31 chr6 119592880 119593004 -29924033 + B4 SINE B4 2 123 -169 1 1497 1159 75 0 0 chr6 119593047 119593180 -29923857 + B1_Mm SINE Alu 1 133 -14 1 1497 756 86 0 0 chr6 119593184 119593289 -29923748 + (GGAAA)n Simple_repeat Simple_repeat 3 107 0 1 1497 373 306 21 2 chr6 119593337 119593443 -29923594 + RSINE1 SINE B4 3 107 -185 1 1497 789 11 0 0 chr6 119593458 119593548 -29923489 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 1497 377 253 12 0 chr6 119594549 119594632 -29922405 - 4.5SRNA scRNA scRNA -4 90 7 1 1497 22 35 0 0 chr6 119594701 119594730 -29922307 + AT_rich Low_complexity Low_complexity 1 29 0 1 1497 399 248 59 10 chr6 119594895 119594997 -29922040 + RSINE1 SINE B4 59 165 0 1 1497 718 253 53 42 chr6 119595056 119595226 -29921811 + B3A SINE B2 1 168 -30 1 1497 240 86 0 0 chr6 119595226 119595261 -29921776 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1497 718 239 27 146 chr6 119595261 119595310 -29921727 + B3A SINE B2 146 194 -1 1 1497 1066 76 61 0 chr6 119595377 119595509 -29921528 + B1_Mus2 SINE Alu 2 141 -6 1 1497 594 0 0 0 chr6 119595511 119595577 -29921460 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1497 236 242 185 15 chr6 119596679 119596809 -29920228 + L1M5 LINE L1 5143 5294 -852 1 1497 869 250 86 25 chr6 119597059 119597375 -29919662 + MTD LTR MaLR 15 419 0 1 1497 522 0 0 0 chr6 119598838 119598896 -29918141 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1497 327 39 269 0 chr6 119600077 119600129 -29916908 - MTC LTR MaLR -159 262 197 1 1497 552 30 0 0 chr6 119600129 119600195 -29916842 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 1 1497 231 67 204 82 chr6 119600215 119600264 -29916773 - B2_Mm2 SINE B2 -94 101 47 1 1497 1058 109 29 168 chr6 119600296 119600463 -29916574 - B2_Mm2 SINE B2 -14 181 43 1 1497 1138 76 14 20 chr6 119600463 119600610 -29916427 - B1_Mus2 SINE Alu 0 147 2 1 1497 1058 109 29 168 chr6 119600610 119600651 -29916386 - B2_Mm2 SINE B2 -153 42 2 1 1497 514 280 92 13 chr6 119600959 119601111 -29915926 - RSINE1 SINE B4 0 165 2 1 1497 7869 59 0 2 chr6 119601175 119602148 -29914889 + L1Md_F2 LINE L1 4616 5586 -297 1 1497 8406 52 16 0 chr6 119602148 119603117 -29913920 + L1Md_F2 LINE L1 5587 6570 -12 1 1497 713 289 13 0 chr6 119604302 119604461 -29912576 + RSINE1 SINE B4 2 162 -3 1 1497 3698 46 4 4 chr6 119604492 119604937 -29912100 - L1_Mus4 LINE L1 -546 6090 5646 1 1497 4417 75 18 2 chr6 119604937 119605483 -29911554 + L1_Mus4 LINE L1 6080 6634 -2 1 1497 3698 46 4 4 chr6 119605483 119605496 -29911541 - L1_Mus4 LINE L1 -991 5645 5632 1 1497 682 250 66 0 chr6 119605653 119605849 -29911188 + L1MB2 LINE L1 5917 6125 -46 1 1497 218 0 94 0 chr6 119605878 119605910 -29911127 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 1497 1074 104 0 0 chr6 119605910 119606044 -29910993 - B1_Mus2 SINE Alu -13 134 1 1 1497 311 191 31 0 chr6 119606114 119606186 -29910851 + B1_Mur4 SINE Alu 40 119 -1 1 1497 21 0 0 0 chr6 119606393 119606414 -29910623 + AT_rich Low_complexity Low_complexity 1 21 0 1 1497 381 317 77 10 chr6 119610166 119610373 -29906664 + MER2 DNA MER2_type 90 310 -35 1 1497 575 254 143 38 chr6 119610539 119610748 -29906289 - B4A SINE B4 -58 234 4 1 1497 465 228 147 13 chr6 119611535 119611697 -29905340 + ID_B1 SINE B4 1 183 -41 1 1497 486 70 0 0 chr6 119611697 119611768 -29905269 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 1 1497 181 0 0 65 chr6 119611853 119611884 -29905153 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1497 641 309 80 6 chr6 119612287 119612463 -29904574 + B3 SINE B2 5 193 -23 1 1497 534 300 91 16 chr6 119612497 119612751 -29904286 + B4A SINE B4 2 274 -18 1 1497 322 299 173 27 chr6 119612914 119613024 -29904013 + RSINE1 SINE B4 3 128 -37 1 1497 522 31 0 0 chr6 119613026 119613090 -29903947 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1497 690 205 45 132 chr6 119613329 119613571 -29903466 - ID_B1 SINE B4 -3 221 1 1 1497 454 258 11 11 chr6 119614358 119614452 -29902585 - PB1D10 SINE Alu -11 106 13 1 1497 198 0 0 0 chr6 119614671 119614693 -29902344 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1497 438 275 31 62 chr6 119615000 119615128 -29901909 + RSINE1 SINE B4 3 126 -39 1 1497 618 12 11 34 chr6 119615533 119615622 -29901415 + (GAAAA)n Simple_repeat Simple_repeat 4 90 0 1 1497 397 329 29 35 chr6 119615999 119616172 -29900865 - RMER15 LTR ERVL -57 518 347 1 1497 1143 311 105 53 chr6 119617267 119617874 -29899163 + MER82 DNA MER2_type 15 653 0 1 1497 379 250 0 145 chr6 119618736 119618881 -29898156 + RSINE1 SINE B4 5 128 -37 1 1497 227 206 62 16 chr6 119618896 119618960 -29898077 + L1M5 LINE L1 5772 5838 -402 1 1497 1187 152 36 14 chr6 119620162 119620382 -29896655 + URR1B DNA MER1_type 1 225 0 1 1497 21 0 0 0 chr6 119620612 119620633 -29896404 + AT_rich Low_complexity Low_complexity 1 21 0 2 1497 275 412 10 0 chr6 119620777 119620879 -29896158 + PB1D10 SINE Alu 7 109 -8 2 1497 240 100 0 0 chr6 119620896 119620936 -29896101 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1497 997 97 8 0 chr6 119621534 119621668 -29895369 + B1_Mus1 SINE Alu 2 136 -12 2 1497 270 0 0 0 chr6 119621669 119621699 -29895338 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1497 1031 242 118 3 chr6 119621923 119622255 -29894782 + ORR1D2 LTR MaLR 1 370 0 2 1497 405 228 22 0 chr6 119622366 119622458 -29894579 - B1_Mur1 SINE Alu -9 140 47 2 1497 216 186 0 23 chr6 119622587 119622631 -29894406 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1497 21 89 0 0 chr6 119622742 119622798 -29894239 + AT_rich Low_complexity Low_complexity 1 56 0 2 1497 597 190 212 28 chr6 119623258 119623362 -29893675 - ID_B1 SINE B4 -3 221 83 2 1497 186 43 0 0 chr6 119623362 119623385 -29893652 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1497 597 190 212 28 chr6 119623385 119623459 -29893578 - ID SINE ID -142 82 10 2 1497 475 295 101 0 chr6 119623554 119623683 -29893354 + RSINE1 SINE B4 2 143 -22 2 1497 198 0 0 0 chr6 119623758 119623780 -29893257 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 2 1497 207 0 0 0 chr6 119623825 119623848 -29893189 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1497 340 200 40 0 chr6 119623858 119623933 -29893104 - B1F1 SINE Alu -54 95 18 2 1497 192 153 0 66 chr6 119624940 119625031 -29892006 + (CACAA)n Simple_repeat Simple_repeat 5 89 0 2 1497 287 264 14 27 chr6 119625647 119625721 -29891316 - PB1 SINE Alu -28 99 27 2 1497 1203 54 0 0 chr6 119625914 119626061 -29890976 + B1_Mus2 SINE Alu 1 147 0 2 1497 302 306 187 16 chr6 119626593 119626716 -29890321 - B1F1 SINE Alu -4 145 2 2 1497 289 259 17 0 chr6 119626718 119626776 -29890261 + ID4_ SINE ID 25 83 0 2 1497 405 0 0 0 chr6 119626887 119626932 -29890105 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1497 732 186 27 27 chr6 119626986 119627135 -29889902 + B1_Mur4 SINE Alu 1 149 -1 2 1497 1113 235 175 3 chr6 119627155 119627463 -29889574 + ORR1D2 LTR MaLR 5 365 -5 2 1497 362 269 161 1 chr6 119627547 119627870 -29889167 - L1_Rod LINE L1 -180 5667 5337 2 1497 187 200 62 62 chr6 119628547 119628611 -29888426 - L4 LINE RTE -1684 345 282 2 1497 300 247 0 0 chr6 119628933 119629018 -29888019 + GA-rich Low_complexity Low_complexity 2 86 0 2 1497 326 349 38 72 chr6 119629069 119629359 -29887678 + ORR1E LTR MaLR 32 311 -48 2 1497 3519 98 47 2 chr6 119629812 119630322 -29886715 + L1_Mus3 LINE L1 6098 6630 -8 2 1497 435 245 191 26 chr6 119630423 119630612 -29886425 - MLT1A0 LTR MaLR -25 340 121 2 1497 398 247 244 43 chr6 119630748 119631027 -29886010 + MER119 DNA MER1_type 249 583 0 2 1497 261 83 0 0 chr6 119631457 119631493 -29885544 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1497 1262 27 0 0 chr6 119631495 119631641 -29885396 - B1_Mus1 SINE Alu 0 148 3 2 1497 384 265 247 4 chr6 119634576 119634826 -29882211 + MTEa LTR MaLR 1 311 -68 2 1497 719 203 99 26 chr6 119635602 119635794 -29881243 + B3 SINE B2 1 206 -10 2 1497 315 0 0 0 chr6 119635904 119635939 -29881098 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1497 3043 53 2 10 chr6 119636922 119637321 -29879716 + MTA_Mm LTR MaLR 1 396 0 2 1497 271 269 138 32 chr6 119637811 119637934 -29879103 - L1M2 LINE L1 -931 5212 5077 2 1497 358 228 33 0 chr6 119638015 119638107 -29878930 - L1M2 LINE L1 -1179 4964 4870 2 1497 9113 96 12 19 chr6 119638142 119639694 -29877343 + Lx3C LINE L1 5438 6974 -2 2 1497 300 259 148 64 chr6 119639730 119639932 -29877105 - Lx8 LINE L1 -30 7443 7225 2 1497 698 124 0 9 chr6 119639943 119640048 -29876989 - PB1D9 SINE Alu -3 117 14 2 1497 443 69 0 0 chr6 119640048 119640106 -29876931 + B1_Mus1 SINE Alu 1 58 -90 2 1497 868 230 36 5 chr6 119640371 119640563 -29876474 + B3A SINE B2 1 198 0 2 1497 1326 195 183 112 chr6 119641724 119642222 -29874815 + MT2A LTR ERVL 1 533 0 2 1497 471 271 82 126 chr6 119642725 119642907 -29874130 + B3 SINE B2 15 191 -25 2 1497 460 299 23 38 chr6 119644093 119644225 -29872812 - RSINE1 SINE B4 -21 144 15 2 1497 540 0 0 0 chr6 119645014 119645074 -29871963 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2 1497 278 237 2 139 chr6 119645098 119645184 -29871853 + B4 SINE B4 2 76 -89 2 1497 8327 35 1 6 chr6 119645758 119646759 -29870278 + L1Md_A LINE L1 5587 6582 0 2 1497 216 67 0 0 chr6 119646769 119646799 -29870238 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1497 225 178 0 0 chr6 119646898 119646943 -29870094 + T-rich Low_complexity Low_complexity 1 45 0 2 1497 25 0 0 0 chr6 119646954 119646979 -29870058 + AT_rich Low_complexity Low_complexity 1 25 0 2 1497 324 0 0 0 chr6 119647296 119647332 -29869705 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1497 332 342 82 0 chr6 119647804 119647950 -29869087 - L1ME3A LINE L1 -1 6172 6015 2 1497 839 327 109 30 chr6 119648596 119648962 -29868075 + Tigger7 DNA MER2_type 11 405 -2086 2 1497 528 232 116 0 chr6 119648960 119649098 -29867939 + Tigger7 DNA MER2_type 2239 2392 -99 2 1497 2050 98 47 3 chr6 119649254 119649550 -29867487 - RLTR27 LTR ERVK 0 309 1 2 1497 241 349 111 0 chr6 119649571 119649697 -29867340 - B1F1 SINE Alu -5 144 5 2 1497 283 307 11 43 chr6 119649610 119649702 -29867335 - ID_B1 SINE B4 -46 178 90 2 1497 350 195 0 12 chr6 119649703 119649786 -29867251 + CT-rich Low_complexity Low_complexity 2 83 0 2 1497 254 159 270 0 chr6 119649797 119649860 -29867177 - PB1D9 SINE Alu 0 120 41 2 1497 371 319 34 94 chr6 119649814 119650009 -29867028 - RSINE1 SINE B4 -120 172 3 2 1497 254 231 75 21 chr6 119650512 119650605 -29866432 + L1M4 LINE L1 3813 3910 -2236 2 1497 220 217 43 0 chr6 119650605 119650674 -29866363 + (TTATA)n Simple_repeat Simple_repeat 5 76 0 2 1497 238 203 189 0 chr6 119650792 119650866 -29866171 + L1M4 LINE L1 4040 4127 -2019 2 1497 277 306 64 6 chr6 119650887 119651058 -29865979 + Lx9 LINE L1 7319 7499 -145 2 1497 226 180 20 0 chr6 119651076 119651126 -29865911 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1497 7379 27 0 0 chr6 119651165 119652063 -29864974 + L1Md_F3 LINE L1 5634 6531 -53 2 1497 492 273 109 0 chr6 119652749 119652877 -29864160 - RSINE1 SINE B4 -22 143 2 2 1497 764 130 137 43 chr6 119653252 119653413 -29863624 - URR1A DNA MER1_type -6 220 45 2 1497 30 45 0 0 chr6 119654330 119654374 -29862663 + AT_rich Low_complexity Low_complexity 1 44 0 2 1497 705 244 41 20 chr6 119654375 119654572 -29862465 - B3 SINE B2 -15 201 1 2 1497 332 247 117 0 chr6 119655459 119655536 -29861501 + PB1 SINE Alu 1 86 -41 2 1497 276 53 0 0 chr6 119655679 119655717 -29861320 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1497 198 115 58 0 chr6 119655727 119655779 -29861258 + CT-rich Low_complexity Low_complexity 1 55 0 2 1497 260 347 20 12 chr6 119655942 119656075 -29860962 - MIR SINE MIR -40 228 96 2 1497 21 0 0 0 chr6 119658466 119658487 -29858550 + AT_rich Low_complexity Low_complexity 1 21 0 2 1497 276 346 0 90 chr6 119658518 119658607 -29858430 - RSINE1 SINE B4 -31 134 54 2 1497 182 384 71 0 chr6 119658887 119658999 -29858038 - MIRm SINE MIR -155 121 2 2 1497 21 57 0 0 chr6 119660089 119660124 -29856913 + AT_rich Low_complexity Low_complexity 1 35 0 2 1497 1083 85 0 0 chr6 119660262 119660403 -29856634 + B1_Mus1 SINE Alu 2 142 -6 2 1497 461 127 13 0 chr6 119660403 119660482 -29856555 + (GAAAA)n Simple_repeat Simple_repeat 1 80 0 2 1497 181 318 0 0 chr6 119661490 119661534 -29855503 - L2c LINE L2 -70 3317 3274 2 1497 1053 184 138 49 chr6 119662584 119662952 -29854085 + MTD LTR MaLR 1 419 0 2 1497 434 245 90 93 chr6 119664719 119664788 -29852249 + L1MA6 LINE L1 4939 5014 -1129 2 1497 471 234 26 18 chr6 119664788 119664901 -29852136 + PB1D7 SINE Alu 1 114 -6 2 1497 587 262 109 71 chr6 119664901 119665634 -29851403 + L1MA6 LINE L1 5015 5775 -525 2 1497 338 327 20 10 chr6 119665669 119665771 -29851266 + RSINE1 SINE B4 41 143 -22 2 1497 285 197 0 0 chr6 119666040 119666106 -29850931 + GA-rich Low_complexity Low_complexity 4 69 0 2 1497 238 237 155 0 chr6 119666131 119666228 -29850809 + L1MA6 LINE L1 5850 5961 -339 2 1497 342 0 0 0 chr6 119666920 119666958 -29850079 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1497 402 21 0 0 chr6 119667098 119667145 -29849892 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 2 1497 364 293 50 8 chr6 119667708 119667911 -29849126 + RLTR42-int LTR ERVK 1633 1790 -3732 2 1498 1123 208 292 0 chr6 119669092 119669428 -29847609 + MT2A LTR ERVL 9 441 -92 2 1498 900 264 42 49 chr6 119670152 119670415 -29846622 - MTE2b LTR MaLR 0 379 119 2 1498 524 235 158 13 chr6 119671158 119671330 -29845707 + B3 SINE B2 21 216 0 2 1498 1191 48 0 20 chr6 119671368 119671517 -29845520 + B1_Mus2 SINE Alu 2 147 0 2 1498 952 200 75 11 chr6 119671536 119671723 -29845314 + B3 SINE B2 1 199 -17 2 1498 270 0 0 0 chr6 119671728 119671758 -29845279 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2 1498 31 26 0 0 chr6 119671764 119671802 -29845235 + AT_rich Low_complexity Low_complexity 1 38 0 2 1498 463 284 47 16 chr6 119672871 119673000 -29844037 + B1F SINE Alu 17 149 0 2 1498 285 210 11 129 chr6 119673414 119673507 -29843530 - ID4 SINE ID 0 83 2 2 1498 1414 289 65 20 chr6 119673692 119674201 -29842836 - Lx5 LINE L1 -18 7032 6501 2 1498 250 59 0 73 chr6 119674201 119674256 -29842781 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 2 1498 550 285 73 12 chr6 119674350 119674595 -29842442 + L1M2 LINE L1 4796 5055 -1088 2 1498 230 216 95 79 chr6 119674651 119674777 -29842260 + L1M2 LINE L1 5133 5260 -883 2 1498 1009 99 42 0 chr6 119675008 119675150 -29841887 + B1_Mus1 SINE Alu 1 148 0 3 1498 216 0 0 0 chr6 119675150 119675174 -29841863 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1498 435 189 179 52 chr6 119675231 119675443 -29841594 + L1M2 LINE L1 5382 5620 -671 2 1498 382 346 0 10 chr6 119675443 119675545 -29841492 + B1F SINE Alu 33 133 -16 3 1498 345 186 61 10 chr6 119675586 119675684 -29841353 + B1F1 SINE Alu 45 147 -2 3 1498 279 0 0 0 chr6 119677836 119677867 -29839170 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1498 380 225 15 63 chr6 119678006 119678152 -29838885 + L1M3 LINE L1 3882 4022 -2121 3 1498 316 268 50 7 chr6 119678147 119678286 -29838751 - L1MD LINE L1 -2318 3828 3684 3 1498 1132 75 0 0 chr6 119678302 119678449 -29838588 - B1_Mus1 SINE Alu -1 147 1 3 1498 395 361 12 19 chr6 119678481 119678642 -29838395 - RSINE1 SINE B4 0 165 6 3 1498 255 318 8 8 chr6 119678657 119678787 -29838250 - L1MD LINE L1 -2455 3691 3562 3 1498 699 199 35 21 chr6 119679030 119679174 -29837863 + B1_Mur1 SINE Alu 3 148 -1 3 1498 1083 65 50 0 chr6 119679310 119679449 -29837588 - B1_Mm SINE Alu -1 146 1 3 1498 3232 120 37 20 chr6 119680453 119681014 -29836023 + Lx LINE L1 6053 6623 -31 3 1498 231 36 0 0 chr6 119681014 119681042 -29835995 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 3 1498 234 0 0 0 chr6 119681042 119681067 -29835970 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 3 1498 664 322 5 0 chr6 119681232 119681440 -29835597 - B3 SINE B2 -3 213 5 3 1498 1741 233 70 23 chr6 119681583 119681969 -29835068 - MTD LTR MaLR -13 406 3 3 1498 381 327 82 35 chr6 119682123 119682608 -29834429 - L1M2 LINE L1 -4237 2612 2105 3 1498 217 329 0 28 chr6 119683398 119683470 -29833567 + PB1D10 SINE Alu 48 117 0 3 1498 751 239 12 52 chr6 119684477 119684649 -29832388 - RSINE1 SINE B4 0 165 1 3 1498 855 231 28 0 chr6 119685206 119685388 -29831649 + MTEa LTR MaLR 193 379 0 3 1498 4247 284 75 62 chr6 119685390 119686946 -29830091 + MTEa-int LTR MaLR 3 1578 -2 3 1498 195 162 0 0 chr6 119687065 119687102 -29829935 + GA-rich Low_complexity Low_complexity 3 39 0 3 1498 2383 67 17 28 chr6 119687105 119687458 -29829579 - L1_Mus3 LINE L1 -2 6636 6288 3 1498 350 280 80 43 chr6 119687473 119687611 -29829426 + MTEa LTR MaLR 166 308 -71 3 1498 482 115 48 9 chr6 119687657 119687762 -29829275 + G-rich Low_complexity Low_complexity 3 111 0 3 1498 261 207 227 11 chr6 119687774 119687862 -29829175 + PB1D7 SINE Alu 12 118 -2 3 1498 554 296 92 39 chr6 119687866 119688126 -29828911 + B4A SINE B4 1 274 -18 3 1498 1883 246 17 10 chr6 119688667 119689069 -29827968 + MTD LTR MaLR 1 405 -14 3 1498 558 254 63 42 chr6 119689192 119689381 -29827656 + B4A SINE B4 84 276 -16 3 1498 225 65 0 0 chr6 119689406 119689437 -29827600 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1498 728 310 70 15 chr6 119690051 119690251 -29826786 + ID_B1 SINE B4 6 216 -8 3 1498 915 260 50 8 chr6 119691218 119691547 -29825490 + Lx9 LINE L1 5542 5916 -1728 3 1498 1016 205 4 61 chr6 119691933 119692028 -29825009 + B3 SINE B2 1 94 -122 3 1498 1074 121 66 0 chr6 119692028 119692210 -29824827 - B2_Mm2 SINE B2 0 195 2 3 1498 1016 205 4 61 chr6 119692210 119692343 -29824694 + B3 SINE B2 95 216 0 3 1498 595 211 97 8 chr6 119693958 119694092 -29822945 + B1_Mur2 SINE Alu 1 146 -3 3 1498 551 294 73 85 chr6 119694329 119694645 -29822392 - ORR1E LTR MaLR -5 354 43 3 1498 447 68 0 0 chr6 119695296 119695355 -29821682 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1498 314 260 11 0 chr6 119695855 119695937 -29821100 + B3A SINE B2 11 96 -99 3 1498 24 53 0 0 chr6 119695941 119695979 -29821058 + AT_rich Low_complexity Low_complexity 1 38 0 3 1498 291 54 0 0 chr6 119695980 119696017 -29821020 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1498 775 245 77 0 chr6 119696041 119696196 -29820841 - B3A SINE B2 -30 168 2 3 1498 1091 96 0 0 chr6 119696251 119696397 -29820640 + B1_Mus1 SINE Alu 3 148 0 3 1498 818 191 7 0 chr6 119696555 119696696 -29820341 + B1_Mur4 SINE Alu 2 143 -7 3 1498 678 225 11 7 chr6 119696702 119696970 -29820067 + GA-rich Low_complexity Low_complexity 1 268 0 3 1498 224 327 0 38 chr6 119697389 119697494 -29819543 + PB1D7 SINE Alu 18 118 -2 3 1498 751 271 36 4 chr6 119697535 119697809 -29819228 + L1M3 LINE L1 3889 4171 -1969 3 1498 1346 319 75 23 chr6 119697809 119698515 -29818522 + Lx8 LINE L1 6438 7180 -293 3 1498 1232 196 244 12 chr6 119698634 119698974 -29818063 + MTD LTR MaLR 1 419 0 3 1498 277 298 0 35 chr6 119699611 119699698 -29817339 + MTEb LTR MaLR 279 362 -17 3 1498 651 215 203 0 chr6 119700197 119700374 -29816663 + ID_B1 SINE B4 5 217 -7 3 1498 1381 78 0 30 chr6 119700808 119701007 -29816030 + B2_Mm2 SINE B2 2 194 -1 3 1498 221 283 17 0 chr6 119702031 119702091 -29814946 + B1_Mus1 SINE Alu 23 83 -65 3 1498 509 137 0 0 chr6 119702093 119702166 -29814871 + MT2A LTR ERVL 1 73 -460 3 1498 601 261 118 0 chr6 119702167 119702362 -29814675 + MT2B LTR ERVL 339 556 -45 3 1498 218 114 68 0 chr6 119702367 119702411 -29814626 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 3 1498 296 214 0 0 chr6 119702455 119702511 -29814526 + ID_B1 SINE B4 164 219 -5 3 1498 1073 185 11 0 chr6 119702653 119702837 -29814200 + B3 SINE B2 4 189 -27 3 1498 191 286 0 31 chr6 119704012 119704077 -29812960 - L2c LINE L2 -10 3377 3315 3 1498 361 286 0 13 chr6 119704355 119704433 -29812604 + ID_B1 SINE B4 81 157 -67 3 1498 180 0 0 0 chr6 119704436 119704456 -29812581 + (TGGA)n Simple_repeat Simple_repeat 1 20 0 3 1498 21 71 0 0 chr6 119704696 119704738 -29812299 + AT_rich Low_complexity Low_complexity 1 42 0 3 1498 250 280 0 0 chr6 119704738 119704831 -29812206 + L1_Mur3 LINE L1 1666 1758 -4122 3 1498 323 144 30 0 chr6 119704984 119705060 -29811977 + B1_Mur3 SINE Alu 33 117 -32 3 1498 225 0 0 0 chr6 119705063 119705088 -29811949 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1498 234 229 33 0 chr6 119705578 119705639 -29811398 + L1MA4 LINE L1 4902 4964 -1179 3 1498 225 0 0 0 chr6 119705648 119705673 -29811364 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1498 1935 166 89 45 chr6 119705678 119706173 -29810864 + RMER4B LTR ERVK 14 466 0 3 1498 624 259 157 9 chr6 119706453 119706784 -29810253 + L1MA4 LINE L1 5505 5884 -416 3 1498 371 361 39 153 chr6 119706992 119707111 -29809926 + Tigger7 DNA MER2_type 1 104 -2387 3 1498 358 248 78 10 chr6 119707111 119707213 -29809824 + PB1D10 SINE Alu 1 109 -8 3 1498 371 361 39 153 chr6 119707213 119707348 -29809689 + Tigger7 DNA MER2_type 105 226 -2265 3 1498 22 35 0 0 chr6 119707393 119707422 -29809615 + AT_rich Low_complexity Low_complexity 1 29 0 3 1498 634 273 0 0 chr6 119707422 119707554 -29809483 - RSINE1 SINE B4 0 165 34 3 1498 21 82 0 0 chr6 119707714 119707763 -29809274 + AT_rich Low_complexity Low_complexity 1 49 0 3 1498 853 231 0 18 chr6 119708272 119708435 -29808602 + B3 SINE B2 55 214 -2 3 1498 672 226 28 28 chr6 119708844 119709026 -29808011 + B3A SINE B2 4 185 -13 3 1498 368 329 20 40 chr6 119709243 119709395 -29807642 + RSINE1 SINE B4 11 159 -6 3 1498 22 0 0 0 chr6 119711434 119711456 -29805581 + AT_rich Low_complexity Low_complexity 1 22 0 3 1498 502 200 178 0 chr6 119712056 119712191 -29804846 + RSINE1 SINE B4 3 161 -4 3 1498 587 181 130 30 chr6 119712649 119712780 -29804257 + B1_Mur4 SINE Alu 6 149 -1 3 1498 322 252 26 61 chr6 119712793 119712907 -29804130 - MLT1C LTR MaLR -25 442 333 3 1498 510 279 62 94 chr6 119712974 119713358 -29803679 + ORR1D1 LTR MaLR 1 372 -2 3 1498 890 241 34 10 chr6 119714457 119714662 -29802375 + B3 SINE B2 1 210 -6 3 1498 1227 178 18 0 chr6 119714805 119715024 -29802013 - URR1B DNA MER1_type -2 223 1 3 1498 213 65 0 0 chr6 119715030 119715061 -29801976 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1498 685 203 191 6 chr6 119715085 119715263 -29801774 + B3 SINE B2 1 211 -5 3 1498 316 258 31 51 chr6 119715372 119715470 -29801567 + L1MD LINE L1 5196 5291 -855 3 1498 333 329 90 23 chr6 119715517 119715694 -29801343 - ORR1E LTR MaLR 0 359 171 3 1498 277 288 55 0 chr6 119716347 119716420 -29800617 + MTEb LTR MaLR 35 111 -248 3 1498 416 261 66 25 chr6 119716498 119716620 -29800417 + MTEb LTR MaLR 249 375 -4 3 1498 309 196 3 0 chr6 119716820 119716887 -29800150 - ORR1E LTR MaLR -310 68 1 3 1498 380 180 0 101 chr6 119716887 119716985 -29800052 + B4A SINE B4 205 292 0 3 1498 368 247 11 34 chr6 119717495 119717583 -29799454 - MTE-int LTR MaLR -1246 334 249 3 1498 277 245 0 0 chr6 119717587 119717640 -29799397 + ORR1D2 LTR MaLR 1 53 -317 3 1498 261 267 15 14 chr6 119717642 119717733 -29799304 + MTEb LTR MaLR 7 94 -300 3 1498 2114 35 0 0 chr6 119717735 119717994 -29799043 + L1Md_F2 LINE L1 5998 6256 -326 3 1498 21 0 0 0 chr6 119717994 119718015 -29799022 + AT_rich Low_complexity Low_complexity 1 21 0 3 1498 1015 289 141 40 chr6 119718286 119718480 -29798557 + MTE-int LTR MaLR 42 249 -1331 3 1498 1066 240 74 60 chr6 119718480 119718830 -29798207 - ORR1E LTR MaLR 0 359 5 3 1498 1792 298 114 40 chr6 119718830 119719807 -29797230 + MTE-int LTR MaLR 250 1363 -217 3 1498 301 278 99 27 chr6 119720249 119720360 -29796677 - PB1D7 SINE Alu -1 119 1 3 1498 636 192 76 157 chr6 119720373 119720583 -29796454 + MTE-int LTR MaLR 1354 1546 -34 3 1498 414 327 54 29 chr6 119720624 119720886 -29796151 + MTEb LTR MaLR 79 379 0 3 1498 617 245 14 7 chr6 119720926 119721066 -29795971 + B1_Mur2 SINE Alu 1 141 -8 3 1498 613 214 135 0 chr6 119721199 119721325 -29795712 + B1_Mur4 SINE Alu 2 144 -6 3 1498 270 0 0 0 chr6 119721326 119721356 -29795681 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 3 1498 188 319 117 59 chr6 119721430 119721594 -29795443 - MIR SINE MIR -59 203 34 3 1498 423 274 306 4 chr6 119721607 119721882 -29795155 - Lx8 LINE L1 -1 7472 7115 3 1498 1469 78 0 5 chr6 119721894 119722086 -29794951 - B2_Mm2 SINE B2 -4 191 1 4 1498 729 250 168 8 chr6 119722301 119722551 -29794486 + B4 SINE B4 1 290 -2 4 1498 564 89 0 0 chr6 119723365 119723444 -29793593 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 1498 734 213 181 0 chr6 119724254 119724442 -29792595 - URR1B DNA MER1_type -3 222 1 4 1498 298 252 126 0 chr6 119724691 119724794 -29792243 + PB1D9 SINE Alu 2 117 -3 4 1498 519 239 25 17 chr6 119725156 119725275 -29791762 - ID_B1 SINE B4 -18 206 87 4 1498 439 330 187 12 chr6 119725309 119725555 -29791482 - B4A SINE B4 -2 290 2 4 1498 204 67 0 0 chr6 119725576 119725606 -29791431 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 4 1498 773 98 0 9 chr6 119725606 119725719 -29791318 - B1_Mur4 SINE Alu -8 142 31 4 1498 321 267 11 43 chr6 119725644 119725738 -29791299 - MT2B LTR ERVL -344 257 167 4 1498 284 314 68 10 chr6 119726479 119726582 -29790455 + PB1D10 SINE Alu 1 109 -8 4 1498 30 21 0 21 chr6 119728645 119728666 -29788371 + AT_rich Low_complexity Low_complexity 1 21 0 4 1498 801 216 0 7 chr6 119728666 119728815 -29788222 - B1F2 SINE Alu -1 148 1 4 1498 30 21 0 21 chr6 119728815 119728841 -29788196 + AT_rich Low_complexity Low_complexity 1 26 0 4 1498 496 262 28 18 chr6 119730184 119730293 -29786744 + PB1 SINE Alu 13 122 -5 4 1498 1253 244 89 16 chr6 119731496 119731812 -29785225 + MTEa LTR MaLR 41 379 0 4 1498 216 222 0 0 chr6 119732210 119732246 -29784791 + PB1D9 SINE Alu 76 111 -9 4 1498 477 0 0 0 chr6 119732246 119732299 -29784738 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1498 320 309 43 0 chr6 119732410 119732504 -29784533 + B1F SINE Alu 1 98 -51 4 1498 679 296 21 91 chr6 119732525 119732879 -29784158 + MTEa LTR MaLR 7 346 -73 4 1498 245 250 0 0 chr6 119732943 119732991 -29784046 - MIR SINE MIR -17 245 198 4 1498 597 52 0 0 chr6 119732995 119733072 -29783965 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 4 1498 190 306 20 0 chr6 119733077 119733126 -29783911 - MIR SINE MIR -139 123 74 4 1498 541 248 76 8 chr6 119733532 119733650 -29783387 - B1_Mur1 SINE Alu -18 131 6 4 1498 307 299 69 81 chr6 119733543 119733703 -29783334 - ID_B1 SINE B4 -26 198 41 4 1498 927 181 20 15 chr6 119734113 119734309 -29782728 + MTC-int LTR MaLR 1060 1256 -2 4 1498 466 263 0 66 chr6 119734311 119734433 -29782604 + MTC LTR MaLR 1 114 -307 4 1498 622 235 200 6 chr6 119734540 119734720 -29782317 + B3 SINE B2 2 216 0 4 1498 306 73 0 0 chr6 119734780 119734821 -29782216 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1498 292 278 19 0 chr6 119735372 119735455 -29781582 + L2b LINE L2 2941 3024 -351 4 1498 192 200 0 0 chr6 119735838 119735883 -29781154 + CT-rich Low_complexity Low_complexity 2 46 0 4 1498 652 242 27 33 chr6 119736242 119736425 -29780612 + B3 SINE B2 3 192 -1 4 1498 21 0 0 0 chr6 119737266 119737287 -29779750 + AT_rich Low_complexity Low_complexity 1 21 0 4 1498 250 301 673 0 chr6 119737679 119737813 -29779224 + B4 SINE B4 1 225 -67 4 1498 688 178 13 27 chr6 119737814 119737964 -29779073 + B1_Mus1 SINE Alu 1 148 0 4 1498 204 167 0 0 chr6 119737967 119738015 -29779022 + A-rich Low_complexity Low_complexity 1 48 0 4 1498 234 0 0 0 chr6 119738058 119738084 -29778953 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1498 264 307 0 26 chr6 119738089 119738104 -29778933 + B4 SINE B4 77 150 -141 4 1498 283 279 0 0 chr6 119738104 119738165 -29778872 + PB1D7 SINE Alu 5 65 -55 4 1498 211 275 11 28 chr6 119738217 119738577 -29778460 + GA-rich Low_complexity Low_complexity 1 353 0 4 1498 409 215 69 0 chr6 119738596 119738696 -29778341 + PB1D9 SINE Alu 5 113 -7 4 1498 26 0 0 0 chr6 119738700 119738726 -29778311 + AT_rich Low_complexity Low_complexity 1 26 0 4 1498 304 312 0 0 chr6 119738898 119738978 -29778059 + ID4_ SINE ID 1 80 -3 4 1498 21 36 0 0 chr6 119738987 119739015 -29778022 + AT_rich Low_complexity Low_complexity 1 28 0 4 1498 4806 115 41 16 chr6 119739129 119739958 -29777079 - Lx5 LINE L1 -205 5672 4823 4 1498 5665 173 72 13 chr6 119739956 119741244 -29775793 + Lx5 LINE L1 5659 7058 0 4 1498 525 231 0 93 chr6 119741699 119741828 -29775209 - ID_B1 SINE B4 -1 223 107 4 1498 658 259 14 7 chr6 119742127 119742275 -29774762 + B1_Mur1 SINE Alu 1 149 0 4 1498 231 36 0 0 chr6 119742325 119742353 -29774684 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1498 1174 54 7 0 chr6 119742463 119742610 -29774427 + B1_Mus1 SINE Alu 1 148 0 4 1498 25 31 0 0 chr6 119742892 119742924 -29774113 + AT_rich Low_complexity Low_complexity 1 32 0 4 1498 292 311 54 0 chr6 119743588 119743662 -29773375 - B1F2 SINE Alu -62 87 10 4 1498 228 255 0 0 chr6 119744090 119744141 -29772896 + B1_Mur2 SINE Alu 92 142 -7 4 1498 390 169 12 12 chr6 119744752 119744836 -29772201 - B1_Mur4 SINE Alu -25 125 42 4 1498 322 193 0 34 chr6 119744866 119744925 -29772112 - PB1D9 SINE Alu -61 59 3 4 1498 262 286 0 114 chr6 119744925 119744953 -29772084 - B4A SINE B4 -205 87 69 4 1498 555 239 0 0 chr6 119744972 119745089 -29771948 - PB1D9 SINE Alu -3 117 1 4 1498 1877 173 26 121 chr6 119745272 119745491 -29771546 + MTD LTR MaLR 2 196 -223 4 1498 1481 68 11 0 chr6 119745491 119745682 -29771355 + B2_Mm1t SINE B2 1 193 0 4 1498 1877 173 26 121 chr6 119745682 119745885 -29771152 + MTD LTR MaLR 197 387 -32 4 1498 3128 19 59 0 chr6 119745885 119746259 -29770778 + MTA_Mm LTR MaLR 1 396 0 4 1498 1877 173 26 121 chr6 119746259 119746288 -29770749 + MTD LTR MaLR 388 411 -8 4 1498 456 215 0 0 chr6 119747803 119747910 -29769127 + (TA)n Simple_repeat Simple_repeat 1 107 0 4 1498 261 321 107 0 chr6 119747942 119748026 -29769011 + B1F1 SINE Alu 1 93 -56 4 1498 354 303 50 15 chr6 119748039 119748240 -29768797 - L1MB1 LINE L1 -14 6154 5947 4 1498 1098 268 29 32 chr6 119748294 119748671 -29768366 + MTE2b LTR MaLR 2 377 -2 4 1498 1198 88 6 6 chr6 119748682 119748853 -29768184 + B2_Mm2 SINE B2 2 172 -23 4 1498 1283 27 0 0 chr6 119748987 119749134 -29767903 - B1_Mm SINE Alu 0 147 1 4 1498 542 283 12 137 chr6 119749201 119749245 -29767792 - RSINE1 SINE B4 -15 150 120 4 1498 912 106 42 14 chr6 119749245 119749388 -29767649 - B1_Mus1 SINE Alu 0 148 2 4 1498 542 283 12 137 chr6 119749388 119749511 -29767526 - RSINE1 SINE B4 -46 119 4 4 1498 243 0 0 0 chr6 119749534 119749561 -29767476 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1498 274 146 0 0 chr6 119749610 119749651 -29767386 + B3A SINE B2 2 42 -156 4 1498 847 297 120 63 chr6 119749982 119750902 -29766135 - L1MA4A LINE L1 -308 5995 4963 4 1498 654 236 7 7 chr6 119750902 119751043 -29765994 - B1_Mur1 SINE Alu -7 142 2 4 1498 847 296 120 65 chr6 119751043 119751175 -29765862 - L1MA4A LINE L1 -885 4962 4831 4 1498 453 258 64 7 chr6 119751215 119751350 -29765687 + MTEa LTR MaLR 247 379 0 4 1498 1910 178 93 3 chr6 119751431 119751808 -29765229 - MTD LTR MaLR -8 411 1 4 1498 621 280 96 48 chr6 119752021 119752272 -29764765 + B4A SINE B4 14 276 -16 4 1498 294 143 0 0 chr6 119752297 119752346 -29764691 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1498 269 281 0 15 chr6 119752689 119752754 -29764283 + polypurine Low_complexity Low_complexity 5 68 0 4 1498 271 221 51 25 chr6 119752756 119752835 -29764202 - MER105 DNA DNA -103 101 21 4 1498 22 0 0 0 chr6 119752858 119752880 -29764157 + GC_rich Low_complexity Low_complexity 1 22 0 4 1498 228 239 156 42 chr6 119752906 119752932 -29764105 - ID_B1 SINE B4 -116 108 2 4 1498 265 257 86 0 chr6 119752932 119753002 -29764035 - ID4_ SINE ID -6 77 2 4 1498 473 276 92 0 chr6 119753383 119753546 -29763491 - B3A SINE B2 -18 180 3 4 1498 289 288 41 0 chr6 119753603 119753676 -29763361 + ID4 SINE ID 4 79 -4 4 1498 437 221 76 56 chr6 119755191 119755335 -29761702 + B1F2 SINE Alu 3 149 0 4 1498 732 188 45 0 chr6 119756027 119756160 -29760877 - B1_Mus1 SINE Alu -8 140 2 4 1498 22 35 0 0 chr6 119756162 119756191 -29760846 + AT_rich Low_complexity Low_complexity 1 29 0 4 1498 508 250 0 20 chr6 119756237 119756339 -29760698 + PB1D9 SINE Alu 21 120 0 4 1498 352 266 13 0 chr6 119756386 119756465 -29760572 - ID_B1 SINE B4 -6 218 139 4 1498 939 255 5 19 chr6 119756466 119756674 -29760363 + B3 SINE B2 1 205 -11 4 1498 285 338 175 26 chr6 119756700 119756928 -29760109 + MLT1N2 LTR MaLR 79 340 -222 4 1498 414 0 0 0 chr6 119757803 119757849 -29759188 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1498 1068 185 26 11 chr6 119757901 119758092 -29758945 + ORR1D1 LTR MaLR 170 363 -11 4 1498 415 235 92 0 chr6 119758115 119758213 -29758824 + PB1D9 SINE Alu 4 110 -10 4 1498 36 0 0 0 chr6 119758224 119758260 -29758777 + AT_rich Low_complexity Low_complexity 1 36 0 4 1498 302 327 24 81 chr6 119758456 119758579 -29758458 + PB1D10 SINE Alu 2 117 0 4 1498 364 245 129 7 chr6 119758749 119758889 -29758148 + RSINE1 SINE B4 6 162 -3 4 1498 503 291 28 22 chr6 119758924 119759103 -29757934 + B3A SINE B2 1 180 -18 4 1498 35 24 0 0 chr6 119759704 119759746 -29757291 + AT_rich Low_complexity Low_complexity 1 42 0 4 1498 351 323 10 0 chr6 119760019 119760118 -29756919 - B1F1 SINE Alu 0 149 50 4 1498 832 263 30 10 chr6 119760229 119760429 -29756608 - B3 SINE B2 0 216 13 4 1498 1840 144 41 32 chr6 119760429 119760744 -29756293 + ORR1A3 LTR MaLR 1 318 -8 4 1498 277 363 62 31 chr6 119760806 119760847 -29756190 + ID SINE ID 35 79 -145 4 1498 278 324 77 51 chr6 119760847 119760964 -29756073 + PB1D10 SINE Alu 1 120 0 4 1498 415 279 122 22 chr6 119761124 119761263 -29755774 + RSINE1 SINE B4 12 164 -1 5 1498 4108 101 101 38 chr6 119761607 119762318 -29754719 + RMER6A LTR ERVK 1 756 0 5 1498 4451 68 62 6 chr6 119762516 119763198 -29753839 + Lx3_Mus LINE L1 6013 6732 -277 5 1498 22 0 0 0 chr6 119763483 119763505 -29753532 + AT_rich Low_complexity Low_complexity 1 22 0 5 1498 881 245 19 19 chr6 119763505 119763713 -29753324 - B3 SINE B2 -6 210 3 5 1498 180 320 64 39 chr6 119763854 119763932 -29753105 + MIR SINE MIR 109 188 -74 5 1498 2481 212 115 36 chr6 119763944 119764718 -29752319 + Lx9 LINE L1 6804 7638 -6 5 1498 482 283 58 0 chr6 119764932 119765070 -29751967 + RSINE1 SINE B4 3 148 -17 5 1498 877 142 21 28 chr6 119766064 119766209 -29750828 - B1_Mur2 SINE Alu -5 144 1 5 1498 1260 27 0 0 chr6 119766284 119766431 -29750606 + B1_Mm SINE Alu 1 147 0 5 1498 365 302 79 128 chr6 119766463 119766767 -29750270 + B4A SINE B4 2 290 -2 5 1498 24 32 0 0 chr6 119767305 119767336 -29749701 + AT_rich Low_complexity Low_complexity 1 31 0 5 1498 935 189 97 20 chr6 119767933 119768128 -29748909 + B3 SINE B2 1 210 -6 5 1498 1006 74 139 12 chr6 119768156 119768321 -29748716 - ORR1A2 LTR MaLR 0 327 142 5 1498 2580 67 44 0 chr6 119768324 119768668 -29748369 + RLTR10C LTR ERVK 75 433 -3 5 1498 818 116 36 2 chr6 119768668 119768807 -29748230 - ORR1A2 LTR MaLR -202 192 9 5 1498 817 200 25 0 chr6 119768818 119768978 -29748059 + B3 SINE B2 2 165 -51 5 1498 338 0 24 0 chr6 119769349 119769391 -29747646 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 5 1498 559 176 50 42 chr6 119769403 119769522 -29747515 - PB1D9 SINE Alu 0 120 1 5 1498 201 74 0 0 chr6 119769855 119769882 -29747155 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 5 1498 263 174 70 80 chr6 119770439 119770546 -29746491 - B1_Mur4 SINE Alu -41 107 1 5 1498 340 316 0 0 chr6 119770735 119770811 -29746226 + ID2 SINE ID 3 78 -5 5 1498 396 283 84 19 chr6 119770870 119771025 -29746012 + RSINE1 SINE B4 1 165 0 5 1498 575 275 192 17 chr6 119771233 119771473 -29745564 - B4A SINE B4 -8 284 3 5 1498 773 228 6 34 chr6 119771566 119771743 -29745294 + B2_Mm2 SINE B2 2 173 -22 5 1498 205 260 0 0 chr6 119771919 119771969 -29745068 + (CATA)n Simple_repeat Simple_repeat 1 50 0 5 1498 875 143 14 7 chr6 119773168 119773316 -29743721 + B1_Mur3 SINE Alu 1 149 0 5 1498 868 146 0 37 chr6 119773351 119773486 -29743551 + B3 SINE B2 1 130 -86 5 1498 338 206 0 31 chr6 119773539 119773604 -29743433 - RMER15 LTR ERVL -145 430 368 5 1498 846 161 14 14 chr6 119773617 119773762 -29743275 - B1_Mur4 SINE Alu 0 150 6 5 1498 401 210 0 58 chr6 119773896 119773982 -29743055 - B1F SINE Alu -2 147 67 5 1498 978 160 0 0 chr6 119773990 119774140 -29742897 - B1_Mur4 SINE Alu 0 150 1 5 1498 23 0 0 0 chr6 119774177 119774200 -29742837 + AT_rich Low_complexity Low_complexity 1 23 0 5 1498 380 269 154 64 chr6 119775663 119775929 -29741108 + B4 SINE B4 3 292 0 5 1498 273 259 265 7 chr6 119775963 119776099 -29740938 + ID_B1 SINE B4 51 221 -3 5 1498 252 176 75 96 chr6 119776345 119776439 -29740598 + B3A SINE B2 107 198 0 5 1498 269 159 0 0 chr6 119776448 119776492 -29740545 - B3A SINE B2 -153 45 2 5 1498 226 344 61 0 chr6 119776506 119776637 -29740400 + MER46C DNA MER2_type 80 218 -120 5 1498 236 296 183 0 chr6 119776729 119776800 -29740237 + PB1D10 SINE Alu 13 96 -21 5 1498 342 304 76 48 chr6 119776836 119776981 -29740056 + B1F SINE Alu 1 149 0 5 1498 2987 248 112 30 chr6 119776986 119777929 -29739108 + Lx8 LINE L1 6332 7352 -121 5 1498 399 267 66 46 chr6 119777963 119778116 -29738921 - MER2 DNA MER2_type -53 292 133 5 1498 901 113 30 0 chr6 119778116 119778249 -29738788 + B1_Mus1 SINE Alu 3 139 -9 5 1498 189 0 0 0 chr6 119778249 119778270 -29738767 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1498 399 267 66 46 chr6 119778270 119778311 -29738726 - MER2 DNA MER2_type -213 132 94 5 1498 302 275 24 36 chr6 119779107 119779190 -29737847 - ID4 SINE ID 0 83 2 5 1498 370 225 148 62 chr6 119779198 119779326 -29737711 - ID_B1 SINE B4 0 224 86 5 1498 283 217 151 11 chr6 119779377 119779470 -29737567 + L1M5 LINE L1 5681 5786 -338 5 1498 245 240 100 55 chr6 119779616 119779726 -29737311 - RMER30 DNA MER1_type -1 201 87 5 1498 748 234 92 152 chr6 119779833 119780352 -29736685 + RLTR12B LTR ERVK 11 498 -30 5 1498 479 312 141 11 chr6 119780429 119780620 -29736417 - B4A SINE B4 -76 216 1 5 1498 407 301 48 8 chr6 119780713 119780837 -29736200 + RSINE1 SINE B4 4 132 -33 5 1498 1307 85 23 0 chr6 119780878 119781054 -29735983 + B2_Mm2 SINE B2 2 181 -14 5 1498 432 56 277 9 chr6 119781081 119781192 -29735845 + B2_Mm2 SINE B2 46 191 -4 5 1498 343 230 19 74 chr6 119781837 119781945 -29735092 + PB1 SINE Alu 24 125 -2 5 1498 479 219 19 9 chr6 119782137 119782243 -29734794 + B3 SINE B2 1 107 -109 5 1498 233 57 29 0 chr6 119782290 119782325 -29734712 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 1498 231 273 57 0 chr6 119782687 119782775 -29734262 + B1F2 SINE Alu 1 93 -56 5 1498 549 0 0 0 chr6 119782795 119782856 -29734181 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1498 630 60 0 0 chr6 119782856 119782938 -29734099 + (GGGA)n Simple_repeat Simple_repeat 4 86 0 5 1498 4814 174 33 56 chr6 119782990 119784107 -29732930 - RLTR21 LTR ERVK -469 1103 13 5 1498 325 250 38 0 chr6 119784115 119784195 -29732842 + PB1D10 SINE Alu 23 105 -12 5 1498 257 189 305 53 chr6 119784195 119784210 -29732827 + ID_B1 SINE B4 104 222 -2 5 1498 267 251 111 12 chr6 119784422 119784628 -29732409 + L1M3 LINE L1 4024 4267 -1879 5 1498 383 239 76 0 chr6 119784867 119784959 -29732078 + PB1D9 SINE Alu 2 100 -20 5 1498 274 301 14 121 chr6 119785000 119785140 -29731897 + PB1 SINE Alu 1 125 -2 5 1498 373 220 115 39 chr6 119785223 119785327 -29731710 + PB1D7 SINE Alu 9 120 0 5 1498 439 250 0 0 chr6 119785357 119785453 -29731584 + RSINE1 SINE B4 33 128 -37 5 1498 275 67 44 0 chr6 119785463 119785508 -29731529 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 5 1498 512 291 106 15 chr6 119785925 119786124 -29730913 - ID_B1 SINE B4 0 224 8 5 1498 725 159 59 29 chr6 119786210 119786346 -29730691 - B1_Mur2 SINE Alu 0 149 10 5 1498 778 183 14 21 chr6 119786388 119786533 -29730504 - B1_Mus2 SINE Alu 0 147 4 5 1498 292 212 0 0 chr6 119786723 119786792 -29730245 + B1F1 SINE Alu 2 70 -77 5 1498 703 283 177 21 chr6 119786886 119787388 -29729649 - L1M4 LINE L1 -521 5823 5254 5 1498 624 260 117 61 chr6 119787404 119787584 -29729453 + B3A SINE B2 6 195 0 5 1498 624 182 0 209 chr6 119787727 119787914 -29729123 - B1_Mur2 SINE Alu 0 149 2 5 1498 217 184 0 0 chr6 119788049 119788087 -29728950 - PB1D7 SINE Alu -63 57 20 5 1498 231 328 108 8 chr6 119788125 119788245 -29728792 + L1ME3B LINE L1 6009 6140 -100 5 1498 344 201 22 49 chr6 119788280 119788463 -29728574 + (TA)n Simple_repeat Simple_repeat 1 178 0 5 1498 590 241 62 7 chr6 119788481 119788627 -29728410 - B4 SINE B4 0 292 139 5 1498 210 253 128 75 chr6 119789036 119789130 -29727907 + PB1D10 SINE Alu 10 108 -9 5 1498 987 72 42 28 chr6 119789170 119789313 -29727724 + B1_Mus2 SINE Alu 3 147 0 5 1498 672 197 17 22 chr6 119789361 119789520 -29727517 + B1_Mus1 SINE Alu 15 142 -6 5 1498 530 261 22 22 chr6 119790070 119790207 -29726830 + B1F SINE Alu 2 138 -11 5 1498 351 0 0 0 chr6 119790207 119790246 -29726791 + (GAGAA)n Simple_repeat Simple_repeat 2 40 0 5 1498 527 0 16 0 chr6 119790246 119790308 -29726729 + (CAGAGA)n Simple_repeat Simple_repeat 2 65 0 5 1498 1414 99 16 0 chr6 119790339 119790531 -29726506 + B2_Mm2 SINE B2 1 195 0 5 1498 1090 290 108 23 chr6 119790560 119791076 -29725961 + MLT1F2 LTR MaLR 1 560 0 5 1498 240 300 0 48 chr6 119791253 119791337 -29725700 + ID_B1 SINE B4 79 158 -66 5 1498 211 274 39 110 chr6 119791256 119791383 -29725654 + PB1D7 SINE Alu 1 118 -2 5 1498 208 295 0 0 chr6 119791894 119791955 -29725082 + (TTCA)n Simple_repeat Simple_repeat 4 64 0 5 1498 240 375 109 4 chr6 119792030 119792268 -29724769 - L3 LINE CR1 -1083 3406 3144 5 1498 210 328 16 0 chr6 119792356 119792417 -29724620 + B1F SINE Alu 1 62 -87 5 1498 2367 203 20 24 chr6 119792430 119792977 -29724060 + RLTR31_Mur LTR ERVK 1 553 0 5 1498 270 56 0 0 chr6 119793003 119793039 -29723998 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1498 720 224 56 20 chr6 119793041 119793237 -29723800 + B3 SINE B2 1 203 -13 5 1498 206 275 0 28 chr6 119793285 119793356 -29723681 + GA-rich Low_complexity Low_complexity 4 72 0 5 1498 265 210 98 12 chr6 119793840 119793922 -29723115 + L2a LINE L2 2229 2317 -1102 5 1498 286 22 43 21 chr6 119794023 119794070 -29722967 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 1498 193 264 128 28 chr6 119794091 119794200 -29722837 + L2a LINE L2 2586 2705 -714 5 1498 1200 102 68 0 chr6 119794235 119794412 -29722625 - B2_Mm2 SINE B2 -6 189 1 5 1498 264 265 44 0 chr6 119794426 119794494 -29722543 + L2a LINE L2 3333 3403 -23 5 1498 22 35 0 0 chr6 119794508 119794537 -29722500 + AT_rich Low_complexity Low_complexity 1 29 0 5 1498 557 276 39 0 chr6 119794542 119794698 -29722339 - RSINE1 SINE B4 0 165 4 5 1498 523 309 32 32 chr6 119794892 119795079 -29721958 + B3A SINE B2 2 188 -10 5 1498 814 169 22 0 chr6 119795115 119795251 -29721786 + B1_Mus2 SINE Alu 2 140 -7 6 1498 532 187 93 0 chr6 119795714 119795821 -29721216 - B1F SINE Alu -29 120 4 6 1498 609 172 161 15 chr6 119796560 119796690 -29720347 + B1_Mur3 SINE Alu 1 149 0 6 1498 305 287 67 34 chr6 119796827 119796946 -29720091 + RSINE1 SINE B4 3 125 -40 6 1498 180 152 0 0 chr6 119798062 119798095 -29718942 + (CTG)n Simple_repeat Simple_repeat 2 34 0 6 1498 207 167 0 0 chr6 119798108 119798150 -29718887 + (CCG)n Simple_repeat Simple_repeat 2 43 0 6 1498 201 315 16 16 chr6 119798175 119798304 -29718733 + (CCCCG)n Simple_repeat Simple_repeat 4 132 0 6 1498 198 0 0 0 chr6 119799032 119799054 -29717983 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1498 884 249 126 8 chr6 119799514 119799769 -29717268 + B4A SINE B4 1 285 -7 6 187 495 0 0 0 chr6 119799769 119799824 -29717213 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1499 661 259 67 0 chr6 119800089 119800282 -29716755 + MLT-int LTR MaLR 1399 1604 -131 6 1499 943 163 0 7 chr6 119800492 119800640 -29716397 - B1_Mus1 SINE Alu -1 147 1 6 1499 1131 72 0 0 chr6 119800773 119800912 -29716125 + B1_Mus1 SINE Alu 1 139 -9 6 1499 180 0 0 0 chr6 119800926 119800946 -29716091 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1499 300 278 49 49 chr6 119801013 119801115 -29715922 - PB1 SINE Alu -21 106 5 6 1499 371 235 67 0 chr6 119801540 119801659 -29715378 + L1M LINE L1 5282 5408 -766 6 1499 234 224 0 0 chr6 119801659 119801708 -29715329 + B1_Mus2 SINE Alu 88 136 -11 6 1499 415 256 22 0 chr6 119801703 119801793 -29715244 + PB1D7 SINE Alu 29 120 0 6 1499 2166 118 95 170 chr6 119801814 119802079 -29714958 - RLTR24 LTR ERV1 0 529 261 6 1499 1468 58 0 0 chr6 119802079 119802253 -29714784 - B2_Mm1a SINE B2 -19 174 1 6 1499 2166 118 95 170 chr6 119802253 119802557 -29714480 - RLTR24 LTR ERV1 -269 260 3 6 1499 207 0 0 0 chr6 119802844 119802867 -29714170 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1499 272 267 105 0 chr6 119802906 119802992 -29714045 + PB1D10 SINE Alu 23 117 0 6 1499 400 174 22 0 chr6 119802992 119803084 -29713953 + GA-rich Low_complexity Low_complexity 3 96 0 6 1499 1313 94 0 22 chr6 119803144 119803329 -29713708 + B2_Mm2 SINE B2 3 183 -12 6 1499 633 187 22 88 chr6 119803330 119803512 -29713525 + RMER10B LTR ERVL 172 341 -57 6 1499 24 0 0 0 chr6 119803515 119803539 -29713498 + AT_rich Low_complexity Low_complexity 1 24 0 6 1499 33 0 0 0 chr6 119803690 119803723 -29713314 + AT_rich Low_complexity Low_complexity 1 33 0 6 1499 307 259 150 44 chr6 119803852 119803965 -29713072 + PB1 SINE Alu 1 125 -2 6 1499 576 0 0 0 chr6 119804039 119804103 -29712934 + (TC)n Simple_repeat Simple_repeat 2 65 0 6 1499 459 0 0 0 chr6 119804103 119804153 -29712884 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1499 230 292 13 65 chr6 119804242 119804319 -29712718 + ID4_ SINE ID 2 74 -9 6 1499 323 284 101 60 chr6 119804312 119804462 -29712575 - MLT1C LTR MaLR -120 347 189 6 1499 298 264 168 9 chr6 119804462 119804569 -29712468 - PB1 SINE Alu -3 124 1 6 1499 323 284 101 60 chr6 119804569 119804635 -29712402 - MLT1C LTR MaLR -279 188 122 6 1499 444 111 0 0 chr6 119804650 119804731 -29712306 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1499 871 226 39 0 chr6 119804858 119805039 -29711998 + B3 SINE B2 2 189 -27 6 1499 429 237 56 122 chr6 119805116 119805160 -29711877 - B2_Mm2 SINE B2 -11 184 141 6 1499 228 35 0 0 chr6 119805160 119805189 -29711848 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 6 1499 652 228 57 9 chr6 119805189 119805341 -29711696 - B3 SINE B2 -67 149 1 6 1499 189 0 0 0 chr6 119805352 119805373 -29711664 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 6 1499 180 200 0 0 chr6 119806454 119806494 -29710543 + T-rich Low_complexity Low_complexity 1 40 0 6 1499 295 217 32 32 chr6 119806605 119806729 -29710308 + T-rich Low_complexity Low_complexity 1 124 0 6 1499 432 140 74 74 chr6 119806862 119806970 -29710067 - PB1D9 SINE Alu -8 112 5 6 1499 22 35 0 0 chr6 119807052 119807081 -29709956 + AT_rich Low_complexity Low_complexity 1 29 0 6 1499 557 291 34 0 chr6 119807973 119808121 -29708916 + RSINE1 SINE B4 1 153 -12 6 1499 610 237 56 21 chr6 119808189 119808331 -29708706 - B1_Mur3 SINE Alu 0 149 3 6 1499 405 0 0 0 chr6 119808331 119808376 -29708661 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 6 1499 863 267 10 14 chr6 119808377 119808586 -29708451 + B3 SINE B2 9 216 0 6 1499 1676 217 29 89 chr6 119808945 119808969 -29708068 + RLTR20A2 LTR ERVK 1 24 -554 6 1499 2445 124 29 145 chr6 119808969 119809514 -29707523 - RLTR45 LTR ERVK 0 482 1 6 1499 1676 217 29 89 chr6 119809514 119809967 -29707070 + RLTR20A2 LTR ERVK 25 449 -129 6 1499 848 89 178 0 chr6 119809967 119810113 -29706924 + B2_Mm2 SINE B2 2 173 -22 6 1499 385 52 319 9 chr6 119810149 119810262 -29706775 + B2_Mm2 SINE B2 47 194 -1 6 1499 598 225 6 44 chr6 119810261 119810419 -29706618 + RLTR20A1 LTR ERVK 400 551 0 6 1499 617 47 12 0 chr6 119810920 119811005 -29706032 + (GA)n Simple_repeat Simple_repeat 2 87 0 6 1499 583 155 146 8 chr6 119811005 119811135 -29705902 + B1_Mur4 SINE Alu 3 150 0 6 1499 393 202 225 0 chr6 119811327 119811416 -29705621 + B3 SINE B2 2 110 -106 6 1499 707 193 27 41 chr6 119811438 119811528 -29705509 - B3A SINE B2 -49 149 60 6 1499 2342 122 63 58 chr6 119811528 119811955 -29705082 + RLTR23 LTR ERV1 1 429 -1 6 1499 707 193 27 41 chr6 119811955 119812010 -29705027 - B3A SINE B2 -139 59 6 6 1499 1291 214 143 12 chr6 119812056 119812109 -29704928 - MTD LTR MaLR -20 399 329 6 1499 513 0 0 0 chr6 119812109 119812166 -29704871 + (CATA)n Simple_repeat Simple_repeat 4 60 0 6 1499 1291 214 143 12 chr6 119812166 119812447 -29704590 - MTD LTR MaLR -91 328 21 6 1499 192 40 0 0 chr6 119812447 119812472 -29704565 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1499 560 236 8 0 chr6 119812739 119812862 -29704175 - ID_B1 SINE B4 -9 215 92 6 1499 1116 251 100 9 chr6 119812934 119813264 -29703773 - ORR1D2 LTR MaLR 0 370 11 6 1499 547 275 14 14 chr6 119813337 119813481 -29703556 - B1F1 SINE Alu -5 144 1 6 1499 343 261 21 11 chr6 119813682 119813775 -29703262 - B3 SINE B2 -14 202 109 6 1499 266 189 0 0 chr6 119813760 119813813 -29703224 - B2_Mm2 SINE B2 -137 58 6 6 1499 341 239 18 0 chr6 119813917 119814065 -29702972 - ID_B1 SINE B4 -5 219 25 6 1499 358 213 80 0 chr6 119814106 119814181 -29702856 - ID4 SINE ID 0 83 3 6 1499 503 157 0 0 chr6 119814213 119814296 -29702741 + B3 SINE B2 1 83 -133 6 1499 555 314 150 20 chr6 119814739 119815032 -29702005 + MLT1G1 LTR MaLR 185 515 -64 6 1499 180 0 0 0 chr6 119815109 119815129 -29701908 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1499 1198 69 0 0 chr6 119815129 119815274 -29701763 - B1_Mus1 SINE Alu -3 145 1 6 1499 26 64 0 0 chr6 119815280 119815327 -29701710 + AT_rich Low_complexity Low_complexity 1 47 0 6 1499 551 282 69 17 chr6 119815329 119815502 -29701535 - B3A SINE B2 -16 182 1 6 1499 940 269 27 53 chr6 119815537 119815836 -29701201 + B4 SINE B4 2 292 0 6 1499 658 264 80 6 chr6 119815992 119816024 -29701013 - B3A SINE B2 -10 188 157 6 1499 396 0 0 0 chr6 119816024 119816068 -29700969 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1499 658 264 80 6 chr6 119816068 119816210 -29700827 - B3A SINE B2 -42 156 2 6 1499 415 298 35 9 chr6 119816214 119816329 -29700708 - B1_Mur1 SINE Alu -8 141 24 6 1499 2691 140 47 15 chr6 119816339 119816809 -29700228 + Lx2 LINE L1 4448 4932 -945 6 1499 388 125 316 18 chr6 119816820 119816934 -29700103 - B2_Mm2 SINE B2 -1 194 47 6 1499 1120 112 12 0 chr6 119817023 119817192 -29699845 - B2_Mm1t SINE B2 -22 171 1 6 1499 7803 106 13 2 chr6 119817193 119818864 -29698173 + Lx2 LINE L1 4926 6617 -380 6 1499 426 239 73 0 chr6 119819067 119819176 -29697861 + PB1D7 SINE Alu 4 120 0 6 1499 218 309 18 0 chr6 119819201 119819256 -29697781 + B1_Mm SINE Alu 5 60 -87 6 1499 505 88 27 0 chr6 119819256 119819335 -29697702 + Lx2 LINE L1 5949 6046 -536 6 1499 210 322 0 0 chr6 119819348 119819407 -29697630 + B1_Mur2 SINE Alu 86 144 -5 6 1499 234 263 0 116 chr6 119819641 119819656 -29697381 + MT2B LTR ERVL 152 153 -448 6 1499 542 200 0 0 chr6 119819656 119819756 -29697281 + PB1D7 SINE Alu 1 100 -20 6 1499 270 185 46 0 chr6 119819825 119819890 -29697147 + ID_B1 SINE B4 150 217 -7 6 1499 710 211 13 13 chr6 119820516 119820665 -29696372 + B1_Mur4 SINE Alu 2 150 0 6 1499 251 150 17 0 chr6 119820911 119820971 -29696066 + CT-rich Low_complexity Low_complexity 1 61 0 6 1499 996 246 75 64 chr6 119821052 119821459 -29695578 + MTC LTR MaLR 11 407 -14 6 1499 423 246 33 0 chr6 119821461 119821583 -29695454 + L1_Mur3 LINE L1 2242 2367 -3513 6 1499 515 185 57 32 chr6 119821620 119821743 -29695294 - B1_Mur1 SINE Alu -18 131 6 6 1499 270 250 114 24 chr6 119821636 119821759 -29695278 - B4 SINE B4 -89 203 70 6 1499 826 267 111 96 chr6 119821762 119822305 -29694732 + L1_Mur3 LINE L1 2377 2927 -2953 6 1499 621 259 18 37 chr6 119822505 119822669 -29694368 + RSINE1 SINE B4 3 163 -2 6 1499 213 39 0 0 chr6 119822688 119822714 -29694323 + (TAA)n Simple_repeat Simple_repeat 2 27 0 6 1499 2574 68 9 0 chr6 119822728 119823064 -29693973 - L1Md_F2 LINE L1 -12 6570 6232 6 1499 2354 98 164 2 chr6 119823064 119823473 -29693564 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1499 6714 52 5 13 chr6 119823473 119824311 -29692726 - IAPEz-int LTR ERVK 0 6481 5651 6 1499 2565 75 27 3 chr6 119824304 119824638 -29692399 - IAPEz-int LTR ERVK -4781 1700 1359 6 1499 3619 63 4 16 chr6 119824638 119825216 -29691821 - IAPEz-int LTR ERVK -5819 662 168 6 1499 226 327 0 0 chr6 119825216 119825271 -29691766 - RLTR27 LTR ERVK -34 275 221 6 1499 1101 130 0 93 chr6 119825271 119825475 -29691562 - IAPEz-int LTR ERVK -6288 193 9 6 1499 2328 98 164 2 chr6 119825476 119825885 -29691152 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1499 4509 57 2 0 chr6 119825885 119826432 -29690605 - L1Md_F2 LINE L1 -345 6237 5690 6 1499 533 256 146 34 chr6 119826463 119826641 -29690396 + B3A SINE B2 1 198 0 6 1499 281 218 0 0 chr6 119826706 119826761 -29690276 + L1_Mur3 LINE L1 5398 5452 -428 6 1499 1188 51 69 185 chr6 119826764 119826980 -29690057 + B2_Mm1a SINE B2 1 191 -2 7 1499 1115 76 0 12 chr6 119827003 119827163 -29689874 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 7 1499 353 239 52 42 chr6 119827165 119827261 -29689776 + B3 SINE B2 1 97 -119 7 1499 646 248 137 23 chr6 119827282 119827538 -29689499 + L1_Rod LINE L1 5552 5836 -11 7 1499 536 211 15 54 chr6 119827539 119827669 -29689368 + MTEa LTR MaLR 255 379 0 7 1499 267 309 78 16 chr6 119827677 119827805 -29689232 + L1M5 LINE L1 5616 5751 -443 7 1499 23 33 0 0 chr6 119827847 119827877 -29689160 + AT_rich Low_complexity Low_complexity 1 30 0 7 1499 230 337 0 11 chr6 119827882 119827969 -29689068 - MLT1B LTR MaLR -21 369 284 7 1499 761 214 0 14 chr6 119828071 119828213 -29688824 + B1_Mur2 SINE Alu 2 141 -8 7 1499 192 152 0 0 chr6 119828238 119828271 -29688766 + (CAA)n Simple_repeat Simple_repeat 1 33 0 7 1499 8945 100 55 30 chr6 119828421 119828545 -29688492 - L1_Mur1 LINE L1 -2265 3621 3481 7 1499 228 67 0 0 chr6 119828545 119828575 -29688462 + (TTG)n Simple_repeat Simple_repeat 1 30 0 7 1499 8945 100 55 30 chr6 119828575 119828729 -29688308 - L1_Mur1 LINE L1 -2406 3480 3320 7 1499 1152 76 7 0 chr6 119828729 119828874 -29688163 - B1_Mus2 SINE Alu 0 147 2 7 1499 8945 100 55 30 chr6 119828874 119830028 -29687009 - L1_Mur1 LINE L1 -2567 3319 2153 7 1499 1314 78 38 24 chr6 119830025 119830236 -29686801 - L1_Mur1 LINE L1 -1855 4031 3818 7 1499 1377 265 112 29 chr6 119830231 119830691 -29686346 + Lx9 LINE L1 7008 7509 -135 7 1499 357 24 0 0 chr6 119830691 119830733 -29686304 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1499 318 50 0 0 chr6 119830733 119830772 -29686265 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 1499 1377 265 112 29 chr6 119830772 119830897 -29686140 + Lx9 LINE L1 7510 7642 -2 7 1499 303 272 84 48 chr6 119830933 119831099 -29685938 + Lx8 LINE L1 7300 7471 -2 7 1499 607 206 193 6 chr6 119831131 119831307 -29685730 + B3 SINE B2 2 210 -6 7 1499 274 218 18 0 chr6 119831401 119831471 -29685566 + L1ME1 LINE L1 5298 5376 -921 7 1499 444 273 51 99 chr6 119831445 119831520 -29685517 + L1ME1 LINE L1 5893 5953 -226 7 1499 1457 76 5 0 chr6 119831520 119831704 -29685333 + B2_Mm1t SINE B2 2 186 -7 7 1499 444 273 51 99 chr6 119831704 119831921 -29685116 + L1ME1 LINE L1 5954 6171 -8 7 1499 248 308 92 18 chr6 119831990 119832099 -29684938 + L1ME5 LINE L1 6072 6188 -6 7 1499 298 191 0 31 chr6 119832335 119832400 -29684637 - tRNA-Ala-GCY_ tRNA tRNA -11 64 2 7 1499 431 253 11 0 chr6 119832705 119832792 -29684245 - PB1D10 SINE Alu -20 97 10 7 1499 315 336 19 0 chr6 119832792 119832804 -29684233 - ID_B1 SINE B4 -41 178 78 7 1499 825 178 14 0 chr6 119832938 119833071 -29683966 + B1_Mus1 SINE Alu 1 135 -13 7 1499 269 26 26 0 chr6 119833071 119833109 -29683928 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 7 1499 825 178 14 0 chr6 119833109 119833121 -29683916 + B1_Mus1 SINE Alu 136 147 -1 7 1499 261 0 0 0 chr6 119833180 119833209 -29683828 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1499 189 0 0 0 chr6 119833676 119833697 -29683340 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1499 196 321 62 9 chr6 119833785 119833898 -29683139 - MIRc SINE MIR -5 263 145 7 1499 485 32 16 0 chr6 119834007 119834070 -29682967 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 7 1499 898 168 0 0 chr6 119834072 119834209 -29682828 - B1_Mur4 SINE Alu -13 137 1 7 1499 319 239 0 3 chr6 119834209 119834289 -29682748 - ID_B1 SINE B4 -68 156 82 7 1499 418 192 0 0 chr6 119834325 119834398 -29682639 + ID4 SINE ID 1 73 -10 7 1499 702 35 0 0 chr6 119834406 119834491 -29682546 + (GGGA)n Simple_repeat Simple_repeat 4 88 0 7 1499 947 196 85 0 chr6 119835526 119835725 -29681312 - MTD LTR MaLR -194 225 10 7 1499 205 256 0 0 chr6 119836112 119836155 -29680882 + CT-rich Low_complexity Low_complexity 3 45 0 7 1499 435 250 97 0 chr6 119836660 119836784 -29680253 - RSINE1 SINE B4 -28 137 2 7 1499 2152 157 77 75 chr6 119837156 119837674 -29679363 - RLTR24 LTR ERV1 0 529 11 7 1499 1524 227 49 27 chr6 119837754 119838161 -29678876 + MTD LTR MaLR 1 416 -3 7 1499 1009 278 105 18 chr6 119838583 119838832 -29678205 - MT2A LTR ERVL -19 514 233 7 1499 252 122 0 0 chr6 119838832 119838873 -29678164 + (CAG)n Simple_repeat Simple_repeat 1 41 0 7 1499 1009 278 105 18 chr6 119838873 119839080 -29677957 - MT2A LTR ERVL -301 232 18 7 1499 1896 182 44 15 chr6 119839084 119839474 -29677563 - MTC LTR MaLR -20 401 1 7 1499 5038 173 50 106 chr6 119839474 119839670 -29677367 - MTC-int LTR MaLR 0 1258 1073 7 1499 1406 68 26 5 chr6 119839670 119839861 -29677176 + B2_Mm2 SINE B2 1 195 0 7 1499 5038 173 50 106 chr6 119839861 119840599 -29676438 - MTC-int LTR MaLR -186 1072 388 7 1499 1070 71 50 0 chr6 119840599 119840739 -29676298 - B1_Mus1 SINE Alu -1 147 1 7 1499 5038 173 50 106 chr6 119840739 119841136 -29675901 - MTC-int LTR MaLR -871 387 1 7 1499 1794 205 7 72 chr6 119841136 119841582 -29675455 - MTC LTR MaLR 0 421 5 7 1499 539 265 66 7 chr6 119842027 119842179 -29674858 + RSINE1 SINE B4 3 163 -2 7 1499 989 260 23 88 chr6 119842248 119842323 -29674714 - B4A SINE B4 -4 288 225 7 1499 207 0 0 0 chr6 119842323 119842346 -29674691 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7 1499 1182 49 0 0 chr6 119842347 119842489 -29674548 - B1_Mm SINE Alu -3 144 3 7 1499 989 260 23 88 chr6 119842489 119842719 -29674318 - B4A SINE B4 -68 224 1 7 1499 918 174 0 0 chr6 119844731 119844903 -29672134 + CT-rich Low_complexity Low_complexity 3 174 0 7 1499 825 63 53 38 chr6 119844904 119845036 -29672001 - B1_Mus1 SINE Alu -6 142 9 7 1499 1087 90 0 12 chr6 119845610 119845778 -29671259 + (TTC)n Simple_repeat Simple_repeat 3 168 0 7 1499 513 0 0 0 chr6 119845778 119845835 -29671202 + (TC)n Simple_repeat Simple_repeat 1 57 0 7 1499 1094 71 0 7 chr6 119845835 119845977 -29671060 - B1_Mus2 SINE Alu -5 142 2 7 1499 22 0 0 0 chr6 119846317 119846339 -29670698 + AT_rich Low_complexity Low_complexity 1 22 0 7 1499 229 288 0 26 chr6 119846528 119846605 -29670432 + ID2 SINE ID 4 78 -5 7 1499 466 264 27 40 chr6 119846921 119847071 -29669966 + B1F SINE Alu 2 149 0 7 1499 453 225 200 30 chr6 119847074 119847201 -29669836 + B3A SINE B2 1 159 -39 7 1499 225 0 0 0 chr6 119847201 119847226 -29669811 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1499 453 225 200 30 chr6 119847226 119847263 -29669774 + B3A SINE B2 160 193 -5 7 1499 360 253 71 0 chr6 119847488 119847611 -29669426 - B1F2 SINE Alu -7 142 2 7 1499 547 235 0 0 chr6 119847661 119847776 -29669261 - ID_B1 SINE B4 -21 203 89 7 1499 569 294 20 0 chr6 119847785 119847931 -29669106 - B1F SINE Alu 0 149 1 7 1499 477 262 56 7 chr6 119848380 119848522 -29668515 + L1M3 LINE L1 4814 4962 -1178 7 1499 265 305 58 17 chr6 119848545 119848665 -29668372 + B1F SINE Alu 25 149 0 7 1499 203 0 0 36 chr6 119848767 119848795 -29668242 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 1499 362 204 69 88 chr6 119848815 119848917 -29668120 + PB1D7 SINE Alu 1 100 -20 7 1499 1122 56 21 0 chr6 119849061 119849203 -29667834 + B1_Mus1 SINE Alu 3 147 -1 7 1499 234 0 0 0 chr6 119849205 119849231 -29667806 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1499 576 182 127 0 chr6 119849430 119849556 -29667481 + B1_Mur4 SINE Alu 2 143 -7 7 1499 1026 78 0 0 chr6 119849558 119849699 -29667338 + (TAGA)n Simple_repeat Simple_repeat 3 143 0 7 1499 460 252 140 7 chr6 119849774 119849910 -29667127 + RSINE1 SINE B4 2 155 -10 7 1499 513 0 0 0 chr6 119850033 119850090 -29666947 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1499 311 264 133 21 chr6 119850090 119850233 -29666804 + RSINE1 SINE B4 2 160 -5 7 1499 581 262 81 38 chr6 119850267 119850477 -29666560 + ID_B1 SINE B4 2 220 -4 7 1499 970 180 68 5 chr6 119850764 119850954 -29666083 - B3 SINE B2 -13 203 2 7 1499 540 218 102 24 chr6 119850965 119851092 -29665945 - B1_Mus2 SINE Alu 0 147 11 7 1499 222 302 120 120 chr6 119850967 119851125 -29665912 - B4 SINE B4 -69 223 66 7 1499 694 213 38 49 chr6 119851456 119851639 -29665398 - B3A SINE B2 -15 183 3 7 1499 240 318 0 0 chr6 119851670 119851736 -29665301 - ID4 SINE ID -16 67 2 7 1499 337 229 70 40 chr6 119851736 119851836 -29665201 - PB1D10 SINE Alu -5 112 10 7 1499 502 159 83 18 chr6 119851889 119851998 -29665039 - PB1D9 SINE Alu 0 120 5 7 1499 333 314 12 30 chr6 119853207 119853371 -29663666 - L1MB7 LINE L1 -44 6140 5980 7 1499 1014 251 123 14 chr6 119853540 119853907 -29663130 + Lx9 LINE L1 7221 7627 -17 7 1499 655 201 156 18 chr6 119853908 119854075 -29662962 + B3 SINE B2 25 214 -2 7 1499 360 42 0 0 chr6 119854079 119854097 -29662940 + (T)n Simple_repeat Simple_repeat 1 18 0 7 1499 1155 88 0 0 chr6 119854097 119854245 -29662792 - B1_Mus1 SINE Alu 0 148 1 7 1499 360 42 0 0 chr6 119854245 119854274 -29662763 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1499 567 202 123 0 chr6 119854311 119854425 -29662612 + B3 SINE B2 3 130 -86 7 1499 873 160 0 0 chr6 119854477 119854608 -29662429 + B1_Mur3 SINE Alu 1 131 -18 7 1499 487 289 59 1 chr6 119854623 119854855 -29662182 - L1_Mur3 LINE L1 -1705 4438 4146 7 1499 403 180 21 63 chr6 119854985 119855080 -29661957 - PB1D9 SINE Alu -29 91 1 7 1499 3113 131 14 78 chr6 119855536 119856101 -29660936 - RLTR24 LTR ERV1 0 529 1 7 1499 491 205 110 8 chr6 119856224 119856342 -29660695 - RSINE1 SINE B4 -33 132 3 7 1499 510 17 0 0 chr6 119856647 119856706 -29660331 + (TTCC)n Simple_repeat Simple_repeat 1 59 0 7 1499 860 238 22 0 chr6 119856869 119857050 -29659987 - ID_B1 SINE B4 -5 219 35 7 1499 255 318 110 18 chr6 119857253 119857362 -29659675 - LTR16C LTR ERVL -292 197 79 7 1499 267 280 13 0 chr6 119857376 119857451 -29659586 - LTR16C LTR ERVL -380 109 34 7 1499 762 210 113 6 chr6 119858170 119858347 -29658690 - B3 SINE B2 0 216 21 7 1499 417 123 0 0 chr6 119858349 119858414 -29658623 + (TTTTC)n Simple_repeat Simple_repeat 2 66 0 7 1499 21 36 0 0 chr6 119858423 119858451 -29658586 + AT_rich Low_complexity Low_complexity 1 28 0 7 1499 628 233 10 71 chr6 119858539 119858739 -29658298 - MTE2a LTR MaLR -43 376 152 7 1499 1681 36 0 0 chr6 119858739 119858931 -29658106 + B2_Mm1a SINE B2 2 193 0 8 1499 538 289 62 113 chr6 119858931 119859121 -29657916 - MTE2a LTR MaLR -240 179 7 7 1499 319 297 116 0 chr6 119859229 119859367 -29657670 + MER58B DNA MER1_type 163 316 -25 8 1499 1009 52 8 0 chr6 119859421 119859555 -29657482 + B2_Mm2 SINE B2 16 150 -45 8 1499 441 36 0 0 chr6 119859555 119859610 -29657427 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1499 329 206 116 32 chr6 119859659 119859754 -29657283 - ID_B1 SINE B4 -9 215 113 8 1499 243 269 84 12 chr6 119859903 119860000 -29657037 - MER5A1 DNA MER1_type -45 121 18 8 1499 630 255 0 0 chr6 119860311 119860452 -29656585 + B1_Mur1 SINE Alu 5 145 -4 8 1499 189 0 0 0 chr6 119860600 119860621 -29656416 + (TA)n Simple_repeat Simple_repeat 2 22 0 8 1499 298 148 52 17 chr6 119860751 119860815 -29656222 - B1_Mur4 SINE Alu -83 67 1 8 1499 513 258 30 54 chr6 119861297 119861465 -29655572 + RSINE1 SINE B4 2 165 0 8 1499 699 209 0 7 chr6 119861566 119861701 -29655336 - B3A SINE B2 -63 135 2 8 1499 743 182 114 0 chr6 119861751 119861883 -29655154 - B1_Mm SINE Alu 0 147 1 8 1499 227 272 62 0 chr6 119862109 119862190 -29654847 - Lx7 LINE L1 -361 7335 7250 8 1499 1160 262 74 50 chr6 119862233 119862763 -29654274 - Lx7 LINE L1 -243 7230 6655 8 1499 750 152 30 0 chr6 119863381 119863513 -29653524 - B1_Mur4 SINE Alu 0 150 15 8 1499 508 254 7 21 chr6 119863387 119863528 -29653509 - ID_B1 SINE B4 -6 218 80 8 1499 203 55 0 53 chr6 119863783 119863821 -29653216 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 8 1499 564 173 21 76 chr6 119864470 119864614 -29652423 + URR1B DNA MER1_type 84 219 -6 8 1499 410 291 61 6 chr6 119866621 119866801 -29650236 - L1M3 LINE L1 -437 5734 5545 8 1499 378 0 0 0 chr6 119866857 119866899 -29650138 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 8 1499 576 42 0 0 chr6 119866899 119866970 -29650067 + (TTTC)n Simple_repeat Simple_repeat 4 74 0 8 1499 395 299 159 41 chr6 119866973 119867145 -29649892 - L1M3 LINE L1 -806 5334 5106 8 1499 568 197 66 99 chr6 119867145 119867297 -29649740 - B1_Mus2 SINE Alu 0 147 1 8 1499 395 299 159 41 chr6 119867297 119867515 -29649522 - L1M3 LINE L1 -1035 5105 4899 8 1499 426 210 0 0 chr6 119867532 119867613 -29649424 - PB1D9 SINE Alu -29 91 11 8 1499 1203 103 54 0 chr6 119867790 119867824 -29649213 - B2_Mm2 SINE B2 0 195 162 8 1499 675 0 0 0 chr6 119867824 119867899 -29649138 + (TA)n Simple_repeat Simple_repeat 2 76 0 8 1499 1203 103 54 0 chr6 119867899 119868048 -29648989 - B2_Mm2 SINE B2 -34 161 3 8 1499 253 246 33 0 chr6 119868082 119868143 -29648894 + CT-rich Low_complexity Low_complexity 2 64 0 8 1499 490 126 81 40 chr6 119869244 119869343 -29647694 + PB1D7 SINE Alu 12 114 -6 8 1499 316 231 12 25 chr6 119869907 119869987 -29647050 + ID_B1 SINE B4 133 211 -13 8 1499 293 164 57 43 chr6 119870287 119870357 -29646680 - ID4 SINE ID -10 73 3 8 1499 368 336 60 0 chr6 119870412 119870546 -29646491 - RSINE1 SINE B4 -19 146 5 8 1499 659 264 51 47 chr6 119871129 119871344 -29645693 + B3 SINE B2 1 216 0 8 1499 230 266 0 72 chr6 119871517 119871586 -29645451 + ID4_ SINE ID 2 65 -18 8 1499 261 83 0 0 chr6 119871625 119871661 -29645376 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1499 1123 0 0 0 chr6 119871711 119871844 -29645193 + L1Md_A LINE L1 6450 6582 0 8 1499 351 207 72 12 chr6 119871971 119872054 -29644983 - RMER30 DNA MER1_type -110 92 5 8 1499 962 183 137 9 chr6 119872189 119872415 -29644622 - Lx5 LINE L1 -54 6996 6742 8 1499 471 200 191 8 chr6 119873020 119873146 -29643891 - B1_Mur3 SINE Alu 0 149 1 8 1499 264 28 0 0 chr6 119873422 119873458 -29643579 + B1_Mus2 SINE Alu 112 147 0 8 1499 245 143 0 0 chr6 119873484 119873526 -29643511 - B2_Mm2 SINE B2 -113 82 41 8 1499 222 37 0 0 chr6 119875331 119875358 -29641679 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1499 458 46 0 15 chr6 119880333 119880399 -29636638 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 1499 963 216 70 0 chr6 119881598 119881797 -29635240 - B3 SINE B2 0 216 4 8 1499 591 364 58 7 chr6 119881831 119882105 -29634932 - B4 SINE B4 -4 288 1 8 1499 346 296 30 10 chr6 119882404 119882503 -29634534 - PB1D10 SINE Alu -8 109 9 8 1499 226 157 18 73 chr6 119883170 119883225 -29633812 - ID_B1 SINE B4 0 224 173 8 1499 853 174 111 0 chr6 119883271 119883443 -29633594 - B3 SINE B2 -8 208 18 8 1499 243 0 0 0 chr6 119883717 119883744 -29633293 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1499 318 297 19 99 chr6 119883894 119884055 -29632982 + B1F SINE Alu 1 148 -1 8 1499 744 273 0 27 chr6 119884534 119884722 -29632315 + ID_B1 SINE B4 40 222 -2 8 1499 1266 112 27 0 chr6 119885125 119885313 -29631724 + B2_Mm1t SINE B2 1 193 0 8 1499 993 157 202 0 chr6 119885804 119885982 -29631055 + B3 SINE B2 1 214 -2 8 1499 859 223 54 5 chr6 119886931 119887134 -29629903 + B3 SINE B2 4 216 0 8 1499 21 0 0 0 chr6 119887154 119887175 -29629862 + AT_rich Low_complexity Low_complexity 1 21 0 8 1499 711 183 0 0 chr6 119888089 119888209 -29628828 + B1F2 SINE Alu 23 142 -7 8 1499 617 281 6 40 chr6 119888325 119888499 -29628538 + ID_B1 SINE B4 4 171 -53 8 1499 272 286 105 53 chr6 119889458 119889591 -29627446 - B1F1 SINE Alu -8 141 2 8 1499 480 326 26 0 chr6 119889928 119890121 -29626916 - B3A SINE B2 0 198 1 8 1499 1389 81 5 5 chr6 119890151 119890349 -29626688 - L1_Mus1 LINE L1 -1 6566 6369 8 1499 3062 50 0 8 chr6 119890349 119890761 -29626276 + L1_Mus1 LINE L1 5553 5961 -606 8 1499 397 299 108 27 chr6 119890791 119890939 -29626098 - RSINE1 SINE B4 0 165 6 8 1499 549 303 6 44 chr6 119891002 119891161 -29625876 - RSINE1 SINE B4 0 165 13 8 1499 621 207 58 0 chr6 119891325 119891446 -29625591 + B1_Mm SINE Alu 13 140 -7 8 1499 22 0 0 0 chr6 119891479 119891501 -29625536 + AT_rich Low_complexity Low_complexity 1 22 0 8 1499 1236 114 11 0 chr6 119891614 119891798 -29625239 - B2_Mm1t SINE B2 -7 186 1 8 1499 405 244 145 36 chr6 119891798 119891964 -29625073 + MER58A DNA MER1_type 30 213 -11 8 1499 515 286 38 0 chr6 119891975 119892108 -29624929 + ID_B1 SINE B4 87 224 0 8 1499 1048 78 28 0 chr6 119892274 119892415 -29624622 + B1_Mus1 SINE Alu 2 146 -2 8 1499 1115 82 0 7 chr6 119892477 119892625 -29624412 - B1_Mus1 SINE Alu 0 148 2 8 1499 611 187 32 8 chr6 119892758 119892882 -29624155 + B1F2 SINE Alu 19 145 -4 8 1499 475 215 21 0 chr6 119892935 119893028 -29624009 - PB1D7 SINE Alu 0 120 26 8 1499 239 303 168 121 chr6 119893028 119893108 -29623929 - ID_B1 SINE B4 -2 222 42 8 1499 236 250 269 0 chr6 119893437 119893545 -29623492 - B1F2 SINE Alu -10 139 3 8 1499 737 281 70 86 chr6 119894101 119894288 -29622749 - B3A SINE B2 -11 184 1 8 1499 562 144 11 0 chr6 119894335 119894425 -29622612 - B1_Mur3 SINE Alu 0 149 59 8 1499 364 260 143 9 chr6 119895874 119895979 -29621058 - B4A SINE B4 -12 280 162 8 1499 466 186 147 0 chr6 119895997 119896099 -29620938 - PB1D9 SINE Alu -2 118 2 8 1499 21 57 0 0 chr6 119896381 119896416 -29620621 + AT_rich Low_complexity Low_complexity 1 35 0 8 1499 808 211 72 0 chr6 119896606 119896758 -29620279 + B3 SINE B2 1 163 -53 8 1499 929 105 98 7 chr6 119897028 119897181 -29619856 - B2_Mm2 SINE B2 -27 168 2 8 1499 358 285 139 85 chr6 119897379 119897544 -29619493 - B3 SINE B2 -28 188 15 8 1499 372 312 58 7 chr6 119897570 119897709 -29619328 - B1F SINE Alu -1 148 3 8 1499 286 333 54 9 chr6 119899760 119899872 -29617165 - PB1D10 SINE Alu 0 117 1 8 1499 254 281 75 86 chr6 119900723 119900910 -29616127 - MER113A DNA MER1_type -5 309 125 8 1499 213 39 0 0 chr6 119901219 119901245 -29615792 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1499 490 200 90 0 chr6 119901245 119901345 -29615692 - PB1D9 SINE Alu -10 110 2 8 1499 612 214 20 41 chr6 119903498 119903644 -29613393 - B1_Mur1 SINE Alu -4 145 3 8 1499 384 317 27 40 chr6 119904514 119904662 -29612375 - ID_B1 SINE B4 -2 222 77 8 1499 246 250 123 91 chr6 119904871 119905025 -29612012 + MER104 DNA Tc2 7 165 -16 8 1499 279 253 165 0 chr6 119906319 119906410 -29610627 - PB1D9 SINE Alu -14 106 1 8 1499 343 250 21 32 chr6 119906469 119906564 -29610473 + B3 SINE B2 118 211 -5 8 1499 207 0 0 0 chr6 119906588 119906611 -29610426 + (TA)n Simple_repeat Simple_repeat 1 23 0 8 1499 414 0 0 0 chr6 119906611 119906656 -29610381 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1499 722 238 252 46 chr6 119906873 119907281 -29609756 - MTB_Mm LTR MaLR 0 419 1 8 1499 274 326 22 44 chr6 119907629 119907719 -29609318 - RSINE1 SINE B4 -75 90 3 8 1499 238 344 111 87 chr6 119908517 119908689 -29608348 - B4 SINE B4 -114 178 3 8 1499 303 227 0 15 chr6 119908841 119908908 -29608129 - RSINE1 SINE B4 -97 68 3 8 1499 192 40 0 0 chr6 119909752 119909777 -29607260 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1499 759 242 58 37 chr6 119909812 119910001 -29607036 - B3 SINE B2 -23 193 1 8 1499 462 248 87 17 chr6 119910046 119910161 -29606876 - B1_Mus1 SINE Alu -5 143 21 8 1499 770 168 45 70 chr6 119910278 119910477 -29606560 - B2_Mm2 SINE B2 0 195 2 8 1499 21 0 0 0 chr6 119911277 119911298 -29605739 + AT_rich Low_complexity Low_complexity 1 21 0 8 1499 25 51 0 0 chr6 119911887 119911926 -29605111 + AT_rich Low_complexity Low_complexity 1 39 0 9 1499 26 0 0 0 chr6 119914034 119914060 -29602977 + AT_rich Low_complexity Low_complexity 1 26 0 9 1499 343 264 52 52 chr6 119914203 119914319 -29602718 + PB1D10 SINE Alu 1 116 -1 9 1499 219 368 0 0 chr6 119914576 119914633 -29602404 + ID4_ SINE ID 25 81 -2 9 1499 317 336 117 20 chr6 119914636 119914885 -29602152 - B4 SINE B4 -17 275 3 9 1499 273 57 0 0 chr6 119916059 119916094 -29600943 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1499 24 0 0 0 chr6 119916877 119916901 -29600136 + AT_rich Low_complexity Low_complexity 1 24 0 9 1499 347 231 296 26 chr6 119918113 119918305 -29598732 - MER2 DNA MER2_type -8 337 94 9 1499 1576 187 33 7 chr6 119919707 119920014 -29597023 + Lx3B LINE L1 6654 6968 -5 9 1499 520 310 117 0 chr6 119920316 119920461 -29596576 - B3A SINE B2 -34 164 3 9 1499 280 193 18 0 chr6 119921153 119921210 -29595827 - PB1D9 SINE Alu -1 119 62 9 1499 222 116 0 0 chr6 119921324 119921367 -29595670 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1499 217 183 53 128 chr6 119924060 119924101 -29592936 + B1_Mur2 SINE Alu 62 144 -1 9 1499 291 143 0 0 chr6 119924101 119924150 -29592887 + ID_B1 SINE B4 174 222 -2 9 1499 1447 189 184 8 chr6 119924253 119924485 -29592552 - MTC LTR MaLR 0 421 132 9 1499 249 33 0 0 chr6 119924485 119924515 -29592522 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1499 1447 189 184 8 chr6 119924515 119924640 -29592397 - MTC LTR MaLR -290 131 2 9 1499 809 206 7 0 chr6 119924679 119924825 -29592212 + B1_Mur3 SINE Alu 2 148 -1 9 1499 370 182 22 62 chr6 119924946 119925055 -29591982 + B1_Mur1 SINE Alu 2 145 -4 9 1499 345 318 19 0 chr6 119925838 119925945 -29591092 - Lx8 LINE L1 -317 7156 7048 9 1499 1321 277 105 107 chr6 119925963 119926143 -29590894 - Lx8 LINE L1 -649 6824 6642 9 1499 419 238 74 37 chr6 119926143 119926278 -29590759 + B1_Mus2 SINE Alu 2 141 -6 9 1499 1321 277 105 107 chr6 119926278 119926828 -29590209 - Lx8 LINE L1 -832 6641 6095 9 1499 4156 101 56 12 chr6 119927004 119927666 -29589371 - Lx4B LINE L1 -492 5385 4695 9 1499 2936 140 41 13 chr6 119927655 119928358 -29588679 + Lx4B LINE L1 5407 6157 -901 9 1499 734 276 68 11 chr6 119928357 119928621 -29588416 - L1_Mur2 LINE L1 -1574 4306 4028 9 1499 839 282 14 40 chr6 119928719 119928941 -29588096 + ID_B1 SINE B4 8 223 -1 9 1499 375 204 8 157 chr6 119929652 119929679 -29587358 + MT2B LTR ERVL 145 151 -450 9 1499 765 217 0 14 chr6 119929679 119929824 -29587213 + B1_Mur4 SINE Alu 2 144 -6 9 1499 528 231 8 22 chr6 119930658 119930813 -29586224 + B3 SINE B2 33 181 -17 9 1500 811 187 24 34 chr6 119931766 119931939 -29585098 + B3 SINE B2 30 214 -2 9 1500 185 0 40 0 chr6 119932120 119932145 -29584892 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 9 1500 586 272 24 0 chr6 119932415 119932540 -29584497 + RSINE1 SINE B4 2 129 -36 9 1500 945 134 0 45 chr6 119932846 119933002 -29584035 + B1_Mur4 SINE Alu 2 150 0 9 1500 198 91 0 0 chr6 119933050 119933083 -29583954 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 9 1500 835 129 50 7 chr6 119933381 119933521 -29583516 - B1_Mus1 SINE Alu 0 148 3 9 1500 253 271 97 139 chr6 119933535 119933639 -29583398 + PB1D10 SINE Alu 26 126 -1 9 1500 1200 129 21 0 chr6 119933658 119933844 -29583193 + B2_Mm2 SINE B2 1 190 -5 9 1500 270 349 0 0 chr6 119933859 119933922 -29583115 + ID4_ SINE ID 8 70 -13 9 1500 490 129 80 34 chr6 119935112 119935200 -29581837 - PB1D9 SINE Alu -6 114 23 9 1500 686 270 73 0 chr6 119935867 119936045 -29580992 + B3 SINE B2 5 195 -21 9 1500 943 16 16 0 chr6 119936048 119936169 -29580868 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 9 1500 29 28 0 0 chr6 119936650 119936686 -29580351 + AT_rich Low_complexity Low_complexity 1 36 0 9 1500 635 297 129 62 chr6 119936798 119937139 -29579898 + MLT1A0 LTR MaLR 2 365 0 9 1500 476 240 19 3 chr6 119937147 119937286 -29579751 + L1MB5 LINE L1 5746 5890 -284 9 1500 1159 156 5 32 chr6 119937586 119937805 -29579232 - Lx2B LINE L1 0 7000 6788 9 1500 185 328 172 0 chr6 119938743 119938865 -29578172 + L2a LINE L2 3273 3415 -11 9 1500 460 277 9 9 chr6 119939052 119939185 -29577852 + MTEb LTR MaLR 1 127 -252 9 1500 1045 200 29 130 chr6 119939189 119939505 -29577532 + MTEb LTR MaLR 96 379 0 9 1500 341 224 57 192 chr6 119939508 119939773 -29577264 + MTE-int LTR MaLR 347 575 -1005 9 1500 1078 74 0 0 chr6 119939773 119939908 -29577129 + B1_Mus2 SINE Alu 2 136 -11 9 1500 806 98 9 0 chr6 119940753 119940865 -29576172 - B1_Mus2 SINE Alu -12 135 23 9 1500 213 39 0 0 chr6 119941132 119941158 -29575879 + (TATATG)n Simple_repeat Simple_repeat 4 29 0 9 1500 225 317 76 84 chr6 119941662 119941793 -29575244 + MER20 DNA MER1_type 17 146 -73 9 1500 26 0 0 0 chr6 119942054 119942080 -29574957 + AT_rich Low_complexity Low_complexity 1 26 0 9 1500 261 119 0 0 chr6 119942775 119942817 -29574220 + (TA)n Simple_repeat Simple_repeat 1 42 0 9 1500 324 311 145 67 chr6 119942861 119943040 -29573997 - B3A SINE B2 -2 196 4 9 1500 293 250 78 0 chr6 119943046 119943110 -29573927 - PB1D10 SINE Alu -1 116 48 9 1500 474 316 77 0 chr6 119943161 119943278 -29573759 + RSINE1 SINE B4 37 162 -3 9 1500 782 249 17 17 chr6 119943400 119943580 -29573457 + B3A SINE B2 1 180 -18 9 1500 1166 43 0 0 chr6 119943594 119943732 -29573305 + B1_Mm SINE Alu 1 138 -9 9 1500 321 26 0 0 chr6 119943738 119943776 -29573261 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1500 1244 184 16 96 chr6 119944021 119944075 -29572962 + Lx9 LINE L1 6798 6835 -809 9 1500 3682 65 2 10 chr6 119944075 119944558 -29572479 + L1_Mus1 LINE L1 6089 6567 0 9 1500 1244 184 16 96 chr6 119944558 119944816 -29572221 + Lx9 LINE L1 6836 7085 -559 9 1500 1368 207 87 23 chr6 119944817 119945207 -29571830 + Lx9 LINE L1 7229 7643 -1 9 1500 1297 95 16 21 chr6 119945361 119945555 -29571482 + B2_Mm2 SINE B2 1 193 -2 9 1500 779 242 53 42 chr6 119945999 119946189 -29570848 - B3 SINE B2 -24 192 1 9 1500 1209 240 214 29 chr6 119946323 119946953 -29570084 + Lx8 LINE L1 6308 7054 -419 9 1500 1009 255 78 30 chr6 119946963 119947030 -29570007 + Lx8 LINE L1 6674 6740 -733 9 1500 885 112 246 22 chr6 119947030 119947213 -29569824 - URR1A DNA MER1_type -1 225 2 9 1500 1009 255 78 30 chr6 119947213 119947477 -29569560 + Lx8 LINE L1 6741 7021 -452 9 1500 875 172 7 0 chr6 119947500 119947645 -29569392 + B1_Mus1 SINE Alu 2 147 -1 9 1500 1249 68 17 6 chr6 119947784 119947962 -29569075 + L1_Mus3 LINE L1 6457 6636 -2 9 1500 319 336 85 45 chr6 119948024 119948270 -29568767 + Lx8 LINE L1 7213 7468 -5 9 1500 451 256 110 8 chr6 119948272 119948390 -29568647 - B1_Mus1 SINE Alu -5 143 14 9 1500 219 313 30 0 chr6 119948346 119948413 -29568624 - B4 SINE B4 -152 140 72 9 1500 21 0 0 0 chr6 119948544 119948565 -29568472 + AT_rich Low_complexity Low_complexity 1 21 0 9 1500 1034 88 14 0 chr6 119948582 119948730 -29568307 - B2_Mm1t SINE B2 -40 153 4 9 1500 5994 51 9 0 chr6 119948730 119949469 -29567568 + L1Md_F2 LINE L1 5824 6569 -13 9 1500 1109 195 204 0 chr6 119949584 119949892 -29567145 - ORR1D1 LTR MaLR 0 374 4 9 1500 24 0 0 0 chr6 119950030 119950054 -29566983 + AT_rich Low_complexity Low_complexity 1 24 0 9 1500 492 195 97 0 chr6 119950504 119950617 -29566420 - ID_B1 SINE B4 0 224 101 9 1500 595 307 51 42 chr6 119950649 119950863 -29566174 - ID_B1 SINE B4 0 224 9 9 1500 197 159 23 0 chr6 119950878 119950922 -29566115 + CT-rich Low_complexity Low_complexity 1 45 0 9 1500 484 270 15 38 chr6 119950923 119951054 -29565983 + B1F SINE Alu 10 137 -12 9 1500 363 326 0 50 chr6 119951173 119951312 -29565725 + B3A SINE B2 63 194 -4 9 1500 823 276 66 0 chr6 119951343 119951539 -29565498 - B3 SINE B2 -6 210 2 9 1500 194 91 30 0 chr6 119951557 119951590 -29565447 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 1500 320 208 122 27 chr6 119951844 119951918 -29565119 + B3A SINE B2 10 90 -108 9 1500 1007 62 0 171 chr6 119952544 119952720 -29564317 + B1_Mm SINE Alu 1 146 -1 9 1500 1068 110 0 0 chr6 119952754 119952900 -29564137 + B1_Mm SINE Alu 2 147 0 9 1500 1182 68 0 0 chr6 119953009 119953157 -29563880 + B1_Mus1 SINE Alu 1 148 0 9 1500 695 225 35 0 chr6 119954055 119954197 -29562840 - B1_Mm SINE Alu 0 147 1 9 1500 588 294 11 16 chr6 119954246 119954433 -29562604 + B3A SINE B2 2 187 -11 9 1500 458 278 112 10 chr6 119954470 119954666 -29562371 + Charlie4a DNA MER1_type 77 292 -216 9 1500 484 306 242 30 chr6 119954798 119955095 -29561942 + MLT1A0 LTR MaLR 1 360 -5 9 1500 453 19 0 0 chr6 119955266 119955320 -29561717 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 1500 389 301 24 66 chr6 119956380 119956547 -29560490 + RSINE1 SINE B4 3 162 -3 9 1500 192 40 0 0 chr6 119956648 119956673 -29560364 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 9 1500 277 241 37 25 chr6 119957455 119957536 -29559501 + PB1D10 SINE Alu 36 117 0 9 1500 438 271 83 9 chr6 119957571 119957679 -29559358 - PB1 SINE Alu -11 116 1 9 1500 264 343 87 29 chr6 119957596 119957696 -29559341 - B4 SINE B4 -119 173 66 9 1500 354 330 53 35 chr6 119957696 119957809 -29559228 + B1F SINE Alu 3 117 -32 9 1500 333 0 0 0 chr6 119957809 119957846 -29559191 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1500 253 268 149 52 chr6 119959417 119959551 -29557486 + RSINE1 SINE B4 4 150 -15 9 1500 247 314 116 0 chr6 119959941 119959952 -29557085 + ID_B1 SINE B4 73 93 -131 9 1500 323 302 115 0 chr6 119959952 119960048 -29556989 + PB1D10 SINE Alu 3 109 -8 9 1500 243 358 0 47 chr6 119960118 119960203 -29556834 + B2_Mm2 SINE B2 2 82 -113 9 1500 1305 170 103 6 chr6 119960303 119960622 -29556415 + Lx9 LINE L1 7287 7636 -8 9 1500 236 269 349 9 chr6 119960675 119960784 -29556253 + RSINE1 SINE B4 2 147 -18 1 1500 610 256 107 25 chr6 119961505 119961701 -29555336 - B3 SINE B2 -4 212 1 1 1500 1222 102 16 16 chr6 119961830 119962020 -29555017 + B2_Mm2 SINE B2 2 191 -4 1 1500 496 49 0 24 chr6 119962028 119962112 -29554925 + L1Md_F2 LINE L1 6501 6582 0 1 1500 30 45 0 0 chr6 119962373 119962417 -29554620 + AT_rich Low_complexity Low_complexity 1 44 0 1 1500 189 0 0 0 chr6 119963544 119963565 -29553472 + (CCA)n Simple_repeat Simple_repeat 2 22 0 1 1500 533 302 9 121 chr6 119963763 119963978 -29553059 - B4 SINE B4 -19 273 83 1 1500 191 61 30 0 chr6 119963984 119964017 -29553020 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1500 310 169 200 0 chr6 119964017 119964082 -29552955 - B4 SINE B4 -212 80 3 1 1500 40 37 0 0 chr6 119964243 119964297 -29552740 + AT_rich Low_complexity Low_complexity 1 54 0 1 1500 237 306 0 0 chr6 119964783 119964832 -29552205 + B1F1 SINE Alu 1 49 -100 1 1500 655 248 12 25 chr6 119964837 119964998 -29552039 + RSINE1 SINE B4 3 161 -4 1 1500 211 192 19 37 chr6 119965010 119965064 -29551973 + GA-rich Low_complexity Low_complexity 3 55 0 1 1500 323 265 84 0 chr6 119965078 119965161 -29551876 + ID_B1 SINE B4 128 217 -7 1 1500 279 197 61 0 chr6 119965355 119965421 -29551616 + B1_Mur1 SINE Alu 80 149 0 1 1500 785 72 7 11 chr6 119965692 119965822 -29551215 - B1_Mm SINE Alu -1 148 17 1 1500 260 248 60 30 chr6 119965861 119965994 -29551043 - L1MA6 LINE L1 -149 6151 6015 1 1500 255 303 186 6 chr6 119966020 119966176 -29550861 - L1M3 LINE L1 -720 5460 5277 1 1500 1118 88 0 0 chr6 119966181 119966328 -29550709 + B1_Mus1 SINE Alu 1 147 -1 1 1500 201 268 14 14 chr6 119966328 119966400 -29550637 + (CATA)n Simple_repeat Simple_repeat 1 72 0 1 1500 635 321 61 15 chr6 119966897 119967093 -29549944 - B4A SINE B4 -64 228 24 1 1500 291 116 0 0 chr6 119967258 119967301 -29549736 - ID_B1 SINE B4 -104 120 78 1 1500 624 81 0 0 chr6 119967334 119967421 -29549616 + (TG)n Simple_repeat Simple_repeat 2 88 0 1 1500 258 30 0 0 chr6 119967421 119967448 -29549589 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 1500 277 188 58 0 chr6 119967569 119967638 -29549399 + Lx7 LINE L1 7526 7598 -98 1 1500 968 125 102 6 chr6 119967676 119967853 -29549184 + B2_Mm2 SINE B2 2 195 0 1 1500 23 0 0 0 chr6 119968099 119968122 -29548915 + AT_rich Low_complexity Low_complexity 1 23 0 1 1500 29 0 0 0 chr6 119968342 119968371 -29548666 + AT_rich Low_complexity Low_complexity 1 29 0 1 1500 452 229 73 0 chr6 119968376 119968485 -29548552 + PB1D9 SINE Alu 1 117 -3 1 1500 660 242 114 6 chr6 119968485 119968651 -29548386 + B3 SINE B2 3 186 -30 1 1500 744 222 144 20 chr6 119969135 119969337 -29547700 + MTD LTR MaLR 1 227 -192 1 1500 471 198 181 0 chr6 119969324 119969440 -29547597 + B1_Mus1 SINE Alu 6 142 -6 1 1500 211 216 0 0 chr6 119969444 119969481 -29547556 + polypurine Low_complexity Low_complexity 4 40 0 1 1500 186 103 0 0 chr6 119969762 119969791 -29547246 + (TATG)n Simple_repeat Simple_repeat 3 31 0 1 1500 22 0 0 0 chr6 119969827 119969849 -29547188 + AT_rich Low_complexity Low_complexity 1 22 0 1 1500 362 192 137 0 chr6 119969863 119969936 -29547101 + B1_Mus1 SINE Alu 5 87 -61 1 1500 509 314 112 10 chr6 119970059 119970255 -29546782 + B3A SINE B2 1 216 0 1 1500 371 271 196 38 chr6 119970286 119970470 -29546567 + ID_B1 SINE B4 10 222 -2 1 1500 28 71 0 0 chr6 119970596 119970652 -29546385 + AT_rich Low_complexity Low_complexity 1 56 0 1 1500 277 261 182 0 chr6 119970689 119970777 -29546260 + PB1 SINE Alu 24 127 0 1 1500 335 286 22 0 chr6 119970788 119970879 -29546158 + ID4_ SINE ID 10 102 -50 1 1500 1399 81 16 0 chr6 119971719 119971904 -29545133 + B2_Mm2 SINE B2 2 189 -6 1 1500 298 352 38 0 chr6 119971949 119972054 -29544983 + PB1D10 SINE Alu 8 116 -1 1 1500 428 319 62 21 chr6 119972971 119973115 -29543922 - RSINE1 SINE B4 -4 161 12 1 1500 320 288 51 51 chr6 119973301 119973418 -29543619 + PB1D10 SINE Alu 1 117 0 1 1500 309 331 55 41 chr6 119973418 119973442 -29543595 + ID_B1 SINE B4 82 224 0 1 1500 369 209 15 0 chr6 119973458 119973525 -29543512 + ID4 SINE ID 5 72 -11 1 1500 366 42 0 0 chr6 119973527 119973575 -29543462 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1500 228 225 0 0 chr6 119973795 119973835 -29543202 - ID4_ SINE ID -32 51 12 1 1500 221 197 129 16 chr6 119973904 119973966 -29543071 - L3b LINE CR1 -4 478 410 1 1500 21 36 0 0 chr6 119974365 119974393 -29542644 + AT_rich Low_complexity Low_complexity 1 28 0 1 1500 267 310 149 0 chr6 119974393 119974480 -29542557 + MIRc SINE MIR 47 146 -122 1 1500 353 291 73 66 chr6 119974668 119974804 -29542233 + RSINE1 SINE B4 15 151 -14 1 1500 343 248 121 53 chr6 119974886 119975018 -29542019 - B4A SINE B4 -47 245 105 1 1500 496 219 156 39 chr6 119974913 119975041 -29541996 - B1F2 SINE Alu -5 144 2 1 1500 848 184 14 7 chr6 119975043 119975185 -29541852 - B1_Mur1 SINE Alu -1 148 6 1 1500 617 230 65 138 chr6 119975258 119975475 -29541562 + B3 SINE B2 2 202 -14 1 1500 218 205 0 0 chr6 119975765 119975804 -29541233 - B1_Mus1 SINE Alu -100 48 10 1 1500 524 132 0 0 chr6 119975884 119975960 -29541077 + B1_Mus1 SINE Alu 2 77 -71 1 1500 1918 184 30 15 chr6 119975960 119976367 -29540670 + Lx LINE L1 6237 6649 -5 1 1500 1068 43 42 7 chr6 119976812 119976954 -29540083 + B1_Mus2 SINE Alu 1 147 0 1 1500 351 222 71 44 chr6 119977125 119977238 -29539799 + PB1D10 SINE Alu 1 116 -1 1 1500 523 180 40 0 chr6 119977633 119977733 -29539304 - PB1D9 SINE Alu -12 108 5 1 1500 288 329 121 7 chr6 119978074 119978215 -29538822 + RSINE1 SINE B4 3 159 -6 1 1500 681 231 0 0 chr6 119978217 119978338 -29538699 - RSINE1 SINE B4 -36 129 9 1 1500 24 0 0 0 chr6 119978346 119978370 -29538667 + AT_rich Low_complexity Low_complexity 1 24 0 1 1500 348 64 0 0 chr6 119978371 119978418 -29538619 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1500 1492 43 10 21 chr6 119978478 119978670 -29538367 + B2_Mm2 SINE B2 1 190 -5 1 1500 236 146 49 0 chr6 119978717 119978758 -29538279 - PB1D7 SINE Alu -5 115 73 1 1500 1035 47 0 0 chr6 119978788 119978916 -29538121 - B1_Mus1 SINE Alu 0 148 21 1 1500 531 138 0 22 chr6 119978913 119979002 -29538035 - B1F SINE Alu -62 87 1 1 1500 367 223 162 19 chr6 119979114 119979219 -29537818 - B1_Mus1 SINE Alu 0 120 1 1 1500 314 249 28 117 chr6 119979219 119979282 -29537755 - MT2B LTR ERVL -424 160 111 1 1500 664 176 130 0 chr6 119979326 119979457 -29537580 - B1_Mur4 SINE Alu 0 150 3 1 1500 594 167 23 174 chr6 119979515 119979733 -29537304 + B2_Mm1a SINE B2 1 185 -8 1 1500 27 0 0 0 chr6 119979757 119979784 -29537253 + AT_rich Low_complexity Low_complexity 1 27 0 1 1500 706 189 79 7 chr6 119979784 119979923 -29537114 + B1_Mur3 SINE Alu 1 149 0 1 1500 713 164 89 0 chr6 119980026 119980172 -29536865 - URR1A DNA MER1_type 0 226 68 1 1500 1372 84 5 10 chr6 119980337 119980529 -29536508 - B2_Mm1t SINE B2 -1 192 2 1 1500 227 313 18 143 chr6 119980792 119980960 -29536077 - B1F2 SINE Alu -2 147 1 1 1500 394 207 23 47 chr6 119981018 119981104 -29535933 + B1F SINE Alu 66 149 0 1 1500 1149 54 0 13 chr6 119981155 119981304 -29535733 + B1_Mus1 SINE Alu 2 148 0 1 1500 26 74 0 0 chr6 119981310 119981364 -29535673 + AT_rich Low_complexity Low_complexity 1 54 0 1 1500 260 64 102 41 chr6 119981366 119981415 -29535622 + B2_Mm2 SINE B2 46 97 -98 1 1500 1183 68 0 0 chr6 119981877 119982025 -29535012 + B1_Mus1 SINE Alu 1 148 0 1 1500 189 0 0 0 chr6 119982329 119982350 -29534687 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1500 746 172 0 15 chr6 119982369 119982499 -29534538 - B1_Mus1 SINE Alu -19 129 2 1 1500 317 312 123 18 chr6 119982689 119982852 -29534185 - Lx8 LINE L1 -205 7268 7089 1 1500 233 345 0 0 chr6 119982867 119982922 -29534115 - BC1_Mm scRNA scRNA -86 66 12 1 1500 551 286 22 15 chr6 119982973 119983108 -29533929 - B1F1 SINE Alu -8 141 6 1 1500 267 300 56 91 chr6 119983007 119983150 -29533887 - MT2B LTR ERVL -341 260 123 1 1500 592 291 64 0 chr6 119983274 119983415 -29533622 - RSINE1 SINE B4 -2 163 14 1 1500 1361 74 16 16 chr6 119983611 119983804 -29533233 + B2_Mm2 SINE B2 2 194 -1 1 1500 811 80 0 0 chr6 119983838 119983950 -29533087 + B2_Mm1a SINE B2 74 185 -8 1 1500 207 0 0 0 chr6 119984100 119984123 -29532914 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 1 1500 363 288 118 29 chr6 119984136 119984272 -29532765 + PB1D10 SINE Alu 2 149 0 1 1500 1213 48 7 0 chr6 119984302 119984448 -29532589 - B1_Mus2 SINE Alu 0 147 1 1 1500 1198 41 7 14 chr6 119984478 119984626 -29532411 + B1_Mus1 SINE Alu 2 148 0 1 1500 270 0 0 0 chr6 119984629 119984659 -29532378 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1 1500 1060 79 0 0 chr6 119985018 119985157 -29531880 - B1_Mm SINE Alu 0 147 9 1 1500 311 0 26 0 chr6 119985458 119985497 -29531540 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 1 1500 35 24 0 0 chr6 119985497 119985539 -29531498 + AT_rich Low_complexity Low_complexity 1 42 0 1 1500 397 267 57 9 chr6 119985702 119985808 -29531229 + B1F1 SINE Alu 3 113 -7 1 1500 970 63 24 0 chr6 119986066 119986193 -29530844 + B1_Mus1 SINE Alu 11 140 -8 1 1500 183 42 0 0 chr6 119986193 119986217 -29530820 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1500 325 238 27 130 chr6 119986218 119986330 -29530707 - PB1D10 SINE Alu -13 104 7 1 1500 221 206 119 60 chr6 119986514 119986581 -29530456 + ID4 SINE ID 3 73 -10 1 1500 209 200 0 0 chr6 119987830 119987875 -29529162 + (CTG)n Simple_repeat Simple_repeat 2 46 0 1 1500 243 0 0 0 chr6 119988240 119988267 -29528770 + (CTCG)n Simple_repeat Simple_repeat 1 27 0 1 1500 22 70 0 0 chr6 119988371 119988414 -29528623 + GC_rich Low_complexity Low_complexity 1 43 0 1 1500 33 0 0 0 chr6 119988715 119988748 -29528289 + GC_rich Low_complexity Low_complexity 1 33 0 1 1500 198 167 0 0 chr6 119989027 119989063 -29527974 + GA-rich Low_complexity Low_complexity 4 39 0 1 1500 311 95 0 0 chr6 119991074 119991116 -29525921 + B1_Mur4 SINE Alu 105 146 -4 1 1500 492 18 0 0 chr6 119991117 119991174 -29525863 + (GAAA)n Simple_repeat Simple_repeat 3 59 0 1 1500 255 61 0 0 chr6 119991442 119991475 -29525562 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1500 910 179 0 0 chr6 119992065 119992210 -29524827 + B3 SINE B2 6 150 -66 1 1500 239 273 12 38 chr6 119992514 119992594 -29524443 + ID4 SINE ID 2 79 -4 1 1500 198 71 0 0 chr6 119993478 119993506 -29523531 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1500 748 168 8 23 chr6 119993525 119993653 -29523384 - B1_Mur3 SINE Alu -1 148 23 1 1500 489 253 19 76 chr6 119993653 119993683 -29523354 - ID_B1 SINE B4 -2 222 74 1 1500 248 0 31 0 chr6 119993834 119993866 -29523171 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1500 1139 52 0 0 chr6 119993866 119994002 -29523035 - B1_Mus1 SINE Alu -12 136 1 1 1500 531 82 0 0 chr6 119994601 119994674 -29522363 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1500 265 267 35 0 chr6 119995241 119995327 -29521710 - MER53 DNA hAT -9 184 96 1 1500 456 312 48 1 chr6 119995324 119995458 -29521579 - B1F SINE Alu -2 147 1 1 1500 820 191 121 22 chr6 119995879 119996061 -29520976 + B3 SINE B2 2 201 -15 1 1500 1365 85 21 0 chr6 119996136 119996325 -29520712 - B2_Mm2 SINE B2 0 195 3 1 1500 928 126 0 22 chr6 119996325 119996456 -29520581 - B1_Mus1 SINE Alu -12 136 7 1 1500 270 292 0 34 chr6 119996354 119996503 -29520534 - ORR1B1-int LTR MaLR -755 754 611 1 1500 21 0 0 0 chr6 119996543 119996564 -29520473 + AT_rich Low_complexity Low_complexity 1 21 0 1 1500 339 167 0 0 chr6 119997100 119997166 -29519871 + (TTA)n Simple_repeat Simple_repeat 1 66 0 1 1500 374 284 24 15 chr6 119997195 119997319 -29519718 - RSINE1 SINE B4 -161 131 1 1 1500 207 69 0 0 chr6 119997324 119997353 -29519684 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1500 380 327 77 32 chr6 119997353 119997508 -29519529 - L3 LINE CR1 -131 4358 4197 1 1500 207 0 0 0 chr6 119997582 119997605 -29519432 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 1 1500 1174 63 0 0 chr6 119997607 119997749 -29519288 - B1_Mus1 SINE Alu -6 142 1 1 1500 189 0 0 0 chr6 119997838 119997859 -29519178 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1500 1241 34 0 0 chr6 119998335 119998482 -29518555 + B1_Mus2 SINE Alu 1 147 0 1 1500 270 185 47 64 chr6 119998495 119998573 -29518464 + PB1D7 SINE Alu 3 82 -45 1 1500 674 164 63 112 chr6 119998817 119998945 -29518092 + URR1B DNA MER1_type 30 156 -69 1 1500 1168 49 14 0 chr6 119998945 119999089 -29517948 + B1_Mm SINE Alu 2 147 0 1 1500 674 164 63 112 chr6 119999089 119999166 -29517871 + URR1B DNA MER1_type 157 225 0 1 1500 210 306 32 0 chr6 119999447 119999509 -29517528 + B4 SINE B4 2 65 -227 1 1500 220 184 0 0 chr6 119999563 119999601 -29517436 + B1_Mus1 SINE Alu 11 48 -100 1 1500 912 147 21 0 chr6 119999796 119999939 -29517098 + B1_Mus1 SINE Alu 1 146 -2 1 1500 467 300 36 0 chr6 120000217 120000357 -29516680 + B1_Mur2 SINE Alu 3 147 -2 1 1500 453 216 63 0 chr6 120000354 120000465 -29516572 + B1F SINE Alu 32 149 0 2 1500 293 275 25 0 chr6 120000534 120000549 -29516488 - BC1_Mm scRNA scRNA -67 85 8 3 1500 337 197 0 0 chr6 120000549 120000610 -29516427 - tRNA-Ala-GCA tRNA tRNA -13 62 2 4 1500 352 300 8 32 chr6 120001234 120001358 -29515679 + B4 SINE B4 3 123 -169 5 1500 488 61 0 0 chr6 120001446 120001512 -29515525 + L1_Mus2 LINE L1 6501 6566 0 6 1500 878 0 0 10 chr6 120001518 120001621 -29515416 + (GAA)n Simple_repeat Simple_repeat 2 103 0 7 1500 289 316 0 0 chr6 120001634 120001713 -29515324 + RSINE1 SINE B4 78 156 -9 8 1500 423 0 0 0 chr6 120001716 120001763 -29515274 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1500 261 98 0 0 chr6 120001786 120001827 -29515210 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1 1500 225 0 0 0 chr6 120001839 120001864 -29515173 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1500 515 174 113 24 chr6 120001867 120001991 -29515046 - B1_Mur4 SINE Alu -6 144 10 1 1500 297 191 165 87 chr6 120002450 120002553 -29514484 + MT2B LTR ERVL 147 257 -344 1 1500 685 160 79 16 chr6 120002472 120002599 -29514438 + B1_Mur3 SINE Alu 14 148 -1 1 1500 509 68 0 13 chr6 120003626 120003701 -29513336 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1500 741 216 0 33 chr6 120003835 120003988 -29513049 - B1_Mur1 SINE Alu 0 149 2 1 1500 287 194 90 0 chr6 120004027 120004094 -29512943 + B4 SINE B4 146 218 -74 1 1500 1020 92 49 0 chr6 120004130 120004272 -29512765 + B1_Mur4 SINE Alu 2 150 0 1 1500 237 139 0 0 chr6 120004316 120004359 -29512678 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1500 810 178 20 0 chr6 120004400 120004546 -29512491 + B3A SINE B2 14 162 -36 2 1500 28 61 0 15 chr6 120004574 120004611 -29512426 + AT_rich Low_complexity Low_complexity 1 37 0 2 1500 1067 206 15 5 chr6 120004611 120004811 -29512226 + B3 SINE B2 1 202 -14 2 1500 28 61 0 15 chr6 120004811 120004840 -29512197 + AT_rich Low_complexity Low_complexity 1 29 0 2 1500 1410 234 224 37 chr6 120004840 120005410 -29511627 + L1MB4 LINE L1 5436 6132 -48 2 1500 1638 32 5 0 chr6 120005410 120005599 -29511438 + B2_Mm1a SINE B2 1 190 -3 2 1500 192 40 0 0 chr6 120005604 120005629 -29511408 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1500 657 214 133 77 chr6 120005629 120005665 -29511372 + L1MB4 LINE L1 6136 6163 -17 2 1500 348 24 0 0 chr6 120005665 120005706 -29511331 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1500 657 214 133 77 chr6 120005706 120005727 -29511310 + L1MB4 LINE L1 6164 6180 0 2 1500 252 0 0 0 chr6 120006459 120006487 -29510550 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1500 246 175 86 16 chr6 120006491 120006619 -29510418 + (TA)n Simple_repeat Simple_repeat 1 137 0 2 1500 539 206 28 0 chr6 120006621 120006728 -29510309 + B1_Mur2 SINE Alu 29 138 -11 3 1500 828 166 72 18 chr6 120006837 120007003 -29510034 - B3 SINE B2 -38 178 4 3 1500 969 267 153 18 chr6 120007017 120007410 -29509627 - L1MB2 LINE L1 -49 6122 5677 3 1500 505 276 0 0 chr6 120007435 120007540 -29509497 + RSINE1 SINE B4 46 150 -15 3 1500 396 155 0 0 chr6 120007550 120007621 -29509416 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 3 1500 301 297 75 70 chr6 120007791 120008019 -29509018 - ORR1E LTR MaLR -130 229 1 3 1500 543 291 21 0 chr6 120008133 120008274 -29508763 - RSINE1 SINE B4 -1 164 21 3 1500 286 214 71 0 chr6 120008361 120008431 -29508606 - LTR16A LTR ERVL -376 75 1 3 1500 1161 48 0 33 chr6 120008644 120008795 -29508242 - B1_Mus1 SINE Alu -2 146 1 3 1500 21 26 0 26 chr6 120008805 120008824 -29508213 + AT_rich Low_complexity Low_complexity 1 19 0 3 1500 1220 41 0 20 chr6 120008824 120008974 -29508063 + B1_Mus2 SINE Alu 1 147 0 4 1500 21 26 0 26 chr6 120008974 120008993 -29508044 + AT_rich Low_complexity Low_complexity 1 19 0 4 1500 2188 121 3 3 chr6 120009144 120009467 -29507570 - ORR1A3 LTR MaLR -2 324 2 4 1500 236 77 0 25 chr6 120009606 120009646 -29507391 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 4 1500 1194 66 36 0 chr6 120010038 120010204 -29506833 + B2_Mm2 SINE B2 2 173 -22 4 1500 207 0 0 0 chr6 120010266 120010289 -29506748 + (TC)n Simple_repeat Simple_repeat 1 23 0 4 1500 180 0 0 0 chr6 120010289 120010308 -29506729 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1500 494 231 19 9 chr6 120010899 120011004 -29506033 - PB1D10 SINE Alu -7 110 5 4 1500 334 235 39 48 chr6 120011036 120011139 -29505898 + RSINE1 SINE B4 62 163 -2 4 1500 1214 62 0 0 chr6 120011349 120011495 -29505542 - B1_Mus2 SINE Alu -1 146 1 4 1500 225 250 0 0 chr6 120011603 120011655 -29505382 - RSINE1 SINE B4 -111 54 3 5 1500 278 248 346 0 chr6 120011730 120011831 -29505206 + MER82 DNA MER2_type 6 141 -512 5 1500 301 212 448 8 chr6 120011997 120012122 -29504915 + B3A SINE B2 13 192 -6 5 1500 1345 94 61 0 chr6 120012490 120012671 -29504366 - B2_Mm2 SINE B2 -2 193 2 5 1500 501 319 70 9 chr6 120013059 120013274 -29503763 + MER82 DNA MER2_type 425 652 -1 5 1500 395 238 94 9 chr6 120013344 120013450 -29503587 + RSINE1 SINE B4 4 118 -47 5 1500 326 179 29 15 chr6 120013588 120013656 -29503381 - RMER17C LTR ERVK -341 69 1 5 1500 2999 71 38 7 chr6 120013867 120014292 -29502745 + L1_Mus3 LINE L1 6193 6630 -8 5 1500 26 0 0 0 chr6 120014358 120014384 -29502653 + AT_rich Low_complexity Low_complexity 1 26 0 5 1500 814 118 111 0 chr6 120014394 120014529 -29502508 + B1_Mur4 SINE Alu 1 150 0 5 1500 916 92 7 7 chr6 120015160 120015302 -29501735 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 5 1500 1594 151 100 44 chr6 120015302 120015691 -29501346 - RMER10A LTR ERVL -29 413 3 6 1500 189 0 0 0 chr6 120015742 120015763 -29501274 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1500 522 323 41 41 chr6 120016155 120016426 -29500611 - MTD LTR MaLR -134 285 15 6 1500 207 222 12 58 chr6 120016426 120016456 -29500581 + T-rich Low_complexity Low_complexity 58 83 0 6 1500 510 310 0 0 chr6 120016456 120016601 -29500436 - B1_Mus2 SINE Alu -1 146 2 6 1500 207 222 12 58 chr6 120016601 120016656 -29500381 + T-rich Low_complexity Low_complexity 2 57 0 6 1500 1227 41 7 0 chr6 120016660 120016807 -29500230 - B1_Mus1 SINE Alu 0 148 1 6 1500 858 242 5 10 chr6 120016807 120016824 -29500213 - B3A SINE B2 -7 191 176 6 1500 192 125 0 0 chr6 120016824 120016856 -29500181 + (CGTG)n Simple_repeat Simple_repeat 4 35 0 6 1500 858 242 5 10 chr6 120016856 120017030 -29500007 - B3A SINE B2 -23 175 1 6 1500 541 276 8 0 chr6 120017045 120017172 -29499865 - ID_B1 SINE B4 -7 217 90 6 1500 1186 41 0 26 chr6 120018655 120018806 -29498231 + B1_Mm SINE Alu 1 147 0 7 1500 626 213 0 23 chr6 120018954 120019084 -29497953 + B1_Mus1 SINE Alu 11 137 -11 7 1500 612 245 99 45 chr6 120019089 120019290 -29497747 - B3 SINE B2 -4 212 1 7 1500 530 236 83 7 chr6 120019360 120019505 -29497532 - B3 SINE B2 -5 211 56 7 1500 3453 207 86 50 chr6 120019516 120020385 -29496652 + RMER13B LTR ERVK 5 905 -3 7 1500 4004 156 40 6 chr6 120020517 120021209 -29495828 + RMER6D LTR ERVK 1 716 -4 7 1500 244 323 0 31 chr6 120021298 120021362 -29495675 + ID4_ SINE ID 1 62 -21 7 1500 320 119 0 33 chr6 120021352 120021398 -29495639 + B1_Mm SINE Alu 79 123 -24 7 1500 245 0 86 0 chr6 120021398 120021433 -29495604 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 7 1500 320 125 0 86 chr6 120021433 120021465 -29495572 + B1_Mm SINE Alu 124 150 0 7 1500 4007 89 5 34 chr6 120021500 120022084 -29494953 - RMER2 LTR ERV1 0 567 1 7 1500 1809 104 26 7 chr6 120022272 120022544 -29494493 - Lx2 LINE L1 0 6997 6721 8 1500 752 264 134 5 chr6 120022897 120023114 -29493923 - Lx8 LINE L1 -377 7096 6852 8 1500 341 179 15 0 chr6 120023132 120023199 -29493838 - URR1A DNA MER1_type -113 113 46 8 1500 369 245 68 68 chr6 120023256 120023374 -29493663 - ID_B1 SINE B4 -3 221 104 8 1500 300 281 97 62 chr6 120023374 120023400 -29493637 - B1F SINE Alu 0 149 1 8 1500 1044 263 66 30 chr6 120023433 120023766 -29493271 - MTEb LTR MaLR -13 366 22 8 1500 1174 82 0 0 chr6 120023819 120023966 -29493071 - B1_Mus2 SINE Alu 0 147 1 8 1500 611 217 199 59 chr6 120023971 120024157 -29492880 - B3 SINE B2 -4 212 1 8 1500 22 0 0 0 chr6 120024165 120024187 -29492850 + AT_rich Low_complexity Low_complexity 1 22 0 8 1500 318 80 0 0 chr6 120024192 120024242 -29492795 + (TC)n Simple_repeat Simple_repeat 1 50 0 8 1500 387 0 0 0 chr6 120024242 120024285 -29492752 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1500 606 250 83 7 chr6 120024289 120024434 -29492603 - RSINE1 SINE B4 -7 158 3 9 1500 740 105 113 0 chr6 120024747 120024880 -29492157 - B1_Mur4 SINE Alu 0 150 3 9 1500 533 259 46 23 chr6 120024880 120024923 -29492114 - B4 SINE B4 -200 92 46 9 1500 660 248 7 7 chr6 120025238 120025384 -29491653 - B1F SINE Alu -3 146 1 9 1500 362 165 9 28 chr6 120025433 120025539 -29491498 + (TA)n Simple_repeat Simple_repeat 2 105 0 9 1500 896 108 7 0 chr6 120025844 120025983 -29491054 + (TTTC)n Simple_repeat Simple_repeat 1 140 0 9 1500 792 90 0 16 chr6 120026002 120026126 -29490911 - B1_Mus1 SINE Alu 0 148 27 9 1500 598 261 0 0 chr6 120026217 120026347 -29490690 + ID_B1 SINE B4 95 224 0 9 1500 2066 133 426 12 chr6 120027274 120027753 -29489284 + RLTR33 LTR ERVK 2 678 0 9 1500 274 366 18 9 chr6 120027856 120027969 -29489068 - L4 LINE RTE -342 1687 1574 1 1500 239 113 0 19 chr6 120028040 120028094 -29488943 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1500 1211 48 0 7 chr6 120028096 120028244 -29488793 - B1_Mm SINE Alu 0 147 1 1 1500 277 300 0 0 chr6 120028259 120028329 -29488708 - PB1D10 SINE Alu 0 117 48 1 1500 558 200 8 7 chr6 120028385 120028495 -29488542 + B1_Mur2 SINE Alu 2 141 -8 1 1500 758 199 241 0 chr6 120028501 120028667 -29488370 + B3 SINE B2 1 206 -10 1 1500 724 155 208 49 chr6 120028741 120028924 -29488113 - B3 SINE B2 0 216 5 1 1500 28 0 0 0 chr6 120028935 120028963 -29488074 + AT_rich Low_complexity Low_complexity 1 28 0 1 1500 699 174 0 0 chr6 120029234 120029366 -29487671 + URR1B DNA MER1_type 94 225 0 1 1500 303 282 6 0 chr6 120029411 120029497 -29487540 + PB1D10 SINE Alu 9 97 -23 1 1500 1094 89 7 0 chr6 120029746 120029892 -29487145 + B1_Mus2 SINE Alu 1 147 0 1 1500 299 262 130 9 chr6 120029906 120030014 -29487023 + MER105 DNA DNA 57 177 -27 1 1500 444 141 148 20 chr6 120030202 120030303 -29486734 + B1_Mus2 SINE Alu 1 114 -33 1 1500 198 0 0 0 chr6 120030361 120030383 -29486654 + (CCA)n Simple_repeat Simple_repeat 2 23 0 1 1500 244 136 0 0 chr6 120030398 120030442 -29486595 + B1_Mm SINE Alu 104 147 0 1 1500 1041 75 0 0 chr6 120030603 120030736 -29486301 + B1_Mus2 SINE Alu 5 137 -10 1 1500 232 48 23 23 chr6 120030736 120030779 -29486258 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1500 402 226 18 45 chr6 120030929 120031040 -29485997 + RSINE1 SINE B4 23 130 -35 1 1500 910 206 29 28 chr6 120031219 120031431 -29485606 + B3 SINE B2 1 195 0 1 1500 800 141 8 0 chr6 120032761 120032889 -29484148 - B1_Mur4 SINE Alu -21 129 1 1 1500 258 311 58 16 chr6 120032991 120033112 -29483925 - MIR SINE MIR -60 148 23 1 1500 23 0 0 0 chr6 120033454 120033477 -29483560 + AT_rich Low_complexity Low_complexity 1 23 0 1 1500 619 274 6 71 chr6 120035155 120035324 -29481713 + B3 SINE B2 6 163 -53 1 1500 771 136 0 43 chr6 120035853 120035991 -29481046 - B1_Mur2 SINE Alu -6 143 12 1 1500 476 261 9 18 chr6 120036272 120036385 -29480652 + PB1D7 SINE Alu 1 112 -8 1 1500 1155 74 0 20 chr6 120036395 120036546 -29480491 + B1_Mus1 SINE Alu 1 148 0 1 1500 229 64 20 41 chr6 120036549 120036598 -29480439 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 1500 411 259 27 18 chr6 120036653 120036763 -29480274 + PB1D10 SINE Alu 6 116 -1 1 1500 642 237 19 81 chr6 120036923 120037134 -29479903 - B3A SINE B2 0 198 1 1 1500 692 176 31 39 chr6 120037163 120037293 -29479744 - B1_Mur1 SINE Alu -10 139 11 1 1500 1736 16 0 0 chr6 120037293 120037486 -29479551 + B2_Mm1a SINE B2 1 193 0 1 1500 356 309 14 54 chr6 120037520 120037667 -29479370 - MER3 DNA MER1_type -62 147 7 1 1500 2414 105 78 10 chr6 120037933 120038318 -29478719 - IAPLTR2a LTR ERVK 0 411 1 1 1500 212 116 0 65 chr6 120038387 120038419 -29478618 + T-rich Low_complexity Low_complexity 12 43 0 1 1500 1274 27 0 0 chr6 120038419 120038565 -29478472 - B1_Mus2 SINE Alu 0 147 2 1 1500 212 116 0 65 chr6 120038565 120038578 -29478459 + T-rich Low_complexity Low_complexity 1 11 0 1 1500 479 185 15 23 chr6 120038601 120038734 -29478303 + CT-rich Low_complexity Low_complexity 2 133 0 1 1500 934 132 21 0 chr6 120038740 120038884 -29478153 - B1_Mur3 SINE Alu -2 147 1 1 1500 282 120 353 29 chr6 120038988 120039090 -29477947 - B2_Mm2 SINE B2 -14 181 47 1 1500 1056 121 90 0 chr6 120039137 120039303 -29477734 - B2_Mm2 SINE B2 -14 181 1 1 1500 190 324 37 98 chr6 120039397 120039561 -29477476 - MIR3 SINE MIR -23 185 32 1 1500 401 283 36 18 chr6 120039625 120039771 -29477266 + L1MA6 LINE L1 6140 6279 -21 1 1500 356 237 79 0 chr6 120039771 120039847 -29477190 - ID4 SINE ID 0 83 2 1 1500 239 301 32 71 chr6 120039847 120039864 -29477173 + L1MA6 LINE L1 6275 6288 -3 1 1500 264 283 93 19 chr6 120039871 120039979 -29477058 - PB1D7 SINE Alu -3 117 2 1 1500 21 0 0 0 chr6 120040004 120040025 -29477012 + AT_rich Low_complexity Low_complexity 1 21 0 1 1500 191 0 0 94 chr6 120040033 120040065 -29476972 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1500 581 155 18 9 chr6 120040065 120040176 -29476861 - B1_Mur4 SINE Alu -9 141 30 1 1500 1239 41 0 0 chr6 120040309 120040455 -29476582 + B1_Mm SINE Alu 2 147 0 1 1500 227 241 50 33 chr6 120040471 120040531 -29476506 - PB1 SINE Alu -61 66 6 1 1500 325 253 11 0 chr6 120040979 120041070 -29475967 + MER58A DNA MER1_type 44 135 -89 1 1500 406 328 28 28 chr6 120041261 120041437 -29475600 + LTR81A LTR ERV1? 4 179 -1171 1 1500 25 51 0 0 chr6 120041519 120041558 -29475479 + AT_rich Low_complexity Low_complexity 1 39 0 1 1500 220 330 116 27 chr6 120041914 120042086 -29474951 + MIRb SINE MIR 34 237 -31 1 1500 902 248 9 57 chr6 120044177 120044404 -29472633 - B3 SINE B2 0 216 1 1 1500 347 241 42 67 chr6 120044628 120044748 -29472289 - L1MB5 LINE L1 -20 6488 6372 1 1500 379 229 88 8 chr6 120044816 120044965 -29472072 - L1MB5 LINE L1 -168 6181 6017 1 1500 673 269 160 35 chr6 120045055 120045286 -29471751 - B4 SINE B4 -22 270 11 1 1500 290 203 12 75 chr6 120045218 120045298 -29471739 - B3A SINE B2 -120 78 4 1 1500 207 184 0 58 chr6 120045350 120045402 -29471635 + CT-rich Low_complexity Low_complexity 1 49 0 1 1500 319 286 12 0 chr6 120045433 120045517 -29471520 - B1F SINE Alu -55 94 10 1 1500 372 43 0 0 chr6 120045665 120045711 -29471326 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1500 703 289 78 36 chr6 120045714 120046048 -29470989 - L1MB5 LINE L1 -1271 5050 4703 1 1500 259 217 32 32 chr6 120046138 120046200 -29470837 + ID4_ SINE ID 3 64 -19 1 1500 486 303 90 59 chr6 120046230 120046486 -29470551 + B4 SINE B4 2 265 -27 1 1500 320 0 25 0 chr6 120046488 120046528 -29470509 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1500 396 128 0 0 chr6 120046530 120046608 -29470429 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 1500 293 270 67 0 chr6 120046724 120046813 -29470224 - ID_B1 SINE B4 -1 223 129 1 1500 525 99 0 0 chr6 120046846 120046927 -29470110 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1500 593 279 61 4 chr6 120047060 120047290 -29469747 - L1MB5 LINE L1 -3141 3180 2938 1 1500 691 195 0 23 chr6 120047304 120047435 -29469602 - B1_Mur4 SINE Alu -1 149 22 1 1500 841 252 42 45 chr6 120047436 120047744 -29469293 - L1MB5 LINE L1 -3369 2952 2646 1 1500 721 299 68 0 chr6 120047807 120048041 -29468996 - B4 SINE B4 -42 250 1 1 1500 858 130 30 8 chr6 120048105 120048237 -29468800 + B1_Mus1 SINE Alu 2 136 -12 1 1500 362 227 49 25 chr6 120048416 120048538 -29468499 - L1MB5 LINE L1 -4726 1782 1658 1 1500 189 0 0 0 chr6 120049036 120049057 -29467980 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 1500 1184 70 0 0 chr6 120049073 120049216 -29467821 - B1_Mus1 SINE Alu -5 143 1 1 1500 1394 70 32 0 chr6 120049228 120049415 -29467622 - B2_Mm2 SINE B2 -1 194 2 1 1500 967 223 58 0 chr6 120049419 120049625 -29467412 - ID_B1 SINE B4 -3 221 4 1 1500 320 162 118 26 chr6 120049907 120049983 -29467054 - B3 SINE B2 0 216 134 1 1500 387 310 6 48 chr6 120050802 120050968 -29466069 - RSINE1 SINE B4 -3 162 4 1 1500 612 234 28 7 chr6 120050995 120051137 -29465900 - RSINE1 SINE B4 -10 155 11 1 1500 417 301 122 24 chr6 120051216 120051553 -29465484 - L1MB5 LINE L1 -5133 1375 1006 1 1500 317 231 39 0 chr6 120051699 120051777 -29465260 - ID4 SINE ID -2 81 1 1 1500 1625 286 131 39 chr6 120051777 120052695 -29464342 - L1MB5 LINE L1 -5502 1006 5 1 1500 817 153 20 27 chr6 120052762 120052910 -29464127 + B1_Mur4 SINE Alu 2 148 -2 1 1500 21 57 0 0 chr6 120053044 120053079 -29463958 + AT_rich Low_complexity Low_complexity 1 35 0 1 1500 845 252 173 7 chr6 120053085 120053355 -29463682 - MTD LTR MaLR 0 419 105 1 1500 1154 111 10 21 chr6 120053355 120053548 -29463489 + B2_Mm2 SINE B2 1 191 -4 1 1500 224 219 0 0 chr6 120053548 120053589 -29463448 + GA-rich Low_complexity Low_complexity 1 41 0 1 1500 300 209 126 54 chr6 120053589 120053700 -29463337 - MTD LTR MaLR -300 119 1 1 1500 241 121 69 0 chr6 120053864 120053922 -29463115 + T-rich Low_complexity Low_complexity 2 63 0 1 1500 249 159 0 0 chr6 120054155 120054199 -29462838 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1500 292 294 0 0 chr6 120054210 120054278 -29462759 - B4A SINE B4 -7 285 218 1 1500 569 245 135 11 chr6 120054281 120054476 -29462561 - B3A SINE B2 -3 213 9 1 1500 516 296 0 15 chr6 120054544 120054681 -29462356 - B4 SINE B4 -154 138 4 1 1500 324 0 0 0 chr6 120054697 120054733 -29462304 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1500 498 341 0 43 chr6 120055277 120055461 -29461576 + B3A SINE B2 1 176 -22 1 1500 694 183 42 0 chr6 120055486 120055628 -29461409 - B1_Mus1 SINE Alu 0 148 1 1 1500 294 29 0 0 chr6 120055635 120055670 -29461367 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1500 228 315 73 9 chr6 120055872 120055981 -29461056 - PB1D10 SINE Alu -1 116 1 1 1500 236 282 28 0 chr6 120056130 120056201 -29460836 - ID SINE ID -141 83 11 1 1500 2421 169 37 2 chr6 120056271 120056675 -29460362 - MTC LTR MaLR 0 421 4 1 1500 198 262 24 0 chr6 120056694 120056736 -29460301 - MIRc SINE MIR -182 86 44 1 1500 506 234 0 53 chr6 120056796 120056909 -29460128 + PB1D9 SINE Alu 1 107 -13 1 1500 270 0 0 0 chr6 120056909 120056939 -29460098 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1 1500 527 29 14 0 chr6 120056939 120057007 -29460030 + (GGA)n Simple_repeat Simple_repeat 3 72 0 1 1500 985 294 52 26 chr6 120057065 120057372 -29459665 + Tigger7 DNA MER2_type 24 338 -2153 1 1500 271 204 0 53 chr6 120057351 120057408 -29459629 + PB1D10 SINE Alu 53 106 -11 1 1500 475 242 72 8 chr6 120057446 120057571 -29459466 + ID_B1 SINE B4 92 224 0 1 1500 226 188 42 0 chr6 120057768 120057816 -29459221 + MER5A DNA MER1_type 134 183 -6 2 1500 243 0 0 0 chr6 120058991 120059018 -29458019 + (CAGGA)n Simple_repeat Simple_repeat 3 29 0 2 1500 198 0 0 0 chr6 120059698 120059720 -29457317 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1500 288 234 63 63 chr6 120059723 120059846 -29457191 + MIRb SINE MIR 61 190 -78 2 1500 201 298 18 0 chr6 120060035 120060092 -29456945 - MIRm SINE MIR -154 122 65 2 1500 435 241 26 44 chr6 120060169 120060282 -29456755 + PB1D7 SINE Alu 1 111 -9 2 1500 431 228 79 0 chr6 120060725 120060826 -29456211 - PB1D7 SINE Alu 0 120 12 2 1500 259 300 73 24 chr6 120061750 120061873 -29455164 + BC1_Mm scRNA scRNA 1 129 -23 2 1501 232 279 13 0 chr6 120062412 120062491 -29454546 + G-rich Low_complexity Low_complexity 1 80 0 2 1501 414 0 0 0 chr6 120062807 120062853 -29454184 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 2 1501 513 0 0 0 chr6 120063035 120063092 -29453945 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 2 1501 252 0 0 0 chr6 120063092 120063119 -29453918 + (TTTC)n Simple_repeat Simple_repeat 4 31 0 2 1501 1120 55 7 33 chr6 120063120 120063270 -29453767 - B1_Mus1 SINE Alu -1 147 2 2 1501 213 364 38 38 chr6 120063950 120064030 -29453007 + ID4 SINE ID 3 82 -1 2 1501 1037 177 49 26 chr6 120064056 120064273 -29452764 + B3 SINE B2 1 195 0 2 1501 668 188 20 53 chr6 120064451 120064603 -29452434 + B1_Mur3 SINE Alu 3 149 0 2 1501 585 76 0 0 chr6 120064603 120064682 -29452355 + (CAAAG)n Simple_repeat Simple_repeat 1 79 0 2 1501 321 227 0 0 chr6 120065416 120065526 -29451511 + (TG)n Simple_repeat Simple_repeat 2 111 0 2 1501 555 216 0 41 chr6 120065629 120065750 -29451287 + MIR SINE MIR 14 129 -133 2 1501 240 111 0 0 chr6 120066023 120066059 -29450978 + (TCC)n Simple_repeat Simple_repeat 1 36 0 2 1501 758 222 122 34 chr6 120066059 120066264 -29450773 - ID_B1 SINE B4 -1 223 1 2 1501 751 261 0 12 chr6 120066469 120066636 -29450401 - RSINE1 SINE B4 0 165 1 2 1501 523 307 0 28 chr6 120066841 120066985 -29450052 + B1F1 SINE Alu 9 148 -1 2 1501 443 241 67 103 chr6 120067759 120067785 -29449252 - RMER5 LTR ERV1 -20 514 491 2 1501 1368 79 11 0 chr6 120067785 120067962 -29449075 + B2_Mm1t SINE B2 3 181 -12 2 1501 234 0 0 0 chr6 120067962 120067988 -29449049 + (GAA)n Simple_repeat Simple_repeat 2 27 0 2 1501 443 241 67 103 chr6 120067988 120068152 -29448885 - RMER5 LTR ERV1 -44 490 331 2 1501 1140 108 12 6 chr6 120068152 120068310 -29448727 + B2_Mm2 SINE B2 2 161 -34 2 1501 183 42 0 0 chr6 120068310 120068334 -29448703 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 1501 225 132 0 0 chr6 120068425 120068463 -29448574 + (CATA)n Simple_repeat Simple_repeat 2 39 0 2 1501 1587 207 16 16 chr6 120068480 120068844 -29448193 - Lx4B LINE L1 -6 7052 6689 2 1501 3081 99 16 2 chr6 120068847 120069341 -29447696 + L1_Mur2 LINE L1 4645 5189 -691 2 1501 922 143 13 20 chr6 120069345 120069495 -29447542 - B1_Mur2 SINE Alu 0 149 1 2 1501 535 212 97 0 chr6 120069537 120069650 -29447387 + ID_B1 SINE B4 2 125 -99 2 1501 1304 277 72 150 chr6 120069885 120070374 -29446663 - L1M3 LINE L1 -1163 4977 4449 2 1501 538 286 28 14 chr6 120070374 120070516 -29446521 - B1_Mur1 SINE Alu -5 144 1 2 1501 1304 277 72 150 chr6 120070516 120070822 -29446215 - L1M3 LINE L1 -1163 4448 4116 2 1501 1241 194 96 177 chr6 120070822 120071229 -29445808 - ORR1D1 LTR MaLR 0 374 1 2 1501 1304 293 39 80 chr6 120071229 120071871 -29445166 - L1M3 LINE L1 -1996 4144 3562 2 1501 590 293 67 0 chr6 120071886 120072036 -29445001 - RSINE1 SINE B4 0 165 6 2 1501 646 212 13 20 chr6 120072042 120072191 -29444846 - B1F SINE Alu -1 148 1 2 1501 456 303 87 21 chr6 120072194 120072665 -29444372 - L1M3 LINE L1 -2298 3582 3094 2 1501 298 264 14 0 chr6 120072712 120072784 -29444253 - PB1D10 SINE Alu -1 116 44 2 1501 602 26 13 0 chr6 120072806 120072882 -29444155 + (TC)n Simple_repeat Simple_repeat 1 77 0 2 1501 828 142 31 8 chr6 120072906 120073034 -29444003 - B1_Mm SINE Alu -15 132 2 2 1501 376 358 23 8 chr6 120073054 120073313 -29443724 - L1M3 LINE L1 -3120 3023 2761 2 1501 363 23 0 0 chr6 120073326 120073370 -29443667 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1501 416 290 30 0 chr6 120073375 120073475 -29443562 - RSINE1 SINE B4 -59 106 4 2 1501 394 247 57 110 chr6 120073476 120073582 -29443455 - L1_Mur2 LINE L1 -3130 2747 2642 2 1501 915 172 14 0 chr6 120073582 120073727 -29443310 + B1_Mus1 SINE Alu 2 148 0 2 1501 394 247 57 110 chr6 120073727 120073829 -29443208 - L1_Mur2 LINE L1 -3236 2641 2550 2 1501 644 254 14 7 chr6 120073870 120074009 -29443028 - RSINE1 SINE B4 -24 141 2 2 1501 380 314 87 28 chr6 120074009 120074403 -29442634 - L1_Mur2 LINE L1 -3288 2589 2192 2 1501 1705 31 0 0 chr6 120074403 120074595 -29442442 - B2_Mm1a SINE B2 0 193 2 2 1501 341 332 85 46 chr6 120074595 120074703 -29442334 - L1_Mur2 LINE L1 -3689 2191 2078 2 1501 390 309 101 61 chr6 120075044 120075192 -29441845 - ID_B1 SINE B4 -67 157 4 2 1501 577 231 0 11 chr6 120075266 120075396 -29441641 - B1F1 SINE Alu -17 130 4 2 1501 297 273 50 57 chr6 120075279 120075419 -29441618 - B4A SINE B4 -83 209 71 2 1501 300 256 70 0 chr6 120075482 120075568 -29441469 - L1M4 LINE L1 -1210 4936 4845 2 1501 1094 175 18 97 chr6 120075574 120075609 -29441428 + B3 SINE B2 7 41 -175 2 1501 1308 69 15 69 chr6 120075609 120075812 -29441225 + B2_Mm1a SINE B2 2 193 0 2 1501 1094 175 18 97 chr6 120075812 120076004 -29441033 + B3 SINE B2 42 216 0 2 1501 974 107 50 0 chr6 120076747 120076887 -29440150 + B1_Mus2 SINE Alu 1 147 0 2 1501 258 105 0 0 chr6 120076887 120076925 -29440112 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1501 500 285 36 7 chr6 120076991 120077129 -29439908 - ID_B1 SINE B4 0 224 83 2 1501 1190 102 6 0 chr6 120077253 120077420 -29439617 - B2_Mm2 SINE B2 -27 168 1 2 1501 3098 9 0 0 chr6 120077621 120077958 -29439079 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1501 57157 18 17 4 chr6 120077958 120084349 -29432688 - IAPEz-int LTR ERVK 0 6481 8 2 1501 3098 9 0 0 chr6 120084349 120084686 -29432351 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 1501 791 217 3 0 chr6 120085849 120086432 -29430605 + (CA)n Simple_repeat Simple_repeat 1 585 0 2 1501 682 178 4 34 chr6 120086410 120086649 -29430388 + (CATA)n Simple_repeat Simple_repeat 1 231 0 2 1501 204 231 0 0 chr6 120086741 120086793 -29430244 + T-rich Low_complexity Low_complexity 1 52 0 2 1501 267 241 47 81 chr6 120087024 120087110 -29429927 - PB1D10 SINE Alu 0 117 35 2 1501 220 345 49 43 chr6 120087628 120087813 -29429224 + MIR SINE MIR 70 255 -7 2 1501 1133 79 0 0 chr6 120087983 120088123 -29428914 + B1_Mus1 SINE Alu 2 141 -7 2 1501 279 0 0 0 chr6 120088123 120088154 -29428883 + (CAAAC)n Simple_repeat Simple_repeat 2 32 0 2 1501 315 49 0 0 chr6 120088156 120088197 -29428840 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1501 439 294 11 81 chr6 120088286 120088367 -29428670 - RSINE1 SINE B4 -1 164 89 2 1501 600 200 34 88 chr6 120088367 120088515 -29428522 - B1_Mur1 SINE Alu -5 144 5 2 1501 439 294 11 81 chr6 120088515 120088607 -29428430 - RSINE1 SINE B4 -77 88 3 2 1501 548 305 0 0 chr6 120088616 120088747 -29428290 - ID_B1 SINE B4 -10 214 84 2 1501 275 278 0 53 chr6 120089484 120089496 -29427541 + B4A SINE B4 78 85 -207 2 1501 507 238 0 0 chr6 120089496 120089597 -29427440 + B1F SINE Alu 1 101 -48 2 1501 407 19 19 0 chr6 120089662 120089714 -29427323 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1501 602 154 138 0 chr6 120090144 120090274 -29426763 + B1_Mus1 SINE Alu 1 148 0 2 1501 847 96 0 22 chr6 120090276 120090414 -29426623 + (GAAAA)n Simple_repeat Simple_repeat 2 136 0 2 1501 361 276 63 31 chr6 120090537 120090698 -29426339 - MIR SINE MIR -92 170 2 2 1501 975 90 116 0 chr6 120091079 120091234 -29425803 - B2_Mm2 SINE B2 -3 192 20 2 1501 215 100 0 48 chr6 120091234 120091276 -29425761 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 2 1501 1152 42 0 14 chr6 120091278 120091423 -29425614 - B1_Mus1 SINE Alu 0 148 6 2 1501 451 230 30 98 chr6 120091315 120091479 -29425558 - MT2B LTR ERVL -337 264 112 2 1501 1242 177 5 18 chr6 120091480 120091704 -29425333 + URR1B DNA MER1_type 5 225 0 2 1501 325 303 0 0 chr6 120092154 120092230 -29424807 - ID4_ SINE ID -1 82 7 2 1501 354 263 91 0 chr6 120092762 120092861 -29424176 + PB1D10 SINE Alu 1 108 -9 2 1501 258 204 0 36 chr6 120092995 120093051 -29423986 - B4 SINE B4 -18 274 221 2 1501 5021 28 0 3 chr6 120093051 120093661 -29423376 - L1Md_F2 LINE L1 0 6582 5995 2 1501 955 28 0 0 chr6 120093661 120093768 -29423269 - U6 snRNA snRNA 0 107 1 2 1501 29 0 0 0 chr6 120093783 120093812 -29423225 + AT_rich Low_complexity Low_complexity 1 29 0 2 1501 1130 62 7 7 chr6 120093812 120093959 -29423078 - B1_Mus1 SINE Alu 0 148 2 2 1501 213 179 26 0 chr6 120093959 120093998 -29423039 - B3A SINE B2 -157 41 2 2 1501 896 280 27 0 chr6 120093998 120094222 -29422815 - B4A SINE B4 -62 230 1 2 1501 940 258 5 45 chr6 120094320 120094543 -29422494 - B3 SINE B2 -2 214 1 2 1501 873 129 0 0 chr6 120094558 120094697 -29422340 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 2 1501 813 129 0 0 chr6 120094697 120094813 -29422224 - B1_Mus2 SINE Alu -9 138 23 2 1501 223 359 81 31 chr6 120094827 120094988 -29422049 + L2c LINE L2 2976 3144 -243 2 1501 22 56 0 0 chr6 120095197 120095233 -29421804 + AT_rich Low_complexity Low_complexity 1 36 0 2 1501 244 200 60 0 chr6 120095236 120095286 -29421751 + BC1_Mm scRNA scRNA 2 54 -98 2 1501 235 368 0 19 chr6 120095353 120095461 -29421576 + BC1_Mm scRNA scRNA 2 107 -45 2 1501 295 343 112 62 chr6 120096923 120097147 -29419890 - Charlie23a DNA MER1_type -49 290 56 2 1501 432 211 110 0 chr6 120097259 120097368 -29419669 - ID_B1 SINE B4 0 224 104 2 1501 263 341 122 0 chr6 120097718 120097841 -29419196 - MIR SINE MIR -67 195 58 2 1501 189 107 0 0 chr6 120097870 120097898 -29419139 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1501 1296 27 0 0 chr6 120097898 120098045 -29418992 - B1_Mus2 SINE Alu 0 147 1 2 1501 643 207 37 0 chr6 120098224 120098359 -29418678 + B1_Mur2 SINE Alu 9 148 -1 3 1501 189 171 0 0 chr6 120098362 120098397 -29418640 + A-rich Low_complexity Low_complexity 1 35 0 3 1501 432 0 0 0 chr6 120098640 120098688 -29418349 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1501 615 117 32 0 chr6 120099509 120099603 -29417434 - URR1A DNA MER1_type -85 141 45 3 1501 1052 209 24 9 chr6 120101239 120101452 -29415585 + B3 SINE B2 1 216 0 3 1501 781 248 0 75 chr6 120101511 120101725 -29415312 - B3A SINE B2 0 198 1 3 1501 326 312 176 27 chr6 120101785 120102006 -29415031 - ORR1E LTR MaLR -105 254 1 3 1501 198 0 0 0 chr6 120102009 120102031 -29415006 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1501 259 185 0 18 chr6 120102343 120102398 -29414639 - ID_B1 SINE B4 0 224 171 3 1501 1260 94 56 0 chr6 120102431 120102611 -29414426 + B2_Mm1t SINE B2 2 191 -2 3 1501 1302 20 0 0 chr6 120102995 120103141 -29413896 + B1_Mm SINE Alu 2 147 0 3 1501 207 0 0 0 chr6 120103141 120103164 -29413873 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1501 306 0 0 0 chr6 120103465 120103499 -29413538 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1501 295 239 87 0 chr6 120104266 120104358 -29412679 + MIRc SINE MIR 22 121 -147 3 1501 1264 124 11 0 chr6 120104528 120104714 -29412323 - B2_Mm1t SINE B2 -4 189 2 3 1501 527 193 133 8 chr6 120104746 120104866 -29412171 + B1_Mur4 SINE Alu 10 144 -6 3 1501 240 282 42 83 chr6 120105226 120105241 -29411796 + MT2B LTR ERVL 126 237 -361 3 1501 303 269 39 88 chr6 120105241 120105343 -29411694 + B4A SINE B4 71 167 -125 3 1501 561 238 0 0 chr6 120105271 120105372 -29411665 + PB1D10 SINE Alu 8 108 -9 3 1501 1200 111 0 0 chr6 120105376 120105556 -29411481 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1501 239 309 49 49 chr6 120106103 120106205 -29410832 + B4 SINE B4 80 181 -111 3 1501 412 250 11 14 chr6 120106114 120106212 -29410825 + B1F1 SINE Alu 5 107 -20 3 1501 482 116 52 39 chr6 120106218 120106371 -29410666 + GA-rich Low_complexity Low_complexity 4 158 0 3 1501 242 326 22 0 chr6 120106581 120106670 -29410367 + BC1_Mm scRNA scRNA 13 103 -49 3 1501 229 279 51 0 chr6 120106681 120106760 -29410277 + ID2 SINE ID 1 83 0 3 1501 311 182 54 54 chr6 120107002 120107095 -29409942 - BC1_Mm scRNA scRNA -59 93 1 3 1501 256 319 108 24 chr6 120107055 120107270 -29409767 - ZP3AR Satellite Satellite -24 233 1 3 1501 398 241 97 9 chr6 120107495 120107608 -29409429 - PB1 SINE Alu -2 125 3 3 1501 204 293 0 0 chr6 120107769 120107810 -29409227 + MIR SINE MIR 30 70 -192 3 1501 203 315 88 22 chr6 120108153 120108244 -29408793 + MIR SINE MIR 108 204 -58 3 1501 1194 43 23 58 chr6 120108249 120108423 -29408614 + B2_Mm2 SINE B2 1 168 -27 3 1501 266 369 0 0 chr6 120108431 120108515 -29408522 + RSINE1 SINE B4 1 84 -81 3 1501 561 198 59 18 chr6 120108440 120108605 -29408432 + B3 SINE B2 9 187 -8 3 1501 414 0 0 0 chr6 120108648 120108694 -29408343 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1501 221 256 0 0 chr6 120108798 120108841 -29408196 - PB1 SINE Alu -64 63 21 3 1501 495 145 0 0 chr6 120109037 120109120 -29407917 + (TCC)n Simple_repeat Simple_repeat 2 84 0 3 1501 398 274 63 0 chr6 120109823 120109924 -29407113 - ID_B1 SINE B4 -116 176 63 3 1501 1090 193 14 10 chr6 120110044 120110253 -29406784 + B3 SINE B2 1 210 -6 3 1501 237 250 78 0 chr6 120110384 120110448 -29406589 - MER5A1 DNA MER1_type -59 107 39 3 1501 387 0 0 0 chr6 120110648 120110691 -29406346 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1501 401 245 206 0 chr6 120110691 120110793 -29406244 - RSINE1 SINE B4 -41 124 2 3 1501 1101 123 176 5 chr6 120111138 120111326 -29405711 + URR1A DNA MER1_type 5 224 -2 3 1501 246 342 51 57 chr6 120111346 120111662 -29405375 - HAL1 LINE L1 -1054 1453 1140 3 1501 390 282 0 49 chr6 120111670 120111793 -29405244 - PB1D10 SINE Alu 0 117 1 3 1501 609 263 8 0 chr6 120112030 120112163 -29404874 - ID_B1 SINE B4 -6 218 85 3 1501 602 214 0 40 chr6 120112267 120112418 -29404619 + B1F SINE Alu 1 145 -4 3 1501 745 190 41 27 chr6 120112425 120112571 -29404466 + B1_Mur4 SINE Alu 1 148 -2 3 1501 1328 97 0 5 chr6 120112577 120112773 -29404264 + B2_Mm2 SINE B2 1 195 0 3 1501 600 123 0 0 chr6 120112827 120112941 -29404096 + (GA)n Simple_repeat Simple_repeat 1 114 0 3 1501 479 198 28 0 chr6 120112993 120113099 -29403938 + L1MB8 LINE L1 6063 6171 -7 3 1501 180 0 0 0 chr6 120113380 120113400 -29403637 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 3 1501 374 309 9 128 chr6 120113400 120113619 -29403418 + B3 SINE B2 19 211 -5 3 1501 948 229 48 10 chr6 120113641 120113848 -29403189 + B3 SINE B2 1 215 -1 3 1501 1306 73 11 0 chr6 120114238 120114415 -29402622 + B2_Mm1a SINE B2 1 179 -14 3 1501 270 74 0 18 chr6 120114469 120114524 -29402513 + B2_Mm2 SINE B2 138 191 -4 3 1501 518 252 16 8 chr6 120114537 120114661 -29402376 + ID_B1 SINE B4 98 222 -2 3 1501 1336 76 48 5 chr6 120115443 120115629 -29401408 - B2_Mm2 SINE B2 0 195 2 3 1501 1319 62 0 85 chr6 120115652 120115702 -29401335 - B2_Mm1a SINE B2 0 193 161 3 1501 276 77 0 0 chr6 120115702 120115741 -29401296 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 3 1501 1319 62 0 85 chr6 120115741 120115901 -29401136 - B2_Mm1a SINE B2 -33 160 1 3 1501 257 252 31 23 chr6 120115961 120116091 -29400946 - L1ME4a LINE L1 -10 6114 5984 3 1501 241 289 153 23 chr6 120116344 120116366 -29400671 + B1F1 SINE Alu 1 144 -1 3 1501 363 276 38 0 chr6 120116366 120116471 -29400566 + ID_B1 SINE B4 114 222 -2 3 1501 442 234 56 0 chr6 120116573 120116680 -29400357 - B1F SINE Alu -36 113 1 3 1501 1363 90 0 5 chr6 120116796 120116985 -29400052 + B2_Mm2 SINE B2 1 188 -7 3 1501 235 299 71 20 chr6 120118204 120118303 -29398734 + BC1_Mm scRNA scRNA 1 104 -48 3 1501 290 260 190 0 chr6 120118488 120118583 -29398454 - B1F1 SINE Alu -9 108 1 3 1501 1210 115 21 10 chr6 120119026 120119219 -29397818 + B2_Mm2 SINE B2 1 195 0 3 1501 544 230 24 0 chr6 120119741 120119867 -29397170 + B1F SINE Alu 20 148 -1 3 1501 233 146 89 18 chr6 120119995 120120051 -29396986 - MTEa LTR MaLR 0 379 320 3 1501 404 247 190 6 chr6 120120232 120120395 -29396642 + Lx8 LINE L1 6973 7165 -308 3 1501 361 236 32 11 chr6 120120406 120120500 -29396537 + B1F SINE Alu 46 141 -8 3 1501 521 317 23 40 chr6 120120797 120120971 -29396066 - ID_B1 SINE B4 -51 173 3 3 1501 340 253 10 52 chr6 120121098 120121194 -29395843 - RSINE1 SINE B4 -72 93 2 3 1501 21 36 0 0 chr6 120121232 120121260 -29395777 + AT_rich Low_complexity Low_complexity 1 28 0 3 1501 1204 48 0 0 chr6 120121267 120121414 -29395623 + B1_Mus2 SINE Alu 1 147 0 3 1501 363 223 11 12 chr6 120121461 120121552 -29395485 - B1F1 SINE Alu -49 100 10 3 1501 393 238 95 0 chr6 120122160 120122265 -29394772 + PB1 SINE Alu 10 124 -3 3 1501 652 286 95 44 chr6 120122269 120122543 -29394494 - MLT1F LTR MaLR -220 328 41 3 1501 250 208 101 25 chr6 120122750 120122829 -29394208 + L1MD3 LINE L1 7350 7434 -561 3 1501 598 242 8 0 chr6 120122916 120123040 -29393997 + ID_B1 SINE B4 91 215 -9 3 1501 1051 113 11 11 chr6 120123040 120123219 -29393818 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 3 1501 234 347 52 65 chr6 120123219 120123248 -29393789 + B4A SINE B4 219 246 -46 3 1501 666 138 0 0 chr6 120123250 120123359 -29393678 + (GAAA)n Simple_repeat Simple_repeat 1 109 0 3 1501 464 279 0 0 chr6 120123575 120123686 -29393351 - PB1D10 SINE Alu -6 111 1 3 1501 278 295 92 37 chr6 120123992 120124101 -29392936 + PB1D10 SINE Alu 1 115 -2 3 1501 285 236 14 0 chr6 120124101 120124173 -29392864 + ID2 SINE ID 3 75 -8 3 1501 1230 86 23 0 chr6 120125245 120125420 -29391617 + B2_Mm2 SINE B2 3 181 -14 3 1501 396 55 0 22 chr6 120125433 120125499 -29391538 + B2_Mm2 SINE B2 47 109 -107 3 1501 29 47 0 0 chr6 120125511 120125554 -29391483 + AT_rich Low_complexity Low_complexity 1 43 0 3 1501 419 259 57 14 chr6 120126032 120126173 -29390864 + B1F1 SINE Alu 1 147 -2 3 1501 342 0 0 0 chr6 120126174 120126212 -29390825 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1501 492 99 49 0 chr6 120126549 120126630 -29390407 - B1_Mus2 SINE Alu -1 146 62 3 1501 1039 62 14 0 chr6 120126804 120126949 -29390088 - B1_Mm SINE Alu 0 147 1 3 1501 242 283 0 62 chr6 120126976 120127027 -29390010 + B1F SINE Alu 3 53 -96 3 1501 378 61 0 0 chr6 120127027 120127076 -29389961 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1501 242 283 0 62 chr6 120127076 120127088 -29389949 + B1F SINE Alu 54 62 -87 3 1501 625 268 58 0 chr6 120127094 120127232 -29389805 - RSINE1 SINE B4 -17 148 3 3 1501 415 276 76 54 chr6 120127455 120127495 -29389542 - B2_Mm2 SINE B2 -6 189 152 3 1501 306 87 0 0 chr6 120127495 120127541 -29389496 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1501 498 256 34 9 chr6 120127541 120127684 -29389353 - B3A SINE B2 -44 151 2 3 1501 399 125 0 0 chr6 120128031 120128103 -29388934 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 1501 663 298 53 57 chr6 120128106 120128369 -29388668 - B4A SINE B4 -22 270 9 3 1501 355 311 0 103 chr6 120128488 120128624 -29388413 + PB1 SINE Alu 3 124 -3 3 1501 496 192 8 31 chr6 120128653 120128775 -29388262 + B1F SINE Alu 1 148 -1 4 1501 818 95 7 68 chr6 120128984 120129131 -29387906 - B1_Mur4 SINE Alu -1 149 12 4 1501 246 244 111 0 chr6 120129390 120129480 -29387557 + PB1D10 SINE Alu 18 117 0 4 1501 468 35 0 0 chr6 120130204 120130262 -29386775 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1501 200 333 141 0 chr6 120130716 120130815 -29386222 + MIR3 SINE MIR 43 155 -53 4 1501 395 296 9 9 chr6 120131283 120131392 -29385645 - PB1D10 SINE Alu -6 111 3 4 1501 698 192 0 0 chr6 120131483 120131613 -29385424 - B3 SINE B2 -86 130 1 4 1501 408 302 0 31 chr6 120131658 120131788 -29385249 + RSINE1 SINE B4 4 129 -36 4 1501 839 128 10 21 chr6 120131882 120132040 -29384997 + B2_Mm2 SINE B2 1 166 -27 4 1501 252 59 0 0 chr6 120132053 120132087 -29384950 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 4 1501 831 225 58 21 chr6 120132386 120132577 -29384460 + MTEa LTR MaLR 182 379 0 4 1501 218 200 0 0 chr6 120132691 120132736 -29384301 + B3A SINE B2 1 45 -153 4 1501 1213 27 0 0 chr6 120132747 120132894 -29384143 - B1_Mus2 SINE Alu 0 147 1 4 1501 861 229 11 11 chr6 120132898 120133088 -29383949 + B3 SINE B2 23 212 -4 4 1501 1333 105 16 0 chr6 120133092 120133283 -29383754 + B2_Mm2 SINE B2 2 195 0 4 1501 1298 74 15 35 chr6 120133302 120133499 -29383538 + B2_Mm2 SINE B2 1 193 -2 4 1501 309 109 0 0 chr6 120134198 120134244 -29382793 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 4 1501 337 312 54 0 chr6 120134354 120134466 -29382571 + MIRb SINE MIR 3 120 -148 4 1501 648 56 22 0 chr6 120134566 120134656 -29382381 + B1_Mur3 SINE Alu 45 136 -13 4 1501 295 260 14 14 chr6 120134743 120134817 -29382220 + RSINE1 SINE B4 8 81 -84 4 1501 866 189 0 0 chr6 120134824 120134972 -29382065 + B3 SINE B2 41 188 -28 4 1501 417 86 0 0 chr6 120134974 120135032 -29382005 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1501 221 211 38 101 chr6 120135150 120135229 -29381808 + B1F1 SINE Alu 17 90 -59 4 1501 404 106 206 31 chr6 120135168 120135265 -29381772 + ID_B1 SINE B4 111 224 0 4 1501 201 39 0 0 chr6 120135357 120135383 -29381654 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1501 1079 56 21 0 chr6 120135383 120135525 -29381512 - B1_Mm SINE Alu -2 145 1 4 1501 201 211 0 0 chr6 120136907 120136959 -29380078 + CT-rich Low_complexity Low_complexity 3 54 0 4 1501 540 226 55 24 chr6 120137289 120137416 -29379621 - B1F SINE Alu -6 143 13 4 1501 186 333 0 45 chr6 120137469 120137557 -29379480 + MIR SINE MIR 46 129 -79 4 1501 216 159 45 0 chr6 120139238 120139282 -29377755 + B1F SINE Alu 95 140 -9 4 1501 263 203 101 0 chr6 120140342 120140424 -29376613 - PB1D10 SINE Alu -20 97 7 4 1501 405 0 0 0 chr6 120141425 120141470 -29375567 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1501 863 93 306 6 chr6 120142658 120142831 -29374206 + URR1A DNA MER1_type 2 226 0 4 1501 183 162 0 0 chr6 120142870 120142907 -29374130 + G-rich Low_complexity Low_complexity 1 37 0 4 1501 369 288 26 0 chr6 120143099 120143209 -29373828 - PB1D10 SINE Alu -3 124 3 4 1501 414 0 0 0 chr6 120143619 120143665 -29373372 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1501 438 252 105 15 chr6 120144130 120144263 -29372774 - B3 SINE B2 -70 146 2 4 1501 507 218 119 15 chr6 120144857 120145026 -29372011 - B4A SINE B4 -9 283 101 4 1501 279 0 0 0 chr6 120145422 120145453 -29371584 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1501 315 273 99 20 chr6 120145611 120145712 -29371325 - ID_B1 SINE B4 -104 120 12 4 1501 250 299 15 0 chr6 120145978 120146045 -29370992 + PB1D10 SINE Alu 42 109 -8 4 1501 359 326 34 27 chr6 120146236 120146384 -29370653 - RSINE1 SINE B4 -15 150 2 4 1501 371 325 26 0 chr6 120146384 120146492 -29370545 - B1F1 SINE Alu -38 111 1 4 1501 200 111 28 0 chr6 120146657 120146693 -29370344 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 4 1501 341 282 0 0 chr6 120146792 120146863 -29370174 - RSINE1 SINE B4 -92 73 3 4 1501 384 178 36 98 chr6 120146868 120146980 -29370057 - PB1D10 SINE Alu -8 109 5 4 1501 787 177 7 20 chr6 120147142 120147292 -29369745 + B1_Mus1 SINE Alu 1 148 0 4 1501 30 0 0 0 chr6 120147299 120147329 -29369708 + AT_rich Low_complexity Low_complexity 1 30 0 4 1501 257 279 25 25 chr6 120147329 120147410 -29369627 - ID4 SINE ID 0 83 3 4 1501 956 157 31 31 chr6 120150594 120150785 -29366252 + B2_Mm2 SINE B2 1 191 -4 4 1501 734 203 215 0 chr6 120150785 120150962 -29366075 - B3 SINE B2 0 216 2 4 1501 253 262 35 35 chr6 120151055 120151142 -29365895 + RSINE1 SINE B4 75 161 -4 4 1501 774 184 13 45 chr6 120151164 120151318 -29365719 - B1_Mur1 SINE Alu 0 149 1 4 1501 1069 191 19 19 chr6 120151356 120151564 -29365473 + B3 SINE B2 6 213 -3 4 1501 263 270 27 0 chr6 120151663 120151737 -29365300 - PB1D10 SINE Alu -26 91 16 4 1501 417 20 0 0 chr6 120154235 120154285 -29362752 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1501 376 274 0 45 chr6 120154405 120154516 -29362521 - PB1D10 SINE Alu -1 116 11 4 1501 399 263 128 28 chr6 120154433 120154574 -29362463 - ID_B1 SINE B4 -54 170 16 4 1501 439 202 0 48 chr6 120155476 120155580 -29361457 - PB1D10 SINE Alu -18 99 1 4 1501 270 267 93 0 chr6 120155726 120155801 -29361236 + MTEa LTR MaLR 296 377 -2 4 1501 463 213 87 0 chr6 120157452 120157579 -29359458 - B1F SINE Alu -11 138 1 4 1501 259 285 196 7 chr6 120157707 120157845 -29359192 + ORR1E LTR MaLR 22 185 -174 4 1501 306 308 0 0 chr6 120157944 120158022 -29359015 + ID4 SINE ID 2 79 -4 4 1501 846 238 35 5 chr6 120158062 120158265 -29358772 + MTD LTR MaLR 1 209 -210 4 1501 369 143 93 8 chr6 120158267 120158360 -29358677 + B3 SINE B2 2 113 -82 4 1501 814 140 9 152 chr6 120158377 120158587 -29358450 + B2_Mm2 SINE B2 2 181 -14 4 1501 410 259 47 3 chr6 120158627 120158776 -29358261 + MTD LTR MaLR 226 419 0 4 1501 241 348 29 20 chr6 120160489 120160628 -29356409 + MIRc SINE MIR 39 178 -30 4 1501 314 184 115 10 chr6 120160700 120160769 -29356268 + L1_Mur3 LINE L1 2078 2152 -3728 4 1501 306 0 0 0 chr6 120160769 120160803 -29356234 + (TAA)n Simple_repeat Simple_repeat 2 35 0 4 1501 314 184 115 10 chr6 120160803 120160837 -29356200 + L1_Mur3 LINE L1 2153 2191 -3689 4 1501 370 292 115 60 chr6 120160837 120161019 -29356018 + B3A SINE B2 1 192 -6 4 1501 813 221 80 0 chr6 120161023 120161222 -29355815 + B3 SINE B2 1 215 -1 4 1501 663 202 20 0 chr6 120161232 120161365 -29355672 - B1_Mus2 SINE Alu 0 147 10 4 1501 467 300 90 4 chr6 120161380 120161624 -29355413 + L1_Mur3 LINE L1 2188 2452 -3428 4 1501 492 279 78 57 chr6 120161647 120161981 -29355056 + L1MA5 LINE L1 4795 5135 -1008 4 1501 255 182 43 57 chr6 120162093 120162163 -29354874 - B2_Mm2 SINE B2 -125 70 2 4 1501 433 248 17 50 chr6 120162268 120162387 -29354650 + B1F2 SINE Alu 14 128 -21 4 1501 271 233 33 0 chr6 120162389 120162449 -29354588 + B4A SINE B4 82 143 -149 4 1501 360 0 0 0 chr6 120162450 120162490 -29354547 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1501 1065 188 24 15 chr6 120162502 120162707 -29354330 + B3 SINE B2 4 210 -6 4 1501 1315 290 107 16 chr6 120162711 120162733 -29354304 + L1MA5 LINE L1 5346 5368 -932 4 1501 1295 97 16 0 chr6 120162733 120162919 -29354118 + B2_Mm2 SINE B2 1 189 -6 4 1501 1315 290 107 16 chr6 120162919 120163336 -29353701 + L1MA5 LINE L1 5369 5831 -469 4 1501 1250 52 69 6 chr6 120163336 120163494 -29353543 + B2_Mm1a SINE B2 2 160 -33 4 1501 215 0 0 62 chr6 120163494 120163526 -29353511 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 4 1501 1250 52 69 6 chr6 120163526 120163540 -29353497 + B2_Mm1a SINE B2 161 185 -8 4 1501 1315 290 107 16 chr6 120163540 120163733 -29353304 + L1MA5 LINE L1 5832 6037 -263 4 1501 450 193 96 48 chr6 120163831 120163956 -29353081 + B1F1 SINE Alu 14 144 -5 4 1501 282 56 0 0 chr6 120164091 120164127 -29352910 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 4 1501 1446 67 0 5 chr6 120164127 120164322 -29352715 - B2_Mm2 SINE B2 -1 194 1 4 1501 23 0 0 0 chr6 120164410 120164433 -29352604 + AT_rich Low_complexity Low_complexity 1 23 0 4 1501 186 167 0 0 chr6 120164974 120165010 -29352027 + CT-rich Low_complexity Low_complexity 1 36 0 4 1501 518 256 15 44 chr6 120165711 120165846 -29351191 + B1F2 SINE Alu 11 141 -8 4 1501 261 0 0 0 chr6 120165878 120165907 -29351130 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 4 1501 288 192 178 0 chr6 120167951 120168024 -29349013 - PB1D10 SINE Alu 0 117 32 4 1501 287 289 53 0 chr6 120168120 120168196 -29348841 + BC1_Mm scRNA scRNA 4 83 -69 4 1501 911 138 36 0 chr6 120168240 120168378 -29348659 + B1_Mur4 SINE Alu 2 144 -6 4 1501 212 0 0 35 chr6 120168384 120168413 -29348624 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1501 189 0 0 0 chr6 120168645 120168666 -29348371 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1501 1160 56 14 0 chr6 120168666 120168810 -29348227 - B1_Mus1 SINE Alu 0 148 3 4 1501 242 405 0 12 chr6 120169220 120169305 -29347732 - MER91B DNA Tip100 -5 185 102 4 1501 703 277 180 51 chr6 120169663 120170013 -29347024 + RCHARR1 DNA MER1_type 1 395 -579 4 1501 1181 55 14 0 chr6 120170037 120170182 -29346855 + B1_Mus1 SINE Alu 2 148 0 4 1501 536 200 70 157 chr6 120170209 120170381 -29346656 + RCHARR1 DNA MER1_type 518 674 -300 4 1501 365 350 59 108 chr6 120170381 120170583 -29346454 + B4A SINE B4 1 199 -93 4 1501 1310 86 6 11 chr6 120170583 120170759 -29346278 - B2_Mm1t SINE B2 -14 179 5 4 1501 365 350 59 108 chr6 120170759 120170863 -29346174 + B4A SINE B4 200 291 -1 4 1501 237 250 83 0 chr6 120170868 120170952 -29346085 + RCHARR1 DNA MER1_type 663 753 -221 4 1501 538 269 41 67 chr6 120170935 120170960 -29346077 - B3 SINE B2 0 216 194 4 1501 784 196 0 51 chr6 120170960 120171116 -29345921 - B1_Mur4 SINE Alu -1 149 2 4 1501 538 269 41 67 chr6 120171116 120171285 -29345752 - B3 SINE B2 -23 193 27 4 1501 363 221 248 3 chr6 120171303 120171400 -29345637 - B3 SINE B2 -5 211 101 5 1501 853 247 84 13 chr6 120171411 120171649 -29345388 + RCHARR1 DNA MER1_type 720 974 0 4 1501 1026 105 7 7 chr6 120171744 120171888 -29345149 - B1_Mur4 SINE Alu -1 149 6 5 1501 299 326 54 0 chr6 120172671 120172763 -29344274 - MIR SINE MIR -142 120 24 5 1501 265 278 120 17 chr6 120173081 120173198 -29343839 + MIR SINE MIR 19 147 -61 5 1501 891 253 5 30 chr6 120173212 120173412 -29343625 + B3 SINE B2 2 196 -20 5 1501 182 222 19 0 chr6 120173696 120173750 -29343287 + GA-rich Low_complexity Low_complexity 1 55 0 5 1501 296 285 91 42 chr6 120175270 120175413 -29341624 + ORR1E LTR MaLR 46 195 -164 5 1501 369 93 0 0 chr6 120175604 120175658 -29341379 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1501 1315 65 0 6 chr6 120176718 120176887 -29340150 - B2_Mm2 SINE B2 -27 168 1 5 1501 185 242 145 0 chr6 120176954 120177016 -29340021 - MIR SINE MIR -63 145 75 5 1501 1535 47 0 20 chr6 120177727 120177923 -29339114 + B2_Mm1a SINE B2 2 193 0 5 1501 1194 42 21 0 chr6 120177938 120178081 -29338956 + B1_Mm SINE Alu 2 147 0 5 1501 198 0 0 0 chr6 120178081 120178103 -29338934 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1501 33 25 0 0 chr6 120178143 120178183 -29338854 + AT_rich Low_complexity Low_complexity 1 40 0 5 1501 207 0 0 0 chr6 120178210 120178233 -29338804 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1501 865 184 0 34 chr6 120178233 120178379 -29338658 - B1_Mur4 SINE Alu -8 142 2 5 1501 1225 71 88 6 chr6 120178916 120179087 -29337950 - B2_Mm1t SINE B2 -8 185 1 5 1501 824 150 53 0 chr6 120179115 120179248 -29337789 + B1_Mur4 SINE Alu 2 141 -9 5 1501 381 22 0 0 chr6 120179248 120179294 -29337743 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 5 1501 393 197 66 0 chr6 120179325 120179401 -29337636 + PB1D9 SINE Alu 5 85 -35 5 1501 570 237 0 0 chr6 120179448 120179545 -29337492 + PB1D10 SINE Alu 14 110 -7 5 1501 486 0 0 0 chr6 120179546 120179600 -29337437 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1501 587 255 0 54 chr6 120179611 120179760 -29337277 + ID_B1 SINE B4 84 224 0 5 1501 231 71 64 106 chr6 120179718 120179765 -29337272 + PB1D7 SINE Alu 76 120 0 5 1501 183 129 0 0 chr6 120179772 120179803 -29337234 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1501 512 167 118 0 chr6 120180482 120180584 -29336453 + MER103 DNA DNA 4 117 -49 5 1501 187 261 15 30 chr6 120180750 120180817 -29336220 + MIRc SINE MIR 96 161 -107 5 1501 198 133 0 0 chr6 120181216 120181246 -29335791 + L2b LINE L2 3333 3362 -13 5 1501 752 166 233 0 chr6 120181294 120181446 -29335591 + B3 SINE B2 1 190 -26 5 1501 432 0 0 0 chr6 120181446 120181494 -29335543 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1501 453 36 0 0 chr6 120182302 120182357 -29334680 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1501 1410 89 16 0 chr6 120182428 120182618 -29334419 + B2_Mm2 SINE B2 1 193 -2 5 1501 207 278 130 39 chr6 120183681 120183814 -29333223 - MIRm SINE MIR -7 201 48 5 1501 347 223 40 60 chr6 120184079 120184179 -29332858 + PB1D10 SINE Alu 1 98 -19 5 1501 216 292 146 0 chr6 120184365 120184461 -29332576 - MIRc SINE MIR -38 230 121 5 1501 630 279 103 79 chr6 120184758 120185011 -29332026 - B4A SINE B4 0 292 34 5 1501 402 307 65 14 chr6 120185050 120185189 -29331848 + MER31B LTR ERV1 218 363 -103 5 1501 182 37 37 0 chr6 120185384 120185411 -29331626 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1501 203 400 11 0 chr6 120185412 120185502 -29331535 + MIRc SINE MIR 83 173 -95 5 1501 198 209 0 23 chr6 120185792 120185836 -29331201 - L2b LINE L2 -21 3354 3312 5 1501 242 224 17 17 chr6 120186742 120186801 -29330236 + ID4 SINE ID 15 73 -10 5 1501 468 35 0 0 chr6 120186805 120186863 -29330174 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 5 1501 218 250 19 0 chr6 120187082 120187134 -29329903 - MIR SINE MIR 0 262 210 5 1501 737 194 22 15 chr6 120187163 120187299 -29329738 - B1_Mur1 SINE Alu -6 143 7 5 1501 470 257 32 91 chr6 120187299 120187315 -29329722 - B4 SINE B4 -70 220 78 5 1501 220 234 0 0 chr6 120188473 120188520 -29328517 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1501 1155 200 28 14 chr6 120188666 120188879 -29328158 + B3 SINE B2 1 216 0 5 1501 252 130 0 0 chr6 120189182 120189228 -29327809 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1501 378 61 0 0 chr6 120189258 120189307 -29327730 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1501 493 260 29 0 chr6 120189475 120189579 -29327458 - ID_B1 SINE B4 -114 110 4 5 1501 239 269 0 0 chr6 120189644 120189696 -29327341 - MIR SINE MIR -163 99 48 5 1501 413 36 18 0 chr6 120189839 120189894 -29327143 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1501 411 196 34 17 chr6 120189949 120190125 -29326912 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 1501 285 151 0 0 chr6 120190184 120190237 -29326800 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1501 887 224 24 68 chr6 120191964 120192170 -29324867 + B3A SINE B2 2 198 0 5 1501 1202 200 9 5 chr6 120192171 120192382 -29324655 + B3 SINE B2 5 216 0 5 1502 213 65 0 0 chr6 120193293 120193324 -29323713 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1502 324 197 15 0 chr6 120193325 120193391 -29323646 - ID4 SINE ID -4 79 13 5 1502 376 248 39 29 chr6 120193584 120193688 -29323349 + PB1D9 SINE Alu 2 106 -14 5 1502 726 12 0 0 chr6 120194069 120194152 -29322885 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 1502 535 176 0 0 chr6 120194438 120194529 -29322508 - B1_Mur1 SINE Alu -22 127 37 5 1502 276 209 88 55 chr6 120194456 120194547 -29322490 - MT2B LTR ERVL -339 262 169 5 1502 562 218 7 33 chr6 120194667 120194819 -29322218 - L1MB3 LINE L1 -246 5937 5790 5 1502 534 248 0 0 chr6 120194820 120195086 -29321951 + (TG)n Simple_repeat Simple_repeat 1 266 0 5 1502 294 301 55 0 chr6 120195136 120195209 -29321828 - PB1D10 SINE Alu -40 77 1 5 1502 393 196 109 0 chr6 120195394 120195486 -29321551 + B1_Mus2 SINE Alu 33 134 -13 5 1502 763 187 0 12 chr6 120195511 120195679 -29321358 + CT-rich Low_complexity Low_complexity 3 168 0 5 1502 297 0 0 0 chr6 120195679 120195712 -29321325 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1502 289 0 24 24 chr6 120196008 120196050 -29320987 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 5 1502 1149 52 0 0 chr6 120196051 120196186 -29320851 - B1_Mus2 SINE Alu -12 135 1 5 1502 580 185 65 0 chr6 120196467 120196575 -29320462 + B1_Mur2 SINE Alu 34 148 -1 5 1502 1199 61 0 13 chr6 120197247 120197396 -29319641 - B1_Mus2 SINE Alu 0 147 1 5 1502 227 293 66 13 chr6 120197427 120197503 -29319534 + ID SINE ID 3 82 -142 5 1502 288 354 0 12 chr6 120197525 120197605 -29319432 - ID SINE ID -144 80 2 5 1502 386 305 94 9 chr6 120197654 120197760 -29319277 - RSINE1 SINE B4 -36 129 15 5 1502 362 206 165 0 chr6 120198058 120198155 -29318882 + RSINE1 SINE B4 50 162 -3 5 1502 1110 108 7 0 chr6 120198414 120198562 -29318475 + B1_Mur3 SINE Alu 1 149 0 5 1502 272 269 48 34 chr6 120198771 120198910 -29318127 + L1M2 LINE L1 5479 5616 -684 5 1502 635 247 128 35 chr6 120199007 120199161 -29317876 + L1MB1 LINE L1 5612 5762 -427 5 1502 213 39 0 0 chr6 120199161 120199187 -29317850 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 5 1502 635 247 128 35 chr6 120199187 120199321 -29317716 + L1MB1 LINE L1 5763 5927 -262 5 1502 300 27 0 0 chr6 120199332 120199369 -29317668 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1502 200 303 118 0 chr6 120200813 120200889 -29316148 + MIRb SINE MIR 10 94 -174 5 1502 199 282 14 27 chr6 120201195 120201268 -29315769 - MIRb SINE MIR -72 196 125 5 1502 1260 48 0 0 chr6 120201360 120201507 -29315530 - B1_Mm SINE Alu 0 147 1 5 1502 214 346 84 0 chr6 120202027 120202134 -29314903 + L2 LINE L2 2410 2525 -894 5 1502 264 347 0 0 chr6 120202154 120202229 -29314808 + ID4_ SINE ID 1 75 -8 5 1502 256 256 30 140 chr6 120202250 120202350 -29314687 - MER5A DNA MER1_type -96 93 5 5 1502 283 304 0 28 chr6 120202367 120202438 -29314599 + ID4 SINE ID 15 83 0 5 1502 739 250 34 0 chr6 120202658 120202806 -29314231 + RSINE1 SINE B4 13 165 0 5 1502 1453 189 29 60 chr6 120202881 120203196 -29313841 - MTC LTR MaLR -2 419 115 5 1502 204 40 0 0 chr6 120203200 120203225 -29313812 + (GGA)n Simple_repeat Simple_repeat 3 27 0 5 1502 273 186 17 0 chr6 120203243 120203302 -29313735 + L1M5 LINE L1 5700 5759 -414 5 1502 561 235 0 42 chr6 120203310 120203430 -29313607 + B1F1 SINE Alu 35 149 0 5 1502 476 167 100 12 chr6 120203440 120203555 -29313482 + B1_Mur2 SINE Alu 25 144 -5 5 1502 306 254 0 14 chr6 120203594 120203666 -29313371 + ID4_ SINE ID 2 72 -11 5 1502 555 230 14 82 chr6 120203673 120203745 -29313292 + ID_B1 SINE B4 83 152 -72 5 1502 1446 64 27 5 chr6 120203745 120203933 -29313104 + B2_Mm2 SINE B2 2 193 -2 5 1502 555 230 14 82 chr6 120203933 120204007 -29313030 + ID_B1 SINE B4 153 219 -5 5 1502 194 191 0 21 chr6 120204013 120204061 -29312976 + GA-rich Low_complexity Low_complexity 2 48 0 5 1502 486 282 132 42 chr6 120204102 120204291 -29312746 + MER2 DNA MER2_type 140 345 0 5 1502 527 250 27 111 chr6 120204299 120204560 -29312477 + L1MB7 LINE L1 5836 6074 -110 5 1502 248 0 31 0 chr6 120204598 120204630 -29312407 + (TGG)n Simple_repeat Simple_repeat 2 34 0 5 1502 236 166 45 11 chr6 120205277 120205330 -29311707 - ID4 SINE ID -91 61 10 5 1502 194 0 39 0 chr6 120205972 120205998 -29311039 + (CCA)n Simple_repeat Simple_repeat 1 27 0 5 1502 288 0 0 0 chr6 120207198 120207230 -29309807 + (CCCCCT)n Simple_repeat Simple_repeat 3 34 0 6 1502 493 237 90 22 chr6 120207236 120207370 -29309667 - B1_Mur1 SINE Alu -5 144 2 6 1502 266 233 167 0 chr6 120207398 120207458 -29309579 - ID4_ SINE ID -10 73 4 6 1502 294 95 0 0 chr6 120207833 120207875 -29309162 + (CAT)n Simple_repeat Simple_repeat 2 43 0 6 1502 238 240 49 85 chr6 120207919 120208001 -29309036 + ID4 SINE ID 1 79 -4 6 1502 937 150 7 20 chr6 120208134 120208284 -29308753 + B1_Mur4 SINE Alu 2 149 -1 6 1502 989 233 15 15 chr6 120208402 120208607 -29308430 + B3 SINE B2 2 206 -10 6 1502 235 253 25 25 chr6 120208617 120208698 -29308339 + ID4 SINE ID 3 83 0 6 1502 530 286 8 0 chr6 120208713 120208839 -29308198 - ID_B1 SINE B4 -6 218 92 6 1502 1022 106 14 0 chr6 120208843 120208984 -29308053 - B1_Mus1 SINE Alu 0 148 6 6 1502 259 270 0 36 chr6 120209209 120209294 -29307743 - B1F SINE Alu -60 89 7 6 1502 621 176 14 7 chr6 120210121 120210264 -29306773 + CT-rich Low_complexity Low_complexity 3 146 0 6 1502 267 150 0 0 chr6 120210269 120210309 -29306728 - B1_Mus2 SINE Alu -43 104 65 6 1502 265 264 112 22 chr6 120210309 120210353 -29306684 - MT2B LTR ERVL -337 259 168 6 1502 846 94 8 0 chr6 120210587 120210704 -29306333 + B1_Mur4 SINE Alu 32 149 -1 6 1502 1786 130 92 3 chr6 120210758 120211052 -29305985 + ORR1B1 LTR MaLR 75 394 0 6 1502 243 0 0 0 chr6 120211059 120211086 -29305951 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1502 189 0 0 0 chr6 120211208 120211229 -29305808 + (A)n Simple_repeat Simple_repeat 1 21 0 6 1502 227 194 62 31 chr6 120213778 120213842 -29303195 - ID4 SINE ID -17 66 1 6 1502 210 128 0 0 chr6 120214061 120214100 -29302937 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1502 252 325 139 25 chr6 120214876 120214903 -29302134 - B4A SINE B4 -39 253 145 6 1502 466 278 3 0 chr6 120214903 120215020 -29302017 - B1F2 SINE Alu -21 128 9 6 1502 252 325 139 25 chr6 120215020 120215034 -29302003 - B4A SINE B4 -39 144 78 6 1502 214 140 35 123 chr6 120215337 120215394 -29301643 + L3 LINE CR1 778 829 -3660 6 1502 292 235 14 29 chr6 120215933 120216003 -29301034 + ID4_ SINE ID 1 69 -14 6 1502 197 307 56 95 chr6 120216062 120216117 -29300920 - MIRb SINE MIR -81 187 137 6 1502 825 195 19 73 chr6 120216117 120216322 -29300715 + B2_Mm2 SINE B2 1 194 -1 6 1502 197 307 56 95 chr6 120216322 120216392 -29300645 - MIRb SINE MIR -132 136 67 6 1502 578 300 213 32 chr6 120216929 120217139 -29299898 - B4A SINE B4 -1 291 44 6 1502 1012 186 204 20 chr6 120217166 120217465 -29299572 - ORR1D2 LTR MaLR -23 347 2 6 1502 1279 41 0 0 chr6 120217762 120217908 -29299129 - B1_Mm SINE Alu 0 147 2 6 1502 348 212 157 29 chr6 120217956 120218058 -29298979 - RSINE1 SINE B4 -33 132 18 6 1502 1709 16 0 0 chr6 120218426 120218616 -29298421 + B2_Mm1a SINE B2 2 191 -2 6 1502 473 258 68 0 chr6 120218707 120218839 -29298198 + B1F SINE Alu 1 141 -8 6 1502 586 268 137 17 chr6 120218889 120219064 -29297973 + ID_B1 SINE B4 21 216 -8 6 1502 222 37 0 0 chr6 120219065 120219092 -29297945 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1502 219 193 35 17 chr6 120219281 120219339 -29297698 + MIRb SINE MIR 109 167 -101 6 1502 484 244 121 5 chr6 120219860 120220058 -29296979 - L1MCa LINE L1 -2518 3803 3583 6 1502 552 254 122 41 chr6 120220099 120220110 -29296927 - B3 SINE B2 0 216 205 6 1502 690 160 119 22 chr6 120220110 120220244 -29296793 + B1_Mur2 SINE Alu 2 148 -1 6 1502 627 251 104 2 chr6 120220244 120220429 -29296608 - B3A SINE B2 -12 204 4 6 1502 355 304 129 65 chr6 120220431 120220617 -29296420 - B4A SINE B4 -63 229 32 6 1502 1323 286 143 20 chr6 120220673 120221608 -29295429 - L1MCa LINE L1 -2843 3478 2429 6 1502 357 14 86 0 chr6 120221623 120221693 -29295344 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1502 559 262 246 20 chr6 120221841 120222036 -29295001 - B4A SINE B4 -52 240 2 6 1502 414 262 0 78 chr6 120222044 120222160 -29294877 - PB1D10 SINE Alu -10 107 1 6 1502 330 282 83 8 chr6 120222183 120222315 -29294722 - L1MCa LINE L1 -4404 2104 1963 6 1502 367 241 260 5 chr6 120222373 120222577 -29294460 - L1MCa LINE L1 -4647 1861 1606 6 1502 1204 48 0 0 chr6 120222655 120222800 -29294237 + B1_Mus2 SINE Alu 3 147 0 6 1502 273 57 0 0 chr6 120222916 120222951 -29294086 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 1502 223 324 61 26 chr6 120222986 120223100 -29293937 + MIRc SINE MIR 64 181 -87 6 1502 21 36 0 0 chr6 120223172 120223200 -29293837 + AT_rich Low_complexity Low_complexity 1 28 0 6 1502 824 189 200 0 chr6 120223204 120223384 -29293653 - B3 SINE B2 0 216 1 6 1502 285 342 17 43 chr6 120223758 120223874 -29293163 + PB1 SINE Alu 12 124 -3 6 1502 472 245 18 35 chr6 120223949 120224063 -29292974 - PB1D10 SINE Alu -5 112 1 6 1502 748 232 91 5 chr6 120224092 120224291 -29292746 - B3 SINE B2 0 216 1 6 1502 208 196 232 0 chr6 120224300 120224356 -29292681 + MIR SINE MIR 72 140 -122 6 1502 184 234 0 21 chr6 120226014 120226062 -29290975 - MIR SINE MIR -171 91 45 6 1502 295 280 0 39 chr6 120226391 120226469 -29290568 - ID4 SINE ID -8 75 1 6 1502 268 141 26 90 chr6 120226470 120226510 -29290527 + T-rich Low_complexity Low_complexity 38 74 0 6 1502 418 281 29 15 chr6 120226510 120226647 -29290390 - B1F SINE Alu -8 141 3 6 1502 268 141 26 90 chr6 120226647 120226684 -29290353 + T-rich Low_complexity Low_complexity 2 37 0 6 1502 650 280 26 7 chr6 120226790 120226925 -29290112 + RSINE1 SINE B4 2 140 -25 6 1502 450 53 0 0 chr6 120226925 120226982 -29290055 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1502 650 280 26 7 chr6 120226982 120226997 -29290040 + RSINE1 SINE B4 141 155 -10 6 1502 330 275 0 0 chr6 120227326 120227406 -29289631 + ID4_ SINE ID 2 81 -2 6 1502 1414 143 9 0 chr6 120227428 120227651 -29289386 - URR1B DNA MER1_type 0 225 1 6 1502 863 105 0 8 chr6 120227653 120227787 -29289250 + (GAA)n Simple_repeat Simple_repeat 3 135 0 6 1502 201 272 219 12 chr6 120227837 120227919 -29289118 + MIRm SINE MIR 57 155 -121 6 1502 1151 69 7 0 chr6 120227941 120228086 -29288951 + B1_Mm SINE Alu 2 147 0 6 1502 554 232 4 34 chr6 120228344 120228502 -29288535 + ID_B1 SINE B4 3 198 -26 6 1502 266 320 10 39 chr6 120229279 120229383 -29287654 - L2c LINE L2 -77 3310 3210 6 1502 201 368 44 83 chr6 120229805 120229986 -29287051 + L2a LINE L2 3216 3389 -37 6 1502 361 260 110 0 chr6 120230269 120230369 -29286668 - PB1D9 SINE Alu -9 111 1 6 1502 322 237 75 50 chr6 120230379 120230404 -29286633 + MT2B LTR ERVL 169 289 -310 6 1502 593 161 0 0 chr6 120230404 120230497 -29286540 + B1_Mur2 SINE Alu 41 133 -16 6 1502 336 175 0 0 chr6 120230499 120230562 -29286475 + GA-rich Low_complexity Low_complexity 3 65 0 6 1502 289 344 45 30 chr6 120230794 120230926 -29286111 + B4A SINE B4 60 193 -99 6 1502 694 183 16 8 chr6 120230838 120230959 -29286078 + B1_Mur3 SINE Alu 15 136 -13 6 1502 225 0 0 0 chr6 120231135 120231160 -29285877 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1502 36 0 0 0 chr6 120231762 120231798 -29285239 + AT_rich Low_complexity Low_complexity 1 36 0 6 1502 873 240 178 14 chr6 120231916 120232203 -29284834 + MTEb LTR MaLR 3 336 -43 6 1502 250 105 26 0 chr6 120232193 120232231 -29284806 - MTC LTR MaLR -5 365 327 6 1502 1135 84 0 0 chr6 120232231 120232374 -29284663 + B1_Mus1 SINE Alu 1 143 -5 6 1502 240 35 0 0 chr6 120232374 120232403 -29284634 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1502 279 0 0 0 chr6 120232414 120232445 -29284592 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1502 411 285 148 16 chr6 120232459 120232717 -29284320 - MTC LTR MaLR -117 302 6 6 1502 350 192 0 49 chr6 120232702 120232784 -29284253 + MTEb LTR MaLR 302 379 0 6 1502 562 230 47 16 chr6 120232898 120233026 -29284011 - B1_Mur1 SINE Alu -3 146 15 6 1502 202 321 38 76 chr6 120233585 120233692 -29283345 - MIR SINE MIR -142 126 19 6 1502 220 278 0 0 chr6 120233881 120233935 -29283102 + CT-rich Low_complexity Low_complexity 2 55 0 6 1502 612 176 253 0 chr6 120233935 120234101 -29282936 - B3 SINE B2 0 216 9 6 1502 655 188 55 0 chr6 120234116 120234244 -29282793 - B1_Mur1 SINE Alu -6 143 9 6 1502 273 256 0 50 chr6 120234386 120234473 -29282564 + B1_Mur4 SINE Alu 41 121 -29 6 1502 297 300 0 0 chr6 120235275 120235345 -29281692 + ID2 SINE ID 4 73 -10 6 1502 206 207 17 0 chr6 120235355 120235413 -29281624 + GA-rich Low_complexity Low_complexity 4 62 0 6 1502 230 132 0 0 chr6 120235867 120235905 -29281132 + L1M5 LINE L1 5887 5924 -520 6 1502 430 239 167 30 chr6 120236165 120236333 -29280704 + B3A SINE B2 4 194 -4 6 1502 643 170 20 88 chr6 120236336 120236484 -29280553 + B1_Mur1 SINE Alu 3 140 -9 6 1502 573 83 0 0 chr6 120236485 120236569 -29280468 + (GA)n Simple_repeat Simple_repeat 2 85 0 6 1502 497 165 0 0 chr6 120236613 120236692 -29280345 - B1_Mus2 SINE Alu -1 146 68 6 1502 243 0 0 0 chr6 120236701 120236728 -29280309 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1502 697 271 19 61 chr6 120236849 120237061 -29279976 + ID_B1 SINE B4 4 206 -18 6 1502 252 280 215 0 chr6 120237845 120237952 -29279085 - B3A SINE B2 -11 187 58 6 1502 763 176 24 24 chr6 120238207 120238393 -29278644 - B3 SINE B2 -10 185 6 6 1502 204 83 56 0 chr6 120239109 120239145 -29277892 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 6 1502 890 147 0 65 chr6 120239149 120239302 -29277735 - B1_Mus2 SINE Alu 0 147 5 6 1502 909 215 31 63 chr6 120239917 120240140 -29276897 - ID_B1 SINE B4 -8 216 1 6 1502 726 226 114 16 chr6 120240146 120240339 -29276698 - B3 SINE B2 -1 215 4 6 1502 997 145 42 16 chr6 120240477 120240666 -29276371 + B2_Mm2 SINE B2 2 195 0 7 1502 252 0 0 0 chr6 120240756 120240784 -29276253 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1502 816 149 22 7 chr6 120240786 120240921 -29276116 + MTC LTR MaLR 5 141 -280 7 1502 529 176 53 44 chr6 120240892 120241005 -29276032 + MTC LTR MaLR 308 421 0 7 1502 679 197 71 28 chr6 120241041 120241182 -29275855 + B1_Mus1 SINE Alu 1 147 -1 7 1502 527 196 62 0 chr6 120241891 120241988 -29275049 + B1_Mus2 SINE Alu 40 142 -5 7 1502 802 168 66 0 chr6 120242174 120242311 -29274726 + B1_Mus2 SINE Alu 1 146 -1 7 1502 1371 84 5 35 chr6 120242315 120242512 -29274525 + B2_Mm1t SINE B2 1 191 -2 7 1502 387 208 128 19 chr6 120242546 120242683 -29274354 + B1F SINE Alu 1 149 0 7 1502 22 35 0 0 chr6 120242764 120242793 -29274244 + AT_rich Low_complexity Low_complexity 1 29 0 7 1502 248 325 13 0 chr6 120245466 120245543 -29271494 + ID4_ SINE ID 6 83 0 7 1502 1130 101 87 27 chr6 120245610 120245793 -29271244 + B2_Mm2 SINE B2 1 194 -1 7 1502 1351 105 21 0 chr6 120246512 120246703 -29270334 + B2_Mm2 SINE B2 1 195 0 7 1502 1003 152 11 11 chr6 120246754 120246934 -29270103 - B2_Mm2 SINE B2 -14 181 2 7 1502 847 200 139 11 chr6 120247032 120247219 -29269818 - B3 SINE B2 -5 211 1 7 1502 684 236 74 152 chr6 120247265 120247412 -29269625 + ID_B1 SINE B4 3 149 -75 7 1502 1218 61 0 0 chr6 120247412 120247560 -29269477 - B1_Mus1 SINE Alu 0 148 1 7 1502 684 236 74 152 chr6 120247560 120247642 -29269395 + ID_B1 SINE B4 150 214 -10 7 1502 231 269 121 71 chr6 120247766 120247906 -29269131 - MIRb SINE MIR -119 149 3 7 1502 332 232 200 0 chr6 120248205 120248300 -29268737 - PB1 SINE Alu -8 119 6 7 1502 191 250 0 72 chr6 120248322 120248391 -29268646 - L3 LINE CR1 -3481 1008 945 7 1502 301 292 33 11 chr6 120248518 120248608 -29268429 + B1F SINE Alu 41 132 -17 7 1502 1320 92 43 0 chr6 120248611 120248796 -29268241 - B2_Mm2 SINE B2 -2 193 1 7 1502 805 176 7 40 chr6 120248935 120249083 -29267954 + B1_Mur1 SINE Alu 5 147 -2 7 1502 1167 43 0 0 chr6 120249086 120249224 -29267813 + B1_Mus2 SINE Alu 2 139 -8 7 1502 180 0 0 0 chr6 120249224 120249244 -29267793 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1502 1252 75 0 0 chr6 120249267 120249427 -29267610 + B2_Mm2 SINE B2 2 161 -34 7 1502 342 0 0 0 chr6 120249427 120249465 -29267572 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 7 1502 679 55 321 0 chr6 120249469 120249578 -29267459 - B1_Mur4 SINE Alu -1 149 6 7 1502 592 257 51 10 chr6 120249880 120250032 -29267005 - ID_B1 SINE B4 -4 220 67 7 1502 232 145 177 0 chr6 120250019 120250081 -29266956 - PB1D10 SINE Alu -1 116 44 7 1502 269 270 63 0 chr6 120250099 120250162 -29266875 - tRNA-Ala-GCG tRNA tRNA -8 67 1 7 1502 303 214 71 0 chr6 120250107 120250163 -29266874 - ID4 SINE ID -18 65 6 7 1502 182 159 0 43 chr6 120250474 120250520 -29266517 + C-rich Low_complexity Low_complexity 2 45 0 7 1502 1342 81 37 11 chr6 120250558 120250746 -29266291 - B2_Mm2 SINE B2 -2 193 1 7 1502 26 0 0 0 chr6 120250772 120250798 -29266239 + AT_rich Low_complexity Low_complexity 1 26 0 7 1502 222 226 79 16 chr6 120250956 120251019 -29266018 + ID SINE ID 1 67 -157 7 1502 966 64 11 39 chr6 120251495 120251675 -29265362 + (TCTCC)n Simple_repeat Simple_repeat 2 176 0 7 1502 252 0 0 0 chr6 120251675 120251703 -29265334 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1502 839 149 0 28 chr6 120251704 120251849 -29265188 - B1_Mus1 SINE Alu -2 146 6 7 1502 328 198 88 4 chr6 120252008 120252109 -29264928 - B1F SINE Alu 0 117 1 7 1502 259 246 27 14 chr6 120252051 120252125 -29264912 - B4A SINE B4 -147 145 71 7 1502 591 184 176 0 chr6 120252186 120252311 -29264726 - B1_Mus1 SINE Alu 0 148 2 7 1502 305 262 25 0 chr6 120253293 120253373 -29263664 - ID4 SINE ID 0 83 2 7 1502 521 174 219 104 chr6 120253617 120253809 -29263228 - URR1B DNA MER1_type -10 215 2 7 1502 1179 118 6 0 chr6 120253952 120254122 -29262915 + B2_Mm1t SINE B2 1 171 -22 7 1502 378 0 0 0 chr6 120254166 120254208 -29262829 + (CATA)n Simple_repeat Simple_repeat 2 43 0 7 1502 478 328 38 0 chr6 120254230 120254361 -29262676 - B1F2 SINE Alu -13 136 1 7 1502 564 242 41 32 chr6 120254398 120254575 -29262462 - ID_B1 SINE B4 -30 262 84 7 1502 249 333 54 82 chr6 120254586 120254733 -29262304 + MTEb LTR MaLR 224 375 -4 7 1502 441 0 0 0 chr6 120254739 120254788 -29262249 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1502 300 53 0 0 chr6 120254788 120254825 -29262212 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1502 417 333 48 14 chr6 120254830 120254976 -29262061 + RSINE1 SINE B4 15 165 0 7 1502 756 188 88 31 chr6 120255032 120255191 -29261846 + B3 SINE B2 30 197 -19 7 1502 308 64 21 0 chr6 120256301 120256348 -29260689 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1502 443 63 0 16 chr6 120256491 120256555 -29260482 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1502 260 286 96 87 chr6 120257234 120257464 -29259573 + RLTR12B LTR ERVK 2 233 -295 7 1502 197 77 0 49 chr6 120257701 120257742 -29259295 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1502 224 191 48 0 chr6 120257744 120257786 -29259251 - B1_Mus2 SINE Alu -16 131 88 7 1502 1199 62 0 0 chr6 120257787 120257932 -29259105 + B1_Mm SINE Alu 3 147 0 7 1502 189 0 0 0 chr6 120257932 120257953 -29259084 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1502 618 146 0 0 chr6 120257953 120258049 -29258988 - B1_Mur4 SINE Alu -48 102 7 7 1502 240 277 61 50 chr6 120258410 120258509 -29258528 - MER34A LTR ERV1 -387 184 85 7 1502 342 294 43 0 chr6 120258513 120258605 -29258432 - B1F SINE Alu -51 98 3 7 1502 333 252 97 0 chr6 120258780 120258883 -29258154 + PB1D10 SINE Alu 3 115 -2 7 1502 814 212 46 52 chr6 120258891 120259085 -29257952 + B3A SINE B2 6 198 0 7 1502 3365 275 70 38 chr6 120259204 120260255 -29256782 + Lx8 LINE L1 6237 7336 -137 7 1502 621 227 8 0 chr6 120260255 120260374 -29256663 + PB1D9 SINE Alu 1 120 0 7 1502 3365 275 70 38 chr6 120260374 120260436 -29256601 + Lx8 LINE L1 7337 7386 -87 7 1502 692 174 253 18 chr6 120260451 120260621 -29256416 + B3 SINE B2 5 214 -2 7 1502 23 0 0 0 chr6 120260623 120260646 -29256391 + AT_rich Low_complexity Low_complexity 1 23 0 7 1502 638 115 8 103 chr6 120260647 120260773 -29256264 + PB1D9 SINE Alu 2 115 -5 7 1502 396 0 0 0 chr6 120260776 120260820 -29256217 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1502 1201 88 11 17 chr6 120260821 120260995 -29256042 + B2_Mm1t SINE B2 2 174 -19 7 1502 314 122 305 42 chr6 120261058 120261176 -29255861 + B2_Mm2 SINE B2 47 195 0 7 1502 451 233 121 20 chr6 120261323 120261472 -29255565 + RMER21B LTR ERV1 347 510 -332 7 1502 715 298 87 68 chr6 120261575 120261795 -29255242 - MER21-int LTR ERV1 -103 4088 3878 7 1502 1051 216 14 23 chr6 120261795 120262013 -29255024 - B3 SINE B2 0 216 1 7 1502 715 298 87 68 chr6 120262013 120262275 -29254762 - MER21-int LTR ERV1 -314 3877 3597 7 1502 229 311 40 26 chr6 120262277 120262353 -29254684 - ID4 SINE ID -1 82 6 7 1502 252 274 17 34 chr6 120262551 120262668 -29254369 + CT-rich Low_complexity Low_complexity 3 117 0 7 1502 320 265 117 10 chr6 120262683 120262786 -29254251 - PB1 SINE Alu -2 125 12 7 1502 555 326 15 10 chr6 120262805 120263000 -29254037 - MER21-int LTR ERV1 -2323 1868 1673 7 1502 252 283 0 0 chr6 120263003 120263056 -29253981 + RSINE1 SINE B4 5 57 -108 7 1502 228 67 0 0 chr6 120263143 120263173 -29253864 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1502 285 310 90 0 chr6 120263494 120263594 -29253443 - MER4B-int LTR ERV1 -2409 4349 4241 7 1502 1197 108 37 16 chr6 120263603 120263792 -29253245 - B2_Mm1a SINE B2 0 193 1 7 1502 204 40 0 0 chr6 120263792 120263817 -29253220 + (TTA)n Simple_repeat Simple_repeat 2 26 0 7 1502 1320 221 41 31 chr6 120264193 120264487 -29252550 + ORR1C1 LTR MaLR 1 297 -81 7 1502 261 0 0 0 chr6 120264511 120264540 -29252497 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 7 1502 1264 52 7 0 chr6 120264541 120264696 -29252341 - B2_Mm2 SINE B2 -39 156 1 7 1502 563 77 51 0 chr6 120264696 120264768 -29252269 + ORR1C1 LTR MaLR 309 384 0 7 1502 400 278 85 25 chr6 120264791 120264909 -29252128 - PB1 SINE Alu -2 125 1 7 1502 565 262 32 0 chr6 120264940 120265066 -29251971 + RSINE1 SINE B4 3 132 -33 7 1502 1396 88 15 20 chr6 120265140 120265336 -29251701 - B2_Mm2 SINE B2 0 195 1 7 1502 1387 91 27 0 chr6 120266137 120266323 -29250714 - B2_Mm2 SINE B2 -1 194 4 7 1502 4448 35 2 8 chr6 120266419 120266934 -29250103 - LTRIS3 LTR ERV1 0 512 1 7 1502 532 310 25 25 chr6 120266963 120267165 -29249872 - B4A SINE B4 -89 203 2 7 1502 297 0 0 0 chr6 120267387 120267420 -29249617 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1502 760 301 134 32 chr6 120267586 120267650 -29249387 - L1_Rod LINE L1 -3390 2457 2376 7 1502 1176 81 0 0 chr6 120267650 120267798 -29249239 - B1_Mus1 SINE Alu 0 148 1 7 1502 760 301 134 32 chr6 120267798 120268101 -29248936 - L1_Rod LINE L1 -3472 2375 2049 7 1502 2669 77 11 30 chr6 120268101 120268462 -29248575 + IAPEY2_LTR LTR ERVK 1 354 -3 7 1502 760 301 134 32 chr6 120268462 120268631 -29248406 - L1_Rod LINE L1 -3799 2048 1866 7 1502 533 189 80 9 chr6 120269063 120269175 -29247862 + PB1D9 SINE Alu 1 120 0 7 1502 387 259 63 27 chr6 120269260 120269371 -29247666 - RSINE1 SINE B4 -48 117 3 7 1502 362 291 173 45 chr6 120269384 120269517 -29247520 - RSINE1 SINE B4 0 165 16 7 1502 462 204 0 0 chr6 120269700 120269803 -29247234 + (TA)n Simple_repeat Simple_repeat 2 104 0 7 1502 224 140 0 23 chr6 120269803 120269847 -29247190 + CT-rich Low_complexity Low_complexity 2 44 0 8 1502 387 0 0 0 chr6 120269847 120269890 -29247147 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1502 615 144 145 48 chr6 120269890 120270014 -29247023 - B1_Mus1 SINE Alu -12 136 1 8 1502 333 317 37 37 chr6 120270014 120270187 -29246850 - L1_Rod LINE L1 -6514 1094 921 7 1502 1088 114 10 40 chr6 120270187 120270388 -29246649 + Lx LINE L1 6456 6650 -4 8 1502 333 317 37 37 chr6 120270388 120270404 -29246633 - L1_Rod LINE L1 -6688 920 905 7 1502 676 288 18 194 chr6 120270690 120270921 -29246116 - MTD LTR MaLR -14 405 225 8 1502 1175 48 7 0 chr6 120270921 120271067 -29245970 + B1_Mm SINE Alu 1 147 0 8 1502 676 288 18 194 chr6 120271067 120271283 -29245754 - MTD LTR MaLR -195 224 34 8 1502 1066 139 117 19 chr6 120271283 120271488 -29245549 + URR1A DNA MER1_type 2 226 0 8 1502 676 288 18 194 chr6 120271488 120271530 -29245507 - MTD LTR MaLR -386 33 2 8 1502 828 235 0 11 chr6 120271530 120271715 -29245322 + B3A SINE B2 1 183 -15 8 1502 619 207 91 0 chr6 120271734 120271855 -29245182 - B1_Mur1 SINE Alu -12 137 6 8 1502 632 11 99 44 chr6 120272101 120272192 -29244845 + B1_Mus2 SINE Alu 52 147 0 8 1502 4208 90 56 19 chr6 120272274 120272899 -29244138 + Lx LINE L1 6007 6654 0 8 1502 558 270 23 16 chr6 120273603 120273731 -29243306 - B1F2 SINE Alu -20 129 1 8 1502 1184 150 83 14 chr6 120273839 120274055 -29242982 + Lx4A LINE L1 6828 7058 0 8 1502 24 32 0 0 chr6 120274055 120274086 -29242951 + AT_rich Low_complexity Low_complexity 1 31 0 8 1502 468 276 55 0 chr6 120274095 120274222 -29242815 + RSINE1 SINE B4 1 134 -31 8 1502 804 230 63 14 chr6 120274703 120274910 -29242127 - ID_B1 SINE B4 -2 222 6 8 1502 558 174 6 186 chr6 120275051 120275064 -29241973 - B1_Mur1 SINE Alu 0 149 138 8 1502 189 0 0 0 chr6 120275064 120275085 -29241952 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 8 1502 558 174 6 186 chr6 120275085 120275248 -29241789 - B1_Mur1 SINE Alu -12 137 6 8 1502 429 255 28 9 chr6 120275634 120275741 -29241296 + ID_B1 SINE B4 107 215 -9 8 1502 21 36 0 0 chr6 120275904 120275932 -29241105 + AT_rich Low_complexity Low_complexity 1 28 0 8 1502 1313 14 0 0 chr6 120276131 120276278 -29240759 + B1_Mus2 SINE Alu 1 147 0 8 1502 25 0 0 0 chr6 120276278 120276303 -29240734 + AT_rich Low_complexity Low_complexity 1 25 0 8 1502 6134 16 0 0 chr6 120276337 120277025 -29240012 + L1Md_T LINE L1 4899 5586 -297 8 1502 8663 30 2 0 chr6 120277025 120278019 -29239018 + L1Md_T LINE L1 5587 6582 0 8 1502 690 195 0 24 chr6 120278290 120278416 -29238621 + B3 SINE B2 8 130 -86 8 1502 315 283 106 12 chr6 120278611 120278772 -29238265 - B4A SINE B4 -116 176 1 8 1502 502 287 0 0 chr6 120279697 120279819 -29237218 - MTC LTR MaLR -1 420 299 8 1502 309 272 213 16 chr6 120279925 120280052 -29236985 + RSINE1 SINE B4 3 154 -11 8 1502 30 0 0 0 chr6 120280093 120280123 -29236914 + AT_rich Low_complexity Low_complexity 1 30 0 8 1502 248 247 70 12 chr6 120280142 120280228 -29236809 + PB1 SINE Alu 32 122 -5 8 1502 250 237 0 126 chr6 120280235 120280322 -29236715 + B1F2 SINE Alu 6 81 -68 8 1502 1220 48 0 13 chr6 120280913 120281062 -29235975 - B1_Mus2 SINE Alu 0 147 1 8 1502 753 77 0 0 chr6 120281253 120281357 -29235680 + B1_Mus1 SINE Alu 36 139 -9 8 1502 292 293 116 41 chr6 120281403 120281549 -29235488 - ID_B1 SINE B4 -31 193 37 8 1502 234 210 130 52 chr6 120281574 120281685 -29235352 - ID_B1 SINE B4 -105 119 37 8 1502 487 187 112 0 chr6 120281676 120281783 -29235254 - ID_B1 SINE B4 -105 119 1 8 1502 991 143 0 0 chr6 120282148 120282295 -29234742 - B1_Mus1 SINE Alu 0 148 2 8 1502 27 0 0 0 chr6 120282637 120282664 -29234373 + AT_rich Low_complexity Low_complexity 1 27 0 8 1502 271 275 29 14 chr6 120282679 120282749 -29234288 + tRNA-Ala-GCA tRNA tRNA 1 71 -4 8 1502 520 181 105 0 chr6 120282764 120282869 -29234168 + PB1D9 SINE Alu 1 116 -4 8 1502 848 257 28 9 chr6 120282895 120283111 -29233926 + ID_B1 SINE B4 2 221 -3 8 1502 840 182 158 11 chr6 120283118 120283301 -29233736 + B3 SINE B2 1 210 -6 8 1502 332 276 212 64 chr6 120283327 120283563 -29233474 + B4 SINE B4 16 286 -6 8 1502 466 250 0 81 chr6 120283611 120283759 -29233278 + B1F2 SINE Alu 6 141 -8 8 1502 673 196 49 7 chr6 120283838 120283982 -29233055 + B1_Mur4 SINE Alu 1 150 0 8 1502 254 255 0 0 chr6 120284082 120284133 -29232904 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1502 340 266 0 0 chr6 120284312 120284391 -29232646 - B3A SINE B2 -119 79 1 8 1502 391 257 0 89 chr6 120284408 120284428 -29232609 - ID_B1 SINE B4 0 224 82 8 1502 628 164 10 18 chr6 120284428 120284565 -29232472 - B1_Mus1 SINE Alu -16 133 1 8 1502 294 228 17 9 chr6 120284465 120284580 -29232457 - ORR1B1-int LTR MaLR -763 746 631 8 1502 690 197 82 6 chr6 120284579 120284737 -29232300 - B3A SINE B2 -26 172 3 8 1502 364 277 152 98 chr6 120285146 120285286 -29231751 - B4A SINE B4 -43 249 95 8 1502 584 234 224 44 chr6 120285286 120285469 -29231568 - B3 SINE B2 0 216 1 8 1502 364 277 152 98 chr6 120285469 120285564 -29231473 - B4A SINE B4 -198 94 1 8 1502 1043 107 7 13 chr6 120285757 120285908 -29231129 + B1_Mur4 SINE Alu 1 150 0 8 1502 467 192 242 0 chr6 120286222 120286342 -29230695 + B1F2 SINE Alu 1 149 0 8 1502 394 90 14 0 chr6 120286485 120286550 -29230487 + B2_Mm2 SINE B2 46 116 -82 8 1502 483 100 0 0 chr6 120286719 120286789 -29230248 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1502 1245 27 7 0 chr6 120287177 120287323 -29229714 + B1_Mus2 SINE Alu 1 147 0 8 1502 653 152 116 43 chr6 120287644 120287782 -29229255 + B1_Mur1 SINE Alu 1 148 -1 8 1502 444 239 130 57 chr6 120288603 120288865 -29228172 + L1MA6 LINE L1 5950 6230 -70 8 1502 256 246 0 0 chr6 120288904 120288961 -29228076 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1502 716 241 0 0 chr6 120289469 120289610 -29227427 + B1_Mur1 SINE Alu 1 141 -8 8 1502 312 27 0 0 chr6 120289836 120289873 -29227164 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1502 225 0 0 0 chr6 120289878 120289903 -29227134 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1502 566 231 50 10 chr6 120289948 120290100 -29226937 - B3 SINE B2 -17 176 15 8 1502 772 141 16 0 chr6 120290103 120290231 -29226806 + B1_Mur2 SINE Alu 13 142 -7 8 1502 759 180 256 0 chr6 120290285 120290457 -29226580 + B3 SINE B2 1 216 0 8 1502 1221 81 14 114 chr6 120290480 120290690 -29226347 + B2_Mm2 SINE B2 1 189 -6 8 1502 382 265 37 28 chr6 120290691 120290823 -29226214 - PB1D10 SINE Alu -18 132 9 8 1502 255 282 47 0 chr6 120290749 120290834 -29226203 - B4A SINE B4 -122 170 82 8 1502 261 235 57 29 chr6 120291265 120291370 -29225667 + MER99 DNA hAT? 102 209 -622 8 1502 435 141 0 0 chr6 120291556 120291627 -29225410 - B3 SINE B2 -83 133 63 8 1502 1052 98 134 0 chr6 120291670 120291834 -29225203 - B2_Mm2 SINE B2 -9 186 1 8 1502 549 184 43 130 chr6 120292166 120292271 -29224766 + B1_Mur1 SINE Alu 2 101 -48 8 1502 1154 68 0 7 chr6 120292271 120292419 -29224618 - B1_Mus2 SINE Alu 0 147 1 8 1502 549 184 43 130 chr6 120292419 120292475 -29224562 + B1_Mur1 SINE Alu 102 149 0 8 1502 414 266 220 0 chr6 120292517 120292694 -29224343 - ID_B1 SINE B4 -5 219 4 8 1502 286 358 104 0 chr6 120293020 120293193 -29223844 + LTR16A LTR ERVL 255 445 -6 8 1502 429 293 52 8 chr6 120293414 120293548 -29223489 + RSINE1 SINE B4 5 144 -21 8 1502 25 0 0 0 chr6 120293626 120293651 -29223386 + AT_rich Low_complexity Low_complexity 1 25 0 8 1502 466 218 91 0 chr6 120293655 120293765 -29223272 + B1_Mur1 SINE Alu 3 122 -27 8 1502 507 305 87 30 chr6 120293945 120294113 -29222924 + HERV16-int LTR ERVL 2014 2193 -2803 8 1502 180 0 0 0 chr6 120294113 120294133 -29222904 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 8 1502 507 305 87 30 chr6 120294133 120294194 -29222843 + HERV16-int LTR ERVL 2194 2256 -2740 8 1502 283 235 196 0 chr6 120294303 120294405 -29222632 + HERV16-int LTR ERVL 2464 2585 -2411 8 1502 240 35 0 0 chr6 120294463 120294492 -29222545 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1502 1124 23 30 0 chr6 120294492 120294624 -29222413 - B1_Mm SINE Alu -10 137 2 8 1502 271 301 36 0 chr6 120294755 120294838 -29222199 + PB1D10 SINE Alu 1 86 -31 8 1502 189 107 0 0 chr6 120294844 120294872 -29222165 + (CAAG)n Simple_repeat Simple_repeat 4 31 0 8 1502 304 247 133 11 chr6 120294931 120295021 -29222016 + B4A SINE B4 119 219 -73 8 1502 732 235 33 48 chr6 120295028 120295167 -29221870 + B3 SINE B2 1 143 -73 8 1502 312 27 0 0 chr6 120295167 120295204 -29221833 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1502 732 235 33 48 chr6 120295204 120295274 -29221763 + B3 SINE B2 144 207 -9 8 1502 570 157 154 16 chr6 120295305 120295428 -29221609 - B1_Mus1 SINE Alu 0 148 9 8 1502 29 47 0 0 chr6 120295428 120295471 -29221566 + AT_rich Low_complexity Low_complexity 1 43 0 8 1502 1237 101 31 16 chr6 120295729 120295890 -29221147 + B2_Mm2 SINE B2 1 161 -34 8 1502 266 0 29 0 chr6 120295890 120295924 -29221113 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 8 1502 1237 101 31 16 chr6 120295924 120295954 -29221083 + B2_Mm2 SINE B2 162 195 0 8 1502 604 255 20 20 chr6 120295975 120296123 -29220914 + B1F SINE Alu 2 149 0 8 1502 287 241 66 107 chr6 120296202 120296323 -29220714 + MT2B LTR ERVL 143 258 -343 8 1502 538 179 20 82 chr6 120296227 120296373 -29220664 + B1_Mus1 SINE Alu 10 146 -2 8 1502 351 242 180 0 chr6 120296410 120296538 -29220499 + L1MB3 LINE L1 5993 6143 -40 8 1502 235 294 75 8 chr6 120296542 120296662 -29220375 + B1F SINE Alu 14 141 -8 8 1502 287 254 0 0 chr6 120296680 120296739 -29220298 + tRNA-Ala-GCY_ tRNA tRNA 3 61 -14 8 1502 250 230 53 13 chr6 120296914 120296989 -29220048 + RSINE1 SINE B4 85 162 -3 8 1502 243 0 0 0 chr6 120296991 120297018 -29220019 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1502 698 149 0 130 chr6 120297154 120297316 -29219721 + B1_Mur2 SINE Alu 9 149 0 9 1502 3511 28 2 0 chr6 120297542 120297937 -29219100 + MTA_Mm LTR MaLR 1 396 0 9 1502 1293 97 38 0 chr6 120297989 120298175 -29218862 + B2_Mm2 SINE B2 2 194 -1 9 1502 553 272 81 29 chr6 120298227 120298401 -29218636 - B3A SINE B2 -2 196 14 9 1502 597 120 271 96 chr6 120298629 120298795 -29218242 + RMER6A LTR ERVK 1 195 -561 9 1502 1116 116 6 0 chr6 120298796 120298960 -29218077 + B2_Mm1t SINE B2 1 165 -28 9 1502 525 104 0 59 chr6 120298961 120299114 -29217923 + GA-rich Low_complexity Low_complexity 1 144 0 9 1502 2988 139 8 34 chr6 120299117 120299707 -29217330 + RMER6A LTR ERVK 181 755 -1 9 1502 417 256 27 94 chr6 120300040 120300231 -29216806 - B4A SINE B4 0 292 118 9 1502 677 250 0 14 chr6 120300543 120300689 -29216348 - B1_Mur1 SINE Alu -3 146 3 9 1502 1244 28 0 0 chr6 120300710 120300851 -29216186 + B1_Mm SINE Alu 1 141 -6 9 1502 216 0 0 0 chr6 120300854 120300878 -29216159 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1502 1257 105 9 67 chr6 120301031 120301256 -29215781 + RMER6B LTR ERVK 1 212 -249 9 1502 1502 37 0 99 chr6 120301260 120301472 -29215565 + B2_Mm1a SINE B2 2 192 -1 9 1502 1199 74 0 0 chr6 120301488 120301636 -29215401 + B1_Mus1 SINE Alu 1 148 0 9 1502 243 0 0 0 chr6 120301636 120301663 -29215374 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1502 361 236 67 0 chr6 120301665 120301754 -29215283 + ID_B1 SINE B4 109 203 -21 9 1502 779 75 42 0 chr6 120301811 120301931 -29215106 + B2_Mm2 SINE B2 1 125 -70 9 1502 499 167 127 18 chr6 120302026 120302136 -29214901 + B1_Mur1 SINE Alu 1 122 -27 9 1502 180 0 0 0 chr6 120302157 120302177 -29214860 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1502 1074 78 42 0 chr6 120302179 120302321 -29214716 - B1_Mus1 SINE Alu 0 148 1 9 1502 968 179 139 16 chr6 120302461 120302648 -29214389 + B3 SINE B2 1 210 -6 9 1502 587 244 42 32 chr6 120302998 120303183 -29213854 + B3 SINE B2 2 192 -3 9 1502 1247 41 0 0 chr6 120303186 120303333 -29213704 + B1_Mus2 SINE Alu 1 147 0 9 1502 668 174 68 8 chr6 120303540 120303673 -29213364 - B1_Mur2 SINE Alu 0 149 9 9 1502 806 135 62 34 chr6 120303705 120303851 -29213186 + B1_Mur4 SINE Alu 1 150 0 9 1502 543 129 0 0 chr6 120304360 120304445 -29212592 - B1_Mur4 SINE Alu 0 150 66 9 1502 510 275 109 33 chr6 120304470 120304654 -29212383 - ID_B1 SINE B4 -3 221 24 9 1502 226 299 0 13 chr6 120304787 120304865 -29212172 - B1_Mur1 SINE Alu -9 140 64 9 1502 1266 41 0 0 chr6 120304995 120305142 -29211895 + B1_Mm SINE Alu 1 147 0 9 1502 25 31 0 0 chr6 120305207 120305239 -29211798 + AT_rich Low_complexity Low_complexity 1 32 0 9 1502 246 160 0 0 chr6 120305508 120305558 -29211479 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1502 680 151 372 7 chr6 120305692 120305845 -29211192 - B3 SINE B2 -7 209 1 9 1502 244 167 0 85 chr6 120305904 120305963 -29211074 + B1_Mur2 SINE Alu 96 149 0 9 1502 680 133 117 0 chr6 120306143 120306271 -29210766 - B1_Mur1 SINE Alu -1 148 6 9 1502 319 214 51 80 chr6 120306165 120306302 -29210735 - MT2B LTR ERVL -330 271 139 9 1502 309 242 33 11 chr6 120306492 120306584 -29210453 + B1F1 SINE Alu 54 147 -2 9 1502 242 325 93 31 chr6 120306608 120306770 -29210267 - MurSatRep1 Unknown Unknown -1873 264 93 9 1502 227 273 25 25 chr6 120306906 120306985 -29210052 - ID4 SINE ID -3 80 2 9 1502 222 305 24 12 chr6 120306992 120307075 -29209962 - MIRb SINE MIR -71 197 114 9 1502 627 51 0 0 chr6 120307853 120307932 -29209105 + (GGGGA)n Simple_repeat Simple_repeat 4 82 0 9 1502 249 240 0 0 chr6 120307978 120308028 -29209009 - B3 SINE B2 -119 97 48 9 1502 325 238 171 0 chr6 120308013 120308118 -29208919 - B1F2 SINE Alu -13 136 14 9 1502 1136 30 0 22 chr6 120308333 120308470 -29208567 + B1_Mm SINE Alu 2 135 -12 9 1502 390 21 0 0 chr6 120308470 120308517 -29208520 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 9 1502 219 158 0 0 chr6 120308885 120308923 -29208114 - B1F SINE Alu -111 38 1 9 1502 1247 34 0 0 chr6 120309137 120309284 -29207753 + B1_Mus2 SINE Alu 1 147 0 9 1502 243 0 0 0 chr6 120309284 120309311 -29207726 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1502 981 108 51 0 chr6 120309353 120309370 -29207667 - B2_Mm2 SINE B2 -30 165 148 9 1502 204 40 0 0 chr6 120309370 120309395 -29207642 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1502 981 108 51 0 chr6 120309395 120309534 -29207503 - B2_Mm2 SINE B2 -48 147 2 9 1502 4835 108 28 82 chr6 120309557 120309692 -29207345 - RLTR13B4 LTR ERVK 0 803 671 9 1502 1341 75 5 51 chr6 120309692 120309889 -29207148 - B2_Mm1a SINE B2 -4 189 2 9 1502 4835 108 28 82 chr6 120309889 120310601 -29206436 - RLTR13B4 LTR ERVK -133 670 2 9 1502 186 43 0 0 chr6 120310602 120310625 -29206412 + (GGA)n Simple_repeat Simple_repeat 2 24 0 9 1502 26 30 0 0 chr6 120310728 120310761 -29206276 + AT_rich Low_complexity Low_complexity 1 33 0 9 1502 402 179 0 0 chr6 120310836 120310903 -29206134 - ID_B1 SINE B4 -10 214 148 9 1502 1304 115 11 0 chr6 120310996 120311178 -29205859 + B2_Mm1t SINE B2 1 184 -9 9 1502 531 309 38 49 chr6 120311186 120311370 -29205667 - B3A SINE B2 -16 182 1 9 1502 517 216 47 16 chr6 120311377 120311504 -29205533 - B1_Mus1 SINE Alu -4 144 14 9 1502 221 242 29 43 chr6 120311554 120311623 -29205414 + PB1D10 SINE Alu 42 109 -8 9 1502 468 302 13 57 chr6 120311645 120311803 -29205234 + RSINE1 SINE B4 2 152 -13 9 1502 249 241 121 0 chr6 120311816 120311874 -29205163 + ID4_ SINE ID 16 80 -3 9 1502 359 296 28 9 chr6 120312033 120312142 -29204895 + PB1 SINE Alu 15 125 -2 9 1502 236 267 144 0 chr6 120312333 120312423 -29204614 - ID_B1 SINE B4 0 224 122 9 1502 755 182 20 20 chr6 120312496 120312642 -29204395 + B1_Mur3 SINE Alu 3 148 -1 9 1502 226 323 62 0 chr6 120312850 120312915 -29204122 + ID4 SINE ID 5 73 -10 9 1502 460 237 85 0 chr6 120313092 120313210 -29203827 - RSINE1 SINE B4 -35 130 3 9 1502 255 333 61 0 chr6 120313210 120313323 -29203714 - B1F2 SINE Alu -23 126 7 9 1502 300 27 0 0 chr6 120315004 120315041 -29201996 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1502 483 132 0 0 chr6 120315041 120315132 -29201905 + (GA)n Simple_repeat Simple_repeat 2 92 0 9 1502 313 258 78 62 chr6 120315132 120315260 -29201777 - RSINE1 SINE B4 -29 136 7 9 1502 207 0 0 0 chr6 120315657 120315680 -29201357 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1502 24 0 0 0 chr6 120315930 120315954 -29201083 + AT_rich Low_complexity Low_complexity 1 24 0 9 1502 321 294 28 38 chr6 120316188 120316215 -29200822 - PB1D10 SINE Alu 0 117 13 9 1502 338 266 13 0 chr6 120316215 120316294 -29200743 - ID_B1 SINE B4 -51 173 94 9 1502 886 138 0 107 chr6 120316944 120317122 -29199915 + B2_Mm1a SINE B2 2 160 -33 9 1502 261 0 0 0 chr6 120317122 120317151 -29199886 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 9 1502 562 242 15 29 chr6 120317371 120317507 -29199530 - ID_B1 SINE B4 -89 135 2 9 1502 1022 99 0 0 chr6 120317531 120317662 -29199375 - B1_Mus1 SINE Alu -16 132 2 9 1502 1115 75 0 7 chr6 120317683 120317830 -29199207 - B1_Mm SINE Alu -1 146 1 9 1502 418 197 35 37 chr6 120317830 120317947 -29199090 - B1F SINE Alu -12 138 26 9 1502 471 236 23 38 chr6 120318220 120318352 -29198685 + B3 SINE B2 19 148 -68 9 1502 482 185 110 9 chr6 120318428 120318537 -29198500 - B1_Mus1 SINE Alu 0 120 1 9 1502 516 186 49 41 chr6 120319218 120319341 -29197696 - B1_Mus2 SINE Alu -22 125 2 9 1502 315 363 41 26 chr6 120319341 120319426 -29197611 - B4 SINE B4 -203 89 2 9 1502 442 265 93 29 chr6 120319457 120319597 -29197440 - B3 SINE B2 0 216 68 9 1502 498 190 25 33 chr6 120319696 120319816 -29197221 + PB1D9 SINE Alu 1 119 -1 9 1502 517 103 227 0 chr6 120319940 120320037 -29197000 - PB1D9 SINE Alu -1 119 1 9 1502 340 310 16 89 chr6 120320125 120320159 -29196878 - B4 SINE B4 -173 119 86 9 1502 1447 34 79 0 chr6 120320159 120320177 -29196860 - B2_Mm1a SINE B2 0 193 176 9 1502 207 0 0 0 chr6 120320177 120320200 -29196837 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 9 1502 1447 34 79 0 chr6 120320200 120320359 -29196678 - B2_Mm1a SINE B2 -18 175 3 9 1502 340 310 16 89 chr6 120320359 120320448 -29196589 - B4 SINE B4 -207 85 5 9 1502 339 316 0 9 chr6 120320485 120320600 -29196437 - PB1D7 SINE Alu 0 120 7 9 1502 249 296 84 0 chr6 120320645 120320716 -29196321 - B1_Mur1 SINE Alu -7 142 66 9 1502 286 232 52 15 chr6 120320716 120320799 -29196238 - B4 SINE B4 -11 281 221 9 1502 778 306 122 13 chr6 120320957 120321268 -29195769 - MTE2a LTR MaLR -34 345 1 9 1502 891 138 36 12 chr6 120321472 120321640 -29195397 + URR1A DNA MER1_type 54 225 -1 9 1502 488 325 35 70 chr6 120321640 120321867 -29195170 - B4A SINE B4 -72 220 2 9 1502 415 212 111 0 chr6 120321941 120322040 -29194997 + PB1D9 SINE Alu 5 114 -6 9 1502 210 91 0 0 chr6 120322041 120322074 -29194963 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 9 1502 382 343 24 0 chr6 120322116 120322251 -29194786 + PB1D7 SINE Alu 1 145 -4 9 1502 616 249 171 1 chr6 120322261 120322429 -29194608 + B3A SINE B2 15 212 -4 9 1502 201 47 45 23 chr6 120322887 120322931 -29194106 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 9 1502 1109 76 14 0 chr6 120322933 120323078 -29193959 - B1_Mus1 SINE Alu -1 147 1 9 1502 461 304 65 0 chr6 120323129 120323267 -29193770 + RSINE1 SINE B4 6 152 -13 1 1502 731 142 0 24 chr6 120323329 120323452 -29193585 - B1_Mus2 SINE Alu -7 140 21 1 1502 231 256 0 137 chr6 120323367 120323462 -29193575 - MT2B2 LTR ERVL -327 257 176 1 1502 561 273 44 50 chr6 120323826 120324007 -29193030 - B3A SINE B2 -16 182 3 1 1502 180 0 0 0 chr6 120324049 120324069 -29192968 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1503 21 36 0 0 chr6 120324130 120324158 -29192879 + AT_rich Low_complexity Low_complexity 1 28 0 1 1503 471 303 44 19 chr6 120324362 120324520 -29192517 - RSINE1 SINE B4 0 165 4 9 1503 680 269 19 61 chr6 120324525 120324739 -29192298 - ID_B1 SINE B4 -1 223 19 1 1503 1152 68 0 27 chr6 120325037 120325187 -29191850 - B1_Mm SINE Alu 0 147 2 1 1503 629 241 80 0 chr6 120325445 120325582 -29191455 - B1_Mur2 SINE Alu 0 149 2 1 1503 1201 262 79 20 chr6 120325649 120326003 -29191034 - Lx8 LINE L1 -545 6928 6554 1 1503 2071 107 6 6 chr6 120326061 120326380 -29190657 - ORR1A2 LTR MaLR -8 319 1 1 1503 4576 156 73 47 chr6 120326380 120327340 -29189697 - ORR1A2-int LTR MaLR 0 1963 315 1 1503 805 102 147 16 chr6 120327340 120327469 -29189568 + B1_Mus2 SINE Alu 2 147 0 1 1503 4576 146 33 47 chr6 120327469 120327737 -29189300 - ORR1A2-int LTR MaLR -1478 314 61 1 1503 1631 31 5 0 chr6 120327737 120327928 -29189109 - B2_Mm1a SINE B2 -1 192 1 1 1503 4576 146 33 47 chr6 120327928 120327992 -29189045 - ORR1A2-int LTR MaLR -1732 60 3 1 1503 2280 92 28 3 chr6 120327992 120328309 -29188728 - ORR1A2 LTR MaLR -2 325 1 1 1503 520 211 18 9 chr6 120328312 120328422 -29188615 - B3 SINE B2 -97 119 9 1 1503 697 78 278 0 chr6 120328667 120328782 -29188255 - B1_Mus1 SINE Alu 0 148 2 1 1503 225 0 0 0 chr6 120328805 120328830 -29188207 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1503 1231 48 0 0 chr6 120328830 120328977 -29188060 - B1_Mm SINE Alu 0 147 1 1 1503 540 0 0 0 chr6 120329055 120329115 -29187922 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 1 1503 209 186 47 0 chr6 120329224 120329267 -29187770 + T-rich Low_complexity Low_complexity 2 46 0 1 1503 833 153 0 25 chr6 120329267 120329428 -29187609 - B2_Mm1t SINE B2 0 193 37 1 1503 281 253 48 0 chr6 120329469 120329552 -29187485 - B1_Mur1 SINE Alu -5 144 58 1 1503 319 346 131 60 chr6 120329676 120329990 -29187047 + Tigger7 DNA MER2_type 1 336 -2155 1 1503 249 57 0 0 chr6 120330130 120330165 -29186872 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 1 1503 434 174 109 0 chr6 120330166 120330258 -29186779 - B1_Mus2 SINE Alu -5 142 41 1 1503 615 263 90 15 chr6 120330312 120330513 -29186524 + B3 SINE B2 1 216 0 1 1503 659 256 33 22 chr6 120330765 120330945 -29186092 - B3A SINE B2 -16 182 1 1 1503 309 51 0 0 chr6 120331021 120331060 -29185977 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1 1503 700 21 31 21 chr6 120331061 120331157 -29185880 - U6 snRNA snRNA -10 97 1 1 1503 510 284 60 7 chr6 120331716 120331865 -29185172 - RSINE1 SINE B4 -5 160 4 1 1503 390 160 360 0 chr6 120331899 120331999 -29185038 - B1_Mur4 SINE Alu -14 136 1 1 1503 277 156 0 0 chr6 120332106 120332151 -29184886 - B1_Mur3 SINE Alu -20 129 85 1 1503 1971 199 32 25 chr6 120332151 120332621 -29184416 + RLTR26 LTR ERVK 1 473 -169 1 1503 638 171 9 0 chr6 120332646 120332757 -29184280 + RLTR26 LTR ERVK 531 642 0 1 1503 374 177 0 0 chr6 120332758 120332820 -29184217 - B1_Mus1 SINE Alu -60 88 27 1 1503 254 51 51 0 chr6 120332891 120332930 -29184107 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 1503 802 208 6 35 chr6 120333136 120333310 -29183727 + ORR1A3-int LTR MaLR 376 544 -1419 1 1503 1096 79 0 0 chr6 120333344 120333484 -29183553 - B1_Mm SINE Alu -6 141 2 1 1503 1623 31 0 0 chr6 120333540 120333731 -29183306 - B2_Mm1t SINE B2 -2 191 1 1 1503 21 0 0 0 chr6 120334011 120334032 -29183005 + AT_rich Low_complexity Low_complexity 1 21 0 1 1503 383 267 89 57 chr6 120334339 120334462 -29182575 + B1F SINE Alu 3 129 -20 1 1503 213 269 162 15 chr6 120334494 120334562 -29182475 + ID4 SINE ID 3 80 -3 1 1503 548 134 82 0 chr6 120334593 120334690 -29182347 + B2_Mm2 SINE B2 24 128 -67 1 1503 21 0 0 0 chr6 120334690 120334711 -29182326 + AT_rich Low_complexity Low_complexity 1 21 0 1 1503 186 71 0 0 chr6 120334771 120334799 -29182238 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1503 291 224 35 0 chr6 120334846 120334904 -29182133 - PB1D7 SINE Alu -60 60 1 1 1503 651 229 7 35 chr6 120334911 120335056 -29181981 - B1_Mur2 SINE Alu -5 144 4 1 1503 268 139 13 89 chr6 120335065 120335144 -29181893 + T-rich Low_complexity Low_complexity 5 77 0 1 1503 819 59 227 0 chr6 120335144 120335263 -29181774 - B1_Mm SINE Alu 0 147 2 1 1503 352 376 96 10 chr6 120335409 120335608 -29181429 + MIR SINE MIR 31 246 -16 1 1503 1269 82 12 0 chr6 120335821 120335992 -29181045 + B2_Mm2 SINE B2 5 177 -18 1 1503 809 241 6 40 chr6 120336215 120336392 -29180645 + B3 SINE B2 1 171 -45 1 1503 376 262 62 16 chr6 120336518 120336646 -29180391 - B1F1 SINE Alu -11 138 5 1 1503 525 266 44 94 chr6 120336662 120336865 -29180172 + MER2 DNA MER2_type 115 307 -38 1 1503 774 169 189 63 chr6 120336931 120337080 -29179957 - B3 SINE B2 -1 215 40 1 1503 2600 76 25 3 chr6 120337080 120337438 -29179599 - L1Md_F2 LINE L1 -2 6580 6215 1 1503 774 169 189 63 chr6 120337438 120337478 -29179559 - B3 SINE B2 -177 39 2 1 1503 235 149 0 56 chr6 120337714 120337769 -29179268 + T-rich Low_complexity Low_complexity 17 68 0 1 1503 1008 76 27 14 chr6 120337769 120337915 -29179122 - B1_Mus1 SINE Alu 0 148 1 1 1503 235 149 0 56 chr6 120337915 120337930 -29179107 + T-rich Low_complexity Low_complexity 2 16 0 1 1503 23 0 0 0 chr6 120337996 120338019 -29179018 + AT_rich Low_complexity Low_complexity 1 23 0 1 1503 613 173 56 63 chr6 120339230 120339372 -29177665 - B1_Mur1 SINE Alu 0 149 9 1 1503 277 206 97 56 chr6 120340095 120340167 -29176870 + B1_Mur2 SINE Alu 38 112 -37 1 1503 504 301 44 25 chr6 120340176 120340336 -29176701 - RSINE1 SINE B4 0 165 3 1 1503 227 164 26 0 chr6 120340383 120340431 -29176606 + B3A SINE B2 2 55 -140 1 1503 1687 129 152 13 chr6 120340957 120341272 -29175765 - RLTR15 LTR ERVK 0 359 1 1 1503 377 248 185 69 chr6 120341360 120341490 -29175547 - ID_B1 SINE B4 0 224 80 1 1503 742 236 126 0 chr6 120341666 120341848 -29175189 - B3 SINE B2 -11 205 1 1 1503 739 238 23 11 chr6 120341999 120342173 -29174864 - B3 SINE B2 0 216 41 1 1503 1411 75 16 0 chr6 120342403 120342590 -29174447 - B2_Mm2 SINE B2 -4 191 2 1 1503 350 328 49 0 chr6 120342651 120342773 -29174264 - Charlie5 DNA MER1_type -2495 129 2 1 1503 25 51 0 0 chr6 120342776 120342815 -29174222 + AT_rich Low_complexity Low_complexity 1 39 0 1 1503 537 253 58 96 chr6 120342815 120342834 -29174203 - B2_Mm2 SINE B2 -14 181 162 1 1503 203 103 0 25 chr6 120342834 120342874 -29174163 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1503 847 253 58 96 chr6 120342874 120343042 -29173995 - B3A SINE B2 -34 161 1 1 1503 1715 206 92 5 chr6 120343171 120343542 -29173495 - MTD LTR MaLR -15 404 2 1 1503 1132 62 7 0 chr6 120344481 120344626 -29172411 - B1_Mus1 SINE Alu -1 147 2 1 1503 409 292 33 53 chr6 120344638 120344790 -29172247 - B1_Mur2 SINE Alu 0 149 1 1 1503 246 189 0 54 chr6 120344905 120344961 -29172076 + B1_Mus1 SINE Alu 3 55 -93 1 1503 1329 105 10 10 chr6 120344961 120345154 -29171883 + B2_Mm1t SINE B2 1 193 0 1 1503 242 269 62 44 chr6 120345154 120345210 -29171827 + PB1D10 SINE Alu 55 116 -1 1 1503 945 217 35 0 chr6 120345293 120345491 -29171546 - B3 SINE B2 -7 209 5 1 1503 717 273 12 0 chr6 120345491 120345652 -29171385 - B3 SINE B2 -6 210 48 1 1503 510 282 81 37 chr6 120345689 120345783 -29171254 - RSINE1 SINE B4 -22 143 43 1 1503 4450 103 51 9 chr6 120345783 120346469 -29170568 + RLTR19B LTR ERVK 1 715 0 1 1503 510 282 81 37 chr6 120346469 120346510 -29170527 - RSINE1 SINE B4 -123 42 2 1 1503 446 306 100 150 chr6 120346572 120347011 -29170026 - MTC LTR MaLR 0 421 5 1 1503 488 125 0 0 chr6 120347022 120347102 -29169935 + B1_Mm SINE Alu 68 147 0 1 1503 1065 78 0 0 chr6 120347346 120347488 -29169549 - B1_Mus2 SINE Alu -3 144 3 1 1503 219 358 31 10 chr6 120347534 120347563 -29169474 - ID_B1 SINE B4 -41 183 86 1 1503 227 313 45 0 chr6 120347563 120347630 -29169407 - PB1 SINE Alu -53 74 5 1 1503 731 142 49 56 chr6 120347862 120348004 -29169033 + B1_Mus2 SINE Alu 7 147 0 1 1503 25 65 0 0 chr6 120348007 120348053 -29168984 + AT_rich Low_complexity Low_complexity 1 46 0 1 1503 252 0 0 0 chr6 120348233 120348261 -29168776 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1503 381 245 202 10 chr6 120348271 120348370 -29168667 - ID_B1 SINE B4 -17 207 90 1 1503 994 76 0 94 chr6 120348474 120348633 -29168404 + B1_Mus1 SINE Alu 2 145 -3 1 1503 770 158 22 8 chr6 120348639 120348773 -29168264 + B1_Mur4 SINE Alu 2 137 -13 1 1503 823 158 260 12 chr6 120349349 120349522 -29167515 + B3 SINE B2 1 216 0 1 1503 23 0 0 0 chr6 120349778 120349801 -29167236 + AT_rich Low_complexity Low_complexity 1 23 0 1 1503 219 139 0 0 chr6 120350120 120350156 -29166881 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 1 1503 464 214 205 43 chr6 120350160 120350277 -29166760 - B1_Mur1 SINE Alu -11 138 3 1 1503 596 308 14 0 chr6 120350362 120350508 -29166529 - RSINE1 SINE B4 -15 150 3 1 1503 381 235 90 20 chr6 120350823 120350923 -29166114 + PB1D7 SINE Alu 6 112 -8 1 1503 318 200 53 13 chr6 120351214 120351290 -29165747 - ID2 SINE ID -1 82 4 1 1503 434 98 375 19 chr6 120351389 120351493 -29165544 - B2_Mm2 SINE B2 -8 187 47 1 1503 773 99 259 7 chr6 120351533 120351676 -29165361 - B2_Mm1t SINE B2 -13 180 2 1 1503 330 360 72 0 chr6 120352029 120352140 -29164897 - ID_B1 SINE B4 -20 204 86 1 1503 434 245 19 29 chr6 120352186 120352291 -29164746 - PB1D9 SINE Alu -13 107 4 1 1503 283 318 23 23 chr6 120352214 120352301 -29164736 - B4A SINE B4 -125 167 81 1 1503 266 319 8 42 chr6 120352839 120352933 -29164104 - Lx9 LINE L1 -1213 6431 6341 1 1503 309 82 0 0 chr6 120352933 120352982 -29164055 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1503 266 319 8 42 chr6 120352982 120353005 -29164032 - Lx9 LINE L1 -1304 6340 6318 1 1503 1801 225 58 22 chr6 120353030 120353631 -29163406 - Lx9 LINE L1 -1567 6077 5422 1 1503 931 205 59 20 chr6 120353631 120353835 -29163202 - B3 SINE B2 -4 212 1 1 1503 200 31 62 0 chr6 120353844 120353876 -29163161 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1503 495 237 7 8 chr6 120353942 120354088 -29162949 - B3 SINE B2 -34 182 6 1 1503 570 256 0 67 chr6 120354089 120354223 -29162814 - B1F SINE Alu -13 136 12 1 1503 364 347 116 20 chr6 120354265 120354412 -29162625 - RSINE1 SINE B4 -2 163 3 1 1503 26 30 0 0 chr6 120354414 120354447 -29162590 + AT_rich Low_complexity Low_complexity 1 33 0 1 1503 189 0 0 0 chr6 120354561 120354582 -29162455 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1 1503 1170 48 0 0 chr6 120354584 120354730 -29162307 - B1_Mus2 SINE Alu 0 147 2 1 1503 492 241 26 26 chr6 120354792 120354907 -29162130 - PB1D9 SINE Alu 0 120 6 1 1503 225 328 31 0 chr6 120354850 120354914 -29162123 - B4A SINE B4 -143 149 84 1 1503 721 197 0 8 chr6 120355227 120355355 -29161682 - B1_Mur4 SINE Alu 0 150 24 1 1503 874 164 6 17 chr6 120355547 120355727 -29161310 + CT-rich Low_complexity Low_complexity 3 180 0 1 1503 225 65 0 0 chr6 120355841 120355872 -29161165 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1503 281 302 47 0 chr6 120356098 120356184 -29160853 - 5S rRNA rRNA -31 90 1 1 1503 262 350 79 17 chr6 120357270 120357447 -29159590 + L2a LINE L2 2929 3116 -310 1 1503 802 199 138 16 chr6 120357734 120357923 -29159114 + B3 SINE B2 1 212 -4 1 1503 867 239 15 55 chr6 120358590 120358789 -29158248 - B3 SINE B2 -25 191 1 1 1503 21 36 0 0 chr6 120359186 120359214 -29157823 + AT_rich Low_complexity Low_complexity 1 28 0 1 1503 716 253 45 35 chr6 120359540 120359741 -29157296 - B3 SINE B2 -13 203 1 1 1503 699 176 40 47 chr6 120359883 120360032 -29157005 - B1_Mus1 SINE Alu 0 148 1 1 1503 522 250 158 69 chr6 120360175 120360377 -29156660 + ID_B1 SINE B4 1 220 -4 1 1503 270 217 0 0 chr6 120360480 120360549 -29156488 + CT-rich Low_complexity Low_complexity 1 69 0 1 1503 531 277 124 91 chr6 120360608 120360882 -29156155 - B4A SINE B4 -7 285 3 1 1503 471 305 42 0 chr6 120361056 120361174 -29155863 + RSINE1 SINE B4 2 124 -41 1 1503 1158 81 0 0 chr6 120361329 120361477 -29155560 - B1_Mus1 SINE Alu 0 148 1 1 1503 1255 87 6 0 chr6 120361482 120361654 -29155383 - B2_Mm2 SINE B2 -21 174 2 1 1503 805 276 0 45 chr6 120361683 120361903 -29155134 + B3 SINE B2 1 210 -6 1 1503 312 258 0 39 chr6 120362053 120362130 -29154907 - ID4 SINE ID 0 83 10 1 1503 775 277 42 21 chr6 120362563 120362755 -29154282 + B3 SINE B2 1 196 -20 1 1503 560 215 9 9 chr6 120363017 120363125 -29153912 + B3 SINE B2 16 123 -93 1 1503 224 393 48 16 chr6 120363542 120363666 -29153371 - L2a LINE L2 -26 3400 3273 1 1503 883 166 28 0 chr6 120363717 120363862 -29153175 + B1_Mur4 SINE Alu 2 150 0 1 1503 509 169 131 139 chr6 120364117 120364172 -29152865 - B1_Mur2 SINE Alu -5 144 106 1 1503 883 50 362 0 chr6 120364172 120364313 -29152724 - B2_Mm2 SINE B2 -2 193 2 1 1503 509 169 131 139 chr6 120364313 120364394 -29152643 - B1_Mur2 SINE Alu -44 105 9 1 1503 278 321 52 26 chr6 120365058 120365173 -29151864 + MIRc SINE MIR 126 243 -25 1 1503 381 113 0 0 chr6 120365653 120365706 -29151331 - B1F1 SINE Alu -2 147 95 1 1503 252 344 9 111 chr6 120365751 120365859 -29151178 + MIRc SINE MIR 126 225 -43 1 1503 463 294 0 0 chr6 120365863 120365972 -29151065 - B1_Mur1 SINE Alu -40 109 1 1 1503 751 307 16 5 chr6 120366306 120366496 -29150541 - B3 SINE B2 -24 192 1 1 1503 476 262 65 16 chr6 120366543 120366667 -29150370 - ID_B1 SINE B4 -4 220 91 1 1503 836 217 82 11 chr6 120367020 120367202 -29149835 + B3 SINE B2 3 197 -19 1 1503 909 59 26 13 chr6 120367251 120367385 -29149652 - B1_Mus2 SINE Alu -3 144 30 1 1503 1353 82 16 0 chr6 120367522 120367704 -29149333 + B2_Mm1t SINE B2 2 186 -7 1 1503 798 219 0 0 chr6 120367714 120367860 -29149177 + B1_Mus1 SINE Alu 2 147 -1 1 1503 877 157 35 66 chr6 120367863 120368061 -29148976 + B2_Mm2 SINE B2 1 192 -3 1 1503 1200 34 0 20 chr6 120368063 120368213 -29148824 + B1_Mm SINE Alu 1 147 0 1 1503 288 203 203 0 chr6 120368226 120368300 -29148737 + PB1D9 SINE Alu 25 113 -7 1 1503 200 284 150 35 chr6 120369107 120369220 -29147817 + MIRc SINE MIR 90 215 -53 1 1503 245 294 0 0 chr6 120369223 120369291 -29147746 + PB1D7 SINE Alu 41 108 -12 1 1503 27 0 0 0 chr6 120369386 120369413 -29147624 + AT_rich Low_complexity Low_complexity 1 27 0 1 1503 183 156 0 0 chr6 120369764 120369796 -29147241 + CT-rich Low_complexity Low_complexity 3 34 0 1 1503 1292 94 0 16 chr6 120370155 120370338 -29146699 - B2_Mm2 SINE B2 -14 181 2 1 1503 10072 75 214 10 chr6 120370565 120372188 -29144849 - L1_Mus2 LINE L1 0 6566 4034 1 1503 2553 27 174 9 chr6 120372188 120372528 -29144509 - MTA_Mm LTR MaLR 0 396 1 1 1503 10072 149 158 28 chr6 120372528 120375408 -29141629 - L1_Mus2 LINE L1 -1850 4036 667 1 1503 847 194 0 0 chr6 120375500 120375644 -29141393 + B1_Mus1 SINE Alu 3 146 -2 1 1503 937 134 14 123 chr6 120375860 120376072 -29140965 + B2_Mm2 SINE B2 1 189 -6 1 1503 356 394 71 0 chr6 120376393 120376619 -29140418 - MIRb SINE MIR -12 256 15 1 1503 235 210 52 87 chr6 120378424 120378563 -29138474 + B1_Mur1 SINE Alu 3 149 0 1 1503 391 342 83 69 chr6 120378565 120378782 -29138255 + B4 SINE B4 2 221 -71 1 1503 221 297 62 15 chr6 120378775 120378840 -29138197 + RSINE1 SINE B4 95 162 -3 1 1503 356 244 35 0 chr6 120378893 120378979 -29138058 + BC1_Mm scRNA scRNA 2 90 -62 1 1503 408 316 30 0 chr6 120379337 120379470 -29137567 - B1F1 SINE Alu -12 137 1 1 1503 1629 21 16 0 chr6 120379799 120379988 -29137049 - B2_Mm1t SINE B2 -1 192 1 1 1503 256 306 56 45 chr6 120380511 120380600 -29136437 + PB1D7 SINE Alu 1 90 -30 1 1503 481 272 88 0 chr6 120380527 120380641 -29136396 + ID_B1 SINE B4 94 217 -7 1 1503 545 267 35 5 chr6 120380668 120380845 -29136192 + B3A SINE B2 16 203 -13 1 1503 579 256 23 182 chr6 120380939 120381042 -29135995 + B4 SINE B4 15 209 -83 1 1503 1050 70 0 21 chr6 120381042 120381187 -29135850 + B1_Mm SINE Alu 6 147 0 1 1503 603 263 76 0 chr6 120381206 120381377 -29135660 + B4A SINE B4 102 285 -7 1 1503 273 314 8 79 chr6 120381561 120381577 -29135460 - ID_B1 SINE B4 -99 193 131 1 1503 414 255 0 48 chr6 120381577 120381680 -29135357 - B1F2 SINE Alu -51 98 1 1 1503 273 314 8 79 chr6 120381680 120381693 -29135344 - ID_B1 SINE B4 -99 130 69 1 1503 520 294 15 60 chr6 120382689 120382823 -29134214 + RSINE1 SINE B4 12 139 -26 1 1503 387 0 0 0 chr6 120382858 120382901 -29134136 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 1 1503 773 143 25 0 chr6 120382912 120383031 -29134006 - B1_Mus2 SINE Alu -25 122 1 1 1503 224 300 56 14 chr6 120383195 120383266 -29133771 + B1_Mus1 SINE Alu 33 106 -42 1 1503 601 224 112 82 chr6 120383287 120383554 -29133483 + B4A SINE B4 4 278 -14 1 1503 207 308 177 66 chr6 120383682 120383863 -29133174 - MIR3 SINE MIR 0 208 8 1 1503 25 0 0 0 chr6 120384281 120384306 -29132731 + AT_rich Low_complexity Low_complexity 1 25 0 1 1503 281 26 26 0 chr6 120384372 120384410 -29132627 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 1 1503 25 34 0 33 chr6 120384425 120384444 -29132593 + AT_rich Low_complexity Low_complexity 1 19 0 1 1503 683 160 47 16 chr6 120384444 120384571 -29132466 + B1_Mus1 SINE Alu 5 135 -13 1 1503 25 34 0 33 chr6 120384571 120384586 -29132451 + AT_rich Low_complexity Low_complexity 1 15 0 1 1503 1533 43 21 0 chr6 120384586 120384774 -29132263 - B2_Mm1t SINE B2 0 193 2 1 1503 25 34 0 33 chr6 120384774 120384799 -29132238 + AT_rich Low_complexity Low_complexity 1 25 0 1 1503 1365 58 0 6 chr6 120384882 120385055 -29131982 + B2_Mm2 SINE B2 5 176 -19 1 1503 267 278 0 44 chr6 120385633 120385734 -29131303 - ID4 SINE ID -59 93 1 1 1503 385 252 31 54 chr6 120385754 120385884 -29131153 - RSINE1 SINE B4 -36 129 3 1 1503 333 0 0 0 chr6 120386403 120386440 -29130597 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1 1503 1094 56 28 0 chr6 120386515 120386659 -29130378 - B1_Mus1 SINE Alu 0 148 1 1 1503 1217 81 58 0 chr6 120386799 120386973 -29130064 - B2_Mm2 SINE B2 -5 190 7 1 1503 927 135 13 33 chr6 120387255 120387408 -29129629 - B1_Mur4 SINE Alu 0 150 1 1 1503 359 284 28 56 chr6 120387626 120387734 -29129303 + B1F SINE Alu 25 129 -20 1 1503 216 111 0 0 chr6 120390376 120390412 -29126625 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1503 378 265 19 48 chr6 120391054 120391078 -29125959 - AmnSINE1 SINE SINE -474 101 3 1 1503 425 192 26 0 chr6 120391078 120391156 -29125881 - 5S rRNA rRNA -39 82 3 1 1503 21 0 0 0 chr6 120391752 120391773 -29125264 + AT_rich Low_complexity Low_complexity 1 21 0 1 1503 809 203 150 0 chr6 120391858 120392045 -29124992 + B3 SINE B2 1 215 -1 1 1503 377 239 88 44 chr6 120392381 120392495 -29124542 + PB1D9 SINE Alu 2 120 0 1 1503 480 231 25 33 chr6 120392908 120393029 -29124008 + PB1D9 SINE Alu 1 120 0 1 1503 684 209 14 21 chr6 120393097 120393239 -29123798 + B1_Mur4 SINE Alu 2 142 -8 1 1503 782 234 228 61 chr6 120393735 120394326 -29122711 - RMER6C LTR ERVK 0 690 1 1 1503 1100 90 28 0 chr6 120394733 120394877 -29122160 - B1_Mus1 SINE Alu 0 148 1 1 1503 724 112 182 8 chr6 120395059 120395185 -29121852 - B1_Mus1 SINE Alu 0 148 1 1 1503 1218 68 0 0 chr6 120395381 120395529 -29121508 - B1_Mus1 SINE Alu 0 148 1 1 1503 336 102 0 0 chr6 120396049 120396098 -29120939 + (TTATA)n Simple_repeat Simple_repeat 1 49 0 1 1503 220 340 0 145 chr6 120396100 120396217 -29120820 + PB1D10 SINE Alu 15 114 -3 1 1503 333 325 107 8 chr6 120396223 120396344 -29120693 + RSINE1 SINE B4 2 134 -31 1 1503 269 238 12 24 chr6 120396346 120396428 -29120609 + CT-rich Low_complexity Low_complexity 2 82 0 1 1503 548 79 0 84 chr6 120396463 120396546 -29120491 - B2_Mm2 SINE B2 -116 79 4 1 1503 1006 142 53 37 chr6 120396570 120396760 -29120277 - B2_Mm2 SINE B2 -1 194 2 1 1503 201 208 42 0 chr6 120396910 120396958 -29120079 + GA-rich Low_complexity Low_complexity 1 50 0 1 1503 1402 44 72 0 chr6 120396981 120397161 -29119876 + B2_Mm1t SINE B2 1 193 0 1 1503 1366 70 0 41 chr6 120397170 120397365 -29119672 + B2_Mm2 SINE B2 9 195 0 1 1503 320 237 75 93 chr6 120397417 120397524 -29119513 + MT2B LTR ERVL 136 240 -361 1 1503 474 218 0 0 chr6 120397454 120397532 -29119505 + B1_Mus2 SINE Alu 14 91 -56 1 1503 858 242 22 27 chr6 120397568 120397751 -29119286 + B3A SINE B2 1 182 -16 1 1503 1240 103 60 5 chr6 120397826 120398011 -29119026 + B2_Mm2 SINE B2 1 195 0 1 1503 228 282 67 30 chr6 120398078 120398213 -29118824 - L1MD2 LINE L1 -206 6153 6014 1 1503 1821 213 65 12 chr6 120398226 120398626 -29118411 + MTC LTR MaLR 1 421 0 1 1503 1488 201 98 122 chr6 120398626 120398980 -29118057 + ORR1D-int LTR MaLR 816 1196 -174 1 1503 1220 49 7 0 chr6 120398980 120399124 -29117913 - B1_Mm SINE Alu 0 147 3 1 1503 1488 201 98 122 chr6 120399124 120399239 -29117798 + ORR1D-int LTR MaLR 1197 1275 -95 1 1503 2464 64 3 19 chr6 120399239 120399559 -29117478 - L1_Mus1 LINE L1 0 6567 6253 1 1503 827 90 0 0 chr6 120399560 120399671 -29117366 - B1_Mus2 SINE Alu -12 135 25 1 1503 511 200 12 0 chr6 120399759 120399844 -29117193 + B3 SINE B2 126 211 -5 1 1503 1306 34 0 0 chr6 120399999 120400146 -29116891 + B1_Mus2 SINE Alu 1 147 0 1 1503 894 187 43 8 chr6 120400551 120400741 -29116296 + B3 SINE B2 2 194 -1 1 1503 388 322 119 3 chr6 120400788 120401081 -29115956 + MERVL-int LTR ERVL 3369 3695 -2019 1 1503 470 306 71 22 chr6 120401088 120401272 -29115765 + B4A SINE B4 22 214 -78 1 1503 295 300 45 0 chr6 120401291 120401401 -29115636 + B4A SINE B4 12 126 -166 1 1503 289 312 103 65 chr6 120401401 120401470 -29115567 + B3 SINE B2 21 199 -17 1 1503 1001 215 105 4 chr6 120401514 120401751 -29115286 - MTD LTR MaLR -14 405 145 1 1503 909 163 174 19 chr6 120401751 120401964 -29115073 + RMER4B LTR ERVK 2 247 -338 1 1503 192 152 0 0 chr6 120401989 120402022 -29115015 + GA-rich Low_complexity Low_complexity 1 33 0 1 1503 1045 71 12 0 chr6 120402022 120402191 -29114846 + (GAA)n Simple_repeat Simple_repeat 2 172 0 1 1503 634 211 85 82 chr6 120402210 120402457 -29114580 + RMER4B LTR ERVK 263 555 -56 1 1503 969 138 0 7 chr6 120402676 120402822 -29114215 + B1_Mus2 SINE Alu 1 145 -2 1 1503 262 282 0 23 chr6 120402844 120402931 -29114106 + MERVL-int LTR ERVL 4165 4249 -1512 1 1503 418 308 94 15 chr6 120402988 120403255 -29113782 + MERVL-int LTR ERVL 4235 4522 -963 1 1503 249 108 0 0 chr6 120403819 120403856 -29113181 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1503 926 77 5 29 chr6 120403856 120403994 -29113043 - B1_Mus1 SINE Alu 0 148 10 1 1503 737 181 75 1 chr6 120404730 120404885 -29112152 + ORR1E-int LTR MaLR 1226 1368 -2 1 1503 318 238 161 35 chr6 120404885 120404972 -29112065 + ORR1E LTR MaLR 7 104 -255 1 1503 441 0 0 0 chr6 120404997 120405046 -29111991 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1503 1277 87 49 5 chr6 120405553 120405738 -29111299 - B2_Mm1t SINE B2 0 193 1 1 1503 279 144 255 0 chr6 120406583 120406675 -29110362 - B2_Mm2 SINE B2 0 195 64 1 1503 1134 84 83 12 chr6 120406770 120406939 -29110098 - B2_Mm2 SINE B2 -13 182 2 1 1503 452 187 138 74 chr6 120407200 120407362 -29109675 + B3A SINE B2 1 190 -8 1 1503 971 94 189 0 chr6 120407362 120407521 -29109516 - B2_Mm1a SINE B2 -3 190 2 1 1503 245 188 17 200 chr6 120407521 120407540 -29109497 + B2_Mm1t SINE B2 169 183 -10 1 1503 1345 89 10 30 chr6 120407563 120407761 -29109276 + B2_Mm2 SINE B2 2 195 0 1 1503 1124 113 36 0 chr6 120407772 120407940 -29109097 + B2_Mm1a SINE B2 6 179 -14 1 1503 258 82 396 45 chr6 120407962 120408053 -29108984 + B2_Mm2 SINE B2 70 192 -3 1 1503 648 59 0 12 chr6 120408055 120408141 -29108896 + B2_Mm2 SINE B2 7 91 -104 1 1503 212 271 121 76 chr6 120408141 120408187 -29108850 + B4A SINE B4 7 144 -148 1 1503 195 42 0 0 chr6 120408872 120408896 -29108141 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1503 754 205 13 18 chr6 120408925 120409115 -29107922 + B3 SINE B2 9 198 0 1 1503 23 33 0 0 chr6 120409853 120409883 -29107154 + AT_rich Low_complexity Low_complexity 1 30 0 1 1503 228 208 42 42 chr6 120409896 120410183 -29106854 + (TTATA)n Simple_repeat Simple_repeat 1 287 0 1 1503 1237 41 7 0 chr6 120410203 120410349 -29106688 - B1_Mus2 SINE Alu 0 147 1 1 1503 477 216 0 0 chr6 120410361 120410458 -29106579 - B3 SINE B2 0 216 120 1 1503 1302 27 0 0 chr6 120410458 120410605 -29106432 + B1_Mus1 SINE Alu 2 148 0 1 1503 432 158 0 0 chr6 120410605 120410681 -29106356 + GA-rich Low_complexity Low_complexity 1 76 0 1 1503 754 206 15 0 chr6 120410683 120410814 -29106223 - B3 SINE B2 -82 134 2 1 1503 195 42 0 0 chr6 120411126 120411150 -29105887 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1503 1649 105 241 10 chr6 120411677 120411976 -29105061 + RLTR9A LTR ERVK 1 368 0 1 1503 256 250 13 53 chr6 120412502 120412578 -29104459 + L2 LINE L2 1872 1944 -1475 1 1503 344 40 0 20 chr6 120412685 120412736 -29104301 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1503 305 200 23 70 chr6 120415087 120415173 -29101864 - L1M2 LINE L1 -2970 3173 3092 1 1503 666 67 83 28 chr6 120415176 120415284 -29101753 - B1_Mus1 SINE Alu 0 148 35 1 1503 824 185 138 21 chr6 120415357 120415545 -29101492 - B3 SINE B2 -6 210 1 1 1503 613 138 27 7 chr6 120415765 120415911 -29101126 + (CA)n Simple_repeat Simple_repeat 1 149 0 1 1503 290 152 0 17 chr6 120415971 120416031 -29101006 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1503 531 191 24 12 chr6 120416030 120416285 -29100752 + (CA)n Simple_repeat Simple_repeat 1 258 0 1 1503 186 118 0 0 chr6 120417665 120417699 -29099338 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1503 253 113 69 19 chr6 120417702 120417762 -29099275 - PB1D7 SINE Alu 0 120 55 1 1503 229 191 169 31 chr6 120417802 120417867 -29099170 + MT2B LTR ERVL 179 252 -349 1 1503 320 123 88 0 chr6 120417833 120417890 -29099147 + B1_Mur3 SINE Alu 66 127 -22 1 1503 658 250 52 19 chr6 120418182 120418337 -29098700 + RSINE1 SINE B4 2 161 -4 1 1503 737 274 66 116 chr6 120418366 120418667 -29098370 + B4A SINE B4 1 286 -6 1 1503 36 0 0 21 chr6 120418709 120418736 -29098301 + AT_rich Low_complexity Low_complexity 1 27 0 1 1503 937 245 40 0 chr6 120418736 120418936 -29098101 + B3 SINE B2 1 208 -8 1 1503 36 0 0 21 chr6 120418936 120418955 -29098082 + AT_rich Low_complexity Low_complexity 1 19 0 1 1503 1219 48 0 0 chr6 120419018 120419164 -29097873 - B1_Mus2 SINE Alu 0 147 2 1 1503 24 32 0 0 chr6 120419216 120419247 -29097790 + AT_rich Low_complexity Low_complexity 1 31 0 1 1503 800 103 26 0 chr6 120419272 120419389 -29097648 - B2_Mm2 SINE B2 -7 188 69 1 1503 1053 139 11 27 chr6 120419393 120419578 -29097459 - B2_Mm2 SINE B2 -12 183 2 1 1503 22 35 0 0 chr6 120421056 120421085 -29095952 + AT_rich Low_complexity Low_complexity 1 29 0 1 1503 389 73 0 18 chr6 120421110 120421166 -29095871 - B2_Mm2 SINE B2 -94 101 47 1 1503 1137 118 65 0 chr6 120421216 120421386 -29095651 - B2_Mm2 SINE B2 -13 182 2 1 1503 444 67 67 0 chr6 120421451 120421541 -29095496 + (TG)n Simple_repeat Simple_repeat 1 96 0 1 1503 207 136 0 43 chr6 120421659 120421705 -29095332 + T-rich Low_complexity Low_complexity 4 47 0 1 1503 236 292 0 158 chr6 120421717 120421831 -29095206 + MT2B LTR ERVL 142 237 -364 1 1503 396 279 48 9 chr6 120421754 120421859 -29095178 + PB1D9 SINE Alu 7 115 -5 1 1503 225 94 0 0 chr6 120424075 120424107 -29092930 + (CGTG)n Simple_repeat Simple_repeat 4 35 0 1 1503 937 151 13 27 chr6 120425024 120425174 -29091863 + B1_Mur2 SINE Alu 2 149 0 1 1503 732 169 49 0 chr6 120426229 120426371 -29090666 - B1_Mur4 SINE Alu -1 149 1 1 1503 232 294 90 53 chr6 120427609 120427742 -29089295 + MIRb SINE MIR 40 177 -91 1 1503 262 343 43 7 chr6 120428514 120428655 -29088382 + MIR SINE MIR 99 244 -18 1 1503 204 288 204 36 chr6 120428825 120428962 -29088075 + MIRc SINE MIR 2 161 -107 1 1503 327 212 15 0 chr6 120429360 120429426 -29087611 + ID4 SINE ID 1 67 -16 1 1503 710 145 128 15 chr6 120430350 120430483 -29086554 - B1_Mur1 SINE Alu -1 148 1 1 1503 1319 113 98 0 chr6 120430727 120430930 -29086107 - URR1A DNA MER1_type -2 224 2 1 1503 630 39 0 0 chr6 120432543 120432620 -29084417 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1503 418 275 59 84 chr6 120432649 120432768 -29084269 + PB1 SINE Alu 1 116 -1 1 1503 242 383 9 27 chr6 120432891 120433001 -29084036 - L2c LINE L2 -6 3381 3274 1 1503 340 297 109 44 chr6 120434166 120434395 -29082642 - L1MB8 LINE L1 -13 6165 5922 1 1503 310 141 29 86 chr6 120434609 120434679 -29082358 + PB1 SINE Alu 62 127 0 1 1503 394 299 33 53 chr6 120434677 120434706 -29082331 + RSINE1 SINE B4 10 38 -127 1 1503 225 0 0 0 chr6 120434706 120434731 -29082306 + (CCCCCA)n Simple_repeat Simple_repeat 2 26 0 1 1503 394 299 33 53 chr6 120434731 120434853 -29082184 + RSINE1 SINE B4 39 157 -8 1 1503 1018 185 36 31 chr6 120434951 120435146 -29081891 + B3 SINE B2 9 204 -12 1 1503 297 0 0 0 chr6 120435396 120435429 -29081608 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1503 234 322 45 11 chr6 120435659 120435747 -29081290 + BC1_Mm scRNA scRNA 16 106 -46 1 1503 268 298 96 9 chr6 120436018 120436133 -29080904 + MIR SINE MIR 58 182 -80 1 1503 219 267 242 8 chr6 120437598 120437730 -29079307 - RSINE1 SINE B4 0 165 3 1 1503 898 133 0 36 chr6 120437744 120437884 -29079153 - B1_Mur3 SINE Alu -1 148 14 1 1503 358 213 36 109 chr6 120437774 120437911 -29079126 - MT2B LTR ERVL -323 278 152 1 1503 297 0 0 0 chr6 120437955 120437988 -29079049 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1 1503 1192 99 0 0 chr6 120437988 120438149 -29078888 - B2_Mm2 SINE B2 -34 161 1 1 1503 768 234 47 56 chr6 120438207 120438420 -29078617 - B3 SINE B2 -5 211 1 1 1503 228 285 149 62 chr6 120438535 120438582 -29078455 + B4A SINE B4 53 226 -65 1 1503 489 229 195 35 chr6 120438582 120438695 -29078342 + PB1 SINE Alu 18 148 -1 1 1503 251 276 36 84 chr6 120439303 120439386 -29077651 + ID4 SINE ID 1 79 -4 1 1503 203 162 0 0 chr6 120443253 120443290 -29073747 + (CAG)n Simple_repeat Simple_repeat 3 39 0 1 1503 211 333 0 0 chr6 120443348 120443450 -29073587 + (CGG)n Simple_repeat Simple_repeat 1 102 0 1 1503 23 33 0 0 chr6 120443473 120443503 -29073534 + GC_rich Low_complexity Low_complexity 1 30 0 1 1503 231 290 0 0 chr6 120443574 120443643 -29073394 + (CCG)n Simple_repeat Simple_repeat 2 70 0 1 1503 274 319 48 56 chr6 120444450 120444576 -29072461 + ID_B1 SINE B4 2 126 -98 1 1503 646 187 24 16 chr6 120444877 120445002 -29072035 + ID_B1 SINE B4 99 224 0 1 1503 309 238 0 101 chr6 120445105 120445194 -29071843 + PB1D10 SINE Alu 1 80 -37 1 1503 1506 52 0 54 chr6 120445583 120445786 -29071251 - B2_Mm1a SINE B2 0 193 2 1 1503 808 161 29 0 chr6 120445796 120445845 -29071192 - B1_Mur3 SINE Alu -7 142 94 1 1503 614 25 12 0 chr6 120445845 120445925 -29071112 + (TC)n Simple_repeat Simple_repeat 2 82 0 1 1503 444 19 0 0 chr6 120445927 120445980 -29071057 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1503 808 161 29 0 chr6 120445980 120446064 -29070973 - B1_Mur3 SINE Alu -56 93 6 1 1503 329 329 93 0 chr6 120446263 120446424 -29070613 + MIRb SINE MIR 67 242 -26 1 1503 929 246 18 32 chr6 120447101 120447319 -29069718 - B3 SINE B2 -1 215 1 1 1503 426 100 0 12 chr6 120447518 120447632 -29069405 - B2_Mm2 SINE B2 0 195 47 1 1503 1202 111 35 0 chr6 120447664 120447836 -29069201 - B2_Mm1t SINE B2 -14 179 2 1 1503 450 0 0 0 chr6 120447853 120447903 -29069134 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1503 817 144 68 0 chr6 120449124 120449256 -29067781 - B1_Mur2 SINE Alu -8 141 1 1 1503 237 250 114 29 chr6 120449270 120449340 -29067697 - ID4_ SINE ID -4 79 4 1 1503 305 194 160 28 chr6 120449340 120449432 -29067605 - B3 SINE B2 -35 181 76 1 1503 1211 100 27 8 chr6 120449485 120449678 -29067359 - B2_Mm2 SINE B2 0 198 1 1 1503 598 100 0 43 chr6 120449689 120449783 -29067254 - B1_Mur4 SINE Alu 0 150 61 1 1503 335 232 80 50 chr6 120449889 120449989 -29067048 - PB1D9 SINE Alu -3 117 15 1 1503 449 223 256 0 chr6 120449931 120450052 -29066985 - ID_B1 SINE B4 -71 153 2 1 1503 1337 56 11 0 chr6 120450070 120450248 -29066789 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1503 876 134 49 7 chr6 120450261 120450404 -29066633 - B1_Mur4 SINE Alu -1 149 1 1 1503 1286 159 144 25 chr6 120450471 120450748 -29066289 + ORR1D1 LTR MaLR 65 374 0 1 1503 967 194 44 88 chr6 120450748 120450996 -29066041 + MTE2b LTR MaLR 114 350 -29 1 1503 180 267 111 0 chr6 120450996 120451041 -29065996 + MIR SINE MIR 14 63 -199 1 1503 1466 119 12 60 chr6 120451054 120451247 -29065790 - RLTR11A LTR ERVK 0 528 347 1 1503 1458 71 16 0 chr6 120451247 120451430 -29065607 - B2_Mm2 SINE B2 -8 187 2 1 1503 1466 119 12 60 chr6 120451430 120451486 -29065551 - RLTR11A LTR ERVK -182 346 291 1 1503 285 149 0 0 chr6 120451481 120451528 -29065509 + RLTR11A LTR ERVK 482 528 0 1 1503 911 301 125 37 chr6 120451535 120452022 -29065015 - MT2A LTR ERVL -3 530 1 1 1503 387 284 107 119 chr6 120452031 120452283 -29064754 + MTEb LTR MaLR 1 249 -130 1 1503 310 130 0 0 chr6 120452621 120452690 -29064347 - MT2B LTR ERVL 0 533 465 1 1503 246 136 0 0 chr6 120452690 120452734 -29064303 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1503 601 265 127 108 chr6 120452741 120453042 -29063995 - MT2B LTR ERVL -73 528 168 1 1503 810 129 83 8 chr6 120453042 120453175 -29063862 - B1_Mus1 SINE Alu 0 148 6 1 1503 601 265 127 108 chr6 120453175 120453238 -29063799 - MT2B LTR ERVL -73 167 91 1 1503 2160 145 77 0 chr6 120453238 120453604 -29063433 + ORR1B1 LTR MaLR 1 394 0 1 1503 601 272 138 143 chr6 120453604 120453678 -29063359 - MT2B LTR ERVL -511 90 2 1 1503 752 83 27 20 chr6 120453887 120454034 -29063003 + (GAA)n Simple_repeat Simple_repeat 3 150 0 1 1503 297 0 0 0 chr6 120454371 120454404 -29062633 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1503 429 184 127 29 chr6 120454626 120454733 -29062304 + PB1 SINE Alu 10 125 -2 1 1503 566 280 45 0 chr6 120454827 120454959 -29062078 + ID_B1 SINE B4 84 221 -3 1 187 990 128 0 0 chr6 120455041 120455182 -29061855 - B1_Mus2 SINE Alu -1 146 6 1 1504 1165 106 36 21 chr6 120455245 120455437 -29061600 - B2_Mm2 SINE B2 0 195 1 1 1504 639 178 153 15 chr6 120455439 120455570 -29061467 - B1_Mur4 SINE Alu -1 149 1 1 1504 240 158 96 3 chr6 120455577 120455632 -29061405 - B1_Mur2 SINE Alu 0 149 87 1 1504 683 233 20 7 chr6 120456105 120456256 -29060781 - B3 SINE B2 -28 188 36 1 1504 455 272 24 42 chr6 120456519 120456684 -29060353 + RSINE1 SINE B4 4 165 0 1 1504 632 252 7 0 chr6 120456709 120456852 -29060185 + B4A SINE B4 86 229 -63 1 1504 768 192 136 38 chr6 120456847 120457031 -29060006 + B3 SINE B2 12 213 -3 1 1504 313 234 16 0 chr6 120457050 120457114 -29059923 + B4A SINE B4 218 282 -10 1 1504 301 280 110 0 chr6 120457244 120457344 -29059693 + ID_B1 SINE B4 114 224 0 1 1504 1068 115 0 13 chr6 120457349 120457499 -29059538 + B1_Mus1 SINE Alu 1 148 0 1 1504 222 245 0 70 chr6 120457547 120457604 -29059433 + ID4 SINE ID 16 68 -15 1 1504 637 240 20 27 chr6 120457771 120457921 -29059116 - RSINE1 SINE B4 -15 150 2 1 1504 313 234 16 0 chr6 120458120 120458184 -29058853 - B4A SINE B4 -10 282 218 1 1504 798 98 0 0 chr6 120458424 120458536 -29058501 + B2_Mm2 SINE B2 1 112 -83 1 1504 247 277 97 103 chr6 120458536 120458569 -29058468 + B4A SINE B4 1 144 -148 1 1504 383 216 14 0 chr6 120458790 120458864 -29058173 + ID_B1 SINE B4 80 154 -70 1 1504 201 147 0 0 chr6 120458877 120458911 -29058126 + (GGGGA)n Simple_repeat Simple_repeat 5 38 0 1 1504 24 0 0 0 chr6 120458994 120459018 -29058019 + AT_rich Low_complexity Low_complexity 1 24 0 1 1504 470 265 20 0 chr6 120459018 120459120 -29057917 - PB1D10 SINE Alu -1 116 13 1 1504 25 0 0 0 chr6 120459529 120459554 -29057483 + AT_rich Low_complexity Low_complexity 1 25 0 1 1504 761 173 29 7 chr6 120459720 120459860 -29057177 + B1_Mur2 SINE Alu 1 143 -6 1 1504 187 283 50 93 chr6 120459883 120460023 -29057014 - MIRm SINE MIR -142 134 1 1 1504 672 224 26 26 chr6 120461052 120461208 -29055829 - RSINE1 SINE B4 -8 157 2 1 1504 278 312 20 59 chr6 120461667 120461769 -29055268 + MLT1J LTR MaLR 243 340 -172 1 1504 502 254 17 50 chr6 120461949 120462069 -29054968 + B1_Mur1 SINE Alu 2 117 -32 1 1504 21 0 0 0 chr6 120462215 120462236 -29054801 + AT_rich Low_complexity Low_complexity 1 21 0 1 1504 1225 43 0 0 chr6 120462238 120462379 -29054658 - B1_Mus2 SINE Alu -5 142 2 1 1504 315 274 68 10 chr6 120462889 120462992 -29054045 - B1F SINE Alu 0 149 41 1 1504 594 236 34 14 chr6 120463041 120463187 -29053850 + B1F1 SINE Alu 1 149 0 1 1504 1617 141 235 0 chr6 120463323 120463642 -29053395 + ORR1B1 LTR MaLR 1 394 0 1 1504 207 250 0 0 chr6 120463777 120463821 -29053216 + GA-rich Low_complexity Low_complexity 4 47 0 1 1504 230 295 59 59 chr6 120464953 120465072 -29051965 + MIRc SINE MIR 30 148 -60 1 1504 297 298 24 140 chr6 120465077 120465327 -29051710 + ID_B1 SINE B4 1 221 -3 1 1504 248 184 0 58 chr6 120465327 120465379 -29051658 + PB1D7 SINE Alu 71 119 -1 1 1504 873 229 30 40 chr6 120465383 120465583 -29051454 + B3A SINE B2 1 198 0 1 1504 423 283 7 46 chr6 120465585 120465607 -29051430 + ID_B1 SINE B4 76 221 -3 1 1504 733 146 39 0 chr6 120465607 120465737 -29051300 + B1_Mur2 SINE Alu 14 148 -1 1 1504 21 36 0 0 chr6 120465737 120465765 -29051272 + AT_rich Low_complexity Low_complexity 1 28 0 1 1504 947 190 62 39 chr6 120465927 120466135 -29050902 - B3 SINE B2 -1 215 3 1 1504 987 123 20 20 chr6 120466227 120466376 -29050661 + B1_Mur4 SINE Alu 1 149 -1 1 1504 373 257 53 35 chr6 120466609 120466722 -29050315 - PB1D10 SINE Alu -1 116 2 1 1504 226 260 64 13 chr6 120467905 120467983 -29049054 + ID4 SINE ID 2 83 0 1 1504 245 200 20 0 chr6 120468892 120468942 -29048095 + RMER15 LTR ERVL 1 51 -524 1 1504 242 225 99 0 chr6 120469160 120469231 -29047806 + RMER15 LTR ERVL 498 575 0 1 1504 389 289 44 0 chr6 120469736 120469850 -29047187 - RSINE1 SINE B4 -46 119 1 1 1504 373 211 30 109 chr6 120470000 120470101 -29046936 - RSINE1 SINE B4 -36 129 37 1 1504 260 195 338 0 chr6 120470166 120470243 -29046794 + MTEa LTR MaLR 18 120 -259 1 1504 584 296 114 4 chr6 120470265 120470492 -29046545 + MT2A LTR ERVL 270 521 -12 1 1504 309 306 82 48 chr6 120470741 120470777 -29046260 + CYRA11_Mm Unknown Y-chromosome 134 176 -441 1 1504 1155 174 38 10 chr6 120470777 120470986 -29046051 - URR1A DNA MER1_type 0 226 12 1 1504 224 299 48 83 chr6 120471503 120471587 -29045450 + ID4_ SINE ID 3 83 0 1 1504 1071 92 13 0 chr6 120471690 120471843 -29045194 + B2_Mm2 SINE B2 1 155 -40 1 1504 659 191 232 72 chr6 120472034 120472271 -29044766 - B4A SINE B4 -17 275 1 1 1504 269 237 8 17 chr6 120472321 120472398 -29044639 - B1_Mur1 SINE Alu -2 147 41 1 1504 210 242 152 0 chr6 120472672 120472738 -29044299 - PB1D10 SINE Alu -2 115 40 1 1504 593 233 193 0 chr6 120472832 120473008 -29044029 + ID_B1 SINE B4 12 221 -3 1 1504 371 315 18 18 chr6 120473097 120473207 -29043830 - ID_B1 SINE B4 -114 110 1 1 1504 321 268 85 0 chr6 120473767 120473849 -29043188 - BC1_Mm scRNA scRNA -54 98 10 1 1504 474 250 125 0 chr6 120473947 120474075 -29042962 + B1F1 SINE Alu 6 149 0 1 1504 1350 77 16 22 chr6 120474104 120474289 -29042748 + B2_Mm2 SINE B2 2 185 -10 1 1504 859 212 119 5 chr6 120474475 120474660 -29042377 - B3 SINE B2 -10 206 1 1 1504 495 286 56 0 chr6 120474718 120474844 -29042193 - B1_Mur1 SINE Alu -9 140 8 1 1504 413 216 49 0 chr6 120474914 120475016 -29042021 + U6 snRNA snRNA 1 107 0 1 1504 384 302 161 104 chr6 120475227 120475438 -29041599 + ID_B1 SINE B4 1 223 -1 1 1504 940 139 14 7 chr6 120475678 120475823 -29041214 - B1_Mus2 SINE Alu 0 147 2 1 1504 207 0 0 0 chr6 120475983 120476006 -29041031 + (GGA)n Simple_repeat Simple_repeat 2 24 0 1 1504 476 202 0 11 chr6 120476010 120476100 -29040937 + B1_Mur1 SINE Alu 59 147 -2 1 1504 25 0 0 0 chr6 120476282 120476307 -29040730 + AT_rich Low_complexity Low_complexity 1 25 0 1 1504 305 260 0 5 chr6 120476310 120476382 -29040655 + ID4_ SINE ID 3 72 -11 1 1504 621 164 18 0 chr6 120476415 120476525 -29040512 - PB1D9 SINE Alu 0 120 9 1 1504 441 160 228 32 chr6 120476525 120476538 -29040499 - ID_B1 SINE B4 0 224 78 1 1504 309 180 297 22 chr6 120476747 120476838 -29040199 + PB1D9 SINE Alu 5 120 0 1 1504 418 306 46 0 chr6 120477141 120477249 -29039788 + PB1D10 SINE Alu 1 113 -4 1 1504 257 312 53 9 chr6 120477251 120477364 -29039673 + RSINE1 SINE B4 4 121 -44 1 1504 1111 52 0 0 chr6 120477948 120478083 -29038954 + B1_Mus1 SINE Alu 13 147 -1 1 1504 796 243 25 6 chr6 120478442 120478633 -29038404 + B3A SINE B2 16 203 -13 1 1504 1153 88 0 20 chr6 120479065 120479216 -29037821 + B1_Mus1 SINE Alu 1 148 0 1 1504 225 0 0 0 chr6 120479217 120479242 -29037795 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1504 351 218 146 46 chr6 120480193 120480323 -29036714 + B1F2 SINE Alu 4 146 -3 1 1504 281 233 154 10 chr6 120480608 120480712 -29036325 + RSINE1 SINE B4 6 124 -41 1 1504 369 0 0 0 chr6 120480765 120480806 -29036231 + (ATG)n Simple_repeat Simple_repeat 2 42 0 1 1504 261 0 0 0 chr6 120482372 120482401 -29034636 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1504 287 204 37 0 chr6 120482449 120482503 -29034534 + B1F SINE Alu 9 64 -85 1 1504 189 0 0 0 chr6 120482518 120482539 -29034498 + (ATG)n Simple_repeat Simple_repeat 2 22 0 1 1504 1329 80 26 31 chr6 120482853 120483046 -29033991 - B2_Mm1a SINE B2 0 193 2 1 1504 228 111 0 0 chr6 120483076 120483112 -29033925 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1504 826 167 0 0 chr6 120483123 120483255 -29033782 + B1_Mus1 SINE Alu 5 136 -12 1 1504 313 93 351 35 chr6 120483419 120483530 -29033507 - B2_Mm2 SINE B2 -3 192 47 1 1504 1200 103 40 0 chr6 120483594 120483768 -29033269 - B2_Mm1t SINE B2 -12 181 1 1 1504 382 261 214 33 chr6 120483787 120483969 -29033068 - B3 SINE B2 0 216 2 1 1504 224 162 0 75 chr6 120484074 120484114 -29032923 - B1_Mus1 SINE Alu -110 38 2 1 1504 510 264 34 25 chr6 120484115 120484252 -29032785 - B1_Mur1 SINE Alu -1 148 2 1 1504 475 232 49 11 chr6 120484366 120484517 -29032520 + B3 SINE B2 36 198 0 1 1504 336 200 0 0 chr6 120484789 120484859 -29032178 + CT-rich Low_complexity Low_complexity 2 71 0 1 1504 557 228 0 0 chr6 120484928 120485020 -29032017 + RSINE1 SINE B4 48 139 -26 1 1504 336 48 0 0 chr6 120485021 120485063 -29031974 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1504 696 182 298 18 chr6 120485093 120485261 -29031776 + B3 SINE B2 2 216 0 1 1504 972 99 8 0 chr6 120485281 120485412 -29031625 + B1_Mus2 SINE Alu 2 133 -14 1 1504 424 216 114 0 chr6 120485413 120485501 -29031536 + B3A SINE B2 41 138 -60 1 1504 3756 139 56 50 chr6 120485506 120486181 -29030856 - RMER13A LTR ERVK -181 679 1 1 1504 490 117 304 16 chr6 120486337 120486462 -29030575 - B2_Mm2 SINE B2 -8 187 27 1 1504 943 119 86 53 chr6 120486470 120486657 -29030380 - B2_Mm2 SINE B2 0 195 3 1 1504 974 102 14 35 chr6 120486690 120486833 -29030204 - B1_Mus1 SINE Alu 0 148 9 1 1504 270 288 52 91 chr6 120486730 120486841 -29030196 - ORR1B1-int LTR MaLR -750 759 645 1 1504 1491 65 16 0 chr6 120486841 120487026 -29030011 - B2_Mm2 SINE B2 -6 189 2 1 1504 270 288 52 91 chr6 120487026 120487124 -29029913 - ORR1B1-int LTR MaLR -865 644 558 1 1504 407 199 8 0 chr6 120487202 120487298 -29029739 + B1_Mus2 SINE Alu 15 112 -36 1 1504 621 0 0 0 chr6 120487527 120487596 -29029441 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1504 1138 79 0 0 chr6 120487692 120487832 -29029205 + B1_Mm SINE Alu 1 140 -7 1 1504 1174 71 0 0 chr6 120487966 120488107 -29028930 + B1_Mus2 SINE Alu 1 141 -6 1 1504 423 0 0 0 chr6 120488110 120488157 -29028880 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1504 442 246 79 87 chr6 120488172 120488319 -29028718 - L1_Mur3 LINE L1 -1524 4622 4441 1 1504 833 206 194 0 chr6 120488319 120488499 -29028538 - B3 SINE B2 0 216 2 1 1504 442 235 75 101 chr6 120488499 120488573 -29028464 - L1_Mur3 LINE L1 -1440 4440 4372 1 1504 1208 105 0 0 chr6 120488634 120488796 -29028241 - B2_Mm2 SINE B2 -32 163 2 1 1504 384 290 0 133 chr6 120488841 120488984 -29028053 - RSINE1 SINE B4 0 165 42 1 1504 591 276 10 35 chr6 120488996 120489199 -29027838 - L1_Mur3 LINE L1 -1529 4351 4154 1 1504 481 167 80 11 chr6 120490417 120490516 -29026521 + MTC LTR MaLR 1 107 -300 1 1504 651 112 0 0 chr6 120490522 120490620 -29026417 + (TTCTC)n Simple_repeat Simple_repeat 2 99 0 1 1504 486 226 0 11 chr6 120490638 120490732 -29026305 - B1_Mus2 SINE Alu -8 139 47 1 1504 1496 154 114 48 chr6 120490694 120490741 -29026296 + MTC LTR MaLR 65 101 -318 1 1504 189 0 0 0 chr6 120490741 120490762 -29026275 + (CCA)n Simple_repeat Simple_repeat 2 22 0 1 1504 1679 121 131 4 chr6 120490762 120491047 -29025990 + MTC LTR MaLR 102 421 0 1 1504 689 197 16 32 chr6 120491783 120491909 -29025128 - B1_Mur1 SINE Alu -1 148 25 1 1504 260 27 27 0 chr6 120491918 120491955 -29025082 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1504 500 284 7 28 chr6 120491964 120492109 -29024928 - ID_B1 SINE B4 -2 222 81 1 1504 463 272 79 48 chr6 120492176 120492365 -29024672 + B3A SINE B2 4 198 0 1 1504 423 0 0 0 chr6 120492379 120492426 -29024611 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1504 792 190 7 0 chr6 120492426 120492563 -29024474 - B1_Mur2 SINE Alu -11 138 1 1 1504 234 0 0 0 chr6 120492575 120492601 -29024436 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1504 704 214 28 21 chr6 120492896 120493039 -29023998 + B1_Mur3 SINE Alu 6 149 0 1 1504 297 310 96 1 chr6 120493079 120493185 -29023852 + B1F SINE Alu 4 115 -2 1 1504 2980 113 87 94 chr6 120493419 120494004 -29023033 + RMER4B LTR ERVK 5 585 0 1 1504 198 0 0 0 chr6 120494169 120494191 -29022846 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1504 1111 74 0 0 chr6 120494201 120494336 -29022701 - B1_Mus2 SINE Alu -12 135 1 1 1504 25 0 0 0 chr6 120494341 120494366 -29022671 + AT_rich Low_complexity Low_complexity 1 25 0 1 1504 546 277 24 30 chr6 120494373 120494537 -29022500 - RSINE1 SINE B4 0 165 3 1 1504 1300 198 67 67 chr6 120494961 120495099 -29021938 - Lx7 LINE L1 -1283 6413 6288 1 1504 1451 49 49 0 chr6 120495099 120495282 -29021755 - B2_Mm1t SINE B2 0 193 2 1 1504 1300 198 67 67 chr6 120495282 120495363 -29021674 - Lx7 LINE L1 -1409 6287 6209 1 1504 4498 39 2 0 chr6 120495363 120495874 -29021163 - LTRIS3 LTR ERV1 0 512 1 1 1504 1300 198 67 67 chr6 120495874 120496010 -29021027 - Lx7 LINE L1 -1488 6208 6057 1 1504 1823 228 42 25 chr6 120496019 120496500 -29020537 - RLTR16 LTR ERVK -13 492 4 1 1504 829 265 19 34 chr6 120496507 120496653 -29020384 - Lx7 LINE L1 -1633 6063 5918 1 1504 1722 26 0 0 chr6 120496653 120496845 -29020192 - B2_Mm1a SINE B2 -1 192 1 1 1504 829 265 19 34 chr6 120496845 120497022 -29020015 - Lx7 LINE L1 -1779 5917 5745 1 1504 232 167 48 0 chr6 120497056 120497098 -29019939 + B3 SINE B2 145 188 -28 1 1504 286 196 18 0 chr6 120497137 120497193 -29019844 + MTE2b LTR MaLR 322 378 -1 1 1504 211 289 0 192 chr6 120497301 120497421 -29019616 - PB1D10 SINE Alu -20 97 1 1 1504 775 236 0 79 chr6 120497421 120497507 -29019530 - B4A SINE B4 -221 71 1 1 1504 900 145 20 20 chr6 120497643 120497791 -29019246 + B1_Mur4 SINE Alu 3 150 0 1 1504 303 322 8 25 chr6 120498142 120498263 -29018774 + GA-rich Low_complexity Low_complexity 1 119 0 1 1504 537 182 47 105 chr6 120498356 120498490 -29018547 + RSINE1 SINE B4 4 131 -34 1 1504 303 71 0 0 chr6 120498490 120498532 -29018505 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1504 537 182 47 105 chr6 120498532 120498569 -29018468 + RSINE1 SINE B4 132 165 0 1 1504 307 231 76 107 chr6 120498597 120498728 -29018309 - LTR77 LTR ERV1 -35 587 461 1 1504 299 237 79 0 chr6 120498982 120499079 -29017958 - B1F1 SINE Alu -17 110 1 1 1504 330 252 38 105 chr6 120499204 120499337 -29017700 + MT2B2 LTR ERVL 142 265 -319 1 1504 583 157 57 29 chr6 120499238 120499343 -29017694 + B1_Mur3 SINE Alu 9 116 -33 1 1504 1055 157 73 5 chr6 120499365 120499557 -29017480 + B3 SINE B2 2 206 -10 1 1504 490 286 35 57 chr6 120499586 120499727 -29017310 - ID_B1 SINE B4 0 224 87 1 1504 395 197 0 66 chr6 120499660 120499736 -29017301 - PB1D10 SINE Alu -45 72 2 1 1504 234 0 0 0 chr6 120499803 120499829 -29017208 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1504 238 167 61 20 chr6 120499945 120499994 -29017043 + B1F1 SINE Alu 1 51 -98 1 1504 488 149 0 0 chr6 120500003 120500077 -29016960 + B1_Mur1 SINE Alu 68 141 -8 1 1504 219 36 0 0 chr6 120500092 120500120 -29016917 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 2 1504 216 0 0 0 chr6 120501074 120501098 -29015939 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1504 302 139 0 0 chr6 120501114 120501157 -29015880 + PB1D9 SINE Alu 12 54 -66 4 1504 244 281 16 0 chr6 120501157 120501178 -29015859 + ID_B1 SINE B4 93 157 -67 5 1504 419 230 6 0 chr6 120501181 120501346 -29015691 + (CAGG)n Simple_repeat Simple_repeat 2 167 0 6 1504 522 197 0 0 chr6 120501389 120501521 -29015516 + GA-rich Low_complexity Low_complexity 2 133 0 7 1504 362 174 172 11 chr6 120501534 120501627 -29015410 + B1_Mur2 SINE Alu 41 148 -1 8 1504 291 233 209 11 chr6 120502537 120502628 -29014409 + B4 SINE B4 108 216 -76 9 1504 567 207 30 89 chr6 120502631 120502779 -29014258 + B1_Mur3 SINE Alu 1 140 -9 1 1504 1146 72 0 0 chr6 120502790 120502943 -29014094 + (TAGA)n Simple_repeat Simple_repeat 2 154 0 1 1504 22 70 0 0 chr6 120502953 120502996 -29014041 + AT_rich Low_complexity Low_complexity 1 43 0 1 1504 462 271 23 0 chr6 120503146 120503279 -29013758 - ID_B1 SINE B4 -87 137 2 1 1504 1200 150 12 62 chr6 120503449 120503691 -29013346 - RLTR23 LTR ERV1 -51 379 150 1 1504 339 267 70 0 chr6 120503707 120503793 -29013244 - B4A SINE B4 -199 93 2 1 1504 183 80 0 0 chr6 120504124 120504149 -29012888 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1 1504 585 199 14 87 chr6 120504149 120504276 -29012761 - B1F SINE Alu -13 136 17 1 1504 241 298 35 23 chr6 120504351 120504437 -29012600 - RSINE1 SINE B4 0 165 79 1 1504 711 215 316 70 chr6 120504419 120504691 -29012346 + RMER21A LTR ERV1 554 892 -55 1 1504 678 217 16 0 chr6 120505229 120505358 -29011679 + B1_Mur4 SINE Alu 1 131 -19 2 1504 189 0 0 0 chr6 120505384 120505405 -29011632 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1504 245 154 18 71 chr6 120505416 120505472 -29011565 + ORR1D2 LTR MaLR 318 370 0 2 1504 2141 88 52 12 chr6 120506710 120507043 -29009994 - BGLII_B LTR ERVK 0 441 93 2 1504 396 0 0 0 chr6 120507043 120507087 -29009950 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 2 1504 1672 47 0 0 chr6 120507258 120507451 -29009586 - B2_Mm1t SINE B2 0 193 1 2 1504 333 352 25 46 chr6 120507828 120508111 -29008926 + MER52-int LTR ERV1 2041 2317 -4774 2 1504 842 184 7 0 chr6 120508768 120508909 -29008128 - B1_Mus1 SINE Alu -6 142 1 2 1504 263 228 53 0 chr6 120509312 120509369 -29007668 + ID4_ SINE ID 24 83 0 2 1504 1189 176 81 0 chr6 120509980 120510201 -29006836 - RMER19B LTR ERVK -663 239 1 2 1504 805 170 7 66 chr6 120510271 120510422 -29006615 + B1_Mur4 SINE Alu 2 143 -7 3 1504 21 0 0 0 chr6 120510430 120510451 -29006586 + AT_rich Low_complexity Low_complexity 1 21 0 3 1504 638 206 79 8 chr6 120510484 120510611 -29006426 + B1_Mur1 SINE Alu 5 140 -9 3 1504 519 31 0 0 chr6 120510611 120510676 -29006361 + (CAGAGA)n Simple_repeat Simple_repeat 4 68 0 3 1504 468 228 11 0 chr6 120510678 120510770 -29006267 + RSINE1 SINE B4 27 119 -46 3 1504 243 0 0 0 chr6 120510770 120510797 -29006240 + (CAGA)n Simple_repeat Simple_repeat 3 29 0 3 1504 385 268 0 0 chr6 120511379 120511461 -29005576 - ID_B1 SINE B4 -2 222 141 3 1504 369 0 0 0 chr6 120511468 120511509 -29005528 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1504 235 191 43 0 chr6 120511557 120511604 -29005433 - MTEb LTR MaLR -12 367 319 3 1504 1192 55 7 0 chr6 120511613 120511759 -29005278 + B1_Mus1 SINE Alu 2 148 0 3 1504 766 168 64 28 chr6 120511856 120511997 -29005040 + B1_Mus1 SINE Alu 2 147 -1 4 1504 482 157 12 12 chr6 120512009 120512093 -29004944 - MTC LTR MaLR 0 421 338 4 1504 431 252 40 0 chr6 120512085 120512184 -29004853 + B1F1 SINE Alu 31 133 -16 4 1504 452 277 23 45 chr6 120512642 120512792 -29004245 + MTE2b LTR MaLR 253 405 -14 4 1504 199 71 48 0 chr6 120513119 120513161 -29003876 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4 1504 1144 74 0 0 chr6 120513162 120513297 -29003740 - B1_Mus1 SINE Alu -12 136 2 4 1504 1334 124 0 5 chr6 120513299 120513493 -29003544 - B2_Mm2 SINE B2 -1 194 2 4 1504 981 196 44 20 chr6 120513496 120513699 -29003338 - B3 SINE B2 -6 210 3 4 1504 264 324 19 29 chr6 120513701 120513806 -29003231 - PB1D10 SINE Alu -8 109 6 4 1504 811 204 39 109 chr6 120513809 120513916 -29003121 + ORR1B1 LTR MaLR 1 153 -241 4 1504 522 0 0 0 chr6 120513916 120513974 -29003063 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 5 1504 342 0 0 0 chr6 120513977 120514015 -29003022 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1504 811 193 46 117 chr6 120514015 120514163 -29002874 + ORR1B1 LTR MaLR 154 285 -109 4 1504 305 257 29 0 chr6 120514338 120514474 -29002563 + (CA)n Simple_repeat Simple_repeat 1 140 0 5 1504 688 218 6 6 chr6 120514488 120514668 -29002369 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1504 318 273 106 70 chr6 120514726 120514868 -29002169 + B1_Mm SINE Alu 1 147 0 5 1504 227 114 0 22 chr6 120514871 120514916 -29002121 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 5 1504 2325 33 0 11 chr6 120514997 120515274 -29001763 - L1_Mus1 LINE L1 -2 6565 6292 5 1504 214 294 132 0 chr6 120515517 120515585 -29001452 - ID4 SINE ID -2 81 5 5 1504 212 259 124 74 chr6 120515610 120515731 -29001306 + PB1 SINE Alu 1 127 0 5 1504 1252 54 0 0 chr6 120515879 120516026 -29001011 - B1_Mus1 SINE Alu 0 148 2 5 1504 1582 36 5 20 chr6 120516050 120516246 -29000791 - B2_Mm1a SINE B2 0 193 1 5 1504 531 225 64 14 chr6 120516277 120516417 -29000620 - B1_Mur2 SINE Alu 0 149 3 6 1504 190 343 30 0 chr6 120516553 120516620 -29000417 + L3b LINE CR1 411 479 -3 6 1504 252 232 116 0 chr6 120516730 120516799 -29000238 - ID4 SINE ID -5 78 2 6 1504 460 254 13 72 chr6 120516823 120516976 -29000061 - B1F SINE Alu -1 148 5 6 1504 23 0 0 0 chr6 120517241 120517264 -28999773 + AT_rich Low_complexity Low_complexity 1 23 0 6 1504 653 198 8 31 chr6 120518131 120518261 -28998776 + B3 SINE B2 2 128 -88 6 1504 969 104 83 0 chr6 120518295 120518439 -28998598 - B2_Mm2 SINE B2 -38 157 2 6 1504 22 0 0 0 chr6 120518439 120518461 -28998576 + AT_rich Low_complexity Low_complexity 1 22 0 6 1504 325 135 0 19 chr6 120518534 120518587 -28998450 - ID_B1 SINE B4 -46 178 127 6 1504 228 255 40 216 chr6 120518587 120518652 -28998385 - PB1D7 SINE Alu -13 98 5 6 1504 238 241 56 0 chr6 120518599 120518653 -28998384 - ID SINE ID -160 64 8 7 1504 218 329 29 0 chr6 120518716 120518786 -28998251 + L2b LINE L2 3293 3364 -11 7 1504 1156 59 0 0 chr6 120519055 120519191 -28997846 + B1_Mus1 SINE Alu 2 137 -11 7 1504 254 0 83 0 chr6 120519192 120519228 -28997809 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 7 1504 635 243 7 56 chr6 120519311 120519455 -28997582 - B1F2 SINE Alu -6 143 7 7 1504 243 61 0 0 chr6 120519482 120519515 -28997522 + (TC)n Simple_repeat Simple_repeat 1 33 0 7 1504 435 287 33 0 chr6 120519755 120519877 -28997160 - ID_B1 SINE B4 -31 193 68 7 1504 237 33 0 0 chr6 120519879 120519909 -28997128 + (TTG)n Simple_repeat Simple_repeat 2 31 0 7 1504 886 158 7 33 chr6 120520072 120520223 -28996814 + B1_Mur4 SINE Alu 4 150 0 7 1504 279 0 0 0 chr6 120520411 120520442 -28996595 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 7 1504 406 147 0 0 chr6 120520467 120520535 -28996502 - B3 SINE B2 -148 68 1 8 1504 455 250 0 27 chr6 120520740 120520851 -28996186 - PB1D7 SINE Alu -12 108 1 8 1504 261 111 44 209 chr6 120520859 120520950 -28996087 - MT2B2 LTR ERVL -334 250 175 8 1504 415 162 12 119 chr6 120520871 120520955 -28996082 - B1_Mur4 SINE Alu -69 81 7 8 1504 789 90 0 0 chr6 120520956 120521067 -28995970 + (TTCC)n Simple_repeat Simple_repeat 3 113 0 8 1504 351 0 0 0 chr6 120521561 120521600 -28995437 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1504 333 315 18 9 chr6 120521601 120521710 -28995327 + ID_B1 SINE B4 106 215 -9 8 1504 420 37 0 0 chr6 120521711 120521765 -28995272 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 8 1504 1098 192 95 151 chr6 120521868 120521881 -28995156 + RLTR18B LTR ERVK 49 61 -451 8 1504 342 0 0 0 chr6 120521881 120521919 -28995118 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1504 1098 192 95 151 chr6 120521919 120522242 -28994795 + RLTR18B LTR ERVK 62 365 -147 8 1504 520 306 8 0 chr6 120522684 120522805 -28994232 - RSINE1 SINE B4 -31 134 13 9 1504 274 274 52 52 chr6 120522737 120522814 -28994223 - B3A SINE B2 -119 79 3 9 1504 616 250 117 22 chr6 120522849 120523029 -28994008 + B3A SINE B2 2 198 0 9 1504 1233 48 7 0 chr6 120523069 120523215 -28993822 + B1_Mm SINE Alu 1 147 0 9 1504 1061 110 0 27 chr6 120523234 120523384 -28993653 + B1_Mus1 SINE Alu 3 148 0 9 1504 8212 169 80 34 chr6 120523747 120525450 -28991587 + RodERV21-int LTR ERV1 2867 4648 -343 9 1504 2246 167 35 20 chr6 120525450 120525848 -28991189 - MTB_Mm LTR MaLR 0 407 4 9 1504 8212 169 80 34 chr6 120525848 120525864 -28991173 + RodERV21-int LTR ERV1 4649 4666 -325 9 1504 1129 86 86 6 chr6 120525866 120526029 -28991008 - B2_Mm2 SINE B2 -19 176 1 9 1504 869 176 0 21 chr6 120526040 120526185 -28990852 - B1_Mur4 SINE Alu -7 143 2 9 1504 886 155 0 20 chr6 120526189 120526340 -28990697 - B1_Mus1 SINE Alu 0 148 1 9 1504 849 160 29 23 chr6 120526345 120526518 -28990519 + RodERV21-int LTR ERV1 4648 4821 -170 9 1504 481 259 9 26 chr6 120526518 120526633 -28990404 + RMER4B LTR ERVK 342 454 -131 1 1504 313 268 42 161 chr6 120526652 120526888 -28990149 + RMER21B LTR ERV1 1 208 -634 1 1504 649 163 183 39 chr6 120527021 120527174 -28989863 + B2_Mm2 SINE B2 2 176 -19 1 1504 230 81 27 0 chr6 120527174 120527211 -28989826 + (GGAGAA)n Simple_repeat Simple_repeat 3 40 0 1 1504 1114 107 0 11 chr6 120527212 120527391 -28989646 + (GAA)n Simple_repeat Simple_repeat 3 179 0 1 1504 558 29 0 0 chr6 120527797 120527865 -28989172 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1504 199 216 0 39 chr6 120527897 120527974 -28989063 + (TGG)n Simple_repeat Simple_repeat 1 74 0 1 1504 698 273 73 34 chr6 120527979 120528123 -28988914 + B3 SINE B2 1 149 -67 1 1504 332 77 0 19 chr6 120528123 120528176 -28988861 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1504 698 273 73 34 chr6 120528176 120528236 -28988801 + B3 SINE B2 150 213 -3 1 1504 411 222 95 15 chr6 120528463 120528600 -28988437 + B1F SINE Alu 2 149 0 1 1504 429 184 26 0 chr6 120528606 120528682 -28988355 + ID4 SINE ID 2 79 -4 1 1504 198 0 0 0 chr6 120529276 120529298 -28987739 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1504 639 0 0 0 chr6 120530568 120530639 -28986398 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1504 252 0 0 0 chr6 120531766 120531794 -28985243 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1504 22 35 0 0 chr6 120531812 120531841 -28985196 + AT_rich Low_complexity Low_complexity 1 29 0 1 1504 180 0 0 0 chr6 120531867 120531887 -28985150 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1504 836 144 53 64 chr6 120531892 120532063 -28984974 - B2_Mm2 SINE B2 -23 172 4 1 1504 558 156 95 32 chr6 120532065 120532191 -28984846 - B1_Mur1 SINE Alu -2 147 14 1 1504 1026 182 33 42 chr6 120532197 120532409 -28984628 - B3 SINE B2 -6 210 1 1 1504 715 212 112 29 chr6 120532654 120532824 -28984213 + B3 SINE B2 33 216 0 1 1504 312 234 38 113 chr6 120533172 120533278 -28983759 + MT2B LTR ERVL 167 264 -337 1 1504 858 106 0 16 chr6 120533190 120533315 -28983722 + B1_Mus1 SINE Alu 26 148 0 1 1504 233 245 0 0 chr6 120533392 120533445 -28983592 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 1 1504 1523 208 73 78 chr6 120533470 120533878 -28983159 - MTD LTR MaLR -12 407 3 1 1504 1154 50 50 0 chr6 120534067 120534207 -28982830 - B1_Mus1 SINE Alu 0 148 2 1 1504 591 340 62 23 chr6 120534225 120534484 -28982553 + B4 SINE B4 24 292 0 1 1504 320 227 178 34 chr6 120534695 120534714 -28982323 + L1MEe LINE L1 665 685 -4169 1 1504 1213 54 0 7 chr6 120534714 120534863 -28982174 + B1_Mus1 SINE Alu 1 148 0 1 1504 320 227 178 34 chr6 120534863 120534911 -28982126 + L1MEe LINE L1 686 740 -4114 1 1504 1699 21 5 0 chr6 120534911 120535103 -28981934 + B2_Mm1t SINE B2 1 193 0 1 1504 320 227 178 34 chr6 120535103 120535180 -28981857 + L1MEe LINE L1 741 829 -4025 1 1504 308 307 0 11 chr6 120535687 120535776 -28981261 - ID SINE ID -136 88 1 1 1504 459 233 164 38 chr6 120536461 120536522 -28980515 + ID_B1 SINE B4 10 215 -9 1 1504 874 100 0 16 chr6 120536522 120536644 -28980393 + B1_Mus1 SINE Alu 20 139 -9 1 1504 207 0 0 0 chr6 120536644 120536667 -28980370 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1504 348 212 20 12 chr6 120536670 120536757 -28980280 + ORR1D2 LTR MaLR 153 241 -133 1 1504 437 18 0 34 chr6 120536777 120536836 -28980201 + (TTTTC)n Simple_repeat Simple_repeat 2 58 0 1 1504 950 243 50 31 chr6 120536891 120537214 -28979823 - RLTR15 LTR ERVK -30 329 1 1 1504 450 227 34 11 chr6 120537218 120537307 -28979730 - B1_Mur2 SINE Alu -55 94 4 1 1504 315 109 319 35 chr6 120537322 120537435 -28979602 - B2_Mm2 SINE B2 -1 194 50 1 1504 407 247 154 51 chr6 120537398 120537484 -28979553 + ORR1D2 LTR MaLR 178 262 -108 1 1504 1317 102 11 0 chr6 120537484 120537660 -28979377 - B2_Mm1t SINE B2 -14 179 2 1 1504 407 247 154 51 chr6 120537660 120537748 -28979289 + ORR1D2 LTR MaLR 263 370 0 1 1504 352 118 0 32 chr6 120537817 120537927 -28979110 - B2_Mm2 SINE B2 -4 191 47 1 1504 968 166 7 0 chr6 120538032 120538177 -28978860 + B1_Mur4 SINE Alu 5 150 0 1 1504 1132 89 0 7 chr6 120538206 120538353 -28978684 + B1_Mus1 SINE Alu 3 148 0 1 1504 240 176 0 0 chr6 120538354 120538383 -28978654 + A-rich Low_complexity Low_complexity 1 29 0 1 1504 1190 61 7 7 chr6 120538383 120538531 -28978506 + B1_Mus1 SINE Alu 1 148 0 1 1504 240 176 0 0 chr6 120538531 120538552 -28978485 + A-rich Low_complexity Low_complexity 30 50 0 1 1504 667 207 0 8 chr6 120538619 120538736 -28978301 - PB1D7 SINE Alu 0 120 5 1 1504 273 238 115 81 chr6 120538760 120538847 -28978190 - B1F SINE Alu -48 101 12 1 1504 754 180 79 0 chr6 120539216 120539355 -28977682 - B1_Mur4 SINE Alu 0 150 1 1 1504 374 286 20 0 chr6 120539447 120539545 -28977492 - RSINE1 SINE B4 -22 143 44 1 1504 868 145 72 0 chr6 120539612 120539750 -28977287 + B1_Mus1 SINE Alu 1 148 0 1 1504 1159 48 7 20 chr6 120539892 120540041 -28976996 + B1_Mus2 SINE Alu 1 147 0 1 1504 216 0 0 0 chr6 120540041 120540065 -28976972 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1504 449 124 31 10 chr6 120540088 120540186 -28976851 + CT-rich Low_complexity Low_complexity 1 100 0 1 1504 484 255 0 0 chr6 120540720 120540822 -28976215 + B1_Mur1 SINE Alu 47 148 -1 1 1504 1191 77 0 0 chr6 120541049 120541192 -28975845 - B1_Mus2 SINE Alu -3 144 2 1 1504 988 169 46 6 chr6 120541444 120541617 -28975420 - B3 SINE B2 -7 209 30 1 1504 485 203 246 0 chr6 120541647 120541765 -28975272 - B1F2 SINE Alu -1 148 2 1 1504 284 208 0 0 chr6 120543241 120543294 -28973743 - ID_B1 SINE B4 -2 222 170 1 1504 180 179 0 0 chr6 120543294 120543333 -28973704 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1504 254 281 12 24 chr6 120543495 120543579 -28973458 - ID4 SINE ID 0 83 1 1 1504 483 321 0 21 chr6 120543636 120543779 -28973258 + B1F1 SINE Alu 2 141 -8 1 1504 225 282 129 57 chr6 120543786 120543841 -28973196 + ID_B1 SINE B4 84 135 -89 1 1504 1485 53 11 0 chr6 120543841 120544028 -28973009 + B2_Mm1a SINE B2 1 189 -4 1 1504 225 282 129 57 chr6 120544028 120544096 -28972941 + ID_B1 SINE B4 136 215 -9 1 1504 416 326 49 60 chr6 120544133 120544245 -28972792 + B4 SINE B4 103 215 -77 1 1504 1443 68 21 10 chr6 120544245 120544437 -28972600 + B2_Mm2 SINE B2 2 195 0 1 1504 416 326 49 60 chr6 120544437 120544507 -28972530 + B4 SINE B4 216 282 -10 1 1504 462 231 58 0 chr6 120544603 120544707 -28972330 - PB1 SINE Alu -13 114 5 1 1504 883 215 78 0 chr6 120544837 120545028 -28972009 + B3 SINE B2 7 212 -4 1 1504 327 49 0 0 chr6 120545070 120545111 -28971926 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1504 3362 36 8 0 chr6 120545189 120545581 -28971456 - MTA_Mm LTR MaLR 0 396 2 1 1504 1053 46 0 0 chr6 120545581 120545712 -28971325 + (TCTA)n Simple_repeat Simple_repeat 3 133 0 1 1504 1215 47 0 7 chr6 120545712 120545863 -28971174 - B2_Mm2 SINE B2 -40 155 6 1 1504 385 241 16 49 chr6 120545990 120546112 -28970925 + PB1D9 SINE Alu 1 118 -2 1 1504 636 301 79 50 chr6 120546857 120547137 -28969900 + MT2A LTR ERVL 112 399 -134 1 1504 1291 27 0 0 chr6 120547238 120547384 -28969653 + B1_Mus2 SINE Alu 2 147 0 1 1504 209 33 33 0 chr6 120547451 120547481 -28969556 + (TATG)n Simple_repeat Simple_repeat 3 33 0 1 1504 236 158 0 0 chr6 120547482 120547520 -28969517 + MLT2D LTR ERVL 521 558 -2 1 1504 327 229 68 63 chr6 120547677 120547868 -28969169 - RMER17C LTR ERVK -218 192 1 1 1504 467 274 24 8 chr6 120547868 120547991 -28969046 - ID_B1 SINE B4 -98 126 2 1 1504 402 194 27 0 chr6 120548980 120549060 -28967977 + B1F SINE Alu 16 103 -46 1 1504 250 230 12 98 chr6 120549197 120549279 -28967758 + PB1D10 SINE Alu 43 117 0 1 1504 645 241 102 68 chr6 120549557 120549598 -28967439 + B3 SINE B2 2 38 -178 1 1504 939 109 73 0 chr6 120549598 120549735 -28967302 + B1_Mus1 SINE Alu 2 148 0 1 1504 645 241 102 68 chr6 120549735 120549898 -28967139 + B3 SINE B2 39 213 -3 1 1504 513 0 0 0 chr6 120549944 120550001 -28967036 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1504 354 314 0 45 chr6 120550070 120550180 -28966857 - PB1D10 SINE Alu 0 117 13 1 1504 452 280 136 0 chr6 120550215 120550340 -28966697 - ID_B1 SINE B4 -1 223 82 1 1504 324 231 0 0 chr6 120550415 120550493 -28966544 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1504 857 178 7 14 chr6 120550555 120550703 -28966334 - RSINE1 SINE B4 -17 148 2 1 1504 282 131 11 43 chr6 120550825 120550917 -28966120 - B2_Mm2 SINE B2 -5 190 50 1 1504 1389 79 11 0 chr6 120550952 120551129 -28965908 - B2_Mm1t SINE B2 -14 179 1 1 1504 310 328 20 93 chr6 120551135 120551249 -28965788 - ID_B1 SINE B4 -46 178 76 1 1504 218 32 0 31 chr6 120551249 120551281 -28965756 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1 1504 310 328 20 93 chr6 120551281 120551317 -28965720 - ID SINE ID -149 75 39 1 1504 760 305 5 16 chr6 120551331 120551521 -28965516 - ID_B1 SINE B4 0 224 37 1 1504 1093 164 38 109 chr6 120551521 120551760 -28965277 + ORR1C2 LTR MaLR 1 222 -162 1 1504 650 217 0 0 chr6 120551762 120551868 -28965169 + PB1D9 SINE Alu 7 112 -8 1 1504 967 109 82 19 chr6 120551866 120552025 -28965012 + ORR1C2 LTR MaLR 216 384 0 1 1504 421 305 104 50 chr6 120552068 120552148 -28964889 - L1MC4 LINE L1 -5026 1189 1097 1 1504 1183 69 0 0 chr6 120552148 120552293 -28964744 - B1_Mus1 SINE Alu 0 148 4 1 1504 421 305 104 50 chr6 120552293 120552433 -28964604 - L1MC4 LINE L1 -5119 1096 957 1 1504 639 48 0 0 chr6 120552435 120552518 -28964519 + (TTTC)n Simple_repeat Simple_repeat 4 86 0 1 1504 832 156 0 62 chr6 120552532 120552676 -28964361 - B1_Mus1 SINE Alu -13 135 1 1 1504 1211 63 0 0 chr6 120552728 120552870 -28964167 + B1_Mus2 SINE Alu 2 143 -4 1 1504 656 271 27 14 chr6 120552920 120553066 -28963971 - RSINE1 SINE B4 -10 155 8 1 1504 208 0 0 59 chr6 120553089 120553123 -28963914 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 2 1504 1117 76 7 14 chr6 120553123 120553259 -28963778 - B1_Mus1 SINE Alu -10 138 2 2 1504 950 228 24 5 chr6 120553293 120553505 -28963532 + B3 SINE B2 1 216 0 2 1504 879 160 249 0 chr6 120553588 120553757 -28963280 - B3 SINE B2 -5 211 1 2 1504 782 119 88 22 chr6 120553789 120553926 -28963111 - B1_Mus1 SINE Alu -2 146 1 2 1504 378 297 271 6 chr6 120554354 120554520 -28962517 - ID_B1 SINE B4 -13 211 2 2 1504 408 312 0 35 chr6 120555252 120555368 -28961669 - ID_B1 SINE B4 -31 193 82 2 1504 1023 133 0 7 chr6 120555386 120555537 -28961500 + B1_Mur4 SINE Alu 1 150 0 2 1504 207 210 0 16 chr6 120555537 120555600 -28961437 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 2 1504 620 262 7 33 chr6 120555690 120555823 -28961214 - ID_B1 SINE B4 -2 222 90 2 1504 720 68 0 0 chr6 120555823 120555926 -28961111 + (TG)n Simple_repeat Simple_repeat 2 104 0 2 1504 620 262 7 33 chr6 120555926 120555942 -28961095 - ID SINE ID -135 89 77 2 1504 770 160 134 6 chr6 120555942 120556083 -28960954 - B3 SINE B2 -28 188 12 2 1504 1652 201 39 19 chr6 120556084 120556445 -28960592 + ORR1C1 LTR MaLR 3 370 -8 2 1504 482 319 86 24 chr6 120556474 120556683 -28960354 - B4 SINE B4 -69 223 2 2 1504 582 231 51 34 chr6 120556687 120556862 -28960175 - L1MA5 LINE L1 0 6300 6123 2 1504 259 300 27 117 chr6 120556913 120557125 -28959912 + ID_B1 SINE B4 41 222 -70 2 1504 309 51 0 0 chr6 120557133 120557172 -28959865 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 1504 277 269 67 28 chr6 120557594 120557728 -28959309 + MIRb SINE MIR 60 205 -57 2 1504 513 260 0 0 chr6 120557731 120557831 -28959206 + ID_B1 SINE B4 123 222 -2 2 1504 226 294 0 0 chr6 120557846 120557897 -28959140 + PB1D10 SINE Alu 27 77 -40 2 1504 402 326 46 39 chr6 120557869 120557916 -28959121 + B4 SINE B4 44 91 -201 2 1504 763 197 14 35 chr6 120557916 120558058 -28958979 + B1_Mur4 SINE Alu 2 140 -10 2 1504 315 0 0 0 chr6 120558067 120558102 -28958935 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1504 327 214 0 67 chr6 120558210 120558285 -28958752 + ID4 SINE ID 2 71 -12 2 1504 1208 54 0 13 chr6 120558371 120558520 -28958517 - B1_Mus1 SINE Alu -1 147 1 2 1504 522 205 55 92 chr6 120558810 120558967 -28958070 + B3A SINE B2 42 195 -3 2 1504 207 0 0 0 chr6 120558977 120559000 -28958037 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1504 1198 53 12 0 chr6 120559068 120559239 -28957798 + (TCC)n Simple_repeat Simple_repeat 3 175 0 2 1504 590 288 112 17 chr6 120559670 120559910 -28957127 + Lx8 LINE L1 6260 6522 -951 2 1504 1181 106 28 6 chr6 120559916 120560096 -28956941 + B2_Mm2 SINE B2 3 186 -9 2 1504 314 231 71 148 chr6 120560347 120560530 -28956507 - L1MEg LINE L1 -3980 2028 1860 2 1504 180 125 0 0 chr6 120560537 120560569 -28956468 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1504 1134 68 7 20 chr6 120560569 120560718 -28956319 - B1_Mus1 SINE Alu 0 148 2 2 1504 21 36 0 0 chr6 120560728 120560756 -28956281 + AT_rich Low_complexity Low_complexity 1 28 0 2 1504 465 181 200 0 chr6 120560758 120560863 -28956174 + B1_Mus2 SINE Alu 2 127 -20 2 1504 333 193 93 76 chr6 120560935 120561053 -28955984 + MER112 DNA MER1_type 66 185 -76 2 1504 273 182 11 172 chr6 120561052 120561145 -28955892 - PB1 SINE Alu -8 119 42 2 1504 566 157 94 46 chr6 120561233 120561372 -28955665 + B1_Mur3 SINE Alu 6 149 0 2 1504 375 41 0 0 chr6 120561406 120561455 -28955582 + (CCA)n Simple_repeat Simple_repeat 1 49 0 2 1504 1077 140 0 0 chr6 120561478 120561656 -28955381 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 2 1504 468 0 0 0 chr6 120561658 120561710 -28955327 + (CAAGA)n Simple_repeat Simple_repeat 1 52 0 2 1504 744 215 130 5 chr6 120561946 120562138 -28954899 + B3 SINE B2 1 216 0 2 1504 503 272 167 5 chr6 120562181 120562373 -28954664 + ID_B1 SINE B4 2 224 0 2 1504 201 74 0 0 chr6 120563796 120563823 -28953214 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1504 1262 34 0 0 chr6 120563823 120563970 -28953067 - B1_Mm SINE Alu 0 147 1 2 1504 680 203 8 49 chr6 120564068 120564213 -28952824 - B3 SINE B2 -6 210 73 2 1504 1309 77 16 11 chr6 120564237 120564420 -28952617 + B2_Mm1a SINE B2 2 185 -8 2 1504 941 164 89 42 chr6 120564453 120564715 -28952322 + RLTR20C LTR ERVK 1 283 -285 2 1504 761 182 53 13 chr6 120564706 120564766 -28952271 + RLTR20C LTR ERVK 423 488 -90 2 1504 288 0 0 0 chr6 120564766 120564798 -28952239 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1504 761 182 53 13 chr6 120564798 120564887 -28952150 + RLTR20C LTR ERVK 489 577 -1 2 1504 556 316 62 0 chr6 120564922 120565115 -28951922 - ID_B1 SINE B4 -1 223 19 2 1504 2234 96 41 3 chr6 120565525 120565840 -28951197 + ORR1A2 LTR MaLR 1 327 0 2 1504 262 198 184 26 chr6 120565922 120565999 -28951038 + B1F1 SINE Alu 35 144 -5 2 1504 258 329 0 14 chr6 120566022 120566096 -28950941 + ID4_ SINE ID 6 78 -5 2 1504 223 189 187 13 chr6 120566129 120566204 -28950833 + BC1_Mm scRNA scRNA 2 89 -63 2 1504 582 202 8 8 chr6 120566239 120566359 -28950678 - PB1D9 SINE Alu 0 120 1 2 1504 1144 255 140 3 chr6 120566362 120566669 -28950368 - MTE2b LTR MaLR -13 366 18 2 1504 315 272 37 0 chr6 120567437 120567518 -28949519 - RSINE1 SINE B4 -78 87 4 2 1504 316 161 0 24 chr6 120567523 120567606 -28949431 + (CAAA)n Simple_repeat Simple_repeat 2 82 0 2 1504 814 259 52 0 chr6 120567624 120567817 -28949220 - ID_B1 SINE B4 -21 203 1 2 1504 440 258 20 30 chr6 120567954 120568054 -28948983 - RSINE1 SINE B4 -23 142 44 2 1504 433 236 36 9 chr6 120568470 120568581 -28948456 + PB1D10 SINE Alu 3 116 -1 2 1504 448 255 27 18 chr6 120569389 120569501 -28947536 - PB1D10 SINE Alu -2 115 3 2 1504 645 154 163 0 chr6 120569538 120569661 -28947376 - B1_Mus2 SINE Alu 0 147 5 2 1504 242 262 126 72 chr6 120569563 120569674 -28947363 - MT2B LTR ERVL -323 278 162 2 1504 663 245 0 64 chr6 120569684 120569841 -28947196 - ID_B1 SINE B4 -1 223 77 2 1504 1213 61 0 0 chr6 120570006 120570153 -28946884 - B1_Mus2 SINE Alu 0 147 1 2 1504 438 236 81 35 chr6 120570246 120570444 -28946593 - RMER10A LTR ERVL -16 426 220 2 1504 428 216 55 155 chr6 120570436 120570655 -28946382 - RMER10A LTR ERVL -159 283 87 2 1504 281 284 0 0 chr6 120570851 120570918 -28946119 - B1_Mur2 SINE Alu -1 148 82 2 1504 851 231 141 123 chr6 120570922 120571118 -28945919 - MTC LTR MaLR -8 413 193 2 1504 1054 82 0 26 chr6 120571118 120571129 -28945908 - B1_Mus1 SINE Alu -1 147 137 2 1504 189 0 0 0 chr6 120571129 120571150 -28945887 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1504 1054 82 0 26 chr6 120571150 120571289 -28945748 - B1_Mus1 SINE Alu -12 136 1 2 1504 851 231 141 123 chr6 120571289 120571386 -28945651 - MTC LTR MaLR -229 192 114 2 1504 1034 56 0 0 chr6 120571386 120571512 -28945525 - RMER19A LTR ERVK 0 737 612 2 1504 2204 108 105 0 chr6 120571506 120571848 -28945189 - RMER19A LTR ERVK -359 378 1 2 1504 653 135 0 9 chr6 120571848 120571952 -28945085 - MTC LTR MaLR -301 106 4 2 1504 293 269 105 21 chr6 120572012 120572107 -28944930 - PB1D7 SINE Alu -5 115 13 2 1504 2352 157 36 13 chr6 120572202 120572589 -28944448 - MTB_Mm LTR MaLR -8 399 4 2 1504 275 229 14 186 chr6 120572806 120572871 -28944166 - PB1D7 SINE Alu 0 120 59 2 1504 1669 26 0 5 chr6 120572871 120573063 -28943974 - B2_Mm1a SINE B2 -1 192 2 2 1504 275 229 14 186 chr6 120573063 120573142 -28943895 - PB1D7 SINE Alu -62 58 1 2 1504 567 316 0 0 chr6 120573178 120573317 -28943720 - B1F2 SINE Alu -10 139 1 2 1504 781 268 28 14 chr6 120573320 120573492 -28943545 - ID_B1 SINE B4 -3 221 47 2 1504 1914 117 3 147 chr6 120573492 120573550 -28943487 + ORR1A2 LTR MaLR 1 57 -270 2 1504 1103 62 7 0 chr6 120573550 120573695 -28943342 + B1_Mus2 SINE Alu 1 146 -1 2 1504 1914 117 3 147 chr6 120573695 120573943 -28943094 + ORR1A2 LTR MaLR 58 255 -72 2 1504 947 96 6 99 chr6 120573943 120574105 -28942932 - B1_Mus1 SINE Alu 0 148 2 2 1504 1914 117 3 147 chr6 120574105 120574179 -28942858 + ORR1A2 LTR MaLR 256 327 0 2 1504 781 268 28 14 chr6 120574179 120574222 -28942815 - ID SINE ID -178 46 4 2 1504 592 126 0 59 chr6 120574228 120574329 -28942708 - PB1D9 SINE Alu -2 118 24 2 1504 1273 104 28 0 chr6 120574372 120574554 -28942483 - B2_Mm2 SINE B2 -7 188 2 2 1504 221 231 0 0 chr6 120574609 120574648 -28942389 + B3A SINE B2 1 39 -159 2 1504 314 147 309 0 chr6 120574650 120574718 -28942319 + B1_Mur4 SINE Alu 54 142 -8 2 1504 637 217 8 16 chr6 120574770 120574892 -28942145 + B1_Mur3 SINE Alu 10 130 -19 2 1504 486 49 0 0 chr6 120574896 120574957 -28942080 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1504 714 278 6 0 chr6 120574967 120575129 -28941908 + B3 SINE B2 54 216 0 2 1504 238 296 56 14 chr6 120575578 120575650 -28941387 + RSINE1 SINE B4 12 86 -79 2 1504 1036 189 27 16 chr6 120575591 120575779 -28941258 + B3 SINE B2 27 216 0 2 1504 425 294 28 0 chr6 120575808 120575917 -28941120 + B3 SINE B2 2 113 -103 2 1504 1235 55 0 0 chr6 120576450 120576596 -28940441 + B1_Mus2 SINE Alu 2 147 0 2 1504 312 241 0 0 chr6 120576612 120576699 -28940338 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 1504 900 283 42 31 chr6 120576703 120576991 -28940046 - B4A SINE B4 -1 291 1 2 1504 274 232 165 35 chr6 120577184 120577269 -28939768 + MLT1B LTR MaLR 20 115 -275 2 1504 1153 261 67 97 chr6 120577450 120577841 -28939196 + MTE2a LTR MaLR 1 379 0 2 1504 227 187 128 39 chr6 120578065 120578143 -28938894 + MTEb LTR MaLR 295 379 0 2 1504 287 244 88 25 chr6 120578146 120578226 -28938811 - PB1 SINE Alu -51 98 14 2 1504 219 273 0 0 chr6 120578393 120578448 -28938589 - B4 SINE B4 -214 78 24 2 1504 206 86 0 103 chr6 120578641 120578680 -28938357 + A-rich Low_complexity Low_complexity 3 37 0 2 1504 370 267 119 0 chr6 120578843 120578861 -28938176 - PB1D10 SINE Alu -2 115 3 3 1504 404 241 36 0 chr6 120578861 120578944 -28938093 - ID_B1 SINE B4 -55 169 84 3 1504 483 236 33 33 chr6 120578951 120579091 -28937946 + MIR SINE MIR 77 216 -52 3 1504 316 205 18 6 chr6 120579252 120579317 -28937720 + B1_Mus1 SINE Alu 1 65 -83 3 1504 742 148 0 21 chr6 120579317 120579462 -28937575 + T-rich Low_complexity Low_complexity 3 144 0 3 1504 1078 89 0 52 chr6 120579462 120579616 -28937421 - B1_Mus2 SINE Alu 0 147 2 3 1504 264 30 0 0 chr6 120579628 120579661 -28937376 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1504 1159 82 0 0 chr6 120579678 120579825 -28937212 - B1_Mus1 SINE Alu 0 148 2 3 1504 1257 91 34 34 chr6 120579831 120580035 -28937002 - RLTR19B LTR ERVK -510 205 2 3 1504 949 122 7 21 chr6 120580046 120580188 -28936849 + B1_Mur3 SINE Alu 1 140 -9 3 1504 1125 108 25 37 chr6 120580306 120580510 -28936527 + B2_Mm1t SINE B2 2 181 -14 3 1504 448 81 350 39 chr6 120580553 120580656 -28936381 + B2_Mm2 SINE B2 47 181 -14 3 1504 426 291 92 13 chr6 120580791 120580939 -28936098 - ID_B1 SINE B4 -68 224 67 3 1504 999 222 14 5 chr6 120581396 120581609 -28935428 - B3 SINE B2 -1 215 1 3 1504 836 169 28 0 chr6 120581636 120581778 -28935259 + B1_Mur2 SINE Alu 1 146 -3 3 1504 892 83 135 92 chr6 120581793 120581978 -28935059 + B2_Mm2 SINE B2 2 194 -1 3 1504 23 0 0 0 chr6 120582132 120582155 -28934882 + AT_rich Low_complexity Low_complexity 1 23 0 3 1504 468 0 0 0 chr6 120582240 120582292 -28934745 + (TATG)n Simple_repeat Simple_repeat 2 53 0 3 1504 374 196 81 1 chr6 120582292 120582390 -28934647 - PB1D9 SINE Alu -9 140 42 3 1504 915 117 0 82 chr6 120582405 120582657 -28934380 + (TCTCTG)n Simple_repeat Simple_repeat 1 231 0 3 1504 1098 150 0 22 chr6 120582668 120582852 -28934185 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 3 1504 235 211 58 0 chr6 120582864 120582916 -28934121 - B1F2 SINE Alu -92 57 3 3 1504 237 233 17 0 chr6 120583129 120583189 -28933848 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 3 1504 627 238 18 48 chr6 120583265 120583433 -28933604 + RSINE1 SINE B4 3 165 0 3 1504 207 0 0 0 chr6 120583434 120583457 -28933580 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 1504 264 110 53 27 chr6 120583728 120583803 -28933234 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 3 1504 297 51 0 0 chr6 120583808 120583847 -28933190 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1504 779 145 250 0 chr6 120583856 120584028 -28933009 + B3 SINE B2 2 216 0 3 1504 744 208 7 32 chr6 120584056 120584210 -28932827 + B1_Mur4 SINE Alu 1 150 0 3 1504 1100 82 134 0 chr6 120584212 120584383 -28932654 + B2_Mm2 SINE B2 2 195 0 3 1504 214 164 13 27 chr6 120584392 120584467 -28932570 + A-rich Low_complexity Low_complexity 3 76 0 3 1504 315 311 99 49 chr6 120584481 120584623 -28932414 + B4 SINE B4 72 220 -72 3 1504 570 234 121 0 chr6 120584500 120584624 -28932413 + B1_Mur1 SINE Alu 6 144 -5 3 1504 215 143 48 72 chr6 120584628 120584685 -28932352 + A-rich Low_complexity Low_complexity 3 57 0 3 1504 685 196 170 16 chr6 120584685 120584867 -28932170 + B3 SINE B2 4 213 -3 3 1504 215 143 48 72 chr6 120584867 120584892 -28932145 + A-rich Low_complexity Low_complexity 58 83 0 3 1504 219 36 0 0 chr6 120585029 120585057 -28931980 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1504 180 0 0 0 chr6 120585059 120585079 -28931958 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1504 850 157 11 0 chr6 120585079 120585257 -28931780 + GA-rich Low_complexity Low_complexity 1 180 0 3 1504 830 129 72 0 chr6 120585297 120585436 -28931601 - B1_Mur3 SINE Alu 0 149 1 3 1505 387 292 95 36 chr6 120586453 120586674 -28930363 + RMER13B LTR ERVK 7 277 -365 3 1505 464 148 0 0 chr6 120586684 120586772 -28930265 + L1Md_F2 LINE L1 6495 6582 0 3 1505 186 103 0 0 chr6 120586779 120586808 -28930229 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 3 1505 369 247 27 0 chr6 120586808 120586881 -28930156 + RSINE1 SINE B4 77 151 -14 3 1505 1074 140 0 0 chr6 120586886 120587101 -28929936 + (CATA)n Simple_repeat Simple_repeat 1 215 0 3 1505 286 316 80 90 chr6 120587176 120587465 -28929572 + B4A SINE B4 1 286 -6 3 1505 939 120 38 0 chr6 120587586 120587719 -28929318 + B1_Mur4 SINE Alu 2 139 -11 3 1505 393 239 0 0 chr6 120587854 120587925 -28929112 - B4A SINE B4 -4 288 218 3 1505 413 319 35 7 chr6 120587985 120588130 -28928907 - B4A SINE B4 0 292 144 3 1505 524 187 33 0 chr6 120588133 120588224 -28928813 + B3 SINE B2 1 94 -122 3 1505 291 174 0 21 chr6 120588514 120588561 -28928476 - B4 SINE B4 -221 71 26 3 1505 1235 35 7 0 chr6 120588633 120588778 -28928259 + B1_Mm SINE Alu 2 147 0 3 1505 189 0 0 0 chr6 120588779 120588800 -28928237 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 3 1505 25 0 0 0 chr6 120588842 120588867 -28928170 + AT_rich Low_complexity Low_complexity 1 25 0 3 1505 230 0 0 32 chr6 120588869 120588900 -28928137 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1505 817 163 0 22 chr6 120588900 120589038 -28927999 - B1_Mur4 SINE Alu -15 135 1 3 1505 829 209 12 12 chr6 120589065 120589225 -28927812 - B3 SINE B2 -54 162 3 3 1505 583 255 14 7 chr6 120589336 120589478 -28927559 + B1F SINE Alu 2 144 -5 3 1505 215 173 173 0 chr6 120589770 120589822 -28927215 + PB1 SINE Alu 24 84 -43 3 1505 345 277 229 55 chr6 120589861 120590044 -28926993 + MER20 DNA MER1_type 1 215 -4 3 1505 606 93 0 0 chr6 120590132 120590218 -28926819 + (TG)n Simple_repeat Simple_repeat 1 86 0 3 1505 277 231 0 0 chr6 120590218 120590270 -28926767 - RSINE1 SINE B4 -110 55 4 3 1505 484 306 14 7 chr6 120590292 120590440 -28926597 - B1F SINE Alu 0 149 1 3 1505 287 321 0 26 chr6 120590541 120590656 -28926381 + PB1D10 SINE Alu 5 116 -1 3 1505 794 218 0 7 chr6 120590660 120590808 -28926229 + B1_Mur1 SINE Alu 1 147 -2 3 1505 247 274 81 0 chr6 120590830 120590892 -28926145 + ID4_ SINE ID 8 74 -9 3 1505 420 233 267 15 chr6 120591029 120591160 -28925877 + RSINE1 SINE B4 2 165 0 3 1505 821 231 21 90 chr6 120591168 120591305 -28925732 - ORR1D1 LTR MaLR -104 270 130 3 1505 1129 88 0 7 chr6 120591305 120591453 -28925584 + B1_Mus1 SINE Alu 2 148 0 3 1505 821 231 21 90 chr6 120591453 120591605 -28925432 - ORR1D1 LTR MaLR -245 129 1 3 1505 312 226 175 41 chr6 120591722 120591819 -28925218 + RSINE1 SINE B4 3 112 -53 3 1505 890 122 7 28 chr6 120592493 120592636 -28924401 - B1_Mus1 SINE Alu -1 147 8 3 1505 544 276 6 52 chr6 120592636 120592665 -28924372 - ID_B1 SINE B4 -1 223 60 3 1505 468 0 0 0 chr6 120592680 120592732 -28924305 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1505 504 0 0 0 chr6 120592732 120592787 -28924250 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1505 529 130 54 0 chr6 120592795 120592887 -28924150 - B3 SINE B2 -105 111 15 3 1505 600 237 68 15 chr6 120592895 120593028 -28924009 - B1_Mur2 SINE Alu 0 149 10 3 1505 226 226 45 61 chr6 120593104 120593117 -28923920 + PB1 SINE Alu 63 125 0 3 1505 276 167 0 59 chr6 120593117 120593168 -28923869 + ID_B1 SINE B4 174 221 -3 3 1505 751 199 14 7 chr6 120593170 120593317 -28923720 + B1_Mus1 SINE Alu 1 148 0 3 1505 28 29 0 0 chr6 120593317 120593352 -28923685 + AT_rich Low_complexity Low_complexity 1 35 0 3 1505 520 283 97 32 chr6 120593365 120593551 -28923486 + B3A SINE B2 1 198 0 3 1505 21 0 0 0 chr6 120593766 120593787 -28923250 + AT_rich Low_complexity Low_complexity 1 21 0 3 1505 477 270 79 14 chr6 120593942 120594081 -28922956 - B3 SINE B2 -62 154 7 3 1505 344 191 88 0 chr6 120594096 120594164 -28922873 - PB1D10 SINE Alu -11 106 33 3 1505 292 242 29 48 chr6 120595060 120595164 -28921873 + PB1D9 SINE Alu 1 102 -18 3 1505 561 185 34 88 chr6 120595133 120595281 -28921756 + B3A SINE B2 59 198 0 3 1505 274 258 20 30 chr6 120595400 120595500 -28921537 + L1MA6 LINE L1 6106 6204 -96 3 1505 218 261 0 0 chr6 120595521 120595567 -28921470 + GA-rich Low_complexity Low_complexity 2 47 0 3 1505 377 273 82 57 chr6 120595571 120595730 -28921307 + RSINE1 SINE B4 3 165 0 3 1505 546 216 0 72 chr6 120595852 120595977 -28921060 - PB1D9 SINE Alu -2 118 3 3 1505 238 241 208 76 chr6 120596021 120596038 -28920999 + B4A SINE B4 81 96 -196 3 1505 270 0 0 0 chr6 120596038 120596068 -28920969 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1505 354 260 29 39 chr6 120596075 120596179 -28920858 + PB1D10 SINE Alu 15 117 0 3 1505 731 302 29 13 chr6 120596183 120596420 -28920617 + B4A SINE B4 1 241 -51 3 1505 323 188 14 0 chr6 120596420 120596497 -28920540 + B3 SINE B2 1 84 -111 3 1505 189 0 0 0 chr6 120596899 120596920 -28920117 + (GCTG)n Simple_repeat Simple_repeat 3 23 0 3 1505 878 176 28 0 chr6 120597108 120597250 -28919787 + B1_Mus1 SINE Alu 2 147 -1 3 1505 1467 27 31 46 chr6 120597590 120597784 -28919253 - B2_Mm1t SINE B2 -1 192 2 3 1505 763 251 30 81 chr6 120597792 120598026 -28919011 - ID_B1 SINE B4 -2 222 1 3 1505 279 0 0 0 chr6 120598837 120598868 -28918169 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 3 1505 931 138 0 0 chr6 120598870 120599008 -28918029 - B1_Mus1 SINE Alu -10 138 1 3 1505 842 199 96 15 chr6 120599123 120599322 -28917715 - B3 SINE B2 0 216 2 3 1505 1113 96 0 0 chr6 120599448 120599594 -28917443 + B1_Mus2 SINE Alu 2 147 0 3 1505 231 36 0 0 chr6 120599594 120599622 -28917415 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 4 1505 879 209 107 78 chr6 120599716 120599875 -28917162 - MTD LTR MaLR -39 380 209 4 1505 228 86 0 0 chr6 120599882 120599917 -28917120 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 4 1505 1165 74 0 0 chr6 120599917 120600057 -28916980 - B1_Mus1 SINE Alu -7 141 2 4 1505 879 215 107 80 chr6 120600057 120600201 -28916836 - MTD LTR MaLR -211 208 74 4 1505 530 195 133 0 chr6 120600179 120600292 -28916745 + B1_Mur2 SINE Alu 22 149 0 4 1505 432 231 93 0 chr6 120600278 120600386 -28916651 - MTD LTR MaLR -293 126 9 4 1505 358 169 12 24 chr6 120600432 120600517 -28916520 + C-rich Low_complexity Low_complexity 3 86 0 4 1505 286 242 0 15 chr6 120600525 120600581 -28916456 - ID_B1 SINE B4 -2 222 167 4 1505 180 0 0 0 chr6 120600581 120600601 -28916436 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1505 192 40 0 0 chr6 120600865 120600890 -28916147 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 1505 470 270 36 0 chr6 120600891 120601002 -28916035 - PB1D10 SINE Alu -2 115 1 4 1505 473 242 0 0 chr6 120600912 120601003 -28916034 - ID_B1 SINE B4 -53 171 81 4 1505 365 169 0 15 chr6 120601042 120601108 -28915929 - B1_Mur1 SINE Alu 0 149 85 4 1505 426 157 29 0 chr6 120601246 120601316 -28915721 - PB1D9 SINE Alu -40 80 9 4 1505 874 160 0 7 chr6 120601325 120601470 -28915567 - B1_Mus1 SINE Alu -1 147 4 4 1505 375 289 16 73 chr6 120601520 120601643 -28915394 - B4A SINE B4 -174 118 3 4 1505 286 214 0 0 chr6 120601701 120601757 -28915280 + B2_Mm2 SINE B2 1 56 -139 4 1505 974 163 80 24 chr6 120601764 120601977 -28915060 + URR1B DNA MER1_type 1 225 0 4 1505 446 271 55 25 chr6 120601979 120602140 -28914897 + B3A SINE B2 5 170 -23 4 1505 591 231 220 21 chr6 120602243 120602429 -28914608 - ID_B1 SINE B4 0 224 2 4 1505 1105 110 0 0 chr6 120603341 120603487 -28913550 + B1_Mus2 SINE Alu 2 147 0 4 1505 226 171 0 0 chr6 120603525 120603560 -28913477 + B3A SINE B2 1 35 -163 4 1505 1240 73 5 92 chr6 120603563 120603725 -28913312 + B2_Mm1t SINE B2 16 165 -28 4 1505 932 84 114 0 chr6 120603725 120603856 -28913181 + B1_Mus2 SINE Alu 2 147 0 4 1505 1240 73 5 92 chr6 120603856 120603888 -28913149 + B2_Mm1t SINE B2 166 193 0 4 1505 407 271 182 21 chr6 120603893 120604036 -28913001 + B3 SINE B2 39 204 -12 4 1505 831 135 60 0 chr6 120604288 120604421 -28912616 - B1_Mus1 SINE Alu 0 148 8 4 1505 463 257 0 56 chr6 120604322 120604466 -28912571 - MT2B LTR ERVL -337 264 129 4 1505 1550 29 0 0 chr6 120604615 120604788 -28912249 - B2_Mm1a SINE B2 -19 174 2 4 1505 648 241 21 21 chr6 120605137 120605277 -28911760 - RSINE1 SINE B4 -8 157 18 4 1505 222 311 207 0 chr6 120605339 120605474 -28911563 - RSINE1 SINE B4 -2 163 1 4 1505 780 283 21 30 chr6 120605474 120605701 -28911336 - B4A SINE B4 -64 228 4 4 1505 661 157 26 17 chr6 120605749 120605866 -28911171 - B1_Mur1 SINE Alu 0 149 32 4 1505 441 314 44 44 chr6 120605866 120605929 -28911108 - ID_B1 SINE B4 -2 222 43 4 1505 186 43 0 0 chr6 120605946 120605969 -28911068 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1505 488 276 35 0 chr6 120606199 120606315 -28910722 + RSINE1 SINE B4 16 135 -30 4 1505 613 219 85 8 chr6 120606488 120606617 -28910420 - ID_B1 SINE B4 -4 220 82 4 1505 493 198 10 30 chr6 120606632 120606729 -28910308 - B1_Mur1 SINE Alu -1 148 54 4 1505 3000 150 68 25 chr6 120606729 120607154 -28909883 + RMER15 LTR ERVL 1 446 -129 4 1505 4043 87 9 11 chr6 120607154 120607722 -28909315 + RMER2 LTR ERV1 1 567 0 4 1505 3000 150 68 25 chr6 120607722 120607844 -28909193 + RMER15 LTR ERVL 447 571 -4 4 1505 246 189 0 0 chr6 120607850 120607887 -28909150 + MurSatRep1 Unknown Unknown 228 264 -1873 4 1505 815 124 7 9 chr6 120607887 120608029 -28909008 + B1_Mur4 SINE Alu 16 150 0 4 1505 27 29 0 0 chr6 120608107 120608141 -28908896 + AT_rich Low_complexity Low_complexity 1 34 0 4 1505 754 159 0 31 chr6 120608148 120608278 -28908759 + B1_Mur3 SINE Alu 21 146 -3 4 1505 715 191 57 35 chr6 120608428 120608569 -28908468 - B1_Mur1 SINE Alu -1 148 5 4 1505 303 224 14 29 chr6 120609287 120609356 -28907681 - RSINE1 SINE B4 -12 153 86 4 1505 629 251 89 6 chr6 120609374 120609542 -28907495 - B3 SINE B2 -27 189 8 4 1505 367 282 206 0 chr6 120609536 120609559 -28907478 - B4A SINE B4 -46 246 89 4 1505 474 224 28 9 chr6 120609559 120609667 -28907370 - PB1D9 SINE Alu -7 113 4 4 1505 832 35 216 0 chr6 120609708 120609824 -28907213 - B1_Mm SINE Alu -4 143 3 4 1505 266 257 0 13 chr6 120609945 120610020 -28907017 - RSINE1 SINE B4 -81 84 11 4 1505 271 229 180 0 chr6 120610090 120610151 -28906886 - ID4_ SINE ID -2 81 10 4 1505 657 182 28 28 chr6 120610154 120610295 -28906742 + B1_Mur4 SINE Alu 2 142 -8 4 1505 620 251 10 101 chr6 120610404 120610433 -28906604 - B3 SINE B2 -1 215 189 4 1505 1908 183 32 47 chr6 120610433 120610474 -28906563 + RMER10B LTR ERVL 1 41 -357 4 1505 1068 79 57 0 chr6 120610474 120610614 -28906423 - B1_Mus1 SINE Alu 0 148 1 4 1505 1908 183 32 47 chr6 120610614 120610973 -28906064 + RMER10B LTR ERVL 42 395 -3 4 1505 482 207 148 8 chr6 120610973 120611095 -28905942 - B1_Mur2 SINE Alu -7 142 4 4 1505 620 251 10 101 chr6 120611095 120611272 -28905765 - B3 SINE B2 -28 188 28 4 1505 816 186 14 14 chr6 120611280 120611422 -28905615 - B1_Mur3 SINE Alu -7 142 1 4 1505 270 81 0 0 chr6 120611424 120611461 -28905576 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1505 515 204 0 0 chr6 120611683 120611776 -28905261 + 4.5SRNA scRNA scRNA 1 93 -1 4 1505 868 133 59 0 chr6 120611780 120611915 -28905122 + B1_Mus2 SINE Alu 5 147 0 4 1505 591 226 48 0 chr6 120611977 120612123 -28904914 + B3 SINE B2 47 199 -17 4 1505 734 259 60 0 chr6 120612167 120612352 -28904685 - B3 SINE B2 -6 210 15 4 1505 437 241 60 12 chr6 120612372 120612501 -28904536 + B1_Mur2 SINE Alu 4 134 -15 4 1505 784 246 45 30 chr6 120612537 120612738 -28904299 + B3 SINE B2 6 209 -7 4 1505 446 290 24 8 chr6 120612800 120612925 -28904112 - B1F SINE Alu -17 132 6 4 1505 504 224 144 0 chr6 120612919 120613044 -28903993 - RSINE1 SINE B4 -20 145 3 4 1505 753 115 311 0 chr6 120613070 120613218 -28903819 + B2_Mm2 SINE B2 2 195 0 4 1505 362 309 21 0 chr6 120613230 120613327 -28903710 - ID_B1 SINE B4 -12 212 114 4 1505 33 0 0 0 chr6 120613339 120613372 -28903665 + AT_rich Low_complexity Low_complexity 1 33 0 4 1505 1064 75 7 46 chr6 120613376 120613529 -28903508 - B1_Mus1 SINE Alu 0 148 2 4 1505 245 230 192 39 chr6 120614607 120614711 -28902326 + ID_B1 SINE B4 102 221 -3 4 1505 189 74 0 0 chr6 120615793 120615820 -28901217 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 1505 37 86 0 0 chr6 120616111 120616204 -28900833 + GC_rich Low_complexity Low_complexity 1 93 0 4 1505 33 56 0 0 chr6 120616374 120616428 -28900609 + GC_rich Low_complexity Low_complexity 1 54 0 4 1505 25 0 0 0 chr6 120616460 120616485 -28900552 + GC_rich Low_complexity Low_complexity 1 25 0 4 1505 212 31 62 0 chr6 120616557 120616589 -28900448 + (CGAG)n Simple_repeat Simple_repeat 1 34 0 4 1505 267 31 0 0 chr6 120618316 120618348 -28898689 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1505 377 310 70 0 chr6 120618729 120618871 -28898166 - RSINE1 SINE B4 -6 159 8 4 1505 216 67 0 0 chr6 120619265 120619295 -28897742 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1505 1220 22 0 0 chr6 120619295 120619434 -28897603 - B1_Mus1 SINE Alu -9 139 1 4 1505 254 280 13 13 chr6 120619881 120619957 -28897080 - ID4_ SINE ID -6 77 2 4 1505 835 127 48 0 chr6 120619973 120620099 -28896938 - B1F2 SINE Alu -13 136 5 4 1505 457 175 121 17 chr6 120621006 120621122 -28895915 + URR1B DNA MER1_type 1 128 -97 4 1505 492 167 11 0 chr6 120621485 120621575 -28895462 - B1_Mur3 SINE Alu -1 148 58 4 1505 995 61 129 41 chr6 120621640 120621811 -28895226 + B2_Mm2 SINE B2 2 187 -8 4 1505 1195 49 14 0 chr6 120622105 120622249 -28894788 - B1_Mus2 SINE Alu 0 147 2 4 1505 698 182 48 20 chr6 120622376 120622522 -28894515 - B1_Mur4 SINE Alu 0 150 1 4 1505 353 298 25 34 chr6 120622523 120622641 -28894396 - PB1D7 SINE Alu 0 120 4 4 1505 244 299 51 10 chr6 120622691 120622789 -28894248 - L2a LINE L2 -4 3422 3321 4 1505 634 290 0 18 chr6 120622791 120622956 -28894081 + RSINE1 SINE B4 4 165 0 4 1505 415 149 90 3 chr6 120622978 120623093 -28893944 - B1_Mur4 SINE Alu -6 144 1 4 1505 22 0 0 0 chr6 120623098 120623120 -28893917 + AT_rich Low_complexity Low_complexity 1 22 0 4 1505 638 191 26 72 chr6 120623319 120623471 -28893566 + B1_Mur1 SINE Alu 5 149 0 4 1505 886 212 90 0 chr6 120623492 120623681 -28893356 - B3 SINE B2 -10 206 1 4 1505 1206 54 0 0 chr6 120624681 120624828 -28892209 - B1_Mus2 SINE Alu 0 147 1 4 1505 747 193 14 14 chr6 120624958 120625100 -28891937 - B1_Mus1 SINE Alu -5 143 2 4 1505 283 242 99 59 chr6 120625179 120625280 -28891757 - B1_Mur3 SINE Alu -31 118 14 4 1505 218 266 0 0 chr6 120625369 120625392 -28891645 + T-rich Low_complexity Low_complexity 42 64 0 4 1505 1159 48 7 33 chr6 120625392 120625544 -28891493 - B1_Mus1 SINE Alu 0 148 1 4 1505 218 266 0 0 chr6 120625544 120625584 -28891453 + T-rich Low_complexity Low_complexity 2 41 0 4 1505 333 140 0 0 chr6 120625624 120625674 -28891363 - PB1D9 SINE Alu -68 52 3 4 1505 237 301 0 27 chr6 120625674 120625699 -28891338 - B4 SINE B4 -155 137 65 4 1505 679 181 82 15 chr6 120625787 120625922 -28891115 + B1_Mur4 SINE Alu 7 150 0 4 1505 230 136 23 0 chr6 120625988 120626032 -28891005 + C-rich Low_complexity Low_complexity 5 49 0 5 1505 1159 34 13 45 chr6 120627129 120627283 -28889754 - B1_Mur4 SINE Alu -1 149 1 5 1505 360 0 0 0 chr6 120627433 120627473 -28889564 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 1505 324 0 0 0 chr6 120627473 120627508 -28889529 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1505 25 51 0 0 chr6 120627600 120627639 -28889398 + AT_rich Low_complexity Low_complexity 1 39 0 5 1505 692 204 254 6 chr6 120627644 120627817 -28889220 - B3 SINE B2 0 216 1 5 1505 528 244 41 0 chr6 120627820 120627943 -28889094 - B1F2 SINE Alu -7 142 15 5 1505 23 33 0 0 chr6 120628073 120628103 -28888934 + AT_rich Low_complexity Low_complexity 1 30 0 5 1505 516 299 14 0 chr6 120628118 120628262 -28888775 - RSINE1 SINE B4 -18 147 2 5 1505 662 151 69 38 chr6 120628308 120628439 -28888598 + B1_Mus1 SINE Alu 14 148 0 5 1505 2946 72 2 22 chr6 120628457 120628871 -28888166 - L1_Mus4 LINE L1 -3 6633 6228 5 1505 608 276 5 90 chr6 120628871 120629082 -28887955 - B3A SINE B2 -1 197 5 5 1505 339 25 0 0 chr6 120629331 120629371 -28887666 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 5 1505 246 156 0 0 chr6 120629400 120629445 -28887592 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 5 1505 685 194 43 7 chr6 120629470 120629610 -28887427 - B1_Mur3 SINE Alu 0 149 5 5 1505 258 164 12 110 chr6 120630100 120630182 -28886855 - B4A SINE B4 -1 291 218 5 1505 254 281 112 88 chr6 120630527 120630687 -28886350 - RSINE1 SINE B4 0 165 2 5 1505 234 0 0 0 chr6 120630771 120630797 -28886240 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1505 1192 41 14 14 chr6 120630817 120630964 -28886073 + B1_Mm SINE Alu 1 147 0 5 1505 228 238 0 2 chr6 120630980 120631027 -28886010 - B1F1 SINE Alu -13 136 91 5 1505 231 287 135 22 chr6 120631170 120631259 -28885778 - ID_B1 SINE B4 -30 194 96 5 1505 180 0 0 0 chr6 120631277 120631297 -28885740 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1505 299 274 0 0 chr6 120631404 120631466 -28885571 - RSINE1 SINE B4 -102 63 2 5 1505 22 0 0 0 chr6 120631473 120631495 -28885542 + AT_rich Low_complexity Low_complexity 1 22 0 5 1505 599 197 77 23 chr6 120631504 120631634 -28885403 + B1_Mur3 SINE Alu 1 137 -12 5 1505 354 211 79 119 chr6 120631691 120631868 -28885169 + B2_Mm2 SINE B2 3 172 -23 5 1505 1366 188 95 53 chr6 120631895 120632254 -28884783 - ORR1D1 LTR MaLR 0 374 1 5 1505 373 224 70 9 chr6 120632274 120632403 -28884634 - L1MA5A LINE L1 -332 5842 5706 5 1505 23 33 0 0 chr6 120632694 120632724 -28884313 + AT_rich Low_complexity Low_complexity 1 30 0 5 1505 593 184 114 24 chr6 120632732 120632899 -28884138 - B3 SINE B2 -6 210 29 5 1505 1024 118 0 128 chr6 120632914 120633058 -28883979 - B2_Mm2 SINE B2 -25 170 40 5 1505 1049 61 183 30 chr6 120633058 120633227 -28883810 - B2_Mm2 SINE B2 0 195 1 5 1505 1298 80 34 0 chr6 120633237 120633412 -28883625 - B2_Mm2 SINE B2 -14 181 1 5 1505 1024 118 0 128 chr6 120633412 120633451 -28883586 - B2_Mm2 SINE B2 -156 39 1 5 1505 304 227 204 0 chr6 120633518 120633606 -28883431 - B3A SINE B2 -91 107 2 5 1505 763 182 14 14 chr6 120633873 120634018 -28883019 + B1_Mus2 SINE Alu 1 145 -2 5 1505 395 330 0 0 chr6 120634338 120634453 -28882584 + PB1D10 SINE Alu 2 116 -1 5 1505 418 330 43 130 chr6 120634465 120634695 -28882342 + ID_B1 SINE B4 11 220 -4 5 1505 313 254 0 14 chr6 120634698 120634770 -28882267 + B1_Mur3 SINE Alu 2 72 -77 5 1505 216 320 0 93 chr6 120635335 120635421 -28881616 + RSINE1 SINE B4 88 165 0 5 1505 1019 101 0 0 chr6 120635641 120635780 -28881257 - B1_Mus2 SINE Alu -8 139 1 5 1505 257 270 43 53 chr6 120635794 120635888 -28881149 + MER5A1 DNA MER1_type 72 164 -2 5 1505 189 0 0 0 chr6 120636146 120636167 -28880870 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1505 1269 142 19 5 chr6 120636265 120636478 -28880559 - URR1A DNA MER1_type 0 226 11 5 1505 624 182 18 0 chr6 120636621 120636731 -28880306 - B1_Mus1 SINE Alu -34 114 3 5 1505 396 0 0 0 chr6 120637022 120637066 -28879971 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1505 239 292 15 15 chr6 120637741 120637807 -28879230 + PB1 SINE Alu 54 119 -8 5 1505 247 262 0 16 chr6 120637912 120637974 -28879063 + MurSatRep1 Unknown Unknown 229 289 -1848 5 1505 250 323 39 8 chr6 120637987 120638115 -28878922 - L1ME2 LINE L1 -4 6160 6029 5 1505 1002 4 0 77 chr6 120638163 120638463 -28878574 + (TTCTC)n Simple_repeat Simple_repeat 1 276 0 5 1505 1097 85 0 0 chr6 120638464 120638605 -28878432 - B1_Mus1 SINE Alu -6 142 2 5 1505 610 184 32 8 chr6 120638721 120638847 -28878190 - B1_Mur3 SINE Alu -2 147 19 5 1505 328 297 16 78 chr6 120638763 120638891 -28878146 - MT2B LTR ERVL -344 257 138 5 1505 552 30 0 0 chr6 120639179 120639245 -28877792 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1505 307 158 0 17 chr6 120639245 120639303 -28877734 - B1_Mur3 SINE Alu -18 131 75 5 1505 341 323 0 0 chr6 120639499 120639595 -28877442 - PB1D10 SINE Alu -16 101 6 5 1505 357 272 19 28 chr6 120639513 120639619 -28877418 - ID_B1 SINE B4 -56 168 70 5 1505 429 193 104 9 chr6 120639655 120639770 -28877267 - L1MCa LINE L1 -6376 132 7 5 1505 1408 70 37 21 chr6 120639923 120640114 -28876923 - B2_Mm2 SINE B2 0 195 2 5 1505 435 211 109 29 chr6 120640303 120640440 -28876597 + B1_Mus1 SINE Alu 1 148 0 5 1505 340 310 70 0 chr6 120640761 120640861 -28876176 + B3 SINE B2 97 203 -13 5 1505 332 252 237 0 chr6 120640886 120641020 -28876017 - ID_B1 SINE B4 -58 166 1 5 1505 210 37 0 0 chr6 120641449 120641476 -28875561 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1505 226 250 234 13 chr6 120641543 120641620 -28875417 - PB1D9 SINE Alu 0 120 27 5 1505 464 0 18 0 chr6 120641728 120641784 -28875253 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1505 1058 108 0 0 chr6 120641823 120641962 -28875075 + B1_Mus2 SINE Alu 3 141 -6 5 1505 255 191 406 21 chr6 120642261 120642357 -28874680 - B1_Mur3 SINE Alu -15 134 2 5 1505 182 33 67 0 chr6 120642471 120642501 -28874536 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1505 241 175 0 0 chr6 120642610 120642650 -28874387 + B1F SINE Alu 73 112 -37 5 1505 234 273 45 0 chr6 120643270 120643336 -28873701 + B1F1 SINE Alu 24 92 -57 5 1505 246 105 0 0 chr6 120643607 120643645 -28873392 + (CCCCCT)n Simple_repeat Simple_repeat 1 38 0 5 1505 1091 165 16 6 chr6 120643648 120643831 -28873206 - B2_Mm2 SINE B2 -9 186 2 5 1505 231 179 0 0 chr6 120645368 120645407 -28871630 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 5 1505 212 279 0 209 chr6 120645424 120645510 -28871527 - RSINE1 SINE B4 0 165 98 5 1505 242 343 65 99 chr6 120645476 120645677 -28871360 - B4 SINE B4 -16 276 83 5 1505 788 206 45 34 chr6 120645685 120645861 -28871176 - B3 SINE B2 -38 178 1 5 1505 815 262 128 36 chr6 120645953 120646168 -28870869 - MT2A LTR ERVL -5 557 276 5 1505 628 188 55 55 chr6 120646168 120646314 -28870723 + B1_Mm SINE Alu 1 146 -1 5 1505 815 296 107 78 chr6 120646314 120646592 -28870445 - MT2A LTR ERVL -258 275 3 5 1505 411 222 167 0 chr6 120646855 120646963 -28870074 - B1_Mur1 SINE Alu -14 135 10 5 1505 827 202 112 20 chr6 120646997 120647194 -28869843 - B3 SINE B2 0 216 2 5 1505 333 138 164 0 chr6 120647317 120647424 -28869613 - B2_Mm2 SINE B2 -6 189 46 5 1505 1310 76 41 0 chr6 120647437 120647609 -28869428 - B2_Mm2 SINE B2 -15 180 2 5 1505 491 310 65 20 chr6 120647609 120647902 -28869135 - L1MB7 LINE L1 -44 6140 5835 5 1505 703 214 187 0 chr6 120647905 120648173 -28868864 - MTD LTR MaLR -4 415 98 5 1505 3322 144 46 126 chr6 120648338 120648832 -28868205 - Lx2A1 LINE L1 -1354 5654 5164 5 1505 316 48 62 46 chr6 120648832 120648897 -28868140 - B2_Mm1a SINE B2 -1 192 127 5 1505 3322 144 46 126 chr6 120648897 120648932 -28868105 - Lx2A1 LINE L1 -1354 5163 5128 5 1505 1126 88 44 61 chr6 120648932 120649113 -28867924 - B2_Mm1t SINE B2 -14 179 2 5 1505 3322 146 52 138 chr6 120649113 120649371 -28867666 - Lx2A1 LINE L1 -750 5127 4871 5 1505 531 0 0 0 chr6 120649912 120649971 -28867066 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 5 1505 219 225 0 0 chr6 120649971 120650011 -28867026 + (TTCG)n Simple_repeat Simple_repeat 3 42 0 5 1505 26 50 0 0 chr6 120650962 120651002 -28866035 + AT_rich Low_complexity Low_complexity 1 40 0 5 1505 204 125 0 0 chr6 120651205 120651237 -28865800 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1505 579 232 43 21 chr6 120651241 120651382 -28865655 - B1_Mur4 SINE Alu -5 145 2 5 1505 683 279 16 10 chr6 120651516 120651708 -28865329 + B3 SINE B2 9 201 -15 5 1505 213 39 0 0 chr6 120651709 120651735 -28865302 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 1505 21 36 0 0 chr6 120651767 120651795 -28865242 + AT_rich Low_complexity Low_complexity 1 28 0 5 1505 537 221 91 21 chr6 120652055 120652198 -28864839 + B3 SINE B2 60 212 -4 5 1505 27 0 0 0 chr6 120652300 120652327 -28864710 + AT_rich Low_complexity Low_complexity 1 27 0 5 1505 508 241 14 19 chr6 120652370 120652507 -28864530 - B3A SINE B2 -15 201 63 5 1505 392 200 248 0 chr6 120652559 120652664 -28864373 + B1_Mur2 SINE Alu 17 147 -2 5 1505 22 56 0 0 chr6 120652664 120652700 -28864337 + AT_rich Low_complexity Low_complexity 1 36 0 5 1505 1131 82 0 7 chr6 120652788 120652936 -28864101 + B1_Mus1 SINE Alu 1 147 -1 5 1505 210 71 0 0 chr6 120652937 120652965 -28864072 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1505 250 246 49 0 chr6 120652967 120653028 -28864009 - RSINE1 SINE B4 -46 119 56 6 1505 23 0 0 0 chr6 120653210 120653233 -28863804 + AT_rich Low_complexity Low_complexity 1 23 0 6 1505 252 233 0 0 chr6 120653581 120653624 -28863413 - B1_Mur4 SINE Alu -106 44 2 6 1505 1237 123 6 0 chr6 120653839 120654018 -28863019 + B2_Mm2 SINE B2 2 181 -14 6 1505 660 174 68 8 chr6 120654324 120654457 -28862580 - B1_Mur2 SINE Alu -6 143 3 6 1505 386 232 269 6 chr6 120655834 120655990 -28861047 + B3A SINE B2 2 198 0 6 1505 1417 65 5 32 chr6 120656200 120656390 -28860647 + B2_Mm1a SINE B2 1 185 -8 6 1505 320 250 33 0 chr6 120656399 120656491 -28860546 + Lx5 LINE L1 6235 6329 -721 6 1505 1301 321 61 41 chr6 120656511 120657067 -28859970 + Lx5 LINE L1 6484 7050 0 6 1505 539 154 235 17 chr6 120657090 120657209 -28859828 + B1_Mur4 SINE Alu 5 149 -1 6 1505 393 212 139 6 chr6 120658122 120658288 -28858749 - RCHARR1 DNA MER1_type -60 914 727 6 1505 554 227 105 8 chr6 120658346 120658479 -28858558 - B1_Mur2 SINE Alu -2 147 2 6 1505 1183 261 99 56 chr6 120658490 120658646 -28858391 - RCHARR1 DNA MER1_type -452 522 360 6 1505 827 174 35 0 chr6 120658646 120658790 -28858247 + B1_Mur2 SINE Alu 1 149 0 6 1505 1183 261 99 56 chr6 120658790 120659119 -28857918 - RCHARR1 DNA MER1_type -615 359 16 6 1505 212 309 107 0 chr6 120659490 120659574 -28857463 + B1F1 SINE Alu 1 93 -56 6 1505 363 236 83 108 chr6 120659840 120659997 -28857040 + RSINE1 SINE B4 2 154 -11 6 1505 627 216 8 16 chr6 120660016 120660143 -28856894 - B1_Mur2 SINE Alu 0 149 24 6 1505 441 286 71 0 chr6 120661568 120661694 -28855343 - B3 SINE B2 -21 195 61 6 1505 468 311 0 22 chr6 120662247 120662385 -28854652 + RSINE1 SINE B4 3 137 -28 6 1505 254 311 106 10 chr6 120662722 120662826 -28854211 + Charlie12 DNA MER1_type 2585 2698 -175 6 1505 236 137 107 27 chr6 120662999 120663074 -28853963 + Charlie12 DNA MER1_type 2690 2770 -103 6 1505 204 180 0 0 chr6 120664449 120664490 -28852547 + T-rich Low_complexity Low_complexity 21 61 0 6 1505 1025 66 73 0 chr6 120664490 120664627 -28852410 - B1_Mm SINE Alu 0 147 1 6 1505 204 180 0 0 chr6 120664627 120664646 -28852391 + T-rich Low_complexity Low_complexity 2 20 0 6 1505 260 321 25 0 chr6 120664951 120665032 -28852005 - B3A SINE B2 -107 91 9 6 1505 395 206 47 38 chr6 120667368 120667474 -28849563 - L1MB2 LINE L1 -54 6117 6011 6 1505 290 264 241 0 chr6 120667716 120667803 -28849234 - PB1D9 SINE Alu -12 108 1 6 1505 423 70 0 40 chr6 120667876 120667951 -28849086 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1505 356 247 0 13 chr6 120668826 120668904 -28848133 - RSINE1 SINE B4 -87 78 2 6 1505 604 242 185 23 chr6 120670024 120670240 -28846797 + B4 SINE B4 1 251 -41 6 1505 291 135 0 37 chr6 120670476 120670530 -28846507 - B2_Mm2 SINE B2 -94 101 50 6 1505 967 133 6 6 chr6 120670602 120670761 -28846276 - B2_Mm1t SINE B2 -27 166 8 6 1505 296 239 67 22 chr6 120671300 120671390 -28845647 - PB1 SINE Alu -3 124 31 6 1505 27 62 0 0 chr6 120671668 120671716 -28845321 + AT_rich Low_complexity Low_complexity 1 48 0 6 1505 297 186 114 0 chr6 120671840 120671910 -28845127 - ID_B1 SINE B4 -37 187 110 6 1505 315 0 0 0 chr6 120672232 120672267 -28844770 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 6 1505 371 159 0 87 chr6 120672276 120672345 -28844692 - B1_Mur4 SINE Alu -86 64 2 6 1505 385 276 0 10 chr6 120672480 120672579 -28844458 - PB1D9 SINE Alu -21 99 2 6 1505 1021 101 155 0 chr6 120672889 120673057 -28843980 - B2_Mm2 SINE B2 0 195 2 6 1505 404 236 0 54 chr6 120673058 120673170 -28843867 + B3 SINE B2 101 206 -10 6 1505 312 289 72 0 chr6 120673481 120673578 -28843459 + PB1D7 SINE Alu 1 104 -16 6 1505 35 41 0 0 chr6 120673752 120673801 -28843236 + AT_rich Low_complexity Low_complexity 1 49 0 6 1505 285 235 28 42 chr6 120673962 120674033 -28843004 - ID_B1 SINE B4 -104 120 51 6 1505 289 284 102 56 chr6 120674051 120674267 -28842770 - Charlie4a DNA MER1_type -167 341 116 6 1505 321 171 29 0 chr6 120674415 120674485 -28842552 - B1F SINE Alu -63 86 15 6 1505 264 290 16 0 chr6 120674840 120674902 -28842135 + tRNA-Ala-GCA tRNA tRNA 1 63 -12 6 1505 542 187 18 36 chr6 120675377 120675488 -28841549 - B1_Mur4 SINE Alu -24 126 18 6 1505 432 97 0 0 chr6 120675504 120675566 -28841471 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1505 390 278 24 132 chr6 120675566 120675732 -28841305 - B3 SINE B2 -22 194 47 6 1505 943 87 205 0 chr6 120675844 120676005 -28841032 - B2_Mm2 SINE B2 -1 194 1 6 1505 350 275 157 1 chr6 120676743 120676972 -28840065 - L1M5 LINE L1 -610 5749 5490 6 1505 490 266 49 0 chr6 120677623 120677766 -28839271 - B3 SINE B2 0 216 67 6 1505 1528 58 16 0 chr6 120677816 120678004 -28839033 + B2_Mm1a SINE B2 1 191 -2 6 1505 406 324 49 21 chr6 120678019 120678161 -28838876 + ID_B1 SINE B4 6 151 -73 6 1505 738 221 150 14 chr6 120678168 120678388 -28838649 - RMER19A LTR ERVK -291 446 197 6 1505 310 191 63 0 chr6 120678380 120678443 -28838594 + B1_Mur3 SINE Alu 63 129 -20 6 1505 878 251 21 0 chr6 120678533 120678720 -28838317 - B3 SINE B2 -25 191 1 6 1505 823 99 118 37 chr6 120678774 120678910 -28838127 - B1_Mus1 SINE Alu 0 148 2 6 1505 821 190 93 20 chr6 120678965 120679169 -28837868 - RMER1B Other Other 0 1066 848 6 1505 1036 92 0 0 chr6 120679170 120679312 -28837725 - B2_Mm2 SINE B2 -40 155 14 6 1505 1018 232 100 11 chr6 120679313 120679583 -28837454 - RMER1B Other Other -217 849 556 6 1505 390 264 128 0 chr6 120679697 120679822 -28837215 + B1_Mur1 SINE Alu 9 149 0 6 1505 1089 60 0 0 chr6 120679912 120680045 -28836992 - B1_Mus2 SINE Alu -14 133 1 6 1505 757 107 78 32 chr6 120680045 120680199 -28836838 - URR1A DNA MER1_type -9 217 57 6 1505 421 177 38 0 chr6 120680309 120680388 -28836649 + RSINE1 SINE B4 4 85 -80 6 1505 612 216 29 43 chr6 120680481 120680621 -28836416 - B1_Mur3 SINE Alu -10 139 2 6 1505 614 204 94 53 chr6 120680653 120680824 -28836213 + B2_Mm2 SINE B2 2 179 -16 6 1505 3513 107 43 52 chr6 120681731 120681823 -28835214 + RLTR31B_Mm LTR ERVK 1 101 -456 6 1505 216 0 0 0 chr6 120681823 120681847 -28835190 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 6 1505 3513 107 43 52 chr6 120681847 120682316 -28834721 + RLTR31B_Mm LTR ERVK 102 556 -1 6 1505 279 198 98 0 chr6 120682550 120682627 -28834410 - B1_Mus1 SINE Alu -56 91 9 6 1505 180 97 0 0 chr6 120682670 120682701 -28834336 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1505 1234 41 0 0 chr6 120682701 120682847 -28834190 - B1_Mus2 SINE Alu 0 147 2 6 1505 769 231 6 6 chr6 120683021 120683182 -28833855 + B3A SINE B2 3 163 -35 6 1505 219 69 0 0 chr6 120683191 120683220 -28833817 + (CATA)n Simple_repeat Simple_repeat 4 32 0 6 1505 318 189 6 2 chr6 120683312 120683380 -28833657 + PB1D10 SINE Alu 15 84 -36 6 1505 594 201 77 28 chr6 120685149 120685292 -28831745 - B1_Mur4 SINE Alu 0 150 1 6 1505 25 0 0 0 chr6 120685345 120685370 -28831667 + AT_rich Low_complexity Low_complexity 1 25 0 6 1505 1203 154 19 9 chr6 120685528 120685744 -28831293 - MTC LTR MaLR -8 413 196 6 1505 989 72 56 28 chr6 120685765 120685908 -28831129 + B1_Mus2 SINE Alu 1 147 0 6 1505 442 209 0 0 chr6 120685973 120686059 -28830978 - B3A SINE B2 -66 132 47 6 1505 953 160 15 87 chr6 120686077 120686336 -28830701 - Lx3C LINE L1 0 6981 6736 6 1505 500 62 0 0 chr6 120686333 120686398 -28830639 + Lx3B LINE L1 6359 6423 -550 6 1505 313 207 0 0 chr6 120686399 120686457 -28830580 + PB1D10 SINE Alu 38 95 -22 6 1505 550 160 141 16 chr6 120687441 120687562 -28829475 - B1_Mus1 SINE Alu 0 148 13 6 1505 260 177 163 12 chr6 120687821 120687901 -28829136 + B1_Mus1 SINE Alu 26 115 -5 6 1505 319 282 19 28 chr6 120687935 120688041 -28828996 + PB1 SINE Alu 21 125 -2 6 1505 461 296 79 66 chr6 120688819 120688971 -28828066 + B3A SINE B2 14 167 -31 6 1505 23 0 0 0 chr6 120689084 120689107 -28827930 + AT_rich Low_complexity Low_complexity 1 23 0 6 1505 266 228 0 34 chr6 120689370 120689429 -28827608 - Lx8 LINE L1 -246 7227 7171 6 1505 310 280 0 13 chr6 120689679 120689765 -28827272 - BC1_Mm scRNA scRNA -67 85 1 6 1505 382 229 19 68 chr6 120690218 120690321 -28826716 + B1F SINE Alu 1 98 -51 6 1505 434 184 26 35 chr6 120690560 120690673 -28826364 - Lx9 LINE L1 -8 7636 7525 6 1505 342 219 0 0 chr6 120690696 120690769 -28826268 - Lx9 LINE L1 -256 7388 7316 6 1505 366 207 49 0 chr6 120691335 120691417 -28825620 - PB1D9 SINE Alu -1 119 34 6 1505 1545 58 5 10 chr6 120691442 120691635 -28825402 - B2_Mm1a SINE B2 0 193 2 6 1505 368 283 147 5 chr6 120691727 120691890 -28825147 + B3A SINE B2 22 205 -11 6 1505 320 274 10 40 chr6 120691988 120692087 -28824950 + PB1D10 SINE Alu 1 96 -21 6 1505 252 0 0 0 chr6 120692743 120692771 -28824266 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1505 471 18 0 0 chr6 120693161 120693217 -28823820 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1505 256 284 60 0 chr6 120693224 120693291 -28823746 - RSINE1 SINE B4 -80 85 15 6 1505 480 221 35 9 chr6 120695920 120696034 -28821003 - B1F1 SINE Alu 0 149 33 6 1505 401 210 170 53 chr6 120696091 120696262 -28820775 + B3A SINE B2 3 193 -5 6 1505 335 273 98 29 chr6 120696270 120696372 -28820665 + PB1D9 SINE Alu 2 110 -10 6 1505 428 181 204 105 chr6 120696655 120696846 -28820191 + B3 SINE B2 7 216 0 6 1505 394 246 77 31 chr6 120697171 120697301 -28819736 + B1F SINE Alu 9 144 -5 6 1505 664 225 29 0 chr6 120697479 120697617 -28819420 - B1_Mur1 SINE Alu -6 143 2 6 1505 214 364 15 0 chr6 120697641 120697707 -28819330 + ID_B1 SINE B4 83 149 -75 7 1505 500 258 31 0 chr6 120697807 120697935 -28819102 - RSINE1 SINE B4 -15 150 19 7 1505 422 269 146 0 chr6 120697933 120698063 -28818974 - ID_B1 SINE B4 -14 210 62 7 1505 1390 192 159 6 chr6 120698252 120698603 -28818434 - MTD LTR MaLR -14 405 1 7 1505 412 263 126 44 chr6 120699243 120699426 -28817611 + B3A SINE B2 1 198 0 7 1505 454 278 118 0 chr6 120699754 120699898 -28817139 + B4 SINE B4 77 237 -55 7 1505 294 267 0 62 chr6 120699894 120699990 -28817047 + ID_B1 SINE B4 64 153 -71 7 1505 495 280 0 16 chr6 120699922 120700049 -28816988 + B1_Mus2 SINE Alu 6 130 -17 7 1505 306 0 0 0 chr6 120700272 120700306 -28816731 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1505 366 23 0 0 chr6 120700351 120700394 -28816643 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 7 1505 237 116 0 44 chr6 120700461 120700506 -28816531 - B3A SINE B2 -154 44 2 7 1505 381 216 216 0 chr6 120700513 120700601 -28816436 - PB1D9 SINE Alu -9 111 5 7 1505 186 43 0 0 chr6 120701319 120701342 -28815695 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 7 1505 533 261 173 5 chr6 120701346 120701531 -28815506 - ID_B1 SINE B4 -6 218 3 7 1505 492 235 17 25 chr6 120701660 120701778 -28815259 - B1_Mur1 SINE Alu 0 149 33 7 1505 356 286 31 0 chr6 120701998 120702096 -28814941 - PB1D7 SINE Alu -19 101 1 7 1505 777 176 197 38 chr6 120702118 120702301 -28814736 - B3 SINE B2 -4 212 1 7 1505 328 269 64 0 chr6 120702384 120702462 -28814575 + ID_B1 SINE B4 130 212 -12 7 1505 499 267 30 8 chr6 120702835 120702967 -28814070 + RSINE1 SINE B4 30 164 -1 7 1505 1165 48 14 7 chr6 120702992 120703138 -28813899 + B1_Mus1 SINE Alu 2 148 0 7 1505 547 171 0 19 chr6 120703172 120703279 -28813758 + B1_Mur3 SINE Alu 43 147 -2 7 1505 313 279 63 0 chr6 120703279 120703358 -28813679 + B3 SINE B2 43 126 -90 7 1505 1210 98 81 0 chr6 120703409 120703582 -28813455 + B2_Mm2 SINE B2 3 189 -6 7 1505 228 274 104 10 chr6 120704159 120704255 -28812782 + PB1D9 SINE Alu 15 119 -1 7 1505 286 268 20 20 chr6 120704942 120705041 -28811996 - ORR1E LTR MaLR -222 137 39 7 1505 210 91 0 0 chr6 120705094 120705127 -28811910 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 7 1505 578 275 22 7 chr6 120705145 120705284 -28811753 - B1_Mur1 SINE Alu -4 145 5 7 1505 490 214 52 37 chr6 120705371 120705507 -28811530 - B1F SINE Alu 0 149 12 7 1505 502 276 0 52 chr6 120705778 120705912 -28811125 - B3 SINE B2 -53 163 37 7 1505 358 277 32 38 chr6 120707021 120707127 -28809910 + ID_B1 SINE B4 39 175 -117 7 1505 314 109 0 0 chr6 120707127 120707173 -28809864 + PB1D9 SINE Alu 10 55 -65 7 1505 358 277 32 38 chr6 120707173 120707206 -28809831 + ID_B1 SINE B4 176 220 -72 7 1505 192 40 0 0 chr6 120707209 120707234 -28809803 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1505 247 221 147 0 chr6 120707248 120707316 -28809721 + ID_B1 SINE B4 130 207 -17 7 1505 325 219 215 16 chr6 120708912 120709033 -28808004 - B1_Mur2 SINE Alu 0 149 5 7 1505 1688 31 0 0 chr6 120709079 120709271 -28807766 + B2_Mm1t SINE B2 2 193 0 7 1505 338 286 0 0 chr6 120709358 120709435 -28807602 - RSINE1 SINE B4 -86 79 3 7 1505 212 254 29 29 chr6 120709470 120709539 -28807498 - ID_B1 SINE B4 -81 143 75 7 1505 343 261 160 34 chr6 120709817 120709936 -28807101 + B1_Mm SINE Alu 14 147 0 7 1505 513 288 38 25 chr6 120710127 120710284 -28806753 - B3 SINE B2 -57 159 1 7 1505 1140 75 6 0 chr6 120710473 120710632 -28806405 + B2_Mm2 SINE B2 1 160 -35 7 1505 342 0 0 0 chr6 120710636 120710674 -28806363 + (CATA)n Simple_repeat Simple_repeat 2 39 0 7 1505 744 76 246 0 chr6 120712824 120712942 -28804095 + B1_Mm SINE Alu 1 147 0 7 1505 305 297 90 0 chr6 120712972 120713083 -28803954 - PB1 SINE Alu -4 123 3 7 1505 317 233 95 19 chr6 120713327 120713432 -28803605 + B1_Mur4 SINE Alu 1 113 -37 7 1505 314 226 122 45 chr6 120713631 120713774 -28803263 + PB1D9 SINE Alu 1 136 -13 7 1505 607 148 165 39 chr6 120713846 120713973 -28803064 + B1_Mur3 SINE Alu 1 143 -6 7 1505 408 211 19 37 chr6 120714110 120714218 -28802819 - PB1D10 SINE Alu 0 117 12 7 1505 626 129 88 29 chr6 120714324 120714460 -28802577 - B1_Mur2 SINE Alu 0 149 6 7 1505 407 261 50 38 chr6 120714460 120714482 -28802555 - B4 SINE B4 -66 225 66 7 1505 243 0 0 0 chr6 120714619 120714646 -28802391 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1505 575 193 126 0 chr6 120714646 120714765 -28802272 - B1_Mus2 SINE Alu -11 136 3 7 1505 249 233 122 39 chr6 120714972 120715128 -28801909 - L1MC4 LINE L1 -364 7678 7510 7 1505 306 216 56 11 chr6 120715717 120715806 -28801231 + B1_Mus1 SINE Alu 3 95 -53 7 1505 584 182 10 48 chr6 120715754 120715896 -28801141 - B3 SINE B2 -55 143 7 7 1505 25 0 0 0 chr6 120716889 120716914 -28800123 + AT_rich Low_complexity Low_complexity 1 25 0 7 1506 217 262 238 0 chr6 120719792 120719914 -28797123 + ID_B1 SINE B4 1 151 -73 7 1506 250 287 46 0 chr6 120719852 120719939 -28797098 + PB1D10 SINE Alu 6 96 -21 7 1506 259 250 12 62 chr6 120719959 120720040 -28796997 + ID4 SINE ID 2 78 -5 7 1506 399 183 260 0 chr6 120720364 120720468 -28796569 + B1F2 SINE Alu 1 131 -18 7 1506 341 262 1 24 chr6 120721837 120721931 -28795106 - B4 SINE B4 -70 95 2 7 1506 480 288 218 42 chr6 120722385 120722586 -28794451 + B3 SINE B2 1 216 0 7 1506 1170 49 14 0 chr6 120722633 120722776 -28794261 + B1_Mus2 SINE Alu 2 146 -1 7 1506 277 200 150 0 chr6 120722854 120722934 -28794103 + ID_B1 SINE B4 129 220 -4 7 1506 376 246 127 0 chr6 120723809 120723927 -28793110 - MER2B DNA MER2_type 0 336 204 7 1506 416 261 256 0 chr6 120725353 120725529 -28791508 - ID_B1 SINE B4 -2 222 2 7 1506 273 284 16 148 chr6 120725537 120725665 -28791372 - PB1D7 SINE Alu 0 120 10 7 1506 658 207 37 7 chr6 120725892 120726028 -28791009 + B1F2 SINE Alu 9 148 -1 7 1506 679 196 57 118 chr6 120726885 120726916 -28790121 + ID_B1 SINE B4 53 149 -143 7 1506 1091 63 7 0 chr6 120726916 120727058 -28789979 + B1_Mus1 SINE Alu 6 148 0 7 1506 679 196 57 118 chr6 120727058 120727086 -28789951 + ID_B1 SINE B4 150 245 -47 7 1506 290 270 0 13 chr6 120727269 120727344 -28789693 + PB1D7 SINE Alu 40 113 -7 7 1506 607 218 98 0 chr6 120727348 120727481 -28789556 + B1_Mur2 SINE Alu 1 146 -3 7 1506 261 0 0 0 chr6 120727485 120727514 -28789523 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1506 277 224 165 0 chr6 120727788 120727873 -28789164 - RSINE1 SINE B4 -57 108 10 7 1506 481 269 46 8 chr6 120727977 120728108 -28788929 + RSINE1 SINE B4 1 136 -29 7 1506 301 243 392 0 chr6 120728133 120728281 -28788756 - B3 SINE B2 -10 206 1 7 1506 1035 110 0 20 chr6 120729173 120729321 -28787716 + B1_Mus1 SINE Alu 3 147 -1 7 1506 27 29 0 0 chr6 120729335 120729369 -28787668 + AT_rich Low_complexity Low_complexity 1 34 0 7 1506 772 210 51 0 chr6 120729373 120729530 -28787507 + B2_Mm2 SINE B2 1 165 -30 7 1506 348 264 221 16 chr6 120729570 120729697 -28787340 + B3 SINE B2 26 178 -38 7 1506 234 0 0 0 chr6 120729698 120729724 -28787313 + (CATA)n Simple_repeat Simple_repeat 1 26 0 7 1506 534 238 123 0 chr6 120730369 120730491 -28786546 + B3 SINE B2 1 137 -79 7 1506 544 222 175 23 chr6 120730539 120730710 -28786327 + B3A SINE B2 1 197 -1 7 1506 1213 54 7 0 chr6 120730729 120730876 -28786161 + B1_Mus1 SINE Alu 1 148 0 7 1506 305 0 50 0 chr6 120730880 120730920 -28786117 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 7 1506 1124 79 13 0 chr6 120730920 120731072 -28785965 + B2_Mm1t SINE B2 27 180 -13 7 1506 425 279 36 0 chr6 120731132 120731243 -28785794 + PB1D7 SINE Alu 1 115 -5 7 1506 449 263 17 8 chr6 120731249 120731368 -28785669 + PB1D9 SINE Alu 1 120 0 7 1506 843 158 0 8 chr6 120731373 120731507 -28785530 + B1_Mus1 SINE Alu 1 133 -15 7 1506 430 262 10 10 chr6 120731793 120731897 -28785140 + B1F SINE Alu 46 149 0 7 1506 1055 79 21 0 chr6 120731904 120732044 -28784993 + B1_Mur4 SINE Alu 1 143 -7 7 1506 1069 208 24 38 chr6 120732912 120733122 -28783915 - B3 SINE B2 0 216 10 7 1506 351 0 0 0 chr6 120733430 120733469 -28783568 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1506 228 192 56 0 chr6 120733469 120733530 -28783507 - PB1D10 SINE Alu -14 106 41 7 1506 438 215 93 9 chr6 120733600 120733708 -28783329 + PB1D7 SINE Alu 3 119 -1 7 1506 327 275 32 42 chr6 120733794 120733889 -28783148 + ID_B1 SINE B4 84 177 -47 7 1506 1573 62 0 0 chr6 120733927 120734120 -28782917 - B2_Mm1a SINE B2 0 193 1 7 1506 291 54 0 0 chr6 120734700 120734737 -28782300 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1506 493 264 46 8 chr6 120734777 120734907 -28782130 + ID_B1 SINE B4 81 215 -9 7 1506 584 259 20 13 chr6 120735242 120735284 -28781753 - B3 SINE B2 0 216 176 7 1506 306 73 0 0 chr6 120735284 120735325 -28781712 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1506 584 259 20 13 chr6 120735325 120735431 -28781606 - B3 SINE B2 -41 175 67 7 1506 423 313 52 0 chr6 120736885 120737019 -28780018 + ID_B1 SINE B4 82 222 -2 7 1506 735 265 55 5 chr6 120737108 120737133 -28779904 + B3 SINE B2 1 29 -187 7 1506 743 0 0 11 chr6 120737133 120737221 -28779816 + (GA)n Simple_repeat Simple_repeat 1 87 0 7 1506 735 265 55 5 chr6 120737221 120737396 -28779641 + B3 SINE B2 30 210 -6 7 1506 915 157 29 0 chr6 120737435 120737575 -28779462 - B1_Mur4 SINE Alu -6 144 1 8 1506 718 189 0 0 chr6 120737617 120737728 -28779309 + PB1D9 SINE Alu 1 111 -9 8 1506 395 240 165 60 chr6 120737728 120737742 -28779295 + B4 SINE B4 127 228 -64 8 1506 233 294 118 0 chr6 120737865 120737950 -28779087 + PB1D10 SINE Alu 17 111 -6 8 1506 339 303 110 0 chr6 120737953 120738062 -28778975 + RSINE1 SINE B4 41 161 -4 8 1506 417 225 52 35 chr6 120738565 120738680 -28778357 - PB1D9 SINE Alu -2 118 2 8 1506 872 159 30 0 chr6 120738917 120739049 -28777988 + B1_Mur3 SINE Alu 1 136 -13 8 1506 1045 106 75 43 chr6 120739057 120739244 -28777793 - B2_Mm2 SINE B2 0 195 3 8 1506 504 32 0 0 chr6 120739728 120739790 -28777247 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 8 1506 1199 78 0 0 chr6 120739796 120739949 -28777088 - B2_Mm2 SINE B2 -41 154 2 8 1506 878 256 16 0 chr6 120739990 120740181 -28776856 + B3 SINE B2 2 195 -21 8 1506 243 0 0 0 chr6 120740310 120740337 -28776700 + (C)n Simple_repeat Simple_repeat 1 27 0 8 1506 539 214 45 108 chr6 120740533 120740690 -28776347 + B4 SINE B4 72 218 -74 8 1506 1002 106 0 14 chr6 120740555 120740698 -28776339 + B1_Mus2 SINE Alu 6 146 -1 8 1506 217 299 75 108 chr6 120741290 120741410 -28775627 - PB1D10 SINE Alu 0 117 2 8 1506 417 66 0 0 chr6 120741539 120741600 -28775437 + (CAGC)n Simple_repeat Simple_repeat 4 64 0 8 1506 418 243 84 37 chr6 120741600 120741707 -28775330 - B1F SINE Alu -37 112 1 8 1506 257 198 153 47 chr6 120743369 120743454 -28773583 + PB1D10 SINE Alu 22 115 -2 8 1506 511 249 45 28 chr6 120744326 120744481 -28772556 - B3A SINE B2 -9 186 30 8 1506 384 299 133 20 chr6 120744649 120744799 -28772238 + ID_B1 SINE B4 57 223 -1 8 1506 477 0 0 0 chr6 120745008 120745061 -28771976 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1506 241 200 350 0 chr6 120745125 120745205 -28771832 - PB1 SINE Alu -17 110 3 8 1506 563 275 130 16 chr6 120746578 120746770 -28770267 - B4A SINE B4 -8 284 71 8 1506 2027 181 137 12 chr6 120746797 120747278 -28769759 - Lx5 LINE L1 0 7050 6510 8 1506 283 213 9 2 chr6 120747278 120747338 -28769699 - B4 SINE B4 -91 74 11 8 1506 218 242 145 0 chr6 120747477 120747539 -28769498 - PB1D7 SINE Alu -12 108 38 8 1506 871 94 173 0 chr6 120747584 120747711 -28769326 - B1_Mur3 SINE Alu 0 149 1 8 1506 380 255 109 69 chr6 120748515 120748616 -28768421 - PB1D10 SINE Alu -10 107 3 8 1506 258 241 0 0 chr6 120748856 120748909 -28768128 - PB1 SINE Alu -8 141 77 8 1506 238 330 122 86 chr6 120749103 120749251 -28767786 + MER46C DNA MER2_type 2 165 -173 8 1506 373 233 18 104 chr6 120749251 120749414 -28767623 - B1F SINE Alu 0 149 1 8 1506 238 330 122 86 chr6 120749414 120749520 -28767517 + MER46C DNA MER2_type 166 264 -74 8 1506 268 243 43 0 chr6 120749520 120749590 -28767447 - ID2 SINE ID -9 74 2 8 1506 319 233 211 0 chr6 120749768 120749858 -28767179 + PB1D7 SINE Alu 1 109 -11 8 1506 1474 200 199 6 chr6 120750411 120750555 -28766482 + MTC LTR MaLR 1 159 -262 8 1506 1412 78 11 0 chr6 120750555 120750746 -28766291 + B2_Mm1a SINE B2 1 193 0 8 1506 1474 200 199 6 chr6 120750746 120750953 -28766084 + MTC LTR MaLR 160 419 -2 8 1506 755 241 49 10 chr6 120751861 120752066 -28764971 + B3 SINE B2 3 215 -1 8 1506 267 216 0 46 chr6 120752390 120752482 -28764555 + B1_Mur1 SINE Alu 65 148 -2 8 1506 1171 88 13 0 chr6 120752506 120752665 -28764372 - B2_Mm2 SINE B2 -34 161 1 8 1506 243 321 0 0 chr6 120752706 120752762 -28764275 - RSINE1 SINE B4 -29 136 81 8 1506 1243 175 109 8 chr6 120752828 120753013 -28764024 + MTC LTR MaLR 1 211 -210 8 1506 681 208 34 27 chr6 120753013 120753161 -28763876 + B1_Mur1 SINE Alu 1 149 0 8 1506 1243 175 109 8 chr6 120753161 120753223 -28763814 + MTC LTR MaLR 212 273 -148 8 1506 316 282 0 82 chr6 120753681 120753766 -28763271 - ID4_ SINE ID -2 81 4 8 1506 435 308 5 81 chr6 120754512 120754575 -28762462 + ID_B1 SINE B4 33 215 -9 8 1506 756 142 44 7 chr6 120754575 120754710 -28762327 + B1_Mur3 SINE Alu 1 140 -9 8 1506 222 37 0 0 chr6 120754710 120754737 -28762300 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 8 1506 788 253 31 21 chr6 120754770 120754964 -28762073 + ID_B1 SINE B4 5 200 -24 8 1506 1168 42 14 0 chr6 120755051 120755195 -28761842 - B1_Mus2 SINE Alu 0 147 2 8 1506 281 312 41 55 chr6 120755302 120755448 -28761589 + BC1_Mm scRNA scRNA 2 145 -7 8 1506 512 274 92 27 chr6 120755564 120755748 -28761289 - ID_B1 SINE B4 -1 223 28 8 1506 852 160 14 7 chr6 120755926 120756071 -28760966 + B1_Mur4 SINE Alu 5 150 0 8 1506 279 104 0 0 chr6 120756143 120756191 -28760846 + (T)n Simple_repeat Simple_repeat 1 48 0 8 1506 1297 27 0 0 chr6 120756191 120756337 -28760700 - B1_Mus2 SINE Alu 0 147 2 8 1506 616 245 146 7 chr6 120756343 120756487 -28760550 + B3 SINE B2 35 198 -18 8 1506 279 204 0 69 chr6 120756563 120756621 -28760416 - ID_B1 SINE B4 -3 221 168 8 1506 258 260 70 40 chr6 120756651 120756751 -28760286 - PB1D10 SINE Alu -11 106 4 8 1506 842 83 41 0 chr6 120757011 120757132 -28759905 - B1_Mur4 SINE Alu -5 145 20 8 1506 353 101 7 1 chr6 120757823 120757881 -28759156 - B1_Mur1 SINE Alu 0 147 71 8 1506 555 240 113 7 chr6 120758182 120758333 -28758704 + ID_B1 SINE B4 3 169 -55 8 1506 770 150 6 103 chr6 120758657 120758813 -28758224 - B1_Mus1 SINE Alu 0 148 8 8 1506 836 271 18 0 chr6 120758828 120758998 -28758039 - B3A SINE B2 -24 174 2 8 1506 362 246 109 21 chr6 120759119 120759228 -28757809 - PB1D10 SINE Alu 0 117 4 8 1506 1424 73 15 40 chr6 120759275 120759475 -28757562 + B2_Mm2 SINE B2 1 195 0 8 1506 638 183 26 9 chr6 120759500 120759616 -28757421 + PB1D9 SINE Alu 1 118 -2 8 1506 577 283 34 7 chr6 120759636 120759782 -28757255 + RSINE1 SINE B4 2 151 -14 8 1506 2475 171 126 26 chr6 120759822 120760202 -28756835 + Lx7 LINE L1 6808 7235 -461 8 1506 2246 135 54 11 chr6 120760202 120760554 -28756483 + ORR1B2 LTR MaLR 1 367 0 8 1506 2475 171 126 26 chr6 120760554 120760793 -28756244 + Lx7 LINE L1 7236 7489 -207 8 1506 1202 62 7 0 chr6 120760807 120760953 -28756084 + B1_Mus1 SINE Alu 2 148 0 8 1506 1355 87 11 5 chr6 120761027 120761212 -28755825 + B2_Mm2 SINE B2 1 186 -9 8 1506 893 137 7 33 chr6 120761380 120761531 -28755506 - B1_Mus2 SINE Alu 0 147 1 8 1506 480 175 157 32 chr6 120761538 120761675 -28755362 - B3A SINE B2 -3 195 61 8 1506 316 155 69 0 chr6 120761673 120761731 -28755306 - B3A SINE B2 -76 122 61 8 1506 316 155 69 0 chr6 120761729 120761787 -28755250 - B3A SINE B2 -76 122 61 8 1506 594 177 35 0 chr6 120761785 120761898 -28755139 - B3A SINE B2 -76 122 6 8 1506 556 265 96 15 chr6 120761908 120762107 -28754930 + ID_B1 SINE B4 10 224 0 8 1506 2823 101 67 37 chr6 120762279 120762740 -28754297 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1506 4371 51 4 143 chr6 120762740 120763501 -28753536 + IAPEz-int LTR ERVK 8 662 -5819 8 1506 907 50 0 8 chr6 120763501 120763621 -28753416 + IAPEz-int LTR ERVK 1359 1477 -5004 8 1506 1724 110 0 0 chr6 120763622 120763868 -28753169 + IAPEz-int LTR ERVK 2252 2497 -5183 8 1506 884 88 24 0 chr6 120763863 120763988 -28753049 + IAPEz-int LTR ERVK 4783 4910 -2770 8 1506 25997 9 1 0 chr6 120763988 120766942 -28750095 + IAPEz-int LTR ERVK 3525 6481 0 8 1506 2843 95 67 39 chr6 120766942 120767404 -28749633 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1506 420 252 58 52 chr6 120767404 120767576 -28749461 + B3A SINE B2 41 213 -3 8 1506 516 221 180 24 chr6 120767593 120767760 -28749277 - B2_Mm2 SINE B2 -2 193 1 8 1506 599 207 58 29 chr6 120768187 120768326 -28748711 + B1_Mur4 SINE Alu 3 145 -5 8 1506 186 295 197 0 chr6 120768675 120768797 -28748240 + L2b LINE L2 3010 3155 -220 8 1506 452 215 10 51 chr6 120768892 120768990 -28748047 - RSINE1 SINE B4 -61 104 11 8 1506 1123 173 175 8 chr6 120768971 120769239 -28747798 + MTD LTR MaLR 99 411 -8 8 1506 343 213 111 0 chr6 120769274 120769382 -28747655 + B1_Mur3 SINE Alu 1 119 -1 8 1506 228 330 78 22 chr6 120769930 120770020 -28747017 - MIRm SINE MIR -17 259 165 8 1506 249 108 0 0 chr6 120770187 120770224 -28746813 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1506 376 264 0 102 chr6 120770799 120770928 -28746109 + PB1D7 SINE Alu 7 118 -2 8 1506 651 112 0 0 chr6 120770939 120771037 -28746000 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 8 1506 22 0 0 0 chr6 120771320 120771342 -28745695 + AT_rich Low_complexity Low_complexity 1 22 0 8 1506 667 187 96 7 chr6 120771450 120771585 -28745452 + B1_Mur3 SINE Alu 3 149 0 8 1506 651 202 0 53 chr6 120771601 120771732 -28745305 + B3 SINE B2 7 130 -86 8 1506 241 301 35 35 chr6 120771785 120771871 -28745166 + ID_B1 SINE B4 123 208 -16 8 1506 699 72 385 28 chr6 120771956 120772099 -28744938 + B2_Mm2 SINE B2 2 195 0 8 1506 22 0 0 0 chr6 120772874 120772896 -28744141 + AT_rich Low_complexity Low_complexity 1 22 0 8 1506 613 114 9 9 chr6 120772956 120773062 -28743975 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 8 1506 923 141 14 0 chr6 120773076 120773218 -28743819 - B1_Mur4 SINE Alu -6 144 1 8 1506 267 274 0 0 chr6 120773318 120773369 -28743668 - ID_B1 SINE B4 -72 152 102 8 1506 749 138 209 25 chr6 120773371 120773534 -28743503 + B2_Mm2 SINE B2 1 193 -2 8 1506 199 54 54 0 chr6 120773601 120773638 -28743399 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1506 700 134 38 157 chr6 120773643 120773802 -28743235 + B1_Mur3 SINE Alu 7 146 -3 8 1506 303 327 117 9 chr6 120773820 120773885 -28743152 + ID SINE ID 4 80 -144 8 1506 211 342 37 25 chr6 120773885 120773966 -28743071 + PB1D10 SINE Alu 1 82 -35 8 1506 633 263 126 1 chr6 120774027 120774205 -28742832 + B3 SINE B2 2 198 0 9 1506 1499 68 16 0 chr6 120774275 120774465 -28742572 + B2_Mm2 SINE B2 2 194 -1 9 1506 252 232 62 132 chr6 120774541 120774591 -28742446 - RCHARR1 DNA MER1_type 0 974 932 9 1506 881 67 142 0 chr6 120774591 120774711 -28742326 + B1_Mus1 SINE Alu 2 138 -10 9 1506 207 0 0 0 chr6 120774711 120774734 -28742303 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1506 252 232 62 132 chr6 120774734 120774825 -28742212 - RCHARR1 DNA MER1_type -43 931 843 9 1506 1518 68 0 0 chr6 120774825 120775017 -28742020 - MTB LTR MaLR 0 400 209 9 1506 1175 49 0 0 chr6 120775002 120775145 -28741892 + MTA_Mm LTR MaLR 258 400 0 9 1506 6893 91 25 75 chr6 120775145 120776301 -28740736 + MTA_Mm-int LTR MaLR 1 1098 0 9 1506 3241 37 37 3 chr6 120776301 120776684 -28740353 + MTA_Mm LTR MaLR 1 396 0 9 1506 1258 232 73 8 chr6 120776687 120777044 -28739993 - RCHARR1 DNA MER1_type -156 818 439 9 1506 581 212 181 6 chr6 120777047 120777213 -28739824 - B3 SINE B2 -7 209 15 9 1506 1259 307 36 51 chr6 120777196 120777670 -28739367 - RCHARR1 DNA MER1_type -504 470 4 9 1506 275 237 11 0 chr6 120777673 120777766 -28739271 + (TG)n Simple_repeat Simple_repeat 1 94 0 9 1506 226 324 0 0 chr6 120777780 120777854 -28739183 + (TG)n Simple_repeat Simple_repeat 1 74 0 9 1506 813 200 54 5 chr6 120777857 120778043 -28738994 + B3A SINE B2 4 198 0 9 1506 972 138 14 0 chr6 120778070 120778215 -28738822 + B1_Mus1 SINE Alu 2 148 0 9 1506 750 242 0 18 chr6 120778321 120778485 -28738552 - RSINE1 SINE B4 -1 164 4 9 1506 260 325 0 12 chr6 120778485 120778569 -28738468 - ID_B1 SINE B4 -2 222 140 9 1506 422 299 30 0 chr6 120778596 120778730 -28738307 + ID_B1 SINE B4 1 138 -86 9 1506 4728 146 94 30 chr6 120778833 120778896 -28738141 + MTC-int LTR MaLR 42 107 -1151 9 1506 1034 61 45 0 chr6 120778896 120779028 -28738009 + B1_Mm SINE Alu 1 138 -9 9 1506 762 11 0 0 chr6 120779028 120779115 -28737922 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 9 1506 4728 146 94 30 chr6 120779115 120780084 -28736953 + MTC-int LTR MaLR 108 1140 -118 9 1506 1029 97 7 0 chr6 120780090 120780235 -28736802 - B1_Mur3 SINE Alu -2 147 2 9 1506 367 316 0 0 chr6 120780323 120780418 -28736619 + RSINE1 SINE B4 57 151 -14 9 1506 192 200 0 0 chr6 120780435 120780485 -28736552 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 9 1506 1687 26 0 0 chr6 120780507 120780697 -28736340 + B2_Mm1a SINE B2 1 190 -3 9 1506 222 224 0 65 chr6 120780784 120780846 -28736191 - PB1D10 SINE Alu 0 117 60 9 1506 266 252 222 46 chr6 120781788 120781896 -28735141 + ID_B1 SINE B4 78 204 -20 9 1506 436 296 49 0 chr6 120781911 120782053 -28734984 + B1F SINE Alu 1 149 0 9 1506 349 250 62 0 chr6 120782079 120782159 -28734878 + PB1D10 SINE Alu 6 90 -27 9 1506 634 297 40 26 chr6 120782351 120782579 -28734458 - MER2 DNA MER2_type -6 339 109 9 1506 273 263 102 29 chr6 120782634 120782771 -28734266 + RLTR42-int LTR ERVK 1175 1321 -4201 9 1506 1371 73 11 6 chr6 120782795 120782974 -28734063 + B2_Mm2 SINE B2 2 181 -14 9 1506 354 69 0 49 chr6 120783010 120783071 -28733966 + B2_Mm1a SINE B2 127 184 -9 9 1506 1468 75 16 0 chr6 120783612 120783798 -28733239 + B2_Mm2 SINE B2 2 190 -5 9 1506 1248 48 0 0 chr6 120783800 120783947 -28733090 + B1_Mus2 SINE Alu 1 147 0 9 1506 216 0 0 0 chr6 120783947 120783971 -28733066 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1506 377 253 42 0 chr6 120784251 120784346 -28732691 - ID_B1 SINE B4 -13 211 113 9 1506 962 211 0 0 chr6 120784343 120784518 -28732519 + B3 SINE B2 38 212 -4 9 1506 435 272 136 0 chr6 120784564 120784711 -28732326 + ID_B1 SINE B4 52 218 -6 9 1506 471 286 51 13 chr6 120784857 120785013 -28732024 - RSINE1 SINE B4 -2 163 2 9 1506 329 209 108 21 chr6 120785039 120785132 -28731905 - PB1D10 SINE Alu -2 115 15 9 1506 1318 99 21 5 chr6 120785393 120785585 -28731452 - B2_Mm2 SINE B2 0 195 1 9 1506 207 0 0 0 chr6 120787642 120787665 -28729372 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9 1506 981 53 104 22 chr6 120787665 120787800 -28729237 - B1_Mus1 SINE Alu 0 148 3 9 1506 433 239 137 0 chr6 120787968 120788085 -28728952 - B1_Mur2 SINE Alu -15 134 2 9 1506 286 239 29 43 chr6 120788085 120788155 -28728882 - RSINE1 SINE B4 -45 120 52 9 1506 1212 69 11 0 chr6 120788173 120788348 -28728689 - B2_Mm1t SINE B2 -6 187 11 9 1506 244 275 188 0 chr6 120788344 120788413 -28728624 - PB1D7 SINE Alu -33 87 6 9 1506 1259 34 0 0 chr6 120788524 120788671 -28728366 - B1_Mus2 SINE Alu 0 147 1 9 1506 515 217 167 12 chr6 120788897 120789065 -28727972 + B3A SINE B2 1 194 -4 9 1506 636 197 7 81 chr6 120789178 120789327 -28727710 - B1_Mur3 SINE Alu -1 148 11 9 1506 239 328 15 0 chr6 120789273 120789340 -28727697 - B4A SINE B4 -143 149 82 9 1506 241 308 112 28 chr6 120789390 120789497 -28727540 - RSINE1 SINE B4 -40 125 10 9 1506 755 206 50 11 chr6 120789679 120789861 -28727176 - B3 SINE B2 -27 189 1 9 1506 369 264 19 9 chr6 120789873 120789980 -28727057 - PB1D10 SINE Alu -9 108 1 9 1506 578 164 30 76 chr6 120790216 120790348 -28726689 - B1F SINE Alu 0 149 24 9 1506 298 277 204 0 chr6 120790368 120790505 -28726532 - L1MB8 LINE L1 0 6178 6014 9 1506 862 52 0 0 chr6 120790602 120790718 -28726319 + B1_Mus1 SINE Alu 1 116 -32 9 1506 250 226 0 19 chr6 120790780 120790834 -28726203 + CT-rich Low_complexity Low_complexity 3 55 0 9 1506 824 141 52 0 chr6 120790854 120790989 -28726048 - B1_Mur4 SINE Alu -8 142 1 9 1506 1213 22 0 0 chr6 120791121 120791258 -28725779 + B1_Mus1 SINE Alu 1 137 -11 9 1506 1728 21 0 0 chr6 120791258 120791449 -28725588 + B2_Mm1t SINE B2 2 193 0 9 1506 384 289 70 35 chr6 120791501 120791673 -28725364 - B3A SINE B2 -17 181 4 9 1506 343 172 109 20 chr6 120791710 120791811 -28725226 - L1M4 LINE L1 -439 5739 5630 9 1506 238 295 0 16 chr6 120792390 120792452 -28724585 + B4 SINE B4 80 140 -152 9 1506 295 245 102 68 chr6 120792400 120792518 -28724519 + B1_Mm SINE Alu 5 126 -21 9 1506 211 263 88 0 chr6 120792544 120792601 -28724436 + ID4 SINE ID 15 76 -7 9 1506 497 230 110 8 chr6 120792640 120792767 -28724270 - B1_Mur1 SINE Alu 0 149 10 9 1506 549 219 133 6 chr6 120793167 120793332 -28723705 + B3 SINE B2 1 186 -30 9 1506 482 228 159 6 chr6 120793346 120793509 -28723528 - B3A SINE B2 -6 192 5 9 1506 23 33 0 0 chr6 120793513 120793543 -28723494 + AT_rich Low_complexity Low_complexity 1 30 0 9 1506 432 280 35 14 chr6 120793547 120793692 -28723345 + B1_Mur1 SINE Alu 1 148 -1 9 1506 593 247 66 12 chr6 120793783 120793982 -28723055 - B3A SINE B2 -13 203 2 9 1506 724 216 72 172 chr6 120794078 120794397 -28722640 - B4A SINE B4 -2 290 4 9 1506 304 237 39 13 chr6 120794426 120794503 -28722534 + ID2 SINE ID 5 83 0 9 1506 228 176 39 0 chr6 120794608 120794659 -28722378 - MER31A LTR ERV1 -9 476 424 9 1506 551 186 152 0 chr6 120794733 120794851 -28722186 + B1_Mur1 SINE Alu 3 138 -11 9 1506 28 48 0 0 chr6 120794900 120794942 -28722095 + AT_rich Low_complexity Low_complexity 1 42 0 9 1506 509 202 76 0 chr6 120794975 120795094 -28721943 - B3A SINE B2 -70 128 1 9 1506 311 60 0 20 chr6 120795106 120795157 -28721880 + (TTTTTG)n Simple_repeat Simple_repeat 4 53 0 9 1506 887 89 137 0 chr6 120795164 120795288 -28721749 - B1_Mm SINE Alu -6 141 1 9 1506 353 240 39 59 chr6 120795288 120795382 -28721655 - MER31A LTR ERV1 -392 93 1 9 1506 304 214 0 0 chr6 120796057 120796113 -28720924 + ID4 SINE ID 19 74 -9 9 1506 528 16 0 0 chr6 120796177 120796238 -28720799 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 9 1506 498 33 0 0 chr6 120796232 120796292 -28720745 + (TC)n Simple_repeat Simple_repeat 2 61 0 9 1506 1189 55 0 7 chr6 120796292 120796438 -28720599 - B1_Mm SINE Alu 0 147 3 9 1506 1491 58 16 10 chr6 120796677 120796869 -28720168 - B2_Mm2 SINE B2 0 195 3 9 1506 788 207 126 6 chr6 120796870 120797045 -28719992 + B3 SINE B2 14 209 -7 9 1506 495 148 235 0 chr6 120797197 120797312 -28719725 + B1_Mur4 SINE Alu 9 150 0 9 1506 235 242 0 16 chr6 120797656 120797719 -28719318 - RSINE1 SINE B4 -2 163 102 9 1506 23 54 0 0 chr6 120797746 120797783 -28719254 + AT_rich Low_complexity Low_complexity 1 37 0 9 1506 448 233 216 8 chr6 120797789 120797923 -28719114 - B3A SINE B2 -36 162 1 9 1506 392 278 28 0 chr6 120797928 120798036 -28719001 + MER44B DNA MER2_type 104 214 -336 9 1506 264 219 0 15 chr6 120798152 120798217 -28718820 + RSINE1 SINE B4 6 69 -96 9 1506 204 119 23 45 chr6 120798799 120798843 -28718194 + T-rich Low_complexity Low_complexity 3 45 0 9 1506 514 308 6 31 chr6 120798857 120799018 -28718019 - RSINE1 SINE B4 -1 164 8 9 1506 543 219 48 8 chr6 120799022 120799146 -28717891 - B1F2 SINE Alu -5 144 16 9 1506 330 87 0 0 chr6 120799152 120799198 -28717839 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 9 1506 585 244 0 31 chr6 120799208 120799331 -28717706 - B3 SINE B2 -11 205 87 9 1506 11096 84 43 42 chr6 120799331 120799832 -28717205 - RLTR22_Mur LTR ERVK -1 1847 1315 9 1506 186 118 0 0 chr6 120799832 120799866 -28717171 + (CATA)n Simple_repeat Simple_repeat 3 36 0 9 1506 11096 84 43 42 chr6 120799866 120800021 -28717016 - RLTR22_Mur LTR ERVK -534 1314 1165 9 1506 1404 89 21 0 chr6 120800021 120800212 -28716825 - B2_Mm2 SINE B2 0 195 1 9 1506 1165 75 0 0 chr6 120800218 120800365 -28716672 - B1_Mus1 SINE Alu 0 148 2 9 1506 11096 84 43 42 chr6 120800365 120801544 -28715493 - RLTR22_Mur LTR ERVK -684 1164 2 9 1506 533 179 42 0 chr6 120801544 120801635 -28715402 - B3A SINE B2 -103 95 1 9 1506 1745 142 75 59 chr6 120801686 120802044 -28714993 - ORR1B2 LTR MaLR 0 367 4 9 1506 227 250 0 0 chr6 120802047 120802099 -28714938 - RSINE1 SINE B4 -5 160 109 9 1506 404 288 35 14 chr6 120802194 120802335 -28714702 - B1_Mur1 SINE Alu -5 144 1 1 1506 564 260 8 8 chr6 120802395 120802523 -28714514 + ID_B1 SINE B4 95 222 -2 1 1506 237 108 0 0 chr6 120802793 120802830 -28714207 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1506 275 177 16 0 chr6 120802835 120802897 -28714140 + GA-rich Low_complexity Low_complexity 3 65 0 1 1506 221 263 53 0 chr6 120802903 120802960 -28714077 - RSINE1 SINE B4 -52 113 54 9 1506 183 42 0 0 chr6 120803097 120803121 -28713916 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1506 616 243 27 27 chr6 120803127 120803275 -28713762 - B1_Mur1 SINE Alu 0 149 2 1 1506 244 230 76 45 chr6 120803496 120803628 -28713409 - L1MC LINE L1 -3190 2956 2821 1 1506 887 58 0 0 chr6 120803629 120803750 -28713287 - B1_Mm SINE Alu 0 147 27 1 1506 287 180 33 0 chr6 120803781 120803842 -28713195 - L1MC LINE L1 -3313 2833 2771 1 1506 1490 65 16 0 chr6 120803870 120804055 -28712982 - B2_Mm2 SINE B2 -7 188 1 1 1506 1393 75 11 11 chr6 120804179 120804367 -28712670 - B2_Mm2 SINE B2 -7 188 1 1 1506 536 277 167 16 chr6 120804368 120804746 -28712291 - Cheshire DNA MER1_type -1821 599 165 1 1506 596 138 9 27 chr6 120805010 120805122 -28711915 + B3 SINE B2 1 110 -106 1 1506 1122 188 9 33 chr6 120805191 120805406 -28711631 + B3 SINE B2 3 212 -4 1 1506 371 276 99 94 chr6 120805495 120805707 -28711330 + B3A SINE B2 3 215 -1 1 1506 386 132 0 14 chr6 120805737 120805806 -28711231 - B1_Mus2 SINE Alu -2 145 78 1 1506 849 170 57 48 chr6 120805802 120806031 -28711006 + RMER6C LTR ERVK 371 601 -89 1 1506 377 275 0 0 chr6 120806765 120806845 -28710192 - ID4_ SINE ID 0 83 4 1 1506 701 178 122 6 chr6 120807043 120807207 -28709830 - L1MB3 LINE L1 -346 5837 5655 1 1506 446 296 34 85 chr6 120807207 120807443 -28709594 - ID_B1 SINE B4 0 224 1 1 1506 23 0 0 0 chr6 120807498 120807521 -28709516 + AT_rich Low_complexity Low_complexity 1 23 0 1 1506 379 214 91 28 chr6 120807525 120807636 -28709401 - B1F SINE Alu -7 142 7 1 1506 218 167 37 0 chr6 120807658 120807712 -28709325 + A-rich Low_complexity Low_complexity 3 58 0 1 1506 480 243 9 9 chr6 120807718 120807826 -28709211 - PB1D9 SINE Alu -12 108 1 1 1506 455 256 111 0 chr6 120807860 120807977 -28709060 - B1_Mus1 SINE Alu -8 141 12 1 1506 384 260 10 10 chr6 120808010 120808107 -28708930 - B3 SINE B2 0 216 120 1 1506 576 0 0 0 chr6 120808829 120808893 -28708144 + (TCCC)n Simple_repeat Simple_repeat 2 65 0 1 1506 410 208 0 0 chr6 120808901 120808973 -28708064 - B1F SINE Alu -69 80 9 1 1506 537 222 275 0 chr6 120809707 120809878 -28707159 + ID_B1 SINE B4 3 220 -4 1 1506 721 207 206 6 chr6 120810048 120810228 -28706809 - B3 SINE B2 0 216 1 1 1506 329 311 29 0 chr6 120810299 120810402 -28706635 + PB1D10 SINE Alu 1 106 -11 1 1506 669 270 117 29 chr6 120810439 120810679 -28706358 + B4 SINE B4 9 269 -23 1 1506 1441 198 15 57 chr6 120810680 120811012 -28706025 + RMER1C Other Other 736 1053 -289 1 1506 758 206 18 24 chr6 120811013 120811134 -28705903 + B2_Mm2 SINE B2 2 124 -71 1 1506 242 95 0 23 chr6 120811134 120811177 -28705860 + (CATA)n Simple_repeat Simple_repeat 1 42 0 1 1506 758 206 18 24 chr6 120811177 120811224 -28705813 + B2_Mm2 SINE B2 125 169 -26 1 1506 1528 182 31 3 chr6 120811254 120811540 -28705497 + RMER1C Other Other 1040 1333 -9 1 1506 681 192 156 0 chr6 120811540 120811707 -28705330 + B3 SINE B2 23 215 -1 1 1506 535 237 78 43 chr6 120812082 120812223 -28704814 - B1F2 SINE Alu -2 147 2 1 1506 432 208 0 19 chr6 120812704 120812807 -28704230 - PB1 SINE Alu -5 122 22 1 1506 669 147 30 133 chr6 120813066 120813082 -28703955 - B1_Mur3 SINE Alu 0 149 139 1 1506 225 0 0 0 chr6 120813082 120813107 -28703930 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1506 669 147 30 133 chr6 120813107 120813255 -28703782 - B1_Mur3 SINE Alu -11 138 2 1 1506 261 0 0 0 chr6 120813272 120813301 -28703736 + (TCC)n Simple_repeat Simple_repeat 1 29 0 1 1506 260 203 51 0 chr6 120813324 120813383 -28703654 - Lx8 LINE L1 -773 6700 6639 1 1506 1302 96 23 0 chr6 120813414 120813591 -28703446 - B2_Mm2 SINE B2 -14 181 1 1 1506 938 140 0 45 chr6 120813644 120813801 -28703236 + B1_Mur4 SINE Alu 1 150 0 1 1506 471 231 27 20 chr6 120813845 120813991 -28703046 - Lx9 LINE L1 -8 7636 7490 1 1506 258 297 126 0 chr6 120814069 120814180 -28702857 + B1F1 SINE Alu 5 129 -20 1 1506 400 93 27 0 chr6 120814196 120814271 -28702766 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 1 1506 311 248 97 19 chr6 120814276 120814379 -28702658 + B4A SINE B4 82 192 -100 1 1506 575 168 56 9 chr6 120814287 120814395 -28702642 + PB1D7 SINE Alu 8 120 0 1 1506 1341 81 26 26 chr6 120814427 120814618 -28702419 - B2_Mm2 SINE B2 -3 192 2 1 1506 1164 55 0 0 chr6 120814776 120814921 -28702116 - B1_Mus2 SINE Alu -2 145 1 1 1506 665 181 119 8 chr6 120815061 120815195 -28701842 - B1_Mur3 SINE Alu 0 149 1 1 1506 369 0 0 0 chr6 120815207 120815248 -28701789 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 1 1506 300 212 42 88 chr6 120815248 120815358 -28701679 - B1F SINE Alu -12 137 3 1 1506 694 130 293 19 chr6 120815383 120815540 -28701497 - B3 SINE B2 -15 201 2 1 1506 22 0 0 0 chr6 120816485 120816507 -28700530 + AT_rich Low_complexity Low_complexity 1 22 0 1 1506 237 241 164 62 chr6 120816768 120816781 -28700256 - B2_Mm2 SINE B2 0 195 184 1 1506 344 206 218 40 chr6 120816781 120816882 -28700155 - PB1D9 SINE Alu 0 120 2 1 1506 358 236 196 52 chr6 120816882 120817045 -28699992 - B3A SINE B2 -12 183 1 1 1506 554 189 9 28 chr6 120817146 120817255 -28699782 - PB1D9 SINE Alu -9 111 5 1 1506 185 65 0 31 chr6 120817689 120817721 -28699316 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1506 1199 61 0 7 chr6 120817731 120817879 -28699158 - B1_Mus1 SINE Alu 0 148 2 1 1506 251 224 9 45 chr6 120818353 120818420 -28698617 - Charlie5 DNA MER1_type -124 2500 2434 1 1506 3362 73 59 25 chr6 120818420 120818910 -28698127 - L1_Mus3 LINE L1 -1 6637 6131 1 1506 251 224 9 45 chr6 120818910 120818954 -28698083 - Charlie5 DNA MER1_type -191 2433 2393 1 1506 452 240 40 8 chr6 120819391 120819517 -28697520 - B1_Mur4 SINE Alu 0 150 21 1 1506 392 268 156 8 chr6 120819771 120819899 -28697138 - B1F1 SINE Alu -1 148 2 1 1506 691 186 0 0 chr6 120820044 120820162 -28696875 - B1_Mus2 SINE Alu 0 147 30 1 1506 293 278 50 30 chr6 120820090 120820190 -28696847 - MT2B LTR ERVL -345 256 155 1 1506 1060 57 42 14 chr6 120820346 120820489 -28696548 + B1_Mus1 SINE Alu 1 147 -1 1 1506 201 154 0 0 chr6 120820494 120820533 -28696504 + A-rich Low_complexity Low_complexity 4 42 0 1 1506 1423 254 159 5 chr6 120821591 120822030 -28695007 - MTE-int LTR MaLR -454 1126 620 1 1506 5130 37 30 2 chr6 120822250 120822872 -28694165 - L1Md_F2 LINE L1 0 6582 5943 1 1506 500 314 102 10 chr6 120823094 120823290 -28693747 - ID_B1 SINE B4 0 224 11 1 1506 414 250 161 0 chr6 120823390 120823514 -28693523 + ID_B1 SINE B4 81 224 0 1 1506 257 337 35 0 chr6 120823625 120823711 -28693326 + ID_B1 SINE B4 82 170 -54 1 1506 255 294 71 27 chr6 120823711 120823737 -28693300 + PB1D10 SINE Alu 1 117 0 1 1506 562 231 38 15 chr6 120823737 120823869 -28693168 + RSINE1 SINE B4 1 135 -30 1 1506 1162 35 14 0 chr6 120825138 120825283 -28691754 - B1_Mus2 SINE Alu 0 147 1 1 1506 279 302 9 28 chr6 120825395 120825504 -28691533 + PB1D7 SINE Alu 1 107 -13 1 1506 657 197 8 0 chr6 120825588 120825720 -28691317 + B1_Mur4 SINE Alu 12 144 -6 1 1506 195 129 0 0 chr6 120825820 120825851 -28691186 + (TATG)n Simple_repeat Simple_repeat 1 31 0 1 1506 380 213 42 7 chr6 120826736 120826846 -28690191 - B2_Mm2 SINE B2 -81 117 4 1 1506 578 146 100 0 chr6 120827122 120827232 -28689805 + B1_Mus2 SINE Alu 24 144 -3 1 1506 442 261 49 25 chr6 120827265 120827387 -28689650 + B4 SINE B4 9 133 -159 1 1506 295 78 19 19 chr6 120827577 120827629 -28689408 + (CCCCCT)n Simple_repeat Simple_repeat 2 53 0 1 1506 254 125 21 0 chr6 120827697 120827745 -28689292 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1506 442 267 0 17 chr6 120827827 120827945 -28689092 + ID_B1 SINE B4 102 217 -7 1 1506 791 242 149 39 chr6 120828018 120828327 -28688710 - Lx8 LINE L1 -6 7467 7125 1 1506 500 194 111 7 chr6 120828433 120828568 -28688469 + B1F SINE Alu 1 149 0 1 1506 694 247 21 47 chr6 120829722 120829913 -28687124 - ID_B1 SINE B4 -20 204 19 1 1506 571 243 95 7 chr6 120830197 120830334 -28686703 - B1F SINE Alu 0 149 1 1 1506 201 154 0 0 chr6 120830754 120830793 -28686244 + CT-rich Low_complexity Low_complexity 2 40 0 1 1506 784 173 7 28 chr6 120830797 120830940 -28686097 - B1_Mur4 SINE Alu -1 149 10 1 1506 214 250 0 29 chr6 120830951 120831004 -28686033 + T-rich Low_complexity Low_complexity 16 68 0 1 1506 1097 71 43 0 chr6 120831004 120831145 -28685892 - B1_Mus2 SINE Alu 0 147 1 1 1506 214 250 0 29 chr6 120831145 120831161 -28685876 + T-rich Low_complexity Low_complexity 1 15 0 1 1506 549 160 93 64 chr6 120831245 120831385 -28685652 - B1_Mus1 SINE Alu 0 148 5 1 1506 268 338 0 0 chr6 120831561 120831629 -28685408 + ID4_ SINE ID 9 76 -7 1 1506 228 345 11 11 chr6 120831629 120831649 -28685388 + ID_B1 SINE B4 9 96 -128 1 1506 270 276 169 8 chr6 120832216 120832340 -28684697 - B1F1 SINE Alu -2 147 4 1 1506 363 300 38 23 chr6 120832422 120832555 -28684482 + RSINE1 SINE B4 2 136 -29 1 1506 2967 127 12 10 chr6 120832703 120833189 -28683848 - RLTR1C LTR ERV1 -16 487 1 1 1506 596 174 35 9 chr6 120833191 120833307 -28683730 + B1_Mur1 SINE Alu 10 128 -21 1 1506 441 268 85 23 chr6 120833357 120833487 -28683550 + B1_Mur1 SINE Alu 11 148 -1 1 1506 713 127 135 0 chr6 120833506 120833632 -28683405 + B1_Mur4 SINE Alu 1 143 -7 1 1506 297 260 0 0 chr6 120833690 120833758 -28683279 + PB1D10 SINE Alu 1 68 -49 1 1506 328 326 68 75 chr6 120833758 120833904 -28683133 + RSINE1 SINE B4 1 145 -20 1 1506 393 39 0 0 chr6 120834006 120834058 -28682979 + B1_Mus1 SINE Alu 10 61 -87 1 1506 504 0 0 0 chr6 120834077 120834133 -28682904 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1506 887 164 93 0 chr6 120834169 120834352 -28682685 - B3 SINE B2 -7 209 10 1 1506 242 290 16 0 chr6 120834361 120834423 -28682614 + ID_B1 SINE B4 162 224 0 1 1506 348 199 59 122 chr6 120834949 120835116 -28681921 - B3 SINE B2 -9 186 2 1 1506 803 217 14 77 chr6 120835141 120835361 -28681676 - B3 SINE B2 -10 206 1 1 1506 713 144 8 8 chr6 120835739 120835865 -28681172 - B1_Mur4 SINE Alu 0 150 25 1 1506 21 0 0 0 chr6 120835881 120835902 -28681135 + AT_rich Low_complexity Low_complexity 1 21 0 1 1506 274 202 0 5 chr6 120836319 120836387 -28680650 + B1F1 SINE Alu 1 66 -51 1 1506 737 216 57 6 chr6 120837647 120837824 -28679213 - MER20 DNA MER1_type -32 187 2 1 1506 386 286 126 8 chr6 120838129 120838256 -28678781 + B1F SINE Alu 3 144 -5 1 1506 288 237 171 0 chr6 120839693 120839769 -28677268 - PB1D10 SINE Alu -26 91 3 1 1506 1366 168 0 0 chr6 120840212 120840438 -28676599 + URR1A DNA MER1_type 1 226 0 1 1506 449 273 143 27 chr6 120841967 120842114 -28674923 - RSINE1 SINE B4 0 165 2 1 1506 566 239 194 0 chr6 120842414 120842594 -28674443 + ID_B1 SINE B4 10 224 0 1 1506 213 214 191 67 chr6 120844435 120844540 -28672497 + PB1D7 SINE Alu 3 120 0 1 1506 229 163 0 44 chr6 120844911 120844956 -28672081 + RSINE1 SINE B4 34 76 -89 1 1506 639 223 82 10 chr6 120845055 120845250 -28671787 + B3 SINE B2 1 209 -7 1 1506 296 301 93 52 chr6 120845255 120845427 -28671610 + B4 SINE B4 113 291 -1 1 1506 474 215 33 80 chr6 120846217 120846399 -28670638 + B3A SINE B2 27 187 -8 1 1506 988 58 0 21 chr6 120846406 120846546 -28670491 + B1_Mm SINE Alu 11 147 0 1 1506 434 216 82 10 chr6 120848196 120848294 -28668743 + B1_Mur1 SINE Alu 44 148 -1 1 1507 293 231 187 0 chr6 120848415 120848506 -28668531 + RSINE1 SINE B4 53 160 -5 1 1507 234 0 0 0 chr6 120848507 120848533 -28668504 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 1 1507 282 288 62 9 chr6 120848792 120848904 -28668133 + MIRc SINE MIR 44 161 -107 1 1507 1479 115 91 11 chr6 120849198 120849462 -28667575 + ORR1A4 LTR MaLR 3 287 -42 1 1507 374 74 0 0 chr6 120849462 120849516 -28667521 + B1_Mus2 SINE Alu 2 55 -92 1 1507 28 0 0 0 chr6 120849613 120849641 -28667396 + AT_rich Low_complexity Low_complexity 1 28 0 1 1507 813 37 0 0 chr6 120849646 120849754 -28667283 + B1_Mus1 SINE Alu 32 139 -9 1 1507 342 133 21 22 chr6 120849752 120849826 -28667211 + ORR1A4 LTR MaLR 340 421 0 1 1507 1139 27 0 46 chr6 120850947 120851100 -28665937 + B1_Mm SINE Alu 2 147 0 1 1507 1034 88 0 0 chr6 120852501 120852637 -28664400 + B1_Mus2 SINE Alu 2 137 -10 1 1507 728 181 7 14 chr6 120852946 120853086 -28663951 + B1_Mm SINE Alu 1 139 -8 1 1507 395 210 0 12 chr6 120853192 120853274 -28663763 + L1M2 LINE L1 5529 5609 -682 1 1507 226 188 91 30 chr6 120854080 120854146 -28662891 - LTR37A LTR ERV1 -53 373 304 1 1507 481 266 189 11 chr6 120854150 120854340 -28662697 + ID_B1 SINE B4 1 224 0 1 1507 241 254 14 0 chr6 120854565 120854636 -28662401 + ID4 SINE ID 12 83 0 1 1507 790 46 0 9 chr6 120854700 120854809 -28662228 + B1_Mm SINE Alu 1 108 -39 1 1507 465 19 0 0 chr6 120854856 120854910 -28662127 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1507 314 267 27 0 chr6 120854914 120854989 -28662048 + B3 SINE B2 1 77 -139 1 1507 299 211 39 26 chr6 120855092 120855170 -28661867 + ID4_ SINE ID 2 80 -3 1 1507 180 0 0 0 chr6 120855188 120855208 -28661829 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1507 231 36 0 0 chr6 120855553 120855581 -28661456 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1507 273 263 16 16 chr6 120855784 120855875 -28661162 + ID_B1 SINE B4 66 152 -72 1 1507 318 186 92 8 chr6 120855813 120855907 -28661130 + PB1 SINE Alu 10 117 0 1 1507 1569 183 67 34 chr6 120855984 120856341 -28660696 - MTD LTR MaLR 0 419 51 1 1507 456 51 0 0 chr6 120856341 120856400 -28660637 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1507 214 300 17 0 chr6 120856792 120856852 -28660185 - MER5B DNA MER1_type 0 178 118 1 1507 264 263 130 56 chr6 120857211 120857372 -28659665 + L1M4 LINE L1 4575 4747 -1399 1 1507 799 191 136 5 chr6 120857585 120857769 -28659268 + B3 SINE B2 3 210 -6 1 1507 3109 64 2 0 chr6 120857943 120858363 -28658674 + BGLII LTR ERVK 1 421 0 1 1507 1107 131 80 15 chr6 120859607 120859808 -28657229 - B3 SINE B2 0 216 3 1 1507 506 170 53 0 chr6 120859821 120859915 -28657122 - B1_Mur2 SINE Alu -5 144 46 1 1507 1046 94 147 0 chr6 120859927 120859947 -28657090 - B2_Mm2 SINE B2 0 195 176 1 1507 180 0 0 0 chr6 120859947 120859967 -28657070 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1507 1046 94 147 0 chr6 120859967 120860116 -28656921 - B2_Mm2 SINE B2 -20 175 2 1 1507 475 267 78 19 chr6 120860139 120860180 -28656857 + L1M4 LINE L1 4982 5029 -1117 1 1507 912 178 68 24 chr6 120860180 120860387 -28656650 + B3 SINE B2 1 216 0 1 1507 475 267 78 19 chr6 120860387 120860551 -28656486 + L1M4 LINE L1 5030 5198 -948 1 1507 361 261 1 98 chr6 120860554 120860667 -28656370 + PB1D7 SINE Alu 1 96 -54 1 1507 307 289 59 40 chr6 120860737 120860838 -28656199 + RSINE1 SINE B4 43 145 -20 1 1507 952 199 0 22 chr6 120860881 120861066 -28655971 + B3 SINE B2 2 182 -34 1 1507 372 312 9 0 chr6 120861092 120861204 -28655833 - ID_B1 SINE B4 -31 193 81 1 1507 379 252 0 67 chr6 120861235 120861354 -28655683 - PB1D10 SINE Alu -1 116 6 1 1507 272 300 57 86 chr6 120862607 120862637 -28654400 - YREP_Mm Unknown Unknown -1492 320 224 1 1507 531 246 0 24 chr6 120862637 120862762 -28654275 + ID_B1 SINE B4 102 223 -1 1 1507 272 300 57 86 chr6 120862762 120862782 -28654255 - YREP_Mm Unknown Unknown -1492 223 151 1 1507 554 39 0 25 chr6 120862787 120862867 -28654170 + B1_Mm SINE Alu 70 147 0 1 1507 188 35 35 0 chr6 120862867 120862896 -28654141 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1507 714 298 69 12 chr6 120863285 120863530 -28653507 + B4A SINE B4 2 260 -32 1 1507 276 30 0 0 chr6 120863551 120863584 -28653453 + (GGGAGA)n Simple_repeat Simple_repeat 1 33 0 1 1507 223 305 100 17 chr6 120864225 120864345 -28652692 + MIR SINE MIR 77 206 -56 1 1507 213 227 23 0 chr6 120864346 120864390 -28652647 + B1F1 SINE Alu 14 58 -91 1 1507 432 184 82 9 chr6 120864410 120864520 -28652517 - PB1D9 SINE Alu -1 119 2 1 1507 189 154 0 0 chr6 120866024 120866063 -28650974 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 1 1507 243 0 0 0 chr6 120867493 120867520 -28649517 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1507 180 77 0 0 chr6 120867531 120867557 -28649480 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1507 515 306 58 112 chr6 120867561 120867837 -28649200 - B4A SINE B4 -23 269 9 1 1507 884 39 122 15 chr6 120867922 120868053 -28648984 + B1_Mm SINE Alu 1 145 -2 1 1507 214 167 0 0 chr6 120868053 120868095 -28648942 + C-rich Low_complexity Low_complexity 1 42 0 1 1507 890 201 33 22 chr6 120868156 120868339 -28648698 + B3 SINE B2 2 186 -30 1 1507 279 0 0 0 chr6 120868339 120868370 -28648667 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1507 819 131 58 0 chr6 120868455 120868592 -28648445 - B1_Mur1 SINE Alu 0 149 5 1 1507 838 155 64 13 chr6 120868706 120868863 -28648174 - B2_Mm2 SINE B2 -19 176 12 1 1507 3960 131 117 9 chr6 120869291 120869956 -28647081 - RMER19A LTR ERVK 0 737 1 1 1507 228 242 28 70 chr6 120870083 120870154 -28646883 - PB1D10 SINE Alu -10 107 40 1 1507 2310 207 12 67 chr6 120870287 120870852 -28646185 - RLTR20C LTR ERVK 0 534 1 1 1507 1628 203 81 37 chr6 120870948 120871016 -28646021 - ORR1D1 LTR MaLR -1 373 309 1 1507 695 175 7 35 chr6 120871016 120871158 -28645879 + B1_Mus1 SINE Alu 1 138 -10 1 1507 1628 203 81 37 chr6 120871158 120871427 -28645610 - ORR1D1 LTR MaLR -66 308 21 1 1507 241 108 0 0 chr6 120871427 120871464 -28645573 - ORR1C2 LTR MaLR -1 383 347 1 1507 2445 144 37 2 chr6 120871464 120871869 -28645168 - MTC LTR MaLR -2 419 1 1 1507 762 184 7 7 chr6 120871870 120872012 -28645025 + B1_Mus1 SINE Alu 2 143 -5 1 1507 1165 149 89 13 chr6 120872044 120872269 -28644768 - ORR1C2 LTR MaLR -26 358 117 1 1507 1322 195 28 11 chr6 120872272 120872557 -28644480 + RLTR11A2 LTR ERVK 238 527 0 1 1507 657 144 79 8 chr6 120872557 120872670 -28644367 - ORR1C2 LTR MaLR -262 122 1 1 1507 466 286 0 25 chr6 120872786 120872908 -28644129 - PB1D7 SINE Alu -1 119 1 1 1507 251 258 143 10 chr6 120872908 120873006 -28644031 - L1M5 LINE L1 -777 5667 5557 1 1507 400 301 42 7 chr6 120873008 120873152 -28643885 + B3A SINE B2 1 149 -49 1 1507 341 225 254 8 chr6 120873205 120873335 -28643702 - RSINE1 SINE B4 -2 163 2 1 1507 365 281 72 72 chr6 120873335 120873464 -28643573 - B4A SINE B4 -64 228 112 1 1507 461 148 182 76 chr6 120873464 120873596 -28643441 - B1_Mur1 SINE Alu 0 149 4 1 1507 365 281 72 72 chr6 120873596 120873646 -28643391 - B4A SINE B4 -181 111 51 1 1507 222 118 0 0 chr6 120873853 120873887 -28643150 + (GGA)n Simple_repeat Simple_repeat 1 34 0 1 1507 1443 54 44 5 chr6 120874283 120874487 -28642550 - MTB LTR MaLR 0 400 189 1 1507 600 14 0 0 chr6 120874487 120874556 -28642481 + (TTTC)n Simple_repeat Simple_repeat 1 69 0 1 1507 798 30 0 0 chr6 120874556 120874656 -28642381 - B1_Mus1 SINE Alu -12 136 37 1 1507 1382 95 0 41 chr6 120874637 120874857 -28642180 - MTB LTR MaLR -189 211 1 1 1507 1387 78 16 5 chr6 120874874 120875067 -28641970 + B2_Mm2 SINE B2 1 195 0 1 1507 720 164 7 76 chr6 120875234 120875379 -28641658 + B1_Mur4 SINE Alu 9 143 -7 1 1507 27 49 0 0 chr6 120875442 120875483 -28641554 + AT_rich Low_complexity Low_complexity 1 41 0 1 1507 1251 202 258 8 chr6 120875502 120875866 -28641171 + MT2A LTR ERVL 1 455 -78 1 1507 744 33 0 0 chr6 120875866 120875957 -28641080 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 1 1507 1185 35 0 0 chr6 120875961 120876104 -28640933 - B1_Mus2 SINE Alu -4 143 1 1 1507 1172 98 54 5 chr6 120876443 120876627 -28640410 - B2_Mm1a SINE B2 0 193 1 1 1507 423 301 0 9 chr6 120876628 120876742 -28640295 - B1_Mus1 SINE Alu -13 135 23 1 1507 516 32 0 0 chr6 120877439 120877501 -28639536 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 1 1507 709 234 0 0 chr6 120877505 120877646 -28639391 - B1_Mus1 SINE Alu -5 143 3 1 1507 278 258 168 21 chr6 120877650 120877665 -28639372 - ID_B1 SINE B4 0 224 116 1 1507 337 238 25 0 chr6 120877665 120877745 -28639292 - B1F SINE Alu -33 116 35 1 1507 234 163 30 30 chr6 120878294 120878395 -28638642 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 1507 24 85 0 0 chr6 120878409 120878468 -28638569 + AT_rich Low_complexity Low_complexity 1 59 0 1 1507 519 281 85 35 chr6 120878955 120879154 -28637883 - ID_B1 SINE B4 -1 223 15 1 1507 776 209 0 30 chr6 120879225 120879409 -28637628 - B3 SINE B2 0 198 20 1 1507 610 215 49 84 chr6 120879533 120879736 -28637301 + B3A SINE B2 3 198 0 1 1507 333 0 0 0 chr6 120879776 120879813 -28637224 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1507 256 319 36 29 chr6 120879988 120880127 -28636910 + MER66-int LTR ERV1 1477 1616 -5060 1 1507 213 39 0 0 chr6 120880710 120880736 -28636301 + (TGG)n Simple_repeat Simple_repeat 2 27 0 1 1507 256 263 120 10 chr6 120881177 120881277 -28635760 + RMER15 LTR ERVL 407 517 -58 1 1507 559 179 0 10 chr6 120881296 120881413 -28635624 - B1_Mur2 SINE Alu -1 119 10 1 1507 391 232 0 35 chr6 120881830 120881915 -28635122 - ID4_ SINE ID -1 82 1 1 1507 294 149 0 0 chr6 120885709 120885756 -28631281 - ID4 SINE ID -35 48 2 1 1507 340 228 25 0 chr6 120886136 120886215 -28630822 - ID4 SINE ID -1 82 2 1 1507 210 105 0 0 chr6 120887681 120887719 -28629318 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1507 210 278 0 0 chr6 120887719 120887773 -28629264 + G-rich Low_complexity Low_complexity 2 55 0 1 1507 249 159 0 0 chr6 120889502 120889546 -28627491 + GA-rich Low_complexity Low_complexity 5 48 0 1 1507 303 247 11 43 chr6 120889717 120889810 -28627227 - ID_B1 SINE B4 -123 101 12 1 1507 339 182 14 31 chr6 120889739 120889819 -28627218 - ID4 SINE ID -71 81 5 1 1507 508 225 27 0 chr6 120890232 120890343 -28626694 + ID_B1 SINE B4 111 224 0 1 1507 541 123 349 0 chr6 120890472 120890578 -28626459 - B1_Mur4 SINE Alu -6 144 2 1 1507 608 279 178 6 chr6 120891273 120891453 -28625584 - ID_B1 SINE B4 -13 211 1 1 1507 292 244 198 11 chr6 120891470 120891561 -28625476 - PB1D10 SINE Alu -8 109 2 1 1507 347 73 18 0 chr6 120892098 120892153 -28624884 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1507 1255 98 146 20 chr6 120892479 120892678 -28624359 + URR1A DNA MER1_type 3 226 0 1 1507 330 45 0 0 chr6 120894118 120894162 -28622875 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1507 835 222 40 45 chr6 120894387 120894585 -28622452 - B3A SINE B2 0 198 2 1 1507 339 25 0 0 chr6 120894590 120894630 -28622407 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1 1507 393 333 0 26 chr6 120894700 120894817 -28622220 - RSINE1 SINE B4 -49 116 3 1 1507 791 263 33 96 chr6 120894817 120895053 -28621984 - B4A SINE B4 -62 230 10 1 1507 387 262 56 0 chr6 120895081 120895188 -28621849 - PB1D7 SINE Alu -1 119 7 1 1507 773 224 0 0 chr6 120895188 120895322 -28621715 - B1_Mur1 SINE Alu -15 134 1 1 1507 499 314 30 54 chr6 120895352 120895520 -28621517 - RSINE1 SINE B4 0 165 2 1 1507 294 219 0 15 chr6 120896369 120896434 -28620603 - ID4 SINE ID -4 79 16 1 1507 180 337 96 87 chr6 120898079 120898183 -28618854 + L3b LINE CR1 367 471 -11 1 1507 949 189 131 0 chr6 120898601 120898792 -28618245 - B3 SINE B2 0 216 1 1 1507 819 254 0 37 chr6 120899156 120899344 -28617693 - B3A SINE B2 -14 184 4 1 1507 194 30 91 0 chr6 120900534 120900567 -28616470 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1 1507 938 24 186 0 chr6 120900571 120900695 -28616342 - B1_Mus2 SINE Alu 0 147 1 1 1507 180 152 0 0 chr6 120901011 120901044 -28615993 + GA-rich Low_complexity Low_complexity 1 33 0 1 1507 1136 138 34 187 chr6 120901726 120901993 -28615044 - URR1A DNA MER1_type 0 226 1 1 1507 702 279 106 53 chr6 120904895 120905101 -28611936 + B4 SINE B4 2 195 -97 1 1507 453 19 0 0 chr6 120905101 120905155 -28611882 + (CATA)n Simple_repeat Simple_repeat 1 54 0 1 1507 702 279 106 53 chr6 120905155 120905213 -28611824 + B4 SINE B4 196 279 -13 1 1507 566 198 119 22 chr6 120906020 120906154 -28610883 - B1F SINE Alu 0 149 3 1 1507 230 208 20 20 chr6 120907171 120907220 -28609817 + Lx8 LINE L1 7241 7289 -184 1 1507 189 0 0 0 chr6 120909193 120909214 -28607823 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 1 1507 255 221 58 0 chr6 120911981 120912085 -28604952 + (TG)n Simple_repeat Simple_repeat 1 110 0 1 1507 287 183 45 8 chr6 120912114 120912246 -28604791 + (TG)n Simple_repeat Simple_repeat 2 138 0 1 1507 561 232 240 37 chr6 120912284 120912526 -28604511 - B4A SINE B4 0 292 2 1 1507 810 159 27 20 chr6 120913432 120913580 -28603457 + B1_Mur4 SINE Alu 2 150 0 1 1507 236 244 115 54 chr6 120913889 120914019 -28603018 + L1ME3B LINE L1 6045 6182 -58 1 1507 678 58 0 0 chr6 120914070 120914157 -28602880 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 1 1507 728 138 98 15 chr6 120914157 120914289 -28602748 - B1F2 SINE Alu -4 145 3 1 1507 209 108 0 26 chr6 120915281 120915319 -28601718 + (GGGTG)n Simple_repeat Simple_repeat 5 41 0 1 1507 3586 18 2 0 chr6 120916268 120916663 -28600374 + MTA_Mm LTR MaLR 1 396 0 1 1507 9216 40 4 1 chr6 120916663 120917758 -28599279 + MTA_Mm-int LTR MaLR 1 1098 0 1 1507 3586 18 2 0 chr6 120917758 120918153 -28598884 + MTA_Mm LTR MaLR 1 396 0 1 1507 231 197 108 14 chr6 120918556 120918655 -28598382 + PB1D10 SINE Alu 5 120 0 1 1507 669 36 0 0 chr6 120918688 120918772 -28598265 + (GAA)n Simple_repeat Simple_repeat 2 85 0 1 1507 948 191 0 0 chr6 120918772 120918919 -28598118 + B1_Mur1 SINE Alu 2 148 -1 1 1507 318 224 0 0 chr6 120919675 120919760 -28597277 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 1507 489 132 41 29 chr6 120921062 120921234 -28595803 + (TG)n Simple_repeat Simple_repeat 2 175 0 1 1507 559 123 42 24 chr6 120921255 120921422 -28595615 + (TG)n Simple_repeat Simple_repeat 1 170 0 1 1507 351 0 0 0 chr6 120923084 120923123 -28593914 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1507 323 155 0 0 chr6 120923123 120923181 -28593856 + Lx4A LINE L1 7001 7058 0 1 1507 23 0 0 0 chr6 120923181 120923204 -28593833 + AT_rich Low_complexity Low_complexity 1 23 0 1 1507 279 191 0 0 chr6 120923431 120923499 -28593538 + CT-rich Low_complexity Low_complexity 2 69 0 1 1507 2929 65 50 23 chr6 120923862 120923984 -28593053 + L1_Mus1 LINE L1 6160 6281 -286 1 1507 3604 23 0 0 chr6 120923984 120924380 -28592657 + MTA_Mm LTR MaLR 1 396 0 1 1507 9907 17 0 0 chr6 120924380 120925478 -28591559 + MTA_Mm-int LTR MaLR 1 1098 0 1 1507 3562 23 2 0 chr6 120925478 120925873 -28591164 + MTA_Mm LTR MaLR 1 396 0 1 1507 2929 65 50 23 chr6 120925873 120926144 -28590893 + L1_Mus1 LINE L1 6282 6564 -3 1 1507 183 42 0 0 chr6 120926513 120926537 -28590500 + (C)n Simple_repeat Simple_repeat 1 24 0 1 1507 307 253 161 0 chr6 120926537 120926617 -28590420 - PB1D10 SINE Alu -10 107 14 1 1507 523 200 122 8 chr6 120926841 120926972 -28590065 + B1_Mur1 SINE Alu 2 147 -2 1 1507 245 39 19 0 chr6 120927458 120927510 -28589527 - B2_Mm1t SINE B2 0 193 141 1 1507 241 233 33 0 chr6 120927677 120927737 -28589300 - ID4_ SINE ID -21 62 1 1 1507 360 295 0 28 chr6 120927969 120928077 -28588960 + ID_B1 SINE B4 120 224 0 1 1507 366 177 16 0 chr6 120928468 120928530 -28588507 - ID_B1 SINE B4 -18 206 144 1 1507 836 223 91 10 chr6 120928997 120929196 -28587841 - B3 SINE B2 0 216 2 1 1507 1184 163 43 24 chr6 120929208 120929416 -28587621 - B3 SINE B2 -4 212 1 1 1507 351 78 0 0 chr6 120929572 120929623 -28587414 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1507 339 281 141 0 chr6 120930202 120930323 -28586714 - MIR SINE MIR -123 139 2 1 1507 207 125 0 0 chr6 120930391 120930431 -28586606 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 1 1507 929 157 0 0 chr6 120930776 120930910 -28586127 - B1_Mus1 SINE Alu -12 136 3 1 1507 306 329 140 0 chr6 120932310 120932453 -28584584 - MIRb SINE MIR -77 191 29 1 1507 380 265 17 25 chr6 120934638 120934758 -28582279 + RSINE1 SINE B4 47 165 0 1 1507 708 186 205 11 chr6 120935044 120935229 -28581808 - ID_B1 SINE B4 -1 223 3 1 1507 231 312 85 11 chr6 120936557 120936651 -28580386 + ID_B1 SINE B4 76 176 -48 1 1507 439 194 81 10 chr6 120936574 120936673 -28580364 + PB1D10 SINE Alu 12 117 0 1 1507 466 176 69 0 chr6 120936696 120936798 -28580239 + PB1D9 SINE Alu 1 109 -11 1 1507 389 187 53 0 chr6 120936901 120936976 -28580061 + ID_B1 SINE B4 139 217 -7 1 1507 317 240 115 6 chr6 120937480 120937570 -28579467 + PB1 SINE Alu 33 123 -4 1 1507 321 191 0 0 chr6 120938217 120938280 -28578757 - L1MA5 LINE L1 -20 6280 6218 1 1507 1217 68 0 0 chr6 120938745 120938892 -28578145 + B1_Mus2 SINE Alu 1 147 0 1 1507 220 320 13 13 chr6 120939582 120939594 -28577443 + B4A SINE B4 74 85 -207 1 1507 283 326 21 10 chr6 120939594 120939690 -28577347 + PB1 SINE Alu 1 97 -30 1 1507 212 185 0 18 chr6 120939715 120939770 -28577267 + A-rich Low_complexity Low_complexity 2 55 0 1 1507 520 136 282 0 chr6 120940881 120940984 -28576053 - B1_Mus1 SINE Alu -15 133 2 1 1507 384 255 44 62 chr6 120940991 120941104 -28575933 - PB1D10 SINE Alu -1 116 6 1 1507 628 215 58 15 chr6 120941109 120941246 -28575791 - B1_Mur2 SINE Alu -5 144 2 1 1507 1144 167 50 5 chr6 120941266 120941465 -28575572 - ID_B1 SINE B4 -16 208 1 1 1507 252 279 0 29 chr6 120942717 120942787 -28574250 + tRNA-Ala-GCY_ tRNA tRNA 2 69 -6 1 1507 220 333 9 79 chr6 120942969 120943083 -28573954 + BC1_Mm scRNA scRNA 6 111 -41 1 1507 213 217 22 0 chr6 120943587 120943633 -28573404 + MIRb SINE MIR 199 245 -23 1 1507 1091 87 0 7 chr6 120943698 120943849 -28573188 - B1_Mur4 SINE Alu 0 150 1 1 1507 558 243 49 42 chr6 120943851 120943993 -28573044 - B1F1 SINE Alu -1 148 6 1 1507 225 333 0 90 chr6 120943993 120944115 -28572922 - ID4_ SINE ID -41 111 1 1 1507 453 81 0 0 chr6 120944398 120944460 -28572577 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 1 1507 331 311 88 88 chr6 120947294 120947534 -28569503 + L1MCa LINE L1 1158 1397 -5111 1 1507 189 0 0 0 chr6 120949488 120949509 -28567528 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1 1507 686 212 36 0 chr6 120950544 120950681 -28566356 + B1_Mur2 SINE Alu 1 142 -7 1 1507 21 0 0 0 chr6 120950689 120950710 -28566327 + AT_rich Low_complexity Low_complexity 1 21 0 1 1507 1226 20 0 0 chr6 120952171 120952317 -28564720 + B1_Mm SINE Alu 2 147 0 1 1507 216 97 0 0 chr6 120952317 120952348 -28564689 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1507 321 253 108 78 chr6 120953447 120953696 -28563341 + RSINE1 SINE B4 49 274 -18 1 1507 261 266 12 37 chr6 120954196 120954278 -28562759 - B4A SINE B4 -41 251 172 1 1507 414 250 0 20 chr6 120954289 120954387 -28562650 - B4 SINE B4 -196 96 1 1 1507 213 39 0 0 chr6 120954394 120954420 -28562617 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1 1507 957 103 62 0 chr6 120954426 120954571 -28562466 - B2_Mm2 SINE B2 -41 154 1 1 1507 233 339 67 108 chr6 120954652 120954920 -28562117 - ORR1E LTR MaLR -42 317 61 1 1507 197 65 0 31 chr6 120955550 120955582 -28561455 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1 1507 1147 28 0 7 chr6 120955585 120955727 -28561310 - B1_Mm SINE Alu -5 142 2 1 1507 30 27 0 0 chr6 120955729 120955766 -28561271 + AT_rich Low_complexity Low_complexity 1 37 0 1 1507 579 208 4 0 chr6 120955766 120956003 -28561034 + (TG)n Simple_repeat Simple_repeat 1 237 0 1 1507 755 206 12 18 chr6 120956015 120956178 -28560859 - RSINE1 SINE B4 0 165 4 1 1507 296 299 74 9 chr6 120956576 120956684 -28560353 - PB1D7 SINE Alu -5 115 1 1 1507 444 242 11 0 chr6 120956596 120956687 -28560350 - ID_B1 SINE B4 -54 170 79 1 1507 428 262 202 5 chr6 120956778 120956981 -28560056 - MIR SINE MIR -14 248 6 1 1507 243 318 11 23 chr6 120957078 120957165 -28559872 - RLTR25A LTR ERVK -495 608 523 1 1507 711 176 0 0 chr6 120957087 120957212 -28559825 - B1_Mus1 SINE Alu -23 125 1 1 1507 552 235 0 0 chr6 120960648 120960746 -28556291 + B1F1 SINE Alu 1 98 -51 1 1507 1274 99 21 0 chr6 120961296 120961487 -28555550 + B2_Mm2 SINE B2 1 195 0 1 1507 279 0 0 0 chr6 120965766 120965797 -28551240 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1507 1065 37 22 0 chr6 120965797 120965931 -28551106 - B1_Mus2 SINE Alu -10 137 1 1 1507 285 98 0 0 chr6 120966623 120966664 -28550373 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1507 224 236 147 40 chr6 120969133 120969208 -28547829 - ID2 SINE ID 0 83 1 1 1507 309 288 20 3 chr6 120970852 120970964 -28546073 - PB1D10 SINE Alu 0 117 7 1 1507 193 309 70 30 chr6 120971406 120971506 -28545531 - L3 LINE CR1 -3589 900 797 1 1507 333 303 144 0 chr6 120971641 120971745 -28545292 - PB1D10 SINE Alu 0 117 6 1 1507 589 270 57 46 chr6 120971968 120972110 -28544927 + B3A SINE B2 3 155 -43 1 1507 216 0 0 0 chr6 120972110 120972134 -28544903 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1507 589 270 57 46 chr6 120972134 120972185 -28544852 + B3A SINE B2 156 198 0 1 1507 201 147 0 0 chr6 120973045 120973079 -28543958 + (TCC)n Simple_repeat Simple_repeat 3 36 0 1 1507 494 183 38 98 chr6 120973120 120973253 -28543784 - RSINE1 SINE B4 -35 130 6 1 1507 198 353 33 66 chr6 120973380 120973471 -28543566 - MIRm SINE MIR -111 165 71 1 1507 1190 254 81 24 chr6 120973537 120973920 -28543117 + MTD LTR MaLR 1 405 -14 1 1507 420 71 0 0 chr6 120974235 120974291 -28542746 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1507 244 318 34 93 chr6 120976663 120976781 -28540256 - MamSINE1 SINE tRNA -119 171 61 1 1507 280 367 95 5 chr6 120978368 120978568 -28538469 - MIRc SINE MIR -25 243 23 1 1507 465 291 40 20 chr6 120979218 120979369 -28537668 + RMER15 LTR ERVL 422 575 0 1 188 298 362 39 26 chr6 120979412 120979565 -28537472 - MER20 DNA MER1_type -45 174 20 1 1508 203 256 141 0 chr6 120980315 120980393 -28536644 - MIRc SINE MIR -66 202 114 1 1508 239 254 91 130 chr6 120980590 120980744 -28536293 + B1F SINE Alu 1 148 -1 1 1508 5160 214 82 16 chr6 120981637 120982918 -28534119 + ORR1D1-int LTR MaLR 6 1370 0 1 1508 1687 175 78 9 chr6 120982919 120983265 -28533772 + ORR1D1 LTR MaLR 5 374 0 1 1508 351 267 98 16 chr6 120985869 120985991 -28531046 + B1F SINE Alu 13 144 -5 1 1508 259 187 16 31 chr6 120986016 120986095 -28530942 + ID2 SINE ID 5 79 -4 1 1508 229 253 107 0 chr6 120986862 120986937 -28530100 - MER76 LTR ERVL -606 85 3 1 1508 628 159 126 8 chr6 120990104 120990231 -28526806 - B1_Mur3 SINE Alu -6 143 2 1 1508 554 40 0 26 chr6 120991045 120991123 -28525914 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 1 1508 267 31 0 0 chr6 120994145 120994177 -28522860 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1508 214 26 25 50 chr6 120994797 120994837 -28522200 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1508 333 169 130 110 chr6 120994840 120994940 -28522097 - B1_Mur2 SINE Alu -13 136 6 1 1508 810 158 14 7 chr6 120996103 120996243 -28520794 + B1_Mus1 SINE Alu 6 146 -2 1 1508 463 300 133 19 chr6 120996674 120996962 -28520075 + L1MB1 LINE L1 5574 5910 -402 1 1508 398 220 31 57 chr6 120997062 120997216 -28519821 + L1MB1 LINE L1 5896 6045 -246 1 1508 296 235 0 67 chr6 120997229 120997334 -28519703 - B4 SINE B4 -165 127 30 1 1508 217 319 39 124 chr6 120997336 120997465 -28519572 - PB1D9 SINE Alu -2 118 1 1 1508 284 255 108 9 chr6 120997465 120997576 -28519461 - L1M3 LINE L1 -1384 4762 4641 1 1508 331 330 44 9 chr6 120997659 120997772 -28519265 - L1MD LINE L1 -1666 4480 4364 1 1508 293 326 31 0 chr6 120997928 120998026 -28519011 - L1M3 LINE L1 -1987 4153 4053 1 1508 261 119 0 0 chr6 120999107 120999149 -28517888 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1508 522 0 0 0 chr6 120999261 120999319 -28517718 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1508 358 287 56 89 chr6 120999549 120999729 -28517308 + B3A SINE B2 19 192 -3 1 1508 578 245 145 18 chr6 121001505 121001730 -28515307 - Charlie1b DNA MER1_type -191 332 88 1 1508 208 118 58 14 chr6 121001928 121001997 -28515040 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 2 1508 195 371 9 37 chr6 121002003 121002112 -28514925 - L2a LINE L2 -17 3409 3304 3 1508 217 208 0 0 chr6 121002175 121002223 -28514814 + ID4 SINE ID 2 49 -34 4 1508 330 87 0 0 chr6 121002256 121002302 -28514735 + (CCA)n Simple_repeat Simple_repeat 3 48 0 5 1508 270 0 0 0 chr6 121005200 121005230 -28511807 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1508 239 0 0 31 chr6 121005469 121005501 -28511536 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1508 1136 62 0 40 chr6 121006043 121006195 -28510842 - B1_Mus1 SINE Alu -1 147 2 8 1508 472 202 11 0 chr6 121007173 121007267 -28509770 + PB1D10 SINE Alu 22 116 -1 9 1508 1163 199 24 9 chr6 121007898 121008111 -28508926 + B3 SINE B2 1 216 0 1 1508 397 236 148 13 chr6 121008320 121008508 -28508529 - L1MB4 LINE L1 -4 6185 5987 1 1508 482 285 50 24 chr6 121008530 121008718 -28508319 - B3A SINE B2 -4 191 1 1 1508 423 259 133 38 chr6 121008912 121009185 -28507852 + L1ME3A LINE L1 5357 5661 -512 1 1508 448 223 43 35 chr6 121009191 121009307 -28507730 + PB1D10 SINE Alu 1 117 0 1 1508 257 68 0 22 chr6 121009326 121009371 -28507666 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1508 297 278 94 31 chr6 121009414 121009574 -28507463 + L1ME3A LINE L1 5653 5822 -342 1 1508 591 135 0 0 chr6 121009574 121009670 -28507367 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 1 1508 287 146 18 0 chr6 121009808 121009863 -28507174 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 1 1508 683 256 109 5 chr6 121009864 121010056 -28506981 - ID_B1 SINE B4 -9 215 4 1 1508 522 198 78 0 chr6 121010065 121010181 -28506856 - MER2 DNA MER2_type -127 218 94 1 1508 225 302 16 65 chr6 121010271 121010395 -28506642 + L1ME3A LINE L1 5832 5949 -224 1 1508 353 288 79 84 chr6 121010551 121010729 -28506308 + B3A SINE B2 17 193 -23 2 1508 447 19 0 0 chr6 121015124 121015176 -28501861 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1508 458 296 26 0 chr6 121015814 121015929 -28501108 + B1F1 SINE Alu 1 118 -31 2 1508 671 193 63 21 chr6 121016006 121016149 -28500888 + B1_Mur1 SINE Alu 1 149 0 2 1508 1407 152 13 5 chr6 121018380 121018604 -28498433 + URR1A DNA MER1_type 1 226 0 2 1508 211 175 35 0 chr6 121019181 121019238 -28497799 + G-rich Low_complexity Low_complexity 4 62 0 2 1508 291 312 67 43 chr6 121019602 121019766 -28497271 - MIRb SINE MIR -8 260 93 2 1508 180 300 0 39 chr6 121019971 121020023 -28497014 - L2c LINE L2 -14 3373 3324 2 1508 239 315 73 27 chr6 121020498 121020648 -28496389 + ORR1E LTR MaLR 34 190 -169 2 1508 1041 206 56 9 chr6 121021615 121021831 -28495206 + URR1A DNA MER1_type 1 226 0 2 1508 218 209 162 15 chr6 121022107 121022175 -28494862 + PB1D10 SINE Alu 2 79 -38 3 1508 210 212 164 15 chr6 121022353 121022420 -28494617 + PB1D10 SINE Alu 2 78 -39 3 1508 2094 133 18 12 chr6 121022459 121022786 -28494251 - ORR1A4 LTR MaLR 0 329 1 3 1508 1110 72 0 0 chr6 121022978 121023130 -28493907 - B2_Mm2 SINE B2 -43 152 1 3 1508 479 212 17 34 chr6 121023175 121023292 -28493745 + B3 SINE B2 98 212 -4 3 1508 285 333 10 10 chr6 121023822 121023919 -28493118 + L2a LINE L2 3292 3388 -38 3 1508 229 289 35 35 chr6 121023967 121024053 -28492984 + MIRb SINE MIR 37 122 -146 3 1508 1483 34 57 0 chr6 121025344 121025521 -28491516 + B2_Mm1t SINE B2 2 188 -5 3 1508 207 0 0 0 chr6 121025567 121025590 -28491447 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1508 1226 55 0 0 chr6 121025600 121025746 -28491291 + B1_Mm SINE Alu 1 146 -1 3 1508 342 0 0 0 chr6 121025758 121025796 -28491241 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 4 1508 222 281 47 0 chr6 121027549 121027613 -28489424 + ID4 SINE ID 8 74 -9 4 1508 535 306 121 55 chr6 121028082 121028355 -28488682 + B4A SINE B4 2 292 0 4 1508 205 292 105 77 chr6 121028360 121028570 -28488467 - L2b LINE L2 -8 3367 3182 4 1508 630 150 150 0 chr6 121029156 121029276 -28487761 + B1_Mus1 SINE Alu 1 138 -10 4 1508 231 36 0 0 chr6 121029857 121029885 -28487152 + (CAGGA)n Simple_repeat Simple_repeat 2 29 0 4 1508 652 180 0 123 chr6 121030087 121030233 -28486804 + B1_Mur4 SINE Alu 1 128 -22 4 1508 310 221 68 23 chr6 121030579 121030667 -28486370 - MTEb LTR MaLR -1 378 287 4 1508 180 0 0 0 chr6 121032144 121032164 -28484873 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1508 225 208 0 59 chr6 121032513 121032564 -28484473 - ID_B1 SINE B4 -3 221 174 4 1508 1109 85 100 22 chr6 121032642 121032822 -28484215 - Lx2 LINE L1 -2 6995 6802 5 1508 762 214 14 7 chr6 121032842 121032988 -28484049 - B1_Mur1 SINE Alu 0 149 3 5 1508 395 328 23 0 chr6 121033208 121033336 -28483701 + ID_B1 SINE B4 81 211 -13 5 1508 279 384 51 14 chr6 121033355 121033569 -28483468 - MIR SINE MIR 0 262 41 5 1508 382 256 56 0 chr6 121034630 121034720 -28482317 + RSINE1 SINE B4 2 96 -69 5 1508 767 156 27 34 chr6 121034734 121034880 -28482157 + B1_Mur3 SINE Alu 5 149 0 5 1508 183 288 68 0 chr6 121036185 121036244 -28480793 - L2b LINE L2 -18 3357 3295 5 1508 369 272 26 9 chr6 121036623 121036738 -28480299 + PB1 SINE Alu 3 119 -8 5 1508 401 248 47 9 chr6 121036779 121036885 -28480152 + PB1D10 SINE Alu 3 112 -5 5 1508 192 77 0 0 chr6 121037546 121037572 -28479465 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1508 528 236 8 16 chr6 121038165 121038294 -28478743 + RSINE1 SINE B4 9 136 -29 6 1508 298 216 204 0 chr6 121038321 121038409 -28478628 + PB1D10 SINE Alu 1 106 -11 6 1508 428 198 28 106 chr6 121038418 121038559 -28478478 + ID_B1 SINE B4 95 224 0 6 1508 3588 28 30 21 chr6 121039339 121039771 -28477266 + RLTR10C LTR ERVK 1 436 0 6 1508 1021 248 9 0 chr6 121040227 121040437 -28476600 - B3 SINE B2 -4 212 1 6 1508 288 0 0 0 chr6 121041261 121041293 -28475744 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1508 492 264 79 6 chr6 121041624 121041788 -28475249 + L1MB8 LINE L1 5131 5306 -840 6 1508 1191 61 0 7 chr6 121041789 121041937 -28475100 + B1_Mus1 SINE Alu 2 148 0 6 1508 500 294 147 53 chr6 121042117 121042493 -28474544 + L1MB8 LINE L1 5492 5879 -299 6 1508 324 0 0 0 chr6 121042493 121042529 -28474508 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1508 500 307 115 80 chr6 121042529 121042737 -28474300 + L1MB8 LINE L1 5880 6123 -55 6 1508 815 92 97 30 chr6 121042738 121042872 -28474165 - B1_Mus2 SINE Alu 0 147 5 6 1508 652 167 44 82 chr6 121042932 121043127 -28473910 - B3 SINE B2 -10 185 1 7 1508 382 211 133 0 chr6 121043129 121043247 -28473790 - B3 SINE B2 -2 196 64 7 1508 277 350 60 29 chr6 121043333 121043477 -28473560 - B4 SINE B4 -113 179 32 7 1508 222 200 91 0 chr6 121043678 121043733 -28473304 - B1F2 SINE Alu -87 62 3 7 1508 212 283 38 0 chr6 121044629 121044682 -28472355 + ID2 SINE ID 2 56 -27 7 1508 473 142 0 28 chr6 121044693 121044802 -28472235 + (TG)n Simple_repeat Simple_repeat 1 106 0 7 1508 730 221 150 12 chr6 121044802 121045054 -28471983 - MT2A LTR ERVL -114 487 85 7 1508 943 137 0 20 chr6 121045054 121045203 -28471834 + B1_Mus1 SINE Alu 3 148 0 7 1508 594 261 82 12 chr6 121045203 121045279 -28471758 - MT2A LTR ERVL -302 173 82 7 1508 243 0 0 0 chr6 121045279 121045306 -28471731 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1508 594 226 68 0 chr6 121045306 121045387 -28471650 - MT2A LTR ERVL -447 86 2 7 1508 644 123 113 9 chr6 121046148 121046263 -28470774 - B1_Mur3 SINE Alu -21 128 2 7 1508 314 246 0 14 chr6 121046296 121046370 -28470667 - PB1 SINE Alu -32 95 23 8 1508 238 59 0 0 chr6 121047420 121047454 -28469583 - B1_Mus2 SINE Alu -23 124 91 8 1508 291 141 0 0 chr6 121047458 121047522 -28469515 + (TCTG)n Simple_repeat Simple_repeat 4 67 0 8 1508 581 121 11 0 chr6 121047525 121047616 -28469421 - B1_Mur4 SINE Alu -58 92 1 8 1508 888 171 171 0 chr6 121047909 121048102 -28468935 + URR1A DNA MER1_type 1 226 0 8 1508 955 112 8 0 chr6 121048967 121049101 -28467936 - B1_Mus1 SINE Alu -13 135 1 8 1508 229 286 22 56 chr6 121049475 121049564 -28467473 + RMER15 LTR ERVL 336 421 -154 8 1508 248 378 81 25 chr6 121049900 121050148 -28466889 + L2c LINE L2 3106 3337 -38 8 1508 1048 304 30 27 chr6 121050274 121050643 -28466394 - Lx8 LINE L1 -163 7310 6941 8 1508 722 145 7 0 chr6 121051136 121051288 -28465749 + (CA)n Simple_repeat Simple_repeat 2 154 0 8 1508 312 175 181 56 chr6 121052483 121052590 -28464447 + PB1D10 SINE Alu 11 149 0 9 1508 558 285 30 37 chr6 121054237 121054401 -28462636 + RSINE1 SINE B4 1 163 -2 9 1508 347 246 8 90 chr6 121054645 121054672 -28462365 + MT2B LTR ERVL 142 157 -444 9 1508 534 191 47 16 chr6 121054672 121054800 -28462237 + B1F2 SINE Alu 2 133 -16 9 1508 282 29 0 0 chr6 121054807 121054842 -28462195 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1508 205 162 0 0 chr6 121055627 121055664 -28461373 + G-rich Low_complexity Low_complexity 1 37 0 9 1508 1003 117 14 0 chr6 121056298 121056443 -28460594 + B1_Mus1 SINE Alu 1 147 -1 9 1508 952 188 10 54 chr6 121057496 121057699 -28459338 + B3A SINE B2 5 198 0 9 1508 390 287 30 144 chr6 121057713 121057880 -28459157 + ID_B1 SINE B4 77 224 0 9 1508 342 178 13 52 chr6 121057883 121057960 -28459077 + B1F SINE Alu 73 146 -3 9 1508 954 173 0 0 chr6 121057960 121058110 -28458927 + B1_Mur4 SINE Alu 1 150 0 1 1508 227 308 94 19 chr6 121058148 121058254 -28458783 - MER70B LTR ERVL -429 149 36 1 1508 254 271 0 0 chr6 121058363 121058422 -28458615 - MIRb SINE MIR -16 252 194 1 1508 191 36 0 35 chr6 121058971 121059000 -28458037 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1508 223 277 24 0 chr6 121060131 121060214 -28456823 + (CGG)n Simple_repeat Simple_repeat 1 85 0 1 1508 246 333 20 30 chr6 121060718 121060817 -28456220 + MIR3 SINE MIR 82 179 -29 1 1508 531 0 0 0 chr6 121060997 121061056 -28455981 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1 1508 186 43 0 0 chr6 121061226 121061249 -28455788 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 1508 444 164 68 0 chr6 121061390 121061463 -28455574 - RSINE1 SINE B4 -31 134 57 1 1508 214 83 26 53 chr6 121061439 121061477 -28455560 - B4 SINE B4 -213 79 43 1 1508 625 315 103 15 chr6 121061767 121062096 -28454941 + ORR1E LTR MaLR 1 358 -1 1 1508 201 333 36 0 chr6 121062105 121062189 -28454848 - MIR SINE MIR -32 230 144 1 1508 1427 187 154 17 chr6 121062336 121062704 -28454333 + MTD LTR MaLR 12 405 -14 1 1508 241 254 95 0 chr6 121062761 121062824 -28454213 + ID4_ SINE ID 4 72 -11 1 1508 271 250 44 0 chr6 121062825 121062893 -28454144 + GA-rich Low_complexity Low_complexity 4 74 0 1 1508 742 190 6 11 chr6 121062895 121063076 -28453961 + G-rich Low_complexity Low_complexity 1 180 0 1 1508 233 200 0 83 chr6 121063250 121063310 -28453727 + 4.5SRNA scRNA scRNA 31 85 -9 1 1508 365 231 0 0 chr6 121063258 121063336 -28453701 + PB1D10 SINE Alu 36 113 -4 1 1508 565 289 0 0 chr6 121063851 121063979 -28453058 + RSINE1 SINE B4 3 130 -35 1 1508 276 104 14 29 chr6 121063994 121064050 -28452987 + (TTTTTG)n Simple_repeat Simple_repeat 1 57 0 1 1508 1160 49 7 7 chr6 121064050 121064195 -28452842 - B1_Mus2 SINE Alu -2 145 1 1 1508 276 104 14 29 chr6 121064195 121064207 -28452830 + (TTTTTG)n Simple_repeat Simple_repeat 2 12 0 1 1508 648 188 42 70 chr6 121064218 121064361 -28452676 + B1_Mur2 SINE Alu 2 140 -9 1 1508 608 219 42 0 chr6 121064393 121064512 -28452525 - RSINE1 SINE B4 -33 132 9 1 1508 234 0 0 0 chr6 121064677 121064703 -28452334 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1508 1214 36 0 0 chr6 121064703 121064840 -28452197 - B1_Mus2 SINE Alu -9 138 2 1 1508 772 204 142 12 chr6 121064916 121065085 -28451952 + B3 SINE B2 1 191 -25 1 1508 201 74 0 0 chr6 121065090 121065117 -28451920 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1 1508 732 80 0 0 chr6 121065283 121065383 -28451654 + (CA)n Simple_repeat Simple_repeat 2 101 0 1 1508 494 178 158 0 chr6 121066148 121066249 -28450788 + RSINE1 SINE B4 45 161 -4 1 1508 339 188 146 68 chr6 121066339 121066442 -28450595 + PB1D10 SINE Alu 7 117 0 1 1508 225 0 0 0 chr6 121067093 121067118 -28449919 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1 1508 878 228 43 38 chr6 121067228 121067438 -28449599 + B3 SINE B2 2 212 -4 1 1508 1345 67 83 0 chr6 121067797 121067815 -28449222 - B2_Mm2 SINE B2 0 195 178 1 1508 180 0 0 0 chr6 121067815 121067835 -28449202 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1508 1345 67 83 0 chr6 121067835 121067996 -28449041 - B2_Mm2 SINE B2 -18 177 2 1 1508 269 261 0 129 chr6 121068314 121068329 -28448708 + MT2B LTR ERVL 153 154 -447 1 1508 478 209 0 21 chr6 121068329 121068422 -28448615 + B1_Mur3 SINE Alu 2 92 -57 1 1508 505 234 49 42 chr6 121068517 121068660 -28448377 - RSINE1 SINE B4 -19 146 3 1 1508 218 213 0 0 chr6 121068796 121068843 -28448194 + A-rich Low_complexity Low_complexity 2 48 0 1 1508 25 31 0 0 chr6 121068886 121068918 -28448119 + AT_rich Low_complexity Low_complexity 1 32 0 1 1508 283 196 0 0 chr6 121068929 121068980 -28448057 + B2_Mm2 SINE B2 2 52 -143 1 1508 820 223 69 0 chr6 121068992 121069167 -28447870 + B3 SINE B2 30 216 0 1 1508 423 0 0 0 chr6 121069385 121069432 -28447605 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1508 1171 98 28 22 chr6 121069954 121070121 -28446916 + B2_Mm2 SINE B2 4 173 -22 1 1508 1044 218 9 9 chr6 121070121 121070334 -28446703 - B3 SINE B2 -3 213 1 1 1508 1195 63 0 0 chr6 121070455 121070597 -28446440 - B1_Mus1 SINE Alu -6 142 1 1 1508 216 182 0 0 chr6 121070820 121070864 -28446173 + C-rich Low_complexity Low_complexity 4 47 0 1 1508 363 269 30 61 chr6 121071733 121071832 -28445205 + RSINE1 SINE B4 8 103 -62 1 1508 1200 94 0 29 chr6 121071863 121072038 -28444999 - B2_Mm2 SINE B2 -25 170 1 1 1508 238 357 0 0 chr6 121072039 121072109 -28444928 + RSINE1 SINE B4 93 162 -3 1 1508 225 0 0 0 chr6 121072109 121072134 -28444903 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1 1508 766 170 56 7 chr6 121072198 121072340 -28444697 - B1_Mur4 SINE Alu -1 149 1 1 1508 273 125 0 0 chr6 121072376 121072432 -28444605 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 1 1508 904 108 0 23 chr6 121072446 121072567 -28444470 + B1_Mur4 SINE Alu 21 140 -10 1 1508 288 0 0 0 chr6 121072567 121072599 -28444438 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 1 1508 904 108 0 23 chr6 121072599 121072610 -28444427 + B1_Mur4 SINE Alu 141 150 0 1 1508 290 305 98 15 chr6 121072748 121072881 -28444156 - Charlie17a DNA MER1_type -56 163 20 1 1508 297 0 0 0 chr6 121073291 121073324 -28443713 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1508 251 314 14 0 chr6 121073485 121073555 -28443482 - MIRb SINE MIR -147 121 51 1 1508 180 267 67 0 chr6 121073650 121073695 -28443342 - L2 LINE L2 -520 2899 2852 1 1508 623 224 0 6 chr6 121073952 121074132 -28442905 + (CATA)n Simple_repeat Simple_repeat 2 180 0 1 1508 764 195 6 0 chr6 121074159 121074333 -28442704 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 1508 415 215 8 15 chr6 121074305 121074437 -28442600 + (CATA)n Simple_repeat Simple_repeat 1 131 0 1 1508 752 286 0 25 chr6 121074443 121074601 -28442436 - RSINE1 SINE B4 -10 155 2 1 1508 23 0 0 0 chr6 121074868 121074891 -28442146 + AT_rich Low_complexity Low_complexity 1 23 0 1 1508 504 0 0 0 chr6 121075135 121075191 -28441846 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1508 483 18 0 0 chr6 121075191 121075246 -28441791 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1508 849 149 0 22 chr6 121075334 121075512 -28441525 + CT-rich Low_complexity Low_complexity 4 177 0 1 1508 557 279 13 13 chr6 121075512 121075661 -28441376 - B1F SINE Alu 0 149 1 1 1508 442 244 17 0 chr6 121075814 121075916 -28441121 - PB1D7 SINE Alu 0 149 39 1 1508 900 172 14 0 chr6 121075971 121076116 -28440921 + B1_Mur3 SINE Alu 1 147 -2 1 1508 250 281 49 12 chr6 121076119 121076262 -28440775 - L1MD3 LINE L1 -1732 6053 5906 1 1508 1190 139 22 0 chr6 121076302 121076482 -28440555 + B2_Mm2 SINE B2 2 185 -10 1 1508 323 130 356 20 chr6 121076556 121076657 -28440380 + B2_Mm2 SINE B2 47 181 -14 1 1508 512 250 26 53 chr6 121076687 121076839 -28440198 + RSINE1 SINE B4 3 150 -15 1 1508 222 250 73 0 chr6 121077157 121077225 -28439812 + BC1_Mm scRNA scRNA 17 89 -63 1 1508 401 234 0 0 chr6 121077558 121077635 -28439402 - Charlie9 DNA MER1_type -2664 93 17 1 1508 414 0 0 0 chr6 121078161 121078207 -28438830 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1508 485 262 90 0 chr6 121078682 121078804 -28438233 - ID_B1 SINE B4 0 224 92 1 1508 546 258 25 0 chr6 121079228 121079348 -28437689 - ID_B1 SINE B4 -16 208 86 1 1508 256 193 0 17 chr6 121079952 121080010 -28437027 + G-rich Low_complexity Low_complexity 1 57 0 1 1508 183 219 0 0 chr6 121081509 121081541 -28435496 + MIRc SINE MIR 96 127 -141 1 1508 291 270 0 82 chr6 121081755 121081852 -28435185 - ID_B1 SINE B4 0 224 136 1 1508 950 168 0 13 chr6 121082047 121082198 -28434839 + B1_Mur2 SINE Alu 1 149 0 1 1508 1003 250 10 0 chr6 121082220 121082420 -28434617 + B3 SINE B2 2 203 -13 1 1508 342 0 0 0 chr6 121082429 121082467 -28434570 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1508 237 330 67 34 chr6 121082473 121082592 -28434445 + B3 SINE B2 1 123 -93 1 1508 1904 225 63 5 chr6 121082653 121083099 -28433938 - Ricksha DNA MuDR -876 2370 1899 1 1508 908 139 34 14 chr6 121083101 121083247 -28433790 - B1_Mur4 SINE Alu -1 149 1 1 1508 302 253 60 12 chr6 121083248 121083332 -28433705 - PB1D10 SINE Alu 0 117 30 1 1508 1378 259 55 57 chr6 121083375 121083899 -28433138 - Ricksha DNA MuDR -1397 1849 1327 1 1508 280 237 200 30 chr6 121083918 121084018 -28433019 - PB1D10 SINE Alu 0 117 1 1 1508 22 0 0 0 chr6 121084224 121084246 -28432791 + AT_rich Low_complexity Low_complexity 1 22 0 1 1508 918 101 49 35 chr6 121084246 121084390 -28432647 - B1_Mus2 SINE Alu 0 147 2 1 1508 330 245 20 7 chr6 121084390 121084432 -28432605 - ORR1B1-int LTR MaLR -861 648 605 1 1508 809 161 36 21 chr6 121084417 121084557 -28432480 - B1_Mur1 SINE Alu 0 149 8 1 1508 310 268 49 0 chr6 121084563 121084645 -28432392 - PB1D10 SINE Alu -8 109 24 1 1508 244 232 6 31 chr6 121085074 121085145 -28431892 + B1_Mur1 SINE Alu 60 126 -21 1 1508 25 0 0 0 chr6 121085650 121085675 -28431362 + AT_rich Low_complexity Low_complexity 1 25 0 1 1508 768 221 0 0 chr6 121085676 121085807 -28431230 + B1_Mur1 SINE Alu 1 131 -18 1 1508 489 279 0 67 chr6 121085807 121085826 -28431211 + ID_B1 SINE B4 82 221 -3 1 1508 513 256 26 116 chr6 121085868 121086023 -28431014 + ID_B1 SINE B4 78 218 -6 1 1508 398 237 43 0 chr6 121086061 121086154 -28430883 + B1F2 SINE Alu 31 127 -22 1 1508 468 0 0 0 chr6 121086154 121086206 -28430831 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1508 243 157 18 105 chr6 121086352 121086409 -28430628 - ORR1D2 LTR MaLR -316 54 3 2 1508 439 234 94 27 chr6 121087038 121087187 -28429850 - ID_B1 SINE B4 -5 219 61 2 1508 2581 157 14 0 chr6 121087276 121087691 -28429346 + MTC LTR MaLR 1 421 0 2 1508 318 250 0 0 chr6 121087798 121087862 -28429175 - PB1D10 SINE Alu -7 110 47 2 1508 441 215 41 16 chr6 121087863 121087980 -28429057 + B1_Mur1 SINE Alu 1 120 0 2 1508 272 268 0 0 chr6 121087980 121088036 -28429001 - B1F1 SINE Alu -89 60 5 2 1508 223 255 0 0 chr6 121088415 121088466 -28428571 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1508 318 106 0 21 chr6 121088976 121089024 -28428013 - B1F SINE Alu 0 149 103 2 1508 1129 195 0 67 chr6 121089395 121089620 -28427417 + B3 SINE B2 1 210 -6 2 1508 361 169 24 0 chr6 121089634 121089717 -28427320 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1508 448 287 93 7 chr6 121089724 121089875 -28427162 - RSINE1 SINE B4 -1 164 1 2 1508 674 136 0 43 chr6 121090397 121090512 -28426525 + B1_Mus2 SINE Alu 38 147 0 2 1508 365 225 8 74 chr6 121091228 121091348 -28425689 - B1F2 SINE Alu 0 117 3 2 1508 450 224 0 0 chr6 121091264 121091349 -28425688 - ID_B1 SINE B4 -57 167 83 2 1508 236 175 16 66 chr6 121091833 121091885 -28425152 + B1_Mur1 SINE Alu 91 139 -10 2 1508 524 89 13 0 chr6 121091885 121091964 -28425073 + (CAA)n Simple_repeat Simple_repeat 2 81 0 2 1508 558 0 0 0 chr6 121092149 121092211 -28424826 + (TTTAG)n Simple_repeat Simple_repeat 3 64 0 2 1508 1131 80 0 0 chr6 121092211 121092349 -28424688 - B1_Mus2 SINE Alu -9 138 1 2 1508 451 252 40 24 chr6 121092746 121092872 -28424165 + B1F2 SINE Alu 21 148 -1 2 1508 595 279 13 13 chr6 121094763 121094912 -28422125 + B1_Mur1 SINE Alu 1 149 0 2 1508 226 172 152 17 chr6 121094951 121095010 -28422027 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 2 1508 347 225 112 0 chr6 121095342 121095422 -28421615 + MTE2b LTR MaLR 20 108 -271 2 1508 585 235 26 9 chr6 121095598 121095714 -28421323 + PB1 SINE Alu 2 119 -8 2 1508 273 146 0 0 chr6 121095714 121095762 -28421275 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1508 220 111 22 22 chr6 121095802 121095848 -28421189 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 2 1508 471 255 151 0 chr6 121096589 121096695 -28420342 + ID_B1 SINE B4 87 208 -16 2 1508 509 292 28 99 chr6 121097394 121097607 -28419430 + B3A SINE B2 1 198 0 2 1508 485 235 16 80 chr6 121098021 121098146 -28418891 - B4A SINE B4 -174 118 2 2 1508 246 208 0 0 chr6 121098195 121098248 -28418789 + CT-rich Low_complexity Low_complexity 2 54 0 2 1508 623 203 15 96 chr6 121098249 121098385 -28418652 - B1F2 SINE Alu -15 134 10 2 1508 850 287 107 42 chr6 121098496 121098805 -28418232 - MER58B DNA MER1_type -3 338 10 2 1508 201 150 0 48 chr6 121098897 121098939 -28418098 + CT-rich Low_complexity Low_complexity 1 40 0 2 1508 440 237 7 127 chr6 121099023 121099173 -28417864 - B1F SINE Alu -1 148 17 2 1508 376 139 25 12 chr6 121099446 121099526 -28417511 + RMER1C Other Other 1067 1147 -195 2 1508 222 37 0 0 chr6 121099526 121099553 -28417484 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 2 1508 225 167 0 0 chr6 121099558 121099594 -28417443 - ID4_ SINE ID -46 37 2 2 1508 411 322 0 0 chr6 121100023 121100138 -28416899 + B3A SINE B2 3 117 -81 2 1508 878 186 12 6 chr6 121100139 121100307 -28416730 - URR1A DNA MER1_type 0 226 58 2 1508 247 325 0 0 chr6 121100316 121100393 -28416644 + B3A SINE B2 103 179 -19 2 1508 234 0 0 0 chr6 121100395 121100421 -28416616 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1508 716 315 56 39 chr6 121100506 121100863 -28416174 + RMER5 LTR ERV1 16 378 -156 2 1508 862 221 5 22 chr6 121100825 121101010 -28416027 - B3 SINE B2 -34 182 1 2 1508 588 233 90 28 chr6 121101022 121101199 -28415838 - B3 SINE B2 0 216 29 2 1508 367 179 30 0 chr6 121101197 121101264 -28415773 + RMER5 LTR ERV1 332 400 -134 2 1508 901 191 0 55 chr6 121101269 121101468 -28415569 + B2_Mm2 SINE B2 7 194 -1 2 1508 441 221 21 10 chr6 121101476 121101572 -28415465 + RMER5 LTR ERV1 438 534 0 2 1508 209 119 24 0 chr6 121101572 121101614 -28415423 + (CCAA)n Simple_repeat Simple_repeat 1 43 0 2 1508 227 289 66 0 chr6 121101747 121101823 -28415214 - ID4 SINE ID -1 82 2 2 1508 466 123 55 0 chr6 121102474 121102547 -28414490 + ID_B1 SINE B4 125 201 -23 2 1508 290 176 0 139 chr6 121102547 121102560 -28414477 + PB1D10 SINE Alu 44 117 0 2 1508 1468 195 201 17 chr6 121102602 121102956 -28414081 - MTD LTR MaLR 0 419 1 2 1508 283 263 26 0 chr6 121103063 121103139 -28413898 - ID4_ SINE ID -1 82 5 2 1508 374 213 104 21 chr6 121103367 121103463 -28413574 - B1_Mur2 SINE Alu -45 104 1 2 1508 448 243 25 67 chr6 121103463 121103523 -28413514 - B4 SINE B4 -206 86 32 2 1508 565 226 0 0 chr6 121103551 121103657 -28413380 - ID_B1 SINE B4 -1 223 118 2 1508 241 282 0 37 chr6 121103867 121103948 -28413089 - Helitron2Na_Mam RC Helitron? -164 160 83 2 1508 373 212 14 12 chr6 121104009 121104092 -28412945 + ID4_ SINE ID 6 84 -68 2 1508 339 96 0 0 chr6 121104316 121104368 -28412669 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1508 410 185 174 20 chr6 121105130 121105279 -28411758 + Lx8 LINE L1 7302 7473 0 2 1508 552 250 0 0 chr6 121105401 121105561 -28411476 + (CA)n Simple_repeat Simple_repeat 2 161 0 2 1508 183 204 102 0 chr6 121106778 121106827 -28410210 + L2 LINE L2 552 605 -2814 2 1508 1128 104 17 34 chr6 121106887 121107066 -28409971 - B2_Mm2 SINE B2 -19 176 1 2 1508 1403 60 33 5 chr6 121107227 121107411 -28409626 + B2_Mm1a SINE B2 1 189 -4 2 1508 262 326 154 17 chr6 121107539 121107832 -28409205 + L2 LINE L2 1447 1779 -1640 2 1508 465 213 37 9 chr6 121107933 121108042 -28408995 + PB1D10 SINE Alu 5 116 -1 2 1508 219 139 0 0 chr6 121108243 121108279 -28408758 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 2 1508 237 132 0 0 chr6 121108361 121108399 -28408638 + (TCC)n Simple_repeat Simple_repeat 1 38 0 2 1508 293 308 15 133 chr6 121108674 121108809 -28408228 - Tigger5 DNA MER2_type -2285 121 3 2 1508 709 256 73 6 chr6 121108830 121109007 -28408030 - MER44D DNA MER2_type -488 217 29 2 1508 589 189 7 14 chr6 121109244 121109389 -28407648 + CT-rich Low_complexity Low_complexity 6 149 0 2 1508 317 333 83 0 chr6 121109394 121109502 -28407535 - PB1D10 SINE Alu 0 117 1 2 1509 2064 122 26 62 chr6 121111950 121112291 -28404746 - ORR1A4 LTR MaLR 0 329 1 2 1509 1409 146 73 42 chr6 121112291 121112571 -28404466 - ORR1B1 LTR MaLR -79 315 26 2 1509 218 191 24 0 chr6 121113183 121113225 -28403812 - PB1D10 SINE Alu -63 54 12 2 1509 253 274 0 0 chr6 121113188 121113239 -28403798 - ID_B1 SINE B4 -95 129 79 2 1509 306 167 0 0 chr6 121113295 121113355 -28403682 + GA-rich Low_complexity Low_complexity 3 62 0 2 1509 444 231 8 33 chr6 121113717 121113838 -28403199 + PB1D9 SINE Alu 1 118 -2 2 1509 1037 32 0 0 chr6 121113924 121114048 -28402989 - L1_Mus1 LINE L1 -808 5759 5636 2 1509 6499 58 6 1 chr6 121114048 121114849 -28402188 + L1_Mus1 LINE L1 5763 6567 0 2 1509 391 310 45 30 chr6 121114954 121115087 -28401950 + ID_B1 SINE B4 80 214 -10 2 1509 487 258 169 1 chr6 121115125 121115390 -28401647 - L1MB3 LINE L1 -95 6085 5766 2 1509 246 268 24 35 chr6 121115546 121115631 -28401406 - Charlie9 DNA MER1_type -2667 90 7 2 1509 286 217 0 42 chr6 121115910 121116006 -28401031 + CT-rich Low_complexity Low_complexity 6 97 0 2 1509 282 217 0 0 chr6 121116821 121116881 -28400156 + ID4 SINE ID 15 74 -9 2 1509 1189 167 14 9 chr6 121118546 121118758 -28398279 + B3 SINE B2 1 213 -3 2 1509 246 294 51 68 chr6 121118935 121119052 -28397985 + PB1D10 SINE Alu 1 115 -2 2 1509 201 74 0 0 chr6 121119062 121119089 -28397948 + (GGA)n Simple_repeat Simple_repeat 3 29 0 2 1509 777 318 14 37 chr6 121119344 121119641 -28397396 + B4A SINE B4 1 290 -2 2 1509 2333 156 79 8 chr6 121119857 121120250 -28396787 + MTC LTR MaLR 1 421 0 2 1509 700 271 15 86 chr6 121121616 121121814 -28395223 - B3A SINE B2 -12 186 3 2 1509 1327 90 26 16 chr6 121122422 121122614 -28394423 + B2_Mm2 SINE B2 2 195 0 2 1509 228 340 10 39 chr6 121122650 121122754 -28394283 + PB1D10 SINE Alu 16 116 -1 2 1509 339 216 53 13 chr6 121122759 121122834 -28394203 + ID4 SINE ID 3 80 -3 2 1509 188 300 12 70 chr6 121123027 121123113 -28393924 + L2b LINE L2 3272 3352 -23 2 1509 224 294 14 14 chr6 121123949 121124018 -28393019 + MIRc SINE MIR 118 186 -82 2 1509 208 338 166 21 chr6 121124524 121124664 -28392373 + MIR SINE MIR 3 161 -107 2 1509 512 243 171 50 chr6 121124740 121124939 -28392098 - ID_B1 SINE B4 0 224 2 2 1509 197 346 51 0 chr6 121125041 121125119 -28391918 + MIRc SINE MIR 187 268 0 2 1509 218 264 0 0 chr6 121125569 121125622 -28391415 + CT-rich Low_complexity Low_complexity 2 54 0 2 1509 276 290 91 27 chr6 121126932 121127042 -28389995 + MIR SINE MIR 117 233 -29 2 1509 258 273 36 72 chr6 121127515 121127598 -28389439 + ID4_ SINE ID 2 81 -2 2 1509 635 245 75 25 chr6 121127540 121127699 -28389338 + ID_B1 SINE B4 25 191 -33 2 1509 2430 128 43 15 chr6 121127718 121128114 -28388923 + MTB_Mm LTR MaLR 1 407 0 2 1509 676 160 20 14 chr6 121129309 121129455 -28387582 + CT-rich Low_complexity Low_complexity 5 151 0 2 1509 770 301 31 107 chr6 121129470 121129760 -28387277 - B4A SINE B4 -23 269 2 2 1509 476 286 167 11 chr6 121129805 121129985 -28387052 + B3 SINE B2 1 208 -8 3 1509 21 0 0 0 chr6 121129986 121130007 -28387030 + AT_rich Low_complexity Low_complexity 1 21 0 3 1509 248 161 36 0 chr6 121130517 121130573 -28386464 + (TATG)n Simple_repeat Simple_repeat 2 59 0 3 1509 1930 189 148 29 chr6 121130573 121131019 -28386018 - RLTR19 LTR ERVK 0 499 1 3 1509 390 21 0 0 chr6 121131019 121131066 -28385971 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1509 970 26 0 0 chr6 121131066 121131179 -28385858 - RLTR13D1 LTR ERVK -303 503 391 3 1509 279 0 0 0 chr6 121131179 121131210 -28385827 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1509 439 226 11 11 chr6 121131210 121131225 -28385812 - RLTR13D3 LTR ERVK -496 618 604 3 1509 365 218 57 11 chr6 121131213 121131301 -28385736 - PB1 SINE Alu -20 107 16 3 1509 187 309 22 67 chr6 121131364 121131441 -28385596 + L2a LINE L2 3341 3413 -13 3 1509 670 188 133 0 chr6 121131441 121131569 -28385468 + RSINE1 SINE B4 2 146 -19 3 1509 187 309 22 67 chr6 121131569 121131581 -28385456 + L2a LINE L2 3414 3425 -1 3 1509 216 158 0 0 chr6 121131588 121131626 -28385411 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 3 1509 538 224 0 9 chr6 121131639 121131733 -28385304 - B3 SINE B2 -5 211 119 3 1509 4657 79 139 19 chr6 121131733 121132453 -28384584 - RLTR13D1 LTR ERVK 0 806 1 3 1509 773 179 24 0 chr6 121132453 121132573 -28384464 - B3 SINE B2 -93 123 1 3 1509 793 99 104 30 chr6 121132976 121133111 -28383926 + B1_Mus2 SINE Alu 1 145 -2 3 1509 905 118 26 65 chr6 121135152 121135306 -28381731 - B1_Mus1 SINE Alu 0 148 1 3 1509 225 196 39 0 chr6 121136153 121136204 -28380833 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1509 933 267 38 27 chr6 121136205 121136467 -28380570 - B4A SINE B4 -1 291 27 3 1509 1053 187 4 103 chr6 121136470 121136703 -28380334 - B3 SINE B2 -5 211 2 3 1509 555 301 16 38 chr6 121136727 121136910 -28380127 - B3A SINE B2 -1 197 19 3 1509 1284 63 56 28 chr6 121136945 121137125 -28379912 - B2_Mm2 SINE B2 -10 185 1 3 1509 1625 165 125 15 chr6 121138824 121139163 -28377874 - MTD LTR MaLR -20 399 35 3 1509 1284 93 0 0 chr6 121139252 121139531 -28377506 + (TC)n Simple_repeat Simple_repeat 1 279 0 3 1509 1422 46 17 0 chr6 121139536 121139710 -28377327 - B2_Mm2 SINE B2 -16 179 3 3 1509 303 265 0 0 chr6 121139909 121139990 -28377047 + ID4_ SINE ID 15 95 -57 3 1509 1209 22 0 0 chr6 121140853 121140987 -28376050 + B1_Mus2 SINE Alu 1 134 -13 3 1509 438 36 0 0 chr6 121140987 121141043 -28375994 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 3 1509 214 171 0 0 chr6 121142205 121142240 -28374797 + (ATG)n Simple_repeat Simple_repeat 3 37 0 3 1509 292 231 77 0 chr6 121142246 121142311 -28374726 - B4 SINE B4 -221 71 2 3 1509 226 284 15 0 chr6 121142364 121142431 -28374606 - PB1 SINE Alu -30 97 30 3 1509 616 215 200 21 chr6 121142474 121142664 -28374373 + ID_B1 SINE B4 1 224 0 3 1509 830 163 23 193 chr6 121142946 121143185 -28373852 - B3 SINE B2 -4 194 1 3 1509 1139 195 57 63 chr6 121145986 121146303 -28370734 + MER33 DNA MER1_type 8 322 -2 3 1509 326 276 150 58 chr6 121146369 121146542 -28370495 - MIR3 SINE MIR -18 190 2 3 1509 745 239 92 0 chr6 121147189 121147373 -28369664 + B3 SINE B2 5 205 -11 3 1509 1180 155 0 25 chr6 121147401 121147560 -28369477 + B2_Mm2 SINE B2 1 158 -37 3 1509 213 39 0 0 chr6 121147560 121147586 -28369451 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 3 1509 1180 155 0 25 chr6 121147586 121147624 -28369413 + B2_Mm2 SINE B2 159 193 -2 3 1509 632 13 13 0 chr6 121148469 121148546 -28368491 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1509 285 263 16 179 chr6 121148553 121148645 -28368392 + Tigger7 DNA MER2_type 2294 2368 -123 3 1509 714 244 6 37 chr6 121148645 121148807 -28368230 - RSINE1 SINE B4 -7 158 2 3 1509 285 263 16 179 chr6 121148807 121148862 -28368175 + Tigger7 DNA MER2_type 2369 2410 -81 3 1509 180 0 0 0 chr6 121148862 121148882 -28368155 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1509 285 263 16 179 chr6 121148882 121148923 -28368114 + Tigger7 DNA MER2_type 2411 2452 -39 3 1509 4058 40 17 0 chr6 121148932 121149408 -28367629 - L1Md_F2 LINE L1 -5 6577 6094 3 1509 186 43 0 0 chr6 121149473 121149496 -28367541 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1509 206 147 0 56 chr6 121149539 121149611 -28367426 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1509 405 120 0 63 chr6 121149648 121149790 -28367247 + (TG)n Simple_repeat Simple_repeat 2 134 0 3 1509 315 152 6 63 chr6 121149908 121150083 -28366954 + (TG)n Simple_repeat Simple_repeat 2 166 0 3 1509 400 231 56 16 chr6 121150107 121150219 -28366818 - ID_B1 SINE B4 -89 203 84 3 1509 404 268 57 93 chr6 121150229 121150267 -28366770 + B4A SINE B4 60 92 -200 3 1509 847 113 0 9 chr6 121150267 121150383 -28366654 + B1_Mus2 SINE Alu 3 117 -30 3 1509 1251 54 0 0 chr6 121150415 121150562 -28366475 + B1_Mus2 SINE Alu 1 147 0 3 1509 180 0 0 0 chr6 121150562 121150582 -28366455 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1509 260 363 127 20 chr6 121150661 121150858 -28366179 - MIR SINE MIR -34 228 11 3 1509 423 68 0 0 chr6 121151501 121151560 -28365477 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1509 1214 61 0 7 chr6 121151648 121151796 -28365241 - B1_Mus1 SINE Alu -1 147 1 3 1509 2419 61 3 69 chr6 121151820 121151973 -28365064 + ORR1A2 LTR MaLR 1 134 -193 3 1509 1886 170 108 38 chr6 121151973 121152390 -28364647 - RLTR41 LTR ERV1 0 446 1 3 1509 2419 61 3 69 chr6 121152390 121152586 -28364451 + ORR1A2 LTR MaLR 135 327 0 3 1509 1783 217 191 34 chr6 121152963 121153704 -28363333 + RMER1B Other Other 92 891 -175 3 1509 459 208 26 20 chr6 121153844 121153997 -28363040 + RMER1B Other Other 916 1046 -20 3 1509 270 242 28 120 chr6 121154860 121154968 -28362069 + PB1D10 SINE Alu 17 114 -3 3 1509 617 163 90 62 chr6 121154980 121155124 -28361913 + B1_Mur3 SINE Alu 1 148 -1 3 1509 940 97 6 13 chr6 121155137 121155293 -28361744 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 3 1509 302 316 26 0 chr6 121155309 121155385 -28361652 + ID4_ SINE ID 2 79 -4 3 1509 255 320 13 0 chr6 121155769 121155847 -28361190 - ID SINE ID -144 80 2 3 1509 338 275 174 35 chr6 121155851 121156138 -28360899 - MLT2B1 LTR ERVL -61 506 20 3 1509 297 0 0 0 chr6 121156138 121156171 -28360866 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1509 26 30 0 0 chr6 121156350 121156383 -28360654 + AT_rich Low_complexity Low_complexity 1 33 0 3 1509 913 61 73 29 chr6 121156388 121156524 -28360513 - B1_Mus1 SINE Alu -1 147 6 3 1509 1058 160 53 34 chr6 121156572 121156779 -28360258 - B3 SINE B2 -5 211 1 3 1509 495 292 89 0 chr6 121156811 121156979 -28360058 - MLT1B LTR MaLR -6 384 202 3 1509 267 247 0 0 chr6 121157010 121157083 -28359954 + CT-rich Low_complexity Low_complexity 4 76 0 3 1509 922 42 34 0 chr6 121157083 121157202 -28359835 - B1_Mus1 SINE Alu 0 148 26 3 1509 301 214 42 53 chr6 121157167 121157285 -28359752 - MLT1B LTR MaLR -177 213 104 3 1509 2473 211 64 47 chr6 121157286 121157907 -28359130 - RMER1C Other Other -31 1311 680 3 1509 1004 113 21 14 chr6 121157966 121158109 -28358928 - B1_Mur4 SINE Alu -2 148 5 3 1509 1048 207 16 0 chr6 121158110 121158303 -28358734 - B3 SINE B2 -11 205 10 3 1509 1124 73 0 0 chr6 121158303 121158440 -28358597 + B1_Mus2 SINE Alu 1 137 -10 3 1509 372 43 0 0 chr6 121158441 121158487 -28358550 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 3 1509 253 178 22 0 chr6 121158527 121158572 -28358465 - MLT1B LTR MaLR -286 88 43 3 1509 279 0 0 0 chr6 121159079 121159110 -28357927 + (TTA)n Simple_repeat Simple_repeat 2 32 0 3 1509 978 118 22 0 chr6 121159110 121159245 -28357792 - B1_Mur4 SINE Alu -12 138 1 3 1509 195 317 69 0 chr6 121159459 121159560 -28357477 - L2c LINE L2 -55 3332 3225 3 1509 635 150 117 62 chr6 121159875 121160003 -28357034 + B1_Mur2 SINE Alu 1 135 -14 3 1509 181 186 0 48 chr6 121161928 121161990 -28355047 + C-rich Low_complexity Low_complexity 3 61 0 3 1509 207 318 44 66 chr6 121162186 121162277 -28354760 + MIRm SINE MIR 64 152 -124 3 1509 203 216 20 0 chr6 121162348 121162399 -28354638 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1509 671 234 7 33 chr6 121162466 121162616 -28354421 - B1_Mur1 SINE Alu -1 148 3 3 1509 533 211 0 37 chr6 121162680 121162867 -28354170 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1509 400 302 28 107 chr6 121162871 121163049 -28353988 - RSINE1 SINE B4 0 165 2 3 1509 208 196 39 0 chr6 121163438 121163489 -28353548 + CT-rich Low_complexity Low_complexity 2 54 0 3 1509 435 87 319 88 chr6 121163526 121163639 -28353398 - B2_Mm2 SINE B2 -10 185 47 3 1509 932 81 196 0 chr6 121163674 121163822 -28353215 - B2_Mm1t SINE B2 -14 179 3 3 1509 256 241 0 67 chr6 121163902 121163991 -28353046 - ID4 SINE ID 0 83 1 3 1509 781 170 0 47 chr6 121165873 121166021 -28351016 - B1_Mus2 SINE Alu -1 146 6 3 1509 360 322 112 29 chr6 121165878 121166083 -28350954 - ID_B1 SINE B4 0 224 3 3 1509 299 267 63 34 chr6 121167394 121167520 -28349517 + MIR SINE MIR 18 153 -123 3 1509 296 331 107 72 chr6 121167802 121168030 -28349007 - ORR1E LTR MaLR -142 242 8 3 1509 223 262 0 0 chr6 121168242 121168284 -28348753 - ID4 SINE ID -16 67 26 3 1509 180 77 0 0 chr6 121168555 121168581 -28348456 + (TTTTTA)n Simple_repeat Simple_repeat 2 27 0 3 1509 774 60 0 0 chr6 121168765 121168865 -28348172 + (GGA)n Simple_repeat Simple_repeat 1 100 0 3 1509 255 295 50 25 chr6 121171615 121171695 -28345342 - ID4 SINE ID 0 83 2 3 1509 281 300 70 0 chr6 121172002 121172102 -28344935 - MIRb SINE MIR -158 110 4 3 1509 306 0 0 0 chr6 121172674 121172708 -28344329 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1509 249 33 0 0 chr6 121173678 121173708 -28343329 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1509 545 253 82 0 chr6 121176670 121176729 -28340308 - Tigger7 DNA MER2_type -24 2467 2402 3 1509 207 0 0 0 chr6 121176729 121176752 -28340285 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 3 1509 545 253 82 0 chr6 121176752 121176874 -28340163 - Tigger7 DNA MER2_type -90 2401 2272 3 1509 2098 130 181 13 chr6 121177855 121178252 -28338785 + RMER4A LTR ERVK 1 464 -2 4 1509 703 197 38 0 chr6 121178931 121179063 -28337974 + B3A SINE B2 2 138 -60 4 1509 351 0 0 0 chr6 121179084 121179123 -28337914 + (TC)n Simple_repeat Simple_repeat 1 39 0 4 1509 414 0 0 0 chr6 121179126 121179172 -28337865 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1509 570 112 138 42 chr6 121179668 121179803 -28337234 - MT2A LTR ERVL 0 601 406 4 1509 259 250 26 111 chr6 121179811 121179824 -28337213 + MT2B LTR ERVL 150 152 -449 4 1509 580 279 0 8 chr6 121179824 121179954 -28337083 + B1F2 SINE Alu 1 129 -20 4 1509 304 256 112 59 chr6 121179989 121180282 -28336755 + L1MD LINE L1 3168 3481 -2665 4 1509 1141 50 0 0 chr6 121180289 121180428 -28336609 + B1_Mus1 SINE Alu 10 148 0 4 1509 210 24 70 23 chr6 121180428 121180471 -28336566 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 4 1509 308 24 24 0 chr6 121180488 121180529 -28336508 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1509 632 189 0 0 chr6 121180565 121180671 -28336366 - B3 SINE B2 -98 118 13 4 1509 579 229 45 97 chr6 121180678 121180781 -28336256 + L1MD LINE L1 3483 3581 -2565 4 1509 1278 126 5 5 chr6 121180781 121180972 -28336065 + B2_Mm1t SINE B2 1 191 -2 4 1509 579 229 45 97 chr6 121180972 121181115 -28335922 + L1MD LINE L1 3582 3716 -2430 4 1509 458 264 35 23 chr6 121181191 121181362 -28335675 - L1MD LINE L1 -3714 2432 2260 4 1509 271 310 75 32 chr6 121181762 121181898 -28335139 - MTEa LTR MaLR 0 379 218 4 1509 230 234 0 0 chr6 121181929 121181976 -28335061 - MTEa LTR MaLR -229 130 84 4 1509 818 287 43 17 chr6 121182130 121182478 -28334559 - L1MA4 LINE L1 -279 6021 5655 4 1509 1048 339 84 41 chr6 121182495 121183151 -28333886 - Lx8 LINE L1 -2 7471 6788 4 1509 2062 142 3 58 chr6 121183230 121183575 -28333462 - ORR1A3 LTR MaLR 0 326 1 4 1509 323 321 104 0 chr6 121183575 121183709 -28333328 - Lx8 LINE L1 -1014 6459 6312 4 1509 325 272 68 0 chr6 121183711 121183814 -28333223 + L1M2 LINE L1 5546 5655 -636 4 1509 1860 112 95 103 chr6 121183819 121184188 -28332849 - ORR1B1 LTR MaLR 0 394 29 4 1509 865 279 84 18 chr6 121184188 121184664 -28332373 + Lx8 LINE L1 5600 6155 -1318 4 1509 627 275 0 81 chr6 121184693 121184903 -28332134 + B3A SINE B2 1 193 -5 4 1509 216 0 0 0 chr6 121185276 121185300 -28331737 + (CAGC)n Simple_repeat Simple_repeat 1 24 0 4 1509 200 189 0 0 chr6 121185736 121185773 -28331264 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1509 332 119 0 17 chr6 121185844 121185904 -28331133 + (TCC)n Simple_repeat Simple_repeat 3 61 0 4 1509 591 255 20 66 chr6 121185907 121186083 -28330954 - ID_B1 SINE B4 -46 246 79 4 1509 1045 213 41 12 chr6 121186083 121186325 -28330712 - RLTR24 LTR ERV1 0 529 281 4 1509 1587 150 19 160 chr6 121186322 121186446 -28330591 - RLTR24 LTR ERV1 -174 355 271 4 1509 301 24 0 0 chr6 121186446 121186488 -28330549 - L1Md_F2 LINE L1 -12 6570 6529 4 1509 1587 150 19 160 chr6 121186488 121186776 -28330261 - RLTR24 LTR ERV1 -259 270 1 4 1509 302 285 113 61 chr6 121186911 121186985 -28330052 + L1M2 LINE L1 2972 3056 -3087 4 1509 1130 78 0 0 chr6 121186985 121187126 -28329911 + B1_Mus1 SINE Alu 1 141 -7 4 1509 302 285 113 61 chr6 121187126 121187264 -28329773 + L1M2 LINE L1 3057 3195 -2948 4 1509 796 180 0 35 chr6 121188513 121188657 -28328380 + B1_Mus2 SINE Alu 1 139 -8 4 1509 233 111 44 0 chr6 121188666 121188711 -28328326 + GA-rich Low_complexity Low_complexity 3 49 0 4 1509 672 164 90 0 chr6 121188855 121188977 -28328060 - B1_Mus2 SINE Alu -5 142 10 4 1509 231 179 0 0 chr6 121188980 121189019 -28328018 + ID_B1 SINE B4 177 215 -9 4 1509 3704 55 0 2 chr6 121189302 121189753 -28327284 - L1_Mus1 LINE L1 0 6567 6118 4 1509 294 196 19 10 chr6 121190031 121190134 -28326903 + CT-rich Low_complexity Low_complexity 2 105 0 4 1509 803 257 102 60 chr6 121190307 121190708 -28326329 + L1MD1 LINE L1 5456 5873 -369 4 1509 1887 197 147 9 chr6 121190760 121191216 -28325821 - RMER5 LTR ERV1 -1 533 15 4 1509 330 281 233 19 chr6 121191239 121191449 -28325588 + L1MD1 LINE L1 5970 6224 -18 4 1509 291 93 0 0 chr6 121192019 121192062 -28324975 + (TGG)n Simple_repeat Simple_repeat 2 44 0 4 1509 214 73 48 24 chr6 121192708 121192750 -28324287 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 4 1509 302 283 0 51 chr6 121192918 121193035 -28324002 - B1F2 SINE Alu -7 113 2 4 1509 225 339 83 0 chr6 121193190 121193358 -28323679 - L1MC4 LINE L1 -441 7601 7420 4 1509 531 292 101 8 chr6 121193623 121193861 -28323176 - L1MC4 LINE L1 -1103 6939 6680 4 1509 516 32 0 0 chr6 121194668 121194730 -28322307 + (GAA)n Simple_repeat Simple_repeat 3 64 0 4 1509 531 0 0 0 chr6 121194925 121194984 -28322053 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1509 331 266 64 29 chr6 121197499 121197512 -28319525 + B4 SINE B4 83 143 -149 4 1509 481 230 30 10 chr6 121197512 121197613 -28319424 + PB1D7 SINE Alu 15 117 -3 4 1509 331 266 64 29 chr6 121197613 121197626 -28319411 + B4 SINE B4 144 218 -74 4 1509 423 215 172 21 chr6 121198542 121198730 -28318307 - B4 SINE B4 0 292 2 4 1509 446 206 307 6 chr6 121198775 121198941 -28318096 - B3 SINE B2 0 216 1 4 1509 302 272 25 0 chr6 121199107 121199188 -28317849 + ID2 SINE ID 1 83 0 4 1509 478 194 32 0 chr6 121199198 121199322 -28317715 + G-rich Low_complexity Low_complexity 6 133 0 4 1509 600 266 48 14 chr6 121199433 121199578 -28317459 + RSINE1 SINE B4 2 151 -14 4 1509 423 0 0 0 chr6 121199580 121199627 -28317410 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1509 267 275 14 14 chr6 121199675 121199745 -28317292 + RSINE1 SINE B4 3 72 -93 4 1509 222 245 0 36 chr6 121199988 121200043 -28316994 + B1F SINE Alu 3 55 -94 4 1509 409 257 30 0 chr6 121200441 121200542 -28316495 - PB1D7 SINE Alu -15 105 2 4 1509 422 309 90 6 chr6 121200729 121200895 -28316142 + B3A SINE B2 1 180 -18 4 1509 604 339 21 29 chr6 121200917 121201160 -28315877 + B4A SINE B4 24 264 -28 4 1509 435 87 0 0 chr6 121201566 121201635 -28315402 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1509 411 253 71 71 chr6 121201635 121201818 -28315219 + LTR88b LTR Gypsy? 617 799 -38 4 1509 869 170 5 0 chr6 121203019 121203225 -28313812 + CT-rich Low_complexity Low_complexity 1 206 0 4 1509 963 146 21 0 chr6 121203225 121203369 -28313668 - B1_Mus1 SINE Alu 0 148 2 4 1509 187 279 111 61 chr6 121203635 121203734 -28313303 - L3 LINE CR1 -1118 3371 3268 4 1509 1161 62 7 0 chr6 121203967 121204112 -28312925 + B1_Mm SINE Alu 2 147 0 4 1509 535 200 253 45 chr6 121204314 121204492 -28312545 - B3 SINE B2 -1 215 1 4 1509 843 147 15 30 chr6 121204500 121204633 -28312404 + B1_Mur2 SINE Alu 19 149 0 4 1509 241 26 26 26 chr6 121204650 121204689 -28312348 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 4 1509 382 229 10 10 chr6 121205672 121205769 -28311268 - L1MA5 LINE L1 -33 6267 6171 4 1509 1181 271 117 11 chr6 121205845 121206222 -28310815 + MTD LTR MaLR 1 417 -2 4 1509 270 254 0 0 chr6 121206341 121206400 -28310637 - L1M4 LINE L1 -3483 2663 2605 4 1509 379 271 40 60 chr6 121206488 121206637 -28310400 - RSINE1 SINE B4 -15 150 5 4 1509 878 290 20 20 chr6 121206638 121207036 -28310001 - L1M2 LINE L1 -3546 3299 2902 4 1509 260 285 58 0 chr6 121207180 121207287 -28309750 - B1F2 SINE Alu -1 119 6 4 1509 1084 114 6 6 chr6 121207371 121207548 -28309489 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 4 1509 984 128 0 0 chr6 121207553 121207701 -28309336 - B2_Mm2 SINE B2 -46 149 2 4 1509 548 229 51 51 chr6 121207717 121207892 -28309145 - L1M2 LINE L1 -4251 2598 2424 4 1509 945 278 90 29 chr6 121207887 121208389 -28308648 - L1M2 LINE L1 -4559 2290 1752 4 1509 423 0 0 0 chr6 121208389 121208436 -28308601 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1509 945 278 90 29 chr6 121208436 121208521 -28308516 - L1M2 LINE L1 -5098 1751 1667 4 1509 920 208 0 41 chr6 121208545 121208741 -28308296 - B3 SINE B2 -1 215 28 4 1509 355 311 58 29 chr6 121208937 121209076 -28307961 - RSINE1 SINE B4 -15 150 8 4 1509 1290 223 35 117 chr6 121209417 121209818 -28307219 - MTE2a LTR MaLR -8 371 4 4 1509 1019 237 5 23 chr6 121209821 121210041 -28306996 + B3 SINE B2 1 216 0 4 1509 237 33 0 0 chr6 121210951 121210981 -28306056 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1509 204 40 0 0 chr6 121211296 121211321 -28305716 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 4 1509 424 316 93 7 chr6 121211627 121211767 -28305270 + RSINE1 SINE B4 3 154 -11 4 1509 651 171 125 28 chr6 121213220 121213364 -28303673 - RSINE1 SINE B4 -5 160 3 4 1509 968 236 48 18 chr6 121213841 121214075 -28302962 + MTD LTR MaLR 3 227 -192 4 1509 584 77 11 0 chr6 121214218 121214309 -28302728 + (CA)n Simple_repeat Simple_repeat 2 93 0 4 1509 220 133 98 16 chr6 121214325 121214386 -28302651 + (CACAC)n Simple_repeat Simple_repeat 5 70 0 4 1509 961 204 72 38 chr6 121214453 121214662 -28302375 - B3 SINE B2 0 216 1 4 1509 365 153 0 14 chr6 121214662 121214735 -28302302 + (TATG)n Simple_repeat Simple_repeat 1 72 0 4 1509 565 238 157 10 chr6 121214735 121214896 -28302141 - B3A SINE B2 -13 203 26 4 1509 2139 92 18 65 chr6 121215008 121215345 -28301692 + ORR1A4 LTR MaLR 1 321 -8 4 1509 947 226 174 22 chr6 121216058 121216379 -28300658 - ORR1D1 LTR MaLR 0 370 1 4 1509 5878 212 65 24 chr6 121216381 121217695 -28299342 - ORR1D1-int LTR MaLR -2 1368 1 4 1509 1349 196 92 29 chr6 121217700 121218047 -28298990 - ORR1D1 LTR MaLR -5 369 1 4 1509 723 95 0 0 chr6 121219579 121219684 -28297353 + (TTCCC)n Simple_repeat Simple_repeat 4 108 0 4 1509 237 392 62 0 chr6 121220057 121220187 -28296850 - MER58B DNA MER1_type 0 341 204 4 1509 274 276 56 33 chr6 121220882 121220972 -28296065 + MLT1A1 LTR MaLR 307 398 -10 4 1509 2568 162 132 56 chr6 121221227 121221795 -28295242 - RMER19C LTR ERVK 0 611 1 4 1509 218 182 44 29 chr6 121221819 121221887 -28295150 + (TTA)n Simple_repeat Simple_repeat 1 69 0 4 1509 365 286 169 22 chr6 121221887 121222023 -28295014 - RSINE1 SINE B4 -7 158 3 4 1509 954 206 39 10 chr6 121222052 121222258 -28294779 - B3 SINE B2 -4 212 1 4 1509 354 313 57 104 chr6 121222330 121222665 -28294372 - ORR1D1 LTR MaLR -1 373 55 4 1509 380 69 22 54 chr6 121222832 121222924 -28294113 + (CAAAAA)n Simple_repeat Simple_repeat 2 90 0 5 1509 1115 279 74 70 chr6 121223311 121223784 -28293253 - MT2A LTR ERVL -2 531 57 5 1509 1255 27 0 7 chr6 121224912 121225050 -28291987 + B1_Mus2 SINE Alu 1 138 -9 5 1509 615 48 0 0 chr6 121225050 121225133 -28291904 + (CAAAC)n Simple_repeat Simple_repeat 2 84 0 5 1509 457 284 0 0 chr6 121226106 121226208 -28290829 - MTE2b LTR MaLR -80 299 198 5 1509 956 173 66 47 chr6 121226210 121226422 -28290615 + B3 SINE B2 1 216 0 5 1509 279 249 70 0 chr6 121226537 121226649 -28290388 - B4 SINE B4 -12 153 27 5 1509 2219 139 53 31 chr6 121226808 121227224 -28289813 + RMER10A LTR ERVL 1 425 -17 5 1509 872 87 8 0 chr6 121227229 121227356 -28289681 + (TCTCCC)n Simple_repeat Simple_repeat 5 132 0 5 1509 821 182 0 40 chr6 121228364 121228513 -28288524 - B1_Mur1 SINE Alu -1 148 6 5 1509 1531 275 75 70 chr6 121228528 121229166 -28287871 - L1_Mur3 LINE L1 -464 5416 4776 5 1509 767 244 32 6 chr6 121229179 121229388 -28287649 - L1_Mur3 LINE L1 -1962 3918 3707 5 1509 222 244 0 68 chr6 121229446 121229534 -28287503 + (TGAG)n Simple_repeat Simple_repeat 3 84 0 5 1509 403 118 233 52 chr6 121229778 121229894 -28287143 - Lx9 LINE L1 -1 7643 7507 5 1509 3502 157 45 31 chr6 121230166 121230838 -28286199 - Lx9 LINE L1 -165 7479 6799 5 1509 331 292 0 130 chr6 121231375 121231552 -28285485 + MT2B LTR ERVL 114 267 -334 5 1509 710 201 15 0 chr6 121231444 121231578 -28285459 + B1_Mur1 SINE Alu 9 144 -5 5 1509 30 0 0 0 chr6 121232248 121232278 -28284759 + AT_rich Low_complexity Low_complexity 1 30 0 5 1509 202 271 0 0 chr6 121232281 121232329 -28284708 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1509 491 245 39 32 chr6 121232672 121232814 -28284223 - B3A SINE B2 -59 134 2 5 1509 450 156 16 9 chr6 121233041 121233122 -28283915 + MTD LTR MaLR 1 79 -340 5 1509 2128 47 4 0 chr6 121233417 121233795 -28283242 - L1Md_A LINE L1 0 6582 6326 5 1509 195 42 0 0 chr6 121233819 121233843 -28283194 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1509 315 0 0 0 chr6 121233951 121233986 -28283051 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1509 369 0 0 0 chr6 121234189 121234230 -28282807 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1509 188 67 33 0 chr6 121234446 121234476 -28282561 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 5 1509 350 350 48 60 chr6 121234724 121234891 -28282146 - RSINE1 SINE B4 0 165 1 5 1509 278 216 0 0 chr6 121235310 121235361 -28281676 + MER5B DNA MER1_type 3 53 -125 5 1509 257 293 20 29 chr6 121235421 121235523 -28281514 - L1MB7 LINE L1 -11 6173 6073 5 1509 261 0 0 0 chr6 121235523 121235552 -28281485 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1509 212 281 15 30 chr6 121235648 121235714 -28281323 + MER5B DNA MER1_type 112 176 -2 5 1509 763 244 35 11 chr6 121235971 121236145 -28280892 + B3A SINE B2 4 181 -17 5 1509 962 142 0 30 chr6 121236149 121236567 -28280470 + (CA)n Simple_repeat Simple_repeat 1 405 0 5 1509 585 250 35 0 chr6 121236568 121236684 -28280353 - RMER20B LTR ERVK -25 602 483 5 1509 254 65 0 0 chr6 121236685 121236716 -28280321 - L1_Mur2 LINE L1 -1276 4601 4571 5 1509 210 152 356 0 chr6 121236729 121236788 -28280249 + B4 SINE B4 1 80 -212 5 1509 710 157 235 13 chr6 121236742 121236891 -28280146 + B3 SINE B2 35 216 0 5 1509 651 142 0 0 chr6 121236920 121237026 -28280011 - L1_Mur2 LINE L1 -1292 4585 4480 5 1509 21 0 0 0 chr6 121237597 121237618 -28279419 + AT_rich Low_complexity Low_complexity 1 21 0 5 1509 381 198 0 0 chr6 121237766 121237847 -28279190 + CT-rich Low_complexity Low_complexity 4 84 0 5 1509 245 261 71 29 chr6 121237857 121237953 -28279084 - B1F SINE Alu -15 134 43 5 1509 501 17 0 0 chr6 121238349 121238407 -28278630 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1509 850 266 42 103 chr6 121238983 121239482 -28277555 - RLTR11B LTR ERVK -46 481 1 5 1509 474 291 22 7 chr6 121240106 121240241 -28276796 - Arthur1A DNA Tip100 -13 164 28 5 1509 283 336 18 26 chr6 121240317 121240430 -28276607 + MIRb SINE MIR 115 226 -42 5 1509 470 252 0 26 chr6 121241121 121241133 -28275904 - PB1D10 SINE Alu 0 117 107 5 1509 243 79 0 0 chr6 121241133 121241171 -28275866 + (TATG)n Simple_repeat Simple_repeat 2 39 0 5 1509 470 252 0 26 chr6 121241171 121241272 -28275765 - PB1D10 SINE Alu -11 106 7 5 1509 350 269 53 11 chr6 121241198 121241292 -28275745 - B4 SINE B4 -125 167 70 5 1509 183 302 123 0 chr6 121241399 121241505 -28275532 + L3b LINE CR1 13 131 -351 5 188 310 278 83 122 chr6 121241588 121241768 -28275269 + MER5B DNA MER1_type 1 173 -5 5 1510 314 326 56 74 chr6 121241825 121242197 -28274840 - MLT1A1 LTR MaLR -1 373 1 5 1510 295 312 70 44 chr6 121242283 121242397 -28274640 - MER5B DNA MER1_type 0 178 62 5 1510 208 292 29 44 chr6 121242687 121242755 -28274282 - L2b LINE L2 -6 3369 3303 5 1510 22 0 0 0 chr6 121242761 121242783 -28274254 + AT_rich Low_complexity Low_complexity 1 22 0 5 1510 1670 161 128 26 chr6 121242845 121243189 -28273848 + ORR1B1 LTR MaLR 16 394 0 5 1510 5176 146 42 129 chr6 121243188 121244402 -28272635 + ORR1B1-int LTR MaLR 2 1109 -854 5 1510 1351 128 8 17 chr6 121244407 121244654 -28272383 - ORR1A4 LTR MaLR 0 394 132 5 1510 323 50 0 0 chr6 121244622 121244662 -28272375 + ORR1B1 LTR MaLR 290 329 0 5 1510 804 108 45 30 chr6 121244667 121244801 -28272236 - ORR1A3-int LTR MaLR -854 1109 974 5 1510 395 245 37 144 chr6 121245271 121245486 -28271551 + MER90a LTR ERV1 7 198 -377 5 1510 579 191 0 0 chr6 121245503 121245650 -28271387 + (CA)n Simple_repeat Simple_repeat 1 147 0 5 1510 371 93 0 18 chr6 121245650 121245705 -28271332 + HAL1-3A_ME LINE L1 1976 2029 -829 5 1510 490 259 171 11 chr6 121245708 121245895 -28271142 + MER90a LTR ERV1 284 500 -114 5 1510 384 328 102 53 chr6 121246217 121246462 -28270575 + MIRb SINE MIR 2 258 -10 5 1510 370 330 127 50 chr6 121246698 121246998 -28270039 - L1MC4a LINE L1 -14 7868 7546 5 1510 840 317 104 7 chr6 121246998 121247287 -28269750 - MTE2b LTR MaLR 0 379 63 5 1510 825 262 103 15 chr6 121247452 121247793 -28269244 - L1MC4a LINE L1 -551 7331 6961 5 1510 197 220 63 63 chr6 121247941 121248004 -28269033 - L3b LINE CR1 -232 250 188 5 1510 364 339 119 4 chr6 121248527 121248779 -28268258 - Charlie20a DNA Charlie -376 431 151 5 1510 885 248 0 15 chr6 121248942 121249143 -28267894 + B3A SINE B2 1 198 0 5 1510 260 388 26 16 chr6 121249244 121249435 -28267602 - MIRb SINE MIR -63 205 13 5 1510 184 287 148 47 chr6 121250646 121250774 -28266263 - MIRb SINE MIR -113 155 15 5 1510 297 0 0 0 chr6 121251295 121251328 -28265709 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 1510 187 245 82 0 chr6 121251572 121251621 -28265416 + MIRb SINE MIR 171 223 -45 5 1510 244 157 11 53 chr6 121251762 121251856 -28265181 + GA-rich Low_complexity Low_complexity 4 93 0 5 1510 561 339 38 0 chr6 121253089 121253275 -28263762 + MIRb SINE MIR 28 220 -48 5 1510 243 0 0 0 chr6 121253503 121253530 -28263507 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1510 537 294 224 21 chr6 121255797 121256172 -28260865 - L2a LINE L2 -1 3425 2975 5 1510 245 268 26 66 chr6 121256316 121256392 -28260645 - RMER15 LTR ERVL -158 417 345 5 1510 396 286 80 20 chr6 121256554 121256704 -28260333 - L2a LINE L2 -498 2921 2763 5 1510 421 248 186 55 chr6 121256832 121256977 -28260060 + RSINE1 SINE B4 2 165 0 5 1510 1495 214 61 7 chr6 121257004 121257314 -28259723 + MTE2b LTR MaLR 52 378 -1 5 1510 314 299 11 0 chr6 121257634 121257721 -28259316 - L2a LINE L2 -1019 2400 2313 5 1510 435 219 104 0 chr6 121257741 121257837 -28259200 + PB1D10 SINE Alu 1 106 -11 5 1510 315 0 0 0 chr6 121257837 121257872 -28259165 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1510 438 20 0 0 chr6 121257873 121257924 -28259113 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1510 252 0 0 0 chr6 121257924 121257951 -28259086 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1510 1219 284 35 7 chr6 121259296 121259428 -28257609 - L1MA4A LINE L1 -375 5928 5725 5 1510 800 99 7 0 chr6 121259428 121259570 -28257467 + (CA)n Simple_repeat Simple_repeat 2 144 0 5 1510 1219 292 158 53 chr6 121259570 121260575 -28256462 - L1MA4A LINE L1 -123 5724 4604 5 1510 406 285 37 5 chr6 121260915 121261039 -28255998 - PB1D9 SINE Alu -22 125 2 5 1510 289 278 22 73 chr6 121261693 121261715 -28255322 - L1ME2 LINE L1 -216 5946 5926 5 1510 297 0 0 0 chr6 121261715 121261748 -28255289 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1510 349 217 28 39 chr6 121261748 121261861 -28255176 - L1ME2 LINE L1 -237 5925 5818 5 1510 934 276 61 18 chr6 121261881 121262161 -28254876 + B4 SINE B4 1 292 0 5 1510 686 111 0 17 chr6 121262218 121262337 -28254700 + L1Md_F3 LINE L1 6463 6579 -5 5 1510 319 214 39 10 chr6 121262339 121262443 -28254594 - L1M3 LINE L1 -2451 3689 3583 5 1510 353 94 38 0 chr6 121262444 121262497 -28254540 + PB1D9 SINE Alu 1 55 -65 5 1510 358 283 0 21 chr6 121262497 121262591 -28254446 + (CAGAGA)n Simple_repeat Simple_repeat 5 96 0 5 1510 547 97 62 41 chr6 121262595 121262692 -28254345 + B1_Mus2 SINE Alu 40 138 -9 5 1510 597 345 28 22 chr6 121262712 121263035 -28254002 - L1MEc LINE L1 -2550 3769 3445 5 1510 228 149 0 0 chr6 121263069 121263116 -28253921 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1510 443 306 66 100 chr6 121263156 121263457 -28253580 - B4 SINE B4 0 292 2 5 1510 554 279 180 50 chr6 121263483 121263978 -28253059 - L1MEc LINE L1 -2908 3411 2853 5 1510 773 112 0 0 chr6 121264099 121264206 -28252831 - B2_Mm2 SINE B2 -88 107 1 5 1510 446 311 26 77 chr6 121264224 121264537 -28252500 - L1MD LINE L1 -3539 2607 2311 5 1510 390 315 8 59 chr6 121264595 121264713 -28252324 + PB1D10 SINE Alu 6 117 0 5 1510 617 284 83 47 chr6 121264724 121265262 -28251775 - L1MEc LINE L1 -3823 2496 1941 5 1510 938 174 0 0 chr6 121265267 121265416 -28251621 - B1_Mur3 SINE Alu 0 149 1 5 1510 1876 299 38 32 chr6 121265459 121266147 -28250890 - Lx8 LINE L1 0 7473 6782 5 1510 700 162 40 66 chr6 121266162 121266314 -28250723 - B1_Mur1 SINE Alu 0 149 2 5 1510 991 123 14 0 chr6 121266404 121266550 -28250487 - B1_Mus1 SINE Alu 0 148 1 5 1510 349 258 54 8 chr6 121266559 121266688 -28250349 - L1MEc LINE L1 -4513 1887 1753 5 1510 241 314 32 0 chr6 121266768 121266880 -28250157 - L1MC LINE L1 -3707 2439 2325 5 1510 229 121 0 0 chr6 121266953 121266986 -28250051 + B4A SINE B4 88 120 -172 5 1510 329 271 186 72 chr6 121267043 121267333 -28249704 - L1MEc LINE L1 -4696 1704 1382 5 1510 231 298 114 61 chr6 121267324 121267456 -28249581 - L1MEc LINE L1 -5720 680 542 5 1510 328 371 0 0 chr6 121267760 121267849 -28249188 + PB1D10 SINE Alu 21 109 -8 6 1510 526 205 192 56 chr6 121268722 121268913 -28248124 - B3 SINE B2 0 195 1 6 1510 761 252 75 26 chr6 121269031 121269296 -28247741 - L1MD2 LINE L1 -3 6356 6079 6 1510 335 337 29 46 chr6 121269440 121269614 -28247423 - L1MD2 LINE L1 -345 5897 5727 6 1510 864 171 0 0 chr6 121269965 121270094 -28246943 - B1_Mur3 SINE Alu -19 130 2 6 1510 250 250 123 14 chr6 121270238 121270311 -28246726 - ID4_ SINE ID -1 82 2 6 1510 202 150 25 0 chr6 121270369 121270409 -28246628 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 6 1510 444 257 19 0 chr6 121270419 121270524 -28246513 + ID_B1 SINE B4 112 218 -6 6 1510 209 160 40 0 chr6 121270670 121270720 -28246317 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1510 927 92 0 0 chr6 121270732 121270863 -28246174 + (TG)n Simple_repeat Simple_repeat 2 132 0 6 1510 1034 269 11 60 chr6 121270869 121271150 -28245887 - B4 SINE B4 -24 268 2 6 1510 524 281 0 5 chr6 121271221 121271345 -28245692 - PB1D9 SINE Alu -31 119 1 6 1510 277 370 11 0 chr6 121271345 121271383 -28245654 - B4A SINE B4 -207 85 47 6 1510 221 316 12 48 chr6 121271863 121271946 -28245091 + ID4_ SINE ID 1 80 -3 6 1510 2140 184 40 20 chr6 121273113 121273518 -28243519 - MTC LTR MaLR -8 413 1 6 1510 310 189 0 19 chr6 121273563 121273617 -28243420 - RSINE1 SINE B4 -111 54 2 6 1510 198 358 64 35 chr6 121273746 121273917 -28243120 - MIRc SINE MIR -52 216 41 6 1510 510 17 0 0 chr6 121275583 121275642 -28241395 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1510 405 0 0 0 chr6 121275674 121275719 -28241318 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1510 272 333 111 0 chr6 121277874 121277982 -28239055 - MIRb SINE MIR -32 236 117 6 1510 351 0 0 0 chr6 121278181 121278220 -28238817 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1510 462 18 0 0 chr6 121279283 121279338 -28237699 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1510 478 238 11 80 chr6 121279349 121279493 -28237544 - ID_B1 SINE B4 -29 195 66 6 1510 2328 119 11 8 chr6 121280555 121280912 -28236125 + RLTR15 LTR ERVK 2 359 0 6 1510 181 230 53 84 chr6 121281390 121281485 -28235552 - MER5B DNA MER1_type -32 146 55 6 1510 207 79 0 73 chr6 121285375 121285416 -28231621 + A-rich Low_complexity Low_complexity 2 39 0 6 1510 622 159 159 0 chr6 121289066 121289192 -28227845 - B1_Mur1 SINE Alu 0 149 4 6 1510 785 218 7 13 chr6 121289682 121289831 -28227206 - B1F SINE Alu -1 148 1 6 1510 459 0 0 0 chr6 121290703 121290754 -28226283 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 6 1510 1255 131 126 0 chr6 121291412 121291611 -28225426 - URR1A DNA MER1_type -2 224 1 6 1510 238 239 56 14 chr6 121292279 121292351 -28224686 - MIRb SINE MIR -76 192 118 6 1510 1044 169 68 19 chr6 121294449 121294654 -28222383 - B3 SINE B2 0 216 2 6 1510 311 264 39 97 chr6 121294670 121294825 -28222212 + L1MCa LINE L1 1814 1959 -4549 6 1510 831 159 8 0 chr6 121297078 121297337 -28219700 + (TG)n Simple_repeat Simple_repeat 1 261 0 6 1510 183 42 0 0 chr6 121297920 121297944 -28219093 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 6 1510 425 360 85 34 chr6 121298665 121298993 -28218044 + Charlie19a DNA Charlie 5 349 -37 6 1510 1135 201 9 9 chr6 121299623 121299839 -28217198 - B3 SINE B2 0 216 1 6 1510 494 286 169 41 chr6 121299839 121300134 -28216903 + L1MB3 LINE L1 5801 6133 -50 6 1510 261 281 90 0 chr6 121300476 121300565 -28216472 + PB1D10 SINE Alu 21 117 0 6 1510 2971 62 51 10 chr6 121300657 121301048 -28215989 - MTB_Mm LTR MaLR 0 407 1 6 1510 265 191 14 68 chr6 121301278 121301351 -28215686 + MIR SINE MIR 117 185 -77 6 1510 339 305 116 32 chr6 121306029 121306305 -28210732 - ORR1E LTR MaLR -38 332 15 6 1510 558 281 65 17 chr6 121307576 121307638 -28209399 - MER2 DNA MER2_type -62 283 215 6 1510 468 0 0 0 chr6 121307638 121307690 -28209347 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1510 558 281 65 17 chr6 121307690 121307859 -28209178 - MER2 DNA MER2_type -131 214 43 6 1510 336 277 179 21 chr6 121307888 121308028 -28209009 - B4 SINE B4 -86 206 45 6 1510 229 307 17 26 chr6 121308901 121309018 -28208019 + CT-rich Low_complexity Low_complexity 2 117 0 6 1510 233 128 0 21 chr6 121309369 121309417 -28207620 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1510 245 336 9 0 chr6 121309539 121309646 -28207391 + (CA)n Simple_repeat Simple_repeat 1 108 0 6 1510 359 21 21 0 chr6 121309749 121309797 -28207240 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1510 510 314 0 0 chr6 121309993 121310263 -28206774 + (CA)n Simple_repeat Simple_repeat 1 270 0 6 1510 360 0 0 0 chr6 121311240 121311280 -28205757 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1510 405 0 0 0 chr6 121311280 121311324 -28205713 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1510 198 0 0 0 chr6 121311763 121311785 -28205252 + (CAGGG)n Simple_repeat Simple_repeat 1 22 0 6 1510 254 351 41 78 chr6 121314298 121314542 -28202495 - MLT1J LTR MaLR -29 483 249 6 1510 234 282 15 144 chr6 121314686 121314823 -28202214 - MIR SINE MIR -94 182 56 6 1510 278 316 0 0 chr6 121315609 121315688 -28201349 - MIR SINE MIR -56 152 74 6 1510 223 175 25 0 chr6 121315970 121316010 -28201027 + CT-rich Low_complexity Low_complexity 2 42 0 6 1510 791 140 7 0 chr6 121316010 121316153 -28200884 + (TC)n Simple_repeat Simple_repeat 2 145 0 6 1510 465 62 0 0 chr6 121316153 121316218 -28200819 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1510 1191 107 0 0 chr6 121316830 121317008 -28200029 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 6 1510 216 0 0 0 chr6 121317010 121317034 -28200003 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 6 1510 284 187 40 13 chr6 121318327 121318403 -28198634 + PB1D10 SINE Alu 33 110 -7 6 1510 488 321 77 31 chr6 121318434 121318784 -28198253 - L1M5 LINE L1 -2225 3921 3556 6 1510 521 256 0 25 chr6 121319350 121319470 -28197567 - PB1D10 SINE Alu 0 117 1 6 1510 350 223 35 97 chr6 121319741 121319855 -28197182 + MT2B LTR ERVL 151 257 -344 6 1510 879 162 0 0 chr6 121319758 121319900 -28197137 + B1_Mur4 SINE Alu 9 150 0 6 1510 252 222 0 0 chr6 121320116 121320170 -28196867 + G-rich Low_complexity Low_complexity 1 54 0 6 1510 474 322 0 20 chr6 121322227 121322379 -28194658 - B1F1 SINE Alu 0 149 1 6 1510 705 132 0 0 chr6 121324503 121324624 -28192413 + (CA)n Simple_repeat Simple_repeat 2 122 0 6 1510 460 0 33 0 chr6 121327475 121327535 -28189502 + (TCTG)n Simple_repeat Simple_repeat 2 63 0 6 1510 369 0 0 0 chr6 121328563 121328604 -28188433 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1510 204 40 0 0 chr6 121329720 121329745 -28187292 + (GGCTG)n Simple_repeat Simple_repeat 4 28 0 6 1510 206 313 72 0 chr6 121330212 121330295 -28186742 + MIR SINE MIR 34 122 -86 6 1510 254 348 93 19 chr6 121332714 121332919 -28184118 + MIRb SINE MIR 42 261 -7 6 1510 189 308 89 99 chr6 121334632 121334834 -28182203 + L2c LINE L2 3027 3226 -161 6 1510 402 21 0 0 chr6 121334872 121334919 -28182118 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1510 307 315 18 26 chr6 121334996 121335110 -28181927 - L2c LINE L2 -20 3367 3255 6 1510 351 0 0 0 chr6 121335619 121335658 -28181379 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1510 310 378 74 16 chr6 121338268 121338510 -28178527 + L1ME3 LINE L1 5870 6125 -37 6 1510 280 288 12 0 chr6 121338585 121338665 -28178372 + ID4_ SINE ID 3 83 0 6 1510 288 220 107 30 chr6 121338668 121338799 -28178238 + HAL1 LINE L1 2357 2497 -10 6 1510 216 0 0 0 chr6 121338801 121338825 -28178212 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1510 699 234 0 7 chr6 121338828 121338970 -28178067 - B1F SINE Alu -7 142 2 6 1510 246 333 30 0 chr6 121340553 121340619 -28176418 + FLAM_A SINE Alu 2 69 -226 6 1510 1982 115 15 71 chr6 121340752 121341090 -28175947 + ORR1A3 LTR MaLR 1 319 -7 6 1510 347 255 14 47 chr6 121342265 121342413 -28174624 + GA-rich Low_complexity Low_complexity 5 147 0 6 1510 236 343 28 9 chr6 121343114 121343223 -28173814 + MER5A DNA MER1_type 51 161 -28 6 1510 1043 211 11 5 chr6 121343484 121343675 -28173362 - B3 SINE B2 -4 212 21 6 1510 231 280 3 72 chr6 121344579 121344711 -28172326 + MTD LTR MaLR 1 123 -247 6 1510 1348 182 20 24 chr6 121345449 121345696 -28171341 + MTD LTR MaLR 5 250 -169 6 1510 18485 91 15 10 chr6 121345696 121349163 -28167874 + L1_Mus2 LINE L1 3078 6566 0 6 1510 1351 148 4 51 chr6 121349171 121349406 -28167631 + MTD LTR MaLR 196 419 0 6 1510 376 262 36 29 chr6 121349448 121349587 -28167450 + PB1D10 SINE Alu 1 274 -37 6 1510 246 272 107 0 chr6 121350556 121350659 -28166378 - BC1_Mm scRNA scRNA -37 115 2 6 1510 247 330 125 39 chr6 121350725 121350933 -28166104 + L2 LINE L2 1837 2062 -1357 6 1510 222 37 0 0 chr6 121352658 121352685 -28164352 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1510 396 283 29 4 chr6 121353241 121353375 -28163662 - MER5A DNA MER1_type -29 137 2 6 1510 313 345 70 45 chr6 121353407 121353607 -28163430 + MIRb SINE MIR 41 245 -23 6 1510 185 284 112 47 chr6 121353904 121354011 -28163026 + MIR3 SINE MIR 87 200 -8 6 1510 314 321 44 9 chr6 121354091 121354204 -28162833 + MIR SINE MIR 28 144 -118 6 1510 1320 59 0 0 chr6 121354591 121354761 -28162276 + (TCTCC)n Simple_repeat Simple_repeat 1 170 0 6 1510 630 0 0 0 chr6 121354793 121354863 -28162174 + (TTTC)n Simple_repeat Simple_repeat 1 70 0 6 1510 1016 265 64 75 chr6 121356167 121356526 -28160511 - ORR1E LTR MaLR 0 359 5 6 1510 808 257 258 25 chr6 121356527 121356810 -28160227 - MTEa-int LTR MaLR -50 1530 1182 7 1510 1276 290 83 18 chr6 121356830 121357227 -28159810 - MTEa-int LTR MaLR -1157 423 1 7 1510 579 264 66 30 chr6 121357227 121357433 -28159604 - MTEa LTR MaLR 0 379 146 7 1510 195 284 77 51 chr6 121358462 121358540 -28158497 + L2a LINE L2 3345 3424 -2 7 1510 279 289 67 0 chr6 121358710 121358800 -28158237 - MIR3 SINE MIR -22 186 91 7 1510 205 167 0 0 chr6 121359147 121359183 -28157854 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1510 277 316 0 0 chr6 121361228 121361304 -28155733 + MER5C1 DNA MER1_type 118 193 -70 7 1510 181 205 253 60 chr6 121361641 121361724 -28155313 + L2c LINE L2 3288 3386 -1 7 1510 262 222 82 82 chr6 121362033 121362131 -28154906 - RSINE1 SINE B4 -39 126 29 7 1510 272 213 71 50 chr6 121364031 121364130 -28152907 + L1MC5 LINE L1 7831 7931 -30 7 1510 226 349 0 0 chr6 121364215 121364281 -28152756 + L2b LINE L2 3293 3358 -17 7 1510 2572 171 98 71 chr6 121364541 121365159 -28151878 + Lx5 LINE L1 6432 7047 -3 7 1510 267 333 0 36 chr6 121365662 121365746 -28151291 + ID4 SINE ID 1 81 -2 7 1510 451 215 9 35 chr6 121365761 121365892 -28151145 - MLT1E2 LTR MaLR -19 608 364 7 1510 489 296 49 0 chr6 121366101 121366243 -28150794 + MLT1E1 LTR MaLR 2 150 -504 7 1510 387 0 0 0 chr6 121366320 121366363 -28150674 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1510 2024 211 29 17 chr6 121366677 121367091 -28149946 + MTD LTR MaLR 1 419 0 7 1510 4395 139 27 1 chr6 121367428 121368089 -28148948 + RLTR33 LTR ERVK 1 678 0 7 1510 511 291 116 88 chr6 121368095 121368389 -28148648 + ORR1E LTR MaLR 43 344 -15 7 1510 1251 285 170 34 chr6 121368398 121368822 -28148215 + ORR1E-int LTR MaLR 1 503 -1077 7 1510 2565 154 12 16 chr6 121368822 121369245 -28147792 + MTC LTR MaLR 1 421 0 7 1510 1251 299 141 32 chr6 121369245 121369414 -28147623 + ORR1E-int LTR MaLR 504 785 -795 7 1510 1340 300 77 26 chr6 121369460 121369888 -28147149 + ORR1E-int LTR MaLR 956 1405 -175 7 1510 364 239 34 0 chr6 121370041 121370129 -28146908 + ORR1E-int LTR MaLR 1413 1503 -77 7 1510 406 288 73 73 chr6 121370136 121370327 -28146710 + ORR1E LTR MaLR 1 191 -168 7 1510 211 379 11 11 chr6 121370504 121370592 -28146445 + L2b LINE L2 3269 3356 -19 7 1510 210 239 209 9 chr6 121371417 121371527 -28145510 + MIRb SINE MIR 66 197 -71 7 1511 533 15 15 0 chr6 121372753 121372819 -28144218 + (TCC)n Simple_repeat Simple_repeat 1 67 0 7 1511 244 291 58 0 chr6 121373843 121373929 -28143108 - MIR3 SINE MIR -21 187 97 7 1511 248 269 75 0 chr6 121375673 121375740 -28141297 - ID4 SINE ID -2 81 10 7 1511 328 264 66 0 chr6 121375942 121376033 -28141004 - MIR SINE MIR -71 137 41 7 1511 367 358 55 77 chr6 121377237 121377600 -28139437 - L3 LINE CR1 -874 3615 3261 7 1511 237 309 142 64 chr6 121379207 121379386 -28137651 + MIRm SINE MIR 16 211 -57 7 1511 189 94 0 0 chr6 121380333 121380365 -28136672 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1511 223 336 118 0 chr6 121380570 121380689 -28136348 + MIRm SINE MIR 45 177 -99 7 1511 306 292 172 75 chr6 121385451 121385532 -28131505 + ORR1E LTR MaLR 1 83 -276 7 1511 1309 281 73 6 chr6 121385532 121385886 -28131151 + MTE2b LTR MaLR 2 379 0 7 1511 306 307 136 86 chr6 121385886 121386084 -28130953 + ORR1E LTR MaLR 84 287 -83 7 1511 273 337 89 28 chr6 121386898 121387078 -28129959 + ORR1E LTR MaLR 1 191 -168 7 1511 312 70 0 0 chr6 121387351 121387394 -28129643 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1511 233 312 47 0 chr6 121387407 121387471 -28129566 - ID4_ SINE ID -12 71 5 7 1511 184 314 57 23 chr6 121388360 121388448 -28128589 - MIR3 SINE MIR -15 193 103 7 1511 182 171 57 0 chr6 121388506 121388541 -28128496 + MIR SINE MIR 116 152 -110 7 1511 440 290 0 9 chr6 121388694 121388802 -28128235 - PB1D10 SINE Alu -5 112 6 7 1511 465 19 0 0 chr6 121389614 121389668 -28127369 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 7 1511 210 118 0 0 chr6 121390241 121390275 -28126762 + (TCC)n Simple_repeat Simple_repeat 3 36 0 7 1511 198 0 0 0 chr6 121392049 121392071 -28124966 + (CAGC)n Simple_repeat Simple_repeat 2 23 0 7 1511 383 137 14 0 chr6 121393006 121393079 -28123958 + (TG)n Simple_repeat Simple_repeat 1 74 0 7 1511 273 311 38 0 chr6 121393322 121393428 -28123609 - MIR3 SINE MIR -52 156 47 7 1511 364 303 70 10 chr6 121395634 121395734 -28121303 + B1F1 SINE Alu 42 147 -2 7 1511 547 316 52 82 chr6 121395798 121396126 -28120911 + ORR1E LTR MaLR 1 318 -41 7 1511 478 252 70 1 chr6 121396229 121396398 -28120639 + L1MD3 LINE L1 5352 5530 -710 7 1511 1644 192 28 90 chr6 121396715 121397115 -28119922 + MTD LTR MaLR 45 419 0 7 1511 373 222 14 0 chr6 121397608 121397680 -28119357 + B4A SINE B4 1 73 -219 7 1511 249 108 0 0 chr6 121397934 121397971 -28119066 + (GGA)n Simple_repeat Simple_repeat 2 38 0 7 1511 228 111 0 0 chr6 121398018 121398054 -28118983 + (GGA)n Simple_repeat Simple_repeat 2 37 0 7 1511 476 256 115 42 chr6 121399034 121399295 -28117742 + L1MD3 LINE L1 7515 7794 -201 7 1511 511 293 77 68 chr6 121399577 121399914 -28117123 + ORR1E LTR MaLR 20 359 0 7 1511 180 315 104 35 chr6 121400506 121400621 -28116416 + MIRb SINE MIR 88 210 -58 7 1511 553 275 171 25 chr6 121400676 121401038 -28115999 + L1ME1 LINE L1 5486 5900 -279 7 1511 485 325 6 13 chr6 121401061 121401239 -28115798 + L1ME1 LINE L1 6008 6179 0 7 1511 3607 20 0 0 chr6 121402282 121402678 -28114359 + MTA_Mm LTR MaLR 1 396 0 7 1511 333 0 0 0 chr6 121402780 121402817 -28114220 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1511 327 349 14 72 chr6 121402824 121402858 -28114179 + B1F SINE Alu 11 43 -106 7 1511 920 144 207 5 chr6 121402858 121403046 -28113991 - URR1A DNA MER1_type 0 226 1 7 1511 327 349 14 72 chr6 121403046 121403150 -28113887 + B1F SINE Alu 44 141 -8 7 1511 333 0 0 0 chr6 121403564 121403601 -28113436 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1511 317 338 42 21 chr6 121404513 121404655 -28112382 + MLT1G1 LTR MaLR 352 496 -83 7 1511 336 24 0 0 chr6 121405244 121405285 -28111752 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1511 498 217 0 0 chr6 121406470 121406585 -28110452 + (CA)n Simple_repeat Simple_repeat 1 115 0 7 1511 257 357 85 10 chr6 121406984 121407185 -28109852 + MIR SINE MIR 26 241 -21 7 1511 194 175 25 0 chr6 121407554 121407594 -28109443 + L2b LINE L2 3117 3157 -218 7 1511 222 196 0 97 chr6 121407687 121407749 -28109288 + L2b LINE L2 3300 3355 -20 7 1511 383 303 61 31 chr6 121408639 121408867 -28108170 - L1MC5 LINE L1 -188 7773 7539 7 1511 210 299 250 6 chr6 121409821 121409989 -28107048 + L2 LINE L2 2663 2871 -548 7 1511 1283 213 70 86 chr6 121410273 121410658 -28106379 + MTE2a LTR MaLR 1 379 0 7 1511 321 26 0 0 chr6 121411315 121411353 -28105684 + (TATG)n Simple_repeat Simple_repeat 1 38 0 7 1511 255 186 0 0 chr6 121412010 121412053 -28104984 + L3 LINE CR1 4156 4198 -291 7 1511 502 211 0 22 chr6 121412461 121412597 -28104440 + G-rich Low_complexity Low_complexity 6 138 0 7 1511 24 0 0 0 chr6 121413012 121413036 -28104001 + GC_rich Low_complexity Low_complexity 1 24 0 7 1511 405 58 0 0 chr6 121413831 121413883 -28103154 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1511 317 185 37 9 chr6 121414464 121414573 -28102464 + GA-rich Low_complexity Low_complexity 3 114 0 7 1511 343 204 58 10 chr6 121416278 121416382 -28100655 + Lx5 LINE L1 6942 7050 0 7 1511 306 293 105 20 chr6 121416389 121416542 -28100495 + MIR3 SINE MIR 35 200 -8 7 1511 540 0 0 0 chr6 121416789 121416849 -28100188 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1511 222 236 0 35 chr6 121418314 121418371 -28098666 + C-rich Low_complexity Low_complexity 5 59 0 7 1511 293 286 0 0 chr6 121419482 121419545 -28097492 + tRNA-Ala-GCY_ tRNA tRNA 1 63 -12 7 1511 274 296 24 12 chr6 121419545 121419557 -28097480 + ID4 SINE ID 26 83 0 7 1511 233 320 31 10 chr6 121419557 121419573 -28097464 + ID_B1 SINE B4 1 100 -124 7 1511 224 270 0 39 chr6 121419576 121419653 -28097384 + GA-rich Low_complexity Low_complexity 3 76 0 7 1511 495 0 0 0 chr6 121420333 121420388 -28096649 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1511 206 312 0 0 chr6 121424567 121424615 -28092422 - L2b LINE L2 -206 3169 3122 7 1511 449 327 99 42 chr6 121424795 121425197 -28091840 - L1ME2 LINE L1 -6 6158 5734 7 1511 324 0 0 0 chr6 121425280 121425316 -28091721 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1511 230 229 43 78 chr6 121426140 121426301 -28090736 + L1MEc LINE L1 1056 1221 -5194 7 1511 300 257 142 100 chr6 121426335 121426616 -28090421 - L1MD LINE L1 -2945 3201 2909 7 1511 270 0 0 0 chr6 121426748 121426778 -28090259 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1511 459 0 0 0 chr6 121426778 121426828 -28090209 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 1511 1001 93 13 0 chr6 121427512 121427662 -28089375 + (GAAA)n Simple_repeat Simple_repeat 4 155 0 7 1511 1809 229 21 60 chr6 121427994 121428430 -28088607 - MTD LTR MaLR 0 419 1 7 1511 1155 52 17 0 chr6 121428936 121429108 -28087929 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 7 1511 1319 6 0 62 chr6 121429124 121429316 -28087721 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1511 239 257 0 136 chr6 121429316 121429397 -28087640 - ID4 SINE ID -11 72 3 7 1511 208 225 27 27 chr6 121430345 121430441 -28086596 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 7 1511 1274 287 45 62 chr6 121430501 121431080 -28085957 + Lx8 LINE L1 6727 7295 -178 7 1511 949 272 107 62 chr6 121431279 121431635 -28085402 + MTE2b LTR MaLR 1 372 -7 7 1511 181 204 22 22 chr6 121432246 121432291 -28084746 + MIRm SINE MIR 130 174 -102 7 1511 249 307 127 51 chr6 121432323 121432481 -28084556 - MIRc SINE MIR -43 225 56 7 1511 276 38 56 19 chr6 121432482 121432536 -28084501 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 7 1511 271 333 32 11 chr6 121432654 121432748 -28084289 + ORR1E LTR MaLR 41 136 -223 7 1511 212 329 51 0 chr6 121432927 121432958 -28084079 + ID_B1 SINE B4 60 142 -82 7 1511 244 229 21 0 chr6 121432958 121433006 -28084031 + PB1D7 SINE Alu 13 61 -59 7 1511 840 186 0 0 chr6 121433021 121433188 -28083849 + GA-rich Low_complexity Low_complexity 3 169 0 7 1511 251 310 95 35 chr6 121433464 121433609 -28083428 - MIRc SINE MIR -74 188 35 8 1511 425 139 35 0 chr6 121434424 121434510 -28082527 - L1Md_F2 LINE L1 0 6582 6494 8 1511 793 295 119 57 chr6 121434747 121435236 -28081801 - Lx8 LINE L1 -2 7471 6953 8 1511 254 280 0 13 chr6 121435244 121435320 -28081717 + CT-rich Low_complexity Low_complexity 1 75 0 8 1511 1408 237 62 15 chr6 121435320 121435692 -28081345 - Lx8 LINE L1 -828 6645 6255 8 1511 930 19 0 0 chr6 121435692 121435800 -28081237 + (CAAAC)n Simple_repeat Simple_repeat 3 110 0 8 1511 1408 237 62 15 chr6 121435800 121435829 -28081208 - Lx8 LINE L1 -1219 6254 6226 8 1511 199 194 159 29 chr6 121436076 121436145 -28080892 + L3 LINE CR1 149 226 -4263 8 1511 327 266 163 0 chr6 121436489 121436614 -28080423 + MIR SINE MIR 2 154 -54 8 1511 510 17 0 0 chr6 121437345 121437404 -28079633 + (TC)n Simple_repeat Simple_repeat 1 59 0 8 1511 735 84 66 0 chr6 121437404 121437571 -28079466 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 8 1511 1484 69 16 0 chr6 121437612 121437800 -28079237 - B2_Mm2 SINE B2 -4 191 1 8 1511 456 19 0 0 chr6 121437811 121437864 -28079173 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 8 1511 259 259 141 0 chr6 121437867 121437952 -28079085 + Lx8 LINE L1 6185 6281 -1192 8 1511 663 287 106 22 chr6 121437935 121438256 -28078781 + Lx8 LINE L1 7121 7468 -5 8 1511 606 184 0 16 chr6 121438337 121438519 -28078518 + CT-rich Low_complexity Low_complexity 2 180 0 8 1511 253 291 83 60 chr6 121438618 121438702 -28078335 + B4 SINE B4 44 129 -163 8 1511 457 224 133 0 chr6 121438663 121438761 -28078276 + PB1D10 SINE Alu 6 116 -1 8 1511 980 328 93 30 chr6 121438893 121439365 -28077672 + MER45B DNA Tip100 29 530 -510 8 1511 506 266 53 9 chr6 121439465 121439579 -28077458 - B1F1 SINE Alu -30 119 1 8 1511 612 259 25 12 chr6 121439876 121440036 -28077001 + Tigger1 DNA MER2_type 2256 2417 -1 8 1511 909 281 42 26 chr6 121440041 121440348 -28076689 + MER45B DNA Tip100 513 824 -216 8 1511 227 271 43 0 chr6 121440362 121440432 -28076605 + GA-rich Low_complexity Low_complexity 4 76 0 8 1511 996 148 0 0 chr6 121440432 121440601 -28076436 + (GGAGAA)n Simple_repeat Simple_repeat 5 173 0 8 1511 750 318 58 43 chr6 121440693 121441041 -28075996 - L2b LINE L2 -51 3324 2972 8 1511 216 296 157 52 chr6 121441090 121441243 -28075794 - L2b LINE L2 -559 2860 2692 8 1511 990 318 72 6 chr6 121441591 121442078 -28074959 + L1ME2 LINE L1 5327 5845 -319 8 1511 309 198 77 55 chr6 121442516 121442607 -28074430 + L1MD3 LINE L1 5925 6017 -1978 8 1511 998 129 5 166 chr6 121442640 121442863 -28074174 - RMER4A LTR ERVK -4 462 276 8 1511 282 328 50 16 chr6 121443018 121443139 -28073898 - MIRc SINE MIR -112 156 32 8 1511 1152 89 0 0 chr6 121443797 121443943 -28073094 + B1_Mus1 SINE Alu 2 147 -1 8 1511 561 217 9 0 chr6 121444645 121444751 -28072286 - MIRb SINE MIR -79 189 83 8 1511 1223 223 164 36 chr6 121445481 121445811 -28071226 - MTE2b LTR MaLR 0 379 8 8 1511 976 248 119 102 chr6 121445956 121446436 -28070601 - MLT1F-int LTR MaLR -821 668 181 8 1511 851 306 28 58 chr6 121446524 121446888 -28070149 + ORR1E LTR MaLR 1 353 -6 8 1511 319 206 27 14 chr6 121446925 121446999 -28070038 + PB1D10 SINE Alu 35 109 -8 8 1511 455 226 83 49 chr6 121447090 121447234 -28069803 - MLT1E1A LTR MaLR -8 672 524 8 1511 499 284 79 0 chr6 121447318 121447445 -28069592 + B1F SINE Alu 12 148 -1 8 1511 1142 251 33 81 chr6 121447566 121447931 -28069106 + MTEa LTR MaLR 1 378 -1 8 1511 980 294 82 21 chr6 121448226 121448653 -28068384 - Charlie5 DNA MER1_type -1 2623 2171 8 1511 210 342 51 0 chr6 121450305 121450384 -28066653 + PB1 SINE Alu 45 127 0 8 1511 532 198 0 65 chr6 121450389 121450513 -28066524 + PB1D9 SINE Alu 3 118 -2 8 1511 214 264 19 0 chr6 121450522 121450575 -28066462 + GA-rich Low_complexity Low_complexity 1 54 0 8 1511 335 298 53 0 chr6 121451381 121451495 -28065542 + MLT1J1 LTR MaLR 42 161 -283 8 1511 3925 160 124 61 chr6 121452102 121452949 -28064088 - RMER19B LTR ERVK 0 902 3 8 1511 1113 237 181 12 chr6 121453152 121453472 -28063565 - MTE2a LTR MaLR -5 374 1 8 1511 2661 48 0 0 chr6 121454926 121455237 -28061800 + RLTR10E LTR ERVK 1 311 0 8 1511 363 138 77 0 chr6 121455391 121455456 -28061581 - RSINE1 SINE B4 -41 124 55 8 1511 22 0 0 0 chr6 121455748 121455770 -28061267 + AT_rich Low_complexity Low_complexity 1 22 0 8 1511 1660 42 0 0 chr6 121455898 121456091 -28060946 - B2_Mm1a SINE B2 0 193 1 8 1511 960 126 0 0 chr6 121456598 121456772 -28060265 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 8 1511 1151 245 62 79 chr6 121456856 121457211 -28059826 - MTEa LTR MaLR -3 376 28 8 1511 228 135 0 0 chr6 121458276 121458313 -28058724 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1511 1211 267 105 3 chr6 121458373 121458715 -28058322 + MTE2a LTR MaLR 1 377 -2 8 1511 393 22 0 0 chr6 121461221 121461267 -28055770 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1511 200 264 19 0 chr6 121461953 121462006 -28055031 - MIR SINE MIR -189 73 20 8 1511 281 335 128 26 chr6 121462414 121462570 -28054467 - ORR1E LTR MaLR -122 237 66 8 1511 1939 167 11 11 chr6 121462990 121463347 -28053690 - RLTR15 LTR ERVK 0 359 3 8 1511 442 296 148 15 chr6 121463507 121463709 -28053328 + MIR SINE MIR 33 261 -1 8 1511 6201 185 46 42 chr6 121464518 121465093 -28051944 + Lx2B LINE L1 5652 6196 -804 8 1511 3451 28 8 0 chr6 121465093 121465486 -28051551 - MTA_Mm LTR MaLR 0 396 1 8 1511 6201 185 46 42 chr6 121465486 121466253 -28050784 + Lx2B LINE L1 6197 7000 0 8 1511 248 317 30 0 chr6 121466394 121466495 -28050542 + CT-rich Low_complexity Low_complexity 2 105 0 8 1511 247 333 102 51 chr6 121468150 121468346 -28048691 - L3 LINE CR1 -630 3859 3654 8 1511 186 189 75 0 chr6 121469570 121469623 -28047414 - L2a LINE L2 -25 3401 3345 8 1511 351 0 0 0 chr6 121470933 121470972 -28046065 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1511 1926 179 24 45 chr6 121472599 121472974 -28044063 - RLTR14 LTR ERV1 0 382 16 8 1511 3063 126 12 35 chr6 121473067 121473553 -28043484 + MT2C_Mm LTR ERVL 1 475 0 8 1511 3026 60 35 25 chr6 121473560 121473955 -28043082 + MTB LTR MaLR 2 400 0 8 1511 1431 138 4 22 chr6 121475721 121475950 -28041087 - URR1B DNA MER1_type 0 225 1 8 1511 2344 86 41 0 chr6 121475993 121476307 -28040730 - ORR1A2 LTR MaLR 0 327 1 8 1511 645 105 0 0 chr6 121478031 121478126 -28038911 + (TTCC)n Simple_repeat Simple_repeat 3 97 0 8 1511 1303 95 15 45 chr6 121478126 121478324 -28038713 - B2_Mm2 SINE B2 0 195 4 8 1511 2992 76 2 7 chr6 121479230 121479642 -28037395 - BGLII LTR ERVK 0 421 12 8 1511 325 300 78 0 chr6 121480090 121480224 -28036813 + B1F SINE Alu 3 147 -2 8 1511 853 264 78 8 chr6 121480455 121480711 -28036326 + B4 SINE B4 1 274 -18 8 1511 406 157 57 0 chr6 121481345 121481485 -28035552 + (TA)n Simple_repeat Simple_repeat 2 149 0 8 1511 189 107 0 0 chr6 121481666 121481694 -28035343 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 8 1511 1124 88 0 0 chr6 121481694 121481842 -28035195 - B1_Mus1 SINE Alu 0 148 1 8 1511 207 179 0 0 chr6 121482342 121482381 -28034656 + G-rich Low_complexity Low_complexity 3 41 0 8 1511 646 322 75 31 chr6 121483491 121484031 -28033006 - L1MA4 LINE L1 -369 5931 5285 8 1511 1211 48 0 7 chr6 121484031 121484179 -28032858 - B1_Mus1 SINE Alu -1 147 1 8 1511 1209 292 129 29 chr6 121484179 121484925 -28032112 - L1MA4 LINE L1 -827 5316 4495 8 1511 342 0 0 0 chr6 121485323 121485361 -28031676 + (CAA)n Simple_repeat Simple_repeat 2 39 0 8 1511 1630 190 85 30 chr6 121485448 121485811 -28031226 + ORR1C2 LTR MaLR 2 384 0 8 1511 203 149 0 41 chr6 121486073 121486122 -28030915 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 1511 2908 291 91 35 chr6 121486213 121487975 -28029062 + L1_Mur3 LINE L1 1551 3410 -2470 8 1511 1037 270 105 29 chr6 121489053 121489537 -28027500 + L1_Mur3 LINE L1 3462 3982 -1898 8 1511 296 186 0 0 chr6 121489641 121489700 -28027337 + tRNA-Ala-GCA tRNA tRNA 2 60 -15 8 1511 403 284 113 0 chr6 121490208 121490349 -28026688 - MLT1A0 LTR MaLR -25 340 184 8 1511 406 322 113 43 chr6 121490533 121490564 -28026473 - MLT2D LTR ERVL -12 402 364 8 1511 486 0 0 0 chr6 121490564 121490618 -28026419 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1511 406 322 113 43 chr6 121490618 121490822 -28026215 - MLT2D LTR ERVL -51 363 150 8 1511 962 258 125 41 chr6 121490822 121491104 -28025933 + MTEa LTR MaLR 1 312 -67 8 1511 606 28 0 0 chr6 121491104 121491176 -28025861 + (TCCC)n Simple_repeat Simple_repeat 2 73 0 8 1511 3206 129 18 22 chr6 121491176 121491674 -28025363 + RLTR19 LTR ERVK 1 496 -3 8 1511 962 258 125 41 chr6 121491674 121491733 -28025304 + MTEa LTR MaLR 313 371 -8 8 1511 345 308 31 0 chr6 121491748 121491878 -28025159 - MLT2D LTR ERVL -280 134 1 8 1511 367 386 40 20 chr6 121491913 121492114 -28024923 - MLT1J LTR MaLR -136 376 172 8 1511 280 256 134 0 chr6 121492097 121492179 -28024858 + RSINE1 SINE B4 27 119 -46 8 1511 1303 162 0 19 chr6 121492488 121492696 -28024341 - MTC LTR MaLR -161 260 57 8 1511 441 0 0 0 chr6 121492719 121492768 -28024269 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1511 510 17 0 0 chr6 121492768 121492826 -28024211 + (GA)n Simple_repeat Simple_repeat 2 60 0 8 1511 22430 77 2 5 chr6 121493467 121497236 -28019801 - L1Md_Gf LINE L1 -1703 4183 330 8 1511 27 29 0 0 chr6 121497473 121497507 -28019530 + AT_rich Low_complexity Low_complexity 1 34 0 8 1511 228 182 18 0 chr6 121497600 121497655 -28019382 + CT-rich Low_complexity Low_complexity 1 56 0 8 1511 590 117 22 55 chr6 121497659 121497840 -28019197 + (TCTCTG)n Simple_repeat Simple_repeat 2 176 0 8 1511 5338 219 40 41 chr6 121497859 121500000 -28017037 - Lx5 LINE L1 0 7050 4905 8 1511 2823 147 62 2 chr6 121500006 121500167 -28016870 - L1_Mur2 LINE L1 -979 4898 4716 1 1511 183 80 0 0 chr6 121500167 121500192 -28016845 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2 1511 2823 147 62 2 chr6 121500192 121500515 -28016522 - L1_Mur2 LINE L1 -1162 4715 4385 1 1511 4193 146 50 41 chr6 121500517 121501323 -28015714 + L1_Mur3 LINE L1 3352 4164 -1716 3 1511 5268 92 26 4 chr6 121501323 121502080 -28014957 + RMER12 LTR ERVK 1 774 -548 4 1511 273 29 0 0 chr6 121502080 121502114 -28014923 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1511 294 205 47 24 chr6 121502114 121502160 -28014877 + RMER12B LTR ERVK 1259 1304 -100 6 1511 284 271 32 56 chr6 121502356 121502481 -28014556 - MLT2F LTR ERVL -537 126 5 7 1511 2731 129 42 26 chr6 121503126 121503580 -28013457 + RMER6B LTR ERVK 1 461 0 8 1512 252 0 0 0 chr6 121503936 121503964 -28013073 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1512 1208 147 54 0 chr6 121504362 121504566 -28012471 + MTC LTR MaLR 26 240 -181 1 1512 477 0 0 0 chr6 121504573 121504626 -28012411 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1512 399 123 0 0 chr6 121504627 121504708 -28012329 + (CAGA)n Simple_repeat Simple_repeat 2 82 0 1 1512 516 32 0 0 chr6 121504710 121504772 -28012265 + (CCA)n Simple_repeat Simple_repeat 1 62 0 1 1512 586 195 114 0 chr6 121504772 121504895 -28012142 + MTC LTR MaLR 251 387 -32 1 1512 1298 290 109 12 chr6 121505661 121506565 -28010472 - L1MA4 LINE L1 -337 5975 4942 1 1512 342 0 0 0 chr6 121507142 121507180 -28009857 + (TGG)n Simple_repeat Simple_repeat 1 38 0 1 1512 262 247 12 24 chr6 121508030 121508113 -28008924 + RodERV21-int LTR ERV1 1627 1708 -3283 1 1512 2691 134 103 49 chr6 121508779 121509272 -28007765 - RLTR28 LTR ERVL -4 520 1 1 1512 1336 239 66 15 chr6 121509875 121510210 -28006827 + ORR1E LTR MaLR 1 352 -7 1 1512 448 111 25 0 chr6 121511486 121511567 -28005470 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 1512 493 214 76 8 chr6 121511998 121512116 -28004921 - L1_Mur2 LINE L1 -283 5594 5469 2 1512 2372 224 94 38 chr6 121512125 121512734 -28004303 + Lx6 LINE L1 6814 7456 -4 2 1512 348 279 19 37 chr6 121512841 121512949 -28004088 - PB1D10 SINE Alu -2 115 10 2 1512 309 273 43 52 chr6 121513090 121513206 -28003831 + L1MA5 LINE L1 6182 6297 0 2 1512 2248 68 18 58 chr6 121513210 121513539 -28003498 + ORR1A3 LTR MaLR 3 318 -8 2 1512 1028 158 206 5 chr6 121514016 121514200 -28002837 + URR1A DNA MER1_type 5 225 -1 2 1512 901 214 56 19 chr6 121514873 121515087 -28001950 + RLTR42-int LTR ERVK 1129 1350 -4172 2 1512 289 247 12 24 chr6 121515229 121515312 -28001725 + RLTR19-int LTR ERVK 896 977 -5160 2 1512 404 149 0 29 chr6 121515325 121515394 -28001643 + RLTR19-int LTR ERVK 1545 1611 -3911 2 1512 233 29 29 0 chr6 121515613 121515647 -28001390 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 2 1512 5902 35 0 1 chr6 121515749 121516408 -28000629 - L1Md_T LINE L1 0 6582 5925 2 1512 288 0 0 0 chr6 121516742 121516774 -28000263 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1512 21 0 0 0 chr6 121517041 121517062 -27999975 + AT_rich Low_complexity Low_complexity 1 21 0 3 1512 459 0 0 0 chr6 121517197 121517248 -27999789 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3 1512 885 271 92 88 chr6 121517301 121517891 -27999146 + RLTR19-int LTR ERVK 2183 2774 -3363 2 1512 196 222 91 65 chr6 121518126 121518203 -27998834 - L4 LINE RTE -786 1243 1165 3 1512 263 222 51 77 chr6 121518395 121518512 -27998525 + RLTR19-int LTR ERVK 2786 2899 -3238 2 1512 463 149 96 104 chr6 121518585 121518720 -27998317 + RLTR19-int LTR ERVK 2904 3037 -3100 2 1512 25 0 0 0 chr6 121518969 121518994 -27998043 + AT_rich Low_complexity Low_complexity 1 25 0 3 1512 2281 231 72 110 chr6 121519006 121519579 -27997458 + RLTR19-int LTR ERVK 3513 4059 -2078 2 1512 2465 96 43 75 chr6 121519579 121519950 -27997087 + RLTR10D LTR ERVK 1 359 0 3 1512 2281 231 72 110 chr6 121519950 121520374 -27996663 + RLTR19-int LTR ERVK 4060 4472 -1665 2 1512 2771 75 0 0 chr6 121520680 121521012 -27996025 + IAPEY3_LTR LTR ERVK 1 332 0 3 1512 1690 92 8 42 chr6 121521012 121521273 -27995764 + IAPLTR4_I LTR ERVK 22 273 -1197 3 1512 14641 87 21 1 chr6 121521272 121523234 -27993803 + IAPEY3-int LTR ERVK 497 2497 -5183 3 1512 2239 49 0 0 chr6 121523229 121523492 -27993545 + IAPEY3-int LTR ERVK 4783 5045 -2635 3 1512 737 99 10 0 chr6 121523484 121523585 -27993452 + IAPEY3-int LTR ERVK 3186 3287 -4393 3 1512 5733 63 56 0 chr6 121523586 121524317 -27992720 + IAPEY3-int LTR ERVK 6909 7680 0 3 1512 2717 95 17 0 chr6 121524317 121524665 -27992372 + IAPEY2_LTR LTR ERVK 1 354 -3 3 1512 1320 41 0 0 chr6 121525722 121525868 -27991169 + B1_Mm SINE Alu 2 147 0 3 1512 866 175 19 87 chr6 121526356 121526563 -27990474 + B2_Mm2 SINE B2 3 195 0 4 1512 856 260 110 16 chr6 121526617 121526871 -27990166 - MTEa LTR MaLR -24 355 78 4 1512 376 86 14 14 chr6 121527037 121527108 -27989929 + (CAA)n Simple_repeat Simple_repeat 2 72 0 4 1512 1474 87 5 5 chr6 121527171 121527357 -27989680 + B2_Mm2 SINE B2 1 186 -9 4 1512 2819 123 63 16 chr6 121527379 121527826 -27989211 + RLTR19-int LTR ERVK 3509 3976 -2161 4 1512 268 263 48 63 chr6 121528280 121528406 -27988631 + IAP-d-int LTR ERVK 6396 6519 -23 4 1512 8133 69 10 6 chr6 121528777 121528822 -27988215 - L1_Mus3 LINE L1 -7 6631 6592 4 1512 3685 30 0 0 chr6 121528822 121529218 -27987819 - MTA_Mm LTR MaLR 0 396 1 4 1512 8133 74 16 5 chr6 121529218 121530320 -27986717 - L1_Mus3 LINE L1 -47 6591 5450 4 1512 192 77 0 0 chr6 121530422 121530448 -27986589 + (CATA)n Simple_repeat Simple_repeat 3 28 0 4 1512 230 259 32 57 chr6 121530615 121530738 -27986299 - L1M1 LINE L1 -391 5912 5793 4 1512 32809 91 13 2 chr6 121530743 121536810 -27980227 + L1_Mus1 LINE L1 409 6547 -20 5 1512 10445 131 52 16 chr6 121536819 121538562 -27978475 - MurERV4-int LTR ERVK -559 4701 2897 5 1512 10256 69 3 10 chr6 121538563 121538632 -27978405 - L1_Mm LINE L1 -521 5362 5294 5 1512 1681 22 22 0 chr6 121538632 121538816 -27978221 - B2_Mm1a SINE B2 -4 189 2 5 1512 10256 69 3 10 chr6 121538816 121540099 -27976938 - L1_Mm LINE L1 -590 5293 4020 5 1512 709 329 35 58 chr6 121540576 121540969 -27976068 - RLTR18B LTR ERVK -10 502 134 5 1512 572 313 40 24 chr6 121540970 121541219 -27975818 - RLTR18 LTR ERVK -359 257 5 5 1512 3688 170 30 5 chr6 121541223 121541884 -27975153 - RLTR18-int LTR ERVK 0 5361 4684 5 1512 24 0 0 0 chr6 121542230 121542254 -27974783 + AT_rich Low_complexity Low_complexity 1 24 0 5 1512 867 186 51 5 chr6 121542461 121542656 -27974381 - RLTR18-int LTR ERVK -1981 3380 3177 5 1512 960 176 82 0 chr6 121542650 121542832 -27974205 - RLTR18-int LTR ERVK -2359 3002 2806 5 1512 781 172 72 85 chr6 121542830 121543053 -27973984 - RLTR18-int LTR ERVK -2686 2675 2456 5 1512 613 129 17 0 chr6 121543382 121543498 -27973539 + (TC)n Simple_repeat Simple_repeat 1 118 0 5 1512 1375 206 75 73 chr6 121543563 121544003 -27973034 - RLTR20B3 LTR ERVK -128 449 9 5 1512 401 181 0 27 chr6 121544068 121544142 -27972895 - RLTR18-int LTR ERVK -5287 74 3 5 1512 530 292 85 78 chr6 121544192 121544641 -27972396 - RLTR18 LTR ERVK -20 596 121 5 1512 427 294 51 20 chr6 121544656 121544842 -27972195 - RLTR18B LTR ERVK -423 193 3 5 1512 593 181 19 9 chr6 121545254 121545360 -27971677 - B1_Mur1 SINE Alu -9 140 34 6 1512 535 273 0 64 chr6 121545305 121545475 -27971562 + RMER15 LTR ERVL 359 517 -58 6 1512 7589 124 165 10 chr6 121545475 121545719 -27971318 - RLTR21 LTR ERVK -2 1570 1310 6 1512 522 0 0 0 chr6 121545719 121545777 -27971260 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1512 7589 124 165 10 chr6 121545777 121545847 -27971190 - RLTR21 LTR ERVK -263 1309 1095 6 1512 743 102 17 0 chr6 121545847 121545965 -27971072 + (CATA)n Simple_repeat Simple_repeat 3 122 0 6 1512 7589 124 165 10 chr6 121545965 121547008 -27970029 - RLTR21 LTR ERVK -478 1094 2 6 1512 7935 114 21 20 chr6 121548007 121549179 -27967858 + Lx2 LINE L1 5816 6989 -8 6 1512 302 322 46 0 chr6 121549272 121549359 -27967678 + PB1D7 SINE Alu 1 91 -29 6 1512 378 294 3 0 chr6 121549398 121549713 -27967324 + (CA)n Simple_repeat Simple_repeat 1 316 0 6 1512 1594 108 22 0 chr6 121550161 121550392 -27966645 - L1_Mus3 LINE L1 -5 6633 6398 6 1512 232 0 24 73 chr6 121550405 121550446 -27966591 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1512 959 87 0 0 chr6 121551677 121551804 -27965233 - B1_Mus1 SINE Alu -21 127 1 7 1512 456 226 14 86 chr6 121551683 121551823 -27965214 - MT2B LTR ERVL -325 276 147 7 1512 267 277 0 15 chr6 121551805 121551871 -27965166 - RMER5 LTR ERV1 -45 489 425 7 1512 790 323 82 43 chr6 121551873 121552089 -27964948 - RMER5 LTR ERV1 -61 473 260 7 1512 540 45 0 0 chr6 121552089 121552156 -27964881 + (TC)n Simple_repeat Simple_repeat 1 67 0 7 1512 790 323 82 43 chr6 121552156 121552356 -27964681 - RMER5 LTR ERV1 -275 259 41 7 1512 288 0 0 0 chr6 121553484 121553516 -27963521 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1512 3831 171 31 19 chr6 121553567 121553848 -27963189 + L1_Mur3 LINE L1 1765 2057 -3823 7 1512 528 30 0 0 chr6 121553848 121553914 -27963123 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1512 3831 171 31 19 chr6 121553914 121554364 -27962673 + L1_Mur3 LINE L1 2058 2505 -3375 7 1512 1916 164 67 3 chr6 121554364 121554706 -27962331 + ORR1B1 LTR MaLR 1 364 -30 7 1512 523 271 21 8 chr6 121555037 121555188 -27961849 - RMER20B LTR ERVK -359 157 1 7 1512 268 81 0 0 chr6 121555188 121555225 -27961812 + ORR1B1 LTR MaLR 331 367 0 7 1512 510 96 27 0 chr6 121555229 121555302 -27961735 + L1_Mur3 LINE L1 2501 2575 -3305 7 1512 683 128 8 8 chr6 121555299 121555417 -27961620 + L1_Mur3 LINE L1 2692 2809 -3071 7 1512 4641 231 31 16 chr6 121555451 121556438 -27960599 + Lx5 LINE L1 6049 7050 0 8 1512 590 186 0 8 chr6 121556525 121556619 -27960418 + B1_Mur2 SINE Alu 2 89 -31 8 1512 480 314 172 29 chr6 121556619 121557059 -27959978 + RMER20B LTR ERVK 1 516 0 8 1512 302 131 0 116 chr6 121557059 121557127 -27959910 + B1_Mus2 SINE Alu 90 149 0 8 1512 286 254 67 22 chr6 121557129 121557317 -27959720 - L1MEe LINE L1 -3607 2539 2340 8 1512 251 298 18 0 chr6 121557323 121557380 -27959657 - PB1 SINE Alu -9 118 61 8 1512 3007 180 6 87 chr6 121557633 121558278 -27958759 - RMER20B LTR ERVK 0 627 35 8 1512 295 243 55 18 chr6 121558279 121558388 -27958649 + L1_Rod LINE L1 1226 1338 -4509 8 1512 797 273 62 7 chr6 121558419 121558707 -27958330 + L1_Mur3 LINE L1 1480 1783 -4097 8 1512 395 333 8 0 chr6 121558732 121558858 -27958179 - MTD LTR MaLR -290 129 3 8 1512 603 255 65 26 chr6 121559086 121559239 -27957798 + RSINE1 SINE B4 3 161 -4 9 1512 484 288 183 44 chr6 121559575 121559826 -27957211 - MER2 DNA MER2_type -29 316 31 9 1512 374 259 0 0 chr6 121560893 121560978 -27956059 + ID SINE ID 4 88 -136 9 1512 318 50 0 0 chr6 121561116 121561156 -27955881 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1512 231 36 0 0 chr6 121561159 121561187 -27955850 + (CCA)n Simple_repeat Simple_repeat 1 28 0 9 1512 657 0 0 0 chr6 121562246 121562319 -27954718 + (TTC)n Simple_repeat Simple_repeat 3 75 0 9 1512 567 0 0 0 chr6 121562319 121562382 -27954655 + (TC)n Simple_repeat Simple_repeat 1 63 0 9 1512 241 349 19 9 chr6 121562736 121562843 -27954194 - Lx8 LINE L1 -1175 6298 6191 9 1512 1929 285 121 25 chr6 121563027 121563516 -27953521 - Lx8 LINE L1 -1669 5975 5426 9 1512 1052 144 42 21 chr6 121563516 121563707 -27953330 - B2_Mm2 SINE B2 0 195 1 9 1512 1929 283 129 29 chr6 121563707 121564111 -27952926 - Lx8 LINE L1 -422 5425 4982 9 1512 1121 137 184 0 chr6 121564111 121564301 -27952736 + URR1B DNA MER1_type 1 225 0 9 1512 1929 245 291 36 chr6 121564301 121564626 -27952411 - Lx8 LINE L1 -866 4981 4518 9 1512 390 290 9 0 chr6 121564606 121564713 -27952324 - L1_Mur3 LINE L1 -3263 2617 2510 1 1512 2957 163 30 6 chr6 121564723 121565248 -27951789 + RLTR31_Mm LTR ERVK 1 540 -21 1 1512 405 58 0 0 chr6 121565248 121565300 -27951737 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1 1512 348 241 12 12 chr6 121565514 121565594 -27951443 + RLTR33 LTR ERVK 450 529 -149 1 1512 1831 284 117 32 chr6 121565775 121565872 -27951165 - Lx8 LINE L1 -3314 2533 2441 9 1512 2040 160 88 6 chr6 121565872 121566211 -27950826 - ORR1B2 LTR MaLR 0 367 1 1 1512 1831 284 117 32 chr6 121566211 121567177 -27949860 - Lx8 LINE L1 -3407 2440 1381 9 1512 180 0 0 0 chr6 121568583 121568603 -27948434 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1512 229 349 12 0 chr6 121568779 121568865 -27948172 + L3 LINE CR1 3583 3669 -820 1 1512 204 157 19 56 chr6 121568993 121569047 -27947990 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1 1512 297 333 77 28 chr6 121569067 121569249 -27947788 - L2 LINE L2 -532 2887 2697 1 1512 239 316 59 48 chr6 121570460 121570749 -27946288 + L1M2 LINE L1 1666 1957 -4892 1 1512 221 187 8 101 chr6 121570757 121570769 -27946268 + (TAAA)n Simple_repeat Simple_repeat 2 12 0 1 1512 1079 210 43 14 chr6 121570769 121570977 -27946060 + B3 SINE B2 1 214 -2 1 1512 281 162 65 28 chr6 121570977 121571111 -27945926 + (TTAAA)n Simple_repeat Simple_repeat 1 138 0 1 1512 830 326 55 22 chr6 121571111 121571694 -27945343 + L1M2 LINE L1 1968 2569 -4280 1 1512 1686 231 102 3 chr6 121573063 121573437 -27943600 + MTD LTR MaLR 1 411 -8 1 1512 735 312 103 23 chr6 121574082 121574503 -27942534 + L1M2 LINE L1 5415 5867 -975 1 1512 1285 217 96 51 chr6 121574503 121574857 -27942180 - ORR1D2 LTR MaLR 0 370 1 1 1512 735 301 67 22 chr6 121574857 121575301 -27941736 + L1M2 LINE L1 5868 6346 -539 1 1512 575 291 7 0 chr6 121575318 121575459 -27941578 - MER2 DNA MER2_type -27 318 177 1 1512 1255 67 6 0 chr6 121576485 121576649 -27940388 - MTA_Mm LTR MaLR 0 396 232 1 1512 266 218 0 0 chr6 121577028 121577083 -27939954 + L1MB2 LINE L1 6064 6118 -53 1 1512 186 378 44 11 chr6 121578090 121578181 -27938856 - L4 LINE RTE -746 1283 1190 1 1512 582 221 122 20 chr6 121578644 121578792 -27938245 + RSINE1 SINE B4 1 163 -2 1 1512 324 0 0 0 chr6 121578806 121578842 -27938195 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1512 279 0 0 0 chr6 121579301 121579332 -27937705 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1512 1235 126 141 0 chr6 121580313 121580511 -27936526 - URR1A DNA MER1_type 0 226 1 1 1512 961 250 59 0 chr6 121580798 121581002 -27936035 + B3 SINE B2 1 216 0 1 1512 255 93 0 0 chr6 121581014 121581057 -27935980 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 1 1512 967 57 0 0 chr6 121581956 121582078 -27934959 - B1_Mm SINE Alu -25 122 1 1 1512 493 183 51 80 chr6 121582078 121582113 -27934924 - MT2B LTR ERVL -446 155 125 1 1512 324 120 0 0 chr6 121582683 121582733 -27934304 + (CCA)n Simple_repeat Simple_repeat 1 50 0 1 1512 361 238 147 28 chr6 121582792 121582968 -27934069 - L1MA5 LINE L1 -308 5992 5792 1 1512 752 232 92 106 chr6 121583104 121583388 -27933649 - MTE2a LTR MaLR -83 296 17 1 1512 315 122 0 0 chr6 121586336 121586385 -27930652 + (CTG)n Simple_repeat Simple_repeat 3 51 0 1 1512 306 0 0 0 chr6 121586814 121586848 -27930189 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1512 228 254 66 33 chr6 121587159 121587281 -27929756 + Charlie2b DNA MER1_type 2232 2357 -425 1 1512 27 49 0 0 chr6 121587288 121587329 -27929708 + AT_rich Low_complexity Low_complexity 1 41 0 1 1512 312 48 0 0 chr6 121587462 121587504 -27929533 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 1512 197 243 184 18 chr6 121590064 121590173 -27926864 + L2a LINE L2 2567 2693 -726 1 1512 522 0 0 0 chr6 121590210 121590268 -27926769 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1512 250 299 118 43 chr6 121590308 121590469 -27926568 + L2a LINE L2 3253 3425 -1 1 1512 606 183 0 0 chr6 121590780 121590900 -27926137 + (TA)n Simple_repeat Simple_repeat 2 121 0 1 1512 240 59 0 0 chr6 121590901 121590935 -27926102 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1512 368 229 9 0 chr6 121591691 121591800 -27925237 + GA-rich Low_complexity Low_complexity 3 112 0 1 1512 210 264 15 30 chr6 121592362 121592495 -27924542 + (CATA)n Simple_repeat Simple_repeat 4 134 0 1 1512 1245 96 0 0 chr6 121593173 121593351 -27923686 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 1 1512 818 76 93 0 chr6 121593357 121593475 -27923562 - L1Md_F2 LINE L1 -12 6570 6442 1 1512 34 0 0 0 chr6 121593693 121593727 -27923310 + AT_rich Low_complexity Low_complexity 1 34 0 1 1512 351 294 69 0 chr6 121593780 121593882 -27923155 + PB1D10 SINE Alu 1 109 -8 1 1512 28 0 0 0 chr6 121593889 121593917 -27923120 + AT_rich Low_complexity Low_complexity 1 28 0 1 1512 351 0 0 0 chr6 121595384 121595423 -27921614 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1512 333 0 0 0 chr6 121595594 121595631 -27921406 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1 1512 251 238 82 12 chr6 121596098 121596183 -27920854 + L1MA5 LINE L1 6210 6300 0 1 1512 425 235 0 10 chr6 121597283 121597386 -27919651 + L1MA6 LINE L1 6074 6175 -125 1 1512 567 274 88 33 chr6 121598294 121598475 -27918562 - B3A SINE B2 -7 191 1 1 1512 225 0 0 0 chr6 121599039 121599064 -27917973 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1512 25 31 0 0 chr6 121605625 121605657 -27911380 + AT_rich Low_complexity Low_complexity 1 32 0 1 1512 511 278 16 8 chr6 121605666 121605793 -27911244 + RSINE1 SINE B4 3 130 -35 1 1512 477 0 0 0 chr6 121605801 121605854 -27911183 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1512 735 72 0 0 chr6 121605854 121605964 -27911073 + (GA)n Simple_repeat Simple_repeat 2 112 0 1 1512 773 180 21 28 chr6 121605982 121606125 -27910912 + B1_Mur3 SINE Alu 7 148 -1 1 1512 24 0 0 0 chr6 121606182 121606206 -27910831 + AT_rich Low_complexity Low_complexity 1 24 0 1 1512 549 285 46 46 chr6 121606222 121606373 -27910664 - RSINE1 SINE B4 -4 161 11 1 1512 24 53 0 0 chr6 121606403 121606441 -27910596 + AT_rich Low_complexity Low_complexity 1 38 0 1 1512 212 298 0 0 chr6 121606708 121606765 -27910272 - L2b LINE L2 -8 3367 3311 1 1512 252 279 85 8 chr6 121608573 121608703 -27908334 + MER63D DNA AcHobo 856 995 -66 1 1512 261 269 127 87 chr6 121608953 121609206 -27907831 + L2c LINE L2 2938 3200 -187 1 1512 898 266 82 3 chr6 121609587 121609878 -27907159 - L1M2 LINE L1 -1708 4435 4122 1 1512 290 300 44 26 chr6 121611109 121611222 -27905815 + PB1D10 SINE Alu 3 117 0 1 1512 792 39 54 15 chr6 121611709 121611969 -27905068 + (TCTA)n Simple_repeat Simple_repeat 1 269 0 1 1512 904 70 40 12 chr6 121612001 121612174 -27904863 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 1 1512 481 293 86 25 chr6 121612729 121613009 -27904028 - L1M3b LINE L1 -1217 5162 4866 1 1512 291 279 71 32 chr6 121613063 121613189 -27903848 - RLTR12B LTR ERVK -31 497 367 1 1512 1590 265 54 28 chr6 121613376 121614095 -27902942 - Lx8 LINE L1 -1335 6138 5398 1 1512 1287 312 102 13 chr6 121614103 121614704 -27902333 + Lx8 LINE L1 6805 7458 -15 1 1512 618 254 234 26 chr6 121614925 121615555 -27901482 - L1M3b LINE L1 -3451 2928 2163 1 1512 379 325 106 33 chr6 121615602 121615933 -27901104 - L1M3b LINE L1 -5902 411 57 1 1512 422 182 36 21 chr6 121617353 121617493 -27899544 - Lx9 LINE L1 0 7644 7503 1 1512 247 333 49 0 chr6 121617759 121617840 -27899197 + B4A SINE B4 83 167 -125 1 1512 453 242 40 0 chr6 121617770 121617869 -27899168 + PB1D7 SINE Alu 9 111 -9 1 1512 234 0 0 0 chr6 121618661 121618687 -27898350 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1512 670 94 10 0 chr6 121618687 121618783 -27898254 - B1_Mm SINE Alu -24 123 27 1 1512 361 254 99 66 chr6 121618698 121618850 -27898187 - MT2B LTR ERVL -337 264 108 1 1512 1765 237 64 27 chr6 121620307 121620788 -27896249 - Lx8 LINE L1 -8 7465 6967 1 1512 284 382 72 10 chr6 121621301 121621510 -27895527 + MIRb SINE MIR 24 245 -23 1 1512 473 291 0 25 chr6 121622154 121622274 -27894763 - PB1D10 SINE Alu 0 117 1 1 1512 4489 62 2 7 chr6 121622920 121623458 -27893579 - L1_Mus2 LINE L1 0 6566 6032 1 1512 36 70 0 0 chr6 121624321 121624392 -27892645 + AT_rich Low_complexity Low_complexity 1 71 0 1 1512 991 204 32 12 chr6 121626440 121626693 -27890344 - Lx9 LINE L1 0 7644 7387 1 1512 554 168 335 0 chr6 121627638 121627799 -27889238 + URR1A DNA MER1_type 1 215 -11 1 1512 232 27 0 51 chr6 121628595 121628634 -27888403 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1512 1132 95 0 0 chr6 121628634 121628771 -27888266 - B1_Mus1 SINE Alu -10 138 2 1 1512 207 259 17 17 chr6 121629618 121629677 -27887360 + CT-rich Low_complexity Low_complexity 1 59 0 1 1512 350 267 48 113 chr6 121630385 121630571 -27886466 + RMER17C-int LTR ERVK 351 524 -2714 1 1512 6420 264 42 59 chr6 121630522 121632569 -27884468 + RodERV21-int LTR ERV1 705 2718 -2273 1 1512 992 145 47 18 chr6 121632582 121632751 -27884286 - RLTR13D4 LTR ERVK 0 1033 860 1 1512 530 120 0 0 chr6 121632741 121632816 -27884221 - RLTR13D4 LTR ERVK -948 75 1 1 1512 2459 160 71 52 chr6 121632816 121632865 -27884172 + RLTR13C1 LTR ERVK 479 516 -467 1 1512 1144 96 0 7 chr6 121632865 121633001 -27884036 + B1_Mus2 SINE Alu 2 137 -10 1 1512 437 0 19 0 chr6 121633001 121633054 -27883983 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1512 2459 160 71 52 chr6 121633064 121633510 -27883527 + RLTR13C1 LTR ERVK 517 983 0 1 1512 500 344 30 50 chr6 121633623 121634122 -27882915 + RodERV21-int LTR ERV1 3586 4074 -3017 1 1512 737 233 24 7 chr6 121634228 121634469 -27882568 - RLTR45-int LTR ERVK -501 7716 7506 1 23 6419 136 78 97 chr6 121634471 121635897 -27881140 - RLTR45-int LTR ERVK -1173 6071 4672 1 1513 3247 71 0 0 chr6 121635885 121636292 -27880745 - ETnERV2-int LTR ERVK -1644 5762 5356 1 1513 10257 152 40 30 chr6 121636290 121638310 -27878727 - ETnERV2-int LTR ERVK -2727 4679 2937 1 1513 503 193 92 0 chr6 121638329 121638438 -27878599 - RLTR19-int LTR ERVK -5081 1056 938 1 1513 352 258 117 31 chr6 121638441 121638569 -27878468 - RLTR19-int LTR ERVK -5469 668 530 1 1513 4925 57 0 2 chr6 121638569 121639150 -27877887 + L1Md_F2 LINE L1 5998 6577 -5 1 1513 1999 147 106 21 chr6 121639303 121639691 -27877346 - RMER16-int LTR ERVK -4735 671 251 1 1513 41913 9 1 2 chr6 121640007 121647205 -27869832 - L1Md_A LINE L1 0 6582 1 1 1513 2576 60 94 9 chr6 121647419 121647738 -27869299 + ORR1A1 LTR MaLR 1 346 0 1 1513 13658 81 13 2 chr6 121647739 121649510 -27867527 + ORR1A1-int LTR MaLR 2 1792 0 1 1513 3108 49 0 0 chr6 121649510 121649856 -27867181 + ORR1A1 LTR MaLR 1 346 0 1 1513 364 313 45 45 chr6 121649963 121650292 -27866745 - MER52-int LTR ERV1 -1973 5118 4870 1 1513 749 221 15 0 chr6 121650984 121651115 -27865922 + ETnERV2-int LTR ERVK 7070 7202 -204 2 1513 13943 5 0 0 chr6 121651524 121653052 -27863985 + L1Md_A LINE L1 4059 5586 -297 2 1513 9425 5 7 0 chr6 121653052 121654077 -27862960 + L1Md_A LINE L1 5587 6582 0 2 1513 289 293 50 50 chr6 121654151 121654478 -27862559 + MuLV-int LTR ERV1 4760 5253 -2525 2 1513 3627 333 59 40 chr6 121654578 121656730 -27860307 + RodERV21-int LTR ERV1 2694 4886 -105 2 1513 2554 260 103 68 chr6 121659548 121660167 -27856870 - Lx8 LINE L1 -2 7471 6855 2 1513 1121 118 6 0 chr6 121660167 121660345 -27856692 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 1513 2554 260 103 68 chr6 121660345 121660444 -27856593 - Lx8 LINE L1 -619 6854 6756 2 1513 252 0 0 0 chr6 121660444 121660472 -27856565 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1513 2554 260 103 68 chr6 121660472 121660715 -27856322 - Lx8 LINE L1 -718 6755 6477 2 1513 253 294 122 52 chr6 121661671 121661843 -27855194 - RMER2 LTR ERV1 -28 539 356 2 1513 1384 144 302 10 chr6 121662308 121662616 -27854421 - RMER10B LTR ERVL 0 398 1 2 1513 1021 192 14 37 chr6 121663367 121663412 -27853625 - ORR1C2 LTR MaLR 0 384 343 2 1513 1886 177 6 58 chr6 121663412 121663759 -27853278 - ORR1A4 LTR MaLR 0 329 1 2 1513 1021 192 14 37 chr6 121663759 121663929 -27853108 - ORR1C2 LTR MaLR -42 342 174 2 1513 241 217 0 24 chr6 121663929 121664014 -27853023 + GA-rich Low_complexity Low_complexity 4 86 0 2 1513 683 197 29 0 chr6 121665116 121665253 -27851784 - ORR1C2 LTR MaLR -1 373 233 2 1513 2830 212 31 38 chr6 121665449 121666061 -27850976 + RLTR18 LTR ERVK 4 611 -5 2 1513 247 362 9 113 chr6 121666054 121666160 -27850877 + RSINE1 SINE B4 71 165 0 2 1513 480 215 0 0 chr6 121666169 121666276 -27850761 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 2 1513 240 270 143 84 chr6 121666529 121666683 -27850354 + MLT1E3 LTR MaLR 77 239 -385 2 1513 240 246 188 0 chr6 121666916 121666985 -27850052 + MTE2b LTR MaLR 173 254 -125 2 1513 2914 257 82 7 chr6 121667382 121668216 -27848821 - ORR1C2-int LTR MaLR -474 896 1 2 1513 1775 192 51 16 chr6 121668216 121668587 -27848450 - ORR1C2 LTR MaLR 0 384 1 2 1513 1192 297 110 48 chr6 121668714 121669231 -27847806 + RMER13A LTR ERVK 98 646 -214 2 1513 503 314 11 87 chr6 121669737 121669922 -27847115 - B4A SINE B4 -120 172 2 2 1513 418 306 46 48 chr6 121669934 121670249 -27846788 + L1MC LINE L1 3485 3802 -2341 2 1513 2252 129 31 46 chr6 121670362 121670752 -27846285 - ORR1B1 LTR MaLR -10 384 1 2 1513 317 298 172 17 chr6 121670752 121670830 -27846207 + B3A SINE B2 59 152 -46 2 1513 405 0 0 0 chr6 121670830 121670875 -27846162 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1513 317 298 172 17 chr6 121670875 121670906 -27846131 + B3A SINE B2 153 186 -12 2 1513 469 246 29 46 chr6 121670906 121671106 -27845931 + B3 SINE B2 1 192 -3 2 1513 327 312 132 3 chr6 121671184 121671473 -27845564 + L1MC LINE L1 3907 4232 -1914 2 1513 23 33 0 0 chr6 121671594 121671624 -27845413 + AT_rich Low_complexity Low_complexity 1 30 0 2 1513 3684 154 77 16 chr6 121671672 121672630 -27844407 + RLTR13D1 LTR ERVK 1 1023 0 2 1513 641 119 18 0 chr6 121673187 121673296 -27843741 + (TTCC)n Simple_repeat Simple_repeat 3 113 0 2 1513 277 318 79 11 chr6 121673742 121673920 -27843117 + Charlie1 DNA MER1_type 786 975 -1806 2 1513 2246 174 0 35 chr6 121674254 121674676 -27842361 + MTB_Mm LTR MaLR 1 407 0 2 1513 310 303 350 22 chr6 121675654 121675929 -27841108 + MTEa LTR MaLR 7 371 -8 2 1513 1928 122 17 17 chr6 121676258 121676586 -27840451 - RLTR13D1 LTR ERVK -103 752 427 2 1513 829 298 91 30 chr6 121679916 121680092 -27836945 - ORR1D1 LTR MaLR -15 359 167 2 1513 563 0 15 0 chr6 121680092 121680159 -27836878 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 2 1513 829 298 91 30 chr6 121680159 121680311 -27836726 - ORR1D1 LTR MaLR -208 166 11 2 1513 1012 192 63 10 chr6 121680517 121680722 -27836315 - URR1B DNA MER1_type -5 220 5 2 1513 264 355 29 0 chr6 121681131 121681269 -27835768 + RMER15-int LTR ERVL 861 1002 -3997 2 1513 443 250 28 0 chr6 121681351 121681459 -27835578 + RMER15-int LTR ERVL 1017 1127 -3872 2 1513 389 215 40 70 chr6 121681789 121681889 -27835148 + RMER2 LTR ERV1 3 99 -468 2 1513 757 145 8 22 chr6 121681958 121682092 -27834945 - B1_Mur3 SINE Alu -16 133 2 2 1513 1354 77 6 6 chr6 121683977 121684159 -27832878 + B2_Mm2 SINE B2 4 185 -10 2 1513 426 121 0 0 chr6 121684930 121684996 -27832041 + (A)n Simple_repeat Simple_repeat 1 66 0 2 1513 1072 37 22 0 chr6 121686158 121686293 -27830744 + B1_Mm SINE Alu 10 147 0 2 1513 1287 19 13 0 chr6 121686400 121686555 -27830482 - L1Md_F2 LINE L1 -148 6434 6278 2 1513 965 8 0 16 chr6 121686555 121686681 -27830356 + L1Md_F2 LINE L1 6451 6574 -8 2 1513 855 310 52 31 chr6 121686725 121686827 -27830210 - Lx8 LINE L1 -554 6919 6818 2 1513 435 19 0 0 chr6 121686827 121686879 -27830158 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1513 855 310 52 31 chr6 121686879 121687222 -27829815 - Lx8 LINE L1 -656 6817 6467 2 1513 738 325 82 38 chr6 121687246 121687466 -27829571 + Lx8 LINE L1 6914 7129 -344 2 1513 429 20 0 0 chr6 121687466 121687516 -27829521 + (TAA)n Simple_repeat Simple_repeat 1 50 0 2 1513 738 325 82 38 chr6 121687516 121687768 -27829269 + Lx8 LINE L1 7130 7407 -66 2 1513 2345 291 52 80 chr6 121687991 121689262 -27827775 - Lx5 LINE L1 -24 7026 5770 2 1513 1697 181 88 33 chr6 121689332 121689402 -27827635 - ORR1B1 LTR MaLR -7 387 327 2 1513 315 0 0 0 chr6 121689402 121689437 -27827600 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1513 185 0 40 0 chr6 121689437 121689462 -27827575 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 2 1513 1697 181 88 33 chr6 121689462 121689755 -27827282 - ORR1B1 LTR MaLR -68 326 4 2 1513 641 279 46 109 chr6 121689809 121690111 -27826926 - B4 SINE B4 -2 290 8 2 1513 1649 215 154 33 chr6 121690155 121690636 -27826401 - Lx4B LINE L1 0 7058 6520 2 1513 314 319 84 23 chr6 121690715 121690930 -27826107 - L1M5 LINE L1 -1489 4657 4430 2 1513 265 93 0 0 chr6 121691087 121691130 -27825907 - L1_Mus1 LINE L1 -223 6344 6302 2 1513 1354 65 54 0 chr6 121691130 121691315 -27825722 + L1_Mus1 LINE L1 6373 6567 0 2 1513 394 199 70 3 chr6 121692029 121692123 -27824914 - PB1D9 SINE Alu -5 144 42 2 1513 600 318 0 0 chr6 121692124 121692256 -27824781 + C-rich Low_complexity Low_complexity 2 133 0 2 1513 445 202 0 47 chr6 121692394 121692565 -27824472 + CT-rich Low_complexity Low_complexity 3 165 0 2 1513 1940 299 39 28 chr6 121692691 121693512 -27823525 - Lx8 LINE L1 -610 6863 6034 2 1513 253 336 15 22 chr6 121693680 121693817 -27823220 - Lx9 LINE L1 -1660 5984 5849 2 1513 385 407 72 35 chr6 121693960 121694334 -27822703 - LTR78 LTR ERV1 -618 686 299 2 1513 675 163 14 47 chr6 121694771 121694919 -27822118 - URR1B DNA MER1_type 0 225 83 2 1513 24015 81 27 1 chr6 121697942 121700371 -27816666 - L1Md_A LINE L1 -1011 4872 2354 2 1513 216 0 0 0 chr6 121700371 121700395 -27816642 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1513 24015 88 26 1 chr6 121700395 121701634 -27815403 - L1Md_A LINE L1 -3530 2353 1108 2 1513 33081 76 3 4 chr6 121701632 121707797 -27809240 - L1Md_F3 LINE L1 -14 6570 415 2 1513 3756 112 83 0 chr6 121707799 121708413 -27808624 - L1Md_F LINE L1 -5472 1047 383 2 1513 1541 140 4 8 chr6 121708413 121708680 -27808357 - L1VL1 LINE L1 -6156 266 1 2 1513 354 274 5 63 chr6 121708687 121708878 -27808159 - L1M2 LINE L1 -2924 3219 3040 2 1513 734 258 22 31 chr6 121709609 121709837 -27807200 - Lx5 LINE L1 -5 7045 6820 2 1513 280 318 0 0 chr6 121710981 121711047 -27805990 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 2 1513 24 0 0 0 chr6 121712627 121712651 -27804386 + AT_rich Low_complexity Low_complexity 1 24 0 2 1513 740 335 70 32 chr6 121712791 121713662 -27803375 + L1M2 LINE L1 3002 3905 -2238 2 1513 476 252 42 36 chr6 121713995 121714160 -27802877 + RLTR15 LTR ERVK 3 168 -191 2 1513 193 75 50 0 chr6 121715127 121715167 -27801870 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 2 1513 667 225 42 118 chr6 121715825 121716037 -27801000 - B3A SINE B2 -1 197 2 2 1513 1056 273 80 10 chr6 121716058 121716446 -27800591 - Lx8 LINE L1 0 7473 7059 2 1513 545 331 19 0 chr6 121717986 121718143 -27798894 - RSINE1 SINE B4 0 165 6 2 1513 523 195 83 17 chr6 121718642 121718749 -27798288 + B1_Mur4 SINE Alu 2 118 -32 2 1513 492 18 0 0 chr6 121718749 121718806 -27798231 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1513 523 195 83 17 chr6 121718806 121718818 -27798219 + B1_Mur4 SINE Alu 119 129 -21 2 1513 455 189 0 25 chr6 121718818 121718975 -27798062 + GA-rich Low_complexity Low_complexity 1 153 0 2 1513 526 285 159 17 chr6 121719041 121719273 -27797764 + B4A SINE B4 6 270 -22 2 1513 522 46 0 0 chr6 121721346 121721411 -27795626 + (TAG)n Simple_repeat Simple_repeat 1 65 0 2 1513 574 153 193 8 chr6 121721423 121721542 -27795495 - B1_Mur2 SINE Alu -8 141 1 2 1513 2314 240 45 27 chr6 121722170 121722996 -27794041 - L1_Rod LINE L1 -335 5512 4672 2 1513 356 270 28 55 chr6 121723063 121723208 -27793829 - ORSL DNA Tip100 -133 142 2 2 1513 1044 228 179 15 chr6 121727991 121728320 -27788717 - MTD LTR MaLR -12 407 25 2 1513 468 35 0 0 chr6 121728324 121728382 -27788655 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1513 213 371 18 54 chr6 121729647 121729758 -27787279 - MIRb SINE MIR -160 108 2 2 1513 1105 135 11 6 chr6 121729894 121730073 -27786964 + B2_Mm2 SINE B2 2 181 -14 2 1513 202 158 0 66 chr6 121731326 121731387 -27785650 + GA-rich Low_complexity Low_complexity 3 59 0 2 1513 320 309 125 35 chr6 121731415 121731559 -27785478 + HAL1-3A_ME LINE L1 2285 2441 -417 2 1513 333 241 14 14 chr6 121731559 121731698 -27785339 + GA-rich Low_complexity Low_complexity 4 142 0 2 1513 243 164 0 0 chr6 121734789 121734850 -27782187 + (TCTCTG)n Simple_repeat Simple_repeat 2 62 0 2 1513 509 138 11 0 chr6 121735307 121735401 -27781636 + (TG)n Simple_repeat Simple_repeat 1 95 0 2 1513 414 273 157 0 chr6 121736892 121737013 -27780024 + B3 SINE B2 2 141 -75 2 1513 324 0 0 0 chr6 121737034 121737070 -27779967 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1513 379 275 37 0 chr6 121737592 121737701 -27779336 - PB1D10 SINE Alu 0 117 5 2 1513 480 258 30 38 chr6 121738275 121738408 -27778629 - RSINE1 SINE B4 -31 134 3 2 1513 389 358 22 7 chr6 121739335 121739473 -27777564 + B1F SINE Alu 10 149 0 2 1513 32627 81 5 7 chr6 121739606 121745558 -27771479 - L1Md_F2 LINE L1 -2 6580 651 2 1513 372 294 113 60 chr6 121745694 121745984 -27771053 + ORR1E LTR MaLR 1 295 -75 2 1513 319 226 16 0 chr6 121745976 121746038 -27770999 - ORR1E LTR MaLR -290 69 7 3 1513 254 302 121 50 chr6 121746061 121746260 -27770777 - ORR1E LTR MaLR -116 243 31 3 1513 2176 85 0 19 chr6 121746324 121746649 -27770388 - L1Md_F3 LINE L1 -1041 4842 4524 3 1513 5637 72 1 0 chr6 121746625 121747390 -27769647 + L1Md_F3 LINE L1 4821 5586 -297 3 1513 7834 52 7 2 chr6 121747390 121748382 -27768655 + L1Md_F3 LINE L1 5587 6583 -1 3 1513 330 272 19 148 chr6 121748696 121748959 -27768078 + L1M2 LINE L1 3463 3691 -2452 3 1513 4248 137 49 5 chr6 121748979 121750095 -27766942 + L1VL4 LINE L1 85 1236 -2323 3 1513 28409 116 9 3 chr6 121750096 121756069 -27760968 + L1_Mus1 LINE L1 555 6567 0 3 1513 19785 176 17 10 chr6 121756065 121760258 -27756779 + L1_Mus4 LINE L1 1637 5858 -778 3 1513 423 0 0 0 chr6 121760258 121760305 -27756732 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1513 6766 107 22 5 chr6 121760305 121761063 -27755974 + L1_Mus4 LINE L1 5859 6633 -3 3 1513 411 315 139 19 chr6 121761123 121761489 -27755548 + L1MC LINE L1 3951 4360 -1786 3 1513 32 0 0 0 chr6 121761490 121761522 -27755515 + AT_rich Low_complexity Low_complexity 1 32 0 3 1513 1948 133 16 0 chr6 121761557 121761880 -27755157 + RMER16-int LTR ERVK 1087 1414 -3992 3 1513 763 169 15 73 chr6 121761947 121762143 -27754894 + RMER16-int LTR ERVK 1354 1505 -3901 3 1513 517 202 0 85 chr6 121762200 121762330 -27754707 + RLTR41 LTR ERV1 91 209 -237 3 1513 814 140 0 48 chr6 121762368 121762556 -27754481 + A-rich Low_complexity Low_complexity 2 180 0 3 1513 290 247 37 12 chr6 121762558 121762640 -27754397 + RMER16-int LTR ERVK 1500 1583 -1731 3 1513 614 252 14 52 chr6 121762614 121762908 -27754129 + RMER16-int LTR ERVK 3232 3468 -3776 3 1513 28747 107 27 3 chr6 121762970 121765100 -27751937 + L1Md_F2 LINE L1 380 2532 -3351 3 1513 294 29 0 0 chr6 121765100 121765135 -27751902 + (CAAT)n Simple_repeat Simple_repeat 3 37 0 3 189 28747 86 20 4 chr6 121765135 121768114 -27748923 + L1Md_F2 LINE L1 2533 5584 -299 3 1514 7305 81 9 1 chr6 121768115 121769102 -27747935 + L1Md_F2 LINE L1 5588 6582 0 3 1514 403 270 0 0 chr6 121769142 121769231 -27747806 + RMER16-int LTR ERVK 2476 2564 -4842 3 1514 346 285 31 50 chr6 121769532 121769691 -27747346 + RNLTR23 LTR ERVK 487 642 0 3 1514 1106 271 20 11 chr6 121769884 121770238 -27746799 + RNERVK23-int LTR ERVK 182 538 -7679 3 1514 4927 253 11 16 chr6 121770861 121772173 -27744864 + RNERVK23-int LTR ERVK 4443 5747 -2470 3 1514 595 241 28 71 chr6 121772182 121772437 -27744600 + RNERVK23-int LTR ERVK 5718 5961 -2256 3 1514 265 306 24 8 chr6 121772437 121772562 -27744475 + MuRRS4-int LTR ERV1 4597 4723 -340 3 1514 764 21 11 0 chr6 121772566 121772660 -27744377 + (GA)n Simple_repeat Simple_repeat 1 95 0 3 1514 339 329 0 0 chr6 121772671 121772811 -27744226 + RNERVK23-int LTR ERVK 6335 6474 -770 3 1514 402 261 33 50 chr6 121773637 121773758 -27743279 + RLTR43A LTR ERVK 246 364 0 3 1514 2557 187 109 57 chr6 121773778 121774746 -27742291 + RMER16-int LTR ERVK 1566 2205 -3201 3 1514 4289 112 14 19 chr6 121774795 121775518 -27741519 + RMER16-int LTR ERVK 3823 4541 -865 3 1514 316 200 57 0 chr6 121777633 121777703 -27739334 + MTEa LTR MaLR 299 372 -7 3 1514 381 22 0 0 chr6 121779248 121779294 -27737743 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1514 236 290 46 53 chr6 121779440 121779702 -27737335 - L1M2 LINE L1 -2902 3241 2982 3 1514 208 264 10 52 chr6 121781406 121781502 -27735535 + GA-rich Low_complexity Low_complexity 2 93 0 3 1514 570 314 21 27 chr6 121782475 121782689 -27734348 - ORR1D1 LTR MaLR 0 378 164 3 1514 630 122 0 0 chr6 121782689 121782787 -27734250 + (TGGA)n Simple_repeat Simple_repeat 3 100 0 3 1514 514 226 58 116 chr6 121782798 121782988 -27734049 - ORR1D1 LTR MaLR -185 189 11 3 1514 1192 170 48 5 chr6 121783194 121783401 -27733636 - URR1B DNA MER1_type -5 220 5 3 1514 402 229 21 0 chr6 121783989 121784085 -27732952 + RMER15-int LTR ERVL 1016 1113 -3886 3 1514 613 226 8 14 chr6 121784505 121784653 -27732384 - B1_Mur3 SINE Alu -5 142 2 3 1514 7884 50 0 4 chr6 121784806 121786510 -27730527 - L1Md_F3 LINE L1 -9 6575 4879 3 1514 493 221 123 23 chr6 121786646 121786776 -27730261 - B1_Mur3 SINE Alu -5 144 2 3 1514 2370 206 104 67 chr6 121787198 121788100 -27728937 - RLTR13A LTR ERVK 0 855 11 3 1514 1109 136 17 11 chr6 121789551 121789730 -27727307 + B2_Mm2 SINE B2 9 188 -7 3 1514 639 314 71 12 chr6 121791776 121792098 -27724939 - Lx8 LINE L1 -564 6909 6569 3 1514 478 335 62 51 chr6 121792175 121792609 -27724428 + Lx8 LINE L1 6914 7352 -121 3 1514 1533 286 55 5 chr6 121792835 121794123 -27722914 - Lx6 LINE L1 -6 7454 5817 3 1514 332 175 0 0 chr6 121794219 121794276 -27722761 - ORR1B1 LTR MaLR -7 387 331 3 1514 203 250 0 14 chr6 121794289 121794358 -27722679 + A-rich Low_complexity Low_complexity 2 69 0 3 1514 1503 183 100 0 chr6 121794359 121794659 -27722378 - ORR1B1 LTR MaLR -62 332 3 3 1514 447 19 0 0 chr6 121794710 121794762 -27722275 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1514 709 282 62 39 chr6 121794785 121795043 -27721994 - B4 SINE B4 -21 271 8 3 1514 1170 256 155 41 chr6 121795088 121795572 -27721465 - Lx4A LINE L1 0 7058 6520 3 1514 287 230 64 109 chr6 121796680 121796836 -27720201 - B1_Mur1 SINE Alu 0 149 1 3 1514 342 171 16 41 chr6 121796931 121797053 -27719984 + CT-rich Low_complexity Low_complexity 2 120 0 3 1514 1880 304 33 22 chr6 121797188 121797948 -27719089 - Lx8 LINE L1 -610 6863 6096 3 1514 254 345 9 0 chr6 121797948 121798058 -27718979 + CT-rich Low_complexity Low_complexity 4 114 0 3 1514 273 336 46 25 chr6 121798165 121798403 -27718634 - Lx9 LINE L1 -1672 5972 5730 3 1514 727 176 14 40 chr6 121799250 121799398 -27717639 - URR1B DNA MER1_type 0 225 82 3 1514 495 0 0 0 chr6 121801185 121801240 -27715797 + (TCTA)n Simple_repeat Simple_repeat 1 55 0 3 1514 6608 103 38 16 chr6 121802430 121804220 -27712817 - L1_Mus2 LINE L1 -1 6565 4758 3 1514 779 289 22 41 chr6 121804232 121804718 -27712319 - L1_Rod LINE L1 -2667 3479 2995 3 1514 920 210 20 67 chr6 121805394 121805649 -27711388 - Lx5 LINE L1 0 7050 6808 3 1514 997 110 7 7 chr6 121808077 121808223 -27708814 + B1_Mm SINE Alu 2 147 0 3 1514 23 0 0 0 chr6 121808611 121808634 -27708403 + AT_rich Low_complexity Low_complexity 1 23 0 3 1514 1517 49 0 0 chr6 121808717 121808902 -27708135 + B2_Mm1a SINE B2 2 186 -7 3 1514 606 335 47 11 chr6 121809099 121809859 -27707178 + L1M2 LINE L1 3117 3917 -2229 3 1514 478 249 30 30 chr6 121810186 121810352 -27706685 + RLTR15 LTR ERVK 3 168 -191 3 1514 24 53 0 0 chr6 121810770 121810808 -27706229 + AT_rich Low_complexity Low_complexity 1 38 0 3 1514 193 238 47 16 chr6 121811062 121811126 -27705911 - L4 LINE RTE -1340 689 624 3 1514 248 0 0 30 chr6 121811330 121811363 -27705674 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 3 1514 545 258 64 53 chr6 121811998 121812186 -27704851 - B3A SINE B2 -7 191 2 3 1514 1080 279 82 15 chr6 121812212 121812601 -27704436 - Lx8 LINE L1 0 7473 7059 3 1514 563 282 43 31 chr6 121814151 121814312 -27702725 - RSINE1 SINE B4 0 165 3 3 1514 499 134 81 20 chr6 121814815 121814901 -27702136 + B1_Mus2 SINE Alu 22 115 -32 3 1514 480 18 0 0 chr6 121814901 121814958 -27702079 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1514 499 134 81 20 chr6 121814958 121814970 -27702067 + B1_Mus2 SINE Alu 116 126 -21 3 1514 477 222 0 0 chr6 121814970 121815141 -27701896 + GA-rich Low_complexity Low_complexity 1 171 0 3 1514 528 289 167 21 chr6 121815188 121815421 -27701616 + B4A SINE B4 4 270 -22 3 1514 20216 60 5 0 chr6 121816228 121818980 -27698057 + L1Md_F3 LINE L1 2820 5585 -298 3 1514 8174 35 3 7 chr6 121818981 121819982 -27697055 + L1Md_F3 LINE L1 5587 6583 -1 3 1514 231 359 0 13 chr6 121820753 121820832 -27696205 + ID4_ SINE ID 3 80 -3 3 1514 347 0 0 23 chr6 121820911 121820955 -27696082 + (TTA)n Simple_repeat Simple_repeat 2 44 0 3 1514 768 180 7 7 chr6 121820955 121821095 -27695942 - B1_Mur3 SINE Alu -9 140 1 3 1514 2167 242 59 25 chr6 121821711 121822524 -27694513 - L1_Rod LINE L1 -335 5512 4672 3 1514 319 301 29 43 chr6 121822591 121822730 -27694307 - ORSL DNA Tip100 -133 142 6 3 1514 473 0 18 0 chr6 121822871 121822928 -27694109 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1514 273 98 0 0 chr6 121825340 121825381 -27691656 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 3 1514 1003 226 169 56 chr6 121827614 121827855 -27689182 - MTD LTR MaLR -12 407 117 3 1514 1032 99 0 7 chr6 121827855 121827998 -27689039 + B1_Mm SINE Alu 1 142 -5 3 1514 369 109 0 0 chr6 121827999 121828054 -27688983 + (ATG)n Simple_repeat Simple_repeat 3 57 0 3 1514 1003 226 169 56 chr6 121828054 121828166 -27688871 - MTD LTR MaLR -303 116 12 3 1514 403 138 0 0 chr6 121828788 121828868 -27688169 - L1Md_F2 LINE L1 -1 6581 6502 3 1514 1079 141 11 16 chr6 121829759 121829946 -27687091 + B2_Mm2 SINE B2 2 187 -8 3 1514 308 280 232 0 chr6 121831262 121831387 -27685650 + HAL1-3A_ME LINE L1 2286 2439 -419 3 1514 494 310 11 17 chr6 121831421 121831598 -27685439 + GA-rich Low_complexity Low_complexity 3 178 0 3 1514 219 212 0 0 chr6 121834723 121834808 -27682229 + (TCTCTG)n Simple_repeat Simple_repeat 2 86 0 3 1514 981 144 0 0 chr6 121835261 121835483 -27681554 + (TG)n Simple_repeat Simple_repeat 1 222 0 3 1514 586 261 39 0 chr6 121836855 121836985 -27680052 + B3A SINE B2 2 136 -62 3 1514 336 24 0 0 chr6 121836998 121837039 -27679998 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1514 45 34 0 0 chr6 121837039 121837098 -27679939 + AT_rich Low_complexity Low_complexity 1 59 0 3 1514 291 311 44 0 chr6 121837586 121837676 -27679361 - B1F2 SINE Alu -51 98 5 3 1514 512 256 28 55 chr6 121838241 121838386 -27678651 - RSINE1 SINE B4 -22 143 3 3 1514 453 349 20 7 chr6 121839326 121839473 -27677564 + B1F SINE Alu 1 149 0 3 1514 344 332 102 48 chr6 121839698 121839989 -27677048 + ORR1E LTR MaLR 1 295 -75 3 1514 305 242 16 0 chr6 121839981 121840043 -27676994 - ORR1E LTR MaLR -290 69 7 3 1514 195 100 0 0 chr6 121840048 121840078 -27676959 + (TTAG)n Simple_repeat Simple_repeat 1 30 0 3 1514 227 298 99 78 chr6 121840114 121840256 -27676781 - ORR1E LTR MaLR -184 175 31 3 1514 22 0 0 0 chr6 121841143 121841165 -27675872 + AT_rich Low_complexity Low_complexity 1 22 0 3 1514 660 276 146 42 chr6 121841548 121841933 -27675104 + ERVL-B4-int LTR ERVL 1522 1946 -3768 3 1514 272 83 21 0 chr6 121842324 121842372 -27674665 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1514 305 248 19 152 chr6 121842699 121842956 -27674081 + L1M2 LINE L1 3463 3685 -2458 3 1514 4078 172 30 36 chr6 121842978 121843151 -27673886 + L1VL4 LINE L1 85 254 -6048 3 1514 7666 33 2 0 chr6 121843151 121844054 -27672983 + L1Md_T LINE L1 5677 6581 -1 3 1514 180 0 0 0 chr6 121844060 121844080 -27672957 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1514 4078 140 30 23 chr6 121844080 121845117 -27671920 + L1VL4 LINE L1 255 1296 -2263 3 1514 27079 123 14 4 chr6 121845118 121851037 -27666000 + L1_Mus1 LINE L1 591 6567 0 4 1514 3364 115 20 60 chr6 121851043 121851707 -27665330 + L1VL4 LINE L1 1286 1922 -1637 3 1514 4410 170 24 18 chr6 121851707 121852557 -27664480 - RLTR13A LTR ERVK 0 855 1 4 1514 7737 122 12 15 chr6 121852557 121853759 -27663278 + L1VL4 LINE L1 1917 3126 -433 3 1514 456 19 0 0 chr6 121853759 121853812 -27663225 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 4 1514 7737 122 12 15 chr6 121853812 121853975 -27663062 + L1VL4 LINE L1 3127 3278 -281 3 1514 369 272 18 0 chr6 121853975 121854089 -27662948 + L1M2 LINE L1 3655 3770 -2373 3 1514 572 66 73 52 chr6 121854090 121854186 -27662851 - MTB LTR MaLR 0 400 303 4 1514 6641 72 3 6 chr6 121854160 121855056 -27661981 + MTA_Mm-int LTR MaLR 205 1098 0 4 1514 2725 52 6 0 chr6 121855056 121855405 -27661632 + MTA_Mm LTR MaLR 1 351 -45 4 1514 8088 236 26 27 chr6 121855405 121857885 -27659152 + ETnERV-int LTR ERVK 11 2355 -3812 4 1514 380 113 0 0 chr6 121857890 121857952 -27659085 + L1_Mm LINE L1 3219 3280 -2603 4 1514 31581 76 3 1 chr6 121857952 121863139 -27653898 + L1Md_F2 LINE L1 446 5586 -297 4 1514 7313 77 2 8 chr6 121863140 121864129 -27652908 + L1Md_F2 LINE L1 5588 6570 -12 4 1514 514 294 44 30 chr6 121864131 121864401 -27652636 - Lx9 LINE L1 -502 7142 6869 4 1514 713 299 36 44 chr6 121864397 121864921 -27652116 - L1_Rod LINE L1 -2402 3445 2926 4 1514 893 230 21 58 chr6 121865546 121865786 -27651251 - Lx5 LINE L1 0 7050 6820 4 1514 17032 86 11 2 chr6 121867035 121870216 -27646821 - L1Md_F2 LINE L1 -12 6570 3363 4 1514 225 0 0 0 chr6 121871438 121871463 -27645574 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 1514 363 44 0 0 chr6 121871463 121871507 -27645530 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1514 22 0 0 0 chr6 121871805 121871827 -27645210 + AT_rich Low_complexity Low_complexity 1 22 0 4 1514 519 340 62 35 chr6 121872005 121872842 -27644195 + L1M2 LINE L1 3040 3874 -2006 4 1514 540 242 30 24 chr6 121873178 121873343 -27643694 + RLTR15 LTR ERVK 3 168 -191 4 1514 23 54 0 0 chr6 121873767 121873804 -27643233 + AT_rich Low_complexity Low_complexity 1 37 0 4 1514 210 105 0 0 chr6 121874316 121874354 -27642683 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 4 1514 535 257 109 49 chr6 121875002 121875186 -27641851 - B3A SINE B2 -2 196 2 4 1514 1081 283 77 10 chr6 121875209 121875598 -27641439 - Lx8 LINE L1 0 7473 7059 4 1514 556 338 19 0 chr6 121877134 121877294 -27639743 - RSINE1 SINE B4 0 165 3 4 1514 513 191 86 17 chr6 121877733 121877837 -27639200 + B1_Mur4 SINE Alu 5 118 -32 4 1514 315 0 0 0 chr6 121877837 121877872 -27639165 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1514 513 191 86 17 chr6 121877872 121877884 -27639153 + B1_Mur4 SINE Alu 119 129 -21 4 1514 546 203 0 0 chr6 121877884 121878037 -27639000 + GA-rich Low_complexity Low_complexity 1 153 0 4 1514 566 286 154 13 chr6 121878087 121878321 -27638716 + B4A SINE B4 4 270 -22 4 1514 23 0 0 0 chr6 121879227 121879250 -27637787 + AT_rich Low_complexity Low_complexity 1 23 0 4 1514 8193 67 3 0 chr6 121879661 121881516 -27635521 - L1Md_F3 LINE L1 0 6584 4724 4 1514 31383 56 7 23 chr6 121881503 121884256 -27632781 - L1Md_F3 LINE L1 0 6582 3943 4 1514 4711 67 7 0 chr6 121884256 121884870 -27632167 - L1Md_F2 LINE L1 0 6582 5965 4 1514 31383 58 2 34 chr6 121884870 121887362 -27629675 - L1Md_F3 LINE L1 -1941 3942 1471 4 1514 699 134 0 0 chr6 121888115 121888234 -27628803 + (TAG)n Simple_repeat Simple_repeat 1 119 0 4 1514 588 189 10 16 chr6 121888246 121888366 -27628671 - B1_Mur3 SINE Alu -8 112 1 4 1514 2575 254 45 26 chr6 121888992 121889824 -27627213 - L1_Rod LINE L1 -334 5513 4667 4 1514 305 308 29 43 chr6 121889885 121890024 -27627013 - ORSL DNA Tip100 -133 142 6 4 1514 1015 246 171 18 chr6 121894793 121895133 -27621904 - MTD LTR MaLR -12 407 16 4 1514 1003 128 0 0 chr6 121895764 121895912 -27621125 - L1_Mus1 LINE L1 0 6567 6420 4 189 1275 118 11 6 chr6 121896801 121896980 -27620057 + B2_Mm2 SINE B2 2 181 -14 4 1515 6234 85 6 0 chr6 121897184 121898017 -27619020 - L1_Mus1 LINE L1 0 6567 5730 4 1515 325 336 97 28 chr6 121898982 121899126 -27617911 + HAL1-3A_ME LINE L1 2286 2439 -419 4 1515 228 292 20 0 chr6 121899134 121899330 -27617707 + GA-rich Low_complexity Low_complexity 1 200 0 4 1515 182 182 0 49 chr6 121902461 121902542 -27614495 + (TCTCTG)n Simple_repeat Simple_repeat 4 80 0 4 1515 279 146 0 0 chr6 121902989 121903044 -27613993 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1515 606 278 33 0 chr6 121904426 121904577 -27612460 + B3A SINE B2 2 157 -41 4 1515 192 167 0 0 chr6 121904582 121904630 -27612407 + (TAA)n Simple_repeat Simple_repeat 2 49 0 4 1515 279 278 134 2 chr6 121905120 121905221 -27611816 - B1F2 SINE Alu -2 118 5 4 1515 537 259 26 52 chr6 121905777 121905932 -27611105 - RSINE1 SINE B4 -12 153 3 4 1515 2307 110 82 0 chr6 121906236 121906564 -27610473 - IAPEY2_LTR LTR ERVK -2 355 1 4 1515 9380 106 4 18 chr6 121906564 121907925 -27609112 - IAPEy-int LTR ERVK 0 7513 6171 4 1515 7505 136 24 8 chr6 121907906 121909098 -27607939 - IAPEY3-int LTR ERVK -6469 1211 1 4 1515 2185 111 9 9 chr6 121909102 121909428 -27607609 - IAPEY3_LTR LTR ERVK -6 326 1 4 1515 406 349 20 14 chr6 121910077 121910225 -27606812 + B1F SINE Alu 1 149 0 4 1515 343 318 112 95 chr6 121910448 121910733 -27606304 + ORR1E LTR MaLR 6 295 -75 4 1515 324 226 16 0 chr6 121910725 121910787 -27606250 - ORR1E LTR MaLR -290 69 7 4 1515 246 276 74 101 chr6 121910847 121910996 -27606041 - ORR1E LTR MaLR -184 175 31 4 1515 189 209 0 65 chr6 121911450 121911496 -27605541 + L4 LINE RTE 997 1039 -990 4 1515 180 219 0 0 chr6 121911639 121911680 -27605357 + CT-rich Low_complexity Low_complexity 2 42 0 4 1515 1049 111 7 7 chr6 121911683 121911828 -27605209 - B1_Mus2 SINE Alu 0 147 3 4 1515 1992 173 46 32 chr6 121911836 121912248 -27604789 - Lx2B LINE L1 0 7000 6583 4 1515 251 141 84 0 chr6 121912601 121912672 -27604365 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 1515 292 273 133 0 chr6 121912832 121912982 -27604055 + Lx8 LINE L1 7265 7434 -39 4 1515 874 274 129 44 chr6 121913438 121913850 -27603187 + ERVL-int LTR ERVL 1566 2012 -3745 4 1515 228 305 22 45 chr6 121914559 121914693 -27602344 + L1_Mur1 LINE L1 3473 3603 -2283 4 1515 296 217 108 42 chr6 121914664 121914784 -27602253 + L1M2 LINE L1 3558 3685 -2458 4 1515 4938 131 13 11 chr6 121914808 121916018 -27601019 + L1VL4 LINE L1 85 1296 -2263 4 1515 3545 144 47 0 chr6 121916014 121916630 -27600407 + L1Md_F LINE L1 88 1139 -5380 4 1515 19840 183 6 79 chr6 121916598 121918303 -27598734 + L1_Mur1 LINE L1 1205 2901 -2985 4 1515 9017 31 1 0 chr6 121918303 121919298 -27597739 + L1Md_A LINE L1 5587 6582 0 4 1515 19840 183 6 79 chr6 121919298 121919506 -27597531 + L1_Mur1 LINE L1 2902 2914 -2972 4 1515 569 241 65 14 chr6 121919506 121919645 -27597392 + RSINE1 SINE B4 3 148 -17 4 1515 405 0 0 0 chr6 121919649 121919694 -27597343 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1515 19840 183 6 79 chr6 121919694 121922229 -27594808 + L1_Mur1 LINE L1 2915 5334 -552 4 1515 2435 161 2 41 chr6 121922227 121922693 -27594344 + L1_Mur1 LINE L1 3301 3748 -2138 4 1515 586 55 73 52 chr6 121922693 121922789 -27594248 - MTB LTR MaLR 0 400 303 4 1515 6624 68 8 1 chr6 121922763 121923651 -27593386 + MTA_Mm-int LTR MaLR 205 1098 0 4 1515 2727 52 6 3 chr6 121923651 121924001 -27593036 + MTA_Mm LTR MaLR 1 351 -45 4 1515 8367 243 38 32 chr6 121924006 121926613 -27590424 + ETnERV-int LTR ERVK 25 2517 -3650 4 1515 1577 306 40 25 chr6 121926633 121927280 -27589757 + ETnERV-int LTR ERVK 2556 3212 -2955 4 1515 6963 46 8 5 chr6 121927585 121928443 -27588594 - L1Md_F2 LINE L1 -1 6581 5721 4 1515 7227 71 7 5 chr6 121928433 121929426 -27587611 - L1Md_F LINE L1 -5380 1344 345 4 1515 1198 254 7 3 chr6 121929444 121929737 -27587300 + RNERVK23-int LTR ERVK 216 509 -7708 4 1515 4727 277 10 4 chr6 121930408 121931639 -27585398 + RNERVK23-int LTR ERVK 4443 5680 -2537 4 1515 654 138 0 0 chr6 121931639 121931748 -27585289 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 4 1515 782 244 19 69 chr6 121931828 121932088 -27584949 + RNERVK23-int LTR ERVK 5715 5961 -2256 4 1515 516 270 13 0 chr6 121932090 121932242 -27584795 + RNERVK23-int LTR ERVK 7460 7613 -604 4 1515 837 266 20 36 chr6 121932255 121932298 -27584739 + RNERVK23-int LTR ERVK 7566 7608 -609 4 1515 1263 94 0 0 chr6 121932298 121932478 -27584559 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1515 837 266 20 36 chr6 121932478 121932687 -27584350 + RNERVK23-int LTR ERVK 7609 7814 -403 4 1515 377 276 48 66 chr6 121933410 121933577 -27583460 + RNLTR23 LTR ERVK 479 642 0 4 1515 938 178 94 80 chr6 121933594 121933878 -27583159 + RMER16-int LTR ERVK 1566 1802 -3604 4 1515 30834 99 14 6 chr6 121933885 121939062 -27577975 + L1Md_F2 LINE L1 370 5586 -297 4 1515 7506 94 4 5 chr6 121939063 121940093 -27576944 + L1Md_F2 LINE L1 5588 6582 0 4 1515 380 238 116 87 chr6 121941899 121942037 -27575000 + MTEa LTR MaLR 230 371 -8 4 1515 238 289 22 22 chr6 121943207 121943299 -27573738 + (TATATG)n Simple_repeat Simple_repeat 2 93 0 4 1515 454 281 100 55 chr6 121943705 121944014 -27573023 - L1M2 LINE L1 -2839 3304 2982 4 1515 234 284 23 80 chr6 121945200 121945288 -27571749 - Charlie25 DNA MER1_type -379 2145 2063 4 1515 262 286 21 32 chr6 121945718 121945812 -27571225 + GA-rich Low_complexity Low_complexity 1 93 0 4 1515 576 89 0 0 chr6 121946319 121946398 -27570639 + L1Md_F2 LINE L1 5507 5585 -298 4 1515 7145 74 30 3 chr6 121946399 121947359 -27569678 + L1Md_F2 LINE L1 5587 6572 -10 4 1515 25598 40 0 0 chr6 121947361 121950657 -27566380 - L1_Mm LINE L1 -649 5234 1938 4 1515 7302 41 2 76 chr6 121950653 121951735 -27565302 + L1Md_T LINE L1 4585 5586 -297 4 1515 8561 29 0 0 chr6 121951735 121952766 -27564271 + L1Md_T LINE L1 5587 6582 0 4 1515 758 321 87 30 chr6 121953766 121953956 -27563081 - ORR1D1 LTR MaLR 0 378 181 4 1515 847 35 26 0 chr6 121953956 121954070 -27562967 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 4 1515 758 310 92 32 chr6 121954070 121954225 -27562812 - ORR1D1 LTR MaLR -194 180 11 4 1515 1120 189 48 5 chr6 121954430 121954637 -27562400 - URR1B DNA MER1_type -5 220 5 4 1515 416 232 21 0 chr6 121955248 121955343 -27561694 + RMER15-int LTR ERVL 1017 1113 -3886 4 1515 649 245 7 33 chr6 121955763 121955915 -27561122 - B1_Mur3 SINE Alu 0 149 2 4 1515 289 263 66 99 chr6 121955915 121955955 -27561082 - MT2B2 LTR ERVL -432 152 118 4 1515 1233 91 23 6 chr6 121957798 121957975 -27559062 + B2_Mm2 SINE B2 5 184 -11 4 1515 267 133 0 0 chr6 121958738 121958783 -27558254 + (A)n Simple_repeat Simple_repeat 1 45 0 4 1515 504 0 0 0 chr6 121959546 121959602 -27557435 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1515 676 328 83 25 chr6 121960096 121960543 -27556494 - Lx8 LINE L1 -564 6909 6437 4 1515 614 323 84 44 chr6 121960559 121961013 -27556024 + Lx8 LINE L1 6933 7404 -69 4 1515 2008 322 52 88 chr6 121961233 121962492 -27554545 - Lx5 LINE L1 -20 7030 5817 4 1515 331 169 0 0 chr6 121962583 121962642 -27554395 - ORR1B1 LTR MaLR -7 387 329 4 1515 230 241 0 0 chr6 121962642 121962675 -27554362 + A-rich Low_complexity Low_complexity 1 33 0 4 1515 303 28 0 0 chr6 121962675 121962711 -27554326 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1515 230 241 0 0 chr6 121962711 121962735 -27554302 + A-rich Low_complexity Low_complexity 34 57 0 5 1515 1352 194 103 7 chr6 121962736 121963037 -27554000 - ORR1B1 LTR MaLR -62 332 3 4 1515 405 0 0 0 chr6 121963097 121963142 -27553895 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1515 294 326 0 0 chr6 121963166 121963252 -27553785 - B4 SINE B4 -21 271 186 5 1515 7624 30 34 1 chr6 121963521 121963590 -27553447 - L1Md_T LINE L1 -1 6581 6481 5 1515 188 67 0 32 chr6 121963590 121963621 -27553416 + (CCCA)n Simple_repeat Simple_repeat 4 33 0 5 1515 36503 55 11 8 chr6 121963621 121970043 -27546994 - L1Md_T LINE L1 -102 6480 99 5 1515 450 0 0 0 chr6 121970159 121970209 -27546828 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 5 1515 329 253 89 33 chr6 121970210 121970300 -27546737 - PB1D9 SINE Alu -13 136 42 5 1515 204 0 0 156 chr6 121970303 121970399 -27546638 + (CTCTG)n Simple_repeat Simple_repeat 5 85 0 5 1515 282 123 33 66 chr6 121970400 121970461 -27546576 - PB1D9 SINE Alu -61 59 1 5 1515 364 167 17 34 chr6 121970548 121970666 -27546371 + CT-rich Low_complexity Low_complexity 2 117 0 5 1515 1721 290 38 24 chr6 121970803 121971432 -27545605 - Lx8 LINE L1 -610 6863 6226 5 1515 337 299 64 39 chr6 121971764 121971997 -27545040 - Lx9 LINE L1 -1672 5972 5734 5 1515 282 392 104 18 chr6 121972139 121972360 -27544677 - LTR78 LTR ERV1 -708 596 357 5 1515 662 150 26 79 chr6 121972826 121972978 -27544059 - URR1B DNA MER1_type 0 225 82 5 1515 455 0 18 0 chr6 121974750 121974805 -27542232 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 5 1515 26054 126 22 20 chr6 121976017 121981021 -27536016 - L1_Mus2 LINE L1 -1 6565 1572 5 1515 1197 55 0 0 chr6 121981021 121981167 -27535870 - B1_Mm SINE Alu 0 147 2 5 1515 26054 125 7 41 chr6 121981167 121982342 -27534695 - L1_Mus2 LINE L1 -4312 1571 432 5 1515 239 295 9 0 chr6 121983092 121983197 -27533840 - L1M2 LINE L1 -669 5631 5526 5 1515 441 240 413 65 chr6 121983202 121983425 -27533612 + RLTR18 LTR ERVK 7 307 -309 5 1515 805 298 78 39 chr6 121983462 121983926 -27533111 - Lx9 LINE L1 -286 7358 6877 5 1515 782 291 14 42 chr6 121983932 121984366 -27532671 - L1_Rod LINE L1 -2402 3445 3024 5 1515 921 219 12 54 chr6 121985084 121985325 -27531712 - Lx5 LINE L1 0 7050 6820 5 1515 913 121 35 0 chr6 121987774 121987915 -27529122 + B1_Mm SINE Alu 2 147 0 5 1515 753 330 53 47 chr6 121988462 121989356 -27527681 + L1M2 LINE L1 3009 3907 -2236 5 1515 472 261 30 24 chr6 121989679 121989844 -27527193 + RLTR15 LTR ERVK 3 168 -191 5 1515 247 215 0 15 chr6 121990801 121990867 -27526170 + A-rich Low_complexity Low_complexity 1 65 0 5 1515 31035 54 4 18 chr6 121990955 121992282 -27524755 - L1Md_F2 LINE L1 -12 6570 5248 5 1515 189 0 0 0 chr6 121992282 121992303 -27524734 + (TA)n Simple_repeat Simple_repeat 2 22 0 5 1515 31035 80 5 39 chr6 121992303 121992963 -27524074 - L1Md_F2 LINE L1 -636 5247 4591 5 1515 1318 31 0 12 chr6 121992963 121993124 -27523913 + B2_Mm1a SINE B2 2 160 -33 5 1515 342 0 0 0 chr6 121993124 121993162 -27523875 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 1515 31035 78 4 31 chr6 121993162 121997369 -27519668 - L1Md_F2 LINE L1 -1293 4590 387 5 1515 556 247 63 63 chr6 121997925 121998115 -27518922 - B3A SINE B2 -7 191 2 5 1515 1032 284 80 8 chr6 121998137 121998524 -27518513 - Lx8 LINE L1 0 7473 7059 5 1515 494 293 32 39 chr6 122000055 122000211 -27516826 - RSINE1 SINE B4 0 165 11 1 1515 605 157 93 0 chr6 122000717 122000825 -27516212 + B1_Mur4 SINE Alu 6 123 -27 2 1515 1172 72 0 11 chr6 122000839 122001021 -27516016 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1515 192 233 0 0 chr6 122001046 122001119 -27515918 + GA-rich Low_complexity Low_complexity 2 74 0 4 1515 217 150 25 0 chr6 122001179 122001219 -27515818 + B3A SINE B2 4 44 -154 5 1515 213 175 66 121 chr6 122001185 122001276 -27515761 + B2_Mm1t SINE B2 10 95 -98 6 1515 28 0 0 0 chr6 122002303 122002331 -27514706 + AT_rich Low_complexity Low_complexity 1 28 0 7 1515 35662 66 6 3 chr6 122002593 122008106 -27508931 - L1Md_F3 LINE L1 0 6584 1055 8 1515 1683 201 16 6 chr6 122008105 122008471 -27508566 - L1Md_F3 LINE L1 -5914 810 441 8 1515 276 30 0 0 chr6 122009367 122009400 -27507637 + (TTA)n Simple_repeat Simple_repeat 3 35 0 9 1515 795 207 7 0 chr6 122009407 122009547 -27507490 - B1_Mur3 SINE Alu -8 141 1 1 1515 2693 247 43 29 chr6 122010157 122010991 -27506046 - L1_Rod LINE L1 -335 5512 4667 1 1515 325 284 28 50 chr6 122011052 122011193 -27505844 - ORSL DNA Tip100 -133 142 5 1 1515 9673 75 2 3 chr6 122011468 122013408 -27503629 - L1Md_F2 LINE L1 -1 6581 4646 1 1515 660 142 18 9 chr6 122013768 122013899 -27503138 - RLTR13A3 LTR ERVK 0 978 802 1 1515 33765 80 8 3 chr6 122014167 122015717 -27501320 - L1Md_F2 LINE L1 0 6582 5018 1 1515 3553 38 2 0 chr6 122015717 122016112 -27500925 + MTA_Mm LTR MaLR 1 396 0 1 1515 33765 91 12 9 chr6 122016112 122020498 -27496539 - L1Md_F2 LINE L1 -866 5017 629 1 1515 1008 243 176 15 chr6 122023945 122024275 -27492762 - MTD LTR MaLR -12 407 25 1 1515 399 21 0 0 chr6 122024279 122024327 -27492710 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1515 1136 75 7 0 chr6 122024960 122025107 -27491930 - L1_Mus1 LINE L1 0 6567 6420 1 1515 196 298 122 73 chr6 122025733 122025856 -27491181 - MIRb SINE MIR -138 130 2 2 1515 1301 107 11 6 chr6 122025992 122026171 -27490866 + B2_Mm2 SINE B2 2 181 -14 2 1515 6022 91 8 10 chr6 122026378 122027211 -27489826 - L1_Mus1 LINE L1 0 6567 5736 2 1516 468 231 7 40 chr6 122028129 122028559 -27488478 + GA-rich Low_complexity Low_complexity 1 415 0 2 1516 273 159 0 0 chr6 122031708 122031771 -27485266 + (TCTCTG)n Simple_repeat Simple_repeat 6 68 0 2 1516 579 144 0 0 chr6 122032270 122032381 -27484656 + (TG)n Simple_repeat Simple_repeat 1 111 0 2 1516 350 316 101 36 chr6 122032400 122032538 -27484499 - B4 SINE B4 -1 291 145 2 1516 656 254 35 0 chr6 122033744 122033886 -27483151 + B3A SINE B2 2 148 -50 2 1516 306 0 0 0 chr6 122033887 122033921 -27483116 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1516 450 0 0 0 chr6 122033926 122033976 -27483061 + (TTA)n Simple_repeat Simple_repeat 3 52 0 2 1516 374 278 44 0 chr6 122034488 122034578 -27482459 - B1F2 SINE Alu -51 98 5 3 1516 239 273 16 98 chr6 122034578 122034610 -27482427 + YREP_Mm Unknown Unknown 223 334 -1478 3 1516 573 257 7 48 chr6 122035145 122035292 -27481745 - RSINE1 SINE B4 -22 143 3 3 1516 395 306 37 7 chr6 122036235 122036370 -27480667 + B1F SINE Alu 11 149 0 3 1516 459 0 0 0 chr6 122036489 122036540 -27480497 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1516 382 298 101 78 chr6 122036620 122036878 -27480159 + ORR1E LTR MaLR 22 285 -74 3 1516 341 210 16 0 chr6 122036870 122036932 -27480105 - ORR1E LTR MaLR -290 69 7 3 1516 1866 204 50 25 chr6 122037863 122038266 -27478771 - Lx2B LINE L1 -1 6999 6587 3 1516 5185 144 19 8 chr6 122038328 122039948 -27477089 + L1Md_F LINE L1 380 2016 -3867 3 1516 31932 81 4 2 chr6 122039994 122045179 -27471858 + L1Md_F3 LINE L1 392 5586 -297 3 1516 7608 76 10 10 chr6 122045179 122046163 -27470874 + L1Md_F3 LINE L1 5587 6570 -14 3 1516 1357 149 16 6 chr6 122046177 122046443 -27470594 + L1_Mur2 LINE L1 3661 3942 -2201 4 1516 6335 32 0 0 chr6 122046479 122047175 -27469862 - L1Md_T LINE L1 -2 6580 5885 4 1516 5876 57 0 0 chr6 122047175 122047914 -27469123 + L1_Mus1 LINE L1 2329 3067 -2816 4 1516 13281 104 4 3 chr6 122047906 122050572 -27466465 + L1_Mus1 LINE L1 3899 6567 0 4 1516 204 106 62 31 chr6 122050904 122051001 -27466036 + (TA)n Simple_repeat Simple_repeat 2 101 0 4 1516 314 229 94 9 chr6 122051166 122051272 -27465765 + Lx8 LINE L1 7265 7379 -94 4 1516 408 324 35 7 chr6 122051626 122051769 -27465268 - MLT1A0 LTR MaLR -216 149 3 4 1516 412 221 126 74 chr6 122051778 122052008 -27465029 + ERVL-int LTR ERVL 1569 1810 -3947 4 1516 404 260 32 93 chr6 122052884 122053138 -27463899 + L1M2 LINE L1 3449 3694 -2452 4 1516 4870 142 13 6 chr6 122053158 122054360 -27462677 + L1VL4 LINE L1 85 1296 -2263 4 1516 4406 201 70 38 chr6 122054370 122056094 -27460943 + L1Md_F LINE L1 98 1560 -4326 4 1516 1159 101 0 7 chr6 122056094 122056243 -27460794 + B1_Mus1 SINE Alu 1 148 0 5 1516 5060 103 2 52 chr6 122056243 122056738 -27460299 + L1Md_F LINE L1 1552 2017 -3869 4 1516 5109 32 2 5 chr6 122056733 122057354 -27459683 - L1Md_A LINE L1 -5663 1061 443 5 1516 4662 67 81 4 chr6 122057382 122058540 -27458497 + L1Md_F2 LINE L1 5324 6570 -12 5 1516 4112 101 19 5 chr6 122058541 122059109 -27457928 + L1Md_F2 LINE L1 6005 6580 -2 5 1516 451 253 11 0 chr6 122059109 122059204 -27457833 + ETnERV2-int LTR ERVK 2477 2572 -4834 5 1516 311 268 31 39 chr6 122059528 122059656 -27457381 + RNLTR23 LTR ERVK 516 642 0 5 1516 1121 248 4 29 chr6 122059824 122060102 -27456935 + RNERVK23-int LTR ERVK 167 437 -7780 5 1516 2331 241 6 4 chr6 122060121 122060629 -27456408 + RNERVK23-int LTR ERVK 4889 5397 -2820 5 1516 1248 143 63 52 chr6 122060629 122060933 -27456104 - RLTR45 LTR ERVK 0 482 207 5 1516 2839 28 31 0 chr6 122060933 122061250 -27455787 - IAPLTR2b LTR ERVK 0 327 1 5 1516 14015 79 7 4 chr6 122061250 122063072 -27453965 - IAPEz-int LTR ERVK 0 6481 4656 5 1516 1882 83 0 0 chr6 122063071 122063311 -27453726 - IAPEY3-int LTR ERVK -5183 2497 2258 5 1516 421 70 0 0 chr6 122063316 122063373 -27453664 - B1_Mus1 SINE Alu -91 57 1 6 1516 4849 90 67 54 chr6 122063374 122064264 -27452773 - IAPEz-int LTR ERVK -5487 994 168 5 1516 267 222 0 0 chr6 122064264 122064309 -27452728 - RLTR27 LTR ERVK -34 275 231 6 1516 289 83 0 0 chr6 122064309 122064345 -27452692 - IAPEz-int LTR ERVK -1777 210 175 5 1516 243 315 0 0 chr6 122064345 122064399 -27452638 - RLTR27 LTR ERVK -34 275 222 6 1516 1126 138 110 13 chr6 122064399 122064626 -27452411 - IAPEz-int LTR ERVK -7330 251 3 5 1516 2841 41 28 0 chr6 122064628 122064946 -27452091 - IAPLTR2b LTR ERVK 0 327 1 5 1516 1554 79 21 34 chr6 122064948 122065183 -27451854 - RLTR45 LTR ERVK -250 232 1 6 1516 7000 55 12 0 chr6 122065183 122066017 -27451020 - RLTR45-int LTR ERVK 0 7244 6401 6 1516 227 299 27 130 chr6 122066017 122066163 -27450874 + LTR50 LTR ERVL 136 266 -529 6 1516 481 315 59 73 chr6 122066163 122066178 -27450859 - RNERVK23-int LTR ERVK -673 7544 7526 6 1516 494 234 0 0 chr6 122066178 122066285 -27450752 - MuRRS4-int LTR ERV1 -395 4668 4562 6 1516 481 315 59 73 chr6 122066285 122066585 -27450452 - RNERVK23-int LTR ERVK -673 7525 7129 6 1516 3792 56 4 40 chr6 122066674 122067173 -27449864 - RLTR45-int LTR ERVK -5596 1648 1168 6 1516 1799 103 7 0 chr6 122067314 122067586 -27449451 - RLTR45-int LTR ERVK -6058 1186 913 6 1516 1806 122 28 18 chr6 122067654 122067937 -27449100 - RLTR45-int LTR ERVK -6278 966 681 6 1516 1161 35 0 40 chr6 122068282 122068432 -27448605 - RLTR45-int LTR ERVK -6552 692 549 6 1516 3845 106 34 28 chr6 122069179 122069760 -27447277 - RLTR45-int LTR ERVK -6659 585 1 6 1516 2923 125 37 39 chr6 122069760 122070243 -27446794 - RLTR45 LTR ERVK 0 482 1 6 1516 2132 240 5 84 chr6 122070243 122070862 -27446175 + RNERVK23-int LTR ERVK 5392 5961 -2256 6 1516 1073 274 82 6 chr6 122070864 122070986 -27446051 + RNERVK23-int LTR ERVK 7460 7584 -633 6 1516 243 103 0 0 chr6 122070986 122071025 -27446012 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 1516 1073 274 82 6 chr6 122071025 122071232 -27445805 + RNERVK23-int LTR ERVK 7585 7813 -404 6 1516 413 261 42 60 chr6 122071956 122072123 -27444914 + RNLTR23 LTR ERVK 479 642 0 6 1516 4093 170 137 53 chr6 122072197 122073145 -27443892 + RMER16-int LTR ERVK 1570 2597 -2809 7 1516 4010 120 13 20 chr6 122073143 122073780 -27443257 + RMER16-int LTR ERVK 3808 4439 -967 7 1516 15834 146 22 24 chr6 122074004 122076908 -27440129 + ETnERV2-int LTR ERVK 1660 6422 -984 7 1516 372 187 0 0 chr6 122077123 122077198 -27439839 + ETnERV2-int LTR ERVK 7331 7405 -1 7 1516 1467 213 32 66 chr6 122077203 122077610 -27439427 + RLTR9C LTR ERVK 1 393 0 7 1516 624 93 0 49 chr6 122077610 122077712 -27439325 + RMER16-int LTR ERVK 4454 4550 -856 7 1516 336 244 34 23 chr6 122079126 122079214 -27437823 + MTEa LTR MaLR 283 371 -8 7 1516 596 88 0 52 chr6 122080140 122080236 -27436801 + RMER16-int LTR ERVK 4460 4550 -856 7 1516 225 315 0 0 chr6 122080980 122081034 -27436003 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1516 290 290 105 56 chr6 122081326 122081753 -27435284 - L1_Rod LINE L1 -2429 3418 2971 7 1516 284 275 0 24 chr6 122083491 122083573 -27433464 + GA-rich Low_complexity Low_complexity 3 82 0 7 1516 523 333 17 11 chr6 122085078 122085254 -27431783 - ORR1D1 LTR MaLR -15 359 183 7 1516 502 15 30 0 chr6 122085256 122085323 -27431714 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 7 1516 433 268 17 35 chr6 122085430 122085546 -27431491 + RMER15-int LTR ERVL 996 1109 -3890 7 1516 624 239 7 34 chr6 122085969 122086116 -27430921 - B1_Mur3 SINE Alu -5 144 2 8 1516 207 0 0 0 chr6 122086879 122086902 -27430135 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1516 808 87 32 0 chr6 122087659 122087785 -27429252 + L1Md_F2 LINE L1 6452 6581 -1 8 1516 1229 119 17 6 chr6 122087801 122087979 -27429058 + B2_Mm2 SINE B2 5 184 -11 8 1516 687 12 0 0 chr6 122088808 122088888 -27428149 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 8 1516 897 335 51 15 chr6 122090147 122090614 -27426423 - Lx8 LINE L1 -554 6919 6436 8 1516 447 341 66 47 chr6 122090625 122090942 -27426095 + Lx8 LINE L1 6930 7252 -221 8 1516 17999 80 1 2 chr6 122090934 122093321 -27423716 + L1Md_F2 LINE L1 3201 5585 -298 8 1516 8732 33 4 9 chr6 122093322 122094321 -27422716 + L1Md_F2 LINE L1 5587 6580 -2 8 1516 237 256 249 30 chr6 122094344 122094513 -27422524 + Lx8 LINE L1 7264 7469 -4 8 1516 1697 261 47 12 chr6 122094661 122095579 -27421458 - Lx6 LINE L1 -6 7454 6222 8 1516 280 190 17 0 chr6 122095751 122095809 -27421228 - ORR1B1 LTR MaLR -7 387 329 8 1516 221 222 0 27 chr6 122095817 122095891 -27421146 + A-rich Low_complexity Low_complexity 2 73 0 8 1516 1454 183 100 0 chr6 122095891 122096191 -27420846 - ORR1B1 LTR MaLR -62 332 3 8 1516 531 0 0 0 chr6 122096245 122096304 -27420733 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1516 649 309 45 60 chr6 122096324 122096592 -27420445 - B4 SINE B4 -21 271 8 9 1516 1391 205 41 54 chr6 122096636 122097123 -27419914 - Lx4B LINE L1 -3 6997 6519 9 1516 912 19 0 0 chr6 122098226 122098332 -27418705 + (GTTTG)n Simple_repeat Simple_repeat 2 107 0 9 1516 311 268 27 0 chr6 122098332 122098418 -27418619 - PB1D9 SINE Alu -11 138 42 9 1516 204 0 0 156 chr6 122098421 122098517 -27418520 + (CTCTG)n Simple_repeat Simple_repeat 5 85 0 9 1516 281 140 33 66 chr6 122098518 122098579 -27418458 - PB1D9 SINE Alu -61 59 1 9 1516 311 263 8 0 chr6 122098679 122098797 -27418240 + CT-rich Low_complexity Low_complexity 3 121 0 9 1516 1443 304 38 20 chr6 122098941 122099448 -27417589 - Lx8 LINE L1 -611 6862 6347 9 1516 708 162 13 66 chr6 122099791 122099943 -27417094 - URR1B DNA MER1_type 0 225 82 9 1516 527 0 16 0 chr6 122101723 122101786 -27415251 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 1 1516 28260 126 22 21 chr6 122102998 122108007 -27409030 - L1_Mus2 LINE L1 -1 6565 1572 1 1516 1267 55 0 0 chr6 122108007 122108153 -27408884 - B1_Mm SINE Alu 0 147 2 1 1516 28260 122 8 11 chr6 122108153 122108665 -27408372 - L1_Mus2 LINE L1 -4312 1571 1057 1 1516 4598 109 6 3 chr6 122108665 122109341 -27407696 + L1Md_F2 LINE L1 5935 6582 0 1 1516 380 238 116 87 chr6 122111147 122111285 -27405752 + MTEa LTR MaLR 230 371 -8 1 1516 238 289 22 22 chr6 122112457 122112549 -27404488 + (TATATG)n Simple_repeat Simple_repeat 2 93 0 1 1516 454 281 100 55 chr6 122112955 122113264 -27403773 - L1M2 LINE L1 -2839 3304 2982 1 1516 234 284 23 80 chr6 122114450 122114538 -27402499 - Charlie25 DNA MER1_type -379 2145 2063 1 1516 262 286 21 32 chr6 122114968 122115062 -27401975 + GA-rich Low_complexity Low_complexity 1 93 0 1 1516 576 89 0 0 chr6 122115569 122115648 -27401389 + L1Md_F2 LINE L1 5507 5585 -298 1 1516 7189 74 29 3 chr6 122115649 122116610 -27400427 + L1Md_F2 LINE L1 5587 6572 -10 1 1516 25582 40 0 0 chr6 122116612 122119908 -27397129 - L1_Mm LINE L1 -649 5234 1938 1 1516 7302 41 2 76 chr6 122119904 122120986 -27396051 + L1Md_T LINE L1 4585 5586 -297 1 1516 8549 30 0 0 chr6 122120986 122122017 -27395020 + L1Md_T LINE L1 5587 6582 0 1 1516 722 324 82 22 chr6 122123047 122123207 -27393830 - ORR1D1 LTR MaLR -29 345 174 1 1516 883 34 25 0 chr6 122123207 122123325 -27393712 + (TAGA)n Simple_repeat Simple_repeat 2 122 0 1 1516 722 324 82 22 chr6 122123325 122123480 -27393557 - ORR1D1 LTR MaLR -201 173 12 1 1516 1120 189 48 5 chr6 122123685 122123892 -27393145 - URR1B DNA MER1_type -5 220 5 1 1516 416 232 21 0 chr6 122124503 122124598 -27392439 + RMER15-int LTR ERVL 1017 1113 -3886 1 1516 649 245 7 33 chr6 122125018 122125170 -27391867 - B1_Mur3 SINE Alu 0 149 2 1 1516 289 263 66 99 chr6 122125170 122125210 -27391827 - MT2B2 LTR ERVL -432 152 118 1 1516 1233 91 23 6 chr6 122127053 122127230 -27389807 + B2_Mm2 SINE B2 5 184 -11 1 1516 276 130 0 0 chr6 122127993 122128039 -27388998 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1516 486 0 0 0 chr6 122128802 122128856 -27388181 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1516 676 328 83 25 chr6 122129350 122129797 -27387240 - Lx8 LINE L1 -564 6909 6437 1 1516 599 325 84 44 chr6 122129813 122130267 -27386770 + Lx8 LINE L1 6933 7404 -69 1 1516 2008 322 52 88 chr6 122130487 122131746 -27385291 - Lx5 LINE L1 -20 7030 5817 1 1516 331 169 0 0 chr6 122131837 122131896 -27385141 - ORR1B1 LTR MaLR -7 387 329 1 1516 220 152 0 42 chr6 122131896 122131929 -27385108 + A-rich Low_complexity Low_complexity 5 36 0 1 1516 318 50 0 0 chr6 122131929 122131969 -27385068 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1516 220 152 0 42 chr6 122131969 122131983 -27385054 + A-rich Low_complexity Low_complexity 37 50 0 1 1516 1352 194 103 7 chr6 122131991 122132292 -27384745 - ORR1B1 LTR MaLR -62 332 3 1 1516 387 0 0 0 chr6 122132352 122132395 -27384642 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1516 294 326 0 0 chr6 122132419 122132505 -27384532 - B4 SINE B4 -21 271 186 1 1516 7553 33 33 0 chr6 122132774 122132843 -27384194 - L1Md_A LINE L1 -1 6581 6513 1 1516 188 67 0 32 chr6 122132843 122132874 -27384163 + (CCCA)n Simple_repeat Simple_repeat 4 33 0 1 1516 36499 56 11 8 chr6 122132874 122139296 -27377741 - L1Md_A LINE L1 -70 6512 99 1 1516 369 0 0 0 chr6 122139412 122139453 -27377584 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 1 1516 329 253 89 33 chr6 122139453 122139543 -27377494 - PB1D9 SINE Alu -13 136 42 1 1516 282 123 33 66 chr6 122139631 122139692 -27377345 - PB1D9 SINE Alu -61 59 1 1 1516 364 167 17 34 chr6 122139779 122139897 -27377140 + CT-rich Low_complexity Low_complexity 2 117 0 1 1516 1721 290 38 24 chr6 122140034 122140663 -27376374 - Lx8 LINE L1 -610 6863 6226 1 1516 337 299 64 39 chr6 122140995 122141228 -27375809 - Lx9 LINE L1 -1672 5972 5734 1 1516 282 392 104 18 chr6 122141370 122141591 -27375446 - LTR78 LTR ERV1 -708 596 357 1 1516 662 150 26 79 chr6 122142057 122142209 -27374828 - URR1B DNA MER1_type 0 225 82 1 1516 334 205 44 88 chr6 122144156 122144247 -27372790 + ID_B1 SINE B4 81 167 -57 1 1516 225 270 72 80 chr6 122144157 122144282 -27372755 + B1_Mus2 SINE Alu 1 124 -23 1 1516 19739 10 14 0 chr6 122144282 122146603 -27370434 - MERVL-int LTR ERVL -3131 2354 1 1 1516 4419 12 2 0 chr6 122146603 122147095 -27369942 - MT2_Mm LTR ERVL 0 493 1 1 1516 11288 116 35 13 chr6 122147311 122149944 -27367093 - L1_Mus2 LINE L1 -2 6564 3906 1 1516 524 268 47 8 chr6 122150334 122150462 -27366575 - ETnERV2-int LTR ERVK -204 7202 7070 1 1516 5073 166 0 15 chr6 122150464 122151478 -27365559 - L1_Mm LINE L1 -1973 3910 2912 1 1516 15342 54 2 1 chr6 122151473 122154196 -27362841 - L1Md_F2 LINE L1 0 6582 3857 1 1516 280 250 0 0 chr6 122154211 122154271 -27362766 - L1VL1 LINE L1 -6339 83 24 1 1516 280 306 0 0 chr6 122155024 122155122 -27361915 - L1M2 LINE L1 -674 5623 5526 1 1516 456 219 413 65 chr6 122155127 122155350 -27361687 + RLTR18 LTR ERVK 7 307 -309 1 1516 721 307 78 35 chr6 122155387 122155849 -27361188 - Lx9 LINE L1 -286 7358 6877 1 1516 776 300 36 38 chr6 122155880 122156379 -27360658 - L1_Rod LINE L1 -2424 3423 2926 1 1516 914 224 12 50 chr6 122157007 122157247 -27359790 - Lx5 LINE L1 0 7050 6820 1 1516 225 305 51 0 chr6 122157505 122157564 -27359473 - ID4 SINE ID -13 70 9 1 1516 249 349 0 0 chr6 122158395 122158461 -27358576 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 1 1517 30271 28 5 1 chr6 122159792 122164246 -27352791 - L1Md_T LINE L1 -2 6580 2116 1 1517 4696 63 3 60 chr6 122164246 122164975 -27352062 - L1Md_T LINE L1 -5455 1269 583 1 1517 22 0 0 0 chr6 122165261 122165283 -27351754 + AT_rich Low_complexity Low_complexity 1 22 0 1 1517 4615 125 3 0 chr6 122165394 122166129 -27350908 - L1Md_F LINE L1 -5579 940 204 1 1517 237 135 0 0 chr6 122166127 122166164 -27350873 - L1Md_T LINE L1 -6190 426 390 1 1517 493 358 53 10 chr6 122166168 122166662 -27350375 + L1M2 LINE L1 3400 3914 -2229 1 1517 440 231 19 70 chr6 122166990 122167148 -27349889 + RLTR15 LTR ERVK 3 152 -207 1 1517 1208 21 21 0 chr6 122167226 122167370 -27349667 + B1_Mm SINE Alu 1 147 0 1 1517 1244 53 6 0 chr6 122167379 122167548 -27349489 + (GAAAA)n Simple_repeat Simple_repeat 2 171 0 1 1517 398 20 0 19 chr6 122168462 122168514 -27348523 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 1 1517 519 242 66 71 chr6 122169148 122169344 -27347693 - B3A SINE B2 -2 196 2 1 1517 1251 266 21 3 chr6 122169462 122169753 -27347284 - Lx8 LINE L1 -119 7354 7059 1 1517 525 266 30 48 chr6 122171287 122171453 -27345584 - RSINE1 SINE B4 0 165 3 1 1517 39626 54 12 3 chr6 122171472 122177953 -27339084 - L1Md_T LINE L1 -2 6583 102 1 1517 502 165 97 0 chr6 122178450 122178553 -27338484 + B1_Mur4 SINE Alu 6 118 -32 1 1517 243 0 0 0 chr6 122178553 122178580 -27338457 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1517 225 233 0 0 chr6 122178599 122178689 -27338348 + GA-rich Low_complexity Low_complexity 2 91 0 1 1517 457 288 163 17 chr6 122178752 122178985 -27338052 + B4A SINE B4 4 270 -22 1 1517 25 0 0 0 chr6 122179885 122179910 -27337127 + AT_rich Low_complexity Low_complexity 1 25 0 1 1517 183 100 0 0 chr6 122181047 122181077 -27335960 + (TAG)n Simple_repeat Simple_repeat 3 32 0 1 1517 585 151 183 8 chr6 122181089 122181209 -27335828 - B1_Mur2 SINE Alu -8 141 1 1 1517 2787 244 44 26 chr6 122181843 122182664 -27334373 - L1_Rod LINE L1 -345 5502 4667 1 1517 275 297 11 42 chr6 122182761 122182856 -27334181 - ORSL DNA Tip100 -170 105 14 1 1517 858 245 144 28 chr6 122186570 122186897 -27330140 - MTD LTR MaLR -30 389 25 1 1517 180 0 0 0 chr6 122186901 122186921 -27330116 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1517 1163 61 0 0 chr6 122187547 122187695 -27329342 - L1_Mus1 LINE L1 0 6567 6420 1 1517 1202 118 11 6 chr6 122188581 122188760 -27328277 + B2_Mm2 SINE B2 2 181 -14 1 1517 6261 84 10 0 chr6 122188969 122189799 -27327238 - L1_Mus1 LINE L1 0 6567 5730 1 1517 215 262 0 12 chr6 122190761 122190842 -27326195 + GA-rich Low_complexity Low_complexity 4 83 0 1 1517 429 205 6 57 chr6 122190856 122191032 -27326005 + GA-rich Low_complexity Low_complexity 3 169 0 1 1517 267 313 0 12 chr6 122191037 122191121 -27325916 + G-rich Low_complexity Low_complexity 2 84 0 1 1517 299 174 12 0 chr6 122194296 122194382 -27322655 + (TCTCTG)n Simple_repeat Simple_repeat 6 92 0 1 1517 834 62 0 0 chr6 122194879 122194992 -27322045 + (TG)n Simple_repeat Simple_repeat 1 113 0 1 1517 582 223 39 0 chr6 122196356 122196486 -27320551 + B3A SINE B2 2 136 -62 1 1517 324 0 0 0 chr6 122196499 122196535 -27320502 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1517 369 0 0 0 chr6 122196537 122196578 -27320459 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1 1517 349 284 36 9 chr6 122197065 122197175 -27319862 - PB1D10 SINE Alu 0 117 5 1 1517 493 234 30 38 chr6 122197755 122197888 -27319149 - RSINE1 SINE B4 -31 134 3 1 1517 363 315 20 20 chr6 122198835 122198984 -27318053 + B1F SINE Alu 1 149 0 1 1517 180 0 0 0 chr6 122199105 122199125 -27317912 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1517 298 272 37 37 chr6 122199209 122199316 -27317721 + ORR1E LTR MaLR 22 128 -231 1 1517 287 258 16 0 chr6 122199472 122199534 -27317503 - ORR1E LTR MaLR -290 69 7 1 1517 265 270 67 48 chr6 122199657 122199762 -27317275 - ORR1E LTR MaLR -222 137 31 1 1517 732 54 0 0 chr6 122200041 122200134 -27316903 + (GAA)n Simple_repeat Simple_repeat 2 94 0 1 1517 1862 232 43 107 chr6 122200397 122201467 -27315570 + RMER17B LTR ERVK 1 899 -9 1 1517 2573 138 43 7 chr6 122201469 122201892 -27315145 - Lx2B LINE L1 -142 6858 6421 1 1517 382 263 117 13 chr6 122202406 122202560 -27314477 + Lx8 LINE L1 7265 7434 -39 1 1517 864 152 0 0 chr6 122202614 122202765 -27314272 + (CA)n Simple_repeat Simple_repeat 2 152 0 1 1517 687 291 76 81 chr6 122202779 122203112 -27313925 + L1MA4 LINE L1 4804 5154 -989 1 1517 3364 44 2 7 chr6 122203112 122203527 -27313510 + L1Md_F2 LINE L1 6167 6579 -3 2 1517 687 291 76 81 chr6 122203527 122203652 -27313385 + L1MA4 LINE L1 5155 5260 -883 1 1517 450 0 0 0 chr6 122203672 122203722 -27313315 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1517 406 281 61 30 chr6 122203767 122203784 -27313253 + ID_B1 SINE B4 78 213 -11 2 1517 454 244 104 0 chr6 122203784 122203899 -27313138 + B1F SINE Alu 12 138 -11 2 1517 917 169 0 11 chr6 122203912 122204092 -27312945 + GA-rich Low_complexity Low_complexity 3 180 0 2 1517 510 17 0 0 chr6 122204094 122204153 -27312884 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 2 1517 504 280 166 43 chr6 122204289 122204414 -27312623 + L1MA4 LINE L1 5465 5631 -525 1 1517 2503 126 35 47 chr6 122204414 122204840 -27312197 - MTC LTR MaLR 0 421 1 2 1517 558 279 62 35 chr6 122204840 122205192 -27311845 + L1MA4 LINE L1 5632 5994 -309 1 1517 1403 77 22 0 chr6 122205294 122205476 -27311561 + B2_Mm2 SINE B2 1 186 -9 2 1517 224 261 0 0 chr6 122206164 122206210 -27310827 + (CAGG)n Simple_repeat Simple_repeat 2 47 0 2 1517 501 243 75 6 chr6 122206431 122206595 -27310442 + L1MC LINE L1 5324 5501 -623 2 1517 234 297 39 19 chr6 122206604 122206707 -27310330 + Lx8 LINE L1 7119 7223 -250 2 1517 630 0 0 0 chr6 122207058 122207128 -27309909 + (GAA)n Simple_repeat Simple_repeat 2 71 0 2 1517 1389 73 0 0 chr6 122207128 122207637 -27309400 + (GGA)n Simple_repeat Simple_repeat 1 509 0 2 1517 316 274 39 10 chr6 122207831 122207934 -27309103 + PB1D10 SINE Alu 7 112 -5 2 1517 615 112 0 0 chr6 122209132 122209230 -27307807 + (CA)n Simple_repeat Simple_repeat 2 99 0 2 1517 537 142 0 0 chr6 122210192 122210305 -27306732 + (TG)n Simple_repeat Simple_repeat 2 114 0 2 1517 453 81 0 0 chr6 122210305 122210367 -27306670 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1517 1740 82 81 22 chr6 122210381 122210654 -27306383 - MusHAL1 LINE L1 -871 2482 2194 2 1517 2540 87 0 0 chr6 122210652 122210975 -27306062 - MusHAL1 LINE L1 -3031 323 1 2 1517 2146 109 8 14 chr6 122210978 122211340 -27305697 + RMER6A LTR ERVK 339 698 -58 2 1517 337 234 51 41 chr6 122211515 122211613 -27305424 + MT2B LTR ERVL 156 254 -347 2 1517 614 169 97 0 chr6 122211535 122211659 -27305378 + B1_Mus2 SINE Alu 11 146 -1 2 1517 2978 24 0 0 chr6 122212327 122212659 -27304378 - IAPEY3_LTR LTR ERVK 0 332 1 2 1517 327 25 0 0 chr6 122213196 122213236 -27303801 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1517 612 191 195 35 chr6 122213242 122213535 -27303502 - MT2A LTR ERVL -162 331 33 2 1517 3330 36 15 0 chr6 122213676 122214066 -27302971 + MTA_Mm LTR MaLR 1 396 0 2 1517 25 0 0 0 chr6 122214299 122214324 -27302713 + AT_rich Low_complexity Low_complexity 1 25 0 2 1517 854 283 54 25 chr6 122214443 122214722 -27302315 + B4A SINE B4 2 288 -4 2 1517 290 221 44 0 chr6 122214761 122214829 -27302208 - ORR1D1 LTR MaLR 0 374 304 2 1517 344 268 51 127 chr6 122214806 122214832 -27302205 + B4 SINE B4 72 217 -75 2 1517 714 182 8 0 chr6 122214832 122214964 -27302073 + B1_Mur4 SINE Alu 9 141 -9 2 1517 286 264 42 0 chr6 122214982 122215054 -27301983 - ORR1D1 LTR MaLR -52 322 248 2 1517 1184 219 52 0 chr6 122215105 122215374 -27301663 - ORR1D1 LTR MaLR -91 283 1 2 1517 26 0 0 0 chr6 122215420 122215446 -27301591 + AT_rich Low_complexity Low_complexity 1 26 0 2 1517 7891 98 12 11 chr6 122215456 122217519 -27299518 + L1Md_F LINE L1 208 2269 -3614 2 1517 546 93 31 10 chr6 122217519 122217617 -27299420 + B2_Mm2 SINE B2 90 189 -6 2 1517 2082 160 9 0 chr6 122217669 122218087 -27298950 - RLTR33 LTR ERVK 0 678 216 2 1517 306 196 0 21 chr6 122218087 122218181 -27298856 + Lx6 LINE L1 7343 7434 -26 2 1517 713 216 0 14 chr6 122219114 122219255 -27297782 - ID_B1 SINE B4 0 224 86 2 1517 359 207 53 6 chr6 122219738 122219908 -27297129 + (TA)n Simple_repeat Simple_repeat 1 178 0 2 1517 456 305 153 3 chr6 122220638 122220991 -27296046 - L1MA5 LINE L1 -1 6299 5892 2 1517 192 181 27 27 chr6 122222480 122222554 -27294483 + GA-rich Low_complexity Low_complexity 1 74 0 2 1517 1521 27 0 0 chr6 122222562 122223048 -27293989 + (GAA)n Simple_repeat Simple_repeat 1 486 0 2 1517 323 181 38 9 chr6 122223342 122223448 -27293589 + C-rich Low_complexity Low_complexity 6 114 0 2 1517 393 21 21 0 chr6 122223685 122223733 -27293304 - L1Md_F2 LINE L1 -392 6190 6142 2 1517 3119 42 13 8 chr6 122223733 122224117 -27292920 + L1Md_F2 LINE L1 6196 6581 -1 2 1517 726 12 0 0 chr6 122224162 122224245 -27292792 + (TC)n Simple_repeat Simple_repeat 1 83 0 2 1517 509 299 126 30 chr6 122224259 122224528 -27292509 + MLT1A LTR MaLR 7 301 -73 2 1517 219 295 0 0 chr6 122224843 122224904 -27292133 + (CTG)n Simple_repeat Simple_repeat 3 63 0 2 1517 1218 40 21 98 chr6 122226039 122226233 -27290804 + B2_Mm1a SINE B2 15 193 0 2 1517 305 363 5 43 chr6 122227575 122227723 -27289314 + (CA)n Simple_repeat Simple_repeat 1 144 0 2 1517 1315 90 17 6 chr6 122227723 122227901 -27289136 + B2_Mm2 SINE B2 2 181 -14 2 1517 305 363 5 43 chr6 122227901 122227939 -27289098 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1517 275 211 39 4 chr6 122227983 122228061 -27288976 + B1F1 SINE Alu 41 117 0 2 1517 1389 85 0 41 chr6 122228745 122228942 -27288095 + B2_Mm2 SINE B2 1 189 -6 2 1517 244 359 62 14 chr6 122230005 122230149 -27286888 + L1MC LINE L1 5566 5716 -2166 2 1517 25 0 0 0 chr6 122230529 122230554 -27286483 + AT_rich Low_complexity Low_complexity 1 25 0 2 1517 460 230 71 0 chr6 122230887 122231000 -27286037 + ID_B1 SINE B4 104 224 0 2 1517 635 150 0 70 chr6 122231210 122231339 -27285698 + B1_Mur4 SINE Alu 21 140 -10 2 1517 21 36 0 0 chr6 122231342 122231370 -27285667 + AT_rich Low_complexity Low_complexity 1 28 0 2 1517 950 129 0 0 chr6 122231432 122231564 -27285473 - B1_Mus2 SINE Alu -13 134 3 2 1517 242 279 0 0 chr6 122233903 122233971 -27283066 + L1M3 LINE L1 5774 5841 -342 2 1517 423 231 11 0 chr6 122233977 122234068 -27282969 + PB1D10 SINE Alu 6 97 -20 2 1517 1291 74 79 6 chr6 122234083 122234096 -27282941 - B2_Mm2 SINE B2 -4 191 179 2 1517 240 111 0 0 chr6 122234096 122234132 -27282905 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 2 1517 1291 74 79 6 chr6 122234132 122234295 -27282742 - B2_Mm2 SINE B2 -17 178 3 2 1517 1108 88 0 0 chr6 122234311 122234458 -27282579 - B1_Mus1 SINE Alu 0 148 2 2 1517 895 283 41 54 chr6 122234562 122234831 -27282206 - MTEa LTR MaLR -68 311 43 2 1517 1020 170 124 10 chr6 122234831 122235033 -27282004 - URR1A DNA MER1_type 0 226 2 2 1517 895 283 41 54 chr6 122235033 122235077 -27281960 - MTEa LTR MaLR -337 42 2 2 1517 507 33 0 0 chr6 122235213 122235274 -27281763 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1517 441 0 0 0 chr6 122235274 122235322 -27281715 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1517 966 25 9 4 chr6 122235343 122235481 -27281556 + B1_Mus1 SINE Alu 14 149 0 2 1517 229 264 45 22 chr6 122235493 122235569 -27281468 + L1MEg LINE L1 889 966 -5276 2 1517 1999 126 214 0 chr6 122235569 122235942 -27281095 + RLTR11B LTR ERVK 1 453 0 2 1517 229 264 45 22 chr6 122235942 122235954 -27281083 + L1MEg LINE L1 967 978 -5264 2 1517 931 220 38 0 chr6 122236047 122236256 -27280781 + B4A SINE B4 1 217 -75 2 1517 224 59 29 0 chr6 122236256 122236290 -27280747 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2 1517 509 50 25 0 chr6 122236292 122236372 -27280665 + L1Md_F3 LINE L1 6501 6582 -2 2 1517 216 158 0 0 chr6 122236373 122236411 -27280626 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1517 226 231 58 0 chr6 122236454 122236506 -27280531 + B4A SINE B4 238 292 0 2 1517 233 250 0 0 chr6 122236473 122236525 -27280512 + B3A SINE B2 132 183 -15 2 1517 4033 133 107 63 chr6 122236537 122237384 -27279653 + RMER19B LTR ERVK 1 885 -17 2 1517 1707 21 0 0 chr6 122237385 122237574 -27279463 + B2_Mm1a SINE B2 1 189 -4 2 1517 1206 68 0 0 chr6 122237607 122237755 -27279282 + B1_Mus1 SINE Alu 1 148 0 2 1517 674 239 96 64 chr6 122237872 122238154 -27278883 + B4A SINE B4 2 292 0 2 1517 5503 110 41 11 chr6 122238560 122239405 -27277632 - Lx4A LINE L1 -9 7049 6179 2 1517 350 257 0 0 chr6 122239407 122239481 -27277556 + PB1D10 SINE Alu 18 91 -26 2 1517 324 0 0 0 chr6 122239502 122239538 -27277499 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1517 276 30 0 0 chr6 122239841 122239874 -27277163 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1517 240 328 51 39 chr6 122240586 122240764 -27276273 + L1MEg LINE L1 2585 2764 -3382 2 1517 360 0 0 0 chr6 122240796 122240836 -27276201 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1517 274 326 133 22 chr6 122240854 122240989 -27276048 - RSINE1 SINE B4 -13 152 3 2 1517 352 284 165 33 chr6 122241027 122241421 -27275616 + L1MEg LINE L1 2814 3259 -2887 2 1517 500 235 17 0 chr6 122241481 122241596 -27275441 - B3 SINE B2 -93 123 7 2 1517 371 312 11 0 chr6 122241619 122241712 -27275325 + B1F1 SINE Alu 1 94 -55 2 1517 494 246 98 13 chr6 122241739 122241974 -27275063 + L1M3 LINE L1 3030 3284 -2856 2 1517 1828 173 102 18 chr6 122242198 122242639 -27274398 - RLTR28 LTR ERVL -46 478 1 2 1517 272 233 233 0 chr6 122243183 122243269 -27273768 + RSINE1 SINE B4 3 108 -57 2 1517 240 86 0 0 chr6 122243449 122243484 -27273553 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 2 1517 389 194 74 21 chr6 122244125 122244220 -27272817 - RMER10A LTR ERVL -22 420 321 2 1517 214 202 33 77 chr6 122244291 122244382 -27272655 + GA-rich Low_complexity Low_complexity 1 87 0 2 1517 1395 189 79 40 chr6 122244435 122244476 -27272561 - RMER17C LTR ERVK 0 410 366 2 1517 1448 66 14 41 chr6 122244476 122244696 -27272341 + L1_Mus3 LINE L1 6425 6638 0 2 1517 1395 186 77 22 chr6 122244696 122245066 -27271971 - RMER17C LTR ERVK -519 439 17 2 1517 518 326 28 57 chr6 122245144 122245391 -27271646 + RLTR18 LTR ERVK 1 240 -376 2 1517 240 290 85 57 chr6 122246833 122246939 -27270098 + RLTR18 LTR ERVK 234 342 -170 2 1517 423 0 0 0 chr6 122247005 122247052 -27269985 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1517 255 93 0 0 chr6 122247477 122247520 -27269517 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1517 282 56 0 0 chr6 122248297 122248333 -27268704 + (CCCCCT)n Simple_repeat Simple_repeat 4 39 0 2 1517 465 19 0 0 chr6 122248461 122248515 -27268522 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1517 502 146 42 0 chr6 122248818 122248914 -27268123 - B3 SINE B2 -88 128 29 2 1517 1510 68 0 5 chr6 122249210 122249401 -27267636 - B2_Mm2 SINE B2 -5 190 1 3 1517 690 13 0 0 chr6 122249413 122249492 -27267545 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 3 1517 1007 47 0 0 chr6 122249494 122249623 -27267414 + B1_Mus2 SINE Alu 6 134 -13 3 1517 259 98 39 19 chr6 122250145 122250197 -27266840 + CT-rich Low_complexity Low_complexity 3 55 0 3 1517 1181 91 11 0 chr6 122250199 122250375 -27266662 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3 1517 701 210 7 7 chr6 122250376 122250520 -27266517 - B1_Mur4 SINE Alu -5 145 2 3 1517 638 208 33 59 chr6 122250593 122250792 -27266245 + B3 SINE B2 1 190 -5 3 1517 805 276 57 67 chr6 122250982 122251379 -27265658 + MTE2a LTR MaLR 21 379 0 3 1517 2548 136 43 104 chr6 122251656 122251952 -27265085 + RLTR28B LTR ERVL 1 315 -166 3 1517 1198 55 0 0 chr6 122251952 122252098 -27264939 + B1_Mus1 SINE Alu 3 148 0 3 1517 2548 136 43 104 chr6 122252098 122252310 -27264727 + RLTR28B LTR ERVL 316 478 -3 3 1517 448 214 0 28 chr6 122252329 122252435 -27264602 + PB1D9 SINE Alu 18 120 0 3 1517 873 278 0 5 chr6 122252529 122252742 -27264295 + B3 SINE B2 3 214 -2 3 1517 410 242 92 33 chr6 122253186 122253370 -27263667 + L1MC4 LINE L1 7702 7896 -146 3 1517 383 224 0 12 chr6 122253421 122253507 -27263530 - PB1D10 SINE Alu -5 112 28 3 1517 1375 275 34 19 chr6 122254227 122254639 -27262398 + Lx8 LINE L1 6182 6599 -874 3 1517 836 245 41 33 chr6 122254655 122254900 -27262137 - RMER15 LTR ERVL -12 563 317 3 1517 1237 258 78 19 chr6 122255135 122255506 -27261531 + Lx8 LINE L1 6615 7007 -466 3 1517 658 215 0 6 chr6 122255512 122255648 -27261389 + B1_Mur4 SINE Alu 5 134 -16 3 1517 1230 35 14 0 chr6 122255672 122255816 -27261221 - B1_Mm SINE Alu 0 147 2 3 1517 3037 259 48 30 chr6 122256298 122256335 -27260702 + Lx9 LINE L1 6289 6329 -1315 3 1517 303 28 0 0 chr6 122256335 122256371 -27260666 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1517 3037 259 48 30 chr6 122256371 122257029 -27260008 + Lx9 LINE L1 6330 7018 -626 3 1517 2071 137 60 103 chr6 122257029 122257516 -27259521 - RMER4A LTR ERVK 0 466 1 3 1517 3037 259 48 30 chr6 122257516 122257708 -27259329 + Lx9 LINE L1 7019 7193 -451 3 1517 291 198 243 63 chr6 122257763 122257952 -27259085 + Lx9 LINE L1 7387 7609 -35 3 1517 180 286 0 60 chr6 122260094 122260161 -27256876 + MIRc SINE MIR 76 138 -130 3 1517 232 304 0 0 chr6 122261359 122261428 -27255609 + RMER30 DNA MER1_type 133 201 -1 3 1517 518 216 9 18 chr6 122262008 122262121 -27254916 - PB1D9 SINE Alu -7 113 2 3 1517 1461 69 37 0 chr6 122262447 122262635 -27254402 + B2_Mm2 SINE B2 1 195 0 3 1517 275 336 25 2 chr6 122263634 122263729 -27253308 + ID4 SINE ID 3 98 -54 3 1517 1841 160 93 8 chr6 122264107 122264461 -27252576 - ORR1C2 LTR MaLR 0 384 1 3 1517 484 255 0 9 chr6 122264806 122264917 -27252120 + PB1D10 SINE Alu 2 111 -6 3 1517 320 231 24 49 chr6 122265548 122265630 -27251407 + ID4_ SINE ID 4 83 0 3 1517 271 248 112 56 chr6 122265641 122265748 -27251289 - PB1D9 SINE Alu -7 113 1 3 1517 21 0 0 0 chr6 122267778 122267799 -27249238 + AT_rich Low_complexity Low_complexity 1 21 0 3 1517 251 241 17 0 chr6 122270797 122270855 -27246182 + PB1D9 SINE Alu 62 120 0 3 1517 561 271 37 15 chr6 122271251 122271386 -27245651 - B1_Mur2 SINE Alu -10 139 2 3 1517 402 274 77 0 chr6 122271410 122271527 -27245510 - B3A SINE B2 -72 126 1 3 1517 227 140 20 0 chr6 122272827 122272877 -27244160 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1517 480 77 0 0 chr6 122273599 122273664 -27243373 + (CTG)n Simple_repeat Simple_repeat 1 65 0 3 1517 306 212 0 29 chr6 122274274 122274376 -27242661 + GA-rich Low_complexity Low_complexity 3 101 0 3 1517 183 42 0 0 chr6 122275350 122275374 -27241663 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1517 413 322 0 53 chr6 122275984 122276226 -27240811 + (TATATG)n Simple_repeat Simple_repeat 1 229 0 3 1517 202 347 56 0 chr6 122276429 122276501 -27240536 - L2a LINE L2 -2 3424 3349 3 1517 25 31 0 0 chr6 122277228 122277260 -27239777 + AT_rich Low_complexity Low_complexity 1 32 0 3 1517 276 241 87 26 chr6 122277314 122277429 -27239608 + PB1 SINE Alu 4 125 -2 3 1517 307 200 26 26 chr6 122277872 122277949 -27239088 - ID4_ SINE ID -4 79 3 3 1517 240 266 0 59 chr6 122277967 122278035 -27239002 + B3A SINE B2 9 72 -126 3 1517 24 0 0 0 chr6 122278081 122278105 -27238932 + AT_rich Low_complexity Low_complexity 1 24 0 3 1517 279 0 0 0 chr6 122278245 122278276 -27238761 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1517 629 267 49 94 chr6 122278347 122278591 -27238446 - B4 SINE B4 -50 242 10 3 1517 1091 95 0 0 chr6 122279478 122279625 -27237412 - B1_Mus1 SINE Alu -1 147 1 3 1517 237 292 58 58 chr6 122279680 122279818 -27237219 + L2b LINE L2 2343 2480 -939 3 1517 207 343 149 17 chr6 122280196 122280371 -27236666 + L2b LINE L2 2989 3186 -189 3 1517 372 103 0 0 chr6 122280765 122280823 -27236214 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 3 1517 210 37 0 0 chr6 122280862 122280889 -27236148 + (TGGA)n Simple_repeat Simple_repeat 3 29 0 3 1517 1414 78 16 0 chr6 122281031 122281223 -27235814 - B2_Mm2 SINE B2 0 195 1 3 1517 252 0 0 0 chr6 122281358 122281386 -27235651 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1517 650 156 31 0 chr6 122281391 122281520 -27235517 - B1_Mur3 SINE Alu -7 143 1 3 1517 200 250 18 18 chr6 122282700 122282757 -27234280 + GA-rich Low_complexity Low_complexity 1 57 0 3 1517 308 215 1 0 chr6 122283159 122283234 -27233803 + ID4 SINE ID 7 82 -70 3 1517 351 236 39 18 chr6 122283818 122283936 -27233101 + PB1D7 SINE Alu 2 121 -26 3 1517 366 259 0 0 chr6 122284710 122284798 -27232239 - MER33 DNA MER1_type -87 122 1 3 1517 433 257 18 9 chr6 122285419 122285533 -27231504 + PB1D10 SINE Alu 1 115 -2 3 1517 1490 73 11 0 chr6 122285852 122286043 -27230994 + B2_Mm1t SINE B2 1 193 0 3 1517 296 291 12 107 chr6 122286183 122286352 -27230685 + ID_B1 SINE B4 1 153 -71 3 1517 244 250 0 32 chr6 122286409 122286471 -27230566 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1517 288 196 0 0 chr6 122286637 122286688 -27230349 - PB1 SINE Alu -1 126 76 3 1517 245 246 0 47 chr6 122286638 122286702 -27230335 - ID_B1 SINE B4 -3 221 161 3 1517 23 33 0 0 chr6 122289581 122289611 -27227426 + GC_rich Low_complexity Low_complexity 1 30 0 3 1517 23 78 0 0 chr6 122289664 122289715 -27227322 + GC_rich Low_complexity Low_complexity 1 51 0 3 1517 33 103 0 0 chr6 122289731 122289848 -27227189 + GC_rich Low_complexity Low_complexity 1 117 0 3 1517 31 58 0 0 chr6 122289859 122289911 -27227126 + GC_rich Low_complexity Low_complexity 1 52 0 3 1517 201 189 38 0 chr6 122289942 122289995 -27227042 + C-rich Low_complexity Low_complexity 3 57 0 3 1517 215 321 25 0 chr6 122290067 122290148 -27226889 + CT-rich Low_complexity Low_complexity 2 84 0 3 1518 534 103 0 0 chr6 122291959 122292037 -27225000 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 1518 181 182 36 0 chr6 122292164 122292219 -27224818 + CT-rich Low_complexity Low_complexity 4 60 0 3 1518 1166 30 0 0 chr6 122292778 122292913 -27224124 - B1_Mus2 SINE Alu -9 138 4 3 1518 505 316 25 69 chr6 122294018 122294076 -27222961 + MLT1D LTR MaLR 251 311 -194 3 1518 902 119 261 38 chr6 122294076 122294260 -27222777 + URR1A DNA MER1_type 1 225 -1 3 1518 505 316 25 69 chr6 122294260 122294446 -27222591 + MLT1D LTR MaLR 312 484 -21 3 1518 315 311 81 71 chr6 122294465 122294676 -27222361 + Tigger7 DNA MER2_type 57 269 -2222 3 1518 21 0 0 0 chr6 122294732 122294753 -27222284 + AT_rich Low_complexity Low_complexity 1 21 0 3 1518 364 173 0 24 chr6 122295074 122295157 -27221880 + PB1D9 SINE Alu 40 120 0 3 1518 310 200 222 0 chr6 122295373 122295463 -27221574 - PB1D7 SINE Alu -8 112 3 3 1518 620 272 156 24 chr6 122296022 122296350 -27220687 + Tigger7 DNA MER2_type 2113 2483 -8 3 1518 364 271 154 33 chr6 122296451 122296691 -27220346 - LTR37B LTR ERV1 -4 464 196 3 1518 1261 41 0 0 chr6 122296729 122296876 -27220161 + B1_Mus2 SINE Alu 1 147 0 3 1518 1013 217 40 0 chr6 122297716 122297914 -27219123 + B3 SINE B2 1 206 -10 3 1518 466 122 14 0 chr6 122298425 122298499 -27218538 + B3 SINE B2 4 78 -138 3 1518 359 205 259 0 chr6 122298635 122298747 -27218290 - ID_B1 SINE B4 -2 222 82 3 1518 369 0 0 0 chr6 122298764 122298805 -27218232 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1518 702 234 23 28 chr6 122298824 122299000 -27218037 - B4A SINE B4 0 292 118 3 1518 189 107 0 0 chr6 122299052 122299080 -27217957 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1518 810 137 143 40 chr6 122299613 122299788 -27217249 - B2_Mm2 SINE B2 -2 193 1 3 1518 417 326 110 64 chr6 122300194 122300476 -27216561 + MLT1I LTR MaLR 47 341 -70 3 1518 285 272 59 81 chr6 122300490 122300626 -27216411 + ORR1E LTR MaLR 1 133 -226 3 1518 343 133 0 105 chr6 122301141 122301217 -27215820 + MTD LTR MaLR 14 79 -342 3 1518 1044 94 12 6 chr6 122301218 122301378 -27215659 + B2_Mm2 SINE B2 1 161 -34 3 1518 189 0 0 0 chr6 122301378 122301399 -27215638 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 3 1518 186 191 0 0 chr6 122301452 122301499 -27215538 + T-rich Low_complexity Low_complexity 1 47 0 3 1518 5228 113 53 15 chr6 122301502 122302308 -27214729 - Lx4A LINE L1 0 7058 6222 3 1518 869 240 56 138 chr6 122302336 122302655 -27214382 + MTD LTR MaLR 116 408 -11 3 1518 239 71 24 0 chr6 122302666 122302708 -27214329 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1518 1145 56 21 0 chr6 122302708 122302852 -27214185 - B1_Mm SINE Alu 0 147 1 3 1518 305 255 54 29 chr6 122303174 122303303 -27213734 - B1F2 SINE Alu 0 127 1 3 1518 1883 145 81 6 chr6 122303346 122303680 -27213357 + RLTR15 LTR ERVK 1 359 0 3 1518 239 0 32 0 chr6 122304056 122304087 -27212950 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 1518 414 173 13 0 chr6 122304179 122304254 -27212783 + MER34A1 LTR ERV1 17 92 -495 3 1518 1056 82 0 7 chr6 122304255 122304403 -27212634 + B1_Mus2 SINE Alu 1 147 0 4 1518 288 0 0 0 chr6 122304604 122304636 -27212401 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 1518 863 35 0 9 chr6 122304692 122304806 -27212231 + B1_Mus1 SINE Alu 35 147 -1 4 1518 686 152 64 0 chr6 122305315 122305440 -27211597 - RMER1B Other Other 0 1066 934 4 1518 472 213 72 20 chr6 122305451 122305621 -27211416 + B2_Mm2 SINE B2 7 179 -14 4 1518 180 77 0 0 chr6 122305628 122305654 -27211383 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 4 1518 1210 34 7 7 chr6 122305693 122305841 -27211196 + B1_Mus1 SINE Alu 1 148 0 4 1518 225 196 0 0 chr6 122305841 122305887 -27211150 + A-rich Low_complexity Low_complexity 1 46 0 4 1518 2178 265 73 29 chr6 122305888 122306543 -27210494 - RMER1A Other Other -357 673 33 4 1518 2378 137 34 8 chr6 122306864 122307248 -27209789 - ORR1B1 LTR MaLR 0 394 1 4 1518 6370 176 48 86 chr6 122307248 122308816 -27208221 - ORR1B1-int LTR MaLR 0 1509 1 4 1518 439 54 0 0 chr6 122308816 122308872 -27208165 - ORR1B1 LTR MaLR 0 329 274 4 1518 228 35 0 0 chr6 122308872 122308901 -27208136 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1518 665 35 0 0 chr6 122308901 122308986 -27208051 - B1_Mm SINE Alu -9 138 54 4 1518 2007 105 86 0 chr6 122308984 122309309 -27207728 - ORR1B1 LTR MaLR -41 353 1 4 1518 265 301 34 67 chr6 122309380 122309469 -27207568 - PB1D7 SINE Alu -11 109 24 4 1518 1265 227 72 36 chr6 122310137 122310470 -27206567 - ORR1D1 LTR MaLR -1 373 29 4 1518 1154 68 7 0 chr6 122310536 122310682 -27206355 - B1_Mm SINE Alu 0 147 1 4 1518 735 174 14 0 chr6 122311400 122311538 -27205499 - RMER15 LTR ERVL -78 497 358 4 1518 514 233 0 33 chr6 122311557 122311677 -27205360 - RMER13A LTR ERVK 0 860 745 4 1518 525 302 118 76 chr6 122311690 122312289 -27204748 - L1_Mur3 LINE L1 -2415 3465 2846 4 1518 780 184 7 14 chr6 122312289 122312432 -27204605 - B1_Mur2 SINE Alu -7 142 1 4 1518 525 302 118 76 chr6 122312432 122312530 -27204507 - L1_Mur3 LINE L1 -3035 2845 2739 4 1518 1202 48 7 0 chr6 122312569 122312715 -27204322 + B1_Mm SINE Alu 1 147 0 4 1518 670 172 66 0 chr6 122312728 122312850 -27204187 - B1_Mur4 SINE Alu -13 137 8 4 1518 2365 164 81 81 chr6 122312850 122313434 -27203603 - RLTR31A_Mm LTR ERVK 0 584 1 4 1518 2227 273 68 81 chr6 122313442 122313899 -27203138 - L1_Rod LINE L1 -3166 2681 2220 4 1518 1111 102 0 0 chr6 122313899 122314046 -27202991 - B1_Mus1 SINE Alu 0 148 2 4 1518 2227 273 68 81 chr6 122314046 122314942 -27202095 - L1_Rod LINE L1 -3628 2219 1346 4 1518 1262 162 83 73 chr6 122315788 122316237 -27200800 + RMER17C LTR ERVK 16 439 -519 4 1518 337 209 0 197 chr6 122317985 122318122 -27198915 + ORR1E LTR MaLR 90 199 -160 4 1518 284 273 20 84 chr6 122318153 122318289 -27198748 - PB1 SINE Alu -2 147 1 4 1518 300 27 0 0 chr6 122318754 122318791 -27198246 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1518 1228 61 0 0 chr6 122318841 122318989 -27198048 - B1_Mus1 SINE Alu 0 148 1 4 1518 1623 38 0 0 chr6 122319784 122319969 -27197068 - B2_Mm1a SINE B2 -7 186 2 4 1518 390 325 118 27 chr6 122319973 122320145 -27196892 + L1M5 LINE L1 4530 4710 -1436 4 1518 557 259 6 110 chr6 122320145 122320327 -27196710 + RSINE1 SINE B4 3 165 0 4 1518 390 325 118 27 chr6 122320327 122320603 -27196434 + L1M5 LINE L1 4711 5019 -1127 4 1518 580 264 167 61 chr6 122320697 122321105 -27195932 - RLTR12B LTR ERVK -31 497 47 4 1518 407 273 9 9 chr6 122321276 122321387 -27195650 + PB1D9 SINE Alu 10 120 0 4 1518 771 186 54 43 chr6 122321673 122321858 -27195179 - B2_Mm2 SINE B2 -8 187 1 4 1518 33 0 0 0 chr6 122322010 122322043 -27194994 + AT_rich Low_complexity Low_complexity 1 33 0 4 1518 953 248 13 17 chr6 122322050 122322280 -27194757 + B4 SINE B4 1 229 -63 4 1518 418 162 14 0 chr6 122322442 122322516 -27194521 + PB1D10 SINE Alu 25 99 -18 4 1518 28 29 0 0 chr6 122322692 122322727 -27194310 + AT_rich Low_complexity Low_complexity 1 35 0 4 1518 284 281 52 0 chr6 122323372 122323468 -27193569 + G-rich Low_complexity Low_complexity 5 105 0 4 1518 521 318 71 50 chr6 122324196 122324261 -27192776 + LTR83 LTR ERVL 9 70 -710 4 1518 869 50 321 0 chr6 122324261 122324401 -27192636 - B2_Mm2 SINE B2 -10 185 1 4 1518 521 318 71 50 chr6 122324401 122324616 -27192421 + LTR83 LTR ERVL 71 295 -485 4 1518 1005 78 7 0 chr6 122324724 122324866 -27192171 + RLTRETN_Mm LTR ERVK 180 322 0 4 1518 381 22 0 0 chr6 122324965 122325011 -27192026 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1518 537 94 0 0 chr6 122325011 122325096 -27191941 + (GA)n Simple_repeat Simple_repeat 2 86 0 4 1518 374 172 51 0 chr6 122325106 122325263 -27191774 + (CAGA)n Simple_repeat Simple_repeat 2 166 0 4 1518 261 0 0 0 chr6 122325376 122325405 -27191632 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1518 770 135 97 8 chr6 122325647 122325781 -27191256 + B1_Mur2 SINE Alu 2 147 -2 4 1518 21 57 0 0 chr6 122325844 122325879 -27191158 + AT_rich Low_complexity Low_complexity 1 35 0 4 1518 1672 32 0 0 chr6 122325927 122326117 -27190920 - B2_Mm1a SINE B2 -2 191 2 4 1518 2015 129 18 11 chr6 122326390 122326928 -27190109 + RMER6D LTR ERVK 1 690 0 4 1518 289 163 0 0 chr6 122326928 122326977 -27190060 - ID4 SINE ID -21 62 14 4 1518 225 0 0 0 chr6 122326992 122327017 -27190020 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 4 1518 657 175 30 53 chr6 122327024 122327051 -27189986 - B1_Mus1 SINE Alu -18 130 110 4 1518 1927 217 62 52 chr6 122327051 122327257 -27189780 + RLTR31A_Mm LTR ERVK 1 207 -377 4 1518 1356 55 55 0 chr6 122327257 122327439 -27189598 + B2_Mm2 SINE B2 1 192 -3 4 1518 1927 217 62 52 chr6 122327439 122327810 -27189227 + RLTR31A_Mm LTR ERVK 208 584 0 4 1518 657 175 30 53 chr6 122327810 122327915 -27189122 - B1_Mus1 SINE Alu -39 109 1 4 1518 264 346 49 10 chr6 122327915 122327949 -27189088 - B4A SINE B4 -208 84 47 4 1518 1169 48 0 40 chr6 122328156 122328308 -27188729 - B1_Mus2 SINE Alu -1 146 1 4 1518 326 247 56 11 chr6 122328308 122328398 -27188639 + RMER2 LTR ERV1 23 116 -451 4 1518 483 177 43 72 chr6 122328504 122328711 -27188326 - RMER17C LTR ERVK -135 275 75 4 1518 603 0 0 0 chr6 122328778 122328845 -27188192 + (CTTG)n Simple_repeat Simple_repeat 2 68 0 4 1518 316 215 15 0 chr6 122329441 122329506 -27187531 - B1_Mur3 SINE Alu -83 66 1 4 1518 2054 186 54 20 chr6 122329712 122330117 -27186920 - MTD LTR MaLR 0 419 1 4 1518 1338 146 32 9 chr6 122330137 122330174 -27186863 + URR1A DNA MER1_type 1 37 -189 4 1518 312 27 0 0 chr6 122330174 122330211 -27186826 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1518 1338 146 32 9 chr6 122330211 122330394 -27186643 + URR1A DNA MER1_type 38 226 0 4 1518 1115 68 0 64 chr6 122330414 122330570 -27186467 - B1_Mus1 SINE Alu -1 147 2 4 1518 976 245 108 50 chr6 122330603 122330964 -27186073 + RLTR14 LTR ERV1 1 382 0 4 1518 1123 80 0 0 chr6 122332424 122332562 -27184475 + B1_Mus2 SINE Alu 1 138 -9 4 1518 193 302 95 0 chr6 122332667 122332730 -27184307 - MER5A DNA MER1_type -115 74 6 4 1518 192 206 26 117 chr6 122332731 122332808 -27184229 - MIR SINE MIR -60 148 79 4 1518 747 92 0 0 chr6 122333791 122333900 -27183137 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 4 1518 417 227 62 0 chr6 122333991 122334088 -27182949 + B2_Mm2 SINE B2 1 103 -92 4 1518 1519 195 49 15 chr6 122334067 122334510 -27182527 + RMER17C LTR ERVK 16 437 -521 4 1518 345 207 0 17 chr6 122334510 122334578 -27182459 + B3 SINE B2 89 154 -44 4 1518 354 45 0 0 chr6 122334578 122334622 -27182415 + (CAGA)n Simple_repeat Simple_repeat 4 47 0 4 1518 296 291 0 60 chr6 122334622 122334637 -27182400 + B3A SINE B2 155 169 -29 4 1518 180 0 0 0 chr6 122334637 122334657 -27182380 + (CAAAC)n Simple_repeat Simple_repeat 4 23 0 4 1518 724 263 0 23 chr6 122335645 122335820 -27181217 - B3A SINE B2 -5 193 23 4 1518 824 148 7 0 chr6 122336294 122336449 -27180588 + CT-rich Low_complexity Low_complexity 2 157 0 4 1518 342 278 61 45 chr6 122336560 122336692 -27180345 - B1F2 SINE Alu -1 148 15 4 1518 472 132 142 19 chr6 122336982 122337188 -27179849 - IAPLTR2_Mm LTR ERVK -8 467 217 4 1518 335 174 0 11 chr6 122337192 122337279 -27179758 + GA-rich Low_complexity Low_complexity 2 87 0 4 1518 1472 126 46 0 chr6 122337279 122337540 -27179497 - IAPLTR2_Mm LTR ERVK -202 273 1 4 1518 272 262 24 36 chr6 122338470 122338553 -27178484 - ID4_ SINE ID 0 83 2 4 1518 439 307 83 87 chr6 122338554 122338843 -27178194 + MLT1F2 LTR MaLR 97 384 -176 4 1518 535 282 21 0 chr6 122338879 122339021 -27178016 + ID_B1 SINE B4 74 218 -6 4 1518 819 191 103 11 chr6 122339147 122339332 -27177705 + B3 SINE B2 1 202 -14 4 1518 306 0 0 0 chr6 122339332 122339366 -27177671 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 4 1518 3472 131 81 40 chr6 122339367 122339925 -27177112 + RMER6A LTR ERVK 1 581 -175 4 1518 2086 19 113 51 chr6 122339925 122340200 -27176837 - RLTR10B LTR ERVK 0 292 1 4 1518 3472 131 81 40 chr6 122340200 122340367 -27176670 + RMER6A LTR ERVK 582 756 0 4 1518 1290 88 5 57 chr6 122340390 122340583 -27176454 + B2_Mm1a SINE B2 2 184 -9 4 1518 270 319 59 7 chr6 122340997 122341133 -27175904 + B1F1 SINE Alu 5 147 -2 4 1518 183 80 0 0 chr6 122341299 122341324 -27175713 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 4 1518 237 210 0 0 chr6 122342812 122342874 -27174163 + GA-rich Low_complexity Low_complexity 2 63 0 4 1518 585 180 0 113 chr6 122343068 122343218 -27173819 - B1_Mus1 SINE Alu -14 134 2 4 1518 814 184 7 7 chr6 122344673 122344821 -27172216 + B1_Mur4 SINE Alu 1 148 -2 4 1518 277 271 14 41 chr6 122344852 122344925 -27172112 + RSINE1 SINE B4 67 137 -28 4 1518 441 0 0 0 chr6 122344927 122344976 -27172061 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1518 334 302 34 17 chr6 122345494 122345612 -27171425 - PB1D7 SINE Alu 0 120 1 4 1518 580 236 14 41 chr6 122345620 122345690 -27171347 - ID_B1 SINE B4 -3 221 152 4 1518 1754 170 13 155 chr6 122345690 122346149 -27170888 - ORR1B1 LTR MaLR 0 394 1 4 1518 580 236 14 41 chr6 122346149 122346224 -27170813 - ID_B1 SINE B4 -73 151 80 4 1518 913 50 24 30 chr6 122346551 122346716 -27170321 + (GGGAGA)n Simple_repeat Simple_repeat 3 166 0 5 1518 1218 153 10 0 chr6 122346716 122346919 -27170118 - RMER10A LTR ERVL -237 205 1 5 1518 248 253 11 0 chr6 122346960 122347051 -27169986 + GA-rich Low_complexity Low_complexity 3 94 0 5 1518 414 0 0 0 chr6 122348076 122348122 -27168915 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1518 243 0 0 0 chr6 122348393 122348420 -27168617 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1518 527 203 126 8 chr6 122348423 122348542 -27168495 - B1_Mus2 SINE Alu -6 141 9 5 1518 29 0 0 0 chr6 122348677 122348706 -27168331 + AT_rich Low_complexity Low_complexity 1 29 0 5 1518 314 289 0 28 chr6 122348898 122349005 -27168032 - ID_B1 SINE B4 -39 185 82 5 1518 646 245 0 50 chr6 122349846 122350005 -27167032 + B3 SINE B2 1 151 -65 5 1518 23 33 0 0 chr6 122350005 122350035 -27167002 + AT_rich Low_complexity Low_complexity 1 30 0 5 1518 22 0 0 0 chr6 122350247 122350269 -27166768 + AT_rich Low_complexity Low_complexity 1 22 0 5 1518 575 215 65 26 chr6 122351281 122351434 -27165603 + RSINE1 SINE B4 3 161 -4 5 1518 492 215 12 6 chr6 122351697 122351861 -27165176 + (TG)n Simple_repeat Simple_repeat 1 165 0 5 1518 212 219 30 30 chr6 122351872 122351938 -27165099 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1518 765 211 38 19 chr6 122351940 122352099 -27164938 - RSINE1 SINE B4 -1 164 3 5 1518 239 257 29 0 chr6 122352816 122352886 -27164151 + ID4 SINE ID 11 82 -1 5 1518 509 55 14 0 chr6 122353068 122353141 -27163896 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 5 1518 1222 61 0 0 chr6 122353143 122353291 -27163746 - B1_Mus1 SINE Alu 0 148 1 5 1518 703 191 7 0 chr6 122353293 122353429 -27163608 - B1_Mus2 SINE Alu 0 147 11 5 1518 10053 87 27 7 chr6 122353627 122353751 -27163286 - Lx2A1 LINE L1 -1 7007 6859 5 1518 222 37 0 0 chr6 122353751 122353778 -27163259 + (CCCA)n Simple_repeat Simple_repeat 1 27 0 5 1518 10053 87 27 7 chr6 122353778 122355045 -27161992 - Lx2A1 LINE L1 -150 6858 5588 5 1518 2329 130 0 3 chr6 122355066 122355414 -27161623 + L1_Mm LINE L1 5228 5574 -309 5 1518 535 237 170 28 chr6 122355418 122355448 -27161589 - B3 SINE B2 -6 210 182 5 1518 243 88 0 0 chr6 122355448 122355482 -27161555 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1518 535 237 170 28 chr6 122355482 122355633 -27161404 - B3 SINE B2 -35 181 3 5 1518 5237 137 23 26 chr6 122356374 122357254 -27159783 - L1_Mur2 LINE L1 -831 5046 4170 5 1518 6442 167 55 22 chr6 122357255 122358462 -27158575 + Lx5 LINE L1 5805 7050 0 5 1518 1031 60 75 0 chr6 122358614 122358748 -27158289 + B1_Mus2 SINE Alu 1 144 -3 5 1518 24 0 0 0 chr6 122358748 122358772 -27158265 + AT_rich Low_complexity Low_complexity 1 24 0 5 1518 239 269 51 0 chr6 122359974 122360052 -27156985 + PB1D9 SINE Alu 1 82 -38 5 1518 523 254 31 0 chr6 122359982 122360112 -27156925 + ID_B1 SINE B4 90 223 -1 5 1518 971 187 7 3 chr6 122360112 122360409 -27156628 + GA-rich Low_complexity Low_complexity 1 297 0 5 1518 271 253 35 24 chr6 122361102 122361187 -27155850 + B2_Mm1a SINE B2 32 117 -76 5 1518 577 259 6 48 chr6 122361475 122361641 -27155396 + RSINE1 SINE B4 3 161 -4 5 1518 449 255 48 10 chr6 122361704 122361807 -27155230 + PB1D10 SINE Alu 2 108 -9 5 1518 600 210 28 28 chr6 122361846 122361988 -27155049 + B3 SINE B2 2 143 -73 5 1518 247 325 121 59 chr6 122362036 122362376 -27154661 + L1MCc LINE L1 970 1330 -5093 5 1518 1183 29 0 0 chr6 122362455 122362591 -27154446 + B1_Mm SINE Alu 2 137 -10 5 1518 413 19 19 0 chr6 122362591 122362645 -27154392 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 5 1518 369 254 176 8 chr6 122362647 122362766 -27154271 + B1F1 SINE Alu 2 140 -9 5 1518 23 0 0 0 chr6 122362772 122362795 -27154242 + AT_rich Low_complexity Low_complexity 1 23 0 5 1518 437 267 52 0 chr6 122362844 122362960 -27154077 - RSINE1 SINE B4 -41 124 3 5 1518 231 273 35 70 chr6 122362991 122363133 -27153904 + BC1_Mm scRNA scRNA 1 137 -15 5 1518 463 289 36 6 chr6 122363139 122363306 -27153731 + L1MCc LINE L1 1364 1535 -4888 5 1518 249 196 0 19 chr6 122363364 122363416 -27153621 + GA-rich Low_complexity Low_complexity 1 51 0 5 1518 594 286 53 39 chr6 122363634 122363841 -27153196 + ID_B1 SINE B4 1 210 -14 5 1518 414 0 0 0 chr6 122363848 122363894 -27153143 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 5 1518 281 302 89 58 chr6 122363894 122364084 -27152953 + L1MCc LINE L1 2012 2207 -4830 5 1518 26 0 0 0 chr6 122364692 122364718 -27152319 + AT_rich Low_complexity Low_complexity 1 26 0 5 1518 216 0 0 0 chr6 122364892 122364916 -27152121 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 5 1518 648 254 28 98 chr6 122364916 122365130 -27151907 - B3 SINE B2 -16 200 2 5 1518 435 19 0 0 chr6 122365173 122365225 -27151812 + (CAGGG)n Simple_repeat Simple_repeat 2 53 0 5 1518 201 74 0 0 chr6 122365720 122365747 -27151290 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1518 1940 121 20 61 chr6 122365899 122366242 -27150795 - ORR1A4 LTR MaLR 0 329 1 5 1518 240 298 98 61 chr6 122366322 122366454 -27150583 - MER5A DNA MER1_type -52 137 1 5 1518 318 87 0 0 chr6 122367079 122367125 -27149912 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1518 244 136 221 29 chr6 122367556 122367624 -27149413 - ID4 SINE ID -2 81 1 5 1518 299 322 44 119 chr6 122367697 122367990 -27149047 + ORR1E LTR MaLR 89 359 0 5 1518 1341 72 38 16 chr6 122368585 122368769 -27148268 + B2_Mm2 SINE B2 1 188 -7 5 1518 1224 48 7 0 chr6 122368779 122368925 -27148112 + B1_Mus2 SINE Alu 1 147 0 5 1518 418 273 76 88 chr6 122369001 122369250 -27147787 + L1MA6 LINE L1 5509 5754 -537 5 1518 234 260 28 74 chr6 122369281 122369389 -27147648 + L1MA6 LINE L1 5872 5974 -326 5 1518 423 229 81 0 chr6 122369394 122369514 -27147523 - L1M2 LINE L1 -641 5659 5525 5 1518 570 35 11 23 chr6 122369633 122369720 -27147317 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 5 1518 21 0 0 0 chr6 122369799 122369820 -27147217 + AT_rich Low_complexity Low_complexity 1 21 0 5 1518 831 309 75 80 chr6 122369877 122370253 -27146784 - MTE2b LTR MaLR 0 379 6 5 1518 873 161 15 0 chr6 122370295 122370432 -27146605 + B1_Mus2 SINE Alu 2 140 -7 5 1518 1592 47 0 21 chr6 122370441 122370635 -27146402 + B2_Mm1t SINE B2 1 190 -3 5 1518 579 24 23 23 chr6 122370643 122370729 -27146308 + (GAAAA)n Simple_repeat Simple_repeat 5 90 0 5 1518 785 76 85 0 chr6 122370760 122370878 -27146159 + B1_Mm SINE Alu 9 136 -11 5 1518 309 26 0 0 chr6 122370878 122370916 -27146121 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1518 638 194 153 0 chr6 122371349 122371473 -27145564 + B1_Mur3 SINE Alu 2 144 -5 5 1518 698 132 0 16 chr6 122371475 122371598 -27145439 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 5 1518 837 297 14 0 chr6 122371648 122371860 -27145177 + B3 SINE B2 1 215 -1 5 1518 236 181 88 14 chr6 122371966 122372047 -27144990 + L1MA4A LINE L1 2152 2308 -2308 5 1518 2116 103 3 15 chr6 122372220 122372545 -27144492 + ORR1A4 LTR MaLR 1 321 -8 5 1518 553 196 196 0 chr6 122373199 122373337 -27143700 + RMER6C LTR ERVK 1 165 -525 5 1518 1749 158 109 19 chr6 122373950 122374381 -27142656 + RMER6C LTR ERVK 221 690 0 5 1518 11618 133 41 44 chr6 122374381 122374788 -27142249 + RMER6-int LTR ERVK 1 395 -2782 5 1518 1390 94 21 0 chr6 122374788 122374979 -27142058 + B2_Mm2 SINE B2 1 195 0 5 1518 11618 133 41 44 chr6 122374979 122375772 -27141265 + RMER6-int LTR ERVK 396 1202 -1975 5 1518 2246 207 19 108 chr6 122375772 122376442 -27140595 + RMER19C LTR ERVK 1 611 0 5 1518 11618 133 41 44 chr6 122376442 122377232 -27139805 + RMER6-int LTR ERVK 1203 1986 -1191 5 1518 325 274 62 16 chr6 122377942 122378090 -27138947 + L1MA4A LINE L1 3547 3700 -3148 5 1518 303 260 18 55 chr6 122378103 122378213 -27138824 + ORR1E LTR MaLR 8 113 -246 5 1518 510 167 203 62 chr6 122378214 122378342 -27138695 + B1_Mus1 SINE Alu 3 148 0 5 1518 449 305 71 75 chr6 122378348 122378603 -27138434 + ORR1E LTR MaLR 98 351 -8 5 1518 342 276 39 107 chr6 122378612 122378718 -27138319 + L1MA4A LINE L1 3720 3823 -3022 5 1518 654 297 34 11 chr6 122378718 122378895 -27138142 + B3A SINE B2 2 182 -16 5 1518 342 276 39 107 chr6 122378895 122379014 -27138023 + L1MA4A LINE L1 3824 3927 -2918 5 1518 1439 48 15 36 chr6 122379014 122379050 -27137987 - B2_Mm1a SINE B2 0 193 161 5 1518 222 37 0 0 chr6 122379050 122379077 -27137960 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 1518 1439 48 15 36 chr6 122379077 122379236 -27137801 - B2_Mm1a SINE B2 -33 160 2 5 1518 342 276 39 107 chr6 122379236 122379317 -27137720 + L1MA4A LINE L1 3928 4006 -2839 5 1518 1125 198 20 20 chr6 122379765 122380034 -27137003 + ORR1D1 LTR MaLR 122 374 0 5 1518 9325 114 42 31 chr6 122380052 122381660 -27135377 + L1Md_T LINE L1 3961 5586 -297 5 1518 8700 29 0 0 chr6 122381660 122382656 -27134381 + L1Md_T LINE L1 5587 6582 0 5 1518 1467 154 8 8 chr6 122382689 122382951 -27134086 + RMER19C LTR ERVK 350 611 0 5 1518 821 136 0 22 chr6 122382954 122383089 -27133948 - B1_Mur4 SINE Alu -17 133 2 5 1518 451 313 122 17 chr6 122383131 122383433 -27133604 + L1MA4A LINE L1 5544 5877 -968 5 1518 375 23 0 0 chr6 122383437 122383481 -27133556 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1518 453 169 0 0 chr6 122383542 122383625 -27133412 + GA-rich Low_complexity Low_complexity 2 84 0 5 1518 280 217 62 52 chr6 122383653 122383750 -27133287 + L1_Mur3 LINE L1 5360 5457 -423 5 1518 564 269 99 10 chr6 122383751 122384020 -27133017 + L1MA4A LINE L1 6346 6636 -366 5 1518 570 29 0 0 chr6 122384026 122384094 -27132943 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1518 1461 270 21 29 chr6 122384167 122384587 -27132450 - MTD LTR MaLR -2 417 1 5 1518 181 113 47 70 chr6 122384612 122384698 -27132339 + (GTGTG)n Simple_repeat Simple_repeat 1 84 0 5 1518 448 141 68 0 chr6 122384678 122384841 -27132196 + (TG)n Simple_repeat Simple_repeat 2 175 0 5 1518 189 0 0 0 chr6 122385321 122385342 -27131695 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1518 937 167 71 67 chr6 122385453 122385677 -27131360 - URR1A DNA MER1_type 0 226 2 5 1518 271 306 36 36 chr6 122385705 122385817 -27131220 - B1F2 SINE Alu -31 118 7 5 1518 408 277 43 21 chr6 122385719 122385859 -27131178 - ID_B1 SINE B4 -38 186 44 5 1518 522 206 0 113 chr6 122386684 122386843 -27130194 - L1M3 LINE L1 -1499 4641 4501 5 1518 364 108 19 209 chr6 122386843 122386948 -27130089 - B1_Mus2 SINE Alu -64 85 1 5 1518 2107 87 47 80 chr6 122387269 122387608 -27129429 - ORR1A4 LTR MaLR -1 328 1 5 1518 366 296 67 22 chr6 122387621 122387756 -27129281 - B3A SINE B2 -56 142 2 5 1518 594 0 0 0 chr6 122389248 122389314 -27127723 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1518 348 188 14 0 chr6 122389325 122389394 -27127643 - B1_Mus1 SINE Alu -48 100 31 5 1518 596 180 49 73 chr6 122389407 122389558 -27127479 + B3 SINE B2 53 215 -1 6 1518 216 97 0 0 chr6 122389562 122389593 -27127444 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6 1518 1213 62 0 0 chr6 122389594 122389740 -27127297 - B1_Mus1 SINE Alu 0 148 3 6 1518 699 184 13 33 chr6 122390034 122390186 -27126851 - B1_Mur2 SINE Alu 0 149 1 6 1518 621 246 0 8 chr6 122391033 122391156 -27125881 - B1_Mur4 SINE Alu -21 129 8 6 1518 1200 97 36 36 chr6 122391462 122391655 -27125382 + B2_Mm2 SINE B2 3 195 0 6 1518 574 240 8 0 chr6 122391783 122391908 -27125129 + ID_B1 SINE B4 92 217 -7 6 1518 452 308 0 0 chr6 122391947 122392067 -27124970 + ID_B1 SINE B4 105 224 0 6 1518 1058 215 27 14 chr6 122392134 122392356 -27124681 - URR1B DNA MER1_type 0 225 1 6 1518 432 275 50 55 chr6 122392517 122392736 -27124301 + L1MB1 LINE L1 5598 5815 -353 6 1518 583 136 0 28 chr6 122392745 122392851 -27124186 - B1_Mus2 SINE Alu -2 145 43 6 1518 265 233 0 64 chr6 122392781 122392859 -27124178 - MT2B LTR ERVL -337 264 192 6 1518 1448 79 11 0 chr6 122392863 122393053 -27123984 - B2_Mm2 SINE B2 -2 193 2 6 1518 242 239 16 121 chr6 122393065 122393189 -27123848 + MT2B LTR ERVL 154 264 -337 6 1518 625 181 21 14 chr6 122393084 122393224 -27123813 + B1_Mur1 SINE Alu 8 148 -1 6 1518 183 264 0 0 chr6 122393234 122393287 -27123750 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 6 1518 261 262 62 12 chr6 122393392 122393473 -27123564 + L1MB1 LINE L1 6019 6103 -86 6 1518 24 52 0 33 chr6 122393529 122393548 -27123489 + AT_rich Low_complexity Low_complexity 1 19 0 6 1518 582 254 33 28 chr6 122393548 122393730 -27123307 - B3A SINE B2 -13 185 3 6 1518 24 52 0 33 chr6 122393730 122393770 -27123267 + AT_rich Low_complexity Low_complexity 1 39 0 6 1518 540 198 90 22 chr6 122393770 122393904 -27123133 + B1_Mur1 SINE Alu 2 144 -5 6 1518 355 274 0 0 chr6 122394209 122394293 -27122744 + MER44B DNA MER2_type 31 114 -436 6 1518 425 347 52 30 chr6 122394382 122394614 -27122423 + MER44B DNA MER2_type 107 343 -207 6 1518 296 254 0 0 chr6 122394688 122394759 -27122278 + MER44B DNA MER2_type 453 523 -27 6 1518 254 350 85 6 chr6 122394807 122394971 -27122066 + ERVL-E-int LTR ERVL 2674 2850 -2817 6 1518 231 269 137 126 chr6 122396100 122396283 -27120754 + MTE2a LTR MaLR 48 232 -147 6 1518 438 216 98 0 chr6 122396452 122396554 -27120483 - PB1D9 SINE Alu -8 112 1 6 1518 1227 48 0 0 chr6 122396844 122396990 -27120047 - B1_Mus2 SINE Alu -1 146 1 6 1518 312 317 206 7 chr6 122398127 122398273 -27118764 - B3A SINE B2 -10 188 14 6 1518 3177 128 39 5 chr6 122399078 122399699 -27117338 + Lx3C LINE L1 5385 6093 -880 6 1518 273 241 84 0 chr6 122407771 122407854 -27109183 + B1_Mur1 SINE Alu 55 144 -5 6 1518 603 233 31 0 chr6 122408159 122408288 -27108749 + B3 SINE B2 1 133 -83 6 1518 486 0 0 0 chr6 122408288 122408342 -27108695 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1518 2677 128 45 38 chr6 122408368 122408840 -27108197 + Lx LINE L1 6173 6647 -7 6 1518 696 254 72 10 chr6 122411221 122411416 -27105621 + B3 SINE B2 1 207 -9 6 1518 1120 75 0 26 chr6 122411528 122411679 -27105358 + B1_Mus1 SINE Alu 2 148 0 6 1518 369 145 0 0 chr6 122411681 122411743 -27105294 + (A)n Simple_repeat Simple_repeat 1 62 0 6 1518 270 205 128 0 chr6 122411747 122411825 -27105212 - L1M2 LINE L1 -1142 5001 4914 6 1518 326 278 38 45 chr6 122411841 122411973 -27105064 - B1F SINE Alu -1 148 18 6 1518 336 152 212 0 chr6 122412265 122412331 -27104706 + B1_Mus2 SINE Alu 62 141 -6 6 1518 849 171 0 0 chr6 122412334 122412504 -27104533 + GA-rich Low_complexity Low_complexity 4 173 0 6 1518 555 56 0 0 chr6 122412515 122412586 -27104451 + (GGAAA)n Simple_repeat Simple_repeat 3 73 0 6 1518 329 335 26 20 chr6 122412962 122413114 -27103923 + MER58A DNA MER1_type 12 164 -60 6 1518 453 219 114 21 chr6 122413199 122413339 -27103698 + B3 SINE B2 58 210 -6 6 1518 226 221 49 1 chr6 122413355 122413426 -27103611 - PB1D10 SINE Alu -33 114 42 6 1518 273 239 225 29 chr6 122413558 122413569 -27103468 - B4A SINE B4 -21 271 261 6 1518 996 147 77 22 chr6 122413569 122413750 -27103287 + B2_Mm2 SINE B2 1 191 -4 6 1518 326 241 242 22 chr6 122413750 122413964 -27103073 - B4 SINE B4 -32 260 1 6 1518 506 229 144 10 chr6 122414369 122414563 -27102474 + Lx9 LINE L1 4521 4740 -1107 6 1518 1079 173 140 12 chr6 122414554 122414811 -27102226 + Lx9 LINE L1 4846 5135 -712 6 1518 1155 111 39 0 chr6 122414821 122415001 -27102036 + B2_Mm2 SINE B2 8 194 -1 6 1518 578 162 9 19 chr6 122415216 122415323 -27101714 + B1_Mur2 SINE Alu 5 110 -39 6 1518 681 216 181 96 chr6 122415363 122415508 -27101529 + Lx9 LINE L1 5362 5534 -313 6 1518 1173 62 0 0 chr6 122415508 122415654 -27101383 + B1_Mus1 SINE Alu 1 146 -2 6 1518 681 238 172 75 chr6 122415654 122416087 -27100950 + Lx9 LINE L1 5535 6047 -1597 6 1518 835 218 227 0 chr6 122416202 122416418 -27100619 - RMER1A Other Other -469 561 297 6 1518 341 177 32 0 chr6 122416428 122416501 -27100536 - ORR1B1 LTR MaLR -104 290 171 6 1518 408 203 41 29 chr6 122416496 122416625 -27100412 + RMER19B LTR ERVK 484 570 -332 6 1518 981 165 26 5 chr6 122416603 122416792 -27100245 + RMER19C LTR ERVK 419 611 0 6 1518 1076 204 19 24 chr6 122417001 122417212 -27099825 + B3 SINE B2 5 214 -2 6 1518 461 237 104 15 chr6 122417225 122417396 -27099641 + B3A SINE B2 18 199 -17 6 1518 644 237 113 21 chr6 122417450 122417644 -27099393 + B3 SINE B2 5 216 0 6 1518 479 167 122 9 chr6 122417645 122417760 -27099277 + B1_Mus1 SINE Alu 3 130 -18 6 1518 415 265 27 68 chr6 122417793 122417939 -27099098 + ID_B1 SINE B4 84 223 -1 6 1518 241 278 0 0 chr6 122418495 122418549 -27098488 + L1M3 LINE L1 5424 5477 -706 6 1518 291 250 40 0 chr6 122418557 122418633 -27098404 + ID2 SINE ID 3 81 -2 6 1518 223 223 282 0 chr6 122418801 122418904 -27098133 + B1F SINE Alu 1 132 -17 6 1518 430 317 6 94 chr6 122418971 122419131 -27097906 + MTE2a LTR MaLR 16 161 -218 6 1518 236 228 154 82 chr6 122419178 122419288 -27097749 + MTE2a LTR MaLR 287 404 -15 6 1518 2734 83 52 3 chr6 122419296 122419682 -27097355 + RLTR44A LTR ERVK 1 405 0 6 1518 258 222 159 30 chr6 122419775 122419881 -27097156 + B1F SINE Alu 12 116 -1 6 1518 231 390 32 0 chr6 122420207 122420302 -27096735 + B1F SINE Alu 1 98 -51 6 1518 788 260 83 0 chr6 122420730 122420922 -27096115 + B3 SINE B2 2 209 -7 6 1518 439 291 60 0 chr6 122420972 122421106 -27095931 - MTE2b LTR MaLR -222 157 16 6 189 485 138 244 57 chr6 122421209 122421332 -27095705 + B1_Mus2 SINE Alu 2 147 0 6 1519 200 200 20 0 chr6 122421348 122421398 -27095639 + GA-rich Low_complexity Low_complexity 2 52 0 6 1519 2802 102 2 43 chr6 122421422 122421842 -27095195 - RLTR9D LTR ERVK 0 403 1 6 1519 311 111 127 0 chr6 122421843 122421906 -27095131 - ETnERV2-int LTR ERVK -2 7404 7334 6 1519 312 191 16 0 chr6 122422374 122422437 -27094600 - B1_Mus2 SINE Alu -21 126 63 6 1519 236 259 0 0 chr6 122422896 122422950 -27094087 + ID_B1 SINE B4 133 186 -38 6 1519 268 148 19 0 chr6 122423097 122423151 -27093886 + B1_Mur3 SINE Alu 94 148 -1 6 1519 1147 48 14 0 chr6 122424466 122424611 -27092426 + B1_Mus2 SINE Alu 1 147 0 6 1519 810 222 41 10 chr6 122424825 122425021 -27092016 - B3 SINE B2 -4 212 11 6 1519 265 300 35 52 chr6 122425141 122425257 -27091780 - PB1D9 SINE Alu -6 114 1 6 1519 471 319 0 66 chr6 122425746 122425815 -27091222 - RSINE1 SINE B4 -21 144 86 6 1519 1729 21 0 0 chr6 122425815 122426007 -27091030 - B2_Mm1a SINE B2 -1 192 1 6 1519 471 319 0 66 chr6 122426007 122426088 -27090949 - RSINE1 SINE B4 -80 85 5 6 1519 1260 41 0 0 chr6 122426479 122426626 -27090411 + B1_Mus1 SINE Alu 2 148 0 6 1519 540 81 0 0 chr6 122426627 122426701 -27090336 + (GGAAA)n Simple_repeat Simple_repeat 3 76 0 6 1519 693 231 69 6 chr6 122426717 122426891 -27090146 + B3 SINE B2 30 214 -2 6 1519 624 264 138 43 chr6 122426977 122427397 -27089640 + L1_Rod LINE L1 5364 5823 -24 6 1519 632 240 0 23 chr6 122427568 122427700 -27089337 + B3 SINE B2 2 130 -86 6 1519 232 167 24 0 chr6 122427862 122427904 -27089133 - RSINE1 SINE B4 -31 134 92 6 1519 539 269 91 10 chr6 122428056 122428255 -27088782 + ID_B1 SINE B4 2 216 -8 6 1519 513 271 124 12 chr6 122428274 122428435 -27088602 + B4 SINE B4 5 183 -109 6 1519 281 205 12 25 chr6 122428596 122428676 -27088361 + B1_Mur2 SINE Alu 70 148 -1 6 1519 505 161 152 56 chr6 122429585 122429710 -27087327 - B1_Mur4 SINE Alu -9 141 5 6 1519 223 234 77 13 chr6 122430157 122430235 -27086802 - MIRc SINE MIR -33 235 153 6 1519 837 156 146 35 chr6 122430891 122431090 -27085947 + URR1B DNA MER1_type 2 222 -3 6 1519 581 175 125 0 chr6 122431246 122431366 -27085671 - B1_Mus1 SINE Alu -7 141 7 6 1519 367 263 50 10 chr6 122431488 122431588 -27085449 + B3 SINE B2 104 207 -9 6 1519 239 303 64 0 chr6 122431594 122431703 -27085334 + L1M3 LINE L1 5810 5925 -258 6 1519 357 52 18 3 chr6 122431703 122431770 -27085267 + B1_Mus2 SINE Alu 83 149 0 6 1519 21 0 0 0 chr6 122432397 122432418 -27084619 + AT_rich Low_complexity Low_complexity 1 21 0 6 1519 1492 68 10 25 chr6 122432434 122432631 -27084406 + B2_Mm2 SINE B2 1 194 -1 6 1519 356 120 40 0 chr6 122432833 122432908 -27084129 + B1_Mur4 SINE Alu 68 145 -5 6 1519 342 229 74 92 chr6 122433083 122433220 -27083817 + B3A SINE B2 50 197 -1 6 1519 870 236 102 51 chr6 122433304 122433574 -27083463 + MTEa LTR MaLR 3 287 -92 6 1519 788 140 309 23 chr6 122433574 122433749 -27083288 + URR1B DNA MER1_type 1 225 0 6 1519 870 236 102 51 chr6 122433749 122433813 -27083224 + MTEa LTR MaLR 288 354 -25 6 1519 29 28 0 0 chr6 122435943 122435979 -27081058 + GC_rich Low_complexity Low_complexity 1 36 0 6 1519 189 0 0 0 chr6 122435988 122436009 -27081028 + (CCG)n Simple_repeat Simple_repeat 1 21 0 7 1519 185 83 0 27 chr6 122436053 122436090 -27080947 + (CCCCCG)n Simple_repeat Simple_repeat 3 38 0 7 1519 255 293 28 33 chr6 122436261 122436441 -27080596 + (CTCG)n Simple_repeat Simple_repeat 2 180 0 7 1519 237 83 0 0 chr6 122436442 122436478 -27080559 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1519 60 59 0 0 chr6 122436520 122436622 -27080415 + GC_rich Low_complexity Low_complexity 1 102 0 7 1519 825 110 152 0 chr6 122437523 122437687 -27079350 + URR1B DNA MER1_type 37 225 0 7 1519 3398 99 105 30 chr6 122437930 122438387 -27078650 - MT2B2 LTR ERVL 0 584 86 7 1519 1131 68 0 7 chr6 122438387 122438535 -27078502 + B1_Mus1 SINE Alu 2 148 0 7 1519 3398 99 105 30 chr6 122438535 122438620 -27078417 - MT2B2 LTR ERVL -499 85 1 7 1519 273 217 0 32 chr6 122438704 122438766 -27078271 - MER2B DNA MER2_type -63 273 214 7 1519 673 109 0 0 chr6 122439642 122439743 -27077294 - B1_Mus1 SINE Alu -43 105 5 7 1519 1202 41 7 0 chr6 122440058 122440204 -27076833 + B1_Mus1 SINE Alu 2 148 0 7 1519 369 86 0 0 chr6 122440204 122440262 -27076775 + (A)n Simple_repeat Simple_repeat 1 58 0 7 1519 204 40 0 0 chr6 122440374 122440399 -27076638 + (TTTTTG)n Simple_repeat Simple_repeat 4 28 0 7 1519 373 265 48 19 chr6 122440450 122440554 -27076483 - B3 SINE B2 -109 107 1 7 1519 216 282 156 17 chr6 122440633 122440813 -27076224 + MIR SINE MIR 58 262 0 7 1519 447 214 85 28 chr6 122441089 122441195 -27075842 - PB1D10 SINE Alu -5 112 1 7 1519 233 259 35 0 chr6 122441228 122441286 -27075751 - ID_B1 SINE B4 -12 212 153 7 1519 503 254 113 27 chr6 122442752 122442938 -27074099 + B3 SINE B2 15 216 0 7 1519 259 245 184 0 chr6 122443008 122443106 -27073931 + ID_B1 SINE B4 109 224 0 7 1519 402 252 128 14 chr6 122443301 122443442 -27073595 - MIR SINE MIR -46 216 60 7 1519 204 125 0 0 chr6 122444230 122444262 -27072775 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1519 527 216 36 0 chr6 122444470 122444581 -27072456 + B1_Mur1 SINE Alu 35 149 0 7 1519 690 124 143 30 chr6 122444940 122445073 -27071964 + B1_Mus1 SINE Alu 1 148 0 7 1519 427 275 21 23 chr6 122446159 122446308 -27070729 + B1F SINE Alu 1 141 -8 7 1519 535 234 226 0 chr6 122446373 122446510 -27070527 + ID_B1 SINE B4 49 216 -8 7 1519 374 176 13 39 chr6 122446583 122446660 -27070377 + B3A SINE B2 1 75 -123 7 1519 303 202 106 53 chr6 122447067 122447161 -27069876 + MER53 DNA hAT 90 188 -5 7 1519 551 234 31 11 chr6 122447331 122447464 -27069573 + ID_B1 SINE B4 108 242 -50 7 1519 260 337 59 10 chr6 122447462 122447564 -27069473 + RSINE1 SINE B4 24 130 -35 7 1519 212 250 54 0 chr6 122447602 122447658 -27069379 + GA-rich Low_complexity Low_complexity 3 61 0 7 1519 651 209 7 22 chr6 122447861 122447998 -27069039 - B1_Mus1 SINE Alu -2 146 12 7 1519 779 125 6 0 chr6 122447985 122448119 -27068918 + B1_Mus2 SINE Alu 6 144 -5 7 1519 188 135 0 26 chr6 122448132 122448170 -27068867 + A-rich Low_complexity Low_complexity 1 37 0 7 1519 579 250 30 0 chr6 122448174 122448306 -27068731 + B3 SINE B2 2 137 -79 7 1519 304 260 286 29 chr6 122448457 122448667 -27068370 - MER21B LTR ERV1 -109 754 491 7 1519 324 198 116 0 chr6 122449080 122449166 -27067871 - Lx5 LINE L1 -7 7043 6948 7 1519 408 208 189 16 chr6 122449591 122449713 -27067324 + B1_Mus1 SINE Alu 6 148 0 7 1519 377 123 15 0 chr6 122449715 122449780 -27067257 + (GAAAA)n Simple_repeat Simple_repeat 2 67 0 7 1519 591 248 0 0 chr6 122449878 122449999 -27067038 - B3 SINE B2 -95 121 1 7 1519 228 35 0 0 chr6 122450131 122450160 -27066877 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 7 1519 690 67 0 0 chr6 122450167 122450257 -27066780 - B1_Mus2 SINE Alu -19 128 39 7 1519 1866 98 72 103 chr6 122450254 122450631 -27066406 + BGLII_B LTR ERVK 62 426 -15 7 1519 342 186 81 0 chr6 122450642 122450728 -27066309 - PB1D9 SINE Alu 0 120 28 7 1519 432 248 18 9 chr6 122450831 122450945 -27066092 + PB1D10 SINE Alu 2 116 -1 7 1519 1359 160 226 54 chr6 122451451 122451787 -27065250 - ORR1B1 LTR MaLR 0 394 1 7 1519 524 72 0 0 chr6 122451905 122451974 -27065063 - B1_Mus1 SINE Alu -79 69 1 7 1519 307 233 19 126 chr6 122451974 122452008 -27065029 - MT2B LTR ERVL -376 225 134 7 1519 445 195 58 66 chr6 122452209 122452327 -27064710 + ID_B1 SINE B4 84 200 -24 7 1519 575 244 18 62 chr6 122452327 122452494 -27064543 + RSINE1 SINE B4 1 158 -7 7 1519 1156 69 14 0 chr6 122452537 122452682 -27064355 + B1_Mus1 SINE Alu 2 148 0 7 1519 221 75 0 24 chr6 122452688 122452729 -27064308 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 7 1519 3407 112 83 9 chr6 122452994 122453376 -27063661 - MT2B LTR ERVL 0 601 186 7 1519 339 25 0 0 chr6 122453376 122453416 -27063621 + (TA)n Simple_repeat Simple_repeat 1 40 0 7 1519 3407 112 83 9 chr6 122453416 122453584 -27063453 - MT2B LTR ERVL -416 185 10 7 1519 345 92 0 99 chr6 122453638 122453761 -27063276 + B2_Mm2 SINE B2 47 193 -2 7 1519 252 0 0 0 chr6 122453913 122453941 -27063096 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1519 1494 73 0 5 chr6 122453944 122454138 -27062899 + B2_Mm2 SINE B2 3 195 0 7 1519 581 232 43 119 chr6 122454176 122454386 -27062651 - B3 SINE B2 -3 213 20 7 1519 285 316 141 10 chr6 122454532 122454631 -27062406 - PB1D10 SINE Alu -5 112 1 7 1519 446 231 27 27 chr6 122455700 122455811 -27061226 + PB1D10 SINE Alu 5 115 -2 7 1519 236 304 0 18 chr6 122456277 122456334 -27060703 - PB1D7 SINE Alu -18 102 47 7 1519 311 228 152 0 chr6 122456614 122456693 -27060344 + BC1_Mm scRNA scRNA 2 92 -60 7 1519 1355 88 16 6 chr6 122456715 122456898 -27060139 + B2_Mm2 SINE B2 1 185 -10 7 1519 740 251 96 0 chr6 122456907 122457094 -27059943 + B3 SINE B2 1 205 -11 7 1519 225 83 0 0 chr6 122457342 122457378 -27059659 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1519 422 228 7 124 chr6 122457439 122457584 -27059453 - B1_Mur1 SINE Alu -1 148 21 7 1519 1182 81 0 0 chr6 122457615 122457763 -27059274 + B1_Mus1 SINE Alu 1 148 0 7 1519 476 250 57 35 chr6 122457801 122457942 -27059095 + B1_Mur2 SINE Alu 1 144 -5 7 1519 1416 60 5 36 chr6 122457944 122458136 -27058901 - B2_Mm1a SINE B2 -7 186 1 7 1519 567 74 0 0 chr6 122458154 122458235 -27058802 + (TG)n Simple_repeat Simple_repeat 2 82 0 7 1519 1797 138 0 7 chr6 122459175 122459446 -27057591 - MTC LTR MaLR -10 411 143 7 1519 1052 207 35 91 chr6 122459447 122459790 -27057247 - RLTRETN_Mm LTR ERVK 0 409 1 7 1519 806 162 0 14 chr6 122459790 122459927 -27057110 - MTC LTR MaLR -270 137 3 7 1519 1695 204 80 37 chr6 122459979 122460381 -27056656 - MTC LTR MaLR 0 421 3 7 1519 614 117 10 21 chr6 122460595 122460691 -27056346 + B1_Mur1 SINE Alu 53 147 -2 7 1519 331 194 147 19 chr6 122460926 122461025 -27056012 + PB1D9 SINE Alu 2 104 -13 7 1519 782 154 41 20 chr6 122461026 122461172 -27055865 - B1_Mur4 SINE Alu -1 149 1 7 1519 573 190 20 0 chr6 122461212 122461312 -27055725 + B1_Mus1 SINE Alu 1 102 -46 7 1519 378 300 34 60 chr6 122461223 122461340 -27055697 + MT2B LTR ERVL 175 288 -313 7 1519 780 200 0 0 chr6 122461633 122461768 -27055269 + B1_Mur2 SINE Alu 14 148 -1 7 1519 2000 135 6 42 chr6 122461916 122462272 -27054765 - RLTR11B LTR ERVK -110 343 1 7 1519 250 82 204 0 chr6 122462272 122462321 -27054716 - B1F2 SINE Alu -59 90 32 7 1519 212 0 36 0 chr6 122462371 122462399 -27054638 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1519 880 87 0 0 chr6 122462400 122462515 -27054522 - B1_Mus1 SINE Alu -12 136 22 7 1519 225 0 0 0 chr6 122462631 122462656 -27054381 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 1519 248 340 124 20 chr6 122462739 122462892 -27054145 + B4 SINE B4 38 206 -86 7 1519 423 267 78 0 chr6 122462785 122462893 -27054144 + B1F1 SINE Alu 5 120 -29 7 1519 471 289 93 47 chr6 122462893 122463107 -27053930 + ID_B1 SINE B4 1 224 0 7 1519 213 119 0 0 chr6 122463196 122463238 -27053799 + (GA)n Simple_repeat Simple_repeat 2 43 0 7 1519 561 125 0 0 chr6 122463487 122463575 -27053462 + (TC)n Simple_repeat Simple_repeat 2 89 0 7 1519 258 222 63 0 chr6 122464078 122464141 -27052896 + PB1 SINE Alu 42 108 -19 7 1519 396 200 95 3 chr6 122465480 122465590 -27051447 + PB1D9 SINE Alu 2 117 -30 7 1519 500 140 68 23 chr6 122465596 122465684 -27051353 + 4.5SRNA scRNA scRNA 1 92 -2 7 1519 947 104 44 0 chr6 122465684 122465819 -27051218 + B1_Mur4 SINE Alu 2 142 -8 7 1519 413 233 23 23 chr6 122466206 122466252 -27050785 - BC1_Mm scRNA scRNA -20 132 86 7 1519 973 133 7 0 chr6 122466252 122466395 -27050642 - B1_Mus2 SINE Alu 0 147 4 7 1519 413 233 23 23 chr6 122466395 122466480 -27050557 - BC1_Mm scRNA scRNA -67 85 1 7 1519 302 325 13 0 chr6 122466528 122466605 -27050432 - ID4 SINE ID -3 80 3 7 1519 732 23 0 0 chr6 122466680 122466766 -27050271 + (TC)n Simple_repeat Simple_repeat 2 87 0 7 1519 880 126 0 8 chr6 122466770 122466898 -27050139 - B1_Mur4 SINE Alu -17 133 7 7 1519 1242 92 69 0 chr6 122466917 122467091 -27049946 - B2_Mm2 SINE B2 -8 187 2 7 1519 981 122 7 33 chr6 122467246 122467398 -27049639 + B1_Mus1 SINE Alu 1 148 0 7 1519 584 244 15 30 chr6 122467403 122467534 -27049503 + B1F2 SINE Alu 1 129 -20 7 1519 390 294 33 53 chr6 122467534 122467549 -27049488 + ID_B1 SINE B4 82 224 0 8 1519 451 200 11 22 chr6 122468149 122468241 -27048796 + B3 SINE B2 118 208 -8 8 1519 380 214 24 12 chr6 122468277 122468362 -27048675 - B3 SINE B2 0 216 131 8 1519 212 100 25 0 chr6 122468363 122468403 -27048634 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 8 1519 564 195 26 26 chr6 122468407 122468523 -27048514 - B3 SINE B2 -95 121 6 8 1519 486 0 0 0 chr6 122468606 122468660 -27048377 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 8 1519 864 159 11 6 chr6 122468660 122468837 -27048200 + CT-rich Low_complexity Low_complexity 1 178 0 8 1519 349 211 14 0 chr6 122468871 122468942 -27048095 - ID_B1 SINE B4 -63 161 90 8 1519 209 33 33 0 chr6 122469145 122469175 -27047862 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1519 563 223 64 14 chr6 122469226 122469367 -27047670 + B1F2 SINE Alu 2 149 0 8 1519 338 193 43 54 chr6 122469691 122469784 -27047253 + L1MA9 LINE L1 6179 6270 -42 8 1519 500 219 31 0 chr6 122469872 122469968 -27047069 + PB1D10 SINE Alu 19 117 0 8 1519 228 318 252 0 chr6 122469968 122469979 -27047058 + B4A SINE B4 104 237 -55 8 1519 897 245 32 0 chr6 122470012 122470228 -27046809 + ID_B1 SINE B4 2 224 0 8 1519 214 256 0 35 chr6 122470256 122470341 -27046696 + (TTTA)n Simple_repeat Simple_repeat 2 83 0 8 1519 430 264 89 41 chr6 122471122 122471268 -27045769 + RSINE1 SINE B4 1 153 -12 8 1519 732 151 84 0 chr6 122471373 122471492 -27045545 + B3 SINE B2 2 130 -86 8 1519 1148 71 0 0 chr6 122471588 122471728 -27045309 - B1_Mus1 SINE Alu -7 141 2 8 1519 769 208 0 51 chr6 122472413 122472570 -27044467 - B1_Mur3 SINE Alu 0 149 1 8 1519 196 364 13 13 chr6 122473264 122473342 -27043695 - L2 LINE L2 -1037 2382 2305 8 1519 900 198 69 10 chr6 122473349 122473453 -27043584 + B3 SINE B2 1 112 -104 8 1519 194 0 39 0 chr6 122473453 122473479 -27043558 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 8 1519 900 198 69 10 chr6 122473479 122473578 -27043459 + B3 SINE B2 113 215 -1 8 1519 338 320 0 10 chr6 122473935 122474033 -27043004 + PB1D10 SINE Alu 2 98 -19 8 1519 703 202 17 12 chr6 122474074 122474218 -27042819 - B1_Mur2 SINE Alu 0 149 7 8 1519 640 222 192 11 chr6 122474548 122474730 -27042307 - B3 SINE B2 0 216 2 8 1519 347 143 22 0 chr6 122474738 122474829 -27042208 + (TCTCTG)n Simple_repeat Simple_repeat 4 96 0 8 1519 1027 66 73 0 chr6 122474944 122475081 -27041956 - B1_Mus1 SINE Alu 0 148 2 8 1519 778 221 150 5 chr6 122475089 122475276 -27041761 - B3 SINE B2 0 216 3 8 1519 1243 109 10 45 chr6 122476491 122476692 -27040345 + B2_Mm2 SINE B2 1 194 -1 8 1519 951 210 29 34 chr6 122477150 122477357 -27039680 - B3 SINE B2 -10 206 1 8 1519 226 290 129 88 chr6 122478065 122478258 -27038779 - MIRc SINE MIR -67 201 1 8 1519 294 281 12 24 chr6 122478805 122478889 -27038148 - ID4 SINE ID 0 83 1 8 1519 21 0 0 0 chr6 122478896 122478917 -27038120 + AT_rich Low_complexity Low_complexity 1 21 0 8 1519 1017 205 25 20 chr6 122479083 122479287 -27037750 + B3 SINE B2 1 205 -11 8 1519 23 54 0 0 chr6 122479325 122479362 -27037675 + AT_rich Low_complexity Low_complexity 1 37 0 8 1519 284 85 43 0 chr6 122479864 122479911 -27037126 + (TTTTA)n Simple_repeat Simple_repeat 1 49 0 8 1519 596 197 88 36 chr6 122479911 122480048 -27036989 - B1F1 SINE Alu 0 149 6 8 1519 817 231 61 42 chr6 122480527 122480739 -27036298 + B3 SINE B2 1 216 0 8 1519 265 247 91 34 chr6 122480768 122480856 -27036181 + B3A SINE B2 99 191 -7 8 1519 597 282 32 0 chr6 122480967 122481123 -27035914 + RSINE1 SINE B4 3 163 -2 8 1519 255 265 12 161 chr6 122481587 122481749 -27035288 - B1F2 SINE Alu -9 140 3 8 1519 281 240 92 46 chr6 122482271 122482336 -27034701 - B4 SINE B4 -151 141 5 8 1519 295 197 76 0 chr6 122482336 122482402 -27034635 - B3A SINE B2 -123 75 5 8 1519 1271 94 5 50 chr6 122482492 122482530 -27034507 - B2_Mm1t SINE B2 0 193 165 8 1519 351 0 0 0 chr6 122482530 122482569 -27034468 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 8 1519 1271 94 5 50 chr6 122482569 122482731 -27034306 - B2_Mm1t SINE B2 -29 164 2 8 1519 239 326 10 21 chr6 122483548 122483645 -27033392 + PB1D10 SINE Alu 1 96 -21 8 1519 198 0 0 0 chr6 122483650 122483672 -27033365 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 8 1519 366 200 28 43 chr6 122483687 122483828 -27033209 + T-rich Low_complexity Low_complexity 3 141 0 8 1519 883 122 7 28 chr6 122483830 122483974 -27033063 - B1_Mur3 SINE Alu 0 149 9 8 1519 639 71 0 0 chr6 122484078 122484163 -27032874 + (GA)n Simple_repeat Simple_repeat 2 86 0 8 1519 576 229 90 0 chr6 122484667 122484789 -27032248 + ID_B1 SINE B4 81 213 -11 8 1519 805 284 30 8 chr6 122485044 122485278 -27031759 - B4A SINE B4 -6 286 48 8 1519 884 76 0 0 chr6 122485469 122485588 -27031449 - B1_Mus1 SINE Alu 0 148 30 8 1519 519 293 16 158 chr6 122485708 122485806 -27031231 + B3 SINE B2 5 83 -133 8 1519 1194 82 0 0 chr6 122485806 122485953 -27031084 - B1_Mus1 SINE Alu -1 147 1 8 1519 519 293 16 158 chr6 122485953 122486101 -27030936 + B3 SINE B2 84 216 0 8 1519 237 167 0 40 chr6 122486148 122486198 -27030839 + B1_Mus2 SINE Alu 1 48 -99 8 1519 794 71 56 21 chr6 122486203 122486347 -27030690 + RMER17B LTR ERVK 312 460 -498 8 1519 270 0 0 0 chr6 122486347 122486377 -27030660 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 8 1519 524 80 0 39 chr6 122486377 122486455 -27030582 + B1_Mus2 SINE Alu 73 147 0 8 1519 29 0 0 0 chr6 122486455 122486484 -27030553 + AT_rich Low_complexity Low_complexity 1 29 0 8 1519 339 194 75 0 chr6 122486860 122486927 -27030110 - ID4 SINE ID -6 77 6 8 1519 888 225 33 28 chr6 122486951 122487166 -27029871 - B3 SINE B2 0 216 1 8 1519 380 218 178 0 chr6 122487184 122487285 -27029752 - PB1D9 SINE Alu 0 120 2 8 1519 267 241 34 22 chr6 122487209 122487298 -27029739 - MT2B LTR ERVL -361 240 151 8 1519 21 0 0 0 chr6 122487832 122487853 -27029184 + AT_rich Low_complexity Low_complexity 1 21 0 8 1519 545 176 0 56 chr6 122487926 122488034 -27029003 - B3A SINE B2 -96 102 1 8 1519 379 299 41 0 chr6 122488109 122488206 -27028831 - PB1D10 SINE Alu -15 102 2 8 1519 585 266 94 94 chr6 122488238 122488537 -27028500 + ORR1E LTR MaLR 8 306 -53 8 1519 447 304 29 63 chr6 122488593 122488800 -27028237 - L1MB5 LINE L1 -87 6087 5888 8 1519 1294 27 0 0 chr6 122488902 122489049 -27027988 - B1_Mus2 SINE Alu 0 147 1 8 1519 28 0 0 0 chr6 122489195 122489223 -27027814 + AT_rich Low_complexity Low_complexity 1 28 0 8 1519 732 189 24 0 chr6 122489449 122489576 -27027461 - B3 SINE B2 -86 130 1 8 1519 321 272 154 49 chr6 122490043 122490186 -27026851 + B3A SINE B2 2 159 -39 8 1519 207 0 0 0 chr6 122490248 122490271 -27026766 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1519 917 141 0 27 chr6 122490512 122490658 -27026379 - B1_Mur1 SINE Alu -5 144 3 8 1519 262 319 34 21 chr6 122490672 122490776 -27026261 - PB1D9 SINE Alu -10 110 6 8 1519 416 247 42 177 chr6 122490849 122491041 -27025996 + B3A SINE B2 30 195 0 8 1519 1049 284 88 13 chr6 122491066 122491451 -27025586 - Lx9 LINE L1 -629 7015 6602 8 1519 364 214 141 10 chr6 122491508 122491607 -27025430 + Lx9 LINE L1 7049 7160 -484 8 1519 262 0 26 26 chr6 122491659 122491698 -27025339 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 8 1519 666 233 23 0 chr6 122491718 122491851 -27025186 + RSINE1 SINE B4 1 136 -29 8 1519 945 162 0 0 chr6 122491878 122492020 -27025017 - B1_Mur4 SINE Alu -7 143 2 8 1519 583 279 29 0 chr6 122492063 122492203 -27024834 + B1F SINE Alu 5 148 -1 8 1519 1094 95 7 0 chr6 122492499 122492646 -27024391 - B1_Mus1 SINE Alu 0 148 1 8 1519 1074 71 0 14 chr6 122492671 122492814 -27024223 - B2_Mm2 SINE B2 -54 141 1 8 1519 298 253 82 21 chr6 122492868 122492965 -27024072 - MurSatRep1 Unknown Unknown -1839 298 196 8 1519 747 255 35 92 chr6 122492966 122493312 -27023725 + RLTR15 LTR ERVK 1 326 -33 8 1519 512 210 8 0 chr6 122493314 122493585 -27023452 + (CA)n Simple_repeat Simple_repeat 1 273 0 8 1519 185 163 20 0 chr6 122493606 122493655 -27023382 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1519 449 261 59 15 chr6 122493669 122493805 -27023232 + L1M2 LINE L1 5343 5484 -813 8 1519 318 222 51 85 chr6 122493810 122493928 -27023109 + B3 SINE B2 2 115 -101 8 1519 232 207 124 0 chr6 122493928 122494000 -27023037 + L1M2 LINE L1 5856 5935 -365 8 1519 221 238 0 0 chr6 122494039 122494081 -27022956 + B1_Mus2 SINE Alu 2 43 -104 8 1519 480 180 217 20 chr6 122494106 122494232 -27022805 + B3A SINE B2 4 147 -51 8 1519 204 40 0 0 chr6 122494232 122494257 -27022780 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1519 298 216 225 95 chr6 122494257 122494299 -27022738 + B2_Mm2 SINE B2 147 194 -1 8 1519 930 155 0 0 chr6 122494425 122494567 -27022470 - B1_Mus1 SINE Alu -1 147 6 8 1519 529 243 27 96 chr6 122494567 122494605 -27022432 - ID_B1 SINE B4 0 201 51 8 1519 439 196 14 0 chr6 122494611 122494754 -27022283 + (TG)n Simple_repeat Simple_repeat 1 145 0 8 1519 686 180 6 0 chr6 122494783 122494961 -27022076 + (TG)n Simple_repeat Simple_repeat 1 179 0 8 1519 440 255 47 0 chr6 122494972 122495078 -27021959 - RSINE1 SINE B4 0 165 55 8 1519 374 241 108 0 chr6 122495066 122495149 -27021888 - B1F SINE Alu -57 92 1 8 1519 358 211 144 0 chr6 122495188 122495278 -27021759 - ID_B1 SINE B4 -1 223 121 8 1519 577 235 58 19 chr6 122496073 122496229 -27020808 - RSINE1 SINE B4 -1 164 3 8 1519 290 297 72 0 chr6 122496274 122496385 -27020652 + PB1 SINE Alu 1 119 -8 8 1519 249 33 0 0 chr6 122496392 122496422 -27020615 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1519 1054 139 40 6 chr6 122496702 122496875 -27020162 + URR1A DNA MER1_type 45 223 -3 9 1519 1017 195 56 0 chr6 122497060 122497255 -27019782 + B3 SINE B2 4 209 -7 9 1519 322 323 31 0 chr6 122497461 122497557 -27019480 - B1F1 SINE Alu -50 99 1 9 1519 342 240 35 96 chr6 122497632 122497747 -27019290 + B1_Mus2 SINE Alu 40 147 0 9 1519 392 164 13 76 chr6 122497671 122497750 -27019287 + ID_B1 SINE B4 150 223 -1 9 1519 1260 89 0 0 chr6 122497760 122497940 -27019097 + (CATA)n Simple_repeat Simple_repeat 1 180 0 9 1519 21 0 0 0 chr6 122498128 122498149 -27018888 + AT_rich Low_complexity Low_complexity 1 21 0 9 1519 377 20 20 0 chr6 122498165 122498215 -27018822 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 1519 449 293 72 78 chr6 122498235 122498528 -27018509 - B4A SINE B4 -1 291 1 9 1519 297 0 0 0 chr6 122498536 122498569 -27018468 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1519 720 166 79 0 chr6 122498852 122498991 -27018046 - B1_Mur4 SINE Alu 0 150 1 9 1519 345 140 0 0 chr6 122499218 122499275 -27017762 + (ATG)n Simple_repeat Simple_repeat 1 57 0 9 1519 344 248 22 5 chr6 122499417 122499507 -27017530 + PB1D9 SINE Alu 40 126 -24 9 1519 241 274 0 0 chr6 122500109 122500160 -27016877 + polypurine Low_complexity Low_complexity 3 53 0 1 1519 334 267 23 0 chr6 122500195 122500281 -27016756 + L1MB7 LINE L1 5931 6018 -166 2 1519 601 170 38 0 chr6 122500336 122500442 -27016595 + B3A SINE B2 1 110 -88 3 1519 666 118 0 0 chr6 122500468 122500570 -27016467 + (CA)n Simple_repeat Simple_repeat 1 102 0 4 1519 236 161 31 31 chr6 122500579 122500643 -27016394 + T-rich Low_complexity Low_complexity 4 67 0 5 1519 574 189 163 16 chr6 122500644 122500773 -27016264 - B1_Mur2 SINE Alu -1 148 1 6 1519 24 0 0 0 chr6 122500774 122500798 -27016239 + AT_rich Low_complexity Low_complexity 1 24 0 7 1519 446 223 196 0 chr6 122500804 122500916 -27016121 + RSINE1 SINE B4 3 136 -29 8 1519 201 121 0 0 chr6 122501111 122501144 -27015893 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 9 1519 480 284 110 0 chr6 122501337 122501464 -27015573 - B1F1 SINE Alu 0 149 9 1 1519 252 146 0 40 chr6 122501499 122501549 -27015488 - B1_Mur1 SINE Alu -3 146 99 1 1519 1438 61 17 0 chr6 122501576 122501757 -27015280 - B2_Mm2 SINE B2 -10 185 2 1 1519 453 62 0 0 chr6 122501791 122501856 -27015181 + (TTTA)n Simple_repeat Simple_repeat 4 68 0 1 1519 789 164 0 0 chr6 122501870 122501992 -27015045 - B2_Mm2 SINE B2 -73 122 1 1 1519 715 296 6 0 chr6 122502035 122502194 -27014843 + RSINE1 SINE B4 1 160 -5 1 1519 24 0 0 0 chr6 122502215 122502239 -27014798 + AT_rich Low_complexity Low_complexity 1 24 0 1 1519 418 199 31 39 chr6 122502701 122502797 -27014240 + B1_Mur1 SINE Alu 51 141 -8 1 1519 1105 98 6 6 chr6 122502797 122502972 -27014065 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 1 1519 300 219 0 30 chr6 122502976 122503042 -27013995 + B3 SINE B2 36 99 -117 1 1519 340 200 0 0 chr6 122503033 122503098 -27013939 - B3A SINE B2 -132 66 2 2 1519 201 39 0 0 chr6 122503492 122503518 -27013519 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1519 225 0 0 0 chr6 122504351 122504376 -27012661 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1519 814 186 4 12 chr6 122504763 122505016 -27012021 + CT-rich Low_complexity Low_complexity 1 250 0 2 1519 265 224 86 0 chr6 122505059 122505117 -27011920 - ID4_ SINE ID -19 64 2 2 1519 333 118 0 0 chr6 122505122 122505173 -27011864 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1519 495 260 15 66 chr6 122506160 122506296 -27010741 - B1_Mur1 SINE Alu -20 129 1 2 1519 359 276 31 0 chr6 122506395 122506493 -27010544 + B1F SINE Alu 42 142 -7 2 1519 556 302 78 21 chr6 122506586 122506867 -27010170 + L1ME1 LINE L1 5687 5983 -196 2 1519 378 278 162 53 chr6 122507251 122507498 -27009539 + B4 SINE B4 2 275 -17 2 1519 396 0 0 0 chr6 122507583 122507627 -27009410 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1519 494 164 282 8 chr6 122507635 122507752 -27009285 - B3 SINE B2 -67 149 1 3 1519 509 224 215 16 chr6 122507807 122507993 -27009044 + ID_B1 SINE B4 1 223 -1 3 1519 25 0 0 0 chr6 122507993 122508018 -27009019 + AT_rich Low_complexity Low_complexity 1 25 0 3 1519 686 278 28 0 chr6 122508100 122508244 -27008793 + RSINE1 SINE B4 12 159 -6 3 1519 265 359 26 58 chr6 122508518 122508609 -27008428 - ID_B1 SINE B4 -67 157 9 3 1519 277 286 32 0 chr6 122508609 122508672 -27008365 - ID4 SINE ID -10 73 9 3 1519 269 300 0 0 chr6 122508660 122508730 -27008307 - PB1D7 SINE Alu -11 109 40 3 1519 211 196 0 0 chr6 122508730 122508776 -27008261 + C-rich Low_complexity Low_complexity 1 46 0 3 1519 956 151 36 46 chr6 122508954 122509148 -27007889 + B2_Mm2 SINE B2 2 193 -2 3 1519 236 325 0 12 chr6 122509336 122509417 -27007620 + ID4 SINE ID 2 81 -2 4 1519 484 136 114 0 chr6 122509722 122509810 -27007227 + B1_Mus2 SINE Alu 41 138 -9 4 1519 186 43 0 0 chr6 122509810 122509833 -27007204 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1519 462 114 0 0 chr6 122510498 122510568 -27006469 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1519 752 158 0 8 chr6 122510861 122510982 -27006055 + B1_Mur1 SINE Alu 2 121 -28 4 1519 478 253 42 0 chr6 122511455 122511550 -27005487 - PB1D10 SINE Alu -6 111 13 4 1519 252 300 14 0 chr6 122511589 122511659 -27005378 + ID4 SINE ID 2 72 -11 4 1519 360 0 0 0 chr6 122511783 122511823 -27005214 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1519 331 97 56 0 chr6 122511978 122512050 -27004987 + (TCTG)n Simple_repeat Simple_repeat 2 77 0 4 1519 291 93 0 0 chr6 122512052 122512095 -27004942 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1519 349 266 268 27 chr6 122513753 122513865 -27003172 + ID_B1 SINE B4 80 218 -6 5 1519 551 243 26 88 chr6 122513765 122513878 -27003159 + PB1D10 SINE Alu 12 117 -32 5 1519 353 22 0 21 chr6 122514371 122514418 -27002619 + (CCCCCA)n Simple_repeat Simple_repeat 4 49 0 5 1519 577 215 60 30 chr6 122514559 122514693 -27002344 + B1_Mur4 SINE Alu 12 149 -1 5 1519 366 192 14 0 chr6 122514703 122514776 -27002261 + L1M4 LINE L1 4802 4875 -1271 5 1519 266 176 98 0 chr6 122514838 122514889 -27002148 + PB1 SINE Alu 8 63 -64 5 1519 1211 40 7 0 chr6 122514895 122515043 -27001994 - BGLII LTR ERVK -1 420 272 5 1519 249 0 0 0 chr6 122515055 122515084 -27001953 - BGLII LTR ERVK -392 29 1 5 1519 1260 187 103 29 chr6 122515389 122515730 -27001307 - ORR1D2 LTR MaLR 0 370 5 5 1519 24 0 0 0 chr6 122515977 122516001 -27001036 + AT_rich Low_complexity Low_complexity 1 24 0 5 1519 765 227 59 11 chr6 122517738 122517911 -26999126 + B3A SINE B2 1 183 -15 5 1519 209 83 28 0 chr6 122517911 122517947 -26999090 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1519 765 227 59 11 chr6 122517947 122517960 -26999077 + B3A SINE B2 184 196 -2 5 1519 564 325 0 6 chr6 122518129 122518287 -26998750 + ID_B1 SINE B4 1 157 -67 6 1519 276 273 0 15 chr6 122518295 122518362 -26998675 + RSINE1 SINE B4 12 77 -88 6 1519 501 189 32 0 chr6 122518571 122518666 -26998371 + PB1D10 SINE Alu 3 100 -17 6 1519 468 253 131 61 chr6 122519694 122519716 -26997321 + B4 SINE B4 78 143 -149 6 1519 801 102 76 23 chr6 122519716 122519847 -26997190 + B1_Mur4 SINE Alu 12 149 -1 6 1519 468 253 131 61 chr6 122519847 122519892 -26997145 + B4 SINE B4 144 289 -3 6 1519 360 181 19 28 chr6 122520406 122520514 -26996523 + CT-rich Low_complexity Low_complexity 1 107 0 6 1519 506 275 27 40 chr6 122520514 122520662 -26996375 - ID_B1 SINE B4 -77 147 2 6 1519 275 253 185 74 chr6 122521515 122521677 -26995360 - MIR SINE MIR -82 180 1 6 1519 377 315 101 14 chr6 122521906 122522054 -26994983 + RSINE1 SINE B4 3 163 -2 6 1519 387 272 65 100 chr6 122523505 122523545 -26993492 + MT2B LTR ERVL 134 231 -353 7 1519 879 154 0 0 chr6 122523545 122523675 -26993362 + B1_Mus1 SINE Alu 11 140 -8 7 1519 387 272 65 100 chr6 122523675 122523716 -26993321 + MT2B LTR ERVL 232 339 -245 7 1519 530 231 118 6 chr6 122523742 122523903 -26993134 + B4A SINE B4 113 291 -1 7 1519 815 149 50 0 chr6 122523982 122524123 -26992914 - B1_Mur4 SINE Alu -1 149 2 7 1519 746 174 45 0 chr6 122524179 122524311 -26992726 + B1_Mur3 SINE Alu 2 139 -10 7 1519 221 0 35 0 chr6 122524311 122524340 -26992697 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1519 433 305 43 0 chr6 122524427 122524568 -26992469 - B1F1 SINE Alu -2 147 1 7 1519 900 217 85 49 chr6 122524630 122524927 -26992110 + RLTR15 LTR ERVK 1 309 -50 7 1519 2096 121 31 204 chr6 122524927 122525099 -26991938 - RLTR23 LTR ERV1 0 430 270 7 1519 4532 83 26 33 chr6 122525099 122525760 -26991277 + Lx LINE L1 5989 6644 -10 7 1519 2096 121 31 204 chr6 122525760 122526107 -26990930 - RLTR23 LTR ERV1 -161 269 1 7 1519 248 271 173 33 chr6 122526167 122526366 -26990671 - MTE2a LTR MaLR -13 366 133 8 1519 282 310 124 11 chr6 122526658 122526844 -26990193 - HAL1 LINE L1 -674 1833 1627 8 1519 736 146 65 65 chr6 122526896 122527065 -26989972 - B2_Mm2 SINE B2 -25 170 2 8 1519 260 250 0 105 chr6 122527065 122527139 -26989898 - MTE2a LTR MaLR -39 340 275 8 1519 516 211 9 19 chr6 122527249 122527355 -26989682 - PB1D10 SINE Alu -2 115 11 8 1519 333 153 0 0 chr6 122527841 122527913 -26989124 + T-rich Low_complexity Low_complexity 1 72 0 8 1519 342 377 34 14 chr6 122527926 122528074 -26988963 + RSINE1 SINE B4 3 153 -12 8 1519 444 326 8 8 chr6 122528317 122528447 -26988590 - ID_B1 SINE B4 -15 209 80 8 1519 711 203 14 7 chr6 122528476 122528620 -26988417 - B1F2 SINE Alu -4 145 1 8 1519 244 276 62 50 chr6 122528637 122528717 -26988320 - ID4_ SINE ID -1 82 2 8 1519 576 209 0 0 chr6 122529265 122529375 -26987662 - PB1D10 SINE Alu -7 110 1 9 1519 654 13 0 0 chr6 122529389 122529464 -26987573 + (TC)n Simple_repeat Simple_repeat 2 76 0 9 1519 1309 90 0 17 chr6 122529464 122529645 -26987392 - B2_Mm2 SINE B2 -17 178 1 9 1519 625 174 46 0 chr6 122529825 122529934 -26987103 + PB1D9 SINE Alu 6 119 -1 9 1519 726 310 91 49 chr6 122529990 122530319 -26986718 + ORR1E LTR MaLR 1 343 -16 9 1519 474 234 60 18 chr6 122530355 122530504 -26986533 + B3A SINE B2 20 175 -23 9 1519 626 284 0 28 chr6 122530536 122530681 -26986356 + ID_B1 SINE B4 82 222 -2 9 1519 353 267 90 22 chr6 122530884 122531018 -26986019 + B1F SINE Alu 3 145 -4 9 1519 226 231 39 167 chr6 122531031 122531109 -26985928 + ID4_ SINE ID 14 81 -2 9 1519 591 202 0 0 chr6 122531837 122531961 -26985076 + (TA)n Simple_repeat Simple_repeat 2 125 0 9 1519 393 22 0 0 chr6 122532053 122532099 -26984938 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1519 652 295 148 0 chr6 122532158 122532395 -26984642 - B4A SINE B4 -18 274 3 1 1519 339 208 91 0 chr6 122532540 122532617 -26984420 + B1F2 SINE Alu 2 85 -64 1 1519 218 312 38 0 chr6 122532755 122532835 -26984202 + PB1D7 SINE Alu 32 114 -6 1 1519 546 261 17 8 chr6 122533017 122533166 -26983871 + B3A SINE B2 50 202 -14 1 1519 24 0 0 0 chr6 122533194 122533218 -26983819 + AT_rich Low_complexity Low_complexity 1 24 0 1 1519 618 59 0 56 chr6 122533246 122533353 -26983684 + (GGA)n Simple_repeat Simple_repeat 3 103 0 1 1519 551 176 101 0 chr6 122533906 122534025 -26983012 + B1_Mus2 SINE Alu 17 147 0 1 1519 405 86 0 0 chr6 122534027 122534085 -26982952 + (TAA)n Simple_repeat Simple_repeat 3 60 0 1 1519 37 99 0 0 chr6 122534091 122534212 -26982825 + AT_rich Low_complexity Low_complexity 1 121 0 1 1519 189 107 0 0 chr6 122534214 122534242 -26982795 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1 1519 209 152 21 21 chr6 122534653 122534700 -26982337 + CT-rich Low_complexity Low_complexity 2 48 0 1 1519 529 167 115 66 chr6 122534911 122535033 -26982004 - RLTR14 LTR ERV1 -241 141 14 1 1519 458 33 17 0 chr6 122535144 122535204 -26981833 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1519 823 209 33 33 chr6 122535273 122535456 -26981581 + B3 SINE B2 9 191 -25 1 1519 953 106 5 0 chr6 122535897 122536098 -26980939 + (CATA)n Simple_repeat Simple_repeat 1 202 0 1 1519 270 0 0 0 chr6 122536477 122536507 -26980530 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1519 1684 31 0 0 chr6 122536526 122536719 -26980318 - B2_Mm1t SINE B2 0 193 1 1 1519 1152 88 0 0 chr6 122536751 122536898 -26980139 + B1_Mus1 SINE Alu 2 148 0 1 1519 183 100 0 0 chr6 122536898 122536928 -26980109 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1519 195 42 0 0 chr6 122537081 122537105 -26979932 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 1519 722 115 88 9 chr6 122537272 122537386 -26979651 + B1_Mur3 SINE Alu 26 148 -1 1 1519 201 39 0 0 chr6 122537448 122537474 -26979563 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1519 573 162 98 98 chr6 122537747 122537911 -26979126 - RCHARR1 DNA MER1_type -37 937 774 1 1519 609 171 267 0 chr6 122537949 122538095 -26978942 - B2_Mm2 SINE B2 -10 185 1 1 1519 275 283 29 39 chr6 122538292 122538395 -26978642 + PB1D10 SINE Alu 12 113 -4 1 1519 390 183 29 106 chr6 122539359 122539377 -26977660 + B1_Mur1 SINE Alu 52 147 -2 1 1519 548 131 0 23 chr6 122539377 122539463 -26977574 + ID_B1 SINE B4 141 224 0 1 1519 26 0 0 0 chr6 122539463 122539489 -26977548 + AT_rich Low_complexity Low_complexity 1 26 0 1 1519 1193 49 0 20 chr6 122539499 122539646 -26977391 + B1_Mus1 SINE Alu 5 148 0 1 1519 463 274 20 82 chr6 122539817 122539964 -26977073 - ID_B1 SINE B4 -81 143 6 1 1519 392 347 0 7 chr6 122539964 122540109 -26976928 - B1F SINE Alu -5 144 1 1 1519 275 239 25 112 chr6 122540207 122540287 -26976750 - ID4 SINE ID -1 82 10 1 1519 359 138 34 11 chr6 122540317 122540405 -26976632 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 1519 661 191 149 25 chr6 122540405 122540566 -26976471 - B3A SINE B2 -16 182 2 1 1519 391 299 67 7 chr6 122540573 122540708 -26976329 - B1F SINE Alu -6 143 1 1 1519 23 0 0 0 chr6 122540814 122540837 -26976200 + AT_rich Low_complexity Low_complexity 1 23 0 1 1519 212 338 38 63 chr6 122540891 122540922 -26976115 + B4 SINE B4 53 147 -145 1 1519 310 324 0 45 chr6 122540922 122541032 -26976005 + PB1 SINE Alu 1 105 -22 1 1519 212 338 38 63 chr6 122541032 122541049 -26975988 + B4 SINE B4 148 206 -86 1 1519 1963 180 41 3 chr6 122541854 122542217 -26974820 - MTD LTR MaLR -15 404 28 1 1519 513 0 0 0 chr6 122542780 122542837 -26974200 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1519 727 255 65 0 chr6 122543006 122543190 -26973847 + B3A SINE B2 1 196 -2 1 1519 387 60 0 0 chr6 122543227 122543277 -26973760 + (TTAG)n Simple_repeat Simple_repeat 3 52 0 1 1519 693 197 16 0 chr6 122543279 122543406 -26973631 - B1_Mur2 SINE Alu -4 145 17 1 1519 228 230 76 131 chr6 122543406 122543423 -26973614 + YREP_Mm Unknown Unknown 181 316 -1496 1 1519 752 233 127 22 chr6 122543569 122543751 -26973286 + B3 SINE B2 2 193 -2 1 1519 387 305 94 9 chr6 122544056 122544168 -26972869 - B1F SINE Alu -4 123 3 1 1519 284 263 152 0 chr6 122544169 122544268 -26972769 - L1M5 LINE L1 -371 5753 5640 1 1519 709 282 14 5 chr6 122544293 122544510 -26972527 - ID_B1 SINE B4 -4 220 2 1 1519 243 125 0 0 chr6 122544814 122544854 -26972183 + (CAGA)n Simple_repeat Simple_repeat 1 40 0 1 1519 839 240 45 10 chr6 122544862 122545060 -26971977 - B3 SINE B2 -5 211 7 1 1519 373 243 0 26 chr6 122545077 122545153 -26971884 + ID SINE ID 1 74 -150 1 1519 231 320 0 62 chr6 122545083 122545163 -26971874 + tRNA-Thr-ACY tRNA tRNA 1 75 -2 1 1519 402 227 51 10 chr6 122545689 122545787 -26971250 - PB1 SINE Alu 0 127 26 1 1519 1205 49 7 0 chr6 122546167 122546310 -26970727 + B1_Mm SINE Alu 4 147 0 1 1519 780 80 16 16 chr6 122546326 122546453 -26970584 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 1 1519 627 130 30 0 chr6 122546963 122547063 -26969974 + B1_Mur2 SINE Alu 47 149 0 1 1519 597 273 21 7 chr6 122547140 122547284 -26969753 - RSINE1 SINE B4 -17 148 3 1 1519 631 221 0 9 chr6 122547294 122547408 -26969629 - PB1D7 SINE Alu -7 113 1 1 1519 592 216 96 15 chr6 122547463 122547599 -26969438 - B1_Mur1 SINE Alu -1 148 2 1 1519 268 254 132 54 chr6 122547599 122547632 -26969405 - MT2B LTR ERVL -434 167 125 1 1519 535 322 19 33 chr6 122547720 122547935 -26969102 + ID_B1 SINE B4 1 212 -12 1 1519 420 268 47 53 chr6 122547948 122548098 -26968939 + RSINE1 SINE B4 3 151 -14 1 1519 253 325 23 53 chr6 122548311 122548354 -26968683 - MER31A LTR ERV1 -245 240 202 1 1519 2082 149 46 72 chr6 122548354 122548744 -26968293 - RLTR14 LTR ERV1 0 382 3 1 1519 253 325 23 53 chr6 122548744 122548833 -26968204 - MER31A LTR ERV1 -284 201 112 1 1519 318 250 26 0 chr6 122548890 122548966 -26968071 + LSU-rRNA_Hsa rRNA rRNA 3671 3748 -1287 1 1519 503 236 102 61 chr6 122549284 122549461 -26967576 + ID_B1 SINE B4 85 271 -21 1 1519 967 172 91 5 chr6 122549494 122549693 -26967344 + B3 SINE B2 1 216 0 1 1519 23 0 0 0 chr6 122549699 122549722 -26967315 + AT_rich Low_complexity Low_complexity 1 23 0 1 1519 384 256 44 0 chr6 122549722 122549812 -26967225 + RSINE1 SINE B4 4 97 -68 1 1519 537 281 22 7 chr6 122549812 122549948 -26967089 - RSINE1 SINE B4 -24 141 4 1 1519 220 250 47 0 chr6 122549983 122550047 -26966990 - B1_Mus1 SINE Alu -59 89 23 1 1519 1437 209 183 70 chr6 122550312 122550754 -26966283 - RLTR33 LTR ERVK -42 636 145 1 1519 875 189 147 5 chr6 122550985 122551176 -26965861 - RLTR19-int LTR ERVK -3455 2682 2465 1 1519 1417 49 65 16 chr6 122551176 122551361 -26965676 - B2_Mm2 SINE B2 0 195 2 1 1519 467 285 71 111 chr6 122551515 122551839 -26965198 - MTC-int LTR MaLR -37 1221 911 1 189 3405 188 153 83 chr6 122551875 122552876 -26964161 - RLTR19-int LTR ERVK -4924 1213 143 1 1520 851 217 27 13 chr6 122553005 122553254 -26963783 - RLTR33 LTR ERVK -167 511 175 1 1520 1035 84 0 0 chr6 122553268 122553411 -26963626 + (TTTC)n Simple_repeat Simple_repeat 4 146 0 1 1520 960 56 24 0 chr6 122553427 122553553 -26963484 - B1_Mus2 SINE Alu -13 134 6 1 1520 792 165 15 0 chr6 122553613 122553746 -26963291 - B1_Mus2 SINE Alu -7 140 6 1 1520 266 73 0 24 chr6 122553774 122553816 -26963221 + (TTTTC)n Simple_repeat Simple_repeat 5 45 0 1 1520 690 183 17 0 chr6 122553821 122553941 -26963096 - B1_Mus1 SINE Alu -7 141 20 1 1520 892 151 27 0 chr6 122553960 122554106 -26962931 + B1_Mur4 SINE Alu 1 150 0 1 1520 369 0 0 0 chr6 122554114 122554155 -26962882 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1520 341 316 14 89 chr6 122554156 122554302 -26962735 - B3 SINE B2 -81 135 1 1 1520 979 232 37 9 chr6 122554326 122554543 -26962494 - MTD LTR MaLR -1 418 196 1 1520 31 0 0 0 chr6 122554558 122554589 -26962448 + AT_rich Low_complexity Low_complexity 1 31 0 1 1520 207 0 0 0 chr6 122554590 122554613 -26962424 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1520 528 162 0 0 chr6 122554633 122554713 -26962324 - B3A SINE B2 -118 80 1 1 1520 732 259 30 5 chr6 122554713 122554902 -26962135 - MTD LTR MaLR -208 211 18 1 1520 769 170 273 0 chr6 122554931 122555096 -26961941 + B3 SINE B2 2 211 -5 1 1520 49 18 0 0 chr6 122555103 122555159 -26961878 + AT_rich Low_complexity Low_complexity 1 56 0 1 1520 1484 58 0 11 chr6 122555160 122555350 -26961687 + B2_Mm2 SINE B2 1 188 -7 1 1520 492 266 0 97 chr6 122555412 122555463 -26961574 + MT2B LTR ERVL 119 154 -447 1 1520 975 79 0 0 chr6 122555463 122555590 -26961447 + B1_Mus1 SINE Alu 1 127 -21 1 1520 621 213 85 40 chr6 122555590 122555766 -26961271 + B3A SINE B2 9 192 -6 1 1520 580 164 77 62 chr6 122555868 122555998 -26961039 + B1_Mur2 SINE Alu 17 148 -1 1 1520 498 223 8 43 chr6 122556008 122556125 -26960912 + PB1D10 SINE Alu 5 117 0 1 1520 709 200 177 45 chr6 122557307 122557527 -26959510 - B4 SINE B4 -43 249 1 1 1520 305 47 0 23 chr6 122557537 122557581 -26959456 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1 1520 654 319 49 11 chr6 122557604 122557788 -26959249 - ID_B1 SINE B4 0 224 34 1 1520 486 120 0 0 chr6 122557819 122557894 -26959143 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1520 336 143 270 0 chr6 122558090 122558153 -26958884 - B1_Mm SINE Alu -11 136 57 2 1520 806 117 64 21 chr6 122558196 122558336 -26958701 - B1_Mur3 SINE Alu -3 146 1 2 1520 350 223 28 130 chr6 122558456 122558564 -26958473 + B1F SINE Alu 24 120 0 2 1520 729 204 7 7 chr6 122558850 122558998 -26958039 + B1_Mur3 SINE Alu 1 148 -1 2 1520 28 0 0 0 chr6 122559005 122559033 -26958004 + AT_rich Low_complexity Low_complexity 1 28 0 2 1520 316 224 89 57 chr6 122559034 122559055 -26957982 + ID_B1 SINE B4 78 204 -20 2 1520 474 156 128 59 chr6 122559055 122559157 -26957880 + B1_Mur3 SINE Alu 21 129 -20 2 1520 436 243 53 30 chr6 122559197 122559331 -26957706 + B3A SINE B2 27 162 -36 2 1520 252 0 0 0 chr6 122560133 122560161 -26956876 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1520 191 362 0 12 chr6 122560222 122560303 -26956734 - L2a LINE L2 -3 3423 3344 2 1520 302 294 175 64 chr6 122560319 122560382 -26956655 - ID_B1 SINE B4 -8 216 159 2 1520 285 29 0 0 chr6 122560382 122560416 -26956621 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 1520 642 247 32 0 chr6 122560421 122560575 -26956462 - RSINE1 SINE B4 -4 161 3 2 1520 302 294 175 64 chr6 122560575 122560676 -26956361 - ID_B1 SINE B4 -71 153 27 2 1520 348 43 0 0 chr6 122560704 122560750 -26956287 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1520 612 0 0 0 chr6 122560762 122560830 -26956207 + (TTCCC)n Simple_repeat Simple_repeat 5 72 0 2 1520 315 0 0 0 chr6 122560830 122560864 -26956173 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 2 1520 396 321 9 9 chr6 122560892 122560999 -26956038 + ID_B1 SINE B4 99 205 -19 2 1520 678 221 96 24 chr6 122561142 122561309 -26955728 + B3A SINE B2 2 180 -18 2 1520 26 50 0 0 chr6 122561325 122561365 -26955672 + AT_rich Low_complexity Low_complexity 1 40 0 2 1520 272 231 16 107 chr6 122561484 122561605 -26955432 + PB1D7 SINE Alu 1 110 -10 2 1520 297 216 299 0 chr6 122561898 122561912 -26955125 + B1F1 SINE Alu 24 149 0 2 1520 306 253 145 0 chr6 122561912 122561995 -26955042 + ID_B1 SINE B4 130 224 0 2 1520 180 0 0 0 chr6 122562022 122562042 -26954995 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 2 1520 876 142 7 22 chr6 122562050 122562187 -26954850 - B1_Mur4 SINE Alu -1 149 15 2 1520 1664 21 11 0 chr6 122562190 122562380 -26954657 + B2_Mm1a SINE B2 2 193 0 2 1520 363 44 0 0 chr6 122562400 122562445 -26954592 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2 1520 286 308 19 89 chr6 122562445 122562493 -26954544 - B1_Mur3 SINE Alu -2 147 107 2 1520 684 240 151 0 chr6 122562493 122562672 -26954365 - B3 SINE B2 -6 210 5 2 1520 350 304 20 5 chr6 122562672 122562780 -26954257 - B1F2 SINE Alu -43 106 2 2 1520 1039 91 77 7 chr6 122563041 122563196 -26953841 + B2_Mm2 SINE B2 2 167 -28 2 1520 357 24 0 0 chr6 122563211 122563253 -26953784 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1520 359 284 55 0 chr6 122563693 122563802 -26953235 - PB1D10 SINE Alu 0 117 3 2 1520 334 60 0 118 chr6 122563803 122563879 -26953158 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1520 297 151 0 0 chr6 122563910 122563963 -26953074 + CT-rich Low_complexity Low_complexity 3 55 0 2 1520 279 0 0 0 chr6 122563964 122563995 -26953042 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1520 229 333 152 16 chr6 122563999 122564124 -26952913 + ID_B1 SINE B4 81 222 -2 2 1520 909 197 84 20 chr6 122564141 122564343 -26952694 + B3 SINE B2 1 215 -1 2 1520 425 268 171 14 chr6 122564777 122564917 -26952120 - RSINE1 SINE B4 0 165 4 2 1520 502 170 26 2 chr6 122564949 122565056 -26951981 + B1_Mus1 SINE Alu 9 117 -3 2 1520 536 106 17 17 chr6 122565150 122565265 -26951772 + L1Md_F3 LINE L1 6470 6584 0 2 1520 239 81 54 0 chr6 122565297 122565334 -26951703 - B1F2 SINE Alu -69 80 42 2 1520 626 163 0 0 chr6 122565334 122565594 -26951443 + (TCTCTG)n Simple_repeat Simple_repeat 1 260 0 2 1520 395 0 0 162 chr6 122565595 122566123 -26950914 + (CTCTG)n Simple_repeat Simple_repeat 1 442 0 2 1520 225 276 35 0 chr6 122566129 122566187 -26950850 - ID2 SINE ID -20 63 4 2 1520 512 238 39 8 chr6 122566316 122566443 -26950594 - B1F1 SINE Alu -1 148 18 2 1520 267 262 0 0 chr6 122566593 122566673 -26950364 + CT-rich Low_complexity Low_complexity 3 82 0 2 1520 767 162 16 6 chr6 122566686 122566831 -26950206 - B1_Mur4 SINE Alu -6 144 2 2 1520 25 31 0 0 chr6 122566831 122566863 -26950174 + AT_rich Low_complexity Low_complexity 1 32 0 2 1520 1210 43 0 0 chr6 122566864 122567004 -26950033 + B1_Mus2 SINE Alu 2 141 -6 2 1520 378 0 0 0 chr6 122567005 122567047 -26949990 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1520 1224 82 35 6 chr6 122567047 122567219 -26949818 - B2_Mm1t SINE B2 -15 178 2 2 1520 538 271 130 43 chr6 122567235 122567397 -26949640 - B3 SINE B2 -6 210 35 2 1520 231 216 0 0 chr6 122567419 122567470 -26949567 - PB1D9 SINE Alu -36 84 34 2 1520 661 192 166 0 chr6 122567509 122567660 -26949377 - B3A SINE B2 -18 180 5 2 1520 280 241 76 0 chr6 122567697 122567776 -26949261 - ID_B1 SINE B4 -53 171 87 2 1520 324 0 0 0 chr6 122567814 122567850 -26949187 + (GTTTG)n Simple_repeat Simple_repeat 2 37 0 2 1520 1168 51 0 0 chr6 122567850 122567988 -26949049 - B1_Mus1 SINE Alu -9 139 2 2 1520 227 279 29 0 chr6 122568089 122568157 -26948880 - ID4 SINE ID -12 71 2 2 1520 1167 119 11 0 chr6 122568190 122568366 -26948671 + B2_Mm1t SINE B2 2 179 -14 2 1520 318 94 392 20 chr6 122568394 122568491 -26948546 + B2_Mm2 SINE B2 47 179 -16 2 1520 315 0 0 0 chr6 122568492 122568527 -26948510 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 2 1520 644 67 0 11 chr6 122568528 122568619 -26948418 + (GGAAA)n Simple_repeat Simple_repeat 4 93 0 2 1520 594 28 0 0 chr6 122568913 122568985 -26948052 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1520 246 206 77 64 chr6 122568985 122569053 -26947984 - RLTR25B LTR ERVK -517 511 442 2 1520 571 105 105 0 chr6 122568989 122569084 -26947953 - B1_Mus1 SINE Alu -43 105 1 2 1520 211 220 193 33 chr6 122569088 122569182 -26947855 - PB1D7 SINE Alu 0 120 1 2 1520 313 288 27 9 chr6 122569365 122569477 -26947560 + PB1D7 SINE Alu 2 115 -5 2 1520 1201 42 0 0 chr6 122569484 122569626 -26947411 + B1_Mus1 SINE Alu 1 142 -6 2 1520 555 96 0 0 chr6 122569626 122569709 -26947328 + (GAAA)n Simple_repeat Simple_repeat 1 83 0 2 1520 3277 73 4 100 chr6 122569714 122570234 -26946803 + L1_Mus3 LINE L1 6160 6629 -9 2 1520 24 32 0 0 chr6 122570274 122570305 -26946732 + AT_rich Low_complexity Low_complexity 1 31 0 2 1520 251 190 0 79 chr6 122570305 122570368 -26946669 + B4A SINE B4 82 139 -153 2 1520 276 132 0 14 chr6 122570321 122570380 -26946657 + B1_Mur4 SINE Alu 9 62 -87 2 1520 5318 185 127 39 chr6 122570399 122570629 -26946408 - ORR1A2-int LTR MaLR -292 1500 1260 2 1520 522 0 0 0 chr6 122570629 122570687 -26946350 + (CTG)n Simple_repeat Simple_repeat 3 60 0 2 1520 5318 185 127 39 chr6 122570687 122571835 -26945202 - ORR1A2-int LTR MaLR -533 1259 3 2 1520 1355 165 39 27 chr6 122571839 122572095 -26944942 - ORR1A2 LTR MaLR -8 319 61 2 1520 575 108 12 0 chr6 122572038 122572121 -26944916 - B1_Mur4 SINE Alu -45 105 22 2 1520 260 276 0 0 chr6 122572120 122572178 -26944859 + PB1D9 SINE Alu 63 120 0 2 1520 512 151 217 8 chr6 122572296 122572416 -26944621 + B1_Mur2 SINE Alu 5 149 0 2 1520 1038 75 15 0 chr6 122572566 122572699 -26944338 + B1_Mus2 SINE Alu 2 136 -11 2 1520 916 118 22 0 chr6 122572741 122572877 -26944160 + B1_Mus2 SINE Alu 1 139 -8 2 1520 243 0 0 0 chr6 122572877 122572904 -26944133 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2 1520 559 184 25 34 chr6 122572907 122573025 -26944012 + PB1D9 SINE Alu 2 118 -2 2 1520 191 136 45 0 chr6 122573499 122573543 -26943494 + (CATA)n Simple_repeat Simple_repeat 1 46 0 2 1520 753 65 18 9 chr6 122573564 122573673 -26943364 + HY1 scRNA scRNA 1 110 -2 2 1520 231 264 206 9 chr6 122573856 122573958 -26943079 + RSINE1 SINE B4 2 124 -41 2 1520 324 0 0 0 chr6 122573958 122573994 -26943043 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1520 1052 81 0 0 chr6 122574035 122574171 -26942866 + B1_Mus2 SINE Alu 12 147 0 2 1520 198 0 0 0 chr6 122574172 122574194 -26942843 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1520 716 86 0 9 chr6 122574194 122574300 -26942737 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 2 1520 329 241 131 94 chr6 122574722 122574770 -26942267 + B4 SINE B4 50 210 -77 2 1520 694 115 2 0 chr6 122574770 122574877 -26942160 + B1_Mus1 SINE Alu 18 126 -23 2 1520 376 246 74 58 chr6 122574880 122575019 -26942018 + B1F2 SINE Alu 8 148 -1 2 1520 480 230 30 0 chr6 122575147 122575247 -26941790 - PB1D7 SINE Alu -13 107 5 2 1520 218 270 75 43 chr6 122575261 122575284 -26941753 + ID SINE ID 60 85 -139 2 1520 359 277 75 20 chr6 122575284 122575452 -26941585 + B1_Mm SINE Alu 3 147 0 2 1520 471 239 71 43 chr6 122575521 122575661 -26941376 + B1_Mur3 SINE Alu 1 144 -5 2 1520 1052 78 35 14 chr6 122576031 122576175 -26940862 - B1_Mus1 SINE Alu -1 147 1 2 1520 341 154 30 71 chr6 122576182 122576274 -26940763 - B1_Mm SINE Alu 0 117 25 2 1520 410 278 63 8 chr6 122577179 122577306 -26939731 - B1_Mur2 SINE Alu -10 139 6 2 1520 276 363 20 0 chr6 122577225 122577327 -26939710 - ID_B1 SINE B4 -55 169 66 2 1520 550 183 43 17 chr6 122577335 122577452 -26939585 - B1_Mus2 SINE Alu -20 127 8 3 1520 267 31 0 0 chr6 122577494 122577526 -26939511 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1520 718 62 244 26 chr6 122578057 122578172 -26938865 - B1_Mus1 SINE Alu -7 141 2 3 1520 241 215 123 0 chr6 122578259 122578324 -26938713 - BC1_Mm scRNA scRNA -72 80 8 3 1520 294 261 91 0 chr6 122579141 122579229 -26937808 - B1F2 SINE Alu -13 136 41 3 1520 271 219 61 30 chr6 122579179 122579245 -26937792 - 4.5SRNA scRNA scRNA -8 86 19 3 1520 1014 74 14 14 chr6 122579401 122579539 -26937498 - B1_Mus1 SINE Alu 0 148 11 3 1520 1239 79 6 0 chr6 122579558 122579722 -26937315 - B2_Mm2 SINE B2 -30 165 1 3 1520 311 227 152 0 chr6 122580462 122580528 -26936509 + RSINE1 SINE B4 71 146 -19 3 1520 501 117 234 0 chr6 122580534 122580628 -26936409 + B1_Mur2 SINE Alu 23 138 -11 3 1520 508 200 56 19 chr6 122580789 122580896 -26936141 - PB1D9 SINE Alu 0 120 10 3 1520 1096 106 19 6 chr6 122581008 122581170 -26935867 - B2_Mm2 SINE B2 -30 165 2 3 1520 5350 17 0 2 chr6 122581257 122581844 -26935193 + MERVL-int LTR ERVL 3117 3702 -1783 3 1520 764 199 7 0 chr6 122582714 122582850 -26934187 - B1_Mus1 SINE Alu -10 138 2 3 1520 879 120 0 15 chr6 122583271 122583406 -26933631 - B1_Mur4 SINE Alu -17 133 1 3 1520 189 0 0 0 chr6 122583912 122583933 -26933104 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1520 1145 188 10 0 chr6 122583961 122584153 -26932884 - B3 SINE B2 0 216 23 3 1520 267 299 56 0 chr6 122584857 122584964 -26932073 - RLTR6-int LTR ERV1 -315 7463 7351 3 1520 685 125 0 16 chr6 122584975 122585097 -26931940 + (TTTC)n Simple_repeat Simple_repeat 2 121 0 3 1520 1200 34 0 64 chr6 122585098 122585255 -26931782 - B1_Mus2 SINE Alu 0 147 1 3 1520 221 0 0 33 chr6 122585269 122585299 -26931738 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 3 1520 275 0 0 28 chr6 122586099 122586135 -26930902 + (TTTTA)n Simple_repeat Simple_repeat 5 39 0 3 1520 872 132 0 0 chr6 122586161 122586290 -26930747 - B3 SINE B2 -87 129 1 3 1520 220 181 122 27 chr6 122586869 122586943 -26930094 - B1_Mur4 SINE Alu -69 81 1 3 1520 233 209 0 0 chr6 122587062 122587105 -26929932 + RLTR13D3 LTR ERVK 1 43 -1071 3 1520 968 32 8 24 chr6 122587369 122587496 -26929541 - B1_Mus1 SINE Alu 0 148 24 3 1520 476 221 63 84 chr6 122587374 122587517 -26929520 - B4 SINE B4 -71 221 82 3 1520 292 119 0 0 chr6 122587718 122587760 -26929277 + B2_Mm2 SINE B2 1 42 -153 3 1520 392 219 73 73 chr6 122587920 122588176 -26928861 + RLTR13D3 LTR ERVK 643 1072 -42 3 1520 924 166 0 0 chr6 122588391 122588530 -26928507 - B1_Mur4 SINE Alu -3 147 9 3 1520 494 253 123 99 chr6 122588937 122589142 -26927895 - MTD LTR MaLR -220 187 1 3 1520 572 210 8 8 chr6 122589143 122589268 -26927769 + L1_Mur3 LINE L1 4451 4575 -1305 3 1520 852 190 7 0 chr6 122589273 122589410 -26927627 + B1_Mur2 SINE Alu 3 140 -9 3 1520 1296 144 5 9 chr6 122589417 122589627 -26927410 + MTC LTR MaLR 1 209 -212 3 1520 1144 82 0 0 chr6 122589627 122589774 -26927263 + B1_Mm SINE Alu 1 147 0 3 1520 904 226 17 88 chr6 122589774 122589801 -26927236 + MTC LTR MaLR 195 221 -186 3 1520 883 107 142 45 chr6 122589834 122590010 -26927027 + B2_Mm2 SINE B2 2 194 -1 3 1520 315 0 0 0 chr6 122590010 122590045 -26926992 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1520 740 42 10 0 chr6 122590045 122590141 -26926896 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 3 1520 920 158 142 35 chr6 122590151 122590348 -26926689 + MTC LTR MaLR 203 420 -1 3 1520 503 157 22 32 chr6 122590456 122590571 -26926466 - B1_Mus2 SINE Alu -5 145 39 3 1520 272 179 0 18 chr6 122590599 122590656 -26926381 - B1_Mus2 SINE Alu -89 58 3 3 1520 228 162 0 0 chr6 122590628 122590665 -26926372 - MT2B LTR ERVL -314 287 251 3 1520 2661 72 163 143 chr6 122590666 122591168 -26925869 + RLTR1B LTR ERV1 1 512 0 3 1520 414 246 89 12 chr6 122591180 122591349 -26925688 + L1M3 LINE L1 5050 5231 -909 3 1520 263 282 13 0 chr6 122591341 122591419 -26925618 + L1_Mur3 LINE L1 5272 5350 -530 3 1520 195 42 0 0 chr6 122591419 122591443 -26925594 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 3 1520 388 126 177 47 chr6 122591443 122591539 -26925498 - PB1D9 SINE Alu -13 107 4 3 1520 959 87 0 0 chr6 122591821 122591948 -26925089 - B1_Mus1 SINE Alu -20 128 2 3 1520 23 0 0 0 chr6 122591951 122591974 -26925063 + AT_rich Low_complexity Low_complexity 1 23 0 3 1520 359 192 40 40 chr6 122592035 122592111 -26924926 - B3A SINE B2 -121 77 2 3 1520 526 246 102 8 chr6 122592140 122592267 -26924770 + ID_B1 SINE B4 78 216 -8 3 1520 905 224 38 16 chr6 122592275 122592461 -26924576 + B3 SINE B2 2 191 -25 3 1520 428 233 143 95 chr6 122592603 122592719 -26924318 - RSINE1 SINE B4 0 165 39 3 1520 1332 77 16 16 chr6 122592719 122592903 -26924134 - B2_Mm1a SINE B2 -9 184 1 3 1520 428 233 143 95 chr6 122592903 122592933 -26924104 - RSINE1 SINE B4 -127 38 12 3 1520 400 175 62 0 chr6 122592972 122593069 -26923968 - Lx9 LINE L1 -11 7633 7531 3 1520 375 23 0 0 chr6 122593086 122593130 -26923907 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1520 1489 183 147 15 chr6 122593130 122593513 -26923524 - RMER16 LTR ERVK -7 526 1 3 1520 871 191 79 0 chr6 122593513 122593691 -26923346 - Lx9 LINE L1 -161 7483 7292 3 1520 279 0 0 0 chr6 122593692 122593723 -26923314 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1520 570 266 39 39 chr6 122593733 122593782 -26923255 - ID_B1 SINE B4 -10 214 169 3 1520 2084 135 28 0 chr6 122593782 122594100 -26922937 + ORR1A2 LTR MaLR 1 327 0 3 1520 570 266 39 39 chr6 122594100 122594230 -26922807 - ID_B1 SINE B4 -56 168 35 3 1520 1233 48 0 0 chr6 122594973 122595120 -26921917 - B1_Mus1 SINE Alu -1 147 1 3 1520 23 0 0 0 chr6 122595134 122595157 -26921880 + AT_rich Low_complexity Low_complexity 1 23 0 3 1520 917 108 58 0 chr6 122595282 122595421 -26921616 + B1_Mus2 SINE Alu 1 147 0 3 1520 30 27 0 0 chr6 122595455 122595492 -26921545 + AT_rich Low_complexity Low_complexity 1 37 0 3 1520 891 168 249 0 chr6 122595492 122595665 -26921372 - B3 SINE B2 0 216 1 3 1520 736 188 172 27 chr6 122595668 122595854 -26921183 - B3 SINE B2 -3 213 1 3 1520 184 98 0 73 chr6 122596313 122596368 -26920669 + T-rich Low_complexity Low_complexity 2 52 0 3 1520 21 0 0 0 chr6 122596431 122596452 -26920585 + AT_rich Low_complexity Low_complexity 1 21 0 3 1520 860 172 46 17 chr6 122596523 122596785 -26920252 - ORR1D1 LTR MaLR -7 367 1 3 1520 2771 151 129 6 chr6 122596853 122597374 -26919663 + RMER4B LTR ERVK 1 585 0 3 1520 816 209 0 0 chr6 122597532 122597671 -26919366 - B1_Mus2 SINE Alu -6 141 3 3 1520 227 278 37 0 chr6 122597703 122597735 -26919302 - MT2B LTR ERVL -447 154 121 3 1520 1373 96 11 0 chr6 122597735 122597923 -26919114 + B2_Mm1t SINE B2 2 191 -2 3 1520 227 278 37 0 chr6 122597923 122597944 -26919093 - MT2B LTR ERVL -481 120 100 3 1520 746 242 58 16 chr6 122597947 122598136 -26918901 - MT2B LTR ERVL -404 197 1 3 1520 365 157 200 29 chr6 122598044 122598149 -26918888 - ORR1B1-int LTR MaLR -1258 705 583 3 1520 3354 157 18 88 chr6 122598179 122598865 -26918172 - ORR1B1-int LTR MaLR -1324 639 2 3 1520 317 178 0 27 chr6 122598868 122598921 -26918116 - ORR1B1 LTR MaLR 0 394 342 3 1520 270 0 0 0 chr6 122598921 122598951 -26918086 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 3 1520 317 178 0 27 chr6 122598951 122598972 -26918065 - ORR1B1 LTR MaLR -53 341 322 3 1520 1538 37 21 5 chr6 122599008 122599196 -26917841 - B2_Mm1a SINE B2 -1 192 2 3 1520 1084 109 0 0 chr6 122599237 122599384 -26917653 + B1_Mm SINE Alu 1 147 0 3 1520 1329 90 11 0 chr6 122599385 122599562 -26917475 - B2_Mm1t SINE B2 -14 179 1 3 1520 1760 132 90 6 chr6 122599568 122599880 -26917157 - ORR1B1 LTR MaLR -48 346 9 3 1520 647 223 65 56 chr6 122600032 122600246 -26916791 - B3 SINE B2 0 216 1 3 1520 323 206 17 143 chr6 122601809 122601928 -26915109 + MT2B LTR ERVL 153 256 -345 3 1520 758 223 0 7 chr6 122601831 122601971 -26915066 + B1_Mur1 SINE Alu 8 146 -3 3 1520 261 318 15 15 chr6 122602124 122602258 -26914779 + L1MB5 LINE L1 6039 6172 -2 3 1520 957 160 109 62 chr6 122602597 122602790 -26914247 - B3 SINE B2 -13 203 2 3 1520 251 286 18 0 chr6 122603090 122603146 -26913891 + ID2 SINE ID 21 77 -6 3 1520 218 176 18 73 chr6 122603456 122603511 -26913526 - B1_Mm SINE Alu -1 146 95 3 1520 276 203 16 48 chr6 122603479 122603541 -26913496 - B1_Mur4 SINE Alu -90 60 1 3 1520 1005 121 7 0 chr6 122603655 122603796 -26913241 + B1_Mur3 SINE Alu 1 142 -7 3 1520 462 161 106 9 chr6 122603891 122604004 -26913033 + Lx5 LINE L1 6927 7050 0 3 1520 510 274 67 106 chr6 122604162 122604619 -26912418 - MLT1D LTR MaLR -22 483 1 3 1520 9080 156 70 35 chr6 122605102 122606373 -26910664 - RLTR22_Mur LTR ERVK 0 1848 513 3 1520 1635 27 11 0 chr6 122606373 122606560 -26910477 - B2_Mm1a SINE B2 -3 190 2 3 1520 9080 156 70 35 chr6 122606560 122606805 -26910232 - RLTR22_Mur LTR ERVK -1336 512 279 3 1520 1207 42 7 0 chr6 122606805 122606949 -26910088 + B1_Mus2 SINE Alu 3 147 0 3 1520 9080 156 70 35 chr6 122606949 122607052 -26909985 - RLTR22_Mur LTR ERVK -1570 278 160 3 1520 1424 65 16 16 chr6 122607052 122607239 -26909798 + B2_Mm2 SINE B2 1 187 -8 3 1520 9080 156 70 35 chr6 122607239 122607398 -26909639 - RLTR22_Mur LTR ERVK -1689 159 5 3 1520 372 272 77 10 chr6 122607528 122607632 -26909405 - RSINE1 SINE B4 -51 114 4 3 1520 2918 55 0 0 chr6 122609118 122609464 -26907573 + ORR1A1 LTR MaLR 1 346 0 3 1520 251 320 163 39 chr6 122609511 122609664 -26907373 + MIRb SINE MIR 90 261 -7 3 1520 242 29 29 0 chr6 122609927 122609962 -26907075 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1520 752 269 65 114 chr6 122609967 122610412 -26906625 - RMER15 LTR ERVL -59 516 1 3 1520 590 174 410 0 chr6 122611810 122611954 -26905083 - B3 SINE B2 -12 204 2 3 1520 1598 227 77 20 chr6 122611980 122612371 -26904666 - MTD LTR MaLR 0 419 7 3 1520 369 258 62 52 chr6 122612369 122612600 -26904437 + RSINE1 SINE B4 67 291 -1 3 1520 282 174 0 21 chr6 122612905 122612952 -26904085 + ORR1E LTR MaLR 1 46 -313 3 1520 654 13 0 0 chr6 122614331 122614406 -26902631 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 3 1520 24 0 0 0 chr6 122615178 122615202 -26901835 + AT_rich Low_complexity Low_complexity 1 24 0 4 1520 1206 68 0 0 chr6 122615267 122615414 -26901623 + B1_Mus2 SINE Alu 1 147 0 4 1520 920 184 141 16 chr6 122615437 122615806 -26901231 - Lx9 LINE L1 0 7644 7198 4 1520 234 301 14 0 chr6 122616407 122616473 -26900564 + ID4 SINE ID 3 69 -14 4 1520 393 22 0 0 chr6 122616473 122616519 -26900518 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1520 252 0 0 0 chr6 122616531 122616559 -26900478 + (CAA)n Simple_repeat Simple_repeat 1 28 0 4 1520 443 84 42 0 chr6 122616645 122616716 -26900321 + (CCCCCT)n Simple_repeat Simple_repeat 1 74 0 4 1520 358 243 0 17 chr6 122616831 122616937 -26900100 + B1F SINE Alu 1 131 -18 4 1520 529 108 0 0 chr6 122617155 122617238 -26899799 - RLTR26 LTR ERVK 0 642 560 4 1520 423 94 94 0 chr6 122617274 122617338 -26899699 - RLTR26 LTR ERVK -572 70 1 4 1520 2076 138 55 14 chr6 122618320 122618666 -26898371 - RLTR14 LTR ERV1 -22 360 1 4 1520 631 269 31 28 chr6 122618666 122618872 -26898165 + ORR1D2 LTR MaLR 143 354 -5 4 1520 25 0 0 0 chr6 122618909 122618934 -26898103 + GC_rich Low_complexity Low_complexity 1 25 0 4 1520 333 284 26 44 chr6 122619230 122619344 -26897693 - RSINE1 SINE B4 0 165 54 4 1520 391 281 0 0 chr6 122619779 122619861 -26897176 + B1_Mur2 SINE Alu 63 144 -5 4 1520 250 301 169 0 chr6 122620000 122620083 -26896954 + PB1D7 SINE Alu 1 97 -23 4 1520 639 194 15 7 chr6 122620565 122620700 -26896337 + B3 SINE B2 77 212 -4 4 1520 286 211 0 126 chr6 122620751 122620838 -26896199 - B1F SINE Alu -1 148 73 4 1520 282 263 94 104 chr6 122620755 122620861 -26896176 - ID_B1 SINE B4 -2 222 118 4 1520 645 236 72 16 chr6 122620936 122621130 -26895907 - L1M2 LINE L1 -531 5760 5556 4 1520 276 30 0 0 chr6 122621132 122621165 -26895872 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4 1520 513 156 59 13 chr6 122621165 122621274 -26895763 - B1_Mur3 SINE Alu -12 108 4 4 1520 324 256 0 79 chr6 122621196 122621285 -26895752 - B4A SINE B4 -129 163 82 4 1520 512 288 40 0 chr6 122621428 122621605 -26895432 - L1_Mur3 LINE L1 -592 5288 5105 4 1520 368 320 45 32 chr6 122621700 122621855 -26895182 - MLT1A0 LTR MaLR -208 157 1 4 1520 358 281 0 10 chr6 122621881 122621978 -26895059 + PB1D10 SINE Alu 22 117 0 4 1520 710 177 21 7 chr6 122621990 122622089 -26894948 + B1_Mur2 SINE Alu 5 105 -44 4 1520 1299 82 49 0 chr6 122622089 122622272 -26894765 - B2_Mm1t SINE B2 0 193 2 4 1520 710 177 21 7 chr6 122622272 122622314 -26894723 + B1_Mur2 SINE Alu 106 147 -2 4 1520 1173 75 0 7 chr6 122622318 122622466 -26894571 + B1_Mm SINE Alu 1 147 0 4 1520 197 65 0 31 chr6 122622466 122622498 -26894539 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 4 1520 225 0 0 0 chr6 122622545 122622570 -26894467 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1520 356 147 229 10 chr6 122623083 122623179 -26893858 - PB1D10 SINE Alu 0 117 1 4 1520 1351 75 32 5 chr6 122623342 122623529 -26893508 - B2_Mm1a SINE B2 0 193 2 4 1520 240 234 15 30 chr6 122623734 122623800 -26893237 + ID4_ SINE ID 9 73 -10 4 1520 794 101 133 8 chr6 122624026 122624146 -26892891 - B1_Mus1 SINE Alu -12 136 2 4 1520 921 69 107 8 chr6 122624161 122624292 -26892745 + B1_Mm SINE Alu 4 147 0 4 1520 241 319 42 11 chr6 122624743 122624838 -26892199 - RMER17D2 LTR ERVK -470 339 242 4 1520 454 155 71 0 chr6 122624999 122625083 -26891954 + B1_Mur4 SINE Alu 61 150 0 4 1520 560 312 43 0 chr6 122625171 122625312 -26891725 - RSINE1 SINE B4 -16 149 3 4 1520 805 244 21 4 chr6 122625476 122625671 -26891366 - B3 SINE B2 0 216 9 4 1520 1024 212 34 10 chr6 122625690 122625895 -26891142 - B3 SINE B2 -5 211 2 4 1520 521 289 121 65 chr6 122625916 122626089 -26890948 - L1MC3 LINE L1 -17 7768 7587 4 1520 180 0 0 0 chr6 122626089 122626109 -26890928 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1520 1169 124 17 11 chr6 122626109 122626288 -26890749 - B2_Mm2 SINE B2 -15 180 1 4 1520 521 289 121 65 chr6 122626288 122626420 -26890617 - L1MC3 LINE L1 -199 7586 7446 4 1520 370 75 0 29 chr6 122626492 122626561 -26890476 + (TATG)n Simple_repeat Simple_repeat 2 68 0 4 1520 260 217 58 35 chr6 122626564 122626650 -26890387 - L1MC3 LINE L1 -371 7414 7339 4 1520 799 40 0 29 chr6 122626857 122626961 -26890076 + B1_Mus2 SINE Alu 47 147 0 4 1520 275 65 22 0 chr6 122626965 122627011 -26890026 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 4 1520 1157 63 0 0 chr6 122627031 122627174 -26889863 + B2_Mm2 SINE B2 1 143 -52 4 1520 420 20 0 0 chr6 122627175 122627224 -26889813 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1520 238 226 0 35 chr6 122627269 122627356 -26889681 + A-rich Low_complexity Low_complexity 1 84 0 4 1520 605 244 8 32 chr6 122627366 122627489 -26889548 + RSINE1 SINE B4 3 122 -43 4 1520 480 18 0 0 chr6 122627508 122627565 -26889472 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1520 549 222 33 87 chr6 122627570 122627753 -26889284 - B2_Mm2 SINE B2 -19 176 4 4 1520 561 212 16 48 chr6 122627922 122628046 -26888991 + PB1D7 SINE Alu 1 120 0 4 1520 346 160 188 5 chr6 122628385 122628468 -26888569 - PB1D9 SINE Alu -5 115 22 4 1520 229 170 0 145 chr6 122628459 122628521 -26888516 + B1_Mur4 SINE Alu 98 150 0 4 1520 361 328 118 0 chr6 122628532 122628651 -26888386 + RSINE1 SINE B4 11 143 -22 4 1520 378 108 0 0 chr6 122628653 122628718 -26888319 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1520 751 212 190 27 chr6 122628899 122629083 -26887954 - B3 SINE B2 -2 214 1 4 1520 936 122 0 7 chr6 122629369 122629510 -26887527 + B1_Mur4 SINE Alu 11 150 0 4 1520 1035 101 38 12 chr6 122629836 122629996 -26887041 + B2_Mm2 SINE B2 1 164 -31 4 1520 205 173 19 37 chr6 122630000 122630054 -26886983 + GA-rich Low_complexity Low_complexity 3 55 0 4 1520 1431 35 0 0 chr6 122630054 122630227 -26886810 + (GAA)n Simple_repeat Simple_repeat 3 175 0 4 1520 1217 83 6 0 chr6 122630229 122630386 -26886651 + B2_Mm1t SINE B2 3 160 -33 4 1520 396 59 0 0 chr6 122630386 122630437 -26886600 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 4 1520 470 17 0 17 chr6 122630439 122630499 -26886538 + (GAA)n Simple_repeat Simple_repeat 1 59 0 4 1520 477 223 19 0 chr6 122630499 122630602 -26886435 + PB1D9 SINE Alu 2 106 -14 4 1520 1141 36 36 0 chr6 122630610 122630750 -26886287 - B1_Mus2 SINE Alu 0 147 3 4 1520 270 0 0 0 chr6 122630765 122630795 -26886242 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 4 1520 319 228 217 46 chr6 122630812 122630964 -26886073 - RLTR24 LTR ERV1 0 529 352 4 1520 598 134 115 60 chr6 122631269 122631451 -26885586 - B2_Mm2 SINE B2 -3 192 1 4 1520 448 230 29 54 chr6 122631515 122631638 -26885399 - B1_Mur2 SINE Alu -10 137 7 4 1520 585 42 0 0 chr6 122631708 122631780 -26885257 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 1520 907 94 139 13 chr6 122631818 122631969 -26885068 - B2_Mm2 SINE B2 -25 170 1 4 1520 755 199 0 52 chr6 122632580 122632734 -26884303 - B1_Mur3 SINE Alu 0 149 4 4 1520 262 296 30 140 chr6 122632734 122632785 -26884252 - B4A SINE B4 -217 75 47 4 1520 291 268 304 18 chr6 122633179 122633262 -26883775 + ID_B1 SINE B4 4 223 -1 4 1520 429 239 0 0 chr6 122633262 122633350 -26883687 + B1_Mur2 SINE Alu 61 148 -1 4 1520 1495 53 27 0 chr6 122633361 122633548 -26883489 + B2_Mm1a SINE B2 1 192 -1 4 1520 228 353 66 88 chr6 122633578 122633851 -26883186 - ORR1D1 LTR MaLR -79 295 29 4 1520 207 0 0 0 chr6 122634128 122634151 -26882886 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1520 915 217 81 142 chr6 122634167 122634622 -26882415 + MT2B2 LTR ERVL 1 568 -16 4 1520 864 121 8 0 chr6 122634663 122634795 -26882242 + URR1B DNA MER1_type 93 225 0 4 1520 213 342 77 26 chr6 122634869 122634986 -26882051 - B4A SINE B4 -85 207 85 4 1520 324 0 0 0 chr6 122634987 122635023 -26882014 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4 1520 1295 44 0 0 chr6 122635024 122635182 -26881855 - B2_Mm2 SINE B2 -37 158 1 4 1520 278 359 22 0 chr6 122635182 122635272 -26881765 - B4A SINE B4 -197 95 4 4 1520 3473 119 60 8 chr6 122635612 122636147 -26880890 - RMER2 LTR ERV1 -4 563 1 4 1520 459 0 0 0 chr6 122636717 122636768 -26880269 + (CATA)n Simple_repeat Simple_repeat 2 52 0 4 1520 459 0 0 0 chr6 122636768 122636819 -26880218 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 4 1520 1225 41 0 0 chr6 122637342 122637489 -26879548 + B1_Mus2 SINE Alu 1 147 0 4 1520 677 237 97 17 chr6 122637694 122637870 -26879167 - B3 SINE B2 -10 206 17 4 1520 530 224 25 10 chr6 122638387 122638514 -26878523 - B1_Mur1 SINE Alu 0 149 7 4 1520 219 228 18 0 chr6 122638531 122638588 -26878449 + (TTG)n Simple_repeat Simple_repeat 2 59 0 4 1520 589 186 130 15 chr6 122638593 122638724 -26878313 - B1_Mus1 SINE Alu -1 147 2 4 1520 302 238 0 106 chr6 122638767 122638861 -26878176 - RSINE1 SINE B4 -79 86 3 4 1520 473 269 18 18 chr6 122638943 122639053 -26877984 - B3 SINE B2 -6 210 101 4 1520 358 253 11 98 chr6 122639104 122639196 -26877841 - PB1 SINE Alu -25 102 13 4 1520 561 164 9 19 chr6 122639309 122639415 -26877622 - RSINE1 SINE B4 -58 107 3 4 1520 724 113 322 7 chr6 122639522 122639665 -26877372 - B2_Mm2 SINE B2 -6 189 2 4 1520 760 132 0 17 chr6 122639863 122639979 -26877058 + B2_Mm2 SINE B2 2 115 -80 4 1520 696 110 135 35 chr6 122639991 122640132 -26876905 + URR1A DNA MER1_type 72 226 0 5 1520 1179 49 7 0 chr6 122640491 122640633 -26876404 + B1_Mus2 SINE Alu 5 147 0 5 1520 304 298 12 23 chr6 122640652 122640738 -26876299 + RSINE1 SINE B4 46 130 -35 5 1520 342 235 46 115 chr6 122640836 122640851 -26876186 + MT2B LTR ERVL 144 161 -440 5 1520 473 240 127 8 chr6 122640851 122640977 -26876060 + B1_Mus2 SINE Alu 4 144 -3 5 1520 342 235 46 115 chr6 122640977 122641091 -26875946 + MT2B LTR ERVL 162 264 -337 5 1520 982 93 14 7 chr6 122640985 122641126 -26875911 + B1_Mus2 SINE Alu 6 147 0 5 1520 250 261 0 33 chr6 122641126 122641196 -26875841 + A-rich Low_complexity Low_complexity 5 71 0 5 1520 664 228 20 20 chr6 122641196 122641344 -26875693 + B1_Mus1 SINE Alu 1 148 0 5 1520 250 261 0 33 chr6 122641344 122641364 -26875673 + A-rich Low_complexity Low_complexity 72 91 0 5 1520 603 265 77 9 chr6 122641378 122641561 -26875476 + B3 SINE B2 20 214 -2 5 1520 1435 64 5 21 chr6 122641583 122641775 -26875262 + B2_Mm2 SINE B2 1 189 -6 5 1520 462 221 127 26 chr6 122641803 122642083 -26874954 + L1_Mur3 LINE L1 5131 5479 -677 5 1520 228 200 0 0 chr6 122642299 122642339 -26874698 - RSINE1 SINE B4 -15 150 111 5 1520 393 22 0 0 chr6 122642342 122642388 -26874649 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 1520 1220 70 6 0 chr6 122642388 122642546 -26874491 - B2_Mm1t SINE B2 -33 160 2 5 1520 664 264 32 46 chr6 122642553 122642771 -26874266 - B3 SINE B2 0 216 2 5 1520 224 130 56 0 chr6 122642771 122642825 -26874212 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1520 233 134 29 49 chr6 122642880 122642982 -26874055 + (TTATA)n Simple_repeat Simple_repeat 5 104 0 5 1520 35 24 0 0 chr6 122642990 122643032 -26874005 + AT_rich Low_complexity Low_complexity 1 42 0 5 1520 1004 59 7 0 chr6 122643535 122643671 -26873366 + (TTTCC)n Simple_repeat Simple_repeat 3 139 0 5 1520 512 100 12 0 chr6 122643673 122643753 -26873284 + (TTCTC)n Simple_repeat Simple_repeat 2 82 0 5 1520 1317 109 5 25 chr6 122643769 122643967 -26873070 - B2_Mm2 SINE B2 0 195 2 5 1520 450 321 0 28 chr6 122643984 122644125 -26872912 - ID_B1 SINE B4 0 224 88 5 1520 183 292 0 40 chr6 122644131 122644181 -26872856 - MER5A DNA MER1_type -40 149 102 5 1520 180 306 42 0 chr6 122644188 122644260 -26872777 - MER5A DNA MER1_type -56 133 59 5 1520 430 264 28 0 chr6 122644412 122644518 -26872519 + PB1D10 SINE Alu 2 110 -7 5 1520 285 253 56 33 chr6 122644650 122644740 -26872297 + PB1D9 SINE Alu 8 99 -21 5 1520 829 205 79 39 chr6 122644765 122644968 -26872069 + B3 SINE B2 5 215 -1 5 1520 752 279 23 18 chr6 122645043 122645262 -26871775 + ID_B1 SINE B4 2 221 -3 5 1520 415 160 284 11 chr6 122645267 122645362 -26871675 + B1_Mus2 SINE Alu 5 125 -22 5 1520 207 238 0 60 chr6 122645362 122645429 -26871608 + GA-rich Low_complexity Low_complexity 1 63 0 5 1520 612 200 133 0 chr6 122645598 122645718 -26871319 + B1_Mur2 SINE Alu 5 140 -9 5 1520 732 63 425 8 chr6 122645725 122645852 -26871185 + B2_Mm2 SINE B2 1 180 -15 5 1520 243 0 0 0 chr6 122645854 122645881 -26871156 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1520 279 264 14 123 chr6 122646960 122647098 -26869939 + B1F2 SINE Alu 1 117 0 5 1520 249 149 84 56 chr6 122647109 122647180 -26869857 + B2_Mm2 SINE B2 1 73 -122 5 1520 1148 51 0 7 chr6 122647183 122647321 -26869716 + B1_Mus2 SINE Alu 1 137 -10 5 1520 441 0 0 0 chr6 122647321 122647370 -26869667 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 1520 782 188 158 0 chr6 122647400 122647565 -26869472 + B3 SINE B2 1 191 -25 5 1520 217 37 8 148 chr6 122647569 122647697 -26869340 + (CTAAA)n Simple_repeat Simple_repeat 5 114 0 5 1520 307 333 48 0 chr6 122647717 122647801 -26869236 + ID_B1 SINE B4 90 177 -47 5 1520 916 27 0 0 chr6 122647807 122647918 -26869119 + B1_Mm SINE Alu 36 146 -1 5 1520 1099 59 0 7 chr6 122647988 122648124 -26868913 + B1_Mus2 SINE Alu 3 137 -10 5 1520 351 0 0 0 chr6 122648124 122648163 -26868874 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1520 339 186 220 64 chr6 122648250 122648359 -26868678 + B1_Mus2 SINE Alu 9 134 -13 5 1520 198 0 0 0 chr6 122648359 122648381 -26868656 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1520 329 318 52 32 chr6 122649148 122649331 -26867706 + B3A SINE B2 35 216 0 5 1520 229 223 17 217 chr6 122649370 122649384 -26867653 + MT2B LTR ERVL 161 256 -345 5 1520 414 234 0 113 chr6 122649384 122649490 -26867547 + B1_Mur4 SINE Alu 11 104 -46 5 1520 870 61 0 17 chr6 122649673 122649789 -26867248 + B1_Mus1 SINE Alu 35 148 0 5 1520 1041 135 16 43 chr6 122649794 122649980 -26867057 - B2_Mm2 SINE B2 -14 181 1 5 1520 294 194 0 0 chr6 122650164 122650236 -26866801 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1520 1080 82 0 0 chr6 122650320 122650454 -26866583 + B1_Mus2 SINE Alu 1 134 -13 5 1520 342 0 0 0 chr6 122650456 122650494 -26866543 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1520 8098 34 2 2 chr6 122650506 122651452 -26865585 + L1Md_F2 LINE L1 5636 6581 -1 5 1520 300 212 0 70 chr6 122651473 122651544 -26865493 + B3 SINE B2 4 69 -147 5 1520 227 226 208 0 chr6 122651534 122651587 -26865450 - PB1D7 SINE Alu -56 64 1 5 1520 1387 95 16 0 chr6 122651720 122651909 -26865128 + B2_Mm2 SINE B2 1 192 -3 5 1520 393 298 61 9 chr6 122652124 122652239 -26864798 - ID_B1 SINE B4 -99 125 5 5 1520 354 209 0 147 chr6 122652266 122652395 -26864642 + MT2B LTR ERVL 155 264 -337 5 1520 792 178 20 33 chr6 122652280 122652431 -26864606 + B1_Mur3 SINE Alu 1 149 0 5 1520 666 0 0 0 chr6 122653290 122653364 -26863673 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 1520 219 225 183 0 chr6 122653611 122653682 -26863355 - PB1D7 SINE Alu 0 120 37 5 1520 223 289 0 0 chr6 122653731 122653783 -26863254 + RSINE1 SINE B4 91 142 -23 5 1520 392 279 55 62 chr6 122653814 122653959 -26863078 + ID_B1 SINE B4 81 224 0 5 1520 443 186 107 10 chr6 122653981 122654084 -26862953 + B1F2 SINE Alu 29 141 -8 5 1520 857 162 7 7 chr6 122654463 122654600 -26862437 + B1_Mur4 SINE Alu 3 139 -11 5 1520 246 62 0 0 chr6 122654600 122654632 -26862405 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 5 1520 938 157 0 0 chr6 122654885 122655019 -26862018 + B3 SINE B2 1 134 -82 5 1520 1107 43 0 14 chr6 122655033 122655175 -26861862 - B1_Mus1 SINE Alu -2 146 7 5 1520 1206 43 0 0 chr6 122655434 122655573 -26861464 + B1_Mus2 SINE Alu 1 139 -8 5 1520 207 88 0 0 chr6 122655573 122655607 -26861430 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 5 1520 189 0 0 0 chr6 122655667 122655688 -26861349 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1520 404 327 11 17 chr6 122655705 122655879 -26861158 + (TGG)n Simple_repeat Simple_repeat 2 174 0 5 1520 473 315 6 36 chr6 122655891 122656241 -26860796 + (TGG)n Simple_repeat Simple_repeat 1 339 0 5 1520 868 131 0 40 chr6 122656248 122656399 -26860638 + B1_Mur4 SINE Alu 6 150 0 5 1520 228 308 74 37 chr6 122656671 122656779 -26860258 + B1_Mus1 SINE Alu 37 148 0 5 1520 373 283 0 32 chr6 122656807 122656902 -26860135 + PB1D7 SINE Alu 29 120 0 5 1520 258 227 30 0 chr6 122656947 122657013 -26860024 + B1_Mur4 SINE Alu 75 142 -8 5 1520 896 19 0 0 chr6 122658782 122658888 -26858149 - B1_Mus2 SINE Alu 0 147 42 5 1520 300 138 69 97 chr6 122658825 122658897 -26858140 - RLTR25B LTR ERVK -519 509 440 5 1520 1379 57 23 0 chr6 122659385 122659562 -26857475 - B2_Mm1a SINE B2 0 193 13 5 1520 278 28 0 0 chr6 122659563 122659599 -26857438 - B2_Mm1t SINE B2 -157 36 1 5 1520 459 92 0 0 chr6 122659785 122659850 -26857187 + (TATG)n Simple_repeat Simple_repeat 2 66 0 5 1520 231 136 0 83 chr6 122660008 122660056 -26856981 + ID_B1 SINE B4 181 224 0 5 1520 456 235 44 107 chr6 122660341 122660421 -26856616 - B2_Mm1a SINE B2 -1 192 124 5 1520 1396 68 11 0 chr6 122660421 122660598 -26856439 + B2_Mm1t SINE B2 2 180 -13 5 1520 590 112 13 80 chr6 122660598 122660722 -26856315 - B2_Mm2 SINE B2 -70 123 1 5 1520 234 0 0 0 chr6 122660740 122660766 -26856271 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1520 1064 30 105 0 chr6 122660896 122661029 -26856008 + B1_Mm SINE Alu 1 147 0 5 1520 305 317 39 19 chr6 122661029 122661132 -26855905 + L1MEg LINE L1 1882 1986 -4098 5 1520 651 206 6 121 chr6 122661167 122661241 -26855796 - B1_Mus2 SINE Alu 0 147 73 5 1520 1377 62 34 0 chr6 122661241 122661419 -26855618 - B2_Mm1t SINE B2 -9 184 1 5 1520 651 206 6 121 chr6 122661419 122661510 -26855527 - B1_Mus2 SINE Alu -75 72 1 5 1520 189 0 0 0 chr6 122661951 122661972 -26855065 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 5 1520 1300 66 0 12 chr6 122661972 122662131 -26854906 - B2_Mm2 SINE B2 -37 158 1 5 1520 446 138 245 0 chr6 122662212 122662306 -26854731 - B1_Mur1 SINE Alu -16 133 17 5 1520 215 241 172 0 chr6 122662258 122662316 -26854721 - B4A SINE B4 -143 149 82 5 1520 790 160 187 32 chr6 122662341 122662528 -26854509 - B3 SINE B2 0 216 1 5 1520 236 258 0 43 chr6 122662532 122662601 -26854436 - B1_Mus2 SINE Alu -6 141 76 5 1520 248 53 0 26 chr6 122662791 122662830 -26854207 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1520 214 250 0 19 chr6 122662837 122662890 -26854147 - B2_Mm2 SINE B2 -116 79 28 5 1520 409 188 119 0 chr6 122662983 122663084 -26853953 - PB1D9 SINE Alu -1 119 7 5 1520 1632 32 0 0 chr6 122663643 122663830 -26853207 - B2_Mm1a SINE B2 -6 187 1 5 1520 22 0 0 0 chr6 122663833 122663855 -26853182 + AT_rich Low_complexity Low_complexity 1 22 0 5 1520 745 194 13 40 chr6 122663858 122664008 -26853029 - B1_Mus2 SINE Alu 0 147 2 6 1520 235 351 26 0 chr6 122664034 122664111 -26852926 - ID4_ SINE ID -1 82 4 6 1520 400 264 39 31 chr6 122664730 122664859 -26852178 - MTEb LTR MaLR -54 325 196 6 1520 371 279 23 47 chr6 122664876 122665004 -26852033 - B3A SINE B2 -35 163 39 6 1520 306 270 27 0 chr6 122665830 122665904 -26851133 - ID4 SINE ID -6 77 2 6 1520 410 169 0 0 chr6 122666497 122666568 -26850469 + RLTR24 LTR ERV1 459 529 0 6 1520 1073 60 0 29 chr6 122666617 122666755 -26850282 + B1_Mm SINE Alu 2 135 -12 6 1520 316 0 0 43 chr6 122666758 122666804 -26850233 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1520 672 13 0 0 chr6 122667041 122667118 -26849919 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 6 1520 21 0 0 0 chr6 122667157 122667178 -26849859 + AT_rich Low_complexity Low_complexity 1 21 0 6 1520 1656 37 0 0 chr6 122667178 122667369 -26849668 + B2_Mm1a SINE B2 1 191 -2 6 1520 586 261 19 6 chr6 122667376 122667534 -26849503 + B3A SINE B2 1 160 -38 6 1520 510 17 0 0 chr6 122667563 122667622 -26849415 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1520 1005 81 154 6 chr6 122667830 122667992 -26849045 - B2_Mm2 SINE B2 0 195 10 6 1520 579 29 0 0 chr6 122668059 122668128 -26848909 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 6 1520 605 229 0 39 chr6 122668172 122668299 -26848738 + B1_Mur1 SINE Alu 26 147 -2 6 1520 433 280 20 47 chr6 122668316 122668466 -26848571 + RSINE1 SINE B4 3 148 -17 6 1520 1403 82 11 0 chr6 122668504 122668688 -26848349 + B2_Mm1t SINE B2 3 188 -5 6 1520 583 171 0 28 chr6 122668792 122668900 -26848137 - B1_Mur4 SINE Alu -37 113 9 6 1520 22 0 0 0 chr6 122669004 122669026 -26848011 + AT_rich Low_complexity Low_complexity 1 22 0 6 1520 428 297 73 48 chr6 122669177 122669301 -26847736 - B3A SINE B2 -30 168 42 6 1520 584 188 50 0 chr6 122669305 122669406 -26847631 - B1_Mur3 SINE Alu -43 106 1 6 1520 819 129 89 22 chr6 122669525 122669647 -26847390 + B1_Mus1 SINE Alu 5 138 -10 6 1520 204 0 83 0 chr6 122669647 122669683 -26847354 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 6 1520 819 129 89 22 chr6 122669683 122669695 -26847342 + B1_Mus1 SINE Alu 139 148 0 6 1520 461 178 88 53 chr6 122669703 122669816 -26847221 + PB1D9 SINE Alu 3 119 -1 6 1520 311 321 9 9 chr6 122669870 122669980 -26847057 - PB1 SINE Alu -17 110 1 6 1520 1079 64 50 0 chr6 122670421 122670561 -26846476 + B1_Mm SINE Alu 1 147 0 6 1520 1500 54 11 0 chr6 122670567 122670752 -26846285 + B2_Mm1t SINE B2 1 187 -6 6 1520 9970 17 7 59 chr6 122670755 122671290 -26845747 + L1Md_T LINE L1 4389 4876 -1007 6 1520 1628 16 11 0 chr6 122671290 122671474 -26845563 - B2_Mm1a SINE B2 -6 187 2 6 1520 9970 17 7 59 chr6 122671474 122672201 -26844836 + L1Md_T LINE L1 4877 5586 -297 6 1520 8604 35 0 0 chr6 122672201 122673197 -26843840 + L1Md_T LINE L1 5587 6582 0 6 1520 528 179 26 13 chr6 122673267 122673420 -26843617 + (TA)n Simple_repeat Simple_repeat 1 155 0 6 1520 375 316 31 0 chr6 122673437 122673535 -26843502 + ID_B1 SINE B4 103 203 -21 6 1520 438 20 0 0 chr6 122673536 122673587 -26843450 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1520 727 169 34 0 chr6 122674095 122674213 -26842824 + MT2B LTR ERVL 1 122 -479 6 1520 703 169 132 26 chr6 122674229 122674381 -26842656 - B2_Mm2 SINE B2 -26 169 2 6 1520 988 243 42 50 chr6 122674500 122674760 -26842277 - RLTR19 LTR ERVK 0 499 242 6 1520 1702 187 79 198 chr6 122674760 122674947 -26842090 + RMER16 LTR ERVK 1 165 -368 6 1520 1171 68 0 7 chr6 122674947 122675095 -26841942 - B1_Mus1 SINE Alu -1 147 1 6 1520 1702 187 79 198 chr6 122675095 122675499 -26841538 + RMER16 LTR ERVK 166 522 -11 6 1520 736 303 38 34 chr6 122675496 122675732 -26841305 - RLTR19 LTR ERVK -254 245 9 6 1520 700 211 14 7 chr6 122675790 122675938 -26841099 - B1_Mur3 SINE Alu 0 149 1 6 1520 483 252 84 26 chr6 122675947 122676121 -26840916 - B3 SINE B2 -9 186 10 6 1520 652 214 0 31 chr6 122676137 122676267 -26840770 - B1_Mur4 SINE Alu 0 150 25 6 1520 976 240 36 103 chr6 122676259 122676645 -26840392 + MT2B LTR ERVL 88 601 0 6 1520 237 33 0 0 chr6 122676693 122676723 -26840314 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 6 1520 1170 30 0 0 chr6 122676723 122676857 -26840180 - B1_Mus2 SINE Alu -13 134 1 6 1520 693 125 30 45 chr6 122676867 122677001 -26840036 - B1_Mur4 SINE Alu -5 145 14 6 1520 333 233 8 134 chr6 122676906 122677025 -26840012 - MT2B LTR ERVL -343 258 155 6 1520 406 289 52 7 chr6 122677118 122677254 -26839783 + B4 SINE B4 84 225 -67 6 1520 414 264 51 65 chr6 122677609 122677747 -26839290 - ID_B1 SINE B4 -88 136 1 6 1520 180 0 0 0 chr6 122677764 122677784 -26839253 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1520 24 32 0 0 chr6 122679438 122679469 -26837568 + AT_rich Low_complexity Low_complexity 1 31 0 6 1520 617 164 8 101 chr6 122680401 122680511 -26836526 - PB1D9 SINE Alu -1 119 20 6 1520 453 176 274 57 chr6 122680511 122680686 -26836351 + B3 SINE B2 1 213 -3 6 1520 617 164 8 101 chr6 122680686 122680704 -26836333 - PB1D9 SINE Alu -101 19 3 6 1520 1222 48 7 0 chr6 122680744 122680890 -26836147 + B1_Mm SINE Alu 1 147 0 6 1520 216 0 0 0 chr6 122680892 122680916 -26836121 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1520 432 146 122 20 chr6 122681166 122681264 -26835773 - PB1D10 SINE Alu -3 114 7 6 1520 1275 34 0 0 chr6 122681834 122681981 -26835056 - B1_Mm SINE Alu 0 147 1 6 1520 372 244 11 11 chr6 122682055 122682142 -26834895 + RSINE1 SINE B4 4 90 -75 6 1520 232 286 54 0 chr6 122682144 122682200 -26834837 + PB1D10 SINE Alu 51 109 -8 6 1520 1422 59 0 36 chr6 122683162 122683356 -26833681 - B2_Mm2 SINE B2 -7 188 2 6 23 258 105 0 0 chr6 122683356 122683394 -26833643 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1521 1529 63 5 0 chr6 122683394 122683585 -26833452 - B2_Mm1a SINE B2 -1 192 1 6 1521 360 274 24 0 chr6 122683644 122683728 -26833309 - ID_B1 SINE B4 -49 175 90 6 1521 1247 41 0 0 chr6 122683768 122683915 -26833122 + B1_Mm SINE Alu 1 147 0 6 1521 544 180 26 35 chr6 122683946 122684061 -26832976 + PB1D9 SINE Alu 7 120 0 6 1521 418 142 35 175 chr6 122684268 122684439 -26832598 - B1_Mus2 SINE Alu 0 147 1 6 1521 198 0 0 0 chr6 122684902 122684924 -26832113 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 6 1521 669 254 112 36 chr6 122684924 122685120 -26831917 - ID_B1 SINE B4 -4 220 10 6 1521 245 260 139 25 chr6 122685130 122685209 -26831828 - PB1D7 SINE Alu -32 88 1 6 1521 217 211 0 0 chr6 122685237 122685275 -26831762 + (CTG)n Simple_repeat Simple_repeat 1 38 0 6 1521 1209 126 11 0 chr6 122685812 122685987 -26831050 + B2_Mm1t SINE B2 15 191 -2 6 1521 495 230 17 111 chr6 122687515 122687696 -26829341 - RSINE1 SINE B4 0 165 2 6 1521 573 117 154 10 chr6 122688245 122688349 -26828688 + B1_Mus2 SINE Alu 29 147 0 6 1521 275 26 0 49 chr6 122688363 122688404 -26828633 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1521 1265 88 60 16 chr6 122688515 122688700 -26828337 + B2_Mm2 SINE B2 2 194 -1 6 1521 245 246 16 47 chr6 122688875 122688939 -26828098 - RSINE1 SINE B4 -36 129 68 6 1521 263 322 11 0 chr6 122688925 122689015 -26828022 - PB1D10 SINE Alu -26 91 1 6 1521 24 0 0 0 chr6 122689170 122689194 -26827843 + AT_rich Low_complexity Low_complexity 1 24 0 6 1521 1581 23 0 11 chr6 122689217 122689396 -26827641 - B2_Mm1a SINE B2 -15 178 2 6 1521 24 0 0 0 chr6 122689397 122689421 -26827616 + AT_rich Low_complexity Low_complexity 1 24 0 6 1521 313 164 23 100 chr6 122689464 122689573 -26827464 + B1_Mm SINE Alu 13 115 -34 6 1521 366 200 21 143 chr6 122690609 122690680 -26826357 + ID_B1 SINE B4 102 223 0 6 1521 432 73 29 0 chr6 122690680 122690748 -26826289 + B1_Mur1 SINE Alu 80 149 0 6 1521 246 243 200 13 chr6 122690794 122690869 -26826168 + PB1D10 SINE Alu 1 89 -28 6 1521 260 233 10 140 chr6 122690925 122691025 -26826012 + PB1D9 SINE Alu 34 120 0 6 1521 299 290 52 78 chr6 122691266 122691382 -26825655 - PB1D7 SINE Alu -5 115 3 6 1521 276 279 0 12 chr6 122693924 122694004 -26823033 - MER33 DNA MER1_type 0 324 246 6 1521 608 216 0 17 chr6 122694004 122694122 -26822915 + RSINE1 SINE B4 4 119 -46 6 1521 207 0 0 0 chr6 122694127 122694150 -26822887 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 6 1521 410 136 0 29 chr6 122694150 122694209 -26822828 - B1_Mur3 SINE Alu -12 137 79 6 1521 379 244 23 11 chr6 122694206 122694293 -26822744 + B3 SINE B2 125 212 -4 6 1521 198 167 0 0 chr6 122694297 122694333 -26822704 + T-rich Low_complexity Low_complexity 1 36 0 6 1521 186 43 0 0 chr6 122695688 122695711 -26821326 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1521 24 0 0 0 chr6 122695728 122695752 -26821285 + AT_rich Low_complexity Low_complexity 1 24 0 6 1521 307 272 96 10 chr6 122695858 122695962 -26821075 - MER33 DNA MER1_type -139 185 73 6 1521 1132 75 0 26 chr6 122696030 122696181 -26820856 - B1_Mus1 SINE Alu 0 148 2 6 1521 488 269 25 25 chr6 122696609 122696731 -26820306 - RSINE1 SINE B4 -42 123 2 6 1521 1138 43 43 0 chr6 122696819 122696960 -26820077 + B1_Mm SINE Alu 1 147 0 6 1521 356 323 79 90 chr6 122697095 122697169 -26819868 + B4A SINE B4 17 84 -208 6 1521 576 219 39 88 chr6 122697169 122697374 -26819663 + B3A SINE B2 4 198 0 6 1521 356 323 79 90 chr6 122697374 122697578 -26819459 + B4A SINE B4 85 292 0 6 1521 1119 82 14 7 chr6 122697793 122697940 -26819097 + B1_Mus1 SINE Alu 1 148 0 6 1521 206 118 0 0 chr6 122698026 122698060 -26818977 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1521 473 204 47 28 chr6 122698062 122698168 -26818869 - B1_Mur1 SINE Alu 0 149 42 6 1521 1234 81 40 17 chr6 122698492 122698668 -26818369 + B2_Mm2 SINE B2 1 180 -15 7 1521 315 0 0 0 chr6 122698759 122698794 -26818243 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1521 555 16 0 0 chr6 122698794 122698857 -26818180 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1521 467 214 117 0 chr6 122698860 122698963 -26818074 - ID_B1 SINE B4 -33 191 77 7 1521 713 225 7 21 chr6 122699016 122699161 -26817876 - B1_Mus1 SINE Alu 0 148 6 7 1521 520 234 50 11 chr6 122699275 122699433 -26817604 + B3 SINE B2 9 176 -19 7 1521 685 0 12 12 chr6 122699550 122699636 -26817401 + (GAAA)n Simple_repeat Simple_repeat 1 86 0 7 1521 1290 82 49 0 chr6 122699637 122699820 -26817217 + B2_Mm1a SINE B2 1 192 -1 7 1521 620 26 0 13 chr6 122699832 122699911 -26817126 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 7 1521 1164 136 0 0 chr6 122699976 122700145 -26816892 - B2_Mm2 SINE B2 -26 169 1 7 1521 350 266 124 102 chr6 122700322 122700461 -26816576 - B4 SINE B4 -60 232 97 7 1521 1085 68 13 26 chr6 122700461 122700612 -26816425 - B1_Mur4 SINE Alu 0 150 2 7 1521 350 266 124 102 chr6 122700612 122700698 -26816339 - B4 SINE B4 -196 96 2 7 1521 640 303 47 42 chr6 122700804 122700997 -26816040 - ID_B1 SINE B4 -30 194 1 7 1521 225 0 0 0 chr6 122701012 122701037 -26816000 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1521 293 313 86 17 chr6 122701180 122701297 -26815740 - B1_Mur3 SINE Alu -20 129 5 7 1521 627 272 39 28 chr6 122701206 122701384 -26815653 - ID_B1 SINE B4 -43 181 2 7 1521 406 257 152 0 chr6 122701425 122701530 -26815507 - RSINE1 SINE B4 -33 132 12 7 1521 319 276 65 106 chr6 122701615 122701659 -26815378 + B4 SINE B4 58 220 -72 7 1521 362 174 0 164 chr6 122701643 122701753 -26815284 + MT2B LTR ERVL 173 264 -337 7 1521 822 122 0 24 chr6 122701659 122701785 -26815252 + B1_Mur4 SINE Alu 22 144 -6 7 1521 270 0 0 0 chr6 122701786 122701816 -26815221 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1521 1352 63 11 6 chr6 122702259 122702434 -26814603 - B2_Mm2 SINE B2 -18 177 2 7 1521 401 239 105 57 chr6 122702445 122702569 -26814468 - B1F2 SINE Alu -5 144 15 7 1521 23 54 0 0 chr6 122702601 122702638 -26814399 + AT_rich Low_complexity Low_complexity 1 37 0 7 1521 214 289 39 0 chr6 122702653 122702705 -26814332 - RSINE1 SINE B4 -83 82 29 7 1521 513 301 98 22 chr6 122702792 122703049 -26813988 + MLT2C2 LTR ERVL 46 317 -80 7 1521 333 110 35 16 chr6 122703115 122703184 -26813853 + B1_Mus2 SINE Alu 84 149 0 7 1521 422 209 48 0 chr6 122703200 122703303 -26813734 + MLT1-int LTR MaLR 66 173 -1198 7 1521 423 260 30 0 chr6 122703303 122703403 -26813634 + RSINE1 SINE B4 2 104 -61 7 1521 267 321 25 74 chr6 122703403 122703424 -26813613 + B3A SINE B2 1 115 -83 7 1521 192 70 70 0 chr6 122703622 122703665 -26813372 + (TTTTC)n Simple_repeat Simple_repeat 4 49 0 7 1521 358 226 48 19 chr6 122703943 122704047 -26812990 + PB1D10 SINE Alu 3 109 -8 7 1521 1338 96 16 5 chr6 122704059 122704247 -26812790 - B2_Mm1t SINE B2 -1 192 3 7 1521 3056 53 0 3 chr6 122704351 122704729 -26812308 + L1Md_F2 LINE L1 6194 6570 -12 7 1521 238 215 88 44 chr6 122705363 122705431 -26811606 - tRNA-Ala-GCA tRNA tRNA -3 72 2 7 1521 404 263 33 39 chr6 122705474 122705656 -26811381 + L1M3 LINE L1 5082 5262 -878 7 1521 599 122 2 0 chr6 122705665 122705763 -26811274 + B1_Mur3 SINE Alu 43 141 -8 7 1521 267 221 0 72 chr6 122705689 122705772 -26811265 + ID_B1 SINE B4 146 222 -2 7 1521 378 0 0 0 chr6 122705886 122705928 -26811109 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1521 272 277 235 0 chr6 122705936 122706055 -26810982 + ID_B1 SINE B4 78 224 0 7 1521 475 222 0 0 chr6 122706161 122706242 -26810795 + B3 SINE B2 80 160 -56 7 1521 441 0 0 0 chr6 122706248 122706297 -26810740 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1521 237 149 0 78 chr6 122706479 122706530 -26810507 + ID_B1 SINE B4 176 222 -2 7 1521 435 238 20 10 chr6 122706676 122706778 -26810259 - PB1D7 SINE Alu -16 104 2 7 1521 1228 265 79 75 chr6 122706785 122707266 -26809771 + RCHARR1 DNA MER1_type 3 485 -489 7 1521 262 257 254 55 chr6 122707278 122707397 -26809640 + ID_B1 SINE B4 1 128 -96 7 1521 210 37 0 0 chr6 122707397 122707424 -26809613 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1521 262 257 254 55 chr6 122707424 122707485 -26809552 + ID_B1 SINE B4 129 217 -7 7 1521 1453 49 27 0 chr6 122707497 122707680 -26809357 + B2_Mm1a SINE B2 1 188 -5 7 1521 708 176 44 0 chr6 122707732 122707868 -26809169 + B1_Mur4 SINE Alu 1 142 -8 7 1521 231 222 0 0 chr6 122707886 122707922 -26809115 - B4A SINE B4 -224 68 33 7 1521 536 247 41 0 chr6 122708070 122708216 -26808821 - L1MC2 LINE L1 -518 5826 5675 7 1521 293 230 76 48 chr6 122708234 122708339 -26808698 - ID_B1 SINE B4 -9 215 108 7 1521 729 207 66 10 chr6 122708387 122708576 -26808461 - B3 SINE B2 0 198 6 7 1521 374 278 216 9 chr6 122708598 122708714 -26808323 - B1_Mur1 SINE Alu 0 149 8 7 1521 427 53 12 50 chr6 122709113 122709193 -26807844 + (CAAA)n Simple_repeat Simple_repeat 2 78 0 7 1521 31 0 0 0 chr6 122709588 122709619 -26807418 + AT_rich Low_complexity Low_complexity 1 31 0 7 1521 634 148 122 0 chr6 122709635 122709750 -26807287 + B1_Mur4 SINE Alu 6 134 -16 7 1521 432 180 135 0 chr6 122709746 122709835 -26807202 - B1_Mm SINE Alu -44 103 3 7 1521 278 258 200 30 chr6 122709835 122709865 -26807172 - MT2B LTR ERVL -432 169 123 7 1521 247 200 0 0 chr6 122709914 122709954 -26807083 + ID2 SINE ID 26 65 -18 7 1521 223 298 18 0 chr6 122709954 122709971 -26807066 + ID SINE ID 27 84 -140 7 1521 541 263 85 6 chr6 122709974 122710150 -26806887 + B3A SINE B2 2 191 -7 7 1521 772 215 21 7 chr6 122710156 122710301 -26806736 + B1_Mus2 SINE Alu 1 147 0 7 1521 221 114 0 22 chr6 122710313 122710335 -26806702 + (TAA)n Simple_repeat Simple_repeat 2 23 0 7 1521 1402 65 0 52 chr6 122710335 122710529 -26806508 + B2_Mm1a SINE B2 2 185 -8 7 1521 221 114 0 22 chr6 122710529 122710551 -26806486 + (TAA)n Simple_repeat Simple_repeat 3 23 0 7 1521 533 227 88 29 chr6 122710796 122710932 -26806105 + B1_Mur1 SINE Alu 5 148 -1 7 1521 352 119 52 15 chr6 122711641 122711731 -26805306 - B1_Mus2 SINE Alu 0 150 50 7 1521 357 127 46 31 chr6 122711883 122711948 -26805089 - PB1D9 SINE Alu 0 120 55 7 1521 598 229 27 54 chr6 122711989 122712137 -26804900 - B1F SINE Alu -5 144 1 7 1521 325 267 47 0 chr6 122712152 122712238 -26804799 - PB1D10 SINE Alu -7 110 21 7 1521 323 247 196 30 chr6 122712286 122712318 -26804719 - B4 SINE B4 -43 249 149 7 1521 498 157 52 5 chr6 122712318 122712428 -26804609 - B1_Mus1 SINE Alu -3 117 8 7 1521 323 247 196 30 chr6 122712428 122712452 -26804585 - B4 SINE B4 -43 148 65 7 1521 643 233 13 27 chr6 122712555 122712705 -26804332 - ID_B1 SINE B4 0 224 77 7 1521 255 200 0 39 chr6 122712751 122712796 -26804241 - MTD LTR MaLR 0 419 375 7 1521 968 68 105 0 chr6 122712796 122712929 -26804108 + B1_Mm SINE Alu 1 147 0 7 1521 197 33 33 0 chr6 122712937 122712967 -26804070 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 7 1521 275 194 16 31 chr6 122713356 122713420 -26803617 + MER58D DNA MER1_type 324 386 0 7 1521 595 243 21 0 chr6 122715723 122715863 -26801174 + B1_Mur2 SINE Alu 1 143 -6 7 1521 300 111 0 0 chr6 122716103 122716148 -26800889 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1521 512 24 49 0 chr6 122716467 122716549 -26800488 + (TG)n Simple_repeat Simple_repeat 2 87 0 7 1521 388 268 9 76 chr6 122716618 122716723 -26800314 + B1F2 SINE Alu 32 129 -20 7 1521 396 110 10 125 chr6 122716926 122716955 -26800082 - Lx2 LINE L1 0 6997 6978 7 1521 1667 36 0 0 chr6 122716955 122717147 -26799890 - B2_Mm1t SINE B2 0 193 2 7 1521 396 110 10 125 chr6 122717147 122717221 -26799816 - Lx2 LINE L1 -20 6977 6906 7 1521 230 333 69 0 chr6 122717517 122717589 -26799448 - ID4_ SINE ID -6 77 1 7 1521 767 137 97 0 chr6 122717699 122717823 -26799214 - B1_Mur4 SINE Alu -13 137 2 7 1521 372 211 26 0 chr6 122717879 122717955 -26799082 - ID4 SINE ID -4 79 2 7 1521 543 167 49 0 chr6 122718019 122718121 -26798916 - PB1D9 SINE Alu 0 120 14 7 1521 396 0 0 0 chr6 122718131 122718175 -26798862 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1521 708 74 0 0 chr6 122718206 122718301 -26798736 + (TC)n Simple_repeat Simple_repeat 2 96 0 7 1521 253 246 0 58 chr6 122718314 122718383 -26798654 - B3A SINE B2 -10 188 124 7 1521 213 241 288 85 chr6 122718560 122718678 -26798359 + B4A SINE B4 77 218 -74 7 1521 341 235 77 58 chr6 122718583 122718687 -26798350 + PB1D10 SINE Alu 10 115 -2 7 1521 181 299 111 49 chr6 122718823 122718904 -26798133 + MER5A DNA MER1_type 50 135 -54 7 1521 570 212 113 8 chr6 122719032 122719165 -26797872 + B1_Mus2 SINE Alu 1 147 0 7 1521 591 184 93 66 chr6 122719549 122719700 -26797337 + RSINE1 SINE B4 11 165 0 7 1521 590 193 50 29 chr6 122720498 122720637 -26796400 - B1_Mur1 SINE Alu -2 147 6 7 1521 455 200 77 65 chr6 122720637 122720653 -26796384 - ID_B1 SINE B4 -1 223 67 7 1521 266 191 0 0 chr6 122720979 122721026 -26796011 + B1_Mur3 SINE Alu 60 106 -43 7 1521 353 190 34 25 chr6 122720990 122721109 -26795928 - RMER17A LTR ERVK -292 459 340 7 1521 236 219 62 15 chr6 122721118 122721183 -26795854 - ID4 SINE ID -4 79 12 8 1521 207 0 0 0 chr6 122721339 122721362 -26795675 + (TC)n Simple_repeat Simple_repeat 2 24 0 8 1521 1280 20 0 7 chr6 122721372 122721519 -26795518 - B1_Mus2 SINE Alu 0 147 2 8 1521 882 173 0 13 chr6 122721818 122721970 -26795067 + B1_Mur4 SINE Alu 1 150 0 8 1521 24 0 0 0 chr6 122721973 122721997 -26795040 + AT_rich Low_complexity Low_complexity 1 24 0 8 1521 2982 77 20 2 chr6 122722156 122722549 -26794488 + MTB LTR MaLR 1 400 0 8 1521 253 257 81 60 chr6 122723297 122723446 -26793591 + RMER17A2 LTR ERVK 247 398 -508 8 1521 1110 78 6 12 chr6 122723464 122723633 -26793404 + (GAA)n Simple_repeat Simple_repeat 2 169 0 8 1521 180 0 0 0 chr6 122723633 122723653 -26793384 + (CAG)n Simple_repeat Simple_repeat 1 20 0 8 1521 290 192 25 76 chr6 122724013 122724092 -26792945 - ID SINE ID -137 87 13 8 1521 333 150 16 16 chr6 122724031 122724092 -26792945 - ID4_ SINE ID -10 73 13 8 1521 1454 58 16 0 chr6 122724241 122724430 -26792607 + B2_Mm1a SINE B2 2 193 0 8 1521 1068 94 77 16 chr6 122724445 122724628 -26792409 + B2_Mm2 SINE B2 2 195 0 8 1521 381 211 0 0 chr6 122724660 122724731 -26792306 + B1_Mur4 SINE Alu 78 148 -2 8 1521 649 251 20 87 chr6 122724768 122724964 -26792073 - B3A SINE B2 -15 183 1 8 1521 461 287 8 15 chr6 122725004 122725135 -26791902 + B1_Mur1 SINE Alu 1 130 -19 8 1521 212 0 36 0 chr6 122725139 122725167 -26791870 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1521 377 236 0 0 chr6 122725491 122725563 -26791474 + RSINE1 SINE B4 3 74 -91 8 1521 803 29 0 10 chr6 122725839 122725942 -26791095 + (GAAA)n Simple_repeat Simple_repeat 3 104 0 8 1521 1026 186 49 0 chr6 122726024 122726228 -26790809 - B3 SINE B2 -1 215 2 8 1521 715 156 29 22 chr6 122726729 122726867 -26790170 - B1_Mus1 SINE Alu -5 143 5 8 1521 498 17 0 0 chr6 122727582 122727641 -26789396 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 8 1521 559 208 20 8 chr6 122727643 122727759 -26789278 - B1_Mur4 SINE Alu -5 115 6 8 1521 240 111 0 0 chr6 122728002 122728038 -26788999 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1521 445 246 181 16 chr6 122728058 122728240 -26788797 + B3 SINE B2 1 212 -4 8 1521 1126 147 10 25 chr6 122728312 122728480 -26788557 + B2_Mm2 SINE B2 2 168 -27 8 1521 1464 64 11 0 chr6 122728480 122728668 -26788369 - B2_Mm1t SINE B2 -3 190 1 8 1521 1126 147 10 25 chr6 122728668 122728695 -26788342 + B2_Mm2 SINE B2 169 194 -1 8 1521 422 216 23 0 chr6 122728797 122728885 -26788152 + B1_Mm SINE Alu 1 90 -57 8 1521 431 325 153 0 chr6 122728878 122729035 -26788002 + B4A SINE B4 107 287 -5 8 1521 241 319 11 11 chr6 122729048 122729140 -26787897 + (CA)n Simple_repeat Simple_repeat 1 92 0 8 1521 377 336 0 0 chr6 122729812 122729922 -26787115 + B4A SINE B4 179 288 -4 8 1521 608 209 56 28 chr6 122730203 122730286 -26786751 + ID_B1 SINE B4 77 163 -61 8 1521 894 126 110 30 chr6 122730286 122730436 -26786601 + B2_Mm2 SINE B2 1 163 -32 8 1521 339 25 0 0 chr6 122730436 122730476 -26786561 + (CAAT)n Simple_repeat Simple_repeat 2 41 0 8 1521 894 126 110 30 chr6 122730476 122730489 -26786548 + B2_Mm2 SINE B2 164 176 -19 8 1521 608 209 56 28 chr6 122730489 122730548 -26786489 + ID_B1 SINE B4 164 223 -1 8 1521 392 250 0 32 chr6 122730548 122730643 -26786394 + RSINE1 SINE B4 11 102 -63 8 1521 445 234 149 0 chr6 122730797 122730904 -26786133 - RSINE1 SINE B4 -40 125 3 8 1521 248 260 9 94 chr6 122731462 122731568 -26785469 + B1F SINE Alu 21 149 0 8 1521 525 196 85 57 chr6 122731715 122731856 -26785181 + B1_Mur1 SINE Alu 5 149 0 8 1521 187 200 57 0 chr6 122731906 122731941 -26785096 - L3b LINE CR1 -253 229 193 8 1521 350 39 39 0 chr6 122732923 122732974 -26784063 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 8 1521 969 157 0 7 chr6 122732974 122733122 -26783915 - B1_Mus1 SINE Alu -1 147 1 8 1521 906 187 113 6 chr6 122733109 122733286 -26783751 - B3 SINE B2 -1 215 20 8 1521 228 67 0 0 chr6 122733328 122733358 -26783679 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1521 816 255 33 0 chr6 122733358 122733531 -26783506 - B3A SINE B2 -17 181 3 8 1521 448 136 12 0 chr6 122733568 122733649 -26783388 - L1Md_F2 LINE L1 -1 6581 6500 8 1521 219 139 0 0 chr6 122733660 122733696 -26783341 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1521 1127 75 0 26 chr6 122733696 122733847 -26783190 - B1_Mm SINE Alu 0 147 1 8 1521 258 223 2 0 chr6 122733878 122733941 -26783096 + PB1D9 SINE Alu 1 64 -53 8 1521 266 298 72 31 chr6 122734238 122734335 -26782702 + MER5A DNA MER1_type 83 183 -6 8 1521 535 292 6 24 chr6 122734385 122734550 -26782487 + RSINE1 SINE B4 3 164 -1 8 1521 269 282 100 0 chr6 122734594 122734704 -26782333 + Charlie2a DNA MER1_type 1464 1584 -1277 8 1521 1159 74 0 0 chr6 122734768 122734916 -26782121 - B1_Mus1 SINE Alu 0 148 1 8 1521 387 233 11 11 chr6 122735090 122735177 -26781860 + B3 SINE B2 124 210 -6 8 1521 450 0 0 0 chr6 122735200 122735250 -26781787 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1521 300 264 110 0 chr6 122735806 122735897 -26781140 + MTEb LTR MaLR 275 375 -4 8 1521 246 203 119 0 chr6 122736683 122736742 -26780295 - ID4 SINE ID -13 70 5 8 1521 1195 55 0 7 chr6 122737201 122737347 -26779690 + B1_Mus2 SINE Alu 1 145 -2 8 1521 183 42 0 0 chr6 122737361 122737385 -26779652 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 8 1521 746 157 0 23 chr6 122737701 122737831 -26779206 - ID_B1 SINE B4 0 224 98 8 1521 483 300 61 39 chr6 122737834 122738063 -26778974 - RMER2 LTR ERV1 0 567 334 8 1521 943 129 0 45 chr6 122738402 122738556 -26778481 - B1_Mur3 SINE Alu -2 147 1 8 1521 598 225 15 37 chr6 122738657 122738791 -26778246 - B1F1 SINE Alu 0 149 19 8 1521 464 295 51 67 chr6 122738791 122738835 -26778202 - ID_B1 SINE B4 -1 223 49 8 1521 1385 85 5 21 chr6 122739141 122739334 -26777703 - B2_Mm1a SINE B2 -3 190 1 8 1521 218 56 0 27 chr6 122739353 122739390 -26777647 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 8 1521 1027 47 55 0 chr6 122739390 122739517 -26777520 - B1_Mm SINE Alu -9 138 5 8 1521 390 339 92 37 chr6 122739529 122739854 -26777183 + L2 LINE L2 2660 3002 -417 8 1521 273 237 51 0 chr6 122739867 122739926 -26777111 - ID4_ SINE ID -20 63 2 8 1521 308 247 11 138 chr6 122740119 122740213 -26776824 + B3A SINE B2 111 192 -6 8 1521 567 210 8 25 chr6 122740269 122740391 -26776646 + ID_B1 SINE B4 105 224 0 8 1521 420 270 39 26 chr6 122740918 122741074 -26775963 + RSINE1 SINE B4 4 161 -4 8 1521 21 0 0 0 chr6 122741202 122741223 -26775814 + AT_rich Low_complexity Low_complexity 1 21 0 8 1521 29 70 0 0 chr6 122741260 122741317 -26775720 + AT_rich Low_complexity Low_complexity 1 57 0 8 1521 1036 93 153 6 chr6 122741337 122741500 -26775537 + B2_Mm2 SINE B2 1 187 -8 8 1521 207 0 0 0 chr6 122743343 122743366 -26773671 + (C)n Simple_repeat Simple_repeat 1 23 0 8 1521 2573 156 98 60 chr6 122743586 122744099 -26772938 - RMER4B LTR ERVK -12 573 42 8 1521 572 71 0 23 chr6 122744099 122744186 -26772851 + (TTCC)n Simple_repeat Simple_repeat 1 85 0 8 1521 954 165 37 16 chr6 122744187 122744378 -26772659 - B2_Mm2 SINE B2 0 195 1 8 1521 285 104 0 0 chr6 122744378 122744426 -26772611 - RMER4B LTR ERVK -537 48 1 8 1521 1157 83 0 216 chr6 122744589 122744834 -26772203 + B2_Mm2 SINE B2 1 192 -3 8 1521 368 269 58 0 chr6 122744873 122744977 -26772060 + PB1D10 SINE Alu 5 114 -3 8 1521 478 294 192 34 chr6 122745871 122746110 -26770927 + RMER15 LTR ERVL 299 575 0 8 1521 815 132 7 7 chr6 122746508 122746645 -26770392 + B1_Mur4 SINE Alu 13 149 -1 8 1521 492 291 99 39 chr6 122747242 122747424 -26769613 + ID_B1 SINE B4 23 215 -9 8 1521 453 115 0 0 chr6 122747425 122747503 -26769534 + (GAAA)n Simple_repeat Simple_repeat 4 81 0 8 1521 672 170 55 75 chr6 122747503 122747649 -26769388 + B1_Mur1 SINE Alu 2 144 -5 8 1521 1369 55 66 0 chr6 122748051 122748232 -26768805 + B2_Mm2 SINE B2 2 194 -1 8 1521 186 128 0 0 chr6 122748326 122748365 -26768672 + (A)n Simple_repeat Simple_repeat 1 39 0 8 1521 216 292 100 40 chr6 122748371 122748471 -26768566 + MIR3 SINE MIR 88 193 -15 8 1521 933 223 23 55 chr6 122748487 122748705 -26768332 - B3 SINE B2 0 216 6 8 1521 333 244 16 123 chr6 122749004 122749049 -26767988 - L1M5 LINE L1 -378 5805 5759 8 1521 1310 88 22 6 chr6 122749049 122749232 -26767805 - B2_Mm1a SINE B2 -7 186 1 8 1521 333 248 17 125 chr6 122749232 122749330 -26767707 - L1M5 LINE L1 -424 5759 5678 8 1521 594 168 158 8 chr6 122749339 122749459 -26767578 + B1_Mur2 SINE Alu 12 149 0 8 1521 1051 105 77 50 chr6 122749660 122749811 -26767226 + B2_Mm2 SINE B2 1 161 -34 8 1521 558 0 0 0 chr6 122749811 122749873 -26767164 + (GAAA)n Simple_repeat Simple_repeat 1 62 0 8 1521 1347 91 11 11 chr6 122749876 122750065 -26766972 + B2_Mm1a SINE B2 3 191 -2 8 1521 1051 105 77 50 chr6 122750065 122750090 -26766947 + B2_Mm2 SINE B2 162 186 -9 8 1521 1294 93 50 0 chr6 122750426 122750608 -26766429 + B2_Mm2 SINE B2 1 191 -4 8 1521 444 247 0 0 chr6 122750618 122750695 -26766342 + RSINE1 SINE B4 2 78 -87 8 1521 477 0 0 0 chr6 122750721 122750774 -26766263 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1521 267 242 124 21 chr6 122750779 122750876 -26766161 + BC1_Mm scRNA scRNA 1 107 -45 8 1521 371 237 123 33 chr6 122751231 122751353 -26765684 + B1F1 SINE Alu 15 147 -2 8 1521 213 270 0 0 chr6 122751357 122751420 -26765617 + ID4 SINE ID 7 69 -14 9 1521 210 229 21 0 chr6 122751690 122751738 -26765299 + (CCG)n Simple_repeat Simple_repeat 2 50 0 9 1521 463 222 0 11 chr6 122752525 122752616 -26764421 - ID_B1 SINE B4 -2 222 133 9 1521 685 216 197 30 chr6 122752624 122752858 -26764179 + RMER21B LTR ERV1 275 547 -295 9 1521 1165 64 0 0 chr6 122752887 122753027 -26764010 - B1_Mus1 SINE Alu -8 140 1 9 1521 402 152 30 20 chr6 122753366 122753467 -26763570 + CT-rich Low_complexity Low_complexity 3 104 0 9 1521 293 146 0 0 chr6 122753472 122753520 -26763517 - B3 SINE B2 -167 49 2 9 1521 451 248 27 27 chr6 122753523 122753635 -26763402 - PB1D7 SINE Alu 0 120 9 9 1521 264 261 86 98 chr6 122753642 122753816 -26763221 + L1M5 LINE L1 5528 5699 -474 9 1521 680 136 184 0 chr6 122753851 122753976 -26763061 - B1_Mus1 SINE Alu 0 148 1 9 1521 266 253 0 0 chr6 122754314 122754389 -26762648 + Lx5 LINE L1 6976 7050 0 9 1521 801 142 66 15 chr6 122754787 122754923 -26762114 - B1_Mm SINE Alu -3 144 2 9 1521 1118 103 32 0 chr6 122754974 122755153 -26761884 + B2_Mm2 SINE B2 2 186 -7 9 1521 241 91 0 0 chr6 122755222 122755255 -26761782 - B3 SINE B2 -182 34 2 9 1521 1100 103 0 0 chr6 122755260 122755406 -26761631 - B1_Mus1 SINE Alu 0 148 3 9 1521 530 239 147 6 chr6 122755428 122755605 -26761432 - B3 SINE B2 -14 202 1 9 1521 675 190 35 35 chr6 122755612 122755754 -26761283 - B1_Mur1 SINE Alu -7 142 1 9 1521 1284 104 39 0 chr6 122755788 122755970 -26761067 + B2_Mm2 SINE B2 2 190 -5 9 1521 312 304 0 25 chr6 122755984 122756065 -26760972 - RSINE1 SINE B4 0 165 87 9 1521 1246 41 0 0 chr6 122756076 122756223 -26760814 - B1_Mm SINE Alu 0 147 1 9 1521 242 259 19 0 chr6 122756243 122756297 -26760740 - B4 SINE B4 -211 81 27 9 1521 3509 158 77 5 chr6 122756370 122756982 -26760055 - Lx5 LINE L1 -3 7047 6392 9 1521 302 330 0 72 chr6 122757137 122757248 -26759789 + B3A SINE B2 58 160 -38 9 1521 741 173 8 23 chr6 122757235 122757365 -26759672 + B1F2 SINE Alu 19 146 -3 9 1521 201 39 0 0 chr6 122757365 122757391 -26759646 + (TA)n Simple_repeat Simple_repeat 2 27 0 9 1521 702 219 15 83 chr6 122757607 122757811 -26759226 - B3A SINE B2 -6 192 3 9 1521 315 268 124 0 chr6 122757911 122758008 -26759029 + PB1D10 SINE Alu 2 110 -7 9 1521 3436 123 55 11 chr6 122758125 122758668 -26758369 + RMER2 LTR ERV1 1 567 0 9 1521 1389 75 26 11 chr6 122759165 122759354 -26757683 - B2_Mm2 SINE B2 -2 193 2 9 1521 566 189 63 0 chr6 122759534 122759645 -26757392 - B1_Mm SINE Alu -29 118 1 9 1521 372 191 196 7 chr6 122759818 122759971 -26757066 + RMER17C LTR ERVK 95 276 -134 9 1521 436 214 28 38 chr6 122760235 122760360 -26756677 - B1_Mus1 SINE Alu 0 120 7 9 1521 485 185 123 53 chr6 122760419 122760533 -26756504 - ID_B1 SINE B4 -25 199 78 9 1521 2976 177 84 13 chr6 122762062 122762670 -26754367 + Lx2B LINE L1 6345 6995 -5 9 1521 615 224 56 69 chr6 122762815 122763031 -26754006 - B3 SINE B2 -2 214 2 9 1521 449 268 137 26 chr6 122763035 122763229 -26753808 - B3A SINE B2 0 216 3 9 1521 334 284 68 41 chr6 122763257 122763404 -26753633 - L1MC5 LINE L1 -120 7841 7691 9 1521 900 138 7 33 chr6 122763414 122763564 -26753473 - B1_Mus1 SINE Alu -1 147 2 9 1521 208 191 24 0 chr6 122763597 122763639 -26753398 + CT-rich Low_complexity Low_complexity 2 44 0 9 1521 279 130 19 0 chr6 122763639 122763693 -26753344 - Lx3C LINE L1 -56 6920 6866 9 1521 435 199 271 26 chr6 122763709 122763864 -26753173 - B3A SINE B2 -5 193 1 9 1521 470 286 131 31 chr6 122763900 122764030 -26753007 - ID_B1 SINE B4 0 224 82 9 1521 435 219 61 20 chr6 122764068 122764166 -26752871 + PB1D9 SINE Alu 1 102 -18 9 1521 305 266 53 0 chr6 122764370 122764464 -26752573 - MIR SINE MIR -43 219 121 9 1521 356 291 0 11 chr6 122764584 122764671 -26752366 + ID_B1 SINE B4 139 224 0 9 1521 664 238 24 77 chr6 122764727 122764936 -26752101 + B3A SINE B2 1 198 0 9 1521 21 0 0 0 chr6 122764984 122765005 -26752032 + AT_rich Low_complexity Low_complexity 1 21 0 9 1521 920 139 249 0 chr6 122765005 122765178 -26751859 - B3 SINE B2 0 216 1 9 1521 557 83 12 0 chr6 122765185 122765269 -26751768 + (GAAAA)n Simple_repeat Simple_repeat 2 86 0 9 1521 418 234 161 15 chr6 122765288 122765418 -26751619 - RSINE1 SINE B4 -15 150 2 9 1521 240 59 0 0 chr6 122765501 122765535 -26751502 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 9 1521 575 283 46 0 chr6 122765626 122765778 -26751259 - RSINE1 SINE B4 -5 160 2 9 1521 219 146 0 0 chr6 122765892 122765933 -26751104 + (TA)n Simple_repeat Simple_repeat 2 42 0 9 1521 313 216 40 30 chr6 122765942 122766042 -26750995 - Lx9 LINE L1 -5 7639 7539 9 1521 252 0 0 0 chr6 122766070 122766098 -26750939 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1521 1120 196 9 9 chr6 122766098 122766320 -26750717 - Lx9 LINE L1 -188 7456 7235 9 1521 844 215 39 5 chr6 122766375 122766581 -26750456 - B3 SINE B2 -3 213 1 9 1521 479 270 107 17 chr6 122767066 122767243 -26749794 - B3A SINE B2 0 198 6 9 1521 540 229 16 39 chr6 122767362 122767489 -26749548 - B1F SINE Alu -25 124 1 9 1521 766 225 22 35 chr6 122767559 122767772 -26749265 + B3A SINE B2 1 195 0 9 1521 295 175 3 93 chr6 122767768 122767857 -26749180 + ID_B1 SINE B4 82 159 -65 9 1521 360 0 0 0 chr6 122767906 122767946 -26749091 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 1521 589 238 71 61 chr6 122767953 122767996 -26749041 - B3 SINE B2 -13 203 166 9 1521 315 0 0 0 chr6 122767996 122768031 -26749006 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1521 589 238 71 61 chr6 122768031 122768184 -26748853 - B3 SINE B2 -51 165 5 9 1521 420 192 39 0 chr6 122768184 122768262 -26748775 + ID_B1 SINE B4 139 219 -5 9 1521 667 318 7 20 chr6 122768251 122768459 -26748578 - ID_B1 SINE B4 -74 218 1 9 1521 295 287 38 38 chr6 122768468 122768573 -26748464 - PB1D10 SINE Alu -6 111 7 9 1521 246 321 100 29 chr6 122769339 122769509 -26747528 - MIRc SINE MIR -3 265 84 9 1521 206 268 0 24 chr6 122769853 122769937 -26747100 + G-rich Low_complexity Low_complexity 2 83 0 9 1521 198 171 0 0 chr6 122770785 122770826 -26746211 + CT-rich Low_complexity Low_complexity 2 42 0 9 1521 979 165 10 83 chr6 122773108 122773313 -26743724 - B2_Mm2 SINE B2 -1 194 5 9 1521 863 131 19 58 chr6 122773534 122773688 -26743349 + B1_Mur4 SINE Alu 1 148 -2 9 1521 547 218 100 50 chr6 122773726 122773866 -26743171 - B1F1 SINE Alu -2 147 1 9 1521 196 277 232 11 chr6 122773873 122773968 -26743069 - MIR SINE MIR -109 153 38 9 1521 180 211 36 55 chr6 122774515 122774570 -26742467 - MIR SINE MIR -99 163 110 9 1521 216 0 0 0 chr6 122774892 122774916 -26742121 + (TG)n Simple_repeat Simple_repeat 2 25 0 9 1521 407 274 0 0 chr6 122775098 122775182 -26741855 + PB1 SINE Alu 19 102 -25 9 1521 414 0 0 0 chr6 122775198 122775244 -26741793 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1521 207 0 0 0 chr6 122775900 122775923 -26741114 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1521 31 0 0 0 chr6 122776253 122776284 -26740753 + GC_rich Low_complexity Low_complexity 1 31 0 9 1521 227 152 0 21 chr6 122776932 122776979 -26740058 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1521 601 210 29 14 chr6 122776988 122777128 -26739909 - B1F1 SINE Alu -5 144 3 9 1521 1168 48 0 39 chr6 122777427 122777580 -26739457 + B1_Mus2 SINE Alu 1 147 0 9 1521 421 203 38 106 chr6 122777674 122777806 -26739231 + MT2B LTR ERVL 142 264 -337 9 1521 960 122 0 21 chr6 122777700 122777843 -26739194 + B1_Mur3 SINE Alu 9 148 -1 9 1521 845 89 24 16 chr6 122777995 122778120 -26738917 + B2_Mm1t SINE B2 59 184 -9 9 1521 1037 31 0 0 chr6 122778704 122778831 -26738206 + B1_Mus2 SINE Alu 21 147 0 9 1521 189 0 0 0 chr6 122779211 122779232 -26737805 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 1521 851 178 14 7 chr6 122779234 122779381 -26737656 + B1_Mur1 SINE Alu 1 148 -1 9 1521 585 255 7 40 chr6 122779449 122779600 -26737437 - ID_B1 SINE B4 -1 223 78 9 1521 317 248 80 74 chr6 122779971 122780140 -26736897 - B4 SINE B4 -17 275 108 9 1521 215 294 21 115 chr6 122780426 122780522 -26736515 - B4A SINE B4 -116 176 90 9 1521 608 286 6 30 chr6 122780609 122780775 -26736262 - RSINE1 SINE B4 -1 164 3 9 1521 604 195 38 61 chr6 122780803 122780934 -26736103 - B1_Mur2 SINE Alu -21 128 1 9 1521 520 284 0 21 chr6 122780936 122781080 -26735957 - B1F2 SINE Alu -8 141 1 9 1521 477 201 52 1 chr6 122781097 122781193 -26735844 - B1_Mur2 SINE Alu -6 143 49 9 1521 594 41 0 0 chr6 122781770 122781843 -26735194 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 9 1521 414 0 0 0 chr6 122781843 122781888 -26735149 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 9 1521 461 189 211 0 chr6 122781888 122781983 -26735054 - B1_Mur1 SINE Alu -22 127 13 9 1521 820 208 0 0 chr6 122781988 122782132 -26734905 + B1_Mur2 SINE Alu 6 149 0 9 1521 265 160 6 41 chr6 122782182 122782239 -26734798 - PB1D7 SINE Alu 0 149 76 9 1521 342 252 33 106 chr6 122782239 122782287 -26734750 - B1_Mur4 SINE Alu -5 145 105 9 1521 180 0 0 0 chr6 122782287 122782307 -26734730 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1521 497 192 20 29 chr6 122782307 122782409 -26734628 - PB1D10 SINE Alu -11 106 6 1 1521 289 229 52 34 chr6 122782737 122782786 -26734251 - ID4_ SINE ID -26 126 1 1 1521 281 167 151 14 chr6 122782786 122782859 -26734178 - ID SINE ID -141 83 1 1 1521 204 40 0 0 chr6 122783929 122783954 -26733083 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1521 645 228 0 0 chr6 122783960 122784083 -26732954 - B1_Mur1 SINE Alu -5 144 22 1 1521 474 65 0 0 chr6 122784157 122784219 -26732818 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1521 189 0 0 0 chr6 122784219 122784240 -26732797 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1521 249 273 72 72 chr6 122784257 122784340 -26732697 - RSINE1 SINE B4 -81 84 2 1 1521 267 226 65 0 chr6 122784494 122784556 -26732481 - ID4 SINE ID -16 67 2 1 1521 623 217 88 102 chr6 122784668 122784679 -26732358 - ID_B1 SINE B4 -1 223 214 1 1521 234 0 0 0 chr6 122784679 122784705 -26732332 + (TTAG)n Simple_repeat Simple_repeat 1 26 0 1 1521 623 217 88 102 chr6 122784705 122784919 -26732118 - ID_B1 SINE B4 -11 213 1 1 1521 713 176 16 0 chr6 122784940 122785065 -26731972 - B1_Mur2 SINE Alu 0 149 23 1 1521 336 261 34 13 chr6 122785462 122785606 -26731431 - MTD LTR MaLR -80 339 196 1 1521 862 173 0 14 chr6 122785600 122785741 -26731296 - B1_Mur4 SINE Alu -1 149 11 1 1521 1019 165 68 64 chr6 122785738 122785958 -26731079 - MTD LTR MaLR -198 221 1 1 1521 207 0 0 0 chr6 122785995 122786018 -26731019 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1521 189 121 0 0 chr6 122786043 122786076 -26730961 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1521 667 299 76 14 chr6 122786097 122786372 -26730665 - B4A SINE B4 0 292 1 1 1521 219 279 0 16 chr6 122786567 122786629 -26730408 + C-rich Low_complexity Low_complexity 3 63 0 1 1521 381 196 16 0 chr6 122786646 122786737 -26730300 - B1_Mus2 SINE Alu 0 120 24 1 1521 221 347 14 0 chr6 122786726 122786798 -26730239 - AluF_3 SINE Alu -102 209 137 1 1521 384 235 50 30 chr6 122787010 122787111 -26729926 + RMER30 DNA MER1_type 1 103 -99 1 1521 931 179 29 6 chr6 122787117 122787291 -26729746 + B2_Mm2 SINE B2 12 189 -6 1 1521 337 203 13 39 chr6 122787346 122787423 -26729614 + RMER30 DNA MER1_type 121 195 -7 1 1521 271 280 0 0 chr6 122787891 122787966 -26729071 + (CAG)n Simple_repeat Simple_repeat 1 75 0 1 1521 346 236 14 0 chr6 122790563 122790635 -26726402 - ID4 SINE ID -7 76 4 1 1521 1023 213 19 28 chr6 122790647 122790860 -26726177 + B3 SINE B2 1 211 -5 1 1521 25 0 0 0 chr6 122790862 122790887 -26726150 + AT_rich Low_complexity Low_complexity 1 25 0 1 1521 248 286 26 0 chr6 122791105 122791182 -26725855 - ID4_ SINE ID -1 82 4 1 1521 1622 223 150 131 chr6 122791507 122791805 -26725232 + Lx6 LINE L1 6808 7164 -296 1 1521 201 74 0 0 chr6 122791805 122791832 -26725205 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1521 1622 223 150 131 chr6 122791832 122792168 -26724869 + Lx6 LINE L1 7165 7453 -7 1 1521 220 172 45 11 chr6 122792238 122792326 -26724711 + (ACTG)n Simple_repeat Simple_repeat 1 91 0 1 1521 335 112 17 121 chr6 122792356 122792656 -26724381 + (ACTG)n Simple_repeat Simple_repeat 1 268 0 1 1521 209 57 29 0 chr6 122793065 122793100 -26723937 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1 1521 217 0 61 0 chr6 122795312 122795345 -26721692 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1521 2130 154 61 13 chr6 122795490 122795865 -26721172 - ORR1B1 LTR MaLR 0 394 2 1 1521 580 237 111 37 chr6 122796009 122796171 -26720866 + Lx7 LINE L1 7147 7320 -376 1 1521 468 0 0 0 chr6 122796229 122796281 -26720756 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1521 408 20 0 0 chr6 122796281 122796329 -26720708 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1521 1150 206 0 23 chr6 122796914 122797133 -26719904 + B3 SINE B2 3 216 0 1 1521 267 230 40 0 chr6 122797641 122797715 -26719322 + L1M1 LINE L1 5785 5861 -439 1 1521 800 284 34 14 chr6 122797775 122797982 -26719055 + ID_B1 SINE B4 1 211 -13 1 1521 270 81 0 0 chr6 122798628 122798665 -26718372 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1521 313 261 0 107 chr6 122798910 122799013 -26718024 + MT2B LTR ERVL 173 264 -337 1 1521 579 120 130 0 chr6 122798941 122799033 -26718004 + B1_Mus2 SINE Alu 41 144 -3 1 1521 720 33 0 0 chr6 122799036 122799127 -26717910 + (CCAA)n Simple_repeat Simple_repeat 2 92 0 1 1521 476 284 104 7 chr6 122799623 122799758 -26717279 - MER5A DNA MER1_type -39 150 3 1 1521 423 256 24 55 chr6 122801633 122801783 -26715254 - ID_B1 SINE B4 -8 216 78 1 1521 288 77 0 0 chr6 122801958 122801997 -26715040 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1521 216 317 33 0 chr6 122801998 122802058 -26714979 - RSINE1 SINE B4 -11 154 93 1 1521 333 291 15 45 chr6 122802172 122802305 -26714732 - L1MB2 LINE L1 -5 6166 6038 1 1521 956 140 7 0 chr6 122802344 122802487 -26714550 - B1_Mus1 SINE Alu 0 148 5 1 1521 315 0 0 0 chr6 122802506 122802541 -26714496 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1521 1469 179 143 12 chr6 122802616 122802984 -26714053 - MTD LTR MaLR -14 405 3 1 1521 767 144 91 0 chr6 122803157 122803289 -26713748 - B1_Mur3 SINE Alu -1 148 5 1 1521 468 254 8 26 chr6 122803911 122804028 -26713009 - PB1D10 SINE Alu 0 117 3 1 1521 758 175 195 43 chr6 122804217 122804402 -26712635 - B3 SINE B2 -3 213 1 1 1521 205 77 77 0 chr6 122804408 122804447 -26712590 + (ATTTG)n Simple_repeat Simple_repeat 3 44 0 1 1521 261 0 0 0 chr6 122805325 122805354 -26711683 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1521 265 220 140 83 chr6 122805450 122805643 -26711394 + RLTR25B LTR ERVK 306 509 -519 1 1521 824 50 0 0 chr6 122805576 122805676 -26711361 + B1_Mus1 SINE Alu 39 138 -10 1 1521 536 0 0 15 chr6 122805676 122805741 -26711296 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 1 1521 452 263 120 0 chr6 122805752 122805885 -26711152 + B1_Mur1 SINE Alu 1 149 0 1 1521 242 296 71 36 chr6 122806291 122806375 -26710662 + PB1D7 SINE Alu 21 107 -13 1 1521 371 234 445 0 chr6 122806398 122806535 -26710502 - B3A SINE B2 0 198 1 1 1521 478 275 25 63 chr6 122806565 122806724 -26710313 - B3 SINE B2 -5 211 59 1 1521 242 255 0 0 chr6 122806755 122806806 -26710231 + PB1 SINE Alu 75 125 -2 1 1521 253 312 13 0 chr6 122806820 122806897 -26710140 + ID4 SINE ID 5 82 -1 1 1521 4056 138 98 18 chr6 122807022 122807702 -26709335 - RMER19A LTR ERVK 0 737 3 1 1521 398 239 53 0 chr6 122808166 122808279 -26708758 + PB1D7 SINE Alu 1 119 -1 1 1521 411 73 0 0 chr6 122808312 122808367 -26708670 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 1521 1559 28 6 0 chr6 122809073 122809251 -26707786 - B2_Mm1t SINE B2 -14 179 1 1 1521 36 40 0 0 chr6 122809251 122809301 -26707736 + AT_rich Low_complexity Low_complexity 1 50 0 1 1521 699 181 214 28 chr6 122809301 122809483 -26707554 - B3 SINE B2 0 216 1 1 1521 648 181 17 8 chr6 122809497 122809614 -26707423 - B1_Mus1 SINE Alu 0 148 31 1 1521 611 279 16 43 chr6 122809639 122809826 -26707211 - B3A SINE B2 -1 197 16 1 1521 214 300 0 0 chr6 122809939 122809999 -26707038 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1521 508 271 113 62 chr6 122810001 122810276 -26706761 - B4A SINE B4 0 292 4 1 1521 1476 229 61 9 chr6 122810291 122810635 -26706402 + ORR1D2 LTR MaLR 8 369 -1 1 1521 627 186 104 17 chr6 122810705 122810856 -26706181 + B3 SINE B2 1 146 -49 1 1521 1210 287 63 15 chr6 122810856 122811252 -26705785 - Lx8 LINE L1 -380 7093 6679 1 1521 1368 250 36 16 chr6 122811252 122811561 -26705476 + Lx8 LINE L1 6338 6652 -821 1 1521 1678 142 27 4 chr6 122811580 122811842 -26705195 + RMER20A LTR ERVK 1 268 -248 1 1521 672 210 123 31 chr6 122811838 122812000 -26705037 - B3 SINE B2 -39 177 1 1 1521 222 287 92 0 chr6 122812136 122812223 -26704814 + PB1D9 SINE Alu 26 120 0 1 1521 1011 228 48 0 chr6 122812521 122812727 -26704310 + B3 SINE B2 1 216 0 1 1521 353 291 161 21 chr6 122812936 122813129 -26703908 - ID_B1 SINE B4 -4 220 1 1 1521 465 19 0 0 chr6 122813810 122813864 -26703173 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1521 207 146 0 0 chr6 122814190 122814231 -26702806 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1521 273 274 47 23 chr6 122814231 122814317 -26702720 - ID_B1 SINE B4 -10 214 127 1 190 848 188 0 51 chr6 122814371 122814528 -26702509 + B1_Mur3 SINE Alu 1 149 0 1 1522 561 55 26 35 chr6 122814536 122814650 -26702387 + (CAAAC)n Simple_repeat Simple_repeat 2 114 0 1 1522 341 282 197 0 chr6 122814662 122814779 -26702258 + ID_B1 SINE B4 80 219 -5 1 1522 245 275 23 81 chr6 122814792 122814879 -26702158 + ID4 SINE ID 2 83 0 1 1522 6597 61 0 20 chr6 122814891 122815755 -26701282 - L1Md_F2 LINE L1 -949 4934 4088 1 1522 7831 47 2 6 chr6 122815751 122816049 -26700988 + L1Md_F2 LINE L1 4927 5225 -658 1 1522 3446 33 2 10 chr6 122816049 122816448 -26700589 + MTA_Mm LTR MaLR 1 396 0 1 1522 7831 41 29 15 chr6 122816448 122817763 -26699274 + L1Md_F2 LINE L1 5226 6556 -26 1 1522 1161 170 24 5 chr6 122817795 122818002 -26699035 + B3 SINE B2 1 211 -5 1 1522 227 314 35 0 chr6 122818334 122818420 -26698617 + LTR33A LTR ERVL 432 520 0 1 1522 245 282 107 0 chr6 122818423 122818526 -26698511 + MIR SINE MIR 145 258 -4 1 1522 1170 51 0 0 chr6 122818730 122818867 -26698170 + B1_Mm SINE Alu 1 137 -10 1 1522 537 16 0 0 chr6 122818867 122818929 -26698108 + (CAAAA)n Simple_repeat Simple_repeat 2 63 0 1 1522 622 148 97 45 chr6 122819085 122819219 -26697818 + B1F1 SINE Alu 1 141 -8 1 1522 824 266 23 9 chr6 122819219 122819439 -26697598 - MTE-int LTR MaLR -589 991 769 1 1522 703 253 0 41 chr6 122819626 122819795 -26697242 + RSINE1 SINE B4 3 164 -1 1 1522 348 214 82 93 chr6 122820602 122820699 -26696338 - RSINE1 SINE B4 -7 158 82 1 1522 284 326 43 19 chr6 122820688 122820834 -26696203 - RSINE1 SINE B4 -142 150 3 1 1522 383 311 19 19 chr6 122821216 122821235 -26695802 + B4 SINE B4 66 172 -119 1 1522 476 193 0 57 chr6 122821235 122821323 -26695714 + B1_Mur3 SINE Alu 1 83 -66 1 1522 840 144 240 6 chr6 122821334 122821509 -26695528 - B3 SINE B2 0 216 1 1 1522 383 265 0 0 chr6 122821899 122821982 -26695055 - PB1D9 SINE Alu -13 107 25 1 1522 326 293 19 57 chr6 122822324 122822429 -26694608 + B3 SINE B2 88 188 -28 1 1522 229 349 0 9 chr6 122822739 122822849 -26694188 - L1M5 LINE L1 -2261 3885 3777 1 1522 871 245 27 41 chr6 122823201 122823422 -26693615 + ID_B1 SINE B4 3 220 -4 1 1522 1667 42 0 0 chr6 122823590 122823782 -26693255 - B2_Mm1a SINE B2 0 193 2 1 1522 556 272 46 82 chr6 122824056 122824252 -26692785 + MER82 DNA MER2_type 306 494 -159 1 1522 285 130 135 68 chr6 122824328 122824402 -26692635 - BC1_Mm scRNA scRNA -58 94 16 1 1522 234 0 0 0 chr6 122825339 122825365 -26691672 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1522 280 294 38 135 chr6 122825433 122825618 -26691419 + MIR SINE MIR 17 183 -85 1 1522 847 227 45 40 chr6 122825634 122825836 -26691201 - B3 SINE B2 -13 203 1 1 1522 249 324 26 123 chr6 122826226 122826381 -26690656 + L2b LINE L2 3236 3375 0 1 1522 389 273 0 22 chr6 122826857 122826947 -26690090 + ID_B1 SINE B4 82 169 -55 1 1522 347 308 28 19 chr6 122826947 122826963 -26690074 + PB1D10 SINE Alu 1 107 -10 1 1522 686 242 106 6 chr6 122826980 122827159 -26689878 + B3A SINE B2 2 198 0 1 1522 237 283 130 0 chr6 122827348 122827440 -26689597 - PB1D9 SINE Alu -15 105 2 1 1522 281 244 13 13 chr6 122827846 122827925 -26689112 + ID4 SINE ID 3 81 -2 1 1522 262 264 71 62 chr6 122828034 122828147 -26688890 - PB1D9 SINE Alu 0 120 7 1 1522 380 365 208 16 chr6 122828181 122828677 -26688360 + L2a LINE L2 2348 2938 -481 1 1522 1219 73 30 0 chr6 122828708 122828873 -26688164 - B2_Mm2 SINE B2 -15 180 11 1 1522 359 293 0 0 chr6 122829023 122829105 -26687932 - Lx8 LINE L1 -789 6684 6603 1 1522 360 0 0 0 chr6 122829168 122829208 -26687829 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1522 378 0 0 0 chr6 122829208 122829249 -26687788 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1522 253 232 35 18 chr6 122829251 122829308 -26687729 - ID2 SINE ID -25 58 1 1 1522 270 359 87 0 chr6 122829420 122829512 -26687525 + L2a LINE L2 3287 3386 -40 1 1522 283 270 101 0 chr6 122829685 122829774 -26687263 - PB1D9 SINE Alu -8 112 15 1 1522 569 135 115 0 chr6 122829913 122830017 -26687020 - B1_Mur4 SINE Alu -34 116 1 1 1522 770 150 8 0 chr6 122830231 122830351 -26686686 + B1_Mus2 SINE Alu 27 147 0 1 1522 429 233 155 0 chr6 122831071 122831200 -26685837 - B1F2 SINE Alu 0 149 1 1 1522 999 176 25 30 chr6 122832415 122832614 -26684423 - B3 SINE B2 0 216 19 1 1522 579 233 25 0 chr6 122832614 122832734 -26684303 - B1_Mur1 SINE Alu -1 148 26 1 1522 233 196 368 0 chr6 122833219 122833376 -26683661 + B3A SINE B2 2 215 -1 1 1522 505 138 276 0 chr6 122833383 122833499 -26683538 + B1_Mus1 SINE Alu 1 148 0 1 1522 234 0 0 0 chr6 122833526 122833552 -26683485 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 1 1522 342 276 122 0 chr6 122833634 122833732 -26683305 - ID_B1 SINE B4 -27 197 88 1 1522 714 189 2 20 chr6 122834364 122834512 -26682525 - B1_Mur2 SINE Alu -2 147 1 1 1522 303 264 0 131 chr6 122834407 122834529 -26682508 - MT2B LTR ERVL -344 257 152 1 1522 576 265 39 50 chr6 122834547 122834726 -26682311 - B3 SINE B2 -5 211 35 1 1522 529 248 48 0 chr6 122834752 122834877 -26682160 - ID_B1 SINE B4 -9 215 85 1 1522 31 26 0 0 chr6 122834895 122834933 -26682104 + AT_rich Low_complexity Low_complexity 1 38 0 1 1522 321 113 0 19 chr6 122834958 122835012 -26682025 - B2_Mm2 SINE B2 -94 101 49 1 1522 1214 103 29 0 chr6 122835025 122835199 -26681838 - B2_Mm1t SINE B2 -13 180 2 1 1522 189 0 0 0 chr6 122835300 122835321 -26681716 + (C)n Simple_repeat Simple_repeat 1 21 0 1 1522 421 159 72 96 chr6 122835364 122835489 -26681548 - B1_Mus1 SINE Alu 0 148 27 1 1522 22 35 0 0 chr6 122835563 122835592 -26681445 + AT_rich Low_complexity Low_complexity 1 29 0 1 1522 319 254 83 25 chr6 122835641 122835762 -26681275 + ID_B1 SINE B4 88 215 -9 1 1522 243 271 104 44 chr6 122835762 122835776 -26681261 + B1F1 SINE Alu 7 149 0 1 1522 256 330 158 29 chr6 122835782 122835991 -26681046 - L1MD2 LINE L1 -55 6304 6069 1 1522 291 114 0 0 chr6 122836019 122836063 -26680974 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1522 1067 108 0 13 chr6 122836064 122836214 -26680823 - B1_Mur4 SINE Alu -2 148 1 1 1522 747 194 39 0 chr6 122836232 122836387 -26680650 - B3A SINE B2 -37 161 1 1 1522 548 299 167 13 chr6 122836409 122836727 -26680310 - L1MD2 LINE L1 -324 6035 5669 1 1522 1095 196 27 0 chr6 122836918 122837138 -26679899 - URR1A DNA MER1_type 0 226 1 1 1522 201 133 0 0 chr6 122839018 122839048 -26677989 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 1 1522 645 258 49 11 chr6 122839304 122839488 -26677549 + ID_B1 SINE B4 13 203 -21 1 1522 257 292 30 30 chr6 122840214 122840281 -26676756 + RSINE1 SINE B4 4 70 -95 1 1522 1202 29 0 0 chr6 122840316 122840453 -26676584 - B1_Mus1 SINE Alu -11 137 1 1 1522 394 229 31 115 chr6 122840562 122840589 -26676448 + L1M2 LINE L1 5473 5500 -791 1 1522 804 202 0 84 chr6 122840589 122840767 -26676270 + RSINE1 SINE B4 3 165 0 1 1522 394 229 31 115 chr6 122840767 122840877 -26676160 + L1M2 LINE L1 5501 5605 -686 1 1522 410 288 175 18 chr6 122840877 122841043 -26675994 + B3A SINE B2 1 192 -6 1 1522 394 229 31 115 chr6 122841043 122841096 -26675941 + L1M2 LINE L1 5606 5648 -643 1 1522 357 24 0 0 chr6 122841179 122841221 -26675816 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1522 401 276 96 16 chr6 122841228 122841353 -26675684 - B3 SINE B2 -79 137 3 1 1522 1994 127 146 18 chr6 122841417 122841753 -26675284 - RLTR14 LTR ERV1 0 382 4 1 1522 432 237 142 56 chr6 122841761 122842029 -26675008 - B4A SINE B4 0 292 2 1 1522 484 265 88 0 chr6 122842092 122842228 -26674809 - B1_Mur2 SINE Alu -1 148 1 1 1522 303 161 0 0 chr6 122842273 122842329 -26674708 + CT-rich Low_complexity Low_complexity 4 59 0 1 1522 225 191 0 0 chr6 122842513 122842560 -26674477 + T-rich Low_complexity Low_complexity 1 47 0 1 1522 560 202 145 0 chr6 122842807 122842931 -26674106 - B1_Mur4 SINE Alu -8 142 1 1 1522 536 143 312 0 chr6 122842943 122843055 -26673982 - B1_Mus2 SINE Alu 0 147 1 1 1522 194 225 0 0 chr6 122843970 122844010 -26673027 - MIRm SINE MIR -122 154 115 1 1522 256 221 14 29 chr6 122844214 122844284 -26672753 + ORR1E LTR MaLR 1 69 -290 1 1522 967 296 147 35 chr6 122844427 122844530 -26672507 - Lx8 LINE L1 -8 7465 7357 1 1522 1635 26 10 10 chr6 122844530 122844722 -26672315 - B2_Mm1a SINE B2 -1 192 1 1 1522 967 296 147 35 chr6 122844722 122844891 -26672146 - Lx8 LINE L1 -117 7356 7183 1 1522 2387 87 16 0 chr6 122844891 122845212 -26671825 + ORR1A2 LTR MaLR 2 327 0 1 1522 967 296 147 35 chr6 122845212 122845488 -26671549 - Lx8 LINE L1 -291 7182 6855 1 1522 852 264 30 34 chr6 122845681 122845947 -26671090 - B4A SINE B4 0 292 28 1 1522 403 266 0 0 chr6 122846051 122846130 -26670907 - ID4_ SINE ID 0 83 5 1 1522 1043 133 200 0 chr6 122846154 122846334 -26670703 - B3 SINE B2 0 216 1 1 1522 545 241 170 6 chr6 122846460 122846631 -26670406 + B3 SINE B2 1 199 -17 1 1522 585 0 0 0 chr6 122846635 122846700 -26670337 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 1 1522 639 281 46 28 chr6 122846747 122846963 -26670074 - ID_B1 SINE B4 0 224 5 1 1522 471 198 40 112 chr6 122847955 122848080 -26668957 + B1_Mur2 SINE Alu 21 136 -13 1 1522 639 0 0 0 chr6 122848080 122848151 -26668886 + (CAACC)n Simple_repeat Simple_repeat 2 72 0 1 1522 5067 233 32 43 chr6 122848314 122850087 -26666950 - Lx5 LINE L1 -23 7027 5327 1 1522 1339 187 0 108 chr6 122850475 122850799 -26666238 - Lx5 LINE L1 -578 5299 5011 1 1522 362 169 78 0 chr6 122850801 122850878 -26666159 - Lx5 LINE L1 -2804 3076 2994 1 1522 9819 113 22 6 chr6 122850876 122852617 -26664420 - Lx2A1 LINE L1 -1 7007 5244 1 1522 1401 196 22 4 chr6 122852617 122852889 -26664148 + MTD LTR MaLR 143 419 0 1 1522 491 319 83 77 chr6 122852909 122853072 -26663965 - L1M2 LINE L1 -3228 2915 2761 1 1522 660 119 0 9 chr6 122853072 122853182 -26663855 - Lx3C LINE L1 -2 6974 6866 1 1522 491 319 83 77 chr6 122853182 122853514 -26663523 - L1M2 LINE L1 -3383 2760 2417 1 1522 281 280 116 56 chr6 122853991 122854294 -26662743 - Lx5 LINE L1 -3488 2392 2072 1 1522 269 243 327 10 chr6 122854497 122854601 -26662436 - B1_Mur2 SINE Alu -12 137 1 1 1522 387 0 0 0 chr6 122854846 122854889 -26662148 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1522 531 290 0 72 chr6 122854907 122855074 -26661963 + B3A SINE B2 30 184 -14 1 1522 405 0 0 0 chr6 122855084 122855129 -26661908 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1522 1005 114 0 0 chr6 122855132 122855281 -26661756 - B2_Mm2 SINE B2 -44 151 3 1 1522 24 53 0 0 chr6 122855290 122855328 -26661709 + AT_rich Low_complexity Low_complexity 1 38 0 1 1522 14563 168 29 75 chr6 122855360 122859383 -26657654 + L1_Mur1 LINE L1 9 4298 -1579 1 1522 729 34 0 0 chr6 122859383 122859471 -26657566 + (TTCC)n Simple_repeat Simple_repeat 3 90 0 1 1522 39892 33 0 0 chr6 122859471 122864882 -26652155 - L1Md_T LINE L1 -2 6580 1170 1 1522 5267 145 86 42 chr6 122864888 122865948 -26651089 - L1Md_T LINE L1 -5411 1205 99 1 1522 3370 0 0 0 chr6 122865983 122866350 -26650687 - L1Md_T LINE L1 0 6582 6216 1 1522 1029 97 176 0 chr6 122866350 122866515 -26650522 - B2_Mm2 SINE B2 0 195 2 1 1522 8103 149 49 57 chr6 122867028 122867565 -26649472 + L1_Mur1 LINE L1 4288 4830 -1047 1 1522 3994 39 19 0 chr6 122867565 122868031 -26649006 + MT2C_Mm LTR ERVL 1 475 0 1 1522 8103 149 49 57 chr6 122868031 122868895 -26648142 + L1_Mur1 LINE L1 4831 5717 -160 1 1522 2678 116 5 17 chr6 122868895 122869309 -26647728 + RLTR9E LTR ERVK 1 409 0 1 1522 8103 149 49 57 chr6 122869309 122869383 -26647654 + L1_Mur1 LINE L1 5718 5788 -89 1 1522 1176 57 0 0 chr6 122869383 122869524 -26647513 + B1_Mus1 SINE Alu 1 141 -7 1 1522 261 0 0 0 chr6 122869524 122869553 -26647484 + (CCAA)n Simple_repeat Simple_repeat 2 30 0 1 1522 8103 149 49 57 chr6 122869553 122869678 -26647359 + L1_Mur1 LINE L1 5789 5876 -1 1 1522 413 302 32 39 chr6 122870344 122870499 -26646538 + RMER5 LTR ERV1 381 534 0 1 1522 225 0 0 0 chr6 122871756 122871781 -26645256 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1522 506 230 6 0 chr6 122872796 122872970 -26644067 + (CA)n Simple_repeat Simple_repeat 1 175 0 1 1522 374 196 9 0 chr6 122872992 122873099 -26643938 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 1522 1212 41 7 0 chr6 122873455 122873600 -26643437 + B1_Mm SINE Alu 2 147 0 1 1522 342 0 0 0 chr6 122873653 122873691 -26643346 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1 1522 387 0 0 0 chr6 122873759 122873802 -26643235 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1522 3149 133 17 17 chr6 122873917 122874400 -26642637 - Lx4A LINE L1 -1 7057 6575 1 1522 592 177 25 42 chr6 122875350 122875468 -26641569 + PB1D9 SINE Alu 2 117 -3 1 1522 718 203 28 7 chr6 122875868 122876012 -26641025 + B1F SINE Alu 2 148 -1 1 1522 535 91 0 0 chr6 122877222 122877299 -26639738 - RLTR9D LTR ERVK 0 403 327 1 1522 284 333 0 0 chr6 122877304 122877388 -26639649 - PB1D10 SINE Alu -31 86 3 1 1522 21 0 0 0 chr6 122877568 122877589 -26639448 + AT_rich Low_complexity Low_complexity 1 21 0 1 1522 275 213 86 77 chr6 122877589 122877706 -26639331 - Lx8 LINE L1 0 7473 7356 1 1522 325 223 114 19 chr6 122877760 122877865 -26639172 + PB1D10 SINE Alu 1 115 -2 1 1522 21 0 0 0 chr6 122878290 122878311 -26638726 + AT_rich Low_complexity Low_complexity 1 21 0 1 1522 253 153 19 9 chr6 122878477 122878526 -26638511 - L1MDa LINE L1 -3168 3369 3323 1 1522 729 256 78 5 chr6 122878526 122878730 -26638307 - ID_B1 SINE B4 -3 221 3 1 1522 225 217 136 61 chr6 122878730 122878827 -26638210 - L1MDa LINE L1 -3215 3322 3212 1 1522 352 266 92 0 chr6 122879015 122879124 -26637913 - L1MDa LINE L1 -5153 1480 1362 1 1522 466 236 43 25 chr6 122879169 122879330 -26637707 - Lx4B LINE L1 -4 7054 6891 1 1522 279 234 46 52 chr6 122879329 122879455 -26637582 - L1MDa LINE L1 -5291 1342 1218 1 1522 4506 173 46 22 chr6 122879455 122880353 -26636684 - Lx9 LINE L1 -1 7643 6725 1 1522 279 234 46 52 chr6 122880353 122880420 -26636617 - L1MDa LINE L1 -5416 1217 1150 1 1522 186 43 0 0 chr6 122880546 122880569 -26636468 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1 1522 1656 31 0 10 chr6 122881397 122881591 -26635446 - B2_Mm1a SINE B2 0 193 2 1 1522 481 312 78 30 chr6 122881813 122882084 -26634953 - Lx8 LINE L1 -1 7472 7189 1 1522 207 0 0 0 chr6 122882086 122882109 -26634928 + (CAAG)n Simple_repeat Simple_repeat 1 23 0 1 1522 315 0 0 0 chr6 122882408 122882443 -26634594 + (TAAG)n Simple_repeat Simple_repeat 4 38 0 1 1522 734 143 0 0 chr6 122882465 122882584 -26634453 - B1_Mus1 SINE Alu -29 119 1 1 1522 258 32 0 0 chr6 122882842 122882873 -26634164 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1522 810 295 58 16 chr6 122883081 122883436 -26633601 + Lx7 LINE L1 7074 7473 0 1 1522 200 143 57 0 chr6 122884083 122884118 -26632919 + C-rich Low_complexity Low_complexity 5 41 0 1 1522 269 309 36 113 chr6 122884118 122884147 -26632890 - B4A SINE B4 -44 248 94 1 1522 798 175 0 14 chr6 122884147 122884286 -26632751 - B1_Mur2 SINE Alu -4 145 9 1 1522 430 318 112 36 chr6 122884582 122884938 -26632099 - L1MA9 LINE L1 -8 6304 5922 1 1522 670 168 75 15 chr6 122885138 122885271 -26631766 - B1_Mus2 SINE Alu -1 146 6 1 1522 230 250 43 14 chr6 122885401 122885470 -26631567 + MLT1H2 LTR MaLR 372 442 -47 1 1522 6316 20 0 37 chr6 122885488 122886245 -26630792 - RLTR13B2 LTR ERVK -20 802 58 1 1522 1499 48 0 0 chr6 122886245 122886431 -26630606 - L1Md_A LINE L1 0 6582 6397 1 1522 6316 20 0 37 chr6 122886431 122886506 -26630531 - RLTR13B2 LTR ERVK -765 57 1 1 1522 302 241 89 62 chr6 122888245 122888391 -26628646 - L1MEg LINE L1 -5232 852 703 1 1522 1103 107 0 29 chr6 122888427 122888601 -26628436 + B2_Mm2 SINE B2 2 170 -25 1 1522 357 24 0 0 chr6 122888686 122888728 -26628309 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1522 1071 243 11 128 chr6 122889950 122890332 -26626705 + Lx8 LINE L1 4422 4758 -1122 1 1522 1087 234 52 79 chr6 122890397 122890778 -26626259 - RMER20B LTR ERVK -19 608 238 1 1522 4763 223 43 11 chr6 122890997 122891525 -26625512 - MERVK26-int LTR ERVK -28 6891 6363 1 1522 1224 148 202 51 chr6 122891525 122891881 -26625156 + RMER17C LTR ERVK 1 410 0 1 1522 4763 223 43 11 chr6 122891881 122892366 -26624671 - MERVK26-int LTR ERVK -557 6362 5845 1 1522 480 145 13 0 chr6 122892370 122892446 -26624591 - MurERV4-int LTR ERVK -3925 1335 1259 1 1522 1129 58 7 0 chr6 122892456 122892593 -26624444 - B1_Mus2 SINE Alu -9 138 1 1 1522 6545 202 47 8 chr6 122892595 122893884 -26623153 - MERVK26-int LTR ERVK -2146 4773 3435 1 1522 3443 58 16 2 chr6 122893885 122894315 -26622722 + L1_Mus1 LINE L1 6061 6496 -71 1 1522 7418 77 23 1 chr6 122894311 122895597 -26621440 + L1_Mus2 LINE L1 5251 6565 -1 1 1522 791 239 0 58 chr6 122895607 122895798 -26621239 - MERVK26-int LTR ERVK -5137 1782 1603 1 1522 530 250 74 95 chr6 122895799 122896095 -26620942 - RMER20B LTR ERVK -104 523 234 1 1522 2329 239 166 17 chr6 122896342 122896811 -26620226 + Lx8 LINE L1 4870 5440 -440 1 1522 641 66 11 0 chr6 122896811 122896902 -26620135 + (CAAAA)n Simple_repeat Simple_repeat 2 93 0 1 1522 2329 268 129 29 chr6 122896902 122897619 -26619418 + Lx8 LINE L1 5441 6173 -1300 1 1522 462 79 0 0 chr6 122897619 122897682 -26619355 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1522 1646 305 79 45 chr6 122897682 122897851 -26619186 + Lx8 LINE L1 6174 6376 -1097 1 1522 1275 89 0 0 chr6 122898043 122898222 -26618815 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 1 1522 276 186 0 0 chr6 122898231 122898290 -26618747 + CT-rich Low_complexity Low_complexity 2 60 0 1 1522 1110 89 0 20 chr6 122898290 122898439 -26618598 - B1_Mus2 SINE Alu 0 147 2 1 1522 694 253 42 2 chr6 122898475 122898724 -26618313 - L1MA4 LINE L1 -228 5955 5700 1 1522 2733 280 98 8 chr6 122898667 122899549 -26617488 + Lx8 LINE L1 6300 7260 -213 1 1522 446 284 16 47 chr6 122899571 122899700 -26617337 - RSINE1 SINE B4 -39 126 2 1 1522 381 169 67 0 chr6 122899725 122899814 -26617223 - L1MA4 LINE L1 -1093 5050 4956 1 1522 916 324 85 11 chr6 122900141 122900371 -26616666 - L1MA5 LINE L1 -403 5897 5686 1 1522 549 0 0 0 chr6 122900371 122900432 -26616605 + (GTGTG)n Simple_repeat Simple_repeat 5 65 0 1 1522 916 324 87 8 chr6 122900432 122900748 -26616289 - L1MA5 LINE L1 -615 5685 5337 1 1522 239 179 75 0 chr6 122900769 122900836 -26616201 - L1MA5 LINE L1 -905 5238 5167 1 1522 192 77 0 0 chr6 122901083 122901109 -26615928 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1 1522 233 302 0 0 chr6 122901109 122901162 -26615875 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1522 434 299 39 0 chr6 122901162 122901289 -26615748 - RSINE1 SINE B4 0 165 34 1 1522 590 246 8 0 chr6 122903585 122903711 -26613326 + B1F SINE Alu 16 142 -7 1 1522 209 33 0 32 chr6 122904578 122904609 -26612428 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1 1522 2471 52 3 3 chr6 122904810 122905120 -26611917 - L1_Mus2 LINE L1 -40 6526 6217 1 1522 1159 71 40 40 chr6 122905120 122905297 -26611740 + L1_Mus2 LINE L1 6044 6220 -346 1 1522 57523 7 12 0 chr6 122905890 122912119 -26604918 - IAPEz-int LTR ERVK -174 6307 1 1 1522 1970 95 3 69 chr6 122912120 122912469 -26604568 - IAPLTR1a_Mm LTR ERVK -11 326 1 1 1522 327 155 0 35 chr6 122913929 122914016 -26603021 + (CCAA)n Simple_repeat Simple_repeat 1 84 0 1 1522 725 220 5 60 chr6 122914693 122914877 -26602160 - B3A SINE B2 0 198 25 1 1522 897 285 89 52 chr6 122915223 122915704 -26601333 - L1M2 LINE L1 -1065 5078 4580 1 1522 531 284 94 54 chr6 122916006 122916378 -26600659 - L1MDa LINE L1 -5418 1215 829 1 1522 408 155 0 0 chr6 122917751 122917822 -26599215 + (TTA)n Simple_repeat Simple_repeat 3 73 0 1 1522 192 135 54 0 chr6 122917822 122917859 -26599178 - MIR SINE MIR -105 157 119 1 1522 482 250 59 50 chr6 122917974 122918176 -26598861 - B3 SINE B2 0 216 13 1 1522 216 237 24 73 chr6 122918104 122918186 -26598851 - B4 SINE B4 -212 80 3 1 1522 1334 66 39 6 chr6 122918540 122918722 -26598315 + B2_Mm1a SINE B2 1 188 -5 1 1522 3778 2 0 0 chr6 122918727 122919138 -26597899 + L1Md_A LINE L1 6171 6581 -1 1 1522 207 0 0 0 chr6 122919817 122919840 -26597197 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1522 337 311 137 18 chr6 122919847 122919979 -26597058 - L1MA9 LINE L1 -8 6304 6165 1 1522 306 0 0 0 chr6 122919979 122920013 -26597024 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1522 337 311 137 18 chr6 122920013 122920158 -26596879 - L1MA9 LINE L1 -148 6164 5995 1 1522 259 286 121 45 chr6 122921081 122921213 -26595824 - MER77 LTR ERVL -229 378 237 1 1522 4488 147 44 8 chr6 122922152 122922905 -26594132 + Lx4A LINE L1 5797 6576 -482 1 1522 2135 187 13 5 chr6 122923112 122923499 -26593538 - ORR1B1 LTR MaLR 0 394 5 1 1522 1372 178 59 10 chr6 122923501 122923790 -26593247 - ORR1B1-int LTR MaLR -1 1508 1206 1 1522 2874 126 11 9 chr6 122923790 122924248 -26592789 + L1_Mur2 LINE L1 4283 4741 -1136 1 1522 3355 84 9 0 chr6 122924242 122924696 -26592341 - MusHAL1 LINE L1 -1353 1359 902 1 1522 34523 91 5 9 chr6 122924692 122930271 -26586766 + L1Md_F LINE L1 3 5587 -296 1 1522 7924 49 21 0 chr6 122930271 122931234 -26585803 + L1Md_F2 LINE L1 5588 6570 -12 1 1522 34523 80 1 4 chr6 122931234 122931501 -26585536 + L1Md_F LINE L1 5588 5836 -47 1 1522 2885 137 10 14 chr6 122931504 122931992 -26585045 + Lx2A LINE L1 6522 7007 -1 1 1522 217 301 37 55 chr6 122932037 122932146 -26584891 + PB1D10 SINE Alu 11 117 0 1 1522 465 272 18 0 chr6 122932161 122932275 -26584762 + PB1D10 SINE Alu 1 116 -1 1 1522 1394 73 5 68 chr6 122932568 122932773 -26584264 - B2_Mm1a SINE B2 0 193 2 1 1522 11111 51 4 1 chr6 122932790 122934855 -26582182 - L1Md_F3 LINE L1 -14 6570 4500 1 1522 2283 133 50 79 chr6 122935170 122935650 -26581387 + RMER4A LTR ERVK 1 466 0 1 1522 283 91 0 206 chr6 122935786 122935883 -26581154 - RMER4A LTR ERVK -4 462 386 1 1522 657 0 0 0 chr6 122935884 122935957 -26581080 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1522 1292 170 80 60 chr6 122935993 122936294 -26580743 + RMER6D LTR ERVK 24 330 -390 1 1522 5024 185 28 12 chr6 122936307 122937253 -26579784 - MurERV4-int LTR ERVK -4298 962 2 1 1522 2068 166 51 42 chr6 122937282 122937734 -26579303 - RMER4A LTR ERVK -10 456 1 1 1522 234 314 50 17 chr6 122938338 122938458 -26578579 + L1MC4 LINE L1 6505 6628 -1414 1 1522 2386 177 63 63 chr6 122938980 122939878 -26577159 - RLTR13D1 LTR ERVK 0 855 1 1 1522 618 204 0 0 chr6 122941272 122941385 -26575652 + B1F2 SINE Alu 26 138 -11 1 1522 477 0 0 0 chr6 122941398 122941451 -26575586 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1522 726 96 0 0 chr6 122941482 122941586 -26575451 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 1522 263 383 9 9 chr6 122942486 122942602 -26574435 + PB1D10 SINE Alu 1 116 -1 1 1522 1424 65 5 29 chr6 122942671 122942876 -26574161 - L1Md_F2 LINE L1 0 6582 6383 1 1522 30114 60 4 34 chr6 122942889 122944780 -26572257 - L1Md_F2 LINE L1 -3 6579 5009 1 190 8415 36 0 0 chr6 122944780 122945776 -26571261 + L1Md_T LINE L1 5587 6582 0 1 1523 30114 75 5 67 chr6 122945776 122949460 -26567577 - L1Md_F2 LINE L1 -875 5008 1308 1 1523 7562 101 20 2 chr6 122949463 122950750 -26566287 - L1Md_F2 LINE L1 -5411 1205 98 1 1523 22 80 0 0 chr6 122950750 122950800 -26566237 + AT_rich Low_complexity Low_complexity 1 50 0 1 1523 454 147 0 0 chr6 122950806 122950881 -26566156 + BGLII_Mus LTR ERVK 1 75 -347 1 1523 557 328 161 20 chr6 122951086 122951434 -26565603 - MLT1H LTR MaLR -2 547 151 1 1523 274 203 61 30 chr6 122951481 122951547 -26565490 - MLT1H LTR MaLR -468 81 14 1 1523 3802 68 78 71 chr6 122951928 122952274 -26564763 - L1Md_F3 LINE L1 0 6566 6163 1 1523 1030 73 7 0 chr6 122952274 122952410 -26564627 + RLTR45 LTR ERVK 1 137 -345 1 1523 3802 68 78 71 chr6 122952410 122952941 -26564096 - L1Md_F3 LINE L1 0 6162 5541 1 1523 1530 248 62 33 chr6 122954252 122954478 -26562559 - Lx6 LINE L1 -52 7408 7180 1 1523 6660 75 27 2 chr6 122954478 122955358 -26561679 - RLTR13D6 LTR ERVK 0 902 1 1 1523 1594 246 144 10 chr6 122955358 122956287 -26560750 - Lx6 LINE L1 -281 7179 5896 1 1523 6798 231 114 22 chr6 122956291 122958802 -26558235 - Lx6 LINE L1 -1294 5756 3000 1 1523 366 23 0 0 chr6 122958811 122958854 -26558183 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1523 1486 202 76 18 chr6 122958865 122959248 -26557789 - Lx6 LINE L1 -3816 2064 1660 1 1523 329 227 80 18 chr6 122959426 122959538 -26557499 - Lx5 LINE L1 -2 7048 6930 1 1523 1469 221 20 16 chr6 122959540 122959614 -26557423 - Lx6 LINE L1 -4225 1652 1579 1 1523 2131 88 7 3 chr6 122959614 122959910 -26557127 + L1_Mus3 LINE L1 6342 6638 0 1 1523 1469 209 39 16 chr6 122959910 122960636 -26556401 - Lx6 LINE L1 -4299 1578 892 1 1523 390 74 0 0 chr6 122961284 122961338 -26555699 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1523 373 307 148 8 chr6 122961574 122961830 -26555207 - L1MC3 LINE L1 -241 7544 7253 1 1523 448 225 35 7 chr6 122961836 122961979 -26555058 - Lx6 LINE L1 -7 7453 7307 1 1523 399 277 36 0 chr6 122961973 122962085 -26554952 + Lx6 LINE L1 7185 7300 -160 1 1523 286 277 20 10 chr6 122962096 122962198 -26554839 - Lx9 LINE L1 -226 7418 7316 1 1523 216 182 0 0 chr6 122962363 122962407 -26554630 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1 1523 350 311 126 0 chr6 122962408 122962646 -26554391 - L1MDa LINE L1 -5523 1110 843 1 1523 42 20 0 0 chr6 122963553 122963602 -26553435 + AT_rich Low_complexity Low_complexity 1 49 0 1 1523 2740 45 27 0 chr6 122963952 122964289 -26552748 - ORR1A1 LTR MaLR 0 346 1 1 1523 26 30 0 0 chr6 122964491 122964524 -26552513 + AT_rich Low_complexity Low_complexity 1 33 0 1 1523 243 88 0 0 chr6 122964829 122964863 -26552174 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1 1523 8548 135 30 8 chr6 122964867 122967397 -26549640 - Lx2A1 LINE L1 0 7008 4427 1 1523 35120 54 3 1 chr6 122967397 122973317 -26543720 - L1Md_F3 LINE L1 -14 6570 636 1 1523 2834 147 35 0 chr6 122973347 122973857 -26543180 - Lx2A1 LINE L1 -1491 4386 3859 1 1523 576 102 0 0 chr6 122974542 122974640 -26542397 + (GA)n Simple_repeat Simple_repeat 1 98 0 1 1523 288 77 0 0 chr6 122975760 122975799 -26541238 + (CAT)n Simple_repeat Simple_repeat 3 41 0 1 1523 5225 157 11 33 chr6 122975799 122976696 -26540341 - Lx4A LINE L1 -7 7051 6175 1 1523 384 140 505 0 chr6 122976696 122976801 -26540236 + Lx4A LINE L1 6291 6448 -610 1 1523 619 283 85 14 chr6 122977965 122978259 -26538778 - RLTR12B LTR ERVK 0 528 214 1 1523 1716 142 49 71 chr6 122978262 122978588 -26538449 - ORR1A4 LTR MaLR -8 321 3 1 1523 635 221 125 10 chr6 122978588 122978777 -26538260 - RLTR12B LTR ERVK -307 221 11 1 1523 658 291 93 29 chr6 122978779 122979090 -26537947 + Lx8 LINE L1 6927 7257 -216 1 1523 31135 78 2 4 chr6 122979160 122984464 -26532573 + L1Md_F2 LINE L1 203 5590 -296 1 1523 7798 58 1 1 chr6 122984465 122985445 -26531592 + L1Md_F2 LINE L1 5592 6571 -14 1 1523 451 228 130 19 chr6 122985562 122985723 -26531314 + L1_Mur3 LINE L1 3691 3869 -2011 1 1523 1005 241 14 0 chr6 122985760 122985967 -26531070 + B3 SINE B2 1 210 -6 1 1523 36466 43 0 3 chr6 122986125 122992632 -26524405 - L1Md_T LINE L1 0 6585 1 1 1523 241 167 24 0 chr6 122992634 122992676 -26524361 + MTE2b LTR MaLR 334 376 -3 1 1523 2112 64 11 0 chr6 122992838 122993102 -26523935 - L1_Mus1 LINE L1 -6 6561 6295 1 1523 965 108 0 21 chr6 122993115 122993257 -26523780 - B1_Mus1 SINE Alu -5 143 5 1 1523 593 236 18 30 chr6 122993265 122993431 -26523606 - L1_Mur3 LINE L1 -1990 3890 3727 1 1523 513 86 32 0 chr6 122993500 122993593 -26523444 + (GA)n Simple_repeat Simple_repeat 2 97 0 1 1523 267 268 36 14 chr6 122993593 122993733 -26523304 - L1MD LINE L1 -2388 3758 3616 1 1523 315 0 0 0 chr6 122993733 122993768 -26523269 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1 1523 4837 161 20 12 chr6 122993803 122993908 -26523129 - Lx LINE L1 -3 6651 6540 1 1523 3130 56 10 0 chr6 122993908 122994300 -26522737 + MTA_Mm LTR MaLR 1 396 0 1 1523 4837 161 20 12 chr6 122994300 122995040 -26521997 - Lx LINE L1 -115 6539 5799 1 1523 12152 116 29 12 chr6 122995107 122997803 -26519234 + L1VL1 LINE L1 227 2974 -724 1 1523 803 156 23 6 chr6 122997803 122997924 -26519113 + polypyrimidine Low_complexity Low_complexity 55 178 0 1 1523 1336 50 0 16 chr6 122997924 122998107 -26518930 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1523 803 156 23 6 chr6 122998107 122998159 -26518878 + polypyrimidine Low_complexity Low_complexity 2 54 0 1 1523 666 277 187 18 chr6 122998184 122998467 -26518570 + MTC LTR MaLR 39 369 -52 1 1523 189 0 0 0 chr6 122998473 122998494 -26518543 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 1 1523 6682 115 30 3 chr6 122998517 122999783 -26517254 + Lx LINE L1 5354 6654 0 1 1523 533 259 0 26 chr6 123000809 123000960 -26516077 - B1_Mus1 SINE Alu -1 147 1 1 1523 1031 92 11 23 chr6 123001874 123002051 -26514986 + (TTCTCC)n Simple_repeat Simple_repeat 5 179 0 2 1523 8723 130 12 5 chr6 123002051 123003745 -26513292 - Lx2A1 LINE L1 -16 6992 5283 3 1523 706 269 48 24 chr6 123004291 123004519 -26512518 - MTE2a LTR MaLR -14 405 193 4 1523 1720 175 15 54 chr6 123004526 123004685 -26512352 - Lx2A1 LINE L1 -583 5303 5166 3 1523 2155 61 0 7 chr6 123004685 123004966 -26512071 - L1Md_F2 LINE L1 -1 6581 6303 5 1523 1720 175 15 54 chr6 123004966 123005216 -26511821 - Lx2A1 LINE L1 -721 5165 4910 3 1523 1894 152 45 17 chr6 123005217 123005407 -26511630 - Lx2A1 LINE L1 -1486 4391 4201 3 1523 2665 104 39 3 chr6 123005407 123005793 -26511244 + MTB LTR MaLR 1 400 0 6 1523 1894 152 45 17 chr6 123005793 123006004 -26511033 - Lx2A1 LINE L1 -1677 4200 3979 3 1523 6374 172 47 18 chr6 123006001 123007975 -26509062 - L1VL2 LINE L1 -1396 2219 210 7 1523 27680 78 5 90 chr6 123007989 123012099 -26504938 - L1Md_F2 LINE L1 -2 6580 2471 8 1523 1973 87 4 4 chr6 123012099 123012377 -26504660 - L1Md_F2 LINE L1 -2 6580 6303 9 1523 27680 83 6 80 chr6 123012377 123015045 -26501992 - L1Md_F2 LINE L1 -3413 2470 380 8 1523 225 246 14 84 chr6 123015717 123015788 -26501249 + B4A SINE B4 2 67 -225 1 1523 185 159 23 0 chr6 123016130 123016174 -26500863 + GA-rich Low_complexity Low_complexity 5 49 0 1 1523 208 279 44 0 chr6 123016186 123016254 -26500783 + GA-rich Low_complexity Low_complexity 4 74 0 1 1523 245 161 31 31 chr6 123016290 123016354 -26500683 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1523 438 204 44 22 chr6 123016354 123016489 -26500548 - L1_Mur2 LINE L1 -5950 762 625 1 1523 335 258 10 10 chr6 123016911 123017009 -26500028 + Lx6 LINE L1 7203 7300 -160 1 1523 303 238 47 9 chr6 123017015 123017121 -26499916 - Lx9 LINE L1 -219 7425 7316 1 1523 23 33 0 0 chr6 123017194 123017224 -26499813 + AT_rich Low_complexity Low_complexity 1 30 0 1 1523 440 108 14 0 chr6 123017676 123017693 -26499344 + (TTCC)n Simple_repeat Simple_repeat 2 19 0 1 1523 1099 112 6 6 chr6 123017693 123017873 -26499164 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1523 440 108 14 0 chr6 123017873 123017929 -26499108 + (TTCC)n Simple_repeat Simple_repeat 2 57 0 1 1523 317 275 95 34 chr6 123017930 123018077 -26498960 - L1MDa LINE L1 -5156 1477 1322 2 1523 185 191 85 0 chr6 123019050 123019097 -26497940 + L2c LINE L2 3287 3337 -50 2 1523 1089 96 0 0 chr6 123019321 123019477 -26497560 + (TTTC)n Simple_repeat Simple_repeat 3 158 0 2 1523 1113 52 15 0 chr6 123019478 123019613 -26497424 - B1_Mus2 SINE Alu -10 137 1 2 1523 246 286 29 0 chr6 123019919 123019989 -26497048 - MIR SINE MIR -70 192 121 2 1523 421 323 9 101 chr6 123020102 123020319 -26496718 - B3A SINE B2 0 198 2 2 1523 1582 197 91 19 chr6 123020499 123020929 -26496108 - RMER6B LTR ERVK 0 461 1 2 1523 20452 43 86 1 chr6 123021745 123025345 -26491692 - L1Md_T LINE L1 0 6582 2643 2 1523 189 74 0 0 chr6 123025345 123025372 -26491665 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1523 1707 126 34 0 chr6 123025372 123025665 -26491372 + MusHAL1 LINE L1 1142 1444 -1268 2 1523 2954 95 2 19 chr6 123025666 123026094 -26490943 + L1_Mus1 LINE L1 6147 6567 0 3 1523 1305 190 38 15 chr6 123026101 123026368 -26490669 - RLTR30 LTR ERV1 -6 373 101 3 1523 8079 120 1 5 chr6 123026375 123028326 -26488711 + L1_Mus2 LINE L1 4573 6513 -53 3 1523 360 0 0 0 chr6 123028326 123028366 -26488671 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1523 31031 72 1 5 chr6 123029267 123034462 -26482575 + L1Md_F2 LINE L1 316 5589 -297 3 1523 7636 60 17 0 chr6 123034462 123035439 -26481598 + L1Md_F2 LINE L1 5590 6583 -2 3 1523 1016 109 0 0 chr6 123035990 123036137 -26480900 - B1_Mm SINE Alu 0 147 1 3 1523 34223 70 3 1 chr6 123036768 123042939 -26474098 - L1Md_F2 LINE L1 0 6582 404 3 1523 753 239 60 63 chr6 123044244 123044512 -26472525 + RMER10A LTR ERVL 7 273 -169 3 1523 843 39 0 0 chr6 123044609 123044712 -26472325 + (TTTTC)n Simple_repeat Simple_repeat 2 104 0 3 1523 444 88 0 8 chr6 123044712 123044780 -26472257 - B1_Mm SINE Alu -9 138 47 3 1523 588 320 5 32 chr6 123044842 123045029 -26472008 - B4 SINE B4 -87 205 24 4 1523 387 0 0 0 chr6 123045759 123045802 -26471235 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1523 213 210 0 0 chr6 123046125 123046187 -26470850 + T-rich Low_complexity Low_complexity 1 62 0 4 1523 465 62 0 0 chr6 123046194 123046259 -26470778 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1523 381 257 9 52 chr6 123046267 123046382 -26470655 - B1_Mur4 SINE Alu -40 110 1 4 1523 23 0 0 0 chr6 123047110 123047133 -26469904 + AT_rich Low_complexity Low_complexity 1 23 0 4 1523 181 71 0 87 chr6 123047530 123047576 -26469461 + T-rich Low_complexity Low_complexity 1 42 0 4 1523 1151 69 0 27 chr6 123047576 123047725 -26469312 - B1_Mm SINE Alu -2 145 1 4 1523 1383 173 3 74 chr6 123048078 123048415 -26468622 - MYSERV6-int LTR ERVK -2 8957 8645 4 1523 1679 180 103 229 chr6 123048415 123049114 -26467923 - RMER19C LTR ERVK 0 611 1 4 1523 792 122 5 70 chr6 123049123 123049308 -26467729 - MurERV4_19-int LTR ERVK -7 5773 5601 4 1523 1389 194 25 21 chr6 123049350 123049634 -26467403 + RMER19C LTR ERVK 327 611 0 5 1523 3839 215 27 23 chr6 123049634 123050609 -26466428 - MYSERV-int LTR ERVK -329 6221 5243 5 1523 646 237 83 0 chr6 123050634 123050790 -26466247 - MYSERV-int LTR ERVK -1525 5025 4857 5 1523 285 182 0 105 chr6 123050919 123051005 -26466032 - MYSERV-int LTR ERVK -1810 4740 4664 5 1523 5358 223 38 19 chr6 123051075 123052468 -26464569 - MYSERV6-int LTR ERVK -7372 1587 169 5 1523 7692 153 10 29 chr6 123052647 123053313 -26463724 - Lx2B LINE L1 -4 6996 6335 5 1523 806 113 81 0 chr6 123053313 123053437 -26463600 + B1_Mus2 SINE Alu 4 137 -10 5 1523 16589 153 19 17 chr6 123053437 123054482 -26462555 - Lx2B LINE L1 -666 6334 5293 5 1523 1282 198 47 0 chr6 123054482 123054739 -26462298 - Lx LINE L1 0 6654 6386 5 1523 18657 143 23 8 chr6 123054739 123059489 -26457548 - Lx2B LINE L1 -591 5292 464 5 1523 387 0 0 0 chr6 123059598 123059641 -26457396 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1523 7697 145 67 6 chr6 123059666 123059805 -26457232 - MusHAL1 LINE L1 -281 2431 2279 5 1523 234 0 0 0 chr6 123059805 123059831 -26457206 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1523 7697 145 67 6 chr6 123059831 123060485 -26456552 - MusHAL1 LINE L1 -434 2278 1597 5 1523 678 58 0 0 chr6 123060485 123060572 -26456465 + (TCTCC)n Simple_repeat Simple_repeat 5 91 0 5 1523 7697 145 67 6 chr6 123060572 123061284 -26455753 - MusHAL1 LINE L1 -1116 1596 836 5 1523 738 0 0 0 chr6 123061284 123061366 -26455671 + (TTC)n Simple_repeat Simple_repeat 2 83 0 6 1523 7697 145 67 6 chr6 123061366 123061422 -26455615 - MusHAL1 LINE L1 -1877 835 777 5 1523 4923 61 13 18 chr6 123061428 123062143 -26454894 + MusHAL1 LINE L1 1944 2654 -58 6 1523 254 291 9 72 chr6 123062233 123062344 -26454693 + Lx9 LINE L1 7315 7418 -226 6 1523 25 51 0 0 chr6 123062752 123062791 -26454246 + AT_rich Low_complexity Low_complexity 1 39 0 6 1523 2473 82 9 0 chr6 123062792 123063123 -26453914 - L1_Mus1 LINE L1 -2 6565 6232 6 1523 1696 84 0 0 chr6 123063123 123063350 -26453687 + L1_Mus1 LINE L1 6049 6275 -292 6 1523 7386 70 2 0 chr6 123063350 123064545 -26452492 - L1_Mus1 LINE L1 0 6567 5370 6 1523 4151 157 16 13 chr6 123066081 123066849 -26450188 + Lx4A LINE L1 5815 6584 -474 6 1523 2939 75 8 2 chr6 123067264 123067665 -26449372 - L1Md_F2 LINE L1 0 6582 6180 6 1523 557 202 0 99 chr6 123067811 123067932 -26449105 - RMER4A LTR ERVK -11 455 347 6 1523 1198 207 71 35 chr6 123067925 123068301 -26448736 + RMER6C LTR ERVK 295 720 0 6 1523 1602 175 36 26 chr6 123068303 123068490 -26448547 - RMER4A LTR ERVK -158 308 123 6 1523 4026 152 32 1 chr6 123068490 123069035 -26448002 + RLTR19B LTR ERVK 1 546 -169 7 1523 201 74 0 0 chr6 123069035 123069062 -26447975 + (TA)n Simple_repeat Simple_repeat 2 28 0 7 1523 4026 152 32 1 chr6 123069062 123069210 -26447827 + RLTR19B LTR ERVK 547 714 -1 7 1523 1602 175 36 26 chr6 123069210 123069327 -26447710 - RMER4A LTR ERVK -344 122 1 6 1523 867 128 317 5 chr6 123069327 123069538 -26447499 - MurERV4-int LTR ERVK 0 5260 4984 6 1523 243 188 0 0 chr6 123069540 123069588 -26447449 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1523 6691 252 41 52 chr6 123069668 123070016 -26447021 - MurERV4-int LTR ERVK -1564 1613 1263 6 1523 1103 52 0 7 chr6 123070016 123070153 -26446884 - B1_Mus2 SINE Alu -9 138 3 7 1523 6691 189 29 25 chr6 123070153 123070268 -26446769 - MurERV4-int LTR ERVK -3998 1262 1160 6 1523 483 18 0 0 chr6 123070268 123070324 -26446713 + (CAA)n Simple_repeat Simple_repeat 3 58 0 7 1523 6691 189 29 25 chr6 123070324 123071449 -26445588 - MurERV4-int LTR ERVK -4101 1159 1 6 1523 2123 201 24 29 chr6 123071451 123071907 -26445130 - RMER4A LTR ERVK -12 454 1 6 1523 233 289 13 0 chr6 123072474 123072550 -26444487 + L1MC4 LINE L1 6552 6628 -1414 7 1523 615 248 0 8 chr6 123074452 123074574 -26442463 + B1F2 SINE Alu 16 136 -13 7 1523 379 76 29 29 chr6 123074595 123074663 -26442374 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 7 1523 264 250 0 0 chr6 123074731 123074791 -26442246 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1523 336 374 9 9 chr6 123075778 123075894 -26441143 + PB1D10 SINE Alu 1 116 -1 7 1523 451 312 44 38 chr6 123076132 123076292 -26440745 - MLT1H LTR MaLR -4 545 385 8 1523 360 296 201 111 chr6 123076313 123076602 -26440435 - MLT1H LTR MaLR -217 332 18 8 1524 867 280 8 26 chr6 123078123 123078365 -26438672 - Lx6 LINE L1 -60 7400 7163 8 1524 3801 70 38 4 chr6 123078365 123078867 -26438170 - MURVY-LTR LTR ERV1 0 519 1 8 1524 867 280 8 26 chr6 123078867 123078892 -26438145 - Lx6 LINE L1 -298 7162 7138 8 1524 2339 209 14 18 chr6 123078903 123079528 -26437509 - L1_Mur3 LINE L1 -2445 3435 2813 8 1524 608 72 0 24 chr6 123079608 123079693 -26437344 - B2_Mm2 SINE B2 -110 85 3 8 1524 21 57 0 0 chr6 123079761 123079796 -26437241 + AT_rich Low_complexity Low_complexity 1 35 0 8 1524 216 0 0 0 chr6 123080104 123080128 -26436909 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 8 1524 9775 50 5 1 chr6 123080130 123082079 -26434958 - L1Md_F2 LINE L1 -24 6558 4601 8 1524 35115 75 15 12 chr6 123082089 123088451 -26428586 - L1Md_A LINE L1 0 6585 220 8 1524 838 92 0 15 chr6 123088598 123088730 -26428307 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 8 1524 26 0 0 0 chr6 123088902 123088928 -26428109 + AT_rich Low_complexity Low_complexity 1 26 0 9 1524 833 101 16 0 chr6 123090371 123090500 -26426537 + (TTTC)n Simple_repeat Simple_repeat 2 132 0 9 1524 757 62 0 0 chr6 123090500 123090596 -26426441 - B1_Mus2 SINE Alu -10 137 42 9 1524 249 200 0 18 chr6 123090548 123090604 -26426433 - 4.5SRNA scRNA scRNA -8 86 32 9 1524 271 308 57 71 chr6 123090883 123091023 -26426014 - MIR SINE MIR -43 219 82 9 1524 438 328 53 39 chr6 123091094 123091300 -26425737 - B3 SINE B2 -6 210 2 9 1524 1768 184 108 7 chr6 123091484 123091900 -26425137 - RMER6B LTR ERVK -3 458 1 9 1524 638 25 12 0 chr6 123093023 123093103 -26423934 + (GA)n Simple_repeat Simple_repeat 2 82 0 9 1524 2099 191 16 3 chr6 123094381 123094760 -26422277 - Lx4A LINE L1 -12 7046 6663 9 1524 247 125 0 0 chr6 123094760 123094800 -26422237 - Lx4A LINE L1 -545 6513 6474 9 1524 1663 209 136 55 chr6 123094833 123095320 -26421717 - RLTR12B LTR ERVK -2 526 1 9 1524 1816 213 20 65 chr6 123095679 123096081 -26420956 - ORR1B1 LTR MaLR -1 393 10 1 1524 418 274 8 8 chr6 123096163 123096288 -26420749 + ORR1E LTR MaLR 18 142 -217 1 1524 305 286 159 26 chr6 123096380 123096531 -26420506 + ORR1E LTR MaLR 156 326 -44 1 1524 430 20 0 0 chr6 123097326 123097376 -26419661 + L1Md_T LINE L1 5537 5586 -297 1 1524 8400 37 0 0 chr6 123097376 123098372 -26418665 + L1Md_T LINE L1 5587 6582 0 1 1524 450 0 0 0 chr6 123099899 123099949 -26417088 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1524 3009 108 11 9 chr6 123100345 123100795 -26416242 - L1_Mus3 LINE L1 -2 6636 6186 1 1524 396 91 0 0 chr6 123100798 123100853 -26416184 + L1_Mus3 LINE L1 6294 6348 -290 1 1524 901 147 44 208 chr6 123100853 123101103 -26415934 + RMER21B LTR ERV1 634 842 0 1 1524 31 0 0 0 chr6 123101121 123101152 -26415885 + AT_rich Low_complexity Low_complexity 1 31 0 1 1524 4744 39 51 0 chr6 123101975 123102565 -26414472 - L1Md_F2 LINE L1 0 6582 5963 1 1524 188 67 0 32 chr6 123102566 123102597 -26414440 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1 1524 442 154 0 71 chr6 123102603 123102687 -26414350 - PB1D9 SINE Alu -1 119 42 1 1524 480 295 130 17 chr6 123102785 123102986 -26414051 + L1_Mur3 LINE L1 3088 3327 -2553 1 1524 3924 116 40 3 chr6 123102986 123103566 -26413471 - MT2B LTR ERVL 0 601 1 1 1524 480 295 130 17 chr6 123103566 123103726 -26413311 + L1_Mur3 LINE L1 3328 3489 -2391 1 1524 3008 183 119 21 chr6 123103732 123104453 -26412584 + Lx9 LINE L1 6842 7633 -11 1 1524 585 267 41 13 chr6 123104455 123104693 -26412344 - Lx5 LINE L1 -574 6886 6455 1 1524 773 276 9 18 chr6 123104722 123104943 -26412094 + Lx6 LINE L1 7149 7367 -93 1 1524 311 307 33 0 chr6 123105023 123105176 -26411861 + L1MD LINE L1 3512 3669 -2477 1 1524 426 20 0 0 chr6 123105176 123105227 -26411810 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1524 507 73 0 0 chr6 123105227 123105295 -26411742 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 1524 8071 148 35 6 chr6 123105338 123107091 -26409946 - Lx4A LINE L1 -1 7057 5246 1 1524 374 314 21 7 chr6 123107100 123107241 -26409796 - MLT2D LTR ERVL -267 147 5 1 1524 22 56 0 0 chr6 123107246 123107282 -26409755 + AT_rich Low_complexity Low_complexity 1 36 0 1 1524 531 112 0 0 chr6 123107347 123107427 -26409610 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 1 1524 6657 48 39 0 chr6 123107428 123108335 -26408702 - L1Md_F2 LINE L1 0 6582 5668 1 1524 2637 109 55 43 chr6 123108335 123108804 -26408233 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1524 11673 31 1 10 chr6 123108814 123110270 -26406767 + IAPEz-int LTR ERVK 35 1477 -5004 1 1524 1734 103 8 0 chr6 123110265 123110517 -26406520 + IAPEz-int LTR ERVK 2244 2497 -5183 1 1524 871 91 22 15 chr6 123110503 123110637 -26406400 + IAPEy-int LTR ERVK 4792 4926 -2587 1 1524 24934 11 3 0 chr6 123110637 123113584 -26403453 + IAPEz-int LTR ERVK 3525 6481 0 1 1524 2603 103 86 38 chr6 123113584 123114037 -26403000 + IAPLTR2_Mm LTR ERVK 1 475 0 1 1524 25260 78 16 1 chr6 123114037 123117668 -26399369 - L1Md_F LINE L1 -210 5673 1986 1 1524 4498 91 9 0 chr6 123117675 123118313 -26398724 - L1Md_F LINE L1 -5623 993 350 1 1524 1168 88 6 0 chr6 123118314 123118485 -26398552 - L1_Mur2 LINE L1 -623 5254 5083 1 1524 1021 182 160 38 chr6 123118486 123118749 -26398288 - RLTR12B LTR ERVK -233 295 1 1 1524 444 281 52 71 chr6 123118778 123119036 -26398001 - L1MDa LINE L1 -5113 1989 1580 1 1524 1874 169 53 58 chr6 123119112 123119508 -26397529 - ORR1B1 LTR MaLR 0 394 1 1 1524 713 309 32 81 chr6 123119576 123119705 -26397332 + ORR1E LTR MaLR 1 128 -231 1 1524 360 0 0 0 chr6 123119705 123119745 -26397292 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1524 713 309 32 81 chr6 123119745 123119925 -26397112 + ORR1E LTR MaLR 129 294 -65 1 1524 2707 203 30 30 chr6 123120308 123120872 -26396165 + RLTR17 LTR ERVK 1 564 -128 1 1524 21 0 0 0 chr6 123121958 123121979 -26395058 + AT_rich Low_complexity Low_complexity 1 21 0 1 1524 248 242 146 57 chr6 123122011 123122161 -26394876 + RMER10A LTR ERVL 204 366 -76 1 1524 420 20 0 0 chr6 123122161 123122210 -26394827 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1524 279 127 48 0 chr6 123122217 123122280 -26394757 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 1524 857 262 59 30 chr6 123122340 123122576 -26394461 - B4 SINE B4 -30 262 20 1 1524 429 81 0 0 chr6 123123403 123123465 -26393572 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1524 589 205 25 93 chr6 123123836 123123997 -26393040 - B1_Mur4 SINE Alu 0 150 1 1 1524 21 36 0 0 chr6 123124714 123124742 -26392295 + AT_rich Low_complexity Low_complexity 1 28 0 1 1524 2475 203 44 2 chr6 123124940 123125443 -26391594 - RLTR11A2 LTR ERVK 0 527 4 1 1524 819 220 42 35 chr6 123126523 123126782 -26390255 - MYSERV-int LTR ERVK -1080 5470 5210 1 1524 198 0 0 0 chr6 123126784 123126806 -26390231 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1524 871 192 54 5 chr6 123126858 123127062 -26389975 - MYSERV-int LTR ERVK -1528 5022 4809 1 1524 1453 196 28 82 chr6 123127086 123127476 -26389561 - MYSERV6-int LTR ERVK -7420 1539 1171 1 1524 1093 310 98 65 chr6 123127477 123128057 -26388980 + RMER20B LTR ERVK 7 605 -22 1 1524 7766 46 1 0 chr6 123128307 123129451 -26387586 - L1Md_F2 LINE L1 -12 6570 5426 1 1524 2337 239 30 6 chr6 123129453 123130086 -26386951 - MYSERV6-int LTR ERVK -7785 1174 527 1 1524 722 230 34 34 chr6 123130183 123130390 -26386647 - MYSERV6-int LTR ERVK -8636 323 117 1 1524 1242 105 39 0 chr6 123130717 123130898 -26386139 - B2_Mm2 SINE B2 -7 188 1 1 1524 246 207 0 44 chr6 123131444 123131535 -26385502 + GA-rich Low_complexity Low_complexity 3 89 0 1 1524 287 143 65 0 chr6 123131568 123131645 -26385392 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1524 1037 221 36 12 chr6 123131645 123131974 -26385063 - L1_Mur3 LINE L1 -6529 1183 847 1 1524 507 17 0 0 chr6 123132585 123132645 -26384392 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1524 286 312 49 37 chr6 123132857 123133020 -26384017 - L1MC3 LINE L1 -229 7556 7392 1 1524 1104 52 15 0 chr6 123133179 123133315 -26383722 - B1_Mus1 SINE Alu -10 138 1 1 1524 463 386 81 9 chr6 123133434 123133656 -26383381 - MLT1F LTR MaLR -148 400 163 1 1524 2183 134 17 39 chr6 123133656 123134067 -26382970 + Lx LINE L1 6228 6629 -25 1 1524 356 295 118 26 chr6 123134350 123134503 -26382534 + L1M5 LINE L1 5265 5431 -693 1 1524 895 305 124 9 chr6 123134989 123135409 -26381628 - Lx8 LINE L1 -101 7372 6905 1 1524 393 306 14 0 chr6 123135495 123135642 -26381395 - Lx6 LINE L1 -4 7456 7308 1 1524 360 252 29 19 chr6 123135641 123135746 -26381291 + Lx6 LINE L1 7195 7300 -160 1 1524 403 175 52 0 chr6 123135756 123135853 -26381184 - Lx9 LINE L1 -226 7418 7317 1 1524 49 18 0 0 chr6 123135932 123135988 -26381049 + AT_rich Low_complexity Low_complexity 1 56 0 1 1524 2340 112 89 5 chr6 123136081 123136476 -26380561 - BGLII_A LTR ERVK -17 428 1 1 1524 4940 169 65 4 chr6 123136476 123137603 -26379434 - MYSERV16_I-int LTR ERVK 0 2326 1132 1 1524 265 256 111 67 chr6 123137633 123137788 -26379249 - RMER4B LTR ERVK -11 574 297 1 1524 1108 236 58 72 chr6 123137788 123138303 -26378734 - MYSERV16_I-int LTR ERVK -1418 908 401 1 1524 773 264 80 54 chr6 123138360 123138754 -26378283 + MYSERV-int LTR ERVK 4260 4626 -1924 1 1524 3022 198 101 7 chr6 123138765 123139744 -26377293 - MYSERV6-int LTR ERVK -4750 4209 3139 1 1524 28003 116 9 18 chr6 123139750 123145629 -26371408 - L1_Mus2 LINE L1 0 6566 752 1 1524 347 0 0 0 chr6 123145691 123145731 -26371306 - U2 snRNA snRNA -148 40 1 1 1524 4028 195 21 14 chr6 123145738 123146630 -26370407 - Lx2B LINE L1 -319 6681 5783 1 1524 26 50 0 0 chr6 123146630 123146670 -26370367 + AT_rich Low_complexity Low_complexity 1 40 0 1 1524 2005 9 0 0 chr6 123146990 123147217 -26369820 - L1Md_A LINE L1 0 6582 6356 1 1524 14471 161 32 15 chr6 123147217 123150181 -26366856 - Lx2B LINE L1 -88 5789 2775 1 1524 591 338 126 15 chr6 123150495 123150901 -26366136 - L1MDa LINE L1 -5354 1279 829 1 1524 463 301 27 55 chr6 123152496 123152679 -26364358 - B3 SINE B2 -37 179 2 1 1524 1897 155 49 149 chr6 123152858 123153367 -26363670 - RMER6B LTR ERVK -3 458 1 1 1524 1663 164 3 0 chr6 123153387 123153699 -26363338 + Lx3C LINE L1 4545 4857 -1029 1 1524 23 0 0 0 chr6 123154668 123154691 -26362346 + AT_rich Low_complexity Low_complexity 1 23 0 1 1524 525 32 0 0 chr6 123154768 123154831 -26362206 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1524 3493 28 0 0 chr6 123154856 123155252 -26361785 + MTA_Mm LTR MaLR 1 396 0 1 1524 9270 19 19 1 chr6 123155252 123156331 -26360706 + MTA_Mm-int LTR MaLR 1 1098 0 1 1524 3555 18 0 0 chr6 123156331 123156727 -26360310 + MTA_Mm LTR MaLR 1 396 0 1 1524 1796 262 102 33 chr6 123157417 123157957 -26359080 + RMER19B LTR ERVK 326 902 0 1 1524 213 39 0 0 chr6 123158024 123158050 -26358987 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1524 3827 114 6 50 chr6 123158144 123158406 -26358631 - L1_Mur1 LINE L1 -346 5540 5306 1 1524 4165 122 32 15 chr6 123158406 123159054 -26357983 - Lx LINE L1 -4 6650 5992 1 1524 3827 114 6 50 chr6 123159054 123159486 -26357551 - L1_Mur1 LINE L1 -581 5305 4877 1 1524 6545 154 45 59 chr6 123159484 123159759 -26357278 + Lx3C LINE L1 5526 5796 -90 1 1524 1080 81 0 13 chr6 123159759 123159896 -26357141 + B1_Mus1 SINE Alu 1 137 -11 1 1524 252 59 0 0 chr6 123159896 123159930 -26357107 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1524 1080 81 0 13 chr6 123159930 123159942 -26357095 + B1_Mus1 SINE Alu 138 148 0 1 1524 6545 153 55 55 chr6 123159942 123160821 -26356216 + Lx3C LINE L1 5797 6644 -332 1 1524 2570 54 65 6 chr6 123160821 123161158 -26355879 - IAPEY2_LTR LTR ERVK 0 357 1 1 1524 6545 153 55 55 chr6 123161158 123161452 -26355585 + Lx3C LINE L1 6645 6972 -4 1 1524 218 179 0 0 chr6 123161452 123161491 -26355546 + (ATG)n Simple_repeat Simple_repeat 3 41 0 1 1524 2118 148 3 3 chr6 123161908 123162246 -26354791 + ORR1A1 LTR MaLR 1 338 -8 1 1524 805 204 7 26 chr6 123162319 123162470 -26354567 - B1_Mur1 SINE Alu -1 148 1 1 1524 247 295 85 23 chr6 123162561 123162738 -26354299 - L1M3 LINE L1 -2175 3965 3778 1 1524 2373 127 21 7 chr6 123162738 123163157 -26353880 + L1_Mur2 LINE L1 2478 2902 -2975 1 1524 572 240 134 21 chr6 123163525 123163763 -26353274 - RLTR10A LTR ERVK 0 411 147 1 1524 972 260 60 34 chr6 123163931 123164062 -26352975 + ORR1E LTR MaLR 1 133 -226 1 1524 189 121 0 0 chr6 123164062 123164095 -26352942 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1524 972 260 60 34 chr6 123164095 123164313 -26352724 + ORR1E LTR MaLR 134 358 -1 1 1524 288 0 0 0 chr6 123164406 123164438 -26352599 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1 1524 3069 170 7 49 chr6 123164439 123165014 -26352023 - Lx4B LINE L1 -18 7040 6490 1 1524 293 224 0 0 chr6 123165018 123165076 -26351961 + L1_Mur2 LINE L1 2985 3042 -2835 1 1524 2358 168 24 2 chr6 123165483 123165895 -26351142 - MTC LTR MaLR 0 421 1 1 1524 5435 116 9 4 chr6 123167132 123168755 -26348282 + L1VL2 LINE L1 94 1725 -1890 1 1524 508 120 0 107 chr6 123169509 123169567 -26347470 + L1_Mm LINE L1 2012 2062 -3821 1 1524 1146 51 147 0 chr6 123169567 123169724 -26347313 - L1Md_T LINE L1 -1 6581 6402 2 1524 508 120 0 107 chr6 123169724 123169786 -26347251 + L1_Mm LINE L1 2063 2119 -3764 1 1524 225 128 0 0 chr6 123169792 123169839 -26347198 - Lx LINE L1 -1 6653 6607 2 1524 1343 147 4 4 chr6 123169838 123170091 -26346946 - L1_Mm LINE L1 -1523 4360 4108 2 1524 22272 134 11 9 chr6 123170093 123174784 -26342253 + L1_Mus3 LINE L1 1934 6630 -8 2 1524 8781 18 1 0 chr6 123174914 123175972 -26341065 + L1Md_T LINE L1 4528 5586 -297 2 1524 8448 33 0 1 chr6 123175972 123176968 -26340069 + L1Md_T LINE L1 5587 6581 -1 2 1524 248 270 104 57 chr6 123177934 123178040 -26338997 - MER21B LTR ERV1 -598 265 155 2 1524 1078 109 0 0 chr6 123178941 123179088 -26337949 + B1_Mus1 SINE Alu 2 148 0 2 1524 288 77 0 0 chr6 123179088 123179127 -26337910 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1524 486 120 0 0 chr6 123179475 123179550 -26337487 + (TATG)n Simple_repeat Simple_repeat 1 75 0 2 1524 381 22 0 0 chr6 123180330 123180376 -26336661 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1524 844 182 0 33 chr6 123180695 123180848 -26336189 - B1_Mur4 SINE Alu 0 150 3 2 1524 29 0 0 0 chr6 123181602 123181631 -26335406 + AT_rich Low_complexity Low_complexity 1 29 0 2 1524 261 0 0 0 chr6 123182322 123182351 -26334686 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1524 315 0 0 0 chr6 123182351 123182385 -26334652 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1524 477 0 0 0 chr6 123182506 123182559 -26334478 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1524 25 31 0 0 chr6 123182916 123182948 -26334089 + AT_rich Low_complexity Low_complexity 1 32 0 2 1524 364 248 124 0 chr6 123183216 123183321 -26333716 - B1F SINE Alu -8 141 24 2 1524 453 294 75 4 chr6 123183660 123183796 -26333241 + B1F2 SINE Alu 8 148 -1 2 1524 2747 187 20 13 chr6 123183826 123184508 -26332529 - L1_Mur3 LINE L1 -4016 1864 1176 2 1524 885 88 0 0 chr6 123184716 123184853 -26332184 + (GA)n Simple_repeat Simple_repeat 2 138 0 2 1524 288 272 29 0 chr6 123184854 123184957 -26332080 + Lx7 LINE L1 7591 7696 0 2 1524 251 301 108 0 chr6 123185194 123185287 -26331750 - MIR SINE MIR -6 256 154 2 1524 519 227 70 112 chr6 123185751 123186029 -26331008 - L1MB1 LINE L1 -150 6018 5754 2 1524 347 259 108 0 chr6 123186028 123186186 -26330851 - L1MA9 LINE L1 0 6312 6138 2 1524 258 226 104 24 chr6 123186183 123186306 -26330731 - L1MB1 LINE L1 -430 5741 5611 2 1524 631 292 47 9 chr6 123186460 123186674 -26330363 - Lx9 LINE L1 -170 7303 7082 2 1524 288 219 16 0 chr6 123186746 123186810 -26330227 - Lx9 LINE L1 -569 6904 6840 2 1524 602 339 72 62 chr6 123186808 123186884 -26330153 - Lx9 LINE L1 -1144 6329 6254 2 1524 369 0 0 0 chr6 123186884 123186925 -26330112 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 2 1524 891 144 225 0 chr6 123186930 123187090 -26329947 - B3 SINE B2 -19 197 2 2 1524 886 291 82 26 chr6 123187090 123187762 -26329275 - Lx9 LINE L1 -1222 6251 5535 2 1524 621 316 47 5 chr6 123187782 123187995 -26329042 - MLT2B1 LTR ERVL -287 233 12 2 1524 38461 21 0 6 chr6 123188038 123194223 -26322814 - L1Md_A LINE L1 0 6582 440 2 1524 188 312 60 48 chr6 123194797 123194881 -26322156 - MIRb SINE MIR -157 111 27 2 1524 1121 81 0 20 chr6 123194882 123195033 -26322004 + B1_Mus1 SINE Alu 1 148 0 2 1524 22 35 0 0 chr6 123195332 123195361 -26321676 + AT_rich Low_complexity Low_complexity 1 29 0 2 1524 1790 251 128 54 chr6 123195420 123196102 -26320935 - Lx6 LINE L1 0 7460 6729 2 1524 706 242 124 32 chr6 123196739 123197055 -26319982 + MTD LTR MaLR 3 369 -38 2 1524 1168 75 0 0 chr6 123197159 123197305 -26319732 - B1_Mus1 SINE Alu -2 146 1 2 1524 455 389 78 13 chr6 123197414 123197646 -26319391 - MLT1F LTR MaLR -139 409 163 2 1524 2243 112 20 37 chr6 123197646 123198055 -26318982 + Lx LINE L1 6228 6629 -25 2 1524 356 291 124 33 chr6 123198341 123198494 -26318543 + L1M5 LINE L1 5265 5431 -693 2 1524 908 299 126 13 chr6 123198982 123199409 -26317628 - Lx8 LINE L1 -99 7374 6893 2 1524 203 88 29 0 chr6 123199430 123199464 -26317573 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 2 1524 1559 44 6 3 chr6 123199514 123199858 -26317179 + (TTC)n Simple_repeat Simple_repeat 1 345 0 2 1524 1148 84 16 3 chr6 123199858 123200178 -26316859 + (TTCTCC)n Simple_repeat Simple_repeat 1 324 0 2 1524 524 182 0 0 chr6 123200182 123200270 -26316767 - B1_Mur2 SINE Alu -21 128 41 2 1524 241 266 88 61 chr6 123200204 123200352 -26316685 - RLTR25B LTR ERVK -519 509 358 2 1524 1924 239 105 57 chr6 123200374 123200988 -26316049 - L1_Mur3 LINE L1 -1071 4809 4206 2 1524 423 0 0 0 chr6 123200988 123201035 -26316002 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1524 1924 239 105 57 chr6 123201035 123201303 -26315734 - L1_Mur3 LINE L1 -1675 4205 3884 2 1524 2291 118 79 3 chr6 123201303 123201684 -26315353 - L1_Mus3 LINE L1 -6 6632 6223 2 1524 3271 171 0 2 chr6 123201683 123202211 -26314826 + Lx2B LINE L1 6473 6999 -1 2 1524 584 203 67 7 chr6 123202215 123202364 -26314673 + L1_Mur2 LINE L1 5257 5414 -463 2 1524 28 48 0 0 chr6 123203260 123203302 -26313735 + AT_rich Low_complexity Low_complexity 1 42 0 2 1524 240 121 16 49 chr6 123203407 123203468 -26313569 + (CATATA)n Simple_repeat Simple_repeat 3 61 0 2 1524 1235 266 45 34 chr6 123203468 123203973 -26313064 - Lx9 LINE L1 -128 7516 7006 2 1524 3174 48 8 2 chr6 123204530 123204924 -26312113 + MTA_Mm LTR MaLR 1 396 0 2 1524 1895 306 93 9 chr6 123204955 123205739 -26311298 + Lx8 LINE L1 6480 7329 -144 2 1524 369 109 0 0 chr6 123205759 123205814 -26311223 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1524 263 229 7 103 chr6 123205817 123205953 -26311084 + L1M2 LINE L1 5184 5306 -837 2 1524 666 37 0 0 chr6 123206070 123206151 -26310886 + (TC)n Simple_repeat Simple_repeat 2 82 0 2 1524 4684 134 27 97 chr6 123206346 123207315 -26309722 + RLTR13D6 LTR ERVK 2 902 0 2 190 3009 176 40 18 chr6 123207320 123207922 -26309115 + ETnERV2-int LTR ERVK 1 615 -6791 2 1525 871 221 52 26 chr6 123207937 123208128 -26308909 - B3 SINE B2 -1 215 20 2 1525 1055 123 0 0 chr6 123208153 123208299 -26308738 - B1_Mus1 SINE Alu 0 148 3 2 1525 316 297 32 118 chr6 123209142 123209363 -26307674 - B4A SINE B4 -45 247 46 2 1525 340 243 41 98 chr6 123209608 123209731 -26307306 + PB1D9 SINE Alu 3 118 -2 2 1525 266 0 29 0 chr6 123209731 123209765 -26307272 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1525 240 131 26 78 chr6 123211483 123211599 -26305438 + GA-rich Low_complexity Low_complexity 1 110 0 2 1525 456 346 20 0 chr6 123211604 123211757 -26305280 - MLT1A LTR MaLR -218 156 1 2 1525 713 128 8 0 chr6 123212385 123212510 -26304527 + (TCTA)n Simple_repeat Simple_repeat 3 128 0 2 1525 242 302 11 23 chr6 123212512 123212600 -26304437 + CT-rich Low_complexity Low_complexity 3 89 0 2 1525 369 374 14 28 chr6 123212603 123212746 -26304291 - ID_B1 SINE B4 0 224 84 2 1525 474 192 0 92 chr6 123213207 123213316 -26303721 + Lx8 LINE L1 7049 7147 -326 2 1525 227 146 0 18 chr6 123213631 123213687 -26303350 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2 1525 243 268 22 79 chr6 123213689 123213701 -26303336 - ID SINE ID -139 85 2 2 1525 251 239 13 78 chr6 123213701 123213778 -26303259 - ID4 SINE ID -10 73 2 2 1525 296 307 47 8 chr6 123213800 123213928 -26303109 - B1F SINE Alu -15 134 2 2 1525 507 193 184 0 chr6 123214049 123214163 -26302874 + RSINE1 SINE B4 3 137 -28 2 1525 768 118 0 0 chr6 123214166 123214293 -26302744 + (CA)n Simple_repeat Simple_repeat 2 128 0 2 1525 1847 133 6 72 chr6 123214566 123214913 -26302124 + Lx2A1 LINE L1 6674 6997 -11 2 1525 189 0 0 0 chr6 123215063 123215084 -26301953 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1525 650 361 84 59 chr6 123215998 123216746 -26300291 + L1ME3A LINE L1 5395 6161 -12 2 1525 276 289 85 99 chr6 123217326 123217414 -26299623 - ID_B1 SINE B4 -2 290 70 2 1525 395 256 28 0 chr6 123217414 123217523 -26299514 - PB1D9 SINE Alu -6 114 3 2 1525 276 289 85 99 chr6 123217523 123217543 -26299494 - ID SINE ID -2 69 15 2 1525 1353 260 75 11 chr6 123218200 123218558 -26298479 - MTD LTR MaLR -15 404 24 2 1525 334 145 0 42 chr6 123218828 123218900 -26298137 - Lx6 LINE L1 -4 7456 7388 2 1525 374 208 0 0 chr6 123218917 123218989 -26298048 - Lx6 LINE L1 -305 7155 7084 2 1525 1636 242 13 5 chr6 123219596 123219970 -26297067 - Lx6 LINE L1 -5 7455 7079 2 1525 387 0 0 0 chr6 123220227 123220270 -26296767 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1525 396 350 27 27 chr6 123220797 123220944 -26296093 + B1F SINE Alu 1 147 -2 2 1525 444 37 0 0 chr6 123220948 123221002 -26296035 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1525 1895 332 91 5 chr6 123221312 123222251 -26294786 - Lx8 LINE L1 -224 7249 6231 2 1525 1045 29 22 0 chr6 123222275 123222411 -26294626 + (TCTA)n Simple_repeat Simple_repeat 3 141 0 2 1525 3979 251 67 40 chr6 123222415 123222948 -26294089 - L1_Mur3 LINE L1 -29 5851 5324 2 1525 4179 69 11 5 chr6 123222948 123223502 -26293535 - L1_Mus1 LINE L1 0 6567 6011 2 1525 3979 251 67 40 chr6 123223502 123224055 -26292982 - L1_Mur3 LINE L1 -557 5323 4725 2 1525 221 0 0 33 chr6 123224055 123224085 -26292952 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1525 3979 251 67 40 chr6 123224085 123224534 -26292503 - L1_Mur3 LINE L1 -1156 4724 4273 2 1525 693 305 40 0 chr6 123225311 123225534 -26291503 - Lx6 LINE L1 -26 7434 7203 2 1525 270 0 0 0 chr6 123225846 123225876 -26291161 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1525 1459 48 16 21 chr6 123225982 123226015 -26291022 - B2_Mm1t SINE B2 0 193 161 2 1525 222 37 0 0 chr6 123226015 123226042 -26290995 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 1525 1459 48 16 21 chr6 123226042 123226201 -26290836 - B2_Mm1t SINE B2 -33 160 2 2 1525 7116 83 2 0 chr6 123226304 123227703 -26289334 - L1_Mus2 LINE L1 -12 6554 5152 2 1525 221 286 154 0 chr6 123227849 123227940 -26289097 + B4 SINE B4 1 105 -187 2 1525 565 284 0 138 chr6 123227872 123228083 -26288954 + B3A SINE B2 35 216 0 2 1525 500 0 17 0 chr6 123228696 123228756 -26288281 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1525 423 0 0 0 chr6 123228756 123228802 -26288235 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1525 55 48 0 0 chr6 123229080 123229163 -26287874 + AT_rich Low_complexity Low_complexity 1 83 0 3 1525 373 247 30 5 chr6 123229336 123229479 -26287558 + L1_Mur2 LINE L1 4866 5012 -835 3 1525 296 353 23 57 chr6 123229632 123229809 -26287228 + RMER5 LTR ERV1 243 413 -121 3 1525 2882 24 62 0 chr6 123229937 123230273 -26286764 - IAPEY2_LTR LTR ERVK 0 357 1 3 1525 5213 117 28 11 chr6 123230717 123231537 -26285500 + Lx LINE L1 5819 6652 -2 3 1525 1229 54 0 0 chr6 123231606 123231754 -26285283 - B1_Mus1 SINE Alu 0 148 1 3 1525 267 200 45 15 chr6 123231934 123232000 -26285037 + MTD LTR MaLR 338 405 -14 3 1525 668 278 44 24 chr6 123232003 123232254 -26284783 + L1_Mur3 LINE L1 3732 3987 -1893 3 1525 550 290 93 37 chr6 123232247 123232569 -26284468 + Lx8 LINE L1 7131 7470 -3 3 1525 189 295 115 0 chr6 123233771 123233849 -26283188 - MIRb SINE MIR -52 216 130 3 1525 5968 119 31 16 chr6 123234162 123235102 -26281935 + Lx3A LINE L1 6024 6977 -4 3 1525 207 196 0 0 chr6 123235104 123235150 -26281887 + A-rich Low_complexity Low_complexity 3 48 0 3 1525 21 36 0 0 chr6 123235613 123235641 -26281396 + AT_rich Low_complexity Low_complexity 1 28 0 3 1525 907 177 114 20 chr6 123237135 123237337 -26279700 + URR1A DNA MER1_type 5 225 -1 3 1525 1137 279 54 88 chr6 123237349 123237910 -26279127 + RMER20B LTR ERVK 1 599 -28 3 1525 315 313 0 20 chr6 123237900 123238001 -26279036 + RMER20B LTR ERVK 504 602 -25 3 1525 500 340 56 17 chr6 123238012 123238314 -26278723 + Lx8 LINE L1 6777 7090 -383 3 1525 338 42 21 0 chr6 123238590 123238638 -26278399 + (CTAAA)n Simple_repeat Simple_repeat 2 50 0 3 1525 215 303 28 36 chr6 123239444 123239601 -26277436 - MIR SINE MIR -93 169 28 3 1525 237 237 0 73 chr6 123241248 123241330 -26275707 - L1_Rod LINE L1 -1389 4458 4383 3 1525 2373 116 6 11 chr6 123241330 123241696 -26275341 - L1_Mus4 LINE L1 -1 6635 6272 3 1525 26 0 0 0 chr6 123241696 123241722 -26275315 + AT_rich Low_complexity Low_complexity 1 26 0 3 1525 5019 135 4 34 chr6 123241722 123243246 -26273791 - L1VL4 LINE L1 -1886 1673 182 3 1525 252 0 0 0 chr6 123243502 123243530 -26273507 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1525 1090 189 44 94 chr6 123243539 123243878 -26273159 - RLTRETN_Mm LTR ERVK 0 322 1 3 1525 1641 266 54 22 chr6 123243883 123244555 -26272482 - L1_Mur3 LINE L1 -1767 4113 3421 3 1525 2035 62 4 0 chr6 123244557 123244814 -26272223 + L1_Mus1 LINE L1 6310 6567 0 3 1525 21 36 0 0 chr6 123244820 123244848 -26272189 + AT_rich Low_complexity Low_complexity 1 28 0 3 1525 25 65 0 0 chr6 123245830 123245876 -26271161 + AT_rich Low_complexity Low_complexity 1 46 0 3 1525 301 292 79 77 chr6 123246267 123246728 -26270309 - L1_Mur3 LINE L1 -2507 3373 2901 3 1525 1012 210 55 0 chr6 123246728 123246928 -26270109 - B3 SINE B2 -5 211 1 3 1525 301 292 79 77 chr6 123246928 123247063 -26269974 - L1_Mur3 LINE L1 -2980 2900 2776 3 1525 1111 195 54 29 chr6 123247066 123247346 -26269691 - RLTR12B LTR ERVK 0 528 242 3 1525 183 80 0 0 chr6 123247346 123247371 -26269666 + (TCC)n Simple_repeat Simple_repeat 1 25 0 3 1525 1253 189 123 45 chr6 123247371 123247681 -26269356 - RLTR12B LTR ERVK -194 334 1 3 1525 1712 258 50 25 chr6 123247688 123248367 -26268670 - L1_Mur3 LINE L1 -3109 2771 2076 3 1525 2616 91 15 77 chr6 123248518 123248997 -26268040 - RMER17A LTR ERVK 0 751 303 3 1525 1364 6 0 0 chr6 123248998 123249161 -26267876 - L1Md_A LINE L1 -633 5250 5088 3 1525 2727 15 0 3 chr6 123249160 123249490 -26267547 + L1Md_A LINE L1 5258 5586 -297 3 1525 8509 29 0 0 chr6 123249490 123250486 -26266551 + L1Md_A LINE L1 5587 6582 0 3 1525 2171 89 22 9 chr6 123250486 123250803 -26266234 - RMER17A LTR ERVK -430 321 1 3 1525 847 317 52 23 chr6 123250807 123251421 -26265616 - L1_Rod LINE L1 -3967 1880 1249 3 1525 2245 289 60 15 chr6 123251609 123252683 -26264354 - Lx5 LINE L1 -43 7417 6071 3 1525 3567 189 29 51 chr6 123252688 123253118 -26263919 + L1_Mur2 LINE L1 1149 1580 -4297 3 1525 1016 145 16 16 chr6 123253118 123253307 -26263730 + L1_Mus3 LINE L1 6447 6635 -3 3 1525 3567 190 45 88 chr6 123253307 123253422 -26263615 + L1_Mur2 LINE L1 1581 1686 -4191 3 1525 225 0 0 0 chr6 123253422 123253447 -26263590 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 3 1525 3567 190 45 88 chr6 123253447 123253643 -26263394 + L1_Mur2 LINE L1 1687 1902 -3975 3 1525 1782 138 9 59 chr6 123253643 123253982 -26263055 + RLTRETN_Mm LTR ERVK 1 322 0 3 1525 3567 190 45 88 chr6 123253982 123254456 -26262581 + L1_Mur2 LINE L1 1903 2315 -3562 3 1525 373 273 92 20 chr6 123254906 123255059 -26261978 - RLTR13C2 LTR ERVK -7 801 638 3 1525 239 247 146 12 chr6 123255685 123255767 -26261270 - RLTR13C2 LTR ERVK -1021 93 1 3 1525 1720 214 32 2 chr6 123255773 123256181 -26260856 + L1_Mur2 LINE L1 2320 2739 -3138 3 1525 1293 128 18 5 chr6 123256195 123256414 -26260623 + Lx5 LINE L1 5587 5808 -1242 3 1525 573 240 16 0 chr6 123256415 123256540 -26260497 + ETnERV2-int LTR ERVK 7070 7196 -210 3 1525 694 187 48 0 chr6 123256938 123257098 -26259939 + Lx5 LINE L1 5799 5965 -1495 3 1525 22 0 0 0 chr6 123257264 123257286 -26259751 + AT_rich Low_complexity Low_complexity 1 22 0 3 1525 250 247 171 12 chr6 123257311 123257393 -26259644 + PB1 SINE Alu 7 101 -26 3 1525 204 208 42 0 chr6 123257498 123257546 -26259491 + GA-rich Low_complexity Low_complexity 3 52 0 3 1525 493 259 89 11 chr6 123258717 123258908 -26258129 - Lx8 LINE L1 -84 7389 7184 3 1525 787 206 0 14 chr6 123259239 123259382 -26257655 + B1_Mur1 SINE Alu 9 149 0 3 1525 34 0 0 0 chr6 123259572 123259606 -26257431 + AT_rich Low_complexity Low_complexity 1 34 0 3 1525 2734 64 58 0 chr6 123260179 123260555 -26256482 - L1_Mus1 LINE L1 0 6567 6170 3 1525 453 259 127 22 chr6 123261070 123261204 -26255833 - B1_Mur2 SINE Alu 0 149 2 3 1525 24 77 0 0 chr6 123261210 123261262 -26255775 + AT_rich Low_complexity Low_complexity 1 52 0 3 1525 456 289 154 34 chr6 123261435 123261968 -26255069 - L1M2 LINE L1 -1152 4991 4395 3 1525 371 335 82 57 chr6 123261980 123262297 -26254740 - L1M2 LINE L1 -1736 4407 4083 3 1525 21 0 0 0 chr6 123262537 123262558 -26254479 + AT_rich Low_complexity Low_complexity 1 21 0 3 1525 1227 34 0 0 chr6 123262570 123262718 -26254319 + (GA)n Simple_repeat Simple_repeat 2 149 0 3 1525 255 227 30 0 chr6 123263010 123263076 -26253961 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1525 551 320 89 26 chr6 123263076 123263373 -26253664 - B4A SINE B4 -3 289 1 3 1525 188 277 46 0 chr6 123263451 123263516 -26253521 - L3 LINE CR1 -1784 2705 2638 3 1525 1049 119 0 0 chr6 123264152 123264295 -26252742 + B1_Mus1 SINE Alu 1 143 -5 3 1525 273 255 0 0 chr6 123266797 123266848 -26250189 + PB1D10 SINE Alu 60 110 -7 3 1525 245 232 29 14 chr6 123266987 123267057 -26249980 - L1M5 LINE L1 -699 5541 5471 3 1525 260 323 7 15 chr6 123267311 123267446 -26249591 - L1M2 LINE L1 -689 5479 5346 3 1525 326 245 47 9 chr6 123267520 123267627 -26249410 - L1M2 LINE L1 -884 5256 5146 3 1525 1626 72 0 5 chr6 123267651 123267873 -26249164 + L1Md_F2 LINE L1 6357 6577 -5 3 1525 473 293 222 18 chr6 123267875 123268383 -26248654 - L1M2 LINE L1 -1059 5084 4473 3 1525 186 43 0 0 chr6 123268383 123268406 -26248631 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1525 279 0 0 0 chr6 123268536 123268567 -26248470 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1525 369 0 0 0 chr6 123268569 123268610 -26248427 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1525 452 331 20 34 chr6 123268615 123268762 -26248275 - B3A SINE B2 -26 172 28 3 1525 1050 269 69 9 chr6 123269010 123269359 -26247678 + ORR1D2 LTR MaLR 1 370 0 3 1525 285 118 0 0 chr6 123269430 123269481 -26247556 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1525 562 294 81 40 chr6 123269603 123269778 -26247259 - L1MA4A LINE L1 -373 5930 5746 3 1525 913 268 90 14 chr6 123269778 123270122 -26246915 - ORR1D2 LTR MaLR 0 370 1 3 1525 562 294 81 40 chr6 123270122 123270368 -26246669 - L1MA4A LINE L1 -558 5745 5492 3 1525 1128 262 89 31 chr6 123270368 123270716 -26246321 - ORR1D2 LTR MaLR -2 419 1 3 1525 366 338 105 0 chr6 123270878 123271106 -26245931 - Lx8 LINE L1 -181 7292 7041 3 1525 24 53 0 0 chr6 123271190 123271228 -26245809 + AT_rich Low_complexity Low_complexity 1 38 0 3 1525 419 266 18 0 chr6 123271414 123271523 -26245514 - Lx7 LINE L1 -397 7299 7189 3 1525 191 88 0 29 chr6 123271562 123271597 -26245440 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 3 1525 4830 154 39 35 chr6 123271616 123272116 -26244921 - Lx LINE L1 0 6654 6129 3 1525 215 219 30 30 chr6 123272116 123272182 -26244855 + BC1_Mm scRNA scRNA 28 93 -59 3 1525 4830 154 39 35 chr6 123272182 123272961 -26244076 - Lx LINE L1 0 6128 5308 3 1525 10535 88 56 51 chr6 123272966 123274606 -26242431 - L1Md_F2 LINE L1 -12 6570 4734 3 1525 333 0 0 0 chr6 123274606 123274643 -26242394 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 3 1525 10535 150 125 125 chr6 123274643 123275210 -26241827 - L1Md_F2 LINE L1 -1150 4733 4119 3 1525 2038 76 94 39 chr6 123275210 123275540 -26241497 - RLTR10B2 LTR ERVK 0 365 18 3 1525 10535 150 125 125 chr6 123275540 123275554 -26241483 - L1Md_F2 LINE L1 -1765 4118 4104 3 1525 281 28 0 0 chr6 123275554 123275590 -26241447 - RLTR10B2 LTR ERVK -256 36 1 3 1525 10535 150 125 125 chr6 123275590 123277032 -26240005 - L1Md_F2 LINE L1 -1150 4103 2536 3 1525 404 94 0 0 chr6 123277028 123277092 -26239945 - L1_Mur1 LINE L1 -2136 3750 3687 3 1525 2193 221 14 0 chr6 123277107 123277591 -26239446 - L1_Mur3 LINE L1 -53 5827 5337 3 1525 3887 161 80 81 chr6 123277591 123278494 -26238543 + RLTR13D6 LTR ERVK 1 902 0 3 1525 2235 230 76 45 chr6 123278494 123279559 -26237478 - L1_Mur3 LINE L1 -536 5350 4142 3 1525 432 37 0 0 chr6 123279646 123279700 -26237337 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1525 654 244 70 13 chr6 123280161 123280386 -26236651 + RMER12 LTR ERVK 1124 1322 0 3 1525 933 178 25 4 chr6 123280393 123280649 -26236388 - RMER6C LTR ERVK -378 312 6 3 1525 524 39 37 61 chr6 123280908 123280990 -26236047 - B1_Mus2 SINE Alu 0 147 68 3 1525 39 38 0 0 chr6 123281198 123281251 -26235786 + AT_rich Low_complexity Low_complexity 1 53 0 3 1525 678 75 0 0 chr6 123281283 123281376 -26235661 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 1525 504 244 86 36 chr6 123281834 123281974 -26235063 + B1_Mur4 SINE Alu 3 149 -1 3 1525 1123 234 94 68 chr6 123282859 123283285 -26233752 - RMER1B Other Other -4 1062 626 3 1525 1293 318 14 16 chr6 123283341 123283952 -26233085 - RMER1A Other Other -575 455 2 3 1525 763 162 12 6 chr6 123284209 123284370 -26232667 + CT-rich Low_complexity Low_complexity 3 164 0 3 1525 869 80 128 0 chr6 123284373 123284498 -26232539 - B1_Mus1 SINE Alu -6 142 2 3 1525 297 280 45 59 chr6 123284508 123284640 -26232397 - B1_Mur2 SINE Alu 0 149 1 3 1525 625 158 0 0 chr6 123284640 123284716 -26232321 - B1_Mus1 SINE Alu -71 77 2 3 1525 802 285 117 8 chr6 123284804 123285189 -26231848 + Lx8 LINE L1 6974 7400 -73 3 1525 21 36 0 0 chr6 123288293 123288321 -26228716 + AT_rich Low_complexity Low_complexity 1 28 0 3 1525 24 0 0 0 chr6 123289222 123289246 -26227791 + AT_rich Low_complexity Low_complexity 1 24 0 4 1525 1888 246 39 0 chr6 123289622 123290062 -26226975 + Lx6 LINE L1 6827 7283 -177 4 1525 5434 156 14 10 chr6 123290438 123291414 -26225623 - Lx LINE L1 -9 6645 5666 4 1525 1075 144 5 9 chr6 123291420 123291637 -26225400 - MusHAL1 LINE L1 -562 2150 1935 4 1525 805 170 0 0 chr6 123291692 123291827 -26225210 + B1_Mus1 SINE Alu 5 139 -9 4 1525 186 43 0 0 chr6 123291827 123291850 -26225187 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1525 2330 236 36 45 chr6 123291861 123292657 -26224380 + L1_Mur2 LINE L1 1951 2739 -3138 4 1525 1829 154 19 16 chr6 123292671 123293035 -26224002 + Lx5 LINE L1 5587 5951 -1099 4 1525 688 244 0 0 chr6 123295208 123295343 -26221694 + B1_Mur1 SINE Alu 9 143 -6 4 1525 344 329 49 21 chr6 123296654 123296797 -26220240 - B1F2 SINE Alu -1 148 2 4 1525 481 317 113 30 chr6 123297026 123297452 -26219585 - L1M2 LINE L1 -1152 4991 4531 4 1525 25551 60 12 4 chr6 123297564 123301783 -26215254 - L1Md_T LINE L1 0 6582 2154 4 1525 495 0 0 0 chr6 123301783 123301838 -26215199 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1525 16664 203 61 17 chr6 123301838 123302653 -26214384 - L1Md_T LINE L1 -3724 2153 1354 4 1525 3394 102 0 20 chr6 123302668 123303168 -26213869 - L1_Mus1 LINE L1 0 6567 6078 4 1525 3530 90 8 7 chr6 123303168 123303783 -26213254 - L1_Mus1 LINE L1 -663 5904 5291 4 1525 3868 146 82 26 chr6 123303895 123304230 -26212807 + RMER17D2 LTR ERVK 1 341 -468 4 1525 680 0 0 12 chr6 123304230 123304311 -26212726 + (TCTCC)n Simple_repeat Simple_repeat 2 81 0 4 1525 3868 146 82 26 chr6 123304311 123304741 -26212296 + RMER17D2 LTR ERVK 342 808 -1 4 1525 349 250 0 41 chr6 123304797 123304918 -26212119 - Lx2B LINE L1 -6 6994 6879 4 1525 312 291 68 0 chr6 123305892 123306009 -26211028 - L1M2 LINE L1 -3117 3026 2902 4 1525 240 244 13 0 chr6 123306249 123306327 -26210710 + L1M4 LINE L1 4195 4273 -1873 4 1525 32 0 0 0 chr6 123306547 123306579 -26210458 + AT_rich Low_complexity Low_complexity 1 32 0 4 1525 199 381 77 12 chr6 123307264 123307434 -26209603 + MIRb SINE MIR 65 245 -23 4 1525 390 346 0 0 chr6 123307569 123307670 -26209367 + PB1 SINE Alu 3 103 -24 4 1525 647 193 89 0 chr6 123307745 123307880 -26209157 - B1_Mus1 SINE Alu 0 148 2 4 1525 12225 95 2 2 chr6 123307918 123309771 -26207266 + L1_Mm LINE L1 2436 4288 -1595 4 1525 5188 172 17 26 chr6 123309775 123311101 -26205936 + L1Md_T LINE L1 99 1205 -5411 4 1525 35827 33 22 0 chr6 123311107 123316273 -26200764 + L1Md_T LINE L1 1170 6447 -135 4 1525 2916 24 3 0 chr6 123316273 123316609 -26200428 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1525 20256 12 1 0 chr6 123316609 123318965 -26198072 - IAPEz-int LTR ERVK 0 6481 4123 4 1525 886 73 24 0 chr6 123318967 123319090 -26197947 - IAPEz-int LTR ERVK -2770 4910 4785 4 1525 1723 115 4 4 chr6 123319087 123319349 -26197688 - IAPEz-int LTR ERVK -5183 2497 2236 4 1525 424 38 0 0 chr6 123319348 123319401 -26197636 - IAPEz-int LTR ERVK -5070 1411 1359 4 1525 2911 73 7 21 chr6 123319401 123319820 -26197217 - IAPEz-int LTR ERVK -5819 662 250 4 1525 2844 76 32 2 chr6 123319787 123320194 -26196843 - IAPEz-int LTR ERVK -6055 426 8 4 1525 2937 21 3 0 chr6 123320194 123320530 -26196507 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1525 1018 64 0 0 chr6 123320530 123320671 -26196366 + L1Md_T LINE L1 6442 6582 0 4 1525 10028 97 3 61 chr6 123320672 123320806 -26196231 + L1_Mus2 LINE L1 4280 4381 -1502 4 1525 2985 58 2 8 chr6 123320806 123321204 -26195833 + L1_Mus3 LINE L1 6240 6635 -3 4 1525 10028 97 3 61 chr6 123321204 123322168 -26194869 + L1_Mus2 LINE L1 4382 5303 -580 4 1525 4479 65 3 7 chr6 123322168 123322755 -26194282 + L1Md_F2 LINE L1 5997 6581 -1 4 1525 10028 97 3 61 chr6 123322755 123323063 -26193974 + L1_Mus2 LINE L1 5304 5585 -298 4 1525 7493 67 15 3 chr6 123323063 123324046 -26192991 + L1Md_F2 LINE L1 5587 6581 -1 4 1525 10028 108 8 20 chr6 123324046 123325014 -26192023 + L1_Mus2 LINE L1 5586 6566 0 4 1525 838 9 9 19 chr6 123325277 123325385 -26191652 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 4 1525 423 0 0 0 chr6 123325806 123325853 -26191184 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1525 301 331 12 24 chr6 123325936 123326106 -26190931 - Lx9 LINE L1 -1670 5974 5807 4 1525 446 289 77 6 chr6 123326114 123326295 -26190742 - L1_Rod LINE L1 -3815 2032 1839 4 1525 863 283 96 17 chr6 123326317 123326585 -26190452 - Lx4A LINE L1 -26 7434 7147 4 1525 561 42 0 0 chr6 123326585 123326657 -26190380 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1525 863 283 96 17 chr6 123326657 123326794 -26190243 - Lx4A LINE L1 -314 7146 6998 4 1525 6336 187 92 13 chr6 123326831 123328809 -26188228 - Lx4A LINE L1 -50 7008 4814 4 1525 2133 146 62 13 chr6 123328809 123329199 -26187838 - RLTR9E LTR ERVK 0 409 1 4 1525 6125 181 131 18 chr6 123329199 123329825 -26187212 - Lx4A LINE L1 -1064 4813 4168 4 1525 264 220 0 17 chr6 123329973 123330033 -26187004 + B1_Mus1 SINE Alu 20 78 -70 4 1525 180 143 0 0 chr6 123330095 123330137 -26186900 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1525 564 15 0 0 chr6 123330139 123330204 -26186833 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1525 427 300 86 37 chr6 123330270 123330758 -26186279 + L1_Mur3 LINE L1 3832 4343 -1537 4 1525 348 24 0 0 chr6 123331010 123331051 -26185986 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 4 1525 400 287 19 6 chr6 123331053 123331235 -26185802 + L1_Mur3 LINE L1 4429 4640 -1500 4 1525 6444 69 4 1 chr6 123331949 123332793 -26184244 + L1Md_F2 LINE L1 5737 6582 0 4 1525 835 306 89 25 chr6 123336555 123337027 -26180010 - Lx8 LINE L1 0 7473 6972 4 1525 469 338 70 21 chr6 123337548 123337676 -26179361 + B1F2 SINE Alu 1 138 -11 4 1525 618 82 0 0 chr6 123337676 123337761 -26179276 + (GGAAA)n Simple_repeat Simple_repeat 3 87 0 4 1525 469 338 70 21 chr6 123337761 123337774 -26179263 + B1F2 SINE Alu 139 149 0 4 1525 296 357 0 35 chr6 123337779 123337895 -26179142 + polypurine Low_complexity Low_complexity 1 112 0 4 1525 1275 79 0 0 chr6 123337900 123338077 -26178960 + (GGGAA)n Simple_repeat Simple_repeat 4 180 0 4 1525 571 294 75 59 chr6 123338196 123338503 -26178534 - RLTR23 LTR ERV1 -37 393 82 4 1525 372 198 45 214 chr6 123338500 123338654 -26178383 - RLTR23 LTR ERV1 -295 135 8 4 1526 894 261 35 56 chr6 123338799 123339083 -26177954 - RLTR19-int LTR ERVK -1763 4374 4097 4 1526 509 320 22 12 chr6 123339098 123339375 -26177662 - MuRRS4-int LTR ERV1 -2574 2489 2302 4 1526 3134 48 10 2 chr6 123339840 123340233 -26176804 + MTA_Mm LTR MaLR 1 396 0 4 1526 2891 217 64 60 chr6 123340647 123340798 -26176239 + RLTR22_Mur LTR ERVK 1 180 -1668 4 1526 296 64 21 0 chr6 123340798 123340845 -26176192 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1526 2891 217 64 60 chr6 123340845 123341547 -26175490 + RLTR22_Mur LTR ERVK 181 858 -990 4 1526 304 275 14 0 chr6 123342166 123342235 -26174802 - RLTR23 LTR ERV1 0 430 361 4 1526 415 250 0 11 chr6 123342543 123342636 -26174401 - RLTR23 LTR ERV1 -331 99 8 4 1526 517 259 76 0 chr6 123343603 123343734 -26173303 - B1_Mus1 SINE Alu -6 142 2 4 1526 389 81 16 0 chr6 123344136 123344198 -26172839 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 4 1526 202 258 0 43 chr6 123344389 123344482 -26172555 + A-rich Low_complexity Low_complexity 2 90 0 4 1526 541 178 28 0 chr6 123344765 123344907 -26172130 + RMER6C LTR ERVK 6 195 -561 4 1526 5542 150 51 13 chr6 123344929 123345898 -26171139 + Lx LINE L1 5587 6591 -63 4 1526 622 205 7 13 chr6 123345908 123346061 -26170976 + RMER6C LTR ERVK 161 312 -378 4 1526 634 215 87 23 chr6 123346068 123346298 -26170739 - RMER12 LTR ERVK 0 1322 1128 4 1526 4270 275 84 12 chr6 123346838 123349663 -26167374 + Lx5 LINE L1 4111 7456 -4 4 1526 22 35 0 0 chr6 123349751 123349780 -26167257 + AT_rich Low_complexity Low_complexity 1 29 0 4 1526 224 59 0 29 chr6 123349788 123349823 -26167214 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 4 1526 422 267 19 0 chr6 123349866 123349971 -26167066 + Lx7 LINE L1 7193 7299 -397 4 1526 343 96 27 14 chr6 123350097 123350171 -26166866 + (TTTTTG)n Simple_repeat Simple_repeat 2 76 0 4 1526 438 330 124 14 chr6 123350347 123350565 -26166472 + Lx8 LINE L1 7041 7282 -191 4 1526 405 0 0 0 chr6 123350718 123350763 -26166274 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1526 971 290 72 60 chr6 123350792 123351003 -26166034 + ORR1D2 LTR MaLR 6 215 -155 4 1526 1610 47 0 0 chr6 123351003 123351196 -26165841 - B2_Mm1a SINE B2 0 193 1 4 1526 971 290 72 60 chr6 123351196 123351333 -26165704 + ORR1D2 LTR MaLR 216 358 -12 4 1526 434 261 17 0 chr6 123351342 123351461 -26165576 + L1M2 LINE L1 5490 5610 -690 4 1526 252 0 0 0 chr6 123351461 123351489 -26165548 + (CAAAAA)n Simple_repeat Simple_repeat 6 33 0 4 1526 1065 254 90 12 chr6 123351623 123351966 -26165071 + ORR1D2 LTR MaLR 1 370 0 4 1526 432 153 0 0 chr6 123352252 123352337 -26164700 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1526 1036 267 75 9 chr6 123352409 123352756 -26164281 - ORR1D2 LTR MaLR 0 370 1 4 1526 473 254 78 16 chr6 123352922 123353114 -26163923 + L1M3 LINE L1 4412 4615 -1528 4 1526 555 297 158 21 chr6 123353148 123353780 -26163257 + L1M3 LINE L1 4679 5397 -743 4 1526 246 182 73 0 chr6 123354119 123354174 -26162863 + L1M3 LINE L1 5483 5541 -627 4 1526 892 129 0 0 chr6 123356988 123357128 -26159909 - L1_Mus2 LINE L1 0 6566 6427 4 1526 631 51 0 0 chr6 123357129 123357207 -26159830 + L1_Mus2 LINE L1 6356 6433 -133 4 1526 494 70 0 14 chr6 123357815 123357887 -26159150 + (TATG)n Simple_repeat Simple_repeat 2 72 0 4 1526 539 369 31 15 chr6 123357921 123358180 -26158857 + B4A SINE B4 28 290 -2 4 1526 321 135 0 0 chr6 123358247 123358299 -26158738 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1526 573 15 0 0 chr6 123358299 123358365 -26158672 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 1526 241 229 0 40 chr6 123358579 123358629 -26158408 + B2_Mm1t SINE B2 52 99 -94 4 1526 560 313 126 53 chr6 123358966 123359759 -26157278 + L1M2 LINE L1 4155 4991 -1152 4 1526 285 284 2 138 chr6 123359942 123359988 -26157049 + B4A SINE B4 49 81 -211 4 1526 364 350 58 8 chr6 123359988 123360109 -26156928 + B1_Mur2 SINE Alu 2 128 -21 4 1526 2146 94 9 45 chr6 123360111 123360445 -26156592 + RLTRETN_Mm LTR ERVK 1 322 0 4 1526 34192 80 12 22 chr6 123360445 123365338 -26151699 + MMETn-int LTR ERVK 1 4844 0 4 1526 2201 84 3 48 chr6 123365338 123365675 -26151362 + RLTRETN_Mm LTR ERVK 1 322 0 4 1526 720 214 0 28 chr6 123367023 123367164 -26149873 - B1_Mur1 SINE Alu -6 143 11 4 1526 386 338 77 5 chr6 123367503 123367711 -26149326 + Lx8 LINE L1 7152 7374 -99 4 1526 23 33 0 0 chr6 123367793 123367823 -26149214 + AT_rich Low_complexity Low_complexity 1 30 0 4 1526 288 77 0 0 chr6 123368907 123368946 -26148091 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 4 1526 2020 158 14 3 chr6 123369367 123369728 -26147309 - Lx5 LINE L1 -1099 5951 5587 4 1526 2615 234 38 37 chr6 123369741 123370530 -26146507 - L1_Mur2 LINE L1 -3137 2740 1951 4 1526 765 187 22 0 chr6 123370563 123370702 -26146335 - B1_Mus1 SINE Alu -5 143 2 4 1526 680 284 66 66 chr6 123370797 123371223 -26145814 + L1VL4 LINE L1 208 633 -5669 4 1526 1790 175 31 12 chr6 123371224 123371548 -26145489 - ETnERV2-int LTR ERVK -433 6973 6644 4 1526 327 245 84 96 chr6 123371563 123371730 -26145307 - ETnERV2-int LTR ERVK -589 6655 6491 4 1526 1050 348 18 23 chr6 123371784 123372346 -26144691 - RNERVK23-int LTR ERVK -413 7804 7246 4 1526 753 338 10 10 chr6 123372551 123372856 -26144181 - ETnERV2-int LTR ERVK -5607 1637 1333 4 1526 317 192 40 40 chr6 123373273 123373349 -26143688 - RLTR6-int LTR ERV1 -1547 6231 6156 4 1526 1413 291 32 36 chr6 123373845 123374434 -26142603 - RNERVK23-int LTR ERVK -2510 5707 5121 4 1526 833 0 0 10 chr6 123374690 123374788 -26142249 + (TTC)n Simple_repeat Simple_repeat 2 98 0 5 1526 1433 33 0 11 chr6 123374793 123374977 -26142060 - L1Md_F2 LINE L1 -12 6570 6389 5 1526 221 259 55 18 chr6 123375475 123375530 -26141507 - ID4_ SINE ID -2 81 25 5 1526 412 276 19 9 chr6 123375736 123375842 -26141195 + RLTR23 LTR ERV1 6 112 -318 5 1526 408 302 170 59 chr6 123375913 123376219 -26140818 + RLTR23 LTR ERV1 91 430 0 5 1526 1858 202 68 56 chr6 123376782 123377358 -26139679 - RLTR22_Mur LTR ERVK -922 926 344 5 1526 32154 82 3 6 chr6 123377362 123382553 -26134484 - L1Md_F2 LINE L1 -1 6581 1408 5 1526 35385 69 3 2 chr6 123382545 123388716 -26128321 - L1Md_F2 LINE L1 -1 6581 409 5 1526 1033 235 115 20 chr6 123388755 123388901 -26128136 - RLTR22_Mur LTR ERVK -1522 326 171 5 1526 459 95 0 0 chr6 123388901 123388975 -26128062 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1526 1033 235 115 20 chr6 123388975 123389123 -26127914 - RLTR22_Mur LTR ERVK -1678 170 5 5 1526 3282 43 2 2 chr6 123389539 123389935 -26127102 - MTA_Mm LTR MaLR 0 396 1 5 1526 251 276 13 26 chr6 123390026 123390104 -26126933 + MuRRS4-int LTR ERV1 1409 1485 -6293 5 1526 500 319 16 5 chr6 123390414 123390600 -26126437 + MuRRS4-int LTR ERV1 2302 2489 -2574 5 1526 924 269 36 54 chr6 123390690 123390969 -26126068 + RLTR19-int LTR ERVK 4097 4370 -1767 5 1526 435 241 69 203 chr6 123391114 123391562 -26125475 + RLTR23 LTR ERV1 6 393 -37 5 1526 321 235 0 0 chr6 123391686 123391771 -26125266 + CT-rich Low_complexity Low_complexity 1 85 0 5 1526 453 248 96 17 chr6 123391775 123391890 -26125147 - B1F2 SINE Alu 0 149 26 5 1526 858 323 56 29 chr6 123392425 123392787 -26124250 + Lx8 LINE L1 6976 7356 -117 5 1526 2419 125 0 50 chr6 123392787 123393165 -26123872 + RLTR10D LTR ERVK 1 359 0 5 1526 858 323 56 29 chr6 123393165 123393287 -26123750 + Lx8 LINE L1 7357 7473 0 5 1526 5038 9 2 0 chr6 123397433 123398007 -26119030 + L1Md_T LINE L1 5012 5586 -297 5 1526 8001 45 9 0 chr6 123398007 123398993 -26118044 + L1Md_T LINE L1 5587 6581 -1 5 1526 33 85 0 0 chr6 123399101 123399183 -26117854 + AT_rich Low_complexity Low_complexity 1 82 0 5 1526 313 317 8 0 chr6 123399196 123399344 -26117693 - L1M2 LINE L1 -1523 4617 4448 5 1526 221 98 24 0 chr6 123399464 123399505 -26117532 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 5 1526 690 281 73 63 chr6 123399644 123400153 -26116884 - L1M2 LINE L1 -1765 4378 3865 5 1526 275 122 0 20 chr6 123400236 123400286 -26116751 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 5 1526 222 288 37 24 chr6 123400315 123400397 -26116640 - PB1D10 SINE Alu -16 101 19 5 1526 5280 155 270 4 chr6 123400401 123401146 -26115891 + Lx4A LINE L1 4307 5321 -556 5 1526 694 37 9 18 chr6 123401146 123401255 -26115782 - L1Md_F2 LINE L1 0 6582 6475 5 1526 6739 180 119 10 chr6 123401255 123402829 -26114208 + Lx4A LINE L1 5322 7007 -51 5 1526 1318 276 38 35 chr6 123402877 123403302 -26113735 + Lx6 LINE L1 7009 7434 -26 5 1526 390 246 146 27 chr6 123403314 123403485 -26113552 + L1_Rod LINE L1 1821 2032 -3815 5 1526 249 306 41 68 chr6 123403493 123403745 -26113292 + Lx9 LINE L1 5806 6051 -1593 5 1526 234 0 0 0 chr6 123403745 123403771 -26113266 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1526 249 306 41 68 chr6 123403771 123403784 -26113253 + Lx9 LINE L1 6052 6064 -1580 5 1526 1016 76 14 0 chr6 123404267 123404411 -26112626 + B1_Mus1 SINE Alu 2 147 -1 5 1526 9150 149 11 6 chr6 123404466 123406069 -26110968 - L1_Mur2 LINE L1 -463 5414 3804 5 1526 26 30 0 0 chr6 123406069 123406102 -26110935 + AT_rich Low_complexity Low_complexity 1 33 0 5 1526 192 200 0 0 chr6 123406272 123406312 -26110725 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 5 1526 2278 139 8 2 chr6 123406825 123407220 -26109817 - L1_Mur2 LINE L1 -1902 3975 3579 5 1526 1889 118 50 16 chr6 123407220 123407509 -26109528 + RMER17A LTR ERVK 1 301 -450 5 1526 853 107 7 7 chr6 123407509 123407650 -26109387 + (TTC)n Simple_repeat Simple_repeat 2 142 0 5 1526 1889 124 26 36 chr6 123407650 123407803 -26109234 + RMER17A LTR ERVK 302 546 -205 5 1526 8253 52 12 0 chr6 123407807 123408877 -26108160 + L1_Mm LINE L1 1803 2885 -2998 5 1526 2074 193 64 30 chr6 123408917 123409134 -26107903 - RMER17D2 LTR ERVK -116 693 376 5 1526 509 87 22 0 chr6 123409134 123409226 -26107811 + (CAGAGA)n Simple_repeat Simple_repeat 3 96 0 5 1526 2074 129 20 43 chr6 123409226 123409269 -26107768 - RMER17D2 LTR ERVK -434 375 334 5 1526 798 11 0 0 chr6 123409269 123409360 -26107677 + (GGAGA)n Simple_repeat Simple_repeat 1 91 0 5 1526 2074 129 20 43 chr6 123409360 123409700 -26107337 - RMER17D2 LTR ERVK -476 333 1 5 1526 8526 59 5 0 chr6 123409856 123410975 -26106062 - L1_Mm LINE L1 -2428 3455 2331 5 1526 1525 296 38 41 chr6 123410969 123411977 -26105060 - L1_Mur3 LINE L1 -2183 3960 2937 5 1526 754 272 48 0 chr6 123411977 123412183 -26104854 - B3 SINE B2 0 216 1 5 1526 1192 318 62 39 chr6 123412183 123412311 -26104726 - L1_Mur3 LINE L1 -3207 2936 2798 5 1526 1505 158 55 7 chr6 123412569 123412844 -26104193 - Lx2 LINE L1 -7 7001 6714 5 1526 3260 120 11 37 chr6 123413211 123413775 -26103262 - RLTR22_Mur LTR ERVK -997 851 303 5 1526 21648 186 26 7 chr6 123413775 123419163 -26097874 - Lx2 LINE L1 -955 6042 549 5 1526 600 172 156 19 chr6 123419163 123419317 -26097720 - RLTR22_Mur LTR ERVK -1673 175 1 5 1526 1607 214 84 66 chr6 123419317 123419503 -26097534 - RLTR12B LTR ERVK -81 447 266 5 1526 772 38 0 19 chr6 123419503 123419609 -26097428 + (TC)n Simple_repeat Simple_repeat 1 104 0 5 1526 1607 214 84 66 chr6 123419609 123419861 -26097176 - RLTR12B LTR ERVK -263 265 1 5 1526 1833 316 56 35 chr6 123419877 123420468 -26096569 - L1_Mur3 LINE L1 -3113 2767 2163 5 1526 477 0 0 0 chr6 123420468 123420521 -26096516 + (TC)n Simple_repeat Simple_repeat 2 54 0 5 1526 243 0 0 0 chr6 123420521 123420547 -26096490 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1526 1833 316 56 35 chr6 123420547 123421340 -26095697 - L1_Mur3 LINE L1 -3718 2162 1355 5 1526 3193 88 46 19 chr6 123421355 123421832 -26095205 - L1_Mus1 LINE L1 0 6567 6078 5 1526 3674 84 29 7 chr6 123421832 123422454 -26094583 - L1_Mus1 LINE L1 -663 5904 5291 5 1526 3642 147 129 8 chr6 123422550 123422878 -26094159 + RMER17D2 LTR ERVK 1 372 -437 5 1526 721 73 9 9 chr6 123422878 123422988 -26094049 + (TCTCC)n Simple_repeat Simple_repeat 2 111 0 5 1526 3642 147 129 8 chr6 123422988 123423381 -26093656 + RMER17D2 LTR ERVK 373 808 -1 5 1526 418 241 0 41 chr6 123423437 123423558 -26093479 - Lx2B LINE L1 -6 6994 6879 5 1526 234 275 41 62 chr6 123424526 123424623 -26092414 - L1_Rod LINE L1 -2832 3015 2921 5 1526 273 228 78 17 chr6 123424845 123424961 -26092076 + L1M4 LINE L1 4151 4273 -1873 5 1526 31 0 0 0 chr6 123425181 123425212 -26091825 + AT_rich Low_complexity Low_complexity 1 31 0 5 1526 204 381 77 12 chr6 123425960 123426130 -26090907 + MIRb SINE MIR 65 245 -23 5 1526 386 337 0 0 chr6 123426265 123426366 -26090671 + PB1 SINE Alu 3 103 -24 5 1526 610 207 89 0 chr6 123426441 123426576 -26090461 - B1_Mus1 SINE Alu 0 148 2 5 1526 23603 99 4 10 chr6 123426614 123429477 -26087560 + L1_Mus2 LINE L1 2436 5303 -580 5 1526 4426 65 2 14 chr6 123429477 123430069 -26086968 + L1Md_F2 LINE L1 5997 6581 -1 5 1526 23603 99 4 10 chr6 123430069 123430380 -26086657 + L1_Mus2 LINE L1 5304 5585 -298 5 1526 7595 61 15 3 chr6 123430380 123431363 -26085674 + L1Md_F2 LINE L1 5587 6581 -1 5 1526 23603 113 14 5 chr6 123431363 123432323 -26084714 + L1_Mus2 LINE L1 5586 6566 0 5 1526 423 0 0 0 chr6 123432582 123432629 -26084408 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 5 1526 252 0 0 0 chr6 123433050 123433078 -26083959 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1526 441 0 0 0 chr6 123433078 123433126 -26083911 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1526 373 313 24 24 chr6 123433210 123433380 -26083657 - Lx9 LINE L1 -1670 5974 5805 5 1526 530 264 88 17 chr6 123433385 123433566 -26083471 - L1_Rod LINE L1 -3815 2032 1839 5 1526 1034 284 70 47 chr6 123433588 123434016 -26083021 - Lx6 LINE L1 -26 7434 6997 5 1526 6510 192 89 19 chr6 123434045 123436041 -26080996 - Lx4A LINE L1 -42 7016 4812 5 1526 2091 151 62 13 chr6 123436041 123436431 -26080606 - RLTR9E LTR ERVK 0 409 1 5 1526 6491 177 142 28 chr6 123436431 123437052 -26079985 - Lx4A LINE L1 -1066 4811 4173 5 1526 21 0 0 0 chr6 123437119 123437140 -26079897 + AT_rich Low_complexity Low_complexity 1 21 0 5 1526 251 237 0 17 chr6 123437207 123437267 -26079770 + B1_Mus1 SINE Alu 20 78 -70 5 1526 369 0 0 0 chr6 123437331 123437372 -26079665 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1526 669 63 0 0 chr6 123437372 123437466 -26079571 + (TG)n Simple_repeat Simple_repeat 2 96 0 5 1526 573 294 92 43 chr6 123437532 123438092 -26078945 + L1_Mur3 LINE L1 3832 4422 -1425 5 1526 189 0 0 0 chr6 123438275 123438296 -26078741 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 5 1526 425 293 19 6 chr6 123438298 123438480 -26078557 + L1_Mur3 LINE L1 4429 4640 -1500 5 1526 6557 62 4 1 chr6 123439195 123440039 -26076998 + L1Md_F2 LINE L1 5737 6582 0 5 1526 23 0 0 0 chr6 123443547 123443570 -26073467 + AT_rich Low_complexity Low_complexity 1 23 0 5 1526 809 314 98 24 chr6 123443806 123444273 -26072764 - Lx8 LINE L1 0 7473 6972 5 1526 438 344 78 0 chr6 123444794 123444922 -26072115 + B1F2 SINE Alu 1 138 -11 5 1526 950 40 16 0 chr6 123444922 123445048 -26071989 + (GGAAA)n Simple_repeat Simple_repeat 3 130 0 5 1526 349 397 11 6 chr6 123445056 123445199 -26071838 + polypurine Low_complexity Low_complexity 4 147 0 5 1526 1101 57 0 0 chr6 123445199 123445340 -26071697 + (GGGAA)n Simple_repeat Simple_repeat 5 145 0 5 1526 349 397 11 6 chr6 123445340 123445371 -26071666 + polypurine Low_complexity Low_complexity 148 178 0 5 1526 716 286 72 108 chr6 123445460 123445860 -26071177 - RLTR23 LTR ERV1 -37 393 8 5 1526 845 259 39 61 chr6 123446006 123446286 -26070751 - RLTR19-int LTR ERVK -1767 4370 4097 5 1526 328 310 78 45 chr6 123446349 123446528 -26070509 - MMERGLN-int LTR ERV1 -3738 3818 3634 5 1526 38775 33 3 6 chr6 123446567 123452629 -26064408 - L1Md_T LINE L1 -1 6581 544 5 1526 184 94 0 111 chr6 123452648 123452684 -26064353 - L2 LINE L2 -1084 2335 2304 5 1526 3209 53 5 0 chr6 123453142 123453536 -26063501 + MTA_Mm LTR MaLR 1 396 0 5 1526 2824 211 73 62 chr6 123453942 123454093 -26062944 + RLTR22_Mur LTR ERVK 1 180 -1668 5 1526 369 86 0 0 chr6 123454093 123454151 -26062886 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1526 2824 211 73 62 chr6 123454151 123454848 -26062189 + RLTR22_Mur LTR ERVK 181 858 -990 5 1526 287 261 14 0 chr6 123455466 123455535 -26061502 - RLTR23 LTR ERV1 0 430 361 5 1526 430 237 0 58 chr6 123455840 123455943 -26061094 - RLTR23 LTR ERV1 -326 104 8 5 1526 185 47 44 44 chr6 123456641 123456686 -26060351 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 5 1526 1429 295 61 51 chr6 123457057 123458116 -26058921 + RMER1B Other Other 2 1066 0 5 1526 531 252 76 0 chr6 123458966 123459097 -26057940 - B1_Mus1 SINE Alu -6 142 2 5 1526 371 106 15 0 chr6 123459499 123459565 -26057472 + (TTTC)n Simple_repeat Simple_repeat 4 70 0 5 1526 223 224 0 96 chr6 123459756 123459850 -26057187 + A-rich Low_complexity Low_complexity 2 86 0 5 1526 566 171 28 0 chr6 123460132 123460274 -26056763 + RMER6C LTR ERVK 6 195 -561 5 1526 5257 155 66 11 chr6 123460296 123461249 -26055788 + Lx LINE L1 5587 6591 -63 6 1526 637 199 7 13 chr6 123461255 123461408 -26055629 + RMER6C LTR ERVK 161 312 -378 5 1526 631 222 96 22 chr6 123461415 123461643 -26055394 - RMER12 LTR ERVK 0 1322 1128 6 1526 4866 268 101 16 chr6 123462186 123465004 -26052033 + Lx5 LINE L1 4103 7456 -4 6 1526 231 262 0 0 chr6 123465011 123465053 -26051984 + Lx7 LINE L1 6947 6988 -708 6 1526 22 35 0 0 chr6 123465092 123465121 -26051916 + AT_rich Low_complexity Low_complexity 1 29 0 6 1526 260 53 0 26 chr6 123465129 123465168 -26051869 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 6 1526 377 286 19 0 chr6 123465211 123465316 -26051721 + Lx7 LINE L1 7193 7299 -397 6 1526 318 72 0 68 chr6 123465442 123465516 -26051521 + (TTTTTG)n Simple_repeat Simple_repeat 2 70 0 6 1526 438 330 124 14 chr6 123465692 123465910 -26051127 + Lx8 LINE L1 7041 7282 -191 6 1526 405 0 0 0 chr6 123466063 123466108 -26050929 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1526 971 290 72 60 chr6 123466137 123466348 -26050689 + ORR1D2 LTR MaLR 6 215 -155 6 1526 1610 47 0 0 chr6 123466348 123466541 -26050496 - B2_Mm1a SINE B2 0 193 1 6 1526 971 290 72 60 chr6 123466541 123466678 -26050359 + ORR1D2 LTR MaLR 216 358 -12 6 1526 434 261 17 0 chr6 123466687 123466806 -26050231 + L1M2 LINE L1 5490 5610 -690 6 1526 252 0 0 0 chr6 123466806 123466834 -26050203 + (CAAAAA)n Simple_repeat Simple_repeat 6 33 0 6 1526 1065 254 90 12 chr6 123466968 123467311 -26049726 + ORR1D2 LTR MaLR 1 370 0 6 1526 432 153 0 0 chr6 123467597 123467682 -26049355 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 1526 1036 267 75 9 chr6 123467754 123468101 -26048936 - ORR1D2 LTR MaLR 0 370 1 6 1526 473 254 78 16 chr6 123468267 123468459 -26048578 + L1M3 LINE L1 4412 4615 -1528 6 1526 555 297 158 21 chr6 123468493 123469125 -26047912 + L1M3 LINE L1 4679 5397 -743 6 1526 246 182 73 0 chr6 123469464 123469519 -26047518 + L1M3 LINE L1 5483 5541 -627 6 1527 892 129 0 0 chr6 123472333 123472473 -26044564 - L1_Mus2 LINE L1 0 6566 6427 6 1527 631 51 0 0 chr6 123472474 123472552 -26044485 + L1_Mus2 LINE L1 6356 6433 -133 6 1527 494 70 0 14 chr6 123473160 123473232 -26043805 + (TATG)n Simple_repeat Simple_repeat 2 72 0 6 1527 539 369 31 15 chr6 123473266 123473525 -26043512 + B4A SINE B4 28 290 -2 6 1527 321 135 0 0 chr6 123473592 123473644 -26043393 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1527 573 15 0 0 chr6 123473644 123473710 -26043327 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 1527 241 229 0 40 chr6 123473924 123473974 -26043063 + B2_Mm1t SINE B2 52 99 -94 6 1527 560 313 126 53 chr6 123474311 123475104 -26041933 + L1M2 LINE L1 4155 4991 -1152 6 1527 285 284 2 138 chr6 123475287 123475333 -26041704 + B4A SINE B4 49 81 -211 6 1527 364 350 58 8 chr6 123475333 123475454 -26041583 + B1_Mur2 SINE Alu 2 128 -21 6 1527 2146 94 9 45 chr6 123475456 123475790 -26041247 + RLTRETN_Mm LTR ERVK 1 322 0 6 1527 34192 80 12 22 chr6 123475790 123480683 -26036354 + MMETn-int LTR ERVK 1 4844 0 6 1527 2201 84 3 48 chr6 123480683 123481020 -26036017 + RLTRETN_Mm LTR ERVK 1 322 0 6 1527 720 214 0 28 chr6 123482368 123482509 -26034528 - B1_Mur1 SINE Alu -6 143 11 6 1527 386 338 77 5 chr6 123482848 123483056 -26033981 + Lx8 LINE L1 7152 7374 -99 6 1527 23 33 0 0 chr6 123483138 123483168 -26033869 + AT_rich Low_complexity Low_complexity 1 30 0 6 1527 288 77 0 0 chr6 123484252 123484291 -26032746 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 6 1527 2020 158 14 3 chr6 123484712 123485073 -26031964 - Lx5 LINE L1 -1099 5951 5587 6 1527 2615 234 38 37 chr6 123485086 123485875 -26031162 - L1_Mur2 LINE L1 -3137 2740 1951 6 1527 765 187 22 0 chr6 123485908 123486047 -26030990 - B1_Mus1 SINE Alu -5 143 2 6 1527 680 284 66 66 chr6 123486142 123486568 -26030469 + L1VL4 LINE L1 208 633 -5669 6 1527 1790 175 31 12 chr6 123486569 123486893 -26030144 - ETnERV2-int LTR ERVK -433 6973 6644 6 1527 327 245 84 96 chr6 123486908 123487075 -26029962 - ETnERV2-int LTR ERVK -589 6655 6491 6 1527 1050 348 18 23 chr6 123487129 123487691 -26029346 - RNERVK23-int LTR ERVK -413 7804 7246 6 1527 753 338 10 10 chr6 123487896 123488201 -26028836 - ETnERV2-int LTR ERVK -5607 1637 1333 6 1527 317 192 40 40 chr6 123488618 123488694 -26028343 - RLTR6-int LTR ERV1 -1547 6231 6156 6 1527 1413 291 32 36 chr6 123489190 123489779 -26027258 - RNERVK23-int LTR ERVK -2510 5707 5121 6 1527 833 0 0 10 chr6 123490035 123490133 -26026904 + (TTC)n Simple_repeat Simple_repeat 2 98 0 6 1527 1433 33 0 11 chr6 123490138 123490322 -26026715 - L1Md_F2 LINE L1 -12 6570 6389 6 1527 221 259 55 18 chr6 123490820 123490875 -26026162 - ID4_ SINE ID -2 81 25 6 1527 412 276 19 9 chr6 123491081 123491187 -26025850 + RLTR23 LTR ERV1 6 112 -318 6 1527 408 302 170 59 chr6 123491258 123491564 -26025473 + RLTR23 LTR ERV1 91 430 0 6 1527 1858 202 68 56 chr6 123492127 123492703 -26024334 - RLTR22_Mur LTR ERVK -922 926 344 6 1527 32201 82 2 6 chr6 123492707 123497900 -26019137 - L1Md_F2 LINE L1 -1 6581 1408 6 1527 11040 61 2 1 chr6 123497892 123500000 -26017037 - L1Md_F2 LINE L1 -1 6581 4472 6 1527 24283 74 3 3 chr6 123500000 123504063 -26012974 - L1Md_F LINE L1 -1412 4471 409 1 1527 1033 235 115 20 chr6 123504102 123504248 -26012789 - RLTR22_Mur LTR ERVK -1522 326 171 2 1527 459 95 0 0 chr6 123504248 123504322 -26012715 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1527 1033 235 115 20 chr6 123504322 123504470 -26012567 - RLTR22_Mur LTR ERVK -1678 170 5 2 1527 3282 43 2 2 chr6 123504886 123505282 -26011755 - MTA_Mm LTR MaLR 0 396 1 4 1527 251 276 13 26 chr6 123505373 123505451 -26011586 + MuRRS4-int LTR ERV1 1409 1485 -6293 5 1527 500 319 16 5 chr6 123505761 123505947 -26011090 + MuRRS4-int LTR ERV1 2302 2489 -2574 5 1527 924 269 36 54 chr6 123506037 123506316 -26010721 + RLTR19-int LTR ERVK 4097 4370 -1767 6 1527 435 241 69 203 chr6 123506461 123506909 -26010128 + RLTR23 LTR ERV1 6 393 -37 7 1527 321 235 0 0 chr6 123507033 123507118 -26009919 + CT-rich Low_complexity Low_complexity 1 85 0 8 1527 453 248 96 17 chr6 123507122 123507237 -26009800 - B1F2 SINE Alu 0 149 26 9 1527 858 323 56 29 chr6 123507772 123508134 -26008903 + Lx8 LINE L1 6976 7356 -117 1 1527 2419 125 0 50 chr6 123508134 123508512 -26008525 + RLTR10D LTR ERVK 1 359 0 1 1527 858 323 56 29 chr6 123508512 123508634 -26008403 + Lx8 LINE L1 7357 7473 0 1 1527 5038 9 2 0 chr6 123512780 123513354 -26003683 + L1Md_T LINE L1 5012 5586 -297 1 1527 8001 45 9 0 chr6 123513354 123514340 -26002697 + L1Md_T LINE L1 5587 6581 -1 1 1527 33 85 0 0 chr6 123514448 123514530 -26002507 + AT_rich Low_complexity Low_complexity 1 82 0 1 1527 313 317 8 0 chr6 123514543 123514691 -26002346 - L1M2 LINE L1 -1523 4617 4448 1 1527 221 98 24 0 chr6 123514811 123514852 -26002185 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 1 1527 690 281 73 63 chr6 123514991 123515500 -26001537 - L1M2 LINE L1 -1765 4378 3865 1 1527 275 122 0 20 chr6 123515583 123515633 -26001404 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 1 1527 222 288 37 24 chr6 123515662 123515744 -26001293 - PB1D10 SINE Alu -16 101 19 1 1527 5280 155 270 4 chr6 123515748 123516493 -26000544 + Lx4A LINE L1 4307 5321 -556 1 1527 694 37 9 18 chr6 123516493 123516602 -26000435 - L1Md_F2 LINE L1 0 6582 6475 1 1527 6739 180 119 10 chr6 123516602 123518176 -25998861 + Lx4A LINE L1 5322 7007 -51 1 1527 1318 276 38 35 chr6 123518224 123518649 -25998388 + Lx6 LINE L1 7009 7434 -26 2 1527 390 246 146 27 chr6 123518661 123518832 -25998205 + L1_Rod LINE L1 1821 2032 -3815 2 1527 249 306 41 68 chr6 123518840 123519092 -25997945 + Lx9 LINE L1 5806 6051 -1593 2 1527 234 0 0 0 chr6 123519092 123519118 -25997919 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1527 249 306 41 68 chr6 123519118 123519131 -25997906 + Lx9 LINE L1 6052 6064 -1580 2 1527 1016 76 14 0 chr6 123519614 123519758 -25997279 + B1_Mus1 SINE Alu 2 147 -1 2 1527 9150 149 11 6 chr6 123519813 123521416 -25995621 - L1_Mur2 LINE L1 -463 5414 3804 2 1527 26 30 0 0 chr6 123521416 123521449 -25995588 + AT_rich Low_complexity Low_complexity 1 33 0 2 1527 192 200 0 0 chr6 123521619 123521659 -25995378 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 2 1527 2278 139 8 2 chr6 123522172 123522567 -25994470 - L1_Mur2 LINE L1 -1902 3975 3579 2 1527 1889 118 50 16 chr6 123522567 123522856 -25994181 + RMER17A LTR ERVK 1 301 -450 2 1527 853 107 7 7 chr6 123522856 123522997 -25994040 + (TTC)n Simple_repeat Simple_repeat 2 142 0 3 1527 1889 124 26 36 chr6 123522997 123523150 -25993887 + RMER17A LTR ERVK 302 546 -205 2 1527 8253 52 12 0 chr6 123523154 123524224 -25992813 + L1_Mm LINE L1 1803 2885 -2998 3 1527 3481 137 29 62 chr6 123524264 123524639 -25992398 - RMER17D2 LTR ERVK -116 693 326 3 1527 594 0 0 0 chr6 123524639 123524705 -25992332 + (GGAGA)n Simple_repeat Simple_repeat 1 66 0 3 1527 3481 137 29 62 chr6 123524705 123525045 -25991992 - RMER17D2 LTR ERVK -484 325 1 3 1527 8526 59 5 0 chr6 123525201 123526320 -25990717 - L1_Mm LINE L1 -2428 3455 2331 3 1527 1525 296 38 41 chr6 123526314 123527322 -25989715 - L1_Mur3 LINE L1 -2183 3960 2937 3 1527 754 272 48 0 chr6 123527322 123527528 -25989509 - B3 SINE B2 0 216 1 3 1527 1192 318 62 39 chr6 123527528 123527656 -25989381 - L1_Mur3 LINE L1 -3207 2936 2798 3 1527 1505 158 55 7 chr6 123527914 123528189 -25988848 - Lx2 LINE L1 -7 7001 6714 3 1527 3260 120 11 37 chr6 123528556 123529120 -25987917 - RLTR22_Mur LTR ERVK -997 851 303 3 1527 21648 186 26 7 chr6 123529120 123534508 -25982529 - Lx2 LINE L1 -955 6042 549 3 1527 600 172 156 19 chr6 123534508 123534662 -25982375 - RLTR22_Mur LTR ERVK -1673 175 1 3 1527 1607 214 84 66 chr6 123534662 123534848 -25982189 - RLTR12B LTR ERVK -81 447 266 4 1527 772 38 0 19 chr6 123534848 123534954 -25982083 + (TC)n Simple_repeat Simple_repeat 1 104 0 4 1527 1607 214 84 66 chr6 123534954 123535206 -25981831 - RLTR12B LTR ERVK -263 265 1 4 1527 1833 316 56 35 chr6 123535222 123535813 -25981224 - L1_Mur3 LINE L1 -3113 2767 2163 4 1527 513 0 0 0 chr6 123535813 123535870 -25981167 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1527 243 0 0 0 chr6 123535870 123535896 -25981141 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1527 1833 316 56 35 chr6 123535896 123536689 -25980348 - L1_Mur3 LINE L1 -3718 2162 1355 4 1527 3193 88 46 19 chr6 123536704 123537181 -25979856 - L1_Mus1 LINE L1 0 6567 6078 4 1527 3674 84 29 7 chr6 123537181 123537803 -25979234 - L1_Mus1 LINE L1 -663 5904 5291 4 1527 3642 147 129 8 chr6 123537899 123538227 -25978810 + RMER17D2 LTR ERVK 1 372 -437 4 1527 721 73 9 9 chr6 123538227 123538337 -25978700 + (TCTCC)n Simple_repeat Simple_repeat 2 111 0 4 1527 3642 147 129 8 chr6 123538337 123538730 -25978307 + RMER17D2 LTR ERVK 373 808 -1 4 1527 418 241 0 41 chr6 123538786 123538907 -25978130 - Lx2B LINE L1 -6 6994 6879 4 1527 234 275 41 62 chr6 123539875 123539972 -25977065 - L1_Rod LINE L1 -2832 3015 2921 4 1527 273 228 78 17 chr6 123540194 123540310 -25976727 + L1M4 LINE L1 4151 4273 -1873 5 1527 31 0 0 0 chr6 123540530 123540561 -25976476 + AT_rich Low_complexity Low_complexity 1 31 0 5 1527 204 381 77 12 chr6 123541309 123541479 -25975558 + MIRb SINE MIR 65 245 -23 5 1527 386 337 0 0 chr6 123541614 123541715 -25975322 + PB1 SINE Alu 3 103 -24 5 1527 610 207 89 0 chr6 123541790 123541925 -25975112 - B1_Mus1 SINE Alu 0 148 2 5 1527 23603 99 4 10 chr6 123541963 123544826 -25972211 + L1_Mus2 LINE L1 2436 5303 -580 5 1527 4426 65 2 14 chr6 123544826 123545418 -25971619 + L1Md_F2 LINE L1 5997 6581 -1 5 1527 23603 99 4 10 chr6 123545418 123545729 -25971308 + L1_Mus2 LINE L1 5304 5585 -298 5 1527 7595 61 15 3 chr6 123545729 123546712 -25970325 + L1Md_F2 LINE L1 5587 6581 -1 5 1527 23603 113 14 5 chr6 123546712 123547672 -25969365 + L1_Mus2 LINE L1 5586 6566 0 5 1527 423 0 0 0 chr6 123547931 123547978 -25969059 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 5 1527 252 0 0 0 chr6 123548399 123548427 -25968610 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1527 441 0 0 0 chr6 123548427 123548475 -25968562 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1527 373 313 24 24 chr6 123548559 123548729 -25968308 - Lx9 LINE L1 -1670 5974 5805 6 1527 530 264 88 17 chr6 123548734 123548915 -25968122 - L1_Rod LINE L1 -3815 2032 1839 6 1527 1034 284 70 47 chr6 123548937 123549365 -25967672 - Lx6 LINE L1 -26 7434 6997 6 1527 6510 192 89 22 chr6 123549394 123551390 -25965647 - Lx4A LINE L1 -42 7016 4812 6 1527 2091 151 62 13 chr6 123551390 123551780 -25965257 - RLTR9E LTR ERVK 0 409 1 6 1527 6411 177 142 34 chr6 123551780 123552092 -25964945 - Lx4A LINE L1 -1066 4811 4496 6 1527 3437 18 5 0 chr6 123552092 123552486 -25964551 - MTA_Mm LTR MaLR 0 396 1 6 1527 9065 35 4 1 chr6 123552486 123553581 -25963456 - MTA_Mm-int LTR MaLR 0 1098 1 6 1527 3417 20 5 0 chr6 123553581 123553975 -25963062 - MTA_Mm LTR MaLR 0 396 1 6 1527 6411 177 142 34 chr6 123553975 123554290 -25962747 - Lx4A LINE L1 -1382 4495 4175 6 1527 21 0 0 0 chr6 123554357 123554378 -25962659 + AT_rich Low_complexity Low_complexity 1 21 0 6 1527 251 237 0 17 chr6 123554445 123554505 -25962532 + B1_Mus1 SINE Alu 20 78 -70 6 1527 405 0 0 0 chr6 123554569 123554614 -25962423 + (TC)n Simple_repeat Simple_repeat 2 46 0 6 1527 741 58 0 0 chr6 123554614 123554716 -25962321 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 1527 573 294 92 43 chr6 123554782 123555342 -25961695 + L1_Mur3 LINE L1 3832 4422 -1425 7 1527 189 0 0 0 chr6 123555525 123555546 -25961491 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 7 1527 425 293 19 6 chr6 123555548 123555730 -25961307 + L1_Mur3 LINE L1 4429 4640 -1500 7 1527 6557 62 4 1 chr6 123556445 123557289 -25959748 + L1Md_F2 LINE L1 5737 6582 0 7 1527 23 0 0 0 chr6 123560797 123560820 -25956217 + AT_rich Low_complexity Low_complexity 1 23 0 7 1527 829 313 96 24 chr6 123561056 123561524 -25955513 - Lx8 LINE L1 0 7473 6972 7 1527 438 344 78 0 chr6 123562045 123562173 -25954864 + B1F2 SINE Alu 1 138 -11 7 1527 819 31 0 0 chr6 123562173 123562271 -25954766 + (GGAAA)n Simple_repeat Simple_repeat 3 100 0 7 1527 349 397 11 6 chr6 123562279 123562422 -25954615 + polypurine Low_complexity Low_complexity 4 147 0 7 1527 1101 57 0 0 chr6 123562422 123562563 -25954474 + (GGGAA)n Simple_repeat Simple_repeat 5 145 0 7 1527 349 397 11 6 chr6 123562563 123562594 -25954443 + polypurine Low_complexity Low_complexity 148 178 0 8 1527 716 286 72 108 chr6 123562683 123563083 -25953954 - RLTR23 LTR ERV1 -37 393 8 8 1527 845 259 39 61 chr6 123563229 123563509 -25953528 - RLTR19-int LTR ERVK -1767 4370 4097 8 1527 328 310 78 45 chr6 123563572 123563751 -25953286 - MMERGLN-int LTR ERV1 -3738 3818 3634 8 1527 38783 33 3 6 chr6 123563790 123569852 -25947185 - L1Md_T LINE L1 -1 6581 544 8 1527 184 94 0 111 chr6 123569871 123569907 -25947130 - L2 LINE L2 -1084 2335 2304 8 1527 3209 53 5 0 chr6 123570365 123570759 -25946278 + MTA_Mm LTR MaLR 1 396 0 8 1527 2837 210 73 62 chr6 123571165 123571316 -25945721 + RLTR22_Mur LTR ERVK 1 180 -1668 8 1527 369 86 0 0 chr6 123571316 123571374 -25945663 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1527 2837 210 73 62 chr6 123571374 123572071 -25944966 + RLTR22_Mur LTR ERVK 181 858 -990 8 1527 287 261 14 0 chr6 123572689 123572758 -25944279 - RLTR23 LTR ERV1 0 430 361 8 1527 430 237 0 58 chr6 123573061 123573164 -25943873 - RLTR23 LTR ERV1 -326 104 8 8 1527 185 47 44 44 chr6 123573862 123573907 -25943130 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 9 1527 1429 294 61 51 chr6 123574278 123575337 -25941700 + RMER1B Other Other 2 1066 0 9 1527 531 252 76 0 chr6 123576187 123576318 -25940719 - B1_Mus1 SINE Alu -6 142 2 9 1527 371 106 15 0 chr6 123576720 123576786 -25940251 + (TTTC)n Simple_repeat Simple_repeat 4 70 0 9 1527 223 224 0 96 chr6 123576977 123577071 -25939966 + A-rich Low_complexity Low_complexity 2 86 0 9 1527 566 171 28 0 chr6 123577353 123577495 -25939542 + RMER6C LTR ERVK 6 195 -561 9 1527 5257 155 66 11 chr6 123577517 123578470 -25938567 + Lx LINE L1 5587 6591 -63 9 1527 637 199 7 13 chr6 123578476 123578629 -25938408 + RMER6C LTR ERVK 161 312 -378 9 1527 631 222 96 22 chr6 123578636 123578864 -25938173 - RMER12 LTR ERVK 0 1322 1128 9 1527 4866 268 101 16 chr6 123579407 123582225 -25934812 + Lx5 LINE L1 4103 7456 -4 9 1527 231 262 0 0 chr6 123582232 123582274 -25934763 + Lx7 LINE L1 6947 6988 -708 9 1527 22 35 0 0 chr6 123582313 123582342 -25934695 + AT_rich Low_complexity Low_complexity 1 29 0 1 1527 260 53 0 26 chr6 123582350 123582389 -25934648 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1 1527 377 286 19 0 chr6 123582432 123582537 -25934500 + Lx7 LINE L1 7193 7299 -397 9 1527 318 72 0 68 chr6 123582663 123582737 -25934300 + (TTTTTG)n Simple_repeat Simple_repeat 2 70 0 1 1527 457 346 133 18 chr6 123582913 123583243 -25933794 + Lx8 LINE L1 7041 7408 -65 1 1527 369 0 0 0 chr6 123583284 123583325 -25933712 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1527 964 308 62 30 chr6 123583349 123583687 -25933350 + ORR1E LTR MaLR 1 349 -10 1 1527 414 288 20 122 chr6 123583696 123583941 -25933096 + L1M2 LINE L1 5490 5709 -582 1 1527 970 263 90 12 chr6 123583968 123584311 -25932726 + ORR1D2 LTR MaLR 1 370 0 1 1527 217 319 0 0 chr6 123584546 123584618 -25932419 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1527 338 106 0 0 chr6 123584629 123584676 -25932361 + HAL1-3A_ME LINE L1 1976 2022 -836 1 1527 1020 265 78 9 chr6 123584738 123585084 -25931953 - ORR1D2 LTR MaLR 0 370 1 1 1527 391 245 89 19 chr6 123585250 123585408 -25931629 + L1M3 LINE L1 4412 4580 -1563 1 1527 504 59 0 0 chr6 123585448 123585516 -25931521 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1527 198 0 0 0 chr6 123585516 123585537 -25931500 + (CG)n Simple_repeat Simple_repeat 2 23 0 1 1527 438 286 122 37 chr6 123585641 123586368 -25930669 + L1M3 LINE L1 4678 5491 -671 1 1527 246 182 73 0 chr6 123586616 123586671 -25930366 + L1M3 LINE L1 5483 5541 -627 1 1527 864 143 0 0 chr6 123589482 123589622 -25927415 - L1_Mus2 LINE L1 0 6566 6427 1 1527 623 64 0 0 chr6 123589623 123589701 -25927336 + L1_Mus2 LINE L1 6356 6433 -133 1 1527 423 56 0 0 chr6 123590319 123590373 -25926664 + (TATG)n Simple_repeat Simple_repeat 2 55 0 1 1527 569 378 24 17 chr6 123590378 123590666 -25926371 + B4A SINE B4 1 290 -2 1 1527 303 140 0 0 chr6 123590733 123590783 -25926254 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1527 357 24 0 0 chr6 123590783 123590825 -25926212 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1527 241 229 0 40 chr6 123591042 123591092 -25925945 + B2_Mm1t SINE B2 52 99 -94 1 1527 204 67 0 0 chr6 123591109 123591139 -25925898 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1527 333 0 0 0 chr6 123591437 123591474 -25925563 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1527 566 317 123 47 chr6 123591569 123592254 -25924783 + L1M2 LINE L1 4255 4991 -1152 1 1527 350 358 58 8 chr6 123592483 123592604 -25924433 + B1_Mur2 SINE Alu 2 128 -21 1 1527 2209 84 3 48 chr6 123592606 123592943 -25924094 + RLTRETN_Mm LTR ERVK 1 322 0 1 1527 24045 55 7 13 chr6 123592943 123596099 -25920938 + MMETn-int LTR ERVK 1 3136 -1708 1 1527 9378 106 14 20 chr6 123596112 123597518 -25919519 + ETnERV-int LTR ERVK 1658 3055 -259 1 1527 246 302 108 59 chr6 123597519 123597723 -25919314 + RLTR13A2 LTR ERVK 277 490 -468 1 1527 759 156 7 49 chr6 123597723 123597865 -25919172 + MMETn-int LTR ERVK 4709 4844 0 1 1527 2257 75 3 48 chr6 123597865 123598202 -25918835 + RLTRETN_Mm LTR ERVK 1 322 0 1 1527 724 221 0 28 chr6 123599553 123599694 -25917343 - B1_Mur1 SINE Alu -6 143 11 1 1527 435 78 0 0 chr6 123600327 123600391 -25916646 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1528 238 256 10 109 chr6 123601461 123601487 -25915550 - BC1_Mm scRNA scRNA -48 104 85 1 1528 237 65 0 0 chr6 123601487 123601518 -25915519 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1 1528 238 256 10 109 chr6 123601518 123601592 -25915445 - BC1_Mm scRNA scRNA -68 84 14 1 1528 2020 158 14 3 chr6 123601939 123602300 -25914737 - Lx5 LINE L1 -1099 5951 5587 1 1528 2697 231 39 37 chr6 123602313 123603101 -25913936 - L1_Mur2 LINE L1 -3137 2740 1951 1 1528 751 190 28 0 chr6 123603129 123603271 -25913766 - B1_Mus1 SINE Alu -1 147 2 1 1528 21 57 0 0 chr6 123603272 123603307 -25913730 + AT_rich Low_complexity Low_complexity 1 35 0 1 1528 817 274 48 74 chr6 123603365 123603786 -25913251 + L1VL4 LINE L1 224 633 -5669 1 1528 1754 161 21 0 chr6 123603787 123604078 -25912959 - ETnERV2-int LTR ERVK -433 6973 6677 1 1528 1069 289 29 33 chr6 123604127 123604663 -25912374 - ETnERV2-int LTR ERVK -413 7804 7408 1 1528 540 315 44 66 chr6 123604353 123604853 -25912184 - RLTR6-int LTR ERV1 -141 7637 7149 1 1528 466 314 6 6 chr6 123605159 123605329 -25911708 - RLTR45-int LTR ERVK -5742 1502 1333 1 1528 333 216 33 43 chr6 123605726 123605818 -25911219 - RLTR6-int LTR ERV1 -1532 6246 6156 1 1528 417 260 9 9 chr6 123605738 123605843 -25911194 - ETnERV2-int LTR ERVK -1880 6337 6233 1 1528 618 287 54 60 chr6 123606305 123606639 -25910398 - ETnERV2-int LTR ERVK -2510 5707 5376 1 1528 664 206 41 0 chr6 123607088 123607234 -25909803 + RNERVK23-int LTR ERVK 569 720 -6524 1 1528 515 246 8 0 chr6 123607561 123607679 -25909358 + RNERVK23-int LTR ERVK 693 811 -6433 1 1528 264 257 50 106 chr6 123607919 123608080 -25908957 + RNERVK23-int LTR ERVK 913 1064 -6180 1 1528 2007 304 51 37 chr6 123608325 123609675 -25907362 + RNERVK23-int LTR ERVK 2249 3725 -4492 1 1528 285 357 54 33 chr6 123609829 123610347 -25906690 + RNERVK23-int LTR ERVK 4179 4707 -3510 1 1528 228 319 14 0 chr6 123610495 123610567 -25906470 + 7SK RNA RNA 35 107 -224 1 1528 614 311 12 12 chr6 123610586 123610830 -25906207 + RNERVK23-int LTR ERVK 4944 5187 -3030 1 1528 217 261 0 28 chr6 123610873 123610944 -25906093 + A-rich Low_complexity Low_complexity 2 70 0 1 1528 847 195 185 69 chr6 123611187 123611447 -25905590 + RMER6C LTR ERVK 10 312 -378 1 1528 651 224 83 13 chr6 123611484 123611675 -25905362 - RMER12 LTR ERVK -30 1292 1123 1 1528 1132 97 0 0 chr6 123611882 123612027 -25905010 + B1_Mus2 SINE Alu 1 145 -2 1 1528 298 0 48 0 chr6 123612027 123612069 -25904968 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1528 678 65 0 0 chr6 123612359 123612451 -25904586 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 1528 246 175 63 0 chr6 123612451 123612514 -25904523 + L1_Mur3 LINE L1 2553 2619 -3261 1 1528 1146 239 40 17 chr6 123612509 123612914 -25904123 + L1_Mur3 LINE L1 4103 4516 -1364 1 1528 3886 102 15 0 chr6 123613030 123613578 -25903459 + L1_Mus1 LINE L1 6012 6567 0 1 1528 256 262 12 0 chr6 123613600 123613680 -25903357 - L1_Mur3 LINE L1 -1137 4743 4663 1 1528 548 281 52 47 chr6 123613684 123613897 -25903140 + Lx6 LINE L1 7183 7396 -64 1 1528 4989 149 36 12 chr6 123613896 123614029 -25903008 + L1VL4 LINE L1 45 177 -6125 1 1528 2324 96 27 3 chr6 123614029 123614362 -25902675 + IAPLTR4 LTR ERVK 1 341 -4 1 1528 4989 129 21 10 chr6 123614362 123615574 -25901463 + L1VL4 LINE L1 178 1409 -2150 1 1528 8259 168 23 17 chr6 123615573 123618021 -25899016 + Lx LINE L1 4185 6654 0 1 1528 275 72 0 23 chr6 123618032 123618075 -25898962 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1 1528 248 300 33 0 chr6 123618132 123618222 -25898815 + Lx7 LINE L1 7207 7299 -397 1 1528 416 293 32 0 chr6 123618634 123618757 -25898280 + Lx8 LINE L1 7167 7293 -180 1 1528 442 0 17 17 chr6 123618895 123618954 -25898083 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1528 991 279 66 28 chr6 123618973 123619303 -25897734 + ORR1E LTR MaLR 22 421 0 1 1528 477 263 36 31 chr6 123619303 123619495 -25897542 + L1M2 LINE L1 5495 5687 -604 1 1528 433 266 31 24 chr6 123619544 123619671 -25897366 + ORR1D2 LTR MaLR 1 128 -242 1 1528 392 179 76 13 chr6 123619662 123619741 -25897296 + ORR1D2 LTR MaLR 287 370 0 1 1528 198 233 0 0 chr6 123619973 123620033 -25897004 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1528 966 277 68 17 chr6 123620123 123620475 -25896562 - ORR1D2 LTR MaLR 0 370 1 1 1528 558 284 155 23 chr6 123620635 123621380 -25895657 + L1M3 LINE L1 4408 5264 -876 1 1528 229 326 15 15 chr6 123621441 123621575 -25895462 + L1M3 LINE L1 5346 5479 -833 1 1528 542 301 30 20 chr6 123624581 123624879 -25892158 - L1_Mur3 LINE L1 -3291 2589 2289 1 1528 7955 46 1 0 chr6 123624879 123625895 -25891142 - L1Md_F2 LINE L1 -12 6570 5584 1 1528 739 337 42 32 chr6 123625896 123626031 -25891006 - L1_Mur3 LINE L1 -3587 2293 2154 1 1528 393 39 0 0 chr6 123626031 123626082 -25890955 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1528 739 317 67 37 chr6 123626082 123627025 -25890012 - L1_Mur3 LINE L1 -3674 2173 1204 1 1528 1695 99 0 8 chr6 123627053 123627298 -25889739 + RMER17D2 LTR ERVK 1 243 -566 1 1528 2031 126 47 41 chr6 123627390 123627755 -25889282 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1528 53842 17 10 7 chr6 123627755 123634211 -25882826 + IAPEz-int LTR ERVK 8 6481 0 1 1528 2031 126 47 41 chr6 123634211 123634576 -25882461 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1528 2203 138 151 12 chr6 123634666 123635113 -25881924 + RMER17D2 LTR ERVK 244 763 -46 1 1528 4099 138 35 33 chr6 123635113 123635863 -25881174 - RMER17A LTR ERVK 0 751 1 1 1528 2203 138 151 12 chr6 123635863 123635912 -25881125 + RMER17D2 LTR ERVK 764 809 0 1 1528 336 259 0 41 chr6 123635968 123636089 -25880948 - Lx2B LINE L1 -6 6994 6879 1 1528 30651 72 4 4 chr6 123637103 123642320 -25874717 + L1Md_F2 LINE L1 275 5589 -297 1 1528 7792 51 13 4 chr6 123642320 123643307 -25873730 + L1Md_F2 LINE L1 5590 6585 0 1 1528 25 0 0 0 chr6 123643996 123644021 -25873016 + AT_rich Low_complexity Low_complexity 1 25 0 1 1528 1091 82 7 0 chr6 123644090 123644236 -25872801 - B1_Mus1 SINE Alu 0 148 2 1 1528 455 292 47 55 chr6 123644485 123644742 -25872295 + L1M2 LINE L1 4149 4403 -1740 1 1528 1657 290 95 38 chr6 123644819 123645896 -25871141 - Lx5 LINE L1 -43 7417 6066 1 1528 2583 201 15 9 chr6 123645893 123646567 -25870470 + L1_Mur2 LINE L1 1146 1824 -4053 1 1528 2375 113 7 64 chr6 123646577 123646982 -25870055 - RLTR9A2 LTR ERVK -1 382 1 1 1528 310 176 26 26 chr6 123646983 123647059 -25869978 - ETnERV2-int LTR ERVK -2 7404 7329 1 1528 607 218 50 35 chr6 123647265 123647465 -25869572 - ETnERV2-int LTR ERVK -981 6425 6223 1 1528 468 267 33 20 chr6 123647505 123647658 -25869379 - ETnERV2-int LTR ERVK -1166 6240 6086 1 1528 8315 176 68 51 chr6 123647655 123648494 -25868543 - RMER16-int LTR ERVK -1230 4176 3299 1 1528 198 0 0 0 chr6 123648494 123648516 -25868521 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1 1528 8315 176 68 51 chr6 123648516 123648771 -25868266 - RMER16-int LTR ERVK -2108 3298 3041 1 1528 3421 149 39 30 chr6 123648771 123649394 -25867643 + RLTR5_Mm LTR ERV1 1 628 0 1 1528 8315 176 68 51 chr6 123649394 123649552 -25867485 - RMER16-int LTR ERVK -2366 3040 2893 1 1528 242 39 77 0 chr6 123649552 123649604 -25867433 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1528 8315 176 68 51 chr6 123649604 123650439 -25866598 - RMER16-int LTR ERVK -2514 2892 2054 1 1528 233 143 0 0 chr6 123650466 123650508 -25866529 + Lx5 LINE L1 5910 5951 -1099 1 1528 3578 147 47 45 chr6 123650528 123651278 -25865759 + RMER17A LTR ERVK 1 751 0 1 1528 251 338 0 24 chr6 123651466 123651548 -25865489 + ID_B1 SINE B4 78 157 -67 1 1528 235 321 0 0 chr6 123651577 123651630 -25865407 + ID4_ SINE ID 24 76 -7 1 1528 285 109 0 0 chr6 123651640 123651686 -25865351 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 1 1528 2133 96 10 3 chr6 123651741 123652044 -25864993 - L1_Mus3 LINE L1 -5 6633 6329 1 1528 702 173 0 0 chr6 123653179 123653405 -25863632 + CT-rich Low_complexity Low_complexity 1 226 0 1 1528 373 318 41 12 chr6 123653405 123653647 -25863390 - Lx8 LINE L1 -84 7389 7141 1 1528 21 0 0 0 chr6 123653784 123653805 -25863232 + AT_rich Low_complexity Low_complexity 1 21 0 1 1528 669 250 0 8 chr6 123653892 123654025 -25863012 + B1_Mur2 SINE Alu 9 140 -9 1 1528 200 59 29 0 chr6 123654025 123654059 -25862978 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1528 207 0 0 0 chr6 123654064 123654087 -25862950 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1 1528 22 35 0 0 chr6 123654302 123654331 -25862706 + AT_rich Low_complexity Low_complexity 1 29 0 1 1528 441 239 64 21 chr6 123655422 123655563 -25861474 - B1_Mur1 SINE Alu -1 148 2 1 1528 420 319 88 82 chr6 123655781 123656375 -25860662 - L1M2 LINE L1 -959 5184 4588 1 1528 345 47 0 0 chr6 123656375 123656418 -25860619 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1528 355 291 82 69 chr6 123656498 123656815 -25860222 - L1M2 LINE L1 -1699 4441 4121 1 1528 2825 60 8 0 chr6 123657333 123657698 -25859339 - L1Md_F2 LINE L1 0 6582 6215 1 1528 238 184 39 58 chr6 123657964 123658016 -25859021 - B2_Mm2 SINE B2 -101 94 44 1 1528 567 134 0 0 chr6 123658221 123658340 -25858697 + (TC)n Simple_repeat Simple_repeat 2 120 0 2 1528 348 24 0 0 chr6 123658340 123658381 -25858656 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1528 380 282 81 61 chr6 123658420 123658817 -25858220 - L1MA4 LINE L1 -406 5894 5408 2 1528 754 295 0 19 chr6 123658817 123659031 -25858006 - B3 SINE B2 -6 210 1 2 1528 301 303 92 97 chr6 123659031 123659189 -25857848 - L1MA4 LINE L1 -440 5407 5274 2 1528 327 322 50 44 chr6 123659244 123659403 -25857634 + Charlie12 DNA MER1_type 1 160 -2713 2 1528 451 340 6 25 chr6 123659262 123659425 -25857612 - RMER30 DNA MER1_type -15 187 28 2 1528 1299 0 35 0 chr6 123660042 123660213 -25856824 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 2 1528 244 308 0 0 chr6 123660218 123660296 -25856741 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1528 471 371 66 10 chr6 123660350 123660546 -25856491 - B4A SINE B4 -38 254 48 2 1528 501 115 0 0 chr6 123660568 123660646 -25856391 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 1528 23 33 0 0 chr6 123661363 123661393 -25855644 + AT_rich Low_complexity Low_complexity 1 30 0 2 1528 182 242 27 96 chr6 123662362 123662435 -25854602 - L3 LINE CR1 -2289 2200 2133 2 1528 315 246 150 0 chr6 123663961 123664056 -25852981 + PB1D10 SINE Alu 2 110 -7 2 1528 331 293 109 49 chr6 123664667 123665015 -25852022 - L1M2 LINE L1 -876 5264 4896 2 1528 388 295 79 33 chr6 123665144 123665449 -25851588 - L1M2 LINE L1 -1406 4737 4419 2 1528 1846 270 72 77 chr6 123665463 123666081 -25850956 - Lx5 LINE L1 -602 6448 5778 2 1528 806 78 0 9 chr6 123666081 123666197 -25850840 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 2 1528 457 33 0 16 chr6 123666197 123666258 -25850779 - B1_Mus2 SINE Alu -12 135 76 2 1528 2672 215 57 22 chr6 123666258 123666964 -25850073 - Lx5 LINE L1 -1273 5777 5037 2 1528 24 0 0 0 chr6 123666973 123666997 -25850040 + AT_rich Low_complexity Low_complexity 1 24 0 2 1528 1933 238 56 38 chr6 123666997 123667500 -25849537 - RLTR20B3 LTR ERVK -44 533 22 2 1528 2337 234 48 69 chr6 123667505 123668464 -25848573 - Lx5 LINE L1 -841 5039 4101 2 1528 359 73 18 0 chr6 123668636 123668691 -25848346 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 2 1528 235 311 40 0 chr6 123668697 123668771 -25848266 - ID4_ SINE ID -1 82 6 2 1528 241 156 0 0 chr6 123669153 123669198 -25847839 - L1M3 LINE L1 -3984 2156 2112 2 1528 648 70 0 0 chr6 123669204 123669290 -25847747 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 2 1528 1086 140 0 0 chr6 123669302 123669481 -25847556 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 2 1528 252 0 0 0 chr6 123669481 123669509 -25847528 + (CCCA)n Simple_repeat Simple_repeat 1 28 0 2 1528 501 17 0 0 chr6 123669509 123669566 -25847471 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2 1528 13144 99 9 5 chr6 123669831 123672544 -25844493 - L1_Mus2 LINE L1 -1 6565 3839 2 1528 254 0 83 0 chr6 123672553 123672589 -25844448 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1528 241 326 80 94 chr6 123673133 123673346 -25843691 + LTR82A LTR ERVL 663 872 0 2 1528 453 318 78 32 chr6 123673633 123674107 -25842930 - L1MD1 LINE L1 -14 6228 5733 2 1528 8208 55 8 2 chr6 123674112 123675897 -25841140 - L1Md_F3 LINE L1 0 6584 4789 2 1528 13659 128 85 28 chr6 123675893 123679037 -25838000 - L1Md_F3 LINE L1 -2501 3382 220 2 1528 602 201 8 3 chr6 123679196 123679343 -25837694 + L1_Mur2 LINE L1 5016 5189 -951 2 1528 2255 182 13 17 chr6 123680125 123680583 -25836454 - RMER6A LTR ERVK -1 755 300 2 1528 1645 310 91 84 chr6 123680583 123681230 -25835807 + RMER12 LTR ERVK 4 687 -635 2 1528 2746 82 13 3 chr6 123681230 123681611 -25835426 - L1_Mus3 LINE L1 -10 6628 6244 2 1528 1645 310 91 84 chr6 123681611 123682243 -25834794 + RMER12 LTR ERVK 688 1293 -29 2 1528 747 201 77 46 chr6 123682272 123682485 -25834552 - RMER6A LTR ERVK -368 322 55 2 1528 206 32 0 31 chr6 123682485 123682517 -25834520 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1528 544 193 80 74 chr6 123682517 123682570 -25834467 - RMER6A LTR ERVK -407 54 2 2 1528 216 0 0 0 chr6 123682796 123682820 -25834217 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1528 31 88 0 0 chr6 123683024 123683104 -25833933 + AT_rich Low_complexity Low_complexity 1 80 0 2 1528 211 189 0 0 chr6 123683115 123683152 -25833885 + GA-rich Low_complexity Low_complexity 2 38 0 2 1528 663 200 89 0 chr6 123683592 123683727 -25833310 + B1_Mus1 SINE Alu 2 148 0 2 1528 372 281 10 30 chr6 123683808 123683907 -25833130 - PB1 SINE Alu -30 97 1 2 1528 217 352 80 6 chr6 123684034 123684208 -25832829 - MIRb SINE MIR -23 245 55 2 1528 396 0 0 0 chr6 123684742 123684786 -25832251 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2 1528 1766 244 65 75 chr6 123684990 123685107 -25831930 - RMER1B Other Other 0 1066 921 2 1528 189 0 0 0 chr6 123685107 123685128 -25831909 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 2 1528 1766 261 124 82 chr6 123685128 123686559 -25830478 - RMER1B Other Other -146 920 1 2 1528 4926 137 27 85 chr6 123687124 123688082 -25828955 + RMER17A2 LTR ERVK 1 903 -3 2 1528 5412 138 54 6 chr6 123688628 123689524 -25827513 - Lx2 LINE L1 0 6997 6059 2 1528 761 40 10 0 chr6 123689922 123690023 -25827014 + (TG)n Simple_repeat Simple_repeat 1 102 0 2 1528 324 295 60 7 chr6 123690024 123690174 -25826863 - RLTR22_Mur LTR ERVK -1690 158 1 2 1528 660 314 75 48 chr6 123690218 123690481 -25826556 + Lx8 LINE L1 6978 7246 -227 2 1528 1563 60 14 23 chr6 123690481 123690702 -25826335 - L1_Mus2 LINE L1 0 6566 6348 2 1528 660 314 75 48 chr6 123690702 123690919 -25826118 + Lx8 LINE L1 7247 7471 -2 2 1528 202 120 19 74 chr6 123691108 123691162 -25825875 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 2 1528 343 323 110 30 chr6 123694121 123694357 -25822680 - L1ME3B LINE L1 -192 6048 5794 2 1528 24 0 0 0 chr6 123695375 123695399 -25821638 + AT_rich Low_complexity Low_complexity 1 24 0 2 1528 842 295 61 33 chr6 123695405 123696109 -25820928 - L1M2 LINE L1 -1507 4636 3913 2 1528 219 103 0 0 chr6 123696228 123696267 -25820770 + (CATA)n Simple_repeat Simple_repeat 4 42 0 2 1528 360 359 82 7 chr6 123696306 123696445 -25820592 + B4 SINE B4 56 204 -88 2 1528 622 273 8 0 chr6 123696335 123696463 -25820574 + B1_Mur2 SINE Alu 6 134 -15 2 1528 528 252 8 39 chr6 123696600 123696728 -25820309 - B1_Mur1 SINE Alu -7 142 19 2 1528 541 227 14 9 chr6 123696832 123697003 -25820034 + L1_Mur2 LINE L1 4112 4278 -1599 2 1528 913 203 5 0 chr6 123697000 123697192 -25819845 - L1_Mm LINE L1 -661 5222 5030 2 1528 5902 81 3 2 chr6 123697186 123698329 -25818708 + L1Md_F2 LINE L1 5221 6364 -218 2 1528 1952 37 0 0 chr6 123698323 123698569 -25818468 - L1Md_F2 LINE L1 -559 6023 5778 2 1528 2304 231 40 36 chr6 123698601 123699285 -25817752 + Lx4B LINE L1 6373 7058 0 2 1528 431 87 14 0 chr6 123699317 123699386 -25817651 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1528 378 224 0 0 chr6 123699807 123699959 -25817078 + (CA)n Simple_repeat Simple_repeat 2 153 0 2 1528 306 279 7 14 chr6 123700040 123700212 -25816825 - Lx9 LINE L1 -1670 5974 5770 2 1528 313 246 109 72 chr6 123700217 123700410 -25816627 - L1_Rod LINE L1 -3815 2032 1833 2 1528 580 245 116 21 chr6 123700429 123700671 -25816366 - Lx6 LINE L1 -30 7430 7166 2 1528 761 284 60 57 chr6 123700681 123701014 -25816023 + RMER5 LTR ERV1 190 523 -11 2 1528 611 331 9 16 chr6 123701032 123701351 -25815686 + L1M2 LINE L1 4724 5040 -1103 2 1528 296 327 90 60 chr6 123701548 123701714 -25815323 + RMER5 LTR ERV1 243 413 -121 2 1528 5355 214 31 7 chr6 123702155 123703400 -25813637 - Lx4A LINE L1 0 7058 5784 2 1528 1272 159 14 0 chr6 123703406 123703626 -25813411 - Lx2 LINE L1 0 6997 6775 2 1528 4408 148 28 15 chr6 123703626 123704449 -25812588 - Lx2 LINE L1 -354 6643 5810 2 1528 2729 50 10 47 chr6 123704449 123704859 -25812178 - RLTR10 LTR ERVK -5 385 1 2 1528 714 127 9 0 chr6 123704859 123704990 -25812047 - L1_Mus4 LINE L1 -336 5828 5702 2 1528 7989 32 1 0 chr6 123705073 123706412 -25810625 - L1Md_T LINE L1 0 6582 5243 2 1528 36991 51 5 8 chr6 123706411 123712704 -25804333 - L1Md_T LINE L1 0 6582 308 2 1528 1863 143 0 0 chr6 123712704 123713004 -25804033 - L1_Mm LINE L1 -166 5717 5418 2 1528 5402 115 5 6 chr6 123713003 123714577 -25802460 - L1VL4 LINE L1 -1796 1763 191 2 1528 10273 170 41 31 chr6 123714584 123716854 -25800183 - L1_Mur2 LINE L1 -106 5771 3478 2 1528 4482 140 41 19 chr6 123716842 123716942 -25800095 - L1_Mur2 LINE L1 -3725 2152 2056 2 1528 441 0 0 0 chr6 123716942 123716991 -25800046 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1528 4482 157 38 15 chr6 123716991 123718310 -25798727 - L1_Mur2 LINE L1 -3822 2055 712 2 1528 462 119 0 0 chr6 123718588 123718672 -25798365 + (TG)n Simple_repeat Simple_repeat 2 85 0 2 1528 1555 280 85 40 chr6 123718783 123719818 -25797219 - L1_Mur3 LINE L1 -1620 4260 3179 2 1528 777 267 44 5 chr6 123720084 123720287 -25796750 - B3 SINE B2 -5 211 1 2 1528 10212 114 22 17 chr6 123720390 123722275 -25794762 - L1_Mus3 LINE L1 0 6638 4746 2 1528 1958 86 6 67 chr6 123722275 123722587 -25794450 - L1_Mus2 LINE L1 0 6566 6274 2 1528 25551 153 31 18 chr6 123722587 123726910 -25790127 - L1_Mus3 LINE L1 -1138 4745 353 2 1528 787 262 109 28 chr6 123726939 123726976 -25790061 - L1_Mur3 LINE L1 -3071 2809 2774 2 1528 1624 231 69 33 chr6 123726976 123727486 -25789551 - RLTR12B LTR ERVK 0 528 1 2 1528 787 262 109 28 chr6 123727486 123727841 -25789196 - L1_Mur3 LINE L1 -3107 2773 2385 2 1528 183 80 0 0 chr6 123727848 123727873 -25789164 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 2 1528 437 181 0 0 chr6 123727898 123728066 -25788971 + L1_Mus3 LINE L1 6533 6638 0 2 1528 279 259 0 11 chr6 123728080 123728170 -25788867 + Lx3A LINE L1 6892 6980 -1 2 1528 22 0 0 0 chr6 123728310 123728332 -25788705 + AT_rich Low_complexity Low_complexity 1 22 0 2 1528 298 143 23 23 chr6 123729331 123729417 -25787620 + (TCTCTG)n Simple_repeat Simple_repeat 6 91 0 2 1528 450 306 88 18 chr6 123729417 123729456 -25787581 - Lx2B LINE L1 -89 7384 7336 2 1528 294 50 0 0 chr6 123729456 123729496 -25787541 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1528 450 306 88 18 chr6 123729496 123729682 -25787355 - Lx2B LINE L1 -138 7335 7143 2 1528 676 223 13 36 chr6 123729985 123730142 -25786895 + B1_Mur1 SINE Alu 5 315 0 2 1528 579 217 43 14 chr6 123731463 123731603 -25785434 - B1_Mur1 SINE Alu -1 148 5 2 23 4070 183 25 11 chr6 123731655 123732439 -25784598 - Lx2B LINE L1 -14 6986 6192 2 1529 1786 169 24 9 chr6 123732466 123732800 -25784237 - Lx2B LINE L1 -1075 5925 5587 2 1529 24 0 0 0 chr6 123732802 123732826 -25784211 + AT_rich Low_complexity Low_complexity 1 24 0 2 1529 2889 250 37 11 chr6 123732922 123733762 -25783275 - Lx2B LINE L1 -22 6978 5774 2 1529 455 175 8 0 chr6 123734259 123734379 -25782658 + CT-rich Low_complexity Low_complexity 2 122 0 2 1529 246 260 16 8 chr6 123734380 123734508 -25782529 + (TG)n Simple_repeat Simple_repeat 2 130 0 3 1529 630 321 12 12 chr6 123734601 123734771 -25782266 - B4A SINE B4 -122 170 1 3 1529 24 0 0 0 chr6 123735233 123735257 -25781780 + AT_rich Low_complexity Low_complexity 1 24 0 3 1529 26 64 0 0 chr6 123735305 123735352 -25781685 + AT_rich Low_complexity Low_complexity 1 47 0 3 1529 243 284 15 0 chr6 123737906 123737973 -25779064 + PB1D10 SINE Alu 18 85 -32 3 1529 1126 276 38 27 chr6 123737981 123738669 -25778368 - Lx6 LINE L1 -611 6849 5927 3 1529 2291 244 17 3 chr6 123738663 123739244 -25777793 - Lx6 LINE L1 -133 5747 5159 3 1529 5664 69 63 5 chr6 123739245 123740021 -25777016 - L1Md_F2 LINE L1 0 6582 5762 3 1529 556 93 0 0 chr6 123740021 123740096 -25776941 + L1Md_F2 LINE L1 6107 6181 -401 3 1529 342 243 0 0 chr6 123740093 123740163 -25776874 - Lx6 LINE L1 -706 5171 5102 3 1529 2123 241 19 45 chr6 123740223 123740750 -25776287 - RLTR20B3 LTR ERVK -43 534 22 3 1529 254 150 0 0 chr6 123740755 123740795 -25776242 - Lx6 LINE L1 -841 5039 5000 3 1529 1339 224 26 29 chr6 123740892 123741274 -25775763 - Lx6 LINE L1 -841 5039 4659 3 1529 340 121 0 70 chr6 123741274 123741345 -25775692 - Lx6 LINE L1 -1375 4505 4440 3 1529 892 182 7 7 chr6 123741345 123741642 -25775395 + CT-rich Low_complexity Low_complexity 1 297 0 3 1529 307 200 15 0 chr6 123741646 123741711 -25775326 - Lx6 LINE L1 -1521 4359 4294 3 1529 2342 105 99 8 chr6 123741714 123741918 -25775119 - BGLII_Mus LTR ERVK -2 420 192 3 1529 669 58 0 0 chr6 123741918 123742004 -25775033 + (TC)n Simple_repeat Simple_repeat 1 86 0 3 1529 2342 105 99 8 chr6 123742004 123742184 -25774853 - BGLII_Mus LTR ERVK -231 191 2 3 1529 765 238 10 21 chr6 123742184 123742377 -25774660 - Lx6 LINE L1 -1580 4297 4107 3 1529 3327 234 29 59 chr6 123742384 123743439 -25773598 - Lx6 LINE L1 -3268 2612 1589 3 1529 379 202 0 10 chr6 123743472 123743572 -25773465 - Lx LINE L1 -1 6653 6555 3 1529 328 177 8 110 chr6 123745696 123745823 -25771214 - L1_Mur1 LINE L1 -4354 1532 1419 3 1529 430 188 20 0 chr6 123745828 123745929 -25771108 + CT-rich Low_complexity Low_complexity 4 106 0 3 1529 388 205 0 0 chr6 123745945 123746028 -25771009 + L1VL4 LINE L1 235 317 -5985 3 1529 336 48 0 0 chr6 123746688 123746730 -25770307 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1529 267 238 0 0 chr6 123746774 123746833 -25770204 - L1MEf LINE L1 -4616 1862 1818 3 1529 262 291 0 52 chr6 123746827 123746943 -25770094 + L1MA7 LINE L1 6029 6138 -153 3 1529 513 278 6 24 chr6 123747247 123747413 -25769624 - L1M5 LINE L1 -1480 4666 4504 3 1529 3724 156 11 20 chr6 123747632 123748274 -25768763 - Lx LINE L1 0 6654 6019 3 1529 29 28 0 0 chr6 123748282 123748318 -25768719 + AT_rich Low_complexity Low_complexity 1 36 0 3 1529 6296 137 4 10 chr6 123748567 123749713 -25767324 - L1VL4 LINE L1 -2447 1112 20 3 1529 10077 119 21 18 chr6 123749716 123751416 -25765621 + MusHAL1 LINE L1 711 2416 -296 3 1529 229 250 27 14 chr6 123751497 123751570 -25765467 - L1MCa LINE L1 -3778 2543 2470 3 1529 330 80 0 0 chr6 123751738 123751788 -25765249 + (T)n Simple_repeat Simple_repeat 1 50 0 3 1529 242 216 91 0 chr6 123752092 123752180 -25764857 - L1MCa LINE L1 -4268 2240 2145 3 1529 329 300 72 36 chr6 123752430 123752596 -25764441 - L1MCa LINE L1 -4731 1777 1606 3 1529 231 0 0 71 chr6 123752632 123752674 -25764363 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1529 1189 61 0 0 chr6 123752678 123752825 -25764212 - B1_Mm SINE Alu 0 147 1 3 1529 1658 28 14 27 chr6 123753232 123753453 -25763584 - L1Md_F3 LINE L1 -14 6570 6353 3 1529 653 239 76 191 chr6 123754809 123754852 -25762185 + RMER12 LTR ERVK 958 1015 -307 3 1529 1137 88 0 0 chr6 123754852 123755011 -25762026 + (TTTCC)n Simple_repeat Simple_repeat 2 160 0 3 1529 653 239 76 191 chr6 123755011 123755350 -25761687 + RMER12 LTR ERVK 1016 1296 -26 3 1529 1098 199 173 37 chr6 123755376 123755648 -25761389 - RMER6A LTR ERVK -447 309 1 3 1529 273 57 0 0 chr6 123755930 123755965 -25761072 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1529 29 60 0 0 chr6 123756128 123756178 -25760859 + AT_rich Low_complexity Low_complexity 1 50 0 3 1529 485 254 90 0 chr6 123756738 123756872 -25760165 + B1_Mus2 SINE Alu 2 147 0 3 1529 391 346 0 0 chr6 123756947 123757051 -25759986 - PB1 SINE Alu -22 105 2 3 1529 184 372 87 6 chr6 123757186 123757359 -25759678 - MIRb SINE MIR -23 245 59 3 1529 1772 238 72 47 chr6 123757440 123757951 -25759086 - RMER1B Other Other -9 1057 534 3 1529 265 302 16 0 chr6 123758734 123758797 -25758240 - tRNA-Ala-GCA tRNA tRNA -8 67 4 3 1529 543 118 0 0 chr6 123759282 123759367 -25757670 + (TTTTC)n Simple_repeat Simple_repeat 1 85 0 3 1529 249 229 73 60 chr6 123759368 123759468 -25757569 - B1_Mur1 SINE Alu -8 141 35 3 1529 2346 165 20 31 chr6 123759722 123760131 -25756906 - Lx3A LINE L1 -3 6978 6574 3 1529 5612 111 103 10 chr6 123760131 123761030 -25756007 - RLTR13C1 LTR ERVK 0 983 1 3 1529 2346 165 20 31 chr6 123761030 123761070 -25755967 - Lx3A LINE L1 -408 6573 6534 3 1529 25 51 0 0 chr6 123761105 123761144 -25755893 + AT_rich Low_complexity Low_complexity 1 39 0 3 1529 766 237 0 67 chr6 123761416 123761656 -25755381 - RLTR22_Mur LTR ERVK -35 1813 1590 3 1529 3228 77 4 41 chr6 123761672 123762134 -25754903 - L1_Mus1 LINE L1 0 6567 6123 3 1529 6959 99 4 1 chr6 123762134 123763267 -25753770 + L1_Mus1 LINE L1 4853 5988 -579 3 1529 250 215 73 31 chr6 123763454 123763550 -25753487 - RLTR22_Mur LTR ERVK -827 1021 922 3 1529 1686 234 126 24 chr6 123763633 123763700 -25753337 - RLTR22_Mur LTR ERVK -1099 749 683 3 1529 473 84 0 14 chr6 123763700 123763772 -25753265 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 1529 1686 234 126 24 chr6 123763772 123764238 -25752799 - RLTR22_Mur LTR ERVK -1166 682 162 3 1529 335 275 9 0 chr6 123764238 123764347 -25752690 + (TG)n Simple_repeat Simple_repeat 2 111 0 3 1529 297 247 123 49 chr6 123764351 123764513 -25752524 - RLTR22_Mur LTR ERVK -1671 177 4 3 1529 552 310 112 55 chr6 123764558 123765012 -25752025 + Lx8 LINE L1 6975 7454 -19 3 1529 5488 24 15 15 chr6 123766820 123767505 -25749532 - RLTR45-int LTR ERVK -4911 2333 1649 3 1529 719 48 0 3 chr6 123767573 123767676 -25749361 - RLTR13B1 LTR ERVK -299 594 435 3 1529 712 328 36 38 chr6 123767688 123768166 -25748871 - RNERVK23-int LTR ERVK -612 7605 7129 3 1529 1040 83 97 0 chr6 123768258 123768403 -25748634 - RLTR45-int LTR ERVK -5599 1645 1487 3 1529 2346 81 86 38 chr6 123768404 123768775 -25748262 - RLTR45-int LTR ERVK -5889 1355 967 3 1529 1078 67 0 0 chr6 123768772 123768906 -25748131 - RLTR45-int LTR ERVK -6419 825 692 3 1529 5095 67 22 17 chr6 123769255 123769943 -25747094 - RLTR45-int LTR ERVK -6553 691 1 3 1529 2480 136 22 78 chr6 123769944 123770454 -25746583 - RLTR45 LTR ERVK -1 481 1 3 1529 2402 71 9 0 chr6 123770744 123771066 -25745971 - L1_Mus2 LINE L1 0 6566 6242 3 1529 291 0 0 0 chr6 123771066 123771098 -25745939 + L1_Mus2 LINE L1 6201 6232 -334 3 1529 266 111 0 45 chr6 123772519 123772585 -25744452 + A-rich Low_complexity Low_complexity 1 63 0 3 1529 3903 121 40 19 chr6 123774010 123775079 -25741958 + RLTR13D1 LTR ERVK 1 788 -18 3 1529 231 157 0 0 chr6 123775551 123775602 -25741435 + CT-rich Low_complexity Low_complexity 2 52 0 3 1529 27 49 0 0 chr6 123775627 123775668 -25741369 + AT_rich Low_complexity Low_complexity 1 41 0 3 1529 1194 176 172 40 chr6 123776118 123776391 -25740646 + RMER6A LTR ERVK 1 309 -447 3 1529 770 199 50 173 chr6 123776420 123776761 -25740276 - RMER12 LTR ERVK -29 1293 995 3 1529 531 82 0 0 chr6 123776779 123776852 -25740185 + (GGAA)n Simple_repeat Simple_repeat 1 73 0 3 1529 2143 205 143 44 chr6 123776858 123777583 -25739454 - RMER12 LTR ERVK -525 797 1 3 1529 1868 211 43 11 chr6 123777583 123778023 -25739014 + RMER6A LTR ERVK 303 756 0 3 1529 34 79 0 0 chr6 123778951 123779027 -25738010 + AT_rich Low_complexity Low_complexity 1 76 0 3 1529 3009 78 2 5 chr6 123779234 123779635 -25737402 - MTB LTR MaLR 0 400 1 3 1529 21 0 0 0 chr6 123779647 123779668 -25737369 + AT_rich Low_complexity Low_complexity 1 21 0 3 1529 2621 311 63 37 chr6 123779676 123780771 -25736266 + Lx8 LINE L1 6307 7429 -44 3 1529 390 269 63 31 chr6 123780999 123781222 -25735815 + L1MCa LINE L1 1614 1843 -4665 3 1529 301 181 53 40 chr6 123781974 123782049 -25734988 + L1MCa LINE L1 2468 2543 -3778 3 1529 522 287 16 11 chr6 123782322 123782512 -25734525 + L1MCa LINE L1 4677 4867 -1454 3 1529 276 152 0 0 chr6 123783010 123783076 -25733961 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1529 25 31 0 0 chr6 123783416 123783448 -25733589 + AT_rich Low_complexity Low_complexity 1 32 0 3 1529 594 261 0 7 chr6 123783777 123783916 -25733121 - L1VL4 LINE L1 -5985 317 180 3 1529 2908 177 3 16 chr6 123783920 123784495 -25732542 + Lx2 LINE L1 4116 4683 -1200 3 1529 3824 193 25 40 chr6 123784495 123785577 -25731460 + Lx2 LINE L1 5036 6089 -1371 3 1529 1286 179 38 0 chr6 123785587 123785827 -25731210 + Lx2 LINE L1 6741 6989 -8 3 1529 1030 103 0 14 chr6 123785827 123785975 -25731062 + B1_Mus1 SINE Alu 3 148 0 3 1529 591 120 0 0 chr6 123786210 123786318 -25730719 + (TAGA)n Simple_repeat Simple_repeat 3 110 0 3 1529 960 143 0 0 chr6 123786336 123786483 -25730554 + B1_Mus1 SINE Alu 2 148 0 3 1529 252 100 0 0 chr6 123786485 123786525 -25730512 + (CAG)n Simple_repeat Simple_repeat 2 41 0 3 1529 551 278 110 13 chr6 123786561 123786871 -25730166 + L1M3 LINE L1 2355 2694 -3446 3 1529 257 278 55 7 chr6 123786946 123787091 -25729946 + L1M3 LINE L1 3861 4012 -2128 3 1529 231 284 68 0 chr6 123787122 123787196 -25729841 + L1_Mur3 LINE L1 4867 4945 -935 3 1529 230 258 0 29 chr6 123787327 123787395 -25729642 + GA-rich Low_complexity Low_complexity 2 67 0 3 1529 947 123 0 6 chr6 123787395 123787559 -25729478 + (GAA)n Simple_repeat Simple_repeat 3 165 0 3 1529 273 235 17 17 chr6 123787586 123787703 -25729334 + GA-rich Low_complexity Low_complexity 1 117 0 3 1529 489 278 71 30 chr6 123787748 123788015 -25729022 + L1M3 LINE L1 5148 5427 -737 3 1529 1140 279 11 7 chr6 123788315 123788722 -25728315 + Lx6 LINE L1 6226 6849 -611 3 1529 228 237 0 0 chr6 123788727 123788765 -25728272 - PB1D10 SINE Alu -29 88 51 3 1529 976 130 0 46 chr6 123788896 123789049 -25727988 - B1_Mus1 SINE Alu -1 147 2 3 1529 31 26 0 0 chr6 123789105 123789143 -25727894 + AT_rich Low_complexity Low_complexity 1 38 0 3 1529 22 94 0 0 chr6 123791482 123791546 -25725491 + AT_rich Low_complexity Low_complexity 1 64 0 3 1529 949 97 13 0 chr6 123792276 123792431 -25724606 - MusHAL1 LINE L1 -626 2086 1930 3 1529 4057 108 9 24 chr6 123792432 123793106 -25723931 + MusHAL1 LINE L1 529 1192 -1520 3 1529 1536 105 55 4 chr6 123793104 123793342 -25723695 + Lx2B LINE L1 5676 5925 -1075 3 1529 881 238 16 0 chr6 123793346 123793535 -25723502 + Lx2B LINE L1 6153 6344 -656 3 1529 5584 121 13 5 chr6 123793584 123794550 -25722487 + Lx3A LINE L1 5541 6511 -470 3 1529 1096 109 27 0 chr6 123794559 123794719 -25722318 - Lx3A LINE L1 -908 6073 5913 3 1529 378 0 0 0 chr6 123794719 123794761 -25722276 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3 1529 1096 109 27 0 chr6 123794761 123794783 -25722254 - Lx3A LINE L1 -1069 5912 5887 3 1529 2806 132 42 2 chr6 123794778 123795215 -25721822 + Lx3A LINE L1 6515 6970 -11 3 1529 441 0 0 0 chr6 123795215 123795264 -25721773 + (CATA)n Simple_repeat Simple_repeat 2 50 0 3 1529 234 342 0 37 chr6 123795353 123795375 -25721662 + B4A SINE B4 70 88 -204 3 1529 281 278 36 33 chr6 123795375 123795480 -25721557 + PB1D9 SINE Alu 4 110 -39 3 1529 31748 83 6 7 chr6 123795483 123800426 -25716611 + L1Md_F2 LINE L1 648 5585 -298 3 1529 7738 65 2 0 chr6 123800427 123801421 -25715616 + L1Md_F2 LINE L1 5587 6582 0 3 1529 314 132 19 0 chr6 123801426 123801479 -25715558 - MTC LTR MaLR -30 391 338 3 1529 261 75 0 0 chr6 123801506 123801546 -25715491 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1529 31 58 0 0 chr6 123801635 123801687 -25715350 + AT_rich Low_complexity Low_complexity 1 52 0 3 1529 720 151 17 0 chr6 123802358 123802477 -25714560 + B1_Mus1 SINE Alu 1 121 -27 3 1529 577 299 69 63 chr6 123802627 123802959 -25714078 + Lx8 LINE L1 7136 7469 -4 3 1529 1028 124 6 0 chr6 123804161 123804330 -25712707 + (TTCC)n Simple_repeat Simple_repeat 4 173 0 3 1529 333 0 0 0 chr6 123804347 123804384 -25712653 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 4 1529 212 391 14 0 chr6 123804398 123804467 -25712570 - ID4_ SINE ID -11 72 3 4 1529 238 341 35 35 chr6 123804486 123804571 -25712466 - PB1D10 SINE Alu -26 91 7 4 1529 2083 135 28 8 chr6 123804799 123805157 -25711880 - Lx5 LINE L1 -1099 5951 5587 4 1529 6277 200 29 30 chr6 123805170 123805828 -25711209 - L1_Mur2 LINE L1 -3137 2740 2061 4 1529 300 27 0 0 chr6 123805828 123805865 -25711172 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1529 6277 200 24 25 chr6 123805865 123806797 -25710240 - L1_Mur2 LINE L1 -3817 2060 1151 4 1529 838 285 24 24 chr6 123806798 123807050 -25709987 + Lx5 LINE L1 6074 6325 -725 4 1529 795 266 0 12 chr6 123807104 123807275 -25709762 + RMER13A LTR ERVK 692 860 0 4 1529 410 232 0 43 chr6 123807283 123807400 -25709637 + Lx2B LINE L1 6883 6994 -6 4 1529 2169 208 82 26 chr6 123807719 123808296 -25708741 - RLTR17 LTR ERVK -83 609 1 4 1529 1234 293 72 24 chr6 123808317 123809519 -25707518 + L1_Mur3 LINE L1 1469 2771 -3109 4 1529 2189 215 49 37 chr6 123809526 123810037 -25707000 + RLTR12B LTR ERVK 1 517 -11 4 1529 238 317 146 30 chr6 123810043 123810183 -25706854 + L1_Mur3 LINE L1 2793 2936 -3207 4 1529 960 227 43 14 chr6 123810183 123810393 -25706644 + B3 SINE B2 1 216 0 4 1529 542 285 65 30 chr6 123810393 123810883 -25706154 + L1_Mur3 LINE L1 2937 3496 -2647 4 1529 14083 105 15 10 chr6 123810881 123811612 -25705425 - L1VL2 LINE L1 -449 3166 2425 4 1529 2507 93 80 88 chr6 123811612 123812098 -25704939 - RLTR45 LTR ERVK 0 482 1 4 1529 14083 111 19 8 chr6 123812098 123814091 -25702946 - L1VL2 LINE L1 -1191 2424 413 4 1529 12512 158 15 16 chr6 123814086 123817312 -25699725 + Lx LINE L1 3440 6653 -1 4 1529 1473 74 0 0 chr6 123817317 123817507 -25699530 + B2_Mm1a SINE B2 1 190 -3 4 1529 1721 294 78 7 chr6 123817514 123818258 -25698779 + L1_Mur3 LINE L1 3464 4260 -1620 4 1529 291 54 0 0 chr6 123818342 123818379 -25698658 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1529 333 0 0 0 chr6 123818381 123818418 -25698619 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1529 343 316 70 26 chr6 123818420 123818576 -25698461 + L1M2 LINE L1 4411 4573 -1570 4 1529 30529 98 14 27 chr6 123818592 123821458 -25695579 + L1Md_F2 LINE L1 380 3252 -2631 4 1529 2672 107 121 18 chr6 123821458 123821895 -25695142 - RLTR45 LTR ERVK 0 482 1 4 1529 30529 84 5 29 chr6 123821895 123823263 -25693774 + L1Md_F2 LINE L1 3253 4526 -1357 4 1529 3284 46 2 0 chr6 123823263 123823658 -25693379 + MTA_Mm LTR MaLR 1 396 0 4 1529 30529 84 5 29 chr6 123823658 123824724 -25692313 + L1Md_F2 LINE L1 4527 5586 -297 4 1529 6969 85 23 12 chr6 123824725 123825709 -25691328 + L1Md_F2 LINE L1 5588 6582 0 4 1529 9804 146 21 48 chr6 123825773 123828045 -25688992 + Lx4A LINE L1 668 2905 -2972 4 1529 4938 147 10 4 chr6 123828045 123828871 -25688166 + Lx2A1 LINE L1 6176 7006 -2 4 1529 9804 137 15 62 chr6 123828871 123829075 -25687962 + Lx4A LINE L1 2906 3080 -2797 4 1529 1869 178 15 83 chr6 123829076 123829474 -25687563 - RLTR1B LTR ERV1 0 512 142 4 1529 4901 138 22 24 chr6 123829565 123829705 -25687332 + Lx4A LINE L1 3077 3210 -2667 4 1529 2097 131 168 5 chr6 123829705 123830081 -25686956 + RLTR9B LTR ERVK 1 437 0 4 1529 4901 138 22 24 chr6 123830081 123830882 -25686155 + Lx4A LINE L1 3211 4016 -1861 4 1529 1018 138 11 32 chr6 123830884 123831071 -25685966 - LTRIS3 LTR ERV1 -2 510 328 4 1529 8447 149 24 163 chr6 123831528 123832240 -25684797 + Lx4A LINE L1 4013 4729 -1148 4 1529 207 0 0 0 chr6 123832240 123832263 -25684774 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 4 1529 8447 166 45 52 chr6 123832263 123832856 -25684181 + Lx4A LINE L1 4730 5304 -1754 4 1529 560 235 46 44 chr6 123832856 123833037 -25684000 + RLTR43A LTR ERVK 202 364 0 4 1529 8447 166 45 52 chr6 123833037 123834844 -25682193 + Lx4A LINE L1 5305 7058 0 4 1529 1202 0 0 7 chr6 123834844 123834913 -25682124 + (GAA)n Simple_repeat Simple_repeat 1 69 0 4 1529 1202 95 0 6 chr6 123834913 123835093 -25681944 + (GGA)n Simple_repeat Simple_repeat 2 180 0 4 1529 1202 0 0 5 chr6 123835093 123835191 -25681846 + (GAA)n Simple_repeat Simple_repeat 1 97 0 4 1529 258 353 21 110 chr6 123835602 123835793 -25681244 - RMER5 LTR ERV1 -118 416 243 4 1529 668 300 9 50 chr6 123835941 123836264 -25680773 - L1_Rod LINE L1 -863 4984 4675 4 1529 3172 227 57 19 chr6 123837259 123838032 -25679005 - Lx6 LINE L1 -345 7115 6314 4 1529 309 247 31 51 chr6 123838200 123838298 -25678739 + RLTR24 LTR ERV1 381 476 -53 4 1529 6696 181 15 31 chr6 123838298 123839502 -25677535 - Lx2B LINE L1 -36 6964 5782 4 1529 5237 116 50 12 chr6 123839502 123840356 -25676681 + RMER17D LTR ERVK 1 887 -2 4 1529 6696 198 37 18 chr6 123840356 123841113 -25675924 - Lx2B LINE L1 -1219 5781 4985 4 1529 441 95 0 0 chr6 123841113 123841176 -25675861 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 4 1529 4067 204 44 13 chr6 123841176 123841278 -25675759 - Lx2B LINE L1 -893 4984 4878 4 1529 251 292 0 0 chr6 123841281 123841346 -25675691 + GA-rich Low_complexity Low_complexity 4 68 0 4 1529 5236 85 1 1 chr6 123841913 123842617 -25674420 - L1_Mus2 LINE L1 -3 6563 5860 4 1529 395 246 7 47 chr6 123842802 123842951 -25674086 - Lx4A LINE L1 -2 7056 6914 4 1529 838 185 6 55 chr6 123842955 123843138 -25673899 - Lx4A LINE L1 -247 6811 6638 4 1529 2878 202 22 2 chr6 123843153 123843754 -25673283 - Lx4A LINE L1 -504 6554 5942 4 1529 5253 167 23 10 chr6 123844059 123845136 -25671901 - Lx4A LINE L1 -1139 5919 4823 4 1529 415 17 51 0 chr6 123845156 123845215 -25671822 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 4 1529 4102 206 32 2 chr6 123846018 123846978 -25670059 + Lx2B LINE L1 4886 5874 -12 4 1529 2961 179 9 3 chr6 123846986 123847568 -25669469 + Lx2B LINE L1 6080 6664 -336 4 1529 387 158 236 0 chr6 123847572 123847699 -25669338 + Lx2B LINE L1 6842 6998 -2 4 1529 247 281 20 50 chr6 123847756 123847857 -25669180 + RLTR30 LTR ERV1 106 203 -176 4 1529 2908 233 98 18 chr6 123847939 123848580 -25668457 + Lx6 LINE L1 6329 7025 -671 4 1529 243 0 0 0 chr6 123848580 123848607 -25668430 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1529 2908 251 49 5 chr6 123848607 123848863 -25668174 + Lx6 LINE L1 7015 7282 -178 4 1529 1282 13 0 0 chr6 123849325 123849479 -25667558 - L1Md_A LINE L1 0 6582 6429 4 1529 643 291 31 48 chr6 123849603 123849892 -25667145 + Lx7 LINE L1 6950 7233 -463 4 1529 3729 39 0 0 chr6 123850537 123850979 -25666058 + L1Md_T LINE L1 6141 6582 0 4 1529 546 179 9 9 chr6 123850987 123851100 -25665937 + Lx5 LINE L1 6350 6462 -588 4 1529 19306 124 50 11 chr6 123851106 123852486 -25664551 - L1_Mus3 LINE L1 -5 6633 5233 4 1529 360 0 0 0 chr6 123852486 123852526 -25664511 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1529 19306 157 140 11 chr6 123852526 123856626 -25660411 - L1_Mus3 LINE L1 -651 5232 416 4 1529 1670 253 73 29 chr6 123856666 123857224 -25659813 + Lx5 LINE L1 6456 7038 -12 4 1529 297 0 0 0 chr6 123857225 123857258 -25659779 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4 1529 324 0 0 0 chr6 123857746 123857782 -25659255 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1529 307 253 14 27 chr6 123857864 123858038 -25658999 - Lx9 LINE L1 -1668 5976 5770 4 1529 383 260 131 10 chr6 123858043 123858249 -25658788 - L1_Rod LINE L1 -3815 2032 1802 4 1529 373 254 33 53 chr6 123858219 123858369 -25658668 - Lx6 LINE L1 -10 7450 7304 4 1529 1518 183 0 0 chr6 123858351 123858643 -25658394 + Lx4A LINE L1 5655 5925 -246 4 1529 2659 217 17 2 chr6 123858956 123859547 -25657490 + Lx4A LINE L1 5937 6536 -522 4 1529 254 257 29 0 chr6 123859598 123859668 -25657369 + CT-rich Low_complexity Low_complexity 2 73 0 4 1529 5288 196 6 12 chr6 123859673 123861493 -25655544 + Lx2B LINE L1 4885 6694 -306 4 1529 1090 115 34 6 chr6 123861493 123861668 -25655369 - BGLII LTR ERVK 0 421 242 4 1529 464 273 58 11 chr6 123861756 123861930 -25655107 - B3A SINE B2 -15 183 2 4 1529 965 333 62 28 chr6 123862072 123862536 -25654501 + RMER5 LTR ERV1 44 523 -11 4 1529 599 327 14 14 chr6 123862558 123862837 -25654200 + L1_Rod LINE L1 4674 4952 -895 4 1530 326 313 91 51 chr6 123863066 123863241 -25653796 + RMER5 LTR ERV1 243 424 -110 4 1530 237 128 0 41 chr6 123863687 123863736 -25653301 - Lx4A LINE L1 0 7058 7012 4 1530 524 206 37 49 chr6 123863916 123864079 -25652958 + RLTR43A LTR ERVK 201 361 -3 4 1530 2508 102 6 0 chr6 123864247 123864601 -25652436 + L1_Mus1 LINE L1 6212 6567 0 4 1530 1079 191 118 111 chr6 123865134 123865523 -25651514 + RLTR9C LTR ERVK 1 392 -1 4 1530 1943 162 144 64 chr6 123865529 123866063 -25650974 + ETnERV2-int LTR ERVK 240 816 -4590 4 1530 4515 192 22 57 chr6 123866068 123867132 -25649905 + ETnERV2-int LTR ERVK 1721 2746 -4660 4 1530 2501 184 12 24 chr6 123867133 123867723 -25649314 + RMER16-int LTR ERVK 2303 2839 -2567 4 1530 2162 255 22 14 chr6 123867746 123868448 -25648589 + RMER16-int LTR ERVK 4083 4531 -2875 4 1530 230 184 0 0 chr6 123868479 123868517 -25648520 - RLTR13D3 LTR ERVK -1076 38 1 4 1530 553 164 30 11 chr6 123868555 123868680 -25648357 + RMER16-int LTR ERVK 5680 5793 -1613 4 1530 251 75 25 0 chr6 123868678 123868718 -25648319 + RMER16-int LTR ERVK 3660 3700 -1706 4 1530 207 0 0 0 chr6 123868742 123868765 -25648272 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1530 958 168 6 12 chr6 123868767 123868936 -25648101 + RMER16-int LTR ERVK 3809 3976 -1430 4 1530 306 0 0 0 chr6 123869443 123869477 -25647560 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 4 1530 1792 222 30 7 chr6 123870159 123870562 -25646475 + ETnERV2-int LTR ERVK 6647 7058 -348 4 1530 594 198 32 64 chr6 123870720 123870912 -25646125 + RLTR43A LTR ERVK 186 365 0 4 1530 4733 220 48 7 chr6 123870912 123872100 -25644937 - Lx4A LINE L1 -38 7020 5784 4 1530 1163 170 13 4 chr6 123872111 123872336 -25644701 - Lx2 LINE L1 0 6997 6771 4 1530 5649 157 30 1 chr6 123872336 123873521 -25643516 - Lx2 LINE L1 -359 6638 5418 4 1530 3908 140 31 6 chr6 123873520 123874302 -25642735 - MusHAL1 LINE L1 -1796 916 116 4 1530 6885 78 30 4 chr6 123874309 123875945 -25641092 - L1Md_F2 LINE L1 -12 6570 4896 4 1530 1820 80 0 4 chr6 123875945 123876210 -25640827 + L1_Mm LINE L1 3959 4222 -1661 4 1530 1091 43 0 0 chr6 123876208 123876348 -25640689 - L1_Mm LINE L1 -426 5457 5318 4 1530 4397 79 2 0 chr6 123876346 123876969 -25640068 + L1_Mm LINE L1 4636 5259 -624 4 1530 2294 172 34 28 chr6 123876980 123877511 -25639526 - L1_Mur2 LINE L1 -1714 4163 3630 4 1530 321 245 39 0 chr6 123877572 123877674 -25639363 - L1_Mur3 LINE L1 -1623 4257 4152 4 1530 1474 220 74 74 chr6 123877731 123878178 -25638859 + RLTR13A LTR ERVK 1 447 -408 4 1530 1098 155 20 15 chr6 123878181 123878384 -25638653 + RLTR13A LTR ERVK 690 893 0 4 1530 3160 133 75 66 chr6 123878399 123879542 -25637495 + L1Md_A LINE L1 217 1497 -4386 4 1530 4023 164 24 2 chr6 123879538 123880325 -25636712 - L1Md_A LINE L1 -5689 1035 232 4 1530 1742 237 12 16 chr6 123880326 123880819 -25636218 + Lx6 LINE L1 5274 5764 -116 4 1530 594 282 39 35 chr6 123880871 123881154 -25635883 + Lx6 LINE L1 5973 6256 -1204 4 1530 339 296 45 61 chr6 123881281 123881479 -25635558 + RLTR46 LTR ERVK 126 320 0 4 1530 1011 294 15 8 chr6 123881479 123881843 -25635194 + Lx6 LINE L1 6277 6859 -601 4 1530 33 43 0 0 chr6 123884558 123884605 -25632432 + AT_rich Low_complexity Low_complexity 1 47 0 4 1530 22 35 0 0 chr6 123884643 123884672 -25632365 + AT_rich Low_complexity Low_complexity 1 29 0 4 1530 6791 57 0 1 chr6 123884816 123885715 -25631322 - L1_Mm LINE L1 -547 5336 4439 4 1530 2394 258 34 14 chr6 123886103 123886947 -25630090 + Lx2B LINE L1 5774 6978 -22 4 1530 1596 166 29 10 chr6 123887069 123887380 -25629657 + Lx2B LINE L1 5587 5903 -1097 4 1530 4287 180 12 11 chr6 123887451 123888271 -25628766 + Lx2B LINE L1 6170 6990 -10 4 1530 559 225 43 21 chr6 123888318 123888459 -25628578 + B1_Mur1 SINE Alu 5 148 -1 4 1530 32 57 0 0 chr6 123888997 123889050 -25627987 + AT_rich Low_complexity Low_complexity 1 53 0 4 1530 584 292 0 7 chr6 123889794 123889932 -25627105 - B1_Mur1 SINE Alu -3 146 10 4 1530 446 330 27 16 chr6 123890238 123890426 -25626611 + Lx8 LINE L1 7141 7330 -143 5 1530 432 0 0 0 chr6 123890426 123890474 -25626563 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1530 612 160 0 0 chr6 123890475 123890594 -25626443 + GA-rich Low_complexity Low_complexity 2 120 0 5 1530 27573 127 10 43 chr6 123890670 123892856 -25624181 + L1_Mus2 LINE L1 229 2350 -3533 5 1530 185 0 40 0 chr6 123892856 123892881 -25624156 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1530 27573 113 14 13 chr6 123892881 123897101 -25619936 + L1_Mus2 LINE L1 2351 6565 -1 5 1530 972 211 74 42 chr6 123897198 123897407 -25619630 + RLTR22_Mur LTR ERVK 1590 1770 -78 5 1530 210 91 0 0 chr6 123897407 123897440 -25619597 + (CCA)n Simple_repeat Simple_repeat 2 34 0 5 1530 972 202 72 44 chr6 123897440 123897500 -25619537 + RLTR22_Mur LTR ERVK 1771 1844 -4 5 1530 921 123 7 0 chr6 123897728 123897866 -25619171 + B1_Mus1 SINE Alu 9 147 -1 5 1530 426 284 53 94 chr6 123897729 123897900 -25619137 + B4 SINE B4 94 257 -35 5 1530 32 43 0 0 chr6 123897900 123897946 -25619091 + AT_rich Low_complexity Low_complexity 1 46 0 5 1530 969 106 13 0 chr6 123897999 123898150 -25618887 + Lx3A LINE L1 6534 6686 -295 5 1530 1685 128 105 149 chr6 123898152 123898649 -25618388 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1530 633 130 241 6 chr6 123898651 123898813 -25618224 + IAPEz-int LTR ERVK 3 202 -1785 5 1530 228 235 20 0 chr6 123898813 123898864 -25618173 + RLTR27 LTR ERVK 223 274 -35 5 1530 237 321 0 0 chr6 123898891 123898944 -25618093 + RLTR27 LTR ERVK 223 275 -34 5 1530 16291 106 28 25 chr6 123898944 123901542 -25615495 + IAPEz-int LTR ERVK 168 2774 -3707 5 1530 2977 20 0 0 chr6 123901540 123901897 -25615140 + IAPEz-int LTR ERVK 4001 4357 -2124 5 1530 5465 75 14 3 chr6 123901888 123902652 -25614385 + IAPEz-int LTR ERVK 5709 6481 0 5 1530 1782 129 104 116 chr6 123902652 123903133 -25613904 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1530 1337 169 75 14 chr6 123903133 123903415 -25613622 + Lx3A LINE L1 6683 6981 0 5 1530 213 355 17 76 chr6 123903648 123903767 -25613270 + PB1D9 SINE Alu 1 112 -8 5 1530 566 28 14 0 chr6 123903774 123903846 -25613191 + (GAGAA)n Simple_repeat Simple_repeat 4 76 0 5 1530 246 315 55 0 chr6 123904343 123904416 -25612621 + ID2 SINE ID 5 81 -2 5 1530 229 360 53 53 chr6 123904416 123904437 -25612600 + ID_B1 SINE B4 5 98 -126 5 1530 1491 232 23 55 chr6 123905186 123905620 -25611417 + RMER1B Other Other 535 954 -112 5 1530 539 219 0 28 chr6 123905618 123905759 -25611278 + RMER1B Other Other 919 1055 -11 5 1530 735 12 0 0 chr6 123906545 123906629 -25610408 + (TTTC)n Simple_repeat Simple_repeat 3 86 0 5 1530 1193 49 0 0 chr6 123906630 123906772 -25610265 - B1_Mus1 SINE Alu -6 142 1 5 1530 370 314 0 19 chr6 123907145 123907252 -25609785 + PB1 SINE Alu 1 105 -22 5 1530 634 186 85 8 chr6 123907328 123907458 -25609579 - B1_Mus2 SINE Alu -6 141 2 5 1530 21 36 0 0 chr6 123907949 123907977 -25609060 + AT_rich Low_complexity Low_complexity 1 28 0 5 1530 1109 158 182 42 chr6 123908443 123908707 -25608330 + RMER6A LTR ERVK 1 301 -455 5 1530 878 263 41 45 chr6 123908714 123909098 -25607939 - RMER12 LTR ERVK 0 1322 996 5 1530 834 64 0 0 chr6 123909115 123909224 -25607813 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 5 1530 1103 122 0 11 chr6 123909224 123909406 -25607631 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 5 1530 21 89 0 0 chr6 123910698 123910754 -25606283 + AT_rich Low_complexity Low_complexity 1 56 0 5 1530 315 319 75 29 chr6 123911231 123911405 -25605632 + L1MCa LINE L1 1617 1798 -4710 5 1530 403 286 125 0 chr6 123911643 123911867 -25605170 + L1MCa LINE L1 2145 2396 -4112 5 1530 242 339 123 4 chr6 123911914 123912142 -25604895 + Lx8 LINE L1 7219 7473 0 5 1530 241 223 94 28 chr6 123912154 123912260 -25604777 + L1MCa LINE L1 2431 2543 -3778 5 1530 204 269 0 0 chr6 123912270 123912337 -25604700 + A-rich Low_complexity Low_complexity 3 69 0 5 1530 6368 119 51 13 chr6 123912348 123913508 -25603529 - MusHAL1 LINE L1 -297 2415 1212 5 1530 4931 149 22 33 chr6 123913506 123914416 -25602621 - L1VL4 LINE L1 -5383 919 20 5 1530 3757 167 11 4 chr6 123914463 123915435 -25601602 - Lx LINE L1 -642 6012 5032 5 1530 3338 132 35 8 chr6 123915422 123916054 -25600983 + MusHAL1 LINE L1 614 1262 -1450 5 1530 583 128 11 1 chr6 123916065 123916162 -25600875 + BGLII_Mus LTR ERVK 229 422 0 5 1530 323 78 57 86 chr6 123916162 123916232 -25600805 + Lx6 LINE L1 4293 4360 -1520 5 1530 255 31 0 0 chr6 123916233 123916265 -25600772 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1530 603 40 0 0 chr6 123916265 123916339 -25600698 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 5 1530 308 143 0 0 chr6 123916339 123916388 -25600649 + Lx6 LINE L1 4456 4504 -1376 5 1530 1356 202 29 29 chr6 123916393 123916771 -25600266 + Lx6 LINE L1 4662 5039 -841 5 1530 1996 247 27 39 chr6 123916776 123917294 -25599743 + RLTR20B3 LTR ERVK 22 533 -44 5 1530 2503 224 67 4 chr6 123917327 123918018 -25599019 + Lx6 LINE L1 5037 5770 -110 5 1530 919 269 47 38 chr6 123918077 123918696 -25598341 + Lx6 LINE L1 5986 6859 -601 5 1530 38 39 0 0 chr6 123921047 123921099 -25595938 + AT_rich Low_complexity Low_complexity 1 52 0 5 1530 183 42 0 0 chr6 123921150 123921174 -25595863 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 1530 568 318 13 13 chr6 123921640 123921790 -25595247 + B4A SINE B4 1 150 -142 5 1530 278 360 23 0 chr6 123921793 123921879 -25595158 + B4A SINE B4 63 150 -142 5 1530 274 372 23 0 chr6 123921882 123921968 -25595069 + B4A SINE B4 63 150 -142 5 1530 322 337 23 0 chr6 123921971 123922057 -25594980 + B4A SINE B4 63 150 -142 5 1530 542 328 78 11 chr6 123922060 123922251 -25594786 + B4A SINE B4 63 266 -26 5 1530 255 254 22 0 chr6 123922282 123922420 -25594617 + (CA)n Simple_repeat Simple_repeat 2 142 0 5 1530 276 194 15 0 chr6 123922422 123922489 -25594548 + GA-rich Low_complexity Low_complexity 1 68 0 5 1530 309 331 81 20 chr6 123923108 123923256 -25593781 - Charlie12 DNA MER1_type -2713 160 4 5 1530 2337 267 27 20 chr6 123923268 123924122 -25592915 + Lx2B LINE L1 5774 6978 -22 5 1530 1838 162 18 0 chr6 123924240 123924573 -25592464 + Lx2B LINE L1 5587 5925 -1075 5 1530 3921 189 36 19 chr6 123924596 123925393 -25591644 + Lx2B LINE L1 6171 6981 -19 5 1530 522 242 45 8 chr6 123925448 123925581 -25591456 + B1_Mur2 SINE Alu 5 142 -7 5 1530 30 0 0 0 chr6 123926678 123926708 -25590329 + AT_rich Low_complexity Low_complexity 1 30 0 5 1530 683 241 0 21 chr6 123926915 123927059 -25589978 - B1_Mur1 SINE Alu 0 149 9 5 1530 223 240 0 51 chr6 123927238 123927317 -25589720 + A-rich Low_complexity Low_complexity 2 76 0 5 1530 363 314 57 10 chr6 123927367 123927553 -25589484 + Lx8 LINE L1 7141 7336 -137 5 1530 471 18 0 0 chr6 123927553 123927609 -25589428 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1530 188 202 0 25 chr6 123927633 123927714 -25589323 + (CAGA)n Simple_repeat Simple_repeat 2 80 0 5 1530 226 239 0 15 chr6 123927745 123927813 -25589224 + Lx8 LINE L1 7403 7469 -4 5 1530 24 0 0 0 chr6 123928704 123928728 -25588309 + AT_rich Low_complexity Low_complexity 1 24 0 5 1530 255 256 0 0 chr6 123928869 123928951 -25588086 - Lx3B LINE L1 -1 6972 6891 5 1530 405 86 0 0 chr6 123928973 123929031 -25588006 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 5 1530 4781 256 71 76 chr6 123929078 123929472 -25587565 + L1_Mur2 LINE L1 2363 2763 -3114 5 1530 1697 242 48 36 chr6 123929472 123929994 -25587043 + RLTR12B LTR ERVK 1 528 0 5 1530 4781 256 71 76 chr6 123929994 123930107 -25586930 + L1_Mur2 LINE L1 2764 2901 -2976 5 1530 711 291 48 0 chr6 123930107 123930313 -25586724 + B3 SINE B2 1 216 0 5 1530 4781 256 71 76 chr6 123930313 123931543 -25585494 + L1_Mur2 LINE L1 2902 4148 -1729 5 1530 1522 147 49 64 chr6 123931543 123931870 -25585167 - RLTRETN_Mm LTR ERVK 0 322 1 5 1530 4781 256 71 76 chr6 123931870 123933587 -25583450 + L1_Mur2 LINE L1 4149 5801 -76 5 1530 3394 179 14 23 chr6 123933569 123934397 -25582640 + L1VL4 LINE L1 244 1028 -5307 5 1530 1338 60 0 0 chr6 123934391 123934573 -25582464 - L1_Mm LINE L1 -995 4888 4707 5 1530 3623 70 0 0 chr6 123934580 123935081 -25581956 - L1_Mm LINE L1 -1424 4459 3959 5 1530 4930 78 0 3 chr6 123935081 123935773 -25581264 + L1Md_F2 LINE L1 4896 5585 -298 5 1530 6871 83 35 5 chr6 123935774 123936729 -25580308 + L1Md_F2 LINE L1 5587 6569 -13 5 1530 3950 142 25 8 chr6 123936734 123937528 -25579509 + MusHAL1 LINE L1 109 916 -1796 5 1530 5604 155 39 2 chr6 123937527 123938715 -25578322 + Lx2 LINE L1 5418 6647 -350 5 1530 1136 178 9 0 chr6 123938705 123938930 -25578107 + Lx2 LINE L1 6771 6997 0 5 1530 5003 215 46 3 chr6 123938941 123940127 -25576910 + Lx4A LINE L1 5784 7020 -38 5 1530 581 198 34 65 chr6 123940127 123940322 -25576715 - RLTR43A LTR ERVK 0 365 182 5 1530 1945 210 21 3 chr6 123940495 123940882 -25576155 - ETnERV2-int LTR ERVK -367 7039 6646 5 1530 2861 43 3 0 chr6 123940997 123941342 -25575695 - ORR1A0 LTR MaLR 0 346 1 5 1530 564 109 27 18 chr6 123941353 123941465 -25575572 + L1Md_F2 LINE L1 6469 6581 -1 5 1530 7511 111 19 0 chr6 123941484 123942712 -25574325 - MusHAL1 LINE L1 -299 2413 1163 5 1530 3646 121 11 4 chr6 123942713 123943260 -25573777 + L1_Mus3 LINE L1 6087 6637 -1 5 1530 555 181 8 8 chr6 123943270 123943387 -25573650 - Lx5 LINE L1 -584 6466 6350 5 1530 540 302 24 56 chr6 123944045 123944294 -25572743 - Lx7 LINE L1 -463 7233 6993 5 1530 225 128 82 41 chr6 123944295 123944344 -25572693 - MamGypLTR1a LTR Gypsy -648 136 86 5 1530 2974 261 51 5 chr6 123944914 123945170 -25571867 - Lx6 LINE L1 -177 7283 7016 5 1530 1023 73 0 0 chr6 123945170 123945307 -25571730 + (CTTTG)n Simple_repeat Simple_repeat 2 138 0 5 1530 2974 236 99 18 chr6 123945307 123945947 -25571090 - Lx6 LINE L1 -670 7026 6329 5 1530 411 167 246 0 chr6 123946187 123946313 -25570724 - Lx2B LINE L1 -2 6998 6842 5 1530 5375 189 38 3 chr6 123946317 123948029 -25569008 - Lx2B LINE L1 -336 6664 4886 5 1530 213 39 0 0 chr6 123948835 123948861 -25568176 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1530 1530 241 55 26 chr6 123948870 123949249 -25567788 - Lx4A LINE L1 -4 7054 6665 5 1530 33950 82 14 7 chr6 123949215 123954907 -25562130 - L1Md_F2 LINE L1 -471 6111 380 5 1530 1752 274 118 23 chr6 123954923 123955080 -25561957 - L1_Mur3 LINE L1 -1338 4542 4379 5 1530 459 0 0 0 chr6 123955080 123955131 -25561906 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1530 453 36 0 0 chr6 123955133 123955188 -25561849 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1530 1752 274 118 23 chr6 123955188 123956013 -25561024 - L1_Mur3 LINE L1 -1502 4378 3464 5 1530 398 157 235 0 chr6 123956020 123956122 -25560915 - Lx4A LINE L1 0 6654 6529 5 1530 11525 171 16 3 chr6 123956129 123958277 -25558760 - Lx LINE L1 -999 5655 3484 5 1530 231 36 0 0 chr6 123958277 123958305 -25558732 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5 1530 11525 175 14 3 chr6 123958305 123958336 -25558701 - Lx LINE L1 -2394 3483 3443 5 1530 3837 115 25 1 chr6 123958340 123959307 -25557730 + L1VL2 LINE L1 417 1411 -2204 5 1530 4726 22 1 0 chr6 123959303 123960033 -25557004 - L1Md_A LINE L1 -432 6150 5420 5 1530 3615 34 2 0 chr6 123960033 123960470 -25556567 + L1Md_T LINE L1 6145 6582 0 5 1530 10583 106 28 11 chr6 123960470 123962209 -25554828 + L1VL2 LINE L1 1398 3166 -449 5 1530 1124 282 107 58 chr6 123962232 123962703 -25554334 - L1_Mur3 LINE L1 -2452 3428 2903 5 1530 834 259 45 0 chr6 123962703 123962904 -25554133 - B3 SINE B2 -6 210 1 5 1530 1124 282 107 58 chr6 123962904 123963039 -25553998 - L1_Mur3 LINE L1 -2978 2902 2774 5 1530 2137 199 49 53 chr6 123963039 123963569 -25553468 - RLTR12B LTR ERVK 0 528 1 5 1530 1124 282 107 58 chr6 123963569 123964061 -25552976 - L1_Mur3 LINE L1 -3107 2773 2275 5 1530 35232 67 12 8 chr6 123964059 123970174 -25546863 - L1Md_F3 LINE L1 -14 6570 450 6 1530 258 228 0 0 chr6 123970180 123970237 -25546800 - MusHAL1 LINE L1 -1636 1076 1020 6 1530 812 290 40 22 chr6 123970456 123970955 -25546082 - L1_Rod LINE L1 -3917 1969 1469 6 1530 2180 219 76 29 chr6 123970976 123971558 -25545479 + RLTR17 LTR ERVK 1 609 -83 6 1530 987 109 0 0 chr6 123971590 123971764 -25545273 + (TA)n Simple_repeat Simple_repeat 2 175 0 6 1530 244 308 85 21 chr6 123971788 123971977 -25545060 - L1_Rod LINE L1 -4444 1403 1203 6 1530 427 223 0 43 chr6 123972056 123972173 -25544864 - Lx2B LINE L1 -6 6994 6883 6 1530 805 247 6 12 chr6 123972184 123972352 -25544685 - RMER13A LTR ERVK -2 858 692 6 1530 825 289 24 24 chr6 123972406 123972658 -25544379 - Lx5 LINE L1 -725 6325 6074 6 1530 810 207 9 6 chr6 123972659 123972921 -25544116 + L1_Mur2 LINE L1 1151 1414 -4463 6 1530 1380 136 36 8 chr6 123972916 123973168 -25543869 + Lx5 LINE L1 5693 5951 -1099 6 1530 246 329 35 35 chr6 123973392 123973477 -25543560 + PB1D10 SINE Alu 7 91 -26 6 1530 223 377 14 0 chr6 123973496 123973565 -25543472 + ID4_ SINE ID 3 72 -11 6 1530 333 0 0 0 chr6 123973579 123973616 -25543421 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 6 1530 1097 109 0 17 chr6 123973635 123973812 -25543225 + (GGAA)n Simple_repeat Simple_repeat 4 177 0 6 1530 581 312 60 54 chr6 123975022 123975354 -25541683 - Lx8 LINE L1 -4 7469 7136 6 1530 737 151 17 0 chr6 123975504 123975623 -25541414 - B1_Mus1 SINE Alu -27 121 1 6 1530 23 78 0 0 chr6 123976301 123976352 -25540685 + AT_rich Low_complexity Low_complexity 1 51 0 6 1530 349 94 19 0 chr6 123976478 123976531 -25540506 + MTC LTR MaLR 338 391 -30 6 1530 31213 80 43 5 chr6 123976531 123982250 -25534787 - L1Md_F2 LINE L1 0 6582 631 6 1530 261 282 34 34 chr6 123982253 123982341 -25534696 - PB1D9 SINE Alu -29 91 4 6 1530 220 355 0 37 chr6 123982281 123982363 -25534674 - B4A SINE B4 -144 148 70 6 1530 558 43 0 0 chr6 123982452 123982521 -25534516 + (TATG)n Simple_repeat Simple_repeat 2 70 0 6 1530 2946 121 41 0 chr6 123982521 123982959 -25534078 - Lx3A LINE L1 -11 6970 6515 6 1530 1184 107 10 5 chr6 123982954 123983151 -25533886 + Lx3_Mus LINE L1 5886 6083 -926 6 1530 5753 115 11 6 chr6 123983157 123984125 -25532912 - Lx3A LINE L1 -470 6511 5541 6 1530 4091 175 77 8 chr6 123984165 123984755 -25532282 - Lx2B LINE L1 -11 6989 6346 6 1530 495 0 0 0 chr6 123984755 123984810 -25532227 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1530 4091 175 77 8 chr6 123984810 123985002 -25532035 - Lx2B LINE L1 -655 6345 6154 6 1530 2087 137 38 1 chr6 123985006 123985355 -25531682 - Lx2B LINE L1 -1075 5925 5587 6 1530 5211 121 9 24 chr6 123985364 123985756 -25531281 - MusHAL1 LINE L1 -1289 1423 1038 6 1530 3241 74 21 84 chr6 123985756 123986270 -25530767 + RLTR45 LTR ERVK 1 482 0 6 1530 5211 121 9 24 chr6 123986270 123986786 -25530251 - MusHAL1 LINE L1 -1675 1037 529 6 1530 953 109 6 0 chr6 123986787 123986943 -25530094 + MusHAL1 LINE L1 1930 2086 -626 6 1530 245 235 18 113 chr6 123987124 123987292 -25529745 - Lx2B LINE L1 -32 6968 6817 6 1530 21 0 0 0 chr6 123987646 123987667 -25529370 + AT_rich Low_complexity Low_complexity 1 21 0 6 1530 22 94 0 0 chr6 123987689 123987753 -25529284 + AT_rich Low_complexity Low_complexity 1 64 0 6 1530 892 153 0 0 chr6 123990207 123990338 -25526699 + B1_Mus1 SINE Alu 2 132 -16 6 1530 228 237 0 0 chr6 123990377 123990415 -25526622 + PB1D10 SINE Alu 51 88 -29 6 1530 1233 265 13 10 chr6 123990420 123990827 -25526210 - Lx6 LINE L1 -611 6849 6226 6 1530 490 276 81 24 chr6 123991133 123991399 -25525638 - L1M3 LINE L1 -745 5398 5080 6 1530 273 98 0 0 chr6 123991442 123991483 -25525554 + (TCC)n Simple_repeat Simple_repeat 2 42 0 6 1530 318 165 12 25 chr6 123991488 123991569 -25525468 + CT-rich Low_complexity Low_complexity 3 82 0 6 1530 694 188 0 12 chr6 123991603 123991775 -25525262 + CT-rich Low_complexity Low_complexity 2 171 0 6 1530 257 328 39 39 chr6 123991853 123991980 -25525057 - L1_Mur3 LINE L1 -887 4993 4867 6 1530 236 300 28 7 chr6 123992015 123992156 -25524881 - L1M3 LINE L1 -2136 4004 3861 6 1530 494 289 104 34 chr6 123992231 123992573 -25524464 - L1M3 LINE L1 -3446 2694 2327 6 1530 237 33 0 0 chr6 123992573 123992603 -25524434 + (CTG)n Simple_repeat Simple_repeat 3 32 0 6 1530 494 289 104 34 chr6 123992603 123992615 -25524422 - L1M3 LINE L1 -3814 2326 2315 6 1530 1072 71 0 21 chr6 123992629 123992773 -25524264 - B1_Mus1 SINE Alu -6 142 2 6 1530 702 113 0 0 chr6 123992791 123992915 -25524122 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 6 1530 210 319 27 14 chr6 123992932 123993005 -25524032 - ID4_ SINE ID -8 75 2 6 1530 1045 96 0 14 chr6 123993146 123993294 -25523743 - B1_Mus1 SINE Alu 0 148 3 6 191 5226 191 196 15 chr6 123993294 123995354 -25521683 - Lx2 LINE L1 -76 6921 4112 6 1531 593 268 0 7 chr6 123995360 123995499 -25521538 + L1VL4 LINE L1 180 317 -5985 6 1531 32 0 0 0 chr6 123995828 123995860 -25521177 + AT_rich Low_complexity Low_complexity 1 32 0 6 1531 436 298 16 21 chr6 123996706 123996898 -25520139 - L1MCa LINE L1 -1454 4867 4677 6 1531 289 194 53 40 chr6 123997171 123997246 -25519791 - L1MCa LINE L1 -3778 2543 2468 6 1531 410 292 49 27 chr6 123997999 123998224 -25518813 - L1MCa LINE L1 -4665 1843 1614 6 1531 2563 320 55 33 chr6 123998479 123999547 -25517490 - Lx8 LINE L1 -75 7398 6307 6 1531 21 0 0 0 chr6 123999555 123999576 -25517461 + AT_rich Low_complexity Low_complexity 1 21 0 6 1531 3077 75 2 0 chr6 123999588 123999987 -25517050 + MTB LTR MaLR 1 400 0 6 1531 185 310 54 65 chr6 124000523 124000616 -25516421 - MIR SINE MIR -92 116 25 1 1531 1902 216 23 11 chr6 124001239 124001674 -25515363 - RMER6A LTR ERVK -14 742 303 2 1531 1986 226 147 42 chr6 124001674 124002395 -25514642 + RMER12 LTR ERVK 1 797 -525 3 1531 438 108 0 0 chr6 124002401 124002466 -25514571 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 4 1531 821 223 54 167 chr6 124002486 124002857 -25514180 + RMER12 LTR ERVK 994 1322 0 3 1531 1261 159 158 35 chr6 124002857 124003129 -25513908 - RMER6A LTR ERVK -352 338 1 5 1531 26 30 0 0 chr6 124003594 124003627 -25513410 + AT_rich Low_complexity Low_complexity 1 33 0 6 1531 570 63 0 0 chr6 124003657 124003736 -25513301 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1531 3954 121 35 19 chr6 124004200 124005281 -25511756 - RLTR13D1 LTR ERVK -12 794 1 8 1531 558 211 87 36 chr6 124005319 124005457 -25511580 + B1_Mus2 SINE Alu 3 147 0 9 1531 368 324 20 0 chr6 124005523 124005625 -25511412 - PB1 SINE Alu -22 105 2 1 1531 2004 280 69 44 chr6 124006580 124008172 -25508865 - RMER1B Other Other -6 1060 1 1 1531 2201 224 153 35 chr6 124009264 124010015 -25507022 - RLTR22_Mus LTR ERVK -794 1054 173 1 1531 288 127 0 0 chr6 124010015 124010070 -25506967 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1531 2201 223 126 22 chr6 124010070 124010234 -25506803 - RLTR22_Mus LTR ERVK -1636 172 2 1 1531 1102 267 111 51 chr6 124010276 124010518 -25506519 + Lx8 LINE L1 6975 7226 -247 1 1531 339 25 0 0 chr6 124010518 124010558 -25506479 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1531 1102 267 111 51 chr6 124010558 124010784 -25506253 + Lx8 LINE L1 7227 7471 -2 1 1531 3045 40 39 5 chr6 124012326 124012708 -25504329 + L1Md_F3 LINE L1 6176 6570 -14 1 1531 2166 78 7 0 chr6 124012726 124013020 -25504017 + L1_Mus2 LINE L1 6270 6565 -1 1 1531 24 85 0 0 chr6 124014312 124014371 -25502666 + AT_rich Low_complexity Low_complexity 1 59 0 1 1531 858 288 82 85 chr6 124014415 124014503 -25502534 - L1_Mur3 LINE L1 -1320 4560 4475 1 1531 2886 84 8 2 chr6 124014503 124014898 -25502139 + MTB LTR MaLR 4 400 0 2 1531 858 288 82 85 chr6 124014898 124015541 -25501496 - L1_Mur3 LINE L1 -1406 4474 3831 1 1531 427 243 19 56 chr6 124015789 124015950 -25501087 + RLTR9E LTR ERVK 252 406 -3 2 1531 5245 63 37 4 chr6 124016239 124016942 -25500095 + L1_Mus1 LINE L1 5839 6564 -3 2 1531 279 79 0 0 chr6 124017026 124017064 -25499973 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 2 1531 1017 74 68 0 chr6 124017064 124017212 -25499825 - B2_Mm1t SINE B2 -35 158 1 2 1531 22 0 0 0 chr6 124017220 124017242 -25499795 + AT_rich Low_complexity Low_complexity 1 22 0 2 1531 343 250 10 0 chr6 124017277 124017377 -25499660 + ETnERV-int LTR ERVK 395 495 -2819 2 1531 8645 157 64 69 chr6 124017471 124017711 -25499326 + RMER16-int LTR ERVK 240 464 -4942 2 1531 1479 28 0 0 chr6 124017711 124017887 -25499150 + (TCTCC)n Simple_repeat Simple_repeat 2 177 0 2 1531 8645 157 64 69 chr6 124017887 124019533 -25497504 + RMER16-int LTR ERVK 465 2116 -3290 2 1531 254 276 64 26 chr6 124019533 124019611 -25497426 - MamRep4096 DNA hAT? -19 407 327 2 1531 7853 126 141 4 chr6 124019611 124021025 -25496012 + RMER16-int LTR ERVK 2202 3808 -1598 2 1531 270 73 0 0 chr6 124021025 124021066 -25495971 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 1531 919 141 81 12 chr6 124021066 124021221 -25495816 + RMER16-int LTR ERVK 3809 3974 -1432 2 1531 650 293 56 12 chr6 124022225 124022477 -25494560 + MuRRS4-int LTR ERV1 4622 4884 -179 3 1531 257 179 18 18 chr6 124022612 124022669 -25494368 + RLTR44-int LTR ERVK 2645 2701 -111 3 1531 22 0 0 0 chr6 124022754 124022776 -25494261 + AT_rich Low_complexity Low_complexity 1 22 0 3 1531 351 292 68 85 chr6 124023046 124023222 -25493815 + RLTR9E LTR ERVK 234 406 -3 3 1531 405 0 0 0 chr6 124023310 124023355 -25493682 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1531 699 221 8 0 chr6 124023387 124023514 -25493523 + B1_Mur2 SINE Alu 6 133 -16 3 1531 628 234 0 46 chr6 124023626 124023756 -25493281 - B1_Mur1 SINE Alu -7 142 19 3 1531 21 0 0 0 chr6 124023825 124023846 -25493191 + AT_rich Low_complexity Low_complexity 1 21 0 3 1531 848 159 224 20 chr6 124023870 124024120 -25492917 + L1_Mur2 LINE L1 4109 4409 -1468 3 1531 2920 224 61 26 chr6 124024813 124025644 -25491393 + L1_Mus2 LINE L1 377 1236 -5380 4 1531 2970 109 0 0 chr6 124025617 124026086 -25490951 + MusHAL1 LINE L1 8 476 -2236 4 1531 17657 117 14 4 chr6 124026082 124029660 -25487377 + L1_Mus2 LINE L1 2948 6565 -1 4 1531 1030 301 70 45 chr6 124032968 124033455 -25483582 - Lx8 LINE L1 0 7473 6975 4 1531 2188 231 107 20 chr6 124033498 124033650 -25483387 + RLTR22_Mur LTR ERVK 1 173 -1675 4 1531 234 116 0 0 chr6 124033650 124033693 -25483344 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1531 2188 231 107 20 chr6 124033693 124034230 -25482807 + RLTR22_Mur LTR ERVK 174 749 -1099 4 1531 248 198 78 68 chr6 124034309 124034412 -25482625 + RLTR22_Mur LTR ERVK 918 1021 -827 4 1531 11378 58 14 14 chr6 124034603 124036715 -25480322 - L1Md_F2 LINE L1 -3 6579 4477 4 1531 4035 52 0 41 chr6 124036715 124037256 -25479781 - L1Md_F2 LINE L1 0 6582 6064 4 1531 11378 61 6 22 chr6 124037256 124037350 -25479687 - L1Md_F2 LINE L1 -1407 4476 4383 4 1531 1184 58 0 0 chr6 124037356 124037510 -25479527 + L1Md_F2 LINE L1 4258 4411 -1472 4 1531 3003 89 35 5 chr6 124037512 124037941 -25479096 - L1Md_F2 LINE L1 -10 6572 6131 4 1531 1058 64 0 0 chr6 124037941 124038082 -25478955 + B2_Mm2 SINE B2 23 163 -32 4 1531 914 203 0 98 chr6 124038087 124038333 -25478704 + RLTR22_Mur LTR ERVK 1590 1811 -37 4 1531 27243 136 16 23 chr6 124038596 124040814 -25476223 + L1_Mus2 LINE L1 667 2868 -3015 4 1531 1025 45 0 15 chr6 124040814 124040950 -25476087 + (GAAA)n Simple_repeat Simple_repeat 1 134 0 5 1531 27243 131 15 26 chr6 124040950 124040968 -25476069 + L1_Mus2 LINE L1 2869 2887 -2996 4 1531 1192 33 0 13 chr6 124040968 124041123 -25475914 + (GAAA)n Simple_repeat Simple_repeat 4 156 0 5 1531 27243 120 21 27 chr6 124041123 124044819 -25472218 + L1_Mus2 LINE L1 2888 6566 0 4 1531 228 100 0 0 chr6 124044864 124044904 -25472133 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 1531 788 299 114 9 chr6 124045923 124046257 -25470780 + RMER1B Other Other 45 413 -653 5 1531 322 325 201 20 chr6 124046230 124046434 -25470603 + RMER1A Other Other 2 242 -788 5 1531 1970 308 166 18 chr6 124046434 124047391 -25469646 + RMER1A Other Other 1 881 -149 5 1531 315 0 0 0 chr6 124047391 124047426 -25469611 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 5 1531 1970 300 189 17 chr6 124047426 124047526 -25469511 + RMER1A Other Other 882 1014 -16 5 1531 313 352 0 19 chr6 124048546 124048653 -25468384 + PB1 SINE Alu 1 105 -22 5 1531 626 211 98 0 chr6 124048727 124048860 -25468177 - B1_Mus2 SINE Alu 0 147 2 5 1531 405 0 0 0 chr6 124049341 124049386 -25467651 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1531 207 0 0 0 chr6 124049386 124049408 -25467629 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1531 1790 267 137 109 chr6 124049553 124050811 -25466226 - RMER12 LTR ERVK -29 1293 1 6 1531 1892 205 47 29 chr6 124050811 124051257 -25465780 + RMER6A LTR ERVK 303 756 0 6 1531 766 339 43 68 chr6 124052205 124052768 -25464269 + Lx8 LINE L1 6920 7468 -5 6 1531 30 27 0 0 chr6 124052821 124052858 -25464179 + AT_rich Low_complexity Low_complexity 1 37 0 6 1531 292 252 64 52 chr6 124052923 124053095 -25463942 + L1MCa LINE L1 1617 1790 -4718 6 1531 319 266 85 124 chr6 124053346 124053453 -25463584 + L1MCa LINE L1 2145 2237 -4271 6 1531 1118 76 0 7 chr6 124053453 124053599 -25463438 + B1_Mm SINE Alu 1 145 -2 6 1531 319 266 85 124 chr6 124053599 124053749 -25463288 + L1MCa LINE L1 2238 2392 -4116 6 1531 184 77 51 0 chr6 124054205 124054244 -25462793 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1531 288 342 21 21 chr6 124054463 124054657 -25462380 + L1MCa LINE L1 4679 4872 -1449 6 1531 259 288 0 0 chr6 124055045 124055104 -25461933 + L1M4c LINE L1 1706 1764 -4620 6 1531 203 109 0 61 chr6 124055465 124055514 -25461523 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 6 1531 8176 28 0 0 chr6 124055923 124056879 -25460158 - L1Md_A LINE L1 0 6582 5627 7 1531 495 118 0 0 chr6 124056965 124057050 -25459987 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 7 1531 772 252 91 30 chr6 124057056 124057428 -25459609 + L1M4c LINE L1 2536 2930 -3449 6 1531 327 264 130 27 chr6 124057474 124057766 -25459271 + L1M4c LINE L1 3931 4252 -2127 6 1531 696 115 0 0 chr6 124057997 124058110 -25458927 + (GGA)n Simple_repeat Simple_repeat 2 114 0 7 1531 498 184 32 8 chr6 124058113 124058239 -25458798 + L1_Mur3 LINE L1 2500 2609 -3271 7 1531 1021 219 29 6 chr6 124058247 124058559 -25458478 + L1_Mur3 LINE L1 4106 4424 -1456 7 1531 1477 190 21 26 chr6 124058555 124058934 -25458103 + L1_Mur3 LINE L1 4657 5033 -847 7 1531 594 291 0 20 chr6 124059060 124059263 -25457774 + Lx6 LINE L1 6643 6841 -619 7 1531 282 260 68 0 chr6 124059272 124059345 -25457692 - B1F1 SINE Alu -54 95 18 7 1531 188 370 101 45 chr6 124061318 124061604 -25455433 + L2 LINE L2 2004 2305 -1114 7 1531 28512 118 12 18 chr6 124061870 124068058 -25448979 + L1_Mus1 LINE L1 415 6567 0 7 1531 626 120 0 9 chr6 124068228 124068337 -25448700 + L1_Mus1 LINE L1 6460 6567 0 7 1531 22 80 0 0 chr6 124068347 124068397 -25448640 + AT_rich Low_complexity Low_complexity 1 50 0 7 1531 297 267 0 0 chr6 124068424 124068499 -25448538 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 1531 2006 264 30 31 chr6 124069348 124070206 -25446831 + Lx2B LINE L1 5774 6978 -22 8 1531 1361 58 0 0 chr6 124070313 124070484 -25446553 + L1_Mus1 LINE L1 6396 6566 -1 8 1531 1818 166 21 0 chr6 124070503 124070835 -25446202 + Lx2B LINE L1 5587 5925 -1075 8 1531 580 188 31 8 chr6 124070849 124070978 -25446059 + Lx2B LINE L1 6158 6289 -711 8 1531 5549 51 0 1 chr6 124070986 124071677 -25445360 + L1Md_F2 LINE L1 5892 6581 -1 8 1531 25 65 0 0 chr6 124071677 124071723 -25445314 + AT_rich Low_complexity Low_complexity 1 46 0 8 1531 28 29 0 0 chr6 124072158 124072193 -25444844 + AT_rich Low_complexity Low_complexity 1 35 0 8 1531 658 259 0 7 chr6 124072400 124072536 -25444501 - B1_Mur1 SINE Alu -6 143 9 8 1531 328 234 31 130 chr6 124072536 124072562 -25444475 + YREP_Mm Unknown Unknown 183 328 -1484 8 1531 395 326 51 17 chr6 124072832 124073069 -25443968 + Lx8 LINE L1 7136 7380 -93 8 1531 212 130 37 0 chr6 124073069 124073123 -25443914 + (CAGAGA)n Simple_repeat Simple_repeat 6 61 0 9 1531 5072 160 24 21 chr6 124074078 124075016 -25442021 - Lx2 LINE L1 -1 6996 6057 9 1531 420 279 10 0 chr6 124075024 124075128 -25441909 - Lx7 LINE L1 -684 7012 6908 9 1531 3866 226 54 8 chr6 124075772 124076660 -25440377 - Lx6 LINE L1 -213 7247 6319 9 1531 298 211 0 66 chr6 124076830 124076891 -25440146 + RLTR24 LTR ERV1 381 437 -92 9 1531 5965 186 20 4 chr6 124076930 124078444 -25438593 - Lx2B LINE L1 -247 6753 5198 9 1531 4523 158 6 14 chr6 124078442 124079419 -25437618 - L1_Mm LINE L1 -99 5784 4876 9 1531 184 311 13 39 chr6 124079618 124079695 -25437342 + L2a LINE L2 3333 3407 -19 9 1531 263 254 105 23 chr6 124080197 124080330 -25436707 - Lx4A LINE L1 -1 7057 6914 9 1531 34838 31 2 7 chr6 124081775 124086975 -25430062 + L1Md_T LINE L1 422 5586 -297 9 1531 8208 43 1 1 chr6 124086975 124087969 -25429068 + L1Md_T LINE L1 5587 6580 -2 9 1531 261 0 0 0 chr6 124088467 124088496 -25428541 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1531 618 315 72 43 chr6 124090005 124090490 -25426547 - Lx8 LINE L1 0 7473 6975 1 1531 485 228 21 130 chr6 124090580 124090772 -25426265 + RLTR22_Mus LTR ERVK 85 255 -1553 1 1531 335 235 74 16 chr6 124090864 124090985 -25426052 + RLTR22_Mur LTR ERVK 893 1020 -828 1 1531 796 254 4 44 chr6 124091186 124091413 -25425624 + RLTR22_Mur LTR ERVK 1590 1807 -41 1 1531 250 304 58 0 chr6 124091658 124091727 -25425310 + ID4 SINE ID 9 81 -2 1 1531 724 268 127 25 chr6 124092686 124093008 -25424029 + RMER1B Other Other 61 415 -651 1 1531 1858 290 88 23 chr6 124092992 124094240 -25422797 + RMER1A Other Other 9 1052 -14 1 1531 314 352 0 19 chr6 124095267 124095374 -25421663 + PB1 SINE Alu 1 105 -22 1 1531 621 178 90 30 chr6 124095447 124095580 -25421457 - B1_Mus2 SINE Alu 0 147 7 1 1531 392 270 75 75 chr6 124095580 124095607 -25421430 - ID_B1 SINE B4 -1 223 64 1 1531 303 85 0 0 chr6 124096002 124096049 -25420988 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1531 21 36 0 0 chr6 124096066 124096094 -25420943 + AT_rich Low_complexity Low_complexity 1 28 0 1 1531 748 244 52 37 chr6 124096183 124096509 -25420528 - RMER12 LTR ERVK -29 1293 1017 1 1531 1037 136 0 6 chr6 124096509 124096687 -25420350 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 1 1531 748 295 47 58 chr6 124096687 124096710 -25420327 - RMER12 LTR ERVK -306 1016 994 1 1531 712 100 8 8 chr6 124096711 124096832 -25420205 + (GGAA)n Simple_repeat Simple_repeat 1 121 0 1 1531 1892 239 129 60 chr6 124096832 124097561 -25419476 - RMER12 LTR ERVK -543 779 1 1 1531 2181 201 7 28 chr6 124097561 124098025 -25419012 + RMER6A LTR ERVK 303 756 0 1 1531 884 327 33 52 chr6 124098992 124099534 -25417503 + Lx8 LINE L1 6922 7453 -20 1 1531 339 318 94 33 chr6 124099717 124099961 -25417076 + L1MCa LINE L1 1617 1875 -4633 1 1531 273 255 49 39 chr6 124100725 124100827 -25416210 + L1MCa LINE L1 2470 2572 -3749 1 1531 337 320 34 34 chr6 124101097 124101301 -25415736 + L1MCa LINE L1 4680 4883 -1438 1 1531 33887 66 1 1 chr6 124101657 124107573 -25409464 - L1Md_F2 LINE L1 -9 6576 563 1 1531 1019 188 0 75 chr6 124107566 124107819 -25409218 - L1Md_F2 LINE L1 -6282 337 104 1 1531 225 0 0 0 chr6 124108177 124108202 -25408835 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 1531 1302 13 0 0 chr6 124108202 124108356 -25408681 - B2_Mm1a SINE B2 -39 154 1 1 1531 1095 95 0 13 chr6 124108427 124108576 -25408461 - B1_Mus1 SINE Alu -1 147 1 1 1531 21 0 0 0 chr6 124108676 124108697 -25408340 + AT_rich Low_complexity Low_complexity 1 21 0 1 1531 21 0 0 0 chr6 124109002 124109023 -25408014 + AT_rich Low_complexity Low_complexity 1 21 0 1 1531 405 58 0 0 chr6 124109202 124109254 -25407783 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 1 1531 597 261 108 8 chr6 124109302 124109657 -25407380 + L1M2 LINE L1 2315 2694 -3446 1 1531 276 282 139 29 chr6 124109703 124109984 -25407053 + L1M2 LINE L1 3695 4006 -2137 1 1531 777 76 0 0 chr6 124110215 124110320 -25406717 + (GGA)n Simple_repeat Simple_repeat 2 106 0 1 1531 447 194 46 0 chr6 124110336 124110444 -25406593 + Lx6 LINE L1 2500 2612 -3268 1 1531 1740 227 229 17 chr6 124110449 124111215 -25405822 + Lx6 LINE L1 4106 5033 -847 1 1531 1324 263 19 38 chr6 124111231 124111652 -25405385 + RLTR20B3 LTR ERVK 24 429 -148 1 1531 7951 32 7 2 chr6 124111652 124112605 -25404432 + L1Md_F3 LINE L1 5608 6565 -19 1 1531 474 18 0 0 chr6 124112605 124112660 -25404377 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1531 1720 244 7 49 chr6 124112660 124112758 -25404279 + RLTR20B3 LTR ERVK 430 517 -60 1 1531 1375 240 46 12 chr6 124112802 124113215 -25403822 + Lx6 LINE L1 5032 5458 -419 1 1531 1096 224 14 22 chr6 124113364 124113689 -25403348 + Lx6 LINE L1 5474 5801 -1249 1 1531 1008 273 53 27 chr6 124113657 124114290 -25402747 + Lx6 LINE L1 5945 6805 -655 1 1531 295 173 0 0 chr6 124114337 124114389 -25402648 - PB1D10 SINE Alu -26 91 40 1 1531 570 215 0 0 chr6 124117268 124117398 -25399639 + (TA)n Simple_repeat Simple_repeat 2 131 0 1 1531 447 359 24 47 chr6 124117401 124117699 -25399338 + B4A SINE B4 1 291 -1 1 1531 270 266 0 0 chr6 124117731 124117859 -25399178 + (CA)n Simple_repeat Simple_repeat 1 128 0 1 1531 1634 263 79 25 chr6 124118747 124119551 -25397486 + Lx3C LINE L1 5774 6969 -7 1 1531 29 98 0 0 chr6 124119580 124119672 -25397365 + AT_rich Low_complexity Low_complexity 1 92 0 1 1531 2010 132 3 0 chr6 124119674 124120007 -25397030 + Lx2B LINE L1 5587 5920 -1080 1 1531 488 206 7 47 chr6 124120046 124120194 -25396843 + Lx2B LINE L1 6844 6985 -15 1 1531 452 284 42 7 chr6 124120241 124120383 -25396654 + B1_Mur1 SINE Alu 2 148 -1 1 1531 707 126 11 57 chr6 124120701 124120878 -25396159 + GA-rich Low_complexity Low_complexity 4 172 0 1 1531 216 328 0 0 chr6 124120879 124120922 -25396115 + polypurine Low_complexity Low_complexity 4 46 0 1 1531 1206 97 0 0 chr6 124120922 124121097 -25395940 + (GGAAA)n Simple_repeat Simple_repeat 2 176 0 1 1531 216 328 0 0 chr6 124121097 124121114 -25395923 + polypurine Low_complexity Low_complexity 47 63 0 1 1531 28 0 0 0 chr6 124121879 124121907 -25395130 + AT_rich Low_complexity Low_complexity 1 28 0 1 1531 533 274 43 36 chr6 124122116 124122256 -25394781 - B1_Mur1 SINE Alu -2 147 7 1 1531 275 266 45 109 chr6 124122122 124122278 -25394759 + YREP_Mm Unknown Unknown 183 328 -1484 1 1531 358 343 41 9 chr6 124122548 124122766 -25394271 + Lx8 LINE L1 7136 7360 -113 1 1531 182 108 54 0 chr6 124122781 124122818 -25394219 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 1 1531 3495 35 0 0 chr6 124123664 124124098 -25392939 - L1Md_F3 LINE L1 -20 6564 6131 1 191 6981 169 26 18 chr6 124124216 124125812 -25391225 - Lx2 LINE L1 -1 6996 5386 1 1532 233 276 0 95 chr6 124125819 124125903 -25391134 - Charlie4 DNA MER1_type -747 1214 1139 1 1532 5694 174 4 8 chr6 124125907 124127057 -25389980 + L1_Mur2 LINE L1 3308 4453 -1424 1 1532 229 206 14 29 chr6 124127382 124127452 -25389585 + CT-rich Low_complexity Low_complexity 3 71 0 1 1532 252 288 0 0 chr6 124127476 124127542 -25389495 - ID4_ SINE ID -15 68 3 1 1532 264 359 0 0 chr6 124127588 124127652 -25389385 - PB1 SINE Alu -63 64 1 1 1532 2036 152 11 3 chr6 124127875 124128237 -25388800 - Lx5 LINE L1 -1099 5951 5587 1 1532 6554 74 12 1 chr6 124128254 124129117 -25387920 - RLTR13D5 LTR ERVK -151 872 1 1 1532 1955 238 33 19 chr6 124129127 124129610 -25387427 - Lx5 LINE L1 -211 6839 6350 1 1532 21 36 0 0 chr6 124129703 124129731 -25387306 + AT_rich Low_complexity Low_complexity 1 28 0 1 1532 5789 105 16 53 chr6 124129864 124130801 -25386236 + RLTR13D6 LTR ERVK 1 902 0 1 1532 1020 260 18 25 chr6 124131203 124131530 -25385507 - Lx7 LINE L1 -464 7232 6908 1 1532 3159 231 78 19 chr6 124132142 124133051 -25383986 - Lx6 LINE L1 -177 7283 6330 1 1532 3357 198 16 9 chr6 124133292 124134027 -25383010 - Lx2B LINE L1 -1 6999 6260 1 1532 4170 212 30 8 chr6 124134434 124135426 -25381611 - Lx4A LINE L1 -1 7057 5945 1 1532 6262 179 7 3 chr6 124135722 124137026 -25380011 - Lx4A LINE L1 -1123 5935 4620 1 1532 1349 80 0 4 chr6 124137038 124137303 -25379734 + (TTTC)n Simple_repeat Simple_repeat 1 263 0 1 1532 2573 145 23 6 chr6 124137303 124137790 -25379247 - Lx4A LINE L1 -1246 4631 4137 1 1532 21 0 0 0 chr6 124137835 124137856 -25379181 + AT_rich Low_complexity Low_complexity 1 21 0 1 1532 583 252 0 39 chr6 124137924 124138052 -25378985 + B1_Mur1 SINE Alu 19 141 -8 1 1532 706 242 0 0 chr6 124138188 124138316 -25378721 - B1_Mur2 SINE Alu -15 134 7 1 1532 309 118 0 0 chr6 124138369 124138420 -25378617 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 1 1532 900 278 81 56 chr6 124138487 124139225 -25377812 + L1_Mur3 LINE L1 3833 4589 -1291 1 1532 243 79 0 0 chr6 124140358 124140396 -25376641 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1532 2854 74 0 5 chr6 124140411 124140791 -25376246 - L1Md_F2 LINE L1 0 6582 6205 1 1532 536 330 89 32 chr6 124142874 124143100 -25373937 - Lx8 LINE L1 0 7473 7232 1 1532 183 42 0 0 chr6 124143100 124143124 -25373913 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1532 536 330 89 32 chr6 124143124 124143369 -25373668 - Lx8 LINE L1 -242 7231 6976 1 1532 1940 211 96 57 chr6 124143411 124144138 -25372899 + RLTR22_Mur LTR ERVK 1 714 -1094 1 1532 7671 13 0 1 chr6 124144312 124145228 -25371809 + L1Md_T LINE L1 4672 5586 -297 1 1532 8596 26 0 0 chr6 124145228 124146224 -25370813 + L1Md_T LINE L1 5587 6582 0 1 1532 307 371 0 19 chr6 124146717 124146824 -25370213 + PB1 SINE Alu 1 105 -22 1 1532 643 203 98 0 chr6 124146899 124147032 -25370005 - B1_Mus2 SINE Alu 0 147 2 1 1532 320 77 0 19 chr6 124147510 124147563 -25369474 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1532 22 88 0 0 chr6 124147587 124147644 -25369393 + AT_rich Low_complexity Low_complexity 1 57 0 1 1532 180 0 0 0 chr6 124147780 124147800 -25369237 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1532 1097 166 58 19 chr6 124148047 124148323 -25368714 + RMER6A LTR ERVK 1 322 -368 1 1532 909 231 38 79 chr6 124148352 124148721 -25368316 - RMER12 LTR ERVK -19 1303 1012 1 1532 984 13 25 31 chr6 124148721 124148880 -25368157 + (GGAGA)n Simple_repeat Simple_repeat 2 159 0 1 1532 909 261 37 104 chr6 124148880 124148957 -25368080 - RMER12 LTR ERVK -311 1011 936 1 1532 1672 253 133 56 chr6 124148934 124149670 -25367367 - RMER12 LTR ERVK -529 793 1 1 1532 2115 189 13 33 chr6 124149674 124150133 -25366904 + RMER6A LTR ERVK 307 756 0 1 1532 23 0 0 0 chr6 124150133 124150156 -25366881 + AT_rich Low_complexity Low_complexity 1 23 0 1 1532 1805 316 59 28 chr6 124151431 124152326 -25364711 + Lx8 LINE L1 6307 7229 -244 1 1532 312 297 82 20 chr6 124152756 124153000 -25364037 + L1MCa LINE L1 1617 1875 -4633 1 1532 351 257 102 90 chr6 124153179 124153423 -25363614 + L1MCa LINE L1 2148 2394 -4114 1 1532 274 208 30 30 chr6 124153763 124153862 -25363175 + L1MCa LINE L1 2469 2567 -3754 1 1532 31902 60 12 3 chr6 124153903 124158865 -25358172 + L1Md_F3 LINE L1 627 5586 -297 1 1532 7919 45 1 4 chr6 124158865 124159851 -25357186 + L1Md_F3 LINE L1 5587 6569 -15 1 1532 189 121 0 0 chr6 124159974 124160007 -25357030 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1532 506 268 21 21 chr6 124160231 124160425 -25356612 + L1MCa LINE L1 4679 4872 -1449 1 1532 203 250 0 59 chr6 124160918 124160986 -25356051 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1532 24 32 0 0 chr6 124161003 124161034 -25356003 + AT_rich Low_complexity Low_complexity 1 31 0 1 1532 324 70 0 0 chr6 124161327 124161370 -25355667 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 1 1532 8045 89 2 13 chr6 124161413 124163203 -25353834 + L1Md_Gf LINE L1 1 1142 -5380 1 1532 12833 21 0 0 chr6 124165999 124167554 -25349483 + L1Md_T LINE L1 4032 5586 -297 1 1532 8443 33 0 2 chr6 124167554 124168552 -25348485 + L1Md_T LINE L1 5587 6582 0 1 1532 189 196 0 0 chr6 124169066 124169117 -25347920 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 1532 660 248 23 9 chr6 124169262 124169478 -25347559 + L1M2 LINE L1 2476 2694 -3449 1 1532 303 285 102 16 chr6 124169513 124169827 -25347210 + L1M2 LINE L1 3679 4019 -2121 1 1532 296 127 18 0 chr6 124170050 124170105 -25346932 + (GGA)n Simple_repeat Simple_repeat 2 57 0 1 1532 452 181 67 0 chr6 124170119 124170224 -25346813 + Lx6 LINE L1 2500 2611 -3269 1 1532 1697 207 257 21 chr6 124170230 124170981 -25346056 + Lx6 LINE L1 4106 5033 -847 1 1532 1917 244 15 33 chr6 124171071 124171544 -25345493 + RLTR20B3 LTR ERVK 85 534 -43 1 1532 25 0 0 0 chr6 124171544 124171569 -25345468 + AT_rich Low_complexity Low_complexity 1 25 0 2 1532 1983 218 26 163 chr6 124171571 124172425 -25344612 + Lx6 LINE L1 5033 5769 -111 1 1532 1115 294 36 21 chr6 124172426 124173097 -25343940 + Lx6 LINE L1 5945 6841 -619 1 1532 265 199 24 0 chr6 124173113 124173181 -25343856 - PB1D10 SINE Alu -61 88 16 2 1532 4646 283 66 23 chr6 124175126 124177094 -25339943 + RNERVK23-int LTR ERVK 4564 6616 -1601 2 1532 848 237 9 5 chr6 124177175 124177391 -25339646 - Lx2B LINE L1 -492 6508 6292 2 1532 869 122 0 33 chr6 124177410 124177563 -25339474 - Lx2B LINE L1 -1079 5921 5774 2 1532 320 292 144 56 chr6 124177663 124177913 -25339124 - RNLTR23 LTR ERVK 0 642 371 2 1532 1438 183 0 0 chr6 124178106 124178385 -25338652 + Lx2B LINE L1 5649 5927 -1073 2 1532 3730 195 30 34 chr6 124178386 124179216 -25337821 + Lx2B LINE L1 6159 6985 -15 2 1532 554 241 70 42 chr6 124179266 124179409 -25337628 + B1_Mur2 SINE Alu 2 148 -1 2 1532 23 0 0 0 chr6 124179413 124179436 -25337601 + AT_rich Low_complexity Low_complexity 1 23 0 2 1532 30 59 0 0 chr6 124179969 124180020 -25337017 + AT_rich Low_complexity Low_complexity 1 51 0 2 1532 38 0 0 0 chr6 124180518 124180556 -25336481 + AT_rich Low_complexity Low_complexity 1 38 0 2 1532 634 241 45 8 chr6 124180760 124180894 -25336143 - B1_Mur1 SINE Alu -2 147 9 2 1532 259 204 64 127 chr6 124180763 124180920 -25336117 + YREP_Mm Unknown Unknown 182 328 -1484 2 1532 411 322 14 0 chr6 124181187 124181330 -25335707 + Lx8 LINE L1 7136 7280 -193 2 1532 197 158 0 34 chr6 124181399 124181458 -25335579 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 2 1532 7405 174 7 14 chr6 124182431 124184107 -25332930 - Lx2 LINE L1 -15 6982 5316 2 1532 5385 187 6 9 chr6 124184114 124184296 -25332741 + L1_Mur2 LINE L1 3289 3471 -2406 2 1532 180 0 0 0 chr6 124184296 124184316 -25332721 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1532 5385 187 6 9 chr6 124184316 124185302 -25331735 + L1_Mur2 LINE L1 3472 4452 -1425 2 1532 413 143 0 23 chr6 124185626 124185712 -25331325 + CT-rich Low_complexity Low_complexity 3 86 0 2 1532 243 262 32 32 chr6 124185751 124185814 -25331223 - ID4_ SINE ID -16 67 5 2 1532 1963 174 31 3 chr6 124186123 124186508 -25330529 - Lx5 LINE L1 -1068 5982 5587 2 1532 928 213 41 0 chr6 124186521 124186765 -25330272 - L1_Mur2 LINE L1 -3137 2740 2487 2 1532 207 0 0 0 chr6 124187080 124187103 -25329934 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1532 2144 141 51 15 chr6 124187216 124187611 -25329426 + Lx2 LINE L1 6237 6645 -352 2 1532 853 207 27 5 chr6 124187593 124187816 -25329221 + Lx2 LINE L1 6758 6985 -12 2 1532 235 311 9 9 chr6 124188109 124188216 -25328821 + L1_Rod LINE L1 1235 1341 -4506 2 1532 27428 94 67 14 chr6 124188242 124193468 -25323569 + L1Md_F3 LINE L1 218 5586 -297 2 1532 7997 50 2 1 chr6 124193468 124194451 -25322586 + L1Md_F3 LINE L1 5587 6570 -14 2 1532 492 226 0 0 chr6 124194462 124194586 -25322451 + L1_Mur2 LINE L1 4330 4453 -1424 2 1532 252 233 27 14 chr6 124194940 124195014 -25322023 + (TTCA)n Simple_repeat Simple_repeat 3 77 0 2 1532 234 318 0 0 chr6 124195032 124195098 -25321939 - ID4_ SINE ID -15 68 3 2 1532 236 368 9 13 chr6 124195116 124195208 -25321829 - PB1D10 SINE Alu -54 95 1 2 1532 1988 152 11 3 chr6 124195427 124195789 -25321248 - Lx5 LINE L1 -1099 5951 5587 2 1532 908 207 54 13 chr6 124195802 124196070 -25320967 - L1_Mur3 LINE L1 -3388 2758 2504 2 1532 328 321 75 24 chr6 124196071 124196323 -25320714 - L1M2 LINE L1 -1786 4357 4093 2 1532 1923 134 98 0 chr6 124196511 124196846 -25320191 + Lx2 LINE L1 6278 6645 -352 2 1532 1149 151 19 5 chr6 124196845 124197051 -25319986 + Lx2 LINE L1 6775 6983 -14 2 1532 298 243 17 43 chr6 124197157 124197273 -25319764 + Lx2B LINE L1 6883 6995 -5 2 1532 5094 132 21 43 chr6 124197418 124198577 -25318460 + L1_Mur2 LINE L1 1084 2214 -3663 2 1532 9677 121 44 16 chr6 124198571 124199899 -25317138 + L1VL4 LINE L1 549 2116 -3767 2 1532 974 67 97 0 chr6 124199899 124200033 -25317004 - B1_Mm SINE Alu 0 147 1 2 1532 9677 104 9 26 chr6 124200033 124201288 -25315749 + L1VL4 LINE L1 2103 3360 -554 2 1532 556 150 56 14 chr6 124201283 124201425 -25315612 + Lx7 LINE L1 7391 7538 -158 2 1532 1370 259 53 35 chr6 124202973 124203426 -25313611 + Lx7 LINE L1 6908 7368 -328 2 1532 27 29 0 0 chr6 124203545 124203579 -25313458 + AT_rich Low_complexity Low_complexity 1 34 0 2 1532 1244 225 40 7 chr6 124203580 124203884 -25313153 - L1_Mur3 LINE L1 -783 5097 4784 2 1532 306 228 0 12 chr6 124203906 124203986 -25313051 + L1_Mur2 LINE L1 2892 2970 -2907 2 1532 1251 260 118 2 chr6 124203986 124204391 -25312646 - MERVL_2A-int LTR ERVL -2451 3310 2859 2 1532 397 257 125 85 chr6 124204393 124204456 -25312581 + RLTR11A2 LTR ERVK 3 64 -389 2 1532 234 0 0 0 chr6 124204456 124204482 -25312555 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2 1532 546 279 93 91 chr6 124204482 124204912 -25312125 + RLTR11A2 LTR ERVK 65 512 -15 2 1532 852 260 133 88 chr6 124204961 124205358 -25311679 - MERVL_2A-int LTR ERVL -2900 2861 2447 2 1532 288 111 0 0 chr6 124205752 124205806 -25311231 + (T)n Simple_repeat Simple_repeat 1 54 0 2 1532 808 288 9 5 chr6 124207387 124207600 -25309437 + ID_B1 SINE B4 2 215 -9 2 1532 970 129 79 6 chr6 124208323 124208487 -25308550 - URR1A DNA MER1_type 0 226 51 2 1532 232 267 53 0 chr6 124209149 124209224 -25307813 + ID4_ SINE ID 1 79 -4 2 1532 2977 190 78 8 chr6 124209366 124210018 -25307019 + Lx5 LINE L1 6350 7047 -3 2 1532 464 167 0 27 chr6 124210035 124210183 -25306854 + (TA)n Simple_repeat Simple_repeat 1 144 0 2 1532 29 0 0 0 chr6 124210524 124210553 -25306484 + AT_rich Low_complexity Low_complexity 1 29 0 2 1532 186 71 0 0 chr6 124210596 124210624 -25306413 + (C)n Simple_repeat Simple_repeat 1 28 0 2 1532 313 194 68 27 chr6 124210887 124210961 -25306076 + PB1D10 SINE Alu 40 116 -1 2 1532 352 316 54 43 chr6 124211260 124211445 -25305592 + MER21B LTR ERV1 260 446 -417 2 1532 327 130 0 0 chr6 124212023 124212077 -25304960 + (GGA)n Simple_repeat Simple_repeat 3 56 0 2 1532 1182 279 34 39 chr6 124212100 124212536 -25304501 - Lx8 LINE L1 -262 7211 6778 2 1532 519 332 46 64 chr6 124214521 124214801 -25302236 + B4 SINE B4 2 276 -16 2 1532 967 281 0 0 chr6 124214811 124215049 -25301988 + Lx5 LINE L1 6505 6742 -308 2 1532 662 263 80 25 chr6 124215031 124215269 -25301768 + Lx6 LINE L1 7177 7427 -33 2 1532 314 333 29 0 chr6 124216039 124216210 -25300827 - L1MA6 LINE L1 -37 6263 6088 2 1532 1369 233 108 6 chr6 124216576 124216917 -25300120 - MTD LTR MaLR 0 419 44 2 1532 472 214 69 27 chr6 124217439 124217630 -25299407 + L1VL1 LINE L1 220 427 -5991 2 1532 4332 132 0 25 chr6 124217629 124217839 -25299198 + L1_Mus2 LINE L1 4539 4737 -1146 2 1532 225 0 0 0 chr6 124217839 124217864 -25299173 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1532 4332 132 0 25 chr6 124217864 124218412 -25298625 + L1_Mus2 LINE L1 4738 5278 -605 2 1532 7328 48 8 0 chr6 124218398 124219337 -25297700 + L1_Mus1 LINE L1 5621 6567 0 2 1532 7261 73 6 9 chr6 124219329 124220657 -25296380 + L1_Mus2 LINE L1 5241 6566 0 2 1532 472 309 55 38 chr6 124220941 124221234 -25295803 + L1MA4 LINE L1 5589 5886 -414 2 1532 1908 48 60 4 chr6 124221788 124222039 -25294998 - L1_Mus1 LINE L1 0 6567 6303 2 1532 339 210 0 0 chr6 124222695 124222795 -25294242 + (CA)n Simple_repeat Simple_repeat 1 100 0 2 1532 279 0 0 0 chr6 124222807 124222838 -25294199 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 1532 198 0 0 0 chr6 124222838 124222859 -25294178 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1532 274 294 0 0 chr6 124224462 124224530 -25292507 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1532 274 252 62 53 chr6 124225327 124225440 -25291597 - L1MA9 LINE L1 -36 6276 6163 2 1532 364 254 103 29 chr6 124225458 124225632 -25291405 - L1MA9 LINE L1 -271 6041 5855 2 1532 533 201 21 9 chr6 124225696 124225828 -25291209 + L1M3 LINE L1 5518 5652 -651 2 1532 489 284 78 124 chr6 124225834 124226109 -25290928 + B4A SINE B4 42 292 0 2 1532 352 43 0 21 chr6 124226243 124226290 -25290747 - HAL1-3A_ME LINE L1 -837 2021 1976 2 1532 435 38 0 0 chr6 124226333 124226386 -25290651 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1532 543 224 128 40 chr6 124226660 124226890 -25290147 - MTD-int LTR MaLR -448 810 569 2 1532 1821 234 59 5 chr6 124226911 124227304 -25289733 - MTD LTR MaLR -14 405 1 2 1532 351 0 0 0 chr6 124227383 124227422 -25289615 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1532 276 51 0 0 chr6 124227464 124227503 -25289534 + B1_Mur4 SINE Alu 112 150 0 2 1532 257 27 54 0 chr6 124227510 124227547 -25289490 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 2 1532 25 0 0 0 chr6 124227606 124227631 -25289406 + AT_rich Low_complexity Low_complexity 1 25 0 2 1532 1250 245 126 86 chr6 124227931 124228591 -25288446 - Lx9 LINE L1 0 7644 6959 2 1532 31 58 0 0 chr6 124228821 124228873 -25288164 + AT_rich Low_complexity Low_complexity 1 52 0 2 1532 346 284 14 0 chr6 124230890 124230964 -25286073 + PB1D10 SINE Alu 13 87 -30 2 1532 28 61 0 0 chr6 124231577 124231626 -25285411 + AT_rich Low_complexity Low_complexity 1 49 0 2 1532 25 51 0 0 chr6 124232029 124232068 -25284969 + AT_rich Low_complexity Low_complexity 1 39 0 2 1532 614 227 25 16 chr6 124232151 124232272 -25284765 + ID_B1 SINE B4 99 220 -4 2 1532 393 250 23 0 chr6 124232350 124232438 -25284599 + Lx8 LINE L1 7058 7147 -326 2 1532 186 43 0 0 chr6 124232465 124232488 -25284549 + (GGGAGA)n Simple_repeat Simple_repeat 1 23 0 2 1532 1163 88 0 0 chr6 124233172 124233319 -25283718 + B1_Mus2 SINE Alu 1 147 0 2 1532 25 31 0 0 chr6 124233443 124233475 -25283562 + AT_rich Low_complexity Low_complexity 1 32 0 2 1532 6378 105 42 14 chr6 124233641 124235324 -25281713 + L1Md_F LINE L1 132 1863 -4020 2 1532 1501 250 50 148 chr6 124235348 124235954 -25281083 + RLTR1D LTR ERV1 60 605 0 2 1532 19577 75 4 7 chr6 124235955 124238600 -25278437 + L1Md_F2 LINE L1 1861 4497 -1386 2 1532 3029 16 0 0 chr6 124238600 124238922 -25278115 - RLTRETN_Mm LTR ERVK 0 322 1 2 1532 40383 32 20 7 chr6 124238922 124243701 -25273336 - MMETn-int LTR ERVK 0 4844 1 2 1532 3053 9 0 0 chr6 124243701 124244023 -25273014 - RLTRETN_Mm LTR ERVK 0 322 1 2 1532 8498 69 2 12 chr6 124244023 124245129 -25271908 + L1Md_F2 LINE L1 4492 5586 -297 2 1532 8113 72 1 4 chr6 124245130 124246123 -25270914 + L1Md_F2 LINE L1 5588 6577 -5 2 1532 361 253 102 35 chr6 124246887 124247084 -25269953 - L1M3f LINE L1 -4260 1068 859 2 1532 786 174 155 29 chr6 124247341 124247548 -25269489 + BGLII_A LTR ERVK 213 445 0 2 1532 532 316 195 31 chr6 124249032 124249421 -25267616 - HERVL74-int LTR ERVL -589 5096 4644 2 1532 288 315 21 11 chr6 124249656 124249749 -25267288 - HERVL74-int LTR ERVL -2093 3592 3499 2 1532 366 263 104 35 chr6 124249754 124249927 -25267110 - HERVL74-int LTR ERVL -2348 3337 3153 2 1532 1014 40 0 0 chr6 124250049 124250173 -25266864 - B1_Mm SINE Alu -9 138 15 2 1532 541 347 18 22 chr6 124250182 124250406 -25266631 - HERVL74-int LTR ERVL -2670 3015 2793 2 1532 486 297 23 0 chr6 124250439 124250567 -25266470 + B1F SINE Alu 7 137 -12 2 1532 7371 148 1 23 chr6 124251025 124252165 -25264872 + Lx4A LINE L1 5941 7055 -3 3 1532 722 243 85 106 chr6 124252182 124252371 -25264666 + B3A SINE B2 1 185 -10 3 1532 3247 220 78 25 chr6 124252371 124253420 -25263617 - RMER1B Other Other -13 1053 1 3 1532 1325 212 148 142 chr6 124253451 124253923 -25263114 - RMER1B Other Other -542 524 50 3 1533 211 47 22 65 chr6 124256333 124256379 -25260658 + (TTG)n Simple_repeat Simple_repeat 1 44 0 3 1533 216 286 36 62 chr6 124258058 124258170 -25258867 + MIRb SINE MIR 121 229 -39 3 1533 683 273 32 37 chr6 124259483 124259700 -25257337 + B3 SINE B2 1 216 0 3 1533 569 190 23 0 chr6 124260013 124260187 -25256850 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 3 1533 1575 211 53 36 chr6 124260629 124260988 -25256049 - ORR1D2 LTR MaLR -5 365 1 3 1533 465 34 0 0 chr6 124261948 124262007 -25255030 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1533 247 336 37 46 chr6 124262115 124262224 -25254813 + B1F1 SINE Alu 6 113 -36 3 1533 786 206 68 11 chr6 124262930 124263107 -25253930 - B2_Mm2 SINE B2 -8 187 1 3 1533 433 328 16 16 chr6 124263251 124263372 -25253665 + B4A SINE B4 1 121 -171 3 1533 863 52 17 0 chr6 124264152 124264268 -25252769 + (CTATT)n Simple_repeat Simple_repeat 3 120 0 3 1533 247 81 0 0 chr6 124264359 124264396 -25252641 + Lx4B LINE L1 6328 6364 -694 3 1533 3539 44 0 10 chr6 124264396 124264807 -25252230 + L1Md_T LINE L1 6174 6580 -2 3 1533 3926 172 55 9 chr6 124264803 124265476 -25251561 + Lx5 LINE L1 6331 7034 -16 3 1533 276 30 0 0 chr6 124265476 124265509 -25251528 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 3 1533 1272 61 0 0 chr6 124265795 124265942 -25251095 - B1_Mus2 SINE Alu 0 147 1 3 1533 585 0 0 0 chr6 124266649 124266714 -25250323 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1533 1291 176 4 18 chr6 124268251 124268477 -25248560 - URR1A DNA MER1_type 0 226 4 3 1533 22 56 0 0 chr6 124269496 124269532 -25247505 + AT_rich Low_complexity Low_complexity 1 36 0 3 1533 493 298 56 75 chr6 124270781 124271100 -25245937 - MTC-int LTR MaLR -43 1215 903 3 1533 3598 175 73 82 chr6 124271100 124271977 -25245060 - RLTR19-int LTR ERVK -4918 1219 351 3 1533 1451 134 234 4 chr6 124272146 124272437 -25244600 - RLTR33 LTR ERVK -155 523 21 3 1533 1235 300 66 34 chr6 124272957 124273519 -25243518 - Lx7 LINE L1 -6 7467 6888 3 1533 2802 255 55 34 chr6 124273514 124274524 -25242513 - Lx7 LINE L1 -1575 6121 5093 3 1533 1815 239 146 16 chr6 124274629 124275144 -25241893 - Lx8 LINE L1 -2 7471 6890 3 1533 321 26 0 0 chr6 124275236 124275274 -25241763 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 1533 935 124 40 40 chr6 124275722 124275898 -25241139 - URR1A DNA MER1_type 0 226 51 3 1533 567 149 26 9 chr6 124276239 124276354 -25240683 + Lx4A LINE L1 6933 7049 -9 3 1533 210 143 0 0 chr6 124276357 124276392 -25240645 + (TTAA)n Simple_repeat Simple_repeat 1 35 0 3 1533 1210 58 0 7 chr6 124276929 124277069 -25239968 + B1_Mus1 SINE Alu 2 140 -8 3 1533 26 0 0 0 chr6 124277185 124277211 -25239826 + AT_rich Low_complexity Low_complexity 1 26 0 3 1533 207 286 0 28 chr6 124279204 124279276 -25237761 + (TATG)n Simple_repeat Simple_repeat 3 72 0 3 1533 208 234 0 0 chr6 124279228 124279275 -25237762 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 3 1533 423 0 0 0 chr6 124279316 124279363 -25237674 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1533 587 255 50 0 chr6 124279800 124279941 -25237096 - B1_Mur2 SINE Alu -1 148 1 3 1533 1023 102 167 12 chr6 124280210 124280378 -25236659 + B2_Mm2 SINE B2 2 195 0 3 1533 5494 48 3 0 chr6 124280821 124281483 -25235554 + L1_Mus2 LINE L1 5903 6566 0 3 1533 264 279 66 30 chr6 124281539 124281705 -25235332 - L1MA8 LINE L1 -5 6286 6115 3 1533 4533 8 2 0 chr6 124281726 124282218 -25234819 - MT2_Mm LTR ERVL 0 493 1 3 1533 321 0 0 0 chr6 124282218 124282256 -25234781 - MERVL-int LTR ERVL 0 5485 5448 3 1533 344 179 46 35 chr6 124282256 124282343 -25234694 - ORR1A3-int LTR MaLR -1323 640 553 3 1533 48344 15 6 0 chr6 124282343 124287669 -25229368 - MERVL-int LTR ERVL -125 5360 1 3 1533 4533 8 2 0 chr6 124287669 124288161 -25228876 - MT2_Mm LTR ERVL 0 493 1 3 1533 8916 135 28 3 chr6 124288162 124289805 -25227232 - Lx2B LINE L1 -15 6985 5296 3 1533 3424 66 27 7 chr6 124289805 124290246 -25226791 - L1_Mus1 LINE L1 0 6567 6118 3 1533 7501 159 18 6 chr6 124290246 124290978 -25226059 - Lx2B LINE L1 -591 5295 4563 3 1533 624 157 35 0 chr6 124290976 124291091 -25225946 - Lx5 LINE L1 -1213 5837 5719 3 1533 242 301 71 41 chr6 124291096 124291266 -25225771 + L1M2 LINE L1 5315 5489 -802 3 1533 2561 190 16 2 chr6 124291287 124291735 -25225302 + Lx5 LINE L1 6109 6562 -488 3 1533 363 98 0 0 chr6 124292640 124292701 -25224336 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1533 543 91 34 0 chr6 124292707 124292795 -25224242 + RLTR24 LTR ERV1 11 101 -428 3 1533 209 167 0 69 chr6 124292797 124292855 -25224182 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 3 1533 552 264 59 21 chr6 124292865 124293051 -25223986 - RMER10B LTR ERVL -12 386 194 3 1533 1164 112 0 0 chr6 124293066 124293145 -25223892 + (GAA)n Simple_repeat Simple_repeat 3 81 0 3 1533 1092 119 0 0 chr6 124293145 124293322 -25223715 + (GGA)n Simple_repeat Simple_repeat 2 178 0 3 1533 1164 112 0 0 chr6 124293322 124293420 -25223617 + (GAA)n Simple_repeat Simple_repeat 1 98 0 3 1533 261 0 0 0 chr6 124293420 124293449 -25223588 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 3 1533 1063 221 59 21 chr6 124293449 124293511 -25223526 - RMER10A LTR ERVL -144 298 233 3 1533 1288 57 6 11 chr6 124293511 124293690 -25223347 + (GGGAA)n Simple_repeat Simple_repeat 1 178 0 3 1533 1044 0 0 0 chr6 124293690 124293805 -25223232 + (GGAGA)n Simple_repeat Simple_repeat 1 116 0 3 1533 1063 221 59 21 chr6 124293805 124294028 -25223009 - RMER10A LTR ERVL -210 232 2 3 1533 2266 126 113 9 chr6 124294423 124294810 -25222227 - RMER6A LTR ERVK -269 487 63 3 1533 309 82 0 0 chr6 124294810 124294859 -25222178 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 3 1533 2266 126 113 9 chr6 124294859 124294912 -25222125 - RMER6A LTR ERVK -694 62 3 3 1533 243 226 0 31 chr6 124295044 124295108 -25221929 + RMER6B LTR ERVK 368 429 -32 3 1533 303 279 0 0 chr6 124296208 124296276 -25220761 + L1MD3 LINE L1 7871 7938 -57 3 1533 700 275 92 8 chr6 124296490 124296732 -25220305 - ORR1D2 LTR MaLR -26 348 91 3 1533 497 284 32 49 chr6 124296738 124296923 -25220114 + B3 SINE B2 30 211 -5 3 1533 504 199 9 2 chr6 124298489 124298599 -25218438 + PB1D9 SINE Alu 3 111 -9 3 1533 290 200 29 44 chr6 124298631 124298699 -25218338 + B3A SINE B2 1 67 -131 3 1533 1835 126 96 18 chr6 124298699 124299031 -25218006 - ORR1B2 LTR MaLR 0 367 10 3 1533 326 226 71 0 chr6 124299037 124299121 -25217916 + B3A SINE B2 64 153 -45 3 1533 516 105 0 0 chr6 124299130 124299206 -25217831 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 1533 2594 141 24 35 chr6 124299422 124299848 -25217189 - MTC LTR MaLR 0 421 1 3 1533 839 235 154 8 chr6 124300882 124301176 -25215861 + ORR1D2 LTR MaLR 35 370 0 3 1533 418 131 20 0 chr6 124301755 124301854 -25215183 + CT-rich Low_complexity Low_complexity 2 102 0 3 1533 889 18 64 18 chr6 124301854 124302025 -25215012 + (TC)n Simple_repeat Simple_repeat 2 180 0 3 1533 254 329 56 35 chr6 124302056 124302198 -25214839 - RSINE1 SINE B4 -19 146 2 3 1533 2540 64 18 6 chr6 124303565 124303895 -25213142 - L1_Mus2 LINE L1 -151 6415 6082 3 1533 925 86 14 0 chr6 124303895 124304035 -25213002 + L1_Mus2 LINE L1 6424 6565 -1 3 1533 1177 34 7 14 chr6 124304306 124304454 -25212583 + B1_Mus1 SINE Alu 2 148 0 3 1533 860 80 16 0 chr6 124304469 124304594 -25212443 + (GAAA)n Simple_repeat Simple_repeat 4 130 0 3 1533 448 294 86 16 chr6 124304603 124304790 -25212247 + B3 SINE B2 5 204 -12 3 1533 180 0 0 0 chr6 124305544 124305564 -25211473 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1533 269 270 0 0 chr6 124305858 124305921 -25211116 + ID4_ SINE ID 3 65 -18 3 1533 278 264 11 84 chr6 124307242 124307337 -25209700 - B4A SINE B4 0 292 205 3 1533 222 91 0 0 chr6 124307376 124307409 -25209628 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1533 395 285 32 16 chr6 124307409 124307525 -25209512 - B4A SINE B4 -173 119 2 3 1533 200 176 19 19 chr6 124307712 124307764 -25209273 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1533 245 262 134 45 chr6 124308053 124308165 -25208872 - MLT1A1 LTR MaLR -19 389 268 3 1533 2011 134 21 93 chr6 124308381 124308809 -25208228 + RMER4B LTR ERVK 1 397 -188 3 1533 307 284 98 14 chr6 124309404 124309547 -25207490 + L1M4 LINE L1 2783 2937 -3209 3 1533 22 0 0 0 chr6 124309784 124309806 -25207231 + AT_rich Low_complexity Low_complexity 1 22 0 3 1533 429 20 0 0 chr6 124310289 124310339 -25206698 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 3 1533 1294 61 0 16 chr6 124310339 124310522 -25206515 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1533 722 109 44 19 chr6 124310539 124310698 -25206339 + GA-rich Low_complexity Low_complexity 5 167 0 3 1533 2551 113 12 2 chr6 124311866 124312265 -25204772 - RMER12 LTR ERVK -904 418 16 3 1533 237 359 0 25 chr6 124312622 124312702 -25204335 + ID4 SINE ID 3 80 -3 3 1533 507 17 0 0 chr6 124313789 124313849 -25203188 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1533 483 266 9 0 chr6 124315391 124315504 -25201533 + B3 SINE B2 1 114 -102 3 1533 21 0 0 0 chr6 124315693 124315714 -25201323 + AT_rich Low_complexity Low_complexity 1 21 0 3 1533 767 294 83 32 chr6 124317198 124317476 -25199561 - B4A SINE B4 0 292 1 3 1533 366 169 0 14 chr6 124317618 124317690 -25199347 + ID_B1 SINE B4 117 187 -37 3 1533 3143 63 5 17 chr6 124317890 124318294 -25198743 - MTB LTR MaLR -1 399 1 3 1533 583 308 91 25 chr6 124320249 124320535 -25196502 - MTEa LTR MaLR -1 378 74 3 1533 446 303 83 43 chr6 124320990 124321290 -25195747 + MLT1C LTR MaLR 63 374 -93 3 1533 257 51 26 0 chr6 124321319 124321358 -25195679 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1533 533 297 134 16 chr6 124321402 124321655 -25195382 - B4A SINE B4 -8 284 2 3 1533 283 294 0 21 chr6 124323799 124323893 -25193144 + MER45A DNA Tip100 51 142 -36 4 1533 724 215 20 14 chr6 124326041 124326187 -25190850 + B1_Mur1 SINE Alu 3 149 0 4 1533 663 125 0 0 chr6 124326743 124326847 -25190190 + (GA)n Simple_repeat Simple_repeat 2 105 0 4 1533 717 179 101 48 chr6 124326903 124327091 -25189946 - MTEa LTR MaLR -162 217 20 4 1533 237 341 11 0 chr6 124327480 124327571 -25189466 - Tigger7 DNA MER2_type -6 2485 2394 4 1533 485 329 51 23 chr6 124327928 124328143 -25188894 + L1MCc LINE L1 281 501 -5922 4 1533 280 330 56 35 chr6 124328245 124328477 -25188560 + L1MD1 LINE L1 5786 6022 -220 4 1533 1126 29 52 0 chr6 124328548 124328684 -25188353 + B1_Mm SINE Alu 2 144 -3 4 1533 237 65 0 0 chr6 124328684 124328715 -25188322 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1533 456 172 124 40 chr6 124329203 124329418 -25187619 + L1_Rod LINE L1 4127 4386 -1500 4 1533 212 264 0 54 chr6 124329927 124329941 -25187096 + B4 SINE B4 78 88 -204 4 1533 328 277 18 18 chr6 124329941 124330022 -25187015 + PB1D10 SINE Alu 4 83 -34 4 1533 1211 41 7 0 chr6 124330022 124330169 -25186868 + B1_Mus1 SINE Alu 1 148 0 4 1533 328 277 18 18 chr6 124330169 124330201 -25186836 + PB1D10 SINE Alu 84 116 -1 4 1533 479 169 34 0 chr6 124330314 124330403 -25186634 + B2_Mm2 SINE B2 95 186 -9 4 1533 303 244 0 0 chr6 124330715 124330793 -25186244 + C-rich Low_complexity Low_complexity 2 79 0 4 1533 1081 259 113 32 chr6 124331294 124331665 -25185372 + Lx8 LINE L1 6554 6954 -519 4 1533 2435 84 77 57 chr6 124331938 124332341 -25184696 - IAPLTR2a LTR ERVK 0 411 1 4 1533 210 143 0 0 chr6 124332503 124332538 -25184499 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1533 1148 191 105 11 chr6 124332784 124333045 -25183992 - ETnERV2-int LTR ERVK -7121 285 3 4 1533 6099 78 6 22 chr6 124333047 124333868 -25183169 - RLTR13C2 LTR ERVK 0 808 1 4 1533 21864 102 20 10 chr6 124333869 124334576 -25182461 + L1_Mur1 LINE L1 1165 1887 -3999 4 1533 2662 49 65 0 chr6 124334576 124334901 -25182136 - ORR1A1 LTR MaLR 0 346 1 4 1533 21864 103 20 14 chr6 124334901 124337638 -25179399 + L1_Mur1 LINE L1 1888 4630 -1256 4 1533 6078 85 95 3 chr6 124337629 124338510 -25178527 + L1VL2 LINE L1 65 1026 -5309 4 1533 1188 89 6 0 chr6 124338510 124338668 -25178369 + B2_Mm1a SINE B2 2 160 -33 4 1533 180 0 0 0 chr6 124338668 124338688 -25178349 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 4 1533 7097 68 5 22 chr6 124338696 124339732 -25177305 + MusHAL1 LINE L1 109 1126 -1586 4 1533 1584 271 37 51 chr6 124339830 124340554 -25176483 - L1_Rod LINE L1 -1222 4625 3912 4 1533 1040 83 20 14 chr6 124340555 124340701 -25176336 + B1_Mus1 SINE Alu 2 148 0 4 1533 182 62 31 0 chr6 124340705 124340737 -25176300 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1533 430 216 8 17 chr6 124340737 124340855 -25176182 - L1_Rod LINE L1 -1933 3914 3798 4 1533 7813 136 22 6 chr6 124340882 124342266 -25174771 + Lx3C LINE L1 4605 6012 -964 4 1533 296 286 0 0 chr6 124342253 124342330 -25174707 + Lx3C LINE L1 6896 6972 -1 4 1533 442 291 174 24 chr6 124342442 124342675 -25174362 + B4A SINE B4 2 272 -20 4 1533 612 0 0 0 chr6 124342675 124342743 -25174294 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1533 442 291 174 24 chr6 124342743 124342762 -25174275 + B4A SINE B4 273 291 -1 4 1533 26 30 0 0 chr6 124343177 124343210 -25173827 + AT_rich Low_complexity Low_complexity 1 33 0 4 1533 3704 216 175 18 chr6 124343856 124344940 -25172097 - Lx9 LINE L1 -1 7643 6389 4 1533 410 302 182 12 chr6 124344922 124345257 -25171780 - L1_Rod LINE L1 -628 5219 4828 4 1533 288 0 0 0 chr6 124345257 124345289 -25171748 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1533 1186 62 7 0 chr6 124345289 124345435 -25171602 - B1_Mus2 SINE Alu 0 147 1 4 1533 937 268 85 49 chr6 124345609 124345850 -25171187 - L1_Mur3 LINE L1 -1619 4261 4005 4 1533 1174 70 0 0 chr6 124345850 124345993 -25171044 - B1_Mm SINE Alu 0 147 5 4 1533 937 268 85 49 chr6 124345993 124346199 -25170838 - L1_Mur3 LINE L1 -1876 4004 3799 4 1533 352 289 50 83 chr6 124346212 124346393 -25170644 - MTD LTR MaLR 0 419 245 4 1533 180 283 37 19 chr6 124347219 124347273 -25169764 - L3 LINE CR1 -4434 55 1 4 1533 294 50 0 0 chr6 124348257 124348297 -25168740 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 4 1533 28 0 0 0 chr6 124351211 124351239 -25165798 + AT_rich Low_complexity Low_complexity 1 28 0 4 1533 436 235 0 30 chr6 124351258 124351359 -25165678 + B4A SINE B4 7 104 -188 4 1533 365 231 45 36 chr6 124351391 124351503 -25165534 + B4A SINE B4 180 292 0 4 1533 305 274 147 0 chr6 124351741 124351843 -25165194 - PB1D10 SINE Alu 0 117 1 4 1533 263 122 0 75 chr6 124352074 124352127 -25164910 - U2 snRNA snRNA -139 49 1 4 1533 208 304 65 97 chr6 124353367 124353472 -25163565 - MER5A DNA MER1_type -10 179 78 4 1533 1530 47 26 0 chr6 124353472 124353662 -25163375 - B2_Mm2 SINE B2 0 195 1 4 1533 208 304 65 97 chr6 124353662 124353680 -25163357 - MER5A DNA MER1_type -112 77 60 4 1533 604 241 195 0 chr6 124355594 124355768 -25161269 + B3 SINE B2 2 209 -7 4 1533 654 150 133 0 chr6 124355901 124356021 -25161016 - B1_Mur2 SINE Alu -10 139 4 4 1533 383 278 18 44 chr6 124356289 124356402 -25160635 - PB1D10 SINE Alu -7 110 1 4 1533 249 195 24 89 chr6 124357323 124357492 -25159545 + (CACAC)n Simple_repeat Simple_repeat 3 160 0 4 1533 209 172 58 72 chr6 124357530 124357741 -25159296 + (CACAC)n Simple_repeat Simple_repeat 1 207 0 4 1533 232 224 39 26 chr6 124357797 124357875 -25159162 + ID4_ SINE ID 2 80 -3 4 1533 1200 202 72 128 chr6 124358649 124359081 -25157956 + MT2A LTR ERVL 2 465 -68 4 1533 312 119 0 0 chr6 124359104 124359163 -25157874 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1533 257 268 214 7 chr6 124359298 124359452 -25157585 + L1MD2 LINE L1 6030 6215 -144 4 1533 475 202 36 0 chr6 124359657 124359741 -25157296 + PB1D10 SINE Alu 17 103 -14 4 1533 180 0 0 0 chr6 124359742 124359762 -25157275 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1533 1164 49 7 7 chr6 124359957 124360102 -25156935 + B1_Mus1 SINE Alu 4 148 0 4 1533 600 229 119 50 chr6 124360181 124360383 -25156654 + B3 SINE B2 1 216 0 4 1533 562 277 218 0 chr6 124361557 124361777 -25155260 + Lx8 LINE L1 6777 7044 -429 4 1533 832 102 148 0 chr6 124361845 124361973 -25155064 + B1_Mm SINE Alu 1 147 0 4 1533 1415 75 27 0 chr6 124361984 124362171 -25154866 + B2_Mm2 SINE B2 2 193 -2 4 1533 223 301 109 29 chr6 124362190 124362327 -25154710 + MIRb SINE MIR 76 223 -45 4 1533 724 290 66 37 chr6 124362378 124362575 -25154462 - MER2 DNA MER2_type -15 330 124 4 1533 369 0 0 0 chr6 124362575 124362616 -25154421 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1533 490 206 35 70 chr6 124362618 124362733 -25154304 + PB1D7 SINE Alu 2 112 -8 4 1533 724 290 66 37 chr6 124362733 124362804 -25154233 - MER2 DNA MER2_type -222 123 51 4 1533 260 324 78 35 chr6 124364097 124364212 -25152825 + MIRb SINE MIR 64 183 -85 4 1533 237 176 39 51 chr6 124364883 124364961 -25152076 + C-rich Low_complexity Low_complexity 3 79 0 4 1533 378 325 62 38 chr6 124366535 124366695 -25150342 - MIR SINE MIR -1 261 98 4 1533 356 340 47 34 chr6 124366719 124366868 -25150169 + RSINE1 SINE B4 5 155 -10 4 1533 252 350 121 30 chr6 124367221 124367386 -25149651 - MIR SINE MIR -37 225 46 4 1533 302 331 151 27 chr6 124367481 124367667 -25149370 - Cheshire DNA MER1_type -2211 209 1 4 1533 316 298 74 58 chr6 124367669 124367790 -25149247 - B1F SINE Alu -26 123 1 4 1533 409 183 37 0 chr6 124367820 124367902 -25149135 - PB1D10 SINE Alu -28 89 5 4 1533 192 179 0 0 chr6 124368111 124368150 -25148887 + T-rich Low_complexity Low_complexity 2 40 0 4 1533 317 250 118 0 chr6 124368154 124368230 -25148807 + B4 SINE B4 68 152 -140 4 1533 405 191 0 0 chr6 124368168 124368231 -25148806 + B1_Mus2 SINE Alu 6 68 -79 4 1533 316 292 53 9 chr6 124368233 124368347 -25148690 + L1MEg LINE L1 1850 1968 -4116 4 1533 393 294 65 35 chr6 124368427 124368596 -25148441 + L1MDa LINE L1 1002 1175 -5458 4 1533 268 204 0 0 chr6 124368848 124368897 -25148140 + ID4 SINE ID 3 51 -32 4 1533 318 318 58 40 chr6 124369006 124369232 -25147805 - MER87 LTR ERV1 -11 530 301 4 1533 1228 241 64 34 chr6 124369725 124369785 -25147252 + L1MDa LINE L1 1310 1368 -5265 4 1533 1456 33 77 0 chr6 124369785 124369966 -25147071 + B2_Mm2 SINE B2 1 195 0 4 1533 1228 241 64 34 chr6 124369966 124370344 -25146693 + L1MDa LINE L1 1369 1760 -4873 4 1533 313 297 36 6 chr6 124370342 124370508 -25146529 + L1MDa LINE L1 1920 2090 -4543 4 1533 1585 266 137 62 chr6 124370707 124370904 -25146133 + L1MC2 LINE L1 5359 5558 -786 4 1533 3507 73 24 2 chr6 124370904 124371193 -25145844 + MT2C_Mm LTR ERVL 1 298 -177 4 1533 360 0 0 0 chr6 124371193 124371233 -25145804 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1533 3507 73 24 2 chr6 124371233 124371408 -25145629 + MT2C_Mm LTR ERVL 299 474 -1 4 1533 1585 266 137 62 chr6 124371408 124371938 -25145099 + L1MC2 LINE L1 5559 6169 -175 4 1533 233 29 29 0 chr6 124371938 124371972 -25145065 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1533 704 136 18 9 chr6 124371974 124372085 -25144952 - PB1D9 SINE Alu -7 113 2 4 1533 1585 266 137 62 chr6 124372085 124372108 -25144929 + L1MC2 LINE L1 6170 6175 -169 4 1533 246 32 0 0 chr6 124372108 124372139 -25144898 + (TTG)n Simple_repeat Simple_repeat 2 32 0 4 1533 1107 85 0 0 chr6 124372139 124372280 -25144757 - B1_Mus1 SINE Alu -5 143 3 4 1533 1585 266 137 62 chr6 124372280 124372417 -25144620 + L1MC2 LINE L1 6176 6318 -26 4 1533 1551 212 10 250 chr6 124372697 124373501 -25143536 - RMER19C LTR ERVK 0 611 1 4 1533 183 42 0 0 chr6 124373506 124373530 -25143507 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1533 392 255 19 29 chr6 124373669 124373774 -25143263 + PB1D10 SINE Alu 1 104 -13 4 1533 321 303 119 40 chr6 124374170 124374321 -25142716 + MLT1J1-int LTR MaLR 1175 1337 -50 4 1533 563 319 47 23 chr6 124374345 124374560 -25142477 + MLT1J1 LTR MaLR 9 228 -216 4 1533 644 258 15 0 chr6 124374574 124374706 -25142331 + B4A SINE B4 87 220 -72 4 1533 250 325 15 80 chr6 124374632 124374769 -25142268 + MLT1J1 LTR MaLR 240 367 -145 4 1533 648 279 74 62 chr6 124374853 124375109 -25141928 - MER46C DNA MER2_type 0 338 80 4 1533 2333 75 3 45 chr6 124375232 124375568 -25141469 + RLTRETN_Mm LTR ERVK 1 322 0 4 1533 732 258 128 33 chr6 124375912 124376185 -25140852 + RMER15 LTR ERVL 261 559 -16 4 1533 242 330 32 111 chr6 124376546 124376672 -25140365 + PB1D10 SINE Alu 1 116 -1 4 1533 531 0 0 0 chr6 124377274 124377333 -25139704 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 1533 288 0 0 0 chr6 124378480 124378512 -25138525 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1533 513 0 0 0 chr6 124378512 124378569 -25138468 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1533 205 324 9 69 chr6 124381060 124381176 -25135861 + G-rich Low_complexity Low_complexity 5 113 0 5 1533 448 349 95 11 chr6 124385394 124385658 -25131379 - MARNA DNA Mariner -167 419 134 5 1533 255 103 0 0 chr6 124386085 124386124 -25130913 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 1533 378 0 0 0 chr6 124386128 124386170 -25130867 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1533 453 196 53 114 chr6 124386174 124386306 -25130731 - RSINE1 SINE B4 -17 148 25 5 1533 203 105 53 0 chr6 124386322 124386360 -25130677 + T-rich Low_complexity Low_complexity 4 43 0 5 1533 276 263 48 81 chr6 124386360 124386484 -25130553 - PB1D9 SINE Alu 0 120 1 5 1533 190 296 18 53 chr6 124386494 124386551 -25130486 + L2a LINE L2 3354 3408 -18 5 1533 287 300 29 0 chr6 124387111 124387181 -25129856 - RSINE1 SINE B4 -37 128 57 5 1534 852 178 7 7 chr6 124389065 124389212 -25127825 + B1_Mur1 SINE Alu 3 149 0 5 1534 307 341 0 0 chr6 124389521 124389606 -25127431 + ID_B1 SINE B4 83 167 -57 5 1534 433 187 95 42 chr6 124389537 124389632 -25127405 + PB1D10 SINE Alu 18 117 0 5 1534 331 224 0 106 chr6 124389962 124389973 -25127064 + MT2B2 LTR ERVL 156 157 -427 5 1534 531 296 0 27 chr6 124389973 124390122 -25126915 + B1F SINE Alu 3 147 -2 5 1534 23 0 0 0 chr6 124390391 124390414 -25126623 + AT_rich Low_complexity Low_complexity 1 23 0 5 1534 652 228 54 70 chr6 124390414 124390602 -25126435 + B3A SINE B2 30 216 0 5 1534 1164 54 0 20 chr6 124390608 124390758 -25126279 + B1_Mus1 SINE Alu 1 147 -1 5 1534 585 240 20 33 chr6 124390816 124390967 -25126070 + B1_Mur1 SINE Alu 1 149 0 5 1534 261 0 0 0 chr6 124391116 124391145 -25125892 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1534 408 242 115 30 chr6 124391161 124391296 -25125741 + MLT1A1 LTR MaLR 190 392 -16 5 1534 443 277 39 39 chr6 124391324 124391478 -25125559 + MLT1A1-int LTR MaLR 22 175 -1560 5 1534 752 292 33 37 chr6 124391486 124391728 -25125309 - B4A SINE B4 -48 244 4 5 1534 495 304 81 47 chr6 124391733 124391944 -25125093 + MLT1A1-int LTR MaLR 201 419 -1316 5 1534 640 205 9 0 chr6 124391944 124392056 -25124981 + B3A SINE B2 1 113 -85 5 1534 369 240 0 135 chr6 124393157 124393268 -25123769 + B3A SINE B2 85 180 -18 5 1534 521 281 232 18 chr6 124393295 124393571 -25123466 + MLT1A1-int LTR MaLR 407 741 -994 5 1534 531 306 90 102 chr6 124393726 124394159 -25122878 + MLT1A1-int LTR MaLR 979 1489 -246 5 1534 372 309 125 39 chr6 124394094 124394222 -25122815 - ID_B1 SINE B4 -78 146 8 5 1534 991 287 48 0 chr6 124394262 124394534 -25122503 + B4A SINE B4 3 287 -5 5 1534 815 289 98 49 chr6 124394592 124394609 -25122428 + MLT1A1-int LTR MaLR 1373 1389 -346 5 1534 598 202 0 0 chr6 124394609 124394708 -25122329 + PB1D10 SINE Alu 5 103 -14 5 1534 815 289 98 49 chr6 124394708 124395036 -25122001 + MLT1A1-int LTR MaLR 1390 1735 0 5 1534 286 314 58 70 chr6 124395050 124395221 -25121816 + MLT1A1 LTR MaLR 19 187 -178 5 1534 323 265 20 7 chr6 124395228 124395380 -25121657 + CT-rich Low_complexity Low_complexity 1 154 0 5 1534 399 201 10 53 chr6 124395438 124395558 -25121479 + MLT1A1 LTR MaLR 272 404 -4 5 1534 480 204 114 19 chr6 124395558 124395663 -25121374 + PB1D10 SINE Alu 1 115 -2 5 1534 387 0 0 0 chr6 124396100 124396143 -25120894 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 5 1534 264 289 35 96 chr6 124396347 124396462 -25120575 + PB1D10 SINE Alu 10 117 0 5 1534 229 287 115 0 chr6 124396634 124396721 -25120316 - L2 LINE L2 -807 2612 2516 5 1534 446 252 46 30 chr6 124396974 124397105 -25119932 + B1F1 SINE Alu 9 141 -8 5 1534 1683 31 0 0 chr6 124397130 124397322 -25119715 + B2_Mm1a SINE B2 1 192 -1 5 1534 254 231 38 19 chr6 124397338 124397391 -25119646 + ID4_ SINE ID 1 54 -29 5 1534 697 302 39 15 chr6 124397667 124397872 -25119165 + ID_B1 SINE B4 14 223 -1 5 1534 766 220 98 16 chr6 124398155 124398349 -25118688 + B3 SINE B2 1 210 -6 5 1534 248 0 0 30 chr6 124398690 124398723 -25118314 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 5 1534 279 310 42 33 chr6 124398966 124399086 -25117951 - MER58B DNA MER1_type -1 340 220 5 1534 211 284 107 13 chr6 124399318 124399393 -25117644 + MIR SINE MIR 41 122 -86 5 1534 231 292 24 42 chr6 124399982 124400150 -25116887 + GA-rich Low_complexity Low_complexity 2 166 0 5 1534 229 171 0 24 chr6 124400159 124400201 -25116836 + ID4 SINE ID 33 73 -10 5 1534 266 282 18 35 chr6 124400203 124400317 -25116720 + GA-rich Low_complexity Low_complexity 3 114 0 5 1534 402 309 8 23 chr6 124401714 124401843 -25115194 + PB1 SINE Alu 1 127 0 5 1534 387 222 16 22 chr6 124402474 124402586 -25114451 - B1_Mur2 SINE Alu 0 149 40 5 1534 668 173 18 0 chr6 124402588 124403051 -25113986 + CT-rich Low_complexity Low_complexity 1 471 0 5 1534 262 93 0 85 chr6 124403051 124403098 -25113939 - PB1D9 SINE Alu -65 55 13 5 1534 489 197 287 0 chr6 124403130 124403252 -25113785 - ID_B1 SINE B4 -18 206 50 5 1534 189 0 0 0 chr6 124403398 124403419 -25113618 + (ATG)n Simple_repeat Simple_repeat 1 21 0 5 1534 1034 112 0 7 chr6 124403454 124403598 -25113439 + B1_Mur4 SINE Alu 8 150 0 5 1534 355 240 39 39 chr6 124403649 124403753 -25113284 - PB1D10 SINE Alu -13 104 1 5 1534 452 234 0 0 chr6 124404368 124404445 -25112592 + ID4 SINE ID 1 77 -6 5 1534 357 62 0 0 chr6 124404450 124404498 -25112539 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1534 246 32 0 0 chr6 124404582 124404613 -25112424 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 5 1534 1188 41 7 27 chr6 124404619 124404769 -25112268 - B1_Mus2 SINE Alu 0 147 1 5 1534 549 195 86 1 chr6 124404769 124404890 -25112147 + B1F SINE Alu 19 148 -1 5 1534 1410 276 83 15 chr6 124404927 124405383 -25111654 + Lx6 LINE L1 6947 7433 -27 5 1534 214 261 261 0 chr6 124405419 124405484 -25111553 + ID4_ SINE ID 2 83 0 5 1534 252 313 0 0 chr6 124405485 124405552 -25111485 + G-rich Low_complexity Low_complexity 3 69 0 5 1534 310 268 0 58 chr6 124405811 124405914 -25111123 + PB1D10 SINE Alu 2 98 -19 5 1534 728 207 7 7 chr6 124406111 124406247 -25110790 + ID_B1 SINE B4 82 217 -7 5 1534 247 163 39 39 chr6 124406203 124406254 -25110783 + PB1D7 SINE Alu 68 118 -2 5 1534 338 218 11 54 chr6 124406291 124406383 -25110654 + B4A SINE B4 82 169 -123 5 1534 640 158 0 50 chr6 124406302 124406422 -25110615 + PB1D9 SINE Alu 6 119 -1 5 1534 338 339 9 0 chr6 124407296 124407411 -25109626 + PB1 SINE Alu 1 116 -11 5 1534 401 331 35 21 chr6 124407433 124407575 -25109462 + B1F SINE Alu 5 148 -1 5 1534 803 198 11 0 chr6 124407575 124407752 -25109285 + GA-rich Low_complexity Low_complexity 2 180 0 5 1534 21 0 0 0 chr6 124408513 124408534 -25108503 + GC_rich Low_complexity Low_complexity 1 21 0 5 1534 33 0 0 0 chr6 124408910 124408943 -25108094 + AT_rich Low_complexity Low_complexity 1 33 0 5 1534 1282 91 37 16 chr6 124408943 124409133 -25107904 + B2_Mm2 SINE B2 2 195 0 5 1534 1099 112 148 35 chr6 124409369 124409572 -25107465 - URR1A DNA MER1_type 0 226 1 5 1534 228 344 0 0 chr6 124411042 124411106 -25105931 - MIRb SINE MIR -114 154 91 5 1534 328 297 12 42 chr6 124413607 124413772 -25103265 + CT-rich Low_complexity Low_complexity 4 163 0 5 1534 199 71 48 0 chr6 124415291 124415333 -25101704 + (CAAAAA)n Simple_repeat Simple_repeat 6 49 0 5 1534 207 0 0 0 chr6 124416172 124416195 -25100842 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1534 21 0 0 0 chr6 124416197 124416218 -25100819 + AT_rich Low_complexity Low_complexity 1 21 0 5 1534 2667 57 3 0 chr6 124416271 124416606 -25100431 - L1Md_F2 LINE L1 0 6582 6247 5 1534 722 198 0 0 chr6 124417490 124417611 -25099426 - B3 SINE B2 -95 121 1 5 1534 300 143 0 0 chr6 124417920 124417990 -25099047 + (CCCCAG)n Simple_repeat Simple_repeat 3 72 0 5 1534 351 44 0 0 chr6 124418176 124418221 -25098816 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1534 669 224 133 34 chr6 124418245 124418509 -25098528 + MER33 DNA MER1_type 24 313 -11 5 1534 182 297 66 141 chr6 124418543 124418770 -25098267 + L2 LINE L2 2729 2938 -481 5 1534 357 287 155 0 chr6 124418835 124418964 -25098073 + B1F SINE Alu 1 149 0 5 1534 873 291 26 18 chr6 124418973 124419200 -25097837 + B4 SINE B4 2 230 -62 5 1534 1043 23 16 0 chr6 124419314 124419443 -25097594 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 5 1534 277 174 14 14 chr6 124419464 124419534 -25097503 + GA-rich Low_complexity Low_complexity 5 74 0 5 1534 326 225 24 24 chr6 124420664 124420746 -25096291 - RSINE1 SINE B4 -40 125 44 5 1534 3230 26 42 3 chr6 124422002 124422383 -25094654 + MTA_Mm LTR MaLR 1 396 0 5 1534 1063 301 64 43 chr6 124424755 124425232 -25091805 + RLTR17 LTR ERVK 28 565 -127 5 1534 675 94 0 0 chr6 124425343 124425439 -25091598 + (TCC)n Simple_repeat Simple_repeat 2 97 0 5 1534 925 121 152 6 chr6 124425467 124425479 -25091558 - B2_Mm2 SINE B2 0 195 184 5 1534 180 0 0 0 chr6 124425479 124425499 -25091538 + (TCC)n Simple_repeat Simple_repeat 3 22 0 5 1534 925 121 152 6 chr6 124425499 124425644 -25091393 - B2_Mm2 SINE B2 -12 183 15 5 1534 391 130 173 0 chr6 124425658 124425769 -25091268 - B2_Mm2 SINE B2 0 195 46 5 1534 989 78 169 7 chr6 124425796 124425950 -25091087 - B2_Mm1t SINE B2 -14 179 1 5 1534 1137 152 102 10 chr6 124426000 124426206 -25090831 - URR1A DNA MER1_type 0 226 2 5 1534 498 242 67 104 chr6 124427651 124427891 -25089146 - CYRA11_Mm Unknown Y-chromosome -215 402 172 5 1534 1127 155 21 16 chr6 124427702 124427892 -25089145 + URR1B DNA MER1_type 35 225 0 5 1534 360 326 114 49 chr6 124427910 124428155 -25088882 + ORR1D2 LTR MaLR 106 366 -4 5 1534 479 255 142 46 chr6 124428234 124428452 -25088585 + MLT1F1 LTR MaLR 329 567 -2 5 1534 478 347 59 56 chr6 124429215 124429520 -25087517 - ORR1E LTR MaLR -53 306 1 5 1534 240 339 53 0 chr6 124429724 124429829 -25087208 - L2c LINE L2 -46 3341 3222 6 1534 28 0 0 0 chr6 124429971 124429999 -25087038 + AT_rich Low_complexity Low_complexity 1 28 0 6 1534 1049 37 90 0 chr6 124430163 124430297 -25086740 + B1_Mus2 SINE Alu 2 147 0 6 1534 181 328 60 0 chr6 124430326 124430393 -25086644 - MIRm SINE MIR -117 159 89 6 1534 239 211 35 0 chr6 124430453 124430510 -25086527 - MER20 DNA MER1_type -81 138 80 6 1534 189 0 0 0 chr6 124430521 124430542 -25086495 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1534 418 368 40 9 chr6 124430646 124430868 -25086169 - MIR SINE MIR -14 248 20 6 1534 567 248 32 19 chr6 124431450 124431606 -25085431 + RSINE1 SINE B4 3 160 -5 6 1534 515 250 145 32 chr6 124432104 124432290 -25084747 + B3 SINE B2 3 209 -7 6 1534 360 260 14 0 chr6 124432317 124432390 -25084647 + B1F SINE Alu 25 98 -51 6 1534 227 270 243 48 chr6 124432548 124432754 -25084283 - B4 SINE B4 -45 247 2 6 1534 420 293 0 0 chr6 124432768 124432867 -25084170 - PB1D10 SINE Alu 0 117 19 6 1534 838 242 91 29 chr6 124433387 124433629 -25083408 - MTE2b LTR MaLR -9 370 114 6 1534 683 199 15 15 chr6 124433632 124433765 -25083272 + B1_Mur2 SINE Alu 16 148 -1 6 1534 316 196 0 0 chr6 124433774 124433825 -25083212 - MTE2b LTR MaLR -258 121 71 6 1534 306 229 47 148 chr6 124433825 124433899 -25083138 - MT2A LTR ERVL -409 121 10 6 1534 256 381 55 33 chr6 124433959 124433994 -25083043 - MLT1A1 LTR MaLR -4 370 336 6 1534 1211 64 98 12 chr6 124433994 124434146 -25082891 + B2_Mm2 SINE B2 3 159 -36 6 1534 816 11 0 0 chr6 124434146 124434239 -25082798 + (TA)n Simple_repeat Simple_repeat 1 93 0 6 1534 1211 64 98 12 chr6 124434239 124434259 -25082778 + B2_Mm2 SINE B2 160 190 -5 6 1534 257 301 84 48 chr6 124434259 124434405 -25082632 - MLT1A1 LTR MaLR -44 364 187 6 1534 246 313 99 63 chr6 124434474 124434739 -25082298 + MTEb LTR MaLR 94 370 -9 6 1534 437 219 38 9 chr6 124434889 124434995 -25082042 - Charlie1 DNA MER1_type -33 2748 2640 6 1534 504 310 99 5 chr6 124434982 124435183 -25081854 - Charlie1 DNA MER1_type -2545 236 17 6 1534 252 303 22 0 chr6 124435260 124435349 -25081688 - L1MEf LINE L1 -4433 1767 1677 6 1534 459 195 106 0 chr6 124435353 124435466 -25081571 + B3A SINE B2 1 125 -73 6 1534 2196 115 34 22 chr6 124435552 124435909 -25081128 + RLTR31A_Mm LTR ERVK 1 361 -223 6 1534 225 0 0 0 chr6 124435998 124436023 -25081014 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1534 1131 82 0 0 chr6 124436025 124436171 -25080866 - B1_Mus1 SINE Alu -1 147 2 6 1534 241 94 0 0 chr6 124436171 124436203 -25080834 + RLTR31A_Mm LTR ERVK 526 557 0 6 1534 249 278 120 22 chr6 124436255 124436347 -25080690 - PB1D7 SINE Alu 0 120 20 6 1534 407 106 0 15 chr6 124436469 124436536 -25080501 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 6 1534 283 155 250 14 chr6 124436541 124436613 -25080424 + PB1D10 SINE Alu 29 117 0 6 1534 288 250 35 96 chr6 124436629 124436744 -25080293 + PB1D10 SINE Alu 10 117 0 6 1534 270 322 23 90 chr6 124436768 124436784 -25080253 + ID_B1 SINE B4 82 205 -19 6 1534 476 282 34 0 chr6 124436784 124436901 -25080136 + B1_Mur1 SINE Alu 10 130 -19 6 1534 1976 121 102 0 chr6 124436907 124437222 -25079815 + ORR1B1 LTR MaLR 4 350 -44 6 1534 227 316 106 58 chr6 124437765 124437836 -25079201 + ID_B1 SINE B4 87 162 -62 6 1534 1305 227 81 89 chr6 124437836 124437979 -25079058 + MTE2b LTR MaLR 1 113 -266 6 1534 1766 184 90 3 chr6 124437979 124438202 -25078835 + ORR1D1 LTR MaLR 1 228 -146 6 1534 309 51 0 0 chr6 124438202 124438241 -25078796 + (CCTG)n Simple_repeat Simple_repeat 4 42 0 6 1534 1766 184 90 3 chr6 124438241 124438361 -25078676 + ORR1D1 LTR MaLR 229 373 -1 6 1534 1305 227 81 89 chr6 124438361 124438599 -25078438 + MTE2b LTR MaLR 114 379 0 6 1534 417 148 0 0 chr6 124438599 124438658 -25078379 + ID_B1 SINE B4 164 222 -2 6 1534 1251 231 167 57 chr6 124438999 124439370 -25077667 - MTC LTR MaLR -2 419 8 6 1534 277 361 41 8 chr6 124439446 124439569 -25077468 - MTEb LTR MaLR 0 379 253 6 1534 678 241 144 20 chr6 124439577 124439772 -25077265 + ID_B1 SINE B4 2 220 -4 6 1534 1094 87 0 7 chr6 124440191 124440341 -25076696 + B2_Mm2 SINE B2 46 194 -1 6 1534 252 200 0 0 chr6 124440827 124440897 -25076140 + CT-rich Low_complexity Low_complexity 1 70 0 6 1534 189 139 0 0 chr6 124441026 124441069 -25075968 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 6 1534 244 130 65 0 chr6 124441070 124441116 -25075921 - ID_B1 SINE B4 -2 222 174 6 1534 458 149 202 22 chr6 124441076 124441165 -25075872 - B1_Mus1 SINE Alu -43 105 1 6 1534 336 211 107 78 chr6 124441077 124441180 -25075857 - MT2B LTR ERVL -343 258 153 6 1534 1470 188 33 19 chr6 124441212 124441530 -25075507 - ORR1C2 LTR MaLR 0 384 5 6 1534 26 30 0 0 chr6 124442173 124442206 -25074831 + AT_rich Low_complexity Low_complexity 1 33 0 6 1534 398 109 4 2 chr6 124442212 124442273 -25074764 - B2_Mm2 SINE B2 -91 107 46 6 1534 1343 80 23 0 chr6 124442285 124442461 -25074576 - B2_Mm2 SINE B2 -14 181 2 6 1534 740 175 0 0 chr6 124442679 124442805 -25074232 + B1F SINE Alu 22 147 -2 6 1534 522 0 0 0 chr6 124443336 124443394 -25073643 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1534 398 253 0 33 chr6 124444625 124444645 -25072392 - PB1D10 SINE Alu -7 110 93 6 1534 266 280 217 17 chr6 124444645 124444765 -25072272 + B1F SINE Alu 1 144 -5 6 1534 398 253 0 33 chr6 124444765 124444834 -25072203 - PB1D10 SINE Alu -25 92 24 6 1534 218 118 0 89 chr6 124444959 124444980 -25072057 + A-rich Low_complexity Low_complexity 4 21 0 6 1534 832 112 32 0 chr6 124444980 124445105 -25071932 + B1_Mus1 SINE Alu 1 129 -19 6 1534 218 118 0 89 chr6 124445105 124445139 -25071898 + A-rich Low_complexity Low_complexity 22 54 0 6 1534 339 275 133 31 chr6 124445194 124445487 -25071550 - HAL1 LINE L1 -111 2396 2074 6 1534 464 232 151 0 chr6 124445590 124445775 -25071262 - HAL1 LINE L1 -899 1608 1396 6 1534 457 250 15 66 chr6 124445828 124445965 -25071072 - B3A SINE B2 -10 188 59 6 1534 328 317 121 22 chr6 124445969 124446056 -25070981 - HAL1 LINE L1 -1296 1211 1114 6 1534 359 238 38 0 chr6 124446056 124446136 -25070901 - ID4_ SINE ID 0 83 1 6 1534 328 317 121 22 chr6 124446136 124446419 -25070618 - HAL1 LINE L1 -1394 1113 804 6 1534 430 274 17 25 chr6 124446478 124446598 -25070439 - MLT1A0 LTR MaLR 0 365 247 6 1534 360 293 72 19 chr6 124446743 124446939 -25070098 - L1MEc LINE L1 -4109 2291 2118 6 1534 1007 90 0 65 chr6 124446949 124447103 -25069934 - B1_Mus1 SINE Alu 0 148 5 6 1534 389 184 0 0 chr6 124447933 124448009 -25069028 - ID4 SINE ID -7 76 1 6 1534 941 167 0 0 chr6 124448179 124448323 -25068714 - B1_Mur3 SINE Alu -1 148 5 6 1534 535 92 0 22 chr6 124448409 124448498 -25068539 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 6 1534 237 217 53 126 chr6 124448649 124448744 -25068293 + MT2B LTR ERVL 151 238 -363 6 1534 504 250 54 39 chr6 124448676 124448805 -25068232 + ID_B1 SINE B4 94 224 0 6 1534 1014 225 16 69 chr6 124448813 124449119 -25067918 + B4A SINE B4 3 292 0 6 1534 223 182 30 15 chr6 124449152 124449219 -25067818 + GA-rich Low_complexity Low_complexity 2 69 0 6 1534 326 216 9 121 chr6 124449438 124449484 -25067553 + ID_B1 SINE B4 121 223 -1 6 1534 433 145 0 14 chr6 124449484 124449554 -25067483 + B1F SINE Alu 79 147 -2 6 1534 392 275 38 0 chr6 124449564 124449644 -25067393 + B1F2 SINE Alu 1 83 -66 6 1534 1919 141 108 6 chr6 124450138 124450480 -25066557 - RLTR14 LTR ERV1 0 382 6 6 1534 2399 236 48 60 chr6 124450480 124450748 -25066289 - RLTR14-int LTR ERV1 -10 5307 5035 6 1534 195 42 0 0 chr6 124450748 124450772 -25066265 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 6 1534 2399 236 48 60 chr6 124450772 124451334 -25065703 - RLTR14-int LTR ERV1 -283 5034 4487 6 1534 2065 164 216 30 chr6 124451525 124451994 -25065043 - RLTR14-int LTR ERV1 -838 4479 3923 6 1534 4412 168 33 84 chr6 124451995 124452743 -25064294 - RLTR14-int LTR ERV1 -2424 2893 2182 6 1534 525 32 0 0 chr6 124452743 124452806 -25064231 + (TTGG)n Simple_repeat Simple_repeat 4 66 0 6 1534 4412 168 33 84 chr6 124452806 124452931 -25064106 - RLTR14-int LTR ERV1 -3136 2181 2059 6 1534 1307 94 22 0 chr6 124452931 124453112 -25063925 - B2_Mm1t SINE B2 -8 185 1 6 1534 4412 259 36 32 chr6 124453112 124453702 -25063335 - RLTR14-int LTR ERV1 -3259 2058 1749 6 1534 639 168 12 169 chr6 124453715 124453887 -25063150 - RLTR14-int LTR ERV1 -3857 1460 1316 6 1534 727 179 29 15 chr6 124454024 124454160 -25062877 - RLTR14-int LTR ERV1 -4030 1287 1150 6 1534 2085 137 0 60 chr6 124454160 124454510 -25062527 - ORR1A4 LTR MaLR 0 329 1 6 1534 1492 190 37 141 chr6 124454511 124454916 -25062121 - RLTR14 LTR ERV1 -13 369 7 6 1534 1328 62 73 0 chr6 124455953 124456131 -25060906 - B2_Mm2 SINE B2 -3 192 2 6 1534 765 164 238 6 chr6 124456158 124456188 -25060849 - B3 SINE B2 -4 212 159 6 1534 269 109 0 21 chr6 124456188 124456235 -25060802 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1534 765 164 238 6 chr6 124456235 124456376 -25060661 - B3 SINE B2 -58 158 2 6 1534 464 349 33 11 chr6 124456469 124456779 -25060258 - L1M5 LINE L1 -2130 5752 5441 6 1534 284 258 30 0 chr6 124457386 124457452 -25059585 + ID4_ SINE ID 5 72 -11 6 1534 189 0 0 0 chr6 124457456 124457477 -25059560 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1534 363 265 199 0 chr6 124457479 124457615 -25059422 - L1MB7 LINE L1 -184 6000 5838 6 1534 225 0 0 0 chr6 124457627 124457652 -25059385 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 6 1534 1172 37 0 0 chr6 124457654 124457790 -25059247 - B1_Mus1 SINE Alu -12 136 1 6 1534 556 287 29 0 chr6 124457794 124457930 -25059107 - ID_B1 SINE B4 0 224 85 6 1534 1087 88 0 20 chr6 124459248 124459399 -25057638 + B1_Mus1 SINE Alu 1 148 0 6 1534 641 187 9 6 chr6 124459540 124459660 -25057377 - PB1D7 SINE Alu 0 120 6 6 1534 194 330 75 17 chr6 124459858 124459978 -25057059 - MIRc SINE MIR -62 206 80 6 1534 380 196 54 14 chr6 124460403 124460504 -25056533 + PB1D10 SINE Alu 13 117 0 6 1534 648 140 184 0 chr6 124460508 124460622 -25056415 + B1_Mus1 SINE Alu 7 141 -7 6 1534 198 71 0 0 chr6 124460624 124460652 -25056385 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 6 1534 459 0 0 0 chr6 124460768 124460819 -25056218 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1534 537 244 31 0 chr6 124460823 124460950 -25056087 + B3 SINE B2 85 215 -1 6 1534 300 283 92 30 chr6 124460962 124461093 -25055944 + HAL1b LINE L1 1859 1997 -12 6 1534 22 35 0 0 chr6 124461101 124461130 -25055907 + AT_rich Low_complexity Low_complexity 1 29 0 6 1534 208 295 21 83 chr6 124461240 124461336 -25055701 - L4 LINE RTE -517 1512 1423 6 1534 402 21 0 0 chr6 124461413 124461460 -25055577 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1534 4753 40 0 0 chr6 124464667 124465224 -25051813 + L1Md_T LINE L1 6026 6582 0 7 1534 688 274 6 30 chr6 124465275 124465444 -25051593 + RSINE1 SINE B4 1 165 0 7 1534 251 233 10 19 chr6 124465433 124465512 -25051525 + B1F SINE Alu 43 148 -1 7 1534 2352 185 68 6 chr6 124465950 124466446 -25050591 - RLTR11A2 LTR ERVK 0 527 1 7 1534 280 253 10 90 chr6 124467963 124468063 -25048974 + ID_B1 SINE B4 133 224 0 7 1534 297 0 0 0 chr6 124468224 124468257 -25048780 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 1534 768 168 0 69 chr6 124468274 124468434 -25048603 + B1_Mur4 SINE Alu 2 150 0 7 1534 453 50 0 0 chr6 124468434 124468494 -25048543 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 1534 438 200 25 0 chr6 124468545 124468625 -25048412 - PB1D10 SINE Alu -16 101 20 7 1534 471 243 78 35 chr6 124468667 124468808 -25048229 + B1F1 SINE Alu 1 147 -2 7 1534 216 0 0 0 chr6 124470016 124470040 -25046997 + (CAA)n Simple_repeat Simple_repeat 3 26 0 7 1534 415 261 7 98 chr6 124470171 124470324 -25046713 + HAL1-2a_MD LINE L1 2369 2507 -517 7 1534 330 182 0 70 chr6 124470530 124470601 -25046436 - ID4_ SINE ID -14 69 4 7 1534 780 139 0 0 chr6 124470639 124470811 -25046226 + (TC)n Simple_repeat Simple_repeat 2 173 0 7 1534 335 302 70 0 chr6 124470816 124470902 -25046135 - ID_B1 SINE B4 -46 178 87 7 1534 232 289 86 32 chr6 124471027 124471120 -25045917 + MIRb SINE MIR 123 220 -48 7 1534 368 339 39 0 chr6 124471162 124471289 -25045748 + B1F SINE Alu 2 133 -16 7 1534 209 324 7 68 chr6 124472030 124472176 -25044861 + G-rich Low_complexity Low_complexity 5 141 0 7 1534 1348 224 25 9 chr6 124473196 124473511 -25043526 + RLTR46 LTR ERVK 1 320 0 7 1534 1217 96 84 0 chr6 124473630 124473789 -25043248 + B2_Mm1a SINE B2 1 160 -33 7 1534 495 0 0 0 chr6 124473789 124473844 -25043193 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 7 1534 1217 96 84 0 chr6 124473844 124473862 -25043175 + B2_Mm1a SINE B2 161 191 -2 7 1534 982 99 0 0 chr6 124473869 124474000 -25043037 + B1_Mus1 SINE Alu 6 136 -12 7 1534 1122 50 0 0 chr6 124474003 124474144 -25042893 + (TAGA)n Simple_repeat Simple_repeat 4 144 0 7 1534 233 257 75 81 chr6 124474151 124474278 -25042759 + B3 SINE B2 38 172 -26 7 1534 3456 95 122 0 chr6 124474642 124475167 -25041870 + RLTR33 LTR ERVK 10 598 -80 7 1534 522 113 0 0 chr6 124475661 124475732 -25041305 + RLTR33 LTR ERVK 608 678 0 7 1534 334 268 40 20 chr6 124475733 124475832 -25041205 - PB1 SINE Alu -22 105 5 7 1534 701 274 33 9 chr6 124475886 124476096 -25040941 - B3 SINE B2 0 216 2 7 1534 443 285 27 68 chr6 124476207 124476354 -25040683 + ID_B1 SINE B4 83 223 -1 7 1534 1205 184 24 0 chr6 124476381 124476588 -25040449 + B3 SINE B2 5 216 0 7 1534 263 50 50 0 chr6 124476694 124476734 -25040303 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7 1534 597 49 0 0 chr6 124476735 124476816 -25040221 + (TG)n Simple_repeat Simple_repeat 2 82 0 7 1534 271 340 103 0 chr6 124476825 124476922 -25040115 - RSINE1 SINE B4 -13 152 46 7 1534 885 81 0 0 chr6 124476942 124477078 -25039959 + (TC)n Simple_repeat Simple_repeat 1 136 0 7 1534 469 227 9 26 chr6 124477088 124477201 -25039836 - PB1D10 SINE Alu -3 114 4 7 1534 406 239 43 0 chr6 124477336 124477428 -25039609 + ID_B1 SINE B4 129 224 0 7 1534 866 213 91 0 chr6 124477576 124477773 -25039264 - B3 SINE B2 0 216 2 7 1534 519 17 0 0 chr6 124477786 124477846 -25039191 + (TTG)n Simple_repeat Simple_repeat 1 60 0 7 1534 445 224 22 94 chr6 124477888 124478026 -25039011 - B1F SINE Alu 0 149 22 7 1534 290 205 65 148 chr6 124477893 124478048 -25038989 - ID_B1 SINE B4 -1 223 82 7 1534 446 247 0 0 chr6 124478302 124478379 -25038658 - ID4_ SINE ID -1 82 6 7 1534 246 326 126 52 chr6 124478383 124478574 -25038463 - B3 SINE B2 -2 214 10 7 1534 751 229 0 60 chr6 124478409 124478576 -25038461 - RSINE1 SINE B4 0 165 9 7 1534 852 178 20 7 chr6 124478611 124478758 -25038279 - B1_Mur1 SINE Alu 0 149 1 7 1534 233 271 51 36 chr6 124478774 124478912 -25038125 + RLTR44D LTR ERVK 228 367 -119 7 1534 400 202 67 48 chr6 124478996 124479100 -25037937 - RSINE1 SINE B4 -16 149 44 7 1534 578 260 131 17 chr6 124479202 124479378 -25037659 + ID_B1 SINE B4 12 207 -17 7 1534 456 230 25 42 chr6 124479444 124479562 -25037475 + URR1B DNA MER1_type 110 225 0 7 1534 223 177 109 36 chr6 124479716 124479796 -25037241 + PB1D9 SINE Alu 46 138 -11 7 1534 261 0 0 0 chr6 124480049 124480078 -25036959 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1534 1111 80 0 0 chr6 124480078 124480215 -25036822 - B1_Mus1 SINE Alu -11 137 1 7 1534 431 226 148 19 chr6 124482185 124482293 -25034744 - PB1D10 SINE Alu -27 122 1 7 1534 222 289 160 19 chr6 124482202 124482308 -25034729 - B4 SINE B4 -100 192 72 7 1534 335 295 130 8 chr6 124482757 124482880 -25034157 + ID_B1 SINE B4 82 219 -5 7 1534 259 276 92 0 chr6 124482930 124483006 -25034031 - PB1D10 SINE Alu -31 86 4 7 1534 216 318 48 0 chr6 124482959 124483022 -25034015 - B4 SINE B4 -157 135 70 7 1534 396 0 0 0 chr6 124484556 124484600 -25032437 + (CCA)n Simple_repeat Simple_repeat 2 45 0 7 1534 399 296 93 0 chr6 124484604 124484712 -25032325 - B1F SINE Alu -8 141 24 7 1534 597 323 44 36 chr6 124484785 124485010 -25032027 - B4A SINE B4 -23 269 43 7 1534 279 0 0 0 chr6 124485498 124485529 -25031508 + (GA)n Simple_repeat Simple_repeat 2 32 0 7 1534 837 0 0 0 chr6 124485530 124485623 -25031414 + (GGGAA)n Simple_repeat Simple_repeat 2 94 0 7 1534 693 24 0 0 chr6 124485634 124485717 -25031320 + (GA)n Simple_repeat Simple_repeat 1 83 0 7 1534 346 309 27 18 chr6 124485751 124485863 -25031174 + PB1D10 SINE Alu 5 117 0 7 1534 346 217 0 0 chr6 124485870 124485939 -25031098 + ID4 SINE ID 2 70 -13 7 1534 248 77 26 0 chr6 124485964 124486003 -25031034 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 7 1534 467 250 0 26 chr6 124486030 124486145 -25030892 + PB1D10 SINE Alu 3 114 -3 7 1534 215 143 24 0 chr6 124486160 124486202 -25030835 + GA-rich Low_complexity Low_complexity 2 44 0 7 1534 313 320 85 71 chr6 124486868 124487221 -25029816 + ORR1E LTR MaLR 1 358 -1 7 1534 506 252 9 0 chr6 124487637 124487752 -25029285 + PB1D10 SINE Alu 1 116 -1 7 1534 224 157 20 0 chr6 124487755 124487806 -25029231 + (CAGAGA)n Simple_repeat Simple_repeat 2 53 0 7 1534 224 222 14 0 chr6 124487814 124487886 -25029151 + GA-rich Low_complexity Low_complexity 1 73 0 7 1534 760 303 110 28 chr6 124487889 124488280 -25028757 + Lx8 LINE L1 6967 7389 -84 7 1534 756 234 68 24 chr6 124488387 124488593 -25028444 + B3 SINE B2 2 216 0 7 1534 21 0 0 0 chr6 124488595 124488616 -25028421 + AT_rich Low_complexity Low_complexity 1 21 0 7 1534 686 283 19 14 chr6 124488626 124488841 -25028196 - B3 SINE B2 0 216 1 7 1534 554 221 10 0 chr6 124488985 124489089 -25027948 + PB1D10 SINE Alu 13 117 0 7 1534 464 198 83 0 chr6 124489392 124489488 -25027549 - PB1D10 SINE Alu -6 111 8 7 1534 774 186 0 19 chr6 124489514 124489664 -25027373 - B1_Mur4 SINE Alu 0 150 5 7 1534 423 256 1 10 chr6 124489846 124489949 -25027088 - PB1D10 SINE Alu -13 104 2 7 1534 278 250 28 0 chr6 124490637 124490709 -25026328 - B4A SINE B4 -217 75 2 7 1534 188 122 24 0 chr6 124491108 124491149 -25025888 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 7 1534 318 207 131 20 chr6 124491204 124491306 -25025731 + PB1D9 SINE Alu 17 126 -21 7 1534 341 275 43 52 chr6 124492806 124492921 -25024116 + RSINE1 SINE B4 8 121 -44 7 1534 336 292 160 0 chr6 124493046 124493152 -25023885 + B1F SINE Alu 2 124 -25 7 1534 451 301 0 17 chr6 124493173 124493288 -25023749 + ID_B1 SINE B4 94 206 -18 7 1534 1053 188 19 65 chr6 124493383 124493476 -25023561 + B3 SINE B2 6 93 -123 7 1534 1415 89 5 10 chr6 124493476 124493669 -25023368 - B2_Mm1t SINE B2 0 193 2 7 1534 1053 188 19 65 chr6 124493669 124493791 -25023246 + B3 SINE B2 94 211 -5 7 1534 234 91 0 0 chr6 124493834 124493867 -25023170 + (TCC)n Simple_repeat Simple_repeat 2 34 0 7 1534 531 149 0 0 chr6 124493873 124493994 -25023043 + (GA)n Simple_repeat Simple_repeat 2 122 0 7 1534 522 216 0 35 chr6 124495024 124495139 -25021898 - PB1D9 SINE Alu -1 119 9 7 1534 228 265 137 111 chr6 124495025 124495178 -25021859 - B4 SINE B4 -69 223 67 7 1534 219 207 84 42 chr6 124495186 124495303 -25021734 - B1_Mur2 SINE Alu 0 148 25 7 1534 574 238 75 30 chr6 124495552 124495751 -25021286 - B3 SINE B2 -6 210 3 7 1534 3682 38 52 15 chr6 124495867 124496325 -25020712 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1534 483 275 34 47 chr6 124496390 124496539 -25020498 - ID_B1 SINE B4 0 224 78 7 1534 23 0 0 0 chr6 124496739 124496762 -25020275 + AT_rich Low_complexity Low_complexity 1 23 0 7 1534 1169 124 45 11 chr6 124496842 124497021 -25020016 + B2_Mm2 SINE B2 2 186 -9 7 1534 450 243 45 9 chr6 124497058 124497170 -25019867 - PB1D7 SINE Alu -3 117 2 7 1534 299 134 50 20 chr6 124497175 124497274 -25019763 + (GTTTG)n Simple_repeat Simple_repeat 3 104 0 7 1534 293 150 0 48 chr6 124497266 124497339 -25019698 + (TTTG)n Simple_repeat Simple_repeat 1 69 0 7 1534 950 163 7 0 chr6 124497339 124497486 -25019551 - B1_Mur3 SINE Alu -1 148 1 7 1534 293 150 0 48 chr6 124497486 124497496 -25019541 + (TTTG)n Simple_repeat Simple_repeat 3 12 0 8 1534 390 100 0 0 chr6 124497546 124497606 -25019431 + (TTG)n Simple_repeat Simple_repeat 3 62 0 8 1534 365 294 26 83 chr6 124497699 124497855 -25019182 - RSINE1 SINE B4 -8 157 11 8 1534 223 266 0 30 chr6 124498001 124498067 -25018970 + GA-rich Low_complexity Low_complexity 2 65 0 8 1534 464 264 110 16 chr6 124498076 124498203 -25018834 - RSINE1 SINE B4 -26 139 1 8 1534 377 329 39 45 chr6 124498227 124498405 -25018632 + MLT1G LTR MaLR 39 215 -376 8 1534 690 137 82 30 chr6 124498691 124498826 -25018211 - B1_Mus2 SINE Alu -1 146 5 8 1534 306 0 0 0 chr6 124498843 124498877 -25018160 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1534 534 268 0 0 chr6 124498878 124498990 -25018047 - RSINE1 SINE B4 -51 114 3 8 1534 255 61 0 0 chr6 124499752 124499785 -25017252 + (GA)n Simple_repeat Simple_repeat 1 33 0 8 1534 204 40 0 0 chr6 124499907 124499932 -25017105 + (TTGG)n Simple_repeat Simple_repeat 4 28 0 8 1534 198 0 0 0 chr6 124499942 124499964 -25017073 + (TGG)n Simple_repeat Simple_repeat 1 22 0 8 1534 1984 156 34 69 chr6 124500019 124500426 -25016611 - RLTR9C LTR ERVK 0 393 1 1 1534 484 120 0 0 chr6 124500427 124500502 -25016535 - MMETn-int LTR ERVK -1 7405 7331 1 1534 4347 179 20 37 chr6 124500717 124502768 -25014269 - MMETn-int LTR ERVK -3321 4085 2356 1 1534 845 152 0 18 chr6 124503176 124503344 -25013693 - RLTR13D1 LTR ERVK -156 650 486 2 1534 2759 190 21 21 chr6 124503344 124503909 -25013128 - MMETn-int LTR ERVK -4409 2997 2433 1 1534 4300 184 27 88 chr6 124503920 124505045 -25011992 - MMETn-int LTR ERVK -3681 1163 108 3 1534 1640 175 68 71 chr6 124505185 124505579 -25011458 - RLTR9C LTR ERVK 0 393 1 4 1534 229 198 23 0 chr6 124505579 124505665 -25011372 + (TGG)n Simple_repeat Simple_repeat 3 90 0 5 1534 908 219 13 81 chr6 124505688 124505813 -25011224 - B4A SINE B4 -73 219 106 6 1534 910 150 14 0 chr6 124505813 124505960 -25011077 + B1_Mur3 SINE Alu 1 149 0 7 1534 908 219 13 81 chr6 124505960 124506068 -25010969 - B4A SINE B4 -187 105 2 6 1534 846 109 0 0 chr6 124506263 124506391 -25010646 + (TTCC)n Simple_repeat Simple_repeat 3 130 0 8 1534 337 282 107 0 chr6 124506394 124506497 -25010540 - ID_B1 SINE B4 -15 209 96 9 1534 270 136 0 0 chr6 124506665 124506709 -25010328 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 1 1534 415 248 0 18 chr6 124506709 124506820 -25010217 - B1_Mur4 SINE Alu -1 149 41 1 1534 214 235 0 0 chr6 124506827 124506878 -25010159 + CT-rich Low_complexity Low_complexity 3 53 0 1 1534 356 304 68 17 chr6 124507393 124507570 -25009467 + ERVL-int LTR ERVL 991 1176 -4581 1 1534 1940 178 70 3 chr6 124507739 124508122 -25008915 - MTC LTR MaLR -7 414 6 1 1534 326 164 0 0 chr6 124508124 124508179 -25008858 + ORR1E LTR MaLR 301 355 -4 1 1534 285 223 45 3 chr6 124508190 124508285 -25008752 - MTE2a LTR MaLR -274 105 1 1 1534 521 180 96 35 chr6 124508396 124508511 -25008526 + ID_B1 SINE B4 95 216 -8 1 1534 822 230 65 0 chr6 124508523 124508723 -25008314 + B3 SINE B2 4 216 0 1 1534 637 144 111 8 chr6 124508757 124508883 -25008154 + B1_Mur3 SINE Alu 11 149 0 1 1534 312 70 0 0 chr6 124508919 124508962 -25008075 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1534 804 231 63 47 chr6 124509013 124509268 -25007769 + RMER5 LTR ERV1 40 298 -236 2 1534 637 132 0 19 chr6 124509269 124509377 -25007660 + ORR1A2 LTR MaLR 1 106 -223 2 1534 856 77 76 8 chr6 124509417 124509548 -25007489 - B1_Mus1 SINE Alu 0 148 9 2 1534 1269 147 13 17 chr6 124509522 124509758 -25007279 + ORR1A2 LTR MaLR 85 319 -8 2 1534 791 242 21 21 chr6 124509762 124509998 -25007039 + RMER5 LTR ERV1 295 530 -4 2 1534 206 57 57 0 chr6 124510315 124510350 -25006687 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1534 399 68 0 0 chr6 124510708 124510767 -25006270 + (TGGA)n Simple_repeat Simple_repeat 2 60 0 2 1534 714 209 16 33 chr6 124510794 124510977 -25006060 + L1_Mur1 LINE L1 4462 4641 -1245 2 1534 706 138 8 35 chr6 124510992 124511134 -25005903 + RLTR13D5 LTR ERVK 729 844 -179 2 1534 240 281 12 35 chr6 124511814 124511899 -25005138 + ID_B1 SINE B4 140 222 -2 2 1534 252 296 0 0 chr6 124511909 124511990 -25005047 + ID4_ SINE ID 2 82 -1 2 1534 387 0 0 0 chr6 124512048 124512091 -25004946 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 3 1534 600 151 0 98 chr6 124512115 124512247 -25004790 + B1_Mur3 SINE Alu 25 143 -6 3 1534 460 206 7 7 chr6 124512247 124512384 -25004653 + GA-rich Low_complexity Low_complexity 1 137 0 3 1534 316 269 26 0 chr6 124512441 124512519 -25004518 - PB1D10 SINE Alu -16 101 22 3 1534 452 243 79 0 chr6 124512585 124512705 -25004332 + B1F SINE Alu 21 148 -1 3 1534 294 239 0 0 chr6 124513910 124513998 -25003039 + A-rich Low_complexity Low_complexity 1 88 0 3 1534 366 247 17 117 chr6 124514188 124514367 -25002670 + HAL1-2a_MD LINE L1 2347 2507 -517 3 1534 6048 31 3 0 chr6 124514681 124515382 -25001655 - L1Md_F2 LINE L1 -1 6581 5879 3 1534 865 116 30 0 chr6 124515417 124515581 -25001456 + (TC)n Simple_repeat Simple_repeat 2 170 0 3 1534 324 330 66 0 chr6 124515581 124515672 -25001365 - ID_B1 SINE B4 -41 183 87 3 1534 606 28 0 0 chr6 124515767 124515839 -25001198 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 4 1534 215 290 84 21 chr6 124515840 124515935 -25001102 + MIRb SINE MIR 120 220 -48 4 1534 309 311 19 0 chr6 124515978 124516104 -25000933 + PB1D10 SINE Alu 3 133 -16 4 1534 1101 88 0 13 chr6 124516941 124517091 -24999946 + B1_Mus1 SINE Alu 1 148 0 4 1534 589 196 9 6 chr6 124517220 124517340 -24999697 - PB1D7 SINE Alu 0 120 6 4 1534 238 283 10 115 chr6 124517251 124517355 -24999682 - B4 SINE B4 -119 173 81 4 1534 346 191 14 14 chr6 124518083 124518152 -24998885 + PB1D10 SINE Alu 12 80 -37 4 1534 260 160 59 20 chr6 124518112 124518163 -24998874 + 4.5SRNA scRNA scRNA 39 91 -3 4 1534 606 140 184 0 chr6 124518189 124518303 -24998734 + B1_Mus1 SINE Alu 7 141 -7 4 1534 198 71 0 0 chr6 124518305 124518333 -24998704 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 4 1535 495 0 0 0 chr6 124518457 124518512 -24998525 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1535 431 244 39 0 chr6 124518516 124518643 -24998394 + B3 SINE B2 85 216 0 5 1535 30 27 0 0 chr6 124518797 124518834 -24998203 + AT_rich Low_complexity Low_complexity 1 37 0 5 1535 181 284 21 74 chr6 124518937 124519032 -24998005 - L4 LINE RTE -517 1512 1423 5 1535 348 24 0 0 chr6 124519105 124519146 -24997891 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1535 888 151 6 11 chr6 124520549 124520730 -24996307 + GA-rich Low_complexity Low_complexity 1 180 0 5 1535 642 236 14 27 chr6 124522600 124522748 -24994289 + RSINE1 SINE B4 1 146 -19 5 1535 233 233 10 19 chr6 124522979 124523058 -24993979 + B1F SINE Alu 43 148 -1 5 1535 2412 176 68 6 chr6 124523496 124523992 -24993045 - RLTR11A2 LTR ERVK 0 527 1 5 1535 945 27 0 0 chr6 124525748 124525860 -24991177 + (CTTTG)n Simple_repeat Simple_repeat 2 113 0 5 1535 826 138 0 70 chr6 124525876 124526032 -24991005 + B1_Mur4 SINE Alu 1 145 -5 6 1535 309 206 0 0 chr6 124526032 124526124 -24990913 + GA-rich Low_complexity Low_complexity 2 93 0 6 1535 364 256 0 43 chr6 124526158 124526172 -24990865 - ID_B1 SINE B4 -34 190 101 6 1535 373 225 25 0 chr6 124526172 124526252 -24990785 - PB1D10 SINE Alu -16 101 20 6 1535 471 221 77 49 chr6 124526294 124526437 -24990600 + B1F1 SINE Alu 1 147 -2 6 1535 217 119 0 48 chr6 124527660 124527722 -24989315 + A-rich Low_complexity Low_complexity 1 59 0 6 1535 984 122 0 13 chr6 124527834 124527983 -24989054 - B1_Mus2 SINE Alu 0 147 1 6 1535 220 312 27 0 chr6 124528012 124528124 -24988913 + (CCA)n Simple_repeat Simple_repeat 1 115 0 6 1535 348 277 32 77 chr6 124528126 124528353 -24988684 + HAL1-2a_MD LINE L1 2345 2524 -500 6 1535 195 42 0 0 chr6 124528413 124528437 -24988600 + (CCA)n Simple_repeat Simple_repeat 3 26 0 6 1535 260 242 0 70 chr6 124528564 124528635 -24988402 - ID4_ SINE ID -14 69 4 7 1535 712 86 0 33 chr6 124528673 124528793 -24988244 + (TCTCCC)n Simple_repeat Simple_repeat 5 120 0 7 1535 318 330 66 0 chr6 124528794 124528885 -24988152 - ID_B1 SINE B4 -41 183 87 7 1535 522 0 0 0 chr6 124528986 124529044 -24987993 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 7 1535 336 286 14 0 chr6 124529181 124529287 -24987750 + PB1D10 SINE Alu 2 111 -38 7 1535 322 328 24 32 chr6 124529182 124529308 -24987729 + ID_B1 SINE B4 84 208 -16 7 1535 474 18 0 0 chr6 124530035 124530090 -24986947 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1535 234 367 0 0 chr6 124530090 124530199 -24986838 + G-rich Low_complexity Low_complexity 1 109 0 7 1535 815 131 39 0 chr6 124531344 124531474 -24985563 + B1_Mus1 SINE Alu 6 140 -8 7 1535 559 49 37 0 chr6 124531478 124531560 -24985477 + (GGGAGA)n Simple_repeat Simple_repeat 3 87 0 7 1535 290 250 22 60 chr6 124531560 124531652 -24985385 + B3A SINE B2 28 116 -82 8 1535 3690 281 129 44 chr6 124531951 124532629 -24984408 - MMVL30-int LTR ERV1 -1937 3126 2079 8 1535 2831 71 0 0 chr6 124532629 124532993 -24984044 - L1Md_T LINE L1 0 6582 6219 8 1535 3690 153 52 45 chr6 124532993 124533558 -24983479 - MMVL30-int LTR ERV1 -1620 2078 1496 8 1535 452 200 91 8 chr6 124534132 124534253 -24982784 - L1M LINE L1 -782 5397 5267 8 1535 360 264 90 8 chr6 124534290 124534412 -24982625 + ID_B1 SINE B4 93 224 0 8 1535 361 161 9 114 chr6 124535668 124535773 -24981264 - MMVL30-int LTR ERV1 -2257 1042 949 8 1535 279 189 0 0 chr6 124536162 124536215 -24980822 - MMVL30-int LTR ERV1 -2871 827 775 8 1535 249 57 0 0 chr6 124536547 124536582 -24980455 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 8 1535 3848 171 32 15 chr6 124537268 124537988 -24979049 - MMVL30-int LTR ERV1 -93 3605 2874 8 1535 3784 206 83 37 chr6 124538517 124539687 -24977350 - MMVL30-int LTR ERV1 -1468 2230 1501 8 1535 369 102 0 0 chr6 124539743 124539802 -24977235 + (T)n Simple_repeat Simple_repeat 1 59 0 8 1535 1101 102 0 0 chr6 124539802 124539949 -24977088 - B1_Mus2 SINE Alu 0 147 1 8 1535 230 73 0 24 chr6 124540231 124540273 -24976764 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 9 1535 1203 48 7 0 chr6 124540275 124540421 -24976616 - B1_Mm SINE Alu 0 147 1 9 1535 476 202 33 0 chr6 124540684 124540803 -24976234 - L1M LINE L1 -784 5399 5271 9 1535 397 269 76 0 chr6 124540841 124540960 -24976077 + ID_B1 SINE B4 93 220 -4 9 1535 411 140 9 114 chr6 124542209 124542314 -24974723 - RLTR1B-int LTR ERV1 -2257 1042 949 9 1535 297 115 39 0 chr6 124542716 124542768 -24974269 - RLTR1B-int LTR ERV1 -2871 827 774 9 1535 2079 155 68 16 chr6 124543153 124543533 -24973504 - RLTR9D LTR ERVK -3 400 1 9 1535 396 93 38 62 chr6 124543534 124543614 -24973423 - ETnERV2-int LTR ERVK -2 7404 7327 9 1535 879 249 15 5 chr6 124543821 124544023 -24973014 - ETnERV2-int LTR ERVK -981 6425 6222 9 1535 13392 138 10 5 chr6 124544058 124546024 -24971013 - ETnERV2-int LTR ERVK -1163 6243 4268 9 1535 8623 21 3 5 chr6 124546024 124547115 -24969922 - L1Md_T LINE L1 0 6582 5495 9 1535 9484 18 0 0 chr6 124547112 124548186 -24968851 + L1Md_T LINE L1 4387 5460 -423 9 1535 4331 271 55 41 chr6 124548186 124549503 -24967534 - ETnERV2-int LTR ERVK -3137 4269 2164 9 1535 3041 34 0 25 chr6 124549503 124549866 -24967171 + IAPEY2_LTR LTR ERVK 1 354 -3 9 1535 5673 264 48 28 chr6 124549866 124552051 -24964986 - ETnERV2-int LTR ERVK -4004 2163 4 9 1535 1882 162 101 6 chr6 124552053 124552418 -24964619 - RLTR9D LTR ERVK -3 400 1 9 1535 466 127 0 0 chr6 124552956 124553027 -24964010 + RLTR33 LTR ERVK 608 678 0 9 1535 294 278 40 20 chr6 124553028 124553127 -24963910 - PB1 SINE Alu -22 105 5 9 1535 720 257 28 33 chr6 124553178 124553391 -24963646 - B3 SINE B2 -3 213 2 1 1535 394 281 26 9 chr6 124553512 124553627 -24963410 + ID_B1 SINE B4 96 212 -12 1 1535 379 276 48 8 chr6 124553518 124553642 -24963395 + B1F2 SINE Alu 21 149 0 1 1535 1105 199 29 0 chr6 124553676 124553882 -24963155 + B3 SINE B2 5 216 0 1 1535 21 57 0 0 chr6 124553890 124553925 -24963112 + AT_rich Low_complexity Low_complexity 1 35 0 1 1535 180 111 0 0 chr6 124553973 124554000 -24963037 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1535 624 48 0 0 chr6 124554001 124554085 -24962952 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1535 507 17 0 0 chr6 124554206 124554266 -24962771 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1535 427 227 9 26 chr6 124554276 124554389 -24962648 - PB1D10 SINE Alu -3 114 4 1 1535 376 233 44 0 chr6 124554524 124554614 -24962423 + ID_B1 SINE B4 129 222 -2 1 1535 955 186 79 15 chr6 124554758 124554960 -24962077 - B3 SINE B2 0 216 2 1 1535 333 62 0 0 chr6 124554973 124555021 -24962016 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1 1535 378 42 0 0 chr6 124555022 124555070 -24961967 + (ATG)n Simple_repeat Simple_repeat 3 50 0 1 1535 346 256 20 95 chr6 124555093 124555240 -24961797 - B1F SINE Alu 0 149 14 1 1535 392 239 46 0 chr6 124555454 124555563 -24961474 - BC1_Mm scRNA scRNA -36 116 3 1 1535 664 248 14 0 chr6 124555615 124555756 -24961281 - RSINE1 SINE B4 -14 151 9 1 1535 24 0 0 0 chr6 124555762 124555786 -24961251 + AT_rich Low_complexity Low_complexity 1 24 0 1 1535 832 185 20 7 chr6 124555789 124555936 -24961101 - B1_Mur1 SINE Alu 0 149 1 1 1535 345 93 0 0 chr6 124555952 124556006 -24961031 + (TAG)n Simple_repeat Simple_repeat 1 54 0 1 1535 259 237 63 102 chr6 124556012 124556139 -24960898 - RSINE1 SINE B4 0 165 44 1 1535 717 241 74 6 chr6 124556241 124556416 -24960621 + ID_B1 SINE B4 12 198 -26 1 1535 1901 117 80 0 chr6 124556473 124556772 -24960265 + IAPEY2_LTR LTR ERVK 35 357 0 1 1535 25990 85 9 7 chr6 124556772 124560187 -24956850 + IAPEY3-int LTR ERVK 1 3423 -4257 1 1535 2877 50 9 0 chr6 124560187 124560529 -24956508 - IAPLTR4 LTR ERVK 0 345 1 1 1535 6642 248 50 38 chr6 124560529 124562923 -24954114 - IAPLTR3-int LTR ERVK -351 7329 5176 1 1535 854 81 35 49 chr6 124563180 124563323 -24953714 - IAPLTR3-int LTR ERVK -2911 4670 4530 1 1535 439 179 18 36 chr6 124563349 124563459 -24953578 - MMETn-int LTR ERVK -2380 2464 2357 1 1535 2098 132 107 3 chr6 124563464 124564053 -24952984 - IAPLTR3-int LTR ERVK -3135 4271 3567 1 1535 612 238 372 29 chr6 124564079 124564302 -24952735 - IAPLTR3-int LTR ERVK -4653 2753 2454 1 1535 21921 21 0 0 chr6 124564394 124566918 -24950119 + L1Md_T LINE L1 3063 5586 -297 1 1535 8616 32 0 0 chr6 124566918 124567914 -24949123 + L1Md_T LINE L1 5587 6582 0 1 1535 321 118 39 0 chr6 124567923 124567974 -24949063 - IAPLTR3-int LTR ERVK -5633 1773 1721 1 1535 1545 197 104 37 chr6 124567976 124568455 -24948582 - IAPLTR3-int LTR ERVK -4750 656 251 1 1535 522 169 20 80 chr6 124568566 124568798 -24948239 - IAPLTR3-int LTR ERVK -5867 954 801 1 1535 574 183 17 34 chr6 124568798 124568917 -24948120 - IAPLTR3-int LTR ERVK -6704 117 1 1 1535 2818 67 3 0 chr6 124568917 124569261 -24947776 - IAPLTR4 LTR ERVK 0 345 1 1 1535 30675 101 12 3 chr6 124569261 124573486 -24943551 + IAPEY3-int LTR ERVK 3418 7680 0 1 1535 1838 128 84 0 chr6 124573494 124573792 -24943245 + IAPEY2_LTR LTR ERVK 35 357 0 1 1535 413 239 25 42 chr6 124573826 124573944 -24943093 + URR1B DNA MER1_type 110 225 0 1 1535 230 147 85 40 chr6 124574110 124574176 -24942861 + PB1D9 SINE Alu 65 140 -9 1 1535 326 22 43 0 chr6 124574254 124574300 -24942737 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 1 1535 946 111 7 0 chr6 124574301 124574436 -24942601 - B1_Mus1 SINE Alu -12 136 1 1 1535 393 241 48 12 chr6 124576421 124576505 -24940532 - PB1D10 SINE Alu -17 100 14 1 1535 348 287 130 8 chr6 124576974 124577097 -24939940 + ID_B1 SINE B4 82 219 -5 1 1535 259 276 92 0 chr6 124577147 124577223 -24939814 - PB1D10 SINE Alu -31 86 4 1 1535 216 318 48 0 chr6 124577176 124577239 -24939798 - B4 SINE B4 -157 135 70 1 1535 879 102 7 28 chr6 124577853 124577994 -24939043 - B1_Mus2 SINE Alu -9 138 1 1 1535 3580 18 2 0 chr6 124578926 124579321 -24937716 - MTA_Mm LTR MaLR 0 396 1 1 1535 442 269 93 0 chr6 124579370 124579478 -24937559 - B1F SINE Alu -8 141 24 1 1535 653 309 44 36 chr6 124579551 124579776 -24937261 - B4A SINE B4 -23 269 43 1 1535 596 50 12 0 chr6 124580263 124580343 -24936694 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1535 307 287 10 41 chr6 124580359 124580378 -24936659 + ID_B1 SINE B4 70 164 -60 1 1535 347 269 13 13 chr6 124580378 124580457 -24936580 + PB1D10 SINE Alu 5 83 -34 1 1535 357 215 0 0 chr6 124580497 124580562 -24936475 + ID4 SINE ID 2 66 -17 1 1535 552 100 0 0 chr6 124580589 124580669 -24936368 + (GGGA)n Simple_repeat Simple_repeat 2 81 0 1 1535 414 266 0 44 chr6 124580696 124580810 -24936227 + PB1D10 SINE Alu 3 111 -6 1 1535 205 272 62 0 chr6 124580817 124580898 -24936139 + (CAGAGA)n Simple_repeat Simple_repeat 5 90 0 1 1535 250 173 19 0 chr6 124580832 124580884 -24936153 + GA-rich Low_complexity Low_complexity 2 54 0 1 1535 248 376 54 82 chr6 124581552 124581920 -24935117 + ORR1E LTR MaLR 1 358 -1 1 1535 412 266 26 0 chr6 124582338 124582451 -24934586 + PB1D10 SINE Alu 1 116 -1 1 1535 190 125 35 18 chr6 124582454 124582511 -24934526 + (CAGA)n Simple_repeat Simple_repeat 2 59 0 1 1535 224 222 14 0 chr6 124582513 124582585 -24934452 + GA-rich Low_complexity Low_complexity 1 73 0 1 1535 779 306 88 61 chr6 124582588 124583079 -24933958 + Lx8 LINE L1 6967 7470 -3 1 1535 792 234 68 24 chr6 124583086 124583292 -24933745 + B3 SINE B2 2 216 0 1 1535 21 0 0 0 chr6 124583294 124583315 -24933722 + AT_rich Low_complexity Low_complexity 1 21 0 1 1535 624 314 14 9 chr6 124583325 124583540 -24933497 - B3 SINE B2 0 216 1 1 1535 554 221 10 0 chr6 124583684 124583788 -24933249 + PB1D10 SINE Alu 13 117 0 1 1535 426 235 82 0 chr6 124584091 124584189 -24932848 - PB1D10 SINE Alu -6 111 6 1 1535 774 178 0 20 chr6 124584214 124584359 -24932678 - B1_Mur3 SINE Alu -5 144 5 1 1535 326 327 77 39 chr6 124584365 124584521 -24932516 - RSINE1 SINE B4 -1 164 3 1 1535 423 256 1 10 chr6 124584541 124584644 -24932393 - PB1D10 SINE Alu -13 104 2 1 1535 270 264 28 0 chr6 124585331 124585403 -24931634 - B4A SINE B4 -217 75 2 1 1535 188 122 24 0 chr6 124585802 124585843 -24931194 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 1535 333 209 116 0 chr6 124585898 124585984 -24931053 + PB1D9 SINE Alu 17 112 -8 1 1535 353 266 43 52 chr6 124587458 124587573 -24929464 + RSINE1 SINE B4 8 121 -44 1 1535 356 274 160 0 chr6 124587704 124587810 -24929227 + B1F SINE Alu 2 124 -25 1 1535 451 301 0 17 chr6 124587831 124587946 -24929091 + ID_B1 SINE B4 94 206 -18 1 1535 1018 184 22 72 chr6 124588041 124588134 -24928903 + B3 SINE B2 6 93 -123 1 1535 1415 84 5 25 chr6 124588134 124588330 -24928707 - B2_Mm1t SINE B2 0 193 2 1 1535 1018 184 22 72 chr6 124588330 124588458 -24928579 + B3 SINE B2 94 216 0 1 1535 294 164 0 0 chr6 124588495 124588550 -24928487 + CT-rich Low_complexity Low_complexity 3 57 0 1 1535 575 167 118 22 chr6 124588552 124588687 -24928350 - B1_Mur1 SINE Alu -1 148 1 1 1535 581 296 69 15 chr6 124588811 124589013 -24928024 + B3 SINE B2 3 215 -1 1 1535 348 252 32 73 chr6 124589021 124589045 -24927992 + MT2B LTR ERVL 145 163 -438 1 1535 533 233 78 0 chr6 124589045 124589161 -24927876 + B1_Mur1 SINE Alu 1 125 -24 1 1535 861 162 0 0 chr6 124589165 124589319 -24927718 + (TGGA)n Simple_repeat Simple_repeat 3 156 0 1 1535 267 31 0 0 chr6 124589319 124589351 -24927686 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 1 1535 875 155 7 7 chr6 124589368 124589511 -24927526 + B1_Mur4 SINE Alu 5 147 -3 1 1535 654 13 0 0 chr6 124589516 124589591 -24927446 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 1535 200 97 32 0 chr6 124590573 124590604 -24926433 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1535 548 216 0 26 chr6 124590604 124590718 -24926319 - PB1D9 SINE Alu -1 119 9 1 1535 234 0 0 0 chr6 124590754 124590780 -24926257 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1 1535 288 208 5 25 chr6 124590785 124590883 -24926154 - B1_Mus1 SINE Alu -25 122 25 1 1535 680 241 52 66 chr6 124591141 124591354 -24925683 - B3 SINE B2 -4 212 3 1 1535 463 269 7 58 chr6 124591528 124591666 -24925371 - ID_B1 SINE B4 0 224 94 1 1535 886 160 180 36 chr6 124592054 124592248 -24924789 - URR1A DNA MER1_type 0 226 5 1 1535 294 194 13 40 chr6 124592405 124592480 -24924557 + MTEb LTR MaLR 279 351 -28 1 1535 268 317 0 12 chr6 124592774 124592857 -24924180 + ID4_ SINE ID 2 83 0 1 1535 219 188 130 0 chr6 124592921 124592990 -24924047 - ID4_ SINE ID -4 79 2 1 1535 680 256 8 0 chr6 124593028 124593161 -24923876 + RSINE1 SINE B4 3 136 -29 1 1535 197 83 28 0 chr6 124593176 124593212 -24923825 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1535 24 32 0 0 chr6 124593212 124593243 -24923794 + AT_rich Low_complexity Low_complexity 1 31 0 1 1535 645 261 54 27 chr6 124593258 124593443 -24923594 - B3A SINE B2 -5 193 4 1 1535 327 212 68 39 chr6 124593523 124593626 -24923411 - PB1D10 SINE Alu -1 116 11 1 1535 220 208 122 56 chr6 124593761 124593868 -24923169 + PB1D9 SINE Alu 1 114 -6 1 1535 23 0 0 0 chr6 124594058 124594081 -24922956 + AT_rich Low_complexity Low_complexity 1 23 0 1 1535 1165 93 18 30 chr6 124594158 124594325 -24922712 + B2_Mm2 SINE B2 2 166 -29 1 1535 429 261 45 9 chr6 124594372 124594484 -24922553 - PB1D7 SINE Alu -3 117 2 1 1535 299 134 50 20 chr6 124594490 124594589 -24922448 + (GTTTG)n Simple_repeat Simple_repeat 3 104 0 1 1535 244 115 0 62 chr6 124594581 124594646 -24922391 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 1 1535 924 170 7 0 chr6 124594646 124594793 -24922244 - B1_Mur3 SINE Alu -1 148 1 1 1535 292 182 0 18 chr6 124594796 124594852 -24922185 - PB1D10 SINE Alu -1 116 62 2 1535 270 95 0 0 chr6 124594854 124594896 -24922141 + (TTG)n Simple_repeat Simple_repeat 3 44 0 2 1535 212 349 0 15 chr6 124594897 124594964 -24922073 - ID4_ SINE ID -13 70 5 2 1535 316 331 31 31 chr6 124595020 124595148 -24921889 - RSINE1 SINE B4 -27 138 11 2 1535 287 327 97 0 chr6 124595177 124595290 -24921747 - PB1 SINE Alu -3 124 1 2 1535 224 263 0 50 chr6 124595293 124595353 -24921684 + G-rich Low_complexity Low_complexity 4 60 0 2 1535 464 264 110 16 chr6 124595368 124595495 -24921542 - RSINE1 SINE B4 -26 139 1 2 1535 395 324 39 45 chr6 124595519 124595697 -24921340 + MLT1G LTR MaLR 39 215 -376 2 1535 635 156 78 49 chr6 124595993 124596135 -24920902 - B1_Mus1 SINE Alu -1 147 2 2 1535 498 33 0 0 chr6 124596155 124596215 -24920822 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1535 533 259 0 0 chr6 124596216 124596328 -24920709 - RSINE1 SINE B4 -51 114 3 2 1535 315 0 0 0 chr6 124597072 124597107 -24919930 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1535 351 0 0 0 chr6 124597107 124597145 -24919892 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1535 255 31 0 0 chr6 124597249 124597281 -24919756 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 2 1535 382 338 38 19 chr6 124597301 124597461 -24919576 - HAL1-2a_MD LINE L1 -517 2507 2345 2 1535 1042 213 8 77 chr6 124597507 124597634 -24919403 - B4A SINE B4 -73 219 106 2 1535 887 163 14 0 chr6 124597634 124597781 -24919256 + B1_Mur3 SINE Alu 1 149 0 2 1535 1042 213 8 77 chr6 124597781 124597887 -24919150 - B4A SINE B4 -187 105 2 2 1535 942 106 0 0 chr6 124598081 124598222 -24918815 + (TTCC)n Simple_repeat Simple_repeat 3 143 0 2 1535 332 300 229 0 chr6 124598225 124598395 -24918642 - ID_B1 SINE B4 -15 209 1 2 1535 811 75 17 0 chr6 124598508 124598628 -24918409 + (TTTC)n Simple_repeat Simple_repeat 2 123 0 2 1535 625 217 0 83 chr6 124598628 124598773 -24918264 - B1_Mur1 SINE Alu -12 137 3 2 1535 2689 27 36 12 chr6 124598853 124599189 -24917848 - RLTR10C LTR ERVK -92 344 1 2 1535 492 305 53 11 chr6 124599344 124599533 -24917504 + ERVL-B4-int LTR ERVL 747 943 -4771 2 1535 2452 169 15 8 chr6 124599959 124600384 -24916653 - MTC LTR MaLR -7 414 6 2 1535 331 182 0 0 chr6 124600386 124600441 -24916596 + ORR1E LTR MaLR 301 355 -4 2 1535 286 234 116 11 chr6 124600452 124600547 -24916490 - MTE2a LTR MaLR -274 105 1 2 1535 489 175 181 19 chr6 124600658 124600763 -24916274 + ID_B1 SINE B4 95 216 -8 2 1535 857 211 65 0 chr6 124600776 124600975 -24916062 + B3 SINE B2 5 216 0 2 1535 654 160 111 8 chr6 124601010 124601136 -24915901 + B1_Mur3 SINE Alu 11 149 0 2 1535 189 0 0 0 chr6 124601178 124601199 -24915838 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 1535 243 0 0 0 chr6 124601199 124601225 -24915812 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1535 742 225 52 158 chr6 124601225 124601553 -24915484 + RMER5 LTR ERV1 6 298 -236 2 1535 2032 141 0 9 chr6 124601554 124601876 -24915161 + ORR1A2 LTR MaLR 1 319 -8 2 1535 856 242 33 21 chr6 124601874 124602114 -24914923 + RMER5 LTR ERV1 288 530 -4 2 1535 297 0 0 0 chr6 124602432 124602465 -24914572 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1535 1548 42 5 16 chr6 124602654 124602846 -24914191 + B2_Mm1t SINE B2 2 191 -2 2 1535 591 102 0 0 chr6 124603014 124603102 -24913935 + (GGAA)n Simple_repeat Simple_repeat 3 90 0 2 1535 620 224 12 43 chr6 124603118 124603281 -24913756 + L1_Mur1 LINE L1 4462 4619 -1267 2 1535 1097 155 20 10 chr6 124603281 124603497 -24913540 + RLTR13D3 LTR ERVK 823 1003 -111 2 1535 1215 314 70 34 chr6 124603502 124604112 -24912925 + L1_Mur3 LINE L1 4659 5290 -590 2 1535 267 336 102 17 chr6 124604188 124604306 -24912731 + B3A SINE B2 67 194 -4 2 1535 1225 214 151 91 chr6 124604386 124604771 -24912266 + MTD LTR MaLR 4 411 -8 2 1535 685 250 13 33 chr6 124605043 124605196 -24911841 + RSINE1 SINE B4 16 165 0 2 1535 659 162 0 48 chr6 124605304 124605492 -24911545 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1535 411 248 35 60 chr6 124605517 124605633 -24911404 + PB1D7 SINE Alu 1 113 -7 2 1535 508 237 17 26 chr6 124605658 124605775 -24911262 + ID_B1 SINE B4 106 221 -3 2 1535 250 360 58 22 chr6 124605929 124606068 -24910969 - MLT1J1 LTR MaLR -233 211 68 2 1535 304 319 9 76 chr6 124606242 124606304 -24910733 + MLT1A0 LTR MaLR 19 77 -288 2 1535 813 249 29 29 chr6 124606304 124606511 -24910526 + ID_B1 SINE B4 1 207 -17 2 1535 304 319 9 76 chr6 124606511 124606553 -24910484 + MLT1A0 LTR MaLR 78 116 -249 2 1535 361 288 88 0 chr6 124606556 124606636 -24910401 + ID_B1 SINE B4 8 94 -130 2 1535 346 198 10 19 chr6 124606641 124606744 -24910293 + CT-rich Low_complexity Low_complexity 6 107 0 2 1535 213 39 0 0 chr6 124606762 124606788 -24910249 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 2 1535 243 241 0 0 chr6 124606816 124606874 -24910163 - PB1D7 SINE Alu -17 103 46 2 1535 1263 101 34 0 chr6 124607012 124607190 -24909847 - B2_Mm2 SINE B2 -10 185 2 2 1535 619 250 38 32 chr6 124607210 124607396 -24909641 - B3A SINE B2 0 198 12 2 1535 623 162 0 35 chr6 124607382 124607497 -24909540 - B1_Mus1 SINE Alu -31 117 7 2 1535 26 30 0 0 chr6 124607534 124607567 -24909470 + AT_rich Low_complexity Low_complexity 1 33 0 2 1535 609 284 6 57 chr6 124607578 124607735 -24909302 - B1F SINE Alu 0 149 1 2 1535 323 349 43 80 chr6 124607597 124607759 -24909278 - B4 SINE B4 -76 216 61 2 1535 399 21 0 0 chr6 124607853 124607901 -24909136 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1535 627 259 137 26 chr6 124607940 124608130 -24908907 + Lx6 LINE L1 7181 7391 -69 2 1535 189 0 0 0 chr6 124608149 124608170 -24908867 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1535 621 171 8 33 chr6 124608179 124608244 -24908793 + B1_Mur4 SINE Alu 2 67 -83 2 1535 450 0 0 0 chr6 124608244 124608294 -24908743 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1535 621 171 8 33 chr6 124608294 124608349 -24908688 + B1_Mur4 SINE Alu 68 119 -31 2 1535 294 95 0 0 chr6 124608349 124608391 -24908646 + (GGA)n Simple_repeat Simple_repeat 2 43 0 2 1535 1317 52 57 6 chr6 124608434 124608609 -24908428 - B2_Mm2 SINE B2 -8 187 4 2 1535 908 195 88 16 chr6 124608766 124608959 -24908078 - B3 SINE B2 -8 208 2 2 1535 234 0 0 0 chr6 124609633 124609659 -24907378 + (TGG)n Simple_repeat Simple_repeat 3 28 0 2 1535 1276 41 0 0 chr6 124609710 124609857 -24907180 - B1_Mm SINE Alu 0 147 1 2 1535 482 141 267 20 chr6 124609973 124610074 -24906963 - B1_Mus1 SINE Alu -21 127 2 2 1535 538 150 116 150 chr6 124610093 124610266 -24906771 - MTD LTR MaLR 0 419 253 2 1535 722 153 8 16 chr6 124610305 124610431 -24906606 + B1_Mur1 SINE Alu 16 140 -9 2 1535 373 231 63 37 chr6 124610525 124610632 -24906405 + B1F SINE Alu 5 118 -31 2 1535 545 180 0 0 chr6 124610630 124610719 -24906318 - B1_Mur3 SINE Alu -60 89 1 2 1535 215 132 0 26 chr6 124610740 124610779 -24906258 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1535 447 323 15 29 chr6 124610780 124610917 -24906120 - RSINE1 SINE B4 0 165 31 2 1535 1278 34 0 0 chr6 124610993 124611140 -24905897 + B1_Mus1 SINE Alu 2 148 0 2 1535 186 43 0 0 chr6 124611140 124611163 -24905874 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1535 988 142 183 5 chr6 124611273 124611464 -24905573 + URR1B DNA MER1_type 1 225 0 2 1535 541 286 0 8 chr6 124611564 124611698 -24905339 + B3A SINE B2 4 136 -62 2 1535 38 39 0 0 chr6 124611724 124611776 -24905261 + AT_rich Low_complexity Low_complexity 1 52 0 2 1535 494 295 93 0 chr6 124611778 124611907 -24905130 + RSINE1 SINE B4 3 143 -22 2 1535 255 232 82 149 chr6 124611907 124611986 -24905051 + B2_Mm2 SINE B2 2 195 0 2 1535 283 250 65 13 chr6 124611999 124612076 -24904961 + ID4_ SINE ID 3 83 0 2 1535 202 0 91 0 chr6 124612753 124612786 -24904251 + (CCCCCG)n Simple_repeat Simple_repeat 3 38 0 2 1535 29 0 0 0 chr6 124612946 124612975 -24904062 + GC_rich Low_complexity Low_complexity 1 29 0 2 1535 25 0 0 0 chr6 124614092 124614117 -24902920 + AT_rich Low_complexity Low_complexity 1 25 0 2 1535 275 250 97 29 chr6 124614500 124614603 -24902434 + PB1D9 SINE Alu 5 114 -6 2 1535 933 126 4 5 chr6 124614614 124614753 -24902284 + B2_Mm2 SINE B2 2 133 -60 2 1535 423 0 0 0 chr6 124614753 124614800 -24902237 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 2 1535 896 146 57 73 chr6 124614800 124614852 -24902185 + B2_Mm1a SINE B2 134 190 -3 2 1535 306 87 0 0 chr6 124615684 124615730 -24901307 + (TCC)n Simple_repeat Simple_repeat 1 46 0 2 1535 328 262 16 0 chr6 124615730 124615824 -24901213 - ID4_ SINE ID -53 99 4 2 1535 380 266 61 17 chr6 124615957 124616072 -24900965 + ID_B1 SINE B4 105 224 0 2 1535 703 241 78 0 chr6 124616087 124616253 -24900784 + B3A SINE B2 2 180 -18 2 1535 195 42 0 0 chr6 124616266 124616290 -24900747 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 1535 1174 56 0 0 chr6 124616291 124616435 -24900602 - B1_Mus1 SINE Alu 0 148 5 2 1535 728 177 35 0 chr6 124616503 124616644 -24900393 + B1_Mur4 SINE Alu 5 150 0 2 1535 743 209 8 0 chr6 124617033 124617167 -24899870 - B1_Mur4 SINE Alu -15 135 1 2 1535 498 17 0 0 chr6 124617467 124617526 -24899511 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1535 617 38 12 0 chr6 124618053 124618133 -24898904 + (TC)n Simple_repeat Simple_repeat 1 81 0 2 1535 288 0 0 0 chr6 124618133 124618164 -24898873 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1535 290 203 237 0 chr6 124618699 124618758 -24898279 + PB1D10 SINE Alu 12 84 -33 3 1535 210 303 0 183 chr6 124618768 124618861 -24898176 + ID2 SINE ID 2 77 -6 3 1535 361 214 143 0 chr6 124619083 124619181 -24897856 + ID_B1 SINE B4 84 195 -29 3 1535 320 239 24 49 chr6 124619246 124619369 -24897668 - PB1D7 SINE Alu 0 120 1 3 1535 204 160 0 0 chr6 124619818 124619852 -24897185 + A-rich Low_complexity Low_complexity 1 34 0 3 1535 842 110 17 0 chr6 124619852 124619970 -24897067 + PB1D9 SINE Alu 1 120 0 3 1535 204 160 0 0 chr6 124619970 124619985 -24897052 + A-rich Low_complexity Low_complexity 35 49 0 3 1535 319 203 29 0 chr6 124620325 124620394 -24896643 - ID_B1 SINE B4 -57 167 97 3 1535 243 274 55 0 chr6 124620453 124620526 -24896511 - B1F SINE Alu -34 115 39 3 1535 211 320 0 26 chr6 124620615 124620692 -24896345 - PB1D10 SINE Alu -42 75 1 3 1535 312 212 91 0 chr6 124620708 124620807 -24896230 - PB1D10 SINE Alu -9 108 1 3 1535 222 37 0 0 chr6 124621194 124621221 -24895816 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 3 1535 406 258 123 16 chr6 124621221 124621343 -24895694 - B1F SINE Alu -6 143 9 3 1535 246 111 40 27 chr6 124621491 124621565 -24895472 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 3 1535 515 202 136 8 chr6 124621677 124621802 -24895235 - B1F SINE Alu -3 146 6 3 1535 572 186 17 34 chr6 124622160 124622277 -24894760 - PB1D9 SINE Alu -4 116 2 3 1535 749 225 69 23 chr6 124622573 124622746 -24894291 - B3A SINE B2 -16 182 2 3 1535 643 227 33 66 chr6 124622778 124622929 -24894108 - B1_Mus2 SINE Alu -1 146 1 3 1535 248 281 84 12 chr6 124623009 124623092 -24893945 + B4A SINE B4 81 169 -123 3 1535 446 179 126 0 chr6 124623022 124623096 -24893941 + PB1D9 SINE Alu 14 88 -32 3 1535 429 20 0 0 chr6 124623096 124623146 -24893891 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1535 446 179 126 0 chr6 124623146 124623166 -24893871 + PB1D9 SINE Alu 89 118 -2 3 1535 587 208 133 0 chr6 124623197 124623317 -24893720 + B1_Mur2 SINE Alu 2 137 -12 3 1535 459 0 0 0 chr6 124623317 124623368 -24893669 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1535 592 143 141 16 chr6 124623456 124623584 -24893453 + B1F1 SINE Alu 5 148 -1 3 1535 734 236 0 7 chr6 124624082 124624227 -24892810 - B1F SINE Alu -5 144 1 3 1535 1335 118 283 88 chr6 124624259 124624566 -24892471 + ORR1B2 LTR MaLR 1 367 0 3 1535 238 233 81 14 chr6 124624640 124624714 -24892323 - ID2 SINE ID -3 80 2 3 1535 243 352 65 8 chr6 124624721 124624844 -24892193 - B1F SINE Alu 0 149 20 3 1535 284 278 11 0 chr6 124625279 124625369 -24891668 + L1M4 LINE L1 5154 5244 -902 3 1535 189 74 0 0 chr6 124625621 124625648 -24891389 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1535 1098 237 84 51 chr6 124625682 124626037 -24891000 + Lx6 LINE L1 7008 7374 -86 3 1535 314 250 52 83 chr6 124626106 124626202 -24890835 + PB1 SINE Alu 4 96 -51 3 1535 369 241 43 35 chr6 124626216 124626332 -24890705 + PB1D7 SINE Alu 4 120 0 3 1535 438 210 120 0 chr6 124626372 124626472 -24890565 + ID_B1 SINE B4 105 216 -8 3 1535 588 162 143 23 chr6 124626497 124626630 -24890407 + B1_Mur3 SINE Alu 1 149 0 3 1535 658 226 15 0 chr6 124626637 124626770 -24890267 + B3 SINE B2 34 168 -48 3 1535 460 209 17 52 chr6 124627182 124627298 -24889739 - PB1D10 SINE Alu -1 116 5 3 1535 220 219 31 0 chr6 124627338 124627402 -24889635 - RSINE1 SINE B4 -28 137 72 3 1535 30 69 0 0 chr6 124627445 124627503 -24889534 + AT_rich Low_complexity Low_complexity 1 58 0 3 1535 698 245 13 0 chr6 124627532 124627691 -24889346 - RSINE1 SINE B4 -2 163 3 3 1535 811 246 37 56 chr6 124627710 124627743 -24889294 - B3 SINE B2 -4 212 184 3 1535 906 144 199 17 chr6 124627743 124627919 -24889118 - B3 SINE B2 -7 209 2 3 1535 929 210 6 34 chr6 124627919 124628100 -24888937 - B3A SINE B2 -33 183 2 3 1535 637 260 122 5 chr6 124628167 124628364 -24888673 - ID_B1 SINE B4 -2 222 3 3 1535 323 233 31 82 chr6 124628375 124628473 -24888564 - PB1D10 SINE Alu -27 93 1 3 1535 842 161 22 0 chr6 124628506 124628643 -24888394 - B1_Mur4 SINE Alu -5 145 6 3 1535 356 285 19 83 chr6 124628643 124628661 -24888376 - B4A SINE B4 -68 222 78 3 1535 354 307 19 16 chr6 124629070 124629236 -24887801 + B3A SINE B2 21 187 -8 3 1535 228 230 76 63 chr6 124629905 124629916 -24887121 + B4A SINE B4 82 93 -199 3 1535 258 239 14 43 chr6 124629916 124629960 -24887077 + B1_Mur3 SINE Alu 3 44 -105 3 1535 726 223 29 0 chr6 124629960 124630099 -24886938 + B3A SINE B2 1 143 -55 3 1535 558 79 0 0 chr6 124630113 124630189 -24886848 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 1535 244 51 0 0 chr6 124630240 124630279 -24886758 + L1Md_T LINE L1 6544 6582 0 3 1535 587 186 0 10 chr6 124630283 124630386 -24886651 + B1_Mur3 SINE Alu 41 142 -7 3 1535 189 0 0 0 chr6 124630438 124630459 -24886578 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 3 1535 219 353 23 23 chr6 124630476 124630563 -24886474 + B1F1 SINE Alu 4 90 -59 3 1535 459 208 55 23 chr6 124630700 124630828 -24886209 - Tigger7 DNA MER2_type -85 2406 2275 3 1535 548 222 25 33 chr6 124630916 124631037 -24886000 + B1F1 SINE Alu 1 120 -29 3 1535 625 308 112 60 chr6 124631073 124631175 -24885862 - Tigger7 DNA MER2_type -2088 403 296 3 1535 1452 57 0 6 chr6 124631175 124631352 -24885685 + B2_Mm2 SINE B2 2 177 -18 3 1535 625 308 112 60 chr6 124631352 124631598 -24885439 - Tigger7 DNA MER2_type -2196 295 37 3 1535 528 230 30 38 chr6 124631643 124631774 -24885263 - RSINE1 SINE B4 -25 140 11 3 1535 230 342 124 19 chr6 124631931 124632092 -24884945 - Tigger14a DNA MER2_type -92 232 55 3 1535 1204 62 0 0 chr6 124632268 124632414 -24884623 + B1_Mm SINE Alu 2 147 0 3 1535 210 71 0 0 chr6 124632414 124632442 -24884595 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1535 240 257 212 35 chr6 124632677 124632790 -24884247 - ID_B1 SINE B4 -13 211 79 3 1535 445 224 43 43 chr6 124632868 124633008 -24884029 + B1F SINE Alu 3 142 -7 3 1535 372 249 98 15 chr6 124633383 124633485 -24883552 - PB1 SINE Alu -40 109 11 3 1535 354 272 113 20 chr6 124633708 124633858 -24883179 + MIR3 SINE MIR 37 200 -8 3 1535 1010 109 0 0 chr6 124634407 124634544 -24882493 + B1_Mus2 SINE Alu 1 137 -10 3 1535 239 196 0 3 chr6 124634625 124634675 -24882362 + B1F SINE Alu 56 104 -16 3 1535 441 0 0 0 chr6 124634682 124634731 -24882306 + (TAAAA)n Simple_repeat Simple_repeat 1 49 0 3 1535 285 142 7 0 chr6 124634774 124634820 -24882217 + B1_Mur1 SINE Alu 95 142 -5 3 1535 392 158 13 0 chr6 124634820 124634896 -24882141 + GA-rich Low_complexity Low_complexity 1 77 0 3 1535 577 266 0 16 chr6 124634897 124635023 -24882014 + ID_B1 SINE B4 80 203 -21 3 1535 558 0 0 0 chr6 124635025 124635087 -24881950 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 3 1535 245 292 130 17 chr6 124635218 124635333 -24881704 - LTR88a LTR Gypsy -522 294 167 3 1535 379 214 17 134 chr6 124635502 124635621 -24881416 + MT2B LTR ERVL 154 258 -343 3 1535 644 198 32 16 chr6 124635517 124635640 -24881397 + B1_Mus1 SINE Alu 1 125 -22 3 1535 185 94 31 0 chr6 124635853 124635885 -24881152 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 3 1535 419 219 240 16 chr6 124636492 124636613 -24880424 + B1_Mur2 SINE Alu 2 149 0 3 1535 1323 53 12 6 chr6 124636616 124636787 -24880250 + B2_Mm2 SINE B2 1 172 -23 3 1535 915 122 82 11 chr6 124636790 124636972 -24880065 + B2_Mm2 SINE B2 1 195 0 3 1535 215 152 22 0 chr6 124637127 124637173 -24879864 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1535 301 292 160 0 chr6 124637312 124637418 -24879619 + B1F1 SINE Alu 17 139 -10 3 1535 280 273 56 68 chr6 124637523 124637684 -24879353 + RSINE1 SINE B4 3 161 -4 3 1535 1078 208 15 19 chr6 124637832 124638038 -24878999 - B3 SINE B2 -10 206 2 3 1535 279 0 0 0 chr6 124638800 124638831 -24878206 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 3 1535 221 309 61 75 chr6 124638831 124638978 -24878059 - L2a LINE L2 -169 3257 3113 3 1535 478 323 172 60 chr6 124638994 124639499 -24877538 - L2a LINE L2 -339 3080 2518 3 1535 742 140 44 0 chr6 124639499 124639613 -24877424 + PB1D9 SINE Alu 2 120 0 3 1535 478 323 172 60 chr6 124639613 124639821 -24877216 - L2a LINE L2 -902 2517 2287 3 1535 1202 55 14 0 chr6 124639950 124640095 -24876942 + B1_Mm SINE Alu 1 147 0 3 1535 313 266 27 17 chr6 124640163 124640275 -24876762 + PB1D7 SINE Alu 11 120 0 3 1535 322 286 122 38 chr6 124640290 124640421 -24876616 + RSINE1 SINE B4 5 146 -19 3 1535 303 238 33 3 chr6 124640465 124640537 -24876500 + ID4_ SINE ID 15 87 -65 3 1535 252 318 107 18 chr6 124640470 124640561 -24876476 + ID_B1 SINE B4 23 123 -101 3 1535 606 230 108 0 chr6 124640561 124640709 -24876328 + RSINE1 SINE B4 2 165 0 3 1535 373 133 80 0 chr6 124640723 124640798 -24876239 - MTC LTR MaLR 0 421 341 3 1535 585 102 314 0 chr6 124640799 124640917 -24876120 - MTC LTR MaLR -266 155 1 3 1535 981 62 0 0 chr6 124640918 124641047 -24875990 + (TATG)n Simple_repeat Simple_repeat 3 131 0 3 1535 276 327 69 0 chr6 124641067 124641168 -24875869 + PB1 SINE Alu 13 120 -7 3 1535 455 247 56 68 chr6 124641205 124641366 -24875671 + RSINE1 SINE B4 5 163 -2 3 1535 809 93 33 17 chr6 124641394 124641514 -24875523 - B1_Mus1 SINE Alu 0 148 27 3 1535 341 154 134 62 chr6 124641430 124641527 -24875510 - MT2B LTR ERVL -337 264 161 3 1535 325 103 327 18 chr6 124641661 124641771 -24875266 - B2_Mm2 SINE B2 -5 190 47 3 1535 1393 62 23 0 chr6 124641783 124641959 -24875078 - B2_Mm2 SINE B2 -13 182 3 3 1535 728 263 55 41 chr6 124641971 124642261 -24874776 - RLTR15 LTR ERVK -65 294 1 4 1535 617 193 0 58 chr6 124642408 124642529 -24874508 - PB1D9 SINE Alu -6 114 1 4 1535 725 42 21 0 chr6 124642695 124642791 -24874246 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 4 1535 956 210 45 10 chr6 124642792 124642994 -24874043 + B3 SINE B2 2 210 -6 4 1535 224 167 71 0 chr6 124643313 124643355 -24873682 + ID4 SINE ID 28 72 -11 4 1535 426 314 45 17 chr6 124644740 124644918 -24872119 + Tigger15a DNA TcMar 259 441 -274 4 1535 230 324 111 0 chr6 124645015 124645123 -24871914 + B1F SINE Alu 30 149 0 4 1535 1561 59 0 0 chr6 124645240 124645427 -24871610 - B2_Mm1t SINE B2 -6 187 1 4 1535 339 312 36 27 chr6 124645474 124645576 -24871461 + RSINE1 SINE B4 45 149 -16 4 1535 276 30 0 0 chr6 124645576 124645609 -24871428 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1535 673 226 30 24 chr6 124645656 124645824 -24871213 - ID_B1 SINE B4 -1 223 55 4 1535 247 83 0 0 chr6 124645824 124645860 -24871177 + B1F SINE Alu 89 124 -23 4 1535 945 150 7 7 chr6 124645871 124646019 -24871018 + B1_Mur2 SINE Alu 1 148 -1 4 1535 257 324 0 26 chr6 124646089 124646165 -24870872 + PB1 SINE Alu 50 123 -4 4 1535 281 338 0 0 chr6 124646180 124646257 -24870780 + ID4_ SINE ID 2 78 -5 4 1535 759 129 109 36 chr6 124646308 124646445 -24870592 + B1_Mur4 SINE Alu 3 149 -1 4 1535 388 309 107 7 chr6 124646557 124646697 -24870340 - RSINE1 SINE B4 -8 157 4 4 1535 363 302 44 44 chr6 124646703 124646838 -24870199 - Charlie20a DNA Charlie -351 456 322 4 1535 308 173 0 0 chr6 124647270 124647322 -24869715 - ID SINE ID -171 53 2 4 1535 480 276 31 0 chr6 124647330 124647457 -24869580 - B1F SINE Alu -7 142 12 4 1535 911 122 69 28 chr6 124647543 124647687 -24869350 + B1_Mur4 SINE Alu 1 150 0 4 1535 271 250 146 73 chr6 124647806 124647943 -24869094 + RSINE1 SINE B4 4 153 -12 4 1535 198 0 0 0 chr6 124647943 124647965 -24869072 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 1535 271 250 146 73 chr6 124647965 124647978 -24869059 + RSINE1 SINE B4 154 165 0 4 1535 267 31 0 0 chr6 124647979 124648011 -24869026 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1535 555 296 58 11 chr6 124648383 124648571 -24868466 + B3A SINE B2 1 197 -1 4 1535 251 206 16 16 chr6 124648626 124648690 -24868347 + L1MA5A LINE L1 6234 6297 0 4 1535 592 180 189 0 chr6 124648700 124648811 -24868226 + B1_Mur1 SINE Alu 6 137 -12 4 1535 221 83 0 27 chr6 124648811 124648848 -24868189 + (TAA)n Simple_repeat Simple_repeat 2 37 0 4 1535 299 311 144 0 chr6 124648860 124648992 -24868045 + RSINE1 SINE B4 2 152 -13 4 1535 339 184 54 125 chr6 124648998 124649110 -24867927 - PB1D10 SINE Alu -1 116 13 4 1535 269 270 92 92 chr6 124649018 124649115 -24867922 - ID_B1 SINE B4 -51 173 34 4 1535 271 176 0 19 chr6 124649115 124649167 -24867870 - ID4_ SINE ID -12 71 21 4 1535 269 270 92 92 chr6 124649167 124649181 -24867856 - ID SINE ID -51 33 11 4 1536 295 330 10 39 chr6 124649733 124649837 -24867200 - B1_Mus2 SINE Alu -46 101 1 4 1536 233 182 162 29 chr6 124656212 124656280 -24860757 + ID4_ SINE ID 4 80 -3 4 1536 590 279 54 0 chr6 124656475 124656622 -24860415 + RSINE1 SINE B4 11 165 0 4 1536 350 305 51 44 chr6 124656636 124656773 -24860264 + RSINE1 SINE B4 1 138 -27 4 1536 1207 114 45 0 chr6 124656817 124656993 -24860044 - B2_Mm2 SINE B2 -10 185 2 4 1536 234 0 0 0 chr6 124657032 124657058 -24859979 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1536 1082 66 15 0 chr6 124657058 124657194 -24859843 - B1_Mus1 SINE Alu -10 138 1 4 1536 471 288 97 34 chr6 124657295 124657471 -24859566 + B3A SINE B2 1 187 -11 4 1536 1102 156 71 15 chr6 124657490 124657686 -24859351 - B3 SINE B2 -9 207 1 4 1536 471 191 51 68 chr6 124657717 124657835 -24859202 + B3A SINE B2 1 116 -82 4 1536 571 261 23 0 chr6 124658029 124658159 -24858878 - B3 SINE B2 -9 207 75 4 1536 366 231 0 0 chr6 124658475 124658592 -24858445 + (TG)n Simple_repeat Simple_repeat 2 118 0 4 1536 557 220 42 245 chr6 124658600 124658955 -24858082 - B4A SINE B4 -8 284 2 4 1536 360 220 120 5 chr6 124658990 124659086 -24857951 + B1_Mur3 SINE Alu 46 149 0 4 1536 267 291 149 37 chr6 124659117 124659224 -24857813 + PB1D7 SINE Alu 1 119 -1 4 1536 519 201 38 147 chr6 124659251 124659408 -24857629 - RMER19B LTR ERVK -760 142 3 4 1536 284 232 14 28 chr6 124659421 124659492 -24857545 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 4 1536 693 268 66 0 chr6 124659495 124659693 -24857344 - B3 SINE B2 -4 212 2 4 1536 565 189 45 9 chr6 124660008 124660120 -24856917 + PB1D9 SINE Alu 3 118 -2 4 1536 779 145 186 72 chr6 124660136 124660329 -24856708 + B3 SINE B2 2 216 0 4 1536 204 222 0 0 chr6 124660463 124660499 -24856538 + polypurine Low_complexity Low_complexity 2 37 0 4 1536 1238 80 51 6 chr6 124660504 124660680 -24856357 + B2_Mm2 SINE B2 7 190 -5 4 1536 304 268 90 30 chr6 124660904 124661004 -24856033 + PB1D10 SINE Alu 3 108 -9 4 1536 216 0 0 0 chr6 124661023 124661047 -24855990 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1536 198 71 0 0 chr6 124661047 124661075 -24855962 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 4 1536 198 200 0 0 chr6 124661148 124661161 -24855876 + polypurine Low_complexity Low_complexity 2 14 0 4 1536 1178 41 14 7 chr6 124661161 124661307 -24855730 + B1_Mm SINE Alu 1 147 0 4 1536 198 200 0 0 chr6 124661307 124661338 -24855699 + polypurine Low_complexity Low_complexity 15 45 0 4 1536 225 282 184 23 chr6 124661339 124661426 -24855611 + B2_Mm2 SINE B2 1 101 -94 4 1536 226 214 42 28 chr6 124663624 124663696 -24853341 + RLTR5_Mm LTR ERV1 514 586 -42 4 1536 25 0 0 0 chr6 124663754 124663779 -24853258 + AT_rich Low_complexity Low_complexity 1 25 0 4 1536 780 231 79 26 chr6 124664274 124664512 -24852525 + ID_B1 SINE B4 1 261 -31 4 1536 432 0 0 0 chr6 124669686 124669734 -24847303 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1536 215 233 178 0 chr6 124670179 124670252 -24846785 + MIR SINE MIR 76 161 -115 4 1536 291 222 0 129 chr6 124670256 124670349 -24846688 + ID4 SINE ID 3 83 0 4 1536 241 208 0 0 chr6 124670493 124670541 -24846496 + ID4 SINE ID 25 72 -11 4 1536 210 71 0 0 chr6 124672184 124672212 -24844825 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1536 1231 61 0 0 chr6 124672406 124672553 -24844484 + B1_Mus1 SINE Alu 2 148 0 4 1536 563 135 138 43 chr6 124672689 124672805 -24844232 + B1_Mus1 SINE Alu 9 135 -13 4 1536 1387 12 23 0 chr6 124672809 124672980 -24844057 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 4 1536 488 209 109 29 chr6 124673032 124673170 -24843867 + B4A SINE B4 82 230 -62 4 1536 635 154 18 3 chr6 124673170 124673297 -24843740 + B1_Mur1 SINE Alu 1 127 -20 4 1536 337 156 31 15 chr6 124673338 124673403 -24843634 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 4 1536 189 0 0 0 chr6 124673405 124673426 -24843611 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 4 1536 186 192 0 0 chr6 124673988 124674040 -24842997 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1536 604 66 86 94 chr6 124674068 124674185 -24842852 + B1_Mur4 SINE Alu 22 137 -13 4 1536 258 333 69 0 chr6 124674254 124674341 -24842696 - B4A SINE B4 -146 146 54 4 1536 249 154 0 0 chr6 124674344 124674383 -24842654 - MIRc SINE MIR -152 116 78 4 1536 842 255 14 19 chr6 124674719 124674931 -24842106 - B3 SINE B2 -5 211 1 4 1536 224 364 6 24 chr6 124675493 124675662 -24841375 + (CATG)n Simple_repeat Simple_repeat 1 166 0 4 1536 276 30 0 0 chr6 124675681 124675714 -24841323 + (CATA)n Simple_repeat Simple_repeat 3 35 0 4 1536 306 376 0 6 chr6 124675762 124675933 -24841104 + (CATG)n Simple_repeat Simple_repeat 1 170 0 4 1536 207 330 0 30 chr6 124675944 124676044 -24840993 + (CATG)n Simple_repeat Simple_repeat 1 97 0 4 1536 672 299 44 18 chr6 124676052 124676325 -24840712 - B4A SINE B4 -11 281 2 4 1536 1671 5 32 0 chr6 124676764 124676950 -24840087 + B2_Mm1a SINE B2 2 193 0 4 1536 726 167 13 6 chr6 124676971 124677128 -24839909 + (TG)n Simple_repeat Simple_repeat 1 158 0 4 1536 722 252 6 36 chr6 124677159 124677324 -24839713 - RSINE1 SINE B4 -4 161 2 4 1536 557 220 33 22 chr6 124679283 124679427 -24837610 + B1F SINE Alu 4 148 0 4 1536 661 213 58 7 chr6 124679428 124679565 -24837472 + B1F2 SINE Alu 1 144 -5 4 1536 288 200 0 0 chr6 124679587 124679652 -24837385 + GA-rich Low_complexity Low_complexity 3 67 0 4 1536 199 119 14 69 chr6 124680867 124680939 -24836098 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 4 1536 798 179 0 14 chr6 124680971 124681118 -24835919 - B1_Mur4 SINE Alu 0 150 6 4 1536 828 237 56 23 chr6 124681125 124681341 -24835696 - ID_B1 SINE B4 0 224 2 4 1536 245 266 16 0 chr6 124681432 124681496 -24835541 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 4 1536 433 307 85 17 chr6 124683459 124683692 -24833345 - MIR SINE MIR -14 254 8 4 1536 288 0 0 0 chr6 124684168 124684200 -24832837 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1536 917 164 7 27 chr6 124684229 124684379 -24832658 + B1_Mur2 SINE Alu 1 147 -2 4 1536 232 284 15 0 chr6 124684508 124684575 -24832462 - B4 SINE B4 -218 74 7 4 1536 459 206 178 23 chr6 124684587 124684716 -24832321 - B1F SINE Alu 0 149 1 4 1536 582 288 0 0 chr6 124684973 124685105 -24831932 + B1F1 SINE Alu 2 133 -16 4 1536 192 40 0 0 chr6 124685113 124685138 -24831899 + (G)n Simple_repeat Simple_repeat 1 25 0 5 1536 1923 69 0 16 chr6 124685389 124685639 -24831398 + L1_Mus2 LINE L1 6320 6565 -1 5 1536 290 250 21 83 chr6 124686380 124686411 -24830626 + B4A SINE B4 54 114 -178 5 1536 336 154 0 0 chr6 124686411 124686463 -24830574 + B1F SINE Alu 1 52 -97 5 1536 290 250 21 83 chr6 124686463 124686476 -24830561 + B4A SINE B4 115 143 -149 5 1536 516 295 207 5 chr6 124686638 124686846 -24830191 + MER2 DNA MER2_type 96 345 0 5 1536 667 158 0 34 chr6 124686847 124686965 -24830072 - B1_Mus1 SINE Alu -21 127 14 5 1536 431 277 8 23 chr6 124686859 124686992 -24830045 - ID_B1 SINE B4 -26 198 68 5 1536 328 195 12 49 chr6 124687012 124687093 -24829944 - PB1D10 SINE Alu 0 117 40 5 1536 314 314 65 54 chr6 124687148 124687316 -24829721 - MIRb SINE MIR -85 183 14 5 1536 188 116 186 0 chr6 124687811 124687854 -24829183 + L2b LINE L2 3105 3155 -220 5 1536 410 243 45 103 chr6 124689617 124689773 -24827264 + B4 SINE B4 77 223 -69 5 1536 915 84 8 0 chr6 124689643 124689774 -24827263 + B1_Mur4 SINE Alu 18 149 -1 5 1536 252 0 0 0 chr6 124689881 124689909 -24827128 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 5 1536 319 267 148 0 chr6 124690022 124690123 -24826914 + PB1 SINE Alu 1 116 -11 5 1536 842 133 33 53 chr6 124690212 124690363 -24826674 - B1_Mus1 SINE Alu 0 148 1 5 1536 436 113 16 0 chr6 124691242 124691304 -24825733 - U7 snRNA snRNA 0 63 1 5 1536 295 216 233 22 chr6 124691712 124691802 -24825235 + PB1D10 SINE Alu 3 111 -6 5 1536 989 114 126 6 chr6 124692246 124692413 -24824624 + B2_Mm2 SINE B2 3 189 -6 5 1536 25 0 0 0 chr6 124692634 124692659 -24824378 + AT_rich Low_complexity Low_complexity 1 25 0 5 1536 186 143 0 0 chr6 124698298 124698333 -24818704 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1536 992 68 68 0 chr6 124698344 124698476 -24818561 - B1_Mus2 SINE Alu -6 141 1 5 1536 889 182 189 22 chr6 124698492 124698677 -24818360 - B3 SINE B2 0 216 1 5 1536 1128 90 0 0 chr6 124698702 124698847 -24818190 + B1_Mus2 SINE Alu 1 145 -2 5 1536 1197 75 7 0 chr6 124698925 124699072 -24817965 - B1_Mus1 SINE Alu 0 148 1 5 1536 463 259 0 26 chr6 124700183 124700298 -24816739 + PB1D10 SINE Alu 6 117 0 5 1536 217 328 137 66 chr6 124700370 124700582 -24816455 - MIRb SINE MIR -26 242 16 5 1536 350 254 74 33 chr6 124700801 124700923 -24816114 + MER2B DNA MER2_type 32 158 -178 5 1536 1103 49 13 40 chr6 124700923 124701073 -24815964 + B1_Mus2 SINE Alu 2 147 0 5 1536 542 273 122 0 chr6 124701221 124701393 -24815644 + MER2 DNA MER2_type 152 344 -1 5 1536 807 219 27 0 chr6 124701476 124701622 -24815415 - RSINE1 SINE B4 -13 152 3 5 1536 592 159 56 9 chr6 124701629 124701737 -24815300 - PB1D9 SINE Alu -6 114 2 5 1536 1478 43 48 11 chr6 124701752 124701939 -24815098 - B2_Mm2 SINE B2 0 195 2 5 1536 895 250 39 0 chr6 124702260 124702468 -24814569 - B3 SINE B2 0 216 1 5 1536 413 191 132 0 chr6 124702484 124702595 -24814442 - B1_Mur1 SINE Alu -21 128 5 5 1536 401 283 121 14 chr6 124703230 124703370 -24813667 + ID_B1 SINE B4 56 210 -14 5 1536 540 236 140 0 chr6 124704028 124704185 -24812852 + ID_B1 SINE B4 46 224 0 5 1536 400 281 74 0 chr6 124704191 124704312 -24812725 + RSINE1 SINE B4 36 165 0 5 1536 217 221 14 42 chr6 124704551 124704622 -24812415 - MIRm SINE MIR -126 150 82 5 1536 349 212 24 48 chr6 124704930 124705014 -24812023 - ID4 SINE ID 0 83 2 5 1536 231 210 31 31 chr6 124706220 124706284 -24810753 + G-rich Low_complexity Low_complexity 2 65 0 5 1536 180 0 0 0 chr6 124706428 124706448 -24810589 + (CGG)n Simple_repeat Simple_repeat 3 22 0 5 1536 272 266 14 21 chr6 124706515 124706657 -24810380 + C-rich Low_complexity Low_complexity 3 143 0 5 1536 341 337 0 18 chr6 124706758 124706924 -24810113 + G-rich Low_complexity Low_complexity 3 165 0 5 1536 1029 142 7 0 chr6 124710063 124710211 -24806826 + B1_Mur3 SINE Alu 1 149 0 5 1536 447 68 0 0 chr6 124710761 124710820 -24806217 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 5 1536 358 242 183 0 chr6 124711818 124711938 -24805099 - B1_Mur2 SINE Alu -5 144 3 5 1536 650 206 95 7 chr6 124711942 124712079 -24804958 - B1_Mur2 SINE Alu 0 149 1 5 1536 573 248 95 90 chr6 124712079 124712163 -24804874 - ID_B1 SINE B4 0 223 2 5 1536 29 0 0 0 chr6 124712183 124712212 -24804825 + AT_rich Low_complexity Low_complexity 1 29 0 5 1536 537 243 96 51 chr6 124712227 124712383 -24804654 - RSINE1 SINE B4 0 165 3 5 1536 849 189 0 26 chr6 124712397 124712549 -24804488 - B1_Mur3 SINE Alu 0 149 2 5 1536 361 257 0 0 chr6 124714158 124714232 -24802805 - ID4_ SINE ID -9 74 1 5 1536 517 248 14 35 chr6 124714234 124714376 -24802661 - ID_B1 SINE B4 0 224 86 5 1536 471 18 0 0 chr6 124714383 124714439 -24802598 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1536 332 256 100 0 chr6 124714446 124714536 -24802501 - B3 SINE B2 -34 182 84 5 1536 484 192 18 46 chr6 124714753 124714862 -24802175 - B1_Mur1 SINE Alu -2 147 42 5 1536 281 190 69 0 chr6 124714820 124714878 -24802159 - MT2B LTR ERVL -361 240 179 5 1536 182 105 26 0 chr6 124714956 124714994 -24802043 + (TTA)n Simple_repeat Simple_repeat 1 39 0 5 1536 1330 87 27 0 chr6 124714995 124715178 -24801859 - B2_Mm1t SINE B2 -5 188 1 5 1536 213 39 0 0 chr6 124715179 124715205 -24801832 + (TAA)n Simple_repeat Simple_repeat 1 26 0 5 1536 423 0 0 0 chr6 124715205 124715252 -24801785 + (TTA)n Simple_repeat Simple_repeat 3 49 0 5 1536 335 211 88 11 chr6 124715253 124715344 -24801693 - PB1D7 SINE Alu 0 120 23 5 1536 239 152 0 0 chr6 124715460 124715506 -24801531 - tRNA-Ala-GCA tRNA tRNA -28 47 2 5 1536 186 43 0 0 chr6 124715524 124715547 -24801490 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1536 999 102 7 0 chr6 124715547 124715684 -24801353 - B1_Mus1 SINE Alu -10 138 1 5 1536 449 91 195 0 chr6 124717321 124717398 -24799639 + BC1_Mm scRNA scRNA 1 92 -60 5 1536 255 189 0 0 chr6 124719475 124719528 -24797509 + (CGG)n Simple_repeat Simple_repeat 1 53 0 5 1536 1169 62 7 0 chr6 124721117 124721262 -24795775 + B1_Mus1 SINE Alu 2 147 -1 5 1536 257 328 0 0 chr6 124721637 124721704 -24795333 + ID4_ SINE ID 16 82 -1 5 1536 606 99 0 0 chr6 124721759 124721850 -24795187 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 1536 690 179 0 0 chr6 124721867 124721973 -24795064 - PB1D7 SINE Alu -14 106 1 5 1536 473 273 19 89 chr6 124721992 124722149 -24794888 - B1F2 SINE Alu -1 148 3 5 1536 364 147 0 26 chr6 124722169 124722246 -24794791 + T-rich Low_complexity Low_complexity 4 78 0 5 1536 1085 79 43 0 chr6 124722246 124722386 -24794651 - B1_Mus2 SINE Alu 0 147 2 5 1536 2695 68 84 3 chr6 124722393 124722763 -24794274 - L1_Mus3 LINE L1 -1 6637 6238 5 1536 621 125 34 78 chr6 124722769 124722884 -24794153 - B1_Mus2 SINE Alu -1 146 39 5 1536 245 202 0 146 chr6 124722789 124722899 -24794138 - RLTR25B LTR ERVK -508 520 427 5 1536 266 146 16 71 chr6 124722899 124723083 -24793954 + CT-rich Low_complexity Low_complexity 2 175 0 5 1536 358 189 61 0 chr6 124723122 124723286 -24793751 + (CCTG)n Simple_repeat Simple_repeat 2 175 0 5 1536 270 257 0 0 chr6 124723290 124723360 -24793677 + CT-rich Low_complexity Low_complexity 2 71 0 5 1536 237 108 58 103 chr6 124723365 124723520 -24793517 + (TCTCTG)n Simple_repeat Simple_repeat 3 150 0 5 1536 317 167 37 0 chr6 124723537 124723591 -24793446 - B1_Mur4 SINE Alu -90 60 5 5 1536 233 170 36 36 chr6 124723559 124723614 -24793423 + MT2C_Mm LTR ERVL 199 253 -222 5 1536 262 300 139 10 chr6 124723785 124723886 -24793151 + PB1D10 SINE Alu 4 117 0 5 1536 837 190 0 0 chr6 124723903 124724045 -24792992 + B1_Mus1 SINE Alu 5 146 -2 5 1536 570 289 0 0 chr6 124724656 124724791 -24792246 + B1F SINE Alu 6 140 -9 5 1536 336 269 149 0 chr6 124724839 124724980 -24792057 + RSINE1 SINE B4 2 163 -2 5 1536 945 153 47 42 chr6 124725022 124725213 -24791824 + B2_Mm2 SINE B2 2 193 -2 5 1536 300 111 0 0 chr6 124725235 124725280 -24791757 + (CAA)n Simple_repeat Simple_repeat 2 46 0 5 1536 752 117 17 0 chr6 124725428 124725549 -24791488 + B1_Mus1 SINE Alu 7 135 -13 5 1536 486 0 0 0 chr6 124725550 124725604 -24791433 + (CAAAA)n Simple_repeat Simple_repeat 4 57 0 5 1536 261 0 0 0 chr6 124725604 124725633 -24791404 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1536 329 123 230 14 chr6 124725659 124725733 -24791304 + PB1D10 SINE Alu 27 116 -1 5 1536 400 191 119 0 chr6 124725883 124725967 -24791070 - PB1D7 SINE Alu -12 108 15 5 1536 229 327 70 43 chr6 124726476 124726591 -24790446 + B1F1 SINE Alu 24 141 -8 5 1536 513 225 15 52 chr6 124726606 124726742 -24790295 + B2_Mm2 SINE B2 1 131 -64 5 1536 284 163 0 0 chr6 124726722 124726771 -24790266 + ORR1B1 LTR MaLR 346 394 0 5 1536 583 71 0 12 chr6 124726771 124726856 -24790181 + ORR1B1-int LTR MaLR 1 84 -1425 5 1536 1735 134 98 9 chr6 124726853 124727170 -24789867 - ORR1B1 LTR MaLR -9 385 41 5 1536 249 228 17 63 chr6 124727173 124727293 -24789744 + B3 SINE B2 88 207 -9 5 1536 283 323 29 63 chr6 124727344 124727400 -24789637 + L2a LINE L2 3210 3264 -162 5 1536 367 198 228 16 chr6 124727400 124727523 -24789514 - B1F SINE Alu 0 149 1 6 1536 283 323 29 63 chr6 124727523 124727641 -24789396 + L2a LINE L2 3265 3377 -49 5 1536 536 237 96 23 chr6 124727658 124727835 -24789202 + B2_Mm2 SINE B2 1 190 -5 6 1536 235 204 0 0 chr6 124727856 124727905 -24789132 + CT-rich Low_complexity Low_complexity 2 50 0 6 1536 299 280 13 13 chr6 124728516 124728592 -24788445 - ID4 SINE ID 0 83 8 6 1536 385 224 40 0 chr6 124728634 124728710 -24788327 - ID4 SINE ID -2 81 3 6 1536 627 192 205 60 chr6 124730268 124730434 -24786603 + B3 SINE B2 3 192 -3 6 1536 434 231 54 27 chr6 124730556 124730667 -24786370 - PB1D10 SINE Alu -3 114 1 6 1536 643 199 112 47 chr6 124730757 124730926 -24786111 + B3A SINE B2 6 185 -13 6 1536 199 276 78 13 chr6 124731075 124731152 -24785885 + MIRb SINE MIR 22 103 -165 6 1536 273 280 46 74 chr6 124731184 124731292 -24785745 + PB1D10 SINE Alu 7 111 -6 6 1536 727 151 25 8 chr6 124731438 124731558 -24785479 - B1F SINE Alu -8 141 20 6 1536 454 270 10 0 chr6 124731620 124731720 -24785317 + B1F1 SINE Alu 12 112 -37 6 1536 3324 182 129 37 chr6 124731747 124731840 -24785197 + RMER21A LTR ERV1 1 129 -818 6 1536 531 0 0 0 chr6 124731840 124731899 -24785138 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 6 1536 3324 182 129 37 chr6 124731899 124732070 -24784967 + RMER21A LTR ERV1 130 323 -624 6 1536 501 17 0 0 chr6 124732070 124732128 -24784909 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1536 3324 182 129 37 chr6 124732128 124732164 -24784873 + RMER21A LTR ERV1 324 358 -589 6 1536 1528 58 16 0 chr6 124732164 124732354 -24784683 + B2_Mm1a SINE B2 1 193 0 6 1536 3324 182 129 37 chr6 124732354 124732860 -24784177 + RMER21A LTR ERV1 359 883 -64 6 1536 522 276 118 29 chr6 124732979 124733225 -24783812 + Lx9 LINE L1 7206 7473 -171 6 1536 387 0 0 0 chr6 124733229 124733272 -24783765 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1536 28 29 0 0 chr6 124733325 124733360 -24783677 + AT_rich Low_complexity Low_complexity 1 35 0 6 1536 5654 98 186 7 chr6 124733437 124734313 -24782724 + RLTR13D4 LTR ERVK 1 1033 0 6 1536 1296 80 14 117 chr6 124734313 124734526 -24782511 + B2_Mm2 SINE B2 4 194 -1 6 1536 895 124 48 0 chr6 124734579 124734724 -24782313 + URR1A DNA MER1_type 54 205 -21 6 1536 1136 43 0 14 chr6 124734720 124734862 -24782175 + B1_Mm SINE Alu 7 146 -1 6 1536 390 42 0 0 chr6 124734862 124734910 -24782127 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1536 657 272 24 24 chr6 124734941 124735107 -24781930 + B3 SINE B2 45 210 -6 6 1536 1060 256 57 30 chr6 124735125 124735387 -24781650 + B4A SINE B4 2 270 -22 6 1536 486 0 0 0 chr6 124735404 124735458 -24781579 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1536 1611 21 27 0 chr6 124735492 124735680 -24781357 + B2_Mm1t SINE B2 1 193 0 6 1536 253 125 0 0 chr6 124736103 124736143 -24780894 + PB1D10 SINE Alu 76 115 -2 6 1536 207 224 169 13 chr6 124736325 124736402 -24780635 - L2c LINE L2 -75 3312 3224 6 1536 1336 97 16 0 chr6 124736403 124736589 -24780448 + B2_Mm2 SINE B2 1 189 -6 6 1536 261 261 14 14 chr6 124736681 124736751 -24780286 - ID4_ SINE ID -11 72 3 6 1536 181 315 0 0 chr6 124736937 124736991 -24780046 - L2c LINE L2 -517 2902 2849 6 1536 304 278 14 0 chr6 124737108 124737180 -24779857 + B1F SINE Alu 13 85 -64 6 1536 1406 135 134 8 chr6 124737189 124737443 -24779594 + ORR1A4 LTR MaLR 1 286 -43 6 1536 984 173 20 20 chr6 124737541 124737736 -24779301 - B2_Mm2 SINE B2 0 195 1 6 1536 847 255 29 0 chr6 124737865 124738069 -24778968 + B3 SINE B2 1 210 -6 6 1536 378 0 0 0 chr6 124738139 124738181 -24778856 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 6 1536 1200 76 0 0 chr6 124738182 124738339 -24778698 - B2_Mm2 SINE B2 -37 158 2 6 1536 499 266 18 0 chr6 124738373 124738486 -24778551 - RSINE1 SINE B4 -48 117 3 6 1536 1277 48 0 0 chr6 124738548 124738695 -24778342 - B1_Mus2 SINE Alu 0 147 1 6 1536 564 182 10 0 chr6 124738762 124738861 -24778176 - B1_Mur2 SINE Alu -26 123 24 6 1536 26 0 0 0 chr6 124738873 124738899 -24778138 + AT_rich Low_complexity Low_complexity 1 26 0 6 1536 1033 158 41 0 chr6 124738906 124739077 -24777960 + B2_Mm2 SINE B2 2 179 -16 6 1536 1430 46 17 0 chr6 124739077 124739250 -24777787 - B2_Mm2 SINE B2 -19 176 1 6 1536 597 172 0 0 chr6 124739282 124739404 -24777633 + (TG)n Simple_repeat Simple_repeat 2 123 0 6 1536 510 303 0 61 chr6 124739407 124739572 -24777465 - RSINE1 SINE B4 0 165 11 6 1536 474 288 130 54 chr6 124739641 124739880 -24777157 - MLT1F LTR MaLR -151 397 141 6 1536 977 212 28 5 chr6 124739884 124740102 -24776935 + ID_B1 SINE B4 2 224 0 6 1536 288 197 66 61 chr6 124740284 124740379 -24776658 + RLTR20B3 LTR ERVK 99 195 -365 6 1536 257 263 85 66 chr6 124740623 124740729 -24776308 + PB1D10 SINE Alu 10 117 0 6 1536 387 275 0 0 chr6 124740756 124740836 -24776201 + B1_Mur1 SINE Alu 68 147 -2 6 1536 180 135 0 0 chr6 124740839 124740876 -24776161 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 6 1536 297 68 0 0 chr6 124740895 124740939 -24776098 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1536 787 292 64 11 chr6 124741003 124741270 -24775767 + B4 SINE B4 3 283 -9 6 1536 237 265 20 0 chr6 124741335 124741384 -24775653 - MLT1F LTR MaLR -469 100 51 6 1536 1543 58 5 0 chr6 124741410 124741601 -24775436 + B2_Mm1a SINE B2 2 193 0 6 1536 1476 22 43 22 chr6 124741732 124741917 -24775120 - B2_Mm1t SINE B2 -3 190 2 6 1536 31 0 0 0 chr6 124742014 124742045 -24774992 + AT_rich Low_complexity Low_complexity 1 31 0 6 1536 770 104 0 0 chr6 124742053 124742159 -24774878 + B2_Mm2 SINE B2 2 107 -88 6 1536 980 102 17 221 chr6 124742231 124742431 -24774606 - B2_Mm1t SINE B2 -1 192 35 6 1536 1223 55 0 14 chr6 124742431 124742579 -24774458 - B1_Mus1 SINE Alu -1 147 2 6 1536 980 102 17 221 chr6 124742579 124742618 -24774419 - B2_Mm1t SINE B2 -159 34 2 6 1536 295 303 0 0 chr6 124742618 124742694 -24774343 - ID_B1 SINE B4 -67 157 82 6 1536 256 340 40 10 chr6 124742822 124742836 -24774201 - B1F1 SINE Alu -43 106 3 6 1536 280 301 0 46 chr6 124742836 124742923 -24774114 - ID_B1 SINE B4 -58 166 84 6 1536 962 241 15 15 chr6 124743084 124743290 -24773747 - B3 SINE B2 -10 206 1 6 1536 287 175 158 0 chr6 124743349 124743406 -24773631 - B1_Mur1 SINE Alu 0 149 84 6 1536 3474 225 62 95 chr6 124743688 124744767 -24772270 - MYSERV-int LTR ERVK 0 6550 5515 6 1536 1234 54 0 0 chr6 124744767 124744914 -24772123 - B1_Mus2 SINE Alu 0 147 1 6 1536 3474 225 62 95 chr6 124744914 124745186 -24771851 - MYSERV-int LTR ERVK -1036 5514 5243 6 1536 2918 177 58 33 chr6 124745187 124745464 -24771573 + RMER12B LTR ERVK 7 294 -1110 6 1536 1464 64 11 0 chr6 124745464 124745651 -24771386 - B2_Mm1t SINE B2 -4 189 1 6 1536 2918 177 58 33 chr6 124745651 124745975 -24771062 + RMER12B LTR ERVK 295 623 -781 6 1536 206 57 57 0 chr6 124746079 124746114 -24770923 + (TTTC)n Simple_repeat Simple_repeat 1 37 0 6 1536 602 231 27 0 chr6 124746114 124746250 -24770787 - B1_Mus1 SINE Alu -1 148 7 6 1536 698 88 0 12 chr6 124746329 124746438 -24770599 - RMER6A LTR ERVK -553 167 57 6 1536 2624 157 68 104 chr6 124746478 124747047 -24769990 + RMER15 LTR ERVL 1 549 -26 6 1536 2900 9 3 0 chr6 124747047 124747368 -24769669 - RLTRETN_Mm LTR ERVK 0 322 1 6 1536 39889 29 1 6 chr6 124747368 124752232 -24764805 - MMETn-int LTR ERVK 0 4844 1 6 1536 2900 9 3 0 chr6 124752232 124752553 -24764484 - RLTRETN_Mm LTR ERVK 0 322 1 6 1536 274 290 16 31 chr6 124752585 124752649 -24764388 - ID4_ SINE ID -13 70 8 6 1536 765 226 0 0 chr6 124752659 124752792 -24764245 - B1_Mur2 SINE Alu -16 133 1 6 1536 1668 36 0 0 chr6 124752904 124753096 -24763941 - B2_Mm1a SINE B2 -1 192 1 6 1536 835 214 12 12 chr6 124753168 124753338 -24763699 + B2_Mm2 SINE B2 1 170 -25 6 1536 243 0 0 0 chr6 124753349 124753376 -24763661 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1536 1117 199 5 10 chr6 124753381 124753579 -24763458 - B3 SINE B2 -19 197 1 6 1536 1232 34 0 20 chr6 124753607 124753756 -24763281 + B1_Mm SINE Alu 2 147 0 6 1536 1495 44 22 5 chr6 124753962 124754146 -24762891 + B2_Mm2 SINE B2 2 188 -7 6 1536 333 0 0 0 chr6 124754257 124754294 -24762743 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 6 1536 1249 56 0 24 chr6 124754294 124754459 -24762578 - B2_Mm2 SINE B2 -34 161 1 6 1536 270 0 0 0 chr6 124754846 124754876 -24762161 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1536 1222 49 0 0 chr6 124755017 124755160 -24761877 - B1_Mm SINE Alu -3 144 2 6 1536 303 144 297 11 chr6 124755319 124755410 -24761627 - PB1D10 SINE Alu 0 117 1 6 1536 798 291 22 11 chr6 124756003 124756278 -24760759 - Lx9 LINE L1 -171 7473 7196 6 1536 786 94 0 25 chr6 124756687 124756807 -24760230 + B1_Mus2 SINE Alu 31 147 0 6 1536 1025 141 4 137 chr6 124756879 124757007 -24760030 - MTC LTR MaLR -200 221 110 6 1536 1155 78 0 0 chr6 124757007 124757149 -24759888 + B1_Mus2 SINE Alu 1 142 -5 6 1536 1025 141 4 137 chr6 124757149 124757178 -24759859 - MTC LTR MaLR -312 109 91 6 1536 354 23 0 0 chr6 124757178 124757221 -24759816 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 6 1536 1025 141 4 137 chr6 124757221 124757237 -24759800 - MTC LTR MaLR -331 90 79 6 1536 1175 82 0 13 chr6 124757237 124757386 -24759651 - B1_Mus2 SINE Alu 0 147 1 6 1536 1025 141 4 137 chr6 124757386 124757465 -24759572 - MTC LTR MaLR -343 78 2 6 1536 562 233 15 15 chr6 124757487 124757618 -24759419 - B3 SINE B2 -85 131 1 6 1536 352 323 29 36 chr6 124757633 124757771 -24759266 + ID_B1 SINE B4 79 215 -9 6 1536 180 77 0 0 chr6 124757779 124757805 -24759232 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1536 656 203 8 0 chr6 124757817 124757935 -24759102 + B1_Mur1 SINE Alu 2 120 -29 6 1536 306 0 0 0 chr6 124757936 124757970 -24759067 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1536 387 0 0 0 chr6 124757970 124758012 -24759025 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1536 923 117 36 7 chr6 124758027 124758165 -24758872 - B1_Mus1 SINE Alu -5 143 2 6 1536 269 227 19 25 chr6 124758301 124758374 -24758663 + PB1 SINE Alu 15 83 -34 7 1536 369 0 0 0 chr6 124758524 124758565 -24758472 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1536 472 237 31 71 chr6 124762107 124762234 -24754803 - RSINE1 SINE B4 0 165 44 7 1536 202 325 0 0 chr6 124764224 124764307 -24752730 + C-rich Low_complexity Low_complexity 4 86 0 7 1536 604 234 58 7 chr6 124765849 124765987 -24751050 - B1_Mur2 SINE Alu -2 147 3 7 1536 723 119 83 76 chr6 124766001 124766146 -24750891 - B1_Mus2 SINE Alu 0 147 2 7 1536 390 42 0 0 chr6 124766373 124766421 -24750616 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1536 580 285 53 7 chr6 124766429 124766581 -24750456 - B3A SINE B2 -38 160 2 7 1536 433 311 22 29 chr6 124766592 124766728 -24750309 - ID_B1 SINE B4 -8 216 82 7 1536 310 279 106 0 chr6 124766784 124766888 -24750149 - MER58A DNA MER1_type -109 115 1 7 1536 180 0 0 0 chr6 124768411 124768431 -24748606 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 7 1536 181 250 0 24 chr6 124768825 124768866 -24748171 + MIR SINE MIR 34 73 -135 7 1536 900 152 27 14 chr6 124769077 124769224 -24747813 + B1_Mur1 SINE Alu 1 149 0 7 1536 274 215 15 15 chr6 124770813 124770879 -24746158 - ID2 SINE ID -16 67 2 7 1536 1333 35 118 0 chr6 124771559 124771729 -24745308 + B2_Mm2 SINE B2 1 190 -5 7 1536 801 176 8 0 chr6 124773147 124773278 -24743759 - B1_Mus1 SINE Alu -13 135 4 7 1536 431 231 186 57 chr6 124773825 124773949 -24743088 - ID_B1 SINE B4 -6 218 79 7 1536 411 268 42 2 chr6 124775220 124775327 -24741710 + PB1D9 SINE Alu 2 110 -39 7 1536 1955 152 68 118 chr6 124775478 124775601 -24741436 + MTC LTR MaLR 3 106 -315 7 1536 312 27 0 0 chr6 124775601 124775638 -24741399 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1536 1955 152 68 118 chr6 124775638 124775650 -24741387 + MTC LTR MaLR 107 107 -314 7 1536 392 182 0 26 chr6 124775650 124775763 -24741274 - Lx3A LINE L1 -4 6977 6868 7 1536 941 148 235 0 chr6 124775771 124775954 -24741083 + URR1A DNA MER1_type 1 226 0 7 1536 1955 152 68 118 chr6 124775954 124776247 -24740790 + MTC LTR MaLR 107 419 -2 7 1536 1244 41 0 7 chr6 124776658 124776806 -24740231 - B1_Mus2 SINE Alu 0 147 1 7 1536 605 182 56 42 chr6 124777227 124777370 -24739667 - B1F1 SINE Alu -1 148 4 7 1537 561 172 43 0 chr6 124780797 124780913 -24736124 - Lx9 LINE L1 -2 7642 7522 7 1537 637 178 144 23 chr6 124780934 124781066 -24735971 - B1_Mur2 SINE Alu 0 149 2 7 1537 1678 31 5 0 chr6 124781150 124781343 -24735694 - B2_Mm2 SINE B2 0 195 2 7 1537 243 0 0 0 chr6 124781583 124781610 -24735427 + (TTG)n Simple_repeat Simple_repeat 2 28 0 7 1537 552 297 7 0 chr6 124781729 124781874 -24735163 - RSINE1 SINE B4 -1 164 19 7 1537 333 269 38 8 chr6 124781897 124782006 -24735031 - PB1D7 SINE Alu -2 118 11 7 1537 734 244 12 6 chr6 124782731 124782900 -24734137 + B2_Mm2 SINE B2 2 171 -24 7 1537 306 125 0 0 chr6 124783739 124783787 -24733250 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1537 387 0 0 0 chr6 124783787 124783830 -24733207 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1537 22 0 0 0 chr6 124785070 124785092 -24731945 + AT_rich Low_complexity Low_complexity 1 22 0 7 1537 394 320 39 34 chr6 124786188 124786253 -24730784 + B4 SINE B4 26 91 -201 7 1537 701 235 0 0 chr6 124786253 124786389 -24730648 + B1_Mus1 SINE Alu 2 137 -11 7 1537 623 226 53 0 chr6 124786420 124786553 -24730484 + B3 SINE B2 2 141 -75 7 1537 219 240 12 128 chr6 124786611 124786697 -24730340 + ID4_ SINE ID 2 77 -6 7 1537 358 227 61 10 chr6 124786756 124786854 -24730183 + L1MC4 LINE L1 7927 8029 -13 7 1537 193 357 14 0 chr6 124788466 124788536 -24728501 + MIRb SINE MIR 168 238 -30 7 1537 261 262 24 48 chr6 124788580 124788664 -24728373 - ID4_ SINE ID -1 82 1 7 1537 253 219 76 34 chr6 124788676 124788794 -24728243 - RMER1C Other Other 0 1342 1220 7 1537 229 256 123 36 chr6 124788694 124788832 -24728205 - Lx8 LINE L1 0 7473 7324 7 1537 216 337 129 0 chr6 124788855 124788956 -24728081 - B1F SINE Alu -35 114 1 7 1537 324 244 51 0 chr6 124789021 124789099 -24727938 - Kanga1c DNA Tc2 -643 86 5 7 1537 235 324 15 0 chr6 124789181 124789249 -24727788 + L2b LINE L2 3303 3371 -4 7 1537 210 256 0 0 chr6 124790869 124790912 -24726125 + (TGG)n Simple_repeat Simple_repeat 3 45 0 7 1537 1497 68 11 0 chr6 124791191 124791381 -24725656 - B2_Mm1t SINE B2 -1 192 1 7 1537 195 129 0 0 chr6 124791798 124791829 -24725208 + (TCC)n Simple_repeat Simple_repeat 3 33 0 7 1537 217 277 15 0 chr6 124792011 124792076 -24724961 + (CCCA)n Simple_repeat Simple_repeat 1 66 0 7 1537 339 250 128 21 chr6 124792613 124792707 -24724330 - PB1D7 SINE Alu -11 109 6 7 1537 236 279 0 47 chr6 124792653 124792717 -24724320 - B4A SINE B4 -150 142 82 7 1537 591 279 7 7 chr6 124792859 124793000 -24724037 + RSINE1 SINE B4 11 151 -14 7 1537 434 219 100 86 chr6 124793083 124793223 -24723814 + B4A SINE B4 4 145 -147 7 1537 663 209 15 8 chr6 124793326 124793456 -24723581 + B1_Mur2 SINE Alu 1 131 -18 7 1537 1447 74 0 11 chr6 124793815 124794006 -24723031 + B2_Mm2 SINE B2 1 189 -6 7 1537 714 104 329 15 chr6 124794016 124794153 -24722884 + B2_Mm2 SINE B2 2 181 -14 7 1537 606 82 345 0 chr6 124794173 124794283 -24722754 - B1_Mur4 SINE Alu -2 148 1 7 1537 788 184 155 46 chr6 124794283 124794476 -24722561 - B3 SINE B2 -1 215 1 7 1537 483 278 41 20 chr6 124794525 124794672 -24722365 - RSINE1 SINE B4 -12 153 4 7 1537 262 330 73 9 chr6 124794676 124794786 -24722251 - PB1D10 SINE Alu 0 117 1 7 1537 430 226 0 19 chr6 124796640 124796744 -24720293 - B1F SINE Alu -2 147 46 7 1537 241 196 54 0 chr6 124796877 124796933 -24720104 - ID4 SINE ID -4 79 21 7 1537 217 229 48 16 chr6 124796879 124796941 -24720096 - ID SINE ID -146 78 15 7 1537 687 311 24 5 chr6 124796972 124797185 -24719852 - ID_B1 SINE B4 -7 217 1 7 1537 464 270 14 7 chr6 124797701 124797839 -24719198 - MIR SINE MIR -46 216 78 7 1537 211 67 21 43 chr6 124797869 124797916 -24719121 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 7 1537 631 148 139 0 chr6 124797918 124798040 -24718997 - B1_Mus2 SINE Alu 0 147 9 7 1537 1136 85 12 0 chr6 124798065 124798230 -24718807 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 7 1537 1208 63 0 0 chr6 124798230 124798373 -24718664 - B1_Mus2 SINE Alu -2 145 3 7 1537 327 137 0 40 chr6 124798429 124798505 -24718532 + CT-rich Low_complexity Low_complexity 3 75 0 7 1537 428 162 15 153 chr6 124798982 124799113 -24717924 + PB1D10 SINE Alu 2 114 -3 7 1537 750 207 35 0 chr6 124799151 124799296 -24717741 + B1_Mur4 SINE Alu 1 150 0 7 1537 279 0 0 0 chr6 124799305 124799336 -24717701 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1537 558 204 0 26 chr6 124799721 124799837 -24717200 + PB1D9 SINE Alu 1 113 -7 7 1537 513 98 0 0 chr6 124800080 124800162 -24716875 + L1Md_F2 LINE L1 6501 6582 0 7 1537 807 188 7 59 chr6 124800322 124800475 -24716562 + B1_Mur4 SINE Alu 3 147 -3 7 1537 639 39 0 0 chr6 124800481 124800559 -24716478 + (GA)n Simple_repeat Simple_repeat 1 78 0 7 1537 1532 63 0 5 chr6 124801226 124801416 -24715621 + B2_Mm2 SINE B2 3 191 -4 7 1537 308 89 18 0 chr6 124801450 124801506 -24715531 + B2_Mm1t SINE B2 137 193 0 7 1537 352 23 0 0 chr6 124801502 124801545 -24715492 + B2_Mm2 SINE B2 104 146 -49 7 1537 348 92 375 0 chr6 124801602 124801706 -24715331 + B2_Mm2 SINE B2 47 189 -6 7 1537 387 278 86 29 chr6 124801908 124802082 -24714955 - MIRb SINE MIR -27 241 58 7 1537 404 303 24 92 chr6 124802108 124802315 -24714722 + MER20 DNA MER1_type 1 193 -26 7 1537 297 294 12 12 chr6 124802333 124802419 -24714618 - BC1_Mm scRNA scRNA -53 99 14 7 1537 1046 149 192 6 chr6 124802712 124802894 -24714143 - B3 SINE B2 0 216 1 7 1537 244 216 0 0 chr6 124803341 124803392 -24713645 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1537 754 230 0 7 chr6 124803555 124803704 -24713333 + B1_Mur1 SINE Alu 1 148 -1 7 1537 471 231 18 27 chr6 124803724 124803835 -24713202 + B3 SINE B2 6 115 -101 7 1537 769 206 0 7 chr6 124803881 124804018 -24713019 - B1_Mus2 SINE Alu -3 144 9 7 1537 873 54 0 0 chr6 124804110 124804221 -24712816 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 7 1537 1515 44 5 5 chr6 124805380 124805564 -24711473 + B2_Mm2 SINE B2 2 185 -10 7 1537 755 209 7 7 chr6 124805571 124805711 -24711326 + B1_Mur1 SINE Alu 5 144 -5 7 1537 241 151 82 0 chr6 124806153 124806226 -24710811 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 1537 475 146 29 0 chr6 124806731 124806868 -24710169 + (TCTG)n Simple_repeat Simple_repeat 4 144 0 7 1537 23 0 0 0 chr6 124807290 124807313 -24709724 + GC_rich Low_complexity Low_complexity 1 23 0 7 1537 287 239 0 11 chr6 124807749 124807838 -24709199 + GA-rich Low_complexity Low_complexity 1 88 0 7 1537 273 284 19 19 chr6 124813369 124813473 -24703564 + GA-rich Low_complexity Low_complexity 1 104 0 7 1537 231 200 0 0 chr6 124813775 124813820 -24703217 + CT-rich Low_complexity Low_complexity 2 46 0 7 1537 201 220 16 33 chr6 124813984 124814045 -24702992 + G-rich Low_complexity Low_complexity 5 64 0 7 1537 414 79 0 0 chr6 124814625 124814688 -24702349 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1537 180 0 0 0 chr6 124814688 124814708 -24702329 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1537 252 0 0 0 chr6 124815197 124815225 -24701812 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1537 278 253 53 0 chr6 124815298 124815373 -24701664 + MIRc SINE MIR 35 113 -155 8 1537 296 83 21 0 chr6 124815467 124815515 -24701522 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1537 218 189 0 0 chr6 124815541 124815578 -24701459 - RSINE1 SINE B4 -46 119 83 8 1537 325 331 6 39 chr6 124816424 124816606 -24700431 + C-rich Low_complexity Low_complexity 4 179 0 8 1537 191 176 48 108 chr6 124817314 124817397 -24699640 + L2a LINE L2 3322 3399 -27 8 1537 233 269 15 0 chr6 124817940 124818007 -24699030 + RLTR18B LTR ERVK 436 503 -9 8 1537 525 233 156 24 chr6 124818241 124818401 -24698636 + B3A SINE B2 1 183 -15 8 1537 351 0 0 0 chr6 124818401 124818440 -24698597 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 8 1537 712 178 19 42 chr6 124818451 124818630 -24698407 + B3 SINE B2 1 179 -16 8 1537 1398 62 11 0 chr6 124818631 124818807 -24698230 + B2_Mm1t SINE B2 2 179 -14 8 1537 447 37 0 5 chr6 124818841 124818906 -24698131 + B2_Mm2 SINE B2 47 109 -107 8 1537 4494 180 70 12 chr6 124818956 124819850 -24697187 + Lx5 LINE L1 6104 7049 -1 8 1537 204 40 0 0 chr6 124820068 124820093 -24696944 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 8 1537 224 312 5 30 chr6 124820775 124820913 -24696124 - MIR SINE MIR 0 262 133 8 1537 2412 183 236 21 chr6 124820940 124821029 -24696008 + Lx9 LINE L1 6803 6886 -758 8 1537 2015 164 34 21 chr6 124821029 124821408 -24695629 - ORR1C2 LTR MaLR 0 384 1 8 1537 2412 183 236 21 chr6 124821408 124821895 -24695142 + Lx9 LINE L1 6887 7461 -183 8 1537 237 33 0 0 chr6 124821895 124821925 -24695112 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1537 2412 183 236 21 chr6 124821925 124822000 -24695037 + Lx9 LINE L1 7462 7595 -49 8 1537 377 221 0 55 chr6 124823590 124823681 -24693356 + PB1D10 SINE Alu 7 92 -25 8 1537 293 321 32 104 chr6 124823594 124823719 -24693318 + MT2B2 LTR ERVL 175 290 -294 8 1537 514 165 9 37 chr6 124823849 124823956 -24693081 - B1_Mus2 SINE Alu 0 147 44 8 1537 881 268 62 111 chr6 124824207 124824593 -24692444 - MTE2b LTR MaLR 0 379 13 8 1537 249 109 18 35 chr6 124824696 124824753 -24692284 + CT-rich Low_complexity Low_complexity 6 61 0 8 1537 351 0 0 0 chr6 124824767 124824806 -24692231 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1537 356 247 0 92 chr6 124824806 124824904 -24692133 - RSINE1 SINE B4 -69 96 8 8 1537 359 228 0 71 chr6 124825368 124825453 -24691584 + ID4_ SINE ID 3 81 -2 8 1537 198 0 0 0 chr6 124825463 124825485 -24691552 + (GGGTG)n Simple_repeat Simple_repeat 1 22 0 8 1537 192 77 0 0 chr6 124825582 124825608 -24691429 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1537 875 139 21 0 chr6 124825608 124825752 -24691285 - B1_Mus1 SINE Alu 0 148 2 8 1537 704 258 77 10 chr6 124825775 124825971 -24691066 - B3 SINE B2 -6 210 2 8 1537 316 326 196 12 chr6 124826101 124826346 -24690691 - B4A SINE B4 0 292 3 8 1537 619 313 19 9 chr6 124826824 124827040 -24689997 + B4A SINE B4 8 225 -67 8 1537 772 169 0 0 chr6 124827047 124827171 -24689866 + B3 SINE B2 1 124 -92 8 1537 360 0 0 0 chr6 124827193 124827233 -24689804 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 8 1537 1196 48 0 20 chr6 124827458 124827597 -24689440 + B1_Mus2 SINE Alu 1 139 -8 8 1537 198 0 0 0 chr6 124827597 124827619 -24689418 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 8 1537 489 255 62 97 chr6 124827628 124827854 -24689183 + ID_B1 SINE B4 4 221 -3 8 1537 690 160 114 8 chr6 124827922 124828054 -24688983 + B1_Mur2 SINE Alu 1 146 -3 8 1537 216 286 14 14 chr6 124828077 124828148 -24688889 + B4 SINE B4 2 72 -220 8 1537 1463 75 27 0 chr6 124828333 124828521 -24688516 - B2_Mm2 SINE B2 -1 194 2 8 1537 235 94 57 0 chr6 124828737 124828763 -24688274 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 8 1537 953 188 0 0 chr6 124828763 124828907 -24688130 - B1_Mur4 SINE Alu -6 144 1 8 1537 235 94 57 0 chr6 124828907 124828933 -24688104 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1537 227 212 43 43 chr6 124828934 124829003 -24688034 - ID4_ SINE ID 0 83 15 8 1537 378 330 0 25 chr6 124830041 124830159 -24686878 + PB1D10 SINE Alu 3 117 0 8 1537 569 245 88 0 chr6 124830160 124830319 -24686718 + B3 SINE B2 23 195 -21 8 1537 400 217 0 0 chr6 124830318 124830387 -24686650 + ID_B1 SINE B4 146 214 -10 8 1537 305 331 22 52 chr6 124830515 124830649 -24686388 + MER63D DNA AcHobo 272 401 -660 8 1537 219 277 43 0 chr6 124830699 124830793 -24686244 + (CATATA)n Simple_repeat Simple_repeat 6 103 0 8 1537 695 163 8 0 chr6 124830799 124830928 -24686109 - Lx LINE L1 0 6654 6525 8 1537 719 201 22 0 chr6 124830939 124831073 -24685964 + B1_Mm SINE Alu 11 147 0 8 1537 619 216 259 17 chr6 124831491 124831665 -24685372 + B3 SINE B2 1 216 0 8 1537 402 300 45 171 chr6 124832177 124832551 -24684486 + Lx8 LINE L1 7146 7472 -1 8 1537 205 186 0 28 chr6 124832628 124832700 -24684337 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 8 1537 530 234 8 31 chr6 124832722 124832850 -24684187 - RSINE1 SINE B4 -37 128 4 8 1537 490 252 49 68 chr6 124832997 124833159 -24683878 + ID_B1 SINE B4 6 164 -60 8 1537 513 47 0 0 chr6 124833320 124833384 -24683653 + (CA)n Simple_repeat Simple_repeat 2 65 0 8 1537 306 264 97 0 chr6 124833885 124833957 -24683080 + ID4_ SINE ID 3 81 -2 8 1537 245 388 94 61 chr6 124834094 124834456 -24682581 + LTR33 LTR ERVL 72 445 -70 8 1537 593 49 12 0 chr6 124834699 124834780 -24682257 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 8 1537 201 39 0 0 chr6 124835775 124835801 -24681236 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8 1537 215 265 0 0 chr6 124836522 124836571 -24680466 - MIRm SINE MIR -3 273 225 8 1537 474 261 50 8 chr6 124837325 124837445 -24679592 + PB1 SINE Alu 3 127 0 8 1537 373 284 26 35 chr6 124838461 124838574 -24678463 + PB1D10 SINE Alu 4 115 -2 8 1537 1611 194 13 86 chr6 124839154 124839549 -24677488 + ORR1C2 LTR MaLR 1 366 -18 8 1537 778 179 13 46 chr6 124840116 124840268 -24676769 - B1_Mur3 SINE Alu -1 148 2 8 1537 225 351 62 38 chr6 124840312 124840472 -24676565 + L2 LINE L2 2694 2857 -562 8 1537 1096 178 66 5 chr6 124840478 124840676 -24676361 + B3 SINE B2 1 210 -6 8 1537 251 125 0 0 chr6 124840871 124840911 -24676126 + B3 SINE B2 2 41 -175 8 1537 754 309 133 31 chr6 124840983 124841373 -24675664 - Charlie1a DNA MER1_type -1023 432 3 8 1537 538 293 101 74 chr6 124841583 124841841 -24675196 - B4 SINE B4 -27 265 1 8 1537 504 210 40 0 chr6 124841885 124841985 -24675052 - PB1 SINE Alu -3 124 21 8 1537 234 359 43 43 chr6 124842013 124842176 -24674861 + MLT1J LTR MaLR 107 269 -243 8 1537 244 305 27 62 chr6 124842145 124842257 -24674780 + MER102c DNA MER1_type 220 327 -4 8 1537 599 178 0 15 chr6 124842266 124842293 -24674744 + (CCCA)n Simple_repeat Simple_repeat 4 30 0 8 1537 2241 111 9 58 chr6 124842293 124842637 -24674400 - ORR1A2 LTR MaLR 0 327 1 8 1537 599 178 0 15 chr6 124842637 124842740 -24674297 + (CCCA)n Simple_repeat Simple_repeat 3 104 0 8 1537 293 0 0 26 chr6 124842927 124842965 -24674072 + (GA)n Simple_repeat Simple_repeat 1 37 0 8 1537 198 0 0 0 chr6 124843473 124843495 -24673542 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1537 369 217 0 0 chr6 124843608 124843691 -24673346 + (TA)n Simple_repeat Simple_repeat 2 84 0 8 1537 217 353 0 0 chr6 124843799 124843867 -24673170 - B4 SINE B4 -220 72 5 8 1537 2885 79 50 3 chr6 124843970 124844352 -24672685 + MTB LTR MaLR 1 400 0 8 1537 322 246 52 34 chr6 124844435 124844550 -24672487 - B1_Mus1 SINE Alu 0 117 3 8 1537 301 173 0 0 chr6 124844661 124844713 -24672324 - L1MB4 LINE L1 -4 6176 6125 8 1537 351 217 35 183 chr6 124844738 124844795 -24672242 - B1F SINE Alu -5 144 86 8 1537 1227 55 7 0 chr6 124844795 124844941 -24672096 - B1_Mm SINE Alu 0 147 1 8 1537 351 217 35 183 chr6 124844941 124845052 -24671985 - B1F SINE Alu -64 85 2 8 1537 310 237 40 0 chr6 124845078 124845154 -24671883 - ID2 SINE ID -2 81 3 8 1537 1230 68 0 0 chr6 124845255 124845402 -24671635 - B1_Mus2 SINE Alu 0 147 1 8 1537 576 205 87 0 chr6 124845473 124845600 -24671437 + ID_B1 SINE B4 84 221 -3 8 1537 496 291 20 26 chr6 124845855 124846007 -24671030 - ID_B1 SINE B4 -2 222 72 8 1537 610 185 211 7 chr6 124846019 124846171 -24670866 - B3 SINE B2 -6 210 28 8 1537 461 260 40 0 chr6 124846166 124846266 -24670771 - B1F2 SINE Alu -33 116 13 8 1537 201 196 0 0 chr6 124846270 124846316 -24670721 + GA-rich Low_complexity Low_complexity 2 47 0 8 1537 356 303 123 36 chr6 124846361 124846580 -24670457 + B4 SINE B4 7 244 -48 8 1537 336 64 0 0 chr6 124846585 124846632 -24670405 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1537 288 0 0 0 chr6 124846666 124846698 -24670339 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8 1537 605 168 184 0 chr6 124846709 124846834 -24670203 - B1_Mur3 SINE Alu 0 149 2 8 1537 244 310 0 12 chr6 124847180 124847265 -24669772 - L1MB4 LINE L1 -89 6094 6011 8 1537 513 84 0 0 chr6 124847280 124847351 -24669686 + (CACG)n Simple_repeat Simple_repeat 1 71 0 8 1537 307 372 33 26 chr6 124847441 124847593 -24669444 - MER102a DNA MER1_type -4 326 186 9 1537 1161 61 0 20 chr6 124847633 124847646 -24669391 - B1_Mus2 SINE Alu 0 147 137 9 1537 720 0 0 0 chr6 124847646 124847726 -24669311 + (TTTC)n Simple_repeat Simple_repeat 3 82 0 9 1537 1161 61 0 20 chr6 124847726 124847862 -24669175 - B1_Mus2 SINE Alu -11 136 1 9 1537 380 270 79 21 chr6 124847868 124847918 -24669119 - B1_Mur1 SINE Alu -1 148 97 9 1537 522 0 0 0 chr6 124847918 124847976 -24669061 + (TC)n Simple_repeat Simple_repeat 1 58 0 9 1537 380 270 79 21 chr6 124847976 124848065 -24668972 - B1_Mur1 SINE Alu -53 96 1 9 1537 233 370 46 23 chr6 124848065 124848190 -24668847 - MER102a DNA MER1_type -124 206 79 9 1537 246 32 0 0 chr6 124848193 124848224 -24668813 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1537 690 75 0 0 chr6 124848367 124848473 -24668564 + (TG)n Simple_repeat Simple_repeat 1 106 0 9 1537 721 302 27 9 chr6 124848733 124848957 -24668080 + B4A SINE B4 1 228 -64 9 1537 428 303 0 0 chr6 124848965 124849074 -24667963 + B1_Mur2 SINE Alu 8 116 -33 9 1537 225 0 0 0 chr6 124849074 124849099 -24667938 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 9 1537 1035 188 62 29 chr6 124849156 124849364 -24667673 - B3 SINE B2 -1 215 1 9 1537 962 149 7 7 chr6 124849448 124849597 -24667440 - B1_Mur3 SINE Alu 0 149 1 9 1537 437 259 0 17 chr6 124849641 124849759 -24667278 + PB1D10 SINE Alu 1 116 -1 9 1537 215 258 27 120 chr6 124849770 124849845 -24667192 + ID4 SINE ID 3 70 -13 9 1537 351 206 110 18 chr6 124849871 124849980 -24667057 - PB1D9 SINE Alu -1 119 1 9 1537 186 103 0 0 chr6 124850688 124850717 -24666320 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1537 383 336 27 7 chr6 124851255 124851402 -24665635 + MLT1F1 LTR MaLR 308 457 -112 9 1537 237 280 80 0 chr6 124851621 124851696 -24665341 + ID2 SINE ID 3 83 0 9 1537 213 65 0 0 chr6 124851701 124851732 -24665305 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 9 1537 340 190 127 0 chr6 124852660 124852739 -24664298 - B4A SINE B4 -198 94 6 9 1537 432 130 0 0 chr6 124852744 124852813 -24664224 + (ATG)n Simple_repeat Simple_repeat 1 69 0 9 1537 364 301 37 56 chr6 124852823 124852985 -24664052 - RSINE1 SINE B4 -3 162 4 9 1537 763 147 14 22 chr6 124853002 124853141 -24663896 - B1_Mur4 SINE Alu -1 149 12 9 1537 354 305 46 102 chr6 124853006 124853151 -24663886 - B4A SINE B4 -72 220 85 9 1537 270 340 68 0 chr6 124853151 124853254 -24663783 - PB1D10 SINE Alu -7 110 1 9 1537 354 305 46 102 chr6 124853254 124853305 -24663732 - B4A SINE B4 -208 84 35 9 1537 291 256 0 44 chr6 124853305 124853344 -24663693 - PB1 SINE Alu -2 125 40 9 1537 197 132 26 0 chr6 124853928 124853966 -24663071 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1537 207 0 0 0 chr6 124854401 124854424 -24662613 + (CGGG)n Simple_repeat Simple_repeat 1 23 0 9 1537 290 249 59 23 chr6 124855043 124855140 -24661897 - MIR SINE MIR -117 151 52 9 1537 231 61 0 0 chr6 124855206 124855239 -24661798 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 9 1537 487 208 0 0 chr6 124855642 124855738 -24661299 - ID_B1 SINE B4 -37 187 92 9 1537 556 251 234 0 chr6 124855840 124856015 -24661022 + ID_B1 SINE B4 8 223 -1 9 1537 978 195 84 0 chr6 124856018 124856208 -24660829 + B3 SINE B2 3 208 -8 9 1537 823 176 28 0 chr6 124856219 124856361 -24660676 - B1_Mus2 SINE Alu -1 146 1 9 1537 411 277 139 61 chr6 124856385 124856550 -24660487 + B3A SINE B2 6 183 -15 9 1537 668 54 11 0 chr6 124857020 124857113 -24659924 - B1_Mus1 SINE Alu -17 131 38 9 1537 461 265 83 8 chr6 124857390 124857523 -24659514 - ID_B1 SINE B4 0 224 82 9 1537 377 277 0 0 chr6 124858051 124858134 -24658903 + ID_B1 SINE B4 85 167 -57 9 1537 273 243 17 142 chr6 124858154 124858274 -24658763 + RSINE1 SINE B4 60 164 -1 9 1537 209 219 0 0 chr6 124858275 124858316 -24658721 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1537 618 205 43 0 chr6 124858874 124858991 -24658046 + B3 SINE B2 8 129 -87 9 1537 240 86 0 0 chr6 124859037 124859072 -24657965 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 1537 22 0 0 0 chr6 124859518 124859540 -24657497 + AT_rich Low_complexity Low_complexity 1 22 0 9 1537 837 129 0 0 chr6 124861071 124861203 -24655834 + B1_Mur3 SINE Alu 9 140 -9 9 1537 234 0 0 0 chr6 124861203 124861229 -24655808 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1537 201 108 0 0 chr6 124861432 124861469 -24655568 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 9 1537 423 0 0 0 chr6 124861470 124861517 -24655520 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 1537 461 47 16 0 chr6 124861872 124861936 -24655101 + (TC)n Simple_repeat Simple_repeat 2 66 0 9 1537 189 231 0 55 chr6 124862253 124862308 -24654729 - MIRc SINE MIR -119 149 98 9 1537 1008 95 7 28 chr6 124862440 124862581 -24654456 - B1_Mus2 SINE Alu -9 138 1 9 1537 687 256 101 15 chr6 124862600 124862798 -24654239 - B3 SINE B2 0 216 2 9 1537 211 275 60 36 chr6 124862984 124863067 -24653970 + B1F SINE Alu 65 149 0 9 1537 445 202 0 0 chr6 124863090 124863169 -24653868 + PB1D9 SINE Alu 22 100 -20 9 1537 245 275 0 12 chr6 124864652 124864733 -24652304 + CT-rich Low_complexity Low_complexity 3 82 0 9 1537 25 0 0 0 chr6 124867043 124867068 -24649969 + AT_rich Low_complexity Low_complexity 1 25 0 9 1537 226 282 11 50 chr6 124867283 124867462 -24649575 + (CGGGG)n Simple_repeat Simple_repeat 1 172 0 9 1537 29 28 0 0 chr6 124867532 124867568 -24649469 + GC_rich Low_complexity Low_complexity 1 36 0 9 1537 204 125 0 0 chr6 124867715 124867747 -24649290 + (CGG)n Simple_repeat Simple_repeat 3 34 0 9 1537 206 105 0 26 chr6 124867846 124867885 -24649152 + (CGGG)n Simple_repeat Simple_repeat 2 39 0 9 1537 342 256 6 72 chr6 124868045 124868226 -24648811 + G-rich Low_complexity Low_complexity 1 169 0 9 1537 423 0 0 0 chr6 124869077 124869124 -24647913 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1537 360 139 14 28 chr6 124869207 124869279 -24647758 + B1F SINE Alu 32 111 -16 9 1537 372 261 10 71 chr6 124871206 124871305 -24645732 - RSINE1 SINE B4 -45 120 28 9 1537 755 192 126 16 chr6 124871503 124871693 -24645344 - B3 SINE B2 -1 215 5 9 1537 245 168 71 33 chr6 124871707 124871807 -24645230 - FAM SINE Alu 0 315 257 9 1537 441 0 0 0 chr6 124871813 124871862 -24645175 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1537 689 273 12 0 chr6 124871884 124872045 -24644992 - B3A SINE B2 -31 167 5 9 1537 268 224 0 0 chr6 124872051 124872100 -24644937 - MTE2b LTR MaLR -195 184 136 9 1537 272 188 28 28 chr6 124872124 124872195 -24644842 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 9 1537 254 340 97 0 chr6 124872322 124872425 -24644612 + PB1D10 SINE Alu 22 134 -15 9 1537 393 22 0 0 chr6 124872425 124872471 -24644566 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1537 1411 77 11 6 chr6 124872496 124872679 -24644358 + B2_Mm2 SINE B2 3 186 -9 9 1537 480 210 156 31 chr6 124872860 124872988 -24644049 - B1_Mur3 SINE Alu -1 148 5 9 1537 634 266 60 10 chr6 124873122 124873323 -24643714 - B3 SINE B2 0 216 6 9 1537 1177 69 7 0 chr6 124873484 124873629 -24643408 + B1_Mus2 SINE Alu 2 147 0 9 1537 183 42 0 0 chr6 124873631 124873655 -24643382 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 9 1537 1296 87 38 0 chr6 124873665 124873849 -24643188 + B2_Mm1a SINE B2 1 191 -2 9 1537 925 57 0 0 chr6 124873876 124873999 -24643038 + B1_Mus2 SINE Alu 25 147 0 9 1537 1663 37 0 0 chr6 124874282 124874471 -24642566 + B2_Mm1a SINE B2 2 190 -3 9 1537 282 180 16 32 chr6 124874696 124874759 -24642278 + MER3 DNA MER1_type 141 202 -7 9 1537 280 180 0 0 chr6 124874723 124874773 -24642264 - MER3 DNA MER1_type -119 90 41 9 1537 793 117 0 8 chr6 124874832 124874953 -24642084 + B1_Mur3 SINE Alu 9 128 -21 9 1537 344 276 208 30 chr6 124874967 124875135 -24641902 - B3A SINE B2 0 198 1 9 1537 300 256 55 42 chr6 124875138 124875266 -24641771 - BC1_Mm scRNA scRNA -20 132 3 9 1537 255 253 33 11 chr6 124876292 124876384 -24640653 + GA-rich Low_complexity Low_complexity 1 94 0 9 1537 486 0 0 0 chr6 124876496 124876550 -24640487 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 1537 214 290 29 0 chr6 124876550 124876619 -24640418 - ID2 SINE ID -11 72 2 9 1537 667 227 164 38 chr6 124876755 124876938 -24640099 + B3 SINE B2 5 210 -6 9 1537 24 32 0 0 chr6 124876944 124876975 -24640062 + AT_rich Low_complexity Low_complexity 1 31 0 9 1537 725 204 0 7 chr6 124876978 124877116 -24639921 - B1_Mur2 SINE Alu -3 146 10 9 1537 266 281 9 103 chr6 124877021 124877128 -24639909 - MT2B LTR ERVL -344 257 161 9 1537 2393 48 0 3 chr6 124877135 124877429 -24639608 - L1Md_F2 LINE L1 0 6582 6290 9 1537 638 310 6 25 chr6 124877470 124877632 -24639405 + RSINE1 SINE B4 3 161 -4 9 1537 296 267 109 25 chr6 124877672 124877791 -24639246 + ID_B1 SINE B4 94 222 -2 9 1537 287 232 0 0 chr6 124877793 124877849 -24639188 + ID4_ SINE ID 2 57 -26 9 1537 1165 51 13 0 chr6 124877851 124878008 -24639029 + (CA)n Simple_repeat Simple_repeat 2 160 0 9 1537 375 292 0 34 chr6 124878233 124878350 -24638687 + PB1D10 SINE Alu 1 113 -4 9 1537 201 326 0 75 chr6 124878383 124878476 -24638561 + L2c LINE L2 3295 3380 -7 9 1537 1400 95 16 0 chr6 124878679 124878869 -24638168 - B2_Mm2 SINE B2 0 195 3 9 1537 3416 46 0 0 chr6 124878869 124879308 -24637729 + RLTR13C2 LTR ERVK 1 439 -369 9 1537 416 105 48 0 chr6 124879364 124879451 -24637586 - B1_Mur3 SINE Alu -51 96 5 1 1537 253 241 67 78 chr6 124879377 124879467 -24637570 - MT2B LTR ERVL -361 240 152 1 1537 484 249 119 40 chr6 124879476 124879652 -24637385 - B3 SINE B2 0 216 27 1 1537 27 0 0 0 chr6 124879786 124879813 -24637224 + AT_rich Low_complexity Low_complexity 1 27 0 1 1537 283 213 78 26 chr6 124879852 124879929 -24637108 - B1F2 SINE Alu 0 120 40 1 1537 256 318 0 0 chr6 124880675 124880741 -24636296 + tRNA-Ala-GCA tRNA tRNA 2 67 -8 1 1537 369 0 0 0 chr6 124882893 124882934 -24634103 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1537 1090 206 9 9 chr6 124883038 124883249 -24633788 + B3 SINE B2 2 212 -4 1 1537 273 89 0 0 chr6 124883374 124883419 -24633618 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1537 675 172 44 7 chr6 124883419 124883554 -24633483 - B1_Mur4 SINE Alu 0 150 11 1 1537 1182 41 0 20 chr6 124883622 124883771 -24633266 + B1_Mus2 SINE Alu 1 146 -1 1 1537 1378 154 181 9 chr6 124886246 124886561 -24630476 - ORR1D1 LTR MaLR 0 374 6 1 1537 228 135 0 0 chr6 124886972 124887009 -24630028 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1537 362 230 142 0 chr6 124887161 124887268 -24629769 + PB1D9 SINE Alu 1 120 0 1 1537 376 238 0 36 chr6 124887879 124887962 -24629075 - ID4 SINE ID -2 81 2 1 1537 266 258 22 130 chr6 124888143 124888281 -24628756 + MT2B LTR ERVL 137 259 -342 1 1537 563 202 40 16 chr6 124888182 124888308 -24628729 + B1_Mur4 SINE Alu 10 138 -12 1 1537 271 296 56 61 chr6 124888300 124888399 -24628638 + RMER17A LTR ERVK 313 414 -337 1 1537 667 188 42 0 chr6 124888399 124888543 -24628494 - B1_Mur4 SINE Alu 0 150 1 1 1537 271 296 56 61 chr6 124888543 124888623 -24628414 + RMER17A LTR ERVK 415 491 -260 1 1537 1627 31 0 40 chr6 124888979 124889179 -24627858 - B2_Mm1t SINE B2 0 193 2 1 1537 363 198 119 84 chr6 124889520 124889663 -24627374 + B1F1 SINE Alu 2 149 0 1 1537 982 125 7 14 chr6 124889746 124889892 -24627145 - B1_Mur4 SINE Alu -1 149 5 1 1537 243 0 0 0 chr6 124890046 124890073 -24626964 + (GTTTG)n Simple_repeat Simple_repeat 1 27 0 1 1537 297 211 27 40 chr6 124890104 124890178 -24626859 - PB1D10 SINE Alu -2 115 43 1 1537 189 107 0 0 chr6 124890427 124890455 -24626582 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1537 1211 48 0 0 chr6 124890458 124890603 -24626434 - B1_Mm SINE Alu 0 147 3 1 1537 982 125 7 14 chr6 124890771 124890917 -24626120 + B1_Mur4 SINE Alu 5 149 -1 1 1537 233 196 39 19 chr6 124891409 124891461 -24625576 + ID_B1 SINE B4 104 156 -68 1 1537 477 0 0 0 chr6 124891504 124891557 -24625480 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1537 367 276 82 45 chr6 124891563 124891673 -24625364 - PB1D7 SINE Alu -3 117 1 1 1537 573 15 0 0 chr6 124891700 124891766 -24625271 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 1 1537 813 245 24 19 chr6 124891767 124891975 -24625062 - ID_B1 SINE B4 -14 210 2 1 1537 304 309 53 0 chr6 124891979 124892073 -24624964 - L1MD LINE L1 -3375 2771 2673 1 1537 747 0 0 0 chr6 124892091 124892174 -24624863 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 1 1537 1060 31 0 0 chr6 124892176 124892304 -24624733 - B1_Mus2 SINE Alu -6 141 14 1 1537 1570 31 0 77 chr6 124892305 124892514 -24624523 + B2_Mm1a SINE B2 1 193 0 1 1537 513 228 38 94 chr6 124892514 124892536 -24624501 - B4 SINE B4 -194 98 77 1 1537 708 45 0 0 chr6 124892541 124892629 -24624408 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 1 1537 408 179 252 49 chr6 124892644 124892767 -24624270 - B1_Mur1 SINE Alu 0 149 2 1 1537 1120 218 5 0 chr6 124892788 124892990 -24624047 - B3 SINE B2 -13 203 1 1 1537 1278 281 80 11 chr6 124893090 124893464 -24623573 - MTD LTR MaLR 0 419 20 1 1537 803 239 134 14 chr6 124893478 124893820 -24623217 + RLTR28B LTR ERVL 1 500 -24 1 1537 602 200 49 12 chr6 124893940 124894091 -24622946 + B3 SINE B2 25 190 -5 1 1537 1334 104 6 0 chr6 124894180 124894362 -24622675 - B2_Mm1t SINE B2 -9 184 2 1 1537 368 252 57 40 chr6 124894425 124894549 -24622488 - B3 SINE B2 -1 215 90 1 1537 210 255 0 0 chr6 124894539 124894586 -24622451 - B2_Mm2 SINE B2 -114 81 35 1 1537 375 291 102 58 chr6 124894638 124894765 -24622272 + RMER10A LTR ERVL 130 259 -183 1 1537 200 34 0 33 chr6 124894765 124894795 -24622242 + (CCA)n Simple_repeat Simple_repeat 1 29 0 1 1537 375 291 102 58 chr6 124894795 124894962 -24622075 + RMER10A LTR ERVL 260 437 -5 1 1537 253 309 0 0 chr6 124895006 124895074 -24621963 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1537 304 310 212 58 chr6 124895074 124895211 -24621826 - RSINE1 SINE B4 0 165 8 1 1537 233 0 62 0 chr6 124895452 124895484 -24621553 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1537 1199 42 0 14 chr6 124895484 124895630 -24621407 - B1_Mus2 SINE Alu -3 144 1 1 1537 543 108 62 31 chr6 124895630 124895726 -24621311 - B1_Mus2 SINE Alu -2 145 47 1 1537 1150 116 17 23 chr6 124895784 124895960 -24621077 + B2_Mm2 SINE B2 15 189 -6 1 1537 416 262 93 88 chr6 124896022 124896227 -24620810 - B3 SINE B2 0 216 11 1 1537 484 184 120 1 chr6 124896228 124896334 -24620703 - PB1D10 SINE Alu 0 117 3 1 1537 606 294 50 11 chr6 124896429 124896606 -24620431 - MER58A DNA MER1_type 0 224 41 1 1537 592 208 79 162 chr6 124896606 124896687 -24620350 + B4 SINE B4 1 78 -214 1 1537 1360 53 0 108 chr6 124896687 124896899 -24620138 - B2_Mm1a SINE B2 -3 190 2 1 1537 592 208 79 162 chr6 124896899 124897058 -24619979 + B4 SINE B4 79 221 -71 1 1537 885 109 29 14 chr6 124896923 124897063 -24619974 + B1_Mm SINE Alu 6 147 0 1 1537 234 0 0 0 chr6 124897063 124897089 -24619948 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1537 617 233 62 173 chr6 124897089 124897297 -24619740 + B4 SINE B4 81 265 -27 1 1537 552 15 0 0 chr6 124897302 124897367 -24619670 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1537 26 0 0 0 chr6 124897614 124897640 -24619397 + AT_rich Low_complexity Low_complexity 1 26 0 1 1537 301 250 78 13 chr6 124897644 124897721 -24619316 + ID4_ SINE ID 2 83 0 1 1537 1194 156 9 28 chr6 124897939 124898156 -24618881 - B3 SINE B2 0 216 4 1 1537 306 267 136 43 chr6 124898160 124898348 -24618689 - L1MEf LINE L1 -4568 2065 1857 1 1537 618 154 154 0 chr6 124898361 124898465 -24618572 + B1_Mur3 SINE Alu 2 121 -28 1 1537 295 239 237 42 chr6 124898507 124898625 -24618412 + B1_Mur2 SINE Alu 2 142 -7 1 1537 1094 15 8 0 chr6 124898626 124898758 -24618279 + (GAA)n Simple_repeat Simple_repeat 3 135 0 1 1537 537 249 115 63 chr6 124898842 124898970 -24618067 - L1MEf LINE L1 -4901 1732 1612 1 1537 1487 53 32 0 chr6 124898970 124899157 -24617880 - B2_Mm2 SINE B2 -2 193 1 1 1537 537 249 115 63 chr6 124899157 124899392 -24617645 - L1MEf LINE L1 -5022 1611 1350 1 1537 481 266 42 0 chr6 124899399 124899542 -24617495 - B1F2 SINE Alu 0 149 1 1 1537 703 177 0 0 chr6 124899581 124899694 -24617343 - B1_Mur2 SINE Alu 0 149 37 1 1537 239 197 26 66 chr6 124899629 124899705 -24617332 - RLTR25B LTR ERVK -529 499 427 1 1537 238 208 21 0 chr6 124899712 124899760 -24617277 + (CATA)n Simple_repeat Simple_repeat 4 52 0 1 1537 219 217 16 48 chr6 124899760 124899823 -24617214 + B1F1 SINE Alu 89 149 0 1 1537 948 94 47 0 chr6 124899838 124899966 -24617071 + B1_Mus2 SINE Alu 1 134 -13 1 1537 315 0 0 0 chr6 124899968 124900003 -24617034 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1537 265 71 24 0 chr6 124900013 124900055 -24616982 + B2_Mm1t SINE B2 1 43 -150 1 1537 207 0 0 0 chr6 124900055 124900078 -24616959 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1537 1197 35 14 0 chr6 124900085 124900230 -24616807 + B1_Mus2 SINE Alu 1 147 0 1 1537 962 124 37 18 chr6 124900258 124900392 -24616645 + B2_Mm1a SINE B2 27 161 -32 1 1537 438 20 0 0 chr6 124900392 124900443 -24616594 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1 1537 962 124 37 18 chr6 124900443 124900472 -24616565 + B2_Mm1a SINE B2 162 192 -1 1 1537 1507 74 129 22 chr6 124900868 124901184 -24615853 + LTRIS2 LTR ERV1 1 334 -178 1 1537 213 39 0 0 chr6 124901184 124901210 -24615827 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1 1537 1309 117 14 5 chr6 124901830 124902037 -24615000 + LTRIS2 LTR ERV1 304 512 0 1 1537 1218 41 14 0 chr6 124902109 124902254 -24614783 - B1_Mus2 SINE Alu 0 147 1 1 1537 770 167 20 59 chr6 124902260 124902413 -24614624 - B1_Mus1 SINE Alu -1 147 1 1 1537 572 286 108 55 chr6 124902976 124903474 -24613563 - RMER13A LTR ERVK -228 680 113 1 1537 1969 127 36 9 chr6 124903606 124903941 -24613096 - RMER10A LTR ERVL -97 345 2 1 1537 478 179 103 9 chr6 124903941 124904029 -24613008 - B3A SINE B2 -100 98 1 1 1537 1606 157 53 56 chr6 124904066 124904404 -24612633 + ORR1A1 LTR MaLR 2 338 -8 1 1537 2332 151 35 31 chr6 124904503 124904954 -24612083 + RLTR11B LTR ERVK 1 453 0 1 1537 1287 40 0 0 chr6 124904981 124905129 -24611908 + B1_Mus1 SINE Alu 1 148 0 1 1537 418 168 391 27 chr6 124905725 124905835 -24611202 - B1_Mur4 SINE Alu 0 150 1 1 1537 244 214 0 51 chr6 124906010 124906069 -24610968 + MLT1F2 LTR MaLR 377 432 -128 1 1537 584 259 61 0 chr6 124906120 124906251 -24610786 - B1F1 SINE Alu -8 141 3 1 1537 631 248 0 8 chr6 124906490 124906612 -24610425 - B3A SINE B2 -71 127 7 1 1537 252 295 16 0 chr6 124906653 124906714 -24610323 + B1_Mur1 SINE Alu 87 148 -1 1 1537 232 214 17 67 chr6 124906752 124906812 -24610225 + B4A SINE B4 93 149 -143 1 1537 981 162 54 25 chr6 124906971 124907174 -24609863 + B3 SINE B2 5 213 -3 1 1537 1182 121 23 0 chr6 124907177 124907351 -24609686 + B2_Mm1t SINE B2 2 179 -14 1 1537 1103 101 0 0 chr6 124907369 124907518 -24609519 + B1_Mur3 SINE Alu 1 149 0 1 1537 351 224 109 30 chr6 124907865 124907966 -24609071 + PB1D10 SINE Alu 1 109 -8 1 1537 669 217 29 7 chr6 124908076 124908215 -24608822 + B1_Mus2 SINE Alu 1 142 -5 1 1537 327 49 0 0 chr6 124908215 124908256 -24608781 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 1 1537 25 0 0 0 chr6 124908898 124908923 -24608114 + AT_rich Low_complexity Low_complexity 1 25 0 1 1537 1177 48 14 0 chr6 124910396 124910541 -24606496 - B1_Mus2 SINE Alu 0 147 1 1 1537 312 223 68 87 chr6 124910766 124910869 -24606168 + PB1D7 SINE Alu 1 101 -19 1 192 690 219 29 0 chr6 124911595 124911732 -24605305 - B1F SINE Alu -8 141 1 1 1538 251 295 63 13 chr6 124913720 124913799 -24603238 - PB1D10 SINE Alu -7 110 28 1 1538 755 146 20 0 chr6 124913908 124914030 -24603007 - B1_Mus1 SINE Alu 0 148 22 1 1538 780 172 14 14 chr6 124914049 124914196 -24602841 + B1_Mus2 SINE Alu 1 147 0 1 1538 746 123 0 0 chr6 124914299 124914405 -24602632 + U6 snRNA snRNA 2 107 0 1 1538 356 223 51 41 chr6 124914428 124914526 -24602511 + B1F2 SINE Alu 42 140 -9 1 1538 485 275 7 61 chr6 124915921 124916068 -24600969 + ID_B1 SINE B4 86 224 0 1 1538 494 202 0 31 chr6 124916294 124916391 -24600646 + PB1D7 SINE Alu 20 113 -7 1 1538 268 237 28 139 chr6 124916312 124916420 -24600617 + MT2B2 LTR ERVL 195 290 -294 1 1538 285 263 37 92 chr6 124916522 124916631 -24600406 + PB1D10 SINE Alu 1 105 -22 1 1538 326 254 31 12 chr6 124916678 124916773 -24600264 + PB1D10 SINE Alu 4 106 -44 1 1538 858 132 30 48 chr6 124916818 124916985 -24600052 + B2_Mm2 SINE B2 2 165 -30 1 1538 785 223 70 110 chr6 124917055 124917215 -24599822 - MTD LTR MaLR -140 279 110 1 1538 544 241 188 0 chr6 124917215 124917385 -24599652 + B3 SINE B2 2 203 -13 1 1538 785 223 70 110 chr6 124917385 124917496 -24599541 - MTD LTR MaLR -310 109 19 1 1538 678 226 0 52 chr6 124917509 124917663 -24599374 - B1_Mur2 SINE Alu 0 149 4 1 1538 340 296 200 18 chr6 124917707 124917872 -24599165 - L2 LINE L2 -667 2752 2558 1 1538 898 186 67 6 chr6 124917874 124918052 -24598985 + B3 SINE B2 1 189 -27 1 1538 573 215 85 0 chr6 124918100 124918230 -24598807 - B1_Mur3 SINE Alu -8 141 1 1 1538 775 159 15 29 chr6 124918254 124918390 -24598647 + B1_Mur3 SINE Alu 1 134 -15 1 1538 302 207 0 49 chr6 124918461 124918522 -24598515 + PB1D10 SINE Alu 55 112 -5 1 1538 370 265 118 13 chr6 124918660 124918813 -24598224 + L1M2 LINE L1 3592 3760 -2383 1 1538 279 387 0 0 chr6 124918851 124918962 -24598075 + PB1D7 SINE Alu 1 111 -9 1 1538 555 259 101 13 chr6 124919007 124919156 -24597881 - RSINE1 SINE B4 -2 163 2 1 1538 354 266 155 45 chr6 124919297 124919477 -24597560 + L1ME3B LINE L1 4733 4913 -964 1 1538 444 283 87 27 chr6 124920341 124920526 -24596511 + ID_B1 SINE B4 8 203 -21 1 1538 582 264 56 101 chr6 124920614 124920901 -24596136 + B4 SINE B4 1 274 -18 1 1538 279 0 0 0 chr6 124920989 124921020 -24596017 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1538 477 266 51 120 chr6 124921073 124921390 -24595647 + L1ME3B LINE L1 5258 5561 -612 1 1538 227 250 176 12 chr6 124921390 124921475 -24595562 - PB1D7 SINE Alu -19 101 3 1 1538 477 263 50 121 chr6 124921475 124921529 -24595508 + L1ME3B LINE L1 5562 5605 -635 1 1538 300 252 128 29 chr6 124921547 124921649 -24595388 + L1ME3B LINE L1 5895 6006 -234 1 1538 966 129 0 7 chr6 124921653 124921801 -24595236 + B1_Mur4 SINE Alu 4 150 0 1 1538 216 158 0 0 chr6 124921801 124921839 -24595198 + GA-rich Low_complexity Low_complexity 1 38 0 1 1538 859 107 22 22 chr6 124921930 124922064 -24594973 - B2_Mm2 SINE B2 -11 184 51 1 1538 636 261 44 83 chr6 124922322 124922527 -24594510 + B3A SINE B2 2 198 0 1 1538 1224 48 0 0 chr6 124922532 124922678 -24594359 + B1_Mus2 SINE Alu 2 147 0 1 1538 297 0 0 0 chr6 124922748 124922781 -24594256 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1538 1464 56 0 6 chr6 124922781 124922961 -24594076 - B2_Mm2 SINE B2 -15 180 2 1 1538 590 277 15 0 chr6 124923004 124923141 -24593896 - ID_B1 SINE B4 -1 223 85 1 1538 2874 116 22 28 chr6 124923165 124923627 -24593410 + RMER6B LTR ERVK 1 459 -2 1 1538 705 243 0 26 chr6 124923678 124923830 -24593207 + B1_Mur1 SINE Alu 2 149 0 1 1538 316 308 100 25 chr6 124923887 124924087 -24592950 + L1M5 LINE L1 4025 4239 -1907 1 1538 2838 33 12 3 chr6 124924087 124924421 -24592616 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1538 56962 20 14 7 chr6 124924421 124930851 -24586186 + IAPEz-int LTR ERVK 8 6481 0 1 1538 2926 33 0 3 chr6 124930851 124931189 -24585848 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1538 456 280 109 70 chr6 124931205 124931221 -24585816 + L1M5 LINE L1 4233 4248 -1898 1 1538 1355 61 44 16 chr6 124931221 124931404 -24585633 + B2_Mm2 SINE B2 1 188 -7 1 1538 456 280 109 70 chr6 124931404 124931644 -24585393 + L1M5 LINE L1 4249 4499 -1647 1 1538 723 246 68 37 chr6 124931648 124931838 -24585199 + B3A SINE B2 3 198 0 1 1538 711 274 64 0 chr6 124931924 124932128 -24584909 + ID_B1 SINE B4 1 217 -7 1 1538 913 249 17 34 chr6 124932139 124932372 -24584665 + B4A SINE B4 1 229 -63 1 1538 781 146 71 28 chr6 124932373 124932514 -24584523 + B1_Mur4 SINE Alu 1 147 -3 1 1538 360 0 0 0 chr6 124932514 124932554 -24584483 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1538 419 222 15 45 chr6 124932562 124932689 -24584348 + B1_Mus1 SINE Alu 2 116 -4 1 1538 530 246 125 16 chr6 124932832 124932960 -24584077 + ID_B1 SINE B4 82 223 -1 1 1538 581 198 0 0 chr6 124933017 124933118 -24583919 - PB1D9 SINE Alu -10 110 10 1 1538 417 139 200 0 chr6 124933165 124933263 -24583774 + B1_Mur2 SINE Alu 1 123 -26 1 1538 212 233 0 32 chr6 124933276 124933338 -24583699 + (CATA)n Simple_repeat Simple_repeat 4 63 0 1 1538 232 211 39 0 chr6 124933388 124933440 -24583597 + L1MB3 LINE L1 5998 6051 -120 1 1538 215 350 17 0 chr6 124933448 124933506 -24583531 + PB1D10 SINE Alu 17 75 -42 1 1538 718 284 23 55 chr6 124933506 124933726 -24583311 + B3 SINE B2 1 213 -3 1 1538 792 189 85 11 chr6 124933744 124933921 -24583116 - B3 SINE B2 0 216 27 1 1538 799 152 0 0 chr6 124933923 124934041 -24582996 - B1_Mus1 SINE Alu 0 148 31 1 1538 200 34 0 33 chr6 124934103 124934133 -24582904 + (TTTTTG)n Simple_repeat Simple_repeat 6 34 0 1 1538 1204 68 0 0 chr6 124934133 124934280 -24582757 - B1_Mus1 SINE Alu 0 148 2 1 1538 551 234 0 0 chr6 124934314 124934425 -24582612 - PB1D10 SINE Alu -6 111 1 1 1538 390 270 214 0 chr6 124934425 124934437 -24582600 - ID_B1 SINE B4 -3 218 69 1 1538 581 191 9 19 chr6 124934627 124934734 -24582303 - B4A SINE B4 0 292 187 1 1538 222 338 25 0 chr6 124934760 124934840 -24582197 - B4A SINE B4 -191 101 20 1 1538 590 296 37 0 chr6 124934847 124934982 -24582055 - ID_B1 SINE B4 -67 157 18 1 1538 311 176 88 0 chr6 124934986 124935054 -24581983 + L1MB3 LINE L1 6094 6167 -16 1 1538 261 111 0 0 chr6 124935179 124935215 -24581822 - ORR1B1 LTR MaLR -357 37 2 1 1538 896 175 7 0 chr6 124935263 124935406 -24581631 - B1_Mur3 SINE Alu -5 144 1 1 1538 1582 37 27 0 chr6 124935461 124935648 -24581389 + B2_Mm1t SINE B2 1 192 -1 1 1538 592 132 246 0 chr6 124935916 124936030 -24581007 + B1_Mm SINE Alu 6 147 0 1 1538 2354 89 0 0 chr6 124936031 124936334 -24580703 + L1_Mm LINE L1 5496 5798 -85 1 1538 919 126 201 45 chr6 124936334 124936579 -24580458 + B2_Mm1a SINE B2 2 210 -6 1 1538 235 337 0 95 chr6 124936555 124936650 -24580387 + RLTR25B LTR ERVK 413 498 -530 1 1538 719 46 0 0 chr6 124936603 124936690 -24580347 + B1_Mm SINE Alu 52 138 -9 1 1538 350 42 21 0 chr6 124936690 124936738 -24580299 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1538 5995 92 22 15 chr6 124936741 124937594 -24579443 + Lx LINE L1 5790 6648 -6 1 1538 330 26 0 0 chr6 124937595 124937634 -24579403 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1538 948 117 0 0 chr6 124937648 124937793 -24579244 + (GAAA)n Simple_repeat Simple_repeat 1 145 0 1 1538 904 175 25 41 chr6 124937804 124938001 -24579036 + B2_Mm2 SINE B2 2 195 0 1 1538 411 214 56 46 chr6 124938281 124938389 -24578648 + B3 SINE B2 3 111 -105 1 1538 626 211 0 0 chr6 124938388 124938502 -24578535 - B3 SINE B2 -102 114 1 1 1538 766 268 74 101 chr6 124938703 124939081 -24577956 + L1M2 LINE L1 4438 4805 -1338 1 1538 978 34 0 0 chr6 124939124 124939242 -24577795 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 1 1538 353 123 0 55 chr6 124939250 124939318 -24577719 - B2_Mm2 SINE B2 -107 109 47 1 1538 1204 125 11 0 chr6 124939383 124939559 -24577478 - B2_Mm1t SINE B2 -14 179 2 1 1538 1456 65 27 0 chr6 124939567 124939751 -24577286 - B2_Mm1a SINE B2 -4 189 1 1 1538 319 99 159 16 chr6 124939867 124940367 -24576670 + (CAGG)n Simple_repeat Simple_repeat 1 571 0 1 1538 764 187 140 0 chr6 124940477 124940648 -24576389 + B3 SINE B2 1 195 -21 1 1538 3152 214 43 25 chr6 124940662 124941343 -24575694 - Lx6 LINE L1 -12 7448 6756 1 1538 641 313 35 15 chr6 124941416 124941614 -24575423 + B4A SINE B4 2 203 -89 1 1538 338 222 0 53 chr6 124941733 124941809 -24575228 + RSINE1 SINE B4 7 78 -87 1 1538 1122 320 12 19 chr6 124941809 124942327 -24574710 + Lx7 LINE L1 5404 5925 -1771 1 1538 428 264 7 27 chr6 124942587 124942735 -24574302 + B1_Mur4 SINE Alu 5 149 -1 1 1538 315 0 0 0 chr6 124943075 124943110 -24573927 + (CAGA)n Simple_repeat Simple_repeat 1 35 0 1 1538 647 225 36 0 chr6 124943144 124943282 -24573755 + RSINE1 SINE B4 2 144 -21 1 1538 291 85 0 0 chr6 124943290 124943337 -24573700 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1538 255 159 23 0 chr6 124943373 124943429 -24573608 + PB1D10 SINE Alu 53 112 -37 1 1538 245 278 0 0 chr6 124943469 124943523 -24573514 - tRNA-Ala-GCY_ tRNA tRNA -20 55 2 1 1538 327 286 66 25 chr6 124943545 124943667 -24573370 + L2a LINE L2 3290 3416 -10 1 1538 686 255 14 26 chr6 124943670 124943834 -24573203 + ID_B1 SINE B4 84 244 -48 1 1538 440 248 90 55 chr6 124944754 124944899 -24572138 - RSINE1 SINE B4 -13 152 3 1 1538 1065 316 151 20 chr6 124944901 124945544 -24571493 - L2 LINE L2 -570 2849 2123 1 1538 1438 50 6 17 chr6 124945621 124945802 -24571235 - B2_Mm1a SINE B2 -14 179 1 1 1538 629 212 121 0 chr6 124945828 124945960 -24571077 - RSINE1 SINE B4 -15 150 3 1 1538 200 230 99 91 chr6 124945961 124946120 -24570917 - L2a LINE L2 -264 3162 3002 1 1538 240 154 0 0 chr6 124946720 124946772 -24570265 + (CCGAG)n Simple_repeat Simple_repeat 5 56 0 1 1538 234 0 0 0 chr6 124946777 124946803 -24570234 + (CCG)n Simple_repeat Simple_repeat 2 27 0 1 1538 24 0 0 0 chr6 124946803 124946827 -24570210 + GC_rich Low_complexity Low_complexity 1 24 0 1 1538 274 357 90 80 chr6 124949840 124950110 -24566927 - L2c LINE L2 -20 3367 3096 1 1538 1393 49 49 5 chr6 124950110 124950294 -24566743 + B2_Mm1a SINE B2 1 192 -1 1 1538 274 357 90 80 chr6 124950294 124950334 -24566703 - L2c LINE L2 -292 3095 3055 1 1538 209 291 0 52 chr6 124952886 124953002 -24564035 + CT-rich Low_complexity Low_complexity 4 113 0 1 1538 352 260 69 20 chr6 124953487 124953589 -24563448 - PB1D7 SINE Alu -8 112 6 1 1538 498 33 0 0 chr6 124954132 124954192 -24562845 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1538 357 209 67 69 chr6 124955609 124955711 -24561326 - PB1D10 SINE Alu -2 115 17 1 1538 404 339 18 0 chr6 124955818 124955930 -24561107 + ID_B1 SINE B4 83 196 -28 1 1538 853 289 28 40 chr6 124955954 124956203 -24560834 + B4A SINE B4 8 253 -39 1 1538 477 0 0 0 chr6 124956214 124956267 -24560770 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1538 368 268 112 35 chr6 124956268 124956384 -24560653 + ID_B1 SINE B4 78 202 -22 1 1538 525 199 0 16 chr6 124956344 124956473 -24560564 + B1_Mur1 SINE Alu 25 148 -1 1 1538 202 250 71 48 chr6 124956488 124956572 -24560465 + MIRc SINE MIR 70 155 -113 1 1538 1034 80 72 0 chr6 124956913 124957051 -24559986 + B1_Mus1 SINE Alu 1 148 0 1 1538 39 0 0 0 chr6 124957053 124957092 -24559945 + AT_rich Low_complexity Low_complexity 1 39 0 1 1538 626 209 0 14 chr6 124957278 124957419 -24559618 + RMER6B LTR ERVK 100 238 -223 1 1538 306 310 0 35 chr6 124957499 124957586 -24559451 + PB1D10 SINE Alu 27 110 -7 1 1538 616 136 0 91 chr6 124957605 124957726 -24559311 + B1_Mur3 SINE Alu 39 148 -1 1 1538 244 354 0 10 chr6 124957817 124957914 -24559123 - L2c LINE L2 -1 3386 3291 1 1538 1101 82 34 0 chr6 124958273 124958420 -24558617 + B2_Mm2 SINE B2 2 153 -42 1 1538 183 42 0 0 chr6 124958420 124958444 -24558593 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1538 1054 31 77 0 chr6 124958448 124958578 -24558459 + B1_Mm SINE Alu 2 141 -6 1 1538 264 217 122 61 chr6 124958602 124958700 -24558337 + B3 SINE B2 6 109 -107 1 1538 264 245 10 41 chr6 124959458 124959556 -24557481 + (CCG)n Simple_repeat Simple_repeat 2 96 0 1 1538 460 277 7 81 chr6 124961049 124961198 -24555839 - B1F SINE Alu 0 149 12 1 1538 654 187 78 72 chr6 124961248 124961415 -24555622 + B2_Mm2 SINE B2 19 186 -9 1 1538 1046 276 48 29 chr6 124961428 124961701 -24555336 + B4 SINE B4 2 279 -13 1 1538 413 223 183 10 chr6 124961938 124962042 -24554995 - RSINE1 SINE B4 -39 126 5 1 1538 326 258 74 21 chr6 124962060 124962155 -24554882 - PB1D10 SINE Alu -7 110 11 1 1538 640 217 80 31 chr6 124962074 124962236 -24554801 - ID_B1 SINE B4 -50 174 5 1 1538 229 209 0 0 chr6 124962487 124962530 -24554507 - ID_B1 SINE B4 -1 223 181 1 1538 363 345 122 0 chr6 124962568 124962707 -24554330 - RSINE1 SINE B4 -7 158 3 1 1538 328 246 0 42 chr6 124962707 124962768 -24554269 - B1F1 SINE Alu -90 59 2 1 1538 685 235 47 61 chr6 124962770 124962983 -24554054 - B3 SINE B2 -4 212 3 1 1538 516 240 9 9 chr6 124963012 124963117 -24553920 - PB1D9 SINE Alu -7 113 9 1 1538 208 179 0 51 chr6 124963404 124963445 -24553592 + T-rich Low_complexity Low_complexity 17 56 0 1 1538 1159 62 0 14 chr6 124963445 124963593 -24553444 - B1_Mm SINE Alu 0 147 2 1 1538 208 179 0 51 chr6 124963593 124963610 -24553427 + T-rich Low_complexity Low_complexity 1 16 0 1 1538 498 344 19 26 chr6 124963622 124963777 -24553260 - RSINE1 SINE B4 -4 161 8 1 1538 388 291 110 0 chr6 124963787 124963914 -24553123 - B1F SINE Alu -7 142 2 1 1538 417 241 78 35 chr6 124964028 124964170 -24552867 - B1F2 SINE Alu 0 149 2 1 1538 27 0 0 0 chr6 124964179 124964206 -24552831 + AT_rich Low_complexity Low_complexity 1 27 0 1 1538 309 313 12 0 chr6 124964259 124964342 -24552695 - RSINE1 SINE B4 -66 99 16 1 1538 293 194 0 46 chr6 124964359 124964424 -24552613 - B3 SINE B2 -8 208 147 1 1538 369 190 24 48 chr6 124964560 124964643 -24552394 - ID_B1 SINE B4 -1 223 143 1 1538 202 208 0 20 chr6 124964655 124964704 -24552333 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1538 780 236 30 45 chr6 124964705 124964905 -24552132 - B3A SINE B2 -1 197 1 1 1538 874 193 11 0 chr6 124964954 124965130 -24551907 - MERVL_2A-int LTR ERVL -1041 4720 4543 1 1538 954 161 12 0 chr6 124965169 124965337 -24551700 - MERVL_2A-int LTR ERVL -1646 4115 3946 1 1538 2457 75 22 0 chr6 124965340 124965660 -24551377 - ORR1A2 LTR MaLR 0 327 1 1 1538 10434 121 63 87 chr6 124965660 124967672 -24549365 - ORR1A2-int LTR MaLR 0 1963 1 1 1538 1915 71 76 69 chr6 124967676 124967993 -24549044 - ORR1A2 LTR MaLR -8 319 1 1 1538 1633 171 61 18 chr6 124967993 124968320 -24548717 - MERVL_2A-int LTR ERVL -1813 3948 3608 1 1538 1389 86 32 0 chr6 124968354 124968541 -24548496 - B2_Mm2 SINE B2 -1 194 2 1 1538 683 278 0 41 chr6 124968566 124968735 -24548302 - RSINE1 SINE B4 -2 163 2 1 1538 354 248 120 64 chr6 124968741 124968866 -24548171 - ID_B1 SINE B4 -2 222 91 1 1538 677 149 37 0 chr6 124968995 124969102 -24547935 + PB1D9 SINE Alu 9 119 -1 1 1538 726 251 112 0 chr6 124969118 124969297 -24547740 + B3 SINE B2 1 199 -17 1 1538 458 319 52 66 chr6 124969466 124969629 -24547408 - B4 SINE B4 -1 291 126 1 1538 378 0 0 0 chr6 124969629 124969671 -24547366 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1538 458 319 52 66 chr6 124969671 124969796 -24547241 - B4 SINE B4 -167 125 7 1 1538 214 299 45 0 chr6 124969929 124969996 -24547041 - ID_B1 SINE B4 -91 133 64 1 1538 534 133 0 53 chr6 124970187 124970198 -24546839 - B1_Mus2 SINE Alu -1 146 136 1 1538 1183 68 0 0 chr6 124970198 124970345 -24546692 - B1_Mus1 SINE Alu -1 147 1 1 1538 534 133 0 53 chr6 124970345 124970428 -24546609 - B1_Mus2 SINE Alu -12 135 57 1 1538 324 312 0 12 chr6 124970851 124970932 -24546105 + RSINE1 SINE B4 86 165 0 1 1538 255 253 48 60 chr6 124970953 124971037 -24546000 + MER2B DNA MER2_type 253 335 -1 1 1538 627 310 51 6 chr6 124971189 124971345 -24545692 + RSINE1 SINE B4 3 165 0 1 1538 257 306 28 0 chr6 124971388 124971460 -24545577 + PB1D7 SINE Alu 37 110 -10 1 1538 860 70 137 15 chr6 124971484 124971615 -24545422 + B1_Mus1 SINE Alu 1 147 -1 1 1538 712 290 5 15 chr6 124971772 124971965 -24545072 - B3A SINE B2 -10 185 1 1 1538 472 265 143 49 chr6 124971980 124972246 -24544791 - B4A SINE B4 0 292 2 1 1538 202 135 58 0 chr6 124972252 124972304 -24544733 + T-rich Low_complexity Low_complexity 2 56 0 1 1538 873 173 14 0 chr6 124972329 124972468 -24544569 - B1_Mus2 SINE Alu -6 141 1 1 1538 287 266 17 29 chr6 124972600 124972637 -24544400 - ID_B1 SINE B4 -117 175 84 1 1538 341 167 0 0 chr6 124972637 124972685 -24544352 - PB1D9 SINE Alu -71 49 2 1 1538 480 239 43 2 chr6 124972719 124972849 -24544188 + B3A SINE B2 27 174 -24 1 1538 436 288 25 17 chr6 124974385 124974505 -24542532 - MIRm SINE MIR 0 276 156 1 1538 180 296 0 18 chr6 124975836 124975869 -24541168 - MIRb SINE MIR -98 170 139 1 1538 692 237 74 20 chr6 124975869 124976071 -24540966 + MIRb SINE MIR 3 215 -53 1 1538 225 94 0 0 chr6 124977378 124977410 -24539627 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1538 274 224 112 50 chr6 124977504 124977584 -24539453 + PB1D10 SINE Alu 1 85 -32 1 1538 204 171 0 47 chr6 124977687 124977730 -24539307 + C-rich Low_complexity Low_complexity 3 43 0 1 1538 228 234 21 0 chr6 124978216 124978263 -24538774 - L3 LINE CR1 -91 4398 4351 1 1538 407 257 34 42 chr6 124978528 124978646 -24538391 - PB1D10 SINE Alu 0 117 1 1 1538 375 250 12 12 chr6 124978851 124978932 -24538105 + ID4 SINE ID 1 81 -2 1 1538 1284 146 14 14 chr6 124980157 124980373 -24536664 + URR1B DNA MER1_type 1 216 -9 1 1538 209 345 12 12 chr6 124980427 124980512 -24536525 - L2b LINE L2 0 3375 3291 1 1538 453 229 28 37 chr6 124980513 124980622 -24536415 + PB1D10 SINE Alu 2 109 -8 1 1538 198 277 160 0 chr6 124983166 124983260 -24533777 + MIRm SINE MIR 40 148 -128 1 1538 477 206 43 55 chr6 124983455 124983600 -24533437 + B1F SINE Alu 1 149 0 1 1538 868 309 30 23 chr6 124983602 124983867 -24533170 + B4 SINE B4 4 270 -22 1 1538 403 298 147 14 chr6 124983907 124984050 -24532987 + RSINE1 SINE B4 2 163 -2 1 1538 387 0 0 0 chr6 124984073 124984116 -24532921 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1538 315 273 25 12 chr6 124984134 124984235 -24532802 + ID4_ SINE ID 3 104 -48 1 1538 285 284 50 40 chr6 124984351 124984450 -24532587 + B3A SINE B2 66 165 -33 1 1538 422 143 179 0 chr6 124984505 124984589 -24532448 - B1_Mur2 SINE Alu 0 149 51 1 1538 236 48 0 67 chr6 124984599 124984627 -24532410 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1538 697 53 298 0 chr6 124984627 124984741 -24532296 + B1_Mus1 SINE Alu 1 148 0 1 1538 236 48 0 67 chr6 124984741 124984757 -24532280 + (A)n Simple_repeat Simple_repeat 1 16 0 1 1538 489 250 26 9 chr6 124984981 124985094 -24531943 - PB1D10 SINE Alu 0 117 3 1 1538 250 243 85 62 chr6 124985017 124985114 -24531923 - B4A SINE B4 -125 167 66 1 1538 219 36 0 0 chr6 124985162 124985190 -24531847 + (CGAG)n Simple_repeat Simple_repeat 2 29 0 1 1538 347 269 231 4 chr6 124985209 124985444 -24531593 - B4A SINE B4 -3 289 2 1 1538 399 336 0 0 chr6 124986409 124986516 -24530521 + (TTAGGC)n Simple_repeat Simple_repeat 4 110 0 1 1538 198 0 0 0 chr6 124986527 124986549 -24530488 + (CAG)n Simple_repeat Simple_repeat 1 22 0 1 1538 276 53 0 0 chr6 124987552 124987590 -24529447 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1538 228 268 71 35 chr6 124988157 124988242 -24528795 + MT2B LTR ERVL 169 256 -345 1 1538 451 196 154 27 chr6 124988166 124988276 -24528761 + B1_Mus2 SINE Alu 12 135 -12 1 1538 420 173 49 0 chr6 124989268 124989349 -24527688 + PB1D9 SINE Alu 16 100 -20 1 1538 906 78 15 15 chr6 124990663 124990793 -24526244 + B1_Mus1 SINE Alu 18 147 -1 1 1538 667 227 6 43 chr6 124991023 124991042 -24525995 + ID_B1 SINE B4 70 224 0 1 1538 1061 106 0 0 chr6 124991042 124991184 -24525853 + B1_Mus2 SINE Alu 6 147 0 1 1538 324 225 77 12 chr6 124991367 124991467 -24525570 - PB1D10 SINE Alu 0 117 13 1 1538 290 314 135 28 chr6 124991494 124991523 -24525514 + ID_B1 SINE B4 56 211 -13 1 1538 548 207 116 9 chr6 124991523 124991635 -24525402 + B1_Mus1 SINE Alu 12 135 -13 1 1538 1134 55 14 14 chr6 124991969 124992116 -24524921 - B1_Mus2 SINE Alu 0 147 1 1 1538 773 211 59 46 chr6 124992596 124992815 -24524222 + ID_B1 SINE B4 3 224 0 1 1538 227 200 0 0 chr6 124992815 124992865 -24524172 + A-rich Low_complexity Low_complexity 1 50 0 1 1538 1353 87 11 0 chr6 124992927 124993112 -24523925 - B2_Mm1t SINE B2 -6 187 1 1 1538 24 32 0 0 chr6 124993152 124993183 -24523854 + AT_rich Low_complexity Low_complexity 1 31 0 1 1538 1439 39 0 3 chr6 124993183 124993372 -24523665 - B2_Mm1a SINE B2 -11 184 2 1 1538 624 282 40 0 chr6 124993429 124993603 -24523434 - B3A SINE B2 -17 181 1 1 1538 478 177 0 0 chr6 124993777 124993856 -24523181 + ID4 SINE ID 3 81 -2 1 1538 210 118 0 0 chr6 124994141 124994175 -24522862 + (TATG)n Simple_repeat Simple_repeat 4 37 0 1 1538 1108 182 11 22 chr6 124994175 124994360 -24522677 - B3 SINE B2 -28 188 6 1 1538 834 225 19 6 chr6 124994464 124994625 -24522412 + RSINE1 SINE B4 3 165 0 1 1538 252 204 0 210 chr6 124994833 124994957 -24522080 + RLTR25B LTR ERVK 423 520 -508 1 1538 559 180 0 2 chr6 124994869 124994977 -24522060 + B1_Mur1 SINE Alu 41 146 -1 1 1538 332 232 0 99 chr6 124994972 124995063 -24521974 + ID_B1 SINE B4 143 224 0 1 1538 1711 26 0 0 chr6 124995432 124995624 -24521413 - B2_Mm1t SINE B2 0 193 2 1 1538 632 245 29 7 chr6 124996068 124996208 -24520829 + B1F1 SINE Alu 1 143 -6 1 1538 253 200 0 0 chr6 124996292 124996347 -24520690 + PB1D10 SINE Alu 30 84 -33 1 1538 234 295 0 32 chr6 124996632 124996695 -24520342 + B4A SINE B4 85 145 -147 1 1538 432 235 19 29 chr6 124996648 124996753 -24520284 + PB1D10 SINE Alu 14 117 0 1 1538 270 0 0 0 chr6 125000302 125000332 -24516705 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1538 537 189 174 0 chr6 125001403 125001535 -24515502 + B3 SINE B2 62 216 0 2 1538 1098 64 43 0 chr6 125001634 125001774 -24515263 - B1_Mm SINE Alu -1 146 1 3 1538 390 42 0 0 chr6 125002013 125002061 -24514976 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1538 403 267 0 82 chr6 125002066 125002124 -24514913 - B4A SINE B4 -6 286 230 5 1538 591 194 146 8 chr6 125002124 125002254 -24514783 - B1_Mur1 SINE Alu -1 148 1 6 1538 403 267 0 82 chr6 125002254 125002305 -24514732 - B4A SINE B4 -63 229 186 5 1538 1036 152 168 5 chr6 125002305 125002490 -24514547 + B3 SINE B2 2 216 0 7 1538 1108 147 0 64 chr6 125002530 125002734 -24514303 + B2_Mm2 SINE B2 1 191 -4 8 1538 427 245 75 0 chr6 125002743 125002840 -24514197 + PB1D9 SINE Alu 2 106 -14 9 1538 423 0 0 0 chr6 125002840 125002887 -24514150 + (TAA)n Simple_repeat Simple_repeat 1 47 0 1 1538 377 309 37 134 chr6 125002906 125003015 -24514022 - B4 SINE B4 -123 169 81 5 1538 1203 54 0 0 chr6 125003015 125003162 -24513875 - B1_Mus2 SINE Alu 0 147 1 1 1538 377 309 37 134 chr6 125003162 125003239 -24513798 - B4 SINE B4 -212 80 1 5 1538 395 273 35 26 chr6 125003292 125003405 -24513632 - ID_B1 SINE B4 -5 219 106 1 1538 189 175 0 0 chr6 125003678 125003718 -24513319 + GA-rich Low_complexity Low_complexity 3 42 0 1 1538 838 197 9 81 chr6 125004241 125004286 -24512751 - B3A SINE B2 -1 197 167 1 1538 279 0 0 0 chr6 125004286 125004317 -24512720 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1538 838 197 9 81 chr6 125004317 125004481 -24512556 - B3A SINE B2 -32 166 3 1 1538 207 0 0 0 chr6 125005234 125005257 -24511780 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1538 414 208 26 0 chr6 125005267 125005344 -24511693 + ID2 SINE ID 3 81 -2 1 1538 1412 278 46 77 chr6 125005363 125005866 -24511171 - MT2A LTR ERVL -31 570 5 1 1538 3574 237 108 89 chr6 125005867 125006452 -24510585 - MERVL_2A-int LTR ERVL -4 5757 5190 1 1538 1266 135 120 0 chr6 125006452 125006652 -24510385 + URR1A DNA MER1_type 3 226 0 1 1538 3574 237 108 89 chr6 125006652 125007098 -24509939 - MERVL_2A-int LTR ERVL -572 5189 4711 1 1538 1146 82 0 7 chr6 125007098 125007246 -24509791 + B1_Mus1 SINE Alu 1 147 -1 2 1538 3574 237 108 89 chr6 125007246 125007289 -24509748 - MERVL_2A-int LTR ERVL -1051 4710 4710 2 1538 930 187 29 161 chr6 125007289 125007356 -24509681 + B3 SINE B2 2 54 -162 2 1538 1020 82 228 0 chr6 125007356 125007514 -24509523 - B2_Mm2 SINE B2 0 195 2 2 1538 930 187 29 161 chr6 125007514 125007688 -24509349 + B3 SINE B2 55 211 -5 2 1538 3574 237 108 89 chr6 125007688 125007986 -24509051 - MERVL_2A-int LTR ERVL -1051 4710 4357 1 1538 988 254 191 21 chr6 125008056 125008386 -24508651 - MT2A LTR ERVL -147 386 1 2 1538 554 167 109 36 chr6 125008478 125008615 -24508422 - B1_Mm SINE Alu 0 147 1 2 1538 301 221 0 14 chr6 125008657 125008726 -24508311 - PB1 SINE Alu -8 119 52 2 1538 236 269 0 0 chr6 125009252 125009304 -24507733 - L2c LINE L2 -318 3069 3018 2 1538 1054 91 0 7 chr6 125009854 125010009 -24507028 - B2_Mm2 SINE B2 -39 156 3 2 1538 442 231 28 9 chr6 125010117 125010226 -24506811 - PB1D9 SINE Alu -9 111 1 2 1538 263 300 156 0 chr6 125010239 125010329 -24506708 - ID_B1 SINE B4 -2 222 119 3 1538 207 354 0 18 chr6 125011475 125011572 -24505465 + MIR SINE MIR 20 111 -165 3 1538 400 232 11 0 chr6 125011935 125012112 -24504925 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1538 207 0 0 0 chr6 125012115 125012138 -24504899 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 3 1538 198 0 0 0 chr6 125013361 125013383 -24503654 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 3 1538 2339 120 70 8 chr6 125013822 125014193 -24502844 - ORR1B1 LTR MaLR 0 394 1 3 1538 529 282 33 13 chr6 125014267 125014418 -24502619 + ID_B1 SINE B4 65 218 -6 3 1538 351 44 0 0 chr6 125014518 125014563 -24502474 + (GGGTG)n Simple_repeat Simple_repeat 1 45 0 3 1538 495 73 0 0 chr6 125014613 125014681 -24502356 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1538 254 311 0 0 chr6 125014687 125014748 -24502289 + ID_B1 SINE B4 77 137 -87 3 1538 249 274 53 40 chr6 125014698 125014774 -24502263 + B1F2 SINE Alu 7 83 -66 4 1538 1084 100 0 26 chr6 125014805 125014959 -24502078 - B1_Mur4 SINE Alu 0 150 1 4 1538 29 0 0 0 chr6 125014971 125015000 -24502037 + AT_rich Low_complexity Low_complexity 1 29 0 4 1538 611 257 36 0 chr6 125015004 125015144 -24501893 + B1_Mur1 SINE Alu 3 147 -2 4 1538 770 236 5 60 chr6 125015167 125015352 -24501685 + B3A SINE B2 8 182 -16 4 1538 571 279 210 21 chr6 125015363 125015496 -24501541 - Lx9 LINE L1 0 7644 7517 4 1538 1683 47 0 0 chr6 125015496 125015689 -24501348 - B2_Mm1t SINE B2 0 193 1 4 1538 571 279 210 21 chr6 125015689 125015718 -24501319 - Lx9 LINE L1 -128 7516 7473 4 1538 324 0 0 0 chr6 125015718 125015754 -24501283 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1538 571 279 210 21 chr6 125015754 125016066 -24500971 - Lx9 LINE L1 -172 7472 7081 4 1538 271 242 7 137 chr6 125016084 125016223 -24500814 + MT2B2 LTR ERVL 118 238 -346 4 1538 691 186 0 0 chr6 125016144 125016268 -24500769 + B1_Mur4 SINE Alu 6 129 -21 4 1538 2558 89 3 14 chr6 125016302 125016654 -24500383 + L1Md_F2 LINE L1 6230 6577 -5 5 1538 1684 42 0 0 chr6 125016657 125016850 -24500187 + B2_Mm1a SINE B2 1 193 0 5 1538 1273 34 0 0 chr6 125016945 125017092 -24499945 - B1_Mus2 SINE Alu 0 147 1 5 1538 423 0 0 0 chr6 125017596 125017643 -24499394 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1538 701 177 216 6 chr6 125018470 125018646 -24498391 - ID_B1 SINE B4 -7 217 5 5 1538 262 156 266 0 chr6 125018810 125018874 -24498163 - ID4_ SINE ID -1 82 2 5 1538 240 163 0 0 chr6 125019358 125019401 -24497636 + (TAA)n Simple_repeat Simple_repeat 2 44 0 5 1538 262 232 54 68 chr6 125019451 125019525 -24497512 + ID4 SINE ID 11 83 0 5 1538 210 325 39 13 chr6 125019882 125019960 -24497077 + PB1D7 SINE Alu 30 109 -11 5 1538 435 83 0 0 chr6 125020483 125020543 -24496494 + (TTCA)n Simple_repeat Simple_repeat 2 61 0 5 1538 1211 66 6 0 chr6 125020543 125020701 -24496336 - B2_Mm1t SINE B2 -33 160 2 6 1538 309 259 109 25 chr6 125020716 125020745 -24496292 - ID_B1 SINE B4 -2 222 94 6 1538 388 202 78 11 chr6 125020745 125020835 -24496202 - B1F2 SINE Alu -41 108 13 6 1538 237 65 0 0 chr6 125021494 125021525 -24495512 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1538 188 211 0 53 chr6 125022152 125022247 -24494790 + GA-rich Low_complexity Low_complexity 2 91 0 6 1538 1126 59 0 0 chr6 125022698 125022833 -24494204 + B1_Mus1 SINE Alu 1 135 -13 6 1538 1255 89 0 94 chr6 125022860 125023072 -24493965 + B2_Mm1t SINE B2 2 193 0 6 1538 942 160 191 11 chr6 125023093 125023276 -24493761 - B3 SINE B2 0 216 1 6 1538 512 243 62 51 chr6 125023303 125023481 -24493556 - B3A SINE B2 -18 180 1 6 1538 312 286 28 9 chr6 125023810 125023916 -24493121 - PB1D7 SINE Alu -1 119 12 6 1538 480 18 0 0 chr6 125023966 125024023 -24493014 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1538 248 333 189 6 chr6 125024261 125024436 -24492601 + MIRb SINE MIR 34 240 -28 7 1538 269 381 70 32 chr6 125024467 125024781 -24492256 - L2c LINE L2 -33 3354 3029 7 1538 255 304 12 12 chr6 125024888 125024968 -24492069 - MER2 DNA MER2_type -5 340 261 7 1538 294 296 86 23 chr6 125024996 125025015 -24492022 + B1F1 SINE Alu 3 138 -11 7 1538 403 226 46 28 chr6 125025015 125025124 -24491913 + ID_B1 SINE B4 103 213 -11 7 1538 227 232 219 10 chr6 125025267 125025363 -24491674 - PB1D10 SINE Alu -1 116 1 7 1538 964 203 16 5 chr6 125025381 125025569 -24491468 - B3 SINE B2 0 216 27 7 1538 742 167 70 53 chr6 125025565 125025736 -24491301 - B2_Mm2 SINE B2 -7 188 15 7 1538 421 211 16 106 chr6 125025780 125025939 -24491098 - B1_Mur2 SINE Alu -2 147 27 7 1538 245 227 110 33 chr6 125025947 125026038 -24490999 - MER2 DNA MER2_type -182 163 66 7 1538 303 50 0 0 chr6 125026231 125026271 -24490766 - ID_B1 SINE B4 -5 219 180 8 1538 281 174 302 0 chr6 125026271 125026317 -24490720 - PB1D10 SINE Alu -5 112 1 8 1538 447 112 0 0 chr6 125026363 125026443 -24490594 + (TCTG)n Simple_repeat Simple_repeat 2 81 0 8 1538 665 237 135 16 chr6 125026516 125026709 -24490328 - B3 SINE B2 0 216 1 8 1538 619 167 175 0 chr6 125026774 125026900 -24490137 - B1F2 SINE Alu 0 149 2 8 1538 207 0 0 0 chr6 125026913 125026936 -24490101 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1538 1301 92 6 17 chr6 125027259 125027277 -24489760 - B2_Mm2 SINE B2 -19 176 161 8 1538 288 0 0 0 chr6 125027277 125027309 -24489728 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 8 1538 1301 92 6 17 chr6 125027309 125027467 -24489570 - B2_Mm2 SINE B2 -35 160 2 8 1538 1053 90 0 33 chr6 125027499 125027649 -24489388 + B1_Mus1 SINE Alu 2 146 -2 8 1538 698 157 0 0 chr6 125027661 125027776 -24489261 - B1_Mus2 SINE Alu -13 134 20 8 1538 573 299 38 0 chr6 125027801 125027958 -24489079 - RSINE1 SINE B4 0 165 3 9 1538 555 53 0 0 chr6 125028029 125028104 -24488933 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 9 1538 462 141 106 21 chr6 125028128 125028222 -24488815 - B3 SINE B2 -113 103 2 9 1538 606 194 48 0 chr6 125028445 125028569 -24488468 - ID_B1 SINE B4 -5 219 90 9 1538 622 261 72 0 chr6 125028684 125028879 -24488158 + L1MB4 LINE L1 5851 6059 -121 9 1538 535 225 177 21 chr6 125028953 125029139 -24487898 + B3 SINE B2 1 215 -1 9 1538 304 250 9 99 chr6 125029147 125029258 -24487779 + MT2B LTR ERVL 163 263 -338 9 1538 606 243 3 35 chr6 125029163 125029333 -24487704 + B1_Mur1 SINE Alu 14 149 0 9 1538 240 35 0 0 chr6 125029340 125029369 -24487668 + (CAA)n Simple_repeat Simple_repeat 2 30 0 9 1538 989 218 10 0 chr6 125029370 125029572 -24487465 + B3 SINE B2 9 212 -4 9 1538 221 325 0 48 chr6 125029666 125029750 -24487287 + PB1 SINE Alu 46 125 -2 1 1538 597 209 0 9 chr6 125029790 125029906 -24487131 + ID_B1 SINE B4 105 219 -5 1 1538 1080 119 220 5 chr6 125030119 125030305 -24486732 + URR1A DNA MER1_type 1 226 0 1 1538 227 223 112 14 chr6 125030860 125030946 -24486091 - MIRc SINE MIR -130 138 40 1 1538 721 201 0 51 chr6 125033317 125033474 -24483563 - B1_Mur2 SINE Alu 0 149 1 1 1538 308 319 13 121 chr6 125033474 125033573 -24483464 - MT2B LTR ERVL -459 142 69 1 1538 678 169 6 96 chr6 125033503 125033660 -24483377 - B1_Mur3 SINE Alu 0 149 7 1 1538 267 212 142 148 chr6 125033556 125033711 -24483326 - ID_B1 SINE B4 -16 208 55 1 1538 213 189 14 42 chr6 125033823 125033895 -24483142 + C-rich Low_complexity Low_complexity 6 75 0 1 1538 309 310 85 0 chr6 125033924 125034053 -24482984 - Charlie1 DNA MER1_type -3 2778 2639 1 1538 587 276 117 5 chr6 125034047 125034244 -24482793 - Charlie1 DNA MER1_type -2555 226 8 1 1538 253 0 54 0 chr6 125034925 125034962 -24482075 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1538 585 260 13 125 chr6 125034964 125035188 -24481849 + ID_B1 SINE B4 12 210 -14 1 1538 279 0 0 0 chr6 125035192 125035223 -24481814 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1538 275 224 69 23 chr6 125035235 125035322 -24481715 + ID_B1 SINE B4 130 220 -4 1 1538 241 208 63 89 chr6 125035332 125035411 -24481626 + ID2 SINE ID 1 77 -6 1 1538 643 164 50 36 chr6 125035418 125035557 -24481480 + B1_Mur1 SINE Alu 9 149 0 1 1538 220 326 42 0 chr6 125035552 125035571 -24481466 + B4 SINE B4 69 91 -201 1 1538 282 307 8 42 chr6 125035571 125035690 -24481347 + PB1D10 SINE Alu 3 117 0 1 1538 671 131 98 0 chr6 125035725 125035847 -24481190 + B1_Mur4 SINE Alu 9 142 -8 1 1538 517 262 29 112 chr6 125035935 125036141 -24480896 + L2a LINE L2 3233 3421 -5 1 1538 407 185 0 12 chr6 125036678 125036760 -24480277 + PB1D10 SINE Alu 36 116 -1 1 1538 300 320 29 20 chr6 125036873 125036975 -24480062 + B1F1 SINE Alu 7 109 -40 1 1538 309 245 133 0 chr6 125037131 125037229 -24479808 - PB1D10 SINE Alu 0 117 7 1 1538 184 259 171 12 chr6 125037269 125037351 -24479686 - MIR SINE MIR -107 155 61 1 1538 2956 143 43 4 chr6 125037481 125037994 -24479043 + RMER15 LTR ERVL 1 533 -42 1 1538 453 282 54 30 chr6 125038329 125038497 -24478540 + MIRb SINE MIR 34 205 -63 1 1538 192 161 16 31 chr6 125040119 125040183 -24476854 + GA-rich Low_complexity Low_complexity 1 63 0 1 1538 835 260 53 10 chr6 125040941 125041147 -24475890 + B3 SINE B2 2 216 0 1 1538 661 200 0 24 chr6 125041508 125041631 -24475406 + PB1D9 SINE Alu 1 120 0 1 1538 242 87 22 0 chr6 125041633 125041679 -24475358 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 1 1538 1168 63 0 0 chr6 125041907 125042050 -24474987 + B1_Mus1 SINE Alu 1 143 -5 1 1538 587 255 14 14 chr6 125042129 125042272 -24474765 - B1_Mus1 SINE Alu -1 147 5 1 1539 386 242 42 0 chr6 125042831 125042926 -24474111 + B3A SINE B2 27 125 -73 1 1539 378 0 0 0 chr6 125042935 125042977 -24474060 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1539 249 108 0 0 chr6 125042977 125043013 -24474024 + (CACG)n Simple_repeat Simple_repeat 3 39 0 1 1539 1262 34 0 0 chr6 125043048 125043195 -24473842 + B1_Mus2 SINE Alu 1 147 0 1 1539 180 111 0 0 chr6 125043212 125043239 -24473798 + (G)n Simple_repeat Simple_repeat 1 27 0 1 1539 1237 101 73 0 chr6 125043240 125043419 -24473618 + B2_Mm1t SINE B2 2 193 0 1 1539 270 56 0 0 chr6 125043451 125043487 -24473550 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1539 1199 132 184 0 chr6 125043718 125043908 -24473129 + URR1B DNA MER1_type 1 225 0 1 1539 189 107 0 0 chr6 125044017 125044045 -24472992 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1539 380 212 46 23 chr6 125044052 125044226 -24472811 - RMER17C LTR ERVK -135 275 98 1 1539 228 195 0 0 chr6 125044312 125044353 -24472684 + MamSINE1 SINE tRNA 5 45 -245 1 1539 386 288 33 25 chr6 125044371 125044492 -24472545 - ID_B1 SINE B4 -6 218 97 1 1539 329 345 49 0 chr6 125044492 125044507 -24472530 - B1F SINE Alu 0 115 1 1 1539 198 71 0 0 chr6 125050970 125050998 -24466039 + (GGA)n Simple_repeat Simple_repeat 3 30 0 1 1539 198 0 0 0 chr6 125052762 125052784 -24464253 + (GGGTG)n Simple_repeat Simple_repeat 2 23 0 1 1539 457 224 51 94 chr6 125053526 125053541 -24463496 - B1_Mur4 SINE Alu -5 145 132 1 1539 1627 27 21 0 chr6 125053541 125053728 -24463309 - B2_Mm1a SINE B2 -2 191 1 1 1539 489 174 45 71 chr6 125053728 125053850 -24463187 - B1_Mur2 SINE Alu -19 131 13 1 1539 553 28 0 0 chr6 125053848 125053920 -24463117 + B1_Mus2 SINE Alu 76 147 0 1 1539 507 278 22 29 chr6 125054048 125054185 -24462852 - B1_Mur1 SINE Alu -5 144 9 1 1539 244 357 26 65 chr6 125054185 125054201 -24462836 - ID_B1 SINE B4 -5 219 73 1 1539 547 255 72 7 chr6 125054218 125054356 -24462681 + B1_Mur1 SINE Alu 3 149 0 1 1539 311 212 142 12 chr6 125054415 125054548 -24462489 - B4A SINE B4 -24 268 115 1 1539 618 58 0 0 chr6 125054554 125054641 -24462396 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 1539 344 267 124 0 chr6 125054652 125054757 -24462280 - B3 SINE B2 -81 135 18 1 1539 1395 110 5 0 chr6 125056144 125056335 -24460702 - B2_Mm1a SINE B2 0 193 2 1 1539 340 277 53 0 chr6 125057228 125057322 -24459715 - PB1D10 SINE Alu -13 104 6 1 1539 236 236 30 110 chr6 125057246 125057346 -24459691 - MT2B LTR ERVL -358 243 152 1 1539 642 257 37 32 chr6 125057824 125058013 -24459024 - B3 SINE B2 0 216 27 1 1539 639 182 84 35 chr6 125060438 125060580 -24456457 + B1_Mur3 SINE Alu 1 149 0 1 1539 468 158 0 0 chr6 125060610 125060686 -24456351 - B3 SINE B2 -100 116 41 1 1539 329 270 22 11 chr6 125060685 125060775 -24456262 - B1_Mur1 SINE Alu -12 137 47 1 1539 365 341 96 0 chr6 125060889 125061024 -24456013 - RSINE1 SINE B4 -16 149 2 1 1539 1238 147 34 14 chr6 125061044 125061251 -24455786 - B3 SINE B2 -5 211 1 1 1539 282 318 96 72 chr6 125061464 125061630 -24455407 - B3A SINE B2 -1 197 28 1 1539 225 286 16 0 chr6 125061870 125061933 -24455104 + ID_B1 SINE B4 88 151 -73 1 1539 722 198 19 130 chr6 125061929 125062113 -24454924 + B3 SINE B2 17 184 -32 1 1539 1177 28 28 7 chr6 125062113 125062257 -24454780 + B1_Mus2 SINE Alu 1 147 0 1 1539 722 194 19 135 chr6 125062257 125062302 -24454735 + B3 SINE B2 185 216 0 1 1539 25 0 0 0 chr6 125062303 125062328 -24454709 + AT_rich Low_complexity Low_complexity 1 25 0 1 1539 272 324 144 0 chr6 125062384 125062523 -24454514 + RSINE1 SINE B4 3 161 -4 1 1539 492 217 201 18 chr6 125062719 125062883 -24454154 + ID_B1 SINE B4 28 221 -3 1 1539 238 283 169 32 chr6 125062888 125063012 -24454025 - L1MC4a LINE L1 -101 7781 7641 1 1539 527 222 68 0 chr6 125063192 125063354 -24453683 - L1MC4a LINE L1 -486 7396 7224 1 1539 1210 77 118 0 chr6 125064732 125064901 -24452136 - B2_Mm2 SINE B2 -6 189 1 1 1539 360 252 100 27 chr6 125065330 125065440 -24451597 - ID_B1 SINE B4 -29 195 78 1 1539 523 308 130 25 chr6 125065466 125065666 -24451371 - ID_B1 SINE B4 -2 222 2 1 1539 1328 17 23 0 chr6 125065701 125065876 -24451161 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 1 1539 225 0 0 0 chr6 125065991 125066016 -24451021 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1539 810 250 9 68 chr6 125066082 125066301 -24450736 - ID_B1 SINE B4 -4 220 15 1 1539 188 81 0 75 chr6 125066419 125066459 -24450578 + T-rich Low_complexity Low_complexity 1 37 0 1 1539 442 257 44 9 chr6 125066588 125066702 -24450335 - PB1D9 SINE Alu 0 120 3 1 1539 1454 60 5 5 chr6 125066827 125067012 -24450025 - B2_Mm2 SINE B2 -9 186 2 1 1539 1045 70 0 0 chr6 125067090 125067232 -24449805 - B1_Mus1 SINE Alu 0 148 7 1 1539 882 245 53 14 chr6 125067232 125067439 -24449598 - ID_B1 SINE B4 -9 215 1 1 1539 210 292 78 11 chr6 125067446 125067536 -24449501 - PB1 SINE Alu -28 99 4 1 1539 560 148 36 18 chr6 125067706 125067816 -24449221 + PB1D9 SINE Alu 9 120 0 1 1539 429 241 8 10 chr6 125068170 125068278 -24448759 - PB1D7 SINE Alu -3 114 8 1 1539 185 35 0 65 chr6 125068289 125068320 -24448717 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 1 1539 536 278 6 31 chr6 125068541 125068701 -24448336 + B3 SINE B2 58 213 -3 1 1539 542 286 21 136 chr6 125069012 125069076 -24447961 - ID_B1 SINE B4 -15 209 153 1 1539 1438 94 16 0 chr6 125069076 125069267 -24447770 - B2_Mm2 SINE B2 0 195 2 1 1539 542 286 21 136 chr6 125069267 125069287 -24447750 - ID_B1 SINE B4 -72 152 141 1 1539 1144 63 0 0 chr6 125069287 125069429 -24447608 - B1_Mus1 SINE Alu -5 143 2 1 1539 542 286 21 136 chr6 125069429 125069578 -24447459 - ID_B1 SINE B4 -84 140 2 1 1539 408 274 16 33 chr6 125069622 125069743 -24447294 + B1_Mur3 SINE Alu 31 149 0 1 1539 245 229 0 0 chr6 125072150 125072198 -24444839 + C-rich Low_complexity Low_complexity 1 48 0 1 1539 204 188 0 0 chr6 125072834 125072866 -24444171 + polypurine Low_complexity Low_complexity 2 33 0 1 1539 420 20 0 0 chr6 125073114 125073163 -24443874 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1539 328 111 37 0 chr6 125073200 125073254 -24443783 - B1F1 SINE Alu -6 143 88 1 1539 786 199 188 0 chr6 125073810 125073986 -24443051 - B3 SINE B2 -3 213 5 1 1539 448 138 48 87 chr6 125074075 125074178 -24442859 + B1_Mur1 SINE Alu 49 147 -2 1 1539 316 257 177 35 chr6 125074894 125075035 -24442002 - MER58B DNA MER1_type -2 339 179 1 1539 684 73 0 20 chr6 125075035 125075133 -24441904 + B1_Mus2 SINE Alu 51 146 -1 2 1539 363 365 6 25 chr6 125075173 125075333 -24441704 - MER58B DNA MER1_type -184 157 1 1 1539 210 314 70 0 chr6 125075585 125075671 -24441366 + PB1D10 SINE Alu 6 97 -20 2 1539 272 261 58 0 chr6 125075668 125075737 -24441300 + ID_B1 SINE B4 97 169 -55 2 1539 228 315 79 0 chr6 125075737 125075757 -24441280 + PB1D10 SINE Alu 16 111 -6 2 1539 444 165 0 25 chr6 125075995 125076076 -24440961 + B3 SINE B2 15 93 -123 2 1539 974 132 28 0 chr6 125076142 125076286 -24440751 + B1_Mus1 SINE Alu 1 148 0 2 1539 390 233 12 0 chr6 125076484 125076570 -24440467 + B1_Mm SINE Alu 61 147 0 2 1539 270 0 0 0 chr6 125076715 125076745 -24440292 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1539 275 259 34 34 chr6 125076832 125076920 -24440117 - PB1D10 SINE Alu -1 116 29 2 1539 558 260 100 17 chr6 125076946 125077126 -24439911 + ID_B1 SINE B4 1 195 -29 2 1539 1084 96 7 0 chr6 125077143 125077289 -24439748 - B1_Mus1 SINE Alu 0 148 2 2 1539 887 161 0 57 chr6 125077386 125077544 -24439493 + B1_Mur3 SINE Alu 1 149 0 2 1539 463 241 89 0 chr6 125077552 125077664 -24439373 + B1_Mur1 SINE Alu 22 143 -6 2 1539 231 208 19 19 chr6 125077950 125078004 -24439033 - RSINE1 SINE B4 -25 140 87 2 1539 1090 64 35 21 chr6 125078038 125078182 -24438855 - B1_Mus2 SINE Alu 0 147 2 2 1539 343 230 23 0 chr6 125078193 125078280 -24438757 - RSINE1 SINE B4 -74 91 3 2 1539 358 109 18 0 chr6 125078358 125078413 -24438624 + B2_Mm2 SINE B2 2 57 -138 2 1539 1200 68 7 0 chr6 125078454 125078600 -24438437 + B1_Mus2 SINE Alu 1 147 0 2 1539 189 0 0 0 chr6 125078617 125078638 -24438399 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1539 222 208 0 20 chr6 125079016 125079065 -24437972 + C-rich Low_complexity Low_complexity 3 50 0 2 1539 339 85 0 0 chr6 125079460 125079507 -24437530 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1539 212 175 0 0 chr6 125080517 125080557 -24436480 + A-rich Low_complexity Low_complexity 1 40 0 2 1539 219 219 0 0 chr6 125080898 125080939 -24436098 - B1_Mus1 SINE Alu -89 59 19 2 1539 212 225 0 0 chr6 125080978 125081018 -24436019 - B1_Mus1 SINE Alu -89 59 20 2 1539 1312 78 78 0 chr6 125081059 125081239 -24435798 - B2_Mm2 SINE B2 -1 194 1 2 1539 444 200 167 0 chr6 125081250 125081370 -24435667 - B1_Mur3 SINE Alu -5 144 5 2 1539 401 299 8 38 chr6 125081396 125081528 -24435509 - RSINE1 SINE B4 -31 134 7 2 1539 185 0 0 39 chr6 125083035 125083061 -24433976 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 2 1539 1177 58 0 0 chr6 125083062 125083201 -24433836 - B1_Mus2 SINE Alu -8 139 1 2 1539 210 71 0 0 chr6 125083914 125083942 -24433095 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1539 564 168 0 0 chr6 125083999 125084094 -24432943 - B1_Mur4 SINE Alu -12 138 44 2 1539 235 220 0 78 chr6 125084045 125084109 -24432928 - 4.5SRNA scRNA scRNA -8 86 28 2 1539 851 208 140 16 chr6 125084118 125084304 -24432733 - B3 SINE B2 -6 210 2 2 1539 518 226 43 0 chr6 125084782 125084897 -24432140 - PB1D9 SINE Alu 0 120 1 2 1539 370 211 73 10 chr6 125084909 125085005 -24432032 - B1F SINE Alu -39 110 9 2 1539 272 333 9 29 chr6 125085007 125085112 -24431925 - PB1D10 SINE Alu -14 103 1 2 1539 255 305 46 37 chr6 125085236 125085345 -24431692 - B3 SINE B2 -11 205 96 2 1539 645 280 71 6 chr6 125085396 125085565 -24431472 + B3A SINE B2 1 180 -18 2 1539 948 143 0 20 chr6 125085616 125085766 -24431271 + B1_Mus2 SINE Alu 1 147 0 2 1539 234 338 54 0 chr6 125085932 125086006 -24431031 - PB1D10 SINE Alu -23 94 17 2 1539 256 250 101 14 chr6 125086061 125086130 -24430907 + MT2B2 LTR ERVL 167 241 -343 2 1539 337 183 151 23 chr6 125086070 125086158 -24430879 + B1F SINE Alu 25 124 -3 2 1539 223 315 95 76 chr6 125086167 125086325 -24430712 + B2_Mm1t SINE B2 1 161 -32 2 1539 537 281 123 0 chr6 125086342 125086513 -24430524 + B3 SINE B2 5 196 -20 2 1539 189 69 0 0 chr6 125086520 125086528 -24430509 + (T)n Simple_repeat Simple_repeat 1 8 0 2 1539 1142 95 0 0 chr6 125086528 125086676 -24430361 - B1_Mus1 SINE Alu 0 148 1 2 1539 189 69 0 0 chr6 125086676 125086696 -24430341 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1539 1290 40 0 0 chr6 125088062 125088210 -24428827 + B1_Mus1 SINE Alu 1 148 0 2 1539 1725 38 359 17 chr6 125088259 125088557 -24428480 - MTB LTR MaLR 0 400 1 2 1539 245 275 154 0 chr6 125088635 125088726 -24428311 - B3 SINE B2 -110 106 2 2 1539 477 141 54 11 chr6 125088745 125088838 -24428199 - PB1D9 SINE Alu 0 120 24 2 1539 406 243 60 73 chr6 125088840 125088856 -24428181 - B1F2 SINE Alu 0 149 80 2 1539 490 242 25 0 chr6 125088856 125088976 -24428061 - ID_B1 SINE B4 -8 216 94 2 1539 406 243 60 73 chr6 125088976 125088991 -24428046 - B1F2 SINE Alu 0 79 1 2 1539 401 231 132 0 chr6 125089152 125089243 -24427794 - ID_B1 SINE B4 -104 120 18 2 1539 259 253 265 0 chr6 125089323 125089406 -24427631 + PB1D7 SINE Alu 11 115 -5 2 1539 279 79 0 0 chr6 125091791 125091829 -24425208 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1539 287 274 157 75 chr6 125091833 125091967 -24425070 - RSINE1 SINE B4 -1 164 20 2 1539 586 278 29 17 chr6 125092036 125092208 -24424829 - Lx8 LINE L1 -146 7327 7154 2 1539 1278 27 0 0 chr6 125092832 125092978 -24424059 - B1_Mus2 SINE Alu -1 146 1 2 1539 454 195 93 42 chr6 125093043 125093161 -24423876 + B1_Mur2 SINE Alu 22 145 -4 2 1539 1360 73 67 6 chr6 125093508 125093531 -24423506 - B2_Mm1a SINE B2 0 193 159 2 1539 198 0 0 0 chr6 125093531 125093553 -24423484 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2 1539 1360 73 67 6 chr6 125093553 125093709 -24423328 - B2_Mm1a SINE B2 -35 158 3 2 1539 781 172 14 14 chr6 125093713 125093860 -24423177 - B1_Mus1 SINE Alu 0 148 2 2 1539 677 76 38 0 chr6 125093881 125093986 -24423051 - B1_Mm SINE Alu -1 146 38 2 1539 250 232 27 55 chr6 125096251 125096324 -24420713 + B2_Mm2 SINE B2 62 132 -63 2 1539 312 202 11 102 chr6 125100002 125100090 -24416947 + ID_B1 SINE B4 91 170 -54 2 1539 287 208 147 59 chr6 125100090 125100104 -24416933 + PB1D7 SINE Alu 10 120 0 2 1539 1484 73 5 10 chr6 125100106 125100300 -24416737 + B2_Mm1t SINE B2 1 193 0 2 1539 347 290 63 28 chr6 125100311 125100453 -24416584 + MIR SINE MIR 3 149 -113 2 1539 1144 75 0 26 chr6 125100600 125100751 -24416286 - B1_Mus1 SINE Alu 0 148 2 2 1539 435 206 6 221 chr6 125100760 125100863 -24416174 - B1_Mus1 SINE Alu -6 142 66 2 1539 1187 49 0 0 chr6 125100863 125101006 -24416031 - B1_Mus1 SINE Alu -5 143 1 2 1539 435 206 6 221 chr6 125101006 125101083 -24415954 - B1_Mus1 SINE Alu -83 65 1 2 1539 188 198 151 58 chr6 125101241 125101327 -24415710 - L2b LINE L2 -179 3196 3103 2 1539 228 288 14 14 chr6 125101734 125101808 -24415229 + CT-rich Low_complexity Low_complexity 1 74 0 2 1539 1045 168 5 5 chr6 125102166 125102357 -24414680 - B3 SINE B2 -6 210 20 2 1539 233 259 4 4 chr6 125103664 125103733 -24413304 + MIRb SINE MIR 5 80 -188 2 1539 339 25 0 0 chr6 125103785 125103825 -24413212 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1539 360 0 0 0 chr6 125103825 125103865 -24413172 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 2 1539 510 311 27 0 chr6 125103865 125104013 -24413024 - RSINE1 SINE B4 -3 162 11 2 1539 360 131 307 61 chr6 125104055 125104169 -24412868 - B1_Mus1 SINE Alu 0 148 7 2 1539 294 308 33 0 chr6 125104211 125104302 -24412735 - PB1D10 SINE Alu -1 116 23 2 1539 393 22 0 0 chr6 125104368 125104414 -24412623 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1539 749 289 58 82 chr6 125104424 125104586 -24412451 - B4 SINE B4 -2 290 132 2 1539 279 0 0 0 chr6 125104586 125104617 -24412420 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 2 1539 749 289 58 82 chr6 125104617 125104661 -24412376 - B4 SINE B4 -161 131 88 2 1539 705 138 145 44 chr6 125104661 125104680 -24412357 - B2_Mm2 SINE B2 -19 176 159 2 1539 225 0 0 0 chr6 125104680 125104705 -24412332 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2 1539 705 138 145 44 chr6 125104705 125104844 -24412193 - B2_Mm2 SINE B2 -37 158 2 2 1539 749 289 58 82 chr6 125104844 125104930 -24412107 - B4 SINE B4 -205 87 4 2 1539 599 142 0 9 chr6 125105020 125105127 -24411910 + CT-rich Low_complexity Low_complexity 3 108 0 2 1539 658 211 22 8 chr6 125105128 125105262 -24411775 - B3A SINE B2 -51 147 12 2 1539 232 250 51 26 chr6 125105193 125105271 -24411766 - B4 SINE B4 -212 80 1 2 1539 226 217 234 0 chr6 125105276 125105360 -24411677 - PB1D7 SINE Alu -13 107 7 2 1539 307 208 24 61 chr6 125106235 125106317 -24410720 + ID4_ SINE ID 2 80 -3 2 1539 687 203 23 0 chr6 125106319 125106452 -24410585 + B1_Mur3 SINE Alu 5 140 -9 2 1539 216 0 0 0 chr6 125106993 125107017 -24410020 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1539 270 0 0 0 chr6 125107056 125107086 -24409951 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1539 931 188 147 0 chr6 125107965 125108162 -24408875 - URR1A DNA MER1_type 0 226 1 2 1539 1127 76 7 0 chr6 125108166 125108310 -24408727 + B1_Mus2 SINE Alu 2 146 -1 2 1539 1754 16 0 0 chr6 125108328 125108521 -24408516 - B2_Mm1t SINE B2 0 193 1 2 1539 259 259 0 0 chr6 125108558 125108616 -24408421 - RSINE1 SINE B4 0 165 108 2 1539 198 0 0 0 chr6 125108761 125108783 -24408254 + (CACCG)n Simple_repeat Simple_repeat 3 24 0 2 1539 262 258 0 0 chr6 125109509 125109571 -24407466 + ID4_ SINE ID 1 62 -21 2 1539 741 168 0 0 chr6 125109610 125109789 -24407248 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1539 24 0 0 0 chr6 125109806 125109830 -24407207 + AT_rich Low_complexity Low_complexity 1 24 0 2 1539 382 345 8 8 chr6 125109835 125109955 -24407082 + PB1D9 SINE Alu 1 120 0 2 1539 395 279 63 21 chr6 125109990 125110133 -24406904 + B1F2 SINE Alu 1 149 0 3 1539 224 204 122 0 chr6 125110206 125110255 -24406782 + 7SLRNA srpRNA srpRNA 29 83 -231 3 1539 309 253 33 54 chr6 125117795 125117887 -24399150 - MER20 DNA MER1_type -124 95 6 3 1539 282 73 0 0 chr6 125118436 125118477 -24398560 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1539 279 274 126 13 chr6 125119221 125119380 -24397657 + L1MC1 LINE L1 6140 6316 -17 3 1539 438 198 88 0 chr6 125119398 125119489 -24397548 + PB1D9 SINE Alu 12 110 -10 3 1539 539 253 89 19 chr6 125119499 125119686 -24397351 + B3 SINE B2 1 187 -8 3 1539 283 270 16 0 chr6 125120575 125120638 -24396399 + ID4_ SINE ID 5 68 -15 3 1539 387 0 0 0 chr6 125120652 125120695 -24396342 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 3 1539 537 235 34 0 chr6 125122001 125122120 -24394917 - B1_Mur2 SINE Alu -1 148 26 3 1539 647 208 103 33 chr6 125122217 125122401 -24394636 - B3 SINE B2 -19 197 1 3 1539 591 53 0 0 chr6 125124657 125124732 -24392305 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 1539 1138 78 0 14 chr6 125124734 125124878 -24392159 - B1_Mus2 SINE Alu -5 142 1 3 1539 180 97 0 0 chr6 125125848 125125879 -24391158 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1539 386 245 65 9 chr6 125125912 125126019 -24391018 + PB1D7 SINE Alu 5 117 -3 3 1539 1220 35 0 0 chr6 125126458 125126599 -24390438 + B1_Mm SINE Alu 2 142 -5 3 1539 207 0 0 0 chr6 125126600 125126623 -24390414 + (CAAAC)n Simple_repeat Simple_repeat 3 25 0 3 1539 836 218 63 0 chr6 125127089 125127263 -24389774 + B3 SINE B2 32 216 0 3 1539 441 283 117 0 chr6 125128171 125128291 -24388746 + RSINE1 SINE B4 1 134 -31 3 1539 389 274 57 0 chr6 125128416 125128540 -24388497 - B1F SINE Alu -13 136 6 3 1539 433 318 26 96 chr6 125128755 125128776 -24388261 - ID_B1 SINE B4 -54 238 192 3 1539 497 312 14 7 chr6 125128776 125128915 -24388122 - B1_Mur2 SINE Alu -7 142 3 3 1539 433 318 26 96 chr6 125128915 125128988 -24388049 - ID_B1 SINE B4 -54 191 16 3 1539 1142 102 39 92 chr6 125130132 125130338 -24386699 + B2_Mm2 SINE B2 1 195 0 3 1539 1470 69 37 0 chr6 125130414 125130602 -24386435 + B2_Mm2 SINE B2 1 195 0 3 1539 989 194 22 0 chr6 125130602 125130782 -24386255 + B3 SINE B2 33 216 0 3 1539 425 242 0 0 chr6 125130786 125130877 -24386160 - ID_B1 SINE B4 -3 221 131 3 1539 366 300 39 130 chr6 125131575 125131805 -24385232 - B3 SINE B2 -6 210 2 3 1539 252 271 29 0 chr6 125131952 125132022 -24385015 + B4A SINE B4 1 72 -220 3 1539 468 237 88 0 chr6 125132078 125132192 -24384845 - B1_Mur1 SINE Alu -24 125 2 3 1539 448 247 82 0 chr6 125132989 125133086 -24383951 + ID_B1 SINE B4 104 208 -16 3 1539 1267 75 12 6 chr6 125133204 125133216 -24383821 - B2_Mm1t SINE B2 -19 174 161 3 1539 234 0 0 0 chr6 125133216 125133242 -24383795 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3 1539 1267 75 12 6 chr6 125133242 125133402 -24383635 - B2_Mm1t SINE B2 -33 160 1 3 1539 1185 56 0 0 chr6 125133603 125133745 -24383292 - B1_Mus1 SINE Alu -5 143 2 3 1539 24 0 0 0 chr6 125133747 125133771 -24383266 + AT_rich Low_complexity Low_complexity 1 24 0 3 1539 963 227 155 4 chr6 125134921 125135173 -24381864 - B4 SINE B4 0 292 3 3 1539 726 193 20 40 chr6 125135173 125135324 -24381713 - B1_Mur1 SINE Alu -1 148 1 3 1539 792 182 30 0 chr6 125135390 125135522 -24381515 + B1_Mur1 SINE Alu 9 144 -5 3 1539 311 179 410 0 chr6 125137711 125137789 -24379248 + PB1D9 SINE Alu 5 114 -6 3 1539 578 218 0 9 chr6 125138125 125138236 -24378801 - PB1D9 SINE Alu -10 110 1 3 1539 997 98 28 14 chr6 125138313 125138458 -24378579 + B1_Mur4 SINE Alu 4 150 0 3 1539 282 224 0 118 chr6 125138733 125138758 -24378279 - ID4_ SINE ID -15 68 2 3 1539 291 235 0 0 chr6 125138758 125138809 -24378228 - ID SINE ID -172 52 2 3 1539 606 211 0 0 chr6 125139265 125139369 -24377668 - B3 SINE B2 -112 104 1 3 1539 1296 14 0 20 chr6 125139431 125139582 -24377455 + B1_Mus1 SINE Alu 1 148 0 3 1539 25 0 0 0 chr6 125140036 125140061 -24376976 + AT_rich Low_complexity Low_complexity 1 25 0 3 1539 226 277 68 144 chr6 125140119 125140237 -24376800 + PB1D10 SINE Alu 1 109 -8 3 1539 247 164 119 0 chr6 125140305 125140372 -24376665 - L1M2 LINE L1 -3330 2813 2739 3 1539 602 114 140 19 chr6 125140496 125140603 -24376434 + PB1D9 SINE Alu 1 120 0 3 1539 356 237 54 0 chr6 125140954 125141047 -24375990 + B1F1 SINE Alu 1 98 -51 3 1539 320 0 25 0 chr6 125141065 125141105 -24375932 + (CAA)n Simple_repeat Simple_repeat 1 41 0 3 1539 292 312 12 0 chr6 125142849 125142929 -24374108 - MIRb SINE MIR -165 103 23 3 1539 221 293 182 48 chr6 125142929 125143094 -24373943 - B3A SINE B2 0 216 30 3 1539 24 32 0 0 chr6 125143699 125143730 -24373307 + AT_rich Low_complexity Low_complexity 1 31 0 3 1539 243 240 107 0 chr6 125143734 125143809 -24373228 - ID4_ SINE ID 0 83 1 3 1539 1054 117 104 0 chr6 125144097 125144260 -24372777 + B2_Mm1t SINE B2 2 181 -12 3 1539 368 119 28 2 chr6 125144315 125144422 -24372615 + B2_Mm2 SINE B2 47 192 -3 3 1539 652 164 101 8 chr6 125144652 125144781 -24372256 - B1_Mur4 SINE Alu 0 150 10 3 1539 416 251 145 31 chr6 125144903 125145096 -24371941 + B3 SINE B2 1 215 -1 3 1539 657 57 383 9 chr6 125145098 125145205 -24371832 + B1_Mm SINE Alu 1 147 0 3 1539 379 270 120 17 chr6 125145250 125145367 -24371670 - B1F SINE Alu -20 129 1 3 1539 1177 61 0 7 chr6 125145447 125145595 -24371442 + B1_Mus1 SINE Alu 2 148 0 3 1539 1519 234 69 53 chr6 125145611 125146103 -24370934 + Lx5 LINE L1 6539 7038 -12 3 1539 397 131 14 28 chr6 125146426 125146497 -24370540 - B3A SINE B2 -128 70 1 3 1539 379 231 207 0 chr6 125146629 125146750 -24370287 + B1_Mur1 SINE Alu 4 149 0 3 1539 709 196 68 0 chr6 125146780 125146890 -24370147 + B1_Mur3 SINE Alu 7 117 -32 3 1539 459 0 0 0 chr6 125146890 125146941 -24370096 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1539 709 196 68 0 chr6 125146941 125146963 -24370074 + B1_Mur3 SINE Alu 118 146 -3 3 1539 827 159 87 43 chr6 125147329 125147513 -24369524 - B2_Mm2 SINE B2 -3 192 1 3 1539 513 0 0 0 chr6 125147590 125147647 -24369390 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1539 405 242 62 15 chr6 125148032 125148162 -24368875 + L1MB8 LINE L1 5549 5684 -500 3 1539 221 314 47 0 chr6 125148231 125148317 -24368720 + B1F1 SINE Alu 10 99 -50 3 1539 345 304 11 0 chr6 125148243 125148335 -24368702 + ID_B1 SINE B4 103 195 -29 3 1539 343 244 33 99 chr6 125148323 125148414 -24368623 + RSINE1 SINE B4 50 134 -31 3 1539 281 290 15 46 chr6 125148451 125148581 -24368456 + L1MB8 LINE L1 5742 5867 -307 3 1539 1044 58 41 54 chr6 125148591 125148738 -24368299 + B1_Mus1 SINE Alu 4 148 0 3 1539 343 318 57 11 chr6 125148758 125148933 -24368104 + L1MB8 LINE L1 5862 6044 -134 3 1539 198 143 0 0 chr6 125149429 125149447 -24367590 + (T)n Simple_repeat Simple_repeat 1 18 0 3 1539 1207 75 0 0 chr6 125149447 125149594 -24367443 - B1_Mus2 SINE Alu 0 147 1 3 1539 198 143 0 0 chr6 125149594 125149613 -24367424 + (T)n Simple_repeat Simple_repeat 1 19 0 3 1539 1260 48 0 0 chr6 125149613 125149760 -24367277 - B1_Mm SINE Alu 0 147 1 3 1539 198 143 0 0 chr6 125149760 125149770 -24367267 + (T)n Simple_repeat Simple_repeat 1 10 0 3 1539 656 269 0 7 chr6 125149771 125149913 -24367124 - ID_B1 SINE B4 -2 222 82 3 1539 398 355 16 0 chr6 125149982 125150106 -24366931 + ID_B1 SINE B4 2 127 -97 3 1539 28 48 0 0 chr6 125150201 125150243 -24366794 + AT_rich Low_complexity Low_complexity 1 42 0 3 1539 1203 174 82 39 chr6 125150243 125150525 -24366512 + ORR1D1 LTR MaLR 52 345 -29 3 1539 209 33 0 32 chr6 125150527 125150558 -24366479 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1539 3068 77 14 9 chr6 125150582 125151001 -24366036 - BGLII LTR ERVK 0 421 1 3 1539 3433 195 109 6 chr6 125151002 125151935 -24365102 - MYSERV16_I-int LTR ERVK -1 2325 1297 3 1539 496 191 24 73 chr6 125151957 125152081 -24364956 - RMER3D-int LTR ERVK -1193 1649 1532 3 1539 1909 165 92 43 chr6 125152113 125152810 -24364227 - RMER3D-int LTR ERVK -1309 1533 652 3 1539 520 105 0 0 chr6 125152825 125152913 -24364124 - RMER3D-int LTR ERVK -2278 564 489 3 1539 2852 64 71 10 chr6 125153320 125153715 -24363322 - BGLII LTR ERVK 0 421 3 3 1539 1385 89 15 15 chr6 125153797 125153992 -24363045 + B2_Mm2 SINE B2 1 195 0 3 1539 329 301 0 46 chr6 125154080 125154167 -24362870 + ID SINE ID 3 85 -139 3 1539 302 248 39 110 chr6 125154167 125154207 -24362830 + BC1_Mm scRNA scRNA 3 120 -32 3 1539 714 230 114 6 chr6 125154228 125154403 -24362634 - B3 SINE B2 0 216 23 3 1539 22 0 0 0 chr6 125154424 125154446 -24362591 + AT_rich Low_complexity Low_complexity 1 22 0 3 1539 708 226 29 93 chr6 125154453 125154658 -24362379 - B3A SINE B2 -6 192 1 3 1539 457 216 0 0 chr6 125154680 125154754 -24362283 + ID4_ SINE ID 2 75 -8 3 1539 234 0 0 0 chr6 125154777 125154803 -24362234 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1539 1274 34 0 0 chr6 125154803 125154950 -24362087 - B1_Mus2 SINE Alu 0 147 1 3 1539 255 211 39 0 chr6 125155157 125155209 -24361828 + ID4_ SINE ID 10 63 -20 3 1539 809 186 14 14 chr6 125155243 125155390 -24361647 + B1_Mur2 SINE Alu 1 147 -2 3 1539 191 81 0 51 chr6 125155391 125155430 -24361607 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 3 1539 243 88 0 0 chr6 125155451 125155485 -24361552 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 3 1539 329 286 0 23 chr6 125155506 125155592 -24361445 + ID_B1 SINE B4 83 166 -58 3 1539 313 311 86 19 chr6 125155507 125155612 -24361425 + PB1D10 SINE Alu 3 114 -3 4 1539 359 241 111 0 chr6 125155686 125155794 -24361243 + PB1D7 SINE Alu 1 120 0 4 1539 208 237 0 33 chr6 125155794 125155845 -24361192 + G-rich Low_complexity Low_complexity 10 59 0 4 1539 671 149 157 0 chr6 125155995 125156116 -24360921 - B1_Mur3 SINE Alu 0 149 10 4 1539 491 208 118 44 chr6 125156116 125156129 -24360908 - ID_B1 SINE B4 0 222 79 4 1539 261 0 0 0 chr6 125156132 125156161 -24360876 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1539 1105 66 0 7 chr6 125156161 125156298 -24360739 - B1_Mus2 SINE Alu -10 137 2 4 1539 928 103 8 15 chr6 125156318 125156463 -24360574 - B1_Mus2 SINE Alu -1 146 5 4 1539 228 323 0 0 chr6 125156475 125156540 -24360497 + CT-rich Low_complexity Low_complexity 3 67 0 4 1539 2205 193 55 81 chr6 125156553 125157135 -24359902 - RMER2 LTR ERV1 0 567 1 4 1539 472 227 99 9 chr6 125157144 125157255 -24359782 - B1_Mur1 SINE Alu -27 122 2 4 1539 762 291 26 9 chr6 125157255 125157484 -24359553 - B4A SINE B4 -59 233 1 4 1539 227 269 0 0 chr6 125157556 125157608 -24359429 + CT-rich Low_complexity Low_complexity 2 53 0 4 1539 240 282 110 84 chr6 125157652 125157685 -24359352 - YREP_Mm Unknown Unknown -1474 338 182 4 1539 899 92 0 0 chr6 125157685 125157805 -24359232 + B1_Mus1 SINE Alu 22 141 -7 4 1539 297 0 0 0 chr6 125157807 125157840 -24359197 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4 1539 396 0 0 0 chr6 125157914 125157958 -24359079 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1539 1120 73 0 0 chr6 125157958 125158094 -24358943 - B1_Mm SINE Alu -11 136 1 4 1539 899 186 220 0 chr6 125158121 125158298 -24358739 - B3 SINE B2 0 216 1 4 1539 249 33 0 0 chr6 125158531 125158561 -24358476 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1539 329 266 140 9 chr6 125158818 125158932 -24358105 - L1MB8 LINE L1 -12 6166 6038 4 1539 1787 165 42 50 chr6 125159157 125159534 -24357503 - ORR1D1 LTR MaLR 0 374 1 4 1539 542 261 94 12 chr6 125159852 125160098 -24356939 - L1MB8 LINE L1 -585 5599 5319 4 1539 1621 47 0 0 chr6 125160234 125160426 -24356611 - B2_Mm1a SINE B2 0 193 2 4 1539 403 231 64 18 chr6 125160433 125160543 -24356494 - L1MB8 LINE L1 -880 5266 5152 4 1539 907 212 91 0 chr6 125160543 125160741 -24356296 + B3 SINE B2 1 216 0 4 1539 231 114 0 0 chr6 125160755 125160790 -24356247 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1539 1308 120 10 8 chr6 125160796 125160999 -24356038 + B2_Mm2 SINE B2 2 215 -1 4 1539 183 42 0 0 chr6 125161015 125161039 -24355998 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1539 1216 194 130 100 chr6 125161104 125161465 -24355572 + ORR1D1 LTR MaLR 3 374 0 4 1539 437 148 0 12 chr6 125161535 125161617 -24355420 + CT-rich Low_complexity Low_complexity 3 83 0 4 1539 981 69 12 132 chr6 125161651 125161818 -24355219 - B1_Mm SINE Alu 0 147 1 4 1539 263 269 140 28 chr6 125162033 125162140 -24354897 - PB1 SINE Alu -4 123 5 4 1539 21 0 0 0 chr6 125162210 125162231 -24354806 + AT_rich Low_complexity Low_complexity 1 21 0 4 1539 432 0 0 0 chr6 125162231 125162279 -24354758 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1539 602 208 32 0 chr6 125162279 125162404 -24354633 - B3 SINE B2 -87 129 1 4 1539 532 334 84 52 chr6 125162471 125162928 -24354109 - L1MEd LINE L1 -1043 1464 580 4 1539 871 175 0 0 chr6 125163467 125163604 -24353433 + B1_Mus1 SINE Alu 4 140 -8 4 1539 549 282 141 103 chr6 125163822 125164067 -24352970 + Kanga1d DNA Tc2 93 329 -280 4 1539 1006 255 0 0 chr6 125164067 125164279 -24352758 + ID_B1 SINE B4 1 212 -12 4 1539 549 282 141 103 chr6 125164279 125164507 -24352530 + Kanga1d DNA Tc2 330 584 -25 4 1539 539 165 253 23 chr6 125164613 125164787 -24352250 + B3 SINE B2 1 214 -2 4 1539 806 184 6 0 chr6 125164805 125164979 -24352058 + (TA)n Simple_repeat Simple_repeat 2 176 0 4 1539 369 0 0 0 chr6 125164982 125165023 -24352014 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 4 1539 351 154 0 0 chr6 125166553 125166618 -24350419 + CT-rich Low_complexity Low_complexity 6 70 0 4 1539 908 178 0 0 chr6 125166624 125166770 -24350267 - B1_Mus2 SINE Alu -1 146 1 4 1539 278 28 0 27 chr6 125167321 125167358 -24349679 - U2 snRNA snRNA -152 36 1 4 1539 646 128 58 25 chr6 125167664 125167784 -24349253 + B1_Mur2 SINE Alu 23 146 -3 4 1539 189 0 0 0 chr6 125167793 125167814 -24349223 + (CAAAC)n Simple_repeat Simple_repeat 1 21 0 4 1539 252 0 0 0 chr6 125169719 125169747 -24347290 + (CCTG)n Simple_repeat Simple_repeat 1 28 0 4 1539 294 143 0 0 chr6 125170518 125170567 -24346470 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 4 1539 280 220 84 0 chr6 125172663 125172783 -24344254 - B3 SINE B2 -1 215 2 4 1539 807 150 8 0 chr6 125172870 125172997 -24344040 - B1_Mur4 SINE Alu -12 138 11 4 1539 817 224 45 77 chr6 125173028 125173250 -24343787 + B3 SINE B2 2 216 0 4 1539 621 221 67 7 chr6 125173268 125173418 -24343619 + B3 SINE B2 43 201 -15 4 1539 982 231 19 9 chr6 125173436 125173650 -24343387 - B3 SINE B2 0 216 1 4 1540 362 272 72 0 chr6 125174063 125174188 -24342849 - Lx5 LINE L1 0 7050 6917 4 1540 1688 26 0 5 chr6 125174224 125174418 -24342619 - B2_Mm1a SINE B2 0 193 1 4 1540 434 236 57 0 chr6 125175162 125175268 -24341769 - PB1D10 SINE Alu -1 116 5 4 1540 200 345 0 0 chr6 125175583 125175638 -24341399 + MIRc SINE MIR 92 146 -122 4 1540 416 239 78 17 chr6 125175642 125175757 -24341280 + PB1 SINE Alu 3 124 -3 4 1540 1005 200 40 0 chr6 125175805 125176005 -24341032 + B3 SINE B2 1 208 -8 4 1540 325 250 15 0 chr6 125176974 125177042 -24339995 - ID4 SINE ID -12 71 3 4 1540 371 265 18 97 chr6 125177144 125177257 -24339780 + RLTR18 LTR ERVK 1 104 -512 4 1540 816 274 124 134 chr6 125177285 125177815 -24339222 + RLTR18 LTR ERVK 92 616 0 4 1540 301 250 127 18 chr6 125179097 125179207 -24337830 + PB1 SINE Alu 5 126 -1 4 1540 303 265 59 0 chr6 125179214 125179282 -24337755 + ID2 SINE ID 1 72 -11 4 1540 240 217 18 28 chr6 125179830 125179939 -24337098 + (CAAA)n Simple_repeat Simple_repeat 2 109 0 4 1540 546 259 118 0 chr6 125179945 125180080 -24336957 + RSINE1 SINE B4 2 152 -13 4 1540 183 80 0 0 chr6 125180094 125180119 -24336918 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1540 183 129 0 0 chr6 125181096 125181127 -24335910 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1540 438 244 121 36 chr6 125182182 125182322 -24334715 - B4A SINE B4 -14 278 127 4 1540 220 219 0 0 chr6 125182466 125182507 -24334530 + CT-rich Low_complexity Low_complexity 3 43 0 4 1540 262 304 73 105 chr6 125182833 125182863 -24334174 - B2_Mm1t SINE B2 -7 186 153 4 1540 360 0 0 0 chr6 125182863 125182903 -24334134 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1540 590 286 9 42 chr6 125182903 125183063 -24333974 - B3 SINE B2 -41 152 2 4 1540 208 244 0 0 chr6 125183469 125183514 -24333523 + GA-rich Low_complexity Low_complexity 2 46 0 4 1540 290 320 199 24 chr6 125183954 125184165 -24332872 - B4 SINE B4 -43 249 2 4 1540 249 274 0 49 chr6 125184829 125184952 -24332085 + C-rich Low_complexity Low_complexity 1 117 0 4 1540 858 162 0 42 chr6 125185057 125185199 -24331838 - B1_Mus2 SINE Alu -8 139 4 4 1540 383 186 23 0 chr6 125185423 125185509 -24331528 + (TATATG)n Simple_repeat Simple_repeat 1 88 0 4 1540 408 259 71 43 chr6 125185956 125186097 -24330940 - RSINE1 SINE B4 -16 149 5 4 1540 631 172 0 0 chr6 125186103 125186235 -24330802 - PB1 SINE Alu -2 125 7 4 1540 688 239 12 154 chr6 125187428 125187675 -24329362 - ID_B1 SINE B4 -9 215 4 4 1540 465 66 0 0 chr6 125187866 125187927 -24329110 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1540 388 308 160 104 chr6 125187929 125188197 -24328840 - B4 SINE B4 -7 285 3 4 1540 2324 120 56 12 chr6 125189104 125189490 -24327547 + ORR1B1 LTR MaLR 1 394 0 4 1540 277 330 56 46 chr6 125189949 125190057 -24326980 + PB1 SINE Alu 1 109 -18 4 1540 245 273 26 0 chr6 125190145 125190222 -24326815 - L1M LINE L1 -793 5390 5312 4 1540 478 211 0 11 chr6 125190498 125190589 -24326448 - B1_Mus2 SINE Alu -56 91 2 4 1540 280 303 22 11 chr6 125190510 125190600 -24326437 - B4A SINE B4 -126 166 76 4 1540 526 279 116 0 chr6 125190754 125190883 -24326154 - MTD LTR MaLR -137 282 139 4 1540 239 253 38 0 chr6 125190883 125190962 -24326075 - Lx8 LINE L1 -1075 6398 6317 4 1540 285 232 10 39 chr6 125191226 125191329 -24325708 + (TA)n Simple_repeat Simple_repeat 2 101 0 4 1540 241 178 80 100 chr6 125191329 125191429 -24325608 + RLTR22_Mur LTR ERVK 1306 1403 -445 4 1540 929 125 59 0 chr6 125191438 125191574 -24325463 + B1_Mus1 SINE Alu 1 144 -4 4 1540 1235 22 0 39 chr6 125192004 125192338 -24324699 + (CCAA)n Simple_repeat Simple_repeat 1 320 0 4 1540 353 132 0 0 chr6 125192345 125192398 -24324639 + ORR1A3 LTR MaLR 274 326 0 4 1540 24 32 0 0 chr6 125193311 125193342 -24323695 + AT_rich Low_complexity Low_complexity 1 31 0 4 1540 428 198 98 11 chr6 125193343 125193435 -24323602 - B1_Mur1 SINE Alu -10 139 40 4 1540 1711 152 74 99 chr6 125193565 125193929 -24323108 - ORR1B1 LTR MaLR 0 394 40 4 1540 481 233 27 150 chr6 125194355 125194542 -24322495 + RSINE1 SINE B4 1 164 -1 4 1540 990 193 242 14 chr6 125194577 125194866 -24322171 + Lx8 LINE L1 6700 7054 -419 4 1540 2939 153 78 32 chr6 125194934 125195497 -24321540 - RMER19B LTR ERVK 0 902 54 4 1540 395 127 0 27 chr6 125195502 125195575 -24321462 + (TATG)n Simple_repeat Simple_repeat 1 71 0 4 1540 491 218 9 52 chr6 125195600 125195716 -24321321 - ORR1B2 LTR MaLR -234 133 23 5 1540 892 69 0 0 chr6 125195738 125195854 -24321183 - B1_Mus1 SINE Alu 0 148 33 5 1540 1160 181 19 5 chr6 125195862 125196068 -24320969 - B3 SINE B2 -6 210 2 5 1540 506 16 16 0 chr6 125196115 125196178 -24320859 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 5 1540 405 0 0 0 chr6 125196402 125196447 -24320590 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1540 554 275 6 76 chr6 125196554 125196743 -24320294 - ID_B1 SINE B4 -46 246 74 5 1540 235 192 56 37 chr6 125196970 125197024 -24320013 + PB1D10 SINE Alu 63 117 0 5 1540 259 250 31 0 chr6 125197056 125197120 -24319917 - RSINE1 SINE B4 -96 69 4 5 1540 671 235 8 0 chr6 125197124 125197256 -24319781 - ID_B1 SINE B4 0 224 92 5 1540 295 304 130 5 chr6 125197265 125197457 -24319580 - LTR83 LTR ERVL -445 335 120 5 1540 973 177 65 5 chr6 125197475 125197674 -24319363 - B3 SINE B2 -4 212 2 5 1540 183 42 0 0 chr6 125197792 125197816 -24319221 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 1540 445 242 22 82 chr6 125198047 125198182 -24318855 - ID_B1 SINE B4 -11 213 87 5 1540 183 225 0 0 chr6 125198945 125199016 -24318021 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1540 2989 44 57 0 chr6 125199019 125199386 -24317651 - RLTR10 LTR ERVK -2 388 1 5 1540 8331 25 6 2 chr6 125199386 125200379 -24316658 - RLTR10-int LTR ERVK -1 1986 990 5 1540 475 329 40 28 chr6 125200526 125200848 -24316189 - RLTR10-int LTR ERVK -5479 1063 738 5 1540 4106 46 4 1 chr6 125200904 125201780 -24315257 - RLTR10-int LTR ERVK -995 992 41 5 1540 3073 40 43 0 chr6 125201792 125202164 -24314873 - RLTR10 LTR ERVK -2 388 1 5 1540 243 324 15 0 chr6 125202219 125202287 -24314750 + ID4_ SINE ID 9 77 -6 5 1540 1076 253 69 17 chr6 125202410 125202700 -24314337 - MTD LTR MaLR -108 311 7 5 1540 242 219 79 79 chr6 125202814 125202903 -24314134 - L1M5 LINE L1 -473 5706 5618 5 1540 677 270 181 8 chr6 125202913 125203144 -24313893 - MTEa LTR MaLR -6 373 102 5 1540 1600 218 16 47 chr6 125203144 125203525 -24313512 - ORR1D2 LTR MaLR -1 369 1 5 1540 677 303 79 4 chr6 125203525 125203618 -24313419 - MTEa LTR MaLR -278 101 2 5 1540 553 310 166 14 chr6 125203620 125203792 -24313245 - MTEa-int LTR MaLR 0 1370 1192 5 1540 270 0 0 0 chr6 125203792 125203822 -24313215 + (TAA)n Simple_repeat Simple_repeat 1 30 0 5 1540 668 314 82 43 chr6 125203822 125204078 -24312959 - MTE-int LTR MaLR -229 1351 1086 5 1540 498 291 5 58 chr6 125205235 125205443 -24311594 - B3A SINE B2 -1 197 1 5 1540 21 0 0 0 chr6 125206590 125206611 -24310426 + AT_rich Low_complexity Low_complexity 1 21 0 5 1540 2879 125 28 6 chr6 125207086 125207552 -24309485 - RLTR31B_Mm LTR ERVK -81 476 1 5 1540 243 0 0 0 chr6 125208403 125208430 -24308607 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1540 388 352 48 27 chr6 125208432 125208578 -24308459 + RSINE1 SINE B4 1 149 -16 5 1540 1533 283 72 9 chr6 125208815 125209261 -24307776 - MTE-int LTR MaLR -500 1080 607 5 1540 1011 130 0 0 chr6 125209296 125209442 -24307595 - B1_Mus1 SINE Alu -1 147 2 5 1540 510 214 52 73 chr6 125209322 125209458 -24307579 - MT2B LTR ERVL -323 278 146 5 1540 245 289 32 45 chr6 125209335 125209491 -24307546 - MTEb-int LTR MaLR -755 754 601 5 1540 230 29 59 0 chr6 125209630 125209664 -24307373 + (CCCCCA)n Simple_repeat Simple_repeat 3 38 0 5 1540 1510 33 60 0 chr6 125209692 125209874 -24307163 - B2_Mm1a SINE B2 0 193 1 5 1540 2725 174 73 19 chr6 125210020 125210553 -24306484 + RMER19B LTR ERVK 68 629 -273 5 1540 779 79 61 0 chr6 125211374 125211488 -24305549 - B1_Mur4 SINE Alu -29 121 1 5 1540 1959 304 40 14 chr6 125211488 125212068 -24304969 - MTEb-int LTR MaLR -985 595 1 5 1540 432 281 25 62 chr6 125212068 125212328 -24304709 - MTEb LTR MaLR -17 362 51 5 1540 519 17 0 0 chr6 125212346 125212406 -24304631 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1540 398 250 70 136 chr6 125212422 125212491 -24304546 - L1M4 LINE L1 -699 5475 5416 5 1540 975 31 148 0 chr6 125212491 125212619 -24304418 - B1_Mus2 SINE Alu 0 147 1 5 1540 421 269 71 48 chr6 125212619 125212787 -24304250 - L1M4 LINE L1 -749 5429 5258 5 1540 248 310 58 70 chr6 125212925 125212989 -24304048 + B4A SINE B4 21 82 -210 5 1540 223 244 29 135 chr6 125212989 125213093 -24303944 + PB1D7 SINE Alu 3 95 -25 5 1540 754 229 11 28 chr6 125213108 125213288 -24303749 + B3A SINE B2 20 196 -2 5 1540 1079 102 0 7 chr6 125213295 125213443 -24303594 + B1_Mus2 SINE Alu 1 147 0 5 1540 198 103 0 0 chr6 125213554 125213583 -24303454 + (TAA)n Simple_repeat Simple_repeat 1 29 0 5 1540 727 255 140 22 chr6 125213661 125213844 -24303193 - L1M4 LINE L1 -979 5167 4978 5 1540 1253 41 0 0 chr6 125213844 125213989 -24303048 - B1_Mm SINE Alu -1 146 2 5 1540 727 255 140 22 chr6 125213989 125214206 -24302831 - L1M4 LINE L1 -1169 4977 4720 5 1540 468 257 9 17 chr6 125214207 125214322 -24302715 + PB1D7 SINE Alu 1 114 -6 5 1540 253 302 161 28 chr6 125214322 125214349 -24302688 + B4 SINE B4 86 246 -46 5 1540 874 240 43 25 chr6 125214398 125214413 -24302624 - L1M4 LINE L1 -1439 4707 4694 5 1540 720 262 0 12 chr6 125214413 125214579 -24302458 - RSINE1 SINE B4 0 165 2 5 1540 874 240 43 25 chr6 125214579 125214888 -24302149 - L1M4 LINE L1 -1453 4693 4377 5 1540 756 181 15 22 chr6 125214912 125215048 -24301989 - B1_Mur3 SINE Alu 0 149 15 5 1540 419 293 58 36 chr6 125215058 125215069 -24301968 - ID_B1 SINE B4 -2 222 213 5 1540 228 67 0 0 chr6 125215069 125215099 -24301938 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 5 1540 419 293 58 36 chr6 125215099 125215225 -24301812 - ID_B1 SINE B4 -12 212 82 5 1540 262 259 89 36 chr6 125215254 125215366 -24301671 - PB1D7 SINE Alu -2 118 1 5 1540 233 214 0 0 chr6 125215771 125215813 -24301224 - B1F2 SINE Alu -107 42 1 5 1540 296 111 348 35 chr6 125216576 125216688 -24300349 - B2_Mm2 SINE B2 -2 193 47 5 1540 761 62 10 0 chr6 125216735 125216832 -24300205 - B2_Mm1t SINE B2 -14 179 82 5 1540 344 246 15 92 chr6 125216850 125216980 -24300057 - PB1D7 SINE Alu 0 120 1 5 1540 282 217 0 62 chr6 125217245 125217309 -24299728 - B1F1 SINE Alu 0 149 90 5 1540 23 0 0 0 chr6 125217327 125217350 -24299687 + AT_rich Low_complexity Low_complexity 1 23 0 5 1540 426 273 17 47 chr6 125217464 125217596 -24299441 - PB1D10 SINE Alu -8 140 9 5 1540 1709 136 75 4 chr6 125217747 125218027 -24299010 - MTC LTR MaLR -1 420 121 5 1540 1185 98 0 0 chr6 125218115 125218278 -24298759 - B2_Mm2 SINE B2 -31 164 2 5 1540 305 160 11 0 chr6 125218278 125218337 -24298700 - MTC LTR MaLR -300 96 35 5 1540 575 296 57 33 chr6 125218337 125218638 -24298399 - L1_Mur3 LINE L1 -2615 3265 2958 5 1540 1713 21 0 0 chr6 125218643 125218836 -24298201 - B2_Mm1a SINE B2 0 193 1 5 1540 768 43 0 0 chr6 125218848 125218941 -24298096 - BC1_Mm scRNA scRNA -59 93 1 5 1540 2182 246 58 30 chr6 125218942 125219169 -24297868 - L1_Mur3 LINE L1 -2910 2970 2756 5 1540 1205 85 61 17 chr6 125219169 125219349 -24297688 - B2_Mm2 SINE B2 -6 189 2 5 1540 2182 246 58 30 chr6 125219349 125219921 -24297116 - L1_Mur3 LINE L1 -3125 2755 2149 5 1540 621 99 11 0 chr6 125219934 125220025 -24297012 - MTC LTR MaLR -163 258 167 5 1540 284 151 132 0 chr6 125220021 125220074 -24296963 - MTC LTR MaLR -359 60 1 5 1540 498 351 137 27 chr6 125220384 125220756 -24296281 - MLT2F LTR ERVL -245 418 6 5 1540 1469 253 93 3 chr6 125220922 125221299 -24295738 - MTD LTR MaLR -8 411 1 5 1540 713 134 103 15 chr6 125222349 125222485 -24294552 - B1_Mus1 SINE Alu 0 148 1 5 1540 402 39 0 0 chr6 125222610 125222662 -24294375 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1540 737 201 62 43 chr6 125223041 125223249 -24293788 + B3 SINE B2 2 213 -3 5 1540 273 109 0 0 chr6 125223418 125223464 -24293573 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 5 1540 286 260 41 28 chr6 125223505 125223614 -24293423 - ID_B1 SINE B4 -53 171 65 5 1540 348 312 92 23 chr6 125223796 125223962 -24293075 - L1M4b LINE L1 -4356 2978 2801 5 1540 723 173 28 41 chr6 125223962 125224107 -24292930 + B1_Mus2 SINE Alu 2 144 -3 5 1540 789 231 40 15 chr6 125224119 125224317 -24292720 - B3 SINE B2 -10 206 4 5 1540 696 234 45 6 chr6 125224641 125224816 -24292221 + MTE2b LTR MaLR 1 182 -197 5 1540 383 303 35 14 chr6 125224816 125224960 -24292077 + B3 SINE B2 1 147 -69 5 1540 898 80 0 0 chr6 125224983 125225108 -24291929 - B2_Mm2 SINE B2 -70 125 1 5 1540 575 250 42 80 chr6 125225138 125225310 -24291727 + MTE2b LTR MaLR 171 336 -43 5 1540 776 82 311 26 chr6 125225310 125225461 -24291576 - B2_Mm2 SINE B2 0 195 2 5 1540 575 250 42 80 chr6 125225461 125225501 -24291536 + MTE2b LTR MaLR 337 375 -4 5 1540 1862 118 82 7 chr6 125226564 125226870 -24290167 - ORR1A4 LTR MaLR 0 329 1 5 1540 236 294 47 0 chr6 125227081 125227096 -24289941 + MT2B LTR ERVL 158 243 -355 5 1540 299 164 149 0 chr6 125227096 125227163 -24289874 + PB1D7 SINE Alu 11 87 -33 5 1540 2168 57 57 0 chr6 125228982 125229282 -24287755 + L1_Mus2 LINE L1 6250 6566 0 5 1540 420 20 0 0 chr6 125229652 125229701 -24287336 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1540 1236 51 96 0 chr6 125230187 125230365 -24286672 + B2_Mm2 SINE B2 1 195 0 5 1540 916 235 5 35 chr6 125230401 125230604 -24286433 + B3 SINE B2 1 197 -19 5 1540 351 230 18 91 chr6 125230641 125230751 -24286286 + MT2B LTR ERVL 156 257 -344 5 1540 791 146 15 8 chr6 125230656 125230787 -24286250 + B1_Mus2 SINE Alu 9 140 -7 5 1540 1957 150 100 18 chr6 125231914 125232295 -24284742 + MTC LTR MaLR 10 421 0 5 1540 211 333 0 0 chr6 125233139 125233193 -24283844 + B1F1 SINE Alu 3 56 -93 5 1540 405 272 9 7 chr6 125233271 125233379 -24283658 - PB1D7 SINE Alu -8 109 1 5 1540 29 60 0 0 chr6 125233824 125233874 -24283163 + AT_rich Low_complexity Low_complexity 1 50 0 5 1540 296 243 35 61 chr6 125233874 125233970 -24283067 - B1F1 SINE Alu -57 92 1 5 1540 511 234 127 41 chr6 125234107 125234352 -24282685 + Charlie12 DNA MER1_type 663 928 -1945 5 1540 494 190 238 0 chr6 125234382 125234603 -24282434 + MTD LTR MaLR 102 374 -5 5 1540 449 233 115 83 chr6 125234896 125235088 -24281949 + B3A SINE B2 1 198 0 5 1540 316 228 128 26 chr6 125236621 125236738 -24280299 - B1F1 SINE Alu -8 141 13 5 1540 180 0 0 0 chr6 125236859 125236879 -24280158 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1540 466 295 104 10 chr6 125236879 125237071 -24279966 - ID_B1 SINE B4 -14 210 1 5 1540 231 194 210 0 chr6 125237833 125237895 -24279142 - PB1 SINE Alu -47 80 6 6 1540 363 200 0 26 chr6 125237909 125237986 -24279051 - MTE2b LTR MaLR -52 327 253 6 1540 849 276 9 0 chr6 125238000 125238214 -24278823 - ID_B1 SINE B4 -1 223 8 6 1540 960 236 222 47 chr6 125238241 125238584 -24278453 + MTD LTR MaLR 1 403 -16 6 1540 1068 256 175 43 chr6 125238933 125239471 -24277566 - RLTR18 LTR ERVK -7 609 1 6 1540 258 32 0 0 chr6 125239586 125239617 -24277420 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 6 1540 189 74 0 0 chr6 125239777 125239804 -24277233 + (CAT)n Simple_repeat Simple_repeat 1 27 0 6 1540 1897 269 68 16 chr6 125239850 125240413 -24276624 + MTE-int LTR MaLR 1 592 -988 6 1540 1084 43 0 0 chr6 125240415 125240556 -24276481 + B1_Mus2 SINE Alu 6 146 -1 6 1540 309 149 0 0 chr6 125240557 125240624 -24276413 + (CGAA)n Simple_repeat Simple_repeat 2 68 0 6 1540 535 318 42 89 chr6 125240632 125240827 -24276210 + MTE-int LTR MaLR 580 765 -815 6 1540 938 166 68 72 chr6 125240827 125241048 -24275989 + URR1A DNA MER1_type 5 224 -2 6 1540 535 318 42 89 chr6 125241048 125241111 -24275926 + MTE-int LTR MaLR 766 826 -754 6 1540 985 319 86 16 chr6 125241109 125241551 -24275486 - MTE-int LTR MaLR -450 1130 629 6 1540 597 259 103 23 chr6 125241673 125241934 -24275103 + L1MC1 LINE L1 5018 5299 -847 6 1540 264 218 0 0 chr6 125241935 125241990 -24275047 + B1_Mus1 SINE Alu 1 55 -93 6 1540 264 0 0 159 chr6 125241992 125242124 -24274913 + (CAGAG)n Simple_repeat Simple_repeat 5 115 0 6 1540 689 139 0 0 chr6 125242127 125242235 -24274802 + B1_Mur4 SINE Alu 43 150 0 6 1540 1482 266 81 23 chr6 125242356 125242911 -24274126 + L1MC1 LINE L1 5385 5971 -362 6 1540 430 226 169 38 chr6 125242980 125243164 -24273873 - L1MC LINE L1 -863 5470 5263 6 1540 678 74 29 7 chr6 125243166 125243274 -24273763 - ORR1A3 LTR MaLR 0 378 224 6 1540 25 31 0 0 chr6 125243332 125243364 -24273673 + AT_rich Low_complexity Low_complexity 1 32 0 6 1540 423 309 112 35 chr6 125243364 125243461 -24273576 + L1MC1 LINE L1 5961 6061 -283 6 1540 2749 205 100 16 chr6 125243461 125244141 -24272896 + RMER19A LTR ERVK 1 737 0 6 1540 423 309 112 35 chr6 125244141 125244382 -24272655 + L1MC1 LINE L1 6062 6325 -19 6 1540 335 204 102 51 chr6 125244439 125244537 -24272500 - Lx4B LINE L1 -4 7054 6952 6 1540 918 241 94 0 chr6 125244761 125245027 -24272010 + RMER21B LTR ERV1 275 565 -277 6 1540 896 244 19 0 chr6 125245122 125245331 -24271706 + RodERV21-int LTR ERV1 1 213 -4778 6 1540 798 242 40 58 chr6 125245371 125245595 -24271442 - RLTR11A2 LTR ERVK -307 220 1 6 1540 3392 202 21 22 chr6 125245726 125246406 -24270631 + RodERV21-int LTR ERV1 4143 4821 -170 6 1540 513 198 18 26 chr6 125246406 125246520 -24270517 + RMER4B LTR ERVK 339 451 -134 6 1540 572 245 256 4 chr6 125246555 125246789 -24270248 + RMER21B LTR ERV1 275 567 -275 6 1540 190 326 162 5 chr6 125246887 125247109 -24269928 + L2 LINE L2 2072 2328 -1091 6 1540 195 139 0 0 chr6 125247399 125247435 -24269602 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1540 323 242 95 0 chr6 125247450 125247545 -24269492 - L1ME3B LINE L1 -256 5984 5881 6 1540 336 314 0 0 chr6 125247634 125247736 -24269301 + PB1D10 SINE Alu 3 104 -13 6 1540 205 214 28 28 chr6 125247736 125247808 -24269229 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1540 248 316 0 84 chr6 125247833 125247940 -24269097 + BC1_Mm scRNA scRNA 4 101 -51 6 1540 733 237 12 138 chr6 125247969 125248120 -24268917 + B3 SINE B2 1 127 -89 6 1540 1211 34 0 0 chr6 125248120 125248267 -24268770 - B1_Mus1 SINE Alu 0 148 2 6 1540 733 237 12 138 chr6 125248267 125248355 -24268682 + B3 SINE B2 128 210 -6 6 1540 1182 35 7 0 chr6 125248375 125248520 -24268517 + B1_Mus2 SINE Alu 2 147 0 6 1540 1414 58 0 16 chr6 125248557 125248751 -24268286 + B2_Mm1a SINE B2 2 192 -1 6 1540 519 267 34 20 chr6 125248761 125248910 -24268127 + RSINE1 SINE B4 3 153 -12 6 1540 888 173 0 18 chr6 125248915 125249086 -24267951 + RMER15 LTR ERVL 18 185 -390 6 1540 336 195 24 72 chr6 125249086 125249169 -24267868 + RMER15 LTR ERVL 298 376 -199 6 1540 2094 108 81 0 chr6 125249163 125249498 -24267539 + ORR1B1 LTR MaLR 27 388 -6 6 1540 990 129 0 35 chr6 125249529 125249698 -24267339 + RMER15 LTR ERVL 413 575 0 6 1540 356 0 23 0 chr6 125249810 125249854 -24267183 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1540 333 294 176 0 chr6 125250053 125250189 -24266848 - RSINE1 SINE B4 -4 161 2 6 1540 362 291 0 86 chr6 125250233 125250372 -24266665 + RSINE1 SINE B4 3 129 -36 6 1540 343 216 27 13 chr6 125250430 125250505 -24266532 + PB1D10 SINE Alu 9 84 -33 6 1540 301 231 77 0 chr6 125250547 125250612 -24266425 + ID4_ SINE ID 5 74 -9 6 1540 754 240 29 0 chr6 125250709 125250880 -24266157 + B3A SINE B2 5 180 -18 6 1540 23 33 0 0 chr6 125250990 125251020 -24266017 + AT_rich Low_complexity Low_complexity 1 30 0 6 1540 222 118 0 0 chr6 125251024 125251058 -24265979 + B3 SINE B2 1 34 -182 6 1540 475 165 10 10 chr6 125251095 125251193 -24265844 - RLTR28 LTR ERVL 0 524 427 6 1540 362 85 378 0 chr6 125251194 125251276 -24265761 + B1_Mur4 SINE Alu 14 126 -24 6 1540 459 0 0 0 chr6 125251279 125251330 -24265707 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1540 1992 144 25 74 chr6 125251331 125251486 -24265551 - RLTR28 LTR ERVL -108 416 282 6 1540 1710 168 75 21 chr6 125251486 125251875 -24265162 + RMER17C LTR ERVK 1 410 0 6 1540 1992 144 25 74 chr6 125251875 125252153 -24264884 - RLTR28 LTR ERVL -243 281 4 6 1540 570 278 78 10 chr6 125253029 125253222 -24263815 - B3 SINE B2 -2 214 9 6 1540 1518 184 169 8 chr6 125253275 125253636 -24263401 - MTD LTR MaLR 0 419 1 6 1540 372 279 108 0 chr6 125253668 125253797 -24263240 - B1F2 SINE Alu -5 144 2 6 1540 486 202 0 73 chr6 125254023 125254146 -24262891 + ID_B1 SINE B4 111 224 0 6 1540 600 231 13 20 chr6 125254262 125254412 -24262625 + B1_Mur1 SINE Alu 1 149 0 6 1540 1368 87 0 0 chr6 125254658 125255122 -24261915 + (CAGG)n Simple_repeat Simple_repeat 1 464 0 6 1540 353 55 36 0 chr6 125255183 125255238 -24261799 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 6 1540 381 93 0 0 chr6 125255243 125255297 -24261740 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1540 784 135 0 139 chr6 125255863 125256035 -24261002 - B1_Mus1 SINE Alu 0 148 1 6 1540 197 286 167 8 chr6 125256318 125256438 -24260599 + MIR SINE MIR 90 228 -34 6 1540 971 17 8 0 chr6 125257662 125257779 -24259258 + (CCCCAG)n Simple_repeat Simple_repeat 6 123 0 6 1540 272 320 103 25 chr6 125258241 125258446 -24258591 + L2a LINE L2 2959 3187 -239 6 1540 1301 104 16 0 chr6 125258446 125258638 -24258399 + B2_Mm2 SINE B2 1 195 0 6 1540 272 356 40 40 chr6 125258638 125258683 -24258354 + L2a LINE L2 3188 3228 -198 6 1540 360 0 0 0 chr6 125258702 125258742 -24258295 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1540 602 221 14 14 chr6 125258759 125258906 -24258131 - B1F SINE Alu 0 149 3 6 1540 207 0 0 0 chr6 125259078 125259101 -24257936 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 6 1540 241 328 118 37 chr6 125260120 125260194 -24256843 + MIR3 SINE MIR 5 75 -133 6 1540 1200 41 0 0 chr6 125260194 125260341 -24256696 - B1_Mm SINE Alu 0 147 1 6 1540 241 328 118 37 chr6 125260341 125260453 -24256584 + MIR3 SINE MIR 76 206 -2 6 1540 405 0 0 0 chr6 125260609 125260654 -24256383 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1540 240 226 226 0 chr6 125260898 125260982 -24256055 - PB1D10 SINE Alu -12 105 3 6 1540 1005 79 0 0 chr6 125261073 125261213 -24255824 + (CA)n Simple_repeat Simple_repeat 2 141 0 6 1540 218 326 91 10 chr6 125261213 125261312 -24255725 + MIRb SINE MIR 92 198 -70 6 1540 493 184 48 10 chr6 125261721 125261825 -24255212 - PB1D7 SINE Alu -12 108 1 6 1540 21 36 0 0 chr6 125263820 125263848 -24253189 + GC_rich Low_complexity Low_complexity 1 28 0 6 1540 1045 96 12 29 chr6 125265351 125265522 -24251515 - B2_Mm1a SINE B2 -7 186 19 6 1540 366 23 0 0 chr6 125265823 125265866 -24251171 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1540 702 175 0 0 chr6 125265939 125266065 -24250972 - B1_Mus1 SINE Alu -11 137 12 6 1540 472 340 63 5 chr6 125266692 125266899 -24250138 + MER20 DNA MER1_type 1 219 0 6 1540 293 258 237 0 chr6 125267324 125267421 -24249616 + PB1D7 SINE Alu 1 120 0 6 1540 225 0 0 0 chr6 125267857 125267882 -24249155 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1540 222 288 45 0 chr6 125268066 125268132 -24248905 - MIR3 SINE MIR -37 171 103 6 1540 249 57 0 0 chr6 125268146 125268181 -24248856 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1540 457 176 222 0 chr6 125268204 125268312 -24248725 - B1_Mur2 SINE Alu -17 132 1 6 1540 448 257 80 0 chr6 125268432 125268545 -24248492 + B1F1 SINE Alu 17 138 -11 6 1540 351 214 0 0 chr6 125268786 125268856 -24248181 + PB1D7 SINE Alu 35 104 -16 6 1540 396 218 0 0 chr6 125268862 125268995 -24248042 + (TG)n Simple_repeat Simple_repeat 1 133 0 6 1540 239 324 0 0 chr6 125272411 125272479 -24244558 + ID2 SINE ID 13 80 -3 6 1540 256 218 51 13 chr6 125273409 125273488 -24243549 - MIR SINE MIR -96 166 85 6 1540 283 132 37 19 chr6 125274111 125274165 -24242872 - PB1 SINE Alu -2 125 71 6 1540 244 307 0 26 chr6 125274196 125274273 -24242764 - MIRc SINE MIR -116 152 78 6 1540 454 248 97 9 chr6 125274367 125274481 -24242556 + B1_Mur2 SINE Alu 2 125 -24 6 1540 299 298 114 0 chr6 125274585 125274716 -24242321 - MIR SINE MIR -64 198 53 6 1540 311 324 26 46 chr6 125275262 125275414 -24241623 + B1F2 SINE Alu 1 149 0 6 1540 227 298 47 115 chr6 125275732 125275880 -24241157 - RSINE1 SINE B4 0 165 28 6 1540 198 91 0 0 chr6 125275880 125275913 -24241124 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1540 1226 99 28 0 chr6 125276331 125276513 -24240524 - B2_Mm2 SINE B2 -7 188 2 6 1540 855 162 14 0 chr6 125276641 125276789 -24240248 + B1_Mur4 SINE Alu 1 150 0 6 1540 193 324 135 54 chr6 125278315 125278426 -24238611 - MIRb SINE MIR -65 203 84 6 1540 610 184 10 0 chr6 125278962 125279065 -24237972 - PB1D9 SINE Alu -16 104 1 6 1540 426 20 0 0 chr6 125279127 125279178 -24237859 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1540 727 149 0 0 chr6 125279180 125279294 -24237743 - B1_Mur1 SINE Alu -6 143 30 7 1540 625 263 72 108 chr6 125279303 125279389 -24237648 - B3 SINE B2 -2 214 128 7 1540 1435 99 16 0 chr6 125279389 125279581 -24237456 + B2_Mm2 SINE B2 1 195 0 7 1540 625 263 72 108 chr6 125279581 125279716 -24237321 - B3 SINE B2 -89 127 1 7 1540 269 284 32 54 chr6 125279717 125279810 -24237227 - L1M4 LINE L1 -1396 4750 4660 7 1540 339 258 9 93 chr6 125279820 125279927 -24237110 + PB1D10 SINE Alu 9 107 -41 7 1540 588 240 75 21 chr6 125280146 125280333 -24236704 - B3A SINE B2 -1 197 1 7 1540 253 255 92 0 chr6 125280340 125280438 -24236599 - L1M4 LINE L1 -1769 4377 4271 7 1540 726 44 0 0 chr6 125281316 125281406 -24235631 + (TGAA)n Simple_repeat Simple_repeat 1 90 0 7 1540 204 135 0 0 chr6 125281578 125281615 -24235422 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1540 225 245 0 0 chr6 125281615 125281668 -24235369 - ID4_ SINE ID -23 60 8 7 1540 233 360 16 70 chr6 125282607 125282792 -24234245 - L2a LINE L2 -5 3421 3247 7 1540 276 316 8 149 chr6 125283530 125283664 -24233373 - MLT1A0 LTR MaLR -1 364 250 7 1540 1027 231 9 28 chr6 125283975 125284193 -24232844 + B3 SINE B2 1 214 -2 7 1540 219 336 9 0 chr6 125284306 125284416 -24232621 + CT-rich Low_complexity Low_complexity 3 113 0 7 1540 269 243 67 13 chr6 125284417 125284492 -24232545 - ID4 SINE ID 0 83 5 7 1540 694 248 37 18 chr6 125284521 125284739 -24232298 - L1MB7 LINE L1 -42 6142 5921 7 1540 807 206 0 0 chr6 125284796 125284971 -24232066 + (TA)n Simple_repeat Simple_repeat 1 175 0 7 1540 340 188 34 45 chr6 125284993 125285082 -24231955 - L1MB7 LINE L1 -265 5913 5826 7 1540 329 306 118 0 chr6 125285177 125285363 -24231674 - L1MB7 LINE L1 -492 5686 5479 7 1540 288 77 0 0 chr6 125285365 125285404 -24231633 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1540 259 250 0 0 chr6 125285478 125285534 -24231503 - RSINE1 SINE B4 -106 59 4 7 1540 448 226 55 83 chr6 125285762 125285907 -24231130 - B1F SINE Alu -6 143 3 7 1540 723 243 21 0 chr6 125285976 125286120 -24230917 - RSINE1 SINE B4 -16 149 3 7 1540 1493 77 0 5 chr6 125287309 125287504 -24229533 + B2_Mm2 SINE B2 1 194 -1 7 1540 537 80 0 0 chr6 125289473 125289548 -24227489 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 1540 319 143 0 18 chr6 125289792 125289849 -24227188 - HAL1-3A_ME LINE L1 -828 2030 1975 7 1540 787 180 6 21 chr6 125289851 125290197 -24226840 + (TG)n Simple_repeat Simple_repeat 1 340 0 7 1540 330 273 0 69 chr6 125290717 125290906 -24226131 + C-rich Low_complexity Low_complexity 4 179 0 7 1540 255 295 73 10 chr6 125290914 125291010 -24226027 - MIR3 SINE MIR -7 201 100 7 1540 825 199 7 0 chr6 125291098 125291239 -24225798 - B1_Mur2 SINE Alu -6 143 2 7 1540 476 16 16 0 chr6 125291411 125291472 -24225565 + (TC)n Simple_repeat Simple_repeat 2 63 0 7 1540 324 0 0 0 chr6 125291474 125291510 -24225527 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1540 366 332 160 4 chr6 125291720 125291983 -24225054 - L1MB7 LINE L1 -106 6078 5775 7 1540 334 192 20 130 chr6 125291986 125292110 -24224927 - PB1D7 SINE Alu -7 113 1 7 1540 370 255 431 11 chr6 125292112 125292322 -24224715 - L1M4 LINE L1 -464 5776 5483 7 1540 309 51 0 0 chr6 125292322 125292361 -24224676 + (TTTTG)n Simple_repeat Simple_repeat 5 43 0 7 1540 370 284 128 17 chr6 125292361 125292405 -24224632 - L1M4 LINE L1 -702 5482 5429 7 1540 191 278 52 148 chr6 125294825 125294960 -24222077 + L2c LINE L2 3261 3382 -5 7 1540 446 125 20 111 chr6 125295578 125295677 -24221360 - B1_Mur2 SINE Alu -47 102 13 7 1540 199 242 129 0 chr6 125296136 125296198 -24220839 - MIR SINE MIR -97 111 42 7 1540 1189 202 0 0 chr6 125296496 125296699 -24220338 - B3 SINE B2 -9 207 5 7 1540 1952 102 2 125 chr6 125296699 125296796 -24220241 - RMER10B LTR ERVL -6 392 316 7 1540 1314 102 43 0 chr6 125296796 125296982 -24220055 + B2_Mm2 SINE B2 1 194 -1 7 1540 1952 102 2 125 chr6 125296982 125297299 -24219738 - RMER10B LTR ERVL -83 315 29 7 1540 956 102 73 0 chr6 125297300 125297437 -24219600 + B1_Mus1 SINE Alu 2 148 0 7 1540 203 79 0 26 chr6 125297439 125297478 -24219559 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 1540 240 54 0 26 chr6 125297484 125297522 -24219515 - RMER10B LTR ERVL -361 37 1 7 1540 1118 199 55 0 chr6 125297557 125297758 -24219279 - B3 SINE B2 -2 214 3 7 1540 414 69 0 0 chr6 125298163 125298221 -24218816 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1540 625 194 45 30 chr6 125298912 125299045 -24217992 + ID_B1 SINE B4 79 213 -11 7 1540 251 259 16 65 chr6 125299673 125299797 -24217240 + C-rich Low_complexity Low_complexity 3 120 0 7 1540 249 420 51 11 chr6 125301178 125301354 -24215683 + MIR SINE MIR 31 213 -49 7 1540 466 230 39 23 chr6 125302363 125302492 -24214545 + ID_B1 SINE B4 94 224 0 7 1540 396 138 0 0 chr6 125302536 125302601 -24214436 + (TCCC)n Simple_repeat Simple_repeat 2 66 0 7 1540 307 244 23 23 chr6 125302787 125302875 -24214162 + PB1 SINE Alu 25 112 -15 7 1540 542 131 147 18 chr6 125304096 125304205 -24212832 - B1_Mm SINE Alu -2 148 25 7 1540 242 257 124 38 chr6 125304125 125304230 -24212807 - RLTR25B LTR ERVK -526 502 389 7 1541 428 309 84 6 chr6 125305999 125306165 -24210872 - B4A SINE B4 -105 187 9 7 1541 369 0 0 0 chr6 125306697 125306738 -24210299 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 1541 351 0 0 0 chr6 125306738 125306776 -24210261 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1541 1126 48 14 7 chr6 125307050 125307196 -24209841 - B1_Mm SINE Alu 0 147 1 7 1541 429 279 12 81 chr6 125308301 125308461 -24208576 + RSINE1 SINE B4 2 150 -15 7 1541 317 317 16 32 chr6 125308656 125308780 -24208257 + MIR SINE MIR 29 150 -112 7 1541 347 217 0 0 chr6 125308780 125308849 -24208188 + ID4 SINE ID 1 69 -14 7 1541 23 0 0 0 chr6 125309700 125309723 -24207314 + AT_rich Low_complexity Low_complexity 1 23 0 7 1541 215 262 16 47 chr6 125309734 125309798 -24207239 - ID4_ SINE ID -20 63 2 7 1541 635 194 96 7 chr6 125309831 125309966 -24207071 - B1_Mur1 SINE Alu -1 148 2 7 1541 839 175 0 7 chr6 125309990 125310134 -24206903 - B3 SINE B2 0 216 74 7 1541 435 308 30 0 chr6 125310208 125310341 -24206696 - ID_B1 SINE B4 -3 221 85 7 1541 245 286 0 14 chr6 125311332 125311403 -24205634 + (CCCCAG)n Simple_repeat Simple_repeat 1 70 0 7 1541 255 275 43 14 chr6 125313915 125313985 -24203052 + U6 snRNA snRNA 1 72 -35 7 1541 212 323 0 0 chr6 125314517 125314579 -24202458 + C-rich Low_complexity Low_complexity 1 62 0 7 1541 1228 126 21 10 chr6 125315245 125315404 -24201633 + B2_Mm2 SINE B2 1 159 -36 7 1541 369 0 0 0 chr6 125315404 125315445 -24201592 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 7 1541 1219 54 0 0 chr6 125315445 125315592 -24201445 + B1_Mus1 SINE Alu 2 148 0 7 1541 1228 126 21 10 chr6 125315592 125315624 -24201413 + B2_Mm2 SINE B2 160 194 -1 7 1541 515 211 15 98 chr6 125316095 125316245 -24200792 + B1F2 SINE Alu 13 148 -1 7 1541 913 173 52 42 chr6 125316248 125316441 -24200596 + B2_Mm2 SINE B2 1 195 0 7 1541 359 89 0 18 chr6 125316446 125316503 -24200534 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 7 1541 764 21 0 11 chr6 125316521 125316616 -24200421 + (GAGAA)n Simple_repeat Simple_repeat 2 95 0 7 1541 488 184 10 0 chr6 125317477 125317580 -24199457 + CT-rich Low_complexity Low_complexity 3 106 0 7 1541 612 191 20 0 chr6 125317588 125317720 -24199317 - B1F SINE Alu -1 148 10 7 1541 447 92 0 0 chr6 125318127 125318192 -24198845 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1541 523 309 120 43 chr6 125318681 125319006 -24198031 + MLT1C LTR MaLR 46 395 -72 7 1541 280 85 43 0 chr6 125319062 125319109 -24197928 - tRNA-Ala-GCY_ tRNA tRNA -24 51 3 7 1541 202 307 68 34 chr6 125319214 125319332 -24197705 + L2c LINE L2 2846 2967 -452 7 1541 448 296 29 6 chr6 125319377 125319602 -24197435 + (CA)n Simple_repeat Simple_repeat 1 230 0 7 1541 260 191 43 0 chr6 125319627 125319721 -24197316 + (CA)n Simple_repeat Simple_repeat 1 98 0 7 1541 200 286 20 99 chr6 125320014 125320115 -24196922 + L2c LINE L2 3256 3348 -39 7 1541 261 302 45 23 chr6 125321135 125321223 -24195814 - B4 SINE B4 -120 172 83 7 1541 1389 93 0 6 chr6 125321258 125321441 -24195596 + B2_Mm2 SINE B2 1 182 -13 7 1541 340 250 215 63 chr6 125321468 125321626 -24195411 - B3A SINE B2 -16 182 1 7 1541 915 195 74 0 chr6 125321749 125321939 -24195098 - B3 SINE B2 -5 211 8 7 1541 1028 197 59 0 chr6 125323774 125323977 -24193060 - B3 SINE B2 0 216 2 7 1541 334 295 0 0 chr6 125324051 125324129 -24192908 + PB1D10 SINE Alu 12 89 -28 7 1541 222 37 0 0 chr6 125324135 125324162 -24192875 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 7 1541 653 140 0 36 chr6 125324164 125324275 -24192762 + B1_Mur4 SINE Alu 7 113 -37 7 1541 189 0 0 0 chr6 125324276 125324297 -24192740 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 7 1541 287 302 60 0 chr6 125325464 125325580 -24191457 - MIR3 SINE MIR -46 162 40 7 1541 402 21 0 0 chr6 125325648 125325695 -24191342 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1541 335 121 0 17 chr6 125326221 125326280 -24190757 + (GGAAA)n Simple_repeat Simple_repeat 3 60 0 7 1541 356 197 25 38 chr6 125326288 125326367 -24190670 - ID4 SINE ID -1 82 5 7 1541 1015 110 7 7 chr6 125326423 125326569 -24190468 + B1_Mur4 SINE Alu 5 150 0 7 1541 510 274 18 9 chr6 125326649 125326763 -24190274 - PB1D10 SINE Alu -2 115 1 7 1541 935 166 223 0 chr6 125326990 125327165 -24189872 - B3 SINE B2 -1 215 2 7 1541 387 248 69 83 chr6 125329369 125329514 -24187523 - B1F1 SINE Alu 0 149 7 7 1541 311 358 93 34 chr6 125329523 125329760 -24187277 + MER58B DNA MER1_type 81 331 -10 7 1541 211 350 26 0 chr6 125330179 125330296 -24186741 + CT-rich Low_complexity Low_complexity 3 122 0 7 1541 451 0 0 33 chr6 125331582 125331643 -24185394 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 8 1541 216 357 102 23 chr6 125333121 125333336 -24183701 - L2c LINE L2 -38 3349 3118 8 1541 217 234 21 0 chr6 125333569 125333616 -24183421 + B4 SINE B4 35 82 -210 8 1541 295 196 0 18 chr6 125333585 125333642 -24183395 + RSINE1 SINE B4 53 108 -57 8 1541 1248 73 78 0 chr6 125333674 125333834 -24183203 + B2_Mm1a SINE B2 1 174 -19 8 1541 387 0 0 0 chr6 125333834 125333877 -24183160 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 8 1541 1248 73 78 0 chr6 125333877 125333895 -24183142 + B2_Mm1a SINE B2 175 192 -1 8 1541 483 307 48 30 chr6 125333922 125334090 -24182947 + ID_B1 SINE B4 2 172 -52 8 1541 234 0 0 0 chr6 125335689 125335715 -24181322 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1541 203 308 53 32 chr6 125335811 125335905 -24181132 - L3b LINE CR1 -172 310 215 8 1541 239 157 20 0 chr6 125336509 125336560 -24180477 + GA-rich Low_complexity Low_complexity 4 55 0 8 1541 455 297 39 0 chr6 125336584 125336712 -24180325 + ID_B1 SINE B4 90 222 -2 8 1541 518 0 16 0 chr6 125336828 125336890 -24180147 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1541 198 0 0 0 chr6 125336992 125337014 -24180023 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 8 1541 919 169 0 7 chr6 125337027 125337176 -24179861 - B1_Mur2 SINE Alu -1 148 1 8 1541 226 291 74 88 chr6 125337222 125337287 -24179750 + YREP_Mm Unknown Unknown 106 275 -1537 8 1541 957 59 22 0 chr6 125337287 125337423 -24179614 - B1_Mus1 SINE Alu 0 148 10 8 1541 226 291 74 88 chr6 125337423 125337437 -24179600 + YREP_Mm Unknown Unknown 276 317 -1495 8 1541 818 240 45 5 chr6 125337504 125337705 -24179332 + ID_B1 SINE B4 3 211 -13 8 1541 189 74 0 0 chr6 125337706 125337733 -24179304 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1541 416 269 0 0 chr6 125337946 125338050 -24178987 + PB1D10 SINE Alu 1 104 -13 8 1541 453 276 20 7 chr6 125338180 125338326 -24178711 + B1F1 SINE Alu 1 148 -1 8 1541 374 227 32 64 chr6 125338517 125338611 -24178426 + PB1D10 SINE Alu 12 102 -18 8 1541 195 42 0 0 chr6 125338625 125338649 -24178388 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 8 1541 1642 162 46 24 chr6 125338771 125339100 -24177937 - ORR1C2 LTR MaLR -1 383 48 8 1541 446 268 100 44 chr6 125339106 125339331 -24177706 - RLTR12B LTR ERVK -25 503 272 8 1541 504 0 0 0 chr6 125339331 125339387 -24177650 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1541 446 238 335 36 chr6 125339387 125339556 -24177481 - RLTR12B LTR ERVK -257 271 47 8 1541 354 176 0 26 chr6 125339557 125339633 -24177404 - ORR1C2 LTR MaLR -310 74 1 8 1541 289 347 68 29 chr6 125339767 125339934 -24177103 + LTR16A LTR ERVL 78 252 -199 8 1541 240 169 136 0 chr6 125339934 125339993 -24177044 - RMER12B LTR ERVK -1 1403 1337 8 1541 1231 27 0 0 chr6 125340320 125340467 -24176570 + B1_Mm SINE Alu 1 147 0 8 1541 252 214 86 0 chr6 125340755 125340825 -24176212 - MER2 DNA MER2_type -174 171 96 8 1541 315 0 0 0 chr6 125340834 125340869 -24176168 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8 1541 900 194 76 10 chr6 125341062 125341259 -24175778 + MTD LTR MaLR 1 210 -209 8 1541 1126 102 0 12 chr6 125341259 125341428 -24175609 + B2_Mm2 SINE B2 1 167 -28 8 1541 1328 80 17 17 chr6 125341428 125341644 -24175393 + B2_Mm1t SINE B2 1 216 0 8 1541 215 74 0 0 chr6 125341675 125341702 -24175335 + (GAA)n Simple_repeat Simple_repeat 2 28 0 8 1541 1162 43 0 0 chr6 125341703 125341843 -24175194 + B1_Mus2 SINE Alu 2 141 -6 8 1541 351 113 0 0 chr6 125341851 125341904 -24175133 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 8 1541 824 167 67 15 chr6 125341904 125342122 -24174915 + MTD LTR MaLR 181 419 0 8 1541 3089 55 8 0 chr6 125342223 125342620 -24174417 + MTB LTR MaLR 1 400 0 8 1541 441 0 0 0 chr6 125342698 125342747 -24174290 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1541 1186 48 7 0 chr6 125342958 125343105 -24173932 + B1_Mus1 SINE Alu 1 148 0 8 1541 213 94 0 0 chr6 125343105 125343137 -24173900 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1541 252 214 86 0 chr6 125343403 125343473 -24173564 - MER2 DNA MER2_type -174 171 96 8 1541 207 0 0 0 chr6 125343482 125343505 -24173532 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8 1541 900 194 76 10 chr6 125343698 125343895 -24173142 + MTD LTR MaLR 1 210 -209 8 1541 1126 102 0 12 chr6 125343895 125344064 -24172973 + B2_Mm2 SINE B2 1 167 -28 8 1541 1328 80 17 17 chr6 125344064 125344280 -24172757 + B2_Mm1t SINE B2 1 216 0 8 1541 219 103 0 0 chr6 125344310 125344339 -24172698 + (GAA)n Simple_repeat Simple_repeat 3 31 0 8 1541 1162 43 0 0 chr6 125344340 125344480 -24172557 + B1_Mus2 SINE Alu 2 141 -6 8 1541 378 107 0 0 chr6 125344487 125344543 -24172494 + (GAAA)n Simple_repeat Simple_repeat 3 58 0 8 1541 824 167 67 15 chr6 125344543 125344761 -24172276 + MTD LTR MaLR 181 419 0 8 1541 3089 55 8 0 chr6 125344862 125345259 -24171778 + MTB LTR MaLR 1 400 0 8 1541 441 0 0 0 chr6 125345337 125345386 -24171651 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1541 1186 48 7 0 chr6 125345597 125345744 -24171293 + B1_Mus1 SINE Alu 1 148 0 8 1541 213 94 0 0 chr6 125345744 125345776 -24171261 + (A)n Simple_repeat Simple_repeat 1 32 0 8 1541 252 214 86 0 chr6 125346042 125346112 -24170925 - MER2 DNA MER2_type -174 171 96 8 1541 351 0 0 0 chr6 125346121 125346160 -24170877 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 8 1541 900 194 76 10 chr6 125346353 125346550 -24170487 + MTD LTR MaLR 1 210 -209 8 1541 1126 102 0 12 chr6 125346550 125346719 -24170318 + B2_Mm2 SINE B2 1 167 -28 8 1541 1328 80 17 17 chr6 125346719 125346935 -24170102 + B2_Mm1t SINE B2 1 216 0 8 1541 215 74 0 0 chr6 125346966 125346993 -24170044 + (GAA)n Simple_repeat Simple_repeat 2 28 0 8 1541 1162 43 0 0 chr6 125346994 125347134 -24169903 + B1_Mus2 SINE Alu 2 141 -6 8 1541 351 113 0 0 chr6 125347142 125347195 -24169842 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 8 1541 811 165 68 16 chr6 125347195 125347410 -24169627 + MTD LTR MaLR 181 416 -3 8 1541 3089 55 8 0 chr6 125347515 125347912 -24169125 + MTB LTR MaLR 1 400 0 8 1541 441 0 0 0 chr6 125347990 125348039 -24168998 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1541 1186 48 7 0 chr6 125348250 125348397 -24168640 + B1_Mus1 SINE Alu 1 148 0 8 1541 252 214 86 0 chr6 125348684 125348754 -24168283 - MER2 DNA MER2_type -174 171 96 8 1541 351 0 0 0 chr6 125348763 125348802 -24168235 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 8 1541 900 194 76 10 chr6 125348995 125349192 -24167845 + MTD LTR MaLR 1 210 -209 8 1541 1126 102 0 12 chr6 125349192 125349361 -24167676 + B2_Mm2 SINE B2 1 167 -28 8 1541 1328 80 17 17 chr6 125349361 125349577 -24167460 + B2_Mm1t SINE B2 1 216 0 8 1541 215 74 0 0 chr6 125349608 125349635 -24167402 + (GAA)n Simple_repeat Simple_repeat 2 28 0 8 1541 1162 43 0 0 chr6 125349636 125349776 -24167261 + B1_Mus2 SINE Alu 2 141 -6 8 1541 450 94 0 0 chr6 125349783 125349847 -24167190 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 8 1541 824 167 67 15 chr6 125349847 125350065 -24166972 + MTD LTR MaLR 181 419 0 8 1541 3089 55 8 0 chr6 125350166 125350563 -24166474 + MTB LTR MaLR 1 400 0 8 1541 459 0 0 0 chr6 125350641 125350692 -24166345 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 1541 1199 54 0 0 chr6 125350903 125351051 -24165986 + B1_Mus1 SINE Alu 1 148 0 8 1541 252 214 86 0 chr6 125351330 125351400 -24165637 - MER2 DNA MER2_type -174 171 96 8 1541 207 0 0 0 chr6 125351409 125351432 -24165605 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8 1541 900 194 76 10 chr6 125351625 125351822 -24165215 + MTD LTR MaLR 1 210 -209 8 1541 1126 102 0 12 chr6 125351822 125351991 -24165046 + B2_Mm2 SINE B2 1 167 -28 8 1541 1328 80 17 17 chr6 125351991 125352207 -24164830 + B2_Mm1t SINE B2 1 216 0 8 1541 219 103 0 0 chr6 125352236 125352265 -24164772 + (GAA)n Simple_repeat Simple_repeat 3 31 0 8 1541 1162 43 0 0 chr6 125352266 125352406 -24164631 + B1_Mus2 SINE Alu 2 141 -6 8 1541 414 100 0 0 chr6 125352413 125352473 -24164564 + (GAAA)n Simple_repeat Simple_repeat 3 62 0 8 1541 824 167 67 15 chr6 125352473 125352691 -24164346 + MTD LTR MaLR 181 419 0 8 1541 3089 55 8 0 chr6 125352792 125353189 -24163848 + MTB LTR MaLR 1 400 0 8 1541 513 0 0 0 chr6 125353267 125353324 -24163713 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1541 1002 75 15 0 chr6 125353535 125353669 -24163368 + B1_Mus1 SINE Alu 1 136 -12 8 1541 297 152 34 0 chr6 125354071 125354130 -24162907 + B1_Mus2 SINE Alu 87 147 0 8 1541 506 319 15 0 chr6 125354309 125354444 -24162593 + B1F1 SINE Alu 2 138 -11 8 1541 203 0 37 0 chr6 125354446 125354473 -24162564 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 8 1541 287 239 0 64 chr6 125354748 125354842 -24162195 + CT-rich Low_complexity Low_complexity 2 89 0 8 1541 221 120 0 39 chr6 125354863 125354915 -24162122 + (TCTCTG)n Simple_repeat Simple_repeat 1 50 0 8 1541 23 0 0 0 chr6 125355091 125355114 -24161923 + AT_rich Low_complexity Low_complexity 1 23 0 8 1541 1209 41 0 0 chr6 125355124 125355271 -24161766 + B1_Mm SINE Alu 1 147 0 8 1541 240 35 0 0 chr6 125355316 125355345 -24161692 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1541 1371 201 104 43 chr6 125355464 125355859 -24161178 + MTD LTR MaLR 1 419 0 8 1541 423 98 0 0 chr6 125356498 125356559 -24160478 + (CA)n Simple_repeat Simple_repeat 1 61 0 8 1541 309 279 37 28 chr6 125356780 125356887 -24160150 + ID_B1 SINE B4 80 187 -37 8 1541 424 251 31 2 chr6 125356791 125356917 -24160120 + B1_Mur1 SINE Alu 13 149 0 8 1541 2484 230 35 40 chr6 125357022 125357253 -24159784 + Lx9 LINE L1 5108 5340 -507 8 1541 1163 219 70 73 chr6 125357253 125357638 -24159399 + ORR1C2 LTR MaLR 1 384 0 8 1541 2484 251 44 39 chr6 125357638 125358241 -24158796 + Lx9 LINE L1 5341 5965 -1508 8 1541 261 0 0 0 chr6 125358241 125358270 -24158767 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1541 1372 352 86 35 chr6 125358270 125358493 -24158544 + Lx9 LINE L1 5966 6209 -1264 8 1541 195 42 0 0 chr6 125358493 125358517 -24158520 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1541 342 0 0 0 chr6 125358517 125358554 -24158483 + (GA)n Simple_repeat Simple_repeat 1 38 0 9 1541 2701 266 120 39 chr6 125358554 125359602 -24157435 + Lx9 LINE L1 6210 7501 -143 8 1541 273 57 0 0 chr6 125359602 125359637 -24157400 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 9 1541 2701 265 120 39 chr6 125359637 125359784 -24157253 + Lx9 LINE L1 7502 7644 0 8 1541 260 267 40 0 chr6 125359914 125359989 -24157048 - BC1_Mm scRNA scRNA -67 85 8 9 1541 956 227 43 0 chr6 125360027 125360234 -24156803 - B3 SINE B2 0 216 1 9 1541 296 280 104 0 chr6 125361436 125361561 -24155476 - B1F SINE Alu -9 140 3 9 1541 776 216 0 0 chr6 125361687 125361835 -24155202 - B1_Mur1 SINE Alu 0 149 2 9 1541 364 224 43 78 chr6 125361874 125361990 -24155047 + ID_B1 SINE B4 90 201 -23 9 1541 720 174 15 0 chr6 125361998 125362130 -24154907 + B1_Mur1 SINE Alu 16 149 0 9 1541 198 0 0 0 chr6 125362130 125362152 -24154885 + (CAA)n Simple_repeat Simple_repeat 3 24 0 9 1541 413 233 181 0 chr6 125362390 125362506 -24154531 + B1F2 SINE Alu 1 137 -12 9 1541 180 0 0 0 chr6 125362506 125362526 -24154511 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 9 1541 1361 49 49 0 chr6 125362721 125362904 -24154133 + B2_Mm1t SINE B2 1 192 -1 9 1541 273 256 21 75 chr6 125362925 125363018 -24154019 + U4 snRNA snRNA 1 88 -57 9 1541 478 246 39 8 chr6 125363116 125363243 -24153794 + ID_B1 SINE B4 80 210 -14 9 1541 566 306 46 23 chr6 125363251 125363512 -24153525 + L1MB7 LINE L1 5907 6173 -11 9 1541 280 413 6 12 chr6 125363616 125363785 -24153252 - Charlie25 DNA MER1_type -995 1529 1362 9 1541 23 53 0 34 chr6 125363800 125363825 -24153212 + AT_rich Low_complexity Low_complexity 1 25 0 9 1541 737 165 152 11 chr6 125363825 125364009 -24153028 + B3 SINE B2 1 210 -6 9 1541 23 53 0 34 chr6 125364009 125364042 -24152995 + AT_rich Low_complexity Low_complexity 1 32 0 9 1541 1283 165 72 33 chr6 125364054 125364328 -24152709 + ORR1A4 LTR MaLR 1 285 -44 9 1541 999 51 58 7 chr6 125364328 125364476 -24152561 + B2_Mm2 SINE B2 2 172 -21 9 1541 225 0 0 0 chr6 125364476 125364501 -24152536 + (TA)n Simple_repeat Simple_repeat 1 25 0 9 1541 875 131 137 0 chr6 125364501 125364520 -24152517 + B2_Mm1t SINE B2 173 191 -2 9 1541 245 174 22 0 chr6 125364516 125364562 -24152475 + ORR1A4 LTR MaLR 340 386 -8 9 1541 1046 215 5 0 chr6 125364566 125364766 -24152271 - B3 SINE B2 -14 202 2 9 1541 340 138 12 107 chr6 125365276 125365375 -24151662 - B1_Mur2 SINE Alu -10 139 49 9 1541 817 151 7 27 chr6 125365426 125365576 -24151461 - B1_Mus1 SINE Alu -1 147 1 9 1541 1374 54 32 5 chr6 125365590 125365776 -24151261 - B2_Mm2 SINE B2 -4 191 1 9 1541 500 216 19 29 chr6 125365782 125365887 -24151150 - B1_Mur2 SINE Alu -7 142 39 9 1541 546 0 136 0 chr6 125365890 125367878 -24149159 + (CCTG)n Simple_repeat Simple_repeat 1 2258 0 9 1541 531 0 0 0 chr6 125368045 125368104 -24148933 + (GAA)n Simple_repeat Simple_repeat 1 59 0 9 1541 342 271 9 45 chr6 125368131 125368243 -24148794 - B3A SINE B2 -24 174 67 9 1541 1101 50 0 0 chr6 125368319 125368458 -24148579 + B1_Mus1 SINE Alu 1 139 -9 9 1541 353 22 22 0 chr6 125368458 125368504 -24148533 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 9 1541 1055 30 53 0 chr6 125368517 125368649 -24148388 + B1_Mus2 SINE Alu 1 139 -8 9 1541 300 229 14 8 chr6 125369095 125369199 -24147838 - PB1D10 SINE Alu -41 109 2 9 1541 520 134 10 10 chr6 125369205 125369303 -24147734 + CT-rich Low_complexity Low_complexity 4 101 0 9 1541 1387 97 0 5 chr6 125369309 125369505 -24147532 - B2_Mm2 SINE B2 0 195 1 9 1541 261 0 0 0 chr6 125369652 125369681 -24147356 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 9 1541 1107 62 0 0 chr6 125369685 125369829 -24147208 - B1_Mus1 SINE Alu -4 144 1 9 1541 354 200 117 78 chr6 125370116 125370219 -24146818 + ID_B1 SINE B4 78 184 -40 9 1541 339 119 0 0 chr6 125370223 125370290 -24146747 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1541 241 347 25 25 chr6 125370326 125370447 -24146590 - L2 LINE L2 -491 2928 2808 9 1541 694 161 108 0 chr6 125370503 125370633 -24146404 + B1_Mur1 SINE Alu 5 148 -1 9 1541 460 305 0 23 chr6 125370662 125370793 -24146244 - B4 SINE B4 -5 287 160 9 1541 1628 276 140 37 chr6 125370958 125371631 -24145406 - Lx8 LINE L1 -438 7035 6294 9 1541 414 183 103 28 chr6 125371747 125371854 -24145183 + PB1D10 SINE Alu 3 117 0 9 1541 231 261 108 11 chr6 125371905 125371998 -24145039 - L1MB2 LINE L1 -116 6067 5966 9 1541 795 264 5 10 chr6 125372176 125372379 -24144658 - L1MB2 LINE L1 -225 5946 5745 9 1541 771 116 8 0 chr6 125372384 125372505 -24144532 + URR1B DNA MER1_type 104 225 0 9 1541 219 289 0 40 chr6 125372585 125372686 -24144351 + G-rich Low_complexity Low_complexity 3 99 0 9 1541 343 333 61 7 chr6 125372761 125372909 -24144128 + MTEa LTR MaLR 221 376 -3 9 1541 299 244 23 0 chr6 125372928 125373014 -24144023 + L1M2 LINE L1 4592 4679 -1464 9 1541 493 208 192 0 chr6 125373474 125373604 -24143433 + Lx8 LINE L1 6758 6912 -561 9 1541 375 303 0 60 chr6 125374039 125374155 -24142882 - ID_B1 SINE B4 -38 186 78 9 1541 297 0 0 0 chr6 125374168 125374201 -24142836 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1541 1203 21 7 0 chr6 125374668 125374813 -24142224 + B1_Mus2 SINE Alu 2 147 0 9 1541 1554 151 103 25 chr6 125374814 125375181 -24141856 - RMER17C LTR ERVK -14 396 1 9 1541 633 96 155 31 chr6 125375871 125376000 -24141037 + B1_Mur3 SINE Alu 3 147 -2 9 1541 251 0 0 56 chr6 125376998 125377034 -24140003 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 9 1541 317 326 54 34 chr6 125377374 125377523 -24139514 - MIR SINE MIR -14 248 97 9 1541 382 325 23 39 chr6 125377529 125377585 -24139452 + ID_B1 SINE B4 86 140 -84 9 1541 2052 128 66 11 chr6 125377585 125377807 -24139230 + RLTR14 LTR ERV1 1 242 -140 9 1541 423 0 0 0 chr6 125377807 125377854 -24139183 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1541 2052 128 66 11 chr6 125377854 125377993 -24139044 + RLTR14 LTR ERV1 243 382 0 9 1541 382 325 23 39 chr6 125377993 125378064 -24138973 + ID_B1 SINE B4 141 211 -13 9 1541 711 47 33 66 chr6 125378085 125378266 -24138771 + (GGA)n Simple_repeat Simple_repeat 1 175 0 9 1541 622 47 38 76 chr6 125378278 125378463 -24138574 + GA-rich Low_complexity Low_complexity 1 178 0 9 1541 713 40 32 75 chr6 125378475 125378662 -24138375 + (GGA)n Simple_repeat Simple_repeat 1 179 0 9 1541 303 91 21 74 chr6 125378665 125378760 -24138277 + GA-rich Low_complexity Low_complexity 1 90 0 9 1541 684 135 0 0 chr6 125379294 125379405 -24137632 + (CAT)n Simple_repeat Simple_repeat 1 111 0 9 1541 789 212 84 20 chr6 125379449 125379651 -24137386 - B3 SINE B2 0 216 2 9 1541 21 57 0 0 chr6 125380074 125380109 -24136928 + AT_rich Low_complexity Low_complexity 1 35 0 9 1541 1132 75 0 0 chr6 125380116 125380262 -24136775 + B1_Mus2 SINE Alu 1 146 -1 9 1541 609 320 95 34 chr6 125380301 125380688 -24136349 - Lx8 LINE L1 -34 7439 7016 9 1541 487 302 100 8 chr6 125380908 125381145 -24135892 - RMER20B LTR ERVK -154 362 109 9 1541 464 233 71 54 chr6 125381277 125381445 -24135592 - Lx8 LINE L1 -433 7040 6870 9 1541 1874 306 36 16 chr6 125381416 125382103 -24134934 + Lx8 LINE L1 6151 6851 -622 9 1541 1288 78 20 25 chr6 125382110 125382268 -24134769 + B2_Mm2 SINE B2 1 158 -37 9 1541 288 0 0 0 chr6 125382268 125382300 -24134737 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 9 1541 1288 78 20 25 chr6 125382300 125382337 -24134700 + B2_Mm2 SINE B2 159 195 0 9 1541 1231 27 0 0 chr6 125382340 125382487 -24134550 + B1_Mm SINE Alu 1 147 0 9 1541 279 0 0 0 chr6 125382562 125382593 -24134444 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1541 385 301 269 0 chr6 125383200 125383386 -24133651 + MTEa LTR MaLR 11 246 -133 9 1541 375 309 0 31 chr6 125383506 125383603 -24133434 + MTEa LTR MaLR 248 341 -38 9 1541 474 238 0 4 chr6 125383605 125383706 -24133331 - B1_Mur3 SINE Alu -21 99 3 9 1541 289 269 29 9 chr6 125384054 125384159 -24132878 + PB1D10 SINE Alu 5 111 -6 9 1541 251 114 23 0 chr6 125384243 125384287 -24132750 + (GGA)n Simple_repeat Simple_repeat 2 46 0 9 1541 603 154 138 0 chr6 125384317 125384447 -24132590 - B1_Mus1 SINE Alu 0 148 1 9 1541 352 224 35 23 chr6 125384369 125384456 -24132581 - MT2B LTR ERVL -361 240 153 9 1541 243 253 81 35 chr6 125384550 125384636 -24132401 - ID_B1 SINE B4 -129 95 6 9 1541 504 0 0 0 chr6 125384829 125384885 -24132152 + (GGA)n Simple_repeat Simple_repeat 1 56 0 9 1541 468 205 0 3 chr6 125384943 125385040 -24131997 + B1_Mur2 SINE Alu 25 118 -2 9 1541 240 312 45 27 chr6 125385040 125385055 -24131982 + B4 SINE B4 110 223 -69 9 1541 241 322 77 39 chr6 125385758 125385939 -24131098 - L2a LINE L2 -286 3140 2953 9 1541 654 184 49 56 chr6 125386265 125386409 -24130628 + B1_Mur2 SINE Alu 2 144 -5 9 1541 282 143 0 0 chr6 125386410 125386459 -24130578 + (GGA)n Simple_repeat Simple_repeat 2 50 0 9 1541 792 103 0 0 chr6 125386542 125386658 -24130379 + (TTTC)n Simple_repeat Simple_repeat 1 116 0 9 1541 189 0 0 0 chr6 125386660 125386681 -24130356 + (TCCC)n Simple_repeat Simple_repeat 4 24 0 9 1541 1088 52 0 0 chr6 125386681 125386816 -24130221 - B1_Mus1 SINE Alu -12 136 2 9 1541 292 315 51 51 chr6 125386841 125386978 -24130059 - RMER5 LTR ERV1 -73 461 325 9 1541 691 188 126 129 chr6 125386992 125387309 -24129728 + ORR1D2 LTR MaLR 2 317 -53 9 1541 552 156 8 68 chr6 125387298 125387415 -24129622 + B2_Mm2 SINE B2 86 195 0 9 1541 1998 238 56 19 chr6 125387910 125388425 -24128612 + RMER5 LTR ERV1 1 534 0 9 1541 577 269 221 35 chr6 125388647 125388963 -24128074 + MER21B LTR ERV1 1 375 -488 9 1541 232 292 77 22 chr6 125389149 125389240 -24127797 - MLT1N2 LTR MaLR -47 515 420 9 1541 893 109 101 11 chr6 125389346 125389523 -24127514 - ORR1B1 LTR MaLR -2 392 142 9 1541 913 163 0 43 chr6 125389524 125389774 -24127263 + (TCTCTG)n Simple_repeat Simple_repeat 1 239 0 1 1541 407 321 41 94 chr6 125389913 125390070 -24126967 + L2a LINE L2 3123 3272 -154 1 1541 258 256 51 0 chr6 125390070 125390148 -24126889 - ID2 SINE ID 0 83 2 1 1541 407 321 41 94 chr6 125390148 125390310 -24126727 + L2a LINE L2 3273 3425 -1 1 1541 411 308 117 14 chr6 125390383 125390528 -24126509 + B4 SINE B4 115 274 -18 1 1541 258 325 0 11 chr6 125390548 125390635 -24126402 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1541 461 270 70 51 chr6 125390893 125391049 -24125988 - RLTR14 LTR ERV1 0 382 224 1 1541 200 23 89 22 chr6 125391402 125391447 -24125590 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 1 1541 203 330 88 0 chr6 125391459 125391550 -24125487 - MIRm SINE MIR -158 118 20 1 1541 328 254 0 0 chr6 125392217 125392284 -24124753 + ID4 SINE ID 10 76 -7 1 1541 300 224 105 0 chr6 125392391 125392467 -24124570 - BC1_Mm scRNA scRNA -64 88 5 1 1541 473 205 62 9 chr6 125393474 125393587 -24123450 + B1F SINE Alu 29 147 -2 1 1541 218 254 17 0 chr6 125394094 125394153 -24122884 + ID4 SINE ID 2 61 -22 1 1541 470 300 0 58 chr6 125394371 125394562 -24122475 - B3A SINE B2 -5 193 14 1 1541 282 313 48 0 chr6 125394633 125394716 -24122321 - MLT2D LTR ERVL -80 480 394 1 1541 309 157 73 0 chr6 125394855 125394923 -24122114 + PB1D9 SINE Alu 30 113 -7 1 1541 757 200 7 7 chr6 125394927 125395063 -24121974 + B1_Mur1 SINE Alu 12 147 -2 1 1541 379 179 15 0 chr6 125395105 125395172 -24121865 + ID4 SINE ID 5 72 -11 1 1541 1373 70 16 0 chr6 125395177 125395362 -24121675 - B2_Mm2 SINE B2 -6 189 2 1 1541 296 346 36 55 chr6 125395403 125395568 -24121469 - LTR85a LTR Gypsy? -7 695 534 1 1541 302 0 26 0 chr6 125395678 125395716 -24121321 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1541 1846 120 6 82 chr6 125396013 125396064 -24120973 - ORR1A2 LTR MaLR 0 327 288 1 1541 1103 69 7 0 chr6 125396064 125396208 -24120829 - B1_Mus2 SINE Alu -1 146 2 1 1541 1846 120 6 82 chr6 125396208 125396509 -24120528 - ORR1A2 LTR MaLR -40 287 3 1 1541 1170 62 0 0 chr6 125396592 125396738 -24120299 + B1_Mus2 SINE Alu 2 147 0 1 1541 261 0 0 0 chr6 125396738 125396767 -24120270 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1541 207 0 0 0 chr6 125397763 125397786 -24119251 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1 1541 1191 219 45 14 chr6 125397801 125398093 -24118944 - Lx3C LINE L1 -26 6950 6650 1 1541 243 0 0 0 chr6 125398096 125398123 -24118914 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1541 774 161 7 0 chr6 125398123 125398260 -24118777 - B1_Mur4 SINE Alu -12 138 1 1 1541 4131 122 45 14 chr6 125398325 125399056 -24117981 - RMER6A LTR ERVK 0 756 3 1 1541 218 303 44 96 chr6 125399075 125399210 -24117827 - RSINE1 SINE B4 -9 156 29 1 1541 567 170 0 28 chr6 125399217 125399326 -24117711 - PB1D10 SINE Alu 0 117 12 1 1541 338 267 10 10 chr6 125399242 125399344 -24117693 - ID_B1 SINE B4 -48 176 75 1 1541 659 100 9 0 chr6 125399468 125399578 -24117459 + (TCTCC)n Simple_repeat Simple_repeat 4 114 0 1 1541 186 301 31 31 chr6 125400265 125400361 -24116676 - L2 LINE L2 -2601 818 723 1 1541 240 264 253 0 chr6 125400361 125400452 -24116585 + PB1D10 SINE Alu 1 114 -3 1 1541 750 285 65 8 chr6 125400463 125400725 -24116312 + B4A SINE B4 2 278 -14 1 1541 343 353 88 15 chr6 125400917 125401121 -24115916 + MLT1L LTR MaLR 69 287 -323 1 1541 390 317 0 9 chr6 125401129 125401234 -24115803 + PB1D10 SINE Alu 10 113 -4 1 1541 2170 90 9 64 chr6 125401255 125401315 -24115722 - ORR1A2 LTR MaLR -1 326 270 1 1541 1099 55 14 0 chr6 125401315 125401461 -24115576 - B1_Mus1 SINE Alu 0 148 1 1 1541 2170 90 9 64 chr6 125401461 125401745 -24115292 - ORR1A2 LTR MaLR -58 269 1 1 1541 528 16 0 0 chr6 125401775 125401836 -24115201 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1541 1020 95 0 26 chr6 125401897 125402048 -24114989 - B1_Mus1 SINE Alu 0 148 2 1 1541 1005 75 0 0 chr6 125402155 125402288 -24114749 + B1_Mm SINE Alu 2 134 -13 1 1541 318 19 18 53 chr6 125402296 125402353 -24114684 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 1 1541 674 241 12 57 chr6 125402408 125402444 -24114593 + ID_B1 SINE B4 58 151 -141 1 1541 1063 43 0 7 chr6 125402444 125402583 -24114454 + B1_Mus1 SINE Alu 11 148 0 1 1541 674 241 12 57 chr6 125402583 125402623 -24114414 + ID_B1 SINE B4 152 263 -29 1 1541 490 252 102 0 chr6 125402631 125402660 -24114377 + B4 SINE B4 48 89 -203 1 1541 257 359 0 8 chr6 125402660 125402778 -24114259 + PB1D9 SINE Alu 1 117 -3 1 1541 360 0 0 0 chr6 125403395 125403435 -24113602 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1541 1049 281 18 7 chr6 125403443 125403726 -24113311 - B4A SINE B4 -2 290 5 1 1541 521 280 26 37 chr6 125404533 125404695 -24112342 + B3A SINE B2 2 163 -35 1 1541 294 29 0 0 chr6 125404695 125404730 -24112307 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 1 1541 521 280 26 37 chr6 125404730 125404756 -24112281 + B3A SINE B2 164 187 -11 1 1541 253 223 0 113 chr6 125405167 125405273 -24111764 - L1MA4 LINE L1 0 6300 6207 1 1541 1061 338 67 7 chr6 125405256 125405862 -24111175 - L1MA4 LINE L1 -262 6038 5365 1 1541 1499 47 16 0 chr6 125406593 125406784 -24110253 + B2_Mm2 SINE B2 1 194 -1 1 1541 315 168 128 10 chr6 125406825 125406927 -24110110 - B3A SINE B2 -84 114 1 1 1541 210 143 0 0 chr6 125407138 125407173 -24109864 + (TTTC)n Simple_repeat Simple_repeat 1 35 0 1 1541 713 60 259 0 chr6 125407230 125407346 -24109691 - B1_Mus1 SINE Alu 0 148 3 1 1541 189 107 0 0 chr6 125408337 125408365 -24108672 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1541 536 301 20 27 chr6 125408659 125408806 -24108231 + RSINE1 SINE B4 3 148 -17 1 1541 364 254 82 0 chr6 125408906 125409016 -24108021 - L1MB4 LINE L1 -213 5967 5849 1 1541 220 250 46 15 chr6 125409017 125409082 -24107955 - PB1D9 SINE Alu -43 77 11 1 1541 260 245 153 41 chr6 125409163 125409261 -24107776 - PB1D7 SINE Alu -5 115 7 1 1541 22 0 0 0 chr6 125409261 125409283 -24107754 + AT_rich Low_complexity Low_complexity 1 22 0 1 1541 748 191 111 11 chr6 125409283 125409463 -24107574 - B3 SINE B2 -16 200 3 1 1541 297 361 9 9 chr6 125409631 125409740 -24107297 + MLT2F LTR ERVL 455 563 0 1 1541 242 276 112 0 chr6 125410073 125410207 -24106830 + B1_Mur3 SINE Alu 1 149 0 1 1541 301 253 0 0 chr6 125411027 125411106 -24105931 - ID4 SINE ID 0 83 5 1 1541 576 197 151 43 chr6 125411504 125411690 -24105347 - B3 SINE B2 0 216 11 1 1541 242 255 32 0 chr6 125411715 125411786 -24105251 - ID4 SINE ID -60 92 20 1 1541 234 271 0 2 chr6 125412543 125412610 -24104427 - B1F1 SINE Alu -51 66 1 1 1541 221 278 0 89 chr6 125412554 125412633 -24104404 - ID_B1 SINE B4 -87 137 66 1 1541 1458 53 37 0 chr6 125412764 125412952 -24104085 - B2_Mm2 SINE B2 0 195 1 1 1541 609 182 39 77 chr6 125415041 125415196 -24101841 + B3A SINE B2 1 149 -49 1 1541 501 17 0 0 chr6 125415208 125415266 -24101771 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1541 681 237 20 50 chr6 125415664 125415864 -24101173 - B3A SINE B2 -4 194 1 1 1541 452 252 50 8 chr6 125416028 125416148 -24100889 - B1_Mur1 SINE Alu -11 138 14 1 1541 1058 88 0 7 chr6 125416150 125416299 -24100738 + B1_Mus1 SINE Alu 1 148 0 1 1541 524 215 0 36 chr6 125416378 125416489 -24100548 - PB1D9 SINE Alu -13 107 1 1 1541 632 172 82 0 chr6 125416491 125416613 -24100424 + B1_Mur2 SINE Alu 18 149 0 1 1541 516 279 85 68 chr6 125416661 125416942 -24100095 + B4A SINE B4 1 286 -6 1 1541 453 50 0 0 chr6 125417066 125417126 -24099911 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1541 236 216 39 146 chr6 125419573 125419676 -24097361 + MT2B2 LTR ERVL 147 238 -346 1 1541 408 219 123 25 chr6 125419600 125419722 -24097315 + B1F SINE Alu 7 140 -9 1 1541 234 250 14 14 chr6 125419739 125419808 -24097229 + ID4_ SINE ID 2 70 -13 1 1541 333 0 0 0 chr6 125419825 125419862 -24097175 + (CAT)n Simple_repeat Simple_repeat 2 38 0 1 1541 1175 40 0 20 chr6 125420446 125420597 -24096440 - B1_Mus1 SINE Alu 0 148 1 1 1541 1062 60 0 0 chr6 125421076 125421209 -24095828 - B1_Mus2 SINE Alu -13 134 2 1 1541 256 56 0 0 chr6 125421850 125421886 -24095151 - B2_Mm2 SINE B2 -158 37 2 1 1541 265 294 0 0 chr6 125423067 125423135 -24093902 - PB1 SINE Alu -30 97 30 1 1541 1183 48 0 0 chr6 125423181 125423328 -24093709 - B1_Mm SINE Alu 0 147 1 1 1541 271 258 90 30 chr6 125424529 125424629 -24092408 + RCHARR1 DNA MER1_type 855 960 -14 1 1541 26 0 0 0 chr6 125424673 125424699 -24092338 + AT_rich Low_complexity Low_complexity 1 26 0 1 1541 401 207 10 20 chr6 125425024 125425147 -24091890 - B1F1 SINE Alu 0 149 1 1 1541 298 205 156 18 chr6 125425168 125425282 -24091755 - B1F2 SINE Alu -21 128 1 1 1541 225 0 0 0 chr6 125425820 125425845 -24091192 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 1 1541 281 305 28 92 chr6 125425959 125426100 -24090937 + MTE2b LTR MaLR 243 374 -5 1 1541 295 203 57 14 chr6 125426611 125426681 -24090356 - RSINE1 SINE B4 0 165 93 1 1541 353 205 0 13 chr6 125426774 125426853 -24090184 - B4 SINE B4 -209 83 6 1 1541 248 288 0 24 chr6 125426879 125426961 -24090076 - PB1D10 SINE Alu -8 109 30 1 1541 397 236 66 46 chr6 125426961 125427112 -24089925 + L1MC4a LINE L1 7523 7676 -206 1 1541 328 263 116 0 chr6 125427143 125427238 -24089799 + PB1D10 SINE Alu 6 111 -6 1 1541 649 198 17 4 chr6 125427836 125427974 -24089063 + B1_Mur1 SINE Alu 1 137 -12 1 1541 243 0 0 0 chr6 125428000 125428027 -24089010 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1 1541 592 194 71 16 chr6 125428046 125428172 -24088865 + B1F SINE Alu 17 149 0 1 1541 252 200 0 0 chr6 125428172 125428224 -24088813 + BC1_Mm scRNA scRNA 13 64 -19 1 1541 330 283 75 11 chr6 125428263 125428356 -24088681 - PB1D10 SINE Alu -18 99 1 1 1541 21 0 0 0 chr6 125428752 125428773 -24088264 + AT_rich Low_complexity Low_complexity 1 21 0 1 1541 203 222 0 53 chr6 125429134 125429191 -24087846 + G-rich Low_complexity Low_complexity 5 58 0 1 1541 404 286 46 38 chr6 125429197 125429328 -24087709 - ID_B1 SINE B4 -13 211 80 1 1541 434 244 16 50 chr6 125429770 125429891 -24087146 - B1F SINE Alu -21 128 12 1 1541 189 0 0 0 chr6 125431350 125431371 -24085666 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 1 1541 213 170 106 0 chr6 125433060 125433107 -24083930 - MIRc SINE MIR -119 149 98 1 1541 225 241 37 0 chr6 125433219 125433273 -24083764 - ID_B1 SINE B4 -37 187 132 1 1541 245 104 62 0 chr6 125433563 125433611 -24083426 - MIR SINE MIR -73 135 85 1 1541 980 193 66 0 chr6 125433738 125433935 -24083102 + URR1A DNA MER1_type 15 224 -2 1 1541 1180 48 0 0 chr6 125434565 125434711 -24082326 + B1_Mus2 SINE Alu 1 146 -1 1 1541 300 119 0 0 chr6 125434712 125434771 -24082266 + (A)n Simple_repeat Simple_repeat 1 59 0 1 1541 487 281 150 12 chr6 125434983 125435156 -24081881 - ID_B1 SINE B4 -20 204 8 1 1541 185 304 37 25 chr6 125435157 125435238 -24081799 - MIRm SINE MIR -114 162 81 1 1542 474 267 51 8 chr6 125435952 125436069 -24080968 + B1F SINE Alu 19 140 -9 1 1542 345 125 0 0 chr6 125436418 125436474 -24080563 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1542 204 25 73 24 chr6 125436474 125436515 -24080522 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 1542 1091 45 0 0 chr6 125437399 125437533 -24079504 - B1_Mm SINE Alu -12 135 2 1 1542 800 226 129 0 chr6 125437553 125437739 -24079298 - B3 SINE B2 -6 210 1 1 1542 378 0 0 0 chr6 125438086 125438128 -24078909 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1542 536 210 144 8 chr6 125438181 125438306 -24078731 - B1_Mur3 SINE Alu -7 142 1 1 1542 1079 89 0 0 chr6 125438336 125438482 -24078555 - B1_Mus2 SINE Alu 0 147 2 1 1542 424 158 38 136 chr6 125438779 125438911 -24078126 + PB1D9 SINE Alu 1 119 -1 1 1542 340 231 26 0 chr6 125439429 125439507 -24077530 + ID4_ SINE ID 2 81 -2 1 1542 1392 43 27 11 chr6 125440956 125441144 -24075893 + B2_Mm1a SINE B2 1 191 -2 1 1542 189 0 0 0 chr6 125441841 125441862 -24075175 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1 1542 23 0 0 0 chr6 125445463 125445486 -24071551 + AT_rich Low_complexity Low_complexity 1 23 0 1 1542 653 182 159 0 chr6 125445489 125445615 -24071422 - B1_Mur1 SINE Alu -2 147 2 1 1542 315 245 61 41 chr6 125445617 125445715 -24071322 - B1F1 SINE Alu 0 149 50 1 1542 1266 35 0 0 chr6 125447134 125447279 -24069758 - B1_Mus2 SINE Alu -1 146 2 1 1542 1322 126 16 0 chr6 125447487 125447678 -24069359 - B2_Mm2 SINE B2 -1 194 1 1 1542 1276 27 14 0 chr6 125447711 125447857 -24069180 - B1_Mus1 SINE Alu 0 148 1 1 1542 914 131 280 0 chr6 125448580 125448755 -24068282 - URR1A DNA MER1_type 0 226 3 1 1542 1040 169 104 10 chr6 125448910 125449102 -24067935 + B3 SINE B2 1 210 -6 1 1542 217 309 74 0 chr6 125449477 125449558 -24067479 - PB1D10 SINE Alu 0 117 31 1 1542 216 0 0 0 chr6 125449560 125449584 -24067453 + (TTCC)n Simple_repeat Simple_repeat 1 24 0 1 1542 1254 58 0 0 chr6 125449584 125449740 -24067297 + MTB LTR MaLR 245 400 0 1 1542 252 154 17 119 chr6 125449740 125449799 -24067238 - B3 SINE B2 -162 54 2 1 1542 816 276 181 3 chr6 125449803 125450090 -24066947 + MLT1D LTR MaLR 168 505 0 1 1542 711 209 8 0 chr6 125450277 125450406 -24066631 + B1_Mur2 SINE Alu 9 138 -11 1 1542 429 338 44 25 chr6 125450460 125450618 -24066419 + B4A SINE B4 126 286 -6 1 1542 561 15 0 0 chr6 125450673 125450739 -24066298 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1542 501 17 0 0 chr6 125450928 125450986 -24066051 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1542 204 40 0 0 chr6 125451030 125451055 -24065982 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1542 894 196 0 0 chr6 125451642 125451790 -24065247 - B1F2 SINE Alu 0 149 2 1 1542 430 345 7 7 chr6 125451800 125451943 -24065094 - B1F SINE Alu -6 143 1 1 1542 380 250 39 43 chr6 125452345 125452462 -24064575 - PB1 SINE Alu -96 215 25 1 1542 227 283 86 100 chr6 125452370 125452590 -24064447 - RMER6C LTR ERVK -168 522 306 1 1542 297 0 0 0 chr6 125452810 125452843 -24064194 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1542 228 160 0 0 chr6 125452843 125452888 -24064149 + GA-rich Low_complexity Low_complexity 1 45 0 1 1542 283 320 115 29 chr6 125452906 125453094 -24063943 + MIRc SINE MIR 17 232 -36 1 1542 704 283 27 21 chr6 125453134 125453322 -24063715 - B3A SINE B2 -9 189 1 1 1542 242 219 15 15 chr6 125453901 125453966 -24063071 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1542 1009 88 15 0 chr6 125454305 125454441 -24062596 + B1_Mus2 SINE Alu 10 147 0 1 1542 338 315 81 11 chr6 125454550 125454736 -24062301 - L1MC4a LINE L1 -133 7749 7551 1 1542 828 100 0 0 chr6 125454937 125455057 -24061980 + (TTC)n Simple_repeat Simple_repeat 2 121 0 1 1542 663 215 65 33 chr6 125455099 125455284 -24061753 - B3 SINE B2 0 195 6 1 1542 1453 191 174 30 chr6 125455303 125455581 -24061456 - MTD LTR MaLR -5 414 83 1 1542 306 102 0 33 chr6 125455581 125455642 -24061395 - Lx9 LINE L1 0 7644 7586 1 1542 1453 191 174 30 chr6 125455642 125455725 -24061312 - MTD LTR MaLR -337 82 2 1 1542 284 298 24 0 chr6 125455795 125455879 -24061158 - RMER15 LTR ERVL -69 506 421 1 1542 459 0 0 0 chr6 125456299 125456350 -24060687 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 1 1542 308 263 174 48 chr6 125456351 125456371 -24060666 - ID_B1 SINE B4 -46 246 158 1 1542 651 115 221 0 chr6 125456371 125456484 -24060553 - B1_Mur4 SINE Alu -7 143 6 1 1542 308 263 174 48 chr6 125456484 125456500 -24060537 - ID_B1 SINE B4 -46 157 74 1 1542 388 244 0 35 chr6 125457448 125457533 -24059504 - PB1D10 SINE Alu -18 99 18 1 1542 258 259 130 0 chr6 125457597 125457676 -24059361 - B1_Mur2 SINE Alu -6 143 54 1 1542 1244 48 7 0 chr6 125458199 125458346 -24058691 + B1_Mus1 SINE Alu 1 148 0 1 1542 216 0 0 0 chr6 125458351 125458375 -24058662 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1542 1160 75 0 0 chr6 125458459 125458606 -24058431 - B1_Mm SINE Alu 0 147 1 1 1542 225 0 0 0 chr6 125458621 125458646 -24058391 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1 1542 495 90 0 0 chr6 125458864 125458942 -24058095 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 1542 691 289 27 27 chr6 125459028 125459252 -24057785 + RMER15 LTR ERVL 352 575 0 1 1542 207 0 0 0 chr6 125459424 125459447 -24057590 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1542 512 339 113 45 chr6 125459479 125459902 -24057135 + MLT1D LTR MaLR 54 505 0 1 1542 397 378 25 25 chr6 125459968 125460169 -24056868 + MIRb SINE MIR 30 230 -38 1 1542 216 0 0 0 chr6 125460960 125460984 -24056053 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1542 654 68 0 0 chr6 125461593 125461681 -24055356 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1542 387 280 79 79 chr6 125462228 125462418 -24054619 - B4 SINE B4 -76 216 27 1 1542 429 248 140 25 chr6 125463316 125463473 -24053564 + MLT1C LTR MaLR 1 175 -292 1 1542 416 268 158 43 chr6 125463500 125463734 -24053303 + L1MB3 LINE L1 5884 6144 -39 1 1542 310 274 65 9 chr6 125463811 125463918 -24053119 - MTEa LTR MaLR -103 276 164 1 1542 248 278 56 0 chr6 125463927 125463999 -24053038 - PB1D10 SINE Alu -1 116 41 1 1542 560 199 42 162 chr6 125464124 125464340 -24052697 + MLT1C LTR MaLR 269 458 -9 1 1542 243 0 0 0 chr6 125465486 125465513 -24051524 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 1542 2192 155 17 41 chr6 125465702 125466119 -24050918 + MTB_Mm LTR MaLR 1 407 0 1 1542 268 284 104 92 chr6 125466141 125466304 -24050733 + ORR1E LTR MaLR 90 254 -105 1 1542 2239 94 35 11 chr6 125467177 125467520 -24049517 + ORR1A2 LTR MaLR 1 319 -8 1 1542 806 246 41 83 chr6 125467545 125467768 -24049269 + B3A SINE B2 6 196 -2 1 1542 414 200 0 120 chr6 125467779 125467803 -24049234 + MT2B LTR ERVL 146 156 -445 1 1542 692 80 0 0 chr6 125467803 125467891 -24049146 + B1_Mus1 SINE Alu 1 88 -60 1 1542 2372 81 15 27 chr6 125469550 125469881 -24047156 - ORR1A2 LTR MaLR 0 327 1 1 1542 405 0 0 0 chr6 125471154 125471199 -24045838 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1542 367 221 13 0 chr6 125472371 125472448 -24044589 + PB1D7 SINE Alu 43 120 0 1 1542 347 312 77 15 chr6 125472502 125472632 -24044405 + Tigger5 DNA MER2_type 35 172 -2234 1 1542 476 312 70 7 chr6 125472855 125472997 -24044040 - RSINE1 SINE B4 -12 153 3 1 1542 785 229 74 19 chr6 125473070 125473293 -24043744 + B4A SINE B4 36 265 -27 1 1542 872 148 0 6 chr6 125473381 125473537 -24043500 + CT-rich Low_complexity Low_complexity 3 157 0 1 1542 979 179 36 5 chr6 125473592 125473788 -24043249 - Lx LINE L1 -1 6653 6452 1 1542 309 241 136 51 chr6 125474276 125474394 -24042643 + RMER15 LTR ERVL 356 483 -92 1 1542 225 328 16 0 chr6 125474395 125474456 -24042581 + B4A SINE B4 216 277 -15 1 1542 418 86 0 194 chr6 125474463 125474680 -24042357 + (CCTG)n Simple_repeat Simple_repeat 4 178 0 1 1542 1295 176 57 4 chr6 125475339 125475618 -24041419 - RMER10A LTR ERVL -19 423 130 1 1542 827 202 36 49 chr6 125475602 125475887 -24041150 - RMER10A LTR ERVL -113 285 4 1 1542 198 71 0 0 chr6 125476047 125476075 -24040962 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1542 670 275 7 0 chr6 125476088 125476230 -24040807 - RSINE1 SINE B4 -21 144 2 1 1542 367 340 81 5 chr6 125476443 125476629 -24040408 - L1MC LINE L1 -2232 5650 5451 1 1542 301 306 130 47 chr6 125476697 125476951 -24040086 - L1M5 LINE L1 -758 5388 5114 1 1542 273 119 0 0 chr6 125476965 125477007 -24040030 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1 1542 490 172 241 0 chr6 125477013 125477129 -24039908 - B1_Mur2 SINE Alu -4 145 2 1 1542 274 288 13 27 chr6 125477538 125477613 -24039424 + MLT1K LTR MaLR 51 124 -471 1 1542 259 288 43 35 chr6 125477916 125478031 -24039006 - PB1D10 SINE Alu -1 116 1 1 1542 1220 37 174 0 chr6 125478430 125478591 -24038446 - B2_Mm1a SINE B2 -4 189 1 1 1542 205 321 0 64 chr6 125479050 125479150 -24037887 + MIR SINE MIR 37 130 -146 1 1542 221 120 40 0 chr6 125479213 125479263 -24037774 + G-rich Low_complexity Low_complexity 2 53 0 1 1542 585 276 231 10 chr6 125480534 125480841 -24036196 - L1MC3 LINE L1 -206 7579 7205 1 1542 1016 150 0 0 chr6 125480847 125480994 -24036043 + B1_Mur3 SINE Alu 3 149 0 1 1542 408 244 148 0 chr6 125482280 125482395 -24034642 + MLT1J LTR MaLR 109 240 -272 1 1542 230 301 58 88 chr6 125482600 125482771 -24034266 + MLT1A0 LTR MaLR 1 166 -199 1 1542 453 36 0 0 chr6 125482816 125482871 -24034166 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 1 1542 235 275 149 78 chr6 125482877 125482895 -24034142 - B4A SINE B4 -46 246 229 1 1542 1272 47 0 0 chr6 125482895 125483043 -24033994 - B1_Mus1 SINE Alu 0 148 1 1 1542 307 227 241 18 chr6 125483045 125483157 -24033880 - B1F1 SINE Alu 0 149 13 1 1542 235 275 149 78 chr6 125483157 125483178 -24033859 - B4A SINE B4 -64 226 82 1 1542 597 271 0 15 chr6 125483623 125483758 -24033279 + RSINE1 SINE B4 3 135 -30 1 1542 223 171 0 0 chr6 125484063 125484098 -24032939 + L2 LINE L2 2683 2717 -702 1 1542 352 178 19 0 chr6 125484108 125484180 -24032857 - MTEa LTR MaLR -14 365 291 1 1542 308 43 22 0 chr6 125484355 125484401 -24032636 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1542 881 212 189 13 chr6 125484449 125484708 -24032329 - ORR1C2 LTR MaLR 0 384 61 1 1542 871 184 0 7 chr6 125484863 125485011 -24032026 - B1_Mus2 SINE Alu 0 147 1 1 1542 277 313 67 54 chr6 125485066 125485306 -24031731 + L1M5 LINE L1 5626 5868 -256 1 1542 28 0 0 0 chr6 125485441 125485469 -24031568 + AT_rich Low_complexity Low_complexity 1 28 0 1 1542 280 331 57 88 chr6 125485489 125485648 -24031389 + RSINE1 SINE B4 12 165 0 1 1542 268 263 57 133 chr6 125485577 125485735 -24031302 - RMER12 LTR ERVK -464 858 713 1 1542 640 265 170 16 chr6 125485834 125486087 -24030950 + B4A SINE B4 1 292 0 1 1542 345 125 0 0 chr6 125486094 125486150 -24030887 + (CACG)n Simple_repeat Simple_repeat 2 57 0 1 1542 378 236 0 0 chr6 125486302 125486425 -24030612 + (TA)n Simple_repeat Simple_repeat 2 124 0 1 1542 774 201 19 140 chr6 125486430 125486644 -24030393 - B3A SINE B2 -10 188 1 1 1542 401 206 0 0 chr6 125486696 125486764 -24030273 - B3A SINE B2 -96 102 35 1 1542 246 261 68 0 chr6 125486830 125486918 -24030119 + Tigger7 DNA MER2_type 24 117 -2374 1 1542 359 231 16 33 chr6 125486924 125487045 -24029992 + Tigger7 DNA MER2_type 2289 2407 -84 1 1542 585 223 65 16 chr6 125487081 125487204 -24029833 - B1F1 SINE Alu -6 143 15 1 1542 237 333 11 11 chr6 125487215 125487306 -24029731 + Tigger7 DNA MER2_type 2396 2486 -5 1 1542 368 326 170 8 chr6 125487318 125487565 -24029472 + L1ME3A LINE L1 5788 6074 -99 1 1542 278 189 142 62 chr6 125487657 125487770 -24029267 + LTR90B LTR LTR 632 753 -43 1 1542 312 27 0 0 chr6 125488069 125488106 -24028931 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1542 248 0 31 0 chr6 125488117 125488149 -24028888 + (CCA)n Simple_repeat Simple_repeat 1 33 0 1 1542 239 311 0 39 chr6 125488155 125488232 -24028805 + B1F1 SINE Alu 21 94 -23 1 1542 207 204 0 0 chr6 125488242 125488286 -24028751 + GA-rich Low_complexity Low_complexity 2 45 0 1 1542 313 172 108 29 chr6 125488314 125488416 -24028621 + L1M5 LINE L1 5217 5326 -820 1 1542 1024 45 67 0 chr6 125488975 125489109 -24027928 - B1_Mus1 SINE Alu 0 148 6 1 1542 342 45 0 0 chr6 125489413 125489457 -24027580 + (CATA)n Simple_repeat Simple_repeat 1 44 0 1 1542 997 297 94 11 chr6 125489495 125489931 -24027106 - Lx8 LINE L1 -96 7377 6906 1 1542 462 36 0 0 chr6 125490037 125490093 -24026944 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 1 1542 797 228 21 1 chr6 125490363 125490543 -24026494 + B3A SINE B2 3 185 -31 1 1542 540 281 52 26 chr6 125490543 125490773 -24026264 - Lx8 LINE L1 -626 6847 6612 1 1542 551 68 0 0 chr6 125490773 125490847 -24026190 + B1_Mur3 SINE Alu 76 149 0 1 1542 180 0 0 0 chr6 125490921 125490941 -24026096 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 1 1542 1758 290 88 14 chr6 125491047 125491715 -24025322 + Lx8 LINE L1 6509 7226 -247 1 1542 642 191 0 28 chr6 125491742 125491920 -24025117 + G-rich Low_complexity Low_complexity 4 176 0 1 1542 232 312 12 12 chr6 125492135 125492216 -24024821 - PB1D10 SINE Alu -1 116 36 1 1542 282 253 118 3 chr6 125492216 125492312 -24024725 - L1_Mur3 LINE L1 -785 5515 5391 1 1542 1471 64 27 0 chr6 125492312 125492500 -24024537 - B2_Mm1a SINE B2 0 193 1 1 1542 259 323 70 85 chr6 125492500 125492816 -24024221 - L1_Mur3 LINE L1 -490 5390 5075 1 1542 646 177 123 0 chr6 125493434 125493564 -24023473 - B1F SINE Alu -3 146 1 1 1542 289 268 14 0 chr6 125494044 125494137 -24022900 - ID4 SINE ID -58 94 1 1 1542 891 175 14 18 chr6 125495152 125495436 -24021601 + CT-rich Low_complexity Low_complexity 1 282 0 1 1542 624 211 0 27 chr6 125495436 125495468 -24021569 + polypyrimidine Low_complexity Low_complexity 150 180 0 1 1542 1280 34 0 0 chr6 125495468 125495614 -24021423 - B1_Mm SINE Alu 0 147 2 1 1542 624 211 0 27 chr6 125495614 125495766 -24021271 + CT-rich Low_complexity Low_complexity 1 149 0 1 1542 622 215 83 0 chr6 125495894 125496015 -24021022 + B1_Mur1 SINE Alu 2 132 -17 1 1542 1343 55 0 11 chr6 125496028 125496210 -24020827 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1542 487 165 35 0 chr6 125496611 125496696 -24020341 - B1_Mur1 SINE Alu -16 133 46 1 1542 238 297 69 10 chr6 125496711 125496813 -24020224 + MTEa LTR MaLR 259 366 -13 1 1542 892 221 23 6 chr6 125496908 125497085 -24019952 - B3A SINE B2 -18 180 1 1 1542 1512 229 25 25 chr6 125497088 125497447 -24019590 + MTEa LTR MaLR 7 365 -14 1 1542 308 202 228 0 chr6 125497761 125497840 -24019197 + MER81 DNA AcHobo 1 97 -17 1 1542 448 239 61 9 chr6 125498135 125498249 -24018788 + B1F SINE Alu 29 148 -1 1 1542 247 233 83 0 chr6 125498258 125498318 -24018719 + ID4_ SINE ID 2 66 -17 1 1542 288 0 0 0 chr6 125498318 125498350 -24018687 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 1 1542 21 0 0 0 chr6 125498974 125498995 -24018042 + AT_rich Low_complexity Low_complexity 1 21 0 1 1542 278 196 250 56 chr6 125499024 125499132 -24017905 - B3 SINE B2 -4 212 84 1 1542 882 222 46 32 chr6 125499181 125499400 -24017637 - ID_B1 SINE B4 -1 223 2 1 1542 236 266 86 75 chr6 125499621 125499722 -24017315 - L1MEe LINE L1 -4430 1654 1551 1 1542 1247 34 14 0 chr6 125499722 125499869 -24017168 - B1_Mur4 SINE Alu 0 150 2 1 1542 236 331 16 65 chr6 125499869 125499976 -24017061 - L1MEe LINE L1 -4445 1563 1455 1 1542 569 212 0 9 chr6 125500577 125500691 -24016346 - PB1D10 SINE Alu 0 117 5 1 1542 766 174 7 7 chr6 125500755 125500894 -24016143 - B3 SINE B2 -77 139 1 2 1542 288 0 0 0 chr6 125501146 125501178 -24015859 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1542 1972 142 102 30 chr6 125501481 125501503 -24015534 + MTC LTR MaLR 1 20 -401 4 1542 207 0 0 0 chr6 125501503 125501526 -24015511 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1542 1972 142 102 30 chr6 125501526 125501896 -24015141 + MTC LTR MaLR 21 421 0 4 1542 258 179 72 29 chr6 125502221 125502290 -24014747 + ID2 SINE ID 1 72 -11 6 1542 469 159 36 63 chr6 125502412 125502542 -24014495 - B1_Mur2 SINE Alu -3 146 8 7 1542 321 276 88 16 chr6 125503831 125503956 -24013081 - L2b LINE L2 -7 3368 3235 8 1542 339 25 0 0 chr6 125504316 125504356 -24012681 + (TTA)n Simple_repeat Simple_repeat 2 41 0 9 1542 228 236 63 45 chr6 125504793 125504904 -24012133 - MIRm SINE MIR -83 193 81 1 1542 212 318 57 0 chr6 125505916 125506004 -24011033 - MIRb SINE MIR -61 207 115 1 1542 1705 163 115 74 chr6 125506213 125506604 -24010433 + MTC LTR MaLR 15 421 0 1 1542 1131 134 108 10 chr6 125506804 125507007 -24010030 + URR1B DNA MER1_type 1 223 -2 1 1542 460 264 67 28 chr6 125507202 125507381 -24009656 - MER5A DNA MER1_type 0 189 4 1 1542 1735 152 105 15 chr6 125507385 125507643 -24009394 - MTC LTR MaLR -1 420 134 1 1542 180 0 0 0 chr6 125507643 125507663 -24009374 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 1 1542 1735 152 105 15 chr6 125507663 125507738 -24009299 - MTC LTR MaLR -288 133 57 1 1542 1742 131 140 57 chr6 125507791 125507961 -24009076 - ORR1C1 LTR MaLR 0 378 188 1 1542 473 0 18 0 chr6 125507961 125508018 -24009019 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1542 1742 131 140 57 chr6 125508018 125508196 -24008841 - ORR1C1 LTR MaLR -191 187 2 1 1542 428 256 165 35 chr6 125508564 125508734 -24008303 - B3A SINE B2 -4 194 3 1 1542 1071 284 97 10 chr6 125509056 125509429 -24007608 - MTE2a LTR MaLR -1 418 10 2 1542 543 128 0 0 chr6 125511527 125511613 -24005424 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 2 1542 1582 271 40 21 chr6 125512235 125512714 -24004323 + Lx6 LINE L1 6947 7434 -26 2 1542 316 278 44 11 chr6 125512863 125512954 -24004083 - PB1D10 SINE Alu 0 117 24 2 1542 243 283 0 0 chr6 125514348 125514401 -24002636 + polypyrimidine Low_complexity Low_complexity 1 53 0 2 1542 566 265 6 56 chr6 125514480 125514640 -24002397 - RSINE1 SINE B4 -11 154 3 2 1542 287 256 49 0 chr6 125516404 125516486 -24000551 - L1MEd LINE L1 -5366 753 668 2 1542 327 49 0 0 chr6 125516518 125516559 -24000478 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1542 943 80 25 10 chr6 125516559 125516704 -24000333 - B1_Mus2 SINE Alu -6 141 17 2 1542 238 194 28 0 chr6 125517084 125517156 -23999881 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1542 224 374 24 0 chr6 125517436 125517519 -23999518 - MIR3 SINE MIR -10 198 114 3 1542 484 276 189 20 chr6 125517714 125518036 -23999001 - MLT1C LTR MaLR -2 465 100 3 1542 189 0 0 0 chr6 125518375 125518396 -23998641 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1542 494 302 90 80 chr6 125518743 125519124 -23997913 - ORR1E LTR MaLR -4 366 1 3 1542 805 322 25 86 chr6 125519244 125519804 -23997233 - Lx9 LINE L1 -7 7637 7112 3 1542 1794 149 87 19 chr6 125519807 125520176 -23996861 - ORR1B1 LTR MaLR 0 394 1 3 1542 234 177 177 0 chr6 125520194 125520256 -23996781 - Lx7 LINE L1 -798 6898 6826 3 1542 6179 4 0 0 chr6 125521636 125522341 -23994696 - L1Md_A LINE L1 0 6582 5878 3 1542 495 216 10 0 chr6 125522626 125522723 -23994314 + MTD LTR MaLR 1 98 -321 3 1542 268 350 29 19 chr6 125524044 125524149 -23992888 - MER91B DNA Tip100 -1 189 84 3 1542 1140 181 5 31 chr6 125525475 125525697 -23991340 - B3 SINE B2 0 216 1 4 1542 391 248 72 7 chr6 125526362 125526500 -23990537 + MER2 DNA MER2_type 92 238 -107 4 1542 906 248 118 18 chr6 125527010 125527466 -23989571 + RMER5 LTR ERV1 33 534 0 4 1542 1112 55 14 0 chr6 125527873 125528019 -23989018 - B1_Mus1 SINE Alu 0 148 1 4 1542 373 350 99 35 chr6 125528762 125529194 -23987843 - MLT1J LTR MaLR -28 484 25 4 1542 1444 54 16 0 chr6 125529256 125529442 -23987595 + B2_Mm2 SINE B2 2 190 -5 4 1542 262 299 26 22 chr6 125529556 125529675 -23987362 - MER2 DNA MER2_type -64 281 160 4 1542 675 243 87 11 chr6 125529675 125529858 -23987179 - B3A SINE B2 -1 197 1 4 1542 243 309 36 22 chr6 125529858 125529877 -23987160 - MER2 DNA MER2_type -186 159 141 4 1542 360 0 0 0 chr6 125529878 125529918 -23987119 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1542 221 57 29 0 chr6 125529921 125529956 -23987081 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1542 718 178 19 38 chr6 125530136 125530294 -23986743 - RSINE1 SINE B4 0 165 11 5 1542 569 259 107 11 chr6 125530292 125530479 -23986558 - MER2 DNA MER2_type -119 226 22 4 1542 376 268 176 35 chr6 125530573 125530729 -23986308 - Charlie1a DNA MER1_type -8 1447 1278 5 1542 852 167 0 0 chr6 125530729 125530867 -23986170 + B1_Mus1 SINE Alu 2 139 -9 5 1542 376 268 176 35 chr6 125530867 125530965 -23986072 - Charlie1a DNA MER1_type -178 1277 1157 5 1542 241 288 0 0 chr6 125531086 125531145 -23985892 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1542 246 32 0 0 chr6 125531145 125531176 -23985861 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1542 1021 306 67 26 chr6 125531177 125531671 -23985366 - L1_Mur3 LINE L1 -50 5830 5317 5 1542 408 250 0 0 chr6 125531726 125531806 -23985231 - ID4_ SINE ID -1 82 3 5 1542 278 159 32 0 chr6 125531820 125531883 -23985154 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 5 1542 611 239 0 16 chr6 125531876 125532059 -23984978 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1542 453 293 71 85 chr6 125532065 125532360 -23984677 - B4 SINE B4 0 292 2 5 1542 434 248 45 9 chr6 125532362 125532472 -23984565 - PB1D10 SINE Alu -1 116 3 6 1542 216 0 0 0 chr6 125532484 125532508 -23984529 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1542 1283 241 90 85 chr6 125532839 125533319 -23983718 - RMER13A LTR ERVK -378 482 1 6 1542 185 0 0 39 chr6 125533355 125533381 -23983656 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1542 1237 80 17 0 chr6 125533381 125533557 -23983480 - B2_Mm1t SINE B2 -13 180 2 6 1542 272 272 76 42 chr6 125534032 125534151 -23982886 - ORR1E LTR MaLR -162 197 75 6 1542 726 83 0 27 chr6 125534208 125534320 -23982717 - B1_Mur3 SINE Alu 0 149 41 6 1542 468 150 0 0 chr6 125534320 125534400 -23982637 + (CCCCCG)n Simple_repeat Simple_repeat 6 85 0 6 1542 216 0 0 0 chr6 125536152 125536176 -23980861 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1542 185 367 11 22 chr6 125537917 125538009 -23979028 + MER5A DNA MER1_type 39 129 -60 6 1542 407 310 97 15 chr6 125542770 125542976 -23974061 - MIRb SINE MIR -26 242 20 7 1542 278 206 29 85 chr6 125544265 125544363 -23972674 - ORR1E LTR MaLR -252 107 11 7 1542 1275 194 181 3 chr6 125544897 125545222 -23971815 - MTD LTR MaLR -14 405 23 7 1542 630 0 0 0 chr6 125545222 125545292 -23971745 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 1542 215 252 157 9 chr6 125546007 125546115 -23970922 + MIRm SINE MIR 55 178 -98 7 1542 232 303 0 15 chr6 125546398 125546465 -23970572 + CT-rich Low_complexity Low_complexity 4 69 0 7 1542 1202 210 107 16 chr6 125550007 125550317 -23966720 - MTD LTR MaLR -49 370 33 7 1542 284 282 56 64 chr6 125551448 125551573 -23965464 - Charlie1b DNA MER1_type -4 519 396 7 1542 374 220 29 39 chr6 125551594 125551698 -23965339 + B1F SINE Alu 47 149 0 7 1542 815 299 34 51 chr6 125551730 125552086 -23964951 - Charlie1b DNA MER1_type -134 389 40 7 1542 432 0 0 0 chr6 125552166 125552214 -23964823 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1542 450 232 25 13 chr6 125552956 125553113 -23963924 + CT-rich Low_complexity Low_complexity 4 162 0 8 1542 466 309 8 8 chr6 125555184 125555311 -23961726 - B3 SINE B2 -88 128 2 8 1542 335 300 39 20 chr6 125555344 125555446 -23961591 - B1F SINE Alu 0 149 46 8 1542 293 232 34 79 chr6 125556425 125556514 -23960523 + L2c LINE L2 3266 3350 -37 8 1542 519 102 0 0 chr6 125556586 125556674 -23960363 + (TG)n Simple_repeat Simple_repeat 1 88 0 8 1542 200 229 0 62 chr6 125558952 125559017 -23958020 + GA-rich Low_complexity Low_complexity 3 63 0 8 1542 757 331 79 6 chr6 125559088 125559404 -23957633 - MER2 DNA MER2_type 0 345 7 8 1542 867 20 0 0 chr6 125559475 125559576 -23957461 + (TTCTC)n Simple_repeat Simple_repeat 4 104 0 8 1542 1473 54 5 0 chr6 125559576 125559761 -23957276 - L1_Mus2 LINE L1 -5 6561 6376 8 1542 366 61 0 0 chr6 125559850 125559899 -23957138 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1542 497 291 93 31 chr6 125559920 125560179 -23956858 + B4A SINE B4 2 276 -16 9 1542 1136 294 63 42 chr6 125560278 125560997 -23956040 - L1MB4 LINE L1 -26 6154 5473 9 1542 540 275 85 70 chr6 125560997 125561267 -23955770 - B4A SINE B4 -18 274 1 9 1542 1410 275 170 22 chr6 125561267 125562155 -23954882 - L1MB4 LINE L1 -831 5472 4458 9 1542 851 288 96 12 chr6 125562281 125562731 -23954306 - L1MA6 LINE L1 -335 5965 5488 9 1542 594 224 13 52 chr6 125562732 125562887 -23954150 - B1F SINE Alu 0 149 1 9 1542 310 241 137 68 chr6 125562923 125563172 -23953865 - L1MA6 LINE L1 -762 5381 5116 9 1542 203 250 21 0 chr6 125565272 125565320 -23951717 - L2a LINE L2 -64 3362 3314 9 1542 1037 259 166 25 chr6 125566528 125566884 -23950153 - MTD LTR MaLR -1 418 13 9 1543 989 135 13 20 chr6 125567155 125567306 -23949731 - B1_Mur4 SINE Alu 0 150 1 9 1543 23 33 0 0 chr6 125567987 125568017 -23949020 + AT_rich Low_complexity Low_complexity 1 30 0 9 1543 589 265 8 0 chr6 125568024 125568141 -23948896 - PB1 SINE Alu -9 118 1 9 1543 456 35 0 0 chr6 125568164 125568222 -23948815 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1543 261 0 0 0 chr6 125568947 125568976 -23948061 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1543 485 306 129 5 chr6 125568982 125569176 -23947861 + ID_B1 SINE B4 1 218 -6 1 1543 309 263 100 10 chr6 125569289 125569389 -23947648 - Charlie10 DNA MER1_type -21 2801 2693 1 1543 1373 214 62 46 chr6 125569411 125569536 -23947501 - ORR1D1 LTR MaLR 0 374 231 1 1543 1258 16 19 12 chr6 125569536 125569794 -23947243 + (CAGG)n Simple_repeat Simple_repeat 1 259 0 1 1543 1373 214 62 46 chr6 125569794 125570035 -23947002 - ORR1D1 LTR MaLR -144 230 2 1 1543 459 138 0 0 chr6 125570106 125570193 -23946844 + (TCCA)n Simple_repeat Simple_repeat 1 87 0 1 1543 21 0 0 0 chr6 125570482 125570503 -23946534 + GC_rich Low_complexity Low_complexity 1 21 0 1 1543 303 299 10 30 chr6 125570808 125570908 -23946129 - B1F SINE Alu 0 149 52 1 1543 198 330 62 21 chr6 125571187 125571283 -23945754 + L3 LINE CR1 826 925 -3564 1 1543 278 136 34 0 chr6 125572730 125572789 -23944248 - RMER1A Other Other 0 1030 970 1 1543 366 23 0 0 chr6 125573081 125573124 -23943913 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1543 216 0 0 0 chr6 125573928 125573952 -23943085 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1543 210 91 0 0 chr6 125574947 125574980 -23942057 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 1 1543 235 316 0 0 chr6 125574982 125575039 -23941998 + polypyrimidine Low_complexity Low_complexity 3 59 0 1 1543 317 284 38 23 chr6 125575144 125575351 -23941686 - L1MA4 LINE L1 -290 6013 5804 1 1543 621 126 114 0 chr6 125575989 125576119 -23940918 - B1_Mus2 SINE Alu -2 147 1 1 1543 347 0 23 0 chr6 125576125 125576168 -23940869 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1543 384 241 0 0 chr6 125577735 125577851 -23939186 + (TA)n Simple_repeat Simple_repeat 2 117 0 1 1543 482 276 4 0 chr6 125577850 125578121 -23938916 + (TG)n Simple_repeat Simple_repeat 1 272 0 1 1543 256 253 76 98 chr6 125578814 125578906 -23938131 - MER44C DNA MER2_type 0 733 644 1 1543 2221 100 6 6 chr6 125578923 125579234 -23937803 - MTC LTR MaLR -8 413 103 1 1543 1022 194 47 39 chr6 125579258 125579516 -23937521 - RMER1C Other Other -61 1281 1022 1 1543 302 148 98 0 chr6 125579519 125579580 -23937457 - MTC LTR MaLR -340 81 15 1 1543 244 293 71 0 chr6 125579576 125579675 -23937362 - Tigger7 DNA MER2_type -115 2376 2271 1 1543 190 95 23 23 chr6 125579729 125579772 -23937265 + (CAAAAA)n Simple_repeat Simple_repeat 4 46 0 1 1543 1086 270 39 18 chr6 125581678 125581964 -23935073 - B4 SINE B4 0 292 1 1 1543 183 80 0 0 chr6 125582284 125582309 -23934728 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1543 257 378 0 0 chr6 125582309 125582399 -23934638 + (CATG)n Simple_repeat Simple_repeat 3 92 0 1 1543 316 348 0 0 chr6 125582403 125582495 -23934542 - MLT1D LTR MaLR -16 611 520 1 1543 422 297 133 70 chr6 125582473 125582759 -23934278 - MLT1D LTR MaLR -120 385 82 1 1543 279 313 146 52 chr6 125583033 125583063 -23933974 - B3 SINE B2 -6 210 181 1 1543 1040 68 23 0 chr6 125583063 125583239 -23933798 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1543 486 234 92 72 chr6 125583242 125583394 -23933643 - RSINE1 SINE B4 0 165 11 1 1543 207 0 0 0 chr6 125583409 125583432 -23933605 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1543 275 324 73 9 chr6 125583503 125583612 -23933425 - ORR1E LTR MaLR -220 139 24 1 1543 5212 9 0 0 chr6 125583693 125584260 -23932777 - L1Md_T LINE L1 0 6582 6016 1 1543 3348 46 2 2 chr6 125584389 125584785 -23932252 - MTA_Mm LTR MaLR 0 396 1 1 1543 189 0 0 0 chr6 125586680 125586701 -23930336 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1543 678 25 0 0 chr6 125588467 125588547 -23928490 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 1 1543 1006 87 23 11 chr6 125588547 125588721 -23928316 + (TTTCC)n Simple_repeat Simple_repeat 5 180 0 1 1543 322 196 0 0 chr6 125588737 125588793 -23928244 - PB1D10 SINE Alu -17 100 45 1 1543 1185 131 0 4 chr6 125589524 125589976 -23927061 + (TCCA)n Simple_repeat Simple_repeat 1 450 0 1 1543 189 245 0 0 chr6 125589993 125590042 -23926995 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 1 1543 459 63 0 0 chr6 125591826 125591889 -23925148 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1543 643 164 76 17 chr6 125594068 125594186 -23922851 - B1_Mur2 SINE Alu -1 148 24 1 1543 243 0 0 0 chr6 125594227 125594254 -23922783 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 1543 360 274 10 78 chr6 125594344 125594447 -23922590 - B1F SINE Alu -5 144 30 1 1543 210 191 0 0 chr6 125594909 125594951 -23922086 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1543 272 317 25 8 chr6 125594966 125595087 -23921950 - L1MA5A LINE L1 -358 5939 5817 1 1543 327 104 0 0 chr6 125595279 125595327 -23921710 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 1 1543 354 327 0 0 chr6 125596480 125596575 -23920462 - ID4_ SINE ID -57 95 1 1 1543 237 318 11 23 chr6 125596585 125596672 -23920365 + L2a LINE L2 2275 2360 -1059 1 1543 181 346 198 20 chr6 125596683 125596847 -23920190 + L2a LINE L2 2472 2657 -762 1 1543 1417 70 0 31 chr6 125596847 125597038 -23919999 + B2_Mm2 SINE B2 3 187 -8 1 1543 230 311 130 18 chr6 125597038 125597393 -23919644 + L2a LINE L2 2658 3124 -302 1 1543 275 323 121 43 chr6 125597405 125597612 -23919425 + L2a LINE L2 3182 3404 -22 1 1543 377 317 164 18 chr6 125599776 125600001 -23917036 - LTR78 LTR ERV1 -17 1287 1030 1 1543 351 0 0 0 chr6 125600235 125600274 -23916763 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1543 427 329 139 19 chr6 125600848 125601328 -23915709 - L1MC4 LINE L1 -824 7218 6282 1 1543 355 253 6 55 chr6 125601588 125601751 -23915286 - L1MC4 LINE L1 -4643 1572 1418 1 1543 405 0 0 0 chr6 125601998 125602043 -23914994 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1543 226 203 197 30 chr6 125602338 125602470 -23914567 - L1MC4 LINE L1 -5242 973 820 1 1543 233 284 90 0 chr6 125602727 125602794 -23914243 - ID4_ SINE ID -10 73 1 1 1543 817 191 97 11 chr6 125603153 125603338 -23913699 + B3 SINE B2 1 201 -15 1 1543 540 45 0 0 chr6 125603340 125603407 -23913630 + (GAAA)n Simple_repeat Simple_repeat 4 70 0 1 1543 271 275 20 89 chr6 125603911 125604064 -23912973 - MTEa LTR MaLR -20 388 263 1 1543 1346 280 26 33 chr6 125605627 125606055 -23910982 + ORSL-2b DNA Tip100 61 485 -23 1 1543 1587 138 0 0 chr6 125606370 125606595 -23910442 + URR1B DNA MER1_type 1 225 0 1 1543 204 311 64 64 chr6 125607418 125607528 -23909509 + MIRc SINE MIR 113 222 -46 1 1543 417 353 95 66 chr6 125608373 125608646 -23908391 - MLT1J LTR MaLR -227 285 5 1 1543 281 221 182 0 chr6 125609018 125609095 -23907942 + MIRb SINE MIR 2 92 -176 1 1543 313 271 82 27 chr6 125609291 125609401 -23907636 + MER103 DNA DNA 5 120 -46 1 1543 213 39 0 0 chr6 125609434 125609460 -23907577 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1543 216 292 21 63 chr6 125609555 125609650 -23907387 - MIRb SINE MIR -159 109 19 1 1543 22 0 0 0 chr6 125611926 125611948 -23905089 + AT_rich Low_complexity Low_complexity 1 22 0 1 1543 231 200 0 35 chr6 125612122 125612179 -23904858 + T-rich Low_complexity Low_complexity 2 56 0 1 1543 369 161 11 22 chr6 125612201 125612290 -23904747 + CT-rich Low_complexity Low_complexity 3 90 0 1 1543 603 74 0 0 chr6 125612282 125612363 -23904674 + (TTTC)n Simple_repeat Simple_repeat 3 83 0 1 1543 1154 106 0 11 chr6 125612370 125612552 -23904485 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1543 258 156 0 0 chr6 125612553 125612598 -23904439 + CT-rich Low_complexity Low_complexity 3 47 0 1 1543 258 273 65 54 chr6 125612602 125612695 -23904342 - PB1D10 SINE Alu -21 99 6 1 1543 240 315 11 43 chr6 125612613 125612706 -23904331 - ID_B1 SINE B4 -59 165 76 1 1543 234 116 0 0 chr6 125613819 125613862 -23903175 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1543 410 0 20 0 chr6 125614060 125614110 -23902927 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1543 196 286 118 39 chr6 125614228 125614330 -23902707 - L2 LINE L2 -2537 882 773 1 1543 226 290 57 47 chr6 125614490 125614627 -23902410 - MIRc SINE MIR -3 205 72 1 1543 600 53 0 0 chr6 125614680 125614756 -23902281 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1 1543 489 110 0 0 chr6 125614829 125614902 -23902135 + (TCCC)n Simple_repeat Simple_repeat 1 73 0 1 1543 904 257 11 0 chr6 125615478 125615653 -23901384 + B3 SINE B2 21 197 -19 1 1543 224 30 30 0 chr6 125616396 125616429 -23900608 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1 1543 312 120 0 0 chr6 125617155 125617205 -23899832 + (CCCA)n Simple_repeat Simple_repeat 3 52 0 1 1543 273 98 0 0 chr6 125617711 125617752 -23899285 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 1 1543 330 26 0 0 chr6 125617832 125617871 -23899166 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1543 5008 64 0 2 chr6 125617905 125618530 -23898507 + L1_Mus1 LINE L1 5940 6563 -4 1 1543 22 35 0 0 chr6 125618534 125618563 -23898474 + AT_rich Low_complexity Low_complexity 1 29 0 1 1543 444 198 11 42 chr6 125618778 125618873 -23898164 - MLT1A1 LTR MaLR -286 122 31 1 1543 798 304 41 62 chr6 125619771 125620309 -23896728 - Lx7 LINE L1 -60 7413 6857 1 1543 498 243 9 0 chr6 125620940 125621047 -23895990 - PB1D10 SINE Alu -6 111 4 1 1543 509 245 127 19 chr6 125621312 125621470 -23895567 + ORR1E LTR MaLR 3 177 -182 1 1543 832 181 187 0 chr6 125622644 125622826 -23894211 - B3 SINE B2 0 216 1 1 1543 288 353 33 118 chr6 125623053 125623384 -23893653 - ORR1E LTR MaLR -5 354 52 1 1543 207 114 0 0 chr6 125623825 125623860 -23893177 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1543 412 361 28 28 chr6 125624125 125624339 -23892698 - LTR85a LTR Gypsy? -18 684 471 1 1543 239 381 77 60 chr6 125624693 125624821 -23892216 - Lx8 LINE L1 0 7473 7340 1 1543 450 0 0 0 chr6 125624821 125624871 -23892166 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1543 239 381 77 60 chr6 125624871 125625027 -23892010 - Lx8 LINE L1 -134 7339 7184 1 1543 2539 212 34 13 chr6 125625052 125625586 -23891451 - RMER15 LTR ERVL -2 573 29 1 1543 1112 276 39 12 chr6 125625684 125626021 -23891016 - Lx8 LINE L1 -311 7162 6817 1 1543 494 240 29 9 chr6 125626051 125626156 -23890881 - PB1D10 SINE Alu -5 112 6 2 1543 262 277 48 87 chr6 125626078 125626181 -23890856 - MT2B2 LTR ERVL -340 244 146 2 1543 227 215 0 15 chr6 125627120 125627186 -23889851 + CT-rich Low_complexity Low_complexity 3 67 0 2 1543 448 267 9 0 chr6 125627194 125627299 -23889738 - PB1D10 SINE Alu -1 116 11 2 1543 303 294 11 0 chr6 125627221 125627313 -23889724 - ID_B1 SINE B4 -55 169 77 2 1543 472 322 12 92 chr6 125629812 125629976 -23887061 + B4A SINE B4 1 151 -141 2 1543 776 221 76 18 chr6 125630020 125630239 -23886798 - ORR1B1 LTR MaLR -155 212 8 2 1543 936 162 0 0 chr6 125631259 125631426 -23885611 + CT-rich Low_complexity Low_complexity 4 170 0 2 1543 195 129 0 0 chr6 125631467 125631498 -23885539 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1543 329 162 84 36 chr6 125631508 125631591 -23885446 - B4 SINE B4 -55 237 151 2 1543 956 133 0 12 chr6 125631591 125631758 -23885279 + (TTTTC)n Simple_repeat Simple_repeat 3 167 0 2 1543 927 124 0 28 chr6 125631760 125631901 -23885136 - B1_Mur4 SINE Alu -13 137 1 2 1543 330 26 0 0 chr6 125631991 125632030 -23885007 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1543 413 317 106 53 chr6 125632075 125632545 -23884492 - L2 LINE L2 -565 2854 2360 2 1543 182 93 43 85 chr6 125633520 125633567 -23883470 - L3 LINE CR1 -2348 2141 2097 2 1543 183 186 0 0 chr6 125634065 125634108 -23882929 + T-rich Low_complexity Low_complexity 1 43 0 2 1543 311 307 138 24 chr6 125637147 125637357 -23879680 + MIRc SINE MIR 25 258 -10 2 1543 301 281 73 63 chr6 125637764 125637928 -23879109 - MIR3 SINE MIR -2 206 49 2 1543 1833 208 65 8 chr6 125638471 125638854 -23878183 - MTD LTR MaLR -14 405 1 2 1543 1050 262 107 21 chr6 125638973 125639314 -23877723 + MTD LTR MaLR 10 374 -45 2 1543 465 66 0 0 chr6 125639314 125639375 -23877662 + (CAG)n Simple_repeat Simple_repeat 2 62 0 2 1543 263 317 111 58 chr6 125639375 125639411 -23877626 + MTD LTR MaLR 345 374 -5 2 1543 575 250 0 8 chr6 125641490 125641735 -23875302 + (TG)n Simple_repeat Simple_repeat 1 242 0 2 1543 213 154 0 0 chr6 125642410 125642449 -23874588 + (TTAGGG)n Simple_repeat Simple_repeat 6 44 0 2 1543 191 371 41 10 chr6 125642573 125642671 -23874366 - MIRc SINE MIR -79 189 89 2 1543 238 274 153 31 chr6 125642996 125643094 -23873943 - L4 LINE RTE -179 1850 1741 2 1543 402 292 28 19 chr6 125643117 125643225 -23873812 + PB1D10 SINE Alu 1 109 -8 2 1543 197 0 71 0 chr6 125643288 125643316 -23873721 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2 1543 302 232 87 0 chr6 125643317 125643386 -23873651 - BC1_Mm scRNA scRNA -77 75 1 2 1543 769 183 166 37 chr6 125643499 125643686 -23873351 - B3 SINE B2 -5 211 1 2 1543 313 312 145 48 chr6 125643850 125643882 -23873155 - B4 SINE B4 -47 245 87 2 1543 325 274 257 0 chr6 125643882 125643995 -23873042 - B1F SINE Alu -6 143 2 2 1543 396 319 38 18 chr6 125644320 125644629 -23872408 - L1M4c LINE L1 -4918 1560 1186 2 1543 1207 297 74 19 chr6 125644773 125645302 -23871735 - L1MB7 LINE L1 -166 6018 5461 2 1543 259 284 30 59 chr6 125645564 125645665 -23871372 + L4 LINE RTE 583 680 -1349 2 1543 304 309 61 76 chr6 125645750 125646118 -23870919 - MTEb LTR MaLR 0 379 13 2 1543 949 131 65 50 chr6 125646118 125646319 -23870718 - Lx LINE L1 0 6654 6451 2 1543 598 304 109 28 chr6 125646515 125646799 -23870238 + MLT1J1 LTR MaLR 9 315 -129 2 1543 181 200 0 0 chr6 125647100 125647130 -23869907 + L2c LINE L2 3338 3367 -20 2 1543 421 299 7 74 chr6 125647162 125647316 -23869721 + B4 SINE B4 11 151 -73 2 1543 2190 84 94 0 chr6 125647362 125647660 -23869377 - ORR1A1 LTR MaLR 0 326 1 2 1543 9373 146 103 44 chr6 125647660 125649514 -23867523 - ORR1A1-int LTR MaLR 0 1963 1 2 1543 2277 116 9 6 chr6 125649518 125649855 -23867182 - ORR1A1 LTR MaLR -8 338 1 2 1543 207 139 0 0 chr6 125649954 125649990 -23867047 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 1543 270 0 0 0 chr6 125649991 125650021 -23867016 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1543 643 263 50 23 chr6 125650067 125650116 -23866921 + L1M4 LINE L1 5169 5219 -927 2 1543 3592 15 2 0 chr6 125650116 125650511 -23866526 + MTA_Mm LTR MaLR 1 396 0 2 1543 643 250 70 4 chr6 125650511 125650710 -23866327 + L1M4 LINE L1 5220 5427 -747 2 1543 646 152 13 0 chr6 125650884 125651042 -23865995 + GA-rich Low_complexity Low_complexity 1 160 0 2 1543 207 0 0 0 chr6 125651042 125651065 -23865972 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1543 333 0 0 0 chr6 125651065 125651102 -23865935 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1543 329 244 12 25 chr6 125651510 125651590 -23865447 + MIR SINE MIR 149 227 -35 2 1543 239 268 93 47 chr6 125651625 125651711 -23865326 + MLT1C LTR MaLR 1 90 -377 2 1543 249 57 0 0 chr6 125652443 125652478 -23864559 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1543 707 144 8 0 chr6 125652499 125652624 -23864413 + GA-rich Low_complexity Low_complexity 1 126 0 2 1543 5630 199 59 16 chr6 125652658 125653761 -23863276 - Lx6 LINE L1 -18 7442 6293 2 1543 578 241 17 0 chr6 125653951 125654067 -23862970 - B1F SINE Alu -8 141 24 2 1543 477 0 0 0 chr6 125654472 125654525 -23862512 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1543 226 319 169 40 chr6 125654803 125654927 -23862110 - MamGypLTR2c LTR Gypsy -670 398 259 2 1543 2071 93 60 45 chr6 125655168 125655482 -23861555 - ORR1A2 LTR MaLR -8 319 1 2 1543 1657 301 64 49 chr6 125655495 125656447 -23860590 - L1M2 LINE L1 -1594 4549 3584 2 1543 263 279 0 0 chr6 125656570 125656638 -23860399 - Lx8 LINE L1 -379 7094 7027 2 1543 306 328 84 0 chr6 125656689 125656808 -23860229 - L1M2 LINE L1 -2569 3574 3446 2 1543 793 225 25 35 chr6 125656822 125657020 -23860017 + Lx8 LINE L1 6904 7099 -374 2 1543 237 337 109 63 chr6 125657020 125657401 -23859636 - L2 LINE L2 -655 2764 2363 2 1543 2029 146 14 63 chr6 125657401 125657832 -23859205 - RMER17C LTR ERVK 0 410 1 2 1543 237 337 109 63 chr6 125657832 125657881 -23859156 - L2 LINE L2 -1057 2362 2315 2 1543 1255 253 62 15 chr6 125658952 125659293 -23857744 - ORR1E LTR MaLR -2 357 1 2 1543 195 42 0 0 chr6 125661287 125661311 -23855726 + (GGA)n Simple_repeat Simple_repeat 2 25 0 2 1543 315 150 0 0 chr6 125661689 125661749 -23855288 + (TCTG)n Simple_repeat Simple_repeat 4 63 0 2 1543 774 109 0 0 chr6 125661750 125661887 -23855150 + (TC)n Simple_repeat Simple_repeat 2 138 0 2 1543 300 27 0 0 chr6 125661910 125661947 -23855090 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1543 224 149 21 0 chr6 125662952 125662999 -23854038 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1543 273 109 0 0 chr6 125663069 125663115 -23853922 + (CCCA)n Simple_repeat Simple_repeat 3 48 0 2 1543 336 334 125 54 chr6 125663157 125663600 -23853437 + L2a LINE L2 2919 3424 -2 2 1543 204 309 99 80 chr6 125663588 125663739 -23853298 + MIRb SINE MIR 98 251 -17 2 1543 195 318 0 0 chr6 125663708 125663752 -23853285 + L2a LINE L2 3375 3418 -8 2 1543 1637 261 53 21 chr6 125663765 125664372 -23852665 - Lx7 LINE L1 -16 7680 6912 2 1543 197 330 43 21 chr6 125664859 125664952 -23852085 + MIRb SINE MIR 129 223 -45 2 1543 272 293 20 0 chr6 125664977 125665076 -23851961 + MER53 DNA hAT 2 102 -91 2 1543 1009 234 57 17 chr6 125665532 125665828 -23851209 - L1MC3 LINE L1 -1 7784 7477 2 1543 569 186 8 0 chr6 125666443 125666572 -23850465 + CT-rich Low_complexity Low_complexity 3 132 0 2 1543 303 121 0 0 chr6 125667637 125667695 -23849342 + (T)n Simple_repeat Simple_repeat 1 58 0 2 1543 218 316 0 73 chr6 125669788 125669870 -23847167 - L2c LINE L2 -17 3370 3295 2 1543 1016 255 46 99 chr6 125670124 125670516 -23846521 - MTEa LTR MaLR -6 373 3 2 1543 330 295 44 78 chr6 125670832 125671038 -23845999 + Charlie4a DNA MER1_type 157 355 -153 2 1543 366 129 0 0 chr6 125671041 125671103 -23845934 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1543 824 244 138 36 chr6 125671117 125671364 -23845673 - B4A SINE B4 0 292 21 2 1543 257 228 25 12 chr6 125671930 125672010 -23845027 + ID4 SINE ID 2 82 -1 2 1543 399 303 0 15 chr6 125672694 125672828 -23844209 + MTD LTR MaLR 1 132 -287 2 1543 1552 173 59 3 chr6 125672873 125673163 -23843874 + MTD LTR MaLR 108 413 -6 2 1543 2068 232 22 0 chr6 125674084 125674489 -23842548 - MTC LTR MaLR -7 414 1 2 1543 8311 41 1 5 chr6 125674592 125675698 -23841339 - L1Md_F2 LINE L1 -2 6580 5480 2 1543 6529 62 4 0 chr6 125675696 125676530 -23840507 + L1Md_F2 LINE L1 4615 5451 -432 2 1543 1005 220 9 23 chr6 125676533 125676752 -23840285 - B3 SINE B2 0 216 1 2 1543 378 0 0 0 chr6 125677490 125677532 -23839505 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1543 269 136 0 48 chr6 125678115 125678177 -23838860 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 2 1543 185 206 0 0 chr6 125679263 125679297 -23837740 - L3b LINE CR1 -200 282 249 2 1543 239 308 25 13 chr6 125680578 125680657 -23836380 - MIR3 SINE MIR -15 193 114 2 1543 565 186 35 0 chr6 125681719 125681832 -23835205 - PB1D9 SINE Alu -2 118 2 2 1543 1259 62 6 0 chr6 125682309 125682487 -23834550 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1543 1294 63 3 6 chr6 125682502 125682841 -23834196 + (CA)n Simple_repeat Simple_repeat 1 337 0 2 1543 947 264 134 60 chr6 125682893 125683408 -23833629 - Lx8 LINE L1 0 7473 6921 2 1543 385 324 74 68 chr6 125683426 125683641 -23833396 - L1MD2 LINE L1 -4770 1870 1649 2 1543 910 95 331 17 chr6 125683641 125683813 -23833224 + URR1A DNA MER1_type 1 226 0 2 1543 385 311 112 52 chr6 125683813 125684013 -23833024 - L1MD2 LINE L1 -4984 1656 1437 2 1543 284 261 0 0 chr6 125684135 125684200 -23832837 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1543 615 244 32 38 chr6 125684202 125684360 -23832677 - RSINE1 SINE B4 0 165 9 2 1543 311 315 76 7 chr6 125684494 125684638 -23832399 - L1MD2 LINE L1 -5456 1184 1031 2 1543 639 267 22 13 chr6 125684689 125684847 -23832190 - ID_B1 SINE B4 -1 223 69 2 1543 453 273 51 45 chr6 125684866 125685023 -23832014 - L1MD2 LINE L1 -5604 943 786 2 1543 23 0 0 0 chr6 125685494 125685517 -23831520 + AT_rich Low_complexity Low_complexity 1 23 0 2 1543 602 265 92 57 chr6 125685574 125685780 -23831257 - RMER10A LTR ERVL -18 424 212 3 1543 3413 164 189 38 chr6 125685780 125686564 -23830473 + RMER19B LTR ERVK 1 902 0 3 1543 602 265 92 57 chr6 125686564 125686693 -23830344 - RMER10A LTR ERVL -231 211 78 3 1543 486 0 0 0 chr6 125686972 125687026 -23830011 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1543 3404 287 65 76 chr6 125687042 125689409 -23827628 - Lx8 LINE L1 -1800 5896 3532 2 1543 281 330 108 9 chr6 125689867 125690264 -23826773 - Lx8 LINE L1 -2586 3557 3102 2 1543 676 298 68 22 chr6 125690258 125690536 -23826501 - Lx8 LINE L1 -180 7293 7003 3 1543 591 342 77 15 chr6 125690759 125690955 -23826082 - ID_B1 SINE B4 -8 216 9 3 1543 207 196 0 21 chr6 125690964 125691011 -23826026 + T-rich Low_complexity Low_complexity 1 46 0 3 1543 611 162 30 0 chr6 125691673 125691772 -23825265 + B1_Mus2 SINE Alu 25 126 -21 3 1543 24 53 0 0 chr6 125691976 125692014 -23825023 + AT_rich Low_complexity Low_complexity 1 38 0 3 1543 1625 259 42 31 chr6 125693850 125694328 -23822709 + Lx6 LINE L1 6945 7427 -33 3 1543 348 24 0 0 chr6 125694329 125694370 -23822667 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1543 376 336 103 61 chr6 125694588 125694899 -23822138 - LTR31 LTR ERV1 0 619 296 3 1543 236 157 0 19 chr6 125694906 125694958 -23822079 - L1MB3 LINE L1 -222 5961 5911 3 1543 426 248 91 67 chr6 125695566 125695774 -23821263 - L1MB3 LINE L1 -146 6037 5825 3 1543 912 285 66 30 chr6 125696155 125696550 -23820487 - L1MB1 LINE L1 -95 6094 5686 3 1543 210 196 0 42 chr6 125697078 125697126 -23819911 + G-rich Low_complexity Low_complexity 5 50 0 3 1543 284 209 10 104 chr6 125697144 125697240 -23819797 + MIRb SINE MIR 182 268 0 3 1544 1149 250 103 36 chr6 125698135 125698589 -23818448 + Lx7 LINE L1 7216 7678 -18 3 1544 252 149 0 0 chr6 125698589 125698636 -23818401 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 3 1544 210 143 0 0 chr6 125699159 125699194 -23817843 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 3 1544 690 174 24 20 chr6 125699195 125699443 -23817594 + CT-rich Low_complexity Low_complexity 1 249 0 3 1544 207 204 0 0 chr6 125699455 125699499 -23817538 + C-rich Low_complexity Low_complexity 4 47 0 3 1544 371 230 23 0 chr6 125699499 125699586 -23817451 + CT-rich Low_complexity Low_complexity 4 92 0 3 1544 578 254 16 0 chr6 125699820 125699946 -23817091 - B1F1 SINE Alu 0 149 22 3 1544 657 0 0 0 chr6 125701150 125701223 -23815814 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1544 305 64 43 0 chr6 125702564 125702611 -23814426 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 3 1544 342 0 0 0 chr6 125702788 125702826 -23814211 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 3 1544 377 318 71 8 chr6 125704247 125704374 -23812663 - MIR SINE MIR -86 176 42 3 1544 611 273 113 9 chr6 125704466 125704673 -23812364 - MLT1C LTR MaLR -33 434 204 3 1544 492 48 0 0 chr6 125704673 125704736 -23812301 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1544 611 319 66 100 chr6 125704736 125704861 -23812176 - MLT1C LTR MaLR -264 203 43 3 1544 230 289 13 13 chr6 125705424 125705501 -23811536 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1544 396 0 0 0 chr6 125706335 125706379 -23810658 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1544 456 126 0 0 chr6 125706379 125706466 -23810571 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 1544 531 305 114 4 chr6 125706557 125706794 -23810243 - B4A SINE B4 -22 270 8 3 1544 500 297 48 6 chr6 125706806 125706972 -23810065 + MER58A DNA MER1_type 46 218 -6 3 1544 1637 220 18 62 chr6 125707139 125707526 -23809511 - MTEb LTR MaLR -2 377 8 3 1544 284 205 0 12 chr6 125708038 125708084 -23808953 + polypyrimidine Low_complexity Low_complexity 40 84 0 3 1544 477 90 0 0 chr6 125708084 125708151 -23808886 + (CCA)n Simple_repeat Simple_repeat 3 69 0 3 1544 284 205 0 12 chr6 125708151 125708188 -23808849 + polypyrimidine Low_complexity Low_complexity 3 39 0 3 1544 788 101 115 8 chr6 125708190 125708320 -23808717 - B1_Mm SINE Alu -3 144 1 3 1544 715 138 13 0 chr6 125709126 125709278 -23807759 + GA-rich Low_complexity Low_complexity 1 154 0 3 1544 226 284 51 31 chr6 125709867 125709965 -23807072 - L1MA6 LINE L1 -7 6293 6194 3 1544 789 106 16 16 chr6 125709981 125710106 -23806931 - URR1B DNA MER1_type 0 225 101 3 1544 1051 184 5 62 chr6 125712241 125712450 -23804587 - B3A SINE B2 0 198 2 3 1544 185 368 41 89 chr6 125713355 125713501 -23803536 - MIRb SINE MIR -18 250 112 3 1544 567 0 0 0 chr6 125714951 125715014 -23802023 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 3 1544 186 43 0 0 chr6 125715036 125715059 -23801978 + (GGA)n Simple_repeat Simple_repeat 3 25 0 3 1544 1168 51 0 0 chr6 125715410 125715547 -23801490 - B1_Mus1 SINE Alu -11 137 1 3 1544 28 48 0 0 chr6 125716983 125717025 -23800012 + AT_rich Low_complexity Low_complexity 1 42 0 3 1544 1182 262 91 33 chr6 125717038 125717616 -23799421 - L1M2 LINE L1 -872 5428 4826 3 1544 254 281 140 0 chr6 125717722 125717836 -23799201 - L1MA10 LINE L1 -11 6323 6194 3 1544 21 36 0 0 chr6 125717889 125717917 -23799120 + AT_rich Low_complexity Low_complexity 1 28 0 3 1544 249 389 89 6 chr6 125720189 125720347 -23796690 - L2b LINE L2 -15 3360 3190 3 1544 861 62 0 0 chr6 125720616 125720728 -23796309 + (GGA)n Simple_repeat Simple_repeat 2 113 0 3 1544 3083 246 51 41 chr6 125720743 125721273 -23795764 - RCHARR1 DNA MER1_type 0 974 310 3 1544 963 0 0 0 chr6 125721273 125721380 -23795657 + (CAAAG)n Simple_repeat Simple_repeat 1 107 0 3 1544 3083 236 55 34 chr6 125721380 125721682 -23795355 - RCHARR1 DNA MER1_type -665 309 4 3 1544 227 360 70 31 chr6 125722394 125722523 -23794514 - MIRb SINE MIR -130 138 5 3 1544 226 220 67 17 chr6 125723300 125723360 -23793677 - MLT1L LTR MaLR -546 64 2 3 1544 659 334 69 28 chr6 125723399 125723790 -23793247 - Charlie25 DNA MER1_type -5 2519 2113 3 1544 314 330 202 9 chr6 125724140 125724204 -23792833 - Charlie25 DNA MER1_type -738 1786 1715 3 1544 1115 88 6 0 chr6 125724204 125724374 -23792663 + (TG)n Simple_repeat Simple_repeat 2 172 0 3 1544 314 330 202 9 chr6 125724374 125724651 -23792386 - Charlie25 DNA MER1_type -810 1714 1381 3 1544 380 296 316 14 chr6 125724893 125725380 -23791657 - Charlie25 DNA MER1_type -1493 1031 398 3 1544 242 303 0 0 chr6 125725438 125725504 -23791533 - Charlie25 DNA MER1_type -2230 294 229 3 1544 180 0 0 0 chr6 125726087 125726107 -23790930 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 3 1544 333 264 45 54 chr6 125727236 125727348 -23789689 - PB1D7 SINE Alu -9 111 1 3 1544 318 347 63 29 chr6 125728190 125728365 -23788672 + MIRc SINE MIR 15 195 -73 3 1544 333 0 0 0 chr6 125729676 125729713 -23787324 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1544 306 0 0 0 chr6 125729978 125730012 -23787025 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1544 185 65 0 31 chr6 125730547 125730579 -23786458 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 3 1544 22 0 0 0 chr6 125730795 125730817 -23786220 + AT_rich Low_complexity Low_complexity 1 22 0 3 1544 636 50 0 0 chr6 125730945 125731025 -23786012 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1544 708 281 12 24 chr6 125731027 125731191 -23785846 - B3A SINE B2 -36 162 1 3 1544 1164 275 144 43 chr6 125731237 125731262 -23785775 - Lx8 LINE L1 -6 7467 7440 3 1544 1682 171 107 28 chr6 125731262 125731618 -23785419 - ORR1C2 LTR MaLR 0 384 1 3 1544 1164 275 144 43 chr6 125731618 125732079 -23784958 - Lx8 LINE L1 -34 7439 6932 3 1544 219 393 0 0 chr6 125732079 125732168 -23784869 - L4 LINE RTE -427 1602 1514 3 1544 660 309 90 14 chr6 125732215 125732504 -23784533 - Charlie19a DNA Charlie -52 334 24 3 1544 885 68 0 0 chr6 125732674 125732791 -23784246 + (GGGAGA)n Simple_repeat Simple_repeat 5 121 0 3 1544 948 297 108 15 chr6 125732833 125733175 -23783862 - MLT2B4 LTR ERVL -182 374 1 3 1544 269 291 122 40 chr6 125733240 125733496 -23783541 + MLT1E2 LTR MaLR 24 302 -165 3 1544 545 259 56 33 chr6 125733607 125733787 -23783250 - MIRb SINE MIR -59 209 26 3 1544 324 0 0 0 chr6 125733804 125733840 -23783197 + (CCAA)n Simple_repeat Simple_repeat 2 37 0 3 1544 228 214 0 0 chr6 125734285 125734341 -23782696 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 3 1544 235 152 33 17 chr6 125734368 125734428 -23782609 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 3 1544 687 66 19 9 chr6 125735479 125735586 -23781451 + (TTCTC)n Simple_repeat Simple_repeat 5 112 0 3 1544 414 0 0 0 chr6 125735587 125735633 -23781404 + (TTCC)n Simple_repeat Simple_repeat 2 47 0 3 1544 552 68 0 0 chr6 125735631 125735704 -23781333 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1544 243 248 0 62 chr6 125736551 125736635 -23780402 + MIR SINE MIR 95 179 -97 3 1544 478 280 293 13 chr6 125737590 125738046 -23778991 - L1MEc LINE L1 -5711 689 106 3 1544 270 0 0 0 chr6 125738139 125738169 -23778868 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1544 183 156 0 0 chr6 125738174 125738206 -23778831 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1544 225 0 0 0 chr6 125738288 125738313 -23778724 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1544 228 274 65 0 chr6 125739188 125739250 -23777787 - MLT1G1 LTR MaLR -404 175 110 3 1544 928 181 128 0 chr6 125739389 125739577 -23777460 + B3 SINE B2 5 216 0 3 1544 669 254 13 27 chr6 125739713 125739863 -23777174 + B4A SINE B4 1 148 -144 3 1544 358 325 69 51 chr6 125741314 125741489 -23775548 - HAL1-3A_ME LINE L1 -397 2461 2284 3 1544 351 0 0 0 chr6 125741489 125741528 -23775509 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 3 1544 1738 263 105 105 chr6 125741528 125742056 -23774981 - Lx8 LINE L1 -50 7423 6919 3 1544 984 113 42 7 chr6 125742056 125742199 -23774838 - B1_Mus1 SINE Alu 0 148 1 3 1544 1738 263 105 105 chr6 125742199 125742545 -23774492 - Lx8 LINE L1 -555 6918 6549 3 1544 309 177 25 25 chr6 125742916 125742998 -23774039 - PB1 SINE Alu 0 127 33 3 1544 246 275 50 0 chr6 125743871 125743951 -23773086 - MIR3 SINE MIR 0 208 125 3 1544 476 167 10 0 chr6 125744203 125744299 -23772738 + CT-rich Low_complexity Low_complexity 3 99 0 3 1544 333 0 0 0 chr6 125744721 125744758 -23772279 + (CAT)n Simple_repeat Simple_repeat 1 37 0 3 1544 1269 251 180 3 chr6 125746626 125746982 -23770055 - MTD LTR MaLR 0 419 1 3 1544 290 210 0 0 chr6 125747127 125747189 -23769848 + MTD LTR MaLR 251 312 -107 3 1544 332 281 124 0 chr6 125747957 125748078 -23768959 + MIRc SINE MIR 106 241 -27 4 1544 299 312 48 100 chr6 125748265 125748475 -23768562 - L2c LINE L2 -7 3380 3182 4 1544 202 340 48 29 chr6 125748584 125748687 -23768350 - MIR SINE MIR -88 120 16 4 1544 556 302 64 45 chr6 125749408 125749675 -23767362 - L4 LINE RTE -3 2026 1755 4 1544 474 18 0 0 chr6 125749888 125749943 -23767094 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1544 333 0 0 0 chr6 125749943 125749979 -23767058 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 1544 235 286 0 10 chr6 125749992 125750017 -23767020 + polypurine Low_complexity Low_complexity 1 25 0 4 1544 207 100 0 0 chr6 125750017 125750047 -23766990 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1544 235 286 0 10 chr6 125750047 125750130 -23766907 + GA-rich Low_complexity Low_complexity 1 82 0 4 1544 213 39 0 0 chr6 125750130 125750156 -23766881 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 1544 288 114 0 5 chr6 125750156 125750219 -23766818 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1544 414 0 0 0 chr6 125750219 125750264 -23766773 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1544 548 317 49 22 chr6 125750843 125751069 -23765968 - L2a LINE L2 -1 3425 3194 4 1544 280 283 77 35 chr6 125751566 125751709 -23765328 + MIR3 SINE MIR 60 208 0 4 1544 183 268 64 85 chr6 125751729 125751823 -23765214 - MIR SINE MIR -68 140 49 4 1544 501 307 12 85 chr6 125752416 125752529 -23764508 - B3A SINE B2 -46 152 38 4 1544 3039 70 0 0 chr6 125752529 125752917 -23764120 + L1Md_A LINE L1 6195 6582 0 4 1544 501 307 12 85 chr6 125752917 125752967 -23764070 - B3A SINE B2 -161 37 2 4 1544 1221 106 0 0 chr6 125754343 125754523 -23762514 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1544 189 0 0 0 chr6 125754661 125754682 -23762355 + (TTG)n Simple_repeat Simple_repeat 1 21 0 4 1544 453 81 0 0 chr6 125755169 125755231 -23761806 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1544 284 329 109 96 chr6 125755888 125756127 -23760910 - Charlie1 DNA MER1_type -2539 242 1 4 1544 200 163 0 23 chr6 125756737 125756781 -23760256 + CT-rich Low_complexity Low_complexity 3 45 0 4 1544 292 292 67 11 chr6 125756791 125756881 -23760156 - B1F1 SINE Alu -51 98 4 4 1544 2026 56 119 0 chr6 125758139 125758408 -23758629 + L1_Mus1 LINE L1 6266 6566 -1 4 1544 23 33 0 0 chr6 125758408 125758438 -23758599 + AT_rich Low_complexity Low_complexity 1 30 0 4 1544 452 281 50 0 chr6 125760182 125760321 -23756716 - RCHARR1 DNA MER1_type -21 953 808 4 1544 2856 240 83 15 chr6 125760574 125761330 -23755707 - RCHARR1 DNA MER1_type -166 808 1 4 1544 658 307 294 20 chr6 125764137 125764978 -23752059 + L2a LINE L2 1978 3048 -371 4 1544 542 316 169 4 chr6 125764994 125765273 -23751764 + L2a LINE L2 3101 3425 -1 4 1544 282 29 0 0 chr6 125765617 125765652 -23751385 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1544 870 83 0 0 chr6 125766657 125766777 -23750260 + (TAG)n Simple_repeat Simple_repeat 2 121 0 4 1544 405 0 0 0 chr6 125766781 125766826 -23750211 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1544 307 282 13 0 chr6 125767818 125767896 -23749141 + CT-rich Low_complexity Low_complexity 2 80 0 4 1544 660 199 8 8 chr6 125767897 125768024 -23749013 - B1_Mus2 SINE Alu -19 128 2 4 1544 597 83 0 0 chr6 125769054 125769138 -23747899 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 1544 434 331 20 33 chr6 125769711 125769864 -23747173 + RSINE1 SINE B4 2 152 -13 4 1544 1056 120 0 0 chr6 125769875 125770085 -23746952 + (CCA)n Simple_repeat Simple_repeat 1 210 0 4 1544 282 29 0 0 chr6 125770087 125770122 -23746915 + (TCC)n Simple_repeat Simple_repeat 2 36 0 4 1544 191 229 0 136 chr6 125770550 125770631 -23746406 - L2c LINE L2 -219 3168 3099 4 1544 293 268 22 44 chr6 125771887 125771977 -23745060 - MTEa LTR MaLR -14 365 278 4 1544 324 296 80 0 chr6 125772220 125772308 -23744729 - MTE-int LTR MaLR -46 1534 1440 4 1544 254 306 30 20 chr6 125772547 125772647 -23744390 + MTEb LTR MaLR 278 378 -1 4 1544 312 27 0 0 chr6 125773166 125773203 -23743834 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1544 195 200 0 0 chr6 125776660 125776700 -23740337 - L2a LINE L2 -17 3409 3370 4 1544 269 226 19 0 chr6 125777115 125777168 -23739869 - MLT1H2 LTR MaLR -351 138 85 4 1544 280 284 66 49 chr6 125777509 125777631 -23739406 - MIRb SINE MIR -95 173 50 4 1544 3530 18 5 0 chr6 125778184 125778578 -23738459 + MTA_Mm LTR MaLR 1 396 0 4 1544 9805 16 0 0 chr6 125778578 125779676 -23737361 + MTA_Mm-int LTR MaLR 1 1098 0 4 1544 3544 15 5 0 chr6 125779676 125780070 -23736967 + MTA_Mm LTR MaLR 1 396 0 4 1544 280 381 0 28 chr6 125780489 125780597 -23736440 + PB1D10 SINE Alu 3 107 -10 4 1544 203 0 37 0 chr6 125781326 125781353 -23735684 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1544 4117 86 5 13 chr6 125781609 125782210 -23734827 + MT2B LTR ERVL 1 596 -5 4 1544 4026 65 0 26 chr6 125784220 125784755 -23732282 - L1Md_F2 LINE L1 -11 6571 6051 4 1544 360 0 0 0 chr6 125785638 125785678 -23731359 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1544 331 329 55 64 chr6 125785752 125786128 -23730909 + L1MEc LINE L1 2259 2629 -3690 4 1544 869 291 7 33 chr6 125786128 125786427 -23730610 - B4A SINE B4 0 292 2 4 1544 283 285 34 20 chr6 125786427 125786535 -23730502 + L1MEc LINE L1 2622 2723 -3596 4 1544 1107 97 0 0 chr6 125786535 125786711 -23730326 + (TCC)n Simple_repeat Simple_repeat 3 178 0 4 1544 297 340 46 56 chr6 125786711 125787009 -23730028 + L1MEc LINE L1 2724 3005 -3314 4 1544 198 0 0 0 chr6 125787112 125787134 -23729903 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 4 1544 657 267 25 1 chr6 125787287 125787461 -23729576 + Lx7 LINE L1 5538 5748 -1948 4 1544 267 350 92 19 chr6 125787461 125787668 -23729369 - LTR82A LTR ERVL -286 586 365 4 1544 344 241 13 0 chr6 125787804 125787883 -23729154 - ID4 SINE ID -2 81 2 4 1544 180 217 0 61 chr6 125787946 125787995 -23729042 - MIRc SINE MIR -198 70 25 4 1544 211 158 26 0 chr6 125788576 125788614 -23728423 + T-rich Low_complexity Low_complexity 1 39 0 4 1544 4455 10 0 0 chr6 125788900 125789389 -23727648 - L1Md_A LINE L1 0 6582 6094 4 1544 519 345 97 42 chr6 125789393 125789917 -23727120 - L1MC4 LINE L1 -126 7756 7204 4 1544 822 198 115 6 chr6 125790102 125790285 -23726752 - B3 SINE B2 0 216 14 4 1544 281 255 64 36 chr6 125790805 125790915 -23726122 - MER104 DNA Tc2 -68 113 1 4 1544 214 214 0 0 chr6 125791416 125791458 -23725579 - L3b LINE CR1 -261 221 180 4 1544 21 71 0 0 chr6 125791763 125791805 -23725232 + AT_rich Low_complexity Low_complexity 1 42 0 4 1544 855 294 91 12 chr6 125792338 125792668 -23724369 - Lx8 LINE L1 -116 7357 7002 4 1544 1253 247 78 27 chr6 125792680 125793050 -23723987 - Lx8 LINE L1 -510 6963 6575 4 1544 4307 151 138 16 chr6 125793338 125794038 -23722999 + RLTR25B LTR ERVK 6 785 -243 4 1544 3541 23 2 0 chr6 125794038 125794433 -23722604 - MTA_Mm LTR MaLR 0 396 1 4 1544 9319 32 2 4 chr6 125794433 125795533 -23721504 - MTA_Mm-int LTR MaLR 0 1098 1 4 1544 2972 49 0 0 chr6 125795533 125795879 -23721158 - MTA_Mm LTR MaLR 0 346 1 4 1544 4307 151 138 16 chr6 125795879 125796088 -23720949 + RLTR25B LTR ERVK 786 1026 -2 4 1544 725 188 68 0 chr6 125797506 125797639 -23719398 - B1_Mur1 SINE Alu -7 142 1 4 1544 7362 28 8 0 chr6 125799027 125799882 -23717155 + L1Md_F2 LINE L1 5721 6582 0 4 1544 248 0 31 0 chr6 125800249 125800281 -23716756 + (TTA)n Simple_repeat Simple_repeat 3 35 0 4 1544 361 248 72 32 chr6 125800914 125801164 -23715873 - Charlie21a DNA MER1_type -169 1044 785 4 1544 2298 244 27 47 chr6 125801350 125801949 -23715088 - Lx8 LINE L1 -153 7320 6734 4 1544 1103 279 75 24 chr6 125801936 125802267 -23714770 + Lx8 LINE L1 6361 6708 -765 4 1544 460 284 50 40 chr6 125802798 125803000 -23714037 - Charlie21a DNA MER1_type -739 474 271 4 1544 451 305 74 11 chr6 125803034 125803210 -23713827 - Charlie21a DNA MER1_type -1022 191 5 4 1544 221 365 89 13 chr6 125803729 125803887 -23713150 - L2b LINE L2 -276 3099 2930 4 1544 530 289 40 8 chr6 125804013 125804249 -23712788 + L1_Rod LINE L1 5441 5763 -477 4 1544 443 280 113 66 chr6 125804469 125804771 -23712266 - ORR1E LTR MaLR -22 337 22 4 1544 530 290 62 16 chr6 125805426 125805668 -23711369 - L1M5 LINE L1 -745 5401 5149 4 1544 998 306 78 16 chr6 125806023 125806534 -23710503 - L1MEf LINE L1 -3055 3886 3344 4 1544 504 286 79 125 chr6 125806545 125806785 -23710252 + Tigger5 DNA MER2_type 1 229 -2177 4 1544 395 274 141 37 chr6 125806932 125807377 -23709660 - L1MEf LINE L1 -3635 3306 2793 4 1544 2557 78 99 5 chr6 125807377 125807749 -23709288 + MTB_Mm LTR MaLR 1 407 0 4 1544 256 246 107 79 chr6 125807749 125807972 -23709065 - L1MEf LINE L1 -4230 2792 2555 4 1544 285 338 0 48 chr6 125808030 125808195 -23708842 - MER106A DNA MER1_type -79 157 1 4 1544 810 309 58 26 chr6 125808224 125808716 -23708321 - L1MEf LINE L1 -4522 2515 1944 4 1544 220 83 20 20 chr6 125808716 125808765 -23708272 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 4 1544 576 261 39 0 chr6 125808969 125809099 -23707938 - RSINE1 SINE B4 -30 135 1 4 1544 355 336 106 14 chr6 125809182 125809457 -23707580 - L1MEf LINE L1 -4955 1468 1169 4 1544 313 306 111 31 chr6 125809533 125809695 -23707342 - MTD LTR MaLR -21 398 224 4 1544 244 248 89 27 chr6 125810949 125811061 -23705976 + L1M3c LINE L1 1326 1444 -4697 4 1544 596 184 36 30 chr6 125811119 125811287 -23705750 - L1M2 LINE L1 -1583 4560 4392 4 1544 256 207 278 28 chr6 125811288 125811432 -23705605 + L1M3c LINE L1 5042 5221 -986 4 1544 1093 297 147 26 chr6 125811727 125812026 -23705011 + L1MB1 LINE L1 5299 5642 -526 4 1544 668 12 12 0 chr6 125812026 125812107 -23704930 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 4 1544 1093 297 147 26 chr6 125812107 125812489 -23704548 + L1MB1 LINE L1 5643 6061 -107 4 1544 934 134 23 6 chr6 125812516 125812688 -23704349 + URR1A DNA MER1_type 52 226 0 4 1544 452 225 24 48 chr6 125814175 125814301 -23702736 + B1F SINE Alu 26 148 -1 4 1544 976 259 156 21 chr6 125815008 125815336 -23701701 - MTEa LTR MaLR 0 379 8 4 1544 212 260 64 13 chr6 125815628 125815706 -23701331 - ID4 SINE ID 0 83 2 4 1544 348 127 59 29 chr6 125817778 125817948 -23699089 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 1544 432 149 56 7 chr6 125818015 125818157 -23698880 + (CA)n Simple_repeat Simple_repeat 1 149 0 4 1544 416 222 9 0 chr6 125818490 125818598 -23698439 + GA-rich Low_complexity Low_complexity 3 111 0 4 1544 2669 170 11 4 chr6 125820879 125821339 -23695698 + Lx2A1 LINE L1 6546 7008 0 4 1544 873 252 5 18 chr6 125823945 125824163 -23692874 + B3 SINE B2 2 216 0 4 1544 200 263 0 17 chr6 125824524 125824582 -23692455 + G-rich Low_complexity Low_complexity 5 61 0 4 1544 1192 249 128 7 chr6 125825304 125825657 -23691380 + Lx3C LINE L1 6596 6999 -1 4 1544 180 0 0 0 chr6 125826309 125826329 -23690708 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1544 666 35 0 0 chr6 125826928 125827013 -23690024 + (CATTC)n Simple_repeat Simple_repeat 4 88 0 5 1544 1257 83 0 0 chr6 125827015 125827195 -23689842 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 5 1544 458 129 12 0 chr6 125827197 125827282 -23689755 + (CATTC)n Simple_repeat Simple_repeat 3 88 0 5 1544 895 96 35 18 chr6 125827281 125827349 -23689688 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 5 1544 1043 96 0 33 chr6 125827349 125827533 -23689504 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 5 1544 895 96 35 18 chr6 125827533 125827634 -23689403 + (TTCC)n Simple_repeat Simple_repeat 3 106 0 5 1544 224 255 0 0 chr6 125827635 125827647 -23689390 + polypyrimidine Low_complexity Low_complexity 37 48 0 5 1544 1209 73 11 6 chr6 125827647 125827826 -23689211 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1544 224 255 0 0 chr6 125827826 125827860 -23689177 + polypyrimidine Low_complexity Low_complexity 3 36 0 5 1544 234 0 0 0 chr6 125828302 125828328 -23688709 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 5 1544 267 93 0 0 chr6 125828348 125828391 -23688646 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1545 342 0 0 0 chr6 125831057 125831095 -23685942 + (CACTA)n Simple_repeat Simple_repeat 1 38 0 5 1545 339 65 0 0 chr6 125831528 125831574 -23685463 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1545 799 211 23 6 chr6 125832150 125832322 -23684715 - B3A SINE B2 -23 175 1 5 1545 347 277 128 23 chr6 125833212 125833234 -23683803 + B1F2 SINE Alu 3 102 -47 5 1545 403 270 0 29 chr6 125833234 125833337 -23683700 + ID_B1 SINE B4 117 216 -8 5 1545 253 325 78 9 chr6 125833359 125833474 -23683563 - L1MB8 LINE L1 -42 6142 6020 5 1545 319 260 41 0 chr6 125833474 125833547 -23683490 + ID4_ SINE ID 4 79 -4 5 1545 1080 281 102 32 chr6 125833650 125834331 -23682706 - L1MB8 LINE L1 -219 5959 5199 5 1545 491 248 144 35 chr6 125834370 125834432 -23682605 - L1MB8 LINE L1 -1008 5138 5078 5 1545 558 181 9 37 chr6 125834432 125834541 -23682496 + U6 snRNA snRNA 1 106 -1 5 1545 491 248 144 35 chr6 125834541 125834791 -23682246 - L1MB8 LINE L1 -1069 5077 4792 5 1545 354 267 50 0 chr6 125834784 125834885 -23682152 - L1MD LINE L1 -2021 4125 4020 5 1545 521 280 41 10 chr6 125835357 125835552 -23681485 - LTR33A LTR ERVL -64 456 256 5 1545 489 309 137 18 chr6 125837823 125838286 -23678751 - Lx8 LINE L1 -2 7471 6970 5 1545 1535 278 46 20 chr6 125838400 125838538 -23678499 - Lx8 LINE L1 -765 6708 6571 5 1545 1650 154 40 114 chr6 125838538 125838890 -23678147 - ORR1A3 LTR MaLR 0 326 1 5 1545 1535 278 46 20 chr6 125838890 125839251 -23677786 - Lx8 LINE L1 -903 6570 6196 5 1545 5132 275 97 17 chr6 125839439 125841807 -23675230 - Lx8 LINE L1 -1673 5971 3415 5 1545 559 226 107 30 chr6 125841881 125842117 -23674920 - Lx8 LINE L1 -4001 1846 1596 5 1545 359 314 121 31 chr6 125842146 125842559 -23674478 - Lx8 LINE L1 -4435 1412 963 5 1545 198 0 0 0 chr6 125842812 125842834 -23674203 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1545 1026 216 112 4 chr6 125843703 125843972 -23673065 + MER119 DNA MER1_type 280 577 -6 5 1545 798 278 62 58 chr6 125845670 125845995 -23671042 - MLT1A0 LTR MaLR -17 348 23 5 1545 296 293 0 0 chr6 125845999 125846081 -23670956 + GA-rich Low_complexity Low_complexity 1 82 0 5 1545 593 297 0 7 chr6 125846443 125846592 -23670445 - Lx8 LINE L1 -158 7315 7168 5 1545 1525 278 37 3 chr6 125846626 125847005 -23670032 - Lx8 LINE L1 -783 6690 6299 5 1545 537 58 0 0 chr6 125847158 125847227 -23669810 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 5 1545 2362 229 116 59 chr6 125847227 125848112 -23668925 - MTD-int LTR MaLR -304 954 19 5 1545 1369 273 50 10 chr6 125848123 125848522 -23668515 - MTD LTR MaLR 0 419 5 5 1545 275 369 22 37 chr6 125848736 125848871 -23668166 - LTR33A_ LTR ERVL -364 167 35 5 1545 27 0 0 0 chr6 125851206 125851233 -23665804 + AT_rich Low_complexity Low_complexity 1 27 0 5 1545 186 133 0 0 chr6 125852283 125852313 -23664724 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1545 333 0 0 0 chr6 125853349 125853386 -23663651 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 5 1545 25 31 0 0 chr6 125853874 125853906 -23663131 + AT_rich Low_complexity Low_complexity 1 32 0 5 1545 383 107 13 0 chr6 125854486 125854561 -23662476 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 5 1545 1167 83 0 0 chr6 125854561 125854706 -23662331 - B1_Mus2 SINE Alu -1 146 2 5 1545 30 0 0 0 chr6 125855192 125855222 -23661815 + AT_rich Low_complexity Low_complexity 1 30 0 5 1545 234 0 0 0 chr6 125855261 125855287 -23661750 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1545 998 209 48 10 chr6 125855315 125855523 -23661514 - B3 SINE B2 0 216 1 5 1545 346 351 37 61 chr6 125857181 125857427 -23659610 - MLT1J LTR MaLR -267 245 6 5 1545 367 276 134 0 chr6 125858426 125858560 -23658477 - L2 LINE L2 -935 2484 2333 5 1545 197 133 67 0 chr6 125859452 125859497 -23657540 + T-rich Low_complexity Low_complexity 3 50 0 5 1545 243 0 0 0 chr6 125860018 125860045 -23656992 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1545 184 353 92 8 chr6 125860063 125860183 -23656854 + L3 LINE CR1 4204 4333 -156 5 1545 239 256 0 68 chr6 125860919 125861007 -23656030 + RSINE1 SINE B4 11 92 -73 5 1545 405 122 0 0 chr6 125861170 125861244 -23655793 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1545 210 156 0 0 chr6 125861244 125861289 -23655748 + GA-rich Low_complexity Low_complexity 1 45 0 5 1545 216 67 0 0 chr6 125861784 125861814 -23655223 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 5 1545 346 84 0 155 chr6 125861929 125862013 -23655024 - L1Md_A LINE L1 0 6582 6512 5 1545 288 0 0 0 chr6 125862180 125862212 -23654825 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1545 669 224 0 0 chr6 125862212 125862373 -23654664 + (TA)n Simple_repeat Simple_repeat 1 161 0 5 1545 389 282 171 58 chr6 125862871 125863357 -23653680 - L1MD LINE L1 -2114 4032 3492 5 1545 774 163 5 0 chr6 125863362 125863584 -23653453 + (TG)n Simple_repeat Simple_repeat 1 222 0 5 1545 253 280 140 0 chr6 125864140 125864233 -23652804 - ID_B1 SINE B4 -3 221 116 5 1545 217 299 130 29 chr6 125864648 125864855 -23652182 - MIRb SINE MIR -39 229 2 5 1545 794 157 0 13 chr6 125864930 125865085 -23651952 + GA-rich Low_complexity Low_complexity 1 153 0 5 1545 266 258 112 0 chr6 125865085 125865174 -23651863 + B1_Mur4 SINE Alu 42 140 -10 5 1545 824 278 32 49 chr6 125865214 125865498 -23651539 + RLTR18B LTR ERVK 141 419 -93 5 1545 254 269 9 53 chr6 125866015 125866129 -23650908 + L2 LINE L2 2756 2864 -555 5 1545 1858 218 39 22 chr6 125866291 125866703 -23650334 + MTD LTR MaLR 1 419 0 5 1545 180 0 0 0 chr6 125866843 125866863 -23650174 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1545 588 206 19 0 chr6 125869067 125869174 -23647863 - B1F2 SINE Alu -7 142 34 5 1545 626 147 0 8 chr6 125869336 125869453 -23647584 - Lx9 LINE L1 -2 7642 7527 5 1545 637 270 55 0 chr6 125869737 125869937 -23647100 + B3 SINE B2 1 211 -5 5 1545 269 313 45 22 chr6 125870165 125870299 -23646738 + MIRc SINE MIR 79 215 -53 5 1545 871 260 52 142 chr6 125871342 125871644 -23645393 - MTEa LTR MaLR -8 371 82 5 1545 345 24 0 0 chr6 125871644 125871686 -23645351 + (CAAAC)n Simple_repeat Simple_repeat 3 44 0 5 1545 871 260 52 142 chr6 125871686 125871791 -23645246 - MTEa LTR MaLR -298 81 1 5 1545 378 299 32 46 chr6 125874346 125874562 -23642475 + L1_Mm LINE L1 5314 5567 -733 5 1545 200 272 84 42 chr6 125874775 125874894 -23642143 - L3 LINE CR1 -830 3659 3536 5 1545 631 311 58 58 chr6 125876579 125876907 -23640130 + ORR1E LTR MaLR 26 353 -6 5 1545 240 218 162 38 chr6 125877767 125877872 -23639165 + Lx7 LINE L1 7578 7695 -1 5 1545 443 285 59 53 chr6 125878223 125878298 -23638739 + B4 SINE B4 140 222 -70 5 1545 243 0 45 45 chr6 125878298 125878342 -23638695 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 5 1545 443 285 59 53 chr6 125878342 125878418 -23638619 + B4 SINE B4 223 291 -1 5 1545 638 259 102 5 chr6 125878687 125878893 -23638144 - MER2 DNA MER2_type -33 312 87 5 1545 600 320 7 0 chr6 125878923 125879070 -23637967 + RSINE1 SINE B4 16 163 -2 5 1545 280 165 70 44 chr6 125879337 125879451 -23637586 - Lx9 LINE L1 -11 7633 7517 5 1545 511 178 15 0 chr6 125879471 125879606 -23637431 + (CA)n Simple_repeat Simple_repeat 2 138 0 5 1545 2900 285 62 30 chr6 125879642 125880576 -23636461 + Lx9 LINE L1 6400 7363 -281 5 1545 379 244 16 94 chr6 125881403 125881530 -23635507 + B1F SINE Alu 32 148 -1 5 1545 386 235 25 34 chr6 125882167 125882286 -23634751 + MamRep434 DNA TcMar 64 181 -245 5 1545 253 217 21 112 chr6 125882473 125882584 -23634453 + B1_Mur4 SINE Alu 11 112 -38 5 1545 286 277 10 21 chr6 125882590 125882618 -23634419 + polypurine Low_complexity Low_complexity 3 30 0 5 1545 281 299 26 0 chr6 125882618 125882695 -23634342 + ID4_ SINE ID 2 80 -3 5 1545 304 284 5 11 chr6 125882695 125882762 -23634275 + polypurine Low_complexity Low_complexity 1 66 0 5 1545 224 324 14 14 chr6 125885658 125885727 -23631310 - L2c LINE L2 -36 3351 3283 5 1545 490 238 19 1 chr6 125886018 125886129 -23630908 + B3A SINE B2 3 113 -103 5 1545 1332 246 62 24 chr6 125886385 125886755 -23630282 + MTD LTR MaLR 35 418 -1 5 1545 893 79 8 0 chr6 125887243 125887370 -23629667 + (TTCCC)n Simple_repeat Simple_repeat 1 128 0 5 1545 681 13 0 0 chr6 125888607 125888685 -23628352 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1545 190 337 11 34 chr6 125888829 125888918 -23628119 + MIRb SINE MIR 98 184 -84 5 1545 1078 107 18 14 chr6 125888992 125889284 -23627753 + (TGGA)n Simple_repeat Simple_repeat 1 293 0 5 1545 217 150 0 24 chr6 125891202 125891243 -23625794 + GA-rich Low_complexity Low_complexity 2 41 0 5 1545 555 259 35 29 chr6 125891886 125892057 -23624980 - MTEa LTR MaLR -2 377 206 5 1545 247 203 108 15 chr6 125892089 125892154 -23624883 - MTEa LTR MaLR -303 71 1 5 1545 2290 296 66 24 chr6 125892154 125892987 -23624050 - ORR1E-int LTR MaLR -53 1527 659 5 1545 255 234 141 0 chr6 125892984 125893048 -23623989 - ORR1E-int LTR MaLR -1507 73 1 5 1545 419 303 115 87 chr6 125893052 125893399 -23623638 - ORR1E LTR MaLR -2 357 1 5 1545 201 24 98 0 chr6 125894469 125894510 -23622527 + (GTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1545 1159 83 0 0 chr6 125895267 125895412 -23621625 + B1_Mus2 SINE Alu 3 147 0 5 1545 202 352 48 54 chr6 125895853 125896039 -23620998 - MIRb SINE MIR -31 237 53 5 1545 634 24 0 23 chr6 125896714 125896800 -23620237 + (TATATG)n Simple_repeat Simple_repeat 2 85 0 5 1545 279 0 0 0 chr6 125897514 125897545 -23619492 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1545 652 226 24 0 chr6 125897545 125897669 -23619368 - B3A SINE B2 -64 134 8 6 1545 604 250 44 0 chr6 125897707 125897887 -23619150 - L1MA6 LINE L1 -360 5940 5753 6 1545 330 295 34 109 chr6 125898342 125898517 -23618520 + MER5A DNA MER1_type 2 163 -26 6 1545 652 305 51 34 chr6 125898608 125898842 -23618195 + B4A SINE B4 26 263 -29 6 1545 203 298 0 0 chr6 125898886 125898943 -23618094 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1545 353 62 0 0 chr6 125898943 125898991 -23618046 + HAL1-3A_ME LINE L1 1976 2023 -835 6 1545 516 240 88 0 chr6 125899485 125899610 -23617427 - ID_B1 SINE B4 -6 218 83 6 1545 1637 169 112 21 chr6 125900280 125900619 -23616418 + MTD LTR MaLR 50 419 0 6 1545 867 295 161 10 chr6 125901545 125902062 -23614975 + L1MC3 LINE L1 7163 7757 -28 6 1545 605 336 67 41 chr6 125902101 125902709 -23614328 + L1ME1 LINE L1 5521 6144 -35 6 1545 273 254 18 124 chr6 125903033 125903175 -23613862 - MIRc SINE MIR -5 257 126 6 1545 681 282 19 107 chr6 125903312 125903574 -23613463 + B4 SINE B4 3 241 -51 6 1545 288 0 0 0 chr6 125903590 125903622 -23613415 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1545 462 277 9 18 chr6 125903819 125903933 -23613104 + PB1D10 SINE Alu 2 114 -3 6 1545 362 247 6 0 chr6 125905454 125905546 -23611491 - PB1D10 SINE Alu -16 104 10 6 1545 186 71 0 0 chr6 125906052 125906080 -23610957 + (TGG)n Simple_repeat Simple_repeat 3 30 0 6 1545 344 308 28 28 chr6 125906624 125906731 -23610306 + B1F2 SINE Alu 2 108 -41 6 1545 454 208 0 0 chr6 125907095 125907172 -23609865 + PB1D10 SINE Alu 9 85 -32 6 1545 1196 55 7 0 chr6 125907204 125907349 -23609688 + B1_Mm SINE Alu 2 147 0 6 1545 228 100 0 0 chr6 125907349 125907389 -23609648 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 6 1545 358 268 42 62 chr6 125907736 125907978 -23609059 + L1ME3B LINE L1 5265 5507 -733 6 1545 4089 19 0 0 chr6 125907956 125908420 -23608617 + L1Md_T LINE L1 5123 5586 -297 6 1545 9130 6 0 1 chr6 125908420 125909417 -23607620 + L1Md_T LINE L1 5587 6582 0 6 1545 679 316 49 29 chr6 125909421 125909767 -23607270 + L1ME3B LINE L1 5477 5829 -411 6 1545 642 26 0 0 chr6 125909965 125910041 -23606996 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1545 234 333 73 52 chr6 125910349 125910485 -23606552 - L2 LINE L2 -569 2850 2712 6 1545 408 40 0 0 chr6 125911668 125911718 -23605319 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1545 735 33 0 0 chr6 125912042 125912132 -23604905 + (CA)n Simple_repeat Simple_repeat 2 91 0 6 1545 218 296 14 0 chr6 125912374 125912445 -23604592 + C-rich Low_complexity Low_complexity 3 74 0 6 1545 354 217 0 0 chr6 125916234 125916303 -23600734 + tRNA-Ala-GCY_ tRNA tRNA 2 70 -5 6 1545 378 0 0 0 chr6 125916436 125916478 -23600559 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1545 207 164 71 18 chr6 125917702 125917758 -23599279 + (CTAAA)n Simple_repeat Simple_repeat 2 60 0 6 1545 453 325 17 57 chr6 125918003 125918179 -23598858 + MTEa LTR MaLR 12 180 -199 6 1545 570 350 76 21 chr6 125918725 125919107 -23597930 - LTR86B1 LTR ERVL -63 430 28 6 1545 546 203 98 0 chr6 125920271 125920404 -23596633 - B1F1 SINE Alu 0 149 4 6 1545 721 300 28 24 chr6 125920415 125920668 -23596369 - RMER15 LTR ERVL -14 561 308 6 1545 192 217 0 0 chr6 125920744 125920790 -23596247 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 6 1545 292 342 18 0 chr6 125921058 125921172 -23595865 - Tigger5 DNA MER2_type 0 2406 2291 6 1545 493 266 52 25 chr6 125922275 125922468 -23594569 - ORR1E LTR MaLR -180 194 1 6 1545 744 287 51 96 chr6 125922562 125922732 -23594305 + B4A SINE B4 5 154 -138 6 1545 1417 234 45 45 chr6 125922732 125923113 -23593924 - ORR1C2 LTR MaLR -3 381 1 6 1545 744 287 51 96 chr6 125923113 125923235 -23593802 + B4A SINE B4 155 284 -8 6 1545 279 0 0 0 chr6 125923265 125923296 -23593741 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1545 492 237 8 48 chr6 125923313 125923437 -23593600 + B3A SINE B2 1 119 -79 6 1545 288 0 0 0 chr6 125923607 125923639 -23593398 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1545 235 193 0 66 chr6 125924083 125924144 -23592893 + B4A SINE B4 90 146 -146 6 1545 359 217 35 19 chr6 125924092 125924189 -23592848 + PB1D10 SINE Alu 11 118 -2 6 1545 22 0 0 0 chr6 125926176 125926198 -23590839 + AT_rich Low_complexity Low_complexity 1 22 0 6 1545 441 0 0 0 chr6 125926491 125926540 -23590497 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1545 273 320 10 20 chr6 125926581 125926683 -23590354 + CT-rich Low_complexity Low_complexity 1 101 0 6 1545 414 98 43 21 chr6 125926848 125926942 -23590095 + (TCTCTG)n Simple_repeat Simple_repeat 6 101 0 6 1545 681 309 66 18 chr6 125926970 125927197 -23589840 - B4A SINE B4 0 292 55 6 1545 2784 98 0 0 chr6 125927325 125927693 -23589344 - Lx2 LINE L1 -156 6841 6474 6 1545 1212 158 63 13 chr6 125928095 125928333 -23588704 - MTC LTR MaLR -8 413 164 6 1545 255 191 222 0 chr6 125928312 125928375 -23588662 - MTB_Mm LTR MaLR -162 245 169 6 1545 437 188 10 20 chr6 125928375 125928473 -23588564 - MTC LTR MaLR -161 260 164 6 1545 380 219 10 20 chr6 125928452 125928550 -23588487 - MTC LTR MaLR -161 260 164 6 1545 1323 216 4 0 chr6 125928529 125928788 -23588249 - MTC LTR MaLR -161 260 1 6 1545 301 291 46 162 chr6 125928788 125929146 -23587891 + MLT1A0 LTR MaLR 45 404 -4 6 1545 533 282 47 52 chr6 125929835 125930007 -23587030 + B3A SINE B2 2 172 -26 6 1545 204 40 0 0 chr6 125930019 125930044 -23586993 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1545 351 286 90 58 chr6 125930532 125930721 -23586316 - MER21B LTR ERV1 -158 705 511 6 1545 231 331 39 61 chr6 125930663 125930843 -23586194 - MER77 LTR ERVL -4 603 428 6 1545 436 315 35 7 chr6 125931203 125931347 -23585690 - B1_Mur2 SINE Alu -1 148 1 6 1545 405 0 0 0 chr6 125931396 125931441 -23585596 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1545 227 260 0 20 chr6 125931937 125931988 -23585049 + polypurine Low_complexity Low_complexity 1 50 0 6 1545 333 0 0 0 chr6 125932425 125932462 -23584575 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1545 935 93 25 6 chr6 125933626 125933788 -23583249 + (TATG)n Simple_repeat Simple_repeat 2 166 0 6 1545 796 259 74 4 chr6 125933857 125934086 -23582951 - B4 SINE B4 -5 287 43 6 1545 330 337 77 29 chr6 125934433 125934641 -23582396 - MLT1N2 LTR MaLR -9 553 336 6 1545 768 154 0 0 chr6 125935198 125935321 -23581716 + B2_Mm2 SINE B2 2 124 -71 6 1545 471 35 0 0 chr6 125935389 125935446 -23581591 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 6 1545 1473 184 4 32 chr6 125935451 125935731 -23581306 + MTC LTR MaLR 150 421 0 6 1545 211 246 175 0 chr6 125936717 125936774 -23580263 - ID4_ SINE ID -7 76 10 6 1545 1200 139 5 5 chr6 125937633 125937828 -23579209 - B2_Mm2 SINE B2 0 195 1 6 1545 458 68 27 0 chr6 125939519 125939593 -23577444 + (CAGAGA)n Simple_repeat Simple_repeat 2 77 0 6 1545 220 200 29 0 chr6 125939785 125939855 -23577182 + CT-rich Low_complexity Low_complexity 1 72 0 6 1545 284 301 54 0 chr6 125939856 125939949 -23577088 - PB1D7 SINE Alu -5 115 18 6 1545 588 95 0 0 chr6 125940137 125940221 -23576816 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 6 1545 1227 54 0 0 chr6 125940233 125940380 -23576657 - B1_Mm SINE Alu 0 147 1 6 1545 314 269 0 0 chr6 125941580 125941647 -23575390 + Lx8 LINE L1 7047 7113 -360 6 1545 605 286 62 86 chr6 125941647 125942039 -23574998 + RLTR11B LTR ERVK 1 386 -142 6 1545 275 149 215 63 chr6 125942151 125942230 -23574807 - Lx7 LINE L1 -1096 6600 6510 6 1545 486 0 0 0 chr6 125942296 125942350 -23574687 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1545 913 73 29 0 chr6 125942350 125942487 -23574550 + (TTCC)n Simple_repeat Simple_repeat 3 143 0 6 1545 405 196 340 7 chr6 125942491 125942531 -23574506 - Lx5 LINE L1 0 7050 7008 6 1545 852 55 0 0 chr6 125942531 125942641 -23574396 + (TCTCC)n Simple_repeat Simple_repeat 2 111 0 6 1545 405 196 340 7 chr6 125942641 125942744 -23574293 - Lx5 LINE L1 -43 7007 6861 6 1545 297 0 0 0 chr6 125943023 125943056 -23573981 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1545 187 114 45 0 chr6 125944866 125944910 -23572127 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1545 256 326 94 43 chr6 125945034 125945172 -23571865 + MIR SINE MIR 21 165 -97 6 1545 1986 102 41 77 chr6 125946572 125946911 -23570126 + ORR1A2 LTR MaLR 1 327 0 6 1545 23 0 0 0 chr6 125947194 125947217 -23569820 + AT_rich Low_complexity Low_complexity 1 23 0 6 1545 570 240 62 156 chr6 125947250 125947571 -23569466 - B4A SINE B4 0 292 2 6 1545 200 182 0 0 chr6 125947635 125947668 -23569369 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1545 226 237 192 20 chr6 125950818 125950917 -23566120 - Charlie6 DNA MER1_type -2409 1091 976 6 1545 194 316 0 17 chr6 125951759 125951817 -23565220 + L2c LINE L2 3254 3310 -77 6 1545 251 289 109 40 chr6 125952324 125952425 -23564612 + MIR3 SINE MIR 64 171 -37 6 1545 400 327 47 33 chr6 125954090 125954302 -23562735 + ORR1E LTR MaLR 2 216 -143 6 1545 249 362 79 31 chr6 125954885 125955113 -23561924 + L4 LINE RTE 1785 2023 -6 6 1545 244 93 63 51 chr6 125955312 125955391 -23561646 + (GTGTG)n Simple_repeat Simple_repeat 2 81 0 6 1545 694 94 52 12 chr6 125955406 125955578 -23561459 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1545 257 86 69 0 chr6 125955589 125955647 -23561390 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1545 1197 48 14 0 chr6 125955763 125955908 -23561129 - B1_Mus1 SINE Alu 0 148 2 6 1545 281 296 92 86 chr6 125955909 125956083 -23560954 + MLT2B5 LTR ERVL 84 258 -459 6 1545 465 243 0 28 chr6 125956329 125956435 -23560602 - MLT1A0 LTR MaLR 0 365 263 6 1545 24 32 0 0 chr6 125957599 125957630 -23559407 + AT_rich Low_complexity Low_complexity 1 31 0 6 1545 1892 306 110 4 chr6 125957638 125958393 -23558644 - Lx8 LINE L1 -12 7461 6627 7 1545 426 121 0 0 chr6 125959570 125959636 -23557401 + (TA)n Simple_repeat Simple_repeat 1 66 0 7 1546 621 277 102 40 chr6 125961188 125961463 -23555574 - B4A SINE B4 0 292 1 7 1546 207 229 17 102 chr6 125961473 125961539 -23555498 - MIR SINE MIR -8 260 198 7 1546 182 37 37 0 chr6 125961682 125961709 -23555328 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 7 1546 825 20 0 0 chr6 125962097 125962196 -23554841 + (CA)n Simple_repeat Simple_repeat 1 99 0 7 1546 195 375 0 14 chr6 125962414 125962487 -23554550 + L2b LINE L2 3300 3371 -4 7 1546 353 148 10 154 chr6 125962535 125962639 -23554398 + PB1D10 SINE Alu 22 110 -7 7 1546 379 244 0 65 chr6 125962679 125962771 -23554266 + MER58A DNA MER1_type 2 87 -137 7 1546 645 80 0 0 chr6 125962945 125963033 -23554004 + (GGGA)n Simple_repeat Simple_repeat 3 90 0 7 1546 294 301 40 67 chr6 125967389 125967613 -23549424 - Lx5 LINE L1 -276 6021 5804 7 1546 324 150 0 16 chr6 125967614 125967675 -23549362 - HAL1-3A_ME LINE L1 -821 2037 1978 7 1546 325 118 0 45 chr6 125967684 125967773 -23549264 + (TCTG)n Simple_repeat Simple_repeat 2 86 0 7 1546 216 0 0 0 chr6 125967778 125967802 -23549235 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1546 624 259 38 16 chr6 125967802 125967908 -23549129 - Lx5 LINE L1 -520 5780 5661 7 1546 539 204 107 0 chr6 125967908 125968011 -23549026 + PB1D9 SINE Alu 1 114 -6 7 1546 624 272 4 82 chr6 125968011 125968170 -23548867 - Lx5 LINE L1 -615 5685 5545 7 1546 665 273 81 63 chr6 125968702 125969154 -23547883 - RLTR15 LTR ERVK -28 500 1 7 1546 386 270 77 107 chr6 125969969 125970268 -23546769 + B4 SINE B4 1 290 -2 7 1546 3028 85 2 2 chr6 125970343 125970743 -23546294 - MTB LTR MaLR 0 400 1 7 1546 2214 152 70 30 chr6 125971175 125971574 -23545463 + MTC LTR MaLR 1 415 -6 7 1546 1214 123 11 5 chr6 125971852 125972040 -23544997 - B2_Mm2 SINE B2 -6 189 1 7 1546 288 244 0 13 chr6 125972498 125972577 -23544460 + GA-rich Low_complexity Low_complexity 1 78 0 7 1546 524 263 89 46 chr6 125973738 125974064 -23542973 + ORR1E LTR MaLR 2 372 -7 7 1546 37760 10 11 12 chr6 125974372 125979863 -23537174 + L1Md_A LINE L1 1 4990 -893 7 1546 226 183 46 77 chr6 125979863 125979928 -23537109 - RMER20A LTR ERVK -268 248 186 7 1546 37760 10 11 12 chr6 125979928 125980582 -23536455 + L1Md_A LINE L1 4991 5586 -297 7 1546 9189 2 1 0 chr6 125980582 125981577 -23535460 + L1Md_A LINE L1 5587 6582 0 7 1546 346 275 0 12 chr6 125981832 125981913 -23535124 + ID4_ SINE ID 4 83 0 7 1546 266 257 13 13 chr6 125983026 125983101 -23533936 + MER46C DNA MER2_type 264 338 0 7 1546 312 256 79 79 chr6 125983248 125983388 -23533649 - MTEa LTR MaLR 0 379 240 7 1546 340 335 32 75 chr6 125983891 125984078 -23532959 + MER112 DNA MER1_type 3 181 -80 7 1546 205 302 37 28 chr6 125984737 125984846 -23532191 + CT-rich Low_complexity Low_complexity 6 115 0 7 1546 210 160 58 39 chr6 125984738 125984790 -23532247 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 7 1546 207 258 113 68 chr6 125985347 125985480 -23531557 + MIRb SINE MIR 72 210 -58 7 1546 405 0 0 0 chr6 125985603 125985648 -23531389 + (CTA)n Simple_repeat Simple_repeat 2 46 0 7 1546 844 278 140 34 chr6 125986560 125986824 -23530213 - B4 SINE B4 0 292 1 7 1546 636 332 110 22 chr6 125987072 125987389 -23529648 - MER2 DNA MER2_type 0 345 1 7 1546 253 273 26 13 chr6 125990180 125990258 -23526779 + CT-rich Low_complexity Low_complexity 2 80 0 7 1546 719 245 25 20 chr6 125992950 125993146 -23523891 - B3A SINE B2 0 198 2 7 1546 548 224 70 23 chr6 125993702 125993830 -23523207 - B1_Mur1 SINE Alu -13 136 3 7 1546 198 207 0 0 chr6 125994143 125994201 -23522836 + GA-rich Low_complexity Low_complexity 1 58 0 7 1546 337 271 0 0 chr6 125994371 125994441 -23522596 + B3A SINE B2 1 70 -128 7 1546 387 0 0 0 chr6 125994441 125994484 -23522553 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1546 279 0 0 0 chr6 125994484 125994514 -23522523 + (GA)n Simple_repeat Simple_repeat 2 32 0 7 1546 236 100 0 24 chr6 125994523 125994564 -23522473 + (CATA)n Simple_repeat Simple_repeat 1 40 0 7 1546 26 50 0 0 chr6 125994583 125994623 -23522414 + AT_rich Low_complexity Low_complexity 1 40 0 7 1546 489 297 79 57 chr6 125995090 125995408 -23521629 - L1M6 LINE L1 -4692 1804 1480 7 1546 194 365 24 0 chr6 125995836 125995921 -23521116 + MIR3 SINE MIR 122 208 0 7 1546 378 343 103 80 chr6 125996961 125997224 -23519813 + ORR1E LTR MaLR 44 312 -47 7 1546 194 128 26 0 chr6 125999115 125999154 -23517883 + GA-rich Low_complexity Low_complexity 1 40 0 7 1546 231 114 0 0 chr6 125999172 125999207 -23517830 + (CATA)n Simple_repeat Simple_repeat 2 36 0 7 1546 3780 190 97 16 chr6 126001063 126001855 -23515182 + Lx7 LINE L1 5947 6802 -894 1 1546 1290 179 43 25 chr6 126001857 126002358 -23514679 + RMER17C LTR ERVK 3 410 0 2 1546 2595 226 24 46 chr6 126002358 126002994 -23514043 + Lx7 LINE L1 6799 7420 -276 1 1546 315 0 0 0 chr6 126003157 126003192 -23513845 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1546 766 249 9 70 chr6 126004146 126004375 -23512662 + B3 SINE B2 2 216 0 4 1546 24 0 0 0 chr6 126004377 126004401 -23512636 + AT_rich Low_complexity Low_complexity 1 24 0 5 1546 3352 55 0 0 chr6 126004608 126005008 -23512029 - MTB LTR MaLR 0 400 1 6 1546 428 399 32 59 chr6 126005893 126006114 -23510923 - MER115 DNA Tip100 -357 336 122 7 1546 291 212 21 96 chr6 126006217 126006311 -23510726 + B4A SINE B4 2 88 -204 8 1546 250 235 0 0 chr6 126006340 126006391 -23510646 + B4A SINE B4 180 230 -62 8 1546 208 262 36 0 chr6 126006523 126006607 -23510430 + CT-rich Low_complexity Low_complexity 1 87 0 9 1546 240 259 0 0 chr6 126006687 126006741 -23510296 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1546 189 0 0 0 chr6 126006741 126006762 -23510275 + (CCA)n Simple_repeat Simple_repeat 3 23 0 1 1546 221 326 100 20 chr6 126007558 126007658 -23509379 - MIRb SINE MIR -38 230 123 1 1546 525 321 141 30 chr6 126008004 126008303 -23508734 - MLT2B1 LTR ERVL 0 520 189 1 1546 3770 173 45 22 chr6 126008405 126008533 -23508504 + RMER1B Other Other 364 497 -569 1 1546 8242 27 0 4 chr6 126008533 126009466 -23507571 - RLTR13B3 LTR ERVK 0 929 1 1 1546 3770 173 45 22 chr6 126009466 126009607 -23507430 + RMER1B Other Other 498 634 -432 1 1546 2427 80 3 58 chr6 126009607 126009953 -23507084 + ORR1A2 LTR MaLR 1 327 0 1 1546 3770 173 45 22 chr6 126009953 126010366 -23506671 + RMER1B Other Other 635 1063 -3 1 1546 214 338 172 8 chr6 126010711 126010845 -23506192 + MIR SINE MIR 101 256 -6 1 1546 808 243 70 42 chr6 126011305 126011520 -23505517 - B4A SINE B4 -67 225 5 1 1546 1012 330 118 39 chr6 126011596 126012087 -23504950 - MT2A LTR ERVL -3 530 1 1 1546 2237 143 62 3 chr6 126012633 126013005 -23504032 + ORR1B1 LTR MaLR 1 394 0 2 1546 655 330 42 52 chr6 126013518 126014255 -23502782 + L1M5 LINE L1 2476 3205 -2941 2 1546 1456 136 0 5 chr6 126014444 126014665 -23502372 - URR1A DNA MER1_type -6 220 1 2 1546 443 269 0 0 chr6 126014665 126014757 -23502280 - ORR1E LTR MaLR -267 92 1 2 1546 24 32 0 0 chr6 126015225 126015256 -23501781 + AT_rich Low_complexity Low_complexity 1 31 0 2 1546 1621 232 81 0 chr6 126015460 126015817 -23501220 - MTD LTR MaLR -11 408 23 2 1546 1228 61 0 0 chr6 126016047 126016194 -23500843 + B1_Mus1 SINE Alu 2 148 0 2 1546 1568 241 70 35 chr6 126016578 126016662 -23500375 - MTD LTR MaLR 0 419 336 2 1546 652 138 421 0 chr6 126016662 126016821 -23500216 + URR1A DNA MER1_type 1 226 0 2 1546 1568 241 70 35 chr6 126016821 126017136 -23499901 - MTD LTR MaLR -84 335 6 2 1546 283 272 98 66 chr6 126017480 126017602 -23499435 - MLT1A1 LTR MaLR -12 396 271 2 1546 323 287 90 27 chr6 126017884 126017995 -23499042 - B3 SINE B2 -98 118 1 3 1546 53 17 0 0 chr6 126018158 126018218 -23498819 + AT_rich Low_complexity Low_complexity 1 60 0 3 1546 520 318 117 40 chr6 126018251 126018602 -23498435 + L1M5 LINE L1 4995 5372 -774 3 1546 215 271 110 18 chr6 126018712 126018821 -23498216 - MIRc SINE MIR -52 216 98 3 1546 1211 222 29 109 chr6 126018836 126019185 -23497852 - MTE2b LTR MaLR -5 374 54 3 1546 419 191 318 0 chr6 126019206 126019316 -23497721 - B1_Mur1 SINE Alu -3 146 2 3 1546 901 219 93 100 chr6 126019317 126019627 -23497410 + MTE2a LTR MaLR 3 310 -69 3 1546 543 102 0 0 chr6 126020730 126020818 -23496219 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 1546 384 40 0 123 chr6 126021196 126021367 -23495670 + CT-rich Low_complexity Low_complexity 1 150 0 3 1546 472 332 35 98 chr6 126021717 126022033 -23495004 - MLT1D LTR MaLR -2 503 174 3 1546 468 269 37 0 chr6 126022055 126022163 -23494874 - ID_B1 SINE B4 -13 211 100 4 1546 414 0 0 0 chr6 126022174 126022220 -23494817 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1546 186 309 0 18 chr6 126022382 126022438 -23494599 + MIR3 SINE MIR 111 165 -43 4 1546 234 374 30 65 chr6 126023195 126023395 -23493642 - MIRb SINE MIR -36 232 40 4 1546 354 45 0 0 chr6 126023464 126023508 -23493529 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 4 1546 180 260 107 27 chr6 126024106 126024181 -23492856 + MIRb SINE MIR 117 197 -71 4 1546 591 269 7 7 chr6 126024926 126025061 -23491976 + B3A SINE B2 2 136 -62 4 1546 570 15 0 0 chr6 126025067 126025134 -23491903 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1546 769 201 15 0 chr6 126025220 126025354 -23491683 + B1_Mur3 SINE Alu 3 138 -11 4 1546 297 0 0 0 chr6 126025354 126025387 -23491650 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1546 1804 193 197 7 chr6 126025784 126026037 -23491000 - Lx5 LINE L1 -3 7047 6741 5 1546 468 0 0 0 chr6 126026037 126026089 -23490948 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1546 1804 193 197 7 chr6 126026089 126026252 -23490785 - Lx5 LINE L1 -310 6740 6552 5 1546 352 289 47 47 chr6 126027051 126027178 -23489859 - MIRc SINE MIR -26 242 116 5 1546 578 288 5 45 chr6 126028226 126028294 -23488743 - Lx9 LINE L1 -206 7438 7374 5 1546 2158 143 114 0 chr6 126028294 126028644 -23488393 - ORR1B1 LTR MaLR -4 390 1 5 1546 578 288 5 45 chr6 126028644 126028775 -23488262 - Lx9 LINE L1 -271 7373 7247 5 1546 30 69 0 0 chr6 126028896 126028954 -23488083 + AT_rich Low_complexity Low_complexity 1 58 0 5 1546 498 33 0 0 chr6 126028965 126029025 -23488012 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1546 1345 150 5 27 chr6 126029057 126029276 -23487761 - URR1B DNA MER1_type -11 214 1 5 1546 1114 249 102 33 chr6 126029290 126029622 -23487415 + Lx9 LINE L1 6494 6848 -796 5 1546 256 194 15 0 chr6 126029651 126029723 -23487314 - MIR SINE MIR -149 119 46 5 1546 1012 91 13 0 chr6 126029974 126030128 -23486909 + (TTCC)n Simple_repeat Simple_repeat 1 156 0 6 1546 183 162 0 0 chr6 126030135 126030172 -23486865 + CT-rich Low_complexity Low_complexity 4 40 0 6 1546 310 384 48 0 chr6 126030175 126030321 -23486716 - HAL1-3A_ME LINE L1 -421 2437 2285 6 1546 819 57 0 0 chr6 126030358 126030463 -23486574 + (TTTCC)n Simple_repeat Simple_repeat 1 105 0 6 1546 437 264 152 42 chr6 126030809 126031046 -23485991 + B4A SINE B4 12 274 -18 6 1546 319 283 8 96 chr6 126031176 126031301 -23485736 - PB1D10 SINE Alu -2 115 2 6 1546 1467 271 8 0 chr6 126031454 126031826 -23485211 - MTEa LTR MaLR -4 375 1 6 1546 228 338 127 8 chr6 126032080 126032214 -23484823 - L2a LINE L2 -9 3417 3268 6 1546 2458 137 6 3 chr6 126032374 126032740 -23484297 + ORR1B2 LTR MaLR 1 367 0 6 1546 478 231 213 32 chr6 126032882 126033070 -23483967 + RMER15 LTR ERVL 337 558 -17 6 1546 843 254 69 10 chr6 126033613 126033816 -23483221 + B3 SINE B2 1 215 -1 7 1546 29 28 0 0 chr6 126033954 126033990 -23483047 + AT_rich Low_complexity Low_complexity 1 36 0 7 1546 259 310 52 37 chr6 126034953 126035087 -23481950 - MLT1H LTR MaLR -407 142 7 7 1546 428 234 195 0 chr6 126035874 126036028 -23481009 - B3A SINE B2 -10 188 5 7 1546 215 94 0 0 chr6 126036028 126036060 -23480977 - B3A SINE B2 -166 32 1 7 1546 245 347 24 16 chr6 126037284 126037407 -23479630 + Tigger8 DNA MER2_type 309 432 -234 7 1546 250 188 21 0 chr6 126037710 126037758 -23479279 + L2a LINE L2 3378 3426 0 7 1546 334 381 27 45 chr6 126037760 126037980 -23479057 + Tigger8 DNA MER2_type 447 662 -4 7 1546 255 331 116 36 chr6 126038978 126039116 -23477921 - B4 SINE B4 -19 273 125 7 1546 513 0 0 0 chr6 126039314 126039371 -23477666 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 7 1546 201 162 0 0 chr6 126039481 126039518 -23477519 + A-rich Low_complexity Low_complexity 1 37 0 7 1546 627 336 46 46 chr6 126039525 126039806 -23477231 + B4A SINE B4 12 292 0 8 1546 270 128 43 0 chr6 126040136 126040183 -23476854 + Lx7 LINE L1 6826 6874 -822 8 1546 1377 234 80 46 chr6 126041342 126041716 -23475321 + MTE2b LTR MaLR 5 383 -1 8 1546 21 0 0 0 chr6 126041977 126041998 -23475039 + AT_rich Low_complexity Low_complexity 1 21 0 8 1546 555 74 0 0 chr6 126043597 126043678 -23473359 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 8 1546 761 320 36 9 chr6 126043692 126043914 -23473123 + B4 SINE B4 2 229 -63 8 1546 1857 129 78 43 chr6 126043914 126044261 -23472776 + ORR1B2 LTR MaLR 1 359 -8 8 1546 423 0 0 0 chr6 126044316 126044363 -23472674 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1546 310 195 0 135 chr6 126044765 126044854 -23472183 - MLT1A LTR MaLR -252 122 46 8 1546 260 258 32 80 chr6 126044872 126044965 -23472072 + PB1D10 SINE Alu 21 103 -17 8 1546 673 200 13 36 chr6 126045752 126045914 -23471123 + MER5A DNA MER1_type 1 175 -14 9 1546 293 348 48 27 chr6 126046050 126046236 -23470801 + L2c LINE L2 3025 3214 -173 9 1546 228 274 22 67 chr6 126046918 126047008 -23470029 + MIR SINE MIR 18 103 -159 9 1546 273 146 0 0 chr6 126047452 126047500 -23469537 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1546 918 229 52 28 chr6 126047750 126047961 -23469076 + B3 SINE B2 1 216 0 9 1546 528 237 0 0 chr6 126047961 126048092 -23468945 + GA-rich Low_complexity Low_complexity 5 135 0 9 1546 186 43 0 0 chr6 126048093 126048116 -23468921 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 9 1546 242 0 61 0 chr6 126048137 126048170 -23468867 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 9 1546 549 44 0 0 chr6 126049697 126049765 -23467272 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 9 1546 1368 67 0 0 chr6 126049774 126049954 -23467083 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 9 1546 196 131 21 21 chr6 126049954 126049993 -23467044 + CT-rich Low_complexity Low_complexity 1 40 0 1 1546 486 0 0 0 chr6 126050976 126051030 -23466007 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1546 223 186 0 0 chr6 126051090 126051133 -23465904 + A-rich Low_complexity Low_complexity 1 43 0 1 1546 502 267 112 68 chr6 126054543 126054748 -23462289 + B3 SINE B2 3 216 0 1 1546 182 148 0 0 chr6 126055752 126055779 -23461258 - MIR SINE MIR -67 141 115 1 1546 183 100 0 0 chr6 126057170 126057200 -23459837 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1546 332 253 61 19 chr6 126057254 126057424 -23459613 - L1MA4A LINE L1 -266 6034 5854 1 1546 215 300 110 11 chr6 126058299 126058390 -23458647 - MER91B DNA Tip100 -61 129 30 1 1546 430 304 0 0 chr6 126058757 126058872 -23458165 + PB1D10 SINE Alu 2 116 -1 1 1546 197 210 0 16 chr6 126059734 126059759 -23457278 + polypyrimidine Low_complexity Low_complexity 39 63 0 1 1546 1214 95 0 6 chr6 126059759 126059939 -23457098 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 1 1546 197 210 0 16 chr6 126059939 126059976 -23457061 + polypyrimidine Low_complexity Low_complexity 2 38 0 1 1546 524 297 0 55 chr6 126060012 126060158 -23456879 - ID_B1 SINE B4 -81 143 6 1 1546 679 275 77 5 chr6 126061399 126061593 -23455444 - MIRb SINE MIR -27 241 34 1 1546 279 79 0 0 chr6 126061713 126061751 -23455286 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1546 225 343 0 0 chr6 126061964 126062031 -23455006 + ID4_ SINE ID 5 71 -12 1 1546 245 75 25 0 chr6 126062153 126062193 -23454844 + (ATTG)n Simple_repeat Simple_repeat 3 43 0 1 1546 287 244 0 49 chr6 126062493 126062575 -23454462 - Charlie4z DNA MER1_type -77 90 13 1 1546 716 316 93 12 chr6 126062665 126062924 -23454113 - B4A SINE B4 0 292 13 1 1546 342 0 0 0 chr6 126064042 126064080 -23452957 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1546 301 148 12 12 chr6 126064589 126064671 -23452366 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1546 421 333 55 30 chr6 126067755 126068031 -23449006 + B4A SINE B4 1 292 0 1 1546 1331 217 171 17 chr6 126068279 126068630 -23448407 + MTD LTR MaLR 1 405 -14 1 1546 898 220 86 72 chr6 126068791 126069149 -23447888 + RMER20B LTR ERVK 165 591 -36 1 1546 217 292 126 28 chr6 126069680 126069844 -23447193 - MIRb SINE MIR -88 180 2 1 1546 402 283 0 0 chr6 126070102 126070194 -23446843 + B4A SINE B4 24 115 -177 1 1546 276 326 41 31 chr6 126070542 126070640 -23446397 - PB1D10 SINE Alu -11 106 8 1 1546 281 323 149 26 chr6 126070841 126071143 -23445894 + L2 LINE L2 462 800 -2619 1 1546 501 213 0 11 chr6 126071173 126071268 -23445769 - PB1D10 SINE Alu 0 117 24 1 1546 504 297 7 35 chr6 126071349 126071492 -23445545 + B4A SINE B4 154 292 0 1 1546 575 112 0 10 chr6 126071495 126071594 -23445443 + (CA)n Simple_repeat Simple_repeat 2 99 0 1 1546 234 45 68 0 chr6 126072230 126072274 -23444763 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 1 1546 842 93 17 0 chr6 126073397 126073515 -23443522 - PB1D9 SINE Alu 0 120 1 1 1546 808 221 142 0 chr6 126074079 126074283 -23442754 + ORR1D2 LTR MaLR 132 364 -6 1 1546 191 330 93 19 chr6 126075221 126075329 -23441708 - MIR SINE MIR -73 135 20 1 1546 1017 114 149 6 chr6 126076537 126076705 -23440332 + B2_Mm2 SINE B2 2 193 -2 1 1546 804 132 0 0 chr6 126077583 126077712 -23439325 + (TAAA)n Simple_repeat Simple_repeat 2 130 0 1 1546 432 0 0 0 chr6 126077832 126077880 -23439157 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1546 410 19 120 0 chr6 126078191 126078299 -23438738 + (GGGA)n Simple_repeat Simple_repeat 2 122 0 1 1546 254 337 60 20 chr6 126078731 126078849 -23438188 - MIRm SINE MIR -33 175 60 1 1546 396 0 0 0 chr6 126079448 126079492 -23437545 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1546 23 33 0 0 chr6 126081434 126081464 -23435573 + AT_rich Low_complexity Low_complexity 1 30 0 1 1546 199 252 165 35 chr6 126081491 126081606 -23435431 - MIR3 SINE MIR -10 198 69 1 1546 1113 210 18 18 chr6 126081845 126082068 -23434969 - ID_B1 SINE B4 0 224 2 1 1546 2221 143 40 19 chr6 126082466 126082844 -23434193 + ORR1B1 LTR MaLR 1 386 -8 1 1546 376 274 58 52 chr6 126083752 126083906 -23433131 + MER117 DNA MER1_type 8 162 -35 1 1546 268 136 0 43 chr6 126083901 126083947 -23433090 + MER117 DNA MER1_type 109 152 -45 1 1546 3553 18 2 0 chr6 126085341 126085736 -23431301 - MTA_Mm LTR MaLR 0 396 1 1 1546 9380 29 3 2 chr6 126085736 126086833 -23430204 - MTA_Mm-int LTR MaLR 0 1098 1 1 1546 3553 18 2 0 chr6 126086833 126087228 -23429809 - MTA_Mm LTR MaLR 0 396 1 1 1546 186 43 0 0 chr6 126088517 126088540 -23428497 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1546 378 0 0 0 chr6 126088664 126088706 -23428331 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1546 347 141 0 15 chr6 126089203 126089268 -23427769 + GA-rich Low_complexity Low_complexity 1 64 0 1 1546 451 82 27 0 chr6 126089345 126089418 -23427619 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1547 408 71 0 0 chr6 126091391 126091447 -23425590 + (TCC)n Simple_repeat Simple_repeat 2 57 0 1 1547 325 331 60 55 chr6 126092376 126092558 -23424479 + MLT1C LTR MaLR 1 183 -284 1 1547 481 350 71 10 chr6 126092599 126092795 -23424242 + MLT1C LTR MaLR 253 460 -7 1 1547 287 305 97 21 chr6 126093667 126093811 -23423226 - MIR SINE MIR -76 186 32 1 1547 822 256 57 38 chr6 126094418 126094629 -23422408 + ID_B1 SINE B4 1 215 -9 1 1547 1336 236 86 64 chr6 126094836 126095031 -23422006 - MTD LTR MaLR -3 416 211 1 1547 3339 37 0 12 chr6 126095031 126095438 -23421599 - L1Md_F2 LINE L1 0 6582 6181 1 1547 1336 236 86 64 chr6 126095438 126095649 -23421388 - MTD LTR MaLR -209 210 1 1 1547 459 0 0 0 chr6 126095947 126095998 -23421039 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1547 267 302 56 56 chr6 126096163 126096289 -23420748 - L2a LINE L2 -52 3374 3249 1 1547 237 240 57 59 chr6 126096293 126096391 -23420646 + MIR SINE MIR 84 187 -81 1 1547 225 0 0 0 chr6 126098291 126098316 -23418721 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1547 405 0 0 0 chr6 126098806 126098851 -23418186 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1547 908 219 55 14 chr6 126099540 126099758 -23417279 + MTD LTR MaLR 193 419 0 1 1547 258 243 14 14 chr6 126100234 126100305 -23416732 - MLT1E1 LTR MaLR -340 314 244 1 1547 677 110 9 0 chr6 126100308 126100417 -23416620 + (GAAA)n Simple_repeat Simple_repeat 1 110 0 1 1547 897 194 101 15 chr6 126102928 126103127 -23413910 + B3 SINE B2 1 216 0 1 1547 263 313 23 35 chr6 126103548 126103572 -23413465 + B4 SINE B4 65 87 -205 1 1547 477 271 27 48 chr6 126103572 126103719 -23413318 + B1F SINE Alu 1 144 -5 1 1547 210 105 0 0 chr6 126103719 126103757 -23413280 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 1 1547 312 274 186 22 chr6 126105395 126105578 -23411459 - L2c LINE L2 -42 3345 3133 1 1547 453 36 0 0 chr6 126105656 126105711 -23411326 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1547 248 245 0 0 chr6 126106388 126106441 -23410596 - MIR3 SINE MIR -52 156 104 1 1547 469 0 33 0 chr6 126106816 126106877 -23410160 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 1547 342 0 0 0 chr6 126107086 126107124 -23409913 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1547 204 271 70 14 chr6 126107980 126108051 -23408986 + MIRb SINE MIR 173 247 -21 1 1547 189 290 111 16 chr6 126108233 126108296 -23408741 + L3 LINE CR1 2133 2201 -2288 1 1547 275 320 67 104 chr6 126108372 126108536 -23408501 - MIR3 SINE MIR -8 200 43 1 1547 186 143 0 0 chr6 126109002 126109037 -23408000 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1 1547 180 0 0 0 chr6 126109035 126109055 -23407982 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1547 360 64 0 0 chr6 126109329 126109376 -23407661 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1547 23 0 0 0 chr6 126111868 126111891 -23405146 + AT_rich Low_complexity Low_complexity 1 23 0 1 1547 429 20 0 0 chr6 126112335 126112385 -23404652 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1547 297 0 0 0 chr6 126114459 126114492 -23402545 + (GGA)n Simple_repeat Simple_repeat 2 34 0 1 1547 408 40 0 0 chr6 126115357 126115407 -23401630 + (TTTC)n Simple_repeat Simple_repeat 4 53 0 1 1547 211 246 29 14 chr6 126116800 126116870 -23400167 + C-rich Low_complexity Low_complexity 3 73 0 1 1547 960 148 204 0 chr6 126118801 126118977 -23398060 + B3 SINE B2 4 215 -1 1 1547 1224 54 0 0 chr6 126119270 126119417 -23397620 + B1_Mus2 SINE Alu 1 147 0 1 1547 521 99 12 0 chr6 126119417 126119498 -23397539 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 1 1547 288 281 83 30 chr6 126120549 126120681 -23396356 + Ricksha_c DNA MuDR 1481 1619 -429 1 1547 1176 262 52 22 chr6 126120695 126120792 -23396245 + MTEb LTR MaLR 1 100 -279 1 1547 228 35 0 0 chr6 126120792 126120821 -23396216 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 1 1547 1176 262 52 22 chr6 126120821 126120942 -23396095 + MTEb LTR MaLR 101 220 -159 1 1547 378 0 0 0 chr6 126120942 126120984 -23396053 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1547 1176 262 52 22 chr6 126120984 126121130 -23395907 + MTEb LTR MaLR 221 375 -4 1 1547 377 275 48 48 chr6 126122373 126122541 -23394496 - MIR3 SINE MIR -24 184 17 1 1547 336 291 109 24 chr6 126122887 126123098 -23393939 - MER44A DNA MER2_type -88 251 23 1 1547 274 353 88 8 chr6 126124072 126124312 -23392725 + L1M5 LINE L1 2509 2767 -3379 1 1547 880 277 98 106 chr6 126124384 126124542 -23392495 + L1ME2z LINE L1 5805 5911 -533 1 1547 810 240 11 6 chr6 126124542 126124722 -23392315 - B3A SINE B2 -16 182 2 1 1547 880 277 98 106 chr6 126124722 126125193 -23391844 + L1ME2z LINE L1 5912 6429 -15 1 1547 253 357 57 13 chr6 126125216 126125443 -23391594 + L1MEg LINE L1 93 329 -5755 1 1547 310 322 95 36 chr6 126125712 126125934 -23391103 + L1MEg LINE L1 993 1227 -4857 1 1547 460 282 52 26 chr6 126126409 126126602 -23390435 + B3A SINE B2 1 198 0 1 1547 32 0 0 0 chr6 126126609 126126641 -23390396 + AT_rich Low_complexity Low_complexity 1 32 0 1 1547 301 161 113 0 chr6 126126883 126126945 -23390092 - ID4 SINE ID -11 72 4 1 1547 1184 68 0 0 chr6 126126994 126127141 -23389896 - B1_Mm SINE Alu 0 147 1 2 1547 2199 74 47 3 chr6 126127145 126127471 -23389566 - L1_Mus1 LINE L1 0 6567 6249 2 1547 278 340 28 9 chr6 126128311 126128418 -23388619 + MLT1B LTR MaLR 262 370 -20 2 1547 239 264 43 11 chr6 126128713 126128805 -23388232 + RMER15 LTR ERVL 406 500 -75 2 1547 1650 24 19 5 chr6 126129122 126129329 -23387708 + L1Md_F3 LINE L1 6372 6581 -3 2 1547 204 40 0 0 chr6 126129400 126129425 -23387612 + (TTTAA)n Simple_repeat Simple_repeat 5 29 0 2 1547 2817 54 6 11 chr6 126129718 126130075 -23386962 - L1_Mus1 LINE L1 0 6567 6213 2 1547 909 77 14 0 chr6 126130109 126130252 -23386785 - ORR1A4 LTR MaLR -184 145 1 2 1547 869 289 40 37 chr6 126132582 126132934 -23384103 + ORR1E LTR MaLR 1 353 -6 2 1547 232 175 32 0 chr6 126132968 126133031 -23384006 + CT-rich Low_complexity Low_complexity 3 67 0 2 1547 211 200 0 0 chr6 126133038 126133083 -23383954 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 2 1547 713 179 21 0 chr6 126133084 126133224 -23383813 - B1_Mur3 SINE Alu -5 144 2 2 1547 1130 206 99 7 chr6 126133703 126133997 -23383040 - MT2A LTR ERVL -2 531 211 2 1547 401 330 33 6 chr6 126134165 126134345 -23382692 + MLT1B LTR MaLR 9 193 -197 2 1547 229 249 0 23 chr6 126134378 126134465 -23382572 + B1F SINE Alu 62 139 -10 2 1547 456 330 109 20 chr6 126134636 126134837 -23382200 + MLT1B LTR MaLR 172 390 0 2 1547 492 132 0 0 chr6 126135806 126135889 -23381148 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1547 1165 236 159 27 chr6 126136016 126136386 -23380651 - MTD LTR MaLR 0 419 1 2 1547 578 91 10 0 chr6 126136674 126136773 -23380264 + (GA)n Simple_repeat Simple_repeat 1 100 0 2 1547 398 302 96 87 chr6 126138162 126138485 -23378552 + ORR1E LTR MaLR 4 329 -30 2 1547 2089 185 63 12 chr6 126138579 126138994 -23378043 + Lx5 LINE L1 6614 7049 -1 2 1547 481 176 35 0 chr6 126139323 126139465 -23377572 + (CA)n Simple_repeat Simple_repeat 1 147 0 2 1547 721 130 31 0 chr6 126139476 126139638 -23377399 + (CA)n Simple_repeat Simple_repeat 1 167 0 2 1547 740 145 15 42 chr6 126139668 126140006 -23377031 + (CA)n Simple_repeat Simple_repeat 1 328 0 2 1547 362 267 40 62 chr6 126140550 126140726 -23376311 - MIR3 SINE MIR -11 197 26 2 1547 196 277 60 0 chr6 126141695 126141778 -23375259 - MIR SINE MIR -63 145 58 2 1547 513 32 0 0 chr6 126142359 126142422 -23374615 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1547 195 384 9 0 chr6 126142927 126143039 -23373998 - L2b LINE L2 0 3375 3263 2 1547 583 286 10 41 chr6 126143482 126143663 -23373374 + B3 SINE B2 1 174 -42 2 1547 468 0 0 0 chr6 126143663 126143715 -23373322 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1547 583 286 10 41 chr6 126143715 126143730 -23373307 + B3 SINE B2 175 191 -25 2 1547 767 259 91 0 chr6 126144119 126144316 -23372721 - B3 SINE B2 -1 215 1 2 1547 21 71 0 0 chr6 126144318 126144360 -23372677 + AT_rich Low_complexity Low_complexity 1 42 0 2 1547 350 217 0 67 chr6 126145454 126145632 -23371405 + (CCA)n Simple_repeat Simple_repeat 1 166 0 2 1547 204 167 24 0 chr6 126146177 126146219 -23370818 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 2 1547 542 285 132 31 chr6 126146277 126146603 -23370434 + ORR1E LTR MaLR 1 359 0 2 1547 513 0 0 0 chr6 126146980 126147037 -23370000 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 1547 23 0 0 0 chr6 126147774 126147797 -23369240 + AT_rich Low_complexity Low_complexity 1 23 0 2 1547 453 274 8 30 chr6 126147855 126147987 -23369050 - RSINE1 SINE B4 -36 129 1 2 1547 1013 312 96 20 chr6 126148089 126148629 -23368408 - Lx8 LINE L1 -2 7471 6891 2 1547 640 277 116 19 chr6 126148818 126149197 -23367840 + Charlie4a DNA MER1_type 72 487 -21 2 1547 547 224 88 15 chr6 126149205 126149341 -23367696 + Lx6 LINE L1 7248 7393 -67 2 1547 473 323 7 0 chr6 126150347 126150502 -23366535 + RSINE1 SINE B4 2 157 -8 2 1547 1381 71 44 0 chr6 126151529 126151711 -23365326 + B2_Mm1t SINE B2 2 191 -2 2 1547 198 192 0 0 chr6 126154030 126154082 -23362955 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1547 707 189 0 11 chr6 126154097 126154279 -23362758 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1547 268 262 222 0 chr6 126154605 126154731 -23362306 + MLT1K LTR MaLR 368 521 -74 2 1547 243 0 0 0 chr6 126155460 126155487 -23361550 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1547 801 288 11 0 chr6 126155905 126156096 -23360941 + B3 SINE B2 2 194 -22 2 1547 9362 185 306 27 chr6 126156105 126159891 -23357146 + Lx5 LINE L1 1618 6343 -707 2 1547 1046 243 98 2 chr6 126159889 126160157 -23356880 + Lx5 LINE L1 6786 7045 -5 2 1547 585 42 0 0 chr6 126162389 126162461 -23354576 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1547 284 70 23 0 chr6 126162461 126162504 -23354533 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1547 517 170 18 0 chr6 126163340 126163452 -23353585 + CT-rich Low_complexity Low_complexity 2 115 0 2 1547 380 300 58 85 chr6 126164458 126164705 -23352332 - MLT1A1 LTR MaLR -146 262 23 2 1547 341 229 82 0 chr6 126164802 126164924 -23352113 - MER63C DNA AcHobo -23 907 776 2 1547 360 323 47 16 chr6 126164946 126165075 -23351962 - B4A SINE B4 0 292 160 2 1547 281 275 118 17 chr6 126165155 126165322 -23351715 - MER63C DNA AcHobo -141 789 597 2 1547 535 312 104 29 chr6 126165397 126165563 -23351474 - MER63C DNA AcHobo -430 500 322 2 1547 2875 132 7 0 chr6 126165563 126165989 -23351048 - Lx2 LINE L1 -1 6996 6568 2 1547 535 312 104 29 chr6 126165989 126166208 -23350829 - MER63C DNA AcHobo -609 321 86 2 1547 698 154 8 0 chr6 126168606 126168736 -23348301 + (TG)n Simple_repeat Simple_repeat 2 132 0 2 1547 315 227 80 0 chr6 126168804 126168879 -23348158 + RMER15-int LTR ERVL 4869 4949 -50 2 1547 1270 254 96 16 chr6 126170395 126170760 -23346277 - MTD LTR MaLR -14 405 12 2 1547 206 176 35 12 chr6 126170772 126170858 -23346179 + A-rich Low_complexity Low_complexity 3 90 0 2 1547 304 283 101 0 chr6 126171033 126171171 -23345866 - MIR SINE MIR -105 157 6 2 1547 1846 206 53 17 chr6 126171694 126172108 -23344929 + Lx9 LINE L1 7213 7641 -3 2 1547 1124 220 10 0 chr6 126172129 126172329 -23344708 - B3 SINE B2 -10 206 5 2 1547 314 143 16 0 chr6 126172480 126172543 -23344494 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1547 392 331 27 7 chr6 126172553 126172702 -23344335 - Lx8 LINE L1 -149 7324 7173 2 1547 3426 24 42 0 chr6 126172816 126173196 -23343841 + MTA_Mm LTR MaLR 1 396 0 2 1547 224 200 48 29 chr6 126174012 126174115 -23342922 + (TTATA)n Simple_repeat Simple_repeat 1 105 0 2 1547 1629 20 0 61 chr6 126174130 126174380 -23342657 - L1Md_F2 LINE L1 0 6582 6382 2 1547 426 82 0 0 chr6 126174380 126174404 -23342633 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1547 9383 33 0 0 chr6 126174404 126176155 -23340882 - L1Md_T LINE L1 0 6582 4832 2 1547 450 53 0 0 chr6 126177328 126177385 -23339652 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 2 1547 201 356 81 48 chr6 126177549 126177673 -23339364 + L2a LINE L2 2995 3122 -304 2 1547 676 67 29 29 chr6 126177886 126178024 -23339013 + (TCTA)n Simple_repeat Simple_repeat 2 139 0 2 1547 284 94 0 19 chr6 126178025 126178079 -23338958 + (CCTA)n Simple_repeat Simple_repeat 4 56 0 2 1547 600 318 25 5 chr6 126178096 126178292 -23338745 - ID_B1 SINE B4 -22 202 3 2 1547 1446 249 77 75 chr6 126178853 126179479 -23337558 - Lx9 LINE L1 -28 7616 6990 2 1547 260 304 0 0 chr6 126180473 126180542 -23336495 - Lx8 LINE L1 -365 7108 7040 2 1547 548 146 22 33 chr6 126180546 126180638 -23336399 - B1_Mus2 SINE Alu -51 96 6 2 1547 334 240 19 111 chr6 126180638 126180654 -23336383 - MT2B LTR ERVL -350 251 154 2 1547 509 164 15 52 chr6 126181764 126181899 -23335138 - L1_Mus3 LINE L1 -2 6636 6507 2 1547 488 248 46 23 chr6 126182113 126182313 -23334724 + L1MB7 LINE L1 5298 5502 -677 2 1547 859 282 134 53 chr6 126182392 126182976 -23334061 + L1MB7 LINE L1 5495 6125 -59 2 1547 309 51 0 0 chr6 126183066 126183105 -23333932 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1547 813 33 49 0 chr6 126183503 126183625 -23333412 + (TCTCTG)n Simple_repeat Simple_repeat 2 129 0 2 1547 238 189 0 0 chr6 126183839 126183876 -23333161 + MIRm SINE MIR 119 155 -121 2 1547 326 259 12 0 chr6 126183879 126183960 -23333077 + ID4_ SINE ID 2 83 0 2 1547 2548 44 0 36 chr6 126184586 126184953 -23332084 - L1Md_F3 LINE L1 0 6584 6245 2 1547 721 271 0 40 chr6 126185408 126185585 -23331452 + B3 SINE B2 41 210 -6 2 1547 1548 246 39 25 chr6 126186960 126187323 -23329714 + ORR1D2 LTR MaLR 1 368 -2 2 1547 252 203 84 48 chr6 126187618 126187701 -23329336 + MTE2a LTR MaLR 279 364 -15 2 1547 1193 303 74 58 chr6 126188101 126188707 -23328330 + RLTR18 LTR ERVK 1 616 0 2 1547 364 345 38 38 chr6 126188729 126188913 -23328124 + MIRb SINE MIR 76 259 -9 2 1547 345 62 0 0 chr6 126189637 126189685 -23327352 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1547 618 189 0 0 chr6 126189729 126189909 -23327128 + CT-rich Low_complexity Low_complexity 1 180 0 2 1547 456 19 0 0 chr6 126189909 126189962 -23327075 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1547 945 234 84 0 chr6 126189991 126190205 -23326832 - B4 SINE B4 -2 290 59 2 1547 239 150 25 0 chr6 126190964 126191004 -23326033 + MER63D DNA AcHobo 38 78 -983 2 1547 1321 269 104 12 chr6 126191606 126191952 -23325085 - MTE2a LTR MaLR 0 379 2 2 1547 3759 63 37 2 chr6 126192840 126193299 -23323738 - MT2C_Mm LTR ERVL 0 475 1 2 1547 343 296 59 34 chr6 126194017 126194136 -23322901 + MER5A DNA MER1_type 68 189 0 2 1547 432 317 13 65 chr6 126194250 126194405 -23322632 - B1F SINE Alu 0 149 3 2 1547 612 314 211 33 chr6 126195603 126196295 -23320742 + L3 LINE CR1 3216 4030 -459 2 1547 2856 160 9 63 chr6 126196652 126197179 -23319858 + RMER19C LTR ERVK 113 611 0 2 1547 1226 174 31 31 chr6 126197466 126197624 -23319413 - URR1A DNA MER1_type -1 225 66 2 1547 2801 36 0 151 chr6 126197624 126198054 -23318983 + RLTR10B2 LTR ERVK 1 365 0 2 1547 1226 174 31 31 chr6 126198054 126198120 -23318917 - URR1A DNA MER1_type -161 65 1 2 1547 231 229 58 46 chr6 126198714 126198801 -23318236 + Charlie8 DNA MER1_type 42 129 -2299 3 1547 360 0 0 0 chr6 126198831 126198871 -23318166 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 1547 7904 163 181 19 chr6 126199064 126199718 -23317319 + L1_Mur1 LINE L1 720 1499 -2413 3 1547 1178 79 0 0 chr6 126199718 126199857 -23317180 + B1_Mm SINE Alu 1 139 -8 3 1547 300 111 0 0 chr6 126199857 126199911 -23317126 + (CTAA)n Simple_repeat Simple_repeat 3 56 0 3 1547 7904 123 31 32 chr6 126199911 126200987 -23316050 + L1_Mur1 LINE L1 1500 2568 -1344 3 1547 1958 251 81 120 chr6 126200987 126201977 -23315060 - RMER17B LTR ERVK -7 951 1 3 1547 17796 167 24 15 chr6 126201977 126202846 -23314191 + Lx2B LINE L1 2581 3478 -2408 3 1547 330 67 0 0 chr6 126202846 126202891 -23314146 + (CCAA)n Simple_repeat Simple_repeat 4 48 0 3 1547 17796 153 17 16 chr6 126202891 126206419 -23310618 + Lx2B LINE L1 3479 6990 -10 3 1547 399 309 90 18 chr6 126206569 126206860 -23310177 + L1MEf LINE L1 1955 2246 -3996 3 1547 284 335 35 94 chr6 126206870 126207041 -23309996 + RSINE1 SINE B4 4 164 -1 3 1547 36637 65 8 1 chr6 126207117 126213302 -23303735 - L1Md_F2 LINE L1 -1 6581 355 3 1547 486 316 113 57 chr6 126213311 126213824 -23303213 + L1MEf LINE L1 2272 2813 -3333 3 1547 596 302 19 77 chr6 126214221 126214429 -23302608 + B3A SINE B2 2 197 -1 3 1547 4345 125 24 8 chr6 126214577 126215214 -23301823 - Lx2 LINE L1 -1 6996 6350 3 1547 6758 145 6 4 chr6 126215214 126216830 -23300207 + Lx2 LINE L1 4752 6370 -627 3 1547 2146 161 0 0 chr6 126216822 126217176 -23299861 - Lx5 LINE L1 -1016 6034 5681 3 1547 20049 186 47 13 chr6 126217645 126220834 -23296203 - Lx5 LINE L1 -6 7044 3791 3 1547 180 0 0 0 chr6 126220834 126220854 -23296183 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1547 20049 172 47 16 chr6 126220854 126220978 -23296059 - Lx5 LINE L1 -2087 3790 3673 3 1547 2657 161 86 28 chr6 126220978 126221477 -23295560 + RLTR12B LTR ERVK 1 528 0 3 193 20049 176 51 15 chr6 126221477 126223834 -23293203 - Lx5 LINE L1 -2205 3672 1180 3 1548 410 366 98 24 chr6 126224766 126225121 -23291916 - L2a LINE L2 -170 3256 2876 3 1548 357 296 66 7 chr6 126225331 126225467 -23291570 - MLT1J LTR MaLR -27 485 342 3 1548 673 256 39 44 chr6 126226620 126226800 -23290237 + B3A SINE B2 2 180 -18 3 1548 1406 205 162 8 chr6 126226802 126227161 -23289876 - MTD LTR MaLR -1 418 5 3 1548 465 34 0 0 chr6 126227162 126227221 -23289816 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1548 406 244 0 24 chr6 126230042 126230126 -23286911 + RSINE1 SINE B4 55 136 -29 3 1548 618 315 24 0 chr6 126230310 126230475 -23286562 + B3A SINE B2 1 169 -29 3 1548 362 336 22 15 chr6 126231886 126232022 -23285015 + MIR SINE MIR 32 168 -94 3 1548 672 315 72 73 chr6 126232049 126232459 -23284578 + MTE2a LTR MaLR 1 419 0 3 1548 1441 96 0 11 chr6 126232957 126233147 -23283890 + B2_Mm2 SINE B2 2 189 -6 3 1548 1062 255 14 82 chr6 126233305 126233596 -23283441 - B4 SINE B4 0 292 22 3 1548 242 204 37 0 chr6 126235016 126235070 -23281967 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 3 1548 201 196 0 0 chr6 126235429 126235475 -23281562 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1548 314 308 142 4 chr6 126235567 126235850 -23281187 - L1MA4 LINE L1 -19 6281 5947 3 1548 249 255 74 11 chr6 126235941 126236036 -23281001 - L1ME2z LINE L1 -436 6008 5908 3 1548 544 316 78 48 chr6 126236037 126236552 -23280485 - L1M5 LINE L1 -2167 3979 3450 3 1548 484 305 63 48 chr6 126236718 126237176 -23279861 - L1M5 LINE L1 -2571 3575 3111 3 1548 187 179 0 49 chr6 126237710 126237751 -23279286 + L2 LINE L2 2295 2333 -1086 3 1548 394 281 32 22 chr6 126240323 126240464 -23276573 + B1F SINE Alu 3 141 -6 3 1548 208 338 83 23 chr6 126240586 126240719 -23276318 - MIR3 SINE MIR -28 180 40 3 1548 318 402 58 22 chr6 126240755 126240979 -23276058 + LTR16A LTR ERVL 91 322 -129 3 1548 486 0 0 0 chr6 126241314 126241368 -23275669 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1548 593 250 33 0 chr6 126241371 126241491 -23275546 - RSINE1 SINE B4 -34 131 8 3 1548 548 223 119 55 chr6 126242448 126242526 -23274511 + L1MA4 LINE L1 5709 5798 -502 3 1548 450 53 0 0 chr6 126242526 126242583 -23274454 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1548 548 223 119 55 chr6 126242583 126242722 -23274315 + L1MA4 LINE L1 5799 5940 -360 3 1548 467 258 164 15 chr6 126242984 126243118 -23273919 + B3 SINE B2 1 154 -62 3 1548 450 0 0 0 chr6 126243128 126243178 -23273859 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1548 1095 95 0 3 chr6 126243802 126243996 -23273041 + (GAA)n Simple_repeat Simple_repeat 1 193 0 3 1548 1413 51 0 0 chr6 126243996 126244174 -23272863 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 3 1548 374 131 0 14 chr6 126244174 126244204 -23272833 + (GAA)n Simple_repeat Simple_repeat 3 32 0 3 1548 1937 213 75 73 chr6 126244228 126244774 -23272263 + RMER15 LTR ERVL 27 573 -2 3 1548 198 0 0 0 chr6 126244829 126244851 -23272186 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1548 585 290 148 7 chr6 126245117 126245388 -23271649 - MLT1B LTR MaLR 0 390 82 3 1548 2344 312 52 26 chr6 126246073 126247133 -23269904 - Lx7 LINE L1 0 7473 6387 3 1548 817 144 6 116 chr6 126247133 126247306 -23269731 + ORR1C1 LTR MaLR 1 154 -224 3 1548 962 172 9 0 chr6 126247604 126247932 -23269105 + GA-rich Low_complexity Low_complexity 1 331 0 3 1548 254 29 0 28 chr6 126248436 126248472 -23268565 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1548 303 271 14 36 chr6 126249369 126249463 -23267574 - PB1D10 SINE Alu -21 96 2 3 1548 318 50 0 0 chr6 126249486 126249526 -23267511 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1548 459 0 0 0 chr6 126249526 126249576 -23267461 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1548 674 279 139 43 chr6 126249583 126249841 -23267196 - B4A SINE B4 -9 283 1 3 1548 1517 227 93 97 chr6 126250820 126251346 -23265691 - RLTR11A LTR ERVK 0 528 5 3 1548 273 230 0 0 chr6 126253755 126253829 -23263208 + (TG)n Simple_repeat Simple_repeat 2 75 0 3 1548 618 14 0 0 chr6 126253868 126253939 -23263098 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1548 280 305 12 0 chr6 126253939 126254021 -23263016 - MIRc SINE MIR -162 106 24 3 1548 261 211 139 14 chr6 126254461 126254533 -23262504 + ID4_ SINE ID 2 82 -1 3 1548 1778 228 11 76 chr6 126255199 126255703 -23261334 + ORR1D2-int LTR MaLR 962 1559 -21 3 1548 225 377 95 16 chr6 126255838 126256081 -23260956 - L2a LINE L2 -247 3179 2918 3 1548 212 288 61 28 chr6 126256519 126256641 -23260396 + MIR SINE MIR 59 192 -76 3 1548 275 275 104 42 chr6 126257030 126257174 -23259863 + MIRc SINE MIR 13 165 -103 3 1548 469 289 56 46 chr6 126257192 126257388 -23259649 + MIRb SINE MIR 42 239 -29 3 1548 323 354 41 20 chr6 126258652 126258799 -23258238 + MIR3 SINE MIR 46 195 -13 3 1548 182 105 26 0 chr6 126259335 126259373 -23257664 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1548 276 328 109 11 chr6 126261706 126261905 -23255132 - MIRc SINE MIR -27 241 24 3 1548 279 0 0 0 chr6 126262383 126262414 -23254623 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1548 2000 153 5 3 chr6 126263319 126263663 -23253374 - L1_Mm LINE L1 -1279 4867 4489 3 1548 7823 82 22 5 chr6 126263662 126265002 -23252035 + L1_Mus3 LINE L1 5264 6637 -1 3 1548 825 295 21 35 chr6 126266009 126266167 -23250870 - L1MA4 LINE L1 -1534 5926 5771 3 1548 262 0 26 26 chr6 126266167 126266206 -23250831 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1548 825 286 22 32 chr6 126266206 126266401 -23250636 - L1MA4 LINE L1 -495 5805 5614 3 1548 183 286 47 16 chr6 126267804 126267868 -23249169 + MIR SINE MIR 87 152 -56 3 1548 262 345 35 9 chr6 126267977 126268091 -23248946 + B1F SINE Alu 33 149 0 3 1548 215 306 125 0 chr6 126268101 126268173 -23248864 + ID4_ SINE ID 3 83 0 3 1548 289 311 0 0 chr6 126269410 126269471 -23247566 + RMER30 DNA MER1_type 135 195 -7 3 1548 214 287 85 25 chr6 126269636 126269754 -23247283 + L2 LINE L2 2355 2479 -940 3 1548 449 316 19 19 chr6 126269910 126270065 -23246972 - RCHARR1 DNA MER1_type -783 191 37 3 1548 586 340 0 0 chr6 126270088 126270229 -23246808 + B3A SINE B2 1 141 -57 3 1548 438 20 0 0 chr6 126270239 126270290 -23246747 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1548 234 105 0 0 chr6 126270292 126270330 -23246707 + (GGGAGA)n Simple_repeat Simple_repeat 1 38 0 3 1548 202 150 25 0 chr6 126270412 126270452 -23246585 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1548 450 36 0 0 chr6 126270459 126270515 -23246522 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 3 1548 184 381 0 20 chr6 126271052 126271151 -23245886 + MIRc SINE MIR 21 117 -151 3 1548 318 280 144 0 chr6 126273312 126273437 -23243600 + RMER30 DNA MER1_type 1 143 -59 3 1548 239 267 12 0 chr6 126273620 126273706 -23243331 + (TG)n Simple_repeat Simple_repeat 1 87 0 3 1548 211 179 0 35 chr6 126273769 126273827 -23243210 + T-rich Low_complexity Low_complexity 4 59 0 3 1548 415 317 37 12 chr6 126273878 126274045 -23242992 - B4 SINE B4 -118 174 1 3 1548 188 35 35 0 chr6 126274046 126274075 -23242962 + (CAAT)n Simple_repeat Simple_repeat 1 30 0 3 1548 232 344 22 0 chr6 126274863 126274953 -23242084 + Lx8 LINE L1 7181 7272 -201 3 1548 455 284 106 83 chr6 126275178 126275527 -23241510 + MLT1B LTR MaLR 34 390 0 3 1548 186 43 0 0 chr6 126275733 126275756 -23241281 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1548 189 0 0 0 chr6 126276489 126276510 -23240527 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1548 189 294 140 100 chr6 126277177 126277528 -23239509 - L2c LINE L2 -1 3386 3022 3 1548 367 290 11 0 chr6 126277549 126277642 -23239395 + ORR1E LTR MaLR 3 96 -263 3 1548 279 173 0 0 chr6 126279676 126279728 -23237309 + GA-rich Low_complexity Low_complexity 4 55 0 3 1548 34 0 0 0 chr6 126279734 126279768 -23237269 + AT_rich Low_complexity Low_complexity 1 34 0 3 1548 213 273 47 66 chr6 126280634 126280740 -23236297 + L2 LINE L2 2676 2779 -640 4 1548 207 0 0 0 chr6 126281482 126281505 -23235532 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1548 5969 46 6 0 chr6 126282518 126283230 -23233807 + L1_Mus1 LINE L1 5850 6565 -2 4 1548 504 0 0 0 chr6 126283444 126283500 -23233537 + (CCA)n Simple_repeat Simple_repeat 3 58 0 4 1548 252 297 26 43 chr6 126284653 126284769 -23232268 - MIRc SINE MIR -38 230 117 4 1548 592 284 0 0 chr6 126284813 126284954 -23232083 + B1F SINE Alu 1 141 -8 4 1548 331 302 105 55 chr6 126285592 126285792 -23231245 - ORR1E LTR MaLR -128 231 22 4 1548 1199 288 108 63 chr6 126287655 126288322 -23228715 - Lx8 LINE L1 -41 7432 6736 4 1548 564 15 0 0 chr6 126288656 126288721 -23228316 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1548 284 0 28 0 chr6 126289771 126289807 -23227230 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 1548 423 0 0 0 chr6 126290735 126290782 -23226255 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1548 200 143 29 0 chr6 126290830 126290865 -23226172 + (TTA)n Simple_repeat Simple_repeat 3 38 0 4 1548 866 257 57 0 chr6 126290869 126291079 -23225958 - B4A SINE B4 -69 223 2 4 1548 795 299 84 32 chr6 126293480 126293791 -23223246 + MLT1A0 LTR MaLR 13 339 -26 4 1548 429 109 0 0 chr6 126294637 126294701 -23222336 + (TC)n Simple_repeat Simple_repeat 1 64 0 4 1548 426 20 0 0 chr6 126294701 126294752 -23222285 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1548 857 312 57 34 chr6 126294752 126295014 -23222023 - B4 SINE B4 -23 269 2 4 1548 234 216 0 0 chr6 126296701 126296775 -23220262 + GA-rich Low_complexity Low_complexity 1 74 0 4 1548 192 391 94 12 chr6 126297562 126297733 -23219304 - MIRb SINE MIR -19 249 65 4 1548 438 20 0 0 chr6 126298088 126298139 -23218898 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 4 1548 824 159 23 0 chr6 126298139 126298315 -23218722 + GA-rich Low_complexity Low_complexity 1 180 0 4 1548 247 342 25 17 chr6 126298928 126299047 -23217990 - LTR16E2 LTR ERVL -27 541 422 4 1548 581 100 0 11 chr6 126299408 126299499 -23217538 + (GGA)n Simple_repeat Simple_repeat 3 92 0 4 1548 992 24 8 0 chr6 126299507 126299630 -23217407 + (GAA)n Simple_repeat Simple_repeat 3 126 0 4 1548 731 217 121 1 chr6 126301036 126301275 -23215762 + L1MA4A LINE L1 5637 5906 -1567 4 1548 208 83 125 0 chr6 126301372 126301420 -23215617 + GA-rich Low_complexity Low_complexity 4 57 0 4 1548 362 352 8 16 chr6 126301521 126301645 -23215392 + MER2 DNA MER2_type 223 345 0 4 1548 969 313 147 15 chr6 126301794 126302251 -23214786 - MER74A LTR ERVL -40 518 2 4 1548 219 36 0 0 chr6 126303262 126303290 -23213747 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1548 522 0 0 0 chr6 126303821 126303879 -23213158 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1548 1027 241 162 12 chr6 126305562 126305882 -23211155 + ORR1D2 LTR MaLR 1 368 -2 4 1548 4624 234 102 31 chr6 126305884 126307164 -23209873 + ORR1D2-int LTR MaLR 1 1370 0 4 1548 1069 213 171 19 chr6 126307164 126307485 -23209552 + ORR1D2 LTR MaLR 1 370 0 4 1548 1234 214 127 50 chr6 126309306 126309645 -23207392 + ORR1D2 LTR MaLR 1 365 -5 4 1548 423 0 0 0 chr6 126309646 126309693 -23207344 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1548 2317 153 35 20 chr6 126311112 126311513 -23205524 - MTB_Mm LTR MaLR 0 407 1 4 1548 467 325 7 26 chr6 126312058 126312213 -23204824 + MIRc SINE MIR 113 264 -4 4 1548 342 0 0 0 chr6 126312883 126312921 -23204116 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1548 252 175 0 0 chr6 126312963 126313026 -23204011 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 4 1548 219 152 0 0 chr6 126313039 126313085 -23203952 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1548 189 326 0 0 chr6 126314121 126314170 -23202867 + MIRm SINE MIR 212 260 -16 4 1548 702 125 0 0 chr6 126314393 126314505 -23202532 + (CTCA)n Simple_repeat Simple_repeat 1 112 0 4 1548 216 0 0 0 chr6 126316660 126316684 -23200353 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1548 209 290 0 42 chr6 126317597 126317669 -23199368 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 4 1548 243 44 67 0 chr6 126317681 126317726 -23199311 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1548 555 337 52 71 chr6 126319010 126319374 -23197663 - ORR1E LTR MaLR 0 359 3 4 1548 21 0 0 0 chr6 126319920 126319941 -23197096 + GC_rich Low_complexity Low_complexity 1 21 0 4 1548 269 233 241 0 chr6 126320493 126320609 -23196428 + B1F1 SINE Alu 4 147 -2 4 1548 182 143 0 20 chr6 126320683 126320702 -23196335 + (CCA)n Simple_repeat Simple_repeat 3 21 0 4 1548 459 0 0 0 chr6 126320702 126320753 -23196284 + (TCC)n Simple_repeat Simple_repeat 2 52 0 4 1548 182 143 0 20 chr6 126320753 126320768 -23196269 + (CCA)n Simple_repeat Simple_repeat 1 14 0 4 1548 186 43 0 0 chr6 126320768 126320791 -23196246 + (CAG)n Simple_repeat Simple_repeat 1 23 0 4 1548 182 143 0 20 chr6 126320791 126320805 -23196232 + (CCA)n Simple_repeat Simple_repeat 2 15 0 4 1548 279 0 0 0 chr6 126322131 126322162 -23194875 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1548 207 0 0 0 chr6 126322300 126322323 -23194714 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1548 237 159 0 0 chr6 126322323 126322367 -23194670 + (ATG)n Simple_repeat Simple_repeat 1 44 0 4 1548 381 43 0 0 chr6 126322370 126322417 -23194620 + (GGA)n Simple_repeat Simple_repeat 2 48 0 4 1548 1999 46 4 15 chr6 126323660 126323924 -23193113 - RLTR31B_Mm LTR ERVK -296 261 1 4 1548 317 316 41 0 chr6 126323943 126324041 -23192996 + PB1D10 SINE Alu 6 107 -10 4 1548 878 262 94 12 chr6 126324062 126324390 -23192647 + ERVL-B4-int LTR ERVL 1004 1358 -4356 4 1548 239 321 83 0 chr6 126324398 126324482 -23192555 - MTEb LTR MaLR -1 378 288 4 1548 492 18 0 0 chr6 126325883 126325940 -23191097 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1548 276 30 0 0 chr6 126325940 126325972 -23191065 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1548 252 0 0 0 chr6 126326012 126326040 -23190997 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1548 1735 65 4 29 chr6 126326847 126327086 -23189951 - L1_Mus2 LINE L1 0 6566 6334 4 1548 200 290 96 11 chr6 126329037 126329131 -23187906 + L3b LINE CR1 187 288 -194 4 1548 242 239 29 29 chr6 126329971 126330040 -23186997 + GA-rich Low_complexity Low_complexity 3 71 0 4 1548 504 301 43 65 chr6 126330452 126330637 -23186400 - B3A SINE B2 -11 187 7 4 1548 445 291 137 5 chr6 126330917 126331107 -23185930 + B4 SINE B4 1 215 -77 4 1548 612 336 41 29 chr6 126331161 126331403 -23185634 + MT2A LTR ERVL 188 432 -101 4 1548 707 202 12 0 chr6 126331478 126331641 -23185396 + (CATATA)n Simple_repeat Simple_repeat 2 166 0 4 1548 189 147 0 0 chr6 126333152 126333186 -23183851 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 4 1548 322 308 0 63 chr6 126333186 126333297 -23183740 - B4 SINE B4 -77 215 112 4 1548 354 356 15 8 chr6 126333422 126333552 -23183485 + RSINE1 SINE B4 22 152 -13 4 1548 420 20 0 0 chr6 126333576 126333625 -23183412 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1548 974 152 17 0 chr6 126333627 126333977 -23183060 + GA-rich Low_complexity Low_complexity 1 356 0 4 1548 219 139 0 0 chr6 126333971 126334007 -23183030 + (GGGAA)n Simple_repeat Simple_repeat 1 36 0 4 1548 24 0 0 0 chr6 126334081 126334105 -23182932 + AT_rich Low_complexity Low_complexity 1 24 0 4 1548 412 258 170 13 chr6 126334223 126334376 -23182661 - MER5A DNA MER1_type -3 186 10 4 1548 377 220 49 20 chr6 126335131 126335233 -23181804 + B3 SINE B2 3 107 -109 4 1548 225 204 35 28 chr6 126336715 126336856 -23180181 + CT-rich Low_complexity Low_complexity 1 142 0 4 1548 848 106 0 29 chr6 126337012 126337148 -23179889 - B1_Mus1 SINE Alu -10 138 7 4 1548 330 216 26 121 chr6 126337046 126337162 -23179875 - MT2B LTR ERVL -337 264 160 4 1548 578 307 70 0 chr6 126337902 126338130 -23178907 + B4A SINE B4 45 288 -4 4 1548 192 200 13 26 chr6 126338136 126338213 -23178824 + (CATA)n Simple_repeat Simple_repeat 3 78 0 4 1548 342 0 0 0 chr6 126338220 126338258 -23178779 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1548 354 45 0 0 chr6 126338885 126338929 -23178108 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1548 284 350 8 8 chr6 126340303 126340424 -23176613 + (CA)n Simple_repeat Simple_repeat 2 122 0 4 1548 269 82 20 0 chr6 126340728 126340777 -23176260 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 4 1548 1323 272 50 69 chr6 126341638 126342293 -23174744 + L1MB3 LINE L1 5508 6150 -33 4 1548 274 307 13 0 chr6 126342826 126342901 -23174136 - MTE2b LTR MaLR -13 366 291 4 1548 23 54 0 0 chr6 126343136 126343173 -23173864 + AT_rich Low_complexity Low_complexity 1 37 0 4 1548 1411 187 65 73 chr6 126343271 126343640 -23173397 + ORR1B1 LTR MaLR 20 385 -9 4 1548 495 0 0 0 chr6 126343856 126343911 -23173126 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1548 527 96 12 0 chr6 126343914 126343997 -23173040 + (GA)n Simple_repeat Simple_repeat 2 85 0 4 1548 545 292 158 0 chr6 126344698 126344869 -23172168 + B3 SINE B2 8 205 -11 4 1548 263 262 135 10 chr6 126345997 126346101 -23170936 - L2a LINE L2 -13 3413 3297 4 1548 307 307 136 14 chr6 126346308 126346529 -23170508 - MIRc SINE MIR -4 264 17 4 1548 267 267 16 94 chr6 126347311 126347439 -23169598 + L2a LINE L2 3309 3426 0 4 1548 1049 228 40 54 chr6 126347609 126347887 -23169150 - ORR1D1 LTR MaLR 0 374 101 4 1548 793 185 333 31 chr6 126348186 126348504 -23168533 - MTD LTR MaLR -5 414 1 4 1548 194 350 117 0 chr6 126349204 126349324 -23167713 + MIR SINE MIR 125 258 -4 4 1548 385 82 0 0 chr6 126350287 126350336 -23166701 + (TCTCCC)n Simple_repeat Simple_repeat 1 49 0 5 1548 525 71 0 0 chr6 126350336 126350406 -23166631 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 5 1548 370 343 13 53 chr6 126350419 126350570 -23166467 - B4 SINE B4 -141 151 7 5 1548 216 341 87 0 chr6 126350635 126350773 -23166264 + L2a LINE L2 3272 3421 -5 5 1548 1658 317 109 17 chr6 126351118 126352487 -23164550 + L1MD LINE L1 3777 5301 -845 5 1548 394 342 107 57 chr6 126352459 126352638 -23164399 + L1M5 LINE L1 5274 5472 -707 5 1548 363 73 0 0 chr6 126352638 126352693 -23164344 + (TTTG)n Simple_repeat Simple_repeat 1 55 0 5 1548 853 143 53 0 chr6 126352694 126352827 -23164210 - B1_Mur2 SINE Alu -9 140 1 5 1548 394 342 107 57 chr6 126352827 126353030 -23164007 + L1M5 LINE L1 5473 5677 -502 5 1549 715 297 25 55 chr6 126359318 126359592 -23157445 + ORR1E LTR MaLR 94 359 0 5 1549 239 258 70 30 chr6 126360494 126360594 -23156443 + MIR3 SINE MIR 74 177 -31 5 1549 308 293 0 29 chr6 126360789 126360891 -23156146 + GA-rich Low_complexity Low_complexity 1 99 0 5 1549 192 250 0 0 chr6 126361093 126361133 -23155904 - MIR SINE MIR -118 144 105 5 1549 235 314 48 10 chr6 126361284 126361387 -23155650 - L3b LINE CR1 -191 291 185 5 1549 36342 63 3 3 chr6 126361978 126368249 -23148788 - L1Md_F2 LINE L1 -1 6584 218 5 1549 320 261 50 50 chr6 126368412 126368542 -23148495 + B4 SINE B4 1 141 -83 5 1549 396 0 0 0 chr6 126368715 126368759 -23148278 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1549 1200 111 0 0 chr6 126369150 126369330 -23147707 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 5 1549 678 267 163 73 chr6 126369425 126369946 -23147091 + L1MB7 LINE L1 5617 6184 0 5 1549 219 200 0 43 chr6 126370271 126370318 -23146719 + (CATG)n Simple_repeat Simple_repeat 2 46 0 5 1549 462 18 0 0 chr6 126371040 126371095 -23145942 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1549 266 305 80 44 chr6 126372095 126372232 -23144805 + ORR1D2 LTR MaLR 1 142 -228 5 1549 2728 283 54 55 chr6 126373655 126373772 -23143265 - Lx9 LINE L1 -16 7628 7513 5 1549 897 81 0 0 chr6 126373772 126373895 -23143142 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 5 1549 2728 283 54 55 chr6 126373895 126374060 -23142977 - Lx9 LINE L1 -132 7512 7355 5 1549 492 18 0 0 chr6 126374060 126374117 -23142920 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1549 2728 283 54 55 chr6 126374117 126374585 -23142452 - Lx9 LINE L1 -290 7354 6894 5 1549 4015 151 88 7 chr6 126374585 126375267 -23141770 - RMER19A LTR ERVK 0 737 1 5 1549 2728 268 124 54 chr6 126375267 126375744 -23141293 - Lx9 LINE L1 -751 6893 6367 5 1549 4682 189 68 38 chr6 126375766 126377007 -23140030 - RMER12 LTR ERVK -38 1810 15 5 1549 229 197 101 142 chr6 126377048 126377196 -23139841 - Lx9 LINE L1 -1364 6280 6139 5 1549 248 151 18 70 chr6 126377350 126377407 -23139630 + L1_Rod LINE L1 5769 5822 -25 5 1549 419 339 60 63 chr6 126377967 126378285 -23138752 + ORR1E LTR MaLR 33 349 -10 5 1549 978 106 6 36 chr6 126378318 126378485 -23138552 + URR1A DNA MER1_type 59 220 -6 5 1549 417 54 0 0 chr6 126379182 126379238 -23137799 + (TATG)n Simple_repeat Simple_repeat 4 59 0 5 1549 252 0 0 0 chr6 126379457 126379485 -23137552 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1549 334 367 40 29 chr6 126379499 126379777 -23137260 + Arthur1B DNA Tip100 535 815 -410 5 1549 411 21 0 0 chr6 126379952 126380000 -23137037 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1549 425 246 114 8 chr6 126380000 126380123 -23136914 - B3 SINE B2 -80 136 1 5 1549 222 150 0 0 chr6 126380222 126380262 -23136775 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1549 417 222 16 19 chr6 126380535 126380800 -23136237 + CT-rich Low_complexity Low_complexity 1 263 0 5 1549 188 354 116 18 chr6 126380955 126381119 -23135918 - MIR3 SINE MIR -21 187 8 5 1549 1236 227 11 120 chr6 126381295 126381671 -23135366 + MTD LTR MaLR 46 380 -39 5 1549 1687 131 192 17 chr6 126381672 126381855 -23135182 - RMER17C LTR ERVK 0 410 225 5 1549 765 82 0 0 chr6 126381855 126381965 -23135072 + (GA)n Simple_repeat Simple_repeat 2 111 0 5 1549 1687 131 192 17 chr6 126381965 126381986 -23135051 - RMER17C LTR ERVK -186 224 184 5 1549 1347 63 0 0 chr6 126381986 126382192 -23134845 + (GAA)n Simple_repeat Simple_repeat 1 206 0 5 1549 1687 131 192 17 chr6 126382192 126382334 -23134703 - RMER17C LTR ERVK -227 183 2 5 1549 4762 137 26 4 chr6 126385874 126386605 -23130432 - Lx4A LINE L1 -3 7055 6309 5 1549 275 300 101 34 chr6 126386648 126386855 -23130182 + MER113 DNA MER1_type 238 458 -63 5 1549 225 365 21 28 chr6 126386945 126387086 -23129951 + MIR3 SINE MIR 48 187 -21 5 1549 3842 142 98 13 chr6 126387219 126387916 -23129121 - RMER6A LTR ERVK 0 756 1 5 1549 26 30 0 0 chr6 126388953 126388986 -23128051 + AT_rich Low_complexity Low_complexity 1 33 0 5 1549 362 359 14 0 chr6 126389130 126389275 -23127762 + RSINE1 SINE B4 3 149 -16 5 1549 441 0 0 0 chr6 126389280 126389329 -23127708 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1549 231 61 0 0 chr6 126389404 126389437 -23127600 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 5 1549 261 250 37 24 chr6 126390667 126390749 -23126288 - MER121 Unknown Unknown -166 246 164 5 1549 200 200 0 20 chr6 126391335 126391386 -23125651 + CT-rich Low_complexity Low_complexity 3 52 0 5 1549 3018 67 18 3 chr6 126391450 126391840 -23125197 - MTA_Mm LTR MaLR 0 396 1 5 1549 505 216 10 0 chr6 126392666 126392768 -23124269 + MTEa LTR MaLR 1 103 -276 5 1549 460 269 108 58 chr6 126392951 126393192 -23123845 + MT2B LTR ERVL 347 599 -2 5 1549 243 372 0 0 chr6 126394342 126394428 -23122609 + L1MC LINE L1 5555 5640 -2242 5 1549 317 229 13 35 chr6 126394432 126394595 -23122442 + L1M5 LINE L1 5672 5835 -338 5 1549 282 220 390 0 chr6 126394645 126394781 -23122256 + Lx8 LINE L1 7148 7336 -137 5 1549 288 182 85 61 chr6 126395224 126395306 -23121731 - PB1 SINE Alu -7 120 37 5 1549 462 75 0 0 chr6 126395848 126395915 -23121122 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 5 1549 899 258 11 46 chr6 126395915 126396175 -23120862 - Lx5 LINE L1 -9 7041 6791 5 1549 5863 126 42 9 chr6 126396215 126397139 -23119898 + RMER17B LTR ERVK 4 958 0 5 1549 402 315 130 0 chr6 126397139 126397285 -23119752 - B3A SINE B2 -26 172 8 5 1549 498 308 0 0 chr6 126397287 126397420 -23119617 - B1F SINE Alu -14 135 3 5 1549 232 250 62 10 chr6 126397430 126397527 -23119510 - L1MC4 LINE L1 -799 7243 7142 5 1549 186 128 0 0 chr6 126397718 126397757 -23119280 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 5 1549 216 366 0 0 chr6 126397785 126397856 -23119181 + BC1_Mm scRNA scRNA 18 88 -64 5 1549 897 236 18 50 chr6 126397878 126398097 -23118940 + B3 SINE B2 5 216 0 5 1549 847 78 26 0 chr6 126398112 126398227 -23118810 - Lx LINE L1 -732 5922 5805 5 1549 4520 105 47 9 chr6 126398228 126398809 -23118228 + Lx LINE L1 5939 6518 -136 5 1549 384 22 0 0 chr6 126398809 126398854 -23118183 + (TAGG)n Simple_repeat Simple_repeat 4 48 0 5 1549 4520 105 47 9 chr6 126398854 126398953 -23118084 + Lx LINE L1 6519 6644 -10 5 1549 198 91 0 0 chr6 126399956 126399989 -23117048 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1549 373 181 11 38 chr6 126400029 126400213 -23116824 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 5 1549 186 43 0 0 chr6 126400227 126400250 -23116787 + (CG)n Simple_repeat Simple_repeat 1 23 0 5 1549 674 62 10 0 chr6 126400250 126400345 -23116692 + (TG)n Simple_repeat Simple_repeat 1 97 0 5 1549 284 214 11 53 chr6 126400417 126400511 -23116526 + MLT1A1 LTR MaLR 314 403 -5 5 1549 189 0 0 0 chr6 126400924 126400945 -23116092 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 5 1549 283 243 112 43 chr6 126402504 126402620 -23114417 - MIRb SINE MIR -12 256 133 5 1549 272 179 0 0 chr6 126403173 126403229 -23113808 + MER2 DNA MER2_type 152 207 -138 5 1549 369 62 0 0 chr6 126404203 126404251 -23112786 + (TCTG)n Simple_repeat Simple_repeat 2 49 0 5 1549 708 12 0 0 chr6 126404252 126404333 -23112704 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1549 369 0 0 0 chr6 126404778 126404819 -23112218 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1549 324 0 0 0 chr6 126404819 126404854 -23112183 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1549 29 28 0 0 chr6 126404856 126404892 -23112145 + AT_rich Low_complexity Low_complexity 1 36 0 5 1549 250 318 0 16 chr6 126405732 126405860 -23111177 + L1MA5 LINE L1 6154 6279 -21 5 1549 36027 36 0 0 chr6 126405894 126411770 -23105267 + L1Md_T LINE L1 1 5589 -297 5 1549 9159 6 0 0 chr6 126411770 126412766 -23104271 + L1Md_T LINE L1 5590 6585 0 5 1549 642 93 0 0 chr6 126413152 126413260 -23103777 + (CA)n Simple_repeat Simple_repeat 2 109 0 5 1549 293 303 0 110 chr6 126413999 126414099 -23102938 - PB1D10 SINE Alu -27 90 2 5 1549 692 282 19 45 chr6 126414418 126414725 -23102312 - RLTR11A LTR ERVK -164 289 1 5 1549 2976 60 57 5 chr6 126415113 126415498 -23101539 - MTB_Mm LTR MaLR -2 405 1 5 1549 2481 150 82 2 chr6 126416724 126417197 -23099840 - RMER5 LTR ERV1 -11 523 13 5 1549 1314 294 72 45 chr6 126417505 126418035 -23099002 + Lx8 LINE L1 6922 7465 -8 5 1549 21 0 0 0 chr6 126418064 126418085 -23098952 + AT_rich Low_complexity Low_complexity 1 21 0 5 1549 5506 69 11 4 chr6 126418338 126419051 -23097986 + L1Md_F2 LINE L1 5850 6567 -15 5 1549 26 30 0 0 chr6 126419051 126419084 -23097953 + AT_rich Low_complexity Low_complexity 1 33 0 5 1549 3684 56 0 0 chr6 126419192 126419635 -23097402 + L1_Mus1 LINE L1 5783 6225 -342 5 1549 681 101 0 0 chr6 126420120 126420219 -23096818 + (GA)n Simple_repeat Simple_repeat 2 100 0 5 1549 1122 219 50 29 chr6 126421241 126421330 -23095707 + MTD LTR MaLR 24 113 -306 5 1549 546 57 0 0 chr6 126421330 126421400 -23095637 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 5 1549 1122 219 50 29 chr6 126421400 126421588 -23095449 + MTD LTR MaLR 114 307 -112 5 1549 433 292 19 0 chr6 126421562 126421668 -23095369 + B3A SINE B2 55 162 -36 5 1549 447 19 0 0 chr6 126421731 126421783 -23095254 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1549 2653 179 67 34 chr6 126421794 126422348 -23094689 + RMER15 LTR ERVL 2 573 -2 5 1549 489 47 0 0 chr6 126422350 126422414 -23094623 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1549 429 309 82 49 chr6 126422425 126422529 -23094508 - B4 SINE B4 -101 191 86 6 1549 309 26 0 0 chr6 126422529 126422567 -23094470 + (TTG)n Simple_repeat Simple_repeat 3 40 0 6 1549 429 309 82 49 chr6 126422567 126422646 -23094391 - B4 SINE B4 -207 85 2 6 1549 486 0 0 0 chr6 126422823 126422877 -23094160 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1549 646 219 76 13 chr6 126423068 126423225 -23093812 + B3 SINE B2 1 167 -49 6 1549 661 313 53 65 chr6 126423417 126423738 -23093299 - RMER21B LTR ERV1 -278 564 248 6 1549 203 254 16 16 chr6 126423847 126423911 -23093126 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1549 297 363 9 0 chr6 126423936 126424049 -23092988 - B4 SINE B4 -12 280 167 6 1549 922 234 0 0 chr6 126424045 126424229 -23092808 + B3 SINE B2 33 216 0 6 1549 276 364 67 56 chr6 126424534 126424700 -23092337 + B4A SINE B4 5 167 -125 6 1549 594 0 0 0 chr6 126424700 126424766 -23092271 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 6 1549 276 364 67 56 chr6 126424766 126424884 -23092153 + B4A SINE B4 168 291 -1 6 1549 396 0 0 0 chr6 126425000 126425044 -23091993 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 6 1549 1128 77 14 0 chr6 126425044 126425187 -23091850 - B1_Mus1 SINE Alu -3 145 1 6 1549 978 34 0 0 chr6 126425221 126425339 -23091698 + (TCTCCC)n Simple_repeat Simple_repeat 4 121 0 6 1549 415 209 0 0 chr6 126425339 126425430 -23091607 + (TG)n Simple_repeat Simple_repeat 1 91 0 6 1549 439 153 48 12 chr6 126425438 126425603 -23091434 + (TCTG)n Simple_repeat Simple_repeat 4 174 0 6 1549 467 17 17 0 chr6 126426366 126426426 -23090611 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1549 286 206 103 0 chr6 126426751 126426819 -23090218 + B4 SINE B4 103 177 -115 6 1549 247 255 0 18 chr6 126426834 126426890 -23090147 + GA-rich Low_complexity Low_complexity 4 58 0 6 1549 907 183 4 16 chr6 126427094 126427339 -23089698 + CT-rich Low_complexity Low_complexity 1 242 0 6 1549 395 287 85 18 chr6 126428306 126428606 -23088431 + MTD LTR MaLR 68 417 -2 6 1549 1031 196 51 14 chr6 126428852 126429069 -23087968 - URR1A DNA MER1_type 0 226 2 6 1549 302 230 54 0 chr6 126429716 126429790 -23087247 - B4 SINE B4 -77 215 138 6 1549 357 174 0 0 chr6 126430010 126430079 -23086958 + GA-rich Low_complexity Low_complexity 4 72 0 6 1549 210 286 78 0 chr6 126431757 126431834 -23085203 - MIRb SINE MIR -74 194 112 6 1549 1066 269 163 30 chr6 126432141 126432489 -23084548 + Lx8 LINE L1 6944 7342 -131 6 1549 450 36 0 0 chr6 126432489 126432545 -23084492 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1549 198 0 0 0 chr6 126432545 126432566 -23084471 + (CG)n Simple_repeat Simple_repeat 1 22 0 6 1549 1066 269 163 30 chr6 126432566 126432676 -23084361 + Lx8 LINE L1 7343 7463 -10 6 1549 852 20 0 0 chr6 126432827 126432929 -23084108 + (GA)n Simple_repeat Simple_repeat 1 102 0 6 1549 240 318 61 0 chr6 126433839 126433971 -23083066 - MIRb SINE MIR -28 240 101 6 1549 477 0 0 0 chr6 126434260 126434313 -23082724 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1549 712 169 11 0 chr6 126435344 126435522 -23081515 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1549 386 168 49 42 chr6 126435527 126435670 -23081367 + (CATA)n Simple_repeat Simple_repeat 4 147 0 6 1549 226 0 29 29 chr6 126436298 126436333 -23080704 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 6 1549 1092 90 0 40 chr6 126436362 126436513 -23080524 - B1_Mus2 SINE Alu -1 146 2 6 1549 234 0 0 0 chr6 126436522 126436548 -23080489 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1549 1238 173 63 84 chr6 126438800 126439147 -23077890 - RLTR15 LTR ERVK -19 340 1 6 1549 362 242 152 40 chr6 126439201 126439399 -23077638 - L1MA6 LINE L1 -5 6295 6076 6 1549 539 254 97 51 chr6 126439406 126439601 -23077436 + ORR1E LTR MaLR 1 204 -155 6 1549 265 146 76 19 chr6 126439601 126439706 -23077331 + (TCTCTG)n Simple_repeat Simple_repeat 2 112 0 6 1549 331 265 45 91 chr6 126439715 126439914 -23077123 + ORR1E LTR MaLR 158 347 -12 6 1549 406 278 26 0 chr6 126440302 126440417 -23076620 - B1F SINE Alu -8 141 24 6 1549 696 294 182 20 chr6 126440436 126440832 -23076205 - L1MA6 LINE L1 -510 5781 5322 6 1549 2401 299 60 34 chr6 126440835 126441746 -23075291 - Lx8 LINE L1 0 7473 6539 6 1549 637 280 67 40 chr6 126441742 126441924 -23075113 + Lx8 LINE L1 6299 6557 -1087 6 1549 1440 213 160 96 chr6 126441924 126441978 -23075059 - MT2A LTR ERVL -2 531 478 6 1549 475 43 14 14 chr6 126441978 126442049 -23074988 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 6 1549 1440 213 160 96 chr6 126442049 126442062 -23074975 - MT2A LTR ERVL -56 477 460 6 1549 560 27 14 0 chr6 126442062 126442136 -23074901 + (CATATA)n Simple_repeat Simple_repeat 4 78 0 6 1549 1440 213 160 96 chr6 126442136 126442566 -23074471 - MT2A LTR ERVL -74 459 3 6 1549 637 276 75 42 chr6 126442566 126442619 -23074418 + Lx8 LINE L1 6457 6517 -956 6 1549 314 276 22 125 chr6 126442636 126442868 -23074169 - L1MA6 LINE L1 -837 5306 5099 6 1549 714 276 77 52 chr6 126442903 126443346 -23073691 - L1MA6 LINE L1 -2688 3455 3002 6 1549 479 293 95 24 chr6 126443707 126443833 -23073204 - RSINE1 SINE B4 -17 148 14 6 1549 495 0 0 0 chr6 126443848 126443903 -23073134 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1549 569 250 52 29 chr6 126443918 126444054 -23072983 - RSINE1 SINE B4 -24 141 3 6 1549 659 279 103 11 chr6 126444299 126444560 -23072477 + L1MD3 LINE L1 7543 7827 -168 6 1549 31 0 0 0 chr6 126444654 126444685 -23072352 + AT_rich Low_complexity Low_complexity 1 31 0 6 1549 826 272 26 26 chr6 126444873 126445103 -23071934 + B4A SINE B4 8 237 -55 6 1549 549 0 0 0 chr6 126445208 126445269 -23071768 + (TC)n Simple_repeat Simple_repeat 1 61 0 6 1549 474 18 0 0 chr6 126445269 126445324 -23071713 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1549 2319 144 81 5 chr6 126445340 126445724 -23071313 - MTC LTR MaLR -8 413 1 6 1549 989 203 6 6 chr6 126448150 126448333 -23068704 - URR1B DNA MER1_type -42 183 1 6 1549 352 266 85 39 chr6 126450047 126450176 -23066861 + B1_Mur3 SINE Alu 8 142 -7 6 1549 280 313 105 15 chr6 126450910 126451043 -23065994 + Charlie12 DNA MER1_type 31 175 -2698 6 1549 594 241 7 74 chr6 126451045 126451193 -23065844 - B3A SINE B2 -16 182 45 6 1549 351 0 0 0 chr6 126452019 126452058 -23064979 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1549 1280 160 153 22 chr6 126452254 126452370 -23064667 + ORR1C2 LTR MaLR 3 171 -213 6 1549 804 39 0 0 chr6 126452370 126452474 -23064563 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 1549 1280 137 158 20 chr6 126452474 126452650 -23064387 + ORR1C2 LTR MaLR 172 383 -1 6 1549 23 0 0 0 chr6 126453479 126453502 -23063535 + AT_rich Low_complexity Low_complexity 1 23 0 6 1549 4224 178 75 16 chr6 126454622 126455434 -23061603 + RMER13A LTR ERVK 1 860 0 6 1549 216 0 0 0 chr6 126455824 126455848 -23061189 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1549 186 71 0 0 chr6 126456007 126456035 -23061002 + (TAG)n Simple_repeat Simple_repeat 3 30 0 6 1549 257 321 88 99 chr6 126456789 126457062 -23059975 - ORR1E LTR MaLR -10 349 80 6 1549 197 271 32 151 chr6 126457201 126457255 -23059782 - MER5A DNA MER1_type 0 189 140 6 1549 1075 186 72 0 chr6 126457255 126457449 -23059588 - B3 SINE B2 -6 210 3 6 1549 197 271 32 151 chr6 126457449 126457520 -23059517 - MER5A DNA MER1_type -50 139 79 6 1549 1619 120 39 80 chr6 126457540 126457876 -23059161 + RLTRETN_Mm LTR ERVK 1 322 0 6 1549 186 133 0 0 chr6 126457895 126457925 -23059112 + (TCTCCC)n Simple_repeat Simple_repeat 4 33 0 6 1549 279 0 0 0 chr6 126458041 126458072 -23058965 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1549 425 273 47 8 chr6 126458155 126458284 -23058753 - MER5A1 DNA MER1_type 0 166 33 6 1549 284 289 0 32 chr6 126458388 126458399 -23058638 - BC1_Mm scRNA scRNA -61 91 2 6 1549 334 281 12 0 chr6 126458399 126458481 -23058556 - ID SINE ID -140 84 2 6 1549 996 252 19 0 chr6 126461088 126461294 -23055743 - ID_B1 SINE B4 -13 211 2 6 1549 1012 130 17 8 chr6 126462545 126463018 -23054019 + (TATG)n Simple_repeat Simple_repeat 1 477 0 6 1549 328 311 0 43 chr6 126463591 126463729 -23053308 + CT-rich Low_complexity Low_complexity 3 134 0 6 1549 239 344 32 0 chr6 126464114 126464207 -23052830 - RMER5 LTR ERV1 -4 530 435 6 1549 360 0 0 0 chr6 126465364 126465404 -23051633 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1549 5402 50 1 1 chr6 126466574 126467237 -23049800 + L1Md_F2 LINE L1 5920 6582 0 6 1549 1319 258 89 16 chr6 126467538 126467920 -23049117 + MTD LTR MaLR 10 419 0 6 1549 336 268 137 91 chr6 126467923 126468120 -23048917 - MLT1J2 LTR MaLR -204 244 39 6 1549 430 250 0 72 chr6 126468703 126468828 -23048209 + PB1D10 SINE Alu 2 117 0 6 1549 450 94 0 0 chr6 126469311 126469375 -23047662 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1549 260 62 0 0 chr6 126469375 126469407 -23047630 + (TCC)n Simple_repeat Simple_repeat 3 34 0 6 1549 826 314 27 103 chr6 126469519 126469927 -23047110 - MTEa LTR MaLR 0 379 3 6 1549 23 0 0 0 chr6 126470029 126470052 -23046985 + AT_rich Low_complexity Low_complexity 1 23 0 6 1549 1155 256 3 28 chr6 126470477 126470763 -23046274 + RMER15 LTR ERVL 294 572 -3 6 1549 489 62 0 0 chr6 126470902 126470967 -23046070 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1549 774 268 78 5 chr6 126471073 126471279 -23045758 + MTEa LTR MaLR 158 378 -1 6 1549 242 344 30 50 chr6 126471357 126471458 -23045579 + MIRc SINE MIR 90 191 -85 6 1549 2525 159 130 86 chr6 126471729 126472314 -23044723 + RMER19C LTR ERVK 1 611 0 6 1549 575 191 173 8 chr6 126472562 126472689 -23044348 + B1_Mus1 SINE Alu 1 148 0 6 1549 219 36 0 0 chr6 126473191 126473219 -23043818 + (TTG)n Simple_repeat Simple_repeat 2 29 0 6 1549 678 85 0 0 chr6 126473301 126473395 -23043642 + (CACAC)n Simple_repeat Simple_repeat 1 94 0 6 1549 576 0 0 0 chr6 126473854 126473918 -23043119 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 6 1549 816 286 77 27 chr6 126474248 126474510 -23042527 - MTD LTR MaLR -144 275 6 6 1549 849 216 13 13 chr6 126475451 126475610 -23041427 + B3 SINE B2 1 159 -57 6 1549 724 280 24 24 chr6 126475617 126475866 -23041171 + Lx8 LINE L1 7004 7252 -221 6 1549 297 0 0 0 chr6 126475871 126475904 -23041133 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1549 432 0 0 0 chr6 126475984 126476032 -23041005 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1549 288 0 0 0 chr6 126476866 126476898 -23040139 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 7 1549 180 0 0 0 chr6 126478544 126478564 -23038473 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1549 281 236 179 22 chr6 126478571 126478707 -23038330 + MIRb SINE MIR 30 181 -27 7 1549 611 78 11 0 chr6 126478791 126478881 -23038156 + (TCCC)n Simple_repeat Simple_repeat 3 93 0 7 1549 1252 128 108 0 chr6 126481798 126482002 -23035035 - URR1A DNA MER1_type 0 226 1 7 1549 1413 208 101 17 chr6 126482040 126482388 -23034649 + Lx5 LINE L1 6655 7031 -19 7 1549 264 122 0 0 chr6 126482388 126482429 -23034608 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 7 1550 201 300 0 0 chr6 126485463 126485523 -23031514 + CT-rich Low_complexity Low_complexity 2 61 0 7 1550 744 202 64 50 chr6 126485819 126486038 -23030999 - URR1A DNA MER1_type 0 226 5 7 1550 423 0 0 0 chr6 126486101 126486148 -23030889 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1550 218 300 48 36 chr6 126486539 126486622 -23030415 - MIR SINE MIR -100 162 79 7 1550 210 319 32 56 chr6 126486608 126486734 -23030303 - MIRb SINE MIR -140 128 6 7 1550 276 302 11 23 chr6 126487346 126487434 -23029603 - ID4 SINE ID -57 95 9 7 1550 300 237 84 21 chr6 126487883 126487978 -23029059 + LTR16B1 LTR ERVL 265 365 -115 7 1550 248 207 19 164 chr6 126488114 126488218 -23028819 - MER5A1 DNA MER1_type -75 91 3 7 1550 314 311 35 64 chr6 126488460 126488601 -23028436 + ID_B1 SINE B4 40 176 -48 7 1550 400 281 0 0 chr6 126488531 126488620 -23028417 + PB1D10 SINE Alu 26 114 -3 7 1550 544 317 0 16 chr6 126488626 126488751 -23028286 + ID_B1 SINE B4 81 203 -21 7 1550 69 41 0 0 chr6 126488766 126488863 -23028174 + AT_rich Low_complexity Low_complexity 1 97 0 7 1550 332 77 19 0 chr6 126490026 126490078 -23026959 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 7 1550 453 36 0 0 chr6 126490129 126490184 -23026853 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1550 309 51 0 0 chr6 126491681 126491720 -23025317 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1550 345 366 16 26 chr6 126492681 126492872 -23024165 + MER5A DNA MER1_type 1 189 0 7 1550 198 0 0 0 chr6 126492896 126492918 -23024119 + (CTGGGG)n Simple_repeat Simple_repeat 6 27 0 7 1550 2083 163 95 0 chr6 126493256 126493624 -23023413 - MTD LTR MaLR 0 419 17 7 1550 441 329 59 55 chr6 126493881 126494100 -23022937 - MLT1D LTR MaLR -285 220 1 7 1550 306 0 0 0 chr6 126494928 126494962 -23022075 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1550 378 0 0 0 chr6 126494962 126495003 -23022034 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1550 721 207 77 87 chr6 126495108 126495304 -23021733 - B3A SINE B2 0 198 5 7 1550 686 318 250 19 chr6 126495475 126496039 -23020998 + MER21B LTR ERV1 19 712 -151 7 1550 180 395 0 32 chr6 126496050 126496173 -23020864 - MIRb SINE MIR -85 183 65 7 1550 636 14 0 0 chr6 126496408 126496481 -23020556 + (TC)n Simple_repeat Simple_repeat 2 74 0 7 1550 271 340 28 4 chr6 126496750 126496876 -23020161 + MIRb SINE MIR 26 150 -58 7 1550 404 265 205 6 chr6 126497240 126497411 -23019626 + B4A SINE B4 2 206 -86 7 1550 230 256 158 0 chr6 126497541 126497623 -23019414 + MER21B LTR ERV1 470 564 -299 7 1550 180 0 0 0 chr6 126498266 126498286 -23018751 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1550 474 313 72 6 chr6 126498910 126499090 -23017947 + MER53 DNA hAT 1 192 -1 7 1550 482 332 88 13 chr6 126501487 126501725 -23015312 - MIR SINE MIR -6 256 1 1 1550 355 243 25 101 chr6 126502455 126502574 -23014463 + PB1 SINE Alu 18 127 0 2 1550 266 257 129 0 chr6 126502578 126502648 -23014389 + ID4_ SINE ID 2 80 -3 3 1550 455 45 15 0 chr6 126505458 126505524 -23011513 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1550 227 288 0 0 chr6 126505729 126505782 -23011255 + PB1D10 SINE Alu 64 124 -3 5 1550 684 24 0 0 chr6 126505782 126505864 -23011173 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 6 1550 504 226 0 0 chr6 126507551 126507644 -23009393 - MIR SINE MIR -130 132 40 7 1550 233 224 0 20 chr6 126507828 126507878 -23009159 + CT-rich Low_complexity Low_complexity 5 53 0 8 1550 3163 113 202 204 chr6 126508286 126509316 -23007721 + RLTR25B LTR ERVK 1 1028 0 9 1550 272 250 31 15 chr6 126509969 126510034 -23007003 - BC1_Mm scRNA scRNA -71 81 16 1 1550 364 311 8 50 chr6 126510418 126510752 -23006285 + GA-rich Low_complexity Low_complexity 1 320 0 1 1550 833 306 32 64 chr6 126511036 126511445 -23005592 + L1MB7 LINE L1 5765 6160 -24 1 1550 653 239 50 28 chr6 126511502 126511616 -23005421 + MTE2a LTR MaLR 192 309 -70 1 1550 275 0 0 28 chr6 126511616 126511652 -23005385 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1550 653 239 50 28 chr6 126511652 126511718 -23005319 + MTE2a LTR MaLR 310 375 -4 1 1550 290 328 40 40 chr6 126511876 126512000 -23005037 + MLT1H2 LTR MaLR 2 125 -364 1 1550 576 65 0 0 chr6 126513206 126513283 -23003754 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1550 279 0 0 0 chr6 126513283 126513313 -23003724 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1550 405 281 117 58 chr6 126513326 126513617 -23003420 - L1M2 LINE L1 -539 5752 5445 1 1550 213 291 88 12 chr6 126513810 126513890 -23003147 + L2a LINE L2 3336 3421 -5 1 1550 281 333 0 37 chr6 126514592 126514701 -23002336 - MIR SINE MIR -123 139 35 2 1550 2035 125 41 16 chr6 126516716 126517034 -23000003 - ORR1A2 LTR MaLR 0 327 2 2 1550 642 298 71 15 chr6 126517051 126517320 -22999717 + B4A SINE B4 1 284 -8 2 1550 307 269 96 51 chr6 126517544 126517709 -22999328 + MLT1A1 LTR MaLR 207 395 -13 2 1550 194 259 108 101 chr6 126519166 126519295 -22997742 + MIRb SINE MIR 26 155 -113 2 1550 297 0 0 0 chr6 126519447 126519480 -22997557 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1550 297 0 0 0 chr6 126519891 126519924 -22997113 + (TGG)n Simple_repeat Simple_repeat 3 35 0 2 1550 186 143 0 0 chr6 126520221 126520256 -22996781 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 2 1550 224 232 130 83 chr6 126521036 126521144 -22995893 - MIRc SINE MIR -108 160 48 2 1550 303 28 0 0 chr6 126524497 126524533 -22992504 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1550 389 259 103 8 chr6 126526783 126526900 -22990137 - MER20 DNA MER1_type -62 157 30 3 1550 327 311 32 8 chr6 126527940 126528063 -22988974 + MER5A1 DNA MER1_type 32 157 -9 3 1550 252 306 59 39 chr6 126529283 126529385 -22987652 + MIRb SINE MIR 144 247 -21 3 1550 707 233 82 29 chr6 126529618 126529826 -22987211 + MTE2b LTR MaLR 154 372 -7 3 1550 258 32 0 0 chr6 126530556 126530587 -22986450 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1550 274 282 47 0 chr6 126531798 126531883 -22985154 - MER91C DNA Tip100 -51 89 1 3 1550 213 379 57 37 chr6 126531906 126532150 -22984887 + L2b LINE L2 3013 3261 -114 3 1550 302 316 0 37 chr6 126532338 126532420 -22984617 + ID_B1 SINE B4 93 171 -53 3 1550 387 0 0 0 chr6 126532425 126532468 -22984569 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1550 207 244 0 0 chr6 126532468 126532513 -22984524 + C-rich Low_complexity Low_complexity 3 47 0 3 1550 591 352 90 63 chr6 126533419 126533977 -22983060 + MER77 LTR ERVL 30 602 -5 4 1550 1321 133 0 0 chr6 126534237 126534432 -22982605 - URR1A DNA MER1_type 0 226 32 4 1550 463 355 51 14 chr6 126534666 126534883 -22982154 - MIR SINE MIR -21 241 17 4 1550 273 29 0 0 chr6 126534889 126534923 -22982114 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1550 253 338 0 0 chr6 126535014 126535094 -22981943 + MADE2 DNA Mariner 1 80 0 4 1550 200 324 13 13 chr6 126535440 126535515 -22981522 + MIRc SINE MIR 47 121 -147 4 1550 228 214 0 0 chr6 126535530 126535572 -22981465 + GA-rich Low_complexity Low_complexity 4 45 0 4 1550 450 36 0 0 chr6 126536254 126536310 -22980727 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1550 230 125 21 0 chr6 126536487 126536535 -22980502 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1550 309 293 195 58 chr6 126536608 126536865 -22980172 + ORR1D2 LTR MaLR 46 337 -33 4 1550 378 0 0 0 chr6 126537870 126537912 -22979125 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1550 1648 132 15 15 chr6 126537913 126538182 -22978855 - Lx LINE L1 -8 6646 6378 5 1550 492 178 82 0 chr6 126538423 126538521 -22978516 + B1F SINE Alu 13 119 -30 5 1550 378 129 0 0 chr6 126538636 126538698 -22978339 + (TGAA)n Simple_repeat Simple_repeat 3 64 0 5 1550 278 324 62 66 chr6 126539605 126539632 -22977405 - MER33 DNA MER1_type -76 248 227 5 1550 540 269 44 7 chr6 126539632 126539767 -22977270 - B1F SINE Alu -8 141 2 5 1550 278 324 62 66 chr6 126539767 126539980 -22977057 - MER33 DNA MER1_type -98 226 9 5 1550 652 313 34 11 chr6 126540234 126540502 -22976535 + B4A SINE B4 4 277 -15 5 1550 213 367 9 35 chr6 126542113 126542226 -22974811 + MIRb SINE MIR 95 204 -64 5 1550 730 346 48 42 chr6 126544284 126544619 -22972418 + MER2 DNA MER2_type 9 345 0 5 1550 205 314 57 41 chr6 126545223 126545346 -22971691 + MIR SINE MIR 22 146 -116 5 1550 483 279 73 80 chr6 126545399 126545687 -22971350 + B4A SINE B4 7 292 0 6 1550 914 290 53 4 chr6 126547010 126547273 -22969764 - B4A SINE B4 -15 277 2 6 1550 562 333 38 26 chr6 126547888 126548153 -22968884 + ORR1E LTR MaLR 58 325 -34 6 1550 244 341 101 112 chr6 126548847 126549204 -22967833 + ORR1E LTR MaLR 5 357 -2 6 1550 192 266 134 10 chr6 126549806 126549889 -22967148 - MIR SINE MIR -167 109 22 6 1550 184 277 85 78 chr6 126550230 126550359 -22966678 + MIR3 SINE MIR 3 132 -76 6 1550 674 345 107 28 chr6 126550667 126550954 -22966083 + MLT1A0 LTR MaLR 39 348 -26 6 1550 185 83 28 0 chr6 126551120 126551156 -22965881 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 6 1550 255 189 0 0 chr6 126552328 126552381 -22964656 + CT-rich Low_complexity Low_complexity 1 53 0 6 1550 789 92 0 0 chr6 126552381 126552501 -22964536 + (TG)n Simple_repeat Simple_repeat 2 121 0 6 1550 246 362 30 97 chr6 126553433 126553525 -22963512 + MIRc SINE MIR 50 131 -137 7 1550 306 0 0 0 chr6 126553525 126553559 -22963478 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1550 246 362 30 97 chr6 126553559 126553631 -22963406 + MIRc SINE MIR 132 203 -65 7 1550 794 211 0 7 chr6 126555411 126555554 -22961483 + B1_Mur1 SINE Alu 5 146 -3 7 1550 3062 47 42 3 chr6 126555939 126556320 -22960717 - MTA_Mm LTR MaLR 0 396 1 7 1550 331 313 58 39 chr6 126556881 126557037 -22960000 - MIRc SINE MIR -55 213 55 7 1550 426 309 53 73 chr6 126558453 126558497 -22958540 - MER20 DNA MER1_type -5 214 179 7 1550 469 256 97 37 chr6 126558497 126558631 -22958406 - B1F SINE Alu -5 144 3 7 1550 426 309 53 73 chr6 126558631 126558792 -22958245 - MER20 DNA MER1_type -41 178 13 7 1550 273 187 0 0 chr6 126561600 126561675 -22955362 + (TCTCTG)n Simple_repeat Simple_repeat 3 77 0 7 1550 847 192 7 0 chr6 126562244 126562390 -22954647 + B1_Mus2 SINE Alu 1 147 0 7 1550 704 222 27 34 chr6 126562494 126562507 -22954530 - B1_Mur2 SINE Alu 0 149 137 7 1550 258 32 0 0 chr6 126562507 126562538 -22954499 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 8 1550 704 222 27 34 chr6 126562538 126562673 -22954364 - B1_Mur2 SINE Alu -13 136 2 7 1550 530 306 169 14 chr6 126562696 126563051 -22953986 + L1MA6 LINE L1 5814 6223 -77 8 1550 869 179 218 21 chr6 126564249 126564437 -22952600 - URR1B DNA MER1_type 0 225 1 8 1550 427 98 0 26 chr6 126564455 126564532 -22952505 + ORR1C2 LTR MaLR 301 382 -2 8 1550 324 0 0 0 chr6 126564536 126564572 -22952465 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1550 729 172 0 0 chr6 126564609 126564725 -22952312 - B3 SINE B2 -100 116 1 8 1550 216 0 0 0 chr6 126564728 126564752 -22952285 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1550 945 238 19 0 chr6 126564773 126564979 -22952058 + B3 SINE B2 2 211 -5 8 1550 918 276 118 43 chr6 126564996 126565150 -22951887 + L1MB7 LINE L1 5479 5656 -528 8 1550 430 124 28 37 chr6 126565150 126565259 -22951778 + Lx5 LINE L1 6943 7050 0 8 1550 918 276 118 43 chr6 126565259 126565282 -22951755 + L1MB7 LINE L1 5657 5685 -499 8 1550 483 63 0 0 chr6 126565282 126565345 -22951692 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 1550 918 276 118 43 chr6 126565345 126565719 -22951318 + L1MB7 LINE L1 5686 6072 -112 8 1550 580 299 1 18 chr6 126565970 126566160 -22950877 + B4 SINE B4 35 210 -14 9 1550 185 311 148 19 chr6 126566700 126566808 -22950229 - MIRb SINE MIR -32 236 115 9 1550 365 358 62 52 chr6 126567947 126568148 -22948889 + L2a LINE L2 3056 3263 -163 9 1550 1002 166 65 14 chr6 126568148 126568362 -22948675 - URR1B DNA MER1_type 0 225 1 9 1550 365 358 62 52 chr6 126568362 126568449 -22948588 + L2a LINE L2 3264 3346 -80 9 1550 643 306 6 19 chr6 126570418 126570578 -22946459 - RSINE1 SINE B4 -4 161 4 9 1550 387 0 0 0 chr6 126570830 126570873 -22946164 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1550 300 318 74 74 chr6 126570933 126571150 -22945887 + L2c LINE L2 3091 3307 -80 9 1550 1626 251 28 6 chr6 126571179 126571539 -22945498 + MTD LTR MaLR 52 419 0 9 1550 381 221 32 0 chr6 126571624 126571719 -22945318 + Charlie14a DNA MER1_type 313 410 -754 9 1550 357 155 56 0 chr6 126571700 126571771 -22945266 + Charlie14a DNA MER1_type 971 1045 -119 9 1550 828 224 39 39 chr6 126571918 126572122 -22944915 + B3 SINE B2 3 206 -10 1 1550 22 0 0 0 chr6 126572966 126572988 -22944049 + AT_rich Low_complexity Low_complexity 1 22 0 1 1550 384 330 109 21 chr6 126574594 126574832 -22942205 + MLT1C LTR MaLR 177 435 -32 1 1550 338 141 0 86 chr6 126575129 126575199 -22941838 + MTEa LTR MaLR 2 65 -314 1 1550 428 72 14 0 chr6 126575236 126575305 -22941732 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 1550 477 0 0 0 chr6 126578272 126578325 -22938712 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1550 394 347 101 7 chr6 126580136 126580412 -22936625 + LTR16A LTR ERVL 107 408 -43 1 1550 696 141 0 33 chr6 126580895 126581079 -22935958 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1550 495 90 0 0 chr6 126581105 126581183 -22935854 + (TG)n Simple_repeat Simple_repeat 2 79 0 1 1550 1075 123 0 0 chr6 126581857 126582011 -22935026 + MTC LTR MaLR 268 421 0 1 1550 252 279 0 16 chr6 126582015 126582077 -22934960 - B4A SINE B4 -224 68 8 1 1550 279 0 0 0 chr6 126582087 126582118 -22934919 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 1 1550 22 0 0 0 chr6 126583048 126583070 -22933967 + AT_rich Low_complexity Low_complexity 1 22 0 1 1550 196 368 47 16 chr6 126583841 126583968 -22933069 + MIRc SINE MIR 136 266 -2 1 1550 252 324 14 0 chr6 126584261 126584335 -22932702 + ID4 SINE ID 1 75 -8 1 1550 1790 164 21 18 chr6 126584546 126584563 -22932474 - RMER5 LTR ERV1 -9 525 508 1 1550 453 81 0 0 chr6 126584563 126584625 -22932412 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 1 1550 1790 164 21 18 chr6 126584625 126584937 -22932100 - RMER5 LTR ERV1 -27 507 195 1 1550 876 20 0 0 chr6 126585993 126586095 -22930942 + (CA)n Simple_repeat Simple_repeat 2 103 0 1 1550 246 32 0 0 chr6 126590395 126590426 -22926611 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1550 190 89 0 62 chr6 126591477 126591525 -22925512 + A-rich Low_complexity Low_complexity 2 46 0 1 1550 186 176 0 0 chr6 126591665 126591716 -22925321 + T-rich Low_complexity Low_complexity 4 54 0 1 1550 311 224 158 32 chr6 126596704 126596916 -22920121 - L2a LINE L2 -7 3419 3138 1 1550 271 286 224 18 chr6 126597118 126597147 -22919890 - B4A SINE B4 -41 251 140 1 1550 439 302 19 0 chr6 126597147 126597253 -22919784 - PB1D7 SINE Alu -6 114 7 1 1550 271 286 224 18 chr6 126597253 126597268 -22919769 - B4A SINE B4 -41 139 73 1 1550 256 235 0 0 chr6 126597388 126597439 -22919598 - RSINE1 SINE B4 -114 51 1 1 1550 234 296 186 41 chr6 126597976 126598170 -22918867 + LTR16D LTR ERVL 427 648 -3 1 1550 398 260 185 0 chr6 126598291 126598437 -22918600 - MER20 DNA MER1_type -2 217 45 1 1550 547 195 8 8 chr6 126598570 126598699 -22918338 + GA-rich Low_complexity Low_complexity 1 129 0 1 1550 1038 39 0 0 chr6 126598699 126598826 -22918211 + (GGGGA)n Simple_repeat Simple_repeat 1 127 0 1 1550 366 306 102 16 chr6 126599038 126599284 -22917753 - L2 LINE L2 -1532 1887 1621 1 1550 1508 143 0 4 chr6 126599779 126600004 -22917033 - URR1B DNA MER1_type 0 225 2 1 1550 466 264 132 84 chr6 126600198 126600388 -22916649 - MTD LTR MaLR -35 386 188 1 1550 1109 312 174 33 chr6 126600622 126601521 -22915516 + L1M4 LINE L1 3912 4936 -1210 1 1550 271 256 60 99 chr6 126601579 126601802 -22915235 + L1M4 LINE L1 5083 5297 -849 1 1550 795 213 68 24 chr6 126601824 126602031 -22915006 + B3 SINE B2 1 216 0 1 1550 939 246 39 0 chr6 126602320 126602527 -22914510 + B3 SINE B2 2 216 0 1 1550 256 160 27 27 chr6 126602667 126602737 -22914300 - L1M3 LINE L1 -2042 4104 4029 1 1550 285 341 23 15 chr6 126603741 126603872 -22913165 + MLT1L LTR MaLR 392 523 -87 1 1550 279 400 78 67 chr6 126604286 126604645 -22912392 - MLT1K LTR MaLR -97 498 136 1 1550 1096 281 62 59 chr6 126605035 126605100 -22911937 + MTEb LTR MaLR 1 62 -317 1 1550 1230 138 5 0 chr6 126605100 126605288 -22911749 + B2_Mm2 SINE B2 1 189 -6 1 1550 1096 281 62 59 chr6 126605288 126605315 -22911722 + MTEb LTR MaLR 63 78 -301 1 1550 183 80 0 0 chr6 126605315 126605340 -22911697 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1 1550 1096 281 62 59 chr6 126605340 126605617 -22911420 + MTEb LTR MaLR 79 372 -7 1 1550 310 297 0 0 chr6 126606333 126606407 -22910630 + ID4_ SINE ID 2 75 -8 1 1550 2035 120 3 138 chr6 126606454 126606582 -22910455 + ORR1A2 LTR MaLR 1 107 -220 1 1550 1119 61 20 7 chr6 126606582 126606730 -22910307 + B1_Mur4 SINE Alu 1 150 0 1 1550 2035 120 3 138 chr6 126606730 126606979 -22910058 + ORR1A2 LTR MaLR 108 327 0 1 1550 1682 239 37 11 chr6 126606979 126607352 -22909685 - MTD LTR MaLR -36 383 1 1 1550 289 247 12 24 chr6 126607499 126607582 -22909455 + MLT1A1 LTR MaLR 309 390 -18 1 1550 526 222 182 0 chr6 126607627 126607753 -22909284 + B1F SINE Alu 1 149 0 1 1550 255 325 56 24 chr6 126608074 126608200 -22908837 - MER3 DNA MER1_type -77 132 3 1 1550 734 67 9 0 chr6 126608596 126608701 -22908336 + (TC)n Simple_repeat Simple_repeat 2 107 0 1 1550 557 277 25 19 chr6 126609253 126609415 -22907622 - RSINE1 SINE B4 0 165 3 1 1550 402 150 0 0 chr6 126609589 126609605 -22907432 + (A)n Simple_repeat Simple_repeat 1 16 0 1 1550 1085 95 0 0 chr6 126609605 126609753 -22907284 + B1_Mus1 SINE Alu 1 148 0 1 1550 402 150 0 0 chr6 126609753 126609816 -22907221 + (A)n Simple_repeat Simple_repeat 1 63 0 1 1550 490 316 12 69 chr6 126610638 126610798 -22906239 + RSINE1 SINE B4 2 152 -13 1 1550 213 39 0 0 chr6 126610836 126610862 -22906175 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1 1550 567 0 0 0 chr6 126610872 126610935 -22906102 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 1 1550 269 146 0 0 chr6 126612454 126612495 -22904542 + B3A SINE B2 1 41 -157 1 1550 201 288 0 15 chr6 126612683 126612750 -22904287 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1550 31 26 0 0 chr6 126612750 126612788 -22904249 + AT_rich Low_complexity Low_complexity 1 38 0 1 1550 399 282 130 32 chr6 126613545 126613761 -22903276 - L1MEg LINE L1 -4753 1331 1095 1 1550 278 327 0 51 chr6 126613867 126614044 -22902993 + CT-rich Low_complexity Low_complexity 3 170 0 1 1550 553 190 0 48 chr6 126614125 126614313 -22902724 + (TATG)n Simple_repeat Simple_repeat 2 180 0 1 1550 216 217 0 21 chr6 126614315 126614362 -22902675 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 1 1550 921 292 158 53 chr6 126614363 126614474 -22902563 - Lx9 LINE L1 -130 7514 7417 1 1550 561 30 0 0 chr6 126614474 126614541 -22902496 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1 1550 921 292 158 53 chr6 126614541 126614979 -22902058 - Lx9 LINE L1 -228 7416 6908 1 1550 1168 204 140 19 chr6 126615000 126615315 -22901722 + L1_Rod LINE L1 5470 5822 -25 1 193 1342 240 48 6 chr6 126615309 126615665 -22901372 + Lx9 LINE L1 6511 6881 -763 1 1551 183 218 105 35 chr6 126617139 126617196 -22899841 - L2 LINE L2 -3348 71 11 1 1551 292 267 42 53 chr6 126619822 126619917 -22897120 + MER5A1 DNA MER1_type 6 99 -67 1 1551 251 283 0 0 chr6 126620019 126620072 -22896965 + RMER5 LTR ERV1 1 53 -481 1 1551 1799 224 82 20 chr6 126620596 126621034 -22896003 + RMER5 LTR ERV1 54 518 -16 1 1551 602 253 12 36 chr6 126621324 126621492 -22895545 - HAL1-2a_MD LINE L1 -516 2508 2345 1 1551 246 179 0 0 chr6 126621496 126621552 -22895485 + (ATG)n Simple_repeat Simple_repeat 2 57 0 1 1551 405 233 23 0 chr6 126621643 126621733 -22895304 + PB1D10 SINE Alu 14 111 -9 1 1551 360 295 0 31 chr6 126621868 126621966 -22895071 + MER2 DNA MER2_type 87 181 -164 1 1551 315 325 50 0 chr6 126622037 126622157 -22894880 + MER2 DNA MER2_type 209 334 -11 1 1551 367 311 65 8 chr6 126622369 126622492 -22894545 - MER74A LTR ERVL 0 558 429 1 1551 758 324 102 18 chr6 126623232 126623625 -22893412 - MER74A LTR ERVL -126 432 7 1 1551 180 318 97 53 chr6 126624011 126624124 -22892913 - MIR3 SINE MIR -85 123 6 1 1551 229 216 0 0 chr6 126624473 126624524 -22892513 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 1 1551 318 106 0 0 chr6 126624559 126624606 -22892431 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1551 212 196 18 18 chr6 126625651 126625708 -22891329 + L3b LINE CR1 238 294 -188 1 1551 450 53 0 0 chr6 126626496 126626553 -22890484 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1551 807 240 76 5 chr6 126627168 126627352 -22889685 - B3 SINE B2 -19 197 1 1 1551 720 238 0 0 chr6 126627393 126627519 -22889518 - B1_Mur3 SINE Alu -22 127 2 1 1551 385 89 0 37 chr6 126627607 126627689 -22889348 + (TTG)n Simple_repeat Simple_repeat 1 79 0 1 1551 269 276 39 13 chr6 126627694 126627771 -22889266 + B4A SINE B4 87 165 -127 1 1551 327 292 0 0 chr6 126627704 126627776 -22889261 + B1F2 SINE Alu 14 85 -64 1 1551 774 188 107 99 chr6 126628176 126628471 -22888566 + MTD LTR MaLR 4 415 -4 1 1551 1234 250 143 19 chr6 126628483 126628854 -22888183 - MTD LTR MaLR -2 417 1 1 1551 1041 260 78 88 chr6 126628925 126629054 -22887983 + Lx8 LINE L1 6883 7014 -459 1 1551 925 249 24 0 chr6 126629054 126629263 -22887774 + B3 SINE B2 2 215 -1 1 1551 1041 260 78 88 chr6 126629263 126629711 -22887326 + Lx8 LINE L1 7015 7454 -19 1 1551 415 240 0 0 chr6 126629939 126630014 -22887023 + ID4 SINE ID 9 83 0 1 1551 815 254 59 56 chr6 126630069 126630357 -22886680 + B4A SINE B4 2 290 -2 1 1551 373 270 71 59 chr6 126630506 126630675 -22886362 - L1M4 LINE L1 -3762 2384 2214 1 1551 24 0 0 0 chr6 126631110 126631134 -22885903 + AT_rich Low_complexity Low_complexity 1 24 0 1 1551 220 202 0 0 chr6 126631483 126631529 -22885508 + MIR SINE MIR 100 151 -125 1 1551 330 287 76 15 chr6 126631614 126631745 -22885292 - MER113A DNA MER1_type -91 223 85 1 1551 662 116 6 55 chr6 126634763 126634946 -22882091 + (CACCC)n Simple_repeat Simple_repeat 3 176 0 1 1551 387 225 90 0 chr6 126635603 126635692 -22881345 + MIRb SINE MIR 69 165 -103 1 1551 180 0 0 0 chr6 126636741 126636761 -22880276 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 1 1551 213 94 0 0 chr6 126637714 126637746 -22879291 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 1551 243 0 0 0 chr6 126637746 126637773 -22879264 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1 1551 200 111 28 0 chr6 126637774 126637810 -22879227 + (TTCTCC)n Simple_repeat Simple_repeat 1 37 0 1 1551 472 296 66 12 chr6 126637810 126637959 -22879078 - ID_B1 SINE B4 -47 245 85 2 1551 2425 42 6 28 chr6 126638097 126638416 -22878621 - L1Md_F3 LINE L1 -1 6583 6272 2 1551 1001 223 20 0 chr6 126638669 126638866 -22878171 + B3 SINE B2 1 201 -15 2 1551 294 29 0 0 chr6 126638870 126638905 -22878132 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1551 364 305 102 5 chr6 126639155 126639338 -22877699 + MER63A DNA AcHobo 5 205 -5 2 1551 837 262 54 140 chr6 126639375 126639726 -22877311 + MTE2a LTR MaLR 1 321 -58 2 1551 1531 156 93 7 chr6 126639726 126640017 -22877020 + Lx4A LINE L1 6740 7055 -3 2 1551 289 197 0 29 chr6 126640043 126640111 -22876926 + MTE2a LTR MaLR 300 365 -14 2 1551 295 387 13 13 chr6 126640349 126640506 -22876531 + MIR SINE MIR 14 170 -92 2 1551 287 245 25 241 chr6 126640506 126640705 -22876332 + RMER15 LTR ERVL 4 159 -416 2 1551 1058 258 75 4 chr6 126640707 126640987 -22876050 + RMER15 LTR ERVL 276 575 0 2 1551 21 57 0 0 chr6 126641309 126641344 -22875693 + AT_rich Low_complexity Low_complexity 1 35 0 2 1551 381 298 98 8 chr6 126641779 126641901 -22875136 - B1F SINE Alu -11 138 6 2 1551 262 265 136 10 chr6 126642174 126642277 -22874760 + MIRb SINE MIR 117 232 -36 2 1551 441 313 59 0 chr6 126642753 126642887 -22874150 + MTD LTR MaLR 42 191 -230 2 1551 217 177 50 12 chr6 126642926 126643006 -22874031 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1551 281 208 14 0 chr6 126643035 126643107 -22873930 + (TATG)n Simple_repeat Simple_repeat 4 76 0 2 1551 447 137 0 0 chr6 126643123 126643196 -22873841 + (CA)n Simple_repeat Simple_repeat 1 73 0 2 1551 389 224 0 0 chr6 126643196 126643272 -22873765 - MTD LTR MaLR -114 305 230 2 1551 471 282 152 63 chr6 126643409 126643757 -22873280 - MLT1C LTR MaLR -55 412 34 2 1551 292 364 52 26 chr6 126645275 126645430 -22871607 + MIR3 SINE MIR 32 190 -18 2 1551 248 287 101 87 chr6 126645533 126645682 -22871355 - MER21B LTR ERV1 -24 839 689 2 1551 579 354 74 46 chr6 126645711 126646078 -22870959 - MER21B LTR ERV1 -224 639 263 2 1551 361 227 9 9 chr6 126646175 126646286 -22870751 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 1551 835 215 9 51 chr6 126646487 126646703 -22870334 - Lx9 LINE L1 -451 7193 6987 2 1551 540 345 156 0 chr6 126646704 126646979 -22870058 - MER21B LTR ERV1 -542 321 4 2 1551 203 281 193 36 chr6 126647092 126647258 -22869779 - L2a LINE L2 -30 3396 3205 2 1551 213 351 133 75 chr6 126647777 126648017 -22869020 - L2 LINE L2 -3099 320 67 2 1551 681 327 46 23 chr6 126648483 126648746 -22868291 - B4A SINE B4 -22 270 2 2 1551 396 0 0 0 chr6 126649446 126649490 -22867547 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1551 219 69 0 0 chr6 126649942 126649971 -22867066 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 2 1551 484 291 17 17 chr6 126650616 126650841 -22866196 + (CA)n Simple_repeat Simple_repeat 1 225 0 2 1551 466 270 10 0 chr6 126652695 126652795 -22864242 + ID_B1 SINE B4 15 115 -109 2 1551 224 77 26 0 chr6 126652801 126652840 -22864197 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2 1551 498 219 5 2 chr6 126652861 126652969 -22864068 - PB1D10 SINE Alu -37 112 3 2 1551 871 219 75 25 chr6 126653212 126653413 -22863624 + ID_B1 SINE B4 5 215 -9 2 1551 731 236 7 0 chr6 126653426 126653566 -22863471 + B1_Mur1 SINE Alu 5 145 -4 2 1551 198 0 0 0 chr6 126654129 126654151 -22862886 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1551 245 344 88 0 chr6 126656479 126656639 -22860398 + L2 LINE L2 2526 2699 -720 2 1551 228 268 208 35 chr6 126656685 126656882 -22860155 + L2 LINE L2 2805 3035 -384 2 1551 536 285 0 28 chr6 126657807 126657824 -22859213 + ID_B1 SINE B4 88 103 -121 2 1551 300 53 0 0 chr6 126657824 126657862 -22859175 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1551 536 285 0 28 chr6 126657862 126657985 -22859052 + ID_B1 SINE B4 104 224 0 2 1551 866 151 22 20 chr6 126658820 126659014 -22858023 + B3 SINE B2 1 192 -3 2 1551 441 246 25 34 chr6 126659378 126659496 -22857541 + RSINE1 SINE B4 14 130 -35 2 1551 465 66 0 0 chr6 126659509 126659570 -22857467 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1551 346 326 118 88 chr6 126659772 126660203 -22856834 + HAL1 LINE L1 1784 2227 -280 2 1551 1334 157 9 13 chr6 126660442 126660668 -22856369 + URR1A DNA MER1_type 1 225 -1 2 1551 432 237 112 96 chr6 126660753 126660940 -22856097 + MER53 DNA hAT 2 191 -2 2 1551 252 334 118 61 chr6 126661024 126661217 -22855820 + HAL1 LINE L1 1464 1664 -843 2 1551 3972 145 39 28 chr6 126661217 126661940 -22855097 + Lx4B LINE L1 6324 7054 -4 2 1551 252 334 118 61 chr6 126661940 126662397 -22854640 + HAL1 LINE L1 1665 2151 -356 2 1551 336 332 56 68 chr6 126662517 126662872 -22854165 + L2a LINE L2 2913 3263 -163 2 1551 689 261 62 17 chr6 126662894 126663073 -22853964 - MTEa LTR MaLR -2 377 191 2 1551 378 0 0 0 chr6 126663308 126663350 -22853687 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1551 330 239 20 61 chr6 126663478 126663576 -22853461 + MLT1B LTR MaLR 286 379 -11 2 1551 354 45 0 0 chr6 126663618 126663662 -22853375 + (GAA)n Simple_repeat Simple_repeat 2 45 0 2 1551 1041 106 0 0 chr6 126663662 126663842 -22853195 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 1551 798 145 18 0 chr6 126663843 126664009 -22853028 + GA-rich Low_complexity Low_complexity 2 170 0 2 1551 300 327 0 84 chr6 126664612 126664638 -22852399 + B4 SINE B4 69 85 -207 2 1551 524 234 0 0 chr6 126664638 126664732 -22852305 + B1F SINE Alu 1 94 -55 2 1551 382 283 111 64 chr6 126664767 126665053 -22851984 + L1MD LINE L1 4808 5114 -1032 2 1551 718 243 0 7 chr6 126665066 126665207 -22851830 + B1_Mur2 SINE Alu 9 148 -1 2 1551 575 250 114 12 chr6 126665281 126665599 -22851438 + L1MD LINE L1 5132 5474 -885 2 1551 401 121 12 0 chr6 126665942 126666025 -22851012 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1551 204 40 0 0 chr6 126666464 126666489 -22850548 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1551 1239 48 0 0 chr6 126666489 126666636 -22850401 - B1_Mm SINE Alu 0 147 1 2 1551 250 232 35 35 chr6 126666841 126666926 -22850111 + MLT1B LTR MaLR 465 549 0 2 1551 1190 233 17 63 chr6 126667037 126667316 -22849721 + B4 SINE B4 3 270 -22 2 1551 282 95 0 0 chr6 126667316 126667358 -22849679 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1551 792 57 0 0 chr6 126667358 126667463 -22849574 + (GA)n Simple_repeat Simple_repeat 2 107 0 2 1551 1190 233 17 63 chr6 126667463 126667484 -22849553 + B4 SINE B4 271 289 -3 2 1551 206 318 43 65 chr6 126668085 126668223 -22848814 + MIR3 SINE MIR 69 203 -5 2 1551 250 242 185 92 chr6 126670253 126670332 -22846705 + MER2 DNA MER2_type 25 105 -240 2 1551 285 29 0 0 chr6 126670332 126670366 -22846671 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1551 1119 79 0 0 chr6 126670366 126670505 -22846532 - B1_Mus1 SINE Alu -9 139 1 2 1551 250 242 185 92 chr6 126670505 126670597 -22846440 + MER2 DNA MER2_type 106 212 -133 2 1551 238 324 15 0 chr6 126670623 126670691 -22846346 + MER2 DNA MER2_type 274 342 -3 2 1551 387 0 0 0 chr6 126671037 126671080 -22845957 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1551 845 261 23 0 chr6 126671612 126671788 -22845249 - B3A SINE B2 -18 180 1 2 1551 580 272 21 29 chr6 126671836 126671976 -22845061 - ID_B1 SINE B4 -5 219 81 2 1551 268 313 0 74 chr6 126671879 126672000 -22845037 + YREP_Mm Unknown Unknown 224 335 -1477 2 1551 387 288 26 18 chr6 126672209 126672322 -22844715 + MTD LTR MaLR 1 114 -305 2 1551 1269 261 40 66 chr6 126672329 126672678 -22844359 + MTE2a LTR MaLR 40 379 0 2 1551 240 188 0 0 chr6 126673219 126673288 -22843749 + GA-rich Low_complexity Low_complexity 3 71 0 2 1551 189 107 0 0 chr6 126674616 126674644 -22842393 + (TCTCC)n Simple_repeat Simple_repeat 3 30 0 2 1551 259 254 0 0 chr6 126674710 126674773 -22842264 - ID4 SINE ID -19 64 2 2 1551 348 306 44 7 chr6 126674783 126674918 -22842119 - B1F SINE Alu -9 140 1 2 1551 346 286 25 67 chr6 126675440 126675560 -22841477 + L1MCa LINE L1 1891 2005 -4503 2 1551 260 27 27 0 chr6 126676184 126676221 -22840816 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1551 1745 203 132 0 chr6 126676236 126676606 -22840431 - MTD LTR MaLR 0 419 1 2 1551 247 347 76 55 chr6 126677129 126677371 -22839666 - ORR1E LTR MaLR -172 222 1 2 1551 234 274 0 64 chr6 126679379 126679457 -22837580 - MIRb SINE MIR -73 195 123 2 1551 1216 61 0 0 chr6 126679459 126679606 -22837431 + B1_Mus1 SINE Alu 1 147 -1 2 1551 219 36 0 0 chr6 126679608 126679636 -22837401 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1551 244 354 11 28 chr6 126680403 126680583 -22836454 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 2 1551 201 147 0 0 chr6 126680919 126680953 -22836084 + (CCTA)n Simple_repeat Simple_repeat 2 35 0 2 1551 877 235 54 5 chr6 126680999 126681204 -22835833 - B3 SINE B2 -1 215 1 2 1551 491 318 82 6 chr6 126681232 126681403 -22835634 - MIR SINE MIR -43 219 36 2 1551 1283 156 0 66 chr6 126681423 126681664 -22835373 + URR1B DNA MER1_type 1 225 0 2 1551 403 188 72 0 chr6 126683417 126683555 -22833482 + (CA)n Simple_repeat Simple_repeat 2 149 0 2 1551 232 83 42 0 chr6 126683636 126683684 -22833353 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1551 446 164 33 60 chr6 126683718 126683900 -22833137 + (CA)n Simple_repeat Simple_repeat 1 177 0 2 1551 258 95 0 0 chr6 126684618 126684660 -22832377 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 2 1551 245 287 9 38 chr6 126684988 126685093 -22831944 + GA-rich Low_complexity Low_complexity 1 102 0 2 1551 264 355 24 16 chr6 126686679 126686805 -22830232 - MIRc SINE MIR -87 181 55 2 1551 468 62 0 0 chr6 126690584 126690648 -22826389 + (CAG)n Simple_repeat Simple_repeat 3 66 0 2 1551 1432 90 5 0 chr6 126693144 126693333 -22823704 - B2_Mm1a SINE B2 -3 190 1 2 1551 1002 245 139 62 chr6 126693469 126693808 -22823229 + MTEa LTR MaLR 1 365 -14 2 1551 1827 178 55 28 chr6 126694123 126694487 -22822550 - ORR1D1 LTR MaLR 0 374 1 2 1551 438 20 0 0 chr6 126695245 126695296 -22821741 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1551 1215 67 0 0 chr6 126695296 126695474 -22821563 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 1551 396 0 0 0 chr6 126695660 126695704 -22821333 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1551 491 340 82 60 chr6 126696669 126697072 -22819965 + MLT1I-int LTR MaLR 2 413 -974 3 1551 265 254 45 0 chr6 126697033 126697100 -22819937 - MTEa LTR MaLR -129 250 181 3 1551 280 89 17 35 chr6 126697336 126697394 -22819643 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 3 1551 1217 246 105 37 chr6 126697751 126698102 -22818935 - MTEa LTR MaLR -4 375 1 3 1551 250 270 0 16 chr6 126698102 126698164 -22818873 - MTEa LTR MaLR -222 137 77 3 1551 270 363 66 22 chr6 126698234 126698417 -22818620 + MLT1I-int LTR MaLR 763 953 -434 3 1551 2203 109 38 3 chr6 126698446 126698760 -22818277 - ORR1A2 LTR MaLR 0 327 3 3 1551 233 306 0 0 chr6 126699296 126699358 -22817679 + MLT1I LTR MaLR 347 408 -3 3 1551 252 0 0 0 chr6 126700096 126700124 -22816913 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1551 650 219 11 1 chr6 126700143 126700286 -22816751 - B1F SINE Alu 0 150 5 3 1551 687 102 27 13 chr6 126700819 126700968 -22816069 + (TCTG)n Simple_repeat Simple_repeat 4 154 0 3 1551 219 69 0 0 chr6 126700982 126701011 -22816026 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1551 236 250 25 100 chr6 126701014 126701084 -22815953 - RLTR40 LTR ERVK -142 675 613 3 1551 855 109 0 0 chr6 126701084 126701231 -22815806 + (TG)n Simple_repeat Simple_repeat 2 148 0 3 1551 236 250 25 100 chr6 126701231 126701280 -22815757 - RLTR40 LTR ERVK -205 612 565 3 1551 408 213 0 0 chr6 126701280 126701402 -22815635 + (TG)n Simple_repeat Simple_repeat 1 122 0 3 1551 190 308 0 0 chr6 126703914 126703966 -22813071 - MIRm SINE MIR 0 276 225 3 1551 259 177 31 46 chr6 126703975 126704040 -22812997 + L1M3 LINE L1 5669 5732 -439 3 1551 1222 195 28 5 chr6 126704075 126704286 -22812751 + B3 SINE B2 1 216 0 3 1551 994 241 10 68 chr6 126704600 126704966 -22812071 + RLTR11A2 LTR ERVK 1 326 -127 3 1551 286 328 48 40 chr6 126704975 126705099 -22811938 + RLTR11A2 LTR ERVK 284 408 -45 3 1551 42 57 0 0 chr6 126705189 126705259 -22811778 + AT_rich Low_complexity Low_complexity 1 70 0 3 1551 271 286 171 25 chr6 126705378 126705536 -22811501 - ORR1E LTR MaLR -105 254 74 3 1551 438 20 0 0 chr6 126705727 126705778 -22811259 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1551 225 0 0 0 chr6 126705779 126705804 -22811233 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1551 223 250 70 40 chr6 126706687 126706787 -22810250 + MIRb SINE MIR 39 141 -127 3 1551 829 275 55 79 chr6 126706985 126707308 -22809729 - RMER15 LTR ERVL -2 573 124 3 1551 853 172 48 18 chr6 126707308 126707474 -22809563 + Lx4B LINE L1 6871 7041 -17 3 1551 981 133 0 0 chr6 126707475 126707633 -22809404 + (GAAA)n Simple_repeat Simple_repeat 4 161 0 3 1551 391 247 67 191 chr6 126707633 126707786 -22809251 - RMER15 LTR ERVL -452 123 1 3 1551 1649 175 64 12 chr6 126707900 126708229 -22808808 + Lx4B LINE L1 6693 7038 -20 3 1551 783 0 0 0 chr6 126708229 126708316 -22808721 + (GAAA)n Simple_repeat Simple_repeat 4 90 0 3 1551 821 161 0 37 chr6 126708316 126708503 -22808534 + GA-rich Low_complexity Low_complexity 1 180 0 3 1551 405 301 25 50 chr6 126708827 126708851 -22808186 + B4A SINE B4 2 22 -270 3 1551 2947 49 0 0 chr6 126708851 126709197 -22807840 - ORR1A1 LTR MaLR 0 346 1 3 1551 405 301 25 50 chr6 126709197 126709291 -22807746 + B4A SINE B4 23 117 -175 3 1551 257 250 50 0 chr6 126709337 126709397 -22807640 + RSINE1 SINE B4 79 141 -24 3 1551 234 156 0 0 chr6 126709447 126709492 -22807545 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1551 471 35 0 0 chr6 126709493 126709550 -22807487 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1551 324 297 0 0 chr6 126709730 126709804 -22807233 + MER63D DNA AcHobo 312 385 -676 3 1551 296 200 0 0 chr6 126710521 126710571 -22806466 - B4 SINE B4 -14 278 229 3 1551 245 284 15 0 chr6 126710628 126710695 -22806342 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 3 1551 259 353 80 35 chr6 126710698 126710965 -22806072 - B4A SINE B4 -2 290 1 3 1551 929 76 7 0 chr6 126710991 126711135 -22805902 + (TTGG)n Simple_repeat Simple_repeat 2 146 0 3 1551 999 241 14 9 chr6 126711144 126711366 -22805671 - B4 SINE B4 -68 224 2 3 1551 226 247 78 58 chr6 126711368 126711471 -22805566 - Charlie15a DNA MER1_type -10 214 110 3 1551 1057 174 175 35 chr6 126711471 126711756 -22805281 + RMER1B Other Other 740 1064 -2 3 1551 4394 121 41 9 chr6 126711994 126712659 -22804378 - RMER13A LTR ERVK -172 688 3 3 1551 1862 97 141 21 chr6 126712737 126713063 -22803974 + ORR1B2 LTR MaLR 1 365 -2 3 1551 503 292 62 51 chr6 126713157 126713431 -22803606 - L1MB7 LINE L1 -323 5861 5585 3 1551 381 314 133 44 chr6 126713431 126713634 -22803403 - RMER12 LTR ERVK 0 1322 1102 3 1551 348 276 65 30 chr6 126713926 126714094 -22802943 - L1MB7 LINE L1 -942 5204 5031 3 1551 399 254 44 26 chr6 126714111 126714224 -22802813 - PB1D7 SINE Alu -2 118 4 3 1551 235 276 53 0 chr6 126714228 126714304 -22802733 - L1MB7 LINE L1 -1103 5043 4964 3 1551 346 289 160 49 chr6 126714367 126714611 -22802426 + B4 SINE B4 4 274 -18 3 1551 433 246 68 34 chr6 126714668 126714815 -22802222 + L2a LINE L2 3275 3426 0 3 1551 192 40 0 0 chr6 126714971 126714996 -22802041 + (G)n Simple_repeat Simple_repeat 1 25 0 3 1551 848 336 21 0 chr6 126715258 126715332 -22801705 + B4 SINE B4 3 81 -211 3 1551 315 0 0 0 chr6 126715332 126715367 -22801670 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 1551 848 336 21 0 chr6 126715367 126715572 -22801465 + B4 SINE B4 82 287 -5 3 1551 840 257 66 40 chr6 126715673 126715945 -22801092 + B4A SINE B4 2 280 -12 3 1551 495 0 0 0 chr6 126715958 126716013 -22801024 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1551 438 301 29 36 chr6 126716021 126716159 -22800878 - RSINE1 SINE B4 -18 147 11 3 1551 234 0 0 0 chr6 126717354 126717380 -22799657 + (CACCC)n Simple_repeat Simple_repeat 1 26 0 3 1551 333 0 0 0 chr6 126717644 126717681 -22799356 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1551 596 91 50 25 chr6 126718674 126718919 -22798118 + (CA)n Simple_repeat Simple_repeat 1 251 0 3 1551 467 248 117 29 chr6 126719011 126719148 -22797889 + MLT1J2 LTR MaLR 27 175 -273 3 1551 252 321 103 15 chr6 126719362 126719498 -22797539 - MIRm SINE MIR -124 152 5 3 1551 238 321 91 116 chr6 126719825 126720100 -22796937 - ORR1E LTR MaLR -5 354 87 3 1551 243 258 59 29 chr6 126720781 126720849 -22796188 + MT2B2 LTR ERVL 185 254 -330 3 1551 373 176 26 39 chr6 126720794 126720871 -22796166 + PB1D7 SINE Alu 45 120 0 3 1551 565 236 75 131 chr6 126720877 126721091 -22795946 - MLT1D LTR MaLR 0 505 304 3 1551 202 247 26 0 chr6 126721303 126721380 -22795657 + GA-rich Low_complexity Low_complexity 5 83 0 3 1551 829 172 0 17 chr6 126721395 126721572 -22795465 + GA-rich Low_complexity Low_complexity 1 174 0 3 1551 307 188 11 45 chr6 126722171 126722260 -22794777 + (TCTCTG)n Simple_repeat Simple_repeat 3 88 0 3 1551 189 0 0 0 chr6 126724982 126725003 -22792034 + (CACTC)n Simple_repeat Simple_repeat 2 22 0 3 1551 908 251 92 18 chr6 126725235 126725483 -22791554 + B4A SINE B4 1 269 -23 3 1551 288 0 0 0 chr6 126725483 126725515 -22791522 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1551 908 251 92 18 chr6 126725515 126725538 -22791499 + B4A SINE B4 270 292 0 3 1551 224 258 0 10 chr6 126725538 126725636 -22791401 + (CA)n Simple_repeat Simple_repeat 1 97 0 3 1551 291 21 41 20 chr6 126725892 126725941 -22791096 + (TCC)n Simple_repeat Simple_repeat 3 52 0 3 1551 1447 295 48 99 chr6 126726072 126726187 -22790850 + MER99 DNA hAT? 73 190 -641 3 1551 638 211 0 9 chr6 126726187 126726302 -22790735 + PB1D10 SINE Alu 2 115 -2 3 1551 1447 295 48 99 chr6 126726302 126726833 -22790204 + MER99 DNA hAT? 191 685 -146 3 1551 1254 120 11 0 chr6 126726833 126727017 -22790020 - B2_Mm1t SINE B2 -6 187 2 3 1551 1447 295 48 99 chr6 126727017 126727169 -22789868 + MER99 DNA hAT? 686 831 0 3 1551 465 258 103 16 chr6 126727404 126727530 -22789507 + B1F2 SINE Alu 13 149 0 3 1551 241 279 35 71 chr6 126727559 126727644 -22789393 + PB1D10 SINE Alu 13 94 -23 3 1551 571 279 54 36 chr6 126728432 126728599 -22788438 + RLTR16 LTR ERVK 74 243 -262 3 1551 500 244 174 23 chr6 126728703 126728875 -22788162 - B4 SINE B4 -49 243 46 3 1551 840 320 130 11 chr6 126729034 126729502 -22787535 - Lx7 LINE L1 -334 7362 6839 3 1551 316 273 71 26 chr6 126729552 126729665 -22787372 - MER44D DNA MER2_type -585 120 3 3 1551 473 310 64 48 chr6 126729694 126730149 -22786888 - L1MC4 LINE L1 -1 8041 7588 3 1551 543 31 0 0 chr6 126730164 126730229 -22786808 + (TCTTG)n Simple_repeat Simple_repeat 1 65 0 3 1551 234 172 175 0 chr6 126730257 126730325 -22786712 - PB1D10 SINE Alu -29 91 11 3 1551 456 263 144 15 chr6 126730409 126730610 -22786427 - L1MC4 LINE L1 -623 7419 7193 3 1551 316 259 104 22 chr6 126730736 126730897 -22786140 - L1MC4 LINE L1 -1046 6996 6775 3 1551 549 243 26 26 chr6 126730926 126731040 -22785997 + ID_B1 SINE B4 99 212 -12 3 1551 381 260 9 65 chr6 126731030 126731137 -22785900 + RSINE1 SINE B4 55 155 -10 3 1551 420 55 0 0 chr6 126731145 126731200 -22785837 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1551 2695 185 64 10 chr6 126731465 126731978 -22785059 + RLTR20A LTR ERVK 1 541 0 3 1551 451 268 18 18 chr6 126732034 126732148 -22784889 - PB1D10 SINE Alu -3 114 1 3 1551 434 120 13 0 chr6 126732248 126732323 -22784714 + (TCC)n Simple_repeat Simple_repeat 2 77 0 3 1551 1134 59 20 20 chr6 126732580 126733040 -22783997 + (TG)n Simple_repeat Simple_repeat 1 460 0 3 1551 419 324 0 0 chr6 126733063 126733165 -22783872 - RSINE1 SINE B4 -61 104 3 3 1551 299 368 12 6 chr6 126733182 126733346 -22783691 - L1MC4 LINE L1 -2235 5647 5483 3 1551 279 278 61 10 chr6 126734701 126734799 -22782238 + MIRb SINE MIR 49 151 -117 3 1551 629 25 13 0 chr6 126734917 126734996 -22782041 + (GGGA)n Simple_repeat Simple_repeat 2 81 0 3 1551 479 17 0 16 chr6 126735323 126735384 -22781653 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1551 491 168 0 14 chr6 126735849 126735988 -22781049 + (TCTCTG)n Simple_repeat Simple_repeat 2 138 0 3 1551 1205 136 75 19 chr6 126736028 126736308 -22780729 - ORR1B2 LTR MaLR -10 357 1 3 1551 225 290 144 8 chr6 126736472 126736604 -22780433 + MIR3 SINE MIR 38 187 -21 3 1551 823 92 0 23 chr6 126736772 126736905 -22780132 + (CCCCCT)n Simple_repeat Simple_repeat 6 135 0 3 1551 273 196 0 0 chr6 126736916 126736972 -22780065 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1551 630 267 272 31 chr6 126737441 126737727 -22779310 + MTEa LTR MaLR 4 358 -21 3 1551 212 267 115 16 chr6 126738886 126738947 -22778090 + PB1D10 SINE Alu 10 76 -41 3 1551 382 267 179 9 chr6 126739497 126739603 -22777434 + B3 SINE B2 1 124 -92 3 1551 24 53 0 0 chr6 126739603 126739641 -22777396 + AT_rich Low_complexity Low_complexity 1 38 0 4 1551 367 255 52 43 chr6 126739664 126739779 -22777258 + PB1D10 SINE Alu 2 117 0 4 1551 183 381 93 32 chr6 126739787 126740034 -22777003 - L3 LINE CR1 -460 4029 3768 4 1551 263 185 18 18 chr6 126740050 126740105 -22776932 - B1F1 SINE Alu -1 148 94 4 1551 271 294 69 64 chr6 126740498 126740746 -22776291 + MTD LTR MaLR 102 403 -16 4 1551 4391 87 14 2 chr6 126740901 126741474 -22775563 - MT2B2 LTR ERVL -4 580 1 4 1551 405 0 0 0 chr6 126742877 126742922 -22774115 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1551 528 311 29 47 chr6 126742947 126743119 -22773918 - B3A SINE B2 -29 169 1 4 1551 29 0 0 0 chr6 126743141 126743170 -22773867 + AT_rich Low_complexity Low_complexity 1 29 0 4 1551 387 292 90 13 chr6 126743454 126743610 -22773427 + MIRb SINE MIR 32 199 -69 4 1551 505 240 138 53 chr6 126743781 126743942 -22773095 + B3 SINE B2 5 184 -32 4 1551 279 0 0 0 chr6 126743942 126743973 -22773064 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1551 505 240 138 53 chr6 126743973 126744000 -22773037 + B3 SINE B2 185 209 -7 4 1551 318 231 44 53 chr6 126744027 126744141 -22772896 + PB1D10 SINE Alu 5 117 0 4 1551 632 294 0 50 chr6 126744457 126744636 -22772401 - B4A SINE B4 -81 211 42 4 1551 482 176 71 0 chr6 126744674 126744759 -22772278 - B1F SINE Alu -58 91 1 4 1551 257 252 0 116 chr6 126744761 126744778 -22772259 - MT2B LTR ERVL -349 252 154 4 1551 904 172 14 0 chr6 126745131 126745276 -22771761 + B1_Mur4 SINE Alu 4 150 0 4 1551 303 241 23 46 chr6 126745294 126745381 -22771656 + MT2B LTR ERVL 173 257 -344 4 1551 681 141 0 0 chr6 126745306 126745405 -22771632 + B1_Mur3 SINE Alu 30 128 -21 4 1551 24 0 0 0 chr6 126745405 126745429 -22771608 + AT_rich Low_complexity Low_complexity 1 24 0 4 1551 700 139 156 0 chr6 126745453 126745575 -22771462 + B1_Mus1 SINE Alu 1 141 -7 4 1551 282 278 0 20 chr6 126745578 126745677 -22771360 + GA-rich Low_complexity Low_complexity 3 99 0 4 193 883 292 77 103 chr6 126745716 126746626 -22770411 + L1MA6 LINE L1 5409 6294 -6 4 1552 1536 53 37 0 chr6 126746670 126746857 -22770180 + B2_Mm2 SINE B2 1 194 -1 4 1552 673 248 7 0 chr6 126747108 126747249 -22769788 + B1F2 SINE Alu 3 144 -5 4 1552 1203 101 0 17 chr6 126747264 126747421 -22769616 + B2_Mm2 SINE B2 3 159 -36 4 1552 351 0 0 0 chr6 126747421 126747460 -22769577 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 4 1552 1203 101 0 17 chr6 126747460 126747474 -22769563 + B2_Mm2 SINE B2 160 171 -24 4 1552 481 237 185 8 chr6 126747474 126747593 -22769444 + B1F SINE Alu 10 149 0 4 1552 423 343 47 29 chr6 126747758 126747929 -22769108 + MLT1J LTR MaLR 72 245 -267 4 1552 185 192 36 55 chr6 126748202 126748257 -22768780 + L3 LINE CR1 731 784 -3705 4 1552 2580 124 53 38 chr6 126748283 126748735 -22768302 + RMER6B LTR ERVK 1 459 -2 4 1552 1188 50 0 0 chr6 126748745 126748885 -22768152 + B1_Mm SINE Alu 1 140 -7 4 1552 229 267 86 38 chr6 126749204 126749309 -22767728 + L2 LINE L2 2246 2355 -1064 4 1552 3345 55 43 9 chr6 126749949 126750371 -22766666 + RLTR10C LTR ERVK 1 436 0 4 1552 185 0 40 0 chr6 126750476 126750501 -22766536 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1552 310 310 11 44 chr6 126751394 126751485 -22765552 - PB1D10 SINE Alu -29 88 1 4 1552 4621 194 22 18 chr6 126752083 126752938 -22764099 - Lx5 LINE L1 -7 7043 6185 4 1552 396 302 0 20 chr6 126753414 126753512 -22763525 - B1F1 SINE Alu -33 116 21 4 1552 319 271 21 83 chr6 126753523 126753668 -22763369 - MIR SINE MIR -64 198 63 4 1552 1169 41 0 0 chr6 126753777 126753922 -22763115 - L1Md_A LINE L1 0 6582 6438 4 1552 495 0 0 0 chr6 126753958 126754013 -22763024 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1552 219 36 0 0 chr6 126754090 126754118 -22762919 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 4 1552 650 246 7 14 chr6 126754158 126754306 -22762731 - RSINE1 SINE B4 -16 149 3 4 1552 384 321 42 47 chr6 126754614 126754807 -22762230 - MIR3 SINE MIR -5 203 12 4 1552 203 388 61 18 chr6 126755464 126755627 -22761410 + MIRb SINE MIR 27 196 -72 4 1552 234 288 27 0 chr6 126756131 126756204 -22760833 - L1MB1 LINE L1 -103 6086 6012 4 1552 515 234 79 26 chr6 126756311 126756517 -22760520 - B4A SINE B4 -28 264 1 4 1552 228 278 0 0 chr6 126756632 126756686 -22760351 - L1MB5 LINE L1 -209 5965 5912 4 1552 237 323 28 63 chr6 126756722 126756864 -22760173 - L1MB5 LINE L1 -338 5846 5710 4 1552 845 187 149 5 chr6 126756907 126757095 -22759942 - B3 SINE B2 0 216 2 4 1552 279 0 0 0 chr6 126757453 126757484 -22759553 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1552 1173 62 0 14 chr6 126757484 126757621 -22759416 - B1_Mm SINE Alu -9 138 2 4 1552 570 221 43 29 chr6 126757982 126758122 -22758915 + B1_Mur2 SINE Alu 1 142 -7 4 1552 305 370 63 84 chr6 126758122 126758455 -22758582 - L1M4b LINE L1 -6571 763 438 4 1552 406 280 46 114 chr6 126758575 126758837 -22758200 - L1M4b LINE L1 -6974 360 117 4 1552 1392 60 27 5 chr6 126758975 126759160 -22757877 - B2_Mm1a SINE B2 -3 190 2 4 1552 548 275 42 104 chr6 126759201 126759461 -22757576 - ORR1D1 LTR MaLR 0 379 136 4 1552 431 231 44 58 chr6 126759504 126759718 -22757319 + L1M3 LINE L1 5307 5519 -665 4 1552 258 312 33 72 chr6 126759722 126759874 -22757163 + ID_B1 SINE B4 1 146 -78 4 1552 349 249 1 32 chr6 126759937 126760047 -22756990 + L1M3 LINE L1 5532 5638 -665 4 1552 1143 78 0 0 chr6 126760234 126760375 -22756662 + B1_Mus2 SINE Alu 2 142 -5 4 1552 192 77 0 0 chr6 126760378 126760404 -22756633 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4 1552 2228 124 14 19 chr6 126760665 126761035 -22756002 + RLTR9A LTR ERVK 1 368 0 4 1552 550 233 48 30 chr6 126761036 126761204 -22755833 - ORR1D1 LTR MaLR -203 171 1 4 1552 270 291 23 11 chr6 126761371 126761458 -22755579 + MIRb SINE MIR 79 166 -102 4 1552 343 250 12 0 chr6 126761460 126761540 -22755497 + ID4 SINE ID 2 82 -1 4 1552 466 288 17 17 chr6 126761550 126761670 -22755367 + PB1D7 SINE Alu 1 120 0 4 1552 291 301 58 0 chr6 126761848 126761951 -22755086 + BC1_Mm scRNA scRNA 2 110 -42 4 1552 592 241 44 0 chr6 126762263 126762400 -22754637 - ID_B1 SINE B4 -2 222 80 4 1552 555 181 7 29 chr6 126762427 126762559 -22754478 - B1F SINE Alu -18 130 7 4 1552 279 330 71 55 chr6 126762447 126762630 -22754407 - B4 SINE B4 -88 204 19 4 1552 235 280 192 7 chr6 126763586 126763737 -22753300 + L1MEc LINE L1 38 216 -6184 4 1552 322 117 0 49 chr6 126763775 126763856 -22753181 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 4 1552 321 368 65 7 chr6 126764083 126764236 -22752801 - L1MC LINE L1 -3590 2556 2395 4 1552 269 212 60 15 chr6 126765013 126765080 -22751957 + B1F1 SINE Alu 9 78 -71 4 1552 686 158 283 73 chr6 126766412 126766631 -22750406 - RMER13B LTR ERVK 0 908 644 4 1552 4493 91 91 10 chr6 126766631 126767338 -22749699 + RMER17A2 LTR ERVK 2 765 -141 4 1552 2857 173 101 14 chr6 126767318 126767892 -22749145 - RMER13B LTR ERVK -284 624 1 4 1552 1070 45 0 0 chr6 126768254 126768386 -22748651 + B1_Mus1 SINE Alu 7 138 -10 4 1552 207 0 0 0 chr6 126768386 126768409 -22748628 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1552 461 261 136 6 chr6 126768557 126768719 -22748318 + RLTR41 LTR ERV1 264 446 0 4 1552 22 80 0 0 chr6 126768860 126768910 -22748127 + AT_rich Low_complexity Low_complexity 1 50 0 4 1552 1308 91 0 0 chr6 126769132 126769542 -22747495 + (CCAA)n Simple_repeat Simple_repeat 1 410 0 4 1552 1214 68 0 0 chr6 126769814 126769960 -22747077 - B1_Mus2 SINE Alu 0 147 2 4 1552 819 249 24 33 chr6 126770139 126770351 -22746686 + ID_B1 SINE B4 1 210 -14 4 1552 257 212 239 83 chr6 126770657 126770837 -22746200 + MER67C LTR ERV1 174 381 -330 4 1552 422 110 0 27 chr6 126771297 126771372 -22745665 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 4 1552 339 239 28 25 chr6 126771501 126771591 -22745446 + ID SINE ID 1 86 -206 4 1552 563 246 69 0 chr6 126772598 126772728 -22744309 - B1F SINE Alu -8 141 3 4 1552 228 352 24 16 chr6 126773575 126773702 -22743335 - Charlie5 DNA MER1_type -2496 128 1 4 1552 265 311 0 97 chr6 126773853 126773967 -22743070 + PB1D10 SINE Alu 15 117 0 4 1552 302 312 73 47 chr6 126774217 126774449 -22742588 - L2 LINE L2 -1253 2166 1929 4 1552 604 248 44 0 chr6 126774483 126774620 -22742417 + ID_B1 SINE B4 80 222 -2 4 1552 330 315 67 73 chr6 126775238 126775416 -22741621 - ID_B1 SINE B4 -46 178 2 4 1552 210 37 0 0 chr6 126775451 126775478 -22741559 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1552 398 186 59 16 chr6 126775478 126775596 -22741441 - B1_Mm SINE Alu -8 141 17 4 1552 300 29 0 0 chr6 126775677 126775712 -22741325 + U2 snRNA snRNA 1 35 -153 4 1552 330 287 7 83 chr6 126775763 126775939 -22741098 + B1F SINE Alu 2 129 -20 4 1552 334 251 67 17 chr6 126776166 126776293 -22740744 - ID4_ SINE ID -17 135 6 4 1552 192 311 0 16 chr6 126776319 126776381 -22740656 + L2a LINE L2 3345 3405 -21 4 1552 261 295 0 16 chr6 126776389 126776451 -22740586 - ID2 SINE ID -18 65 5 4 1552 441 0 0 0 chr6 126776481 126776530 -22740507 + (AAGTG)n Simple_repeat Simple_repeat 3 51 0 4 1552 1057 79 7 0 chr6 126776551 126776691 -22740346 + B2_Mm1t SINE B2 40 180 -13 4 1552 241 146 371 20 chr6 126776730 126776827 -22740210 + B2_Mm2 SINE B2 64 194 -1 4 1552 1225 34 7 14 chr6 126777161 126777309 -22739728 + B1_Mus2 SINE Alu 1 147 0 4 1552 288 206 54 14 chr6 126777858 126777932 -22739105 - PB1D7 SINE Alu -1 119 43 4 1552 455 288 33 73 chr6 126779158 126779308 -22737729 - RSINE1 SINE B4 -19 146 3 5 1552 318 314 113 7 chr6 126779629 126779770 -22737267 - L1ME1 LINE L1 -10 6169 6014 5 1552 697 246 63 0 chr6 126780038 126780213 -22736824 - B3 SINE B2 -29 187 2 5 1552 267 288 58 36 chr6 126780216 126780353 -22736684 - L1M4 LINE L1 -944 5202 5063 5 1552 227 237 105 0 chr6 126780452 126780528 -22736509 - L1M4 LINE L1 -1233 4913 4830 5 1552 296 237 158 49 chr6 126780588 126780746 -22736291 + B1F SINE Alu 1 148 -1 5 1552 591 236 198 6 chr6 126780857 126781122 -22735915 - L1M4 LINE L1 -1461 4685 4382 5 1552 886 214 123 12 chr6 126781180 126781431 -22735606 - B4A SINE B4 -11 281 3 5 1552 363 263 99 20 chr6 126781442 126781543 -22735494 - L1M4 LINE L1 -1775 4371 4263 5 1552 450 36 0 0 chr6 126781556 126781612 -22735425 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1552 685 244 79 23 chr6 126781679 126781882 -22735155 + B4A SINE B4 1 216 -76 5 1552 426 324 7 7 chr6 126782088 126782234 -22734803 - B1F SINE Alu 0 149 4 5 1552 283 334 62 10 chr6 126782613 126782743 -22734294 + B1F SINE Alu 4 139 -10 5 1552 252 316 38 0 chr6 126782769 126782848 -22734189 + ID4_ SINE ID 2 83 0 5 1552 1806 201 60 30 chr6 126783410 126783810 -22733227 + MTD LTR MaLR 8 419 0 5 1552 277 339 60 9 chr6 126784163 126784279 -22732758 + B1F SINE Alu 18 139 -10 5 1552 209 33 33 0 chr6 126784662 126784692 -22732345 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 5 1552 345 264 83 53 chr6 126784694 126784826 -22732211 + B4 SINE B4 50 185 -107 5 1552 455 206 48 5 chr6 126784739 126784847 -22732190 + B1_Mus1 SINE Alu 5 114 -6 5 1552 403 217 98 16 chr6 126784857 126784979 -22732058 + MTEa LTR MaLR 209 340 -39 5 1552 341 258 99 61 chr6 126785111 126785335 -22731702 - MLT1B LTR MaLR -107 283 34 5 1552 273 240 84 15 chr6 126785456 126785642 -22731395 + L1MC1 LINE L1 5764 6005 -339 5 1552 765 118 50 0 chr6 126786553 126786659 -22730378 + RMER6B LTR ERVK 1 112 -349 5 1552 2350 150 64 16 chr6 126786659 126787099 -22729938 + RMER6B LTR ERVK 1 461 0 5 1552 765 118 50 0 chr6 126787099 126787111 -22729926 + RMER6B LTR ERVK 113 124 -337 5 1552 224 347 65 38 chr6 126787588 126787849 -22729188 + L2b LINE L2 2120 2387 -1032 5 1552 292 293 76 51 chr6 126787977 126788135 -22728902 + RLTR42-int LTR ERVK 1153 1314 -4208 5 1552 546 273 39 0 chr6 126788695 126788823 -22728214 - MER5B DNA MER1_type -45 133 1 5 1552 617 275 74 99 chr6 126789242 126789444 -22727593 - B3A SINE B2 -1 197 1 5 1552 255 385 33 86 chr6 126789488 126789698 -22727339 + L2b LINE L2 3172 3370 -5 5 1552 241 279 62 12 chr6 126790215 126790295 -22726742 + ID SINE ID 1 84 -140 5 1552 355 197 13 26 chr6 126790889 126790967 -22726070 + PB1D10 SINE Alu 2 78 -39 5 1552 506 219 27 62 chr6 126791125 126791271 -22725766 + B1F1 SINE Alu 1 141 -8 5 1552 319 275 0 14 chr6 126791282 126791352 -22725685 + ID4_ SINE ID 1 69 -14 5 1552 210 191 0 0 chr6 126791356 126791403 -22725634 + GA-rich Low_complexity Low_complexity 1 47 0 5 1552 423 252 36 45 chr6 126791634 126791746 -22725291 + PB1D10 SINE Alu 7 117 0 5 1552 244 309 20 49 chr6 126792620 126792632 -22724405 - RSINE1 SINE B4 -65 100 89 5 1552 246 62 0 0 chr6 126792632 126792664 -22724373 + (CTTA)n Simple_repeat Simple_repeat 1 32 0 5 1552 357 297 2 6 chr6 126792664 126792753 -22724284 - ID SINE ID -77 88 1 5 1552 537 290 22 0 chr6 126792925 126793063 -22723974 - B1F SINE Alu -6 143 3 5 1552 424 45 91 0 chr6 126793313 126793379 -22723658 + B2_Mm2 SINE B2 104 175 -20 5 1552 684 237 55 122 chr6 126793485 126793689 -22723348 - MER33 DNA MER1_type -13 311 123 5 1552 1245 34 0 7 chr6 126793689 126793836 -22723201 - B1_Mm SINE Alu 0 147 2 5 1552 684 216 36 84 chr6 126793836 126793975 -22723062 - MER33 DNA MER1_type -202 122 7 5 1552 694 306 56 37 chr6 126793977 126794191 -22722846 + MER58A DNA MER1_type 2 219 -5 5 1552 334 308 80 24 chr6 126795454 126795631 -22721406 + L1MEg LINE L1 1964 2110 -4132 5 1552 499 222 6 146 chr6 126795657 126795815 -22721222 + B4A SINE B4 83 218 -74 5 1552 300 53 0 0 chr6 126796072 126796110 -22720927 + (ACTG)n Simple_repeat Simple_repeat 2 39 0 5 1552 471 111 11 32 chr6 126796279 126796372 -22720665 + Lx LINE L1 6564 6654 0 5 1552 1198 83 0 0 chr6 126796456 126796612 -22720425 + B2_Mm2 SINE B2 2 157 -38 5 1552 546 91 0 0 chr6 126796612 126796689 -22720348 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 5 1552 253 114 0 0 chr6 126796689 126796724 -22720313 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1552 549 305 23 0 chr6 126797639 126797770 -22719267 - B1F1 SINE Alu -10 139 6 5 1552 231 220 0 106 chr6 126799881 126799947 -22717090 - ID_B1 SINE B4 -2 222 164 5 1552 308 265 0 14 chr6 126799890 126799959 -22717078 - PB1D7 SINE Alu -7 113 46 5 1552 289 227 32 74 chr6 126800198 126800293 -22716744 + B4A SINE B4 77 167 -125 5 1552 414 202 112 0 chr6 126800223 126800312 -22716725 + PB1D10 SINE Alu 10 108 -9 5 1552 558 259 59 95 chr6 126800391 126800613 -22716424 + RMER5 LTR ERV1 15 228 -306 5 1552 1640 180 116 38 chr6 126800621 126800814 -22716223 - Lx5 LINE L1 -38 7012 6822 5 1552 402 21 0 0 chr6 126800814 126800861 -22716176 + (CAGG)n Simple_repeat Simple_repeat 1 47 0 5 1552 1640 180 116 38 chr6 126800861 126801037 -22716000 - Lx5 LINE L1 -229 6821 6615 5 1552 819 269 120 45 chr6 126801039 126801331 -22715706 + RMER5 LTR ERV1 194 507 -27 5 1552 249 109 0 0 chr6 126801552 126801598 -22715439 + (T)n Simple_repeat Simple_repeat 1 46 0 5 1552 1062 72 58 0 chr6 126801600 126801739 -22715298 - B1_Mus1 SINE Alu 0 148 2 5 1552 224 262 83 55 chr6 126801743 126801852 -22715185 - PB1D10 SINE Alu -5 112 1 5 1552 556 292 0 0 chr6 126804202 126804322 -22712715 - B1F SINE Alu -29 120 1 5 1552 295 238 61 143 chr6 126804343 126804455 -22712582 - B4A SINE B4 -14 278 89 5 1552 455 285 8 8 chr6 126804473 126804597 -22712440 - B4 SINE B4 -165 127 4 5 1552 1119 7 14 7 chr6 126804610 126804751 -22712286 + (TG)n Simple_repeat Simple_repeat 2 143 0 5 1552 842 276 71 41 chr6 126804774 126805042 -22711995 - B4A SINE B4 -16 276 1 5 1552 198 263 35 0 chr6 126805148 126805205 -22711832 + MIR3 SINE MIR 104 162 -46 5 1552 494 308 7 0 chr6 126805295 126805438 -22711599 - B1F SINE Alu -5 144 1 5 1552 390 333 24 8 chr6 126805551 126805675 -22711362 + ID_B1 SINE B4 99 224 0 5 1552 432 0 0 0 chr6 126805766 126805814 -22711223 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1552 203 325 37 67 chr6 126806129 126806264 -22710773 - L2c LINE L2 0 3387 3257 5 1552 1238 48 0 13 chr6 126806363 126806512 -22710525 + B1_Mus1 SINE Alu 2 148 0 5 1552 619 242 163 6 chr6 126807535 126807739 -22709298 - MTD LTR MaLR -142 279 48 5 1552 304 231 0 0 chr6 126808017 126808082 -22708955 - PB1D10 SINE Alu 0 117 53 5 1552 582 267 27 14 chr6 126808532 126808680 -22708357 - RSINE1 SINE B4 -13 152 3 5 1552 1793 118 40 106 chr6 126809712 126810062 -22706975 - ORR1A4 LTR MaLR -2 327 1 5 1552 180 0 0 0 chr6 126810534 126810554 -22706483 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1552 1194 48 7 0 chr6 126810555 126810701 -22706336 - B1_Mus1 SINE Alu 0 148 2 5 1552 558 268 38 60 chr6 126810705 126810888 -22706149 - B3A SINE B2 -5 193 15 5 1552 653 229 44 37 chr6 126810996 126811132 -22705905 + RSINE1 SINE B4 3 139 -26 5 1552 263 292 196 7 chr6 126811536 126811674 -22705363 - LTR41B LTR ERVL -594 164 1 5 1552 577 262 18 48 chr6 126811737 126811905 -22705132 + RSINE1 SINE B4 3 165 0 5 1552 245 346 18 0 chr6 126812427 126812496 -22704541 + B1F2 SINE Alu 1 71 -46 5 1552 516 72 0 0 chr6 126813179 126813248 -22703789 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1552 630 201 253 29 chr6 126813305 126813479 -22703558 - B3 SINE B2 -2 214 2 5 1552 397 289 1 9 chr6 126813943 126814048 -22702989 + PB1D9 SINE Alu 11 115 -5 5 1552 247 386 109 44 chr6 126814201 126814442 -22702595 + MIR SINE MIR 4 266 -2 5 1552 185 209 34 23 chr6 126819166 126819254 -22697783 + (CATA)n Simple_repeat Simple_repeat 4 92 0 5 1552 454 239 42 8 chr6 126819362 126819480 -22697557 - B1F SINE Alu -1 148 27 5 1552 501 262 34 20 chr6 126819790 126819938 -22697099 - ORR1E LTR MaLR 0 379 230 5 1552 189 0 0 0 chr6 126819944 126819965 -22697072 + (CAGG)n Simple_repeat Simple_repeat 4 24 0 5 1552 520 289 69 6 chr6 126819965 126820125 -22696912 - ORR1E LTR MaLR -189 170 1 5 1552 278 216 0 0 chr6 126820174 126820225 -22696812 + B1F SINE Alu 83 133 -16 5 1552 246 105 0 0 chr6 126820239 126820277 -22696760 + (GGA)n Simple_repeat Simple_repeat 3 40 0 5 1552 303 300 19 112 chr6 126820333 126820547 -22696490 - L1MD LINE L1 -767 5475 5282 5 1552 853 226 36 55 chr6 126820556 126820776 -22696261 - ID_B1 SINE B4 -7 217 2 5 1552 278 167 21 0 chr6 126820936 126820984 -22696053 - ID_B1 SINE B4 -53 171 123 5 1552 402 283 109 51 chr6 126821132 126821307 -22695730 + MER20 DNA MER1_type 1 185 -34 5 1552 321 287 0 42 chr6 126821370 126821421 -22695616 - ID4_ SINE ID -22 130 7 5 1552 308 256 12 60 chr6 126821421 126821504 -22695533 - ID SINE ID -139 85 7 5 1552 280 215 0 12 chr6 126821677 126821757 -22695280 - L1MEf LINE L1 -4168 2032 1954 5 1552 246 218 0 54 chr6 126822026 126822118 -22694919 - L1MEf LINE L1 -4658 1542 1427 5 1552 303 321 61 8 chr6 126822399 126822531 -22694506 - B1F SINE Alu -10 139 1 5 1552 274 274 92 50 chr6 126822547 126822666 -22694371 - B1F2 SINE Alu -22 125 2 5 1552 652 277 214 28 chr6 126823124 126823443 -22693594 - MTE2b LTR MaLR 0 370 1 5 1552 357 256 70 0 chr6 126823752 126823838 -22693199 + B1F SINE Alu 11 102 -47 5 1552 205 138 0 0 chr6 126824737 126824766 -22692271 + (GAA)n Simple_repeat Simple_repeat 2 30 0 5 1552 268 312 38 0 chr6 126824793 126824873 -22692164 + ID_B1 SINE B4 88 170 -54 5 1552 374 184 91 64 chr6 126824910 126825020 -22692017 - RSINE1 SINE B4 -24 141 29 6 1552 246 345 69 0 chr6 126825381 126825468 -22691569 + B4A SINE B4 3 95 -197 6 1552 608 237 39 39 chr6 126825468 126825648 -22691389 + B3A SINE B2 1 180 -18 6 1552 771 268 69 20 chr6 126825700 126825902 -22691135 + B4 SINE B4 81 292 0 6 1552 229 370 9 44 chr6 126826672 126826785 -22690252 - MIR SINE MIR -33 229 121 6 1552 198 0 0 0 chr6 126826921 126826943 -22690094 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1552 428 175 12 36 chr6 126827612 126827695 -22689342 + ID4_ SINE ID 2 82 -1 6 1552 1353 102 0 16 chr6 126827776 126827965 -22689072 + B2_Mm2 SINE B2 2 187 -8 6 1552 482 271 68 0 chr6 126828065 126828183 -22688854 + ID_B1 SINE B4 87 212 -12 6 1552 182 37 0 36 chr6 126828184 126828212 -22688825 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1552 293 254 15 0 chr6 126828375 126828442 -22688595 - ID4 SINE ID -11 72 5 6 1552 243 306 42 14 chr6 126828455 126828537 -22688500 - B1F2 SINE Alu -52 95 11 6 1552 208 348 29 0 chr6 126828607 126828676 -22688361 - L3 LINE CR1 -228 4261 4191 6 1552 297 0 0 0 chr6 126828925 126828958 -22688079 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1552 292 318 88 52 chr6 126828962 126829098 -22687939 - L3 LINE CR1 -673 3816 3676 6 1552 669 200 40 0 chr6 126831316 126831441 -22685596 - B1_Mur2 SINE Alu -19 130 1 6 1552 1266 252 72 64 chr6 126833053 126833518 -22683519 + RMER15 LTR ERVL 41 575 0 6 1552 321 303 58 6 chr6 126834979 126835135 -22681902 + Charlie2b DNA MER1_type 2588 2751 -31 6 1552 1245 21 14 0 chr6 126835660 126835805 -22681232 + B1_Mm SINE Alu 1 147 0 6 1552 378 121 0 0 chr6 126835805 126835871 -22681166 + (A)n Simple_repeat Simple_repeat 1 66 0 6 1552 301 239 0 129 chr6 126835952 126836053 -22680984 + PB1D10 SINE Alu 9 96 -21 6 1552 1210 34 0 20 chr6 126837187 126837336 -22679701 + B1_Mus1 SINE Alu 3 148 0 6 1552 763 92 0 78 chr6 126837371 126837512 -22679525 + Lx LINE L1 6524 6653 -1 6 1552 207 0 0 0 chr6 126837580 126837603 -22679434 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 6 1552 301 247 22 45 chr6 126838312 126838401 -22678636 + ORR1E LTR MaLR 273 359 0 6 1552 414 0 0 0 chr6 126838724 126838770 -22678267 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 6 1552 242 319 106 49 chr6 126838991 126839133 -22677904 - L2b LINE L2 -2 3373 3224 6 1552 570 285 0 7 chr6 126839134 126839279 -22677758 + ID_B1 SINE B4 79 222 -2 6 1552 323 225 44 22 chr6 126839666 126839757 -22677280 - ID_B1 SINE B4 -9 215 123 6 1552 243 320 20 10 chr6 126842804 126842902 -22674135 + MIR3 SINE MIR 88 186 -22 6 1552 291 54 0 0 chr6 126843389 126843426 -22673611 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1552 266 237 115 31 chr6 126843838 126843934 -22673103 + MER5A1 DNA MER1_type 60 163 -3 6 1552 414 0 0 0 chr6 126845280 126845326 -22671711 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1552 3075 59 15 8 chr6 126845345 126845738 -22671299 - MTA_Mm LTR MaLR 0 396 1 6 1552 991 191 5 29 chr6 126845777 126845982 -22671055 - B3 SINE B2 -9 207 8 6 1552 1188 96 47 19 chr6 126846363 126846522 -22670515 + ORR1A2 LTR MaLR 109 272 -55 6 1552 1197 69 0 0 chr6 126846522 126846667 -22670370 + B1_Mus2 SINE Alu 1 145 -2 6 1552 280 0 50 0 chr6 126846671 126846711 -22670326 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 1552 1188 96 47 19 chr6 126846711 126846759 -22670278 + ORR1A2 LTR MaLR 273 325 -2 6 1552 399 290 101 30 chr6 126846910 126847109 -22669928 + MER76 LTR ERVL 452 664 -27 6 1552 1100 261 63 26 chr6 126847616 126847966 -22669071 + MTEb LTR MaLR 4 366 -13 6 1552 1386 115 5 0 chr6 126848103 126848295 -22668742 + B2_Mm1t SINE B2 1 193 0 6 1552 448 320 34 17 chr6 126848314 126848489 -22668548 + B3A SINE B2 1 178 -20 6 1552 1193 34 7 7 chr6 126848660 126848807 -22668230 + B1_Mm SINE Alu 1 147 0 6 1552 259 275 0 0 chr6 126850050 126850141 -22666896 + (TGAA)n Simple_repeat Simple_repeat 3 93 0 6 1552 208 289 50 15 chr6 126851657 126851770 -22665267 + MIRb SINE MIR 120 236 -32 6 1552 998 150 0 11 chr6 126851903 126852085 -22664952 + GA-rich Low_complexity Low_complexity 1 180 0 6 1552 966 9 0 0 chr6 126852168 126852279 -22664758 + (GAA)n Simple_repeat Simple_repeat 1 111 0 6 1552 24927 25 0 1 chr6 126852372 126855270 -22661767 + L1Md_T LINE L1 2693 5586 -297 6 1552 9174 5 0 0 chr6 126855270 126856291 -22660746 + L1Md_T LINE L1 5587 6582 0 6 1552 303 302 90 48 chr6 126856337 126856504 -22660533 + L1MC3 LINE L1 6455 6628 -1157 6 1552 456 19 0 0 chr6 126856504 126856557 -22660480 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1552 225 0 0 0 chr6 126856558 126856583 -22660454 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1552 513 0 0 0 chr6 126856583 126856639 -22660398 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1552 566 153 0 9 chr6 126857474 126857586 -22659451 + CT-rich Low_complexity Low_complexity 1 111 0 6 1552 504 0 0 0 chr6 126858418 126858474 -22658563 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1552 1343 291 80 39 chr6 126858707 126859412 -22657625 + L1MC2 LINE L1 5552 6250 -94 6 1552 317 321 104 49 chr6 126859482 126859911 -22657126 + L1M5 LINE L1 5262 5710 -463 6 1552 250 349 58 36 chr6 126860143 126860280 -22656757 + MIRb SINE MIR 61 200 -68 6 1552 1248 109 0 0 chr6 126861185 126861360 -22655677 - B2_Mm2 SINE B2 -19 176 2 6 1552 721 234 6 6 chr6 126861362 126861519 -22655518 - ID_B1 SINE B4 0 224 71 6 1552 28 29 0 0 chr6 126861543 126861578 -22655459 + AT_rich Low_complexity Low_complexity 1 35 0 6 1552 588 211 179 104 chr6 126861579 126861780 -22655257 - B3 SINE B2 0 216 1 6 1552 386 228 202 64 chr6 126861795 126861816 -22655221 - B3A SINE B2 0 198 183 6 1552 192 77 0 0 chr6 126861816 126861842 -22655195 + (ATGGTG)n Simple_repeat Simple_repeat 1 26 0 6 1552 386 228 202 64 chr6 126861842 126861993 -22655044 - B3A SINE B2 -16 182 2 6 1552 552 265 0 29 chr6 126862382 126862522 -22654515 - B1F SINE Alu -2 147 12 6 1552 473 230 46 25 chr6 126863478 126863613 -22653424 - ID_B1 SINE B4 -13 211 81 6 1552 1085 181 20 5 chr6 126863661 126863861 -22653176 - B3 SINE B2 -5 211 9 6 1552 422 290 111 28 chr6 126863909 126864090 -22652947 - B3A SINE B2 -1 197 2 6 1552 486 0 0 0 chr6 126864107 126864161 -22652876 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1552 249 235 0 0 chr6 126864193 126864244 -22652793 - B4A SINE B4 -18 274 224 6 1552 1064 56 0 14 chr6 126864354 126864499 -22652538 + (TTTC)n Simple_repeat Simple_repeat 4 146 0 6 1552 381 280 0 11 chr6 126864500 126864594 -22652443 - ID_B1 SINE B4 -9 215 123 6 1552 180 250 0 0 chr6 126864772 126864816 -22652221 + MIR SINE MIR 105 148 -60 6 1552 579 296 127 27 chr6 126864917 126865177 -22651860 - MTEa LTR MaLR -49 330 45 6 1552 517 286 79 6 chr6 126865232 126865397 -22651640 - MTE-int LTR MaLR -3 1577 1401 6 1552 537 235 45 0 chr6 126866044 126866176 -22650861 + MTEa LTR MaLR 3 140 -239 6 1552 219 139 0 0 chr6 126866402 126866438 -22650599 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1552 369 233 178 0 chr6 126866452 126866542 -22650495 + PB1D10 SINE Alu 3 108 -9 6 1552 351 171 0 0 chr6 126866542 126866618 -22650419 + (TGG)n Simple_repeat Simple_repeat 2 77 0 6 1552 387 273 54 18 chr6 126867699 126867811 -22649226 + PB1D10 SINE Alu 2 117 0 6 1552 357 138 0 0 chr6 126867917 126867997 -22649040 + (CAGA)n Simple_repeat Simple_repeat 4 83 0 6 1552 285 250 14 0 chr6 126868919 126868991 -22648046 + MIR3 SINE MIR 109 181 -27 6 1552 404 19 19 0 chr6 126869027 126869080 -22647957 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1552 32 95 0 0 chr6 126869327 126869422 -22647615 + AT_rich Low_complexity Low_complexity 1 95 0 6 1552 330 202 152 71 chr6 126870955 126871067 -22645970 - B1F2 SINE Alu -16 133 13 6 1552 220 122 0 24 chr6 126871414 126871456 -22645581 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1552 496 215 131 8 chr6 126872383 126872505 -22644532 - B1_Mur1 SINE Alu -9 140 4 6 1552 813 227 13 22 chr6 126872793 126873003 -22644034 - B3A SINE B2 -4 212 1 6 1552 390 145 31 48 chr6 126873128 126873243 -22643794 + PB1D10 SINE Alu 1 126 -1 6 1552 207 319 63 0 chr6 126875152 126875248 -22641789 - MIR SINE MIR -92 116 13 6 1553 534 257 83 46 chr6 126878603 126878819 -22638218 + ORR1E LTR MaLR 92 315 -44 6 1553 845 128 0 34 chr6 126879318 126879464 -22637573 - B1_Mus2 SINE Alu -2 145 5 6 1553 967 62 0 0 chr6 126879592 126879720 -22637317 + B1_Mus1 SINE Alu 21 148 0 6 1553 1193 48 7 0 chr6 126880531 126880676 -22636361 + B1_Mus2 SINE Alu 1 146 -1 6 1553 239 192 19 0 chr6 126880923 126880975 -22636062 + Lx8 LINE L1 7416 7468 -5 6 1553 182 37 37 0 chr6 126881251 126881278 -22635759 + (TTTTTG)n Simple_repeat Simple_repeat 6 33 0 6 1553 1214 62 0 0 chr6 126881278 126881424 -22635613 - B1_Mus2 SINE Alu 0 147 2 6 1553 248 175 238 0 chr6 126881424 126881487 -22635550 - L1ME3 LINE L1 -110 6074 5997 6 1553 971 192 39 5 chr6 126881487 126881691 -22635346 + MTD LTR MaLR 1 211 -208 6 1553 241 268 39 47 chr6 126882656 126882785 -22634252 - RMER17C LTR ERVK -103 307 180 6 1553 1028 175 87 0 chr6 126882800 126883006 -22634031 + MTD LTR MaLR 196 419 0 6 1553 614 313 145 25 chr6 126883025 126883582 -22633455 - L1ME3 LINE L1 -172 5990 5367 6 1553 25 31 0 0 chr6 126884868 126884900 -22632137 + AT_rich Low_complexity Low_complexity 1 32 0 6 1553 218 274 0 0 chr6 126885670 126885721 -22631316 + ID4_ SINE ID 3 53 -30 6 1553 1226 41 0 0 chr6 126886363 126886508 -22630529 - B1_Mm SINE Alu 0 147 3 6 1553 661 234 30 34 chr6 126886546 126886751 -22630286 + B3A SINE B2 9 213 -3 7 1553 452 333 30 49 chr6 126887321 126887485 -22629552 - B3A SINE B2 -24 174 14 7 1553 1162 88 141 0 chr6 126888151 126888321 -22628716 + B2_Mm2 SINE B2 2 195 0 7 1553 203 0 37 0 chr6 126888348 126888375 -22628662 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1553 230 277 84 67 chr6 126888419 126888597 -22628440 + L2 LINE L2 2742 2922 -497 7 1553 276 273 0 13 chr6 126888922 126889000 -22628037 - ID4_ SINE ID -3 80 4 7 1553 203 167 0 0 chr6 126890469 126890511 -22626526 + (GTTTG)n Simple_repeat Simple_repeat 4 45 0 7 1553 2424 303 73 13 chr6 126890545 126891452 -22625585 - Lx8 LINE L1 -187 7286 6326 7 1553 543 118 0 0 chr6 126891455 126891540 -22625497 + (TA)n Simple_repeat Simple_repeat 1 85 0 7 1553 381 287 76 101 chr6 126892030 126892204 -22624833 + ID_B1 SINE B4 70 243 -49 7 1553 1278 278 104 82 chr6 126892585 126893362 -22623675 + RCHARR1 DNA MER1_type 1 794 -180 7 1553 224 111 22 0 chr6 126893423 126893468 -22623569 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1553 581 278 115 37 chr6 126893541 126893810 -22623227 - B4A SINE B4 0 292 3 7 1553 295 215 94 100 chr6 126893811 126893923 -22623114 + RCHARR1 DNA MER1_type 789 903 -71 7 1553 1105 239 124 8 chr6 126893923 126894295 -22622742 - MTD LTR MaLR 0 419 5 7 1553 295 215 94 100 chr6 126894295 126894342 -22622695 + RCHARR1 DNA MER1_type 904 947 -27 7 1553 27 0 0 0 chr6 126894561 126894588 -22622449 + AT_rich Low_complexity Low_complexity 1 27 0 7 1553 578 248 60 0 chr6 126894613 126894730 -22622307 - RSINE1 SINE B4 -6 159 36 7 1553 270 0 0 0 chr6 126895134 126895164 -22621873 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1553 278 284 91 0 chr6 126895169 126895257 -22621780 - RSINE1 SINE B4 -4 161 66 7 1553 2086 189 34 5 chr6 126895672 126896081 -22620956 + MTC LTR MaLR 1 421 0 7 1553 270 339 118 0 chr6 126896771 126896898 -22620139 - MIRb SINE MIR -43 225 84 7 1553 26 0 0 0 chr6 126897531 126897557 -22619480 + AT_rich Low_complexity Low_complexity 1 26 0 7 1553 493 329 91 5 chr6 126897604 126897824 -22619213 + MER2 DNA MER2_type 18 256 -89 7 1553 207 0 0 0 chr6 126898128 126898151 -22618886 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1553 269 241 172 0 chr6 126898594 126898681 -22618356 + PB1D10 SINE Alu 9 110 -7 7 1553 216 214 18 0 chr6 126898893 126898949 -22618088 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 7 1553 378 0 0 0 chr6 126898984 126899026 -22618011 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1553 539 282 36 21 chr6 126899032 126899224 -22617813 - B4A SINE B4 -14 278 84 7 1553 378 288 79 53 chr6 126899308 126899535 -22617502 - L1ME3A LINE L1 -3 6170 5938 7 1553 191 36 0 35 chr6 126900250 126900279 -22616758 + (CCCCCT)n Simple_repeat Simple_repeat 4 31 0 7 1553 642 178 29 16 chr6 126900578 126900765 -22616272 - B3 SINE B2 0 198 2 7 1553 532 274 8 0 chr6 126900776 126900900 -22616137 - B1F1 SINE Alu -6 143 19 7 1553 2795 141 68 2 chr6 126901923 126902412 -22614625 - RLTR28 LTR ERVL -3 521 1 7 1553 269 326 21 8 chr6 126902907 126903025 -22614012 - B1F2 SINE Alu 0 117 2 7 1553 446 213 172 0 chr6 126903072 126903194 -22613843 + B1_Mur1 SINE Alu 1 143 -6 7 1553 268 243 124 35 chr6 126903300 126903445 -22613592 - L1MCc LINE L1 -5272 1151 994 7 1553 228 143 0 0 chr6 126904114 126904156 -22612881 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1553 398 263 70 32 chr6 126904159 126904316 -22612721 - RSINE1 SINE B4 0 165 3 7 1553 382 244 11 11 chr6 126905402 126905493 -22611544 - PB1D7 SINE Alu -7 113 23 7 1553 305 140 18 0 chr6 126906120 126906177 -22610860 + CT-rich Low_complexity Low_complexity 2 59 0 7 1553 405 39 0 0 chr6 126906488 126906539 -22610498 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1553 273 177 47 81 chr6 126906698 126906784 -22610253 - ORR1D1 LTR MaLR -291 83 1 7 1553 328 326 75 0 chr6 126906896 126907043 -22609994 - L1MA9 LINE L1 -203 6088 5931 7 1553 724 297 367 3 chr6 126907163 126907463 -22609574 - Tigger7 DNA MER2_type -2082 409 1 7 1553 485 216 45 0 chr6 126908251 126908362 -22608675 - B1F SINE Alu 0 149 34 7 1553 686 254 76 11 chr6 126908661 126908924 -22608113 - Lx9 LINE L1 0 7644 7365 7 1553 581 236 53 26 chr6 126913981 126914010 -22603027 - RSINE1 SINE B4 -2 163 132 7 1553 377 81 16 0 chr6 126914010 126914072 -22602965 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1553 581 236 53 26 chr6 126914072 126914194 -22602843 - RSINE1 SINE B4 -34 131 8 7 1553 1216 61 0 0 chr6 126914226 126914374 -22602663 + B1_Mus1 SINE Alu 1 148 0 7 1553 2631 184 91 21 chr6 126914501 126915029 -22602008 - RMER1C Other Other 0 1342 778 7 1553 1373 100 5 0 chr6 126917511 126917701 -22599336 - B2_Mm1a SINE B2 -2 191 1 7 1553 448 219 90 38 chr6 126918105 126918238 -22598799 - B1F1 SINE Alu -1 148 9 7 1553 2507 163 10 0 chr6 126918311 126918728 -22598309 - MTC LTR MaLR 0 421 1 7 1553 254 310 35 0 chr6 126919917 126920004 -22597033 - L1ME3A LINE L1 -75 6098 6009 7 1553 340 305 11 0 chr6 126920072 126920167 -22596870 + RSINE1 SINE B4 11 106 -59 7 1553 234 338 26 7 chr6 126920263 126920418 -22596619 - L1ME3A LINE L1 -291 5882 5725 7 1553 316 337 90 6 chr6 126920522 126920689 -22596348 - L1ME3A LINE L1 -433 5729 5549 7 1553 326 277 0 114 chr6 126920718 126920751 -22596286 + B1F SINE Alu 1 21 -128 7 1553 1708 31 0 0 chr6 126920751 126920944 -22596093 + B2_Mm1a SINE B2 1 193 0 7 1553 459 205 0 0 chr6 126920944 126921027 -22596010 + PB1D9 SINE Alu 22 104 -16 7 1553 22 0 0 0 chr6 126921095 126921117 -22595920 + AT_rich Low_complexity Low_complexity 1 22 0 7 1553 275 355 0 61 chr6 126921215 126921347 -22595690 + ID_B1 SINE B4 49 172 -52 7 1553 426 255 10 10 chr6 126921269 126921372 -22595665 + PB1D7 SINE Alu 18 120 0 7 1553 188 0 74 0 chr6 126921870 126921897 -22595140 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 7 1553 1135 174 35 10 chr6 126921897 126922095 -22594942 - B3 SINE B2 -13 203 1 7 1553 436 259 96 5 chr6 126922699 126922897 -22594140 + Charlie1b DNA MER1_type 306 521 -2 7 1553 997 244 108 12 chr6 126923819 126924143 -22592894 - MTEb LTR MaLR -3 376 22 7 1553 363 96 0 0 chr6 126925732 126925784 -22591253 + (T)n Simple_repeat Simple_repeat 1 52 0 7 1553 1198 48 0 0 chr6 126925784 126925930 -22591107 - B1_Mus2 SINE Alu 0 147 2 7 1553 944 249 26 32 chr6 126926756 126927100 -22589937 + RLTR15 LTR ERVK 1 342 -17 7 1553 225 0 0 0 chr6 126927702 126927727 -22589310 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1553 374 247 167 64 chr6 126929128 126929392 -22587645 + B4A SINE B4 1 291 -1 7 1553 405 136 0 0 chr6 126929395 126929461 -22587576 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1553 1275 214 92 0 chr6 126929568 126929872 -22587165 + MTD LTR MaLR 1 332 -87 7 1553 1270 291 71 62 chr6 126929945 126930491 -22586546 - MER82 DNA MER2_type -97 556 6 7 1553 1626 136 128 35 chr6 126930534 126930878 -22586159 - ORR1C1 LTR MaLR -2 376 1 7 1553 398 241 151 38 chr6 126931124 126931348 -22585689 + MIR SINE MIR 28 267 -1 7 1553 184 179 0 43 chr6 126931348 126931418 -22585619 + CT-rich Low_complexity Low_complexity 4 70 0 7 1553 215 61 30 0 chr6 126932350 126932383 -22584654 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1553 332 299 31 0 chr6 126932387 126932484 -22584553 - PB1D10 SINE Alu -17 100 1 7 1553 312 183 13 66 chr6 126933164 126933240 -22583797 - ID4 SINE ID -9 74 3 7 1553 504 0 0 0 chr6 126933938 126933994 -22583043 + (TTA)n Simple_repeat Simple_repeat 2 57 0 7 1553 240 337 118 24 chr6 126934378 126934548 -22582489 + MIRc SINE MIR 65 250 -18 7 1553 1634 288 94 26 chr6 126935497 126936271 -22580766 + L1_Rod LINE L1 4836 5662 -185 7 1553 603 249 64 32 chr6 126936274 126936461 -22580576 + Lx6 LINE L1 7259 7451 -9 7 1553 798 236 59 5 chr6 126937820 126938024 -22579013 - B3 SINE B2 0 216 2 7 1553 439 145 0 13 chr6 126939117 126939194 -22577843 + B1_Mur2 SINE Alu 74 149 0 7 1553 237 244 67 0 chr6 126939905 126939995 -22577042 + MIR SINE MIR 138 233 -29 7 1553 2093 152 70 0 chr6 126940011 126940398 -22576639 + MTC LTR MaLR 1 414 -7 7 1553 693 184 25 12 chr6 126940398 126940558 -22576479 + MTC-int LTR MaLR 2 163 -1095 7 1553 333 222 14 0 chr6 126941225 126941297 -22575740 + MTEa LTR MaLR 1 73 -306 7 1553 2329 91 73 6 chr6 126941636 126942051 -22574986 + MusHAL1 LINE L1 1764 2285 -427 7 1553 7934 99 16 4 chr6 126942047 126943648 -22573389 + Lx LINE L1 5027 6647 -7 7 1553 862 232 78 176 chr6 126943649 126944150 -22572887 - L1MA8 LINE L1 -5 6286 5835 7 1553 1401 239 84 23 chr6 126944155 126944498 -22572539 + ORR1D2 LTR MaLR 1 364 -6 7 1553 847 214 99 4 chr6 126944506 126944759 -22572278 - L1MA8 LINE L1 -478 5822 5546 7 1553 548 238 69 15 chr6 126944751 126944954 -22572083 - L1M2 LINE L1 -1505 4375 4192 7 1553 2345 92 6 58 chr6 126945146 126945491 -22571546 + ORR1A2 LTR MaLR 1 327 0 7 1553 423 0 0 0 chr6 126946703 126946750 -22570287 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1553 557 330 39 15 chr6 126947084 126947290 -22569747 - MER58A DNA MER1_type -2 222 12 7 1553 756 352 85 60 chr6 126947613 126948145 -22568892 - MLT1F LTR MaLR -2 546 2 7 1553 242 235 30 141 chr6 126948202 126948301 -22568736 - MLT1D LTR MaLR -417 88 1 7 1553 468 0 0 0 chr6 126948432 126948484 -22568553 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1553 851 250 11 0 chr6 126948488 126948668 -22568369 - B3A SINE B2 -16 182 1 7 1553 250 288 62 0 chr6 126948668 126948807 -22568230 - L1M4 LINE L1 -1348 4798 4652 7 1553 753 50 71 7 chr6 126948846 126948986 -22568051 - RMER17B LTR ERVK -498 460 312 8 1553 338 320 47 0 chr6 126948987 126949115 -22567922 - L1MB7 LINE L1 -4 6180 6047 8 1553 189 0 0 0 chr6 126949149 126949170 -22567867 + (TA)n Simple_repeat Simple_repeat 2 22 0 8 1553 298 307 118 79 chr6 126949184 126949336 -22567701 - RSINE1 SINE B4 0 165 8 8 1553 816 283 98 60 chr6 126949340 126950059 -22566978 - L1MB7 LINE L1 -108 6076 5327 8 1553 333 295 76 0 chr6 126950262 126950367 -22566670 - PB1 SINE Alu -10 117 5 8 1553 316 233 14 0 chr6 126950373 126950446 -22566591 - L1MB7 LINE L1 -947 5199 5126 8 1553 301 287 66 9 chr6 126950429 126950560 -22566477 - L1MB7 LINE L1 -1144 5002 4861 8 1553 570 298 124 74 chr6 126950563 126950724 -22566313 - L1MC1 LINE L1 -136 6197 6021 8 1553 321 89 0 0 chr6 126950724 126950769 -22566268 + (GTCTG)n Simple_repeat Simple_repeat 2 46 0 8 1553 570 284 111 52 chr6 126950769 126951268 -22565769 - L1MC1 LINE L1 -313 6020 5433 8 1553 480 285 68 59 chr6 126951294 126951514 -22565523 - L1MC1 LINE L1 -1601 4545 4324 8 1553 514 261 8 30 chr6 126951517 126951651 -22565386 + RSINE1 SINE B4 3 133 -32 8 1553 1410 258 35 6 chr6 126951651 126951990 -22565047 + Lx5 LINE L1 6702 7050 0 8 1553 1052 197 34 5 chr6 126951998 126952207 -22564830 + B3 SINE B2 2 216 0 8 1553 683 284 150 65 chr6 126952207 126952775 -22564262 + L1M2 LINE L1 3031 3646 -2497 8 1553 411 171 0 0 chr6 126952920 126952996 -22564041 + CT-rich Low_complexity Low_complexity 4 79 0 8 1553 1047 269 29 13 chr6 126953096 126953236 -22563801 + Lx7 LINE L1 5591 5740 -1904 8 1553 309 20 19 39 chr6 126953236 126953288 -22563749 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 8 1553 1047 269 35 18 chr6 126953288 126953499 -22563538 + Lx7 LINE L1 5739 5951 -1693 8 1553 1640 141 186 7 chr6 126953551 126953858 -22563179 + ORR1B1 LTR MaLR 1 362 -32 8 1553 3549 215 113 10 chr6 126953923 126954814 -22562223 + ORR1B1-int LTR MaLR 1 983 -526 8 1553 312 292 0 0 chr6 126954824 126954896 -22562141 - RMER15-int LTR ERVL -736 4263 4192 8 1553 625 249 75 40 chr6 126954916 126955111 -22561926 - MTD LTR MaLR -7 412 183 8 1553 279 303 18 27 chr6 126955112 126955224 -22561813 + Lx8 LINE L1 7069 7179 -294 8 1553 2091 163 44 0 chr6 126955585 126955947 -22561090 - ORR1C1 LTR MaLR 0 378 1 8 1553 207 0 0 0 chr6 126956002 126956025 -22561012 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1553 736 248 23 134 chr6 126956098 126956405 -22560632 - B4A SINE B4 -18 274 2 8 1553 486 0 0 0 chr6 126956442 126956496 -22560541 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 8 1553 6107 36 3 4 chr6 126957498 126958226 -22558811 - L1Md_F3 LINE L1 -13 6571 5845 8 1553 1676 302 26 33 chr6 126958712 126959285 -22557752 - Lx8 LINE L1 -15 7458 6887 8 1553 320 0 25 0 chr6 126959285 126959325 -22557712 + (TTA)n Simple_repeat Simple_repeat 2 42 0 8 1553 1150 79 0 0 chr6 126959325 126959465 -22557572 - B1_Mus1 SINE Alu -8 140 1 8 1553 1676 302 26 33 chr6 126959465 126959500 -22557537 - Lx8 LINE L1 -587 6886 6854 8 1553 214 262 0 15 chr6 126960090 126960156 -22556881 + GA-rich Low_complexity Low_complexity 2 66 0 8 1553 387 0 0 0 chr6 126961540 126961583 -22555454 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 1553 477 0 0 0 chr6 126962569 126962622 -22554415 + (TAA)n Simple_repeat Simple_repeat 2 54 0 8 1553 416 286 51 29 chr6 126962627 126962764 -22554273 - MIRb SINE MIR -104 164 25 8 1553 431 297 78 71 chr6 126962936 126963250 -22553787 - ORR1E LTR MaLR -2 377 43 8 1553 800 253 0 37 chr6 126964027 126964216 -22552821 + B3A SINE B2 1 182 -16 8 1553 198 71 0 0 chr6 126964216 126964244 -22552793 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1553 419 276 169 20 chr6 126964352 126964500 -22552537 + ID_B1 SINE B4 12 181 -43 8 1553 271 309 72 78 chr6 126964592 126964738 -22552299 + MIR SINE MIR 6 155 -107 8 1553 371 148 11 0 chr6 126966529 126966617 -22550420 + (TG)n Simple_repeat Simple_repeat 1 89 0 8 1553 369 247 0 13 chr6 126966617 126966695 -22550342 - ID4_ SINE ID -6 77 1 8 1553 294 294 59 0 chr6 126967224 126967309 -22549728 - Arthur1A DNA Tip100 -87 90 1 8 1553 201 139 47 0 chr6 126968413 126968456 -22548581 + T-rich Low_complexity Low_complexity 1 45 0 8 1553 432 0 0 0 chr6 126968487 126968535 -22548502 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1553 848 273 97 52 chr6 126971191 126971500 -22545537 - MER2 DNA MER2_type -6 339 17 8 1553 882 164 87 31 chr6 126972138 126972333 -22544704 - B3 SINE B2 -2 214 9 8 1553 405 0 0 0 chr6 126972960 126973005 -22544032 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1553 454 192 83 8 chr6 126973820 126973941 -22543096 - Lx4B LINE L1 0 7058 6929 8 1553 503 96 0 12 chr6 126976137 126976221 -22540816 + (TTCC)n Simple_repeat Simple_repeat 4 86 0 8 1553 621 264 84 6 chr6 126976816 126976995 -22540042 + B3 SINE B2 1 193 -23 8 1553 520 255 215 0 chr6 126978606 126978782 -22538255 + B3 SINE B2 1 214 -2 8 1553 254 381 73 43 chr6 126979376 126979773 -22537264 - L2b LINE L2 0 3375 2967 8 1553 798 127 0 0 chr6 126979940 126980066 -22536971 + (TA)n Simple_repeat Simple_repeat 2 127 0 8 1553 641 248 0 0 chr6 126980086 126980219 -22536818 + ORR1D1 LTR MaLR 1 133 -241 8 1553 216 80 58 39 chr6 126980750 126980802 -22536235 + (CCCTA)n Simple_repeat Simple_repeat 3 55 0 8 1553 372 221 95 0 chr6 126980819 126980914 -22536123 - PB1D7 SINE Alu -16 104 1 8 1553 2907 89 39 0 chr6 126981114 126981495 -22535542 - MTA_Mm LTR MaLR 0 396 1 8 1553 750 292 108 52 chr6 126981732 126982075 -22534962 - MLT1B LTR MaLR 0 390 29 8 1553 636 305 39 5 chr6 126982280 126982484 -22534553 + MER20 DNA MER1_type 8 218 -1 8 1553 226 231 60 90 chr6 126982799 126982899 -22534138 + RLTR22_Mur LTR ERVK 1101 1197 -651 8 1553 817 216 160 0 chr6 126982938 126983119 -22533918 - B3 SINE B2 -4 212 3 8 1553 268 302 36 36 chr6 126983186 126983296 -22533741 + ORR1E LTR MaLR 1 110 -249 8 1553 289 288 0 0 chr6 126983304 126983370 -22533667 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 8 1553 771 190 44 24 chr6 126983551 126983732 -22533305 + B3 SINE B2 1 190 -5 8 1553 461 343 68 10 chr6 126983908 126984114 -22532923 - LTR78 LTR ERV1 -14 1290 1073 8 1553 480 262 243 47 chr6 126985659 126985984 -22531053 + MTD LTR MaLR 1 389 -30 8 1553 258 95 0 0 chr6 126985987 126986029 -22531008 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 8 1553 367 208 13 13 chr6 126986072 126986150 -22530887 - RCHARR1 DNA MER1_type -149 825 748 8 1553 1049 287 81 61 chr6 126986147 126986603 -22530434 - RCHARR1 DNA MER1_type -505 469 5 8 1553 387 0 0 0 chr6 126987109 126987152 -22529885 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1553 300 205 129 76 chr6 126987465 126987597 -22529440 - RLTR13D3 LTR ERVK -33 1081 943 8 1553 7299 63 20 21 chr6 126987927 126989143 -22527894 - L1Md_F2 LINE L1 0 6582 5380 8 1553 290 235 148 0 chr6 126989402 126989483 -22527554 - RLTR13D3 LTR ERVK -1021 93 1 8 1553 281 310 228 13 chr6 126989519 126989751 -22527286 + MER20B DNA MER1_type 137 418 -365 8 1553 288 121 72 0 chr6 126989785 126989868 -22527169 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 8 1553 278 315 33 0 chr6 126990027 126990119 -22526918 - PB1D10 SINE Alu -10 107 13 8 1553 271 279 53 18 chr6 126990234 126990347 -22526690 + MER20B DNA MER1_type 667 783 0 8 1553 482 323 47 33 chr6 126991615 126991890 -22525147 - L1MB3 LINE L1 -65 6118 5840 8 1553 779 264 0 0 chr6 126992313 126992468 -22524569 - RSINE1 SINE B4 -7 158 4 8 1553 630 245 75 27 chr6 126992752 126992899 -22524138 + B3A SINE B2 1 154 -44 8 1553 411 56 0 0 chr6 126992899 126992953 -22524084 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1553 862 170 0 0 chr6 126992971 126993106 -22523931 + B1_Mur2 SINE Alu 1 135 -14 8 1553 1209 54 28 7 chr6 126993109 126993395 -22523642 + (GAAA)n Simple_repeat Simple_repeat 1 292 0 8 1553 633 165 14 14 chr6 126993397 126993538 -22523499 + GA-rich Low_complexity Low_complexity 3 143 0 8 1553 429 54 0 0 chr6 126994222 126994278 -22522759 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 8 1553 539 328 16 32 chr6 126995618 126995807 -22521230 + MIR SINE MIR 9 194 -68 8 1553 377 152 11 92 chr6 126996203 126996290 -22520747 + ID4 SINE ID 1 80 -3 8 1553 243 325 0 57 chr6 126996448 126996536 -22520501 + MIR SINE MIR 39 121 -87 8 1553 872 155 231 6 chr6 126996677 126996846 -22520191 + B3 SINE B2 1 207 -9 8 1553 2305 179 44 5 chr6 126998372 126998777 -22518260 + MTC LTR MaLR 1 421 0 8 1553 666 68 0 0 chr6 126999413 126999501 -22517536 + (TCTCCC)n Simple_repeat Simple_repeat 4 91 0 8 1553 462 318 83 104 chr6 127000001 127000338 -22516699 + ORR1E LTR MaLR 25 354 -5 1 1553 665 255 109 0 chr6 127002414 127002606 -22514431 - B3 SINE B2 -2 214 2 2 1553 756 234 13 0 chr6 127002958 127003112 -22513925 + B3A SINE B2 2 157 -41 3 1553 432 0 0 0 chr6 127003118 127003166 -22513871 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1553 245 283 6 50 chr6 127003431 127003551 -22513486 + MIR3 SINE MIR 64 177 -31 5 1553 217 275 88 0 chr6 127004122 127004202 -22512835 - PB1D9 SINE Alu 0 120 34 6 1553 1840 195 98 18 chr6 127004415 127004801 -22512236 + MTD LTR MaLR 3 419 0 7 1553 24 0 0 0 chr6 127004902 127004926 -22512111 + GC_rich Low_complexity Low_complexity 1 24 0 8 1553 565 319 93 68 chr6 127004927 127005280 -22511757 + MLT1A0 LTR MaLR 4 365 0 9 1553 315 246 124 51 chr6 127006099 127006236 -22510801 - MLT1L LTR MaLR -311 299 153 1 1553 604 299 133 41 chr6 127006271 127006707 -22510330 + Charlie1b DNA MER1_type 47 522 -1 1 1553 656 259 7 7 chr6 127006819 127006967 -22510070 + B1_Mur1 SINE Alu 1 148 -1 1 1553 228 143 90 103 chr6 127007009 127007087 -22509950 + MamGypLTR1b LTR Gypsy 701 777 -5 1 1553 778 301 54 0 chr6 127007208 127007447 -22509590 + L1M5 LINE L1 5527 5778 -346 1 1553 433 237 335 20 chr6 127007621 127007836 -22509201 + MTEb LTR MaLR 1 283 -96 1 1553 372 219 101 180 chr6 127007838 127007963 -22509074 + B4A SINE B4 99 226 -66 1 1553 574 161 503 14 chr6 127007963 127008108 -22508929 + B3 SINE B2 1 216 0 1 1553 372 219 101 180 chr6 127008108 127008171 -22508866 + B4A SINE B4 227 272 -20 1 1553 603 40 0 0 chr6 127008522 127008596 -22508441 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1553 383 227 0 0 chr6 127008605 127008680 -22508357 - B1F SINE Alu -68 81 7 1 1554 422 239 69 26 chr6 127008849 127008965 -22508072 + B3A SINE B2 1 121 -77 2 1554 202 283 95 32 chr6 127009681 127009776 -22507261 + MIRb SINE MIR 25 125 -143 2 1554 1113 101 0 0 chr6 127010546 127010694 -22506343 + B1_Mus1 SINE Alu 1 148 0 2 1554 207 0 105 0 chr6 127010694 127010732 -22506305 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 2 1554 1068 198 30 5 chr6 127010877 127011075 -22505962 + B3 SINE B2 7 209 -7 2 1554 414 221 34 34 chr6 127011225 127011342 -22505695 - PB1D9 SINE Alu -2 118 2 2 1554 1220 277 28 15 chr6 127011416 127011865 -22505172 - Lx7 LINE L1 -1599 6045 5587 2 1554 197 297 30 30 chr6 127011972 127012038 -22504999 + L2c LINE L2 3271 3336 -51 2 1554 737 264 257 13 chr6 127012101 127012401 -22504636 + MTD LTR MaLR 33 405 -14 2 1554 333 0 0 0 chr6 127012771 127012808 -22504229 + (TAAAA)n Simple_repeat Simple_repeat 1 37 0 2 1554 1132 106 6 6 chr6 127013115 127013295 -22503742 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1554 982 285 15 11 chr6 127013578 127013889 -22503148 + Lx7 LINE L1 5589 5904 -678 3 1554 647 328 52 58 chr6 127013892 127014200 -22502837 + ORR1E LTR MaLR 1 306 -53 3 1554 381 249 18 142 chr6 127014387 127014612 -22502425 - B3A SINE B2 0 198 2 3 1554 546 108 0 0 chr6 127015339 127015422 -22501615 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 1554 1285 154 16 176 chr6 127015497 127015985 -22501052 - RMER17C LTR ERVK 0 410 1 3 1554 229 250 18 0 chr6 127016228 127016284 -22500753 + ORR1E LTR MaLR 361 417 -2 3 1554 399 41 0 0 chr6 127016380 127016429 -22500608 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 3 1554 363 231 101 17 chr6 127016644 127016763 -22500274 + B1F SINE Alu 5 133 -16 3 1554 218 194 0 0 chr6 127016763 127016799 -22500238 + polypurine Low_complexity Low_complexity 1 36 0 3 1554 180 0 0 0 chr6 127017064 127017084 -22499953 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 1554 332 209 9 0 chr6 127017090 127017154 -22499883 - B2_Mm2 SINE B2 -102 114 47 4 1554 1251 95 6 0 chr6 127017190 127017359 -22499678 - B2_Mm1t SINE B2 -22 171 2 4 1554 180 0 0 0 chr6 127017665 127017685 -22499352 + (GGTTG)n Simple_repeat Simple_repeat 5 24 0 4 1554 270 351 13 0 chr6 127017691 127017768 -22499269 - ID4_ SINE ID -4 79 2 4 1554 1054 44 0 0 chr6 127019144 127019279 -22497758 - B2_Mm1a SINE B2 0 193 59 4 1554 1613 286 85 60 chr6 127019463 127019682 -22497355 - Lx8 LINE L1 0 7473 7227 4 1554 183 42 0 0 chr6 127019682 127019706 -22497331 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1554 1613 286 85 60 chr6 127019706 127020029 -22497008 - Lx8 LINE L1 -247 7226 6921 4 1554 977 67 0 7 chr6 127020029 127020164 -22496873 + (TTCTC)n Simple_repeat Simple_repeat 4 137 0 4 1554 1449 70 11 5 chr6 127020164 127020351 -22496686 - B2_Mm2 SINE B2 -6 189 2 4 1554 1613 286 85 60 chr6 127020351 127020453 -22496584 - Lx8 LINE L1 -553 6920 6812 4 1554 239 310 48 72 chr6 127020464 127020589 -22496448 + YREP_Mm Unknown Unknown 173 294 -1518 4 1554 660 246 8 0 chr6 127020477 127020607 -22496430 - ID_B1 SINE B4 -8 216 86 5 1554 24 32 0 0 chr6 127020617 127020648 -22496389 + AT_rich Low_complexity Low_complexity 1 31 0 5 1554 274 240 153 20 chr6 127020898 127020996 -22496041 + MIR SINE MIR 90 200 -62 5 1554 499 230 377 14 chr6 127021187 127021399 -22495638 + B4 SINE B4 4 292 0 5 1554 571 235 8 25 chr6 127021454 127021572 -22495465 + PB1D9 SINE Alu 3 118 -2 5 1554 281 244 84 12 chr6 127021594 127021677 -22495360 + MIRc SINE MIR 142 230 -38 5 1554 270 0 0 0 chr6 127023374 127023404 -22493633 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1554 977 233 24 5 chr6 127024050 127024257 -22492780 + B3 SINE B2 1 211 -5 5 1554 291 85 0 0 chr6 127026388 127026435 -22490602 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 1554 246 32 0 0 chr6 127027215 127027246 -22489791 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1554 1384 75 16 21 chr6 127027631 127027822 -22489215 + B2_Mm2 SINE B2 1 190 -5 6 1554 603 0 0 0 chr6 127028306 127028373 -22488664 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1554 224 233 79 40 chr6 127028395 127028471 -22488566 - B3A SINE B2 -118 80 2 6 1554 218 221 71 83 chr6 127028949 127029033 -22488004 + L2a LINE L2 3312 3394 -32 6 1554 412 303 27 33 chr6 127029328 127029478 -22487559 + ID_B1 SINE B4 76 224 0 6 1554 454 191 18 9 chr6 127029478 127029589 -22487448 + GA-rich Low_complexity Low_complexity 1 112 0 6 1554 253 266 47 0 chr6 127029612 127029676 -22487361 + ID4_ SINE ID 4 70 -13 6 1554 216 156 311 0 chr6 127030688 127030733 -22486304 + B3A SINE B2 62 120 -78 6 1554 285 75 0 0 chr6 127030742 127030782 -22486255 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1554 182 37 37 0 chr6 127031346 127031373 -22485664 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 6 1554 267 104 0 0 chr6 127031442 127031490 -22485547 + (T)n Simple_repeat Simple_repeat 1 48 0 7 1554 1021 236 82 18 chr6 127032888 127033168 -22483869 - RMER15 LTR ERVL 0 575 278 7 1554 245 299 73 97 chr6 127033391 127033650 -22483387 + ORR1D2 LTR MaLR 88 340 -30 7 1554 351 0 0 0 chr6 127033669 127033708 -22483329 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1554 975 70 78 0 chr6 127033708 127033836 -22483201 - B1_Mus2 SINE Alu -9 138 1 7 1554 819 222 50 15 chr6 127034163 127034364 -22482673 + B3 SINE B2 1 208 -8 7 1554 216 244 22 124 chr6 127034384 127034473 -22482564 + B4A SINE B4 2 81 -211 7 1554 659 213 108 18 chr6 127034403 127034570 -22482467 + B3A SINE B2 11 192 -6 7 1554 232 279 0 0 chr6 127035419 127035480 -22481557 - BC1_Mm scRNA scRNA -42 110 50 7 1554 281 264 182 0 chr6 127035729 127035839 -22481198 + L1MC2 LINE L1 6210 6339 -5 7 1554 526 269 99 6 chr6 127037166 127037338 -22479699 - B3A SINE B2 -10 188 1 8 1554 396 0 0 0 chr6 127037356 127037400 -22479637 + (TAA)n Simple_repeat Simple_repeat 2 45 0 8 1554 1254 82 0 23 chr6 127038452 127038626 -22478411 + B2_Mm2 SINE B2 2 171 -24 8 1554 1141 71 0 0 chr6 127038649 127038789 -22478248 - B1_Mus1 SINE Alu -4 144 5 8 1554 244 309 0 14 chr6 127040267 127040336 -22476701 - ID4_ SINE ID -11 72 5 8 1554 207 0 0 0 chr6 127040348 127040371 -22476666 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1554 388 301 39 0 chr6 127040371 127040474 -22476563 - PB1D10 SINE Alu -10 107 1 8 1554 1292 143 10 0 chr6 127040520 127040723 -22476314 + B3 SINE B2 2 206 -10 8 1554 1156 51 0 0 chr6 127040733 127040871 -22476166 + B1_Mus2 SINE Alu 4 141 -6 8 1554 356 68 40 14 chr6 127040873 127040947 -22476090 + (TA)n Simple_repeat Simple_repeat 1 76 0 8 1554 1119 96 0 0 chr6 127040947 127041093 -22475944 - B2_Mm2 SINE B2 -49 146 1 9 1554 207 0 0 0 chr6 127041306 127041329 -22475708 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 9 1554 22 0 0 0 chr6 127041371 127041393 -22475644 + AT_rich Low_complexity Low_complexity 1 22 0 9 1554 279 339 8 45 chr6 127041614 127041747 -22475290 - RMER10B LTR ERVL -23 375 248 9 1554 370 307 171 11 chr6 127042184 127042365 -22474672 - B4A SINE B4 -20 272 63 9 1554 189 0 0 0 chr6 127042417 127042438 -22474599 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1554 591 207 115 8 chr6 127042439 127042561 -22474476 - RSINE1 SINE B4 -26 139 5 9 1554 583 269 0 54 chr6 127043138 127043287 -22473750 + B1F SINE Alu 3 143 -6 9 1554 1175 55 0 14 chr6 127043307 127043455 -22473582 + B1_Mus2 SINE Alu 2 147 0 9 1554 351 0 0 0 chr6 127043817 127043856 -22473181 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1554 1174 42 0 20 chr6 127044039 127044186 -22472851 - B1_Mus2 SINE Alu 0 147 4 1 1554 401 196 54 11 chr6 127044772 127044865 -22472172 + B3 SINE B2 120 216 0 1 1554 412 236 159 9 chr6 127045064 127045119 -22471918 + B3 SINE B2 89 160 -56 1 1554 210 37 0 0 chr6 127045119 127045146 -22471891 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1554 412 236 159 9 chr6 127045146 127045197 -22471840 + B3 SINE B2 161 211 -5 1 1554 234 202 134 37 chr6 127045226 127045308 -22471729 - MTE2b LTR MaLR -95 284 195 1 1554 41213 15 9 0 chr6 127045355 127049890 -22467147 + MERVL-int LTR ERVL 786 5360 -125 1 1554 403 167 46 35 chr6 127049890 127049977 -22467060 + ORR1A3-int LTR MaLR 553 640 -1323 1 1554 319 0 0 0 chr6 127049977 127050015 -22467022 + MERVL-int LTR ERVL 5448 5485 0 1 1554 4519 14 0 0 chr6 127050015 127050508 -22466529 + MT2_Mm LTR ERVL 1 493 0 1 1554 372 268 41 74 chr6 127050509 127050630 -22466407 - MTE2b LTR MaLR -262 117 1 1 1554 590 251 10 91 chr6 127050946 127051143 -22465894 - B3A SINE B2 -16 182 2 1 1554 383 333 30 15 chr6 127051435 127051566 -22465471 - B1F1 SINE Alu -6 143 11 1 1554 235 245 77 94 chr6 127051500 127051617 -22465420 - MT2B2 LTR ERVL -349 235 121 1 1554 298 261 104 35 chr6 127052580 127052695 -22464342 + B4A SINE B4 2 124 -168 1 1554 748 223 113 10 chr6 127052781 127052932 -22464105 + B3 SINE B2 2 163 -53 1 1554 420 71 0 0 chr6 127052932 127052988 -22464049 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1554 748 223 113 10 chr6 127052988 127053031 -22464006 + B3 SINE B2 164 215 -1 1 1554 4113 174 147 21 chr6 127053214 127054121 -22462916 + RLTR25B LTR ERVK 8 1028 0 1 1554 534 185 62 36 chr6 127054121 127054231 -22462806 + B1_Mur4 SINE Alu 38 150 0 1 1554 238 274 32 0 chr6 127054265 127054327 -22462710 + ID2 SINE ID 20 83 0 1 1554 458 248 80 0 chr6 127054728 127054853 -22462184 + B1F SINE Alu 14 148 -1 1 1554 498 221 20 121 chr6 127054863 127055012 -22462025 + ID_B1 SINE B4 91 224 0 1 1554 360 225 208 15 chr6 127055117 127055297 -22461740 + B4A SINE B4 1 241 -51 1 1554 677 149 6 296 chr6 127055298 127055460 -22461577 + B3 SINE B2 80 216 0 1 1554 246 32 0 0 chr6 127055473 127055504 -22461533 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1554 301 278 186 45 chr6 127055739 127055916 -22461121 + B4A SINE B4 1 202 -90 1 1554 426 39 0 0 chr6 127055961 127056013 -22461024 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1554 24 0 0 0 chr6 127056755 127056779 -22460258 + AT_rich Low_complexity Low_complexity 1 24 0 1 1554 751 28 250 0 chr6 127056956 127057064 -22459973 + B1_Mus1 SINE Alu 1 135 -13 1 1554 411 21 0 0 chr6 127057064 127057112 -22459925 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 1554 1124 176 30 5 chr6 127057181 127057381 -22459656 + B3 SINE B2 6 210 -6 1 1554 345 209 255 9 chr6 127057717 127057823 -22459214 - B1F1 SINE Alu -9 140 9 1 1554 1140 70 14 0 chr6 127058063 127058206 -22458831 + B1_Mus1 SINE Alu 4 148 0 1 1554 294 312 0 92 chr6 127060131 127060251 -22456786 + MER31B LTR ERV1 320 428 -38 1 1554 598 232 87 39 chr6 127060295 127060501 -22456536 + B3 SINE B2 1 216 0 1 1554 686 194 30 15 chr6 127061041 127061172 -22455865 + B1F2 SINE Alu 3 135 -14 1 1554 203 0 37 0 chr6 127061172 127061199 -22455838 + (ATG)n Simple_repeat Simple_repeat 2 29 0 1 1554 338 185 0 0 chr6 127061206 127061260 -22455777 + MTC LTR MaLR 1 54 -367 1 1554 1338 118 5 29 chr6 127061261 127061297 -22455740 - ORR1A4 LTR MaLR 0 329 295 1 1554 3615 137 53 27 chr6 127061297 127061883 -22455154 + MT2B LTR ERVL 1 601 0 1 1554 1338 118 5 29 chr6 127061883 127062055 -22454982 - ORR1A4 LTR MaLR -35 294 126 1 1554 896 151 0 95 chr6 127062060 127062228 -22454809 + MT2B LTR ERVL 174 325 -276 1 1554 582 79 30 11 chr6 127062243 127062339 -22454698 - MT2B2 LTR ERVL -56 528 343 1 1554 663 118 21 112 chr6 127062329 127062472 -22454565 - ORR1A4 LTR MaLR -199 130 1 1 1554 1518 171 131 49 chr6 127062472 127062815 -22454222 + MTC LTR MaLR 51 421 0 1 1554 315 0 0 0 chr6 127062824 127062859 -22454178 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1554 306 0 0 0 chr6 127062859 127062892 -22454145 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1554 388 275 58 51 chr6 127063056 127063194 -22453843 - MIRc SINE MIR -58 210 72 1 1554 1434 237 189 49 chr6 127063241 127063814 -22453223 + RMER6C LTR ERVK 1 653 -37 1 1554 324 0 0 0 chr6 127063904 127063940 -22453097 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 1 1554 896 139 0 28 chr6 127063941 127064082 -22452955 - B1_Mus2 SINE Alu 0 147 11 1 1554 725 213 0 28 chr6 127064090 127064235 -22452802 - B4A SINE B4 -59 233 93 1 1554 255 309 15 0 chr6 127064270 127064338 -22452699 - B4A SINE B4 -191 101 33 1 1554 266 256 67 0 chr6 127064456 127064546 -22452491 + L1MA5A LINE L1 6198 6293 -4 1 1554 234 248 132 62 chr6 127064618 127064747 -22452290 + B1F2 SINE Alu 12 149 0 1 1554 228 238 0 0 chr6 127065597 127065660 -22451377 + T-rich Low_complexity Low_complexity 1 63 0 1 1554 675 227 8 8 chr6 127065660 127065789 -22451248 - B1_Mur1 SINE Alu -20 129 1 1 1554 240 242 9 157 chr6 127065704 127065812 -22451225 - RLTR25B LTR ERVK -543 485 394 1 1554 225 317 7 115 chr6 127065812 127065843 -22451194 - MT2B2 LTR ERVL -344 240 117 1 1554 966 222 62 5 chr6 127066108 127066316 -22450721 + ID_B1 SINE B4 3 222 -2 1 1554 192 111 0 0 chr6 127066317 127066353 -22450684 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1554 252 56 0 0 chr6 127066367 127066388 -22450649 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1554 1245 48 0 0 chr6 127066388 127066535 -22450502 - B1_Mm SINE Alu 0 147 1 1 1554 252 56 0 0 chr6 127066535 127066549 -22450488 + (T)n Simple_repeat Simple_repeat 1 14 0 1 1554 476 283 205 22 chr6 127066890 127067121 -22449916 - B4 SINE B4 -19 273 1 1 1554 459 326 85 50 chr6 127067858 127068058 -22448979 - MLT1A0 LTR MaLR -155 210 4 1 1554 556 195 26 26 chr6 127068074 127068190 -22448847 + PB1D10 SINE Alu 1 116 -1 1 1554 799 200 7 0 chr6 127068306 127068451 -22448586 - B1_Mur4 SINE Alu 0 150 5 1 1554 344 372 16 0 chr6 127068862 127068983 -22448054 + LTR82A LTR ERVL 703 825 -47 1 1554 1177 50 0 0 chr6 127069351 127069490 -22447547 + B1_Mus1 SINE Alu 1 139 -9 1 1554 315 0 0 0 chr6 127069490 127069525 -22447512 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1554 438 287 146 8 chr6 127069792 127069915 -22447122 + ORR1E LTR MaLR 10 149 -210 1 1554 639 161 54 0 chr6 127070164 127070276 -22446761 - PB1D9 SINE Alu -1 119 2 1 1554 265 290 14 0 chr6 127070282 127070351 -22446686 - ID4 SINE ID -10 73 4 1 1554 218 308 59 93 chr6 127070554 127070672 -22446365 - MIR SINE MIR -29 239 119 1 1554 435 197 0 0 chr6 127071056 127071132 -22445905 - B1_Mur1 SINE Alu -26 123 48 1 1554 604 160 20 0 chr6 127071248 127071347 -22445690 + B3A SINE B2 5 105 -93 1 1554 2695 102 92 28 chr6 127071347 127071809 -22445228 - RMER16 LTR ERVK 0 533 1 1 1554 606 167 25 34 chr6 127071809 127071927 -22445110 + B3 SINE B2 98 214 -2 1 1554 632 222 182 37 chr6 127073549 127073736 -22443301 - B3 SINE B2 -1 215 2 1 1554 288 183 0 62 chr6 127073912 127073976 -22443061 + B4A SINE B4 83 142 -150 1 1554 347 239 128 21 chr6 127073927 127074021 -22443016 + PB1D9 SINE Alu 9 112 -8 1 1554 252 0 0 0 chr6 127074033 127074061 -22442976 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1554 522 154 118 55 chr6 127074108 127074166 -22442871 + B3 SINE B2 1 71 -145 1 1554 2889 22 64 121 chr6 127074166 127074223 -22442814 - MTA_Mm LTR MaLR 0 396 355 1 1554 1156 41 7 46 chr6 127074223 127074375 -22442662 + B1_Mm SINE Alu 2 147 0 1 1554 2889 22 64 121 chr6 127074375 127074737 -22442300 - MTA_Mm LTR MaLR -42 354 1 1 1554 522 154 118 55 chr6 127074737 127074788 -22442249 + B3 SINE B2 72 117 -99 1 1554 318 129 0 0 chr6 127075732 127075794 -22441243 + (T)n Simple_repeat Simple_repeat 1 62 0 1 1554 211 164 54 18 chr6 127076887 127076943 -22440094 + A-rich Low_complexity Low_complexity 3 60 0 1 1554 180 0 0 0 chr6 127078284 127078304 -22438733 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1554 221 75 25 0 chr6 127078844 127078884 -22438153 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 1 1554 225 0 0 0 chr6 127078977 127079002 -22438035 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 1554 213 108 0 0 chr6 127080215 127080252 -22436785 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1554 241 282 151 17 chr6 127080652 127080771 -22436266 + MER5A1 DNA MER1_type 7 141 -25 1 1554 216 0 0 0 chr6 127081788 127081812 -22435225 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1554 230 254 51 0 chr6 127082459 127082518 -22434519 + PB1D7 SINE Alu 42 103 -17 1 1554 21 0 0 0 chr6 127082657 127082678 -22434359 + AT_rich Low_complexity Low_complexity 1 21 0 1 1554 315 78 47 0 chr6 127083412 127083476 -22433561 + (CAAT)n Simple_repeat Simple_repeat 3 69 0 1 1554 279 0 0 0 chr6 127083627 127083658 -22433379 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1554 261 0 0 0 chr6 127083715 127083744 -22433293 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1554 252 0 0 0 chr6 127084334 127084362 -22432675 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 1 1554 883 172 61 6 chr6 127085815 127085996 -22431041 + B2_Mm2 SINE B2 1 191 -4 1 1554 306 50 0 0 chr6 127086096 127086136 -22430901 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 1 1554 459 255 86 10 chr6 127086147 127086345 -22430692 - L1MB2 LINE L1 -193 5978 5766 1 1554 556 200 367 0 chr6 127086518 127086668 -22430369 - B3 SINE B2 -10 206 2 1 1554 255 203 0 0 chr6 127086687 127086746 -22430291 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1554 1397 91 11 0 chr6 127086786 127086972 -22430065 - B2_Mm1t SINE B2 -4 189 2 1 1554 1095 93 12 0 chr6 127086972 127087133 -22429904 - L1_Mus3 LINE L1 -15 6623 6461 1 1554 360 0 0 0 chr6 127087266 127087306 -22429731 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1554 387 198 11 55 chr6 127088525 127088616 -22428421 + ID_B1 SINE B4 77 163 -61 1 1554 346 204 148 0 chr6 127088549 127088637 -22428400 + PB1D7 SINE Alu 15 115 -5 1 1554 1055 125 32 32 chr6 127088639 127088829 -22428208 + B2_Mm2 SINE B2 6 195 0 2 1554 242 231 19 0 chr6 127088841 127088893 -22428144 + ID4_ SINE ID 2 54 -29 2 1554 342 0 0 0 chr6 127088905 127088943 -22428094 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1554 682 297 85 0 chr6 127089620 127089785 -22427252 + B3 SINE B2 3 181 -35 2 1554 776 111 0 0 chr6 127091405 127091513 -22425524 + B1_Mus2 SINE Alu 34 141 -6 2 1554 414 0 0 0 chr6 127094709 127094755 -22422282 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1554 222 364 50 0 chr6 127094937 127095036 -22422001 - MIRc SINE MIR -120 148 45 2 1554 377 288 77 113 chr6 127095256 127095287 -22421750 + CYRA11_Mm Unknown Y-chromosome 155 342 -275 2 1554 1064 187 43 5 chr6 127095287 127095497 -22421540 - URR1A DNA MER1_type -8 218 1 2 1554 189 0 0 0 chr6 127097503 127097524 -22419513 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1554 28 0 0 0 chr6 127100821 127100849 -22416188 + AT_rich Low_complexity Low_complexity 1 28 0 2 1554 204 40 0 0 chr6 127100933 127100958 -22416079 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1554 326 274 0 59 chr6 127101094 127101195 -22415842 + C-rich Low_complexity Low_complexity 1 95 0 2 1554 219 186 23 0 chr6 127103784 127103827 -22413210 + T-rich Low_complexity Low_complexity 2 45 0 2 1554 29 0 0 0 chr6 127105294 127105323 -22411714 + AT_rich Low_complexity Low_complexity 1 29 0 2 1554 32 26 0 0 chr6 127108831 127108870 -22408167 + AT_rich Low_complexity Low_complexity 1 39 0 2 1554 828 191 202 0 chr6 127109559 127109737 -22407300 - B3 SINE B2 0 216 3 2 1554 217 366 44 28 chr6 127109789 127109969 -22407068 + MIR3 SINE MIR 3 185 -23 2 1554 192 136 91 0 chr6 127109976 127110042 -22406995 + (CACCAT)n Simple_repeat Simple_repeat 4 75 0 2 1554 556 106 21 0 chr6 127110551 127110645 -22406392 + (TTCC)n Simple_repeat Simple_repeat 4 99 0 2 1554 194 290 158 10 chr6 127111414 127111515 -22405522 - L3 LINE CR1 -71 4418 4303 2 1554 762 124 0 0 chr6 127111753 127111874 -22405163 + (TCCA)n Simple_repeat Simple_repeat 3 123 0 2 1554 1430 33 0 6 chr6 127111881 127112062 -22404975 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1554 600 275 7 21 chr6 127112100 127112241 -22404796 - RSINE1 SINE B4 -4 161 23 2 1554 181 72 22 67 chr6 127113425 127113470 -22403567 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1554 660 247 11 90 chr6 127113480 127113658 -22403379 - RSINE1 SINE B4 0 165 2 2 1554 725 298 26 10 chr6 127113996 127114189 -22402848 - B3 SINE B2 -11 205 10 2 1554 474 314 112 39 chr6 127114195 127114533 -22402504 + L1M4 LINE L1 966 1328 -5576 2 1554 475 263 0 0 chr6 127114556 127114651 -22402386 + B4A SINE B4 198 292 0 2 1554 293 245 2 0 chr6 127114715 127114792 -22402245 + L1M4 LINE L1 2317 2383 -4951 2 1554 556 303 63 58 chr6 127115077 127115560 -22401477 + L1M4 LINE L1 2654 3147 -3859 2 1554 256 260 82 0 chr6 127115560 127115633 -22401404 + ID4_ SINE ID 5 83 0 2 1554 556 281 80 71 chr6 127115633 127115814 -22401223 + L1M4 LINE L1 3148 3340 -3666 2 1554 243 361 20 10 chr6 127115868 127115966 -22401071 - L3 LINE CR1 -257 4232 4134 2 1554 531 154 33 0 chr6 127116160 127116251 -22400786 + URR1A DNA MER1_type 22 115 -111 2 1554 677 235 9 137 chr6 127116410 127116637 -22400400 - B3A SINE B2 0 198 1 2 1554 221 217 0 71 chr6 127116784 127116856 -22400181 + ID4 SINE ID 7 74 -9 2 1554 874 156 202 0 chr6 127117196 127117369 -22399668 + URR1A DNA MER1_type 19 226 0 2 1554 258 301 176 0 chr6 127117384 127117537 -22399500 + ORR1E LTR MaLR 180 359 0 2 1554 316 227 0 170 chr6 127118117 127118223 -22398814 - B3A SINE B2 0 198 111 2 1554 253 162 250 0 chr6 127118742 127118810 -22398227 - ORR1E LTR MaLR -224 135 51 2 1554 301 314 50 50 chr6 127119070 127119231 -22397806 + MIR SINE MIR 90 250 -12 2 1554 229 169 59 24 chr6 127119748 127119833 -22397204 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 1554 431 282 120 92 chr6 127119978 127120228 -22396809 + ORR1E LTR MaLR 19 275 -99 2 1554 697 301 54 0 chr6 127120526 127120729 -22396308 + Tigger13a DNA MER2_type 490 703 -68 2 1554 981 305 55 27 chr6 127121139 127121469 -22395568 - MTEa LTR MaLR 0 379 41 2 1554 293 33 0 90 chr6 127121473 127121540 -22395497 + (TTTTTG)n Simple_repeat Simple_repeat 4 64 0 2 1554 855 167 183 0 chr6 127121587 127121767 -22395270 - B3 SINE B2 0 216 4 2 1554 455 157 0 0 chr6 127121767 127121837 -22395200 - MTEa LTR MaLR -347 74 5 2 1554 238 294 29 0 chr6 127123130 127123198 -22393839 + B4A SINE B4 86 155 -137 2 1554 698 221 68 51 chr6 127123300 127123476 -22393561 + ID_B1 SINE B4 1 179 -45 2 1554 466 226 9 36 chr6 127123384 127123494 -22393543 + PB1D10 SINE Alu 8 114 -3 2 1554 279 152 61 18 chr6 127123497 127123611 -22393426 + (TA)n Simple_repeat Simple_repeat 1 119 0 2 1554 722 219 126 37 chr6 127123635 127123849 -22393188 - B4A SINE B4 -47 245 13 2 1554 275 359 26 0 chr6 127123874 127123991 -22393046 - PB1 SINE Alu -7 120 1 2 1554 930 100 0 0 chr6 127124743 127124883 -22392154 + (GA)n Simple_repeat Simple_repeat 1 140 0 2 1554 260 304 0 37 chr6 127124924 127125006 -22392031 - B3A SINE B2 -108 90 12 2 1554 419 274 18 48 chr6 127125044 127125209 -22391828 - RSINE1 SINE B4 -3 162 3 2 1554 459 248 43 23 chr6 127125215 127125339 -22391698 - B1_Mur1 SINE Alu 0 149 4 2 1554 216 0 0 0 chr6 127125348 127125372 -22391665 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1554 1200 29 0 0 chr6 127125372 127125510 -22391527 - B1_Mus1 SINE Alu -9 139 2 2 1554 435 221 178 105 chr6 127125541 127125693 -22391344 + RSINE1 SINE B4 3 165 0 2 1554 464 297 23 41 chr6 127125713 127125885 -22391152 - B3A SINE B2 -27 171 3 2 1554 451 258 43 0 chr6 127125947 127126040 -22390997 - PB1D7 SINE Alu -20 100 4 2 1554 311 257 65 19 chr6 127126431 127126538 -22390499 - PB1D7 SINE Alu -8 112 1 2 1554 271 362 82 8 chr6 127126774 127126963 -22390074 - MIR SINE MIR -40 222 25 2 1554 22 0 0 0 chr6 127128419 127128441 -22388596 + AT_rich Low_complexity Low_complexity 1 22 0 2 1554 387 0 0 0 chr6 127128475 127128518 -22388519 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1554 224 280 80 0 chr6 127128525 127128600 -22388437 - RSINE1 SINE B4 -43 122 42 2 1554 526 217 26 0 chr6 127128645 127128760 -22388277 - B1F2 SINE Alu -22 127 10 2 1554 566 177 17 17 chr6 127128767 127128882 -22388155 - PB1D7 SINE Alu -3 117 3 2 1554 261 0 0 0 chr6 127128950 127128979 -22388058 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 2 1554 214 189 0 0 chr6 127129738 127129775 -22387262 + (TAG)n Simple_repeat Simple_repeat 1 37 0 2 1554 347 328 8 16 chr6 127129931 127130052 -22386985 - ID_B1 SINE B4 -28 196 77 2 1554 689 129 0 8 chr6 127130352 127130469 -22386568 + (TA)n Simple_repeat Simple_repeat 2 117 0 2 1554 552 257 36 7 chr6 127130490 127130627 -22386410 - B1F SINE Alu -8 141 1 2 1554 336 241 13 0 chr6 127130693 127130772 -22386265 - ID2 SINE ID -3 80 1 2 1554 330 87 0 0 chr6 127130824 127130870 -22386167 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1554 231 267 0 0 chr6 127130872 127130958 -22386079 + (TA)n Simple_repeat Simple_repeat 1 86 0 2 1554 378 42 0 0 chr6 127130981 127131029 -22386008 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1554 221 204 17 100 chr6 127131174 127131234 -22385803 - ID4_ SINE ID -28 55 1 2 1554 276 257 42 28 chr6 127132403 127132475 -22384562 - PB1D10 SINE Alu 0 117 45 2 1554 225 154 0 0 chr6 127132558 127132597 -22384440 + (TTG)n Simple_repeat Simple_repeat 3 41 0 2 1554 324 70 0 0 chr6 127132602 127132645 -22384392 + (TCC)n Simple_repeat Simple_repeat 3 45 0 2 1554 187 105 205 26 chr6 127132768 127132807 -22384230 - MIR SINE MIR -116 92 47 2 1554 546 16 0 0 chr6 127134944 127135007 -22382030 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 2 1554 279 62 94 0 chr6 127135007 127135071 -22381966 + (TCTCTG)n Simple_repeat Simple_repeat 6 75 0 2 1554 485 231 22 0 chr6 127136605 127136705 -22380332 - B1F SINE Alu -7 113 1 2 1554 263 333 54 0 chr6 127136744 127136891 -22380146 + L1MC3 LINE L1 7616 7770 -15 2 1554 222 337 0 12 chr6 127136935 127137019 -22380018 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1554 290 333 173 7 chr6 127137142 127137281 -22379756 - B4 SINE B4 -129 163 2 2 1554 324 224 88 39 chr6 127137584 127137686 -22379351 - MLT1J LTR MaLR -318 194 88 2 1554 226 26 25 50 chr6 127137760 127137800 -22379237 + (TATAA)n Simple_repeat Simple_repeat 5 43 0 2 1554 504 215 6 65 chr6 127137850 127138017 -22379020 - B1_Mur2 SINE Alu -1 148 1 2 194 1266 212 165 32 chr6 127139522 127139892 -22377145 + MTD LTR MaLR 1 419 0 2 1555 335 333 108 11 chr6 127139941 127140117 -22376920 - MLT1L LTR MaLR -135 475 283 2 1555 583 299 7 7 chr6 127140343 127140488 -22376549 - MTEa LTR MaLR -2 377 233 2 1555 187 54 54 0 chr6 127140489 127140526 -22376511 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1555 1118 67 0 0 chr6 127140552 127140687 -22376350 + B1_Mm SINE Alu 2 136 -11 2 1555 252 0 0 0 chr6 127140688 127140716 -22376321 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2 1555 897 268 36 52 chr6 127140722 127140970 -22376067 - MTEa LTR MaLR -133 246 3 2 1555 1075 95 0 13 chr6 127140971 127141120 -22375917 + B1_Mus2 SINE Alu 1 147 0 2 1555 279 315 36 18 chr6 127141150 127141260 -22375777 + L2c LINE L2 2352 2463 -956 2 1555 900 218 46 23 chr6 127141408 127141624 -22375413 + URR1B DNA MER1_type 5 225 0 2 1555 518 322 107 63 chr6 127141628 127142122 -22374915 - MLT2B3 LTR ERVL -151 566 78 2 1555 184 274 137 0 chr6 127142859 127142910 -22374127 + L2c LINE L2 3325 3382 -5 2 1555 513 0 0 0 chr6 127143116 127143173 -22373864 + (TATG)n Simple_repeat Simple_repeat 3 59 0 3 1555 771 112 0 0 chr6 127143278 127143394 -22373643 + (TTCC)n Simple_repeat Simple_repeat 3 118 0 3 1555 1138 138 0 21 chr6 127143400 127143593 -22373444 - B2_Mm2 SINE B2 0 195 7 3 1555 239 273 51 4 chr6 127144033 127144188 -22372849 + L1M2 LINE L1 4402 4568 -1578 3 1555 363 44 0 0 chr6 127144298 127144343 -22372694 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1555 251 176 39 19 chr6 127144363 127144415 -22372622 + L1M2 LINE L1 5037 5089 -1051 3 1555 684 286 33 6 chr6 127144518 127144701 -22372336 + B3A SINE B2 2 189 -9 3 1555 330 315 101 34 chr6 127144722 127144870 -22372167 + L1M2 LINE L1 5169 5326 -817 3 1555 433 289 55 27 chr6 127144871 127145017 -22372020 + RSINE1 SINE B4 3 152 -13 3 1555 246 312 0 0 chr6 127145121 127145185 -22371852 + B4A SINE B4 225 288 -4 3 1555 541 319 92 51 chr6 127145685 127146075 -22370962 - LTR85c LTR Gypsy? -28 795 390 3 1555 426 270 12 144 chr6 127146688 127146762 -22370275 + ID_B1 SINE B4 84 156 -68 3 1555 723 270 54 5 chr6 127146762 127146967 -22370070 + B3 SINE B2 1 215 -1 3 1555 426 270 12 144 chr6 127146967 127147052 -22369985 + ID_B1 SINE B4 157 222 -2 3 1555 592 284 142 16 chr6 127147445 127147699 -22369338 + B4 SINE B4 3 288 -4 3 1555 778 187 144 27 chr6 127148133 127148320 -22368717 + B3 SINE B2 5 213 -3 3 1555 464 149 19 7 chr6 127149331 127149429 -22367608 + B1_Mus2 SINE Alu 1 103 -47 3 1555 232 208 12 105 chr6 127149368 127149454 -22367583 + RLTR25B LTR ERVK 441 518 -510 3 1555 556 266 190 0 chr6 127150921 127151105 -22365932 + MIRb SINE MIR 38 256 -12 3 1555 371 194 15 0 chr6 127151274 127151341 -22365696 + ID4_ SINE ID 2 69 -14 3 1555 500 333 0 26 chr6 127151973 127152124 -22364913 + B1F1 SINE Alu 1 147 -2 3 1555 323 229 0 0 chr6 127152194 127152255 -22364782 - B3 SINE B2 -69 147 87 3 1555 24 0 0 0 chr6 127152262 127152286 -22364751 + AT_rich Low_complexity Low_complexity 1 24 0 3 1555 449 237 0 40 chr6 127152292 127152393 -22364644 - B3 SINE B2 -119 97 1 3 1555 658 308 67 18 chr6 127152393 127152590 -22364447 - MTD LTR MaLR -207 212 5 3 1555 353 276 189 53 chr6 127152595 127152897 -22364140 - ORR1D1 LTR MaLR -13 361 19 3 1555 206 326 89 55 chr6 127152919 127153065 -22363972 + MIRc SINE MIR 90 240 -28 3 1555 232 308 168 0 chr6 127153154 127153261 -22363776 + MIRc SINE MIR 42 166 -102 3 1555 753 174 63 28 chr6 127153360 127153502 -22363535 - B1_Mur1 SINE Alu 0 149 3 3 1555 477 0 0 0 chr6 127153977 127154030 -22363007 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 3 1555 275 278 0 14 chr6 127154034 127154107 -22362930 - ID4 SINE ID -10 73 2 3 1555 21 0 0 0 chr6 127154667 127154688 -22362349 + AT_rich Low_complexity Low_complexity 1 21 0 3 1555 207 200 45 30 chr6 127155078 127155145 -22361892 + G-rich Low_complexity Low_complexity 1 68 0 3 1555 1099 242 58 23 chr6 127155261 127155608 -22361429 - ORR1E LTR MaLR 0 359 1 3 1555 311 256 0 25 chr6 127155672 127155752 -22361285 + ID4 SINE ID 1 78 -5 3 1555 3321 47 0 5 chr6 127155810 127156216 -22360821 - L1_Mus1 LINE L1 0 6567 6164 3 1555 830 67 0 0 chr6 127156216 127156320 -22360717 + L1_Mus1 LINE L1 6058 6161 -406 3 1555 205 86 29 0 chr6 127156538 127156573 -22360464 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 3 1555 914 151 0 0 chr6 127156574 127156713 -22360324 - B1_Mm SINE Alu 0 147 9 3 1555 416 284 114 52 chr6 127157181 127157452 -22359585 - MER97c DNA MER1_type? -746 344 57 3 1555 285 249 7 13 chr6 127157888 127158045 -22358992 + (TG)n Simple_repeat Simple_repeat 1 155 0 3 1555 308 183 158 0 chr6 127158055 127158137 -22358900 + ID_B1 SINE B4 130 224 0 3 1555 25 0 0 0 chr6 127158573 127158598 -22358439 + AT_rich Low_complexity Low_complexity 1 25 0 3 1555 217 300 36 24 chr6 127159081 127159166 -22357871 + MIR3 SINE MIR 92 193 -75 3 1555 450 0 0 0 chr6 127161069 127161119 -22355918 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1555 267 272 188 82 chr6 127161134 127161342 -22355695 + RMER5 LTR ERV1 15 244 -290 3 1555 490 280 82 6 chr6 127161380 127161538 -22355499 + RMER5 LTR ERV1 361 530 -4 3 1555 2311 152 169 28 chr6 127161780 127162247 -22354790 + MT2A LTR ERVL 1 533 0 3 1555 358 275 84 32 chr6 127162377 127162531 -22354506 + RMER15 LTR ERVL 414 575 0 3 1555 475 226 0 0 chr6 127162767 127162851 -22354186 - MTEb LTR MaLR -10 369 286 3 1555 407 229 0 0 chr6 127163223 127163293 -22353744 + ID_B1 SINE B4 114 183 -41 3 1555 305 289 79 0 chr6 127163293 127163326 -22353711 + PB1D10 SINE Alu 33 144 -5 3 1555 234 388 23 52 chr6 127163386 127163560 -22353477 - MIRb SINE MIR -50 218 50 3 1555 202 361 92 42 chr6 127163770 127163987 -22353050 + L2a LINE L2 3199 3426 0 3 1555 959 71 47 0 chr6 127164228 127164398 -22352639 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 3 1555 526 177 24 103 chr6 127164424 127164550 -22352487 + B1_Mur4 SINE Alu 35 150 0 3 1555 246 183 0 62 chr6 127164560 127164624 -22352413 + A-rich Low_complexity Low_complexity 4 63 0 3 1555 252 259 89 36 chr6 127165950 127166062 -22350975 - L1MC2 LINE L1 -9 6335 6218 3 1555 572 275 132 40 chr6 127166314 127166640 -22350397 - L1_Mur3 LINE L1 -64 5816 5461 3 1555 219 182 18 0 chr6 127167359 127167414 -22349623 + (TTG)n Simple_repeat Simple_repeat 2 57 0 3 1555 246 32 0 0 chr6 127167475 127167506 -22349531 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 3 1555 1104 205 5 9 chr6 127167528 127167740 -22349297 - B3 SINE B2 -5 211 1 3 1555 699 288 30 32 chr6 127168085 127168395 -22348642 - ORR1E LTR MaLR -1 378 1 3 1555 865 246 59 18 chr6 127168426 127168645 -22348392 - B4A SINE B4 -62 230 3 3 1555 262 303 0 116 chr6 127168748 127168860 -22348177 + ID2 SINE ID 1 99 -53 3 1555 192 333 37 16 chr6 127169362 127169470 -22347567 + MIRc SINE MIR 83 193 -83 3 1555 1044 228 19 0 chr6 127169867 127170078 -22346959 - B3 SINE B2 0 216 2 3 1555 183 80 0 0 chr6 127170347 127170372 -22346665 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1555 324 0 0 0 chr6 127170413 127170449 -22346588 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1555 229 263 105 0 chr6 127170468 127170525 -22346512 - ID_B1 SINE B4 -78 146 84 3 1555 277 143 122 0 chr6 127170477 127170526 -22346511 - PB1D9 SINE Alu -64 56 2 3 1555 210 91 0 0 chr6 127170723 127170756 -22346281 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 3 1555 700 293 6 6 chr6 127170941 127171116 -22345921 - B3 SINE B2 -40 176 2 3 1555 225 234 157 78 chr6 127171083 127171123 -22345914 - B4A SINE B4 -43 249 217 3 1555 278 106 21 0 chr6 127171123 127171170 -22345867 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 3 1555 225 234 157 78 chr6 127171170 127171231 -22345806 - B4A SINE B4 -76 216 141 3 1555 2617 141 34 17 chr6 127171315 127171727 -22345310 + MTC LTR MaLR 3 421 0 3 1555 440 297 8 23 chr6 127171906 127172037 -22345000 + ORR1E LTR MaLR 9 137 -222 3 1555 406 299 35 52 chr6 127172101 127172342 -22344695 + ORR1E LTR MaLR 116 372 -7 3 1555 570 124 0 0 chr6 127172629 127172718 -22344319 + (TCC)n Simple_repeat Simple_repeat 2 90 0 3 1555 236 315 0 42 chr6 127172911 127173007 -22344030 - L1MC LINE L1 -2204 5678 5587 3 1555 450 250 41 10 chr6 127173047 127173144 -22343893 + PB1D10 SINE Alu 4 103 -14 3 1555 1632 298 134 25 chr6 127173408 127174211 -22342826 - Lx8 LINE L1 -25 7448 6558 3 1555 34 96 0 0 chr6 127174400 127174504 -22342533 + AT_rich Low_complexity Low_complexity 1 104 0 3 1555 238 330 94 33 chr6 127174814 127175058 -22341979 - L1M5 LINE L1 -1398 4748 4490 3 1555 305 337 11 0 chr6 127175487 127175582 -22341455 + ID_B1 SINE B4 78 173 -51 3 1555 352 298 9 71 chr6 127175497 127175609 -22341428 + PB1D10 SINE Alu 7 111 -6 3 1555 525 119 30 0 chr6 127175644 127175745 -22341292 + (GA)n Simple_repeat Simple_repeat 1 104 0 3 1555 478 288 56 8 chr6 127175756 127175882 -22341155 + B1F1 SINE Alu 10 141 -8 3 1555 300 191 109 87 chr6 127175909 127176001 -22341036 + BC1_Mm scRNA scRNA 7 100 -52 3 1555 609 201 83 39 chr6 127176005 127176186 -22340851 + B2_Mm2 SINE B2 6 194 -1 3 1555 247 351 108 0 chr6 127176339 127176450 -22340587 + L2 LINE L2 2738 2860 -559 3 1555 459 281 43 72 chr6 127176586 127176793 -22340244 + MER102a DNA MER1_type 19 219 -111 3 1555 722 218 21 21 chr6 127177079 127177264 -22339773 - B3 SINE B2 -1 194 10 3 1555 516 288 99 73 chr6 127177858 127178006 -22339031 + B3A SINE B2 2 164 -34 3 1555 762 11 0 0 chr6 127178006 127178093 -22338944 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 3 1555 516 288 99 73 chr6 127178093 127178135 -22338902 + B3A SINE B2 165 197 -1 3 1555 250 355 73 18 chr6 127178142 127178251 -22338786 + B1F2 SINE Alu 1 115 -34 3 1555 256 336 19 28 chr6 127178165 127178256 -22338781 + ID_B1 SINE B4 108 197 -27 3 1555 498 301 131 30 chr6 127178256 127178455 -22338582 + MTEb LTR MaLR 3 221 -158 3 1555 372 245 1 82 chr6 127180559 127180682 -22336355 + PB1D10 SINE Alu 14 130 -20 3 1555 302 305 76 8 chr6 127181247 127181379 -22335658 - L1MC LINE L1 -2109 5773 5633 3 1555 616 281 190 36 chr6 127181765 127182012 -22335025 + B4A SINE B4 8 292 0 3 1555 288 91 0 0 chr6 127182112 127182156 -22334881 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1555 188 228 16 66 chr6 127182161 127182222 -22334815 + L3 LINE CR1 725 782 -3707 3 1555 322 203 40 0 chr6 127182462 127182536 -22334501 + RMER15 LTR ERVL 422 498 -77 3 1555 464 223 28 78 chr6 127182470 127182611 -22334426 + B1F SINE Alu 15 148 -1 3 1555 194 0 39 0 chr6 127182626 127182652 -22334385 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 3 1555 1171 48 14 7 chr6 127182745 127182891 -22334146 + B1_Mus1 SINE Alu 2 148 0 3 1555 202 73 24 24 chr6 127182891 127182933 -22334104 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 1555 595 308 55 12 chr6 127182953 127183209 -22333828 + MER33 DNA MER1_type 45 311 -13 4 1555 249 312 60 48 chr6 127183233 127183485 -22333552 + L1MC4 LINE L1 7602 7856 -186 4 1555 890 43 0 41 chr6 127183547 127183668 -22333369 - B1_Mus2 SINE Alu 0 147 32 4 1555 192 111 0 0 chr6 127184676 127184712 -22332325 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1555 1152 248 22 98 chr6 127184878 127185201 -22331836 - MTE2a LTR MaLR -2 377 78 4 1555 2560 157 42 2 chr6 127185201 127185603 -22331434 - MTC LTR MaLR -2 419 2 4 1555 1152 248 22 98 chr6 127185603 127185646 -22331391 - MTE2a LTR MaLR -302 77 39 4 1555 180 179 0 0 chr6 127185666 127185705 -22331332 + T-rich Low_complexity Low_complexity 1 39 0 4 1555 389 283 132 9 chr6 127185721 127185835 -22331202 - RSINE1 SINE B4 -35 130 3 4 1555 194 233 133 0 chr6 127186074 127186134 -22330903 + L2 LINE L2 2797 2864 -555 4 1555 565 285 123 36 chr6 127186314 127186565 -22330472 - B4A SINE B4 -16 276 4 4 1555 265 179 0 0 chr6 127186580 127186619 -22330418 - PB1 SINE Alu -64 63 25 4 1555 239 211 0 37 chr6 127186913 127186967 -22330070 - PB1 SINE Alu -29 98 47 4 1555 328 256 117 0 chr6 127187510 127187647 -22329390 + L1MC4a LINE L1 7730 7882 0 4 1555 5494 52 30 58 chr6 127187746 127188396 -22328641 - L1_Mus1 LINE L1 -1 6566 5955 4 1555 1079 120 11 0 chr6 127188396 127188571 -22328466 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 4 1555 1205 50 0 0 chr6 127188574 127188715 -22328322 - B1_Mus2 SINE Alu -6 141 1 4 1555 5494 52 30 58 chr6 127188715 127188807 -22328230 - L1_Mus1 LINE L1 -613 5954 5841 4 1555 185 65 0 31 chr6 127188902 127188934 -22328103 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1555 647 240 105 43 chr6 127188955 127189164 -22327873 - B4A SINE B4 -70 222 1 4 1555 295 135 19 0 chr6 127189169 127189221 -22327816 - L1MC LINE L1 -642 5691 5639 4 1555 195 129 0 0 chr6 127189233 127189264 -22327773 + (CAT)n Simple_repeat Simple_repeat 2 32 0 4 1555 800 168 14 7 chr6 127189278 127189416 -22327621 - B1_Mur1 SINE Alu -10 139 1 4 1555 355 268 120 6 chr6 127189419 127189577 -22327460 - L1MC LINE L1 -862 5471 5296 4 1555 283 316 57 51 chr6 127191087 127191244 -22325793 - Tigger9a DNA Tigger -2 730 573 4 1555 325 236 14 0 chr6 127192422 127192494 -22324543 - ID4 SINE ID -10 73 1 4 1555 1243 133 10 39 chr6 127192518 127192721 -22324316 + URR1A DNA MER1_type 30 226 0 4 1555 223 233 76 65 chr6 127192742 127192834 -22324203 - MIRc SINE MIR -141 127 35 4 1555 312 341 39 8 chr6 127193007 127193137 -22323900 - MIRb SINE MIR -118 150 17 4 1555 202 281 251 45 chr6 127193881 127194283 -22322754 - L2 LINE L2 -2223 1196 712 4 1555 633 267 55 81 chr6 127194398 127194634 -22322403 - MTEb LTR MaLR -18 361 132 4 1555 517 261 98 18 chr6 127194684 127194974 -22322063 - L1M3 LINE L1 -1002 4875 4539 4 1555 643 228 48 14 chr6 127194978 127195125 -22321912 + B3 SINE B2 60 211 -5 4 1555 558 43 0 0 chr6 127195125 127195194 -22321843 + (TCCC)n Simple_repeat Simple_repeat 4 72 0 4 1555 517 187 45 45 chr6 127195194 127195306 -22321731 - PB1D9 SINE Alu -7 113 2 4 1555 1064 134 0 6 chr6 127195418 127195576 -22321461 - B2_Mm2 SINE B2 -19 176 20 4 1555 189 0 0 0 chr6 127195597 127195618 -22321419 + (TTA)n Simple_repeat Simple_repeat 1 21 0 4 1555 182 286 25 49 chr6 127196311 127196392 -22320645 - L2c LINE L2 -258 3129 3051 4 1555 191 36 36 0 chr6 127196660 127196688 -22320349 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 4 1555 283 98 0 24 chr6 127196781 127196823 -22320214 + tRNA-Trp-TGG tRNA tRNA 1 41 -34 4 1555 450 203 80 16 chr6 127196827 127196952 -22320085 + MER94 DNA AcHobo 2 134 0 4 1555 544 277 124 60 chr6 127198716 127198981 -22318056 + B4 SINE B4 1 282 -10 4 1555 240 35 0 0 chr6 127199017 127199046 -22317991 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1555 210 315 0 0 chr6 127199134 127199188 -22317849 - ID4_ SINE ID -2 81 28 4 1555 732 284 31 16 chr6 127199383 127199576 -22317461 - B3A SINE B2 -1 197 2 4 1555 196 314 112 32 chr6 127200481 127200606 -22316431 + MIRb SINE MIR 22 156 -112 4 1555 378 42 0 0 chr6 127200672 127200720 -22316317 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1555 212 143 0 23 chr6 127202809 127202852 -22314185 + GA-rich Low_complexity Low_complexity 2 43 0 4 1555 378 0 0 0 chr6 127202989 127203031 -22314006 + (TTA)n Simple_repeat Simple_repeat 1 42 0 4 1555 624 325 121 25 chr6 127203093 127203333 -22313704 - B4 SINE B4 -29 263 1 4 1555 546 91 0 0 chr6 127203551 127203628 -22313409 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 4 1555 452 206 93 0 chr6 127204769 127204866 -22312171 + ID_B1 SINE B4 85 190 -34 4 1555 930 128 96 34 chr6 127204894 127205072 -22311965 + B2_Mm2 SINE B2 1 189 -6 4 1555 215 282 113 0 chr6 127205281 127205352 -22311685 + ID4_ SINE ID 1 79 -4 4 1555 297 288 149 119 chr6 127205460 127205728 -22311309 - B4 SINE B4 0 292 17 4 1555 2098 202 57 0 chr6 127205835 127206221 -22310816 + MTC LTR MaLR 13 420 -1 4 1555 1045 203 64 0 chr6 127206488 127206690 -22310347 + B3 SINE B2 1 215 -1 4 1555 387 341 50 93 chr6 127206953 127207058 -22309979 + L1M5 LINE L1 2258 2356 -3790 4 1555 824 268 48 10 chr6 127207058 127207265 -22309772 + B3 SINE B2 2 216 0 4 1555 387 341 50 93 chr6 127207265 127207288 -22309749 + L1M5 LINE L1 2357 2375 -3771 4 1555 1028 123 0 0 chr6 127207288 127207426 -22309611 + B1_Mur4 SINE Alu 2 139 -11 4 1555 387 341 50 93 chr6 127207426 127207574 -22309463 + L1M5 LINE L1 2376 2523 -3623 4 1555 443 213 22 7 chr6 127207619 127207756 -22309281 + (TA)n Simple_repeat Simple_repeat 1 139 0 4 1555 252 0 0 0 chr6 127207829 127207857 -22309180 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1555 1164 43 43 0 chr6 127207857 127207997 -22309040 + B1_Mm SINE Alu 1 146 -1 4 1555 376 367 102 27 chr6 127208018 127208358 -22308679 + L1M5 LINE L1 2570 2925 -3221 4 1555 1016 105 0 59 chr6 127208391 127208543 -22308494 - B1_Mur4 SINE Alu -7 143 1 4 1555 750 238 0 19 chr6 127208570 127208724 -22308313 + RSINE1 SINE B4 3 153 -12 4 1555 387 0 0 0 chr6 127208735 127208778 -22308259 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 1555 303 309 56 92 chr6 127209031 127209227 -22307810 + MLT1A LTR MaLR 196 384 -6 4 1555 261 325 54 54 chr6 127209305 127209582 -22307455 + L1M5 LINE L1 3389 3665 -2481 4 1555 584 379 100 48 chr6 127209613 127209940 -22307097 + L1M5 LINE L1 3696 4010 -2136 4 1555 847 105 0 23 chr6 127209940 127210115 -22306922 + (TCTCTG)n Simple_repeat Simple_repeat 2 172 0 4 1555 584 379 100 48 chr6 127210115 127210878 -22306159 + L1M5 LINE L1 4011 4843 -1303 4 1555 515 330 45 25 chr6 127211488 127211687 -22305350 - MT2A LTR ERVL -100 433 231 4 1555 987 172 194 0 chr6 127212219 127212399 -22304638 + B3 SINE B2 2 216 0 4 1555 323 277 87 0 chr6 127212656 127212750 -22304287 - PB1D9 SINE Alu -2 118 14 4 1555 271 294 29 10 chr6 127212780 127212883 -22304154 - MIRb SINE MIR -74 194 90 4 1555 278 264 0 0 chr6 127213435 127213507 -22303530 + PB1D10 SINE Alu 43 114 -3 4 1555 916 258 45 34 chr6 127214654 127214923 -22302114 - B4A SINE B4 -16 276 5 4 1555 495 33 0 0 chr6 127215323 127215384 -22301653 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 1555 902 128 7 0 chr6 127215669 127215818 -22301219 + (GGAGAA)n Simple_repeat Simple_repeat 2 151 0 4 1555 248 204 34 11 chr6 127215818 127215896 -22301141 + GA-rich Low_complexity Low_complexity 11 90 0 4 1555 254 194 16 0 chr6 127215826 127215888 -22301149 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 4 1555 576 0 0 0 chr6 127216117 127216181 -22300856 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1555 1452 205 50 53 chr6 127217037 127217377 -22299660 - MTE2b LTR MaLR -5 374 36 4 1555 313 259 0 201 chr6 127217257 127217421 -22299616 - MT2A LTR ERVL -386 147 17 4 1555 184 227 8 8 chr6 127217970 127218084 -22298953 + CT-rich Low_complexity Low_complexity 1 114 0 4 1555 322 296 91 0 chr6 127218087 127218175 -22298862 - PB1D10 SINE Alu -16 101 6 4 1555 378 0 0 0 chr6 127218329 127218371 -22298666 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 4 1555 207 321 116 32 chr6 127219120 127219299 -22297738 - MIRb SINE MIR -81 195 1 4 1555 183 184 0 0 chr6 127220829 127220867 -22296170 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1555 671 204 78 5 chr6 127221544 127221707 -22295330 - B3 SINE B2 0 216 29 4 1555 1412 191 156 17 chr6 127221744 127222090 -22294947 + MTD LTR MaLR 26 419 0 4 1555 547 179 30 6 chr6 127224177 127224346 -22292691 + (TCTA)n Simple_repeat Simple_repeat 4 176 0 4 1555 235 94 0 0 chr6 127224349 127224381 -22292656 + (TATG)n Simple_repeat Simple_repeat 1 32 0 4 1555 529 159 41 0 chr6 127224381 127224551 -22292486 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 4 1555 225 177 48 0 chr6 127224753 127224815 -22292222 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 4 1555 721 310 73 18 chr6 127225096 127225382 -22291655 + Charlie2b DNA MER1_type 1736 2037 -745 4 1555 1219 174 14 14 chr6 127225467 127225683 -22291354 + B3 SINE B2 1 216 0 4 1555 22 56 0 0 chr6 127225683 127225719 -22291318 + AT_rich Low_complexity Low_complexity 1 36 0 4 1555 427 291 36 9 chr6 127225776 127225887 -22291150 + PB1D10 SINE Alu 2 115 -2 4 1555 403 283 92 46 chr6 127225997 127226149 -22290888 + B4A SINE B4 134 292 0 4 1555 273 333 111 30 chr6 127226413 127226611 -22290426 - L1MD LINE L1 -498 5744 5531 4 1555 631 183 43 9 chr6 127226693 127226809 -22290228 - B1F2 SINE Alu 0 149 30 4 1555 438 237 69 42 chr6 127226809 127226837 -22290200 - ID_B1 SINE B4 0 224 9 4 1555 347 250 155 37 chr6 127226842 127227029 -22290008 - L1MD LINE L1 -1390 4756 4548 4 1555 813 231 24 33 chr6 127227038 127227248 -22289789 - B3 SINE B2 0 216 9 4 1555 402 114 0 0 chr6 127227298 127227368 -22289669 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 1555 266 299 95 30 chr6 127227371 127227540 -22289497 - L1MD LINE L1 -1969 4177 3998 4 1555 212 0 36 0 chr6 127227595 127227623 -22289414 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1555 948 157 39 22 chr6 127227711 127227893 -22289144 + B2_Mm2 SINE B2 5 189 -6 5 1555 207 0 0 0 chr6 127227946 127227969 -22289068 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1555 374 286 0 25 chr6 127228115 127228237 -22288800 - L1MD LINE L1 -2556 3590 3472 4 1555 327 266 25 0 chr6 127228240 127228319 -22288718 + RSINE1 SINE B4 17 97 -68 5 1555 184 0 62 31 chr6 127228388 127228420 -22288617 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1555 696 116 62 0 chr6 127228421 127228533 -22288504 - B1_Mus2 SINE Alu -12 135 17 5 1555 857 237 19 5 chr6 127228541 127228749 -22288288 - B3 SINE B2 -5 211 1 5 1555 346 253 74 20 chr6 127229057 127229206 -22287831 - L1MD LINE L1 -3104 3042 2886 4 1555 326 225 32 43 chr6 127229292 127229385 -22287652 + ID_B1 SINE B4 70 161 -63 5 1555 418 276 0 49 chr6 127229306 127229428 -22287609 + PB1D7 SINE Alu 5 120 0 5 1555 1326 218 23 19 chr6 127229561 127229823 -22287214 - ORR1C1 LTR MaLR -114 264 2 5 1555 3695 166 70 29 chr6 127229824 127230614 -22286423 - ORR1C1-int LTR MaLR 0 1509 688 5 1555 1488 189 143 14 chr6 127230663 127231017 -22286020 - MTD LTR MaLR 0 421 18 5 1555 324 0 0 0 chr6 127231018 127231054 -22285983 + (CAA)n Simple_repeat Simple_repeat 2 37 0 5 1555 1048 192 51 33 chr6 127231101 127231316 -22285721 - MTD LTR MaLR -5 414 196 5 1555 905 149 0 6 chr6 127231316 127231478 -22285559 + CT-rich Low_complexity Low_complexity 3 163 0 5 1555 21 36 0 0 chr6 127231478 127231506 -22285531 + AT_rich Low_complexity Low_complexity 1 28 0 5 1555 870 196 176 5 chr6 127232566 127232771 -22284266 - MTD LTR MaLR -179 240 1 5 1555 198 0 0 0 chr6 127232841 127232863 -22284174 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1555 414 302 42 0 chr6 127232907 127233026 -22284011 - B3A SINE B2 -73 125 2 5 1555 229 341 12 0 chr6 127233822 127233904 -22283133 + ID4 SINE ID 1 83 0 5 1555 752 289 35 28 chr6 127234605 127234893 -22282144 + B4A SINE B4 1 290 -2 5 1555 501 297 62 0 chr6 127234973 127235101 -22281936 - ID_B1 SINE B4 -10 214 79 5 1555 509 80 0 13 chr6 127235809 127235885 -22281152 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 1555 864 293 71 22 chr6 127235887 127236156 -22280881 - B4A SINE B4 -10 282 1 5 1555 816 210 97 5 chr6 127236333 127236529 -22280508 + ID_B1 SINE B4 3 216 -8 5 1555 212 288 15 15 chr6 127237347 127237414 -22279623 + MIRc SINE MIR 114 180 -88 5 1555 321 260 14 0 chr6 127237529 127237602 -22279435 - B4A SINE B4 0 292 219 5 1555 1145 232 10 0 chr6 127237599 127237806 -22279231 - B3 SINE B2 0 216 8 5 1555 261 0 0 0 chr6 127237817 127237846 -22279191 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 5 1555 573 15 0 0 chr6 127237846 127237912 -22279125 + (CAAG)n Simple_repeat Simple_repeat 1 66 0 5 1555 709 236 130 11 chr6 127237912 127238096 -22278941 - B4 SINE B4 -84 208 3 5 1555 259 341 64 41 chr6 127238253 127238424 -22278613 + ORR1E LTR MaLR 1 175 -184 5 1555 314 240 37 65 chr6 127238572 127238679 -22278358 - PB1D10 SINE Alu -11 106 3 5 1555 617 276 48 0 chr6 127239733 127239878 -22277159 + RSINE1 SINE B4 12 163 -2 5 1555 351 261 0 54 chr6 127239922 127240015 -22277022 + PB1D9 SINE Alu 15 102 -18 5 1555 309 282 119 67 chr6 127240774 127240968 -22276069 + ORR1E LTR MaLR 51 254 -105 5 1555 1057 192 24 14 chr6 127241039 127241250 -22275787 + B3 SINE B2 2 214 -2 5 1555 186 309 151 23 chr6 127241897 127241983 -22275054 + MIRc SINE MIR 106 202 -66 5 1555 470 329 111 62 chr6 127242464 127242915 -22274122 + MLT1J LTR MaLR 4 476 -36 5 1555 234 264 0 0 chr6 127243039 127243092 -22273945 - ID4 SINE ID -30 53 1 5 1555 198 0 0 0 chr6 127243133 127243155 -22273882 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1555 543 276 8 16 chr6 127243199 127243328 -22273709 - RSINE1 SINE B4 -36 129 2 5 1555 347 322 86 17 chr6 127243341 127243458 -22273579 - PB1 SINE Alu -2 125 1 5 1555 306 274 75 0 chr6 127244486 127244592 -22272445 + L1MDa LINE L1 18 131 -6502 5 1555 299 248 0 18 chr6 127244619 127244730 -22272307 + (ATG)n Simple_repeat Simple_repeat 3 111 0 5 1555 492 262 52 29 chr6 127244745 127244918 -22272119 - HAL1-2a_MD LINE L1 -502 2522 2346 5 1555 797 285 136 19 chr6 127244977 127245306 -22271731 + L1MDa LINE L1 3719 4061 -2476 5 1555 1939 158 31 71 chr6 127245306 127245688 -22271349 + ORR1B2 LTR MaLR 1 367 0 5 1555 797 285 136 19 chr6 127245688 127245991 -22271046 + L1MDa LINE L1 4062 4424 -2113 5 1555 225 267 33 0 chr6 127246035 127246095 -22270942 + L1MDa LINE L1 4419 4480 -2057 5 1555 605 49 12 0 chr6 127246121 127246202 -22270835 + (TTTTC)n Simple_repeat Simple_repeat 2 83 0 5 1555 615 206 38 8 chr6 127246203 127246335 -22270702 - B1F SINE Alu -13 136 1 5 1555 845 252 87 66 chr6 127246339 127246763 -22270274 + L1MDa LINE L1 4493 4925 -1612 5 1555 868 282 51 89 chr6 127246933 127247283 -22269754 + Lx8 LINE L1 6923 7259 -214 5 1555 821 217 79 5 chr6 127247442 127247632 -22269405 + B3 SINE B2 1 204 -12 5 1555 273 57 0 0 chr6 127247635 127247670 -22269367 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1555 365 333 64 32 chr6 127247686 127247906 -22269131 - Tigger5 DNA MER2_type -40 2366 2140 5 1555 228 301 107 38 chr6 127247986 127248145 -22268892 + MIRb SINE MIR 29 198 -70 5 1555 1567 270 17 30 chr6 127248895 127249300 -22267737 + MTD LTR MaLR 6 405 -14 5 1555 1153 271 220 43 chr6 127249303 127250098 -22266939 + L1MC1 LINE L1 67 1002 -5506 5 1555 321 284 0 0 chr6 127250101 127250175 -22266862 + RSINE1 SINE B4 1 74 -91 5 1555 323 275 164 31 chr6 127250274 127250385 -22266652 + L1MC1 LINE L1 1065 1183 -5325 5 1555 1477 248 96 53 chr6 127250385 127250874 -22266163 - RLTR18B LTR ERVK -2 510 1 5 1555 323 275 164 31 chr6 127250874 127251055 -22265982 + L1MC1 LINE L1 1184 1396 -5112 5 1555 444 320 117 26 chr6 127251111 127251614 -22265423 + L1MC1 LINE L1 4493 5041 -1280 5 1555 518 258 112 28 chr6 127251632 127251872 -22265165 + L1MC1 LINE L1 5191 5451 -870 5 1555 1800 310 114 26 chr6 127251912 127252894 -22264143 + L1MC1 LINE L1 5436 6503 -5 5 1555 412 294 164 18 chr6 127252902 127253409 -22263628 + L1ME2 LINE L1 5328 5907 -257 5 1555 400 321 38 0 chr6 127253424 127253555 -22263482 + B1F SINE Alu 9 144 -5 5 1555 261 254 60 0 chr6 127253568 127253635 -22263402 + ID4 SINE ID 3 73 -10 5 1555 683 235 30 34 chr6 127253834 127253981 -22263056 + RSINE1 SINE B4 5 151 -14 5 1555 378 0 0 0 chr6 127253982 127254024 -22263013 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1555 342 0 0 0 chr6 127254024 127254061 -22262976 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1555 1104 230 146 54 chr6 127254236 127254572 -22262465 - ORR1D2 LTR MaLR -1 369 3 5 1555 226 258 81 0 chr6 127254580 127254642 -22262395 - MTD LTR MaLR -330 89 23 5 1555 267 31 0 0 chr6 127254665 127254697 -22262340 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1555 1117 65 0 0 chr6 127254697 127254835 -22262202 - B1_Mus1 SINE Alu -9 139 2 5 1555 657 274 76 0 chr6 127255080 127255277 -22261760 - B3 SINE B2 -4 212 1 5 1555 597 277 91 42 chr6 127255618 127256039 -22260998 + L1MC4a LINE L1 6142 6577 -1465 5 1555 1295 80 0 4 chr6 127256113 127256603 -22260434 + (CA)n Simple_repeat Simple_repeat 1 487 0 5 1555 732 54 0 0 chr6 127256740 127256833 -22260204 + (GGGGA)n Simple_repeat Simple_repeat 1 93 0 5 1555 474 308 0 0 chr6 127256838 127256984 -22260053 + L1MC4a LINE L1 6895 7040 -955 5 1555 399 299 14 7 chr6 127257216 127257354 -22259683 + L1MC4a LINE L1 7847 7985 -10 5 1555 1099 229 21 25 chr6 127258068 127258310 -22258727 - ORR1D2 LTR MaLR 0 370 130 5 1555 785 248 43 14 chr6 127259387 127259596 -22257441 + ID_B1 SINE B4 3 217 -7 5 1555 902 111 318 12 chr6 127260473 127260646 -22256391 - URR1A DNA MER1_type 0 226 1 5 1555 1222 259 74 8 chr6 127260901 127261252 -22255785 - MTEa LTR MaLR -3 376 3 5 1555 186 321 63 13 chr6 127262418 127262497 -22254540 + L3 LINE CR1 4385 4467 -22 5 1555 1888 203 79 23 chr6 127263671 127264064 -22252973 + MTD LTR MaLR 5 419 0 5 1555 595 128 40 11 chr6 127264310 127264484 -22252553 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1555 372 279 44 44 chr6 127264522 127264657 -22252380 - B4A SINE B4 0 292 158 5 1555 337 247 0 88 chr6 127264704 127264806 -22252231 + B4A SINE B4 200 292 0 5 1555 207 136 0 43 chr6 127264809 127264855 -22252182 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1555 678 250 0 40 chr6 127265255 127265405 -22251632 - ID_B1 SINE B4 0 224 81 5 1555 425 238 12 0 chr6 127265595 127265679 -22251358 + PB1D10 SINE Alu 15 99 -18 5 1555 636 26 0 0 chr6 127265680 127265758 -22251279 + (TG)n Simple_repeat Simple_repeat 2 79 0 5 1555 253 289 145 0 chr6 127266496 127266579 -22250458 + B1F SINE Alu 37 131 -18 5 1555 883 152 7 20 chr6 127266580 127266728 -22250309 + B1_Mus1 SINE Alu 3 148 0 5 1555 321 26 0 0 chr6 127267609 127267647 -22249390 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1555 608 262 14 20 chr6 127268059 127268207 -22248830 - ID_B1 SINE B4 0 224 78 5 1555 360 294 166 0 chr6 127268423 127268556 -22248481 + B2_Mm2 SINE B2 1 154 -41 5 1555 306 0 0 0 chr6 127268556 127268590 -22248447 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1555 360 294 166 0 chr6 127268590 127268619 -22248418 + B2_Mm2 SINE B2 155 189 -6 5 1555 305 256 13 13 chr6 127268946 127269025 -22248012 + ID4 SINE ID 2 80 -3 5 1555 225 155 345 0 chr6 127270016 127270074 -22246963 + PB1 SINE Alu 47 124 -3 5 1555 183 80 0 0 chr6 127270158 127270183 -22246854 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 5 1555 180 0 0 0 chr6 127270718 127270738 -22246299 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1556 512 311 126 65 chr6 127271063 127271476 -22245561 + L2a LINE L2 2978 3415 -11 5 1556 222 37 0 0 chr6 127271483 127271510 -22245527 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 5 1556 186 385 32 32 chr6 127271833 127271927 -22245110 - MIRb SINE MIR -17 251 158 5 1556 504 86 0 0 chr6 127272083 127272153 -22244884 + (GAAA)n Simple_repeat Simple_repeat 1 70 0 5 1556 604 176 8 8 chr6 127272145 127272277 -22244760 + GA-rich Low_complexity Low_complexity 2 133 0 5 1556 227 269 0 0 chr6 127273290 127273342 -22243695 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1556 579 269 15 22 chr6 127273584 127273721 -22243316 + RSINE1 SINE B4 1 136 -29 5 1556 222 37 0 0 chr6 127273733 127273760 -22243277 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1556 669 274 0 0 chr6 127273823 127273969 -22243068 + B1_Mur2 SINE Alu 3 148 -1 5 1556 185 215 144 122 chr6 127275338 127275428 -22241609 + MIRc SINE MIR 88 179 -89 6 1556 223 28 27 27 chr6 127275441 127275478 -22241559 + (GGGAGA)n Simple_repeat Simple_repeat 6 42 0 6 1556 213 246 42 28 chr6 127275857 127275928 -22241109 + L3 LINE CR1 4107 4178 -311 6 1556 573 15 0 0 chr6 127277927 127277993 -22239044 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 6 1556 818 238 88 65 chr6 127278090 127278306 -22238731 - B4A SINE B4 -8 284 64 6 1556 454 237 94 78 chr6 127278820 127278948 -22238089 + RSINE1 SINE B4 3 132 -33 6 1556 206 114 0 83 chr6 127278955 127279003 -22238034 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 1556 240 270 99 10 chr6 127279108 127279209 -22237828 - MIRc SINE MIR -90 178 69 6 1556 207 273 76 43 chr6 127279712 127279804 -22237233 - MIR3 SINE MIR -23 185 91 6 1556 186 270 132 26 chr6 127279806 127279882 -22237155 - MIR3 SINE MIR -25 183 100 6 1556 307 279 19 139 chr6 127280868 127281026 -22236011 - B1F1 SINE Alu -9 140 2 6 1556 739 265 94 10 chr6 127281081 127281283 -22235754 - ID_B1 SINE B4 -4 220 2 6 1556 381 22 0 0 chr6 127282246 127282292 -22234745 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1556 364 143 0 0 chr6 127282299 127282355 -22234682 + ID_B1 SINE B4 168 223 -1 6 1556 198 0 0 0 chr6 127282359 127282381 -22234656 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1556 494 224 20 0 chr6 127282801 127282899 -22234138 + PB1D10 SINE Alu 1 100 -17 6 1556 1206 112 37 11 chr6 127283059 127283215 -22233822 + B2_Mm2 SINE B2 2 157 -38 6 1556 225 0 0 0 chr6 127283215 127283240 -22233797 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 6 1556 1206 112 37 11 chr6 127283240 127283272 -22233765 + B2_Mm2 SINE B2 158 194 -1 6 1556 390 91 0 0 chr6 127283515 127283570 -22233467 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1556 301 238 44 67 chr6 127283574 127283664 -22233373 + HAL1-3A_ME LINE L1 1975 2062 -796 6 1556 653 171 137 60 chr6 127283903 127284071 -22232966 - URR1A DNA MER1_type -45 181 1 6 1556 228 318 75 69 chr6 127283937 127284096 -22232941 + CYRA11_Mm Unknown Y-chromosome 249 408 -209 6 1556 527 0 16 0 chr6 127284564 127284627 -22232410 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1556 1183 58 0 0 chr6 127284819 127284957 -22232080 - B1_Mm SINE Alu -9 138 1 6 1556 633 14 0 0 chr6 127285092 127285166 -22231871 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1556 294 50 0 0 chr6 127285221 127285261 -22231776 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1556 188 315 0 27 chr6 127285657 127285732 -22231305 + L2b LINE L2 3262 3334 -41 6 1556 188 191 118 128 chr6 127288143 127288245 -22228792 - MIRc SINE MIR -98 170 70 6 1556 693 195 16 8 chr6 127288308 127288437 -22228600 + B1_Mur1 SINE Alu 18 147 -2 6 1556 833 278 42 0 chr6 127289626 127289838 -22227199 + ID_B1 SINE B4 2 222 -2 6 1556 1169 155 82 0 chr6 127289944 127290150 -22226887 - MTC LTR MaLR -198 223 1 6 1556 663 77 44 0 chr6 127290271 127290362 -22226675 - B2_Mm2 SINE B2 -100 95 1 6 1556 861 294 79 52 chr6 127290362 127290775 -22226262 + MER31A LTR ERV1 57 481 -4 6 1556 1331 101 11 5 chr6 127292444 127292634 -22224403 + B2_Mm1a SINE B2 3 193 0 6 1556 525 205 205 0 chr6 127292655 127292767 -22224270 - B1_Mur1 SINE Alu -13 136 2 6 1556 253 260 107 27 chr6 127293669 127293734 -22223303 + ID4 SINE ID 2 74 -9 6 1556 911 78 8 0 chr6 127293734 127293863 -22223174 + (GGAA)n Simple_repeat Simple_repeat 1 130 0 6 1556 203 133 0 0 chr6 127294659 127294689 -22222348 + (TCC)n Simple_repeat Simple_repeat 1 30 0 6 1556 231 246 0 136 chr6 127295548 127295614 -22221423 + B1F SINE Alu 1 57 -92 6 1556 297 75 0 0 chr6 127295849 127295889 -22221148 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 1556 679 106 56 14 chr6 127295906 127296049 -22220988 + GA-rich Low_complexity Low_complexity 5 153 0 6 1556 317 246 14 0 chr6 127296119 127296188 -22220849 + B4A SINE B4 1 70 -222 6 1556 286 240 126 29 chr6 127296356 127296459 -22220578 - PB1D10 SINE Alu -4 113 1 6 1556 196 358 126 0 chr6 127296468 127296563 -22220474 - MIR SINE MIR -69 139 33 6 1556 405 0 0 0 chr6 127297219 127297264 -22219773 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1556 252 0 0 0 chr6 127297359 127297387 -22219650 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1556 557 157 29 11 chr6 127297405 127297579 -22219458 + (TG)n Simple_repeat Simple_repeat 1 177 0 6 1556 296 168 29 10 chr6 127297602 127297704 -22219333 + (TG)n Simple_repeat Simple_repeat 2 105 0 6 1556 441 0 0 0 chr6 127297706 127297755 -22219282 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1556 723 134 5 27 chr6 127297809 127297993 -22219044 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1556 575 155 28 11 chr6 127298014 127298190 -22218847 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1556 575 155 28 11 chr6 127298213 127298389 -22218648 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1556 972 132 12 32 chr6 127298412 127298749 -22218288 + (TG)n Simple_repeat Simple_repeat 1 330 0 6 1556 334 297 0 106 chr6 127298749 127298881 -22218156 - RSINE1 SINE B4 0 165 48 6 1556 598 252 79 65 chr6 127298883 127299099 -22217938 - ID_B1 SINE B4 -4 220 2 6 1556 203 274 109 59 chr6 127299420 127299521 -22217516 + MIR SINE MIR 35 140 -68 6 1556 209 205 0 0 chr6 127300512 127300551 -22216486 + (ACTG)n Simple_repeat Simple_repeat 1 39 0 6 1556 347 145 14 0 chr6 127301124 127301193 -22215844 + GA-rich Low_complexity Low_complexity 2 71 0 6 1556 3036 54 21 5 chr6 127301394 127301783 -22215254 + MTB LTR MaLR 1 395 -5 6 1556 251 232 0 18 chr6 127302072 127302129 -22214908 + GA-rich Low_complexity Low_complexity 4 59 0 6 1556 247 250 74 74 chr6 127303471 127303566 -22213471 + MLT1J LTR MaLR 405 499 -13 6 1556 1729 144 114 64 chr6 127303825 127304167 -22212870 - ORR1B2 LTR MaLR -8 359 1 6 1556 341 300 112 40 chr6 127304171 127304296 -22212741 + B4A SINE B4 1 134 -158 6 1556 538 234 78 8 chr6 127304374 127304503 -22212534 + B4A SINE B4 133 270 -22 6 1556 609 264 11 19 chr6 127304609 127304752 -22212285 + ID_B1 SINE B4 101 245 -47 6 1556 249 33 0 0 chr6 127305529 127305559 -22211478 + (GGGTG)n Simple_repeat Simple_repeat 2 31 0 6 1556 252 0 0 0 chr6 127305721 127305749 -22211288 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 6 1556 736 218 7 20 chr6 127305872 127306022 -22211015 - B1_Mur1 SINE Alu -1 148 1 6 1556 485 299 203 0 chr6 127306022 127306192 -22210845 - B4A SINE B4 -69 223 18 6 1556 1452 80 5 0 chr6 127308626 127308813 -22208224 + B2_Mm1a SINE B2 2 189 -4 6 1556 239 0 0 31 chr6 127308857 127308889 -22208148 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1556 594 0 0 0 chr6 127310166 127310232 -22206805 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 6 1556 364 319 148 40 chr6 127310374 127310671 -22206366 - L1MC4a LINE L1 -1825 6057 5729 6 1556 306 164 0 0 chr6 127310694 127310749 -22206288 + CT-rich Low_complexity Low_complexity 3 57 0 6 1556 250 322 102 25 chr6 127310793 127310825 -22206212 + B1F SINE Alu 11 137 -12 6 1556 335 282 0 12 chr6 127310825 127310911 -22206126 + ID_B1 SINE B4 128 212 -12 6 1556 1041 102 0 0 chr6 127310911 127311077 -22205960 + (CAG)n Simple_repeat Simple_repeat 1 166 0 6 1556 462 229 42 17 chr6 127311329 127311449 -22205588 + B4A SINE B4 2 124 -168 6 1556 2769 159 97 19 chr6 127311458 127312163 -22204874 - RMER19B LTR ERVK 0 902 95 6 1556 456 221 90 45 chr6 127314289 127314445 -22202592 - MER5A1 DNA MER1_type -2 164 2 6 1556 190 288 16 33 chr6 127314734 127314795 -22202242 + L3 LINE CR1 4428 4487 -2 6 1556 648 293 132 18 chr6 127315791 127316010 -22201027 + B4A SINE B4 27 270 -22 6 1556 657 79 0 0 chr6 127316017 127316118 -22200919 + (CA)n Simple_repeat Simple_repeat 2 102 0 6 1556 646 116 9 59 chr6 127316138 127316248 -22200789 - B1_Mur1 SINE Alu -3 146 44 6 1556 256 268 150 30 chr6 127316170 127316270 -22200767 - MT2B LTR ERVL -323 278 167 6 1556 486 263 98 49 chr6 127316373 127316557 -22200480 - B3A SINE B2 -4 194 2 6 1556 241 277 19 113 chr6 127316883 127316989 -22200048 - L1M5 LINE L1 -1150 4996 4901 6 1556 384 291 0 0 chr6 127317072 127317151 -22199886 - L1M5 LINE L1 -3329 2817 2739 6 1556 211 138 0 0 chr6 127317173 127317202 -22199835 + ID2 SINE ID 17 45 -38 6 1556 946 101 13 0 chr6 127317222 127317371 -22199666 + (GAA)n Simple_repeat Simple_repeat 3 153 0 6 1556 669 149 0 0 chr6 127317417 127317531 -22199506 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 6 1556 573 115 0 0 chr6 127317781 127317868 -22199169 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 6 1556 657 158 0 0 chr6 127318533 127318653 -22198384 + CT-rich Low_complexity Low_complexity 3 122 0 6 1556 915 157 7 0 chr6 127318655 127318795 -22198242 - B1_Mus2 SINE Alu -6 141 1 6 1556 1344 280 133 31 chr6 127318824 127318984 -22198053 - Lx9 LINE L1 -4 7640 7486 6 1556 195 100 0 0 chr6 127318984 127319014 -22198023 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1556 1344 280 133 31 chr6 127319014 127319531 -22197506 - Lx9 LINE L1 -159 7485 6894 6 1556 442 69 42 0 chr6 127319537 127319609 -22197428 - B2_Mm2 SINE B2 -5 190 116 6 1556 1609 127 14 14 chr6 127319635 127319923 -22197114 - L1_Mur2 LINE L1 -397 5480 5193 6 1556 871 107 0 0 chr6 127319923 127320045 -22196992 - B2_Mm2 SINE B2 -72 123 2 6 1556 2284 226 106 34 chr6 127320046 127320338 -22196699 + L1_Rod LINE L1 4938 5224 -623 6 1556 182 62 31 0 chr6 127320338 127320370 -22196667 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 6 1556 2284 226 106 34 chr6 127320370 127320864 -22196173 + L1_Rod LINE L1 5225 5780 -67 6 1556 198 0 0 0 chr6 127321184 127321206 -22195831 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1556 464 336 0 0 chr6 127321210 127321332 -22195705 + ID_B1 SINE B4 84 205 -19 6 1556 401 331 50 0 chr6 127321332 127321349 -22195688 + B1F SINE Alu 3 148 -1 6 1556 189 171 0 0 chr6 127321351 127321386 -22195651 + (ATG)n Simple_repeat Simple_repeat 1 35 0 6 1556 232 265 59 0 chr6 127321394 127321462 -22195575 + ID4 SINE ID 12 83 0 6 1556 229 164 13 52 chr6 127321465 127321542 -22195495 + (CAA)n Simple_repeat Simple_repeat 2 75 0 6 1556 221 249 183 30 chr6 127321990 127322125 -22194912 - MIR3 SINE MIR -105 157 4 6 1556 273 75 0 0 chr6 127322337 127322377 -22194660 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 6 1556 369 0 0 0 chr6 127322377 127322418 -22194619 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1556 431 35 18 0 chr6 127322420 127322477 -22194560 + (TA)n Simple_repeat Simple_repeat 1 58 0 7 1556 261 0 0 0 chr6 127322477 127322505 -22194532 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1556 213 178 44 0 chr6 127322675 127322720 -22194317 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 7 1556 891 182 7 0 chr6 127322856 127323004 -22194033 - B1_Mur2 SINE Alu 0 149 1 7 1556 248 299 15 0 chr6 127323331 127323398 -22193639 + ID2 SINE ID 3 70 -13 7 1556 450 0 0 0 chr6 127323398 127323448 -22193589 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1556 537 44 0 0 chr6 127323709 127323777 -22193260 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1556 231 269 112 51 chr6 127323892 127323990 -22193047 - MLT1A1 LTR MaLR -37 371 268 7 1556 717 337 44 38 chr6 127324246 127324561 -22192476 - MER58B DNA MER1_type -16 325 9 7 1556 1845 131 68 18 chr6 127325199 127325525 -22191512 + MTD LTR MaLR 44 385 -34 7 1556 244 263 65 13 chr6 127326438 127326515 -22190522 - ID4 SINE ID 0 83 3 7 1556 630 240 0 30 chr6 127326529 127326662 -22190375 - RSINE1 SINE B4 -36 129 1 7 1556 271 358 26 44 chr6 127326837 127327004 -22190033 + MIR SINE MIR 31 205 -63 7 1556 379 269 126 99 chr6 127327014 127327237 -22189800 + B4 SINE B4 2 230 -62 7 1556 312 27 0 0 chr6 127327251 127327288 -22189749 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 1556 348 83 0 0 chr6 127327290 127327338 -22189699 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1556 1344 35 110 6 chr6 127327449 127327607 -22189430 + B2_Mm2 SINE B2 1 177 -18 7 1556 186 43 0 0 chr6 127327607 127327630 -22189407 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1556 1344 35 110 6 chr6 127327630 127327644 -22189393 + B2_Mm2 SINE B2 178 191 -4 7 1556 329 277 152 58 chr6 127330005 127330143 -22186894 - MIRb SINE MIR -21 247 97 7 1556 1421 36 0 5 chr6 127330222 127330445 -22186592 + (CCA)n Simple_repeat Simple_repeat 1 221 0 7 1556 580 259 9 0 chr6 127330586 127330698 -22186339 - PB1D7 SINE Alu -5 115 3 7 1556 332 331 42 7 chr6 127330712 127330855 -22186182 - B1F1 SINE Alu 0 149 2 7 1556 804 157 0 0 chr6 127331763 127332109 -22184928 + (TG)n Simple_repeat Simple_repeat 1 346 0 7 1556 324 194 13 65 chr6 127332138 127332215 -22184822 - HAL1-3A_ME LINE L1 -831 2027 1955 7 1556 433 232 52 10 chr6 127332525 127332621 -22184416 + LFSINE_Vert SINE SINE 3 102 -357 7 1556 21 0 0 0 chr6 127333151 127333172 -22183865 + AT_rich Low_complexity Low_complexity 1 21 0 7 1556 222 91 0 0 chr6 127333361 127333394 -22183643 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 7 1556 244 238 9 9 chr6 127333571 127333677 -22183360 + (TGGA)n Simple_repeat Simple_repeat 4 109 0 7 1556 283 323 179 6 chr6 127333741 127333778 -22183259 - B4 SINE B4 -26 266 117 7 1556 543 230 18 0 chr6 127333778 127333891 -22183146 - PB1D9 SINE Alu 0 120 6 7 1556 329 195 88 99 chr6 127333813 127333904 -22183133 - MT2B LTR ERVL -363 238 149 7 1556 573 105 0 0 chr6 127334143 127334229 -22182808 + (TCCA)n Simple_repeat Simple_repeat 3 88 0 7 1556 339 262 12 0 chr6 127334935 127335015 -22182022 - ID4 SINE ID -2 81 1 7 1556 459 0 0 0 chr6 127335167 127335218 -22181819 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1556 272 232 26 9 chr6 127336837 127336972 -22180065 + (TA)n Simple_repeat Simple_repeat 1 137 0 7 1556 480 317 105 75 chr6 127336972 127337448 -22179589 + L1MEg LINE L1 1270 1793 -4840 7 1556 30 27 0 0 chr6 127337607 127337644 -22179393 + AT_rich Low_complexity Low_complexity 1 37 0 7 1556 348 111 0 0 chr6 127337715 127337769 -22179268 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1556 312 335 166 12 chr6 127337965 127338128 -22178909 + MER20 DNA MER1_type 32 219 0 7 1556 632 270 67 31 chr6 127338169 127338364 -22178673 + Tigger5 DNA MER2_type 11 212 -2194 7 1556 536 264 182 5 chr6 127338413 127338611 -22178426 + Tigger5 DNA MER2_type 2169 2401 -5 7 1556 507 33 0 0 chr6 127339069 127339130 -22177907 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1556 875 135 6 0 chr6 127339152 127339308 -22177729 + (GA)n Simple_repeat Simple_repeat 1 157 0 7 1556 390 268 1 39 chr6 127339829 127339944 -22177093 + PB1D10 SINE Alu 3 112 -5 7 1556 232 200 185 0 chr6 127339979 127340044 -22176993 + ID4 SINE ID 3 79 -4 7 1556 267 241 0 0 chr6 127340075 127340158 -22176879 + (CA)n Simple_repeat Simple_repeat 1 83 0 7 1556 258 156 0 0 chr6 127340209 127340254 -22176783 + (TTG)n Simple_repeat Simple_repeat 1 45 0 7 1556 219 296 0 0 chr6 127340837 127340891 -22176146 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1556 251 358 49 24 chr6 127340892 127341015 -22176022 + L4 LINE RTE 1793 1918 -111 7 1556 303 186 214 10 chr6 127341019 127341048 -22175989 - B3 SINE B2 0 216 182 7 1556 660 77 0 0 chr6 127341048 127341139 -22175898 + (TATG)n Simple_repeat Simple_repeat 4 94 0 7 1556 303 186 214 10 chr6 127341139 127341207 -22175830 - B3 SINE B2 -35 181 99 7 1556 233 360 30 0 chr6 127341219 127341319 -22175718 + L2a LINE L2 3299 3401 -25 7 1556 271 295 86 35 chr6 127341465 127341581 -22175456 + MER45A DNA Tip100 38 159 -19 7 1556 486 0 0 0 chr6 127341671 127341725 -22175312 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 7 1556 1021 74 0 0 chr6 127341725 127341860 -22175177 - B1_Mus2 SINE Alu -11 136 2 7 1556 21 0 0 0 chr6 127341921 127341942 -22175095 + AT_rich Low_complexity Low_complexity 1 21 0 7 1556 721 255 0 0 chr6 127341944 127342085 -22174952 - ID_B1 SINE B4 0 224 84 7 1556 372 279 118 61 chr6 127342154 127342383 -22174654 - Tigger13a DNA MER2_type -256 515 274 7 1556 1264 233 127 30 chr6 127342596 127342959 -22174078 + MTD LTR MaLR 6 403 -16 7 1556 254 29 29 0 chr6 127343482 127343517 -22173520 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1556 183 240 60 0 chr6 127343636 127343686 -22173351 + MIR SINE MIR 86 138 -70 7 1556 188 88 0 56 chr6 127344651 127344687 -22172350 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 7 1556 9049 5 0 0 chr6 127344967 127345948 -22171089 - L1Md_T LINE L1 0 6582 5602 7 1556 508 284 13 39 chr6 127346197 127346351 -22170686 + RSINE1 SINE B4 3 152 -13 7 1556 375 23 0 0 chr6 127346370 127346414 -22170623 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1556 477 0 0 0 chr6 127346484 127346537 -22170500 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 7 1556 463 194 65 0 chr6 127347789 127347882 -22169155 + PB1D7 SINE Alu 5 103 -17 7 1556 270 136 0 0 chr6 127347891 127347935 -22169102 + (GGA)n Simple_repeat Simple_repeat 2 45 0 7 1556 558 164 8 33 chr6 127348150 127348250 -22168787 + ORR1B2 LTR MaLR 1 97 -270 7 1556 1321 177 87 15 chr6 127348250 127348569 -22168468 + ORR1B2 LTR MaLR 1 347 -47 7 1556 512 73 0 12 chr6 127349274 127349357 -22167680 + (CCAA)n Simple_repeat Simple_repeat 2 83 0 7 1556 229 224 186 11 chr6 127349507 127349614 -22167423 - MIR SINE MIR -33 235 106 7 1556 640 290 13 0 chr6 127349908 127350063 -22166974 + B3A SINE B2 4 160 -38 7 1556 221 272 85 21 chr6 127350198 127350292 -22166745 - B4 SINE B4 -188 104 5 7 1556 206 192 0 19 chr6 127350532 127350585 -22166452 + CT-rich Low_complexity Low_complexity 2 53 0 7 1556 582 238 96 152 chr6 127350705 127350903 -22166134 - B3A SINE B2 -8 187 1 7 1556 457 226 21 0 chr6 127350953 127351046 -22165991 - PB1D10 SINE Alu -6 111 17 7 1556 228 217 0 169 chr6 127351001 127351084 -22165953 - B4A SINE B4 -146 146 78 7 1556 703 231 8 0 chr6 127351145 127351279 -22165758 + B1_Mur1 SINE Alu 2 136 -13 7 1556 279 0 0 0 chr6 127351280 127351311 -22165726 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1556 1437 266 126 90 chr6 127351322 127351664 -22165373 - L1MCa LINE L1 -4883 1625 1268 7 1556 483 18 0 0 chr6 127351664 127351720 -22165317 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1556 1437 266 126 90 chr6 127351720 127352096 -22164941 - L1MCa LINE L1 -5241 1267 951 7 1556 1019 129 0 6 chr6 127352096 127352275 -22164762 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 7 1556 1437 266 126 90 chr6 127352275 127352596 -22164441 - L1MCa LINE L1 -5558 950 549 7 1556 249 257 188 28 chr6 127352859 127353003 -22164034 - L1MCa LINE L1 -6269 239 73 7 1556 1279 47 75 17 chr6 127353055 127353228 -22163809 - B2_Mm1t SINE B2 -9 184 2 7 1556 303 292 77 92 chr6 127353405 127353601 -22163436 + MER20 DNA MER1_type 4 196 -23 7 1556 204 156 0 0 chr6 127353955 127353987 -22163050 - MIRm SINE MIR -146 130 99 7 1556 213 263 0 17 chr6 127356204 127356262 -22160775 - MIR SINE MIR -55 153 97 7 1556 405 279 45 9 chr6 127356990 127357102 -22159935 + ID_B1 SINE B4 82 197 -27 7 1556 342 299 0 0 chr6 127357278 127357435 -22159602 + (CA)n Simple_repeat Simple_repeat 2 158 0 7 1556 513 32 0 0 chr6 127358237 127358300 -22158737 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1556 191 36 0 35 chr6 127358341 127358370 -22158667 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7 1556 4366 66 0 0 chr6 127358389 127358921 -22158116 + L1_Mus1 LINE L1 6036 6567 0 7 1556 607 271 42 47 chr6 127359447 127359660 -22157377 - B3 SINE B2 -4 212 1 7 1556 311 0 26 0 chr6 127359660 127359699 -22157338 + (CAA)n Simple_repeat Simple_repeat 3 42 0 7 1556 314 195 0 12 chr6 127361690 127361773 -22155264 + GA-rich Low_complexity Low_complexity 2 83 0 7 1556 213 159 23 0 chr6 127362092 127362136 -22154901 + T-rich Low_complexity Low_complexity 4 48 0 7 1556 22 0 0 0 chr6 127362257 127362279 -22154758 + AT_rich Low_complexity Low_complexity 1 22 0 7 1556 603 269 101 11 chr6 127362350 127362538 -22154499 - ID_B1 SINE B4 -8 216 12 7 1556 1214 279 101 21 chr6 127362853 127363241 -22153796 - MTD LTR MaLR 0 419 1 7 1556 650 260 289 30 chr6 127364643 127364867 -22152170 - B4 SINE B4 -7 285 3 7 1556 880 259 56 109 chr6 127364872 127365267 -22151770 + MTEa LTR MaLR 2 375 -4 7 1556 230 267 0 32 chr6 127365270 127365332 -22151705 + GA-rich Low_complexity Low_complexity 4 63 0 8 1556 191 114 29 0 chr6 127365346 127365381 -22151656 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 8 1556 468 0 0 0 chr6 127365459 127365511 -22151526 + (TC)n Simple_repeat Simple_repeat 2 53 0 8 1556 258 95 0 0 chr6 127365511 127365552 -22151485 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1556 650 270 26 0 chr6 127365553 127365705 -22151332 - B3A SINE B2 -34 164 9 8 1556 378 222 17 23 chr6 127366994 127367169 -22149868 + (ATG)n Simple_repeat Simple_repeat 1 174 0 8 1556 275 231 15 0 chr6 127367171 127367236 -22149801 + (ATGGTG)n Simple_repeat Simple_repeat 2 67 0 8 1556 386 255 152 49 chr6 127367610 127367833 -22149204 + MIRc SINE MIR 5 250 -18 8 1556 740 222 164 0 chr6 127368749 127368920 -22148117 - ID_B1 SINE B4 -6 218 20 8 1556 282 222 54 27 chr6 127368862 127368936 -22148101 - ID4 SINE ID -7 76 1 8 1556 387 0 0 0 chr6 127369243 127369286 -22147751 + (TCCC)n Simple_repeat Simple_repeat 1 43 0 8 1556 632 138 9 0 chr6 127369509 127369625 -22147412 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 8 1556 290 243 170 28 chr6 127369908 127370010 -22147027 + MLT1F-int LTR MaLR 16 132 -1357 8 1556 809 310 61 29 chr6 127370010 127370352 -22146685 - ORR1D2 LTR MaLR 0 370 18 8 1556 1049 347 54 24 chr6 127370338 127370875 -22146162 + MLT1F-int LTR MaLR 98 650 -839 8 1556 1079 199 20 0 chr6 127370918 127371114 -22145923 + B3 SINE B2 1 200 -16 8 1556 354 97 0 79 chr6 127371121 127371222 -22145815 + G-rich Low_complexity Low_complexity 2 94 0 8 1556 1401 45 0 0 chr6 127371223 127371400 -22145637 + (GGGAGA)n Simple_repeat Simple_repeat 2 178 0 8 1556 237 318 24 0 chr6 127371407 127371492 -22145545 + MLT1F-int LTR MaLR 732 818 -671 8 1556 509 310 84 70 chr6 127372325 127372668 -22144369 + ORR1E LTR MaLR 1 348 -11 8 1556 383 295 112 15 chr6 127373299 127373433 -22143604 + B1F SINE Alu 1 147 -2 8 1556 577 238 6 81 chr6 127373970 127374130 -22142907 + B1F SINE Alu 1 148 -1 8 1556 315 49 0 0 chr6 127374130 127374171 -22142866 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 8 1556 377 58 43 14 chr6 127374177 127374247 -22142790 + (CA)n Simple_repeat Simple_repeat 1 72 0 8 1556 251 194 39 163 chr6 127374252 127374381 -22142656 + MER33 DNA MER1_type 137 249 -75 8 1556 21 0 0 56 chr6 127374486 127374503 -22142534 + AT_rich Low_complexity Low_complexity 1 17 0 8 1556 1170 106 22 16 chr6 127374503 127374686 -22142351 - B2_Mm1t SINE B2 -9 184 1 8 1556 21 0 0 56 chr6 127374686 127374704 -22142333 + AT_rich Low_complexity Low_complexity 1 17 0 8 1556 228 238 0 0 chr6 127374920 127374962 -22142075 + polypyrimidine Low_complexity Low_complexity 1 42 0 8 1556 245 158 35 17 chr6 127374962 127375020 -22142017 - B1F2 SINE Alu -51 98 40 8 1556 242 57 13 79 chr6 127375024 127375100 -22141937 + (TCC)n Simple_repeat Simple_repeat 1 71 0 8 1556 317 111 18 18 chr6 127375102 127375157 -22141880 - B1_Mur4 SINE Alu -91 59 5 8 1556 268 161 15 61 chr6 127375157 127375168 -22141869 - ID_B1 SINE B4 -85 139 77 8 1556 225 387 63 16 chr6 127376792 127376918 -22140119 - L2b LINE L2 -2 3373 3242 8 1556 391 332 139 29 chr6 127377151 127377359 -22139678 - MER2 DNA MER2_type 0 345 115 8 1556 894 204 76 35 chr6 127377365 127377563 -22139474 + B3 SINE B2 1 206 -10 8 1556 624 62 0 0 chr6 127377644 127377725 -22139312 + (GA)n Simple_repeat Simple_repeat 2 82 0 8 1556 278 324 66 9 chr6 127377736 127377842 -22139195 - MLT1H2 LTR MaLR -311 178 67 8 1556 198 0 0 0 chr6 127377850 127377872 -22139165 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 1556 899 193 0 0 chr6 127378236 127378386 -22138651 - B1_Mur4 SINE Alu 0 150 1 8 1556 26 64 0 0 chr6 127378391 127378438 -22138599 + AT_rich Low_complexity Low_complexity 1 47 0 8 1556 258 308 88 22 chr6 127378953 127379089 -22137948 + MLT1J LTR MaLR 368 512 0 8 1556 337 262 35 17 chr6 127379242 127379379 -22137658 + L1M5 LINE L1 4076 4222 -1924 8 1556 182 37 37 0 chr6 127379683 127379710 -22137327 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 8 1556 533 300 93 0 chr6 127379726 127379866 -22137171 + RSINE1 SINE B4 13 165 0 8 1556 867 248 126 54 chr6 127380600 127380988 -22136049 + MTD LTR MaLR 2 417 -2 8 1556 414 0 0 0 chr6 127381608 127381654 -22135383 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1556 598 314 65 51 chr6 127381666 127381941 -22135096 - B4 SINE B4 -13 279 1 8 1556 240 262 0 47 chr6 127381952 127382016 -22135021 + MIRb SINE MIR 135 195 -73 8 1556 450 335 114 13 chr6 127382305 127382541 -22134496 - L3 LINE CR1 -223 4266 4007 8 1556 1206 61 0 0 chr6 127382556 127382703 -22134334 - B1_Mus2 SINE Alu 0 147 1 8 1556 229 324 0 0 chr6 127382823 127382891 -22134146 - ID2 SINE ID -15 68 1 8 1556 3678 77 0 2 chr6 127383294 127383764 -22133273 - L1_Mus4 LINE L1 -5 6631 6163 8 1556 180 0 0 0 chr6 127384451 127384471 -22132566 + (CTAAG)n Simple_repeat Simple_repeat 3 22 0 8 1556 473 321 125 23 chr6 127384574 127384966 -22132071 - L3 LINE CR1 -1471 3018 2587 8 1556 1044 52 89 0 chr6 127385587 127385722 -22131315 + B1_Mus2 SINE Alu 1 147 0 8 1556 539 250 88 10 chr6 127386370 127386564 -22130473 + MTE-int LTR MaLR 90 298 -1282 8 1556 1379 74 5 16 chr6 127386573 127386766 -22130271 - B2_Mm2 SINE B2 -3 192 2 8 1556 535 283 7 0 chr6 127386769 127386907 -22130130 + MTE-int LTR MaLR 1415 1553 -27 8 1556 719 261 31 12 chr6 127386992 127387187 -22129850 + B3A SINE B2 1 205 -11 8 1556 279 0 0 0 chr6 127387187 127387218 -22129819 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1556 673 273 87 48 chr6 127387218 127387230 -22129807 + B3 SINE B2 206 216 0 8 1556 468 288 104 79 chr6 127387248 127387489 -22129548 + ORR1E LTR MaLR 98 344 -15 8 1556 204 139 28 0 chr6 127387503 127387539 -22129498 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1556 333 250 0 0 chr6 127387718 127387794 -22129243 + B3A SINE B2 2 77 -121 8 1556 804 226 81 10 chr6 127387795 127387992 -22129045 + B3 SINE B2 3 213 -3 8 1556 2953 251 64 63 chr6 127388965 127390138 -22126899 - RMER1C Other Other -9 1333 54 8 1556 252 270 40 0 chr6 127390897 127390971 -22126066 + ORR1E LTR MaLR 4 80 -279 8 1556 773 49 10 0 chr6 127391227 127391329 -22125708 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 8 1556 215 167 0 53 chr6 127391330 127391387 -22125650 + T-rich Low_complexity Low_complexity 2 55 0 8 1556 254 283 17 0 chr6 127391474 127391534 -22125503 - B3A SINE B2 -123 75 15 8 1556 643 226 86 67 chr6 127391773 127391982 -22125055 + B3 SINE B2 1 213 -3 8 1556 760 219 47 33 chr6 127392153 127392365 -22124672 + ID_B1 SINE B4 1 215 -9 8 1556 279 0 0 0 chr6 127392399 127392430 -22124607 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 8 1556 291 204 70 23 chr6 127392487 127392658 -22124379 + (CTAA)n Simple_repeat Simple_repeat 2 180 0 8 1556 207 0 0 0 chr6 127393122 127393145 -22123892 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1556 590 208 45 15 chr6 127393736 127393868 -22123169 + RSINE1 SINE B4 30 165 0 8 1556 448 399 59 0 chr6 127394187 127394425 -22122612 + L3 LINE CR1 2939 3190 -1299 8 1556 253 341 152 7 chr6 127394507 127394796 -22122241 + L3 LINE CR1 3173 3503 -986 8 1556 869 235 88 36 chr6 127395275 127395549 -22121488 + B4A SINE B4 5 292 0 8 1556 312 175 0 0 chr6 127395593 127395656 -22121381 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1556 194 315 55 9 chr6 127395705 127395814 -22121223 + L3 LINE CR1 3806 3919 -570 8 1556 180 111 0 0 chr6 127396473 127396500 -22120537 + (TCC)n Simple_repeat Simple_repeat 3 29 0 8 1556 203 255 0 0 chr6 127398022 127398069 -22118968 + GA-rich Low_complexity Low_complexity 2 48 0 8 1556 673 12 23 0 chr6 127398840 127398926 -22118111 + (TC)n Simple_repeat Simple_repeat 2 89 0 8 1556 183 331 49 41 chr6 127399134 127399214 -22117823 + L2a LINE L2 3303 3378 -48 8 1556 459 0 0 0 chr6 127399214 127399265 -22117772 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1556 183 331 49 41 chr6 127399265 127399307 -22117730 + L2a LINE L2 3379 3425 -1 8 1556 252 86 0 0 chr6 127399603 127399638 -22117399 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1557 232 231 31 0 chr6 127402103 127402168 -22114869 + L1MC LINE L1 4284 4350 -1796 8 1557 280 250 0 15 chr6 127402279 127402344 -22114693 + tRNA-Ala-GCY_ tRNA tRNA 2 65 -10 8 1557 258 136 0 0 chr6 127404358 127404402 -22112635 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 8 1557 809 192 147 0 chr6 127405574 127405751 -22111286 - B3 SINE B2 -13 203 1 8 1557 2039 141 55 95 chr6 127406016 127406416 -22110621 - ORR1C2 LTR MaLR 0 384 1 8 1557 5330 223 43 33 chr6 127406416 127407772 -22109265 - ORR1C2-int LTR MaLR 0 1370 1 8 1557 1784 142 32 151 chr6 127407772 127408203 -22108834 - ORR1C2 LTR MaLR 0 384 5 8 1557 852 199 295 9 chr6 127409591 127409910 -22107127 + MTD LTR MaLR 10 419 0 8 1557 871 156 183 0 chr6 127410576 127410756 -22106281 + URR1A DNA MER1_type 1 213 -13 8 1557 1706 11 11 0 chr6 127411319 127411509 -22105528 + B2_Mm1a SINE B2 2 193 0 8 1557 379 263 40 0 chr6 127411905 127412004 -22105033 - PB1D7 SINE Alu -5 115 13 8 1557 325 346 67 14 chr6 127412114 127412322 -22104715 - Charlie25 DNA MER1_type -225 2299 2081 8 1557 623 257 126 16 chr6 127412477 127412667 -22104370 + ID_B1 SINE B4 1 211 -13 8 1557 406 283 30 10 chr6 127413184 127413284 -22103753 - PB1D10 SINE Alu -13 104 3 8 1557 374 250 33 0 chr6 127414205 127414297 -22102740 - B1F SINE Alu -13 136 42 8 1557 247 271 0 0 chr6 127414314 127414384 -22102653 - L1M4b LINE L1 -5719 1615 1546 8 1557 533 227 0 9 chr6 127414477 127414588 -22102449 - PB1D10 SINE Alu -4 113 4 8 1557 419 240 0 55 chr6 127414496 127414606 -22102431 - ID_B1 SINE B4 -48 176 73 8 1557 369 0 0 0 chr6 127414933 127414974 -22102063 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1557 555 278 44 19 chr6 127415096 127415254 -22101783 + RSINE1 SINE B4 2 163 -2 8 1557 386 331 79 23 chr6 127415648 127415991 -22101046 - L1M4b LINE L1 -6539 795 434 8 1557 270 106 0 0 chr6 127416335 127416382 -22100655 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 8 1557 588 226 0 0 chr6 127416386 127416492 -22100545 + RSINE1 SINE B4 47 152 -13 8 1557 292 214 108 43 chr6 127417598 127417618 -22099419 - PB1 SINE Alu -8 119 104 9 1557 847 0 0 19 chr6 127417618 127417723 -22099314 + (TCCC)n Simple_repeat Simple_repeat 2 104 0 9 1557 292 214 108 43 chr6 127417723 127417795 -22099242 - PB1 SINE Alu -24 103 22 9 1557 317 182 10 146 chr6 127418428 127418634 -22098403 + (CACAG)n Simple_repeat Simple_repeat 3 180 0 9 1557 319 186 10 149 chr6 127418660 127418918 -22098119 + (CACAG)n Simple_repeat Simple_repeat 1 222 0 9 1557 224 89 81 81 chr6 127418863 127419035 -22098002 + (CAG)n Simple_repeat Simple_repeat 2 173 0 9 1557 661 230 7 0 chr6 127419458 127419597 -22097440 - B1_Mur2 SINE Alu -7 142 3 9 1557 300 207 121 12 chr6 127419666 127419749 -22097288 - 5S rRNA rRNA -27 94 3 9 1557 195 326 125 7 chr6 127421071 127421207 -22095830 - MIRb SINE MIR -18 250 99 9 1557 246 116 0 0 chr6 127421944 127421987 -22095050 + (TTTTTG)n Simple_repeat Simple_repeat 5 47 0 9 1557 364 272 26 9 chr6 127421987 127422102 -22094935 - PB1D10 SINE Alu 0 117 1 9 1557 898 209 68 0 chr6 127423112 127423318 -22093719 + ID_B1 SINE B4 5 224 0 9 1557 262 115 0 37 chr6 127423755 127423809 -22093228 + CT-rich Low_complexity Low_complexity 2 53 0 9 1557 244 348 99 48 chr6 127425833 127426207 -22090830 + L1MC LINE L1 5388 5780 -2102 9 1557 180 0 0 0 chr6 127426561 127426581 -22090456 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1557 863 105 8 0 chr6 127426677 127426810 -22090227 + B1_Mur3 SINE Alu 15 148 -1 9 1557 434 226 22 22 chr6 127426992 127427128 -22089909 + B3A SINE B2 63 198 0 9 1557 789 205 135 16 chr6 127428344 127428537 -22088500 - B3 SINE B2 0 216 1 9 1557 370 250 111 22 chr6 127429216 127429351 -22087686 + B1F1 SINE Alu 1 147 -2 9 1557 1105 261 49 50 chr6 127429500 127429883 -22087154 - MTE2a LTR MaLR -5 374 5 9 1557 939 211 19 19 chr6 127430208 127430421 -22086616 - B3 SINE B2 0 216 4 9 1557 638 174 313 12 chr6 127430456 127430619 -22086418 - B3 SINE B2 -4 212 1 9 1557 474 18 0 0 chr6 127431582 127431637 -22085400 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 9 1557 564 231 90 57 chr6 127431718 127431929 -22085108 + MER20 DNA MER1_type 2 219 0 9 1557 243 0 0 0 chr6 127432314 127432341 -22084696 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1557 459 0 0 0 chr6 127432341 127432391 -22084646 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 1557 519 17 0 0 chr6 127433877 127433937 -22083100 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 1557 572 211 102 2 chr6 127433937 127434102 -22082935 - B3A SINE B2 -37 179 1 9 1557 16449 77 33 41 chr6 127434417 127434590 -22082447 - L1_Mur1 LINE L1 -2223 3663 3492 9 1557 189 0 0 0 chr6 127434590 127434611 -22082426 + (TTG)n Simple_repeat Simple_repeat 3 23 0 9 1557 16449 77 33 41 chr6 127434611 127435355 -22081682 - L1_Mur1 LINE L1 -2395 3491 2811 9 1557 1209 48 0 20 chr6 127435355 127435504 -22081533 - B1_Mm SINE Alu 0 147 2 9 1557 16449 92 55 42 chr6 127435504 127437647 -22079390 - L1_Mur1 LINE L1 -3076 2810 223 9 1557 667 214 0 0 chr6 127438860 127438986 -22078051 - B1_Mur1 SINE Alu 0 149 24 9 1557 853 50 8 8 chr6 127439331 127439451 -22077586 + (TCCC)n Simple_repeat Simple_repeat 1 120 0 9 1557 215 381 24 63 chr6 127439610 127439736 -22077301 - B1F SINE Alu -28 121 1 9 1557 207 125 0 0 chr6 127443428 127443468 -22073569 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 9 1557 469 83 14 0 chr6 127443468 127443540 -22073497 - B1_Mus2 SINE Alu -1 146 74 9 1557 223 306 13 40 chr6 127444871 127444884 -22072153 - B1F SINE Alu 0 149 139 9 1557 542 41 0 14 chr6 127444884 127444958 -22072079 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 9 1557 223 306 13 40 chr6 127444958 127445019 -22072018 - B1F SINE Alu -11 138 77 9 1557 21 0 0 0 chr6 127445073 127445094 -22071943 + AT_rich Low_complexity Low_complexity 1 21 0 9 1557 577 273 0 85 chr6 127445105 127445317 -22071720 + B3A SINE B2 5 198 0 9 1557 909 217 0 12 chr6 127445329 127445416 -22071621 + B4A SINE B4 1 85 -207 9 1557 335 263 94 10 chr6 127445416 127445512 -22071525 + PB1D7 SINE Alu 1 104 -16 9 1557 446 279 138 96 chr6 127445504 127445629 -22071408 - RMER10A LTR ERVL -25 417 300 9 1557 805 38 94 6 chr6 127445629 127445789 -22071248 + (CAGAG)n Simple_repeat Simple_repeat 2 175 0 9 1557 446 279 138 96 chr6 127445789 127446047 -22070990 - RMER10A LTR ERVL -143 299 18 9 1557 539 265 37 96 chr6 127446137 127446325 -22070712 + B4A SINE B4 116 292 0 9 1557 459 149 0 0 chr6 127446525 127446632 -22070405 + (GA)n Simple_repeat Simple_repeat 1 107 0 9 1557 466 239 72 36 chr6 127446632 127446771 -22070266 - B3A SINE B2 -3 195 52 9 1557 224 304 29 0 chr6 127447551 127447620 -22069417 + MIRm SINE MIR 40 110 -166 9 1557 440 241 44 9 chr6 127447777 127447890 -22069147 + RCHARR1 DNA MER1_type 468 584 -390 9 1557 390 225 169 78 chr6 127448125 127448279 -22068758 - B3A SINE B2 -30 168 1 9 1557 2783 256 57 103 chr6 127448283 127448494 -22068543 - RCHARR1 DNA MER1_type -1 973 765 9 1557 240 111 0 0 chr6 127448494 127448530 -22068507 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 9 1557 2783 256 57 103 chr6 127448530 127448959 -22068078 - RCHARR1 DNA MER1_type -210 764 347 9 1557 722 199 128 22 chr6 127448959 127449139 -22067898 + B3 SINE B2 1 199 -17 9 1557 2783 256 57 103 chr6 127449139 127449515 -22067522 - RCHARR1 DNA MER1_type -628 346 5 9 1557 2221 154 53 82 chr6 127449648 127450100 -22066937 + RMER6B LTR ERVK 23 461 0 9 1557 257 308 85 9 chr6 127450258 127450423 -22066614 + MIR SINE MIR 4 182 -86 9 1557 400 261 135 43 chr6 127450904 127451112 -22065925 - MER90 LTR ERV1 -347 228 2 9 1557 1521 208 121 14 chr6 127451482 127451595 -22065442 - MTD LTR MaLR -14 405 290 9 1557 477 50 0 0 chr6 127451595 127451655 -22065382 + (CAGG)n Simple_repeat Simple_repeat 1 60 0 9 1557 1521 208 121 14 chr6 127451655 127451906 -22065131 - MTD LTR MaLR -130 289 4 9 1557 624 14 0 0 chr6 127452068 127452141 -22064896 + (TG)n Simple_repeat Simple_repeat 1 73 0 9 1557 522 0 0 0 chr6 127452141 127452198 -22064839 + (GA)n Simple_repeat Simple_repeat 1 58 0 9 1557 576 247 123 0 chr6 127452205 127452359 -22064678 - B3A SINE B2 -24 174 2 9 1557 1010 163 163 0 chr6 127452497 127452687 -22064350 + URR1A DNA MER1_type 1 221 -5 9 1557 528 209 64 6 chr6 127455367 127455500 -22061537 + B1F SINE Alu 5 140 -10 9 1557 1284 89 0 0 chr6 127456616 127456796 -22060241 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1557 180 111 0 0 chr6 127456805 127456832 -22060205 + (CGTG)n Simple_repeat Simple_repeat 1 27 0 9 1557 657 269 89 6 chr6 127456836 127457004 -22060033 - B3A SINE B2 -16 182 1 9 1557 2074 167 26 138 chr6 127457213 127457714 -22059323 - RLTR41 LTR ERV1 0 446 2 9 1557 293 331 24 16 chr6 127457811 127457934 -22059103 - L3 LINE CR1 -763 3726 3603 9 1557 504 284 257 4 chr6 127458222 127458448 -22058589 - MLT1A0 LTR MaLR -79 286 4 9 1557 603 74 0 0 chr6 127459103 127459184 -22057853 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 9 1557 366 23 0 0 chr6 127459184 127459226 -22057811 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 9 1557 806 192 0 0 chr6 127459231 127459361 -22057676 - B1_Mus2 SINE Alu -16 131 2 9 1557 1877 141 43 81 chr6 127459389 127459860 -22057177 + RMER17C LTR ERVK 16 439 -519 9 1557 365 274 203 11 chr6 127459975 127460152 -22056885 + MLT1A1 LTR MaLR 3 213 -195 9 1557 250 313 24 12 chr6 127460186 127460270 -22056767 + MLT1A1 LTR MaLR 319 403 -5 9 1557 898 271 76 79 chr6 127460393 127460774 -22056263 - MER74B LTR ERVL -200 422 43 9 1557 6161 134 43 8 chr6 127460774 127461864 -22055173 - Lx5 LINE L1 -375 6675 5531 9 1557 371 140 194 29 chr6 127461914 127462017 -22055020 + RLTR15 LTR ERVK 2 121 -238 9 1557 1116 221 16 8 chr6 127462342 127462588 -22054449 - RLTR14 LTR ERV1 -134 248 1 9 1557 716 327 69 17 chr6 127462658 127462862 -22054175 - MER44C DNA MER2_type -4 729 518 9 1557 2550 210 11 77 chr6 127462862 127463516 -22053521 - RMER19C LTR ERVK 0 611 1 9 1557 716 293 155 19 chr6 127463516 127463705 -22053332 - MER44C DNA MER2_type -216 517 291 9 1557 570 261 9 0 chr6 127463707 127463822 -22053215 + ID_B1 SINE B4 90 205 -19 9 1557 423 0 0 0 chr6 127463827 127463874 -22053163 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1557 301 223 0 21 chr6 127463902 127463998 -22053039 + (CA)n Simple_repeat Simple_repeat 2 95 0 9 1557 2897 6 3 0 chr6 127464046 127464367 -22052670 + RLTRETN_Mm LTR ERVK 1 322 0 9 1557 28069 77 14 14 chr6 127464367 127470666 -22046371 + MMETn-int LTR ERVK 1 7299 -107 9 1557 2897 6 3 0 chr6 127470666 127470987 -22046050 + RLTRETN_Mm LTR ERVK 1 322 0 9 1557 348 322 115 93 chr6 127471019 127471245 -22045792 - MER44C DNA MER2_type -495 238 10 9 1557 192 330 66 0 chr6 127471260 127471351 -22045686 + L3b LINE CR1 240 336 -146 9 1557 274 141 192 27 chr6 127472120 127472193 -22044844 + B3A SINE B2 1 85 -113 9 1557 410 36 18 0 chr6 127472223 127472279 -22044758 + (CA)n Simple_repeat Simple_repeat 1 57 0 9 1557 1150 76 91 23 chr6 127473137 127473313 -22043724 - B2_Mm2 SINE B2 -4 191 4 9 1557 387 58 0 0 chr6 127473512 127473523 -22043514 + (A)n Simple_repeat Simple_repeat 1 11 0 9 1557 1281 161 23 14 chr6 127473523 127473737 -22043300 + B3 SINE B2 1 216 0 9 1557 387 58 0 0 chr6 127473737 127473777 -22043260 + (A)n Simple_repeat Simple_repeat 1 40 0 9 1557 222 321 179 0 chr6 127474186 127474298 -22042739 + MIR SINE MIR 9 140 -122 9 1557 274 128 0 0 chr6 127475117 127475156 -22041881 + U2 snRNA snRNA 1 39 -149 9 1557 202 118 29 0 chr6 127475330 127475364 -22041673 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1557 1069 276 14 14 chr6 127475394 127475670 -22041367 - B4A SINE B4 -16 276 1 9 1557 4104 221 73 97 chr6 127475747 127476980 -22040057 + Lx5 LINE L1 5812 7014 -36 9 1557 1309 53 20 7 chr6 127477121 127477423 -22039614 + (TAGA)n Simple_repeat Simple_repeat 1 305 0 9 1557 387 247 43 0 chr6 127477468 127477561 -22039476 - B1F SINE Alu -48 101 5 9 1557 221 315 82 0 chr6 127477946 127478019 -22039018 + ID4_ SINE ID 1 79 -4 9 1557 299 277 227 0 chr6 127478254 127478373 -22038664 - MIR SINE MIR -114 148 3 9 1557 4535 155 77 57 chr6 127478499 127479383 -22037654 + RMER19B LTR ERVK 1 902 0 9 1557 543 287 129 51 chr6 127479689 127479983 -22037054 - LTR50 LTR ERVL -478 317 1 9 1557 522 0 0 0 chr6 127480034 127480092 -22036945 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1557 198 0 0 0 chr6 127480291 127480313 -22036724 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1557 1130 106 0 11 chr6 127480604 127480786 -22036251 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1557 932 141 0 22 chr6 127480787 127480894 -22036143 + polypyrimidine Low_complexity Low_complexity 76 179 0 1 1557 1143 112 0 0 chr6 127480894 127481073 -22035964 + (TCC)n Simple_repeat Simple_repeat 2 180 0 1 1557 932 141 0 22 chr6 127481073 127481147 -22035890 + polypyrimidine Low_complexity Low_complexity 2 75 0 1 1557 690 75 0 0 chr6 127481689 127481795 -22035242 + (TG)n Simple_repeat Simple_repeat 2 107 0 1 1557 228 239 69 14 chr6 127481845 127481917 -22035120 + MIR SINE MIR 1 76 -186 1 1557 2260 104 3 0 chr6 127482536 127482844 -22034193 + ORR1A2 LTR MaLR 19 327 0 1 1557 285 303 66 22 chr6 127482862 127483044 -22033993 + L1MEf LINE L1 132 321 -6079 1 1557 239 287 49 8 chr6 127483383 127483506 -22033531 + L1MEf LINE L1 757 884 -5516 1 1557 290 262 0 0 chr6 127484438 127484518 -22032519 + L1M3 LINE L1 4480 4559 -1581 1 1557 1779 271 138 24 chr6 127484522 127485434 -22031603 + L1MB1 LINE L1 4310 5325 -815 1 1557 1046 216 24 24 chr6 127485436 127485649 -22031388 + B3 SINE B2 2 214 -2 1 1557 341 196 365 0 chr6 127485677 127485784 -22031253 - B1F1 SINE Alu -2 147 2 1 1557 263 28 0 27 chr6 127485808 127485845 -22031192 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1557 863 297 102 32 chr6 127485870 127486312 -22030725 + L1MB1 LINE L1 5360 5832 -336 1 1557 601 284 66 56 chr6 127486339 127486357 -22030680 + B4 SINE B4 93 104 -188 1 1557 351 0 0 0 chr6 127486357 127486396 -22030641 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1557 858 216 67 11 chr6 127486396 127486575 -22030462 + B4A SINE B4 105 292 0 1 1557 864 187 0 0 chr6 127486576 127486962 -22030075 + (CA)n Simple_repeat Simple_repeat 1 386 0 1 1557 645 258 63 70 chr6 127486972 127487272 -22029765 + L1MB1 LINE L1 5831 6128 -40 1 1557 317 244 59 35 chr6 127487292 127487377 -22029660 + PB1D7 SINE Alu 34 120 0 1 1557 441 281 105 21 chr6 127487441 127487830 -22029207 + L1MEf LINE L1 1689 2110 -4290 1 1557 759 325 82 38 chr6 127487969 127488966 -22028071 + L1MEf LINE L1 2352 3392 -2927 1 1557 1242 48 0 0 chr6 127489086 127489232 -22027805 + B1_Mus1 SINE Alu 3 148 0 1 1557 186 128 0 0 chr6 127489233 127489272 -22027765 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1557 917 224 172 4 chr6 127489298 127489531 -22027506 + MTD LTR MaLR 6 277 -142 1 1557 243 196 0 21 chr6 127489529 127489576 -22027461 - MTD LTR MaLR -264 155 110 1 1557 1836 183 42 59 chr6 127489576 127489931 -22027106 - ORR1B2 LTR MaLR 0 367 19 1 1557 443 176 44 0 chr6 127489948 127490039 -22026998 - MTD LTR MaLR -318 101 7 1 1557 367 312 65 0 chr6 127490049 127490203 -22026834 + L1M4 LINE L1 3621 3784 -2362 1 1557 375 299 37 61 chr6 127490214 127490378 -22026659 + B4 SINE B4 2 161 -131 1 1557 393 294 131 24 chr6 127490506 127490841 -22026196 + L1ME2z LINE L1 5793 6163 -281 1 1557 341 221 132 14 chr6 127490958 127491053 -22025984 + B1F SINE Alu 1 115 -12 1 1557 273 57 0 0 chr6 127491053 127491088 -22025949 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1557 224 271 168 101 chr6 127491088 127491111 -22025926 + PB1 SINE Alu 116 127 0 1 1557 501 65 0 0 chr6 127491309 127491371 -22025666 - B2_Mm2 SINE B2 -129 66 5 1 1557 457 207 8 16 chr6 127492309 127492432 -22024605 + CT-rich Low_complexity Low_complexity 4 125 0 1 1557 311 131 119 0 chr6 127493672 127493756 -22023281 - Lx9 LINE L1 -1 7643 7550 1 1557 2181 238 38 8 chr6 127493783 127494283 -22022754 - Lx9 LINE L1 -167 7477 6963 1 1557 266 343 22 36 chr6 127494344 127494483 -22022554 - L1_Rod LINE L1 -6929 243 107 1 1557 1301 154 109 8 chr6 127495903 127496151 -22020886 - MTD LTR MaLR -146 273 1 1 1557 429 95 0 0 chr6 127496519 127496582 -22020455 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1557 366 329 130 42 chr6 127497161 127497691 -22019346 - L1MB8 LINE L1 -9 6169 5593 1 1557 1152 92 13 9 chr6 127497707 127497940 -22019097 + (GGA)n Simple_repeat Simple_repeat 1 234 0 1 1557 1187 313 86 28 chr6 127498099 127498862 -22018175 - L1MB8 LINE L1 -740 5439 4629 1 1557 547 291 7 0 chr6 127498939 127499080 -22017957 - ID_B1 SINE B4 -1 223 82 1 1557 1670 250 111 21 chr6 127499107 127499713 -22017324 - L1MC LINE L1 -3033 3113 2454 1 1557 292 222 0 0 chr6 127500026 127500098 -22016939 - L1M4b LINE L1 -4281 2912 2841 1 1557 1088 174 100 0 chr6 127500381 127500571 -22016466 + B3 SINE B2 4 212 -4 2 1557 1668 228 92 5 chr6 127500590 127500970 -22016067 - MTD LTR MaLR -1 418 6 3 1557 983 260 65 9 chr6 127500973 127501295 -22015742 + Lx9 LINE L1 5687 6026 -1618 4 1557 333 349 81 4 chr6 127501452 127501711 -22015326 - L1M4b LINE L1 -5708 1626 1348 1 1557 458 168 42 50 chr6 127501711 127501830 -22015207 + RMER15 LTR ERVL 303 420 -155 5 1557 236 162 0 0 chr6 127501820 127501857 -22015180 - tRNA-Gln-CAG tRNA tRNA -37 38 2 6 1557 502 276 26 58 chr6 127501918 127502072 -22014965 + RMER15 LTR ERVL 427 575 0 5 1557 594 256 86 14 chr6 127502965 127503104 -22013933 + B3A SINE B2 2 150 -48 7 1557 396 0 0 0 chr6 127503107 127503151 -22013886 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1557 871 232 5 31 chr6 127504304 127504500 -22012537 - B3A SINE B2 -5 193 3 9 1557 273 29 0 0 chr6 127504751 127504785 -22012252 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1557 488 341 75 42 chr6 127504901 127505271 -22011766 - ORR1E LTR MaLR -2 368 1 1 1557 263 284 42 10 chr6 127506470 127506566 -22010471 + MLT1A1 LTR MaLR 310 408 0 1 1557 464 346 11 6 chr6 127507632 127507809 -22009228 - MER45A DNA Tip100 0 178 1 1 1557 184 245 148 19 chr6 127507939 127507993 -22009044 + MIR SINE MIR 77 137 -125 1 1557 971 285 102 36 chr6 127509271 127509769 -22007268 - Lx9 LINE L1 -22 7622 7092 1 1557 237 261 15 30 chr6 127510036 127510103 -22006934 + MIRm SINE MIR 93 158 -118 1 1557 211 274 74 82 chr6 127511643 127511778 -22005259 - MIRm SINE MIR -77 199 66 1 1557 243 0 0 0 chr6 127511851 127511878 -22005159 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1557 428 51 17 0 chr6 127512012 127512071 -22004966 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1557 25 31 0 0 chr6 127512553 127512585 -22004452 + AT_rich Low_complexity Low_complexity 1 32 0 2 1557 384 260 65 21 chr6 127513112 127513259 -22003778 - MIRb SINE MIR -74 194 40 2 1557 493 293 28 28 chr6 127513304 127513448 -22003589 + RSINE1 SINE B4 3 146 -19 2 1557 436 156 22 0 chr6 127513455 127513545 -22003492 + GA-rich Low_complexity Low_complexity 1 92 0 2 1557 184 279 43 14 chr6 127514082 127514151 -22002886 - MIR3 SINE MIR -129 79 9 2 1557 196 77 51 0 chr6 127514281 127514320 -22002717 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1557 305 149 58 29 chr6 127514362 127514535 -22002502 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1557 335 190 21 65 chr6 127514522 127514708 -22002329 + (CATA)n Simple_repeat Simple_repeat 1 178 0 2 1557 672 126 6 32 chr6 127514725 127514881 -22002156 + (CATA)n Simple_repeat Simple_repeat 4 155 0 2 1557 251 196 20 0 chr6 127515271 127515322 -22001715 - MER94 DNA AcHobo -1 133 82 2 1557 242 271 17 0 chr6 127515994 127516053 -22000984 - MIR SINE MIR -188 74 15 2 1557 423 0 0 0 chr6 127516342 127516389 -22000648 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1557 1431 254 45 42 chr6 127516884 127517241 -21999796 - MTEa LTR MaLR -21 358 1 3 1557 554 281 21 14 chr6 127517412 127517553 -21999484 + B1F SINE Alu 7 148 -1 3 1557 314 214 27 54 chr6 127517559 127517633 -21999404 + ID4 SINE ID 1 72 -11 3 1557 249 33 0 0 chr6 127517633 127517663 -21999374 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1557 610 258 12 61 chr6 127518331 127518496 -21998541 - MIR SINE MIR -89 173 17 3 1557 210 345 17 25 chr6 127519372 127519491 -21997546 + L3 LINE CR1 4344 4461 -28 3 1557 235 204 0 0 chr6 127519689 127519733 -21997304 + PB1D10 SINE Alu 52 95 -22 3 1557 215 313 15 0 chr6 127519735 127519802 -21997235 + G-rich Low_complexity Low_complexity 3 70 0 3 1557 183 80 0 0 chr6 127520026 127520051 -21996986 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 3 1557 181 255 21 0 chr6 127520915 127520962 -21996075 - MIRc SINE MIR -118 150 103 3 1557 322 247 10 82 chr6 127521823 127521920 -21995117 - B1_Mm SINE Alu -51 96 7 4 1557 302 261 74 50 chr6 127522488 127522540 -21994497 - MIR SINE MIR -129 133 86 3 1557 826 282 82 84 chr6 127522540 127522920 -21994117 - MTE2b LTR MaLR 0 379 1 4 1557 302 261 74 50 chr6 127522920 127522988 -21994049 - MIR SINE MIR -177 85 10 3 1557 194 250 0 67 chr6 127523130 127523190 -21993847 + MIRc SINE MIR 194 249 -19 4 1557 256 272 77 10 chr6 127523198 127523302 -21993735 - MIRc SINE MIR -111 157 47 4 1557 262 318 99 20 chr6 127523880 127524031 -21993006 - MIRb SINE MIR -32 230 68 4 1557 600 272 49 44 chr6 127524378 127524582 -21992455 + B4A SINE B4 20 224 -68 4 1557 284 102 0 20 chr6 127524583 127524633 -21992404 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1557 596 270 16 153 chr6 127524638 127524887 -21992150 - MTD LTR MaLR -190 229 2 4 1557 1222 68 0 0 chr6 127524887 127525034 -21992003 + B1_Mus1 SINE Alu 1 147 -1 4 1557 199 85 35 58 chr6 127525035 127525122 -21991915 + A-rich Low_complexity Low_complexity 1 85 0 4 1557 402 341 57 0 chr6 127525136 127525259 -21991778 + B3A SINE B2 2 131 -67 5 1557 369 0 0 0 chr6 127525270 127525311 -21991726 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1557 775 257 0 33 chr6 127525345 127525526 -21991511 - ORR1E LTR MaLR -184 175 1 5 1557 331 266 9 35 chr6 127525531 127525644 -21991393 - L1MA6 LINE L1 -126 6174 6065 5 1557 597 234 80 29 chr6 127526205 127526443 -21990594 - L1MA9 LINE L1 -172 6140 5891 5 1557 389 370 0 0 chr6 127526547 127526701 -21990336 + (TG)n Simple_repeat Simple_repeat 1 154 0 5 1557 827 204 7 0 chr6 127526714 127526861 -21990176 - B4A SINE B4 -1 291 144 5 1557 353 283 66 16 chr6 127526878 127527000 -21990037 - L1M5 LINE L1 -342 5782 5655 5 1557 21 0 0 0 chr6 127527655 127527676 -21989361 + AT_rich Low_complexity Low_complexity 1 21 0 5 1557 270 225 0 0 chr6 127528217 127528297 -21988740 + CT-rich Low_complexity Low_complexity 1 80 0 5 1557 249 33 0 0 chr6 127528298 127528328 -21988709 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1557 858 294 104 71 chr6 127528992 127529256 -21987781 - MLT1C LTR MaLR -8 459 208 6 1557 372 22 0 0 chr6 127529256 127529301 -21987736 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1557 858 294 104 71 chr6 127529301 127529431 -21987606 - MLT1C LTR MaLR -260 207 52 6 1557 229 209 90 0 chr6 127530061 127530128 -21986909 - L1MC4a LINE L1 -1839 6043 5971 6 1557 512 258 54 15 chr6 127530142 127530272 -21986765 - RSINE1 SINE B4 -8 157 23 6 1557 334 253 40 0 chr6 127530266 127530341 -21986696 - PB1D10 SINE Alu -31 86 9 6 1557 330 246 0 0 chr6 127530424 127530489 -21986548 - ID_B1 SINE B4 -10 214 150 6 1557 369 185 0 15 chr6 127530506 127530572 -21986465 - ID SINE ID -154 70 6 6 1557 364 287 239 38 chr6 127531203 127531497 -21985540 - ORR1E LTR MaLR -5 374 22 6 1558 694 264 151 48 chr6 127533410 127533661 -21983376 + B4 SINE B4 6 282 -10 6 1558 339 25 0 0 chr6 127533694 127533734 -21983303 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1558 727 181 9 0 chr6 127534004 127534120 -21982917 - B1_Mus2 SINE Alu -19 128 12 7 1558 830 184 166 11 chr6 127534500 127534687 -21982350 + B3 SINE B2 1 216 0 7 1558 216 216 0 0 chr6 127535933 127535984 -21981053 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1558 391 285 151 2 chr6 127536047 127536354 -21980683 - L1MA4 LINE L1 -280 6020 5669 7 1558 210 195 0 68 chr6 127536767 127536811 -21980226 - L3b LINE CR1 -16 466 426 7 1558 3099 243 78 55 chr6 127537242 127537715 -21979322 - RCHARR1 DNA MER1_type -8 966 495 7 1558 456 67 0 0 chr6 127537715 127537775 -21979262 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1558 648 301 7 0 chr6 127537776 127537929 -21979108 - RSINE1 SINE B4 -11 154 1 7 1558 3099 243 78 55 chr6 127537929 127538363 -21978674 - RCHARR1 DNA MER1_type -480 494 36 7 1558 239 274 164 36 chr6 127538472 127538612 -21978425 + MIRb SINE MIR 71 228 -40 7 1558 4483 12 2 0 chr6 127538623 127539115 -21977922 + MT2_Mm LTR ERVL 1 493 0 7 1558 269 281 37 0 chr6 127539137 127539219 -21977818 - RSINE1 SINE B4 -69 96 12 8 1558 200 194 0 0 chr6 127539799 127539835 -21977202 + CT-rich Low_complexity Low_complexity 2 37 0 8 1558 384 77 0 0 chr6 127540676 127540728 -21976309 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 8 1558 731 231 51 49 chr6 127541106 127541286 -21975751 + B3 SINE B2 50 216 0 8 1558 224 371 20 20 chr6 127541290 127541389 -21975648 - MIRb SINE MIR 0 268 170 8 1558 1158 282 7 18 chr6 127542296 127542581 -21974456 + B4A SINE B4 1 282 -10 8 1558 285 276 19 58 chr6 127543239 127543343 -21973694 - MTEa LTR MaLR -2 377 278 8 1558 752 132 8 0 chr6 127543430 127543559 -21973478 + (GA)n Simple_repeat Simple_repeat 1 130 0 8 1558 208 317 57 37 chr6 127543784 127543887 -21973150 + MIRm SINE MIR 3 108 -168 8 1558 1591 133 0 0 chr6 127544093 127544319 -21972718 - URR1A DNA MER1_type 0 226 1 8 1558 371 307 44 0 chr6 127544383 127544497 -21972540 + ORR1E LTR MaLR 20 138 -221 9 1558 360 0 0 0 chr6 127544720 127544760 -21972277 + (CAGGG)n Simple_repeat Simple_repeat 5 44 0 9 1558 275 324 68 132 chr6 127545453 127545626 -21971411 - ORR1E LTR MaLR 0 359 183 9 1558 1318 85 15 60 chr6 127545626 127545827 -21971210 + B2_Mm2 SINE B2 1 192 -3 9 1558 275 324 68 132 chr6 127545827 127546033 -21971004 - ORR1E LTR MaLR -177 182 5 9 1558 249 318 116 18 chr6 127546833 127546945 -21970092 - MER2 DNA MER2_type -221 124 2 9 1558 569 320 113 43 chr6 127547095 127547421 -21969616 + MLT1A LTR MaLR 4 352 -22 9 1558 342 0 0 0 chr6 127547476 127547514 -21969523 + (GA)n Simple_repeat Simple_repeat 1 38 0 9 1558 261 273 122 43 chr6 127547839 127547954 -21969083 - MLT1A1 LTR MaLR -16 392 269 9 1558 1350 62 0 0 chr6 127548017 127548194 -21968843 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 9 1558 756 260 6 0 chr6 127548391 127548568 -21968469 + B3A SINE B2 3 180 -18 9 1558 636 14 0 0 chr6 127548702 127548775 -21968262 + (GA)n Simple_repeat Simple_repeat 2 74 0 1 1558 337 311 48 0 chr6 127549006 127549109 -21967928 + RSINE1 SINE B4 41 148 -17 1 1558 453 81 0 0 chr6 127549128 127549190 -21967847 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 1 1558 328 276 51 22 chr6 127549779 127549916 -21967121 + L3b LINE CR1 115 255 -227 1 1558 230 196 0 42 chr6 127550158 127550254 -21966783 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 1558 928 199 194 28 chr6 127550256 127550509 -21966528 + ORR1D2 LTR MaLR 72 366 -4 1 1558 477 115 0 0 chr6 127550521 127550599 -21966438 + (CATA)n Simple_repeat Simple_repeat 3 80 0 1 1558 303 336 169 15 chr6 127550815 127550945 -21966092 - MIRb SINE MIR -116 152 3 1 1558 428 0 19 0 chr6 127551003 127551055 -21965982 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1558 203 341 148 12 chr6 127551305 127551474 -21965563 + L3b LINE CR1 246 437 -45 1 1558 296 197 56 14 chr6 127551512 127551584 -21965453 + ID4 SINE ID 8 82 -1 1 1558 422 79 16 0 chr6 127551584 127551647 -21965390 + (GGGA)n Simple_repeat Simple_repeat 2 65 0 1 1558 180 0 0 0 chr6 127551675 127551695 -21965342 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1558 605 230 52 33 chr6 127551771 127551924 -21965113 - RSINE1 SINE B4 -8 157 2 1 1558 546 183 474 7 chr6 127552179 127552333 -21964704 + URR1A DNA MER1_type 1 226 0 1 1558 1050 217 15 10 chr6 127552467 127552667 -21964370 + B3 SINE B2 7 207 -9 1 1558 501 267 82 7 chr6 127552947 127553094 -21963943 + MER2 DNA MER2_type 70 227 -118 1 1558 384 291 12 0 chr6 127553095 127553181 -21963856 + PB1D10 SINE Alu 4 90 -27 1 1558 310 189 45 0 chr6 127553181 127553292 -21963745 + (TA)n Simple_repeat Simple_repeat 1 116 0 1 1558 225 0 0 0 chr6 127553292 127553317 -21963720 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1558 315 350 25 8 chr6 127553317 127553435 -21963602 + MER2 DNA MER2_type 226 345 0 1 1558 496 250 7 82 chr6 127554321 127554456 -21962581 + ID_B1 SINE B4 16 140 -84 1 1558 411 206 60 30 chr6 127554410 127554510 -21962527 + PB1D10 SINE Alu 15 117 0 1 1558 312 219 13 40 chr6 127554516 127554592 -21962445 + ID4 SINE ID 7 80 -3 1 1558 419 265 42 17 chr6 127554639 127554758 -21962279 - MER58B DNA MER1_type -181 160 39 1 1558 216 0 0 0 chr6 127554992 127555016 -21962021 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1558 227 237 57 85 chr6 127555073 127555179 -21961858 - MER54B LTR ERVL -626 167 65 1 1558 610 222 103 19 chr6 127556085 127556241 -21960796 - ORR1E LTR MaLR -190 169 1 1 1558 259 318 0 0 chr6 127556553 127556619 -21960418 - ID4 SINE ID -16 67 2 1 1558 492 217 19 9 chr6 127556631 127556738 -21960299 - PB1D10 SINE Alu -5 112 5 1 1558 185 310 14 14 chr6 127556758 127556830 -21960207 - MIR SINE MIR -18 244 173 1 1558 279 300 124 72 chr6 127556873 127557067 -21959970 + MIRc SINE MIR 26 229 -39 1 1558 491 119 0 23 chr6 127558106 127558192 -21958845 + (TCC)n Simple_repeat Simple_repeat 3 86 0 1 1558 251 270 66 57 chr6 127558192 127558230 -21958807 - BC1_Mm scRNA scRNA -37 115 77 1 1558 315 0 0 0 chr6 127558230 127558265 -21958772 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1 1558 294 254 90 0 chr6 127558265 127558332 -21958705 - tRNA-Ala-GCY_ tRNA tRNA 0 75 3 1 1558 1638 192 69 40 chr6 127558933 127559281 -21957756 - ORR1B2 LTR MaLR -9 358 1 1 1558 410 219 132 0 chr6 127560143 127560257 -21956780 - MTEb LTR MaLR 0 379 251 1 1558 191 188 0 20 chr6 127560350 127560399 -21956638 + GA-rich Low_complexity Low_complexity 4 51 0 1 1558 459 87 0 0 chr6 127561742 127561811 -21955226 + (TATG)n Simple_repeat Simple_repeat 4 72 0 1 1558 386 211 147 0 chr6 127561829 127561938 -21955099 - MIRb SINE MIR -110 158 34 1 1558 469 269 63 57 chr6 127562783 127562941 -21954096 + MIRb SINE MIR 23 181 -87 1 1558 258 32 0 0 chr6 127562984 127563015 -21954022 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1558 276 247 22 33 chr6 127563162 127563254 -21953783 + MIRc SINE MIR 87 177 -91 1 1558 269 286 103 28 chr6 127563734 127563856 -21953181 + MIRc SINE MIR 3 129 -133 1 1558 192 250 0 0 chr6 127564497 127564541 -21952496 - L2b LINE L2 -18 3357 3314 1 1558 215 161 112 3 chr6 127565278 127565336 -21951701 - MIR SINE MIR -121 87 28 1 1558 573 115 0 0 chr6 127565422 127565509 -21951528 + (TCCC)n Simple_repeat Simple_repeat 2 88 0 1 1558 530 255 90 150 chr6 127565581 127565776 -21951261 - ORR1E LTR MaLR -34 325 150 1 1558 378 0 0 0 chr6 127565776 127565818 -21951219 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1558 530 255 90 150 chr6 127565818 127565968 -21951069 - ORR1E LTR MaLR -210 149 1 1 1558 204 125 0 0 chr6 127567148 127567180 -21949857 + (CACG)n Simple_repeat Simple_repeat 2 33 0 1 1558 233 0 62 0 chr6 127567679 127567711 -21949326 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1558 470 271 65 19 chr6 127568267 127568421 -21948616 - RSINE1 SINE B4 0 165 5 1 1558 218 188 0 0 chr6 127569103 127569151 -21947886 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1558 285 118 0 0 chr6 127569151 127569202 -21947835 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1558 306 269 0 0 chr6 127569201 127569357 -21947680 + (CA)n Simple_repeat Simple_repeat 1 156 0 1 1558 204 242 0 0 chr6 127569444 127569539 -21947498 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 1558 528 16 0 0 chr6 127569566 127569627 -21947410 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1558 217 348 21 11 chr6 127569965 127570058 -21946979 - MIRc SINE MIR -115 153 60 1 1558 379 233 23 11 chr6 127570521 127570608 -21946429 + PB1D7 SINE Alu 32 119 -1 1 1558 217 354 15 30 chr6 127571088 127571155 -21945882 + ID4_ SINE ID 3 68 -15 1 1558 561 114 0 0 chr6 127571164 127571269 -21945768 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 1558 309 158 0 0 chr6 127571269 127571351 -21945686 + GA-rich Low_complexity Low_complexity 1 82 0 1 1558 245 347 153 35 chr6 127571732 127572019 -21945018 + L3 LINE CR1 3806 4126 -363 1 1558 354 318 11 61 chr6 127572229 127572410 -21944627 - B3A SINE B2 -3 195 24 1 1558 500 0 17 0 chr6 127572775 127572835 -21944202 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1558 213 206 138 31 chr6 127573342 127573407 -21943630 - MIRm SINE MIR -169 107 36 1 1558 180 0 0 0 chr6 127574778 127574798 -21942239 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1558 378 247 0 34 chr6 127574943 127575031 -21942006 + B4 SINE B4 3 87 -205 1 1558 389 135 0 26 chr6 127575031 127575107 -21941930 + GA-rich Low_complexity Low_complexity 4 77 0 1 1558 246 272 37 46 chr6 127576055 127576163 -21940874 + L2a LINE L2 3210 3316 -110 1 1558 242 288 0 0 chr6 127576292 127576351 -21940686 + GA-rich Low_complexity Low_complexity 4 62 0 1 1558 621 85 0 28 chr6 127576354 127576463 -21940574 + (TGGA)n Simple_repeat Simple_repeat 4 109 0 1 1558 208 130 43 0 chr6 127576505 127576551 -21940486 + GA-rich Low_complexity Low_complexity 1 48 0 1 1558 1337 41 0 12 chr6 127576552 127576725 -21940312 + (GAA)n Simple_repeat Simple_repeat 2 172 0 1 1558 275 261 33 22 chr6 127578996 127579086 -21937951 - MIRc SINE MIR -173 95 5 1 1558 483 216 68 48 chr6 127579999 127580145 -21936892 + B1F SINE Alu 1 149 0 1 1558 1454 258 49 16 chr6 127582342 127582709 -21934328 - MTD LTR MaLR 0 419 41 1 1558 191 125 0 24 chr6 127584433 127584474 -21932563 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 1 1558 586 211 11 0 chr6 127584835 127585010 -21932027 + (CA)n Simple_repeat Simple_repeat 1 177 0 1 1558 180 152 0 0 chr6 127585414 127585447 -21931590 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1558 298 164 27 14 chr6 127586275 127586349 -21930688 + CT-rich Low_complexity Low_complexity 2 76 0 1 1558 728 119 8 0 chr6 127586388 127586506 -21930531 + (TCCCC)n Simple_repeat Simple_repeat 3 121 0 1 1558 606 14 0 0 chr6 127587002 127587073 -21929964 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1558 256 385 72 24 chr6 127588164 127588376 -21928661 + L2a LINE L2 2618 2841 -578 1 1558 195 42 0 0 chr6 127588376 127588400 -21928637 + (CACCC)n Simple_repeat Simple_repeat 1 24 0 1 1558 256 385 72 24 chr6 127588400 127588480 -21928557 + L2a LINE L2 2842 2923 -496 1 1558 242 339 74 21 chr6 127588579 127588769 -21928268 + L2a LINE L2 3058 3257 -169 1 1558 360 0 0 0 chr6 127590019 127590059 -21926978 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1558 183 129 0 0 chr6 127591623 127591654 -21925383 + (GGA)n Simple_repeat Simple_repeat 3 33 0 1 1558 316 347 48 0 chr6 127592342 127592466 -21924571 - L2b LINE L2 -6 3369 3240 1 1558 479 229 0 7 chr6 127592728 127592873 -21924164 + (TATATG)n Simple_repeat Simple_repeat 6 149 0 1 1558 471 87 0 0 chr6 127593343 127593412 -21923625 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1558 365 293 201 82 chr6 127595972 127596151 -21920886 + L1ME4a LINE L1 5745 5923 -201 1 1558 4241 75 9 2 chr6 127596151 127596710 -21920327 + L1_Mus3 LINE L1 6070 6632 -6 1 1558 365 293 201 82 chr6 127596710 127596824 -21920213 + L1ME4a LINE L1 5924 6073 -51 1 1558 668 302 6 47 chr6 127596869 127597039 -21919998 - RSINE1 SINE B4 0 165 3 1 1558 2256 165 33 36 chr6 127598029 127598449 -21918588 - MTD LTR MaLR 0 419 1 1 1558 494 218 76 88 chr6 127598670 127598841 -21918196 - RMER15 LTR ERVL -150 425 257 1 1558 1893 199 71 0 chr6 127599031 127599413 -21917624 - MTD LTR MaLR -1 418 10 1 1558 197 83 0 27 chr6 127599417 127599454 -21917583 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 1 1558 207 0 0 0 chr6 127600313 127600336 -21916701 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1558 506 273 78 8 chr6 127600344 127600473 -21916564 - RSINE1 SINE B4 -25 140 3 1 1558 182 250 0 0 chr6 127600994 127601034 -21916003 - MIR SINE MIR -71 137 98 1 1558 3022 29 0 6 chr6 127601467 127601815 -21915222 - ORR1A0 LTR MaLR 0 346 1 1 1558 1519 201 62 120 chr6 127602388 127602806 -21914231 - ORR1B1 LTR MaLR 0 394 1 2 1558 353 294 81 18 chr6 127603443 127603554 -21913483 - L1MEg LINE L1 -4134 1950 1833 2 1558 829 143 16 0 chr6 127603555 127603681 -21913356 - B1_Mus1 SINE Alu -1 147 20 2 1558 223 238 64 106 chr6 127604022 127604116 -21912921 - MIR3 SINE MIR -54 154 65 2 1558 378 0 0 0 chr6 127604937 127604979 -21912058 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1558 406 261 11 0 chr6 127605390 127605478 -21911559 + Charlie12 DNA MER1_type 7 95 -2778 2 1558 216 0 0 0 chr6 127605484 127605508 -21911529 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1558 338 204 29 88 chr6 127605508 127605600 -21911437 + Charlie12 DNA MER1_type 2781 2867 -6 2 1558 231 241 12 35 chr6 127605799 127605885 -21911152 + CT-rich Low_complexity Low_complexity 1 84 0 2 1558 1172 176 63 52 chr6 127606016 127606395 -21910642 - RMER12 LTR ERVK 0 1322 994 2 1558 636 106 0 0 chr6 127606395 127606489 -21910548 + (GAAA)n Simple_repeat Simple_repeat 4 97 0 2 1558 306 67 0 0 chr6 127606503 127606548 -21910489 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1558 3076 178 107 51 chr6 127606550 127607272 -21909765 - RMER12 LTR ERVK -557 765 4 2 1558 198 143 0 0 chr6 127608366 127608401 -21908636 + (CAT)n Simple_repeat Simple_repeat 2 36 0 2 1558 308 275 0 21 chr6 127608402 127608495 -21908542 + CT-rich Low_complexity Low_complexity 1 91 0 2 1558 328 247 22 11 chr6 127609924 127610014 -21907023 + L3b LINE CR1 109 199 -283 2 1558 253 250 141 43 chr6 127610618 127610710 -21906327 + MT2B LTR ERVL 155 255 -346 2 1558 704 127 55 0 chr6 127610640 127610750 -21906287 + B1_Mur4 SINE Alu 34 149 -1 2 1558 232 226 77 106 chr6 127611551 127611655 -21905382 - MIRc SINE MIR -150 118 16 2 1558 240 246 0 0 chr6 127612093 127612162 -21904875 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1558 288 304 0 0 chr6 127612631 127612710 -21904327 + ID4_ SINE ID 4 82 -1 2 1558 207 0 0 0 chr6 127615614 127615637 -21901400 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1558 338 193 124 16 chr6 127615726 127615847 -21901190 + (CAGGG)n Simple_repeat Simple_repeat 3 136 0 2 1558 845 289 38 4 chr6 127616126 127616362 -21900675 + MER46C DNA MER2_type 95 338 0 2 1558 450 248 50 0 chr6 127616416 127616517 -21900520 - PB1D10 SINE Alu -2 115 10 2 1558 610 283 27 7 chr6 127616439 127616585 -21900452 - ID_B1 SINE B4 -54 170 22 2 1558 265 335 39 106 chr6 127617211 127617418 -21899619 + MIRc SINE MIR 68 260 -8 2 1558 586 129 34 8 chr6 127617976 127618093 -21898944 + RMER1A Other Other 910 1029 -1 2 1558 564 42 0 0 chr6 127621014 127621085 -21895952 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1558 2796 77 24 0 chr6 127621246 127621623 -21895414 - L1_Mus3 LINE L1 -1 6637 6252 2 1558 225 261 0 55 chr6 127621802 127621875 -21895162 + MamGypLTR2b LTR Gypsy 55 123 -799 2 1558 485 260 113 26 chr6 127623089 127623571 -21893466 - L1M4b LINE L1 -3823 3183 2693 2 1558 1598 262 121 15 chr6 127623707 127624237 -21892800 + Lx8 LINE L1 6887 7472 -1 2 1558 1087 258 221 17 chr6 127624236 127624854 -21892183 - L1M4b LINE L1 -4494 2608 1777 2 1558 534 16 0 0 chr6 127624854 127624917 -21892120 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1558 1087 251 240 14 chr6 127624917 127625170 -21891867 - L1M4b LINE L1 -5558 1776 1502 2 1558 736 232 18 61 chr6 127625182 127625347 -21891690 + RSINE1 SINE B4 8 165 0 2 1558 413 297 27 13 chr6 127627750 127627900 -21889137 + L1MB3 LINE L1 6032 6183 0 2 1558 408 20 0 0 chr6 127629066 127629115 -21887922 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1558 187 245 0 58 chr6 127630084 127630136 -21886901 - MER5B DNA MER1_type -49 129 81 2 1558 346 243 42 67 chr6 127630147 127630266 -21886771 + PB1D10 SINE Alu 1 116 -1 2 1558 440 258 129 30 chr6 127630279 127630411 -21886626 + B1F SINE Alu 2 146 -3 2 1558 226 258 78 62 chr6 127631568 127631696 -21885341 + RMER21A LTR ERV1 622 751 -196 2 1558 279 157 0 0 chr6 127631697 127631748 -21885289 + GA-rich Low_complexity Low_complexity 1 51 0 2 1558 379 238 29 19 chr6 127631858 127631961 -21885076 - MIR3 SINE MIR -29 179 76 2 1558 299 331 106 25 chr6 127632260 127632421 -21884616 - MIR SINE MIR -75 187 14 2 1558 225 267 70 84 chr6 127632837 127632980 -21884057 - MIR SINE MIR -41 221 81 2 1558 246 336 133 0 chr6 127633008 127633121 -21883916 - MamSINE1 SINE tRNA -156 134 7 2 1558 214 298 118 12 chr6 127633682 127633767 -21883270 + L2a LINE L2 2827 2920 -499 2 1558 187 300 118 20 chr6 127634037 127634139 -21882898 + L2a LINE L2 3271 3382 -44 2 1558 469 295 84 113 chr6 127634351 127634706 -21882331 + ORR1E LTR MaLR 1 345 -14 2 1558 1291 165 4 35 chr6 127635787 127636019 -21881018 + URR1B DNA MER1_type 1 225 0 2 1558 1729 162 19 56 chr6 127636044 127636365 -21880672 - RLTR27 LTR ERVK 0 309 1 2 1558 1138 249 63 19 chr6 127636742 127637012 -21880025 + MTEb LTR MaLR 5 286 -93 2 1558 1210 75 0 0 chr6 127637075 127637221 -21879816 + B1_Mus2 SINE Alu 1 146 -1 2 1558 40 49 0 0 chr6 127637222 127637283 -21879754 + AT_rich Low_complexity Low_complexity 1 61 0 2 1558 288 211 0 34 chr6 127637293 127637352 -21879685 + MTEb LTR MaLR 319 375 -4 2 1558 356 40 20 0 chr6 127639247 127639297 -21877740 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1558 192 163 0 0 chr6 127639387 127639430 -21877607 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1558 663 108 0 0 chr6 127640761 127640881 -21876156 + (GA)n Simple_repeat Simple_repeat 1 120 0 2 1558 22 35 0 0 chr6 127645170 127645199 -21871838 + AT_rich Low_complexity Low_complexity 1 29 0 2 1558 353 312 28 0 chr6 127645845 127645954 -21871083 - MER5A DNA MER1_type 0 189 78 2 1558 324 0 0 0 chr6 127646806 127646842 -21870195 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1558 829 204 0 0 chr6 127646842 127646979 -21870058 - B1_Mur1 SINE Alu -11 138 2 2 1558 237 282 71 71 chr6 127647458 127647584 -21869453 + MLT1A1 LTR MaLR 5 130 -278 2 1558 230 163 0 23 chr6 127647623 127647667 -21869370 - ORR1B1 LTR MaLR -11 383 341 2 1558 204 297 85 47 chr6 127648207 127648313 -21868724 + MER5A DNA MER1_type 1 110 -79 2 1558 423 0 0 0 chr6 127648332 127648379 -21868658 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1558 441 0 0 0 chr6 127649965 127650014 -21867023 + (CTCA)n Simple_repeat Simple_repeat 4 52 0 2 1558 216 235 0 0 chr6 127650114 127650182 -21866855 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1558 723 225 14 0 chr6 127650598 127650736 -21866301 - ID_B1 SINE B4 -1 223 84 2 1558 453 19 0 0 chr6 127651012 127651066 -21865971 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1558 249 33 0 0 chr6 127652292 127652322 -21864715 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 2 1558 294 206 32 0 chr6 127652327 127652390 -21864647 - ID4 SINE ID -6 77 13 2 1558 222 118 0 0 chr6 127653297 127653331 -21863706 + (TGG)n Simple_repeat Simple_repeat 1 34 0 2 1558 477 50 0 0 chr6 127653331 127653391 -21863646 + (GGA)n Simple_repeat Simple_repeat 1 60 0 2 1558 220 286 110 39 chr6 127654754 127654869 -21862168 - MIRb SINE MIR -47 221 92 2 1558 1041 235 14 0 chr6 127655412 127655625 -21861412 + ID_B1 SINE B4 1 216 -8 2 1558 1224 115 16 0 chr6 127655659 127655904 -21861133 + (TAGA)n Simple_repeat Simple_repeat 1 249 0 2 1558 198 103 0 0 chr6 127655911 127655940 -21861097 + (TAGG)n Simple_repeat Simple_repeat 3 31 0 2 1558 311 65 0 21 chr6 127655940 127655987 -21861050 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2 1558 453 309 39 78 chr6 127656183 127656428 -21860609 + MIRb SINE MIR 35 267 -1 2 1558 189 286 20 0 chr6 127656518 127656567 -21860470 - MER5A DNA MER1_type -21 168 119 2 1558 226 356 29 10 chr6 127656525 127656627 -21860410 + MER5A DNA MER1_type 40 143 -46 2 1558 349 310 125 49 chr6 127657229 127657906 -21859131 + L1MCa LINE L1 1203 2018 -5110 2 1558 314 156 16 0 chr6 127657932 127657996 -21859041 + GA-rich Low_complexity Low_complexity 2 66 0 2 1558 1052 75 0 7 chr6 127658024 127658172 -21858865 + (GGGAGA)n Simple_repeat Simple_repeat 5 151 0 2 1558 197 224 17 0 chr6 127658872 127658930 -21858107 + GA-rich Low_complexity Low_complexity 2 60 0 2 1558 24 53 0 0 chr6 127659126 127659164 -21857873 + AT_rich Low_complexity Low_complexity 1 38 0 2 1558 441 230 98 20 chr6 127660611 127660713 -21856324 - PB1D7 SINE Alu 0 120 11 2 1558 477 289 10 0 chr6 127660756 127660853 -21856184 - PB1D10 SINE Alu -13 104 7 2 1558 222 263 35 0 chr6 127660805 127660862 -21856175 - B4A SINE B4 -151 141 83 2 1558 420 20 0 0 chr6 127661071 127661120 -21855917 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1558 251 307 72 86 chr6 127662079 127662218 -21854819 - MIRb SINE MIR -18 250 114 2 1558 184 239 22 0 chr6 127662374 127662420 -21854617 + L2b LINE L2 3324 3370 -5 2 1558 1199 271 30 17 chr6 127663811 127664108 -21852929 - MTEa LTR MaLR -31 348 48 2 1559 233 167 0 18 chr6 127664175 127664230 -21852807 + (CCTA)n Simple_repeat Simple_repeat 1 54 0 2 1559 1334 251 68 3 chr6 127664369 127664708 -21852329 + MTEa LTR MaLR 14 374 -5 2 1559 531 0 0 0 chr6 127665255 127665314 -21851723 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1559 24 32 0 0 chr6 127665447 127665478 -21851559 + AT_rich Low_complexity Low_complexity 1 31 0 2 1559 502 239 20 92 chr6 127665483 127665635 -21851402 - B1F SINE Alu -2 147 7 2 1559 203 139 56 0 chr6 127665940 127665976 -21851061 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2 1559 372 77 0 0 chr6 127667056 127667108 -21849929 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1559 399 118 0 0 chr6 127667217 127667293 -21849744 + (T)n Simple_repeat Simple_repeat 1 76 0 2 1559 804 294 65 55 chr6 127667294 127667604 -21849433 + MER2 DNA MER2_type 33 345 0 2 1559 226 363 32 16 chr6 127668193 127668319 -21848718 + L3 LINE CR1 3177 3304 -1185 2 1559 291 312 46 0 chr6 127668543 127668652 -21848385 - MIR SINE MIR -34 228 115 2 1559 351 0 0 0 chr6 127669177 127669216 -21847821 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1559 268 325 67 21 chr6 127670768 127671009 -21846028 + L1MC4a LINE L1 6447 6704 -1338 3 1559 193 146 42 0 chr6 127671009 127671057 -21845980 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1559 202 214 0 51 chr6 127671065 127671124 -21845913 + (CATA)n Simple_repeat Simple_repeat 2 57 0 3 1559 268 309 146 28 chr6 127671124 127671337 -21845700 + L1MC4a LINE L1 6613 6850 -1145 3 1559 203 143 114 0 chr6 127671536 127671606 -21845431 + (TAGA)n Simple_repeat Simple_repeat 2 79 0 3 1559 427 113 25 57 chr6 127671726 127671885 -21845152 + (TAGA)n Simple_repeat Simple_repeat 4 157 0 3 1559 356 0 0 22 chr6 127671894 127671939 -21845098 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1559 185 65 32 0 chr6 127672160 127672191 -21844846 + (AGGGGG)n Simple_repeat Simple_repeat 2 33 0 3 1559 1166 48 7 0 chr6 127672265 127672411 -21844626 + B1_Mus2 SINE Alu 1 147 0 3 1559 267 329 42 49 chr6 127672971 127673115 -21843922 + ORR1E LTR MaLR 1 143 -216 3 1559 180 333 83 33 chr6 127674137 127674258 -21842779 + L2 LINE L2 2302 2428 -991 3 1559 216 86 0 0 chr6 127674452 127674487 -21842550 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1559 846 64 46 23 chr6 127674492 127674667 -21842370 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 3 1559 375 252 96 30 chr6 127675144 127675279 -21841758 + MLT1A1 LTR MaLR 253 396 -12 3 1559 238 235 42 42 chr6 127676913 127676984 -21840053 + MTEb LTR MaLR 289 359 -20 3 1559 414 0 0 0 chr6 127677391 127677437 -21839600 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1559 291 288 0 0 chr6 127679112 127679185 -21837852 + (TGG)n Simple_repeat Simple_repeat 3 75 0 3 1559 325 259 0 12 chr6 127679235 127679317 -21837720 + ID4_ SINE ID 1 81 -2 3 1559 405 252 18 27 chr6 127680914 127681024 -21836013 + PB1D10 SINE Alu 1 109 -8 3 1559 393 22 0 0 chr6 127681026 127681072 -21835965 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1559 580 189 16 0 chr6 127681245 127681367 -21835670 + ORR1D1 LTR MaLR 1 124 -250 3 1559 198 136 0 0 chr6 127681388 127681432 -21835605 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1559 263 282 13 13 chr6 127681535 127681614 -21835423 + MIR SINE MIR 165 243 -19 3 1559 378 260 10 50 chr6 127682349 127682450 -21834587 - B1F SINE Alu -29 120 24 3 1559 250 189 38 0 chr6 127683024 127683077 -21833960 + MIRm SINE MIR 109 163 -113 3 1559 778 139 28 28 chr6 127683388 127683529 -21833508 - B1_Mus2 SINE Alu -1 146 6 3 1559 263 336 76 9 chr6 127683615 127683720 -21833317 + ORR1D1 LTR MaLR 259 370 0 3 1559 603 262 57 23 chr6 127684567 127684743 -21832294 + B4 SINE B4 109 290 -2 3 1559 444 82 0 0 chr6 127684768 127684829 -21832208 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1559 396 0 0 0 chr6 127684831 127684875 -21832162 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1559 223 174 0 0 chr6 127685011 127685057 -21831980 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1559 320 269 46 37 chr6 127685058 127685166 -21831871 + L1MC4a LINE L1 6576 6684 -1198 3 1559 313 375 21 25 chr6 127686707 127686945 -21830092 - L2 LINE L2 -787 2632 2396 3 1559 3851 18 0 0 chr6 127687185 127687632 -21829405 + MERVL-int LTR ERVL 2409 2855 -2630 3 1559 244 347 32 8 chr6 127687710 127687835 -21829202 + L1M5 LINE L1 5501 5628 -496 3 1559 378 0 0 0 chr6 127689974 127690016 -21827021 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 3 1559 184 265 20 0 chr6 127690307 127690356 -21826681 - MIR SINE MIR -70 138 89 3 1559 483 291 37 37 chr6 127691548 127691737 -21825300 + MER5A DNA MER1_type 1 189 0 3 1559 396 0 0 0 chr6 127693421 127693465 -21823572 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1559 623 206 86 22 chr6 127694312 127694451 -21822586 - B1_Mur1 SINE Alu 0 149 2 3 1559 378 61 0 0 chr6 127694476 127694525 -21822512 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1559 440 269 36 18 chr6 127694534 127694644 -21822393 - RSINE1 SINE B4 -17 148 37 3 1559 255 256 12 60 chr6 127695052 127695135 -21821902 + PB1D9 SINE Alu 34 112 -8 3 1559 404 301 165 40 chr6 127695148 127695573 -21821464 + L1MEc LINE L1 130 607 -5793 3 1559 299 241 0 114 chr6 127695597 127695728 -21821309 + L1MEc LINE L1 765 880 -5520 3 1559 1532 196 99 38 chr6 127695794 127696187 -21820850 + MTC LTR MaLR 5 421 0 3 1559 3209 220 68 148 chr6 127696227 127696453 -21820584 + MTD-int LTR MaLR 68 237 -1021 3 1559 777 267 10 10 chr6 127696453 127696661 -21820376 - B3 SINE B2 -7 209 2 3 1559 3209 220 68 148 chr6 127696661 127697722 -21819315 + MTD-int LTR MaLR 238 1252 -6 3 1559 1797 208 56 13 chr6 127697740 127698134 -21818903 + MTD LTR MaLR 1 411 -8 3 1559 243 282 59 8 chr6 127698197 127698315 -21818722 + L1MEc LINE L1 2217 2340 -4075 3 1559 411 215 0 116 chr6 127698318 127698439 -21818598 + MT2B LTR ERVL 150 256 -345 3 1559 877 75 2 17 chr6 127698343 127698489 -21818548 + B1_Mus1 SINE Alu 7 140 -10 3 1559 822 266 41 37 chr6 127698932 127699231 -21817806 + L1MB2 LINE L1 5510 5832 -352 3 1559 297 267 27 0 chr6 127699232 127699307 -21817730 + ID4_ SINE ID 5 81 -2 3 1559 667 298 37 11 chr6 127699324 127699672 -21817365 + L1MB2 LINE L1 5818 6174 -9 3 1559 547 238 63 8 chr6 127700840 127700967 -21816070 + B1F1 SINE Alu 5 138 -11 3 1559 288 277 11 11 chr6 127700967 127701062 -21815975 + (CA)n Simple_repeat Simple_repeat 1 95 0 3 1559 312 70 0 0 chr6 127701076 127701119 -21815918 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1559 195 232 0 0 chr6 127701118 127701200 -21815837 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1559 437 223 6 0 chr6 127701221 127701387 -21815650 + (CA)n Simple_repeat Simple_repeat 2 168 0 3 1559 260 308 149 8 chr6 127702068 127702202 -21814835 - MER5A DNA MER1_type -15 174 22 3 1559 287 315 23 30 chr6 127702276 127702407 -21814630 + MIR SINE MIR 87 216 -46 3 1559 774 289 51 62 chr6 127704550 127704893 -21812144 + ORR1E LTR MaLR 8 376 -3 3 1559 633 328 33 55 chr6 127705242 127705513 -21811524 + B4A SINE B4 27 291 -1 3 1559 347 281 20 20 chr6 127705538 127705636 -21811401 + (CATG)n Simple_repeat Simple_repeat 3 100 0 3 1559 248 298 63 47 chr6 127705938 127706065 -21810972 - MLT1A1 LTR MaLR -9 399 271 3 1559 1071 211 46 102 chr6 127706595 127706953 -21810084 + MTEb LTR MaLR 1 376 -3 3 1559 312 27 0 0 chr6 127708168 127708205 -21808832 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3 1559 451 271 274 18 chr6 127709177 127709326 -21807711 + B4A SINE B4 24 211 -81 3 1559 557 14 0 14 chr6 127709326 127709397 -21807640 + (TTTTG)n Simple_repeat Simple_repeat 2 71 0 3 1559 451 299 45 19 chr6 127709397 127709468 -21807569 + B4A SINE B4 212 283 -9 3 1559 262 352 21 9 chr6 127709589 127709714 -21807323 + MIRb SINE MIR 62 194 -74 3 1559 235 0 28 28 chr6 127710059 127710095 -21806942 + (TTG)n Simple_repeat Simple_repeat 2 37 0 3 1559 1762 216 68 16 chr6 127710105 127710490 -21806547 + MTD LTR MaLR 15 419 0 3 1559 988 292 93 24 chr6 127710490 127710602 -21806435 + MLT1C LTR MaLR 69 186 -281 3 1559 219 69 0 0 chr6 127710602 127710631 -21806406 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1559 988 292 93 24 chr6 127710631 127710883 -21806154 + MLT1C LTR MaLR 187 458 -9 3 1559 436 285 51 68 chr6 127712060 127712108 -21804929 + B4 SINE B4 51 219 -68 3 1559 737 186 0 0 chr6 127712108 127712232 -21804805 + B1_Mur1 SINE Alu 19 142 -7 3 1559 291 333 9 43 chr6 127714758 127714874 -21802163 - L2c LINE L2 -221 3166 3055 3 1559 626 232 206 16 chr6 127715195 127715379 -21801658 + ID_B1 SINE B4 5 223 -1 3 1559 345 109 0 0 chr6 127715653 127715708 -21801329 + (CCA)n Simple_repeat Simple_repeat 2 56 0 3 1559 185 257 0 0 chr6 127716093 127716128 -21800909 + L2c LINE L2 3277 3311 -76 3 1559 597 64 0 0 chr6 127716523 127716601 -21800436 + (TC)n Simple_repeat Simple_repeat 1 78 0 3 1559 25 31 0 0 chr6 127716900 127716932 -21800105 + AT_rich Low_complexity Low_complexity 1 32 0 3 1559 486 0 0 0 chr6 127718508 127718562 -21798475 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1559 184 342 90 41 chr6 127720803 127720925 -21796112 - MIR3 SINE MIR -51 157 30 3 1559 204 125 0 0 chr6 127721453 127721485 -21795552 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1559 336 281 24 0 chr6 127722295 127722377 -21794660 - MER5B DNA MER1_type 0 178 95 3 1559 249 267 93 0 chr6 127722555 127722630 -21794407 - ID4_ SINE ID 0 83 2 3 1559 244 279 101 14 chr6 127722584 127722653 -21794384 - ZP3AR Satellite Satellite -123 89 15 3 1559 226 250 263 0 chr6 127722634 127722710 -21794327 - PB1D9 SINE Alu -7 113 18 3 1559 227 217 174 0 chr6 127723665 127723734 -21793303 + ID4_ SINE ID 1 81 -2 3 1559 862 305 24 35 chr6 127723751 127724040 -21792997 + B4A SINE B4 1 286 -6 3 1559 2105 103 18 60 chr6 127724705 127725036 -21792001 + ORR1A3 LTR MaLR 1 317 -9 3 1559 819 262 105 26 chr6 127725286 127725361 -21791676 + B4 SINE B4 5 100 -192 3 1559 694 58 19 0 chr6 127725361 127725465 -21791572 + (GA)n Simple_repeat Simple_repeat 1 106 0 3 1559 819 262 105 26 chr6 127725465 127725656 -21791381 + B4 SINE B4 101 292 0 3 1559 300 293 30 0 chr6 127725755 127725854 -21791183 + (TATG)n Simple_repeat Simple_repeat 2 103 0 3 1559 588 250 93 74 chr6 127727354 127727682 -21789355 + ORR1E LTR MaLR 27 379 0 3 1559 289 315 67 0 chr6 127728716 127728805 -21788232 + MIRb SINE MIR 31 125 -143 3 1559 360 0 0 0 chr6 127729207 127729247 -21787790 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1559 240 197 0 70 chr6 127729460 127729531 -21787506 + CT-rich Low_complexity Low_complexity 5 70 0 3 1559 1345 224 128 18 chr6 127730376 127730713 -21786324 + MTEa LTR MaLR 3 376 -3 3 1559 643 240 42 17 chr6 127733177 127733356 -21783681 - B3A SINE B2 -5 188 2 3 1559 492 188 10 10 chr6 127735509 127735606 -21781431 + Charlie12 DNA MER1_type 773 869 -2004 3 1559 205 247 12 99 chr6 127736551 127736632 -21780405 + L2c LINE L2 3287 3360 -27 3 1559 195 42 0 0 chr6 127736646 127736670 -21780367 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 3 1559 319 214 33 32 chr6 127738919 127739003 -21778034 - L2c LINE L2 -24 3351 3272 3 1559 430 240 9 19 chr6 127741389 127741495 -21775542 - MIRb SINE MIR -127 141 37 4 1559 189 121 0 0 chr6 127741771 127741804 -21775233 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 1559 337 250 13 0 chr6 127741980 127742056 -21774981 + C-rich Low_complexity Low_complexity 4 80 0 4 1559 269 35 86 17 chr6 127743446 127743504 -21773533 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 4 1559 493 244 16 18 chr6 127743699 127743826 -21773211 - MIR3 SINE MIR -31 177 58 4 1559 262 198 34 23 chr6 127744530 127744618 -21772419 + T-rich Low_complexity Low_complexity 3 91 0 4 1559 429 20 0 0 chr6 127745680 127745730 -21771307 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1559 492 279 50 37 chr6 127746983 127747187 -21769850 + MIRb SINE MIR 11 213 -63 4 1559 494 272 29 0 chr6 127750639 127750812 -21766225 - MIRc SINE MIR -68 200 25 4 1559 21 0 0 0 chr6 127752308 127752329 -21764708 + GC_rich Low_complexity Low_complexity 1 21 0 4 1559 791 329 11 69 chr6 127753670 127754049 -21762988 - RLTR14-int LTR ERV1 -474 4843 4487 4 1559 269 219 0 45 chr6 127754246 127754313 -21762724 - RLTR14-int LTR ERV1 -822 4495 4432 4 1559 2278 165 29 24 chr6 127754838 127755249 -21761788 - MTC LTR MaLR -8 413 1 4 1559 983 333 33 31 chr6 127755497 127756043 -21760994 - RLTR14-int LTR ERV1 -1685 3632 3086 4 1559 407 319 16 15 chr6 127756387 127756581 -21760456 - MURVY-int LTR ERV1 -3190 4416 4126 4 1559 519 339 65 42 chr6 127756960 127757329 -21759708 - RLTR14-int LTR ERV1 -2994 2323 2032 4 1559 624 344 36 51 chr6 127757563 127758172 -21758865 - RLTR14-int LTR ERV1 -4362 3244 2651 4 1559 296 368 17 6 chr6 127759141 127759316 -21757721 - RLTR14-int LTR ERV1 -3578 1485 1309 4 1559 304 209 34 34 chr6 127759511 127759600 -21757437 - RLTR14-int LTR ERV1 -4417 900 812 4 1559 687 295 32 90 chr6 127760178 127760489 -21756548 - RLTR14-int LTR ERV1 -4874 443 152 4 1559 4383 97 168 90 chr6 127760489 127761330 -21755707 + RMER17A2 LTR ERVK 1 906 0 4 1559 687 295 32 90 chr6 127761330 127761487 -21755550 - RLTR14-int LTR ERV1 -5166 151 3 4 1559 531 288 14 28 chr6 127762093 127762236 -21754801 + RSINE1 SINE B4 25 165 0 4 1559 757 255 19 86 chr6 127762272 127762482 -21754555 + B3A SINE B2 3 198 0 4 1559 22 0 0 0 chr6 127762593 127762615 -21754422 + AT_rich Low_complexity Low_complexity 1 22 0 4 1559 527 307 76 29 chr6 127762615 127762853 -21754184 + Charlie1a DNA MER1_type 961 1209 -246 4 1559 536 230 110 44 chr6 127763077 127763259 -21753778 + Charlie1a DNA MER1_type 1256 1449 -6 4 1559 356 278 54 110 chr6 127763464 127763799 -21753238 - L2c LINE L2 -61 3314 3003 4 1559 25 0 0 0 chr6 127764014 127764039 -21752998 + GC_rich Low_complexity Low_complexity 1 25 0 4 1559 252 0 0 0 chr6 127765488 127765516 -21751521 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1559 438 167 0 0 chr6 127767070 127767154 -21749883 + G-rich Low_complexity Low_complexity 1 84 0 4 1559 219 103 0 0 chr6 127767360 127767399 -21749638 + (G)n Simple_repeat Simple_repeat 1 39 0 4 1559 662 166 7 19 chr6 127767477 127767631 -21749406 + GA-rich Low_complexity Low_complexity 1 152 0 4 1559 199 317 217 22 chr6 127767631 127767857 -21749180 - L2 LINE L2 -650 2769 2500 4 1559 212 233 0 0 chr6 127768054 127768097 -21748940 + (TTCG)n Simple_repeat Simple_repeat 2 44 0 4 1559 186 156 0 0 chr6 127769279 127769311 -21747726 - L2c LINE L2 0 3387 3356 4 1559 627 60 12 0 chr6 127771891 127771974 -21745063 - B1_Mm SINE Alu 0 147 64 4 1559 438 20 0 0 chr6 127772073 127772124 -21744913 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1559 630 26 0 0 chr6 127772124 127772200 -21744837 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1559 1963 148 273 4 chr6 127775454 127775915 -21741122 + RMER4B LTR ERVK 1 585 0 4 1559 222 296 67 22 chr6 127777109 127777199 -21739838 + B4 SINE B4 2 95 -197 4 1559 297 51 0 0 chr6 127777202 127777241 -21739796 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 4 1559 2226 117 38 59 chr6 127778251 127778642 -21738395 - RLTR9A2 LTR ERVK 0 383 1 4 1559 471 307 85 28 chr6 127778915 127779056 -21737981 - RSINE1 SINE B4 -15 150 2 4 1559 188 0 0 69 chr6 127780812 127780841 -21736196 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 4 1559 309 51 0 0 chr6 127781586 127781625 -21735412 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1559 361 370 21 28 chr6 127782644 127782933 -21734104 + MER52-int LTR ERV1 4976 5262 -1829 4 1559 837 292 28 21 chr6 127783085 127783368 -21733669 - B4A SINE B4 -6 286 2 4 1559 1056 279 67 32 chr6 127786143 127786547 -21730490 - Lx9 LINE L1 -175 7469 7052 4 1559 1150 249 197 51 chr6 127786590 127787021 -21730016 - Lx8 LINE L1 -717 6756 6263 4 1559 229 153 0 106 chr6 127787028 127787094 -21729943 - Kanga2_a DNA Tc2 -222 666 608 4 1559 692 208 97 41 chr6 127787144 127787230 -21729807 - B3 SINE B2 -9 207 121 4 1559 207 0 0 0 chr6 127787230 127787253 -21729784 + (CCCCCA)n Simple_repeat Simple_repeat 3 25 0 4 1559 692 208 97 41 chr6 127787253 127787362 -21729675 - B3 SINE B2 -96 120 3 4 1559 273 286 175 27 chr6 127787467 127787650 -21729387 - Lx9 LINE L1 -1600 6044 5835 4 1559 408 280 60 87 chr6 127788098 127788260 -21728777 + B3A SINE B2 1 172 -26 4 1559 423 0 0 0 chr6 127788260 127788307 -21728730 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1559 321 280 60 87 chr6 127788307 127788328 -21728709 + B2_Mm2 SINE B2 161 179 -16 4 1559 204 211 0 0 chr6 127789287 127789325 -21727712 + C-rich Low_complexity Low_complexity 1 38 0 4 1559 494 189 0 11 chr6 127791021 127791112 -21725925 - RSINE1 SINE B4 -65 100 11 4 1559 331 26 0 0 chr6 127791214 127791253 -21725784 - ORR1B2 LTR MaLR -1 366 328 4 1559 423 0 0 0 chr6 127791259 127791306 -21725731 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1559 907 245 162 18 chr6 127791311 127791639 -21725398 + MTEa LTR MaLR 1 375 -4 4 1559 416 233 36 64 chr6 127791686 127791796 -21725241 - B3A SINE B2 0 198 92 4 1559 360 333 85 45 chr6 127791800 127791976 -21725061 - Tigger7 DNA MER2_type -2265 226 44 4 1559 463 228 31 16 chr6 127792319 127792448 -21724589 - B1F SINE Alu -18 131 1 4 1559 859 228 20 10 chr6 127792840 127793039 -21723998 + B3 SINE B2 5 205 -11 4 1559 336 293 139 62 chr6 127793125 127793413 -21723624 - L1M5 LINE L1 -1608 4538 4229 4 1559 22 0 0 0 chr6 127793959 127793981 -21723056 + AT_rich Low_complexity Low_complexity 1 22 0 4 1559 429 90 0 0 chr6 127793983 127794050 -21722987 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1559 204 67 0 0 chr6 127794521 127794551 -21722486 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1559 351 253 10 40 chr6 127794551 127794645 -21722392 - PB1D10 SINE Alu -1 116 25 4 1559 333 0 0 0 chr6 127794808 127794845 -21722192 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1560 657 276 26 23 chr6 127795738 127796039 -21720998 + MTE2b LTR MaLR 1 359 -20 4 1560 5196 99 24 41 chr6 127797413 127798244 -21718793 + RLTR22_Mus LTR ERVK 1 817 -991 4 1560 348 274 72 102 chr6 127798393 127798629 -21718408 + RMER12 LTR ERVK 1094 1322 0 4 1560 279 0 0 0 chr6 127798890 127798921 -21718116 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 4 1560 687 323 51 0 chr6 127799250 127799467 -21717570 + 7SK RNA RNA 14 241 -90 4 1560 180 340 79 40 chr6 127799495 127799596 -21717441 - MIR SINE MIR -89 173 69 4 1560 204 324 58 10 chr6 127800795 127800898 -21716139 - MIR3 SINE MIR 0 208 101 4 1560 439 186 7 132 chr6 127801910 127802046 -21714991 - PB1D7 SINE Alu -1 119 1 4 1560 1414 72 16 11 chr6 127802461 127802645 -21714392 + B2_Mm2 SINE B2 4 188 -7 4 1560 323 179 70 93 chr6 127802798 127802884 -21714153 - MTE2b LTR MaLR 0 408 294 4 1560 247 190 165 0 chr6 127803262 127803341 -21713696 + MIR SINE MIR 46 137 -71 4 1560 23 0 0 0 chr6 127804043 127804066 -21712971 + AT_rich Low_complexity Low_complexity 1 23 0 4 1560 375 257 65 28 chr6 127804298 127804406 -21712631 - MIR SINE MIR -10 252 141 4 1560 582 313 0 114 chr6 127804936 127805163 -21711874 - MTE2b LTR MaLR -141 238 38 4 1560 1450 203 64 102 chr6 127805290 127805712 -21711325 + MTD LTR MaLR 14 419 0 4 1560 590 304 152 25 chr6 127806561 127806838 -21710199 + MER2 DNA MER2_type 23 334 -11 4 1560 198 263 0 0 chr6 127806975 127807032 -21710005 + GA-rich Low_complexity Low_complexity 4 60 0 4 1560 1214 62 0 0 chr6 127807106 127807252 -21709785 + B1_Mus1 SINE Alu 1 146 -2 4 1560 190 327 51 34 chr6 127807912 127808029 -21709008 + MIRb SINE MIR 12 130 -138 4 1560 307 267 71 136 chr6 127808064 127808233 -21708804 + ID_B1 SINE B4 19 176 -48 4 1560 346 350 76 10 chr6 127808480 127808769 -21708268 + L1MC4 LINE L1 7277 7584 -458 4 1560 526 197 15 0 chr6 127809201 127809338 -21707699 + (TA)n Simple_repeat Simple_repeat 2 140 0 4 1560 314 211 226 7 chr6 127809369 127809467 -21707570 - B3 SINE B2 -13 203 86 4 1560 194 81 27 0 chr6 127809509 127809546 -21707491 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 4 1560 480 252 70 8 chr6 127809777 127809905 -21707132 - B3 SINE B2 -77 139 4 4 1560 373 262 30 0 chr6 127809907 127810071 -21706966 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 4 1560 243 0 0 0 chr6 127810076 127810103 -21706934 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1560 225 0 0 0 chr6 127810103 127810127 -21706910 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 1560 330 91 0 0 chr6 127811098 127811153 -21705884 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1560 1062 213 24 5 chr6 127811286 127811498 -21705539 + B3 SINE B2 1 216 0 4 1560 198 71 0 0 chr6 127811604 127811632 -21705405 + (TATG)n Simple_repeat Simple_repeat 3 30 0 4 1560 585 290 139 41 chr6 127812233 127812578 -21704459 + MTEb LTR MaLR 1 379 0 4 1560 1220 48 0 0 chr6 127812643 127812790 -21704247 + B1_Mm SINE Alu 1 147 0 4 1560 198 0 0 0 chr6 127812790 127812812 -21704225 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1560 866 196 162 0 chr6 127812908 127813087 -21703950 + B3 SINE B2 4 211 -5 4 1560 349 247 0 0 chr6 127813327 127813400 -21703637 + B3A SINE B2 1 73 -125 4 1560 267 268 28 99 chr6 127813586 127813727 -21703310 + L1MD1 LINE L1 4318 4448 -1698 4 1560 570 323 75 31 chr6 127813727 127813954 -21703083 - MLT1A LTR MaLR 0 374 138 4 1560 478 321 98 55 chr6 127813954 127814378 -21702659 - MT2A LTR ERVL 0 533 3 4 1560 1252 213 108 28 chr6 127814447 127814823 -21702214 + MT2B2 LTR ERVL 10 543 -41 5 1560 330 26 0 0 chr6 127814870 127814909 -21702128 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1560 1665 27 0 0 chr6 127814940 127815126 -21701911 - B2_Mm1a SINE B2 -6 187 2 5 1560 353 297 113 88 chr6 127815196 127815435 -21701602 - MTE2a LTR MaLR -9 370 95 5 1560 2671 302 103 125 chr6 127815487 127816775 -21700262 - ORR1E-int LTR MaLR -40 1540 298 5 1560 2148 156 79 3 chr6 127816775 127817166 -21699871 + MTC LTR MaLR 1 421 0 5 1560 2671 302 103 125 chr6 127817166 127817425 -21699612 - ORR1E-int LTR MaLR -1283 297 27 5 1560 614 291 139 56 chr6 127817456 127817780 -21699257 - ORR1E LTR MaLR -5 354 4 5 1560 1286 286 97 41 chr6 127817822 127818463 -21698574 + L1MD1 LINE L1 4439 5115 -1031 4 1560 275 181 14 0 chr6 127818513 127818585 -21698452 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1560 688 266 60 39 chr6 127818590 127818875 -21698162 - B4A SINE B4 0 292 2 5 1560 729 23 0 0 chr6 127818898 127818985 -21698052 + (GGGA)n Simple_repeat Simple_repeat 2 88 0 5 1560 373 249 53 24 chr6 127819011 127819180 -21697857 + L1MD1 LINE L1 5218 5391 -755 4 1560 877 277 115 16 chr6 127819250 127819624 -21697413 + L1MD1 LINE L1 5514 5924 -318 4 1560 325 252 66 30 chr6 127819811 127819924 -21697113 + MTEa LTR MaLR 269 408 0 5 1560 635 288 121 0 chr6 127819957 127820197 -21696840 + L1MD1 LINE L1 5974 6242 0 4 1560 186 43 0 0 chr6 127820666 127820689 -21696348 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 5 1560 480 267 91 75 chr6 127821061 127821247 -21695790 + B3A SINE B2 2 190 -5 5 1560 673 250 124 5 chr6 127821249 127821442 -21695595 + B3 SINE B2 1 216 0 5 1560 284 252 76 115 chr6 127821910 127822067 -21694970 - MLT1J LTR MaLR -143 369 219 5 1560 224 170 64 0 chr6 127822375 127822422 -21694615 + MIRb SINE MIR 207 256 -12 5 1560 23 33 0 0 chr6 127823010 127823040 -21693997 + AT_rich Low_complexity Low_complexity 1 30 0 5 1560 1113 258 39 68 chr6 127823533 127823916 -21693121 - MTE2b LTR MaLR -7 372 1 5 1560 518 114 48 0 chr6 127823965 127824070 -21692967 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 5 1560 243 88 0 0 chr6 127824066 127824100 -21692937 + (CGATA)n Simple_repeat Simple_repeat 2 35 0 5 1560 207 0 0 0 chr6 127824116 127824139 -21692898 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1560 372 252 40 10 chr6 127824149 127824249 -21692788 + PB1D7 SINE Alu 3 105 -15 5 1560 697 249 69 73 chr6 127824415 127824590 -21692447 + B3A SINE B2 1 173 -43 5 1560 1744 206 60 11 chr6 127824590 127824943 -21692094 + ORR1D2 LTR MaLR 1 370 0 5 1560 696 249 69 73 chr6 127824943 127824971 -21692066 + B3 SINE B2 174 202 -14 5 1560 554 266 163 9 chr6 127826276 127826559 -21690478 - MTE2a LTR MaLR -43 336 1 5 1560 483 253 225 17 chr6 127826729 127826902 -21690135 + MTEb LTR MaLR 1 209 -170 5 1560 295 288 10 73 chr6 127827898 127828087 -21688950 + B4 SINE B4 7 179 -113 5 1560 243 236 0 0 chr6 127828172 127828227 -21688810 + CT-rich Low_complexity Low_complexity 5 59 0 5 1560 250 299 150 30 chr6 127828705 127828805 -21688232 - MER45R DNA Tip100 -1465 116 5 5 1560 216 67 0 0 chr6 127828923 127828953 -21688084 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 1560 1978 117 131 15 chr6 127828954 127829291 -21687746 + ORR1C2 LTR MaLR 1 376 -8 5 1560 919 229 5 30 chr6 127829561 127829764 -21687273 + B3A SINE B2 1 198 0 5 1560 825 167 0 0 chr6 127830580 127830730 -21686307 + GA-rich Low_complexity Low_complexity 1 150 0 5 1560 334 283 79 121 chr6 127830736 127830755 -21686282 - MER33 DNA MER1_type -67 257 240 5 1560 345 47 0 0 chr6 127830755 127830798 -21686239 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 5 1560 334 283 79 121 chr6 127830798 127831043 -21685994 - MER33 DNA MER1_type -85 239 4 5 1560 381 329 29 67 chr6 127831266 127831504 -21685533 - L1MEe LINE L1 -4002 852 624 5 1560 511 112 0 22 chr6 127832041 127832055 -21684982 + (TC)n Simple_repeat Simple_repeat 2 15 0 5 1560 738 0 0 0 chr6 127832055 127832137 -21684900 + (TTC)n Simple_repeat Simple_repeat 3 84 0 5 1560 511 112 0 22 chr6 127832137 127832213 -21684824 + (TC)n Simple_repeat Simple_repeat 1 75 0 5 1560 1305 54 0 0 chr6 127832469 127832635 -21684402 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 5 1560 226 217 16 62 chr6 127833467 127833531 -21683506 + ID_B1 SINE B4 96 156 -68 5 1560 358 263 34 0 chr6 127834099 127834217 -21682820 + MER33 DNA MER1_type 134 255 -69 5 1560 275 357 0 34 chr6 127834228 127834405 -21682632 - L1MA7 LINE L1 -14 6277 6107 5 1560 308 262 19 28 chr6 127834629 127834735 -21682302 + MLT1A1 LTR MaLR 304 408 0 5 1560 198 103 0 0 chr6 127834893 127834922 -21682115 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1560 843 197 42 5 chr6 127835226 127835415 -21681622 - B3 SINE B2 -1 215 20 5 1560 234 287 29 38 chr6 127835589 127835694 -21681343 + MLT1A1 LTR MaLR 304 407 -1 5 1560 252 316 82 0 chr6 127835722 127835820 -21681217 - LTR16A LTR ERVL -35 416 311 5 1560 281 284 12 12 chr6 127836199 127836281 -21680756 - MLT1A1 LTR MaLR -2 406 325 5 1560 207 0 0 0 chr6 127836291 127836314 -21680723 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1560 243 348 0 0 chr6 127836432 127836521 -21680516 + (CA)n Simple_repeat Simple_repeat 2 90 0 5 1560 825 296 113 28 chr6 127836769 127837096 -21679941 + MTEa LTR MaLR 21 375 -4 5 1560 188 265 0 0 chr6 127839607 127839656 -21677381 + L2b LINE L2 3322 3370 -5 5 1560 260 267 23 0 chr6 127840167 127840253 -21676784 + MIR SINE MIR 59 146 -116 5 1560 1328 204 39 88 chr6 127840480 127840827 -21676210 + ORR1C2 LTR MaLR 53 382 -2 5 1560 793 362 75 25 chr6 127841657 127842213 -21674824 - MER45B DNA Tip100 0 1040 457 5 1560 634 322 42 5 chr6 127842346 127842561 -21674476 - MER45B DNA Tip100 -817 223 1 5 1560 2033 142 125 3 chr6 127842601 127842976 -21674061 + MTC LTR MaLR 1 421 0 5 1560 610 171 77 0 chr6 127843194 127843311 -21673726 + PB1 SINE Alu 1 126 -1 5 1560 438 20 0 0 chr6 127844595 127844646 -21672391 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1560 512 277 70 33 chr6 127845437 127845650 -21671387 + L1MB4 LINE L1 5959 6179 -1 5 1560 247 204 57 55 chr6 127846033 127846145 -21670892 - MIR SINE MIR -124 144 39 5 1560 477 0 0 0 chr6 127847717 127847770 -21669267 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1560 1995 138 31 39 chr6 127847918 127848303 -21668734 - ORR1C2 LTR MaLR -2 382 1 5 1560 214 338 12 12 chr6 127848349 127848430 -21668607 + ID SINE ID 3 83 -141 5 1560 1507 244 8 85 chr6 127848611 127849010 -21668027 + MTEb LTR MaLR 4 371 -8 5 1560 266 269 31 41 chr6 127849884 127849981 -21667056 - MER94 DNA AcHobo -15 119 24 5 1560 220 311 126 0 chr6 127850055 127850158 -21666879 + MIR SINE MIR 73 188 -74 5 1560 484 328 73 58 chr6 127850832 127851175 -21665862 + ORR1E LTR MaLR 1 348 -11 5 1560 341 252 24 137 chr6 127851570 127851694 -21665343 - RMER20B LTR ERVK -517 110 1 5 1560 332 324 77 31 chr6 127851749 127851968 -21665069 - MIRc SINE MIR -27 241 8 5 1560 240 370 0 11 chr6 127852084 127852177 -21664860 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 1560 378 277 0 0 chr6 127852179 127852320 -21664717 + (TATG)n Simple_repeat Simple_repeat 4 144 0 5 1560 331 220 20 10 chr6 127852373 127852474 -21664563 + (TATATG)n Simple_repeat Simple_repeat 6 107 0 5 1560 392 296 91 80 chr6 127853342 127853629 -21663408 + B4A SINE B4 3 292 0 5 1560 660 222 0 0 chr6 127853647 127853923 -21663114 + (CA)n Simple_repeat Simple_repeat 1 276 0 5 1560 229 380 13 0 chr6 127854537 127854616 -21662421 + MER81 DNA AcHobo 34 113 -1 5 1560 447 214 3 36 chr6 127855192 127855282 -21661755 + PB1D10 SINE Alu 10 98 -51 5 1560 508 304 63 86 chr6 127855282 127855711 -21661326 + MTD LTR MaLR 1 419 0 5 1560 447 206 0 40 chr6 127855711 127855730 -21661307 + PB1D10 SINE Alu 99 115 -2 5 1560 260 323 8 8 chr6 127855789 127855920 -21661117 + RLTR4_MM-int LTR ERV1 395 525 -4538 5 1560 536 362 22 19 chr6 127856050 127856368 -21660669 + RLTR4_MM-int LTR ERV1 1300 1618 -3445 5 1560 3535 357 39 30 chr6 127856685 127859009 -21658028 + RLTR4_MM-int LTR ERV1 2081 4426 -3175 5 1560 454 349 50 27 chr6 127860171 127860516 -21656521 + MURVY-int LTR ERV1 7053 7714 -64 5 1560 359 366 106 11 chr6 127861200 127861388 -21655649 - MLT1J LTR MaLR -101 411 206 5 1560 353 383 57 13 chr6 127861400 127861630 -21655407 + L1MD LINE L1 2375 2614 -3532 5 1560 557 175 87 0 chr6 127861718 127861821 -21655216 + B1_Mur3 SINE Alu 1 112 -37 5 1560 198 40 0 0 chr6 127862026 127862051 -21654986 - MIR SINE MIR -144 118 94 5 1560 205 362 55 18 chr6 127862242 127862405 -21654632 - MIRb SINE MIR -12 256 88 5 1560 384 315 0 0 chr6 127863533 127863641 -21653396 - PB1D10 SINE Alu -7 110 3 5 1560 754 157 11 0 chr6 127863905 127864083 -21652954 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1560 973 124 8 14 chr6 127864098 127864605 -21652432 + (CA)n Simple_repeat Simple_repeat 1 503 0 5 1560 289 250 37 24 chr6 127864750 127864832 -21652205 - MER110A LTR ERV1 -292 176 94 5 1560 222 118 0 0 chr6 127864961 127864995 -21652042 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 5 1560 315 262 135 10 chr6 127865049 127865153 -21651884 - PB1D7 SINE Alu -1 119 3 5 1560 347 66 371 0 chr6 127865159 127865264 -21651773 - B2_Mm2 SINE B2 -5 190 47 5 1560 1206 108 11 0 chr6 127865311 127865487 -21651550 - B2_Mm1t SINE B2 -14 179 2 5 1560 1952 149 15 59 chr6 127866267 127866658 -21650379 - ORR1D1 LTR MaLR 0 374 1 5 1560 248 130 22 0 chr6 127866687 127866733 -21650304 + (TATG)n Simple_repeat Simple_repeat 1 47 0 5 1560 352 278 0 20 chr6 127867425 127867524 -21649513 + B4A SINE B4 5 101 -191 5 1560 288 0 0 0 chr6 127867677 127867709 -21649328 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1560 741 147 0 0 chr6 127867709 127867879 -21649158 + (GA)n Simple_repeat Simple_repeat 1 170 0 5 1560 224 315 52 35 chr6 127868161 127868276 -21648761 + MIR SINE MIR 28 144 -64 5 1560 312 314 0 0 chr6 127868279 127868365 -21648672 + CT-rich Low_complexity Low_complexity 3 88 0 5 1560 467 307 46 63 chr6 127868945 127869230 -21647807 + B4 SINE B4 2 281 -11 5 1560 337 39 19 19 chr6 127869254 127869306 -21647731 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1560 362 85 17 0 chr6 127870073 127870132 -21646905 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1560 204 258 186 0 chr6 127870957 127871054 -21645983 - MER5B DNA MER1_type -33 145 31 6 1560 195 100 0 0 chr6 127871428 127871458 -21645579 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1560 230 314 32 40 chr6 127871584 127871710 -21645327 - MIR3 SINE MIR -39 169 45 6 1560 202 338 80 29 chr6 127872270 127872407 -21644630 + MIRc SINE MIR 47 190 -78 6 1560 1153 67 0 27 chr6 127874026 127874209 -21642828 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 6 1560 800 128 0 8 chr6 127874209 127874343 -21642694 + (TTC)n Simple_repeat Simple_repeat 2 134 0 6 1560 360 0 0 0 chr6 127875262 127875302 -21641735 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1560 572 325 76 24 chr6 127875314 127875563 -21641474 - MER2 DNA MER2_type -64 281 20 6 1560 276 150 17 0 chr6 127876323 127876383 -21640654 - MER88 LTR ERVL -151 313 253 6 1560 530 280 13 13 chr6 127876427 127876579 -21640458 - MER88 LTR ERVL -290 174 23 6 1560 254 207 17 17 chr6 127876646 127876705 -21640332 - MIR SINE MIR -61 147 89 6 1560 216 0 0 0 chr6 127878072 127878096 -21638941 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1560 988 135 11 11 chr6 127878463 127878643 -21638394 + CT-rich Low_complexity Low_complexity 1 180 0 6 1560 393 75 0 0 chr6 127879441 127879494 -21637543 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1560 435 38 0 0 chr6 127879911 127879964 -21637073 + (GGGA)n Simple_repeat Simple_repeat 2 54 0 6 1560 678 35 0 0 chr6 127881743 127881828 -21635209 + (TTGG)n Simple_repeat Simple_repeat 2 86 0 6 1560 276 310 0 12 chr6 127883677 127883762 -21633275 + B4A SINE B4 1 84 -208 6 1560 271 287 229 0 chr6 127883838 127883995 -21633042 - RMER15 LTR ERVL -87 488 296 6 1560 459 341 52 24 chr6 127884355 127884568 -21632469 - MER20 DNA MER1_type 0 219 1 6 1560 182 255 64 0 chr6 127887781 127887828 -21629209 + L2b LINE L2 3113 3162 -213 6 1560 188 287 103 31 chr6 127890235 127890332 -21626705 - MIRb SINE MIR -48 220 117 6 1560 1086 147 3 4 chr6 127890338 127892154 -21624883 + (CA)n Simple_repeat Simple_repeat 1 1815 0 6 1560 197 247 127 25 chr6 127894494 127894573 -21622464 + MIR SINE MIR 60 146 -62 6 1560 258 325 139 9 chr6 127894684 127894799 -21622238 - MIRc SINE MIR -26 242 113 6 1560 234 0 0 0 chr6 127896076 127896102 -21620935 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1560 333 0 0 0 chr6 127896102 127896138 -21620899 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1560 232 262 35 55 chr6 127896251 127896351 -21620686 + MIRc SINE MIR 77 169 -39 6 1560 210 284 168 10 chr6 127897039 127897188 -21619849 - MIRb SINE MIR -100 168 2 6 1560 312 158 0 0 chr6 127898305 127898362 -21618675 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1560 180 319 0 42 chr6 127899609 127899681 -21617356 + MER5A DNA MER1_type 7 75 -114 6 1560 219 333 20 50 chr6 127902229 127902330 -21614707 - MIRb SINE MIR -58 210 113 6 1560 191 286 84 14 chr6 127903287 127903358 -21613679 - MER5A DNA MER1_type -111 78 3 6 1560 438 253 0 0 chr6 127904342 127904429 -21612608 + B1F SINE Alu 32 118 -31 6 1560 1218 97 0 0 chr6 127904445 127904620 -21612417 + (GGGGA)n Simple_repeat Simple_repeat 4 178 0 6 1560 554 289 13 20 chr6 127904629 127904781 -21612256 + RSINE1 SINE B4 14 164 -1 6 1560 446 0 19 0 chr6 127904781 127904835 -21612202 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1560 198 0 0 0 chr6 127904835 127904857 -21612180 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1560 705 199 36 7 chr6 127904898 127905035 -21612002 + B1_Mur1 SINE Alu 2 142 -7 6 1560 464 319 19 19 chr6 127905077 127905237 -21611800 + RSINE1 SINE B4 2 161 -4 6 1560 761 325 71 24 chr6 127906474 127906811 -21610226 - ORR1E LTR MaLR -6 353 1 6 1560 212 86 29 0 chr6 127906853 127906888 -21610149 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 6 1560 429 222 12 12 chr6 127906888 127906970 -21610067 - ID4 SINE ID 0 83 2 6 1560 1332 67 0 0 chr6 127907776 127907956 -21609081 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1560 1107 170 74 15 chr6 127908146 127908349 -21608688 - B3 SINE B2 -1 215 1 6 1560 1055 245 0 5 chr6 127908592 127908809 -21608228 - B3 SINE B2 0 216 1 6 1560 1459 212 76 3 chr6 127909168 127909485 -21607552 + MTEb LTR MaLR 6 345 -34 6 1560 207 0 0 0 chr6 127915593 127915616 -21601421 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1560 964 272 97 52 chr6 127917842 127918191 -21598846 + MTEa LTR MaLR 1 365 -14 6 1560 203 287 184 24 chr6 127918415 127918540 -21598497 - L2a LINE L2 0 3426 3282 6 1560 977 259 155 66 chr6 127918810 127919235 -21597802 + MT2A LTR ERVL 1 463 -70 6 1560 736 124 9 0 chr6 127919239 127919352 -21597685 + B1_Mur4 SINE Alu 6 119 -31 6 1560 190 359 124 28 chr6 127919651 127920038 -21596999 - L2a LINE L2 -342 3077 2654 6 1560 273 29 0 0 chr6 127920127 127920161 -21596876 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1560 23 0 0 0 chr6 127920757 127920780 -21596257 + GC_rich Low_complexity Low_complexity 1 23 0 6 1560 398 318 106 58 chr6 127921543 127921750 -21595287 + MER20 DNA MER1_type 3 219 0 6 1560 243 0 0 0 chr6 127923057 127923084 -21593953 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1560 213 132 0 0 chr6 127923179 127923217 -21593820 + (TGGG)n Simple_repeat Simple_repeat 1 38 0 6 1560 213 39 0 0 chr6 127925865 127925891 -21591146 + (G)n Simple_repeat Simple_repeat 1 26 0 6 1561 232 232 71 14 chr6 127928361 127928431 -21588606 - MIRc SINE MIR -77 191 118 6 1561 313 263 86 17 chr6 127928790 127928906 -21588131 + MIRb SINE MIR 145 268 0 6 1561 180 0 0 0 chr6 127929305 127929325 -21587712 + (CGGG)n Simple_repeat Simple_repeat 2 21 0 6 1561 189 195 0 0 chr6 127929885 127929926 -21587111 + GA-rich Low_complexity Low_complexity 3 43 0 6 1561 384 253 0 32 chr6 127931843 127931937 -21585100 + PB1D7 SINE Alu 4 94 -26 6 1561 291 28 0 0 chr6 127931941 127931977 -21585060 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1561 197 298 145 0 chr6 127933817 127933941 -21583096 + L2b LINE L2 2662 2803 -616 6 1561 329 340 117 24 chr6 127934104 127934309 -21582728 + L2b LINE L2 3138 3361 -14 6 1561 298 262 12 36 chr6 127934564 127934647 -21582390 + MIR SINE MIR 77 157 -105 6 1561 574 244 15 8 chr6 127940287 127940419 -21576618 - B4A SINE B4 0 292 160 6 1561 549 236 0 0 chr6 127941152 127941258 -21575779 + PB1D10 SINE Alu 6 111 -6 6 1561 231 88 0 0 chr6 127942640 127942674 -21574363 + (CTTG)n Simple_repeat Simple_repeat 1 34 0 6 1561 274 295 132 9 chr6 127944618 127944724 -21572313 - PB1 SINE Alu -2 125 7 6 1561 1948 51 0 0 chr6 127946796 127947031 -21570006 - L1Md_A LINE L1 -2 6580 6346 6 1561 1149 138 108 0 chr6 127947069 127947264 -21569773 - B3 SINE B2 0 216 1 6 1561 1298 96 26 11 chr6 127947272 127947461 -21569576 - B2_Mm2 SINE B2 -2 193 2 6 1561 969 192 60 47 chr6 127947551 127947786 -21569251 - MER44A DNA MER2_type -11 328 91 6 1561 577 154 48 0 chr6 127947802 127947895 -21569142 + B1_Mur1 SINE Alu 41 138 -11 6 1561 270 0 0 0 chr6 127947895 127947925 -21569112 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1561 591 275 273 42 chr6 127948004 127948312 -21568725 + MTE2b LTR MaLR 1 379 0 6 1561 207 0 0 0 chr6 127949156 127949179 -21567858 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1561 325 420 5 40 chr6 127950108 127950309 -21566728 + MIRb SINE MIR 51 244 -24 6 1561 411 21 0 0 chr6 127951063 127951111 -21565926 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1561 270 309 0 19 chr6 127951190 127951212 -21565825 - ID4_ SINE ID -53 99 46 6 1561 258 308 15 0 chr6 127951212 127951277 -21565760 - ID SINE ID -142 82 17 6 1561 270 309 0 19 chr6 127951277 127951293 -21565744 - ID4_ SINE ID -53 45 1 6 1561 185 205 0 0 chr6 127954732 127954771 -21562266 - MIRb SINE MIR -11 257 219 6 1561 311 360 42 28 chr6 127955388 127955531 -21561506 + L1M5 LINE L1 5595 5739 -501 6 1561 250 57 0 0 chr6 127955655 127955690 -21561347 - MT2A LTR ERVL -1 532 498 6 1561 369 43 0 0 chr6 127955690 127955737 -21561300 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1561 1123 190 82 112 chr6 127955746 127956121 -21560916 - MT2A LTR ERVL -118 483 4 6 1561 449 265 70 82 chr6 127956144 127956489 -21560548 + MTEa LTR MaLR 25 375 -4 6 1561 23 0 0 0 chr6 127956958 127956981 -21560056 + AT_rich Low_complexity Low_complexity 1 23 0 6 1561 180 0 0 0 chr6 127957232 127957252 -21559785 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6 1561 228 246 122 14 chr6 127958078 127958152 -21558885 - MIR3 SINE MIR -41 167 86 6 1561 24 0 0 0 chr6 127958282 127958306 -21558731 + AT_rich Low_complexity Low_complexity 1 24 0 6 1561 854 180 6 0 chr6 127958932 127959110 -21557927 + GA-rich Low_complexity Low_complexity 2 180 0 6 1561 414 134 0 0 chr6 127961340 127961407 -21555630 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1561 331 359 49 19 chr6 127962650 127962812 -21554225 + MER5B DNA MER1_type 9 175 -3 6 1561 922 171 7 0 chr6 127964610 127964900 -21552137 + (TGGA)n Simple_repeat Simple_repeat 1 292 0 6 1561 219 342 32 49 chr6 127966610 127966733 -21550304 - MIRb SINE MIR -37 231 111 6 1561 716 210 74 42 chr6 127966740 127966929 -21550108 + B3A SINE B2 2 196 -2 6 1561 285 151 0 0 chr6 127967019 127967072 -21549965 + ORR1D2 LTR MaLR 74 126 -244 6 1561 3836 10 0 0 chr6 127967698 127968182 -21548855 + L1_Mm LINE L1 1650 2133 -3750 6 1561 1009 238 108 27 chr6 127969196 127969546 -21547491 + MTD LTR MaLR 1 387 -13 6 1561 604 294 0 14 chr6 127970101 127970249 -21546788 + RSINE1 SINE B4 6 151 -14 6 1561 501 17 0 0 chr6 127970771 127970829 -21546208 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 1561 245 339 79 39 chr6 127971122 127971300 -21545737 - MIR3 SINE MIR -4 204 20 7 1561 210 191 0 0 chr6 127971655 127971697 -21545340 + G-rich Low_complexity Low_complexity 2 43 0 7 1561 1188 158 14 0 chr6 127972817 127973026 -21544011 - URR1A DNA MER1_type 0 226 15 7 1561 315 0 0 0 chr6 127974278 127974313 -21542724 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1561 472 224 94 29 chr6 127974460 127974598 -21542439 + MLT1A0 LTR MaLR 10 156 -209 7 1561 198 403 32 0 chr6 127976024 127976148 -21540889 + MIRb SINE MIR 24 151 -117 7 1561 336 285 43 183 chr6 127976361 127976683 -21540354 + L1M5 LINE L1 4427 4703 -1443 7 1561 244 188 29 0 chr6 127977128 127977197 -21539840 + A-rich Low_complexity Low_complexity 6 76 0 7 1561 459 0 0 0 chr6 127977654 127977705 -21539332 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 7 1561 323 262 0 0 chr6 127977705 127977766 -21539271 - ID4_ SINE ID -5 78 18 7 1561 806 312 15 8 chr6 127977832 127978100 -21538937 + B4A SINE B4 9 278 -14 7 1561 219 69 0 0 chr6 127978936 127978965 -21538072 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1561 216 0 0 0 chr6 127979887 127979911 -21537126 + (TCC)n Simple_repeat Simple_repeat 3 26 0 7 1561 192 97 0 0 chr6 127980877 127980908 -21536129 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 7 1561 612 0 0 0 chr6 127985523 127985591 -21531446 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1561 204 135 0 0 chr6 127986566 127986603 -21530434 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1561 287 225 71 59 chr6 127988934 127989019 -21528018 + B1F1 SINE Alu 14 99 -50 7 1561 220 91 45 0 chr6 127989022 127989066 -21527971 + (GGGA)n Simple_repeat Simple_repeat 1 46 0 7 1561 414 0 0 0 chr6 127989342 127989388 -21527649 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1561 306 0 0 0 chr6 127989388 127989421 -21527616 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1561 820 186 7 7 chr6 127991421 127991567 -21525470 + ID_B1 SINE B4 70 215 -9 7 1561 199 303 89 11 chr6 127991933 127992023 -21525014 + L2b LINE L2 3244 3340 -35 7 1561 297 0 0 0 chr6 127993732 127993765 -21523272 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1561 312 70 0 0 chr6 127994494 127994537 -21522500 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 7 1561 222 265 418 20 chr6 127995009 127995149 -21521888 - MIRc SINE MIR -39 229 34 7 1561 21 0 0 0 chr6 127995759 127995780 -21521257 + GC_rich Low_complexity Low_complexity 1 21 0 7 1561 197 370 24 32 chr6 127996075 127996198 -21520839 + L2b LINE L2 3023 3144 -231 7 1561 188 309 0 18 chr6 127996323 127996379 -21520658 + L2b LINE L2 3272 3326 -49 7 1561 405 0 0 0 chr6 127996379 127996424 -21520613 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1561 529 312 108 79 chr6 127998667 127998945 -21518092 + ORR1E LTR MaLR 8 293 -66 7 1561 27 49 0 0 chr6 127998946 127998987 -21518050 + AT_rich Low_complexity Low_complexity 1 41 0 7 1561 345 47 0 0 chr6 127999608 127999651 -21517386 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 7 1561 275 244 191 20 chr6 128000326 128000477 -21516560 + MIRc SINE MIR 2 183 -25 1 1561 183 325 201 13 chr6 128001196 128001505 -21515532 + L2c LINE L2 2978 3344 -43 2 1561 260 290 0 0 chr6 128001892 128001954 -21515083 + Charlie9 DNA MER1_type 1 62 -2695 3 1561 742 214 32 25 chr6 128002104 128002262 -21514775 + RSINE1 SINE B4 2 160 -5 4 1561 34 0 0 0 chr6 128002292 128002326 -21514711 + AT_rich Low_complexity Low_complexity 1 34 0 5 1561 399 21 0 0 chr6 128002351 128002399 -21514638 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1561 360 0 0 0 chr6 128002399 128002438 -21514599 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1561 277 289 16 32 chr6 128004431 128004472 -21512565 - BC1_Mm scRNA scRNA -28 124 2 8 1561 309 274 24 0 chr6 128004472 128004556 -21512481 - ID SINE ID -137 87 2 9 1561 23 0 0 0 chr6 128004636 128004659 -21512378 + AT_rich Low_complexity Low_complexity 1 23 0 1 1561 195 129 0 0 chr6 128006843 128006874 -21510163 + (CAG)n Simple_repeat Simple_repeat 2 32 0 1 1561 327 49 0 0 chr6 128006874 128006915 -21510122 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1561 1061 225 5 9 chr6 128007080 128007291 -21509746 - B3 SINE B2 -2 214 5 1 1561 688 185 81 7 chr6 128007344 128007480 -21509557 - B1_Mur2 SINE Alu -3 146 1 1 1561 353 275 0 52 chr6 128007699 128007795 -21509242 - B3 SINE B2 -21 195 105 1 1561 1020 258 92 37 chr6 128009406 128009732 -21507305 + MER2 DNA MER2_type 1 344 -1 1 1561 229 301 137 21 chr6 128010051 128010241 -21506796 - L2a LINE L2 -67 3359 3148 1 1561 264 351 69 49 chr6 128010973 128011177 -21505860 - MIRb SINE MIR -5 257 33 1 1561 311 341 69 8 chr6 128011716 128011846 -21505191 + RMER15 LTR ERVL 422 559 -16 1 1561 262 307 65 48 chr6 128011765 128012003 -21505034 + MTEb LTR MaLR 149 396 -12 2 1561 273 57 0 0 chr6 128012039 128012074 -21504963 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2 1561 231 222 0 0 chr6 128012077 128012122 -21504915 + CT-rich Low_complexity Low_complexity 2 46 0 2 1561 444 202 232 37 chr6 128013330 128013494 -21503543 - B3A SINE B2 -1 197 2 2 1561 377 343 97 37 chr6 128014192 128014781 -21502256 + L1ME3A LINE L1 5394 6021 -141 2 1561 252 263 79 20 chr6 128015053 128015154 -21501883 - MamRep434 DNA TcMar -1 425 319 2 1561 218 287 50 50 chr6 128016416 128016537 -21500500 - MIRb SINE MIR -127 141 21 2 1561 367 267 102 8 chr6 128018885 128019029 -21498008 + L1MB8 LINE L1 5165 5327 -819 2 1561 1120 309 92 36 chr6 128019142 128019732 -21497305 + L1MB8 LINE L1 5432 6054 -124 2 1561 460 301 78 55 chr6 128019845 128020116 -21496921 - MLT1B LTR MaLR -111 279 3 2 1561 223 274 107 23 chr6 128020139 128020270 -21496767 - MIR3 SINE MIR -1 207 66 2 1561 222 336 134 18 chr6 128020579 128020691 -21496346 - L2c LINE L2 -239 3148 3024 3 1561 180 182 0 0 chr6 128021167 128021211 -21495826 + T-rich Low_complexity Low_complexity 1 44 0 3 1561 336 295 246 5 chr6 128021585 128021776 -21495261 - MIR SINE MIR -17 245 9 3 1561 33 0 0 0 chr6 128022344 128022377 -21494660 + AT_rich Low_complexity Low_complexity 1 33 0 3 1561 271 301 7 123 chr6 128023219 128023374 -21493663 + MT2B LTR ERVL 120 256 -345 3 1561 644 195 85 8 chr6 128023278 128023407 -21493630 + B1_Mur4 SINE Alu 10 148 -2 3 1561 280 165 0 52 chr6 128023416 128023512 -21493525 + A-rich Low_complexity Low_complexity 3 93 0 3 1561 246 247 178 60 chr6 128023949 128024086 -21492951 + MER102c DNA MER1_type 124 286 -45 3 1561 225 338 13 66 chr6 128024218 128024370 -21492667 - YREP_Mm Unknown Unknown -1488 324 181 3 1561 451 283 9 0 chr6 128024260 128024373 -21492664 + ID_B1 SINE B4 110 223 -1 3 1561 254 125 0 20 chr6 128025896 128025945 -21491092 + (GGA)n Simple_repeat Simple_repeat 1 48 0 4 1561 281 316 0 39 chr6 128027781 128027912 -21489125 - MER5A1 DNA MER1_type -24 142 17 4 1561 322 236 41 41 chr6 128031036 128031133 -21485904 - L1MEg LINE L1 -4147 1937 1841 4 1561 190 231 94 19 chr6 128031143 128031196 -21485841 - MIR SINE MIR -114 154 95 4 1561 219 36 0 0 chr6 128031198 128031226 -21485811 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 4 1561 315 0 0 0 chr6 128031700 128031735 -21485302 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1561 534 270 172 33 chr6 128032614 128032917 -21484120 - MLT1C LTR MaLR -49 418 74 4 1561 1369 241 57 14 chr6 128033010 128033360 -21483677 + ORR1D2 LTR MaLR 6 370 0 4 1561 409 345 70 10 chr6 128033527 128033726 -21483311 + L1MC4a LINE L1 6584 6794 -1201 4 1561 1456 291 118 67 chr6 128033727 128034685 -21482352 + L1MC4a LINE L1 6744 7750 -132 4 1561 3344 225 97 24 chr6 128034701 128035607 -21481430 + RCHARR1 DNA MER1_type 3 974 0 4 1561 277 93 0 23 chr6 128035918 128035962 -21481075 - AmnSINE1 SINE SINE -3 572 530 5 1561 477 90 0 0 chr6 128037799 128037866 -21479171 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 1561 22 0 0 0 chr6 128038751 128038773 -21478264 + AT_rich Low_complexity Low_complexity 1 22 0 5 1561 242 352 10 19 chr6 128039493 128039626 -21477411 - MIRc SINE MIR -133 143 14 5 1561 288 0 0 0 chr6 128039877 128039909 -21477128 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1561 189 0 0 0 chr6 128040015 128040036 -21477001 + (GCTG)n Simple_repeat Simple_repeat 4 24 0 5 1561 195 42 0 0 chr6 128043094 128043118 -21473919 + (TCTCC)n Simple_repeat Simple_repeat 1 24 0 5 1561 1305 305 73 30 chr6 128044188 128044762 -21472275 + L1MB5 LINE L1 5401 5999 -175 5 1561 460 231 204 5 chr6 128044962 128045092 -21471945 + ID_B1 SINE B4 80 224 -68 5 1561 481 278 64 23 chr6 128046072 128046245 -21470792 - MIRb SINE MIR 0 268 89 5 1561 502 350 0 0 chr6 128047080 128047237 -21469800 + RSINE1 SINE B4 9 165 0 6 1561 362 284 29 19 chr6 128047262 128047366 -21469671 + B1F SINE Alu 43 147 -2 6 1561 209 369 157 5 chr6 128047389 128047599 -21469438 - MIR SINE MIR -6 256 15 6 1561 994 297 50 48 chr6 128047854 128048313 -21468724 + L1MB3 LINE L1 5716 6175 -8 6 1561 237 359 48 32 chr6 128048709 128048896 -21468141 - MIR SINE MIR 0 262 73 6 1561 342 289 21 0 chr6 128048958 128049055 -21467982 - PB1 SINE Alu -7 120 22 6 1561 1170 168 38 24 chr6 128049986 128050199 -21466838 + B3 SINE B2 1 216 0 6 1561 449 242 30 0 chr6 128050468 128050567 -21466470 - B1F SINE Alu -31 118 17 6 1561 314 335 71 10 chr6 128050644 128050840 -21466197 - L1MA6 LINE L1 -51 6249 6042 6 1561 282 56 0 0 chr6 128050853 128050889 -21466148 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1561 336 24 0 0 chr6 128051036 128051077 -21465960 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1561 243 0 0 0 chr6 128051077 128051103 -21465934 + (TA)n Simple_repeat Simple_repeat 1 27 0 7 1561 233 280 147 0 chr6 128051103 128051178 -21465859 - L1M5 LINE L1 -461 5663 5578 7 1561 743 219 43 90 chr6 128051522 128051733 -21465304 - B3 SINE B2 -9 207 7 7 1561 344 261 33 75 chr6 128051759 128051879 -21465158 - PB1 SINE Alu -2 125 11 7 1561 313 293 13 113 chr6 128051888 128052038 -21464999 - ID_B1 SINE B4 0 224 90 7 1561 574 264 16 0 chr6 128051910 128052039 -21464998 - B1_Mur4 SINE Alu -11 139 9 7 1561 206 339 75 35 chr6 128052102 128052276 -21464761 + MIR SINE MIR 79 259 -3 7 1561 456 184 86 19 chr6 128053505 128053610 -21463427 + B1F2 SINE Alu 31 142 -7 7 1561 442 112 10 39 chr6 128053615 128053717 -21463320 + (TAGA)n Simple_repeat Simple_repeat 3 101 0 7 1561 544 229 7 54 chr6 128053881 128054029 -21463008 + ID_B1 SINE B4 84 224 0 8 1561 216 294 94 16 chr6 128055144 128055272 -21461765 - MIR3 SINE MIR -15 193 56 8 1561 203 271 177 51 chr6 128056535 128056710 -21460327 - MIR SINE MIR -26 242 46 8 1561 1479 144 0 5 chr6 128057081 128057304 -21459733 - URR1A DNA MER1_type 0 226 5 8 1562 279 79 0 0 chr6 128057446 128057484 -21459553 + (TCCCC)n Simple_repeat Simple_repeat 4 41 0 8 1562 784 252 39 5 chr6 128058040 128058243 -21458794 - B3 SINE B2 -6 210 1 8 1562 182 37 0 36 chr6 128059164 128059192 -21457845 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8 1562 692 104 186 1 chr6 128059196 128059316 -21457721 - B1_Mur3 SINE Alu -1 149 10 8 1562 3894 117 83 77 chr6 128059316 128060066 -21456971 - RMER6A LTR ERVK -2 754 1 8 1562 837 250 10 5 chr6 128060157 128060358 -21456679 + B3 SINE B2 2 203 -13 8 1562 22 56 0 0 chr6 128060384 128060420 -21456617 + AT_rich Low_complexity Low_complexity 1 36 0 9 1562 264 311 0 13 chr6 128060425 128060500 -21456537 + ID_B1 SINE B4 145 218 -6 9 1562 347 266 10 69 chr6 128060532 128060633 -21456404 + PB1 SINE Alu 33 127 0 9 1562 482 278 59 54 chr6 128060845 128061066 -21455971 + L1MB8 LINE L1 5883 6104 -74 9 1562 224 30 30 0 chr6 128061069 128061102 -21455935 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 9 1562 182 323 31 31 chr6 128061287 128061351 -21455686 - L2b LINE L2 -2 3373 3310 9 1562 1331 259 20 3 chr6 128061351 128061653 -21455384 + MER58B DNA MER1_type 19 325 -16 9 1562 232 246 0 50 chr6 128062302 128062362 -21454675 + ORR1E LTR MaLR 6 62 -297 9 1562 477 0 0 0 chr6 128062702 128062755 -21454282 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1562 233 265 44 0 chr6 128062897 128062965 -21454072 + HAL1 LINE L1 798 868 -1639 9 1562 396 135 0 0 chr6 128063029 128063103 -21453934 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1562 327 274 24 8 chr6 128063132 128063257 -21453780 + HAL1 LINE L1 959 1085 -1422 9 1562 291 281 47 42 chr6 128063402 128063579 -21453458 + B4 SINE B4 16 190 -102 1 1562 364 233 25 49 chr6 128063795 128063917 -21453120 + HAL1 LINE L1 1245 1363 -1144 9 1562 426 69 0 0 chr6 128064043 128064101 -21452936 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1562 387 0 0 0 chr6 128064589 128064632 -21452405 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1562 395 234 13 0 chr6 128064634 128064711 -21452326 - B4A SINE B4 -23 269 192 1 1562 382 230 190 0 chr6 128064878 128064978 -21452059 + PB1D7 SINE Alu 2 120 0 1 1562 324 48 0 0 chr6 128065584 128065626 -21451411 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1562 568 301 0 15 chr6 128065629 128065764 -21451273 - RSINE1 SINE B4 -29 136 4 1 1562 315 0 0 0 chr6 128066230 128066265 -21450772 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1562 264 30 0 0 chr6 128066265 128066297 -21450740 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1562 191 298 18 0 chr6 128067266 128067323 -21449714 + MIRm SINE MIR 125 182 -94 1 1562 190 321 49 84 chr6 128067376 128067441 -21449596 + L2a LINE L2 2809 2871 -548 1 1562 537 155 133 10 chr6 128067441 128067539 -21449498 + PB1D9 SINE Alu 2 111 -9 1 1562 190 321 49 84 chr6 128067539 128067616 -21449421 + L2a LINE L2 2872 2946 -473 1 1562 253 266 166 4 chr6 128067676 128067844 -21449193 + L2a LINE L2 3179 3424 -2 1 1562 1698 21 0 0 chr6 128068157 128068349 -21448688 + B2_Mm1a SINE B2 2 193 0 1 1562 296 305 169 0 chr6 128068653 128068771 -21448266 + MER2 DNA MER2_type 55 192 -153 1 1562 301 282 0 0 chr6 128069177 128069255 -21447782 + PB1D7 SINE Alu 42 119 -1 1 1562 416 253 0 0 chr6 128069277 128069360 -21447677 + ID4 SINE ID 1 83 0 1 1562 822 202 0 0 chr6 128069381 128069554 -21447483 + GA-rich Low_complexity Low_complexity 2 174 0 1 1562 281 287 28 183 chr6 128071649 128071696 -21445341 + B4A SINE B4 47 200 -92 1 1562 497 261 12 112 chr6 128071696 128071856 -21445181 + B1F1 SINE Alu 1 144 -5 1 1562 285 250 0 0 chr6 128071893 128071957 -21445080 + ID4 SINE ID 4 67 -16 1 1562 202 340 75 0 chr6 128072045 128072098 -21444939 - L2c LINE L2 -2 3385 3329 1 1562 412 314 119 53 chr6 128072350 128072670 -21444367 + L1MEc LINE L1 151 491 -5909 1 1562 917 295 105 23 chr6 128072699 128073272 -21443765 + L1MEc LINE L1 559 1178 -5222 1 1562 310 284 72 18 chr6 128073666 128073777 -21443260 + PB1D10 SINE Alu 1 117 0 1 1562 297 208 0 0 chr6 128073849 128073926 -21443111 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1562 288 343 20 0 chr6 128074053 128074152 -21442885 + PB1D10 SINE Alu 7 107 -10 1 1562 261 282 27 27 chr6 128075420 128075493 -21441544 + ID4_ SINE ID 8 80 -3 1 1562 279 71 0 0 chr6 128075830 128075872 -21441165 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1562 288 102 0 0 chr6 128075872 128075921 -21441116 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1562 808 143 28 35 chr6 128075988 128076133 -21440904 - B1_Mur2 SINE Alu 0 149 6 1 1562 369 250 106 57 chr6 128076141 128076264 -21440773 + L1MA5 LINE L1 6138 6266 -34 1 1562 300 283 0 0 chr6 128076294 128076354 -21440683 + tRNA-Ala-GCA tRNA tRNA 2 61 -14 1 1562 232 329 73 0 chr6 128076354 128076369 -21440668 + B4 SINE B4 24 88 -204 1 1562 785 161 4 0 chr6 128076380 128076667 -21440370 + (TG)n Simple_repeat Simple_repeat 1 288 0 1 1562 3523 20 5 0 chr6 128080036 128080430 -21436607 + MTA_Mm LTR MaLR 1 396 0 1 1562 622 217 35 21 chr6 128081089 128081237 -21435800 + RSINE1 SINE B4 4 154 -11 1 1562 279 79 0 0 chr6 128081237 128081275 -21435762 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1562 210 71 0 0 chr6 128081419 128081447 -21435590 + (GGA)n Simple_repeat Simple_repeat 3 30 0 1 1562 1057 112 12 6 chr6 128082085 128082428 -21434609 + (CATA)n Simple_repeat Simple_repeat 1 344 0 1 1562 302 276 91 38 chr6 128083245 128083329 -21433708 - L1MDa LINE L1 -5279 1354 1264 1 1562 592 255 27 7 chr6 128083329 128083475 -21433562 - B1_Mur1 SINE Alu 0 149 1 1 1562 302 276 91 38 chr6 128083475 128083522 -21433515 - L1MDa LINE L1 -5370 1263 1217 1 1562 680 193 0 0 chr6 128084970 128085079 -21431958 + B1_Mur1 SINE Alu 10 118 -31 1 1562 318 295 106 70 chr6 128085079 128085102 -21431935 + B4 SINE B4 115 222 -70 1 1562 437 290 65 0 chr6 128086110 128086217 -21430820 + B1F1 SINE Alu 20 133 -16 1 1562 338 241 63 27 chr6 128086247 128086358 -21430679 + B4A SINE B4 6 120 -172 1 1562 357 62 0 0 chr6 128086474 128086522 -21430515 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1562 418 304 111 33 chr6 128086778 128086958 -21430079 + MER117 DNA MER1_type 1 194 -3 1 1562 501 314 35 30 chr6 128087164 128087364 -21429673 + Tigger12c DNA MER2_type 533 733 -1 1 1562 487 78 51 17 chr6 128087605 128087723 -21429314 + (TG)n Simple_repeat Simple_repeat 2 123 0 1 1562 495 234 120 60 chr6 128087732 128087744 -21429293 - B3A SINE B2 -39 159 149 1 1562 1069 61 0 43 chr6 128087744 128087932 -21429105 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1562 495 234 120 60 chr6 128087932 128088069 -21428968 - B3A SINE B2 -50 148 1 1 1562 439 271 22 29 chr6 128088410 128088547 -21428490 + RSINE1 SINE B4 30 165 0 1 1562 258 132 0 0 chr6 128089012 128089065 -21427972 + (TTGG)n Simple_repeat Simple_repeat 4 56 0 1 1562 379 244 12 0 chr6 128089072 128089154 -21427883 - ID4 SINE ID 0 83 1 1 1562 619 221 13 40 chr6 128089781 128089932 -21427105 - ID_B1 SINE B4 0 224 78 1 1562 595 224 0 8 chr6 128089977 128090094 -21426943 + PB1D10 SINE Alu 2 117 0 1 1562 1147 108 0 7 chr6 128090099 128090378 -21426659 + (GAA)n Simple_repeat Simple_repeat 1 276 0 1 1562 238 317 83 42 chr6 128090842 128091010 -21426027 - MIRb SINE MIR 0 268 94 1 1562 393 22 0 0 chr6 128091172 128091218 -21425819 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1 1562 294 211 104 96 chr6 128091256 128091284 -21425753 + MT2B LTR ERVL 163 278 -323 1 1562 490 184 23 0 chr6 128091284 128091371 -21425666 + B1_Mur1 SINE Alu 34 122 -27 1 1562 315 0 0 0 chr6 128091373 128091408 -21425629 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1562 198 115 58 0 chr6 128091448 128091500 -21425537 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1562 285 294 0 0 chr6 128091511 128091579 -21425458 + B4A SINE B4 223 290 -2 1 1562 23 0 0 0 chr6 128091607 128091630 -21425407 + AT_rich Low_complexity Low_complexity 1 23 0 1 1562 223 186 0 23 chr6 128091630 128091674 -21425363 + GA-rich Low_complexity Low_complexity 3 45 0 1 1562 237 33 0 0 chr6 128092510 128092540 -21424497 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1562 23 86 0 0 chr6 128093595 128093653 -21423384 + GC_rich Low_complexity Low_complexity 1 58 0 1 1562 544 176 17 214 chr6 128094447 128094620 -21422417 - B1_Mur1 SINE Alu -8 141 3 1 1562 264 313 36 0 chr6 128095681 128095764 -21421273 + MER94 DNA AcHobo 49 134 0 1 1562 183 256 0 44 chr6 128096082 128096127 -21420910 - MIRc SINE MIR -113 155 113 1 1562 260 283 346 0 chr6 128096176 128096372 -21420665 + B4 SINE B4 1 262 -30 1 1562 279 0 0 0 chr6 128096394 128096425 -21420612 + (ATG)n Simple_repeat Simple_repeat 1 31 0 1 1562 296 243 14 28 chr6 128096467 128096539 -21420498 + ID4_ SINE ID 3 73 -10 1 1562 560 194 114 37 chr6 128096716 128096878 -21420159 - MER58A DNA MER1_type 0 224 46 1 1562 6611 64 2 1 chr6 128097621 128098491 -21418546 + L1_Mus1 LINE L1 5711 6566 -1 1 1562 937 223 71 0 chr6 128098546 128098743 -21418294 + B3 SINE B2 1 211 -5 1 1562 490 232 87 16 chr6 128098743 128098860 -21418177 + B1F2 SINE Alu 16 143 -6 1 1562 459 216 722 0 chr6 128098892 128099017 -21418020 + B3 SINE B2 1 216 0 1 1562 666 206 44 0 chr6 128099046 128099182 -21417855 + B1_Mur1 SINE Alu 1 142 -7 1 1562 349 248 48 29 chr6 128099401 128099505 -21417532 + PB1 SINE Alu 2 107 -20 1 1562 1527 43 0 0 chr6 128100039 128100223 -21416814 + L1_Mus1 LINE L1 6384 6567 0 1 1562 686 211 65 24 chr6 128100253 128100423 -21416614 + B2_Mm2 SINE B2 11 187 -8 1 1562 1156 76 14 0 chr6 128100432 128100576 -21416461 + B1_Mus2 SINE Alu 2 147 0 1 1562 205 138 0 0 chr6 128100588 128100617 -21416420 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1 1562 180 111 0 0 chr6 128100621 128100648 -21416389 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1562 180 0 0 0 chr6 128100747 128100767 -21416270 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1562 425 340 12 67 chr6 128100787 128100905 -21416132 + B3A SINE B2 38 145 -53 1 1562 468 0 0 0 chr6 128100905 128100957 -21416080 + (CATA)n Simple_repeat Simple_repeat 3 54 0 1 1562 425 340 12 67 chr6 128100957 128101002 -21416035 + B3A SINE B2 146 192 -6 1 1562 1806 244 72 26 chr6 128101012 128101891 -21415146 - Lx5 LINE L1 0 7050 6230 1 1562 252 0 0 0 chr6 128102181 128102209 -21414828 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1562 267 274 10 59 chr6 128102215 128102316 -21414721 - MTC LTR MaLR -73 348 253 1 1562 600 305 104 48 chr6 128102351 128102709 -21414328 + L1MEf LINE L1 543 921 -5279 1 1562 419 261 63 0 chr6 128102709 128102820 -21414217 + PB1D9 SINE Alu 3 120 0 1 1562 600 305 104 48 chr6 128102820 128103011 -21414026 + L1MEf LINE L1 922 1123 -5077 1 1562 315 0 0 0 chr6 128103011 128103046 -21413991 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 1 1562 399 225 79 0 chr6 128103048 128103137 -21413900 - PB1D10 SINE Alu -17 100 5 1 1562 600 305 104 48 chr6 128103137 128103151 -21413886 + L1MEf LINE L1 1124 1140 -5060 1 1562 213 39 0 0 chr6 128103177 128103203 -21413834 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1562 380 256 12 0 chr6 128104006 128104088 -21412949 + ID_B1 SINE B4 112 194 -30 1 1562 316 252 110 18 chr6 128104088 128104115 -21412922 + B1F SINE Alu 31 149 0 1 1562 201 263 0 0 chr6 128104116 128104173 -21412864 + A-rich Low_complexity Low_complexity 1 57 0 1 1562 299 325 204 30 chr6 128104173 128104376 -21412661 - MLT1E1A LTR MaLR -51 629 270 2 1562 1777 194 62 23 chr6 128104513 128104866 -21412171 - MTD LTR MaLR -10 409 43 2 1562 441 0 0 0 chr6 128104867 128104916 -21412121 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1562 220 270 96 33 chr6 128104929 128105020 -21412017 + B1F1 SINE Alu 2 120 0 2 1562 319 324 96 0 chr6 128105961 128106097 -21410940 + B1F1 SINE Alu 1 149 0 2 1562 779 282 68 21 chr6 128106101 128106380 -21410657 + B4A SINE B4 1 292 0 2 1562 237 328 0 0 chr6 128106390 128106451 -21410586 + polypurine Low_complexity Low_complexity 4 64 0 2 1562 269 269 108 0 chr6 128106459 128106552 -21410485 + ID_B1 SINE B4 84 186 -38 2 1562 462 270 9 0 chr6 128106614 128106729 -21410308 - PB1D10 SINE Alu 0 117 2 2 1562 27 0 0 0 chr6 128107294 128107321 -21409716 + AT_rich Low_complexity Low_complexity 1 27 0 2 1562 569 220 28 0 chr6 128107379 128107488 -21409549 + ID_B1 SINE B4 103 214 -10 2 1562 954 281 84 75 chr6 128107562 128108028 -21409009 + Lx8 LINE L1 7000 7469 -4 2 1562 357 284 0 43 chr6 128108088 128108180 -21408857 + PB1D10 SINE Alu 16 103 -14 2 1562 331 323 129 26 chr6 128108782 128108808 -21408229 - MT2A LTR ERVL -2 531 505 2 1562 255 125 0 0 chr6 128108808 128108848 -21408189 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1562 331 323 129 26 chr6 128108848 128109015 -21408022 - MT2A LTR ERVL -29 504 318 2 1562 659 269 42 56 chr6 128109076 128109289 -21407748 - MTEa LTR MaLR -169 210 1 2 1562 198 0 0 0 chr6 128109572 128109594 -21407443 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1562 650 231 92 0 chr6 128109603 128109733 -21407304 - RSINE1 SINE B4 -21 144 3 2 1562 788 242 83 30 chr6 128109733 128109951 -21407086 - B4A SINE B4 -62 230 1 2 1562 444 37 0 0 chr6 128110168 128110222 -21406815 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 2 1562 222 156 22 0 chr6 128110223 128110268 -21406769 + CT-rich Low_complexity Low_complexity 4 49 0 2 1562 464 252 20 0 chr6 128110296 128110395 -21406642 + ID_B1 SINE B4 112 212 -12 2 1562 341 261 68 51 chr6 128110395 128110413 -21406624 + B1F SINE Alu 31 149 0 2 1562 300 203 14 55 chr6 128110584 128110657 -21406380 + ID4 SINE ID 1 70 -13 2 1562 180 0 0 0 chr6 128111182 128111202 -21405835 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1562 204 200 0 0 chr6 128111559 128111604 -21405433 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1562 208 130 0 53 chr6 128111681 128111738 -21405299 + (GTTTG)n Simple_repeat Simple_repeat 1 54 0 2 1562 490 256 85 28 chr6 128112007 128112148 -21404889 + B1F1 SINE Alu 1 149 0 2 1562 189 107 0 0 chr6 128112248 128112276 -21404761 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 1562 393 102 0 0 chr6 128112324 128112383 -21404654 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1562 210 91 0 0 chr6 128112383 128112416 -21404621 + (GA)n Simple_repeat Simple_repeat 2 34 0 2 1562 923 289 36 4 chr6 128112450 128112724 -21404313 - B4A SINE B4 -8 284 2 2 1562 445 266 57 121 chr6 128112927 128113068 -21403969 + B1_Mm SINE Alu 15 146 -1 2 1562 3321 71 9 7 chr6 128113573 128114014 -21403023 + L1_Mus2 LINE L1 6125 6566 0 2 1562 430 308 29 22 chr6 128114113 128114249 -21402788 + B1F SINE Alu 13 149 0 2 1562 253 260 78 0 chr6 128114402 128114479 -21402558 + ID4 SINE ID 1 83 0 2 1562 499 244 86 90 chr6 128114610 128114730 -21402307 - RMER21B LTR ERV1 -298 544 408 2 1562 207 0 0 0 chr6 128114730 128114753 -21402284 + (AGGGGG)n Simple_repeat Simple_repeat 2 24 0 2 1562 499 244 86 90 chr6 128114753 128114866 -21402171 - RMER21B LTR ERV1 -435 407 312 2 1562 247 132 292 0 chr6 128115061 128115122 -21401915 + B1F1 SINE Alu 15 91 -56 2 1562 237 33 0 0 chr6 128115550 128115580 -21401457 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1562 342 319 35 0 chr6 128115686 128115827 -21401210 + L2a LINE L2 3274 3419 -7 2 1562 354 123 0 0 chr6 128116883 128116940 -21400097 + (A)n Simple_repeat Simple_repeat 1 57 0 2 1562 219 229 103 13 chr6 128116944 128117028 -21400009 - ID4_ SINE ID -61 91 1 2 1562 200 59 0 29 chr6 128117133 128117168 -21399869 + (CCCCCT)n Simple_repeat Simple_repeat 3 36 0 2 1562 200 286 18 0 chr6 128117306 128117362 -21399675 + MIRc SINE MIR 184 240 -28 2 1562 23 33 0 0 chr6 128117561 128117591 -21399446 + AT_rich Low_complexity Low_complexity 1 30 0 2 1562 295 314 48 48 chr6 128117628 128117752 -21399285 - MLT1J LTR MaLR -115 397 274 2 1562 551 293 46 13 chr6 128117753 128117905 -21399132 + RSINE1 SINE B4 3 159 -6 2 1562 505 288 128 66 chr6 128117923 128118150 -21398887 - MLT1J LTR MaLR -232 280 40 2 1562 285 327 48 9 chr6 128119679 128119784 -21397253 - LTR85a LTR Gypsy? -263 439 331 2 1562 251 245 217 38 chr6 128121545 128121690 -21395347 - MIRm SINE MIR -104 172 1 2 1562 272 145 0 28 chr6 128122950 128123021 -21394016 + (CAGA)n Simple_repeat Simple_repeat 2 70 0 2 1562 196 91 22 22 chr6 128123104 128123149 -21393888 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 2 1562 678 278 22 49 chr6 128123165 128123388 -21393649 + ID_B1 SINE B4 4 220 -4 2 1562 227 333 15 0 chr6 128123446 128123512 -21393525 - tRNA-Ala-GCA tRNA tRNA -8 67 1 2 1562 349 329 81 35 chr6 128123918 128124193 -21392844 - ORR1E LTR MaLR -98 272 1 2 1562 2437 280 114 45 chr6 128124193 128125075 -21391962 - ORR1E-int LTR MaLR -53 1527 583 2 1562 626 194 0 113 chr6 128125100 128125251 -21391786 + B3A SINE B2 1 134 -64 2 1562 435 119 0 0 chr6 128125253 128125320 -21391717 + (CACG)n Simple_repeat Simple_repeat 1 67 0 2 1562 1431 283 86 29 chr6 128125377 128125400 -21391637 - ORR1E-int LTR MaLR -1011 569 555 2 1562 1384 81 0 16 chr6 128125400 128125588 -21391449 + B2_Mm2 SINE B2 2 186 -9 2 1562 1431 283 86 29 chr6 128125588 128126088 -21390949 - ORR1E-int LTR MaLR -1026 554 16 2 1562 241 277 22 78 chr6 128126294 128126384 -21390653 - ORR1D1 LTR MaLR -263 111 27 2 1562 191 320 60 39 chr6 128126645 128126827 -21390210 + L2 LINE L2 2661 2846 -573 2 1562 3360 53 2 0 chr6 128126855 128127250 -21389787 - MTA_Mm LTR MaLR 0 396 1 2 1562 203 289 117 13 chr6 128127456 128127533 -21389504 - MIRc SINE MIR -165 103 19 2 1562 409 257 1 6 chr6 128127656 128127754 -21389283 - B1F SINE Alu -21 96 2 2 1562 487 264 28 0 chr6 128128775 128128881 -21388156 + B1F SINE Alu 2 110 -39 2 1562 293 244 160 43 chr6 128129046 128129140 -21387897 - PB1D7 SINE Alu -1 119 15 2 1562 198 0 0 0 chr6 128130455 128130477 -21386560 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1562 357 125 0 35 chr6 128130493 128130551 -21386486 - B1_Mur3 SINE Alu -27 122 67 2 1562 274 239 40 40 chr6 128133607 128133681 -21383356 - ID4 SINE ID -5 78 5 2 1562 194 233 32 75 chr6 128134348 128134441 -21382596 - L2 LINE L2 -636 2783 2695 2 1562 218 91 51 68 chr6 128137801 128137860 -21379177 + T-rich Low_complexity Low_complexity 2 59 0 2 1562 278 259 0 0 chr6 128138341 128138395 -21378642 + ID SINE ID 1 54 -170 2 1562 477 226 118 0 chr6 128139562 128139664 -21377373 - PB1D7 SINE Alu -6 114 1 2 1562 625 260 45 30 chr6 128140299 128140501 -21376536 - B3 SINE B2 -11 205 1 2 1562 442 235 61 0 chr6 128141670 128141768 -21375269 + Tigger5 DNA MER2_type 139 242 -2164 2 1562 262 296 116 14 chr6 128141744 128141806 -21375231 + Tigger5 DNA MER2_type 2245 2318 -88 2 1562 482 252 9 35 chr6 128141806 128141921 -21375116 - PB1D10 SINE Alu -1 116 5 2 1562 262 296 116 14 chr6 128141921 128142005 -21375032 + Tigger5 DNA MER2_type 2319 2405 -1 2 1562 263 323 0 15 chr6 128142052 128142118 -21374919 + ID_B1 SINE B4 98 162 -62 2 1562 429 202 50 20 chr6 128142122 128142223 -21374814 - B1F SINE Alu -31 118 15 2 1562 342 268 0 0 chr6 128142265 128142336 -21374701 - ID4 SINE ID -11 72 2 2 1562 335 333 18 36 chr6 128142374 128142486 -21374551 + PB1 SINE Alu 15 124 -3 2 1562 496 342 114 24 chr6 128142846 128143215 -21373822 - L1MEg LINE L1 -4854 1230 829 2 1562 221 333 0 0 chr6 128143294 128143357 -21373680 - PB1D10 SINE Alu -8 109 47 2 1562 528 65 0 0 chr6 128143492 128143569 -21373468 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1562 571 281 30 0 chr6 128143573 128143708 -21373329 - RSINE1 SINE B4 -17 148 10 2 1562 524 291 23 28 chr6 128144341 128144518 -21372519 - B2_Mm2 SINE B2 -18 177 2 2 1562 419 273 111 85 chr6 128144571 128144953 -21372084 - L1M4 LINE L1 -457 5722 5335 2 1562 11037 141 17 7 chr6 128144951 128147559 -21369478 + Lx LINE L1 4020 6654 0 2 1562 897 42 0 0 chr6 128147600 128147718 -21369319 + (TC)n Simple_repeat Simple_repeat 2 119 0 2 1562 483 234 103 0 chr6 128147772 128147879 -21369158 - PB1 SINE Alu -8 119 2 2 1562 281 206 167 0 chr6 128147886 128147988 -21369049 - L1M2 LINE L1 -820 5323 5205 2 1562 675 257 41 6 chr6 128148017 128148189 -21368848 - B3 SINE B2 -9 207 30 2 1562 393 265 0 0 chr6 128148237 128148320 -21368717 - B1_Mur3 SINE Alu -65 84 2 2 1562 228 158 0 0 chr6 128148322 128148360 -21368677 - B3A SINE B2 -159 39 2 2 1562 233 305 11 0 chr6 128148526 128148621 -21368416 + RMER12 LTR ERVK 745 840 -482 2 1562 507 300 15 51 chr6 128148619 128148669 -21368368 - ID_B1 SINE B4 -11 213 164 2 1562 276 30 0 0 chr6 128148669 128148702 -21368335 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1562 405 0 0 0 chr6 128148702 128148746 -21368291 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1562 507 300 15 51 chr6 128148746 128148831 -21368206 - ID_B1 SINE B4 -61 163 83 2 1562 23 0 0 0 chr6 128149271 128149294 -21367743 + AT_rich Low_complexity Low_complexity 1 23 0 2 1562 566 169 130 21 chr6 128149436 128149598 -21367439 + B3 SINE B2 12 189 -6 2 1562 349 225 100 0 chr6 128151191 128151271 -21365766 + B3 SINE B2 3 90 -126 2 1562 244 280 53 0 chr6 128151721 128151796 -21365241 + ID4_ SINE ID 5 83 0 2 1562 645 272 156 25 chr6 128153354 128153675 -21363362 - MTE2b LTR MaLR 0 379 47 2 1562 652 217 31 0 chr6 128153819 128153948 -21363089 + B1_Mur2 SINE Alu 5 137 -12 2 1562 653 12 25 0 chr6 128153948 128154029 -21363008 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 3 1562 1173 175 81 17 chr6 128154048 128154323 -21362714 + ORR1B2 LTR MaLR 6 359 -8 3 1562 306 106 0 0 chr6 128154327 128154374 -21362663 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 3 1562 618 204 78 28 chr6 128154591 128154732 -21362305 + B1_Mur1 SINE Alu 2 149 0 3 1562 342 333 79 0 chr6 128154865 128154979 -21362058 + B1_Mur2 SINE Alu 1 123 -26 3 1562 724 205 36 24 chr6 128155571 128155757 -21361280 + B3 SINE B2 2 191 -4 3 1562 346 192 45 100 chr6 128155752 128155862 -21361175 + MT2B LTR ERVL 155 258 -343 3 1562 745 154 29 0 chr6 128155769 128155893 -21361144 + B1_Mur2 SINE Alu 9 136 -13 3 1562 417 20 0 0 chr6 128155893 128155943 -21361094 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 3 1562 745 154 29 0 chr6 128155943 128155954 -21361083 + B1_Mur2 SINE Alu 137 147 -2 3 1562 663 262 14 7 chr6 128156243 128156385 -21360652 - B1_Mur4 SINE Alu -6 144 2 3 1562 1625 37 0 20 chr6 128157786 128157981 -21359056 + B2_Mm1a SINE B2 1 191 -2 3 1562 633 303 35 15 chr6 128158023 128158224 -21358813 - B3 SINE B2 -10 206 2 3 1562 239 209 0 0 chr6 128158255 128158298 -21358739 - PB1D9 SINE Alu -77 43 1 3 1562 266 205 145 6 chr6 128158428 128158524 -21358513 - B4A SINE B4 -91 201 83 3 1562 725 304 24 0 chr6 128159297 128159504 -21357533 - ID_B1 SINE B4 -12 212 1 3 1562 894 212 33 33 chr6 128159558 128159768 -21357269 + B3 SINE B2 1 210 -6 3 1562 546 189 102 8 chr6 128160069 128160197 -21356840 - B1_Mus2 SINE Alu -7 140 1 3 1562 822 145 227 23 chr6 128160455 128160631 -21356406 - B3 SINE B2 0 216 5 3 1562 226 250 0 116 chr6 128160816 128160902 -21356135 - BC1_Mm scRNA scRNA -62 90 15 3 1562 231 258 73 31 chr6 128161168 128161264 -21355773 - B4 SINE B4 -191 101 2 3 1562 22 70 0 0 chr6 128161980 128162023 -21355014 + AT_rich Low_complexity Low_complexity 1 43 0 3 1562 535 294 155 71 chr6 128162564 128163056 -21353981 + L1MC4 LINE L1 724 1183 -5032 3 1562 2585 154 66 50 chr6 128165679 128166197 -21350840 - RMER15 LTR ERVL -38 537 12 3 1562 2475 20 112 0 chr6 128166292 128166586 -21350451 + IAPLTR2b LTR ERVK 1 327 0 3 1562 258 292 93 19 chr6 128166663 128166771 -21350266 - B3A SINE B2 -82 116 1 3 1562 309 273 11 22 chr6 128166686 128166776 -21350261 - B4A SINE B4 -203 89 1 3 1562 529 278 21 0 chr6 128168156 128168300 -21348737 - B1F1 SINE Alu -2 147 1 3 1562 639 26 0 0 chr6 128168419 128168496 -21348541 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1562 287 287 83 26 chr6 128168562 128168755 -21348282 - L1M5 LINE L1 -2579 3567 3364 3 1562 2254 155 67 6 chr6 128168815 128169228 -21347809 + ORR1B1 LTR MaLR 1 386 -8 3 1562 373 229 146 0 chr6 128169353 128169449 -21347588 - PB1D10 SINE Alu -7 110 1 3 1562 705 56 0 0 chr6 128169829 128169919 -21347118 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 3 1562 933 264 10 0 chr6 128169922 128170123 -21346914 + B3 SINE B2 7 209 -7 3 1562 686 234 137 11 chr6 128170367 128170557 -21346480 - B3 SINE B2 -2 214 1 3 1562 235 196 0 21 chr6 128170752 128170799 -21346238 - MER5A1 DNA MER1_type 0 166 121 3 1562 219 214 71 0 chr6 128171146 128171202 -21345835 + L2a LINE L2 3314 3373 -53 3 1562 329 319 157 16 chr6 128171904 128172025 -21345012 + ID_B1 SINE B4 79 216 -8 3 1562 231 198 119 36 chr6 128172340 128172424 -21344613 - BC1_Mm scRNA scRNA -48 104 14 3 1562 468 268 35 0 chr6 128172752 128172891 -21344146 - ORR1E LTR MaLR -215 155 6 3 1562 298 268 133 9 chr6 128172898 128173011 -21344026 + MIRc SINE MIR 114 240 -28 3 1562 276 232 0 0 chr6 128173018 128173074 -21343963 + PB1D10 SINE Alu 1 56 -61 3 1562 284 256 131 24 chr6 128173474 128173558 -21343479 - MLT1J LTR MaLR -335 177 85 3 1562 535 258 24 44 chr6 128174211 128174413 -21342624 - LTR85a LTR Gypsy? -220 603 291 3 1562 396 0 0 0 chr6 128175020 128175064 -21341973 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1562 387 0 0 0 chr6 128175064 128175106 -21341931 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1562 180 0 0 0 chr6 128175145 128175165 -21341872 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 3 1562 450 0 0 0 chr6 128175889 128175939 -21341098 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1562 198 268 18 18 chr6 128176120 128176177 -21340860 + MIR SINE MIR 90 146 -116 3 1562 318 220 200 0 chr6 128176177 128176277 -21340760 + PB1 SINE Alu 1 120 -7 3 1562 349 268 292 40 chr6 128177173 128177375 -21339662 - MIRb SINE MIR -15 253 1 3 1562 962 152 6 0 chr6 128179899 128180076 -21336961 + GA-rich Low_complexity Low_complexity 1 178 0 3 1562 215 231 58 0 chr6 128180870 128180922 -21336115 + PB1D10 SINE Alu 43 97 -20 3 1562 279 0 0 0 chr6 128180922 128180953 -21336084 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 1562 210 150 0 0 chr6 128181518 128181558 -21335479 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 3 1562 522 191 15 31 chr6 128181643 128181773 -21335264 + MER34B-int LTR ERV1 1986 2113 -3243 3 1562 290 221 145 92 chr6 128182029 128182301 -21334736 - MTEa LTR MaLR 0 379 5 3 1562 1213 330 112 55 chr6 128182304 128182546 -21334491 - MTE-int LTR MaLR -60 1520 1267 3 1562 398 251 71 87 chr6 128182546 128182729 -21334308 + B3A SINE B2 1 180 -18 3 1562 1213 330 112 55 chr6 128182729 128183220 -21333817 - MTE-int LTR MaLR -314 1266 745 3 1562 352 286 178 15 chr6 128183312 128183447 -21333590 - RSINE1 SINE B4 -4 161 5 3 1562 1160 65 0 25 chr6 128183481 128183806 -21333231 + (TG)n Simple_repeat Simple_repeat 1 316 0 3 1562 238 294 47 12 chr6 128183806 128183892 -21333145 - L1M1 LINE L1 -381 5919 5831 3 1562 487 219 263 0 chr6 128183918 128184032 -21333005 - B1_Mus1 SINE Alu 0 148 5 3 1562 525 159 291 34 chr6 128184106 128184223 -21332814 - B1_Mur4 SINE Alu -1 149 3 3 1562 411 280 10 20 chr6 128185231 128185333 -21331704 - PB1D10 SINE Alu -3 114 14 3 1562 718 248 25 0 chr6 128185388 128185545 -21331492 - RSINE1 SINE B4 -2 163 3 3 1562 678 108 39 0 chr6 128185589 128185691 -21331346 - B1_Mus2 SINE Alu 0 147 42 3 1562 218 318 0 0 chr6 128185694 128185782 -21331255 + CT-rich Low_complexity Low_complexity 70 157 0 3 1562 262 154 111 37 chr6 128185785 128185839 -21331198 - B1_Mur4 SINE Alu -90 60 3 3 1562 469 236 14 0 chr6 128186205 128186353 -21330684 + (TA)n Simple_repeat Simple_repeat 2 151 0 3 1562 1405 67 10 68 chr6 128187204 128187411 -21329626 + B2_Mm2 SINE B2 1 195 0 3 1563 366 252 65 32 chr6 128188501 128188599 -21328438 + L1MC3 LINE L1 6543 6646 -1139 3 1563 243 0 0 0 chr6 128188599 128188626 -21328411 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 1563 366 252 65 32 chr6 128188626 128188650 -21328387 + L1MC3 LINE L1 6647 6669 -1116 3 1563 432 352 88 9 chr6 128189013 128189228 -21327809 + MLT1J LTR MaLR 244 475 -37 3 1563 595 243 89 34 chr6 128189332 128189511 -21327526 + B4 SINE B4 18 206 -86 3 1563 643 294 23 18 chr6 128189529 128189693 -21327344 + B1F SINE Alu 9 311 0 3 1563 534 322 39 65 chr6 128189738 128190044 -21326993 + HAL1 LINE L1 1260 1557 -950 3 1563 256 174 65 0 chr6 128190062 128190108 -21326929 + PB1D7 SINE Alu 6 54 -66 3 1563 244 271 51 0 chr6 128190576 128190635 -21326402 + tRNA-Ala-GCG tRNA tRNA 5 66 -9 3 1563 1228 54 0 0 chr6 128190749 128190897 -21326140 - B1_Mus1 SINE Alu 0 148 1 3 1563 195 42 0 0 chr6 128191184 128191208 -21325829 + (GGCTG)n Simple_repeat Simple_repeat 3 26 0 3 1563 253 282 47 12 chr6 128191333 128191419 -21325618 - LTR41 LTR ERVL -152 616 528 3 1563 180 0 0 0 chr6 128191437 128191457 -21325580 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1563 222 178 0 43 chr6 128192162 128192209 -21324828 + GA-rich Low_complexity Low_complexity 2 46 0 3 1563 552 140 11 2 chr6 128192640 128192734 -21324303 + ORR1A3 LTR MaLR 248 360 -14 3 1563 202 333 18 108 chr6 128193750 128193861 -21323176 - L2b LINE L2 -92 3283 3183 3 1563 567 168 0 0 chr6 128194023 128194118 -21322919 + B1_Mur4 SINE Alu 1 95 -55 3 1563 252 0 0 0 chr6 128194450 128194478 -21322559 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1563 2350 216 78 8 chr6 128194502 128194992 -21322045 + RMER5 LTR ERV1 1 524 -10 3 1563 207 244 32 75 chr6 128195607 128195700 -21321337 - L2b LINE L2 -636 2783 2695 3 1563 252 232 116 0 chr6 128197220 128197289 -21319748 + BC1_Mm scRNA scRNA 16 92 -60 3 1563 257 236 141 42 chr6 128198198 128198366 -21318671 + MIRm SINE MIR 30 222 -54 3 1563 349 278 0 2 chr6 128198378 128198394 -21318643 - ID4 SINE ID -63 89 46 3 1563 355 207 0 0 chr6 128198394 128198452 -21318585 - tRNA-Ala-GCY_ tRNA tRNA -8 67 10 3 1563 349 278 0 2 chr6 128198452 128198464 -21318573 - ID4 SINE ID -63 45 5 3 1563 1018 174 55 25 chr6 128199048 128199248 -21317789 - B3 SINE B2 -6 210 5 3 1563 291 241 48 48 chr6 128199278 128199361 -21317676 - ID4_ SINE ID 0 83 1 3 1563 227 226 18 70 chr6 128199379 128199436 -21317601 - tRNA-Ala-GCA tRNA tRNA -7 68 15 3 1563 315 287 80 36 chr6 128199444 128199556 -21317481 - PB1D10 SINE Alu 0 117 1 3 1563 267 371 95 0 chr6 128199565 128199670 -21317367 - PB1 SINE Alu -8 119 5 3 1563 875 141 0 0 chr6 128200989 128201117 -21315920 + B1_Mur4 SINE Alu 6 133 -17 3 1563 842 263 27 11 chr6 128202682 128202870 -21314167 - ID_B1 SINE B4 -31 193 3 3 1563 356 78 0 30 chr6 128203837 128203903 -21313134 + (TTTTTG)n Simple_repeat Simple_repeat 3 66 0 3 1563 1282 34 0 0 chr6 128203903 128204051 -21312986 - B1_Mus1 SINE Alu 0 148 1 4 1563 292 336 10 0 chr6 128204076 128204180 -21312857 + PB1D7 SINE Alu 2 106 -14 4 1563 195 42 0 0 chr6 128204181 128204205 -21312832 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1563 2299 144 94 0 chr6 128204426 128204808 -21312229 - MTC LTR MaLR -3 418 1 4 1563 228 350 41 10 chr6 128204965 128205063 -21311974 + B4A SINE B4 67 167 -125 4 1563 446 262 10 10 chr6 128204992 128205096 -21311941 + PB1D10 SINE Alu 9 112 -5 4 1563 294 225 112 0 chr6 128205172 128205252 -21311785 + L2 LINE L2 2626 2714 -705 4 1563 254 261 0 97 chr6 128205421 128205493 -21311544 + RMER13A LTR ERVK 209 273 -587 4 1563 210 254 248 26 chr6 128205892 128206005 -21311032 + L2 LINE L2 2751 2888 -531 4 1563 264 280 48 25 chr6 128206006 128206108 -21310929 + PB1 SINE Alu 27 214 -97 4 1563 189 0 0 0 chr6 128206181 128206202 -21310835 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1563 458 246 66 73 chr6 128206651 128206787 -21310250 + ID_B1 SINE B4 25 159 -65 4 1563 242 338 13 25 chr6 128206718 128206797 -21310240 + B1F2 SINE Alu 14 91 -58 4 1563 585 264 28 28 chr6 128206796 128206940 -21310097 + RSINE1 SINE B4 12 155 -10 4 1563 261 197 0 53 chr6 128206941 128207016 -21310021 + (CCAA)n Simple_repeat Simple_repeat 1 71 0 4 1563 559 254 131 0 chr6 128207024 128207154 -21309883 + RSINE1 SINE B4 19 165 0 4 1563 243 309 79 22 chr6 128207055 128207194 -21309843 + B2_Mm2 SINE B2 49 195 0 4 1563 480 233 359 0 chr6 128207201 128207360 -21309677 + B3 SINE B2 1 216 0 4 1563 245 189 0 25 chr6 128207774 128207833 -21309204 - PB1D10 SINE Alu -82 67 11 4 1563 461 279 18 18 chr6 128207861 128207970 -21309067 + B1F1 SINE Alu 24 132 -17 4 1563 517 232 10 0 chr6 128207970 128208069 -21308968 + B1_Mur4 SINE Alu 1 100 -50 4 1563 203 279 0 0 chr6 128208073 128208116 -21308921 + polypurine Low_complexity Low_complexity 3 45 0 4 1563 186 73 55 68 chr6 128208116 128208189 -21308848 + (CAAA)n Simple_repeat Simple_repeat 2 73 0 4 1563 635 215 6 111 chr6 128208365 128208527 -21308510 - B1_Mur1 SINE Alu 0 149 5 4 1563 210 333 15 0 chr6 128208614 128208680 -21308357 - MIR SINE MIR -72 136 70 4 1563 450 242 117 0 chr6 128209046 128209174 -21307863 + B1F SINE Alu 3 145 -4 4 1563 180 310 138 0 chr6 128209236 128209323 -21307714 + MIR SINE MIR 16 114 -94 4 1563 286 263 31 0 chr6 128210341 128210442 -21306595 + L1MB4 LINE L1 5425 5532 -639 4 1563 411 357 20 67 chr6 128210608 128210758 -21306279 + RSINE1 SINE B4 21 163 -2 4 1563 411 132 0 0 chr6 128210787 128210855 -21306182 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1563 200 149 21 21 chr6 128210859 128210907 -21306130 + C-rich Low_complexity Low_complexity 1 48 0 4 1563 597 188 12 0 chr6 128210907 128211029 -21306008 + B1_Mus2 SINE Alu 19 150 0 4 1563 34 42 0 0 chr6 128211053 128211101 -21305936 + AT_rich Low_complexity Low_complexity 1 48 0 4 1563 512 309 16 64 chr6 128211159 128211346 -21305691 + B3 SINE B2 39 216 0 4 1563 698 260 35 0 chr6 128211372 128211541 -21305496 + MTE2a LTR MaLR 196 370 -9 4 1563 243 0 0 0 chr6 128211566 128211593 -21305444 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 4 1563 573 225 21 48 chr6 128211593 128211738 -21305299 - B1_Mur2 SINE Alu -8 141 1 4 1563 251 248 96 34 chr6 128211754 128211900 -21305137 + L1MB4 LINE L1 5598 5752 -428 4 1563 221 366 0 0 chr6 128211936 128212018 -21305019 + ID4 SINE ID 2 83 0 4 1563 571 298 20 20 chr6 128212042 128212237 -21304800 + L1MB4 LINE L1 5906 6100 -80 4 1563 271 246 14 0 chr6 128212240 128212309 -21304728 + ID2 SINE ID 3 72 -11 4 1563 604 262 100 7 chr6 128212324 128212474 -21304563 + RSINE1 SINE B4 2 165 0 4 1563 699 248 176 64 chr6 128212509 128212759 -21304278 - B4A SINE B4 0 292 15 4 1563 208 135 0 0 chr6 128212775 128212812 -21304225 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 4 1563 1149 48 7 40 chr6 128212812 128212964 -21304073 - B1_Mm SINE Alu 0 147 1 4 1563 1142 70 0 0 chr6 128213050 128213193 -21303844 + B1_Mus1 SINE Alu 1 143 -5 4 1563 217 51 51 0 chr6 128213193 128213232 -21303805 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1563 225 259 102 34 chr6 128213268 128213356 -21303681 - MIRb SINE MIR -84 184 91 4 1563 310 234 25 38 chr6 128213498 128213578 -21303459 + MTD LTR MaLR 18 96 -323 4 1563 546 163 11 0 chr6 128213630 128213722 -21303315 + B1_Mur2 SINE Alu 45 137 -12 4 1563 852 159 188 21 chr6 128213786 128213978 -21303059 + MTD LTR MaLR 196 419 0 4 1563 213 121 0 0 chr6 128214704 128214737 -21302300 + (GGA)n Simple_repeat Simple_repeat 1 33 0 4 1563 227 167 0 0 chr6 128215788 128215836 -21301201 + L1M3 LINE L1 5804 5851 -332 4 1563 407 209 0 9 chr6 128215854 128215960 -21301077 + GA-rich Low_complexity Low_complexity 3 107 0 4 1563 590 259 30 0 chr6 128216041 128216172 -21300865 + B1_Mur1 SINE Alu 1 135 -14 4 1563 186 189 0 0 chr6 128216172 128216209 -21300828 + GA-rich Low_complexity Low_complexity 2 38 0 4 1563 309 109 0 0 chr6 128216428 128216474 -21300563 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1563 1088 211 14 5 chr6 128216711 128216925 -21300112 - B3 SINE B2 0 216 1 4 1563 294 259 12 72 chr6 128216927 128217025 -21300012 - RSINE1 SINE B4 -198 94 2 4 1563 378 0 0 0 chr6 128217027 128217069 -21299968 + (TTA)n Simple_repeat Simple_repeat 1 42 0 4 1563 3391 28 2 27 chr6 128217070 128217163 -21299874 + MTA_Mm LTR MaLR 1 92 -304 4 1563 1185 75 0 0 chr6 128217163 128217310 -21299727 + B1_Mm SINE Alu 1 147 0 4 1563 333 0 0 0 chr6 128217310 128217347 -21299690 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1563 3391 28 2 27 chr6 128217347 128217658 -21299379 + MTA_Mm LTR MaLR 93 395 -1 4 1563 743 236 7 0 chr6 128217659 128217803 -21299234 - B3A SINE B2 -12 186 42 4 1563 262 191 0 0 chr6 128217844 128217886 -21299151 - ID_B1 SINE B4 -13 211 170 4 1563 1551 206 124 42 chr6 128217906 128218286 -21298751 + MTD LTR MaLR 1 411 -8 4 1563 239 324 27 0 chr6 128219012 128219086 -21297951 - ID4_ SINE ID -6 77 2 4 1563 322 313 30 20 chr6 128219100 128219201 -21297836 + MLT1C LTR MaLR 78 179 -288 4 1563 867 196 130 5 chr6 128219203 128219388 -21297649 + B3 SINE B2 3 210 -6 4 1563 208 339 0 0 chr6 128220114 128220170 -21296867 + G-rich Low_complexity Low_complexity 5 60 0 4 1563 326 215 40 60 chr6 128220203 128220228 -21296809 - ID4_ SINE ID -47 105 5 4 1563 309 222 36 36 chr6 128220228 128220312 -21296725 - ID SINE ID -136 88 5 4 1563 243 0 0 0 chr6 128220433 128220460 -21296577 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 1563 1100 97 0 7 chr6 128220533 128220678 -21296359 + B1_Mus1 SINE Alu 2 145 -3 4 1563 225 0 0 0 chr6 128221235 128221260 -21295777 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 4 1563 833 109 0 15 chr6 128221350 128221480 -21295557 + B1_Mur3 SINE Alu 21 148 -1 4 1563 828 238 168 14 chr6 128221625 128221970 -21295067 + L1MB2 LINE L1 5643 6040 -131 4 1563 310 348 70 66 chr6 128222120 128222239 -21294798 + L1MEg LINE L1 1021 1131 -4953 4 1563 1297 103 33 0 chr6 128222239 128222423 -21294614 - B2_Mm1t SINE B2 -3 190 1 4 1563 310 348 70 66 chr6 128222423 128222546 -21294491 + L1MEg LINE L1 1132 1264 -4820 4 1563 493 278 114 57 chr6 128222743 128222953 -21294084 + B4A SINE B4 8 229 -63 4 1563 290 271 90 85 chr6 128222944 128223132 -21293905 + B4 SINE B4 8 159 -6 4 1563 264 167 0 0 chr6 128223139 128223187 -21293850 + (CACG)n Simple_repeat Simple_repeat 4 51 0 4 1563 677 240 8 0 chr6 128223191 128223320 -21293717 + B3 SINE B2 77 206 -10 4 1563 649 256 29 35 chr6 128223315 128223489 -21293548 + B3A SINE B2 26 198 0 4 1563 1961 206 27 27 chr6 128223541 128223946 -21293091 + MTD LTR MaLR 1 405 -14 4 1563 446 213 52 0 chr6 128224322 128224433 -21292604 + B1_Mur1 SINE Alu 1 130 -19 4 1563 948 65 0 0 chr6 128224622 128224746 -21292291 + (GAAA)n Simple_repeat Simple_repeat 3 126 0 4 1563 235 244 16 28 chr6 128224993 128225069 -21291968 + BC1_Mm scRNA scRNA 2 73 -10 4 1563 317 237 59 35 chr6 128226761 128226870 -21290167 + PB1D10 SINE Alu 4 103 -211 4 1563 233 192 0 19 chr6 128226876 128226929 -21290108 - L1_Mur3 LINE L1 -447 5433 5382 4 1563 1115 177 19 29 chr6 128226942 128227151 -21289886 - B3 SINE B2 -9 207 1 4 1563 672 231 0 58 chr6 128227213 128227369 -21289668 - B1_Mur1 SINE Alu -1 148 2 4 1563 770 290 36 0 chr6 128227449 128227642 -21289395 - Tigger5 DNA MER2_type -2206 200 1 4 1563 793 200 11 33 chr6 128228349 128228549 -21288488 + B3 SINE B2 1 187 -8 4 1563 896 168 35 0 chr6 128228551 128228694 -21288343 + B1_Mur4 SINE Alu 2 149 -1 4 1563 531 82 0 0 chr6 128228711 128228784 -21288253 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 4 1563 578 180 49 8 chr6 128228827 128228950 -21288087 + B1F1 SINE Alu 22 149 0 4 1563 215 333 103 0 chr6 128228953 128229040 -21287997 + PB1D10 SINE Alu 1 96 -21 4 1563 187 250 239 0 chr6 128229709 128229801 -21287236 - MIRc SINE MIR -122 146 33 4 1563 895 226 46 10 chr6 128229961 128230158 -21286879 + RMER5 LTR ERV1 1 204 -330 4 1563 335 91 0 35 chr6 128230160 128230217 -21286820 + (TTTTC)n Simple_repeat Simple_repeat 1 55 0 4 1563 723 161 0 9 chr6 128230222 128230335 -21286702 - B1_Mus1 SINE Alu -7 141 30 4 1563 1492 192 65 3 chr6 128230332 128230640 -21286397 + RMER5 LTR ERV1 195 521 -13 4 1563 22 0 0 0 chr6 128230647 128230669 -21286368 + GC_rich Low_complexity Low_complexity 1 22 0 4 1563 391 165 109 40 chr6 128231001 128231102 -21285935 + ID_B1 SINE B4 115 222 -2 4 1563 217 267 0 0 chr6 128231460 128231505 -21285532 - PB1D7 SINE Alu -64 56 12 4 1563 671 190 34 34 chr6 128231532 128231679 -21285358 + RSINE1 SINE B4 5 151 -14 4 1563 356 307 71 21 chr6 128231902 128232042 -21284995 + B1F2 SINE Alu 3 149 0 5 1563 468 0 0 0 chr6 128232058 128232110 -21284927 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1563 1307 235 98 0 chr6 128232266 128232581 -21284456 - MER82 DNA MER2_type -294 359 14 5 1563 332 309 55 0 chr6 128232593 128232703 -21284334 + PB1D10 SINE Alu 1 116 -1 5 1563 773 267 52 32 chr6 128232836 128233184 -21283853 + L1MB4 LINE L1 5726 6080 -100 5 1563 1087 178 54 5 chr6 128233235 128233438 -21283599 + B3 SINE B2 1 213 -3 5 1563 361 309 0 0 chr6 128233455 128233536 -21283501 + PB1D10 SINE Alu 1 81 -36 5 1563 303 270 77 122 chr6 128233536 128233605 -21283432 + MT2B2 LTR ERVL 162 300 -284 5 1563 383 209 132 0 chr6 128233588 128233679 -21283358 + PB1D9 SINE Alu 9 111 -9 5 1563 1099 97 0 13 chr6 128233778 128233934 -21283103 + B2_Mm2 SINE B2 2 155 -40 5 1563 301 240 26 26 chr6 128234053 128234130 -21282907 - ID4 SINE ID -5 78 2 5 1563 365 291 117 0 chr6 128234151 128234254 -21282783 - B1F1 SINE Alu -33 116 2 5 1563 456 72 0 0 chr6 128234313 128234382 -21282655 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1563 594 188 125 0 chr6 128234476 128234604 -21282433 + B1_Mur1 SINE Alu 1 144 -5 5 1563 363 127 0 0 chr6 128234914 128234969 -21282068 - HAL1-3A_ME LINE L1 -828 2030 1976 5 1563 597 188 0 9 chr6 128234973 128235331 -21281706 + (TG)n Simple_repeat Simple_repeat 1 354 0 5 1563 345 345 7 65 chr6 128235550 128235621 -21281416 + ID SINE ID 16 77 -147 5 1563 403 262 0 12 chr6 128235621 128235706 -21281331 + B1F SINE Alu 1 84 -65 5 1563 313 227 163 10 chr6 128236773 128236871 -21280166 + B4A SINE B4 124 236 -56 5 1563 265 288 0 0 chr6 128236898 128236964 -21280073 + L1MC2 LINE L1 6023 6088 -256 5 1563 524 216 43 123 chr6 128237159 128237370 -21279667 - B3A SINE B2 -4 194 1 5 1563 233 169 0 169 chr6 128237399 128237470 -21279567 + 4.5SRNA scRNA scRNA 27 85 -9 5 1563 475 178 0 91 chr6 128237409 128237508 -21279529 + B1_Mur1 SINE Alu 39 128 -21 5 1563 445 233 146 0 chr6 128237529 128237632 -21279405 + RSINE1 SINE B4 3 120 -45 5 1563 250 264 123 41 chr6 128238342 128238488 -21278549 + B2_Mm2 SINE B2 30 187 -8 5 1563 325 232 61 0 chr6 128238492 128238574 -21278463 + L1ME1 LINE L1 5339 5425 -934 5 1563 628 198 8 8 chr6 128238578 128238695 -21278342 + B3 SINE B2 3 119 -97 5 1563 219 139 0 0 chr6 128238710 128238746 -21278291 + (TTG)n Simple_repeat Simple_repeat 1 36 0 5 1563 366 206 8 52 chr6 128238746 128238843 -21278194 - B1_Mur3 SINE Alu -10 139 44 5 1563 265 217 57 14 chr6 128238845 128238915 -21278122 + B3 SINE B2 116 188 -28 5 1563 465 219 208 52 chr6 128239027 128239181 -21277856 - B3 SINE B2 -16 200 23 5 1563 631 293 70 72 chr6 128239207 128239767 -21277270 + L1ME1 LINE L1 5592 6151 -28 5 1563 432 0 0 0 chr6 128239816 128239864 -21277173 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1563 203 274 112 9 chr6 128239958 128240065 -21276972 + L2c LINE L2 3048 3165 -222 5 1563 189 0 0 0 chr6 128240312 128240333 -21276704 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1563 411 216 57 38 chr6 128240472 128240578 -21276459 - PB1D7 SINE Alu -1 119 12 5 1563 254 264 21 94 chr6 128240596 128240739 -21276298 - MIR SINE MIR -103 165 37 5 1563 246 259 68 34 chr6 128240746 128240834 -21276203 + MER33 DNA MER1_type 2 92 -232 5 1563 1209 48 0 14 chr6 128241046 128241193 -21275844 + B1_Mus1 SINE Alu 2 146 -2 5 1563 34 0 0 0 chr6 128241279 128241313 -21275724 + AT_rich Low_complexity Low_complexity 1 34 0 5 1563 634 279 11 53 chr6 128241356 128241545 -21275492 - B3A SINE B2 -16 182 2 5 1563 605 264 14 20 chr6 128241558 128241705 -21275332 - B1_Mur1 SINE Alu -2 147 2 5 1563 318 73 188 52 chr6 128241697 128241791 -21275246 + B1_Mm SINE Alu 1 147 0 5 1563 22 0 0 0 chr6 128241806 128241828 -21275209 + AT_rich Low_complexity Low_complexity 1 22 0 5 1563 233 233 100 0 chr6 128242048 128242108 -21274929 - PB1D10 SINE Alu -6 111 46 5 1563 373 336 0 69 chr6 128242762 128242922 -21274115 + B1F SINE Alu 1 149 0 5 1563 964 237 9 33 chr6 128242924 128243138 -21273899 + B3 SINE B2 1 209 -7 5 1563 1464 56 39 0 chr6 128243146 128243326 -21273711 + B2_Mm2 SINE B2 2 188 -7 5 1563 1392 73 5 35 chr6 128243410 128243608 -21273429 + B2_Mm1a SINE B2 2 193 0 5 1563 1276 106 16 21 chr6 128243729 128243921 -21273116 + B2_Mm2 SINE B2 1 191 -4 5 1563 24 0 0 0 chr6 128244574 128244598 -21272439 + AT_rich Low_complexity Low_complexity 1 24 0 5 1563 213 310 0 78 chr6 128244608 128244685 -21272352 - BC1_Mm scRNA scRNA -57 95 25 5 1563 240 222 0 0 chr6 128244813 128244858 -21272179 + ID_B1 SINE B4 180 224 0 5 1563 644 316 27 5 chr6 128244856 128245044 -21271993 + ID_B1 SINE B4 2 193 -31 5 1563 850 129 50 7 chr6 128245167 128245307 -21271730 + B1_Mus1 SINE Alu 3 148 0 5 1563 240 35 0 0 chr6 128245315 128245344 -21271693 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1563 200 321 36 0 chr6 128245459 128245515 -21271522 - L3 LINE CR1 -938 3551 3494 5 1563 300 212 30 0 chr6 128245624 128245690 -21271347 + tRNA-Ala-GCY_ tRNA tRNA 5 72 -3 5 1563 255 79 0 0 chr6 128247564 128247602 -21269435 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 5 1563 279 328 33 25 chr6 128247605 128247727 -21269310 - RMER12 LTR ERVK -461 861 739 5 1563 310 315 21 11 chr6 128247958 128248051 -21268986 + MIR SINE MIR 39 132 -76 5 1563 311 236 64 0 chr6 128248951 128249039 -21267998 + PB1D7 SINE Alu 40 137 -12 5 1563 350 288 81 0 chr6 128249143 128249254 -21267783 + PB1D7 SINE Alu 1 120 0 5 1563 439 303 82 35 chr6 128251568 128251739 -21265298 + MARNA DNA Mariner 404 582 -4 5 1563 218 229 21 0 chr6 128251985 128252033 -21265004 - ID4 SINE ID -32 51 3 5 1563 319 272 66 58 chr6 128252041 128252162 -21264875 - PB1 SINE Alu -2 125 4 5 1563 332 271 0 0 chr6 128252658 128252728 -21264309 + PB1D10 SINE Alu 41 110 -7 5 1563 936 138 63 52 chr6 128252736 128252902 -21264135 + B2_Mm2 SINE B2 1 168 -27 5 1563 842 0 10 0 chr6 128252902 128253000 -21264037 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 5 1563 936 138 63 52 chr6 128253000 128253024 -21264013 + B2_Mm2 SINE B2 169 193 -2 5 1563 414 0 0 0 chr6 128253117 128253163 -21263874 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 5 1563 467 230 174 41 chr6 128253353 128253525 -21263512 - B3A SINE B2 -3 195 1 5 1563 226 178 0 62 chr6 128254026 128254074 -21262963 - ID4 SINE ID 0 83 39 5 1563 1145 107 35 6 chr6 128254110 128254280 -21262757 - B2_Mm2 SINE B2 -19 176 2 5 1563 282 21 64 0 chr6 128254355 128254402 -21262635 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5 1563 946 171 0 20 chr6 128254402 128254551 -21262486 - B1_Mur4 SINE Alu -3 147 2 5 1563 252 250 38 50 chr6 128254625 128254705 -21262332 + RMER13A LTR ERVK 18 96 -764 5 1563 403 205 110 0 chr6 128254709 128254748 -21262289 - MT2A LTR ERVL -30 503 463 5 1563 312 48 0 0 chr6 128254748 128254790 -21262247 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1563 403 205 110 0 chr6 128254790 128254877 -21262160 - MT2A LTR ERVL -71 462 364 5 1563 1351 145 63 13 chr6 128254882 128255120 -21261917 + RMER13A LTR ERVK 125 374 -486 5 1563 726 65 176 0 chr6 128255124 128255232 -21261805 - B1_Mus1 SINE Alu -21 127 1 5 1563 809 268 75 33 chr6 128255232 128255533 -21261504 + RMER13A LTR ERVK 365 678 -182 5 1563 361 284 53 68 chr6 128255614 128255825 -21261212 + RMER13A LTR ERVK 659 870 -38 5 1563 202 182 0 0 chr6 128255835 128255868 -21261169 + (CTG)n Simple_repeat Simple_repeat 2 34 0 5 1563 278 273 91 0 chr6 128255891 128255968 -21261069 - PB1D7 SINE Alu -1 119 36 5 1563 21 71 0 0 chr6 128255988 128256030 -21261007 + AT_rich Low_complexity Low_complexity 1 42 0 5 1563 546 278 91 86 chr6 128256045 128256240 -21260797 - B3 SINE B2 0 216 21 5 1563 1151 174 181 25 chr6 128256240 128256280 -21260757 - MT2B LTR ERVL 0 601 541 5 1563 378 0 0 0 chr6 128256280 128256322 -21260715 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1563 330 26 0 0 chr6 128256322 128256361 -21260676 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1563 1151 174 181 25 chr6 128256361 128256601 -21260436 - MT2B LTR ERVL -61 540 277 5 1563 1367 67 51 10 chr6 128256597 128256794 -21260243 + ORR1A2 LTR MaLR 123 327 0 5 1563 850 182 7 0 chr6 128256832 128256969 -21260068 + B1_Mur4 SINE Alu 12 149 -1 5 1563 458 182 98 29 chr6 128256983 128257085 -21259952 - MT2B LTR ERVL -415 118 10 5 1563 1339 70 37 5 chr6 128257100 128257287 -21259750 + B2_Mm1a SINE B2 1 193 0 5 1563 270 0 0 0 chr6 128257406 128257436 -21259601 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 1563 498 33 0 0 chr6 128257436 128257495 -21259542 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1563 257 185 0 53 chr6 128257670 128257727 -21259310 + RSINE1 SINE B4 3 56 -109 5 1563 333 231 0 3 chr6 128257788 128257863 -21259174 + BC1_Mm scRNA scRNA 4 77 -6 5 1563 1225 55 0 0 chr6 128258059 128258205 -21258832 + B1_Mus2 SINE Alu 2 147 0 5 1563 832 196 21 0 chr6 128258292 128258435 -21258602 + B1F SINE Alu 3 148 -1 5 1563 613 268 43 38 chr6 128258441 128258627 -21258410 + B3 SINE B2 2 188 -28 5 1563 489 76 0 0 chr6 128258630 128258696 -21258341 + (TTTA)n Simple_repeat Simple_repeat 3 68 0 5 1563 2162 195 104 16 chr6 128258696 128259185 -21257852 + RMER16 LTR ERVK 2 533 0 5 1563 9031 99 34 32 chr6 128259185 128259846 -21257191 + RMER16-int LTR ERVK 1 670 -4736 5 1563 492 18 0 0 chr6 128259846 128259903 -21257134 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1563 9031 99 34 32 chr6 128259903 128260287 -21256750 + RMER16-int LTR ERVK 671 1081 -4325 5 1563 1230 54 0 0 chr6 128260287 128260435 -21256602 + B1_Mus1 SINE Alu 1 148 0 5 1563 9031 99 34 32 chr6 128260435 128260485 -21256552 + RMER16-int LTR ERVK 1082 1111 -4295 5 1563 1378 79 10 26 chr6 128260485 128260680 -21256357 + B2_Mm1t SINE B2 2 193 0 5 1563 9031 99 34 32 chr6 128260680 128261004 -21256033 + RMER16-int LTR ERVK 1112 1423 -3983 5 1563 881 153 28 171 chr6 128261067 128261214 -21255823 + RMER16-int LTR ERVK 1327 1463 -3943 5 1563 1276 34 0 0 chr6 128261214 128261361 -21255676 + B1_Mus2 SINE Alu 1 147 0 5 1563 881 153 28 171 chr6 128261361 128261465 -21255572 + RMER16-int LTR ERVK 1464 1542 -3864 5 1563 963 88 15 0 chr6 128261470 128261606 -21255431 + B2_Mm1t SINE B2 1 138 -55 6 1563 234 305 38 113 chr6 128261606 128261629 -21255408 + ID_B1 SINE B4 1 147 -77 6 1563 180 111 0 0 chr6 128261629 128261656 -21255381 + (GAA)n Simple_repeat Simple_repeat 1 27 0 6 1563 1085 37 81 0 chr6 128261671 128261807 -21255230 + B1_Mm SINE Alu 1 147 0 6 1563 380 198 0 55 chr6 128261831 128261846 -21255191 + MT2B LTR ERVL 155 164 -437 6 1563 466 141 70 12 chr6 128261846 128261932 -21255105 + B1_Mus1 SINE Alu 3 93 -55 6 1563 1173 71 0 0 chr6 128262280 128262420 -21254617 + B1_Mus1 SINE Alu 2 141 -7 6 1563 208 0 62 0 chr6 128262424 128262456 -21254581 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1563 241 137 284 0 chr6 128262741 128262843 -21254194 + L1MA5A LINE L1 6162 6292 -5 6 1563 406 271 64 73 chr6 128262864 128262993 -21254044 + ID_B1 SINE B4 2 132 -92 6 1563 199 0 65 0 chr6 128262993 128263024 -21254013 + (GGGTG)n Simple_repeat Simple_repeat 4 36 0 6 1563 406 271 64 73 chr6 128263024 128263113 -21253924 + ID_B1 SINE B4 133 218 -6 6 1563 1146 104 46 6 chr6 128263122 128263296 -21253741 + B2_Mm2 SINE B2 1 181 -14 6 1563 330 225 0 0 chr6 128263981 128264061 -21252976 + GA-rich Low_complexity Low_complexity 5 84 0 6 1563 326 279 44 26 chr6 128264212 128264326 -21252711 - PB1D10 SINE Alu 0 117 2 6 1563 509 78 533 0 chr6 128264357 128264447 -21252590 + B1_Mus1 SINE Alu 2 139 -9 6 1563 261 0 0 0 chr6 128264447 128264476 -21252561 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1563 1666 21 16 0 chr6 128264686 128264876 -21252161 - B2_Mm1a SINE B2 0 193 1 6 1563 589 302 56 46 chr6 128264932 128265230 -21251807 + MTE2b LTR MaLR 37 379 0 6 1563 353 211 0 14 chr6 128265365 128265437 -21251600 - RSINE1 SINE B4 -92 73 3 6 1563 1020 46 122 0 chr6 128265452 128265583 -21251454 - B1_Mm SINE Alu 0 147 1 6 1563 450 0 0 0 chr6 128265619 128265669 -21251368 + (T)n Simple_repeat Simple_repeat 1 50 0 6 1563 253 268 14 0 chr6 128266179 128266250 -21250787 + ID4 SINE ID 5 76 -7 6 1563 632 181 7 106 chr6 128266418 128266443 -21250594 + B1F2 SINE Alu 1 24 -125 6 1563 1091 64 28 21 chr6 128266443 128266587 -21250450 - B1_Mm SINE Alu 0 147 3 6 1563 632 181 7 106 chr6 128266587 128266703 -21250334 + B1F2 SINE Alu 25 128 -21 6 1563 546 67 0 0 chr6 128266869 128266944 -21250093 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1563 600 216 7 103 chr6 128266954 128267109 -21249928 - B1_Mur2 SINE Alu -8 141 2 6 1563 876 138 7 33 chr6 128267143 128267293 -21249744 + B1_Mus2 SINE Alu 2 147 0 6 1563 761 193 26 39 chr6 128267297 128267325 -21249712 - B3 SINE B2 -16 200 175 6 1563 2507 136 81 64 chr6 128267325 128267552 -21249485 - RLTR24 LTR ERV1 -2 527 275 6 1563 204 40 0 0 chr6 128267552 128267577 -21249460 + (CAGAG)n Simple_repeat Simple_repeat 3 27 0 6 1563 2507 136 81 64 chr6 128267577 128267867 -21249170 - RLTR24 LTR ERV1 -255 274 1 6 1563 761 193 26 39 chr6 128267867 128267994 -21249043 - B3 SINE B2 -42 174 47 6 1563 219 135 27 0 chr6 128268017 128268054 -21248983 + ID2 SINE ID 7 44 -39 6 1563 501 17 0 0 chr6 128268084 128268142 -21248895 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1563 2404 76 35 0 chr6 128268172 128268488 -21248549 - ORR1A2 LTR MaLR 0 327 1 6 1563 229 232 17 67 chr6 128268888 128268948 -21248089 + B4 SINE B4 1 57 -235 6 1563 775 118 67 0 chr6 128268949 128269068 -21247969 - B1_Mus1 SINE Alu -21 127 1 6 1563 402 292 0 30 chr6 128269067 128269166 -21247871 - B1_Mur2 SINE Alu 0 149 54 6 1563 501 240 49 142 chr6 128269182 128269386 -21247651 + B4 SINE B4 108 292 0 6 1563 253 200 66 16 chr6 128269434 128269495 -21247542 + ID_B1 SINE B4 158 221 -3 6 1563 612 226 34 74 chr6 128269501 128269649 -21247388 + B1_Mur1 SINE Alu 2 143 -6 6 1563 349 294 29 0 chr6 128269659 128269761 -21247276 - PB1D10 SINE Alu -10 107 3 6 1563 281 185 19 0 chr6 128269784 128269838 -21247199 + ID4_ SINE ID 26 80 -3 6 1563 669 244 68 68 chr6 128269906 128270113 -21246924 + B3 SINE B2 1 207 -9 6 1563 3081 60 36 0 chr6 128270295 128270681 -21246356 - MTB LTR MaLR 0 400 1 6 1563 304 218 142 24 chr6 128270760 128270868 -21246169 + PB1D10 SINE Alu 15 132 -17 6 1563 351 0 0 0 chr6 128270869 128270908 -21246129 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1563 783 167 65 0 chr6 128272125 128272263 -21244774 + B1_Mur3 SINE Alu 2 148 -1 6 1563 439 331 33 0 chr6 128272380 128272531 -21244506 + MER58A DNA MER1_type 5 160 -64 6 1563 213 132 0 0 chr6 128272870 128272908 -21244129 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1563 421 178 0 0 chr6 128272952 128273042 -21243995 + G-rich Low_complexity Low_complexity 33 122 0 6 1563 1052 141 195 0 chr6 128273262 128273447 -21243590 + URR1A DNA MER1_type 4 224 -2 6 1563 241 303 92 0 chr6 128273516 128273592 -21243445 + ID4 SINE ID 1 83 0 6 1563 363 113 0 0 chr6 128273595 128273657 -21243380 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 1563 24 0 0 0 chr6 128274323 128274347 -21242690 + AT_rich Low_complexity Low_complexity 1 24 0 6 1563 248 170 0 0 chr6 128274352 128274405 -21242632 - Lx4A LINE L1 0 7058 7006 6 1563 697 178 0 0 chr6 128274457 128274564 -21242473 - B3 SINE B2 -109 107 1 6 1563 527 209 25 115 chr6 128274591 128274638 -21242399 - ID_B1 SINE B4 0 224 82 6 1563 918 36 0 0 chr6 128274638 128274748 -21242289 - B1_Mus1 SINE Alu -38 110 1 6 1563 280 238 8 32 chr6 128274641 128274767 -21242270 - ORR1B1-int LTR MaLR -756 753 631 6 1563 466 257 8 58 chr6 128275267 128275387 -21241650 + PB1 SINE Alu 1 114 -13 6 1563 255 208 0 0 chr6 128275399 128275419 -21241618 + A-rich Low_complexity Low_complexity 1 20 0 6 1563 490 220 112 15 chr6 128275419 128275553 -21241484 + B1F1 SINE Alu 1 147 -2 6 1563 255 208 0 0 chr6 128275553 128275609 -21241428 + A-rich Low_complexity Low_complexity 21 76 0 6 1563 34 89 0 0 chr6 128276125 128276215 -21240822 + AT_rich Low_complexity Low_complexity 1 90 0 6 1563 248 326 163 0 chr6 128276235 128276327 -21240710 - PB1D9 SINE Alu -8 112 6 6 1563 915 130 14 14 chr6 128276350 128276498 -21240539 - B1_Mus1 SINE Alu 0 148 1 6 1563 272 294 14 56 chr6 128276575 128276647 -21240390 + ID4_ SINE ID 4 72 -11 6 1563 416 302 73 47 chr6 128276918 128277001 -21240036 + ID_B1 SINE B4 21 216 -8 6 1563 620 172 65 65 chr6 128277001 128277109 -21239928 + B1_Mur4 SINE Alu 27 142 -8 6 1563 236 53 26 0 chr6 128277109 128277147 -21239890 + (CAA)n Simple_repeat Simple_repeat 2 40 0 6 1563 620 172 65 65 chr6 128277147 128277162 -21239875 + B1_Mur4 SINE Alu 143 150 0 6 1563 1157 64 14 0 chr6 128278390 128278530 -21238507 + B1_Mus1 SINE Alu 1 142 -6 6 1563 212 79 53 0 chr6 128278555 128278593 -21238444 + (GAAAA)n Simple_repeat Simple_repeat 1 40 0 6 1563 219 146 0 0 chr6 128278692 128278733 -21238304 + (A)n Simple_repeat Simple_repeat 1 41 0 6 1563 7266 180 42 10 chr6 128278801 128278987 -21238050 + L1_Mur2 LINE L1 1002 1260 -6468 6 1563 207 0 0 0 chr6 128278987 128279010 -21238027 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1563 7266 139 27 18 chr6 128279010 128280331 -21236706 + L1_Mur2 LINE L1 1261 2593 -3284 6 1563 293 254 0 0 chr6 128280331 128280390 -21236647 + RSINE1 SINE B4 87 145 -20 6 1563 429 20 0 0 chr6 128280391 128280441 -21236596 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1563 216 240 0 39 chr6 128280441 128280458 -21236579 + (TAG)n Simple_repeat Simple_repeat 1 17 0 6 1563 1340 92 16 0 chr6 128280458 128280642 -21236395 + B2_Mm1t SINE B2 2 188 -5 6 1563 216 240 0 39 chr6 128280642 128280676 -21236361 + (TAG)n Simple_repeat Simple_repeat 3 35 0 6 1563 711 202 23 8 chr6 128280689 128280819 -21236218 + ID_B1 SINE B4 82 213 -11 6 1563 608 173 45 0 chr6 128280905 128281015 -21236022 - B1_Mur4 SINE Alu -1 149 35 6 1563 741 221 208 11 chr6 128281238 128281421 -21235616 - ID_B1 SINE B4 -1 223 5 6 1563 676 144 73 48 chr6 128281468 128281592 -21235445 - B1_Mus2 SINE Alu -19 128 2 6 1563 301 223 11 11 chr6 128281599 128281694 -21235343 + CT-rich Low_complexity Low_complexity 2 96 0 6 1563 1612 32 21 0 chr6 128281696 128281885 -21235152 - B2_Mm1a SINE B2 0 193 1 6 1563 1518 72 0 5 chr6 128281889 128282084 -21234953 - B2_Mm2 SINE B2 -1 194 1 6 1563 842 102 226 43 chr6 128282088 128282252 -21234785 - B2_Mm2 SINE B2 -1 194 1 6 1563 306 363 54 46 chr6 128282431 128282561 -21234476 - RSINE1 SINE B4 -28 137 7 6 1563 333 232 165 21 chr6 128282730 128282827 -21234210 + PB1D10 SINE Alu 7 117 0 6 1563 916 124 0 14 chr6 128282838 128282977 -21234060 + B1_Mus1 SINE Alu 2 138 -10 6 1563 23 0 0 0 chr6 128284373 128284396 -21232641 + GC_rich Low_complexity Low_complexity 1 23 0 6 1563 302 290 37 9 chr6 128284674 128284782 -21232255 - PB1D10 SINE Alu -2 115 5 6 1563 1303 220 161 28 chr6 128284962 128285322 -21231715 - MTC LTR MaLR -13 408 1 6 1563 260 121 20 5 chr6 128285361 128285408 -21231629 + PB1 SINE Alu 11 61 -66 6 1563 348 111 0 0 chr6 128285410 128285464 -21231573 - B1_Mus1 SINE Alu -93 55 2 6 1563 241 236 0 89 chr6 128285465 128285530 -21231507 + PB1 SINE Alu 53 111 -16 6 1563 501 32 0 0 chr6 128285530 128285593 -21231444 + (CAAAC)n Simple_repeat Simple_repeat 5 67 0 6 1563 241 236 0 89 chr6 128285593 128285606 -21231431 + PB1 SINE Alu 112 124 -3 6 1563 517 207 50 33 chr6 128285704 128285824 -21231213 - B3 SINE B2 -1 215 94 6 1563 223 241 80 57 chr6 128285760 128285848 -21231189 + PB1D9 SINE Alu 15 104 -16 6 1563 360 306 69 13 chr6 128286046 128286205 -21230832 + B4 SINE B4 125 292 0 6 1563 347 102 0 0 chr6 128286231 128286280 -21230757 + L1MA6 LINE L1 6251 6299 -1 6 1563 387 129 282 0 chr6 128286344 128286429 -21230608 + PB1D10 SINE Alu 1 109 -8 7 1563 419 147 9 136 chr6 128286441 128286463 -21230574 + B4 SINE B4 74 81 -211 7 1563 536 82 11 45 chr6 128286463 128286552 -21230485 + B1_Mur4 SINE Alu 1 86 -64 7 1563 622 219 0 16 chr6 128286636 128286757 -21230280 + MTC LTR MaLR 1 119 -302 7 1563 428 237 36 58 chr6 128286762 128286901 -21230136 + MLT1A1 LTR MaLR 269 404 -4 7 1563 723 253 45 132 chr6 128286968 128287430 -21229607 + RLTR11B LTR ERVK 1 423 -18 7 1563 283 289 48 0 chr6 128287452 128287535 -21229502 - B1F1 SINE Alu -62 87 1 7 1563 196 329 0 56 chr6 128288215 128288305 -21228732 - MIRb SINE MIR -12 256 172 7 1563 827 124 86 21 chr6 128288313 128288453 -21228584 + B1_Mur4 SINE Alu 2 150 0 7 1563 254 307 80 0 chr6 128288455 128288530 -21228507 + ID4_ SINE ID 3 83 0 7 1563 871 0 8 32 chr6 128288757 128288880 -21228157 + (GGGA)n Simple_repeat Simple_repeat 2 121 0 7 1563 452 215 0 0 chr6 128289358 128289437 -21227600 + ID4 SINE ID 3 81 -2 7 1563 321 298 62 46 chr6 128289562 128289692 -21227345 - MLT1A0 LTR MaLR -231 134 3 7 1563 373 125 161 54 chr6 128290244 128290337 -21226700 + B1F2 SINE Alu 47 149 0 7 1563 189 327 115 53 chr6 128290626 128290739 -21226298 - MIR SINE MIR -131 131 12 7 1563 664 279 75 46 chr6 128290963 128291203 -21225834 - B4A SINE B4 -41 251 5 7 1563 1543 57 5 0 chr6 128291353 128291545 -21225492 - B2_Mm1a SINE B2 0 193 1 7 1563 885 146 35 0 chr6 128291814 128291958 -21225079 - B1_Mur4 SINE Alu 0 150 2 7 1563 1957 130 13 20 chr6 128292498 128292804 -21224233 + ORR1A4 LTR MaLR 1 304 -25 7 1563 912 173 13 0 chr6 128293521 128293671 -21223366 + B3 SINE B2 65 216 0 7 1563 351 0 0 0 chr6 128293739 128293778 -21223259 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1563 258 262 14 71 chr6 128293818 128293888 -21223149 + PB1D10 SINE Alu 10 75 -42 7 1563 1225 27 7 7 chr6 128294043 128294190 -21222847 + B1_Mus2 SINE Alu 1 147 0 7 1563 913 210 48 14 chr6 128294222 128294430 -21222607 + B3 SINE B2 1 215 -1 7 1563 1193 137 55 31 chr6 128294711 128294967 -21222070 + RMER17C LTR ERVK 88 349 -61 7 1563 285 98 0 0 chr6 128294969 128295010 -21222027 + (A)n Simple_repeat Simple_repeat 1 41 0 7 1563 237 132 0 0 chr6 128295037 128295075 -21221962 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1563 1239 48 0 0 chr6 128295075 128295221 -21221816 - B1_Mm SINE Alu 0 147 2 7 1563 206 250 45 45 chr6 128295241 128295266 -21221771 + polypurine Low_complexity Low_complexity 2 24 0 7 1563 276 53 0 0 chr6 128295266 128295304 -21221733 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 7 1563 206 250 45 45 chr6 128295304 128295345 -21221692 + polypurine Low_complexity Low_complexity 25 68 0 7 1563 234 0 0 0 chr6 128295345 128295371 -21221666 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 7 1563 705 187 119 0 chr6 128295500 128295634 -21221403 + B1_Mur4 SINE Alu 1 150 0 7 1563 733 132 81 87 chr6 128296156 128296305 -21220732 - B1_Mus1 SINE Alu 0 148 1 7 1563 471 270 95 0 chr6 128296326 128296452 -21220585 - ID_B1 SINE B4 -1 223 86 7 1563 227 330 42 42 chr6 128296708 128296803 -21220234 + B1F2 SINE Alu 34 128 -21 7 1563 334 257 53 44 chr6 128297856 128297970 -21219067 + PB1D7 SINE Alu 6 120 0 7 1563 606 261 104 7 chr6 128298169 128298323 -21218714 - B3A SINE B2 -28 170 2 7 1563 523 265 197 0 chr6 128298416 128298548 -21218489 - RSINE1 SINE B4 -7 158 1 7 1563 769 111 191 0 chr6 128298620 128298746 -21218291 - B1_Mur4 SINE Alu 0 150 1 7 1563 351 296 42 25 chr6 128298783 128298901 -21218136 - PB1 SINE Alu -7 120 1 7 1563 308 269 0 0 chr6 128299001 128299068 -21217969 + PB1D10 SINE Alu 8 74 -43 7 1563 247 270 0 26 chr6 128299253 128299323 -21217714 + PB1D10 SINE Alu 11 78 -39 7 1563 461 302 16 0 chr6 128299323 128299449 -21217588 + RSINE1 SINE B4 1 128 -37 7 1563 333 0 0 0 chr6 128299483 128299520 -21217517 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1563 483 18 0 0 chr6 128299520 128299575 -21217462 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1563 438 214 133 29 chr6 128299598 128299737 -21217300 + B3A SINE B2 49 189 -6 7 1563 180 0 0 0 chr6 128300155 128300175 -21216862 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1563 331 151 41 0 chr6 128300206 128300279 -21216758 + CT-rich Low_complexity Low_complexity 1 76 0 7 1563 1349 78 15 20 chr6 128300284 128300480 -21216557 - B2_Mm2 SINE B2 0 195 1 7 1563 681 277 26 26 chr6 128300490 128300683 -21216354 - B3A SINE B2 -1 197 5 7 1563 281 279 46 46 chr6 128300703 128300812 -21216225 - PB1D10 SINE Alu -8 109 1 7 1563 204 111 43 22 chr6 128300816 128300843 -21216194 + polypyrimidine Low_complexity Low_complexity 23 50 0 7 1563 1010 120 7 0 chr6 128300843 128300985 -21216052 - B1_Mus1 SINE Alu -5 143 1 7 1563 204 111 43 22 chr6 128300985 128301003 -21216034 + polypyrimidine Low_complexity Low_complexity 4 22 0 7 1563 353 253 53 0 chr6 128301109 128301184 -21215853 - B1F1 SINE Alu -12 137 59 7 1563 1494 63 16 5 chr6 128301247 128301439 -21215598 + B2_Mm2 SINE B2 2 195 0 7 1563 374 263 72 36 chr6 128301805 128301943 -21215094 + RSINE1 SINE B4 2 144 -21 7 1563 180 111 0 0 chr6 128301974 128302001 -21215036 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7 1563 749 149 41 34 chr6 128302003 128302149 -21214888 - B1_Mus1 SINE Alu 0 148 2 7 1563 2587 167 59 15 chr6 128302177 128302605 -21214432 + L1_Mur2 LINE L1 5109 5551 -326 7 1563 198 71 0 0 chr6 128302605 128302633 -21214404 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 7 1563 2587 167 59 15 chr6 128302633 128302750 -21214287 + L1_Mur2 LINE L1 5552 5677 -200 7 1563 4052 203 58 33 chr6 128302785 128303523 -21213514 + Lx5 LINE L1 6057 6809 -241 7 1563 1411 53 32 11 chr6 128303523 128303712 -21213325 - B2_Mm1t SINE B2 0 193 1 7 1563 4052 203 58 33 chr6 128303712 128303932 -21213105 + Lx5 LINE L1 6810 7039 -11 7 1563 198 171 0 0 chr6 128303942 128303983 -21213054 + GA-rich Low_complexity Low_complexity 2 42 0 7 1563 360 248 53 71 chr6 128304006 128304119 -21212918 + B1F1 SINE Alu 3 113 -36 7 1563 413 212 111 0 chr6 128304421 128304520 -21212517 + B1_Mur1 SINE Alu 40 149 0 7 1563 561 191 17 34 chr6 128306473 128306592 -21210445 - PB1D9 SINE Alu -3 117 1 7 1563 953 163 124 0 chr6 128306593 128306771 -21210266 - B3 SINE B2 -12 204 5 7 1563 198 0 0 0 chr6 128306882 128306904 -21210133 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1563 234 0 0 0 chr6 128308219 128308245 -21208792 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1563 368 210 36 10 chr6 128308678 128308774 -21208263 - PB1D10 SINE Alu -5 112 15 7 1563 967 86 63 28 chr6 128309538 128309681 -21207356 - B1_Mus1 SINE Alu 0 148 1 7 1563 181 343 14 82 chr6 128309742 128309815 -21207222 - L2c LINE L2 -4 3383 3316 7 1563 364 209 0 15 chr6 128309876 128309944 -21207093 + ID4 SINE ID 16 82 -1 7 1563 328 241 38 12 chr6 128309944 128309956 -21207081 + ID_B1 SINE B4 16 97 -127 7 1563 276 239 185 0 chr6 128310129 128310221 -21206816 + PB1D10 SINE Alu 1 109 -8 7 1563 359 297 99 0 chr6 128310234 128310345 -21206692 + ID_B1 SINE B4 86 207 -17 7 1563 1113 34 0 115 chr6 128310453 128310618 -21206419 + B1_Mus1 SINE Alu 2 147 -1 7 1563 219 36 0 0 chr6 128310624 128310652 -21206385 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1563 670 212 58 7 chr6 128310838 128310976 -21206061 + B1_Mur2 SINE Alu 2 146 -3 7 1563 311 278 100 0 chr6 128311348 128311438 -21205599 - PB1D7 SINE Alu 0 120 22 7 1563 590 293 95 11 chr6 128311452 128311642 -21205395 - MTE2b LTR MaLR -44 335 130 7 1563 886 170 13 13 chr6 128311729 128311878 -21205159 - B1_Mur1 SINE Alu 0 149 1 7 1563 256 354 135 0 chr6 128311881 128311977 -21205060 - PB1D10 SINE Alu -8 109 1 7 1563 203 138 0 0 chr6 128312206 128312235 -21204802 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 7 1563 22 81 0 33 chr6 128312791 128312881 -21204156 + GC_rich Low_complexity Low_complexity 1 87 0 7 1563 36 87 0 0 chr6 128313021 128313113 -21203924 + GC_rich Low_complexity Low_complexity 1 92 0 7 1563 427 267 28 9 chr6 128313831 128313937 -21203100 + PB1D10 SINE Alu 1 108 -9 7 1563 747 112 17 17 chr6 128314064 128314171 -21202866 + PB1D9 SINE Alu 2 109 -11 7 1563 216 0 0 0 chr6 128314171 128314195 -21202842 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1563 215 81 0 75 chr6 128314310 128314350 -21202687 + B3A SINE B2 1 37 -161 7 1563 586 221 82 0 chr6 128314398 128314520 -21202517 + ID_B1 SINE B4 25 156 -68 7 1563 266 286 13 67 chr6 128314556 128314631 -21202406 + ID4_ SINE ID 9 79 -4 7 1563 522 299 14 14 chr6 128315054 128315200 -21201837 - RSINE1 SINE B4 -18 147 2 7 1563 325 219 122 0 chr6 128315222 128315304 -21201733 - BC1_Mm scRNA scRNA -49 103 12 7 1563 365 252 48 105 chr6 128315414 128315427 -21201610 - PB1D10 SINE Alu 0 117 56 7 1563 455 226 206 0 chr6 128315427 128315529 -21201508 - ID_B1 SINE B4 -8 216 94 7 1563 180 0 0 0 chr6 128316381 128316401 -21200636 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 7 1563 2087 117 69 11 chr6 128316420 128316767 -21200270 - ORR1C2 LTR MaLR 0 384 18 7 1563 1486 43 32 0 chr6 128316767 128316953 -21200084 - B2_Mm1a SINE B2 -1 192 1 7 1563 202 240 40 0 chr6 128316992 128317042 -21199995 - MIRm SINE MIR -121 155 104 7 1563 1174 76 0 0 chr6 128317601 128317746 -21199291 - B1_Mus1 SINE Alu 0 148 4 8 1563 425 139 126 0 chr6 128317837 128317937 -21199100 + B1_Mur4 SINE Alu 4 140 -10 8 1563 323 212 140 52 chr6 128317938 128318075 -21198962 - PB1D10 SINE Alu -11 138 5 8 1563 849 253 26 48 chr6 128318655 128318883 -21198154 - ID_B1 SINE B4 -1 223 1 8 1563 809 177 169 16 chr6 128319026 128319210 -21197827 + URR1A DNA MER1_type 1 212 -14 8 1564 317 275 122 30 chr6 128319656 128319773 -21197264 - PB1 SINE Alu -2 125 3 8 1564 759 78 0 0 chr6 128319842 128319945 -21197092 + (TG)n Simple_repeat Simple_repeat 1 103 0 8 1564 251 330 96 0 chr6 128320009 128320103 -21196934 - RSINE1 SINE B4 -15 150 48 8 1564 195 324 54 0 chr6 128321357 128321431 -21195606 - MER5A DNA MER1_type -44 145 68 8 1564 716 223 133 35 chr6 128321451 128321707 -21195330 - B4A SINE B4 -8 284 4 8 1564 279 275 60 0 chr6 128324980 128325061 -21191976 + PB1D7 SINE Alu 9 103 -14 8 1564 306 266 32 81 chr6 128326086 128326209 -21190828 - PB1D10 SINE Alu 0 117 1 8 1564 287 250 171 39 chr6 128326218 128326347 -21190690 - B1F2 SINE Alu -1 148 3 8 1564 525 333 52 0 chr6 128326526 128326679 -21190358 + RSINE1 SINE B4 4 164 -1 8 1564 228 258 164 15 chr6 128326939 128327006 -21190031 - ORR1E LTR MaLR 0 359 283 8 1564 3236 26 45 0 chr6 128327459 128327838 -21189199 + MTA_Mm LTR MaLR 1 396 0 8 1564 334 308 127 8 chr6 128327944 128328078 -21188959 + RSINE1 SINE B4 13 162 -3 8 1564 601 221 29 44 chr6 128328126 128328263 -21188774 + B3 SINE B2 66 200 -16 8 1564 982 239 167 24 chr6 128328419 128328706 -21188331 - MTE2b LTR MaLR -32 347 20 8 1564 711 308 29 124 chr6 128328711 128328799 -21188238 + B4 SINE B4 8 96 -196 8 1564 825 206 94 16 chr6 128328799 128328991 -21188046 + B3 SINE B2 2 208 -8 8 1564 711 308 29 124 chr6 128328991 128329217 -21187820 + B4 SINE B4 97 292 0 8 1564 488 244 43 0 chr6 128330446 128330561 -21186476 - PB1D7 SINE Alu 0 120 1 8 1564 780 205 13 130 chr6 128330600 128330830 -21186207 - B3 SINE B2 -12 204 2 8 1564 507 33 0 0 chr6 128330831 128330892 -21186145 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 8 1564 1472 68 10 5 chr6 128330903 128331096 -21185941 - B2_Mm2 SINE B2 0 195 2 8 1564 861 150 0 0 chr6 128331097 128331244 -21185793 + (TCCC)n Simple_repeat Simple_repeat 3 149 0 8 1564 441 260 67 0 chr6 128331322 128331426 -21185611 - PB1D10 SINE Alu -5 112 2 8 1564 1193 62 0 0 chr6 128332008 128332153 -21184884 + B1_Mus2 SINE Alu 1 145 -2 8 1564 860 111 7 0 chr6 128332153 128332288 -21184749 + (GAAA)n Simple_repeat Simple_repeat 2 137 0 8 1564 772 257 7 0 chr6 128332555 128332707 -21184330 - B3A SINE B2 -44 154 2 8 1564 308 118 114 2 chr6 128332718 128332777 -21184260 - PB1D9 SINE Alu 0 149 63 8 1564 845 327 10 48 chr6 128332925 128333214 -21183823 + B4A SINE B4 15 292 0 8 1564 672 226 7 43 chr6 128333403 128333540 -21183497 + ID_B1 SINE B4 87 218 -6 8 1564 298 235 0 110 chr6 128333540 128333631 -21183406 + ID4_ SINE ID 1 81 -2 8 1564 383 231 180 101 chr6 128333566 128333744 -21183293 + ID_B1 SINE B4 18 209 -15 8 1564 239 270 27 13 chr6 128334039 128334055 -21182982 + B4A SINE B4 70 86 -206 8 1564 307 277 43 0 chr6 128334055 128334149 -21182888 + B1F1 SINE Alu 1 98 -51 8 1564 329 240 13 51 chr6 128334187 128334266 -21182771 + ID4 SINE ID 2 77 -6 8 1564 648 236 168 6 chr6 128334292 128334471 -21182566 + B3 SINE B2 1 208 -8 8 1564 402 203 0 0 chr6 128335330 128335394 -21181643 + ID2 SINE ID 3 66 -17 8 1564 2489 174 58 13 chr6 128335705 128336170 -21180867 + RLTR18B LTR ERVK 27 512 0 8 1564 709 206 9 98 chr6 128336538 128336780 -21180257 - B3A SINE B2 0 216 1 8 1564 628 257 116 18 chr6 128336983 128337316 -21179721 + L1MB4 LINE L1 5800 6180 -3 8 1564 455 277 42 14 chr6 128337490 128337633 -21179404 + B1_Mur3 SINE Alu 1 147 -2 8 1564 243 297 75 21 chr6 128337658 128337751 -21179286 + ORR1E LTR MaLR 14 111 -248 8 1564 324 0 0 0 chr6 128337995 128338031 -21179006 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1564 571 191 33 50 chr6 128338031 128338152 -21178885 - RSINE1 SINE B4 -44 121 3 8 1564 22 0 0 0 chr6 128338246 128338268 -21178769 + AT_rich Low_complexity Low_complexity 1 22 0 8 1564 1253 31 83 53 chr6 128338268 128338414 -21178623 + B2_Mm1a SINE B2 1 160 -33 8 1564 198 0 0 0 chr6 128338414 128338436 -21178601 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 8 1564 1253 31 83 53 chr6 128338436 128338458 -21178579 + B2_Mm1a SINE B2 161 174 -19 8 1564 1318 92 6 0 chr6 128338471 128338645 -21178392 - B2_Mm1a SINE B2 -18 175 1 8 1564 362 187 63 0 chr6 128338650 128338735 -21178302 - B1F1 SINE Alu -5 112 26 8 1564 420 191 100 42 chr6 128339563 128339669 -21177368 + B1F2 SINE Alu 23 140 -9 8 1564 468 0 0 0 chr6 128339669 128339721 -21177316 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1564 420 191 100 42 chr6 128339721 128339734 -21177303 + B1F2 SINE Alu 141 149 0 8 1564 415 263 82 71 chr6 128339784 128339968 -21177069 - MER5A DNA MER1_type -3 186 1 8 1564 496 246 0 91 chr6 128340482 128340625 -21176412 + B1F SINE Alu 20 149 0 8 1564 819 148 0 0 chr6 128340768 128340890 -21176147 - B2_Mm2 SINE B2 -72 123 2 8 1564 624 81 0 0 chr6 128341003 128341090 -21175947 + (TC)n Simple_repeat Simple_repeat 2 88 0 8 1564 270 0 0 0 chr6 128341106 128341136 -21175901 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1564 324 0 0 0 chr6 128341136 128341171 -21175866 + (GA)n Simple_repeat Simple_repeat 1 36 0 8 1564 220 204 0 0 chr6 128341313 128341367 -21175670 + (TTA)n Simple_repeat Simple_repeat 1 54 0 8 1564 444 37 0 0 chr6 128341474 128341528 -21175509 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 8 1564 828 143 0 0 chr6 128341528 128341668 -21175369 + (GAGAA)n Simple_repeat Simple_repeat 3 142 0 8 1564 757 153 84 0 chr6 128341687 128341818 -21175219 + B1_Mur4 SINE Alu 1 142 -8 8 1564 198 0 0 0 chr6 128341818 128341840 -21175197 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 8 1564 1076 241 0 9 chr6 128341853 128342071 -21174966 + B3 SINE B2 1 216 0 8 1564 471 200 11 11 chr6 128342184 128342275 -21174762 + PB1D7 SINE Alu 22 112 -8 8 1564 199 158 53 0 chr6 128342474 128342512 -21174525 - MIRc SINE MIR -119 149 110 8 1564 789 186 0 41 chr6 128342660 128342806 -21174231 - B1_Mur1 SINE Alu -7 142 3 8 1564 399 226 63 45 chr6 128342841 128342860 -21174177 - B1F1 SINE Alu -23 126 110 8 1564 522 0 0 0 chr6 128342860 128342918 -21174119 + (TC)n Simple_repeat Simple_repeat 1 58 0 8 1564 399 226 63 45 chr6 128342918 128343009 -21174028 - B1F1 SINE Alu -40 109 15 8 1564 444 19 0 0 chr6 128343075 128343128 -21173909 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1564 375 267 19 19 chr6 128343128 128343231 -21173806 - RSINE1 SINE B4 -45 120 18 8 1564 1009 48 0 16 chr6 128343879 128344007 -21173030 + B1_Mus1 SINE Alu 23 148 0 8 1564 246 132 0 0 chr6 128344007 128344060 -21172977 + (A)n Simple_repeat Simple_repeat 1 53 0 8 1564 362 235 15 0 chr6 128344066 128344134 -21172903 + ID_B1 SINE B4 141 209 -15 8 1564 240 210 24 12 chr6 128344135 128344145 -21172892 + (TA)n Simple_repeat Simple_repeat 1 10 0 8 1564 3209 163 179 57 chr6 128344145 128344912 -21172125 + RMER13A LTR ERVK 1 860 0 8 1564 240 210 24 12 chr6 128344912 128344983 -21172054 + (TA)n Simple_repeat Simple_repeat 2 74 0 8 1564 209 200 127 0 chr6 128344987 128345042 -21171995 + L3b LINE CR1 250 311 -171 8 1564 453 335 15 64 chr6 128345179 128345383 -21171654 + ID_B1 SINE B4 9 202 -22 8 1564 22 70 0 0 chr6 128345408 128345451 -21171586 + AT_rich Low_complexity Low_complexity 1 43 0 8 1564 424 288 105 19 chr6 128345469 128345678 -21171359 - MER33 DNA MER1_type -66 258 32 8 1564 214 301 82 0 chr6 128345705 128345778 -21171259 + ID SINE ID 1 79 -145 8 1564 360 0 0 0 chr6 128345788 128345828 -21171209 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1564 262 256 24 71 chr6 128345828 128345882 -21171155 + MTEa LTR MaLR 12 61 -318 8 1564 1166 158 49 32 chr6 128345882 128346148 -21170889 + ORR1C2 LTR MaLR 3 366 -18 8 1564 358 203 80 13 chr6 128346145 128346220 -21170817 + MTEb LTR MaLR 53 132 -247 8 1564 399 56 0 0 chr6 128346255 128346309 -21170728 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1564 927 334 52 14 chr6 128346369 128346733 -21170304 - MT2A LTR ERVL -144 389 12 8 1564 1102 153 63 10 chr6 128347020 128347225 -21169812 + B3 SINE B2 1 216 0 8 1564 246 32 0 0 chr6 128347232 128347263 -21169774 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1564 570 171 78 11 chr6 128347270 128347403 -21169634 + B1_Mur2 SINE Alu 1 147 0 8 1564 241 330 36 122 chr6 128347516 128347540 -21169497 - ID_B1 SINE B4 -3 221 200 8 1564 857 234 65 10 chr6 128347540 128347739 -21169298 - B3 SINE B2 -6 210 1 8 1564 241 330 36 122 chr6 128347739 128347752 -21169285 - ID_B1 SINE B4 -25 199 153 8 1564 254 257 12 108 chr6 128347752 128347835 -21169202 - PB1 SINE Alu -15 112 38 8 1564 241 330 36 122 chr6 128347835 128347867 -21169170 - ID_B1 SINE B4 -25 152 22 8 1564 268 203 15 106 chr6 128347867 128347933 -21169104 - ID4_ SINE ID -3 80 21 8 1564 366 288 117 67 chr6 128347995 128348174 -21168863 - B3A SINE B2 -4 194 7 8 1564 275 281 122 20 chr6 128348280 128348335 -21168702 - B3A SINE B2 -90 108 44 8 1564 831 127 71 8 chr6 128348335 128348462 -21168575 - B1_Mur4 SINE Alu -15 135 1 8 1564 275 281 122 20 chr6 128348462 128348504 -21168533 - B3A SINE B2 -155 43 2 8 1564 573 131 269 0 chr6 128348527 128348672 -21168365 - Lx2B LINE L1 0 7000 6817 9 1564 972 144 92 145 chr6 128348674 128348902 -21168135 - B3 SINE B2 0 216 1 9 1564 1013 98 21 123 chr6 128348933 128349120 -21167917 + B2_Mm2 SINE B2 2 169 -26 9 1564 189 0 0 0 chr6 128349120 128349141 -21167896 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 1564 384 176 54 20 chr6 128349166 128349255 -21167782 - B1F1 SINE Alu -48 101 13 9 1564 450 0 0 0 chr6 128349749 128349799 -21167238 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1564 361 276 233 11 chr6 128350962 128351153 -21165884 + MIR SINE MIR 11 245 -31 9 1564 343 189 81 0 chr6 128351842 128351916 -21165121 - B1F1 SINE Alu -1 148 69 9 1564 396 265 6 11 chr6 128351960 128352062 -21164975 - B1F1 SINE Alu -8 112 7 9 1564 391 271 14 198 chr6 128351972 128352184 -21164853 - ID_B1 SINE B4 -51 173 1 9 1564 773 193 35 0 chr6 128352625 128352770 -21164267 + B1_Mur4 SINE Alu 1 150 0 9 1564 314 61 20 0 chr6 128352776 128352825 -21164212 + (CAA)n Simple_repeat Simple_repeat 2 51 0 9 1564 674 210 58 35 chr6 128352831 128353028 -21164009 + B3 SINE B2 1 193 -2 9 1564 574 169 161 0 chr6 128353111 128353235 -21163802 - B1_Mur2 SINE Alu -1 148 5 9 1564 300 333 0 22 chr6 128353261 128353350 -21163687 - PB1D10 SINE Alu -30 87 1 9 1564 677 228 20 7 chr6 128353433 128353579 -21163458 + B1_Mur1 SINE Alu 2 149 0 9 1564 875 153 20 46 chr6 128353580 128353731 -21163306 + B1_Mur4 SINE Alu 2 148 -2 9 1564 253 48 45 61 chr6 128353736 128353802 -21163235 + (CAAAC)n Simple_repeat Simple_repeat 2 66 0 9 1564 227 309 12 12 chr6 128353808 128353890 -21163147 + ID4 SINE ID 2 83 0 9 1564 597 260 88 38 chr6 128353955 128354115 -21162922 + B3 SINE B2 9 176 -40 9 1564 653 169 96 8 chr6 128354439 128354564 -21162473 - B1_Mur3 SINE Alu -13 136 1 9 1564 495 204 169 4 chr6 128354566 128354704 -21162333 - ID_B1 SINE B4 -44 248 89 9 1564 469 246 52 38 chr6 128354703 128354822 -21162215 - B3 SINE B2 -73 120 4 9 1564 457 255 152 48 chr6 128355421 128355586 -21161451 - B3A SINE B2 -16 182 1 9 1564 1089 72 153 18 chr6 128355707 128355877 -21161160 - B2_Mm2 SINE B2 -2 193 1 9 1564 186 152 61 0 chr6 128356079 128356112 -21160925 + L2c LINE L2 3339 3373 -14 9 1564 386 232 40 59 chr6 128356650 128356751 -21160286 - PB1D7 SINE Alu 0 120 22 9 1564 394 298 97 0 chr6 128356829 128356943 -21160094 + ID_B1 SINE B4 93 217 -7 9 1564 577 196 104 15 chr6 128357129 128357264 -21159773 - B1_Mur3 SINE Alu 0 149 3 9 1564 380 314 48 16 chr6 128359186 128359312 -21157725 + B3A SINE B2 2 131 -67 9 1564 186 43 0 0 chr6 128359334 128359357 -21157680 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1564 243 208 52 65 chr6 128359357 128359434 -21157603 - MT2B LTR ERVL -321 280 205 9 1564 238 238 102 65 chr6 128359484 128359592 -21157445 + YREP_Mm Unknown Unknown 182 293 -1519 9 1564 330 244 128 0 chr6 128359530 128359608 -21157429 - PB1D10 SINE Alu -22 95 8 9 1564 262 267 93 0 chr6 128360910 128360985 -21156052 - ID4 SINE ID 0 83 2 9 1564 857 212 68 43 chr6 128361190 128361397 -21155640 + B3 SINE B2 2 213 -3 9 1564 240 245 170 75 chr6 128361742 128361848 -21155189 + PB1D10 SINE Alu 1 116 -1 9 1564 187 323 41 10 chr6 128361995 128362092 -21154945 - MIRb SINE MIR -78 190 91 9 1564 1144 178 63 15 chr6 128362479 128362684 -21154353 + B3 SINE B2 2 216 0 9 1564 243 242 0 0 chr6 128362827 128362926 -21154111 + (TG)n Simple_repeat Simple_repeat 1 99 0 9 1564 581 100 0 11 chr6 128363727 128363818 -21153219 + (GGGA)n Simple_repeat Simple_repeat 4 93 0 9 1564 1364 104 0 5 chr6 128364701 128364894 -21152143 + B2_Mm2 SINE B2 2 193 -2 9 1564 636 242 114 78 chr6 128364949 128365115 -21151922 + B3A SINE B2 14 185 -10 9 1564 1058 85 39 0 chr6 128365127 128365280 -21151757 + B2_Mm1t SINE B2 21 179 -14 9 1564 312 123 343 9 chr6 128365351 128365456 -21151581 + B2_Mm2 SINE B2 48 187 -8 9 1564 309 329 0 0 chr6 128365643 128365728 -21151309 + L2a LINE L2 3333 3417 -9 9 1564 333 141 0 0 chr6 128366086 128366157 -21150880 + (GA)n Simple_repeat Simple_repeat 1 71 0 9 1564 445 270 0 20 chr6 128366547 128366649 -21150388 + PB1D7 SINE Alu 13 112 -8 9 1564 355 241 5 8 chr6 128366824 128366908 -21150129 + PB1D10 SINE Alu 43 124 -25 9 1564 765 252 175 13 chr6 128367095 128367429 -21149608 + MTD LTR MaLR 13 413 -6 9 1564 239 192 0 141 chr6 128367832 128367917 -21149120 + ID4_ SINE ID 2 74 -9 9 1564 615 178 95 15 chr6 128367937 128368074 -21148963 + B1_Mur3 SINE Alu 2 149 0 9 1564 394 271 65 9 chr6 128368100 128368208 -21148829 + ID_B1 SINE B4 95 208 -16 9 1564 448 202 25 8 chr6 128368225 128368335 -21148702 + PB1D10 SINE Alu 21 136 -13 9 1564 447 68 0 0 chr6 128368418 128368477 -21148560 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1564 207 125 0 0 chr6 128368969 128369009 -21148028 + (T)n Simple_repeat Simple_repeat 1 40 0 9 1564 1224 68 0 0 chr6 128369009 128369156 -21147881 - B1_Mus2 SINE Alu 0 147 1 9 1564 1450 73 21 0 chr6 128369171 128369362 -21147675 - B2_Mm2 SINE B2 0 195 1 9 1564 1075 101 0 1 chr6 128369517 128369663 -21147374 - B1_Mus2 SINE Alu -5 142 2 9 1564 942 191 132 0 chr6 128369687 128369876 -21147161 - B3 SINE B2 0 216 3 9 1564 1254 48 0 0 chr6 128370098 128370244 -21146793 + B1_Mus2 SINE Alu 1 146 -1 9 1564 423 0 0 0 chr6 128370244 128370291 -21146746 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 9 1564 1343 101 37 0 chr6 128370305 128370493 -21146544 + B2_Mm2 SINE B2 1 195 0 9 1564 537 16 0 0 chr6 128370727 128370789 -21146248 + (TA)n Simple_repeat Simple_repeat 2 63 0 9 1564 579 296 34 7 chr6 128370798 128370944 -21146093 - RSINE1 SINE B4 0 165 16 9 1564 239 287 0 113 chr6 128370962 128371068 -21145969 + MT2B2 LTR ERVL 152 245 -339 9 1564 312 170 289 39 chr6 128370995 128371099 -21145938 + B1F SINE Alu 19 148 -1 9 1564 690 218 45 0 chr6 128371682 128371815 -21145222 - B1F2 SINE Alu -10 139 1 9 1564 247 308 0 0 chr6 128371851 128371916 -21145121 - ID4 SINE ID -14 69 5 9 1564 393 270 0 73 chr6 128372159 128372255 -21144782 + RSINE1 SINE B4 54 142 -23 9 1564 268 285 15 29 chr6 128372344 128372450 -21144587 + B3 SINE B2 8 112 -104 9 1564 778 221 14 0 chr6 128372628 128372773 -21144264 - B1_Mus2 SINE Alu 0 147 1 9 1564 300 214 96 41 chr6 128372794 128372867 -21144170 - ID4 SINE ID -2 81 5 9 1564 1294 102 11 0 chr6 128373005 128373182 -21143855 + B2_Mm1t SINE B2 1 179 -14 9 1564 364 75 444 12 chr6 128373229 128373310 -21143727 + B2_Mm2 SINE B2 47 162 -33 9 1564 207 0 0 0 chr6 128373311 128373334 -21143703 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 9 1564 1262 41 0 0 chr6 128373466 128373613 -21143424 + B1_Mm SINE Alu 1 147 0 9 1564 303 93 0 0 chr6 128373614 128373657 -21143380 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 9 1564 23 0 0 0 chr6 128373681 128373704 -21143333 + AT_rich Low_complexity Low_complexity 1 23 0 9 1564 226 319 0 0 chr6 128373756 128373828 -21143209 - MIR SINE MIR -7 255 184 9 1564 22 35 0 0 chr6 128374301 128374330 -21142707 + AT_rich Low_complexity Low_complexity 1 29 0 9 1564 963 195 68 5 chr6 128374330 128374521 -21142516 + B3 SINE B2 3 205 -11 9 1564 785 217 50 77 chr6 128375197 128375417 -21141620 + B3 SINE B2 1 214 -2 9 1564 207 0 0 0 chr6 128375486 128375509 -21141528 + (TA)n Simple_repeat Simple_repeat 1 23 0 9 1564 255 281 218 35 chr6 128375573 128375743 -21141294 - MIRb SINE MIR -48 220 20 9 1564 656 270 37 6 chr6 128375957 128376119 -21140918 + ID_B1 SINE B4 81 253 -39 9 1564 349 278 119 9 chr6 128376127 128376236 -21140801 + ID_B1 SINE B4 103 223 -1 9 1564 180 111 0 0 chr6 128376780 128376807 -21140230 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 9 1564 657 167 129 45 chr6 128376813 128376945 -21140092 - B1_Mur4 SINE Alu -6 144 2 9 1564 557 240 62 8 chr6 128377145 128377275 -21139762 - B4A SINE B4 -2 290 154 9 1564 1153 82 14 0 chr6 128377404 128377550 -21139487 + B1_Mus1 SINE Alu 1 148 0 9 1564 540 81 0 0 chr6 128377565 128377639 -21139398 + (GA)n Simple_repeat Simple_repeat 1 74 0 9 1564 1159 68 7 0 chr6 128377909 128378056 -21138981 + B1_Mus1 SINE Alu 1 148 0 9 1564 342 229 175 63 chr6 128378455 128378570 -21138467 + B3 SINE B2 76 204 -12 9 1564 526 233 105 0 chr6 128378570 128378703 -21138334 - B1F2 SINE Alu -1 148 2 9 1564 342 180 719 119 chr6 128378703 128378732 -21138305 + B3 SINE B2 164 214 -2 9 1564 333 304 96 21 chr6 128378733 128378921 -21138116 - B3 SINE B2 -14 202 1 9 1564 382 253 46 0 chr6 128378923 128379010 -21138027 - B4A SINE B4 -198 94 4 9 1564 387 221 157 52 chr6 128379545 128379679 -21137358 - B1_Mur3 SINE Alu 0 149 2 9 1564 1076 45 0 0 chr6 128379763 128379897 -21137140 - B1_Mus1 SINE Alu 0 148 15 9 1564 639 179 9 164 chr6 128379897 128379977 -21137060 - ID_B1 SINE B4 0 224 44 9 1564 297 270 14 0 chr6 128381078 128381152 -21135885 - ID4_ SINE ID 0 83 9 9 1564 216 0 0 0 chr6 128381307 128381331 -21135706 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1564 1188 54 14 0 chr6 128381331 128381478 -21135559 - B1_Mur4 SINE Alu 0 150 2 1 1564 310 220 14 3 chr6 128381814 128381893 -21135144 + B1_Mus2 SINE Alu 23 104 -44 1 1564 721 212 66 40 chr6 128382125 128382405 -21134632 + ORR1D1 LTR MaLR 1 361 -9 1 1564 234 170 21 21 chr6 128384092 128384140 -21132897 + L2b LINE L2 3328 3375 0 1 1564 229 297 44 67 chr6 128384619 128384780 -21132257 - MIRc SINE MIR -51 157 9 1 1564 1199 28 14 7 chr6 128384942 128385087 -21131950 - B1_Mur4 SINE Alu -1 149 4 1 1564 1218 41 0 7 chr6 128386193 128386341 -21130696 - B1_Mus2 SINE Alu 0 147 1 1 1564 229 293 74 41 chr6 128386376 128386497 -21130540 - PB1 SINE Alu -2 125 1 1 1564 186 43 0 0 chr6 128387075 128387098 -21129939 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1564 398 284 71 0 chr6 128389867 128389994 -21127043 + RSINE1 SINE B4 2 137 -28 1 1564 664 268 55 0 chr6 128391842 128392006 -21125031 - B3 SINE B2 -10 206 34 1 1564 189 107 0 0 chr6 128392186 128392214 -21124823 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1564 367 295 22 52 chr6 128392232 128392368 -21124669 - RSINE1 SINE B4 -21 144 13 1 1564 261 0 0 0 chr6 128392368 128392397 -21124640 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 1 1564 785 127 0 53 chr6 128392412 128392545 -21124492 - B1_Mur4 SINE Alu -10 140 15 1 1564 411 290 28 104 chr6 128392545 128392640 -21124397 - ID_B1 SINE B4 -23 269 50 1 1564 1239 27 7 0 chr6 128392872 128393018 -21124019 + B1_Mus1 SINE Alu 2 148 0 1 1564 240 111 0 0 chr6 128393018 128393063 -21123974 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1564 262 240 60 14 chr6 128393528 128393612 -21123425 - L1M2 LINE L1 -326 5830 5743 1 1564 1194 61 0 0 chr6 128393838 128393985 -21123052 + B1_Mus1 SINE Alu 2 148 0 1 1564 263 49 24 0 chr6 128393985 128394026 -21123011 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 1 1564 521 257 33 33 chr6 128394144 128394297 -21122740 - ID_B1 SINE B4 -3 221 69 1 1564 1107 63 0 27 chr6 128394626 128394773 -21122264 + B1_Mus1 SINE Alu 2 144 -4 1 1564 216 0 0 0 chr6 128394774 128394798 -21122239 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 1564 1297 206 57 58 chr6 128395778 128396220 -21120817 + RMER10A LTR ERVL 2 442 0 1 1564 253 304 57 29 chr6 128399096 128399201 -21117836 - L2c LINE L2 -246 3141 3034 1 1564 1691 291 57 31 chr6 128399353 128399928 -21117109 + Lx8 LINE L1 6635 7224 -249 1 1564 308 274 59 42 chr6 128399919 128400037 -21117000 + Lx8 LINE L1 7153 7272 -201 1 1564 1109 176 33 114 chr6 128400098 128400457 -21116580 + RMER17C LTR ERVK 46 375 -35 1 1564 788 183 112 51 chr6 128400487 128400512 -21116525 - B3 SINE B2 -5 211 187 1 1564 384 22 0 0 chr6 128400512 128400557 -21116480 + (TATG)n Simple_repeat Simple_repeat 2 46 0 1 1564 788 183 112 51 chr6 128400557 128400727 -21116310 - B3 SINE B2 -30 186 4 1 1564 254 269 73 105 chr6 128401283 128401474 -21115563 - B2_Mm2 SINE B2 0 195 11 1 1564 724 289 0 0 chr6 128401320 128401476 -21115561 - RSINE1 SINE B4 0 165 10 1 1564 471 281 86 0 chr6 128401473 128401601 -21115436 - ID_B1 SINE B4 -5 219 81 1 1564 249 289 13 13 chr6 128401602 128401679 -21115358 - ID4_ SINE ID -6 77 1 1 1564 30 0 0 0 chr6 128401883 128401913 -21115124 + AT_rich Low_complexity Low_complexity 1 30 0 1 1564 261 212 21 0 chr6 128401915 128401972 -21115065 + PB1D9 SINE Alu 2 59 -90 1 1564 180 0 0 0 chr6 128402076 128402096 -21114941 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 1 1564 506 281 16 8 chr6 128402200 128402322 -21114715 - RSINE1 SINE B4 0 165 43 1 1564 240 376 91 32 chr6 128402704 128402891 -21114146 - LTR33 LTR ERVL -296 219 22 1 1564 453 182 22 22 chr6 128402961 128403051 -21113986 - B1_Mur1 SINE Alu 0 149 60 1 1564 297 282 23 32 chr6 128403276 128403436 -21113601 + MTE-int LTR MaLR 1 264 -1316 1 1564 883 264 48 73 chr6 128403473 128403658 -21113379 + Lx8 LINE L1 7166 7343 -130 1 1564 1136 85 0 0 chr6 128403658 128403799 -21113238 + B1_Mus2 SINE Alu 2 142 -5 1 1564 198 0 0 0 chr6 128403802 128403824 -21113213 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1564 883 264 48 73 chr6 128403824 128403949 -21113088 + Lx8 LINE L1 7344 7472 -1 1 1564 797 274 128 47 chr6 128404035 128404264 -21112773 + L1MA6 LINE L1 5271 5518 -782 1 1564 429 170 0 31 chr6 128404264 128404361 -21112676 - Lx3C LINE L1 -4 6972 6879 1 1564 797 274 128 47 chr6 128404361 128404375 -21112662 + L1MA6 LINE L1 5519 5530 -770 1 1564 540 239 79 14 chr6 128404375 128404515 -21112522 + B1_Mur1 SINE Alu 1 149 0 1 1564 797 274 128 47 chr6 128404515 128404569 -21112468 + L1MA6 LINE L1 5531 5602 -698 1 1564 231 36 0 0 chr6 128404569 128404597 -21112440 + (CAG)n Simple_repeat Simple_repeat 2 29 0 1 1564 797 279 117 48 chr6 128404597 128404979 -21112058 + L1MA6 LINE L1 5589 5959 -1685 1 1564 655 197 173 11 chr6 128405126 128405311 -21111726 + B3 SINE B2 2 216 0 1 1564 833 129 131 28 chr6 128405327 128405503 -21111534 + B2_Mm2 SINE B2 1 194 -1 1 1564 298 104 398 20 chr6 128405818 128405916 -21111121 - B2_Mm2 SINE B2 -14 181 47 1 1564 859 126 179 0 chr6 128405960 128406111 -21110926 - B2_Mm1t SINE B2 -14 179 2 1 1564 352 267 44 30 chr6 128406717 128406852 -21110185 + MLT2F LTR ERVL 2 138 -525 1 1564 667 266 37 37 chr6 128406986 128407201 -21109836 + B3 SINE B2 1 215 -1 1 1564 574 197 173 0 chr6 128407329 128407456 -21109581 - B1_Mur3 SINE Alu 0 149 1 1 1564 6251 78 54 8 chr6 128407992 128408761 -21108276 - Lx3_Mus LINE L1 -8 7001 6215 1 1564 2744 73 143 139 chr6 128408761 128409271 -21107766 + RLTR1B LTR ERV1 1 512 0 1 1564 6251 78 54 8 chr6 128409271 128409397 -21107640 - Lx3_Mus LINE L1 -795 6214 6065 1 1564 631 168 65 0 chr6 128409589 128409696 -21107341 - B1_Mur1 SINE Alu -34 115 2 1 1564 337 309 29 7 chr6 128409856 128409993 -21107044 + MLT2D LTR ERVL 1 140 -274 1 1564 5338 132 108 66 chr6 128410368 128411427 -21105610 - RLTR25A LTR ERVK 0 1103 1 1 1564 517 188 45 0 chr6 128411473 128411585 -21105452 - B1_Mus2 SINE Alu 0 147 31 1 1564 1070 259 68 10 chr6 128411618 128411910 -21105127 + MTEb LTR MaLR 62 370 -9 1 1564 875 172 132 29 chr6 128412172 128412346 -21104691 + ORR1B1 LTR MaLR 1 192 -202 1 1564 856 128 253 16 chr6 128413427 128413609 -21103428 + ORR1A4 LTR MaLR 105 329 0 1 1564 505 307 178 28 chr6 128413705 128414060 -21102977 - Lx8 LINE L1 -188 7285 6878 1 1564 1252 34 0 0 chr6 128414505 128414652 -21102385 - B1_Mus2 SINE Alu 0 147 1 1 1564 390 236 50 25 chr6 128414769 128414946 -21102091 - MT2A LTR ERVL -291 242 1 1 1564 988 269 93 64 chr6 128414946 128415007 -21102030 + MTE2b LTR MaLR 52 113 -266 1 1564 758 214 21 0 chr6 128415007 128415152 -21101885 - B1_Mur1 SINE Alu 0 149 2 1 1564 988 269 93 64 chr6 128415152 128415404 -21101633 + MTE2b LTR MaLR 114 374 -5 1 1564 650 235 45 129 chr6 128416233 128416528 -21100509 + RLTR12B LTR ERVK 42 313 -255 1 1564 183 80 0 0 chr6 128416535 128416560 -21100477 + (GGAGAA)n Simple_repeat Simple_repeat 5 29 0 1 1564 380 250 48 126 chr6 128416561 128416767 -21100270 + RLTR12B LTR ERVK 242 431 -97 1 1564 1595 52 0 15 chr6 128417012 128417208 -21099829 - B2_Mm1t SINE B2 0 193 1 1 1564 647 330 81 75 chr6 128417271 128417618 -21099419 - ORR1E LTR MaLR -2 357 9 1 1564 180 0 0 0 chr6 128417674 128417694 -21099343 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1564 479 162 10 0 chr6 128417694 128417793 -21099244 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 1564 180 111 0 0 chr6 128417864 128417891 -21099146 + (TATG)n Simple_repeat Simple_repeat 3 29 0 1 1564 299 194 164 0 chr6 128417961 128418028 -21099009 + B4A SINE B4 2 79 -213 1 1564 2045 102 18 88 chr6 128418033 128418376 -21098661 - ORR1A2 LTR MaLR -8 319 1 1 1564 230 333 0 0 chr6 128418376 128418434 -21098603 + ID_B1 SINE B4 74 131 -93 1 1564 412 273 11 0 chr6 128418432 128418520 -21098517 + B4A SINE B4 202 290 -2 1 1564 539 227 84 23 chr6 128418580 128418711 -21098326 + MTE2b LTR MaLR 18 156 -223 1 1564 209 33 33 0 chr6 128418997 128419027 -21098010 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1564 922 63 79 8 chr6 128419031 128419158 -21097879 - B1_Mus1 SINE Alu 0 148 13 1 1564 894 147 7 34 chr6 128419158 128419306 -21097731 - B1_Mur3 SINE Alu -3 146 3 1 1564 200 247 0 76 chr6 128419333 128419425 -21097612 + CT-rich Low_complexity Low_complexity 6 90 0 1 1564 204 40 0 0 chr6 128419567 128419592 -21097445 + (G)n Simple_repeat Simple_repeat 1 25 0 1 1564 1256 188 53 189 chr6 128419909 128420342 -21096695 + ORR1D1 LTR MaLR 1 374 0 1 1564 378 0 0 0 chr6 128421308 128421350 -21095687 + (GGAAA)n Simple_repeat Simple_repeat 2 43 0 1 1564 193 313 99 20 chr6 128421887 128421988 -21095049 + L2 LINE L2 2962 3070 -349 1 1564 2263 72 49 0 chr6 128422076 128422380 -21094657 - ORR1A2 LTR MaLR -8 319 1 1 1564 22 0 0 0 chr6 128422468 128422490 -21094547 + AT_rich Low_complexity Low_complexity 1 22 0 1 1564 506 133 131 10 chr6 128422574 128422673 -21094364 + MT2B LTR ERVL 1 111 -490 1 1564 1408 147 8 59 chr6 128423429 128423683 -21093354 + MT2B LTR ERVL 274 514 -87 1 1564 4169 27 68 0 chr6 128425056 128425542 -21091495 - MURVY-LTR LTR ERV1 0 519 1 1 1564 465 66 0 0 chr6 128425592 128425653 -21091384 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1564 474 204 0 0 chr6 128426325 128426428 -21090609 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 1564 417 243 71 45 chr6 128426950 128427105 -21089932 - MTEa LTR MaLR -57 322 164 1 1564 239 182 54 43 chr6 128427292 128427384 -21089653 - Lx6 LINE L1 -12 7448 7356 1 1564 1130 82 52 12 chr6 128427432 128427604 -21089433 - B2_Mm2 SINE B2 -11 184 6 1 1564 250 310 22 162 chr6 128428668 128428853 -21088184 - Arthur1A DNA Tip100 -15 162 4 1 1564 1000 41 6 146 chr6 128429488 128429659 -21087378 - B1_Mm SINE Alu 0 147 1 1 1564 1235 59 154 0 chr6 128430425 128430594 -21086443 + B2_Mm2 SINE B2 1 195 0 1 1564 2436 79 32 0 chr6 128432548 128432864 -21084173 - ORR1A2 LTR MaLR -1 326 1 1 1564 186 71 0 0 chr6 128433236 128433264 -21083773 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1564 1448 95 16 0 chr6 128433279 128433469 -21083568 - B2_Mm2 SINE B2 -1 194 2 1 1564 1595 62 0 0 chr6 128434132 128434324 -21082713 - B2_Mm1a SINE B2 0 193 2 1 1564 886 34 17 0 chr6 128434329 128434446 -21082591 - B1_Mus1 SINE Alu 0 148 30 1 1564 533 52 13 0 chr6 128434475 128434552 -21082485 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 1564 272 210 72 24 chr6 128434573 128434656 -21082381 - Lx8 LINE L1 -34 7439 7353 1 1564 847 164 0 7 chr6 128435937 128436072 -21080965 - B1_Mur4 SINE Alu -16 134 1 1 1564 1133 62 7 0 chr6 128436321 128436465 -21080572 - B1_Mm SINE Alu -1 146 2 1 1564 243 292 0 22 chr6 128436522 128436613 -21080424 + (TA)n Simple_repeat Simple_repeat 2 90 0 1 1564 225 0 0 0 chr6 128437607 128437632 -21079405 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 1 1564 1273 34 0 0 chr6 128437632 128437779 -21079258 - B1_Mm SINE Alu 0 147 1 1 1564 201 108 0 0 chr6 128438637 128438674 -21078363 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1564 431 212 8 71 chr6 128439303 128439430 -21077607 - PB1D9 SINE Alu 0 120 2 1 1564 567 262 46 17 chr6 128440275 128440450 -21076587 - B3A SINE B2 -16 182 3 1 1564 249 33 0 0 chr6 128442290 128442320 -21074717 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1564 231 36 0 0 chr6 128442523 128442551 -21074486 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1564 573 277 13 69 chr6 128442579 128442738 -21074299 - B4A SINE B4 -139 153 4 1 1564 402 389 70 28 chr6 128442772 128443198 -21073839 - L2a LINE L2 -3 3423 2980 1 1564 640 290 42 74 chr6 128443570 128443760 -21073277 + B4 SINE B4 2 185 -107 1 1564 649 227 121 0 chr6 128444888 128445020 -21072017 + RSINE1 SINE B4 4 151 -14 1 1564 248 253 82 71 chr6 128445523 128445621 -21071416 + B1F1 SINE Alu 1 99 -50 1 1564 504 0 0 0 chr6 128445624 128445680 -21071357 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1564 306 0 0 0 chr6 128445680 128445713 -21071324 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1564 302 0 26 0 chr6 128446176 128446214 -21070823 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 1 1564 334 340 0 0 chr6 128446297 128446394 -21070643 + CT-rich Low_complexity Low_complexity 2 98 0 1 1564 249 33 0 0 chr6 128446461 128446491 -21070546 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 1564 219 36 0 0 chr6 128446885 128446913 -21070124 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1564 1134 49 35 0 chr6 128446915 128447057 -21069980 - B1_Mus2 SINE Alu 0 147 1 1 1564 219 36 0 0 chr6 128447058 128447086 -21069951 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1564 1174 75 0 7 chr6 128447119 128447267 -21069770 - B1_Mus1 SINE Alu 0 148 2 1 1564 2482 248 151 14 chr6 128447408 128448207 -21068830 + RCHARR1 DNA MER1_type 64 972 -2 1 1564 2628 75 9 0 chr6 128449314 128449634 -21067403 + ORR1A2 LTR MaLR 1 323 -4 1 1564 789 41 0 0 chr6 128449638 128449735 -21067302 + (TTTC)n Simple_repeat Simple_repeat 3 99 0 1 1564 414 0 0 0 chr6 128449768 128449814 -21067223 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1 1564 941 97 90 0 chr6 128449814 128449958 -21067079 - B2_Mm1t SINE B2 -35 158 2 1 1565 1353 283 61 74 chr6 128450600 128451287 -21065750 + Lx8 LINE L1 5024 5710 -137 1 1565 348 24 0 0 chr6 128451287 128451328 -21065709 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1565 1353 283 61 74 chr6 128451328 128451350 -21065687 + Lx8 LINE L1 5711 5728 -119 1 1565 240 35 0 0 chr6 128451350 128451379 -21065658 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1 1565 1353 283 61 74 chr6 128451379 128451409 -21065628 + Lx8 LINE L1 5729 5759 -88 1 1565 875 45 381 0 chr6 128451409 128451543 -21065494 + B2_Mm1t SINE B2 1 185 -8 1 1565 1353 205 0 148 chr6 128451543 128451678 -21065359 + Lx8 LINE L1 5760 5906 -1567 1 1565 441 0 0 0 chr6 128451937 128451986 -21065051 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1565 927 257 27 22 chr6 128452570 128452793 -21064244 + ID_B1 SINE B4 1 224 0 1 1565 220 27 54 0 chr6 128453734 128453771 -21063266 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1565 1370 46 74 17 chr6 128453994 128454170 -21062867 - B2_Mm2 SINE B2 -9 186 1 1 1565 359 273 8 60 chr6 128454340 128454457 -21062580 - PB1D7 SINE Alu -9 111 1 1 1565 1780 31 0 0 chr6 128454474 128454667 -21062370 - B2_Mm1t SINE B2 0 193 1 1 1565 821 220 79 0 chr6 128455999 128456176 -21060861 + B3 SINE B2 1 191 -25 1 1565 369 0 0 0 chr6 128456202 128456243 -21060794 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1565 609 162 90 0 chr6 128456433 128456544 -21060493 + B1_Mur2 SINE Alu 1 121 -28 1 1565 1006 23 30 0 chr6 128456544 128456675 -21060362 + (GAAA)n Simple_repeat Simple_repeat 4 138 0 1 1565 218 293 17 0 chr6 128457008 128457066 -21059971 + L2c LINE L2 3327 3385 -2 1 1565 1041 140 39 16 chr6 128457076 128457258 -21059779 - B2_Mm2 SINE B2 -9 186 1 1 1565 336 102 0 0 chr6 128457724 128457773 -21059264 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1565 1190 283 89 36 chr6 128457787 128457986 -21059051 + L1MA5 LINE L1 5293 5515 -785 1 1565 1310 41 0 0 chr6 128457986 128458133 -21058904 + B1_Mus2 SINE Alu 1 147 0 1 1565 1242 263 45 17 chr6 128458133 128458541 -21058496 + L1MA5 LINE L1 5516 5932 -368 1 1565 22 35 0 0 chr6 128458678 128458707 -21058330 + AT_rich Low_complexity Low_complexity 1 29 0 1 1565 275 281 155 17 chr6 128458726 128458900 -21058137 + MLT1D-int LTR MaLR 216 413 -1076 1 1565 360 0 0 0 chr6 128458997 128459037 -21058000 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1565 378 368 53 67 chr6 128459111 128459452 -21057585 + MLT1D-int LTR MaLR 659 994 -377 1 1565 567 327 75 0 chr6 128459701 128459900 -21057137 + MLT1D LTR MaLR 2 215 -290 1 1565 462 18 0 0 chr6 128460291 128460346 -21056691 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 1 1565 5611 89 38 19 chr6 128460619 128461388 -21055649 + Lx LINE L1 5866 6648 -6 1 1565 1177 79 133 0 chr6 128461539 128461704 -21055333 - B2_Mm2 SINE B2 -8 187 1 1 1565 907 160 6 6 chr6 128462450 128462626 -21054411 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 1 1565 372 253 24 12 chr6 128462729 128462813 -21054224 - PB1D10 SINE Alu -29 88 4 1 1565 394 227 0 85 chr6 128463144 128463226 -21053811 + URR1A DNA MER1_type 1 75 -151 1 1565 623 116 0 0 chr6 128463251 128463346 -21053691 - BC1_Mm scRNA scRNA -57 95 1 1 1565 1135 201 34 0 chr6 128464147 128464351 -21052686 - B3 SINE B2 -5 211 1 1 1565 335 236 26 35 chr6 128464359 128464473 -21052564 - L1MA7 LINE L1 -2 6289 6177 1 1565 1403 188 88 11 chr6 128464521 128464806 -21052231 + MTD LTR MaLR 4 310 -109 1 1565 847 294 45 38 chr6 128465689 128465979 -21051058 + B4A SINE B4 1 292 0 1 1565 234 0 0 0 chr6 128466204 128466230 -21050807 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1565 183 100 0 0 chr6 128466651 128466681 -21050356 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1565 1389 128 5 18 chr6 128467493 128467715 -21049322 + URR1A DNA MER1_type 6 224 -2 1 1565 727 298 72 12 chr6 128467817 128468233 -21048804 - L1MA4A LINE L1 -388 5915 5477 1 1565 448 288 110 0 chr6 128468405 128468523 -21048514 + B1F1 SINE Alu 8 138 -11 1 1565 369 0 0 0 chr6 128468536 128468577 -21048460 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1565 854 208 126 11 chr6 128468841 128468964 -21048073 - B3 SINE B2 0 216 71 1 1565 360 0 0 0 chr6 128468964 128469004 -21048033 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1565 854 208 126 11 chr6 128469004 128469070 -21047967 - B3 SINE B2 -146 70 5 1 1565 224 319 88 15 chr6 128469196 128469333 -21047704 + L2 LINE L2 1280 1426 -1993 1 1565 932 118 13 0 chr6 128469766 128469919 -21047118 + (TTCC)n Simple_repeat Simple_repeat 2 156 0 1 1565 709 204 68 0 chr6 128469941 128470073 -21046964 - B1_Mur1 SINE Alu -8 141 1 1 1565 1104 203 41 0 chr6 128470120 128470317 -21046720 + B3 SINE B2 5 209 -7 1 1565 498 329 6 38 chr6 128470317 128470475 -21046562 + B3A SINE B2 29 181 -17 1 1565 190 235 38 38 chr6 128470866 128470919 -21046118 + MER5B DNA MER1_type 88 140 -38 1 1565 458 347 82 28 chr6 128471411 128471666 -21045371 + MLT2E LTR ERVL 99 367 -261 1 1565 319 253 139 0 chr6 128472423 128472502 -21044535 + 5S rRNA rRNA 3 92 -29 1 1565 931 47 8 8 chr6 128473294 128473423 -21043614 + L1Md_F2 LINE L1 6452 6580 -2 1 1565 374 286 9 35 chr6 128473448 128473564 -21043473 - PB1D10 SINE Alu 0 117 5 1 1565 832 255 42 11 chr6 128474470 128474660 -21042377 + B3A SINE B2 3 198 0 1 1565 1461 91 27 5 chr6 128474679 128474867 -21042170 + B2_Mm2 SINE B2 1 192 -3 1 1565 259 156 22 0 chr6 128475540 128475585 -21041452 + RMER15 LTR ERVL 6 51 -524 1 1565 362 0 133 0 chr6 128475585 128475683 -21041354 + (GGGA)n Simple_repeat Simple_repeat 4 114 0 1 1565 740 240 187 19 chr6 128475787 128476055 -21040982 + RMER15 LTR ERVL 234 546 -29 1 1565 462 36 0 0 chr6 128476065 128476121 -21040916 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1565 1305 41 0 0 chr6 128476422 128476568 -21040469 + B1_Mus1 SINE Alu 3 148 0 1 1565 493 236 28 0 chr6 128477199 128477305 -21039732 + RMER15 LTR ERVL 467 575 0 1 1565 361 129 14 14 chr6 128477379 128477450 -21039587 + CT-rich Low_complexity Low_complexity 2 72 0 1 1565 373 137 110 0 chr6 128477452 128477525 -21039512 - B1_Mur3 SINE Alu 0 149 69 1 1565 595 278 54 38 chr6 128477478 128477700 -21039337 - B4A SINE B4 -16 276 48 1 1565 185 0 40 0 chr6 128477756 128477781 -21039256 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1565 581 51 13 0 chr6 128477787 128477865 -21039172 - B1_Mus2 SINE Alu -1 146 68 1 1565 304 244 0 55 chr6 128477865 128477878 -21039159 - ID_B1 SINE B4 -2 222 137 1 1565 367 314 49 14 chr6 128478207 128478349 -21038688 + B1F SINE Alu 2 148 -1 1 1565 645 191 48 28 chr6 128478361 128478506 -21038531 + B1F2 SINE Alu 2 149 0 1 1565 867 45 0 0 chr6 128479871 128479981 -21037056 - B1_Mus2 SINE Alu 0 147 38 1 1565 1566 22 78 0 chr6 128480005 128480023 -21037014 - B2_Mm1a SINE B2 0 193 176 1 1565 243 0 0 0 chr6 128480023 128480050 -21036987 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1565 1566 22 78 0 chr6 128480050 128480210 -21036827 - B2_Mm1a SINE B2 -18 175 2 1 1565 236 281 83 72 chr6 128480342 128480522 -21036515 - Charlie2b DNA MER1_type -710 2072 1891 1 1565 995 152 0 6 chr6 128480686 128480865 -21036172 + CT-rich Low_complexity Low_complexity 1 178 0 1 1565 3756 15 2 0 chr6 128481520 128481915 -21035122 + MTA_Mm LTR MaLR 1 396 0 1 1565 1308 4 25 0 chr6 128482036 128482278 -21034759 + (TCTA)n Simple_repeat Simple_repeat 1 248 0 1 1565 340 295 130 15 chr6 128482974 128483105 -21033932 + RSINE1 SINE B4 3 148 -17 1 1565 945 253 103 38 chr6 128484037 128484378 -21032659 - L1_Mur3 LINE L1 -443 5437 5075 1 1565 283 231 52 62 chr6 128484384 128484481 -21032556 + L1_Mur3 LINE L1 4954 5049 -828 1 1565 576 253 51 64 chr6 128484483 128484727 -21032310 + RMER20B LTR ERVK 50 283 -233 1 1565 997 122 11 11 chr6 128484728 128484902 -21032135 + (CATATA)n Simple_repeat Simple_repeat 3 176 0 1 1565 696 188 0 0 chr6 128484902 128485040 -21031997 + (CA)n Simple_repeat Simple_repeat 1 138 0 1 1565 750 109 0 0 chr6 128485064 128485201 -21031836 + (TC)n Simple_repeat Simple_repeat 2 138 0 1 1565 405 157 11 46 chr6 128485247 128485334 -21031703 + RMER20B LTR ERVK 544 627 0 1 1565 3877 142 42 47 chr6 128485334 128486042 -21030995 - ORR1B1-int LTR MaLR -9 1500 796 1 1565 2213 102 45 60 chr6 128486064 128486398 -21030639 + ORR1A4 LTR MaLR 1 329 0 1 1565 1810 124 44 4 chr6 128486400 128486674 -21030363 + MTC LTR MaLR 1 285 -136 1 1565 360 0 0 0 chr6 128486966 128487006 -21030031 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1565 387 358 70 45 chr6 128487044 128487644 -21029393 + L2a LINE L2 2764 3402 -24 1 1565 378 0 0 0 chr6 128487991 128488033 -21029004 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 1 1565 1253 170 4 40 chr6 128488310 128488537 -21028500 + URR1B DNA MER1_type 1 219 -6 1 1565 399 171 0 0 chr6 128488795 128488871 -21028166 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 1565 631 207 70 79 chr6 128488896 128489111 -21027926 - Lx2B LINE L1 0 7000 6788 1 1565 1396 102 0 21 chr6 128489111 128489301 -21027736 - B2_Mm2 SINE B2 -9 186 1 1 1565 1216 55 0 40 chr6 128489325 128489477 -21027560 - B1_Mm SINE Alu 0 147 2 1 1565 492 18 0 0 chr6 128489864 128489921 -21027116 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 1 1565 357 24 0 0 chr6 128490078 128490120 -21026917 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1565 252 0 0 0 chr6 128490120 128490147 -21026890 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1565 580 307 47 30 chr6 128491418 128491653 -21025384 + L1M2 LINE L1 5575 5813 -499 1 1565 724 254 164 16 chr6 128491674 128491837 -21025200 + Lx8 LINE L1 7192 7377 -96 1 1565 1082 101 0 20 chr6 128491837 128492142 -21024895 + (TG)n Simple_repeat Simple_repeat 1 298 0 1 1565 724 254 164 16 chr6 128492142 128492217 -21024820 + Lx8 LINE L1 7378 7469 -4 1 1565 225 213 33 0 chr6 128492234 128492295 -21024742 + L1MA9 LINE L1 6162 6224 -88 1 1565 1046 37 15 15 chr6 128492295 128492420 -21024617 + B1_Mus1 SINE Alu 9 135 -13 1 1565 252 0 0 0 chr6 128492420 128492448 -21024589 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 1 1565 1003 206 85 10 chr6 128494540 128494741 -21022296 - B3 SINE B2 0 216 1 1 1565 774 183 243 0 chr6 128495969 128496138 -21020899 + B3 SINE B2 2 211 -5 1 1565 645 251 107 69 chr6 128496642 128496933 -21020104 + MLT1B LTR MaLR 87 388 -2 1 1565 970 282 32 18 chr6 128497682 128497964 -21019073 - B4 SINE B4 -2 290 5 1 1565 255 321 0 94 chr6 128498206 128498323 -21018714 - PB1D10 SINE Alu -8 109 4 1 1565 235 329 14 0 chr6 128498329 128498402 -21018635 + Charlie4z DNA MER1_type 1 74 -93 1 1565 1339 204 174 25 chr6 128499036 128499433 -21017604 + RMER5 LTR ERV1 68 523 -11 1 1565 542 117 17 51 chr6 128500580 128500697 -21016340 - Lx5 LINE L1 -1 7049 6937 1 1565 1293 295 58 17 chr6 128501469 128501938 -21015099 + Lx8 LINE L1 6968 7455 -18 2 1565 641 254 45 64 chr6 128502471 128502673 -21014364 + B3A SINE B2 1 198 0 3 1565 660 177 16 0 chr6 128503483 128503607 -21013430 + RSINE1 SINE B4 3 128 -37 4 1565 216 0 0 0 chr6 128503679 128503703 -21013334 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1565 260 308 0 0 chr6 128504840 128504918 -21012119 - ID4_ SINE ID -3 80 3 6 1565 958 150 0 16 chr6 128505525 128505708 -21011329 + CT-rich Low_complexity Low_complexity 1 180 0 7 1565 740 221 28 0 chr6 128505713 128505858 -21011179 - B1_Mur1 SINE Alu 0 149 1 8 1565 1686 104 27 17 chr6 128506730 128507024 -21010013 + Lx2A1 LINE L1 6712 7008 0 9 1565 785 217 38 29 chr6 128507137 128507346 -21009691 + B3 SINE B2 1 211 -5 1 1565 1080 223 5 0 chr6 128507926 128508141 -21008896 + B3 SINE B2 1 216 0 1 1565 261 0 0 0 chr6 128509121 128509150 -21007887 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1565 920 263 26 4 chr6 128509228 128509495 -21007542 - B4A SINE B4 -19 273 1 1 1565 871 43 0 25 chr6 128509532 128509652 -21007385 - B1_Mus1 SINE Alu 0 148 32 1 1565 405 305 30 22 chr6 128509980 128510114 -21006923 + B1F1 SINE Alu 1 135 -14 1 1565 251 226 0 46 chr6 128510142 128510207 -21006830 + ID_B1 SINE B4 161 222 -2 1 1565 282 157 0 56 chr6 128510158 128510212 -21006825 + PB1D7 SINE Alu 70 120 0 1 1565 1113 77 0 20 chr6 128510213 128510359 -21006678 + B1_Mur4 SINE Alu 2 144 -6 1 1565 305 24 24 0 chr6 128510362 128510404 -21006633 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1565 321 26 0 0 chr6 128510932 128510970 -21006067 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2 1565 217 250 154 15 chr6 128512877 128512942 -21004095 - ID_B1 SINE B4 -67 157 84 2 1565 338 271 146 67 chr6 128513143 128513321 -21003716 + L1MC4 LINE L1 1393 1584 -4631 2 1565 1396 80 32 5 chr6 128513411 128513600 -21003437 - B2_Mm2 SINE B2 0 195 2 2 1565 348 295 11 5 chr6 128513608 128513725 -21003312 - PB1D10 SINE Alu -20 128 14 2 1565 248 284 101 0 chr6 128513739 128513848 -21003189 + L1MC4 LINE L1 1635 1754 -4461 2 1565 340 113 0 19 chr6 128514107 128514161 -21002876 + B3 SINE B2 19 71 -145 2 1565 819 168 3 26 chr6 128514400 128514721 -21002316 + GA-rich Low_complexity Low_complexity 1 313 0 2 1565 3446 28 5 0 chr6 128515711 128516105 -21000932 + MTA_Mm LTR MaLR 1 396 0 2 1565 525 277 35 76 chr6 128516681 128516853 -21000184 + RSINE1 SINE B4 1 165 0 2 1565 1780 201 92 3 chr6 128517282 128517662 -20999375 + MTD LTR MaLR 2 415 -4 2 1565 318 208 40 53 chr6 128519088 128519164 -20997873 + RSINE1 SINE B4 26 100 -65 3 1565 360 238 11 3 chr6 128519289 128519379 -20997658 - PB1D10 SINE Alu -39 110 17 3 1565 1062 29 7 0 chr6 128519653 128519789 -20997248 - B1_Mus1 SINE Alu -1 147 11 3 1565 24 0 0 0 chr6 128522354 128522378 -20994659 + AT_rich Low_complexity Low_complexity 1 24 0 3 1565 207 0 0 0 chr6 128522631 128522654 -20994383 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1565 3162 79 78 46 chr6 128523144 128523647 -20993390 + MURVY-LTR LTR ERV1 1 519 0 3 1565 186 133 0 0 chr6 128523673 128523703 -20993334 + (TTA)n Simple_repeat Simple_repeat 2 31 0 3 1565 397 103 0 29 chr6 128523926 128523996 -20993041 - B2_Mm2 SINE B2 -125 70 3 3 1565 261 0 0 0 chr6 128524150 128524179 -20992858 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1565 183 129 0 0 chr6 128525824 128525855 -20991182 + (TGG)n Simple_repeat Simple_repeat 1 31 0 3 1565 1040 209 20 0 chr6 128526718 128526914 -20990123 + B3 SINE B2 1 200 -16 4 1565 312 27 0 0 chr6 128528185 128528222 -20988815 + (GAAA)n Simple_repeat Simple_repeat 1 37 0 4 1565 745 290 29 2 chr6 128528391 128528635 -20988402 - L1MA4A LINE L1 -188 5968 5721 4 1565 241 255 51 41 chr6 128529486 128529584 -20987453 + MLT1B LTR MaLR 246 344 -46 4 1565 286 345 73 13 chr6 128529674 128529824 -20987213 - MIR3 SINE MIR -46 162 4 4 1565 348 24 0 0 chr6 128532308 128532349 -20984688 + (CAT)n Simple_repeat Simple_repeat 2 42 0 4 1565 484 200 122 24 chr6 128532350 128532473 -20984564 - B1F SINE Alu -14 135 1 4 1565 205 29 0 56 chr6 128532540 128532576 -20984461 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1565 380 279 78 1 chr6 128532674 128532843 -20984194 + L1M2 LINE L1 5216 5408 -889 4 1565 621 218 115 7 chr6 128532858 128533006 -20984031 + B3 SINE B2 40 203 -13 4 1565 333 0 0 0 chr6 128533008 128533045 -20983992 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 5 1565 327 49 0 0 chr6 128533090 128533131 -20983906 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1565 567 153 0 0 chr6 128533123 128533221 -20983816 + GA-rich Low_complexity Low_complexity 2 99 0 5 1565 563 302 33 83 chr6 128533230 128533566 -20983471 + L1M2 LINE L1 5503 5821 -479 4 1565 234 62 0 0 chr6 128533786 128533818 -20983219 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 5 1565 204 282 0 27 chr6 128533822 128533895 -20983142 + GA-rich Low_complexity Low_complexity 4 74 0 5 1565 651 26 0 0 chr6 128535528 128535605 -20981432 + (GGAAA)n Simple_repeat Simple_repeat 3 79 0 5 1565 479 174 27 18 chr6 128536775 128536886 -20980151 - Lx4B LINE L1 -1 7057 6946 5 1565 576 0 0 0 chr6 128538869 128538933 -20978104 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1565 671 183 8 0 chr6 128538935 128539055 -20977982 - B1_Mur4 SINE Alu -29 121 1 5 1565 256 253 10 94 chr6 128538970 128539066 -20977971 - MT2B2 LTR ERVL -344 240 153 5 1565 360 0 0 0 chr6 128539763 128539803 -20977234 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1565 8290 65 7 0 chr6 128539912 128541483 -20975554 - L1_Mus1 LINE L1 -2 6565 4984 6 1565 248 310 43 17 chr6 128541537 128541572 -20975465 + PB1D9 SINE Alu 3 37 -83 6 1565 354 206 15 0 chr6 128541572 128541640 -20975397 + ID4_ SINE ID 2 70 -13 6 1565 248 310 43 17 chr6 128541640 128541719 -20975318 + PB1D9 SINE Alu 38 119 -1 6 1565 237 265 43 29 chr6 128541719 128541789 -20975248 + ID4 SINE ID 6 76 -7 6 1565 309 89 0 0 chr6 128541791 128541836 -20975201 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1565 311 269 55 18 chr6 128541993 128542103 -20974934 + PB1D7 SINE Alu 1 114 -6 6 1565 261 247 26 13 chr6 128542107 128542185 -20974852 + ID4_ SINE ID 1 79 -4 6 1565 252 0 0 0 chr6 128542629 128542657 -20974380 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1565 558 227 223 17 chr6 128542734 128542909 -20974128 + B3 SINE B2 1 211 -5 6 1565 373 53 62 74 chr6 128543061 128543142 -20973895 - B2_Mm2 SINE B2 0 195 116 7 1565 708 237 15 0 chr6 128543181 128543312 -20973725 + ETnERV2-int LTR ERVK 7070 7202 -204 7 1565 301 109 0 68 chr6 128543687 128543746 -20973291 + HAL1-3A_ME LINE L1 1968 2022 -836 7 1565 738 154 0 0 chr6 128543746 128543895 -20973142 + (CA)n Simple_repeat Simple_repeat 1 149 0 7 1565 273 204 211 70 chr6 128544677 128544824 -20972213 - B3 SINE B2 -32 163 2 7 1565 498 219 0 0 chr6 128545001 128545106 -20971931 + B1F SINE Alu 9 113 -36 7 1565 307 277 23 47 chr6 128545164 128545311 -20971726 - L1MC4a LINE L1 -1440 6602 6449 7 1565 219 220 17 17 chr6 128545506 128545566 -20971471 + GA-rich Low_complexity Low_complexity 1 60 0 7 1565 293 275 36 27 chr6 128545585 128545697 -20971340 - LTR40b LTR ERVL -5 457 345 7 1565 3175 86 5 7 chr6 128545790 128546224 -20970813 + Lx3B LINE L1 6539 6971 -2 7 1565 353 115 0 16 chr6 128546319 128546381 -20970656 + Lx2B LINE L1 6935 6995 -5 8 1565 610 152 83 33 chr6 128546642 128546784 -20970253 + B1_Mus2 SINE Alu 2 150 0 8 1565 221 0 0 33 chr6 128547584 128547614 -20969423 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1565 468 274 64 0 chr6 128548167 128548324 -20968713 - L1MB1 LINE L1 -1 6188 6022 8 1565 641 205 0 0 chr6 128548428 128548540 -20968497 + B3 SINE B2 2 113 -103 8 1565 857 168 21 0 chr6 128548563 128548706 -20968331 + B1_Mur2 SINE Alu 3 148 -1 8 1565 348 24 0 0 chr6 128548846 128548887 -20968150 + (CAGGG)n Simple_repeat Simple_repeat 5 45 0 8 1565 894 68 0 0 chr6 128549032 128549150 -20967887 + (TC)n Simple_repeat Simple_repeat 1 118 0 8 1565 454 185 127 18 chr6 128549701 128549811 -20967226 - B3 SINE B2 0 216 95 8 1565 1299 243 52 77 chr6 128549810 128550320 -20966717 - MT2B LTR ERVL -8 593 1 8 1565 294 258 0 0 chr6 128550320 128550385 -20966652 - B3 SINE B2 -117 99 35 8 1565 496 280 8 8 chr6 128550579 128550705 -20966332 + ID_B1 SINE B4 84 209 -15 9 1565 399 127 0 0 chr6 128551069 128551132 -20965905 + (GGGA)n Simple_repeat Simple_repeat 2 64 0 9 1565 3033 60 50 0 chr6 128551227 128551608 -20965429 + MTB LTR MaLR 1 400 0 9 1565 503 303 148 34 chr6 128552197 128552494 -20964543 - Lx8 LINE L1 -179 7294 6964 9 1565 1024 261 147 13 chr6 128552817 128553287 -20963750 - Lx8 LINE L1 -526 6947 6415 9 1565 509 217 78 21 chr6 128553323 128553464 -20963573 - Lx8 LINE L1 -1196 6277 6129 9 1565 1157 36 0 7 chr6 128553732 128553871 -20963166 + B1_Mm SINE Alu 2 139 -8 9 1565 223 28 56 0 chr6 128553871 128553907 -20963130 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 9 1565 1208 61 0 0 chr6 128554286 128554434 -20962603 - B1_Mus1 SINE Alu 0 148 1 9 1565 27 0 0 0 chr6 128554437 128554464 -20962573 + AT_rich Low_complexity Low_complexity 1 27 0 9 1565 223 263 105 0 chr6 128554872 128554929 -20962108 + MIR SINE MIR 36 98 -170 9 1565 946 141 0 20 chr6 128555086 128555238 -20961799 + B1_Mur4 SINE Alu 2 150 0 9 1565 366 272 74 59 chr6 128555343 128555546 -20961491 + L1MA6 LINE L1 6030 6235 -65 1 1565 750 89 0 0 chr6 128555637 128555749 -20961288 + (TG)n Simple_repeat Simple_repeat 2 113 0 1 1565 287 337 21 0 chr6 128555750 128555845 -20961192 - B3A SINE B2 -47 151 55 1 1565 1865 245 89 14 chr6 128556222 128556718 -20960319 + Lx8 LINE L1 6742 7274 -199 1 1565 2458 122 63 10 chr6 128557462 128557861 -20959176 + MTC LTR MaLR 2 421 0 1 1565 1274 217 68 3 chr6 128558862 128559158 -20957879 - ORR1D2 LTR MaLR -4 366 52 1 1565 290 234 13 0 chr6 128559168 128559245 -20957792 - PB1D10 SINE Alu -35 82 5 1 1565 412 223 21 7 chr6 128559658 128559781 -20957256 + B3A SINE B2 4 125 -91 1 1565 708 239 83 6 chr6 128560220 128560401 -20956636 + B3A SINE B2 4 198 0 1 1565 1462 82 5 20 chr6 128562036 128562234 -20954803 + B2_Mm2 SINE B2 1 195 0 1 1565 1467 157 92 0 chr6 128562360 128562653 -20954384 + IAPLTR4_I LTR ERVK 1 320 -12 1 1565 5803 71 35 12 chr6 128562653 128563486 -20953551 + IAPLTR4_I LTR ERVK 11 952 -6629 1 1565 1532 200 100 49 chr6 128563596 128564076 -20952961 + RMER16-int LTR ERVK 251 820 -4586 1 1565 385 283 88 0 chr6 128564080 128564193 -20952844 + RMER16-int LTR ERVK 938 1060 -5077 1 1565 668 229 374 25 chr6 128564206 128564428 -20952609 + ETnERV2-int LTR ERVK 2454 2753 -4653 1 1565 2149 132 107 3 chr6 128564472 128565061 -20951976 + ETnERV2-int LTR ERVK 3567 4271 -3135 1 1565 486 176 21 35 chr6 128565066 128565190 -20951847 + MMETn-int LTR ERVK 2357 2464 -2380 1 1565 784 118 35 49 chr6 128565202 128565345 -20951692 + IAPEY3-int LTR ERVK 4530 4670 -2911 1 1565 3439 83 0 16 chr6 128565600 128566050 -20950987 + IAPEY3-int LTR ERVK 5203 5645 -1936 1 1565 3611 77 0 0 chr6 128566038 128566492 -20950545 + IAPEY3-int LTR ERVK 5761 6214 -1367 1 1565 6902 64 50 21 chr6 128566482 128567393 -20949644 + IAPEY3-int LTR ERVK 6743 7680 0 1 1565 1536 140 92 0 chr6 128567394 128567686 -20949351 + IAPEY3_LTR LTR ERVK 2 320 -12 1 1565 439 94 71 0 chr6 128567694 128567779 -20949258 + Lx4A LINE L1 6961 7051 -7 1 1565 194 0 39 0 chr6 128567779 128567805 -20949232 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1565 453 66 0 0 chr6 128567864 128567925 -20949112 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1 1565 221 347 113 40 chr6 128568879 128569056 -20947981 + MIR SINE MIR 2 191 -71 1 1565 723 273 110 44 chr6 128569651 128570061 -20946976 - RLTR28B LTR ERVL -42 439 3 1 1565 255 241 71 60 chr6 128570951 128571035 -20946002 - Tigger7 DNA MER2_type -3 2488 2404 1 1565 603 203 24 16 chr6 128571149 128571274 -20945763 - ID_B1 SINE B4 -7 217 92 1 1565 1562 284 9 12 chr6 128571285 128571709 -20945328 + Lx8 LINE L1 6905 7327 -146 1 1565 1647 32 0 0 chr6 128571919 128572105 -20944932 - B2_Mm1a SINE B2 -6 187 2 1 1565 2425 229 34 7 chr6 128573029 128573559 -20943478 - Lx6 LINE L1 -2 7458 6557 1 1565 287 79 0 0 chr6 128573528 128573566 -20943471 - Lx6 LINE L1 -579 6881 6844 1 1565 3043 47 3 3 chr6 128573653 128574018 -20943019 - RLTR10B2 LTR ERVK 0 365 1 1 1565 227 333 0 0 chr6 128574832 128574895 -20942142 - ID4 SINE ID 0 83 21 1 1565 873 184 0 13 chr6 128576108 128576257 -20940780 + B1_Mur3 SINE Alu 1 147 -2 1 1565 377 274 44 52 chr6 128576658 128576793 -20940244 + RSINE1 SINE B4 11 144 -21 1 1565 279 258 146 0 chr6 128576872 128576961 -20940076 + L1M3 LINE L1 4007 4108 -2032 1 1565 800 298 82 3 chr6 128577057 128577374 -20939663 - MLT1B LTR MaLR 0 390 49 1 1565 390 42 0 0 chr6 128577414 128577462 -20939575 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1565 372 324 0 0 chr6 128577480 128577582 -20939455 - RSINE1 SINE B4 -53 112 11 1 1565 4403 113 40 1 chr6 128578264 128578917 -20938120 + RLTR33 LTR ERVK 1 678 0 1 1565 1273 56 6 6 chr6 128579085 128579265 -20937772 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1565 198 103 0 0 chr6 128580887 128580916 -20936121 + (GGA)n Simple_repeat Simple_repeat 1 29 0 1 1566 453 231 56 0 chr6 128582630 128582738 -20934299 - B1_Mur2 SINE Alu -34 115 2 1 1566 297 203 108 0 chr6 128582891 128582965 -20934072 - B3 SINE B2 0 216 135 1 1566 3816 79 15 0 chr6 128582965 128583483 -20933554 + MusHAL1 LINE L1 2130 2655 -57 1 1566 254 50 0 24 chr6 128583572 128583613 -20933424 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1566 1265 27 0 0 chr6 128583614 128583760 -20933277 - B1_Mm SINE Alu 0 147 2 1 1566 264 164 29 29 chr6 128583840 128583909 -20933128 + (TTTG)n Simple_repeat Simple_repeat 2 70 0 1 1566 13512 142 26 28 chr6 128584908 128587342 -20929695 - L1_Mur2 LINE L1 -1583 4294 1865 1 1566 288 279 0 0 chr6 128587376 128587444 -20929593 - L1VL4 LINE L1 -5587 715 648 1 1566 534 271 9 2 chr6 128587476 128587610 -20929427 + B1_Mur1 SINE Alu 14 147 0 1 1566 733 244 53 5 chr6 128587674 128587880 -20929157 + B3 SINE B2 1 216 0 1 1566 380 181 56 129 chr6 128587969 128588147 -20928890 + RLTR31_Mur LTR ERVK 1 165 -388 1 1566 708 47 84 0 chr6 128588147 128588254 -20928783 + LTRIS5 LTR ERV1 1 116 -331 1 1566 1091 144 27 18 chr6 128588251 128588470 -20928567 + LTRIS5 LTR ERV1 227 447 0 1 1566 816 238 7 68 chr6 128588470 128588749 -20928288 + RLTR31_Mur LTR ERVK 162 423 -130 1 1566 3407 179 44 54 chr6 128588898 128589745 -20927292 + RLTR21 LTR ERVK 353 1190 -382 1 1566 896 108 6 0 chr6 128589876 128590033 -20927004 + (GA)n Simple_repeat Simple_repeat 1 158 0 1 1566 1273 125 5 0 chr6 128590246 128590430 -20926607 - B2_Mm1t SINE B2 -7 186 2 1 1566 1066 289 19 7 chr6 128590823 128591250 -20925787 - Lx9 LINE L1 -1674 5970 5539 1 1566 1484 263 31 23 chr6 128591403 128591882 -20925155 - RLTR16 LTR ERVK -22 483 1 1 1566 660 173 23 38 chr6 128591921 128592053 -20924984 + B1_Mur2 SINE Alu 13 142 -7 1 1566 315 0 0 0 chr6 128592057 128592092 -20924945 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1566 23 0 0 0 chr6 128592092 128592115 -20924922 + AT_rich Low_complexity Low_complexity 1 23 0 1 1566 273 319 10 21 chr6 128592361 128592457 -20924580 + ID_B1 SINE B4 67 161 -63 1 1566 291 299 0 0 chr6 128592381 128592458 -20924579 + B1_Mus2 SINE Alu 6 82 -65 1 1566 198 0 0 0 chr6 128594019 128594041 -20922996 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 1 1566 204 40 0 0 chr6 128594400 128594425 -20922612 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1566 2181 63 36 0 chr6 128594557 128594858 -20922179 - RLTR13B1 LTR ERVK 0 893 582 1 1566 3203 131 39 62 chr6 128597131 128597822 -20919215 - RLTR13B4 LTR ERVK -316 667 1 1 1566 278 214 71 0 chr6 128598081 128598151 -20918886 + RLTR19-int LTR ERVK 2049 2123 -3399 1 1566 447 306 38 24 chr6 128598140 128598381 -20918656 + RLTR19-int LTR ERVK 5593 5784 -766 1 1566 565 215 84 103 chr6 128599139 128599527 -20917510 + RLTR19-int LTR ERVK 2667 3037 -3100 1 1566 1065 143 184 9 chr6 128600335 128600547 -20916490 + RMER19B LTR ERVK 555 803 -99 1 1566 387 217 24 82 chr6 128600552 128600747 -20916290 + Lx4B LINE L1 6956 7058 0 1 1566 6239 98 15 14 chr6 128600848 128601129 -20915908 - Lx2 LINE L1 0 6997 6714 1 1566 3510 49 34 79 chr6 128601129 128601634 -20915403 - RLTR45 LTR ERVK 0 482 1 1 1566 6239 98 15 14 chr6 128601634 128602241 -20914796 - Lx2 LINE L1 -284 6713 6108 1 1566 306 0 0 0 chr6 128602556 128602590 -20914447 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1566 2740 34 0 3 chr6 128603305 128603628 -20913409 - RLTRETN_Mm LTR ERVK 0 322 1 1 1566 10568 51 3 18 chr6 128603628 128604955 -20912082 - MMETn-int LTR ERVK 0 4844 3538 1 1566 236 161 172 31 chr6 128604996 128605060 -20911977 - tRNA-Ala-GCY_ tRNA tRNA -2 73 1 1 1566 616 323 58 39 chr6 128606263 128606575 -20910462 - Tigger7 DNA MER2_type -2141 350 33 1 1566 700 252 35 15 chr6 128608391 128608588 -20908449 - B3 SINE B2 -14 202 2 1 1566 361 240 105 62 chr6 128609115 128609334 -20907703 - L1MA7 LINE L1 -351 5940 5722 1 1566 273 330 83 17 chr6 128609522 128609642 -20907395 + RMER10B LTR ERVL 271 398 0 1 1566 3491 138 14 44 chr6 128609805 128610470 -20906567 - Lx2B LINE L1 -623 6377 5783 1 1566 876 63 158 0 chr6 128610470 128610597 -20906440 - B1_Mus1 SINE Alu 0 148 2 1 1566 2883 173 17 111 chr6 128610597 128611073 -20905964 - Lx2B LINE L1 -93 5784 5304 1 1566 242 232 159 0 chr6 128611074 128611143 -20905894 - L1VL2 LINE L1 -6102 233 154 1 1566 1376 229 96 14 chr6 128611116 128611470 -20905567 - L1VL2 LINE L1 -5844 491 109 1 1566 430 322 14 7 chr6 128611948 128612092 -20904945 + B1_Mur1 SINE Alu 2 146 -3 1 1566 450 0 0 0 chr6 128612883 128612933 -20904104 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1566 665 296 82 17 chr6 128613599 128613912 -20903125 - L1MD LINE L1 -1802 4344 4005 1 1566 2029 212 24 5 chr6 128613912 128614324 -20902713 - MTC LTR MaLR -1 420 1 1 1566 665 296 82 17 chr6 128614324 128614474 -20902563 - L1MD LINE L1 -2142 4004 3851 1 1566 281 165 0 58 chr6 128614715 128614818 -20902219 + (TA)n Simple_repeat Simple_repeat 1 97 0 1 1566 876 218 7 101 chr6 128614818 128615094 -20901943 + MMETn-int LTR ERVK 1 250 -4594 1 1566 658 71 0 4 chr6 128615120 128615210 -20901827 + L1Md_F2 LINE L1 5512 5615 -682 1 1566 8369 37 1 3 chr6 128615210 128616196 -20900841 + L1Md_F2 LINE L1 5587 6570 -12 1 1566 3704 176 29 88 chr6 128616213 128617164 -20899873 + MMETn-int LTR ERVK 269 1163 -3681 1 1566 572 272 5 70 chr6 128617177 128617363 -20899674 + ETnERV2-int LTR ERVK 2435 2608 -4798 1 1566 1818 145 52 66 chr6 128617363 128617803 -20899234 + ETnERV2-int LTR ERVK 3055 3441 -3965 1 1566 4138 187 61 26 chr6 128618018 128619286 -20897751 + ETnERV2-int LTR ERVK 2394 4085 -3321 1 1566 1104 183 29 37 chr6 128619300 128619787 -20897250 + MMETn-int LTR ERVK 2982 3728 -1116 1 1566 420 147 0 13 chr6 128619975 128620051 -20896986 + MMETn-int LTR ERVK 7331 7405 -1 1 1566 1265 165 102 120 chr6 128620051 128620451 -20896586 + RLTR9C LTR ERVK 1 393 0 1 1566 226 109 0 72 chr6 128620452 128620521 -20896516 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1566 705 197 0 0 chr6 128621469 128621601 -20895436 - B1_Mus1 SINE Alu -6 142 11 1 1566 1114 88 7 0 chr6 128621962 128622109 -20894928 - B1_Mus1 SINE Alu 0 148 1 1 1566 249 33 0 0 chr6 128622278 128622308 -20894729 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1566 672 271 144 26 chr6 128622710 128623074 -20893963 - L1_Rod LINE L1 -10 5837 5456 1 1566 267 220 0 63 chr6 128623077 128623140 -20893897 - B1_Mus1 SINE Alu -88 60 2 1 1566 977 94 0 7 chr6 128623156 128623295 -20893742 - B1_Mus2 SINE Alu 0 147 10 1 1566 546 16 0 0 chr6 128623339 128623402 -20893635 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1566 391 304 16 0 chr6 128623645 128623770 -20893267 + B1_Mur1 SINE Alu 23 149 0 1 1566 180 111 0 0 chr6 128623773 128623800 -20893237 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1566 285 29 0 0 chr6 128625756 128625790 -20891247 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1566 1568 167 3 39 chr6 128626110 128626416 -20890621 - RMER17B LTR ERVK -30 928 634 1 1566 917 188 137 33 chr6 128626532 128626802 -20890235 - L1_Mur3 LINE L1 -772 5108 4811 1 1566 686 196 251 0 chr6 128626802 128626965 -20890072 + B3 SINE B2 1 204 -12 1 1566 867 86 129 7 chr6 128626965 128627105 -20889932 + B2_Mm2 SINE B2 5 161 -34 2 1566 405 0 0 0 chr6 128627105 128627150 -20889887 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2 1566 4474 181 146 32 chr6 128627248 128628705 -20888332 - L1_Mur3 LINE L1 -1052 4825 3077 1 1566 541 283 0 0 chr6 128628716 128628854 -20888183 - RLTR14 LTR ERV1 -3 379 242 2 1566 186 43 0 0 chr6 128628854 128628877 -20888160 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 2 1566 4972 124 30 8 chr6 128628892 128629637 -20887400 + L1VL4 LINE L1 8 768 -5534 2 1566 1863 201 12 29 chr6 128629683 128630099 -20886938 + L1Md_F LINE L1 570 978 -5541 2 1566 356 192 40 7 chr6 128630113 128630204 -20886833 - L1MB3 LINE L1 -277 5903 5813 2 1566 38679 31 1 1 chr6 128630206 128637687 -20879350 - L1Md_T LINE L1 0 6585 1 2 1566 431 121 0 0 chr6 128637689 128637755 -20879282 + MusHAL1 LINE L1 510 575 -2779 2 1566 1119 153 69 0 chr6 128637755 128637971 -20879066 + ETnERV2-int LTR ERVK 1961 2191 -5215 2 1566 334 288 25 8 chr6 128637956 128638075 -20878962 + ETnERV2-int LTR ERVK 1057 1177 -2137 2 1566 4872 203 97 55 chr6 128638071 128639489 -20877548 + ETnERV2-int LTR ERVK 1415 3504 -3902 2 1566 2391 59 18 39 chr6 128639489 128639823 -20877214 + IAPLTR2b LTR ERVK 1 327 0 2 1566 1246 76 10 102 chr6 128639824 128640030 -20877007 + IAPEz-int LTR ERVK 9 195 -6286 2 1566 228 250 0 0 chr6 128640039 128640083 -20876954 + RLTR27 LTR ERVK 232 275 -34 2 1566 10249 55 45 35 chr6 128640086 128641456 -20875581 + IAPEz-int LTR ERVK 94 1477 -5004 2 1566 1907 89 0 0 chr6 128641457 128641703 -20875334 + IAPEz-int LTR ERVK 2252 2497 -5183 2 1566 14940 55 9 3 chr6 128641702 128643516 -20873521 + IAPEz-int LTR ERVK 4656 6479 -2 2 1566 2380 62 18 39 chr6 128643518 128643852 -20873185 + IAPLTR2b LTR ERVK 1 327 0 2 1566 1511 144 15 38 chr6 128643852 128644119 -20872918 + IAPEz-int LTR ERVK 2457 2717 -2689 2 1566 24295 135 42 0 chr6 128644136 128650215 -20866822 - L1_Mus2 LINE L1 0 6566 217 2 1566 1235 177 25 0 chr6 128650213 128650450 -20866587 - L1Md_F LINE L1 -5649 870 628 2 1566 286 214 70 26 chr6 128650422 128650539 -20866498 - L1Md_F LINE L1 -6007 512 412 2 1566 461 290 52 34 chr6 128650532 128650834 -20866203 - L1VL1 LINE L1 -5902 516 92 2 1566 304 40 40 0 chr6 128650875 128650925 -20866112 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 2 1566 743 170 60 85 chr6 128650934 128651133 -20865904 + RLTR9A LTR ERVK 1 194 -174 2 1566 3682 51 0 2 chr6 128651178 128651627 -20865410 + L1Md_F3 LINE L1 6123 6570 -14 2 1566 22 0 0 0 chr6 128651740 128651762 -20865275 + AT_rich Low_complexity Low_complexity 1 22 0 2 1566 4246 204 22 125 chr6 128651985 128653003 -20864034 + RMER1B Other Other 1 913 -153 2 1566 601 161 8 39 chr6 128653016 128653145 -20863892 + RLTR9A LTR ERVK 244 368 0 2 1566 1606 199 27 68 chr6 128653213 128653654 -20863383 - RLTR28 LTR ERVL -2 522 100 2 1566 207 0 0 0 chr6 128653976 128653999 -20863038 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1566 687 233 99 82 chr6 128654609 128655044 -20861993 + RMER2 LTR ERV1 1 540 -27 2 1566 460 285 29 0 chr6 128655190 128655327 -20861710 + B3 SINE B2 73 213 -3 2 1566 207 88 0 0 chr6 128655365 128655399 -20861638 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 2 1566 242 188 0 30 chr6 128655522 128655588 -20861449 + T-rich Low_complexity Low_complexity 4 67 0 2 1566 212 0 36 0 chr6 128655588 128655616 -20861421 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1566 21 36 0 0 chr6 128655690 128655718 -20861319 + AT_rich Low_complexity Low_complexity 1 28 0 2 1566 197 59 59 0 chr6 128655860 128655894 -20861143 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 2 1566 210 286 77 13 chr6 128657861 128657939 -20859098 - B4A SINE B4 -152 140 58 2 1566 452 81 14 0 chr6 128658230 128658304 -20858733 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1566 673 274 46 0 chr6 128658450 128658625 -20858412 + B3 SINE B2 29 211 -5 2 1566 4529 50 0 0 chr6 128658663 128659206 -20857831 + L1Md_F2 LINE L1 6040 6582 0 2 1566 275 250 0 0 chr6 128659310 128659382 -20857655 - L1_Mur1 LINE L1 -2890 2996 2925 2 1566 2760 12 6 0 chr6 128659389 128659729 -20857308 + MTA_Mm LTR MaLR 1 342 -54 2 1566 220 118 37 56 chr6 128660473 128660527 -20856510 + T-rich Low_complexity Low_complexity 3 55 0 2 1566 7996 63 1 5 chr6 128660944 128661979 -20855058 - L1_Mus1 LINE L1 -1 6566 5536 2 1566 747 218 7 20 chr6 128662412 128662562 -20854475 - B1_Mur3 SINE Alu -1 148 1 2 1566 2321 182 35 14 chr6 128662698 128663182 -20853855 + RLTR19 LTR ERVK 1 494 -5 2 1566 475 159 0 15 chr6 128663867 128664001 -20853036 + GA-rich Low_complexity Low_complexity 2 133 0 2 1566 388 288 417 35 chr6 128664001 128664229 -20852808 - Tigger7 DNA MER2_type -1895 596 282 2 1566 1690 131 70 75 chr6 128664238 128664569 -20852468 + ORR1A4 LTR MaLR 1 329 0 2 1566 447 335 13 7 chr6 128664593 128664746 -20852291 - Tigger7 DNA MER2_type -2333 158 5 2 1566 669 261 52 33 chr6 128665056 128665326 -20851711 - RLTR16 LTR ERVK -207 298 24 2 1566 4395 210 16 11 chr6 128665359 128666306 -20850731 + RMER12B LTR ERVK 1 952 -452 2 1566 694 259 131 45 chr6 128666615 128666951 -20850086 - RMER13A LTR ERVK -396 464 100 2 1566 965 177 25 21 chr6 128667049 128667286 -20849751 + RMER12B LTR ERVK 951 1188 -216 2 1566 477 0 0 0 chr6 128667300 128667353 -20849684 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1566 280 276 6 162 chr6 128667371 128667531 -20849506 + RMER12B LTR ERVK 1341 1572 0 2 1566 808 214 17 28 chr6 128667571 128667697 -20849340 - RLTR18B LTR ERVK -6 506 382 2 1566 3465 48 122 4 chr6 128667697 128668155 -20848882 + RLTR1B LTR ERV1 1 512 0 2 1566 808 214 17 28 chr6 128668155 128668206 -20848831 - RLTR18B LTR ERVK -131 381 331 2 1566 738 278 88 51 chr6 128668233 128668377 -20848660 + RLTR12B LTR ERVK 47 187 -341 2 1566 2915 9 0 0 chr6 128668377 128668699 -20848338 + RLTRETN_Mm LTR ERVK 1 322 0 2 1566 738 278 88 51 chr6 128668699 128668963 -20848074 + RLTR12B LTR ERVK 188 470 -58 2 1566 1281 182 133 13 chr6 128669001 128669301 -20847736 - RLTR18B LTR ERVK -176 336 1 2 1566 328 375 16 0 chr6 128669720 128669848 -20847189 - ID_B1 SINE B4 -7 217 88 2 1566 1210 61 0 0 chr6 128669975 128670122 -20846915 + B1_Mus2 SINE Alu 1 147 0 2 1566 202 161 32 0 chr6 128670227 128670267 -20846770 + T-rich Low_complexity Low_complexity 25 66 0 2 1566 1642 32 11 0 chr6 128670267 128670457 -20846580 - B2_Mm1a SINE B2 0 193 2 2 1566 202 161 32 0 chr6 128670457 128670478 -20846559 + T-rich Low_complexity Low_complexity 4 24 0 2 1566 437 249 99 17 chr6 128670758 128670930 -20846107 + MER2 DNA MER2_type 93 278 -67 2 1566 1810 155 123 37 chr6 128671248 128671623 -20845414 - MTB_Mm LTR MaLR 0 407 1 2 1566 217 328 65 16 chr6 128671842 128671966 -20845071 + MIRb SINE MIR 131 260 -8 2 1566 207 88 0 0 chr6 128672706 128672740 -20844297 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 2 1566 423 0 0 0 chr6 128675134 128675181 -20841856 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1566 1669 26 5 0 chr6 128675779 128675969 -20841068 + B2_Mm1t SINE B2 2 192 -1 2 1566 243 0 0 0 chr6 128675997 128676024 -20841013 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1566 8961 177 70 6 chr6 128676551 128677647 -20839390 + L1_Mur3 LINE L1 868 2057 -3820 2 1566 336 24 0 0 chr6 128677647 128677688 -20839349 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1566 8961 158 26 4 chr6 128677688 128678553 -20838484 + L1_Mur3 LINE L1 2058 2934 -2943 2 1566 428 181 36 0 chr6 128678673 128678756 -20838281 + ORR1D1 LTR MaLR 1 86 -288 2 1566 451 260 73 27 chr6 128678760 128678840 -20838197 - RLTR20D LTR ERVK -5 563 474 2 1566 228 111 0 0 chr6 128678840 128678876 -20838161 + (CAA)n Simple_repeat Simple_repeat 3 38 0 2 1566 450 0 0 0 chr6 128678883 128678933 -20838104 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1566 451 260 73 27 chr6 128678933 128678994 -20838043 - RLTR20D LTR ERVK -102 466 407 2 1566 462 243 197 37 chr6 128678983 128679227 -20837810 - RLTR20D LTR ERVK -285 283 1 2 1566 6584 139 46 8 chr6 128679271 128680519 -20836518 - MYSERV16_I-int LTR ERVK -21 2305 883 2 1566 1392 204 50 4 chr6 128680543 128680823 -20836214 + ORR1D1 LTR MaLR 82 374 0 2 1566 561 205 0 0 chr6 128680824 128680941 -20836096 + ORR1D1-int LTR MaLR 2 118 -1252 2 1566 649 285 134 7 chr6 128680939 128681222 -20835815 + ORR1D1 LTR MaLR 53 371 -3 2 1566 180 0 0 0 chr6 128681349 128681369 -20835668 + (CAAAAA)n Simple_repeat Simple_repeat 1 20 0 2 1566 373 290 101 36 chr6 128681377 128681624 -20835413 - ORR1E LTR MaLR 0 359 97 2 1566 277 269 47 28 chr6 128681691 128681798 -20835239 - ORR1E LTR MaLR -270 109 1 2 1566 401 264 54 8 chr6 128681884 128682014 -20835023 + L1MCa LINE L1 1 136 -6372 2 1566 302 303 25 135 chr6 128682792 128682911 -20834126 + L1M3 LINE L1 5424 5525 -646 2 1566 3283 48 177 2 chr6 128682911 128683347 -20833690 + RLTR1B LTR ERV1 1 512 0 2 1566 302 303 25 135 chr6 128683347 128683509 -20833528 + L1M3 LINE L1 5526 5674 -497 2 1566 583 308 26 26 chr6 128683575 128683802 -20833235 + Lx8 LINE L1 6733 6959 -514 2 1566 794 292 123 69 chr6 128684632 128684825 -20832212 - L1MB1 LINE L1 -87 6081 5878 2 1566 571 248 146 51 chr6 128684825 128685161 -20831876 - RLTR9A LTR ERVK 0 368 1 2 1566 794 292 123 69 chr6 128685161 128685750 -20831287 - L1MB1 LINE L1 -291 5877 5257 2 1566 3217 41 26 3 chr6 128686927 128687314 -20829723 - MTA_Mm LTR MaLR 0 396 1 2 1566 230 250 15 15 chr6 128687398 128687463 -20829574 + CT-rich Low_complexity Low_complexity 2 66 0 2 1566 688 68 19 0 chr6 128688117 128688220 -20828817 + (TC)n Simple_repeat Simple_repeat 1 105 0 2 1566 234 91 0 0 chr6 128688641 128688674 -20828363 + (CTG)n Simple_repeat Simple_repeat 2 34 0 2 1566 905 299 30 49 chr6 128689195 128689561 -20827476 + RodERV21-int LTR ERV1 730 1088 -3903 2 1566 6032 255 29 32 chr6 128689628 128691246 -20825791 + RodERV21-int LTR ERV1 1106 2718 -2273 2 1566 706 310 42 55 chr6 128691365 128691860 -20825177 + RodERV21-int LTR ERV1 3586 4074 -3017 2 1566 276 374 18 18 chr6 128692100 128692326 -20824711 + MER52-int LTR ERV1 3470 3695 -3906 2 1566 331 317 38 38 chr6 128692644 128693048 -20823989 + MER52-int LTR ERV1 4664 5103 -1988 2 1566 2874 334 40 23 chr6 128693260 128694657 -20822380 + RodERV21-int LTR ERV1 3347 4767 -224 2 1566 232 212 12 24 chr6 128695023 128695105 -20821932 + CT-rich Low_complexity Low_complexity 2 82 0 2 1566 2754 64 3 0 chr6 128695669 128696013 -20821024 + IAPLTR4 LTR ERVK 1 345 0 2 1566 453 252 25 57 chr6 128696386 128696508 -20820529 - RMER15 LTR ERVL -140 435 318 2 1566 1493 186 48 30 chr6 128696546 128696883 -20820154 - ORR1D1 LTR MaLR 0 374 32 2 1566 2505 191 88 58 chr6 128696914 128697776 -20819261 + RLTR13D6 LTR ERVK 10 846 -56 2 1566 587 179 176 43 chr6 128697810 128697997 -20819040 - RMER15 LTR ERVL -290 285 74 2 1566 198 0 0 0 chr6 128698013 128698035 -20819002 + (TTAA)n Simple_repeat Simple_repeat 4 25 0 2 1566 5980 158 30 35 chr6 128698048 128698822 -20818215 - Lx4B LINE L1 -993 6065 5371 2 1566 1311 92 0 0 chr6 128698822 128699141 -20817896 + (TTTC)n Simple_repeat Simple_repeat 1 319 0 2 1566 990 75 7 7 chr6 128699141 128699276 -20817761 - B1_Mus1 SINE Alu -12 136 2 2 1566 5980 163 25 87 chr6 128699276 128699912 -20817125 - Lx4B LINE L1 -516 5370 4728 2 1566 500 45 15 0 chr6 128700310 128700377 -20816660 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 2 1566 8413 52 2 2 chr6 128700392 128701858 -20815179 - L1Md_F2 LINE L1 -1 6581 5116 2 1566 4177 113 61 3 chr6 128701919 128702560 -20814477 + RLTR33 LTR ERVK 1 678 0 2 1566 1335 53 0 0 chr6 128702728 128703088 -20813949 + (TG)n Simple_repeat Simple_repeat 1 360 0 2 1566 212 231 0 0 chr6 128704702 128704741 -20812296 + polypurine Low_complexity Low_complexity 3 41 0 2 1566 472 222 56 0 chr6 128706462 128706570 -20810467 - B1_Mur2 SINE Alu -34 115 2 2 1566 233 243 108 0 chr6 128706723 128706797 -20810240 - B3 SINE B2 0 216 135 3 1566 742 73 182 49 chr6 128706797 128706940 -20810097 + MusHAL1 LINE L1 2130 2291 -421 3 1566 3241 216 37 40 chr6 128706938 128707354 -20809683 + Lx6 LINE L1 6740 7158 -302 3 1566 2977 108 9 18 chr6 128707354 128707799 -20809238 - BGLII_B LTR ERVK 0 441 1 3 1566 3241 216 37 40 chr6 128707799 128708105 -20808932 + Lx6 LINE L1 7159 7460 0 3 1566 3274 129 35 32 chr6 128708440 128708596 -20808441 + Lx LINE L1 5347 5494 -389 3 1566 2069 37 0 12 chr6 128708596 128708844 -20808193 + L1Md_F2 LINE L1 6326 6570 -12 3 1566 6559 102 78 25 chr6 128708844 128709950 -20807087 + Lx LINE L1 5495 6651 -3 3 1566 268 206 52 42 chr6 128710098 128710117 -20806920 - B3 SINE B2 -118 98 2 3 1566 308 208 26 0 chr6 128710117 128710194 -20806843 - B4A SINE B4 -212 80 2 3 1566 681 75 0 0 chr6 128710725 128710819 -20806218 - 4.5SRNA scRNA scRNA 0 94 1 3 1566 39 60 0 0 chr6 128711724 128711791 -20805246 + AT_rich Low_complexity Low_complexity 1 67 0 3 1566 313 220 8 78 chr6 128711798 128711926 -20805111 - L1_Rod LINE L1 -4406 1441 1323 3 1566 248 324 20 0 chr6 128712356 128712458 -20804579 - L1_Rod LINE L1 -4541 1306 1203 3 1566 654 183 0 0 chr6 128712559 128712679 -20804358 - MTD LTR MaLR -124 295 176 3 1567 577 240 10 124 chr6 128712783 128712992 -20804045 + RMER30 DNA MER1_type 2 186 -16 3 1567 416 19 0 19 chr6 128713590 128713644 -20803393 + (GGA)n Simple_repeat Simple_repeat 2 54 0 3 1567 655 85 0 0 chr6 128714147 128714241 -20802796 - 4.5SRNA scRNA scRNA 0 94 1 3 1567 631 294 111 37 chr6 128714570 128715307 -20801730 - L1M2 LINE L1 -1007 5136 4332 3 1567 1430 207 104 32 chr6 128715322 128715637 -20801400 + ORR1D2 LTR MaLR 1 343 -27 3 1567 4813 58 3 0 chr6 128715637 128716222 -20800815 - LTRIS_Mus LTR ERV1 0 587 1 3 1567 1430 207 104 32 chr6 128716222 128716251 -20800786 + ORR1D2 LTR MaLR 344 370 0 3 1567 1204 225 54 151 chr6 128716274 128716829 -20800208 - RMER19C LTR ERVK -104 507 7 3 1567 509 289 110 48 chr6 128716851 128717250 -20799787 - L1M2 LINE L1 -1920 4220 3797 3 1567 377 247 41 41 chr6 128717926 128718023 -20799014 + B3A SINE B2 48 144 -54 3 1567 24 32 0 0 chr6 128718626 128718657 -20798380 + AT_rich Low_complexity Low_complexity 1 31 0 3 1567 330 216 19 19 chr6 128718778 128718882 -20798155 + L2a LINE L2 3259 3362 -64 3 1567 892 133 0 47 chr6 128719512 128719662 -20797375 + B1_Mus1 SINE Alu 5 147 -1 3 1567 227 226 38 0 chr6 128719667 128719720 -20797317 + GA-rich Low_complexity Low_complexity 3 57 0 3 1567 465 122 0 0 chr6 128719825 128719899 -20797138 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1567 605 178 23 8 chr6 128720575 128720705 -20796332 + B1_Mm SINE Alu 16 147 0 3 1567 447 19 0 0 chr6 128721484 128721536 -20795501 + (CAAAA)n Simple_repeat Simple_repeat 3 54 0 3 1567 295 301 45 19 chr6 128721683 128721839 -20795198 - L1M2 LINE L1 -513 5778 5619 3 1567 297 155 0 0 chr6 128722012 128722070 -20794967 - PB1D10 SINE Alu -12 105 48 3 1567 185 65 0 31 chr6 128722272 128722304 -20794733 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 3 1567 725 51 10 0 chr6 128722344 128722442 -20794595 + (GA)n Simple_repeat Simple_repeat 2 100 0 3 1567 1433 181 63 29 chr6 128723355 128723770 -20793267 + RLTR1 LTR ERV1 123 624 0 3 1567 2134 113 6 66 chr6 128724141 128724491 -20792546 + ORR1A4 LTR MaLR 1 329 0 3 1567 1889 223 28 2 chr6 128724622 128725018 -20792019 - MTD LTR MaLR 0 419 14 3 1567 6541 73 3 23 chr6 128725598 128726470 -20790567 - RLTR13A LTR ERVK 0 855 1 3 1567 378 312 52 35 chr6 128728316 128728545 -20788492 + MMERGLN-int LTR ERV1 583 815 -6741 3 1567 1977 333 68 36 chr6 128728678 128729995 -20787042 + MuLV-int LTR ERV1 2317 3674 -3932 3 1567 1187 277 71 84 chr6 128730550 128730769 -20786268 + Lx8 LINE L1 6835 7046 -427 3 1567 1677 31 0 0 chr6 128730769 128730961 -20786076 + B2_Mm1t SINE B2 1 192 -1 3 1567 1187 277 71 84 chr6 128730961 128731206 -20785831 + Lx8 LINE L1 7047 7293 -180 3 1567 261 83 0 0 chr6 128731264 128731300 -20785737 + (TTTTC)n Simple_repeat Simple_repeat 3 38 0 3 1567 1105 83 0 0 chr6 128731304 128731449 -20785588 - B1_Mus1 SINE Alu -2 146 2 3 1567 250 186 40 67 chr6 128731449 128731510 -20785527 + RMER15 LTR ERVL 12 69 -506 3 1567 890 155 49 0 chr6 128731510 128731652 -20785385 + B1_Mur4 SINE Alu 2 150 0 3 1567 250 186 40 67 chr6 128731652 128731665 -20785372 + RMER15 LTR ERVL 70 84 -491 3 1567 258 32 0 0 chr6 128731665 128731696 -20785341 + (TAA)n Simple_repeat Simple_repeat 2 32 0 3 1567 226 171 40 79 chr6 128731715 128731791 -20785246 + RMER15 LTR ERVL 39 111 -464 3 1567 518 0 0 16 chr6 128732769 128732832 -20784205 + (TTCTC)n Simple_repeat Simple_repeat 1 62 0 3 1567 778 239 147 16 chr6 128732836 128733157 -20783880 - Lx4B LINE L1 -23 7035 6695 3 1567 216 0 0 0 chr6 128733378 128733402 -20783635 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1567 226 338 120 42 chr6 128734510 128734677 -20782360 + MIR SINE MIR 2 181 -81 3 1567 857 257 74 58 chr6 128735304 128735734 -20781303 - RLTR28B LTR ERVL -42 439 3 3 1567 249 253 114 57 chr6 128736583 128736671 -20780366 - Tigger7 DNA MER2_type -3 2488 2396 3 1567 387 0 0 0 chr6 128736671 128736714 -20780323 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1567 453 19 0 0 chr6 128736714 128736767 -20780270 + (GA)n Simple_repeat Simple_repeat 2 55 0 3 1567 578 226 8 16 chr6 128736821 128736947 -20780090 - ID_B1 SINE B4 -8 216 92 3 1567 1369 304 12 14 chr6 128736958 128737382 -20779655 + Lx8 LINE L1 6905 7327 -146 3 1567 253 247 0 38 chr6 128737565 128737614 -20779423 + T-rich Low_complexity Low_complexity 31 77 0 3 1567 1115 92 0 0 chr6 128737614 128737755 -20779282 - B1_Mm SINE Alu -6 141 1 3 1567 253 247 0 38 chr6 128737755 128737785 -20779252 + T-rich Low_complexity Low_complexity 1 30 0 3 1567 2461 217 16 22 chr6 128738696 128739248 -20777789 - Lx6 LINE L1 -2 7458 6557 3 1567 629 241 58 0 chr6 128741289 128741426 -20775611 + B1_Mus2 SINE Alu 1 145 -2 3 1567 418 260 45 52 chr6 128741844 128741978 -20775059 + RSINE1 SINE B4 12 144 -21 3 1567 258 264 149 0 chr6 128742056 128742143 -20774894 + L1M3 LINE L1 4007 4106 -2034 3 1567 424 246 35 9 chr6 128742243 128742358 -20774679 - MLT1B LTR MaLR 0 390 273 3 1567 3209 127 23 19 chr6 128742530 128743102 -20773935 + RMER17B LTR ERVK 385 958 0 3 1567 519 188 8 64 chr6 128743721 128743846 -20773191 + B1_Mus2 SINE Alu 29 146 -1 3 1567 2187 146 44 9 chr6 128744014 128744449 -20772588 + L1_Mur3 LINE L1 3025 3474 -2406 3 1567 3218 218 36 39 chr6 128744464 128744872 -20772165 + Lx6 LINE L1 6748 7163 -297 3 1567 3007 108 9 18 chr6 128744872 128745317 -20771720 - BGLII_B LTR ERVK 0 441 1 3 1567 3218 218 36 39 chr6 128745317 128745623 -20771414 + Lx6 LINE L1 7164 7460 0 3 1567 265 211 0 22 chr6 128745932 128745966 -20771071 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1567 351 0 0 0 chr6 128745966 128746005 -20771032 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1567 265 211 0 22 chr6 128746005 128746062 -20770975 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1567 332 261 113 31 chr6 128746076 128746270 -20770767 - L1ME1 LINE L1 -33 6146 5937 3 1567 562 216 55 67 chr6 128746648 128746812 -20770225 - RSINE1 SINE B4 -1 164 3 3 1567 219 88 0 0 chr6 128747253 128747287 -20769750 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1567 826 121 113 0 chr6 128747287 128747411 -20769626 - B1_Mus1 SINE Alu -10 138 1 3 1567 794 241 191 36 chr6 128747612 128747973 -20769064 + MTD LTR MaLR 1 417 -2 3 1567 324 70 0 0 chr6 128748762 128748805 -20768232 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1567 268 206 52 42 chr6 128748882 128748901 -20768136 - B3 SINE B2 -118 98 2 3 1567 308 208 26 0 chr6 128748901 128748978 -20768059 - B4A SINE B4 -212 80 2 3 1567 668 85 0 0 chr6 128749465 128749559 -20767478 - 4.5SRNA scRNA scRNA 0 94 1 3 1567 49 52 0 0 chr6 128750436 128750513 -20766524 + AT_rich Low_complexity Low_complexity 1 77 0 3 1567 326 229 8 71 chr6 128750527 128750654 -20766383 - L1_Rod LINE L1 -4406 1441 1323 3 1567 358 237 0 0 chr6 128751155 128751252 -20765785 - L1_Rod LINE L1 -6501 1107 1011 3 1567 894 208 55 21 chr6 128751278 128751514 -20765523 - MTD LTR MaLR 0 419 176 3 1567 418 285 124 13 chr6 128751624 128751691 -20765346 + RMER30 DNA MER1_type 17 101 -101 3 1567 347 92 15 0 chr6 128751691 128751756 -20765281 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1567 418 285 124 13 chr6 128751756 128751841 -20765196 + RMER30 DNA MER1_type 102 185 -17 3 1567 510 17 0 0 chr6 128752456 128752515 -20764522 + (GGA)n Simple_repeat Simple_repeat 2 60 0 3 1567 641 96 0 0 chr6 128753032 128753126 -20763911 - 4.5SRNA scRNA scRNA 0 94 1 3 1567 616 294 107 36 chr6 128753474 128754225 -20762812 - L1M3 LINE L1 -996 5147 4332 3 1567 1395 215 132 18 chr6 128754240 128754572 -20762465 + ORR1D2 LTR MaLR 1 370 0 3 1567 1272 229 52 154 chr6 128754595 128755153 -20761884 - RMER19C LTR ERVK -104 507 7 3 1567 479 308 95 37 chr6 128755175 128755576 -20761461 - L1M3 LINE L1 -1920 4220 3797 3 1567 2455 223 57 109 chr6 128756073 128756282 -20760755 + RLTR13D3 LTR ERVK 1 212 -902 3 1567 2387 55 3 0 chr6 128756282 128756574 -20760463 - L1_Mus1 LINE L1 0 6567 6275 3 1567 2455 223 57 109 chr6 128756574 128757300 -20759737 + RLTR13D3 LTR ERVK 213 887 -227 3 1567 2582 103 72 86 chr6 128757496 128757985 -20759052 - RLTR45 LTR ERVK 0 482 1 3 1567 276 208 104 88 chr6 128758959 128759080 -20757957 + PB1D9 SINE Alu 2 149 0 3 1567 192 135 0 0 chr6 128759112 128759149 -20757888 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 3 1567 257 203 27 55 chr6 128759188 128759261 -20757776 - RMER13B LTR ERVK 0 908 838 3 1567 648 193 137 156 chr6 128759248 128759555 -20757482 - RMER13B LTR ERVK -603 305 5 3 1567 2609 138 37 61 chr6 128759696 128760153 -20756884 + RLTR41 LTR ERV1 1 446 0 3 1567 287 302 59 17 chr6 128760163 128760281 -20756756 - L1M2 LINE L1 -548 5743 5621 3 1567 281 232 95 0 chr6 128760449 128760544 -20756493 - PB1D10 SINE Alu -12 105 2 3 1567 1033 45 0 0 chr6 128760799 128760933 -20756104 - B1_Mus2 SINE Alu -2 145 12 3 1567 481 133 50 0 chr6 128761958 128762067 -20754970 + ORR1B1 LTR MaLR 1 145 -249 3 1567 551 304 26 22 chr6 128762590 128762822 -20754215 - B4 SINE B4 -59 233 1 3 1567 1485 141 6 24 chr6 128762865 128763180 -20753857 + ORR1A4 LTR MaLR 53 346 0 4 1567 1536 222 10 0 chr6 128763355 128763657 -20753380 - MTD LTR MaLR -105 314 10 4 1567 1703 288 33 20 chr6 128765442 128765932 -20751105 + Lx8 LINE L1 6835 7330 -143 4 1567 299 198 35 58 chr6 128765939 128766011 -20751026 + RMER15 LTR ERVL 1 69 -506 4 1567 897 162 49 0 chr6 128766011 128766153 -20750884 + B1_Mur4 SINE Alu 2 150 0 4 1567 299 198 35 58 chr6 128766153 128766166 -20750871 + RMER15 LTR ERVL 70 84 -491 4 1567 30 0 0 0 chr6 128766166 128766196 -20750841 + AT_rich Low_complexity Low_complexity 1 30 0 4 1567 257 155 39 78 chr6 128766203 128766280 -20750757 + RMER15 LTR ERVL 39 112 -463 4 1567 2408 104 88 57 chr6 128767740 128768147 -20748890 + RLTR9B2 LTR ERVK 1 420 0 4 1567 2028 165 37 32 chr6 128769316 128769692 -20747345 + ORR1C1 LTR MaLR 1 378 0 4 1567 328 354 130 20 chr6 128769761 128770015 -20747022 - B4A SINE B4 -10 282 1 4 1567 306 0 0 0 chr6 128771415 128771449 -20745588 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1567 616 268 383 34 chr6 128771452 128771892 -20745145 - Tigger7 DNA MER2_type -1895 596 1 4 1567 381 277 89 0 chr6 128772298 128772410 -20744627 - ID_B1 SINE B4 -21 203 82 4 1567 22 70 0 0 chr6 128772447 128772490 -20744547 + AT_rich Low_complexity Low_complexity 1 43 0 4 1567 358 342 80 5 chr6 128772864 128773064 -20743973 + MER2 DNA MER2_type 79 293 -52 4 1567 197 364 61 0 chr6 128773258 128773390 -20743647 + MIRb SINE MIR 129 268 0 4 1567 359 361 107 23 chr6 128773756 128774147 -20742890 + L2a LINE L2 3002 3425 -1 4 1567 3246 84 5 0 chr6 128774633 128775060 -20741977 - L1_Mus1 LINE L1 0 6567 6139 4 1567 25 0 0 0 chr6 128775657 128775682 -20741355 + AT_rich Low_complexity Low_complexity 1 25 0 4 1567 188 256 23 0 chr6 128777435 128777478 -20739559 - MER5A DNA MER1_type -8 181 138 4 1567 337 193 75 64 chr6 128777754 128777848 -20739189 - B3 SINE B2 -121 95 1 4 1567 207 271 29 0 chr6 128778416 128778486 -20738551 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1567 239 353 98 79 chr6 128778500 128778703 -20738334 - B4A SINE B4 -8 284 78 4 1567 1890 110 40 171 chr6 128778924 128779089 -20737948 - RLTR9F LTR ERVK -4 411 250 4 1567 315 0 0 0 chr6 128779089 128779124 -20737913 + (C)n Simple_repeat Simple_repeat 1 35 0 4 1567 1890 110 40 171 chr6 128779124 128779431 -20737606 - RLTR9F LTR ERVK -166 249 3 4 1567 1050 224 5 5 chr6 128779463 128779674 -20737363 + B3 SINE B2 1 211 -5 4 1567 264 30 0 0 chr6 128779762 128779795 -20737242 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 4 1567 350 315 60 7 chr6 128780355 128780505 -20736532 + L1MB3 LINE L1 2436 2593 -4256 4 1567 579 252 22 30 chr6 128780803 128780938 -20736099 + RSINE1 SINE B4 3 136 -29 4 1567 693 96 43 0 chr6 128781030 128781145 -20735892 - ORR1D1 LTR MaLR 0 384 265 4 1567 724 123 31 0 chr6 128781176 128781306 -20735731 - ORR1D1 LTR MaLR -239 135 2 4 1567 872 302 67 108 chr6 128781458 128781896 -20735141 + L1MB3 LINE L1 5037 5481 -1361 4 1567 245 274 0 0 chr6 128781896 128781947 -20735090 + ID SINE ID 1 51 -173 4 1567 872 302 67 108 chr6 128781947 128782066 -20734971 + L1MB3 LINE L1 5482 5603 -1239 4 1567 697 242 25 69 chr6 128782066 128782270 -20734767 - B3A SINE B2 -2 196 2 4 1567 872 302 67 108 chr6 128782270 128782512 -20734525 + L1MB3 LINE L1 5604 5852 -990 4 1567 413 332 71 37 chr6 128783172 128783494 -20733543 + L1MCa LINE L1 247 579 -5929 4 1567 331 301 16 108 chr6 128783780 128783966 -20733071 + L1MB3 LINE L1 6126 6294 -579 4 1567 664 289 64 41 chr6 128784013 128784327 -20732710 + MLT1A1 LTR MaLR 30 350 -58 4 1567 805 276 64 13 chr6 128784353 128784710 -20732327 + L1MB3 LINE L1 6377 6749 -124 4 1567 224 303 0 38 chr6 128784713 128784792 -20732245 + ID4 SINE ID 7 82 -1 4 1567 259 290 0 131 chr6 128784730 128784837 -20732200 + ID_B1 SINE B4 23 115 -109 4 1567 465 19 0 0 chr6 128784972 128785026 -20732011 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1567 1202 92 52 31 chr6 128785042 128785233 -20731804 + B2_Mm2 SINE B2 1 195 0 4 1567 349 194 142 43 chr6 128785282 128785444 -20731593 + RMER10B LTR ERVL 71 248 -150 4 1567 352 267 72 58 chr6 128785935 128786074 -20730963 + B1F SINE Alu 2 142 -7 4 1567 311 179 18 0 chr6 128787255 128787311 -20729726 + PB1D9 SINE Alu 20 76 -44 4 1567 887 296 31 73 chr6 128787638 128788037 -20729000 + MTE2b LTR MaLR 35 406 -13 4 1567 663 85 0 0 chr6 128788468 128788562 -20728475 + 4.5SRNA scRNA scRNA 1 94 0 4 1567 308 208 26 0 chr6 128789066 128789143 -20727894 + B4A SINE B4 2 80 -212 4 1567 268 206 52 42 chr6 128789143 128789162 -20727875 + B3 SINE B2 2 98 -118 4 1567 405 58 0 0 chr6 128789977 128790029 -20727008 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1567 307 241 13 0 chr6 128790031 128790110 -20726927 - RMER30 DNA MER1_type -121 81 2 4 1567 953 148 0 26 chr6 128790517 128790670 -20726367 + B1_Mur4 SINE Alu 2 150 0 4 1567 1201 61 0 0 chr6 128790722 128790870 -20726167 - B1_Mus1 SINE Alu 0 148 1 4 1567 624 105 44 0 chr6 128791469 128791583 -20725454 + (GGGAGA)n Simple_repeat Simple_repeat 3 121 0 4 1567 638 96 0 0 chr6 128793304 128793398 -20723639 + 4.5SRNA scRNA scRNA 1 94 0 4 1567 206 121 30 0 chr6 128794528 128794561 -20722476 + CT-rich Low_complexity Low_complexity 3 36 0 4 1567 1165 260 30 52 chr6 128794597 128795023 -20722014 - MTD LTR MaLR 0 419 3 4 1567 615 256 23 78 chr6 128795025 128795197 -20721840 - MTD-int LTR MaLR 0 1258 1088 4 1567 216 0 0 0 chr6 128795197 128795221 -20721816 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4 1567 615 256 23 78 chr6 128795221 128795306 -20721731 - MTD-int LTR MaLR -171 1087 1015 4 1567 1623 21 21 0 chr6 128795972 128796160 -20720877 - B2_Mm1a SINE B2 0 193 2 4 1567 246 156 0 0 chr6 128796672 128796717 -20720320 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1567 2908 222 87 55 chr6 128796830 128797678 -20719359 - RMER1C Other Other -3 1339 49 4 1567 290 257 0 0 chr6 128797704 128797778 -20719259 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1567 303 121 0 0 chr6 128797778 128797836 -20719201 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1567 345 303 52 7 chr6 128798065 128798218 -20718819 - MLT1F2 LTR MaLR -24 536 377 4 1567 198 0 0 0 chr6 128798332 128798354 -20718683 + (CAGA)n Simple_repeat Simple_repeat 4 25 0 4 1567 1340 241 47 52 chr6 128799234 128799615 -20717422 + MTE2a LTR MaLR 1 379 0 4 1567 509 133 33 0 chr6 128800276 128800366 -20716671 + 4.5SRNA scRNA scRNA 2 94 0 4 1567 1691 161 78 12 chr6 128801143 128801489 -20715548 + RMER12B LTR ERVK 828 1196 -208 4 1567 966 122 0 0 chr6 128801491 128801671 -20715366 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1567 444 187 6 168 chr6 128801692 128801853 -20715184 + RLTR21 LTR ERVK 1438 1572 0 4 1567 999 125 0 0 chr6 128802402 128802706 -20714331 + (CA)n Simple_repeat Simple_repeat 1 304 0 4 1567 669 282 194 24 chr6 128802901 128803242 -20713795 - RMER5 LTR ERV1 -10 524 126 4 1567 475 260 1 12 chr6 128803259 128803370 -20713667 + B3 SINE B2 102 210 -6 4 1567 522 0 0 0 chr6 128803389 128803447 -20713590 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1567 2278 142 48 9 chr6 128804561 128804981 -20712056 + Lx LINE L1 6219 6654 0 4 1567 253 262 95 0 chr6 128805008 128805092 -20711945 + RLTR42-int LTR ERVK 1690 1781 -3741 4 1567 285 157 198 35 chr6 128805107 128805193 -20711844 + RLTR19-int LTR ERVK 1015 1114 -5023 4 1567 2775 202 41 47 chr6 128805198 128805880 -20711157 + RLTR19-int LTR ERVK 2330 3007 -3130 4 1567 290 204 98 125 chr6 128805890 128806002 -20711035 + RLTR19-int LTR ERVK 3199 3307 -2830 4 1567 325 167 0 0 chr6 128805981 128806041 -20710996 + MYSERV6-int LTR ERVK 8719 8778 -181 4 1567 544 282 70 31 chr6 128806272 128806499 -20710538 + RMER17C-int LTR ERVK 2917 3152 -86 4 1567 305 150 16 16 chr6 128806556 128806617 -20710420 + RMER10B LTR ERVL 1 61 -337 4 1567 428 173 0 0 chr6 128806607 128806682 -20710355 + RMER10B LTR ERVL 324 398 0 4 1567 192 77 0 0 chr6 128806737 128806763 -20710274 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1567 1200 47 0 20 chr6 128806763 128806914 -20710123 - B1_Mus1 SINE Alu 0 148 1 4 1567 1188 109 40 0 chr6 128806916 128807090 -20709947 - B2_Mm2 SINE B2 -14 181 1 4 1567 1285 224 82 60 chr6 128807870 128808508 -20708529 + L1VL4 LINE L1 87 795 -5540 4 1567 351 232 0 0 chr6 128808847 128808916 -20708121 - RNERVK23-int LTR ERVK -2795 5422 5354 4 1567 3668 64 28 2 chr6 128810105 128810575 -20706462 + RLTR45 LTR ERVK 1 482 0 4 1567 3690 75 66 14 chr6 128810575 128811207 -20705830 + RLTR45-int LTR ERVK 1 692 -6552 4 1567 1157 51 0 0 chr6 128811505 128811643 -20705394 + RLTR45-int LTR ERVK 681 818 -6426 4 1567 274 207 54 54 chr6 128812042 128812134 -20704903 + MMTV-int LTR ERVK 2413 2504 -4749 4 1567 11967 41 13 11 chr6 128812442 128814266 -20702771 + RLTR45-int LTR ERVK 1322 3212 -4032 4 1567 4047 83 30 33 chr6 128814236 128814845 -20702192 + RLTR45-int LTR ERVK 3380 3986 -3258 4 1567 18319 43 6 6 chr6 128814838 128817011 -20700026 + RLTR45-int LTR ERVK 5065 7236 -8 4 1567 410 69 0 0 chr6 128817011 128817069 -20699968 - RLTR45 LTR ERVK -424 58 1 4 1567 649 240 25 0 chr6 128817505 128817626 -20699411 - ETnERV2-int LTR ERVK -213 7193 7070 4 1567 1283 162 25 8 chr6 128819228 128819471 -20697566 - RLTR22_Mur LTR ERVK -11 1837 1591 4 1567 5710 82 3 13 chr6 128819660 128820522 -20696515 - RLTR22_Mus LTR ERVK -954 854 1 4 1567 9719 143 16 20 chr6 128820522 128822272 -20694765 + MusHAL1 LINE L1 684 2426 -286 4 1567 419 238 0 0 chr6 128822277 128822382 -20694655 + L1M4 LINE L1 3655 3759 -2387 4 1567 2225 124 106 5 chr6 128822382 128822779 -20694258 + BGLII_B LTR ERVK 5 441 0 4 1567 302 250 32 20 chr6 128822874 128823001 -20694036 - RLTR13D3 LTR ERVK -42 1072 983 4 1567 240 111 0 0 chr6 128823257 128823293 -20693744 - B2_Mm2 SINE B2 -158 37 2 4 1567 1278 120 0 30 chr6 128823386 128823584 -20693453 - B2_Mm2 SINE B2 -3 192 1 4 1567 23 33 0 0 chr6 128823684 128823714 -20693323 + AT_rich Low_complexity Low_complexity 1 30 0 4 1567 233 265 12 0 chr6 128824015 128824098 -20692939 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 1567 10034 178 74 88 chr6 128824620 128827687 -20689350 + MMETn-int LTR ERVK 117 3141 -1703 4 1567 6759 146 18 47 chr6 128827656 128828765 -20688272 + ETnERV2-int LTR ERVK 6127 7203 -203 4 1567 339 229 334 5 chr6 128828767 128828962 -20688075 + RLTR13B1 LTR ERVK 155 415 -487 4 1567 702 211 42 6 chr6 128828962 128829129 -20687908 + MMETn-int LTR ERVK 4672 4844 0 4 1567 1083 181 37 117 chr6 128829129 128829479 -20687558 + RLTRETN_Mm LTR ERVK 1 322 0 4 1567 8571 213 83 44 chr6 128829479 128832257 -20684780 + MMETn-int LTR ERVK 30 2325 -1 4 1567 2183 157 97 0 chr6 128832257 128832659 -20684378 + BGLII_B LTR ERVK 1 441 0 4 1567 5882 163 15 8 chr6 128832659 128833654 -20683383 + Lx2B LINE L1 3728 4725 -1152 4 1567 351 0 0 0 chr6 128833654 128833693 -20683344 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 4 1567 5882 163 15 8 chr6 128833693 128833752 -20683285 + Lx2B LINE L1 4726 4789 -1088 4 1567 261 57 0 0 chr6 128834583 128834618 -20682419 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 5 1567 294 286 106 45 chr6 128835117 128835296 -20681741 + L1M4b LINE L1 10 199 -7135 5 1567 6427 144 21 7 chr6 128835301 128836669 -20680368 + Lx2B LINE L1 4747 6128 -872 4 1567 1563 183 56 37 chr6 128836671 128836994 -20680043 + Lx2B LINE L1 6671 6999 -1 4 1567 459 0 0 0 chr6 128837203 128837254 -20679783 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1567 1117 78 0 0 chr6 128837256 128837397 -20679640 + B1_Mus1 SINE Alu 2 142 -6 5 1567 277 213 25 51 chr6 128838242 128838321 -20678716 - B3A SINE B2 -121 77 1 5 1567 372 252 37 0 chr6 128839264 128839371 -20677666 - L1MA6 LINE L1 -130 6170 6060 5 1567 252 324 62 44 chr6 128839486 128839599 -20677438 - RMER10B LTR ERVL -13 385 271 5 1567 452 240 88 48 chr6 128839819 128840011 -20677026 + L1MA7 LINE L1 5744 5939 -364 5 1567 587 291 54 20 chr6 128840541 128840709 -20676328 + B3 SINE B2 1 169 -47 5 1567 209 98 0 24 chr6 128840709 128840751 -20676286 + (CATA)n Simple_repeat Simple_repeat 3 43 0 5 1567 587 291 54 20 chr6 128840751 128840785 -20676252 + B3 SINE B2 170 210 -6 5 1567 201 39 0 0 chr6 128841797 128841823 -20675214 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5 1567 718 295 16 0 chr6 128842303 128842493 -20674544 - B3 SINE B2 -17 199 7 5 1567 316 330 25 120 chr6 128842620 128842814 -20674223 - L1M4 LINE L1 -1815 4331 4156 5 1567 615 262 120 0 chr6 128842814 128842997 -20674040 - B3 SINE B2 -7 209 5 5 1567 316 330 25 120 chr6 128842997 128843202 -20673835 - L1M4 LINE L1 -1991 4155 3970 5 1568 525 332 63 36 chr6 128844146 128844449 -20672588 + Tigger7 DNA MER2_type 40 350 -2141 5 1568 1000 198 16 0 chr6 128846687 128846879 -20670158 + B2_Mm2 SINE B2 1 195 0 5 1568 1818 87 11 0 chr6 128847532 128847796 -20669241 - RLTR22_Mus LTR ERVK -1541 267 1 5 1568 263 276 30 68 chr6 128848021 128848153 -20668884 + Lx5 LINE L1 6891 7017 -33 5 1568 218 189 265 31 chr6 128848284 128848382 -20668655 - B2_Mm2 SINE B2 -61 134 14 5 1568 230 321 96 30 chr6 128848393 128848528 -20668509 - RMER10A LTR ERVL -288 154 11 5 1568 315 0 0 0 chr6 128848612 128848647 -20668390 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1568 2508 97 135 5 chr6 128848849 128849233 -20667804 + RLTR9B LTR ERVK 1 434 -3 5 1568 244 83 0 0 chr6 128849281 128849317 -20667720 + U2 snRNA snRNA 1 36 -152 5 1568 1826 166 14 49 chr6 128849716 128850141 -20666896 + RMER17C LTR ERVK 1 410 0 5 1568 3016 181 80 41 chr6 128850142 128850804 -20666233 + RMER17C-int LTR ERVK 1 688 -2550 5 1568 3154 130 345 22 chr6 128851790 128852179 -20664858 + RMER17C-int LTR ERVK 1268 1806 -1432 5 1568 189 0 0 0 chr6 128852179 128852200 -20664837 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1568 3154 132 128 50 chr6 128852200 128852274 -20664763 + RMER17C-int LTR ERVK 1807 1866 -1372 5 1568 2439 85 25 149 chr6 128852274 128852756 -20664281 + BGLII_Mus LTR ERVK 1 422 0 5 1568 3154 132 128 50 chr6 128852756 128853148 -20663889 + RMER17C-int LTR ERVK 1867 2287 -951 5 1568 1034 82 0 33 chr6 128853160 128853260 -20663777 - B1_Mus2 SINE Alu 0 147 52 5 1568 3214 71 43 134 chr6 128853260 128853813 -20663224 - RLTR1C LTR ERV1 0 503 1 5 1568 1034 82 0 33 chr6 128853813 128853864 -20663173 - B1_Mus2 SINE Alu -96 51 1 5 1568 1870 128 159 38 chr6 128853865 128854262 -20662775 + RMER17C-int LTR ERVK 2273 2717 -521 5 1568 672 24 0 0 chr6 128854263 128854345 -20662692 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1568 1452 126 50 0 chr6 128854345 128854567 -20662470 + RMER17C-int LTR ERVK 2900 3132 -106 5 1568 3227 25 0 0 chr6 128854568 128854935 -20662102 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1568 55958 24 15 4 chr6 128854935 128861334 -20655703 - IAPEz-int LTR ERVK 0 6481 67 5 1568 1041 86 159 0 chr6 128861305 128861468 -20655569 - IAPEz-int LTR ERVK -6285 196 8 5 1568 3227 25 0 0 chr6 128861468 128861835 -20655202 - IAPLTR1_Mm LTR ERVK 0 367 1 5 1568 367 154 15 15 chr6 128861835 128861901 -20655136 + RMER17C-int LTR ERVK 3128 3193 -45 5 1568 1839 159 15 120 chr6 128861916 128862374 -20654663 + RMER17C LTR ERVK 1 410 0 5 1568 225 0 0 0 chr6 128862432 128862457 -20654580 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 5 1568 1343 288 50 26 chr6 128862857 128863359 -20653678 + RMER20A LTR ERVK 3 516 0 5 1568 584 287 123 21 chr6 128863525 128863810 -20653227 + MERVK26-int LTR ERVK 153 466 -6453 5 1568 3840 63 4 8 chr6 128864479 128864971 -20652066 + L1Md_F2 LINE L1 6093 6582 0 5 1568 29 28 0 0 chr6 128864971 128865007 -20652030 + AT_rich Low_complexity Low_complexity 1 36 0 5 1568 426 254 363 12 chr6 128865086 128865428 -20651609 + RMER12 LTR ERVK 776 1237 -85 5 1568 38 0 0 0 chr6 128865640 128865678 -20651359 + AT_rich Low_complexity Low_complexity 1 38 0 5 1568 32 0 0 0 chr6 128865789 128865821 -20651216 + AT_rich Low_complexity Low_complexity 1 32 0 5 1568 1385 170 12 216 chr6 128865906 128866415 -20650622 - RMER17C LTR ERVK -2 408 4 5 1568 7393 134 125 90 chr6 128866423 128866748 -20650289 - RMER17C-int LTR ERVK -8 3230 2900 5 1568 369 43 0 0 chr6 128866748 128866795 -20650242 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1568 7393 134 125 90 chr6 128866795 128867048 -20649989 - RMER17C-int LTR ERVK -339 2899 2628 5 1568 259 196 0 19 chr6 128867048 128867100 -20649937 + LSU-rRNA_Hsa rRNA rRNA 4202 4252 -783 5 1568 7393 134 125 90 chr6 128867100 128868175 -20648862 - RMER17C-int LTR ERVK -339 2627 1467 5 1568 834 76 0 0 chr6 128868206 128868311 -20648726 - L1Md_F3 LINE L1 -433 6151 6047 5 1568 786 131 7 14 chr6 128868313 128868453 -20648584 + L1Md_F2 LINE L1 6444 6582 0 5 1568 26 30 0 0 chr6 128868973 128869006 -20648031 + AT_rich Low_complexity Low_complexity 1 33 0 5 1568 228 67 0 0 chr6 128869211 128869241 -20647796 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1568 534 278 14 0 chr6 128870571 128870715 -20646322 - B1_Mur3 SINE Alu 0 149 4 5 1568 2805 19 28 0 chr6 128871129 128871447 -20645590 + IAPLTR2b LTR ERVK 1 327 0 5 1568 1022 123 94 0 chr6 128871448 128871619 -20645418 + IAPEz-int LTR ERVK 9 195 -6286 5 1568 236 244 0 0 chr6 128871627 128871672 -20645365 + RLTR27 LTR ERVK 231 275 -34 5 1568 4903 100 73 65 chr6 128871672 128872637 -20644400 + IAPEz-int LTR ERVK 168 994 -5487 5 1568 372 88 0 0 chr6 128872638 128872695 -20644342 + B1_Mus1 SINE Alu 1 57 -91 5 1568 1934 67 4 0 chr6 128872700 128872939 -20644098 + IAPEY3-int LTR ERVK 2258 2497 -5183 5 1568 13954 81 9 8 chr6 128872938 128874760 -20642277 + IAPEz-int LTR ERVK 4656 6479 -2 5 1568 2639 26 178 0 chr6 128874762 128875110 -20641927 + IAPLTR2b LTR ERVK 1 410 -1 5 1568 32 26 0 0 chr6 128875312 128875351 -20641686 + AT_rich Low_complexity Low_complexity 1 39 0 5 1568 585 179 0 75 chr6 128875353 128875486 -20641551 - B1_Mur2 SINE Alu -3 146 24 5 1568 1482 249 31 14 chr6 128875534 128875958 -20641079 + RLTR16 LTR ERVK 3 433 -72 5 1568 1088 295 17 14 chr6 128876154 128876585 -20640452 + Lx9 LINE L1 5501 5969 -1675 5 1568 1062 185 39 75 chr6 128876607 128876887 -20640150 + L1_Mur2 LINE L1 3391 3660 -2217 5 1568 952 110 0 0 chr6 128876887 128877023 -20640014 - B2_Mm1t SINE B2 -56 137 2 5 1568 447 103 0 0 chr6 128877024 128877092 -20639945 + L1_Mur2 LINE L1 3662 3729 -2157 5 1568 8709 90 7 16 chr6 128877091 128879077 -20637960 + L1_Mus2 LINE L1 4606 6564 -2 5 1568 2081 135 84 63 chr6 128879110 128879538 -20637499 + BGLII_B LTR ERVK 5 441 0 5 1568 436 126 11 11 chr6 128880071 128880159 -20636878 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 1568 377 133 0 0 chr6 128880676 128880736 -20636301 - RLTR45-int LTR ERVK -7184 60 1 5 1568 2290 130 21 185 chr6 128880736 128881313 -20635724 - RLTR45 LTR ERVK 0 482 1 5 1568 540 322 11 11 chr6 128881315 128881450 -20635587 + B3 SINE B2 32 165 -51 5 1568 231 88 0 0 chr6 128881450 128881484 -20635553 + (CATA)n Simple_repeat Simple_repeat 2 35 0 5 1568 540 322 11 11 chr6 128881484 128881527 -20635510 + B3 SINE B2 166 209 -7 5 1568 245 29 29 0 chr6 128881562 128881596 -20635441 + U2 snRNA snRNA 1 35 -153 5 1568 231 36 0 0 chr6 128882605 128882633 -20634404 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 5 1568 1045 179 5 0 chr6 128882973 128883163 -20633874 + URR1A DNA MER1_type 36 226 0 5 1568 334 302 69 0 chr6 128883232 128883348 -20633689 + RMER5 LTR ERV1 399 522 -12 5 1568 220 183 41 27 chr6 128883562 128883635 -20633402 + T-rich Low_complexity Low_complexity 4 77 0 5 1568 4195 33 4 4 chr6 128883759 128884250 -20632787 - L1Md_T LINE L1 0 6582 6092 5 1568 201 39 0 0 chr6 128885007 128885033 -20632004 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 5 1568 745 146 54 0 chr6 128885374 128885504 -20631533 - RMER17C-int LTR ERVK -966 2272 2136 5 1568 981 111 0 0 chr6 128885527 128885671 -20631366 + B1_Mus1 SINE Alu 5 148 0 5 1568 2894 156 124 20 chr6 128885688 128886284 -20630753 - RMER17C-int LTR ERVK -1135 2103 1446 5 1568 2911 9 0 0 chr6 128886284 128886606 -20630431 - RLTRETN_Mm LTR ERVK 0 322 1 5 1568 6041 19 4 1 chr6 128886606 128887282 -20629755 - MMETn-int LTR ERVK 0 4844 4167 5 1568 35160 23 1 5 chr6 128887280 128891329 -20625708 - MMETn-int LTR ERVK -813 4031 1 5 1568 3018 19 0 0 chr6 128891329 128891651 -20625386 - RLTRETN_Mm LTR ERVK 0 322 1 5 1568 541 38 25 0 chr6 128892128 128892208 -20624829 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 1568 204 40 0 0 chr6 128892405 128892430 -20624607 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 5 1568 1659 191 225 45 chr6 128892430 128892961 -20624076 - RMER17C-int LTR ERVK -2611 627 1 5 1568 1570 137 138 53 chr6 128892962 128893133 -20623904 - RMER17C LTR ERVK 0 410 212 5 1568 708 88 0 0 chr6 128893133 128893247 -20623790 + (GA)n Simple_repeat Simple_repeat 1 114 0 5 1568 1570 137 138 53 chr6 128893247 128893453 -20623584 - RMER17C LTR ERVK -199 211 1 5 1568 26 0 0 0 chr6 128893874 128893900 -20623137 + AT_rich Low_complexity Low_complexity 1 26 0 5 1568 6842 118 48 19 chr6 128893908 128894974 -20622063 - Lx3B LINE L1 -3 6970 5874 5 1568 201 121 0 0 chr6 128895645 128895678 -20621359 + (TTA)n Simple_repeat Simple_repeat 1 33 0 5 1568 924 254 29 19 chr6 128895839 128896048 -20620989 + B3 SINE B2 4 214 -2 5 1568 447 345 22 0 chr6 128896282 128896421 -20620616 - ID_B1 SINE B4 -5 219 78 5 1568 414 210 0 83 chr6 128896424 128896533 -20620504 - B3 SINE B2 -102 114 15 5 1568 605 329 71 0 chr6 128897329 128897554 -20619483 + Tigger7 DNA MER2_type 32 272 -2219 5 1568 1168 86 0 0 chr6 128899033 128899173 -20617864 - B1_Mm SINE Alu -6 141 2 5 1568 4041 137 15 98 chr6 128900311 128901130 -20615907 + RMER17A LTR ERVK 1 751 0 5 1568 1965 233 41 19 chr6 128901192 128901660 -20615377 - Lx2B LINE L1 0 7000 6523 5 1568 1400 150 319 80 chr6 128902410 128902837 -20614200 - RLTR24 LTR ERV1 0 529 1 5 1568 429 319 72 75 chr6 128903407 128903821 -20613216 - RMER10A LTR ERVL -19 423 11 5 1568 298 215 0 0 chr6 128903857 128903922 -20613115 + T-rich Low_complexity Low_complexity 1 65 0 5 1568 486 0 0 0 chr6 128903923 128903977 -20613060 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1568 2000 89 130 3 chr6 128904174 128904490 -20612547 + RLTR9B LTR ERVK 1 356 -81 5 1568 3545 57 0 0 chr6 128904491 128904912 -20612125 - L1Md_F2 LINE L1 -4 6578 6158 5 1568 34805 75 1 15 chr6 128904912 128910190 -20606847 - L1Md_F LINE L1 -170 5713 512 5 1568 384 162 138 0 chr6 128910190 128910270 -20606767 + RLTR9B LTR ERVK 347 437 0 5 1568 235 154 0 0 chr6 128910327 128910366 -20606671 + U2 snRNA snRNA 1 39 -149 5 1568 1111 208 20 62 chr6 128910787 128911223 -20605814 + RMER17C LTR ERVK 20 410 0 5 1568 2862 173 86 34 chr6 128911224 128911816 -20605221 + RMER17C-int LTR ERVK 1 623 -2615 5 1568 3708 139 268 52 chr6 128912834 128913314 -20603723 + RMER17C-int LTR ERVK 1277 1870 -1368 5 1568 2669 85 25 146 chr6 128913314 128913794 -20603243 + BGLII_Mus LTR ERVK 1 422 0 5 1568 3708 145 152 60 chr6 128913794 128914184 -20602853 + RMER17C-int LTR ERVK 1871 2287 -951 5 1568 5969 227 95 56 chr6 128914193 128916933 -20600104 + MYSERV16_I-int LTR ERVK 999 6422 -128 5 1568 2438 155 86 0 chr6 128916933 128917339 -20599698 + BGLII_B LTR ERVK 1 441 0 5 1568 5958 182 336 2 chr6 128917339 128917947 -20599090 + Lx2B LINE L1 3737 4834 -1052 5 1568 995 130 7 0 chr6 128917947 128918093 -20598944 - B1_Mm SINE Alu 0 147 1 5 1568 8685 158 117 15 chr6 128918093 128920237 -20596800 + Lx2B LINE L1 4835 7000 0 5 1568 3047 38 114 0 chr6 128920953 128921322 -20595715 + IAPLTR2a LTR ERVK 1 411 0 5 1568 276 227 25 74 chr6 128922090 128922171 -20594866 - B3A SINE B2 -121 77 1 5 1568 311 267 40 0 chr6 128923060 128923161 -20593876 - L1MA6 LINE L1 -130 6170 6066 6 1568 337 333 67 17 chr6 128923284 128923403 -20593634 - RMER10B LTR ERVL -11 387 263 6 1568 460 215 95 53 chr6 128923613 128923803 -20593234 + L1MA7 LINE L1 5744 5938 -218 6 1568 763 298 9 9 chr6 128924338 128924504 -20592533 + B3 SINE B2 1 165 -51 6 1568 270 0 0 0 chr6 128924504 128924534 -20592503 + (CATA)n Simple_repeat Simple_repeat 2 31 0 6 1568 763 298 9 9 chr6 128924534 128924577 -20592460 + B3 SINE B2 166 209 -7 6 1568 259 29 29 0 chr6 128924612 128924646 -20592391 + U2 snRNA snRNA 1 35 -153 6 1568 276 30 0 0 chr6 128925651 128925684 -20591353 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 6 1568 207 0 0 0 chr6 128925710 128925733 -20591304 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1568 375 292 10 10 chr6 128925964 128926061 -20590976 - PB1D10 SINE Alu 0 117 21 6 1568 456 227 20 40 chr6 128926168 128926269 -20590768 + PB1 SINE Alu 1 99 -28 6 1568 227 329 14 0 chr6 128926491 128926561 -20590476 - ID4 SINE ID -11 72 2 6 1568 437 231 176 32 chr6 128926563 128926688 -20590349 - B1F SINE Alu -5 144 2 6 1568 896 264 9 42 chr6 128928839 128929056 -20587981 - B3 SINE B2 0 216 7 6 1568 468 299 139 100 chr6 128929082 128929386 -20587651 - L1M4 LINE L1 -1681 4465 4154 6 1568 700 246 123 0 chr6 128929386 128929565 -20587472 - B3 SINE B2 -11 205 5 6 1568 468 299 139 100 chr6 128929565 128929870 -20587167 - L1M4 LINE L1 -1974 4172 3832 6 1568 730 323 58 35 chr6 128930675 128930986 -20586051 + Tigger7 DNA MER2_type 33 350 -2141 6 1568 1072 180 21 0 chr6 128933226 128933415 -20583622 + B2_Mm2 SINE B2 3 195 0 6 1568 1892 98 0 4 chr6 128934076 128934343 -20582694 - RLTR22_Mus LTR ERVK -1541 267 2 6 1568 348 266 23 31 chr6 128934572 128934700 -20582337 + Lx5 LINE L1 6891 7017 -33 6 1568 369 160 239 28 chr6 128934824 128934933 -20582104 - B2_Mm2 SINE B2 -61 134 3 6 1568 394 224 111 10 chr6 128935138 128935237 -20581800 - B3 SINE B2 -57 159 51 6 1568 7157 111 33 0 chr6 128935594 128936687 -20580350 - MusHAL1 LINE L1 -627 2085 957 6 1568 755 239 65 11 chr6 128936888 128937074 -20579963 - B3 SINE B2 -18 198 3 6 1568 9244 94 18 0 chr6 128937310 128939301 -20577736 - L1_Mus1 LINE L1 0 6567 4542 6 1568 4126 150 18 41 chr6 128939299 128940630 -20576407 - L1_Mus1 LINE L1 -4077 1806 504 6 1568 759 184 13 44 chr6 128940914 128941073 -20575964 - ORR1D1 LTR MaLR -210 164 11 6 1568 243 176 65 21 chr6 128941586 128941679 -20575358 + (TTATA)n Simple_repeat Simple_repeat 4 100 0 6 1568 489 276 0 8 chr6 128941685 128941802 -20575235 - B1_Mur1 SINE Alu -28 121 6 6 1568 1248 169 4 44 chr6 128942086 128942315 -20574722 + URR1A DNA MER1_type 7 226 0 6 1568 357 271 83 0 chr6 128942381 128942477 -20574560 + RMER5 LTR ERV1 399 502 -32 6 1568 208 185 45 15 chr6 128942709 128942775 -20574262 + T-rich Low_complexity Low_complexity 4 71 0 6 1568 3586 168 132 23 chr6 128944012 128944090 -20572947 - RMER17C-int LTR ERVK -966 2272 2201 6 1568 5055 141 60 17 chr6 128944090 128944261 -20572776 - RLTR13D6 LTR ERVK 0 902 733 6 1568 306 0 0 0 chr6 128944261 128944295 -20572742 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1568 5055 141 60 17 chr6 128944295 128944988 -20572049 - RLTR13D6 LTR ERVK -170 732 2 6 1568 3586 168 132 23 chr6 128944988 128945689 -20571348 - RMER17C-int LTR ERVK -1038 2200 1408 6 1568 480 230 246 43 chr6 128946458 128946735 -20570302 - RMER17C-int LTR ERVK -2476 762 430 6 1568 1968 112 18 57 chr6 128946742 128947075 -20569962 - RLTRETN_Mm LTR ERVK -2 320 1 6 1568 6906 184 30 32 chr6 128947075 128948466 -20568571 - MMETn-int LTR ERVK 0 4844 3457 6 1568 1064 122 15 72 chr6 128948530 128948725 -20568312 - RMER17C-int LTR ERVK -3054 184 1 6 1568 1551 165 69 59 chr6 128948726 128949132 -20567905 - RMER17C LTR ERVK 0 410 1 6 1568 22 35 0 0 chr6 128949549 128949578 -20567459 + AT_rich Low_complexity Low_complexity 1 29 0 6 1568 6759 129 40 31 chr6 128949586 128950673 -20566364 - Lx3B LINE L1 -3 6970 5875 6 1568 255 276 102 8 chr6 128950716 128950844 -20566193 - L1M5 LINE L1 -507 5672 5533 6 1568 21 0 0 0 chr6 128950908 128950929 -20566108 + AT_rich Low_complexity Low_complexity 1 21 0 6 1568 205 83 83 0 chr6 128951028 128951064 -20565973 + T-rich Low_complexity Low_complexity 2 40 0 6 1568 203 219 55 0 chr6 128951332 128951405 -20565632 + T-rich Low_complexity Low_complexity 6 82 0 6 1568 351 260 13 40 chr6 128951546 128951622 -20565415 + B3 SINE B2 4 77 -139 6 1568 4845 116 4 58 chr6 128953649 128953908 -20563129 + Lx2 LINE L1 6106 6344 -653 6 1568 1223 58 0 0 chr6 128953908 128954047 -20562990 - B1_Mm SINE Alu -8 139 1 6 1568 4845 116 4 58 chr6 128954047 128954592 -20562445 + Lx2 LINE L1 6345 6866 -131 6 1568 192 77 0 0 chr6 128954592 128954618 -20562419 + (TGGG)n Simple_repeat Simple_repeat 4 29 0 6 1568 2475 84 36 22 chr6 128955689 128956052 -20560985 + RLTR9A LTR ERVK 1 368 0 6 1568 2936 132 95 34 chr6 128956180 128956725 -20560312 + RLTR1D LTR ERV1 1 589 -16 6 1568 186 43 0 0 chr6 128957253 128957276 -20559761 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1568 479 276 2 3 chr6 128957276 128957406 -20559631 - B1_Mus1 SINE Alu -9 140 12 6 1568 22 35 0 0 chr6 128958029 128958058 -20558979 + AT_rich Low_complexity Low_complexity 1 29 0 6 1568 673 213 0 42 chr6 128958067 128958215 -20558822 - B1_Mur2 SINE Alu -2 147 9 6 1568 2877 73 17 2 chr6 128958267 128958676 -20558361 - BGLII LTR ERVK -6 415 1 6 1568 1030 297 82 16 chr6 128958678 128959129 -20557908 + RLTR16 LTR ERVK 13 493 -12 6 1568 2354 83 38 3 chr6 128959303 128959643 -20557394 - RLTR13D6 LTR ERVK 0 902 551 6 1568 699 144 120 8 chr6 128959624 128959757 -20557280 + RLTR13D6 LTR ERVK 755 902 0 6 1568 991 292 10 3 chr6 128959779 128960071 -20556966 + Lx9 LINE L1 5543 5836 -11 6 1568 2774 37 0 45 chr6 128960071 128960408 -20556629 - RLTRETN_Mm LTR ERVK 0 322 1 6 1568 746 330 42 39 chr6 128960408 128960508 -20556529 + Lx9 LINE L1 5867 5969 -1675 6 1568 1683 179 51 23 chr6 128960625 128961019 -20556018 - RMER17C LTR ERVK 0 410 6 6 1568 2500 118 150 15 chr6 128961019 128961638 -20555399 - RMER17C-int LTR ERVK -4 3234 2532 6 1568 2390 125 97 7 chr6 128961626 128962038 -20554999 - RMER17C-int LTR ERVK -879 2359 1911 6 1568 2759 114 21 37 chr6 128962038 128962521 -20554516 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1568 1341 177 182 60 chr6 128962521 128962906 -20554131 - RMER17C-int LTR ERVK -1322 1916 1485 6 1568 358 125 0 51 chr6 128963243 128963302 -20553735 - RMER17C-int LTR ERVK -3094 144 89 6 1568 298 279 50 101 chr6 128963303 128963482 -20553555 + RMER10A LTR ERVL 255 424 -18 6 1568 1139 153 5 0 chr6 128963537 128963727 -20553310 + RLTR12A LTR ERVK 1 191 -377 6 1568 217 245 0 19 chr6 128963772 128963826 -20553211 + PB1D9 SINE Alu 65 117 -3 6 1568 449 233 47 55 chr6 128964731 128964858 -20552179 - RSINE1 SINE B4 -38 127 2 6 1568 429 20 0 0 chr6 128965353 128965403 -20551634 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1568 338 320 129 40 chr6 128965439 128965742 -20551295 + L1M4 LINE L1 4884 5213 -933 6 1568 243 209 0 13 chr6 128965824 128965878 -20551159 + B3 SINE B2 10 60 -135 6 1568 400 311 88 27 chr6 128965882 128966213 -20550824 - L1MD LINE L1 -1722 4424 4074 6 1568 2789 173 34 27 chr6 128966277 128966830 -20550207 - RLTR20B3 LTR ERVK 0 577 21 6 1568 301 296 88 20 chr6 128966845 128966993 -20550044 - L1MD LINE L1 -2139 4007 3850 6 1568 398 20 20 0 chr6 128966999 128967050 -20549987 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 6 1568 400 344 33 0 chr6 128967050 128967172 -20549865 - ID_B1 SINE B4 -15 209 84 6 1568 200 360 0 29 chr6 128967703 128967806 -20549231 - L2a LINE L2 -47 3379 3280 6 1568 725 306 71 45 chr6 128968021 128968332 -20548705 + Tigger7 DNA MER2_type 32 350 -2141 6 1568 260 219 51 20 chr6 128970812 128970910 -20546127 - L1_Mus3 LINE L1 0 6638 6538 6 1568 353 272 48 27 chr6 128971000 128971156 -20545881 - RLTR19-int LTR ERVK -25 5381 5241 6 24 36656 67 3 5 chr6 128971542 128977698 -20539339 - L1Md_F3 LINE L1 -14 6570 427 6 1569 1513 160 22 0 chr6 128977914 128978189 -20538848 - RLTR19-int LTR ERVK -2058 4079 3799 6 1569 1323 146 5 18 chr6 128978216 128978439 -20538598 - RLTR19-int LTR ERVK -2434 3703 3484 6 1569 263 144 9 143 chr6 128978923 128979028 -20538009 - RLTR19-int LTR ERVK -2650 3487 3397 6 1569 365 229 29 0 chr6 128979160 128979230 -20537807 - tRNA-Lys-AAG tRNA tRNA -4 72 1 6 1569 927 174 21 52 chr6 128979230 128979424 -20537613 - RMER16-int LTR ERVK -1566 3840 3653 6 1569 216 200 60 23 chr6 128979668 128979801 -20537236 + (TA)n Simple_repeat Simple_repeat 1 138 0 6 1569 335 68 0 0 chr6 128980279 128980323 -20536714 + Lx3_Mus LINE L1 6598 6641 -368 6 1569 245 223 114 18 chr6 128981782 128981896 -20535141 - L1M4 LINE L1 -1037 5109 4985 6 1569 4154 234 35 24 chr6 128981943 128982867 -20534170 + Lx5 LINE L1 6117 7050 0 6 1569 1005 217 39 5 chr6 128982963 128983171 -20533866 - B3 SINE B2 0 216 2 6 1569 618 180 18 0 chr6 128983239 128983350 -20533687 - B1F2 SINE Alu -7 142 30 6 1569 295 276 45 22 chr6 128983270 128983359 -20533678 - B4 SINE B4 -94 198 108 6 1569 461 283 17 0 chr6 128984159 128984279 -20532758 - MER44D DNA MER2_type -550 155 34 6 1569 294 294 64 21 chr6 128984754 128984848 -20532189 + B1F2 SINE Alu 9 106 -43 6 1569 243 209 27 0 chr6 128984873 128984983 -20532054 + (TCTA)n Simple_repeat Simple_repeat 4 116 0 6 1569 360 311 36 6 chr6 128984996 128985161 -20531876 + L1M5 LINE L1 3850 4019 -2127 6 1569 370 320 72 75 chr6 128985190 128985203 -20531834 - L1MC LINE L1 -918 5228 5216 6 1569 378 0 0 0 chr6 128985203 128985245 -20531792 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1569 370 320 72 75 chr6 128985245 128985576 -20531461 - L1MC LINE L1 -931 5215 4885 6 1569 635 252 27 47 chr6 128986119 128986269 -20530768 + RSINE1 SINE B4 3 149 -16 6 1569 180 77 0 0 chr6 128986274 128986300 -20530737 + (CACCAT)n Simple_repeat Simple_repeat 6 31 0 6 1569 5226 124 18 3 chr6 128986334 128987060 -20529977 + RMER19A LTR ERVK 1 737 0 6 1569 324 299 130 5 chr6 128987386 128987571 -20529466 + L1ME1 LINE L1 5937 6144 -35 6 1569 820 208 7 0 chr6 128987583 128987727 -20529310 + B1_Mus2 SINE Alu 1 145 -2 6 1569 592 231 77 0 chr6 128988246 128988376 -20528661 - Lx8 LINE L1 -607 6866 6727 6 1569 1873 175 109 0 chr6 128988377 128988725 -20528312 - ORR1B1 LTR MaLR -8 386 1 6 1569 1181 289 128 39 chr6 128988726 128989320 -20527717 - Lx8 LINE L1 -740 6733 6087 6 1569 268 261 131 18 chr6 128989363 128989531 -20527506 - L1M3d LINE L1 -4810 1081 895 6 1569 2269 185 58 19 chr6 128989707 128990136 -20526901 + RLTR41 LTR ERV1 1 446 0 6 1569 235 299 11 11 chr6 128990216 128990304 -20526733 + (CATA)n Simple_repeat Simple_repeat 3 90 0 6 1569 698 169 41 27 chr6 128990716 128990756 -20526281 - B1_Mus1 SINE Alu 0 148 110 6 1569 3423 67 10 0 chr6 128990756 128991173 -20525864 - BGLII LTR ERVK 0 421 1 7 1569 698 169 41 27 chr6 128991173 128991278 -20525759 - B1_Mus1 SINE Alu -39 109 1 6 1569 384 242 31 10 chr6 128991197 128991293 -20525744 - B4 SINE B4 -125 167 70 7 1569 1809 203 89 45 chr6 128991737 128991757 -20525280 + RLTR12B LTR ERVK 2 21 -507 7 1569 3389 65 7 7 chr6 128991757 128992178 -20524859 - BGLII LTR ERVK 0 421 1 7 1569 1809 203 89 45 chr6 128992178 128992662 -20524375 + RLTR12B LTR ERVK 22 527 -1 7 1569 1131 233 76 86 chr6 128992664 128993072 -20523965 - RMER4A LTR ERVK -62 404 1 7 1569 447 186 20 40 chr6 128993075 128993176 -20523861 - MurERV4-int LTR ERVK -4 5256 5158 7 1569 279 0 0 0 chr6 128993176 128993207 -20523830 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 7 1569 992 258 36 46 chr6 128993245 128993568 -20523469 - MurERV4-int LTR ERVK -3540 1720 1318 7 1569 2637 178 48 27 chr6 128993585 128993605 -20523432 - Lx LINE L1 0 6654 6642 7 1569 659 236 193 67 chr6 128993605 128993932 -20523105 + RLTR9A LTR ERVK 1 368 0 7 1569 2637 178 48 27 chr6 128993932 128994436 -20522601 - Lx LINE L1 -13 6641 6119 7 1569 645 58 0 0 chr6 128994927 128995013 -20522024 + (TA)n Simple_repeat Simple_repeat 2 87 0 7 1569 426 20 0 0 chr6 128996353 128996404 -20520633 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1569 207 237 0 18 chr6 128996438 128996565 -20520472 + (CA)n Simple_repeat Simple_repeat 1 124 0 7 1569 936 119 17 0 chr6 128996565 128996742 -20520295 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1569 207 254 0 40 chr6 128996742 128996760 -20520277 + (CA)n Simple_repeat Simple_repeat 2 19 0 7 1569 366 23 0 0 chr6 128997904 128997947 -20519090 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 7 1569 3717 126 60 17 chr6 128998078 128998709 -20518328 - RMER17A-int LTR ERVK -2 1726 1069 7 1569 1842 138 9 15 chr6 128998750 128999074 -20517963 - RMER17A-int LTR ERVK -635 1093 772 7 1569 257 139 0 0 chr6 128999151 128999194 -20517843 - RMER17A-int LTR ERVK -981 747 705 7 1569 625 171 127 52 chr6 128999438 128999491 -20517546 - RMER17A-int LTR ERVK -1527 201 149 7 1569 993 98 0 0 chr6 128999491 128999634 -20517403 + (GGGA)n Simple_repeat Simple_repeat 3 145 0 7 1569 625 171 127 52 chr6 128999634 128999753 -20517284 - RMER17A-int LTR ERVK -1580 148 16 7 1569 248 93 18 36 chr6 128999768 128999824 -20517213 - RMER17A2 LTR ERVK 0 906 852 7 1569 476 355 51 4 chr6 129000077 129000312 -20516725 - MER2 DNA MER2_type -74 271 26 1 1569 230 370 0 0 chr6 129000696 129000769 -20516268 + PB1D10 SINE Alu 1 73 -44 2 1569 268 329 0 0 chr6 129000707 129000777 -20516260 + ID_B1 SINE B4 93 162 -62 3 1569 1819 237 94 0 chr6 129001274 129001742 -20515295 + RLTR18B LTR ERVK 1 512 0 4 1569 330 402 31 6 chr6 129001803 129001963 -20515074 + MER44C DNA MER2_type 1 164 -569 5 1569 419 278 34 20 chr6 129001985 129002132 -20514905 + MER44C DNA MER2_type 281 429 -304 5 1569 240 170 0 0 chr6 129002196 129002249 -20514788 + CT-rich Low_complexity Low_complexity 2 54 0 6 1569 486 0 0 0 chr6 129004070 129004124 -20512913 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1569 25 0 0 0 chr6 129004668 129004693 -20512344 + AT_rich Low_complexity Low_complexity 1 25 0 8 1569 928 223 40 5 chr6 129004722 129004920 -20512117 - B3 SINE B2 -10 206 2 9 1569 271 321 65 85 chr6 129005361 129005514 -20511523 + B4A SINE B4 39 188 -104 1 1569 183 188 59 59 chr6 129005914 129005965 -20511072 - L2b LINE L2 -1 3374 3324 1 1569 204 340 74 11 chr6 129006017 129006112 -20510925 - MIR SINE MIR -78 130 30 1 1569 211 322 141 61 chr6 129006550 129006748 -20510289 - L2b LINE L2 -22 3353 3140 1 1569 213 211 0 0 chr6 129007451 129007508 -20509529 + A-rich Low_complexity Low_complexity 1 57 0 1 1569 567 256 29 0 chr6 129007686 129007823 -20509214 - B3 SINE B2 -3 213 73 1 1569 2857 16 0 0 chr6 129009651 129009973 -20507064 + RLTRETN_Mm LTR ERVK 1 322 0 1 1569 39934 19 4 4 chr6 129009973 129014817 -20502220 + MMETn-int LTR ERVK 1 4844 0 1 1569 2891 9 0 0 chr6 129014817 129015139 -20501898 + RLTRETN_Mm LTR ERVK 1 322 0 1 1569 324 239 0 22 chr6 129015143 129015233 -20501804 + RMER17C-int LTR ERVK 2684 2771 -467 1 1569 306 0 0 0 chr6 129015393 129015427 -20501610 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1569 390 179 35 23 chr6 129015735 129015821 -20501216 + RLTR28 LTR ERVL 1 87 -437 1 1569 1518 189 41 18 chr6 129015834 129016205 -20500832 + RLTR31A_Mm LTR ERVK 152 692 0 2 1569 1789 214 26 65 chr6 129016206 129016665 -20500372 + RLTR28 LTR ERVL 84 524 0 1 1569 2965 57 8 20 chr6 129017480 129017873 -20499164 + RLTR10 LTR ERVK 1 388 -2 2 1569 1209 45 97 0 chr6 129017875 129018051 -20498986 + RLTR10-int LTR ERVK 1 193 -1794 2 1569 3971 60 0 2 chr6 129018036 129018617 -20498420 + RLTR10-int LTR ERVK 340 992 -995 2 1569 4048 48 0 6 chr6 129018683 129019183 -20497854 + L1Md_F2 LINE L1 6075 6571 -11 2 1569 8132 34 0 4 chr6 129019660 129020661 -20496376 + RLTR10-int LTR ERVK 990 1986 -1 2 1569 2910 54 2 85 chr6 129020661 129021084 -20495953 + RLTR10 LTR ERVK 1 388 -2 2 1569 1630 251 65 82 chr6 129021454 129022252 -20494785 + RMER12 LTR ERVK 1 747 -1101 2 1569 606 229 104 65 chr6 129022280 129022576 -20494461 + RMER12 LTR ERVK 702 1216 -106 2 1569 579 315 18 13 chr6 129023031 129023256 -20493781 + RLTR14-int LTR ERV1 4894 5119 -198 2 1569 1708 226 11 16 chr6 129023476 129023858 -20493179 + RLTR14 LTR ERV1 3 382 0 2 1569 3496 171 180 18 chr6 129023866 129023932 -20493105 + Lx7 LINE L1 3078 3143 -2737 2 1569 396 0 0 0 chr6 129023932 129023976 -20493061 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 1569 3496 171 180 18 chr6 129023976 129024917 -20492120 + Lx7 LINE L1 3144 4248 -1632 2 1569 4789 197 67 73 chr6 129024915 129025136 -20491901 + Lx7 LINE L1 4462 4676 -1204 2 1569 2921 97 5 5 chr6 129025136 129025539 -20491498 - RLTR9D LTR ERVK 0 403 1 2 1569 4789 197 67 73 chr6 129025539 129025709 -20491328 + Lx7 LINE L1 4677 4814 -1066 2 1569 686 220 226 0 chr6 129025709 129025877 -20491160 - B3 SINE B2 -10 206 1 2 1569 7310 206 43 57 chr6 129025877 129028408 -20488629 + Lx7 LINE L1 4815 7339 -357 2 1569 12528 70 29 32 chr6 129028410 129029677 -20487360 + RLTR22_Mus LTR ERVK 1 1309 -499 2 1569 348 24 0 0 chr6 129029677 129029718 -20487319 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1569 12528 70 29 32 chr6 129029718 129030259 -20486778 + RLTR22_Mus LTR ERVK 1310 1804 -4 2 1569 685 228 70 73 chr6 129030287 129030628 -20486409 + Lx7 LINE L1 7356 7695 -1 2 1569 251 204 86 54 chr6 129030702 129030795 -20486242 - Lx9 LINE L1 -8 7636 7541 3 1569 1546 161 44 91 chr6 129030799 129031088 -20485949 - RLTR9A2 LTR ERVK -7 376 104 3 1569 665 279 36 23 chr6 129031088 129031308 -20485729 - LTRIS4 LTR ERV1 0 507 285 3 1569 773 274 46 28 chr6 129031461 129031788 -20485249 - MuRRS4-int LTR ERV1 -33 5030 4698 3 1569 1358 103 27 45 chr6 129031791 129032015 -20485022 - LTRIS2 LTR ERV1 -343 221 2 3 1569 676 216 127 5 chr6 129032015 129032220 -20484817 - MuRRS4-int LTR ERV1 -46 5017 4788 3 1569 2395 221 68 28 chr6 129032211 129032863 -20484174 - MuRRS4-int LTR ERV1 -792 4271 3594 3 1569 2354 66 89 4 chr6 129033219 129033599 -20483438 - MuRRS4-int LTR ERV1 -2032 3031 2364 3 1569 1050 268 59 28 chr6 129033653 129034044 -20482993 - SRV_MM-int LTR ERVK -4043 2124 1722 3 1569 646 105 0 21 chr6 129034311 129034408 -20482629 + RLTR9E LTR ERVK 1 95 -314 3 1569 2699 198 3 30 chr6 129034458 129035093 -20481944 + MMETn-int LTR ERVK 2473 3090 -1754 3 1569 1417 165 11 20 chr6 129035102 129035485 -20481552 + MMETn-int LTR ERVK 6222 6429 -977 3 1569 354 93 0 138 chr6 129035581 129035668 -20481369 + RLTR45-int LTR ERVK 6009 6083 -1161 4 1569 1482 129 16 8 chr6 129035662 129035912 -20481125 + ETnERV3-int LTR ERVK 5529 5780 -28 4 1569 2006 174 141 6 chr6 129035923 129036397 -20480640 + RLTR13D6 LTR ERVK 1 539 -363 4 1569 565 26 0 38 chr6 129036397 129036476 -20480561 + MMETn-int LTR ERVK 7331 7406 0 3 1569 2128 126 71 30 chr6 129036476 129036869 -20480168 + RLTR9E LTR ERVK 1 409 0 3 1569 704 311 86 2 chr6 129037261 129037625 -20479412 + MLT1D LTR MaLR 41 453 -52 4 1569 27 49 0 0 chr6 129037627 129037668 -20479369 + AT_rich Low_complexity Low_complexity 1 41 0 4 1569 821 224 5 65 chr6 129037668 129037684 -20479353 - B3 SINE B2 -38 178 164 4 1569 180 77 0 0 chr6 129037684 129037710 -20479327 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1569 821 224 5 65 chr6 129037710 129037879 -20479158 - B3 SINE B2 -53 163 4 4 1569 604 262 43 0 chr6 129037938 129038079 -20478958 - B1_Mur3 SINE Alu -1 148 2 4 1569 2380 144 21 113 chr6 129038518 129039049 -20477988 - RLTR45 LTR ERVK 0 482 1 4 1569 925 240 50 73 chr6 129039108 129039441 -20477596 + ORR1D1 LTR MaLR 12 374 0 4 1569 1392 210 22 7 chr6 129039445 129039723 -20477314 + RMER15 LTR ERVL 294 575 0 4 1569 521 248 26 46 chr6 129040068 129040220 -20476817 + B1_Mur4 SINE Alu 1 149 -1 5 1569 216 0 0 0 chr6 129040312 129040336 -20476701 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1569 353 331 69 38 chr6 129040338 129040498 -20476539 - RSINE1 SINE B4 0 165 1 5 1569 2755 84 5 11 chr6 129040537 129040910 -20476127 + RLTR9B LTR ERVK 1 371 -66 5 1569 275 290 32 97 chr6 129040936 129041215 -20475822 - ETnERV-int LTR ERVK -3050 264 4 5 1569 426 82 0 32 chr6 129041217 129041280 -20475757 - RLTR9B2 LTR ERVK 0 420 360 5 1569 661 233 16 0 chr6 129041663 129041792 -20475245 - ETnERV2-int LTR ERVK -204 7202 7072 5 1569 791 122 92 0 chr6 129041792 129041923 -20475114 - RLTR9B LTR ERVK -54 383 241 5 1569 515 136 0 36 chr6 129042378 129042462 -20474575 - RLTR9B LTR ERVK -188 249 169 5 1569 241 279 66 0 chr6 129042513 129042574 -20474463 + ID4_ SINE ID 2 66 -17 5 1569 245 193 105 74 chr6 129043698 129043793 -20473244 - LTR50 LTR ERVL -454 341 244 5 1569 342 287 61 23 chr6 129045427 129045559 -20471478 - B1F SINE Alu -8 141 5 5 1569 555 218 0 0 chr6 129045821 129045963 -20471074 + (TA)n Simple_repeat Simple_repeat 1 142 0 6 1569 323 237 0 33 chr6 129046018 129046079 -20470958 + B1_Mur4 SINE Alu 2 60 -90 6 1569 1102 162 0 11 chr6 129046081 129046262 -20470775 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 6 1569 739 301 103 17 chr6 129046315 129046666 -20470371 + L1_Rod LINE L1 5457 5837 -10 6 1569 396 0 0 0 chr6 129047082 129047126 -20469911 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1569 261 57 0 0 chr6 129047150 129047185 -20469852 + (TTG)n Simple_repeat Simple_repeat 1 35 0 6 1569 222 37 0 0 chr6 129047223 129047250 -20469787 + (TTG)n Simple_repeat Simple_repeat 3 29 0 6 1569 881 162 0 0 chr6 129047700 129047842 -20469195 + B1_Mus1 SINE Alu 4 145 -3 6 1569 825 57 0 0 chr6 129048955 129049060 -20467977 + B2_Mm2 SINE B2 1 105 -90 6 1569 321 268 43 31 chr6 129049039 129049201 -20467836 + ORR1B1-int LTR MaLR 591 754 -755 6 1569 1123 63 0 0 chr6 129049099 129049241 -20467796 + B1_Mus1 SINE Alu 7 148 0 6 1569 234 171 0 0 chr6 129049244 129049314 -20467723 + A-rich Low_complexity Low_complexity 1 70 0 7 1569 493 304 64 37 chr6 129049414 129049567 -20467470 + L1MD LINE L1 3851 4005 -2141 7 1569 2003 186 44 7 chr6 129049567 129049973 -20467064 + MTC LTR MaLR 1 421 0 7 1569 493 304 64 37 chr6 129049973 129050300 -20466737 + L1MD LINE L1 4006 4344 -1802 7 1569 28 0 0 0 chr6 129051237 129051265 -20465772 + AT_rich Low_complexity Low_complexity 1 28 0 7 1569 404 338 14 0 chr6 129051278 129051420 -20465617 - B1_Mur1 SINE Alu -4 145 2 7 1569 198 0 0 0 chr6 129051920 129051942 -20465095 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1569 497 254 27 91 chr6 129054025 129054246 -20462791 - RLTR19-int LTR ERVK -401 2837 2631 7 1569 25 0 0 0 chr6 129054533 129054558 -20462479 + AT_rich Low_complexity Low_complexity 1 25 0 7 1569 642 49 0 0 chr6 129054605 129054687 -20462350 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 7 1569 4406 70 26 5 chr6 129055210 129055857 -20461180 - MusHAL1 LINE L1 0 2712 2052 7 1569 383 174 0 25 chr6 129056050 129056146 -20460891 - RLTR19-int LTR ERVK -2947 3190 3129 7 1569 219 103 0 0 chr6 129056158 129056197 -20460840 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1569 469 188 32 113 chr6 129056295 129056481 -20460556 - RLTR19-int LTR ERVK -3084 3053 2883 7 1569 310 275 0 12 chr6 129056547 129056628 -20460409 - RLTR19-int LTR ERVK -3380 2757 2678 7 1569 433 171 108 70 chr6 129056628 129056785 -20460252 - RNLTR23 LTR ERVK 0 642 480 8 1569 850 187 26 41 chr6 129057038 129057233 -20459804 - RLTR19-int LTR ERVK -3452 2685 2494 7 1569 276 318 0 0 chr6 129057371 129057437 -20459600 - MTC-int LTR MaLR -718 540 475 8 1569 1711 154 5 70 chr6 129057437 129057807 -20459230 - RLTR19-int LTR ERVK -4972 1165 820 7 1569 1556 176 98 50 chr6 129057809 129058246 -20458791 - RLTR19-int LTR ERVK -5536 601 144 7 1569 525 230 72 105 chr6 129058386 129058595 -20458442 - RLTR33 LTR ERVK -30 648 447 8 1569 567 0 0 0 chr6 129059603 129059666 -20457371 + (GGA)n Simple_repeat Simple_repeat 3 65 0 8 1569 312 304 108 103 chr6 129060168 129060360 -20456677 - RMER10A LTR ERVL -24 418 216 8 1569 324 0 0 0 chr6 129060360 129060396 -20456641 + (GA)n Simple_repeat Simple_repeat 1 36 0 8 1569 312 304 108 103 chr6 129060396 129060602 -20456435 - RMER10A LTR ERVL -227 215 18 8 1569 442 221 12 0 chr6 129060653 129060739 -20456298 + PB1D7 SINE Alu 33 119 -1 8 1569 421 244 252 0 chr6 129062060 129062175 -20454862 - B1_Mur2 SINE Alu -5 144 1 8 1569 241 186 0 17 chr6 129063347 129063407 -20453630 + (CAGAG)n Simple_repeat Simple_repeat 1 59 0 8 1569 239 253 0 57 chr6 129063416 129063504 -20453533 - L1_Mur3 LINE L1 -1969 3911 3829 9 1569 276 102 0 0 chr6 129063710 129063759 -20453278 + (TC)n Simple_repeat Simple_repeat 2 50 0 9 1569 231 36 0 0 chr6 129063759 129063787 -20453250 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1569 733 242 0 0 chr6 129063787 129063919 -20453118 - B1_Mur3 SINE Alu -13 136 5 9 1569 386 284 0 0 chr6 129064854 129064935 -20452102 + ID4 SINE ID 2 82 -1 9 1569 2149 249 10 9 chr6 129065804 129066335 -20450702 + Lx6 LINE L1 6558 7434 -26 9 1569 24 32 0 0 chr6 129067244 129067275 -20449762 + AT_rich Low_complexity Low_complexity 1 31 0 9 1569 7112 64 11 17 chr6 129067279 129068262 -20448775 - L1_Mus2 LINE L1 -2 6564 5588 9 1569 1201 282 54 15 chr6 129068480 129068887 -20448150 - Lx8 LINE L1 -146 7327 6905 9 1569 570 216 47 16 chr6 129068898 129069025 -20448012 + ID_B1 SINE B4 92 222 -2 9 1569 222 91 0 0 chr6 129069107 129069140 -20447897 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1569 1091 239 65 87 chr6 129070090 129070522 -20446515 + RLTR28B LTR ERVL 3 510 -14 1 1569 261 0 0 0 chr6 129070542 129070571 -20446466 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1569 7591 47 1 3 chr6 129071137 129072227 -20444810 - L1Md_F2 LINE L1 -2 6580 5493 1 1569 251 357 104 42 chr6 129072281 129072474 -20444563 - MIR SINE MIR -56 206 2 1 1569 300 111 0 0 chr6 129073679 129073724 -20443313 + (TATG)n Simple_repeat Simple_repeat 2 46 0 1 1569 17749 74 20 16 chr6 129073893 129076537 -20440500 - L1VL4 LINE L1 0 3559 882 1 1569 1051 88 0 33 chr6 129076537 129076689 -20440348 - B1_Mus1 SINE Alu 0 148 2 1 1569 17749 82 21 46 chr6 129076689 129077109 -20439928 - L1VL4 LINE L1 -5421 881 476 1 1569 801 123 16 10 chr6 129077143 129077300 -20439737 - MT2B LTR ERVL -36 548 388 1 1569 1393 89 0 0 chr6 129077300 129077491 -20439546 - MTB LTR MaLR -2 398 208 1 1569 939 243 14 5 chr6 129078772 129078983 -20438054 - B3 SINE B2 0 216 4 1 1569 1340 165 117 4 chr6 129079857 129080113 -20436924 - ORR1B1 LTR MaLR -105 289 5 1 1569 1045 276 86 25 chr6 129080121 129080713 -20436324 - L1M3 LINE L1 -1142 4998 4371 1 1569 1009 287 9 55 chr6 129080861 129081189 -20435848 - Lx8 LINE L1 -19 7454 7142 1 1569 246 62 0 0 chr6 129081192 129081224 -20435813 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1 1569 754 181 14 14 chr6 129081224 129081364 -20435673 - B1_Mus1 SINE Alu 0 148 9 1 1569 1677 273 188 9 chr6 129081370 129082132 -20434905 - Lx8 LINE L1 -323 7150 6253 1 1569 234 247 51 25 chr6 129083426 129083505 -20433532 - RLTR25B LTR ERVK -190 838 758 1 1569 318 115 0 0 chr6 129083608 129083660 -20433377 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1569 1108 95 0 0 chr6 129083685 129083832 -20433205 + B1_Mus2 SINE Alu 1 147 0 1 1569 318 26 0 0 chr6 129083887 129083926 -20433111 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1569 31714 84 3 6 chr6 129084368 129090150 -20426887 - L1_Mus1 LINE L1 0 6567 799 1 1569 4090 70 0 74 chr6 129090150 129090361 -20426676 - L1_Mus3 LINE L1 -452 6186 6009 1 1569 295 41 41 0 chr6 129090361 129090410 -20426627 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1569 1091 72 0 0 chr6 129090410 129090548 -20426489 - B1_Mm SINE Alu -9 138 1 1 1569 4090 80 0 53 chr6 129090548 129091191 -20425846 - L1_Mus3 LINE L1 -630 6008 5383 1 1569 19448 135 11 59 chr6 129091189 129095442 -20421595 - L1_Mus3 LINE L1 -1232 4651 238 1 1569 402 276 40 114 chr6 129096536 129096712 -20420325 + RSINE1 SINE B4 3 165 0 1 1569 600 154 0 0 chr6 129096712 129096835 -20420202 + (CA)n Simple_repeat Simple_repeat 1 123 0 1 1569 285 29 0 0 chr6 129097754 129097788 -20419249 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1 1569 197 274 113 0 chr6 129097880 129097942 -20419095 - L2a LINE L2 0 3426 3358 1 1569 668 81 0 0 chr6 129097948 129098035 -20419002 + ORR1A3 LTR MaLR 199 285 -41 1 1569 31279 75 1 4 chr6 129098035 129103260 -20413777 + L1Md_F2 LINE L1 289 5589 -297 1 1569 7771 63 2 2 chr6 129103260 129104256 -20412781 + L1Md_F2 LINE L1 5590 6585 0 1 1569 414 91 0 0 chr6 129104256 129104311 -20412726 + ORR1A3 LTR MaLR 272 326 0 1 1569 25 0 0 0 chr6 129104385 129104410 -20412627 + AT_rich Low_complexity Low_complexity 1 25 0 1 1569 1790 201 85 5 chr6 129104412 129104974 -20412063 + RLTR17 LTR ERVK 1 607 -85 1 1569 21 0 0 0 chr6 129105315 129105336 -20411701 + AT_rich Low_complexity Low_complexity 1 21 0 1 1569 189 195 0 0 chr6 129105474 129105515 -20411522 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1569 258 125 0 0 chr6 129105515 129105563 -20411474 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 196 3382 38 2 0 chr6 129105866 129106261 -20410776 - MTA_Mm LTR MaLR 0 396 1 1 1570 33 25 0 0 chr6 129106274 129106314 -20410723 + AT_rich Low_complexity Low_complexity 1 40 0 1 1570 266 291 51 19 chr6 129108236 129108418 -20408619 - L1_Rod LINE L1 -3553 2294 2106 1 1570 203 88 29 0 chr6 129108431 129108465 -20408572 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1570 1230 79 90 0 chr6 129108596 129108774 -20408263 - B2_Mm2 SINE B2 0 195 2 1 1570 500 287 63 18 chr6 129109256 129109447 -20407590 + B3A SINE B2 4 192 -3 1 1570 1644 75 117 12 chr6 129109638 129109894 -20407143 - L1_Mus3 LINE L1 -1 6637 6355 1 1570 251 304 51 0 chr6 129110511 129110590 -20406447 - MLT1H LTR MaLR -466 83 1 1 1570 668 271 0 7 chr6 129110684 129110825 -20406212 + ID_B1 SINE B4 84 223 -1 1 1570 358 216 157 41 chr6 129110901 129111022 -20406015 + B4A SINE B4 123 257 -35 1 1570 420 20 0 0 chr6 129111066 129111115 -20405922 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1570 728 197 0 26 chr6 129111482 129111633 -20405404 - B1_Mus1 SINE Alu -1 147 1 1 1570 495 0 0 0 chr6 129111850 129111905 -20405132 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1570 297 0 0 0 chr6 129111905 129111937 -20405100 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1570 24 0 0 0 chr6 129112454 129112478 -20404559 + AT_rich Low_complexity Low_complexity 1 24 0 1 1570 496 42 28 0 chr6 129112523 129112594 -20404443 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1570 1635 243 50 2 chr6 129112630 129113030 -20404007 + MTD LTR MaLR 1 419 0 1 1570 1750 237 125 31 chr6 129113034 129113547 -20403490 + MTD-int LTR MaLR 5 565 -693 1 1570 833 229 0 107 chr6 129113545 129113629 -20403408 + MTD LTR MaLR 239 321 -100 1 1570 1690 197 66 16 chr6 129113629 129113995 -20403042 + ORR1C2 LTR MaLR 1 384 0 1 1570 833 229 0 107 chr6 129113995 129114115 -20402922 + MTD LTR MaLR 322 421 0 1 1570 259 308 95 40 chr6 129114125 129114336 -20402701 - B4 SINE B4 -63 229 3 1 1570 204 67 0 0 chr6 129114535 129114565 -20402472 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1570 29 0 0 0 chr6 129114623 129114652 -20402385 + AT_rich Low_complexity Low_complexity 1 29 0 1 1570 553 252 71 31 chr6 129114693 129114918 -20402119 - Lx8 LINE L1 -1555 5918 5685 1 1570 33185 65 14 1 chr6 129114917 129120747 -20396290 - L1Md_F2 LINE L1 0 6582 670 1 1570 803 158 0 0 chr6 129120739 129120885 -20396152 - L1Md_F2 LINE L1 -6282 334 189 1 1570 302 266 7 0 chr6 129120913 129121015 -20396022 - Lx7 LINE L1 -592 5699 5589 1 1570 868 239 65 55 chr6 129121180 129121455 -20395582 + RLTR11B LTR ERVK 1 278 -175 1 1570 602 226 30 32 chr6 129121490 129121674 -20395363 + RLTR11B LTR ERVK 284 490 -38 1 1570 475 289 8 0 chr6 129121711 129121839 -20395198 + B1F SINE Alu 1 129 -20 1 1570 1718 241 31 3 chr6 129121946 129122300 -20394737 + MTD LTR MaLR 41 404 -15 1 1570 2432 134 63 24 chr6 129122304 129122718 -20394319 - RLTR23 LTR ERV1 0 430 1 1 1570 488 266 94 0 chr6 129123059 129123187 -20393850 + MTE2b LTR MaLR 1 140 -239 1 1570 392 279 99 33 chr6 129123187 129123211 -20393826 + MT2A LTR ERVL 1 162 -371 1 1570 266 181 23 11 chr6 129123211 129123307 -20393730 + L1MC LINE L1 3735 3832 -2314 1 1570 470 237 58 19 chr6 129123311 129123466 -20393571 + L1MA6 LINE L1 6140 6300 0 1 1570 411 247 8 25 chr6 129123548 129123680 -20393357 + L1MC LINE L1 3964 4093 -2053 1 1570 390 259 36 27 chr6 129123717 129123828 -20393209 - MTEb LTR MaLR -3 376 265 1 1570 665 139 11 28 chr6 129123952 129124130 -20392907 + (TA)n Simple_repeat Simple_repeat 1 175 0 1 1570 3745 199 118 46 chr6 129124133 129125092 -20391945 + RLTR25B LTR ERVK 1 1028 0 1 1570 1145 227 27 82 chr6 129125189 129125592 -20391445 + RLTR42-int LTR ERVK 4499 4879 -643 1 1570 220 220 0 0 chr6 129126298 129126348 -20390689 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1 1570 251 260 53 27 chr6 129126395 129126470 -20390567 - B3 SINE B2 -139 77 1 1 1570 266 282 9 97 chr6 129126525 129126639 -20390398 - Charlie10 DNA MER1_type -590 2232 2129 1 1570 240 342 105 31 chr6 129126715 129126944 -20390093 - Charlie10 DNA MER1_type -2497 325 80 1 1570 1714 249 41 15 chr6 129127071 129127482 -20389555 - RLTR18B LTR ERVK -2 510 89 1 1570 939 307 26 4 chr6 129127752 129127984 -20389053 + B4A SINE B4 1 237 -55 1 1570 343 211 0 21 chr6 129128083 129128180 -20388857 + CT-rich Low_complexity Low_complexity 3 97 0 1 1570 829 74 8 8 chr6 129128182 129128305 -20388732 + (TTTC)n Simple_repeat Simple_repeat 1 123 0 1 1570 414 286 38 0 chr6 129128312 129128417 -20388620 - B3A SINE B2 -36 162 54 1 1570 6074 30 6 1 chr6 129128548 129129272 -20387765 + L1Md_F3 LINE L1 5844 6570 -14 1 1570 4326 110 126 3 chr6 129129659 129130363 -20386674 + L1_Mus2 LINE L1 5776 6566 0 1 1570 23 0 0 0 chr6 129131488 129131511 -20385526 + AT_rich Low_complexity Low_complexity 1 23 0 1 1570 269 26 0 26 chr6 129131612 129131651 -20385386 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1 1570 234 91 0 0 chr6 129131674 129131707 -20385330 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 1 1570 229 220 51 0 chr6 129131711 129131770 -20385267 - PB1D7 SINE Alu -14 106 45 1 1570 323 313 14 29 chr6 129132337 129132475 -20384562 - L1M5 LINE L1 -2164 3982 3847 1 1570 456 333 16 0 chr6 129132505 129132628 -20384409 - ID_B1 SINE B4 -6 218 94 1 1570 325 310 23 0 chr6 129132553 129132640 -20384397 - PB1D10 SINE Alu -28 89 1 1 1570 471 217 8 65 chr6 129132646 129132769 -20384268 - B3A SINE B2 -82 116 1 1 1570 188 286 160 20 chr6 129133292 129133392 -20383645 - L2a LINE L2 -17 3409 3296 1 1570 651 340 53 30 chr6 129133622 129133922 -20383115 + Tigger7 DNA MER2_type 40 346 -2145 1 1570 806 161 77 0 chr6 129136159 129136302 -20380735 + B2_Mm2 SINE B2 6 159 -36 1 1570 217 229 0 62 chr6 129136457 129136522 -20380515 + G-rich Low_complexity Low_complexity 5 65 0 1 1570 354 160 239 28 chr6 129136649 129136758 -20380279 - B2_Mm2 SINE B2 -61 134 3 1 1570 267 246 18 0 chr6 129136989 129137046 -20379991 - B3 SINE B2 -87 129 72 1 1570 528 16 0 0 chr6 129137586 129137647 -20379390 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1570 669 86 0 0 chr6 129137708 129137801 -20379236 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 1 1570 327 104 0 0 chr6 129137801 129137849 -20379188 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1570 288 182 36 0 chr6 129137851 129137906 -20379131 - PB1D9 SINE Alu -1 119 63 1 1570 6179 71 20 0 chr6 129137908 129138836 -20378201 - MusHAL1 LINE L1 -1590 1122 176 1 1570 473 256 50 17 chr6 129138837 129138956 -20378081 + ETnERV2-int LTR ERVK 7074 7196 -210 2 1570 4743 98 135 0 chr6 129139351 129140216 -20376821 - L1VL2 LINE L1 -2527 1088 83 2 1570 747 305 66 26 chr6 129140216 129140535 -20376502 - Lx8 LINE L1 -829 6644 6302 2 1570 5873 241 81 14 chr6 129140537 129140840 -20376197 - Lx8 LINE L1 -96 5784 5450 2 1570 207 0 0 0 chr6 129140840 129140863 -20376174 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1570 5873 241 81 14 chr6 129140863 129141275 -20375762 - Lx8 LINE L1 -431 5449 4979 2 1570 180 0 0 0 chr6 129141275 129141295 -20375742 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2 1570 5873 241 81 14 chr6 129141295 129142549 -20374488 - Lx8 LINE L1 -902 4978 3683 2 1570 762 221 45 21 chr6 129142549 129142835 -20374202 - Lx8 LINE L1 -2879 3001 2709 2 1570 678 302 52 44 chr6 129142844 129143437 -20373600 - Lx8 LINE L1 -4064 1816 1219 2 1570 249 57 0 0 chr6 129143810 129143845 -20373192 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1570 4013 51 26 64 chr6 129143850 129144416 -20372621 - L1Md_F2 LINE L1 -13 6569 6025 2 1570 20072 152 26 21 chr6 129145090 129149856 -20367181 - Lx LINE L1 -5 6649 1875 2 1570 1829 138 51 38 chr6 129149856 129150211 -20366826 + RLTR45 LTR ERVK 1 317 -165 2 1570 428 165 84 44 chr6 129150203 129150355 -20366682 + RLTR45 LTR ERVK 207 317 -165 2 1570 1277 165 58 8 chr6 129150345 129150602 -20366435 + RLTR45 LTR ERVK 213 482 0 2 1570 5518 108 15 2 chr6 129150606 129151999 -20365038 - L1VL2 LINE L1 -2038 1577 175 2 1570 31 0 0 0 chr6 129152689 129152720 -20364317 + AT_rich Low_complexity Low_complexity 1 31 0 2 1570 3436 66 2 0 chr6 129152899 129153338 -20363699 - L1Md_T LINE L1 -1 6581 6142 2 1570 306 338 88 14 chr6 129153362 129153509 -20363528 - MER45A DNA Tip100 -1 177 20 2 1570 670 302 10 5 chr6 129153582 129153785 -20363252 + B3 SINE B2 1 204 -12 2 1570 1622 132 3 149 chr6 129153786 129154141 -20362896 + RMER6B LTR ERVK 1 303 -158 2 1570 1488 218 93 16 chr6 129154373 129154759 -20362278 + MTD LTR MaLR 1 416 -3 2 1570 558 338 26 44 chr6 129154980 129155209 -20361828 + MLT1A0 LTR MaLR 1 225 -140 2 1570 981 326 92 8 chr6 129155319 129155709 -20361328 - MLT1D LTR MaLR -74 431 9 2 1570 13384 30 0 0 chr6 129155726 129158041 -20358996 - L1Md_T LINE L1 0 6582 4268 2 1570 24 0 0 0 chr6 129159562 129159586 -20357451 + AT_rich Low_complexity Low_complexity 1 24 0 2 1570 31 0 0 0 chr6 129159766 129159797 -20357240 + AT_rich Low_complexity Low_complexity 1 31 0 2 1570 330 305 46 69 chr6 129159803 129159851 -20357186 + L1MEg LINE L1 752 800 -5284 2 1570 1997 162 52 6 chr6 129159851 129160216 -20356821 - RLTR14 LTR ERV1 0 382 1 2 1570 330 305 46 69 chr6 129160216 129160385 -20356652 + L1MEg LINE L1 801 964 -5120 2 1570 463 165 15 0 chr6 129161012 129161145 -20355892 + (TA)n Simple_repeat Simple_repeat 2 136 0 2 1570 618 181 0 0 chr6 129161680 129161824 -20355213 + A-rich Low_complexity Low_complexity 4 147 0 2 1570 1732 166 43 57 chr6 129161982 129162334 -20354703 + ORR1C1 LTR MaLR 1 347 -31 2 1570 392 282 24 120 chr6 129162329 129162579 -20354458 - RMER2 LTR ERV1 -4 563 338 2 1570 413 194 0 0 chr6 129163182 129163249 -20353788 + ID4_ SINE ID 15 81 -2 2 1570 26 0 0 0 chr6 129163876 129163902 -20353135 + AT_rich Low_complexity Low_complexity 1 26 0 2 1570 396 0 0 0 chr6 129164405 129164449 -20352588 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1570 319 326 88 28 chr6 129164716 129165255 -20351782 + L1MD LINE L1 2254 2872 -3271 2 1570 594 326 26 67 chr6 129165338 129165532 -20351505 + B4 SINE B4 2 187 -105 2 1570 242 266 15 15 chr6 129166945 129167010 -20350027 - Tigger5 DNA MER2_type -52 2354 2290 2 1570 403 269 118 17 chr6 129167029 129167103 -20349934 + B4A SINE B4 4 95 -197 2 1570 671 67 46 1 chr6 129167103 129167208 -20349829 + B1_Mus1 SINE Alu 1 110 -39 2 1570 283 367 18 0 chr6 129167193 129167302 -20349735 - Tigger5 DNA MER2_type -2295 111 1 2 1570 376 374 106 21 chr6 129167692 129168116 -20348921 + L1M4 LINE L1 859 1318 -5224 2 1570 247 217 83 0 chr6 129168225 129168285 -20348752 - ORR1E LTR MaLR -256 103 39 2 1570 254 193 42 84 chr6 129168403 129168522 -20348515 + Lx5 LINE L1 871 984 -6102 2 1570 437 180 42 73 chr6 129168522 129168677 -20348360 + RMER13B LTR ERVK 1 147 -811 2 1570 13329 174 32 66 chr6 129168685 129170003 -20347034 + Lx5 LINE L1 2244 3528 -3522 2 1570 1060 307 25 31 chr6 129170003 129170363 -20346674 + RLTR17 LTR ERVK 125 482 -210 2 1570 13329 174 32 66 chr6 129170363 129170492 -20346545 + Lx5 LINE L1 3529 3653 -3397 2 1570 270 200 27 122 chr6 129170492 129170566 -20346471 + RLTR31_Mur LTR ERVK 482 548 -5 2 1570 13329 174 32 66 chr6 129170566 129174045 -20342992 + Lx5 LINE L1 3654 7050 0 2 1570 488 180 208 24 chr6 129175141 129175266 -20341771 - B1F2 SINE Alu -1 148 1 2 1570 859 241 19 0 chr6 129175295 129175453 -20341584 + B3A SINE B2 2 162 -36 2 1570 305 304 137 87 chr6 129175483 129175818 -20341219 - L1M4 LINE L1 -871 5275 4924 2 1570 1117 229 9 0 chr6 129176389 129176603 -20340434 + B3 SINE B2 1 216 0 2 1570 23 33 0 0 chr6 129176747 129176777 -20340260 + AT_rich Low_complexity Low_complexity 1 30 0 2 1570 261 218 95 44 chr6 129177239 129177371 -20339666 - MLT2B1 LTR ERVL 0 567 335 2 1570 344 104 15 0 chr6 129177560 129177627 -20339410 + (CCA)n Simple_repeat Simple_repeat 1 68 0 2 1570 393 175 57 28 chr6 129177863 129177969 -20339068 + L1M LINE L1 5302 5410 -881 2 1570 218 295 0 104 chr6 129178310 129178336 -20338701 - ID_B1 SINE B4 -128 96 2 2 1570 245 246 0 138 chr6 129178336 129178416 -20338621 - ID4_ SINE ID -13 70 2 2 1570 229 279 88 12 chr6 129178462 129178542 -20338495 - PB1D7 SINE Alu -22 98 13 2 1570 234 184 0 0 chr6 129178560 129178609 -20338428 + T-rich Low_complexity Low_complexity 1 49 0 2 1570 779 67 0 19 chr6 129178610 129178717 -20338320 - B1_Mus2 SINE Alu -1 146 42 2 1570 356 102 0 63 chr6 129178775 129178838 -20338199 - B1_Mus2 SINE Alu -88 60 2 2 1570 842 54 9 0 chr6 129179459 129179571 -20337466 + (GA)n Simple_repeat Simple_repeat 1 113 0 2 1570 2037 112 0 0 chr6 129180591 129180886 -20336151 + RMER17C-int LTR ERVK 2943 3237 -1 2 1570 1479 135 253 21 chr6 129180901 129181053 -20335984 + RMER17C LTR ERVK 1 184 -226 2 1570 387 0 0 0 chr6 129181053 129181096 -20335941 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1570 1479 135 253 21 chr6 129181096 129181275 -20335762 + RMER17C LTR ERVK 185 408 -2 2 1570 221 345 0 0 chr6 129181284 129181342 -20335695 - ID4_ SINE ID -24 59 2 2 1570 264 258 15 0 chr6 129181357 129181423 -20335614 - B1F SINE Alu -8 141 75 2 1570 480 35 0 0 chr6 129181571 129181629 -20335408 + (GGA)n Simple_repeat Simple_repeat 2 59 0 2 1570 1441 200 107 17 chr6 129182089 129182435 -20334602 + RMER5 LTR ERV1 147 523 -11 2 1570 340 306 62 31 chr6 129182440 129182568 -20334469 - ORR1E LTR MaLR -221 138 7 2 1570 1003 23 0 0 chr6 129183240 129183368 -20333669 - L1Md_T LINE L1 -2 6580 6453 2 1570 225 270 14 0 chr6 129183672 129183746 -20333291 - Lx8 LINE L1 -251 7222 7148 2 1570 1116 123 0 0 chr6 129184286 129184500 -20332537 + (TG)n Simple_repeat Simple_repeat 1 214 0 2 1570 1859 148 14 65 chr6 129184831 129185263 -20331774 + RMER17C LTR ERVK 1 410 0 2 1570 1820 54 66 0 chr6 129186560 129186801 -20330236 + L1Md_F2 LINE L1 6326 6582 0 2 1570 676 310 76 103 chr6 129186811 129187097 -20329940 + MTE2a LTR MaLR 6 283 -96 2 1570 703 221 6 42 chr6 129187097 129187262 -20329775 + ORR1E LTR MaLR 1 159 -200 2 1570 369 0 0 0 chr6 129187668 129187709 -20329328 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1570 312 308 87 40 chr6 129187968 129188117 -20328920 + B3 SINE B2 5 160 -56 2 1570 47 33 0 0 chr6 129188707 129188768 -20328269 + AT_rich Low_complexity Low_complexity 1 61 0 2 1570 455 108 0 24 chr6 129189245 129189330 -20327707 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 2 1570 270 314 93 12 chr6 129190554 129190802 -20326235 + L1MC LINE L1 4210 4477 -1669 2 1570 502 229 25 25 chr6 129191037 129191158 -20325879 + ID_B1 SINE B4 104 224 0 2 1570 264 321 41 9 chr6 129191386 129191606 -20325431 + L1MC LINE L1 4978 5204 -942 2 1570 354 324 80 0 chr6 129191719 129191981 -20325056 + L1MD LINE L1 5323 5605 -2390 2 1570 424 329 58 0 chr6 129192165 129192390 -20324647 + L1MC3 LINE L1 7280 7517 -268 2 1570 243 229 119 12 chr6 129192588 129192672 -20324365 + L1MC3 LINE L1 7677 7769 -16 2 1570 510 137 0 78 chr6 129193034 129193137 -20323900 - PB1D9 SINE Alu -1 119 25 2 1570 537 232 0 9 chr6 129193832 129193945 -20323092 - PB1D7 SINE Alu -4 116 5 2 1570 255 284 133 35 chr6 129195255 129195368 -20321669 - MER34A LTR ERV1 -6 565 482 2 1570 21 0 0 0 chr6 129195428 129195449 -20321588 + AT_rich Low_complexity Low_complexity 1 21 0 2 1570 368 192 0 93 chr6 129195539 129195625 -20321412 + PB1D7 SINE Alu 43 120 0 2 1570 724 141 119 71 chr6 129195844 129196012 -20321025 - B2_Mm2 SINE B2 -11 184 9 2 1570 373 255 80 18 chr6 129195989 129196101 -20320936 + RSINE1 SINE B4 47 165 0 2 1570 207 325 39 0 chr6 129196366 129196443 -20320594 + MIR SINE MIR 67 146 -116 2 1570 800 198 93 39 chr6 129196656 129196861 -20320176 - B3 SINE B2 0 216 1 2 1570 309 365 0 0 chr6 129197202 129197298 -20319739 - MIRb SINE MIR -10 258 163 2 1570 249 324 75 38 chr6 129197472 129197578 -20319459 + PB1D10 SINE Alu 1 110 -7 2 1570 420 125 0 0 chr6 129197762 129197826 -20319211 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1570 195 69 0 0 chr6 129197826 129197855 -20319182 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1570 420 125 0 0 chr6 129197855 129197870 -20319167 + (TC)n Simple_repeat Simple_repeat 2 16 0 2 1570 855 96 41 29 chr6 129197877 129198029 -20319008 - B2_Mm2 SINE B2 -48 168 7 2 1570 378 0 0 0 chr6 129198188 129198230 -20318807 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1570 826 272 112 36 chr6 129198720 129199276 -20317761 - RLTR42-int LTR ERVK -3110 3027 2430 2 1570 993 196 20 76 chr6 129199272 129199576 -20317461 - RLTR42-int LTR ERVK -3356 2166 1880 2 1570 255 152 0 0 chr6 129199625 129199671 -20317366 + CT-rich Low_complexity Low_complexity 3 48 0 2 1570 774 184 0 0 chr6 129199677 129199802 -20317235 - B1_Mur4 SINE Alu -19 131 7 2 1570 241 185 54 36 chr6 129200421 129200477 -20316560 + B1F SINE Alu 3 59 -90 2 1570 823 342 133 22 chr6 129200794 129201012 -20316025 + MER21B LTR ERV1 103 351 -512 2 1570 501 115 0 0 chr6 129201012 129201090 -20315947 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1570 823 342 133 22 chr6 129201090 129201316 -20315721 + MER21B LTR ERV1 352 595 -268 2 1570 1872 226 59 5 chr6 129201317 129201708 -20315329 - MTD LTR MaLR 0 419 8 3 1570 518 280 110 25 chr6 129202020 129202265 -20314772 + MER21-int LTR ERV1 218 483 -3708 2 1570 1328 137 13 4 chr6 129202376 129202611 -20314426 - L1_Mur2 LINE L1 -1435 4442 4206 3 1570 4893 120 64 1 chr6 129202612 129203298 -20313739 + Lx2 LINE L1 6197 6913 -84 3 1570 186 43 0 0 chr6 129203298 129203321 -20313716 + (GGATG)n Simple_repeat Simple_repeat 3 25 0 3 1570 4893 120 64 1 chr6 129203321 129203383 -20313654 + Lx2 LINE L1 6914 6991 -6 3 1570 845 100 8 0 chr6 129203405 129203535 -20313502 + (GGAA)n Simple_repeat Simple_repeat 3 133 0 3 1570 540 246 22 36 chr6 129203536 129203675 -20313362 - B1F SINE Alu -12 137 1 3 1570 477 0 0 0 chr6 129203745 129203798 -20313239 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1570 432 0 0 0 chr6 129203798 129203845 -20313192 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1570 284 284 40 50 chr6 129203855 129203955 -20313082 - B4A SINE B4 -42 250 152 3 1570 287 374 0 0 chr6 129203961 129204092 -20312945 + L1M3 LINE L1 3646 3776 -2364 3 1570 741 216 0 0 chr6 129204804 129204943 -20312094 - B1_Mur2 SINE Alu -8 141 3 3 1570 891 45 0 0 chr6 129205724 129205835 -20311202 + B2_Mm2 SINE B2 2 112 -83 3 1570 255 270 14 0 chr6 129206035 129206109 -20310928 + ERVL-E-int LTR ERVL 2056 2130 -3537 3 1570 312 288 0 0 chr6 129206342 129206415 -20310622 + ID4_ SINE ID 2 74 -9 3 1570 324 280 18 144 chr6 129206706 129206873 -20310164 + B1F SINE Alu 3 148 -1 3 1570 3182 41 15 3 chr6 129207443 129207834 -20309203 + MTA_Mm LTR MaLR 1 396 0 3 1570 828 245 6 6 chr6 129208097 129208261 -20308776 + B3A SINE B2 5 168 -30 3 1570 809 233 6 28 chr6 129208720 129208901 -20308136 + B3A SINE B2 6 182 -16 3 1570 399 41 0 0 chr6 129208905 129208954 -20308083 + (CCA)n Simple_repeat Simple_repeat 2 50 0 3 1570 295 326 88 15 chr6 129209216 129209478 -20307559 + L1M5 LINE L1 5476 5756 -417 3 1570 354 202 26 6 chr6 129209891 129209992 -20307045 - L1MA7 LINE L1 -108 6192 6079 3 1570 244 267 160 0 chr6 129210012 129210087 -20306950 - RSINE1 SINE B4 -6 159 73 3 1570 317 333 0 22 chr6 129210106 129210195 -20306842 - RSINE1 SINE B4 -74 91 5 3 1570 1508 165 48 79 chr6 129210541 129210887 -20306150 + RMER12 LTR ERVK 19 418 -986 3 1570 6310 143 21 15 chr6 129210909 129212011 -20305026 - Lx4A LINE L1 -252 6806 5699 3 1570 582 133 0 0 chr6 129212015 129212105 -20304932 + L1_Mur2 LINE L1 5062 5151 -726 3 1570 1185 231 88 181 chr6 129212109 129212276 -20304761 + RMER12 LTR ERVK 601 795 -527 3 1570 560 14 14 0 chr6 129212276 129212345 -20304692 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1570 1185 231 88 181 chr6 129212345 129212618 -20304419 + RMER12 LTR ERVK 796 992 -330 3 1570 225 65 0 0 chr6 129212618 129212649 -20304388 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1570 1185 231 88 181 chr6 129212649 129212868 -20304169 + RMER12 LTR ERVK 993 1199 -123 3 1570 946 246 120 73 chr6 129212961 129213303 -20303734 + RMER12 LTR ERVK 841 1198 -124 3 1570 2422 91 12 0 chr6 129213475 129213817 -20303220 + BGLII LTR ERVK 76 421 0 3 1570 385 207 0 26 chr6 129213817 129213931 -20303106 + RMER3D-int LTR ERVK 365 475 -2367 3 1570 697 206 89 31 chr6 129213972 129214255 -20302782 + RMER3D-int LTR ERVK 370 583 -2259 3 1570 1307 52 17 0 chr6 129214255 129214429 -20302608 + (GGAGA)n Simple_repeat Simple_repeat 2 178 0 3 1570 599 215 214 46 chr6 129214429 129214722 -20302315 + RMER3D-int LTR ERVK 956 1296 -1546 3 1570 21 0 0 0 chr6 129214738 129214759 -20302278 + AT_rich Low_complexity Low_complexity 1 21 0 3 1570 513 287 15 8 chr6 129215204 129215334 -20301703 - RSINE1 SINE B4 -32 133 3 3 1570 1562 252 119 59 chr6 129216638 129217262 -20299775 - Lx8 LINE L1 -4 7469 6809 3 1570 463 267 10 19 chr6 129218823 129218926 -20298111 - PB1D9 SINE Alu -1 119 18 3 1570 224 122 0 24 chr6 129219491 129219533 -20297504 + (GAA)n Simple_repeat Simple_repeat 2 42 0 3 1570 531 178 0 0 chr6 129220905 129221006 -20296031 + (CATATA)n Simple_repeat Simple_repeat 1 101 0 3 1570 32 43 0 0 chr6 129221066 129221112 -20295925 + AT_rich Low_complexity Low_complexity 1 46 0 3 1570 434 108 14 0 chr6 129221688 129221762 -20295275 + (TATG)n Simple_repeat Simple_repeat 2 76 0 3 1570 879 239 10 5 chr6 129222104 129222297 -20294740 + B3A SINE B2 1 194 -4 3 1570 447 321 106 14 chr6 129222380 129222822 -20294215 + L1ME2 LINE L1 5669 6151 -13 3 1570 278 315 78 11 chr6 129223260 129223350 -20293687 + PB1D7 SINE Alu 16 111 -9 3 1570 32 0 0 0 chr6 129224319 129224351 -20292686 + AT_rich Low_complexity Low_complexity 1 32 0 3 1570 221 354 60 40 chr6 129225788 129225888 -20291149 - MIRm SINE MIR -11 265 164 3 1570 32 57 0 14 chr6 129227082 129227137 -20289900 + AT_rich Low_complexity Low_complexity 1 55 0 3 1570 664 237 81 23 chr6 129227137 129227310 -20289727 - B3A SINE B2 -15 183 1 3 1570 32 57 0 14 chr6 129227310 129227325 -20289712 + AT_rich Low_complexity Low_complexity 1 15 0 3 1570 647 75 11 0 chr6 129227330 129227424 -20289613 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 3 1570 201 175 0 0 chr6 129227427 129227467 -20289570 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 3 1570 387 0 0 0 chr6 129227516 129227559 -20289478 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 3 1570 3472 23 2 0 chr6 129227579 129227973 -20289064 - MTA_Mm LTR MaLR -1 395 1 3 1570 450 0 0 0 chr6 129227977 129228027 -20289010 + (CATAT)n Simple_repeat Simple_repeat 2 51 0 3 1570 312 27 0 0 chr6 129228029 129228066 -20288971 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 3 1570 320 388 0 44 chr6 129228067 129228226 -20288811 - RSINE1 SINE B4 -11 154 3 3 1570 496 382 0 20 chr6 129228480 129228632 -20288405 - RSINE1 SINE B4 -14 151 3 3 1570 486 282 8 0 chr6 129228961 129229078 -20287959 + B1F SINE Alu 9 126 -23 3 1570 595 299 121 21 chr6 129229405 129229644 -20287393 + RMER15 LTR ERVL 273 535 -40 3 1570 427 218 196 61 chr6 129229633 129229827 -20287210 + ORR1B1 LTR MaLR 11 219 -159 3 1570 1160 108 157 0 chr6 129229827 129230012 -20287025 - ORR1B1 LTR MaLR 0 394 181 3 1570 1116 71 0 0 chr6 129230012 129230180 -20286857 + (CA)n Simple_repeat Simple_repeat 1 168 0 3 1570 1903 222 34 24 chr6 129230360 129230775 -20286262 + MTD LTR MaLR 1 419 0 3 1570 1906 197 44 56 chr6 129231083 129231292 -20285745 + MTD LTR MaLR 6 204 -215 3 1570 246 32 0 0 chr6 129231292 129231323 -20285714 + (CAA)n Simple_repeat Simple_repeat 2 32 0 3 1570 1906 197 44 56 chr6 129231323 129231498 -20285539 + MTD LTR MaLR 205 390 -29 3 1570 2577 166 78 0 chr6 129231498 129231961 -20285076 - RLTR19 LTR ERVK 0 499 1 3 1570 1906 197 44 56 chr6 129231961 129231984 -20285053 + MTD LTR MaLR 391 409 -10 3 1570 492 307 85 12 chr6 129232023 129232188 -20284849 - MTEa LTR MaLR -1 378 202 3 1570 558 43 0 0 chr6 129232211 129232280 -20284757 + (GA)n Simple_repeat Simple_repeat 1 69 0 3 1570 214 135 27 0 chr6 129232382 129232419 -20284618 - B3 SINE B2 -177 39 2 3 1570 630 210 17 8 chr6 129232421 129232541 -20284496 - MTEa LTR MaLR -258 121 1 3 1570 282 95 0 0 chr6 129232799 129232841 -20284196 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1570 220 172 32 65 chr6 129233017 129233079 -20283958 + L2c LINE L2 3266 3325 -62 3 1570 205 191 0 0 chr6 129233990 129234032 -20283005 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1570 732 188 0 80 chr6 129234158 129234320 -20282717 - B1_Mur3 SINE Alu 0 149 1 3 1570 194 349 0 34 chr6 129234403 129234492 -20282545 - MIRc SINE MIR -105 163 78 3 1570 342 0 0 0 chr6 129234849 129234887 -20282150 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1570 282 123 0 0 chr6 129236045 129236102 -20280935 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 3 1570 515 16 16 0 chr6 129236104 129236168 -20280869 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1570 279 250 110 14 chr6 129236189 129236262 -20280775 - PB1D10 SINE Alu -29 88 9 3 1570 189 0 0 0 chr6 129236334 129236355 -20280682 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1570 697 298 32 12 chr6 129236471 129236817 -20280220 - L1_Mur2 LINE L1 -912 4965 4613 3 196 658 320 32 11 chr6 129236825 129237195 -20279842 - L1_Rod LINE L1 -1681 4166 3789 3 1571 365 300 91 35 chr6 129237211 129237633 -20279404 + L1_Mur3 LINE L1 4972 5457 -423 3 1571 3390 156 50 76 chr6 129237631 129238327 -20278710 - L1_Mur3 LINE L1 -544 5336 4650 3 1571 345 24 0 0 chr6 129238327 129238369 -20278668 + (TTTTG)n Simple_repeat Simple_repeat 5 46 0 3 1571 3390 156 50 76 chr6 129238369 129238541 -20278496 - L1_Mur3 LINE L1 -1231 4649 4491 3 1571 3451 231 40 34 chr6 129238538 129239330 -20277707 + Lx7 LINE L1 6734 7531 -165 3 1571 465 19 0 0 chr6 129239330 129239384 -20277653 + (TTA)n Simple_repeat Simple_repeat 2 55 0 3 1571 1042 116 0 0 chr6 129239384 129239522 -20277515 - B1_Mus1 SINE Alu -10 138 1 3 1571 3451 231 40 34 chr6 129239522 129239676 -20277361 + Lx7 LINE L1 7532 7686 -10 3 1571 307 202 111 11 chr6 129239703 129239793 -20277244 + L1_Mur3 LINE L1 5429 5527 -320 3 1571 257 301 36 12 chr6 129239795 129239960 -20277077 + L1_Mur3 LINE L1 72 240 -7488 3 1571 459 0 0 0 chr6 129239988 129240039 -20276998 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1571 327 331 12 30 chr6 129240049 129240217 -20276820 + L1_Mur3 LINE L1 121 285 -7443 3 1571 5742 183 52 38 chr6 129240229 129241586 -20275451 + L1_Mur3 LINE L1 861 2222 -3658 3 1571 1186 68 0 0 chr6 129241586 129241733 -20275304 + B1_Mus2 SINE Alu 1 147 0 3 1571 5742 170 64 49 chr6 129241733 129242150 -20274887 + L1_Mur3 LINE L1 2223 2600 -3280 3 1571 1336 257 14 12 chr6 129242152 129242498 -20274539 + Lx6 LINE L1 6381 6727 -733 3 1571 936 247 104 65 chr6 129242499 129243233 -20273804 + RMER12 LTR ERVK 555 1313 -9 3 1571 3749 113 25 25 chr6 129243233 129243870 -20273167 + Lx3B LINE L1 5868 6504 -469 3 1571 450 253 77 27 chr6 129243872 129244055 -20272982 + Lx6 LINE L1 7269 7460 0 3 1571 754 184 0 22 chr6 129244055 129244217 -20272820 + GA-rich Low_complexity Low_complexity 1 158 0 3 1571 1113 89 0 22 chr6 129244217 129244401 -20272636 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1571 754 184 0 22 chr6 129244401 129244421 -20272616 + polypurine Low_complexity Low_complexity 159 178 0 3 1571 181 238 12 12 chr6 129244432 129244513 -20272524 + GA-rich Low_complexity Low_complexity 2 82 0 3 1571 300 284 139 21 chr6 129244518 129244662 -20272375 - RMER5 LTR ERV1 -373 161 1 3 1571 720 212 4 0 chr6 129245088 129245314 -20271723 + CT-rich Low_complexity Low_complexity 1 226 0 3 1571 180 111 0 0 chr6 129245880 129245907 -20271130 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 3 1571 11584 154 43 4 chr6 129245965 129247206 -20269831 + Lx3C LINE L1 782 2061 -3825 3 1571 279 54 0 0 chr6 129247206 129247243 -20269794 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1571 11584 146 64 4 chr6 129247243 129248662 -20268375 + Lx3C LINE L1 2062 3574 -2312 3 1571 5994 141 64 6 chr6 129248648 129249701 -20267336 + Lx3C LINE L1 4925 6029 -947 3 1571 924 9 0 0 chr6 129249701 129249806 -20267231 + (GGGA)n Simple_repeat Simple_repeat 3 107 0 4 1571 5994 142 52 9 chr6 129249806 129250447 -20266590 + Lx3C LINE L1 6030 6714 -262 3 1571 845 221 0 0 chr6 129250447 129250596 -20266441 - B3 SINE B2 -67 149 1 4 1571 2715 64 12 0 chr6 129250638 129250980 -20266057 - ORR1A1 LTR MaLR 0 346 1 4 1571 13215 72 12 6 chr6 129250980 129252760 -20264277 - ORR1A1-int LTR MaLR 0 1792 1 4 1571 2297 57 73 0 chr6 129252764 129253079 -20263958 - ORR1A1 LTR MaLR -8 338 1 4 1571 304 246 146 25 chr6 129253211 129253581 -20263456 - L1MD LINE L1 -831 5528 5120 4 1571 471 277 34 43 chr6 129253967 129254084 -20262953 - B4A SINE B4 -175 117 2 4 1571 288 138 0 0 chr6 129254710 129254775 -20262262 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1571 237 98 0 0 chr6 129254777 129254818 -20262219 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 4 1571 676 315 80 28 chr6 129254846 129255745 -20261292 - L1M4b LINE L1 -3061 3945 3000 4 1571 482 359 52 3 chr6 129256099 129256300 -20260737 - B4A SINE B4 -4 288 81 4 1571 677 387 118 5 chr6 129256308 129256910 -20260127 - Lx8 LINE L1 -3 7470 6801 4 1571 258 32 0 0 chr6 129256933 129256964 -20260073 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1571 475 294 0 12 chr6 129257089 129257251 -20259786 + Lx7 LINE L1 5589 5748 -1948 4 1571 303 253 46 133 chr6 129257237 129257433 -20259604 + Lx9 LINE L1 5797 5975 -1669 4 1571 332 338 81 26 chr6 129257541 129257775 -20259262 + Lx8 LINE L1 6102 6348 -1125 4 1571 3170 109 0 0 chr6 129257787 129258284 -20258753 - L1_Mm LINE L1 -3469 2414 1918 4 1571 229 271 127 0 chr6 129258318 129258436 -20258601 - L1M4b LINE L1 -4698 2310 2178 4 1571 717 257 0 0 chr6 129258480 129258628 -20258409 + B1_Mur2 SINE Alu 1 148 -1 4 1571 471 18 0 0 chr6 129258639 129258695 -20258342 + (CAG)n Simple_repeat Simple_repeat 1 56 0 4 1571 242 196 20 0 chr6 129258706 129258757 -20258280 - B1F SINE Alu -93 56 5 4 1571 460 301 87 113 chr6 129258768 129259184 -20257853 - L1M4b LINE L1 -5246 2088 1684 4 1571 299 378 59 0 chr6 129259258 129259377 -20257660 - B1_Mur1 SINE Alu -21 128 3 4 1571 298 250 43 0 chr6 129259411 129259503 -20257534 - L1M4b LINE L1 -5281 1623 1528 4 1571 277 251 118 40 chr6 129259703 129259848 -20257189 - MLT1A1 LTR MaLR 0 390 231 4 1571 13104 50 3 0 chr6 129260050 129262448 -20254589 - L1Md_F2 LINE L1 -12 6570 4168 4 1571 802 108 0 0 chr6 129262448 129262568 -20254469 + L1_Mur2 LINE L1 4050 4169 -1708 4 1571 433 340 93 71 chr6 129262610 129262933 -20254104 - L1M4b LINE L1 -6033 871 542 4 1571 233 398 9 0 chr6 129262940 129263048 -20253989 - LTR16A LTR ERVL 0 451 343 4 1571 873 191 33 33 chr6 129263252 129263436 -20253601 - B2_Mm2 SINE B2 -10 185 2 4 1571 578 238 8 45 chr6 129263455 129263587 -20253450 - RSINE1 SINE B4 -35 130 4 4 1571 392 199 86 158 chr6 129266123 129266565 -20250472 - RMER17C LTR ERVK 0 410 1 4 1571 259 270 82 32 chr6 129266614 129266699 -20250338 + B1F SINE Alu 23 148 -1 4 1571 493 254 178 52 chr6 129266739 129266930 -20250107 + B3A SINE B2 2 216 0 4 1571 548 338 85 19 chr6 129266984 129267255 -20249782 - MTE-int LTR MaLR -1276 304 16 4 1571 408 130 33 0 chr6 129267313 129267405 -20249632 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 4 1571 306 306 0 0 chr6 129267478 129267550 -20249487 + ID4_ SINE ID 6 77 -6 4 1571 263 317 12 24 chr6 129267550 129267562 -20249475 + ID SINE ID 6 88 -136 4 1571 278 269 84 126 chr6 129267849 129267968 -20249069 + MT2B LTR ERVL 144 257 -344 4 1571 669 214 71 0 chr6 129267877 129268003 -20249034 + B1_Mur2 SINE Alu 14 148 -1 4 1571 22 35 0 0 chr6 129268124 129268153 -20248884 + AT_rich Low_complexity Low_complexity 1 29 0 4 1571 446 296 42 7 chr6 129268153 129268296 -20248741 - RSINE1 SINE B4 -16 149 2 4 1571 307 267 69 10 chr6 129269165 129269267 -20247770 + PB1D9 SINE Alu 1 108 -12 4 1571 298 0 48 0 chr6 129269267 129269309 -20247728 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 4 1571 488 251 183 12 chr6 129269497 129269666 -20247371 - B3A SINE B2 0 198 1 4 1571 264 321 138 52 chr6 129269685 129269859 -20247178 + MLT2D LTR ERVL 85 273 -141 4 1571 213 285 162 39 chr6 129269864 129270043 -20246994 - L2 LINE L2 -469 2950 2750 4 1571 342 0 0 0 chr6 129270714 129270752 -20246285 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1571 520 271 71 7 chr6 129270778 129270919 -20246118 - B3A SINE B2 -48 150 1 4 1571 472 288 60 4 chr6 129270919 129271071 -20245966 - B4A SINE B4 -67 225 68 4 1571 1097 63 21 14 chr6 129271086 129271231 -20245806 - B1_Mus2 SINE Alu 0 147 2 4 1571 427 259 0 0 chr6 129271238 129271323 -20245714 - B4A SINE B4 -203 89 5 4 1571 232 339 22 97 chr6 129271304 129271337 -20245700 - B4A SINE B4 -79 213 91 4 1571 362 296 50 20 chr6 129271337 129271437 -20245600 - PB1D10 SINE Alu -9 108 6 4 1571 489 333 111 4 chr6 129273843 129274105 -20242932 - MER2 DNA MER2_type -47 298 9 4 1571 589 344 85 8 chr6 129274398 129274644 -20242393 + MLT1B LTR MaLR 126 390 0 4 1571 225 94 0 0 chr6 129274842 129274874 -20242163 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1571 321 26 0 0 chr6 129275294 129275332 -20241705 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1571 915 255 15 38 chr6 129275923 129276184 -20240853 + Lx5 LINE L1 6787 7041 -9 4 1571 295 386 138 45 chr6 129276186 129276505 -20240532 + L2a LINE L2 2800 3148 -278 4 1571 319 212 14 43 chr6 129278257 129278326 -20238711 + MER33 DNA MER1_type 6 72 -252 4 1571 206 357 19 48 chr6 129278548 129278651 -20238386 - L2 LINE L2 -862 2557 2458 4 1571 516 323 132 86 chr6 129278654 129278911 -20238126 + B4 SINE B4 5 273 -19 4 1571 513 0 0 0 chr6 129278921 129278978 -20238059 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1571 441 0 0 0 chr6 129278981 129279030 -20238007 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1571 349 294 62 7 chr6 129279434 129279578 -20237459 - Lx8 LINE L1 -432 7041 6890 4 1571 21 0 0 0 chr6 129279875 129279896 -20237141 + AT_rich Low_complexity Low_complexity 1 21 0 4 1571 268 229 98 0 chr6 129280033 129280094 -20236943 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 4 1571 208 274 27 14 chr6 129280199 129280273 -20236764 + GA-rich Low_complexity Low_complexity 2 76 0 4 1571 180 0 0 0 chr6 129281326 129281346 -20235691 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1571 250 311 113 6 chr6 129282190 129282358 -20234679 - Tigger6b DNA MER2_type -51 1546 1361 4 1571 354 179 0 15 chr6 129282424 129282492 -20234545 - MTE2a LTR MaLR 0 379 313 4 1571 558 269 92 91 chr6 129282478 129282770 -20234267 - RMER21B LTR ERV1 -312 635 280 4 1571 498 274 62 31 chr6 129282864 129282992 -20234045 + B4 SINE B4 22 153 -139 4 1571 634 232 58 34 chr6 129282992 129283197 -20233840 - RMER21B LTR ERV1 -1 841 632 4 1571 992 303 82 9 chr6 129284684 129285027 -20232010 + RMER5 LTR ERV1 64 431 -103 4 1571 933 49 41 0 chr6 129285367 129285489 -20231548 + B1_Mus2 SINE Alu 21 147 0 4 1571 717 73 0 0 chr6 129285490 129285586 -20231451 + (TA)n Simple_repeat Simple_repeat 1 96 0 4 1571 262 175 79 97 chr6 129285927 129286041 -20230996 + Lx8 LINE L1 7362 7473 0 4 1571 1118 55 7 20 chr6 129286186 129286335 -20230702 - B1_Mus2 SINE Alu 0 147 1 4 1571 4261 223 65 5 chr6 129286392 129287362 -20229675 + RMER1A Other Other 1 1028 -2 4 1571 1184 68 0 0 chr6 129288308 129288456 -20228581 + B1_Mus1 SINE Alu 1 148 0 4 1571 183 100 0 0 chr6 129288456 129288486 -20228551 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 4 1571 828 172 0 0 chr6 129289102 129289230 -20227807 + B3 SINE B2 3 130 -86 4 1571 7649 32 0 1 chr6 129289420 129290857 -20226180 - L1Md_T LINE L1 0 6582 5147 4 1571 804 304 23 5 chr6 129291330 129291545 -20225492 - B4A SINE B4 -65 227 9 4 1571 362 273 40 11 chr6 129291625 129291799 -20225238 - L1MA6 LINE L1 0 6297 6117 4 1571 2128 236 18 7 chr6 129291941 129292394 -20224643 - Lx5 LINE L1 -5 7045 6588 4 1571 228 182 58 43 chr6 129292393 129292462 -20224575 - Lx6 LINE L1 -1589 5871 5802 4 1571 3327 38 0 2 chr6 129292492 129292889 -20224148 + MTA_Mm LTR MaLR 1 396 0 4 1571 341 148 56 56 chr6 129293292 129293399 -20223638 - Lx9 LINE L1 -6 7638 7532 4 1571 258 81 0 0 chr6 129293402 129293439 -20223598 + (ATG)n Simple_repeat Simple_repeat 2 38 0 4 1571 566 250 0 0 chr6 129294056 129294168 -20222869 - B1_Mur4 SINE Alu -10 140 29 4 1571 455 264 91 62 chr6 129294356 129294566 -20222471 - RLTR9A LTR ERVK 0 368 153 4 1571 344 119 16 33 chr6 129294578 129294639 -20222398 - RLTR9A LTR ERVK -308 60 1 4 1571 251 320 15 52 chr6 129294765 129294900 -20222137 - IAP-d-int LTR ERVK -32 6510 6381 4 1571 391 330 0 0 chr6 129295001 129295192 -20221845 - RLTR6-int LTR ERV1 -117 7661 7471 4 1571 578 117 58 79 chr6 129295195 129295334 -20221703 - RMER16-int LTR ERVK -1769 3637 3502 4 1571 13775 128 14 20 chr6 129295319 129297673 -20219364 - RMER16-int LTR ERVK -2115 3291 952 4 1571 2811 90 22 12 chr6 129297673 129298089 -20218948 + LTRIS4 LTR ERV1 1 420 -87 4 1571 2239 134 46 92 chr6 129298089 129298610 -20218427 + RLTR1B LTR ERV1 1 512 0 4 1571 532 116 58 0 chr6 129298610 129298696 -20218341 + LTRIS4 LTR ERV1 417 507 0 4 1571 2850 142 151 14 chr6 129298696 129299280 -20217757 - RMER16-int LTR ERVK -4451 955 292 4 1571 339 25 0 0 chr6 129299306 129299346 -20217691 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1571 438 284 183 29 chr6 129299750 129299996 -20217041 - RLTR9A LTR ERVK 0 368 85 4 1571 183 191 19 96 chr6 129300354 129300406 -20216631 - L3 LINE CR1 -4311 178 131 4 1571 27 29 0 0 chr6 129300583 129300617 -20216420 + AT_rich Low_complexity Low_complexity 1 34 0 4 1571 23 33 0 0 chr6 129300732 129300762 -20216275 + AT_rich Low_complexity Low_complexity 1 30 0 4 1571 441 0 0 0 chr6 129300830 129300879 -20216158 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1571 411 149 0 0 chr6 129301131 129301205 -20215832 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1571 579 301 7 13 chr6 129301222 129301377 -20215660 - RSINE1 SINE B4 -1 164 11 4 1571 247 333 9 89 chr6 129301478 129301495 -20215542 + PB1 SINE Alu 23 125 -2 5 1571 327 261 11 74 chr6 129301495 129301590 -20215447 + ID_B1 SINE B4 133 221 -3 5 1571 202 228 35 0 chr6 129301659 129301716 -20215321 + (CACAA)n Simple_repeat Simple_repeat 3 61 0 5 1571 629 48 38 9 chr6 129301925 129302031 -20215006 + (TCTA)n Simple_repeat Simple_repeat 3 111 0 5 1571 407 19 19 0 chr6 129302191 129302243 -20214794 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1571 27 29 0 0 chr6 129302345 129302379 -20214658 + AT_rich Low_complexity Low_complexity 1 34 0 5 1571 432 0 0 0 chr6 129303269 129303317 -20213720 + (TGGA)n Simple_repeat Simple_repeat 2 49 0 5 1571 186 50 75 0 chr6 129303899 129303939 -20213098 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1571 1333 160 23 0 chr6 129305270 129305489 -20211548 - URR1B DNA MER1_type -1 224 1 5 1571 503 235 10 0 chr6 129305562 129305660 -20211377 - PB1D7 SINE Alu -5 115 17 5 1571 228 333 0 0 chr6 129305611 129305674 -20211363 - B4A SINE B4 -142 150 88 5 1571 877 189 35 35 chr6 129306214 129306384 -20210653 + B2_Mm2 SINE B2 2 171 -24 5 1571 4027 220 30 37 chr6 129306826 129308861 -20208176 - Lx5 LINE L1 -47 7011 5043 5 1571 769 74 14 22 chr6 129308884 129309022 -20208015 + (TCTA)n Simple_repeat Simple_repeat 3 139 0 5 1571 558 47 0 34 chr6 129309035 129309124 -20207913 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1571 617 278 0 40 chr6 129309125 129309324 -20207713 - Lx6 LINE L1 -46 7414 7224 5 1571 21 0 0 0 chr6 129309762 129309783 -20207254 + AT_rich Low_complexity Low_complexity 1 21 0 5 1571 239 312 26 18 chr6 129309912 129310026 -20207011 + (TG)n Simple_repeat Simple_repeat 2 116 0 5 1571 1157 0 55 0 chr6 129310030 129310193 -20206844 + (TCTA)n Simple_repeat Simple_repeat 2 173 0 5 1571 977 273 30 8 chr6 129310205 129310471 -20206566 - B4 SINE B4 -19 273 2 5 1571 433 64 290 121 chr6 129310655 129310779 -20206258 - B2_Mm2 SINE B2 -4 191 47 5 1571 1329 85 11 0 chr6 129310826 129311002 -20206035 - B2_Mm1t SINE B2 -14 179 2 5 1571 498 267 88 7 chr6 129311172 129311308 -20205729 - B3A SINE B2 -47 151 5 5 1571 263 169 40 16 chr6 129311824 129311950 -20205087 + (TG)n Simple_repeat Simple_repeat 1 129 0 5 1571 180 219 0 0 chr6 129312013 129312054 -20204983 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1571 636 270 63 102 chr6 129312214 129312420 -20204617 - B3A SINE B2 0 198 1 5 1571 255 61 0 0 chr6 129313121 129313154 -20203883 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1571 907 235 25 21 chr6 129313221 129313456 -20203581 - Lx7 LINE L1 -329 7367 7132 5 1571 1385 53 37 0 chr6 129313455 129313645 -20203392 + L1_Mus2 LINE L1 5882 6078 -488 5 1571 1938 171 33 11 chr6 129314116 129314482 -20202555 + ORR1D1 LTR MaLR 1 374 0 5 1571 388 260 15 44 chr6 129316265 129316395 -20200642 + B1F1 SINE Alu 1 122 -25 5 1571 238 222 30 45 chr6 129316556 129316622 -20200415 + MTD LTR MaLR 355 419 0 5 1571 499 195 88 0 chr6 129316622 129316735 -20200302 + ID_B1 SINE B4 102 224 0 5 1571 218 132 19 0 chr6 129316735 129316788 -20200249 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 5 1571 1770 177 34 26 chr6 129318089 129318506 -20198531 + Lx2B LINE L1 6027 6446 -554 5 1571 882 201 237 29 chr6 129318497 129318804 -20198233 + Lx2B LINE L1 6597 6969 -31 5 1571 471 14 27 27 chr6 129318804 129318877 -20198160 + (TAAA)n Simple_repeat Simple_repeat 1 73 0 5 1571 464 0 18 0 chr6 129319199 129319255 -20197782 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1571 438 20 0 0 chr6 129319256 129319307 -20197730 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1571 1057 231 58 18 chr6 129319874 129320152 -20196885 - MTD LTR MaLR -125 294 6 5 1571 261 57 0 0 chr6 129320157 129320192 -20196845 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 5 1571 324 180 24 30 chr6 129320443 129320609 -20196428 + (TA)n Simple_repeat Simple_repeat 1 165 0 5 1571 678 272 96 100 chr6 129320640 129320762 -20196275 - L1MA5 LINE L1 -27 6273 6132 5 1571 216 0 0 0 chr6 129320762 129320786 -20196251 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1571 1097 78 0 0 chr6 129320789 129320930 -20196107 - B1_Mus2 SINE Alu -6 141 1 5 1571 678 272 96 100 chr6 129320930 129321325 -20195712 - L1MA5 LINE L1 -169 6131 5754 5 1571 387 317 0 47 chr6 129321327 129321433 -20195604 - B1F SINE Alu -8 141 41 5 1571 456 304 72 22 chr6 129321623 129321942 -20195095 - L1MA5 LINE L1 -830 5313 4979 5 1571 540 0 0 0 chr6 129321952 129322012 -20195025 + (GA)n Simple_repeat Simple_repeat 2 61 0 5 1571 26 74 0 0 chr6 129322644 129322698 -20194339 + AT_rich Low_complexity Low_complexity 1 54 0 5 1571 1240 217 6 59 chr6 129322887 129323179 -20193858 - Lx6 LINE L1 -207 7489 6949 5 1571 1231 265 89 12 chr6 129323248 129323584 -20193453 + ORR1D2 LTR MaLR 1 362 -8 5 1571 504 0 0 0 chr6 129324496 129324552 -20192485 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 5 1571 28 29 0 0 chr6 129324556 129324591 -20192446 + AT_rich Low_complexity Low_complexity 1 35 0 5 1571 225 126 90 14 chr6 129324591 129324736 -20192301 + (TA)n Simple_repeat Simple_repeat 2 157 0 5 1571 647 337 24 58 chr6 129325152 129325445 -20191592 + B4A SINE B4 8 290 -2 5 1571 632 188 0 0 chr6 129326557 129326669 -20190368 + Lx7 LINE L1 6573 6684 -1012 5 1571 356 125 0 15 chr6 129327924 129327989 -20189048 + (GGA)n Simple_repeat Simple_repeat 1 64 0 5 1571 700 229 115 0 chr6 129328160 129328352 -20188685 - B3 SINE B2 0 216 3 5 1571 668 261 0 0 chr6 129328383 129328517 -20188520 + RSINE1 SINE B4 11 144 -21 5 1571 296 255 147 86 chr6 129328901 129329064 -20187973 - Charlie2a DNA MER1_type -1219 1642 1470 5 1571 240 328 59 32 chr6 129329139 129329263 -20187774 + MIRc SINE MIR 49 177 -91 5 1571 364 247 0 0 chr6 129329736 129329813 -20187224 + ID4 SINE ID 3 79 -4 5 1571 338 107 18 0 chr6 129330815 129330871 -20186166 + (TCC)n Simple_repeat Simple_repeat 2 58 0 5 1571 326 316 11 40 chr6 129330875 129331050 -20185987 + CT-rich Low_complexity Low_complexity 5 174 0 5 1571 254 341 85 0 chr6 129331239 129331368 -20185669 + MT2A LTR ERVL 1 140 -393 5 1571 1383 243 16 26 chr6 129331270 129331582 -20185455 + MTEa LTR MaLR 43 351 -28 5 1571 24 0 0 0 chr6 129331667 129331691 -20185346 + AT_rich Low_complexity Low_complexity 1 24 0 5 1571 360 0 0 0 chr6 129333223 129333263 -20183774 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1571 231 375 28 4 chr6 129333430 129333537 -20183500 + MIRc SINE MIR 65 169 -93 5 1571 402 21 0 0 chr6 129335966 129336013 -20181024 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1571 459 0 0 0 chr6 129336681 129336732 -20180305 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1571 1742 214 28 25 chr6 129336769 129337133 -20179904 - MTD LTR MaLR -14 405 41 5 1571 487 261 0 0 chr6 129339153 129339245 -20177792 + ORR1E LTR MaLR 1 92 -267 5 1571 6151 159 40 2 chr6 129339249 129340643 -20176394 - Lx4B LINE L1 0 7058 5472 5 1571 881 273 21 80 chr6 129340649 129340936 -20176101 + ORR1E LTR MaLR 88 357 -2 5 1571 7537 49 22 8 chr6 129341278 129342241 -20174796 + L1Md_F2 LINE L1 5607 6582 0 5 1571 301 318 47 106 chr6 129342273 129342509 -20174528 + MT2B2 LTR ERVL 57 278 -306 5 1571 926 153 0 14 chr6 129342391 129342537 -20174500 + B1_Mur4 SINE Alu 6 149 -1 5 1571 890 234 0 0 chr6 129342609 129342763 -20174274 + B3A SINE B2 1 154 -44 5 1571 495 0 0 0 chr6 129342764 129342819 -20174218 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1571 510 17 0 0 chr6 129342819 129342877 -20174160 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1571 315 0 0 0 chr6 129342943 129342978 -20174059 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1571 252 308 58 8 chr6 129343489 129343610 -20173427 - PB1 SINE Alu 0 127 1 5 1571 427 268 0 51 chr6 129343933 129344110 -20172927 + G-rich Low_complexity Low_complexity 4 171 0 5 1571 269 261 0 28 chr6 129344633 129344704 -20172333 + ID4_ SINE ID 13 81 -2 5 1571 27 0 0 0 chr6 129344707 129344734 -20172303 + AT_rich Low_complexity Low_complexity 1 27 0 5 1571 1183 68 0 0 chr6 129346295 129346443 -20170594 + B1_Mus1 SINE Alu 1 148 0 5 1571 243 146 0 0 chr6 129346969 129347010 -20170027 + (T)n Simple_repeat Simple_repeat 1 41 0 5 1571 5550 113 90 15 chr6 129348281 129349195 -20167842 + RLTR21 LTR ERVK 1 982 -590 5 1571 225 0 0 0 chr6 129349195 129349220 -20167817 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 5 1571 1232 211 98 63 chr6 129349220 129349538 -20167499 + RLTR21 LTR ERVK 1244 1572 0 5 1571 238 75 29 43 chr6 129349548 129349618 -20167419 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 5 1571 379 299 31 10 chr6 129349758 129349856 -20167181 - RSINE1 SINE B4 -62 103 4 5 1571 441 283 0 0 chr6 129349870 129349969 -20167068 - ID_B1 SINE B4 -8 216 118 5 1571 995 189 82 0 chr6 129350915 129351121 -20165916 - URR1A DNA MER1_type -2 224 2 5 1571 261 0 0 0 chr6 129352895 129352924 -20164113 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1571 272 326 137 0 chr6 129352958 129353053 -20163984 + PB1D10 SINE Alu 1 108 -9 5 1571 423 0 0 0 chr6 129353886 129353933 -20163104 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1571 333 0 0 0 chr6 129353948 129353985 -20163052 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1571 1053 89 6 6 chr6 129354416 129354586 -20162451 - L1_Mus4 LINE L1 -2 6634 6465 5 1571 33 0 0 0 chr6 129354589 129354622 -20162415 + AT_rich Low_complexity Low_complexity 1 33 0 5 1571 1113 69 0 20 chr6 129354622 129354754 -20162283 - B1_Mus1 SINE Alu 0 148 18 5 1571 207 100 0 0 chr6 129354754 129354784 -20162253 + (CCA)n Simple_repeat Simple_repeat 1 30 0 5 1571 1113 69 0 20 chr6 129354784 129354799 -20162238 - B1_Mus1 SINE Alu -131 17 4 5 1571 675 67 0 0 chr6 129355682 129355771 -20161266 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 6 1571 267 262 143 77 chr6 129355771 129355862 -20161175 - PB1D9 SINE Alu -8 112 16 6 1571 207 0 0 0 chr6 129358023 129358046 -20158991 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 1571 241 289 29 110 chr6 129358246 129358382 -20158655 + MLT1I LTR MaLR 116 240 -171 6 1571 265 336 45 18 chr6 129359651 129359763 -20157274 - MLT1D LTR MaLR -388 117 3 6 1571 183 156 0 0 chr6 129360003 129360035 -20157002 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 6 1571 808 307 108 32 chr6 129361572 129362486 -20154551 + L1MD1 LINE L1 5188 6173 -69 6 1571 303 274 14 0 chr6 129362771 129362844 -20154193 + BC1_Mm scRNA scRNA 6 79 -73 6 1571 353 261 198 12 chr6 129363021 129363188 -20153849 + MTEa LTR MaLR 74 271 -108 6 1571 405 305 8 23 chr6 129363914 129364045 -20152992 + ID_B1 SINE B4 74 202 -22 6 1571 645 14 0 0 chr6 129364582 129364656 -20152381 + (GA)n Simple_repeat Simple_repeat 2 75 0 6 1571 21 0 0 0 chr6 129364926 129364947 -20152090 + AT_rich Low_complexity Low_complexity 1 21 0 6 1571 31 0 0 0 chr6 129365103 129365134 -20151903 + AT_rich Low_complexity Low_complexity 1 31 0 6 1571 301 238 194 19 chr6 129365413 129365516 -20151521 - B1F SINE Alu -28 121 1 6 1571 468 0 0 0 chr6 129366201 129366253 -20150784 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 6 1571 1904 95 4 4 chr6 129366318 129366593 -20150444 + RMER17C-int LTR ERVK 2962 3236 -2 6 1571 1502 195 23 72 chr6 129366598 129366796 -20150241 + RMER17C LTR ERVK 1 185 -225 6 1571 198 0 0 0 chr6 129366796 129366818 -20150219 + (TTCTC)n Simple_repeat Simple_repeat 1 22 0 6 1571 1368 67 0 0 chr6 129366821 129367001 -20150036 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1571 1502 195 23 72 chr6 129367001 129367229 -20149808 + RMER17C LTR ERVK 186 406 -4 6 1571 738 87 0 0 chr6 129367776 129367879 -20149158 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 6 196 415 320 69 34 chr6 129367922 129368097 -20148940 - B3A SINE B2 -16 182 2 6 1572 510 276 25 25 chr6 129368906 129369103 -20147934 - RMER10B LTR ERVL -8 390 194 6 1572 734 284 67 16 chr6 129369122 129369376 -20147661 - RMER10B LTR ERVL -131 267 1 6 1572 354 245 125 19 chr6 129370032 129370136 -20146901 + PB1D10 SINE Alu 3 117 0 6 1572 289 88 60 48 chr6 129370756 129370840 -20146197 + (GTGTG)n Simple_repeat Simple_repeat 1 85 0 6 1572 264 181 47 24 chr6 129370842 129370927 -20146110 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 1572 2125 177 55 10 chr6 129371350 129371749 -20145288 - MTC LTR MaLR -4 417 1 6 1572 396 0 0 0 chr6 129375077 129375121 -20141916 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1572 29 0 0 0 chr6 129375840 129375869 -20141168 + AT_rich Low_complexity Low_complexity 1 29 0 6 1572 203 24 22 89 chr6 129377897 129377942 -20139095 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 6 1572 194 176 20 0 chr6 129378283 129378334 -20138703 + CT-rich Low_complexity Low_complexity 4 55 0 6 1572 376 193 79 11 chr6 129378351 129378440 -20138597 - ID_B1 SINE B4 -22 202 108 6 1572 21 0 0 0 chr6 129379464 129379485 -20137552 + AT_rich Low_complexity Low_complexity 1 21 0 6 1572 423 0 0 0 chr6 129380139 129380186 -20136851 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1572 486 269 85 0 chr6 129380377 129380507 -20136530 + B1_Mur2 SINE Alu 1 141 -8 6 1572 453 188 0 0 chr6 129380514 129380658 -20136379 + GA-rich Low_complexity Low_complexity 1 144 0 6 1572 246 303 13 26 chr6 129380679 129380757 -20136280 + ID4_ SINE ID 4 80 -3 6 1572 542 316 87 33 chr6 129381123 129381516 -20135521 + Lx8 LINE L1 5864 6277 -1196 6 1572 354 268 0 0 chr6 129381530 129381601 -20135436 + ID4_ SINE ID 13 83 0 6 1572 1351 89 16 0 chr6 129382343 129382533 -20134504 - B2_Mm2 SINE B2 -2 193 1 6 1572 708 45 0 0 chr6 129383385 129383473 -20133564 + (TG)n Simple_repeat Simple_repeat 1 88 0 6 1572 237 24 71 0 chr6 129384173 129384215 -20132822 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 6 1572 2539 83 16 16 chr6 129385528 129385896 -20131141 - L1_Mus2 LINE L1 0 6566 6199 6 1572 221 159 0 0 chr6 129385991 129386035 -20131002 + A-rich Low_complexity Low_complexity 1 44 0 6 1572 1097 102 0 0 chr6 129387260 129387407 -20129630 - B1_Mm SINE Alu 0 147 1 6 1572 246 205 98 98 chr6 129387469 129387561 -20129476 + MT2B LTR ERVL 169 260 -341 6 1572 593 190 73 16 chr6 129387482 129387605 -20129432 + B1_Mur1 SINE Alu 20 149 0 6 1572 291 302 121 45 chr6 129387660 129387770 -20129267 + ID_B1 SINE B4 74 197 -27 6 1572 270 0 0 0 chr6 129387770 129387800 -20129237 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 6 1572 291 302 121 45 chr6 129387800 129387821 -20129216 + ID_B1 SINE B4 198 214 -10 6 1572 369 221 115 0 chr6 129388449 129388562 -20128475 + L1_Mur3 LINE L1 549 674 -7054 6 1572 11371 182 65 13 chr6 129388564 129391221 -20125816 + L1_Mur3 LINE L1 2486 5280 -600 6 1572 1039 147 80 34 chr6 129391218 129391502 -20125535 + Lx LINE L1 6302 6565 -1 6 1572 221 243 99 36 chr6 129391598 129391709 -20125328 + MIR SINE MIR 8 125 -137 6 1572 947 161 11 0 chr6 129392456 129392630 -20124407 + L1_Mur3 LINE L1 5276 5451 -429 6 1572 1794 191 60 16 chr6 129392627 129393009 -20124028 + Lx7 LINE L1 6513 6911 -785 6 1572 7408 112 2 7 chr6 129393008 129394972 -20122065 + L1_Mus3 LINE L1 4685 6637 -1 6 1572 352 19 38 19 chr6 129394975 129395028 -20122009 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 6 1572 2952 224 13 67 chr6 129395029 129395853 -20121184 + Lx7 LINE L1 6916 7695 -1 6 1572 25 0 0 0 chr6 129396052 129396077 -20120960 + AT_rich Low_complexity Low_complexity 1 25 0 6 1572 228 316 99 30 chr6 129396997 129397098 -20119939 - MIRm SINE MIR -149 127 20 6 1572 25 0 0 0 chr6 129397870 129397895 -20119142 + AT_rich Low_complexity Low_complexity 1 25 0 6 1572 183 285 143 23 chr6 129398969 129399102 -20117935 + L2 LINE L2 2763 2911 -508 6 1572 23 33 0 0 chr6 129400752 129400782 -20116255 + AT_rich Low_complexity Low_complexity 1 30 0 6 1572 216 365 13 13 chr6 129400794 129400869 -20116168 + ID_B1 SINE B4 83 157 -67 6 1572 321 253 143 0 chr6 129400805 129400896 -20116141 + PB1 SINE Alu 13 116 -11 6 1572 258 365 39 23 chr6 129402283 129402412 -20114625 - MIR3 SINE MIR -64 144 14 6 1572 310 295 144 12 chr6 129402652 129402811 -20114226 - MLT1A1 LTR MaLR -14 394 172 6 1572 629 13 13 0 chr6 129402830 129402908 -20114129 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 6 1572 606 168 0 0 chr6 129402946 129403059 -20113978 + (TA)n Simple_repeat Simple_repeat 1 113 0 6 1572 261 0 0 0 chr6 129403059 129403088 -20113949 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1572 210 300 67 0 chr6 129403450 129403510 -20113527 + B1F2 SINE Alu 9 72 -77 6 1572 33914 67 9 5 chr6 129403513 129409633 -20107404 - L1Md_F3 LINE L1 0 6584 440 6 1572 252 258 0 31 chr6 129409679 129409743 -20107294 + GA-rich Low_complexity Low_complexity 2 63 0 6 1572 264 100 0 0 chr6 129409744 129409784 -20107253 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1572 198 357 86 31 chr6 129410136 129410298 -20106739 - L2a LINE L2 -223 3203 3033 6 1572 212 273 30 15 chr6 129410456 129410523 -20106514 - L2a LINE L2 -534 2885 2818 6 1572 541 317 86 24 chr6 129410976 129411231 -20105806 + B4A SINE B4 2 272 -20 6 1572 246 214 86 0 chr6 129411638 129411708 -20105329 - L1MB5 LINE L1 -1 6173 6098 6 1572 242 338 174 6 chr6 129412366 129412522 -20104515 - Lx9 LINE L1 -174 7470 7266 6 1572 219 36 0 0 chr6 129412522 129412550 -20104487 + (CATAC)n Simple_repeat Simple_repeat 5 32 0 6 1572 242 338 174 6 chr6 129412550 129412732 -20104305 - Lx9 LINE L1 -379 7265 7076 6 1572 279 0 0 0 chr6 129412940 129412971 -20104066 + (TTCTG)n Simple_repeat Simple_repeat 4 34 0 6 1572 186 43 0 0 chr6 129412973 129412996 -20104041 + (TGG)n Simple_repeat Simple_repeat 1 23 0 6 1572 252 0 0 0 chr6 129413007 129413035 -20104002 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1572 189 0 0 0 chr6 129414187 129414208 -20102829 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1572 507 107 0 0 chr6 129414269 129414344 -20102693 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 6 1572 320 240 70 51 chr6 129414496 129414654 -20102383 + L1M5 LINE L1 2782 2942 -3204 6 1572 395 331 17 40 chr6 129414665 129414841 -20102196 + L1M5 LINE L1 3035 3206 -2940 6 1572 658 290 74 21 chr6 129415806 129415996 -20101041 + B4A SINE B4 2 201 -91 6 1572 219 69 0 0 chr6 129416001 129416030 -20101007 + (CATA)n Simple_repeat Simple_repeat 4 32 0 6 1572 600 14 0 0 chr6 129416032 129416101 -20100936 + (TC)n Simple_repeat Simple_repeat 1 69 0 6 1572 270 0 0 0 chr6 129416101 129416130 -20100907 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1572 255 296 0 0 chr6 129416311 129416382 -20100655 - ID4 SINE ID -11 72 2 6 1572 614 240 38 15 chr6 129417198 129417329 -20099708 - RSINE1 SINE B4 0 165 32 6 1572 898 240 35 10 chr6 129417878 129418080 -20098957 + B3 SINE B2 1 207 -9 6 1572 7000 53 0 6 chr6 129419587 129420470 -20096567 + L1Md_F2 LINE L1 5693 6570 -12 6 1572 348 339 51 11 chr6 129420706 129420882 -20096155 + MIR SINE MIR 70 252 -10 6 1572 22 0 0 0 chr6 129421418 129421440 -20095597 + AT_rich Low_complexity Low_complexity 1 22 0 6 1572 234 0 0 0 chr6 129422296 129422322 -20094715 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1572 728 119 0 8 chr6 129422329 129422448 -20094589 + (TA)n Simple_repeat Simple_repeat 1 118 0 6 1572 374 0 22 0 chr6 129423618 129423664 -20093373 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1572 241 326 114 49 chr6 129423906 129424090 -20092947 - MER67C LTR ERV1 -294 417 222 6 1572 240 35 0 0 chr6 129424191 129424220 -20092817 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1572 604 81 0 0 chr6 129425114 129425228 -20091809 - L1_Mus1 LINE L1 0 6567 6471 6 1572 329 225 112 0 chr6 129425465 129425545 -20091492 + PB1D10 SINE Alu 24 112 -5 6 1572 1356 73 16 0 chr6 129425585 129425776 -20091261 + L1Md_F2 LINE L1 6376 6569 -13 6 1572 423 221 115 0 chr6 129427582 129427686 -20089351 - B1F2 SINE Alu -1 148 33 6 1572 795 312 26 67 chr6 129427765 129428078 -20088959 - MTE2a LTR MaLR -79 300 1 7 1572 319 262 167 0 chr6 129428078 129428162 -20088875 - B1F SINE Alu -34 115 18 7 1572 422 272 117 0 chr6 129428860 129428963 -20088074 + RSINE1 SINE B4 45 159 -6 7 1572 23 0 0 0 chr6 129428983 129429006 -20088031 + AT_rich Low_complexity Low_complexity 1 23 0 7 1572 573 243 0 0 chr6 129429058 129429165 -20087872 - B1F SINE Alu -6 143 37 7 1572 183 42 0 0 chr6 129429592 129429616 -20087421 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 7 1572 214 335 71 81 chr6 129429659 129429870 -20087167 - MIR SINE MIR -46 216 8 7 1572 447 340 101 49 chr6 129430532 129430860 -20086177 + L1ME2 LINE L1 36 380 -6020 7 1572 281 271 29 0 chr6 129430900 129430970 -20086067 + GA-rich Low_complexity Low_complexity 3 74 0 7 1572 286 85 17 17 chr6 129431201 129431261 -20085776 + (TTTG)n Simple_repeat Simple_repeat 4 63 0 7 1572 714 308 110 4 chr6 129431341 129431595 -20085442 + B4A SINE B4 3 283 -9 7 1572 345 311 38 22 chr6 129431619 129431803 -20085234 + L1ME2 LINE L1 1620 1806 -4609 7 1572 458 255 99 20 chr6 129431812 129431964 -20085073 + RSINE1 SINE B4 1 164 -1 7 1572 213 178 0 0 chr6 129432165 129432210 -20084827 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1572 5843 103 0 27 chr6 129432277 129433230 -20083807 - L1_Mm LINE L1 -1566 4317 3391 7 1572 4536 70 5 2 chr6 129433230 129433817 -20083220 + L1_Mus2 LINE L1 5978 6566 0 7 1572 267 191 0 0 chr6 129433858 129433921 -20083116 + T-rich Low_complexity Low_complexity 1 63 0 7 1572 1144 75 0 0 chr6 129433924 129434070 -20082967 - B1_Mm SINE Alu 0 147 2 7 1572 647 188 9 18 chr6 129434502 129434616 -20082421 - PB1D9 SINE Alu 0 120 8 7 1572 333 337 70 16 chr6 129434633 129434889 -20082148 + L1ME2 LINE L1 4716 4985 -1334 7 1572 360 332 138 28 chr6 129434939 129435229 -20081808 + L1MC LINE L1 4915 5237 -909 7 1572 192 40 0 0 chr6 129435229 129435254 -20081783 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1572 347 335 149 54 chr6 129435254 129435405 -20081632 + L1MC LINE L1 5238 5398 -748 7 1572 981 279 0 5 chr6 129435480 129435696 -20081341 + B3 SINE B2 2 216 0 7 1572 285 317 21 21 chr6 129435724 129435869 -20081168 + Lx6 LINE L1 7260 7404 -56 7 1572 27 49 0 0 chr6 129435890 129435931 -20081106 + AT_rich Low_complexity Low_complexity 1 41 0 7 1572 350 296 98 63 chr6 129435964 129436281 -20080756 + L1ME2 LINE L1 5776 6103 -234 7 1572 637 269 28 0 chr6 129436288 129436433 -20080604 + B1_Mur1 SINE Alu 1 149 0 7 1572 324 0 0 0 chr6 129436649 129436685 -20080352 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1572 377 152 0 9 chr6 129436687 129436793 -20080244 + (TA)n Simple_repeat Simple_repeat 2 106 0 7 1572 1032 234 10 0 chr6 129436901 129437110 -20079927 + B3 SINE B2 1 211 -5 7 1572 1790 177 83 0 chr6 129438407 129438734 -20078303 + ORR1B2 LTR MaLR 1 354 -13 7 1572 544 266 72 56 chr6 129439108 129439303 -20077734 - B3 SINE B2 -17 199 2 7 1572 449 293 90 0 chr6 129439754 129439976 -20077061 + Charlie5 DNA MER1_type 2377 2618 -6 7 1572 732 240 0 0 chr6 129440338 129440484 -20076553 + B1F SINE Alu 2 147 -2 7 1572 256 348 17 42 chr6 129440830 129440950 -20076087 - MIR SINE MIR -27 235 119 7 1572 1132 325 68 20 chr6 129440985 129441466 -20075571 + MT2A LTR ERVL 3 572 -12 7 1572 414 0 0 0 chr6 129442273 129442319 -20074718 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 7 1572 346 189 28 42 chr6 129442333 129442405 -20074632 - B1_Mur2 SINE Alu -35 114 44 7 1572 378 0 0 0 chr6 129442423 129442465 -20074572 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 7 1572 331 147 56 42 chr6 129442491 129442562 -20074475 - B1_Mur2 SINE Alu -35 114 43 7 1572 284 242 0 95 chr6 129442562 129442589 -20074448 - RLTR25A LTR ERVK -509 577 500 7 1572 647 297 0 0 chr6 129443854 129444002 -20073035 + B1F SINE Alu 1 148 -1 7 1572 480 18 0 0 chr6 129444304 129444361 -20072676 + (TC)n Simple_repeat Simple_repeat 2 58 0 7 1572 261 0 0 0 chr6 129444361 129444390 -20072647 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1572 227 274 29 114 chr6 129444430 129444570 -20072467 - MIR SINE MIR -10 252 125 7 1572 1140 349 52 4 chr6 129444627 129445110 -20071927 + MT2A LTR ERVL 11 516 -17 7 1572 567 122 0 0 chr6 129445948 129446038 -20070999 + (TCCC)n Simple_repeat Simple_repeat 1 90 0 7 1572 508 254 59 0 chr6 129446052 129446170 -20070867 - B1_Mus2 SINE Alu -21 126 2 7 1572 263 372 64 32 chr6 129447057 129447182 -20069855 + B4A SINE B4 66 194 -98 7 1572 707 234 0 0 chr6 129447089 129447226 -20069811 + B1F SINE Alu 13 149 0 7 1572 200 29 114 0 chr6 129447376 129447411 -20069626 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1572 351 0 0 0 chr6 129447506 129447545 -20069492 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1572 226 281 0 0 chr6 129447767 129447831 -20069206 + MT2A LTR ERVL 17 80 -453 7 1572 396 0 0 0 chr6 129448828 129448872 -20068165 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 7 1572 526 225 63 0 chr6 129448873 129448984 -20068053 - B1_Mus1 SINE Alu -22 126 9 7 1572 1067 259 54 19 chr6 129450630 129450945 -20066092 + Lx8 LINE L1 7147 7472 -1 7 1572 214 183 33 16 chr6 129450948 129451009 -20066028 + A-rich Low_complexity Low_complexity 1 62 0 7 1572 5637 87 4 5 chr6 129452598 129453409 -20063628 + RLTR22_Mus LTR ERVK 2 811 -997 7 1572 258 318 42 72 chr6 129453688 129453854 -20063183 + RMER12 LTR ERVK 1101 1261 -61 7 1572 358 288 99 120 chr6 129453913 129454430 -20062607 + RLTR12B LTR ERVK 2 512 -15 7 1572 311 328 73 73 chr6 129454614 129454805 -20062232 + Charlie13b DNA Charlie 307 497 -15 7 1572 580 254 28 14 chr6 129454983 129455127 -20061910 - B1F1 SINE Alu -2 147 2 7 1572 699 146 152 16 chr6 129456015 129456140 -20060897 - B1_Mus1 SINE Alu -5 143 2 7 1572 620 26 13 0 chr6 129456259 129456337 -20060700 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 7 1572 813 105 15 22 chr6 129456368 129456504 -20060533 - L1_Mus3 LINE L1 0 6638 6504 7 1572 276 265 58 10 chr6 129456544 129456647 -20060390 - Tigger14a DNA MER2_type -152 172 65 7 1572 360 0 0 0 chr6 129458094 129458134 -20058903 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1572 300 351 99 20 chr6 129458174 129458341 -20058696 - B4 SINE B4 -19 273 106 7 1572 684 224 27 27 chr6 129458551 129458698 -20058339 - B1_Mur1 SINE Alu 0 149 3 7 1572 512 216 18 9 chr6 129458970 129459082 -20057955 - Lx9 LINE L1 -302 7342 7230 7 1572 612 59 0 0 chr6 129459116 129459201 -20057836 + (GA)n Simple_repeat Simple_repeat 1 85 0 7 1572 466 182 58 0 chr6 129459265 129459386 -20057651 + Lx9 LINE L1 7502 7629 -15 7 1572 333 325 74 47 chr6 129459394 129459592 -20057445 + MLT1E2 LTR MaLR 355 596 -57 7 1572 405 0 0 0 chr6 129459592 129459637 -20057400 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1572 280 338 99 82 chr6 129459637 129459691 -20057346 + MLT1E2 LTR MaLR 597 642 -11 7 1572 559 247 130 19 chr6 129459743 129459904 -20057133 + ID_B1 SINE B4 36 214 -10 7 1572 582 267 26 20 chr6 129461016 129461169 -20055868 - B3 SINE B2 0 216 63 7 1572 214 303 32 72 chr6 129461192 129461309 -20055728 - MIRm SINE MIR -144 132 1 7 1572 184 151 107 54 chr6 129461661 129461717 -20055320 - L3 LINE CR1 -2264 2225 2167 7 1572 336 313 25 50 chr6 129462091 129462212 -20054825 - PB1 SINE Alu -9 118 1 7 1572 573 15 0 0 chr6 129462250 129462316 -20054721 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 1572 615 81 0 0 chr6 129463285 129463371 -20053666 + (TG)n Simple_repeat Simple_repeat 1 86 0 7 1572 22 35 0 0 chr6 129463487 129463516 -20053521 + AT_rich Low_complexity Low_complexity 1 29 0 7 1572 198 0 0 0 chr6 129464449 129464471 -20052566 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1572 811 191 13 13 chr6 129465766 129465902 -20051135 + B1_Mur1 SINE Alu 1 137 -12 7 1572 234 0 0 0 chr6 129465902 129465928 -20051109 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 7 1572 811 191 13 13 chr6 129465928 129465940 -20051097 + B1_Mur1 SINE Alu 138 149 0 7 1572 22 0 0 0 chr6 129466020 129466042 -20050995 + AT_rich Low_complexity Low_complexity 1 22 0 7 1572 327 25 0 0 chr6 129468072 129468112 -20048925 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1572 315 0 0 0 chr6 129468725 129468760 -20048277 + (CAA)n Simple_repeat Simple_repeat 2 36 0 7 1572 5235 182 46 21 chr6 129469209 129470271 -20046766 - Lx2B LINE L1 -2 6998 5910 7 1572 1103 133 122 19 chr6 129470271 129470498 -20046539 + Lx2B LINE L1 5697 5968 -391 7 1572 366 297 20 11 chr6 129471267 129471382 -20045655 - B1F SINE Alu -19 130 13 7 1572 304 333 61 91 chr6 129471498 129471762 -20045275 - MTEa LTR MaLR -123 256 1 7 1572 333 231 43 11 chr6 129471947 129472039 -20044998 - RMER5 LTR ERV1 -274 260 166 7 1572 309 264 17 76 chr6 129472036 129472155 -20044882 - RMER5 LTR ERV1 -334 200 89 7 1572 524 207 230 79 chr6 129472395 129472521 -20044516 - PB1D9 SINE Alu 0 149 5 7 1572 3549 172 98 47 chr6 129472522 129473580 -20043457 - RMER12 LTR ERVK -143 1179 1 7 1572 7296 80 63 9 chr6 129474747 129475718 -20041319 + RLTR13D5 LTR ERVK 1 1023 0 7 1572 21 82 0 0 chr6 129476481 129476530 -20040507 + AT_rich Low_complexity Low_complexity 1 49 0 7 1572 221 356 83 25 chr6 129477260 129477381 -20039656 + MIR SINE MIR 8 135 -127 7 1572 335 293 130 10 chr6 129477542 129477742 -20039295 - HAL1 LINE L1 -738 1769 1546 7 1572 24 0 0 0 chr6 129478042 129478066 -20038971 + AT_rich Low_complexity Low_complexity 1 24 0 7 1572 417 264 0 110 chr6 129479791 129479936 -20037101 + MLT1A0 LTR MaLR 53 181 -184 7 1572 1282 40 14 0 chr6 129480738 129480886 -20036151 + B1_Mur4 SINE Alu 1 150 0 7 1572 237 151 0 0 chr6 129480886 129480939 -20036098 + A-rich Low_complexity Low_complexity 1 53 0 7 1572 1198 199 19 9 chr6 129481443 129481656 -20035381 - B3 SINE B2 -1 215 1 7 1572 198 0 0 0 chr6 129484016 129484038 -20032999 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1572 180 293 48 57 chr6 129484985 129485090 -20031947 - MIR SINE MIR -139 123 20 8 1572 189 0 0 0 chr6 129485102 129485123 -20031914 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 8 1572 243 88 0 0 chr6 129486572 129486606 -20030431 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1572 564 331 117 12 chr6 129486980 129487237 -20029800 - B4A SINE B4 0 292 9 8 1572 288 0 0 0 chr6 129489535 129489567 -20027470 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1572 1012 242 49 23 chr6 129489598 129489864 -20027173 - B4 SINE B4 -19 273 1 8 1572 243 222 0 31 chr6 129489898 129489963 -20027074 - L1ME2z LINE L1 0 6444 6382 8 1572 561 315 28 0 chr6 129490089 129490232 -20026805 - B1F SINE Alu -1 148 2 8 1572 752 283 81 36 chr6 129490449 129490757 -20026280 - Lx8 LINE L1 -237 7236 6915 8 1572 347 275 12 12 chr6 129490905 129490986 -20026051 - ID4 SINE ID -1 82 2 8 1572 208 313 9 75 chr6 129490991 129491098 -20025939 + MIRc SINE MIR 134 233 -35 8 1572 495 186 0 0 chr6 129492374 129492471 -20024566 + T-rich Low_complexity Low_complexity 1 97 0 8 1572 182 289 38 19 chr6 129492721 129492774 -20024263 + MER5A DNA MER1_type 45 98 -91 8 1572 315 274 14 0 chr6 129494703 129494776 -20022261 - ID2 SINE ID -8 75 2 8 1572 664 197 0 8 chr6 129495496 129495619 -20021418 + RSINE1 SINE B4 4 125 -40 8 1572 342 0 0 0 chr6 129495634 129495672 -20021365 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1572 324 0 0 0 chr6 129495672 129495707 -20021330 + (GA)n Simple_repeat Simple_repeat 2 37 0 8 1572 377 273 55 0 chr6 129496551 129496661 -20020376 - B3A SINE B2 -26 172 57 8 1572 188 160 70 0 chr6 129497671 129497771 -20019266 + (TA)n Simple_repeat Simple_repeat 2 108 0 8 1572 1411 323 54 36 chr6 129498361 129498984 -20018053 - MTE-int LTR MaLR -48 1532 898 8 1572 23 54 0 0 chr6 129499002 129499039 -20017998 + AT_rich Low_complexity Low_complexity 1 37 0 8 196 1876 248 9 122 chr6 129499134 129499708 -20017329 + RLTR18B LTR ERVK 1 509 -3 8 1573 293 0 27 0 chr6 129499723 129499760 -20017277 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1573 842 173 41 37 chr6 129499797 129499986 -20017051 + B3 SINE B2 1 195 0 8 1573 666 246 73 5 chr6 129500113 129500305 -20016732 + RLTR18-int LTR ERVK 166 370 -4991 1 1573 465 19 0 0 chr6 129500333 129500387 -20016650 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1573 3286 232 37 25 chr6 129500700 129501574 -20015463 + RLTR18-int LTR ERVK 2090 2973 -2388 1 1573 850 207 286 34 chr6 129501592 129501947 -20015090 + MT2A LTR ERVL 102 499 -34 3 1573 243 159 0 0 chr6 129501959 129502022 -20015015 + MT2A LTR ERVL 469 531 -2 3 1573 700 290 40 0 chr6 129503485 129503685 -20013352 - B3 SINE B2 -3 213 6 4 1573 921 249 5 37 chr6 129504322 129504539 -20012498 + B3 SINE B2 2 211 -5 5 1573 399 234 134 14 chr6 129504685 129504811 -20012226 + ORR1D2 LTR MaLR 2 135 -239 6 1573 2355 225 99 27 chr6 129504811 129505510 -20011527 + RLTR22_Mur LTR ERVK 1 749 -1099 7 1573 21 0 0 0 chr6 129505510 129505531 -20011506 + AT_rich Low_complexity Low_complexity 1 21 0 8 1573 227 257 17 95 chr6 129505596 129505712 -20011325 + RLTR22_Mur LTR ERVK 922 1028 -820 7 1573 2752 120 0 25 chr6 129505712 129506152 -20010885 - L1_Mm LINE L1 -2024 3859 3431 9 1573 2944 38 0 3 chr6 129506152 129506499 -20010538 + ORR1A1 LTR MaLR 1 346 0 1 1573 2752 120 0 25 chr6 129506499 129506537 -20010500 - L1_Mm LINE L1 -2453 3430 3393 9 1573 4053 50 0 18 chr6 129506537 129507041 -20009996 + L1_Mus2 LINE L1 6072 6566 0 1 1573 3113 186 22 67 chr6 129507119 129507396 -20009641 + RLTR22_Mur LTR ERVK 1015 1280 -568 7 1573 1779 137 74 62 chr6 129507396 129507586 -20009451 - RMER17C LTR ERVK 0 410 222 1 1573 558 0 0 0 chr6 129507586 129507648 -20009389 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1573 1779 137 74 62 chr6 129507648 129507862 -20009175 - RMER17C LTR ERVK -189 221 1 1 1573 3113 213 40 78 chr6 129507862 129508420 -20008617 + RLTR22_Mur LTR ERVK 804 1669 -179 7 1573 253 283 0 0 chr6 129508431 129508491 -20008546 + ORR1D2 LTR MaLR 155 214 -156 6 1573 241 284 95 73 chr6 129508461 129508486 -20008551 + MT2B LTR ERVL 135 181 -420 1 1573 329 227 0 0 chr6 129508486 129508552 -20008485 + PB1D9 SINE Alu 1 66 -54 1 1573 241 284 95 73 chr6 129508552 129508598 -20008439 + MT2B LTR ERVL 182 274 -327 1 1573 195 129 0 0 chr6 129509609 129509640 -20007397 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1573 6663 114 37 9 chr6 129510978 129512611 -20004426 - Lx LINE L1 -5 6649 4987 1 1573 2177 234 61 55 chr6 129512834 129513523 -20003514 + RLTR18-int LTR ERVK 2096 2788 -2573 1 1573 663 325 145 67 chr6 129513523 129514158 -20002879 - RMER13B LTR ERVK -97 811 96 1 1573 259 309 29 78 chr6 129514244 129514346 -20002691 + RMER1B Other Other 354 450 -616 2 1573 667 220 355 0 chr6 129514383 129514628 -20002409 + RMER1B Other Other 590 921 -145 2 1573 225 164 36 0 chr6 129514662 129514717 -20002320 + RMER1B Other Other 1009 1065 -1 2 1573 2592 172 39 36 chr6 129514718 129515234 -20001803 + RLTR18-int LTR ERVK 2958 3481 -1880 1 1573 1821 179 62 10 chr6 129515234 129515624 -20001413 + RMER17C LTR ERVK 1 410 0 2 1573 2592 172 39 36 chr6 129515624 129515691 -20001346 + RLTR18-int LTR ERVK 3482 3543 -1818 1 1573 276 30 0 0 chr6 129516123 129516156 -20000881 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 2 1573 27 62 0 0 chr6 129516311 129516359 -20000678 + AT_rich Low_complexity Low_complexity 1 48 0 2 1573 21 57 0 0 chr6 129516683 129516718 -20000319 + AT_rich Low_complexity Low_complexity 1 35 0 2 1573 4117 78 9 28 chr6 129516892 129517472 -19999565 - L1_Mus3 LINE L1 -3 6635 6067 2 1573 1372 221 32 20 chr6 129517837 129518184 -19998853 + RLTR18-int LTR ERVK 4125 4475 -886 1 1573 1171 56 0 0 chr6 129518189 129518332 -19998705 + B1_Mus2 SINE Alu 5 147 0 2 1573 261 0 0 0 chr6 129518332 129518361 -19998676 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1573 715 271 25 38 chr6 129518361 129518401 -19998636 + RLTR18-int LTR ERVK 4460 4497 -864 1 1573 183 42 0 0 chr6 129518401 129518425 -19998612 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1573 715 271 25 38 chr6 129518425 129518622 -19998415 + RLTR18-int LTR ERVK 4498 4694 -667 1 1573 2743 191 28 61 chr6 129518640 129519343 -19997694 + RLTR18-int LTR ERVK 4673 5352 -9 1 1573 2160 23 0 0 chr6 129519343 129519602 -19997435 + L1Md_T LINE L1 5328 5586 -297 2 1573 8537 30 0 0 chr6 129519602 129520595 -19996442 + L1Md_T LINE L1 5587 6579 -3 2 1573 25 0 0 0 chr6 129520595 129520620 -19996417 + AT_rich Low_complexity Low_complexity 1 25 0 3 1573 1098 212 17 34 chr6 129520620 129520854 -19996183 + RLTR18B LTR ERVK 4 233 -279 1 1573 1198 238 70 3 chr6 129520891 129521178 -19995859 + RLTR18B LTR ERVK 202 507 -5 1 1573 189 0 0 0 chr6 129522347 129522368 -19994669 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 3 1573 28 0 0 0 chr6 129524415 129524443 -19992594 + AT_rich Low_complexity Low_complexity 1 28 0 3 1573 1099 279 78 117 chr6 129524845 129525486 -19991551 - RLTR18 LTR ERVK 0 616 1 3 1573 233 315 47 41 chr6 129526105 129526160 -19990877 + L1M1 LINE L1 5735 5797 -359 3 1573 402 79 0 0 chr6 129526160 129526223 -19990814 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1573 236 309 21 3 chr6 129526223 129526339 -19990698 + L1M1 LINE L1 5796 5907 -249 3 1573 573 55 0 0 chr6 129526548 129526621 -19990416 + (TTTA)n Simple_repeat Simple_repeat 4 76 0 3 1573 205 156 0 0 chr6 129526621 129526653 -19990384 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 3 1573 519 294 179 81 chr6 129527395 129527854 -19989183 - MER67D LTR ERV1 -1 513 10 3 1573 471 134 0 0 chr6 129527882 129527964 -19989073 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1573 826 242 50 0 chr6 129528491 129528689 -19988348 - B3 SINE B2 -6 210 3 4 1573 180 0 0 0 chr6 129529017 129529037 -19988000 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1573 228 240 10 30 chr6 129529098 129529197 -19987840 + T-rich Low_complexity Low_complexity 2 98 0 4 1573 539 244 16 40 chr6 129529199 129529323 -19987714 - B1_Mur1 SINE Alu -1 148 28 4 1573 288 77 0 0 chr6 129529353 129529392 -19987645 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 4 1573 183 129 0 0 chr6 129529401 129529432 -19987605 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1573 265 348 14 0 chr6 129529432 129529501 -19987536 - ID4 SINE ID -11 72 3 4 1573 378 0 0 0 chr6 129529582 129529624 -19987413 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1573 265 315 0 0 chr6 129529626 129529699 -19987338 + ID4 SINE ID 5 77 -6 4 1573 417 95 0 0 chr6 129530716 129530779 -19986258 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 4 1573 29 0 0 0 chr6 129532327 129532356 -19984681 + AT_rich Low_complexity Low_complexity 1 29 0 5 1573 396 0 0 0 chr6 129532763 129532807 -19984230 + (CAA)n Simple_repeat Simple_repeat 1 44 0 5 1573 499 272 0 8 chr6 129533480 129533606 -19983431 + ID_B1 SINE B4 79 203 -21 5 1573 432 0 0 0 chr6 129533613 129533661 -19983376 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 5 1573 267 31 0 0 chr6 129533696 129533728 -19983309 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 5 1573 1530 209 48 39 chr6 129534370 129534728 -19982309 - RMER13B LTR ERVK -121 787 427 5 1573 640 133 8 8 chr6 129535213 129535334 -19981703 + (TTCC)n Simple_repeat Simple_repeat 3 123 0 5 1573 267 31 0 0 chr6 129536557 129536589 -19980448 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1573 977 40 81 0 chr6 129536610 129536734 -19980303 - B1_Mus1 SINE Alu -13 135 2 5 1573 379 261 125 44 chr6 129537584 129537720 -19979317 + B1F SINE Alu 3 149 0 5 1573 510 31 0 0 chr6 129539085 129539149 -19977888 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1573 324 293 62 47 chr6 129539656 129539785 -19977252 + L1ME3A LINE L1 5931 6061 -112 6 1573 315 0 0 0 chr6 129539963 129539998 -19977039 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1573 257 329 118 0 chr6 129540007 129540083 -19976954 - PB1D10 SINE Alu -31 86 2 6 1573 238 254 17 0 chr6 129541017 129541076 -19975961 + GA-rich Low_complexity Low_complexity 1 60 0 6 1573 203 192 96 0 chr6 129541295 129541347 -19975690 + MIRm SINE MIR 92 148 -128 6 1573 2179 74 3 60 chr6 129543093 129543425 -19973612 + L1_Mus2 LINE L1 6254 6566 0 6 1573 27 81 0 0 chr6 129543645 129543707 -19973330 + AT_rich Low_complexity Low_complexity 1 62 0 6 1573 1641 36 0 0 chr6 129544494 129544686 -19972351 - B2_Mm1t SINE B2 0 193 2 6 1573 1755 97 48 0 chr6 129545862 129546110 -19970927 - L1Md_F2 LINE L1 -10 6572 6313 6 1573 209 22 0 100 chr6 129546132 129546182 -19970855 + (TTA)n Simple_repeat Simple_repeat 2 46 0 7 1573 286 325 40 57 chr6 129546385 129546509 -19970528 - PB1 SINE Alu -5 122 1 7 1573 495 48 0 0 chr6 129547478 129547540 -19969497 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 1573 489 226 72 80 chr6 129547617 129547867 -19969170 + Lx7 LINE L1 7245 7492 -204 7 1573 636 272 7 0 chr6 129547908 129548055 -19968982 + B1_Mur1 SINE Alu 2 149 0 7 1573 795 307 78 28 chr6 129548853 129549469 -19967568 - L1M2 LINE L1 -1596 4547 3901 7 1573 274 413 113 11 chr6 129549663 129549937 -19967100 + MLT1F1 LTR MaLR 126 427 -142 7 1573 6674 160 72 3 chr6 129550065 129550384 -19966653 - L1_Mur1 LINE L1 -304 5582 5244 7 1573 558 0 0 0 chr6 129550384 129550446 -19966591 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1573 6674 160 72 3 chr6 129550446 129551468 -19965569 - L1_Mur1 LINE L1 -643 5243 4149 7 1573 7049 162 44 16 chr6 129551466 129551477 -19965560 + Lx2B LINE L1 5587 5597 -1403 7 1573 3196 63 0 5 chr6 129551477 129551875 -19965162 - MTA_Mm LTR MaLR 0 396 1 8 1573 7049 162 44 16 chr6 129551875 129553233 -19963804 + Lx2B LINE L1 5598 6994 -6 7 1573 304 267 125 79 chr6 129553236 129553476 -19963561 + L1M2 LINE L1 4176 4426 -1717 8 1573 23 68 0 0 chr6 129553542 129553586 -19963451 + AT_rich Low_complexity Low_complexity 1 44 0 8 1573 2455 177 66 9 chr6 129554020 129554551 -19962486 + RLTR31_Mm LTR ERVK 1 561 0 8 1573 231 418 23 0 chr6 129554872 129555049 -19961988 - L1MEf LINE L1 -5711 489 309 8 1573 2424 45 6 25 chr6 129556088 129556408 -19960629 - L1Md_F3 LINE L1 -2 6582 6269 8 1573 261 290 51 51 chr6 129556648 129556746 -19960291 - B1F SINE Alu -51 98 1 8 1573 563 291 7 26 chr6 129557054 129557206 -19959831 + RSINE1 SINE B4 2 150 -15 8 1573 1045 101 24 0 chr6 129557238 129557406 -19959631 + (GGAGAA)n Simple_repeat Simple_repeat 2 173 0 8 1573 3650 44 2 17 chr6 129557589 129558052 -19958985 - L1_Mus1 LINE L1 0 6567 6112 8 1573 588 243 0 9 chr6 129558104 129558216 -19958821 - B3 SINE B2 -86 130 20 9 1573 642 259 21 0 chr6 129559034 129559177 -19957860 - B1_Mur1 SINE Alu -1 148 3 9 1573 678 244 89 25 chr6 129561139 129561341 -19955696 - B3 SINE B2 0 216 2 9 1573 512 330 56 87 chr6 129561391 129561749 -19955288 - MLT1A0 LTR MaLR -1 364 18 9 1573 306 370 96 6 chr6 129561873 129562039 -19954998 - MLT1A0-int LTR MaLR -200 1171 991 9 1573 623 320 46 29 chr6 129563334 129563572 -19953465 + MER2 DNA MER2_type 89 330 -15 9 1573 183 250 12 23 chr6 129563657 129563743 -19953294 + (TG)n Simple_repeat Simple_repeat 1 85 0 9 1573 22 0 0 0 chr6 129563825 129563847 -19953190 + AT_rich Low_complexity Low_complexity 1 22 0 9 1573 310 299 24 0 chr6 129564073 129564200 -19952837 - L1MA6 LINE L1 -5 6295 6166 9 1573 737 311 54 17 chr6 129564957 129565196 -19951841 - B4A SINE B4 -44 248 1 9 1573 897 112 18 12 chr6 129565618 129565781 -19951256 + (TTTC)n Simple_repeat Simple_repeat 1 164 0 9 1573 957 214 0 15 chr6 129565785 129565984 -19951053 - Lx6 LINE L1 0 7460 7265 1 1573 373 301 37 37 chr6 129566015 129566122 -19950915 - ID_B1 SINE B4 -8 216 110 1 1573 450 331 13 32 chr6 129566546 129566702 -19950335 - RSINE1 SINE B4 -2 163 11 1 1573 292 341 22 11 chr6 129567040 129567132 -19949905 - PB1D10 SINE Alu -15 102 10 1 1573 398 318 93 33 chr6 129568400 129568550 -19948487 + B3A SINE B2 5 167 -31 1 1573 501 17 0 0 chr6 129568550 129568608 -19948429 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1573 398 318 93 33 chr6 129568608 129568639 -19948398 + B3A SINE B2 168 197 -1 1 1573 6819 62 1 5 chr6 129568676 129569557 -19947480 + L1Md_F2 LINE L1 5693 6570 -12 1 1573 200 154 0 110 chr6 129570314 129570387 -19946650 + T-rich Low_complexity Low_complexity 2 66 0 1 1573 228 122 39 39 chr6 129570328 129570379 -19946658 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1 1573 720 160 26 13 chr6 129570392 129570544 -19946493 - Lx3B LINE L1 -2 6971 6818 1 1573 522 273 29 7 chr6 129570607 129570747 -19946290 - ID_B1 SINE B4 0 224 82 1 1573 516 229 18 0 chr6 129572663 129572772 -19944265 - PB1D9 SINE Alu -6 114 4 1 1573 229 82 41 0 chr6 129574775 129574824 -19942213 + (TTATA)n Simple_repeat Simple_repeat 2 52 0 1 1573 682 230 37 97 chr6 129574829 129575046 -19941991 + B3 SINE B2 4 207 -9 1 1573 1137 247 18 128 chr6 129575071 129575675 -19941362 - Lx9 LINE L1 -1 7643 7106 1 1573 1060 245 50 17 chr6 129575677 129575976 -19941061 + Lx9 LINE L1 6699 7007 -637 1 1573 371 306 45 76 chr6 129576947 129577145 -19939892 - B3A SINE B2 -5 193 2 1 1573 698 286 83 76 chr6 129577956 129578100 -19938937 - L1_Mur3 LINE L1 -1776 4104 3939 1 1573 361 77 46 0 chr6 129578100 129578165 -19938872 + (TCTCTG)n Simple_repeat Simple_repeat 2 69 0 1 1573 698 284 70 39 chr6 129578165 129578548 -19938489 - L1_Mur3 LINE L1 -1942 3938 3600 1 1573 437 277 203 14 chr6 129578580 129578866 -19938171 - Lx9 LINE L1 -33 7611 7272 1 1573 896 299 89 11 chr6 129578986 129579334 -19937703 - MTE2a LTR MaLR -4 375 1 1 1573 405 307 98 6 chr6 129579334 129579498 -19937539 - MTE2a-int LTR MaLR 0 1580 1402 1 1573 286 314 26 35 chr6 129579843 129580060 -19936977 + MLT-int LTR MaLR 1443 1703 -32 1 1573 454 203 7 7 chr6 129581148 129581297 -19935740 + GA-rich Low_complexity Low_complexity 3 151 0 1 1573 10964 20 4 19 chr6 129581323 129582670 -19934367 - L1Md_T LINE L1 -1277 4606 3280 1 1573 8286 33 1 0 chr6 129582671 129583662 -19933375 + L1Md_T LINE L1 4595 5586 -297 1 1573 7978 47 3 8 chr6 129583662 129584661 -19932376 + L1Md_T LINE L1 5587 6580 -2 1 1573 757 321 34 51 chr6 129585340 129585632 -19931405 - MTE2b LTR MaLR 0 379 93 1 1573 216 204 68 0 chr6 129585759 129585803 -19931234 - L2c LINE L2 -34 3353 3307 1 1573 25 31 0 0 chr6 129585946 129585978 -19931059 + AT_rich Low_complexity Low_complexity 1 32 0 1 1573 25 75 0 0 chr6 129586218 129586271 -19930766 + AT_rich Low_complexity Low_complexity 1 53 0 1 1573 626 264 14 7 chr6 129586414 129586555 -19930482 + B3A SINE B2 2 143 -55 1 1573 265 385 28 0 chr6 129586710 129586819 -19930218 + RMER15-int LTR ERVL 90 201 -4798 1 1573 412 311 22 7 chr6 129586893 129587029 -19930008 + RMER15-int LTR ERVL 1482 1619 -3380 1 1573 336 331 14 36 chr6 129587467 129587605 -19929432 + RMER15-int LTR ERVL 1987 2121 -2878 1 1573 1023 326 41 29 chr6 129587963 129588374 -19928663 + RMER15-int LTR ERVL 4178 4593 -406 1 1573 23 54 0 0 chr6 129588865 129588902 -19928135 + AT_rich Low_complexity Low_complexity 1 37 0 1 1573 22 0 0 0 chr6 129589685 129589707 -19927330 + AT_rich Low_complexity Low_complexity 1 22 0 1 1573 400 288 75 54 chr6 129590688 129590927 -19926110 + L1ME3A LINE L1 5790 6033 -140 1 1573 354 214 74 115 chr6 129591168 129591192 -19925845 + MT2B LTR ERVL 137 154 -447 1 1573 805 177 13 52 chr6 129591192 129591346 -19925691 + B1_Mur4 SINE Alu 1 146 -1 1 1573 22 88 0 0 chr6 129593749 129593806 -19923231 + AT_rich Low_complexity Low_complexity 1 57 0 1 1573 28 48 0 0 chr6 129593907 129593949 -19923088 + AT_rich Low_complexity Low_complexity 1 42 0 1 1573 1070 257 55 59 chr6 129594565 129595004 -19922033 - Lx7 LINE L1 0 7696 7260 1 1573 6994 91 10 2 chr6 129595010 129596572 -19920465 - L1_Mus1 LINE L1 -1 6566 4988 1 1573 2967 221 62 7 chr6 129596592 129597304 -19919733 - Lx7 LINE L1 -453 7243 6493 1 1573 22 56 0 0 chr6 129597365 129597401 -19919636 + AT_rich Low_complexity Low_complexity 1 36 0 1 1573 330 324 78 0 chr6 129597916 129598058 -19918979 - B4A SINE B4 -51 241 89 1 1573 919 177 88 53 chr6 129598070 129598297 -19918740 + RMER17C LTR ERVK 176 410 0 1 1573 247 333 13 0 chr6 129598311 129598389 -19918648 - B4A SINE B4 -208 84 6 1 1573 35 41 0 0 chr6 129599161 129599210 -19917827 + AT_rich Low_complexity Low_complexity 1 49 0 1 1573 206 191 0 60 chr6 129599887 129599954 -19917083 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 1 1573 755 284 166 19 chr6 129600501 129600863 -19916174 - MTD LTR MaLR 0 419 5 1 1573 295 280 28 74 chr6 129600867 129600975 -19916062 + PB1D10 SINE Alu 3 105 -44 1 1573 2155 257 32 4 chr6 129601905 129602398 -19914639 - RLTR18B LTR ERVK -5 507 1 1 1573 23 0 0 0 chr6 129602987 129603010 -19914027 + AT_rich Low_complexity Low_complexity 1 23 0 1 1573 4290 106 22 2 chr6 129604485 129605126 -19911911 + Lx3_Mus LINE L1 6348 7001 -8 1 1573 241 296 27 27 chr6 129605375 129605448 -19911589 + PB1D7 SINE Alu 48 120 0 1 1573 318 337 102 0 chr6 129605470 129605568 -19911469 + RSINE1 SINE B4 11 118 -47 1 1573 507 45 0 0 chr6 129605599 129605665 -19911372 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1573 211 248 58 0 chr6 129605895 129606016 -19911021 + (TA)n Simple_repeat Simple_repeat 2 129 0 1 1573 225 119 50 17 chr6 129605958 129606018 -19911019 + (TTATA)n Simple_repeat Simple_repeat 3 64 0 1 1573 26 0 0 0 chr6 129606161 129606187 -19910850 + AT_rich Low_complexity Low_complexity 1 26 0 1 1573 885 212 61 5 chr6 129607976 129608189 -19908848 - URR1B DNA MER1_type 0 225 1 1 1573 225 0 0 0 chr6 129608483 129608508 -19908529 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 1 1573 22 88 0 0 chr6 129611016 129611073 -19905964 + AT_rich Low_complexity Low_complexity 1 57 0 1 1573 28 48 0 0 chr6 129611174 129611216 -19905821 + AT_rich Low_complexity Low_complexity 1 42 0 1 1573 1070 257 55 59 chr6 129611832 129612271 -19904766 - Lx7 LINE L1 0 7696 7260 1 1573 6999 92 13 2 chr6 129612277 129613839 -19903198 - L1_Mus1 LINE L1 -1 6566 4988 1 1573 2952 226 60 10 chr6 129613859 129614582 -19902455 - Lx7 LINE L1 -453 7243 6485 1 1573 489 333 47 34 chr6 129615184 129615324 -19901713 - B4A SINE B4 -51 241 97 1 1573 1526 148 40 170 chr6 129615324 129615795 -19901242 + RMER17C LTR ERVK 1 410 0 1 1573 489 333 47 34 chr6 129615795 129615887 -19901150 - B4A SINE B4 -196 96 6 1 1573 35 41 0 0 chr6 129616658 129616707 -19900330 + AT_rich Low_complexity Low_complexity 1 49 0 1 1573 453 198 0 0 chr6 129617382 129617488 -19899549 + (TA)n Simple_repeat Simple_repeat 2 107 0 1 1573 750 280 182 20 chr6 129618014 129618371 -19898666 - MTD LTR MaLR 0 419 5 1 1573 326 285 30 77 chr6 129618375 129618518 -19898519 + B1F SINE Alu 3 147 0 1 1573 221 243 153 28 chr6 129619176 129619248 -19897789 + ID2 SINE ID 3 83 0 1 1573 2158 259 32 6 chr6 129619430 129619924 -19897113 - RLTR18B LTR ERVK -5 507 1 1 1573 24 0 0 0 chr6 129619948 129619972 -19897065 + AT_rich Low_complexity Low_complexity 1 24 0 1 1573 22 0 0 0 chr6 129620512 129620534 -19896503 + AT_rich Low_complexity Low_complexity 1 22 0 1 1573 7994 36 0 0 chr6 129620937 129621893 -19895144 + L1Md_T LINE L1 5625 6580 -2 1 1573 4284 108 22 2 chr6 129622979 129623620 -19893417 + Lx3_Mus LINE L1 6348 7001 -8 1 1573 189 74 0 0 chr6 129623930 129623957 -19893080 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 1 1573 308 361 101 0 chr6 129623964 129624083 -19892954 + RSINE1 SINE B4 11 141 -24 1 1573 423 56 0 0 chr6 129624096 129624150 -19892887 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1573 220 141 46 15 chr6 129624441 129624506 -19892531 + (TTATA)n Simple_repeat Simple_repeat 3 69 0 1 1573 26 0 0 0 chr6 129624649 129624675 -19892362 + AT_rich Low_complexity Low_complexity 1 26 0 1 1573 864 217 61 5 chr6 129626464 129626677 -19890360 - URR1B DNA MER1_type 0 225 1 1 1573 180 0 0 0 chr6 129626970 129626990 -19890047 + (TAAAA)n Simple_repeat Simple_repeat 5 24 0 1 1573 222 37 0 0 chr6 129629078 129629105 -19887932 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1 1573 185 261 28 42 chr6 129629992 129630064 -19886973 + MIRb SINE MIR 190 260 -8 1 1574 189 0 0 0 chr6 129631153 129631174 -19885863 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1574 21 36 0 0 chr6 129631434 129631462 -19885575 + AT_rich Low_complexity Low_complexity 1 28 0 1 1574 736 293 15 0 chr6 129631479 129631677 -19885360 - B3 SINE B2 -15 201 1 1 1574 201 74 0 0 chr6 129632057 129632084 -19884953 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 1 1574 333 171 0 0 chr6 129632085 129632173 -19884864 + A-rich Low_complexity Low_complexity 4 91 0 1 1574 585 247 91 91 chr6 129632225 129632412 -19884625 + B3 SINE B2 6 192 -24 1 1574 267 79 0 0 chr6 129632413 129632451 -19884586 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 1 1574 304 296 59 117 chr6 129632824 129633046 -19883991 - RLTR12B LTR ERVK -199 329 121 1 1574 859 227 48 53 chr6 129633186 129633414 -19883623 + MTE2a LTR MaLR 151 377 -2 1 1574 655 282 72 76 chr6 129633902 129634033 -19883004 - ID_B1 SINE B4 -1 223 103 1 1574 2043 186 46 31 chr6 129634033 129634448 -19882589 - MTC LTR MaLR 0 421 1 1 1574 655 282 72 76 chr6 129634448 129634539 -19882498 - ID_B1 SINE B4 -122 102 2 1 1574 262 284 48 29 chr6 129634837 129634942 -19882095 + MLT1A1 LTR MaLR 290 396 -12 1 1574 1863 217 17 3 chr6 129635793 129636154 -19880883 + ORR1D1 LTR MaLR 1 366 -8 1 1574 1539 371 98 22 chr6 129637328 129638285 -19878752 - MTE-int LTR MaLR -24 1556 527 1 1574 1290 284 42 41 chr6 129638305 129638895 -19878142 - Lx6 LINE L1 -11 7449 6506 1 1574 1463 261 44 62 chr6 129638892 129639460 -19877577 - Lx6 LINE L1 -687 6363 5781 1 1574 405 0 0 0 chr6 129639464 129639509 -19877528 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1 1574 363 44 0 0 chr6 129639708 129639753 -19877284 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1 1574 1317 200 77 10 chr6 129640286 129640584 -19876453 - Lx3C LINE L1 -2 6974 6657 1 1574 2921 194 10 22 chr6 129640583 129641175 -19875862 - Lx6 LINE L1 -86 5791 5207 1 1574 589 244 47 8 chr6 129641724 129641852 -19875185 - ETnERV2-int LTR ERVK -204 7202 7070 1 1574 318 58 103 0 chr6 129642057 129642144 -19874893 + GA-rich Low_complexity Low_complexity 1 96 0 2 1574 577 221 5 65 chr6 129642449 129642633 -19874404 - Lx6 LINE L1 -6670 1058 886 1 1574 243 347 10 48 chr6 129642938 129643041 -19873996 + MTE-int LTR MaLR 875 973 -607 2 1574 1811 189 43 9 chr6 129643220 129643567 -19873470 + RLTR15 LTR ERVK 1 359 0 2 1574 1426 206 288 5 chr6 129643639 129644087 -19872950 - RMER15 LTR ERVL 0 575 1 2 1574 302 304 22 0 chr6 129644132 129644224 -19872813 + GA-rich Low_complexity Low_complexity 4 97 0 2 1574 3151 56 2 8 chr6 129644426 129644824 -19872213 - MTA_Mm LTR MaLR 0 396 1 2 1574 390 365 33 0 chr6 129644948 129645129 -19871908 + Lx8 LINE L1 7143 7329 -144 2 1574 339 244 0 0 chr6 129645168 129645246 -19871791 - Lx8 LINE L1 -369 7104 7027 2 1574 704 242 97 5 chr6 129645481 129645676 -19871361 - B3 SINE B2 -3 213 1 2 1574 486 288 29 29 chr6 129646540 129646715 -19870322 - B3A SINE B2 -15 183 9 2 1574 228 316 0 0 chr6 129646901 129646958 -19870079 + RSINE1 SINE B4 76 132 -33 2 1574 1083 204 27 0 chr6 129647701 129647921 -19869116 - URR1A DNA MER1_type 0 226 1 2 1574 535 297 0 24 chr6 129648395 129648536 -19868501 - B1F SINE Alu -9 140 3 2 1574 331 344 5 90 chr6 129648536 129648596 -19868441 - ID_B1 SINE B4 -9 215 32 2 1574 28 91 0 0 chr6 129649593 129649670 -19867367 + AT_rich Low_complexity Low_complexity 1 77 0 2 1574 407 309 29 14 chr6 129650033 129650171 -19866866 - RMER5 LTR ERV1 -7 527 388 2 1574 288 0 0 0 chr6 129650365 129650397 -19866640 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1574 1337 276 56 2 chr6 129650645 129651038 -19865999 - MTD LTR MaLR -1 418 5 2 1574 267 219 0 52 chr6 129651353 129651430 -19865607 + A-rich Low_complexity Low_complexity 2 74 0 2 1574 891 333 116 64 chr6 129651524 129652246 -19864791 + Lx8 LINE L1 6709 7468 -5 2 1574 838 216 88 134 chr6 129652338 129652600 -19864437 - MT2A LTR ERVL -268 265 16 2 1574 2397 157 36 124 chr6 129653674 129654254 -19862783 + RLTR24 LTR ERV1 1 529 0 2 1574 455 176 57 38 chr6 129655437 129655543 -19861494 + RLTR42-int LTR ERVK 1107 1214 -4308 2 1574 916 85 0 34 chr6 129655550 129655696 -19861341 + L1_Mus2 LINE L1 6426 6566 0 2 1574 300 225 25 12 chr6 129655868 129655949 -19861088 + RLTR42-int LTR ERVK 896 977 -5160 2 1574 4040 72 0 2 chr6 129655984 129656500 -19860537 - L1_Mus1 LINE L1 0 6567 6053 2 1574 962 257 23 0 chr6 129656501 129656715 -19860322 + RLTR14 LTR ERV1 100 318 -64 2 1574 1305 103 0 0 chr6 129656869 129657053 -19859984 + L1_Mus1 LINE L1 6384 6567 0 2 1574 1204 130 0 5 chr6 129657098 129657283 -19859754 + B2_Mm2 SINE B2 3 186 -9 2 1574 6457 63 2 2 chr6 129657305 129658139 -19858898 + L1Md_F2 LINE L1 4753 5586 -297 2 1574 7486 65 18 3 chr6 129658140 129659032 -19858005 + L1Md_F2 LINE L1 5588 6481 -101 2 1574 180 0 0 0 chr6 129659032 129659052 -19857985 + (TGGG)n Simple_repeat Simple_repeat 2 21 0 2 1574 7486 65 18 3 chr6 129659052 129659128 -19857909 + L1Md_F2 LINE L1 6482 6569 -13 2 1574 5308 142 9 26 chr6 129659128 129659636 -19857401 + Lx4A LINE L1 5010 5513 -364 2 1574 1516 37 0 0 chr6 129659636 129659825 -19857212 + L1Md_A LINE L1 6394 6582 0 2 1574 5557 187 35 22 chr6 129659825 129661320 -19855717 + Lx4A LINE L1 5514 7057 -1 2 1574 901 265 0 81 chr6 129661368 129661676 -19855361 + RLTR42-int LTR ERVK 1884 2166 -3356 2 1574 533 273 98 101 chr6 129661671 129661997 -19855040 + MYSERV6-int LTR ERVK 7173 7497 -1462 2 1574 703 126 0 43 chr6 129662294 129662410 -19854627 - BC1_Mm scRNA scRNA -41 111 1 2 1574 229 222 0 0 chr6 129662370 129662415 -19854622 - ZP3AR Satellite Satellite -130 82 38 2 1574 1568 211 100 27 chr6 129662496 129662975 -19854062 + RLTR19-int LTR ERVK 3510 3966 -2171 2 1574 324 271 0 0 chr6 129664061 129664131 -19852906 + RLTR19-int LTR ERVK 4040 4109 -2028 2 1574 674 275 47 71 chr6 129664203 129664457 -19852580 + RLTR19-int LTR ERVK 4128 4375 -1762 2 1574 2227 171 32 133 chr6 129664652 129665240 -19851797 + RLTR24 LTR ERV1 1 529 0 2 1574 247 190 35 0 chr6 129665431 129665489 -19851548 + B4A SINE B4 30 89 -203 2 1574 339 136 0 0 chr6 129665696 129665755 -19851282 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1574 32 43 0 0 chr6 129665810 129665856 -19851181 + AT_rich Low_complexity Low_complexity 1 46 0 2 1574 371 342 0 55 chr6 129666095 129666222 -19850815 + PB1D7 SINE Alu 1 120 0 2 1574 833 274 79 54 chr6 129666462 129666842 -19850195 - MTE2a LTR MaLR -13 406 13 2 1574 297 172 0 0 chr6 129667688 129667752 -19849285 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1574 468 86 0 0 chr6 129667752 129667822 -19849215 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1574 267 233 50 0 chr6 129668009 129668069 -19848968 - B1_Mur2 SINE Alu -5 144 82 2 1574 382 234 60 45 chr6 129668305 129668439 -19848598 - B1_Mur2 SINE Alu -13 136 1 2 1574 383 207 0 118 chr6 129668661 129668754 -19848283 - 7SK RNA RNA -84 247 166 2 1574 1373 180 112 22 chr6 129668754 129669066 -19847971 + Lx4B LINE L1 6719 7058 0 2 1574 367 186 164 19 chr6 129669619 129669723 -19847314 + Lx7 LINE L1 7578 7696 0 2 1574 534 67 0 0 chr6 129670047 129670122 -19846915 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1574 217 362 0 45 chr6 129671090 129671223 -19845814 + ID_B1 SINE B4 78 204 -20 2 1574 1486 253 78 34 chr6 129671464 129672221 -19844816 + RMER1A Other Other 2 471 -559 2 1574 1805 187 33 62 chr6 129672226 129672744 -19844293 - RMER3D-int LTR ERVK -415 2427 1925 2 1574 629 199 48 34 chr6 129672763 129672909 -19844128 - RMER3D-int LTR ERVK -1163 1679 1532 2 1574 1347 144 0 13 chr6 129672941 129673166 -19843871 - RMER3D-int LTR ERVK -1309 1533 1312 2 1574 200 190 70 23 chr6 129673166 129673252 -19843785 + CT-rich Low_complexity Low_complexity 1 90 0 2 1574 306 187 0 39 chr6 129673253 129673281 -19843756 - RMER3D-int LTR ERVK -5148 2096 2071 2 1574 642 26 0 0 chr6 129673281 129673357 -19843680 + (TTTCC)n Simple_repeat Simple_repeat 2 77 0 2 1574 559 98 0 6 chr6 129673357 129673443 -19843594 - RMER3D-int LTR ERVK -2281 561 489 2 1574 1532 208 53 47 chr6 129673662 129674196 -19842841 + RLTR21 LTR ERVK 748 1404 0 2 1574 286 291 23 8 chr6 129674198 129674326 -19842711 - L1MCa LINE L1 -4826 1682 1553 2 1574 696 252 0 116 chr6 129674512 129674754 -19842283 + B3 SINE B2 3 216 0 2 1574 519 324 21 42 chr6 129674943 129675161 -19841876 + MTE-int LTR MaLR 786 1086 -649 2 1574 469 265 17 0 chr6 129675391 129675508 -19841529 - RMER15 LTR ERVL -25 550 432 2 1574 243 0 0 0 chr6 129675526 129675553 -19841484 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1574 482 252 51 44 chr6 129675947 129676084 -19840953 + RSINE1 SINE B4 4 141 -24 2 1574 4530 68 17 46 chr6 129676317 129676968 -19840069 + L1Md_F2 LINE L1 5948 6579 -3 2 1574 987 196 35 0 chr6 129677468 129677667 -19839370 - URR1A DNA MER1_type 0 226 21 2 1574 466 146 143 22 chr6 129677652 129677743 -19839294 + ORR1A3 LTR MaLR 217 318 -8 2 1574 614 320 19 0 chr6 129677922 129678078 -19838959 - B3A SINE B2 -24 174 16 2 1574 232 367 25 16 chr6 129678286 129678408 -19838629 + PB1 SINE Alu 3 125 -2 2 1574 436 273 44 36 chr6 129678413 129678550 -19838487 + RSINE1 SINE B4 4 141 -24 2 1574 225 182 0 0 chr6 129679285 129679329 -19837708 - URR1B DNA MER1_type -3 222 179 2 1574 990 97 7 0 chr6 129679328 129679473 -19837564 - MTB_Mm LTR MaLR -261 146 1 2 1574 424 348 28 0 chr6 129679621 129679762 -19837275 + Lx8 LINE L1 7163 7307 -166 2 1574 309 186 0 0 chr6 129679825 129679884 -19837153 - Lx8 LINE L1 -372 7101 7043 2 1574 648 244 103 10 chr6 129680137 129680332 -19836705 - B3 SINE B2 -3 213 1 2 1574 522 276 29 29 chr6 129681204 129681379 -19835658 - B3A SINE B2 -15 183 9 2 1574 476 302 24 8 chr6 129681662 129681789 -19835248 + RSINE1 SINE B4 4 132 -33 2 1574 1065 209 27 0 chr6 129682541 129682761 -19834276 - URR1B DNA MER1_type 0 225 1 2 1574 513 271 62 10 chr6 129683234 129683366 -19833671 - B1F1 SINE Alu -9 140 3 2 1574 1065 94 0 0 chr6 129684007 129684145 -19832892 + B1_Mus1 SINE Alu 1 138 -10 2 1574 326 23 23 0 chr6 129684145 129684188 -19832849 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1574 1786 77 0 12 chr6 129684197 129684447 -19832590 + L1_Mus2 LINE L1 6317 6563 -3 2 1574 24 0 0 0 chr6 129684698 129684722 -19832315 + AT_rich Low_complexity Low_complexity 1 24 0 2 1574 1246 150 5 0 chr6 129685403 129685603 -19831434 + RMER6D LTR ERVK 1 201 -519 2 1574 1074 115 0 0 chr6 129685603 129685768 -19831269 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 2 1574 987 89 0 0 chr6 129685768 129685903 -19831134 - B1_Mus1 SINE Alu -12 136 2 2 1574 438 261 209 34 chr6 129686629 129686835 -19830202 + RMER15 LTR ERVL 307 548 -27 2 1574 257 54 71 0 chr6 129687106 129687162 -19829875 + (CAAAAA)n Simple_repeat Simple_repeat 1 60 0 2 1574 302 384 76 36 chr6 129687373 129687792 -19829245 + L1M4c LINE L1 1288 1723 -4661 2 1574 260 342 13 0 chr6 129688081 129688157 -19828880 - B4 SINE B4 -2 290 214 2 1574 558 300 167 0 chr6 129688212 129688392 -19828645 - B4 SINE B4 -74 218 9 2 1574 21 36 0 0 chr6 129688688 129688716 -19828321 + AT_rich Low_complexity Low_complexity 1 28 0 2 1574 21 57 0 0 chr6 129689904 129689939 -19827098 + AT_rich Low_complexity Low_complexity 1 35 0 2 1574 270 0 0 0 chr6 129690696 129690726 -19826311 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1574 27 29 0 0 chr6 129690789 129690823 -19826214 + AT_rich Low_complexity Low_complexity 1 34 0 2 1574 1681 234 270 0 chr6 129691437 129691933 -19825104 + MTC-int LTR MaLR 354 983 -275 2 1574 817 256 97 43 chr6 129691933 129692190 -19824847 + Lx5 LINE L1 6550 6820 -230 2 1574 1271 171 98 0 chr6 129692191 129692425 -19824612 + MTC LTR MaLR 109 365 -56 2 1574 1156 188 120 41 chr6 129693542 129693720 -19823317 - ORR1C2 LTR MaLR 0 384 175 2 1574 675 0 0 0 chr6 129693720 129693795 -19823242 + (GA)n Simple_repeat Simple_repeat 1 75 0 2 1574 1156 188 120 41 chr6 129693795 129693882 -19823155 - ORR1C2 LTR MaLR -210 174 98 2 1574 453 262 120 34 chr6 129694172 129694381 -19822656 - Lx8 LINE L1 -9 7464 7238 2 1574 667 229 0 8 chr6 129694412 129694544 -19822493 + B1_Mur4 SINE Alu 20 150 0 2 1574 450 0 0 0 chr6 129694547 129694597 -19822440 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1574 567 0 0 0 chr6 129694597 129694659 -19822378 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1574 344 318 0 0 chr6 129694686 129694793 -19822244 - L1M4c LINE L1 -4817 1567 1461 3 1574 226 267 233 0 chr6 129694822 129694908 -19822129 - B1_Mur1 SINE Alu 0 149 44 3 1574 3634 244 80 61 chr6 129695572 129696899 -19820138 + RMER1A Other Other 1 1024 -6 3 1574 551 306 58 0 chr6 129697113 129697286 -19819751 + B3A SINE B2 1 183 -15 3 1574 3346 67 0 0 chr6 129698091 129698512 -19818525 - L1Md_T LINE L1 -243 6339 5919 3 1574 1923 38 0 0 chr6 129698513 129698749 -19818288 + L1Md_A LINE L1 6347 6582 0 3 1574 295 242 86 57 chr6 129698757 129698862 -19818175 + B3 SINE B2 98 205 -11 3 1574 30 0 0 0 chr6 129698871 129698901 -19818136 + AT_rich Low_complexity Low_complexity 1 30 0 3 1574 3920 47 4 0 chr6 129699474 129699947 -19817090 + MT2C_Mm LTR ERVL 1 475 0 3 1574 3312 178 26 128 chr6 129700100 129700442 -19816595 - RMER6D LTR ERVK -6 714 368 3 1574 606 60 0 0 chr6 129700442 129700525 -19816512 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1574 3312 178 26 128 chr6 129700525 129700977 -19816060 - RMER6D LTR ERVK -353 367 1 3 1574 21 36 0 0 chr6 129701184 129701212 -19815825 + AT_rich Low_complexity Low_complexity 1 28 0 3 1574 271 218 0 19 chr6 129702605 129702708 -19814329 + (TG)n Simple_repeat Simple_repeat 1 101 0 3 1574 1170 241 235 13 chr6 129703265 129703724 -19813313 + Lx8 LINE L1 6908 7468 -5 3 1574 388 342 100 48 chr6 129703725 129703974 -19813063 - L1M2 LINE L1 -1289 4854 4593 3 1574 307 264 107 19 chr6 129703992 129704281 -19812756 + L1M3 LINE L1 5111 5442 -849 3 1574 2205 159 129 18 chr6 129704281 129704722 -19812315 + RLTR11A2 LTR ERVK 1 490 -37 3 1574 237 65 0 0 chr6 129705318 129705349 -19811688 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1574 411 73 0 0 chr6 129705351 129705406 -19811631 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1574 238 280 60 78 chr6 129705724 129705840 -19811197 - Charlie1 DNA MER1_type -2037 744 631 3 1574 562 221 29 22 chr6 129705841 129705980 -19811057 - Lx4B LINE L1 -353 6705 6566 3 1574 11715 168 19 12 chr6 129705975 129708264 -19808773 - L1_Mur2 LINE L1 -392 5485 3180 3 1574 405 228 156 12 chr6 129708277 129708487 -19808550 + Lx3C LINE L1 6742 7054 -4 3 1574 513 294 106 20 chr6 129708796 129708994 -19808043 - B3 SINE B2 0 216 2 3 1574 246 301 31 117 chr6 129709741 129709769 -19807268 + MT2B LTR ERVL 135 214 -387 3 1574 398 241 150 44 chr6 129709769 129709882 -19807155 + B1_Mur2 SINE Alu 1 125 -24 3 1574 246 301 31 117 chr6 129709882 129709903 -19807134 + MT2B LTR ERVL 215 282 -319 3 1574 1950 195 50 49 chr6 129711630 129712494 -19804543 + L1_Mur2 LINE L1 816 1696 -4181 3 1574 9350 170 21 20 chr6 129712493 129714356 -19802681 + L1_Mur2 LINE L1 3541 5406 -471 3 1574 1018 224 84 0 chr6 129714354 129714568 -19802469 + Lx5 LINE L1 6490 6721 -329 3 1574 284 223 96 0 chr6 129714578 129714672 -19802365 + Lx5 LINE L1 6947 7049 -1 3 1574 241 233 55 0 chr6 129714690 129714763 -19802274 + L1MA5 LINE L1 6195 6271 -29 3 1574 966 122 0 7 chr6 129715034 129715182 -19801855 - B1_Mus2 SINE Alu 0 147 1 3 1574 333 309 34 75 chr6 129715565 129715693 -19801344 + B1F1 SINE Alu 24 149 -1 3 1574 2018 136 88 24 chr6 129715854 129716230 -19800807 - Lx LINE L1 0 6654 6255 3 1574 525 200 0 10 chr6 129716230 129716331 -19800706 - L1VL4 LINE L1 -5802 500 401 3 1574 450 0 0 0 chr6 129716464 129716514 -19800523 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1574 353 136 15 0 chr6 129716809 129716875 -19800162 + GA-rich Low_complexity Low_complexity 3 69 0 3 1574 627 260 62 67 chr6 129717043 129717237 -19799800 + B3 SINE B2 24 216 0 3 1574 2728 197 115 36 chr6 129717277 129717608 -19799429 + RMER6D LTR ERVK 1 332 -388 3 1574 189 0 0 0 chr6 129717608 129717629 -19799408 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 1574 2728 197 115 36 chr6 129717629 129717960 -19799077 + RMER6D LTR ERVK 333 714 -6 3 1574 21 0 0 0 chr6 129718673 129718694 -19798343 + AT_rich Low_complexity Low_complexity 1 21 0 3 1574 575 290 112 16 chr6 129718821 129719063 -19797974 + RLTR16 LTR ERVK 32 296 -209 3 1574 585 100 0 0 chr6 129719312 129719402 -19797635 + (TC)n Simple_repeat Simple_repeat 1 90 0 3 1574 580 281 35 30 chr6 129720108 129720277 -19796760 + B3A SINE B2 5 174 -42 3 1574 2521 232 105 2 chr6 129720277 129720830 -19796207 + Lx5 LINE L1 6441 7050 0 3 1574 488 378 0 13 chr6 129722902 129723060 -19793977 + B3A SINE B2 10 165 -33 3 1574 210 71 0 0 chr6 129723063 129723091 -19793946 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 3 1574 401 195 61 90 chr6 129724355 129724479 -19792558 + PB1D9 SINE Alu 1 149 0 3 1574 653 227 38 138 chr6 129724719 129724959 -19792078 - B3 SINE B2 0 216 1 3 1574 515 107 0 12 chr6 129725084 129725169 -19791868 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 1574 396 0 0 0 chr6 129725706 129725750 -19791287 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1574 30475 88 1 11 chr6 129726194 129731334 -19785703 + L1Md_F2 LINE L1 498 5582 -301 3 1574 7609 69 2 0 chr6 129731339 129732322 -19784715 + L1Md_F2 LINE L1 5588 6572 -10 3 1574 658 283 55 15 chr6 129733428 129733629 -19783408 - Lx5 LINE L1 -5 7045 6837 3 1574 192 231 47 82 chr6 129734357 129734442 -19782595 + L4 LINE RTE 1628 1709 -320 3 1574 557 273 90 12 chr6 129735170 129735362 -19781675 - B3A SINE B2 -14 202 1 3 1574 29 0 0 0 chr6 129735450 129735479 -19781558 + AT_rich Low_complexity Low_complexity 1 29 0 3 1574 264 286 0 0 chr6 129735796 129735936 -19781101 + (CA)n Simple_repeat Simple_repeat 2 141 0 3 1574 800 316 17 89 chr6 129736743 129737090 -19779947 + MTEb LTR MaLR 58 379 0 3 1574 30738 74 17 13 chr6 129737294 129741415 -19775622 - L1Md_F2 LINE L1 -2 6580 2390 3 1574 218 273 88 29 chr6 129741415 129741483 -19775554 - B2_Mm1t SINE B2 -112 81 10 3 1574 30738 74 17 13 chr6 129741483 129742648 -19774389 - L1Md_F2 LINE L1 -2 2389 1203 3 1574 6271 59 4 2 chr6 129742614 129743451 -19773586 - L1Md_F LINE L1 -5380 1139 302 3 1574 516 32 0 0 chr6 129743490 129743552 -19773485 + (TCC)n Simple_repeat Simple_repeat 2 63 0 3 1574 243 0 0 0 chr6 129743562 129743589 -19773448 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 3 1574 487 306 27 0 chr6 129744210 129744357 -19772680 + B3 SINE B2 63 213 -3 3 1574 520 273 0 8 chr6 129744745 129744867 -19772170 + B1_Mur2 SINE Alu 21 141 -8 3 1574 2949 212 3 3 chr6 129744906 129745487 -19771550 - Lx LINE L1 -8 6646 6066 3 1574 1059 161 11 32 chr6 129745489 129745675 -19771362 + RMER6D LTR ERVK 534 715 -5 3 1574 577 335 29 30 chr6 129746539 129746819 -19770218 + RLTR16 LTR ERVK 30 358 -334 3 1574 594 273 0 8 chr6 129748069 129748198 -19768839 + B3A SINE B2 2 129 -69 3 1574 2842 222 57 2 chr6 129748198 129748811 -19768226 + Lx5 LINE L1 6398 7044 -6 3 1574 660 148 31 0 chr6 129748863 129748991 -19768046 + Lx LINE L1 6518 6649 -5 3 1574 341 84 95 40 chr6 129749132 129749181 -19767856 + B2_Mm2 SINE B2 112 158 -37 3 1574 306 0 0 0 chr6 129749181 129749215 -19767822 + (CATA)n Simple_repeat Simple_repeat 2 35 0 3 1574 341 84 95 40 chr6 129749215 129749239 -19767798 + B2_Mm2 SINE B2 159 189 -6 3 1574 998 189 109 0 chr6 129749242 129749480 -19767557 + Lx2 LINE L1 6730 6993 -4 3 1574 7158 107 7 3 chr6 129750094 129751224 -19765813 + L1_Mur1 LINE L1 4363 5497 -389 3 1574 1125 150 54 9 chr6 129751225 129751447 -19765590 + Lx3_Mus LINE L1 6777 7008 -1 3 1574 469 314 62 63 chr6 129751453 129751630 -19765407 + B3A SINE B2 36 212 -4 3 1574 270 0 0 0 chr6 129753340 129753370 -19763667 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1574 255 103 0 0 chr6 129753386 129753425 -19763612 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1574 333 256 24 79 chr6 129753680 129753807 -19763230 + PB1D9 SINE Alu 1 120 0 3 1574 2339 105 239 26 chr6 129753912 129754364 -19762673 - RLTR6_Mm LTR ERV1 -70 584 37 3 1574 235 218 196 56 chr6 129754366 129754473 -19762564 - RLTR6_Mm LTR ERV1 -532 122 1 3 196 60982 17 13 1 chr6 129754473 129762083 -19754954 - RLTR6-int LTR ERV1 0 7778 1 3 1575 2454 104 228 27 chr6 129762083 129762557 -19754480 - RLTR6_Mm LTR ERV1 -49 605 37 3 1575 235 218 196 56 chr6 129762559 129762666 -19754371 - RLTR6_Mm LTR ERV1 -532 122 1 3 1575 189 0 0 0 chr6 129762805 129762826 -19754211 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3 1575 727 230 35 127 chr6 129762826 129763055 -19753982 - B3 SINE B2 -8 208 1 3 1575 356 111 0 16 chr6 129763170 129763234 -19753803 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 1575 261 0 0 0 chr6 129763757 129763786 -19753251 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1575 558 0 0 0 chr6 129763786 129763847 -19753190 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1575 31 26 0 0 chr6 129764704 129764742 -19752295 + AT_rich Low_complexity Low_complexity 1 38 0 3 1575 531 297 71 66 chr6 129766438 129766636 -19750401 - B3A SINE B2 -15 201 3 3 1575 351 250 0 0 chr6 129767075 129767207 -19749830 + (CA)n Simple_repeat Simple_repeat 2 133 0 3 1575 792 311 68 12 chr6 129768029 129768280 -19748757 + MTEa LTR MaLR 52 316 -63 3 1575 180 97 0 0 chr6 129768574 129768605 -19748432 + (CAT)n Simple_repeat Simple_repeat 2 32 0 3 1575 297 0 0 0 chr6 129768605 129768638 -19748399 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1575 288 0 0 0 chr6 129768638 129768669 -19748368 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 1575 562 302 27 0 chr6 129769283 129769432 -19747605 + B3 SINE B2 63 215 -1 3 1575 735 236 0 0 chr6 129769811 129769951 -19747086 + B1_Mur2 SINE Alu 2 141 -8 3 1575 5774 169 10 2 chr6 129769990 129771048 -19745989 - Lx LINE L1 -1 6653 5587 3 1575 4399 175 22 0 chr6 129771048 129771869 -19745168 + Lx LINE L1 4743 5581 -302 3 1575 333 284 81 0 chr6 129772103 129772251 -19744786 + Charlie5 DNA MER1_type 2364 2523 -101 3 1575 981 187 113 0 chr6 129772724 129772927 -19744110 + URR1A DNA MER1_type 1 226 0 4 1575 1424 220 1 18 chr6 129773019 129773441 -19743596 - Lx4B LINE L1 -54 6922 6488 4 1575 2374 140 71 2 chr6 129773432 129773869 -19743168 + L1_Mur2 LINE L1 4435 4901 -976 4 1575 1784 185 39 30 chr6 129774474 129774837 -19742200 - ORR1D1 LTR MaLR -8 366 1 4 1575 862 230 78 6 chr6 129774837 129775014 -19742023 + B3 SINE B2 21 210 -6 4 1575 21 0 0 0 chr6 129775014 129775035 -19742002 + AT_rich Low_complexity Low_complexity 1 21 0 4 1575 301 216 11 11 chr6 129775383 129775472 -19741565 + GA-rich Low_complexity Low_complexity 4 92 0 4 1575 2598 186 60 17 chr6 129776056 129776593 -19740444 + Lx5 LINE L1 6327 6886 -164 4 1575 28 29 0 0 chr6 129777277 129777312 -19739725 + AT_rich Low_complexity Low_complexity 1 35 0 4 1575 181 0 0 65 chr6 129777429 129777460 -19739577 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1575 326 237 13 0 chr6 129777466 129777542 -19739495 - RMER15 LTR ERVL -113 462 386 4 1575 216 0 0 0 chr6 129777841 129777865 -19739172 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1575 874 268 42 34 chr6 129777982 129778316 -19738721 + ORR1D2 LTR MaLR 4 353 -6 4 1575 361 240 14 171 chr6 129778325 129778541 -19738496 + L1_Mur3 LINE L1 2244 2425 -3455 4 1575 611 266 12 0 chr6 129778615 129778788 -19738249 - L1_Mur3 LINE L1 -2542 3338 3164 4 1575 313 327 38 9 chr6 129779178 129779283 -19737754 + B1F1 SINE Alu 1 108 -41 4 1575 453 36 0 0 chr6 129779283 129779338 -19737699 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1575 460 240 78 29 chr6 129779441 129779511 -19737526 + B1_Mus2 SINE Alu 19 88 -59 4 1575 360 0 0 0 chr6 129779511 129779551 -19737486 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1575 5820 89 7 9 chr6 129779551 129780358 -19736679 - RLTR13C2 LTR ERVK -2 806 1 4 1575 612 62 0 0 chr6 129780358 129780439 -19736598 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 1575 460 240 78 29 chr6 129780439 129780469 -19736568 + B1_Mus2 SINE Alu 89 124 -23 4 1575 223 289 0 0 chr6 129782221 129782273 -19734764 + PB1D10 SINE Alu 46 97 -20 4 1575 362 350 57 0 chr6 129782464 129782604 -19734433 + ID_B1 SINE B4 63 210 -14 4 1575 183 80 0 0 chr6 129783906 129783931 -19733106 + (CCAA)n Simple_repeat Simple_repeat 3 27 0 4 1575 3687 181 36 0 chr6 129784460 129785210 -19731827 + Lx3C LINE L1 6166 7050 -8 4 1575 311 361 74 0 chr6 129785410 129785518 -19731519 + RSINE1 SINE B4 40 155 -10 4 1575 221 380 53 0 chr6 129786001 129786114 -19730923 + B1F SINE Alu 21 139 -10 4 1575 391 280 36 27 chr6 129787614 129787725 -19729312 + PB1D10 SINE Alu 1 117 0 4 1575 38 0 0 0 chr6 129787725 129787763 -19729274 + AT_rich Low_complexity Low_complexity 1 38 0 4 1575 215 175 35 119 chr6 129788078 129788221 -19728816 + T-rich Low_complexity Low_complexity 2 132 0 4 1575 675 0 0 0 chr6 129788381 129788456 -19728581 + (TTTC)n Simple_repeat Simple_repeat 1 75 0 4 1575 1262 33 0 0 chr6 129788456 129788609 -19728428 - B2_Mm1a SINE B2 -39 154 2 4 1575 1073 305 113 21 chr6 129788609 129789363 -19727674 + Lx8 LINE L1 6242 7064 -409 4 1575 245 315 22 0 chr6 129789409 129789498 -19727539 + Lx8 LINE L1 7193 7283 -190 4 1575 7438 152 19 4 chr6 129789499 129790851 -19726186 + Lx2 LINE L1 5625 6996 -1 4 1575 5876 165 42 18 chr6 129790865 129792007 -19725030 + Lx2 LINE L1 5827 6996 -1 4 1575 381 70 0 0 chr6 129792008 129792065 -19724972 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 4 1575 246 351 39 0 chr6 129792348 129792425 -19724612 + PB1D10 SINE Alu 17 96 -21 4 1575 183 80 0 0 chr6 129792758 129792783 -19724254 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1575 2539 179 44 15 chr6 129792903 129793426 -19723611 + MusHAL1 LINE L1 4 541 -2813 4 1575 7898 173 108 40 chr6 129793427 129795369 -19721668 + L1_Mur2 LINE L1 3085 5160 -717 4 1575 417 20 0 0 chr6 129795369 129795419 -19721618 + (CAA)n Simple_repeat Simple_repeat 2 51 0 4 1575 1906 113 40 19 chr6 129796033 129796357 -19720680 + IAPEY_LTR LTR ERVK 55 385 0 4 1575 2790 85 28 5 chr6 129796817 129797208 -19719829 + L1Md_F2 LINE L1 6169 6568 -14 4 1575 38 0 0 0 chr6 129797219 129797257 -19719780 + AT_rich Low_complexity Low_complexity 1 38 0 4 1575 7800 55 6 1 chr6 129797574 129798547 -19718490 + RLTR13A3 LTR ERVK 1 978 0 4 1575 990 158 5 11 chr6 129798549 129798734 -19718303 + MMTV-int LTR ERVK 3 186 -5622 4 1575 5410 326 44 36 chr6 129799370 129803657 -19713380 + MMTV-int LTR ERVK 1033 5278 -1975 4 1575 425 249 62 67 chr6 129803633 129803857 -19713180 + MMTV-int LTR ERVK 5447 5669 -1575 4 1575 321 247 20 10 chr6 129803862 129803960 -19713077 + MMTV-int LTR ERVK 5519 5617 -1636 4 1575 6612 73 13 13 chr6 129804626 129805579 -19711458 + ETnERV3-int LTR ERVK 4856 5808 0 4 1575 7862 50 6 1 chr6 129805584 129806557 -19710480 + RLTR13A3 LTR ERVK 1 978 0 4 1575 234 0 0 0 chr6 129806600 129806626 -19710411 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1575 33748 36 1 0 chr6 129806809 129812872 -19704165 + L1Md_T LINE L1 1 5589 -297 4 1575 8973 7 0 3 chr6 129812872 129813871 -19703166 + L1Md_T LINE L1 5590 6585 0 4 1575 528 309 14 28 chr6 129813889 129814102 -19702935 + Lx8 LINE L1 6237 6446 -1027 4 1575 1278 181 48 48 chr6 129814102 129814392 -19702645 + RLTR15 LTR ERVK 38 327 -32 4 1575 1099 290 41 34 chr6 129814572 129815011 -19702026 + Lx8 LINE L1 6625 7066 -407 4 1575 244 288 27 0 chr6 129815154 129815227 -19701810 + Lx8 LINE L1 7233 7307 -166 4 1575 23 33 0 0 chr6 129815314 129815344 -19701693 + AT_rich Low_complexity Low_complexity 1 30 0 4 1575 350 226 0 0 chr6 129816037 129816099 -19700938 - PB1D10 SINE Alu -3 114 53 4 1575 406 108 0 13 chr6 129816108 129816183 -19700854 - L1_Mur2 LINE L1 -4441 1436 1363 4 1575 6360 192 23 11 chr6 129816178 129817900 -19699137 + Lx4A LINE L1 5297 7055 -3 4 1575 411 21 0 0 chr6 129817900 129817948 -19699089 + (CTA)n Simple_repeat Simple_repeat 3 50 0 4 1575 305 329 7 13 chr6 129818973 129819127 -19697910 + L1M2 LINE L1 5677 5829 -483 4 1575 476 351 0 0 chr6 129819127 129819258 -19697779 + B1F1 SINE Alu 1 131 -18 4 1575 374 287 140 24 chr6 129819331 129819745 -19697292 + L1MA10 LINE L1 5844 6305 -29 4 1575 678 62 0 0 chr6 129820409 129820505 -19696532 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 1575 2169 145 0 5 chr6 129820590 129820964 -19696073 - L1_Mm LINE L1 -692 5191 4820 4 1575 6059 88 0 25 chr6 129820963 129821862 -19695175 + L1_Mus2 LINE L1 5690 6566 0 4 1575 26 0 0 0 chr6 129822530 129822556 -19694481 + AT_rich Low_complexity Low_complexity 1 26 0 4 1575 198 0 0 0 chr6 129824507 129824529 -19692508 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1575 485 232 54 24 chr6 129825557 129825725 -19691312 + Lx9 LINE L1 5809 5981 -1663 4 1575 3611 169 49 13 chr6 129827127 129827244 -19689793 - Lx2 LINE L1 -2 6995 6883 4 1575 1981 95 0 82 chr6 129827244 129827575 -19689462 - L1Md_F2 LINE L1 -13 6569 6266 4 1575 3611 169 49 13 chr6 129827575 129828208 -19688829 - Lx2 LINE L1 -115 6882 6220 4 1575 210 323 15 15 chr6 129828242 129828308 -19688729 - ID4_ SINE ID -2 81 16 4 1575 794 273 133 8 chr6 129828893 129829148 -19687889 + RMER5 LTR ERV1 13 299 -235 4 1575 352 127 0 0 chr6 129829148 129829203 -19687834 - L1_Mm LINE L1 -472 5411 5357 4 1575 5095 57 30 6 chr6 129829214 129829888 -19687149 - L1Md_F3 LINE L1 -14 6570 5881 4 1575 4371 193 16 63 chr6 129829888 129830674 -19686363 + Lx2 LINE L1 5771 6507 -490 4 1575 6045 81 6 23 chr6 129830674 129831496 -19685541 + RLTR13C2 LTR ERVK 1 808 0 4 1575 4371 193 16 63 chr6 129831496 129831802 -19685235 + Lx2 LINE L1 6508 6812 -185 4 1575 422 150 70 0 chr6 129831799 129831899 -19685138 + L1_Mus4 LINE L1 6526 6632 -4 4 1575 456 178 280 0 chr6 129831899 129832017 -19685020 + RMER5 LTR ERV1 379 529 -5 4 1575 214 195 0 0 chr6 129832180 129832221 -19684816 + (TAA)n Simple_repeat Simple_repeat 3 43 0 4 1575 396 0 0 0 chr6 129832370 129832414 -19684623 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1575 351 105 0 0 chr6 129832476 129832533 -19684504 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1575 375 113 0 0 chr6 129832595 129832657 -19684380 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1575 332 317 64 76 chr6 129833033 129833047 -19683990 - RSINE1 SINE B4 0 165 156 4 1575 596 14 14 0 chr6 129833047 129833120 -19683917 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 1575 332 317 64 76 chr6 129833120 129833262 -19683775 - RSINE1 SINE B4 -10 155 11 4 1575 393 299 73 0 chr6 129833933 129834070 -19682967 - B1_Mur1 SINE Alu -2 147 1 4 1575 9775 123 37 11 chr6 129834091 129836603 -19680434 + L1VL2 LINE L1 95 2683 -932 4 1575 3602 134 9 27 chr6 129836604 129837244 -19679793 - RLTR13C1 LTR ERVK 0 983 415 4 1575 865 262 135 4 chr6 129837235 129837495 -19679542 - RMER5 LTR ERV1 -228 306 13 4 1575 7134 177 18 12 chr6 129837879 129840176 -19676861 + Lx LINE L1 4333 6647 -7 4 1575 504 0 0 0 chr6 129840412 129840468 -19676569 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1575 657 25 0 0 chr6 129840468 129840546 -19676491 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1575 437 0 19 0 chr6 129840554 129840607 -19676430 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 4 1575 6629 138 10 6 chr6 129841225 129842856 -19674181 - L1_Mus3 LINE L1 -7 6631 4993 4 1575 1328 173 0 0 chr6 129842844 129843093 -19673944 + L1_Mm LINE L1 3903 4151 -1732 4 1575 545 196 0 0 chr6 129843214 129843316 -19673721 - Lx4A LINE L1 -778 6280 6179 4 1575 5165 235 28 38 chr6 129843524 129843620 -19673417 - Lx5 LINE L1 -38 7012 6919 4 1575 4982 176 29 20 chr6 129843620 129844603 -19672434 + Lx2 LINE L1 6006 6996 -1 4 1575 5165 235 28 38 chr6 129844603 129844746 -19672291 - Lx5 LINE L1 -132 6918 6798 4 1575 4183 177 105 9 chr6 129844746 129845620 -19671417 - RMER17B LTR ERVK 0 958 1 4 1575 5165 235 28 38 chr6 129845620 129846793 -19670244 - Lx5 LINE L1 -253 6797 5613 4 1575 1343 203 30 13 chr6 129846790 129846905 -19670132 - Lx2A1 LINE L1 -859 6149 6039 4 1575 486 0 0 0 chr6 129846905 129846959 -19670078 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 4 1575 1343 214 32 12 chr6 129846959 129847174 -19669863 - Lx2A1 LINE L1 -970 6038 5812 4 1575 530 260 47 0 chr6 129847506 129847633 -19669404 - ETnERV2-int LTR ERVK -204 7202 7070 4 1575 1641 125 4 7 chr6 129847634 129847955 -19669082 - Lx2A1 LINE L1 -35 5848 5529 4 1575 445 79 16 0 chr6 129847960 129848023 -19669014 + U6 snRNA snRNA 9 72 -35 4 1575 477 215 73 16 chr6 129848104 129848227 -19668810 + B1_Mus2 SINE Alu 17 146 -1 4 1575 21 0 0 0 chr6 129848756 129848777 -19668260 + AT_rich Low_complexity Low_complexity 1 21 0 4 1575 256 163 0 0 chr6 129848928 129848971 -19668066 + B1_Mus1 SINE Alu 2 44 -104 4 1575 338 376 14 7 chr6 129850311 129850453 -19666584 + ID_B1 SINE B4 82 224 0 5 1575 639 26 0 0 chr6 129850823 129850900 -19666137 + (TC)n Simple_repeat Simple_repeat 2 78 0 5 1575 519 56 0 0 chr6 129850900 129850970 -19666067 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1575 21 71 0 0 chr6 129851139 129851181 -19665856 + AT_rich Low_complexity Low_complexity 1 42 0 5 1575 1269 308 108 28 chr6 129851203 129851534 -19665503 + Lx8 LINE L1 6240 6578 -895 5 1575 5144 65 3 0 chr6 129851534 129852185 -19664852 + L1Md_F2 LINE L1 5930 6582 0 5 1575 1269 308 108 28 chr6 129852185 129852610 -19664427 + Lx8 LINE L1 6579 7056 -417 5 1575 258 344 32 8 chr6 129852643 129852769 -19664268 + Lx8 LINE L1 7187 7315 -158 5 1575 1450 41 6 0 chr6 129853116 129853288 -19663749 + B2_Mm1t SINE B2 2 174 -19 5 1575 251 188 29 0 chr6 129853965 129854034 -19663003 - L1_Mur2 LINE L1 -4442 1435 1365 5 1575 5974 212 39 4 chr6 129854031 129855721 -19661316 + Lx4A LINE L1 5297 7055 -3 5 1575 238 246 0 0 chr6 129855721 129855786 -19661251 + (CTA)n Simple_repeat Simple_repeat 1 65 0 5 1575 189 0 0 0 chr6 129855793 129855814 -19661223 + (TAA)n Simple_repeat Simple_repeat 1 21 0 5 1575 227 267 112 34 chr6 129856400 129856489 -19660548 - Charlie1b DNA MER1_type -368 155 60 5 1575 23 54 0 0 chr6 129856818 129856855 -19660182 + AT_rich Low_complexity Low_complexity 1 37 0 5 1575 213 306 14 0 chr6 129857149 129857221 -19659816 + B1F SINE Alu 66 138 -11 5 1575 22 35 0 0 chr6 129857339 129857368 -19659669 + AT_rich Low_complexity Low_complexity 1 29 0 5 1575 230 261 60 47 chr6 129857537 129857686 -19659351 + L1MA10 LINE L1 6142 6292 -42 5 1575 241 257 43 68 chr6 129857779 129857896 -19659141 - ID_B1 SINE B4 -6 218 105 5 1575 30 97 0 0 chr6 129861895 129861988 -19655049 + AT_rich Low_complexity Low_complexity 1 93 0 5 1575 321 262 36 42 chr6 129862185 129862352 -19654685 + Lx9 LINE L1 5862 6027 -1617 5 1575 246 390 0 0 chr6 129863719 129863796 -19653241 - ID4_ SINE ID -2 81 5 5 1575 257 91 44 29 chr6 129863802 129863870 -19653167 + T-rich Low_complexity Low_complexity 3 71 0 5 1575 294 360 0 0 chr6 129863883 129863972 -19653065 - PB1D10 SINE Alu -23 94 6 5 1575 450 0 0 0 chr6 129864010 129864060 -19652977 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1575 1554 226 163 9 chr6 129864387 129864846 -19652191 + RMER5 LTR ERV1 1 530 -4 5 1575 259 232 14 14 chr6 129864990 129865060 -19651977 + (TAA)n Simple_repeat Simple_repeat 3 72 0 5 1575 324 64 0 0 chr6 129865302 129865349 -19651688 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1575 446 287 13 101 chr6 129865365 129865524 -19651513 - RSINE1 SINE B4 -10 155 11 5 1575 375 89 0 0 chr6 129865692 129865748 -19651289 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1575 399 239 8 71 chr6 129866143 129866269 -19650768 - PB1D9 SINE Alu 0 120 3 5 1575 516 59 0 0 chr6 129867362 129867430 -19649607 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 1575 2668 70 0 0 chr6 129868201 129868529 -19648508 - IAPEY3_LTR LTR ERVK -4 328 1 5 1575 28998 51 26 1 chr6 129868529 129872554 -19644483 - IAPEY3-int LTR ERVK 0 7680 3556 5 1575 8114 121 15 10 chr6 129872546 129873844 -19643193 - IAPEY3-int LTR ERVK -6375 1305 1 5 1575 2685 72 0 0 chr6 129873844 129874175 -19642862 - IAPEY3_LTR LTR ERVK 0 332 2 5 1575 315 393 14 7 chr6 129874698 129874844 -19642193 + MT2A LTR ERVL 282 428 -105 5 1575 440 245 0 0 chr6 129875010 129875108 -19641929 - Lx4A LINE L1 -776 6282 6185 5 1575 6071 144 17 1 chr6 129875172 129876560 -19640477 + L1_Mus3 LINE L1 5218 6629 -9 5 1575 312 282 0 0 chr6 129876577 129876655 -19640382 + B1F1 SINE Alu 67 144 -5 5 1575 2532 52 18 3 chr6 129877149 129877477 -19639560 - MTA_Mm LTR MaLR 0 396 64 5 1575 2936 43 0 0 chr6 129877477 129877823 -19639214 - ORR1A0 LTR MaLR 0 346 1 5 1575 11207 77 5 5 chr6 129877828 129879422 -19637615 - ORR1A0-int LTR MaLR -14 1778 186 5 1575 794 216 222 59 chr6 129879517 129879787 -19637250 + RLTR5_Mm LTR ERV1 276 628 0 5 1575 18367 235 17 21 chr6 129879788 129884701 -19632336 + MURVY-int LTR ERV1 7 4898 -2554 5 1575 5109 171 34 11 chr6 129884697 129885680 -19631357 + MURVY-int LTR ERV1 5022 6026 -1426 5 1575 3001 21 0 0 chr6 129885681 129886018 -19631019 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 196 41847 16 11 4 chr6 129886018 129892419 -19624618 - IAPEz-int LTR ERVK 0 6481 8 5 1576 3001 21 0 0 chr6 129892419 129892756 -19624281 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1576 5539 224 18 35 chr6 129892757 129894212 -19622825 + MURVY-int LTR ERV1 6023 7452 0 5 1576 771 224 66 54 chr6 129894379 129894620 -19622417 + RLTR5_Mm LTR ERV1 385 628 0 5 1576 1747 47 4 8 chr6 129894620 129894846 -19622191 - ORR1A0-int LTR MaLR -1567 225 1 5 1576 2830 61 0 0 chr6 129894846 129895192 -19621845 - ORR1A0 LTR MaLR 0 346 1 5 1576 539 28 14 14 chr6 129895192 129895259 -19621778 - MTA_Mm LTR MaLR -328 68 1 5 1576 1639 166 219 5 chr6 129895464 129895834 -19621203 + RLTR44B LTR ERVK 1 449 0 5 1576 266 305 10 31 chr6 129895917 129896015 -19621022 - MLT1A1 LTR MaLR -8 400 305 5 1576 564 132 15 8 chr6 129896053 129896183 -19620854 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 5 1576 330 309 81 23 chr6 129896189 129896476 -19620561 + L1ME1 LINE L1 5657 5955 -209 5 1576 3087 22 76 0 chr6 129896620 129896988 -19620049 + MTA_Mm LTR MaLR 1 396 0 5 1576 9363 26 0 4 chr6 129896988 129898090 -19618947 + MTA_Mm-int LTR MaLR 1 1098 0 5 1576 2564 25 6 0 chr6 129898090 129898405 -19618632 + MTA_Mm LTR MaLR 1 317 -79 5 1576 547 234 8 0 chr6 129898407 129898535 -19618502 - MTC LTR MaLR -292 129 1 5 1576 277 268 56 0 chr6 129898936 129899007 -19618030 - B1F SINE Alu -11 138 64 5 1576 182 219 0 15 chr6 129899896 129899961 -19617076 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1576 237 385 46 0 chr6 129900766 129900896 -19616141 + ID_B1 SINE B4 85 220 -4 5 1576 2172 77 30 20 chr6 129900997 129901301 -19615736 - IAPLTR2b LTR ERVK -20 307 1 5 1576 1758 185 30 10 chr6 129902576 129902980 -19614057 - L1_Mur1 LINE L1 -1040 4846 4435 5 1576 494 241 12 37 chr6 129902979 129903143 -19613894 + Lx3C LINE L1 6026 6185 -791 5 1576 11628 77 2 3 chr6 129903143 129905451 -19611586 - L1Md_F2 LINE L1 -3 6579 4276 5 1576 2587 142 102 0 chr6 129905452 129905923 -19611114 - L1Md_F LINE L1 -5691 828 310 5 1576 3677 209 15 20 chr6 129905955 129906757 -19610280 + Lx3C LINE L1 6172 6969 -7 5 1576 252 0 0 0 chr6 129906765 129906793 -19610244 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 5 1576 256 182 21 83 chr6 129907127 129907223 -19609814 + T-rich Low_complexity Low_complexity 3 92 0 5 1576 4203 182 16 6 chr6 129907255 129908104 -19608933 + Lx2 LINE L1 5881 6738 -259 5 1576 3538 153 76 11 chr6 129908105 129908739 -19608298 + Lx2 LINE L1 6323 6997 0 5 1576 612 222 79 0 chr6 129908874 129909000 -19608037 + B1_Mur4 SINE Alu 9 144 -6 5 1576 790 306 68 54 chr6 129909081 129909578 -19607459 + Lx8 LINE L1 6310 6813 -660 5 1576 321 253 61 2 chr6 129909580 129909698 -19607339 - ORR1A4 LTR MaLR -3 326 202 5 1576 1255 211 14 89 chr6 129909738 129910030 -19607007 - ORR1A4 LTR MaLR -59 270 1 5 1576 7272 186 52 105 chr6 129910030 129911968 -19605069 - ORR1A4-int LTR MaLR 0 1963 129 5 1576 5546 161 25 11 chr6 129911971 129913117 -19603920 + Lx LINE L1 5492 6654 0 5 1576 21 0 0 0 chr6 129913119 129913140 -19603897 + AT_rich Low_complexity Low_complexity 1 21 0 5 1576 484 228 26 0 chr6 129913159 129913273 -19603764 - ORR1A4-int LTR MaLR -1846 117 1 5 1576 1243 218 30 62 chr6 129913273 129913610 -19603427 - ORR1A4 LTR MaLR 0 326 1 5 1576 760 306 77 47 chr6 129913626 129914093 -19602944 + Lx8 LINE L1 6835 7315 -158 5 1576 266 320 67 67 chr6 129914753 129914917 -19602120 - RMER13A LTR ERVK -526 334 171 5 1576 724 184 40 6 chr6 129914919 129915094 -19601943 - L1_Mur2 LINE L1 -2400 3477 3297 5 1576 2823 168 181 36 chr6 129915093 129915848 -19601189 + L1_Mur1 LINE L1 48 912 -6070 5 1576 6984 168 131 6 chr6 129915846 129916897 -19600140 - L1_Mur2 LINE L1 -2581 3296 2053 5 1576 351 0 0 0 chr6 129916897 129916936 -19600101 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1576 6984 168 131 6 chr6 129916936 129917712 -19599325 - L1_Mur2 LINE L1 -3825 2052 1241 5 1576 626 267 13 88 chr6 129917749 129917975 -19599062 - L1_Mur2 LINE L1 -6229 857 649 5 1576 10199 142 31 11 chr6 129918031 129920751 -19596286 + L1VL4 LINE L1 56 2830 -729 5 1576 842 54 0 9 chr6 129920757 129920870 -19596167 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 5 1576 5734 53 1 1 chr6 129920886 129921603 -19595434 - L1Md_F2 LINE L1 -14 6568 5852 5 1576 282 125 0 0 chr6 129921603 129921651 -19595386 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 5 1576 712 289 179 13 chr6 129921659 129921961 -19595076 + MTD LTR MaLR 13 364 -55 5 1576 822 86 0 0 chr6 129921973 129922089 -19594948 + (GAAA)n Simple_repeat Simple_repeat 3 118 0 5 1576 378 0 0 0 chr6 129922705 129922747 -19594290 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1576 241 239 0 0 chr6 129923146 129923192 -19593845 + PB1D10 SINE Alu 46 91 -26 5 1576 22 35 0 0 chr6 129923201 129923230 -19593807 + AT_rich Low_complexity Low_complexity 1 29 0 5 1576 374 375 26 0 chr6 129923379 129923531 -19593506 + ID_B1 SINE B4 63 218 -6 5 1576 636 26 0 0 chr6 129923614 129923692 -19593345 + L1Md_F3 LINE L1 5705 5782 -802 5 1576 2874 219 21 15 chr6 129924282 129924948 -19592089 + Lx LINE L1 5979 6648 -6 5 1576 21 36 0 0 chr6 129926979 129927007 -19590030 + AT_rich Low_complexity Low_complexity 1 28 0 5 1576 1856 188 59 10 chr6 129927007 129927416 -19589621 + Lx3B LINE L1 6541 6969 -4 5 1576 318 50 0 0 chr6 129927429 129927469 -19589568 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 5 1576 321 89 0 0 chr6 129927568 129927613 -19589424 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 5 1576 963 349 45 25 chr6 129927668 129928180 -19588857 + Lx8 LINE L1 6271 6792 -681 5 1576 540 91 0 0 chr6 129930656 129930744 -19586293 + (TC)n Simple_repeat Simple_repeat 1 88 0 5 1576 3020 178 11 17 chr6 129930744 129931458 -19585579 - L1_Mur2 LINE L1 -3803 2074 1365 5 1576 1475 179 29 0 chr6 129931456 129931769 -19585268 + L1_Mur2 LINE L1 5298 5619 -258 5 1576 9900 5 0 3 chr6 129932358 129933525 -19583512 + L1Md_A LINE L1 4423 5586 -297 5 1576 9027 4 0 0 chr6 129933525 129934521 -19582516 + L1Md_A LINE L1 5587 6582 0 5 1576 339 262 53 77 chr6 129934850 129934991 -19582046 + L1MB1 LINE L1 5685 5819 -370 5 1576 346 297 0 94 chr6 129934991 129935151 -19581886 + B1F SINE Alu 1 145 -4 5 1576 339 262 53 77 chr6 129935151 129935294 -19581743 + L1MB1 LINE L1 5820 5962 -227 5 1576 438 79 0 0 chr6 129935689 129935752 -19581285 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1576 844 146 0 0 chr6 129935754 129935891 -19581146 - B1_Mus1 SINE Alu -6 142 6 5 1576 416 329 0 26 chr6 129935891 129935910 -19581127 - ID_B1 SINE B4 -6 218 67 5 1576 243 0 0 0 chr6 129936490 129936517 -19580520 + (TC)n Simple_repeat Simple_repeat 1 27 0 5 1576 732 121 0 0 chr6 129936517 129936648 -19580389 + (CA)n Simple_repeat Simple_repeat 1 132 0 5 1576 850 111 14 29 chr6 129939286 129939412 -19577625 + B1_Mus1 SINE Alu 9 135 -13 5 1576 284 0 98 0 chr6 129939412 129939463 -19577574 + (CAAAC)n Simple_repeat Simple_repeat 5 60 0 5 1576 850 111 14 29 chr6 129939463 129939475 -19577562 + B1_Mus1 SINE Alu 136 145 -3 5 1576 596 174 8 1 chr6 129939540 129939648 -19577389 - B1_Mus1 SINE Alu -7 113 1 5 1576 347 235 64 80 chr6 129939648 129939681 -19577356 - MT2B LTR ERVL -447 154 124 5 1576 14404 28 2 0 chr6 129939729 129942198 -19574839 - L1Md_A LINE L1 -1 6581 4109 6 1576 282 160 0 0 chr6 129942281 129942331 -19574706 + (TAA)n Simple_repeat Simple_repeat 2 51 0 6 1576 438 69 0 0 chr6 129942365 129942423 -19574614 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 6 1576 38 22 0 0 chr6 129942678 129942723 -19574314 + AT_rich Low_complexity Low_complexity 1 45 0 6 1576 816 110 110 0 chr6 129943323 129943450 -19573587 + B1_Mus2 SINE Alu 1 141 -6 6 1576 623 279 21 10 chr6 129943676 129943868 -19573169 + Lx9 LINE L1 5830 6023 -1621 6 1576 339 309 86 29 chr6 129944259 129944399 -19572638 - RSINE1 SINE B4 -10 155 8 6 1576 226 282 0 93 chr6 129945419 129945505 -19571532 - PB1D10 SINE Alu 0 117 40 6 1576 1198 245 124 15 chr6 129945713 129946148 -19570889 + RMER5 LTR ERV1 13 530 -4 6 1576 231 227 0 0 chr6 129946305 129946371 -19570666 + (TAA)n Simple_repeat Simple_repeat 1 66 0 6 1576 602 216 8 46 chr6 129947066 129947197 -19569840 - B1_Mur1 SINE Alu 0 149 24 6 1576 1206 104 15 15 chr6 129947836 129948032 -19569005 + L1_Mus2 LINE L1 6353 6548 -18 6 1576 6385 116 13 0 chr6 129948032 129948972 -19568065 - L1_Mus1 LINE L1 -166 5717 4766 6 1576 2294 72 7 0 chr6 129948972 129949276 -19567761 + L1_Mus1 LINE L1 5742 6047 -520 6 1576 3104 57 30 0 chr6 129949284 129949689 -19567348 - RLTR10C LTR ERVK -19 417 1 6 1576 11309 52 3 19 chr6 129949689 129951103 -19565934 - MMERVK10C-int LTR ERVK 0 7581 6191 6 1576 16431 42 5 1 chr6 129951087 129953066 -19563971 - MMERVK10C-int LTR ERVK -1693 5888 3903 6 1576 7727 59 5 0 chr6 129953145 129954542 -19562495 - L1Md_F3 LINE L1 -14 6570 5167 6 1576 8598 60 0 1 chr6 129954542 129955628 -19561409 - MMERVK10C-int LTR ERVK -3665 3916 2832 6 1576 558 55 0 0 chr6 129955626 129955699 -19561338 - MMERVK10C-int LTR ERVK -4957 2624 2552 6 1576 335 61 0 0 chr6 129955705 129955754 -19561283 - MMERVK10C-int LTR ERVK -5634 1947 1899 6 1576 189 154 0 0 chr6 129956079 129956118 -19560919 + T-rich Low_complexity Low_complexity 1 39 0 6 1576 4560 166 10 3 chr6 129956281 129957246 -19559791 - L1_Mus3 LINE L1 -662 5976 5001 6 1576 1272 168 12 0 chr6 129957242 129957486 -19559551 + L1_Mm LINE L1 3903 4149 -1734 6 1576 451 248 10 0 chr6 129957607 129957708 -19559329 - Lx2 LINE L1 -778 6280 6179 6 1576 24 0 0 0 chr6 129957883 129957907 -19559130 + AT_rich Low_complexity Low_complexity 1 24 0 6 1576 4726 261 28 44 chr6 129957912 129958003 -19559034 - Lx5 LINE L1 -41 7009 6918 6 1576 4867 171 51 19 chr6 129958003 129958965 -19558072 + Lx2 LINE L1 6004 6996 -1 6 1576 4726 261 28 44 chr6 129958965 129959110 -19557927 - Lx5 LINE L1 -133 6917 6798 6 1576 4039 175 118 13 chr6 129959110 129959977 -19557060 - RMER17B LTR ERVK 0 958 1 6 1576 4726 261 28 44 chr6 129959977 129961159 -19555878 - Lx5 LINE L1 -253 6797 5613 6 1576 377 254 15 23 chr6 129961156 129961289 -19555748 - Lx2 LINE L1 -845 6152 6021 6 1576 2781 166 33 2 chr6 129961272 129961856 -19555181 - Lx2 LINE L1 -873 6124 5527 6 1576 344 167 67 0 chr6 129961856 129961916 -19555121 + U6 snRNA snRNA 9 72 -35 6 1576 415 216 171 0 chr6 129961993 129962104 -19554933 + B1_Mus2 SINE Alu 17 146 -1 6 1576 252 0 0 0 chr6 129962402 129962430 -19554607 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1576 865 134 7 40 chr6 129962832 129962971 -19554066 + B1_Mus1 SINE Alu 6 141 -7 6 1576 192 40 0 0 chr6 129962971 129962996 -19554041 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 6 1576 410 369 13 7 chr6 129964347 129964497 -19552540 + ID_B1 SINE B4 63 213 -11 6 1576 333 62 0 0 chr6 129964887 129964935 -19552102 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1576 33 66 0 0 chr6 129965107 129965168 -19551869 + AT_rich Low_complexity Low_complexity 1 61 0 6 1576 1675 313 80 30 chr6 129965168 129965947 -19551090 + Lx8 LINE L1 6240 7057 -416 6 1576 326 354 31 8 chr6 129965970 129966098 -19550939 + Lx8 LINE L1 7187 7317 -156 6 1576 241 319 0 0 chr6 129966998 129967070 -19549967 - PB1D10 SINE Alu -3 114 43 6 1576 439 99 28 0 chr6 129967070 129967141 -19549896 - L1_Mur2 LINE L1 -4442 1435 1363 6 1576 2230 198 42 4 chr6 129967136 129967642 -19549395 + L1_Mur2 LINE L1 5297 5821 -56 6 1576 989 260 47 4 chr6 129967633 129967888 -19549149 + Lx4A LINE L1 6790 7055 -3 6 1576 384 22 0 0 chr6 129967927 129967972 -19549065 + (TAA)n Simple_repeat Simple_repeat 1 45 0 6 1576 599 0 14 0 chr6 129968697 129968768 -19548269 + (CAAAA)n Simple_repeat Simple_repeat 2 73 0 6 1576 240 272 36 36 chr6 129969363 129969447 -19547590 + B1F SINE Alu 66 149 0 6 1576 271 320 66 6 chr6 129969452 129969634 -19547403 + L1MB1 LINE L1 5827 6019 -149 6 1576 7546 71 2 2 chr6 129969752 129970738 -19546299 + L1Md_F2 LINE L1 5593 6578 -4 6 1576 255 330 17 35 chr6 129970976 129971092 -19545945 - ID_B1 SINE B4 -6 218 105 6 1576 4230 89 22 2 chr6 129971236 129971835 -19545202 - L1_Mus2 LINE L1 -1 6565 5955 6 1576 27 96 0 0 chr6 129975644 129975727 -19541310 + AT_rich Low_complexity Low_complexity 1 83 0 6 1576 456 270 37 28 chr6 129975883 129976100 -19540937 + Lx9 LINE L1 5809 6027 -1617 6 1576 263 102 57 14 chr6 129977562 129977632 -19539405 + T-rich Low_complexity Low_complexity 3 75 0 6 1576 244 111 0 65 chr6 129977785 129977862 -19539175 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1576 1596 219 166 13 chr6 129978189 129978652 -19538385 + RMER5 LTR ERV1 1 534 0 6 1576 402 165 0 0 chr6 129978794 129978873 -19538164 + (TAA)n Simple_repeat Simple_repeat 2 80 0 6 1576 369 0 0 0 chr6 129979125 129979166 -19537871 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1576 404 292 14 110 chr6 129979181 129979327 -19537710 - RSINE1 SINE B4 -7 158 27 6 1576 732 12 0 0 chr6 129979561 129979646 -19537391 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 1576 582 135 0 0 chr6 129979646 129979750 -19537287 + (GA)n Simple_repeat Simple_repeat 1 104 0 6 1576 429 54 0 0 chr6 129979755 129979811 -19537226 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1576 192 356 27 27 chr6 129980007 129980082 -19536955 - L2b LINE L2 -65 3310 3236 6 1576 331 263 16 78 chr6 129980222 129980350 -19536687 - PB1D9 SINE Alu 0 120 1 6 1576 195 384 51 43 chr6 129980914 129981031 -19536006 + L2b LINE L2 3238 3355 -20 6 1576 200 94 31 0 chr6 129981067 129981099 -19535938 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 1576 267 173 0 0 chr6 129981442 129981494 -19535543 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1576 476 218 29 19 chr6 129983095 129983198 -19533839 - Lx4A LINE L1 -776 6282 6179 6 1576 3664 202 67 19 chr6 129983265 129984897 -19532140 + L1_Mus3 LINE L1 5218 7002 -6 6 1576 313 250 0 0 chr6 129984921 129984989 -19532048 + B1F1 SINE Alu 77 144 -5 6 1576 287 365 33 45 chr6 129985137 129985381 -19531656 + Lx8 LINE L1 7057 7297 -176 6 1576 1086 64 6 17 chr6 129985881 129986056 -19530981 + (TAGA)n Simple_repeat Simple_repeat 4 176 0 6 1576 1286 270 37 15 chr6 129986454 129986864 -19530173 - MTC LTR MaLR -2 419 1 6 1576 259 271 57 0 chr6 129987265 129987335 -19529702 - B1F SINE Alu -12 137 64 6 1576 25 31 0 0 chr6 129988228 129988260 -19528777 + AT_rich Low_complexity Low_complexity 1 32 0 6 1576 779 157 7 28 chr6 129989997 129990141 -19526896 - L1_Mur1 LINE L1 -1311 4575 4435 6 1576 4403 205 22 23 chr6 129990140 129991085 -19525952 + Lx3C LINE L1 6026 6969 -7 6 1576 22 0 0 0 chr6 129991088 129991110 -19525927 + AT_rich Low_complexity Low_complexity 1 22 0 6 1576 459 0 0 0 chr6 129991469 129991520 -19525517 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 6 1576 799 89 0 9 chr6 129991595 129991708 -19525329 + Lx2 LINE L1 5882 5993 -1004 6 1576 7465 117 28 25 chr6 129991709 129993089 -19523948 + MusHAL1 LINE L1 541 1984 -728 6 1576 637 226 6 6 chr6 129993099 129993277 -19523760 + CT-rich Low_complexity Low_complexity 2 179 0 6 1576 313 288 93 21 chr6 129993315 129993449 -19523588 + MTD LTR MaLR 48 209 -212 6 1576 251 328 86 8 chr6 129993466 129993583 -19523454 + MTD LTR MaLR 242 367 -54 6 1576 186 103 0 0 chr6 129993585 129993614 -19523423 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 6 1576 570 29 0 0 chr6 129993657 129993725 -19523312 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 6 1576 232 242 57 57 chr6 129994773 129994843 -19522194 + PB1D10 SINE Alu 45 114 -3 6 1576 375 254 0 127 chr6 129995614 129995772 -19521265 + MT2B LTR ERVL 127 264 -337 6 1576 974 113 0 7 chr6 129995664 129995807 -19521230 + B1_Mus2 SINE Alu 6 147 0 6 1576 523 196 27 27 chr6 129996054 129996164 -19520873 - MTC LTR MaLR -1 420 311 6 1576 258 182 182 0 chr6 129996167 129996233 -19520804 - MTC LTR MaLR -335 86 9 6 1576 201 121 0 0 chr6 129996590 129996623 -19520414 + (TTA)n Simple_repeat Simple_repeat 1 33 0 6 1576 3032 227 9 21 chr6 129997355 129998022 -19519015 + Lx LINE L1 5979 6637 -17 6 1576 244 295 38 13 chr6 129998028 129998107 -19518930 + ID_B1 SINE B4 137 217 -7 6 1576 21 0 0 0 chr6 129999533 129999554 -19517483 + AT_rich Low_complexity Low_complexity 1 21 0 6 1576 249 214 0 14 chr6 129999870 129999941 -19517096 + T-rich Low_complexity Low_complexity 1 70 0 6 1576 211 216 0 0 chr6 130000000 130000051 -19516986 + T-rich Low_complexity Low_complexity 1 51 0 1 1576 2080 187 67 0 chr6 130000177 130000579 -19516458 + Lx3B LINE L1 6541 6969 -4 2 1576 373 72 14 28 chr6 130000592 130000663 -19516374 + (TAAA)n Simple_repeat Simple_repeat 4 73 0 3 1576 1152 326 46 28 chr6 130000689 130001235 -19515802 + Lx8 LINE L1 6237 6792 -681 4 1576 6137 91 6 67 chr6 130003714 130004753 -19512284 + L1Md_F2 LINE L1 1319 2293 -3590 5 1576 10668 80 5 4 chr6 130004778 130006255 -19510782 + L1Md_F2 LINE L1 4109 5586 -297 5 1576 7943 54 2 0 chr6 130006256 130007244 -19509793 + L1Md_F2 LINE L1 5588 6577 -5 5 1576 468 0 0 0 chr6 130007257 130007309 -19509728 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1576 353 39 0 19 chr6 130007346 130007398 -19509639 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 7 1576 7465 63 8 3 chr6 130007398 130009042 -19507995 - L1Md_F3 LINE L1 -33 6551 4899 8 1576 1131 125 95 14 chr6 130009042 130009253 -19507784 + L1Md_F2 LINE L1 6354 6581 -1 9 1576 1080 16 0 0 chr6 130009266 130009392 -19507645 + (GAA)n Simple_repeat Simple_repeat 2 127 0 1 1576 472 285 63 66 chr6 130009831 130009972 -19507065 + L1MB1 LINE L1 5687 5829 -339 1 1576 352 283 0 94 chr6 130009972 130010132 -19506905 + B1F SINE Alu 1 145 -4 1 1576 472 285 63 66 chr6 130010132 130010324 -19506713 + L1MB1 LINE L1 5830 6019 -149 1 1576 746 127 8 0 chr6 130010619 130010745 -19506292 + (TA)n Simple_repeat Simple_repeat 1 127 0 1 1576 841 162 0 0 chr6 130010745 130010881 -19506156 - B1_Mus1 SINE Alu -7 141 6 1 1576 749 11 11 0 chr6 130011481 130011571 -19505466 + (TC)n Simple_repeat Simple_repeat 1 91 0 1 1576 465 50 0 0 chr6 130011571 130011630 -19505407 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1576 1053 83 7 7 chr6 130014231 130014376 -19502661 + B1_Mus1 SINE Alu 3 147 -1 1 1576 230 109 43 0 chr6 130014417 130014463 -19502574 + T-rich Low_complexity Low_complexity 2 49 0 1 1576 865 179 0 0 chr6 130014481 130014621 -19502416 - B1_Mus1 SINE Alu -8 140 1 1 1576 531 0 0 0 chr6 130014751 130014810 -19502227 + (CTA)n Simple_repeat Simple_repeat 1 59 0 2 1576 261 0 0 0 chr6 130014851 130014880 -19502157 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 1576 21 0 0 0 chr6 130014972 130014993 -19502044 + AT_rich Low_complexity Low_complexity 1 21 0 2 1576 23 68 0 0 chr6 130015137 130015181 -19501856 + AT_rich Low_complexity Low_complexity 1 44 0 2 1576 1150 121 0 10 chr6 130015555 130015747 -19501290 - L1Md_F2 LINE L1 0 6582 6393 2 1576 557 289 21 10 chr6 130016180 130016372 -19500665 + Lx9 LINE L1 5830 6023 -1621 2 1576 22 35 0 0 chr6 130016625 130016654 -19500383 + AT_rich Low_complexity Low_complexity 1 29 0 2 1576 260 317 54 63 chr6 130016760 130016871 -19500166 - RSINE1 SINE B4 -10 155 46 2 1576 287 342 0 13 chr6 130017777 130017854 -19499183 - ID4 SINE ID -2 81 6 2 1576 240 35 0 0 chr6 130017902 130017931 -19499106 + (TGG)n Simple_repeat Simple_repeat 3 31 0 2 1576 1282 267 159 18 chr6 130018218 130018672 -19498365 + RMER5 LTR ERV1 13 530 -4 3 1576 202 194 16 16 chr6 130018830 130018893 -19498144 + (TAA)n Simple_repeat Simple_repeat 1 63 0 3 1576 254 349 38 63 chr6 130019421 130019580 -19497457 - RSINE1 SINE B4 0 165 11 3 1576 507 107 0 0 chr6 130019803 130019878 -19497159 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1576 582 259 7 48 chr6 130020272 130020418 -19496619 - B1_Mur1 SINE Alu 0 149 10 3 1576 1205 99 15 20 chr6 130021033 130021229 -19495808 + L1_Mus2 LINE L1 6354 6548 -18 3 1576 4904 129 0 0 chr6 130021229 130021986 -19495051 - L1_Mm LINE L1 -166 5717 4961 3 1576 2551 64 0 0 chr6 130021988 130022314 -19494723 + IAPEY2_LTR LTR ERVK 32 357 0 3 1576 1333 101 56 0 chr6 130022314 130022512 -19494525 - L1_Mm LINE L1 -909 4974 4766 3 1576 5685 85 34 0 chr6 130022512 130023311 -19493726 + L1_Mus1 LINE L1 5742 6567 0 3 24 2293 30 4 0 chr6 130023312 130023580 -19493457 + L1Md_T LINE L1 5318 5586 -297 3 1577 8394 34 1 0 chr6 130023580 130024575 -19492462 + L1Md_T LINE L1 5587 6582 0 3 1577 264 59 0 0 chr6 130024601 130024635 -19492402 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1577 4443 174 11 2 chr6 130025904 130026868 -19490169 - L1_Mus3 LINE L1 -662 5976 5001 4 1577 1344 170 0 0 chr6 130026864 130027111 -19489926 + L1_Mm LINE L1 3903 4149 -1734 4 1577 435 220 20 10 chr6 130027234 130027335 -19489702 - Lx2 LINE L1 -778 6280 6179 4 1577 4925 255 29 56 chr6 130027482 130027594 -19489443 - Lx5 LINE L1 -38 7012 6919 4 1577 4893 166 37 22 chr6 130027594 130028535 -19488502 + Lx2 LINE L1 6032 6986 -11 4 1577 4925 255 29 56 chr6 130028535 130028679 -19488358 - Lx5 LINE L1 -132 6918 6798 4 1577 4058 185 98 16 chr6 130028679 130029564 -19487473 - RMER17B LTR ERVK 0 958 1 4 1577 4925 255 29 56 chr6 130029564 130030737 -19486300 - Lx5 LINE L1 -253 6797 5621 4 1577 417 254 9 0 chr6 130030741 130030851 -19486186 - Lx2 LINE L1 -845 6152 6042 4 1577 2551 187 30 9 chr6 130030858 130031443 -19485594 - Lx2 LINE L1 -873 6124 5523 4 1577 430 79 16 0 chr6 130031448 130031511 -19485526 + U6 snRNA snRNA 9 72 -35 4 1577 484 205 81 8 chr6 130031592 130031715 -19485322 + B1_Mur3 SINE Alu 17 148 -1 4 1577 206 155 33 49 chr6 130031715 130031776 -19485261 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 5 1577 900 166 0 0 chr6 130032410 130032555 -19484482 + B1_Mus1 SINE Alu 2 146 -2 5 1577 21 71 0 0 chr6 130033750 130033792 -19483245 + AT_rich Low_complexity Low_complexity 1 42 0 5 1577 472 338 12 6 chr6 130033915 130034076 -19482961 + ID_B1 SINE B4 63 224 0 5 1577 411 38 0 0 chr6 130034428 130034481 -19482556 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1577 224 226 0 51 chr6 130034501 130034599 -19482438 + T-rich Low_complexity Low_complexity 2 94 0 5 1577 1589 326 79 23 chr6 130034767 130035543 -19481494 + Lx8 LINE L1 6240 7058 -415 5 1577 365 301 48 24 chr6 130035583 130035709 -19481328 + Lx8 LINE L1 7187 7315 -158 5 1577 308 112 71 0 chr6 130036735 130036802 -19480235 - L1_Mur2 LINE L1 -4442 1435 1365 5 1577 5778 224 34 5 chr6 130036799 130038444 -19478593 + Lx4A LINE L1 5297 7001 -57 5 1577 683 37 18 18 chr6 130038465 130038574 -19478463 + (CTA)n Simple_repeat Simple_repeat 1 109 0 5 1577 28 0 0 0 chr6 130038586 130038614 -19478423 + AT_rich Low_complexity Low_complexity 1 28 0 6 1577 303 260 37 21 chr6 130039471 130039611 -19477426 + L1MA10 LINE L1 5688 5829 -342 6 1577 269 259 36 36 chr6 130039705 130039789 -19477248 + B1F SINE Alu 66 149 0 6 1577 237 302 117 60 chr6 130039819 130040115 -19476922 + L1MA10 LINE L1 5857 6179 -155 6 1577 891 148 0 0 chr6 130040115 130040257 -19476780 + B1_Mus2 SINE Alu 2 143 -4 6 1577 783 92 0 0 chr6 130040257 130040388 -19476649 + (GA)n Simple_repeat Simple_repeat 2 132 0 6 1577 237 302 117 60 chr6 130040388 130040509 -19476528 + L1MA10 LINE L1 6180 6298 -36 6 1577 236 345 49 25 chr6 130040588 130040710 -19476327 - B1F SINE Alu -1 148 24 6 1577 272 48 24 0 chr6 130042165 130042207 -19474830 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 6 1577 848 140 7 0 chr6 130043930 130044066 -19472971 - B1_Mus1 SINE Alu -9 139 3 6 1577 765 22 0 0 chr6 130045159 130045250 -19471787 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 1577 563 265 34 39 chr6 130045380 130045584 -19471453 + Lx9 LINE L1 5807 6009 -1635 6 1577 9403 77 26 2 chr6 130046804 130048589 -19468448 - L1Md_F2 LINE L1 -15 6567 4724 7 1577 4937 19 0 0 chr6 130048589 130049154 -19467883 - L1Md_A LINE L1 0 6582 6018 7 1577 9403 95 44 4 chr6 130049154 130049419 -19467618 - L1Md_F2 LINE L1 -1160 4723 4453 7 1577 184 148 16 16 chr6 130049706 130049768 -19467269 + T-rich Low_complexity Low_complexity 4 65 0 7 1577 1192 238 184 22 chr6 130050288 130050737 -19466300 + RMER5 LTR ERV1 13 534 0 7 1577 219 227 0 0 chr6 130050891 130050957 -19466080 + (TAA)n Simple_repeat Simple_repeat 1 66 0 7 1577 275 365 19 69 chr6 130051478 130051637 -19465400 - RSINE1 SINE B4 -4 161 11 7 1577 684 107 0 0 chr6 130051859 130051962 -19465075 + (CA)n Simple_repeat Simple_repeat 2 104 0 7 1577 598 259 7 41 chr6 130052354 130052499 -19464538 - B1_Mur1 SINE Alu 0 149 10 7 1577 1127 145 5 25 chr6 130053122 130053320 -19463717 + L1_Mus2 LINE L1 6355 6548 -18 7 1577 6080 122 15 1 chr6 130053320 130054259 -19462778 - L1_Mus1 LINE L1 -166 5717 4766 7 1577 5371 98 32 9 chr6 130054259 130054909 -19462128 + L1_Mus1 LINE L1 5742 6391 -176 7 1577 2401 71 0 185 chr6 130054909 130055357 -19461680 - RLTR10B2 LTR ERVK 0 365 1 8 1577 5371 98 32 9 chr6 130055357 130055548 -19461489 + L1_Mus1 LINE L1 6392 6567 0 7 1577 973 118 0 6 chr6 130055603 130055765 -19461272 + L1_Mus2 LINE L1 6405 6565 -1 8 1577 211 140 0 23 chr6 130055770 130055814 -19461223 + A-rich Low_complexity Low_complexity 1 43 0 8 1577 237 33 0 0 chr6 130055927 130055957 -19461080 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 8 1577 212 0 0 35 chr6 130056256 130056285 -19460752 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 1577 519 17 0 0 chr6 130056303 130056363 -19460674 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1577 207 139 0 0 chr6 130057056 130057092 -19459945 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1577 4624 145 10 1 chr6 130057256 130058197 -19458840 - L1_Mus3 LINE L1 -662 5976 5024 8 1577 1283 162 12 16 chr6 130058218 130058463 -19458574 + L1_Mm LINE L1 3906 4149 -1734 8 1577 431 257 10 0 chr6 130058588 130058689 -19458348 - Lx4A LINE L1 -778 6280 6179 8 1577 26 0 0 0 chr6 130058862 130058888 -19458149 + AT_rich Low_complexity Low_complexity 1 26 0 9 1577 4953 255 29 48 chr6 130058890 130058987 -19458050 - Lx5 LINE L1 -38 7012 6917 9 1577 4699 175 44 31 chr6 130058987 130059300 -19457737 + Lx2 LINE L1 6006 6331 -666 9 1577 2481 163 26 5 chr6 130059300 130059725 -19457312 - RLTR10C LTR ERVK -2 434 1 9 1577 4699 175 44 31 chr6 130059725 130060389 -19456648 + Lx2 LINE L1 6332 6996 -1 9 1577 4953 255 29 48 chr6 130060389 130060541 -19456496 - Lx5 LINE L1 -134 6916 6795 9 1577 4308 184 87 3 chr6 130060541 130061424 -19455613 - RMER17B LTR ERVK 0 958 2 9 1577 4953 255 29 48 chr6 130061424 130062600 -19454437 - Lx5 LINE L1 -256 6794 5613 9 1577 2804 193 24 4 chr6 130062597 130062712 -19454325 - Lx2A1 LINE L1 -859 6149 6036 9 1577 827 46 9 0 chr6 130062712 130062820 -19454217 + (TCCC)n Simple_repeat Simple_repeat 4 112 0 9 1577 2804 197 23 3 chr6 130062820 130063322 -19453715 - Lx2A1 LINE L1 -973 6035 5524 9 1577 409 68 17 0 chr6 130063323 130063382 -19453655 + U6 snRNA snRNA 13 72 -35 9 1577 422 244 95 9 chr6 130063462 130063578 -19453459 + B1_Mur3 SINE Alu 17 142 -7 9 1577 248 26 0 71 chr6 130063578 130063620 -19453417 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1577 5690 66 13 0 chr6 130064272 130065017 -19452020 - L1Md_F3 LINE L1 -14 6570 5816 1 1577 981 130 0 0 chr6 130065031 130065177 -19451860 + B1_Mus1 SINE Alu 2 147 -1 1 1577 180 179 51 0 chr6 130066305 130066344 -19450693 + L2 LINE L2 366 406 -3013 1 1577 487 289 37 31 chr6 130066524 130066685 -19450352 + ID_B1 SINE B4 63 224 0 1 1577 552 15 0 0 chr6 130067037 130067102 -19449935 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1577 288 133 0 0 chr6 130067195 130067255 -19449782 + (T)n Simple_repeat Simple_repeat 1 60 0 1 1577 1471 325 84 27 chr6 130067424 130068199 -19448838 + Lx8 LINE L1 6240 7058 -415 1 1577 334 342 17 8 chr6 130068238 130068356 -19448681 + Lx8 LINE L1 7187 7305 -168 1 1577 214 317 0 0 chr6 130069329 130069389 -19447648 - PB1D10 SINE Alu -15 102 43 1 1577 317 105 35 0 chr6 130069389 130069446 -19447591 - L1_Mur2 LINE L1 -4442 1435 1377 1 1577 5688 217 38 6 chr6 130069455 130071072 -19445965 + Lx4A LINE L1 5297 6975 -83 1 1577 668 38 19 19 chr6 130071117 130071223 -19445814 + (CTA)n Simple_repeat Simple_repeat 1 106 0 1 1577 28 0 0 0 chr6 130071235 130071263 -19445774 + AT_rich Low_complexity Low_complexity 1 28 0 1 1577 302 290 42 28 chr6 130072342 130072485 -19444552 + L1MA10 LINE L1 5685 5829 -342 1 1577 260 259 36 36 chr6 130072579 130072663 -19444374 + B1F SINE Alu 66 149 0 1 1577 247 312 111 46 chr6 130072693 130072987 -19444050 + L1MA10 LINE L1 5857 6177 -157 1 1577 870 147 7 0 chr6 130072987 130073130 -19443907 + B1_Mus2 SINE Alu 2 145 -2 1 1577 720 35 0 0 chr6 130073130 130073217 -19443820 + (GA)n Simple_repeat Simple_repeat 2 88 0 1 1577 247 312 111 46 chr6 130073217 130073334 -19443703 + L1MA10 LINE L1 6178 6295 -39 1 1577 264 286 78 95 chr6 130073423 130073539 -19443498 - ID_B1 SINE B4 -6 218 105 1 1577 4447 84 7 2 chr6 130073688 130074296 -19442741 - L1_Mus2 LINE L1 -1 6565 5955 1 1577 200 150 0 32 chr6 130075640 130075702 -19441335 + A-rich Low_complexity Low_complexity 2 61 0 1 1577 761 169 7 0 chr6 130077412 130077548 -19439489 - B1_Mus1 SINE Alu -9 139 3 1 1577 21 36 0 0 chr6 130078011 130078039 -19438998 + AT_rich Low_complexity Low_complexity 1 28 0 1 1577 508 281 34 39 chr6 130078782 130078986 -19438051 + Lx9 LINE L1 5807 6009 -1635 1 1577 316 341 88 29 chr6 130079374 130079510 -19437527 - RSINE1 SINE B4 -10 155 12 1 1577 9422 81 27 2 chr6 130080197 130082253 -19434784 - L1Md_F2 LINE L1 -15 6567 4452 1 1577 27 29 0 0 chr6 130082388 130082422 -19434615 + AT_rich Low_complexity Low_complexity 1 34 0 1 1577 6772 57 1 0 chr6 130082431 130083274 -19433763 - L1Md_F2 LINE L1 -12 6570 5727 1 1577 182 105 26 0 chr6 130083458 130083496 -19433541 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 1577 1457 241 168 7 chr6 130084018 130084464 -19432573 + RMER5 LTR ERV1 13 530 -4 1 1577 186 246 0 0 chr6 130084627 130084688 -19432349 + (TAA)n Simple_repeat Simple_repeat 3 63 0 1 1577 248 290 51 127 chr6 130085209 130085367 -19431670 - RSINE1 SINE B4 0 165 20 1 1577 507 33 0 0 chr6 130085591 130085652 -19431385 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1577 614 252 7 41 chr6 130086044 130086189 -19430848 - B1_Mur1 SINE Alu 0 149 10 1 1577 1128 109 10 30 chr6 130086810 130087008 -19430029 + L1_Mus2 LINE L1 6355 6548 -18 1 1577 6280 112 18 3 chr6 130087008 130087946 -19429091 - L1_Mus1 LINE L1 -166 5717 4766 1 1577 5454 99 31 9 chr6 130087946 130088597 -19428440 + L1_Mus1 LINE L1 5742 6391 -176 1 1577 2506 74 0 139 chr6 130088597 130089021 -19428016 - RLTR10B2 LTR ERVK 0 365 1 1 1577 5454 99 31 9 chr6 130089021 130089215 -19427822 + L1_Mus1 LINE L1 6392 6567 0 1 1577 1004 106 0 6 chr6 130089222 130089384 -19427653 + L1_Mus2 LINE L1 6405 6565 -1 1 1577 42 0 0 0 chr6 130089388 130089430 -19427607 + AT_rich Low_complexity Low_complexity 1 42 0 1 1577 252 0 0 0 chr6 130089556 130089584 -19427453 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1577 197 119 0 23 chr6 130089884 130089927 -19427110 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 1 1577 630 26 0 0 chr6 130089935 130090011 -19427026 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1577 22 70 0 0 chr6 130090704 130090747 -19426290 + AT_rich Low_complexity Low_complexity 1 43 0 1 1577 4804 145 9 1 chr6 130090902 130091845 -19425192 - L1_Mus3 LINE L1 -662 5976 5022 1 1577 1350 152 4 24 chr6 130091865 130092114 -19424923 + L1_Mm LINE L1 3906 4149 -1734 1 1577 407 250 20 10 chr6 130092239 130092340 -19424697 - Lx4A LINE L1 -778 6280 6179 1 1577 26 0 0 0 chr6 130092511 130092537 -19424500 + AT_rich Low_complexity Low_complexity 1 26 0 1 1577 4852 252 28 51 chr6 130092545 130092634 -19424403 - Lx5 LINE L1 -46 7004 6917 1 1577 4650 178 40 32 chr6 130092634 130092947 -19424090 + Lx2 LINE L1 6006 6331 -666 1 1577 2658 157 0 7 chr6 130092947 130093384 -19423653 - RLTR10C LTR ERVK -2 434 1 1 1577 4650 178 40 32 chr6 130093384 130094054 -19422983 + Lx2 LINE L1 6332 6996 -1 1 1577 4852 252 28 51 chr6 130094054 130094200 -19422837 - Lx5 LINE L1 -134 6916 6794 1 1577 4321 185 87 3 chr6 130094200 130095083 -19421954 - RMER17B LTR ERVK 0 958 2 1 1577 4852 252 28 51 chr6 130095083 130096260 -19420777 - Lx5 LINE L1 -257 6793 5623 1 1577 2740 198 22 0 chr6 130096266 130096381 -19420656 - Lx2A1 LINE L1 -859 6149 6030 1 1577 249 33 0 0 chr6 130096381 130096411 -19420626 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 1 1577 2740 201 22 0 chr6 130096411 130096909 -19420128 - Lx2A1 LINE L1 -979 6029 5527 1 1577 468 63 16 0 chr6 130096909 130096972 -19420065 + U6 snRNA snRNA 9 72 -35 1 1577 397 262 80 24 chr6 130097051 130097176 -19419861 + B1_Mur3 SINE Alu 17 148 -1 1 1577 5704 54 26 0 chr6 130097853 130098589 -19418448 - L1Md_F3 LINE L1 -14 6570 5816 1 1577 936 144 0 0 chr6 130098603 130098749 -19418288 + B1_Mus1 SINE Alu 2 147 -1 1 1577 487 289 37 31 chr6 130100108 130100269 -19416768 + ID_B1 SINE B4 63 224 0 1 1577 321 47 0 0 chr6 130100621 130100664 -19416373 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1577 1191 305 172 34 chr6 130100953 130101673 -19415364 + Lx8 LINE L1 6240 7058 -415 1 1577 363 331 31 8 chr6 130101713 130101841 -19415196 + Lx8 LINE L1 7187 7317 -156 1 1577 320 162 44 0 chr6 130102866 130102934 -19414103 - L1_Mur2 LINE L1 -4442 1435 1365 1 1577 5764 217 44 3 chr6 130102931 130104562 -19412475 + Lx4A LINE L1 5297 7001 -57 1 1577 350 42 21 0 chr6 130104587 130104635 -19412402 + (CTA)n Simple_repeat Simple_repeat 1 49 0 1 1577 29 28 0 0 chr6 130104648 130104684 -19412353 + AT_rich Low_complexity Low_complexity 1 36 0 1 1577 24 32 0 0 chr6 130104738 130104769 -19412268 + AT_rich Low_complexity Low_complexity 1 31 0 1 1577 265 272 55 62 chr6 130105772 130105917 -19411120 + L1M2 LINE L1 5686 5829 -342 1 1577 320 250 0 35 chr6 130106011 130106098 -19410939 + B1F SINE Alu 66 149 0 1 1577 192 40 0 0 chr6 130106200 130106225 -19410812 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1577 287 231 86 111 chr6 130106648 130106765 -19410272 - ID_B1 SINE B4 -6 218 105 1 1577 250 92 38 38 chr6 130108207 130108286 -19408751 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 1 1577 746 176 7 0 chr6 130110000 130110136 -19406901 - B1_Mus1 SINE Alu -9 139 3 1 1577 469 135 22 0 chr6 130111223 130111312 -19405725 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 1577 525 32 0 0 chr6 130111312 130111375 -19405662 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1577 531 270 34 39 chr6 130111507 130111711 -19405326 + Lx9 LINE L1 5807 6009 -1635 1 1577 321 323 52 59 chr6 130112112 130112247 -19404790 - RSINE1 SINE B4 -23 142 9 1 1577 1498 239 176 7 chr6 130113792 130114235 -19402802 + RMER5 LTR ERV1 13 530 -4 1 1577 252 212 0 0 chr6 130114393 130114459 -19402578 + (TAA)n Simple_repeat Simple_repeat 1 66 0 1 1577 287 313 53 107 chr6 130114979 130115129 -19401908 - RSINE1 SINE B4 -4 161 20 1 1577 708 89 0 0 chr6 130115361 130115462 -19401575 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1577 568 246 7 45 chr6 130115854 130116008 -19401029 - B1_Mur1 SINE Alu 0 149 1 1 1577 1260 114 5 20 chr6 130116617 130116814 -19400223 + L1_Mus2 LINE L1 6355 6548 -18 1 1577 6139 119 14 5 chr6 130116814 130117758 -19399279 - L1_Mus1 LINE L1 -166 5717 4766 1 1577 5418 101 31 9 chr6 130117758 130118409 -19398628 + L1_Mus1 LINE L1 5742 6394 -173 1 1577 2515 68 0 155 chr6 130118409 130118841 -19398196 - RLTR10B2 LTR ERVK 0 365 1 1 1577 5418 101 31 9 chr6 130118841 130119062 -19397975 + L1_Mus1 LINE L1 6395 6567 0 1 1577 964 130 0 6 chr6 130119069 130119231 -19397806 + L1_Mus2 LINE L1 6405 6565 -1 1 1577 42 0 0 0 chr6 130119235 130119277 -19397760 + AT_rich Low_complexity Low_complexity 1 42 0 1 1577 218 32 0 31 chr6 130119723 130119755 -19397282 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1577 549 68 0 0 chr6 130119763 130119837 -19397200 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1577 4772 144 9 1 chr6 130120715 130121658 -19395379 - L1_Mus3 LINE L1 -662 5976 5022 1 1577 1244 153 12 20 chr6 130121678 130121924 -19395113 + L1_Mur2 LINE L1 3900 4143 -1734 1 1577 361 297 10 0 chr6 130122049 130122150 -19394887 - Lx2 LINE L1 -778 6280 6179 1 1577 24 0 0 0 chr6 130122324 130122348 -19394689 + AT_rich Low_complexity Low_complexity 1 24 0 1 1577 352 296 0 0 chr6 130122348 130122446 -19394591 - Lx5 LINE L1 -36 7014 6917 1 1577 4773 176 39 39 chr6 130122447 130122760 -19394277 + Lx2 LINE L1 6006 6331 -666 1 1577 2408 136 2 141 chr6 130122760 130123264 -19393773 - RLTR10C LTR ERVK -2 434 1 1 1577 4773 176 39 39 chr6 130123264 130123938 -19393099 + Lx2 LINE L1 6332 6993 -4 1 1577 4815 251 33 23 chr6 130123966 130124080 -19392957 - Lx5 LINE L1 -136 6914 6795 1 1577 4282 186 87 3 chr6 130124080 130124963 -19392074 - RMER17B LTR ERVK 0 958 2 1 1577 4815 251 33 23 chr6 130124963 130126138 -19390899 - Lx5 LINE L1 -256 6794 5613 1 1577 2665 191 18 42 chr6 130126135 130126776 -19390261 - Lx2 LINE L1 -845 6152 5523 1 1577 468 63 16 0 chr6 130126781 130126844 -19390193 + U6 snRNA snRNA 9 72 -35 1 1577 470 221 81 8 chr6 130126923 130127046 -19389991 + B1_Mur3 SINE Alu 17 148 -1 1 1577 5741 58 13 3 chr6 130127726 130128472 -19388565 - L1Md_F3 LINE L1 -15 6569 5816 1 1577 949 124 0 27 chr6 130128486 130128635 -19388402 + B1_Mus1 SINE Alu 2 146 -2 1 1577 481 331 12 6 chr6 130129992 130130153 -19386884 + ID_B1 SINE B4 63 224 0 1 1577 207 0 0 0 chr6 130130504 130130527 -19386510 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1577 229 217 14 28 chr6 130130572 130130643 -19386394 + T-rich Low_complexity Low_complexity 2 71 0 1 1577 1597 320 81 26 chr6 130130843 130131619 -19385418 + Lx8 LINE L1 6240 7058 -415 2 1577 363 331 31 8 chr6 130131661 130131789 -19385248 + Lx8 LINE L1 7187 7317 -156 2 1577 264 140 35 0 chr6 130132810 130132867 -19384170 - L1_Mur2 LINE L1 -4442 1435 1377 2 1577 5515 213 34 27 chr6 130132876 130134542 -19382495 + Lx4A LINE L1 5297 6975 -83 2 1577 666 31 10 20 chr6 130134597 130134696 -19382341 + (CTA)n Simple_repeat Simple_repeat 1 98 0 2 1577 28 0 0 0 chr6 130134708 130134736 -19382301 + AT_rich Low_complexity Low_complexity 1 28 0 2 1577 22 0 0 0 chr6 130134840 130134862 -19382175 + AT_rich Low_complexity Low_complexity 1 22 0 2 1577 227 232 69 42 chr6 130135313 130135385 -19381652 - Charlie1b DNA MER1_type -368 155 82 2 1577 278 329 14 7 chr6 130135815 130135959 -19381078 + L1M3 LINE L1 5685 5829 -360 2 1577 268 259 36 36 chr6 130136053 130136137 -19380900 + B1F SINE Alu 66 149 0 2 1577 867 166 0 0 chr6 130136462 130136607 -19380430 + B1_Mus2 SINE Alu 2 146 -1 2 1577 1188 98 0 0 chr6 130136625 130136798 -19380239 + (GA)n Simple_repeat Simple_repeat 2 174 0 2 1577 267 287 43 9 chr6 130136798 130136914 -19380123 + L1MA10 LINE L1 6177 6296 -38 2 1577 295 267 78 95 chr6 130137003 130137119 -19379918 - ID_B1 SINE B4 -6 218 105 2 1577 4536 76 7 2 chr6 130137268 130137876 -19379161 - L1_Mus2 LINE L1 -1 6565 5955 2 1577 216 0 0 0 chr6 130139813 130139837 -19377200 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1577 23 68 0 0 chr6 130141133 130141177 -19375860 + AT_rich Low_complexity Low_complexity 1 44 0 2 1577 27 73 0 0 chr6 130141745 130141800 -19375237 + AT_rich Low_complexity Low_complexity 1 55 0 2 1577 428 268 42 32 chr6 130141957 130142173 -19374864 + Lx9 LINE L1 5810 6027 -1617 2 1577 260 27 0 26 chr6 130143654 130143692 -19373345 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2 1577 287 356 0 0 chr6 130143716 130143806 -19373231 - PB1D10 SINE Alu -21 96 7 2 1577 194 62 31 0 chr6 130143845 130143877 -19373160 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1577 1623 214 172 11 chr6 130144210 130144668 -19372369 + RMER5 LTR ERV1 1 532 -2 2 1577 352 183 11 11 chr6 130144795 130144889 -19372148 + (TAA)n Simple_repeat Simple_repeat 1 94 0 2 1577 414 0 0 0 chr6 130145144 130145190 -19371847 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1577 419 275 14 109 chr6 130145203 130145350 -19371687 - RSINE1 SINE B4 -7 158 26 2 1577 405 271 16 78 chr6 130146045 130146173 -19370864 - PB1D9 SINE Alu 0 120 1 2 1577 201 94 0 0 chr6 130146903 130146935 -19370102 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1577 1188 41 0 0 chr6 130147283 130147429 -19369608 + (CATATA)n Simple_repeat Simple_repeat 5 150 0 2 1577 466 269 0 0 chr6 130149019 130149123 -19367914 - Lx4A LINE L1 -776 6282 6179 2 1577 6261 158 15 11 chr6 130149190 130150605 -19366432 + L1_Mus3 LINE L1 5218 6629 -9 2 1577 21 0 0 0 chr6 130150605 130150626 -19366411 + AT_rich Low_complexity Low_complexity 1 21 0 2 1577 319 265 0 0 chr6 130150631 130150699 -19366338 + B1F1 SINE Alu 77 144 -5 2 1577 275 373 20 35 chr6 130150847 130151047 -19365990 + Lx8 LINE L1 7057 7253 -220 2 1577 551 103 10 0 chr6 130151588 130151685 -19365352 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 2 1577 1659 253 24 7 chr6 130152096 130152510 -19364527 - MTC LTR MaLR 0 421 1 2 1577 7703 50 3 9 chr6 130152546 130153669 -19363368 - L1Md_F2 LINE L1 0 6582 5465 2 1577 23 54 0 0 chr6 130153988 130154025 -19363012 + AT_rich Low_complexity Low_complexity 1 37 0 2 197 1137 68 0 0 chr6 130154378 130154525 -19362512 + B1_Mm SINE Alu 1 147 0 2 1578 200 200 0 0 chr6 130154525 130154560 -19362477 + A-rich Low_complexity Low_complexity 4 38 0 2 1578 215 157 19 38 chr6 130155198 130155230 -19361807 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 1578 243 0 0 0 chr6 130155230 130155257 -19361780 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1578 215 157 19 38 chr6 130155257 130155277 -19361760 + (TA)n Simple_repeat Simple_repeat 2 20 0 2 1578 236 370 0 0 chr6 130156077 130156158 -19360879 + PB1D10 SINE Alu 4 84 -33 2 1578 2147 162 8 2 chr6 130157571 130157967 -19359070 - L1_Mur2 LINE L1 -1043 4843 4446 2 1578 4297 222 20 22 chr6 130157965 130158933 -19358104 + Lx3C LINE L1 6004 6969 -7 2 1578 21 57 0 0 chr6 130158947 130158982 -19358055 + AT_rich Low_complexity Low_complexity 1 35 0 2 1578 207 0 0 0 chr6 130159323 130159346 -19357691 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1578 3614 192 45 16 chr6 130159390 130160142 -19356895 + Lx LINE L1 5881 6654 0 2 1578 461 224 26 0 chr6 130160186 130160302 -19356735 - ORR1A4-int LTR MaLR -1844 119 1 2 1578 1128 236 32 62 chr6 130160302 130160641 -19356396 - ORR1A4 LTR MaLR 0 329 1 2 1578 798 321 60 48 chr6 130160651 130161132 -19355905 + Lx8 LINE L1 6829 7315 -158 2 1578 918 170 45 5 chr6 130161924 130162125 -19354912 - L1_Mur2 LINE L1 -2372 3505 3297 2 1578 2542 186 188 24 chr6 130162124 130162867 -19354170 + L1_Mur1 LINE L1 48 912 -6070 2 1578 7921 167 124 3 chr6 130162865 130163921 -19353116 - L1_Mur2 LINE L1 -2581 3296 2056 2 1578 975 18 0 0 chr6 130163921 130164034 -19353003 + (TG)n Simple_repeat Simple_repeat 1 113 0 2 1578 7921 169 121 3 chr6 130164034 130164837 -19352200 - L1_Mur2 LINE L1 -3822 2055 1212 2 1578 727 285 4 84 chr6 130164854 130165080 -19351957 - L1_Mur2 LINE L1 -6229 857 650 2 1578 10360 147 40 13 chr6 130165143 130167851 -19349186 + L1VL4 LINE L1 65 2833 -726 2 1578 836 134 9 36 chr6 130167851 130168076 -19348961 + CT-rich Low_complexity Low_complexity 1 218 0 2 1578 22 0 0 0 chr6 130168085 130168107 -19348930 + AT_rich Low_complexity Low_complexity 1 22 0 2 1578 558 310 202 11 chr6 130168116 130168393 -19348644 + MTC LTR MaLR 38 367 -54 2 1578 1137 108 0 0 chr6 130168405 130168581 -19348456 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 2 1578 320 388 26 0 chr6 130169880 130170032 -19347005 + ID_B1 SINE B4 63 218 -6 2 1578 316 151 0 0 chr6 130170536 130170589 -19346448 + B1_Mur4 SINE Alu 2 54 -96 2 1578 1397 194 21 14 chr6 130170592 130170880 -19346157 + Lx3B LINE L1 6679 6968 -5 2 1578 234 156 0 0 chr6 130170896 130170941 -19346096 + GA-rich Low_complexity Low_complexity 2 46 0 2 1578 378 0 0 0 chr6 130170951 130170993 -19346044 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 2 1578 974 344 50 27 chr6 130171019 130171536 -19345501 + Lx8 LINE L1 6237 6765 -708 2 1578 748 278 47 43 chr6 130173022 130173323 -19343714 + Lx8 LINE L1 6761 7062 -411 2 1578 273 354 21 0 chr6 130173377 130173473 -19343564 + Lx8 LINE L1 7200 7297 -176 2 1578 333 0 0 0 chr6 130174860 130174897 -19342140 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1578 3061 173 14 5 chr6 130174903 130175525 -19341512 - L1_Mur2 LINE L1 -3824 2053 1426 2 1578 1713 169 25 0 chr6 130175546 130175860 -19341177 + L1_Mur2 LINE L1 5298 5619 -258 2 1578 23 68 0 0 chr6 130176337 130176381 -19340656 + AT_rich Low_complexity Low_complexity 1 44 0 2 1578 677 202 0 24 chr6 130176871 130177038 -19339999 + L1Md_F2 LINE L1 6420 6582 0 2 1578 211 284 136 0 chr6 130177046 130177127 -19339910 - B1F2 SINE Alu -15 134 43 2 1578 21 57 0 0 chr6 130177670 130177705 -19339332 + AT_rich Low_complexity Low_complexity 1 35 0 2 1578 627 14 0 0 chr6 130178030 130178102 -19338935 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1578 198 118 0 0 chr6 130178102 130178135 -19338902 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1578 1649 130 36 0 chr6 130179638 130179915 -19337122 - L1_Mus3 LINE L1 -38 6600 6314 2 1578 192 222 0 0 chr6 130180062 130180134 -19336903 + A-rich Low_complexity Low_complexity 1 72 0 2 1578 439 292 33 19 chr6 130182209 130182422 -19334615 + Lx9 LINE L1 5807 6022 -1622 2 1578 296 313 8 65 chr6 130182855 130182978 -19334059 - RSINE1 SINE B4 -45 120 5 2 1578 25 65 0 0 chr6 130183615 130183661 -19333376 + AT_rich Low_complexity Low_complexity 1 46 0 2 1578 258 351 0 13 chr6 130183832 130183910 -19333127 - ID4 SINE ID -2 81 5 2 1578 266 197 0 116 chr6 130183960 130184029 -19333008 - PB1D10 SINE Alu -2 115 55 2 1578 1503 232 169 11 chr6 130184487 130184936 -19332101 + RMER5 LTR ERV1 15 534 0 2 1578 384 149 21 11 chr6 130185078 130185173 -19331864 + (TAA)n Simple_repeat Simple_repeat 2 97 0 2 1578 369 43 0 0 chr6 130185330 130185377 -19331660 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1578 333 0 0 0 chr6 130185377 130185413 -19331624 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1578 396 294 31 117 chr6 130185425 130185587 -19331450 - RSINE1 SINE B4 -7 158 11 2 1578 396 0 0 0 chr6 130185804 130185848 -19331189 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1578 444 235 8 70 chr6 130186257 130186385 -19330652 - PB1D9 SINE Alu 0 120 1 2 1578 209 277 10 0 chr6 130187480 130187581 -19329456 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 1578 45 19 0 0 chr6 130188851 130188903 -19328134 + AT_rich Low_complexity Low_complexity 1 52 0 2 1578 257 0 0 29 chr6 130189161 130189195 -19327842 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 2 1578 648 120 0 49 chr6 130189277 130189400 -19327637 - L1_Mus1 LINE L1 -1 6566 6450 2 1578 27770 128 26 3 chr6 130189400 130194910 -19322127 - L1_Mus1 LINE L1 -340 6227 586 2 1578 24 53 0 0 chr6 130195207 130195245 -19321792 + AT_rich Low_complexity Low_complexity 1 38 0 2 1578 225 361 36 0 chr6 130195385 130195468 -19321569 + B4A SINE B4 60 145 -147 2 1578 275 309 0 0 chr6 130195413 130195481 -19321556 + ID_B1 SINE B4 87 154 -70 2 1578 366 107 27 0 chr6 130195483 130195558 -19321479 + L1_Mus4 LINE L1 6553 6629 -7 2 1578 230 353 50 41 chr6 130195558 130195608 -19321429 + B1F SINE Alu 79 127 -22 2 1578 219 353 0 0 chr6 130195586 130195654 -19321383 + B1_Mur2 SINE Alu 77 144 -5 2 1578 231 318 0 34 chr6 130196408 130196496 -19320541 - MLT1A1 LTR MaLR -8 400 316 2 1578 688 80 9 9 chr6 130196542 130196656 -19320381 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 2 1578 301 324 96 0 chr6 130196723 130196859 -19320178 + L1MD LINE L1 5701 5849 -2146 2 1578 1511 253 29 2 chr6 130197069 130197477 -19319560 - MTC LTR MaLR -2 419 1 2 1578 25 31 0 0 chr6 130197826 130197858 -19319179 + AT_rich Low_complexity Low_complexity 1 32 0 3 1578 238 282 56 0 chr6 130197880 130197951 -19319086 - B1F SINE Alu -11 138 64 3 1578 220 277 46 0 chr6 130200577 130200642 -19316395 + PB1D10 SINE Alu 48 115 -2 3 1578 2122 170 10 12 chr6 130200680 130201090 -19315947 - L1_Mur2 LINE L1 -1043 4843 4435 3 1578 4109 209 15 17 chr6 130201114 130201989 -19315048 + Lx3C LINE L1 6097 6969 -7 3 1578 26 0 0 0 chr6 130201992 130202018 -19315019 + AT_rich Low_complexity Low_complexity 1 26 0 3 1578 255 61 0 0 chr6 130202379 130202412 -19314625 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1578 3727 182 34 13 chr6 130202487 130203245 -19313792 + Lx LINE L1 5881 6654 0 3 1578 520 217 26 0 chr6 130203287 130203402 -19313635 - ORR1A4-int LTR MaLR -1845 118 1 3 1578 1299 208 32 62 chr6 130203402 130203741 -19313296 - ORR1A4 LTR MaLR 0 329 1 3 1578 619 320 73 46 chr6 130203751 130204189 -19312848 + Lx8 LINE L1 6829 7278 -195 3 1578 940 164 39 10 chr6 130204947 130205150 -19311887 - L1_Mur2 LINE L1 -2372 3505 3297 3 1578 2392 198 69 51 chr6 130205149 130205897 -19311140 + L1_Mur1 LINE L1 48 913 -6069 3 1578 4645 249 132 8 chr6 130205893 130206034 -19311003 - L1_Mur2 LINE L1 -2581 3305 3171 3 1578 2697 34 0 44 chr6 130206034 130206376 -19310661 - IAPLTR2b LTR ERVK 0 327 1 3 1578 7111 189 53 5 chr6 130206376 130207293 -19309744 - L1_Mur2 LINE L1 -2716 3170 2053 3 1578 255 79 0 0 chr6 130207293 130207331 -19309706 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1578 7111 176 35 5 chr6 130207331 130208109 -19308928 - L1_Mur2 LINE L1 -3825 2052 1241 3 1578 680 293 4 88 chr6 130208146 130208374 -19308663 - L1_Mur2 LINE L1 -6228 858 650 3 1578 7157 175 26 71 chr6 130208423 130210473 -19306564 + L1VL4 LINE L1 49 1930 -1629 3 1578 1738 66 0 0 chr6 130210473 130210700 -19306337 + L1Md_F2 LINE L1 6344 6570 -12 3 1578 7157 160 37 116 chr6 130210700 130211601 -19305436 + L1VL4 LINE L1 1931 2836 -723 3 1578 1128 89 6 16 chr6 130211614 130211796 -19305241 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 1578 576 146 0 0 chr6 130211796 130211899 -19305138 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 3 1578 330 297 213 21 chr6 130211937 130212078 -19304959 + MTD LTR MaLR 48 215 -206 3 1578 242 116 0 23 chr6 130212213 130212257 -19304780 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 3 1578 488 224 43 56 chr6 130212283 130212522 -19304515 - RLTR13B1 LTR ERVK -782 196 1 3 1578 404 111 0 0 chr6 130212525 130212588 -19304449 - L1_Mur2 LINE L1 -2518 3359 3297 3 1578 10684 159 44 15 chr6 130212587 130215563 -19301474 + L1VL4 LINE L1 48 3188 -724 3 1578 887 135 0 6 chr6 130215565 130215722 -19301315 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 3 1578 435 290 172 61 chr6 130215727 130216024 -19301013 + MTA_Mm LTR MaLR 13 342 -54 3 1578 531 117 19 10 chr6 130216026 130216130 -19300907 + (GAAA)n Simple_repeat Simple_repeat 2 106 0 3 1578 332 399 14 0 chr6 130217381 130217524 -19299513 + ID_B1 SINE B4 63 207 -17 3 1578 897 152 14 0 chr6 130218035 130218180 -19298857 + B1_Mus1 SINE Alu 2 148 0 3 1578 604 198 0 26 chr6 130218423 130218537 -19298500 - MTC LTR MaLR 0 421 311 3 1578 292 130 217 0 chr6 130218521 130218590 -19298447 - MTC LTR MaLR -329 92 9 3 1578 25 0 0 0 chr6 130220043 130220068 -19296969 + AT_rich Low_complexity Low_complexity 1 25 0 3 1578 422 333 19 12 chr6 130220215 130220376 -19296661 + ID_B1 SINE B4 63 224 0 3 1578 546 16 0 0 chr6 130220730 130220793 -19296244 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1578 251 224 13 26 chr6 130220838 130220916 -19296121 + T-rich Low_complexity Low_complexity 1 77 0 3 1578 1519 323 81 26 chr6 130221114 130221890 -19295147 + Lx8 LINE L1 6240 7058 -415 3 1578 336 339 31 8 chr6 130221931 130222059 -19294978 + Lx8 LINE L1 7187 7317 -156 3 1578 270 156 34 0 chr6 130223082 130223151 -19293886 - L1_Mur2 LINE L1 -4442 1435 1365 3 1578 5754 219 38 7 chr6 130223148 130224788 -19292249 + Lx4A LINE L1 5297 7001 -57 3 1578 836 25 16 16 chr6 130224813 130224934 -19292103 + (CTA)n Simple_repeat Simple_repeat 1 121 0 3 1578 28 0 0 0 chr6 130224946 130224974 -19292063 + AT_rich Low_complexity Low_complexity 1 28 0 3 1578 227 232 69 42 chr6 130225550 130225622 -19291415 - Charlie1b DNA MER1_type -368 155 82 3 1578 313 295 35 28 chr6 130226053 130226197 -19290840 + L1M3 LINE L1 5685 5829 -342 3 1578 267 259 36 36 chr6 130226291 130226375 -19290662 + B1_Mur1 SINE Alu 66 149 0 3 1578 887 161 0 0 chr6 130226701 130226844 -19290193 + B1_Mus2 SINE Alu 2 144 -3 3 1578 494 54 14 0 chr6 130226844 130226918 -19290119 + (GA)n Simple_repeat Simple_repeat 1 75 0 3 1578 4427 69 29 2 chr6 130227328 130227923 -19289114 - L1_Mus2 LINE L1 -1 6565 5955 3 1578 415 21 0 0 chr6 130228519 130228567 -19288470 - L1Md_T LINE L1 -481 6101 6054 3 1578 4096 43 0 0 chr6 130228567 130229105 -19287932 + L1Md_T LINE L1 6095 6582 0 3 1578 22 0 0 0 chr6 130230446 130230468 -19286569 + AT_rich Low_complexity Low_complexity 1 22 0 3 1578 24 32 0 0 chr6 130231580 130231611 -19285426 + AT_rich Low_complexity Low_complexity 1 31 0 3 1578 22 56 0 0 chr6 130231762 130231798 -19285239 + AT_rich Low_complexity Low_complexity 1 36 0 3 1578 28 48 0 0 chr6 130232360 130232402 -19284635 + AT_rich Low_complexity Low_complexity 1 42 0 3 1578 457 263 42 32 chr6 130232575 130232791 -19284246 + Lx9 LINE L1 5810 6027 -1617 3 1578 200 64 41 41 chr6 130234254 130234303 -19282734 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 3 1578 486 0 0 0 chr6 130234453 130234507 -19282530 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1578 1619 218 174 11 chr6 130234834 130235293 -19281744 + RMER5 LTR ERV1 1 534 0 3 1578 261 218 0 0 chr6 130235447 130235525 -19281512 + (TAA)n Simple_repeat Simple_repeat 3 80 0 3 1578 378 0 0 0 chr6 130235779 130235821 -19281216 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1578 409 274 14 105 chr6 130235835 130235978 -19281059 - RSINE1 SINE B4 -10 155 26 3 1578 226 205 0 0 chr6 130235980 130236019 -19281018 + polypyrimidine Low_complexity Low_complexity 3 41 0 3 1578 624 70 0 0 chr6 130236281 130236367 -19280670 + (CA)n Simple_repeat Simple_repeat 1 86 0 3 1578 360 280 16 78 chr6 130236777 130236905 -19280132 - PB1D9 SINE Alu 0 120 1 3 1578 196 369 60 51 chr6 130237470 130237587 -19279450 + L2b LINE L2 3238 3355 -20 3 1578 201 94 0 0 chr6 130237624 130237656 -19279381 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1578 234 192 0 0 chr6 130238003 130238055 -19278982 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1578 1113 178 0 18 chr6 130238788 130239005 -19278032 + L1_Mus3 LINE L1 6419 6631 -7 3 1578 262 374 22 36 chr6 130239244 130239466 -19277571 + Lx8 LINE L1 7057 7275 -198 3 1578 232 231 0 37 chr6 130239853 130239907 -19277130 - MLT1A1 LTR MaLR -8 400 349 3 1578 1115 79 6 0 chr6 130240015 130240192 -19276845 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 3 1578 447 19 0 0 chr6 130240205 130240257 -19276780 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 3 1578 938 140 6 0 chr6 130240257 130240436 -19276601 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1578 536 306 201 14 chr6 130240469 130240748 -19276289 + MTC LTR MaLR 37 367 -54 3 1578 672 93 17 17 chr6 130240760 130240880 -19276157 + (GAAA)n Simple_repeat Simple_repeat 3 122 0 3 1578 216 255 0 0 chr6 130241913 130241960 -19275077 + PB1D10 SINE Alu 45 91 -26 3 1578 330 395 26 0 chr6 130242149 130242301 -19274736 + ID_B1 SINE B4 63 218 -6 3 1578 915 138 14 0 chr6 130242805 130242950 -19274087 + B1_Mus1 SINE Alu 2 148 0 3 1578 589 207 0 26 chr6 130243190 130243304 -19273733 - MTC LTR MaLR 0 421 311 3 1578 274 152 203 0 chr6 130243298 130243357 -19273680 - MTC LTR MaLR -342 79 9 3 1578 201 121 0 0 chr6 130243709 130243742 -19273295 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 1578 34 24 0 0 chr6 130244479 130244520 -19272517 + AT_rich Low_complexity Low_complexity 1 41 0 3 1578 192 97 0 0 chr6 130244786 130244817 -19272220 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 3 1578 231 262 0 0 chr6 130244826 130244906 -19272131 + T-rich Low_complexity Low_complexity 1 80 0 3 1578 1992 178 70 5 chr6 130245037 130245438 -19271599 + Lx3B LINE L1 6542 6968 -5 3 1578 959 0 0 9 chr6 130245452 130245564 -19271473 + (GAAA)n Simple_repeat Simple_repeat 4 114 0 3 1578 342 0 0 0 chr6 130245574 130245612 -19271425 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 1578 905 359 47 26 chr6 130245640 130246130 -19270907 + Lx8 LINE L1 6239 6738 -735 3 1578 759 274 47 43 chr6 130247641 130247942 -19269095 + Lx8 LINE L1 6761 7062 -411 3 1578 262 365 21 0 chr6 130247996 130248092 -19268945 + Lx8 LINE L1 7200 7297 -176 3 1578 405 0 0 0 chr6 130249476 130249521 -19267516 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1578 381 58 0 0 chr6 130249522 130249574 -19267463 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1578 3451 159 15 6 chr6 130249575 130250250 -19266787 - L1_Mur2 LINE L1 -3829 2048 1368 3 1578 1667 178 25 0 chr6 130250251 130250565 -19266472 + L1_Mur2 LINE L1 5298 5619 -258 3 1578 239 320 10 0 chr6 130251466 130251569 -19265468 - L1M2 LINE L1 -462 5829 5726 3 1578 900 121 7 0 chr6 130251584 130251733 -19265304 + L1_Mus2 LINE L1 6417 6566 0 3 1578 269 309 62 0 chr6 130251745 130251826 -19265211 - ID_B1 SINE B4 -15 209 124 3 1578 558 0 0 0 chr6 130252680 130252742 -19264295 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1578 219 88 0 0 chr6 130252747 130252781 -19264256 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1578 941 110 7 14 chr6 130255237 130255385 -19261652 + B1_Mm SINE Alu 1 147 0 3 1578 1050 82 0 0 chr6 130255450 130255596 -19261441 + (TTTTC)n Simple_repeat Simple_repeat 4 149 0 3 1578 913 150 0 0 chr6 130255616 130255756 -19261281 - B1_Mus1 SINE Alu -8 140 1 3 1578 504 0 0 0 chr6 130255888 130255944 -19261093 + (CTA)n Simple_repeat Simple_repeat 1 56 0 3 1578 1179 121 0 16 chr6 130256684 130256877 -19260160 - L1Md_F2 LINE L1 0 6582 6393 3 1578 435 253 160 11 chr6 130257293 130257481 -19259556 + Lx9 LINE L1 5808 6023 -1621 3 1578 299 340 83 28 chr6 130257861 130258006 -19259031 - RSINE1 SINE B4 -7 158 6 3 1578 217 347 13 26 chr6 130258868 130258945 -19258092 - ID4 SINE ID -7 76 1 3 1578 261 246 0 42 chr6 130258991 130259063 -19257974 - PB1D10 SINE Alu -2 115 47 3 1578 1136 234 138 6 chr6 130259402 130259728 -19257309 + RMER5 LTR ERV1 162 530 -4 3 1578 252 212 0 0 chr6 130259885 130259951 -19257086 + (TAA)n Simple_repeat Simple_repeat 1 66 0 4 1578 296 336 38 57 chr6 130260479 130260637 -19256400 - RSINE1 SINE B4 0 165 11 4 1578 641 139 6 48 chr6 130260860 130261026 -19256011 + (CA)n Simple_repeat Simple_repeat 2 160 0 4 1578 566 266 7 41 chr6 130261420 130261565 -19255472 - B1_Mur1 SINE Alu 0 149 10 4 1578 1194 90 36 21 chr6 130262187 130262380 -19254657 + L1_Mus2 LINE L1 6353 6548 -18 4 1578 5959 119 24 0 chr6 130262380 130263310 -19253727 - L1_Mus1 LINE L1 -166 5717 4766 4 1578 5487 91 32 10 chr6 130263310 130263960 -19253077 + L1_Mus1 LINE L1 5742 6391 -176 4 1578 2610 83 11 35 chr6 130263960 130264334 -19252703 - RLTR10B2 LTR ERVK 0 365 1 4 1578 5487 91 32 10 chr6 130264334 130264524 -19252513 + L1_Mus1 LINE L1 6392 6567 0 4 1578 917 137 0 6 chr6 130264531 130264693 -19252344 + L1_Mus2 LINE L1 6405 6565 -1 4 1578 39 0 0 0 chr6 130264697 130264736 -19252301 + AT_rich Low_complexity Low_complexity 1 39 0 4 1578 22 35 0 0 chr6 130265161 130265190 -19251847 + AT_rich Low_complexity Low_complexity 1 29 0 4 1578 636 26 0 0 chr6 130265200 130265278 -19251759 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 1578 4632 151 12 4 chr6 130266162 130267117 -19249920 - L1_Mus3 LINE L1 -662 5976 5011 4 1578 498 208 10 0 chr6 130267272 130267373 -19249664 - Lx2 LINE L1 -778 6280 6179 4 1578 4702 179 44 31 chr6 130267572 130267884 -19249153 + Lx2 LINE L1 6006 6331 -666 4 1578 2579 153 5 16 chr6 130267884 130268323 -19248714 - RLTR10C LTR ERVK -2 434 1 4 1578 4702 179 44 31 chr6 130268323 130268988 -19248049 + Lx2 LINE L1 6332 6996 -1 4 1578 295 270 69 43 chr6 130269026 130269142 -19247895 - Lx5 LINE L1 -136 6914 6796 4 1578 634 263 56 40 chr6 130269156 130269354 -19247683 - RMER17B LTR ERVK 0 958 758 4 1578 3549 240 43 23 chr6 130269355 130270313 -19246724 - Lx5 LINE L1 -461 6589 5613 4 1578 2221 185 110 46 chr6 130270310 130270902 -19246135 - Lx2 LINE L1 -845 6152 5527 4 1578 468 63 16 0 chr6 130270902 130270965 -19246072 + U6 snRNA snRNA 9 72 -35 4 1578 482 225 82 16 chr6 130271045 130271167 -19245870 + B1_Mur3 SINE Alu 19 148 -1 4 1578 4409 14 0 0 chr6 130271420 130271913 -19245124 + MT2_Mm LTR ERVL 1 493 0 4 1578 5771 61 16 0 chr6 130272344 130273086 -19243951 - L1Md_F3 LINE L1 -15 6569 5816 4 1578 845 149 0 0 chr6 130273100 130273234 -19243803 + B1_Mus1 SINE Alu 2 135 -13 4 1578 261 83 0 0 chr6 130273234 130273270 -19243767 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1578 22 0 0 0 chr6 130274438 130274460 -19242577 + AT_rich Low_complexity Low_complexity 1 22 0 4 1578 500 325 12 6 chr6 130274610 130274771 -19242266 + ID_B1 SINE B4 63 224 0 4 1578 450 0 0 0 chr6 130275124 130275174 -19241863 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1578 236 183 40 40 chr6 130275214 130275288 -19241749 + T-rich Low_complexity Low_complexity 2 75 0 4 1578 1566 319 82 27 chr6 130275521 130276297 -19240740 + Lx8 LINE L1 6240 7058 -415 4 1578 323 325 39 16 chr6 130276338 130276466 -19240571 + Lx8 LINE L1 7187 7317 -156 4 1578 301 123 35 0 chr6 130277489 130277546 -19239491 - L1_Mur2 LINE L1 -4442 1435 1377 4 1578 5758 216 36 4 chr6 130277555 130279195 -19237842 + Lx4A LINE L1 5297 7001 -57 4 1578 587 22 22 22 chr6 130279220 130279311 -19237726 + (CTA)n Simple_repeat Simple_repeat 1 91 0 4 1578 27 0 0 0 chr6 130279321 130279348 -19237689 + AT_rich Low_complexity Low_complexity 1 27 0 4 1578 227 232 69 42 chr6 130279924 130279996 -19237041 - Charlie1b DNA MER1_type -368 155 82 4 1578 326 295 35 28 chr6 130280424 130280568 -19236469 + L1MA10 LINE L1 5685 5829 -342 4 1578 260 259 36 36 chr6 130280662 130280746 -19236291 + B1F SINE Alu 66 149 0 4 1578 329 309 109 46 chr6 130280776 130281071 -19235966 + L1MA10 LINE L1 5857 6177 -157 4 1578 838 174 0 0 chr6 130281071 130281215 -19235822 + B1_Mus2 SINE Alu 2 145 -2 4 1578 924 35 0 0 chr6 130281215 130281331 -19235706 + (GA)n Simple_repeat Simple_repeat 2 117 0 4 1578 329 309 109 46 chr6 130281331 130281448 -19235589 + L1MA10 LINE L1 6178 6295 -39 4 1578 285 276 78 95 chr6 130281508 130281624 -19235413 - ID_B1 SINE B4 -6 218 105 4 1578 4429 82 7 3 chr6 130281773 130282382 -19234655 - L1_Mus2 LINE L1 -1 6565 5955 4 1578 21 0 0 0 chr6 130284965 130284986 -19232051 + AT_rich Low_complexity Low_complexity 1 21 0 4 1579 27 62 0 0 chr6 130285627 130285675 -19231362 + AT_rich Low_complexity Low_complexity 1 48 0 4 1579 23 92 0 0 chr6 130286223 130286288 -19230749 + AT_rich Low_complexity Low_complexity 1 65 0 4 1579 344 273 58 34 chr6 130286460 130286665 -19230372 + Lx9 LINE L1 5809 6018 -1626 4 1579 224 403 0 0 chr6 130288052 130288129 -19228908 - ID4 SINE ID -2 81 5 4 1579 246 148 0 0 chr6 130288135 130288189 -19228848 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 4 1579 284 356 0 0 chr6 130288217 130288307 -19228730 - PB1D10 SINE Alu -21 96 7 4 1579 504 0 0 0 chr6 130288346 130288402 -19228635 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1579 366 23 0 0 chr6 130288402 130288444 -19228593 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1579 1490 234 164 13 chr6 130288764 130289228 -19227809 + RMER5 LTR ERV1 1 534 0 4 1579 402 152 21 11 chr6 130289354 130289447 -19227590 + (TAA)n Simple_repeat Simple_repeat 1 94 0 4 1579 414 0 0 0 chr6 130289702 130289748 -19227289 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1579 431 275 14 109 chr6 130289759 130289906 -19227131 - RSINE1 SINE B4 -7 158 26 4 1579 405 0 0 0 chr6 130290182 130290227 -19226810 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1579 300 27 0 0 chr6 130290226 130290263 -19226774 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1579 359 111 0 36 chr6 130290268 130290324 -19226713 + HAL1-3A_ME LINE L1 1976 2029 -829 4 1579 333 269 8 70 chr6 130290711 130290839 -19226198 - PB1D9 SINE Alu 0 120 1 4 1579 213 39 0 0 chr6 130291941 130291967 -19225070 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1579 443 279 0 0 chr6 130293562 130293666 -19223371 - Lx4A LINE L1 -776 6282 6179 4 1579 6189 157 15 7 chr6 130293733 130295137 -19221900 + L1_Mus3 LINE L1 5218 6629 -9 4 1579 21 0 0 0 chr6 130295137 130295158 -19221879 + AT_rich Low_complexity Low_complexity 1 21 0 4 1579 328 250 0 0 chr6 130295163 130295231 -19221806 + B1F1 SINE Alu 77 144 -5 4 1579 280 374 22 36 chr6 130295379 130295601 -19221436 + Lx8 LINE L1 7057 7275 -198 4 1579 517 93 10 20 chr6 130296125 130296224 -19220813 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 4 1579 1666 242 25 8 chr6 130296653 130297049 -19219988 - MTC LTR MaLR -18 403 1 4 1579 7745 48 4 4 chr6 130297083 130298201 -19218836 - L1Md_F2 LINE L1 -1 6581 5465 4 1579 30 27 0 0 chr6 130298521 130298558 -19218479 + AT_rich Low_complexity Low_complexity 1 37 0 4 1579 1142 55 7 0 chr6 130298910 130299056 -19217981 + B1_Mm SINE Alu 1 147 0 4 1579 252 86 0 0 chr6 130299056 130299091 -19217946 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1579 405 0 0 0 chr6 130299744 130299789 -19217248 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1579 600 50 0 0 chr6 130299789 130299868 -19217169 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1579 2129 170 7 10 chr6 130302168 130302578 -19214459 - L1_Mur2 LINE L1 -1043 4843 4435 4 1579 4265 229 13 22 chr6 130302577 130303530 -19213507 + Lx3C LINE L1 6026 6969 -7 4 1579 28 48 0 0 chr6 130303536 130303578 -19213459 + AT_rich Low_complexity Low_complexity 1 42 0 4 1579 207 0 0 0 chr6 130303924 130303947 -19213090 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1579 3656 186 41 15 chr6 130303994 130304745 -19212292 + Lx LINE L1 5884 6654 0 4 1579 500 216 26 0 chr6 130304789 130304905 -19212132 - ORR1A4-int LTR MaLR -1844 119 1 4 1579 1073 233 35 62 chr6 130304905 130305243 -19211794 - ORR1A4 LTR MaLR 0 329 1 4 1579 956 313 62 48 chr6 130305253 130305733 -19211304 + Lx8 LINE L1 6829 7315 -158 4 1579 276 330 109 69 chr6 130306224 130306527 -19210510 - RMER13A LTR ERVK -362 498 184 4 1579 472 225 58 7 chr6 130306527 130306666 -19210371 - L1_Mur2 LINE L1 -2375 3502 3357 4 1579 4455 170 24 24 chr6 130306666 130307641 -19209396 - RLTR13A LTR ERVK 0 958 11 4 1579 301 128 0 0 chr6 130307641 130307688 -19209349 - L1_Mur2 LINE L1 -2534 3343 3297 4 1579 2752 179 192 36 chr6 130307687 130308435 -19208602 + L1_Mur1 LINE L1 48 912 -6070 4 1579 7077 182 83 4 chr6 130308433 130309448 -19207589 - L1_Mur2 LINE L1 -2583 3297 2053 4 1579 414 0 0 0 chr6 130309448 130309494 -19207543 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1579 7077 159 55 4 chr6 130309494 130310271 -19206766 - L1_Mur2 LINE L1 -3825 2052 1241 4 1579 742 259 13 85 chr6 130310310 130310534 -19206503 - L1_Mur2 LINE L1 -6229 857 650 4 1579 10548 151 30 13 chr6 130310581 130313324 -19203713 + L1VL4 LINE L1 47 2835 -724 4 1579 739 161 13 6 chr6 130313326 130313482 -19203555 + CT-rich Low_complexity Low_complexity 1 157 0 4 1579 457 266 176 56 chr6 130313482 130313789 -19203248 + MTB LTR MaLR 13 346 -54 4 1579 825 68 30 0 chr6 130313793 130313926 -19203111 + (GAAA)n Simple_repeat Simple_repeat 2 138 0 4 1579 22 35 0 0 chr6 130314881 130314910 -19202127 + AT_rich Low_complexity Low_complexity 1 29 0 4 1579 233 220 0 39 chr6 130314949 130315001 -19202036 + PB1D10 SINE Alu 46 95 -22 4 1579 328 336 37 7 chr6 130315207 130315342 -19201695 + ID_B1 SINE B4 86 224 0 4 1579 927 150 0 0 chr6 130315835 130315982 -19201055 + B1_Mus1 SINE Alu 2 148 0 4 1579 515 234 0 26 chr6 130316227 130316341 -19200696 - MTC LTR MaLR 0 421 311 4 1579 239 197 182 0 chr6 130316344 130316410 -19200627 - MTC LTR MaLR -335 86 9 4 1579 180 152 0 0 chr6 130316768 130316801 -19200236 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4 1579 2846 226 30 21 chr6 130317241 130317905 -19199132 + Lx LINE L1 5979 6648 -6 4 1579 30 27 0 0 chr6 130319350 130319387 -19197650 + AT_rich Low_complexity Low_complexity 1 37 0 4 1579 237 33 0 0 chr6 130319714 130319744 -19197293 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1579 229 224 19 48 chr6 130319766 130319869 -19197168 + (TTTG)n Simple_repeat Simple_repeat 2 101 0 4 1579 1973 168 96 10 chr6 130320007 130320404 -19196633 + Lx3B LINE L1 6541 6971 -2 4 1579 594 103 0 0 chr6 130320416 130320503 -19196534 + (GA)n Simple_repeat Simple_repeat 2 88 0 4 1579 988 335 50 31 chr6 130320534 130321051 -19195986 + Lx8 LINE L1 6239 6765 -708 4 1579 27 62 0 0 chr6 130322440 130322488 -19194549 + AT_rich Low_complexity Low_complexity 1 48 0 4 1579 21 36 0 0 chr6 130323533 130323561 -19193476 + AT_rich Low_complexity Low_complexity 1 28 0 4 1579 423 0 0 0 chr6 130323589 130323636 -19193401 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1579 258 32 0 0 chr6 130323636 130323666 -19193371 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1579 3159 176 22 0 chr6 130323668 130324334 -19192703 - L1_Mur2 LINE L1 -3829 2048 1368 5 1579 1552 174 27 0 chr6 130324341 130324635 -19192402 + L1_Mur2 LINE L1 5318 5619 -258 5 1579 216 0 0 0 chr6 130324705 130324729 -19192308 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1579 509 318 85 48 chr6 130325536 130325679 -19191358 + L1MA10 LINE L1 5685 5829 -505 5 1579 390 269 0 94 chr6 130325679 130325839 -19191198 + B1F SINE Alu 1 145 -4 5 1579 509 318 85 48 chr6 130325839 130326282 -19190755 + L1MA10 LINE L1 5830 6293 -41 5 1579 315 0 0 0 chr6 130326354 130326389 -19190648 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1579 929 136 0 0 chr6 130326396 130326536 -19190501 - B1_Mus1 SINE Alu -3 145 6 5 1579 483 18 0 0 chr6 130327139 130327195 -19189842 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1579 462 61 0 0 chr6 130327195 130327260 -19189777 + (CA)n Simple_repeat Simple_repeat 1 66 0 5 1579 206 272 109 0 chr6 130327370 130327462 -19189575 - L3 LINE CR1 -3554 935 834 5 1579 1912 131 19 3 chr6 130328653 130328968 -19188069 - L1_Mus3 LINE L1 -2 6636 6317 5 1579 266 104 65 0 chr6 130329108 130329185 -19187852 + A-rich Low_complexity Low_complexity 2 83 0 5 1579 23 68 0 0 chr6 130330494 130330538 -19186499 + AT_rich Low_complexity Low_complexity 1 44 0 5 1579 566 25 0 59 chr6 130330939 130331024 -19186013 - L1Md_T LINE L1 0 6582 6503 5 1579 371 303 35 10 chr6 130331354 130331551 -19185486 + Lx9 LINE L1 5807 6008 -1636 5 1579 359 250 54 70 chr6 130331993 130332122 -19184915 - RSINE1 SINE B4 -23 142 16 5 1579 262 338 0 13 chr6 130332956 130333034 -19184003 - ID4 SINE ID -2 81 5 5 1579 204 86 57 0 chr6 130333037 130333072 -19183965 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 5 1579 211 383 0 70 chr6 130333079 130333194 -19183843 - PB1D10 SINE Alu -2 115 9 5 1579 1615 217 163 13 chr6 130333587 130334041 -19182996 + RMER5 LTR ERV1 13 534 0 5 1579 280 240 13 0 chr6 130334181 130334256 -19182781 + (TAA)n Simple_repeat Simple_repeat 3 78 0 5 1579 423 0 0 0 chr6 130334498 130334545 -19182492 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1579 320 290 20 61 chr6 130334623 130334722 -19182315 - RSINE1 SINE B4 -60 105 11 5 1579 441 0 0 0 chr6 130334933 130334982 -19182055 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1579 383 252 8 70 chr6 130335393 130335521 -19181516 - PB1D9 SINE Alu 0 120 1 5 1579 564 192 12 18 chr6 130336590 130336754 -19180283 + (CATATA)n Simple_repeat Simple_repeat 6 168 0 5 1579 25 65 0 0 chr6 130338045 130338091 -19178946 + AT_rich Low_complexity Low_complexity 1 46 0 5 1579 40 0 0 0 chr6 130338349 130338389 -19178648 + AT_rich Low_complexity Low_complexity 1 40 0 5 1579 21419 119 32 6 chr6 130338465 130341961 -19175076 - L1_Mus1 LINE L1 0 6567 3003 5 1579 180 0 0 0 chr6 130341961 130341981 -19175056 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5 1579 21419 168 62 12 chr6 130341981 130344093 -19172944 - L1_Mus1 LINE L1 -2881 3002 586 5 1579 319 321 60 15 chr6 130344560 130344586 -19172451 + ID_B1 SINE B4 60 110 -182 5 1579 335 309 0 0 chr6 130344586 130344667 -19172370 + PB1D10 SINE Alu 4 84 -33 5 1579 319 321 60 15 chr6 130344667 130344726 -19172311 + ID_B1 SINE B4 111 231 -61 5 1579 2685 83 3 29 chr6 130344992 130345377 -19171660 + L1_Mus1 LINE L1 6121 6495 -72 5 1579 220 321 0 0 chr6 130345530 130345583 -19171454 - PB1D10 SINE Alu -13 104 52 5 1579 447 84 28 14 chr6 130345590 130345662 -19171375 - L1_Mur2 LINE L1 -4440 1437 1365 5 1579 2646 176 19 95 chr6 130345659 130345969 -19171068 + Lx4A LINE L1 5297 5586 -291 5 1579 1068 109 0 0 chr6 130345969 130346116 -19170921 + B1_Mus1 SINE Alu 2 148 0 5 1579 5566 196 122 27 chr6 130346116 130347422 -19169615 + Lx4A LINE L1 5587 7055 -3 5 1579 1858 163 26 3 chr6 130348416 130348718 -19168319 + RLTR27 LTR ERVK 1 309 0 5 1579 356 65 0 0 chr6 130348730 130348776 -19168261 + RLTR10-int LTR ERVK 222 267 -7314 5 1579 357 196 0 64 chr6 130348933 130349042 -19167995 + RLTR10-int LTR ERVK 751 852 -1135 5 1579 229 279 0 0 chr6 130349043 130349104 -19167933 + A-rich Low_complexity Low_complexity 5 65 0 5 1579 473 339 17 43 chr6 130349417 130349765 -19167272 + MMERVK10C-int LTR ERVK 704 1042 -5500 5 1579 3838 298 17 32 chr6 130349791 130351581 -19165456 + MMERVK10C-int LTR ERVK 1596 3552 -4665 5 1579 339 330 28 17 chr6 130352078 130352257 -19164780 + MMERVK10C-int LTR ERVK 6900 7080 -501 5 1579 1430 168 0 23 chr6 130352387 130352649 -19164388 + MMERVK10C-int LTR ERVK 7326 7581 0 5 1579 2148 129 0 0 chr6 130352649 130352958 -19164079 + RLTR27 LTR ERVK 1 309 0 5 1579 438 284 4 35 chr6 130353273 130353454 -19163583 + B1F SINE Alu 1 145 -4 5 1579 366 326 99 23 chr6 130353464 130353900 -19163137 + L1MA10 LINE L1 5827 6295 -39 5 1579 355 311 49 25 chr6 130353985 130354107 -19162930 - B1F SINE Alu -1 148 24 5 1579 21 57 0 0 chr6 130354217 130354252 -19162785 + AT_rich Low_complexity Low_complexity 1 35 0 5 1579 450 0 0 0 chr6 130354565 130354615 -19162422 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1579 29 0 0 0 chr6 130355544 130355573 -19161464 + AT_rich Low_complexity Low_complexity 1 29 0 5 1579 894 152 0 6 chr6 130355736 130355902 -19161135 - Lx LINE L1 -2 6652 6488 5 1579 28 0 0 0 chr6 130357417 130357445 -19159592 + AT_rich Low_complexity Low_complexity 1 28 0 5 1579 214 182 0 0 chr6 130357566 130357610 -19159427 + T-rich Low_complexity Low_complexity 1 44 0 5 1579 31 58 0 0 chr6 130357774 130357826 -19159211 + AT_rich Low_complexity Low_complexity 1 52 0 5 1579 331 262 112 0 chr6 130358619 130358726 -19158311 + Lx9 LINE L1 5798 5916 -1728 5 1579 222 37 0 0 chr6 130360129 130360156 -19156881 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1579 299 22 0 42 chr6 130360156 130360204 -19156833 - L1_Mm LINE L1 -852 5031 4986 5 1579 18420 76 3 3 chr6 130360205 130362057 -19154980 - L1Md_F2 LINE L1 -8 6574 4734 5 1579 213 39 0 0 chr6 130362057 130362083 -19154954 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1579 18420 82 7 6 chr6 130362083 130363471 -19153566 - L1Md_F2 LINE L1 -1150 4733 3334 5 1579 5763 126 16 19 chr6 130363471 130365125 -19151912 - L1Md_F2 LINE L1 -3824 2059 413 5 1579 22 35 0 0 chr6 130365128 130365157 -19151880 + AT_rich Low_complexity Low_complexity 1 29 0 5 1579 4046 183 18 8 chr6 130365158 130365929 -19151108 - Lx2 LINE L1 -2 6995 6217 5 1579 212 139 47 0 chr6 130366041 130366084 -19150953 + T-rich Low_complexity Low_complexity 1 45 0 5 1579 22 70 0 0 chr6 130366091 130366134 -19150903 + AT_rich Low_complexity Low_complexity 1 43 0 5 1579 1411 231 186 18 chr6 130366491 130366726 -19150311 + RMER5 LTR ERV1 13 294 -240 5 1579 3451 56 7 9 chr6 130366726 130367177 -19149860 + L1Md_F2 LINE L1 6132 6581 -1 5 1579 1411 231 186 18 chr6 130367177 130367382 -19149655 + RMER5 LTR ERV1 295 527 -7 5 1579 294 259 0 0 chr6 130367551 130367632 -19149405 + (TAA)n Simple_repeat Simple_repeat 3 83 0 5 1579 897 28 0 0 chr6 130368165 130368273 -19148764 + (CA)n Simple_repeat Simple_repeat 1 108 0 5 1579 514 292 14 7 chr6 130368667 130368812 -19148225 - B1_Mur1 SINE Alu -3 146 1 5 1579 252 0 0 0 chr6 130369055 130369083 -19147954 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1579 180 97 0 0 chr6 130369577 130369608 -19147429 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1579 529 216 0 10 chr6 130370140 130370243 -19146794 - Lx2 LINE L1 -778 6280 6179 5 1579 215 188 62 0 chr6 130370393 130370457 -19146580 + (TTTA)n Simple_repeat Simple_repeat 1 68 0 5 1579 786 263 68 136 chr6 130370457 130370548 -19146489 - Lx5 LINE L1 -43 7007 6918 5 1579 5389 159 30 13 chr6 130370548 130371524 -19145513 + Lx2 LINE L1 6005 6996 -1 5 1579 786 263 68 136 chr6 130371524 130371784 -19145253 - Lx5 LINE L1 -133 6917 6680 5 1579 3710 229 7 13 chr6 130371771 130372610 -19144427 - Lx5 LINE L1 -599 6451 5618 5 1579 3318 160 7 0 chr6 130372611 130373227 -19143810 - Lx2 LINE L1 -845 6152 5535 5 1579 367 253 13 0 chr6 130373228 130373307 -19143730 + U6 snRNA snRNA 2 81 -26 5 1579 216 0 0 0 chr6 130373360 130373384 -19143653 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1579 936 90 0 0 chr6 130373387 130373414 -19143623 + B1_Mus2 SINE Alu 13 134 -13 5 1579 280 287 8 77 chr6 130373414 130373509 -19143528 + RLTR25B LTR ERVK 441 530 -498 5 1579 254 26 53 0 chr6 130373509 130373547 -19143490 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 1579 280 287 8 77 chr6 130373547 130373568 -19143469 + RLTR25B LTR ERVK 531 549 -479 5 1579 246 262 75 108 chr6 130373577 130373697 -19143340 + MT2B LTR ERVL 155 270 -331 5 1579 611 187 40 16 chr6 130373606 130373731 -19143306 + B1_Mur3 SINE Alu 21 148 -1 5 1579 211 306 76 76 chr6 130374022 130374114 -19142923 - PB1D7 SINE Alu -20 100 9 5 1579 4452 52 0 4 chr6 130374254 130374811 -19142226 + L1Md_F2 LINE L1 6016 6570 -12 5 1579 2659 82 0 0 chr6 130376015 130376367 -19140670 + L1_Mus1 LINE L1 6216 6567 0 5 1579 250 208 21 0 chr6 130376421 130376469 -19140568 + PB1D10 SINE Alu 49 97 -20 5 1579 3307 32 0 0 chr6 130376529 130376994 -19140043 - L1Md_F2 LINE L1 -639 5943 5479 5 1579 5423 44 3 0 chr6 130376994 130377656 -19139381 + L1Md_F2 LINE L1 5907 6570 -12 5 1579 356 331 50 38 chr6 130377807 130377967 -19139070 + ID_B1 SINE B4 63 224 0 5 1579 1630 219 89 8 chr6 130378683 130379065 -19137972 - MTC LTR MaLR 0 421 9 5 1579 419 281 122 34 chr6 130379387 130379708 -19137329 + L1MB3 LINE L1 5825 6173 -10 5 1579 24 0 0 0 chr6 130380014 130380038 -19136999 + AT_rich Low_complexity Low_complexity 1 24 0 5 1579 725 188 0 7 chr6 130381010 130381165 -19135872 + (TA)n Simple_repeat Simple_repeat 2 155 0 5 1579 333 345 67 0 chr6 130381322 130381441 -19135596 + RSINE1 SINE B4 39 165 0 5 1579 24 0 0 0 chr6 130381569 130381593 -19135444 + AT_rich Low_complexity Low_complexity 1 24 0 5 1579 308 290 31 31 chr6 130383550 130383646 -19133391 + PB1D10 SINE Alu 22 117 0 5 1579 27 0 0 0 chr6 130383656 130383683 -19133354 + AT_rich Low_complexity Low_complexity 1 27 0 5 1579 213 94 0 0 chr6 130384021 130384053 -19132984 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1579 369 0 0 0 chr6 130384123 130384164 -19132873 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 5 1579 1956 296 62 34 chr6 130384325 130385127 -19131910 + Lx8 LINE L1 6240 7064 -409 5 1579 262 294 15 0 chr6 130385674 130385742 -19131295 - PB1D10 SINE Alu -3 114 46 5 1579 330 149 0 0 chr6 130385755 130385822 -19131215 - L1_Mur2 LINE L1 -4446 1431 1365 5 1579 1414 211 7 3 chr6 130385820 130386129 -19130908 + Lx4A LINE L1 5298 5607 -270 5 1579 1848 157 9 9 chr6 130386130 130386451 -19130586 + ORR1A4 LTR MaLR 1 321 -8 6 1579 4353 184 50 3 chr6 130386463 130387341 -19129696 + Lx4A LINE L1 5618 6536 -522 5 1579 5467 194 23 109 chr6 130387342 130389117 -19127920 - Lx5 LINE L1 -935 6115 4486 6 1579 336 302 82 86 chr6 130389128 130389432 -19127605 - MTC-int LTR MaLR -133 1125 823 6 1579 2734 53 0 0 chr6 130389604 130389944 -19127093 + L1Md_F2 LINE L1 5247 5586 -297 6 1579 7826 60 2 0 chr6 130389944 130390936 -19126101 + L1Md_F2 LINE L1 5587 6580 -2 6 1579 255 346 27 36 chr6 130391142 130391253 -19125784 + ID_B1 SINE B4 99 208 -16 6 1579 194 0 0 37 chr6 130391471 130391498 -19125539 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 6 1579 1359 207 16 23 chr6 130391645 130391952 -19125085 + Lx2 LINE L1 5833 6137 -860 6 1579 304 349 83 0 chr6 130392016 130392148 -19124889 + B1_Mur1 SINE Alu 5 147 -2 6 1579 714 117 0 0 chr6 130392164 130392275 -19124762 + (CATA)n Simple_repeat Simple_repeat 2 112 0 6 1579 324 216 40 26 chr6 130392338 130392414 -19124623 + B1F1 SINE Alu 67 143 -6 6 1579 1093 107 78 11 chr6 130392448 130392627 -19124410 + L1_Mus1 LINE L1 6377 6567 0 6 1579 934 264 24 38 chr6 130392658 130392949 -19124088 - Lx7 LINE L1 -215 7481 7195 6 1579 229 360 36 9 chr6 130393005 130393117 -19123920 - Lx8 LINE L1 -244 7229 7115 6 1579 1087 339 68 18 chr6 130393141 130393762 -19123275 + Lx8 LINE L1 6203 6854 -619 6 1579 234 325 25 0 chr6 130394047 130394127 -19122910 - Lx8 LINE L1 -184 7289 7208 6 1579 1829 118 28 22 chr6 130394203 130394523 -19122514 - RLTRETN_Mm LTR ERVK 0 322 1 6 1579 6758 57 1 2 chr6 130394724 130395572 -19121465 - L1Md_F2 LINE L1 -14 6568 5722 6 1579 238 223 105 57 chr6 130395639 130395848 -19121189 + Lx7 LINE L1 7474 7692 -4 6 1579 29 0 0 0 chr6 130396124 130396153 -19120884 + AT_rich Low_complexity Low_complexity 1 29 0 6 1579 5500 158 332 11 chr6 130396239 130397023 -19120014 - L1_Mur2 LINE L1 -2552 3325 2253 6 1579 318 67 0 0 chr6 130397023 130397068 -19119969 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1579 5500 158 332 11 chr6 130397068 130397889 -19119148 - L1_Mur2 LINE L1 -3625 2252 1206 6 1579 29747 61 12 1 chr6 130397864 130402454 -19114583 - L1Md_F3 LINE L1 -14 6570 1928 6 1579 798 260 0 92 chr6 130402476 130402705 -19114332 - L1_Mur2 LINE L1 -6228 858 651 6 1579 1552 179 40 0 chr6 130403804 130404106 -19112931 + L1_Mur2 LINE L1 4988 5301 -576 6 1579 743 135 7 7 chr6 130404106 130404248 -19112789 + Lx LINE L1 6511 6652 -2 6 1579 436 368 41 21 chr6 130404431 130404625 -19112412 + ID_B1 SINE B4 26 223 -1 6 1579 376 251 106 17 chr6 130404945 130405133 -19111904 + L1MD3 LINE L1 5640 5843 -2152 6 1579 1653 248 22 12 chr6 130405334 130405751 -19111286 - MTC LTR MaLR 0 421 1 6 1579 278 315 0 0 chr6 130406133 130406206 -19110831 - B1F SINE Alu -13 136 64 6 1579 321 26 0 0 chr6 130408200 130408238 -19108799 + (CAAAA)n Simple_repeat Simple_repeat 5 42 0 6 1579 260 345 35 0 chr6 130408910 130408997 -19108040 + PB1D10 SINE Alu 26 115 -2 6 1579 207 0 0 0 chr6 130409017 130409040 -19107997 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6 1579 1346 153 0 0 chr6 130409051 130409266 -19107771 - Lx2 LINE L1 -8 6989 6775 6 1579 1494 165 4 0 chr6 130409268 130409516 -19107521 - Lx2 LINE L1 -356 6641 6393 6 1579 775 346 29 23 chr6 130410108 130410457 -19106580 + Lx8 LINE L1 6240 6590 -883 6 1579 797 338 95 30 chr6 130410475 130410875 -19106162 + Lx8 LINE L1 6637 7062 -411 6 1579 408 311 19 10 chr6 130410924 130411028 -19106009 + Lx8 LINE L1 7203 7307 -166 6 1579 21 0 0 0 chr6 130411129 130411150 -19105887 + AT_rich Low_complexity Low_complexity 1 21 0 6 1579 3273 142 13 7 chr6 130411408 130411949 -19105088 + Lx LINE L1 6109 6652 -2 6 1579 1984 88 84 39 chr6 130412421 130412754 -19104283 - RLTR10B2 LTR ERVK 0 365 18 6 1579 277 0 0 0 chr6 130412768 130412804 -19104233 - RLTR10B2 LTR ERVK -256 36 1 6 1579 7491 56 0 25 chr6 130412804 130413764 -19103273 - MMERVK10C-int LTR ERVK 0 7581 6646 6 1579 2609 118 10 2 chr6 130413750 130414162 -19102875 - MMERVK10C-int LTR ERVK -1771 5810 5002 6 1579 419 294 41 41 chr6 130414172 130414392 -19102645 - MMERVK10C-int LTR ERVK -6015 1566 1347 6 1579 2410 26 123 9 chr6 130414387 130414720 -19102317 - MMERVK10C-int LTR ERVK -1074 913 553 6 1579 770 56 39 16 chr6 130414720 130414848 -19102189 + (TTTCC)n Simple_repeat Simple_repeat 3 133 0 6 1579 2028 53 11 8 chr6 130414924 130415190 -19101847 - MMERVK10C-int LTR ERVK -7314 267 1 6 1579 1998 91 84 39 chr6 130415190 130415523 -19101514 - RLTR10B2 LTR ERVK 0 365 18 6 1579 244 56 0 0 chr6 130415537 130415573 -19101464 - RLTR10B2 LTR ERVK -256 36 1 6 1579 22 0 0 0 chr6 130415613 130415635 -19101402 + AT_rich Low_complexity Low_complexity 1 22 0 6 1579 224 229 0 20 chr6 130415690 130415739 -19101298 - PB1D10 SINE Alu -21 96 49 6 1579 337 132 14 14 chr6 130415743 130415812 -19101225 - L1_Mur2 LINE L1 -4440 1437 1369 6 1579 939 208 335 3 chr6 130415811 130416139 -19100898 + L1_Mur2 LINE L1 5295 5731 -146 6 197 29752 108 12 6 chr6 130416149 130421354 -19095683 + Lx4A LINE L1 347 5737 -1321 6 1580 7349 81 1 9 chr6 130421354 130422346 -19094691 + L1Md_F2 LINE L1 5587 6570 -12 6 1580 572 169 21 84 chr6 130422346 130422439 -19094598 + Lx4A LINE L1 5738 5830 -1228 6 1580 341 224 6 93 chr6 130422416 130422598 -19094439 + Lx4A LINE L1 5972 6137 -921 6 1580 27 29 0 0 chr6 130422624 130422658 -19094379 + AT_rich Low_complexity Low_complexity 1 34 0 6 1580 1064 88 0 0 chr6 130422917 130423064 -19093973 - B1_Mm SINE Alu 0 147 1 6 1580 687 226 0 0 chr6 130423915 130424079 -19092958 + (TA)n Simple_repeat Simple_repeat 2 165 0 6 1580 226 262 0 36 chr6 130424083 130424166 -19092871 + L1M2 LINE L1 5750 5829 -462 6 1580 490 322 0 64 chr6 130424166 130424322 -19092715 + B1F SINE Alu 1 146 -3 6 1580 353 311 98 18 chr6 130424343 130424815 -19092222 + L1MA10 LINE L1 5816 6327 -7 6 1580 233 323 48 19 chr6 130424870 130425000 -19092037 - B1F SINE Alu -6 143 11 6 1580 1490 154 138 0 chr6 130427998 130428310 -19088727 - Lx3_Mus LINE L1 -872 6137 5783 6 1580 3642 179 24 9 chr6 130428317 130428984 -19088053 - Lx LINE L1 0 6654 5978 6 1580 1295 300 106 24 chr6 130428988 130429232 -19087805 + Lx4B LINE L1 5606 5857 -797 6 1580 459 0 0 0 chr6 130429232 130429283 -19087754 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1580 1829 249 74 13 chr6 130429283 130429953 -19087084 + Lx4B LINE L1 5858 7037 -21 6 1580 369 0 0 0 chr6 130429953 130429994 -19087043 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 6 1580 610 282 47 20 chr6 130430030 130430283 -19086754 + L1_Rod LINE L1 3995 4254 -1593 6 1580 222 287 17 9 chr6 130430360 130430476 -19086561 + (TA)n Simple_repeat Simple_repeat 1 117 0 6 1580 384 281 42 30 chr6 130430538 130430703 -19086334 + L1_Rod LINE L1 5052 5218 -629 6 1580 581 264 88 27 chr6 130430748 130431009 -19086028 + L1_Rod LINE L1 5370 5646 -201 6 1580 489 17 0 0 chr6 130431009 130431067 -19085970 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1580 721 228 23 22 chr6 130432173 130434552 -19082485 - MMSAT4 Satellite Satellite 0 2380 1 6 1580 5608 242 53 7 chr6 130436037 130436287 -19080750 + Lx4A LINE L1 5629 5876 -1182 6 1580 416 104 15 0 chr6 130436287 130436354 -19080683 + (TA)n Simple_repeat Simple_repeat 2 69 0 6 1580 5608 242 53 7 chr6 130436354 130437471 -19079566 + Lx4A LINE L1 5877 7057 -1 6 1580 24 53 0 0 chr6 130437472 130437510 -19079527 + AT_rich Low_complexity Low_complexity 1 38 0 6 1580 2622 35 0 0 chr6 130437576 130437892 -19079145 + L1Md_A LINE L1 6267 6582 0 6 1580 755 312 30 39 chr6 130438544 130438981 -19078056 + L1_Mur2 LINE L1 907 1339 -5747 6 1580 1089 250 17 30 chr6 130438991 130439276 -19077761 - ORR1A3 LTR MaLR -55 329 3 6 1580 744 289 4 0 chr6 130439276 130439525 -19077512 + L1_Mur2 LINE L1 5013 5262 -615 6 1580 20820 143 3 12 chr6 130439528 130443976 -19073061 + L1VL1 LINE L1 413 4819 -1064 6 1580 229 328 63 39 chr6 130444137 130444264 -19072773 + Lx7 LINE L1 6614 6743 -953 6 1580 416 177 0 30 chr6 130444264 130444363 -19072674 - Lx2B LINE L1 0 7000 6905 6 1580 2004 204 97 41 chr6 130444363 130444930 -19072107 - L1_Mur2 LINE L1 -553 5324 4726 6 1580 38145 50 13 3 chr6 130444925 130451102 -19065935 - L1Md_T LINE L1 -1 6581 381 6 1580 375 176 0 14 chr6 130451100 130451169 -19065868 - L1_Mur2 LINE L1 -1139 4738 4671 6 1580 1004 177 0 5 chr6 130451197 130451390 -19065647 + B2_Mm2 SINE B2 1 192 -3 6 1580 1610 199 51 10 chr6 130451443 130451858 -19065179 + L1_Mur1 LINE L1 4196 4627 -1259 6 1580 384 320 42 28 chr6 130451979 130452194 -19064843 + Lx7 LINE L1 6886 7103 -593 6 1580 270 206 0 0 chr6 130452403 130452471 -19064566 + GA-rich Low_complexity Low_complexity 1 68 0 6 1580 377 263 21 21 chr6 130453466 130453606 -19063431 - MurSatRep1 Unknown Unknown -1392 745 606 6 1580 23 0 0 0 chr6 130455585 130455608 -19061429 + AT_rich Low_complexity Low_complexity 1 23 0 6 1580 7936 63 2 1 chr6 130455643 130457088 -19059949 - L1Md_F2 LINE L1 0 6582 5138 6 1580 3570 57 0 0 chr6 130457088 130457529 -19059508 + L1Md_F2 LINE L1 6130 6570 -12 6 1580 18326 107 3 27 chr6 130457535 130460411 -19056626 + L1_Mm LINE L1 2456 5264 -619 6 1580 29963 100 5 4 chr6 130460412 130465326 -19051711 + L1Md_F2 LINE L1 332 5234 -649 6 1580 189 0 0 0 chr6 130465326 130465347 -19051690 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1580 29963 98 5 5 chr6 130465347 130465683 -19051354 + L1Md_F2 LINE L1 5235 5585 -298 6 1580 7211 84 3 11 chr6 130465684 130466687 -19050350 + L1Md_F2 LINE L1 5587 6581 -1 6 1580 2579 72 0 0 chr6 130466703 130467036 -19050001 + L1Md_F2 LINE L1 5252 5584 -299 6 1580 6936 98 11 3 chr6 130467038 130468024 -19049013 + L1Md_F2 LINE L1 5587 6580 -2 6 1580 325 300 119 44 chr6 130468141 130468405 -19048632 + L1_Rod LINE L1 5370 5643 -204 6 1580 519 31 0 0 chr6 130468405 130468470 -19048567 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1580 325 300 119 44 chr6 130468470 130468498 -19048539 + L1_Rod LINE L1 5644 5683 -164 6 1580 519 245 77 34 chr6 130469574 130469781 -19047256 + RLTR45 LTR ERVK 261 476 -6 6 1580 693 211 19 29 chr6 130469781 130470189 -19046848 - MMSAT4 Satellite Satellite -17 403 1 6 1580 2623 74 0 0 chr6 130470189 130470540 -19046497 + L1Md_A LINE L1 6230 6580 -2 6 1580 685 218 11 10 chr6 130470540 130471101 -19045936 - MMSAT4 Satellite Satellite -83 561 1 6 1580 21 36 0 0 chr6 130472357 130472385 -19044652 + AT_rich Low_complexity Low_complexity 1 28 0 6 1580 5429 239 55 12 chr6 130472815 130473061 -19043976 + Lx4A LINE L1 5629 5873 -1185 6 1580 513 0 0 0 chr6 130473061 130473118 -19043919 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 1580 5429 239 55 12 chr6 130473118 130474241 -19042796 + Lx4A LINE L1 5874 7056 -2 6 1580 9908 50 3 4 chr6 130474405 130476324 -19040713 - L1Md_F2 LINE L1 -1 6581 4669 6 1580 1660 39 0 0 chr6 130476323 130476531 -19040506 + L1_Mm LINE L1 4120 4327 -1556 6 1580 2211 87 29 3 chr6 130476535 130476846 -19040191 - IAPLTR2b LTR ERVK -8 319 1 6 1580 47608 70 20 23 chr6 130476846 130479759 -19037278 - IAPEz-int LTR ERVK 0 6481 3648 6 1580 1503 51 0 0 chr6 130479759 130479937 -19037100 + B2_Mm1t SINE B2 2 179 -14 6 1580 185 0 40 0 chr6 130479940 130479965 -19037072 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1580 47608 70 20 24 chr6 130479965 130483511 -19033526 - IAPEz-int LTR ERVK -2834 3647 3 6 1580 2180 109 12 6 chr6 130483511 130483835 -19033202 - IAPLTR2b LTR ERVK -1 326 1 6 1580 2419 40 93 0 chr6 130483835 130484159 -19032878 + L1_Mm LINE L1 4322 4675 -1208 6 1580 741 283 53 29 chr6 130484936 130485427 -19031610 + L1_Mur2 LINE L1 520 1016 -2524 6 1580 1036 241 4 25 chr6 130485429 130485672 -19031365 - ORR1A3 LTR MaLR -86 240 3 6 1580 816 278 4 0 chr6 130485673 130485921 -19031116 + L1_Mur2 LINE L1 5014 5262 -615 6 1580 19812 148 16 13 chr6 130485927 130490314 -19026723 + L1VL1 LINE L1 419 4819 -1064 6 1580 5344 233 30 17 chr6 130490606 130492902 -19024135 - Lx2B LINE L1 -4 6996 4658 7 1580 989 158 0 6 chr6 130492918 130493096 -19023941 + B2_Mm2 SINE B2 1 177 -18 7 1580 201 74 0 0 chr6 130493097 130493124 -19023913 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7 1580 2000 190 26 0 chr6 130493161 130493583 -19023454 + L1_Mur2 LINE L1 4185 4617 -1260 7 1580 402 360 39 20 chr6 130493711 130493966 -19023071 + Lx7 LINE L1 6889 7148 -548 7 1580 216 226 0 0 chr6 130494128 130494190 -19022847 + GA-rich Low_complexity Low_complexity 1 62 0 7 1580 316 285 21 21 chr6 130495192 130495332 -19021705 - MurSatRep1 Unknown Unknown -1392 745 606 7 1580 469 288 18 0 chr6 130495553 130495716 -19021321 + URR1B DNA MER1_type 60 225 0 7 1580 30 59 0 0 chr6 130497082 130497133 -19019904 + AT_rich Low_complexity Low_complexity 1 51 0 7 1580 378 0 0 0 chr6 130497681 130497723 -19019314 + (ATG)n Simple_repeat Simple_repeat 2 43 0 7 1580 234 0 0 0 chr6 130497723 130497749 -19019288 + (TTA)n Simple_repeat Simple_repeat 1 26 0 7 1580 1486 264 12 29 chr6 130497765 130498186 -19018851 + Lx4B LINE L1 6433 6846 -212 7 1580 549 332 21 58 chr6 130498551 130498794 -19018243 + B4A SINE B4 3 236 -56 7 1580 714 34 0 0 chr6 130499053 130499142 -19017895 + (CA)n Simple_repeat Simple_repeat 2 90 0 7 1580 436 375 29 29 chr6 130499197 130499403 -19017634 + ID_B1 SINE B4 15 220 -4 7 1580 7984 122 2 0 chr6 130500237 130501459 -19015578 - L1Md_F2 LINE L1 -722 5161 3938 1 1580 3105 80 7 2 chr6 130501456 130501880 -19015157 + L1Md_F2 LINE L1 5161 5586 -297 1 1580 6843 94 14 14 chr6 130501881 130502864 -19014173 + L1Md_F2 LINE L1 5588 6570 -12 1 1580 2598 198 17 17 chr6 130502877 130503407 -19013630 + Lx LINE L1 6106 6635 -19 2 1580 5718 66 1 0 chr6 130503876 130504605 -19012432 - L1Md_F2 LINE L1 0 6582 5853 3 1580 422 39 0 0 chr6 130504605 130504656 -19012381 + L1Md_F2 LINE L1 5812 5862 -720 3 1580 261 267 26 26 chr6 130504663 130504740 -19012297 + MTEa LTR MaLR 273 349 -30 4 1580 217 259 0 56 chr6 130505129 130505219 -19011818 + GA-rich Low_complexity Low_complexity 4 88 0 5 1580 247 243 6 134 chr6 130505342 130505499 -19011538 - Lx LINE L1 -11 6965 6829 6 1580 5149 238 17 44 chr6 130505610 130506777 -19010260 - Lx3C LINE L1 -67 6909 5775 7 1580 2834 46 3 0 chr6 130506777 130507122 -19009915 + ORR1A0 LTR MaLR 1 346 0 8 1580 13250 65 21 0 chr6 130507122 130508877 -19008160 + ORR1A0-int LTR MaLR 1 1792 0 8 1580 2802 47 12 0 chr6 130508877 130509219 -19007818 + ORR1A0 LTR MaLR 1 346 0 8 1580 5149 198 65 32 chr6 130509219 130509852 -19007185 - Lx3C LINE L1 -109 5777 5122 7 1580 290 230 14 0 chr6 130509865 130509969 -19007068 + (CA)n Simple_repeat Simple_repeat 1 105 0 9 1580 516 192 0 0 chr6 130509970 130510074 -19006963 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 1580 477 346 58 10 chr6 130510090 130510297 -19006740 + B4 SINE B4 24 240 -52 1 1580 454 330 294 34 chr6 130510703 130511007 -19006030 - RMER15 LTR ERVL -155 420 38 1 1580 2550 190 10 18 chr6 130511105 130511613 -19005424 - Lx LINE L1 0 6654 6151 6 1580 990 288 118 3 chr6 130511659 130511980 -19005057 + ORR1D1 LTR MaLR 2 359 -15 1 1580 326 152 0 0 chr6 130512257 130512323 -19004714 - L1_Mur1 LINE L1 -2121 3765 3700 1 1580 1067 261 3 3 chr6 130512325 130512609 -19004428 + L1_Mur2 LINE L1 5497 5780 -97 1 1580 335 371 35 35 chr6 130513685 130513858 -19003179 - B4 SINE B4 -109 183 11 1 1580 2347 161 9 16 chr6 130513897 130513915 -19003122 - Lx3_Mus LINE L1 -7 7002 6990 1 1580 282 29 0 0 chr6 130513915 130513950 -19003087 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 1 1580 2347 161 9 16 chr6 130513950 130514366 -19002671 - Lx3_Mus LINE L1 -20 6989 6571 1 1580 24 32 0 0 chr6 130514366 130514397 -19002640 + AT_rich Low_complexity Low_complexity 1 31 0 1 1580 5536 106 1 6 chr6 130514397 130515196 -19001841 - L1Md_F2 LINE L1 -13 6569 5775 2 1580 5826 128 19 6 chr6 130515196 130516211 -19000826 - Lx3_Mus LINE L1 -444 6565 5540 1 1580 791 310 83 28 chr6 130516923 130517391 -18999646 + Lx8 LINE L1 6315 6808 -665 2 1580 978 228 42 12 chr6 130517399 130517639 -18999398 - ORR1A3 LTR MaLR -3 323 77 2 1580 985 145 7 14 chr6 130519745 130520039 -18996998 + GA-rich Low_complexity Low_complexity 1 292 0 2 1580 210 128 0 0 chr6 130520414 130520453 -18996584 + (TTA)n Simple_repeat Simple_repeat 1 39 0 2 1580 1020 202 25 13 chr6 130520457 130520693 -18996344 - Lx LINE L1 -3 6970 6732 2 1580 432 282 132 47 chr6 130520890 130521147 -18995890 - RMER13A LTR ERVK -398 462 184 2 1580 2061 188 19 21 chr6 130521148 130521643 -18995394 - L1_Mur2 LINE L1 -2377 3500 3003 2 1580 240 35 0 0 chr6 130521643 130521672 -18995365 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1580 982 111 0 0 chr6 130521673 130521808 -18995229 - B1_Mus2 SINE Alu -12 135 1 2 1580 2061 188 19 21 chr6 130521808 130521838 -18995199 - L1_Mur2 LINE L1 -2875 3002 2974 2 1580 5080 151 54 3 chr6 130521824 130522728 -18994309 - Lx3_Mus LINE L1 -271 6738 5789 3 1580 3207 194 25 14 chr6 130522740 130523407 -18993630 - Lx LINE L1 -2 6652 5978 2 1580 1754 264 86 24 chr6 130523408 130524357 -18992680 + Lx4B LINE L1 5598 7052 -6 3 1580 577 269 55 32 chr6 130524397 130524650 -18992387 + L1_Rod LINE L1 3996 4254 -1593 3 1580 300 258 18 23 chr6 130524765 130524936 -18992101 + (TA)n Simple_repeat Simple_repeat 2 171 0 3 1580 212 301 22 7 chr6 130524993 130525130 -18991907 + (TA)n Simple_repeat Simple_repeat 2 140 0 3 1580 570 254 37 26 chr6 130525171 130525361 -18991676 + L1_Rod LINE L1 5032 5223 -624 3 1580 594 265 110 24 chr6 130525401 130525662 -18991375 + L1_Rod LINE L1 5370 5646 -201 3 1580 414 0 0 0 chr6 130525662 130525708 -18991329 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1580 594 265 110 24 chr6 130525708 130525736 -18991301 + L1_Rod LINE L1 5647 5683 -164 3 1580 22 0 0 0 chr6 130526451 130526473 -18990564 + AT_rich Low_complexity Low_complexity 1 22 0 3 1580 372 272 32 35 chr6 130526958 130527263 -18989774 - MMSAT4 Satellite Satellite -4 304 1 3 1580 756 199 20 20 chr6 130527314 130529782 -18987255 - MMSAT4 Satellite Satellite -20 2468 1 3 1580 22 0 0 0 chr6 130531027 130531049 -18985988 + AT_rich Low_complexity Low_complexity 1 22 0 3 1580 24 32 0 0 chr6 130531075 130531106 -18985931 + AT_rich Low_complexity Low_complexity 1 31 0 3 1580 382 248 9 19 chr6 130531364 130531471 -18985566 + Lx4A LINE L1 5629 5734 -1324 3 1580 183 42 0 0 chr6 130531471 130531495 -18985542 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1580 328 280 8 25 chr6 130531495 130531508 -18985529 + Lx4B LINE L1 5735 5746 -1312 4 1580 1833 259 13 11 chr6 130531509 130531962 -18985075 + Lx4A LINE L1 5924 6377 -681 3 1580 3033 52 3 5 chr6 130531962 130532349 -18984688 + L1Md_F3 LINE L1 6185 6570 -14 4 1580 569 291 73 51 chr6 130532700 130533109 -18983928 + L1_Mur2 LINE L1 895 1312 -5774 4 1580 1042 270 3 45 chr6 130533109 130533429 -18983608 - ORR1A2 LTR MaLR -11 335 3 4 1580 514 297 0 34 chr6 130533429 130533638 -18983399 + L1_Mur2 LINE L1 5013 5214 -663 4 1580 3868 123 16 0 chr6 130533643 130534083 -18982954 + L1VL1 LINE L1 500 940 -5482 4 1580 207 0 0 0 chr6 130534083 130534106 -18982931 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1580 12994 133 8 7 chr6 130534106 130536388 -18980649 + L1VL1 LINE L1 941 3231 -467 4 1580 3704 128 18 5 chr6 130536361 130536960 -18980077 + L1_Mm LINE L1 4213 4819 -1064 4 1580 5792 220 32 42 chr6 130537237 130539579 -18977458 - Lx2B LINE L1 -1 6999 4672 4 1580 1113 106 0 0 chr6 130539608 130539769 -18977268 + B2_Mm2 SINE B2 1 161 -34 4 1580 198 0 0 0 chr6 130539769 130539791 -18977246 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 5 1580 1820 206 26 2 chr6 130539823 130540246 -18976791 + L1_Mur2 LINE L1 4185 4617 -1260 5 1580 302 328 25 0 chr6 130540370 130540489 -18976548 + Lx7 LINE L1 6884 7005 -691 5 1580 214 298 0 0 chr6 130540529 130540586 -18976451 + GA-rich Low_complexity Low_complexity 2 58 0 5 1580 356 265 22 22 chr6 130541568 130541707 -18975330 - MurSatRep1 Unknown Unknown -1393 744 606 5 1580 496 278 25 0 chr6 130541926 130542088 -18974949 + URR1B DNA MER1_type 60 225 0 5 1580 1950 234 18 7 chr6 130544098 130544532 -18972505 + Lx4B LINE L1 6422 6860 -198 5 1580 3073 203 57 11 chr6 130544661 130545435 -18971602 - L1_Mus4 LINE L1 -706 5930 5118 5 1580 456 19 0 0 chr6 130545462 130545515 -18971522 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1580 324 169 0 0 chr6 130545549 130545626 -18971411 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1580 198 143 0 0 chr6 130545625 130545660 -18971377 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1580 440 353 68 10 chr6 130545677 130545869 -18971168 + B4 SINE B4 24 226 -66 6 1580 241 329 0 0 chr6 130546243 130546316 -18970721 - RMER15 LTR ERVL -155 420 348 6 1580 413 305 61 47 chr6 130546334 130546547 -18970490 - RMER15 LTR ERVL -322 253 38 6 197 33467 86 5 4 chr6 130546572 130553066 -18963971 - L1Md_F2 LINE L1 -12 6570 98 6 1581 219 139 0 0 chr6 130553205 130553241 -18963796 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 1581 2809 176 4 0 chr6 130553250 130553743 -18963294 - Lx LINE L1 -9 6645 6151 6 1581 971 300 86 6 chr6 130553794 130554119 -18962918 + ORR1D1 LTR MaLR 9 359 -15 6 1581 354 153 0 0 chr6 130554393 130554465 -18962572 - L1_Mur1 LINE L1 -2115 3771 3700 6 1581 1285 226 0 3 chr6 130554467 130554751 -18962286 + L1_Mur2 LINE L1 5497 5779 -98 6 1581 15743 133 34 17 chr6 130555441 130558193 -18958844 - Lx3_Mus LINE L1 0 7009 4239 6 1581 2636 121 21 101 chr6 130558193 130558709 -18958328 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1581 15743 128 30 20 chr6 130558709 130559790 -18957247 - Lx3_Mus LINE L1 -1648 4238 3129 6 1581 483 282 34 0 chr6 130559772 130559921 -18957116 - L1VL4 LINE L1 -5918 384 231 7 1581 811 242 38 14 chr6 130559923 130560133 -18956904 - MTC LTR MaLR -206 215 1 7 1581 3064 158 9 9 chr6 130560476 130561005 -18956032 - L1_Mus3 LINE L1 0 6638 6110 7 1581 1106 181 64 4 chr6 130561006 130561283 -18955754 + Lx2B LINE L1 6621 7000 0 7 1581 212 365 96 0 chr6 130562430 130562545 -18954492 + ID_B1 SINE B4 95 220 -4 7 1581 7481 73 4 9 chr6 130562785 130563791 -18953246 + L1Md_F2 LINE L1 4593 5593 -290 7 1581 7838 56 1 3 chr6 130563795 130564791 -18952246 + L1Md_F2 LINE L1 5588 6581 -1 7 1581 310 225 14 27 chr6 130565791 130565864 -18951173 + ID_B1 SINE B4 95 166 -58 7 1581 305 287 29 19 chr6 130565864 130565894 -18951143 + PB1D10 SINE Alu 14 117 0 7 1581 790 314 104 17 chr6 130566247 130566707 -18950330 + Lx8 LINE L1 6314 6813 -660 7 1581 1052 211 34 21 chr6 130566709 130566942 -18950095 - ORR1A3 LTR MaLR -3 323 88 8 1581 236 105 26 0 chr6 130566956 130566994 -18950043 - MurSatRep1 Unknown Unknown -2020 117 79 8 1581 2760 83 0 46 chr6 130567018 130567432 -18949605 + L1Md_F2 LINE L1 6166 6560 -22 8 1581 245 246 33 0 chr6 130567430 130567491 -18949546 + Lx8 LINE L1 7094 7156 -317 7 1581 862 71 16 0 chr6 130568584 130568711 -18948326 + (GAAAA)n Simple_repeat Simple_repeat 4 132 0 8 1581 393 22 0 0 chr6 130569076 130569122 -18947915 + (TTA)n Simple_repeat Simple_repeat 1 46 0 8 1581 1015 214 43 13 chr6 130569126 130569358 -18947679 - Lx LINE L1 -3 6970 6732 8 1581 8581 182 21 6 chr6 130569780 130571214 -18945823 - L1_Mur2 LINE L1 -2374 3503 2050 8 1581 342 0 0 0 chr6 130571214 130571252 -18945785 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1581 8581 182 21 6 chr6 130571252 130571645 -18945392 - L1_Mur2 LINE L1 -3828 2049 1648 8 1581 2804 68 0 14 chr6 130571714 130572084 -18944953 + RLTR10B2 LTR ERVK 1 365 0 8 1581 379 160 0 39 chr6 130572223 130572301 -18944736 - MTC LTR MaLR 0 421 347 8 1581 296 309 103 39 chr6 130572723 130572878 -18944159 - RMER13A LTR ERVK -526 334 170 9 1581 7202 135 26 2 chr6 130572925 130574118 -18942919 - Lx3_Mus LINE L1 0 7009 5788 9 1581 549 96 0 0 chr6 130574121 130574215 -18942822 + (TTC)n Simple_repeat Simple_repeat 3 96 0 9 1581 3159 206 22 21 chr6 130574217 130574891 -18942146 - Lx LINE L1 -2 6652 5978 8 1581 1010 217 38 19 chr6 130574892 130575155 -18941882 + Lx4B LINE L1 5598 5865 -1193 9 1581 241 136 15 15 chr6 130575155 130575222 -18941815 + A-rich Low_complexity Low_complexity 2 68 0 9 1581 2027 240 210 6 chr6 130575259 130575908 -18941129 + Lx4B LINE L1 6274 7054 -4 9 1581 501 276 64 32 chr6 130575946 130576197 -18940840 + L1_Rod LINE L1 3996 4254 -1593 9 1581 233 279 0 11 chr6 130576360 130576520 -18940517 + (TAGA)n Simple_repeat Simple_repeat 1 158 0 9 1581 207 0 0 0 chr6 130576581 130576604 -18940433 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1581 401 154 11 0 chr6 130576604 130576695 -18940342 + (TA)n Simple_repeat Simple_repeat 1 92 0 9 1581 572 261 91 22 chr6 130576789 130577020 -18940017 + L1_Rod LINE L1 5032 5278 -569 9 1581 2793 98 11 57 chr6 130577086 130577541 -18939496 + L1Md_F2 LINE L1 6136 6569 -13 9 1581 522 268 106 23 chr6 130577544 130577735 -18939302 + L1_Rod LINE L1 5449 5646 -201 9 1581 396 0 0 0 chr6 130577735 130577779 -18939258 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1581 522 268 106 23 chr6 130577779 130577805 -18939232 + L1_Rod LINE L1 5647 5683 -164 9 1581 25 31 0 0 chr6 130578600 130578632 -18938405 + AT_rich Low_complexity Low_complexity 1 32 0 1 1581 681 222 33 32 chr6 130578928 130579989 -18937048 - MMSAT4 Satellite Satellite 0 1062 1 1 1581 5713 239 39 16 chr6 130581532 130581783 -18935254 + Lx4A LINE L1 5629 5878 -1180 1 1581 546 16 0 0 chr6 130581783 130581846 -18935191 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1581 5713 239 39 16 chr6 130581846 130582992 -18934045 + Lx4A LINE L1 5879 7057 -1 1 1581 7921 47 6 3 chr6 130583108 130584100 -18932937 + L1Md_F2 LINE L1 5588 6582 0 1 1581 550 297 42 45 chr6 130584668 130585267 -18931770 + L1_Mur2 LINE L1 834 1339 -5318 1 1581 968 276 13 26 chr6 130585277 130585564 -18931473 - ORR1A3 LTR MaLR -55 329 1 1 1581 884 263 4 0 chr6 130585564 130585811 -18931226 + L1_Mur2 LINE L1 5015 5262 -615 1 1581 5536 139 7 4 chr6 130585826 130587053 -18929984 + L1VL1 LINE L1 210 1439 -2259 1 1581 36200 37 2 9 chr6 130587048 130592442 -18924595 + L1Md_T LINE L1 233 5586 -297 1 1581 8330 37 1 0 chr6 130592442 130593437 -18923600 + L1Md_T LINE L1 5587 6582 0 1 1581 17669 145 14 12 chr6 130593438 130596613 -18920424 + L1_Mm LINE L1 1640 4819 -1064 1 1581 5336 236 34 19 chr6 130596903 130599199 -18917838 - Lx2B LINE L1 -2 6998 4658 1 1581 852 185 0 0 chr6 130599215 130599372 -18917665 + B2_Mm2 SINE B2 1 157 -38 1 1581 402 21 0 0 chr6 130599377 130599424 -18917613 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 1 1581 1648 208 16 0 chr6 130599462 130599828 -18917209 + L1_Mur2 LINE L1 4185 4556 -1321 1 1581 281 227 15 0 chr6 130600400 130600466 -18916571 + GA-rich Low_complexity Low_complexity 2 68 0 1 1581 498 288 18 0 chr6 130600883 130601046 -18915991 - URR1B DNA MER1_type 0 225 60 1 1581 3316 133 8 8 chr6 130601533 130602062 -18914975 - L1_Mus3 LINE L1 0 6638 6110 1 1581 762 223 104 0 chr6 130602062 130602264 -18914773 + Lx2B LINE L1 6620 6842 -158 1 1581 242 349 132 0 chr6 130603606 130603689 -18913348 + PB1D10 SINE Alu 4 97 -30 1 1581 223 349 48 0 chr6 130603616 130603699 -18913338 + ID_B1 SINE B4 95 181 -43 1 1581 262 206 120 9 chr6 130604890 130604998 -18912039 + L1MEd LINE L1 713 832 -5287 1 1581 218 327 29 19 chr6 130605028 130605131 -18911906 + PB1D10 SINE Alu 14 117 0 1 1581 4063 77 2 6 chr6 130605570 130606105 -18910932 + L1Md_F2 LINE L1 6047 6579 -3 1 1581 467 296 75 26 chr6 130606147 130606414 -18910623 + MTD LTR MaLR 56 364 -55 1 1581 1146 29 0 0 chr6 130606426 130606564 -18910473 + (GA)n Simple_repeat Simple_repeat 2 139 0 1 1581 245 194 32 0 chr6 130606591 130606653 -18910384 + Lx7 LINE L1 7617 7680 -16 1 1581 429 333 7 7 chr6 130606685 130606821 -18910216 + B1_Mus2 SINE Alu 7 142 -5 1 1581 657 105 40 0 chr6 130606824 130607130 -18909907 + (TA)n Simple_repeat Simple_repeat 1 318 0 1 1581 766 304 119 26 chr6 130607171 130607633 -18909404 + Lx8 LINE L1 6307 6811 -662 1 1581 1496 184 32 16 chr6 130607641 130607955 -18909082 - ORR1A4 LTR MaLR -6 323 5 1 1581 6576 191 87 126 chr6 130607962 130610001 -18907036 - ORR1A4-int LTR MaLR -3 1960 1 1 1581 905 202 65 35 chr6 130610001 130610232 -18906805 - ORR1A4 LTR MaLR 0 394 92 1 1581 8940 73 3 2 chr6 130610232 130611438 -18905599 - L1Md_F3 LINE L1 -475 5408 4201 1 1581 3420 77 5 10 chr6 130611437 130612041 -18904996 + L1Md_F3 LINE L1 5449 6050 -534 1 1581 5351 183 38 15 chr6 130612039 130612856 -18904181 - L1_Mur2 LINE L1 -3011 2866 2050 1 1581 330 67 0 0 chr6 130612856 130612901 -18904136 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1581 5351 183 38 15 chr6 130612901 130613275 -18903762 - L1_Mur2 LINE L1 -3828 2049 1648 1 1581 272 227 0 39 chr6 130613477 130613555 -18903482 - MTC LTR MaLR 0 421 347 1 1581 282 172 15 30 chr6 130614112 130614165 -18902872 - L1_Mur2 LINE L1 -2372 3505 3452 1 1581 188 34 0 33 chr6 130614165 130614195 -18902842 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 1581 6619 159 28 3 chr6 130614195 130615384 -18901653 - Lx3_Mus LINE L1 -9 7000 5783 1 1581 282 172 15 30 chr6 130615384 130615395 -18901642 - L1_Mur2 LINE L1 -2426 3451 3442 1 1581 2776 219 51 14 chr6 130615424 130616069 -18900968 - Lx LINE L1 -5 6649 5981 1 1581 1681 272 97 15 chr6 130616075 130617007 -18900030 + Lx4B LINE L1 5600 6993 -57 1 1581 540 260 65 39 chr6 130617067 130617327 -18899710 + L1_Rod LINE L1 3988 4254 -1593 1 1581 229 274 0 12 chr6 130617564 130617649 -18899388 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 1 1581 217 273 15 36 chr6 130617694 130617730 -18899307 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 1581 446 0 19 0 chr6 130617730 130617784 -18899253 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1581 342 199 11 27 chr6 130617784 130617920 -18899117 + (TA)n Simple_repeat Simple_repeat 1 133 0 1 1581 390 246 37 44 chr6 130617960 130618096 -18898941 + L1_Rod LINE L1 5029 5163 -684 1 1581 13943 119 26 36 chr6 130618097 130621212 -18895825 + L1Md_F2 LINE L1 240 3346 -2537 1 1581 189 0 0 0 chr6 130621219 130621240 -18895797 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1581 4126 91 3 16 chr6 130621254 130621861 -18895176 + L1Md_F2 LINE L1 4987 5585 -298 1 1581 7605 69 1 7 chr6 130621862 130622864 -18894173 + L1Md_F2 LINE L1 5587 6582 0 1 1581 5304 112 15 5 chr6 130622860 130623652 -18893385 + L1Md_F2 LINE L1 5783 6582 0 1 1581 23 0 0 0 chr6 130623699 130623722 -18893315 + AT_rich Low_complexity Low_complexity 1 23 0 1 1581 382 269 86 57 chr6 130623857 130624035 -18893002 + L1_Rod LINE L1 5470 5646 -201 1 1581 219 36 0 0 chr6 130624035 130624063 -18892974 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1581 382 269 86 57 chr6 130624063 130624093 -18892944 + L1_Rod LINE L1 5647 5683 -164 1 1581 1581 53 0 0 chr6 130624510 130624716 -18892321 - L1Md_A LINE L1 -1 6581 6376 1 1581 440 248 45 41 chr6 130625545 130625853 -18891184 - MMSAT4 Satellite Satellite -6 309 1 1 1581 702 215 22 21 chr6 130625897 130627117 -18889920 - MMSAT4 Satellite Satellite -22 1221 1 1 1581 5549 252 23 13 chr6 130628742 130630155 -18886882 + Lx4A LINE L1 5633 7058 0 1 1581 24 0 0 0 chr6 130630399 130630423 -18886614 + AT_rich Low_complexity Low_complexity 1 24 0 1 1581 722 280 37 67 chr6 130630906 130631419 -18885618 + L1_Mur2 LINE L1 533 1016 -2524 1 1581 984 257 4 17 chr6 130631421 130631662 -18885375 - ORR1A3 LTR MaLR -86 240 3 1 1581 756 282 16 0 chr6 130631663 130631908 -18885129 + L1_Mur2 LINE L1 5014 5262 -615 1 1581 5396 144 11 19 chr6 130631914 130632204 -18884833 + L1VL1 LINE L1 203 486 -5936 1 1581 387 0 0 0 chr6 130632204 130632247 -18884790 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1 1581 996 79 50 0 chr6 130632247 130632386 -18884651 - B1_Mus2 SINE Alu 0 147 2 1 1581 5396 137 8 10 chr6 130632386 130633744 -18883293 + L1VL1 LINE L1 487 1845 -1853 1 1581 36408 30 5 8 chr6 130633751 130639128 -18877909 + L1Md_A LINE L1 233 5586 -297 1 1581 8375 35 0 0 chr6 130639128 130640124 -18876913 + L1Md_A LINE L1 5587 6582 0 1 1581 15238 151 9 9 chr6 130640124 130641554 -18875483 + L1_Mm LINE L1 2052 3482 -2401 1 1581 369 0 0 0 chr6 130641554 130641595 -18875442 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 1581 15238 151 9 9 chr6 130641595 130642933 -18874104 + L1_Mm LINE L1 3483 4819 -1064 1 1581 5611 221 44 22 chr6 130643221 130645491 -18871546 - Lx2B LINE L1 -2 6998 4665 1 1581 862 192 0 0 chr6 130645513 130645674 -18871363 + B2_Mm2 SINE B2 1 161 -34 1 1581 282 73 0 0 chr6 130645674 130645715 -18871322 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1 1581 1830 206 26 2 chr6 130645753 130646177 -18870860 + L1_Mur1 LINE L1 4194 4627 -1259 1 1581 350 311 99 30 chr6 130646302 130646338 -18870699 + Lx7 LINE L1 6888 6923 -773 1 1581 798 11 0 0 chr6 130646338 130646429 -18870608 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1581 350 311 99 30 chr6 130646429 130646594 -18870443 + Lx7 LINE L1 6924 7103 -593 1 1581 294 182 0 0 chr6 130646801 130646867 -18870170 + GA-rich Low_complexity Low_complexity 1 66 0 1 1581 392 256 21 21 chr6 130647866 130648006 -18869031 - MurSatRep1 Unknown Unknown -1392 745 606 1 1581 25 75 0 0 chr6 130649995 130650048 -18866989 + AT_rich Low_complexity Low_complexity 1 53 0 1 1581 258 32 0 0 chr6 130650608 130650639 -18866398 + (TTA)n Simple_repeat Simple_repeat 1 31 0 1 1581 1592 256 9 26 chr6 130650654 130651083 -18865954 + Lx4B LINE L1 6432 6853 -205 1 1581 567 329 26 51 chr6 130651449 130651683 -18865354 + B4A SINE B4 2 229 -63 1 1581 341 58 19 0 chr6 130651949 130652001 -18865036 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1581 309 418 15 15 chr6 130652069 130652268 -18864769 + ID_B1 SINE B4 23 221 -3 1 1581 254 298 59 12 chr6 130652911 130652996 -18864041 - RSINE1 SINE B4 -9 156 68 1 1581 7992 115 2 11 chr6 130653087 130654321 -18862716 - L1Md_F2 LINE L1 -722 5161 3938 1 1581 3055 89 0 12 chr6 130654318 130654749 -18862288 + L1Md_F2 LINE L1 5161 5586 -297 1 1581 6677 95 28 2 chr6 130654749 130655705 -18861332 + L1Md_F2 LINE L1 5587 6567 -15 1 1581 2788 203 15 6 chr6 130655722 130656243 -18860794 + Lx LINE L1 6106 6631 -23 1 1581 339 294 40 83 chr6 130656581 130656765 -18860272 + MTEa LTR MaLR 146 349 -30 1 1581 243 353 8 48 chr6 130656968 130657093 -18859944 + RSINE1 SINE B4 6 125 -40 1 1581 237 211 35 0 chr6 130657136 130657193 -18859844 + A-rich Low_complexity Low_complexity 1 59 0 1 1581 4898 246 30 47 chr6 130657343 130658756 -18858281 - Lx3C LINE L1 -1 6975 5587 1 1581 16168 137 18 8 chr6 130658775 130662431 -18854606 - Lx3_Mus LINE L1 -189 6820 3129 1 1581 433 261 43 7 chr6 130662415 130662554 -18854483 - L1VL4 LINE L1 -5919 383 240 1 1581 855 235 37 23 chr6 130662557 130662775 -18854262 - MTC LTR MaLR -200 221 1 1 1581 2886 154 16 51 chr6 130663122 130663670 -18853367 - L1_Mus3 LINE L1 0 6638 6110 1 1581 818 213 98 5 chr6 130663670 130663873 -18853164 + Lx2B LINE L1 6620 6841 -159 1 1581 185 0 40 0 chr6 130663922 130663947 -18853090 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 1581 314 392 40 20 chr6 130664278 130664429 -18852608 + RSINE1 SINE B4 8 161 -4 1 1581 244 343 30 0 chr6 130666902 130667001 -18850036 + PB1D10 SINE Alu 16 117 0 1 1581 1291 111 0 9 chr6 130667032 130667250 -18849787 - L1Md_Gf LINE L1 -6246 276 61 1 1581 4881 43 0 0 chr6 130667250 130667834 -18849203 + L1Md_T LINE L1 5997 6580 -2 1 1581 500 299 7 20 chr6 130668147 130668294 -18848743 + B1_Mus2 SINE Alu 3 147 0 1 1581 757 311 67 19 chr6 130668349 130668825 -18848212 + Lx8 LINE L1 6310 6808 -665 1 1581 1536 206 29 13 chr6 130668836 130669150 -18847887 - ORR1A4 LTR MaLR -6 323 5 1 1581 4040 231 57 34 chr6 130669156 130670037 -18847000 - ORR1A4-int LTR MaLR -2 1961 1070 1 1581 324 0 0 0 chr6 130670037 130670073 -18846964 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1 1581 4040 231 57 34 chr6 130670073 130670391 -18846646 - ORR1A4-int LTR MaLR -894 1069 737 1 1581 1059 103 0 0 chr6 130670391 130670546 -18846491 + (TCTCC)n Simple_repeat Simple_repeat 5 159 0 1 1581 612 258 33 11 chr6 130671645 130671829 -18845208 - Lx LINE L1 -317 7156 6969 2 1581 1225 194 60 80 chr6 130671964 130672300 -18844737 + ORR1A4 LTR MaLR 1 329 0 2 1581 1229 178 47 0 chr6 130672300 130672536 -18844501 + ORR1A4-int LTR MaLR 1 247 -1716 2 1581 2770 213 24 24 chr6 130672536 130673175 -18843862 - Lx LINE L1 -38 6616 5978 2 1581 1073 211 19 63 chr6 130673170 130673488 -18843549 + Lx5 LINE L1 5592 5895 -1155 2 1581 1677 257 84 7 chr6 130673501 130674145 -18842892 + Lx4B LINE L1 6275 6981 -19 2 1581 521 252 71 46 chr6 130674156 130674439 -18842598 + L1_Rod LINE L1 3965 4254 -1593 2 1581 22 0 0 0 chr6 130674545 130674567 -18842470 + AT_rich Low_complexity Low_complexity 1 22 0 2 1581 233 279 0 11 chr6 130674629 130674762 -18842275 + (TAGA)n Simple_repeat Simple_repeat 1 131 0 2 1581 2861 62 14 3 chr6 130674828 130675181 -18841856 + IAPEY2_LTR LTR ERVK 1 357 0 2 1581 773 113 50 50 chr6 130675181 130675340 -18841697 + IAPLTR4_I LTR ERVK 22 180 -1290 2 1581 6112 140 29 48 chr6 130675339 130676502 -18840535 + IAPEY3-int LTR ERVK 524 1664 -6016 2 1581 2410 115 8 43 chr6 130676502 130676893 -18840144 + L1Md_F2 LINE L1 6195 6571 -11 2 1581 425 231 66 53 chr6 130676925 130677076 -18839961 + L1_Rod LINE L1 5486 5638 -209 2 1581 687 12 0 0 chr6 130677080 130677160 -18839877 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 1581 297 0 0 0 chr6 130677160 130677192 -18839845 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 197 682 222 32 29 chr6 130678547 130679585 -18837452 - MMSAT4 Satellite Satellite -13 1040 1 2 1582 22 88 0 0 chr6 130680836 130680893 -18836144 + AT_rich Low_complexity Low_complexity 1 57 0 2 1582 916 208 9 9 chr6 130680990 130681213 -18835824 + Lx4A LINE L1 5643 5865 -1193 2 1582 207 0 0 0 chr6 130681215 130681238 -18835799 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1582 432 0 0 0 chr6 130681238 130681285 -18835752 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1582 13816 18 0 0 chr6 130681289 130682961 -18834076 + L1Md_A LINE L1 3915 5586 -297 2 1582 8753 19 0 0 chr6 130682961 130683957 -18833080 + L1Md_A LINE L1 5587 6582 0 2 1582 4339 252 25 5 chr6 130683969 130685081 -18831956 + Lx4A LINE L1 5924 7058 0 2 1582 611 291 48 59 chr6 130685759 130686197 -18830840 + L1_Mur2 LINE L1 907 1339 -5747 2 1582 1008 273 5 31 chr6 130686210 130686491 -18830546 - ORR1A3 LTR MaLR -59 325 3 2 1582 711 273 12 0 chr6 130686492 130686734 -18830303 + L1_Mur2 LINE L1 5014 5258 -619 2 1582 16358 143 36 60 chr6 130686744 130687937 -18829100 + L1VL1 LINE L1 419 1634 -4249 2 1582 1510 46 10 0 chr6 130687937 130688133 -18828904 + MTA_Mm LTR MaLR 145 342 -54 2 1582 16358 143 36 60 chr6 130688133 130691255 -18825782 + L1VL1 LINE L1 1635 4819 -1064 2 1582 4985 237 34 16 chr6 130691546 130693832 -18823205 - Lx2B LINE L1 0 7000 4658 2 1582 861 178 0 0 chr6 130693848 130694005 -18823032 + B2_Mm2 SINE B2 1 157 -38 2 1582 252 0 0 0 chr6 130694010 130694038 -18822999 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 2 1582 1615 211 38 0 chr6 130694075 130694492 -18822545 + L1_Mur2 LINE L1 4185 4617 -1260 2 1582 22 0 0 0 chr6 130694652 130694674 -18822363 + AT_rich Low_complexity Low_complexity 1 22 0 2 1582 528 100 0 0 chr6 130695041 130695121 -18821916 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 1582 306 287 22 22 chr6 130696111 130696250 -18820787 - MurSatRep1 Unknown Unknown -1393 744 606 2 1582 530 320 14 60 chr6 130696421 130696637 -18820400 + URR1B DNA MER1_type 20 225 0 2 1582 3377 30 5 0 chr6 130696713 130697117 -18819920 + L1Md_T LINE L1 6175 6580 -2 2 1582 24 77 0 0 chr6 130698398 130698450 -18818587 + AT_rich Low_complexity Low_complexity 1 52 0 2 1582 522 0 0 0 chr6 130698982 130699040 -18817997 + (TTA)n Simple_repeat Simple_repeat 1 58 0 2 1582 1229 280 9 26 chr6 130699055 130699484 -18817553 + Lx4B LINE L1 6432 6853 -205 2 1582 25625 79 14 4 chr6 130699831 130706018 -18811019 - L1Md_T LINE L1 0 6585 51 2 1582 606 347 9 34 chr6 130706066 130706299 -18810738 + B4A SINE B4 3 229 -63 2 1582 369 0 0 0 chr6 130706563 130706604 -18810433 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1582 359 368 49 49 chr6 130706661 130706864 -18810173 + ID_B1 SINE B4 19 221 -3 2 1582 258 313 47 24 chr6 130707515 130707600 -18809437 - RSINE1 SINE B4 -11 154 68 2 1582 7421 126 1 0 chr6 130707691 130708914 -18808123 - L1Md_F2 LINE L1 -722 5161 3938 2 1582 2881 81 9 12 chr6 130708911 130709338 -18807699 + L1Md_F2 LINE L1 5161 5586 -297 2 1582 6856 95 4 18 chr6 130709339 130710336 -18806701 + L1Md_F2 LINE L1 5588 6570 -12 2 1582 2577 195 19 10 chr6 130710350 130710873 -18806164 + Lx LINE L1 6106 6633 -21 2 1582 298 219 27 27 chr6 130711344 130711419 -18805618 + MTEa LTR MaLR 275 349 -30 2 1582 203 317 0 24 chr6 130711806 130711890 -18805147 + GA-rich Low_complexity Low_complexity 1 82 0 2 1582 216 209 0 0 chr6 130711807 130711850 -18805187 + A-rich Low_complexity Low_complexity 1 43 0 2 1582 3654 243 16 76 chr6 130712007 130713273 -18803764 - Lx3C LINE L1 -11 6965 5776 2 1582 2912 38 0 0 chr6 130713276 130713618 -18803419 + ORR1A0 LTR MaLR 1 342 -4 2 1582 12786 60 1 1 chr6 130713622 130715329 -18801708 + ORR1A0-int LTR MaLR 1 1706 -86 2 1582 3658 22 0 0 chr6 130715329 130715777 -18801260 + L1Md_T LINE L1 5139 5586 -297 2 1582 8177 43 1 0 chr6 130715777 130716771 -18800266 + L1Md_T LINE L1 5587 6581 -1 2 1582 815 10 0 0 chr6 130716771 130716867 -18800170 + ORR1A0-int LTR MaLR 1695 1790 -2 2 1582 2231 68 109 0 chr6 130716870 130717181 -18799856 + ORR1A0 LTR MaLR 2 346 0 2 1582 2432 194 62 19 chr6 130717185 130717817 -18799220 - L1_Mur1 LINE L1 -110 5776 5118 2 1582 420 111 0 0 chr6 130717825 130717888 -18799149 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1582 297 89 0 0 chr6 130717926 130717971 -18799066 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1582 490 333 63 14 chr6 130718000 130718207 -18798830 + B4 SINE B4 24 240 -52 2 1582 299 312 0 0 chr6 130718615 130718692 -18798345 - RMER15 LTR ERVL -155 420 344 2 1582 437 335 61 47 chr6 130718706 130718919 -18798118 - RMER15 LTR ERVL -322 253 38 2 1582 2537 192 8 18 chr6 130719068 130719577 -18797460 - Lx LINE L1 0 6654 6151 2 1582 957 282 122 12 chr6 130719625 130719944 -18797093 + ORR1D1 LTR MaLR 6 359 -15 2 1582 286 181 0 0 chr6 130720216 130720288 -18796749 - L1_Mur1 LINE L1 -2115 3771 3700 2 1582 985 265 3 3 chr6 130720290 130720574 -18796463 + L1_Mur2 LINE L1 5497 5780 -97 2 1582 240 294 44 0 chr6 130721046 130721114 -18795923 - B1F SINE Alu -51 98 28 2 1582 345 368 59 35 chr6 130721669 130721838 -18795199 - B4 SINE B4 -109 183 11 2 1582 2492 151 7 11 chr6 130721901 130722342 -18794695 - Lx3_Mus LINE L1 0 7009 6571 2 1582 5408 113 1 6 chr6 130722372 130723171 -18793866 - L1Md_F2 LINE L1 -13 6569 5775 2 1582 5819 125 19 10 chr6 130723171 130724184 -18792853 - Lx3_Mus LINE L1 -444 6565 5548 2 1582 232 259 107 0 chr6 130724739 130724851 -18792186 + L1MEd LINE L1 709 832 -5287 2 1582 329 279 53 18 chr6 130724872 130724985 -18792052 + PB1D10 SINE Alu 1 117 0 2 1582 805 314 84 25 chr6 130725330 130725804 -18791233 + Lx8 LINE L1 6307 6808 -665 2 1582 1006 224 42 12 chr6 130725812 130726052 -18790985 - ORR1A3 LTR MaLR -3 323 77 2 1582 746 73 9 0 chr6 130728163 130728273 -18788764 + (GAGAA)n Simple_repeat Simple_repeat 4 114 0 2 1582 1178 68 0 6 chr6 130728297 130728459 -18788578 + (GGGAA)n Simple_repeat Simple_repeat 5 165 0 2 1582 216 111 0 0 chr6 130728829 130728865 -18788172 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2 1582 1026 202 25 13 chr6 130728869 130729105 -18787932 - Lx LINE L1 -3 6970 6732 2 1582 356 298 132 47 chr6 130729302 130729559 -18787478 - RMER13A LTR ERVK -398 462 184 2 1582 2066 186 29 19 chr6 130729560 130730050 -18786987 - L1_Mur2 LINE L1 -2377 3500 3003 2 1582 216 0 0 0 chr6 130730050 130730074 -18786963 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1582 966 118 0 0 chr6 130730074 130730210 -18786827 - B1_Mus2 SINE Alu -11 136 1 2 1582 2066 186 29 19 chr6 130730210 130730240 -18786797 - L1_Mur2 LINE L1 -2875 3002 2975 2 1582 4936 158 57 3 chr6 130730226 130731128 -18785909 - Lx3_Mus LINE L1 -271 6738 5789 2 1582 3198 194 25 14 chr6 130731140 130731807 -18785230 - Lx LINE L1 -2 6652 5978 2 1582 1815 253 87 19 chr6 130731808 130732754 -18784283 + Lx4B LINE L1 5598 7054 -4 2 1582 498 284 59 29 chr6 130732792 130733031 -18784006 + L1_Rod LINE L1 3996 4241 -1606 2 1582 262 294 6 22 chr6 130733148 130733329 -18783708 + (TA)n Simple_repeat Simple_repeat 2 179 0 2 1582 210 301 22 8 chr6 130733386 130733520 -18783517 + (TA)n Simple_repeat Simple_repeat 1 136 0 2 1582 474 292 38 26 chr6 130733559 130733781 -18783256 + L1_Rod LINE L1 5032 5291 -589 2 1582 506 277 114 28 chr6 130733794 130734055 -18782982 + L1_Rod LINE L1 5370 5646 -201 2 1582 378 0 0 0 chr6 130734055 130734097 -18782940 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1582 506 277 114 28 chr6 130734097 130734125 -18782912 + L1_Rod LINE L1 5647 5683 -164 2 1582 352 278 32 35 chr6 130735346 130735651 -18781386 - MMSAT4 Satellite Satellite -4 304 1 2 1582 754 195 20 20 chr6 130735703 130737820 -18779217 - MMSAT4 Satellite Satellite -20 2117 1 2 1582 271 222 0 0 chr6 130737856 130737919 -18779118 - MMSAT4 Satellite Satellite -76 92 30 2 1582 22 0 0 0 chr6 130739164 130739186 -18777851 + AT_rich Low_complexity Low_complexity 1 22 0 2 1582 24 32 0 0 chr6 130739212 130739243 -18777794 + AT_rich Low_complexity Low_complexity 1 31 0 2 1582 2886 246 31 16 chr6 130739500 130739771 -18777266 + Lx4A LINE L1 5629 5889 -1169 2 1582 186 43 0 0 chr6 130739771 130739794 -18777243 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1582 2886 246 31 16 chr6 130739794 130740260 -18776777 + Lx4A LINE L1 5890 6377 -681 2 1582 3080 42 3 5 chr6 130740260 130740647 -18776390 + L1Md_F3 LINE L1 6185 6570 -14 2 1582 658 278 73 51 chr6 130740997 130741406 -18775631 + L1_Mur2 LINE L1 895 1312 -5774 2 1582 1010 260 10 52 chr6 130741406 130741726 -18775311 - ORR1A2 LTR MaLR -11 335 3 2 1582 527 292 0 38 chr6 130741726 130741936 -18775101 + L1_Mur2 LINE L1 5013 5214 -663 2 1582 3805 126 16 0 chr6 130741941 130742381 -18774656 + L1VL1 LINE L1 500 940 -5482 2 1582 186 43 0 0 chr6 130742381 130742404 -18774633 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1582 12991 133 8 7 chr6 130742404 130744686 -18772351 + L1VL1 LINE L1 941 3231 -467 2 1582 3636 134 18 5 chr6 130744659 130745258 -18771779 + L1_Mm LINE L1 4213 4819 -1064 2 1582 5888 217 30 42 chr6 130745535 130747898 -18769139 - Lx2B LINE L1 -1 6999 4653 2 1582 1131 99 0 0 chr6 130747909 130748070 -18768967 + B2_Mm2 SINE B2 1 161 -34 2 1582 234 0 0 0 chr6 130748070 130748096 -18768941 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2 1582 1777 211 26 5 chr6 130748128 130748552 -18768485 + L1_Mur2 LINE L1 4185 4617 -1260 2 1582 322 319 25 0 chr6 130748676 130748795 -18768242 + Lx7 LINE L1 6884 7005 -691 2 1582 214 298 0 0 chr6 130748835 130748892 -18768145 + GA-rich Low_complexity Low_complexity 2 58 0 2 1582 356 265 22 22 chr6 130749871 130750010 -18767027 - MurSatRep1 Unknown Unknown -1393 744 606 2 1582 496 278 25 0 chr6 130750224 130750386 -18766651 + URR1B DNA MER1_type 60 225 0 2 1582 1950 236 7 7 chr6 130752404 130752830 -18764207 + Lx4B LINE L1 6435 6860 -198 2 1582 3081 202 57 12 chr6 130752959 130753734 -18763303 - L1_Mus4 LINE L1 -706 5930 5118 2 1582 219 69 0 0 chr6 130753761 130753790 -18763247 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 1582 336 158 0 0 chr6 130753824 130753900 -18763137 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1582 219 114 0 0 chr6 130753900 130753935 -18763102 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1582 459 360 64 10 chr6 130753952 130754154 -18762883 + B4 SINE B4 24 236 -56 3 1582 258 315 0 0 chr6 130754518 130754591 -18762446 - RMER15 LTR ERVL -155 420 348 3 1582 352 320 61 47 chr6 130754609 130754822 -18762215 - RMER15 LTR ERVL -322 253 38 3 1582 33071 84 6 10 chr6 130754847 130761375 -18755662 - L1Md_F2 LINE L1 -12 6570 98 3 1582 450 94 0 0 chr6 130761512 130761576 -18755461 + (TTG)n Simple_repeat Simple_repeat 2 65 0 3 1582 2852 171 4 0 chr6 130761576 130762067 -18754970 - Lx LINE L1 -11 6643 6151 3 1582 970 300 86 6 chr6 130762118 130762443 -18754594 + ORR1D1 LTR MaLR 9 359 -15 3 1582 341 157 0 0 chr6 130762719 130762789 -18754248 - L1_Mur1 LINE L1 -2117 3769 3700 3 1582 1315 231 0 3 chr6 130762791 130763074 -18753963 + L1_Mur1 LINE L1 5506 5787 -99 3 1582 395 365 95 53 chr6 130764096 130764339 -18752698 - B4 SINE B4 -11 281 29 3 1582 15052 131 53 11 chr6 130764424 130768156 -18748881 - Lx3_Mus LINE L1 0 7009 3129 3 1582 533 280 20 0 chr6 130768138 130768288 -18748749 - L1VL4 LINE L1 -5918 384 232 3 1582 834 238 38 14 chr6 130768288 130768501 -18748536 - MTC LTR MaLR -203 218 1 3 1582 3033 162 9 9 chr6 130768844 130769373 -18747664 - L1_Mus3 LINE L1 0 6638 6110 3 1582 1141 167 64 4 chr6 130769374 130769651 -18747386 + Lx2B LINE L1 6621 7000 0 3 1582 252 339 96 0 chr6 130770799 130770914 -18746123 + ID_B1 SINE B4 95 220 -4 3 1582 7371 77 5 11 chr6 130771154 130772154 -18744883 + L1Md_F2 LINE L1 4593 5586 -297 3 1582 7717 62 4 1 chr6 130772154 130773147 -18743890 + L1Md_F2 LINE L1 5587 6582 0 3 1582 304 239 0 29 chr6 130774148 130774217 -18742820 + ID_B1 SINE B4 95 161 -63 3 1582 294 297 29 19 chr6 130774217 130774251 -18742786 + PB1D10 SINE Alu 14 117 0 3 1582 878 302 107 18 chr6 130774597 130775055 -18741982 + Lx8 LINE L1 6315 6813 -660 3 1582 1046 198 39 26 chr6 130775057 130775290 -18741747 - ORR1A3 LTR MaLR -3 323 88 3 1582 2684 91 0 46 chr6 130775367 130775780 -18741257 + L1Md_F2 LINE L1 6167 6560 -22 3 1582 242 213 182 26 chr6 130775778 130775855 -18741182 + Lx8 LINE L1 7094 7182 -291 3 1582 1036 43 14 0 chr6 130776933 130777071 -18739966 + (GAAAA)n Simple_repeat Simple_repeat 4 143 0 3 1582 306 0 0 0 chr6 130777438 130777472 -18739565 + (TTA)n Simple_repeat Simple_repeat 1 34 0 3 1582 1026 225 30 13 chr6 130777483 130777717 -18739320 - Lx LINE L1 -3 6970 6733 3 1582 8609 182 19 10 chr6 130778151 130779591 -18737446 - L1_Mur2 LINE L1 -2374 3503 2050 3 1582 180 0 0 0 chr6 130779591 130779611 -18737426 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1582 8609 182 19 10 chr6 130779611 130780009 -18737028 - L1_Mur2 LINE L1 -3828 2049 1648 3 1582 2681 60 0 90 chr6 130780078 130780479 -18736558 + RLTR10B2 LTR ERVK 1 365 0 3 1582 372 160 0 39 chr6 130780618 130780696 -18736341 - MTC LTR MaLR 0 421 347 3 1582 251 322 103 39 chr6 130781118 130781273 -18735764 - RMER13A LTR ERVK -526 334 170 3 1582 7214 137 25 2 chr6 130781320 130782514 -18734523 - Lx3_Mus LINE L1 0 7009 5788 3 1582 846 20 0 0 chr6 130782518 130782618 -18734419 + (TTC)n Simple_repeat Simple_repeat 2 101 0 3 1582 6404 38 3 0 chr6 130782657 130783431 -18733606 - L1Md_T LINE L1 -1 6581 5806 3 1582 3121 195 26 18 chr6 130783431 130784089 -18732948 - Lx LINE L1 -14 6640 5978 3 1582 2075 252 159 25 chr6 130784090 130785098 -18731939 + Lx4B LINE L1 5598 7054 -4 3 1582 512 263 63 36 chr6 130785136 130785388 -18731649 + L1_Rod LINE L1 3996 4254 -1593 3 1582 247 282 7 27 chr6 130785551 130785697 -18731340 + (TA)n Simple_repeat Simple_repeat 2 144 0 3 1582 382 163 10 10 chr6 130785759 130785858 -18731179 + (TA)n Simple_repeat Simple_repeat 1 99 0 3 1582 493 254 106 23 chr6 130785952 130786170 -18730867 + L1_Rod LINE L1 5032 5267 -580 3 1582 2788 98 11 57 chr6 130786247 130786702 -18730335 + L1Md_F2 LINE L1 6136 6569 -13 3 1582 561 249 68 31 chr6 130786705 130786896 -18730141 + L1_Rod LINE L1 5449 5646 -201 3 1582 387 0 0 0 chr6 130786896 130786939 -18730098 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1582 258 280 58 50 chr6 130788087 130788226 -18728811 - MMSAT4 Satellite Satellite 0 168 29 3 1582 648 224 32 32 chr6 130788265 130789316 -18727721 - MMSAT4 Satellite Satellite -12 1051 1 3 1582 5644 238 52 12 chr6 130790858 130791109 -18725928 + Lx4A LINE L1 5629 5887 -1171 3 1582 567 29 0 0 chr6 130791109 130791178 -18725859 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1582 303 28 0 0 chr6 130791178 130791213 -18725824 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1582 5644 238 52 12 chr6 130791213 130792335 -18724702 + Lx4A LINE L1 5888 7057 -1 3 1582 768 22 0 32 chr6 130792448 130792543 -18724494 + L1Md_F3 LINE L1 5588 5679 -905 3 1582 4546 234 36 13 chr6 130792540 130794546 -18722491 - Lx2B LINE L1 -276 6724 4658 3 1582 843 191 0 0 chr6 130794562 130794719 -18722318 + B2_Mm2 SINE B2 1 157 -38 3 1582 279 0 0 0 chr6 130794724 130794755 -18722282 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 3 1582 464 301 18 0 chr6 130794927 130795090 -18721947 - URR1B DNA MER1_type 0 225 60 3 1582 3294 136 11 8 chr6 130795573 130796100 -18720937 - L1_Mus3 LINE L1 0 6638 6110 3 1582 741 228 104 0 chr6 130796100 130796302 -18720735 + Lx2B LINE L1 6620 6842 -158 3 1582 22 0 0 0 chr6 130797445 130797467 -18719570 + AT_rich Low_complexity Low_complexity 1 22 0 3 1582 242 349 132 0 chr6 130797646 130797729 -18719308 + PB1D10 SINE Alu 4 97 -30 3 1582 223 349 48 0 chr6 130797656 130797739 -18719298 + ID_B1 SINE B4 95 181 -43 3 1582 250 215 120 9 chr6 130798932 130799040 -18717997 + L1MEd LINE L1 713 832 -5287 3 1582 21 0 0 0 chr6 130799220 130799241 -18717796 + AT_rich Low_complexity Low_complexity 1 21 0 3 1582 4047 75 8 0 chr6 130799609 130800141 -18716896 + L1Md_F2 LINE L1 6047 6582 0 3 1582 406 295 79 30 chr6 130800184 130800451 -18716586 + MTD LTR MaLR 56 364 -55 3 1582 483 18 0 0 chr6 130800462 130800518 -18716519 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 1582 263 177 32 0 chr6 130800545 130800607 -18716430 + Lx7 LINE L1 7617 7680 -16 3 1582 396 341 8 8 chr6 130800640 130800773 -18716264 + B1_Mus2 SINE Alu 7 139 -8 3 1582 569 61 12 0 chr6 130800773 130800855 -18716182 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 1582 645 312 90 25 chr6 130800902 130801303 -18715734 + Lx8 LINE L1 6391 6817 -656 3 1582 1528 202 25 10 chr6 130801306 130801620 -18715417 - ORR1A4 LTR MaLR -6 323 5 3 1582 6703 188 86 126 chr6 130801627 130803669 -18713368 - ORR1A4-int LTR MaLR -3 1960 1 3 1582 868 198 69 39 chr6 130803669 130803900 -18713137 - ORR1A4 LTR MaLR 0 394 92 3 1582 8793 167 148 5 chr6 130803900 130806490 -18710547 - L1_Mm LINE L1 -475 5408 2059 3 1582 225 108 0 0 chr6 130806490 130806527 -18710510 + (TGG)n Simple_repeat Simple_repeat 1 37 0 3 1582 459 0 0 0 chr6 130806528 130806579 -18710458 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1582 5863 240 274 9 chr6 130806579 130806944 -18710093 - L1_Mm LINE L1 -3822 2058 1666 3 1582 307 203 0 39 chr6 130807151 130807228 -18709809 - MTC LTR MaLR -1 420 347 3 1582 327 169 15 0 chr6 130807784 130807849 -18709188 - L1_Mur2 LINE L1 -2372 3505 3440 3 1582 6647 157 30 2 chr6 130807858 130809051 -18707986 - Lx3_Mus LINE L1 0 7009 5783 3 1582 234 116 0 0 chr6 130809051 130809094 -18707943 + (TTC)n Simple_repeat Simple_repeat 3 45 0 3 1582 2707 223 52 14 chr6 130809096 130809733 -18707304 - Lx LINE L1 -13 6641 5981 3 197 1672 256 80 23 chr6 130809739 130810698 -18706339 + Lx4B LINE L1 5600 7053 -5 3 1583 499 279 64 39 chr6 130810709 130810992 -18706045 + L1_Rod LINE L1 3965 4254 -1593 3 1583 215 279 11 38 chr6 130811105 130811288 -18705749 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 1583 245 262 0 12 chr6 130811217 130811302 -18705735 + (TAGA)n Simple_repeat Simple_repeat 4 87 0 3 1583 494 221 10 0 chr6 130811350 130811550 -18705487 + (TA)n Simple_repeat Simple_repeat 1 202 0 3 1583 405 238 37 44 chr6 130811598 130811734 -18705303 + L1_Rod LINE L1 5029 5163 -684 3 1583 4914 146 35 26 chr6 130811735 130813532 -18703505 + L1Md_F2 LINE L1 240 2052 -3831 3 1583 6842 109 2 0 chr6 130813529 130814535 -18702502 + L1Md_F2 LINE L1 4578 5585 -298 3 1583 7491 76 2 3 chr6 130814536 130815533 -18701504 + L1Md_F2 LINE L1 5587 6582 0 3 1583 5342 116 2 4 chr6 130815528 130816327 -18700710 + L1Md_F2 LINE L1 5783 6580 -2 3 1583 423 280 78 51 chr6 130816487 130816712 -18700325 + L1_Rod LINE L1 5422 5646 -201 3 1583 543 43 0 0 chr6 130816712 130816782 -18700255 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1583 423 280 78 51 chr6 130816782 130816812 -18700225 + L1_Rod LINE L1 5647 5683 -164 3 1583 467 242 45 41 chr6 130818050 130818358 -18698679 - MMSAT4 Satellite Satellite -6 309 1 3 1583 712 214 20 20 chr6 130818402 130819454 -18697583 - MMSAT4 Satellite Satellite -22 1051 1 3 1583 5339 254 44 3 chr6 130821076 130821324 -18695713 + Lx4A LINE L1 5629 5876 -1182 3 1583 921 58 0 0 chr6 130821324 130821444 -18695593 + (TA)n Simple_repeat Simple_repeat 2 121 0 3 1583 5339 254 44 3 chr6 130821444 130822569 -18694468 + Lx4A LINE L1 5877 7057 -1 3 1583 24 0 0 0 chr6 130822813 130822837 -18694200 + AT_rich Low_complexity Low_complexity 1 24 0 3 1583 824 285 38 29 chr6 130823319 130823805 -18693232 + L1_Mur2 LINE L1 533 1016 -2524 3 1583 1027 256 0 12 chr6 130823807 130824048 -18692989 - ORR1A3 LTR MaLR -86 240 3 3 1583 798 286 4 0 chr6 130824049 130824297 -18692740 + L1_Mur2 LINE L1 5014 5262 -615 3 1583 5332 147 1 42 chr6 130824303 130824617 -18692420 + L1VL1 LINE L1 203 486 -5936 3 1583 940 101 50 0 chr6 130824617 130824756 -18692281 - B1_Mus2 SINE Alu 0 147 2 3 1583 6170 141 7 19 chr6 130824756 130826369 -18690668 + L1VL1 LINE L1 487 2092 -1606 3 1583 8330 34 1 0 chr6 130826410 130827842 -18689195 - L1Md_A LINE L1 0 6582 5150 3 1583 10333 80 9 39 chr6 130827837 130830047 -18686990 - L1Md_F LINE L1 -3309 2574 434 3 1583 13833 152 6 20 chr6 130830047 130831242 -18685795 + L1_Mm LINE L1 2295 3482 -2401 3 1583 204 40 0 0 chr6 130831242 130831267 -18685770 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3 1583 13833 152 6 20 chr6 130831267 130832632 -18684405 + L1_Mm LINE L1 3483 4819 -1064 3 1583 226 335 72 79 chr6 130832631 130832923 -18684114 + Lx7 LINE L1 6461 6750 -946 3 1583 4742 234 61 21 chr6 130832923 130835141 -18681896 - Lx2 LINE L1 0 6997 4665 3 1583 994 176 0 5 chr6 130835163 130835352 -18681685 + B2_Mm2 SINE B2 1 188 -7 3 1583 648 214 7 7 chr6 130835391 130835537 -18681500 + L1_Mur1 LINE L1 4185 4330 -1547 3 1583 237 253 80 57 chr6 130835537 130835625 -18681412 + ORR1A1-int LTR MaLR 132 221 -1571 3 1583 892 176 70 0 chr6 130835625 130835812 -18681225 + L1_Mur1 LINE L1 4428 4627 -1259 3 1583 435 324 22 62 chr6 130835937 130836161 -18680876 + Lx7 LINE L1 6888 7102 -594 3 1583 258 194 0 0 chr6 130836371 130836433 -18680604 + GA-rich Low_complexity Low_complexity 1 62 0 3 1583 373 270 21 21 chr6 130837427 130837567 -18679470 - MurSatRep1 Unknown Unknown -1392 745 606 3 1583 25 75 0 0 chr6 130839557 130839610 -18677427 + AT_rich Low_complexity Low_complexity 1 53 0 3 1583 345 47 0 0 chr6 130840168 130840211 -18676826 + (TTA)n Simple_repeat Simple_repeat 1 43 0 4 1583 1679 253 7 21 chr6 130840226 130840654 -18676383 + Lx4B LINE L1 6432 6853 -205 4 1583 554 350 8 34 chr6 130841040 130841274 -18675763 + B4A SINE B4 2 229 -63 4 1583 591 51 0 0 chr6 130841540 130841619 -18675418 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 1583 246 434 15 15 chr6 130841687 130841886 -18675151 + ID_B1 SINE B4 23 221 -3 4 1583 261 301 72 0 chr6 130842534 130842617 -18674420 - RSINE1 SINE B4 -7 158 70 4 1583 7957 116 2 11 chr6 130842710 130843944 -18673093 - L1Md_F2 LINE L1 -722 5161 3938 4 1583 2952 99 0 14 chr6 130843941 130844373 -18672664 + L1Md_F2 LINE L1 5161 5586 -297 4 1583 6784 88 28 2 chr6 130844373 130845329 -18671708 + L1Md_F2 LINE L1 5587 6567 -15 4 1583 2745 206 15 6 chr6 130845346 130845868 -18671169 + Lx LINE L1 6106 6632 -22 4 1583 342 308 29 72 chr6 130846205 130846389 -18670648 + MTEa LTR MaLR 146 349 -30 4 1583 248 353 8 40 chr6 130846592 130846716 -18670321 + RSINE1 SINE B4 6 125 -40 4 1583 237 211 35 0 chr6 130846759 130846816 -18670221 + A-rich Low_complexity Low_complexity 1 59 0 4 1583 4731 258 44 18 chr6 130846966 130848320 -18668717 - Lx3C LINE L1 -1 6975 5587 4 1583 16058 140 17 7 chr6 130848339 130851998 -18665039 - Lx3_Mus LINE L1 -189 6820 3129 4 1583 455 268 43 0 chr6 130851982 130852120 -18664917 - L1VL4 LINE L1 -5919 383 240 4 1583 792 244 37 23 chr6 130852123 130852341 -18664696 - MTC LTR MaLR -200 221 1 4 1583 2838 160 16 51 chr6 130852686 130853234 -18663803 - L1_Mus3 LINE L1 0 6638 6110 4 1583 833 229 21 5 chr6 130853234 130853423 -18663614 + Lx2B LINE L1 6620 6811 -189 4 1583 242 29 29 0 chr6 130853486 130853521 -18663516 + (TAA)n Simple_repeat Simple_repeat 2 37 0 4 1583 210 154 0 0 chr6 130854307 130854346 -18662691 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 4 1583 224 309 83 0 chr6 130854839 130854923 -18662114 + PB1D10 SINE Alu 24 114 -3 4 1583 225 259 56 45 chr6 130855392 130855481 -18661556 - L1MEg LINE L1 -5333 751 662 4 1583 1370 107 0 9 chr6 130856611 130856829 -18660208 - L1Md_Gf LINE L1 -6246 276 61 4 1583 4865 46 0 0 chr6 130856829 130857415 -18659622 + L1Md_T LINE L1 5997 6582 0 4 1583 424 292 13 24 chr6 130857726 130857866 -18659171 + B1_Mus2 SINE Alu 3 145 -4 4 1583 691 307 112 30 chr6 130857930 130858394 -18658643 + Lx8 LINE L1 6310 6811 -662 4 1583 1489 189 39 16 chr6 130858402 130858714 -18658323 - ORR1A4 LTR MaLR -6 323 5 4 1583 4479 201 75 80 chr6 130858721 130859634 -18657403 - ORR1A4-int LTR MaLR -3 1960 1070 4 1583 405 0 0 0 chr6 130859634 130859679 -18657358 + (TAA)n Simple_repeat Simple_repeat 2 46 0 4 1583 4479 201 75 80 chr6 130859679 130859979 -18657058 - ORR1A4-int LTR MaLR -894 1069 755 4 1583 479 283 44 0 chr6 130859884 130859997 -18657040 - B1_Mm SINE Alu -23 124 7 4 1583 504 0 0 0 chr6 130859997 130860053 -18656984 + (TTCTC)n Simple_repeat Simple_repeat 1 56 0 4 1583 1290 42 0 26 chr6 130860056 130860322 -18656715 + (TCTCC)n Simple_repeat Simple_repeat 1 258 0 4 1583 673 272 26 10 chr6 130861419 130861612 -18655425 - Lx LINE L1 -309 7164 6969 4 1583 1296 210 48 81 chr6 130861729 130862061 -18654976 + ORR1A4 LTR MaLR 1 321 -8 4 1583 1176 186 47 0 chr6 130862065 130862301 -18654736 + ORR1A4-int LTR MaLR 1 247 -1716 4 1583 2810 221 23 43 chr6 130862301 130862953 -18654084 - Lx LINE L1 -38 6616 5978 4 1583 1180 226 20 23 chr6 130862950 130863253 -18653784 + Lx5 LINE L1 5594 5895 -1155 4 1583 482 112 0 123 chr6 130863959 130864162 -18652875 + GA-rich Low_complexity Low_complexity 3 180 0 4 1583 297 0 0 0 chr6 130864554 130864587 -18652450 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4 1583 1064 218 25 13 chr6 130864595 130864832 -18652205 - Lx3B LINE L1 -3 6970 6731 4 1583 295 307 97 26 chr6 130865085 130865239 -18651798 - RMER13B LTR ERVK -482 426 262 4 1583 7874 180 25 35 chr6 130865278 130866745 -18650292 - L1_Mur2 LINE L1 -2372 3505 2073 4 1583 255 79 0 0 chr6 130866745 130866783 -18650254 + (TGG)n Simple_repeat Simple_repeat 1 38 0 4 1583 7874 180 25 35 chr6 130866783 130867196 -18649841 - L1_Mur2 LINE L1 -3805 2072 1642 4 1583 361 160 0 39 chr6 130867392 130867470 -18649567 - MTC LTR MaLR 0 421 347 4 1583 265 342 119 3 chr6 130867795 130868030 -18649007 - RMER13A LTR ERVK -431 477 184 4 1583 303 177 16 0 chr6 130868030 130868092 -18648945 - L1_Mur2 LINE L1 -2375 3502 3440 4 1583 2005 158 29 0 chr6 130868096 130868444 -18648593 - Lx3_Mus LINE L1 0 7009 6652 4 1583 4860 34 0 7 chr6 130868433 130869019 -18648018 + L1Md_A LINE L1 6001 6582 0 4 1583 350 129 16 0 chr6 130869381 130869443 -18647594 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1583 4954 143 20 4 chr6 130870060 130870875 -18646162 - Lx3_Mus LINE L1 -388 6621 5794 4 1583 568 0 14 14 chr6 130870875 130870948 -18646089 + (TTC)n Simple_repeat Simple_repeat 2 74 0 4 1583 2922 206 26 17 chr6 130870948 130871604 -18645433 - Lx LINE L1 -15 6639 5978 4 1583 1790 253 87 16 chr6 130871605 130872468 -18644569 + Lx4B LINE L1 5598 6967 -91 4 1583 259 273 6 35 chr6 130872608 130872779 -18644258 + (TA)n Simple_repeat Simple_repeat 1 166 0 4 1583 228 200 0 0 chr6 130872891 130872956 -18644081 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1583 22 0 0 0 chr6 130872996 130873018 -18644019 + AT_rich Low_complexity Low_complexity 1 22 0 4 1583 387 250 38 38 chr6 130873070 130873203 -18643834 + L1_Rod LINE L1 5032 5164 -683 4 1583 8394 137 35 25 chr6 130873202 130875456 -18641581 + L1Md_F2 LINE L1 239 2515 -3368 4 1583 3663 42 5 0 chr6 130875456 130875890 -18641147 - RLTR10C LTR ERVK 0 436 1 4 1583 8001 35 2 0 chr6 130875890 130876824 -18640213 - MMERVK10C-int LTR ERVK 0 7581 6646 4 1583 41139 43 6 1 chr6 130876810 130881726 -18635311 - MMERVK10C-int LTR ERVK -1771 5810 869 4 1583 2594 94 53 3 chr6 130881729 130882103 -18634934 - MMERVK10C-int LTR ERVK -7188 393 1 4 1583 3565 49 9 0 chr6 130882103 130882535 -18634502 - RLTR10C LTR ERVK 0 436 1 4 1583 13123 96 9 1 chr6 130882535 130884450 -18632587 + L1Md_F2 LINE L1 2510 4439 -1444 4 1583 460 70 0 0 chr6 130884449 130884506 -18632531 + L1Md_F2 LINE L1 5529 5585 -298 4 1583 7109 86 3 21 chr6 130884507 130885519 -18631518 + L1Md_F2 LINE L1 5587 6580 -2 4 1583 426 217 126 75 chr6 130885770 130885909 -18631128 + L1_Rod LINE L1 5508 5646 -201 4 1583 336 48 0 0 chr6 130885909 130885951 -18631086 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1583 426 217 126 75 chr6 130885951 130885985 -18631052 + L1_Rod LINE L1 5647 5690 -157 4 1583 261 0 0 0 chr6 130886095 130886124 -18630913 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1583 644 260 90 0 chr6 130887055 130887255 -18629782 + RLTR45 LTR ERVK 265 482 0 4 1583 651 228 20 19 chr6 130887523 130889263 -18627774 - MMSAT4 Satellite Satellite 0 1743 1 4 1583 3113 308 72 30 chr6 130890880 130891135 -18625902 + Lx4A LINE L1 5626 5891 -1159 4 1583 537 80 0 0 chr6 130891135 130891210 -18625827 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1583 4100 266 37 6 chr6 130891210 130892322 -18624715 + Lx4A LINE L1 5892 7058 0 4 1583 743 285 43 53 chr6 130893085 130893478 -18623559 + L1_Mur2 LINE L1 917 1305 -5781 4 1583 1054 270 9 43 chr6 130893501 130893807 -18623230 - ORR1A3 LTR MaLR -33 345 3 4 1583 648 284 54 13 chr6 130893808 130894024 -18623013 + L1_Mur2 LINE L1 5014 5229 -648 4 1583 570 29 0 0 chr6 130894024 130894092 -18622945 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1583 648 284 54 13 chr6 130894092 130894114 -18622923 + L1_Mur2 LINE L1 5230 5262 -615 4 1583 19525 151 8 11 chr6 130894120 130898536 -18618501 + L1VL1 LINE L1 419 4819 -1064 4 1583 265 335 59 73 chr6 130898535 130898822 -18618215 + Lx7 LINE L1 6461 6743 -953 4 1583 5162 227 48 25 chr6 130898823 130901088 -18615949 - Lx2B LINE L1 -3 6997 4665 4 1583 1011 176 0 5 chr6 130901110 130901299 -18615738 + B2_Mm2 SINE B2 1 188 -7 4 1583 1964 189 26 2 chr6 130901338 130901762 -18615275 + L1_Mur1 LINE L1 4194 4627 -1259 4 1583 383 365 9 23 chr6 130901887 130902106 -18614931 + Lx7 LINE L1 6888 7103 -593 4 1583 213 196 0 0 chr6 130902312 130902363 -18614674 + GA-rich Low_complexity Low_complexity 1 51 0 4 1583 369 265 22 22 chr6 130903377 130903516 -18613521 - MurSatRep1 Unknown Unknown -1393 744 606 4 1583 2845 34 42 6 chr6 130904691 130905045 -18611992 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1583 54847 23 20 7 chr6 130905045 130911437 -18605600 + IAPEz-int LTR ERVK 8 6481 0 4 1583 2614 36 92 6 chr6 130911437 130911775 -18605262 + IAPLTR1_Mm LTR ERVK 1 367 0 4 1583 25 75 0 0 chr6 130912594 130912647 -18604390 + AT_rich Low_complexity Low_complexity 1 53 0 4 1583 22 0 0 0 chr6 130913204 130913226 -18603811 + AT_rich Low_complexity Low_complexity 1 22 0 4 1583 1695 246 9 26 chr6 130913241 130913670 -18603367 + Lx4B LINE L1 6432 6853 -205 4 1583 346 191 0 22 chr6 130913741 130913832 -18603205 + L1Md_A LINE L1 6494 6582 0 4 1583 492 376 8 34 chr6 130914145 130914379 -18602658 + B4A SINE B4 2 229 -63 4 1583 210 91 0 0 chr6 130914645 130914678 -18602359 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1583 615 240 47 0 chr6 130915554 130915704 -18601333 + Lx LINE L1 6476 6632 -22 4 1583 1625 16 21 0 chr6 130915802 130915989 -18601048 - B2_Mm1a SINE B2 -2 191 1 4 1583 325 302 40 83 chr6 130916234 130916418 -18600619 + MTEa LTR MaLR 146 349 -30 4 1583 209 252 9 57 chr6 130916786 130916891 -18600146 + GA-rich Low_complexity Low_complexity 3 102 0 4 1583 4982 246 40 33 chr6 130916997 130918376 -18598661 - Lx3C LINE L1 -1 6975 5587 4 1583 16116 139 16 4 chr6 130918395 130922042 -18594995 - Lx3_Mus LINE L1 -189 6820 3129 4 1583 464 260 41 7 chr6 130922026 130922173 -18594864 - L1VL4 LINE L1 -5919 383 232 4 1583 841 243 38 14 chr6 130922173 130922386 -18594651 - MTC LTR MaLR -203 218 1 4 1583 2867 146 16 83 chr6 130922722 130923289 -18593748 - L1_Mus3 LINE L1 0 6638 6110 4 1583 764 255 21 5 chr6 130923289 130923478 -18593559 + Lx2B LINE L1 6620 6811 -189 4 1583 24 0 0 0 chr6 130923540 130923564 -18593473 + AT_rich Low_complexity Low_complexity 1 24 0 4 1583 218 337 29 19 chr6 130926508 130926611 -18590426 + PB1D10 SINE Alu 14 117 0 4 1583 486 314 7 0 chr6 130926958 130927098 -18589939 + B1_Mus2 SINE Alu 7 147 0 4 1583 483 18 0 0 chr6 130927101 130927157 -18589880 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1583 849 311 76 25 chr6 130927201 130927676 -18589361 + Lx8 LINE L1 6310 6808 -665 4 1583 1564 200 29 13 chr6 130927687 130928001 -18589036 - ORR1A4 LTR MaLR -6 323 5 4 1583 4619 192 78 80 chr6 130928007 130928915 -18588122 - ORR1A4-int LTR MaLR -2 1961 1070 4 1583 486 0 0 0 chr6 130928915 130928969 -18588068 + (TAA)n Simple_repeat Simple_repeat 3 56 0 4 1583 4619 192 78 80 chr6 130928969 130929289 -18587748 - ORR1A4-int LTR MaLR -894 1069 735 4 1583 1010 98 7 0 chr6 130929290 130929443 -18587594 + (TTCTC)n Simple_repeat Simple_repeat 2 155 0 4 1583 726 291 71 16 chr6 130930543 130930854 -18586183 - Lx LINE L1 -317 7156 6829 4 1583 1188 204 60 80 chr6 130930864 130931200 -18585837 + ORR1A4 LTR MaLR 1 329 0 4 1583 1187 186 47 0 chr6 130931200 130931436 -18585601 + ORR1A4-int LTR MaLR 1 247 -1716 4 1583 3046 213 24 20 chr6 130931436 130932073 -18584964 - Lx LINE L1 -38 6616 5978 4 1583 1813 256 83 22 chr6 130932065 130933027 -18584010 + Lx4B LINE L1 5589 6741 -317 4 1583 606 262 67 42 chr6 130933038 130933321 -18583716 + L1_Rod LINE L1 3965 4254 -1593 4 1583 224 273 18 29 chr6 130933416 130933586 -18583451 + (TA)n Simple_repeat Simple_repeat 1 168 0 5 1583 233 279 0 11 chr6 130933557 130933644 -18583393 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 5 1583 2860 57 14 3 chr6 130933710 130934063 -18582974 + IAPEY2_LTR LTR ERVK 1 357 0 5 1583 6865 137 19 26 chr6 130934063 130935370 -18581667 + IAPEY3-int LTR ERVK 22 1664 -6016 5 1583 2371 116 8 44 chr6 130935370 130935759 -18581278 + L1Md_F2 LINE L1 6195 6569 -13 5 1583 501 228 77 61 chr6 130935792 130935988 -18581049 + L1_Rod LINE L1 5486 5684 -163 4 1583 700 222 29 26 chr6 130937309 130938431 -18578606 - MMSAT4 Satellite Satellite -13 1125 1 5 1583 5644 244 40 6 chr6 130939960 130940208 -18576829 + Lx4A LINE L1 5629 5876 -1182 5 1583 438 20 0 0 chr6 130940208 130940259 -18576778 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 197 5644 244 40 6 chr6 130940259 130941392 -18575645 + Lx4A LINE L1 5877 7057 -1 5 1584 775 275 59 42 chr6 130942073 130942520 -18574517 + L1_Mur2 LINE L1 533 978 -2562 5 1584 985 276 5 31 chr6 130942522 130942803 -18574234 - ORR1A3 LTR MaLR -59 325 3 5 1584 800 273 12 0 chr6 130942804 130943046 -18573991 + L1_Mur2 LINE L1 5014 5258 -619 5 1584 17418 144 34 57 chr6 130943056 130944251 -18572786 + L1VL1 LINE L1 419 1638 -4245 5 1584 1429 71 10 0 chr6 130944251 130944447 -18572590 + MTA_Mm LTR MaLR 145 342 -54 5 1584 17418 144 34 57 chr6 130944447 130947561 -18569476 + L1VL1 LINE L1 1639 4819 -1064 5 1584 5545 231 27 16 chr6 130947852 130950154 -18566883 - Lx2B LINE L1 0 7000 4658 5 1584 854 178 0 0 chr6 130950170 130950327 -18566710 + B2_Mm2 SINE B2 1 157 -38 5 1584 231 36 0 0 chr6 130950332 130950360 -18566677 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 5 1584 1822 201 36 0 chr6 130950397 130950815 -18566222 + L1_Mur2 LINE L1 4185 4617 -1260 5 1584 21 0 0 0 chr6 130950975 130950996 -18566041 + AT_rich Low_complexity Low_complexity 1 21 0 5 1584 471 118 0 0 chr6 130951363 130951439 -18565598 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 1584 349 285 21 21 chr6 130952430 130952570 -18564467 - MurSatRep1 Unknown Unknown -1392 745 606 5 1584 541 315 14 60 chr6 130952740 130952956 -18564081 + URR1B DNA MER1_type 20 225 0 5 1584 3317 37 2 2 chr6 130953032 130953438 -18563599 + L1Md_T LINE L1 6175 6580 -2 5 1584 24 77 0 0 chr6 130954699 130954751 -18562286 + AT_rich Low_complexity Low_complexity 1 52 0 5 1584 252 0 0 0 chr6 130955283 130955311 -18561726 + (TTA)n Simple_repeat Simple_repeat 1 28 0 5 1584 1351 282 9 26 chr6 130955326 130955755 -18561282 + Lx4B LINE L1 6432 6853 -205 5 1584 601 342 9 34 chr6 130956131 130956364 -18560673 + B4A SINE B4 3 229 -63 5 1584 333 0 0 0 chr6 130956631 130956668 -18560369 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1584 366 405 15 15 chr6 130956725 130956928 -18560109 + ID_B1 SINE B4 19 221 -3 5 1584 253 313 47 24 chr6 130957579 130957664 -18559373 - RSINE1 SINE B4 -11 154 68 5 1584 7929 122 1 0 chr6 130957755 130958978 -18558059 - L1Md_A LINE L1 -722 5161 3938 5 1584 3349 54 0 9 chr6 130958975 130959405 -18557632 + L1Md_A LINE L1 5161 5586 -297 5 1584 8932 7 0 0 chr6 130959405 130960401 -18556636 + L1Md_A LINE L1 5587 6582 0 5 1584 1020 91 21 7 chr6 130960402 130960540 -18556497 + L1_Mm LINE L1 5447 5587 -296 5 1584 6920 92 7 14 chr6 130960540 130961539 -18555498 + L1Md_F2 LINE L1 5588 6579 -3 5 1584 2779 193 17 13 chr6 130961549 130962075 -18554962 + Lx LINE L1 6106 6633 -21 5 1584 280 233 27 27 chr6 130962547 130962622 -18554415 + MTEa LTR MaLR 275 349 -30 5 1584 4086 246 17 77 chr6 130963217 130964484 -18552553 - Lx3C LINE L1 -11 6965 5776 5 1584 2871 41 3 0 chr6 130964487 130964832 -18552205 + ORR1A0 LTR MaLR 1 346 0 5 1584 12638 63 1 1 chr6 130964832 130966539 -18550498 + ORR1A0-int LTR MaLR 1 1706 -86 5 1584 3917 13 0 0 chr6 130966539 130966987 -18550050 + L1Md_A LINE L1 5139 5586 -297 5 1584 8771 15 0 0 chr6 130966987 130967983 -18549054 + L1Md_A LINE L1 5587 6582 0 5 1584 812 10 0 0 chr6 130967983 130968079 -18548958 + ORR1A0-int LTR MaLR 1695 1790 -2 5 1584 2734 56 9 0 chr6 130968082 130968424 -18548613 + ORR1A0 LTR MaLR 2 346 0 5 1584 2606 192 61 24 chr6 130968428 130969063 -18547974 - L1_Mur1 LINE L1 -110 5776 5118 5 1584 465 263 0 0 chr6 130969087 130969262 -18547775 + (TA)n Simple_repeat Simple_repeat 2 176 0 5 1584 512 341 58 10 chr6 130969276 130969483 -18547554 + B4 SINE B4 24 240 -52 5 1584 284 301 0 0 chr6 130969892 130969965 -18547072 - RMER15 LTR ERVL -155 420 348 5 1584 504 310 49 34 chr6 130969983 130970187 -18546850 - RMER15 LTR ERVL -322 253 47 5 1584 2700 180 6 18 chr6 130970350 130970860 -18546177 - Lx LINE L1 0 6654 6151 5 1584 1079 290 82 6 chr6 130970905 130971235 -18545802 + ORR1D1 LTR MaLR 5 359 -15 5 1584 330 167 0 0 chr6 130971509 130971581 -18545456 - L1_Mur1 LINE L1 -2115 3771 3700 5 1584 941 262 17 31 chr6 130971583 130971871 -18545166 + L1_Mur2 LINE L1 5497 5780 -97 5 1584 396 353 34 46 chr6 130972880 130973055 -18543982 - B4 SINE B4 -109 183 11 5 1584 2488 157 9 0 chr6 130973123 130973557 -18543480 - Lx3_Mus LINE L1 -1 7008 6571 5 1584 5503 102 2 7 chr6 130973560 130974372 -18542665 - L1Md_F2 LINE L1 0 6582 5775 5 1584 5907 134 13 6 chr6 130974372 130975391 -18541646 - Lx3_Mus LINE L1 -444 6565 5540 5 1584 309 273 39 39 chr6 130976082 130976185 -18540852 + PB1D10 SINE Alu 14 116 -1 5 1584 577 195 23 47 chr6 130976437 130976566 -18540471 - Lx LINE L1 -115 6858 6733 5 1584 380 278 126 98 chr6 130976641 130977020 -18540017 - RMER13A LTR ERVK -14 613 184 5 1584 8329 176 28 20 chr6 130977021 130977510 -18539527 - L1_Mur2 LINE L1 -2377 3500 3004 5 1584 216 0 0 0 chr6 130977510 130977534 -18539503 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1584 961 102 0 0 chr6 130977541 130977668 -18539369 - B1_Mus2 SINE Alu -18 129 3 5 1584 8329 176 28 20 chr6 130977668 130978609 -18538428 - L1_Mur2 LINE L1 -2874 3003 2046 5 1584 333 0 0 0 chr6 130978609 130978646 -18538391 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1584 8329 176 28 20 chr6 130978646 130979045 -18537992 - L1_Mur2 LINE L1 -3832 2045 1648 5 1584 340 173 0 39 chr6 130979239 130979317 -18537720 - MTC LTR MaLR 0 421 347 5 1584 240 318 144 13 chr6 130979722 130979875 -18537162 - RMER13A LTR ERVK -504 356 184 5 1584 326 164 16 0 chr6 130979875 130979936 -18537101 - L1_Mur2 LINE L1 -2375 3502 3441 5 1584 23 0 0 0 chr6 130979937 130979960 -18537077 + AT_rich Low_complexity Low_complexity 1 23 0 5 1584 6830 134 52 3 chr6 130979960 130981108 -18535929 - Lx3_Mus LINE L1 -16 6993 5789 5 1584 3312 179 33 18 chr6 130981123 130981788 -18535249 - Lx LINE L1 -2 6652 5978 5 1584 1855 271 79 16 chr6 130981789 130982728 -18534309 + Lx4B LINE L1 5598 7037 -21 5 1584 369 0 0 0 chr6 130982728 130982769 -18534268 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 5 1584 5520 52 4 1 chr6 130982821 130983511 -18533526 - L1Md_F2 LINE L1 0 6582 5891 5 1584 483 274 59 35 chr6 130983522 130983776 -18533261 + L1_Rod LINE L1 3995 4254 -1593 5 1584 334 249 17 34 chr6 130983879 130984058 -18532979 + (TA)n Simple_repeat Simple_repeat 2 177 0 5 1584 738 250 263 38 chr6 130984300 130984787 -18532250 + L1_Rod LINE L1 5032 5646 -201 5 1584 342 0 0 0 chr6 130984787 130984825 -18532212 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1584 189 0 0 0 chr6 130984825 130984845 -18532192 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1584 738 250 263 38 chr6 130984845 130984889 -18532148 + L1_Rod LINE L1 5647 5683 -164 5 1584 693 220 26 24 chr6 130986141 130988195 -18528842 - MMSAT4 Satellite Satellite -10 2058 1 5 1584 24 32 0 0 chr6 130989500 130989531 -18527506 + AT_rich Low_complexity Low_complexity 1 31 0 5 1584 1716 224 63 19 chr6 130989789 130990052 -18526985 + Lx4A LINE L1 5629 5889 -1169 5 1584 348 24 0 0 chr6 130990052 130990093 -18526944 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1584 1716 224 63 19 chr6 130990093 130990302 -18526735 + Lx4A LINE L1 5890 6121 -937 5 1584 3346 232 46 1 chr6 130990307 130991050 -18525987 + Lx4A LINE L1 6283 7058 0 5 1584 32 26 0 0 chr6 130991251 130991290 -18525747 + AT_rich Low_complexity Low_complexity 1 39 0 5 1584 880 268 48 64 chr6 130991708 130992285 -18524752 + L1_Mur2 LINE L1 460 1016 -2524 5 1584 1085 229 8 13 chr6 130992287 130992526 -18524511 - ORR1A3 LTR MaLR -86 240 3 5 1584 600 222 221 5 chr6 130992527 130992726 -18524311 + L1_Mur2 LINE L1 5014 5255 -622 5 1584 12492 142 11 9 chr6 130992734 130995769 -18521268 + L1VL1 LINE L1 194 3231 -467 5 1584 3576 147 13 0 chr6 130995746 130996353 -18520684 + L1_Mm LINE L1 4217 4831 -1052 5 1584 364 350 38 56 chr6 130996348 130996635 -18520402 + Lx7 LINE L1 6467 6748 -948 5 1584 5541 223 33 42 chr6 130996633 130998989 -18518048 - Lx2B LINE L1 -1 6999 4646 5 1584 1102 131 27 5 chr6 130998993 130999177 -18517860 + B2_Mm2 SINE B2 1 188 -7 5 1584 1920 205 31 0 chr6 130999193 130999613 -18517424 + L1_Mur2 LINE L1 4185 4617 -1260 5 1584 470 362 31 15 chr6 130999735 130999996 -18517041 + Lx7 LINE L1 6884 7148 -548 5 1584 270 225 0 0 chr6 131000161 131000241 -18516796 + GA-rich Low_complexity Low_complexity 1 80 0 1 1584 956 150 0 0 chr6 131000883 131001030 -18516007 - B1_Mm SINE Alu 0 147 1 2 1584 390 263 21 21 chr6 131001393 131001533 -18515504 - MurSatRep1 Unknown Unknown -1392 745 606 3 1584 381 327 19 0 chr6 131001753 131001915 -18515122 + URR1B DNA MER1_type 60 224 -1 4 1584 1071 109 0 0 chr6 131003342 131003489 -18513548 + B1_Mus1 SINE Alu 2 148 0 5 1584 324 0 0 0 chr6 131004042 131004078 -18512959 + (TAG)n Simple_repeat Simple_repeat 3 38 0 6 1584 3804 84 4 6 chr6 131004141 131004645 -18512392 + RLTR1C LTR ERV1 1 503 0 7 1584 2449 187 5 88 chr6 131004645 131005226 -18511811 + MMERGLN-int LTR ERV1 1 533 -7023 7 1584 234 105 0 0 chr6 131005263 131005301 -18511736 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 8 1584 3325 130 9 8 chr6 131006001 131006528 -18510509 - L1_Mus3 LINE L1 -1 6637 6110 9 1584 705 233 104 0 chr6 131006528 131006730 -18510307 + Lx2B LINE L1 6620 6842 -158 1 1584 2849 104 4 78 chr6 131006816 131007329 -18509708 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1584 57165 19 2 2 chr6 131007329 131013778 -18503259 - IAPEz-int LTR ERVK 0 6481 35 1 1584 2836 106 4 78 chr6 131013788 131014301 -18502736 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1584 244 344 31 12 chr6 131015575 131015677 -18501360 + PB1D10 SINE Alu 14 118 -29 1 1584 304 234 120 9 chr6 131016859 131016967 -18500070 + L1MEd LINE L1 713 832 -5287 1 1584 262 307 29 19 chr6 131016997 131017100 -18499937 + PB1D10 SINE Alu 14 117 0 1 1584 229 267 30 140 chr6 131017686 131017786 -18499251 + MT2B LTR ERVL 176 264 -337 1 1584 186 71 0 0 chr6 131017820 131017848 -18499189 + (TCTA)n Simple_repeat Simple_repeat 4 31 0 1 1584 324 0 0 0 chr6 131017848 131017883 -18499154 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1584 2142 67 116 6 chr6 131017884 131018230 -18498807 + RLTR10 LTR ERVK 6 389 -1 1 1584 279 0 0 0 chr6 131018230 131018261 -18498776 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1584 189 0 0 0 chr6 131018261 131018281 -18498756 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1584 1017 303 66 21 chr6 131018320 131018802 -18498235 + Lx8 LINE L1 6305 6808 -665 2 1584 1583 171 32 16 chr6 131018813 131019127 -18497910 - ORR1A4 LTR MaLR -6 323 5 2 1584 7253 179 81 115 chr6 131019133 131021164 -18495873 - ORR1A4-int LTR MaLR -2 1961 1 2 1584 1177 201 60 80 chr6 131021164 131021500 -18495537 - ORR1A4 LTR MaLR 0 329 1 2 1584 815 281 71 16 chr6 131021510 131021821 -18495216 + Lx8 LINE L1 6829 7156 -317 2 1584 198 167 0 0 chr6 131022913 131022949 -18494088 + GA-rich Low_complexity Low_complexity 2 37 0 2 1584 1074 133 0 0 chr6 131022949 131023122 -18493915 + (GAAAA)n Simple_repeat Simple_repeat 5 177 0 2 1584 459 52 0 0 chr6 131023486 131023544 -18493493 + (TTA)n Simple_repeat Simple_repeat 1 58 0 2 1584 1055 207 30 13 chr6 131023548 131023783 -18493254 - Lx LINE L1 -3 6970 6732 2 1584 8605 179 19 14 chr6 131024216 131025660 -18491377 - L1_Mur2 LINE L1 -2374 3503 2050 2 1584 360 0 0 0 chr6 131025660 131025700 -18491337 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1584 8605 179 19 14 chr6 131025700 131026101 -18490936 - L1_Mur2 LINE L1 -3828 2049 1648 2 1584 2753 55 0 74 chr6 131026170 131026564 -18490473 + RLTR10B2 LTR ERVK 1 365 0 3 1584 363 192 0 14 chr6 131026696 131026770 -18490267 - MTC LTR MaLR -7 414 342 3 1584 343 172 16 0 chr6 131027321 131027385 -18489652 - L1_Mur2 LINE L1 -2372 3505 3441 3 1584 6473 150 54 8 chr6 131027401 131028563 -18488474 - Lx3_Mus LINE L1 -5 7004 5789 3 1584 3126 199 27 14 chr6 131028578 131029244 -18487793 - Lx LINE L1 -2 6652 5978 2 1584 453 148 62 0 chr6 131029245 131029326 -18487711 + Lx5 LINE L1 5598 5683 -1367 3 1584 7207 57 1 2 chr6 131029328 131030226 -18486811 - L1Md_F2 LINE L1 -12 6570 5674 3 1584 1880 263 98 13 chr6 131030226 131031102 -18485935 + Lx4B LINE L1 5670 6981 -19 3 1584 518 282 55 32 chr6 131031144 131031397 -18485640 + L1_Rod LINE L1 3996 4254 -1593 3 1584 261 261 17 9 chr6 131031565 131031681 -18485356 + (TA)n Simple_repeat Simple_repeat 2 118 0 3 1584 306 271 32 6 chr6 131031738 131031894 -18485143 + (TA)n Simple_repeat Simple_repeat 1 160 0 3 1584 501 269 28 28 chr6 131031937 131032113 -18484924 + L1_Rod LINE L1 5032 5207 -640 3 1584 524 272 88 27 chr6 131032166 131032427 -18484610 + L1_Rod LINE L1 5370 5646 -201 3 1584 405 0 0 0 chr6 131032427 131032472 -18484565 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1584 36 0 0 0 chr6 131033223 131033259 -18483778 + AT_rich Low_complexity Low_complexity 1 36 0 4 1584 360 280 35 32 chr6 131033713 131034017 -18483020 - MMSAT4 Satellite Satellite -4 304 1 4 1584 704 214 24 23 chr6 131034069 131035528 -18481509 - MMSAT4 Satellite Satellite -20 1459 1 4 1584 3643 65 8 2 chr6 131036761 131037237 -18479800 - L1Md_F2 LINE L1 -2 6580 6102 4 1584 24 32 0 0 chr6 131037274 131037305 -18479732 + AT_rich Low_complexity Low_complexity 1 31 0 4 1584 1932 244 72 12 chr6 131037563 131037812 -18479225 + Lx4A LINE L1 5629 5876 -1182 4 1584 531 90 0 0 chr6 131037812 131037890 -18479147 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1584 1932 244 72 12 chr6 131037890 131038208 -18478829 + Lx4A LINE L1 5877 6229 -829 4 1584 476 151 0 0 chr6 131038215 131038288 -18478749 + L1Md_Gf LINE L1 265 337 -6282 4 1584 32174 81 1 3 chr6 131038281 131043219 -18473818 + L1Md_Gf LINE L1 563 5589 -297 4 1584 7846 55 8 2 chr6 131043219 131044207 -18472830 + L1Md_F2 LINE L1 5588 6581 -1 4 1584 916 230 0 0 chr6 131044211 131044389 -18472648 + Lx4A LINE L1 6200 6377 -681 4 1584 3227 35 10 0 chr6 131044389 131044784 -18472253 + L1Md_F3 LINE L1 6185 6583 -1 4 1584 781 281 63 48 chr6 131045129 131045570 -18471467 + L1_Mur2 LINE L1 895 1342 -5744 4 1584 992 274 5 20 chr6 131045577 131045862 -18471175 - ORR1A2 LTR MaLR -55 329 1 5 1584 522 274 15 34 chr6 131045862 131046066 -18470971 + L1_Mur2 LINE L1 5015 5214 -663 4 1584 12509 123 7 21 chr6 131046071 131046947 -18470090 + L1VL1 LINE L1 716 1571 -4312 5 1584 1115 82 0 0 chr6 131046947 131047094 -18469943 + B1_Mus2 SINE Alu 1 147 0 5 1584 12509 135 3 41 chr6 131047094 131049000 -18468037 + L1VL1 LINE L1 1572 3406 -2477 5 1584 3597 142 18 8 chr6 131048997 131049616 -18467421 + L1VL1 LINE L1 4195 4819 -1064 5 1584 316 367 34 51 chr6 131049615 131049908 -18467129 + Lx7 LINE L1 6461 6748 -948 5 1584 5635 222 33 42 chr6 131049906 131052262 -18464775 - Lx2B LINE L1 -1 6999 4653 5 1584 1105 112 0 0 chr6 131052273 131052434 -18464603 + B2_Mm2 SINE B2 1 161 -34 5 1584 234 0 0 0 chr6 131052434 131052460 -18464577 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 5 1584 1981 192 26 0 chr6 131052492 131052914 -18464123 + L1_Mur2 LINE L1 4185 4617 -1260 5 1584 382 323 8 0 chr6 131053035 131053159 -18463878 + Lx7 LINE L1 6884 7008 -688 5 1584 218 250 0 0 chr6 131053195 131053243 -18463794 + GA-rich Low_complexity Low_complexity 2 49 0 5 1584 347 272 22 22 chr6 131054228 131054367 -18462670 - MurSatRep1 Unknown Unknown -1393 744 606 5 1584 567 264 18 0 chr6 131054588 131054751 -18462286 + URR1B DNA MER1_type 60 225 0 6 1584 10263 11 0 0 chr6 131055333 131056549 -18460488 + L1Md_A LINE L1 4371 5586 -297 6 1584 8822 14 0 0 chr6 131056549 131057545 -18459492 + L1Md_A LINE L1 5587 6582 0 6 1584 31 58 0 0 chr6 131058658 131058710 -18458327 + AT_rich Low_complexity Low_complexity 1 52 0 6 1584 35965 45 1 6 chr6 131058813 131065251 -18451786 - L1Md_T LINE L1 0 6585 93 6 1584 1704 225 12 21 chr6 131065759 131066181 -18450856 + Lx4B LINE L1 6436 6853 -205 6 1584 2921 180 53 67 chr6 131066357 131067137 -18449900 - L1_Mur1 LINE L1 0 5886 5118 6 1584 345 179 0 0 chr6 131067205 131067289 -18449748 + (CA)n Simple_repeat Simple_repeat 2 85 0 6 1584 524 341 58 10 chr6 131067319 131067526 -18449511 + B4 SINE B4 24 240 -52 6 1584 491 319 56 42 chr6 131067976 131068189 -18448848 - RMER15 LTR ERVL -322 253 38 6 1584 210 265 20 0 chr6 131068320 131068369 -18448668 + (TTG)n Simple_repeat Simple_repeat 1 50 0 6 1584 2772 166 14 10 chr6 131068370 131068862 -18448175 - Lx LINE L1 -10 6644 6151 7 1584 834 304 41 12 chr6 131068992 131069238 -18447799 + ORR1D1 LTR MaLR 107 359 -15 7 1584 278 208 0 0 chr6 131069512 131069584 -18447453 - L1_Mur1 LINE L1 -2115 3771 3700 6 1584 1273 216 0 3 chr6 131069586 131069870 -18447167 + L1_Mur2 LINE L1 5497 5779 -98 7 1584 401 355 19 50 chr6 131070964 131071124 -18445913 - B4 SINE B4 -109 183 29 7 24 16170 123 23 6 chr6 131071209 131075024 -18442013 - Lx3_Mus LINE L1 0 7009 3129 7 1585 522 246 0 0 chr6 131075035 131075157 -18441880 - L1VL4 LINE L1 -5949 353 232 7 1585 797 252 38 14 chr6 131075157 131075370 -18441667 - MTC LTR MaLR -203 218 1 7 1585 3197 128 11 56 chr6 131075710 131076264 -18440773 - L1_Mus3 LINE L1 0 6638 6110 7 1585 1066 160 374 4 chr6 131076265 131076542 -18440495 + Lx2B LINE L1 6621 7000 0 7 1585 970 8 0 16 chr6 131078065 131078186 -18438851 + (GAA)n Simple_repeat Simple_repeat 2 120 0 7 1585 321 252 112 0 chr6 131079031 131079138 -18437899 + L1MEd LINE L1 714 832 -5287 8 1585 328 277 29 19 chr6 131079168 131079271 -18437766 + PB1D10 SINE Alu 14 117 0 8 1585 824 293 107 18 chr6 131079612 131080070 -18436967 + Lx8 LINE L1 6315 6813 -660 8 1585 1027 192 57 26 chr6 131080072 131080302 -18436735 - ORR1A2 LTR MaLR -3 324 88 8 1585 2972 86 0 12 chr6 131080378 131080800 -18436237 + L1Md_F2 LINE L1 6166 6582 0 8 1585 3593 88 0 4 chr6 131081642 131082131 -18434906 + RLTR1C LTR ERV1 1 487 -16 8 1585 726 136 120 8 chr6 131082393 131082526 -18434511 - B1_Mus1 SINE Alu 0 148 1 8 1585 791 64 9 0 chr6 131083536 131083646 -18433391 + (GAGAA)n Simple_repeat Simple_repeat 4 114 0 8 1585 1194 80 0 0 chr6 131083652 131083815 -18433222 + (GGAAA)n Simple_repeat Simple_repeat 3 165 0 8 1585 383 98 16 0 chr6 131084193 131084254 -18432783 + (TTA)n Simple_repeat Simple_repeat 2 63 0 8 1585 1057 203 25 13 chr6 131084259 131084494 -18432543 - Lx3B LINE L1 -3 6970 6733 9 1585 426 301 99 43 chr6 131084648 131084944 -18432093 - RMER13A LTR ERVK -379 529 186 9 1585 8518 166 23 8 chr6 131084945 131086375 -18430662 - L1_Mur2 LINE L1 -2374 3503 2047 9 1585 444 37 0 0 chr6 131086375 131086429 -18430608 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1585 8518 166 23 8 chr6 131086429 131086826 -18430211 - L1_Mur2 LINE L1 -3831 2046 1648 9 1585 398 158 13 26 chr6 131087027 131087105 -18429932 - MTD LTR MaLR 0 419 343 9 1585 1775 207 6 18 chr6 131087126 131087724 -18429313 + L1VL1 LINE L1 1 403 -6019 9 1585 1843 196 12 19 chr6 131087708 131088581 -18428456 + L1VL1 LINE L1 1 435 -5987 9 1585 6173 38 1 4 chr6 131088581 131089326 -18427711 + L1Md_F2 LINE L1 5840 6582 0 9 1585 1754 219 25 22 chr6 131089326 131089801 -18427236 + L1VL1 LINE L1 1 397 -6025 9 1585 1753 200 16 18 chr6 131089809 131091155 -18425882 + L1VL1 LINE L1 1 403 -6019 9 1585 1730 195 11 14 chr6 131091163 131091896 -18425141 + L1VL1 LINE L1 1 391 -6031 9 1585 1824 206 18 20 chr6 131091916 131092896 -18424141 + L1VL1 LINE L1 1 418 -6004 9 1585 30119 112 19 4 chr6 131092877 131098587 -18418450 + L1Md_F2 LINE L1 1 5789 -94 1 1585 336 67 67 0 chr6 131098607 131098667 -18418370 + L1Md_F2 LINE L1 6519 6582 0 1 1585 38 0 0 0 chr6 131098667 131098705 -18418332 + AT_rich Low_complexity Low_complexity 1 38 0 1 1585 234 376 34 17 chr6 131099128 131099247 -18417790 - RMER13A LTR ERVK -556 304 184 1 1585 302 164 16 0 chr6 131099247 131099308 -18417729 - L1_Mur2 LINE L1 -2375 3502 3441 1 1585 6921 130 29 14 chr6 131099318 131100487 -18416550 - Lx3_Mus LINE L1 0 7009 5823 1 1585 1036 79 28 14 chr6 131100517 131100659 -18416378 - B1_Mus2 SINE Alu -1 146 3 1 1585 323 140 0 0 chr6 131100659 131100716 -18416321 - Lx3_Mus LINE L1 -1170 5839 5783 1 1585 3394 158 59 14 chr6 131100729 131101375 -18415662 - Lx LINE L1 -2 6652 5978 1 1585 1302 191 17 27 chr6 131101376 131101677 -18415360 + Lx4B LINE L1 5598 5895 -1163 1 1585 1780 221 222 12 chr6 131101690 131102335 -18414702 + Lx4B LINE L1 6275 7054 -4 1 1585 430 269 90 51 chr6 131102367 131102622 -18414415 + L1_Rod LINE L1 3988 4252 -1595 1 1585 344 271 11 17 chr6 131102726 131102906 -18414131 + (TA)n Simple_repeat Simple_repeat 1 179 0 1 1585 31929 74 3 7 chr6 131102948 131108135 -18408902 + L1Md_F3 LINE L1 446 5588 -295 1 1585 7846 41 10 3 chr6 131108137 131109112 -18407925 + L1Md_F3 LINE L1 5591 6572 -12 1 1585 25457 65 3 1 chr6 131109119 131112945 -18404092 + L1Md_F3 LINE L1 1753 5585 -298 1 1585 8044 39 7 1 chr6 131112946 131113925 -18403112 + L1Md_F3 LINE L1 5587 6571 -13 1 1585 187 212 12 12 chr6 131113976 131114057 -18402980 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 1585 592 261 35 28 chr6 131114154 131114378 -18402659 + L1_Rod LINE L1 5025 5288 -592 1 1585 486 276 114 24 chr6 131114393 131114652 -18402385 + L1_Rod LINE L1 5369 5646 -201 1 1585 375 23 0 0 chr6 131114652 131114696 -18402341 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1585 486 276 114 24 chr6 131114696 131114726 -18402311 + L1_Rod LINE L1 5647 5683 -164 1 1585 673 238 25 24 chr6 131115978 131117359 -18399678 - MMSAT4 Satellite Satellite -10 1382 1 1 1585 24 77 0 0 chr6 131118643 131118695 -18398342 + AT_rich Low_complexity Low_complexity 1 52 0 1 1585 6034 227 48 9 chr6 131118926 131119195 -18397842 + Lx4A LINE L1 5629 5893 -1165 1 1585 992 119 11 11 chr6 131119195 131119374 -18397663 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 1585 6034 227 48 9 chr6 131119374 131120480 -18396557 + Lx4A LINE L1 5894 7057 -1 1 1585 24 0 0 0 chr6 131120717 131120741 -18396296 + AT_rich Low_complexity Low_complexity 1 24 0 1 1585 952 264 54 34 chr6 131121212 131121715 -18395322 + L1_Mur2 LINE L1 885 1389 -4488 1 1585 1059 244 0 21 chr6 131121718 131121961 -18395076 - ORR1A2 LTR MaLR -87 240 3 1 1585 883 256 12 0 chr6 131121962 131122208 -18394829 + L1_Mur2 LINE L1 5014 5262 -615 1 1585 13289 132 9 4 chr6 131122204 131125218 -18391819 + L1VL1 LINE L1 403 3429 -2454 1 1585 1239 137 5 0 chr6 131125213 131125424 -18391613 + L1VL1 LINE L1 4212 4423 -1460 1 1585 1698 37 9 9 chr6 131125427 131125643 -18391394 + L1Md_F2 LINE L1 6354 6569 -13 1 1585 2494 114 18 3 chr6 131125656 131126043 -18390994 + L1VL1 LINE L1 4427 4819 -1064 1 1585 411 321 55 58 chr6 131126042 131126333 -18390704 + Lx7 LINE L1 6461 6750 -946 1 1585 5527 219 39 39 chr6 131126329 131128656 -18388381 - Lx2B LINE L1 0 7000 4653 1 1585 1021 137 0 0 chr6 131128668 131128829 -18388208 + B2_Mm2 SINE B2 1 161 -34 1 1585 237 33 0 0 chr6 131128829 131128859 -18388178 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1 1585 3246 80 0 11 chr6 131128907 131129352 -18387685 - L1Md_F2 LINE L1 -4 6578 6139 1 1585 1954 194 36 0 chr6 131129366 131129784 -18387253 + L1_Mur2 LINE L1 4185 4617 -1260 1 1585 559 354 31 15 chr6 131129908 131130169 -18386868 + Lx7 LINE L1 6884 7148 -548 1 1585 195 204 0 0 chr6 131130338 131130387 -18386650 + GA-rich Low_complexity Low_complexity 1 49 0 1 1585 334 313 0 0 chr6 131131393 131131508 -18385529 - MurSatRep1 Unknown Unknown -1392 745 631 1 1585 470 265 24 18 chr6 131131755 131131920 -18385117 + URR1B DNA MER1_type 60 225 0 1 1585 33852 75 6 3 chr6 131133033 131139192 -18377845 - L1Md_F2 LINE L1 -14 6568 392 1 1585 183 42 0 0 chr6 131139946 131139970 -18377067 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1 1585 1978 223 5 9 chr6 131139988 131140409 -18376628 + Lx4B LINE L1 6435 6853 -205 1 1585 614 346 9 31 chr6 131140695 131140919 -18376118 + B4A SINE B4 2 220 -72 1 1585 240 432 17 0 chr6 131140943 131141061 -18375976 + RSINE1 SINE B4 45 164 -1 1 1585 1052 116 0 0 chr6 131141119 131141266 -18375771 + B1_Mus1 SINE Alu 2 148 0 1 1585 435 68 0 0 chr6 131141361 131141420 -18375617 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1585 364 377 17 17 chr6 131141502 131141680 -18375357 + ID_B1 SINE B4 44 221 -3 1 1585 2706 101 64 7 chr6 131142276 131142684 -18374353 - L1_Mus1 LINE L1 -2 6565 6135 1 1585 777 88 0 0 chr6 131142684 131142797 -18374240 + L1_Mus1 LINE L1 6452 6564 -3 1 1585 2063 179 30 7 chr6 131142810 131143216 -18373821 + Lx2 LINE L1 6583 6997 0 1 1585 338 0 0 23 chr6 131143418 131143461 -18373576 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1 1585 4101 89 2 7 chr6 131143461 131144026 -18373011 - L1Md_F2 LINE L1 -40 6542 5981 1 1585 5712 69 0 4 chr6 131144025 131144771 -18372266 + L1_Mm LINE L1 4475 5217 -666 1 1585 340 268 46 11 chr6 131145032 131145119 -18371918 + MTEa LTR MaLR 260 349 -30 1 1585 186 87 21 42 chr6 131145490 131145538 -18371499 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1 1585 5699 217 36 23 chr6 131145693 131147530 -18369507 - Lx3C LINE L1 -4 6972 5118 1 1585 311 239 19 31 chr6 131147533 131147681 -18369356 + (TA)n Simple_repeat Simple_repeat 2 147 0 1 1585 318 26 0 0 chr6 131147681 131147720 -18369317 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1585 311 239 19 31 chr6 131147720 131147731 -18369306 + (TA)n Simple_repeat Simple_repeat 1 11 0 1 1585 493 353 58 10 chr6 131147746 131147952 -18369085 + B4 SINE B4 25 240 -52 1 1585 457 335 68 30 chr6 131148361 131148665 -18368372 - RMER15 LTR ERVL -155 420 38 1 1585 1154 128 6 0 chr6 131148688 131148867 -18368170 - Lx3B LINE L1 -192 6781 6602 1 1585 22 56 0 0 chr6 131148940 131148976 -18368061 + AT_rich Low_complexity Low_complexity 1 36 0 1 1585 287 353 22 22 chr6 131149020 131149159 -18367878 + ID_B1 SINE B4 85 223 -1 1 1585 298 320 93 8 chr6 131150127 131150256 -18366781 + B1_Mur3 SINE Alu 4 143 -6 1 1585 11437 93 5 1 chr6 131150689 131152351 -18364686 + L1_Mm LINE L1 1919 3588 -2295 1 1585 1292 166 66 12 chr6 131152351 131152657 -18364380 + IAPLTR4 LTR ERVK 1 332 0 1 1585 11876 44 7 18 chr6 131152657 131154206 -18362831 + IAPLTR4_I LTR ERVK 22 1470 0 1 1585 1556 199 119 42 chr6 131154317 131154833 -18362204 + RMER16-int LTR ERVK 221 668 -5469 1 1585 521 204 88 0 chr6 131154836 131154949 -18362088 + RMER16-int LTR ERVK 938 1060 -5077 1 1585 315 267 0 55 chr6 131154962 131155053 -18361984 + ETnERV3-int LTR ERVK 2454 2539 -4867 1 1585 6908 109 40 12 chr6 131155066 131156452 -18360585 + ETnERV3-int LTR ERVK 2736 4271 -3135 1 1585 481 220 8 8 chr6 131156457 131156576 -18360461 + MMETn-int LTR ERVK 2357 2475 -2369 1 1585 6205 241 44 33 chr6 131156645 131159659 -18357378 + ETnERV3-int LTR ERVK 4556 7329 -351 1 1585 1354 154 152 10 chr6 131159659 131159961 -18357076 + IAPLTR4 LTR ERVK 1 345 0 1 1585 14449 83 4 8 chr6 131159964 131161114 -18355923 + L1Md_F2 LINE L1 3583 4731 -1152 1 1585 354 23 0 0 chr6 131161114 131161157 -18355880 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1585 14449 83 4 8 chr6 131161157 131162017 -18355020 + L1Md_F2 LINE L1 4732 5586 -297 1 1585 7763 62 1 2 chr6 131162017 131163004 -18354033 + L1Md_F2 LINE L1 5587 6572 -10 1 1585 29 0 0 0 chr6 131163004 131163033 -18354004 + AT_rich Low_complexity Low_complexity 1 29 0 1 1585 1108 87 46 6 chr6 131163033 131163207 -18353830 - B2_Mm2 SINE B2 -14 181 1 1 1585 269 321 12 0 chr6 131163210 131163294 -18353743 - Lx8 LINE L1 -1152 6321 6237 1 1585 2210 244 11 9 chr6 131164540 131164944 -18352093 - Lx8 LINE L1 -130 5750 5347 1 1585 3988 148 23 25 chr6 131164944 131165637 -18351400 + RLTR17 LTR ERVK 1 692 0 1 1585 2210 244 11 9 chr6 131165637 131165803 -18351234 - Lx8 LINE L1 -534 5346 5179 1 1585 2351 256 52 21 chr6 131165798 131165844 -18351193 + Lx7 LINE L1 6127 6191 -1505 1 1585 441 0 0 0 chr6 131165844 131165893 -18351144 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1 1585 2351 256 52 21 chr6 131165893 131166516 -18350521 + Lx7 LINE L1 6192 6816 -880 1 1585 1967 262 38 138 chr6 131166517 131167313 -18349724 - RMER1B Other Other -197 869 154 1 1585 862 295 21 10 chr6 131167328 131167619 -18349418 - RMER1B Other Other -708 358 65 1 1585 351 268 74 33 chr6 131167820 131168063 -18348974 + Lx7 LINE L1 7444 7696 0 1 1585 1827 252 5 20 chr6 131168297 131168706 -18348331 - MTC LTR MaLR -2 419 17 1 1585 1366 109 0 5 chr6 131169041 131169235 -18347802 + B2_Mm2 SINE B2 3 195 0 1 1585 186 43 0 0 chr6 131169280 131169303 -18347734 + (CAT)n Simple_repeat Simple_repeat 2 24 0 1 1585 289 268 0 0 chr6 131169317 131169388 -18347649 - B1F SINE Alu -15 134 64 1 1585 441 66 0 0 chr6 131169510 131169571 -18347466 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1585 201 74 0 0 chr6 131169571 131169598 -18347439 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 1 1585 388 338 34 0 chr6 131170453 131170601 -18346436 + RSINE1 SINE B4 3 155 -10 1 1585 21 0 0 0 chr6 131171024 131171045 -18345992 + AT_rich Low_complexity Low_complexity 1 21 0 1 1585 2535 205 8 17 chr6 131171045 131171576 -18345461 + Lx5 LINE L1 6239 6764 -286 1 1585 322 341 54 0 chr6 131171717 131171846 -18345191 + ID_B1 SINE B4 85 220 -4 1 1585 547 285 8 0 chr6 131172315 131172438 -18344599 + RMER20B LTR ERVK 1 124 -503 1 1585 7369 60 1 1 chr6 131172438 131173856 -18343181 - L1Md_F2 LINE L1 -3 6579 5162 1 1585 4656 59 7 0 chr6 131173899 131174491 -18342546 - L1Md_F2 LINE L1 -2 6580 5985 1 1585 4801 55 2 0 chr6 131174491 131175122 -18341915 + L1Md_F2 LINE L1 5235 5866 -17 1 1585 15265 76 1 1 chr6 131175122 131177257 -18339780 - L1Md_F2 LINE L1 -695 5188 3054 1 1585 5933 58 1 3 chr6 131177257 131178004 -18339033 + L1Md_F2 LINE L1 5825 6570 -12 1 1585 544 108 9 43 chr6 131178008 131178124 -18338913 + L1Md_F2 LINE L1 6470 6581 -1 1 1585 218 219 16 0 chr6 131178528 131178592 -18338445 + (TTAA)n Simple_repeat Simple_repeat 3 67 0 1 1585 1197 130 16 5 chr6 131179057 131179251 -18337786 + Lx3B LINE L1 6778 6973 0 1 1585 27 49 0 0 chr6 131179255 131179296 -18337741 + AT_rich Low_complexity Low_complexity 1 41 0 1 1585 230 345 71 33 chr6 131179363 131179546 -18337491 - Charlie21a DNA MER1_type -534 679 490 1 1585 235 365 33 57 chr6 131180478 131180490 -18336547 + ID_B1 SINE B4 77 192 -29 1 1585 312 362 19 19 chr6 131180490 131180597 -18336440 + PB1D7 SINE Alu 4 110 -10 1 1585 375 247 0 0 chr6 131180606 131180679 -18336358 + B1F SINE Alu 66 138 -11 1 1585 244 254 79 14 chr6 131180886 131181026 -18336011 + L1MB1 LINE L1 5845 5993 -175 1 1585 256 287 34 77 chr6 131181341 131181458 -18335579 - B1F SINE Alu -1 148 37 1 1585 2763 191 89 9 chr6 131182264 131183346 -18333691 + L1_Mur2 LINE L1 901 2060 -3817 1 1585 4353 131 32 85 chr6 131183347 131184198 -18332839 + RLTR13D1 LTR ERVK 1 806 0 2 1585 6115 162 19 5 chr6 131184200 131185445 -18331592 + L1_Mur2 LINE L1 2050 3312 -2565 1 1585 34123 51 1 16 chr6 131185436 131190589 -18326448 + L1Md_T LINE L1 514 5586 -297 2 1585 7580 72 0 4 chr6 131190589 131191587 -18325450 + L1Md_T LINE L1 5587 6580 -2 2 1585 553 273 92 5 chr6 131191590 131191785 -18325252 - Lx8 LINE L1 -251 7222 7011 2 1585 31 0 0 0 chr6 131191810 131191841 -18325196 + AT_rich Low_complexity Low_complexity 1 31 0 2 1585 390 90 15 0 chr6 131192247 131192314 -18324723 + Lx5 LINE L1 6300 6367 -683 2 1585 306 0 0 0 chr6 131192384 131192418 -18324619 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1585 240 310 69 0 chr6 131194222 131194309 -18322728 - PB1D10 SINE Alu -24 93 1 2 1585 575 250 33 19 chr6 131195984 131196196 -18320841 + Lx9 LINE L1 5809 6023 -1621 2 1585 24 67 0 0 chr6 131196343 131196388 -18320649 + AT_rich Low_complexity Low_complexity 1 45 0 2 1585 420 20 0 0 chr6 131196514 131196563 -18320474 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1585 780 159 14 14 chr6 131196614 131196754 -18320283 - B1_Mur3 SINE Alu -1 148 9 2 1585 255 61 0 0 chr6 131196814 131196847 -18320190 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2 1585 354 289 33 60 chr6 131196854 131197005 -18320032 - RSINE1 SINE B4 -17 148 2 2 1585 27427 71 4 0 chr6 131197786 131202280 -18314757 - L1Md_F2 LINE L1 0 6582 2071 2 1585 192 40 0 0 chr6 131202970 131202995 -18314042 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1586 183 42 0 0 chr6 131204151 131204175 -18312862 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1586 235 260 13 0 chr6 131204608 131204685 -18312352 + (CGG)n Simple_repeat Simple_repeat 2 79 0 2 1586 5732 124 4 13 chr6 131204713 131206343 -18310694 - L1Md_F2 LINE L1 -3800 2083 481 2 1586 229 364 0 25 chr6 131206442 131206521 -18310516 - ID4 SINE ID -2 81 5 2 1586 324 341 0 0 chr6 131206596 131206678 -18310359 - PB1D10 SINE Alu -24 93 12 2 1586 186 43 0 0 chr6 131207541 131207564 -18309473 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1586 502 231 78 50 chr6 131207717 131207858 -18309179 + B1_Mur2 SINE Alu 5 149 0 2 1586 1747 79 22 1 chr6 131207861 131208158 -18308879 + L1Md_F2 LINE L1 5262 5585 -298 2 1586 7831 57 6 5 chr6 131208159 131209142 -18307895 + L1Md_F2 LINE L1 5587 6570 -12 2 1586 5249 60 0 0 chr6 131210168 131210823 -18306214 - L1_Mus1 LINE L1 -1 6566 5912 2 1586 1853 28 121 0 chr6 131210824 131211072 -18305965 + L1_Mus1 LINE L1 5629 5906 -661 2 1586 281 270 0 39 chr6 131211373 131211450 -18305587 + B1_Mm SINE Alu 70 143 -4 2 1586 258 289 58 50 chr6 131211576 131211696 -18305341 + MLT1A1 LTR MaLR 288 408 0 2 1586 1142 263 49 52 chr6 131211805 131212134 -18304903 + MTE2b LTR MaLR 52 379 0 2 1586 2725 207 90 6 chr6 131212894 131213515 -18303522 - Lx5 LINE L1 -3 7047 6375 2 1586 688 214 143 17 chr6 131213492 131213730 -18303307 - Lx5 LINE L1 -784 6266 5999 2 1586 390 100 0 0 chr6 131213776 131213836 -18303201 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1586 850 161 0 11 chr6 131214495 131214677 -18302360 + CT-rich Low_complexity Low_complexity 1 180 0 2 1586 456 291 45 0 chr6 131214800 131214934 -18302103 - ID_B1 SINE B4 -1 223 84 2 1586 454 338 13 0 chr6 131215186 131215337 -18301700 + B3 SINE B2 2 154 -62 2 1586 1884 42 0 0 chr6 131215339 131215575 -18301462 + L1Md_F2 LINE L1 5351 5586 -297 2 1586 7843 58 8 3 chr6 131215575 131216564 -18300473 + L1Md_F2 LINE L1 5587 6580 -2 2 1586 633 141 123 15 chr6 131216642 131216772 -18300265 - MTC LTR MaLR -277 144 1 2 1586 311 302 109 55 chr6 131216897 131217153 -18299884 + L1MC4 LINE L1 7562 7831 -211 2 1586 422 120 0 13 chr6 131217170 131217246 -18299791 + (TTA)n Simple_repeat Simple_repeat 1 75 0 2 1586 1182 68 0 0 chr6 131217654 131217800 -18299237 - B1_Mus1 SINE Alu -2 146 1 2 1586 228 81 0 0 chr6 131218087 131218124 -18298913 + L1_Mm LINE L1 5226 5262 -621 2 1586 2622 54 0 3 chr6 131218466 131218819 -18298218 - L1_Mus2 LINE L1 -493 6073 5722 2 1586 3958 52 4 36 chr6 131218819 131219341 -18297696 + L1_Mus2 LINE L1 6062 6566 0 2 1586 333 0 0 0 chr6 131219388 131219425 -18297612 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2 1586 404 269 63 47 chr6 131221374 131221565 -18295472 + Lx9 LINE L1 5809 6002 -1642 2 1586 471 260 14 64 chr6 131221969 131222109 -18294928 - RSINE1 SINE B4 -31 134 2 2 1586 381 299 133 8 chr6 131223089 131223217 -18293820 - B1F1 SINE Alu 0 149 6 2 1586 1097 193 19 67 chr6 131223634 131223901 -18293136 + RMER5 LTR ERV1 15 268 -266 2 1586 499 167 296 0 chr6 131223915 131224023 -18293014 + RMER5 LTR ERV1 393 532 -2 2 1586 240 122 0 0 chr6 131224198 131224239 -18292798 + (CTA)n Simple_repeat Simple_repeat 1 41 0 2 1586 22 35 0 0 chr6 131224720 131224749 -18292288 + AT_rich Low_complexity Low_complexity 1 29 0 2 1586 468 309 26 7 chr6 131224749 131224902 -18292135 - RSINE1 SINE B4 -8 157 2 2 1586 396 0 0 0 chr6 131225030 131225074 -18291963 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1586 631 179 8 57 chr6 131225479 131225603 -18291434 - B1_Mur1 SINE Alu 0 149 32 2 1586 223 306 78 12 chr6 131226922 131227023 -18290014 + L2a LINE L2 3228 3377 -49 2 1586 265 62 42 0 chr6 131227244 131227292 -18289745 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 2 1586 21706 105 30 5 chr6 131227971 131232241 -18284796 + L1_Mus2 LINE L1 2211 6564 -2 2 1586 595 264 184 0 chr6 131232342 131232505 -18284532 + B3 SINE B2 1 193 -23 2 1586 395 300 53 15 chr6 131232718 131232850 -18284187 - ID_B1 SINE B4 -8 216 80 2 1586 405 0 0 0 chr6 131233255 131233300 -18283737 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1586 503 225 18 26 chr6 131233664 131233778 -18283259 + B1_Mur2 SINE Alu 1 113 -36 2 1586 210 143 0 0 chr6 131233780 131233815 -18283222 + (GAA)n Simple_repeat Simple_repeat 2 36 0 2 1586 221 0 0 33 chr6 131234131 131234161 -18282876 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1586 22 0 0 0 chr6 131234608 131234630 -18282407 + AT_rich Low_complexity Low_complexity 1 22 0 2 1586 606 230 22 0 chr6 131235874 131236009 -18281028 + B1F2 SINE Alu 4 141 -8 2 1586 256 107 54 0 chr6 131238542 131238598 -18278439 + L1_Mus3 LINE L1 6575 6633 -5 2 1586 304 348 36 61 chr6 131238667 131238832 -18278205 + RSINE1 SINE B4 5 165 0 2 1586 1220 48 0 0 chr6 131238866 131239013 -18278024 + B1_Mus1 SINE Alu 2 148 0 2 1586 180 0 0 0 chr6 131239013 131239033 -18278004 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1586 501 120 31 42 chr6 131239175 131239271 -18277766 + B1_Mur2 SINE Alu 43 137 -12 2 1586 588 65 0 0 chr6 131239271 131239348 -18277689 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 2 1586 298 0 0 45 chr6 131239660 131239704 -18277333 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 2 1586 365 266 10 69 chr6 131239704 131239805 -18277232 - PB1D9 SINE Alu -11 109 15 2 1586 213 289 46 102 chr6 131239712 131239820 -18277217 - ID_B1 SINE B4 -45 179 78 2 1586 33 43 0 0 chr6 131240501 131240548 -18276489 + AT_rich Low_complexity Low_complexity 1 47 0 2 1586 874 186 21 11 chr6 131240551 131240741 -18276296 + B2_Mm2 SINE B2 2 193 -2 2 1586 534 103 0 0 chr6 131240742 131240820 -18276217 + (GAAAA)n Simple_repeat Simple_repeat 3 80 0 2 1586 303 225 190 4 chr6 131241313 131241393 -18275644 - PB1D9 SINE Alu -12 136 21 2 1586 1081 52 15 0 chr6 131241393 131241528 -18275509 + B1_Mus2 SINE Alu 1 137 -10 2 1586 224 284 30 50 chr6 131241528 131241547 -18275490 - B1_Mus1 SINE Alu -88 60 40 2 1586 618 156 18 18 chr6 131242844 131242955 -18274082 + PB1D10 SINE Alu 5 115 -2 2 1586 468 0 0 0 chr6 131242981 131243033 -18274004 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1586 213 39 0 0 chr6 131243384 131243410 -18273627 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1586 185 212 162 29 chr6 131244625 131244693 -18272344 + MIRc SINE MIR 60 136 -132 2 1586 271 306 0 105 chr6 131245365 131245460 -18271577 - MER81 DNA AcHobo -1 113 29 2 1586 1557 68 64 0 chr6 131245713 131245933 -18271104 - L1_Mus3 LINE L1 0 6638 6405 2 1586 363 207 46 76 chr6 131246120 131246251 -18270786 + MER3 DNA MER1_type 83 209 0 2 1586 254 154 74 37 chr6 131246619 131246673 -18270364 - PB1D7 SINE Alu 0 120 65 2 1586 421 273 48 91 chr6 131246625 131246790 -18270247 - ID_B1 SINE B4 -4 220 63 2 1586 686 267 55 0 chr6 131247614 131247779 -18269258 + B3A SINE B2 1 174 -24 2 1586 558 307 60 64 chr6 131247966 131248248 -18268789 - B4A SINE B4 -11 281 1 2 1586 305 250 29 0 chr6 131248936 131249004 -18268033 + BC1_Mm scRNA scRNA 19 88 -64 2 1586 292 300 117 0 chr6 131249171 131249291 -18267746 - MIRb SINE MIR -6 262 129 2 1586 478 118 0 21 chr6 131251049 131251144 -18265893 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 1586 344 252 96 118 chr6 131251336 131251471 -18265566 + MTE2b LTR MaLR 248 379 0 2 1586 1081 82 0 0 chr6 131253211 131253357 -18263680 + B1_Mus2 SINE Alu 1 146 -1 2 1586 185 0 0 39 chr6 131253357 131253383 -18263654 + (TAA)n Simple_repeat Simple_repeat 2 26 0 2 1586 359 266 43 0 chr6 131253451 131253545 -18263492 + PB1D7 SINE Alu 18 115 -5 2 1586 453 275 33 72 chr6 131253554 131253707 -18263330 + B1_Mur2 SINE Alu 3 149 0 2 1586 757 250 0 0 chr6 131253781 131253925 -18263112 + B1_Mus1 SINE Alu 1 144 -4 2 1586 347 234 0 0 chr6 131254087 131254151 -18262886 + B1F2 SINE Alu 3 66 -83 2 1586 678 291 13 14 chr6 131254260 131254447 -18262590 + B3A SINE B2 1 186 -30 2 1586 298 305 24 12 chr6 131255147 131255230 -18261807 - ID SINE ID -139 85 2 2 1586 237 178 89 0 chr6 131256226 131256271 -18260766 + ID2 SINE ID 28 76 -7 2 1586 411 21 0 0 chr6 131256274 131256322 -18260715 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1586 447 232 150 9 chr6 131257302 131257415 -18259622 + RSINE1 SINE B4 4 132 -33 2 1586 434 104 0 25 chr6 131257422 131257501 -18259536 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 2 1586 879 275 0 10 chr6 131257554 131257763 -18259274 - B3 SINE B2 -2 214 8 3 1586 682 201 193 18 chr6 131258596 131258824 -18258213 - Lx9 LINE L1 -8 7636 7369 3 1586 25 0 0 0 chr6 131259107 131259132 -18257905 + AT_rich Low_complexity Low_complexity 1 25 0 3 1586 877 183 0 0 chr6 131259157 131259299 -18257738 + B1_Mur3 SINE Alu 2 143 -6 3 1586 281 333 80 37 chr6 131259372 131259534 -18257503 - MER3 DNA MER1_type -1 208 40 3 1586 687 231 113 0 chr6 131259540 131259735 -18257302 - ID_B1 SINE B4 -7 217 1 3 1586 352 365 129 14 chr6 131261868 131262222 -18254815 - L2a LINE L2 -192 3234 2839 3 1586 702 103 10 0 chr6 131263647 131263744 -18253293 - B1_Mur4 SINE Alu -12 138 41 3 1586 300 171 24 84 chr6 131263670 131263753 -18253284 - RLTR25B LTR ERVK -520 508 431 3 1586 371 286 41 16 chr6 131263870 131263991 -18253046 + B1F SINE Alu 11 134 -15 3 1586 374 188 111 30 chr6 131264046 131264204 -18252833 - L1MD2 LINE L1 -221 6021 5846 3 1586 317 288 218 54 chr6 131264607 131264754 -18252283 + B4A SINE B4 2 172 -120 3 1586 29 0 0 0 chr6 131265124 131265153 -18251884 + AT_rich Low_complexity Low_complexity 1 29 0 3 1586 234 59 13 93 chr6 131265705 131265780 -18251257 + A-rich Low_complexity Low_complexity 2 70 0 3 1586 789 138 0 0 chr6 131265955 131266078 -18250959 + B1_Mur4 SINE Alu 28 150 0 3 1586 212 154 19 0 chr6 131266119 131266171 -18250866 + GA-rich Low_complexity Low_complexity 2 54 0 3 1586 357 325 46 13 chr6 131266895 131267048 -18249989 + RSINE1 SINE B4 4 161 -4 3 1586 198 0 0 0 chr6 131267064 131267086 -18249951 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 3 1586 22 35 0 0 chr6 131267660 131267689 -18249348 + AT_rich Low_complexity Low_complexity 1 29 0 3 1586 459 125 0 0 chr6 131267828 131267900 -18249137 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1586 291 154 0 0 chr6 131269238 131269303 -18247734 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1586 324 0 0 0 chr6 131269573 131269609 -18247428 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 1586 270 0 0 0 chr6 131269609 131269638 -18247399 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1586 4351 72 9 2 chr6 131270460 131271029 -18246008 - L1_Mus3 LINE L1 0 6638 6066 3 1586 550 211 0 205 chr6 131271438 131271623 -18245414 + B1_Mur2 SINE Alu 1 147 -2 3 1586 692 172 7 0 chr6 131271809 131271954 -18245083 + CT-rich Low_complexity Low_complexity 1 146 0 3 1586 959 252 5 5 chr6 131272836 131273051 -18243986 - B3 SINE B2 0 216 2 3 1586 941 59 0 0 chr6 131273314 131273432 -18243605 + B1_Mus1 SINE Alu 26 143 -5 3 1586 625 265 0 0 chr6 131274208 131274344 -18242693 - B1_Mur1 SINE Alu -13 136 1 3 1586 397 280 0 0 chr6 131274374 131274474 -18242563 + PB1D9 SINE Alu 16 115 -5 3 1586 8051 121 21 28 chr6 131275016 131276389 -18240648 + Lx3B LINE L1 5604 6966 -7 3 1586 249 33 0 0 chr6 131276403 131276433 -18240604 + (CTA)n Simple_repeat Simple_repeat 3 32 0 3 1586 270 0 0 0 chr6 131276433 131276463 -18240574 + (TAA)n Simple_repeat Simple_repeat 1 30 0 3 1586 755 232 67 5 chr6 131276481 131276676 -18240361 + ID_B1 SINE B4 1 207 -17 3 1586 211 299 90 13 chr6 131276704 131276782 -18240255 + B4A SINE B4 2 85 -207 3 1586 224 200 183 0 chr6 131276754 131276814 -18240223 + RSINE1 SINE B4 57 127 -38 3 1586 281 26 26 0 chr6 131276881 131276919 -18240118 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 3 1586 422 296 26 0 chr6 131277995 131278110 -18238927 - ID_B1 SINE B4 -2 222 105 3 1586 308 263 43 9 chr6 131278752 131278867 -18238170 + PB1D7 SINE Alu 1 119 -1 3 1586 598 122 17 34 chr6 131279153 131279272 -18237765 - RMER1C Other Other -7 1335 1219 3 1586 4468 41 0 8 chr6 131279279 131279815 -18237222 + L1Md_F2 LINE L1 5055 5586 -297 3 1586 8288 36 7 0 chr6 131279815 131280791 -18236246 + L1Md_F2 LINE L1 5587 6569 -13 3 1586 31 58 0 0 chr6 131280843 131280895 -18236142 + AT_rich Low_complexity Low_complexity 1 52 0 3 1586 182 191 21 0 chr6 131280926 131280973 -18236064 + CT-rich Low_complexity Low_complexity 1 48 0 3 1586 1013 149 40 0 chr6 131280976 131281150 -18235887 - RMER1C Other Other -136 1206 1026 3 1586 587 292 145 28 chr6 131281175 131281562 -18235475 + RLTR12B LTR ERVK 47 478 -50 3 1586 1512 165 59 2 chr6 131281890 131282173 -18234864 - Lx5 LINE L1 -1264 5786 5487 3 1586 1945 190 27 31 chr6 131282173 131282618 -18234419 + Lx5 LINE L1 5787 6229 -821 3 1586 1005 268 27 62 chr6 131282873 131283211 -18233826 + MYSERV-int LTR ERVK 3775 4100 -2450 3 1586 1214 174 35 0 chr6 131283242 131283472 -18233565 + L1_Mur2 LINE L1 3662 3899 -1978 3 1586 2688 251 92 28 chr6 131283475 131284412 -18232625 + MYSERV-int LTR ERVK 4208 5169 -91 3 1586 413 271 66 22 chr6 131284414 131284595 -18232442 + RMER4A LTR ERVK 247 435 -31 3 1586 720 233 53 40 chr6 131284635 131285162 -18231875 - RMER17C LTR ERVK 0 410 1 3 1586 5281 176 21 50 chr6 131285199 131286308 -18230729 + MYSERV6-int LTR ERVK 7848 8924 -35 3 1586 825 306 62 31 chr6 131286377 131286829 -18230208 + RLTR12B LTR ERVK 49 514 -14 3 1586 7587 122 14 3 chr6 131286918 131288769 -18228268 - Lx LINE L1 -5 6649 4778 3 1586 1154 232 13 13 chr6 131288768 131289004 -18228033 - RMER1C Other Other -369 973 738 3 1586 363 78 0 0 chr6 131289011 131289062 -18227975 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1586 341 274 102 31 chr6 131289233 131289361 -18227676 + B1F SINE Alu 12 148 -1 3 1586 234 0 0 0 chr6 131289372 131289398 -18227639 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1586 527 279 84 98 chr6 131289830 131289927 -18227110 - L1MB7 LINE L1 -37 6147 6055 3 1586 909 184 129 5 chr6 131289927 131290113 -18226924 + B3 SINE B2 2 210 -6 3 1586 527 279 84 98 chr6 131290113 131290384 -18226653 - L1MB7 LINE L1 -130 6054 5784 3 1586 256 77 39 0 chr6 131290567 131290619 -18226418 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1586 382 264 0 11 chr6 131290726 131290814 -18226223 - RSINE1 SINE B4 -49 116 30 3 1586 359 291 48 0 chr6 131290835 131290938 -18226099 - L1MB5 LINE L1 -41 6133 6026 3 1586 2181 191 38 56 chr6 131291557 131291914 -18225123 + RLTR16 LTR ERVK 1 354 -151 3 1586 962 90 0 33 chr6 131291914 131292064 -18224973 - L1_Mus1 LINE L1 0 6567 6423 3 1586 2181 191 38 56 chr6 131292064 131292125 -18224912 + RLTR16 LTR ERVK 355 413 -92 3 1586 396 0 0 0 chr6 131292125 131292169 -18224868 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1586 2181 191 38 56 chr6 131292169 131292249 -18224788 + RLTR16 LTR ERVK 414 490 -15 3 1586 555 257 145 15 chr6 131292381 131292712 -18224325 + L1MA4 LINE L1 5558 5946 -354 3 1586 1771 245 15 2 chr6 131292876 131293269 -18223768 + MTD LTR MaLR 6 403 -16 3 1586 553 266 0 43 chr6 131293272 131293433 -18223604 + RSINE1 SINE B4 3 156 -9 3 1586 198 103 0 0 chr6 131293465 131293494 -18223543 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1586 223 178 0 0 chr6 131294016 131294061 -18222976 + T-rich Low_complexity Low_complexity 1 45 0 3 1586 836 118 28 8 chr6 131294087 131294264 -18222773 + B2_Mm2 SINE B2 2 180 -13 3 1586 211 259 33 33 chr6 131294253 131294313 -18222724 - ID SINE ID -159 65 6 3 1586 409 177 440 0 chr6 131294869 131295010 -18222027 + B3 SINE B2 1 203 -13 3 1586 207 0 0 0 chr6 131295258 131295281 -18221756 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1586 230 0 33 0 chr6 131295427 131295457 -18221580 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1586 701 188 45 8 chr6 131295457 131295591 -18221446 - B1_Mur2 SINE Alu -10 139 1 3 1586 950 117 0 22 chr6 131297530 131297714 -18219323 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1586 1050 117 0 0 chr6 131297740 131297919 -18219118 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1586 1089 102 0 19 chr6 131297936 131298366 -18218671 + (TG)n Simple_repeat Simple_repeat 1 421 0 3 1586 395 343 7 0 chr6 131298439 131298576 -18218461 + MTEa LTR MaLR 41 178 -201 3 1586 254 274 0 0 chr6 131298617 131298679 -18218358 + ID_B1 SINE B4 143 204 -20 3 1586 367 287 8 17 chr6 131298737 131298854 -18218183 + MTEa LTR MaLR 243 358 -21 3 1586 503 239 21 50 chr6 131299230 131299268 -18217769 + ID_B1 SINE B4 87 122 -102 3 1586 3531 18 5 0 chr6 131299268 131299662 -18217375 + MTA_Mm LTR MaLR 1 396 0 3 1586 503 239 21 50 chr6 131299662 131299764 -18217273 + ID_B1 SINE B4 123 223 -1 3 1586 450 0 0 0 chr6 131300412 131300462 -18216575 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 3 1586 300 20 61 0 chr6 131300471 131300520 -18216517 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1586 383 361 31 6 chr6 131300549 131300708 -18216329 - RSINE1 SINE B4 0 165 3 3 1586 220 299 62 45 chr6 131300898 131301010 -18216027 + B1F SINE Alu 36 149 0 3 1586 553 281 21 16 chr6 131301023 131301240 -18215797 + B3A SINE B2 2 216 0 3 1586 1185 54 0 0 chr6 131301248 131301395 -18215642 + B1_Mm SINE Alu 1 147 0 3 1586 462 49 0 0 chr6 131301426 131301487 -18215550 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1586 383 281 152 89 chr6 131301617 131301933 -18215104 + MLT1D LTR MaLR 21 356 -149 3 1586 472 313 91 28 chr6 131302282 131302535 -18214502 + MLT1B LTR MaLR 1 269 -121 3 1586 185 132 0 26 chr6 131302977 131303016 -18214021 + GA-rich Low_complexity Low_complexity 6 43 0 3 1586 388 305 129 5 chr6 131304781 131304982 -18212055 - MLT1D LTR MaLR -4 501 276 3 1586 306 284 12 0 chr6 131305156 131305237 -18211800 - ID4 SINE ID 0 83 2 3 1586 311 295 97 16 chr6 131305913 131306037 -18211000 - B1F1 SINE Alu -14 135 2 3 1586 242 318 11 11 chr6 131305957 131306046 -18210991 - B4A SINE B4 -127 165 77 3 1586 377 301 35 56 chr6 131306119 131306263 -18210774 + RSINE1 SINE B4 16 156 -9 3 1586 222 37 0 0 chr6 131306270 131306297 -18210740 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1586 27 29 0 0 chr6 131306450 131306484 -18210553 + AT_rich Low_complexity Low_complexity 1 34 0 3 1586 517 291 49 53 chr6 131306502 131306877 -18210160 + L1M2 LINE L1 2758 3097 -2780 3 1586 333 182 0 29 chr6 131306901 131306969 -18210068 + ID_B1 SINE B4 86 151 -73 3 1586 263 276 0 38 chr6 131306969 131306980 -18210057 + PB1D10 SINE Alu 5 80 -37 3 1586 441 346 12 12 chr6 131307025 131307189 -18209848 + Lx8 LINE L1 7127 7290 -183 4 1586 336 24 0 0 chr6 131307228 131307269 -18209768 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1586 379 316 176 4 chr6 131307471 131307738 -18209299 + L2a LINE L2 3101 3413 -13 4 1586 2311 105 55 12 chr6 131307908 131308310 -18208727 + RMER17B LTR ERVK 1 453 -505 4 1586 3646 27 121 0 chr6 131308310 131308750 -18208287 + MT2_Mm LTR ERVL 1 493 0 4 1586 2311 136 94 27 chr6 131308750 131309015 -18208022 + RMER17B LTR ERVK 454 739 -219 4 1586 293 197 0 14 chr6 131309192 131309264 -18207773 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 1586 451 277 160 32 chr6 131309936 131310332 -18206705 - RMER20B LTR ERVK -11 616 131 4 1586 1879 135 78 57 chr6 131310790 131311174 -18205863 + ORR1B1 LTR MaLR 3 394 0 4 1586 575 261 65 0 chr6 131311358 131311511 -18205526 - B3A SINE B2 -31 167 5 4 1586 339 44 0 0 chr6 131311529 131311574 -18205463 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1586 292 296 49 0 chr6 131311893 131311956 -18205081 + PB1D10 SINE Alu 13 79 -38 4 1586 453 178 44 0 chr6 131311956 131312046 -18204991 + B1_Mur2 SINE Alu 1 94 -55 4 1586 1071 101 0 7 chr6 131312095 131312244 -18204793 + B1_Mus1 SINE Alu 1 148 0 4 1586 295 159 14 28 chr6 131312244 131312315 -18204722 + GA-rich Low_complexity Low_complexity 2 71 0 4 1586 1230 90 0 0 chr6 131312317 131312495 -18204542 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 1586 267 301 86 0 chr6 131313131 131313224 -18203813 + B3A SINE B2 86 186 -12 4 1586 484 256 132 0 chr6 131313474 131313595 -18203442 - B3 SINE B2 -14 202 66 4 1586 533 259 158 0 chr6 131314660 131314818 -18202219 + B3 SINE B2 2 184 -32 4 1586 230 237 195 13 chr6 131316528 131316605 -18200432 + PB1D10 SINE Alu 1 91 -26 4 1586 775 189 41 20 chr6 131316612 131316758 -18200279 - B1_Mur3 SINE Alu 0 149 1 4 1586 510 279 36 30 chr6 131317234 131317400 -18199637 + B3A SINE B2 16 182 -16 4 1586 221 170 0 78 chr6 131317452 131317503 -18199534 + RSINE1 SINE B4 3 49 -116 4 1586 234 0 0 0 chr6 131317652 131317678 -18199359 + (CCAA)n Simple_repeat Simple_repeat 4 29 0 4 1586 21 0 0 0 chr6 131317678 131317699 -18199338 + GC_rich Low_complexity Low_complexity 1 21 0 4 1586 376 169 39 0 chr6 131319633 131319710 -18197327 - PB1D9 SINE Alu 0 120 41 4 1586 360 276 26 70 chr6 131319964 131320120 -18196917 + B1F1 SINE Alu 1 149 0 4 1586 212 330 104 28 chr6 131321108 131321214 -18195823 - PB1 SINE Alu -9 118 5 4 1586 228 273 0 0 chr6 131321255 131321310 -18195727 + RSINE1 SINE B4 38 92 -73 4 1586 728 233 181 0 chr6 131321301 131321491 -18195546 + B4A SINE B4 6 230 -62 4 1586 830 247 16 11 chr6 131321491 131321679 -18195358 + B3 SINE B2 1 189 -27 4 1586 535 211 8 26 chr6 131321831 131321948 -18195089 + PB1D10 SINE Alu 2 116 -1 4 1586 559 306 154 54 chr6 131322529 131322919 -18194118 - L1MC4 LINE L1 -956 7086 6658 4 1586 243 0 0 0 chr6 131323021 131323048 -18193989 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1586 424 178 4 138 chr6 131323497 131323631 -18193406 - B1_Mus2 SINE Alu 0 147 3 4 1586 405 323 65 65 chr6 131323694 131323942 -18193095 - B4 SINE B4 -18 274 27 4 1586 1183 48 7 0 chr6 131323996 131324141 -18192896 + B1_Mm SINE Alu 2 147 0 4 1586 459 0 0 0 chr6 131324384 131324435 -18192602 + (TATG)n Simple_repeat Simple_repeat 4 54 0 4 1586 225 188 0 20 chr6 131325914 131325963 -18191074 + GA-rich Low_complexity Low_complexity 1 48 0 4 1586 722 161 29 7 chr6 131327484 131327622 -18189415 - B1F SINE Alu -8 141 1 4 1586 514 225 359 18 chr6 131328019 131328236 -18188801 - B4A SINE B4 0 292 2 4 1586 326 292 56 0 chr6 131328407 131328496 -18188541 - PB1D9 SINE Alu -26 94 1 4 1586 232 326 0 34 chr6 131329920 131330009 -18187028 - BC1_Mm scRNA scRNA -63 89 4 4 1586 422 264 55 28 chr6 131330460 131330569 -18186468 - PB1D7 SINE Alu -8 112 1 4 1586 369 292 92 0 chr6 131330569 131330636 -18186401 - B4A SINE B4 -201 91 14 4 1586 580 256 82 16 chr6 131331378 131331541 -18185496 + B3A SINE B2 4 177 -21 4 1586 306 0 0 0 chr6 131331541 131331575 -18185462 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1586 580 256 82 16 chr6 131331575 131331594 -18185443 + B3A SINE B2 178 197 -1 4 1586 390 275 90 22 chr6 131331696 131331830 -18185207 + B1F SINE Alu 6 148 -1 4 1586 186 133 0 0 chr6 131333569 131333599 -18183438 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1587 313 265 88 50 chr6 131334153 131334312 -18182725 + MIR3 SINE MIR 30 194 -14 4 1587 302 248 48 67 chr6 131334910 131335014 -18182023 + PB1D9 SINE Alu 15 117 -33 4 1587 198 0 0 0 chr6 131335861 131335883 -18181154 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1587 391 265 27 68 chr6 131336082 131336212 -18180825 + B1F SINE Alu 10 139 -10 4 1587 222 37 0 0 chr6 131336212 131336239 -18180798 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4 1587 391 265 27 68 chr6 131336239 131336254 -18180783 + B1F SINE Alu 140 149 0 4 1587 49 78 0 21 chr6 131338081 131338226 -18178811 + GC_rich Low_complexity Low_complexity 1 142 0 4 1587 26 0 0 0 chr6 131338375 131338401 -18178636 + GC_rich Low_complexity Low_complexity 1 26 0 4 1587 200 160 60 0 chr6 131338476 131338526 -18178511 + (CGGG)n Simple_repeat Simple_repeat 4 56 0 4 1587 228 35 0 0 chr6 131338718 131338747 -18178290 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 4 1587 255 281 32 43 chr6 131338817 131338910 -18178127 + PB1D7 SINE Alu 3 94 -26 4 1587 607 189 61 0 chr6 131339375 131339507 -18177530 + RSINE1 SINE B4 4 143 -22 4 1587 420 196 51 115 chr6 131339566 131339722 -18177315 - B1_Mur3 SINE Alu -3 146 1 4 1587 547 290 6 41 chr6 131340287 131340456 -18176581 + RSINE1 SINE B4 3 165 0 4 1587 297 259 45 0 chr6 131340519 131340604 -18176433 + PB1D10 SINE Alu 11 98 -19 4 1587 21 71 0 0 chr6 131340632 131340674 -18176363 + AT_rich Low_complexity Low_complexity 1 42 0 4 1587 777 254 50 0 chr6 131341001 131341202 -18175835 - B3 SINE B2 -5 211 1 4 1587 451 193 102 0 chr6 131341233 131341321 -18175716 - ID_B1 SINE B4 -7 217 121 4 1587 289 343 9 9 chr6 131341908 131342017 -18175020 - PB1D7 SINE Alu -6 114 6 4 1587 353 325 37 37 chr6 131342369 131342503 -18174534 + RSINE1 SINE B4 3 136 -29 4 1587 947 236 85 7 chr6 131342574 131342861 -18174176 + ORR1D2 LTR MaLR 25 370 0 4 1587 1259 41 0 0 chr6 131343353 131343500 -18173537 - B1_Mus1 SINE Alu 0 148 2 4 1587 228 35 0 0 chr6 131343749 131343778 -18173259 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1587 338 188 49 12 chr6 131343780 131343942 -18173095 + (TA)n Simple_repeat Simple_repeat 2 169 0 4 1587 1661 119 233 6 chr6 131343945 131344114 -18172923 - ORR1C2 LTR MaLR 0 384 191 4 1587 432 0 0 0 chr6 131344114 131344162 -18172875 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1587 1661 119 233 6 chr6 131344162 131344305 -18172732 - ORR1C2 LTR MaLR -194 190 1 4 1587 562 218 14 83 chr6 131344345 131344490 -18172547 - B1F SINE Alu -14 135 1 4 1587 1199 54 0 13 chr6 131344522 131344671 -18172366 + B1_Mus1 SINE Alu 2 148 0 4 1587 407 286 8 16 chr6 131345578 131345699 -18171338 + ID_B1 SINE B4 105 224 0 4 1587 395 232 0 12 chr6 131345726 131345809 -18171228 + ID2 SINE ID 1 82 -1 4 1587 226 196 0 0 chr6 131345831 131345882 -18171155 + ID_B1 SINE B4 174 224 0 4 1587 259 295 6 12 chr6 131345906 131346017 -18171020 + CT-rich Low_complexity Low_complexity 1 110 0 4 1587 314 288 139 112 chr6 131346017 131346232 -18170805 - ID_B1 SINE B4 -1 223 3 4 1587 198 0 0 0 chr6 131346257 131346279 -18170758 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1587 3212 259 60 94 chr6 131346534 131347584 -18169453 - Lx8 LINE L1 -2 7471 6451 4 1587 5475 109 23 36 chr6 131347584 131348482 -18168555 - RMER17D LTR ERVK -2 887 1 4 1587 3212 259 60 94 chr6 131348482 131348494 -18168543 - Lx8 LINE L1 -1023 6450 6440 4 1587 2908 33 0 3 chr6 131348494 131348832 -18168205 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1587 3212 259 60 94 chr6 131348832 131349087 -18167950 - Lx8 LINE L1 -1034 6439 6198 4 1587 582 277 0 39 chr6 131349295 131349449 -18167588 + B1F2 SINE Alu 1 148 -1 4 1587 380 244 40 115 chr6 131349663 131349811 -18167226 + B4A SINE B4 14 150 -142 4 1587 508 287 32 51 chr6 131349953 131350111 -18166926 + RSINE1 SINE B4 6 160 -5 4 1587 328 326 0 11 chr6 131350459 131350552 -18166485 + PB1D10 SINE Alu 15 106 -11 4 1587 22 0 0 0 chr6 131350717 131350739 -18166298 + AT_rich Low_complexity Low_complexity 1 22 0 4 1587 216 360 69 10 chr6 131350812 131350913 -18166124 + RSINE1 SINE B4 55 161 -4 4 1587 306 125 0 0 chr6 131350989 131351037 -18166000 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1587 488 296 82 0 chr6 131351063 131351198 -18165839 - RSINE1 SINE B4 -17 148 3 4 1587 324 239 68 76 chr6 131351777 131351895 -18165142 - B1F SINE Alu 0 149 33 4 1587 694 184 20 34 chr6 131352463 131352609 -18164428 - B1_Mur1 SINE Alu 0 149 6 4 1587 276 299 43 93 chr6 131353394 131353534 -18163503 + B1F SINE Alu 10 142 -7 4 1587 474 101 0 0 chr6 131353589 131353658 -18163379 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 4 1587 429 210 8 48 chr6 131353744 131353869 -18163168 + L1M3 LINE L1 4556 4675 -1465 4 1587 1726 294 103 22 chr6 131353879 131354332 -18162705 + Lx8 LINE L1 4958 5448 -432 4 1587 225 0 0 0 chr6 131354332 131354357 -18162680 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1587 2495 290 110 34 chr6 131354357 131354538 -18162499 + Lx8 LINE L1 5449 5651 -1822 4 1587 3998 134 57 25 chr6 131354538 131355270 -18161767 - RMER6A LTR ERVK 0 756 1 4 1587 2495 284 125 56 chr6 131355270 131356557 -18160480 + Lx8 LINE L1 5652 7026 -447 4 1587 272 266 13 0 chr6 131356736 131356815 -18160222 + B1F SINE Alu 68 147 -2 5 1587 198 103 0 0 chr6 131356821 131356850 -18160187 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1587 369 43 0 0 chr6 131356915 131356962 -18160075 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1587 437 358 81 29 chr6 131356974 131357282 -18159755 + LTR33 LTR ERVL 25 348 -167 5 1587 200 278 0 18 chr6 131357391 131357446 -18159591 + CT-rich Low_complexity Low_complexity 6 59 0 5 1587 183 156 0 0 chr6 131357887 131357919 -18159118 + GA-rich Low_complexity Low_complexity 3 34 0 5 1587 242 265 11 57 chr6 131358665 131358753 -18158284 + B3 SINE B2 2 85 -131 5 1587 383 241 61 18 chr6 131358677 131358791 -18158246 + RSINE1 SINE B4 11 129 -36 5 1587 234 0 0 0 chr6 131358792 131358818 -18158219 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 5 1587 2197 180 30 17 chr6 131359346 131359748 -18157289 - MTB_Mm LTR MaLR 0 407 1 5 1587 495 0 0 0 chr6 131359784 131359839 -18157198 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1587 1108 79 0 0 chr6 131359840 131359980 -18157057 - B1_Mus1 SINE Alu -7 141 2 5 1587 325 288 20 10 chr6 131360888 131361063 -18155974 - B1F SINE Alu 0 149 1 5 1587 233 220 0 39 chr6 131362065 131362117 -18154920 + B1F SINE Alu 10 59 -90 5 1587 278 303 32 24 chr6 131362172 131362297 -18154740 + Lx8 LINE L1 6382 6507 -966 5 1587 258 216 65 43 chr6 131362303 131362395 -18154642 + MTD LTR MaLR 311 404 -15 5 1587 24 32 0 0 chr6 131362628 131362659 -18154378 + AT_rich Low_complexity Low_complexity 1 31 0 5 1587 431 316 38 31 chr6 131362674 131362834 -18154203 - RSINE1 SINE B4 0 165 5 5 1587 1247 247 28 75 chr6 131362934 131363332 -18153705 + MTEa LTR MaLR 1 379 0 5 1587 365 269 11 11 chr6 131364010 131364104 -18152933 + PB1D10 SINE Alu 1 94 -23 5 1587 239 256 82 35 chr6 131364657 131364742 -18152295 + AluF_3 SINE Alu 146 210 -101 5 1587 21 0 0 0 chr6 131364772 131364793 -18152244 + AT_rich Low_complexity Low_complexity 1 21 0 5 1587 291 225 28 0 chr6 131364800 131364871 -18152166 + ID4 SINE ID 2 74 -9 5 1587 775 262 25 10 chr6 131365329 131365526 -18151511 - B3 SINE B2 -16 200 1 5 1587 316 184 235 9 chr6 131365802 131365917 -18151120 + Tigger1 DNA MER2_type 65 205 -2213 5 1587 1016 181 50 0 chr6 131365925 131366124 -18150913 - B3 SINE B2 -5 211 3 5 1587 201 74 0 0 chr6 131366428 131366455 -18150582 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 5 1587 218 345 0 0 chr6 131366475 131366533 -18150504 - ID4 SINE ID -24 59 2 5 1587 651 278 77 59 chr6 131366587 131366800 -18150237 - B4A SINE B4 0 292 80 5 1587 360 0 0 0 chr6 131366800 131366840 -18150197 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1587 651 278 77 59 chr6 131366840 131366913 -18150124 - B4A SINE B4 -213 79 2 5 1587 349 325 0 32 chr6 131367523 131367647 -18149390 - PB1D7 SINE Alu 0 120 1 5 1587 995 262 22 98 chr6 131367684 131368094 -18148943 - MTE2a LTR MaLR 0 379 1 5 1587 270 362 0 0 chr6 131368299 131368379 -18148658 - ID2 SINE ID -3 80 1 5 1587 207 0 0 0 chr6 131369464 131369487 -18147550 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1587 1157 57 0 0 chr6 131369487 131369627 -18147410 - B1_Mm SINE Alu -6 141 2 5 1587 231 191 0 0 chr6 131370653 131370716 -18146321 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1587 2003 256 121 92 chr6 131370997 131371912 -18145125 - Lx6 LINE L1 -1 7459 6518 5 1587 1407 240 48 37 chr6 131371922 131372298 -18144739 - Lx6 LINE L1 -1207 6253 5874 5 1587 859 187 17 17 chr6 131372299 131372473 -18144564 - RLTR16 LTR ERVK 0 505 332 5 1587 882 138 40 24 chr6 131372448 131372637 -18144400 - RLTR16 LTR ERVK -361 207 13 5 1587 1437 209 33 62 chr6 131372638 131372974 -18144063 - Lx6 LINE L1 -13 5867 5542 5 1587 3108 134 76 34 chr6 131373020 131373585 -18143452 - RLTR17 LTR ERVK -100 592 4 5 1587 4437 155 23 38 chr6 131373594 131374281 -18142756 - Lx6 LINE L1 -335 5545 4862 5 1587 1210 61 0 0 chr6 131374281 131374428 -18142609 - B1_Mus2 SINE Alu 0 147 1 5 1587 4437 155 23 38 chr6 131374428 131374563 -18142474 - Lx6 LINE L1 -1019 4861 4735 5 1587 1062 82 7 0 chr6 131374578 131374724 -18142313 - B1_Mus1 SINE Alu 0 148 2 5 1587 1006 187 65 4 chr6 131374788 131375019 -18142018 - Lx6 LINE L1 -1363 4517 4273 5 1587 465 240 152 104 chr6 131375044 131375314 -18141723 + RMER12 LTR ERVK 1040 1322 0 5 1587 2075 108 74 3 chr6 131375756 131376107 -18140930 - RLTR47_MM LTR ERV1 0 532 157 5 1587 1692 210 66 19 chr6 131376107 131376538 -18140499 - RMER16 LTR ERVK 0 533 1 5 1587 624 108 116 0 chr6 131376541 131376670 -18140367 - RLTR47_MM LTR ERV1 -386 146 3 5 1587 280 167 21 179 chr6 131376673 131376694 -18140343 - Lx6 LINE L1 -2862 3018 3001 5 1587 1589 37 10 5 chr6 131376694 131376886 -18140151 - B2_Mm1t SINE B2 0 193 1 5 1587 280 167 21 179 chr6 131376886 131376959 -18140078 - Lx6 LINE L1 -2880 3000 2939 5 1587 750 121 193 0 chr6 131376965 131377105 -18139932 - Lx6 LINE L1 -3926 1954 1788 5 1587 1642 157 57 0 chr6 131377106 131377424 -18139613 + MYSERV16_I-int LTR ERVK 1982 2317 -9 5 1587 2467 130 89 5 chr6 131377424 131377827 -18139210 + BGLII_B LTR ERVK 3 439 -2 5 1587 2325 144 65 18 chr6 131377833 131378247 -18138790 - Lx6 LINE L1 -4145 1735 1302 5 1587 3029 80 5 5 chr6 131378247 131378647 -18138390 - MTB LTR MaLR 0 400 1 5 1587 2325 183 101 27 chr6 131378647 131378857 -18138180 - Lx6 LINE L1 -5781 1305 1066 5 1587 1940 189 13 16 chr6 131378858 131379245 -18137792 - ORR1B1 LTR MaLR -8 386 1 5 1587 325 240 27 128 chr6 131379246 131379394 -18137643 - Lx6 LINE L1 -6014 1072 940 5 1587 1272 210 81 48 chr6 131379406 131379716 -18137321 - RMER1B Other Other -13 1053 734 5 1587 515 221 36 35 chr6 131379997 131380161 -18136876 - RMER20B LTR ERVK -355 161 1 5 1587 1307 251 175 62 chr6 131380162 131381020 -18136017 - RMER1B Other Other -354 676 1 5 1587 250 270 12 25 chr6 131381330 131381412 -18135625 - ID4_ SINE ID -60 92 12 5 1587 25 75 0 0 chr6 131381424 131381477 -18135560 + AT_rich Low_complexity Low_complexity 1 53 0 5 1587 790 251 85 0 chr6 131381479 131381678 -18135359 - B3 SINE B2 0 216 1 5 1587 203 133 0 0 chr6 131383529 131383559 -18133478 + (CATGT)n Simple_repeat Simple_repeat 3 32 0 5 1587 12428 171 46 26 chr6 131384130 131387209 -18129828 - Lx5 LINE L1 -8 7042 3850 5 1587 1289 119 0 30 chr6 131387209 131387409 -18129628 - B2_Mm2 SINE B2 0 195 2 5 1587 12428 136 51 28 chr6 131387409 131387435 -18129602 - Lx5 LINE L1 -2028 3849 3844 5 1587 722 199 48 5 chr6 131387435 131387622 -18129415 - B2_Mm2 SINE B2 0 195 1 5 1587 12428 136 51 28 chr6 131387622 131387843 -18129194 - Lx5 LINE L1 -2034 3843 3642 5 1587 2382 126 10 5 chr6 131388743 131389134 -18127903 - Lx5 LINE L1 -2231 3646 3254 5 1587 4175 158 67 36 chr6 131389134 131390020 -18127017 - RLTR13D3 LTR ERVK 0 1114 1 5 1587 5771 215 121 19 chr6 131390020 131390229 -18126808 - MusHAL1 LINE L1 -651 2061 1848 5 1587 4068 185 27 9 chr6 131390229 131391010 -18126027 - Lx3C LINE L1 -4 6972 6178 5 1587 5771 215 121 19 chr6 131391010 131391169 -18125868 - MusHAL1 LINE L1 -865 1847 1685 5 1587 1438 63 15 35 chr6 131391169 131391366 -18125671 - B2_Mm2 SINE B2 -1 194 2 5 1587 5771 215 121 19 chr6 131391366 131391578 -18125459 - MusHAL1 LINE L1 -1028 1684 1451 5 1587 375 121 0 0 chr6 131391578 131391636 -18125401 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1587 5771 215 121 19 chr6 131391636 131392122 -18124915 - MusHAL1 LINE L1 -1262 1450 864 5 1587 195 129 0 0 chr6 131392122 131392153 -18124884 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1587 5771 215 121 19 chr6 131392153 131392216 -18124821 - MusHAL1 LINE L1 -1849 863 794 5 1587 270 106 0 0 chr6 131392216 131392263 -18124774 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1587 5771 215 121 19 chr6 131392263 131392895 -18124142 - MusHAL1 LINE L1 -1919 793 117 5 1587 725 256 6 13 chr6 131392899 131393057 -18123980 + RMER12 LTR ERVK 1 157 -1165 5 1587 644 78 175 0 chr6 131393064 131393167 -18123870 - B1_Mm SINE Alu 0 147 27 5 1587 868 247 147 122 chr6 131393146 131393801 -18123236 + RMER12 LTR ERVK 127 818 -1030 5 1587 262 204 147 39 chr6 131393804 131393906 -18123131 + RLTR22_Mus LTR ERVK 1145 1257 -551 5 1587 1036 209 86 56 chr6 131393900 131394204 -18122833 + RMER12 LTR ERVK 1010 1322 0 5 1587 1246 146 13 116 chr6 131394204 131394361 -18122676 - L1_Mur2 LINE L1 -5767 945 807 5 1587 1162 133 0 6 chr6 131394361 131394543 -18122494 - B2_Mm2 SINE B2 -14 181 1 5 1587 4887 63 5 3 chr6 131394553 131395189 -18121848 - L1Md_F2 LINE L1 -1 6581 5945 5 1587 1246 146 13 116 chr6 131395189 131395338 -18121699 - L1_Mur2 LINE L1 -5906 806 661 5 1587 2159 291 58 18 chr6 131395339 131396002 -18121035 + RMER1C Other Other 282 1037 -305 5 1587 888 224 111 41 chr6 131396002 131396272 -18120765 + MTE2a LTR MaLR 86 374 -5 5 1587 1384 246 69 19 chr6 131396274 131396635 -18120402 - MTD LTR MaLR 0 419 41 5 1587 803 312 16 19 chr6 131396746 131397004 -18120033 + B4A SINE B4 1 257 -35 5 1587 324 0 0 0 chr6 131397048 131397084 -18119953 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1587 833 283 86 52 chr6 131397297 131397454 -18119583 - L1M4c LINE L1 -3397 2979 2819 5 1587 378 0 0 0 chr6 131397454 131397496 -18119541 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1587 1008 66 66 0 chr6 131397498 131397635 -18119402 - B1_Mus1 SINE Alu -1 147 2 5 1587 833 283 86 52 chr6 131397635 131397951 -18119086 - L1M4c LINE L1 -3558 2818 2487 5 1587 6653 84 10 11 chr6 131397969 131398511 -18118526 + L1VL2 LINE L1 129 674 -5661 5 1587 4410 12 2 0 chr6 131398511 131399003 -18118034 + MT2_Mm LTR ERVL 1 493 0 5 1587 6653 83 19 3 chr6 131399003 131400142 -18116895 + L1VL2 LINE L1 675 1826 -1789 5 1587 317 303 0 0 chr6 131400285 131400374 -18116663 - PB1D10 SINE Alu -2 115 27 5 1587 1992 72 60 3 chr6 131401121 131401426 -18115611 + L1_Mur1 LINE L1 3454 3764 -150 5 1587 207 0 0 0 chr6 131401441 131401464 -18115573 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1587 255 310 14 0 chr6 131401551 131401622 -18115415 + ID4_ SINE ID 9 80 -3 5 1587 556 153 10 10 chr6 131401667 131401766 -18115271 - URR1B DNA MER1_type 0 225 127 5 1587 1528 48 5 0 chr6 131401865 131402051 -18114986 - B2_Mm1t SINE B2 -5 188 2 5 1587 333 296 54 67 chr6 131402051 131402091 -18114946 - L1M4c LINE L1 -3971 2413 2378 5 1587 325 289 58 0 chr6 131402091 131402195 -18114842 - PB1D10 SINE Alu -7 110 1 5 1587 333 296 54 67 chr6 131402195 131402393 -18114644 - L1M4c LINE L1 -4007 2377 2179 5 1587 271 257 0 28 chr6 131402628 131402700 -18114337 + Tigger5 DNA MER2_type 2335 2404 -2 5 1587 633 219 71 24 chr6 131402859 131402985 -18114052 - ID_B1 SINE B4 -9 215 84 5 1587 542 302 33 7 chr6 131403198 131403348 -18113689 + RSINE1 SINE B4 2 155 -10 5 1587 418 259 0 74 chr6 131403757 131403878 -18113159 - ID_B1 SINE B4 0 224 113 5 1587 230 217 39 104 chr6 131403920 131403997 -18113040 + MTD LTR MaLR 314 385 -34 5 1587 1252 288 46 75 chr6 131403965 131404474 -18112563 + RLTR20A2 LTR ERVK 7 479 -99 5 1587 291 28 0 0 chr6 131404474 131404510 -18112527 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1587 1252 288 46 75 chr6 131404510 131404589 -18112448 + RLTR20A2 LTR ERVK 480 577 -1 5 1587 1396 119 62 0 chr6 131404752 131404962 -18112075 + RMER6D LTR ERVK 1 223 -497 5 1587 2170 133 41 18 chr6 131405856 131406235 -18110802 + ORR1A3 LTR MaLR 1 413 -8 5 1587 1763 188 13 0 chr6 131406239 131406543 -18110494 + MTC LTR MaLR 60 367 -54 5 1587 2111 183 65 81 chr6 131406556 131406742 -18110295 + RMER6D LTR ERVK 208 390 -330 5 1587 4470 134 9 23 chr6 131406742 131406756 -18110281 - Lx3A LINE L1 -1 6980 6967 5 1587 324 0 0 0 chr6 131406756 131406792 -18110245 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 6 1587 4470 134 9 23 chr6 131406792 131407526 -18109511 - Lx3A LINE L1 -15 6966 6243 5 1587 2111 183 65 81 chr6 131407526 131407844 -18109193 + RMER6D LTR ERVK 391 704 -16 5 1587 779 289 62 10 chr6 131407875 131408182 -18108855 - L1M2 LINE L1 -984 5159 4837 6 1587 380 298 8 36 chr6 131408169 131408373 -18108664 - L1M2 LINE L1 -2300 3843 3660 6 1587 275 218 102 46 chr6 131408389 131408503 -18108534 - PB1D10 SINE Alu -1 148 25 6 1587 1276 72 39 11 chr6 131408754 131408936 -18108101 - B2_Mm2 SINE B2 -8 187 1 6 1587 246 352 28 19 chr6 131409927 131410034 -18107003 + PB1D10 SINE Alu 3 110 -7 6 1587 234 188 12 36 chr6 131410302 131410385 -18106652 + (TATG)n Simple_repeat Simple_repeat 2 82 0 6 1587 319 132 129 29 chr6 131410403 131410473 -18106564 - HAL1-3A_ME LINE L1 -849 2009 1933 6 1587 501 235 0 10 chr6 131410729 131410832 -18106205 + B1F1 SINE Alu 1 102 -47 6 1587 571 280 175 17 chr6 131410851 131411091 -18105946 - RMER15 LTR ERVL -25 550 273 6 1587 2800 55 0 0 chr6 131411349 131411697 -18105340 + L1Md_F3 LINE L1 5239 5586 -297 6 1587 8079 37 5 16 chr6 131411697 131412706 -18104331 + L1Md_F3 LINE L1 5587 6584 0 6 1587 21 57 0 0 chr6 131412793 131412828 -18104209 + AT_rich Low_complexity Low_complexity 1 35 0 6 1587 192 40 0 0 chr6 131412942 131412967 -18104070 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1587 549 0 0 0 chr6 131413359 131413420 -18103617 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1587 724 196 0 18 chr6 131413505 131413676 -18103361 + CT-rich Low_complexity Low_complexity 4 171 0 6 1587 221 194 0 29 chr6 131413678 131413697 -18103340 + (TTTA)n Simple_repeat Simple_repeat 2 20 0 6 1587 539 207 102 15 chr6 131413697 131413834 -18103203 - B1_Mur2 SINE Alu 0 149 1 6 1587 221 194 0 29 chr6 131413834 131413883 -18103154 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 1587 4342 167 37 15 chr6 131413887 131414691 -18102346 - Lx2B LINE L1 -1 6999 6178 6 1587 561 293 158 13 chr6 131414704 131414932 -18102105 - MTE-int LTR MaLR -1302 278 18 6 1587 295 259 128 40 chr6 131415036 131415185 -18101852 - MTEb LTR MaLR -122 257 96 6 1587 342 45 0 0 chr6 131415401 131415445 -18101592 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 1587 841 255 25 10 chr6 131415451 131415649 -18101388 + B3 SINE B2 1 201 -15 6 1587 588 248 23 0 chr6 131415782 131415915 -18101122 + B1_Mur1 SINE Alu 3 138 -11 6 1587 306 0 0 0 chr6 131415915 131415949 -18101088 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1587 2336 182 88 14 chr6 131415952 131416443 -18100594 + RLTR11A2 LTR ERVK 1 527 0 6 1587 1061 133 0 6 chr6 131416639 131416805 -18100232 - L1_Mus2 LINE L1 -1 6565 6401 6 1587 432 257 18 114 chr6 131416808 131416975 -18100062 + B3 SINE B2 65 215 -1 6 1587 195 184 0 0 chr6 131417351 131417389 -18099648 + CT-rich Low_complexity Low_complexity 2 39 0 6 1587 394 212 19 159 chr6 131417400 131417557 -18099480 - B1_Mur1 SINE Alu -10 139 5 6 1587 227 274 0 31 chr6 131417970 131418034 -18099003 + CT-rich Low_complexity Low_complexity 3 64 0 6 1587 467 259 25 41 chr6 131418036 131418157 -18098880 - ID_B1 SINE B4 -16 208 90 6 1587 222 37 0 0 chr6 131418194 131418221 -18098816 + (TTTTTA)n Simple_repeat Simple_repeat 3 29 0 6 1587 1268 112 16 0 chr6 131418229 131418417 -18098620 - B2_Mm2 SINE B2 -3 192 2 6 1587 8330 119 27 12 chr6 131418421 131420535 -18096502 - Lx3A LINE L1 -5 6976 4837 6 1587 5128 95 64 5 chr6 131420537 131421351 -18095686 + Lx3A LINE L1 3958 4819 -1067 6 1587 378 0 0 0 chr6 131422942 131422984 -18094053 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1587 242 73 0 24 chr6 131423136 131423178 -18093859 + (TTA)n Simple_repeat Simple_repeat 3 43 0 6 1587 1789 143 37 0 chr6 131423182 131423476 -18093561 - Lx3B LINE L1 -5 6968 6664 6 1587 22 35 0 0 chr6 131423596 131423625 -18093412 + AT_rich Low_complexity Low_complexity 1 29 0 6 1587 681 143 23 16 chr6 131423625 131423753 -18093284 - RLTR22_Mur LTR ERVK -1412 436 308 6 1587 376 215 39 38 chr6 131424089 131424208 -18092829 + B1_Mur1 SINE Alu 6 146 -3 6 1587 370 109 0 15 chr6 131424217 131424282 -18092755 - RLTR22_Mur LTR ERVK -1063 785 722 6 1587 404 177 14 14 chr6 131424295 131424438 -18092599 + (CA)n Simple_repeat Simple_repeat 2 144 0 6 1587 276 228 25 42 chr6 131424444 131424516 -18092521 + (CATA)n Simple_repeat Simple_repeat 4 75 0 6 1587 218 105 26 0 chr6 131424516 131424554 -18092483 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1587 276 228 25 42 chr6 131424554 131424600 -18092437 + (CATA)n Simple_repeat Simple_repeat 4 47 0 6 1587 514 202 18 12 chr6 131424603 131424773 -18092264 + (CA)n Simple_repeat Simple_repeat 1 171 0 6 1587 1205 94 39 6 chr6 131425002 131425183 -18091854 + B2_Mm2 SINE B2 1 187 -8 6 1587 294 193 86 108 chr6 131425400 131425493 -18091544 + PB1D10 SINE Alu 25 115 -34 6 1587 338 296 41 40 chr6 131425519 131425721 -18091316 + L1_Mur3 LINE L1 3661 3843 -2300 6 1587 606 157 0 88 chr6 131425944 131426091 -18090946 - L1Md_F3 LINE L1 -1 6583 6450 6 1587 6560 107 0 0 chr6 131426092 131427054 -18089983 + L1_Mm LINE L1 3311 4272 -1611 6 1587 1153 163 77 32 chr6 131427152 131427400 -18089637 + RLTR22_Mur LTR ERVK 1590 1848 0 6 1587 733 148 11 33 chr6 131427458 131427640 -18089397 + (TG)n Simple_repeat Simple_repeat 2 179 0 6 1587 233 196 18 18 chr6 131427642 131427699 -18089338 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 6 1587 278 271 0 0 chr6 131428521 131428580 -18088457 - ID4 SINE ID -1 82 24 6 1587 387 49 671 0 chr6 131428599 131428681 -18088356 - B1_Mm SINE Alu -10 137 1 6 1587 995 43 93 0 chr6 131428681 131428820 -18088217 - BC1_Mm scRNA scRNA 0 152 1 6 1587 230 254 91 0 chr6 131428780 131428835 -18088202 - ZP3AR Satellite Satellite -130 82 23 6 1587 1194 105 10 0 chr6 131428841 131429157 -18087880 + (TCTA)n Simple_repeat Simple_repeat 1 319 0 6 1587 533 331 83 8 chr6 131429162 131429427 -18087610 - B4A SINE B4 -6 286 2 6 1587 277 366 35 21 chr6 131429447 131429592 -18087445 - B1F1 SINE Alu -2 147 1 6 1587 290 391 9 0 chr6 131429598 131429713 -18087324 - PB1D10 SINE Alu -1 116 1 6 1587 224 283 94 0 chr6 131430084 131430137 -18086900 - ID4 SINE ID -24 59 2 6 1587 269 279 114 29 chr6 131430167 131430443 -18086594 - L1M3 LINE L1 -2754 3386 3090 6 1587 207 0 0 0 chr6 131430443 131430466 -18086571 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1587 269 279 114 29 chr6 131430466 131430495 -18086542 - L1M3 LINE L1 -3051 3089 3056 6 1587 1955 198 38 3 chr6 131430505 131430874 -18086163 + RLTR14 LTR ERV1 1 382 0 6 1587 309 268 63 58 chr6 131431102 131431292 -18085745 - L1M3 LINE L1 -3818 2322 2132 6 1587 221 163 70 20 chr6 131431296 131431436 -18085601 + (TA)n Simple_repeat Simple_repeat 1 147 0 6 1587 507 250 28 99 chr6 131431887 131432069 -18084968 + B3 SINE B2 48 216 0 6 1587 315 0 0 0 chr6 131432775 131432810 -18084227 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1587 234 0 0 0 chr6 131433012 131433038 -18083999 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1587 1010 32 8 0 chr6 131433312 131433438 -18083599 + (TCTCC)n Simple_repeat Simple_repeat 5 131 0 6 1587 222 281 0 43 chr6 131433439 131433488 -18083549 + polypyrimidine Low_complexity Low_complexity 47 91 0 6 1587 1314 78 0 0 chr6 131433488 131433668 -18083369 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1587 222 281 0 43 chr6 131433668 131433711 -18083326 + polypyrimidine Low_complexity Low_complexity 4 46 0 6 1587 421 276 13 2 chr6 131433713 131433826 -18083211 - PB1D10 SINE Alu -4 123 2 6 1587 1298 67 33 11 chr6 131434000 131434157 -18082880 + B2_Mm1t SINE B2 2 158 -35 6 1587 372 43 0 0 chr6 131434157 131434203 -18082834 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 6 1587 1298 67 33 11 chr6 131434203 131434226 -18082811 + B2_Mm1t SINE B2 159 186 -7 6 1587 352 280 50 46 chr6 131434644 131434777 -18082260 + B3A SINE B2 7 129 -87 6 1587 180 351 0 61 chr6 131434888 131434970 -18082067 + MIR SINE MIR 176 252 -10 6 1587 329 233 45 26 chr6 131434977 131435014 -18082023 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 6 1587 859 18 18 0 chr6 131435014 131435123 -18081914 + (TC)n Simple_repeat Simple_repeat 1 111 0 6 1587 329 233 45 26 chr6 131435123 131435239 -18081798 + (TCTA)n Simple_repeat Simple_repeat 2 122 0 6 1587 34 84 0 0 chr6 131435584 131435667 -18081370 + AT_rich Low_complexity Low_complexity 1 83 0 6 1587 202 381 12 12 chr6 131435777 131435862 -18081175 - L3 LINE CR1 -356 4133 4049 6 1587 1061 82 7 7 chr6 131436656 131436803 -18080234 - B1_Mus1 SINE Alu 0 148 2 6 1587 1647 255 8 14 chr6 131438274 131438644 -18078393 - MTC LTR MaLR -53 368 1 6 1587 24 0 0 0 chr6 131438667 131438691 -18078346 + AT_rich Low_complexity Low_complexity 1 24 0 6 1587 252 333 27 0 chr6 131438869 131438944 -18078093 + ID4 SINE ID 7 83 0 6 1587 901 83 0 0 chr6 131439344 131439465 -18077572 + B1_Mus1 SINE Alu 3 123 -25 6 1587 481 245 14 21 chr6 131439465 131439486 -18077551 + ID_B1 SINE B4 84 224 0 6 1587 270 0 0 0 chr6 131440717 131440747 -18076290 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1587 414 273 12 38 chr6 131441024 131441184 -18075853 + CT-rich Low_complexity Low_complexity 3 158 0 6 1587 541 241 51 7 chr6 131441185 131441323 -18075714 - B1F SINE Alu -1 148 5 6 1587 6526 95 38 2 chr6 131441726 131442262 -18074775 - L1_Mus2 LINE L1 -2 6564 6000 6 1587 3302 43 2 0 chr6 131442262 131442656 -18074381 - MTA_Mm LTR MaLR 0 396 2 6 1587 6526 112 36 2 chr6 131442656 131443408 -18073629 - L1_Mus2 LINE L1 -567 5999 5226 6 1587 258 278 31 62 chr6 131443604 131443700 -18073337 + MER47C DNA MER2_type 3 95 -2 6 1587 499 273 88 32 chr6 131443863 131443988 -18073049 - ID_B1 SINE B4 -9 215 84 6 1587 390 250 0 80 chr6 131444758 131444871 -18072166 - ID_B1 SINE B4 0 224 121 6 1587 1713 186 64 111 chr6 131444985 131445488 -18071549 + RLTR20A LTR ERVK 5 439 -102 6 1587 417 129 0 0 chr6 131445488 131445558 -18071479 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 1587 1713 184 66 126 chr6 131445558 131445647 -18071390 + RLTR20A LTR ERVK 440 540 -1 6 1587 1233 158 67 0 chr6 131445812 131446021 -18071016 + RMER6D LTR ERVK 1 223 -497 7 1587 212 312 0 0 chr6 131446631 131446695 -18070342 + ID SINE ID 1 64 -160 7 1587 2091 138 50 18 chr6 131446916 131447292 -18069745 + ORR1A3 LTR MaLR 1 413 -8 7 1587 1514 227 6 72 chr6 131447296 131447461 -18069576 + MTC LTR MaLR 60 208 -213 7 1587 8513 32 0 0 chr6 131447461 131448456 -18068581 + L1Md_A LINE L1 5588 6582 0 7 1587 1514 227 6 72 chr6 131448456 131448622 -18068415 + MTC LTR MaLR 209 369 -52 7 1587 1840 201 69 126 chr6 131448624 131448833 -18068204 + RMER6D LTR ERVK 207 390 -330 7 1587 4808 127 3 9 chr6 131448833 131449575 -18067462 - Lx3A LINE L1 -3 6978 6242 7 1587 1840 201 69 126 chr6 131449575 131449888 -18067149 + RMER6D LTR ERVK 391 699 -21 7 1587 644 307 55 13 chr6 131449925 131450235 -18066802 - L1M2 LINE L1 -984 5159 4837 7 1587 359 286 18 18 chr6 131450230 131450411 -18066626 - L1M2 LINE L1 -2300 3843 3663 7 1587 226 206 96 67 chr6 131450462 131450554 -18066483 - PB1D10 SINE Alu -34 115 25 7 1587 1249 92 38 5 chr6 131450797 131450983 -18066054 - B2_Mm2 SINE B2 -3 192 1 7 1587 207 88 0 0 chr6 131450992 131451026 -18066011 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1587 25530 28 2 0 chr6 131451752 131454943 -18062094 + L1Md_A LINE L1 2390 5586 -297 7 1587 8451 33 1 0 chr6 131454943 131455937 -18061100 + L1Md_A LINE L1 5587 6581 -1 7 1587 303 85 0 0 chr6 131455944 131455991 -18061046 + (A)n Simple_repeat Simple_repeat 1 47 0 7 1587 230 368 28 19 chr6 131456220 131456328 -18060709 + PB1D10 SINE Alu 2 110 -7 7 1587 274 220 10 10 chr6 131456598 131456699 -18060338 + (TG)n Simple_repeat Simple_repeat 2 102 0 7 1587 522 226 0 10 chr6 131457003 131457106 -18059931 + B1F1 SINE Alu 1 102 -47 7 1587 622 275 128 62 chr6 131457125 131457592 -18059445 - RMER15 LTR ERVL -25 550 1 7 1587 28 29 0 0 chr6 131457709 131457744 -18059293 + AT_rich Low_complexity Low_complexity 1 35 0 7 1587 570 54 0 0 chr6 131457894 131457968 -18059069 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1587 852 39 0 0 chr6 131458060 131458164 -18058873 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 7 1587 378 42 0 0 chr6 131458180 131458228 -18058809 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 7 1587 481 231 73 18 chr6 131458245 131458355 -18058682 - B1_Mur2 SINE Alu -33 116 1 7 1587 4277 179 23 16 chr6 131458381 131459194 -18057843 - Lx2B LINE L1 -4 6996 6178 7 1587 638 281 140 19 chr6 131459197 131459462 -18057575 - MTE-int LTR MaLR -1283 297 1 7 1587 308 268 107 61 chr6 131459566 131459697 -18057340 - MTEb LTR MaLR -147 232 96 7 1587 336 169 0 0 chr6 131459910 131459987 -18057050 + (CAA)n Simple_repeat Simple_repeat 2 78 0 7 1587 750 265 25 35 chr6 131459992 131460195 -18056842 + B3 SINE B2 1 201 -15 7 1587 638 248 23 0 chr6 131460328 131460461 -18056576 + B1_Mur1 SINE Alu 3 138 -11 7 1587 213 39 0 0 chr6 131460461 131460487 -18056550 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1587 2211 180 87 22 chr6 131460490 131460985 -18056052 + RLTR11A2 LTR ERVK 1 527 0 7 1587 615 84 0 0 chr6 131461085 131461180 -18055857 + (TATG)n Simple_repeat Simple_repeat 2 96 0 7 1587 1036 127 0 18 chr6 131461261 131461430 -18055607 - L1_Mus2 LINE L1 0 6566 6401 7 1587 354 324 47 20 chr6 131461431 131461579 -18055458 + B3 SINE B2 63 214 -2 7 1587 21 36 0 0 chr6 131461592 131461620 -18055417 + AT_rich Low_complexity Low_complexity 1 28 0 7 1587 6889 87 12 2 chr6 131461630 131462625 -18054412 - L1Md_F2 LINE L1 -2 5881 4877 7 1587 4795 105 14 3 chr6 131462625 131463321 -18053716 + L1Md_F2 LINE L1 5866 6569 -13 7 1587 283 106 20 60 chr6 131463351 131463451 -18053586 + A-rich Low_complexity Low_complexity 1 96 0 7 1587 180 152 0 0 chr6 131463818 131463851 -18053186 + CT-rich Low_complexity Low_complexity 3 35 0 7 1587 554 234 23 0 chr6 131463864 131463992 -18053045 - B1_Mur1 SINE Alu -14 135 5 7 1587 227 274 0 31 chr6 131464405 131464469 -18052568 + CT-rich Low_complexity Low_complexity 3 64 0 7 1587 483 259 25 41 chr6 131464471 131464592 -18052445 - ID_B1 SINE B4 -16 208 90 7 1587 1297 116 16 0 chr6 131464652 131464841 -18052196 - B2_Mm2 SINE B2 -2 193 2 7 198 7802 126 26 16 chr6 131464850 131466978 -18050059 - Lx3A LINE L1 -5 6976 4834 7 1588 4667 102 65 8 chr6 131466976 131467775 -18049262 + Lx3A LINE L1 3957 4801 -1085 7 1588 457 76 25 0 chr6 131467863 131467942 -18049095 + (TA)n Simple_repeat Simple_repeat 2 82 0 7 1588 6445 35 0 3 chr6 131467944 131468709 -18048328 - L1Md_F2 LINE L1 -12 6570 5808 7 1588 461 47 16 0 chr6 131470387 131470451 -18046586 + (TTA)n Simple_repeat Simple_repeat 3 67 0 7 1588 1849 146 17 0 chr6 131470451 131470739 -18046298 - Lx3B LINE L1 -17 6956 6664 7 1588 2274 80 113 11 chr6 131470803 131471157 -18045880 + RLTR10 LTR ERVK 1 390 0 7 1588 562 344 42 0 chr6 131471233 131471259 -18045778 - B3A SINE B2 0 198 169 7 1588 204 40 0 0 chr6 131471259 131471284 -18045753 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1588 562 344 42 0 chr6 131471284 131471446 -18045591 - B3A SINE B2 -30 168 3 7 1588 386 136 0 0 chr6 131471487 131471553 -18045484 - Lx3B LINE L1 -785 6188 6123 7 1588 3084 162 22 7 chr6 131471554 131472106 -18044931 + Lx3B LINE L1 6414 6973 0 7 1588 323 395 23 0 chr6 131472286 131472463 -18044574 - L1MC4a LINE L1 -1971 5911 5731 7 1588 1216 290 60 31 chr6 131472470 131472922 -18044115 + RMER5 LTR ERV1 61 525 -9 7 1588 1836 200 79 31 chr6 131473067 131473512 -18043525 + RLTR40 LTR ERVK 1 466 -351 7 1588 301 234 83 21 chr6 131473683 131473779 -18043258 + MT2B LTR ERVL 177 278 -323 7 1588 822 82 0 0 chr6 131473694 131473804 -18043233 + B1_Mus1 SINE Alu 37 146 -2 7 1588 404 53 39 13 chr6 131473804 131473881 -18043156 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 7 1588 553 244 7 43 chr6 131474005 131474146 -18042891 - RMER12 LTR ERVK -1186 136 1 7 1588 2275 230 40 6 chr6 131474146 131474692 -18042345 - Lx5 LINE L1 -401 6649 6085 7 1588 2871 157 6 0 chr6 131474703 131475375 -18041662 + Lx5 LINE L1 5397 6077 -973 7 1588 884 297 63 8 chr6 131475514 131475752 -18041285 - B4A SINE B4 0 292 42 7 1588 392 315 70 86 chr6 131476100 131476357 -18040680 + B4 SINE B4 4 256 -36 7 1588 463 376 12 24 chr6 131476865 131477034 -18040003 + B4A SINE B4 58 224 -68 7 1588 240 59 0 0 chr6 131477037 131477071 -18039966 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1588 244 187 22 167 chr6 131477071 131477161 -18039876 + B4A SINE B4 216 292 0 7 1588 386 207 0 0 chr6 131477161 131477248 -18039789 + (CA)n Simple_repeat Simple_repeat 1 87 0 7 1588 453 185 28 23 chr6 131477264 131477441 -18039596 + (CATA)n Simple_repeat Simple_repeat 1 178 0 7 1588 406 213 30 13 chr6 131477441 131477678 -18039359 + (CA)n Simple_repeat Simple_repeat 1 241 0 7 1588 486 0 0 0 chr6 131477678 131477732 -18039305 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 1588 6202 81 24 21 chr6 131478122 131478651 -18038386 - L1Md_F2 LINE L1 -88 6494 5962 7 1588 3720 39 5 0 chr6 131478651 131479085 -18037952 + RLTR10C LTR ERVK 1 436 0 7 1588 6202 89 23 10 chr6 131479085 131479935 -18037102 - L1Md_F2 LINE L1 -621 5961 5096 7 1588 18912 168 6 83 chr6 131479935 131486603 -18030434 - L1Md_F2 LINE L1 -11 6571 446 7 1588 5861 76 0 0 chr6 131486621 131487438 -18029599 - L1_Mm LINE L1 -777 5106 4290 7 1588 207 0 0 0 chr6 131487553 131487576 -18029461 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1588 1703 223 41 3 chr6 131487615 131487983 -18029054 + RLTR14 LTR ERV1 1 382 0 7 1588 285 271 14 101 chr6 131488245 131488454 -18028583 - L1M3 LINE L1 -3818 2322 2132 7 1588 212 167 71 20 chr6 131488455 131488553 -18028484 + (TTATA)n Simple_repeat Simple_repeat 5 107 0 7 1588 33 25 0 0 chr6 131488561 131488601 -18028436 + AT_rich Low_complexity Low_complexity 1 40 0 7 1588 570 207 30 112 chr6 131489064 131489233 -18027804 + B3 SINE B2 61 215 -1 7 1588 270 81 0 0 chr6 131489927 131489964 -18027073 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1588 2724 34 0 6 chr6 131490234 131490558 -18026479 - RLTRETN_Mm LTR ERVK 0 322 1 7 1588 1416 44 0 0 chr6 131490774 131490954 -18026083 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1588 449 260 18 3 chr6 131491007 131491119 -18025918 - PB1D10 SINE Alu -4 123 3 7 1588 949 102 3 0 chr6 131491651 131491804 -18025233 - L1Md_F2 LINE L1 -221 6361 6205 7 1588 1491 108 9 4 chr6 131491804 131492037 -18025000 + L1Md_F2 LINE L1 6349 6582 0 7 1588 468 249 0 43 chr6 131492084 131492222 -18024815 + B3A SINE B2 7 129 -87 7 1588 325 269 34 20 chr6 131492421 131492454 -18024583 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 7 1588 186 43 0 0 chr6 131492454 131492477 -18024560 + (TC)n Simple_repeat Simple_repeat 1 23 0 7 1588 325 269 34 20 chr6 131492477 131492591 -18024446 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 7 1588 35 83 0 0 chr6 131492946 131493030 -18024007 + AT_rich Low_complexity Low_complexity 1 84 0 7 1588 210 381 12 12 chr6 131493140 131493225 -18023812 - L3 LINE CR1 -356 4133 4049 7 1588 218 203 47 0 chr6 131493379 131493443 -18023594 + T-rich Low_complexity Low_complexity 5 71 0 7 1588 1185 82 0 0 chr6 131493987 131494134 -18022903 - B1_Mus1 SINE Alu 0 148 2 7 1588 1640 247 11 16 chr6 131495600 131495970 -18021067 - MTC LTR MaLR -53 368 1 7 1588 2387 142 38 42 chr6 131496235 131496712 -18020325 - IAPLTR2_Mm LTR ERVK 0 475 1 7 1588 24697 14 14 0 chr6 131496712 131499627 -18017410 - IAPEz-int LTR ERVK 0 6481 3525 7 1588 869 81 24 0 chr6 131499627 131499750 -18017287 - IAPEY3-int LTR ERVK -2770 4910 4785 7 1588 1713 115 8 0 chr6 131499747 131499999 -18017038 - IAPEY3-int LTR ERVK -5183 2497 2244 7 1588 424 38 0 0 chr6 131500008 131500061 -18016976 - IAPEz-int LTR ERVK -5070 1411 1359 1 1588 4512 49 31 15 chr6 131500061 131500679 -18016358 - IAPEz-int LTR ERVK -5819 662 35 1 1588 2385 142 38 42 chr6 131500689 131501166 -18015871 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1588 899 83 0 0 chr6 131501616 131501737 -18015300 + B1_Mus1 SINE Alu 3 123 -25 3 1588 471 239 60 66 chr6 131501737 131501772 -18015265 + ID_B1 SINE B4 113 244 -48 4 1588 333 0 0 0 chr6 131502988 131503025 -18014012 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1588 363 293 13 32 chr6 131503299 131503454 -18013583 + CT-rich Low_complexity Low_complexity 3 154 0 6 1588 568 226 51 7 chr6 131503455 131503593 -18013444 - B1F SINE Alu -1 148 5 7 1588 6162 94 37 4 chr6 131503996 131504531 -18012506 - L1_Mus2 LINE L1 -2 6564 6000 8 1588 3322 43 2 0 chr6 131504531 131504925 -18012112 - MTA_Mm LTR MaLR 0 396 2 9 1588 6162 112 34 4 chr6 131504925 131505681 -18011356 - L1_Mus2 LINE L1 -567 5999 5226 8 1588 237 284 0 15 chr6 131505905 131505973 -18011064 + Tigger5 DNA MER2_type 2338 2404 -2 1 1588 579 244 71 31 chr6 131506136 131506263 -18010774 - ID_B1 SINE B4 -9 215 84 1 1588 390 250 0 80 chr6 131507033 131507146 -18009891 - ID_B1 SINE B4 0 224 121 1 1588 1713 186 64 111 chr6 131507260 131507763 -18009274 + RLTR20A LTR ERVK 5 439 -102 1 1588 531 122 0 0 chr6 131507763 131507853 -18009184 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 1588 1713 184 66 126 chr6 131507853 131507942 -18009095 + RLTR20A LTR ERVK 440 540 -1 1 1588 1257 153 67 0 chr6 131508107 131508316 -18008721 + RMER6D LTR ERVK 1 223 -497 1 1588 212 312 0 0 chr6 131508926 131508990 -18008047 + ID SINE ID 1 64 -160 1 1588 2108 135 50 18 chr6 131509211 131509587 -18007450 + ORR1A3 LTR MaLR 1 413 -8 1 1588 1492 231 6 75 chr6 131509591 131509756 -18007281 + MTC LTR MaLR 60 208 -213 1 1588 8495 33 0 0 chr6 131509756 131510751 -18006286 + L1Md_A LINE L1 5588 6582 0 1 1588 1492 231 6 75 chr6 131510751 131510918 -18006119 + MTC LTR MaLR 209 369 -52 1 1588 1961 201 72 81 chr6 131510920 131511103 -18005934 + RMER6D LTR ERVK 207 390 -330 2 1588 4729 130 3 13 chr6 131511103 131511120 -18005917 - Lx3A LINE L1 0 6981 6967 2 1588 225 0 0 0 chr6 131511120 131511145 -18005892 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2 1588 4729 130 3 13 chr6 131511145 131511875 -18005162 - Lx3A LINE L1 -15 6966 6242 2 1588 1961 201 72 81 chr6 131511875 131512188 -18004849 + RMER6D LTR ERVK 391 699 -21 2 1588 572 314 55 16 chr6 131512225 131512536 -18004501 - L1M2 LINE L1 -984 5159 4837 2 1588 359 286 18 18 chr6 131512531 131512712 -18004325 - L1M2 LINE L1 -2300 3843 3663 2 1588 244 199 110 45 chr6 131512773 131512855 -18004182 - PB1D10 SINE Alu -33 116 25 2 1588 1209 97 38 5 chr6 131513103 131513289 -18003748 - B2_Mm2 SINE B2 -3 192 1 2 1588 237 98 0 0 chr6 131513298 131513339 -18003698 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1588 5786 45 0 0 chr6 131514058 131514807 -18002230 + L1_Mm LINE L1 2390 3138 -2745 2 1588 3976 163 10 24 chr6 131514809 131515835 -18001202 - L1Md_A LINE L1 -4445 1438 217 2 1588 5584 82 2 2 chr6 131515836 131516653 -18000384 - L1_Mm LINE L1 -777 5106 4290 2 1588 186 43 0 0 chr6 131516768 131516791 -18000246 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1588 1618 215 82 3 chr6 131516830 131517184 -17999853 + RLTR14 LTR ERV1 1 382 0 3 1588 279 271 14 105 chr6 131517435 131517645 -17999392 - L1M2 LINE L1 -3818 2322 2132 2 1588 58 90 0 0 chr6 131517645 131517801 -17999236 + AT_rich Low_complexity Low_complexity 1 156 0 3 1588 570 207 30 112 chr6 131518254 131518423 -17998614 + B3 SINE B2 61 215 -1 3 1588 33442 47 2 3 chr6 131518553 131523758 -17993279 + L1Md_T LINE L1 291 5589 -297 3 1588 8398 36 1 0 chr6 131523758 131524753 -17992284 + L1Md_T LINE L1 5590 6585 0 3 1588 30961 79 7 1 chr6 131524926 131530109 -17986928 + L1Md_F2 LINE L1 368 5586 -297 3 1588 7886 54 1 3 chr6 131530109 131531098 -17985939 + L1Md_F2 LINE L1 5587 6573 -9 3 1588 378 61 0 0 chr6 131531609 131531658 -17985379 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1588 1428 39 0 0 chr6 131532144 131532323 -17984714 + (TCTCC)n Simple_repeat Simple_repeat 1 179 0 3 1588 456 303 0 0 chr6 131532389 131532498 -17984539 - PB1D10 SINE Alu -6 111 3 3 1588 1045 89 3 0 chr6 131533027 131533188 -17983849 - L1Md_F2 LINE L1 -221 6361 6197 3 1588 1605 71 9 4 chr6 131533188 131533413 -17983624 + L1Md_F2 LINE L1 6357 6582 0 3 1588 468 243 15 27 chr6 131533460 131533587 -17983450 + B3A SINE B2 7 131 -64 4 1588 344 264 43 6 chr6 131533797 131533961 -17983076 + (TCTA)n Simple_repeat Simple_repeat 4 173 0 4 1588 33 85 0 0 chr6 131534318 131534400 -17982637 + AT_rich Low_complexity Low_complexity 1 82 0 4 1588 200 381 12 12 chr6 131534510 131534595 -17982442 - L3 LINE CR1 -356 4133 4049 4 1588 180 0 0 0 chr6 131535327 131535347 -17981690 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1588 1076 122 0 0 chr6 131535347 131535494 -17981543 - B1_Mus1 SINE Alu 0 148 2 4 1588 1707 247 10 14 chr6 131536947 131537333 -17979704 - MTC LTR MaLR -53 368 1 4 1588 282 307 27 0 chr6 131537565 131537640 -17979397 + ID4 SINE ID 7 83 0 4 1588 1016 96 0 0 chr6 131538039 131538175 -17978862 + B1_Mus1 SINE Alu 1 136 -12 4 1588 801 31 0 0 chr6 131538179 131538275 -17978762 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 4 1588 378 0 0 0 chr6 131539491 131539533 -17977504 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1588 363 293 13 32 chr6 131539807 131539962 -17977075 + CT-rich Low_complexity Low_complexity 3 154 0 5 1588 548 250 50 7 chr6 131539963 131540104 -17976933 - B1F SINE Alu -1 148 2 5 1588 6386 105 5 2 chr6 131540500 131541751 -17975286 - L1_Mus2 LINE L1 -2 6564 5309 5 1588 3258 108 6 0 chr6 131541761 131542233 -17974804 - L1_Mus1 LINE L1 0 6567 6093 5 1588 2805 189 53 124 chr6 131542241 131543104 -17973933 + RLTR13D1 LTR ERVK 5 806 0 5 1588 5849 111 8 6 chr6 131543104 131544035 -17973002 - L1_Mus1 LINE L1 -471 6096 5172 5 1588 2634 78 0 11 chr6 131544035 131544400 -17972637 - L1Md_F2 LINE L1 -13 6569 6209 5 1588 5849 140 7 13 chr6 131544400 131544701 -17972336 - L1_Mus1 LINE L1 -712 5171 4865 5 1588 32723 57 25 16 chr6 131544699 131549416 -17967621 + L1Md_F LINE L1 101 4917 -966 5 1588 229 183 46 77 chr6 131549416 131549481 -17967556 - RMER20A LTR ERVK -268 248 186 5 1588 32723 57 25 16 chr6 131549481 131550135 -17966902 + L1Md_F LINE L1 4918 5586 -297 5 1588 8045 52 2 0 chr6 131550135 131551129 -17965908 + L1Md_T LINE L1 5587 6582 0 6 1588 20545 126 32 2 chr6 131551132 131554807 -17962230 - L1_Mus1 LINE L1 -1018 4865 1079 5 1588 2347 144 20 2 chr6 131554809 131555206 -17961831 - RLTR9E LTR ERVK -5 404 1 6 1588 4094 119 50 0 chr6 131555206 131555846 -17961191 - L1VL1 LINE L1 -5532 890 219 6 1588 3240 99 4 0 chr6 131555865 131556320 -17960717 + L1_Mus2 LINE L1 6108 6564 -2 6 1588 226 159 29 0 chr6 131557558 131557627 -17959410 + A-rich Low_complexity Low_complexity 1 71 0 6 1588 384 69 0 33 chr6 131557873 131557933 -17959104 + B1_Mus2 SINE Alu 2 59 -88 6 1588 239 188 112 56 chr6 131558013 131558120 -17958917 + RLTR25B LTR ERVK 397 509 -519 6 1588 748 78 0 0 chr6 131558057 131558154 -17958883 + B1_Mus2 SINE Alu 42 138 -9 6 1588 288 70 0 0 chr6 131558154 131558197 -17958840 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1588 184 0 30 61 chr6 131558221 131558254 -17958783 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 6 1588 2266 188 52 16 chr6 131559051 131559672 -17957365 - L1_Mur1 LINE L1 -1914 3972 3330 6 1588 4356 161 58 24 chr6 131559672 131560544 -17956493 + RLTR13D6 LTR ERVK 1 902 0 7 1588 11282 125 20 22 chr6 131560544 131560883 -17956154 - L1VL2 LINE L1 -583 3032 2700 7 1588 296 64 21 0 chr6 131560883 131560930 -17956107 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 7 1588 11282 125 20 22 chr6 131560930 131562478 -17954559 - L1VL2 LINE L1 -916 2699 1135 7 1588 279 0 0 0 chr6 131562478 131562509 -17954528 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7 1588 11282 138 19 9 chr6 131562509 131563091 -17953946 - L1VL2 LINE L1 -2481 1134 557 7 1588 443 258 21 0 chr6 131563600 131563697 -17953340 + B3A SINE B2 1 99 -99 7 1588 10079 109 20 9 chr6 131563835 131566219 -17950818 - L1_Mus2 LINE L1 0 6566 4153 7 1588 6154 119 16 4 chr6 131566214 131567413 -17949624 - L1_Mus1 LINE L1 0 6567 5356 7 1588 27012 122 9 2 chr6 131567431 131573583 -17943454 - L1_Mus1 LINE L1 -2 6565 369 7 1588 488 349 66 12 chr6 131574357 131574598 -17942439 - MT2A LTR ERVL -1 532 279 7 1588 291 38 57 0 chr6 131574678 131574731 -17942306 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 7 1588 302 348 52 52 chr6 131574733 131574894 -17942143 - MT2A LTR ERVL -263 270 109 7 1588 1704 194 62 0 chr6 131574894 131575250 -17941787 - ORR1C1 LTR MaLR 0 378 1 8 1588 302 348 52 52 chr6 131575250 131575358 -17941679 - MT2A LTR ERVL -425 108 1 7 1588 1170 272 49 63 chr6 131575358 131575930 -17941107 - MERVL_2A-int LTR ERVL 0 5761 5198 7 1588 1635 297 40 19 chr6 131575934 131576462 -17940575 - MTE-int LTR MaLR -1035 545 7 8 1588 792 330 107 45 chr6 131576467 131576955 -17940082 - MT2A LTR ERVL 0 533 16 8 1588 334 19 0 70 chr6 131577288 131577345 -17939692 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 8 1588 453 313 92 82 chr6 131577551 131577854 -17939183 - RLTR17 LTR ERVK -266 426 121 8 1588 268 164 15 0 chr6 131578095 131578162 -17938875 - Lx9 LINE L1 -8 7636 7569 8 1588 217 376 10 41 chr6 131578182 131578279 -17938758 - PB1D10 SINE Alu -21 96 3 8 1588 240 330 10 0 chr6 131578323 131578420 -17938617 + CT-rich Low_complexity Low_complexity 3 100 0 8 1588 279 0 0 0 chr6 131578616 131578647 -17938390 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1588 879 256 19 4 chr6 131578717 131578980 -17938057 - L1MA4 LINE L1 -396 5904 5638 8 1588 349 286 97 9 chr6 131579314 131579427 -17937610 + B4 SINE B4 76 198 -94 9 1588 638 231 15 22 chr6 131579328 131579465 -17937572 + B1_Mur1 SINE Alu 9 144 -5 9 1588 415 198 12 0 chr6 131581239 131581320 -17935717 + MER53 DNA hAT 1 82 -111 9 1588 2990 212 84 96 chr6 131581589 131581727 -17935310 - RMER1B Other Other -9 1057 939 9 1588 258 32 0 0 chr6 131581727 131581758 -17935279 + (CCA)n Simple_repeat Simple_repeat 1 31 0 9 1588 2990 212 84 96 chr6 131581758 131582317 -17934720 - RMER1B Other Other -128 938 419 9 1588 432 0 0 0 chr6 131582317 131582365 -17934672 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1588 2990 212 84 96 chr6 131582365 131582691 -17934346 - RMER1B Other Other -648 418 46 9 1588 344 280 25 25 chr6 131582851 131582972 -17934065 + Lx5 LINE L1 6930 7050 0 9 1588 312 280 40 33 chr6 131582990 131583263 -17933774 + L1M4 LINE L1 5121 5395 -751 9 1588 237 269 153 21 chr6 131583466 131583701 -17933336 + L1MD LINE L1 5573 5838 -2157 9 1588 5078 58 2 0 chr6 131583828 131584463 -17932574 + L1Md_F2 LINE L1 5935 6570 -12 9 1588 39 0 0 0 chr6 131585228 131585267 -17931770 + AT_rich Low_complexity Low_complexity 1 39 0 1 1588 855 246 76 7 chr6 131585267 131585558 -17931479 - Lx7 LINE L1 -11 7685 7375 1 1588 826 150 0 0 chr6 131585555 131585688 -17931349 - Lx7 LINE L1 -758 6938 6806 1 1588 2322 165 37 4 chr6 131585689 131586146 -17930891 - L1_Mur3 LINE L1 -10 5870 5399 1 1588 429 257 124 0 chr6 131586147 131586252 -17930785 - B1F SINE Alu -17 132 15 1 1588 271 345 98 32 chr6 131586252 131586270 -17930767 - ID_B1 SINE B4 -17 207 77 1 1588 33739 70 4 14 chr6 131586989 131593117 -17923920 - L1Md_F2 LINE L1 -12 6570 510 1 1588 486 0 0 0 chr6 131593126 131593180 -17923857 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 1 1588 820 281 19 132 chr6 131593187 131593273 -17923764 - Lx8 LINE L1 -147 7326 7244 1 1588 4221 53 11 0 chr6 131593273 131593801 -17923236 - L1Md_F3 LINE L1 0 6584 6051 1 1588 820 281 19 132 chr6 131593801 131594129 -17922908 - Lx8 LINE L1 -230 7243 6959 1 1588 495 206 0 61 chr6 131594532 131594630 -17922407 - B3 SINE B2 -124 92 1 1 1588 916 245 124 72 chr6 131594844 131595191 -17921846 + MTD LTR MaLR 41 405 -14 1 198 751 46 46 0 chr6 131596189 131596298 -17920739 + (TTTTC)n Simple_repeat Simple_repeat 2 115 0 1 1589 1777 148 37 51 chr6 131596307 131596662 -17920375 - Lx3C LINE L1 -2 6974 6625 1 1589 2758 117 17 11 chr6 131596671 131597131 -17919906 - Lx3C LINE L1 -515 6461 5999 1 1589 2415 214 70 28 chr6 131597130 131597770 -17919267 - L1_Mur3 LINE L1 -6764 948 282 1 1589 298 310 19 29 chr6 131598455 131598558 -17918479 - PB1D10 SINE Alu -15 102 1 1 1589 662 238 82 59 chr6 131598927 131599085 -17917952 - ERVL-B4-int LTR ERVL -1066 4648 4499 1 1589 693 66 0 0 chr6 131599085 131599176 -17917861 + (TTCC)n Simple_repeat Simple_repeat 1 91 0 1 1589 662 238 82 59 chr6 131599176 131599272 -17917765 - ERVL-B4-int LTR ERVL -1216 4498 4388 1 1589 511 306 13 67 chr6 131599269 131599493 -17917544 - ERVL-B4-int LTR ERVL -1296 4465 4254 1 1589 454 36 0 0 chr6 131599495 131599550 -17917487 - L1_Mus4 LINE L1 -980 5656 5602 1 1589 3317 111 31 12 chr6 131599550 131600090 -17916947 + L1_Mus4 LINE L1 6116 6636 0 1 1589 445 169 0 0 chr6 131600770 131600841 -17916196 + RLTR26 LTR ERVK 568 638 -4 1 1589 768 295 31 44 chr6 131600843 131601378 -17915659 - RLTR18 LTR ERVK -150 362 1 1 1589 1402 249 114 11 chr6 131601405 131601774 -17915263 - MTD LTR MaLR 0 419 13 1 1589 351 0 0 0 chr6 131601774 131601813 -17915224 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1589 210 85 85 0 chr6 131601813 131601860 -17915177 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 1 1589 837 297 92 22 chr6 131601860 131602176 -17914861 - MTEa LTR MaLR 0 379 42 1 1589 751 197 23 0 chr6 131602179 131602311 -17914726 - B1_Mur4 SINE Alu -7 143 9 1 1589 504 0 0 0 chr6 131602368 131602424 -17914613 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 1 1589 2443 106 52 96 chr6 131602429 131602508 -17914529 - BGLII_Mus LTR ERVK 0 422 376 1 1589 4397 113 8 0 chr6 131602508 131603146 -17913891 + L1_Mus3 LINE L1 5989 6631 -7 1 1589 2443 106 52 96 chr6 131603146 131603434 -17913603 - BGLII_Mus LTR ERVK -47 375 73 1 1589 4294 21 0 0 chr6 131603434 131603916 -17913121 - LTRIS_Mm LTR ERV1 0 482 1 1 1589 2443 106 52 96 chr6 131603916 131603987 -17913050 - BGLII_Mus LTR ERVK -350 72 2 1 1589 594 0 0 0 chr6 131603987 131604053 -17912984 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 1 1589 869 329 49 27 chr6 131604247 131604333 -17912704 - L1MA4 LINE L1 -279 6021 5939 1 1589 459 0 0 0 chr6 131604333 131604384 -17912653 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1589 955 318 60 11 chr6 131604384 131604954 -17912083 - L1MA4 LINE L1 -362 5938 5351 1 1589 788 313 6 0 chr6 131604959 131605138 -17911899 - ID_B1 SINE B4 -3 221 42 1 1589 22 0 0 0 chr6 131605235 131605257 -17911780 + AT_rich Low_complexity Low_complexity 1 22 0 1 1589 390 192 293 0 chr6 131605294 131605393 -17911644 + RMER1A Other Other 336 463 -567 1 1589 376 208 38 0 chr6 131605391 131605497 -17911540 + RMER1A Other Other 920 1029 -1 1 1589 8099 25 0 0 chr6 131605779 131606987 -17910050 - L1Md_T LINE L1 0 6582 5375 1 1589 14761 17 2 0 chr6 131606986 131608776 -17908261 + L1Md_T LINE L1 3560 5352 -531 1 1589 3754 49 13 2 chr6 131611302 131611772 -17905265 - MT2C_Mm LTR ERVL 0 475 1 1 1589 3355 164 7 0 chr6 131611888 131612481 -17904556 - L1_Mur2 LINE L1 -1 5885 5289 1 1589 5092 139 88 8 chr6 131612485 131613382 -17903655 - Lx2 LINE L1 -8 6989 6021 1 1589 2303 143 35 2 chr6 131613382 131613915 -17903122 + Lx2 LINE L1 5448 5993 -1004 1 1589 11323 170 18 25 chr6 131613903 131614737 -17902300 - L1_Mur2 LINE L1 -571 5306 4460 1 1589 3953 54 0 10 chr6 131614737 131615226 -17901811 - L1_Mus1 LINE L1 0 6567 6084 1 1589 11323 170 18 25 chr6 131615226 131616810 -17900227 - L1_Mur2 LINE L1 -1418 4459 2906 1 1589 1160 145 0 25 chr6 131616810 131617008 -17900029 - RLTR22_Mur LTR ERVK 0 1848 1656 1 1589 468 0 0 0 chr6 131617008 131617060 -17899977 + (TTTC)n Simple_repeat Simple_repeat 2 53 0 1 1589 737 83 0 18 chr6 131617060 131617171 -17899866 + (TCCC)n Simple_repeat Simple_repeat 1 109 0 1 1589 516 16 0 0 chr6 131617171 131617232 -17899805 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 1 1589 2562 153 71 16 chr6 131617236 131617727 -17899310 - L1_Mus4 LINE L1 -12 6624 6107 1 1589 555 29 0 0 chr6 131617725 131617795 -17899242 + L1_Mus4 LINE L1 6042 6111 -525 1 1589 2010 135 34 17 chr6 131617794 131618206 -17898831 + Lx LINE L1 6189 6654 0 1 1589 204 97 0 0 chr6 131618264 131618295 -17898742 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1 1589 315 250 0 0 chr6 131618695 131618763 -17898274 + B1_Mm SINE Alu 80 147 0 1 1589 374 356 34 8 chr6 131618933 131618999 -17898038 + B4 SINE B4 16 84 -208 1 1589 327 338 70 49 chr6 131618999 131619142 -17897895 + B1_Mm SINE Alu 1 146 -1 1 1589 200 167 0 0 chr6 131619439 131619469 -17897568 + polypyrimidine Low_complexity Low_complexity 3 32 0 1 1589 5956 69 8 11 chr6 131619778 131621479 -17895558 + L1Md_Gf LINE L1 278 2070 -3816 1 1589 16012 75 5 1 chr6 131621470 131623713 -17893324 + L1Md_Gf LINE L1 3337 5590 -296 1 1589 7768 59 4 2 chr6 131623713 131624704 -17892333 + L1Md_F2 LINE L1 5588 6580 -2 1 1589 2418 179 117 33 chr6 131625397 131625944 -17891093 + RLTR25A LTR ERVK 1 593 -510 1 1589 251 247 24 83 chr6 131625869 131625953 -17891084 + MT2B2 LTR ERVL 205 283 -301 1 1589 2035 234 93 68 chr6 131626259 131626468 -17890569 + Lx6 LINE L1 6518 6567 -893 1 1589 996 83 15 0 chr6 131626468 131626601 -17890436 + B1_Mm SINE Alu 3 137 -10 1 1589 786 51 43 21 chr6 131626601 131626742 -17890295 + (CAAAA)n Simple_repeat Simple_repeat 2 145 0 1 1589 2035 259 129 64 chr6 131626742 131627537 -17889500 + Lx6 LINE L1 6568 7431 -29 1 1589 279 0 0 0 chr6 131627539 131627570 -17889467 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1589 767 231 0 0 chr6 131627596 131627739 -17889298 + B1_Mus2 SINE Alu 3 145 -2 1 1589 241 358 41 8 chr6 131629328 131629449 -17887588 + PB1 SINE Alu 1 125 -2 1 1589 29 28 0 0 chr6 131629503 131629539 -17887498 + AT_rich Low_complexity Low_complexity 1 36 0 1 1589 21 36 0 0 chr6 131629560 131629588 -17887449 + AT_rich Low_complexity Low_complexity 1 28 0 1 1589 11169 76 5 9 chr6 131630642 131632233 -17884804 + L1_Mur1 LINE L1 4090 5674 -212 1 1589 2216 110 3 3 chr6 131632235 131632554 -17884483 + Lx3_Mus LINE L1 6691 7009 0 1 1589 25 51 0 0 chr6 131632554 131632593 -17884444 + AT_rich Low_complexity Low_complexity 1 39 0 1 1589 1633 146 4 0 chr6 131632728 131632989 -17884048 + Lx3A LINE L1 6715 6976 -5 1 1589 30 0 0 0 chr6 131632990 131633020 -17884017 + AT_rich Low_complexity Low_complexity 1 30 0 1 1589 385 205 8 57 chr6 131633327 131633346 -17883691 - Lx3A LINE L1 0 6981 6966 1 1589 242 56 0 27 chr6 131633346 131633383 -17883654 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 1 1589 385 205 8 57 chr6 131633383 131633487 -17883550 - Lx3A LINE L1 -16 6965 6864 1 1589 905 181 97 55 chr6 131633788 131634005 -17883032 - URR1A DNA MER1_type 0 226 1 1 1589 379 333 0 0 chr6 131634058 131634181 -17882856 + (TG)n Simple_repeat Simple_repeat 2 124 0 1 1589 323 299 102 98 chr6 131636089 131636304 -17880733 + B4 SINE B4 77 292 0 1 1589 438 20 0 0 chr6 131636351 131636402 -17880635 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1589 288 269 47 19 chr6 131638376 131638482 -17878555 - Lx8 LINE L1 -1043 6430 6322 1 1589 1294 66 16 16 chr6 131640843 131641029 -17876008 - L1Md_F3 LINE L1 -2 6582 6397 1 1589 5066 115 37 2 chr6 131641116 131642036 -17875001 - Lx3_Mus LINE L1 -546 6463 5515 1 1589 2966 125 21 11 chr6 131642038 131642508 -17874529 + Lx3A LINE L1 6496 6970 -11 1 1589 190 95 48 0 chr6 131642509 131642551 -17874486 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 1589 695 159 13 7 chr6 131642555 131642707 -17874330 - L1_Mur1 LINE L1 -2159 3727 3575 1 1589 7244 82 11 0 chr6 131642728 131644241 -17872796 - L1_Mus1 LINE L1 -1 6566 5037 1 1589 1721 106 30 21 chr6 131644242 131644377 -17872660 - MusHAL1 LINE L1 -319 2393 2254 1 1589 4663 73 2 0 chr6 131644377 131644963 -17872074 + LTRIS_Mus LTR ERV1 1 587 0 1 1589 1721 106 30 21 chr6 131644963 131645165 -17871872 - MusHAL1 LINE L1 -459 2253 2053 1 1589 8012 153 214 7 chr6 131645163 131645308 -17871729 + Lx LINE L1 3704 3846 -2037 1 1589 195 42 0 0 chr6 131645308 131645332 -17871705 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1589 8012 142 129 7 chr6 131645332 131647691 -17869346 + Lx LINE L1 3847 6592 -62 1 1589 21 0 0 0 chr6 131647691 131647712 -17869325 + AT_rich Low_complexity Low_complexity 1 21 0 1 1589 209 161 0 0 chr6 131647871 131647902 -17869135 + (CAG)n Simple_repeat Simple_repeat 2 32 0 1 1589 186 71 0 0 chr6 131647911 131647939 -17869098 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1589 275 318 0 23 chr6 131648309 131648396 -17868641 - RMER5 LTR ERV1 -31 503 419 1 1589 6993 140 45 9 chr6 131648399 131649679 -17867358 + Lx3C LINE L1 5651 6976 0 1 1589 966 128 0 0 chr6 131649700 131649856 -17867181 + L1_Mur1 LINE L1 4448 4603 -1283 1 1589 258 227 12 4 chr6 131649963 131650053 -17866984 - L1M2 LINE L1 -855 5457 5366 1 1589 209 83 28 0 chr6 131650085 131650121 -17866916 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1589 2640 285 118 29 chr6 131650348 131651538 -17865499 - RMER1A Other Other -6 1024 15 1 1589 1213 227 31 131 chr6 131652070 131652430 -17864607 + RMER13B LTR ERVK 5 328 -580 1 1589 36291 46 2 16 chr6 131652430 131658593 -17858444 - L1Md_A LINE L1 -1 6581 511 1 1589 1275 213 39 19 chr6 131658594 131658852 -17858185 + RMER13B LTR ERVK 314 576 -332 1 1589 303 206 268 0 chr6 131658853 131658950 -17858087 + RMER1B Other Other 43 165 -901 1 1589 443 244 113 0 chr6 131658950 131659065 -17857972 + RMER20B LTR ERVK 1 128 -499 1 1589 5308 57 0 3 chr6 131660285 131660950 -17856087 + L1Md_F2 LINE L1 5908 6570 -12 2 1589 7072 37 0 0 chr6 131661487 131662370 -17854667 - L1Md_T LINE L1 0 6582 5700 2 1589 261 280 47 11 chr6 131662790 131662912 -17854125 + L1_Rod LINE L1 4586 4732 -1145 2 1589 31895 47 7 9 chr6 131663289 131669406 -17847631 - L1Md_T LINE L1 -1 6584 381 2 1589 352 344 64 79 chr6 131670389 131670717 -17846320 + RLTR25B LTR ERVK 1 323 -705 2 1589 333 0 0 0 chr6 131670882 131670919 -17846118 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 2 1589 562 278 8 34 chr6 131671610 131671816 -17845221 + L1_Rod LINE L1 5459 5657 -676 2 1589 4599 75 2 0 chr6 131671832 131672423 -17844614 - L1_Mus1 LINE L1 0 6567 5976 2 1589 2427 106 3 80 chr6 131672423 131672812 -17844225 + RLTR10D LTR ERVK 1 359 0 2 1589 1333 73 0 0 chr6 131672812 131672989 -17844048 + IAP-d-int LTR ERVK 1 177 -6365 2 1589 592 263 0 0 chr6 131672983 131673139 -17843898 + IAP-d-int LTR ERVK 347 502 -6040 2 1589 7905 56 0 1 chr6 131673139 131674158 -17842879 + IAP-d-int LTR ERVK 5006 6023 -519 2 1589 3207 61 7 0 chr6 131674160 131674572 -17842465 + IAP-d-int LTR ERVK 6128 6542 0 2 1589 2279 117 0 91 chr6 131674572 131674967 -17842070 + RLTR10D LTR ERVK 1 359 0 2 1589 843 80 0 0 chr6 131674967 131675092 -17841945 - L1_Mus2 LINE L1 -585 5981 5857 2 1589 336 236 24 0 chr6 131675093 131675190 -17841847 + L1_Rod LINE L1 5642 5794 -497 2 1589 601 254 137 47 chr6 131675364 131675620 -17841417 - RMER20B LTR ERVK -215 412 134 2 1589 1110 238 17 0 chr6 131679483 131679723 -17837314 - Lx5 LINE L1 -154 6896 6653 2 1589 294 321 0 35 chr6 131679736 131679849 -17837188 - RNLTR23 LTR ERVK 0 642 534 2 1589 282 115 0 0 chr6 131679849 131679901 -17837136 + L1_Mus2 LINE L1 2058 2109 -3774 2 1589 19863 117 13 4 chr6 131680493 131680775 -17836262 + L1_Mus2 LINE L1 2583 2865 -3018 2 1589 585 76 0 0 chr6 131680775 131680854 -17836183 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 2 1589 19863 117 13 4 chr6 131680854 131681445 -17835592 + L1_Mus2 LINE L1 2866 3477 -2406 2 1589 279 0 0 0 chr6 131681445 131681476 -17835561 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1589 19863 112 14 3 chr6 131681476 131684544 -17832493 + L1_Mus2 LINE L1 3478 6566 0 2 1589 1985 137 9 33 chr6 131684559 131684914 -17832123 + MusHAL1 LINE L1 195 542 -2170 2 1589 2888 60 10 40 chr6 131684914 131685314 -17831723 - RLTR10 LTR ERVK -2 388 1 2 1589 1985 137 9 33 chr6 131685314 131685380 -17831657 + MusHAL1 LINE L1 543 606 -2106 2 1589 27667 114 9 6 chr6 131685389 131691534 -17825503 - L1Md_F2 LINE L1 -11 6571 409 2 1589 752 265 5 34 chr6 131691537 131691744 -17825293 + RMER19C LTR ERVK 406 606 -5 2 1589 7944 185 96 47 chr6 131691745 131692969 -17824068 + L1_Mur2 LINE L1 808 2082 -3795 2 1589 1176 62 7 0 chr6 131692969 131693115 -17823922 + B1_Mm SINE Alu 1 147 0 2 1589 7944 177 47 63 chr6 131693115 131694435 -17822602 + L1_Mur2 LINE L1 2083 3390 -2487 2 1589 1674 201 118 0 chr6 131694480 131694843 -17822194 + RMER13A LTR ERVK 105 510 -350 2 1589 3761 117 35 1 chr6 131694854 131695504 -17821533 - MusHAL1 LINE L1 -1155 1557 886 2 1589 2487 295 69 89 chr6 131695505 131697040 -17819997 + RLTR22_Mur LTR ERVK 345 1848 0 2 1589 224 133 31 62 chr6 131697902 131697966 -17819071 + A-rich Low_complexity Low_complexity 2 63 0 2 1589 612 228 141 74 chr6 131698040 131698153 -17818884 + RMER12 LTR ERVK 1022 1161 -161 2 1589 1208 81 12 0 chr6 131698153 131698326 -17818711 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2 1589 612 228 141 74 chr6 131698326 131698482 -17818555 + RMER12 LTR ERVK 1162 1309 -13 2 1589 1061 285 31 31 chr6 131698486 131699000 -17818037 + L1_Rod LINE L1 5232 5745 -102 2 1589 23 33 0 0 chr6 131701610 131701640 -17815397 + AT_rich Low_complexity Low_complexity 1 30 0 2 1589 249 33 0 0 chr6 131702352 131702382 -17814655 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 1589 464 252 42 59 chr6 131702402 131702520 -17814517 - RSINE1 SINE B4 -36 129 14 2 1589 1396 275 18 2 chr6 131702561 131702962 -17814075 - Lx7 LINE L1 -519 7177 6771 2 1589 3423 153 39 11 chr6 131702962 131703608 -17813429 - L1_Mus3 LINE L1 0 6638 5975 2 1589 3815 166 17 6 chr6 131703612 131704320 -17812717 - L1VL2 LINE L1 -5487 848 133 2 1589 724 221 60 79 chr6 131704437 131704653 -17812384 + RMER19C LTR ERVK 400 611 0 2 1589 272 250 14 14 chr6 131704653 131704726 -17812311 - Lx6 LINE L1 -1080 6380 6308 2 1589 845 220 5 0 chr6 131704726 131704917 -17812120 - Lx6 LINE L1 -147 5733 5542 2 1589 610 194 123 0 chr6 131704949 131705119 -17811918 - Lx6 LINE L1 -1251 4629 4439 2 1589 2755 85 8 35 chr6 131705136 131705537 -17811500 - L1Md_F2 LINE L1 -11 6571 6182 2 1589 2444 74 6 49 chr6 131705541 131705961 -17811076 + ORR1A0-int LTR MaLR 1499 1792 0 2 1589 1388 60 0 0 chr6 131705961 131706144 -17810893 - L1Md_F2 LINE L1 -437 6145 5963 2 1589 1746 144 86 6 chr6 131706318 131706633 -17810404 + L1_Mus4 LINE L1 6295 6634 -2 2 1589 245 265 0 29 chr6 131706787 131706857 -17810180 - B1_Mm SINE Alu -8 139 72 2 1589 369 0 0 0 chr6 131707523 131707564 -17809473 + (CATA)n Simple_repeat Simple_repeat 4 44 0 2 1589 3283 33 10 2 chr6 131708000 131708393 -17808644 + MTA_Mm LTR MaLR 1 396 0 2 1589 26 50 0 0 chr6 131708553 131708593 -17808444 + AT_rich Low_complexity Low_complexity 1 40 0 2 1589 5854 155 25 13 chr6 131708594 131709643 -17807394 - Lx3A LINE L1 -13 6968 5908 2 1589 38651 16 2 6 chr6 131709643 131715993 -17801044 - L1Md_A LINE L1 -9 6573 254 2 1589 345 100 0 0 chr6 131716014 131716064 -17800973 + (T)n Simple_repeat Simple_repeat 1 50 0 2 1589 1992 108 181 0 chr6 131716064 131716443 -17800594 - Lx3A LINE L1 -1089 5920 5478 2 1589 438 36 0 0 chr6 131716458 131716514 -17800523 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1589 763 142 0 23 chr6 131716514 131716734 -17800303 + (TA)n Simple_repeat Simple_repeat 1 214 0 2 1589 505 224 4 0 chr6 131716734 131716866 -17800171 - L1_Mur1 LINE L1 -560 5613 5458 2 1589 1071 134 0 0 chr6 131716877 131717056 -17799981 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1589 1076 128 0 6 chr6 131717067 131717165 -17799872 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 1589 1237 72 0 22 chr6 131717165 131717349 -17799688 + (TATG)n Simple_repeat Simple_repeat 1 180 0 2 1589 1076 128 0 6 chr6 131717349 131717430 -17799607 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1589 356 193 23 0 chr6 131717418 131717506 -17799531 + (TATG)n Simple_repeat Simple_repeat 2 91 0 2 1589 324 161 0 0 chr6 131717509 131717571 -17799466 - Lx LINE L1 -27 6627 6566 2 1589 2732 198 36 32 chr6 131717571 131718321 -17798716 - L1_Mur1 LINE L1 -529 5348 4596 2 1589 13515 136 126 16 chr6 131718318 131723870 -17793167 - L1Md_F2 LINE L1 -6 6576 366 2 1589 3604 165 12 1 chr6 131723883 131724568 -17792469 - L1_Mur1 LINE L1 -1287 4590 3899 2 1589 1674 299 78 97 chr6 131724601 131725453 -17791584 - RMER13A LTR ERVK -25 835 1 2 1589 5685 206 38 69 chr6 131725453 131726075 -17790962 - L1_Mur1 LINE L1 -1973 3913 3299 2 1589 936 221 19 5 chr6 131726075 131726289 -17790748 - Lx2 LINE L1 -11 6986 6770 2 1589 5685 206 38 69 chr6 131726289 131726479 -17790558 - L1_Mur1 LINE L1 -2588 3298 3185 2 1589 183 42 0 0 chr6 131726479 131726503 -17790534 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1589 5685 206 38 69 chr6 131726503 131726868 -17790169 - L1_Mur1 LINE L1 -2702 3184 2814 2 1589 423 0 0 0 chr6 131726868 131726915 -17790122 + (TTG)n Simple_repeat Simple_repeat 1 47 0 2 198 5685 206 38 69 chr6 131726915 131727380 -17789657 - L1_Mur1 LINE L1 -3073 2813 2322 2 1590 2498 62 0 3 chr6 131727375 131727700 -17789337 - L1Md_F2 LINE L1 -566 6018 5695 2 1590 4263 59 13 4 chr6 131727700 131728247 -17788790 + L1Md_F2 LINE L1 6031 6582 0 2 1590 475 206 58 7 chr6 131728266 131728403 -17788634 - L1_Mur3 LINE L1 -2507 3373 3230 2 1590 1444 147 19 0 chr6 131728448 131728707 -17788330 - MusHAL1 LINE L1 -1583 1129 866 2 1590 5664 153 6 10 chr6 131728725 131729684 -17787353 - L1VL4 LINE L1 -5331 971 17 2 1590 228 100 0 0 chr6 131729684 131729714 -17787323 - L1VL4 LINE L1 -6260 42 13 2 1590 1807 165 112 41 chr6 131729715 131730296 -17786741 - L1VL4 LINE L1 -5511 824 121 2 1590 824 340 56 50 chr6 131730343 131730485 -17786552 - Lx9 LINE L1 0 7473 7331 2 1590 435 38 0 0 chr6 131730485 131730538 -17786499 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1590 1019 306 44 57 chr6 131730538 131731122 -17785915 - Lx9 LINE L1 -272 7372 6742 2 1590 375 342 70 26 chr6 131731123 131731401 -17785636 - Lx9 LINE L1 -994 6650 6266 2 1590 716 324 51 23 chr6 131731412 131731907 -17785130 + L1_Rod LINE L1 5222 5712 -135 2 1590 27 0 0 0 chr6 131734502 131734529 -17782508 + AT_rich Low_complexity Low_complexity 1 27 0 2 1590 3625 196 42 20 chr6 131736643 131737389 -17779648 + L1VL2 LINE L1 63 824 -5511 2 1590 25866 100 13 128 chr6 131737368 131742194 -17774843 + L1Md_F2 LINE L1 365 4476 -1407 2 1590 7263 82 10 4 chr6 131742194 131743183 -17773854 + L1Md_F2 LINE L1 5587 6581 -1 2 1590 25866 93 3 153 chr6 131743183 131744295 -17772742 + L1Md_F2 LINE L1 4477 5585 -298 2 1590 6646 102 4 40 chr6 131744296 131745325 -17771712 + L1Md_F2 LINE L1 5587 6578 -4 2 1590 10971 134 18 9 chr6 131745367 131747394 -17769643 + L1VL4 LINE L1 753 2797 -762 2 1590 502 218 7 15 chr6 131747420 131747555 -17769482 + L1_Mur1 LINE L1 1368 1501 -4376 2 1590 38343 7 0 0 chr6 131747555 131752927 -17764110 + L1Md_A LINE L1 214 5586 -297 2 1590 9008 3 0 0 chr6 131752927 131753923 -17763114 + L1Md_A LINE L1 5587 6582 0 2 1590 3602 216 15 2 chr6 131753923 131754769 -17762268 + L1_Mur1 LINE L1 1485 2341 -3545 2 1590 21860 190 22 60 chr6 131754774 131758741 -17758296 + L1_Mus1 LINE L1 177 4209 -1677 2 1590 2334 71 64 6 chr6 131758741 131759068 -17757969 + ORR1A1 LTR MaLR 1 346 0 2 1590 11949 81 56 2 chr6 131759068 131760768 -17756269 + ORR1A1-int LTR MaLR 1 1792 0 2 1590 2425 91 6 3 chr6 131760768 131760881 -17756156 + ORR1A1 LTR MaLR 1 113 -233 2 1590 1403 48 0 21 chr6 131760881 131761073 -17755964 + L1Md_F3 LINE L1 6397 6584 0 2 1590 2425 91 6 3 chr6 131761073 131761302 -17755735 + ORR1A1 LTR MaLR 114 344 -2 2 1590 21860 146 4 45 chr6 131761302 131763662 -17753375 + L1_Mus1 LINE L1 4210 6567 0 2 1590 233 57 0 28 chr6 131763685 131763721 -17753316 + (TAAAA)n Simple_repeat Simple_repeat 3 37 0 2 1590 5061 90 4 6 chr6 131763827 131764539 -17752498 + L1_Mus3 LINE L1 5923 6633 -5 2 1590 717 148 8 0 chr6 131764545 131764673 -17752364 + L1_Mur2 LINE L1 2315 2443 -3434 2 1590 929 155 0 0 chr6 131764674 131764835 -17752202 + L1_Mur2 LINE L1 4698 4858 -1019 2 1590 411 314 49 21 chr6 131765454 131765597 -17751440 - B1_Mm SINE Alu 0 147 1 2 1590 1008 49 21 0 chr6 131766367 131766510 -17750527 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 2 1590 327 203 0 0 chr6 131766514 131766588 -17750449 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1590 3050 181 20 8 chr6 131767101 131767690 -17749347 - Lx3A LINE L1 -9 6972 6377 2 1590 366 155 0 33 chr6 131767690 131767750 -17749287 - Lx3A LINE L1 -770 6203 6146 2 1590 1480 148 18 0 chr6 131771737 131771966 -17745071 - RLTR13D3 LTR ERVK -881 233 1 2 1590 327 316 122 8 chr6 131773912 131774167 -17742870 - Lx9 LINE L1 -157 7487 7204 2 1590 1840 235 5 5 chr6 131774169 131774537 -17742500 - RLTR21 LTR ERVK -1181 391 24 2 1590 20741 137 10 3 chr6 131774538 131779024 -17738013 + L1Md_F LINE L1 370 4921 -962 2 1590 287 230 14 0 chr6 131779024 131779098 -17737939 - L1VL1 LINE L1 -6156 266 192 2 1590 1544 58 0 1 chr6 131779106 131779330 -17737707 - L1Md_F2 LINE L1 -616 5951 5730 2 1590 4519 104 1 3 chr6 131779330 131779976 -17737061 + L1Md_F2 LINE L1 5930 6574 -8 2 1590 31 26 0 0 chr6 131780503 131780541 -17736496 + AT_rich Low_complexity Low_complexity 1 38 0 2 1590 27 73 0 0 chr6 131781346 131781401 -17735636 + AT_rich Low_complexity Low_complexity 1 55 0 2 1590 7815 176 20 10 chr6 131781514 131784106 -17732931 - Lx4A LINE L1 -3 7055 4423 2 1590 258 74 56 0 chr6 131784115 131784169 -17732868 + (TTG)n Simple_repeat Simple_repeat 2 58 0 2 1590 501 104 0 58 chr6 131784169 131784257 -17732780 - B1_Mus2 SINE Alu -10 137 29 2 1590 13560 124 9 13 chr6 131784258 131787488 -17729549 - L1VL1 LINE L1 -484 3214 1 2 1590 8148 158 105 6 chr6 131787488 131789069 -17727968 - Lx4A LINE L1 -2121 3756 2005 2 1590 408 55 0 0 chr6 131789069 131789124 -17727913 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1590 8148 158 105 6 chr6 131789124 131789306 -17727731 - Lx4A LINE L1 -3873 2004 1819 2 1590 2044 232 111 22 chr6 131789306 131789983 -17727054 + MYSERV6-int LTR ERVK 7954 8690 -269 2 1590 539 240 86 17 chr6 131789985 131790218 -17726819 + MYSERV-int LTR ERVK 6300 6548 -2 3 1590 656 290 34 80 chr6 131790220 131790569 -17726468 + RLTR15 LTR ERVK 1 333 -26 3 1590 1052 244 7 107 chr6 131790578 131790886 -17726151 - ORR1A4 LTR MaLR 0 329 53 3 1590 6714 158 52 29 chr6 131790888 131793215 -17723822 + Lx3C LINE L1 4597 6971 -5 3 1590 858 113 78 0 chr6 131793235 131793376 -17723661 + L1_Mur3 LINE L1 4440 4591 -1289 3 1590 229 169 119 0 chr6 131793490 131793549 -17723488 - L1M1 LINE L1 -850 5453 5388 3 1590 271 210 24 12 chr6 131793606 131793688 -17723349 + (TA)n Simple_repeat Simple_repeat 2 84 0 3 1590 180 77 0 0 chr6 131793793 131793819 -17723218 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 3 1590 2502 261 53 169 chr6 131793876 131795055 -17721982 - RMER1A Other Other -20 1046 4 3 1590 3415 225 36 63 chr6 131795577 131796417 -17720620 + RMER13B LTR ERVK 5 821 -87 3 1590 350 149 299 31 chr6 131797062 131797159 -17719878 + RMER1B Other Other 43 165 -901 3 1590 439 186 113 0 chr6 131797159 131797256 -17719781 + RMER20B LTR ERVK 1 108 -519 3 1590 266 338 89 19 chr6 131797785 131797942 -17719095 + MERVK26-int LTR ERVK 150 317 -6602 3 1590 22 35 0 0 chr6 131798827 131798856 -17718181 + AT_rich Low_complexity Low_complexity 1 29 0 3 1590 189 0 0 0 chr6 131799558 131799579 -17717458 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 1590 6380 173 15 15 chr6 131799621 131800855 -17716182 - L1_Mm LINE L1 -67 5816 4583 3 1590 4528 193 55 10 chr6 131800845 131801816 -17715221 + Lx2 LINE L1 5954 6997 0 3 1590 1634 255 30 14 chr6 131801835 131802344 -17714693 + L1_Mur2 LINE L1 5265 5781 -96 3 1590 253 222 14 14 chr6 131802532 131802605 -17714432 + (TTCTG)n Simple_repeat Simple_repeat 5 77 0 3 1590 309 151 0 0 chr6 131803099 131803152 -17713885 + CT-rich Low_complexity Low_complexity 1 53 0 3 1590 855 88 24 0 chr6 131803503 131803628 -17713409 - L1Md_F LINE L1 -1577 4306 4179 3 1590 6504 98 7 8 chr6 131803627 131804541 -17712496 + L1_Mus2 LINE L1 5653 6565 -1 3 1590 10658 106 13 19 chr6 131804698 131807265 -17709772 - L1Md_F LINE L1 -3235 2648 98 3 1590 2518 186 4 8 chr6 131807260 131807788 -17709249 + Lx3C LINE L1 5407 5932 -1044 3 1590 271 250 22 33 chr6 131807780 131807871 -17709166 + Lx9 LINE L1 6911 7000 -644 3 1590 2821 101 8 0 chr6 131807972 131808369 -17708668 - MTB LTR MaLR 0 400 1 3 1590 554 296 95 42 chr6 131808714 131808978 -17708059 - RLTR21 LTR ERVK -7 1565 1288 3 1590 192 40 0 0 chr6 131809070 131809095 -17707942 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 3 1590 3167 152 10 3 chr6 131809123 131809742 -17707295 + MusHAL1 LINE L1 1643 2265 -447 3 1590 534 129 0 0 chr6 131809742 131809827 -17707210 + (GGGA)n Simple_repeat Simple_repeat 2 86 0 3 1590 573 297 72 6 chr6 131810024 131810190 -17706847 + ETnERV2-int LTR ERVK 7045 7221 -185 3 1590 297 0 0 0 chr6 131811665 131811698 -17705339 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1590 711 118 7 62 chr6 131812077 131812221 -17704816 + Lx LINE L1 6442 6577 -77 3 1590 4202 159 40 16 chr6 131812278 131812807 -17704230 + MusHAL1 LINE L1 1555 2075 -637 3 1590 410 0 0 20 chr6 131812807 131812858 -17704179 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 1590 4202 159 40 16 chr6 131812858 131813185 -17703852 + MusHAL1 LINE L1 2076 2430 -282 3 1590 225 174 0 0 chr6 131813205 131813251 -17703786 + L1_Mur2 LINE L1 4320 4365 -1512 3 1590 307 111 0 0 chr6 131813252 131813306 -17703731 + L1_Mus3 LINE L1 6576 6629 -9 3 1590 27583 62 116 2 chr6 131813311 131818638 -17698399 - L1Md_F2 LINE L1 0 6582 647 3 1590 7840 186 45 11 chr6 131818654 131820345 -17696692 + Lx2 LINE L1 4148 5907 -1090 3 1590 216 0 0 0 chr6 131820345 131820369 -17696668 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1590 7840 151 52 9 chr6 131820369 131821409 -17695628 + Lx2 LINE L1 5908 6992 -5 3 1590 2273 158 37 30 chr6 131821754 131822190 -17694847 - Lx LINE L1 -2 6652 6214 3 1590 9266 161 21 14 chr6 131822200 131825404 -17691633 - Lx LINE L1 -671 5983 1084 3 1590 1124 111 5 50 chr6 131825404 131825604 -17691433 - L1_Mus2 LINE L1 -1 6565 6375 3 1590 4295 148 4 36 chr6 131825604 131826099 -17690938 - Lx LINE L1 -5551 1083 377 3 1590 21 36 0 0 chr6 131826976 131827004 -17690033 + AT_rich Low_complexity Low_complexity 1 28 0 3 1590 2152 299 27 37 chr6 131827068 131827607 -17689430 + Lx6 LINE L1 5851 6381 -1079 3 1590 1730 215 30 188 chr6 131827607 131828330 -17688707 - RMER19C LTR ERVK -2 609 1 3 1590 2152 299 27 37 chr6 131828330 131828579 -17688458 + Lx6 LINE L1 6382 6631 -829 3 1590 256 204 0 0 chr6 131828579 131828628 -17688409 + Lx7 LINE L1 6702 6750 -946 3 1590 1618 229 79 8 chr6 131828638 131829017 -17688020 + MTC LTR MaLR 8 413 -8 3 1590 1418 242 26 6 chr6 131829028 131829377 -17687660 + Lx7 LINE L1 6759 7114 -582 3 1590 282 95 0 0 chr6 131829598 131829640 -17687397 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 1590 38 39 0 0 chr6 131830956 131831008 -17686029 + AT_rich Low_complexity Low_complexity 1 52 0 3 1590 23 33 0 0 chr6 131831120 131831150 -17685887 + AT_rich Low_complexity Low_complexity 1 30 0 3 1590 3490 207 127 74 chr6 131831407 131832455 -17684582 - RLTR25A LTR ERVK 0 1103 1 3 1590 498 70 0 0 chr6 131832907 131832978 -17684059 + (TAAG)n Simple_repeat Simple_repeat 2 72 0 3 1590 1003 214 104 27 chr6 131832978 131833237 -17683800 + RMER17B LTR ERVK 5 283 -675 3 1590 1191 133 70 74 chr6 131833493 131833736 -17683301 + RLTR22_Mur LTR ERVK 1605 1846 -2 3 1590 310 360 20 20 chr6 131833736 131833821 -17683216 + ID_B1 SINE B4 131 215 -9 3 1590 887 227 10 26 chr6 131834084 131834401 -17682636 + L1VL4 LINE L1 800 1094 -5888 3 1590 809 269 20 24 chr6 131835248 131835541 -17681496 + Lx7 LINE L1 5991 6282 -1414 3 1590 283 253 10 50 chr6 131835536 131835636 -17681401 - L1_Rod LINE L1 -299 5548 5453 3 1590 468 0 0 0 chr6 131836358 131836410 -17680627 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 3 1590 296 321 47 98 chr6 131836729 131836943 -17680094 - RLTR25B LTR ERVK -825 203 1 3 1590 28 29 0 0 chr6 131837451 131837486 -17679551 + AT_rich Low_complexity Low_complexity 1 35 0 3 1590 533 233 147 0 chr6 131838123 131838239 -17678798 + ETnERV2-int LTR ERVK 7070 7202 -204 3 1590 1728 185 120 28 chr6 131838579 131839092 -17677945 + RMER16-int LTR ERVK 192 671 -4735 3 1590 551 236 24 0 chr6 131839092 131839215 -17677822 + RMER16-int LTR ERVK 935 1060 -5077 3 1590 937 215 84 5 chr6 131839217 131839432 -17677605 + ETnERV2-int LTR ERVK 2522 2753 -4653 3 1590 4587 116 25 1 chr6 131839458 131840147 -17676890 + ETnERV2-int LTR ERVK 3567 4271 -3135 3 1590 4526 161 93 105 chr6 131840147 131841368 -17675669 + RLTR45-int LTR ERVK 4886 6071 -1173 3 1590 836 257 22 10 chr6 131841370 131841698 -17675339 + RLTR45-int LTR ERVK 7506 7748 -469 3 1590 4336 176 16 4 chr6 131841755 131842455 -17674582 + RLTR45-int LTR ERVK 6495 7202 -204 3 1590 454 309 32 0 chr6 131843577 131843703 -17673334 - BGLII_B LTR ERVK -10 431 302 3 1590 302 250 0 0 chr6 131843703 131843775 -17673262 - L1_Mur3 LINE L1 -820 5060 4989 3 1590 19166 216 53 116 chr6 131843918 131845210 -17671827 + L1Md_F LINE L1 220 1426 -4457 3 1590 213 65 0 0 chr6 131845210 131845241 -17671796 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1590 19166 154 20 24 chr6 131845241 131848565 -17668472 + L1Md_F LINE L1 1427 4737 -1146 3 1590 252 0 0 0 chr6 131848565 131848593 -17668444 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 3 1590 19166 154 20 24 chr6 131848593 131848673 -17668364 + L1Md_F LINE L1 4738 4817 -1066 3 1590 34487 50 34 22 chr6 131848679 131850309 -17666728 - L1Md_F2 LINE L1 -12 6570 4905 3 1590 229 186 67 67 chr6 131850309 131850384 -17666653 + RMER20A LTR ERVK 174 248 -268 3 1590 34487 50 34 22 chr6 131850384 131854751 -17662286 - L1Md_F2 LINE L1 -12 4904 440 3 1590 355 104 0 0 chr6 131854750 131854798 -17662239 + L1Md_F LINE L1 4810 4857 -1026 3 1590 1632 185 17 90 chr6 131854798 131855220 -17661817 + RLTR9E LTR ERVK 19 409 0 3 1590 806 224 13 50 chr6 131855222 131855485 -17661552 + MMETn-int LTR ERVK 2 317 -2997 3 1590 360 152 0 17 chr6 131855540 131855600 -17661437 + RLTR45-int LTR ERVK 2091 2149 -5095 3 1590 308 128 0 0 chr6 131856037 131856084 -17660953 + RMER16-int LTR ERVK 141 187 -5219 3 1590 1656 215 73 16 chr6 131856066 131856562 -17660475 + ETnERV2-int LTR ERVK 1586 2109 -5297 3 1590 704 253 5 37 chr6 131856540 131856729 -17660308 + ETnERV2-int LTR ERVK 2426 2608 -4798 3 198 22412 130 27 12 chr6 131856729 131860386 -17656651 + ETnERV2-int LTR ERVK 3055 7741 -476 3 1591 4760 154 8 0 chr6 131860441 131861143 -17655894 + ETnERV2-int LTR ERVK 6494 7201 -205 3 1591 1381 132 17 21 chr6 131861254 131861493 -17655544 + RLTR9E LTR ERVK 1 238 -171 3 1591 1851 223 89 11 chr6 131861491 131861953 -17655084 - RLTR25B LTR ERVK -530 498 1 3 1591 2426 152 72 33 chr6 131862278 131862735 -17654302 - RMER16 LTR ERVK 0 533 59 3 1591 238 217 0 0 chr6 131862845 131862891 -17654146 + PB1D9 SINE Alu 74 119 -1 3 1591 488 311 109 0 chr6 131863557 131863750 -17653287 + ID_B1 SINE B4 2 215 -9 3 1591 827 249 9 30 chr6 131863976 131864292 -17652745 + L1VL4 LINE L1 800 1094 -5888 3 1591 1687 71 0 4 chr6 131864594 131864821 -17652216 - L1Md_A LINE L1 -1 6581 6356 3 1591 396 0 0 0 chr6 131865198 131865242 -17651795 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 3 1591 25 0 0 0 chr6 131865604 131865629 -17651408 + AT_rich Low_complexity Low_complexity 1 25 0 3 1591 3188 219 39 10 chr6 131865629 131866327 -17650710 - Lx3C LINE L1 -11 6965 6248 3 1591 1189 185 37 43 chr6 131866322 131866622 -17650415 - MusHAL1 LINE L1 -332 2380 2083 3 1591 1599 4 0 0 chr6 131867176 131867429 -17649608 + (GAA)n Simple_repeat Simple_repeat 1 253 0 3 1591 2175 300 94 86 chr6 131868979 131870091 -17646946 - RLTR22_Mur LTR ERVK 0 1848 761 3 1591 1006 110 0 46 chr6 131870091 131870108 -17646929 - B1_Mus1 SINE Alu -2 146 136 3 1591 324 0 0 0 chr6 131870108 131870144 -17646893 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 3 1591 1006 110 0 46 chr6 131870144 131870278 -17646759 - B1_Mus1 SINE Alu -13 135 2 3 1591 2175 300 94 86 chr6 131870278 131870658 -17646379 - RLTR22_Mur LTR ERVK -1088 760 345 3 1591 3886 117 22 42 chr6 131870659 131871345 -17645692 + MusHAL1 LINE L1 886 1557 -1155 3 1591 1349 222 111 15 chr6 131871368 131871701 -17645336 - RMER13A LTR ERVK -378 482 118 3 1591 6797 197 69 82 chr6 131871755 131874368 -17642669 - L1_Mur2 LINE L1 -2487 3390 814 3 1591 1324 285 95 31 chr6 131874373 131874825 -17642212 - RMER19C LTR ERVK -5 606 126 3 1591 41123 8 0 1 chr6 131874876 131881866 -17635171 - L1Md_A LINE L1 -1 6581 1 3 1591 1855 204 85 42 chr6 131881867 131882434 -17634603 - MurERV4_19-int LTR ERVK -3 5777 5187 3 1591 3406 163 31 0 chr6 131882496 131883141 -17633896 - MurERV4_19-int LTR ERVK -563 5217 4553 3 1591 2269 161 7 2 chr6 131883140 131883556 -17633481 - MurERV4_19-int LTR ERVK -2251 3529 3112 3 1591 14646 230 44 9 chr6 131883558 131886945 -17630092 + MERVL_2A-int LTR ERVL 764 4269 -1492 3 1591 2850 269 16 10 chr6 131886956 131887662 -17629375 + MERVL_2A-int LTR ERVL 4522 5231 -530 3 1591 22 56 0 0 chr6 131887697 131887733 -17629304 + AT_rich Low_complexity Low_complexity 1 36 0 3 1591 24 0 0 0 chr6 131888367 131888391 -17628646 + AT_rich Low_complexity Low_complexity 1 24 0 3 1591 755 184 0 23 chr6 131888418 131888590 -17628447 + L1_Mus4 LINE L1 6467 6634 -2 3 1591 551 131 9 9 chr6 131888611 131888719 -17628318 + L1_Mur1 LINE L1 1107 1214 -5770 3 1591 6532 181 33 7 chr6 131888721 131889947 -17627090 + Lx2 LINE L1 5684 6941 -56 4 1591 1119 152 14 5 chr6 131889949 131890161 -17626876 + L1_Mur1 LINE L1 4313 4526 -1360 3 1591 363 23 0 0 chr6 131890165 131890209 -17626828 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1591 185 128 21 0 chr6 131890324 131890371 -17626666 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1591 2720 70 3 0 chr6 131890391 131890749 -17626288 - L1_Mus1 LINE L1 -1 6566 6208 4 1591 197 0 71 0 chr6 131893405 131893433 -17623604 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1591 22 0 0 0 chr6 131893717 131893739 -17623298 + AT_rich Low_complexity Low_complexity 1 22 0 4 1591 3455 83 146 6 chr6 131894153 131894675 -17622362 + L1_Mus2 LINE L1 5972 6566 0 4 1591 42 57 0 0 chr6 131894761 131894831 -17622206 + AT_rich Low_complexity Low_complexity 1 70 0 4 1591 7423 162 27 6 chr6 131894866 131896272 -17620765 + L1_Mur1 LINE L1 1734 3169 -2717 4 1591 583 257 46 59 chr6 131896273 131896492 -17620545 + L1VL1 LINE L1 655 827 -5789 4 1591 12115 189 49 60 chr6 131896498 131900282 -17616755 + L1VL1 LINE L1 1071 4763 -1120 4 1591 628 305 108 29 chr6 131900311 131900692 -17616345 - L1_Rod LINE L1 -781 5066 4656 4 1591 1765 167 75 81 chr6 131900933 131901389 -17615648 + RLTR11B LTR ERVK 1 453 0 4 1591 894 124 0 0 chr6 131901587 131901740 -17615297 + (CTATT)n Simple_repeat Simple_repeat 3 155 0 4 1591 441 0 0 0 chr6 131902451 131902500 -17614537 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1591 248 310 116 32 chr6 131903534 131903556 -17613481 + Lx8 LINE L1 6167 6188 -1508 4 1591 180 0 0 0 chr6 131903556 131903576 -17613461 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1591 396 269 56 27 chr6 131903576 131903743 -17613294 + Lx8 LINE L1 6189 6372 -1324 4 1591 306 286 71 0 chr6 131903934 131904116 -17612921 + L1M2 LINE L1 3067 3261 -2882 4 1591 1159 6 0 82 chr6 131904245 131904441 -17612596 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 4 1591 315 32 143 0 chr6 131904441 131904504 -17612533 + GA-rich Low_complexity Low_complexity 4 75 0 4 1591 1310 17 0 43 chr6 131904504 131904689 -17612348 + (GGGAA)n Simple_repeat Simple_repeat 4 180 0 4 1591 408 319 28 28 chr6 131904904 131905049 -17611988 - B1_Mur1 SINE Alu 0 149 5 4 1591 229 291 39 93 chr6 131905333 131905462 -17611575 + B1_Mus1 SINE Alu 14 135 -13 4 1591 752 50 10 0 chr6 131905462 131905563 -17611474 + (GAAA)n Simple_repeat Simple_repeat 4 105 0 4 1591 5142 175 20 30 chr6 131905624 131906656 -17610381 - RMER12B LTR ERVK -355 1049 28 4 1591 195 42 0 0 chr6 131907717 131907741 -17609296 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1591 1895 211 46 28 chr6 131907858 131908559 -17608478 + L1_Mur3 LINE L1 1077 1785 -4095 4 1591 286 341 143 0 chr6 131908690 131908816 -17608221 - B1F SINE Alu 0 149 6 4 1591 753 12 0 0 chr6 131908976 131909062 -17607975 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 4 1591 270 0 0 0 chr6 131909068 131909098 -17607939 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1591 1035 102 0 0 chr6 131909098 131909235 -17607802 - B1_Mm SINE Alu -9 138 2 4 1591 459 0 0 0 chr6 131909244 131909295 -17607742 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1591 438 101 0 0 chr6 131909429 131909498 -17607539 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1591 396 0 0 0 chr6 131909499 131909543 -17607494 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1591 327 227 33 33 chr6 131909583 131909674 -17607363 - B3 SINE B2 -102 114 24 4 1591 264 164 0 0 chr6 131909753 131909820 -17607217 + T-rich Low_complexity Low_complexity 1 67 0 4 1591 7744 73 9 2 chr6 131910202 131911264 -17605773 - L1Md_F2 LINE L1 -649 5933 4862 4 1591 378 203 0 0 chr6 131911265 131911339 -17605698 - L1Md_F LINE L1 -6040 479 406 4 1591 10319 103 7 22 chr6 131911378 131913734 -17603303 + L1Md_F3 LINE L1 303 2622 -3261 4 1591 397 0 0 0 chr6 131913740 131913787 -17603250 - RLTRETN_Mm LTR ERVK 0 322 276 4 1591 20529 23 0 8 chr6 131913788 131916223 -17600814 - MMETn-int LTR ERVK -2427 2417 1 4 1591 2776 19 0 0 chr6 131916223 131916545 -17600492 - RLTRETN_Mm LTR ERVK 0 322 1 4 1591 22139 70 3 2 chr6 131916548 131919507 -17597530 + L1Md_F3 LINE L1 2626 5587 -296 4 1591 7333 54 39 0 chr6 131919508 131920448 -17596589 + L1Md_F3 LINE L1 5589 6565 -19 4 1591 4369 151 29 17 chr6 131920458 131921280 -17595757 + L1_Mur1 LINE L1 4667 5498 -388 4 1591 462 254 88 34 chr6 131921430 131921634 -17595403 - RLTR15 LTR ERVK -9 350 136 4 1591 927 57 0 0 chr6 131921652 131921774 -17595263 + (TC)n Simple_repeat Simple_repeat 1 122 0 4 1591 2285 78 47 29 chr6 131921823 131922165 -17594872 + L1Md_F2 LINE L1 6224 6571 -11 4 1591 23724 92 7 20 chr6 131922176 131923654 -17593383 + L1Md_F LINE L1 503 1961 -3922 4 1591 201 39 0 0 chr6 131923654 131923680 -17593357 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 1591 23724 85 7 6 chr6 131923680 131926319 -17590718 + L1Md_F LINE L1 1962 4601 -1282 4 1591 3915 42 4 0 chr6 131926319 131926966 -17590071 - L1Md_F2 LINE L1 -526 6056 5408 4 1591 11389 71 0 1 chr6 131926961 131928463 -17588574 + L1Md_F2 LINE L1 3910 5410 -473 4 1591 7269 139 11 91 chr6 131928717 131928901 -17588136 + L1_Mus2 LINE L1 4542 4734 -1149 4 1591 252 0 0 0 chr6 131928901 131928929 -17588108 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 4 1591 7269 139 11 91 chr6 131928929 131929423 -17587614 + L1_Mus2 LINE L1 4735 5216 -667 4 1591 1980 139 121 16 chr6 131929423 131929853 -17587184 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1591 7269 112 22 31 chr6 131929853 131931290 -17585747 + L1_Mus2 LINE L1 5217 6564 -2 4 1591 4373 235 45 33 chr6 131931303 131932493 -17584544 + Lx2B LINE L1 5778 6989 -11 4 1591 808 330 65 31 chr6 131935503 131936084 -17580953 - Lx9 LINE L1 -178 7466 6866 4 1591 700 353 48 44 chr6 131936066 131936502 -17580535 - Lx9 LINE L1 -956 6688 6251 4 1591 250 226 0 31 chr6 131936506 131936570 -17580467 + L1_Rod LINE L1 5007 5068 -779 4 1591 271 250 0 30 chr6 131936907 131936973 -17580064 + GA-rich Low_complexity Low_complexity 2 65 0 4 1591 243 173 0 0 chr6 131937865 131937917 -17579120 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1591 474 18 0 0 chr6 131938483 131938538 -17578499 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1591 1265 228 45 7 chr6 131938786 131939077 -17577960 + RMER12 LTR ERVK 7 308 -1014 4 1591 1644 190 30 14 chr6 131939167 131939527 -17577510 + RMER12 LTR ERVK 447 782 -540 4 1591 480 18 0 0 chr6 131939529 131939586 -17577451 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1591 516 213 21 26 chr6 131939919 131940057 -17576980 + B1_Mur3 SINE Alu 9 148 -1 4 1591 239 286 0 25 chr6 131942381 131942460 -17574577 + Lx8 LINE L1 7397 7473 0 4 1591 22 0 0 0 chr6 131944437 131944459 -17572578 + AT_rich Low_complexity Low_complexity 1 22 0 4 1591 198 179 0 0 chr6 131944720 131944759 -17572278 - L3 LINE CR1 -900 3589 3551 4 1591 1984 218 2 23 chr6 131944819 131945214 -17571823 - RLTR21 LTR ERVK -1181 391 5 4 1591 945 148 17 11 chr6 131946354 131946532 -17570505 - L1_Mur2 LINE L1 -3196 2681 2503 4 1591 573 262 60 13 chr6 131946912 131947144 -17569893 - ORR1B1-int LTR MaLR -1002 961 719 4 1591 567 217 60 80 chr6 131947100 131947250 -17569787 - MT2B LTR ERVL -303 298 152 4 1591 923 230 43 19 chr6 131947368 131947625 -17569412 - ORR1B1-int LTR MaLR -1310 653 391 4 1591 4664 108 115 1 chr6 131947644 131948394 -17568643 - L1_Mus3 LINE L1 -7 6631 5797 4 1591 681 92 0 245 chr6 131948394 131948528 -17568509 + MusHAL1 LINE L1 1171 1259 -1453 4 1591 291 28 0 0 chr6 131948528 131948564 -17568473 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1591 681 92 0 245 chr6 131948564 131948617 -17568420 + MusHAL1 LINE L1 1260 1312 -1400 4 1591 1629 232 83 3 chr6 131948617 131948989 -17568048 - ORR1B1-int LTR MaLR -1560 403 2 4 1591 492 169 0 0 chr6 131948990 131949073 -17567964 - ORR1B1 LTR MaLR 0 394 312 4 1591 1852 184 11 0 chr6 131949073 131949421 -17567616 + RMER12 LTR ERVK 1 352 -970 4 1591 534 134 0 0 chr6 131949421 131949503 -17567534 + L1VL2 LINE L1 357 438 -5897 4 1591 508 71 46 23 chr6 131949507 131949594 -17567443 - MusHAL1 LINE L1 -1345 1367 1279 4 1591 346 311 55 64 chr6 131949845 131950065 -17566972 - Lx8 LINE L1 -949 6524 6307 4 1591 567 125 9 26 chr6 131950264 131950379 -17566658 + T-rich Low_complexity Low_complexity 3 115 0 4 1591 609 244 61 104 chr6 131950771 131951050 -17565987 + RLTR9A LTR ERVK 102 368 0 4 1591 446 284 133 27 chr6 131951137 131951430 -17565607 + RLTR41 LTR ERV1 170 499 -33 4 1591 245 253 0 0 chr6 131951626 131951701 -17565336 + T-rich Low_complexity Low_complexity 1 75 0 4 1591 1802 174 66 23 chr6 131951701 131952094 -17564943 - Lx LINE L1 0 6654 6245 4 1591 447 68 0 0 chr6 131952890 131952949 -17564088 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1591 269 48 48 0 chr6 131952973 131953015 -17564022 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1591 376 35 17 17 chr6 131954253 131954312 -17562725 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 4 1591 306 0 0 0 chr6 131954313 131954347 -17562690 + (GAA)n Simple_repeat Simple_repeat 2 35 0 4 1591 24 0 0 0 chr6 131955636 131955660 -17561377 + AT_rich Low_complexity Low_complexity 1 24 0 4 1591 550 254 40 40 chr6 131955668 131955816 -17561221 - B1_Mur3 SINE Alu 0 149 2 4 1591 375 244 34 34 chr6 131956879 131956998 -17560039 + B3 SINE B2 3 121 -95 4 1591 378 0 0 0 chr6 131957033 131957075 -17559962 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1591 491 0 17 0 chr6 131957075 131957133 -17559904 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 1591 353 334 42 9 chr6 131957448 131957571 -17559466 + B1F SINE Alu 6 128 -21 4 1591 331 297 49 42 chr6 131957574 131957718 -17559319 + L1M4 LINE L1 3741 3885 -2261 4 1591 2031 201 63 22 chr6 131957718 131958408 -17558629 - L1_Mur3 LINE L1 -4086 1794 1077 4 1591 462 18 0 0 chr6 131958521 131958576 -17558461 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1591 5227 177 21 30 chr6 131959604 131960643 -17556394 + RMER12B LTR ERVK 20 1049 -355 4 1591 432 0 0 0 chr6 131960695 131960743 -17556294 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 4 1591 381 283 39 8 chr6 131960743 131960871 -17556166 - B1_Mur3 SINE Alu -13 136 5 4 1591 303 336 21 14 chr6 131961147 131961292 -17555745 + B1_Mur1 SINE Alu 4 149 0 4 1591 378 0 0 0 chr6 131961495 131961537 -17555500 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1591 314 350 50 28 chr6 131961649 131961703 -17555334 - L1M2 LINE L1 -2839 3304 3252 4 1591 183 42 0 0 chr6 131961703 131961727 -17555310 + (TTG)n Simple_repeat Simple_repeat 1 24 0 4 1591 314 350 50 28 chr6 131961727 131961954 -17555083 - L1M2 LINE L1 -2892 3251 3017 4 1591 483 18 0 0 chr6 131962243 131962299 -17554738 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1591 525 32 0 0 chr6 131963315 131963378 -17553659 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1591 2124 190 23 68 chr6 131964336 131964810 -17552227 - RLTR11B LTR ERVK 0 453 1 5 1591 1079 329 50 31 chr6 131965064 131965691 -17551346 + L1_Rod LINE L1 4658 5300 -547 5 1591 1085 124 0 11 chr6 131965691 131965871 -17551166 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 1591 1079 329 50 31 chr6 131965871 131965896 -17551141 + L1_Rod LINE L1 5301 5323 -524 5 1591 10567 150 42 36 chr6 131965960 131969164 -17547873 - Lx3B LINE L1 -3 6970 3782 5 1591 3149 119 10 0 chr6 131969162 131969657 -17547380 - Lx3B LINE L1 -3144 2742 2243 5 1591 2985 51 0 0 chr6 131969659 131970013 -17547024 + IAPEY2_LTR LTR ERVK 1 354 -3 5 1591 9231 131 11 23 chr6 131970017 131971652 -17545385 + IAPEY3-int LTR ERVK 21 1982 -5698 5 1591 3441 83 9 0 chr6 131971629 131972077 -17544960 + IAPEY3-int LTR ERVK 2238 2689 -4991 5 1591 476 51 0 0 chr6 131972070 131972129 -17544908 + IAPEY3-int LTR ERVK 4852 4910 -2770 5 1591 3241 84 57 0 chr6 131972129 131972861 -17544176 + IAPEY3-int LTR ERVK 6907 7680 0 5 1591 2947 53 3 0 chr6 131972861 131973217 -17543820 + IAPEY2_LTR LTR ERVK 1 357 0 5 1591 2495 172 10 19 chr6 131973217 131973726 -17543311 - Lx3B LINE L1 -3640 2246 1741 5 1591 414 0 0 0 chr6 131973726 131973772 -17543265 + (TTATA)n Simple_repeat Simple_repeat 5 50 0 5 1591 67 25 0 0 chr6 131973782 131973863 -17543174 + AT_rich Low_complexity Low_complexity 1 81 0 5 1591 1196 269 68 36 chr6 131973863 131974275 -17542762 + L1_Rod LINE L1 5329 5753 -94 5 1591 237 65 0 0 chr6 131975013 131975044 -17541993 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1591 1082 96 0 14 chr6 131977433 131977581 -17539456 + B1_Mus2 SINE Alu 2 147 0 5 1591 603 62 0 0 chr6 131977899 131977979 -17539058 + (TC)n Simple_repeat Simple_repeat 2 81 0 5 1591 1126 182 0 5 chr6 131978097 131978312 -17538725 - L1_Mur1 LINE L1 -1360 4526 4313 5 1591 7056 162 20 7 chr6 131978314 131979549 -17537488 - Lx2 LINE L1 -56 6941 5691 5 1591 239 73 0 24 chr6 131979557 131979599 -17537438 - L1_Mur1 LINE L1 -5770 1212 1172 5 1591 12259 121 36 7 chr6 131979603 131982347 -17534690 + L1_Mus1 LINE L1 3742 6565 -2 5 1591 585 244 7 7 chr6 131982361 131982497 -17534540 + RMER19C LTR ERVK 471 606 -5 5 1591 8315 188 122 33 chr6 131982505 131983481 -17533556 + L1_Mur2 LINE L1 817 1879 -3998 5 1591 528 16 0 0 chr6 131983481 131983542 -17533495 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1591 8315 186 48 46 chr6 131983542 131985050 -17531987 + L1_Mur2 LINE L1 1880 3389 -2488 5 1591 1358 248 110 24 chr6 131985097 131985469 -17531568 + RMER13A LTR ERVK 107 510 -350 5 1591 4157 117 26 0 chr6 131985476 131986135 -17530902 - MusHAL1 LINE L1 -1151 1561 886 5 1591 943 203 128 11 chr6 131986136 131986410 -17530627 + RLTR22_Mur LTR ERVK 345 650 -1198 5 1591 1980 208 56 23 chr6 131986652 131987046 -17529991 - RLTR31B_Mm LTR ERVK 0 557 151 5 1591 2141 257 40 14 chr6 131987042 131987615 -17529422 + RLTR22_Mur LTR ERVK 1222 1809 -39 5 1591 361 73 59 0 chr6 131988504 131988572 -17528465 + (TAAAA)n Simple_repeat Simple_repeat 2 73 0 5 1591 729 254 75 36 chr6 131988664 131988917 -17528120 + RMER12 LTR ERVK 1022 1284 -38 5 1591 1255 290 27 23 chr6 131988947 131989459 -17527578 + L1_Rod LINE L1 5232 5745 -102 5 1592 1247 198 24 30 chr6 131991315 131991612 -17525425 + MusHAL1 LINE L1 2083 2377 -335 5 1592 2061 213 42 0 chr6 131991610 131992038 -17524999 + Lx3C LINE L1 6248 6693 -283 5 1592 29 78 0 0 chr6 131992236 131992300 -17524737 + AT_rich Low_complexity Low_complexity 1 64 0 5 1592 5415 58 7 1 chr6 131993200 131993886 -17523151 - L1Md_F2 LINE L1 0 6582 5893 5 1592 240 170 0 0 chr6 131994171 131994218 -17522819 - L1_Mur1 LINE L1 -5888 1094 1048 5 1592 2840 44 3 0 chr6 131994222 131994562 -17522475 - IAPLTR4 LTR ERVK -4 341 1 5 1592 6206 198 6 10 chr6 131994562 131995720 -17521317 - IAPLTR3-int LTR ERVK -20 6801 5750 5 1592 685 277 56 37 chr6 131995956 131996278 -17520759 - IAPLTR3-int LTR ERVK -797 5745 5418 5 1592 1324 112 14 14 chr6 131996448 131996666 -17520371 + L1Md_F2 LINE L1 6363 6580 -2 5 1592 216 0 0 0 chr6 131996838 131996862 -17520175 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1592 421 173 106 0 chr6 131997215 131997319 -17519718 + URR1B DNA MER1_type 66 180 -45 5 1592 372 156 26 0 chr6 131997312 131997389 -17519648 + URR1B DNA MER1_type 128 206 -19 5 1592 1022 104 21 0 chr6 131997897 131998041 -17518996 + B1_Mus2 SINE Alu 1 147 0 5 1592 238 98 31 47 chr6 131998047 131998111 -17518926 + A-rich Low_complexity Low_complexity 2 64 0 5 1592 244 324 31 52 chr6 131998204 131998351 -17518686 - MTD LTR MaLR -278 143 3 5 1592 2547 109 0 30 chr6 131998366 131998763 -17518274 + L1Md_F2 LINE L1 6196 6580 -2 5 1592 531 165 0 0 chr6 131999273 131999358 -17517679 - BC1_Mm scRNA scRNA -66 86 2 5 1592 230 302 57 0 chr6 131999319 131999372 -17517665 - ZP3AR Satellite Satellite -130 82 27 5 1592 234 196 22 0 chr6 132000272 132000318 -17516719 + CT-rich Low_complexity Low_complexity 4 50 0 1 1592 306 138 0 0 chr6 132000320 132000378 -17516659 + (TCTG)n Simple_repeat Simple_repeat 4 61 0 2 1592 506 294 97 5 chr6 132000507 132000692 -17516345 + B3 SINE B2 9 210 -6 3 1592 242 211 18 0 chr6 132000782 132000839 -17516198 + MTEb LTR MaLR 322 379 0 4 1592 825 176 0 26 chr6 132000889 132001041 -17515996 + B1_Mus1 SINE Alu 1 148 0 5 1592 188 24 47 47 chr6 132001041 132001084 -17515953 + (CAAAAA)n Simple_repeat Simple_repeat 4 46 0 6 1592 225 159 0 0 chr6 132001101 132001145 -17515892 + A-rich Low_complexity Low_complexity 1 44 0 7 1592 652 263 23 6 chr6 132001273 132001445 -17515592 - Lx4B LINE L1 -111 6947 6773 8 1592 1218 205 43 60 chr6 132001583 132001998 -17515039 + RMER17C LTR ERVK 1 408 -2 9 1592 396 88 0 0 chr6 132002092 132002149 -17514888 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1592 2412 318 81 31 chr6 132002346 132003595 -17513442 + RMER1A Other Other 6 1017 -13 1 1592 1411 268 51 22 chr6 132003604 132004013 -17513024 + RLTR22_Mus LTR ERVK 1133 1553 -255 1 1592 423 272 105 53 chr6 132004009 132004180 -17512857 + RMER12 LTR ERVK 1081 1260 -62 1 1592 22 56 0 0 chr6 132004393 132004429 -17512608 + AT_rich Low_complexity Low_complexity 1 36 0 1 1592 225 132 0 0 chr6 132005114 132005152 -17511885 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1 1592 204 227 0 0 chr6 132006319 132006363 -17510674 + (CAT)n Simple_repeat Simple_repeat 1 44 0 1 1592 247 393 99 7 chr6 132007660 132007801 -17509236 + RSINE1 SINE B4 10 163 -2 1 1592 22 35 0 0 chr6 132007846 132007875 -17509162 + AT_rich Low_complexity Low_complexity 1 29 0 1 1592 1185 85 17 0 chr6 132008588 132008764 -17508273 - L1_Mus1 LINE L1 -205 6362 6184 1 1592 1090 164 0 5 chr6 132008766 132008956 -17508081 + L1_Mus1 LINE L1 6379 6567 0 1 1592 24 67 0 0 chr6 132009470 132009515 -17507522 + AT_rich Low_complexity Low_complexity 1 45 0 2 1592 282 176 0 34 chr6 132009936 132010024 -17507013 + CT-rich Low_complexity Low_complexity 4 88 0 2 1592 1217 85 6 0 chr6 132010025 132010201 -17506836 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 2 1592 307 317 41 27 chr6 132010241 132010387 -17506650 + B1_Mur3 SINE Alu 1 148 -1 2 1592 378 0 0 0 chr6 132010776 132010818 -17506219 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1592 22 0 0 0 chr6 132011197 132011219 -17505818 + AT_rich Low_complexity Low_complexity 1 22 0 2 1592 1373 277 103 27 chr6 132011997 132012549 -17504488 + Lx7 LINE L1 6747 7340 -356 2 1592 451 312 55 35 chr6 132012807 132013006 -17504031 + B4 SINE B4 3 205 -87 2 1592 1385 232 41 13 chr6 132013126 132013444 -17503593 + ORR1A4 LTR MaLR 1 327 -2 2 1592 461 286 62 153 chr6 132013982 132014266 -17502771 + RLTR18B LTR ERVK 140 539 -77 2 1592 3928 171 40 7 chr6 132015217 132015924 -17501113 - Lx2 LINE L1 -173 6824 6095 3 1592 798 309 65 40 chr6 132016360 132016681 -17500356 - Lx2B LINE L1 -22 6978 6650 3 1592 295 58 77 0 chr6 132016963 132017015 -17500022 + (TTTTG)n Simple_repeat Simple_repeat 4 59 0 3 1592 654 49 0 0 chr6 132017015 132017097 -17499940 + (TTCTC)n Simple_repeat Simple_repeat 4 85 0 3 1592 770 244 43 10 chr6 132017206 132017413 -17499624 - Lx3B LINE L1 -3 6970 6757 3 1592 969 150 0 0 chr6 132017411 132017558 -17499479 - Lx3B LINE L1 -340 6633 6487 3 1592 773 164 0 28 chr6 132017559 132017703 -17499334 - L1_Mur1 LINE L1 -440 5446 5307 3 1592 1253 214 62 65 chr6 132017704 132018088 -17498949 + L1_Mur1 LINE L1 4981 5363 -523 3 1592 965 263 47 93 chr6 132019803 132020189 -17496848 + RLTR9A LTR ERVK 1 368 0 3 1592 230 95 24 0 chr6 132020523 132020565 -17496472 + (AATAG)n Simple_repeat Simple_repeat 3 45 0 3 1592 384 22 0 0 chr6 132020608 132020653 -17496384 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1592 2976 187 55 82 chr6 132020654 132021541 -17495496 + ETnERV2-int LTR ERVK 1078 1940 -5466 3 1592 314 351 20 33 chr6 132021635 132021788 -17495249 + B3 SINE B2 1 151 -65 4 1592 36924 52 1 4 chr6 132022243 132028514 -17488523 - L1Md_T LINE L1 0 6585 238 4 1592 6134 124 19 4 chr6 132028539 132029152 -17487885 - L1_Mus2 LINE L1 -9 6557 5941 4 1592 279 0 0 0 chr6 132029152 132029183 -17487854 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1592 14127 208 40 13 chr6 132029183 132030434 -17486603 - L1_Mus2 LINE L1 -626 5940 4673 4 1592 288 0 0 0 chr6 132030434 132030466 -17486571 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1592 14127 240 47 16 chr6 132030466 132031588 -17485449 - L1_Mus2 LINE L1 -1205 4672 3472 4 1592 312 111 0 0 chr6 132031588 132031642 -17485395 + (ATTTG)n Simple_repeat Simple_repeat 1 54 0 4 1592 14127 240 47 16 chr6 132031642 132033362 -17483675 - L1_Mus2 LINE L1 -2406 3471 1715 4 1592 391 344 19 49 chr6 132033365 132033527 -17483510 - RLTR31_Mur LTR ERVK -6 547 391 4 1592 500 329 51 45 chr6 132033547 132033884 -17483153 - RLTR17 LTR ERVK -272 420 33 4 1592 2125 206 24 2 chr6 132033900 132034406 -17482631 - MusHAL1 LINE L1 -2195 1158 642 4 1592 299 44 22 0 chr6 132034406 132034451 -17482586 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 4 1592 572 219 65 5 chr6 132034451 132034495 -17482542 - MusHAL1 LINE L1 -2712 642 590 4 1592 2357 174 19 19 chr6 132034495 132034975 -17482062 + L1_Mus3 LINE L1 6144 6623 -15 5 1592 969 120 0 0 chr6 132034975 132035108 -17481929 + B1_Mus2 SINE Alu 2 134 -13 5 1592 585 76 0 0 chr6 132035109 132035188 -17481849 + (GAAA)n Simple_repeat Simple_repeat 1 79 0 5 1592 460 365 35 17 chr6 132035202 132035489 -17481548 - Lx6 LINE L1 -1232 6228 5937 5 1592 255 175 0 0 chr6 132035582 132035639 -17481398 + GA-rich Low_complexity Low_complexity 3 59 0 5 1592 21 57 0 0 chr6 132035828 132035863 -17481174 + AT_rich Low_complexity Low_complexity 1 35 0 5 1592 210 118 0 0 chr6 132036089 132036123 -17480914 + (CTG)n Simple_repeat Simple_repeat 2 35 0 5 1592 247 291 0 0 chr6 132036130 132036185 -17480852 - B1_Mur1 SINE Alu -9 140 86 5 1592 346 297 14 0 chr6 132038624 132038698 -17478339 - RSINE1 SINE B4 -30 135 61 5 1592 1003 311 64 5 chr6 132039674 132040078 -17476959 + Lx7 LINE L1 6888 7315 -381 5 1592 5828 121 11 2 chr6 132040079 132040977 -17476060 + L1_Mus1 LINE L1 5660 6565 -2 6 1592 771 11 0 0 chr6 132041218 132041306 -17475731 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 1592 246 351 52 71 chr6 132041344 132041611 -17475426 + RLTR18 LTR ERVK 21 282 -334 6 1592 463 294 70 54 chr6 132041676 132041917 -17475120 + RLTR18B LTR ERVK 185 429 -83 6 1592 2866 221 11 33 chr6 132041955 132042705 -17474332 + L1_Mur2 LINE L1 1975 2707 -3170 6 1592 723 237 26 0 chr6 132043063 132043257 -17473780 - RLTR22_Mur LTR ERVK -1488 360 162 6 1592 1470 210 22 39 chr6 132043259 132043616 -17473421 - Lx2 LINE L1 0 6997 6647 6 1592 504 291 81 88 chr6 132043627 132044072 -17472965 + RMER3D-int LTR ERVK 500 941 -1385 6 1592 230 287 111 33 chr6 132044074 132044164 -17472873 + RMER4A LTR ERVK 334 430 -36 6 1592 2471 235 60 45 chr6 132044164 132045376 -17471661 + RMER3D-int LTR ERVK 1037 2837 -5 6 1592 1789 193 0 28 chr6 132045383 132045746 -17471291 + BGLII_B LTR ERVK 11 363 -78 6 1592 378 171 108 12 chr6 132046282 132046365 -17470672 + BGLII_B LTR ERVK 349 439 -2 6 1592 233 325 52 0 chr6 132046404 132046481 -17470556 - B1F1 SINE Alu -40 109 29 6 1592 405 70 0 0 chr6 132047364 132047421 -17469616 + (GTTTG)n Simple_repeat Simple_repeat 3 59 0 7 1592 1094 262 21 68 chr6 132048771 132049111 -17467926 - ORR1A4 LTR MaLR -5 324 1 7 1592 928 199 7 1 chr6 132049111 132049326 -17467711 - ORR1A4-int LTR MaLR 0 1963 1781 7 1592 1590 218 25 13 chr6 132049332 132049880 -17467157 - ORR1A3-int LTR MaLR -191 1772 1001 7 1592 234 91 0 0 chr6 132049899 132049932 -17467105 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1592 183 100 0 0 chr6 132050191 132050221 -17466816 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1592 18002 116 12 7 chr6 132051076 132054665 -17462372 + L1Md_F LINE L1 423 4030 -1853 7 1592 2103 123 3 0 chr6 132054663 132054981 -17462056 + L1Md_F LINE L1 4759 5077 -806 7 1592 2261 112 0 25 chr6 132054981 132055337 -17461700 + L1Md_F2 LINE L1 6232 6578 -4 7 1592 505 184 22 205 chr6 132055874 132056059 -17460978 + URR1B DNA MER1_type 66 216 -9 7 1592 958 121 14 0 chr6 132056557 132056698 -17460339 + B1_Mus2 SINE Alu 1 143 -4 7 1592 486 46 11 54 chr6 132056702 132056794 -17460243 + (CAAAAA)n Simple_repeat Simple_repeat 2 89 0 7 1592 521 131 0 0 chr6 132057495 132057579 -17459458 - BC1_Mm scRNA scRNA -68 84 1 8 1592 214 182 23 0 chr6 132058501 132058545 -17458492 + CT-rich Low_complexity Low_complexity 6 50 0 8 1592 285 118 0 0 chr6 132058546 132058597 -17458440 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 8 1592 5418 91 1 0 chr6 132058597 132059342 -17457695 - L1_Mm LINE L1 -658 5225 4480 8 1592 1810 82 0 4 chr6 132059342 132059587 -17457450 + L1Md_F2 LINE L1 6323 6566 -16 8 1592 25 0 0 0 chr6 132059587 132059612 -17457425 + AT_rich Low_complexity Low_complexity 1 25 0 8 1592 425 314 97 25 chr6 132059721 132059917 -17457120 + B3 SINE B2 1 210 -6 8 1592 898 163 0 0 chr6 132060110 132060257 -17456780 + B1_Mus1 SINE Alu 1 147 -1 8 1592 296 145 39 13 chr6 132060257 132060334 -17456703 + (CAAA)n Simple_repeat Simple_repeat 1 79 0 8 1592 258 179 0 0 chr6 132060341 132060397 -17456640 + A-rich Low_complexity Low_complexity 1 56 0 8 1592 228 265 58 14 chr6 132060537 132060606 -17456431 + MLT1H-int LTR MaLR 568 639 -770 9 1592 366 282 0 0 chr6 132060612 132060697 -17456340 - Lx4B LINE L1 -201 6857 6773 9 1592 677 215 187 63 chr6 132060832 132061195 -17455842 + RMER17C LTR ERVK 1 408 -2 9 1592 459 0 0 0 chr6 132061291 132061342 -17455695 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1592 2168 320 77 41 chr6 132061540 132062781 -17454256 + RMER1A Other Other 6 1005 -25 9 1592 1403 271 51 51 chr6 132062803 132063377 -17453660 + RLTR22_Mur LTR ERVK 1072 1610 -238 9 1592 189 329 100 12 chr6 132066365 132066445 -17450592 - L4 LINE RTE -1875 154 68 9 1592 986 136 17 0 chr6 132067875 132068051 -17448986 - L1_Mus1 LINE L1 -205 6362 6184 9 1592 865 202 5 16 chr6 132068053 132068244 -17448793 + L1_Mus1 LINE L1 6379 6567 0 9 1592 855 144 0 22 chr6 132069239 132069423 -17447614 + CT-rich Low_complexity Low_complexity 1 180 0 9 1592 363 269 48 41 chr6 132069478 132069625 -17447412 + B1_Mur3 SINE Alu 1 148 -1 9 1592 254 298 8 8 chr6 132070958 132071090 -17445947 - L1P5 LINE L1 -692 5464 5333 1 1592 1612 278 93 18 chr6 132071242 132071799 -17445238 + Lx7 LINE L1 6742 7340 -356 1 1592 219 233 75 88 chr6 132072055 132072135 -17444902 + ID4_ SINE ID 3 81 -2 1 1592 318 297 89 79 chr6 132072066 132072256 -17444781 + B4 SINE B4 14 205 -87 1 1592 1127 272 34 28 chr6 132072374 132072699 -17444338 + ORR1A4 LTR MaLR 1 327 -2 1 1592 551 335 62 91 chr6 132073244 132073582 -17443455 + RLTR18B LTR ERVK 3 338 -278 1 1592 2158 153 5 39 chr6 132073582 132073990 -17443047 + L1Md_F2 LINE L1 6185 6578 -4 1 1592 551 299 75 66 chr6 132073990 132074219 -17442818 + RLTR18B LTR ERVK 205 547 -69 1 1592 21 0 0 0 chr6 132074959 132074980 -17442057 + AT_rich Low_complexity Low_complexity 1 21 0 1 1592 2466 197 62 46 chr6 132075370 132076003 -17441034 - RMER6A LTR ERVK 0 756 114 1 1592 346 369 71 32 chr6 132076738 132076990 -17440047 - B4 SINE B4 -28 264 3 1 1592 21 36 0 0 chr6 132077096 132077124 -17439913 + AT_rich Low_complexity Low_complexity 1 28 0 1 1592 226 50 0 48 chr6 132077473 132077515 -17439522 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1592 951 145 0 0 chr6 132077517 132077662 -17439375 - B1_Mus1 SINE Alu -2 146 2 1 1592 651 225 18 53 chr6 132077744 132077913 -17439124 - RLTR28B LTR ERVL -235 246 84 1 1592 248 98 47 47 chr6 132077947 132078011 -17439026 - Lx3C LINE L1 -54 6922 6859 1 1592 4394 181 52 2 chr6 132078270 132079079 -17437958 - Lx2 LINE L1 -54 6943 6095 1 1592 796 289 84 42 chr6 132079525 132079836 -17437201 - Lx2B LINE L1 -27 6973 6650 1 1592 220 91 0 43 chr6 132080117 132080163 -17436874 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 1 1592 21 36 0 0 chr6 132080223 132080251 -17436786 + AT_rich Low_complexity Low_complexity 1 28 0 1 1592 932 225 15 36 chr6 132080252 132080609 -17436428 - Lx3B LINE L1 -3 6970 6485 1 1592 878 142 14 0 chr6 132080606 132080747 -17436290 - L1_Mur1 LINE L1 -438 5448 5306 1 1592 1581 165 39 108 chr6 132080747 132081162 -17435875 + L1_Mur1 LINE L1 4981 5366 -520 1 1592 252 328 124 30 chr6 132081941 132082142 -17434895 - MLT1B LTR MaLR -4 386 167 1 1592 385 370 29 6 chr6 132082307 132082481 -17434556 + RLTR18B LTR ERVK 9 186 -326 1 1592 463 317 71 43 chr6 132082570 132082850 -17434187 + RLTR18B LTR ERVK 140 427 -85 1 1592 2398 196 54 49 chr6 132083603 132084231 -17432806 - RMER6A LTR ERVK -12 744 114 1 1592 1844 190 14 19 chr6 132086594 132086953 -17430084 - Lx2 LINE L1 -51 6946 6590 1 1592 640 289 51 79 chr6 132087278 132087634 -17429403 - Lx3C LINE L1 -26 6950 6292 1 1592 198 0 0 0 chr6 132087915 132087937 -17429100 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1 1592 648 248 53 29 chr6 132088034 132088242 -17428795 - Lx3B LINE L1 -4 6969 6757 1 1592 834 195 0 0 chr6 132088240 132088389 -17428648 - Lx3B LINE L1 -340 6633 6485 1 1592 780 131 35 35 chr6 132088386 132088529 -17428508 - L1_Mur1 LINE L1 -438 5448 5306 1 1592 1427 198 57 55 chr6 132088530 132088914 -17428123 + L1_Mur1 LINE L1 4982 5366 -520 1 1592 768 276 41 93 chr6 132090638 132091026 -17426011 + RLTR9A LTR ERVK 1 368 0 1 1592 716 33 11 0 chr6 132091356 132091447 -17425590 + (AATAG)n Simple_repeat Simple_repeat 4 95 0 1 1592 732 33 0 0 chr6 132091482 132091573 -17425464 + (GA)n Simple_repeat Simple_repeat 1 91 0 1 1592 305 284 0 24 chr6 132091578 132091661 -17425376 + ETnERV2-int LTR ERVK 355 435 -4971 1 1592 2419 204 60 65 chr6 132091657 132092428 -17424609 + ETnERV2-int LTR ERVK 1158 1924 -5482 1 1592 11350 64 3 8 chr6 132092433 132093923 -17423114 + L1Md_F3 LINE L1 4104 5586 -297 1 1592 7275 76 5 2 chr6 132093924 132094906 -17422131 + L1Md_F3 LINE L1 5588 6572 -12 1 1592 26 0 0 0 chr6 132094966 132094992 -17422045 + AT_rich Low_complexity Low_complexity 1 26 0 1 1592 274 338 40 46 chr6 132095058 132095210 -17421827 + B3 SINE B2 1 151 -65 1 1592 5436 146 2 23 chr6 132095642 132096553 -17420484 - L1_Mus2 LINE L1 -4 6562 5671 1 1592 14265 182 45 41 chr6 132096557 132101295 -17415742 - L1Md_F2 LINE L1 0 6582 1824 1 1592 293 24 0 0 chr6 132101358 132101400 -17415637 + L1Md_F3 LINE L1 6528 6569 -15 1 1592 319 366 46 46 chr6 132101725 132101877 -17415160 - RLTR31_Mur LTR ERVK -6 547 396 1 1592 1370 209 27 0 chr6 132102260 132102591 -17414446 - L1VL2 LINE L1 -2196 1419 1080 1 1592 5214 24 0 0 chr6 132102591 132103223 -17413814 + MT-int LTR MaLR 390 1021 -77 1 1592 1516 249 26 14 chr6 132103231 132103580 -17413457 - L1VL2 LINE L1 -2544 1071 721 1 1592 2564 87 6 0 chr6 132103580 132103924 -17413113 - ORR1A1 LTR MaLR 0 346 1 1 1592 1516 270 27 27 chr6 132103924 132104202 -17412835 - L1VL2 LINE L1 -5615 720 444 1 1592 365 358 19 26 chr6 132104293 132104542 -17412495 - Lx6 LINE L1 -310 6740 6535 1 1592 3386 203 17 0 chr6 132104554 132105299 -17411738 + L1_Mm LINE L1 4519 5276 -607 1 1592 3696 202 87 5 chr6 132105328 132106153 -17410884 - RMER17A2 LTR ERVK -12 894 2 1 1592 1898 101 4 0 chr6 132106153 132106421 -17410616 + L1_Mus3 LINE L1 5608 5876 -762 1 1592 937 111 0 0 chr6 132106425 132106551 -17410486 - B1_Mus2 SINE Alu -18 129 4 1 1592 717 163 16 43 chr6 132106555 132106741 -17410296 - L1_Mus3 LINE L1 -17 6621 6441 1 1592 3481 171 28 30 chr6 132106735 132107475 -17409562 + L1_Mus3 LINE L1 5882 6623 -15 1 1592 1006 121 0 0 chr6 132107475 132107615 -17409422 + B1_Mus2 SINE Alu 4 143 -4 1 1592 3481 171 28 30 chr6 132107615 132107633 -17409404 + L1_Mus3 LINE L1 6624 6638 0 1 1592 1151 91 6 0 chr6 132107657 132107832 -17409205 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 1 1592 530 358 29 7 chr6 132107864 132108145 -17408892 - Lx6 LINE L1 -1232 6228 5942 1 1592 249 139 0 0 chr6 132108258 132108301 -17408736 + (GGGAGA)n Simple_repeat Simple_repeat 6 48 0 1 1592 30 27 0 0 chr6 132108485 132108522 -17408515 + AT_rich Low_complexity Low_complexity 1 37 0 1 1592 5491 184 51 5 chr6 132112390 132113663 -17403374 + L1_Mus1 LINE L1 5611 7315 -381 1 1592 747 33 0 0 chr6 132113906 132113996 -17403041 + (GA)n Simple_repeat Simple_repeat 1 90 0 1 1592 307 328 56 75 chr6 132114034 132114301 -17402736 + RLTR18B LTR ERVK 21 282 -334 1 1592 475 288 80 41 chr6 132114362 132114647 -17402390 + RLTR18B LTR ERVK 223 572 -44 1 1592 262 206 0 0 chr6 132114652 132114720 -17402317 + L1_Mur2 LINE L1 1982 2049 -3828 1 1592 1655 157 51 7 chr6 132114740 132115036 -17402001 + RLTR27 LTR ERVK 1 309 0 1 1592 329 104 38 0 chr6 132115061 132115114 -17401923 + RLTR10-int LTR ERVK 163 267 -7314 1 1592 552 245 72 13 chr6 132115146 132115299 -17401738 + RLTR10-int LTR ERVK 655 816 -1171 1 1592 198 0 0 0 chr6 132115315 132115337 -17401700 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1592 300 291 0 49 chr6 132115350 132115473 -17401564 + A-rich Low_complexity Low_complexity 4 120 0 1 24 32518 81 1 17 chr6 132115697 132120881 -17396156 + L1Md_F2 LINE L1 489 5586 -297 1 1593 7937 53 1 2 chr6 132120882 132121866 -17395171 + L1Md_F2 LINE L1 5588 6570 -12 1 1593 663 13 0 0 chr6 132121921 132121997 -17395040 + (GAAAA)n Simple_repeat Simple_repeat 2 77 0 1 1593 2815 299 50 48 chr6 132122058 132123879 -17393158 + MMERVK10C-int LTR ERVK 3653 5476 -2105 1 1593 326 325 18 24 chr6 132124098 132124262 -17392775 + MMERVK10C-int LTR ERVK 6907 7069 -512 1 1593 1421 177 4 34 chr6 132124395 132124664 -17392373 + MMERVK10C-int LTR ERVK 7321 7581 0 1 1593 1872 152 13 7 chr6 132124664 132124969 -17392068 + RLTR27 LTR ERVK 1 307 -2 1 1593 2840 203 22 6 chr6 132124982 132125631 -17391406 + L1_Mur2 LINE L1 2049 2707 -3170 1 1593 754 209 27 11 chr6 132125989 132126173 -17390864 - RLTR22_Mur LTR ERVK -1491 357 171 1 1593 1269 254 17 36 chr6 132126184 132126543 -17390494 - Lx2 LINE L1 0 6997 6646 1 1593 527 287 70 76 chr6 132126553 132126998 -17390039 + RMER3D-int LTR ERVK 500 941 -1385 1 1593 233 214 135 56 chr6 132127000 132127089 -17389948 + RMER4A LTR ERVK 334 429 -37 1 1593 2578 253 36 72 chr6 132127159 132128310 -17388727 + RMER3D-int LTR ERVK 1733 2841 -1 1 1593 1696 213 3 19 chr6 132128313 132128672 -17388365 + BGLII_B LTR ERVK 11 363 -78 1 1593 435 179 107 0 chr6 132129209 132129293 -17387744 + BGLII_B LTR ERVK 349 441 0 1 1593 279 104 0 0 chr6 132130282 132130330 -17386707 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 1 1593 1985 220 46 84 chr6 132131625 132132592 -17384445 - ORR1B1-int LTR MaLR -191 1772 15 1 1593 288 0 0 0 chr6 132132930 132132962 -17384075 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1593 17581 100 13 8 chr6 132133984 132137253 -17379784 - L1Md_F2 LINE L1 0 6582 3307 1 1593 3639 114 0 7 chr6 132137265 132137837 -17379200 - L1Md_F2 LINE L1 -3604 2279 1712 1 1593 16582 117 5 2 chr6 132137836 132140409 -17376628 + L1Md_F2 LINE L1 1970 4550 -1333 1 1593 1543 71 19 0 chr6 132140418 132140629 -17376408 - L1Md_F3 LINE L1 -14 6570 6356 1 1593 34491 81 2 11 chr6 132140631 132146434 -17370603 - L1Md_F3 LINE L1 -381 6203 459 1 1593 6368 110 35 26 chr6 132146436 132147471 -17369566 + L1Md_F2 LINE L1 4542 5585 -298 1 1593 6940 96 3 4 chr6 132147472 132148457 -17368580 + L1Md_F2 LINE L1 5587 6570 -12 1 1593 541 158 22 211 chr6 132148986 132149171 -17367866 + URR1B DNA MER1_type 66 215 -10 1 1593 266 375 58 21 chr6 132149416 132149656 -17367381 - MLT-int LTR MaLR -927 808 560 1 1593 1082 109 0 0 chr6 132149669 132149816 -17367221 + B1_Mus2 SINE Alu 1 147 0 1 1593 600 107 0 0 chr6 132150107 132150191 -17366846 - BC1_Mm scRNA scRNA -68 84 1 1 1593 229 283 57 0 chr6 132150151 132150204 -17366833 - ZP3AR Satellite Satellite -130 82 27 1 1593 201 178 0 0 chr6 132151123 132151168 -17365869 + CT-rich Low_complexity Low_complexity 6 50 0 1 1593 309 118 0 0 chr6 132151169 132151220 -17365817 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 1 1593 5417 94 1 0 chr6 132151220 132151965 -17365072 - L1_Mm LINE L1 -658 5225 4480 1 1593 1739 101 4 4 chr6 132151965 132152223 -17364814 + L1Md_F2 LINE L1 6323 6580 -2 1 1593 502 293 99 0 chr6 132152338 132152529 -17364508 + B3 SINE B2 1 210 -6 1 1593 878 163 0 0 chr6 132152724 132152871 -17364166 + B1_Mus1 SINE Alu 1 147 -1 1 1593 299 79 10 73 chr6 132152883 132152979 -17364058 + A-rich Low_complexity Low_complexity 1 90 0 1 1593 634 272 29 11 chr6 132153124 132153299 -17363738 - Lx4B LINE L1 -108 6950 6773 1 1593 611 244 174 50 chr6 132153437 132153800 -17363237 + RMER17C LTR ERVK 1 408 -2 1 1593 405 0 0 0 chr6 132153896 132153941 -17363096 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1593 2139 321 87 42 chr6 132154135 132155377 -17361660 + RMER1A Other Other 6 1005 -25 1 1593 1458 249 77 55 chr6 132155400 132155957 -17361080 + RLTR22_Mur LTR ERVK 1072 1610 -238 1 1593 24 32 0 0 chr6 132159989 132160020 -17357017 + AT_rich Low_complexity Low_complexity 1 31 0 1 1593 1017 131 17 0 chr6 132160729 132160905 -17356132 - L1_Mus1 LINE L1 -205 6362 6184 1 1593 938 181 5 16 chr6 132160907 132161098 -17355939 + L1_Mus1 LINE L1 6379 6567 0 1 1593 775 179 4 9 chr6 132162074 132162306 -17354731 + CT-rich Low_complexity Low_complexity 1 231 0 1 1593 377 257 55 41 chr6 132162330 132162476 -17354561 + B1_Mur3 SINE Alu 1 148 -1 1 1593 289 293 27 30 chr6 132163720 132163929 -17353108 - L1P5 LINE L1 -754 5537 5333 1 1593 1606 276 92 16 chr6 132164081 132164638 -17352399 + Lx7 LINE L1 6742 7340 -356 1 1593 380 303 75 65 chr6 132164896 132165097 -17351940 + B4 SINE B4 3 205 -87 1 1593 1033 259 37 31 chr6 132165215 132165542 -17351495 + ORR1A4 LTR MaLR 1 329 0 1 1593 562 330 62 91 chr6 132166085 132166423 -17350614 + RLTR18B LTR ERVK 3 338 -278 2 1593 2048 156 7 42 chr6 132166423 132166831 -17350206 + L1Md_F2 LINE L1 6185 6578 -4 2 1593 562 293 77 62 chr6 132166831 132167036 -17350001 + RLTR18B LTR ERVK 205 416 -96 2 1593 2474 196 63 46 chr6 132168211 132168843 -17348194 - RMER6A LTR ERVK 0 756 114 2 1593 198 0 0 0 chr6 132169525 132169547 -17347490 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1593 329 369 71 32 chr6 132169591 132169843 -17347194 - B4 SINE B4 -28 264 3 2 1593 27 0 0 0 chr6 132169949 132169976 -17347061 + AT_rich Low_complexity Low_complexity 1 27 0 2 1593 205 75 0 48 chr6 132170331 132170373 -17346664 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2 1593 892 144 0 46 chr6 132170375 132170528 -17346509 - B1_Mus1 SINE Alu -1 147 2 2 1593 622 222 17 69 chr6 132170610 132170784 -17346253 - RLTR28B LTR ERVL -234 247 83 2 1593 367 40 53 13 chr6 132170784 132170859 -17346178 + (TTTG)n Simple_repeat Simple_repeat 2 79 0 2 1593 4133 177 56 2 chr6 132171202 132172008 -17345029 - Lx2 LINE L1 -54 6943 6095 2 1593 687 290 86 48 chr6 132172452 132172767 -17344270 - Lx2B LINE L1 -24 6976 6650 2 1593 220 91 0 43 chr6 132173048 132173094 -17343943 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 2 1593 792 234 17 35 chr6 132173167 132173550 -17343487 - Lx3B LINE L1 -1 6999 6485 2 1593 833 142 14 0 chr6 132173547 132173688 -17343349 - L1_Mur1 LINE L1 -438 5448 5306 2 1593 1444 169 44 109 chr6 132173688 132174101 -17342936 + L1_Mur1 LINE L1 4981 5366 -520 2 1593 463 353 29 6 chr6 132175247 132175421 -17341616 + RLTR18B LTR ERVK 9 186 -326 2 1593 499 325 61 32 chr6 132175510 132175790 -17341247 + RLTR18B LTR ERVK 140 427 -85 2 1593 21 0 0 0 chr6 132176496 132176517 -17340520 + AT_rich Low_complexity Low_complexity 1 21 0 2 1593 2571 201 50 42 chr6 132176966 132177604 -17339433 - RMER6A LTR ERVK 0 756 114 2 1593 1709 193 14 19 chr6 132179977 132180336 -17336701 - Lx2 LINE L1 -51 6946 6590 2 1593 664 297 77 54 chr6 132180667 132181016 -17336021 - Lx2B LINE L1 -5 6995 6639 2 1593 198 0 0 0 chr6 132181300 132181322 -17335715 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2 1593 605 250 43 19 chr6 132181421 132181629 -17335408 - Lx3B LINE L1 -4 6969 6757 2 1593 829 181 0 0 chr6 132181627 132181776 -17335261 - Lx3B LINE L1 -340 6633 6485 2 1593 726 139 42 35 chr6 132181773 132181915 -17335122 - L1_Mur1 LINE L1 -438 5448 5306 2 1593 1370 171 65 51 chr6 132181916 132182286 -17334751 + L1_Mur1 LINE L1 4982 5356 -530 2 1593 770 279 44 91 chr6 132184020 132184406 -17332631 + RLTR9A LTR ERVK 1 368 0 2 1593 536 42 14 0 chr6 132184736 132184807 -17332230 + (AATAG)n Simple_repeat Simple_repeat 4 75 0 2 1593 558 0 0 0 chr6 132184844 132184906 -17332131 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1593 268 257 0 28 chr6 132184911 132184983 -17332054 + ETnERV2-int LTR ERVK 355 424 -4982 2 1593 2355 207 47 56 chr6 132184990 132185764 -17331273 + ETnERV2-int LTR ERVK 1158 1924 -5482 2 1593 10952 59 1 3 chr6 132185769 132187254 -17329783 + L1Md_F3 LINE L1 4104 5586 -297 2 1593 7328 66 7 12 chr6 132187254 132188245 -17328792 + L1Md_F3 LINE L1 5587 6572 -12 2 1593 27 0 0 0 chr6 132188298 132188325 -17328712 + AT_rich Low_complexity Low_complexity 1 27 0 2 1593 261 349 33 46 chr6 132188391 132188544 -17328493 + B3 SINE B2 1 151 -65 2 1593 4547 162 3 71 chr6 132188978 132189933 -17327104 - L1_Mus1 LINE L1 -4 6563 5674 2 1593 12189 178 57 58 chr6 132189940 132191692 -17325345 - L1Md_F2 LINE L1 0 6582 4803 2 1593 229 203 23 139 chr6 132191692 132191778 -17325259 + RMER20A LTR ERVK 186 261 -255 2 1593 12189 178 57 58 chr6 132191778 132194707 -17322330 - L1Md_F2 LINE L1 0 4802 1824 2 1593 279 24 0 0 chr6 132194766 132194807 -17322230 + L1Md_F3 LINE L1 6528 6568 -16 2 1593 429 338 19 49 chr6 132195132 132195294 -17321743 - RLTR31_Mur LTR ERVK -6 547 391 2 1593 189 0 0 0 chr6 132195413 132195434 -17321603 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1593 24877 30 0 1 chr6 132195515 132199325 -17317712 - L1Md_T LINE L1 0 6582 2777 2 1593 1844 224 25 5 chr6 132199599 132200286 -17316751 - L1VL4 LINE L1 -2196 1419 720 2 1593 2550 90 6 0 chr6 132200286 132200630 -17316407 - ORR1A1 LTR MaLR 0 346 1 2 1593 1422 255 26 22 chr6 132200630 132200908 -17316129 - L1VL4 LINE L1 -5615 720 444 2 1593 348 330 37 21 chr6 132201003 132201249 -17315788 - Lx6 LINE L1 -310 6740 6535 2 1593 3117 203 17 1 chr6 132201256 132202002 -17315035 + L1_Mus3 LINE L1 4519 5276 -607 2 1593 3669 207 87 5 chr6 132202031 132202856 -17314181 - RMER17A2 LTR ERVK -12 894 2 2 1593 5231 154 21 17 chr6 132202857 132203866 -17313171 + L1_Mus3 LINE L1 5609 6621 -17 2 1593 909 156 0 0 chr6 132203870 132204005 -17313032 + B1_Mus2 SINE Alu 4 138 -9 2 1593 240 59 0 0 chr6 132204005 132204039 -17312998 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1593 999 147 0 0 chr6 132204042 132204219 -17312818 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2 1593 234 176 0 0 chr6 132204222 132204273 -17312764 + GA-rich Low_complexity Low_complexity 2 52 0 2 1593 422 369 29 7 chr6 132204298 132204579 -17312458 - Lx6 LINE L1 -1232 6228 5942 2 1593 297 109 0 0 chr6 132204689 132204735 -17312302 + (GGGAGA)n Simple_repeat Simple_repeat 3 48 0 2 1593 27 29 0 0 chr6 132204922 132204956 -17312081 + AT_rich Low_complexity Low_complexity 1 34 0 2 1593 246 309 0 0 chr6 132205238 132205293 -17311744 - B1_Mur1 SINE Alu -9 140 86 2 1593 2675 40 0 0 chr6 132205304 132205628 -17311409 - L1Md_T LINE L1 -2 6580 6257 2 1593 270 207 33 33 chr6 132207127 132207217 -17309820 + (CTTAG)n Simple_repeat Simple_repeat 2 91 0 2 1593 323 316 0 25 chr6 132208088 132208169 -17308868 - RSINE1 SINE B4 -30 135 57 2 1593 790 308 72 12 chr6 132209152 132209556 -17307481 + Lx7 LINE L1 6888 7315 -381 2 1593 5302 128 25 0 chr6 132209557 132210441 -17306596 + L1_Mus1 LINE L1 5660 6565 -2 2 1593 519 17 0 0 chr6 132210631 132210691 -17306346 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1593 738 62 0 0 chr6 132210749 132210845 -17306192 + (GA)n Simple_repeat Simple_repeat 1 96 0 2 1593 248 344 56 75 chr6 132210884 132211151 -17305886 + RLTR18 LTR ERVK 21 282 -334 2 1593 435 273 104 31 chr6 132211266 132211459 -17305578 + RLTR18B LTR ERVK 223 429 -83 2 1593 249 206 0 0 chr6 132211512 132211580 -17305457 + L1_Mur2 LINE L1 1982 2049 -3828 2 1593 1749 139 50 10 chr6 132211600 132211897 -17305140 + RLTR27 LTR ERVK 1 309 0 2 1593 322 104 38 0 chr6 132211922 132211975 -17305062 + RLTR10-int LTR ERVK 163 267 -7314 2 1593 577 242 76 16 chr6 132212007 132212192 -17304845 + RLTR10-int LTR ERVK 655 850 -1137 2 1593 362 280 0 41 chr6 132212200 132212323 -17304714 + A-rich Low_complexity Low_complexity 3 120 0 2 1593 2054 313 42 41 chr6 132212605 132214417 -17302620 + MMERVK10C-int LTR ERVK 3653 5465 -2116 2 1593 329 302 25 25 chr6 132214646 132214809 -17302228 + MMERVK10C-int LTR ERVK 6907 7069 -512 2 1593 1345 173 4 30 chr6 132214943 132215211 -17301826 + MMERVK10C-int LTR ERVK 7321 7581 0 2 1593 1879 155 13 7 chr6 132215211 132215516 -17301521 + RLTR27 LTR ERVK 1 307 -2 2 1593 2104 218 18 5 chr6 132215527 132216099 -17300938 + L1_Mur2 LINE L1 2048 2626 -3251 2 1593 2178 95 119 11 chr6 132216106 132216458 -17300579 + RLTR10 LTR ERVK 1 390 0 2 1593 5381 58 0 0 chr6 132216458 132217151 -17299886 + RLTR10-int LTR ERVK 302 994 -993 2 1593 554 321 69 15 chr6 132217205 132217597 -17299440 + IAP-d-int LTR ERVK 738 1150 -5392 2 1593 8288 25 0 0 chr6 132217679 132218674 -17298363 + RLTR10-int LTR ERVK 990 1984 -3 2 1593 2175 92 119 11 chr6 132218676 132219028 -17298009 + RLTR10 LTR ERVK 1 390 0 2 1593 533 58 0 0 chr6 132219028 132219097 -17297940 + RLTR10-int LTR ERVK 302 370 -1617 2 1593 8693 101 20 0 chr6 132219099 132220429 -17296608 - L1_Mm LINE L1 -1220 4663 3307 2 1593 2352 118 0 5 chr6 132220441 132220843 -17296194 - L1_Mm LINE L1 -3604 2279 1880 2 1593 2209 86 119 11 chr6 132220843 132221195 -17295842 - RLTR10 LTR ERVK 0 390 1 2 1593 8275 26 0 0 chr6 132221197 132222192 -17294845 - RLTR10-int LTR ERVK -3 1984 990 2 1593 516 317 79 25 chr6 132222274 132222666 -17294371 - RLTR10-int LTR ERVK -5987 1594 1316 2 1593 5444 55 0 0 chr6 132222720 132223413 -17293624 - RLTR10-int LTR ERVK -993 994 302 2 1593 2295 78 119 11 chr6 132223413 132223765 -17293272 - RLTR10 LTR ERVK 0 390 1 2 1593 8288 25 0 0 chr6 132223767 132224762 -17292275 - RLTR10-int LTR ERVK -3 1984 990 2 1593 534 319 72 15 chr6 132224844 132225235 -17291802 - IAP-d-int LTR ERVK -5392 1150 738 2 1593 5355 61 0 0 chr6 132225289 132225982 -17291055 - RLTR10-int LTR ERVK -993 994 302 2 1593 2354 69 119 11 chr6 132225982 132226334 -17290703 - RLTR10 LTR ERVK 0 390 1 2 1593 1192 87 6 6 chr6 132226334 132226508 -17290529 - L1_Mm LINE L1 -3998 1885 1712 2 1593 15538 120 5 2 chr6 132226506 132229086 -17287951 + L1_Mm LINE L1 1961 4550 -1333 2 1593 1638 65 18 0 chr6 132229099 132229316 -17287721 - L1Md_F3 LINE L1 -15 6569 6349 2 1593 14258 66 1 1 chr6 132229317 132231614 -17285423 - L1Md_F3 LINE L1 -387 6197 3900 2 1593 703 236 18 1 chr6 132231619 132231823 -17285214 - L1Md_A LINE L1 -6298 426 251 2 1593 6398 111 6 34 chr6 132231825 132232899 -17284138 + L1Md_F2 LINE L1 4542 5585 -298 2 1593 6973 90 4 15 chr6 132232900 132233904 -17283133 + L1Md_F2 LINE L1 5587 6579 -3 2 1593 529 158 22 211 chr6 132234435 132234620 -17282417 + URR1B DNA MER1_type 66 215 -10 2 1593 239 375 68 20 chr6 132234865 132235113 -17281924 - MLT-int LTR MaLR -927 808 549 2 1593 1116 95 0 0 chr6 132235117 132235264 -17281773 + B1_Mus2 SINE Alu 1 147 0 2 1593 180 0 0 0 chr6 132235264 132235284 -17281753 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1593 542 141 0 0 chr6 132235572 132235657 -17281380 - BC1_Mm scRNA scRNA -67 85 1 2 1593 180 200 0 0 chr6 132236585 132236630 -17280407 + CT-rich Low_complexity Low_complexity 6 50 0 2 1593 243 157 0 0 chr6 132236631 132236682 -17280355 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 2 1593 6048 93 21 0 chr6 132236737 132236881 -17280156 - L1_Mm LINE L1 -492 5391 5248 2 1593 672 36 0 0 chr6 132236881 132236964 -17280073 + (TA)n Simple_repeat Simple_repeat 2 84 0 2 1593 6048 93 21 0 chr6 132236964 132237712 -17279325 - L1_Mm LINE L1 -636 5247 4481 2 1593 1920 77 4 4 chr6 132237712 132237972 -17279065 + L1Md_F2 LINE L1 6323 6582 0 2 1593 491 298 99 0 chr6 132238092 132238283 -17278754 + B3 SINE B2 1 210 -6 2 1593 876 163 0 0 chr6 132238478 132238625 -17278412 + B1_Mus1 SINE Alu 1 147 -1 2 1593 238 70 32 75 chr6 132238643 132238736 -17278301 + A-rich Low_complexity Low_complexity 2 90 0 2 1593 233 254 59 15 chr6 132238902 132238970 -17278067 + MLT1H-int LTR MaLR 569 639 -770 2 1593 349 235 0 0 chr6 132238976 132239044 -17277993 - Lx4B LINE L1 -201 6857 6790 2 1593 586 241 174 47 chr6 132239200 132239562 -17277475 + RMER17C LTR ERVK 1 408 -2 2 1593 366 61 0 0 chr6 132239656 132239705 -17277332 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1593 5457 122 12 2 chr6 132240162 132241059 -17275978 - L1_Mus1 LINE L1 -2 6565 5660 2 1593 855 308 64 5 chr6 132241060 132241464 -17275573 - Lx7 LINE L1 -381 7315 6888 2 1593 348 297 14 0 chr6 132242440 132242514 -17274523 + RSINE1 SINE B4 61 135 -30 2 1593 232 309 0 0 chr6 132244953 132245008 -17272029 + B1_Mur1 SINE Alu 86 140 -9 2 1593 210 118 0 0 chr6 132245015 132245049 -17271988 + (CAG)n Simple_repeat Simple_repeat 2 35 0 2 1593 21 57 0 0 chr6 132245283 132245318 -17271719 + AT_rich Low_complexity Low_complexity 1 35 0 2 1593 255 175 0 0 chr6 132245507 132245564 -17271473 + CT-rich Low_complexity Low_complexity 3 59 0 2 1593 394 364 38 11 chr6 132245684 132245945 -17271092 + Lx6 LINE L1 5961 6228 -1232 2 1593 585 76 0 0 chr6 132245959 132246038 -17270999 + (TTTC)n Simple_repeat Simple_repeat 1 79 0 2 1593 1001 113 0 0 chr6 132246039 132246172 -17270865 - B1_Mus2 SINE Alu -13 134 2 2 1593 2348 172 19 21 chr6 132246172 132246653 -17270384 - L1_Mus3 LINE L1 -15 6623 6144 2 1593 524 219 65 5 chr6 132246653 132246697 -17270340 + MusHAL1 LINE L1 590 642 -2712 3 1593 191 61 30 0 chr6 132246697 132246730 -17270307 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 3 1593 1984 206 24 2 chr6 132246730 132247236 -17269801 + MusHAL1 LINE L1 642 1158 -2195 3 1593 509 329 51 45 chr6 132247252 132247589 -17269448 + RLTR17 LTR ERVK 33 420 -272 3 1593 399 344 19 49 chr6 132247609 132247771 -17269266 + RLTR31_Mur LTR ERVK 391 547 -6 3 1593 13075 239 47 16 chr6 132247774 132249493 -17267544 + L1_Mus2 LINE L1 1714 3470 -2407 3 1593 312 111 0 0 chr6 132249493 132249547 -17267490 + (CAAAT)n Simple_repeat Simple_repeat 1 54 0 3 1593 13075 239 47 16 chr6 132249547 132250668 -17266369 + L1_Mus2 LINE L1 3471 4671 -1206 3 1593 288 0 0 0 chr6 132250668 132250700 -17266337 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 199 13075 207 40 13 chr6 132250700 132251951 -17265086 + L1_Mus2 LINE L1 4672 5940 -626 3 1594 279 0 0 0 chr6 132251951 132251982 -17265055 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1594 5774 125 19 4 chr6 132251982 132252595 -17264442 + L1_Mus2 LINE L1 5941 6557 -9 3 1594 33820 46 0 3 chr6 132252624 132257893 -17259144 + L1Md_Gf LINE L1 242 5589 -297 3 1594 8912 7 3 0 chr6 132257893 132258886 -17258151 + L1Md_T LINE L1 5587 6582 0 3 1594 33820 42 0 0 chr6 132258886 132258902 -17258135 + L1Md_Gf LINE L1 5590 5606 -280 3 1594 1956 292 70 37 chr6 132258895 132260138 -17256899 + RMER1B Other Other 22 1054 -12 3 1594 1242 245 104 30 chr6 132260148 132260279 -17256758 + RLTR22_Mur LTR ERVK 1178 1306 -542 3 1594 525 32 0 0 chr6 132260279 132260342 -17256695 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1594 1242 283 82 24 chr6 132260342 132260748 -17256289 + RLTR22_Mur LTR ERVK 1072 1611 -237 3 1594 366 23 0 0 chr6 132261685 132261728 -17255309 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1594 204 227 0 0 chr6 132262651 132262695 -17254342 + (CAT)n Simple_repeat Simple_repeat 1 44 0 3 1594 34 42 0 0 chr6 132262885 132262933 -17254104 + AT_rich Low_complexity Low_complexity 1 48 0 3 1594 185 299 125 38 chr6 132263427 132263507 -17253530 - L4 LINE RTE -1875 154 68 3 1594 210 380 92 9 chr6 132264011 132264120 -17252917 + RSINE1 SINE B4 3 120 -45 3 1594 1028 114 17 0 chr6 132264942 132265118 -17251919 - L1_Mus1 LINE L1 -205 6362 6184 3 1594 940 175 5 16 chr6 132265120 132265306 -17251731 + L1_Mus1 LINE L1 6379 6562 -5 3 1594 7292 35 7 0 chr6 132265779 132266643 -17250394 + L1Md_T LINE L1 5712 6581 -1 3 1594 1321 273 109 22 chr6 132267927 132268478 -17248559 + Lx7 LINE L1 6742 7340 -356 3 1594 4939 134 38 64 chr6 132268576 132269580 -17247457 + RLTR13A3 LTR ERVK 1 978 0 3 1594 314 358 52 26 chr6 132269746 132269901 -17247136 + B4 SINE B4 3 161 -131 3 1594 1262 238 22 12 chr6 132270066 132270389 -17246648 + ORR1A4 LTR MaLR 1 326 -3 3 1594 359 333 18 35 chr6 132270941 132271112 -17245925 + RLTR18 LTR ERVK 5 172 -444 3 1594 250 323 0 15 chr6 132271210 132271276 -17245761 + RLTR18 LTR ERVK 140 204 -308 3 1594 2043 144 3 46 chr6 132271277 132271669 -17245368 + L1Md_F2 LINE L1 6185 6559 -23 3 1594 189 0 0 0 chr6 132271669 132271690 -17245347 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3 1594 338 292 59 48 chr6 132271710 132271897 -17245140 + RLTR18 LTR ERVK 228 416 -96 3 1594 21 0 0 0 chr6 132272653 132272674 -17244363 + AT_rich Low_complexity Low_complexity 1 21 0 3 1594 2371 202 63 47 chr6 132273065 132273698 -17243339 - RMER6A LTR ERVK 0 756 114 3 1594 205 196 18 0 chr6 132274351 132274407 -17242630 + T-rich Low_complexity Low_complexity 3 59 0 3 1594 310 366 76 32 chr6 132274439 132274690 -17242347 - B4 SINE B4 -28 264 3 3 1594 21 36 0 0 chr6 132274795 132274823 -17242214 + AT_rich Low_complexity Low_complexity 1 28 0 3 1594 217 51 0 49 chr6 132275183 132275224 -17241813 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1594 1018 119 0 0 chr6 132275228 132275371 -17241666 - B1_Mus1 SINE Alu -1 147 5 3 1594 764 197 16 82 chr6 132275456 132275650 -17241387 - RLTR28B LTR ERVL -235 246 66 3 1594 253 108 77 0 chr6 132275653 132275718 -17241319 - Lx3C LINE L1 -54 6922 6853 3 1594 4133 172 35 4 chr6 132275969 132276762 -17240275 - Lx2 LINE L1 -124 6873 6095 3 1594 636 294 91 42 chr6 132277187 132277517 -17239520 - Lx2B LINE L1 -5 6995 6650 3 1594 220 91 0 43 chr6 132277797 132277843 -17239194 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 3 1594 941 220 34 42 chr6 132277904 132278147 -17238890 - Lx3B LINE L1 -1 6999 6753 3 1594 856 191 0 0 chr6 132278141 132278288 -17238749 - Lx3B LINE L1 -340 6633 6487 3 1594 786 152 22 0 chr6 132278289 132278427 -17238610 - L1_Mur1 LINE L1 -440 5446 5306 3 1594 1366 179 41 115 chr6 132278427 132278844 -17238193 + L1_Mur1 LINE L1 4981 5366 -520 3 1594 241 327 128 23 chr6 132279627 132279799 -17237238 - MLT1B LTR MaLR -4 386 197 3 1594 478 362 23 6 chr6 132279994 132280169 -17236868 + RLTR18B LTR ERVK 9 186 -326 3 1594 457 343 60 36 chr6 132280258 132280539 -17236498 + RLTR18B LTR ERVK 140 427 -85 3 1594 21 0 0 0 chr6 132281247 132281268 -17235769 + AT_rich Low_complexity Low_complexity 1 21 0 3 1594 2587 196 47 42 chr6 132281717 132282357 -17234680 - RMER6A LTR ERVK 0 756 114 3 1594 185 0 40 0 chr6 132284538 132284563 -17232474 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1594 4218 190 42 11 chr6 132284748 132285573 -17231464 - Lx2 LINE L1 -51 6946 6096 3 1594 699 318 89 32 chr6 132285996 132286334 -17230703 - Lx2B LINE L1 -5 6995 6639 3 1594 733 250 43 14 chr6 132286729 132286936 -17230101 - Lx3C LINE L1 -4 6969 6757 3 1594 880 181 0 0 chr6 132286934 132287083 -17229954 - Lx3C LINE L1 -343 6633 6485 3 1594 831 147 0 27 chr6 132287080 132287227 -17229810 - L1_Mur1 LINE L1 -438 5448 5306 3 1594 1418 197 55 47 chr6 132287227 132287610 -17229427 + L1_Mur1 LINE L1 4981 5366 -520 3 1594 281 339 128 17 chr6 132288413 132288593 -17228444 - MLT1B LTR MaLR -4 386 187 3 1594 810 268 55 99 chr6 132289331 132289580 -17227457 + RLTR9A LTR ERVK 1 233 -135 3 1594 261 0 0 0 chr6 132289580 132289609 -17227428 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1594 810 268 55 99 chr6 132289609 132289744 -17227293 + RLTR9A LTR ERVK 234 368 0 3 1594 652 127 25 0 chr6 132290077 132290195 -17226842 + (AATAG)n Simple_repeat Simple_repeat 3 123 0 3 1594 585 0 0 0 chr6 132290252 132290317 -17226720 + (GA)n Simple_repeat Simple_repeat 1 65 0 3 1594 320 272 0 24 chr6 132290324 132290407 -17226630 + ETnERV2-int LTR ERVK 355 435 -4971 3 1594 2514 203 46 64 chr6 132290403 132291202 -17225835 + ETnERV2-int LTR ERVK 1158 1942 -5464 3 1594 298 365 20 33 chr6 132291293 132291446 -17225591 + B3 SINE B2 1 151 -65 3 1594 3641 163 3 2 chr6 132291878 132292500 -17224537 - L1_Mus2 LINE L1 -4 6562 5940 3 1594 6904 54 5 1 chr6 132292515 132293386 -17223651 - L1Md_F3 LINE L1 -15 6569 5696 3 1594 5442 150 4 1 chr6 132293385 132294378 -17222659 - L1_Mus3 LINE L1 -619 5947 4952 3 1594 3586 165 21 13 chr6 132294380 132295079 -17221958 + L1_Mus3 LINE L1 5917 6621 -17 3 1594 962 96 15 0 chr6 132295087 132295222 -17221815 + B1_Mur4 SINE Alu 9 145 -5 3 1594 222 62 0 0 chr6 132295229 132295261 -17221776 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1594 833 60 9 0 chr6 132295261 132295377 -17221660 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 3 1594 507 350 42 18 chr6 132295392 132295677 -17221360 - Lx6 LINE L1 -1232 6228 5937 3 1594 486 129 0 0 chr6 132295767 132295852 -17221185 + (GA)n Simple_repeat Simple_repeat 2 86 0 3 1594 29 28 0 0 chr6 132296022 132296058 -17220979 + AT_rich Low_complexity Low_complexity 1 36 0 3 1594 225 327 0 0 chr6 132296341 132296396 -17220641 - B1_Mur1 SINE Alu -9 140 86 3 1594 296 321 0 35 chr6 132298823 132298910 -17218127 - RSINE1 SINE B4 -25 140 57 3 1594 930 301 97 32 chr6 132299887 132300289 -17216748 + Lx7 LINE L1 6888 7315 -381 3 1594 5979 120 10 1 chr6 132300290 132301188 -17215849 + L1_Mus1 LINE L1 5660 6565 -2 3 1594 859 120 0 12 chr6 132301437 132301597 -17215440 + (GA)n Simple_repeat Simple_repeat 1 158 0 3 1594 230 305 88 149 chr6 132301614 132301876 -17215161 + RLTR18B LTR ERVK 28 273 -239 3 1594 413 269 74 29 chr6 132302020 132302214 -17214823 + RLTR18B LTR ERVK 261 565 -51 3 1594 260 227 0 0 chr6 132302219 132302294 -17214743 + L1_Mur2 LINE L1 1975 2049 -3828 3 1594 1905 128 20 7 chr6 132302319 132302619 -17214418 + RLTR27 LTR ERVK 6 309 0 3 1594 280 130 0 0 chr6 132302651 132302697 -17214340 + RLTR10-int LTR ERVK 222 267 -7314 3 1594 433 225 128 21 chr6 132302761 132302902 -17214135 + RLTR10-int LTR ERVK 698 853 -1134 3 1594 189 237 0 51 chr6 132302903 132303001 -17214036 + A-rich Low_complexity Low_complexity 4 96 0 3 1594 2830 294 53 55 chr6 132303292 132305135 -17211902 + MMERVK10C-int LTR ERVK 3638 5476 -2105 3 1594 1376 241 32 39 chr6 132305354 132305923 -17211114 + MMERVK10C-int LTR ERVK 6907 7581 0 3 1594 1900 145 13 7 chr6 132305923 132306228 -17210809 + RLTR27 LTR ERVK 1 307 -2 3 1594 2921 201 12 8 chr6 132306238 132306893 -17210144 + L1_Mur2 LINE L1 2050 2707 -3170 3 1594 794 214 26 10 chr6 132307254 132307448 -17209589 - RLTR22_Mur LTR ERVK -1491 357 161 3 1594 1391 228 14 49 chr6 132307449 132307814 -17209223 - Lx2 LINE L1 0 6997 6646 3 1594 3792 244 68 59 chr6 132307824 132309379 -17207658 + MYSERV16_I-int LTR ERVK 500 2067 -259 3 1594 645 262 85 57 chr6 132309379 132309626 -17207411 + RMER1A Other Other 761 1014 -16 3 1594 1457 273 52 52 chr6 132309638 132310202 -17206835 + RLTR22_Mus LTR ERVK 1038 1562 -246 3 1594 204 227 0 0 chr6 132312045 132312089 -17204948 + (CAT)n Simple_repeat Simple_repeat 1 44 0 3 1594 211 316 100 12 chr6 132312800 132312880 -17204157 - L4 LINE RTE -1875 154 68 3 1594 245 361 92 9 chr6 132313384 132313493 -17203544 + RSINE1 SINE B4 3 120 -45 3 1594 24 32 0 0 chr6 132313574 132313605 -17203432 + AT_rich Low_complexity Low_complexity 1 31 0 3 1594 981 139 17 0 chr6 132314320 132314493 -17202544 - L1_Mus1 LINE L1 -205 6362 6187 3 1594 945 181 5 16 chr6 132314498 132314689 -17202348 + L1_Mus1 LINE L1 6379 6567 0 3 1594 666 152 5 43 chr6 132315679 132315865 -17201172 + CT-rich Low_complexity Low_complexity 1 179 0 3 1594 377 257 55 41 chr6 132315920 132316066 -17200971 + B1_Mur3 SINE Alu 1 148 -1 3 1594 277 298 21 30 chr6 132317319 132317529 -17199508 - L1P5 LINE L1 -754 5537 5333 3 1594 1566 283 93 18 chr6 132317681 132318239 -17198798 + Lx7 LINE L1 6742 7341 -355 3 1594 349 306 85 75 chr6 132318496 132318697 -17198340 + B4 SINE B4 3 205 -87 3 1594 1116 259 18 27 chr6 132318815 132319145 -17197892 + ORR1A4 LTR MaLR 1 327 -2 3 1594 338 338 12 48 chr6 132319696 132319864 -17197173 + RLTR18 LTR ERVK 5 166 -450 3 1594 313 358 52 26 chr6 132319953 132320108 -17196929 + B4 SINE B4 3 161 -131 3 1594 1267 238 22 12 chr6 132320273 132320596 -17196441 + ORR1A4 LTR MaLR 1 326 -3 3 1594 522 325 64 98 chr6 132321137 132321478 -17195559 + RLTR18B LTR ERVK 3 340 -276 3 1594 1852 162 10 73 chr6 132321478 132321891 -17195146 + L1Md_F2 LINE L1 6192 6578 -4 3 1594 522 289 76 72 chr6 132321891 132322096 -17194941 + RLTR18B LTR ERVK 204 416 -96 3 1594 26 30 0 0 chr6 132322859 132322892 -17194145 + AT_rich Low_complexity Low_complexity 1 33 0 3 1594 2467 199 62 46 chr6 132323271 132323904 -17193133 - RMER6A LTR ERVK 0 756 114 3 1594 329 366 76 32 chr6 132324639 132324890 -17192147 - B4 SINE B4 -28 264 3 4 1594 226 50 0 48 chr6 132325384 132325426 -17191611 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 4 1594 923 170 0 0 chr6 132325433 132325580 -17191457 - B1_Mus1 SINE Alu 0 148 2 4 1594 650 235 15 101 chr6 132325661 132325860 -17191177 - RLTR28B LTR ERVL -234 247 66 4 1594 243 138 77 0 chr6 132325863 132325928 -17191109 - Lx3C LINE L1 -54 6922 6853 4 1594 4504 171 52 2 chr6 132326186 132326994 -17190043 - Lx2 LINE L1 -55 6942 6095 4 1594 826 284 50 44 chr6 132327439 132327771 -17189266 - Lx2B LINE L1 -24 6976 6637 4 1594 224 95 0 67 chr6 132328035 132328080 -17188957 + T-rich Low_complexity Low_complexity 3 44 0 4 1594 897 227 36 19 chr6 132328142 132328382 -17188655 - Lx3B LINE L1 -2 6998 6753 4 1594 859 188 0 0 chr6 132328376 132328525 -17188512 - Lx3B LINE L1 -340 6633 6485 4 1594 849 156 14 0 chr6 132328522 132328663 -17188374 - L1_Mur1 LINE L1 -438 5448 5306 4 1594 1609 165 39 103 chr6 132328663 132329069 -17187968 + L1_Mur1 LINE L1 4981 5360 -526 4 1594 261 340 114 25 chr6 132329862 132330064 -17186973 - MLT1B LTR MaLR -4 386 167 4 1594 461 353 29 6 chr6 132330229 132330403 -17186634 + RLTR18B LTR ERVK 9 186 -326 4 1594 460 331 68 39 chr6 132330492 132330772 -17186265 + RLTR18B LTR ERVK 140 427 -85 4 1594 21 0 0 0 chr6 132331483 132331504 -17185533 + AT_rich Low_complexity Low_complexity 1 21 0 4 1594 2672 191 45 41 chr6 132331953 132332593 -17184444 - RMER6A LTR ERVK 0 756 114 4 1594 4623 173 35 10 chr6 132334967 132335797 -17181240 - Lx2 LINE L1 -51 6946 6096 4 1594 744 301 92 42 chr6 132336044 132336380 -17180657 - Lx2B LINE L1 -5 6995 6643 4 1594 198 0 0 0 chr6 132336667 132336689 -17180348 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4 1594 728 249 43 10 chr6 132336788 132336995 -17180042 - Lx3B LINE L1 -3 6970 6757 4 1594 783 193 28 0 chr6 132336993 132337138 -17179899 - Lx3B LINE L1 -340 6633 6485 4 1594 747 145 42 28 chr6 132337135 132337277 -17179760 - L1_Mur1 LINE L1 -438 5448 5305 4 1594 1508 177 43 71 chr6 132337277 132337673 -17179364 + L1_Mur1 LINE L1 4982 5366 -520 4 1594 758 276 36 98 chr6 132339398 132339756 -17177281 + RLTR9A LTR ERVK 1 336 -32 4 1594 255 61 0 0 chr6 132340121 132340154 -17176883 + (AATAG)n Simple_repeat Simple_repeat 3 35 0 4 1594 441 0 0 0 chr6 132340206 132340255 -17176782 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1594 2727 199 45 55 chr6 132340341 132340404 -17176633 + ETnERV2-int LTR ERVK 1158 1226 -6180 4 1594 7091 49 1 0 chr6 132340404 132341258 -17175779 - RLTR13A LTR ERVK 0 855 1 4 1594 2727 199 45 55 chr6 132341258 132341987 -17175050 + ETnERV2-int LTR ERVK 1227 1942 -5464 4 1594 248 304 69 104 chr6 132342080 132342282 -17174755 + B3 SINE B2 1 195 0 4 1594 14789 204 41 34 chr6 132342669 132347480 -17169557 - L1_Mus2 LINE L1 -4 6562 1714 4 1594 434 318 37 68 chr6 132347483 132347645 -17169392 - RLTR31_Mur LTR ERVK -6 547 391 4 1594 386 350 42 74 chr6 132347658 132347970 -17169067 - RLTR17 LTR ERVK -266 426 125 4 1594 2230 192 25 5 chr6 132348016 132348709 -17168328 - L1VL4 LINE L1 -2193 1366 659 4 1594 2404 49 13 0 chr6 132348728 132349032 -17168005 - L1Md_T LINE L1 0 6582 6275 4 1594 2167 54 4 0 chr6 132349032 132349310 -17167727 - ORR1A1 LTR MaLR -4 342 64 4 1594 806 120 15 0 chr6 132349321 132349454 -17167583 + (GAAA)n Simple_repeat Simple_repeat 1 135 0 4 1594 507 336 42 24 chr6 132349468 132349755 -17167282 - Lx6 LINE L1 -1232 6228 5937 4 1594 468 153 0 0 chr6 132349850 132349935 -17167102 + GA-rich Low_complexity Low_complexity 4 88 0 4 1594 27 29 0 0 chr6 132350124 132350158 -17166879 + AT_rich Low_complexity Low_complexity 1 34 0 4 1594 316 38 37 19 chr6 132351324 132351378 -17165659 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 4 1594 23 54 0 0 chr6 132352100 132352137 -17164900 + AT_rich Low_complexity Low_complexity 1 37 0 4 1594 1060 314 64 5 chr6 132352403 132352807 -17164230 + Lx7 LINE L1 6888 7315 -381 4 1594 4563 147 102 5 chr6 132352808 132353633 -17163404 + L1_Mus2 LINE L1 5660 6564 -2 4 1594 639 108 0 0 chr6 132353879 132353990 -17163047 + (GA)n Simple_repeat Simple_repeat 2 112 0 4 1594 232 327 60 79 chr6 132354043 132354259 -17162778 + RLTR18B LTR ERVK 32 243 -373 4 1594 213 211 52 17 chr6 132354264 132354322 -17162715 - L3 LINE CR1 -88 4401 4342 4 1594 454 242 109 36 chr6 132354446 132354639 -17162398 + RLTR18B LTR ERVK 223 429 -83 4 1594 595 216 122 12 chr6 132354779 132354895 -17162142 + RLTR27 LTR ERVK 1 124 -185 4 1594 324 0 0 0 chr6 132354895 132354931 -17162106 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1594 595 216 122 12 chr6 132354931 132354978 -17162059 + RLTR27 LTR ERVK 125 181 -128 4 1594 1126 103 51 6 chr6 132355102 132355278 -17161759 + RLTR27 LTR ERVK 126 309 0 4 1594 274 152 0 0 chr6 132355310 132355356 -17161681 + RLTR10-int LTR ERVK 222 267 -7314 4 1594 658 243 46 41 chr6 132355388 132355585 -17161452 + RLTR10-int LTR ERVK 655 852 -1135 4 1594 2923 316 29 35 chr6 132355977 132357811 -17159226 + MMERVK10C-int LTR ERVK 3653 5476 -2105 4 1594 1315 239 44 33 chr6 132357902 132358398 -17158639 + MMERVK10C-int LTR ERVK 6995 7581 0 4 1594 1890 142 13 7 chr6 132358398 132358703 -17158334 + RLTR27 LTR ERVK 1 307 -2 4 1594 2768 213 14 6 chr6 132358715 132359368 -17157669 + L1_Mur2 LINE L1 2050 2707 -3170 4 1594 679 212 41 10 chr6 132359725 132359920 -17157117 - RLTR22_Mur LTR ERVK -1487 361 161 4 1594 1474 233 11 39 chr6 132359922 132360284 -17156753 - Lx2 LINE L1 0 6997 6646 4 1594 2735 243 71 47 chr6 132360294 132361325 -17155712 + MYSERV16_I-int LTR ERVK 500 1555 -771 4 1594 1722 201 3 31 chr6 132361372 132361731 -17155306 + BGLII_B LTR ERVK 15 363 -78 4 1594 458 155 107 0 chr6 132362264 132362348 -17154689 + BGLII_B LTR ERVK 349 441 0 4 1594 312 83 0 0 chr6 132363333 132363381 -17153656 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1594 22 0 0 0 chr6 132363886 132363908 -17153129 + AT_rich Low_complexity Low_complexity 1 22 0 4 1594 182 259 18 18 chr6 132364471 132364526 -17152511 + L4 LINE RTE 204 258 -1771 4 1594 1145 252 20 81 chr6 132364690 132365035 -17152002 - ORR1A4 LTR MaLR -5 324 1 4 1594 1900 212 51 84 chr6 132365035 132365490 -17151547 - ORR1A4-int LTR MaLR 0 1509 1074 4 1594 2285 75 119 11 chr6 132365490 132365842 -17151195 + RLTR10 LTR ERVK 1 390 0 4 1594 1900 221 32 56 chr6 132365842 132366010 -17151027 - ORR1A4-int LTR MaLR -436 1073 981 4 1594 198 0 0 0 chr6 132366059 132366081 -17150956 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1594 261 0 0 0 chr6 132366352 132366381 -17150656 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1594 17647 95 16 3 chr6 132367513 132370742 -17146295 - L1Md_F2 LINE L1 0 6582 3307 4 1594 6994 100 3 8 chr6 132370754 132372678 -17144359 - L1Md_F2 LINE L1 -3604 2279 366 4 1594 4406 141 53 24 chr6 132372863 132373653 -17143384 + L1Md_F2 LINE L1 413 1225 -5391 4 1594 30374 114 11 3 chr6 132373624 132374542 -17142495 + L1Md_F2 LINE L1 1158 2075 -3808 4 1594 699 12 0 0 chr6 132374542 132374622 -17142415 + (GAA)n Simple_repeat Simple_repeat 2 81 0 4 1594 30374 104 11 2 chr6 132374622 132378564 -17138473 + L1Md_F2 LINE L1 2076 6059 -523 4 1594 3667 34 94 105 chr6 132378565 132379158 -17137879 - RLTR6_Mm LTR ERV1 -67 587 1 4 1594 3640 103 12 4 chr6 132379160 132379676 -17137361 + L1Md_F2 LINE L1 6062 6581 -1 4 1594 542 157 21 210 chr6 132379880 132380066 -17136971 + URR1B DNA MER1_type 66 216 -9 4 1594 1010 109 0 0 chr6 132380558 132380695 -17136342 + B1_Mus2 SINE Alu 1 137 -10 4 1594 351 0 0 0 chr6 132380695 132380734 -17136303 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1594 225 0 0 0 chr6 132380735 132380760 -17136277 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 4 1594 247 317 7 80 chr6 132380813 132380964 -17136073 - MTC LTR MaLR -281 140 1 4 1594 561 101 0 0 chr6 132381469 132381548 -17135489 - BC1_Mm scRNA scRNA -69 83 5 4 1594 233 264 57 0 chr6 132381512 132381565 -17135472 - ZP3AR Satellite Satellite -130 82 27 4 1594 348 119 0 0 chr6 132382516 132382575 -17134462 + (TCTG)n Simple_repeat Simple_repeat 4 62 0 4 199 6045 78 0 0 chr6 132382623 132383433 -17133604 - L1_Mm LINE L1 -488 5395 4586 4 1595 447 82 12 12 chr6 132383435 132383521 -17133516 + L1Md_F2 LINE L1 6493 6578 -4 4 1595 481 291 100 5 chr6 132383652 132383842 -17133195 + B3 SINE B2 9 216 0 4 1595 939 137 0 0 chr6 132384028 132384174 -17132863 + B1_Mus1 SINE Alu 2 147 -1 4 1595 272 63 16 126 chr6 132384188 132384315 -17132722 + A-rich Low_complexity Low_complexity 2 114 0 4 1595 671 280 17 0 chr6 132384463 132384638 -17132399 - Lx4B LINE L1 -108 6950 6773 4 1595 1070 235 42 35 chr6 132384777 132385182 -17131855 + RMER17C LTR ERVK 1 408 -2 4 1595 369 109 0 0 chr6 132385270 132385325 -17131712 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1595 2267 312 77 39 chr6 132385521 132386772 -17130265 + RMER1A Other Other 6 1014 -16 4 1595 1399 264 55 40 chr6 132386784 132387349 -17129688 + RLTR22_Mur LTR ERVK 1074 1610 -238 4 1595 258 116 0 0 chr6 132388245 132388288 -17128749 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1595 319 302 17 178 chr6 132389452 132389682 -17127355 - L1MDb LINE L1 -5668 741 549 4 1595 215 389 92 9 chr6 132391006 132391115 -17125922 + RSINE1 SINE B4 3 120 -45 4 1595 22 35 0 0 chr6 132391198 132391227 -17125810 + AT_rich Low_complexity Low_complexity 1 29 0 4 1595 1149 102 17 0 chr6 132391937 132392113 -17124924 - L1_Mus1 LINE L1 -205 6362 6184 4 1595 974 196 0 0 chr6 132392115 132392304 -17124733 + L1_Mus1 LINE L1 6379 6567 0 4 1595 676 137 13 19 chr6 132393280 132393436 -17123601 + CT-rich Low_complexity Low_complexity 2 156 0 4 1595 362 290 35 28 chr6 132393456 132393598 -17123439 + B1_Mur3 SINE Alu 1 143 -6 4 1595 260 330 24 48 chr6 132394847 132395057 -17121980 - L1P5 LINE L1 -619 5537 5333 4 1595 1616 270 95 22 chr6 132395209 132395765 -17121272 + Lx7 LINE L1 6742 7338 -358 4 1595 6417 10 4 8 chr6 132395915 132396692 -17120345 - L1Md_T LINE L1 0 6582 5851 4 1595 4634 9 0 0 chr6 132396692 132397224 -17119813 + L1_Mm LINE L1 3688 4219 -1664 4 1595 1228 0 0 0 chr6 132397223 132397360 -17119677 - L1Md_T LINE L1 -720 5862 5726 4 1595 373 319 41 35 chr6 132397360 132397532 -17119505 + RLTR18 LTR ERVK 1 173 -443 4 1595 300 133 0 0 chr6 132397646 132397704 -17119333 + L1_Mus2 LINE L1 6515 6576 -6 4 1595 2006 31 145 0 chr6 132397784 132398039 -17118998 - RLTR10B LTR ERVK 0 292 1 4 1595 1852 56 0 4 chr6 132398040 132398272 -17118765 - MMERVK10C-int LTR ERVK -4 7577 7347 4 1595 1067 67 8 0 chr6 132398272 132398406 -17118631 - MMERVK10C-int LTR ERVK -2015 5566 5432 4 1595 348 60 100 0 chr6 132398388 132398438 -17118599 - MMERVK10C-int LTR ERVK -7305 276 222 4 1595 242 191 0 0 chr6 132398438 132398480 -17118557 - RLTR27 LTR ERVK -37 272 231 4 1595 1457 61 0 0 chr6 132398480 132398660 -17118377 - MMERVK10C-int LTR ERVK -7401 180 1 4 1595 2237 26 86 0 chr6 132398660 132398929 -17118108 - RLTR10B LTR ERVK 0 292 1 4 1595 286 292 83 15 chr6 132398929 132399061 -17117976 + RLTR18B LTR ERVK 276 416 -96 4 1595 2859 185 42 38 chr6 132400247 132400883 -17116154 - RMER6A LTR ERVK -4 752 114 4 1595 486 0 0 0 chr6 132401378 132401432 -17115605 + (T)n Simple_repeat Simple_repeat 1 54 0 4 1595 231 114 0 0 chr6 132401603 132401638 -17115399 + (TTC)n Simple_repeat Simple_repeat 2 36 0 4 1595 386 377 73 16 chr6 132401683 132401931 -17115106 - B4A SINE B4 -28 264 3 5 1595 21 36 0 0 chr6 132402035 132402063 -17114974 + AT_rich Low_complexity Low_complexity 1 28 0 5 1595 22 56 0 0 chr6 132402093 132402129 -17114908 + AT_rich Low_complexity Low_complexity 1 36 0 5 1595 1016 129 0 0 chr6 132402466 132402613 -17114424 - B1_Mus1 SINE Alu 0 148 2 5 1595 767 225 17 11 chr6 132402694 132402874 -17114163 - RLTR28B LTR ERVL -234 247 67 5 1595 298 32 44 88 chr6 132402876 132402944 -17114093 - Lx3C LINE L1 -52 6924 6860 5 1595 4873 151 31 12 chr6 132403200 132404030 -17113007 - Lx2 LINE L1 -54 6943 6098 5 1595 801 282 81 42 chr6 132404443 132404776 -17112261 - Lx2B LINE L1 -5 6995 6650 5 1595 199 114 0 43 chr6 132405062 132405108 -17111929 + T-rich Low_complexity Low_complexity 1 44 0 5 1595 1694 10 0 0 chr6 132405205 132405411 -17111626 + RLTRETN_Mm LTR ERVK 1 206 -116 5 1595 16457 92 20 18 chr6 132405426 132410073 -17106964 + ETnERV2-int LTR ERVK 1645 7299 -107 5 1595 2059 73 28 16 chr6 132410073 132410391 -17106646 + RLTRETN_Mm LTR ERVK 1 322 0 5 1595 885 219 21 11 chr6 132410408 132410597 -17106440 - Lx3B LINE L1 -30 6943 6753 5 1595 878 181 0 0 chr6 132410591 132410740 -17106297 - Lx3B LINE L1 -340 6633 6485 5 1595 781 177 14 0 chr6 132410737 132410878 -17106159 - L1_Mur1 LINE L1 -438 5448 5306 5 1595 1461 163 40 140 chr6 132410878 132411307 -17105730 + L1_Mur1 LINE L1 4981 5366 -520 5 1595 832 271 67 83 chr6 132412992 132413366 -17103671 + RLTR9A LTR ERVK 1 368 0 5 1595 912 87 0 0 chr6 132413697 132413824 -17103213 + (GAATG)n Simple_repeat Simple_repeat 3 129 0 5 1595 775 28 19 0 chr6 132413871 132413977 -17103060 + (GA)n Simple_repeat Simple_repeat 1 108 0 5 1595 3448 171 40 43 chr6 132413977 132414872 -17102165 + ETnERV2-int LTR ERVK 1158 1942 -5464 5 1595 186 103 0 0 chr6 132414874 132414903 -17102134 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1595 303 358 19 45 chr6 132414962 132415117 -17101920 + B3 SINE B2 1 151 -65 5 1595 15706 110 8 70 chr6 132415560 132416932 -17100105 - L1_Mus2 LINE L1 0 6566 5296 5 1595 934 136 0 20 chr6 132416932 132417082 -17099955 - B1_Mus2 SINE Alu 0 147 1 5 1595 15706 152 10 58 chr6 132417082 132418085 -17098952 - L1_Mus2 LINE L1 -588 5295 4288 5 1595 4197 84 0 9 chr6 132418085 132418658 -17098379 - L1Md_F2 LINE L1 -13 6569 6002 5 1595 15706 152 10 58 chr6 132418658 132418735 -17098302 - L1_Mus2 LINE L1 -1596 4287 4205 5 1595 441 0 0 0 chr6 132418735 132418784 -17098253 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1595 15706 152 10 58 chr6 132418784 132420234 -17096803 - L1_Mus2 LINE L1 -1679 4204 2885 5 1595 2534 156 12 88 chr6 132420234 132420816 -17096221 + RMER16-int LTR ERVK 2741 3278 -2128 5 1595 3288 136 48 26 chr6 132420819 132421533 -17095504 + RLTR13D4 LTR ERVK 1 1031 -2 5 1595 2653 131 87 52 chr6 132421544 132421999 -17095038 + RMER16-int LTR ERVK 3307 3786 -1620 5 1595 567 105 28 19 chr6 132421999 132422106 -17094931 - L1Md_F2 LINE L1 0 6582 6475 5 1595 2653 196 35 31 chr6 132422106 132422355 -17094682 + RMER16-int LTR ERVK 3787 3866 -1540 5 1595 23 0 0 0 chr6 132422883 132422906 -17094131 + AT_rich Low_complexity Low_complexity 1 23 0 5 1595 853 198 55 215 chr6 132422915 132423352 -17093685 + RLTR9A LTR ERVK 2 368 0 5 1595 25 0 0 0 chr6 132424082 132424107 -17092930 + AT_rich Low_complexity Low_complexity 1 25 0 5 1595 1968 163 17 61 chr6 132424117 132424529 -17092508 - Lx3B LINE L1 -5 6968 6575 5 1595 233 219 27 14 chr6 132424958 132425032 -17092005 + T-rich Low_complexity Low_complexity 1 75 0 5 1595 185 140 0 23 chr6 132425849 132425893 -17091144 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 5 1595 1149 90 0 0 chr6 132426125 132426302 -17090735 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 5 1595 324 370 147 48 chr6 132426373 132426748 -17090289 - MTE-int LTR MaLR -453 1127 716 5 1595 1038 96 0 14 chr6 132426867 132427015 -17090022 - B1_Mus1 SINE Alu -1 147 2 5 1595 411 367 107 37 chr6 132427052 132427406 -17089631 - MTE-int LTR MaLR -1096 484 106 5 1595 311 200 0 0 chr6 132427453 132427508 -17089529 - 4.5SRNA scRNA scRNA -2 92 38 5 1595 3461 253 52 14 chr6 132427508 132428354 -17088683 + Lx5 LINE L1 6170 7047 -3 5 1595 566 252 91 0 chr6 132429107 132429250 -17087787 + RMER21B LTR ERV1 299 454 -388 5 1595 225 346 63 73 chr6 132429534 132429740 -17087297 - MTEa LTR MaLR -152 227 24 5 1595 197 146 0 20 chr6 132429769 132429818 -17087219 + T-rich Low_complexity Low_complexity 3 50 0 5 1595 1436 34 6 0 chr6 132429827 132430005 -17087032 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 1595 637 45 22 0 chr6 132430344 132430433 -17086604 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 5 1595 14723 59 6 3 chr6 132431283 132433852 -17083185 - L1Md_F2 LINE L1 -12 6570 3997 5 1595 2109 224 137 23 chr6 132433853 132434512 -17082525 - RLTR40 LTR ERVK -83 734 1 5 1595 21 0 0 0 chr6 132434642 132434663 -17082374 + AT_rich Low_complexity Low_complexity 1 21 0 5 1595 218 132 0 19 chr6 132435182 132435236 -17081801 + CT-rich Low_complexity Low_complexity 2 54 0 5 1595 1304 251 151 35 chr6 132435845 132436328 -17080709 + RMER2 LTR ERV1 1 539 -28 5 1595 261 0 0 0 chr6 132436700 132436729 -17080308 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1595 440 164 9 0 chr6 132437197 132437307 -17079730 + GA-rich Low_complexity Low_complexity 4 114 0 5 1595 380 214 14 0 chr6 132437327 132437397 -17079640 + RLTR42-int LTR ERVK 1682 1752 -3770 5 1595 673 156 104 0 chr6 132437487 132437622 -17079415 + URR1A DNA MER1_type 78 226 0 5 1595 264 274 26 40 chr6 132438183 132438259 -17078778 - B4 SINE B4 -216 76 2 5 1595 567 136 0 0 chr6 132438466 132438554 -17078483 + URR1B DNA MER1_type 126 213 -12 5 1595 322 176 0 0 chr6 132438553 132438604 -17078433 - MTEa LTR MaLR -327 52 2 5 1595 262 0 53 0 chr6 132439408 132439446 -17077591 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1595 852 231 48 5 chr6 132439627 132439836 -17077201 - URR1B DNA MER1_type 0 225 8 5 1595 318 115 0 0 chr6 132441732 132441793 -17075244 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1595 360 0 0 0 chr6 132441793 132441833 -17075204 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1595 24 0 0 0 chr6 132442523 132442547 -17074490 + AT_rich Low_complexity Low_complexity 1 24 0 5 1595 24 0 0 0 chr6 132442737 132442761 -17074276 + AT_rich Low_complexity Low_complexity 1 24 0 5 1595 205 176 0 0 chr6 132442972 132443006 -17074031 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 5 1595 258 32 0 0 chr6 132443063 132443094 -17073943 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1595 29 0 0 0 chr6 132443340 132443369 -17073668 + AT_rich Low_complexity Low_complexity 1 29 0 5 1595 513 69 23 11 chr6 132443954 132444042 -17072995 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 1595 296 275 14 14 chr6 132444451 132444591 -17072446 + (TA)n Simple_repeat Simple_repeat 2 141 0 5 1595 643 217 35 0 chr6 132444766 132444909 -17072128 - RMER19B LTR ERVK -12 890 743 5 1595 2915 14 5 129 chr6 132445396 132445815 -17071222 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1595 51813 32 16 4 chr6 132445817 132452269 -17064768 + IAPEz-int LTR ERVK 3 6481 0 5 1595 2915 14 5 129 chr6 132452269 132452688 -17064349 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1595 1646 267 113 47 chr6 132452737 132453247 -17063790 - RMER19B LTR ERVK -156 746 183 5 1595 2208 90 132 11 chr6 132453247 132453595 -17063442 + RLTR10 LTR ERVK 1 390 0 5 1595 1646 267 113 47 chr6 132453595 132453784 -17063253 - RMER19B LTR ERVK -720 182 1 5 1595 600 285 55 29 chr6 132454259 132454570 -17062467 + L1_Rod LINE L1 5520 5838 -9 5 1595 217 268 10 20 chr6 132455527 132455626 -17061411 + (TA)n Simple_repeat Simple_repeat 2 99 0 5 1595 1231 43 29 0 chr6 132458345 132458553 -17058484 + (TAGA)n Simple_repeat Simple_repeat 1 213 0 5 1595 661 266 129 27 chr6 132460846 132460918 -17056119 + RLTR28 LTR ERVL 1 90 -434 5 1595 513 27 26 13 chr6 132460918 132460994 -17056043 + (TTATA)n Simple_repeat Simple_repeat 4 80 0 5 1595 661 266 129 27 chr6 132460994 132461145 -17055892 + RLTR28 LTR ERVL 91 246 -278 5 1595 2809 138 25 27 chr6 132461280 132461769 -17055268 - RMER16 LTR ERVK 0 533 1 5 1595 6302 117 15 7 chr6 132461769 132463408 -17053629 + Lx3_Mus LINE L1 4892 6536 -473 5 1595 1071 340 98 29 chr6 132463646 132464534 -17052503 + Lx8 LINE L1 6385 7333 -140 5 1595 25 31 0 0 chr6 132464714 132464746 -17052291 + AT_rich Low_complexity Low_complexity 1 32 0 5 1595 1184 204 93 45 chr6 132464827 132465202 -17051835 + RLTR9C LTR ERVK 1 393 0 5 1595 4119 215 70 81 chr6 132465204 132469522 -17047515 + ETnERV2-int LTR ERVK 2 6489 -917 5 1595 625 289 17 14 chr6 132469493 132469785 -17047252 + ETnERV2-int LTR ERVK 7518 7748 -469 5 1595 4766 134 10 0 chr6 132469837 132470540 -17046497 + ETnERV2-int LTR ERVK 6494 7203 -203 5 1595 282 104 21 0 chr6 132470540 132470588 -17046449 + RLTR13B1 LTR ERVK 153 201 -692 5 1595 3247 191 20 20 chr6 132470638 132471339 -17045698 + Lx2 LINE L1 6254 6954 -43 5 1595 1715 103 72 23 chr6 132471341 132471648 -17045389 - RLTRETN_Mm LTR ERVK 0 322 1 5 1595 11602 84 31 23 chr6 132471648 132473913 -17043124 - ETnERV-int LTR ERVK -282 7124 3219 5 1595 14024 169 24 16 chr6 132473896 132477942 -17039095 - ETnERV-int LTR ERVK -2660 4746 1 5 1595 1853 109 31 22 chr6 132477942 132478261 -17038776 - RLTRETN_Mm LTR ERVK 0 322 1 5 1595 235 96 0 37 chr6 132478261 132478315 -17038722 + Lx2 LINE L1 6952 6997 0 5 1595 1967 143 3 0 chr6 132478323 132478624 -17038413 + MTB LTR MaLR 52 353 -47 5 1595 932 219 31 21 chr6 132478856 132479177 -17037860 - RLTR28B LTR ERVL -27 454 102 5 1595 454 70 39 20 chr6 132479181 132479283 -17037754 + (CAAAA)n Simple_repeat Simple_repeat 4 107 0 5 1595 10101 142 27 25 chr6 132479467 132481951 -17035086 + L1VL4 LINE L1 314 2803 -756 5 1595 23407 102 107 4 chr6 132481957 132486661 -17030376 + L1Md_F2 LINE L1 394 5585 -298 5 1595 6845 109 1 15 chr6 132486662 132487669 -17029368 + L1Md_F2 LINE L1 5587 6579 -3 5 1595 2510 60 122 3 chr6 132487671 132488039 -17028998 + L1Md_F2 LINE L1 5174 5585 -298 5 1595 7138 86 2 14 chr6 132488040 132489032 -17028005 + L1Md_F2 LINE L1 5587 6566 -16 5 1595 6543 184 5 12 chr6 132489044 132490422 -17026615 + L1_Mur2 LINE L1 3144 4511 -1366 5 1595 6286 144 5 3 chr6 132490422 132491578 -17025459 + L1_Mus4 LINE L1 5472 6629 -7 5 1595 38 0 0 0 chr6 132492163 132492201 -17024836 + AT_rich Low_complexity Low_complexity 1 38 0 5 1595 463 31 31 0 chr6 132493927 132493992 -17023045 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 5 1595 4507 53 2 2 chr6 132494927 132495493 -17021544 + L1Md_F2 LINE L1 6016 6581 -1 5 1595 216 0 0 0 chr6 132495854 132495878 -17021159 + (TTTTTA)n Simple_repeat Simple_repeat 5 28 0 5 1595 543 16 0 0 chr6 132496703 132496767 -17020270 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1595 1476 262 59 43 chr6 132498844 132499286 -17017751 - RLTR21 LTR ERVK -3 1569 1121 5 1595 381 93 0 0 chr6 132499291 132499345 -17017692 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1595 2111 225 41 24 chr6 132499379 132499403 -17017634 - RLTR21 LTR ERVK -295 1277 1254 5 1595 180 111 0 0 chr6 132499403 132499430 -17017607 + (CATA)n Simple_repeat Simple_repeat 4 30 0 5 1595 2111 225 41 24 chr6 132499430 132499987 -17017050 - RLTR21 LTR ERVK -319 1253 686 5 1595 3246 209 6 9 chr6 132500008 132500646 -17016391 - RLTR21 LTR ERVK -936 636 1 1 1595 254 163 47 0 chr6 132501019 132501052 -17015985 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1595 297 0 0 0 chr6 132501052 132501085 -17015952 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1595 254 163 47 0 chr6 132501085 132501137 -17015900 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1595 2588 127 9 16 chr6 132501137 132501560 -17015477 + BGLII LTR ERVK 1 420 -1 5 1595 2222 152 31 0 chr6 132501637 132502019 -17015018 - L1_Mus3 LINE L1 -8 6630 6237 6 1595 6089 155 10 31 chr6 132502027 132503203 -17013834 - L1_Mm LINE L1 -1063 4820 3669 7 1595 2414 113 0 20 chr6 132503206 132503380 -17013657 + ORR1A1 LTR MaLR 1 174 -172 8 1595 2013 194 58 87 chr6 132503380 132503929 -17013108 - RMER16 LTR ERVK 0 533 1 9 1595 2414 113 0 20 chr6 132503929 132504107 -17012930 + ORR1A1 LTR MaLR 175 346 0 8 1595 1083 126 3 176 chr6 132504118 132504408 -17012629 - L1_Mm LINE L1 -2224 3659 3420 7 1595 26 0 0 0 chr6 132504416 132504442 -17012595 + AT_rich Low_complexity Low_complexity 1 26 0 1 1595 30 45 0 0 chr6 132504711 132504755 -17012282 + AT_rich Low_complexity Low_complexity 1 44 0 1 1595 336 178 0 0 chr6 132504829 132504936 -17012101 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1 1595 453 66 0 0 chr6 132504940 132505001 -17012036 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1595 983 113 0 7 chr6 132505176 132505319 -17011718 + B1_Mm SINE Alu 6 147 0 1 1595 2470 118 35 60 chr6 132506147 132506634 -17010403 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1595 26265 15 4 0 chr6 132506634 132509578 -17007459 - IAPEz-int LTR ERVK 0 6481 3525 1 1595 932 73 24 0 chr6 132509578 132509701 -17007336 - IAPEz-int LTR ERVK -2770 4910 4785 1 1595 1846 111 4 4 chr6 132509698 132509960 -17007077 - IAPEz-int LTR ERVK -5183 2497 2236 1 1595 442 66 0 32 chr6 132509949 132510012 -17007025 - IAPEz-int LTR ERVK -5062 1419 1359 1 1595 4967 19 3 0 chr6 132510044 132510626 -17006411 - IAPEz-int LTR ERVK -5890 591 8 1 1595 2470 118 35 60 chr6 132510626 132511113 -17005924 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1595 245 222 12 24 chr6 132511113 132511196 -17005841 + CT-rich Low_complexity Low_complexity 2 83 0 1 1595 453 264 42 28 chr6 132511874 132512018 -17005019 - RMER19B LTR ERVK -10 892 747 1 1595 1008 241 304 58 chr6 132512538 132512942 -17004095 - RMER19B LTR ERVK -154 748 237 1 1595 293 0 0 26 chr6 132512942 132512980 -17004057 + (TTG)n Simple_repeat Simple_repeat 3 39 0 1 1595 1008 225 54 9 chr6 132512980 132513147 -17003890 - RMER19B LTR ERVK -666 236 70 1 1595 446 211 19 0 chr6 132513165 132513269 -17003768 - RMER19B LTR ERVK -796 106 1 1 1596 198 191 0 0 chr6 132513918 132513965 -17003072 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1596 363 88 0 117 chr6 132514051 132514128 -17002909 + L1Md_F2 LINE L1 6515 6582 0 2 1596 557 98 0 12 chr6 132514999 132515082 -17001955 + 5S rRNA rRNA 10 91 -30 2 1596 381 43 0 0 chr6 132515346 132515393 -17001644 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1596 616 300 77 57 chr6 132515467 132515764 -17001273 - RMER19B LTR ERVK -599 303 1 2 1596 650 274 81 30 chr6 132516247 132516572 -17000465 + Lx7 LINE L1 5547 5923 -233 2 1596 498 327 130 11 chr6 132516767 132517036 -17000001 - Lx8 LINE L1 -77 7396 7096 2 1596 183 266 12 71 chr6 132519975 132520060 -16996977 - L2 LINE L2 -1543 1876 1797 2 1596 366 23 0 0 chr6 132520294 132520337 -16996700 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 1596 367 90 32 43 chr6 132520406 132520499 -16996538 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 2 1596 362 21 0 21 chr6 132522835 132522883 -16994154 + (TTA)n Simple_repeat Simple_repeat 2 48 0 3 1596 1818 202 27 31 chr6 132523309 132523722 -16993315 + RLTR28B LTR ERVL 44 454 -27 3 1596 1465 173 113 40 chr6 132523954 132524238 -16992799 - MTB LTR MaLR -47 353 42 3 1596 3429 183 34 5 chr6 132524238 132524895 -16992142 - Lx2 LINE L1 -8 6989 6314 3 1596 1465 173 113 40 chr6 132524895 132524911 -16992126 - MTB LTR MaLR -359 41 31 3 1596 7927 202 9 23 chr6 132524912 132526708 -16990329 - L1_Mur2 LINE L1 -930 4947 3177 3 1596 18867 125 146 19 chr6 132526697 132529699 -16987338 - L1Md_F2 LINE L1 -12 6570 3117 3 1596 229 129 145 0 chr6 132529699 132529761 -16987276 + Looper DNA PiggyBac 1378 1448 -110 3 1596 18867 125 146 19 chr6 132529761 132531307 -16985730 - L1Md_F2 LINE L1 -12 3116 1336 3 1596 1340 148 16 27 chr6 132531307 132531564 -16985473 + BGLII LTR ERVK 167 420 -1 3 1596 240 171 12 24 chr6 132531587 132531671 -16985366 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 3 1596 9877 125 132 3 chr6 132531693 132533666 -16983371 - L1_Mus3 LINE L1 -8 6630 4284 3 1596 303 49 0 0 chr6 132533666 132533707 -16983330 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 1596 9877 141 155 6 chr6 132533707 132534317 -16982720 - L1_Mus3 LINE L1 -1600 4283 3669 3 1596 2418 104 0 20 chr6 132534320 132534494 -16982543 + ORR1A1 LTR MaLR 1 174 -172 4 1596 1893 198 72 87 chr6 132534494 132535035 -16982002 - RMER16 LTR ERVK 0 533 1 4 1596 2418 104 0 20 chr6 132535035 132535213 -16981824 + ORR1A1 LTR MaLR 175 346 0 4 1596 1104 112 3 180 chr6 132535224 132535508 -16981529 - L1_Mus3 LINE L1 -2224 3659 3426 3 1596 204 67 0 0 chr6 132535509 132535539 -16981498 + (TTA)n Simple_repeat Simple_repeat 2 31 0 4 1596 30 45 0 0 chr6 132535811 132535855 -16981182 + AT_rich Low_complexity Low_complexity 1 44 0 4 1596 197 98 24 0 chr6 132535925 132535966 -16981071 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 4 1596 294 106 0 0 chr6 132535967 132536014 -16981023 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1596 1027 92 7 7 chr6 132536188 132536331 -16980706 + B1_Mm SINE Alu 5 147 0 4 1596 22 35 0 0 chr6 132536521 132536550 -16980487 + AT_rich Low_complexity Low_complexity 1 29 0 4 1596 235 320 8 8 chr6 132537603 132537729 -16979308 + (TA)n Simple_repeat Simple_repeat 2 127 0 4 1596 512 239 56 7 chr6 132537937 132538080 -16978957 - RMER19B LTR ERVK -12 890 741 5 1596 1048 294 132 60 chr6 132538598 132539004 -16978033 - RMER19B LTR ERVK -154 748 313 5 1596 212 0 0 35 chr6 132539004 132539033 -16978004 + (TTG)n Simple_repeat Simple_repeat 3 30 0 5 1596 1048 294 132 60 chr6 132539033 132539324 -16977713 - RMER19B LTR ERVK -590 312 2 5 1596 483 48 0 0 chr6 132539966 132540028 -16977009 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1596 362 75 14 56 chr6 132540134 132540205 -16976832 + L1Md_F2 LINE L1 6515 6582 0 5 1596 571 73 0 12 chr6 132541085 132541168 -16975869 + 5S rRNA rRNA 10 91 -30 5 1596 402 21 0 0 chr6 132541432 132541479 -16975558 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1596 630 295 74 60 chr6 132541554 132541853 -16975184 - RMER19B LTR ERVK -599 303 1 5 1596 590 263 99 43 chr6 132542336 132542681 -16974356 + Lx7 LINE L1 5547 5913 -1731 5 1596 449 328 126 18 chr6 132542784 132543125 -16973912 - Lx8 LINE L1 0 7473 7096 5 1596 252 0 0 0 chr6 132543542 132543570 -16973467 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1596 354 23 0 0 chr6 132546398 132546441 -16970596 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1596 558 0 0 0 chr6 132546441 132546502 -16970535 + (TA)n Simple_repeat Simple_repeat 2 63 0 6 1596 497 120 42 7 chr6 132546571 132546714 -16970323 + (TAGA)n Simple_repeat Simple_repeat 2 149 0 6 1596 11176 25 0 0 chr6 132547007 132549010 -16968027 - L1Md_A LINE L1 -1 6581 4578 6 1596 369 0 0 0 chr6 132551137 132551178 -16965859 + (TTA)n Simple_repeat Simple_repeat 2 42 0 6 1596 1826 200 27 27 chr6 132551606 132552017 -16965020 + RLTR28B LTR ERVL 44 454 -27 6 1596 1474 158 128 0 chr6 132552249 132552514 -16964523 - MTB LTR MaLR -47 353 55 6 1596 1802 180 57 8 chr6 132552522 132552891 -16964146 - Lx2 LINE L1 0 6997 6611 6 1596 200 351 0 18 chr6 132552895 132553063 -16963974 + CT-rich Low_complexity Low_complexity 3 167 0 6 1596 1755 174 14 6 chr6 132553074 132553400 -16963637 - Lx2 LINE L1 -386 6611 6026 6 1596 8104 198 12 23 chr6 132553400 132554906 -16962131 - L1_Mur2 LINE L1 -913 4964 3483 6 1596 347 56 19 0 chr6 132554906 132554960 -16962077 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 7 1596 8104 198 12 23 chr6 132554960 132555260 -16961777 - L1_Mur2 LINE L1 -2395 3482 3179 6 1596 15230 141 87 14 chr6 132555250 132558262 -16958775 - L1Md_F2 LINE L1 -12 6570 3108 7 1596 238 178 95 53 chr6 132558262 132558357 -16958680 + Looper DNA PiggyBac 1378 1476 -82 7 1596 15230 141 87 14 chr6 132558357 132560735 -16956302 - L1Md_F2 LINE L1 -12 3107 371 7 1596 1207 279 52 67 chr6 132561480 132561851 -16955186 + Lx8 LINE L1 6664 7046 -427 7 1596 532 296 7 14 chr6 132561851 132561995 -16955042 + B1_Mus2 SINE Alu 2 144 -3 7 1596 1207 279 52 67 chr6 132561995 132562068 -16954969 + Lx8 LINE L1 7047 7101 -372 7 1596 394 333 81 6 chr6 132562072 132562244 -16954793 + Lx9 LINE L1 6975 7159 -485 7 1596 2403 138 153 101 chr6 132562252 132562346 -16954691 + MT2B2 LTR ERVL 1 72 -512 7 1596 1138 204 39 0 chr6 132562346 132562577 -16954460 - Lx2 LINE L1 0 6997 6758 7 1596 2403 138 153 101 chr6 132562577 132563037 -16954000 + MT2B2 LTR ERVL 73 584 0 7 1596 299 376 0 39 chr6 132563232 132563362 -16953675 + RMER4A LTR ERVK 1 125 -341 7 1596 571 204 206 16 chr6 132563389 132563578 -16953459 - URR1A DNA MER1_type -1 225 1 7 1596 5191 119 1 13 chr6 132564226 132564571 -16952466 - L1_Mm LINE L1 -176 5707 5369 8 1596 1039 78 21 0 chr6 132564571 132564713 -16952324 - B1_Mm SINE Alu 0 147 3 8 1596 5191 119 1 13 chr6 132564713 132565155 -16951882 - L1_Mm LINE L1 -515 5368 4929 8 1596 17329 186 47 87 chr6 132565155 132570736 -16946301 - L1Md_T LINE L1 -949 5633 234 8 1596 2115 131 6 0 chr6 132570735 132571064 -16945973 - L1_Mm LINE L1 -1539 4344 4014 8 1596 837 158 47 6 chr6 132571064 132571236 -16945801 - MYSERV6-int LTR ERVK -2414 6545 6367 8 1596 240 285 0 25 chr6 132571237 132571307 -16945730 - B1_Mus1 SINE Alu -75 75 12 8 1596 211 167 0 45 chr6 132571295 132571339 -16945698 - B1_Mus1 SINE Alu -95 53 12 8 1596 1675 222 16 22 chr6 132571339 132571786 -16945251 - MYSERV6-int LTR ERVK -2671 6288 5845 8 1596 768 247 5 21 chr6 132571832 132572026 -16945011 - Lx4B LINE L1 0 7058 6868 8 1596 3847 185 73 19 chr6 132572034 132572832 -16944205 - MYSERV6-int LTR ERVK -3118 5841 5001 8 1596 1451 157 9 41 chr6 132572919 132573238 -16943799 - MYSERV6-int LTR ERVK -3940 5019 4711 8 1596 4199 177 34 49 chr6 132573282 132573463 -16943574 - MYSERV6-int LTR ERVK -4249 4710 4536 8 1596 4065 86 0 0 chr6 132573463 132573996 -16943041 + L1_Mus1 LINE L1 6031 6563 -4 8 1596 4199 177 34 49 chr6 132573996 132574729 -16942308 - MYSERV6-int LTR ERVK -4424 4535 3810 8 1596 183 42 0 0 chr6 132575622 132575646 -16941391 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1596 207 0 0 0 chr6 132576534 132576557 -16940480 + (TGG)n Simple_repeat Simple_repeat 2 24 0 9 1596 1079 42 7 0 chr6 132577752 132577894 -16939143 + B1_Mus1 SINE Alu 6 148 0 9 1596 236 38 36 54 chr6 132577896 132577952 -16939085 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 9 1596 438 311 24 61 chr6 132579946 132580198 -16936839 - MLT1B LTR MaLR -137 253 4 9 1596 693 0 0 0 chr6 132580387 132580464 -16936573 + (TC)n Simple_repeat Simple_repeat 2 78 0 9 1596 384 59 0 0 chr6 132580464 132580514 -16936523 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1596 26 30 0 0 chr6 132580927 132580960 -16936077 + AT_rich Low_complexity Low_complexity 1 33 0 9 1596 3931 114 23 2 chr6 132581384 132582028 -16935009 + MusHAL1 LINE L1 263 920 -1792 9 1596 330 292 0 0 chr6 132582172 132582261 -16934776 - PB1D10 SINE Alu -2 115 27 9 1596 21 57 0 0 chr6 132582957 132582992 -16934045 + AT_rich Low_complexity Low_complexity 1 35 0 9 1596 24 0 0 0 chr6 132583473 132583497 -16933540 + AT_rich Low_complexity Low_complexity 1 24 0 1 1596 286 304 38 6 chr6 132583762 132583921 -16933116 + L1M5 LINE L1 2740 2903 -3243 1 1596 3438 151 52 18 chr6 132583997 132584598 -16932439 + Lx2B LINE L1 6375 6995 -5 1 1596 21 0 0 0 chr6 132585110 132585131 -16931906 + AT_rich Low_complexity Low_complexity 1 21 0 1 1596 286 123 35 0 chr6 132585154 132585211 -16931826 + CT-rich Low_complexity Low_complexity 2 60 0 1 1596 8690 15 1 1 chr6 132585214 132586906 -16930131 - L1Md_A LINE L1 0 6582 4987 1 1596 40353 16 1 6 chr6 132586910 132593116 -16923921 - L1Md_A LINE L1 0 6582 412 1 1596 222 280 92 13 chr6 132593142 132593218 -16923819 - PB1D7 SINE Alu -21 99 18 1 1596 349 324 28 9 chr6 132594802 132594911 -16922126 + MLT1G1 LTR MaLR 104 214 -365 1 1596 487 245 19 0 chr6 132595658 132595764 -16921273 + MTEa LTR MaLR 267 374 0 1 1596 776 101 9 1 chr6 132595770 132595894 -16921143 - L1_Mur1 LINE L1 -973 5339 5190 1 1596 6914 98 32 28 chr6 132595900 132597029 -16920008 + Lx3_Mus LINE L1 5877 7009 0 1 1596 861 159 17 6 chr6 132597065 132597242 -16919795 + GA-rich Low_complexity Low_complexity 2 180 0 1 1596 1729 311 76 67 chr6 132597271 132598041 -16918996 + MTEa-int LTR MaLR 713 1417 -163 1 1596 254 254 0 17 chr6 132598042 132598102 -16918935 + Lx8 LINE L1 7187 7245 -228 1 1596 252 370 40 33 chr6 132598251 132598402 -16918635 + MTEa-int LTR MaLR 1422 1573 -7 1 1596 716 347 105 3 chr6 132598405 132598749 -16918288 + MTEa LTR MaLR 1 379 0 1 1596 282 241 9 61 chr6 132598917 132599032 -16918005 - MLT1A1 LTR MaLR -8 400 292 1 1596 241 315 96 0 chr6 132599788 132599861 -16917176 - ID4_ SINE ID 0 83 4 1 1596 27 29 0 0 chr6 132599978 132600012 -16917025 + AT_rich Low_complexity Low_complexity 1 34 0 1 1596 21 82 0 0 chr6 132600419 132600468 -16916569 + AT_rich Low_complexity Low_complexity 1 49 0 1 1596 504 0 0 0 chr6 132600731 132600787 -16916250 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1596 208 244 0 0 chr6 132600921 132600962 -16916075 + A-rich Low_complexity Low_complexity 4 44 0 1 1596 218 346 13 13 chr6 132600981 132601060 -16915977 - RSINE1 SINE B4 -85 80 2 1 1596 235 286 36 0 chr6 132601507 132601591 -16915446 + L1MEc LINE L1 272 358 -6042 1 1596 224 333 14 0 chr6 132602327 132602396 -16914641 + B3A SINE B2 1 70 -128 1 1596 300 281 121 22 chr6 132602396 132602578 -16914459 + L1MEc LINE L1 1334 1533 -4867 1 1596 1634 305 63 55 chr6 132602745 132603522 -16913515 + Lx9 LINE L1 6358 7140 -504 1 1596 24 0 0 0 chr6 132604054 132604078 -16912959 + AT_rich Low_complexity Low_complexity 1 24 0 1 1596 1563 213 61 0 chr6 132604368 132604697 -16912340 - Lx2B LINE L1 -309 6691 6343 1 1596 982 201 22 14 chr6 132604763 132604985 -16912052 + L1_Mur2 LINE L1 4777 5000 -877 1 1596 366 139 0 0 chr6 132605201 132605273 -16911764 + (GA)n Simple_repeat Simple_repeat 2 73 0 1 1596 213 274 0 0 chr6 132605693 132605744 -16911293 - B3A SINE B2 -59 139 89 1 1596 498 33 0 0 chr6 132606240 132606300 -16910737 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1596 1804 230 56 113 chr6 132608412 132609021 -16908016 + RMER19C LTR ERVK 1 574 -37 1 1596 2799 137 20 2 chr6 132609033 132609480 -16907557 + Lx3A LINE L1 6439 6893 -88 1 1596 243 0 0 0 chr6 132609810 132609837 -16907200 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1596 459 0 0 0 chr6 132609837 132609887 -16907150 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1596 1833 147 22 16 chr6 132609949 132610267 -16906770 - Lx LINE L1 -10 6644 6325 1 1596 2354 130 28 3 chr6 132610269 132610625 -16906412 - Lx LINE L1 -211 6443 6079 1 1596 1889 223 80 61 chr6 132610625 132611198 -16905839 - RLTR31A_Mm LTR ERVK 0 584 1 1 1596 1151 88 0 0 chr6 132611198 132611357 -16905680 - Lx LINE L1 -570 6084 5926 1 1596 488 236 24 8 chr6 132611355 132611479 -16905558 - Lx9 LINE L1 -509 7135 7010 1 1596 790 329 38 146 chr6 132611631 132612317 -16904720 - RLTR18 LTR ERVK 0 616 5 1 1596 268 287 18 82 chr6 132613170 132613219 -16903818 - B3 SINE B2 -1 215 174 1 1596 3633 195 23 9 chr6 132613219 132613965 -16903072 + RMER6A LTR ERVK 1 756 0 1 1596 268 287 18 82 chr6 132613965 132614025 -16903012 - B3 SINE B2 -43 173 113 1 1596 5387 142 15 11 chr6 132614025 132614936 -16902101 + Lx3A LINE L1 6067 6981 0 1 1596 491 112 12 0 chr6 132614936 132615016 -16902021 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1596 749 11 0 11 chr6 132615032 132615123 -16901914 + (GGAAA)n Simple_repeat Simple_repeat 1 90 0 1 1596 328 333 23 0 chr6 132615150 132615237 -16901800 - B3A SINE B2 -104 94 6 1 1596 382 341 0 0 chr6 132615262 132615400 -16901637 + RMER15-int LTR ERVL 941 1078 -3921 1 1596 255 376 49 27 chr6 132615601 132615784 -16901253 + RMER15-int LTR ERVL 1982 2168 -2831 1 1596 2400 68 0 58 chr6 132616050 132616392 -16900645 - L1_Mus2 LINE L1 -1 6565 6244 1 1596 542 320 40 40 chr6 132616639 132617010 -16900027 + RMER15-int LTR ERVL 4514 4884 -115 1 1596 237 167 0 18 chr6 132617186 132617241 -16899796 + (CAA)n Simple_repeat Simple_repeat 2 55 0 1 1596 2922 260 103 11 chr6 132617935 132618985 -16898052 - Lx2B LINE L1 -1 6999 5854 1 1596 7706 178 16 13 chr6 132618986 132620627 -16896410 + L1_Mur2 LINE L1 3321 4967 -910 1 1596 3204 56 5 2 chr6 132620725 132621120 -16895917 - MTA_Mm LTR MaLR 0 396 1 1 1596 2635 186 17 101 chr6 132621192 132621922 -16895115 - MT2B LTR ERVL -6 595 1 1 1596 1168 69 0 0 chr6 132622176 132622321 -16894716 + B1_Mus2 SINE Alu 3 147 0 1 1596 797 274 4 4 chr6 132622335 132622562 -16894475 + MYSERV16_I-int LTR ERVK 72 298 -2028 1 1596 31 44 0 0 chr6 132622563 132622608 -16894429 + AT_rich Low_complexity Low_complexity 1 45 0 1 1596 627 250 69 63 chr6 132622638 132622941 -16894096 + MYSERV16_I-int LTR ERVK 294 598 -1728 1 1596 907 224 55 18 chr6 132622945 132623218 -16893819 + MYSERV-int LTR ERVK 6207 6489 -61 1 1596 1284 236 62 35 chr6 132623276 132623614 -16893423 + RLTR11A2 LTR ERVK 3 349 -178 1 1596 246 196 143 61 chr6 132623696 132623794 -16893243 - RNLTR23 LTR ERVK -50 592 487 1 1596 890 188 71 6 chr6 132623941 132624123 -16892914 + RLTR11A2 LTR ERVK 334 527 0 1 1596 295 250 13 13 chr6 132624123 132624200 -16892837 - ORR1D1 LTR MaLR -224 154 78 1 1596 198 0 0 0 chr6 132624200 132624222 -16892815 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1596 956 76 68 8 chr6 132624232 132624364 -16892673 - B1_Mus1 SINE Alu -6 142 3 1 1596 495 210 10 0 chr6 132624366 132624466 -16892571 - ORR1D1 LTR MaLR -273 101 1 1 1596 226 358 0 0 chr6 132624656 132624723 -16892314 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 1 1596 592 306 38 66 chr6 132624919 132625132 -16891905 - B4 SINE B4 -4 288 82 1 1596 5151 226 51 15 chr6 132625361 132626215 -16890822 - Lx3C LINE L1 -2 6974 6100 1 1596 360 0 0 0 chr6 132626215 132626255 -16890782 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1596 396 0 0 0 chr6 132626255 132626298 -16890739 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1596 5151 226 51 15 chr6 132626298 132626782 -16890255 - Lx3C LINE L1 -877 6099 5588 1 1596 17408 125 7 30 chr6 132626791 132630083 -16886954 + L1VL1 LINE L1 1015 4231 -1652 1 1596 343 301 42 58 chr6 132630083 132630117 -16886920 - B4A SINE B4 -89 203 86 1 1596 475 209 47 0 chr6 132630117 132630203 -16886834 - B1_Mus2 SINE Alu -57 90 1 1 1596 604 212 8 15 chr6 132630203 132630335 -16886702 + RMER19C LTR ERVK 469 599 -12 1 1596 720 35 0 0 chr6 132630436 132630523 -16886514 + (TA)n Simple_repeat Simple_repeat 1 87 0 1 1596 625 308 14 0 chr6 132630805 132630948 -16886089 + B1_Mur3 SINE Alu 2 146 -3 1 1596 360 64 0 0 chr6 132631576 132631623 -16885414 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1596 1673 171 55 148 chr6 132631886 132632485 -16884552 + RMER12 LTR ERVK 225 770 -552 1 1596 684 54 0 0 chr6 132632485 132632578 -16884459 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1596 517 200 79 29 chr6 132632578 132632609 -16884428 + RMER12 LTR ERVK 1201 1236 -168 1 1596 4122 141 20 51 chr6 132632609 132634053 -16882984 + L1VL1 LINE L1 194 1583 -2115 1 1596 564 307 42 19 chr6 132634066 132634282 -16882755 - RLTR45 LTR ERVK -1 481 261 1 1596 1510 208 29 83 chr6 132634607 132635026 -16882011 - RNERVK23-int LTR ERVK -364 7042 6647 1 1596 900 285 30 13 chr6 132635097 132635566 -16881471 - RNERVK23-int LTR ERVK -630 6614 6337 1 1596 411 297 25 58 chr6 132635437 132635762 -16881275 - RLTR6-int LTR ERV1 -308 7470 7157 1 1596 633 328 0 4 chr6 132636007 132636252 -16880785 - RLTR45-int LTR ERVK -5668 1576 1333 1 1596 387 286 21 21 chr6 132636668 132636811 -16880226 - RNERVK23-int LTR ERVK -1880 6337 6195 1 1596 1827 323 79 67 chr6 132637240 132638026 -16879011 - RNERVK23-int LTR ERVK -2510 5707 4894 1 1596 241 319 14 0 chr6 132638026 132638098 -16878939 - 7SK RNA RNA -224 107 35 1 1596 1827 323 79 67 chr6 132638098 132640241 -16876796 - RNERVK23-int LTR ERVK -2510 4893 2671 1 1596 523 237 0 0 chr6 132640938 132641056 -16875981 - RLTR45-int LTR ERVK -6434 810 693 1 1596 576 210 0 0 chr6 132641420 132641544 -16875493 - RLTR45-int LTR ERVK -6552 692 569 1 1596 1199 256 46 99 chr6 132642450 132643014 -16874023 - RLTR45-int LTR ERVK -6710 534 1 1 1596 504 224 48 0 chr6 132643014 132643139 -16873898 - RLTR45 LTR ERVK 0 482 352 1 199 19457 138 96 11 chr6 132643523 132645937 -16871100 + L1_Mus3 LINE L1 1800 4194 -1689 1 1597 552 15 0 0 chr6 132645937 132646002 -16871035 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1597 19457 124 61 58 chr6 132646002 132647746 -16869291 + L1_Mus3 LINE L1 4195 6190 -448 1 1597 550 88 42 50 chr6 132647752 132647872 -16869165 + L1_Mus3 LINE L1 6501 6619 -19 1 1597 620 304 91 22 chr6 132647872 132648191 -16868846 + Lx8 LINE L1 7120 7460 -13 1 1597 316 256 157 41 chr6 132648926 132649107 -16867930 + RMER12B LTR ERVK 1136 1299 -273 1 1597 399 56 0 0 chr6 132649107 132649161 -16867876 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1597 300 311 229 25 chr6 132649161 132649367 -16867670 + RMER12B LTR ERVK 1300 1571 -1 1 1597 259 198 121 24 chr6 132649503 132649586 -16867451 - B4 SINE B4 -197 95 5 1 1597 387 0 0 0 chr6 132651224 132651267 -16865770 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1597 453 372 5 36 chr6 132651813 132652036 -16865001 + B3 SINE B2 1 216 0 1 1597 189 391 56 5 chr6 132652047 132652245 -16864792 + L2 LINE L2 2805 3012 -407 1 1597 2014 208 46 14 chr6 132652396 132652831 -16864206 - RMER6B LTR ERVK -6 455 7 1 1597 229 294 33 66 chr6 132652977 132653068 -16863969 + B1F1 SINE Alu 28 115 -2 1 1597 320 285 80 46 chr6 132653113 132653264 -16863773 + L1MC LINE L1 4791 4946 -1200 1 1597 320 212 25 0 chr6 132653708 132653788 -16863249 - L1_Mur1 LINE L1 -6148 834 753 1 1597 344 197 0 0 chr6 132653910 132653981 -16863056 - L1_Mur1 LINE L1 -6231 751 681 1 1597 5290 148 32 10 chr6 132654003 132655252 -16861785 + Lx3C LINE L1 4811 6097 -879 1 1597 911 180 22 5 chr6 132655252 132655436 -16861601 + Lx3C LINE L1 6781 6967 -9 1 1597 7441 38 1 0 chr6 132656370 132657299 -16859738 - L1Md_T LINE L1 -1 6581 5652 1 1597 7886 25 3 0 chr6 132657299 132658264 -16858773 + L1Md_T LINE L1 4676 5643 -240 1 1597 1152 146 114 8 chr6 132659185 132659440 -16857597 - L1_Mus4 LINE L1 -1 6635 6354 1 1597 1096 71 7 0 chr6 132659683 132659824 -16857213 + B1_Mus1 SINE Alu 1 142 -6 1 1597 3614 229 63 10 chr6 132659889 132660847 -16856190 - Lx2B LINE L1 -14 6986 5979 1 1597 558 349 49 73 chr6 132662471 132662839 -16854198 - ORR1E LTR MaLR 0 359 1 2 1597 6790 180 16 6 chr6 132663044 132665271 -16851766 + Lx LINE L1 4400 6652 -2 2 1597 287 272 20 10 chr6 132665301 132665401 -16851636 + Lx9 LINE L1 5738 5873 -1771 2 1597 452 206 10 67 chr6 132665570 132665674 -16851363 + RMER12 LTR ERVK 1225 1322 0 2 1597 4339 28 2 0 chr6 132665831 132666332 -16850705 - L1Md_T LINE L1 0 6582 6081 2 1597 5416 14 0 0 chr6 132666332 132666981 -16850056 + L1_Mm LINE L1 5156 5804 -79 2 1597 1331 233 45 17 chr6 132666978 132667332 -16849705 - Lx9 LINE L1 -1669 5975 5612 2 1597 240 100 0 0 chr6 132667357 132667397 -16849640 + (TTA)n Simple_repeat Simple_repeat 3 42 0 2 1597 511 336 54 0 chr6 132667409 132667558 -16849479 - B3A SINE B2 -31 167 11 2 1597 369 0 0 0 chr6 132667810 132667851 -16849186 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1597 402 57 0 0 chr6 132667851 132667903 -16849134 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1597 4770 177 13 21 chr6 132667907 132668800 -16848237 - RMER12 LTR ERVK -436 886 1 2 1597 1341 255 24 6 chr6 132668872 132669200 -16847837 + Lx9 LINE L1 6308 6641 -1003 2 1597 286 146 281 0 chr6 132669193 132669275 -16847762 + Lx9 LINE L1 7451 7555 -89 2 1597 354 145 217 0 chr6 132669472 132669555 -16847482 - Lx9 LINE L1 -7 7637 7537 2 1597 256 243 26 26 chr6 132669555 132669631 -16847406 + B4 SINE B4 26 101 -191 2 1597 1996 217 155 8 chr6 132669667 132669725 -16847312 + RMER15 LTR ERVL 15 81 -494 2 1597 1030 119 11 11 chr6 132669725 132669904 -16847133 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 2 1597 1996 217 155 8 chr6 132669904 132670329 -16846708 + RMER15 LTR ERVL 82 569 -6 2 1597 366 248 0 0 chr6 132670458 132670567 -16846470 + (CA)n Simple_repeat Simple_repeat 1 109 0 2 1597 269 109 22 0 chr6 132671437 132671483 -16845554 + (CAT)n Simple_repeat Simple_repeat 3 49 0 2 1597 445 319 39 100 chr6 132671494 132671804 -16845233 + MTEb LTR MaLR 49 339 -40 2 1597 27 29 0 0 chr6 132672261 132672295 -16844742 + AT_rich Low_complexity Low_complexity 1 34 0 2 1597 2406 77 0 9 chr6 132672866 132673194 -16843843 - L1Md_F2 LINE L1 -4 6578 6254 2 1597 727 235 56 47 chr6 132673889 132674121 -16842916 + RMER12 LTR ERVK 553 786 -536 2 1597 884 247 67 140 chr6 132674109 132674481 -16842556 + RMER12 LTR ERVK 978 1322 0 2 1597 1600 214 17 3 chr6 132674705 132675051 -16841986 - Lx9 LINE L1 -238 7406 6898 2 1597 944 106 8 0 chr6 132676316 132676448 -16840589 - B1_Mus1 SINE Alu -15 133 1 2 1597 2048 263 46 63 chr6 132677064 132677820 -16839217 + Lx7 LINE L1 6939 7681 -15 2 1597 1288 303 43 42 chr6 132677959 132678580 -16838457 - Lx7 LINE L1 0 7696 7075 2 1597 483 279 77 38 chr6 132679105 132679288 -16837749 - RMER12 LTR ERVK -1132 190 1 2 1597 787 322 156 12 chr6 132679288 132679615 -16837422 + ORR1E-int LTR MaLR 1177 1550 -30 2 1597 735 330 49 43 chr6 132679599 132679947 -16837090 + ORR1E LTR MaLR 8 357 -2 2 1597 2256 72 3 25 chr6 132680332 132680659 -16836378 - L1Md_F2 LINE L1 0 6582 6263 2 1597 293 302 48 0 chr6 132680753 132680879 -16836158 + MER2 DNA MER2_type 99 230 -115 2 1597 323 258 43 0 chr6 132681539 132681632 -16835405 - MLT1A LTR MaLR -2 372 276 2 1597 2155 125 66 25 chr6 132681866 132682259 -16834778 - RLTR9E LTR ERVK 0 409 1 2 1597 654 318 30 55 chr6 132682274 132682403 -16834634 - ID_B1 SINE B4 -23 201 72 2 1597 1834 198 9 84 chr6 132682403 132682856 -16834181 + MTC LTR MaLR 1 419 -2 2 1597 654 318 30 55 chr6 132682856 132682926 -16834111 - ID SINE ID -153 71 7 2 1597 8036 44 5 8 chr6 132682944 132683992 -16833045 - L1Md_F2 LINE L1 -2 6580 5537 2 1597 8963 36 10 1 chr6 132683988 132685076 -16831961 + L1Md_F2 LINE L1 4478 5575 -308 2 1597 5472 133 51 9 chr6 132685228 132686176 -16830861 - Lx2 LINE L1 -1 6996 6010 2 1597 26 30 0 0 chr6 132686662 132686695 -16830342 + AT_rich Low_complexity Low_complexity 1 33 0 2 1597 221 311 0 25 chr6 132688456 132688620 -16828417 + (CATA)n Simple_repeat Simple_repeat 1 159 0 2 1597 330 80 0 0 chr6 132690038 132690088 -16826949 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1597 1647 31 0 0 chr6 132690300 132690493 -16826544 + B2_Mm1t SINE B2 1 193 0 2 1597 2432 241 68 28 chr6 132690545 132691144 -16825893 - Lx5 LINE L1 -164 6886 6264 2 1597 358 305 86 34 chr6 132691456 132691690 -16825347 + RMER15-int LTR ERVL 456 701 -4298 2 1597 656 218 3 0 chr6 132691834 132691985 -16825052 - URR1A DNA MER1_type -6 220 66 2 1597 422 220 193 0 chr6 132693065 132693174 -16823863 - RLTR42-int LTR ERVK -2648 2874 2745 2 1597 2057 181 56 13 chr6 132693174 132693565 -16823472 + MTC LTR MaLR 1 408 -13 2 1597 2143 202 52 25 chr6 132693572 132694050 -16822987 - RLTR42-int LTR ERVK -2773 2749 2259 2 1597 753 119 15 0 chr6 132694091 132694225 -16822812 - Lx LINE L1 -8 6646 6511 2 1597 1408 177 15 36 chr6 132694309 132694535 -16822502 + L1_Mur2 LINE L1 1846 2066 -3811 2 1597 246 62 0 0 chr6 132694535 132694567 -16822470 + (CCA)n Simple_repeat Simple_repeat 1 32 0 2 1597 1408 177 15 36 chr6 132694567 132694669 -16822368 + L1_Mur2 LINE L1 2067 2167 -3710 2 1597 233 162 43 14 chr6 132694701 132694770 -16822267 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2 1597 4066 75 0 16 chr6 132694786 132695339 -16821698 - L1Md_F2 LINE L1 -2 6580 6037 2 1597 386 194 112 0 chr6 132695339 132695427 -16821610 - Lx9 LINE L1 -170 7474 7376 2 1597 322 290 0 0 chr6 132695436 132695529 -16821508 - Lx9 LINE L1 -489 7155 7063 2 1597 1821 165 48 61 chr6 132695909 132696284 -16820753 - Lx3B LINE L1 -1 6972 6603 2 1597 22 35 0 0 chr6 132696466 132696495 -16820542 + AT_rich Low_complexity Low_complexity 1 29 0 2 1597 438 20 0 0 chr6 132697010 132697061 -16819976 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1597 351 0 0 0 chr6 132697061 132697100 -16819937 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1597 755 274 101 40 chr6 132697373 132697670 -16819367 - RMER5 LTR ERV1 0 534 220 2 1597 301 311 65 8 chr6 132697697 132697820 -16819217 - RMER5 LTR ERV1 -363 171 42 2 1597 440 299 35 61 chr6 132698545 132698855 -16818182 - Lx9 LINE L1 -118 7526 7225 2 1597 21 0 0 0 chr6 132699277 132699298 -16817739 + AT_rich Low_complexity Low_complexity 1 21 0 2 1597 264 91 0 0 chr6 132699610 132699654 -16817383 + (T)n Simple_repeat Simple_repeat 1 44 0 2 1597 205 267 16 16 chr6 132699873 132699934 -16817103 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1597 190 179 18 18 chr6 132699941 132699998 -16817039 + (CATA)n Simple_repeat Simple_repeat 4 60 0 2 1597 2020 222 55 48 chr6 132700080 132700650 -16816387 + RMER19B LTR ERVK 1 780 -122 2 1597 1194 41 0 26 chr6 132700993 132701144 -16815893 + B1_Mus1 SINE Alu 2 148 0 2 1597 450 0 0 0 chr6 132701162 132701212 -16815825 + (GAAA)n Simple_repeat Simple_repeat 1 50 0 2 1597 522 221 147 0 chr6 132701213 132701349 -16815688 + L1_Rod LINE L1 5550 5705 -142 2 1597 560 141 50 0 chr6 132701953 132702052 -16814985 - L1_Mur2 LINE L1 -3587 2290 2187 2 1597 205 75 50 0 chr6 132703442 132703482 -16813555 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 2 1597 886 66 0 0 chr6 132705775 132705896 -16811141 - L1_Mus1 LINE L1 0 6567 6447 2 1597 430 264 56 120 chr6 132705989 132706131 -16810906 + B1_Mur2 SINE Alu 9 141 -8 2 1597 433 242 21 10 chr6 132706508 132706604 -16810433 - MTE2a LTR MaLR -5 374 278 2 1597 640 274 61 56 chr6 132706952 132707384 -16809653 - RLTR40 LTR ERVK -18 799 306 2 1597 24 0 0 0 chr6 132707495 132707519 -16809518 + AT_rich Low_complexity Low_complexity 1 24 0 2 1597 619 234 69 34 chr6 132709818 132710022 -16807015 + B3 SINE B2 1 211 -5 2 1597 713 352 67 28 chr6 132710119 132710554 -16806483 - Lx8 LINE L1 0 7473 7022 2 1597 265 260 67 48 chr6 132711042 132711147 -16805890 + RLTR23 LTR ERV1 287 393 -37 2 1597 288 0 0 0 chr6 132711337 132711369 -16805668 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1597 232 229 0 0 chr6 132711567 132711615 -16805422 + GA-rich Low_complexity Low_complexity 3 50 0 2 1597 2419 289 104 18 chr6 132713242 132714136 -16802901 + Lx6 LINE L1 6244 7430 -30 2 1597 28 48 0 0 chr6 132714514 132714556 -16802481 + AT_rich Low_complexity Low_complexity 1 42 0 2 1597 37 0 0 0 chr6 132714580 132714617 -16802420 + AT_rich Low_complexity Low_complexity 1 37 0 2 1597 2271 144 10 5 chr6 132714702 132715101 -16801936 + L1_Mur2 LINE L1 5079 5479 -398 2 1597 38 0 0 0 chr6 132715163 132715201 -16801836 + AT_rich Low_complexity Low_complexity 1 38 0 2 1597 21 0 0 0 chr6 132715234 132715255 -16801782 + AT_rich Low_complexity Low_complexity 1 21 0 2 1597 3494 174 6 36 chr6 132715341 132716004 -16801033 - Lx2 LINE L1 -1 6996 6354 2 1597 227 159 30 45 chr6 132716339 132716405 -16800632 + T-rich Low_complexity Low_complexity 4 68 0 2 1597 1167 146 0 5 chr6 132716680 132716866 -16800171 - B2_Mm2 SINE B2 -8 187 3 2 1597 192 163 0 0 chr6 132716935 132716978 -16800059 + T-rich Low_complexity Low_complexity 2 44 0 2 1597 381 329 85 77 chr6 132717078 132717338 -16799699 - B4 SINE B4 -21 271 10 2 1597 3056 78 2 12 chr6 132717485 132717910 -16799127 - BGLII LTR ERVK 0 421 1 2 1597 21 0 0 0 chr6 132718158 132718179 -16798858 + AT_rich Low_complexity Low_complexity 1 21 0 2 1597 244 308 98 62 chr6 132718271 132718465 -16798572 - MER2B DNA MER2_type -111 225 25 2 1597 423 0 0 0 chr6 132718957 132719004 -16798033 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1597 234 0 0 0 chr6 132719439 132719465 -16797572 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1597 28 61 0 0 chr6 132720484 132720533 -16796504 + AT_rich Low_complexity Low_complexity 1 49 0 2 1597 198 0 0 0 chr6 132720796 132720818 -16796219 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2 1597 650 230 29 0 chr6 132720819 132720958 -16796079 - B1_Mus1 SINE Alu 0 148 6 2 1597 2957 85 175 9 chr6 132721113 132721577 -16795460 - L1Md_F2 LINE L1 0 6582 6042 2 1597 619 297 36 53 chr6 132722350 132722631 -16794406 + Lx7 LINE L1 7136 7411 -285 2 1597 404 314 60 62 chr6 132723104 132723536 -16793501 + L1M2 LINE L1 4227 4696 -1447 2 1597 793 175 0 12 chr6 132723614 132723787 -16793250 + GA-rich Low_complexity Low_complexity 2 172 0 3 1597 431 85 0 0 chr6 132724392 132724451 -16792586 + RLTR22_Mus LTR ERVK 1 59 -1749 3 1597 31 0 0 0 chr6 132725205 132725236 -16791801 + AT_rich Low_complexity Low_complexity 1 31 0 3 1597 279 108 17 50 chr6 132725864 132725951 -16791086 + RLTR22_Mus LTR ERVK 248 334 -1474 3 1597 273 118 0 0 chr6 132726415 132726466 -16790571 - Lx7 LINE L1 0 7696 7646 3 1597 207 114 0 0 chr6 132726669 132726704 -16790333 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1597 423 0 0 0 chr6 132728974 132729021 -16788016 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1597 3430 195 89 13 chr6 132729060 132729234 -16787803 + Lx2B LINE L1 6185 6382 -618 3 1597 234 0 0 0 chr6 132729234 132729260 -16787777 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1597 3430 195 89 13 chr6 132729260 132729839 -16787198 + Lx2B LINE L1 6383 6994 -6 3 1597 469 275 21 36 chr6 132729886 132730081 -16786956 - B3 SINE B2 -2 193 1 3 1597 515 224 8 33 chr6 132730168 132730288 -16786749 - B1_Mur3 SINE Alu 0 149 33 3 1597 672 217 36 11 chr6 132730263 132730422 -16786615 - B3A SINE B2 -57 159 1 3 1597 616 71 17 50 chr6 132730564 132730683 -16786354 - L1_Mus3 LINE L1 0 6638 6524 3 1597 3715 133 4 3 chr6 132730769 132731360 -16785677 + L1_Mus4 LINE L1 5568 6138 -498 3 1597 21 36 0 0 chr6 132731360 132731388 -16785649 + AT_rich Low_complexity Low_complexity 1 28 0 3 1597 24 0 0 0 chr6 132731696 132731720 -16785317 + AT_rich Low_complexity Low_complexity 1 24 0 3 1597 579 81 0 0 chr6 132732068 132732154 -16784883 + (TG)n Simple_repeat Simple_repeat 1 86 0 3 1597 217 113 75 0 chr6 132732154 132732207 -16784830 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 3 1597 334 105 31 31 chr6 132732494 132732592 -16784445 + T-rich Low_complexity Low_complexity 2 99 0 3 1597 680 224 14 14 chr6 132732593 132732738 -16784299 - B1_Mus2 SINE Alu 0 147 3 3 1597 25 65 0 0 chr6 132733030 132733076 -16783961 + AT_rich Low_complexity Low_complexity 1 46 0 3 1597 271 255 168 11 chr6 132733477 132733572 -16783465 - MLT1F2 LTR MaLR -411 149 40 3 1597 225 267 0 0 chr6 132734348 132734393 -16782644 + Lx7 LINE L1 6605 6649 -1047 3 1597 1194 288 41 26 chr6 132734393 132734732 -16782305 - RMER15 LTR ERVL 0 575 232 3 1597 32 67 0 0 chr6 132734892 132734952 -16782085 + AT_rich Low_complexity Low_complexity 1 60 0 3 1597 9302 113 20 18 chr6 132738104 132740227 -16776810 + L1VL4 LINE L1 243 2371 -1188 3 1597 994 337 60 60 chr6 132740412 132740894 -16776143 - MuRRS4-int LTR ERV1 -5108 2448 1971 3 1597 3011 179 38 48 chr6 132740894 132741505 -16775532 - RLTR1D LTR ERV1 0 605 1 3 1597 1063 328 39 46 chr6 132741505 132742284 -16774753 - MuRRS4-int LTR ERV1 -5586 1970 1050 3 1597 4656 148 35 35 chr6 132742592 132743479 -16773558 - RMER17D LTR ERVK -2 887 1 3 1597 4556 94 49 0 chr6 132743481 132744133 -16772904 - RMER17A-int LTR ERVK -2 1726 1043 3 1597 4948 128 20 34 chr6 132744136 132744661 -16772376 - RMER17D LTR ERVK -2 887 364 3 1597 756 0 0 0 chr6 132744661 132744745 -16772292 + (GGAGA)n Simple_repeat Simple_repeat 2 85 0 3 1597 4948 128 20 34 chr6 132744745 132745109 -16771928 - RMER17D LTR ERVK -526 363 10 3 1597 2116 150 14 88 chr6 132745109 132745652 -16771385 - RMER17A-int LTR ERVK -683 1045 214 3 1597 901 175 9 78 chr6 132745773 132745990 -16771047 - RMER17A-int LTR ERVK -1524 204 3 3 1597 350 169 46 0 chr6 132745992 132746057 -16770980 - RMER17D LTR ERVK 0 751 684 3 1597 4069 140 134 32 chr6 132746060 132746865 -16770172 - RMER17D LTR ERVK -2 887 1 3 1597 299 299 56 0 chr6 132747091 132747198 -16769839 - MuRRS4-int LTR ERV1 -6878 678 566 3 1597 606 174 148 0 chr6 132747736 132747891 -16769146 - RLTR47_MM LTR ERV1 0 532 355 3 1597 211 250 33 0 chr6 132747936 132747996 -16769041 - B1_Mm SINE Alu -2 145 84 3 1597 684 93 0 0 chr6 132748044 132748141 -16768896 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 3 1597 23 66 0 16 chr6 132748495 132748518 -16768519 + AT_rich Low_complexity Low_complexity 1 23 0 3 1597 2691 81 27 5 chr6 132748518 132748890 -16768147 + L1Md_F2 LINE L1 6193 6572 -10 3 1597 23 66 0 16 chr6 132748890 132748928 -16768109 + AT_rich Low_complexity Low_complexity 1 38 0 3 1597 351 230 0 0 chr6 132749073 132749160 -16767877 + (CATATA)n Simple_repeat Simple_repeat 5 91 0 3 1597 319 303 26 35 chr6 132749414 132749527 -16767510 - MLT1F2 LTR MaLR -409 151 40 3 1597 25 0 0 0 chr6 132750195 132750220 -16766817 + AT_rich Low_complexity Low_complexity 1 25 0 3 1597 1068 283 58 19 chr6 132750366 132750676 -16766361 - RMER15 LTR ERVL -3 572 251 3 1597 24 0 0 0 chr6 132750706 132750730 -16766307 + AT_rich Low_complexity Low_complexity 1 24 0 3 1597 24 0 0 0 chr6 132750859 132750883 -16766154 + AT_rich Low_complexity Low_complexity 1 24 0 3 1597 1293 70 0 0 chr6 132752171 132752342 -16764695 + L1_Mus1 LINE L1 6396 6566 -1 3 1597 23 33 0 0 chr6 132754082 132754112 -16762925 + AT_rich Low_complexity Low_complexity 1 30 0 3 1597 22 80 0 0 chr6 132754362 132754412 -16762625 + AT_rich Low_complexity Low_complexity 1 50 0 3 1597 29 0 0 0 chr6 132754528 132754557 -16762480 + AT_rich Low_complexity Low_complexity 1 29 0 3 1597 22 0 0 0 chr6 132754826 132754848 -16762189 + AT_rich Low_complexity Low_complexity 1 22 0 3 1597 29 0 0 0 chr6 132754898 132754927 -16762110 + AT_rich Low_complexity Low_complexity 1 29 0 3 1597 988 166 42 150 chr6 132755202 132755563 -16761474 + RLTRETN_Mm LTR ERVK 1 322 0 3 1597 265 328 37 45 chr6 132755633 132755767 -16761270 + B1F2 SINE Alu 2 134 -15 3 1597 3849 180 96 25 chr6 132755941 132756777 -16760260 + L1VL2 LINE L1 76 970 -5365 3 1597 7486 90 9 8 chr6 132756777 132758515 -16758522 + L1_Mus1 LINE L1 4829 6565 -2 3 1597 24 32 0 0 chr6 132758515 132758546 -16758491 + AT_rich Low_complexity Low_complexity 1 31 0 3 1597 26308 143 14 12 chr6 132758546 132763496 -16753541 + L1_Mus3 LINE L1 1248 6201 -437 3 1597 871 114 0 0 chr6 132763496 132763619 -16753418 + B1_Mm SINE Alu 17 139 -8 3 1597 366 23 0 0 chr6 132763619 132763662 -16753375 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1597 2596 127 24 2 chr6 132763662 132764071 -16752966 + L1_Mus3 LINE L1 6215 6632 -6 3 1597 6214 62 13 2 chr6 132764535 132765330 -16751707 + L1Md_F2 LINE L1 5766 6568 -14 3 1597 446 318 101 32 chr6 132765337 132765555 -16751482 - RMER15 LTR ERVL -68 507 275 3 1597 324 111 0 0 chr6 132765872 132765926 -16751111 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1597 27 0 0 0 chr6 132766783 132766810 -16750227 + AT_rich Low_complexity Low_complexity 1 27 0 3 1597 1131 256 77 50 chr6 132767978 132768157 -16748880 - RMER15 LTR ERVL 0 575 379 3 1597 189 0 0 0 chr6 132768157 132768178 -16748859 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1597 1131 256 77 50 chr6 132768178 132768335 -16748702 - RMER15 LTR ERVL -197 378 230 3 1597 28 29 0 0 chr6 132768495 132768530 -16748507 + AT_rich Low_complexity Low_complexity 1 35 0 3 1597 875 88 22 0 chr6 132771375 132771512 -16745525 - B1_Mus1 SINE Alu -1 147 8 3 1597 34 0 0 0 chr6 132771559 132771593 -16745444 + AT_rich Low_complexity Low_complexity 1 34 0 3 1597 27 73 0 0 chr6 132771987 132772042 -16744995 + AT_rich Low_complexity Low_complexity 1 55 0 3 1597 264 310 71 112 chr6 132773040 132773236 -16743801 + RMER5 LTR ERV1 41 228 -306 3 1597 507 328 99 0 chr6 132773407 132773608 -16743429 - ORR1D2 LTR MaLR -149 221 1 3 1597 1303 251 66 61 chr6 132773614 132774038 -16742999 - ORR1D2-int LTR MaLR -6 1364 939 3 1597 21 36 0 0 chr6 132774079 132774107 -16742930 + AT_rich Low_complexity Low_complexity 1 28 0 3 1597 698 62 10 0 chr6 132774717 132774813 -16742224 + (TTCC)n Simple_repeat Simple_repeat 1 97 0 3 1597 755 270 80 0 chr6 132775301 132775501 -16741536 - B3 SINE B2 0 216 1 3 1598 690 53 0 0 chr6 132776187 132776282 -16740755 + (TC)n Simple_repeat Simple_repeat 1 95 0 3 1598 288 0 0 0 chr6 132776282 132776313 -16740724 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1598 7488 109 15 22 chr6 132776601 132777754 -16739283 - Lx3_Mus LINE L1 -73 6936 5792 3 1598 1116 75 7 0 chr6 132777756 132777902 -16739135 + B1_Mm SINE Alu 1 147 0 3 1598 194 0 39 0 chr6 132777911 132777937 -16739100 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1598 6277 116 26 16 chr6 132777943 132778966 -16738071 - L1_Mur1 LINE L1 -1817 4069 3030 3 1598 6665 47 0 1 chr6 132778966 132779779 -16737258 + L1Md_F2 LINE L1 5759 6570 -12 3 1598 6277 116 26 16 chr6 132779779 132779818 -16737219 - L1_Mur1 LINE L1 -2857 3029 2996 3 1598 322 196 0 0 chr6 132779832 132779888 -16737149 - L1_Mur1 LINE L1 -6370 614 559 3 1598 974 120 126 0 chr6 132779888 132780055 -16736982 + BGLII LTR ERVK 1 188 -233 3 1598 2230 148 11 3 chr6 132780055 132780422 -16736615 + Lx2B LINE L1 5650 6019 -981 3 1598 667 279 43 43 chr6 132780422 132780632 -16736405 + MTD LTR MaLR 173 382 -37 3 1598 24 0 0 0 chr6 132780699 132780723 -16736314 + AT_rich Low_complexity Low_complexity 1 24 0 3 1598 21 0 0 0 chr6 132780752 132780773 -16736264 + AT_rich Low_complexity Low_complexity 1 21 0 3 1598 21 0 0 0 chr6 132780907 132780928 -16736109 + AT_rich Low_complexity Low_complexity 1 21 0 3 1598 430 353 19 19 chr6 132781006 132781165 -16735872 + RSINE1 SINE B4 7 165 0 3 1598 565 110 18 0 chr6 132781165 132781274 -16735763 + (CA)n Simple_repeat Simple_repeat 1 111 0 3 1598 375 78 0 0 chr6 132781274 132781325 -16735712 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1598 198 71 0 0 chr6 132781526 132781554 -16735483 + (TGG)n Simple_repeat Simple_repeat 1 28 0 3 1598 315 49 0 0 chr6 132782128 132782169 -16734868 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 3 1598 330 309 124 33 chr6 132783357 132784105 -16732932 - L1MA4 LINE L1 -382 5918 5096 3 1598 946 288 73 14 chr6 132784256 132784796 -16732241 - L1MA4 LINE L1 -1309 4834 4215 3 1598 37902 31 1 0 chr6 132784870 132791562 -16725475 - L1Md_T LINE L1 0 6585 1 3 1598 255 316 60 52 chr6 132791706 132791958 -16725079 - L1MA4 LINE L1 -2131 4012 3730 3 1598 303 303 0 20 chr6 132791958 132792059 -16724978 + (TATATG)n Simple_repeat Simple_repeat 1 99 0 3 1598 2506 96 8 3 chr6 132792125 132792481 -16724556 + L1_Mus2 LINE L1 6209 6566 0 3 1598 371 294 90 16 chr6 132792511 132792755 -16724282 - L1MA4 LINE L1 -2371 3772 3485 3 1598 312 287 78 88 chr6 132792780 132793074 -16723963 - CYRA11_Mm Unknown Y-chromosome -153 464 174 3 1598 918 223 41 45 chr6 132792856 132793077 -16723960 + URR1A DNA MER1_type 7 226 0 3 1598 21 36 0 0 chr6 132793168 132793196 -16723841 + AT_rich Low_complexity Low_complexity 1 28 0 3 1598 26 64 0 0 chr6 132795770 132795817 -16721220 + AT_rich Low_complexity Low_complexity 1 47 0 3 1598 284 341 34 88 chr6 132796205 132796353 -16720684 + PB1 SINE Alu 10 149 0 3 1598 3358 274 60 70 chr6 132798480 132799829 -16717208 + Lx9 LINE L1 6302 7636 -8 3 1598 396 0 0 0 chr6 132800466 132800510 -16716527 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1598 204 67 0 0 chr6 132800944 132800974 -16716063 + (TTG)n Simple_repeat Simple_repeat 3 32 0 4 1598 742 73 64 0 chr6 132800974 132801083 -16715954 - B1_Mus1 SINE Alu -32 116 1 4 1598 216 0 0 0 chr6 132801092 132801116 -16715921 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1598 7374 107 13 5 chr6 132801122 132802636 -16714401 + L1_Mus3 LINE L1 5114 6638 0 4 1598 26 30 0 0 chr6 132803301 132803334 -16713703 + AT_rich Low_complexity Low_complexity 1 33 0 4 1598 423 0 0 0 chr6 132803389 132803436 -16713601 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1598 495 0 0 0 chr6 132803436 132803490 -16713547 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1598 327 25 0 0 chr6 132804023 132804063 -16712974 + (TC)n Simple_repeat Simple_repeat 2 41 0 4 1598 1058 68 0 0 chr6 132804064 132804197 -16712840 - B1_Mm SINE Alu -14 133 1 4 1598 1450 271 58 10 chr6 132806762 132807160 -16709877 + MTD LTR MaLR 3 419 0 4 1598 3395 172 49 5 chr6 132807464 132808219 -16708818 + Lx3B LINE L1 6126 6971 -38 4 1598 28 48 0 0 chr6 132808363 132808405 -16708632 + AT_rich Low_complexity Low_complexity 1 42 0 4 1598 31 26 0 0 chr6 132808472 132808510 -16708527 + AT_rich Low_complexity Low_complexity 1 38 0 4 1598 29 47 0 0 chr6 132808848 132808891 -16708146 + AT_rich Low_complexity Low_complexity 1 43 0 4 1598 213 209 0 0 chr6 132809052 132809119 -16707918 + GA-rich Low_complexity Low_complexity 2 68 0 4 1598 38 39 0 0 chr6 132809256 132809308 -16707729 + AT_rich Low_complexity Low_complexity 1 52 0 4 1598 274 254 0 16 chr6 132809385 132809449 -16707588 + PB1 SINE Alu 1 63 -64 4 1598 33 0 0 0 chr6 132809491 132809524 -16707513 + AT_rich Low_complexity Low_complexity 1 33 0 4 1598 364 366 24 30 chr6 132809602 132809768 -16707269 + RSINE1 SINE B4 1 165 0 4 1598 264 200 29 0 chr6 132809768 132809873 -16707164 + (CA)n Simple_repeat Simple_repeat 1 108 0 4 1598 305 186 14 0 chr6 132809876 132809946 -16707091 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 1598 375 41 0 0 chr6 132810155 132810204 -16706833 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1598 573 323 82 25 chr6 132811553 132811871 -16705166 - Lx7 LINE L1 -322 7374 7039 4 1598 250 255 119 14 chr6 132812114 132812257 -16704780 - L1MA4 LINE L1 -383 5917 5760 4 1598 435 295 31 16 chr6 132812408 132812601 -16704436 - L1MA4 LINE L1 -740 5557 5362 4 1598 305 319 52 0 chr6 132812659 132812794 -16704243 - L1MA4 LINE L1 -867 5276 5135 4 1598 344 319 41 5 chr6 132812977 132813172 -16703865 - L1MA4 LINE L1 -1307 4836 4635 4 1598 275 300 69 18 chr6 132813184 132813475 -16703562 - L1MA4 LINE L1 -1608 4535 4238 4 1598 359 305 63 36 chr6 132813571 132813792 -16703245 - L1MA4 LINE L1 -2143 4003 3744 4 1598 229 224 13 107 chr6 132813813 132813888 -16703149 - Charlie9 DNA MER1_type -65 2692 2625 4 1598 235 259 46 0 chr6 132813929 132814037 -16703000 - L1M2 LINE L1 -2648 3495 3383 4 1598 1096 182 84 0 chr6 132814048 132814251 -16702786 + URR1A DNA MER1_type 7 226 0 4 1598 227 359 47 94 chr6 132816131 132816343 -16700694 + ORR1E LTR MaLR 51 252 -107 4 1598 234 386 27 33 chr6 132817030 132817180 -16699857 + B1F1 SINE Alu 1 149 0 4 1598 2584 278 18 20 chr6 132819287 132820017 -16697020 + Lx9 LINE L1 6450 7177 -467 4 1598 905 79 0 16 chr6 132820047 132820175 -16696862 - B1_Mm SINE Alu 0 147 22 4 1598 225 0 0 0 chr6 132820231 132820256 -16696781 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1598 284 127 0 18 chr6 132820274 132820330 -16696707 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 1598 252 308 37 28 chr6 132820364 132820471 -16696566 - RMER12 LTR ERVK -466 856 749 4 1598 386 239 9 0 chr6 132820471 132820580 -16696457 + Lx9 LINE L1 7527 7636 -8 4 1598 28 0 0 0 chr6 132820722 132820750 -16696287 + AT_rich Low_complexity Low_complexity 1 28 0 4 1598 24 67 0 0 chr6 132820796 132820841 -16696196 + AT_rich Low_complexity Low_complexity 1 45 0 4 1598 838 326 44 19 chr6 132821109 132821428 -16695609 + RLTR18B LTR ERVK 186 512 0 4 1598 225 62 20 40 chr6 132822639 132822689 -16694348 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 1598 531 0 0 0 chr6 132822920 132822979 -16694058 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 4 1598 366 129 16 0 chr6 132822983 132823045 -16693992 - Lx3_Mus LINE L1 -840 6169 6107 4 1598 5135 106 65 9 chr6 132823045 132823841 -16693196 + Lx3_Mus LINE L1 6167 7007 -2 4 1598 227 31 0 30 chr6 132823941 132823974 -16693063 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1598 5787 103 18 1 chr6 132824237 132825421 -16691616 - L1VL4 LINE L1 -2240 1319 116 4 1598 38255 8 0 0 chr6 132825878 132831227 -16685810 + L1Md_A LINE L1 237 5586 -297 4 1598 9046 1 0 0 chr6 132831227 132832223 -16684814 + L1Md_A LINE L1 5587 6582 0 4 1598 25 0 0 0 chr6 132832833 132832858 -16684179 + AT_rich Low_complexity Low_complexity 1 25 0 4 1598 445 134 0 0 chr6 132832943 132833025 -16684012 + Lx LINE L1 6566 6647 -7 4 1598 35 0 0 0 chr6 132833156 132833191 -16683846 + AT_rich Low_complexity Low_complexity 1 35 0 4 1598 2416 134 7 32 chr6 132833196 132833628 -16683409 - L1_Mur2 LINE L1 -1115 4762 4342 4 1598 948 112 28 0 chr6 132833628 132833771 -16683266 + B1_Mus1 SINE Alu 2 148 0 4 1598 204 49 0 89 chr6 132833774 132833819 -16683218 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 4 1598 389 159 0 42 chr6 132833819 132833891 -16683146 - L1_Mur2 LINE L1 -1526 4351 4283 4 1598 5421 183 33 31 chr6 132833890 132834136 -16682901 + Lx2B LINE L1 4765 5006 -871 4 1598 6750 124 53 22 chr6 132834136 132834204 -16682833 + Lx3_Mus LINE L1 5836 5903 -1106 4 1598 213 39 0 0 chr6 132834204 132834230 -16682807 + (GAAA)n Simple_repeat Simple_repeat 4 29 0 4 1598 6750 124 53 22 chr6 132834230 132835292 -16681745 + Lx3_Mus LINE L1 5904 7000 -9 4 1598 5432 198 40 39 chr6 132835292 132837198 -16679839 + Lx2B LINE L1 5007 6925 -75 4 1598 210 116 23 23 chr6 132837216 132837260 -16679777 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 4 1598 1683 162 155 26 chr6 132837278 132837665 -16679372 - RLTR9B LTR ERVK 0 437 1 4 1598 643 197 0 0 chr6 132837805 132837932 -16679105 - Lx2 LINE L1 -2 6995 6869 4 1598 243 0 0 0 chr6 132838032 132838059 -16678978 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 4 1598 5741 234 117 35 chr6 132838119 132838940 -16678097 + Lx7 LINE L1 3714 4638 -1242 4 1598 558 0 0 0 chr6 132838940 132839002 -16678035 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1598 315 0 0 0 chr6 132839002 132839036 -16678001 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1598 198 0 0 0 chr6 132839036 132839058 -16677979 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 4 1598 5741 234 117 35 chr6 132839058 132839602 -16677435 + Lx7 LINE L1 4639 5218 -662 4 1598 309 109 0 0 chr6 132839602 132839648 -16677389 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1598 5741 234 117 35 chr6 132839648 132840280 -16676757 + Lx7 LINE L1 5219 5877 -3 4 1598 754 215 55 7 chr6 132840303 132840520 -16676517 + Lx7 LINE L1 6096 6342 -1354 4 1598 6179 193 46 15 chr6 132840732 132842051 -16674986 - Lx3C LINE L1 -49 6927 5631 4 1598 452 249 67 0 chr6 132844169 132844301 -16672736 - Lx8 LINE L1 -1558 5915 5769 4 1598 322 301 158 14 chr6 132844639 132844848 -16672189 + Lx8 LINE L1 7179 7417 -56 4 1598 447 52 0 0 chr6 132844852 132844910 -16672127 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1598 236 158 0 17 chr6 132845146 132845204 -16671833 + CT-rich Low_complexity Low_complexity 1 57 0 4 1598 510 321 12 36 chr6 132845434 132845599 -16671438 + Lx8 LINE L1 6991 7151 -322 4 1598 23 54 0 0 chr6 132845914 132845951 -16671086 + AT_rich Low_complexity Low_complexity 1 37 0 4 1598 1111 275 63 53 chr6 132846208 132846619 -16670418 + MTD LTR MaLR 5 419 0 4 1598 34 65 0 0 chr6 132847162 132847224 -16669813 + AT_rich Low_complexity Low_complexity 1 62 0 4 1598 261 0 0 0 chr6 132847585 132847614 -16669423 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1598 541 331 24 6 chr6 132847969 132848136 -16668901 - B3A SINE B2 -20 178 9 4 1598 21 0 0 0 chr6 132848549 132848570 -16668467 + AT_rich Low_complexity Low_complexity 1 21 0 4 1598 1431 38 12 4 chr6 132848911 132849150 -16667887 + (TTTC)n Simple_repeat Simple_repeat 1 241 0 4 1598 5674 158 6 18 chr6 132849715 132850703 -16666334 - Lx3C LINE L1 -14 6962 5987 4 1598 676 120 7 57 chr6 132850706 132850847 -16666190 - Lx3C LINE L1 -873 6103 5970 4 1598 1290 115 5 5 chr6 132851234 132851426 -16665611 + B2_Mm2 SINE B2 2 193 -2 4 1598 337 293 73 0 chr6 132851426 132851548 -16665489 - B1_Mur2 SINE Alu -13 136 5 4 1598 390 376 73 34 chr6 132853189 132853630 -16663407 + RMER5 LTR ERV1 43 500 -34 4 1598 37 23 0 0 chr6 132853730 132853774 -16663263 + AT_rich Low_complexity Low_complexity 1 44 0 4 1598 252 0 0 0 chr6 132853955 132853983 -16663054 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1598 404 294 91 29 chr6 132854595 132854770 -16662267 - Lx8 LINE L1 -899 6574 6389 4 1598 6579 91 21 5 chr6 132854795 132855752 -16661285 + Lx3_Mus LINE L1 6030 7001 -8 4 1598 413 322 16 43 chr6 132855773 132855961 -16661076 - Lx8 LINE L1 -1086 6387 6205 4 1598 840 188 6 35 chr6 132855964 132856135 -16660902 - URR1B DNA MER1_type 0 225 60 4 1598 250 294 44 0 chr6 132857413 132857481 -16659556 + MTE2b LTR MaLR 44 114 -265 4 1598 603 27 0 0 chr6 132857515 132857588 -16659449 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1598 405 0 0 0 chr6 132857588 132857633 -16659404 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1598 622 249 107 62 chr6 132857636 132857851 -16659186 + MTE2b LTR MaLR 182 400 -19 4 1598 234 312 25 0 chr6 132861390 132861470 -16655567 + Lx7 LINE L1 6593 6674 -1022 4 1598 2106 235 33 60 chr6 132862255 132862825 -16654212 - RMER2 LTR ERV1 -12 555 1 4 1598 1206 41 7 0 chr6 132863527 132863672 -16653365 + B1_Mus2 SINE Alu 2 147 0 4 1598 236 131 0 21 chr6 132863672 132863719 -16653318 + A-rich Low_complexity Low_complexity 4 49 0 4 1598 498 380 57 29 chr6 132863738 132864052 -16652985 - LTR31 LTR ERV1 -124 495 173 4 1598 1126 109 6 6 chr6 132864331 132864506 -16652531 + L1_Mus2 LINE L1 6385 6559 -7 4 1598 5591 170 10 12 chr6 132866123 132867145 -16649892 + Lx3B LINE L1 5946 6965 -8 4 1598 1158 66 0 0 chr6 132867145 132867297 -16649740 - B2_Mm1t SINE B2 -41 152 1 4 1598 412 313 79 43 chr6 132867800 132867863 -16649174 - ID_B1 SINE B4 0 224 156 4 1598 2665 99 15 18 chr6 132867863 132868264 -16648773 - MTB LTR MaLR 0 400 1 4 1598 412 313 79 43 chr6 132868264 132868340 -16648697 - ID_B1 SINE B4 -69 155 80 4 1598 6924 58 12 4 chr6 132868809 132869697 -16647340 - L1Md_F2 LINE L1 -13 6569 5699 4 1598 6999 91 41 2 chr6 132870364 132871548 -16645489 - L1_Mus1 LINE L1 0 6567 5355 4 1598 28039 92 6 13 chr6 132871557 132875972 -16641065 + L1Md_F2 LINE L1 622 5041 -845 4 1598 1422 44 11 0 chr6 132875972 132876153 -16640884 - B2_Mm1a SINE B2 -4 189 7 5 1598 28039 92 6 13 chr6 132876153 132876698 -16640339 + L1Md_F2 LINE L1 5042 5588 -298 4 1598 6903 81 23 14 chr6 132876699 132877673 -16639364 + L1Md_F2 LINE L1 5587 6568 -14 4 1598 21 0 0 0 chr6 132877688 132877709 -16639328 + AT_rich Low_complexity Low_complexity 1 21 0 5 1598 343 362 35 27 chr6 132877863 132878121 -16638916 - Lx8 LINE L1 -93 7380 7121 5 1598 878 125 7 0 chr6 132878127 132878271 -16638766 + (TTC)n Simple_repeat Simple_repeat 1 145 0 5 1598 777 76 0 0 chr6 132878489 132878594 -16638443 + (GGGAGA)n Simple_repeat Simple_repeat 5 109 0 5 1598 190 302 19 19 chr6 132879655 132879709 -16637328 + L3 LINE CR1 4426 4479 -10 5 1598 341 22 22 0 chr6 132879881 132879927 -16637110 + (CAAT)n Simple_repeat Simple_repeat 4 50 0 5 1598 1984 218 66 34 chr6 132880215 132880713 -16636324 - RLTR28 LTR ERVL -10 514 1 5 1598 200 122 24 0 chr6 132880961 132881002 -16636035 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1598 22 0 0 0 chr6 132881751 132881773 -16635264 + AT_rich Low_complexity Low_complexity 1 22 0 5 1598 319 194 30 0 chr6 132881923 132881990 -16635047 - Lx6 LINE L1 -15 7445 7377 5 1598 1691 132 140 81 chr6 132882328 132882699 -16634338 + RLTR9C LTR ERVK 1 393 0 5 1598 195 42 0 0 chr6 132883366 132883390 -16633647 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1598 291 54 0 0 chr6 132885160 132885197 -16631840 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1598 1119 147 66 18 chr6 132885200 132885428 -16631609 - Lx3B LINE L1 -3 6970 6732 5 1598 49 18 0 0 chr6 132885446 132885502 -16631535 + AT_rich Low_complexity Low_complexity 1 56 0 5 1598 220 70 0 44 chr6 132886893 132886938 -16630099 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 5 1598 268 111 0 31 chr6 132886943 132887008 -16630029 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 5 1598 2166 323 67 29 chr6 132887009 132887797 -16629240 - Lx7 LINE L1 -385 7311 6501 5 1598 908 147 227 5 chr6 132887797 132887982 -16629055 + URR1A DNA MER1_type 1 226 0 5 1598 2166 325 73 31 chr6 132887982 132888409 -16628628 - Lx7 LINE L1 -1196 6500 6057 5 1598 420 55 0 0 chr6 132888798 132888853 -16628184 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1598 753 247 120 56 chr6 132889203 132889583 -16627454 + Lx7 LINE L1 6088 6450 -1023 5 1598 835 311 62 20 chr6 132889586 132889927 -16627110 - Lx8 LINE L1 -900 6573 6219 5 1598 574 224 8 8 chr6 132889943 132890060 -16626977 - MTC LTR MaLR -2 419 303 5 1598 343 295 30 23 chr6 132890073 132890205 -16626832 + Lx8 LINE L1 6356 6488 -985 5 1598 1033 209 169 11 chr6 132890205 132890387 -16626650 - MTC LTR MaLR -112 309 126 5 1598 1985 144 71 11 chr6 132890387 132890638 -16626399 + Lx LINE L1 6269 6518 -136 5 1598 225 0 0 0 chr6 132890638 132890663 -16626374 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 5 1598 1985 144 71 11 chr6 132890663 132890761 -16626276 + Lx LINE L1 6519 6638 -16 5 1598 873 129 0 0 chr6 132890761 132890900 -16626137 + (GAAA)n Simple_repeat Simple_repeat 3 141 0 5 1598 1033 209 169 11 chr6 132890900 132890982 -16626055 - MTC LTR MaLR -296 125 5 5 1598 3883 71 41 7 chr6 132891040 132891579 -16625458 - LTRIS2 LTR ERV1 0 564 8 5 1598 759 219 0 7 chr6 132891579 132891717 -16625320 - B1_Mur3 SINE Alu -8 141 5 5 1598 618 234 177 0 chr6 132891841 132892033 -16625004 - URR1A DNA MER1_type 0 226 1 5 1598 349 252 71 18 chr6 132892181 132892294 -16624743 - PB1D9 SINE Alu 0 120 2 5 1598 312 27 0 0 chr6 132892666 132892703 -16624334 + (CAATA)n Simple_repeat Simple_repeat 4 40 0 5 1598 251 306 0 0 chr6 132892742 132892804 -16624233 - Lx7 LINE L1 -416 7280 7219 5 1598 423 162 40 0 chr6 132892991 132893090 -16623947 + Lx LINE L1 6549 6651 -3 5 1598 184 30 29 29 chr6 132893786 132893820 -16623217 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1598 1109 68 7 0 chr6 132893820 132893957 -16623080 - B1_Mus2 SINE Alu -8 139 2 5 1598 7382 82 1 10 chr6 132894114 132895114 -16621923 + L1Md_F2 LINE L1 5591 6581 -1 5 1598 276 30 0 0 chr6 132895307 132895340 -16621697 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1598 75 39 0 0 chr6 132895537 132895640 -16621397 + AT_rich Low_complexity Low_complexity 1 103 0 5 1598 27 62 0 0 chr6 132896298 132896346 -16620691 + AT_rich Low_complexity Low_complexity 1 48 0 5 1598 25 31 0 0 chr6 132896446 132896478 -16620559 + AT_rich Low_complexity Low_complexity 1 32 0 5 1598 26 50 0 0 chr6 132896622 132896662 -16620375 + AT_rich Low_complexity Low_complexity 1 40 0 5 1598 396 62 47 0 chr6 132897512 132897576 -16619461 + L1Md_F2 LINE L1 6513 6579 -3 5 1598 1150 43 0 0 chr6 132897586 132897725 -16619312 + B1_Mus1 SINE Alu 2 140 -8 5 1598 208 0 62 0 chr6 132897725 132897757 -16619280 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1598 399 238 146 7 chr6 132899405 132899549 -16617488 - RLTR42-int LTR ERVK -4122 1400 1237 5 1598 26 30 0 0 chr6 132902219 132902252 -16614785 + AT_rich Low_complexity Low_complexity 1 33 0 5 1598 448 357 50 38 chr6 132902671 132902683 -16614354 - RSINE1 SINE B4 -1 164 156 5 1598 186 43 0 0 chr6 132902683 132902706 -16614331 + (CG)n Simple_repeat Simple_repeat 2 24 0 5 1598 448 357 50 38 chr6 132902706 132902853 -16614184 - RSINE1 SINE B4 -10 155 3 5 1598 311 265 10 19 chr6 132903048 132903152 -16613885 + Lx4A LINE L1 6956 7058 0 5 1598 223 123 0 66 chr6 132903152 132903213 -16613824 + A-rich Low_complexity Low_complexity 3 59 0 5 1598 3240 181 5 12 chr6 132903215 132903807 -16613230 + L1_Mur2 LINE L1 5283 5870 -7 5 1598 1157 167 0 19 chr6 132903801 132904009 -16613028 + Lx4B LINE L1 6499 6702 -356 5 1598 216 297 0 0 chr6 132904658 132904749 -16612288 + GA-rich Low_complexity Low_complexity 1 91 0 5 1598 1371 62 0 0 chr6 132904750 132904928 -16612109 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 5 1598 1953 246 74 22 chr6 132905565 132906118 -16610919 + RMER1C Other Other 753 1334 -8 5 1598 768 265 45 10 chr6 132906286 132906488 -16610549 + B3 SINE B2 1 209 -7 5 1598 183 42 0 0 chr6 132906496 132906520 -16610517 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 1599 25 51 0 0 chr6 132908143 132908182 -16608855 + AT_rich Low_complexity Low_complexity 1 39 0 5 1599 369 0 0 0 chr6 132908953 132908994 -16608043 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1599 23 0 0 0 chr6 132910069 132910092 -16606945 + AT_rich Low_complexity Low_complexity 1 23 0 5 1599 1020 97 7 27 chr6 132910153 132910289 -16606748 + B1_Mus1 SINE Alu 2 138 -10 5 1599 435 63 0 0 chr6 132910289 132910352 -16606685 + (CTAAA)n Simple_repeat Simple_repeat 3 65 0 5 1599 1020 97 7 27 chr6 132910352 132910364 -16606673 + B1_Mus1 SINE Alu 139 147 -1 5 1599 4289 174 19 3 chr6 132910541 132911397 -16605640 - L1_Mur1 LINE L1 -2122 3764 2896 5 1599 3953 96 37 18 chr6 132911397 132912015 -16605022 + RLTR22_Mur LTR ERVK 1 630 -1218 5 1599 2921 61 200 9 chr6 132912015 132912445 -16604592 - RLTR1B LTR ERV1 0 512 1 5 1599 66630 20 0 0 chr6 132912445 132920000 -16597037 - MMERGLN-int LTR ERV1 0 7556 1 5 1599 2144 89 33 12 chr6 132920000 132920415 -16596622 - RLTR1B LTR ERV1 0 512 23 5 1599 3336 179 82 76 chr6 132920409 132920674 -16596363 + RLTR25A LTR ERVK 269 504 -599 5 1599 189 0 0 0 chr6 132920674 132920695 -16596342 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 1599 3336 179 82 76 chr6 132920695 132921084 -16595953 + RLTR25A LTR ERVK 505 921 -182 5 1599 387 0 0 0 chr6 132921084 132921127 -16595910 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1599 3336 179 82 76 chr6 132921127 132921301 -16595736 + RLTR25A LTR ERVK 922 1103 0 5 1599 531 331 24 12 chr6 132922230 132922395 -16594642 - B3 SINE B2 0 216 50 5 1599 420 20 0 0 chr6 132922525 132922574 -16594463 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1599 1134 49 21 0 chr6 132922802 132922944 -16594093 + B1_Mm SINE Alu 3 147 0 5 1599 432 135 0 0 chr6 132922944 132923018 -16594019 + (GAAAA)n Simple_repeat Simple_repeat 2 75 0 5 1599 296 234 0 11 chr6 132923300 132923395 -16593642 + CT-rich Low_complexity Low_complexity 3 96 0 5 1599 408 71 0 0 chr6 132923444 132923500 -16593537 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1599 21 0 0 0 chr6 132923969 132923990 -16593047 + AT_rich Low_complexity Low_complexity 1 21 0 5 1599 718 240 74 30 chr6 132924165 132924367 -16592670 + B3 SINE B2 1 211 -5 5 1599 1104 50 0 0 chr6 132924854 132924993 -16592044 + (GAAA)n Simple_repeat Simple_repeat 4 142 0 5 1599 1166 128 11 0 chr6 132925297 132925476 -16591561 - B2_Mm1t SINE B2 -12 181 1 5 1599 489 367 39 35 chr6 132925491 132925694 -16591343 - B3 SINE B2 -11 205 2 5 1599 967 273 93 57 chr6 132925880 132926053 -16590984 + ORR1D2-int LTR MaLR 949 1134 -236 5 1599 315 0 0 0 chr6 132926053 132926088 -16590949 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1599 967 273 93 57 chr6 132926088 132926321 -16590716 + ORR1D2-int LTR MaLR 1135 1369 -1 5 1599 604 331 60 75 chr6 132926321 132926345 -16590692 + ORR1D2 LTR MaLR 1 24 -346 5 1599 3447 34 0 128 chr6 132926345 132926845 -16590192 + RLTR10C LTR ERVK 1 436 0 5 1599 604 331 60 75 chr6 132926845 132927101 -16589936 + ORR1D2 LTR MaLR 25 277 -93 5 1599 241 325 72 40 chr6 132927246 132927371 -16589666 - RMER5 LTR ERV1 -346 188 60 5 1599 47 82 0 0 chr6 132928511 132928621 -16588416 + AT_rich Low_complexity Low_complexity 1 110 0 5 1599 6771 58 6 5 chr6 132928935 132929789 -16587248 - RLTR13A LTR ERVK 0 855 1 5 1599 338 151 14 0 chr6 132931589 132931662 -16585375 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1599 29 28 0 0 chr6 132932853 132932889 -16584148 + AT_rich Low_complexity Low_complexity 1 36 0 5 1599 1115 294 64 18 chr6 132933037 132933363 -16583674 + RMER15 LTR ERVL 230 570 -5 5 1599 257 127 254 0 chr6 132933481 132933552 -16583485 + Lx8 LINE L1 7382 7470 -3 5 1599 195 139 0 0 chr6 132933712 132933748 -16583289 + (GAA)n Simple_repeat Simple_repeat 1 36 0 5 1599 238 291 37 25 chr6 132934244 132934325 -16582712 + MLT1F1 LTR MaLR 69 150 -419 5 1599 22 56 0 0 chr6 132935407 132935443 -16581594 + AT_rich Low_complexity Low_complexity 1 36 0 5 1599 875 141 13 0 chr6 132935466 132935622 -16581415 + C-rich Low_complexity Low_complexity 6 163 0 5 1599 597 297 92 28 chr6 132935956 132936174 -16580863 + RMER15 LTR ERVL 298 529 -46 5 1599 253 352 40 8 chr6 132936995 132937121 -16579916 - B1F2 SINE Alu -18 131 2 5 1599 33 43 0 0 chr6 132937454 132937501 -16579536 + AT_rich Low_complexity Low_complexity 1 47 0 5 1599 5222 12 0 0 chr6 132937583 132938170 -16578867 + L1Md_T LINE L1 5996 6582 0 5 1599 946 288 73 14 chr6 132938244 132938784 -16578253 + L1MA4 LINE L1 4215 4834 -1309 5 1599 330 309 124 33 chr6 132938935 132939683 -16577354 + L1MA4 LINE L1 5096 5918 -382 5 1599 315 49 0 0 chr6 132940871 132940912 -16576125 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 6 1599 198 71 0 0 chr6 132941486 132941514 -16575523 + (CCA)n Simple_repeat Simple_repeat 1 28 0 6 1599 357 82 0 0 chr6 132941715 132941764 -16575273 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1599 565 110 18 0 chr6 132941764 132941873 -16575164 + (TG)n Simple_repeat Simple_repeat 1 111 0 6 1599 430 353 19 19 chr6 132941873 132942032 -16575005 - RSINE1 SINE B4 0 165 7 6 1599 21 0 0 0 chr6 132942110 132942131 -16574906 + AT_rich Low_complexity Low_complexity 1 21 0 6 1599 21 0 0 0 chr6 132942265 132942286 -16574751 + AT_rich Low_complexity Low_complexity 1 21 0 6 1599 24 0 0 0 chr6 132942315 132942339 -16574698 + AT_rich Low_complexity Low_complexity 1 24 0 6 1599 667 279 43 43 chr6 132942406 132942616 -16574421 - MTD LTR MaLR -37 382 173 6 1599 2230 148 11 3 chr6 132942616 132942983 -16574054 - Lx2B LINE L1 -981 6019 5650 6 1599 974 120 126 0 chr6 132942983 132943150 -16573887 - BGLII LTR ERVK -233 188 1 6 1599 322 196 0 0 chr6 132943150 132943206 -16573831 + L1_Mur1 LINE L1 559 614 -6370 6 1599 3708 97 43 25 chr6 132943220 132943258 -16573779 + L1_Mur1 LINE L1 2996 3029 -2857 6 1599 6691 46 0 1 chr6 132943258 132944071 -16572966 - L1Md_F2 LINE L1 -12 6570 5759 6 1599 6283 116 26 15 chr6 132944071 132945094 -16571943 + L1_Mur1 LINE L1 3030 4069 -1817 6 1599 194 0 39 0 chr6 132945100 132945126 -16571911 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1599 1116 75 7 0 chr6 132945135 132945281 -16571756 - B1_Mm SINE Alu 0 147 1 6 1599 7488 109 15 22 chr6 132945283 132946436 -16570601 + Lx3_Mus LINE L1 5792 6936 -73 6 1599 270 0 0 0 chr6 132946724 132946754 -16570283 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1599 600 59 0 0 chr6 132946754 132946838 -16570199 + (GA)n Simple_repeat Simple_repeat 1 85 0 6 1599 755 270 80 0 chr6 132947524 132947724 -16569313 + B3 SINE B2 1 216 0 6 1599 482 83 14 0 chr6 132948212 132948284 -16568753 + (GGAA)n Simple_repeat Simple_repeat 1 73 0 6 1599 21 36 0 0 chr6 132948894 132948922 -16568115 + AT_rich Low_complexity Low_complexity 1 28 0 6 1599 1303 251 66 61 chr6 132948963 132949387 -16567650 + ORR1D2-int LTR MaLR 939 1364 -6 6 1599 507 328 99 0 chr6 132949393 132949594 -16567443 + ORR1D2 LTR MaLR 1 221 -149 6 1599 264 310 71 112 chr6 132949765 132949961 -16567076 - RMER5 LTR ERV1 -306 228 41 6 1599 27 73 0 0 chr6 132950959 132951014 -16566023 + AT_rich Low_complexity Low_complexity 1 55 0 6 1599 34 0 0 0 chr6 132951408 132951442 -16565595 + AT_rich Low_complexity Low_complexity 1 34 0 6 1599 875 88 22 0 chr6 132951489 132951626 -16565411 + B1_Mus1 SINE Alu 8 147 -1 6 1599 28 29 0 0 chr6 132952859 132952894 -16564143 + AT_rich Low_complexity Low_complexity 1 35 0 6 1599 1131 256 77 50 chr6 132953054 132953211 -16563826 + RMER15 LTR ERVL 230 378 -197 6 1599 189 0 0 0 chr6 132953211 132953232 -16563805 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1599 1131 256 77 50 chr6 132953232 132953411 -16563626 + RMER15 LTR ERVL 379 575 0 6 1599 27 0 0 0 chr6 132954579 132954606 -16562431 + AT_rich Low_complexity Low_complexity 1 27 0 6 1599 324 111 0 0 chr6 132955463 132955517 -16561520 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1599 446 318 101 32 chr6 132955834 132956052 -16560985 + RMER15 LTR ERVL 275 507 -68 6 1599 6214 62 13 2 chr6 132956059 132956854 -16560183 - L1Md_F2 LINE L1 -14 6568 5766 6 1599 2596 127 24 2 chr6 132957318 132957727 -16559310 - L1_Mus3 LINE L1 -6 6632 6215 6 1599 330 26 0 0 chr6 132957727 132957766 -16559271 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1599 871 114 0 0 chr6 132957766 132957889 -16559148 - B1_Mm SINE Alu -8 139 17 6 1599 26308 143 14 12 chr6 132957889 132962839 -16554198 - L1_Mus3 LINE L1 -437 6201 1248 6 1599 24 32 0 0 chr6 132962839 132962870 -16554167 + AT_rich Low_complexity Low_complexity 1 31 0 6 1599 7474 91 9 7 chr6 132962870 132964605 -16552432 - L1_Mus1 LINE L1 -2 6565 4829 6 1599 3849 180 96 25 chr6 132964605 132965441 -16551596 - L1VL2 LINE L1 -5365 970 76 6 1599 265 328 37 45 chr6 132965615 132965749 -16551288 - B1F2 SINE Alu -15 134 2 6 1599 988 166 42 150 chr6 132965819 132966180 -16550857 - RLTRETN_Mm LTR ERVK 0 322 1 6 1599 29 0 0 0 chr6 132966395 132966424 -16550613 + AT_rich Low_complexity Low_complexity 1 29 0 6 1599 22 0 0 0 chr6 132966474 132966496 -16550541 + AT_rich Low_complexity Low_complexity 1 22 0 6 1599 29 0 0 0 chr6 132966765 132966794 -16550243 + AT_rich Low_complexity Low_complexity 1 29 0 6 1599 22 80 0 0 chr6 132966910 132966960 -16550077 + AT_rich Low_complexity Low_complexity 1 50 0 6 1599 23 33 0 0 chr6 132967210 132967240 -16549797 + AT_rich Low_complexity Low_complexity 1 30 0 6 1599 23 0 0 0 chr6 132967929 132967952 -16549085 + AT_rich Low_complexity Low_complexity 1 23 0 6 1599 22 35 0 0 chr6 132968948 132968977 -16548060 + AT_rich Low_complexity Low_complexity 1 29 0 6 1599 24 32 0 0 chr6 132970202 132970233 -16546804 + AT_rich Low_complexity Low_complexity 1 31 0 6 1599 266 376 61 114 chr6 132971187 132971580 -16545457 + MLT1F2 LTR MaLR 19 390 -170 6 1599 270 0 0 0 chr6 132971592 132971622 -16545415 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1599 529 327 61 48 chr6 132971801 132972254 -16544783 + RLTR6-int LTR ERV1 4045 4530 -3026 6 1599 22 0 0 0 chr6 132972399 132972421 -16544616 + AT_rich Low_complexity Low_complexity 1 22 0 6 1599 793 287 21 65 chr6 132972594 132972885 -16544152 + MuRRS4-int LTR ERV1 3545 3822 -1241 6 1599 885 330 18 13 chr6 132972910 132973355 -16543682 + RLTR6-int LTR ERV1 7088 7721 -57 6 1599 1975 113 198 3 chr6 132973439 132973812 -16543225 + RLTR47_MM LTR ERV1 1 446 -86 6 1599 218 118 39 0 chr6 132973813 132973864 -16543173 + A-rich Low_complexity Low_complexity 2 54 0 6 1599 1930 109 11 0 chr6 132973906 132974181 -16542856 - L1_Mus2 LINE L1 -1 6565 6288 6 1599 1172 107 40 0 chr6 132974181 132974358 -16542679 - L1_Mm LINE L1 -756 5127 4944 6 1599 22 0 0 0 chr6 132974893 132974915 -16542122 + AT_rich Low_complexity Low_complexity 1 22 0 6 1599 352 350 43 0 chr6 132974929 132975046 -16541991 - B1F2 SINE Alu -26 123 2 6 1599 42 71 0 0 chr6 132975707 132975791 -16541246 + AT_rich Low_complexity Low_complexity 1 84 0 6 1599 3505 174 44 18 chr6 132976034 132976719 -16540318 - Lx LINE L1 -2 6652 5950 6 1599 7929 181 12 47 chr6 132976723 132978499 -16538538 - L1_Mur2 LINE L1 -1419 4458 2744 6 1599 1964 118 10 64 chr6 132978497 132978886 -16538151 + L1_Mur1 LINE L1 3274 3641 -2245 6 1599 4685 185 33 30 chr6 132978890 132979858 -16537179 - L1_Mur2 LINE L1 -536 5341 4373 6 1599 468 0 0 0 chr6 132979858 132979910 -16537127 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1599 4685 185 33 30 chr6 132979910 132980032 -16537005 - L1_Mur2 LINE L1 -1505 4372 4248 6 1599 9649 128 76 15 chr6 132980013 132980090 -16536947 - L1VL4 LINE L1 -778 2781 2682 6 1599 1389 116 0 5 chr6 132980090 132980307 -16536730 - Lx LINE L1 0 6654 6439 6 1599 9649 130 61 19 chr6 132980307 132982517 -16534520 - L1VL4 LINE L1 -878 2681 399 6 1599 320 239 42 0 chr6 132982656 132982727 -16534310 - HAL1-3A_ME LINE L1 -810 2048 1975 6 1599 251 287 45 98 chr6 132983984 132984096 -16532941 + B2_Mm2 SINE B2 19 124 -71 6 1599 2868 30 24 0 chr6 132984292 132984630 -16532407 + ORR1A0 LTR MaLR 1 346 0 6 1599 246 174 0 0 chr6 132984916 132984962 -16532075 + URR1B DNA MER1_type 180 225 0 6 1599 21 0 0 0 chr6 132985043 132985064 -16531973 + AT_rich Low_complexity Low_complexity 1 21 0 6 1599 28 48 0 0 chr6 132987723 132987765 -16529272 + AT_rich Low_complexity Low_complexity 1 42 0 6 1599 22 0 0 0 chr6 132987895 132987917 -16529120 + AT_rich Low_complexity Low_complexity 1 22 0 6 1599 268 314 45 62 chr6 132988283 132988395 -16528642 + PB1D10 SINE Alu 6 115 -2 6 1599 270 0 0 0 chr6 132988417 132988447 -16528590 + (CAA)n Simple_repeat Simple_repeat 2 31 0 6 1599 363 22 22 0 chr6 132988509 132988555 -16528482 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 6 1599 678 122 0 0 chr6 132988555 132988662 -16528375 + (GAAA)n Simple_repeat Simple_repeat 1 107 0 6 1599 5288 152 28 13 chr6 132988831 132989814 -16527223 + Lx3_Mus LINE L1 6012 7008 -1 6 1599 276 30 0 0 chr6 132990138 132990171 -16526866 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1599 466 286 84 17 chr6 132990375 132990613 -16526424 + L1_Mur3 LINE L1 3723 3976 -1904 6 1599 3735 101 11 14 chr6 132990846 132991397 -16525640 + Lx2 LINE L1 6440 6988 -9 6 1599 803 292 59 50 chr6 132992063 132992475 -16524562 + RLTR26 LTR ERVK 2 463 -179 6 1599 736 239 23 23 chr6 132992718 132992932 -16524105 - B3 SINE B2 0 216 3 6 1599 243 0 0 0 chr6 132993717 132993744 -16523293 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1599 756 323 4 15 chr6 132994113 132994383 -16522654 + Lx6 LINE L1 7168 7434 -26 6 1599 1514 83 39 58 chr6 132994398 132994655 -16522382 + L1Md_F2 LINE L1 6328 6579 -3 6 1599 3892 53 2 6 chr6 132994850 132995345 -16521692 - L1Md_F2 LINE L1 -3 6579 6087 6 1599 9875 27 1 4 chr6 132996154 132998012 -16519025 - L1Md_T LINE L1 -1 6581 4731 6 1599 201 196 0 0 chr6 132998806 132998852 -16518185 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1599 256 311 150 13 chr6 132998936 132999089 -16517948 + Lx9 LINE L1 7106 7279 -365 6 1599 21 0 0 0 chr6 132999293 132999314 -16517723 + AT_rich Low_complexity Low_complexity 1 21 0 6 1599 779 18 18 0 chr6 132999389 132999500 -16517537 - L1Md_F2 LINE L1 -3 6579 6467 6 1599 1012 167 5 26 chr6 132999515 132999706 -16517331 + L1VL1 LINE L1 14 200 -6222 6 1599 235 176 65 21 chr6 132999736 132999829 -16517208 + (TAGA)n Simple_repeat Simple_repeat 1 97 0 6 1599 8298 136 11 11 chr6 133000176 133002454 -16514583 + Lx3C LINE L1 4701 6974 -2 1 1599 1175 7 0 14 chr6 133002460 133002562 -16514475 + (GAA)n Simple_repeat Simple_repeat 2 102 0 2 1599 1452 44 0 0 chr6 133002562 133002742 -16514295 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 1599 1175 7 0 14 chr6 133002742 133002780 -16514257 + (GAA)n Simple_repeat Simple_repeat 1 38 0 4 1599 192 40 0 0 chr6 133002781 133002806 -16514231 + (CAA)n Simple_repeat Simple_repeat 1 25 0 5 1599 235 251 39 177 chr6 133003775 133004109 -16512928 + Lx9 LINE L1 7320 7607 -37 6 1599 22 35 0 0 chr6 133004117 133004146 -16512891 + AT_rich Low_complexity Low_complexity 1 29 0 7 1599 333 47 0 0 chr6 133004474 133004517 -16512520 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1599 447 68 0 0 chr6 133004517 133004576 -16512461 + (TA)n Simple_repeat Simple_repeat 1 59 0 9 1599 24 0 0 0 chr6 133006249 133006273 -16510764 + AT_rich Low_complexity Low_complexity 1 24 0 1 1599 279 209 19 5 chr6 133007020 133007084 -16509953 + B1F SINE Alu 51 146 -3 1 1599 398 287 30 23 chr6 133008296 133008428 -16508609 + MTC LTR MaLR 289 421 0 1 1599 16190 73 7 1 chr6 133008475 133010639 -16506398 - L1_Mm LINE L1 -796 5087 2909 1 1599 275 276 22 36 chr6 133010639 133010778 -16506259 + (CATATA)n Simple_repeat Simple_repeat 5 141 0 1 1599 501 62 0 0 chr6 133011073 133011138 -16505899 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 1 1599 485 232 0 0 chr6 133011217 133011312 -16505725 - RLTR22_Mus LTR ERVK -2 1320 1226 1 1599 1915 275 131 88 chr6 133011483 133013058 -16503979 - RLTR22_Mus LTR ERVK -251 1557 1 1 1599 978 257 15 31 chr6 133013058 133013413 -16503624 - L1_Mur3 LINE L1 -7054 658 86 1 1599 257 268 0 0 chr6 133013420 133013491 -16503546 - L1_Rod LINE L1 -4272 1575 1505 1 1599 211 47 93 0 chr6 133013504 133013547 -16503490 + (TTTTTG)n Simple_repeat Simple_repeat 5 51 0 1 1599 585 28 0 0 chr6 133014252 133014323 -16502714 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1599 768 295 5 0 chr6 133015192 133015399 -16501638 - B3 SINE B2 -8 208 1 2 1599 507 253 174 19 chr6 133015581 133015742 -16501295 + ORR1D1 LTR MaLR 3 188 -186 2 1599 387 0 0 0 chr6 133015751 133015794 -16501243 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1599 285 304 61 33 chr6 133016781 133016995 -16500042 + IAPEy-int LTR ERVK 3055 3291 -4222 2 1599 25 0 0 0 chr6 133018718 133018743 -16498294 + AT_rich Low_complexity Low_complexity 1 25 0 2 1599 472 305 16 0 chr6 133018907 133019035 -16498002 + B1_Mur1 SINE Alu 18 147 -2 2 1599 237 191 10 31 chr6 133019040 133019137 -16497900 + GA-rich Low_complexity Low_complexity 1 95 0 2 1599 282 56 0 0 chr6 133019636 133019672 -16497365 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1599 4126 213 48 17 chr6 133019696 133020363 -16496674 - Lx2B LINE L1 -3 6997 6306 2 1599 2938 67 51 0 chr6 133020363 133020754 -16496283 - RLTR10A LTR ERVK 0 411 1 3 1599 4126 213 48 17 chr6 133020754 133021042 -16495995 - Lx2B LINE L1 -695 6305 6012 2 1599 2887 228 15 111 chr6 133021040 133021194 -16495843 + Lx3B LINE L1 5098 5249 -629 3 1599 620 62 0 0 chr6 133021194 133021274 -16495763 + B2_Mm2 SINE B2 2 81 -114 3 1599 2176 26 100 0 chr6 133021285 133021555 -16495482 + L1Md_F2 LINE L1 6284 6580 -2 3 1599 3663 150 5 2 chr6 133021555 133022269 -16494768 + Lx3B LINE L1 5252 5979 -994 3 1599 2339 307 106 33 chr6 133022366 133022439 -16494598 + Lx9 LINE L1 6260 6337 -1307 3 1599 438 127 0 0 chr6 133022439 133022510 -16494527 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1599 2339 307 106 33 chr6 133022510 133023698 -16493339 + Lx9 LINE L1 6338 7612 -32 3 1599 9275 97 48 3 chr6 133023710 133024751 -16492286 - Lx3_Mus LINE L1 0 7009 5910 3 1599 566 51 13 0 chr6 133024751 133024829 -16492208 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 3 1599 9275 100 36 2 chr6 133024829 133025364 -16491673 - Lx3_Mus LINE L1 -1100 5909 5370 3 1599 556 126 11 0 chr6 133026247 133026348 -16490689 - Lx LINE L1 -606 6030 5929 3 1599 2939 120 150 44 chr6 133026344 133026892 -16490145 + Lx LINE L1 6042 6647 -7 3 1599 1125 80 0 0 chr6 133026973 133027189 -16489848 + (TC)n Simple_repeat Simple_repeat 1 216 0 3 1599 449 71 14 0 chr6 133027731 133027801 -16489236 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 1599 215 346 111 0 chr6 133027808 133027889 -16489148 - RSINE1 SINE B4 -13 152 63 4 1599 388 206 353 6 chr6 133028024 133028180 -16488857 + B3 SINE B2 1 210 -6 4 1599 28 0 0 0 chr6 133028543 133028571 -16488466 + AT_rich Low_complexity Low_complexity 1 28 0 4 1599 963 164 112 19 chr6 133028928 133029133 -16487904 + URR1A DNA MER1_type 1 224 -2 4 1599 597 329 22 13 chr6 133029550 133029781 -16487256 - RMER15 LTR ERVL -52 523 291 4 1599 22388 57 239 10 chr6 133029797 133034406 -16482631 - L1Md_F2 LINE L1 -2 6580 928 4 1599 1262 175 180 14 chr6 133034404 133034682 -16482355 - L1Md_F2 LINE L1 -5987 629 306 4 1599 418 198 19 38 chr6 133034678 133034783 -16482254 - L1Md_F LINE L1 -5986 533 431 4 1599 332 318 51 43 chr6 133034995 133035133 -16481904 + MTE2b LTR MaLR 1 139 -240 4 1599 622 209 75 44 chr6 133035104 133035280 -16481757 - RMER17A LTR ERVK -82 807 636 4 1599 2476 99 25 13 chr6 133035257 133035654 -16481383 - RMER17A LTR ERVK -349 402 1 4 1599 414 0 0 0 chr6 133035657 133035703 -16481334 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1599 22 35 0 0 chr6 133035720 133035749 -16481288 + AT_rich Low_complexity Low_complexity 1 29 0 5 1599 2354 185 11 32 chr6 133036689 133037153 -16479884 - RMER4A LTR ERVK -3 463 10 5 1600 195 114 0 0 chr6 133038160 133038195 -16478842 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1600 243 333 69 43 chr6 133039005 133039121 -16477916 + PB1D7 SINE Alu 1 119 -1 5 1600 686 367 22 14 chr6 133039945 133040310 -16476727 + Lx8 LINE L1 6843 7210 -263 5 1600 197 59 18 73 chr6 133040327 133040382 -16476655 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 5 1600 29 0 0 0 chr6 133040579 133040608 -16476429 + AT_rich Low_complexity Low_complexity 1 29 0 5 1600 4379 173 14 38 chr6 133040840 133041677 -16475360 + RMER13B LTR ERVK 5 821 -87 5 1600 342 0 0 0 chr6 133041915 133041953 -16475084 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1600 651 298 0 0 chr6 133043408 133043559 -16473478 - MER58B DNA MER1_type -19 322 172 6 1600 197 65 32 0 chr6 133045904 133045935 -16471102 + (TTCTC)n Simple_repeat Simple_repeat 1 32 0 6 1600 1076 89 7 0 chr6 133048331 133048477 -16468560 + B1_Mus1 SINE Alu 1 147 -1 6 1600 212 184 0 0 chr6 133048622 133048660 -16468377 + A-rich Low_complexity Low_complexity 1 38 0 6 1600 369 0 0 0 chr6 133049114 133049155 -16467882 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 1600 5779 127 84 0 chr6 133049454 133050396 -16466641 + Lx LINE L1 5631 6651 -3 6 1600 2613 233 8 8 chr6 133050395 133050923 -16466114 - Lx5 LINE L1 -190 6860 6333 6 1600 326 304 94 37 chr6 133050991 133051182 -16465855 + L1M5 LINE L1 4890 5091 -1055 6 1600 366 200 15 15 chr6 133051187 133051253 -16465784 - B1F SINE Alu -76 73 8 6 1600 283 245 16 49 chr6 133051189 133051274 -16465763 - ID_B1 SINE B4 -75 149 71 6 1600 719 285 102 56 chr6 133051376 133052004 -16465033 - L1_Mur3 LINE L1 -1950 3930 3274 7 1600 24 0 0 0 chr6 133052465 133052489 -16464548 + AT_rich Low_complexity Low_complexity 1 24 0 7 1600 186 288 16 48 chr6 133055116 133055178 -16461859 + L4 LINE RTE 375 434 -1595 7 1600 25 0 0 0 chr6 133056701 133056726 -16460311 + AT_rich Low_complexity Low_complexity 1 25 0 7 1600 23 0 0 0 chr6 133056961 133056984 -16460053 + AT_rich Low_complexity Low_complexity 1 23 0 7 1600 195 42 0 0 chr6 133057197 133057221 -16459816 - MER5B DNA MER1_type -124 54 31 7 1600 23 0 0 0 chr6 133057297 133057320 -16459717 + AT_rich Low_complexity Low_complexity 1 23 0 7 1600 335 333 0 8 chr6 133057604 133057722 -16459315 + PB1D10 SINE Alu 1 117 0 7 1600 273 360 38 3 chr6 133057866 133057980 -16459057 - B1F2 SINE Alu -21 128 10 7 1600 891 285 54 19 chr6 133058195 133058453 -16458584 + B4 SINE B4 5 271 -21 7 1600 661 264 56 48 chr6 133058542 133058773 -16458264 - Lx8 LINE L1 -259 7214 6982 8 1600 259 344 69 23 chr6 133058955 133059086 -16457951 + B1F SINE Alu 3 139 -10 8 1600 556 188 34 24 chr6 133059743 133059886 -16457151 + B3 SINE B2 3 211 -5 8 1600 1108 281 33 13 chr6 133060639 133060946 -16456091 + MTE2a LTR MaLR 45 357 -22 8 1600 374 143 33 14 chr6 133062191 133062292 -16454745 - L1_Mus4 LINE L1 -1133 5917 5813 8 1600 769 167 39 34 chr6 133062304 133062509 -16454528 - MYSERV6-int LTR ERVK -2398 6561 6356 8 1600 7440 75 7 16 chr6 133062516 133063799 -16453238 - L1_Mus2 LINE L1 -1 6565 5294 8 1600 35 54 0 0 chr6 133064719 133064775 -16452262 + AT_rich Low_complexity Low_complexity 1 56 0 8 1600 222 140 0 23 chr6 133064937 133064981 -16452056 + A-rich Low_complexity Low_complexity 2 44 0 8 1600 524 339 23 84 chr6 133065117 133065378 -16451659 + B4A SINE B4 36 280 -12 8 1600 795 48 0 0 chr6 133065409 133065513 -16451524 + (CA)n Simple_repeat Simple_repeat 1 104 0 9 1600 752 50 10 0 chr6 133065545 133065646 -16451391 + (GA)n Simple_repeat Simple_repeat 2 103 0 9 1600 1075 162 10 5 chr6 133067614 133067812 -16449225 - L1_Mus3 LINE L1 -12 6626 6428 9 1600 256 30 0 0 chr6 133067812 133067845 -16449192 + Lx LINE L1 5725 5757 -897 9 1600 868 234 25 17 chr6 133069437 133069688 -16447349 + Lx5 LINE L1 5407 5683 -491 9 1600 360 0 0 0 chr6 133069901 133069941 -16447096 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1600 513 104 0 0 chr6 133069944 133070021 -16447016 + (TA)n Simple_repeat Simple_repeat 1 77 0 9 1600 1573 233 151 10 chr6 133070040 133070556 -16446481 + Lx5 LINE L1 5666 6254 -796 9 1600 790 294 40 0 chr6 133070558 133070786 -16446251 + Lx5 LINE L1 6814 7050 0 9 1600 27 0 0 0 chr6 133071466 133071493 -16445544 + AT_rich Low_complexity Low_complexity 1 27 0 9 1600 229 354 10 0 chr6 133071879 133071975 -16445062 + L1_Mur3 LINE L1 53 149 -7579 9 1600 1581 295 35 48 chr6 133071981 133072776 -16444261 + L1_Mur3 LINE L1 474 1258 -6470 9 1600 3187 244 152 9 chr6 133072778 133073884 -16443153 + Lx3C LINE L1 5717 6981 0 9 1600 1340 268 90 14 chr6 133073878 133074502 -16442535 + L1_Mur3 LINE L1 1257 1927 -3953 9 1600 207 100 0 0 chr6 133074765 133074795 -16442242 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1600 534 210 20 53 chr6 133075039 133075190 -16441847 + L1_Mur3 LINE L1 4655 4800 -1080 9 1600 1372 213 51 3 chr6 133075190 133075524 -16441513 - L1_Mur2 LINE L1 -576 5301 4952 1 1600 2740 146 53 2 chr6 133075607 133075847 -16441190 - L1_Mus3 LINE L1 -4 6634 6371 1 1600 480 18 0 0 chr6 133075847 133075904 -16441133 + (ATTTG)n Simple_repeat Simple_repeat 3 59 0 1 1600 2740 146 53 2 chr6 133075904 133076136 -16440901 - L1_Mus3 LINE L1 -268 6370 6139 1 1600 598 371 18 0 chr6 133076507 133076677 -16440360 + B3 SINE B2 2 174 -42 1 1600 27 0 0 0 chr6 133077084 133077111 -16439926 + AT_rich Low_complexity Low_complexity 1 27 0 1 1600 598 154 0 9 chr6 133077304 133077409 -16439628 + Lx3B LINE L1 5689 5792 -1181 1 1600 243 333 27 11 chr6 133077410 133077432 -16439605 - Lx9 LINE L1 -141 7503 7479 1 1600 567 0 0 0 chr6 133077432 133077495 -16439542 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 1 1600 243 333 27 11 chr6 133077495 133077660 -16439377 - Lx9 LINE L1 -166 7478 7314 1 1600 322 298 28 60 chr6 133077693 133077943 -16439094 - L1_Mur3 LINE L1 -4198 1682 1441 1 1600 1940 117 51 81 chr6 133077964 133078336 -16438701 - L1_Mus4 LINE L1 -2 6634 6274 1 1600 450 0 0 0 chr6 133078506 133078556 -16438481 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1600 7110 179 28 19 chr6 133078575 133079946 -16437091 + Lx3B LINE L1 5587 6969 -4 1 1600 237 65 0 0 chr6 133079953 133079984 -16437053 + (ATG)n Simple_repeat Simple_repeat 3 33 0 1 1600 243 152 0 0 chr6 133080062 133080108 -16436929 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1600 23 0 0 0 chr6 133080930 133080953 -16436084 + AT_rich Low_complexity Low_complexity 1 23 0 1 1600 21 0 0 0 chr6 133082721 133082742 -16434295 + AT_rich Low_complexity Low_complexity 1 21 0 1 1600 850 179 70 5 chr6 133082742 133082927 -16434110 + Lx5 LINE L1 5473 5669 -208 1 1600 1284 244 40 36 chr6 133083138 133083558 -16433479 + Lx5 LINE L1 5666 6087 -963 1 1600 240 267 0 0 chr6 133083607 133083667 -16433370 + Lx5 LINE L1 6189 6248 -802 1 1600 729 278 51 5 chr6 133083680 133083897 -16433140 + Lx5 LINE L1 6820 7046 -4 1 1600 28 0 0 0 chr6 133084600 133084628 -16432409 + AT_rich Low_complexity Low_complexity 1 28 0 1 1600 201 132 0 0 chr6 133084840 133084878 -16432159 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1600 355 305 9 0 chr6 133085032 133085137 -16431900 + L1_Mur3 LINE L1 28 133 -7579 1 1600 1720 299 45 42 chr6 133085145 133085923 -16431114 + L1_Mur3 LINE L1 460 1239 -6473 1 1600 1890 57 0 12 chr6 133086144 133086393 -16430644 - L1Md_F3 LINE L1 -2 6582 6337 1 1600 246 344 10 0 chr6 133086428 133086524 -16430513 + L1_Mur3 LINE L1 53 149 -7579 1 1600 1973 281 67 15 chr6 133086526 133087276 -16429761 + L1_Mur3 LINE L1 470 1258 -6470 1 1600 3099 259 145 8 chr6 133087283 133088388 -16428649 + Lx3C LINE L1 5721 6976 0 1 1600 596 191 14 0 chr6 133088367 133088508 -16428529 + L1_Mur3 LINE L1 1237 1379 -4501 1 1600 1366 250 95 14 chr6 133088655 133089275 -16427762 + L1_Mur3 LINE L1 1258 1927 -3953 1 1600 279 79 0 0 chr6 133090181 133090219 -16426818 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1600 27 29 0 0 chr6 133090708 133090742 -16426295 + AT_rich Low_complexity Low_complexity 1 34 0 1 1600 24 32 0 0 chr6 133091435 133091466 -16425571 + AT_rich Low_complexity Low_complexity 1 31 0 1 1600 23 33 0 0 chr6 133091988 133092018 -16425019 + AT_rich Low_complexity Low_complexity 1 30 0 1 1600 342 0 0 0 chr6 133092259 133092297 -16424740 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1600 730 158 53 0 chr6 133093154 133093287 -16423750 - B1_Mus1 SINE Alu -1 147 8 1 1600 24 53 0 0 chr6 133093451 133093489 -16423548 + AT_rich Low_complexity Low_complexity 1 38 0 1 1600 413 288 51 48 chr6 133093669 133093968 -16423069 + L1MA5A LINE L1 5782 6119 -178 1 1600 597 239 44 140 chr6 133094061 133094172 -16422865 - RLTR12A LTR ERVK 0 568 454 1 1600 1006 91 7 0 chr6 133094172 133094315 -16422722 + B1_Mus1 SINE Alu 2 145 -3 1 1600 597 239 44 140 chr6 133094315 133094432 -16422605 - RLTR12A LTR ERVK -115 453 362 1 1600 943 282 51 26 chr6 133094504 133094817 -16422220 - Lx5 LINE L1 -47 7003 6683 1 1600 3522 126 72 13 chr6 133095216 133095827 -16421210 + Lx3_Mus LINE L1 6363 7009 0 1 1600 26 30 0 0 chr6 133095827 133095860 -16421177 + AT_rich Low_complexity Low_complexity 1 33 0 1 1600 423 162 0 0 chr6 133096633 133096713 -16420324 + CT-rich Low_complexity Low_complexity 2 81 0 1 1600 257 323 58 34 chr6 133097159 133097364 -16419673 + RLTR15 LTR ERVK 132 341 -18 1 1600 3464 183 31 3 chr6 133097660 133098328 -16418709 - Lx LINE L1 -398 5485 4799 1 1600 6403 135 37 17 chr6 133098327 133099452 -16417585 + Lx LINE L1 5510 6654 0 1 1600 194 0 0 37 chr6 133099616 133099643 -16417394 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1600 311 286 97 40 chr6 133100383 133100507 -16416530 + RMER4A LTR ERVK 309 439 -27 1 1600 3441 216 92 46 chr6 133100524 133100908 -16416129 + MYSERV6-int LTR ERVK 7768 8171 -788 1 1600 584 27 14 0 chr6 133100908 133100982 -16416055 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 1 1600 3441 216 92 46 chr6 133100982 133101736 -16415301 + MYSERV6-int LTR ERVK 8172 8959 0 1 1600 780 204 6 17 chr6 133101972 133102151 -16414886 + RLTR15 LTR ERVK 158 334 -25 1 1600 700 191 20 0 chr6 133102183 133102330 -16414707 + L1_Mur3 LINE L1 4656 4805 -1075 1 1600 2213 178 26 2 chr6 133102330 133102798 -16414239 - L1_Mur2 LINE L1 -580 5297 4819 1 1600 1842 211 46 92 chr6 133102801 133103408 -16413629 + L1_Mur2 LINE L1 3374 3952 -1925 1 1600 4216 103 20 2 chr6 133103408 133104020 -16413017 - L1_Mus3 LINE L1 -6 6632 6010 1 1600 402 21 0 0 chr6 133104085 133104132 -16412905 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 1 1600 962 136 0 0 chr6 133104133 133104273 -16412764 - B1_Mus1 SINE Alu -7 141 2 1 1600 8507 123 9 1 chr6 133104335 133106456 -16410581 - L1_Mus1 LINE L1 0 6567 4426 1 1600 360 211 43 9 chr6 133106488 133106539 -16410498 - Lx9 LINE L1 0 7644 7591 1 1600 684 254 0 111 chr6 133106539 133106791 -16410246 - URR1A DNA MER1_type 0 226 3 1 1600 360 211 43 9 chr6 133106791 133106854 -16410183 - Lx9 LINE L1 -54 7590 7526 1 1600 308 240 0 0 chr6 133106892 133106967 -16410070 + Lx9 LINE L1 7378 7452 -192 1 1600 510 250 16 106 chr6 133107168 133107404 -16409633 - MT2A LTR ERVL -56 545 347 1 1600 325 314 23 23 chr6 133107737 133107825 -16409212 + RSINE1 SINE B4 78 165 0 1 1600 312 133 0 110 chr6 133108179 133108297 -16408740 + T-rich Low_complexity Low_complexity 2 106 0 1 1600 932 140 7 0 chr6 133108301 133108444 -16408593 - B1_Mus1 SINE Alu -3 145 2 1 1600 25 0 0 0 chr6 133108449 133108474 -16408563 + AT_rich Low_complexity Low_complexity 1 25 0 1 1600 200 132 26 0 chr6 133108522 133108560 -16408477 + A-rich Low_complexity Low_complexity 3 41 0 1 1600 3695 135 11 6 chr6 133110267 133111077 -16405960 - Lx2 LINE L1 -812 6185 5368 1 1600 414 316 94 75 chr6 133111099 133111578 -16405459 + Lx9 LINE L1 6883 7370 -274 1 1600 2255 177 14 2 chr6 133111578 133111992 -16405045 + Lx LINE L1 6221 6639 -15 1 1600 423 0 0 0 chr6 133111992 133112039 -16404998 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1600 375 78 0 0 chr6 133112125 133112176 -16404861 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1600 1389 213 25 47 chr6 133112178 133112543 -16404494 - RLTR15 LTR ERVK 0 359 3 1 1600 1649 271 58 22 chr6 133112722 133113400 -16403637 - MYSERV-int LTR ERVK -192 6358 5657 1 1600 243 0 0 0 chr6 133113462 133113489 -16403548 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1600 685 110 0 0 chr6 133113489 133113580 -16403457 - B1_Mus2 SINE Alu -10 137 47 1 1600 249 245 117 87 chr6 133113522 133113625 -16403412 - RLTR25B LTR ERVK -519 509 404 1 1600 534 268 60 65 chr6 133113710 133114077 -16402960 - MYSERV16_I-int LTR ERVK -1060 1266 902 1 1600 21134 120 67 37 chr6 133114186 133117056 -16399981 - L1Md_F2 LINE L1 0 6582 3715 1 1600 279 0 0 0 chr6 133117056 133117087 -16399950 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 1600 1331 38 0 0 chr6 133117087 133117247 -16399790 - B2_Mm1a SINE B2 -33 160 1 1 1600 21134 142 87 51 chr6 133117247 133119979 -16397058 - L1Md_F2 LINE L1 -2169 3714 575 1 1600 687 25 0 0 chr6 133119979 133120060 -16396977 + (CCCTAA)n Simple_repeat Simple_repeat 2 82 0 1 1600 2252 245 83 34 chr6 133120060 133120239 -16396798 - L1Md_F2 LINE L1 -6042 574 395 1 1600 902 335 63 61 chr6 133120249 133121193 -16395844 - Lx5 LINE L1 -199 7261 5937 1 1600 766 127 0 8 chr6 133122703 133122830 -16394207 + L1Md_F2 LINE L1 6445 6570 -12 1 1600 255 93 0 0 chr6 133122874 133122917 -16394120 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1600 1047 119 42 0 chr6 133123438 133123606 -16393431 - L1_Mus1 LINE L1 -1 6566 6392 1 1600 1494 188 35 6 chr6 133124130 133124473 -16392564 + L1_Mur1 LINE L1 5248 5600 -286 1 1600 3043 250 35 28 chr6 133124470 133125923 -16391114 - L1_Mur3 LINE L1 -4112 1768 304 1 1600 429 272 32 0 chr6 133125933 133126058 -16390979 + Lx6 LINE L1 7223 7351 -109 1 1600 1993 194 13 8 chr6 133126314 133126698 -16390339 - ORR1B1 LTR MaLR -8 386 1 1 1600 338 108 0 0 chr6 133126800 133126865 -16390172 - Lx3_Mus LINE L1 0 7009 6945 1 1600 4655 172 25 3 chr6 133128134 133128395 -16388642 + L1_Mus4 LINE L1 4972 5248 -635 1 1600 185 0 0 39 chr6 133128395 133128421 -16388616 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 1600 6962 121 12 4 chr6 133128421 133129803 -16387234 + L1_Mus4 LINE L1 5249 6635 -1 1 1600 234 150 0 0 chr6 133129916 133129956 -16387081 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1600 485 94 12 0 chr6 133130126 133130211 -16386826 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 1600 225 178 0 0 chr6 133130390 133130435 -16386602 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1600 699 265 48 117 chr6 133130504 133130942 -16386095 + RLTR20A LTR ERVK 56 434 -107 1 1600 414 0 0 0 chr6 133130949 133130995 -16386042 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1600 453 81 0 0 chr6 133130995 133131057 -16385980 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 1600 3901 165 31 19 chr6 133131869 133132555 -16384482 - ETnERV2-int LTR ERVK -219 7187 6494 1 1600 1241 308 11 13 chr6 133132663 133133133 -16383904 - RNERVK23-int LTR ERVK -469 7748 7280 1 1600 402 347 54 56 chr6 133132664 133133186 -16383851 - MuRRS4-int LTR ERV1 -177 4886 4366 1 1600 277 220 0 0 chr6 133133989 133134048 -16382989 - RLTR6-int LTR ERV1 -1543 6235 6177 1 1600 346 191 33 33 chr6 133134000 133134092 -16382945 - RNERVK23-int LTR ERVK -1891 6326 6235 1 1600 1395 324 49 52 chr6 133134564 133135993 -16381044 - RNERVK23-int LTR ERVK -2477 5740 4316 1 1600 646 299 20 20 chr6 133136190 133136490 -16380547 - RMER16-int LTR ERVK -3124 2282 1983 1 1600 22 0 0 0 chr6 133136523 133136545 -16380492 + AT_rich Low_complexity Low_complexity 1 22 0 1 1600 463 159 47 0 chr6 133136560 133136667 -16380370 - Lx3C LINE L1 -2 6974 6863 1 1600 6908 73 0 7 chr6 133136870 133137817 -16379220 - L1Md_F2 LINE L1 -12 6570 5631 2 1600 295 322 7 7 chr6 133137924 133138071 -16378966 - IAPEY3-int LTR ERVK -5299 2381 2235 2 1600 212 104 0 40 chr6 133139192 133139242 -16377795 + (TTTTTG)n Simple_repeat Simple_repeat 4 51 0 2 1600 1143 62 7 0 chr6 133139245 133139390 -16377647 - B1_Mm SINE Alu -1 146 1 2 1600 189 189 75 0 chr6 133141143 133141196 -16375841 + L3 LINE CR1 1352 1408 -3081 2 1600 789 84 0 0 chr6 133141489 133141608 -16375429 + (GA)n Simple_repeat Simple_repeat 2 120 0 2 1600 3817 185 23 7 chr6 133141984 133142681 -16374356 - ETnERV3-int LTR ERVK -204 7202 6495 2 1600 754 267 14 5 chr6 133142734 133143067 -16373970 - ETnERV3-int LTR ERVK -469 7748 7506 2 1600 4344 183 71 63 chr6 133143056 133144313 -16372724 - ETnERV3-int LTR ERVK -420 5388 4122 2 1600 3931 137 30 13 chr6 133144319 133145012 -16372025 - ETnERV2-int LTR ERVK -3135 4271 3567 2 1600 550 222 8 0 chr6 133145038 133145155 -16371882 - ETnERV2-int LTR ERVK -4653 2753 2636 2 1600 298 233 0 65 chr6 133145168 133145260 -16371777 - ETnERV2-int LTR ERVK -4867 2539 2454 2 1600 472 185 130 0 chr6 133145273 133145381 -16371656 - RMER16-int LTR ERVK -5077 1060 939 2 1600 1608 204 142 47 chr6 133145387 133145612 -16371425 - RMER16-int LTR ERVK -4587 819 572 2 1600 3115 31 0 0 chr6 133145612 133145966 -16371071 + IAPEY2_LTR LTR ERVK 1 354 -3 2 1600 1608 204 142 47 chr6 133145966 133146269 -16370768 - RMER16-int LTR ERVK -4835 571 241 2 1600 454 292 46 8 chr6 133146832 133146963 -16370074 - ETnERV2-int LTR ERVK -204 7202 7067 2 1600 438 94 0 0 chr6 133146963 133147027 -16370010 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 1600 7738 174 120 12 chr6 133147683 133150190 -16366847 + L1_Mus4 LINE L1 1399 4576 -1310 2 1600 432 67 0 0 chr6 133150190 133150250 -16366787 + (TAA)n Simple_repeat Simple_repeat 1 60 0 2 1600 6268 194 175 10 chr6 133150250 133151438 -16365599 + L1_Mus4 LINE L1 4577 5968 -668 2 1600 1797 292 36 26 chr6 133151465 133152412 -16364625 - L1_Rod LINE L1 -97 5750 4795 2 1600 5611 108 10 8 chr6 133152451 133153303 -16363734 - L1_Mus3 LINE L1 0 6638 5795 2 1600 512 212 0 0 chr6 133153306 133153391 -16363646 - B2_Mm2 SINE B2 -108 87 3 2 1600 258 286 68 34 chr6 133153402 133153608 -16363429 - L1_Mm LINE L1 -1361 4522 4305 2 1600 198 0 0 0 chr6 133153619 133153641 -16363396 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1600 454 234 31 13 chr6 133153724 133153888 -16363149 + Lx9 LINE L1 5800 5968 -1676 2 1600 203 273 76 0 chr6 133154266 133154332 -16362705 + MIRb SINE MIR 121 191 -77 2 1600 1243 115 14 28 chr6 133154507 133154721 -16362316 - Lx3_Mus LINE L1 -5 7004 6794 2 1600 318 339 68 16 chr6 133154823 133155072 -16361965 + Lx8 LINE L1 6226 6487 -986 2 1600 320 318 39 50 chr6 133155115 133155373 -16361664 + Lx9 LINE L1 6875 7129 -515 2 1600 241 330 78 37 chr6 133155415 133155640 -16361397 + Lx9 LINE L1 7230 7465 -179 2 1600 1952 148 3 58 chr6 133155640 133155985 -16361052 - ORR1A2 LTR MaLR -1 326 1 2 1600 241 330 78 37 chr6 133155985 133156001 -16361036 + Lx9 LINE L1 7466 7481 -163 2 1600 507 204 9 36 chr6 133156002 133156095 -16360942 - RLTR15 LTR ERVK 0 359 270 2 1600 278 340 50 106 chr6 133156095 133156434 -16360603 - RLTR46 LTR ERVK 0 320 1 2 1600 967 196 63 100 chr6 133156434 133156728 -16360309 - RLTR15 LTR ERVK -76 283 1 2 1600 27 0 0 0 chr6 133156749 133156776 -16360261 + AT_rich Low_complexity Low_complexity 1 27 0 2 1600 16685 87 4 1 chr6 133156930 133160254 -16356783 + L1Md_F LINE L1 392 3722 -2161 2 1600 30566 84 2 18 chr6 133160260 133165439 -16351598 + L1Md_F2 LINE L1 493 5584 -299 2 1600 7296 72 15 5 chr6 133165441 133166427 -16350610 + L1Md_F2 LINE L1 5587 6582 0 2 1600 3229 153 156 16 chr6 133167087 133167805 -16349232 + RLTR13D2 LTR ERVK 1 1023 0 2 1600 32 0 0 0 chr6 133167864 133167896 -16349141 + AT_rich Low_complexity Low_complexity 1 32 0 2 1600 213 39 0 0 chr6 133168622 133168648 -16348389 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2 1600 1235 69 0 0 chr6 133168648 133168808 -16348229 - B2_Mm1a SINE B2 -33 160 1 2 1601 468 0 0 0 chr6 133169278 133169330 -16347707 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1601 255 31 0 0 chr6 133169421 133169453 -16347584 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1601 348 358 0 31 chr6 133169719 133169846 -16347191 - Lx8 LINE L1 -208 7265 7143 2 1601 22 35 0 0 chr6 133169901 133169930 -16347107 + AT_rich Low_complexity Low_complexity 1 29 0 2 1601 280 324 86 0 chr6 133169973 133170078 -16346959 - ID_B1 SINE B4 -6 218 105 2 1601 205 133 44 0 chr6 133170968 133171013 -16346024 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1601 432 0 0 0 chr6 133172194 133172242 -16344795 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1601 485 16 16 0 chr6 133172356 133172418 -16344619 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1601 348 358 0 31 chr6 133172686 133172813 -16344224 - Lx8 LINE L1 -208 7265 7143 2 1601 22 35 0 0 chr6 133172868 133172897 -16344140 + AT_rich Low_complexity Low_complexity 1 29 0 2 1601 280 324 86 0 chr6 133172940 133173045 -16343992 - ID_B1 SINE B4 -6 218 105 2 1601 205 133 44 0 chr6 133173935 133173980 -16343057 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1601 282 56 0 0 chr6 133175161 133175197 -16341840 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 1601 449 17 17 0 chr6 133175311 133175369 -16341668 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1601 309 374 0 31 chr6 133175637 133175764 -16341273 - Lx8 LINE L1 -208 7265 7143 2 1601 23 33 0 0 chr6 133175818 133175848 -16341189 + AT_rich Low_complexity Low_complexity 1 30 0 2 1601 290 330 83 0 chr6 133175895 133176004 -16341033 - ID_B1 SINE B4 -2 222 105 2 1601 585 0 0 0 chr6 133176888 133176953 -16340084 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1601 185 108 27 0 chr6 133178161 133178198 -16338839 + (GA)n Simple_repeat Simple_repeat 2 39 0 2 1601 3632 65 6 2 chr6 133178470 133178948 -16338089 + L1Md_F3 LINE L1 6103 6582 -2 2 1601 2474 195 104 11 chr6 133179922 133180690 -16336347 + Lx5 LINE L1 5408 6254 -796 2 1601 467 325 12 19 chr6 133180691 133180851 -16336186 + Lx5 LINE L1 6813 6971 -79 2 1601 2197 214 15 4 chr6 133180866 133181339 -16335698 + Lx5 LINE L1 6497 6974 -2 2 1601 183 42 0 0 chr6 133181357 133181381 -16335656 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1601 465 122 0 0 chr6 133181577 133181651 -16335386 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1601 3579 247 56 18 chr6 133181827 133183379 -16333658 + L1_Mur3 LINE L1 313 1927 -3953 2 1601 276 102 0 0 chr6 133184059 133184108 -16332929 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1601 244 200 18 0 chr6 133184465 133184520 -16332517 - RMER6B LTR ERVK -405 56 1 2 1601 1108 153 22 27 chr6 133184522 133184744 -16332293 - MYSERV6-int LTR ERVK -1194 7765 7545 2 1601 682 239 71 28 chr6 133184744 133184955 -16332082 - MYSERV6-int LTR ERVK -3239 5720 5501 2 1601 483 33 0 0 chr6 133184961 133185022 -16332015 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1601 610 294 43 6 chr6 133185024 133185188 -16331849 - B3 SINE B2 -43 173 4 2 1601 31 0 0 0 chr6 133186908 133186939 -16330098 + AT_rich Low_complexity Low_complexity 1 31 0 2 1601 266 324 92 9 chr6 133187881 133187990 -16329047 + ID_B1 SINE B4 105 222 -2 2 1601 28 29 0 0 chr6 133188024 133188059 -16328978 + AT_rich Low_complexity Low_complexity 1 35 0 2 1601 381 344 0 32 chr6 133188115 133188241 -16328796 + Lx8 LINE L1 7143 7264 -209 2 1601 452 32 16 0 chr6 133188510 133188572 -16328465 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1601 219 114 0 0 chr6 133188659 133188694 -16328343 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1601 859 274 44 19 chr6 133190709 133191025 -16326012 - L1_Rod LINE L1 -95 5752 5429 2 1601 237 65 0 0 chr6 133191031 133191062 -16325975 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1601 5809 135 68 3 chr6 133191076 133192160 -16324877 - L1_Mus3 LINE L1 -7 6631 5477 2 1601 13220 149 10 6 chr6 133192163 133194418 -16322619 - L1_Mm LINE L1 -182 5701 3437 2 1601 6351 126 22 8 chr6 133194418 133195483 -16321554 + MusHAL1 LINE L1 1191 2271 -441 2 1601 1309 309 48 49 chr6 133195529 133196635 -16320402 - L1_Rod LINE L1 -507 5373 4238 2 1601 291 237 3 14 chr6 133196646 133196743 -16320294 + Lx5 LINE L1 5803 5930 -382 2 1601 450 348 52 37 chr6 133197012 133197340 -16319697 + Lx9 LINE L1 6307 6639 -1005 2 1601 195 80 39 39 chr6 133197377 133197429 -16319608 + A-rich Low_complexity Low_complexity 2 53 0 2 1601 22 56 0 0 chr6 133198371 133198407 -16318630 + AT_rich Low_complexity Low_complexity 1 36 0 2 1601 300 220 10 10 chr6 133198495 133198596 -16318441 - L1_Mus3 LINE L1 0 6638 6538 2 1601 341 288 120 0 chr6 133198615 133198740 -16318297 - HAL1-3A_ME LINE L1 -744 2114 1975 2 1601 419 0 0 19 chr6 133199045 133199097 -16317940 + (TAA)n Simple_repeat Simple_repeat 2 52 0 2 1601 954 82 0 0 chr6 133199711 133199857 -16317180 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 2 1601 222 337 0 22 chr6 133199864 133199955 -16317082 + GA-rich Low_complexity Low_complexity 4 92 0 2 1601 2195 204 42 13 chr6 133200643 133201166 -16315871 - L1_Mur2 LINE L1 -94 5783 5246 2 1601 2440 185 44 52 chr6 133201176 133201519 -16315518 - Lx2 LINE L1 0 6997 6643 2 1601 665 56 11 0 chr6 133201519 133201609 -16315428 + (TCC)n Simple_repeat Simple_repeat 3 93 0 2 1601 2440 185 44 52 chr6 133201609 133201624 -16315413 - Lx2 LINE L1 -355 6642 6642 2 1601 3979 99 2 14 chr6 133201624 133202199 -16314838 - L1_Mus1 LINE L1 -1 6566 5999 2 1601 2440 185 44 52 chr6 133202199 133202380 -16314657 - Lx2 LINE L1 -355 6642 6461 2 1601 1988 69 47 0 chr6 133202380 133202654 -16314383 - MTA_Mm LTR MaLR -109 287 1 2 1601 1557 256 69 34 chr6 133202654 133202986 -16314051 + Lx4A LINE L1 6565 6920 -138 2 1601 1788 177 3 16 chr6 133202986 133203301 -16313736 + RLTR10E LTR ERVK 1 311 0 2 1601 1557 256 69 34 chr6 133203301 133203445 -16313592 + Lx4A LINE L1 6921 7058 0 2 1601 1108 333 15 15 chr6 133203990 133204386 -16312651 - Lx5 LINE L1 -5 7045 6650 2 1601 260 280 0 0 chr6 133204431 133204506 -16312531 + L1_Mur1 LINE L1 5179 5253 -633 2 1601 628 215 0 0 chr6 133204673 133204794 -16312243 + Lx2B LINE L1 6537 6657 -343 2 1601 316 108 0 58 chr6 133204794 133204863 -16312174 + T-rich Low_complexity Low_complexity 2 66 0 2 1601 1015 89 0 48 chr6 133204867 133205055 -16311982 + (TTTCC)n Simple_repeat Simple_repeat 2 180 0 2 1601 1775 138 3 3 chr6 133205057 133205356 -16311681 - L1_Mur1 LINE L1 -1251 4635 4337 2 1601 376 213 147 54 chr6 133206461 133206590 -16310447 - Lx4A LINE L1 -2 7056 6916 2 1601 933 205 119 9 chr6 133206601 133206827 -16310210 - Lx4A LINE L1 -626 6432 6182 2 1601 6667 180 29 18 chr6 133206824 133208330 -16308707 - L1_Mur2 LINE L1 -954 4923 3402 2 1601 7136 92 5 3 chr6 133208334 133209629 -16307408 - L1_Mus2 LINE L1 0 6566 5270 2 1601 1492 202 74 24 chr6 133209612 133209879 -16307158 - L1_Mur2 LINE L1 -2445 3432 3139 2 1601 450 0 0 0 chr6 133209879 133209929 -16307108 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1601 1492 202 74 24 chr6 133209929 133210081 -16306956 - L1_Mur2 LINE L1 -2739 3138 2992 2 1601 6063 101 12 0 chr6 133210090 133210943 -16306094 - L1_Mus1 LINE L1 -1 6566 5704 3 1601 287 104 0 0 chr6 133210939 133210987 -16306050 - L1_Mur2 LINE L1 -2873 3004 2957 2 1601 2224 87 120 11 chr6 133210987 133211336 -16305701 - RLTR10 LTR ERVK 0 390 4 3 1601 14309 30 12 0 chr6 133211341 133213004 -16304033 - RLTR10-int LTR ERVK -3 1984 302 3 1601 2203 84 129 11 chr6 133213004 133213353 -16303684 - RLTR10 LTR ERVK 0 390 1 3 1601 1772 166 11 30 chr6 133213353 133213720 -16303317 - L1_Mur2 LINE L1 -2915 2962 2603 2 1601 463 322 42 98 chr6 133213720 133214242 -16302795 - RLTR18B LTR ERVK -135 481 36 3 1601 210 136 0 0 chr6 133214286 133214330 -16302707 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1601 387 0 0 0 chr6 133214330 133214373 -16302664 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1601 336 24 0 0 chr6 133214373 133214413 -16302624 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1601 368 284 25 0 chr6 133214438 133214519 -16302518 - RSINE1 SINE B4 -22 143 61 3 1601 198 0 0 0 chr6 133214545 133214567 -16302470 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 3 1601 835 337 49 27 chr6 133214567 133214641 -16302396 - Lx7 LINE L1 -372 7324 7243 3 1601 1241 238 22 3 chr6 133214641 133214962 -16302075 + ORR1A2 LTR MaLR 1 327 0 3 1601 835 337 49 27 chr6 133214962 133215293 -16301744 - Lx7 LINE L1 -454 7242 6911 3 1601 3518 117 34 4 chr6 133215451 133216010 -16301027 - L1_Mm LINE L1 -946 4937 4362 3 1601 6926 91 7 14 chr6 133216011 133217064 -16299973 + L1_Mus2 LINE L1 5334 6382 -184 3 1601 3271 46 91 11 chr6 133217064 133217504 -16299533 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1601 6926 87 8 17 chr6 133217504 133217689 -16299348 + L1_Mus2 LINE L1 6383 6562 -4 3 1601 426 286 45 53 chr6 133218151 133218284 -16298753 + B1_Mur3 SINE Alu 18 149 0 3 1601 263 293 68 68 chr6 133218950 133219214 -16297823 - Lx9 LINE L1 -1221 6423 6160 3 1601 282 258 42 48 chr6 133219283 133219483 -16297554 - Lx7 LINE L1 -1708 5988 5788 3 1601 2570 278 81 55 chr6 133219496 133219540 -16297497 + L1_Rod LINE L1 4248 4287 -1560 3 1601 2611 111 14 14 chr6 133219540 133219959 -16297078 - BGLII LTR ERVK 0 421 3 3 1601 2570 278 81 55 chr6 133219959 133220892 -16296145 + L1_Rod LINE L1 4288 5238 -609 3 1601 5214 126 10 73 chr6 133220892 133221854 -16295183 + RLTR13D6 LTR ERVK 1 902 0 3 1601 2570 278 81 55 chr6 133221854 133222344 -16294693 + L1_Rod LINE L1 5239 5755 -92 3 1601 1269 214 41 36 chr6 133225213 133225799 -16291238 + RLTR11A LTR ERVK 1 528 0 3 1601 1024 125 0 0 chr6 133225831 133225991 -16291046 - RLTR11B LTR ERVK -4 449 290 3 1601 216 0 0 0 chr6 133226381 133226405 -16290632 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 1601 1106 59 0 0 chr6 133226405 133226540 -16290497 - B1_Mus1 SINE Alu -13 135 1 3 1601 1942 317 73 45 chr6 133226621 133227836 -16289201 - Lx6 LINE L1 -28 7432 5934 3 1601 351 312 9 35 chr6 133228336 133228449 -16288588 - RSINE1 SINE B4 0 165 56 3 1601 2575 221 3 32 chr6 133228592 133229213 -16287824 + MYSERV6-int LTR ERVK 480 1082 -7877 3 1601 721 164 23 8 chr6 133229214 133229343 -16287694 + Lx LINE L1 6073 6203 -451 3 1601 1004 143 74 0 chr6 133229319 133229494 -16287543 + Lx LINE L1 6340 6527 -127 3 1601 2868 69 8 5 chr6 133229494 133229873 -16287164 + MTA_Mm LTR MaLR 15 394 -2 3 1601 6956 94 50 8 chr6 133229875 133230928 -16286109 + MTA_Mm-int LTR MaLR 1 1098 0 3 1601 2934 91 5 2 chr6 133230928 133231323 -16285714 + MTA_Mm LTR MaLR 1 396 0 3 1601 2169 198 17 44 chr6 133231336 133231859 -16285178 + MYSERV6-int LTR ERVK 1794 2302 -6657 3 1601 588 182 104 7 chr6 133231847 133231991 -16285046 + MYSERV6-int LTR ERVK 4468 4625 -4334 3 1601 9479 157 128 9 chr6 133231999 133234245 -16282792 + Lx LINE L1 3519 6073 -581 3 1601 337 210 99 0 chr6 133235452 133235533 -16281504 + RLTR11A LTR ERVK 361 449 -78 3 1601 501 174 11 11 chr6 133235556 133235649 -16281388 + RLTR11A LTR ERVK 434 526 -2 3 1601 338 258 2 13 chr6 133236248 133236335 -16280702 + B1_Mur1 SINE Alu 33 120 -30 3 1601 285 215 98 45 chr6 133236538 133236650 -16280387 + MYSERV6-int LTR ERVK 6538 6655 -2304 3 1601 404 316 24 57 chr6 133237114 133237238 -16279799 + B1_Mur1 SINE Alu 24 143 -6 3 1601 1194 262 20 19 chr6 133237410 133237800 -16279237 + MYSERV16_I-int LTR ERVK 1 372 -1954 3 1601 2014 239 45 15 chr6 133237800 133238267 -16278770 - RMER12B LTR ERVK -923 481 1 3 1601 274 344 0 0 chr6 133238970 133239066 -16277971 + GA-rich Low_complexity Low_complexity 1 96 0 3 1601 216 0 0 0 chr6 133239182 133239206 -16277831 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 1601 193 229 61 76 chr6 133239271 133239337 -16277700 + MIRc SINE MIR 114 178 -90 3 1601 313 317 34 47 chr6 133240259 133240407 -16276630 - Lx8 LINE L1 -1043 6601 6314 3 1601 234 0 0 0 chr6 133241285 133241311 -16275726 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1601 1050 95 0 0 chr6 133241415 133241562 -16275475 + B1_Mm SINE Alu 1 147 0 3 1601 371 84 0 40 chr6 133241562 133241636 -16275401 + (A)n Simple_repeat Simple_repeat 1 71 0 3 1601 909 295 46 30 chr6 133241674 133242041 -16274996 + L1_Rod LINE L1 5378 5750 -97 3 1601 411 172 0 11 chr6 133246274 133246368 -16270669 - Lx LINE L1 -7 6647 6555 3 1601 5689 119 23 0 chr6 133246387 133247288 -16269749 - L1VL4 LINE L1 -907 2652 1731 3 1601 2858 158 20 18 chr6 133247290 133248173 -16268864 - RLTR13C1 LTR ERVK 0 983 1 3 1601 5471 136 7 2 chr6 133248173 133249780 -16267257 - L1VL4 LINE L1 -1825 1734 119 3 1601 4963 78 4 18 chr6 133249781 133250509 -16266528 - L1Md_F2 LINE L1 0 6582 5895 3 1601 2559 156 164 25 chr6 133251380 133252031 -16265006 - L1Md_F LINE L1 -5413 1201 502 3 1601 6272 107 13 6 chr6 133252031 133252928 -16264109 - L1VL1 LINE L1 -5518 904 1 3 1601 29 28 0 0 chr6 133252928 133252964 -16264073 + AT_rich Low_complexity Low_complexity 1 36 0 3 1601 249 57 0 0 chr6 133253943 133253978 -16263059 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1601 304 310 25 75 chr6 133253997 133254196 -16262841 - MLT1B LTR MaLR -26 364 176 3 1601 270 262 131 0 chr6 133254975 133255036 -16262001 + ID_B1 SINE B4 145 213 -11 3 1601 239 246 159 0 chr6 133254976 133255045 -16261992 + B1F SINE Alu 68 147 -2 3 1601 309 365 33 27 chr6 133255176 133255359 -16261678 + Lx8 LINE L1 7137 7320 -153 3 1601 597 52 0 0 chr6 133255376 133255453 -16261584 + (TC)n Simple_repeat Simple_repeat 2 78 0 3 1601 23 78 0 0 chr6 133255880 133255931 -16261106 + AT_rich Low_complexity Low_complexity 1 51 0 3 1601 24 0 0 0 chr6 133256851 133256875 -16260162 + AT_rich Low_complexity Low_complexity 1 24 0 3 1601 22 0 0 0 chr6 133257253 133257275 -16259762 + AT_rich Low_complexity Low_complexity 1 22 0 3 1601 338 301 49 81 chr6 133257699 133257822 -16259215 + B1_Mur3 SINE Alu 18 136 -13 3 1601 237 159 0 0 chr6 133257822 133257866 -16259171 + GA-rich Low_complexity Low_complexity 1 44 0 3 1601 523 295 56 47 chr6 133258041 133258485 -16258552 + MYSERV16_I-int LTR ERVK 2 424 -1902 3 1601 1576 200 17 25 chr6 133258967 133259560 -16257477 + Lx3B LINE L1 6311 6968 -5 3 1601 29 0 0 0 chr6 133259573 133259602 -16257435 + AT_rich Low_complexity Low_complexity 1 29 0 3 1601 26 0 0 0 chr6 133260388 133260414 -16256623 + AT_rich Low_complexity Low_complexity 1 26 0 3 1601 3873 167 98 19 chr6 133263645 133264481 -16252556 + RLTR13D6 LTR ERVK 1 902 0 3 1601 180 111 0 0 chr6 133264788 133264815 -16252222 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 3 1601 243 0 0 0 chr6 133264828 133264855 -16252182 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3 1601 5341 182 31 6 chr6 133264855 133265886 -16251151 - Lx LINE L1 -10 6644 5588 3 1601 3325 220 17 91 chr6 133266330 133267295 -16249742 - Lx LINE L1 -288 5595 4703 3 1601 207 0 0 0 chr6 133267806 133267829 -16249208 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1601 25 0 0 0 chr6 133267884 133267909 -16249128 + AT_rich Low_complexity Low_complexity 1 25 0 3 1601 8859 122 36 5 chr6 133267909 133268740 -16248297 - Lx3_Mus LINE L1 -8 7001 6170 3 1601 3473 76 19 2 chr6 133268740 133269214 -16247823 + RLTR45 LTR ERVK 1 482 0 3 1601 8859 115 34 3 chr6 133269214 133270047 -16246990 - Lx3_Mus LINE L1 -840 6169 5293 3 1601 4829 175 25 22 chr6 133270096 133271112 -16245925 - L1_Mur2 LINE L1 -2884 2993 1975 3 1601 508 341 49 23 chr6 133271114 133271378 -16245659 - RLTR18B LTR ERVK -50 462 192 3 1601 327 344 86 23 chr6 133271475 133271731 -16245306 - RLTR18 LTR ERVK -344 272 1 3 1601 315 184 0 0 chr6 133271733 133271820 -16245217 + CT-rich Low_complexity Low_complexity 2 88 0 3 1601 974 311 66 5 chr6 133271984 133272410 -16244627 - Lx7 LINE L1 -357 7339 6888 3 1601 1068 109 0 13 chr6 133272994 133273143 -16243894 + B1_Mus2 SINE Alu 1 147 0 3 1601 418 14 39 39 chr6 133273151 133273228 -16243809 + (CAAAAA)n Simple_repeat Simple_repeat 2 78 0 3 1601 275 314 0 0 chr6 133273663 133273733 -16243304 + RSINE1 SINE B4 61 130 -35 3 1601 1608 320 52 139 chr6 133276797 133277763 -16239274 + Lx6 LINE L1 6166 7432 -28 3 1601 565 205 48 16 chr6 133277897 133278021 -16239016 + B2_Mm2 SINE B2 3 130 -65 3 1601 334 281 93 71 chr6 133278109 133278335 -16238702 + L1MC5 LINE L1 7420 7650 -311 3 1601 468 245 187 0 chr6 133278727 133278866 -16238171 + L1Md_F LINE L1 613 777 -5839 3 1601 1132 183 126 12 chr6 133278859 133279114 -16237923 + L1Md_F LINE L1 5005 5295 -588 3 1601 24 0 0 0 chr6 133279304 133279328 -16237709 + AT_rich Low_complexity Low_complexity 1 24 0 3 1601 1987 244 65 18 chr6 133280171 133280714 -16236323 + RLTR12A LTR ERVK 1 568 0 3 1601 25 51 0 0 chr6 133282503 133282542 -16234495 + AT_rich Low_complexity Low_complexity 1 39 0 3 1601 335 265 0 0 chr6 133283068 133283136 -16233901 - ID_B1 SINE B4 -9 215 148 3 1601 1735 313 143 6 chr6 133283141 133283973 -16233064 - Lx6 LINE L1 0 7460 6299 3 1601 3541 45 10 47 chr6 133283973 133284466 -16232571 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1601 358 345 53 19 chr6 133284466 133284528 -16232509 - Lx6 LINE L1 -752 6298 6240 3 1601 493 335 33 9 chr6 133284827 133285041 -16231996 - Lx6 LINE L1 -1214 6246 6028 3 1601 233 333 167 23 chr6 133285047 133285179 -16231858 - ID_B1 SINE B4 -72 152 2 3 1601 255 152 0 0 chr6 133285491 133285537 -16231500 + T-rich Low_complexity Low_complexity 1 46 0 3 1601 1088 78 7 0 chr6 133285540 133285682 -16231355 - B1_Mus2 SINE Alu 0 147 5 3 1601 607 296 30 10 chr6 133285724 133285925 -16231112 - B3 SINE B2 -11 205 1 3 1601 2962 71 2 34 chr6 133286223 133286631 -16230406 + MTA_Mm LTR MaLR 2 396 0 3 1601 663 211 175 5 chr6 133286653 133286853 -16230184 - Lx3C LINE L1 -5 6971 6738 3 1601 1410 214 114 10 chr6 133286849 133287315 -16229722 - Lx3C LINE L1 -720 6289 5709 3 1601 823 49 197 0 chr6 133287315 133287437 -16229600 + B1_Mus2 SINE Alu 2 147 0 3 1601 351 0 0 0 chr6 133287441 133287480 -16229557 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1601 1976 105 7 0 chr6 133287520 133287805 -16229232 + L1_Mus3 LINE L1 6057 6343 -295 3 1601 438 129 0 41 chr6 133287795 133287892 -16229145 - Lx3_Mus LINE L1 -838 6171 6079 3 1601 1769 144 0 38 chr6 133287900 133288246 -16228791 - L1_Mur1 LINE L1 -2362 3524 3192 3 1601 2117 111 21 66 chr6 133288239 133288616 -16228421 + Lx3_Mus LINE L1 6629 6988 -21 4 1601 230 0 0 32 chr6 133288616 133288647 -16228390 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1601 651 46 0 0 chr6 133289078 133289165 -16227872 + (TTTTG)n Simple_repeat Simple_repeat 3 89 0 4 1601 287 299 11 0 chr6 133289247 133289334 -16227703 + CT-rich Low_complexity Low_complexity 2 89 0 4 1601 32 26 0 0 chr6 133289705 133289744 -16227293 + AT_rich Low_complexity Low_complexity 1 39 0 4 1601 308 272 0 0 chr6 133291403 133291506 -16225531 + T-rich Low_complexity Low_complexity 1 103 0 4 1601 1411 255 125 51 chr6 133291809 133292390 -16224647 + RLTR1 LTR ERV1 1 624 0 4 1601 314 324 86 0 chr6 133292676 133292781 -16224256 + ID_B1 SINE B4 104 217 -7 4 1601 791 220 160 52 chr6 133292862 133293231 -16223806 + RLTR9E LTR ERVK 1 409 0 4 1601 434 364 13 0 chr6 133293288 133293442 -16223595 + Lx8 LINE L1 7165 7320 -153 4 1601 339 25 0 0 chr6 133293447 133293487 -16223550 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1601 2893 251 59 42 chr6 133293550 133294322 -16222715 + MYSERV6-int LTR ERVK 7821 8499 -460 4 1601 2581 100 79 3 chr6 133294322 133294525 -16222512 - BGLII_Mus LTR ERVK 0 422 220 4 1601 282 29 0 0 chr6 133294525 133294560 -16222477 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 4 1601 2581 100 79 3 chr6 133294560 133294748 -16222289 - BGLII_Mus LTR ERVK -203 219 2 4 1601 2893 252 60 43 chr6 133294748 133295237 -16221800 + MYSERV6-int LTR ERVK 8500 8905 -54 4 1601 1905 150 33 55 chr6 133295238 133295604 -16221433 + RLTR15 LTR ERVK 1 358 -1 4 1601 878 305 52 81 chr6 133295643 133296224 -16220813 - Lx9 LINE L1 -206 7438 6875 4 1601 450 292 156 40 chr6 133296275 133296716 -16220321 - Lx9 LINE L1 -1108 6536 6135 4 1601 315 261 50 17 chr6 133296812 133296982 -16220055 - Lx9 LINE L1 -1671 5973 5800 4 1601 7115 106 188 1 chr6 133297066 133298273 -16218764 + L1_Mm LINE L1 4149 5581 -302 4 1601 255 79 0 0 chr6 133298360 133298398 -16218639 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1601 432 0 0 0 chr6 133298398 133298445 -16218592 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1601 247 371 69 0 chr6 133298471 133298587 -16218450 - Lx8 LINE L1 -214 7259 7136 4 1601 495 353 68 17 chr6 133299250 133299544 -16217493 - Lx8 LINE L1 -935 6538 6230 4 200 1547 280 49 47 chr6 133299549 133300246 -16216791 + L1_Rod LINE L1 4385 5080 -767 4 1602 216 0 0 0 chr6 133300246 133300270 -16216767 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1602 1547 280 49 47 chr6 133300270 133300408 -16216629 + L1_Rod LINE L1 5081 5221 -626 4 1602 432 0 0 0 chr6 133300450 133300498 -16216539 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1602 369 293 41 0 chr6 133300508 133300631 -16216406 - Lx8 LINE L1 -176 5671 5544 4 1602 1044 295 26 18 chr6 133300831 133301283 -16215754 + L1_Rod LINE L1 5292 5747 -100 4 1602 786 165 0 19 chr6 133301820 133301981 -16215056 - L1_Mus4 LINE L1 -3 6633 6476 4 1602 531 45 0 0 chr6 133303178 133303244 -16213793 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1602 4121 104 15 36 chr6 133303730 133304396 -16212641 + L1_Mm LINE L1 3707 4358 -1525 4 1602 1104 258 28 31 chr6 133304960 133305312 -16211725 - RLTR15 LTR ERVK -2 357 7 4 1602 306 231 123 0 chr6 133306510 133306575 -16210462 - ID_B1 SINE B4 -7 217 145 4 1602 329 324 76 36 chr6 133307219 133307523 -16209514 + MLT1B LTR MaLR 49 364 -26 4 1602 252 83 32 32 chr6 133307547 133307609 -16209428 + (TTTTG)n Simple_repeat Simple_repeat 5 66 0 4 1602 216 0 0 0 chr6 133308173 133308197 -16208840 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1602 249 33 0 0 chr6 133308197 133308226 -16208811 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1602 22 35 0 0 chr6 133308226 133308255 -16208782 + AT_rich Low_complexity Low_complexity 1 29 0 4 1602 24 53 0 0 chr6 133308978 133309016 -16208021 + AT_rich Low_complexity Low_complexity 1 38 0 4 1602 1696 306 91 70 chr6 133309501 133309681 -16207356 + Lx6 LINE L1 6555 6737 -723 4 1602 450 0 0 0 chr6 133309681 133309731 -16207306 + (GAAA)n Simple_repeat Simple_repeat 4 53 0 4 1602 366 23 0 0 chr6 133309731 133309773 -16207264 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 4 1602 1696 306 91 70 chr6 133309773 133309799 -16207238 + Lx6 LINE L1 6738 6738 -722 4 1602 1167 96 0 0 chr6 133309799 133309966 -16207071 + (GGAGA)n Simple_repeat Simple_repeat 2 168 0 4 1602 1696 306 91 70 chr6 133309966 133310615 -16206422 + Lx6 LINE L1 6738 7429 -31 4 1602 304 329 0 24 chr6 133310620 133310704 -16206333 + ID_B1 SINE B4 134 215 -9 4 1602 404 295 89 0 chr6 133312203 133312315 -16204722 + ID_B1 SINE B4 78 199 -25 4 1602 6228 114 49 22 chr6 133312468 133312859 -16204178 + L1_Mus4 LINE L1 5655 6017 -619 4 1602 5210 169 24 14 chr6 133312859 133313807 -16203230 - RMER17B LTR ERVK 0 958 1 4 1602 6228 99 52 22 chr6 133313807 133314393 -16202644 + L1_Mus4 LINE L1 6018 6631 -5 4 1602 2225 221 40 28 chr6 133314665 133315195 -16201842 - RLTR12A LTR ERVK -19 549 14 4 1602 427 352 0 21 chr6 133316531 133316676 -16200361 - MTD LTR MaLR -70 349 208 4 1602 5497 129 57 22 chr6 133316681 133316931 -16200106 + Lx3A LINE L1 5973 6263 -718 4 1602 573 15 0 0 chr6 133316931 133316997 -16200040 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1602 5497 129 57 22 chr6 133316997 133317713 -16199324 + Lx3A LINE L1 6264 6972 -9 4 1602 21 0 0 0 chr6 133317718 133317739 -16199298 + AT_rich Low_complexity Low_complexity 1 21 0 4 1602 3261 205 122 41 chr6 133318796 133319605 -16197432 - Lx4A LINE L1 -2 7056 6182 4 1602 14893 162 18 16 chr6 133319605 133322534 -16194503 - L1_Mur2 LINE L1 -954 4923 1990 4 1602 423 357 38 28 chr6 133322535 133322799 -16194238 - RLTR18B LTR ERVK -50 566 197 4 1602 381 326 59 96 chr6 133322840 133323162 -16193875 - RLTR18 LTR ERVK -298 318 9 4 1602 450 0 0 0 chr6 133323169 133323219 -16193818 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1602 321 172 0 0 chr6 133323219 133323283 -16193754 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1602 409 253 24 0 chr6 133323308 133323391 -16193646 - RSINE1 SINE B4 -22 143 59 4 1602 1101 309 47 30 chr6 133323405 133323503 -16193534 - Lx7 LINE L1 -350 7346 7244 4 1602 1605 188 12 15 chr6 133323503 133323827 -16193210 + ORR1A2 LTR MaLR 5 327 0 4 1602 1101 309 47 30 chr6 133323827 133324192 -16192845 - Lx7 LINE L1 -453 7243 6875 4 1602 704 198 169 12 chr6 133325002 133325278 -16191759 - RMER3D-int LTR ERVK -1528 1314 1014 4 1602 639 139 40 16 chr6 133325272 133325301 -16191736 - RMER3D-int LTR ERVK -2227 615 586 4 1602 657 0 0 0 chr6 133325301 133325374 -16191663 + (TTTCC)n Simple_repeat Simple_repeat 3 75 0 4 1602 639 139 40 16 chr6 133325374 133325468 -16191569 - RMER3D-int LTR ERVK -2257 585 489 4 1602 620 202 9 70 chr6 133325601 133325814 -16191223 - RMER3D-int LTR ERVK -1991 851 652 4 1602 489 157 45 0 chr6 133325826 133325915 -16191122 - RMER3D-int LTR ERVK -2259 583 491 4 1602 902 282 59 24 chr6 133326206 133326697 -16190340 + Lx5 LINE L1 6455 6894 -566 4 1602 21 0 0 0 chr6 133326958 133326979 -16190058 + AT_rich Low_complexity Low_complexity 1 21 0 4 1602 754 153 16 8 chr6 133326981 133327106 -16189931 + B2_Mm2 SINE B2 3 128 -67 4 1602 24 0 0 0 chr6 133328878 133328902 -16188135 + AT_rich Low_complexity Low_complexity 1 24 0 4 1602 2395 288 58 42 chr6 133331265 133332750 -16184287 - L1_Rod LINE L1 -97 5750 4243 4 1602 373 335 54 11 chr6 133333168 133333428 -16183609 + Lx8 LINE L1 6200 6470 -1003 4 1602 21 0 0 0 chr6 133334161 133334182 -16182855 + AT_rich Low_complexity Low_complexity 1 21 0 4 1602 22 88 0 0 chr6 133334440 133334497 -16182540 + AT_rich Low_complexity Low_complexity 1 57 0 4 1602 259 161 173 0 chr6 133334582 133334663 -16182374 - Lx LINE L1 0 6654 6560 4 1602 357 24 0 0 chr6 133334717 133334759 -16182278 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1602 486 33 0 0 chr6 133334759 133334818 -16182219 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1602 260 298 24 0 chr6 133335743 133335827 -16181210 + GA-rich Low_complexity Low_complexity 2 87 0 4 1602 1681 217 58 29 chr6 133336511 133337032 -16180005 - L1_Mur2 LINE L1 -96 5781 5246 4 1602 6682 177 28 40 chr6 133337041 133338884 -16178153 - Lx2 LINE L1 -1 6996 5166 4 1602 343 214 12 0 chr6 133338876 133338960 -16178077 + Lx4A LINE L1 6321 6405 -653 4 1602 460 132 11 0 chr6 133338960 133339051 -16177986 - MYSERV6-int LTR ERVK -1012 7947 7856 4 1602 260 293 101 25 chr6 133339105 133339224 -16177813 - RMER4A LTR ERVK -8 458 331 4 1602 213 94 0 0 chr6 133339459 133339491 -16177546 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 4 1602 273 254 8 38 chr6 133339506 133339637 -16177400 - Lx3A LINE L1 -8 6973 6847 4 1602 10488 176 11 8 chr6 133339643 133341770 -16175267 + L1_Mm LINE L1 3633 5766 -117 4 1602 3593 105 4 6 chr6 133341817 133342325 -16174712 - L1_Mus2 LINE L1 -1 6565 6059 4 1602 5924 106 16 5 chr6 133342323 133343192 -16173845 + L1_Mus4 LINE L1 5755 6633 -3 4 1602 751 173 8 30 chr6 133343399 133343530 -16173507 + B1_Mur4 SINE Alu 2 129 -21 4 1602 208 93 22 44 chr6 133343551 133343596 -16173441 + GA-rich Low_complexity Low_complexity 2 45 0 4 1602 270 275 57 14 chr6 133343988 133344058 -16172979 + B3A SINE B2 84 156 -42 4 1602 515 66 0 13 chr6 133344059 133344136 -16172901 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 1602 420 135 35 20 chr6 133344467 133344563 -16172474 - MTB LTR MaLR 0 419 323 4 1602 21 36 0 0 chr6 133345821 133345849 -16171188 + AT_rich Low_complexity Low_complexity 1 28 0 4 1602 241 286 117 8 chr6 133346224 133346344 -16170693 - Lx7 LINE L1 -4 7692 7560 4 1602 340 19 19 37 chr6 133346381 133346435 -16170602 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 4 1602 420 242 19 63 chr6 133346471 133346630 -16170407 - Lx7 LINE L1 -289 7407 7256 4 1602 1083 275 42 51 chr6 133346956 133347405 -16169632 + L1_Mur3 LINE L1 321 765 -6963 4 1602 5670 82 254 7 chr6 133347410 133347435 -16169602 + Lx3_Mus LINE L1 4605 4629 -1257 4 1602 492 48 0 0 chr6 133347435 133347498 -16169539 + (GAAA)n Simple_repeat Simple_repeat 1 63 0 4 1602 6049 90 157 31 chr6 133347498 133349291 -16167746 + Lx3_Mus LINE L1 4630 6613 -396 4 1602 1535 223 84 32 chr6 133349311 133350018 -16167019 + L1_Mur3 LINE L1 777 1542 -4338 4 1602 333 0 0 0 chr6 133350018 133350055 -16166982 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1602 738 194 0 8 chr6 133350063 133350193 -16166844 - B1_Mus1 SINE Alu -15 133 5 4 1602 1352 203 101 47 chr6 133350193 133350252 -16166785 + L1_Mur3 LINE L1 1551 1607 -4273 4 1602 182 62 31 0 chr6 133350252 133350284 -16166753 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 4 1602 1352 203 101 47 chr6 133350284 133350414 -16166623 + L1_Mur3 LINE L1 1608 1735 -4145 4 1602 1696 116 25 0 chr6 133350412 133350688 -16166349 - MusHAL1 LINE L1 -281 2431 2149 4 1602 2461 163 121 21 chr6 133350692 133351262 -16165775 + L1_Mus4 LINE L1 4280 4906 -977 4 1602 2120 94 6 10 chr6 133351280 133351593 -16165444 - IAPLTR2b LTR ERVK -15 312 1 4 1602 4347 85 30 23 chr6 133351593 133352257 -16164780 - IAPEz-int LTR ERVK 0 6481 5813 4 1602 35209 82 33 6 chr6 133352254 133357344 -16159693 - IAPEz-int LTR ERVK -1056 5425 21 4 1602 1954 108 39 22 chr6 133357355 133357666 -16159371 - IAPLTR2b LTR ERVK -11 316 1 4 1602 6463 143 19 13 chr6 133357667 133359393 -16157644 + L1_Mus4 LINE L1 4903 6636 0 4 1602 252 362 8 79 chr6 133359499 133359625 -16157412 + B1_Mur4 SINE Alu 19 135 -15 5 1602 490 299 40 36 chr6 133359850 133360103 -16156934 + MYSERV6-int LTR ERVK 4293 4546 -2004 5 1602 21 36 0 0 chr6 133360778 133360806 -16156231 + AT_rich Low_complexity Low_complexity 1 28 0 5 1602 3315 185 9 17 chr6 133360808 133361461 -16155576 + Lx3B LINE L1 6316 6963 -10 5 1602 24 0 0 0 chr6 133361476 133361500 -16155537 + AT_rich Low_complexity Low_complexity 1 24 0 5 1602 360 256 52 81 chr6 133361720 133361856 -16155181 + RMER4B LTR ERVK 440 571 -14 5 1602 1908 220 158 21 chr6 133361858 133362251 -16154786 + MYSERV6-int LTR ERVK 7856 8243 -716 5 1602 1710 121 0 14 chr6 133362251 133362527 -16154510 - Lx LINE L1 -7 6647 6376 5 1602 1908 225 127 26 chr6 133362527 133363118 -16153919 + MYSERV6-int LTR ERVK 8244 8905 -54 5 1602 226 289 7 148 chr6 133363865 133364007 -16153030 + RMER4B LTR ERVK 458 579 -6 5 1602 957 260 81 69 chr6 133364013 133364095 -16152942 + MYSERV6-int LTR ERVK 1108 1186 -1140 5 1602 414 57 0 0 chr6 133364095 133364148 -16152889 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1602 1214 259 68 42 chr6 133364148 133364808 -16152229 + MYSERV6-int LTR ERVK 7846 8515 -444 5 1602 1424 244 32 37 chr6 133364894 133365328 -16151709 - Lx2B LINE L1 -13 6987 6556 5 1602 2764 216 24 22 chr6 133365347 133366412 -16150625 - Lx2B LINE L1 -755 6245 5166 5 1602 3244 217 39 6 chr6 133366404 133367118 -16149919 + Lx4A LINE L1 6321 7058 0 5 1602 6672 144 8 3 chr6 133367636 133369292 -16147745 + L1_Mus4 LINE L1 4974 6636 0 5 1602 21 0 0 0 chr6 133369354 133369375 -16147662 + AT_rich Low_complexity Low_complexity 1 21 0 5 1602 23 33 0 0 chr6 133369505 133369535 -16147502 + AT_rich Low_complexity Low_complexity 1 30 0 5 1602 510 31 0 0 chr6 133369592 133369656 -16147381 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 1602 543 69 0 0 chr6 133369841 133369913 -16147124 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1602 790 259 39 155 chr6 133369994 133370451 -16146586 + RLTR20A LTR ERVK 51 434 -107 5 1602 396 0 0 0 chr6 133370458 133370502 -16146535 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1602 531 0 0 0 chr6 133370502 133370560 -16146477 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1602 554 205 51 0 chr6 133371256 133371373 -16145664 - ETnERV2-int LTR ERVK -214 7192 7070 5 1602 482 79 13 0 chr6 133371660 133371736 -16145301 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 1602 30826 76 1 4 chr6 133372407 133377642 -16139395 + L1Md_F2 LINE L1 272 5588 -298 5 1602 7814 56 9 1 chr6 133377643 133378631 -16138406 + L1Md_F2 LINE L1 5590 6585 0 5 1602 8030 121 12 10 chr6 133378644 133380094 -16136943 + MusHAL1 LINE L1 197 1649 -1063 5 1602 231 62 0 0 chr6 133380093 133380125 -16136912 + L1_Mur1 LINE L1 4551 4582 -1304 5 1602 1960 117 15 27 chr6 133380129 133380463 -16136574 - L1_Mus4 LINE L1 -722 5916 5587 5 1602 3343 144 9 102 chr6 133380463 133381192 -16135845 + L1_Mus4 LINE L1 5911 6914 -86 5 1602 376 235 10 10 chr6 133381633 133381732 -16135305 - RLTR11A LTR ERVK 0 528 430 5 1602 752 167 64 39 chr6 133381842 133381998 -16135039 + RLTR11B LTR ERVK 290 449 -4 5 1602 1315 215 59 54 chr6 133382033 133382539 -16134498 - RLTR11B LTR ERVK -2 526 1 5 1602 34418 71 2 8 chr6 133383622 133389469 -16127568 + L1Md_F3 LINE L1 397 6217 -367 5 1602 2011 43 0 8 chr6 133389470 133389725 -16127312 + L1Md_F3 LINE L1 6317 6569 -15 5 1602 207 139 0 0 chr6 133389911 133389947 -16127090 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1602 468 106 0 0 chr6 133390029 133390114 -16126923 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 5 1602 1968 304 28 24 chr6 133391768 133392763 -16124274 - L1_Rod LINE L1 -97 5750 4752 5 1602 21 0 0 0 chr6 133392763 133392784 -16124253 + AT_rich Low_complexity Low_complexity 1 21 0 5 1602 492 48 0 0 chr6 133392788 133392851 -16124186 + (T)n Simple_repeat Simple_repeat 1 63 0 5 1602 5586 100 18 9 chr6 133393186 133394004 -16123033 - L1_Mus3 LINE L1 -15 6623 5798 5 1602 468 238 0 0 chr6 133394011 133394095 -16122942 - B2_Mm2 SINE B2 -108 87 4 5 1602 319 277 20 37 chr6 133394108 133394295 -16122742 - L1_Mm LINE L1 -1362 4521 4324 5 1602 279 113 0 0 chr6 133394300 133394353 -16122684 + (T)n Simple_repeat Simple_repeat 1 53 0 5 1602 444 253 60 23 chr6 133394435 133394748 -16122289 + Lx8 LINE L1 5764 6121 -1523 5 1602 224 258 76 0 chr6 133394976 133395042 -16121995 + MIRb SINE MIR 121 191 -77 5 1602 1255 111 14 19 chr6 133395216 133395428 -16121609 - Lx3_Mus LINE L1 -5 7004 6794 5 1602 469 344 50 19 chr6 133395527 133395785 -16121252 + Lx8 LINE L1 6222 6487 -986 5 1602 333 330 70 37 chr6 133396112 133396339 -16120698 + Lx9 LINE L1 7230 7464 -180 5 1602 1899 147 21 56 chr6 133396339 133396677 -16120360 - ORR1A2 LTR MaLR -1 326 1 5 1602 333 330 70 37 chr6 133396677 133396691 -16120346 + Lx9 LINE L1 7465 7479 -165 5 1602 1247 189 42 90 chr6 133396694 133397071 -16119966 - RLTR15 LTR ERVK 0 359 1 5 1602 21 0 0 0 chr6 133397092 133397113 -16119924 + AT_rich Low_complexity Low_complexity 1 21 0 5 1602 20059 90 7 11 chr6 133397266 133401071 -16115966 + L1Md_F LINE L1 392 4179 -1704 5 1602 482 90 0 0 chr6 133401098 133401165 -16115872 + L1Md_F2 LINE L1 271 337 -6282 5 1602 33349 70 1 2 chr6 133401158 133406093 -16110944 + L1Md_F2 LINE L1 563 5589 -297 5 1602 7702 65 4 1 chr6 133406093 133407086 -16109951 + L1Md_F2 LINE L1 5590 6585 0 5 1602 13138 64 5 1 chr6 133407092 133408527 -16108510 + L1Md_F LINE L1 4177 5614 -269 5 1602 288 0 0 0 chr6 133408527 133408559 -16108478 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1602 13138 64 5 1 chr6 133408559 133408822 -16108215 + L1Md_F LINE L1 5615 5881 -2 5 1602 3202 117 42 6 chr6 133408831 133409330 -16107707 + L1Md_F2 LINE L1 6066 6582 0 5 1602 3863 154 34 16 chr6 133409991 133410791 -16106246 + RLTR13D2 LTR ERVK 1 1017 -6 5 1602 31 0 0 0 chr6 133410866 133410897 -16106140 + AT_rich Low_complexity Low_complexity 1 31 0 5 1602 414 0 0 0 chr6 133412067 133412113 -16104924 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1602 501 32 0 0 chr6 133412193 133412256 -16104781 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1602 21 0 0 0 chr6 133412596 133412617 -16104420 + AT_rich Low_complexity Low_complexity 1 21 0 5 1602 375 23 0 0 chr6 133412760 133412804 -16104233 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1602 393 39 0 0 chr6 133412888 133412939 -16104098 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1602 365 357 0 30 chr6 133413191 133413324 -16103713 - Lx8 LINE L1 -202 7271 7143 5 1602 22 35 0 0 chr6 133413379 133413408 -16103629 + AT_rich Low_complexity Low_complexity 1 29 0 5 1602 287 330 83 0 chr6 133413447 133413556 -16103481 - ID_B1 SINE B4 -2 222 105 5 1602 205 133 44 0 chr6 133414436 133414481 -16102556 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1602 390 42 0 0 chr6 133415662 133415710 -16101327 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 1602 626 25 12 0 chr6 133415831 133415911 -16101126 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1602 360 358 0 31 chr6 133416179 133416306 -16100731 - Lx8 LINE L1 -208 7265 7143 5 1602 277 330 83 0 chr6 133416429 133416538 -16100499 - ID_B1 SINE B4 -2 222 105 5 1602 459 0 0 0 chr6 133417436 133417487 -16099550 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1602 627 26 0 0 chr6 133417487 133417563 -16099474 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1602 210 37 0 0 chr6 133417563 133417590 -16099447 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1602 228 111 0 0 chr6 133418767 133418803 -16098234 + (GA)n Simple_repeat Simple_repeat 2 37 0 5 1602 276 53 0 0 chr6 133419012 133419050 -16097987 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1602 3559 71 6 2 chr6 133419092 133419571 -16097466 + L1Md_F3 LINE L1 6103 6583 -1 5 1602 2498 193 105 10 chr6 133420552 133421317 -16095720 + Lx5 LINE L1 5408 6254 -796 5 1602 489 319 12 19 chr6 133421318 133421478 -16095559 + Lx5 LINE L1 6813 6971 -79 5 1602 2165 219 15 4 chr6 133421493 133421966 -16095071 + Lx5 LINE L1 6497 6974 -2 5 1602 213 94 0 0 chr6 133421986 133422018 -16095019 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1602 393 136 0 0 chr6 133422216 133422282 -16094755 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1602 3512 250 46 16 chr6 133422458 133424023 -16093014 + L1_Mur3 LINE L1 313 1927 -3953 5 1602 305 75 19 0 chr6 133424705 133424758 -16092279 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1602 363 113 0 0 chr6 133424758 133424820 -16092217 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1602 273 188 15 45 chr6 133425139 133425206 -16091831 - RMER6B LTR ERVK -396 65 1 5 1602 1148 142 23 28 chr6 133425209 133425427 -16091610 - MYSERV6-int LTR ERVK -1195 7764 7548 5 1602 624 38 0 0 chr6 133425658 133425737 -16091300 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1602 605 292 47 6 chr6 133425741 133425910 -16091127 - B3 SINE B2 -37 179 4 5 1602 31 0 0 0 chr6 133427630 133427661 -16089376 + AT_rich Low_complexity Low_complexity 1 31 0 5 1602 266 324 92 9 chr6 133428602 133428711 -16088326 + ID_B1 SINE B4 105 222 -2 5 1602 28 29 0 0 chr6 133428745 133428780 -16088257 + AT_rich Low_complexity Low_complexity 1 35 0 5 1602 381 344 0 32 chr6 133428836 133428962 -16088075 + Lx8 LINE L1 7143 7264 -209 5 1602 600 40 0 0 chr6 133429232 133429307 -16087730 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1602 189 121 0 0 chr6 133429394 133429427 -16087610 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1603 859 274 44 19 chr6 133431442 133431758 -16085279 - L1_Rod LINE L1 -95 5752 5429 5 1603 5915 129 69 3 chr6 133431799 133432883 -16084154 - L1_Mus3 LINE L1 -7 6631 5477 5 1603 13284 148 10 4 chr6 133432886 133435138 -16081899 - L1_Mm LINE L1 -182 5701 3437 5 1603 6518 124 11 8 chr6 133435138 133436206 -16080831 + MusHAL1 LINE L1 1191 2262 -450 5 1603 1218 316 54 47 chr6 133436261 133437359 -16079678 - L1_Rod LINE L1 -500 5347 4243 5 1603 291 237 3 14 chr6 133437380 133437477 -16079560 + Lx5 LINE L1 5803 5930 -382 5 1603 450 348 52 37 chr6 133437746 133438074 -16078963 + Lx9 LINE L1 6307 6639 -1005 5 1603 190 89 43 22 chr6 133438111 133438157 -16078880 + A-rich Low_complexity Low_complexity 2 48 0 5 1603 22 56 0 0 chr6 133439105 133439141 -16077896 + AT_rich Low_complexity Low_complexity 1 36 0 5 1603 310 212 10 10 chr6 133439225 133439325 -16077712 - L1_Mus3 LINE L1 -1 6637 6538 5 1603 528 81 0 0 chr6 133439367 133439441 -16077596 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 1603 528 45 0 0 chr6 133439441 133439508 -16077529 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1603 236 30 0 29 chr6 133439808 133439842 -16077195 + (TAA)n Simple_repeat Simple_repeat 2 34 0 5 1603 486 98 0 0 chr6 133440458 133440540 -16076497 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 6 1603 253 333 0 21 chr6 133440547 133440642 -16076395 + GA-rich Low_complexity Low_complexity 4 96 0 6 1603 2104 206 44 15 chr6 133441329 133441852 -16075185 - L1_Mur2 LINE L1 -94 5783 5246 6 1603 1710 189 59 6 chr6 133441862 133442224 -16074813 - Lx2 LINE L1 0 7058 6609 6 1603 395 100 0 14 chr6 133442224 133442249 -16074788 + (TCC)n Simple_repeat Simple_repeat 3 27 0 6 1603 1055 122 6 0 chr6 133442249 133442421 -16074616 + (TTC)n Simple_repeat Simple_repeat 3 175 0 6 1603 395 100 0 14 chr6 133442421 133442466 -16074571 + (TCC)n Simple_repeat Simple_repeat 3 47 0 6 1603 4045 92 2 14 chr6 133442481 133443056 -16073981 - L1_Mus1 LINE L1 -1 6566 5999 6 1603 807 207 77 0 chr6 133443056 133443225 -16073812 - Lx2 LINE L1 -355 6642 6461 6 1603 1962 69 47 0 chr6 133443225 133443499 -16073538 - MTA_Mm LTR MaLR -109 287 1 6 1603 1126 277 82 6 chr6 133443499 133443830 -16073207 + Lx4A LINE L1 6565 6920 -138 6 1603 1904 164 3 3 chr6 133443830 133444141 -16072896 + RLTR10E LTR ERVK 1 311 0 6 1603 2354 180 83 26 chr6 133444142 133444877 -16072160 + MMERVK10C-int LTR ERVK 3 872 -6709 6 1603 1476 189 197 28 chr6 133444848 133445279 -16071758 + RMER16-int LTR ERVK 312 815 -4591 6 1603 323 154 58 0 chr6 133445274 133445326 -16071711 + RMER16-int LTR ERVK 950 1004 -983 6 1603 421 307 35 31 chr6 133445441 133445717 -16071320 + IAP-d-int LTR ERVK 825 1061 -5481 6 1603 312 164 36 0 chr6 133445734 133445789 -16071248 + IAP-d-int LTR ERVK 447 503 -6039 6 1603 1467 124 102 0 chr6 133445789 133446015 -16071022 + IAP-d-int LTR ERVK 5007 5255 -1287 6 1603 4204 145 15 3 chr6 133446019 133446697 -16070340 + IAPEY3-int LTR ERVK 6995 7680 0 6 1603 1934 161 3 3 chr6 133446697 133447008 -16070029 + RLTR10E LTR ERVK 1 311 0 6 1603 419 212 49 49 chr6 133447008 133447152 -16069885 + Lx4A LINE L1 6915 7058 0 6 1603 1102 324 25 25 chr6 133447697 133448093 -16068944 - Lx5 LINE L1 -5 7045 6650 6 1603 261 280 0 0 chr6 133448138 133448213 -16068824 + L1_Mur1 LINE L1 5179 5253 -633 6 1603 226 321 0 56 chr6 133448220 133448362 -16068675 + Lx3C LINE L1 6081 6214 -762 6 1603 594 229 0 0 chr6 133448380 133448502 -16068535 + Lx2B LINE L1 6537 6658 -342 6 1603 361 67 0 48 chr6 133448502 133448565 -16068472 + (TTTTC)n Simple_repeat Simple_repeat 1 60 0 6 1603 1759 132 3 19 chr6 133448609 133448622 -16068415 - L1_Mur1 LINE L1 -1247 4639 4631 6 1603 955 88 0 20 chr6 133448622 133448772 -16068265 + (TTTTC)n Simple_repeat Simple_repeat 4 150 0 6 1603 1759 132 3 19 chr6 133448772 133449066 -16067971 - L1_Mur1 LINE L1 -1256 4630 4337 6 1603 376 213 147 54 chr6 133450169 133450298 -16066739 - Lx4A LINE L1 -2 7056 6916 6 1603 859 220 126 0 chr6 133450309 133450532 -16066505 - Lx4A LINE L1 -626 6432 6182 6 1603 6553 186 30 17 chr6 133450532 133452046 -16064991 - L1_Mur2 LINE L1 -954 4923 3391 6 1603 6875 83 41 2 chr6 133452042 133453306 -16063731 - L1_Mus2 LINE L1 0 6566 5270 6 1603 1406 195 100 27 chr6 133453289 133453558 -16063479 - L1_Mur2 LINE L1 -2445 3432 3135 6 1603 336 24 0 0 chr6 133453558 133453599 -16063438 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1603 1406 195 100 27 chr6 133453599 133453740 -16063297 - L1_Mur2 LINE L1 -2743 3134 2992 6 1603 6006 101 13 0 chr6 133453748 133454600 -16062437 - L1_Mus1 LINE L1 -1 6566 5704 6 1603 1909 159 12 46 chr6 133454596 133455012 -16062025 - L1_Mur2 LINE L1 -2873 3004 2603 6 1603 463 322 42 98 chr6 133455012 133455534 -16061503 - RLTR18B LTR ERVK -135 481 36 6 1603 264 266 13 0 chr6 133455554 133455633 -16061404 + CT-rich Low_complexity Low_complexity 1 80 0 6 1603 315 0 0 0 chr6 133455633 133455668 -16061369 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 1603 372 22 0 0 chr6 133455668 133455712 -16061325 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1603 378 0 0 0 chr6 133455843 133455885 -16061152 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 6 1603 799 335 52 30 chr6 133455885 133455959 -16061078 - Lx7 LINE L1 -372 7324 7243 6 1603 1223 241 22 3 chr6 133455959 133456280 -16060757 + ORR1A2 LTR MaLR 1 327 0 6 1603 799 335 52 30 chr6 133456280 133456611 -16060426 - Lx7 LINE L1 -454 7242 6911 6 1603 3507 124 32 2 chr6 133456769 133457328 -16059709 - L1_Mm LINE L1 -946 4937 4362 6 1603 7016 90 7 8 chr6 133457329 133458560 -16058477 + L1_Mus2 LINE L1 5334 6562 -4 6 1603 24 0 0 0 chr6 133458588 133458612 -16058425 + AT_rich Low_complexity Low_complexity 1 24 0 6 1603 432 278 45 60 chr6 133459022 133459156 -16057881 + B1_Mur3 SINE Alu 18 149 0 6 1603 263 293 68 68 chr6 133459823 133460087 -16056950 - Lx9 LINE L1 -1221 6423 6160 6 1603 273 267 46 53 chr6 133460155 133460355 -16056682 - Lx7 LINE L1 -1708 5988 5788 6 1603 2620 276 79 54 chr6 133460368 133460412 -16056625 + L1_Rod LINE L1 4248 4287 -1560 6 1603 2638 109 14 14 chr6 133460412 133460831 -16056206 - BGLII LTR ERVK 0 421 3 6 1603 2620 276 79 54 chr6 133460831 133461767 -16055270 + L1_Rod LINE L1 4288 5241 -606 6 1603 5203 126 10 73 chr6 133461767 133462729 -16054308 + RLTR13D6 LTR ERVK 1 902 0 6 1603 2620 276 79 54 chr6 133462729 133463219 -16053818 + L1_Rod LINE L1 5242 5755 -92 6 1603 1359 294 39 54 chr6 133466092 133466628 -16050409 + RLTR11A LTR ERVK 1 528 0 6 1603 964 144 0 0 chr6 133466660 133466820 -16050217 - RLTR11B LTR ERVK -4 449 290 6 1603 315 0 0 0 chr6 133467210 133467245 -16049792 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 6 1603 1148 81 0 13 chr6 133467253 133467403 -16049634 - B1_Mus1 SINE Alu 0 148 1 6 1603 1342 306 21 48 chr6 133467483 133468100 -16048937 - Lx5 LINE L1 -28 7432 6454 6 1603 312 27 0 0 chr6 133468100 133468137 -16048900 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 6 1603 392 312 108 9 chr6 133468137 133468249 -16048788 - Lx5 LINE L1 -920 6776 6642 6 1603 1713 232 2 17 chr6 133468253 133468656 -16048381 + MYSERV6-int LTR ERVK 681 1077 -7882 6 1603 703 179 22 7 chr6 133468656 133468791 -16048246 + Lx LINE L1 6067 6203 -451 6 1603 1054 123 68 0 chr6 133468767 133468930 -16048107 + Lx LINE L1 6340 6513 -141 6 1603 2773 88 10 3 chr6 133468935 133469321 -16047716 + MTA_Mm LTR MaLR 6 394 -2 6 1603 7195 94 47 3 chr6 133469323 133470375 -16046662 + MTA_Mm-int LTR MaLR 1 1098 0 6 1603 2921 94 2 5 chr6 133470375 133470772 -16046265 + MTA_Mm LTR MaLR 1 396 0 6 1603 2031 196 15 69 chr6 133470785 133471322 -16045715 + MYSERV6-int LTR ERVK 1794 2301 -6658 6 1603 668 156 72 39 chr6 133471311 133471464 -16045573 + MYSERV6-int LTR ERVK 4468 4625 -4334 6 1603 7959 166 48 11 chr6 133471472 133473711 -16043326 + Lx LINE L1 3513 6073 -581 6 1603 311 235 99 0 chr6 133474914 133474995 -16042042 + RLTR11A LTR ERVK 361 449 -78 6 1603 488 174 11 11 chr6 133475018 133475111 -16041926 + RLTR11A LTR ERVK 434 526 -2 6 1603 372 205 71 12 chr6 133475710 133475794 -16041243 + B1_Mur1 SINE Alu 33 122 -28 6 1603 274 222 28 0 chr6 133475893 133475965 -16041072 + MYSERV6-int LTR ERVK 6410 6483 -2476 6 1603 216 0 0 0 chr6 133476141 133476165 -16040872 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1603 193 229 61 76 chr6 133476230 133476296 -16040741 + MIRc SINE MIR 114 178 -90 6 1603 320 329 71 7 chr6 133477254 133477395 -16039642 - Lx8 LINE L1 -1047 6426 6277 6 1603 612 27 0 0 chr6 133478245 133478319 -16038718 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 1603 1057 82 0 13 chr6 133478423 133478572 -16038465 + B1_Mm SINE Alu 1 147 0 6 1603 204 44 0 82 chr6 133478572 133478621 -16038416 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 6 1603 944 289 47 14 chr6 133478653 133479014 -16038023 + L1_Rod LINE L1 5378 5750 -97 6 1603 23 33 0 0 chr6 133481757 133481787 -16035250 + AT_rich Low_complexity Low_complexity 1 30 0 6 1603 411 172 0 11 chr6 133483251 133483345 -16033692 - Lx LINE L1 -7 6647 6555 6 1603 11095 117 15 4 chr6 133483364 133484267 -16032770 - L1VL4 LINE L1 -907 2652 1735 6 1603 4648 156 125 11 chr6 133484267 133485150 -16031887 - RLTR13C1 LTR ERVK 0 983 1 6 1603 11095 137 11 3 chr6 133485150 133486756 -16030281 - L1VL4 LINE L1 -1825 1734 119 6 1603 4982 77 4 18 chr6 133486757 133487493 -16029544 - L1Md_F2 LINE L1 0 6582 5895 6 1603 335 270 0 26 chr6 133488381 133488457 -16028580 + RSINE1 SINE B4 57 130 -35 6 1603 216 255 0 0 chr6 133489374 133489421 -16027616 + GA-rich Low_complexity Low_complexity 1 47 0 6 1603 270 0 0 0 chr6 133489578 133489608 -16027429 + (TTAAA)n Simple_repeat Simple_repeat 3 32 0 6 1603 335 270 0 26 chr6 133489765 133489841 -16027196 + RSINE1 SINE B4 57 130 -35 6 1603 937 318 94 52 chr6 133490075 133490480 -16026557 + Lx6 LINE L1 7011 7432 -28 6 1603 2487 83 127 32 chr6 133490662 133491096 -16025941 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1603 649 181 0 0 chr6 133491386 133491502 -16025535 + RLTR11B LTR ERVK 290 405 -48 6 1603 774 159 0 19 chr6 133493873 133494033 -16023004 + L1_Mus4 LINE L1 6476 6632 -4 6 1603 1016 281 43 20 chr6 133494572 133495018 -16022019 - L1_Rod LINE L1 -100 5747 5292 6 1603 540 0 0 0 chr6 133495020 133495080 -16021957 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 1603 395 285 41 0 chr6 133495267 133495390 -16021647 + L1_Rod LINE L1 5544 5671 -176 6 1603 627 48 0 0 chr6 133495402 133495485 -16021552 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 1603 1641 284 40 44 chr6 133495526 133495661 -16021376 - L1_Rod LINE L1 -625 5222 5081 6 1603 405 0 0 0 chr6 133495661 133495706 -16021331 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1603 1641 284 40 44 chr6 133495706 133496410 -16020627 - L1_Rod LINE L1 -767 5080 4386 6 1603 431 357 88 17 chr6 133496407 133496703 -16020334 + Lx8 LINE L1 6222 6538 -935 6 1603 247 371 69 0 chr6 133497366 133497482 -16019555 + Lx8 LINE L1 7136 7259 -214 6 1603 450 0 0 0 chr6 133497510 133497560 -16019477 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1603 252 59 0 0 chr6 133497560 133497593 -16019444 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1603 7183 98 177 25 chr6 133497679 133498924 -16018113 - L1_Mm LINE L1 -301 5582 4149 6 1603 456 274 49 24 chr6 133499008 133499240 -16017797 + Lx9 LINE L1 5800 6134 -1510 6 1603 202 0 59 29 chr6 133499240 133499274 -16017763 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1603 470 303 154 56 chr6 133499274 133499722 -16017315 + Lx9 LINE L1 6135 6634 -1010 6 1603 489 288 44 29 chr6 133499772 133499976 -16017061 + Lx9 LINE L1 6878 7084 -560 6 1603 669 306 56 21 chr6 133500023 133500360 -16016677 + Lx9 LINE L1 7090 7438 -206 1 1603 1903 157 33 42 chr6 133500399 133500758 -16016279 - RLTR15 LTR ERVK -1 358 3 2 1603 2913 251 52 47 chr6 133500761 133501253 -16015784 - MYSERV6-int LTR ERVK -56 8903 8500 2 1603 2571 100 79 3 chr6 133501253 133501441 -16015596 + BGLII_Mus LTR ERVK 1 189 -233 3 1603 390 21 0 0 chr6 133501441 133501488 -16015549 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 4 1603 2571 100 79 3 chr6 133501488 133501691 -16015346 + BGLII_Mus LTR ERVK 190 420 -2 3 1603 2913 251 52 47 chr6 133501691 133502478 -16014559 - MYSERV6-int LTR ERVK -460 8499 7821 2 1603 471 18 0 0 chr6 133502509 133502565 -16014472 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1603 369 383 13 0 chr6 133502568 133502722 -16014315 - Lx8 LINE L1 -153 7320 7165 6 1603 413 235 8 56 chr6 133502779 133502905 -16014132 - RLTR9E LTR ERVK 0 409 290 7 1603 1477 259 80 44 chr6 133503315 133503892 -16013145 - RLTR1 LTR ERV1 -21 603 1 8 1603 1209 37 173 0 chr6 133503892 133504054 -16012983 - RLTR1B-int LTR ERV1 0 3299 3110 8 1603 1134 225 201 30 chr6 133504113 133504550 -16012487 - RLTR1B LTR ERV1 0 512 1 9 1603 32213 80 2 4 chr6 133504892 133510197 -16006840 + L1Md_F2 LINE L1 199 5589 -297 1 1603 7801 55 2 2 chr6 133510197 133511179 -16005858 + L1Md_F2 LINE L1 5590 6571 -14 1 1603 200 227 0 0 chr6 133511183 133511227 -16005810 + A-rich Low_complexity Low_complexity 1 44 0 1 1603 2757 55 3 3 chr6 133512582 133512927 -16004110 - IAPLTR4 LTR ERVK 0 345 1 1 1603 6143 192 0 8 chr6 133512927 133513987 -16003050 - IAPLTR3-int LTR ERVK -20 6801 5750 1 1603 435 261 47 29 chr6 133514338 133514508 -16002529 - IAPLTR3-int LTR ERVK -819 5723 5551 1 1603 12317 100 6 16 chr6 133514514 133517169 -15999868 - L1Md_A LINE L1 -3038 2845 238 1 1603 8735 72 8 0 chr6 133517170 133518354 -15998683 + L1Md_F2 LINE L1 2779 3971 -1912 1 1603 4682 62 0 3 chr6 133518353 133518957 -15998080 + L1Md_F2 LINE L1 4985 5586 -297 1 1603 8053 47 1 1 chr6 133518957 133519940 -15997097 + L1Md_F2 LINE L1 5587 6569 -13 1 1603 2420 96 3 38 chr6 133519969 133520336 -15996701 - MTA_Mm LTR MaLR -42 354 1 1 1603 622 281 45 25 chr6 133520637 133520838 -15996199 + B3 SINE B2 1 205 -11 1 1603 1117 63 7 0 chr6 133520879 133521021 -15996016 + B1_Mus2 SINE Alu 5 147 0 1 1603 792 122 0 0 chr6 133521033 133521156 -15995881 + (GGA)n Simple_repeat Simple_repeat 3 125 0 1 1603 254 333 167 23 chr6 133521469 133521601 -15995436 + ID_B1 SINE B4 2 152 -72 1 1603 546 330 32 9 chr6 133521601 133521821 -15995216 + Lx6 LINE L1 6022 6246 -1214 2 1603 1426 328 37 18 chr6 133521857 133522654 -15994383 + Lx6 LINE L1 6507 7430 -30 2 1603 270 309 61 12 chr6 133522667 133522749 -15994288 + ID_B1 SINE B4 130 215 -9 1 1603 23 0 0 0 chr6 133523287 133523310 -15993727 + AT_rich Low_complexity Low_complexity 1 23 0 2 1603 22 0 0 0 chr6 133524398 133524420 -15992617 + AT_rich Low_complexity Low_complexity 1 22 0 2 1603 2005 237 58 22 chr6 133525092 133525640 -15991397 - RLTR12A LTR ERVK 0 568 1 2 1603 952 165 26 11 chr6 133526652 133526880 -15990157 - L1_Mur2 LINE L1 -555 5325 5096 2 1603 2875 26 3 0 chr6 133526882 133527225 -15989812 - L1Md_T LINE L1 0 6582 6239 2 1603 1015 34 0 0 chr6 133527225 133527343 -15989694 + L1Md_T LINE L1 6098 6215 -367 2 1603 10154 169 4 101 chr6 133527341 133527817 -15989220 - L1_Mur2 LINE L1 -771 5106 4731 2 1603 225 0 0 0 chr6 133527817 133527842 -15989195 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 2 1603 10154 169 4 101 chr6 133527842 133529367 -15987670 - L1_Mur2 LINE L1 -1147 4730 3335 2 1603 967 137 0 20 chr6 133529367 133529516 -15987521 - B1_Mus1 SINE Alu 0 148 3 2 1603 10154 169 4 101 chr6 133529516 133529885 -15987152 - L1_Mur2 LINE L1 -2543 3334 2966 2 1603 6779 130 29 8 chr6 133529877 133531359 -15985678 + L1_Mus4 LINE L1 5111 6635 -1 2 1603 282 360 0 0 chr6 133531359 133531445 -15985592 - MTD LTR MaLR -229 190 105 2 1603 529 294 38 38 chr6 133532260 133532469 -15984568 + B3 SINE B2 2 210 -6 3 1603 2325 186 81 11 chr6 133532576 133533069 -15983968 + RMER13A LTR ERVK 3 640 -318 3 1603 613 253 18 41 chr6 133533052 133533221 -15983816 + RMER13A LTR ERVK 575 739 -121 3 1603 25 0 0 0 chr6 133533498 133533523 -15983514 + AT_rich Low_complexity Low_complexity 1 25 0 3 1603 6567 95 38 6 chr6 133533527 133534616 -15982421 - L1_Mus2 LINE L1 -1 6565 5447 3 1603 5330 100 0 46 chr6 133534627 133535432 -15981605 - L1_Mus1 LINE L1 -1 6566 5799 3 1603 318 221 156 0 chr6 133535733 133535810 -15981227 + ID_B1 SINE B4 129 217 -7 3 1603 21 0 0 0 chr6 133535857 133535878 -15981159 + AT_rich Low_complexity Low_complexity 1 21 0 3 1603 246 364 65 24 chr6 133535928 133536052 -15980985 + Lx8 LINE L1 7136 7264 -209 3 1603 483 73 0 0 chr6 133536112 133536180 -15980857 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1603 592 26 0 0 chr6 133537209 133537285 -15979752 + L1Md_T LINE L1 6505 6580 -2 3 1603 859 241 35 35 chr6 133538032 133538264 -15978773 + RLTR15 LTR ERVK 1 232 -127 4 1603 637 237 17 17 chr6 133538548 133538724 -15978313 + MYSERV6-int LTR ERVK 6546 6721 -2238 4 1603 362 277 16 16 chr6 133538722 133538843 -15978194 + RLTR18-int LTR ERVK 4720 4840 -521 4 1603 423 0 0 0 chr6 133539237 133539284 -15977753 + (TAAAA)n Simple_repeat Simple_repeat 3 49 0 4 1603 342 344 8 76 chr6 133539317 133539449 -15977588 + B1_Mur4 SINE Alu 19 141 -9 4 1603 597 291 60 33 chr6 133539655 133539989 -15977048 + MYSERV-int LTR ERVK 4293 4635 -1915 4 1603 446 175 114 42 chr6 133539991 133540158 -15976879 + MYSERV6-int LTR ERVK 7769 7947 -1012 4 1603 419 156 19 2 chr6 133540158 133540241 -15976796 - Lx4A LINE L1 -653 6405 6319 4 1603 2656 225 12 61 chr6 133540238 133540443 -15976594 + Lx2 LINE L1 5180 5350 -536 4 1603 2284 28 0 77 chr6 133540443 133540753 -15976284 + L1Md_F3 LINE L1 6298 6583 -1 4 1603 5842 174 36 19 chr6 133540753 133542069 -15974968 + Lx2 LINE L1 5351 6697 -300 4 1603 634 145 16 0 chr6 133542092 133542216 -15974821 + Lx2 LINE L1 6872 6997 0 4 1603 2116 209 23 13 chr6 133542221 133542756 -15974281 + L1_Mur2 LINE L1 5250 5794 -89 4 1603 27 0 0 0 chr6 133543377 133543404 -15973633 + AT_rich Low_complexity Low_complexity 1 27 0 5 1603 282 56 0 0 chr6 133543683 133543719 -15973318 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1603 216 167 0 0 chr6 133543720 133543756 -15973281 + GA-rich Low_complexity Low_complexity 1 36 0 5 1603 297 149 30 0 chr6 133543758 133543825 -15973212 + Lx LINE L1 6584 6652 -2 5 1603 21 0 0 0 chr6 133544200 133544221 -15972816 + AT_rich Low_complexity Low_complexity 1 21 0 5 1603 364 373 78 9 chr6 133544877 133545210 -15971827 - Lx9 LINE L1 -964 6680 6325 5 1603 225 255 45 45 chr6 133545470 133545581 -15971456 - Lx9 LINE L1 -1728 5916 5806 5 1603 2205 306 66 40 chr6 133545582 133547075 -15969962 + Lx9 LINE L1 4218 5750 -97 5 1603 402 21 0 0 chr6 133549775 133549822 -15967215 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 1603 6354 88 5 8 chr6 133549834 133550715 -15966322 - L1_Mus1 LINE L1 -1 6566 5689 5 1603 24 32 0 0 chr6 133550725 133550756 -15966281 + AT_rich Low_complexity Low_complexity 1 31 0 5 1603 216 97 0 0 chr6 133551225 133551256 -15965781 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 5 1603 741 56 0 0 chr6 133551759 133551866 -15965171 + L1Md_F3 LINE L1 6464 6570 -14 6 1603 593 197 49 8 chr6 133552596 133552719 -15964318 - B2_Mm2 SINE B2 -65 130 3 6 1603 1908 313 61 20 chr6 133552850 133554047 -15962990 - Lx6 LINE L1 -30 7430 5934 6 1603 232 219 0 0 chr6 133554617 133554658 -15962379 + (CTG)n Simple_repeat Simple_repeat 1 41 0 6 1603 233 297 0 30 chr6 133554664 133554730 -15962307 - B1_Mur1 SINE Alu 0 149 86 6 1603 203 204 19 0 chr6 133554808 133554862 -15962175 + CT-rich Low_complexity Low_complexity 2 56 0 6 1603 2982 155 7 31 chr6 133556380 133556954 -15960083 + L1_Mur2 LINE L1 2431 2990 -2887 6 1603 333 302 107 38 chr6 133557513 133557644 -15959393 - ID_B1 SINE B4 -6 218 79 6 1603 3092 20 0 0 chr6 133558835 133559181 -15957856 - ORR1A0 LTR MaLR 0 346 1 6 1603 291 309 34 76 chr6 133559515 133559634 -15957403 - ID_B1 SINE B4 -9 215 102 6 1603 1252 318 25 8 chr6 133559634 133560220 -15956817 - Lx6 LINE L1 -61 7399 6454 7 1603 259 206 0 42 chr6 133560225 133560264 -15956773 + T-rich Low_complexity Low_complexity 59 95 0 7 1603 225 0 0 0 chr6 133560264 133560289 -15956748 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 7 1603 259 206 0 42 chr6 133560289 133560345 -15956692 + T-rich Low_complexity Low_complexity 4 58 0 7 1603 231 243 0 51 chr6 133560909 133560987 -15956050 + GA-rich Low_complexity Low_complexity 3 76 0 7 1603 363 182 0 0 chr6 133561093 133561170 -15955867 + (CAA)n Simple_repeat Simple_repeat 2 78 0 7 200 1649 342 81 18 chr6 133561746 133562930 -15954107 + Lx6 LINE L1 5937 7423 -37 7 1604 1074 16 0 0 chr6 133562930 133563054 -15953983 + (GGAAA)n Simple_repeat Simple_repeat 2 125 0 7 1604 623 168 53 8 chr6 133563173 133563319 -15953718 + B2_Mm2 SINE B2 8 177 -16 7 1604 22 0 0 0 chr6 133563791 133563813 -15953224 + AT_rich Low_complexity Low_complexity 1 22 0 7 1604 6784 25 0 0 chr6 133564094 133564882 -15952155 + L1Md_F2 LINE L1 4799 5586 -297 8 1604 7944 49 2 0 chr6 133564882 133565862 -15951175 + L1Md_F2 LINE L1 5587 6568 -14 8 1604 23 0 0 0 chr6 133566793 133566816 -15950221 + AT_rich Low_complexity Low_complexity 1 23 0 8 1604 2177 297 72 59 chr6 133569445 133570934 -15946103 - L1_Rod LINE L1 -97 5750 4243 8 1604 306 353 103 37 chr6 133571302 133571451 -15945586 + Lx9 LINE L1 6309 6464 -1180 8 1604 474 18 0 0 chr6 133571451 133571506 -15945531 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1604 306 355 100 29 chr6 133571506 133571695 -15945342 + Lx9 LINE L1 6352 6628 -1016 8 1604 263 70 0 0 chr6 133572750 133572793 -15944244 - L1_Mus1 LINE L1 -2 6565 6523 8 1604 723 93 0 0 chr6 133572806 133572924 -15944113 + (TC)n Simple_repeat Simple_repeat 2 119 0 8 1604 477 0 0 0 chr6 133572924 133572976 -15944061 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1604 1091 197 22 114 chr6 133572978 133573293 -15943744 - RLTR9C LTR ERVK -4 389 104 8 1604 572 173 46 56 chr6 133573344 133573515 -15943522 - RLTR9F LTR ERVK -254 166 3 8 1604 495 0 0 0 chr6 133573517 133573572 -15943465 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1604 23 0 0 0 chr6 133573842 133573865 -15943172 + AT_rich Low_complexity Low_complexity 1 23 0 9 1604 285 256 0 35 chr6 133574479 133574564 -15942473 + GA-rich Low_complexity Low_complexity 3 84 0 9 1604 2131 217 27 52 chr6 133575197 133575325 -15941712 - Lx2A1 LINE L1 -1191 5817 5684 9 1604 324 64 0 0 chr6 133575325 133575372 -15941665 + (TTAG)n Simple_repeat Simple_repeat 2 48 0 9 1604 3921 77 8 8 chr6 133575372 133575896 -15941141 - L1_Mus1 LINE L1 -1 6566 6043 9 1604 2131 205 27 56 chr6 133575896 133576348 -15940689 - Lx2A1 LINE L1 -194 5683 5247 9 1604 7031 176 54 17 chr6 133576357 133578123 -15938914 - Lx2 LINE L1 0 6997 5171 9 1604 1147 197 145 0 chr6 133578121 133578370 -15938667 + Lx4A LINE L1 6321 6605 -453 9 1604 627 244 54 44 chr6 133578388 133578713 -15938324 - MYSERV16_I-int LTR ERVK -832 8127 7856 9 1604 312 311 66 16 chr6 133578714 133578835 -15938202 - RMER4A LTR ERVK -9 457 331 9 1604 2945 209 20 20 chr6 133579087 133579747 -15937290 - Lx3B LINE L1 -3 6970 6311 1 1604 644 284 56 55 chr6 133580209 133580679 -15936358 - MYSERV16_I-int LTR ERVK -1902 424 7 9 1604 502 107 39 0 chr6 133580875 133580978 -15936059 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1 1604 303 175 0 0 chr6 133580980 133581043 -15935994 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 1 1604 337 320 8 46 chr6 133581054 133581185 -15935852 - B1_Mur4 SINE Alu -6 144 19 1 1604 1810 171 17 3 chr6 133581473 133581824 -15935213 + L1_Mur2 LINE L1 4246 4601 -1276 1 1604 230 233 0 0 chr6 133581835 133581878 -15935159 + Lx4A LINE L1 6786 6828 -230 9 1604 257 48 0 45 chr6 133581901 133581945 -15935092 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 1 1604 4987 169 41 1 chr6 133582437 133583423 -15933614 + L1_Mur2 LINE L1 3577 4601 -1276 1 1604 959 251 110 8 chr6 133583434 133583679 -15933358 + Lx4A LINE L1 6786 7055 -3 1 1604 531 78 0 0 chr6 133584874 133584951 -15932086 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 1604 264 355 71 34 chr6 133584968 133585265 -15931772 - MLT1B LTR MaLR -26 364 57 1 1604 239 300 140 32 chr6 133585909 133586002 -15931035 + ID_B1 SINE B4 111 213 -11 1 1604 333 311 32 32 chr6 133586130 133586253 -15930784 + Lx8 LINE L1 7142 7264 -209 1 1604 432 0 0 0 chr6 133586308 133586356 -15930681 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 1 1604 265 237 0 0 chr6 133586356 133586415 -15930622 + CT-rich Low_complexity Low_complexity 1 59 0 1 1604 1571 211 11 17 chr6 133588195 133588556 -15928481 + RLTR15 LTR ERVK 1 359 0 1 1604 22 0 0 0 chr6 133589243 133589265 -15927772 + AT_rich Low_complexity Low_complexity 1 22 0 1 1604 407 266 14 7 chr6 133589364 133589508 -15927529 - MYSERV16_I-int LTR ERVK -2180 146 2 1 1604 7897 176 15 12 chr6 133589643 133591337 -15925700 + Lx2 LINE L1 5285 6995 -2 1 1604 2173 214 43 17 chr6 133591356 133591894 -15925143 + L1_Mur2 LINE L1 5253 5804 -73 1 1604 4114 99 3 34 chr6 133592117 133592732 -15924305 + L1_Mus2 LINE L1 5969 6564 -2 1 1604 180 0 0 0 chr6 133592735 133592755 -15924282 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1604 197 143 48 0 chr6 133593129 133593171 -15923866 + CT-rich Low_complexity Low_complexity 1 44 0 1 1604 204 40 0 0 chr6 133594138 133594163 -15922874 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1604 344 218 0 19 chr6 133594204 133594307 -15922730 + Lx LINE L1 6554 6654 0 1 1604 30910 82 25 5 chr6 133595306 133600166 -15916871 + L1Md_F2 LINE L1 413 5585 -298 1 1604 7522 72 11 0 chr6 133600167 133601150 -15915887 + L1Md_F2 LINE L1 5587 6580 -2 1 1604 264 280 0 0 chr6 133601792 133601867 -15915170 - L1_Rod LINE L1 0 5847 5773 1 1604 2075 314 53 46 chr6 133601890 133603388 -15913649 + L1_Rod LINE L1 4243 5750 -97 1 1604 21 0 0 0 chr6 133604052 133604073 -15912964 + AT_rich Low_complexity Low_complexity 1 21 0 1 1604 1185 138 25 5 chr6 133604567 133604764 -15912273 - RLTR13D6 LTR ERVK 0 902 702 1 1604 453 49 0 0 chr6 133604764 133604825 -15912212 - RLTR13D6 LTR ERVK -840 62 2 1 1604 809 128 165 13 chr6 133606693 133606851 -15910186 - B2_Mm2 SINE B2 -11 184 3 1 1604 1105 309 50 27 chr6 133606996 133608132 -15908905 - Lx5 LINE L1 -27 7023 5936 1 1604 180 158 0 0 chr6 133608703 133608741 -15908296 + (CTG)n Simple_repeat Simple_repeat 1 38 0 1 1604 226 328 33 41 chr6 133608742 133608863 -15908174 - PB1D9 SINE Alu 0 120 1 1 1604 182 132 53 0 chr6 133608877 133608915 -15908122 + CT-rich Low_complexity Low_complexity 4 43 0 1 1604 1520 151 20 0 chr6 133609930 133610181 -15906856 + Lx3C LINE L1 6557 6812 -164 1 1604 3891 157 60 5 chr6 133610218 133611001 -15906036 + L1_Mur2 LINE L1 3778 4603 -1274 1 1604 845 272 110 8 chr6 133611010 133611255 -15905782 + Lx4A LINE L1 6786 7055 -3 1 1604 24 32 0 0 chr6 133611455 133611486 -15905551 + AT_rich Low_complexity Low_complexity 1 31 0 1 1604 227 29 57 0 chr6 133611798 133611833 -15905204 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1604 255 114 0 0 chr6 133612480 133612524 -15904513 + (CAAAC)n Simple_repeat Simple_repeat 5 48 0 1 1604 233 245 0 0 chr6 133612528 133612581 -15904456 + A-rich Low_complexity Low_complexity 1 53 0 1 1604 1491 22 22 0 chr6 133613046 133613229 -15903808 - L1Md_F2 LINE L1 -14 6568 6382 1 1604 302 268 103 11 chr6 133613699 133613786 -15903251 + ID_B1 SINE B4 128 222 -2 1 1604 32 43 0 0 chr6 133613803 133613849 -15903188 + AT_rich Low_complexity Low_complexity 1 46 0 1 1604 545 199 7 0 chr6 133614042 133614183 -15902854 + CT-rich Low_complexity Low_complexity 1 142 0 1 1604 22 0 0 0 chr6 133614607 133614629 -15902408 + AT_rich Low_complexity Low_complexity 1 22 0 1 1604 651 276 23 26 chr6 133615149 133615413 -15901624 - MYSERV16_I-int LTR ERVK -1104 1222 960 1 1604 1601 140 118 4 chr6 133615733 133616012 -15901025 + RLTR10E LTR ERVK 1 311 0 1 1604 2601 169 21 4 chr6 133616201 133616681 -15900356 - Lx3B LINE L1 -171 6802 6315 1 1604 2984 167 8 0 chr6 133617651 133618177 -15898860 - L1_Mm LINE L1 -113 5770 5241 1 1604 444 141 0 0 chr6 133618204 133618296 -15898741 - L1_Mus4 LINE L1 0 6636 6545 1 1604 963 154 6 9 chr6 133618296 133618491 -15898546 - Lx3B LINE L1 -1004 5977 5789 1 1604 828 290 32 16 chr6 133618471 133618720 -15898317 + Lx4A LINE L1 6805 7057 -1 1 1604 24 32 0 0 chr6 133618741 133618772 -15898265 + AT_rich Low_complexity Low_complexity 1 31 0 1 1604 362 196 10 10 chr6 133619159 133619262 -15897775 - L1_Mus3 LINE L1 0 6638 6536 1 1604 342 186 0 0 chr6 133619302 133619388 -15897649 + CT-rich Low_complexity Low_complexity 1 86 0 1 1604 36833 64 3 2 chr6 133619392 133625591 -15891446 - L1Md_F3 LINE L1 0 6584 422 1 1604 2345 31 7 14 chr6 133625618 133625914 -15891123 - L1Md_F3 LINE L1 -1 6583 6290 1 1604 1150 311 32 35 chr6 133626818 133628001 -15889036 + Lx5 LINE L1 5934 7031 -19 1 1604 771 156 149 6 chr6 133628145 133628306 -15888731 + B2_Mm2 SINE B2 3 186 -9 1 1604 2169 138 21 81 chr6 133628360 133628778 -15888259 - RLTR9C LTR ERVK 0 393 1 1 1604 243 0 0 0 chr6 133629196 133629223 -15887814 + (TATAA)n Simple_repeat Simple_repeat 3 29 0 1 1604 242 93 0 0 chr6 133630208 133630251 -15886786 - L1_Mus1 LINE L1 -2 6565 6523 1 1604 867 94 0 0 chr6 133630259 133630386 -15886651 + (TTC)n Simple_repeat Simple_repeat 3 129 0 1 1604 567 0 0 0 chr6 133630386 133630449 -15886588 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 1604 22 0 0 0 chr6 133630742 133630764 -15886273 + AT_rich Low_complexity Low_complexity 1 22 0 1 1604 4813 59 0 0 chr6 133631259 133631868 -15885169 - L1Md_F2 LINE L1 -518 5365 4757 1 1604 1821 46 0 0 chr6 133631868 133632086 -15884951 + L1Md_F2 LINE L1 5369 5586 -297 1 1604 7992 53 0 4 chr6 133632086 133633084 -15883953 + L1Md_F2 LINE L1 5587 6580 -2 1 1604 213 269 0 0 chr6 133633237 133633315 -15883722 + GA-rich Low_complexity Low_complexity 1 78 0 1 1604 1516 93 63 28 chr6 133633371 133633625 -15883412 + L1_Mus1 LINE L1 6305 6567 0 1 1604 2323 202 32 11 chr6 133633848 133634373 -15882664 - L1_Mur2 LINE L1 -96 5781 5246 1 1604 7005 155 48 5 chr6 133634382 133635622 -15881415 - Lx2 LINE L1 0 6997 5705 1 1604 1016 200 7 82 chr6 133635619 133635913 -15881124 - Lx2 LINE L1 -435 5442 5171 1 1604 724 275 145 4 chr6 133635909 133636163 -15880874 + Lx5 LINE L1 6296 6606 -394 1 1604 436 210 7 92 chr6 133636336 133636369 -15880668 - MYSERV-int LTR ERVK -1097 5453 5429 1 1604 1062 93 0 0 chr6 133636369 133636509 -15880528 + B1_Mm SINE Alu 2 141 -6 1 1604 414 0 0 0 chr6 133636511 133636557 -15880480 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1 1604 436 210 7 92 chr6 133636557 133636672 -15880365 - MYSERV-int LTR ERVK -1122 5428 5315 1 1604 331 287 69 0 chr6 133636675 133636776 -15880261 - RMER4A LTR ERVK -28 438 331 1 1604 351 0 0 0 chr6 133637015 133637054 -15879983 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1604 1060 66 0 21 chr6 133637054 133637194 -15879843 - B1_Mus1 SINE Alu -10 138 2 1 1604 3074 207 19 12 chr6 133637255 133637905 -15879132 - Lx3B LINE L1 -3 6970 6317 1 1604 822 274 43 31 chr6 133638423 133638845 -15878192 - MYSERV-int LTR ERVK -1914 4636 4293 1 1604 266 151 54 14 chr6 133639044 133639118 -15877919 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 1 1604 190 156 0 30 chr6 133639120 133639186 -15877851 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1604 273 71 0 79 chr6 133639192 133639268 -15877769 + (TATAG)n Simple_repeat Simple_repeat 1 70 0 1 1604 465 272 8 53 chr6 133639282 133639414 -15877623 - B1_Mur4 SINE Alu -6 144 19 1 1604 543 236 154 34 chr6 133639976 133640042 -15876995 - MYSERV6-int LTR ERVK -2243 6716 6645 1 1604 186 43 0 0 chr6 133640042 133640065 -15876972 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1604 543 236 154 34 chr6 133640065 133640265 -15876772 - MYSERV6-int LTR ERVK -2315 6644 6419 1 1604 1563 190 42 34 chr6 133640984 133641338 -15875699 - RLTR15 LTR ERVK -2 357 1 1 1604 254 239 15 0 chr6 133642334 133642401 -15874636 + GA-rich Low_complexity Low_complexity 1 68 0 1 1604 333 325 39 39 chr6 133642458 133642586 -15874451 - Lx8 LINE L1 -209 7264 7137 1 1604 22 0 0 0 chr6 133642636 133642658 -15874379 + AT_rich Low_complexity Low_complexity 1 22 0 1 1604 332 200 123 0 chr6 133642705 133642770 -15874267 - ID_B1 SINE B4 -7 217 145 1 1604 278 277 173 29 chr6 133642770 133642804 -15874233 - B1_Mur1 SINE Alu -2 142 29 1 1604 2295 194 37 14 chr6 133643531 133644017 -15873020 + Lx2 LINE L1 6501 6997 0 1 1604 2259 204 32 17 chr6 133644027 133644555 -15872482 + L1_Mur2 LINE L1 5246 5781 -96 1 1604 205 313 30 0 chr6 133645253 133645320 -15871717 + CT-rich Low_complexity Low_complexity 2 70 0 1 1604 207 0 0 0 chr6 133646216 133646239 -15870798 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1604 808 65 16 0 chr6 133646239 133646362 -15870675 + (GA)n Simple_repeat Simple_repeat 2 127 0 1 1604 387 172 75 0 chr6 133646401 133646494 -15870543 + L1_Mus4 LINE L1 6536 6635 -1 1 1604 3688 109 34 29 chr6 133646809 133647395 -15869642 + RLTR1D LTR ERV1 1 589 -16 1 1604 21 0 0 0 chr6 133647498 133647519 -15869518 + AT_rich Low_complexity Low_complexity 1 21 0 1 1604 557 335 61 0 chr6 133648257 133648502 -15868535 - Lx8 LINE L1 -1003 6470 6211 1 1604 525 288 69 31 chr6 133648925 133649315 -15867722 + L1_Mur3 LINE L1 4238 4642 -1238 2 1604 596 313 82 39 chr6 133649404 133649793 -15867244 + L1_Rod LINE L1 5345 5750 -97 2 1604 23 0 0 0 chr6 133652417 133652440 -15864597 + AT_rich Low_complexity Low_complexity 1 23 0 2 1604 604 144 42 8 chr6 133654195 133654314 -15862723 - B2_Mm2 SINE B2 -70 125 3 2 1604 1550 320 99 21 chr6 133654443 133655601 -15861436 - Lx6 LINE L1 -28 7432 5960 2 1604 381 123 0 0 chr6 133656213 133656278 -15860759 + (TTG)n Simple_repeat Simple_repeat 2 66 0 2 1604 235 301 24 12 chr6 133656388 133656472 -15860565 + CT-rich Low_complexity Low_complexity 3 87 0 2 1604 329 281 50 66 chr6 133657017 133657215 -15859822 + RLTR46 LTR ERVK 126 320 0 2 1604 501 136 29 0 chr6 133659220 133659323 -15857714 + GA-rich Low_complexity Low_complexity 2 107 0 2 1604 279 296 45 26 chr6 133659677 133659833 -15857204 + RLTR18B LTR ERVK 219 377 -135 2 1604 4365 160 65 27 chr6 133659920 133660897 -15856140 + L1_Mur2 LINE L1 1975 2989 -2888 2 1604 21 36 0 0 chr6 133661498 133661526 -15855511 + AT_rich Low_complexity Low_complexity 1 28 0 2 1604 978 99 35 0 chr6 133661526 133661667 -15855370 - B1_Mus2 SINE Alu 0 147 2 2 1604 183 80 0 0 chr6 133662216 133662241 -15854796 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 1604 1327 90 0 11 chr6 133662244 133662424 -15854613 - B2_Mm2 SINE B2 -16 179 2 2 1604 3213 3 0 0 chr6 133662516 133662874 -15854163 - L1Md_A LINE L1 0 6582 6225 2 1604 324 269 47 60 chr6 133663799 133663949 -15853088 - L1MC5 LINE L1 -446 7515 7368 2 1604 317 297 25 67 chr6 133663974 133664093 -15852944 - ID_B1 SINE B4 -9 215 102 2 1604 1175 319 24 14 chr6 133664093 133664674 -15852363 - Lx6 LINE L1 -70 7390 6454 2 1604 525 163 53 18 chr6 133664675 133664844 -15852193 + T-rich Low_complexity Low_complexity 1 175 0 2 1604 575 328 47 19 chr6 133664870 133665295 -15851742 - Lx6 LINE L1 -757 6703 6025 2 1604 8606 39 1 0 chr6 133665395 133666440 -15850597 + L1Md_F2 LINE L1 4541 5586 -297 2 1604 8456 55 2 2 chr6 133666440 133667435 -15849602 + L1Md_F2 LINE L1 5587 6581 -1 2 1604 21 57 0 0 chr6 133667582 133667617 -15849420 + AT_rich Low_complexity Low_complexity 1 35 0 2 1604 995 236 55 0 chr6 133667641 133667840 -15849197 - B3 SINE B2 -5 211 2 2 1604 1814 201 30 27 chr6 133668025 133668393 -15848644 + RLTR17 LTR ERVK 324 692 0 2 1604 216 97 0 0 chr6 133668406 133668437 -15848600 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1604 648 26 0 0 chr6 133668505 133668583 -15848454 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1604 504 0 0 0 chr6 133668583 133668638 -15848399 + (GA)n Simple_repeat Simple_repeat 2 57 0 2 1604 277 185 354 0 chr6 133669035 133669100 -15847937 + URR1A DNA MER1_type 1 88 -138 2 1604 849 129 6 104 chr6 133669100 133669273 -15847764 + RLTR6_Mm LTR ERV1 1 156 -498 2 1604 597 219 208 32 chr6 133669286 133669565 -15847472 + RLTR6_Mm LTR ERV1 276 603 -51 2 1604 1662 77 101 114 chr6 133669608 133669726 -15847311 + MMVL30-int LTR ERV1 60 283 -3415 2 1604 232 118 0 0 chr6 133669726 133669760 -15847277 + tRNA-Arg-AGG tRNA tRNA 43 76 0 2 1604 1662 77 101 114 chr6 133669760 133670001 -15847036 + MMVL30-int LTR ERV1 284 747 -2951 2 1604 5015 97 28 11 chr6 133670042 133670761 -15846276 + MMVL30-int LTR ERV1 738 1468 -2230 2 1604 16918 33 83 17 chr6 133671023 133673144 -15843893 + MMVL30-int LTR ERV1 1437 3698 0 2 1604 849 129 6 104 chr6 133673144 133673317 -15843720 + RLTR6_Mm LTR ERV1 1 156 -498 2 1604 574 183 241 61 chr6 133673330 133673592 -15843445 + RLTR6_Mm LTR ERV1 276 584 -70 2 1604 814 157 7 0 chr6 133673591 133673731 -15843306 + URR1A DNA MER1_type 84 224 -2 2 1604 614 216 96 15 chr6 133673802 133673938 -15843099 + B1F SINE Alu 1 147 -2 2 1604 269 305 194 17 chr6 133674485 133674722 -15842315 + MLT1D LTR MaLR 1 279 -226 2 1604 257 322 163 7 chr6 133675116 133675263 -15841774 + LTR41B LTR ERVL 584 753 -5 2 1604 954 214 35 10 chr6 133675533 133675736 -15841301 - MTC LTR MaLR 0 421 214 2 1604 378 0 0 0 chr6 133676008 133676050 -15840987 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1604 903 19 0 0 chr6 133676053 133676158 -15840879 + (GA)n Simple_repeat Simple_repeat 2 106 0 2 1604 1395 77 33 0 chr6 133676211 133676394 -15840643 - L1_Mus2 LINE L1 0 6566 6378 2 1604 21 0 0 0 chr6 133677035 133677056 -15839981 + AT_rich Low_complexity Low_complexity 1 21 0 2 1604 300 297 72 36 chr6 133677348 133677500 -15839537 + MIR3 SINE MIR 13 163 -45 2 1604 3159 71 12 10 chr6 133678917 133679316 -15837721 + MTB LTR MaLR 1 400 0 2 1604 837 0 0 0 chr6 133680124 133680217 -15836820 + (GAAAA)n Simple_repeat Simple_repeat 5 97 0 2 1604 2150 162 22 14 chr6 133680276 133680644 -15836393 - ORR1C1 LTR MaLR 0 378 8 2 1604 796 224 0 7 chr6 133681078 133681226 -15835811 - B1_Mus1 SINE Alu -1 147 1 2 1604 639 251 52 68 chr6 133681228 133681420 -15835617 - B3A SINE B2 -1 197 9 2 1604 25 0 0 0 chr6 133681427 133681452 -15835585 + AT_rich Low_complexity Low_complexity 1 25 0 2 1604 20427 76 21 7 chr6 133682394 133685935 -15831102 + MERVK26-int LTR ERVK 3330 6917 -2 2 1604 2435 226 91 25 chr6 133685941 133686543 -15830494 + RLTR26 LTR ERVK 1 642 0 2 1604 32726 81 10 2 chr6 133687470 133692455 -15824582 + L1Md_F2 LINE L1 386 5588 -298 2 200 8377 60 1 2 chr6 133692456 133693453 -15823584 + L1Md_F2 LINE L1 5590 6585 0 2 1605 336 233 29 19 chr6 133693470 133693575 -15823462 + Lx5 LINE L1 5986 6091 -959 2 1605 387 0 0 0 chr6 133693642 133693685 -15823352 + (TAA)n Simple_repeat Simple_repeat 3 45 0 2 1605 206 136 0 22 chr6 133693691 133693736 -15823301 + (TTA)n Simple_repeat Simple_repeat 1 44 0 2 1605 4201 73 33 0 chr6 133693748 133694257 -15822780 - L1Md_F2 LINE L1 -11 6571 6046 2 1605 1400 272 2 2 chr6 133694770 133695194 -15821843 + L1_Mur3 LINE L1 921 1344 -6384 2 1605 38810 14 2 7 chr6 133695208 133700623 -15816414 + L1Md_A LINE L1 202 5586 -297 2 1605 9340 12 0 0 chr6 133700623 133701607 -15815430 + L1Md_A LINE L1 5587 6570 -12 2 1605 310 206 0 4 chr6 133701728 133701797 -15815240 + L1_Mur3 LINE L1 2094 2160 -3723 2 1605 329 262 7 2 chr6 133701799 133701911 -15815126 + L1VL1 LINE L1 145 275 -6147 2 1605 5272 77 15 7 chr6 133701935 133702075 -15814962 - L1Md_F2 LINE L1 0 6582 6444 2 1605 309 26 0 0 chr6 133702075 133702113 -15814924 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1605 5272 77 15 7 chr6 133702113 133702644 -15814393 - L1Md_F2 LINE L1 -139 6443 5907 2 1605 5860 153 20 15 chr6 133702689 133704303 -15812734 + L1Md_F LINE L1 149 2205 -3678 2 1605 326 269 0 0 chr6 133705296 133705363 -15811674 + RSINE1 SINE B4 61 127 -38 2 1605 8203 51 2 1 chr6 133707498 133708615 -15808422 - L1Md_F2 LINE L1 -3 6582 5465 2 1605 13133 67 5 10 chr6 133708612 133710659 -15806378 - L1Md_F2 LINE L1 -2961 2925 792 2 1605 446 180 56 0 chr6 133710657 133710746 -15806291 - L1Md_F2 LINE L1 -5987 632 539 2 1605 299 211 22 11 chr6 133710751 133710842 -15806195 - L1VL1 LINE L1 -6329 93 2 2 1605 3659 58 12 68 chr6 133712378 133712881 -15804156 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1605 893 125 149 6 chr6 133713157 133713318 -15803719 + B2_Mm2 SINE B2 3 186 -9 2 1605 25 0 0 0 chr6 133715021 133715046 -15801991 + AT_rich Low_complexity Low_complexity 1 25 0 2 1605 2698 276 75 57 chr6 133717622 133719122 -15797915 - L1_Rod LINE L1 -95 5752 4227 2 1605 289 202 0 31 chr6 133719127 133719202 -15797835 + Lx2A LINE L1 5802 5873 -1185 2 1605 487 347 87 20 chr6 133719399 133719699 -15797338 + Lx9 LINE L1 6309 6628 -1016 2 1605 21 0 0 0 chr6 133720380 133720401 -15796636 + AT_rich Low_complexity Low_complexity 1 21 0 2 1605 283 67 0 0 chr6 133720775 133720820 -15796217 - L1_Mus1 LINE L1 0 6567 6523 2 1605 561 94 0 0 chr6 133720829 133720914 -15796123 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 1605 368 67 17 0 chr6 133720919 133720979 -15796058 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1605 23 0 0 0 chr6 133721258 133721281 -15795756 + AT_rich Low_complexity Low_complexity 1 23 0 2 1605 314 256 24 0 chr6 133721911 133721993 -15795044 + GA-rich Low_complexity Low_complexity 1 84 0 2 1605 2752 65 79 10 chr6 133722352 133722755 -15794282 - L1_Mus1 LINE L1 -279 6288 5858 2 1605 1001 86 7 0 chr6 133722748 133722888 -15794149 + L1_Mus1 LINE L1 6298 6438 -129 2 1605 4999 162 55 5 chr6 133722885 133723866 -15793171 - Lx2 LINE L1 -263 6734 5705 2 1605 814 214 12 70 chr6 133723855 133724111 -15792926 - Lx2 LINE L1 -424 5462 5222 2 1605 373 268 8 31 chr6 133724498 133724625 -15792412 - RLTR18-int LTR ERVK -518 4843 4720 2 1605 465 226 118 98 chr6 133724626 133724931 -15792106 - MYSERV6-int LTR ERVK -2243 6716 6406 2 1605 1473 219 14 25 chr6 133725623 133725984 -15791053 - RLTR15 LTR ERVK -2 357 1 2 1605 265 239 0 29 chr6 133726980 133727049 -15789988 + GA-rich Low_complexity Low_complexity 1 67 0 2 1605 371 284 39 39 chr6 133727110 133727238 -15789799 - Lx8 LINE L1 -209 7264 7137 2 1605 22 0 0 0 chr6 133727289 133727311 -15789726 + AT_rich Low_complexity Low_complexity 1 22 0 2 1605 258 292 131 30 chr6 133727358 133727457 -15789580 - ID_B1 SINE B4 -7 217 109 2 1605 233 355 74 19 chr6 133728128 133728398 -15788639 + MLT1B LTR MaLR 72 356 -34 2 1605 29 60 0 0 chr6 133729025 133729075 -15787962 + AT_rich Low_complexity Low_complexity 1 50 0 2 1605 872 310 11 0 chr6 133729105 133729379 -15787658 + Lx6 LINE L1 7154 7430 -30 2 1605 330 266 0 48 chr6 133729384 133729467 -15787570 + ID_B1 SINE B4 137 215 -9 2 1605 369 342 26 21 chr6 133730585 133730776 -15786261 - RLTR18 LTR ERVK -84 428 237 2 1605 456 307 91 59 chr6 133730885 133731138 -15785899 - RLTR18 LTR ERVK -334 282 22 2 1605 903 124 0 0 chr6 133731150 133731295 -15785742 + (TC)n Simple_repeat Simple_repeat 2 146 0 2 1605 1155 294 54 11 chr6 133731442 133731889 -15785148 - Lx7 LINE L1 -349 7347 6882 2 1605 321 305 12 0 chr6 133732882 133732964 -15784073 + RSINE1 SINE B4 61 143 -22 2 1605 261 274 12 12 chr6 133735251 133735336 -15781701 + GA-rich Low_complexity Low_complexity 2 86 0 2 1605 278 348 42 59 chr6 133735339 133735458 -15781579 + PB1D9 SINE Alu 2 118 -2 2 1605 252 185 0 0 chr6 133735458 133735512 -15781525 + (CAA)n Simple_repeat Simple_repeat 1 54 0 2 1605 1604 318 102 12 chr6 133736077 133737230 -15779807 + Lx6 LINE L1 5934 7432 -28 2 1605 253 329 27 0 chr6 133737259 133737332 -15779705 + ID_B1 SINE B4 143 217 -7 2 1605 706 154 180 7 chr6 133737361 133737511 -15779526 + B2_Mm2 SINE B2 5 180 -15 2 1605 2237 67 10 0 chr6 133737791 133738088 -15778949 + L1Md_F2 LINE L1 6283 6582 0 2 1605 843 96 0 0 chr6 133738137 133738273 -15778764 + (TC)n Simple_repeat Simple_repeat 2 137 0 2 1605 459 0 0 0 chr6 133738278 133738329 -15778708 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1605 4532 170 34 31 chr6 133739051 133739999 -15777038 - RLTR13A2 LTR ERVK 0 958 8 2 1605 283 282 24 0 chr6 133740189 133740274 -15776763 + GA-rich Low_complexity Low_complexity 2 88 0 2 1605 1914 199 85 12 chr6 133740933 133741455 -15775582 - Lx2B LINE L1 -1188 5812 5246 3 1605 8097 153 18 11 chr6 133741464 133743274 -15773763 - Lx2 LINE L1 0 6997 5192 3 1605 3382 182 43 26 chr6 133743274 133744057 -15772980 - RLTR13D3 LTR ERVK 0 1114 2 3 1605 2321 239 63 12 chr6 133744070 133744757 -15772280 + Lx4A LINE L1 6295 7058 0 3 1605 423 0 0 0 chr6 133744770 133744817 -15772220 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1605 5956 98 1 3 chr6 133744931 133745813 -15771224 + L1_Mm LINE L1 4758 5637 -246 3 1605 941 183 116 31 chr6 133746241 133746534 -15770503 - MYSERV6-int LTR ERVK -2236 6723 6406 3 1605 477 286 42 42 chr6 133746564 133746754 -15770283 - RLTR15 LTR ERVK -169 190 1 3 1605 21 0 0 0 chr6 133747589 133747610 -15769427 + AT_rich Low_complexity Low_complexity 1 21 0 3 1605 31 26 0 0 chr6 133748044 133748082 -15768955 + AT_rich Low_complexity Low_complexity 1 38 0 3 1605 222 62 0 0 chr6 133748471 133748503 -15768534 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1605 216 0 0 0 chr6 133748503 133748527 -15768510 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1605 840 71 0 0 chr6 133748536 133748648 -15768389 + (GGAA)n Simple_repeat Simple_repeat 1 112 0 3 1605 341 323 24 24 chr6 133748708 133748835 -15768202 - Lx8 LINE L1 -210 7263 7137 3 1605 241 347 95 0 chr6 133748958 133749053 -15767984 - ID_B1 SINE B4 -7 217 114 3 1605 274 362 71 32 chr6 133749715 133749995 -15767042 + MLT1B LTR MaLR 74 364 -26 3 1605 2900 56 0 0 chr6 133750161 133750539 -15766498 - L1Md_F2 LINE L1 -490 6092 5715 3 1605 3437 81 6 11 chr6 133750539 133751011 -15766026 + L1Md_F2 LINE L1 6113 6582 0 3 1605 31 26 0 0 chr6 133752250 133752288 -15764749 + AT_rich Low_complexity Low_complexity 1 38 0 3 1605 32668 70 11 8 chr6 133752294 133757651 -15759386 + L1Md_A LINE L1 216 5586 -297 3 1605 8520 21 9 0 chr6 133757652 133758638 -15758399 + L1Md_A LINE L1 5588 6582 0 3 1605 12772 60 1 133 chr6 133758638 133760304 -15756733 + L1Md_F2 LINE L1 3926 5331 -552 3 1605 7781 53 5 3 chr6 133760304 133761285 -15755752 + L1Md_F2 LINE L1 5587 6569 -13 3 1605 12772 46 5 63 chr6 133761285 133761910 -15755127 + L1Md_F2 LINE L1 5332 5920 -662 3 1605 513 0 0 0 chr6 133761910 133761967 -15755070 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 3 1605 245 302 22 44 chr6 133761992 133762082 -15754955 + PB1D9 SINE Alu 2 89 -31 3 1605 979 200 23 23 chr6 133762082 133762302 -15754735 + Lx4A LINE L1 6839 7058 0 3 1605 214 296 0 0 chr6 133762711 133762765 -15754272 + ID SINE ID 30 83 -141 3 1605 1283 90 40 0 chr6 133763639 133763816 -15753221 - B2_Mm2 SINE B2 -7 188 5 3 1605 822 251 65 5 chr6 133764030 133764230 -15752807 + RLTR16 LTR ERVK 1 212 -293 3 1605 317 268 36 134 chr6 133764242 133764466 -15752571 + RLTR16 LTR ERVK 292 493 -12 3 1605 1209 211 45 34 chr6 133765033 133765387 -15751650 + RMER3D-int LTR ERVK 1021 1378 -1464 3 1605 27303 38 1 0 chr6 133765434 133770716 -15746321 + L1Md_T LINE L1 1 4820 -1066 3 1605 2975 15 3 0 chr6 133770716 133771052 -15745985 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1605 53228 19 16 6 chr6 133771052 133777461 -15739576 - IAPEz-int LTR ERVK 0 6481 8 3 1605 2993 18 3 0 chr6 133777461 133777797 -15739240 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1605 6991 12 0 0 chr6 133777797 133778572 -15738465 + L1Md_T LINE L1 4815 5589 -297 3 1605 9171 5 0 0 chr6 133778572 133779568 -15737469 + L1Md_T LINE L1 5590 6585 0 3 1605 912 172 60 15 chr6 133779595 133779835 -15737202 + MYSERV16_I-int LTR ERVK 323 544 -1782 3 1605 1170 186 49 89 chr6 133779852 133780301 -15736736 + MYSERV16_I-int LTR ERVK 650 933 -1393 3 1605 265 246 0 32 chr6 133780566 133780629 -15736408 + RSINE1 SINE B4 56 116 -49 3 1605 204 125 0 0 chr6 133782331 133782363 -15734674 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1605 38002 74 23 13 chr6 133782762 133789034 -15728003 - L1Md_F3 LINE L1 -14 6570 233 3 1605 280 229 14 28 chr6 133789465 133789537 -15727500 + B1_Mur1 SINE Alu 78 148 -1 3 1605 1370 93 0 35 chr6 133789700 133789900 -15727137 + B2_Mm2 SINE B2 2 194 -1 3 1605 613 342 21 11 chr6 133790530 133790719 -15726318 + ID_B1 SINE B4 30 220 -4 3 1605 416 294 9 0 chr6 133791329 133791438 -15725599 - ID_B1 SINE B4 -4 220 111 3 1605 180 370 8 8 chr6 133791709 133791829 -15725208 - L2 LINE L2 -524 2895 2776 3 1605 21 36 0 0 chr6 133791899 133791927 -15725110 + AT_rich Low_complexity Low_complexity 1 28 0 3 1605 242 325 84 39 chr6 133792078 133792363 -15724674 + MLT1B LTR MaLR 56 353 -37 3 1605 602 274 88 125 chr6 133792676 133793005 -15724032 + Lx8 LINE L1 7135 7451 -22 3 1605 33178 83 1 16 chr6 133793073 133798434 -15718603 + L1Md_F2 LINE L1 307 5586 -297 3 1605 8250 34 10 8 chr6 133798434 133799414 -15717623 + L1Md_F2 LINE L1 5587 6568 -14 3 1605 705 225 14 7 chr6 133799565 133799708 -15717329 - RSINE1 SINE B4 -19 146 3 3 1605 188 34 0 33 chr6 133800330 133800360 -15716677 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1605 794 234 29 34 chr6 133800369 133800577 -15716460 + B3 SINE B2 2 208 -8 3 1605 454 224 0 57 chr6 133800876 133800999 -15716038 - PB1D10 SINE Alu 0 117 2 3 1605 607 200 27 0 chr6 133801318 133801428 -15715609 + B1_Mur2 SINE Alu 10 122 -27 3 1605 201 156 21 43 chr6 133801652 133801699 -15715338 + GA-rich Low_complexity Low_complexity 2 47 0 3 1605 459 52 0 0 chr6 133802627 133802685 -15714352 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1605 567 0 0 0 chr6 133802956 133803019 -15714018 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1605 651 108 0 0 chr6 133805571 133805673 -15711364 + (TG)n Simple_repeat Simple_repeat 2 103 0 3 1605 201 147 0 0 chr6 133806196 133806230 -15710807 + (GCATG)n Simple_repeat Simple_repeat 4 37 0 3 1605 188 67 0 32 chr6 133806267 133806298 -15710739 + (GAA)n Simple_repeat Simple_repeat 1 30 0 3 1605 882 215 31 63 chr6 133806756 133806979 -15710058 + B3 SINE B2 1 216 0 3 1605 24 0 0 0 chr6 133807023 133807047 -15709990 + AT_rich Low_complexity Low_complexity 1 24 0 3 1605 4974 38 0 2 chr6 133807238 133807825 -15709212 - L1Md_F2 LINE L1 -6 6576 5991 3 1605 195 42 0 0 chr6 133808036 133808060 -15708977 + (TTG)n Simple_repeat Simple_repeat 3 26 0 3 1605 288 0 0 0 chr6 133808060 133808092 -15708945 + (ATG)n Simple_repeat Simple_repeat 1 32 0 3 1605 792 153 107 0 chr6 133808134 133808265 -15708772 - B1_Mus2 SINE Alu -1 146 2 3 1605 494 266 132 24 chr6 133808380 133808669 -15708368 + L1MA9 LINE L1 5539 5858 -454 3 1605 23 33 0 0 chr6 133808774 133808804 -15708233 + AT_rich Low_complexity Low_complexity 1 30 0 3 1605 266 288 0 0 chr6 133809550 133809616 -15707421 + ID4 SINE ID 4 69 -14 3 1605 240 43 21 42 chr6 133809713 133809761 -15707276 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1605 1506 195 263 2 chr6 133809774 133810196 -15706841 + MT2A LTR ERVL 1 532 -1 3 1605 680 65 0 0 chr6 133810649 133810742 -15706295 + L1_Mus1 LINE L1 6475 6567 0 3 1605 216 0 0 0 chr6 133811220 133811244 -15705793 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1605 4372 129 3 21 chr6 133811264 133811963 -15705074 - Lx3B LINE L1 -5 6968 6283 3 1605 558 291 126 0 chr6 133812974 133813149 -15703888 + ID_B1 SINE B4 7 203 -21 3 1605 330 197 281 14 chr6 133813271 133813417 -15703620 + B4A SINE B4 46 230 -62 3 1605 244 310 0 0 chr6 133813918 133813989 -15703048 + L1VL4 LINE L1 528 598 -5704 3 1605 1645 27 0 0 chr6 133814246 133814431 -15702606 - B2_Mm1a SINE B2 -7 186 2 3 1605 1377 94 5 0 chr6 133815504 133815696 -15701341 + B2_Mm1a SINE B2 1 193 0 3 1605 208 173 19 0 chr6 133816536 133816588 -15700449 + T-rich Low_complexity Low_complexity 6 58 0 3 1605 903 27 0 0 chr6 133818914 133819024 -15698013 + (TCTCCC)n Simple_repeat Simple_repeat 3 112 0 3 1605 318 313 0 0 chr6 133819085 133819168 -15697869 - PB1D10 SINE Alu -32 85 3 3 1605 225 0 0 0 chr6 133819246 133819271 -15697766 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1605 364 355 17 23 chr6 133819535 133819711 -15697326 + GA-rich Low_complexity Low_complexity 4 178 0 3 1605 218 105 0 26 chr6 133819721 133819760 -15697277 + (GGAA)n Simple_repeat Simple_repeat 4 41 0 3 1605 1744 64 29 21 chr6 133819849 133820087 -15696950 - L1_Mus1 LINE L1 0 6567 6328 3 1605 465 292 8 0 chr6 133821066 133821186 -15695851 + ID_B1 SINE B4 91 211 -13 3 1605 320 0 25 0 chr6 133821534 133821574 -15695463 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 1605 2230 184 7 30 chr6 133821656 133822094 -15694943 + Lx5 LINE L1 6620 7047 -3 3 1605 335 286 109 94 chr6 133822293 133822559 -15694478 - L1M3 LINE L1 -590 5599 5330 3 1605 189 0 0 0 chr6 133822564 133822585 -15694452 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1605 731 231 0 20 chr6 133822600 133822750 -15694287 - B3 SINE B2 -4 212 66 3 1605 432 0 0 0 chr6 133823020 133823068 -15693969 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 200 11652 79 9 72 chr6 133823090 133825062 -15691975 - RLTR22_Mur LTR ERVK 0 1848 1 3 1606 568 137 19 13 chr6 133825319 133825474 -15691563 + (TG)n Simple_repeat Simple_repeat 2 157 0 3 1606 617 225 14 12 chr6 133825532 133825659 -15691378 - B3 SINE B2 -31 164 46 3 1606 801 231 152 0 chr6 133825773 133826063 -15690974 - Lx9 LINE L1 0 7644 7311 3 1606 345 318 118 0 chr6 133826706 133826816 -15690221 - RSINE1 SINE B4 -31 134 12 3 1606 1100 62 7 7 chr6 133826880 133827027 -15690010 - B1_Mus2 SINE Alu 0 147 1 3 1606 231 222 48 0 chr6 133827027 133827090 -15689947 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 3 1606 607 306 59 0 chr6 133827099 133827269 -15689768 - B3A SINE B2 -16 182 3 3 1606 254 344 0 50 chr6 133827310 133827411 -15689626 - RSINE1 SINE B4 -2 163 68 3 1606 2699 65 144 0 chr6 133827483 133827850 -15689187 - L1_Mus1 LINE L1 -1 6566 6147 3 1606 203 186 0 48 chr6 133828053 133828115 -15688922 + T-rich Low_complexity Low_complexity 5 63 0 3 1606 225 0 0 0 chr6 133828322 133828347 -15688690 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 3 1606 284 323 58 36 chr6 133828373 133828511 -15688526 - B1F SINE Alu -8 141 1 4 1606 776 126 24 224 chr6 133829106 133829189 -15687848 + URR1A DNA MER1_type 1 70 -156 4 1606 2646 124 50 23 chr6 133829189 133829627 -15687410 + Lx LINE L1 6199 6648 -6 4 1606 776 126 24 224 chr6 133829627 133829755 -15687282 + URR1A DNA MER1_type 71 168 -58 4 1606 1894 148 19 63 chr6 133829755 133829985 -15687052 - RMER10B LTR ERVL 0 398 189 4 1606 1059 139 0 0 chr6 133829985 133830165 -15686872 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1606 1894 148 19 63 chr6 133830165 133830346 -15686691 - RMER10B LTR ERVL -210 188 5 4 1606 776 126 24 224 chr6 133830346 133830379 -15686658 + URR1A DNA MER1_type 169 197 -29 4 1606 767 159 0 105 chr6 133830407 133830569 -15686468 - B1_Mur2 SINE Alu 0 149 5 4 1606 21 0 0 0 chr6 133830616 133830637 -15686400 + AT_rich Low_complexity Low_complexity 1 21 0 4 1606 232 185 19 0 chr6 133831132 133831186 -15685851 + RLTR15 LTR ERVK 1 55 -304 4 1606 409 184 79 0 chr6 133831195 133831282 -15685755 + L1VL1 LINE L1 2 81 -6341 4 1606 2789 149 12 12 chr6 133831283 133831772 -15685265 + L1_Mus3 LINE L1 3206 3694 -2189 4 1606 7397 101 19 4 chr6 133831770 133832852 -15684185 + L1_Mus3 LINE L1 5538 6636 -2 4 1606 261 211 26 13 chr6 133832866 133832943 -15684094 + RLTR15 LTR ERVK 68 145 -214 4 1606 404 292 24 69 chr6 133833643 133833886 -15683151 - RMER12 LTR ERVK -150 1172 1007 4 1606 4868 65 0 31 chr6 133833886 133834505 -15682532 + L1Md_F2 LINE L1 5981 6580 -2 4 1606 404 324 39 93 chr6 133834505 133834529 -15682508 - RMER12 LTR ERVK -316 1006 980 4 1606 237 167 100 0 chr6 133834527 133834587 -15682450 - RLTR22_Mur LTR ERVK -566 1282 1217 4 1606 4938 160 5 12 chr6 133834734 133835582 -15681455 - L1_Mm LINE L1 -1821 4062 3221 4 1606 255 163 0 0 chr6 133835583 133835626 -15681411 - RMER13A LTR ERVK -723 137 95 4 1606 645 272 110 36 chr6 133836310 133836611 -15680426 + MLT1B LTR MaLR 60 382 -8 4 1606 990 129 0 0 chr6 133836982 133837183 -15679854 + (TG)n Simple_repeat Simple_repeat 1 201 0 4 1606 414 0 0 0 chr6 133837359 133837405 -15679632 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1606 489 222 102 8 chr6 133837432 133837550 -15679487 - Lx7 LINE L1 -389 7307 7179 4 1606 378 0 0 0 chr6 133837550 133837592 -15679445 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 1606 7699 90 10 3 chr6 133837597 133838635 -15678402 - L1_Mus3 LINE L1 -6 6632 5588 4 1606 544 45 157 11 chr6 133838654 133838743 -15678294 - L1Md_F2 LINE L1 0 6582 6481 4 1606 2243 92 0 0 chr6 133838743 133839049 -15677988 - L1_Mus3 LINE L1 -1590 4293 3988 4 1606 8384 176 126 8 chr6 133839051 133841353 -15675684 - L1VL2 LINE L1 -2331 3546 952 4 1606 14629 25 0 0 chr6 133841351 133843719 -15673318 - L1Md_T LINE L1 0 6582 4214 4 1606 28 0 0 0 chr6 133843724 133843752 -15673285 + AT_rich Low_complexity Low_complexity 1 28 0 4 1606 40398 30 1 7 chr6 133843849 133850034 -15667003 - L1Md_T LINE L1 0 6582 440 4 1606 4010 108 0 0 chr6 133850035 133850592 -15666445 - L1VL1 LINE L1 -5649 773 217 4 1606 249 301 0 0 chr6 133850599 133850672 -15666365 - Lx7 LINE L1 -507 7189 7117 4 1606 726 258 78 23 chr6 133850675 133850893 -15666144 - B4 SINE B4 -62 230 1 4 1606 395 219 12 0 chr6 133851286 133851368 -15665669 + MTEb LTR MaLR 297 379 0 4 1606 274 288 103 55 chr6 133851457 133851729 -15665308 + L1MC4 LINE L1 7758 8042 0 4 1606 7231 162 24 19 chr6 133852025 133853250 -15663787 + RLTR21 LTR ERVK 5 1239 -333 4 1606 279 93 0 0 chr6 133853250 133853293 -15663744 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1606 7231 127 87 24 chr6 133853293 133853521 -15663516 + RLTR21 LTR ERVK 1058 1300 -272 4 1606 435 19 0 0 chr6 133853521 133853573 -15663464 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1606 2724 125 91 25 chr6 133853573 133853840 -15663197 + RLTR21 LTR ERVK 1300 1572 0 4 1606 302 324 0 0 chr6 133855087 133855155 -15661882 + ID4_ SINE ID 8 75 -8 4 1606 260 294 138 9 chr6 133855314 133855468 -15661569 + ORR1E LTR MaLR 1 192 -167 4 1606 6516 83 24 3 chr6 133855752 133857385 -15659652 + L1VL2 LINE L1 177 1846 -1769 4 1606 31 44 0 0 chr6 133858160 133858205 -15658832 + AT_rich Low_complexity Low_complexity 1 45 0 4 1606 584 284 78 24 chr6 133858251 133858417 -15658620 + B3 SINE B2 17 191 -25 4 1606 1649 161 156 82 chr6 133858508 133858802 -15658235 - MTC LTR MaLR 0 421 82 4 1606 266 0 0 29 chr6 133858802 133858837 -15658200 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 4 1606 1649 161 156 82 chr6 133858837 133858849 -15658188 - MTC LTR MaLR -340 81 81 4 1606 922 193 193 0 chr6 133858849 133859030 -15658007 - B3 SINE B2 0 216 1 4 1606 1649 161 156 82 chr6 133859030 133859114 -15657923 - MTC LTR MaLR -340 81 1 4 1606 273 233 69 83 chr6 133859132 133859277 -15657760 - MIRm SINE MIR -129 147 5 4 1606 335 297 29 10 chr6 133859748 133859850 -15657187 - PB1D10 SINE Alu -9 108 5 4 1606 22 35 0 0 chr6 133859904 133859933 -15657104 + AT_rich Low_complexity Low_complexity 1 29 0 4 1606 22048 155 104 5 chr6 133859933 133864511 -15652526 - Lx3C LINE L1 -2 6974 1858 4 1606 3148 35 0 0 chr6 133864511 133864857 -15652180 - ORR1A0 LTR MaLR 0 346 1 4 1606 22048 162 86 4 chr6 133864857 133865844 -15651193 - Lx3C LINE L1 -4029 1857 866 4 1606 22 0 0 0 chr6 133866408 133866430 -15650607 + AT_rich Low_complexity Low_complexity 1 22 0 4 1606 1128 213 15 19 chr6 133866434 133866640 -15650397 - B3 SINE B2 -10 206 2 4 1606 690 284 12 12 chr6 133866753 133866917 -15650120 - RSINE1 SINE B4 0 165 2 4 1606 338 245 106 88 chr6 133867174 133867342 -15649695 - B4 SINE B4 -68 224 42 4 1606 449 47 0 15 chr6 133867369 133867434 -15649603 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 1606 384 302 0 0 chr6 133867583 133867669 -15649368 + ID_B1 SINE B4 132 217 -7 4 1606 324 0 0 0 chr6 133868109 133868145 -15648892 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 4 1606 1864 126 101 3 chr6 133869129 133869456 -15647581 - ORR1B2 LTR MaLR -8 359 1 4 1606 554 282 72 34 chr6 133869652 133869861 -15647176 + ID_B1 SINE B4 4 220 -4 4 1606 360 269 241 0 chr6 133869876 133870021 -15647016 + B3A SINE B2 4 183 -15 4 1606 23 54 0 0 chr6 133870054 133870091 -15646946 + AT_rich Low_complexity Low_complexity 1 37 0 4 1606 539 274 19 52 chr6 133870360 133870514 -15646523 - B1F2 SINE Alu 0 149 1 4 1606 24 53 0 0 chr6 133870671 133870709 -15646328 + AT_rich Low_complexity Low_complexity 1 38 0 4 1606 862 203 10 71 chr6 133871037 133871233 -15645804 + B3 SINE B2 21 204 -12 4 1606 226 250 126 29 chr6 133871237 133871340 -15645697 - L1M4 LINE L1 -694 5480 5368 4 1606 741 299 5 39 chr6 133871340 133871545 -15645492 + MTEb LTR MaLR 1 198 -181 4 1606 1041 50 0 0 chr6 133871548 133871688 -15645349 + (TC)n Simple_repeat Simple_repeat 2 141 0 4 1606 183 156 0 0 chr6 133871732 133871764 -15645273 + T-rich Low_complexity Low_complexity 1 32 0 4 1606 36730 69 2 14 chr6 133871874 133878062 -15638975 - L1Md_F2 LINE L1 -1 6581 469 4 1606 266 283 53 65 chr6 133878096 133878266 -15638771 - L1M4 LINE L1 -772 5374 5207 4 1606 1097 78 0 0 chr6 133878324 133878465 -15638572 - B1_Mus2 SINE Alu -2 145 5 4 1606 351 0 0 0 chr6 133878474 133878513 -15638524 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1606 458 232 53 18 chr6 133878513 133878627 -15638410 - PB1D7 SINE Alu -2 118 1 4 1606 1468 283 77 67 chr6 133878712 133878948 -15638089 - L1M4 LINE L1 -1062 5084 4859 4 1606 305 208 64 13 chr6 133878948 133879026 -15638011 + ID4_ SINE ID 2 83 0 4 1606 1468 283 77 67 chr6 133879026 133879553 -15637484 - L1M4 LINE L1 -1288 4858 4313 4 1606 361 320 32 16 chr6 133879561 133879685 -15637352 + RSINE1 SINE B4 11 136 -29 4 1606 805 293 46 40 chr6 133879711 133880084 -15636953 - L1M4 LINE L1 -1820 4326 3952 4 1606 812 85 0 8 chr6 133880086 133880204 -15636833 + B2_Mm2 SINE B2 73 189 -6 4 1606 975 219 14 37 chr6 133880532 133880746 -15636291 + B3 SINE B2 5 213 -3 4 1606 1096 212 12 59 chr6 133880884 133881140 -15635897 + ORR1D1 LTR MaLR 4 247 -127 4 1606 286 188 0 0 chr6 133881190 133881238 -15635799 - URR1B DNA MER1_type -1 224 177 4 1606 387 0 0 0 chr6 133881297 133881340 -15635697 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1606 1329 21 0 0 chr6 133881340 133881484 -15635553 - B1_Mm SINE Alu -3 144 1 4 1606 2529 14 10 20 chr6 133881648 133881943 -15635094 - L1Md_F3 LINE L1 -15 6569 6278 4 1606 1052 189 15 20 chr6 133882460 133882660 -15634377 - URR1B DNA MER1_type -26 199 1 4 1606 988 262 139 47 chr6 133882660 133883133 -15633904 - MT2A LTR ERVL -16 517 1 4 1606 247 196 20 0 chr6 133883140 133883191 -15633846 + ORR1D1 LTR MaLR 327 378 0 4 1606 28 0 0 0 chr6 133883856 133883884 -15633153 + AT_rich Low_complexity Low_complexity 1 28 0 4 1606 3547 218 70 38 chr6 133884228 133885735 -15631302 + RMER1B Other Other 75 1063 -3 4 1606 238 274 92 28 chr6 133886379 133886488 -15630549 - PB1D10 SINE Alu 0 117 2 4 1606 4471 109 19 72 chr6 133887436 133888226 -15628811 + RMER17A LTR ERVK 1 748 -3 4 1606 378 0 0 0 chr6 133888477 133888519 -15628518 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1606 446 334 7 48 chr6 133889144 133889366 -15627671 + B3A SINE B2 6 215 -1 4 1606 441 0 0 0 chr6 133889369 133889418 -15627619 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1606 342 123 0 0 chr6 133889418 133889475 -15627562 + ORR1A3-int LTR MaLR 1396 1452 -511 4 1606 249 108 0 0 chr6 133889500 133889537 -15627500 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1606 2095 132 0 35 chr6 133889551 133889889 -15627148 + ORR1A3 LTR MaLR 1 326 0 4 1606 10010 144 73 54 chr6 133889889 133891631 -15625406 + ORR1A3-int LTR MaLR 1 1777 -186 4 1606 363 105 0 0 chr6 133891631 133891688 -15625349 + (TTA)n Simple_repeat Simple_repeat 2 58 0 4 1606 10010 144 73 54 chr6 133891688 133891871 -15625166 + ORR1A3-int LTR MaLR 1778 1962 -1 4 1606 1757 138 6 82 chr6 133891872 133891972 -15625065 + ORR1A3 LTR MaLR 1 74 -253 4 1606 2509 115 3 24 chr6 133891972 133892345 -15624692 + RLTR8 LTR ERVK 1 365 0 4 1606 1757 138 6 82 chr6 133892345 133892598 -15624439 + ORR1A3 LTR MaLR 75 327 0 4 1606 37375 64 7 5 chr6 133892978 133899137 -15617900 - L1Md_F3 LINE L1 -2 6582 413 4 1606 1533 42 5 0 chr6 133899247 133899438 -15617599 - L1_Mus2 LINE L1 0 6566 6375 4 1606 4097 196 119 26 chr6 133899479 133899861 -15617176 + L1_Mur3 LINE L1 309 741 -6987 4 1606 420 37 0 0 chr6 133899861 133899915 -15617122 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1606 10951 162 69 31 chr6 133899915 133902613 -15614424 + L1_Mur3 LINE L1 742 3539 -2341 4 1606 615 158 0 0 chr6 133902606 133902707 -15614330 + L1_Mur3 LINE L1 4020 4120 -1760 4 1606 1005 97 7 0 chr6 133902707 133902852 -15614185 + B1_Mus1 SINE Alu 2 147 -1 4 1606 2134 151 48 3 chr6 133902863 133902950 -15614087 + L1_Mur3 LINE L1 4104 4203 -1677 4 1606 243 0 0 0 chr6 133902950 133902977 -15614060 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 4 1606 2134 151 48 3 chr6 133902977 133903268 -15613769 + L1_Mur3 LINE L1 4204 4498 -1382 4 1606 1629 164 15 110 chr6 133903280 133903403 -15613634 - ORR1B1 LTR MaLR 0 394 279 4 1606 5376 131 13 64 chr6 133903403 133904354 -15612683 - RLTR13D6 LTR ERVK 0 902 1 4 1606 1629 164 15 110 chr6 133904354 133904620 -15612417 - ORR1B1 LTR MaLR -116 278 42 4 1606 1379 142 54 0 chr6 133904628 133904749 -15612288 + L1_Mur3 LINE L1 4502 4622 -1258 4 1606 375 60 0 0 chr6 133904749 133904799 -15612238 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1606 1379 142 54 0 chr6 133904799 133904916 -15612121 + L1_Mur3 LINE L1 4623 4752 -1128 4 1606 3147 79 24 16 chr6 133904975 133905426 -15611611 - Lx3_Mus LINE L1 0 7009 6555 4 1606 1470 214 60 70 chr6 133905488 133906026 -15611011 - BGLII_B LTR ERVK -5 436 19 5 1606 2349 170 68 45 chr6 133906034 133906551 -15610486 + L1_Mur3 LINE L1 4746 5274 -606 4 1606 2460 226 23 69 chr6 133906925 133907853 -15609184 + RMER1B Other Other 50 807 -259 5 1606 349 202 97 42 chr6 133907854 133907967 -15609070 - B3A SINE B2 -102 114 1 5 1606 1205 41 7 0 chr6 133908431 133908576 -15608461 + B1_Mus1 SINE Alu 1 146 -2 5 1606 234 0 0 0 chr6 133908586 133908612 -15608425 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1606 694 271 15 30 chr6 133908746 133908795 -15608242 - B3A SINE B2 -2 196 152 5 1606 766 56 19 0 chr6 133908795 133908903 -15608134 + (TATG)n Simple_repeat Simple_repeat 1 110 0 5 1606 694 271 15 30 chr6 133908903 133909051 -15607986 - B3A SINE B2 -47 151 2 5 1606 576 93 0 0 chr6 133909054 133909151 -15607886 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 5 1606 1055 62 6 28 chr6 133909173 133909354 -15607683 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 5 1606 270 0 0 0 chr6 133909354 133909384 -15607653 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1606 268 74 0 69 chr6 133909391 133909449 -15607588 + (CATA)n Simple_repeat Simple_repeat 2 55 0 5 1606 382 299 110 28 chr6 133909510 133909692 -15607345 + B3A SINE B2 2 198 0 5 1606 392 253 0 0 chr6 133909720 133909807 -15607230 - PB1D10 SINE Alu 0 117 31 5 1606 308 215 15 15 chr6 133910589 133910655 -15606382 + L1MA6 LINE L1 6226 6291 -9 5 1606 805 162 21 0 chr6 133911262 133911404 -15605633 - B1_Mur2 SINE Alu 0 149 5 5 1606 325 319 0 8 chr6 133911453 133911570 -15605467 - L1MA4 LINE L1 -379 5921 5806 5 1606 180 0 0 0 chr6 133911570 133911590 -15605447 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1606 598 266 118 24 chr6 133911685 133912000 -15605037 - L1_Mur3 LINE L1 -47 5833 5499 5 1606 389 242 76 33 chr6 133912008 133912187 -15604850 + L1_Mur3 LINE L1 3628 3816 -2330 5 1606 358 236 30 61 chr6 133912215 133912346 -15604691 - L1_Mur3 LINE L1 -366 5514 5388 5 1606 281 307 27 0 chr6 133912362 133912437 -15604600 - ID4 SINE ID -5 78 2 5 1606 223 182 62 0 chr6 133912467 133912525 -15604512 - PB1 SINE Alu -2 125 54 5 1606 308 302 20 20 chr6 133913269 133913367 -15603670 + L2c LINE L2 3282 3379 -8 5 1606 574 236 78 83 chr6 133913735 133913952 -15603085 - B3 SINE B2 0 216 1 5 1606 564 321 12 6 chr6 133913987 133914147 -15602890 + RSINE1 SINE B4 4 164 -1 5 1606 645 25 0 0 chr6 133914209 133914288 -15602749 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1606 823 186 25 13 chr6 133914307 133914465 -15602572 - B3A SINE B2 -36 162 3 5 1606 1060 225 53 4 chr6 133914693 133914938 -15602099 + MTEa LTR MaLR 111 367 -12 5 1606 611 244 0 30 chr6 133915036 133915171 -15601866 + RSINE1 SINE B4 4 134 -31 5 1606 2919 139 97 11 chr6 133915598 133916306 -15600731 - L1_Mur2 LINE L1 -809 5071 4165 5 1606 4759 163 85 24 chr6 133916303 133917221 -15599816 + Lx4B LINE L1 6085 7058 0 5 1606 208 143 0 0 chr6 133917331 133917366 -15599671 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1606 233 240 13 0 chr6 133917838 133917913 -15599124 + CT-rich Low_complexity Low_complexity 4 79 0 5 1606 329 221 0 42 chr6 133919290 133919361 -15597676 + PB1D10 SINE Alu 2 69 -48 5 1606 286 305 0 89 chr6 133919361 133919380 -15597657 + B4A SINE B4 87 168 -124 5 1606 295 298 84 90 chr6 133919862 133920017 -15597020 + B4A SINE B4 3 156 -136 5 1606 219 315 0 0 chr6 133920027 133920081 -15596956 + ID4 SINE ID 19 72 -11 5 1606 402 74 0 0 chr6 133920092 133920146 -15596891 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1606 870 142 4 26 chr6 133920626 133920900 -15596137 + (CA)n Simple_repeat Simple_repeat 1 267 0 5 1606 522 0 0 0 chr6 133921060 133921118 -15595919 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 5 1606 724 33 0 0 chr6 133921119 133921210 -15595827 - B1_Mus2 SINE Alu -11 136 46 5 1606 296 185 157 24 chr6 133921151 133921234 -15595803 - RLTR25B LTR ERVK -519 509 416 5 1606 3705 209 114 64 chr6 133921800 133923062 -15593975 + RMER1A Other Other 1 1064 -2 5 1606 418 186 20 14 chr6 133923879 133924026 -15593011 + (TG)n Simple_repeat Simple_repeat 1 148 0 5 1606 233 219 31 0 chr6 133924041 133924105 -15592932 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1606 230 167 25 37 chr6 133924110 133924191 -15592846 + (TATG)n Simple_repeat Simple_repeat 2 81 0 5 1606 288 206 22 22 chr6 133924218 133924357 -15592680 + (TG)n Simple_repeat Simple_repeat 1 139 0 5 1606 237 224 17 0 chr6 133924374 133924432 -15592605 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1606 789 199 25 0 chr6 133924434 133924452 -15592585 - B4A SINE B4 -1 291 274 5 1606 204 40 0 0 chr6 133924452 133924477 -15592560 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1606 789 199 25 0 chr6 133924477 133924619 -15592418 - B4A SINE B4 -19 273 128 5 1606 374 0 0 162 chr6 133924622 133924820 -15592217 + (CTCTG)n Simple_repeat Simple_repeat 5 170 0 5 1606 251 38 56 19 chr6 133924841 133924895 -15592142 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 5 1606 582 226 68 7 chr6 133925171 133925318 -15591719 + B3 SINE B2 55 210 -6 5 1606 24 0 0 29 chr6 133925319 133925335 -15591702 + AT_rich Low_complexity Low_complexity 1 16 0 5 1606 6908 88 9 8 chr6 133925335 133926299 -15590738 - Lx3_Mus LINE L1 0 7009 6045 5 1606 24 0 0 29 chr6 133926299 133926317 -15590720 + AT_rich Low_complexity Low_complexity 1 18 0 5 1606 1169 56 7 0 chr6 133926317 133926459 -15590578 - B1_Mus1 SINE Alu -5 143 1 5 1606 526 210 39 24 chr6 133927700 133927827 -15589210 - ID_B1 SINE B4 -17 207 79 5 1606 233 229 32 32 chr6 133927991 133928054 -15588983 + tRNA-Ala-GCY_ tRNA tRNA 5 67 -8 5 1606 477 156 0 0 chr6 133928064 133928160 -15588877 + (CA)n Simple_repeat Simple_repeat 1 96 0 5 1606 501 309 110 30 chr6 133928194 133928394 -15588643 + B3 SINE B2 1 216 0 5 1606 388 287 9 0 chr6 133928431 133928539 -15588498 + PB1D10 SINE Alu 3 111 -6 5 1606 1534 62 0 20 chr6 133928610 133928808 -15588229 + B2_Mm2 SINE B2 1 194 -1 5 1606 684 246 21 0 chr6 133928820 133928962 -15588075 + RSINE1 SINE B4 4 148 -17 5 1606 572 27 14 0 chr6 133928988 133929062 -15587975 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 5 1606 615 160 252 0 chr6 133929275 133929426 -15587611 - B3 SINE B2 -1 215 27 5 1606 619 154 10 0 chr6 133929419 133929523 -15587514 - B1_Mur4 SINE Alu -3 147 43 5 1606 243 0 318 0 chr6 133929528 133929660 -15587377 + (CCTG)n Simple_repeat Simple_repeat 2 175 0 5 1606 395 0 0 163 chr6 133929580 133929795 -15587242 + (CTCTG)n Simple_repeat Simple_repeat 1 180 0 5 1606 282 179 0 35 chr6 133929797 133929855 -15587182 - B1_Mur4 SINE Alu -90 60 5 5 1606 2742 284 58 29 chr6 133929885 133930572 -15586465 - Lx9 LINE L1 -151 7493 6777 5 1606 1985 167 113 0 chr6 133930572 133930926 -15586111 + ORR1B1 LTR MaLR 1 394 0 5 1606 2742 269 61 26 chr6 133930926 133931188 -15585849 - Lx9 LINE L1 -721 6923 6644 5 1606 426 318 62 15 chr6 133931703 133931898 -15585139 + B3A SINE B2 1 204 -12 5 1606 21 36 0 0 chr6 133931966 133931994 -15585043 + AT_rich Low_complexity Low_complexity 1 28 0 5 1606 183 42 0 0 chr6 133932131 133932155 -15584882 + (TATAA)n Simple_repeat Simple_repeat 4 27 0 5 1606 1136 191 44 0 chr6 133932466 133932670 -15584367 + B3 SINE B2 4 216 0 5 1606 363 280 51 36 chr6 133934146 133934283 -15582754 + B4A SINE B4 1 139 -153 5 1606 372 175 0 0 chr6 133934293 133934390 -15582647 + (CA)n Simple_repeat Simple_repeat 1 97 0 5 1606 436 276 0 0 chr6 133934521 133934626 -15582411 - PB1D10 SINE Alu -7 110 6 5 1606 250 342 33 66 chr6 133934737 133934950 -15582087 + MER102a DNA MER1_type 115 320 -10 5 1606 355 302 142 42 chr6 133935516 133935706 -15581331 + B4A SINE B4 3 211 -81 5 1606 234 91 0 0 chr6 133935826 133935859 -15581178 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1606 797 226 10 10 chr6 133935928 133936120 -15580917 + B3A SINE B2 7 198 0 5 1606 189 0 0 0 chr6 133936300 133936321 -15580716 + (CCA)n Simple_repeat Simple_repeat 1 21 0 5 1606 279 278 81 22 chr6 133936346 133936482 -15580555 + ORR1E LTR MaLR 54 197 -162 5 1606 489 17 0 0 chr6 133936519 133936577 -15580460 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1606 372 317 24 0 chr6 133936584 133936707 -15580330 - RSINE1 SINE B4 -36 129 4 5 1606 488 213 0 8 chr6 133936717 133936840 -15580197 + CT-rich Low_complexity Low_complexity 2 123 0 5 1606 530 242 82 62 chr6 133936851 133937045 -15579992 - B3A SINE B2 0 198 1 5 1606 219 200 0 20 chr6 133937833 133937884 -15579153 + (TAA)n Simple_repeat Simple_repeat 1 50 0 5 1606 473 303 94 81 chr6 133937886 133938010 -15579027 + MER31-int LTR ERV1 377 509 -7698 5 1606 216 0 0 0 chr6 133938010 133938034 -15579003 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1606 473 303 94 81 chr6 133938034 133938354 -15578683 + MER31-int LTR ERV1 510 827 -7380 5 1606 23 33 0 0 chr6 133938419 133938449 -15578588 + AT_rich Low_complexity Low_complexity 1 30 0 5 1606 373 359 125 43 chr6 133938449 133938541 -15578496 - Lx8 LINE L1 -6 7467 7368 5 1606 768 77 0 0 chr6 133938541 133938645 -15578392 + (TC)n Simple_repeat Simple_repeat 1 104 0 5 1606 373 359 125 43 chr6 133938645 133939186 -15577851 - Lx8 LINE L1 -106 7367 6782 5 1606 505 218 19 8 chr6 133939231 133939364 -15577673 + B1_Mus2 SINE Alu 5 137 -13 5 1606 203 0 0 36 chr6 133939364 133939392 -15577645 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1606 572 234 0 47 chr6 133939693 133939841 -15577196 - ID_B1 SINE B4 -1 223 83 5 1606 595 247 105 21 chr6 133940127 133940317 -15576720 + B3 SINE B2 1 206 -10 5 1606 274 233 96 0 chr6 133940357 133940430 -15576607 + MER31-int LTR ERV1 909 988 -3948 5 1606 308 258 119 41 chr6 133940442 133940685 -15576352 + MER31-int LTR ERV1 1033 1294 -3642 5 1606 180 70 45 23 chr6 133940744 133940788 -15576249 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 5 1606 992 71 14 0 chr6 133940788 133940929 -15576108 - B1_Mus1 SINE Alu 0 148 6 5 1606 240 240 33 8 chr6 133940826 133940948 -15576089 - ORR1B1-int LTR MaLR -755 754 630 5 1606 602 306 27 0 chr6 133940967 133941153 -15575884 - ID_B1 SINE B4 -26 198 8 5 1606 448 276 0 0 chr6 133941152 133941250 -15575787 - PB1D7 SINE Alu -16 104 7 5 1606 728 129 8 0 chr6 133941267 133941391 -15575646 + (TC)n Simple_repeat Simple_repeat 1 125 0 5 1606 638 294 76 92 chr6 133941403 133941543 -15575494 + MER31-int LTR ERV1 2813 2957 -1979 5 1606 256 263 111 40 chr6 133941543 133941642 -15575395 + PB1D10 SINE Alu 2 107 -10 6 1606 638 300 65 87 chr6 133941642 133942096 -15574941 + MER31-int LTR ERV1 2958 3681 -1675 5 1606 962 312 11 34 chr6 133942146 133942501 -15574536 + MTEa LTR MaLR 27 373 -6 6 1606 270 81 0 0 chr6 133942657 133942694 -15574343 + (CCA)n Simple_repeat Simple_repeat 3 39 0 6 1606 370 296 50 165 chr6 133942718 133942900 -15574137 + RSINE1 SINE B4 2 162 -3 6 1606 597 64 0 0 chr6 133942943 133943021 -15574016 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 6 1606 396 300 9 0 chr6 133943065 133943175 -15573862 + PB1D7 SINE Alu 10 120 0 6 1606 1925 193 50 18 chr6 133943319 133943720 -15573317 - MTD LTR MaLR -5 414 1 6 1606 304 309 21 42 chr6 133944024 133944166 -15572871 + MER31-int LTR ERV1 4565 4703 -233 5 1606 280 283 127 36 chr6 133944343 133944453 -15572584 - ID_B1 SINE B4 -3 221 102 6 1606 330 263 0 0 chr6 133944542 133944618 -15572419 + MER34A LTR ERV1 3 78 -493 6 1606 289 266 105 11 chr6 133944839 133944934 -15572103 + PB1D10 SINE Alu 1 104 -13 6 1606 252 0 0 0 chr6 133944934 133944962 -15572075 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 6 1606 432 181 0 0 chr6 133945002 133945085 -15571952 + CT-rich Low_complexity Low_complexity 3 85 0 6 1606 1959 188 48 48 chr6 133945195 133945274 -15571763 + MTC LTR MaLR 1 72 -349 6 1606 994 83 140 0 chr6 133945274 133945431 -15571606 + L1_Mus3 LINE L1 6457 6635 -3 6 1606 1959 188 48 48 chr6 133945431 133945770 -15571267 + MTC LTR MaLR 73 419 -2 6 1606 216 316 147 15 chr6 133946040 133946182 -15570855 + MIR3 SINE MIR 2 155 -53 6 1606 322 291 18 9 chr6 133946182 133946293 -15570744 + MER5A DNA MER1_type 4 115 -74 6 1606 551 241 84 35 chr6 133946350 133946492 -15570545 - RSINE1 SINE B4 -15 150 2 6 1606 378 197 0 62 chr6 133947269 133947350 -15569687 + B1F SINE Alu 41 116 -33 6 1606 267 328 26 8 chr6 133948706 133948823 -15568214 + RMER15 LTR ERVL 303 421 -154 6 1606 251 372 44 31 chr6 133949001 133949226 -15567811 + Tigger13a DNA MER2_type 113 340 -431 6 1606 396 0 0 0 chr6 133949347 133949391 -15567646 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1606 639 256 7 0 chr6 133949538 133949675 -15567362 - ID_B1 SINE B4 0 224 87 6 1606 444 278 26 0 chr6 133949812 133949927 -15567110 - PB1D9 SINE Alu 0 120 3 6 1606 1051 76 0 0 chr6 133949917 133950062 -15566975 + B1_Mus2 SINE Alu 3 147 0 6 1606 207 0 0 0 chr6 133950065 133950088 -15566949 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1606 1116 232 86 68 chr6 133950510 133950861 -15566176 - ORR1E LTR MaLR -2 357 1 6 1606 249 225 71 101 chr6 133950918 133951017 -15566020 + B3A SINE B2 100 195 -3 6 1606 669 301 36 104 chr6 133951045 133951353 -15565684 + B4A SINE B4 6 292 0 6 1606 346 282 0 0 chr6 133951687 133951765 -15565272 - PB1D10 SINE Alu -13 104 27 6 1606 493 211 109 16 chr6 133951956 133952139 -15564898 - L1MC4a LINE L1 -239 7643 7444 6 1606 453 232 352 0 chr6 133952147 133952329 -15564708 + B4A SINE B4 4 249 -43 6 1606 348 178 0 0 chr6 133952343 133952416 -15564621 + GA-rich Low_complexity Low_complexity 2 74 0 6 1606 298 317 77 65 chr6 133952505 133952842 -15564195 - L1MC4a LINE L1 -586 7296 6956 6 1606 252 149 0 0 chr6 133953632 133953679 -15563358 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 1606 1120 92 0 0 chr6 133953685 133953827 -15563210 - B1_Mus1 SINE Alu -5 143 2 6 1606 1055 309 146 21 chr6 133953833 133954506 -15562531 - L1MB8 LINE L1 -44 6134 5378 6 1606 7629 220 72 35 chr6 133954550 133954808 -15562229 - Lx6 LINE L1 -6 7454 7191 6 1606 1112 49 20 59 chr6 133954808 133954961 -15562076 + B1_Mus1 SINE Alu 2 148 0 6 200 7629 201 64 45 chr6 133954961 133957273 -15559764 - Lx6 LINE L1 -270 7190 4830 6 1607 1046 135 86 5 chr6 133957338 133957547 -15559490 - Lx6 LINE L1 -2340 3540 3315 6 1607 3073 255 27 121 chr6 133957550 133957764 -15559273 - L1_Mur3 LINE L1 -2747 3139 2931 6 1607 414 0 0 0 chr6 133957764 133957810 -15559227 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 6 1607 630 226 29 0 chr6 133957810 133957947 -15559090 - B1_Mur3 SINE Alu -2 147 7 6 1607 5912 156 24 36 chr6 133957947 133958823 -15558214 - L1_Mur3 LINE L1 -2956 2930 2046 6 1607 414 0 0 0 chr6 133958823 133958869 -15558168 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1607 414 0 0 0 chr6 133958869 133958914 -15558123 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1607 5912 140 23 22 chr6 133958914 133959110 -15557927 - L1_Mur3 LINE L1 -3835 2045 1853 6 1607 824 52 61 0 chr6 133959110 133959225 -15557812 - ORR1A2 LTR MaLR -1 325 204 6 1607 2826 19 3 0 chr6 133959225 133959546 -15557491 - RLTRETN_Mm LTR ERVK 0 322 1 6 1607 41596 29 3 9 chr6 133959546 133964419 -15552618 - MMETn-int LTR ERVK 0 4844 1 6 1607 2826 19 3 0 chr6 133964419 133964740 -15552297 - RLTRETN_Mm LTR ERVK 0 322 1 6 1607 1269 115 0 87 chr6 133964740 133964969 -15552068 - ORR1A2 LTR MaLR -118 209 1 6 1607 2613 148 58 33 chr6 133964969 133965540 -15551497 - L1_Mur3 LINE L1 -4024 1856 1272 6 1607 4032 168 54 74 chr6 133965540 133966455 -15550582 - RMER19B LTR ERVK -5 897 2 6 1607 3328 195 61 26 chr6 133966456 133967181 -15549856 - L1_Mur3 LINE L1 -6461 1267 518 6 1607 222 229 14 14 chr6 133967236 133967307 -15549730 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 6 1607 219 356 33 0 chr6 133967312 133967402 -15549635 - B1_Mur3 SINE Alu -21 128 36 6 1607 450 339 96 12 chr6 133967337 133967504 -15549533 - ID_B1 SINE B4 -43 181 1 6 1607 189 0 0 0 chr6 133967558 133967579 -15549458 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1607 481 265 83 32 chr6 133968737 133968893 -15548144 + RSINE1 SINE B4 2 165 0 6 1607 518 67 0 13 chr6 133969242 133969318 -15547719 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 1607 259 288 25 0 chr6 133970009 133970089 -15546948 + MER58C DNA MER1_type 134 215 0 6 1607 318 288 26 18 chr6 133970195 133970308 -15546729 + L1M5 LINE L1 2856 2969 -3177 6 1607 2064 165 35 14 chr6 133970423 133970792 -15546245 - ORR1C1 LTR MaLR 0 378 2 6 1607 300 362 25 6 chr6 133970826 133970987 -15546050 - LTR33C LTR ERVL -137 492 329 6 1607 182 118 29 0 chr6 133971761 133971795 -15545242 + (CTTG)n Simple_repeat Simple_repeat 4 38 0 6 1607 368 362 0 58 chr6 133971795 133971983 -15545054 - ID_B1 SINE B4 -1 223 47 6 1607 446 281 108 37 chr6 133972222 133972436 -15544601 - ERVL-int LTR ERVL -765 4902 4674 6 1607 389 262 15 48 chr6 133972965 133973086 -15543951 + ID_B1 SINE B4 74 183 -109 6 1607 466 279 83 18 chr6 133973099 133973267 -15543770 - ERVL-int LTR ERVL -2211 3546 3368 6 1607 755 212 7 20 chr6 133973284 133973433 -15543604 - B1_Mus2 SINE Alu 0 147 1 6 1607 898 128 57 0 chr6 133973483 133973624 -15543413 + B1_Mur1 SINE Alu 1 149 0 6 1607 347 268 0 23 chr6 133973729 133973817 -15543220 - ERVL-int LTR ERVL -2742 2972 2887 6 1607 444 338 111 0 chr6 133974042 133974240 -15542797 - ERVL-int LTR ERVL -3424 2243 2024 6 1607 408 20 0 0 chr6 133974591 133974640 -15542397 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1607 417 263 36 14 chr6 133974903 133975042 -15541995 - ERVL-int LTR ERVL -4385 1282 1141 6 1607 685 283 144 7 chr6 133975172 133975464 -15541573 + MLT2B2 LTR ERVL 1 332 -183 6 1607 312 318 63 8 chr6 133975860 133975987 -15541050 + MLT2F LTR ERVL 6 139 -524 6 1607 333 0 0 0 chr6 133976062 133976099 -15540938 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1607 297 296 17 42 chr6 133976140 133976260 -15540777 + MLT2B2 LTR ERVL 380 496 -167 6 1607 468 0 0 0 chr6 133976291 133976343 -15540694 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1607 522 277 0 0 chr6 133976423 133976542 -15540495 + PB1D7 SINE Alu 1 119 -1 6 1607 654 287 7 0 chr6 133977196 133977346 -15539691 + ORR1E LTR MaLR 4 154 -205 6 1607 1485 149 60 3 chr6 133977392 133977675 -15539362 - MTC LTR MaLR -8 413 115 6 1607 1187 61 0 0 chr6 133977684 133977831 -15539206 + B1_Mus2 SINE Alu 1 147 0 6 1607 201 158 0 0 chr6 133977831 133977869 -15539168 + A-rich Low_complexity Low_complexity 1 38 0 6 1607 1038 160 0 176 chr6 133977884 133978157 -15538880 - URR1A DNA MER1_type 0 226 2 6 1607 723 109 9 0 chr6 133978158 133978268 -15538769 - MTC LTR MaLR -310 111 1 6 1607 3216 258 91 56 chr6 133978268 133979490 -15537547 - Lx8 LINE L1 -23 7450 5382 6 1607 544 192 19 0 chr6 133979497 133979601 -15537436 + B3 SINE B2 4 109 -107 6 1607 313 313 78 15 chr6 133979658 133979905 -15537132 + L1MEf LINE L1 1522 1772 -4861 6 1607 321 278 49 150 chr6 133979948 133980065 -15536972 + L1_Rod LINE L1 5627 5732 -115 6 1607 738 238 38 24 chr6 133980065 133980276 -15536761 - B3 SINE B2 0 216 3 6 1607 340 305 42 21 chr6 133980276 133980420 -15536617 + L1MA5 LINE L1 5786 5932 -368 6 1607 755 226 139 5 chr6 133980698 133980885 -15536152 + B3 SINE B2 1 212 -4 6 1607 293 285 136 33 chr6 133980910 133981134 -15535903 + L1MEf LINE L1 1887 2122 -4435 6 1607 1115 95 0 0 chr6 133981419 133981566 -15535471 - B1_Mus1 SINE Alu 0 148 2 6 1607 570 225 42 0 chr6 133981618 133981760 -15535277 - B1_Mur2 SINE Alu 0 149 2 6 1607 540 277 12 48 chr6 133981811 133981978 -15535059 + RSINE1 SINE B4 3 163 -2 6 1607 666 142 8 8 chr6 133981992 133982113 -15534924 + URR1B DNA MER1_type 105 225 0 6 1607 1173 303 78 32 chr6 133982247 133982809 -15534228 + Cheshire DNA MER1_type 1531 2118 -302 6 1607 305 283 34 34 chr6 133982815 133982932 -15534105 + ID_B1 SINE B4 85 201 -23 6 1607 357 274 251 5 chr6 133982932 133983123 -15533914 + Cheshire DNA MER1_type 2148 2385 -35 6 1607 226 252 110 10 chr6 133983423 133983523 -15533514 + Tigger7 DNA MER2_type 2248 2357 -134 6 1607 210 37 0 0 chr6 133983527 133983554 -15533483 + (TATG)n Simple_repeat Simple_repeat 2 28 0 6 1607 285 266 12 12 chr6 133983827 133983907 -15533130 + ID4 SINE ID 4 83 0 6 1607 434 204 73 9 chr6 133984040 133984149 -15532888 + PB1D10 SINE Alu 2 117 0 6 1607 316 210 161 0 chr6 133984528 133984609 -15532428 + B1_Mur2 SINE Alu 53 146 -3 6 1607 243 122 0 0 chr6 133985764 133985813 -15531224 + (CGAG)n Simple_repeat Simple_repeat 2 50 0 6 1607 23 33 0 0 chr6 133985813 133985843 -15531194 + GC_rich Low_complexity Low_complexity 1 30 0 6 1607 429 148 59 64 chr6 133986389 133986576 -15530461 - RMER17C LTR ERVK -134 276 91 6 1607 360 0 0 0 chr6 133986804 133986844 -15530193 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1607 24 0 0 0 chr6 133988300 133988324 -15528713 + AT_rich Low_complexity Low_complexity 1 24 0 6 1607 372 43 0 0 chr6 133988746 133988792 -15528245 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 6 1607 333 68 0 0 chr6 133990057 133990101 -15526936 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1607 1070 74 0 0 chr6 133990114 133990249 -15526788 - B1_Mus1 SINE Alu -12 136 2 6 1607 310 371 62 19 chr6 133991247 133991571 -15525466 - MamRep434 DNA TcMar -29 397 60 6 1607 487 180 72 24 chr6 133992997 133993122 -15523915 - Lx5 LINE L1 -6 7044 6914 6 1607 295 298 8 8 chr6 133993559 133993681 -15523356 + Tigger15a DNA TcMar 533 654 -61 7 1607 375 23 0 0 chr6 133994420 133994464 -15522573 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1607 235 156 0 22 chr6 133995322 133995368 -15521669 - RMER15 LTR ERVL -111 464 420 7 1607 240 0 49 24 chr6 133996080 133996121 -15520916 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 7 1607 448 237 52 0 chr6 133996766 133996863 -15520174 + PB1D9 SINE Alu 5 106 -14 7 1607 879 240 140 26 chr6 133997404 133997712 -15519325 - MTEb LTR MaLR -36 343 1 7 1607 592 192 25 8 chr6 133997742 133997863 -15519174 + B1_Mur1 SINE Alu 6 128 -21 7 1607 28 0 0 0 chr6 133998381 133998409 -15518628 + AT_rich Low_complexity Low_complexity 1 28 0 7 1607 586 245 25 50 chr6 133998425 133998584 -15518453 - RSINE1 SINE B4 -10 155 1 7 1607 1457 201 104 8 chr6 133998766 133999132 -15517905 + MTD LTR MaLR 5 405 -14 7 1607 375 23 0 0 chr6 134000011 134000055 -15516982 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1607 208 79 0 50 chr6 134000864 134000904 -15516133 + (TCTTG)n Simple_repeat Simple_repeat 2 39 0 2 1607 499 243 7 75 chr6 134000937 134001084 -15515953 - ID_B1 SINE B4 -5 219 83 3 1607 2008 189 52 22 chr6 134001283 134001684 -15515353 - MTC LTR MaLR -8 413 1 4 1607 854 104 8 8 chr6 134001718 134001844 -15515193 - B1_Mm SINE Alu -21 126 1 5 1607 24 0 0 0 chr6 134001847 134001871 -15515166 + AT_rich Low_complexity Low_complexity 1 24 0 6 1607 327 286 13 0 chr6 134001916 134001993 -15515044 - ID_B1 SINE B4 -38 186 109 7 1607 799 288 45 0 chr6 134002448 134002646 -15514391 - ID_B1 SINE B4 -12 212 6 8 1607 21 0 0 0 chr6 134003595 134003616 -15513421 + AT_rich Low_complexity Low_complexity 1 21 0 9 1607 276 30 0 0 chr6 134004381 134004414 -15512623 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1607 468 157 35 18 chr6 134004887 134005056 -15511981 + (CA)n Simple_repeat Simple_repeat 2 173 0 1 1607 387 56 0 0 chr6 134005138 134005192 -15511845 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1607 21 0 0 0 chr6 134006157 134006178 -15510859 + AT_rich Low_complexity Low_complexity 1 21 0 1 1607 585 259 83 97 chr6 134006333 134006584 -15510453 - ID_B1 SINE B4 -44 248 2 1 1607 214 174 0 0 chr6 134007139 134007185 -15509852 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1607 633 229 0 48 chr6 134007185 134007332 -15509705 - B1_Mur2 SINE Alu -7 142 3 1 1607 360 312 43 0 chr6 134007692 134007830 -15509207 + B1_Mur2 SINE Alu 1 144 -5 1 1607 258 107 17 35 chr6 134008248 134008306 -15508731 + CT-rich Low_complexity Low_complexity 1 57 0 1 1607 365 229 102 50 chr6 134008316 134008420 -15508617 - PB1D7 SINE Alu -31 116 17 1 1607 1190 259 45 93 chr6 134009969 134010365 -15506672 + MTE2a LTR MaLR 2 378 -1 2 1607 414 0 0 0 chr6 134011915 134011961 -15505076 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1607 966 263 51 11 chr6 134011978 134012251 -15504786 - B4A SINE B4 -8 284 1 2 1607 219 377 36 51 chr6 134013009 134013060 -15503977 - ID_B1 SINE B4 -89 135 1 2 1607 273 366 0 47 chr6 134013060 134013146 -15503891 - ID4 SINE ID -1 82 1 2 1607 409 277 10 0 chr6 134013165 134013266 -15503771 - B1F SINE Alu -5 144 43 2 1607 488 252 0 0 chr6 134013285 134013388 -15503649 - PB1D10 SINE Alu -13 104 2 2 1607 414 0 0 0 chr6 134013548 134013594 -15503443 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1607 459 259 70 21 chr6 134013654 134013796 -15503241 + RSINE1 SINE B4 2 150 -15 2 1607 312 27 0 0 chr6 134013803 134013840 -15503197 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1607 212 294 0 0 chr6 134014397 134014465 -15502572 + (CATA)n Simple_repeat Simple_repeat 2 69 0 3 1607 1650 31 5 0 chr6 134014519 134014710 -15502327 - B2_Mm1t SINE B2 0 193 2 3 1607 600 290 168 47 chr6 134014879 134015201 -15501836 - MTEb LTR MaLR -18 361 1 3 1607 536 335 82 52 chr6 134016000 134016438 -15500599 - MLT2B2 LTR ERVL 0 515 65 3 1607 347 41 20 0 chr6 134016537 134016586 -15500451 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1607 1181 225 159 75 chr6 134017132 134017516 -15499521 + MTD LTR MaLR 3 418 -1 3 1607 303 274 48 103 chr6 134017964 134017991 -15499046 - PB1D9 SINE Alu 0 120 100 3 1607 763 249 62 0 chr6 134017991 134018184 -15498853 - ID_B1 SINE B4 -18 206 2 3 1607 342 274 48 103 chr6 134018184 134018282 -15498755 - B1F SINE Alu -21 99 2 3 1607 243 0 0 0 chr6 134018332 134018359 -15498678 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1607 841 73 0 54 chr6 134018359 134018489 -15498548 - B1_Mus1 SINE Alu -24 124 2 3 1607 306 221 38 25 chr6 134018983 134019062 -15497975 + ID4 SINE ID 2 81 -2 4 1607 1241 92 17 17 chr6 134019398 134019575 -15497462 - B2_Mm2 SINE B2 -18 177 1 4 1607 1106 75 0 20 chr6 134020711 134020861 -15496176 - B1_Mus2 SINE Alu 0 147 1 4 1607 324 0 0 0 chr6 134020988 134021024 -15496013 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 4 1607 263 214 13 40 chr6 134021147 134021298 -15495739 + CT-rich Low_complexity Low_complexity 3 149 0 4 1607 551 335 65 44 chr6 134021702 134021996 -15495041 - L1MC5 LINE L1 -49 7912 7613 4 1607 23 0 0 0 chr6 134022394 134022417 -15494620 + AT_rich Low_complexity Low_complexity 1 23 0 4 1607 225 0 0 0 chr6 134022417 134022442 -15494595 + (TAA)n Simple_repeat Simple_repeat 2 26 0 4 1607 494 266 71 0 chr6 134023541 134023654 -15493383 - RSINE1 SINE B4 -33 132 12 4 1607 450 289 69 15 chr6 134023687 134023817 -15493220 - B1F1 SINE Alu -3 146 10 4 1607 350 304 60 127 chr6 134025609 134025892 -15491145 - B4A SINE B4 -2 290 27 5 1607 357 280 11 0 chr6 134025951 134026044 -15490993 - PB1D10 SINE Alu -7 110 17 5 1607 318 26 0 0 chr6 134026814 134026853 -15490184 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1607 591 295 139 11 chr6 134026978 134027252 -15489785 - MLT1A0 LTR MaLR -2 363 55 5 1607 843 247 5 41 chr6 134028331 134028350 -15488687 - B3A SINE B2 -2 196 179 5 1607 261 0 0 0 chr6 134028350 134028379 -15488658 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1607 843 247 5 41 chr6 134028379 134028553 -15488484 - B3A SINE B2 -20 178 10 5 1607 255 286 28 75 chr6 134029777 134029883 -15487154 + MIRb SINE MIR 128 228 -40 5 1607 950 156 0 6 chr6 134029905 134030079 -15486958 + CT-rich Low_complexity Low_complexity 2 174 0 5 1607 294 29 0 0 chr6 134030729 134030764 -15486273 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1607 469 248 0 47 chr6 134031768 134031874 -15485163 - ID_B1 SINE B4 -20 204 104 5 1607 857 60 9 0 chr6 134032039 134032155 -15484882 + (TCCCC)n Simple_repeat Simple_repeat 5 121 0 6 1607 1218 61 0 0 chr6 134032159 134032306 -15484731 - B1_Mm SINE Alu 0 147 1 6 1607 345 62 0 0 chr6 134033060 134033108 -15483929 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1607 625 303 60 32 chr6 134033147 134033396 -15483641 - MLT1E LTR MaLR -1 652 397 6 1607 282 29 0 0 chr6 134033412 134033447 -15483590 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 1607 254 73 24 0 chr6 134033447 134033488 -15483549 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1607 601 273 108 30 chr6 134033491 134033759 -15483278 - B4 SINE B4 0 292 4 6 1607 307 242 85 32 chr6 134034018 134034112 -15482925 + PB1D10 SINE Alu 19 117 0 6 1607 502 274 8 48 chr6 134034442 134034595 -15482442 + B1F1 SINE Alu 2 149 0 6 1607 23 0 0 0 chr6 134034693 134034716 -15482321 + AT_rich Low_complexity Low_complexity 1 23 0 6 1607 29 28 0 0 chr6 134034826 134034862 -15482175 + AT_rich Low_complexity Low_complexity 1 36 0 7 1607 1042 225 104 14 chr6 134035624 134035912 -15481125 - L1MB3 LINE L1 -6 6177 5864 7 1607 770 277 6 0 chr6 134035980 134036146 -15480891 - B3 SINE B2 -49 167 1 7 1607 458 287 60 9 chr6 134037305 134037421 -15479616 + ID_B1 SINE B4 80 201 -23 7 1607 285 208 89 25 chr6 134037391 134037470 -15479567 + B1_Mur4 SINE Alu 66 149 -1 7 1607 588 308 0 0 chr6 134038068 134038227 -15478810 + RSINE1 SINE B4 3 161 -4 7 1607 720 74 0 0 chr6 134039297 134039405 -15477632 + (TG)n Simple_repeat Simple_repeat 1 108 0 7 1607 216 0 0 0 chr6 134040646 134040670 -15476367 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1607 451 0 0 33 chr6 134040670 134040731 -15476306 + (TTG)n Simple_repeat Simple_repeat 1 59 0 7 1607 207 0 0 0 chr6 134040731 134040754 -15476283 + (TGG)n Simple_repeat Simple_repeat 3 25 0 7 1607 820 260 91 28 chr6 134040823 134041076 -15475961 - B4A SINE B4 -23 269 1 8 1607 509 198 96 35 chr6 134041818 134041933 -15475104 + PB1 SINE Alu 3 124 -3 8 1607 235 273 171 60 chr6 134041953 134042152 -15474885 + ID_B1 SINE B4 2 222 -2 8 1607 397 290 40 8 chr6 134042281 134042406 -15474631 + B1F SINE Alu 13 141 -8 8 1607 249 314 14 0 chr6 134042426 134042496 -15474541 + ID4_ SINE ID 4 74 -9 8 1607 201 74 0 0 chr6 134043146 134043173 -15473864 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1607 220 229 23 35 chr6 134043178 134043264 -15473773 + (TCTG)n Simple_repeat Simple_repeat 4 88 0 8 1607 248 281 47 94 chr6 134043269 134043375 -15473662 - RSINE1 SINE B4 0 165 65 8 1607 302 0 0 26 chr6 134043450 134043489 -15473548 + (TTTTTG)n Simple_repeat Simple_repeat 1 38 0 8 1607 397 212 274 0 chr6 134043569 134043682 -15473355 - B1_Mur2 SINE Alu -1 148 5 8 1607 279 0 0 0 chr6 134044337 134044368 -15472669 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1607 459 0 0 0 chr6 134045003 134045054 -15471983 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1607 387 0 0 0 chr6 134045055 134045098 -15471939 + (GA)n Simple_repeat Simple_repeat 1 43 0 9 1607 210 163 0 23 chr6 134045191 134045235 -15471802 + (CATA)n Simple_repeat Simple_repeat 2 44 0 9 1607 825 246 69 0 chr6 134045235 134045438 -15471599 - B4 SINE B4 -73 219 3 9 1607 525 283 95 28 chr6 134045645 134045856 -15471181 + MLT2D LTR ERVL 153 377 -37 9 1607 204 316 108 57 chr6 134046363 134046521 -15470516 - MIR SINE MIR -13 249 84 9 1607 22 0 0 0 chr6 134046588 134046610 -15470427 + AT_rich Low_complexity Low_complexity 1 22 0 9 1607 687 285 5 20 chr6 134046612 134046809 -15470228 - B3A SINE B2 -4 194 1 9 1607 5013 74 3 1 chr6 134047052 134047785 -15469252 - L1_Mus1 LINE L1 -341 6226 5491 9 1607 277 140 0 28 chr6 134048341 134048409 -15468628 - MLT2D LTR ERVL -3 559 496 1 1607 423 149 0 0 chr6 134048415 134048489 -15468548 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1607 709 255 0 13 chr6 134048568 134048719 -15468318 - MLT2D LTR ERVL -127 287 139 1 1607 232 311 0 47 chr6 134048746 134048810 -15468227 + tRNA-Ala-GCY_ tRNA tRNA 8 68 -7 1 1607 292 303 72 24 chr6 134048820 134048945 -15468092 - MLT2D LTR ERVL -280 134 4 1 1607 387 155 47 23 chr6 134049405 134049491 -15467546 - PB1D7 SINE Alu 0 120 33 1 1607 214 323 173 24 chr6 134049592 134049719 -15467318 + L2a LINE L2 2993 3138 -288 1 1607 297 0 0 0 chr6 134050100 134050133 -15466904 + (CAG)n Simple_repeat Simple_repeat 1 33 0 1 1607 542 280 146 82 chr6 134051411 134051726 -15465311 - MER44A DNA MER2_type -4 335 1 1 1607 278 324 91 51 chr6 134051741 134051945 -15465092 - MIRc SINE MIR -52 216 5 1 1607 21 36 0 0 chr6 134052200 134052228 -15464809 + AT_rich Low_complexity Low_complexity 1 28 0 1 1607 322 145 26 13 chr6 134052297 134052374 -15464663 + (TATG)n Simple_repeat Simple_repeat 3 80 0 1 1607 513 335 12 37 chr6 134052374 134052535 -15464502 - RSINE1 SINE B4 0 165 9 1 1607 636 261 168 26 chr6 134054025 134054257 -15462780 + B4A SINE B4 8 272 -20 1 1607 190 275 129 65 chr6 134056388 134056527 -15460510 + MIRm SINE MIR 9 159 -117 1 1607 226 273 13 13 chr6 134057981 134058059 -15458978 + CT-rich Low_complexity Low_complexity 1 78 0 1 1607 372 304 0 35 chr6 134058445 134058561 -15458476 - B1F2 SINE Alu -37 112 1 1 1607 488 265 57 44 chr6 134059427 134059585 -15457452 - RSINE1 SINE B4 -3 162 3 1 1607 425 183 10 0 chr6 134061049 134061153 -15455884 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1607 929 286 27 44 chr6 134061158 134061451 -15455586 - B4A SINE B4 -2 290 3 1 1607 489 17 0 0 chr6 134062046 134062104 -15454933 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1607 198 0 0 0 chr6 134062265 134062287 -15454750 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1607 602 275 101 54 chr6 134062339 134062401 -15454636 - B4 SINE B4 -18 274 215 1 1607 243 0 0 0 chr6 134062401 134062428 -15454609 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 1 1607 602 275 101 54 chr6 134062428 134062623 -15454414 - B4 SINE B4 -78 214 5 1 1607 548 198 165 0 chr6 134062677 134062798 -15454239 - B1_Mur2 SINE Alu -8 141 1 1 1607 330 242 0 15 chr6 134064201 134064268 -15452769 + ID4_ SINE ID 1 66 -17 1 1607 245 231 15 30 chr6 134064771 134064838 -15452199 + MER81 DNA AcHobo 32 97 -17 1 1607 547 220 35 14 chr6 134065281 134065424 -15451613 + B1F1 SINE Alu 3 148 -1 1 1607 718 169 177 50 chr6 134065992 134066080 -15450957 - B3 SINE B2 -9 207 96 1 1607 462 18 0 0 chr6 134066080 134066135 -15450902 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1607 718 169 177 50 chr6 134066135 134066227 -15450810 - B3 SINE B2 -121 95 4 1 1607 248 208 123 111 chr6 134066368 134066449 -15450588 - RMER4A LTR ERVK -27 439 358 1 1607 432 0 0 0 chr6 134066724 134066772 -15450265 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1607 547 257 29 14 chr6 134067966 134068104 -15448933 + ID_B1 SINE B4 84 223 -1 1 1607 618 220 91 70 chr6 134068692 134068878 -15448159 + B4A SINE B4 1 190 -102 1 1607 666 101 0 0 chr6 134068970 134069079 -15447958 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 1607 675 254 221 25 chr6 134069099 134069502 -15447535 - Lx8 LINE L1 -4 7469 6988 1 1607 221 57 29 0 chr6 134069567 134069602 -15447435 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1607 198 0 0 0 chr6 134069602 134069623 -15447414 + (GGGAGA)n Simple_repeat Simple_repeat 3 24 0 1 1607 414 0 0 0 chr6 134069719 134069765 -15447272 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1607 211 279 32 16 chr6 134070062 134070124 -15446913 - L2a LINE L2 -52 3374 3312 1 1607 559 236 48 8 chr6 134071268 134071392 -15445645 + RSINE1 SINE B4 13 141 -24 1 1607 213 39 0 0 chr6 134072362 134072388 -15444649 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 1 1607 452 269 37 0 chr6 134072426 134072534 -15444503 - B1F SINE Alu -32 117 6 1 1607 587 268 32 65 chr6 134072495 134072774 -15444263 + Charlie5 DNA MER1_type 2260 2529 -95 1 1607 21 0 0 0 chr6 134072774 134072795 -15444242 + AT_rich Low_complexity Low_complexity 1 21 0 1 1607 250 265 0 0 chr6 134073964 134074013 -15443024 - ID SINE ID -150 74 26 1 1607 408 363 12 31 chr6 134074074 134074236 -15442801 + B3A SINE B2 3 161 -37 1 1607 267 263 13 0 chr6 134074261 134074337 -15442700 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1607 212 0 36 0 chr6 134074360 134074388 -15442649 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1607 536 288 83 17 chr6 134074517 134074697 -15442340 - RMER15 LTR ERVL -48 527 336 1 1607 1137 176 0 37 chr6 134074968 134075186 -15441851 - URR1B DNA MER1_type -13 212 3 1 1607 332 314 66 42 chr6 134075625 134075791 -15441246 - MER5B DNA MER1_type -2 176 7 1 1607 216 0 0 0 chr6 134076193 134076217 -15440820 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 1 1607 712 172 219 0 chr6 134076342 134076511 -15440526 - URR1A DNA MER1_type -16 210 5 1 1607 1043 106 0 6 chr6 134076638 134076799 -15440238 + (TCC)n Simple_repeat Simple_repeat 3 162 0 1 1607 2070 78 111 3 chr6 134076799 134077098 -15439939 - Lx LINE L1 -9 6645 6314 1 1607 183 100 0 0 chr6 134077410 134077440 -15439597 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1607 219 139 28 0 chr6 134077788 134077824 -15439213 + C-rich Low_complexity Low_complexity 4 40 0 1 1607 447 19 0 0 chr6 134077928 134077980 -15439057 + (GGA)n Simple_repeat Simple_repeat 1 52 0 1 1607 861 222 111 20 chr6 134079581 134079779 -15437258 + B3 SINE B2 1 216 0 1 1607 206 105 26 0 chr6 134079806 134079844 -15437193 + (GGGAGA)n Simple_repeat Simple_repeat 2 40 0 1 1607 211 354 42 57 chr6 134080973 134081165 -15435872 + MIRb SINE MIR 40 228 -40 1 1607 198 0 0 0 chr6 134081172 134081194 -15435843 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1 1607 373 232 29 0 chr6 134081314 134081383 -15435654 - ID4 SINE ID -1 82 12 1 1607 423 0 0 0 chr6 134082412 134082459 -15434578 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1607 1366 267 77 8 chr6 134082567 134082918 -15434119 - MTE2b LTR MaLR -4 375 1 1 1607 209 161 0 0 chr6 134085661 134085692 -15431345 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1607 410 280 50 8 chr6 134085794 134085913 -15431124 - ID_B1 SINE B4 -3 221 98 1 200 985 263 20 11 chr6 134086467 134086698 -15430339 + ID_B1 SINE B4 5 236 -56 1 1608 460 296 29 29 chr6 134087866 134088005 -15429032 - RSINE1 SINE B4 -5 160 22 1 1608 345 203 0 0 chr6 134089316 134089375 -15427662 - HAL1-3A_ME LINE L1 -825 2033 1975 1 1608 207 241 0 18 chr6 134089375 134089430 -15427607 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1608 234 0 0 0 chr6 134089430 134089456 -15427581 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1608 231 36 0 0 chr6 134089461 134089489 -15427548 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1608 1487 230 189 40 chr6 134089490 134089965 -15427072 - MT2B LTR ERVL -55 546 1 1 1608 334 296 58 29 chr6 134089994 134090133 -15426904 + B4A SINE B4 79 221 -71 1 1608 560 221 94 0 chr6 134090011 134090138 -15426899 + B1_Mur4 SINE Alu 11 149 -1 1 1608 326 342 8 49 chr6 134090377 134090500 -15426537 - MIR SINE MIR -139 123 6 1 1608 570 67 0 0 chr6 134090635 134090710 -15426327 + (TGGA)n Simple_repeat Simple_repeat 1 75 0 1 1608 438 307 100 86 chr6 134091965 134092314 -15424723 - ORR1E LTR MaLR -5 354 1 1 1608 201 39 0 0 chr6 134093469 134093495 -15423542 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1608 261 0 0 0 chr6 134094647 134094676 -15422361 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1608 251 295 69 35 chr6 134095172 134095288 -15421749 - Lx8 LINE L1 -2 7471 7352 1 1608 200 255 43 0 chr6 134095783 134095830 -15421207 + L3 LINE CR1 825 873 -3616 1 1608 219 36 0 0 chr6 134096401 134096429 -15420608 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1608 238 267 95 88 chr6 134096463 134096611 -15420426 + YREP_Mm Unknown Unknown 146 294 -1518 1 1608 447 271 29 58 chr6 134096487 134096624 -15420413 - ID_B1 SINE B4 -1 223 91 1 1608 267 31 0 0 chr6 134096652 134096684 -15420353 + (TATG)n Simple_repeat Simple_repeat 1 32 0 1 1608 220 247 111 61 chr6 134097639 134097738 -15419299 + MIR3 SINE MIR 105 208 0 1 1608 425 289 9 17 chr6 134099253 134099369 -15417668 + ID_B1 SINE B4 13 127 -97 1 1608 291 161 0 0 chr6 134099525 134099581 -15417456 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1608 21 36 0 0 chr6 134100025 134100053 -15416984 + AT_rich Low_complexity Low_complexity 1 28 0 1 1608 205 348 33 11 chr6 134100732 134100822 -15416215 - MIRb SINE MIR -66 202 111 1 1608 402 39 0 0 chr6 134101806 134101858 -15415179 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1608 385 250 54 36 chr6 134102875 134102987 -15414050 - B1_Mm SINE Alu 0 147 34 1 1608 203 132 0 36 chr6 134103004 134103059 -15413978 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 1 1608 309 244 12 47 chr6 134103086 134103172 -15413865 - ID4_ SINE ID 0 83 1 1 1608 209 196 0 19 chr6 134103177 134103229 -15413808 + CT-rich Low_complexity Low_complexity 2 52 0 1 1608 220 257 32 0 chr6 134103401 134103474 -15413563 + MIRb SINE MIR 100 174 -94 1 1608 342 0 0 0 chr6 134103935 134103973 -15413064 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1608 467 226 11 0 chr6 134104078 134104171 -15412866 - B3A SINE B2 -102 96 3 1 1608 1092 248 15 15 chr6 134104727 134104993 -15412044 + B4 SINE B4 7 272 -20 2 1608 291 256 59 35 chr6 134105392 134105477 -15411560 - PB1D7 SINE Alu -2 118 32 2 1608 210 295 0 0 chr6 134106933 134106994 -15410043 - B1_Mur2 SINE Alu -19 130 70 2 1608 579 29 0 0 chr6 134107597 134107666 -15409371 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 1608 464 312 77 33 chr6 134109440 134109510 -15407527 + MER2 DNA MER2_type 149 225 -120 2 1608 396 0 0 0 chr6 134109510 134109554 -15407483 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1608 464 312 77 33 chr6 134109554 134109665 -15407372 + MER2 DNA MER2_type 226 338 -7 2 1608 647 276 42 26 chr6 134110151 134110341 -15406696 + B3A SINE B2 5 197 -1 2 1608 653 270 23 14 chr6 134111706 134111924 -15405113 + ID_B1 SINE B4 2 221 -3 2 1608 304 254 262 7 chr6 134112282 134112409 -15404628 - RSINE1 SINE B4 -2 163 4 2 1608 271 264 40 113 chr6 134113318 134113352 -15403685 + RMER12 LTR ERVK 743 777 -545 2 1608 333 0 0 0 chr6 134113352 134113389 -15403648 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2 1608 271 264 40 113 chr6 134113389 134113478 -15403559 + RMER12 LTR ERVK 778 857 -465 2 1608 792 263 53 14 chr6 134113524 134113732 -15403305 + ID_B1 SINE B4 7 222 -2 2 1608 228 302 40 134 chr6 134113713 134113862 -15403175 + RMER12 LTR ERVK 701 835 -487 2 1608 719 245 21 126 chr6 134113776 134114014 -15403023 - B3A SINE B2 -1 215 3 2 1608 502 274 15 30 chr6 134114548 134114680 -15402357 + ID_B1 SINE B4 94 223 -1 2 1608 216 0 0 0 chr6 134116011 134116035 -15401002 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2 1608 261 0 0 0 chr6 134116305 134116334 -15400703 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1608 280 253 222 40 chr6 134116444 134116543 -15400494 - B4 SINE B4 -169 123 7 2 1608 325 158 0 34 chr6 134116937 134116996 -15400041 + ORR1E LTR MaLR 1 57 -313 2 1608 2885 9 3 0 chr6 134116996 134117317 -15399720 - RLTRETN_Mm LTR ERVK 0 322 1 2 1608 5434 15 0 2 chr6 134117317 134117922 -15399115 - MMETn-int LTR ERVK 0 4844 4241 2 1608 1085 229 32 125 chr6 134117941 134118286 -15398751 + ORR1E LTR MaLR 47 359 0 2 1608 196 348 13 72 chr6 134118860 134119012 -15398025 - L3 LINE CR1 -862 3627 3485 2 1608 464 250 77 0 chr6 134119664 134119768 -15397269 - ID_B1 SINE B4 -4 220 109 2 1608 269 210 12 47 chr6 134119806 134119891 -15397146 + CT-rich Low_complexity Low_complexity 4 85 0 2 1608 231 180 177 16 chr6 134119904 134119966 -15397071 - ID4_ SINE ID -11 72 1 2 1608 323 297 77 90 chr6 134120434 134120667 -15396370 - ORR1E LTR MaLR -13 346 117 2 1608 203 327 169 15 chr6 134120703 134121041 -15395996 - L2 LINE L2 -350 3069 2680 2 1608 323 243 0 19 chr6 134121082 134121187 -15395850 + C-rich Low_complexity Low_complexity 1 103 0 2 1608 586 306 41 84 chr6 134121286 134121656 -15395381 - ORR1D2 LTR MaLR -9 370 9 2 1608 186 241 0 33 chr6 134121667 134121727 -15395310 + L2a LINE L2 3229 3286 -140 2 1608 188 323 0 0 chr6 134121737 134121799 -15395238 + MIRm SINE MIR 213 274 -2 2 1608 1103 230 174 14 chr6 134122249 134122610 -15394427 + MTD LTR MaLR 1 419 0 2 1608 337 321 30 88 chr6 134122806 134123069 -15393968 - Charlie19a DNA Charlie -2 384 137 2 1608 608 241 20 7 chr6 134123225 134123371 -15393666 - B1F1 SINE Alu -1 148 1 2 1608 792 144 0 0 chr6 134124094 134124212 -15392825 + B1_Mur2 SINE Alu 21 138 -11 2 1608 217 27 53 26 chr6 134124212 134124250 -15392787 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1608 329 270 18 35 chr6 134124251 134124420 -15392617 + MER33 DNA MER1_type 145 310 -14 2 1608 543 304 36 25 chr6 134124440 134124636 -15392401 + B3A SINE B2 1 198 0 2 1608 360 309 47 8 chr6 134124660 134124787 -15392250 + RSINE1 SINE B4 12 143 -22 2 1608 326 239 30 0 chr6 134125085 134125152 -15391885 + ID4_ SINE ID 3 71 -12 2 1608 322 193 20 102 chr6 134125944 134126042 -15390995 - B3 SINE B2 0 216 127 2 1608 252 328 67 22 chr6 134126139 134126273 -15390764 - HAL1 LINE L1 -724 1783 1644 2 1608 839 204 0 26 chr6 134126655 134126806 -15390231 - B1_Mur3 SINE Alu -2 147 1 2 1608 261 0 0 0 chr6 134126912 134126941 -15390096 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1608 502 305 19 7 chr6 134127000 134127152 -15389885 - B4A SINE B4 0 292 139 2 1608 1541 240 129 3 chr6 134127152 134127524 -15389513 - MTD LTR MaLR 0 419 1 2 1608 504 274 29 29 chr6 134127524 134127663 -15389374 - B4A SINE B4 -151 141 3 2 1608 1391 277 55 29 chr6 134127835 134128322 -15388715 - Lx8 LINE L1 -919 6554 6055 2 1608 355 270 43 35 chr6 134128339 134128454 -15388583 - PB1D10 SINE Alu -1 116 1 2 1608 315 313 19 147 chr6 134128870 134129177 -15387860 - HAL1 LINE L1 -2198 309 42 2 1608 366 254 0 0 chr6 134129947 134130057 -15386980 + (TA)n Simple_repeat Simple_repeat 1 110 0 2 1608 225 0 0 0 chr6 134130087 134130112 -15386925 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1608 396 298 45 22 chr6 134130648 134130782 -15386255 + ID_B1 SINE B4 87 223 -1 2 1608 368 270 58 29 chr6 134130801 134130904 -15386133 + B1F2 SINE Alu 3 108 -41 2 1608 293 294 77 82 chr6 134131063 134131223 -15385814 - MIR SINE MIR -5 257 99 2 1608 492 256 101 11 chr6 134131740 134131996 -15385041 - MTEa LTR MaLR -31 348 19 2 1608 438 20 0 0 chr6 134133498 134133549 -15383488 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1608 255 330 0 60 chr6 134134628 134134744 -15382293 - MIRc SINE MIR -130 138 30 2 1608 342 0 0 0 chr6 134134770 134134808 -15382229 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1608 264 308 0 0 chr6 134135055 134135120 -15381917 - B1_Mur2 SINE Alu -10 139 75 2 1608 262 401 40 0 chr6 134135379 134135531 -15381506 - L2b LINE L2 -21 3354 3197 2 1608 530 140 0 10 chr6 134135805 134135906 -15381131 + (TGG)n Simple_repeat Simple_repeat 1 100 0 2 1608 397 215 125 70 chr6 134138004 134138204 -15378833 - L1MA8 LINE L1 -23 6268 6058 2 1608 372 242 54 21 chr6 134138255 134138348 -15378689 - PB1D10 SINE Alu -1 116 21 2 1608 351 264 97 7 chr6 134138358 134138503 -15378534 - L1MA8 LINE L1 -261 6030 5873 2 1608 613 341 5 27 chr6 134138503 134138687 -15378350 + ID_B1 SINE B4 45 224 0 2 1608 189 0 0 0 chr6 134139061 134139082 -15377955 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1608 315 289 9 19 chr6 134139204 134139310 -15377727 - PB1D7 SINE Alu -2 118 14 2 1608 238 242 78 147 chr6 134141103 134141219 -15375818 + L2c LINE L2 3280 3387 0 2 1608 805 57 0 9 chr6 134141837 134141943 -15375094 - URR1B DNA MER1_type -1 224 120 2 1608 717 309 70 15 chr6 134142054 134142327 -15374710 - B4A SINE B4 -2 290 3 2 1608 344 325 94 65 chr6 134142478 134142889 -15374148 + L2a LINE L2 2806 3245 -181 2 1608 22 0 0 0 chr6 134143512 134143534 -15373503 + AT_rich Low_complexity Low_complexity 1 22 0 2 1608 345 293 12 0 chr6 134143535 134143617 -15373420 + B1F2 SINE Alu 35 117 -32 2 1608 724 239 47 32 chr6 134143739 134143929 -15373108 + B3 SINE B2 24 216 0 2 1608 576 299 70 16 chr6 134145303 134145490 -15371547 + ID_B1 SINE B4 3 199 -25 2 1608 450 0 0 0 chr6 134145495 134145545 -15371492 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1608 450 0 0 0 chr6 134145545 134145594 -15371443 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1608 486 33 0 0 chr6 134147020 134147080 -15369957 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1608 336 279 56 28 chr6 134147089 134147196 -15369841 - RSINE1 SINE B4 -10 155 46 2 1608 475 296 67 0 chr6 134147396 134147531 -15369506 + ID_B1 SINE B4 78 221 -3 2 1608 979 160 108 20 chr6 134147564 134147768 -15369269 - URR1B DNA MER1_type 0 225 4 2 1608 709 256 57 84 chr6 134148570 134148868 -15368169 + B4 SINE B4 1 290 -2 2 1608 338 85 48 48 chr6 134148938 134149000 -15368037 + HAL1-3A_ME LINE L1 1976 2037 -821 2 1608 206 302 82 36 chr6 134149272 134149382 -15367655 - MIRb SINE MIR -150 118 4 2 1608 261 0 0 0 chr6 134150634 134150663 -15366374 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1608 606 266 56 47 chr6 134151385 134151618 -15365419 + Tigger14a DNA MER2_type 1 235 -89 2 1608 744 262 26 87 chr6 134151797 134151858 -15365179 - B3A SINE B2 0 216 164 2 1608 459 0 0 0 chr6 134151858 134151909 -15365128 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1608 744 260 27 33 chr6 134151909 134152080 -15364957 - B3A SINE B2 -26 172 1 2 1608 301 353 59 12 chr6 134152823 134152992 -15364045 + MIRc SINE MIR 65 241 -27 2 1608 587 204 19 0 chr6 134153189 134153297 -15363740 + RSINE1 SINE B4 32 141 -24 2 1608 345 176 0 63 chr6 134153290 134153369 -15363668 - ID_B1 SINE B4 -69 155 82 2 1608 1633 211 105 16 chr6 134153474 134153854 -15363183 - MTD LTR MaLR -5 414 1 2 1608 403 243 62 18 chr6 134154050 134154163 -15362874 + B4A SINE B4 2 119 -173 2 1608 248 312 53 89 chr6 134154163 134154240 -15362797 + B3A SINE B2 2 184 -14 2 1608 461 202 0 12 chr6 134154530 134154610 -15362427 + ID4_ SINE ID 1 79 -4 2 1608 301 353 59 12 chr6 134155520 134155689 -15361348 - MIRc SINE MIR -27 241 65 2 1608 400 357 65 30 chr6 134156021 134156284 -15360753 + L2 LINE L2 2640 2911 -508 2 1608 377 307 92 48 chr6 134156288 134156538 -15360499 - MIR SINE MIR 0 262 2 2 1608 223 332 155 46 chr6 134156561 134156686 -15360351 - L2b LINE L2 -2 3424 3275 2 1608 479 242 225 55 chr6 134156686 134156922 -15360115 + B4A SINE B4 3 278 -14 2 1608 477 295 222 40 chr6 134156922 134157538 -15359499 - L2b LINE L2 -152 3274 2505 2 1608 351 113 0 0 chr6 134157645 134157698 -15359339 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1608 356 286 72 72 chr6 134160299 134160480 -15356557 - MLT1D LTR MaLR -309 196 16 2 1608 518 286 62 6 chr6 134160699 134160857 -15356180 + ID_B1 SINE B4 42 206 -86 2 1608 360 0 0 0 chr6 134161834 134161874 -15355163 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1608 419 290 162 9 chr6 134163093 134163309 -15353728 - MER2 DNA MER2_type -3 342 94 3 1608 255 191 56 19 chr6 134163348 134163455 -15353582 + (TA)n Simple_repeat Simple_repeat 2 112 0 3 1608 367 148 99 0 chr6 134163893 134163974 -15353063 - Lx8 LINE L1 -2 7471 7383 3 1608 230 204 82 0 chr6 134164037 134164086 -15352951 - RMER15 LTR ERVL -71 504 452 3 1608 945 278 50 50 chr6 134164108 134164411 -15352626 - MTE2a LTR MaLR 0 379 77 3 1608 1143 95 0 0 chr6 134164411 134164558 -15352479 + B1_Mus2 SINE Alu 1 147 0 3 1608 803 304 56 68 chr6 134164558 134164677 -15352360 - MTE2a LTR MaLR -299 120 1 3 1608 496 269 102 66 chr6 134164679 134164971 -15352066 - RMER15 LTR ERVL -148 427 1 3 1608 276 30 0 0 chr6 134165088 134165121 -15351916 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1608 347 316 144 52 chr6 134165165 134165492 -15351545 + L3 LINE CR1 2168 2524 -1965 3 1608 245 146 0 20 chr6 134165545 134165594 -15351443 + T-rich Low_complexity Low_complexity 4 51 0 3 1608 303 315 11 0 chr6 134165601 134165690 -15351347 - ID_B1 SINE B4 -54 170 81 3 1608 316 335 42 66 chr6 134165723 134165740 -15351297 + B4A SINE B4 78 127 -165 3 1608 505 252 0 35 chr6 134165740 134165855 -15351182 + PB1D10 SINE Alu 5 115 -2 3 1608 316 335 42 66 chr6 134165855 134165889 -15351148 + B4A SINE B4 128 239 -53 3 1608 307 319 170 64 chr6 134166087 134166258 -15350779 - L1M5 LINE L1 -392 5732 5544 3 1608 329 171 39 26 chr6 134167320 134167398 -15349639 - MIR SINE MIR -112 150 72 3 1608 222 222 64 34 chr6 134167555 134167643 -15349394 + MIRm SINE MIR 64 159 -117 3 1608 357 24 0 0 chr6 134168397 134168439 -15348598 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1608 405 327 36 12 chr6 134168814 134168981 -15348056 - MIR3 SINE MIR -18 190 20 3 1608 269 226 0 46 chr6 134169291 134169356 -15347681 + polypyrimidine Low_complexity Low_complexity 2 63 0 3 1608 368 324 102 58 chr6 134169740 134169966 -15347071 + MIR SINE MIR 15 250 -12 3 1608 362 128 18 0 chr6 134171267 134171331 -15345706 - B1F SINE Alu -10 139 75 3 1608 267 221 14 42 chr6 134171273 134171344 -15345693 - ID_B1 SINE B4 -10 214 146 3 1608 919 263 83 10 chr6 134171937 134172225 -15344812 - Charlie1b DNA MER1_type -214 309 1 3 1608 498 218 64 0 chr6 134173682 134173792 -15343245 + PB1D10 SINE Alu 1 117 0 3 1608 390 115 0 0 chr6 134173792 134173853 -15343184 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1608 450 0 0 0 chr6 134173853 134173902 -15343135 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1608 2041 199 47 102 chr6 134175013 134175583 -15341454 - Lx5 LINE L1 0 7050 6512 3 1608 310 285 92 7 chr6 134175976 134176128 -15340909 + L1M5 LINE L1 5583 5747 -377 3 1608 211 262 58 23 chr6 134176390 134176476 -15340561 - L2 LINE L2 -788 2631 2543 3 1608 623 319 39 39 chr6 134177877 134178135 -15338902 + B4A SINE B4 35 292 0 3 1608 715 216 15 0 chr6 134178810 134178944 -15338093 + RSINE1 SINE B4 5 140 -25 3 1608 351 0 0 0 chr6 134178978 134179017 -15338020 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1608 287 350 89 46 chr6 134179199 134179436 -15337601 + L3 LINE CR1 4231 4477 -12 3 1608 225 233 107 131 chr6 134180163 134180331 -15336706 + RSINE1 SINE B4 2 165 0 3 1608 325 258 25 4 chr6 134181990 134182085 -15334952 - PB1D10 SINE Alu -9 118 26 3 1608 209 151 19 0 chr6 134182242 134182295 -15334742 + GA-rich Low_complexity Low_complexity 1 54 0 3 1608 450 318 31 38 chr6 134182588 134182748 -15334289 + RSINE1 SINE B4 2 160 -5 3 1608 246 294 37 56 chr6 134182729 134182749 -15334288 - ID_B1 SINE B4 -118 106 85 3 1608 276 30 0 0 chr6 134182749 134182782 -15334255 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1608 474 195 0 0 chr6 134182792 134182869 -15334168 - B3A SINE B2 -121 77 1 3 1608 345 309 59 0 chr6 134183033 134183185 -15333852 - L1MA10 LINE L1 -7 6327 6167 3 1608 22 0 0 0 chr6 134185150 134185172 -15331865 + AT_rich Low_complexity Low_complexity 1 22 0 3 1608 272 313 0 0 chr6 134185407 134185490 -15331547 + MamSINE1 SINE tRNA 10 92 -198 3 1608 267 103 0 0 chr6 134185761 134185800 -15331237 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1608 198 0 0 0 chr6 134186841 134186863 -15330174 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1608 293 307 77 26 chr6 134187232 134187391 -15329646 - MIR SINE MIR 0 268 103 3 1608 273 128 0 0 chr6 134187409 134187456 -15329581 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1608 528 264 90 45 chr6 134187499 134187725 -15329312 - B4A SINE B4 -49 243 8 3 1608 488 301 73 10 chr6 134187999 134188204 -15328833 - ID_B1 SINE B4 -5 219 2 3 1608 324 0 0 0 chr6 134188421 134188457 -15328580 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1608 243 332 146 58 chr6 134188649 134188854 -15328183 + MIR SINE MIR 40 262 0 3 1608 542 242 239 11 chr6 134189958 134190138 -15326899 - ID_B1 SINE B4 -3 221 1 3 1608 773 183 188 6 chr6 134190160 134190336 -15326701 - B3 SINE B2 -5 211 4 3 1608 452 264 132 42 chr6 134190827 134191017 -15326020 - MLT1C LTR MaLR -114 353 147 3 1608 364 203 44 195 chr6 134191038 134191074 -15325963 - MTD LTR MaLR -16 403 376 3 1608 1028 229 10 14 chr6 134191074 134191282 -15325755 + B3 SINE B2 1 207 -9 3 1608 364 203 44 195 chr6 134191282 134191404 -15325633 - MTD LTR MaLR -44 375 269 3 1608 487 219 44 52 chr6 134191863 134191998 -15325039 - MTD LTR MaLR -156 263 130 3 1608 387 265 56 64 chr6 134191998 134192123 -15324914 - MLT1C LTR MaLR -343 124 1 3 1608 405 258 0 63 chr6 134192446 134192528 -15324509 + ID_B1 SINE B4 125 203 -21 3 1608 1190 271 50 6 chr6 134192528 134192891 -15324146 - MTEb LTR MaLR 0 379 1 3 1608 405 258 0 63 chr6 134192891 134192903 -15324134 + ID_B1 SINE B4 204 213 -11 3 1608 225 292 0 111 chr6 134194322 134194335 -15322702 + MT2B2 LTR ERVL 155 158 -426 3 1608 391 284 72 18 chr6 134194335 134194446 -15322591 + PB1D7 SINE Alu 4 120 0 3 1608 228 111 0 0 chr6 134194940 134194976 -15322061 + (TGG)n Simple_repeat Simple_repeat 2 37 0 3 1608 712 241 0 0 chr6 134195334 134195475 -15321562 - B1F SINE Alu -7 142 2 3 1608 305 273 59 86 chr6 134195484 134195636 -15321401 - L1MEf LINE L1 -4871 1329 1182 3 1608 472 314 115 26 chr6 134195709 134196092 -15320945 - L1MEf LINE L1 -5236 964 548 3 1608 306 0 0 0 chr6 134196575 134196609 -15320428 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 1608 21 82 0 0 chr6 134198842 134198891 -15318146 + GC_rich Low_complexity Low_complexity 1 49 0 3 1608 219 292 83 0 chr6 134200114 134200186 -15316851 + B4 SINE B4 88 165 -127 3 1608 213 312 71 59 chr6 134200186 134200199 -15316838 + B1F2 SINE Alu 3 88 -61 3 1608 211 326 10 104 chr6 134200205 134200301 -15316736 + RSINE1 SINE B4 78 164 -1 3 1608 320 299 0 13 chr6 134200335 134200428 -15316609 + ID4 SINE ID 1 92 -60 3 1608 197 178 0 22 chr6 134201114 134201160 -15315877 + GA-rich Low_complexity Low_complexity 2 46 0 3 1608 247 283 10 42 chr6 134201293 134201389 -15315648 + Lx8 LINE L1 5814 5906 -1567 3 1608 571 200 9 0 chr6 134202602 134202707 -15314330 + PB1D9 SINE Alu 5 110 -10 3 1608 888 166 10 26 chr6 134202715 134202910 -15314127 - B3 SINE B2 -8 187 2 3 1608 566 28 14 0 chr6 134202926 134202998 -15314039 + (TAAA)n Simple_repeat Simple_repeat 3 75 0 3 1608 457 266 40 55 chr6 134203598 134203797 -15313240 + MER58A DNA MER1_type 27 222 -2 3 1608 344 186 34 0 chr6 134204155 134204214 -15312823 - B1F1 SINE Alu -88 61 1 3 1608 346 242 145 22 chr6 134204343 134204453 -15312584 - PB1D10 SINE Alu -29 118 1 3 1608 3068 213 59 25 chr6 134204700 134205380 -15311657 + Lx6 LINE L1 6748 7450 -10 3 1608 244 299 0 40 chr6 134206889 134206990 -15310047 - MER20 DNA MER1_type -117 102 6 3 1608 1479 229 33 13 chr6 134207701 134208006 -15309031 - MTE2b LTR MaLR -59 320 10 3 1608 1365 89 0 6 chr6 134208032 134208212 -15308825 + B2_Mm2 SINE B2 2 180 -15 3 1608 699 286 48 21 chr6 134209187 134209376 -15307661 + B4A SINE B4 84 277 -15 3 1608 543 270 17 0 chr6 134209660 134209775 -15307262 + PB1D7 SINE Alu 1 117 -3 3 1608 397 336 26 32 chr6 134209842 134209996 -15307041 - MLT1A LTR MaLR -78 296 144 3 1608 710 242 56 0 chr6 134210000 134210161 -15306876 + B3 SINE B2 1 170 -46 3 1608 413 290 78 21 chr6 134210762 134210903 -15306134 + B4 SINE B4 2 150 -142 3 1608 1000 248 32 90 chr6 134210947 134211257 -15305780 + B4A SINE B4 1 292 0 3 1608 307 240 65 26 chr6 134211257 134211334 -15305703 + B4A SINE B4 201 280 -12 3 1608 871 231 149 10 chr6 134213679 134213932 -15303105 - B4 SINE B4 -1 291 15 3 1608 235 321 142 7 chr6 134214838 134214979 -15302058 + LTR33B LTR ERVL 13 172 -331 3 1608 530 154 3 131 chr6 134215162 134215279 -15301758 + B3 SINE B2 57 170 -46 3 1608 472 236 11 11 chr6 134216069 134216163 -15300874 + B4A SINE B4 1 94 -198 3 1608 29 28 0 0 chr6 134216779 134216815 -15300222 + AT_rich Low_complexity Low_complexity 1 36 0 3 1608 28 0 0 0 chr6 134217689 134217717 -15299320 + AT_rich Low_complexity Low_complexity 1 28 0 3 0 774 159 106 0 chr6 134217721 134217853 -15299184 - B1_Mus2 SINE Alu -1 146 1 3 1609 28 0 0 0 chr6 134220149 134220177 -15296860 + AT_rich Low_complexity Low_complexity 1 28 0 3 1609 575 246 63 43 chr6 134220579 134220769 -15296268 + ID_B1 SINE B4 30 221 -71 3 1609 184 299 98 54 chr6 134221100 134221192 -15295845 + MER5A DNA MER1_type 43 138 -51 3 1609 1006 248 15 0 chr6 134221705 134221911 -15295126 - ID_B1 SINE B4 -1 223 15 3 1609 329 172 0 0 chr6 134222053 134222111 -15294926 - ID4 SINE ID -22 61 4 3 1609 1107 109 147 25 chr6 134222139 134222204 -15294833 - URR1A DNA MER1_type 0 226 163 3 1609 4536 98 3 0 chr6 134222204 134222803 -15294234 - MT2B LTR ERVL 0 601 1 4 1609 1107 109 147 25 chr6 134222803 134222935 -15294102 - URR1A DNA MER1_type -64 162 5 3 1609 271 228 0 17 chr6 134222934 134222992 -15294045 - MER5A1 DNA MER1_type -108 58 2 4 1609 681 328 44 16 chr6 134223437 134223688 -15293349 + B4A SINE B4 3 260 -32 4 1609 360 148 0 0 chr6 134223788 134223849 -15293188 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1609 237 216 20 0 chr6 134224089 134224140 -15292897 - MTE2a LTR MaLR -327 52 1 4 1609 441 295 48 69 chr6 134224200 134224552 -15292485 + L1ME1 LINE L1 5752 6110 -69 4 1609 1139 232 20 48 chr6 134224561 134224855 -15292182 + B4A SINE B4 1 286 -6 4 1609 219 36 0 0 chr6 134224886 134224914 -15292123 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1609 422 222 49 0 chr6 134226178 134226259 -15290778 + B1F1 SINE Alu 26 110 -39 4 1609 680 249 114 0 chr6 134226273 134226466 -15290571 + B3 SINE B2 2 216 0 4 1609 272 354 48 48 chr6 134226892 134227079 -15289958 + MIR SINE MIR 32 218 -44 4 1609 252 0 0 0 chr6 134227837 134227865 -15289172 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 1609 625 263 179 30 chr6 134227956 134228008 -15289029 - B4 SINE B4 -18 274 195 4 1609 585 0 0 0 chr6 134228008 134228073 -15288964 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1609 625 263 179 30 chr6 134228073 134228255 -15288782 - B4 SINE B4 -98 194 6 4 1609 522 163 14 28 chr6 134228871 134229016 -15288021 + CT-rich Low_complexity Low_complexity 2 144 0 4 1609 3664 82 133 2 chr6 134229031 134229556 -15287481 + L1_Mus3 LINE L1 6043 6636 -2 4 1609 950 229 172 24 chr6 134230593 134230812 -15286225 + MTE2b LTR MaLR 10 248 -131 4 1609 612 40 0 0 chr6 134230812 134230887 -15286150 + (CTG)n Simple_repeat Simple_repeat 2 76 0 4 1609 950 229 172 24 chr6 134230887 134230958 -15286079 + MTE2b LTR MaLR 249 342 -37 4 1609 23 0 0 0 chr6 134231442 134231465 -15285572 + AT_rich Low_complexity Low_complexity 1 23 0 4 1609 186 351 80 18 chr6 134231568 134231681 -15285356 - MIR3 SINE MIR -78 130 11 4 1609 683 341 26 18 chr6 134232001 134232273 -15284764 + B4A SINE B4 14 287 -5 4 1609 279 79 0 0 chr6 134232494 134232532 -15284505 + (TGG)n Simple_repeat Simple_repeat 1 38 0 4 1609 185 328 17 0 chr6 134232649 134232707 -15284330 - MIRc SINE MIR -138 130 72 4 1609 368 50 0 6 chr6 134232710 134232767 -15284270 + RLTR17 LTR ERVK 1 55 -390 4 1609 432 0 0 0 chr6 134232900 134232948 -15284089 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1609 363 44 0 0 chr6 134232949 134232994 -15284043 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1609 543 244 0 78 chr6 134232996 134233125 -15283912 + ID_B1 SINE B4 91 209 -15 4 1609 219 69 0 0 chr6 134233136 134233165 -15283872 + (GGA)n Simple_repeat Simple_repeat 1 29 0 4 1609 466 321 91 25 chr6 134233576 134234049 -15282988 + L1MEc LINE L1 1935 2438 -3962 4 1609 854 150 22 8 chr6 134234051 134234185 -15282852 + B1_Mur4 SINE Alu 1 136 -14 4 1609 612 0 0 0 chr6 134234187 134234255 -15282782 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 4 1609 1263 57 17 0 chr6 134234255 134234432 -15282605 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1609 3419 74 0 11 chr6 134234850 134235289 -15281748 + L1_Mus1 LINE L1 6134 6567 0 4 1609 194 280 138 62 chr6 134235314 134235394 -15281643 - L2c LINE L2 -4 3383 3298 4 1609 523 292 124 0 chr6 134235440 134235618 -15281419 + RMER30 DNA MER1_type 2 201 -1 4 1609 552 30 0 0 chr6 134235724 134235790 -15281247 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1609 219 188 0 0 chr6 134235790 134235838 -15281199 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1609 245 306 14 0 chr6 134235859 134235931 -15281106 + ID4_ SINE ID 5 77 -6 4 1609 255 371 31 0 chr6 134236072 134236169 -15280868 - ORR1E LTR MaLR -215 144 45 4 1609 311 295 77 43 chr6 134236416 134236533 -15280504 + L1MEc LINE L1 3740 3860 -2459 4 1609 406 244 127 62 chr6 134237734 134237868 -15279169 + MLT1A1 LTR MaLR 305 459 -8 4 1609 528 238 10 10 chr6 134237967 134238069 -15278968 + PB1D10 SINE Alu 3 104 -13 4 1609 216 0 0 0 chr6 134238069 134238093 -15278944 + (TTTTTG)n Simple_repeat Simple_repeat 4 27 0 4 1609 2168 142 15 78 chr6 134238342 134238781 -15278256 - ORR1B1 LTR MaLR -8 413 1 4 1609 523 300 20 13 chr6 134239046 134239125 -15277912 + B4A SINE B4 8 87 -205 4 1609 274 253 176 0 chr6 134239125 134239216 -15277821 + PB1D10 SINE Alu 3 109 -8 4 1609 306 106 0 0 chr6 134239281 134239328 -15277709 + (CCA)n Simple_repeat Simple_repeat 1 47 0 4 1609 568 266 145 41 chr6 134239616 134239934 -15277103 + L1MA6 LINE L1 5944 6294 -6 4 1609 920 229 28 32 chr6 134239948 134240165 -15276872 - B3 SINE B2 0 216 1 4 1609 358 335 65 38 chr6 134240405 134240591 -15276446 - L1MC1 LINE L1 -10 6323 6133 4 1609 1617 277 131 24 chr6 134240605 134241659 -15275378 - L1MC1 LINE L1 -246 6087 4917 4 1609 708 12 0 0 chr6 134241667 134241748 -15275289 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1609 393 161 0 0 chr6 134241763 134241825 -15275212 - RMER1A Other Other -946 84 23 4 1609 787 150 120 0 chr6 134242204 134242337 -15274700 + B1_Mur4 SINE Alu 1 149 -1 4 1609 21 0 0 0 chr6 134243156 134243177 -15273860 + AT_rich Low_complexity Low_complexity 1 21 0 4 1609 948 118 0 7 chr6 134243649 134243785 -15273252 + B1_Mus2 SINE Alu 1 135 -12 4 1609 3248 204 111 101 chr6 134243865 134244880 -15272157 + RMER1B Other Other 12 1037 -29 4 1609 396 0 0 0 chr6 134244890 134244934 -15272103 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1609 425 305 10 139 chr6 134244952 134245146 -15271891 + B3A SINE B2 25 193 -5 4 1609 300 348 37 37 chr6 134245318 134245506 -15271531 + L1M4 LINE L1 4486 4673 -1473 4 1609 311 306 132 58 chr6 134245642 134245827 -15271210 + L1MD LINE L1 4791 4988 -1158 4 1609 678 247 38 0 chr6 134245827 134245985 -15271052 + RSINE1 SINE B4 2 165 0 4 1609 311 306 132 58 chr6 134245985 134246042 -15270995 + L1MD LINE L1 4989 5051 -1095 4 1609 576 65 0 0 chr6 134246388 134246465 -15270572 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1609 25 0 0 0 chr6 134246784 134246809 -15270228 + AT_rich Low_complexity Low_complexity 1 25 0 4 1609 185 143 48 0 chr6 134246811 134246853 -15270184 + GA-rich Low_complexity Low_complexity 2 45 0 4 1609 369 0 0 0 chr6 134246918 134246959 -15270078 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 4 1609 1476 63 16 0 chr6 134247095 134247285 -15269752 - B2_Mm1a SINE B2 0 193 1 4 1609 225 342 13 0 chr6 134247382 134247458 -15269579 + L1MC LINE L1 5530 5606 -2276 4 1609 395 292 56 39 chr6 134247975 134248153 -15268884 + B3A SINE B2 1 181 -17 4 1609 995 286 125 26 chr6 134248185 134248602 -15268435 - MLT1G LTR MaLR -27 564 107 4 1609 423 193 0 0 chr6 134249181 134249269 -15267768 + CT-rich Low_complexity Low_complexity 1 88 0 4 1609 934 275 73 12 chr6 134249275 134249522 -15267515 - B4A SINE B4 -26 266 5 4 1609 598 300 55 33 chr6 134249711 134250136 -15266901 - L1MB3 LINE L1 -1 6179 5739 4 1609 478 221 21 21 chr6 134250380 134250477 -15266560 - B4 SINE B4 -195 97 1 4 1609 1313 233 148 3 chr6 134250723 134251089 -15265948 - MTD LTR MaLR 0 419 1 4 1609 237 373 24 51 chr6 134251095 134251349 -15265688 + L2c LINE L2 2910 3156 -231 4 1609 540 0 0 0 chr6 134251738 134251798 -15265239 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1609 472 216 228 32 chr6 134251944 134252102 -15264935 - B3A SINE B2 -9 189 1 4 1609 2577 70 3 9 chr6 134252217 134252546 -15264491 - ORR1A2 LTR MaLR 0 327 1 4 1609 233 367 70 27 chr6 134253202 134253387 -15263650 - L2c LINE L2 -145 3242 3050 4 1609 874 193 83 26 chr6 134253437 134253630 -15263407 - ORR1C2 LTR MaLR -4 380 172 4 1609 1515 6 0 0 chr6 134253630 134253802 -15263235 + (GGGAA)n Simple_repeat Simple_repeat 4 175 0 4 1609 472 295 65 65 chr6 134253802 134253822 -15263215 - ORR1C2 LTR MaLR -199 171 153 4 1609 426 154 38 9 chr6 134253828 134253933 -15263104 + GA-rich Low_complexity Low_complexity 5 112 0 4 1609 844 165 25 90 chr6 134253935 134254135 -15262902 - ORR1C2 LTR MaLR -197 187 1 4 1609 485 311 107 39 chr6 134254372 134254858 -15262179 + L1MC4a LINE L1 5354 5872 -2010 4 1609 324 0 0 0 chr6 134256276 134256312 -15260725 + (TTA)n Simple_repeat Simple_repeat 1 36 0 4 1609 180 0 0 0 chr6 134256363 134256383 -15260654 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1609 225 277 0 0 chr6 134256627 134256674 -15260363 + ID SINE ID 27 73 -151 4 1609 213 328 0 0 chr6 134256674 134256685 -15260352 + ID4 SINE ID 26 83 0 4 1609 509 253 28 107 chr6 134256718 134256895 -15260142 + ID_B1 SINE B4 54 216 -8 4 1609 566 269 20 14 chr6 134256903 134257050 -15259987 + B1_Mur1 SINE Alu 2 149 0 4 1609 1140 85 17 0 chr6 134257110 134257191 -15259846 + (GGA)n Simple_repeat Simple_repeat 1 84 0 4 1609 1103 122 0 11 chr6 134257191 134257373 -15259664 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1609 1140 85 17 0 chr6 134257373 134257468 -15259569 + (GGA)n Simple_repeat Simple_repeat 1 95 0 4 1609 2673 96 32 59 chr6 134257841 134258284 -15258753 + Lx LINE L1 6224 6654 0 4 1609 259 254 31 31 chr6 134258666 134258717 -15258320 - ID_B1 SINE B4 -12 212 162 4 1609 1245 190 178 14 chr6 134258717 134259010 -15258027 + ORR1D1 LTR MaLR 1 341 -33 4 1609 5604 65 4 7 chr6 134260017 134260736 -15256301 - L1_Mus2 LINE L1 -1 6565 5849 4 1609 652 215 199 22 chr6 134260890 134261071 -15255966 + B3 SINE B2 1 213 -3 4 1609 1098 119 6 0 chr6 134261217 134261385 -15255652 + URR1A DNA MER1_type 57 225 -1 4 1609 423 0 0 0 chr6 134262364 134262411 -15254626 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1609 258 32 0 0 chr6 134262420 134262451 -15254586 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 1609 747 259 86 56 chr6 134262452 134262685 -15254352 - B4 SINE B4 -27 265 26 4 1609 1085 255 132 33 chr6 134263441 134263867 -15253170 + RMER5 LTR ERV1 62 529 -5 4 1609 329 324 104 36 chr6 134264003 134264234 -15252803 + MTEb LTR MaLR 126 379 0 5 1609 906 245 41 58 chr6 134264312 134264607 -15252430 - B4A SINE B4 -2 290 1 5 1609 224 335 80 75 chr6 134265238 134265451 -15251586 + MIRb SINE MIR 53 266 -2 5 1609 448 96 41 0 chr6 134265495 134265568 -15251469 - RMER1A Other Other 0 1030 955 5 1609 271 257 75 56 chr6 134266419 134266526 -15250511 + MIR SINE MIR 53 161 -101 5 1609 759 207 106 0 chr6 134267030 134267218 -15249819 + B3 SINE B2 4 211 -5 5 1609 24 0 0 0 chr6 134267249 134267273 -15249764 + AT_rich Low_complexity Low_complexity 1 24 0 5 1609 319 287 132 47 chr6 134267470 134267660 -15249377 - L3 LINE CR1 -3 4486 4281 5 1609 185 129 32 0 chr6 134267829 134267860 -15249177 + MIR SINE MIR 114 145 -63 5 1609 366 339 0 17 chr6 134268178 134268295 -15248742 + PB1D10 SINE Alu 1 115 -2 5 1609 186 43 0 0 chr6 134268458 134268481 -15248556 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1609 360 0 0 0 chr6 134268481 134268520 -15248517 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1609 513 311 103 8 chr6 134268720 134268973 -15248064 + B4A SINE B4 1 277 -15 5 1609 393 22 0 0 chr6 134269049 134269095 -15247942 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1609 477 50 0 0 chr6 134269484 134269544 -15247493 + (TCC)n Simple_repeat Simple_repeat 2 61 0 5 1609 469 329 85 39 chr6 134269570 134269900 -15247137 + MLT1B LTR MaLR 6 366 -24 5 1609 729 314 61 22 chr6 134269909 134270243 -15246794 - ORR1E LTR MaLR -6 373 1 5 1609 1885 319 70 2 chr6 134270243 134270857 -15246180 - MTE-int LTR MaLR -53 1527 871 5 1609 922 306 151 12 chr6 134270839 134271262 -15245775 - MTE-int LTR MaLR -1096 484 3 5 1609 2143 179 60 2 chr6 134271321 134271719 -15245318 + MTC LTR MaLR 1 421 0 5 1609 705 279 47 51 chr6 134271760 134271975 -15245062 - MTEa LTR MaLR -165 214 1 5 1609 2390 62 58 6 chr6 134272365 134272676 -15244361 - ORR1A2 LTR MaLR 0 327 1 5 1609 231 300 130 8 chr6 134272864 134272995 -15244042 + B1_Mus1 SINE Alu 2 148 0 5 1609 629 36 24 0 chr6 134273052 134273135 -15243902 + (TCCC)n Simple_repeat Simple_repeat 1 85 0 5 1609 252 86 0 0 chr6 134273854 134273889 -15243148 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 5 1609 256 78 59 0 chr6 134273992 134274043 -15242994 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 5 1609 2679 145 82 30 chr6 134274443 134274743 -15242294 - RLTR28 LTR ERVL 0 524 233 5 1609 1108 84 0 0 chr6 134274743 134274886 -15242151 - B1_Mus1 SINE Alu -5 143 1 5 1609 2679 145 82 30 chr6 134274886 134275083 -15241954 - RLTR28 LTR ERVL -292 232 1 5 1609 732 203 36 0 chr6 134275130 134275268 -15241769 + B1_Mur2 SINE Alu 6 148 -1 5 1609 219 343 88 0 chr6 134275277 134275379 -15241658 - MIRc SINE MIR -154 114 4 5 1609 1108 190 93 22 chr6 134276462 134276724 -15240313 - MTD LTR MaLR -7 412 100 5 1609 2024 22 0 0 chr6 134276724 134276952 -15240085 + L1Md_T LINE L1 5359 5586 -297 5 1609 8656 29 0 2 chr6 134276952 134277950 -15239087 + L1Md_T LINE L1 5587 6582 0 5 1609 1330 160 17 8 chr6 134278018 134278258 -15238779 + RLTR28 LTR ERVL 243 484 -40 5 1609 2427 161 0 3 chr6 134278281 134278660 -15238377 - MTC LTR MaLR -31 390 13 5 1609 369 174 0 0 chr6 134278660 134278729 -15238308 + A-rich Low_complexity Low_complexity 1 69 0 5 1609 214 385 91 38 chr6 134278735 134278921 -15238116 - MIR SINE MIR -51 211 16 5 1609 208 129 0 0 chr6 134279109 134279140 -15237897 + L2b LINE L2 3330 3360 -15 5 1609 417 294 66 0 chr6 134280562 134280698 -15236339 - MLT1B LTR MaLR -2 388 244 5 1609 270 264 82 97 chr6 134280728 134280862 -15236175 - MLT1B LTR MaLR -242 132 1 5 1609 327 246 49 66 chr6 134280869 134280991 -15236046 + L1MB7 LINE L1 4965 5084 -1062 5 1609 667 197 193 63 chr6 134281028 134281282 -15235755 + B4A SINE B4 5 291 -1 5 1609 499 316 98 48 chr6 134281448 134281566 -15235471 - Lx8 LINE L1 -20 7453 7323 5 1609 387 41 0 0 chr6 134281566 134281615 -15235422 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1609 499 316 98 48 chr6 134281615 134281812 -15235225 - Lx8 LINE L1 -151 7322 7122 5 1609 1746 254 76 36 chr6 134281812 134282743 -15234294 + L1MB7 LINE L1 5152 6126 -58 5 1609 198 0 0 0 chr6 134283260 134283282 -15233755 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1609 539 243 44 0 chr6 134283575 134283711 -15233326 + B1F1 SINE Alu 7 148 -1 5 1609 271 235 136 0 chr6 134283931 134284012 -15233025 + L1M5 LINE L1 5694 5785 -339 5 1609 847 245 57 0 chr6 134284083 134284295 -15232742 - ID_B1 SINE B4 0 224 1 5 1609 1063 115 14 0 chr6 134284479 134284627 -15232410 - B1_Mur4 SINE Alu 0 150 1 5 1609 3012 92 16 12 chr6 134285368 134285795 -15231242 + Lx3_Mus LINE L1 6573 7001 -8 5 1609 846 267 168 8 chr6 134285795 134286158 -15230879 + L1MA4A LINE L1 5346 5766 -534 5 1609 427 129 0 0 chr6 134286158 134286220 -15230817 + MTB LTR MaLR 1 62 -332 5 1609 5095 51 2 2 chr6 134286221 134286847 -15230190 + L1Md_F2 LINE L1 5957 6582 0 5 1609 1746 46 0 9 chr6 134286863 134287084 -15229953 + MTB LTR MaLR 182 400 0 5 1609 24 32 0 0 chr6 134287220 134287251 -15229786 + AT_rich Low_complexity Low_complexity 1 31 0 5 1609 1707 134 92 0 chr6 134287274 134287566 -15229471 + ORR1B1 LTR MaLR 76 394 0 5 1609 541 241 62 34 chr6 134287571 134287794 -15229243 + L1MA4A LINE L1 5767 6000 -291 5 1609 1475 136 5 0 chr6 134287806 134288026 -15229011 + URR1B DNA MER1_type 5 225 0 5 1609 740 133 20 34 chr6 134288073 134288221 -15228816 + ORR1B1 LTR MaLR 1 146 -248 5 1609 264 149 0 63 chr6 134288212 134288291 -15228746 + ORR1B2 LTR MaLR 44 117 -250 5 1609 275 92 0 28 chr6 134288292 134288369 -15228668 + ORR1B1 LTR MaLR 44 119 -275 5 1609 1950 134 11 78 chr6 134288369 134288726 -15228311 + ORR1B1 LTR MaLR 62 394 0 5 1609 180 0 0 0 chr6 134288759 134288779 -15228258 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1609 555 234 109 32 chr6 134288854 134289091 -15227946 - L1_Rod LINE L1 -739 5558 5278 5 1609 9656 100 14 13 chr6 134289096 134290679 -15226358 - Lx3B LINE L1 -4 6969 5399 5 1609 2857 207 5 36 chr6 134290702 134291283 -15225754 + Lx9 LINE L1 6563 7125 -519 5 1609 1156 110 25 6 chr6 134291287 134291461 -15225576 - ORR1A4 LTR MaLR 0 378 82 5 1609 198 0 0 0 chr6 134291461 134291483 -15225554 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1609 973 209 100 65 chr6 134291483 134291553 -15225484 - ORR1A4 LTR MaLR -186 192 175 5 1609 1039 245 28 61 chr6 134291559 134291736 -15225301 + Lx9 LINE L1 7131 7306 -338 5 1609 3333 58 2 0 chr6 134291736 134292135 -15224902 - MTB LTR MaLR 0 400 1 5 1609 1039 245 28 61 chr6 134292135 134292253 -15224784 + Lx9 LINE L1 7307 7418 -226 5 1609 266 73 24 0 chr6 134292253 134292294 -15224743 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 5 1609 1039 245 28 61 chr6 134292294 134292323 -15224714 + Lx9 LINE L1 7419 7445 -199 5 1609 292 174 140 20 chr6 134292350 134292450 -15224587 + Lx9 LINE L1 7531 7642 -2 5 1609 338 266 2 0 chr6 134292447 134292541 -15224496 - L1_Mur3 LINE L1 -1056 4824 4728 5 1609 730 181 90 0 chr6 134292699 134292832 -15224205 - B1_Mur2 SINE Alu -4 145 1 5 1609 261 213 40 0 chr6 134292971 134293046 -15223991 - L1M5 LINE L1 -320 5804 5727 5 1609 197 300 99 9 chr6 134293966 134294077 -15222960 - MIR3 SINE MIR -86 122 2 5 1609 914 289 33 79 chr6 134295461 134295550 -15221487 - B4A SINE B4 0 292 216 5 1609 1223 61 0 0 chr6 134295550 134295697 -15221340 - B1_Mus2 SINE Alu 0 147 1 5 1609 914 289 33 79 chr6 134295697 134295911 -15221126 - B4A SINE B4 -77 215 3 5 1609 356 320 190 92 chr6 134296127 134296160 -15220877 + MLT1J LTR MaLR 21 49 -463 5 1609 1019 167 172 0 chr6 134296160 134296352 -15220685 + URR1B DNA MER1_type 1 225 0 5 1609 356 320 190 92 chr6 134296352 134296707 -15220330 + MLT1J LTR MaLR 50 447 -65 5 1609 680 189 61 0 chr6 134296708 134296840 -15220197 - B1_Mur1 SINE Alu -7 142 3 5 1609 299 188 116 2 chr6 134297441 134297521 -15219516 - B1_Mur1 SINE Alu -20 129 39 5 1609 359 371 22 40 chr6 134297513 134297735 -15219302 - Kanga1 DNA Tc2 -1459 286 69 5 1609 285 29 0 0 chr6 134298099 134298133 -15218904 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1609 612 190 83 0 chr6 134298485 134298606 -15218431 + B1_Mur2 SINE Alu 2 132 -17 5 1609 443 226 45 36 chr6 134298646 134298756 -15218281 + PB1D10 SINE Alu 7 117 0 5 1609 6678 88 11 12 chr6 134298849 134299655 -15217382 - L1_Mus3 LINE L1 -2 6636 5830 5 1609 2850 95 22 0 chr6 134299655 134300067 -15216970 - BGLII LTR ERVK 0 421 1 5 1609 6678 88 11 12 chr6 134300067 134300189 -15216848 - L1_Mus3 LINE L1 -809 5829 5709 5 1609 231 203 143 39 chr6 134300326 134300403 -15216634 - ORR1B2 LTR MaLR -278 89 5 5 1609 715 231 126 6 chr6 134300609 134300783 -15216254 - B3A SINE B2 -3 195 1 5 1609 421 308 50 0 chr6 134301286 134301445 -15215592 - Lx9 LINE L1 -171 7473 7307 5 1609 560 246 49 0 chr6 134301579 134301721 -15215316 - B1F SINE Alu 0 149 1 5 1609 522 0 0 0 chr6 134301812 134301870 -15215167 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1609 317 287 121 17 chr6 134302807 134302982 -15214055 - MLT1A0 LTR MaLR 0 408 216 5 1609 698 287 91 0 chr6 134303020 134303229 -15213808 - MLT2B2 LTR ERVL -73 442 215 5 1609 759 307 19 5 chr6 134303224 134303430 -15213607 + ID_B1 SINE B4 16 224 0 5 1609 1256 279 56 23 chr6 134303462 134303854 -15213183 - MTD LTR MaLR -14 405 1 5 1609 298 252 182 64 chr6 134303864 134303974 -15213063 - MLT2B2 LTR ERVL -302 213 91 5 1609 245 198 143 55 chr6 134304115 134304206 -15212831 + MLT1K LTR MaLR 496 594 -1 5 1609 305 279 45 23 chr6 134304757 134304845 -15212192 - Tigger7 DNA MER2_type -1881 610 521 5 1609 657 323 0 4 chr6 134304871 134305129 -15211908 + L1M2 LINE L1 5127 5383 -760 5 1609 303 85 0 0 chr6 134305178 134305225 -15211812 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1609 342 265 137 6 chr6 134305258 134305463 -15211574 - L1MA4 LINE L1 -262 5894 5627 5 1609 323 253 22 0 chr6 134305463 134305554 -15211483 + L1M2 LINE L1 4661 4753 -1390 5 1609 707 267 68 82 chr6 134305592 134305868 -15211169 + Arthur1 DNA Tip100 3103 3375 -572 5 1609 1123 101 0 0 chr6 134305868 134306016 -15211021 + B1_Mus1 SINE Alu 1 148 0 5 1609 707 267 68 82 chr6 134306016 134306213 -15210824 + Arthur1 DNA Tip100 3376 3568 -379 5 1609 269 330 11 0 chr6 134306253 134306344 -15210693 + PB1D10 SINE Alu 1 92 -25 5 1609 253 250 66 0 chr6 134306593 134306669 -15210368 + L1MA6 LINE L1 6038 6118 -182 5 1609 246 250 157 23 chr6 134306684 134306856 -15210181 + L1MA6 LINE L1 6082 6276 -24 6 1609 478 284 41 16 chr6 134306868 134307040 -15209997 - B3A SINE B2 -2 214 40 6 1609 489 303 48 21 chr6 134307092 134307237 -15209800 + RSINE1 SINE B4 1 149 -16 6 1609 201 108 0 0 chr6 134307238 134307275 -15209762 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 6 1609 416 279 58 64 chr6 134307434 134307606 -15209431 + B4A SINE B4 1 171 -121 6 1609 290 65 0 61 chr6 134308065 134308131 -15208906 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 6 1609 185 317 0 35 chr6 134308283 134308368 -15208669 - L2a LINE L2 0 3426 3345 6 1609 1012 257 116 17 chr6 134308613 134308958 -15208079 + MTEa LTR MaLR 1 379 0 6 1609 720 224 7 13 chr6 134309036 134309185 -15207852 + B1_Mur2 SINE Alu 1 148 -1 6 1609 200 75 24 48 chr6 134309186 134309228 -15207809 + (CAAAAA)n Simple_repeat Simple_repeat 4 44 0 6 1609 656 324 113 42 chr6 134309449 134309892 -15207145 + LTR40a LTR ERVL 2 454 -8 6 1609 288 353 83 31 chr6 134309908 134310101 -15206936 - MLT1I LTR MaLR -5 406 204 6 1609 468 0 0 0 chr6 134310521 134310573 -15206464 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1609 439 203 0 0 chr6 134310756 134310830 -15206207 + B2_Mm2 SINE B2 1 74 -121 6 1609 315 225 56 11 chr6 134310818 134310895 -15206142 + B3A SINE B2 103 184 -14 6 1609 186 43 0 0 chr6 134310895 134310918 -15206119 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1609 315 204 120 93 chr6 134310918 134310948 -15206089 + B3A SINE B2 185 211 -5 6 1609 3340 101 88 54 chr6 134311241 134311819 -15205218 + RMER21B LTR ERV1 1 598 -244 6 1609 1022 80 7 14 chr6 134311823 134311963 -15205074 + B1_Mus1 SINE Alu 10 148 0 6 1609 1423 144 45 45 chr6 134311963 134312045 -15204992 + RMER21B LTR ERV1 574 660 -182 6 1609 3207 53 2 8 chr6 134312045 134312443 -15204594 - MTA_Mm LTR MaLR 0 396 1 6 1609 1423 144 45 45 chr6 134312443 134312629 -15204408 + RMER21B LTR ERV1 661 842 0 6 1609 1191 269 89 9 chr6 134313220 134313547 -15203490 - MTEb LTR MaLR 0 379 27 6 1609 289 334 0 11 chr6 134313583 134313691 -15203346 + ID4 SINE ID 6 109 -43 6 1609 356 330 0 0 chr6 134314025 134314131 -15202906 + PB1D10 SINE Alu 3 108 -9 6 1609 339 270 11 22 chr6 134314138 134314229 -15202808 + GA-rich Low_complexity Low_complexity 2 91 0 6 1609 207 0 0 0 chr6 134315031 134315054 -15201983 + (TGG)n Simple_repeat Simple_repeat 1 23 0 6 1609 504 0 0 0 chr6 134315054 134315110 -15201927 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1609 511 257 167 72 chr6 134315192 134315456 -15201581 + B4A SINE B4 4 292 0 6 1609 298 329 0 0 chr6 134315458 134315540 -15201497 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1609 258 105 0 0 chr6 134317217 134317255 -15199782 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1609 439 306 90 73 chr6 134317996 134318296 -15198741 - MTEa LTR MaLR -43 336 32 6 1609 183 80 0 0 chr6 134318782 134318807 -15198230 + (GA)n Simple_repeat Simple_repeat 1 25 0 6 1609 191 231 51 0 chr6 134319020 134319059 -15197978 + L3 LINE CR1 3313 3353 -1136 6 1609 325 246 0 0 chr6 134319390 134319447 -15197590 + ID4 SINE ID 4 60 -23 6 1609 231 256 0 0 chr6 134319467 134319510 -15197527 - B1F SINE Alu -49 100 58 6 1609 4244 180 33 42 chr6 134319519 134320395 -15196642 + RMER13B LTR ERVK 7 874 -34 6 1609 277 314 22 82 chr6 134320433 134320568 -15196469 + MLT2B3 LTR ERVL 21 147 -407 6 1609 576 0 0 0 chr6 134320908 134320972 -15196065 + (TC)n Simple_repeat Simple_repeat 2 65 0 6 1609 274 184 26 0 chr6 134320972 134321048 -15195989 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 1609 839 280 57 37 chr6 134321076 134321321 -15195716 - B4A SINE B4 0 292 43 6 1609 1024 249 168 32 chr6 134322115 134322484 -15194553 - MTD LTR MaLR 0 419 1 6 1609 334 311 34 51 chr6 134322484 134322662 -15194375 - MER58B DNA MER1_type -134 207 2 6 1609 328 244 22 11 chr6 134324215 134324306 -15192731 + PB1D10 SINE Alu 26 117 0 6 1609 719 286 135 27 chr6 134324315 134324574 -15192463 + B4A SINE B4 6 292 0 6 1609 309 183 0 0 chr6 134324574 134324634 -15192403 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1609 1110 199 19 5 chr6 134324733 134324940 -15192097 + B3 SINE B2 1 210 -6 6 1609 996 122 0 20 chr6 134324943 134325094 -15191943 - B1_Mur3 SINE Alu 0 149 2 6 1609 265 278 24 94 chr6 134325694 134325821 -15191216 + B3A SINE B2 1 118 -80 6 1609 678 289 37 21 chr6 134325724 134325915 -15191122 + B4A SINE B4 27 220 -72 6 1609 299 205 0 179 chr6 134326185 134326280 -15190757 + B4A SINE B4 215 292 0 6 1609 637 160 15 0 chr6 134326451 134326582 -15190455 + Lx2 LINE L1 6823 6955 -42 6 1609 277 145 32 0 chr6 134328329 134328391 -15188646 + CT-rich Low_complexity Low_complexity 4 67 0 6 1609 1263 202 119 14 chr6 134329479 134329841 -15187196 + L1MA9 LINE L1 5725 6124 -188 6 1609 675 0 0 0 chr6 134329857 134329932 -15187105 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 1609 1358 220 94 44 chr6 134329939 134330110 -15186927 + ORR1E LTR MaLR 1 181 -178 6 1609 2191 154 41 28 chr6 134330110 134330497 -15186540 - ORR1B1 LTR MaLR 0 394 3 6 1609 1358 220 94 44 chr6 134330497 134330667 -15186370 + ORR1E LTR MaLR 182 359 0 6 1609 255 154 142 80 chr6 134330821 134330934 -15186103 + Lx8 LINE L1 7353 7472 -1 6 1609 315 104 0 0 chr6 134330988 134331036 -15186001 + (ATG)n Simple_repeat Simple_repeat 1 48 0 6 1609 625 306 12 0 chr6 134331036 134331196 -15185841 + RSINE1 SINE B4 4 165 0 6 1609 876 20 0 0 chr6 134331246 134331348 -15185689 + (GGAAA)n Simple_repeat Simple_repeat 4 105 0 6 1609 342 186 115 67 chr6 134331933 134332037 -15185000 + PB1D10 SINE Alu 1 109 -8 6 1609 593 119 109 0 chr6 134332125 134332226 -15184811 + PB1D9 SINE Alu 1 112 -8 6 1609 708 12 0 0 chr6 134332226 134332307 -15184730 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 6 1609 400 282 47 0 chr6 134332325 134332410 -15184627 + RSINE1 SINE B4 47 135 -30 6 1609 594 0 0 0 chr6 134332411 134332477 -15184560 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1609 570 98 0 0 chr6 134332477 134332558 -15184479 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1609 237 297 0 139 chr6 134332594 134332680 -15184357 + RSINE1 SINE B4 7 80 -212 6 1609 1377 229 234 9 chr6 134332792 134333219 -15183818 + RMER15 LTR ERVL 51 573 -2 6 1609 292 203 12 60 chr6 134333221 134333305 -15183732 + RSINE1 SINE B4 76 155 -10 6 1609 1305 95 30 55 chr6 134333354 134333589 -15183448 - Lx2A LINE L1 -1 7007 6779 6 1609 414 279 35 14 chr6 134334235 134334377 -15182660 + B1F2 SINE Alu 3 147 -2 6 1609 215 244 0 0 chr6 134334444 134334479 -15182558 + ID4_ SINE ID 37 71 -12 6 1609 400 48 0 31 chr6 134334479 134334544 -15182493 + (CCA)n Simple_repeat Simple_repeat 2 64 0 6 1609 1230 87 64 0 chr6 134335625 134335797 -15181240 + B2_Mm2 SINE B2 1 183 -12 6 1609 210 71 0 0 chr6 134335797 134335825 -15181212 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 6 1609 855 166 14 20 chr6 134336197 134336345 -15180692 + B3 SINE B2 1 147 -69 6 1609 414 336 26 98 chr6 134337054 134337433 -15179604 - MLT1A LTR MaLR 0 374 23 6 1609 533 277 46 20 chr6 134338187 134338338 -15178699 + ID_B1 SINE B4 1 155 -69 6 1609 385 276 9 19 chr6 134338433 134338540 -15178497 - PB1D10 SINE Alu -2 115 10 6 1609 275 314 0 0 chr6 134338535 134338605 -15178432 + MER5B DNA MER1_type 34 103 -75 6 1609 219 182 91 0 chr6 134338830 134338874 -15178163 + MER5A DNA MER1_type 10 57 -132 6 1609 546 29 0 0 chr6 134339555 134339623 -15177414 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1609 492 260 41 100 chr6 134340351 134340483 -15176554 + L1MDa LINE L1 1884 2008 -4625 6 1609 1183 56 0 0 chr6 134340483 134340625 -15176412 + B1_Mus2 SINE Alu 1 142 -5 6 1609 492 260 41 100 chr6 134340625 134340783 -15176254 + L1MDa LINE L1 2009 2157 -4476 6 1609 1317 190 95 35 chr6 134340783 134341162 -15175875 - RMER16 LTR ERVK 0 533 1 6 1609 476 270 22 39 chr6 134341165 134341346 -15175691 + L1MDa LINE L1 2155 2332 -4301 6 1609 289 206 50 35 chr6 134341372 134341513 -15175524 + (TAGA)n Simple_repeat Simple_repeat 4 146 0 6 1609 257 179 219 0 chr6 134341513 134341664 -15175373 + L1MDa LINE L1 2306 2489 -4144 6 1609 1179 62 7 0 chr6 134341758 134341903 -15175134 + B1_Mus1 SINE Alu 2 147 -1 6 1609 580 132 0 0 chr6 134341928 134342011 -15175026 - B1_Mus2 SINE Alu -61 86 4 6 1609 444 252 19 19 chr6 134342011 134342025 -15175012 - B4 SINE B4 -111 149 77 6 1609 1426 191 42 48 chr6 134342067 134342402 -15174635 + Lx7 LINE L1 7364 7696 0 6 1609 314 237 113 85 chr6 134342416 134342522 -15174515 + L1M LINE L1 5320 5428 -2454 6 1609 1994 162 47 8 chr6 134343701 134344061 -15172976 - ORR1D1 LTR MaLR 0 374 1 6 1609 325 281 128 75 chr6 134344269 134344496 -15172541 - L1M4c LINE L1 -5027 1357 1119 6 1609 273 269 115 0 chr6 134344890 134344968 -15172069 + MTE2a LTR MaLR 1 87 -292 6 1609 600 320 93 6 chr6 134345136 134345318 -15171719 + MTE2a LTR MaLR 72 269 -110 6 1609 910 263 81 15 chr6 134345770 134346029 -15171008 - Lx8 LINE L1 -555 6918 6643 6 1609 419 366 35 39 chr6 134346250 134346506 -15170531 + Tigger16b DNA Tigger 77 331 -6 6 1609 326 282 88 26 chr6 134346793 134346906 -15170131 + MER2 DNA MER2_type 2 121 -224 6 1609 232 282 115 0 chr6 134346919 134346997 -15170040 - ORR1E LTR MaLR 0 379 293 6 1609 255 327 106 26 chr6 134347107 134347220 -15169817 - ORR1E LTR MaLR -180 179 58 6 1609 473 304 16 0 chr6 134347255 134347380 -15169657 + MER2 DNA MER2_type 134 260 -85 6 1609 2130 165 24 22 chr6 134347678 134348049 -15168988 + ORR1D1 LTR MaLR 3 374 0 6 1610 184 177 41 20 chr6 134348914 134349012 -15168025 + T-rich Low_complexity Low_complexity 3 102 0 6 1610 245 283 254 9 chr6 134349073 134349187 -15167850 - PB1 SINE Alu -7 142 1 6 1610 542 234 19 0 chr6 134349268 134349375 -15167662 - PB1D10 SINE Alu -7 110 2 6 1610 608 280 208 11 chr6 134349375 134349851 -15167186 - L1MA7 LINE L1 -46 6245 5676 6 1610 262 320 29 86 chr6 134350077 134350217 -15166820 - MIR SINE MIR -27 235 104 7 1610 580 26 13 13 chr6 134350310 134350389 -15166648 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 1610 258 282 57 22 chr6 134350815 134350915 -15166122 - MIR SINE MIR -88 120 13 7 1610 334 313 61 8 chr6 134350944 134351076 -15165961 + B1F SINE Alu 4 142 -7 7 1610 26 0 0 0 chr6 134351243 134351269 -15165768 + AT_rich Low_complexity Low_complexity 1 26 0 7 1610 689 231 20 20 chr6 134351282 134351428 -15165609 - RSINE1 SINE B4 -17 148 3 7 1610 180 333 65 54 chr6 134351437 134351605 -15165432 - L3 LINE CR1 -607 3882 3713 7 1610 209 347 70 39 chr6 134351664 134351820 -15165217 - MIRb SINE MIR -8 260 100 7 1610 545 250 138 43 chr6 134351856 134352044 -15164993 + B4A SINE B4 41 246 -46 7 1610 252 286 0 0 chr6 134352052 134352108 -15164929 + polypurine Low_complexity Low_complexity 4 59 0 7 1610 185 332 0 55 chr6 134352108 134352187 -15164850 - MIRc SINE MIR -170 98 23 7 1610 309 250 42 0 chr6 134352584 134352656 -15164381 - ID4_ SINE ID -7 76 2 7 1610 686 216 122 16 chr6 134352802 134353015 -15164022 - MTD LTR MaLR -14 405 171 7 1610 369 234 118 10 chr6 134353030 134353181 -15163856 - MTD LTR MaLR -165 205 22 7 1610 664 231 25 90 chr6 134353401 134353601 -15163436 + Lx8 LINE L1 7134 7320 -153 7 1610 245 284 48 19 chr6 134353774 134353878 -15163159 - LTR37A LTR ERV1 -99 327 221 7 1610 231 242 183 50 chr6 134354203 134354341 -15162696 + MIR3 SINE MIR 8 154 -108 7 1610 1074 107 0 0 chr6 134354366 134354525 -15162512 + (GAA)n Simple_repeat Simple_repeat 2 160 0 7 1610 270 325 158 25 chr6 134354633 134354873 -15162164 - L3 LINE CR1 -2159 2330 2059 7 1610 364 205 25 13 chr6 134355150 134355229 -15161808 + PB1D10 SINE Alu 38 117 0 7 1610 367 253 79 112 chr6 134355160 134355338 -15161699 + MT2B LTR ERVL 89 260 -341 7 1610 510 276 47 101 chr6 134355212 134355231 -15161806 + B4 SINE B4 64 73 -219 7 1610 977 142 7 26 chr6 134355231 134355383 -15161654 + B1_Mur3 SINE Alu 1 149 0 7 1610 295 233 0 0 chr6 134355383 134355456 -15161581 + A-rich Low_complexity Low_complexity 1 73 0 7 1610 388 307 136 39 chr6 134355470 134355788 -15161249 - MER34A1 LTR ERV1 -186 401 1 7 1610 252 0 0 0 chr6 134355881 134355909 -15161128 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 7 1610 243 216 39 0 chr6 134356161 134356212 -15160825 - ID_B1 SINE B4 -2 222 170 7 1610 1023 128 0 0 chr6 134356242 134356390 -15160647 - B1_Mur4 SINE Alu -1 149 2 7 1610 307 320 47 11 chr6 134358145 134358349 -15158688 + L1M2 LINE L1 1637 1841 -5008 7 1610 455 252 99 60 chr6 134358689 134358703 -15158334 + L1_Rod LINE L1 1592 1604 -4243 7 1610 1188 61 0 20 chr6 134358703 134358854 -15158183 + B1_Mus1 SINE Alu 1 148 0 7 1610 455 252 99 60 chr6 134358854 134359173 -15157864 + L1_Rod LINE L1 1605 1937 -3910 7 1610 513 177 0 0 chr6 134359175 134359254 -15157783 - B1_Mur4 SINE Alu -70 80 2 7 1610 297 337 0 0 chr6 134359257 134359352 -15157685 + L1_Rod LINE L1 2284 2378 -3469 7 1610 338 299 94 130 chr6 134359359 134359613 -15157424 + B4A SINE B4 27 271 -21 7 1610 1111 274 162 68 chr6 134359708 134360420 -15156617 + L1M2 LINE L1 3108 3969 -2876 7 1610 191 32 65 0 chr6 134360420 134360451 -15156586 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 7 1610 1111 274 162 68 chr6 134360451 134360641 -15156396 + L1M2 LINE L1 3970 4154 -2691 7 1610 1067 79 0 54 chr6 134360641 134360788 -15156249 + B1_Mus1 SINE Alu 2 140 -8 7 1610 1111 274 162 68 chr6 134360788 134361032 -15156005 + L1M2 LINE L1 4155 4363 -2482 7 1610 314 283 90 80 chr6 134361037 134361437 -15155600 - RMER10A LTR ERVL -27 415 12 7 1610 2805 290 100 69 chr6 134361449 134362041 -15154996 + L1_Mur3 LINE L1 3612 4232 -1648 7 1610 1104 89 0 0 chr6 134362041 134362187 -15154850 + B1_Mus1 SINE Alu 3 148 0 7 1610 2805 290 100 69 chr6 134362187 134362321 -15154716 + L1_Mur3 LINE L1 4233 4380 -1500 7 1610 1424 77 16 0 chr6 134362321 134362503 -15154534 + B2_Mm2 SINE B2 2 186 -9 7 1610 2805 290 100 69 chr6 134362503 134362516 -15154521 + L1_Mur3 LINE L1 4381 4391 -1489 7 1610 210 71 0 0 chr6 134362516 134362544 -15154493 + (TAA)n Simple_repeat Simple_repeat 1 28 0 7 1610 2805 290 100 69 chr6 134362544 134362814 -15154223 + L1_Mur3 LINE L1 4392 4660 -1220 7 1610 1129 66 0 0 chr6 134362814 134362951 -15154086 + B1_Mus2 SINE Alu 2 138 -9 7 1610 2805 290 100 69 chr6 134362951 134363501 -15153536 + L1_Mur3 LINE L1 4661 5220 -660 7 1610 243 0 0 0 chr6 134363501 134363528 -15153509 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1610 2805 290 100 69 chr6 134363528 134364064 -15152973 + L1_Mur3 LINE L1 5221 5775 -105 7 1610 184 237 136 0 chr6 134364438 134364497 -15152540 + L3 LINE CR1 752 818 -3671 7 1610 180 219 0 0 chr6 134364832 134364873 -15152164 + CT-rich Low_complexity Low_complexity 3 43 0 7 1610 924 63 13 95 chr6 134364902 134365060 -15151977 - B1_Mur3 SINE Alu 0 149 5 7 1610 1193 160 0 131 chr6 134366235 134366372 -15150665 - URR1B DNA MER1_type 0 225 103 7 1610 1196 48 7 0 chr6 134366372 134366518 -15150519 + B1_Mus2 SINE Alu 1 147 0 7 1610 1193 160 0 131 chr6 134366518 134366639 -15150398 - URR1B DNA MER1_type -123 102 1 7 1610 212 189 38 0 chr6 134367136 134367189 -15149848 + (CACCC)n Simple_repeat Simple_repeat 5 59 0 7 1610 238 211 19 0 chr6 134367487 134367539 -15149498 - B1_Mur2 SINE Alu -55 94 42 7 1610 308 268 147 37 chr6 134367817 134367980 -15149057 + MER53 DNA hAT 5 185 -8 7 1610 285 29 0 0 chr6 134367980 134368014 -15149023 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 7 1610 1117 225 118 26 chr6 134368082 134368429 -15148608 - MTEb LTR MaLR 0 379 1 7 1610 439 250 0 11 chr6 134368716 134368809 -15148228 - PB1D10 SINE Alu -5 112 21 7 1610 382 217 50 34 chr6 134368813 134368932 -15148105 - L1MC5 LINE L1 -524 7437 7317 7 1610 485 330 98 0 chr6 134368947 134369120 -15147917 - B3 SINE B2 -2 214 25 7 1610 254 203 141 0 chr6 134369296 134369360 -15147677 - B4 SINE B4 -20 272 200 7 1610 2067 128 32 0 chr6 134369396 134369708 -15147329 + MTC LTR MaLR 1 322 -99 7 1610 320 319 62 34 chr6 134369715 134369861 -15147176 - B4 SINE B4 -142 150 1 7 1610 1383 81 5 16 chr6 134369871 134370060 -15146977 - B2_Mm2 SINE B2 -8 187 1 7 1610 315 254 69 0 chr6 134370874 134370961 -15146076 - ID4 SINE ID -57 95 4 7 1610 201 196 0 0 chr6 134371607 134371653 -15145384 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 7 1610 343 239 211 23 chr6 134372478 134372611 -15144426 + RSINE1 SINE B4 2 159 -6 7 1610 219 292 0 0 chr6 134372646 134372694 -15144343 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1610 226 143 0 0 chr6 134372737 134372772 -15144265 + ID_B1 SINE B4 170 204 -20 7 1610 217 179 0 25 chr6 134372740 134372780 -15144257 + PB1D10 SINE Alu 63 101 -16 7 1610 210 200 32 32 chr6 134372852 134372915 -15144122 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 7 1610 1113 70 7 0 chr6 134372915 134373057 -15143980 - B1_Mus1 SINE Alu -1 147 5 7 1610 210 200 32 32 chr6 134373057 134373086 -15143951 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1610 956 174 0 0 chr6 134373096 134373245 -15143792 - B1_Mur4 SINE Alu 0 150 2 7 1610 519 214 0 0 chr6 134374444 134374542 -15142495 + ID_B1 SINE B4 125 222 -2 7 1610 260 286 0 25 chr6 134374558 134374637 -15142400 + GA-rich Low_complexity Low_complexity 3 79 0 7 1610 384 179 0 0 chr6 134374652 134374730 -15142307 + GA-rich Low_complexity Low_complexity 2 79 0 7 1610 432 307 86 14 chr6 134374765 134374904 -15142133 + B1F SINE Alu 1 149 0 7 1610 814 124 7 68 chr6 134374937 134375084 -15141953 + B2_Mm2 SINE B2 2 139 -56 7 1610 1247 59 123 0 chr6 134375969 134376139 -15140898 - B2_Mm2 SINE B2 -4 191 1 7 1610 303 161 0 0 chr6 134376299 134376355 -15140682 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1610 229 265 15 0 chr6 134376367 134376435 -15140602 - B1F SINE Alu -3 146 47 7 1610 282 293 0 26 chr6 134376757 134376834 -15140203 - PB1D10 SINE Alu -25 92 18 7 1610 891 273 31 71 chr6 134377812 134378182 -15138855 - ORR1E LTR MaLR -5 365 2 7 1610 210 71 0 0 chr6 134379180 134379208 -15137829 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 7 1610 558 275 174 5 chr6 134379337 134379556 -15137481 + B4A SINE B4 1 256 -36 7 1610 360 0 0 0 chr6 134379573 134379613 -15137424 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1610 315 211 0 0 chr6 134379673 134379744 -15137293 + ID2 SINE ID 2 72 -11 7 1610 334 176 253 42 chr6 134381288 134381383 -15135654 + PB1D10 SINE Alu 3 117 0 7 1610 419 221 246 0 chr6 134381522 134381644 -15135393 - RSINE1 SINE B4 -13 152 1 7 1610 285 244 146 0 chr6 134382464 134382546 -15134491 + B1F1 SINE Alu 5 98 -51 7 1610 333 0 0 0 chr6 134382556 134382593 -15134444 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1610 279 212 0 83 chr6 134383614 134383686 -15133351 + tRNA-Ala-GCG tRNA tRNA 2 67 -8 7 1610 328 311 86 48 chr6 134383707 134383893 -15133144 + HAL1-3A_ME LINE L1 2284 2476 -382 7 1610 938 266 60 63 chr6 134383916 134384318 -15132719 + L1MB7 LINE L1 5210 5616 -568 7 1610 282 312 12 0 chr6 134384318 134384398 -15132639 + ID4_ SINE ID 1 81 -2 7 1610 938 280 102 74 chr6 134384398 134384634 -15132403 + L1MB7 LINE L1 5617 5841 -343 7 1610 653 241 99 30 chr6 134384634 134384835 -15132202 + B3 SINE B2 2 216 0 7 1610 938 305 90 35 chr6 134384835 134385120 -15131917 + L1MB7 LINE L1 5842 6182 -2 7 1610 719 198 0 8 chr6 134385295 134385657 -15131380 + (TG)n Simple_repeat Simple_repeat 1 358 0 7 1610 229 317 0 48 chr6 134385674 134385737 -15131300 - tRNA-Ala-GCA tRNA tRNA -14 61 2 7 1610 350 241 81 0 chr6 134385801 134385888 -15131149 - PB1D7 SINE Alu 0 120 27 7 1610 362 329 76 14 chr6 134385826 134385971 -15131066 - ID_B1 SINE B4 -55 169 16 7 1610 215 0 0 62 chr6 134385973 134386005 -15131032 + (CCCG)n Simple_repeat Simple_repeat 2 31 0 7 1610 502 231 37 0 chr6 134386200 134386308 -15130729 + PB1D7 SINE Alu 1 112 -8 7 1610 180 240 20 10 chr6 134386315 134386416 -15130621 + GA-rich Low_complexity Low_complexity 4 105 0 7 1610 3355 35 12 2 chr6 134386517 134386916 -15130121 - MTB_Mm LTR MaLR -4 403 1 7 1610 806 250 112 48 chr6 134387041 134387349 -15129688 - ORR1E LTR MaLR -4 375 24 7 1610 506 297 27 55 chr6 134388433 134388673 -15128364 - B4A SINE B4 -27 265 3 7 1610 22 0 0 0 chr6 134388719 134388741 -15128296 + AT_rich Low_complexity Low_complexity 1 22 0 7 1610 332 254 32 7 chr6 134388763 134388857 -15128180 + B1F SINE Alu 20 107 -10 7 1610 410 240 3 23 chr6 134389140 134389236 -15127801 + PB1D10 SINE Alu 19 115 -5 7 1610 182 312 0 24 chr6 134389799 134389881 -15127156 - MER5A DNA MER1_type -67 122 43 7 1610 617 309 33 22 chr6 134390350 134390532 -15126505 + B4A SINE B4 86 269 -23 8 1610 504 0 0 0 chr6 134390533 134390589 -15126448 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1610 288 295 106 81 chr6 134390644 134390917 -15126120 + B4 SINE B4 2 281 -11 8 1610 299 207 195 0 chr6 134391038 134391120 -15125917 + B1_Mus1 SINE Alu 17 114 -6 8 1610 253 300 0 0 chr6 134391246 134391306 -15125731 - Lx8 LINE L1 -139 7334 7275 8 1610 289 302 66 0 chr6 134391364 134391470 -15125567 + L1MB3 LINE L1 5571 5683 -500 8 1610 445 261 95 34 chr6 134391501 134391648 -15125389 - RSINE1 SINE B4 -8 157 2 8 1610 30 0 0 0 chr6 134391659 134391689 -15125348 + AT_rich Low_complexity Low_complexity 1 30 0 8 1610 514 313 102 38 chr6 134391750 134391986 -15125051 - B4A SINE B4 -5 287 37 8 1610 527 279 104 45 chr6 134392492 134392781 -15124256 + L1MB3 LINE L1 5695 6000 -183 8 1610 1635 16 0 54 chr6 134392812 134393016 -15124021 - B2_Mm1a SINE B2 0 193 1 8 1610 481 200 71 18 chr6 134393223 134393335 -15123702 - ID_B1 SINE B4 -11 213 96 8 1610 250 281 76 19 chr6 134393610 134393715 -15123322 + PB1D10 SINE Alu 1 111 -6 8 1610 203 298 0 0 chr6 134393715 134393762 -15123275 + G-rich Low_complexity Low_complexity 4 50 0 8 1610 385 222 48 143 chr6 134393850 134393955 -15123082 + B1_Mm SINE Alu 26 120 0 8 1610 415 293 191 19 chr6 134394231 134394729 -15122308 + L1M5 LINE L1 2336 2942 -3204 8 1610 337 266 48 2 chr6 134394757 134394862 -15122175 + B1_Mm SINE Alu 6 119 -1 8 1610 1428 155 126 12 chr6 134394946 134395272 -15121765 + ORR1D1 LTR MaLR 2 364 -10 8 1610 1016 60 90 0 chr6 134395650 134395784 -15121253 + B1_Mm SINE Alu 1 146 -1 8 1610 303 49 0 0 chr6 134395785 134395826 -15121211 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1610 252 83 32 32 chr6 134397025 134397087 -15119950 + (CAAAAA)n Simple_repeat Simple_repeat 2 63 0 8 1610 21 57 0 0 chr6 134399198 134399233 -15117804 + AT_rich Low_complexity Low_complexity 1 35 0 8 1610 221 266 12 37 chr6 134401442 134401524 -15115513 + BC1_Mm scRNA scRNA 25 104 -48 8 1610 1292 88 0 22 chr6 134403269 134403454 -15113583 + B2_Mm2 SINE B2 1 181 -14 8 1610 287 247 74 21 chr6 134403990 134404077 -15112960 - B4 SINE B4 -5 287 196 8 1610 855 108 13 4 chr6 134404077 134404221 -15112816 + B2_Mm2 SINE B2 3 155 -61 8 1610 201 39 0 0 chr6 134404229 134404255 -15112782 + (CTTA)n Simple_repeat Simple_repeat 1 26 0 8 1610 653 258 116 0 chr6 134404274 134404464 -15112573 - B4 SINE B4 -78 214 3 8 1610 935 25 0 0 chr6 134405232 134405351 -15111686 - B1_Mus2 SINE Alu 0 147 29 8 1610 209 143 23 23 chr6 134406416 134406459 -15110578 + (CATA)n Simple_repeat Simple_repeat 2 44 0 8 1610 239 272 0 36 chr6 134407229 134407313 -15109724 + GA-rich Low_complexity Low_complexity 1 81 0 8 1610 568 250 62 25 chr6 134408193 134408353 -15108684 + B3 SINE B2 3 168 -48 8 1610 890 225 169 35 chr6 134408695 134409008 -15108029 + ORR1D2 LTR MaLR 1 355 -15 8 1610 487 322 92 36 chr6 134410140 134410391 -15106646 - B4A SINE B4 -8 284 20 8 1610 318 294 22 0 chr6 134410688 134410780 -15106257 - PB1D10 SINE Alu -1 116 23 8 1610 25 0 0 0 chr6 134410797 134410822 -15106215 + AT_rich Low_complexity Low_complexity 1 25 0 8 1610 212 179 35 35 chr6 134411561 134411619 -15105418 + CT-rich Low_complexity Low_complexity 2 59 0 8 1610 23 54 0 0 chr6 134411917 134411954 -15105083 + AT_rich Low_complexity Low_complexity 1 37 0 8 1610 235 261 44 33 chr6 134412083 134412174 -15104863 - L1MB3 LINE L1 0 6183 6092 8 1610 469 250 89 64 chr6 134412234 134412469 -15104568 + L1MA8 LINE L1 5783 6023 -268 8 1610 325 281 9 0 chr6 134412838 134412935 -15104102 - AluG_3 SINE Alu -90 221 153 8 1610 1258 41 0 0 chr6 134412975 134413122 -15103915 - B1_Mus2 SINE Alu 0 147 1 8 1610 247 173 77 0 chr6 134413166 134413218 -15103819 + ID4_ SINE ID 26 81 -2 8 1610 497 257 35 7 chr6 134413302 134413443 -15103594 + B1F2 SINE Alu 5 149 0 8 1610 261 312 73 0 chr6 134414059 134414093 -15102944 - B4 SINE B4 -182 110 8 8 1610 330 194 16 0 chr6 134414093 134414155 -15102882 - ID4 SINE ID -13 70 8 8 1610 396 209 0 0 chr6 134415349 134415416 -15101621 - ID4 SINE ID -14 69 3 8 1610 848 166 111 17 chr6 134415447 134415619 -15101418 + B3 SINE B2 2 189 -27 8 1610 237 167 19 0 chr6 134416131 134416185 -15100852 - B1_Mur3 SINE Alu -5 144 90 8 1610 204 159 0 22 chr6 134416429 134416474 -15100563 + T-rich Low_complexity Low_complexity 2 45 0 8 1610 420 275 56 42 chr6 134419181 134419325 -15097712 + MER20 DNA MER1_type 1 146 -73 8 1610 1426 67 0 6 chr6 134419462 134419643 -15097394 - B2_Mm2 SINE B2 -14 181 2 8 1610 23 54 0 0 chr6 134419649 134419686 -15097351 + AT_rich Low_complexity Low_complexity 1 37 0 8 1610 259 273 44 29 chr6 134420390 134420458 -15096579 - MIRb SINE MIR -181 87 13 8 1610 1252 95 21 26 chr6 134421646 134421840 -15095197 - B2_Mm2 SINE B2 -2 193 1 8 1610 21 36 0 0 chr6 134421900 134421928 -15095109 + AT_rich Low_complexity Low_complexity 1 28 0 8 1610 329 194 0 16 chr6 134422009 134422072 -15094965 + ID4_ SINE ID 8 69 -14 8 1610 225 204 23 0 chr6 134422132 134422176 -15094861 + PB1 SINE Alu 21 65 -62 8 1610 207 0 0 0 chr6 134422231 134422254 -15094783 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8 1610 822 282 9 14 chr6 134422257 134422469 -15094568 + B3 SINE B2 1 211 -5 8 1610 221 305 11 9 chr6 134422646 134422733 -15094304 + B1F SINE Alu 33 148 -1 8 1610 584 199 225 0 chr6 134422891 134423042 -15093995 + B3 SINE B2 1 185 -31 8 1610 526 319 84 23 chr6 134423154 134423369 -15093668 - Tigger7 DNA MER2_type -2238 253 26 8 1610 391 223 28 23 chr6 134424072 134424182 -15092855 + PB1 SINE Alu 15 149 0 8 1610 33 56 0 0 chr6 134424429 134424483 -15092554 + AT_rich Low_complexity Low_complexity 1 54 0 8 1610 543 257 58 21 chr6 134424612 134424766 -15092271 + ID_B1 SINE B4 69 224 0 8 1610 210 327 62 0 chr6 134425195 134425308 -15091729 + L2a LINE L2 3084 3203 -223 8 1610 318 276 9 37 chr6 134425359 134425468 -15091569 + L2a LINE L2 3320 3425 -1 8 1610 273 250 71 0 chr6 134425715 134425799 -15091238 - MIRc SINE MIR -113 155 66 8 1610 254 364 67 54 chr6 134425829 134426308 -15090729 - L2a LINE L2 0 3426 2942 8 1610 213 39 0 0 chr6 134426707 134426733 -15090304 + (CCAA)n Simple_repeat Simple_repeat 3 28 0 8 1610 1313 48 79 0 chr6 134427614 134427779 -15089258 - B2_Mm1a SINE B2 -14 179 2 8 1610 697 216 189 22 chr6 134427829 134428014 -15089023 + B3 SINE B2 1 216 0 8 1610 1091 119 14 155 chr6 134428443 134428662 -15088375 - B2_Mm2 SINE B2 -7 188 1 8 1610 1472 170 192 3 chr6 134428720 134429038 -15087999 + ORR1C1 LTR MaLR 1 378 0 8 1610 487 78 0 0 chr6 134431821 134431898 -15085139 - L1_Mus3 LINE L1 0 6638 6562 8 1610 537 16 0 0 chr6 134432077 134432139 -15084898 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 8 1610 7857 27 0 0 chr6 134432232 134433124 -15083913 + L1Md_F2 LINE L1 5676 6567 -15 8 1610 201 167 0 0 chr6 134433132 134433168 -15083869 + A-rich Low_complexity Low_complexity 1 36 0 8 1610 545 245 134 67 chr6 134433369 134433667 -15083370 - MER44A DNA MER2_type 0 339 22 8 1610 420 252 19 0 chr6 134433992 134434099 -15082938 - B1F SINE Alu -39 110 2 8 1610 252 167 0 0 chr6 134434662 134434710 -15082327 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1610 609 284 66 19 chr6 134434766 134434978 -15082059 - B4A SINE B4 -23 269 48 8 1610 753 12 0 0 chr6 134436174 134436260 -15080777 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 8 1610 440 297 55 115 chr6 134437388 134437605 -15079432 + ID_B1 SINE B4 1 204 -20 8 1610 757 255 39 39 chr6 134438041 134438249 -15078788 - B3A SINE B2 -2 214 7 8 1610 1101 21 25 28 chr6 134438591 134438891 -15078146 + (TGGA)n Simple_repeat Simple_repeat 1 298 0 8 1610 322 327 9 0 chr6 134439125 134439235 -15077802 - PB1D10 SINE Alu -6 111 1 8 1610 464 219 115 81 chr6 134439613 134439822 -15077215 - B3 SINE B2 0 216 1 8 1610 196 125 40 40 chr6 134440322 134440372 -15076665 + GA-rich Low_complexity Low_complexity 2 51 0 8 1610 23 0 0 0 chr6 134440580 134440603 -15076434 + AT_rich Low_complexity Low_complexity 1 23 0 8 1610 778 254 200 0 chr6 134440814 134441054 -15075983 + B4 SINE B4 2 289 -3 8 1610 772 229 113 15 chr6 134441114 134441309 -15075728 + B3 SINE B2 1 214 -2 8 1610 23 33 0 0 chr6 134441360 134441390 -15075647 + AT_rich Low_complexity Low_complexity 1 30 0 8 1610 429 81 32 0 chr6 134441972 134442034 -15075003 - ORR1A4 LTR MaLR -8 321 258 8 1610 51 0 0 0 chr6 134442469 134442520 -15074517 + AT_rich Low_complexity Low_complexity 1 51 0 8 1610 1248 174 26 19 chr6 134442773 134443043 -15073994 - ORR1A4 LTR MaLR -57 272 1 8 1610 278 308 75 28 chr6 134443610 134443717 -15073320 - PB1D7 SINE Alu -8 112 1 8 1610 21 57 0 0 chr6 134443811 134443846 -15073191 + AT_rich Low_complexity Low_complexity 1 35 0 8 1610 838 142 181 0 chr6 134445355 134445510 -15071527 + URR1A DNA MER1_type 1 183 -43 8 1610 412 222 0 0 chr6 134445708 134445780 -15071257 + PB1 SINE Alu 37 108 -19 8 1610 520 100 112 0 chr6 134446116 134446196 -15070841 + B1_Mus2 SINE Alu 59 147 0 8 1610 213 65 0 0 chr6 134446201 134446232 -15070805 + (CGAG)n Simple_repeat Simple_repeat 2 32 0 8 1610 270 284 95 22 chr6 134446467 134446604 -15070433 + L1MC4 LINE L1 6732 6878 -1164 8 1610 346 266 103 34 chr6 134446616 134446698 -15070339 + L1M3 LINE L1 5580 5669 -514 9 1610 3382 23 5 5 chr6 134446698 134447094 -15069943 - MTA_Mm LTR MaLR 0 396 1 9 1610 346 266 103 34 chr6 134447094 134447186 -15069851 + L1M3 LINE L1 5670 5766 -417 9 1610 1319 114 0 5 chr6 134447444 134447638 -15069399 - B2_Mm2 SINE B2 -1 194 2 9 1610 1265 237 87 14 chr6 134448239 134448586 -15068451 + ORR1D1 LTR MaLR 3 374 0 9 1610 396 183 0 109 chr6 134448707 134448799 -15068238 - ID4_ SINE ID 0 83 2 9 1610 1988 128 39 12 chr6 134449414 134449747 -15067290 - ORR1A1 LTR MaLR -4 342 1 9 1610 195 240 0 57 chr6 134450266 134450319 -15066718 - MIR3 SINE MIR -9 199 150 9 1610 279 275 51 68 chr6 134452088 134452205 -15064832 + PB1D10 SINE Alu 1 115 -2 9 1610 725 278 69 93 chr6 134453532 134454257 -15062780 + Lx5 LINE L1 6372 7047 -3 9 1610 828 155 18 47 chr6 134454720 134454889 -15062148 + B2_Mm2 SINE B2 32 195 0 9 1610 351 349 28 0 chr6 134455636 134455745 -15061292 + PB1D10 SINE Alu 6 117 0 9 1610 396 0 0 0 chr6 134456399 134456443 -15060594 + (CAAT)n Simple_repeat Simple_repeat 2 45 0 9 1610 3105 17 0 0 chr6 134457983 134458329 -15058708 + ORR1A0 LTR MaLR 1 346 0 9 1610 647 263 79 11 chr6 134458409 134458586 -15058451 + B4 SINE B4 4 192 -100 9 1610 500 121 15 36 chr6 134458601 134458738 -15058299 + GA-rich Low_complexity Low_complexity 2 135 0 9 1610 1056 146 0 0 chr6 134458740 134458918 -15058119 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 9 1610 224 290 29 0 chr6 134458983 134459052 -15057985 + (CATATA)n Simple_repeat Simple_repeat 6 76 0 9 1610 324 0 0 0 chr6 134460267 134460303 -15056734 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1610 522 0 0 0 chr6 134460303 134460360 -15056677 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1610 266 324 176 0 chr6 134461961 134462069 -15054968 + ID_B1 SINE B4 85 211 -13 9 1610 747 253 72 0 chr6 134465031 134465225 -15051812 + B3 SINE B2 9 216 0 9 1610 1685 203 119 32 chr6 134465415 134465878 -15051159 + RLTR12B LTR ERVK 1 503 -25 9 1610 255 146 18 18 chr6 134465920 134465976 -15051061 + L1M4 LINE L1 2225 2280 -3866 9 1610 254 248 0 55 chr6 134466321 134466449 -15050588 + (CACTC)n Simple_repeat Simple_repeat 3 123 0 9 1610 694 229 93 5 chr6 134466723 134466916 -15050121 + B3 SINE B2 1 210 -6 9 1610 276 299 100 58 chr6 134467039 134467143 -15049894 + B1F SINE Alu 13 120 0 9 1610 523 301 127 62 chr6 134467367 134468200 -15048837 + L1M4 LINE L1 3144 4030 -2116 9 1610 319 232 0 0 chr6 134468539 134468595 -15048442 + ID4_ SINE ID 26 81 -2 9 1610 227 293 0 33 chr6 134468610 134468670 -15048367 + RSINE1 SINE B4 2 59 -106 9 1610 297 225 27 27 chr6 134468736 134468809 -15048228 + ID4_ SINE ID 2 74 -9 9 1610 393 277 103 117 chr6 134468946 134469306 -15047731 + L1M4 LINE L1 4968 5322 -824 9 1610 505 264 78 0 chr6 134469340 134469469 -15047568 + RSINE1 SINE B4 10 148 -17 9 1610 245 346 9 36 chr6 134469968 134470079 -15046958 - B4A SINE B4 -168 124 17 9 1610 261 348 64 52 chr6 134470215 134470388 -15046649 + B3A SINE B2 2 176 -22 9 1610 427 283 65 13 chr6 134471208 134471362 -15045675 + RSINE1 SINE B4 4 165 0 9 1610 544 271 52 35 chr6 134472322 134472478 -15044559 - ID_B1 SINE B4 -51 241 85 9 1610 333 47 0 0 chr6 134472605 134472648 -15044389 + (TCC)n Simple_repeat Simple_repeat 3 45 0 9 1610 378 61 0 0 chr6 134472648 134472697 -15044340 + (CCA)n Simple_repeat Simple_repeat 3 51 0 9 1610 659 279 76 28 chr6 134473096 134473149 -15043888 + L1MB8 LINE L1 5540 5593 -585 9 1610 252 0 0 0 chr6 134473149 134473177 -15043860 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1610 659 279 76 28 chr6 134473177 134473558 -15043479 + L1MB8 LINE L1 5594 5994 -184 9 1610 804 208 53 27 chr6 134474559 134474747 -15042290 - B3A SINE B2 -2 196 4 9 1610 3560 18 0 0 chr6 134475429 134475825 -15041212 - MTA_Mm LTR MaLR 0 396 1 9 1610 250 333 17 9 chr6 134476427 134476542 -15040495 - Lx7 LINE L1 -596 7100 6985 9 1610 251 327 70 88 chr6 134476954 134477125 -15039912 + MLT1N2 LTR MaLR 29 196 -366 9 1610 217 300 150 0 chr6 134477127 134477227 -15039810 + B1F1 SINE Alu 9 123 -26 9 1610 230 250 56 74 chr6 134478109 134478217 -15038820 - MER5B DNA MER1_type -16 162 57 9 1610 200 194 0 0 chr6 134478313 134478349 -15038688 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1610 331 235 51 0 chr6 134478394 134478492 -15038545 - L1_Rod LINE L1 -19 5828 5726 9 1610 354 287 151 77 chr6 134478504 134478776 -15038261 + B4A SINE B4 1 292 0 9 1610 726 228 43 19 chr6 134479471 134479681 -15037356 + B3 SINE B2 1 215 -1 9 1610 240 299 129 40 chr6 134479753 134479854 -15037183 + PB1D10 SINE Alu 1 110 -7 9 1611 570 201 39 39 chr6 134480000 134480153 -15036884 + B3 SINE B2 16 176 -19 9 1611 1799 292 48 32 chr6 134480158 134480901 -15036136 + Lx8 LINE L1 6020 6774 -699 9 1611 377 282 160 6 chr6 134481098 134481273 -15035764 + MER67A LTR ERV1 342 543 0 9 1611 624 240 25 66 chr6 134481545 134481741 -15035296 + MER58C DNA MER1_type 27 214 -1 9 1611 954 158 165 21 chr6 134482548 134482742 -15034295 - URR1A DNA MER1_type 0 226 5 9 1611 609 207 100 0 chr6 134482889 134483029 -15034008 + B3 SINE B2 61 214 -2 9 1611 1218 54 0 0 chr6 134483500 134483647 -15033390 + B1_Mus2 SINE Alu 1 147 0 9 1611 307 258 151 0 chr6 134485120 134485213 -15031824 + PB1D7 SINE Alu 1 107 -13 9 1611 254 269 36 71 chr6 134485355 134485439 -15031598 + ID4_ SINE ID 3 83 0 9 1611 381 194 87 10 chr6 134485595 134485699 -15031338 + B1_Mus2 SINE Alu 35 146 -1 9 1611 22 0 0 0 chr6 134486022 134486044 -15030993 + AT_rich Low_complexity Low_complexity 1 22 0 9 1611 336 54 89 0 chr6 134486085 134486141 -15030896 + B2_Mm1a SINE B2 127 187 -6 9 1611 230 73 24 0 chr6 134486675 134486716 -15030321 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 9 1611 477 241 28 9 chr6 134486849 134486958 -15030079 - B1F SINE Alu -11 138 28 9 1611 1143 81 0 0 chr6 134487003 134487151 -15029886 + B1_Mus1 SINE Alu 1 148 0 9 1611 194 262 74 12 chr6 134487159 134487240 -15029797 - L2a LINE L2 -1 3425 3340 9 1611 454 250 26 18 chr6 134487305 134487419 -15029618 - B1F SINE Alu -2 147 33 9 1611 28 61 0 0 chr6 134488230 134488279 -15028758 + AT_rich Low_complexity Low_complexity 1 49 0 9 1611 412 309 0 20 chr6 134488723 134488822 -15028215 + PB1D10 SINE Alu 5 101 -16 9 1611 876 180 208 0 chr6 134489082 134489260 -15027777 + B3 SINE B2 2 216 0 9 1611 270 224 132 116 chr6 134489277 134489398 -15027639 + RSINE1 SINE B4 2 124 -41 9 1611 217 68 22 22 chr6 134489538 134489583 -15027454 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 9 1611 25 65 0 0 chr6 134490791 134490837 -15026200 + AT_rich Low_complexity Low_complexity 1 46 0 9 1611 186 103 0 0 chr6 134490994 134491023 -15026014 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 9 1611 494 280 95 14 chr6 134491274 134491484 -15025553 - L1P5 LINE L1 -395 5761 5535 9 1611 519 235 144 27 chr6 134492183 134492371 -15024666 + B3 SINE B2 2 211 -5 9 1611 259 273 25 38 chr6 134492571 134492651 -15024386 - ID4 SINE ID -4 79 1 9 1611 230 222 0 0 chr6 134492688 134492742 -15024295 + L1M5 LINE L1 5614 5667 -507 9 1611 320 311 50 16 chr6 134492752 134492873 -15024164 + L1M5 LINE L1 5647 5771 -408 9 1611 535 304 22 0 chr6 134492905 134493043 -15023994 + ID_B1 SINE B4 84 224 0 9 1611 468 0 0 0 chr6 134493869 134493921 -15023116 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1611 778 219 31 6 chr6 134493921 134494082 -15022955 - B3 SINE B2 -34 182 18 9 1611 597 282 86 0 chr6 134495174 134495337 -15021700 + 7SK RNA RNA 71 247 -84 9 1611 233 320 30 60 chr6 134495435 134495450 -15021587 + MT2B LTR ERVL 155 219 -382 9 1611 415 229 94 9 chr6 134495450 134495556 -15021481 + B1_Mur2 SINE Alu 3 117 -32 9 1611 233 320 30 60 chr6 134495556 134495568 -15021469 + MT2B LTR ERVL 220 283 -318 9 1611 472 234 122 79 chr6 134496277 134496486 -15020551 - B4A SINE B4 -73 219 2 9 1611 351 105 0 0 chr6 134496662 134496719 -15020318 + (TA)n Simple_repeat Simple_repeat 2 58 0 9 1611 2091 258 122 101 chr6 134497155 134497751 -15019286 - RMER12 LTR ERVK 0 1322 667 9 1611 1623 27 0 0 chr6 134497751 134497939 -15019098 - B2_Mm1a SINE B2 -4 189 2 9 1611 2091 254 133 92 chr6 134497939 134498578 -15018459 - RMER12 LTR ERVK -656 666 2 9 1611 1067 36 0 28 chr6 134498620 134498763 -15018274 + B1_Mus2 SINE Alu 9 147 0 9 1611 447 262 125 68 chr6 134498622 134498798 -15018239 + MT2B LTR ERVL 175 360 -241 9 1611 234 0 0 0 chr6 134498884 134498910 -15018127 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1611 227 333 12 0 chr6 134499220 134499301 -15017736 + ID4 SINE ID 2 83 0 9 1611 558 182 165 8 chr6 134499354 134499481 -15017556 + RSINE1 SINE B4 4 150 -15 9 1611 201 74 0 0 chr6 134499482 134499509 -15017528 + (CA)n Simple_repeat Simple_repeat 1 27 0 9 1611 930 43 0 0 chr6 134499535 134499650 -15017387 + (GGGGA)n Simple_repeat Simple_repeat 4 118 0 9 1611 238 246 14 58 chr6 134499675 134499744 -15017293 + ID4 SINE ID 16 81 -2 9 1611 907 211 14 46 chr6 134500439 134500658 -15016379 - B3 SINE B2 -4 212 1 1 1611 441 0 0 0 chr6 134501295 134501344 -15015693 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1611 387 241 0 12 chr6 134501345 134501425 -15015612 + RSINE1 SINE B4 6 84 -81 3 1611 336 48 0 0 chr6 134501452 134501494 -15015543 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1611 252 0 0 0 chr6 134501494 134501522 -15015515 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 5 1611 676 202 19 98 chr6 134501616 134501830 -15015207 + MER31-int LTR ERV1 1114 1310 -3626 6 1611 235 324 0 14 chr6 134501843 134501912 -15015125 + B4A SINE B4 84 151 -141 7 1611 287 251 143 0 chr6 134501859 134501941 -15015096 + B1F SINE Alu 14 105 -44 8 1611 5180 45 11 11 chr6 134502224 134502861 -15014176 + L1Md_F2 LINE L1 5933 6569 -13 9 1611 780 297 69 36 chr6 134503001 134503277 -15013760 + B4A SINE B4 1 285 -7 1 1611 245 261 188 0 chr6 134503553 134503622 -15013415 + ID4 SINE ID 2 83 0 1 1611 322 269 86 20 chr6 134503871 134504023 -15013014 + MER31-int LTR ERV1 2194 2355 -2581 6 1611 393 256 201 30 chr6 134505379 134505548 -15011489 + MER31-int LTR ERV1 3330 3527 -1409 6 1611 468 81 0 0 chr6 134505560 134505634 -15011403 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1611 643 320 52 29 chr6 134505838 134506185 -15010852 + MER31-int LTR ERV1 3830 4184 -752 6 1611 313 333 93 33 chr6 134506269 134506539 -15010498 + MER92A LTR ERV1 29 314 -98 1 1611 425 262 58 0 chr6 134506688 134506791 -15010246 + PB1 SINE Alu 5 113 -14 1 1611 238 298 18 0 chr6 134506834 134506891 -15010146 + PB1D10 SINE Alu 47 104 -13 1 1611 646 265 161 21 chr6 134507115 134507358 -15009679 + B4A SINE B4 2 278 -14 1 1611 468 0 0 0 chr6 134507358 134507410 -15009627 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1611 252 0 0 0 chr6 134507410 134507437 -15009600 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1611 296 283 57 0 chr6 134507573 134507679 -15009358 + PB1D7 SINE Alu 2 113 -7 1 1611 731 274 146 9 chr6 134507757 134508085 -15008952 + L1MB7 LINE L1 5782 6154 -30 2 1611 942 96 65 111 chr6 134508158 134508282 -15008755 - B2_Mm2 SINE B2 -4 191 70 2 1611 2112 38 19 7 chr6 134508282 134508551 -15008486 + L1Md_F3 LINE L1 6313 6584 0 2 1611 942 96 65 111 chr6 134508551 134508625 -15008412 - B2_Mm2 SINE B2 -126 69 2 2 1611 229 246 35 0 chr6 134508677 134508734 -15008303 + B4A SINE B4 86 144 -148 2 1611 225 0 0 0 chr6 134508754 134508779 -15008258 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1611 189 147 0 0 chr6 134509148 134509182 -15007855 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1611 774 127 16 0 chr6 134509192 134509318 -15007719 - B1_Mur4 SINE Alu 0 150 23 2 1611 272 235 114 29 chr6 134509849 134509954 -15007083 - PB1D10 SINE Alu -2 115 2 2 1611 300 277 19 96 chr6 134510288 134510390 -15006647 + B4 SINE B4 2 95 -197 2 1611 926 72 0 0 chr6 134510390 134510515 -15006522 + B2_Mm2 SINE B2 1 125 -70 2 1611 281 348 23 64 chr6 134510515 134510562 -15006475 + B4A SINE B4 1 165 -127 3 1611 223 210 0 75 chr6 134510649 134510716 -15006321 + B4A SINE B4 80 141 -151 2 1611 428 248 18 9 chr6 134510665 134510775 -15006262 + PB1D7 SINE Alu 7 117 -3 3 1611 268 283 26 26 chr6 134510962 134511078 -15005959 - ID_B1 SINE B4 0 224 109 3 1611 920 112 155 0 chr6 134511836 134511997 -15005040 + B2_Mm1t SINE B2 1 186 -7 3 1611 420 267 202 10 chr6 134511997 134512190 -15004847 + B4 SINE B4 14 243 -49 3 1611 436 236 64 0 chr6 134512274 134512384 -15004653 + PB1D10 SINE Alu 1 117 0 3 1611 1752 238 65 46 chr6 134512808 134513331 -15003706 + Lx8 LINE L1 6941 7473 0 3 1611 1226 47 0 0 chr6 134513374 134513522 -15003515 + B1_Mus1 SINE Alu 1 148 0 3 1611 261 261 250 0 chr6 134513648 134513740 -15003297 - B1F SINE Alu -34 115 1 3 1611 477 216 21 0 chr6 134513768 134513865 -15003172 + B3A SINE B2 25 123 -75 3 1611 34 0 0 0 chr6 134513897 134513931 -15003106 + AT_rich Low_complexity Low_complexity 1 34 0 4 1611 23 54 0 0 chr6 134514280 134514317 -15002720 + AT_rich Low_complexity Low_complexity 1 37 0 4 1611 372 254 0 60 chr6 134514327 134514444 -15002593 + PB1D10 SINE Alu 1 110 -7 4 1611 268 283 103 9 chr6 134514458 134514565 -15002472 - MIRc SINE MIR -39 229 113 4 1611 40 59 0 0 chr6 134516475 134516543 -15000494 + GC_rich Low_complexity Low_complexity 1 68 0 4 1611 183 80 0 0 chr6 134516638 134516663 -15000374 + (CCTCG)n Simple_repeat Simple_repeat 2 26 0 4 1611 28 95 0 0 chr6 134516728 134516812 -15000225 + GC_rich Low_complexity Low_complexity 1 84 0 4 1611 25 65 0 0 chr6 134517061 134517107 -14999930 + GC_rich Low_complexity Low_complexity 1 46 0 4 1611 270 0 0 0 chr6 134517662 134517692 -14999345 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1611 628 238 6 64 chr6 134518446 134518617 -14998420 + RSINE1 SINE B4 4 164 -1 4 1611 619 250 7 7 chr6 134519436 134519573 -14997464 - ID_B1 SINE B4 -10 214 78 5 1611 263 271 75 90 chr6 134519821 134519930 -14997107 + B1F2 SINE Alu 4 110 -39 5 1611 344 253 32 32 chr6 134519930 134520024 -14997013 + PB1D10 SINE Alu 1 94 -23 5 1611 303 175 125 0 chr6 134520101 134520181 -14996856 - HAL1-3A_ME LINE L1 -793 2065 1976 5 1611 619 180 0 10 chr6 134520184 134520605 -14996432 + (TG)n Simple_repeat Simple_repeat 1 416 0 5 1611 287 336 7 79 chr6 134520606 134520758 -14996279 - B3 SINE B2 -15 201 61 5 1611 225 339 0 16 chr6 134521035 134521098 -14995939 + ZP3AR Satellite Satellite 24 85 -127 5 1611 325 247 0 38 chr6 134521056 134521136 -14995901 + ID4 SINE ID 2 78 -5 5 1611 231 36 0 0 chr6 134521136 134521164 -14995873 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 5 1611 189 132 0 0 chr6 134521195 134521233 -14995804 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1611 4214 123 27 21 chr6 134521361 134521908 -14995129 + RMER6A LTR ERVK 3 561 -195 6 1611 3530 99 74 22 chr6 134521908 134522447 -14994590 - RMER2 LTR ERV1 0 567 1 6 1611 4214 123 27 21 chr6 134522447 134522644 -14994393 + RMER6A LTR ERVK 562 751 -5 6 1611 1165 309 69 48 chr6 134522739 134523433 -14993604 + Lx8 LINE L1 6763 7471 -2 6 1611 300 262 45 73 chr6 134523433 134523463 -14993574 - PB1D10 SINE Alu -8 140 37 6 1611 309 245 82 0 chr6 134523463 134523561 -14993476 - ID_B1 SINE B4 -28 196 91 6 1611 519 17 0 0 chr6 134523664 134523724 -14993313 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1611 996 206 14 5 chr6 134523789 134524004 -14993033 - MTB_Mm LTR MaLR 0 407 191 6 1611 201 94 0 0 chr6 134524371 134524403 -14992634 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 6 1611 495 188 17 17 chr6 134524410 134524589 -14992448 + GA-rich Low_complexity Low_complexity 2 180 0 6 1611 685 319 58 108 chr6 134524703 134525036 -14992001 + L1M4 LINE L1 305 620 -5922 6 1611 553 250 5 118 chr6 134525036 134525222 -14991815 + RSINE1 SINE B4 1 165 0 7 1611 685 319 58 108 chr6 134525222 134525242 -14991795 + L1M4 LINE L1 621 623 -5919 6 1611 504 0 0 0 chr6 134525242 134525298 -14991739 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 7 1611 685 319 58 108 chr6 134525298 134525638 -14991399 + L1M4 LINE L1 624 964 -5578 6 1611 224 255 0 0 chr6 134525778 134525825 -14991212 + GA-rich Low_complexity Low_complexity 3 49 0 7 1611 371 259 67 25 chr6 134525846 134525965 -14991072 + RSINE1 SINE B4 4 127 -38 7 1611 294 152 0 0 chr6 134525977 134526036 -14991001 + CT-rich Low_complexity Low_complexity 2 60 0 7 1611 186 43 0 0 chr6 134526065 134526088 -14990949 + (CATG)n Simple_repeat Simple_repeat 1 23 0 7 1611 506 16 16 0 chr6 134526253 134526316 -14990721 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 1611 275 341 151 0 chr6 134526418 134526544 -14990493 + MLT1F LTR MaLR 24 168 -380 7 1611 452 18 18 0 chr6 134526936 134526993 -14990044 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1611 245 125 30 30 chr6 134527030 134527096 -14989941 + (CAAA)n Simple_repeat Simple_repeat 2 67 0 7 1611 303 252 37 55 chr6 134527211 134527320 -14989717 + B1F2 SINE Alu 23 129 -20 8 1611 768 11 0 0 chr6 134527342 134527431 -14989606 + (CAGAGA)n Simple_repeat Simple_repeat 6 94 0 8 1611 363 300 167 37 chr6 134527506 134527776 -14989261 - ORR1E LTR MaLR -1 358 54 8 1611 186 133 0 0 chr6 134528442 134528472 -14988565 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1611 299 280 73 25 chr6 134528800 134528940 -14988097 + B1F SINE Alu 1 146 -3 8 1611 335 107 18 0 chr6 134529472 134529528 -14987509 - RLTR25A LTR ERVK 0 1103 1047 8 1611 4916 142 34 9 chr6 134529544 134530407 -14986630 - RLTR25A LTR ERVK -215 888 5 8 1611 640 295 29 10 chr6 134530536 134530745 -14986292 + RMER15 LTR ERVL 358 570 -5 8 1611 310 281 180 55 chr6 134530942 134531070 -14985967 + ID_B1 SINE B4 81 224 0 8 1611 304 253 21 42 chr6 134531081 134531166 -14985871 + RSINE1 SINE B4 3 88 -77 8 1611 603 0 0 0 chr6 134531166 134531233 -14985804 + (GA)n Simple_repeat Simple_repeat 2 68 0 8 1611 617 250 135 5 chr6 134531361 134531546 -14985491 - ID_B1 SINE B4 -4 220 12 9 1611 335 255 25 58 chr6 134531718 134531848 -14985189 - PB1 SINE Alu -2 125 1 9 1611 226 217 29 0 chr6 134531889 134531958 -14985079 + (TG)n Simple_repeat Simple_repeat 2 72 0 9 1611 334 243 125 9 chr6 134532345 134532457 -14984580 - MIRb SINE MIR -31 237 113 9 1611 227 260 143 0 chr6 134532771 134532848 -14984189 - MER81 DNA AcHobo -4 110 23 9 1611 1561 276 25 39 chr6 134533523 134533592 -14983445 + RCHARR1 DNA MER1_type 10 75 -899 9 1611 1243 21 0 14 chr6 134533592 134533739 -14983298 + B1_Mm SINE Alu 1 145 -2 9 1611 1561 270 24 34 chr6 134533739 134534329 -14982708 + RCHARR1 DNA MER1_type 76 974 0 9 1611 575 254 28 21 chr6 134534704 134534849 -14982188 + RSINE1 SINE B4 3 148 -17 9 1611 459 261 9 26 chr6 134534917 134535031 -14982006 + PB1D10 SINE Alu 6 117 0 9 1611 308 243 12 86 chr6 134535085 134535134 -14981903 - ID4_ SINE ID -7 76 31 9 1611 1649 186 118 3 chr6 134535134 134535473 -14981564 + ORR1C1 LTR MaLR 1 378 0 1 1611 308 243 12 86 chr6 134535473 134535504 -14981533 - ID4_ SINE ID -53 30 2 9 1611 367 261 0 52 chr6 134535637 134535734 -14981303 - RSINE1 SINE B4 -6 159 68 1 1611 1656 166 78 15 chr6 134535737 134536068 -14980969 - MTD LTR MaLR 0 419 68 1 1611 339 243 71 9 chr6 134536301 134536413 -14980624 - PB1D9 SINE Alu -1 119 1 1 1611 823 221 0 29 chr6 134536413 134536503 -14980534 - B4 SINE B4 -207 85 1 1 1611 325 271 65 9 chr6 134536541 134536649 -14980388 - PB1D10 SINE Alu -35 114 1 1 1611 295 229 62 78 chr6 134536869 134536997 -14980040 - MER5A DNA MER1_type -3 186 61 1 1611 489 244 50 0 chr6 134537206 134537325 -14979712 - ID_B1 SINE B4 -13 211 87 1 1611 549 0 0 0 chr6 134537392 134537453 -14979584 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1611 251 190 0 17 chr6 134537478 134537537 -14979500 + CT-rich Low_complexity Low_complexity 3 60 0 1 1611 801 255 68 68 chr6 134537831 134538155 -14978882 + ORR1E LTR MaLR 1 324 -35 1 1611 339 342 98 20 chr6 134538185 134538388 -14978649 + MLT1L LTR MaLR 49 267 -343 1 1611 222 233 0 0 chr6 134538388 134538431 -14978606 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1611 305 260 56 106 chr6 134538435 134538530 -14978507 - ID_B1 SINE B4 0 224 137 1 1611 213 65 0 0 chr6 134538530 134538561 -14978476 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1611 692 207 22 0 chr6 134538561 134538696 -14978341 - B1_Mur1 SINE Alu -10 139 2 1 1611 305 260 56 106 chr6 134538696 134538741 -14978296 - ID_B1 SINE B4 -88 136 91 1 1611 489 115 0 0 chr6 134538751 134538829 -14978208 + (TCCC)n Simple_repeat Simple_repeat 4 81 0 1 1611 338 261 0 0 chr6 134538829 134538898 -14978139 - ID4_ SINE ID -13 70 2 1 1611 250 140 60 0 chr6 134538980 134539030 -14978007 + PB1 SINE Alu 52 104 -23 1 1611 861 270 83 51 chr6 134539050 134539386 -14977651 - ORR1E LTR MaLR -11 348 2 1 1611 360 272 0 0 chr6 134539444 134539525 -14977512 - MER5A DNA MER1_type -106 83 9 1 1611 2869 229 108 67 chr6 134539538 134540474 -14976563 - RMER1C Other Other 0 1342 369 1 1611 330 138 0 0 chr6 134540938 134540996 -14976041 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 1 1611 745 191 8 0 chr6 134541021 134541152 -14975885 + RSINE1 SINE B4 3 134 -31 1 1611 580 178 143 8 chr6 134541245 134541364 -14975673 + B1_Mur4 SINE Alu 1 135 -15 1 1611 947 123 7 0 chr6 134541381 134541535 -14975502 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 1 1611 2163 135 60 6 chr6 134541555 134541921 -14975116 - ORR1B1 LTR MaLR -8 386 1 1 1611 307 341 134 0 chr6 134541922 134542086 -14974951 + B3A SINE B2 7 192 -6 1 1611 816 240 75 5 chr6 134542109 134542256 -14974781 + B3 SINE B2 2 162 -54 1 1611 387 0 0 0 chr6 134542256 134542299 -14974738 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1611 816 240 75 5 chr6 134542299 134542352 -14974685 + B3 SINE B2 163 216 0 1 1611 432 0 0 0 chr6 134542827 134542875 -14974162 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1611 552 224 82 87 chr6 134542998 134543194 -14973843 + B3A SINE B2 2 196 -2 1 1611 284 272 71 8 chr6 134543216 134543342 -14973695 - RLTR12B LTR ERVK -28 500 367 1 1611 219 287 86 38 chr6 134543475 134543580 -14973457 + B1F SINE Alu 7 116 -33 1 1611 609 201 25 69 chr6 134543592 134543752 -14973285 + MTE2b LTR MaLR 1 153 -226 1 1611 536 205 17 0 chr6 134543836 134543953 -14973084 + ID_B1 SINE B4 106 224 0 1 1611 408 239 46 0 chr6 134544072 134544181 -14972856 + PB1D10 SINE Alu 2 115 -2 1 1611 1425 74 11 0 chr6 134544239 134544429 -14972608 + B2_Mm1t SINE B2 2 193 0 1 1611 1111 34 0 92 chr6 134544443 134544606 -14972431 + B1_Mus1 SINE Alu 1 148 0 1 1611 333 211 14 0 chr6 134544658 134544729 -14972308 + RSINE1 SINE B4 32 103 -62 1 1611 255 350 26 80 chr6 134544843 134545107 -14971930 - LTR33 LTR ERVL -265 250 1 1 1611 295 317 117 19 chr6 134545204 134545307 -14971730 - ID_B1 SINE B4 -78 146 34 1 1611 440 272 149 19 chr6 134545485 134545646 -14971391 - Lx8 LINE L1 -329 7144 6963 1 1611 1292 228 107 56 chr6 134545683 134546077 -14970960 - Lx8 LINE L1 -721 6752 6339 1 1611 207 0 0 0 chr6 134546248 134546271 -14970766 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1611 361 141 40 14 chr6 134546318 134546399 -14970638 - ORR1D1 LTR MaLR -8 366 270 1 1611 270 0 0 0 chr6 134546451 134546481 -14970556 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1611 1209 68 0 0 chr6 134546499 134546646 -14970391 + B1_Mus1 SINE Alu 2 148 0 1 1611 198 0 0 0 chr6 134546646 134546668 -14970369 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1611 594 149 0 53 chr6 134546672 134546785 -14970252 + B1_Mur3 SINE Alu 42 148 -1 1 1611 1253 88 60 16 chr6 134546867 134547052 -14969985 - B2_Mm2 SINE B2 -2 193 1 1 1611 350 295 9 28 chr6 134547131 134547239 -14969798 + RSINE1 SINE B4 32 137 -28 1 1611 408 20 0 0 chr6 134547551 134547600 -14969437 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1611 281 255 31 41 chr6 134547612 134547710 -14969327 - L1MB3 LINE L1 -1 6182 6086 1 1611 360 217 109 0 chr6 134547840 134547932 -14969105 - PB1 SINE Alu -2 125 24 1 1611 725 208 142 0 chr6 134548036 134548219 -14968818 + MLT2B1 LTR ERVL 2 210 -310 1 1611 552 168 0 0 chr6 134548219 134548344 -14968693 + (CA)n Simple_repeat Simple_repeat 1 125 0 1 1611 310 299 123 28 chr6 134548370 134548549 -14968488 + MLT2B1 LTR ERVL 337 532 -35 1 1611 441 175 0 0 chr6 134548567 134548647 -14968390 - ID_B1 SINE B4 0 224 145 1 1611 2583 82 75 23 chr6 134548941 134549328 -14967709 - MTB_Mm LTR MaLR 0 407 1 1 1611 637 241 13 27 chr6 134549424 134549573 -14967464 + ID_B1 SINE B4 78 224 0 1 1611 740 179 61 22 chr6 134549635 134549789 -14967248 + B3 SINE B2 1 156 -37 1 1611 398 90 30 0 chr6 134549789 134549856 -14967181 + (CATA)n Simple_repeat Simple_repeat 2 70 0 1 1611 308 272 96 85 chr6 134549856 134549878 -14967159 + B2_Mm1t SINE B2 157 179 -14 1 1611 440 141 25 13 chr6 134549886 134549965 -14967072 + ID_B1 SINE B4 145 224 0 1 1611 560 115 9 0 chr6 134550596 134550709 -14966328 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 1 1611 520 197 163 8 chr6 134550710 134550833 -14966204 - B1_Mur4 SINE Alu -8 142 1 1 1611 395 212 12 24 chr6 134550865 134550947 -14966090 - ID4_ SINE ID -1 82 2 1 1611 198 224 0 0 chr6 134550952 134551001 -14966036 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1611 652 290 8 101 chr6 134551188 134551426 -14965611 + B4A SINE B4 1 216 -76 1 1611 418 208 121 81 chr6 134551475 134551648 -14965389 - MTE2a LTR MaLR -28 351 172 1 1611 299 244 58 11 chr6 134551634 134551721 -14965316 - B1_Mur3 SINE Alu -49 100 10 1 1611 230 206 13 76 chr6 134551837 134551916 -14965121 + MER89 LTR ERV1 2 75 -484 1 1611 494 295 48 79 chr6 134551953 134552244 -14964793 + MER89 LTR ERV1 276 557 -2 1 1611 214 167 0 0 chr6 134552371 134552413 -14964624 + C-rich Low_complexity Low_complexity 1 42 0 1 1611 197 281 0 50 chr6 134552415 134552475 -14964562 - MIR SINE MIR -117 145 89 1 1611 1143 101 0 0 chr6 134552941 134553109 -14963928 + (TCCCC)n Simple_repeat Simple_repeat 4 171 0 1 1611 448 128 33 25 chr6 134553110 134553230 -14963807 + CT-rich Low_complexity Low_complexity 4 124 0 1 1611 270 0 0 0 chr6 134553364 134553394 -14963643 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1611 398 240 0 20 chr6 134553637 134553739 -14963298 + ID_B1 SINE B4 125 224 0 1 1611 228 314 9 64 chr6 134553859 134553873 -14963164 - B1_Mur4 SINE Alu -21 129 27 1 1611 499 211 0 0 chr6 134553873 134553968 -14963069 - B4 SINE B4 -87 205 111 1 1611 1356 101 16 0 chr6 134553979 134554167 -14962870 - B2_Mm2 SINE B2 -2 193 3 1 1611 192 77 0 0 chr6 134554510 134554536 -14962501 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 1 1611 246 338 14 0 chr6 134554544 134554618 -14962419 - ID4_ SINE ID 0 83 9 1 1611 374 206 0 27 chr6 134554643 134554718 -14962319 - ID4 SINE ID -9 74 2 1 1611 358 148 49 0 chr6 134555110 134555171 -14961866 + PB1D7 SINE Alu 38 101 -19 1 1611 396 171 24 0 chr6 134555438 134555520 -14961517 + MTC LTR MaLR 2 85 -336 1 1611 501 301 0 0 chr6 134556120 134556253 -14960784 + ID_B1 SINE B4 85 217 -7 1 1611 457 257 28 62 chr6 134556405 134556550 -14960487 + B1F1 SINE Alu 10 149 0 1 1611 804 268 10 10 chr6 134556610 134556810 -14960227 + ID_B1 SINE B4 20 219 -5 1 1611 262 243 115 10 chr6 134556863 134556967 -14960070 + PB1D7 SINE Alu 1 115 -5 1 1611 182 174 22 0 chr6 134557390 134557436 -14959601 + GA-rich Low_complexity Low_complexity 4 50 0 1 1611 639 235 86 43 chr6 134557550 134557737 -14959300 - B3 SINE B2 -16 200 6 1 1611 766 202 141 39 chr6 134557762 134557968 -14959069 + B4A SINE B4 2 228 -64 1 1611 757 186 29 0 chr6 134557971 134558111 -14958926 + B1_Mur4 SINE Alu 1 144 -6 1 1611 434 279 169 27 chr6 134558160 134558401 -14958636 + MTD LTR MaLR 8 310 -90 1 1611 649 265 0 0 chr6 134558922 134559054 -14957983 + ID_B1 SINE B4 92 223 -1 1 1611 27 0 0 0 chr6 134559301 134559328 -14957709 + AT_rich Low_complexity Low_complexity 1 27 0 1 1611 249 283 43 11 chr6 134559606 134559699 -14957338 + BC1_Mm scRNA scRNA 2 97 -55 1 1611 482 223 48 0 chr6 134559716 134559819 -14957218 + PB1D10 SINE Alu 3 110 -7 1 1611 285 146 0 0 chr6 134559825 134559873 -14957164 + (AGGGGG)n Simple_repeat Simple_repeat 5 52 0 1 1611 1923 211 57 30 chr6 134560971 134561376 -14955661 + MTD LTR MaLR 2 417 -2 1 1611 513 0 0 0 chr6 134561381 134561438 -14955599 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1611 1191 90 56 11 chr6 134561438 134561618 -14955419 + B2_Mm2 SINE B2 8 195 0 1 1611 348 24 0 0 chr6 134561651 134561692 -14955345 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1611 1127 194 37 0 chr6 134562681 134562897 -14954140 + ID_B1 SINE B4 1 224 0 2 1611 772 188 0 0 chr6 134563181 134563309 -14953728 - RSINE1 SINE B4 -35 130 3 2 1611 207 88 0 0 chr6 134563352 134563386 -14953651 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1611 981 26 0 0 chr6 134563386 134563502 -14953535 - B1_Mus1 SINE Alu -9 139 24 2 1611 339 309 0 0 chr6 134563628 134563709 -14953328 + MER58B DNA MER1_type 27 107 -234 2 1611 551 213 79 32 chr6 134563982 134564108 -14952929 + ID_B1 SINE B4 84 215 -9 2 1611 199 242 0 57 chr6 134564191 134564296 -14952741 + (TATATG)n Simple_repeat Simple_repeat 3 101 0 2 1611 525 182 96 108 chr6 134564461 134564627 -14952410 + RSINE1 SINE B4 2 165 0 2 1611 258 32 0 0 chr6 134565019 134565050 -14951987 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1611 381 250 117 39 chr6 134565714 134565868 -14951169 - LTR86A2 LTR ERVL -289 219 54 2 1611 227 250 0 126 chr6 134566225 134566312 -14950725 + MT2B LTR ERVL 175 250 -351 2 1611 235 308 10 99 chr6 134566309 134566410 -14950627 + RSINE1 SINE B4 43 134 -31 2 1611 426 39 0 0 chr6 134566421 134566473 -14950564 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1611 217 301 76 61 chr6 134566907 134567038 -14949999 + L2a LINE L2 3294 3426 0 2 1611 1029 234 16 0 chr6 134567717 134567909 -14949128 - B3 SINE B2 -6 210 16 2 1611 585 233 0 0 chr6 134568018 134568134 -14948903 + B3 SINE B2 101 216 0 2 1611 532 243 7 62 chr6 134568180 134568325 -14948712 + ID_B1 SINE B4 87 223 -1 2 1611 233 293 0 0 chr6 134568432 134568489 -14948548 + ID_B1 SINE B4 163 219 -5 2 1611 398 284 11 0 chr6 134568489 134568596 -14948441 + B1F2 SINE Alu 1 109 -11 2 1611 306 0 0 0 chr6 134568596 134568630 -14948407 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2 1611 315 120 0 20 chr6 134568884 134568935 -14948102 - B2_Mm2 SINE B2 -99 96 47 2 1611 1181 147 11 0 chr6 134568981 134569158 -14947879 - B2_Mm1t SINE B2 -14 179 1 2 1611 235 244 105 93 chr6 134569220 134569306 -14947731 - Charlie4z DNA MER1_type -34 133 47 2 1611 1419 251 50 85 chr6 134569587 134570106 -14946931 + RLTR20B3 LTR ERVK 21 521 -56 2 1611 1041 290 81 144 chr6 134570298 134570753 -14946284 - MER21B LTR ERV1 -109 754 357 2 1611 260 53 26 0 chr6 134570753 134570791 -14946246 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1611 1041 290 81 144 chr6 134570791 134571104 -14945933 - MER21B LTR ERV1 -507 356 35 2 1611 425 254 31 39 chr6 134571116 134571243 -14945794 + B1F SINE Alu 24 149 0 2 1611 536 204 179 0 chr6 134571248 134571410 -14945627 + B3A SINE B2 2 192 -6 2 1611 227 65 0 0 chr6 134571486 134571517 -14945520 + RMER6D LTR ERVK 690 720 0 2 1611 538 155 27 64 chr6 134572091 134572201 -14944836 + B1F SINE Alu 41 146 -3 2 1611 555 267 96 47 chr6 134572177 134572388 -14944649 + B3A SINE B2 10 216 0 2 1611 235 117 32 32 chr6 134572990 134573052 -14943985 + (CCTG)n Simple_repeat Simple_repeat 2 63 0 2 1611 393 253 0 20 chr6 134573067 134573175 -14943862 - PB1D9 SINE Alu -2 118 13 2 1611 1086 257 50 134 chr6 134573199 134573603 -14943434 + ORR1D2 LTR MaLR 1 370 0 2 1611 458 319 52 35 chr6 134573686 134573858 -14943179 - B4A SINE B4 -117 175 1 2 1611 663 295 32 5 chr6 134574049 134574267 -14942770 + ID_B1 SINE B4 1 224 0 2 1611 363 44 0 0 chr6 134574290 134574335 -14942702 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1611 231 36 0 0 chr6 134574335 134574362 -14942675 + (CATA)n Simple_repeat Simple_repeat 3 30 0 2 1611 903 267 92 45 chr6 134574368 134574653 -14942384 + L1MC2 LINE L1 4462 4771 -1375 2 1611 1200 42 21 0 chr6 134574653 134574797 -14942240 + B1_Mm SINE Alu 1 147 0 2 1611 191 36 36 0 chr6 134574799 134574827 -14942210 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1611 903 267 92 45 chr6 134574827 134574942 -14942095 + L1MC2 LINE L1 4772 4884 -1262 2 1611 354 100 0 0 chr6 134574961 134575021 -14942016 + (G)n Simple_repeat Simple_repeat 1 60 0 2 1611 482 247 105 12 chr6 134575026 134575198 -14941839 + B3A SINE B2 4 191 -7 2 1611 485 268 22 79 chr6 134575218 134575400 -14941637 + L1MC2 LINE L1 4910 5084 -1062 2 1611 258 56 0 0 chr6 134575400 134575436 -14941601 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1611 485 268 22 79 chr6 134575436 134575480 -14941557 + L1MC2 LINE L1 5085 5123 -1023 2 1611 971 216 14 37 chr6 134575506 134575722 -14941315 - B3 SINE B2 -5 211 1 2 1611 277 174 29 0 chr6 134575793 134575862 -14941175 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1611 181 0 69 0 chr6 134575859 134575888 -14941149 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 2 1611 425 299 74 7 chr6 134575888 134576023 -14941014 - B4A SINE B4 -7 285 142 2 1611 253 332 58 108 chr6 134576103 134576343 -14940694 + MT2B LTR ERVL 37 264 -337 2 1611 226 336 66 88 chr6 134576212 134576228 -14940809 + B4 SINE B4 70 111 -181 2 1611 653 267 20 14 chr6 134576228 134576376 -14940661 + B1_Mur2 SINE Alu 1 149 0 2 1611 226 336 66 88 chr6 134576376 134576440 -14940597 + B4 SINE B4 112 292 0 2 1611 312 137 0 0 chr6 134576470 134576521 -14940516 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1611 1152 247 26 10 chr6 134576532 134576843 -14940194 + L1MC2 LINE L1 5360 5675 -669 2 1611 338 226 0 79 chr6 134576891 134576992 -14940045 + B3A SINE B2 103 195 -3 2 1611 261 0 0 0 chr6 134577010 134577039 -14939998 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1611 293 270 60 0 chr6 134577046 134577146 -14939891 + L1MC2 LINE L1 5705 5810 -1975 2 1611 9812 111 20 1 chr6 134577146 134579027 -14938010 + Lx2 LINE L1 5068 6989 -8 2 1611 673 124 142 0 chr6 134579059 134579172 -14937865 + B1_Mur3 SINE Alu 13 141 -8 2 1611 752 32 11 0 chr6 134579182 134579277 -14937760 + (GGAA)n Simple_repeat Simple_repeat 4 99 0 2 1611 486 259 79 127 chr6 134579281 134579423 -14937614 + L1MC2 LINE L1 5824 5951 -393 2 1611 884 239 49 0 chr6 134579423 134579628 -14937409 + B3 SINE B2 1 215 -1 2 1611 800 215 14 0 chr6 134579628 134579772 -14937265 - B1_Mur2 SINE Alu -2 147 2 2 1611 486 259 79 127 chr6 134579772 134579982 -14937055 + L1MC2 LINE L1 5952 6159 -185 2 1611 322 224 0 15 chr6 134580170 134580238 -14936799 + B1F SINE Alu 74 140 -9 2 1611 315 0 0 0 chr6 134580238 134580273 -14936764 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1611 426 39 0 0 chr6 134580273 134580324 -14936713 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1611 826 253 123 14 chr6 134580375 134580652 -14936385 - Charlie4a DNA MER1_type -181 327 21 2 1611 713 236 7 0 chr6 134580818 134580958 -14936079 + RSINE1 SINE B4 11 151 -14 2 1611 783 132 8 0 chr6 134581032 134581153 -14935884 + B1_Mus1 SINE Alu 27 148 0 2 1611 402 319 67 8 chr6 134581163 134581283 -14935754 + B4 SINE B4 72 198 -94 2 1611 657 252 7 14 chr6 134581179 134581324 -14935713 + B1_Mur1 SINE Alu 5 148 -1 2 1611 1214 106 6 0 chr6 134581407 134581577 -14935460 + B2_Mm2 SINE B2 2 172 -23 2 1611 235 131 66 0 chr6 134581795 134581856 -14935181 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 2 1611 433 290 22 0 chr6 134582737 134582875 -14934162 - ID_B1 SINE B4 -2 222 82 2 1611 437 206 58 10 chr6 134583067 134583170 -14933867 - ID_B1 SINE B4 0 224 117 2 1611 238 283 0 157 chr6 134583170 134583201 -14933836 - PB1D7 SINE Alu 0 120 8 2 1611 1146 49 21 0 chr6 134583310 134583454 -14933583 + B1_Mm SINE Alu 1 147 0 2 1611 234 81 0 0 chr6 134583940 134583977 -14933060 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1611 231 236 128 53 chr6 134584030 134584124 -14932913 + PB1D10 SINE Alu 16 116 -1 2 1611 366 314 64 0 chr6 134584236 134584376 -14932661 + B1F1 SINE Alu 1 149 0 2 1611 474 163 90 20 chr6 134584398 134584498 -14932539 + B3A SINE B2 2 108 -90 2 1611 698 186 24 0 chr6 134584495 134584619 -14932418 - B1_Mus1 SINE Alu -21 127 1 2 1611 412 240 66 88 chr6 134584619 134584646 -14932391 - MT2B LTR ERVL -447 154 131 2 1611 909 277 9 49 chr6 134584643 134584655 -14932382 - B3 SINE B2 0 216 206 2 1611 819 201 0 0 chr6 134584655 134584794 -14932243 + B1_Mur2 SINE Alu 5 143 -6 2 1611 909 277 9 49 chr6 134584794 134585005 -14932032 - B3 SINE B2 -11 205 2 2 1611 189 0 0 0 chr6 134585005 134585026 -14932011 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1611 296 321 0 24 chr6 134585032 134585115 -14931922 + ID4_ SINE ID 2 82 -1 2 1611 571 193 34 16 chr6 134585198 134585324 -14931713 - PB1D10 SINE Alu -14 136 3 2 1611 468 304 0 50 chr6 134585947 134586057 -14930980 + PB1D7 SINE Alu 1 109 -11 2 1611 213 65 0 0 chr6 134586057 134586088 -14930949 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2 1611 1361 45 79 0 chr6 134586212 134586390 -14930647 - B2_Mm2 SINE B2 -3 192 1 2 1611 730 248 0 26 chr6 134586556 134586709 -14930328 + B3A SINE B2 3 151 -47 2 1611 794 142 80 22 chr6 134586796 134586933 -14930104 + B1_Mm SINE Alu 3 147 0 2 1611 234 116 0 0 chr6 134586933 134586976 -14930061 + (CAAAAA)n Simple_repeat Simple_repeat 1 43 0 2 1611 339 250 173 24 chr6 134587001 134587128 -14929909 + B1F SINE Alu 1 146 -3 2 1611 484 242 16 62 chr6 134587477 134587605 -14929432 - ID_B1 SINE B4 -1 223 102 2 1611 2865 78 29 3 chr6 134587895 134588280 -14928757 + MTB LTR MaLR 6 400 0 2 1611 401 296 30 48 chr6 134588290 134588457 -14928580 - RNLTR23 LTR ERVK 0 642 479 2 1611 5600 138 88 33 chr6 134588747 134588956 -14928081 + MTC-int LTR MaLR 7 216 -1042 2 1611 198 0 0 0 chr6 134588956 134588978 -14928059 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1611 1166 65 0 0 chr6 134588978 134589117 -14927920 - B1_Mus1 SINE Alu -8 140 2 2 1611 5600 138 88 33 chr6 134589117 134589970 -14927067 + MTC-int LTR MaLR 217 1128 -130 2 1611 392 193 104 31 chr6 134590412 134590526 -14926511 + PB1D7 SINE Alu 2 120 0 2 1611 1521 62 0 39 chr6 134590576 134590779 -14926258 - B2_Mm2 SINE B2 0 195 1 2 1611 21 0 0 0 chr6 134591661 134591682 -14925355 + AT_rich Low_complexity Low_complexity 1 21 0 3 1611 294 229 97 28 chr6 134593165 134593237 -14923800 + ID4 SINE ID 2 78 -5 3 1611 947 215 19 24 chr6 134593412 134593622 -14923415 - B3 SINE B2 -7 209 1 3 1611 789 164 0 0 chr6 134593757 134593879 -14923158 - B1_Mur2 SINE Alu -22 127 6 3 1611 1203 75 121 0 chr6 134594032 134594206 -14922831 + B2_Mm2 SINE B2 1 195 0 3 1611 183 129 0 0 chr6 134594209 134594240 -14922797 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 3 1611 297 89 0 0 chr6 134594715 134594760 -14922277 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1611 591 267 7 7 chr6 134594761 134594897 -14922140 - RSINE1 SINE B4 -26 139 4 3 1611 188 368 42 10 chr6 134594923 134595019 -14922018 + L2a LINE L2 3309 3407 -19 3 1611 886 214 147 16 chr6 134595342 134595594 -14921443 - B4 SINE B4 -4 288 4 3 1611 345 0 0 0 chr6 134595595 134595635 -14921402 + tRNA-Ile-ATT tRNA tRNA 1 40 -37 3 1611 380 309 118 109 chr6 134595787 134596125 -14920912 - MLT1A0 LTR MaLR -24 341 1 3 1611 225 287 108 76 chr6 134596509 134596694 -14920343 - Charlie11 DNA MER1_type -654 1542 1352 3 1611 283 235 143 17 chr6 134598613 134598724 -14918313 + B1F2 SINE Alu 7 127 -20 3 1611 543 248 39 8 chr6 134599659 134599789 -14917248 - RSINE1 SINE B4 -29 136 3 3 1611 1269 101 31 31 chr6 134600168 134600362 -14916675 - B2_Mm2 SINE B2 -1 194 1 3 1611 886 113 27 34 chr6 134600373 134600520 -14916517 - B1_Mus1 SINE Alu -1 147 2 3 1611 26 30 0 0 chr6 134600529 134600562 -14916475 + AT_rich Low_complexity Low_complexity 1 33 0 3 1611 228 23 67 22 chr6 134600596 134600641 -14916396 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1611 1147 68 0 7 chr6 134600644 134600793 -14916244 - B1_Mus1 SINE Alu 0 148 1 3 1611 433 234 0 0 chr6 134600812 134600889 -14916148 - B3A SINE B2 -121 77 1 3 1611 649 245 108 52 chr6 134600907 134601101 -14915936 - B4 SINE B4 -87 205 1 3 1611 1201 229 132 48 chr6 134601112 134601290 -14915747 + MTD LTR MaLR 3 191 -228 3 1611 874 219 32 59 chr6 134601290 134601509 -14915528 + B3 SINE B2 1 213 -3 3 1611 1201 226 117 56 chr6 134601509 134601714 -14915323 + MTD LTR MaLR 192 405 -14 3 1611 324 239 0 53 chr6 134601862 134601937 -14915100 - ID4_ SINE ID -9 74 4 3 1611 189 0 0 0 chr6 134601994 134602015 -14915022 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1611 994 93 146 18 chr6 134602083 134602248 -14914789 + B2_Mm2 SINE B2 1 186 -9 3 1611 1131 83 0 0 chr6 134602262 134602418 -14914619 + (TG)n Simple_repeat Simple_repeat 2 157 0 3 1611 772 260 0 0 chr6 134602419 134602569 -14914468 - B3A SINE B2 -48 150 1 3 1611 611 299 50 20 chr6 134602587 134602785 -14914252 - B4 SINE B4 -87 205 2 3 1611 919 115 42 0 chr6 134602792 134602957 -14914080 - B2_Mm2 SINE B2 -23 193 1 3 1611 431 251 61 38 chr6 134603324 134603508 -14913529 - L1MEg LINE L1 -4041 2359 2170 3 1611 237 33 0 0 chr6 134603520 134603550 -14913487 + (TTG)n Simple_repeat Simple_repeat 1 30 0 3 1611 214 254 85 0 chr6 134603550 134603600 -14913437 - PB1D7 SINE Alu -12 108 54 3 1611 710 240 62 0 chr6 134603828 134603974 -14913063 - ID_B1 SINE B4 -2 222 68 3 1611 392 315 153 30 chr6 134603983 134604454 -14912583 - L1MC4 LINE L1 -843 7199 6671 3 1611 587 262 12 24 chr6 134604570 134604734 -14912303 - RSINE1 SINE B4 0 165 4 3 1611 587 51 13 0 chr6 134604885 134604964 -14912073 + (TC)n Simple_repeat Simple_repeat 2 81 0 3 1611 509 196 62 0 chr6 134604966 134605063 -14911974 - B1_Mur4 SINE Alu -46 104 2 3 1611 215 103 0 25 chr6 134605085 134605125 -14911912 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 3 1611 452 257 91 129 chr6 134605125 134605357 -14911680 - ID_B1 SINE B4 0 224 2 3 1611 350 297 119 25 chr6 134605626 134605785 -14911252 - L1MEg LINE L1 -5505 895 722 3 1611 773 164 52 7 chr6 134605849 134605984 -14911053 - ID_B1 SINE B4 -1 223 83 3 1611 304 315 91 36 chr6 134606070 134606291 -14910746 - L1MEg LINE L1 -5836 564 332 3 1611 775 298 117 21 chr6 134606359 134606692 -14910345 + MLT1A0 LTR MaLR 1 365 0 3 1611 322 210 111 0 chr6 134606692 134606773 -14910264 - L1MEg LINE L1 -6142 258 169 3 1611 259 120 100 0 chr6 134607143 134607193 -14909844 - Lx2 LINE L1 -2 6995 6941 3 1611 218 329 73 0 chr6 134607237 134607319 -14909718 - L2b LINE L2 -227 3148 3061 3 1611 510 262 21 0 chr6 134607592 134607733 -14909304 + B1F SINE Alu 5 148 -1 3 1611 207 0 0 0 chr6 134608032 134608055 -14908982 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1611 1304 20 0 0 chr6 134608055 134608202 -14908835 - B1_Mus2 SINE Alu 0 147 1 3 1611 852 184 7 0 chr6 134608910 134609046 -14907991 - B1_Mus1 SINE Alu -9 139 3 3 1611 213 75 48 48 chr6 134609379 134609421 -14907616 + T-rich Low_complexity Low_complexity 2 43 0 3 1611 292 269 0 0 chr6 134609458 134609525 -14907512 - RSINE1 SINE B4 -87 78 12 3 1611 278 304 0 61 chr6 134609858 134609956 -14907081 + L1M4 LINE L1 5731 5822 -356 3 1611 355 248 28 47 chr6 134610290 134610314 -14906723 - RSINE1 SINE B4 -188 104 1 3 1611 669 61 0 0 chr6 134610314 134610396 -14906641 - B2_Mm2 SINE B2 -113 82 1 3 1611 751 249 173 0 chr6 134610441 134610626 -14906411 - ID_B1 SINE B4 0 224 8 3 1611 332 173 0 0 chr6 134610632 134610684 -14906353 + PB1D10 SINE Alu 55 106 -11 3 1612 355 301 191 16 chr6 134611069 134611258 -14905779 - MER58A DNA MER1_type 0 224 3 3 1612 514 234 63 40 chr6 134611281 134611455 -14905582 - L1MCa LINE L1 -4533 1869 1642 3 1612 833 225 122 30 chr6 134611484 134611570 -14905467 - B3 SINE B2 0 216 117 3 1612 2268 139 73 3 chr6 134611570 134611938 -14905099 - ORR1B1 LTR MaLR 0 394 1 3 1612 761 244 38 32 chr6 134611938 134612048 -14904989 - B3 SINE B2 -100 116 2 3 1612 330 26 0 0 chr6 134612058 134612097 -14904940 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 3 1612 912 139 14 0 chr6 134612097 134612241 -14904796 - B2_Mm2 SINE B2 -38 157 12 3 1612 547 326 90 15 chr6 134612333 134612769 -14904268 - L1ME1 LINE L1 -20 6159 5699 3 1612 693 233 0 20 chr6 134612827 134612976 -14904061 + B1_Mus2 SINE Alu 1 146 -1 3 1612 528 295 113 15 chr6 134613785 134613988 -14903049 - ID_B1 SINE B4 -69 223 1 3 1612 377 297 50 109 chr6 134613999 134614237 -14902800 - ID_B1 SINE B4 0 224 1 3 1612 190 146 20 40 chr6 134615282 134615332 -14901705 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 3 1612 240 250 16 16 chr6 134615355 134615416 -14901621 - B4 SINE B4 -16 276 216 3 1612 582 15 0 0 chr6 134615440 134615507 -14901530 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 1612 480 245 49 194 chr6 134615510 134615747 -14901290 - B4A SINE B4 -13 279 87 3 1612 1263 121 11 0 chr6 134615747 134615937 -14901100 - B2_Mm1t SINE B2 0 193 2 3 1612 480 245 49 194 chr6 134615937 134616023 -14901014 - B4A SINE B4 -206 86 3 3 1612 455 342 35 35 chr6 134616026 134616253 -14900784 - B4A SINE B4 -64 228 2 3 1612 516 273 53 0 chr6 134616412 134616544 -14900493 - B1F1 SINE Alu -7 142 4 3 1612 24 0 0 0 chr6 134616674 134616698 -14900339 + GC_rich Low_complexity Low_complexity 1 24 0 3 1612 422 147 351 18 chr6 134616792 134616903 -14900134 - B1_Mur2 SINE Alu 0 149 2 3 1612 641 73 5 139 chr6 134617138 134617346 -14899691 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 3 1612 393 75 0 0 chr6 134617393 134617446 -14899591 + (TGAG)n Simple_repeat Simple_repeat 4 56 0 3 1612 347 195 12 12 chr6 134618222 134618305 -14898732 + B3A SINE B2 4 86 -112 3 1612 286 287 60 9 chr6 134618332 134618448 -14898589 + L3 LINE CR1 3643 3764 -725 3 1612 702 277 31 5 chr6 134618701 134618893 -14898144 + B3A SINE B2 1 197 -1 3 1612 226 303 0 95 chr6 134619787 134619807 -14897230 - BC1_Mm scRNA scRNA -62 90 72 3 1612 249 33 0 0 chr6 134619807 134619837 -14897200 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1612 296 258 0 7 chr6 134619837 134619905 -14897132 - ID4 SINE ID -11 72 10 3 1612 1387 82 11 0 chr6 134620666 134620850 -14896187 + B2_Mm1t SINE B2 2 187 -6 3 1612 198 179 0 0 chr6 134621573 134621629 -14895408 + C-rich Low_complexity Low_complexity 4 59 0 3 1612 455 297 23 15 chr6 134623644 134623774 -14893263 + ID_B1 SINE B4 91 221 -3 3 1612 465 249 84 69 chr6 134623814 134624017 -14893020 + MTEa LTR MaLR 53 258 -121 3 1612 505 279 7 7 chr6 134624213 134624350 -14892687 + MTEa LTR MaLR 243 379 0 3 1612 276 328 76 44 chr6 134624551 134624867 -14892170 - L1M5 LINE L1 -452 5788 5463 3 1612 218 262 12 0 chr6 134625677 134625761 -14891276 + CT-rich Low_complexity Low_complexity 2 86 0 3 1612 263 355 7 80 chr6 134625769 134625919 -14891118 - B3A SINE B2 0 198 60 3 1612 327 234 82 82 chr6 134626155 134626313 -14890724 - B3A SINE B2 -28 170 13 3 1612 343 277 213 15 chr6 134626356 134626647 -14890390 - MTEa LTR MaLR -37 342 1 3 1612 27 29 0 0 chr6 134626672 134626706 -14890331 + AT_rich Low_complexity Low_complexity 1 34 0 3 1612 1620 47 0 0 chr6 134626706 134626897 -14890140 - B2_Mm1a SINE B2 -1 192 2 3 1612 748 178 83 39 chr6 134626934 134627139 -14889898 - B3 SINE B2 0 216 3 3 1612 419 263 0 21 chr6 134628467 134628564 -14888473 + B1F1 SINE Alu 3 97 -52 3 1612 630 0 0 0 chr6 134628571 134628641 -14888396 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1612 189 0 0 0 chr6 134628641 134628661 -14888376 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1612 556 305 116 90 chr6 134628771 134628982 -14888055 - MLT1A1 LTR MaLR -4 404 167 3 1612 897 117 0 0 chr6 134628982 134629119 -14887918 + (TTCC)n Simple_repeat Simple_repeat 4 140 0 3 1612 556 305 116 90 chr6 134629119 134629138 -14887899 - MLT1A1 LTR MaLR -242 166 145 3 1612 530 132 18 143 chr6 134629138 134629306 -14887731 - B1_Mus2 SINE Alu 0 147 1 3 1612 556 305 116 90 chr6 134629306 134629321 -14887716 - MLT1A1 LTR MaLR -264 144 137 3 1612 1378 103 0 15 chr6 134629321 134629518 -14887519 - B2_Mm2 SINE B2 0 195 2 3 1612 556 305 116 90 chr6 134629518 134629605 -14887432 - MLT1A1 LTR MaLR -272 136 61 3 1612 733 203 14 0 chr6 134629685 134629828 -14887209 + B1_Mus1 SINE Alu 3 147 -1 3 1612 335 145 24 24 chr6 134629831 134629916 -14887121 + GA-rich Low_complexity Low_complexity 3 87 0 4 1612 682 241 7 7 chr6 134630004 134630150 -14886887 + RSINE1 SINE B4 20 165 0 4 1612 28 29 0 0 chr6 134630150 134630185 -14886852 + AT_rich Low_complexity Low_complexity 1 35 0 4 1612 4188 112 50 6 chr6 134630307 134630972 -14886065 - Lx4A LINE L1 -3 7055 6362 4 1612 818 269 49 23 chr6 134631034 134631339 -14885698 - L1MB3 LINE L1 -20 6163 5851 4 1612 660 317 82 16 chr6 134631409 134631797 -14885240 - L1MB3 LINE L1 -1666 4474 4061 4 1612 466 293 19 26 chr6 134631992 134632146 -14884891 - ID_B1 SINE B4 0 224 72 4 1612 357 234 32 11 chr6 134632744 134632839 -14884198 + B4A SINE B4 1 97 -195 4 1612 615 264 80 0 chr6 134632941 134633104 -14883933 + Lx8 LINE L1 7200 7375 -98 4 1612 856 135 28 14 chr6 134634059 134634202 -14882835 - B1_Mus1 SINE Alu -1 147 3 4 1612 393 295 18 0 chr6 134634404 134634516 -14882521 - ID_B1 SINE B4 0 224 111 4 1612 639 253 53 40 chr6 134634888 134635189 -14881848 + Charlie1b DNA MER1_type 133 437 -86 4 1612 649 250 122 0 chr6 134636646 134636818 -14880219 + ID_B1 SINE B4 18 210 -14 4 1612 1224 54 0 0 chr6 134636834 134636981 -14880056 + B1_Mus2 SINE Alu 1 147 0 4 1612 273 57 0 0 chr6 134636981 134637016 -14880021 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1612 732 234 130 0 chr6 134637961 134638145 -14878892 - ID_B1 SINE B4 -15 209 2 4 1612 1176 61 0 7 chr6 134639169 134639317 -14877720 + B1_Mus2 SINE Alu 1 147 0 4 1612 288 0 0 0 chr6 134639324 134639356 -14877681 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 4 1612 2925 36 2 119 chr6 134639432 134639869 -14877168 - RLTR10 LTR ERVK -4 386 1 4 1612 9054 12 2 1 chr6 134639871 134640863 -14876174 - RLTR10-int LTR ERVK -3 1984 992 4 1612 344 248 62 39 chr6 134640947 134641077 -14875960 - RLTR10-int LTR ERVK -5987 1594 1462 4 1612 8045 43 5 2 chr6 134641141 134642096 -14874941 - RLTR10-int LTR ERVK -989 998 41 4 1612 2925 36 2 119 chr6 134642112 134642549 -14874488 - RLTR10 LTR ERVK -4 386 1 4 1612 650 75 11 0 chr6 134642922 134643015 -14874022 + (TC)n Simple_repeat Simple_repeat 2 95 0 4 1612 183 372 12 0 chr6 134643194 134643280 -14873757 + MIRc SINE MIR 54 140 -128 4 1612 213 65 0 0 chr6 134643793 134643824 -14873213 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 4 1612 294 295 30 44 chr6 134644270 134644405 -14872632 + RMER15 LTR ERVL 356 488 -87 4 1612 708 249 122 35 chr6 134644994 134645247 -14871790 - B4 SINE B4 -7 285 9 4 1612 201 138 0 0 chr6 134645248 134645277 -14871760 + (TCTCCC)n Simple_repeat Simple_repeat 6 34 0 4 1612 201 266 156 0 chr6 134647177 134647241 -14869796 + L2a LINE L2 3348 3421 -5 4 1612 1561 57 5 0 chr6 134648073 134648265 -14868772 - B2_Mm1a SINE B2 0 193 1 4 1612 1877 166 82 10 chr6 134648289 134648678 -14868359 + MTD LTR MaLR 3 419 0 4 1612 180 286 97 7 chr6 134648852 134649007 -14868030 - L2a LINE L2 -139 3287 3119 4 1612 1686 21 0 0 chr6 134649447 134649636 -14867401 + B2_Mm1a SINE B2 1 189 -4 4 1612 228 291 12 48 chr6 134650496 134650579 -14866458 + MLT2B3 LTR ERVL 283 362 -192 4 1612 1167 62 7 0 chr6 134652786 134652931 -14864106 - B1_Mus2 SINE Alu 0 147 2 4 1612 23 0 0 0 chr6 134652947 134652970 -14864067 + AT_rich Low_complexity Low_complexity 1 23 0 4 1612 1529 281 97 12 chr6 134653392 134654123 -14862914 - L1MB7 LINE L1 -48 6136 5344 4 1612 637 249 81 0 chr6 134654399 134654572 -14862465 - B3A SINE B2 -10 188 2 4 1612 736 256 79 42 chr6 134654723 134654988 -14862049 + RMER5 LTR ERV1 214 488 -46 4 1612 218 196 0 0 chr6 134655436 134655487 -14861550 + T-rich Low_complexity Low_complexity 1 51 0 4 1612 1184 55 7 0 chr6 134655487 134655633 -14861404 - B1_Mus1 SINE Alu 0 148 2 4 1612 234 0 0 0 chr6 134655674 134655700 -14861337 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 1612 1150 57 7 0 chr6 134655701 134655841 -14861196 - B1_Mus1 SINE Alu -7 141 1 4 1612 267 209 154 0 chr6 134655959 134656050 -14860987 - PB1D9 SINE Alu 0 120 16 4 1612 279 220 41 62 chr6 134655977 134656074 -14860963 - MT2B LTR ERVL -354 247 153 4 1612 558 238 40 7 chr6 134656511 134656663 -14860374 - RMER5 LTR ERV1 -18 516 360 4 1612 445 292 178 0 chr6 134656837 134657056 -14859981 - L1M2 LINE L1 -1300 4843 4586 4 1612 1274 76 37 31 chr6 134657067 134657098 -14859939 - B2_Mm1a SINE B2 0 193 161 4 1612 234 0 0 0 chr6 134657098 134657124 -14859913 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 4 1612 1274 76 37 31 chr6 134657124 134657283 -14859754 - B2_Mm1a SINE B2 -33 160 2 4 1612 1168 55 0 0 chr6 134658969 134659114 -14857923 + B1_Mus2 SINE Alu 2 146 -1 4 1612 698 195 13 0 chr6 134659849 134660003 -14857034 - URR1A DNA MER1_type -36 190 35 4 1612 446 207 75 68 chr6 134661274 134661435 -14855602 - RSINE1 SINE B4 -1 164 3 4 1612 234 308 112 0 chr6 134661601 134661708 -14855329 - B1F1 SINE Alu -10 139 21 4 1612 273 292 52 17 chr6 134663140 134663255 -14853782 + ORR1E LTR MaLR 6 124 -235 4 1612 443 324 14 29 chr6 134663731 134663871 -14853166 + B1F1 SINE Alu 10 147 -2 4 1612 1378 185 177 28 chr6 134663940 134664296 -14852741 + MTD LTR MaLR 3 411 -8 4 1612 365 147 29 14 chr6 134664523 134664592 -14852445 - ID4 SINE ID -10 73 4 4 1612 489 17 0 0 chr6 134664640 134664698 -14852339 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1612 381 265 0 56 chr6 134664713 134664821 -14852216 - RSINE1 SINE B4 -61 104 3 4 1612 666 290 46 18 chr6 134664966 134665184 -14851853 - ID_B1 SINE B4 0 224 1 4 1612 198 0 0 0 chr6 134667047 134667069 -14849968 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 4 1612 880 232 131 0 chr6 134670958 134671195 -14845842 - B4 SINE B4 -21 271 4 4 1612 808 137 22 0 chr6 134671525 134671664 -14845373 - B1_Mur4 SINE Alu 0 150 9 4 1612 602 236 136 11 chr6 134672312 134672488 -14844549 + B3A SINE B2 1 198 0 4 1612 1432 60 16 11 chr6 134672610 134672795 -14844242 - B2_Mm2 SINE B2 -9 186 1 4 1612 234 254 17 0 chr6 134673081 134673140 -14843897 + RSINE1 SINE B4 88 147 -18 4 1612 552 68 0 0 chr6 134673588 134673661 -14843376 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1612 215 302 77 64 chr6 134674133 134674357 -14842680 - MIRb SINE MIR -23 245 15 4 1612 733 286 5 10 chr6 134674818 134675019 -14842018 - B3 SINE B2 -3 213 14 4 1612 360 0 0 0 chr6 134675777 134675817 -14841220 + (TATG)n Simple_repeat Simple_repeat 1 40 0 4 1612 1148 64 23 23 chr6 134676107 134676266 -14840771 + B2_Mm2 SINE B2 1 158 -37 4 1612 258 32 0 0 chr6 134676266 134676297 -14840740 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 4 1612 1148 64 23 23 chr6 134676297 134676312 -14840725 + B2_Mm2 SINE B2 159 175 -20 4 1612 494 258 8 8 chr6 134676920 134677045 -14839992 - PB1 SINE Alu -2 125 1 4 1612 280 220 45 100 chr6 134677070 134677202 -14839835 - MIRb SINE MIR -49 219 90 4 1612 607 268 12 19 chr6 134677358 134677518 -14839519 + B4 SINE B4 67 225 -67 4 1612 1576 274 110 6 chr6 134677796 134678279 -14838758 + RMER1B Other Other 1 510 -556 4 1612 1400 246 39 23 chr6 134678280 134678728 -14838309 + RMER1A Other Other 45 446 -584 4 1612 748 232 121 13 chr6 134678732 134678958 -14838079 + RMER1A Other Other 228 539 -527 4 1612 320 0 25 0 chr6 134678958 134678998 -14838039 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1612 682 239 102 0 chr6 134678998 134679031 -14838006 + RMER1B Other Other 540 558 -508 4 1612 1217 35 7 0 chr6 134679061 134679205 -14837832 + B1_Mus2 SINE Alu 2 146 -1 4 1612 25 31 0 0 chr6 134679414 134679446 -14837591 + AT_rich Low_complexity Low_complexity 1 32 0 4 1612 434 18 18 0 chr6 134679599 134679654 -14837383 + (CAGG)n Simple_repeat Simple_repeat 3 58 0 4 1612 23 0 0 0 chr6 134679787 134679810 -14837227 + AT_rich Low_complexity Low_complexity 1 23 0 4 1612 215 222 0 82 chr6 134679810 134679859 -14837178 + ID4_ SINE ID 15 59 -24 4 1612 459 0 0 0 chr6 134679875 134679926 -14837111 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4 1612 1389 71 0 0 chr6 134679933 134680213 -14836824 + (TAGG)n Simple_repeat Simple_repeat 1 280 0 4 1612 611 213 56 41 chr6 134680299 134680495 -14836542 - Tigger13a DNA MER2_type -415 356 158 4 1612 685 251 35 12 chr6 134680677 134680846 -14836191 - B3A SINE B2 -24 174 2 4 1612 639 351 77 31 chr6 134681259 134682061 -14834976 + L2 LINE L2 967 1805 -1614 4 1612 3984 125 37 0 chr6 134682061 134682687 -14834350 + Lx3C LINE L1 5638 6286 -690 4 1612 429 70 0 0 chr6 134682715 134682772 -14834265 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1612 388 58 0 0 chr6 134683426 134683478 -14833559 - B1_Mus1 SINE Alu -95 53 2 4 1612 379 322 105 0 chr6 134684129 134684300 -14832737 - MER2 DNA MER2_type -119 226 38 4 1612 26 30 0 0 chr6 134684470 134684503 -14832534 + AT_rich Low_complexity Low_complexity 1 33 0 4 1612 376 242 48 39 chr6 134684511 134684614 -14832423 + PB1D10 SINE Alu 1 104 -13 4 1612 668 228 0 0 chr6 134684867 134684994 -14832043 + B1_Mur2 SINE Alu 1 127 -22 4 1612 270 56 0 0 chr6 134685026 134685062 -14831975 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1612 368 314 34 0 chr6 134685345 134685463 -14831574 - B1F SINE Alu -26 123 2 4 1612 211 250 0 0 chr6 134686305 134686349 -14830688 + ID4 SINE ID 2 45 -38 4 1612 560 235 109 18 chr6 134686695 134686916 -14830121 + Charlie5 DNA MER1_type 2365 2605 -19 4 1612 1302 220 142 33 chr6 134686919 134687347 -14829690 + RMER19A LTR ERVK 263 737 0 4 1612 246 62 0 0 chr6 134687481 134687513 -14829524 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 4 1612 237 210 0 0 chr6 134687764 134687826 -14829211 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1612 503 344 0 7 chr6 134687844 134687999 -14829038 - RSINE1 SINE B4 -6 159 6 4 1612 2297 145 74 5 chr6 134688037 134688431 -14828606 + MTC LTR MaLR 1 421 0 5 1612 410 226 61 0 chr6 134688630 134688745 -14828292 + ID_B1 SINE B4 103 224 0 5 1612 318 276 0 38 chr6 134688758 134688771 -14828266 + B4 SINE B4 76 85 -207 5 1612 390 206 14 1 chr6 134688771 134688853 -14828184 + B1_Mur3 SINE Alu 1 83 -44 5 1612 318 259 168 9 chr6 134690510 134690623 -14826414 - ID_B1 SINE B4 -11 213 83 5 1612 598 267 0 0 chr6 134690884 134691004 -14826033 - RSINE1 SINE B4 -35 130 11 5 1612 268 301 36 43 chr6 134692072 134692211 -14824826 - MER103 DNA DNA -24 142 5 5 1612 1249 7 0 0 chr6 134692908 134693047 -14823990 - B1_Mus2 SINE Alu -8 139 1 5 1612 290 28 0 0 chr6 134693114 134693150 -14823887 - RLTR13B3 LTR ERVK -892 37 2 5 1612 444 19 0 0 chr6 134693150 134693203 -14823834 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1612 302 356 0 177 chr6 134694790 134694886 -14822151 - B1_Mur2 SINE Alu 0 149 74 5 1612 961 85 54 0 chr6 134694886 134695016 -14822021 + B1_Mus1 SINE Alu 1 137 -11 5 1612 302 356 0 177 chr6 134695016 134695100 -14821937 - B1_Mur2 SINE Alu -76 73 1 5 1612 935 108 115 0 chr6 134695859 134696016 -14821021 + B2_Mm2 SINE B2 7 181 -14 5 1612 266 113 77 46 chr6 134696067 134696132 -14820905 + B2_Mm1a SINE B2 123 189 -4 5 1612 501 172 9 100 chr6 134696137 134696247 -14820790 + B3 SINE B2 2 101 -115 5 1612 629 94 256 0 chr6 134696244 134696361 -14820676 - B2_Mm2 SINE B2 -44 151 5 5 1612 1270 81 35 0 chr6 134696895 134697069 -14819968 + B2_Mm2 SINE B2 2 181 -14 5 1612 414 80 15 3 chr6 134697112 134697177 -14819860 + B2_Mm2 SINE B2 47 109 -107 5 1612 30 0 0 0 chr6 134697189 134697219 -14819818 + AT_rich Low_complexity Low_complexity 1 30 0 5 1612 448 252 25 16 chr6 134697739 134697860 -14819177 - RSINE1 SINE B4 -39 126 5 5 1612 263 267 29 19 chr6 134697918 134698021 -14819016 + ID_B1 SINE B4 121 224 0 5 1612 187 356 0 0 chr6 134698196 134698255 -14818782 + L2a LINE L2 3360 3418 -8 5 1612 1557 57 0 15 chr6 134698889 134699085 -14817952 - B2_Mm1t SINE B2 0 193 1 5 1612 265 373 0 0 chr6 134699180 134699290 -14817747 + PB1D10 SINE Alu 1 110 -7 5 1612 2688 121 111 35 chr6 134699495 134700045 -14816992 + RMER6A LTR ERVK 1 592 -164 5 1612 698 164 30 0 chr6 134700072 134700206 -14816831 + B1_Mur2 SINE Alu 12 149 0 5 1612 246 264 169 8 chr6 134700219 134700349 -14816688 - L2b LINE L2 -6 3369 3219 5 1612 260 19 18 71 chr6 134700381 134700437 -14816600 + (CAAAAA)n Simple_repeat Simple_repeat 1 53 0 5 1612 292 220 45 27 chr6 134700616 134700728 -14816309 + GA-rich Low_complexity Low_complexity 2 115 0 5 1612 422 239 0 43 chr6 134701213 134701305 -14815732 - PB1D10 SINE Alu -25 92 5 5 1612 272 339 44 59 chr6 134701409 134701544 -14815493 - RSINE1 SINE B4 -19 146 14 5 1612 351 146 99 67 chr6 134702246 134702353 -14814684 - L1MA9 LINE L1 -121 6170 6056 5 1612 415 227 71 18 chr6 134702498 134702610 -14814427 - L1MA9 LINE L1 -343 5969 5852 5 1612 425 115 22 33 chr6 134702641 134702731 -14814306 - Lx LINE L1 -1 6653 6565 5 1612 219 286 31 16 chr6 134702734 134702798 -14814239 - ID SINE ID -158 66 2 5 1612 350 167 0 48 chr6 134703458 134703521 -14813516 + B3 SINE B2 7 66 -150 5 1612 586 99 0 0 chr6 134703533 134703624 -14813413 + ORR1B2 LTR MaLR 17 107 -260 5 1612 711 185 44 0 chr6 134703657 134703792 -14813245 + B1_Mur2 SINE Alu 1 141 -8 5 1612 495 0 0 0 chr6 134703811 134703866 -14813171 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 5 1612 332 43 0 21 chr6 134704599 134704646 -14812391 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 5 1612 3651 62 51 0 chr6 134705628 134706208 -14810829 - L1_Mus4 LINE L1 -569 6069 5467 5 1612 3631 122 9 11 chr6 134706208 134706756 -14810281 + L1_Mus4 LINE L1 6075 6621 -15 5 1612 1126 58 0 0 chr6 134706757 134706895 -14810142 + B1_Mm SINE Alu 1 138 -9 5 1612 270 0 0 0 chr6 134707264 134707294 -14809743 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1612 565 233 0 48 chr6 134708338 134708464 -14808573 + PB1D7 SINE Alu 1 120 0 5 1612 357 275 91 8 chr6 134708820 134708941 -14808096 + ID_B1 SINE B4 87 217 -7 5 1612 1297 66 54 16 chr6 134709029 134709213 -14807824 - B2_Mm2 SINE B2 -2 193 3 5 1612 534 310 83 54 chr6 134709499 134709672 -14807365 + B4 SINE B4 44 214 -78 5 1612 1638 26 5 0 chr6 134709672 134709863 -14807174 + B2_Mm1t SINE B2 2 193 0 5 1612 534 310 83 54 chr6 134709863 134709931 -14807106 + B4 SINE B4 215 291 -1 5 1612 352 244 13 0 chr6 134709982 134710060 -14806977 + ID_B1 SINE B4 140 218 -6 5 1612 414 200 68 29 chr6 134710376 134710479 -14806558 - PB1D10 SINE Alu -7 110 4 5 1612 980 105 33 7 chr6 134710504 134710657 -14806380 + B2_Mm2 SINE B2 1 157 -38 5 1612 204 40 0 0 chr6 134710660 134710685 -14806352 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 5 1612 317 311 19 10 chr6 134712802 134712906 -14804131 + PB1D10 SINE Alu 2 106 -11 5 1612 675 236 117 11 chr6 134712967 134713155 -14803882 + B3 SINE B2 2 209 -7 5 1612 4603 184 63 24 chr6 134714230 134715104 -14801933 - RMER1B Other Other -2 1064 157 5 1612 991 193 176 21 chr6 134715110 134715343 -14801694 - RMER1B Other Other -733 333 65 5 1612 231 194 57 43 chr6 134715505 134715575 -14801462 + ID4_ SINE ID 3 73 -10 5 1612 325 296 82 82 chr6 134715882 134716029 -14801008 + B4A SINE B4 2 148 -144 5 1612 220 291 38 12 chr6 134716752 134716832 -14800205 - PB1D10 SINE Alu -22 95 14 5 1612 186 286 0 0 chr6 134718447 134718496 -14798541 - MIRm SINE MIR -1 275 227 5 1612 460 286 25 31 chr6 134718702 134718861 -14798176 - B4 SINE B4 -21 271 114 5 1612 31 68 0 0 chr6 134718890 134718949 -14798088 + AT_rich Low_complexity Low_complexity 1 59 0 5 1612 182 62 31 0 chr6 134719085 134719117 -14797920 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 5 1612 383 254 92 8 chr6 134719143 134719262 -14797775 - Lx7 LINE L1 -375 7321 7193 5 1612 803 131 226 6 chr6 134719331 134719508 -14797529 - B3 SINE B2 0 216 1 5 1612 1738 214 67 67 chr6 134719536 134719702 -14797335 - Lx6 LINE L1 -164 7296 7123 5 1612 396 0 0 0 chr6 134719702 134719746 -14797291 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1612 1738 214 67 67 chr6 134719746 134720009 -14797028 - Lx6 LINE L1 -338 7122 6868 5 1612 219 250 29 29 chr6 134720020 134720090 -14796947 - B4A SINE B4 -204 88 19 5 1612 1893 168 90 11 chr6 134720094 134720473 -14796564 - MTC LTR MaLR 0 421 13 5 1612 324 280 15 74 chr6 134720649 134720784 -14796253 - MLT1A LTR MaLR -226 148 22 5 1612 288 287 94 41 chr6 134720806 134720977 -14796060 - L2a LINE L2 -153 3273 3094 5 1612 442 91 0 0 chr6 134721030 134721096 -14795941 - 4.5SRNA scRNA scRNA -16 78 13 5 1612 4022 70 39 0 chr6 134721097 134721615 -14795422 + L1Md_F2 LINE L1 6045 6582 0 5 1612 811 183 196 22 chr6 134722118 134722302 -14794735 - B3 SINE B2 0 216 1 5 1612 1731 144 19 47 chr6 134722605 134722969 -14794068 + RLTR15 LTR ERVK 6 359 0 5 1612 376 203 0 48 chr6 134723008 134723091 -14793946 + ID_B1 SINE B4 94 172 -52 5 1612 963 89 0 0 chr6 134723126 134723261 -14793776 + (GGAA)n Simple_repeat Simple_repeat 2 136 0 5 1612 261 0 0 0 chr6 134723353 134723382 -14793655 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1612 848 75 329 0 chr6 134723459 134723605 -14793432 + B2_Mm2 SINE B2 1 194 -1 5 1612 405 0 0 0 chr6 134723650 134723695 -14793342 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1612 23 0 0 0 chr6 134723910 134723933 -14793104 + AT_rich Low_complexity Low_complexity 1 23 0 5 1612 471 48 0 0 chr6 134724266 134724328 -14792709 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1612 191 245 61 0 chr6 134724460 134724509 -14792528 + MIR SINE MIR 28 79 -129 5 1612 956 155 7 0 chr6 134725461 134725609 -14791428 + B1_Mur4 SINE Alu 2 150 0 5 1612 35 63 0 0 chr6 134725613 134725676 -14791361 + AT_rich Low_complexity Low_complexity 1 63 0 5 1612 588 85 92 28 chr6 134725771 134725880 -14791157 - B1_Mus1 SINE Alu -10 138 23 5 1612 1683 31 0 0 chr6 134725889 134726080 -14790957 + B2_Mm1a SINE B2 2 192 -1 5 1612 1246 27 0 0 chr6 134726087 134726233 -14790804 + B1_Mus2 SINE Alu 2 147 0 5 1612 1190 49 0 0 chr6 134726934 134727077 -14789960 - B1_Mm SINE Alu -3 144 2 5 1612 289 257 0 51 chr6 134727885 134727963 -14789074 + PB1D10 SINE Alu 1 74 -43 5 1612 268 269 10 41 chr6 134728406 134728503 -14788534 + ID_B1 SINE B4 111 204 -20 5 1612 301 295 64 37 chr6 134728521 134728630 -14788407 + B1F SINE Alu 7 118 -2 5 1612 1146 84 0 0 chr6 134729462 134729604 -14787433 + B1_Mus2 SINE Alu 1 142 -5 5 1612 1759 103 18 18 chr6 134729606 134729883 -14787154 + Lx2 LINE L1 6721 6997 0 5 1612 330 273 45 9 chr6 134730009 134730120 -14786917 + B1F SINE Alu 20 134 -15 5 1612 198 167 0 0 chr6 134730181 134730217 -14786820 + GA-rich Low_complexity Low_complexity 2 37 0 5 1612 239 0 0 31 chr6 134730304 134730336 -14786701 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 5 1612 31 58 0 0 chr6 134730856 134730908 -14786129 + AT_rich Low_complexity Low_complexity 1 52 0 5 1612 221 196 0 121 chr6 134731094 134731152 -14785885 + RSINE1 SINE B4 1 51 -114 5 1612 307 286 0 0 chr6 134731289 134731408 -14785629 + (CA)n Simple_repeat Simple_repeat 1 119 0 5 1612 3277 145 205 11 chr6 134731424 134732169 -14784868 - RMER19B LTR ERVK -12 890 1 5 1612 266 274 0 0 chr6 134732180 134732253 -14784784 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1612 456 269 52 7 chr6 134732751 134732886 -14784151 - B1F SINE Alu 0 149 9 6 1612 268 271 111 56 chr6 134732914 134733170 -14783867 + MLT1J LTR MaLR 209 555 -55 6 1612 306 169 75 117 chr6 134733589 134733683 -14783354 + RLTR25B LTR ERVK 420 509 -519 6 1612 837 37 0 0 chr6 134733610 134733717 -14783320 + B1_Mm SINE Alu 32 138 -9 6 1612 257 51 0 25 chr6 134733717 134733757 -14783280 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1612 1558 28 22 0 chr6 134733776 134733956 -14783081 + B2_Mm2 SINE B2 2 185 -10 6 1612 1310 260 158 68 chr6 134734530 134735458 -14781579 + Charlie1a DNA MER1_type 342 1353 -102 6 1612 221 273 119 20 chr6 134735597 134735698 -14781339 + PB1D10 SINE Alu 1 111 -6 6 1612 989 45 0 56 chr6 134736686 134736829 -14780208 + B1_Mm SINE Alu 13 147 0 6 1612 201 94 0 0 chr6 134736831 134736863 -14780174 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1612 936 117 19 0 chr6 134737181 134737335 -14779702 - B2_Mm1a SINE B2 -2 191 35 6 1612 204 97 0 0 chr6 134737513 134737544 -14779493 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1612 433 230 53 38 chr6 134737545 134737676 -14779361 + ID_B1 SINE B4 92 224 0 6 1612 415 263 240 0 chr6 134737730 134737901 -14779136 + ID_B1 SINE B4 2 213 -11 6 1612 688 180 35 14 chr6 134738391 134738532 -14778505 + B1_Mur1 SINE Alu 5 148 -1 6 1612 1043 63 0 0 chr6 134738544 134738686 -14778351 + B1_Mus1 SINE Alu 7 148 0 6 1612 342 0 0 0 chr6 134739180 134739218 -14777819 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1612 234 0 0 0 chr6 134741725 134741751 -14775286 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1613 213 121 0 0 chr6 134742072 134742105 -14774932 + (CTCG)n Simple_repeat Simple_repeat 1 33 0 6 1613 47 106 0 0 chr6 134742105 134742285 -14774752 + GC_rich Low_complexity Low_complexity 1 180 0 6 1613 182 105 0 26 chr6 134742773 134742812 -14774225 + (CGGGGG)n Simple_repeat Simple_repeat 4 41 0 6 1613 808 178 0 0 chr6 134743474 134743626 -14773411 + B3 SINE B2 58 209 -7 6 1613 183 42 0 0 chr6 134744550 134744574 -14772463 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1613 327 49 0 0 chr6 134745168 134745209 -14771828 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 6 1613 396 308 42 0 chr6 134745219 134745339 -14771698 - RSINE1 SINE B4 -19 146 22 6 1613 391 261 76 8 chr6 134745388 134745519 -14771518 - B1F SINE Alu -8 141 2 6 1613 288 0 0 0 chr6 134745530 134745562 -14771475 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1613 1300 20 0 0 chr6 134745562 134745709 -14771328 - B1_Mm SINE Alu 0 147 1 6 1613 358 176 12 12 chr6 134745783 134745869 -14771168 + (CATA)n Simple_repeat Simple_repeat 2 87 0 6 1613 385 278 46 31 chr6 134745989 134746119 -14770918 - B1F SINE Alu -17 132 1 6 1613 5632 5 0 0 chr6 134746758 134747371 -14769666 - L1Md_A LINE L1 0 6582 5970 6 1613 39 22 0 0 chr6 134747373 134747419 -14769618 + AT_rich Low_complexity Low_complexity 1 46 0 6 1613 1214 54 0 0 chr6 134747473 134747620 -14769417 + B1_Mus2 SINE Alu 1 147 0 6 1613 354 309 9 0 chr6 134747660 134747770 -14769267 + PB1D7 SINE Alu 3 113 -7 6 1613 989 192 21 0 chr6 134748069 134748262 -14768775 - B3 SINE B2 -19 197 1 6 1613 1188 55 0 7 chr6 134748673 134748820 -14768217 - B1_Mus2 SINE Alu 0 147 2 6 1613 28 61 0 0 chr6 134749067 134749116 -14767921 + AT_rich Low_complexity Low_complexity 1 49 0 6 1613 22 35 0 0 chr6 134749262 134749291 -14767746 + AT_rich Low_complexity Low_complexity 1 29 0 6 1613 1219 54 0 0 chr6 134749740 134749887 -14767150 - B1_Mus2 SINE Alu 0 147 1 6 1613 307 312 54 0 chr6 134749942 134750054 -14766983 + B3A SINE B2 1 118 -80 6 1613 1356 147 0 51 chr6 134750086 134750323 -14766714 + URR1A DNA MER1_type 2 226 0 6 1613 292 268 56 80 chr6 134750399 134750561 -14766476 - B4A SINE B4 0 292 135 6 1613 254 254 125 16 chr6 134750809 134750873 -14766164 - B4A SINE B4 -218 74 4 6 1613 226 297 121 30 chr6 134751797 134751929 -14765108 - MIRb SINE MIR -6 262 119 6 1613 256 289 20 88 chr6 134752195 134752215 -14764822 - YREP_Mm Unknown Unknown -1498 314 180 6 1613 638 192 8 0 chr6 134752215 134752340 -14764697 + B1F SINE Alu 21 146 -3 6 1613 3313 136 101 41 chr6 134753263 134753830 -14763207 + MT2B LTR ERVL 1 601 0 6 1613 392 237 41 0 chr6 134754047 134754144 -14762893 + PB1D10 SINE Alu 11 111 -6 6 1613 226 106 0 41 chr6 134754158 134754207 -14762830 + (GAAAA)n Simple_repeat Simple_repeat 4 50 0 6 1613 764 223 41 31 chr6 134754505 134754699 -14762338 + ID_B1 SINE B4 29 224 0 6 1613 558 307 63 14 chr6 134754802 134755023 -14762014 - MIR SINE MIR -27 235 4 6 1613 344 327 71 24 chr6 134755023 134755209 -14761828 - MIRb SINE MIR -56 212 17 6 1613 498 248 27 171 chr6 134755799 134755946 -14761091 + ID_B1 SINE B4 4 157 -67 6 1613 867 194 75 15 chr6 134755946 134756145 -14760892 + B3 SINE B2 2 212 -4 6 1613 498 248 27 171 chr6 134756145 134756255 -14760782 + ID_B1 SINE B4 158 224 0 6 1613 359 310 40 65 chr6 134756685 134756809 -14760228 + ID_B1 SINE B4 83 203 -21 6 1613 273 322 89 41 chr6 134756701 134756824 -14760213 + B1F SINE Alu 18 146 -3 6 1613 294 292 51 20 chr6 134756988 134757086 -14759951 + PB1D10 SINE Alu 5 105 -12 6 1613 297 51 0 0 chr6 134757086 134757125 -14759912 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1613 180 0 0 0 chr6 134757423 134757443 -14759594 + (C)n Simple_repeat Simple_repeat 1 20 0 6 1613 1277 171 9 0 chr6 134758842 134759052 -14757985 - B3 SINE B2 0 216 5 6 1613 434 297 43 14 chr6 134759266 134759406 -14757631 - B4A SINE B4 -128 164 21 6 1613 184 30 0 57 chr6 134759435 134759470 -14757567 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1613 1188 48 0 7 chr6 134759470 134759608 -14757429 - B1_Mus1 SINE Alu -9 139 2 6 1613 777 254 39 10 chr6 134760020 134760060 -14756977 - ID_B1 SINE B4 -12 212 172 6 1613 2450 77 45 0 chr6 134760060 134760373 -14756664 - ORR1A2 LTR MaLR 0 327 1 6 1613 777 254 39 10 chr6 134760373 134760535 -14756502 - ID_B1 SINE B4 -53 171 6 6 1613 3185 62 5 9 chr6 134760631 134761054 -14755983 - BGLII LTR ERVK 0 421 1 6 1613 673 90 0 0 chr6 134761264 134761364 -14755673 + B2_Mm2 SINE B2 2 101 -94 6 1613 303 186 17 0 chr6 134761503 134761562 -14755475 + B3 SINE B2 1 60 -156 6 1613 1533 38 16 5 chr6 134761565 134761750 -14755287 + B2_Mm2 SINE B2 2 188 -7 6 1613 249 282 159 86 chr6 134761866 134762029 -14755008 + B3 SINE B2 3 177 -39 6 1613 736 146 32 0 chr6 134762029 134762152 -14754885 - L1_Mur2 LINE L1 -3638 2239 2113 6 1613 280 305 48 0 chr6 134762155 134762260 -14754777 - B4A SINE B4 -181 111 2 6 1613 180 0 0 0 chr6 134762361 134762381 -14754656 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1613 1229 54 0 0 chr6 134762386 134762533 -14754504 - B1_Mus2 SINE Alu 0 147 1 6 1613 2503 135 11 19 chr6 134762533 134762673 -14754364 - L1_Mur2 LINE L1 -4172 1705 1573 6 1613 1352 74 10 31 chr6 134762673 134762869 -14754168 - B2_Mm1t SINE B2 0 193 2 6 1613 2503 135 11 19 chr6 134762869 134763189 -14753848 - L1_Mur2 LINE L1 -4305 1572 1249 6 1613 702 164 16 0 chr6 134763191 134763313 -14753724 + B1_Mus1 SINE Alu 18 141 -7 6 1613 200 34 0 33 chr6 134763313 134763343 -14753694 + (TGGGGG)n Simple_repeat Simple_repeat 5 33 0 6 1613 480 254 9 9 chr6 134764587 134764702 -14752335 + B1F SINE Alu 26 140 -9 6 1613 789 226 56 47 chr6 134764898 134765112 -14751925 + ID_B1 SINE B4 2 217 -7 6 1613 239 200 0 0 chr6 134765209 134765254 -14751783 + B3 SINE B2 3 47 -169 6 1613 478 257 18 0 chr6 134765270 134765383 -14751654 - B1_Mm SINE Alu -32 115 1 6 1613 507 247 8 12 chr6 134765385 134765518 -14751519 + B3 SINE B2 32 163 -35 6 1613 437 86 0 28 chr6 134765518 134765590 -14751447 + (CATA)n Simple_repeat Simple_repeat 1 70 0 6 1613 505 264 42 61 chr6 134765590 134765621 -14751416 + B3A SINE B2 164 193 -5 6 1613 316 337 71 0 chr6 134765886 134765984 -14751053 + ID_B1 SINE B4 88 192 -32 6 1613 258 32 0 0 chr6 134766935 134766966 -14750071 + (CCCCCA)n Simple_repeat Simple_repeat 4 34 0 6 1613 726 215 7 0 chr6 134766977 134767112 -14749925 - RSINE1 SINE B4 -29 136 1 6 1613 629 168 64 21 chr6 134768225 134768365 -14748672 + B1_Mus2 SINE Alu 1 146 -1 6 1613 228 53 53 0 chr6 134768523 134768561 -14748476 + MTC LTR MaLR 12 51 -370 6 1613 255 292 88 78 chr6 134768536 134768729 -14748308 + B4 SINE B4 98 292 0 6 1613 441 0 0 0 chr6 134768734 134768783 -14748254 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1613 315 271 0 0 chr6 134768815 134768885 -14748152 + ID_B1 SINE B4 140 209 -15 6 1613 324 0 0 0 chr6 134768887 134768923 -14748114 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 6 1613 671 154 45 23 chr6 134769068 134769201 -14747836 + B1_Mur4 SINE Alu 15 150 0 6 1613 189 107 0 0 chr6 134769207 134769235 -14747802 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 6 1613 359 373 20 7 chr6 134769321 134769472 -14747565 + RSINE1 SINE B4 2 154 -11 6 1613 273 29 0 0 chr6 134769480 134769514 -14747523 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1613 300 53 0 0 chr6 134769516 134769554 -14747483 + (ATG)n Simple_repeat Simple_repeat 2 39 0 6 1613 334 96 342 0 chr6 134769600 134769673 -14747364 + B1_Mur4 SINE Alu 2 99 -51 6 1613 1085 15 0 8 chr6 134769700 134769832 -14747205 + (GGGAGA)n Simple_repeat Simple_repeat 3 133 0 6 1613 339 218 51 0 chr6 134769877 134769955 -14747082 + ID SINE ID 3 84 -140 6 1613 245 259 156 11 chr6 134770093 134770183 -14746854 - PB1D7 SINE Alu -8 112 10 6 1613 2335 237 97 22 chr6 134770282 134771290 -14745747 - Lx8 LINE L1 -10 7463 6380 7 1613 607 67 56 0 chr6 134771360 134771449 -14745588 + B2_Mm2 SINE B2 1 94 -101 7 1613 21 36 0 0 chr6 134771451 134771479 -14745558 + AT_rich Low_complexity Low_complexity 1 28 0 7 1613 519 153 12 0 chr6 134771634 134771719 -14745318 - BC1_Mm scRNA scRNA -66 86 1 7 1613 355 219 32 15 chr6 134771852 134771958 -14745079 + B1F SINE Alu 10 148 -1 7 1613 355 247 54 0 chr6 134772215 134772308 -14744729 - ID_B1 SINE B4 -6 218 121 7 1613 325 267 92 33 chr6 134772308 134772335 -14744702 - B1F2 SINE Alu -6 143 17 7 1613 301 301 32 0 chr6 134772342 134772435 -14744602 - B1F1 SINE Alu -52 97 2 7 1613 1124 34 0 0 chr6 134772810 134772956 -14744081 - B1_Mus2 SINE Alu 0 147 2 7 1613 648 233 20 80 chr6 134772977 134773093 -14743944 - B3A SINE B2 0 216 111 7 1613 1056 168 119 0 chr6 134773093 134773295 -14743742 + URR1A DNA MER1_type 1 226 0 7 1613 648 226 16 78 chr6 134773295 134773404 -14743633 - B3A SINE B2 -86 112 3 7 1613 521 266 8 8 chr6 134773470 134773599 -14743438 - B1_Mur1 SINE Alu -20 129 1 7 1613 274 304 0 12 chr6 134773534 134773614 -14743423 - B4 SINE B4 -142 150 72 7 1613 410 295 9 0 chr6 134773620 134773732 -14743305 - PB1D7 SINE Alu -7 113 1 7 1613 660 254 5 22 chr6 134773804 134773981 -14743056 + ID_B1 SINE B4 42 216 -8 7 1613 654 79 0 0 chr6 134773981 134774070 -14742967 + (GGGA)n Simple_repeat Simple_repeat 4 92 0 7 1613 280 298 118 84 chr6 134774070 134774093 -14742944 + B4A SINE B4 219 252 -40 7 1613 878 186 43 33 chr6 134774093 134774304 -14742733 - B3 SINE B2 0 216 4 7 1613 280 298 118 84 chr6 134774304 134774344 -14742693 + B4A SINE B4 253 291 -1 7 1613 830 294 87 28 chr6 134774345 134774734 -14742303 - L1MA4 LINE L1 -368 5932 5521 7 1613 476 278 7 22 chr6 134774873 134775001 -14742036 - B4A SINE B4 -43 249 124 7 1613 2034 133 98 3 chr6 134775001 134775378 -14741659 + MTC LTR MaLR 1 413 -8 7 1613 320 331 33 0 chr6 134775382 134775503 -14741534 - B4A SINE B4 -167 125 1 7 1613 365 184 50 20 chr6 134775511 134775611 -14741426 - B1F2 SINE Alu 0 149 47 7 1613 522 242 8 31 chr6 134775635 134775763 -14741274 - B1F SINE Alu -8 141 17 7 1613 206 163 0 39 chr6 134775791 134775842 -14741195 + CT-rich Low_complexity Low_complexity 2 50 0 7 1613 210 37 0 0 chr6 134776078 134776105 -14740932 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 1613 215 262 66 0 chr6 134776717 134776778 -14740259 + ID4 SINE ID 16 80 -3 7 1613 395 83 17 0 chr6 134776846 134776906 -14740131 + (TCC)n Simple_repeat Simple_repeat 1 61 0 7 1613 237 247 108 24 chr6 134776909 134776992 -14740045 + PB1D10 SINE Alu 27 116 -1 7 1613 439 264 0 7 chr6 134777135 134777253 -14739784 - B1F SINE Alu -34 115 1 7 1613 224 59 29 0 chr6 134777276 134777310 -14739727 + (TCC)n Simple_repeat Simple_repeat 3 37 0 7 1613 371 241 42 9 chr6 134777328 134777438 -14739599 - ID_B1 SINE B4 -165 127 10 7 1613 377 103 0 14 chr6 134777587 134777656 -14739381 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1613 844 35 57 0 chr6 134777656 134777797 -14739240 + (GA)n Simple_repeat Simple_repeat 2 150 0 7 1613 1343 46 11 0 chr6 134777802 134777976 -14739061 + (GGAGA)n Simple_repeat Simple_repeat 2 177 0 7 1613 645 219 0 17 chr6 134777977 134778093 -14738944 - RSINE1 SINE B4 -50 115 2 7 1613 991 193 44 5 chr6 134778402 134778605 -14738432 + B3 SINE B2 1 211 -5 7 1613 351 308 3 2 chr6 134778646 134778758 -14738279 + B1F2 SINE Alu 2 114 -6 7 1613 367 277 43 43 chr6 134778777 134778894 -14738143 + B4A SINE B4 55 171 -121 7 1613 230 322 56 33 chr6 134778822 134778912 -14738125 + PB1D7 SINE Alu 20 111 -9 7 1613 613 225 122 59 chr6 134779191 134779446 -14737591 - L1MB7 LINE L1 -69 6115 5845 7 1613 353 202 284 17 chr6 134779480 134779596 -14737441 - B1_Mus1 SINE Alu -1 147 1 7 1613 478 244 67 62 chr6 134779596 134779775 -14737262 - L1MB7 LINE L1 -456 5728 5549 7 1613 22 35 0 0 chr6 134780365 134780394 -14736643 + GC_rich Low_complexity Low_complexity 1 29 0 7 1613 216 97 0 0 chr6 134780758 134780789 -14736248 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1613 225 0 0 0 chr6 134781026 134781051 -14735986 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1613 461 217 46 28 chr6 134781316 134781425 -14735612 - ID_B1 SINE B4 -5 219 109 7 1613 252 281 29 186 chr6 134781425 134781450 -14735587 - PB1D7 SINE Alu -1 100 2 7 1613 800 246 22 31 chr6 134782181 134782403 -14734634 - ID_B1 SINE B4 -4 220 1 7 1613 1550 98 5 5 chr6 134782472 134782716 -14734321 - ORR1A2 LTR MaLR 0 327 1 7 1613 268 355 63 19 chr6 134782991 134783149 -14733888 + MIRb SINE MIR 103 267 -1 7 1613 427 306 19 0 chr6 134784074 134784182 -14732855 + ID_B1 SINE B4 80 189 -35 7 1613 467 237 64 42 chr6 134784453 134784609 -14732428 + PB1D9 SINE Alu 2 148 -1 7 1613 315 351 17 26 chr6 134785268 134785385 -14731652 + ID_B1 SINE B4 79 194 -30 7 1613 409 299 20 6 chr6 134785294 134785403 -14731634 + B1F SINE Alu 24 130 -18 7 1613 804 184 139 46 chr6 134785604 134785798 -14731239 + B3 SINE B2 1 212 -4 7 1613 23 33 0 0 chr6 134785832 134785862 -14731175 + AT_rich Low_complexity Low_complexity 1 30 0 7 1613 450 277 26 43 chr6 134787015 134787132 -14729905 - RSINE1 SINE B4 -13 152 38 7 1613 363 208 62 23 chr6 134787157 134787285 -14729752 - L1MB7 LINE L1 -2 6182 6050 7 1613 704 263 69 62 chr6 134787307 134787627 -14729410 + L1MC2 LINE L1 5784 6105 -239 7 1613 516 225 110 0 chr6 134787708 134787881 -14729156 - L1M4 LINE L1 -814 5332 5141 7 1613 614 230 16 50 chr6 134787881 134788047 -14728990 - B3 SINE B2 -40 155 5 7 1613 1347 239 91 25 chr6 134788059 134788467 -14728570 - L1M4 LINE L1 -1786 4360 3926 7 1613 186 43 0 0 chr6 134789447 134789470 -14727567 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1613 3577 18 2 0 chr6 134789568 134789963 -14727074 - MTA_Mm LTR MaLR 0 396 1 7 1613 370 243 58 139 chr6 134790284 134790456 -14726581 - B4A SINE B4 0 292 135 7 1613 461 291 7 36 chr6 134790436 134790575 -14726462 - B1_Mus2 SINE Alu -12 135 1 7 1613 932 220 47 5 chr6 134790575 134790646 -14726391 - ID SINE ID -144 80 2 7 1613 399 200 43 22 chr6 134790648 134790740 -14726297 - PB1D10 SINE Alu 0 117 24 7 1613 346 278 71 44 chr6 134790823 134790936 -14726101 - PB1D10 SINE Alu 0 117 2 7 1613 324 70 0 0 chr6 134791014 134791057 -14725980 + (CATA)n Simple_repeat Simple_repeat 2 44 0 7 1613 460 204 109 18 chr6 134791183 134791348 -14725689 - L1M4 LINE L1 -3034 3112 2933 7 1613 3062 76 10 0 chr6 134791349 134791745 -14725292 + MTB LTR MaLR 1 400 0 7 1613 345 246 58 116 chr6 134791827 134791847 -14725190 + MT2B LTR ERVL 147 158 -443 7 1613 803 152 50 14 chr6 134791847 134791987 -14725050 + B1_Mur3 SINE Alu 2 146 -3 7 1613 324 0 0 0 chr6 134792122 134792158 -14724879 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1613 1105 73 0 0 chr6 134792158 134792295 -14724742 - B1_Mus2 SINE Alu -9 138 2 7 1613 959 134 35 0 chr6 134792299 134792441 -14724596 - B1_Mus1 SINE Alu -1 147 1 7 1613 502 258 141 25 chr6 134792669 134792832 -14724205 - B3A SINE B2 -16 182 1 7 1613 826 236 61 51 chr6 134793177 134793391 -14723646 + B3 SINE B2 1 216 0 7 1613 533 304 26 45 chr6 134793691 134793846 -14723191 - RSINE1 SINE B4 -13 152 1 7 1613 1035 0 0 0 chr6 134793853 134793968 -14723069 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 7 1613 269 323 52 41 chr6 134793968 134794065 -14722972 - PB1D10 SINE Alu -14 103 6 7 1613 180 176 0 0 chr6 134794073 134794107 -14722930 + CT-rich Low_complexity Low_complexity 3 36 0 7 1613 394 250 54 27 chr6 134794114 134794225 -14722812 - PB1D7 SINE Alu -6 114 1 7 1613 214 260 0 0 chr6 134794239 134794289 -14722748 - ID4 SINE ID -32 51 2 7 1613 1129 44 7 0 chr6 134794599 134794736 -14722301 + B1_Mus2 SINE Alu 1 138 -9 7 1613 895 231 49 16 chr6 134794756 134794941 -14722096 - B3 SINE B2 -25 191 1 7 1613 280 379 28 21 chr6 134795251 134795268 -14721769 - B4 SINE B4 -69 223 154 7 1613 650 173 0 9 chr6 134795268 134795379 -14721658 - PB1D9 SINE Alu -4 116 7 7 1613 300 279 16 139 chr6 134795287 134795416 -14721621 - MT2B LTR ERVL -350 251 139 7 1613 280 379 28 21 chr6 134795379 134795394 -14721643 - B4 SINE B4 -69 153 80 7 1613 4117 152 58 73 chr6 134796224 134796858 -14720179 - RMER13B LTR ERVK -57 851 235 7 1613 1009 89 0 15 chr6 134796858 134796994 -14720043 + B1_Mus1 SINE Alu 3 136 -12 7 1613 4117 152 58 73 chr6 134796994 134797223 -14719814 - RMER13B LTR ERVK -674 234 1 7 1613 27 0 0 0 chr6 134797268 134797295 -14719742 + AT_rich Low_complexity Low_complexity 1 27 0 7 1613 1030 222 30 0 chr6 134798078 134798281 -14718756 + B3 SINE B2 2 210 -6 7 1613 958 216 53 10 chr6 134798328 134798534 -14718503 - B3 SINE B2 0 216 2 7 1613 466 320 0 52 chr6 134798598 134798753 -14718284 + B3A SINE B2 1 147 -51 7 1613 219 88 0 0 chr6 134798770 134798804 -14718233 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1613 28 48 0 0 chr6 134798874 134798916 -14718121 + AT_rich Low_complexity Low_complexity 1 42 0 7 1613 856 123 50 7 chr6 134799468 134799607 -14717430 - B1_Mur4 SINE Alu 0 150 6 7 1613 967 167 70 27 chr6 134799682 134799867 -14717170 + B2_Mm2 SINE B2 3 195 0 7 1613 877 230 49 0 chr6 134800095 134800299 -14716738 + ID_B1 SINE B4 1 214 -10 7 1613 534 188 231 0 chr6 134800675 134800792 -14716245 + ID_B1 SINE B4 78 221 -3 7 1613 271 304 172 67 chr6 134800805 134800985 -14716052 + B4 SINE B4 2 200 -92 7 1613 279 232 144 21 chr6 134801412 134801509 -14715528 + PB1D10 SINE Alu 2 110 -7 7 1613 657 118 74 16 chr6 134801732 134801853 -14715184 - URR1B DNA MER1_type 0 225 98 8 1613 864 142 49 14 chr6 134801853 134801996 -14715041 + B1_Mus1 SINE Alu 1 148 0 8 1613 241 151 38 0 chr6 134801996 134802049 -14714988 + A-rich Low_complexity Low_complexity 1 55 0 8 1613 857 270 109 29 chr6 134802369 134802670 -14714367 - L1MB5 LINE L1 -1 6179 5867 8 1613 1363 80 26 16 chr6 134802670 134802861 -14714176 - B2_Mm2 SINE B2 -1 194 2 8 1613 857 263 112 26 chr6 134802861 134803027 -14714010 - L1MB5 LINE L1 -307 5867 5686 8 1613 307 253 73 10 chr6 134803045 134803141 -14713896 - B1F1 SINE Alu -24 125 24 8 1613 416 254 39 16 chr6 134803065 134803193 -14713844 - ID_B1 SINE B4 -42 182 52 8 1613 499 263 16 41 chr6 134803285 134803408 -14713629 - PB1 SINE Alu 0 127 8 8 1613 226 253 18 144 chr6 134803310 134803421 -14713616 - ID_B1 SINE B4 -48 176 80 8 1613 592 173 18 105 chr6 134803442 134803624 -14713413 - B1_Mus2 SINE Alu -1 148 3 8 1613 582 266 6 43 chr6 134803701 134803862 -14713175 - RSINE1 SINE B4 0 165 11 8 1613 239 250 0 0 chr6 134803875 134803935 -14713102 - L1MB5 LINE L1 -755 5423 5364 8 1613 222 62 0 0 chr6 134803937 134803969 -14713068 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1613 330 194 44 44 chr6 134804034 134804147 -14712890 - PB1D10 SINE Alu 0 117 5 8 1613 4983 88 35 37 chr6 134804199 134804952 -14712085 - RMER17A LTR ERVK 0 751 1 8 1613 217 240 305 9 chr6 134805038 134805143 -14711894 + ID_B1 SINE B4 83 218 -6 8 1613 284 267 159 97 chr6 134805170 134805315 -14711722 + B4A SINE B4 13 166 -126 8 1613 510 188 113 21 chr6 134805351 134805492 -14711545 + B2_Mm2 SINE B2 2 155 -40 8 1613 853 85 17 0 chr6 134805397 134805515 -14711522 - B2_Mm1t SINE B2 -72 121 2 8 1613 884 118 41 14 chr6 134805515 134805622 -14711415 + B2_Mm2 SINE B2 49 154 -41 8 1613 612 0 0 0 chr6 134805622 134805690 -14711347 + (TAAA)n Simple_repeat Simple_repeat 3 70 0 8 1613 884 118 41 14 chr6 134805690 134805725 -14711312 + B2_Mm2 SINE B2 155 195 0 8 1613 293 271 42 14 chr6 134805752 134805823 -14711214 + RSINE1 SINE B4 78 150 -15 8 1613 432 0 0 0 chr6 134805826 134805874 -14711163 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1613 438 295 0 0 chr6 134807405 134807500 -14709537 + RMER30 DNA MER1_type 108 202 0 8 1613 214 222 119 36 chr6 134808997 134809081 -14707956 + RSINE1 SINE B4 38 128 -37 8 1613 345 228 22 0 chr6 134809089 134809178 -14707859 + B3A SINE B2 21 114 -81 8 1613 488 231 33 33 chr6 134809327 134809448 -14707589 + RSINE1 SINE B4 3 123 -42 8 1613 1271 104 33 0 chr6 134809532 134809714 -14707323 + B2_Mm1a SINE B2 1 188 -5 8 1613 269 330 20 20 chr6 134809908 134810010 -14707027 + MER91A DNA Tip100 3 104 -92 8 1613 264 315 73 18 chr6 134810173 134810283 -14706754 + MER63A DNA AcHobo 41 156 -54 8 1613 647 217 35 14 chr6 134810532 134810677 -14706360 - B1_Mur1 SINE Alu 0 149 2 8 1613 258 56 0 0 chr6 134810755 134810791 -14706246 + (GGCTG)n Simple_repeat Simple_repeat 5 40 0 8 1613 274 237 63 4 chr6 134811111 134811193 -14705844 + B1_Mur1 SINE Alu 36 149 0 8 1613 435 199 217 22 chr6 134811550 134811730 -14705307 + ID_B1 SINE B4 2 216 -8 8 1613 311 267 133 0 chr6 134811855 134811945 -14705092 - B4A SINE B4 -86 206 105 8 1613 244 294 120 0 chr6 134812287 134812308 -14704729 - PB1D7 SINE Alu 0 120 18 8 1613 325 296 0 0 chr6 134812308 134812379 -14704658 - ID_B1 SINE B4 -55 169 99 8 1613 288 0 0 0 chr6 134812402 134812434 -14704603 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1613 650 267 20 0 chr6 134812434 134812580 -14704457 - RSINE1 SINE B4 -15 150 2 8 1613 515 260 152 52 chr6 134812872 134813063 -14703974 + ID_B1 SINE B4 15 224 0 8 1613 25 31 0 0 chr6 134813571 134813603 -14703434 + AT_rich Low_complexity Low_complexity 1 32 0 8 1613 338 247 196 0 chr6 134813658 134813755 -14703282 - RSINE1 SINE B4 -42 123 8 8 1613 1582 49 0 0 chr6 134813873 134814058 -14702979 - B2_Mm1a SINE B2 -8 185 1 8 1613 985 136 208 6 chr6 134814077 134814255 -14702782 - B3 SINE B2 0 216 3 8 1613 552 209 102 22 chr6 134814278 134814415 -14702622 - B1F SINE Alu -1 148 1 8 1613 258 32 0 0 chr6 134814515 134814546 -14702491 + (TCC)n Simple_repeat Simple_repeat 3 33 0 8 1613 542 200 8 42 chr6 134814564 134814684 -14702353 + PB1D9 SINE Alu 5 120 0 8 1613 550 312 14 14 chr6 134814718 134814864 -14702173 + ID_B1 SINE B4 78 223 -1 8 1613 1348 236 146 3 chr6 134814903 134815239 -14701798 + MTD LTR MaLR 36 419 0 8 1613 477 0 0 0 chr6 134815277 134815330 -14701707 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1613 787 202 99 17 chr6 134815342 134815512 -14701525 + B3A SINE B2 1 186 -12 8 1613 540 45 0 0 chr6 134815512 134815579 -14701458 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 1613 787 218 212 77 chr6 134815579 134815612 -14701425 + B3A SINE B2 162 196 -2 8 1613 287 111 22 0 chr6 134815620 134815665 -14701372 + RLTR25B LTR ERVK 440 485 -543 8 1613 489 96 169 0 chr6 134815625 134815708 -14701329 + B1_Mus2 SINE Alu 44 140 -7 8 1613 442 192 39 29 chr6 134815975 134816077 -14700960 - B1F2 SINE Alu -34 115 13 8 1613 378 279 32 35 chr6 134816077 134816129 -14700908 - ID_B1 SINE B4 -86 205 42 8 1613 636 203 45 0 chr6 134816144 134816277 -14700760 - B1_Mur2 SINE Alu -9 140 2 8 1613 1602 47 0 10 chr6 134816682 134816877 -14700160 + B2_Mm1a SINE B2 1 193 0 8 1613 762 213 29 0 chr6 134817103 134817239 -14699798 - ID_B1 SINE B4 -2 222 83 8 1613 634 274 83 11 chr6 134817404 134817585 -14699452 + B3A SINE B2 2 195 -3 8 1613 347 259 189 27 chr6 134817856 134817967 -14699070 + RSINE1 SINE B4 6 134 -31 8 1613 1084 122 7 0 chr6 134818303 134818451 -14698586 + B1_Mur4 SINE Alu 2 150 0 8 1613 227 115 0 103 chr6 134818451 134818509 -14698528 + A-rich Low_complexity Low_complexity 1 52 0 8 1613 460 248 50 50 chr6 134818647 134818766 -14698271 - RSINE1 SINE B4 -1 164 46 8 1613 949 204 78 0 chr6 134818837 134819028 -14698009 - B3 SINE B2 -9 207 2 8 1613 671 288 90 11 chr6 134820835 134821112 -14695925 - L1MA4 LINE L1 -370 5930 5632 8 1613 256 327 9 65 chr6 134821324 134821432 -14695605 - RMER12 LTR ERVK -501 821 720 8 1613 307 315 43 43 chr6 134821459 134821471 -14695566 - RSINE1 SINE B4 -70 95 3 8 1613 473 185 0 0 chr6 134821471 134821552 -14695485 - B3A SINE B2 -116 82 2 8 1613 508 288 54 30 chr6 134821580 134821748 -14695289 - B4 SINE B4 -120 172 1 8 1613 404 299 21 56 chr6 134821930 134822072 -14694965 - MER5B DNA MER1_type -8 170 34 8 1613 762 103 0 0 chr6 134822072 134822179 -14694858 + B2_Mm2 SINE B2 1 107 -88 8 1613 228 233 0 0 chr6 134822260 134822303 -14694734 - MER5B DNA MER1_type -129 49 7 8 1613 195 195 23 47 chr6 134822321 134822364 -14694673 + L2b LINE L2 3233 3274 -101 8 1613 286 231 14 58 chr6 134822898 134822967 -14694070 - ID4_ SINE ID -11 72 7 8 1613 569 249 36 109 chr6 134822966 134823187 -14693850 + LTR37B LTR ERV1 71 275 -193 8 1613 1074 111 63 53 chr6 134823214 134823404 -14693633 - B2_Mm2 SINE B2 -1 194 3 8 1613 269 286 47 23 chr6 134823404 134823490 -14693547 + B4 SINE B4 199 286 -6 8 1613 281 313 59 35 chr6 134823577 134823746 -14693291 + LTR37B LTR ERV1 287 459 -9 8 1613 606 207 0 8 chr6 134823817 134823934 -14693103 + PB1D9 SINE Alu 5 120 0 8 1613 661 321 32 27 chr6 134824070 134824370 -14692667 + B4A SINE B4 8 291 -1 8 1613 1222 35 7 0 chr6 134824528 134824673 -14692364 - B1_Mm SINE Alu 0 147 2 8 1613 216 258 62 31 chr6 134824704 134824768 -14692269 + B4A SINE B4 81 146 -146 8 1613 373 228 109 0 chr6 134824719 134824811 -14692226 + PB1D10 SINE Alu 9 110 -7 8 1613 822 207 18 30 chr6 134825330 134825499 -14691538 + Lx8 LINE L1 7175 7341 -132 8 1613 1201 66 0 7 chr6 134825537 134825692 -14691345 + B2_Mm2 SINE B2 2 155 -38 8 1613 243 0 0 0 chr6 134825692 134825719 -14691318 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 1613 1101 143 5 16 chr6 134825719 134825748 -14691289 + B2_Mm1a SINE B2 156 184 -9 8 1613 389 190 165 0 chr6 134825996 134826075 -14690962 + B1F2 SINE Alu 6 97 -52 8 1613 354 330 42 8 chr6 134826077 134826196 -14690841 + RSINE1 SINE B4 43 165 0 8 1613 1580 38 0 5 chr6 134826264 134826451 -14690586 - B2_Mm1a SINE B2 -6 187 2 8 1613 802 148 26 90 chr6 134826458 134826614 -14690423 - B1_Mur4 SINE Alu -4 146 1 8 1613 325 336 41 35 chr6 134827194 134827339 -14689698 + RSINE1 SINE B4 2 147 -18 8 1613 1274 76 41 0 chr6 134827425 134827597 -14689440 + B2_Mm1t SINE B2 1 179 -14 8 1613 327 155 0 22 chr6 134827644 134827710 -14689327 + B2_Mm2 SINE B2 47 109 -107 8 1613 441 0 0 0 chr6 134827718 134827767 -14689270 + (CATA)n Simple_repeat Simple_repeat 2 50 0 8 1613 21 0 0 0 chr6 134827769 134827790 -14689247 + AT_rich Low_complexity Low_complexity 1 21 0 8 1613 333 0 0 0 chr6 134827906 134827943 -14689094 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 8 1613 616 202 0 40 chr6 134828048 134828172 -14688865 + B1_Mur1 SINE Alu 17 135 -14 8 1613 477 0 0 0 chr6 134828172 134828225 -14688812 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 8 1613 582 239 41 31 chr6 134828295 134828489 -14688548 + L1M2 LINE L1 2709 2904 -3239 8 1613 303 259 153 0 chr6 134828523 134828554 -14688483 - PB1D10 SINE Alu -1 116 19 8 1613 315 185 0 0 chr6 134828554 134828608 -14688429 - ID_B1 SINE B4 -71 153 100 8 1613 312 323 31 20 chr6 134828612 134828710 -14688327 + B1F SINE Alu 29 127 -22 8 1613 307 222 0 0 chr6 134828705 134828768 -14688269 + B1F SINE Alu 65 127 -22 9 1613 363 233 0 33 chr6 134828764 134828870 -14688167 + B1F SINE Alu 47 149 0 9 1613 1057 276 85 105 chr6 134828911 134829689 -14687348 + L1M2 LINE L1 3921 4682 -1461 8 1613 396 0 0 0 chr6 134829728 134829772 -14687265 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1613 415 174 152 0 chr6 134829781 134829873 -14687164 + RSINE1 SINE B4 41 146 -19 9 1613 758 283 42 4 chr6 134829958 134830199 -14686838 + L1M2 LINE L1 4845 5094 -1049 8 1613 1244 183 164 26 chr6 134830220 134830568 -14686469 + MTD LTR MaLR 22 417 -2 9 1613 586 242 71 76 chr6 134830608 134830805 -14686232 + B3A SINE B2 3 198 0 9 1613 347 300 7 3 chr6 134831765 134832061 -14684976 + (TATG)n Simple_repeat Simple_repeat 1 297 0 9 1613 259 281 0 19 chr6 134832073 134832229 -14684808 + (TATATG)n Simple_repeat Simple_repeat 1 153 0 9 1613 526 250 136 61 chr6 134832292 134832556 -14684481 - B4 SINE B4 -8 284 1 9 1613 593 279 29 0 chr6 134832586 134832726 -14684311 - ID_B1 SINE B4 -1 223 80 9 1613 485 234 177 0 chr6 134832849 134832973 -14684064 + MER20 DNA MER1_type 1 146 -73 9 1613 269 257 233 0 chr6 134833009 134833137 -14683900 + MIR SINE MIR 31 193 -75 9 1613 338 179 16 0 chr6 134833152 134833222 -14683815 + B4A SINE B4 81 151 -73 9 1613 291 279 37 2 chr6 134833223 134833321 -14683716 + B3A SINE B2 103 203 -13 9 1613 1039 204 16 5 chr6 134833424 134833611 -14683426 - B3 SINE B2 -27 189 1 9 1613 326 287 89 0 chr6 134833712 134833833 -14683204 + MIRb SINE MIR 45 183 -85 9 1613 570 255 36 7 chr6 134835159 134835297 -14681740 + ID_B1 SINE B4 80 221 -3 9 1613 296 277 84 56 chr6 134835617 134835724 -14681313 - B1F1 SINE Alu -38 111 2 9 1613 210 293 54 185 chr6 134835734 134835813 -14681224 - B3A SINE B2 -5 193 1 9 1613 401 264 126 21 chr6 134835813 134835956 -14681081 - B4A SINE B4 -134 158 1 9 1613 380 302 32 39 chr6 134835974 134836036 -14681001 + ID_B1 SINE B4 39 219 -4 9 1613 708 160 16 25 chr6 134836036 134836158 -14680879 + B1_Mus2 SINE Alu 22 142 -5 9 1613 310 297 99 0 chr6 134836266 134836357 -14680680 - B1F SINE Alu -46 103 4 9 1613 271 369 24 8 chr6 134836753 134836876 -14680161 + MIR SINE MIR 2 126 -136 9 1613 268 310 73 52 chr6 134839338 134839474 -14677563 - Charlie13a DNA Charlie -566 948 810 9 1613 348 283 30 0 chr6 134839643 134839742 -14677295 - PB1D10 SINE Alu -11 106 5 9 1613 508 281 68 0 chr6 134839944 134840053 -14676984 + RSINE1 SINE B4 10 125 -40 9 1613 248 0 31 0 chr6 134840053 134840085 -14676952 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1613 508 281 68 0 chr6 134840085 134840121 -14676916 + RSINE1 SINE B4 126 164 -1 9 1613 749 318 18 0 chr6 134840425 134840648 -14676389 + B4A SINE B4 2 228 -64 9 1613 423 87 0 0 chr6 134840669 134840738 -14676299 + (CA)n Simple_repeat Simple_repeat 1 69 0 9 1613 842 209 53 11 chr6 134840738 134840927 -14676110 + MTEa LTR MaLR 183 379 0 9 1613 456 227 73 36 chr6 134841150 134841287 -14675750 - ID_B1 SINE B4 -6 218 77 9 1613 22 0 0 0 chr6 134841351 134841373 -14675664 + AT_rich Low_complexity Low_complexity 1 22 0 9 1613 620 239 170 0 chr6 134841390 134841549 -14675488 - B3 SINE B2 -27 189 4 9 1613 360 159 0 42 chr6 134841795 134841867 -14675170 - ID_B1 SINE B4 -2 222 154 9 1613 254 254 0 29 chr6 134841886 134841955 -14675082 - ID4_ SINE ID -16 67 1 9 1613 662 185 65 58 chr6 134842534 134842672 -14674365 - B1_Mur4 SINE Alu -10 140 2 9 1613 4332 118 42 17 chr6 134842707 134843406 -14673631 - RMER6D LTR ERVK -4 716 1 9 1613 300 278 0 0 chr6 134843551 134843623 -14673414 - tRNA-Ala-GCA tRNA tRNA -3 72 1 9 1613 441 219 107 25 chr6 134843780 134843902 -14673135 + RSINE1 SINE B4 28 159 -6 9 1613 756 231 35 6 chr6 134844044 134844218 -14672819 + B3A SINE B2 2 180 -18 9 1613 242 354 105 61 chr6 134844397 134844586 -14672451 + B4A SINE B4 1 183 -109 9 1613 216 212 0 0 chr6 134845286 134845319 -14671718 + PB1D9 SINE Alu 5 37 -83 9 1613 344 144 14 19 chr6 134845495 134845576 -14671461 + PB1D9 SINE Alu 46 127 0 9 1613 605 237 94 64 chr6 134845595 134845798 -14671239 + B3 SINE B2 2 210 -6 9 1613 275 341 67 11 chr6 134846175 134846264 -14670773 - PB1 SINE Alu -33 94 1 9 1613 537 16 0 0 chr6 134846577 134846639 -14670398 + (GA)n Simple_repeat Simple_repeat 2 63 0 9 1613 1185 250 73 7 chr6 134846640 134846942 -14670095 + MER2 DNA MER2_type 2 323 -22 9 1613 502 236 224 6 chr6 134849365 134849544 -14667493 + ID_B1 SINE B4 6 223 -1 9 1613 528 255 3 10 chr6 134849757 134849873 -14667164 - PB1D10 SINE Alu -29 120 11 9 1613 245 187 87 125 chr6 134849788 134849892 -14667145 + YREP_Mm Unknown Unknown 223 322 -1490 9 1613 748 244 44 6 chr6 134849956 134850137 -14666900 + B3 SINE B2 1 188 -28 9 1613 219 294 59 0 chr6 134850209 134850277 -14666760 + PB1D10 SINE Alu 40 111 -6 9 1613 613 323 0 6 chr6 134850328 134850487 -14666550 + RSINE1 SINE B4 3 160 -5 9 1613 518 162 111 51 chr6 134850970 134851087 -14665950 + B1F2 SINE Alu 9 132 -17 9 1613 396 0 0 0 chr6 134851089 134851133 -14665904 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 9 1613 215 188 212 30 chr6 134851165 134851220 -14665817 + B1_Mur2 SINE Alu 70 136 -13 9 1613 477 0 0 0 chr6 134851220 134851273 -14665764 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 9 1613 347 194 222 0 chr6 134851563 134851635 -14665402 + PB1D10 SINE Alu 3 90 -27 9 1613 373 265 59 0 chr6 134851839 134851941 -14665096 + PB1D10 SINE Alu 1 108 -9 9 1613 308 285 197 61 chr6 134852160 134852242 -14664795 + Charlie5 DNA MER1_type 2364 2466 -158 9 1613 562 197 43 43 chr6 134852242 134852380 -14664657 + B1F2 SINE Alu 1 138 -11 9 1613 308 285 197 61 chr6 134852380 134852525 -14664512 + Charlie5 DNA MER1_type 2467 2621 -3 9 1613 356 315 27 34 chr6 134852667 134852815 -14664222 + B1F SINE Alu 3 149 0 9 1613 240 293 66 13 chr6 134852818 134852894 -14664143 + ID4_ SINE ID 2 81 -2 9 1613 276 30 0 0 chr6 134852996 134853029 -14664008 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1613 571 274 0 16 chr6 134853088 134853214 -14663823 - B1F SINE Alu -2 147 24 9 1613 582 54 0 0 chr6 134853238 134853312 -14663725 + (TCC)n Simple_repeat Simple_repeat 3 76 0 9 1613 1202 62 0 0 chr6 134853328 134853474 -14663563 + B1_Mus2 SINE Alu 2 147 0 9 1613 229 378 26 35 chr6 134853579 134853694 -14663343 - Tigger9a DNA Tigger -349 383 270 9 1613 425 235 9 38 chr6 134853811 134853917 -14663120 - B1F1 SINE Alu -34 115 13 9 1613 285 298 32 32 chr6 134853917 134853936 -14663101 - ID_B1 SINE B4 -31 193 69 9 1613 832 225 36 77 chr6 134854151 134854372 -14662665 - B3 SINE B2 0 216 5 9 1613 439 296 23 23 chr6 134854454 134854582 -14662455 + B1F1 SINE Alu 17 144 -5 9 1613 3044 122 0 7 chr6 134854583 134855019 -14662018 + RLTR10C LTR ERVK 1 433 -3 9 1613 3223 177 58 51 chr6 134855414 134856122 -14660915 - Lx5 LINE L1 -9 7041 6329 9 1613 269 26 0 26 chr6 134856139 134856178 -14660859 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 9 1613 1460 71 5 0 chr6 134856183 134856367 -14660670 - B2_Mm1a SINE B2 -8 185 1 9 1613 968 102 0 7 chr6 134856367 134856505 -14660532 - B2_Mm1a SINE B2 -5 188 52 9 1613 450 0 0 0 chr6 134856529 134856579 -14660458 + (TC)n Simple_repeat Simple_repeat 2 51 0 9 1613 515 256 25 25 chr6 134856614 134856734 -14660303 - RSINE1 SINE B4 -44 121 2 9 1613 740 236 0 7 chr6 134857220 134857369 -14659668 - B1_Mus1 SINE Alu 0 148 1 9 1613 3247 58 0 8 chr6 134857415 134857814 -14659223 - MTA_Mm LTR MaLR 0 396 1 9 1613 1053 232 5 9 chr6 134857968 134858185 -14658852 - B3 SINE B2 0 216 1 9 1613 294 48 0 0 chr6 134858324 134858366 -14658671 + B3 SINE B2 166 207 -9 9 1613 261 83 0 0 chr6 134858367 134858403 -14658634 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 9 1613 473 258 41 8 chr6 134858505 134858626 -14658411 - ID_B1 SINE B4 -24 200 76 9 1613 862 158 7 27 chr6 134858778 134858928 -14658109 + B1_Mus2 SINE Alu 1 147 0 9 1613 1002 211 59 0 chr6 134858976 134859180 -14657857 - B3 SINE B2 0 216 1 9 1613 420 224 0 39 chr6 134859659 134859761 -14657276 + B1F1 SINE Alu 52 149 0 9 1613 601 254 0 0 chr6 134859964 134860086 -14656951 + ID_B1 SINE B4 99 220 -4 9 1613 244 167 0 57 chr6 134860087 134860157 -14656880 + T-rich Low_complexity Low_complexity 5 70 0 9 1613 911 150 0 7 chr6 134860158 134860306 -14656731 - B1_Mus1 SINE Alu -1 147 1 9 1613 456 279 81 0 chr6 134860318 134860454 -14656583 - B1F SINE Alu -2 147 1 9 1613 556 304 36 7 chr6 134860512 134860651 -14656386 + ID_B1 SINE B4 81 223 -1 9 1613 299 296 12 0 chr6 134860740 134860821 -14656216 - ID4_ SINE ID 0 83 2 9 1613 768 22 0 0 chr6 134860913 134861003 -14656034 + (TG)n Simple_repeat Simple_repeat 2 91 0 9 1613 201 74 0 0 chr6 134861084 134861111 -14655926 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1613 579 190 136 32 chr6 134861111 134861135 -14655902 - B1_Mur3 SINE Alu -11 138 98 9 1613 207 0 0 0 chr6 134861135 134861158 -14655879 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 9 1613 579 190 136 32 chr6 134861158 134861258 -14655779 - B1_Mur3 SINE Alu -52 97 2 9 1613 182 238 141 12 chr6 134861296 134861381 -14655656 + L2a LINE L2 2042 2137 -1282 9 1613 355 266 67 82 chr6 134861472 134861607 -14655430 - B1F SINE Alu -16 133 1 9 1613 370 329 87 0 chr6 134861607 134861756 -14655281 + L2a LINE L2 2299 2460 -959 9 1613 1156 83 101 0 chr6 134861763 134861932 -14655105 + B2_Mm2 SINE B2 1 186 -9 1 1613 233 340 0 0 chr6 134861953 134862003 -14655034 - B4A SINE B4 -158 134 85 1 1613 617 313 105 85 chr6 134862024 134862924 -14654113 + L2a LINE L2 2481 3426 0 9 1613 831 268 14 0 chr6 134863363 134863576 -14653461 - B3 SINE B2 0 216 1 1 1613 574 143 36 62 chr6 134863577 134863689 -14653348 - B1F SINE Alu -1 148 40 1 1613 438 304 12 54 chr6 134863821 134863988 -14653049 - RSINE1 SINE B4 -4 161 2 1 1613 1209 28 0 27 chr6 134865215 134865363 -14651674 - B1_Mus1 SINE Alu -4 144 1 1 1613 220 276 54 54 chr6 134865374 134865466 -14651571 - B2_Mm1t SINE B2 -9 184 93 1 1613 316 219 144 10 chr6 134866120 134866217 -14650820 + PB1D7 SINE Alu 9 118 -2 1 1613 200 111 22 0 chr6 134866488 134866533 -14650504 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 1 1613 195 129 0 0 chr6 134867157 134867188 -14649849 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1613 273 275 36 48 chr6 134867574 134867658 -14649379 - B1F SINE Alu 0 149 67 1 1613 385 247 0 0 chr6 134867587 134867660 -14649377 - ID_B1 SINE B4 -9 215 143 1 1613 396 338 30 54 chr6 134867828 134867994 -14649043 + RSINE1 SINE B4 2 163 -2 1 1613 483 322 51 32 chr6 134868033 134868190 -14648847 - RSINE1 SINE B4 -3 162 3 1 1613 408 231 33 11 chr6 134868253 134868345 -14648692 - ID_B1 SINE B4 -1 223 130 1 1613 280 161 217 24 chr6 134868354 134868437 -14648600 + PB1 SINE Alu 29 127 0 1 1613 206 291 151 0 chr6 134868786 134868872 -14648165 + MIRb SINE MIR 70 168 -100 1 1613 344 161 16 0 chr6 134868895 134868957 -14648080 + HAL1-3A_ME LINE L1 1956 2018 -840 1 1613 270 0 0 0 chr6 134868983 134869013 -14648024 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1613 24 0 0 0 chr6 134870308 134870332 -14646705 + GC_rich Low_complexity Low_complexity 1 24 0 1 1613 189 0 0 0 chr6 134871438 134871459 -14645578 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 1 1613 231 36 0 0 chr6 134871731 134871759 -14645278 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 1 1613 813 163 0 58 chr6 134872634 134872790 -14644247 - B1_Mur3 SINE Alu 0 149 3 1 1614 1084 165 4 70 chr6 134873832 134874060 -14642977 - MER20 DNA MER1_type -2 217 5 1 1614 207 0 0 0 chr6 134875130 134875153 -14641884 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1614 241 118 78 0 chr6 134875648 134875699 -14641338 + G-rich Low_complexity Low_complexity 1 55 0 1 1614 25 31 0 0 chr6 134876180 134876212 -14640825 + AT_rich Low_complexity Low_complexity 1 32 0 1 1614 22 0 0 0 chr6 134877940 134877962 -14639075 + AT_rich Low_complexity Low_complexity 1 22 0 1 1614 239 190 0 17 chr6 134878521 134878580 -14638457 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1614 21 0 0 0 chr6 134878918 134878939 -14638098 + AT_rich Low_complexity Low_complexity 1 21 0 1 1614 22 0 0 0 chr6 134879089 134879111 -14637926 + GC_rich Low_complexity Low_complexity 1 22 0 1 1614 614 215 0 0 chr6 134880242 134880363 -14636674 + ID_B1 SINE B4 87 207 -17 1 1614 502 273 28 14 chr6 134880363 134880383 -14636654 + B1F SINE Alu 6 148 -1 1 1614 360 212 0 91 chr6 134880410 134880421 -14636616 + ID_B1 SINE B4 78 157 -67 1 1614 481 195 0 0 chr6 134880421 134880498 -14636539 + B1_Mur3 SINE Alu 3 79 -70 1 1614 656 284 32 55 chr6 134880716 134880936 -14636101 + B4A SINE B4 1 215 -77 1 1614 248 327 42 93 chr6 134881430 134881548 -14635489 - ID_B1 SINE B4 -31 193 82 1 1614 606 196 98 0 chr6 134881647 134881780 -14635257 + ID_B1 SINE B4 2 147 -77 1 1614 360 256 0 0 chr6 134881782 134881954 -14635083 + GA-rich Low_complexity Low_complexity 2 173 0 1 1614 205 0 0 158 chr6 134881954 134882055 -14634982 + (CAGAG)n Simple_repeat Simple_repeat 1 85 0 1 1614 482 180 19 29 chr6 134882058 134882161 -14634876 + ID_B1 SINE B4 123 224 0 1 1614 368 258 177 0 chr6 134882296 134882420 -14634617 + ID_B1 SINE B4 79 224 0 1 1614 412 236 169 8 chr6 134882691 134882815 -14634222 - ID_B1 SINE B4 0 224 81 1 1614 361 264 0 4 chr6 134883453 134883531 -14633506 - ID4 SINE ID -76 76 1 1 1614 526 300 12 42 chr6 134883779 134883945 -14633092 + ID_B1 SINE B4 84 246 -46 1 1614 204 97 0 0 chr6 134883945 134883976 -14633061 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 1 1614 331 333 61 20 chr6 134884158 134884305 -14632732 + RSINE1 SINE B4 2 154 -11 1 1614 180 0 0 0 chr6 134884310 134884330 -14632707 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1614 594 280 107 33 chr6 134884478 134884748 -14632289 - B4A SINE B4 -2 290 1 1 1614 321 309 45 51 chr6 134884760 134884917 -14632120 + L1M4 LINE L1 4980 5135 -1011 1 1614 194 91 0 29 chr6 134884921 134884955 -14632082 + (GGAAA)n Simple_repeat Simple_repeat 4 36 0 1 1614 600 227 32 92 chr6 134884999 134885188 -14631849 - B3A SINE B2 -7 188 2 1 1614 323 207 11 11 chr6 134885188 134885276 -14631761 + L1MB3 LINE L1 6086 6173 -10 1 1614 1034 107 6 0 chr6 134885287 134885446 -14631591 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 1 1614 614 246 63 17 chr6 134885454 134885628 -14631409 + B3A SINE B2 1 182 -16 1 1614 44 35 0 0 chr6 134885649 134885707 -14631330 + AT_rich Low_complexity Low_complexity 1 58 0 1 1614 243 234 78 0 chr6 134885835 134885899 -14631138 - PB1D10 SINE Alu -5 112 44 1 1614 1248 48 0 0 chr6 134885991 134886138 -14630899 + B1_Mus2 SINE Alu 1 147 0 1 1614 411 290 0 0 chr6 134886260 134886353 -14630684 + ID_B1 SINE B4 121 213 -11 1 1614 528 216 104 0 chr6 134886514 134886648 -14630389 - B1F1 SINE Alu -1 148 1 1 1614 390 241 92 15 chr6 134886649 134886769 -14630268 - PB1D7 SINE Alu -21 128 1 1 1614 21 57 0 0 chr6 134886836 134886871 -14630166 + AT_rich Low_complexity Low_complexity 1 35 0 1 1614 493 269 41 32 chr6 134887041 134887164 -14629873 + PB1D10 SINE Alu 4 127 -21 1 1614 207 140 33 66 chr6 134887292 134887353 -14629684 + A-rich Low_complexity Low_complexity 2 60 0 1 1614 23 0 0 0 chr6 134887745 134887768 -14629269 + AT_rich Low_complexity Low_complexity 1 23 0 1 1614 497 195 17 28 chr6 134887922 134888101 -14628936 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 1 1614 360 221 8 23 chr6 134888115 134888245 -14628792 + (CATA)n Simple_repeat Simple_repeat 3 130 0 1 1614 1438 45 73 0 chr6 134888247 134888425 -14628612 - B2_Mm2 SINE B2 -3 192 2 1 1614 2734 45 3 3 chr6 134888513 134888851 -14628186 - ORR1A0 LTR MaLR -8 338 1 1 1614 1680 29 10 0 chr6 134888851 134889059 -14627978 - ORR1A0-int LTR MaLR 0 1792 1583 1 1614 1634 16 5 0 chr6 134889044 134889235 -14627802 + MTA_Mm LTR MaLR 205 396 0 1 1614 325 278 82 0 chr6 134889332 134889429 -14627608 + PB1 SINE Alu 5 109 -18 1 1614 592 247 21 58 chr6 134889460 134889649 -14627388 - B3A SINE B2 -16 182 1 1 1614 885 173 173 0 chr6 134889956 134890147 -14626890 + URR1B DNA MER1_type 2 225 0 1 1614 840 114 0 0 chr6 134890173 134890313 -14626724 + (TC)n Simple_repeat Simple_repeat 1 140 0 1 1614 305 259 32 0 chr6 134890317 134890387 -14626650 - PB1D7 SINE Alu -46 74 4 1 1614 276 167 0 0 chr6 134890553 134890625 -14626412 + T-rich Low_complexity Low_complexity 1 72 0 1 1614 905 248 15 98 chr6 134891647 134891801 -14625236 - MTEa LTR MaLR -118 261 120 1 1614 3509 128 32 53 chr6 134891801 134892388 -14624649 - RMER15 LTR ERVL 0 575 1 1 1614 905 248 15 98 chr6 134892388 134892466 -14624571 - MTEa LTR MaLR -260 119 51 1 1614 1527 228 51 32 chr6 134892466 134892837 -14624200 + MTE2a LTR MaLR 2 379 0 1 1614 288 91 0 0 chr6 134892896 134892940 -14624097 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 1 1614 697 256 0 15 chr6 134892940 134893075 -14623962 - B1_Mur2 SINE Alu -14 135 3 1 1614 516 204 97 0 chr6 134893104 134893217 -14623820 - RSINE1 SINE B4 -29 136 13 1 1614 466 264 0 123 chr6 134893248 134893386 -14623651 - ID_B1 SINE B4 -17 207 87 1 1614 185 167 167 0 chr6 134893966 134894008 -14623029 - L3 LINE CR1 -26 4463 4415 1 1614 392 190 51 0 chr6 134894449 134894528 -14622509 + PB1D10 SINE Alu 33 115 -2 1 1614 653 252 7 33 chr6 134894546 134894698 -14622339 + RSINE1 SINE B4 11 158 -7 1 1614 216 335 103 108 chr6 134894698 134894733 -14622304 + B3A SINE B2 30 195 -3 1 1614 221 193 61 9 chr6 134894747 134894862 -14622175 + (TATG)n Simple_repeat Simple_repeat 4 124 0 1 1614 1222 54 0 0 chr6 134894928 134895076 -14621961 - B1_Mus1 SINE Alu 0 148 1 1 1614 235 111 56 0 chr6 134895086 134895122 -14621915 - B4A SINE B4 -70 222 185 1 1614 624 246 49 39 chr6 134895144 134895327 -14621710 - B3 SINE B2 0 216 49 1 1614 814 156 0 0 chr6 134895335 134895457 -14621580 - B1_Mus2 SINE Alu -15 132 11 1 1614 33 0 0 0 chr6 134895471 134895504 -14621533 + AT_rich Low_complexity Low_complexity 1 33 0 1 1614 1256 58 85 11 chr6 134895551 134895727 -14621310 - B2_Mm2 SINE B2 -5 190 2 1 1614 557 264 113 30 chr6 134895727 134895895 -14621142 - B3A SINE B2 -1 197 16 1 1614 371 192 77 0 chr6 134895862 134895940 -14621097 + B1_Mus2 SINE Alu 38 121 -26 1 1614 293 200 71 0 chr6 134896190 134896260 -14620777 + ID4 SINE ID 1 75 -8 1 1614 654 174 25 94 chr6 134896537 134896573 -14620464 - RSINE1 SINE B4 0 165 132 1 1614 606 28 0 0 chr6 134896573 134896645 -14620392 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1614 654 174 25 94 chr6 134896645 134896767 -14620270 - RSINE1 SINE B4 -34 131 18 1 1614 423 0 0 0 chr6 134896809 134896856 -14620181 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1614 714 226 88 16 chr6 134896862 134897055 -14619982 - B3 SINE B2 -8 208 2 1 1614 506 287 14 29 chr6 134897083 134897223 -14619814 - ID_B1 SINE B4 -1 223 86 1 1614 1377 0 0 0 chr6 134897242 134897395 -14619642 + (TC)n Simple_repeat Simple_repeat 2 154 0 1 1614 243 254 48 71 chr6 134897430 134897538 -14619499 - PB1D10 SINE Alu -9 108 11 1 1614 627 244 40 52 chr6 134897807 134897980 -14619057 - ID_B1 SINE B4 -53 171 1 1 1614 674 184 16 8 chr6 134898022 134898148 -14618889 + B1F SINE Alu 5 131 -18 1 1614 203 376 0 0 chr6 134898422 134898547 -14618490 + C-rich Low_complexity Low_complexity 1 125 0 1 1614 255 242 157 69 chr6 134898876 134898978 -14618059 - PB1D10 SINE Alu 0 117 7 1 1614 880 166 14 0 chr6 134899006 134899145 -14617892 - B1_Mur2 SINE Alu -8 141 1 1 1614 312 27 0 0 chr6 134899258 134899295 -14617742 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1614 441 301 94 27 chr6 134899296 134899552 -14617485 - B4A SINE B4 -18 274 2 1 1614 858 20 0 0 chr6 134900028 134900128 -14616909 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 1 1614 252 278 0 27 chr6 134900262 134900336 -14616701 - ID4 SINE ID -11 72 1 1 1614 386 152 49 37 chr6 134900472 134900484 -14616553 - B1F SINE Alu -2 147 138 1 1614 468 0 0 0 chr6 134900484 134900536 -14616501 + (TTTA)n Simple_repeat Simple_repeat 4 55 0 1 1614 386 152 49 37 chr6 134900536 134900605 -14616432 - B1F SINE Alu -12 137 65 1 1614 369 125 0 0 chr6 134900605 134900661 -14616376 - ID_B1 SINE B4 -24 200 145 1 1614 446 95 0 0 chr6 134900629 134900692 -14616345 - B1F SINE Alu -22 127 65 1 1614 385 109 0 0 chr6 134900663 134900718 -14616319 - ID_B1 SINE B4 -24 200 146 1 1614 633 203 17 0 chr6 134900722 134900840 -14616197 - ID_B1 SINE B4 -25 199 80 1 1614 232 287 143 32 chr6 134900852 134900978 -14616059 - B1F SINE Alu -9 140 1 1 1614 342 241 140 113 chr6 134901051 134901163 -14615874 + RSINE1 SINE B4 2 124 -41 1 1614 297 100 0 0 chr6 134901163 134901213 -14615824 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1614 342 241 140 113 chr6 134901213 134901250 -14615787 + RSINE1 SINE B4 125 155 -10 1 1614 516 198 16 72 chr6 134901521 134901646 -14615391 + MLT1J LTR MaLR 393 510 -2 1 1614 447 217 57 79 chr6 134902306 134902446 -14614591 + B1F SINE Alu 13 149 0 1 1614 246 307 26 13 chr6 134902583 134902659 -14614378 + B4 SINE B4 2 78 -214 1 1614 275 0 0 28 chr6 134902728 134902764 -14614273 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1614 522 0 0 0 chr6 134902841 134902899 -14614138 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 1 1614 1241 48 0 0 chr6 134902901 134903047 -14613990 - B1_Mm SINE Alu 0 147 2 1 1614 916 179 140 11 chr6 134903086 134903272 -14613765 + B3 SINE B2 1 210 -6 1 1614 1272 14 0 13 chr6 134903447 134903596 -14613441 - B1_Mus1 SINE Alu 0 148 2 1 1614 22 0 0 0 chr6 134903599 134903621 -14613416 + AT_rich Low_complexity Low_complexity 1 22 0 1 1614 222 37 0 0 chr6 134903794 134903821 -14613216 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1614 324 266 164 0 chr6 134903851 134903979 -14613058 - B1F1 SINE Alu 0 149 1 1 1614 658 264 155 5 chr6 134904483 134904677 -14612360 - ID_B1 SINE B4 0 224 2 1 1614 1378 91 21 0 chr6 134904775 134904962 -14612075 + B2_Mm2 SINE B2 1 191 -4 1 1614 24 32 0 0 chr6 134904988 134905019 -14612018 + AT_rich Low_complexity Low_complexity 1 31 0 1 1614 201 74 0 0 chr6 134905111 134905138 -14611899 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1614 441 0 0 0 chr6 134905234 134905283 -14611754 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1614 364 152 304 0 chr6 134905820 134905912 -14611125 + MTC LTR MaLR 89 208 -213 1 1614 288 70 0 0 chr6 134905924 134905967 -14611070 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1614 732 266 5 50 chr6 134906047 134906249 -14610788 - B3A SINE B2 -5 193 1 1 1614 840 140 13 40 chr6 134906289 134906438 -14610599 - B1_Mur3 SINE Alu 0 149 5 1 1614 764 201 192 17 chr6 134906487 134906664 -14610373 - B3 SINE B2 -7 209 2 1 1614 1145 52 0 0 chr6 134906689 134906824 -14610213 - B1_Mus1 SINE Alu -13 135 1 1 1614 351 0 0 0 chr6 134906850 134906889 -14610148 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1614 630 0 0 0 chr6 134906889 134906958 -14610079 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1614 452 227 164 0 chr6 134906962 134907072 -14609965 - RSINE1 SINE B4 -35 130 3 1 1614 276 244 11 128 chr6 134907093 134907153 -14609884 - PB1D10 SINE Alu 0 117 67 1 1614 1460 65 16 5 chr6 134907153 134907340 -14609697 - B2_Mm2 SINE B2 -5 190 2 1 1614 276 244 11 128 chr6 134907340 134907373 -14609664 - PB1D10 SINE Alu -51 66 36 1 1614 488 252 139 50 chr6 134907464 134907687 -14609350 + MLT1E2 LTR MaLR 1 302 -351 1 1614 300 70 0 0 chr6 134907711 134907754 -14609283 + (CACAA)n Simple_repeat Simple_repeat 5 47 0 1 1614 550 267 79 48 chr6 134907908 134908097 -14608940 + ORR1E LTR MaLR 1 195 -164 1 1614 293 219 145 12 chr6 134908136 134908219 -14608818 + ORR1E LTR MaLR 261 354 -5 1 1614 1198 51 19 173 chr6 134908248 134908370 -14608667 + B2_Mm2 SINE B2 2 100 -95 1 1614 1185 68 0 0 chr6 134908370 134908518 -14608519 - B1_Mus1 SINE Alu 0 148 1 1 1614 1198 51 19 173 chr6 134908518 134908609 -14608428 + B2_Mm2 SINE B2 101 182 -13 1 1614 245 174 0 42 chr6 134908648 134908696 -14608341 + B3 SINE B2 64 109 -107 1 1614 231 114 0 0 chr6 134908712 134908747 -14608290 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1614 21 57 0 0 chr6 134908747 134908782 -14608255 + AT_rich Low_complexity Low_complexity 1 35 0 1 1614 1456 70 5 0 chr6 134908785 134908971 -14608066 + B2_Mm1a SINE B2 1 187 -6 1 1614 373 287 27 87 chr6 134908971 134909120 -14607917 + MLT1E2 LTR MaLR 45 184 -443 1 1614 180 111 0 0 chr6 134909281 134909308 -14607729 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1 1614 239 294 0 0 chr6 134909311 134909362 -14607675 - RSINE1 SINE B4 -18 147 97 1 1614 623 272 7 0 chr6 134909636 134909772 -14607265 + B3A SINE B2 2 138 -60 1 1614 498 46 0 0 chr6 134909792 134909857 -14607180 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1614 378 274 57 0 chr6 134909883 134909989 -14607048 - MER2 DNA MER2_type -134 211 100 1 1614 271 274 18 89 chr6 134910886 134910998 -14606039 + MT2B2 LTR ERVL 155 258 -326 1 1614 316 311 8 102 chr6 134911081 134911199 -14605838 - PB1D10 SINE Alu -10 107 1 1 1614 343 265 19 47 chr6 134911261 134911368 -14605669 + BC1_Mm scRNA scRNA 1 104 -48 1 1614 350 197 237 50 chr6 134911477 134911616 -14605421 + RSINE1 SINE B4 1 165 0 1 1614 789 275 43 0 chr6 134911656 134911867 -14605170 + ID_B1 SINE B4 4 223 -1 1 1614 654 266 6 29 chr6 134912845 134913019 -14604018 + B4A SINE B4 1 170 -122 1 1614 396 297 0 0 chr6 134913365 134913456 -14603581 - B1F SINE Alu -58 91 1 1 1614 257 385 0 0 chr6 134913456 134913482 -14603555 - B4A SINE B4 -207 85 60 1 1614 210 118 0 0 chr6 134913523 134913557 -14603480 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1614 572 242 29 36 chr6 134913746 134913883 -14603154 - B1_Mur1 SINE Alu -1 148 13 1 1614 2144 168 91 7 chr6 134913879 134914288 -14602749 - RLTR28 LTR ERVL -34 490 48 1 1614 801 160 45 74 chr6 134914282 134914484 -14602553 + RLTR28 LTR ERVL 313 508 -16 1 1614 1208 34 0 14 chr6 134914673 134914810 -14602227 + B1_Mus2 SINE Alu 1 137 -10 1 1614 243 0 0 0 chr6 134914810 134914837 -14602200 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1614 588 315 107 47 chr6 134914864 134915116 -14601921 + B4A SINE B4 2 268 -24 1 1614 286 192 19 0 chr6 134915116 134915168 -14601869 + RMER15 LTR ERVL 1 53 -522 1 1614 1043 177 41 10 chr6 134915240 134915434 -14601603 + RMER15 LTR ERVL 29 228 -347 1 1614 386 145 0 0 chr6 134915617 134915679 -14601358 - B2_Mm2 SINE B2 -31 164 103 1 1614 423 147 0 0 chr6 134915665 134915733 -14601304 - B3 SINE B2 -147 69 2 1 1614 22 0 0 0 chr6 134915751 134915773 -14601264 + AT_rich Low_complexity Low_complexity 1 22 0 1 1614 391 189 36 0 chr6 134915774 134915885 -14601152 - Lx9 LINE L1 -7 7637 7523 1 1614 689 274 6 6 chr6 134915900 134916069 -14600968 - ID_B1 SINE B4 -54 170 2 1 1614 286 232 20 10 chr6 134916278 134916378 -14600659 - Lx9 LINE L1 0 7644 7544 1 1614 368 320 86 32 chr6 134916522 134916709 -14600328 + L1MD LINE L1 5172 5368 -778 1 1614 365 101 53 80 chr6 134916803 134916878 -14600159 + MTE2b LTR MaLR 307 379 0 1 1614 513 0 0 0 chr6 134917564 134917621 -14599416 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 1 1614 222 91 0 0 chr6 134917648 134917681 -14599356 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1614 240 111 0 0 chr6 134917782 134917818 -14599219 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1614 231 213 16 0 chr6 134917822 134917883 -14599154 + B3 SINE B2 155 216 0 1 1614 326 304 0 113 chr6 134918095 134918221 -14598816 + PB1D7 SINE Alu 10 119 -1 1 1614 300 180 27 43 chr6 134918232 134918321 -14598716 - B1F SINE Alu -1 148 41 1 1614 279 276 17 0 chr6 134918334 134918392 -14598645 - ID4_ SINE ID -20 63 5 1 1614 279 0 0 0 chr6 134918401 134918432 -14598605 + (TA)n Simple_repeat Simple_repeat 1 31 0 1 1614 622 243 14 49 chr6 134918515 134918658 -14598379 + RSINE1 SINE B4 8 145 -20 1 1614 935 184 18 41 chr6 134918736 134918957 -14598080 - B3 SINE B2 0 216 1 1 1614 364 206 0 0 chr6 134919004 134919067 -14597970 + PB1 SINE Alu 43 105 -22 1 1614 198 0 0 0 chr6 134919473 134919495 -14597542 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1614 1131 207 5 14 chr6 134919502 134919722 -14597315 + ID_B1 SINE B4 1 218 -6 1 1614 388 290 75 23 chr6 134919732 134919853 -14597184 + B3A SINE B2 1 130 -68 1 1614 942 130 0 0 chr6 134919853 134920030 -14597007 + (CA)n Simple_repeat Simple_repeat 1 177 0 1 1614 388 290 75 23 chr6 134920030 134920081 -14596956 + B3A SINE B2 131 181 -17 1 1614 971 115 0 28 chr6 134920091 134920893 -14596144 + (CA)n Simple_repeat Simple_repeat 1 779 0 1 1614 554 216 0 0 chr6 134920947 134921044 -14595993 + ID_B1 SINE B4 128 224 0 1 1614 1900 106 73 0 chr6 134921086 134921360 -14595677 + RMER4A LTR ERVK 41 334 -132 1 1614 959 85 85 0 chr6 134921362 134921492 -14595545 + B1_Mm SINE Alu 1 141 -6 1 1614 237 65 0 0 chr6 134921497 134921528 -14595509 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1614 861 156 26 13 chr6 134921528 134921684 -14595353 + RMER4A LTR ERVK 309 466 0 1 1614 591 262 53 105 chr6 134921684 134921885 -14595152 + ID_B1 SINE B4 27 216 -8 1 1614 344 270 71 9 chr6 134922630 134922742 -14594295 - PB1D7 SINE Alu -1 119 1 1 1614 352 220 140 0 chr6 134922796 134922896 -14594141 + PB1D10 SINE Alu 4 117 0 1 1614 281 276 0 16 chr6 134923105 134923234 -14593803 + (CACG)n Simple_repeat Simple_repeat 1 127 0 1 1614 21 0 0 0 chr6 134923234 134923255 -14593782 + AT_rich Low_complexity Low_complexity 1 21 0 1 1614 841 65 34 0 chr6 134923256 134923384 -14593653 + B1_Mus2 SINE Alu 2 148 0 1 1614 1789 213 81 102 chr6 134923626 134924196 -14592841 - RLTR20B1 LTR ERVK 0 563 6 1 1614 315 0 0 0 chr6 134924420 134924455 -14592582 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1614 318 210 24 24 chr6 134924537 134924703 -14592334 + (TG)n Simple_repeat Simple_repeat 1 166 0 1 1614 340 209 35 11 chr6 134924736 134924910 -14592127 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1614 221 220 27 9 chr6 134924934 134925044 -14591993 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1614 294 365 24 55 chr6 134925057 134925222 -14591815 - RMER13B LTR ERVK -8 900 741 1 1614 202 195 0 47 chr6 134925306 134925349 -14591688 + polypurine Low_complexity Low_complexity 4 44 0 1 1614 1641 198 68 42 chr6 134925411 134925821 -14591216 - RMER13A LTR ERVK -439 421 1 1 1614 266 162 68 0 chr6 134925821 134925895 -14591142 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1614 271 301 55 0 chr6 134925904 134925977 -14591060 - B1F2 SINE Alu -71 78 2 1 1614 240 363 48 2 chr6 134926491 134926637 -14590400 + L2c LINE L2 3228 3370 -5 1 1614 687 265 0 0 chr6 134927196 134927332 -14589705 + ID_B1 SINE B4 87 222 -2 1 1614 260 303 76 0 chr6 134927333 134927399 -14589638 + B4 SINE B4 83 153 -139 1 1614 418 220 128 20 chr6 134927343 134927445 -14589592 + PB1D9 SINE Alu 8 120 0 1 1614 633 276 5 57 chr6 134927465 134927624 -14589413 + B3A SINE B2 1 152 -46 1 1614 369 62 0 0 chr6 134927624 134927672 -14589365 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1614 633 276 5 57 chr6 134927672 134927704 -14589333 + B3A SINE B2 153 182 -16 1 1614 365 238 60 0 chr6 134927846 134927930 -14589107 - B1F2 SINE Alu -52 97 9 1 1614 1362 219 113 21 chr6 134927961 134928343 -14588694 - MTD LTR MaLR 0 419 3 1 1614 378 0 0 0 chr6 134928368 134928410 -14588627 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1614 270 0 0 0 chr6 134928411 134928441 -14588596 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1614 689 210 0 0 chr6 134928445 134928564 -14588473 - B1_Mur1 SINE Alu -14 135 17 1 1614 364 206 23 21 chr6 134928614 134928720 -14588317 - B1F SINE Alu -3 146 45 1 1614 1513 46 66 0 chr6 134929085 134929282 -14587755 - MTA_Mm LTR MaLR 0 396 187 1 1614 2521 42 54 0 chr6 134929272 134929585 -14587452 - MT2C_Mm LTR ERVL -145 330 1 1 1614 495 0 0 0 chr6 134929987 134930042 -14586995 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1614 351 0 0 0 chr6 134930102 134930141 -14586896 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1614 264 350 394 23 chr6 134930144 134930318 -14586719 - B4 SINE B4 -14 278 40 1 1614 314 227 92 102 chr6 134930318 134930416 -14586621 - PB1D10 SINE Alu -19 98 2 1 1614 418 198 99 0 chr6 134930654 134930735 -14586302 + B1F2 SINE Alu 42 130 -19 1 1614 785 238 19 15 chr6 134930777 134930982 -14586055 - ID_B1 SINE B4 0 224 19 1 1614 422 266 26 17 chr6 134932314 134932429 -14584608 + PB1D10 SINE Alu 2 117 0 1 1614 699 169 23 31 chr6 134932694 134932822 -14584215 - B1_Mur1 SINE Alu 0 149 23 1 1614 426 39 0 0 chr6 134932839 134932891 -14584146 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1614 228 224 88 15 chr6 134933038 134933106 -14583931 - ID4 SINE ID -9 74 2 1 1614 297 327 136 13 chr6 134934794 134934949 -14582088 + MIRb SINE MIR 27 200 -68 1 1614 215 39 56 56 chr6 134935145 134935199 -14581838 + A-rich Low_complexity Low_complexity 1 54 0 1 1614 23 33 0 0 chr6 134935244 134935274 -14581763 + AT_rich Low_complexity Low_complexity 1 30 0 1 1614 775 168 41 14 chr6 134936030 134936175 -14580862 - B1_Mur3 SINE Alu 0 149 1 1 1614 285 0 67 0 chr6 134936178 134936223 -14580814 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 1 1614 312 209 15 9 chr6 134936477 134936553 -14580484 + B1_Mur4 SINE Alu 46 148 -2 1 1614 1083 208 24 0 chr6 134936967 134937174 -14579863 + B3 SINE B2 1 212 -4 1 1614 593 275 33 11 chr6 134937446 134937630 -14579407 + B3A SINE B2 1 188 -10 1 1614 361 262 0 12 chr6 134937923 134938004 -14579033 + PB1D10 SINE Alu 25 104 -13 1 1614 378 107 0 0 chr6 134938008 134938064 -14578973 + (GGA)n Simple_repeat Simple_repeat 2 57 0 1 1614 224 213 16 0 chr6 134938063 134938124 -14578913 + (CAA)n Simple_repeat Simple_repeat 2 63 0 1 1614 580 256 75 0 chr6 134938176 134938309 -14578728 + ID_B1 SINE B4 81 223 -1 1 1614 315 253 54 29 chr6 134938331 134938443 -14578594 + PB1D10 SINE Alu 2 116 -1 1 1614 3016 115 35 2 chr6 134939227 134939689 -14577348 - RMER13B LTR ERVK -430 478 2 1 1614 313 293 243 24 chr6 134939737 134939947 -14577090 - MIR SINE MIR 0 262 7 1 1614 426 275 0 9 chr6 134939961 134940071 -14576966 + PB1D10 SINE Alu 2 110 -7 1 1614 1733 208 60 13 chr6 134940256 134940640 -14576397 + MTD LTR MaLR 5 406 -13 1 1614 1245 214 159 6 chr6 134940981 134941301 -14575736 + MTD LTR MaLR 19 387 -32 1 1614 2488 65 139 3 chr6 134941301 134941653 -14575384 + MTB LTR MaLR 1 400 0 1 1614 32 26 0 0 chr6 134941671 134941710 -14575327 + AT_rich Low_complexity Low_complexity 1 39 0 1 1614 470 294 86 69 chr6 134941740 134941807 -14575230 - B4A SINE B4 -2 290 228 1 1614 1053 101 0 13 chr6 134941807 134941957 -14575080 - B1_Mus1 SINE Alu 0 148 1 1 1614 470 294 86 69 chr6 134941957 134942064 -14574973 - B4A SINE B4 -65 227 113 1 1614 192 77 0 0 chr6 134942186 134942212 -14574825 + (TCCCC)n Simple_repeat Simple_repeat 3 28 0 1 1614 920 112 6 23 chr6 134942212 134942386 -14574651 + (TTCC)n Simple_repeat Simple_repeat 4 174 0 1 1614 225 325 106 24 chr6 134943109 134943232 -14573805 + B1_Mus1 SINE Alu 14 146 -2 1 1614 24 0 0 0 chr6 134943393 134943417 -14573620 + AT_rich Low_complexity Low_complexity 1 24 0 1 1614 545 184 31 0 chr6 134943853 134943951 -14573086 - RSINE1 SINE B4 -62 103 3 1 1614 1019 98 109 12 chr6 134945383 134945548 -14571489 + B2_Mm2 SINE B2 1 181 -14 1 1614 339 55 345 26 chr6 134945576 134945689 -14571348 + B2_Mm2 SINE B2 47 195 0 1 1614 1145 88 0 7 chr6 134945697 134945846 -14571191 + B1_Mus1 SINE Alu 1 148 0 1 1614 210 128 0 0 chr6 134945848 134945887 -14571150 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1614 363 284 214 36 chr6 134945993 134946161 -14570876 - MTEa LTR MaLR -13 366 169 1 1614 239 290 0 16 chr6 134946175 134946238 -14570799 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1614 303 214 13 79 chr6 134946369 134946445 -14570592 - RMER21B LTR ERV1 -275 567 497 1 1614 333 0 0 0 chr6 134946497 134946534 -14570503 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1614 262 274 21 116 chr6 134946562 134946657 -14570380 - RSINE1 SINE B4 -2 163 78 1 1614 756 158 0 0 chr6 134946890 134947023 -14570014 + (TA)n Simple_repeat Simple_repeat 2 134 0 1 1614 945 137 36 36 chr6 134947117 134947284 -14569753 - B2_Mm2 SINE B2 -27 168 2 1 1614 572 90 0 0 chr6 134947317 134947395 -14569642 + B1_Mus1 SINE Alu 2 79 -69 1 1614 321 228 0 92 chr6 134947318 134947405 -14569632 + MT2B LTR ERVL 167 245 -356 1 1614 280 105 0 0 chr6 134947399 134947437 -14569600 - B4A SINE B4 -78 214 177 1 1614 882 95 0 0 chr6 134947441 134947567 -14569470 + (TTTC)n Simple_repeat Simple_repeat 1 126 0 1 1614 1218 43 0 0 chr6 134947569 134947710 -14569327 - B1_Mus1 SINE Alu -6 142 2 1 1614 38 51 0 0 chr6 134947713 134947772 -14569265 + AT_rich Low_complexity Low_complexity 1 59 0 1 1614 903 243 29 0 chr6 134947789 134947999 -14569038 - B3 SINE B2 0 216 1 1 1614 802 190 58 32 chr6 134948000 134948190 -14568847 - B3A SINE B2 -2 196 2 1 1614 521 311 34 51 chr6 134948190 134948416 -14568621 - B4A SINE B4 -70 222 1 1 1614 277 248 106 44 chr6 134949134 134949294 -14567743 + LTR41 LTR ERVL 186 355 -413 1 1614 251 235 0 0 chr6 134949315 134949366 -14567671 - MTEa LTR MaLR -328 51 1 1 1614 224 284 124 29 chr6 134949528 134949633 -14567404 + L2 LINE L2 2666 2780 -639 1 1614 1454 251 28 15 chr6 134949756 134950083 -14566954 + MTE2a LTR MaLR 1 331 -48 1 1614 474 18 0 0 chr6 134950083 134950138 -14566899 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1614 212 0 36 0 chr6 134950138 134950165 -14566872 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1614 217 135 27 0 chr6 134950165 134950202 -14566835 + GA-rich Low_complexity Low_complexity 2 39 0 1 1614 280 182 36 0 chr6 134950797 134950852 -14566185 - PB1D9 SINE Alu 0 120 64 1 1614 786 190 58 0 chr6 134950952 134951089 -14565948 + B1_Mur4 SINE Alu 6 150 0 1 1614 941 218 101 0 chr6 134951111 134951299 -14565738 - B3 SINE B2 -6 210 4 1 1614 412 291 0 0 chr6 134951445 134951531 -14565506 + B1F1 SINE Alu 7 92 -57 1 1614 606 251 71 44 chr6 134951901 134951940 -14565097 + B3A SINE B2 2 38 -160 1 1614 2166 101 41 3 chr6 134951940 134952257 -14564780 - ORR1A4 LTR MaLR 0 329 1 1 1614 606 251 71 44 chr6 134952257 134952400 -14564637 + B3A SINE B2 39 189 -9 1 1614 852 157 69 87 chr6 134952422 134952605 -14564432 + B1_Mus2 SINE Alu 20 311 0 1 1614 1543 250 61 0 chr6 134952608 134953016 -14564021 + RCHARR1 DNA MER1_type 332 764 -210 1 1614 207 156 30 30 chr6 134953033 134953099 -14563938 + G-rich Low_complexity Low_complexity 1 66 0 1 1614 389 167 0 16 chr6 134953099 134953160 -14563877 + IAPLTR2b LTR ERVK 1 60 -267 1 1614 2735 65 2 119 chr6 134953187 134953624 -14563413 - RLTR10 LTR ERVK -4 386 1 1 1614 12961 30 14 4 chr6 134953626 134955479 -14561558 - RLTR10-int LTR ERVK -3 1984 41 1 1614 2752 62 2 119 chr6 134955495 134955932 -14561105 - RLTR10 LTR ERVK -4 386 1 1 1614 524 208 0 16 chr6 134955933 134956060 -14560977 + GA-rich Low_complexity Low_complexity 1 125 0 1 1614 273 203 70 28 chr6 134956308 134956379 -14560658 - PB1D7 SINE Alu -10 110 37 1 1614 400 382 62 0 chr6 134956370 134956548 -14560489 + MER44D DNA MER2_type 12 200 -505 1 1614 524 155 205 8 chr6 134956682 134956799 -14560238 - B1_Mus1 SINE Alu -7 141 2 1 1614 674 223 155 31 chr6 134956800 134956994 -14560043 + MER44D DNA MER2_type 487 704 -1 1 1614 282 250 121 64 chr6 134956994 134957131 -14559906 + ORSL DNA Tip100 57 201 -74 1 1614 507 270 9 0 chr6 134957152 134957267 -14559770 - PB1D9 SINE Alu 0 120 5 1 1614 31 76 0 0 chr6 134957279 134957345 -14559692 + AT_rich Low_complexity Low_complexity 1 66 0 1 1614 235 244 331 15 chr6 134957891 134957906 -14559131 - B4 SINE B4 -48 244 224 1 1614 508 230 14 69 chr6 134957906 134958051 -14558986 - B1_Mur3 SINE Alu -12 137 1 1 1614 511 178 56 0 chr6 134958054 134958144 -14558893 - PB1D10 SINE Alu -5 112 18 1 1614 235 244 331 15 chr6 134958144 134958168 -14558869 - B4 SINE B4 -69 220 71 1 1614 439 287 30 69 chr6 134958658 134958789 -14558248 + B1_Mur4 SINE Alu 11 136 -14 1 1614 249 140 0 0 chr6 134958815 134958872 -14558165 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 1 1614 600 232 0 31 chr6 134959156 134959285 -14557752 + ID_B1 SINE B4 84 208 -16 1 1614 366 23 0 0 chr6 134959288 134959331 -14557706 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1614 494 100 148 12 chr6 134959568 134959649 -14557388 + URR1A DNA MER1_type 1 92 -134 1 1614 243 35 0 0 chr6 134959652 134959681 -14557356 + URR1A DNA MER1_type 64 92 -134 1 1614 1126 76 38 0 chr6 134959684 134959841 -14557196 + URR1A DNA MER1_type 64 226 0 1 1614 914 148 7 0 chr6 134960055 134960197 -14556840 - B1_Mus1 SINE Alu -1 147 5 1 1614 896 154 0 0 chr6 134960402 134960538 -14556499 - B1_Mur2 SINE Alu -9 140 5 1 1614 504 85 80 0 chr6 134960892 134960980 -14556057 - B1_Mus2 SINE Alu -1 116 1 1 1614 215 340 107 65 chr6 134961041 134961302 -14555735 + L2c LINE L2 3116 3387 0 1 1614 21 0 0 0 chr6 134961420 134961441 -14555596 + AT_rich Low_complexity Low_complexity 1 21 0 1 1614 246 331 20 26 chr6 134962023 134962175 -14554862 + MIR SINE MIR 94 244 -18 1 1614 3841 40 50 4 chr6 134962771 134963251 -14553786 + L1Md_F3 LINE L1 6069 6570 -14 1 1614 469 289 95 38 chr6 134963273 134963287 -14553750 + B4 SINE B4 70 153 -139 1 1614 605 193 22 21 chr6 134963287 134963420 -14553617 + B1_Mur3 SINE Alu 1 119 -1 1 1614 469 289 95 38 chr6 134963420 134963431 -14553606 + B4 SINE B4 154 236 -56 1 1614 917 169 14 0 chr6 134963666 134963814 -14553223 + B1_Mur4 SINE Alu 1 150 0 1 1614 542 237 0 17 chr6 134964241 134964361 -14552676 - PB1 SINE Alu -2 125 8 1 1614 610 223 157 7 chr6 134964709 134964849 -14552188 + RSINE1 SINE B4 5 165 0 1 1614 248 303 166 49 chr6 134964849 134964872 -14552165 + B2_Mm2 SINE B2 4 185 -10 1 1614 874 140 7 14 chr6 134964898 134965036 -14552001 - B1_Mus2 SINE Alu 0 147 11 1 1614 381 285 75 94 chr6 134964900 134965059 -14551978 - B4 SINE B4 -69 223 68 1 1614 934 109 72 7 chr6 134965983 134966121 -14550916 - B1_Mur3 SINE Alu -1 148 2 1 1614 471 227 24 40 chr6 134966823 134966947 -14550090 + B1F SINE Alu 28 149 0 1 1614 390 312 15 15 chr6 134967588 134967718 -14549319 + B1F SINE Alu 1 130 -19 1 1614 477 224 394 0 chr6 134968419 134968564 -14548473 + B4 SINE B4 1 202 -90 1 1614 23 0 0 0 chr6 134968879 134968902 -14548135 + AT_rich Low_complexity Low_complexity 1 23 0 1 1614 759 273 57 0 chr6 134969266 134969460 -14547577 + ID_B1 SINE B4 8 212 -12 1 1614 527 259 108 0 chr6 134969653 134969819 -14547218 - MER20 DNA MER1_type -6 213 30 1 1614 1000 142 35 29 chr6 134970025 134970199 -14546838 - B2_Mm2 SINE B2 -17 178 4 1 1614 725 219 0 40 chr6 134970343 134970495 -14546542 + B1_Mur3 SINE Alu 2 147 -2 1 1614 237 98 0 0 chr6 134970785 134970826 -14546211 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 1 1614 1016 198 19 24 chr6 134970976 134971183 -14545854 - B3 SINE B2 -10 206 1 1 1614 411 173 348 14 chr6 134971194 134971335 -14545702 - Lx8 LINE L1 -3 7470 7283 1 1614 705 241 0 0 chr6 134972754 134972895 -14544142 - B1F SINE Alu -7 142 2 1 1614 237 298 95 11 chr6 134973007 134973102 -14543935 - L1M5 LINE L1 -459 5665 5563 1 1614 643 229 45 57 chr6 134973761 134973942 -14543095 - B3A SINE B2 -1 215 36 1 1614 217 176 0 0 chr6 134974217 134974251 -14542786 - B1F2 SINE Alu -113 36 3 1 1614 382 219 0 0 chr6 134974681 134974745 -14542292 + B4A SINE B4 227 290 -2 1 1614 1067 211 190 17 chr6 134975479 134975768 -14541269 - ORR1D1 LTR MaLR 0 374 36 1 1614 524 259 0 9 chr6 134975806 134975919 -14541118 + ID_B1 SINE B4 100 211 -13 1 1614 210 315 71 101 chr6 134975930 134976128 -14540909 + B2_Mm1a SINE B2 2 193 0 1 1614 305 272 24 12 chr6 134977116 134977198 -14539839 + ID4 SINE ID 1 83 0 1 1614 990 231 38 0 chr6 134977202 134977414 -14539623 + B4A SINE B4 1 220 -72 1 1614 458 269 24 56 chr6 134977431 134977557 -14539480 + RSINE1 SINE B4 3 124 -41 1 1614 450 0 0 0 chr6 134977557 134977607 -14539430 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1614 395 19 0 19 chr6 134977667 134977720 -14539317 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1614 261 206 0 16 chr6 134977748 134977812 -14539225 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1614 306 228 71 17 chr6 134978343 134978434 -14538603 + PB1D10 SINE Alu 4 94 -55 1 1614 394 360 65 20 chr6 134978439 134978592 -14538445 + RSINE1 SINE B4 4 163 -2 1 1614 351 0 0 0 chr6 134978599 134978638 -14538399 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 1614 488 219 0 50 chr6 134979129 134979230 -14537807 - B1F1 SINE Alu -1 148 53 1 1614 4381 43 2 18 chr6 134979633 134980191 -14536846 + L1Md_F2 LINE L1 6050 6582 0 1 1614 789 103 47 20 chr6 134980190 134980338 -14536699 - Lx4B LINE L1 -11 7047 6896 1 1614 278 264 140 9 chr6 134980373 134980480 -14536557 + Charlie7a DNA MER1_type 47 167 -105 1 1614 309 203 125 0 chr6 134980524 134980588 -14536449 + ID4 SINE ID 8 79 -4 1 1614 1117 189 5 45 chr6 134980603 134980825 -14536212 + B3 SINE B2 2 214 -2 1 1614 343 288 21 35 chr6 134980898 134981042 -14535995 - B1F2 SINE Alu -6 143 2 1 1614 475 235 29 29 chr6 134981134 134981239 -14535798 + RSINE1 SINE B4 3 107 -58 1 1614 260 309 44 0 chr6 134981251 134981319 -14535718 - RSINE1 SINE B4 -93 72 2 1 1614 253 316 102 0 chr6 134981666 134981764 -14535273 - ID_B1 SINE B4 -36 188 81 1 1614 273 327 113 19 chr6 134981908 134982014 -14535023 + PB1D10 SINE Alu 1 116 -1 1 1614 408 331 59 59 chr6 134981967 134982153 -14534884 + B4 SINE B4 38 223 -69 1 1614 587 203 161 0 chr6 134982036 134982154 -14534883 + B1_Mur2 SINE Alu 12 148 -1 1 1614 255 274 0 0 chr6 134982496 134982558 -14534479 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1614 413 298 36 60 chr6 134982564 134982732 -14534305 - RSINE1 SINE B4 0 165 2 1 1614 394 279 0 61 chr6 134982798 134982897 -14534140 - PB1D9 SINE Alu -26 94 2 1 1614 265 100 40 0 chr6 134983516 134983566 -14533471 + (TCTCCC)n Simple_repeat Simple_repeat 6 57 0 1 1614 461 237 21 0 chr6 134983573 134983666 -14533371 - B3A SINE B2 -84 114 20 1 1614 597 209 0 25 chr6 134983820 134983938 -14533099 + PB1D10 SINE Alu 1 115 -2 1 1614 239 306 90 27 chr6 134984017 134984128 -14532909 - PB1D7 SINE Alu -2 118 1 1 1614 321 237 53 0 chr6 134984523 134984599 -14532438 + PB1D10 SINE Alu 36 115 -2 1 1614 753 238 109 21 chr6 134984608 134984801 -14532236 + B3 SINE B2 1 210 -6 1 1614 217 394 0 9 chr6 134985041 134985146 -14531891 + G-rich Low_complexity Low_complexity 4 107 0 1 1614 635 147 0 0 chr6 134985209 134985304 -14531733 + B1_Mur1 SINE Alu 23 117 -32 1 1614 500 314 6 17 chr6 134985318 134985343 -14531694 + ID SINE ID 67 81 -143 1 1614 412 293 41 41 chr6 134985343 134985489 -14531548 + B1F SINE Alu 1 146 -3 1 1614 435 83 0 0 chr6 134985934 134985994 -14531043 + (TTCA)n Simple_repeat Simple_repeat 3 62 0 1 1614 866 258 42 0 chr6 134986079 134986292 -14530745 + ID_B1 SINE B4 1 222 -2 1 1614 700 144 87 8 chr6 134986337 134986463 -14530574 + B1_Mur2 SINE Alu 5 140 -9 1 1614 490 223 68 23 chr6 134986835 134986968 -14530069 + ID_B1 SINE B4 86 224 0 1 1614 1385 118 116 97 chr6 134987099 134987441 -14529596 + ORR1B1 LTR MaLR 1 394 0 1 1614 333 0 0 0 chr6 134987457 134987494 -14529543 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1614 306 206 111 0 chr6 134987500 134987563 -14529474 - ID_B1 SINE B4 -25 199 130 1 1614 22 0 0 0 chr6 134987563 134987585 -14529452 + AT_rich Low_complexity Low_complexity 1 22 0 1 1614 308 292 121 67 chr6 134987691 134987856 -14529181 + ORR1E LTR MaLR 19 192 -167 1 1614 270 287 44 53 chr6 134987964 134988016 -14529021 - B1F2 SINE Alu -36 113 1 1 1614 287 274 0 0 chr6 134988016 134988078 -14528959 - B4 SINE B4 -145 147 86 1 1614 341 161 16 0 chr6 134988092 134988154 -14528883 + B1_Mur1 SINE Alu 86 148 -1 1 1614 1285 260 127 48 chr6 134988208 134988837 -14528200 + Lx9 LINE L1 6959 7637 -7 1 1614 683 148 127 57 chr6 134988860 134989018 -14528019 + ORR1C2 LTR MaLR 1 169 -215 1 1614 998 189 103 17 chr6 134989021 134989351 -14527686 + RMER17C LTR ERVK 7 407 -3 1 1614 376 152 61 6 chr6 134989375 134989464 -14527573 + ORR1C2 LTR MaLR 271 380 -4 1 1614 784 160 45 15 chr6 134989464 134989597 -14527440 - B1_Mur3 SINE Alu -12 137 1 1 1614 1080 214 190 28 chr6 134989646 134989750 -14527287 - MTE2b LTR MaLR -49 330 202 1 1614 216 0 0 0 chr6 134989750 134989774 -14527263 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1614 1080 214 190 28 chr6 134989774 134989953 -14527084 - MTE2b LTR MaLR -178 201 2 1 1614 324 273 13 0 chr6 134990026 134990103 -14526934 - ID4 SINE ID -1 82 5 1 1614 923 225 218 44 chr6 134990950 134990988 -14526049 - ORR1D1 LTR MaLR -1 377 330 1 1614 2227 165 66 34 chr6 134990988 134991046 -14525991 - MTC LTR MaLR 0 421 375 1 1614 1231 110 21 10 chr6 134991046 134991239 -14525798 + B2_Mm2 SINE B2 1 195 0 1 1614 2227 165 66 34 chr6 134991239 134991588 -14525449 - MTC LTR MaLR -47 374 1 1 1614 1052 202 96 38 chr6 134991588 134991832 -14525205 - ORR1D1 LTR MaLR -49 329 38 1 1614 1999 151 77 3 chr6 134991832 134992197 -14524840 - ORR1B1 LTR MaLR 0 394 3 1 1614 1052 194 58 36 chr6 134992197 134992234 -14524803 - ORR1D1 LTR MaLR -337 37 1 1 1614 728 243 35 7 chr6 134992510 134992655 -14524382 - B1F SINE Alu 0 149 1 1 1614 491 293 40 13 chr6 134992866 134993018 -14524019 - RSINE1 SINE B4 -8 157 2 1 1614 27 0 0 0 chr6 134993040 134993067 -14523970 + AT_rich Low_complexity Low_complexity 1 27 0 1 1614 502 199 146 76 chr6 134993067 134993252 -14523785 - B3A SINE B2 0 198 1 1 1614 847 206 28 28 chr6 134993282 134993295 -14523742 - B3 SINE B2 -36 180 168 1 1614 585 0 0 0 chr6 134993295 134993360 -14523677 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 1 1614 847 206 28 28 chr6 134993360 134993526 -14523511 - B3 SINE B2 -49 167 1 1 1614 211 234 85 0 chr6 134993559 134993606 -14523431 - MIR SINE MIR -189 73 23 1 1614 385 250 0 36 chr6 134993941 134993999 -14523038 + PB1D10 SINE Alu 10 67 -50 1 1614 1140 99 93 0 chr6 134993999 134994171 -14522866 + B2_Mm2 SINE B2 1 188 -7 1 1614 385 250 0 36 chr6 134994171 134994195 -14522842 + PB1D10 SINE Alu 68 89 -28 1 1614 342 324 91 39 chr6 134994264 134994418 -14522619 - B4 SINE B4 -6 286 125 1 1614 304 286 39 0 chr6 134994734 134994811 -14522226 - B4A SINE B4 -208 84 5 1 1614 230 283 209 36 chr6 134994818 134994928 -14522109 - B1_Mm SINE Alu -18 129 1 1 1614 432 204 224 0 chr6 134994831 134994929 -14522108 - ID_B1 SINE B4 -24 200 81 1 1614 325 203 94 30 chr6 134995544 134995643 -14521394 - PB1D10 SINE Alu -27 100 1 1 1614 241 312 98 35 chr6 134996083 134996226 -14520811 + L2c LINE L2 3234 3385 -2 1 1614 495 48 0 0 chr6 134996227 134996289 -14520748 + (TGAA)n Simple_repeat Simple_repeat 2 63 0 1 1614 625 325 28 28 chr6 134996361 134996576 -14520461 + ID_B1 SINE B4 1 215 -9 1 1614 484 177 8 58 chr6 134996598 134996718 -14520319 + B1F2 SINE Alu 1 114 -35 1 1614 264 59 0 0 chr6 134996719 134996753 -14520284 + (TAAG)n Simple_repeat Simple_repeat 1 34 0 1 1614 980 254 144 47 chr6 134996776 134996934 -14520103 + RLTR12B LTR ERVK 47 247 -281 1 1614 301 102 0 33 chr6 134996934 134996995 -14520042 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1614 980 254 144 47 chr6 134996995 134997266 -14519771 + RLTR12B LTR ERVK 248 518 -10 1 1614 979 7 100 0 chr6 134997692 134997842 -14519195 + (GGGAA)n Simple_repeat Simple_repeat 5 169 0 1 1614 501 289 47 0 chr6 134998111 134998239 -14518798 - B1F SINE Alu -1 148 15 1 1614 467 258 0 0 chr6 134998297 134998394 -14518643 + PB1D7 SINE Alu 14 110 -10 1 1614 27 0 0 0 chr6 134998404 134998431 -14518606 + AT_rich Low_complexity Low_complexity 1 27 0 1 1614 615 179 323 12 chr6 134998431 134998595 -14518442 + B3 SINE B2 2 216 0 1 1614 460 262 53 15 chr6 134998612 134998744 -14518293 + ID_B1 SINE B4 5 141 -83 1 1614 525 210 74 74 chr6 134999446 134999595 -14517442 + B1F SINE Alu 1 149 0 1 1614 784 136 14 50 chr6 134999669 134999808 -14517229 + B1_Mur4 SINE Alu 2 135 -15 1 1614 736 155 132 20 chr6 134999814 134999965 -14517072 + ORR1B1 LTR MaLR 41 208 -186 1 1614 959 107 45 112 chr6 135000000 135000140 -14516897 + ORR1B1 LTR MaLR 219 354 -40 1 1614 621 0 0 0 chr6 135000140 135000209 -14516828 + (TC)n Simple_repeat Simple_repeat 1 69 0 2 1614 1125 67 0 0 chr6 135000209 135000343 -14516694 - B1_Mus1 SINE Alu -11 137 4 3 1614 959 107 45 112 chr6 135000343 135000380 -14516657 + ORR1B1 LTR MaLR 355 384 -10 1 1614 396 0 0 0 chr6 135000393 135000437 -14516600 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 4 1614 333 0 0 0 chr6 135000514 135000551 -14516486 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1614 386 242 131 15 chr6 135000556 135000686 -14516351 + B2_Mm2 SINE B2 1 145 -50 6 1614 369 0 0 0 chr6 135000689 135000730 -14516307 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1614 299 179 43 29 chr6 135000884 135000953 -14516084 + PB1D10 SINE Alu 48 117 0 8 1614 953 246 19 0 chr6 135000995 135001206 -14515831 + B3 SINE B2 2 216 0 9 1614 898 175 0 7 chr6 135001243 135001387 -14515650 + B1F SINE Alu 5 147 -2 1 1614 355 261 119 25 chr6 135001810 135001928 -14515109 + B1F1 SINE Alu 21 149 0 1 1614 378 328 32 60 chr6 135001971 135002221 -14514816 + B4A SINE B4 41 283 -9 1 1614 462 36 0 0 chr6 135002253 135002309 -14514728 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1614 3150 77 10 2 chr6 135002337 135002755 -14514282 + BGLII LTR ERVK 1 421 0 1 1614 883 271 10 10 chr6 135002771 135002972 -14514065 + B3 SINE B2 2 202 -14 1 1614 243 88 0 0 chr6 135002972 135003006 -14514031 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1614 845 173 0 14 chr6 135003006 135003147 -14513890 + B1_Mur2 SINE Alu 11 149 0 1 1614 330 87 0 0 chr6 135003166 135003212 -14513825 + (TAAG)n Simple_repeat Simple_repeat 2 47 0 1 1614 647 287 0 0 chr6 135003243 135003372 -14513665 + B1F2 SINE Alu 14 142 -7 1 1614 180 0 0 0 chr6 135003373 135003393 -14513644 + (CAGA)n Simple_repeat Simple_repeat 1 20 0 2 1614 299 237 0 17 chr6 135003453 135003513 -14513524 - PB1D9 SINE Alu -61 59 1 2 1614 266 295 25 13 chr6 135003513 135003526 -14513511 - ID_B1 SINE B4 -76 127 69 2 1614 23 0 0 0 chr6 135003534 135003557 -14513480 + AT_rich Low_complexity Low_complexity 1 23 0 2 1615 1566 21 0 111 chr6 135004469 135004686 -14512351 - B2_Mm1a SINE B2 0 193 1 2 1615 1044 194 66 10 chr6 135005004 135005202 -14511835 - B3 SINE B2 -4 212 4 2 1615 432 301 16 39 chr6 135005307 135005435 -14511602 + ID_B1 SINE B4 84 208 -16 2 1615 376 141 0 37 chr6 135005435 135005516 -14511521 + GA-rich Low_complexity Low_complexity 2 79 0 2 1615 189 74 0 0 chr6 135005551 135005578 -14511459 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1615 410 198 36 54 chr6 135005836 135005948 -14511089 + PB1D10 SINE Alu 7 116 -1 2 1615 293 276 60 119 chr6 135006397 135006582 -14510455 - MLT1B LTR MaLR -39 351 178 3 1615 352 296 12 0 chr6 135006893 135006974 -14510063 - ID4_ SINE ID -1 82 1 3 1615 322 292 33 11 chr6 135006998 135007088 -14509949 - PB1D10 SINE Alu -25 92 1 3 1615 339 127 0 0 chr6 135007301 135007364 -14509673 + (A)n Simple_repeat Simple_repeat 1 63 0 3 1615 760 211 41 21 chr6 135007399 135007544 -14509493 + B1_Mur1 SINE Alu 2 149 0 3 1615 572 273 8 0 chr6 135007561 135007682 -14509355 - ID_B1 SINE B4 -15 209 88 3 1615 451 269 44 22 chr6 135007724 135007741 -14509296 - B3A SINE B2 -19 179 164 3 1615 456 19 0 0 chr6 135007741 135007794 -14509243 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1615 451 269 44 22 chr6 135007794 135007913 -14509124 - B3A SINE B2 -35 163 40 3 1615 322 192 60 3 chr6 135007972 135008061 -14508976 + PB1D10 SINE Alu 27 125 -24 3 1615 269 235 11 129 chr6 135008467 135008560 -14508477 - ID4_ SINE ID 0 83 2 3 1615 540 323 10 21 chr6 135008570 135008721 -14508316 - ID_B1 SINE B4 -68 224 80 4 1615 339 25 0 0 chr6 135008981 135009021 -14508016 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1615 207 0 0 0 chr6 135009077 135009100 -14507937 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 1615 535 297 49 44 chr6 135010191 135010374 -14506663 + B3 SINE B2 1 184 -32 4 1615 414 0 0 0 chr6 135010374 135010420 -14506617 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1615 964 218 21 0 chr6 135010443 135010636 -14506401 + B3 SINE B2 1 197 -19 4 1615 648 0 0 0 chr6 135010638 135010710 -14506327 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 4 1615 764 267 121 17 chr6 135010762 135011002 -14506035 - RMER15 LTR ERVL -15 560 296 4 1615 234 219 29 59 chr6 135011077 135011145 -14505892 - RMER15 LTR ERVL -509 66 1 4 1615 413 294 80 7 chr6 135011508 135011645 -14505392 + MER33 DNA MER1_type 1 147 -177 4 1615 506 16 16 0 chr6 135011645 135011708 -14505329 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1615 288 340 19 0 chr6 135011720 135011823 -14505214 - PB1D10 SINE Alu -10 107 3 5 1615 464 280 174 0 chr6 135011884 135012016 -14505021 - RSINE1 SINE B4 -9 156 2 5 1615 1327 50 0 11 chr6 135012051 135012233 -14504804 + (TGG)n Simple_repeat Simple_repeat 1 180 0 5 1615 713 223 0 8 chr6 135012241 135012372 -14504665 + B1_Mus1 SINE Alu 6 135 -13 5 1615 1100 212 19 19 chr6 135012372 135012588 -14504449 - B3 SINE B2 0 216 1 5 1615 365 281 90 8 chr6 135012715 135012837 -14504200 - B1F SINE Alu -17 132 1 5 1615 2076 106 27 14 chr6 135012889 135013226 -14503811 - MT2B2 LTR ERVL -9 466 155 5 1615 606 63 0 0 chr6 135013229 135013308 -14503729 + (TCC)n Simple_repeat Simple_repeat 3 81 0 5 1615 1165 129 43 0 chr6 135013310 135013496 -14503541 - B2_Mm2 SINE B2 0 195 2 5 1615 444 37 0 0 chr6 135013823 135013877 -14503160 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1615 387 338 13 76 chr6 135013878 135014035 -14503002 - RSINE1 SINE B4 -17 148 2 6 1615 231 252 119 127 chr6 135014035 135014153 -14502884 - B1F1 SINE Alu -1 148 32 6 1615 425 246 8 24 chr6 135014184 135014302 -14502735 - ID_B1 SINE B4 -33 191 78 6 1615 885 174 0 0 chr6 135014314 135014463 -14502574 - B1_Mur4 SINE Alu 0 150 2 6 1615 1001 221 5 20 chr6 135014510 135014709 -14502328 + URR1B DNA MER1_type 17 212 -13 6 1615 638 260 16 10 chr6 135016009 135016156 -14500881 + ID_B1 SINE B4 80 224 -68 6 1615 185 0 40 0 chr6 135016588 135016613 -14500424 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1615 336 220 188 35 chr6 135016625 135016710 -14500327 - B1F SINE Alu -1 116 19 6 1615 442 126 11 79 chr6 135017465 135017655 -14499382 + (TCTCTG)n Simple_repeat Simple_repeat 4 180 0 6 1615 522 252 142 0 chr6 135017704 135017831 -14499206 - RSINE1 SINE B4 -13 152 8 6 1615 435 231 120 0 chr6 135017845 135017962 -14499075 - B1F2 SINE Alu -8 141 11 7 1615 397 287 59 44 chr6 135017962 135017980 -14499057 - ID_B1 SINE B4 -8 216 80 7 1615 366 250 32 114 chr6 135018006 135018164 -14498873 - B1F1 SINE Alu 0 149 5 7 1615 813 95 0 0 chr6 135018192 135018308 -14498729 + (TTCCC)n Simple_repeat Simple_repeat 2 117 0 7 1615 279 0 0 0 chr6 135018308 135018339 -14498698 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 7 1615 258 337 31 0 chr6 135018341 135018439 -14498598 - PB1 SINE Alu -14 113 13 7 1615 1139 71 0 0 chr6 135018711 135018851 -14498186 + B1_Mus2 SINE Alu 5 144 -3 7 1615 468 0 0 0 chr6 135018858 135018910 -14498127 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 7 1615 766 272 69 56 chr6 135019120 135019408 -14497629 + B4A SINE B4 1 292 0 7 1615 300 111 0 0 chr6 135019704 135019749 -14497288 + (ATG)n Simple_repeat Simple_repeat 1 45 0 7 1615 365 293 25 25 chr6 135020027 135020146 -14496891 + PB1D7 SINE Alu 1 119 -1 8 1615 186 234 64 0 chr6 135020237 135020284 -14496753 - MIRm SINE MIR -62 214 165 8 1615 464 278 0 34 chr6 135020550 135020669 -14496368 + PB1D10 SINE Alu 2 116 -1 8 1615 847 166 27 27 chr6 135020674 135020823 -14496214 + B1_Mur4 SINE Alu 2 150 0 8 1615 528 184 0 0 chr6 135020848 135020951 -14496086 + GA-rich Low_complexity Low_complexity 2 104 0 8 1615 805 169 53 26 chr6 135020953 135021105 -14495932 + B3A SINE B2 1 156 -42 8 1615 477 0 0 0 chr6 135021116 135021169 -14495868 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1615 674 207 21 28 chr6 135021314 135021458 -14495579 + ID_B1 SINE B4 78 220 -4 8 1615 1027 178 39 70 chr6 135021995 135022224 -14494813 + URR1A DNA MER1_type 1 222 -4 8 1615 335 216 70 35 chr6 135022443 135022558 -14494479 - PB1D9 SINE Alu 0 120 2 8 1615 1093 132 6 39 chr6 135022655 135022673 -14494364 - B2_Mm2 SINE B2 -19 176 161 9 1615 901 158 0 14 chr6 135022673 135022814 -14494223 - B1_Mur4 SINE Alu -7 143 5 9 1615 1093 132 6 39 chr6 135022814 135022828 -14494209 - B2_Mm2 SINE B2 -35 160 151 9 1615 423 0 0 0 chr6 135022828 135022875 -14494162 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 9 1615 1093 132 6 39 chr6 135022875 135023023 -14494014 - B2_Mm2 SINE B2 -45 150 2 9 1615 440 250 125 0 chr6 135023043 135023171 -14493866 - B1F SINE Alu -5 144 1 9 1615 477 256 131 102 chr6 135023275 135023519 -14493518 - B4 SINE B4 -22 270 20 9 1615 202 229 62 0 chr6 135024296 135024344 -14492693 - MIRc SINE MIR -118 150 100 9 1615 596 279 280 18 chr6 135024382 135024660 -14492377 - ORR1E LTR MaLR -3 356 6 9 1615 476 174 51 0 chr6 135024861 135024959 -14492078 + PB1D7 SINE Alu 17 119 -1 9 1615 770 143 8 0 chr6 135024965 135025084 -14491953 + RSINE1 SINE B4 3 122 -43 9 1615 186 43 0 0 chr6 135025085 135025108 -14491929 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1615 221 259 0 49 chr6 135025127 135025188 -14491849 + (CAAA)n Simple_repeat Simple_repeat 1 58 0 1 1615 357 214 88 22 chr6 135025490 135025581 -14491456 + PB1D7 SINE Alu 24 120 0 1 1615 301 65 47 31 chr6 135025581 135025645 -14491392 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 1 1615 21 0 0 0 chr6 135025753 135025774 -14491263 + GC_rich Low_complexity Low_complexity 1 21 0 1 1615 468 0 0 0 chr6 135025921 135025973 -14491064 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1615 2299 175 103 113 chr6 135026274 135026912 -14490125 - RMER13B LTR ERVK -271 637 6 1 1615 371 250 0 0 chr6 135026925 135027001 -14490036 - ID_B1 SINE B4 -30 194 119 1 1615 623 318 55 73 chr6 135027004 135027131 -14489906 - MYSERV-int LTR ERVK -2450 4100 4057 1 1615 2105 99 35 9 chr6 135027131 135027446 -14489591 - Lx LINE L1 -2 6652 6330 1 1615 193 0 61 30 chr6 135027456 135027489 -14489548 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1615 623 285 38 87 chr6 135027489 135027779 -14489258 - MYSERV-int LTR ERVK -2501 4049 3772 1 1615 228 280 40 0 chr6 135028330 135028405 -14488632 - Lx8 LINE L1 -189 7284 7207 1 1615 340 265 48 29 chr6 135029850 135029955 -14487082 + PB1D10 SINE Alu 10 116 -1 1 1615 1050 234 9 5 chr6 135029998 135030213 -14486824 + B3 SINE B2 1 216 0 1 1615 1037 61 0 15 chr6 135030326 135030460 -14486577 - B2_Mm2 SINE B2 -63 132 1 1 1615 797 226 115 5 chr6 135030498 135030689 -14486348 - ORR1D2 LTR MaLR -154 216 5 1 1615 702 241 60 24 chr6 135030694 135030860 -14486177 - ORR1D2-int LTR MaLR -1 1369 1198 1 1615 987 234 0 11 chr6 135031028 135031195 -14485842 + B3A SINE B2 1 166 -32 1 1615 306 0 0 0 chr6 135031195 135031229 -14485808 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 1 1615 401 231 181 36 chr6 135031702 135031806 -14485231 - ID_B1 SINE B4 -2 222 102 1 1615 540 0 0 0 chr6 135031806 135031866 -14485171 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1615 576 0 0 0 chr6 135031866 135031929 -14485108 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1615 401 231 181 36 chr6 135031929 135032016 -14485021 - ID_B1 SINE B4 -123 101 3 1 1615 602 263 7 15 chr6 135032189 135032324 -14484713 - B1F2 SINE Alu 0 149 16 1 1615 452 277 84 45 chr6 135032803 135032958 -14484079 - RSINE1 SINE B4 0 165 5 1 1615 848 146 15 0 chr6 135032967 135033097 -14483940 - ID_B1 SINE B4 0 224 93 1 1615 342 0 0 0 chr6 135034729 135034767 -14482270 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1615 342 194 16 0 chr6 135034959 135035021 -14482016 + B1_Mur1 SINE Alu 47 109 -40 1 1615 495 147 124 21 chr6 135035033 135035130 -14481907 + PB1D7 SINE Alu 12 118 -2 1 1615 2111 145 22 54 chr6 135035434 135035547 -14481490 - ORR1B1 LTR MaLR -1 393 299 1 1615 1583 52 0 0 chr6 135035547 135035738 -14481299 - B2_Mm1a SINE B2 -1 192 2 1 1615 2111 145 22 54 chr6 135035738 135035995 -14481042 - ORR1B1 LTR MaLR -96 298 35 1 1615 429 267 39 19 chr6 135036002 135036105 -14480932 + PB1D7 SINE Alu 1 105 -15 1 1615 920 331 133 32 chr6 135036118 135036621 -14480416 - MER21B LTR ERV1 -13 850 297 1 1615 267 31 0 0 chr6 135036650 135036682 -14480355 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1615 368 52 0 33 chr6 135036682 135036741 -14480296 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 1 1615 342 255 122 0 chr6 135036769 135036867 -14480170 - B1F SINE Alu -21 128 19 1 1615 375 250 54 0 chr6 135036975 135037067 -14479970 - PB1D9 SINE Alu -6 114 18 1 1615 342 230 126 0 chr6 135037067 135037154 -14479883 - ID_B1 SINE B4 -6 218 121 1 1615 1689 26 0 0 chr6 135037230 135037422 -14479615 - B2_Mm1t SINE B2 0 193 2 1 1615 441 95 0 0 chr6 135038540 135038603 -14478434 + (TTAA)n Simple_repeat Simple_repeat 1 63 0 1 1615 295 318 118 0 chr6 135038625 135038710 -14478327 - RSINE1 SINE B4 -57 108 14 1 1615 625 294 39 11 chr6 135038749 135038931 -14478106 - B3A SINE B2 -5 193 7 1 1615 333 272 26 88 chr6 135038939 135039052 -14477985 - PB1D7 SINE Alu -14 106 1 1 1615 216 0 0 0 chr6 135039063 135039087 -14477950 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1615 791 271 145 21 chr6 135039097 135039338 -14477699 - B4A SINE B4 -8 284 14 1 1615 362 295 70 0 chr6 135039342 135039471 -14477566 - B1F SINE Alu -11 138 1 1 1615 261 0 0 0 chr6 135040224 135040253 -14476784 + (TTCG)n Simple_repeat Simple_repeat 4 32 0 1 1615 621 40 0 0 chr6 135040253 135040328 -14476709 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 1 1615 450 275 73 0 chr6 135040330 135040439 -14476598 - B1F SINE Alu -14 135 19 1 1615 366 319 87 34 chr6 135040439 135040477 -14476560 - ID_B1 SINE B4 -14 210 56 1 1615 419 182 283 0 chr6 135040477 135040576 -14476461 + B1_Mus1 SINE Alu 1 127 -21 1 1615 241 263 28 65 chr6 135040576 135040720 -14476317 - RMER17A LTR ERVK -257 489 256 1 1615 224 29 0 79 chr6 135040727 135040765 -14476272 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1 1615 234 315 20 110 chr6 135040897 135040997 -14476040 + B1F1 SINE Alu 1 91 -58 1 1615 446 290 0 9 chr6 135041042 135041150 -14475887 + ID_B1 SINE B4 106 212 -12 1 1615 690 265 10 8 chr6 135041202 135041356 -14475681 + ID_B1 SINE B4 87 246 -46 1 1615 219 69 0 0 chr6 135041367 135041396 -14475641 + (AGGGGG)n Simple_repeat Simple_repeat 4 32 0 1 1615 998 222 41 5 chr6 135042008 135042203 -14474834 + B3 SINE B2 1 202 -14 1 1615 536 176 213 25 chr6 135042467 135042589 -14474448 + B1_Mm SINE Alu 2 146 -1 1 1615 879 206 6 48 chr6 135042609 135042777 -14474260 + RSINE1 SINE B4 3 163 -2 1 1615 354 340 36 27 chr6 135043858 135043970 -14473067 - B1F SINE Alu -35 114 2 1 1615 1113 174 77 0 chr6 135044056 135044252 -14472785 + B3 SINE B2 1 211 -5 1 1615 468 0 0 0 chr6 135044454 135044506 -14472531 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1615 479 254 108 0 chr6 135044617 135044747 -14472290 + B1_Mur1 SINE Alu 1 144 -5 1 1615 595 150 8 16 chr6 135044747 135044869 -14472168 + GA-rich Low_complexity Low_complexity 3 123 0 1 1615 729 0 0 0 chr6 135044878 135044959 -14472078 + (GAA)n Simple_repeat Simple_repeat 1 81 0 1 1615 258 143 0 0 chr6 135045323 135045372 -14471665 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1615 435 281 0 0 chr6 135045380 135045462 -14471575 - B4 SINE B4 -2 290 209 1 1615 664 252 18 61 chr6 135045472 135045637 -14471400 - RSINE1 SINE B4 0 165 8 1 1615 849 226 30 78 chr6 135045651 135045881 -14471156 - B4 SINE B4 -73 219 1 1 1615 534 274 137 98 chr6 135046057 135046385 -14470652 - ORR1E LTR MaLR 0 367 27 1 1615 671 136 9 52 chr6 135046569 135046685 -14470352 - B1_Mur3 SINE Alu -20 129 19 1 1615 1279 75 69 6 chr6 135046734 135046909 -14470128 + B2_Mm2 SINE B2 5 190 -5 1 1615 225 0 0 0 chr6 135046910 135046935 -14470102 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 1615 751 200 1 2 chr6 135046946 135047079 -14469958 - RSINE1 SINE B4 -29 136 5 1 1615 2569 145 24 22 chr6 135047102 135047116 -14469921 + MTC LTR MaLR 5 11 -410 1 1615 787 238 70 5 chr6 135047116 135047302 -14469735 + B3 SINE B2 2 199 -17 1 1615 2569 145 24 22 chr6 135047302 135047703 -14469334 + MTC LTR MaLR 12 421 0 1 1615 2414 176 61 23 chr6 135048158 135048635 -14468402 - RLTR24 LTR ERV1 -34 495 1 1 1615 240 328 0 0 chr6 135048661 135048725 -14468312 - ORR1E LTR MaLR -248 111 48 1 1615 641 217 0 8 chr6 135048750 135048871 -14468166 - B1F SINE Alu -17 132 13 1 1615 359 328 0 52 chr6 135048871 135048885 -14468152 - ID_B1 SINE B4 -17 207 80 1 1615 421 236 70 35 chr6 135048894 135049008 -14468029 - PB1D9 SINE Alu 0 120 3 1 1615 337 310 42 14 chr6 135049657 135049801 -14467236 - B1F2 SINE Alu 0 149 2 1 1615 570 250 6 47 chr6 135049828 135049966 -14467071 + RSINE1 SINE B4 4 138 -27 1 1615 461 300 0 24 chr6 135050121 135050244 -14466793 - PB1D7 SINE Alu 0 120 1 1 1615 478 258 2 52 chr6 135050266 135050391 -14466646 - B1F SINE Alu -2 115 1 1 1615 886 108 0 23 chr6 135050532 135050665 -14466372 - B1_Mur3 SINE Alu -8 141 12 1 1615 416 186 17 121 chr6 135050569 135050685 -14466352 - MT2B LTR ERVL -344 257 154 1 1615 1485 69 5 0 chr6 135050733 135050922 -14466115 - B2_Mm1a SINE B2 -3 190 1 1 1615 333 285 82 50 chr6 135051068 135051227 -14465810 + MER96B DNA hAT 13 176 -241 1 1615 451 282 15 90 chr6 135051420 135051639 -14465398 - B3A SINE B2 -16 200 1 1 1615 622 238 8 8 chr6 135051951 135052078 -14464959 - ID_B1 SINE B4 -5 219 93 1 1615 1769 258 84 63 chr6 135052227 135053014 -14464023 - RLTR40 LTR ERVK -13 804 2 1 1615 1047 262 112 39 chr6 135053015 135053373 -14463664 + Lx8 LINE L1 6974 7357 -116 1 1615 1158 80 6 11 chr6 135054047 135054225 -14462812 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 1 1615 409 156 71 5 chr6 135054226 135054310 -14462727 - B1_Mur2 SINE Alu -10 139 53 1 1615 447 263 20 0 chr6 135054387 135054486 -14462551 - RSINE1 SINE B4 -61 104 4 1 1615 286 190 24 16 chr6 135054497 135054620 -14462417 + CT-rich Low_complexity Low_complexity 2 125 0 1 1615 272 290 31 52 chr6 135054759 135054919 -14462118 + L1M3 LINE L1 5446 5604 -567 1 1615 538 279 7 7 chr6 135054922 135055059 -14461978 + RSINE1 SINE B4 4 140 -25 1 1615 339 216 153 0 chr6 135055122 135055233 -14461804 + L1M3 LINE L1 5615 5742 -429 1 1615 515 298 60 71 chr6 135055385 135055667 -14461370 + B4 SINE B4 2 280 -12 1 1615 728 228 63 17 chr6 135055767 135055941 -14461096 + B3A SINE B2 4 185 -13 1 1615 1276 207 65 111 chr6 135056389 135056786 -14460251 - MTE2a LTR MaLR 0 379 1 1 1615 561 297 30 9 chr6 135057978 135058127 -14458910 - ID_B1 SINE B4 -53 239 86 1 1615 263 308 65 52 chr6 135058000 135058154 -14458883 + YREP_Mm Unknown Unknown 186 341 -1471 1 1615 574 256 17 14 chr6 135058387 135058532 -14458505 - B1F1 SINE Alu -2 147 1 2 1615 27 29 0 0 chr6 135058560 135058594 -14458443 + AT_rich Low_complexity Low_complexity 1 34 0 2 1615 216 321 19 0 chr6 135058596 135058649 -14458388 + ID4 SINE ID 28 81 -2 2 1615 1260 92 0 0 chr6 135058649 135059009 -14458028 + (CA)n Simple_repeat Simple_repeat 1 360 0 2 1615 216 0 0 0 chr6 135060043 135060067 -14456970 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1615 447 19 0 0 chr6 135060067 135060118 -14456919 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1615 21 0 0 0 chr6 135060153 135060174 -14456863 + AT_rich Low_complexity Low_complexity 1 21 0 2 1615 180 125 0 0 chr6 135060332 135060364 -14456673 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 1615 268 257 28 14 chr6 135060370 135060441 -14456596 - ID4_ SINE ID -10 73 2 2 1615 21 0 0 0 chr6 135060458 135060479 -14456558 + AT_rich Low_complexity Low_complexity 1 21 0 2 1615 600 266 42 0 chr6 135060500 135060643 -14456394 - RSINE1 SINE B4 -14 151 3 2 1615 458 274 137 11 chr6 135060659 135060943 -14456094 - L1MA6 LINE L1 -24 6276 5957 2 1615 214 250 26 65 chr6 135060944 135061021 -14456016 + RSINE1 SINE B4 37 110 -55 2 1615 450 0 0 0 chr6 135061022 135061072 -14455965 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1615 420 279 36 0 chr6 135061844 135061955 -14455082 + PB1D10 SINE Alu 1 115 -2 2 1615 276 53 0 0 chr6 135061965 135062003 -14455034 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 2 1615 220 164 32 16 chr6 135062003 135062055 -14454982 + A-rich Low_complexity Low_complexity 10 62 0 2 1615 276 259 35 0 chr6 135062115 135062173 -14454864 - B4 SINE B4 -9 283 224 2 1615 646 295 31 71 chr6 135062188 135062443 -14454594 - B4A SINE B4 0 292 48 2 1615 356 234 0 0 chr6 135062524 135062588 -14454449 - B4 SINE B4 -227 65 2 2 1615 378 313 48 79 chr6 135062772 135063001 -14454036 - L3b LINE CR1 -176 306 85 2 1615 321 256 12 0 chr6 135063196 135063278 -14453759 - L3b LINE CR1 -393 89 7 2 1615 1121 118 6 0 chr6 135063775 135063953 -14453084 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2 1615 239 171 26 26 chr6 135063958 135064036 -14453001 + CT-rich Low_complexity Low_complexity 1 78 0 2 1615 240 254 13 101 chr6 135064056 135064135 -14452902 - MT2B2 LTR ERVL -338 246 175 2 1615 387 250 0 13 chr6 135064064 135064141 -14452896 - B1_Mus1 SINE Alu -67 81 6 2 1615 222 235 8 228 chr6 135064268 135064395 -14452642 - B1F SINE Alu -21 128 30 2 1615 330 87 0 0 chr6 135064591 135064637 -14452400 + (CAA)n Simple_repeat Simple_repeat 3 48 0 2 1615 414 237 61 10 chr6 135065653 135065751 -14451286 - ID_B1 SINE B4 -8 216 114 2 1615 1637 138 0 26 chr6 135067507 135067774 -14449263 + Lx2 LINE L1 6738 6997 0 2 1615 366 85 0 0 chr6 135068002 135068061 -14448976 + (A)n Simple_repeat Simple_repeat 1 59 0 2 1615 684 198 5 23 chr6 135069494 135069631 -14447406 + B1_Mus1 SINE Alu 1 141 -9 2 1615 180 0 0 0 chr6 135069631 135069651 -14447386 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1615 1594 163 48 48 chr6 135070784 135071100 -14445937 + RMER5 LTR ERV1 1 316 -218 2 1615 1345 183 75 0 chr6 135071308 135071548 -14445489 + RMER5 LTR ERV1 277 534 0 2 1615 1018 135 0 7 chr6 135071657 135071806 -14445231 - B1_Mus1 SINE Alu 0 148 1 2 1615 618 293 42 59 chr6 135072051 135072290 -14444747 + MER45C DNA Tip100 62 296 -657 2 1615 412 224 20 10 chr6 135072647 135072746 -14444291 - PB1D10 SINE Alu -17 100 1 2 1615 946 224 19 28 chr6 135072772 135072988 -14444049 + B3 SINE B2 3 216 0 2 1615 468 243 26 13 chr6 135073009 135073133 -14443904 + B3A SINE B2 27 152 -41 2 1615 845 237 0 34 chr6 135073280 135073485 -14443552 - B3A SINE B2 0 198 1 2 1615 967 326 84 22 chr6 135073501 135074037 -14443000 + Charlie9 DNA MER1_type 522 1090 -1667 2 1615 489 17 0 0 chr6 135074262 135074320 -14442717 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1615 539 161 202 8 chr6 135074326 135074445 -14442592 + B1F SINE Alu 1 142 -7 2 1615 198 0 0 0 chr6 135074513 135074535 -14442502 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 2 1615 593 312 129 40 chr6 135074729 135075079 -14441958 + MLT1H1 LTR MaLR 10 390 -165 2 1615 457 275 112 60 chr6 135075265 135075532 -14441505 + Charlie9 DNA MER1_type 1950 2230 -527 2 1615 1069 241 44 34 chr6 135075795 135076094 -14440943 + MTEb LTR MaLR 11 308 -71 2 1615 1915 231 52 17 chr6 135076299 135076775 -14440262 + Lx2B LINE L1 6505 6997 -3 2 1615 527 314 39 26 chr6 135076775 135077007 -14440030 - RLTR42-int LTR ERVK -4135 1387 1153 2 1615 7275 73 12 11 chr6 135077107 135078957 -14438080 - L1VL2 LINE L1 -1672 1943 93 2 1615 1182 112 0 0 chr6 135078961 135079139 -14437898 + (TTCTC)n Simple_repeat Simple_repeat 2 179 0 2 1615 229 37 0 0 chr6 135079140 135079167 -14437870 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 2 1615 538 87 48 0 chr6 135079167 135079270 -14437767 + (TC)n Simple_repeat Simple_repeat 2 109 0 2 1615 207 0 0 0 chr6 135079270 135079293 -14437744 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 2 1615 1413 51 0 0 chr6 135079293 135079471 -14437566 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2 1615 668 101 0 0 chr6 135079472 135079561 -14437476 - BC1_Mm scRNA scRNA -63 89 1 2 1615 195 344 0 0 chr6 135079969 135080059 -14436978 + L2a LINE L2 3337 3426 0 2 1615 245 118 0 19 chr6 135080108 135080147 -14436890 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 2 1615 1984 118 35 68 chr6 135080147 135080485 -14436552 + ORR1A2 LTR MaLR 1 327 0 2 1615 245 118 0 19 chr6 135080485 135080497 -14436540 + (CCAA)n Simple_repeat Simple_repeat 1 12 0 2 1615 226 299 103 13 chr6 135080998 135081076 -14435961 - MIR SINE MIR -165 97 13 2 1615 212 300 50 0 chr6 135081373 135081433 -14435604 - B1F2 SINE Alu -40 109 47 2 1615 192 233 23 0 chr6 135081567 135081610 -14435427 + MIRb SINE MIR 217 260 -8 2 1615 724 250 95 11 chr6 135081661 135081732 -14435305 - B3 SINE B2 -10 206 127 2 1615 792 0 0 0 chr6 135081732 135081820 -14435217 + (GAA)n Simple_repeat Simple_repeat 1 88 0 2 1615 724 250 95 11 chr6 135081820 135081938 -14435099 - B3 SINE B2 -90 126 1 2 1615 250 242 0 31 chr6 135081938 135082002 -14435035 - B1F SINE Alu 0 149 88 2 1615 432 0 0 0 chr6 135082096 135082144 -14434893 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1615 1163 169 10 20 chr6 135082146 135082345 -14434692 - ID_B1 SINE B4 -13 211 15 2 1615 741 250 21 21 chr6 135082616 135082804 -14434233 - B3A SINE B2 -6 192 5 2 1615 756 0 0 0 chr6 135082822 135082906 -14434131 + (TTTTA)n Simple_repeat Simple_repeat 2 85 0 2 1615 196 106 0 78 chr6 135083781 135083832 -14433205 + CT-rich Low_complexity Low_complexity 2 48 0 2 1615 433 194 184 9 chr6 135084712 135084821 -14432216 - B1F1 SINE Alu -15 134 7 2 1615 305 221 156 74 chr6 135084821 135084834 -14432203 - ID_B1 SINE B4 -15 209 78 2 1615 339 267 89 75 chr6 135084837 135084853 -14432184 - B1F SINE Alu -1 148 52 2 1615 474 274 48 0 chr6 135084853 135084977 -14432060 - ID_B1 SINE B4 -10 214 85 2 1615 230 373 13 60 chr6 135085473 135085624 -14431413 + MLT1L LTR MaLR 242 385 -225 2 1615 183 325 58 11 chr6 135085983 135086070 -14430967 + L2 LINE L2 2737 2827 -592 2 1615 352 242 150 106 chr6 135086130 135086255 -14430782 + B2_Mm2 SINE B2 1 130 -65 2 1615 381 93 0 0 chr6 135086255 135086309 -14430728 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1615 352 242 150 106 chr6 135086309 135086363 -14430674 + B2_Mm2 SINE B2 131 188 -7 2 1615 604 260 6 19 chr6 135087259 135087416 -14429621 + B3A SINE B2 1 155 -43 2 1615 510 46 0 0 chr6 135087417 135087482 -14429555 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1615 968 224 17 11 chr6 135089431 135089651 -14427386 + B3A SINE B2 2 215 -1 2 1615 226 321 96 75 chr6 135089712 135089911 -14427126 + MIR SINE MIR 33 235 -27 2 1615 225 0 0 0 chr6 135090105 135090130 -14426907 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1615 381 22 0 0 chr6 135090133 135090179 -14426858 + (CAGAGA)n Simple_repeat Simple_repeat 2 47 0 2 1615 484 219 131 15 chr6 135090196 135090326 -14426711 - RSINE1 SINE B4 -19 146 2 2 1615 540 0 0 0 chr6 135090524 135090584 -14426453 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1615 213 39 0 0 chr6 135090694 135090720 -14426317 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 1615 321 252 159 41 chr6 135090734 135090879 -14426158 - RSINE1 SINE B4 -1 164 3 2 1615 1083 231 51 64 chr6 135090911 135091207 -14425830 + MTEb LTR MaLR 1 292 -87 2 1615 537 16 0 0 chr6 135092142 135092204 -14424833 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1615 1322 227 80 65 chr6 135092278 135092434 -14424603 - MTD LTR MaLR -15 404 239 2 1615 1138 114 166 0 chr6 135092434 135092627 -14424410 - URR1A DNA MER1_type 0 226 2 2 1615 1322 226 83 68 chr6 135092627 135092835 -14424202 - MTD LTR MaLR -174 245 44 2 1615 2129 138 159 3 chr6 135092835 135093199 -14423838 + MTC LTR MaLR 1 421 0 2 1615 1322 226 83 68 chr6 135093199 135093242 -14423795 - MTD LTR MaLR -376 43 4 2 1615 259 307 107 0 chr6 135093501 135093576 -14423461 - MIRb SINE MIR -58 210 128 2 1615 225 324 0 0 chr6 135093648 135093719 -14423318 - ID4 SINE ID -11 72 2 2 1615 486 243 6 92 chr6 135093741 135093904 -14423133 - B1F SINE Alu 0 149 1 2 1615 677 289 0 25 chr6 135094116 135094259 -14422778 + RSINE1 SINE B4 3 141 -24 2 1615 504 48 0 0 chr6 135094259 135094322 -14422715 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 2 1615 677 289 0 25 chr6 135094322 135094341 -14422696 + RSINE1 SINE B4 142 160 -5 2 1615 561 171 188 9 chr6 135094341 135094453 -14422584 + B1_Mur1 SINE Alu 12 143 -6 2 1615 243 146 0 0 chr6 135094463 135094504 -14422533 + (CAG)n Simple_repeat Simple_repeat 1 41 0 2 1615 352 287 53 0 chr6 135094863 135094957 -14422080 - PB1D10 SINE Alu -1 116 18 2 1615 900 257 68 32 chr6 135095108 135095389 -14421648 - B4A SINE B4 -1 291 1 2 1615 480 300 61 57 chr6 135095461 135095740 -14421297 - B4 SINE B4 -11 281 2 3 1615 301 254 130 108 chr6 135095765 135095950 -14421087 + L1MC5 LINE L1 6718 6906 -1055 3 1615 389 211 192 0 chr6 135095981 135096085 -14420952 + ID_B1 SINE B4 94 217 -7 3 1615 312 319 26 86 chr6 135096093 135096244 -14420793 + B4A SINE B4 1 142 -150 3 1615 267 169 12 49 chr6 135096502 135096583 -14420454 + (CAAAC)n Simple_repeat Simple_repeat 2 79 0 3 1615 226 327 87 12 chr6 135096593 135096754 -14420283 + L1MC5 LINE L1 6975 7147 -814 3 1615 587 309 26 7 chr6 135097161 135097314 -14419723 + RSINE1 SINE B4 1 156 -9 3 1615 323 78 0 19 chr6 135097321 135097373 -14419664 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1615 422 278 21 0 chr6 135097446 135097543 -14419494 + PB1D10 SINE Alu 1 99 -18 3 1615 240 35 0 0 chr6 135097557 135097586 -14419451 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1615 1047 262 104 15 chr6 135097946 135098272 -14418765 + ORR1D2 LTR MaLR 1 355 -15 3 1615 1566 219 72 6 chr6 135099138 135099459 -14417578 + RMER1B Other Other 45 386 -680 3 1615 1066 220 81 24 chr6 135099445 135100078 -14416959 + RMER1A Other Other 1 624 -442 3 1615 348 155 56 0 chr6 135100077 135100148 -14416889 + RMER1B Other Other 991 1065 -1 3 1615 268 262 0 58 chr6 135100328 135100397 -14416640 - MER96 DNA hAT -110 65 1 3 1615 401 0 20 0 chr6 135100607 135100656 -14416381 + (TCTCC)n Simple_repeat Simple_repeat 1 50 0 3 1615 1384 39 6 6 chr6 135100658 135100838 -14416199 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 3 1615 1107 82 0 26 chr6 135100855 135101006 -14416031 - B1_Mus1 SINE Alu 0 148 2 3 1615 804 275 102 97 chr6 135101349 135101638 -14415399 + RLTR26 LTR ERVK 13 300 -342 3 1615 192 77 0 0 chr6 135101638 135101664 -14415373 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1615 804 279 123 83 chr6 135101664 135101848 -14415189 + RLTR26 LTR ERVK 301 548 -79 3 1615 270 73 0 0 chr6 135102296 135102337 -14414700 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1615 351 60 0 0 chr6 135102394 135102444 -14414593 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1615 333 62 0 0 chr6 135102502 135102550 -14414487 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1615 651 267 34 10 chr6 135103194 135103402 -14413635 - B3 SINE B2 0 216 4 3 1615 364 206 14 14 chr6 135103410 135103484 -14413553 - B2_Mm2 SINE B2 -121 74 1 3 1615 405 0 0 0 chr6 135103564 135103609 -14413428 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1615 334 243 25 0 chr6 135103803 135103907 -14413130 + PB1D10 SINE Alu 2 109 -8 3 1615 338 188 0 0 chr6 135103913 135103977 -14413060 + ID4 SINE ID 4 67 -16 3 1615 561 186 21 0 chr6 135104329 135104426 -14412611 + B1_Mur2 SINE Alu 37 135 -14 3 1615 1138 107 50 17 chr6 135104455 135104635 -14412402 + B2_Mm2 SINE B2 2 187 -8 3 1615 234 0 0 0 chr6 135104948 135104974 -14412063 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1615 668 197 57 0 chr6 135105480 135105602 -14411435 + ID_B1 SINE B4 92 220 -4 3 1615 1128 15 0 0 chr6 135105739 135105869 -14411168 + (GAAA)n Simple_repeat Simple_repeat 2 131 0 3 1615 572 258 80 19 chr6 135105875 135106063 -14410974 + B3A SINE B2 1 186 -9 3 1615 502 231 37 0 chr6 135106180 135106288 -14410749 + PB1D10 SINE Alu 6 117 0 3 1615 266 289 237 0 chr6 135106288 135106305 -14410732 + B4A SINE B4 134 246 -46 3 1615 548 355 82 12 chr6 135106440 135106854 -14410183 + L1MA5 LINE L1 5477 5919 -381 3 1615 243 88 0 0 chr6 135107006 135107040 -14409997 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1615 651 289 0 0 chr6 135107185 135107327 -14409710 + RSINE1 SINE B4 15 156 -9 3 1615 480 77 0 0 chr6 135107333 135107398 -14409639 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1615 249 257 14 0 chr6 135107586 135107660 -14409377 + ID4 SINE ID 2 76 -7 3 1615 281 83 46 35 chr6 135107784 135107871 -14409166 + (TG)n Simple_repeat Simple_repeat 2 89 0 3 1615 888 126 0 0 chr6 135108920 135109047 -14407990 - B1_Mur3 SINE Alu -14 135 9 3 1615 972 208 22 11 chr6 135109072 135109257 -14407780 - B3 SINE B2 -28 188 2 3 1615 448 79 40 0 chr6 135109793 135109869 -14407168 + L1Md_F2 LINE L1 6504 6582 0 3 1615 341 204 122 22 chr6 135109957 135110047 -14406990 - PB1D9 SINE Alu -19 101 3 3 1615 434 284 154 55 chr6 135110105 135110306 -14406731 + ID_B1 SINE B4 1 221 -3 3 1615 243 146 0 0 chr6 135110433 135110474 -14406563 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1615 332 170 22 33 chr6 135110493 135110584 -14406453 + (CAGAGA)n Simple_repeat Simple_repeat 6 95 0 3 1615 386 183 47 0 chr6 135110584 135110753 -14406284 + (CAGA)n Simple_repeat Simple_repeat 2 178 0 3 1615 275 176 47 16 chr6 135110770 135110897 -14406140 + (CAGA)n Simple_repeat Simple_repeat 4 134 0 3 1615 264 171 16 33 chr6 135110940 135111061 -14405976 + (CAGA)n Simple_repeat Simple_repeat 2 120 0 3 1615 183 184 0 0 chr6 135111059 135111097 -14405940 + GA-rich Low_complexity Low_complexity 3 40 0 3 1615 25 0 0 0 chr6 135111170 135111195 -14405842 + AT_rich Low_complexity Low_complexity 1 25 0 3 1615 213 331 109 51 chr6 135111441 135111597 -14405440 - MIR3 SINE MIR -8 200 36 3 1615 234 0 0 0 chr6 135111818 135111844 -14405193 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1615 510 161 0 0 chr6 135112025 135112118 -14404919 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 1615 807 231 38 0 chr6 135112118 135112278 -14404759 - B3 SINE B2 -50 166 1 3 1615 898 246 4 118 chr6 135112278 135112539 -14404498 - B4 SINE B4 -61 231 2 3 1615 334 267 41 49 chr6 135112571 135112693 -14404344 - B1F SINE Alu -28 121 1 3 1615 714 208 176 27 chr6 135112773 135112961 -14404076 + B3 SINE B2 1 216 0 3 1615 825 246 39 5 chr6 135113650 135113858 -14403179 - B3 SINE B2 0 216 2 3 1615 539 175 0 30 chr6 135113969 135114069 -14402968 - PB1D7 SINE Alu -11 109 13 3 1615 242 278 20 49 chr6 135113996 135114098 -14402939 - B4A SINE B4 -122 170 72 3 1615 206 288 82 67 chr6 135114104 135114238 -14402799 + L2b LINE L2 3021 3156 -219 3 1615 1167 63 7 29 chr6 135114405 135114684 -14402353 + (TCCC)n Simple_repeat Simple_repeat 1 273 0 3 1615 234 0 0 0 chr6 135114684 135114710 -14402327 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 3 1615 315 167 365 12 chr6 135114925 135115010 -14402027 + PB1D10 SINE Alu 1 115 -2 3 1615 279 0 0 0 chr6 135115027 135115058 -14401979 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 3 1615 287 269 124 9 chr6 135115067 135115172 -14401865 + PB1D10 SINE Alu 1 117 0 3 1615 267 133 0 0 chr6 135115181 135115226 -14401811 + (GAAA)n Simple_repeat Simple_repeat 4 48 0 3 1615 346 308 101 42 chr6 135115581 135115798 -14401239 - MIR SINE MIR -1 261 32 3 1615 684 0 0 0 chr6 135116073 135116149 -14400888 + (GA)n Simple_repeat Simple_repeat 1 76 0 3 1615 310 182 169 72 chr6 135116281 135116364 -14400673 - ID_B1 SINE B4 -56 168 78 3 1615 480 247 0 0 chr6 135116428 135116521 -14400516 - B3A SINE B2 -105 93 1 3 1615 548 254 42 0 chr6 135116609 135116727 -14400310 - B1F SINE Alu -26 123 1 3 1615 571 252 14 28 chr6 135117602 135117745 -14399292 + B1F SINE Alu 1 141 -8 3 1615 413 264 55 0 chr6 135118411 135118521 -14398516 - PB1D10 SINE Alu -1 116 1 3 1615 473 243 63 14 chr6 135118590 135118732 -14398305 - B1F SINE Alu 0 149 1 3 1615 429 275 66 16 chr6 135118785 135118907 -14398130 - B3A SINE B2 -70 128 1 3 1615 1421 259 26 31 chr6 135119296 135119679 -14397358 + MTD LTR MaLR 1 381 -38 3 1615 44 75 0 0 chr6 135119685 135119778 -14397259 + AT_rich Low_complexity Low_complexity 1 93 0 3 1615 300 225 32 43 chr6 135120316 135120409 -14396628 - MER104 DNA Tc2 -3 178 87 3 1615 1305 107 11 0 chr6 135120411 135120589 -14396448 + B2_Mm1t SINE B2 1 180 -13 3 1615 364 105 0 28 chr6 135120635 135120750 -14396287 + B2_Mm2 SINE B2 47 194 -1 3 1615 229 266 69 101 chr6 135120780 135120939 -14396098 + YREP_Mm Unknown Unknown 141 294 -1518 3 1615 570 265 0 25 chr6 135120841 135120961 -14396076 - PB1D10 SINE Alu 0 117 1 3 1615 465 290 12 44 chr6 135120961 135121017 -14396020 - ID_B1 SINE B4 -200 92 42 3 1615 417 235 173 8 chr6 135122213 135122346 -14394691 - RSINE1 SINE B4 -9 156 2 3 1615 261 119 0 0 chr6 135122427 135122469 -14394568 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1615 211 68 91 0 chr6 135122577 135122621 -14394416 + (CATAT)n Simple_repeat Simple_repeat 2 49 0 3 1615 475 166 25 6 chr6 135123218 135123376 -14393661 + (TG)n Simple_repeat Simple_repeat 2 162 0 3 1615 2422 86 3 9 chr6 135123534 135123862 -14393175 + ORR1A3 LTR MaLR 1 326 0 3 1615 369 0 0 0 chr6 135124000 135124041 -14392996 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1615 684 0 0 0 chr6 135124183 135124259 -14392778 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1615 204 145 300 14 chr6 135124434 135124504 -14392533 + MER5A DNA MER1_type 36 125 -64 3 1615 299 237 0 95 chr6 135124554 135124638 -14392399 - ID_B1 SINE B4 -5 219 144 3 1615 312 297 30 108 chr6 135124688 135124708 -14392329 + B4 SINE B4 70 212 -80 3 1615 563 265 35 42 chr6 135124708 135124840 -14392197 + B1_Mur2 SINE Alu 1 135 -14 3 1615 627 71 0 0 chr6 135124840 135124925 -14392112 + (GA)n Simple_repeat Simple_repeat 2 86 0 3 1615 545 260 197 15 chr6 135125026 135125229 -14391808 - RMER15 LTR ERVL 0 575 336 3 1615 726 138 22 9 chr6 135125746 135125878 -14391159 - B1_Mus2 SINE Alu -10 138 1 3 1615 600 264 81 7 chr6 135125925 135126074 -14390963 + B3A SINE B2 4 163 -35 3 1615 24 53 0 0 chr6 135126094 135126132 -14390905 + AT_rich Low_complexity Low_complexity 1 38 0 3 1615 749 239 22 49 chr6 135126138 135126323 -14390714 + B3A SINE B2 3 182 -16 3 1615 1418 94 16 0 chr6 135126497 135126688 -14390349 - B2_Mm2 SINE B2 0 195 2 4 1615 851 230 143 26 chr6 135126925 135127197 -14389840 + MTD LTR MaLR 102 405 -14 4 1615 329 311 36 101 chr6 135127240 135127336 -14389701 + MLT1G LTR MaLR 220 319 -272 4 1615 255 324 15 0 chr6 135127336 135127404 -14389633 + ID4 SINE ID 1 69 -14 4 1615 329 311 36 101 chr6 135127404 135127475 -14389562 + MLT1G LTR MaLR 320 375 -216 4 1615 24 0 0 0 chr6 135127630 135127654 -14389383 + AT_rich Low_complexity Low_complexity 1 24 0 4 1615 320 260 10 40 chr6 135127667 135127767 -14389270 + PB1D10 SINE Alu 2 98 -19 4 1615 804 147 0 0 chr6 135127803 135127939 -14389098 + (GA)n Simple_repeat Simple_repeat 2 137 0 4 1615 239 291 0 18 chr6 135127977 135128033 -14389004 + B1F2 SINE Alu 1 55 -94 4 1615 983 151 0 0 chr6 135128123 135128262 -14388775 + B1_Mur2 SINE Alu 1 139 -10 4 1615 1416 62 40 0 chr6 135128892 135129069 -14387968 + B2_Mm2 SINE B2 2 185 -10 4 1615 315 0 0 0 chr6 135129111 135129146 -14387891 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1615 468 333 6 41 chr6 135129409 135129581 -14387456 - Tigger7 DNA MER2_type -1 2490 2325 4 1615 654 218 7 29 chr6 135129589 135129726 -14387311 + RSINE1 SINE B4 11 144 -21 4 1615 815 294 50 46 chr6 135129815 135130075 -14386962 - Tigger7 DNA MER2_type -2026 465 205 4 1615 1170 79 0 0 chr6 135130075 135130304 -14386733 + (TCCC)n Simple_repeat Simple_repeat 1 229 0 4 1615 603 214 0 0 chr6 135130304 135130416 -14386621 - PB1D9 SINE Alu -8 112 1 4 1615 32 0 0 0 chr6 135130661 135130693 -14386344 + AT_rich Low_complexity Low_complexity 1 32 0 4 1615 986 245 5 5 chr6 135130698 135130907 -14386130 - B3 SINE B2 -6 210 2 4 1615 1182 256 105 34 chr6 135130945 135131297 -14385740 + MTEa LTR MaLR 2 378 -1 4 1615 706 239 25 89 chr6 135131321 135131523 -14385514 - B3A SINE B2 -8 190 2 4 1615 359 255 43 19 chr6 135131625 135131751 -14385286 - L1MA6 LINE L1 -63 6237 6112 4 1615 296 274 186 8 chr6 135131761 135131879 -14385158 + B1F SINE Alu 11 149 0 4 1615 502 251 150 1 chr6 135131897 135132131 -14384906 - L1MA6 LINE L1 -197 6103 5831 4 1615 587 108 11 0 chr6 135132943 135133036 -14384001 + (TCCC)n Simple_repeat Simple_repeat 3 96 0 4 1615 351 167 106 12 chr6 135133056 135133141 -14383896 - B3A SINE B2 -1 197 105 4 1615 572 151 0 0 chr6 135133222 135133308 -14383729 - B1_Mus2 SINE Alu -10 137 52 4 1615 251 237 0 33 chr6 135133270 135133331 -14383706 - 4.5SRNA scRNA scRNA -8 86 28 4 1615 421 252 53 18 chr6 135133417 135133530 -14383507 - PB1D7 SINE Alu -1 119 3 4 1615 210 143 0 0 chr6 135133749 135133784 -14383253 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 4 1615 312 264 40 19 chr6 135133787 135133910 -14383127 - PB1D10 SINE Alu -22 127 6 4 1615 316 297 106 29 chr6 135134318 135134422 -14382615 - PB1D10 SINE Alu 0 117 6 4 1615 299 250 23 145 chr6 135134683 135134814 -14382223 - PB1D7 SINE Alu -5 115 1 4 1615 1308 79 17 0 chr6 135134881 135135058 -14381979 - B2_Mm2 SINE B2 -7 188 9 4 1615 28 29 0 0 chr6 135135086 135135121 -14381916 + AT_rich Low_complexity Low_complexity 1 35 0 4 201 891 53 0 0 chr6 135135125 135135238 -14381799 + (TC)n Simple_repeat Simple_repeat 2 114 0 4 1616 369 0 0 0 chr6 135135238 135135278 -14381759 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1616 592 208 19 0 chr6 135135286 135135392 -14381645 - B3A SINE B2 -88 110 3 4 1616 210 37 0 0 chr6 135135412 135135439 -14381598 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1616 344 296 89 22 chr6 135135440 135135575 -14381462 - B3A SINE B2 -27 171 28 4 1616 1918 42 29 0 chr6 135135646 135135887 -14381150 - L1Md_F3 LINE L1 0 6584 6337 4 1616 309 284 67 78 chr6 135136078 135136327 -14380710 - MER34 LTR ERV1 -16 606 260 4 1616 537 199 0 0 chr6 135136504 135136645 -14380392 + (TG)n Simple_repeat Simple_repeat 1 141 0 4 1616 458 299 0 63 chr6 135136649 135136824 -14380213 - RSINE1 SINE B4 0 165 2 4 1616 236 308 25 25 chr6 135136877 135136957 -14380080 + MT2B2 LTR ERVL 178 257 -327 4 1616 554 218 9 0 chr6 135136891 135137001 -14380036 + B1_Mus2 SINE Alu 36 146 -1 4 1616 233 279 160 65 chr6 135137210 135137379 -14379658 + RMER21A LTR ERV1 393 577 -370 4 1616 728 247 246 29 chr6 135137636 135137945 -14379092 - MTEa LTR MaLR 0 379 4 4 1616 215 111 28 0 chr6 135138078 135138114 -14378923 + PB1D7 SINE Alu 82 118 -2 4 1616 287 216 26 26 chr6 135138735 135138811 -14378226 - B4A SINE B4 -215 77 2 4 1616 396 0 107 0 chr6 135139002 135139086 -14377951 + (TG)n Simple_repeat Simple_repeat 1 93 0 4 1616 231 36 0 0 chr6 135139086 135139113 -14377924 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1616 1222 236 133 19 chr6 135139170 135139537 -14377500 + RLTR11A2 LTR ERVK 111 519 -8 4 1616 265 200 17 4 chr6 135139573 135139631 -14377406 + MTEa LTR MaLR 315 371 -8 4 1616 209 270 145 38 chr6 135139667 135139798 -14377239 + L3 LINE CR1 4343 4487 -2 4 1616 464 295 40 20 chr6 135140474 135140626 -14376411 - LTR48 LTR ERV1 -631 156 2 4 1616 231 247 191 11 chr6 135140694 135140788 -14376249 - PB1D9 SINE Alu 0 120 10 4 1616 388 200 0 28 chr6 135140792 135140864 -14376173 - ID2 SINE ID -13 70 1 4 1616 212 86 29 0 chr6 135140965 135141000 -14376037 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1616 249 245 19 19 chr6 135141000 135141054 -14375983 - PB1D9 SINE Alu -62 58 5 4 1616 1790 63 29 4 chr6 135141158 135141397 -14375640 + MTB LTR MaLR 156 400 0 4 1616 198 171 0 0 chr6 135141812 135141853 -14375184 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1616 837 171 48 31 chr6 135142395 135142590 -14374447 - B3 SINE B2 -2 193 1 4 1616 600 243 29 7 chr6 135142737 135142874 -14374163 - B1F1 SINE Alu -1 148 9 4 1616 241 308 7 136 chr6 135142744 135142898 -14374139 - MT2B2 LTR ERVL -298 286 153 4 1616 478 303 62 45 chr6 135142941 135143183 -14373854 + MLT1J2 LTR MaLR 194 439 -9 4 1616 649 277 36 52 chr6 135143664 135143912 -14373125 - RLTR11B LTR ERVK 0 453 210 4 1616 991 254 30 72 chr6 135144824 135144930 -14372107 - B4A SINE B4 0 292 208 4 1616 1553 211 146 0 chr6 135144930 135145294 -14371743 - MTD LTR MaLR -1 418 2 4 1616 991 254 30 72 chr6 135145294 135145492 -14371545 - B4A SINE B4 -85 207 2 4 1616 216 0 0 0 chr6 135145531 135145555 -14371482 + (CCAA)n Simple_repeat Simple_repeat 4 27 0 4 1616 319 265 37 47 chr6 135145570 135145677 -14371360 - PB1D10 SINE Alu -11 106 1 4 1616 242 194 169 65 chr6 135146062 135146139 -14370898 + B2_Mm2 SINE B2 1 85 -110 4 1616 1235 144 69 5 chr6 135146339 135146542 -14370495 - B3 SINE B2 0 216 1 4 1616 547 219 0 34 chr6 135146591 135146709 -14370328 + PB1D9 SINE Alu 1 114 -6 4 1616 194 318 43 54 chr6 135146766 135146859 -14370178 - MIRb SINE MIR -47 221 130 4 1616 434 294 8 92 chr6 135147171 135147302 -14369735 + ID_B1 SINE B4 82 201 -23 4 1616 258 179 0 0 chr6 135147306 135147362 -14369675 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 4 1616 387 0 0 0 chr6 135147364 135147407 -14369630 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1616 405 0 0 0 chr6 135147407 135147451 -14369586 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1616 535 95 27 0 chr6 135147451 135147525 -14369512 - B1_Mur1 SINE Alu -13 136 61 4 1616 354 158 0 0 chr6 135147591 135147648 -14369389 + ID_B1 SINE B4 122 178 -46 4 1616 264 309 81 0 chr6 135147701 135147824 -14369213 - MIRb SINE MIR -125 143 11 4 1616 190 375 0 50 chr6 135148558 135148659 -14368378 - MIRc SINE MIR -89 179 84 4 1616 207 0 0 0 chr6 135149154 135149177 -14367860 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1616 222 302 11 11 chr6 135149902 135149918 -14367119 - BC1_Mm scRNA scRNA -63 89 3 4 1616 259 268 14 0 chr6 135149918 135149989 -14367048 - ID SINE ID -150 74 3 4 1616 209 286 0 0 chr6 135150851 135150907 -14366130 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1616 484 317 65 18 chr6 135150913 135151083 -14365954 - B3A SINE B2 -20 178 1 4 1616 635 317 66 44 chr6 135151114 135151388 -14365649 + B4A SINE B4 1 280 -12 4 1616 293 200 24 42 chr6 135151395 135151562 -14365475 + (CATATA)n Simple_repeat Simple_repeat 2 165 0 4 1616 235 250 47 12 chr6 135151585 135151670 -14365367 + (CA)n Simple_repeat Simple_repeat 2 89 0 4 1616 432 0 0 0 chr6 135151686 135151734 -14365303 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1616 538 264 9 0 chr6 135152141 135152251 -14364786 - ID_B1 SINE B4 -24 200 90 4 1616 342 0 0 0 chr6 135152287 135152325 -14364712 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1616 566 253 89 18 chr6 135152831 135153000 -14364037 - B3A SINE B2 -16 182 2 4 1616 391 293 23 47 chr6 135153011 135153140 -14363897 - B1F SINE Alu -8 141 16 4 1616 231 229 146 0 chr6 135153147 135153243 -14363794 + MIR SINE MIR 35 144 -118 4 1616 352 233 121 11 chr6 135153447 135153538 -14363499 - PB1D10 SINE Alu 0 117 17 4 1616 240 222 127 0 chr6 135153790 135153853 -14363184 - ID2 SINE ID -7 76 6 4 1616 292 312 31 0 chr6 135154190 135154286 -14362751 + LTR41 LTR ERVL 1 99 -669 4 1616 411 229 8 119 chr6 135154291 135154425 -14362612 - PB1D9 SINE Alu 0 120 2 4 1616 351 253 84 0 chr6 135154433 135154528 -14362509 - B1F SINE Alu -7 142 40 4 1616 404 214 167 25 chr6 135154543 135154663 -14362374 - B1F1 SINE Alu 0 149 13 4 1616 349 362 39 55 chr6 135155081 135155262 -14361775 + MIR SINE MIR 45 222 -40 4 1616 379 256 188 25 chr6 135155940 135156180 -14360857 + L3 LINE CR1 3862 4140 -349 4 1616 260 252 152 49 chr6 135156210 135156395 -14360642 - MIR SINE MIR 0 268 61 4 1616 255 311 94 28 chr6 135156418 135156524 -14360513 - ID_B1 SINE B4 0 224 112 5 1616 212 225 133 53 chr6 135156459 135156534 -14360503 - PB1 SINE Alu -21 106 26 5 1616 21 0 0 0 chr6 135156689 135156710 -14360327 + AT_rich Low_complexity Low_complexity 1 21 0 5 1616 852 164 36 0 chr6 135156714 135156854 -14360183 + B1_Mus1 SINE Alu 2 146 -2 5 1616 245 217 0 0 chr6 135156859 135156905 -14360132 - B3 SINE B2 -8 208 163 5 1616 459 248 9 0 chr6 135157319 135157428 -14359609 + PB1D7 SINE Alu 2 111 -9 5 1616 409 247 0 0 chr6 135157552 135157633 -14359404 + RSINE1 SINE B4 3 83 -82 5 1616 1118 204 19 0 chr6 135157734 135157940 -14359097 - B3 SINE B2 -6 210 1 5 1616 542 233 87 82 chr6 135157954 135158160 -14358877 - ID_B1 SINE B4 -17 207 1 5 1616 2379 79 3 6 chr6 135158233 135158553 -14358484 - ORR1A2 LTR MaLR -8 319 1 5 1616 569 304 15 0 chr6 135158553 135158684 -14358353 - RSINE1 SINE B4 -29 136 4 5 1616 494 283 28 0 chr6 135158686 135158792 -14358245 - PB1D7 SINE Alu -11 109 1 5 1616 185 181 0 40 chr6 135159528 135159603 -14357434 + T-rich Low_complexity Low_complexity 1 72 0 5 1616 1216 61 0 0 chr6 135159603 135159750 -14357287 - B1_Mus2 SINE Alu 0 147 1 5 1616 720 211 42 7 chr6 135159754 135159897 -14357140 - B1_Mur1 SINE Alu 0 149 2 5 1616 265 299 146 23 chr6 135159902 135160032 -14357005 - B1F2 SINE Alu -3 146 1 5 1616 284 272 173 32 chr6 135160200 135160420 -14356617 - L1ME3B LINE L1 -96 6144 5894 5 1616 418 287 17 0 chr6 135160435 135160550 -14356487 - PB1D10 SINE Alu 0 117 1 5 1616 345 287 73 16 chr6 135160562 135160686 -14356351 - B1F SINE Alu 0 149 19 5 1616 501 283 51 62 chr6 135160581 135160758 -14356279 - ID_B1 SINE B4 -11 213 39 5 1616 289 317 111 24 chr6 135160808 135161105 -14355932 - L1ME3B LINE L1 -377 5863 5541 5 1616 633 266 93 27 chr6 135161375 135161676 -14355361 - L1MDa LINE L1 -6230 403 83 5 1616 243 0 0 0 chr6 135162176 135162203 -14354834 + (TC)n Simple_repeat Simple_repeat 1 27 0 5 1616 541 241 60 0 chr6 135162204 135162320 -14354717 + B1_Mur2 SINE Alu 18 140 -9 5 1616 365 0 22 0 chr6 135162345 135162390 -14354647 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 5 1616 959 144 6 0 chr6 135162391 135162558 -14354479 + (GA)n Simple_repeat Simple_repeat 1 168 0 5 1616 441 0 0 0 chr6 135162663 135162712 -14354325 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1616 247 185 18 18 chr6 135162716 135162771 -14354266 - B4 SINE B4 -11 281 227 5 1616 415 256 39 68 chr6 135162771 135163013 -14354024 - RLTR11A2 LTR ERVK 0 528 234 5 1616 1266 79 4 0 chr6 135163060 135163337 -14353700 + (TTC)n Simple_repeat Simple_repeat 1 277 0 5 1616 719 267 25 94 chr6 135163337 135163358 -14353679 - RLTR11A2 LTR ERVK -267 260 239 5 1616 1112 117 0 11 chr6 135163358 135163540 -14353497 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 1616 719 267 25 94 chr6 135163540 135163795 -14353242 - RLTR11A2 LTR ERVK -289 238 3 5 1616 663 238 159 10 chr6 135163795 135163997 -14353040 - B4 SINE B4 -57 235 3 5 1616 590 76 29 50 chr6 135164424 135164563 -14352474 + (CCAA)n Simple_repeat Simple_repeat 1 136 0 5 1616 263 231 61 15 chr6 135165090 135165156 -14351881 - ORR1E LTR MaLR -4 366 298 5 1616 759 252 0 25 chr6 135165158 135165321 -14351716 - ORR1E LTR MaLR -200 159 1 5 1616 504 340 50 8 chr6 135165321 135165561 -14351476 - MIR SINE MIR -4 258 9 5 1616 400 188 23 39 chr6 135165618 135165729 -14351308 - PB1D9 SINE Alu -206 108 2 5 1616 372 312 9 9 chr6 135165634 135165747 -14351290 - B4 SINE B4 -110 182 70 5 1616 406 258 38 153 chr6 135166308 135166491 -14350546 - RSINE1 SINE B4 0 165 4 5 1616 200 250 26 117 chr6 135166570 135166647 -14350390 - L2c LINE L2 -62 3325 3256 5 1616 351 136 0 0 chr6 135167549 135167608 -14349429 + (TATAA)n Simple_repeat Simple_repeat 5 63 0 5 1616 467 243 46 9 chr6 135167699 135167807 -14349230 - PB1D7 SINE Alu -8 112 1 5 1616 883 244 28 23 chr6 135167821 135167836 -14349201 + ID SINE ID 3 18 -206 5 1616 180 0 0 0 chr6 135167836 135167856 -14349181 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1616 883 244 28 23 chr6 135167856 135168058 -14348979 + ID_B1 SINE B4 19 221 -3 5 1616 1003 208 18 28 chr6 135168248 135168466 -14348571 + B3 SINE B2 1 216 0 5 1616 364 345 83 39 chr6 135168982 135169211 -14347826 + MIR SINE MIR 23 267 -1 5 1616 589 277 78 6 chr6 135169281 135169357 -14347680 + ID_B1 SINE B4 4 91 -133 5 1616 222 291 175 35 chr6 135169357 135169471 -14347566 + B1F1 SINE Alu 1 130 -19 5 1616 369 0 0 0 chr6 135169471 135169512 -14347525 + (CAA)n Simple_repeat Simple_repeat 1 41 0 5 1616 2108 191 95 9 chr6 135169735 135170189 -14346848 - RLTR16 LTR ERVK -12 493 1 5 1616 592 263 15 8 chr6 135170266 135170400 -14346637 + B1F SINE Alu 5 139 -10 5 1616 688 185 0 16 chr6 135170574 135170695 -14346342 - PB1D9 SINE Alu -1 119 1 5 1616 967 140 0 7 chr6 135170720 135170864 -14346173 + B1_Mur4 SINE Alu 1 143 -7 5 1616 696 94 0 20 chr6 135170949 135171047 -14345990 + RMER17C LTR ERVK 2 97 -313 5 1616 809 92 0 8 chr6 135171037 135171157 -14345880 + RMER17C LTR ERVK 289 407 -3 5 1616 907 213 0 0 chr6 135171157 135171312 -14345725 - B3 SINE B2 -29 187 33 5 1616 239 182 171 61 chr6 135171377 135171459 -14345578 - PB1D9 SINE Alu 0 120 30 5 1616 259 183 417 42 chr6 135171528 135171648 -14345389 - B2_Mm2 SINE B2 -28 167 3 5 1616 250 299 102 93 chr6 135171860 135171978 -14345059 - PB1D9 SINE Alu 0 120 2 5 1616 2317 77 17 72 chr6 135172988 135173336 -14343701 - ORR1A4 LTR MaLR 0 329 1 5 1616 333 0 0 0 chr6 135173647 135173684 -14343353 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1616 474 18 0 0 chr6 135173732 135173787 -14343250 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1616 389 242 98 25 chr6 135174133 135174300 -14342737 - MTEb LTR MaLR -22 357 184 5 1616 239 81 26 26 chr6 135174294 135174332 -14342705 - MTEb LTR MaLR -133 246 209 5 1616 384 200 37 12 chr6 135174326 135174407 -14342630 - MTEb LTR MaLR -133 246 164 5 1616 696 94 0 0 chr6 135174425 135174531 -14342506 + (TG)n Simple_repeat Simple_repeat 1 106 0 5 1616 224 287 110 25 chr6 135174560 135174678 -14342359 - B4A SINE B4 -164 128 1 5 1616 682 209 54 7 chr6 135174681 135174830 -14342207 - MTEb LTR MaLR -203 176 21 5 1616 22 0 0 0 chr6 135176162 135176184 -14340853 + AT_rich Low_complexity Low_complexity 1 22 0 5 1616 850 290 96 7 chr6 135176505 135176786 -14340251 + MER2 DNA MER2_type 38 343 -2 5 1616 192 320 112 25 chr6 135177297 135177377 -14339660 - MIRm SINE MIR -33 243 157 5 1616 746 151 69 35 chr6 135177840 135177984 -14339053 - B1_Mur4 SINE Alu -1 149 1 5 1616 568 304 95 28 chr6 135178042 135178326 -14338711 + MER2 DNA MER2_type 43 345 0 5 1616 206 267 105 13 chr6 135178930 135179006 -14338031 - MIRm SINE MIR -27 249 167 5 1616 28 29 0 0 chr6 135179120 135179155 -14337882 + AT_rich Low_complexity Low_complexity 1 35 0 5 1616 422 86 0 5 chr6 135179167 135179232 -14337805 - B2_Mm2 SINE B2 -107 109 47 5 1616 1306 85 22 6 chr6 135179263 135179441 -14337596 - B2_Mm2 SINE B2 -13 182 2 5 1616 204 265 40 20 chr6 135179537 135179587 -14337450 + MIR3 SINE MIR 118 168 -40 5 1616 517 236 19 108 chr6 135179654 135179811 -14337226 + RSINE1 SINE B4 2 144 -21 5 1616 788 204 0 20 chr6 135180202 135180352 -14336685 - B1_Mur2 SINE Alu 0 149 3 5 1616 193 172 17 33 chr6 135181138 135181198 -14335839 + CT-rich Low_complexity Low_complexity 1 59 0 5 1616 1105 67 5 32 chr6 135181199 135181384 -14335653 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 5 1616 481 250 62 0 chr6 135182364 135182492 -14334545 - B1F2 SINE Alu -13 136 1 5 1616 400 141 423 15 chr6 135182735 135182865 -14334172 + ID_B1 SINE B4 2 184 -40 5 1616 251 233 106 85 chr6 135182794 135182888 -14334149 + B1_Mm SINE Alu 24 119 -28 5 1616 315 100 100 0 chr6 135184341 135184391 -14332646 - HAL1-3A_ME LINE L1 -828 2030 1976 5 1616 21 36 0 0 chr6 135186545 135186573 -14330464 + AT_rich Low_complexity Low_complexity 1 28 0 5 1616 318 279 46 11 chr6 135186589 135186676 -14330361 - RSINE1 SINE B4 -72 93 4 5 1616 780 194 124 0 chr6 135186702 135186888 -14330149 - B3 SINE B2 -6 210 2 5 1616 349 177 31 19 chr6 135187243 135187340 -14329697 + B1_Mus1 SINE Alu 3 104 -43 5 1616 358 272 26 109 chr6 135188669 135188838 -14328199 - B4A SINE B4 -123 169 22 5 1616 857 148 22 0 chr6 135188816 135188951 -14328086 + B1_Mur3 SINE Alu 11 148 -1 5 1616 269 109 22 0 chr6 135188960 135189006 -14328031 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 5 1616 522 196 47 0 chr6 135189332 135189439 -14327598 + ID_B1 SINE B4 92 203 -21 5 1616 724 311 45 45 chr6 135190677 135190967 -14326070 - B4A SINE B4 -2 290 1 5 1616 236 343 84 35 chr6 135191061 135191203 -14325834 + PB1D10 SINE Alu 1 149 0 5 1616 666 0 0 0 chr6 135191560 135191634 -14325403 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 1616 247 178 160 27 chr6 135191781 135191856 -14325181 + PB1D7 SINE Alu 36 120 0 5 1616 198 0 0 0 chr6 135192882 135192904 -14324133 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1616 200 179 31 31 chr6 135192962 135193060 -14323977 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 5 1616 324 291 42 13 chr6 135193130 135193268 -14323769 - B1F SINE Alu 0 149 12 5 1616 477 269 67 0 chr6 135193728 135193862 -14323175 + B1F SINE Alu 1 143 -6 5 1616 626 216 57 32 chr6 135193878 135194036 -14323001 + RSINE1 SINE B4 4 165 0 5 1616 204 125 0 0 chr6 135195135 135195167 -14321870 + (CATA)n Simple_repeat Simple_repeat 1 32 0 5 1616 273 267 89 0 chr6 135195168 135195269 -14321768 - L1MA4 LINE L1 -374 5926 5817 5 1616 818 226 144 5 chr6 135195382 135195569 -14321468 + ID_B1 SINE B4 11 223 -1 5 1616 229 247 81 69 chr6 135195732 135195819 -14321218 - AmnSINE1 SINE SINE -470 105 18 5 1616 216 0 0 0 chr6 135196466 135196490 -14320547 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 1616 351 0 0 0 chr6 135196491 135196530 -14320507 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1616 592 312 38 19 chr6 135196540 135196805 -14320232 - Lx8 LINE L1 -1569 5904 5635 6 1616 418 294 82 58 chr6 135197230 135197405 -14319632 - ID_B1 SINE B4 -42 250 67 6 1616 755 98 71 39 chr6 135198764 135198891 -14318146 - B1_Mus1 SINE Alu -12 136 6 6 1616 224 222 98 122 chr6 135199016 135199098 -14317939 - RSINE1 SINE B4 0 165 86 6 1616 377 19 0 0 chr6 135199624 135199676 -14317361 - L1_Mus1 LINE L1 0 6567 6516 6 1616 485 250 0 0 chr6 135199678 135199774 -14317263 - RSINE1 SINE B4 -68 97 2 6 1616 445 271 46 40 chr6 135200538 135200711 -14316326 + Arthur1A DNA Tip100 1 174 -3 6 1616 198 0 0 0 chr6 135200804 135200826 -14316211 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1616 414 0 0 0 chr6 135204020 135204066 -14312971 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1616 269 275 14 0 chr6 135204831 135204900 -14312137 - MER33 DNA MER1_type -245 79 10 6 1616 460 185 8 92 chr6 135205001 135205120 -14311917 - PB1D10 SINE Alu -1 116 8 6 1616 674 228 27 27 chr6 135205127 135205276 -14311761 - B1F SINE Alu 0 149 1 6 1616 282 299 0 13 chr6 135205559 135205637 -14311400 + CT-rich Low_complexity Low_complexity 3 79 0 6 1616 2004 111 68 52 chr6 135205637 135205961 -14311076 - ORR1A4 LTR MaLR 0 329 1 6 1616 9127 158 68 83 chr6 135205961 135207954 -14309083 - ORR1A4-int LTR MaLR 0 1963 1 6 1616 2164 102 0 67 chr6 135207954 135208299 -14308738 - ORR1A4 LTR MaLR 0 329 8 6 1616 236 250 0 0 chr6 135208300 135208352 -14308685 + CT-rich Low_complexity Low_complexity 1 52 0 6 1616 418 160 46 37 chr6 135208352 135208461 -14308576 - PB1D10 SINE Alu -1 116 10 6 1616 3330 43 5 5 chr6 135208647 135209043 -14307994 + MTA_Mm LTR MaLR 1 396 0 6 1616 428 161 0 0 chr6 135209129 135209183 -14307854 - B1_Mur1 SINE Alu -10 139 86 6 1616 461 275 120 15 chr6 135209183 135209316 -14307721 + B1F2 SINE Alu 3 149 0 6 1616 254 138 17 0 chr6 135209324 135209382 -14307655 + (CAAA)n Simple_repeat Simple_repeat 1 59 0 6 1616 249 237 51 0 chr6 135209422 135209481 -14307556 + B4A SINE B4 78 139 -153 6 1616 289 228 0 0 chr6 135209432 135209489 -14307548 + B1_Mur4 SINE Alu 7 63 -87 6 1616 521 306 60 30 chr6 135209509 135209775 -14307262 + L1MC4a LINE L1 5437 5710 -2172 6 1616 1411 40 0 6 chr6 135210077 135210251 -14306786 - B2_Mm2 SINE B2 -21 174 2 6 1616 300 343 20 10 chr6 135210251 135210451 -14306586 + L1MC4a LINE L1 6123 6324 -1558 6 1616 344 216 72 0 chr6 135210659 135210756 -14306281 + B3 SINE B2 113 216 0 6 1616 230 316 33 66 chr6 135210685 135210807 -14306230 + LTR88c LTR Genie? 254 371 -491 6 1616 790 186 0 27 chr6 135210917 135211066 -14305971 + B1_Mus1 SINE Alu 2 146 -2 6 1616 593 221 20 52 chr6 135211588 135211741 -14305296 + B1_Mur1 SINE Alu 1 148 -1 6 1616 354 320 95 69 chr6 135211776 135212081 -14304956 + MLT1D LTR MaLR 1 313 -192 6 1616 420 296 91 0 chr6 135212103 135212235 -14304802 + MLT1D LTR MaLR 362 505 0 6 1616 210 179 17 35 chr6 135212351 135212365 -14304672 + A-rich Low_complexity Low_complexity 2 15 0 6 1616 815 266 13 53 chr6 135212365 135212591 -14304446 + ID_B1 SINE B4 1 217 -7 6 1616 210 179 17 35 chr6 135212591 135212634 -14304403 + A-rich Low_complexity Low_complexity 16 58 0 6 1616 222 264 10 99 chr6 135212771 135212872 -14304165 - PB1D10 SINE Alu -1 116 25 6 1616 267 320 60 30 chr6 135213740 135213840 -14303197 + MIRc SINE MIR 101 203 -65 6 1616 634 238 68 117 chr6 135214292 135214497 -14302540 - B3 SINE B2 -14 202 8 6 1616 4144 57 2 4 chr6 135214811 135215323 -14301714 - L1_Mus2 LINE L1 0 6566 6056 6 1616 1270 38 0 0 chr6 135215323 135215483 -14301554 + L1_Mus2 LINE L1 5891 6050 -516 6 1616 289 363 41 7 chr6 135215681 135215828 -14301209 + MIRc SINE MIR 116 267 -1 6 1616 325 308 63 111 chr6 135216292 135216482 -14300555 + ORR1D2 LTR MaLR 13 193 -177 6 1616 815 277 11 0 chr6 135216489 135216677 -14300360 - ID_B1 SINE B4 -34 190 1 6 1616 272 306 104 18 chr6 135216679 135216842 -14300195 + ORR1D2 LTR MaLR 178 354 -5 6 1616 254 224 0 0 chr6 135217377 135217426 -14299611 - B1F1 SINE Alu -99 50 2 6 1616 192 40 0 0 chr6 135217463 135217488 -14299549 + (CCA)n Simple_repeat Simple_repeat 2 26 0 6 1616 217 119 0 45 chr6 135217608 135217652 -14299385 + (TCTCTG)n Simple_repeat Simple_repeat 3 44 0 6 1616 784 298 48 0 chr6 135217664 135217872 -14299165 - ID_B1 SINE B4 -6 218 1 6 1616 1115 0 15 0 chr6 135217872 135218002 -14299035 + (TTCTC)n Simple_repeat Simple_repeat 5 136 0 6 1616 1271 34 0 38 chr6 135218004 135218189 -14298848 + (TCCCC)n Simple_repeat Simple_repeat 3 180 0 6 1616 726 96 0 0 chr6 135218201 135218305 -14298732 + (TTTC)n Simple_repeat Simple_repeat 4 107 0 6 1616 213 39 0 0 chr6 135218708 135218734 -14298303 + (CAGG)n Simple_repeat Simple_repeat 2 27 0 6 1616 180 306 0 46 chr6 135218951 135219016 -14298021 - L2 LINE L2 -2631 788 727 6 1616 263 203 0 15 chr6 135219177 135219242 -14297795 + CT-rich Low_complexity Low_complexity 1 64 0 6 1616 333 68 0 0 chr6 135219284 135219328 -14297709 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 6 1616 837 154 0 15 chr6 135219344 135219476 -14297561 - B3 SINE B2 -86 130 1 6 1616 637 226 29 29 chr6 135219492 135219629 -14297408 - ID_B1 SINE B4 -8 216 80 6 1616 382 330 18 0 chr6 135219642 135219754 -14297283 - PB1D10 SINE Alu 0 117 4 6 1616 694 304 119 0 chr6 135220237 135220258 -14296779 + B4 SINE B4 1 21 -271 6 1616 297 0 0 0 chr6 135220258 135220291 -14296746 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1616 694 304 119 0 chr6 135220291 135220512 -14296525 + B4 SINE B4 22 271 -21 6 1616 230 0 33 0 chr6 135220610 135220640 -14296397 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1616 226 336 40 67 chr6 135221866 135222016 -14295021 + MLT1-int LTR MaLR 1041 1186 -185 6 1616 600 295 105 83 chr6 135222635 135222901 -14294136 + B4A SINE B4 10 281 -11 6 1616 459 63 0 0 chr6 135222944 135223007 -14294030 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1616 276 143 0 0 chr6 135223007 135223063 -14293974 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 1616 26 30 0 0 chr6 135223097 135223130 -14293907 + AT_rich Low_complexity Low_complexity 1 33 0 6 1616 540 335 12 0 chr6 135223236 135223397 -14293640 - LTR40b LTR ERVL -222 240 78 6 1616 286 292 0 14 chr6 135224223 135224296 -14292741 - MLT1A0 LTR MaLR -283 82 11 6 1616 319 281 92 23 chr6 135224571 135224702 -14292335 + MIRb SINE MIR 42 181 -87 6 1616 1396 216 10 65 chr6 135224746 135225129 -14291908 - RMER1B Other Other -385 681 262 6 1616 198 0 0 0 chr6 135225224 135225246 -14291791 + (GA)n Simple_repeat Simple_repeat 2 23 0 6 1616 921 212 69 25 chr6 135225929 135226132 -14290905 + B3 SINE B2 5 216 0 6 1616 1084 128 0 0 chr6 135226138 135226278 -14290759 + B1_Mur4 SINE Alu 1 140 -10 6 1616 255 31 0 0 chr6 135226278 135226310 -14290727 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1616 231 36 0 0 chr6 135226329 135226357 -14290680 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1616 411 277 11 0 chr6 135227656 135227750 -14289287 - RSINE1 SINE B4 -41 124 30 6 1616 1873 261 68 56 chr6 135227922 135228323 -14288714 - L1MC1 LINE L1 -260 6073 5671 6 1616 874 153 229 27 chr6 135228323 135228511 -14288526 - URR1A DNA MER1_type 0 226 1 6 1616 1873 261 68 56 chr6 135228511 135228820 -14288217 - L1MC1 LINE L1 -663 5670 5355 6 1616 650 159 80 0 chr6 135228876 135228989 -14288048 - ID_B1 SINE B4 -3 221 100 6 1616 504 176 126 30 chr6 135228989 135229005 -14288032 - B1F1 SINE Alu -1 115 1 6 1616 487 213 18 9 chr6 135229009 135229118 -14287919 - L1MC1 LINE L1 -841 5305 5196 6 1616 289 308 47 80 chr6 135229168 135229379 -14287658 + L2c LINE L2 3171 3425 -1 6 1616 185 94 0 30 chr6 135230422 135230455 -14286582 + (TCC)n Simple_repeat Simple_repeat 2 33 0 6 1616 530 213 111 32 chr6 135230456 135230582 -14286455 - B1_Mur1 SINE Alu -5 144 9 6 1616 514 236 0 106 chr6 135230594 135230736 -14286301 - B1F SINE Alu -5 144 18 6 1616 195 222 0 0 chr6 135231094 135231139 -14285898 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1616 400 278 107 36 chr6 135231279 135231391 -14285646 - B4A SINE B4 -28 196 80 6 1616 38735 43 0 3 chr6 135231400 135237821 -14279216 - L1Md_T LINE L1 0 6585 83 6 1616 333 211 132 19 chr6 135237823 135237929 -14279108 - B4A SINE B4 -169 123 6 6 1616 195 42 0 0 chr6 135238119 135238143 -14278894 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1616 621 284 8 0 chr6 135238148 135238282 -14278755 - RSINE1 SINE B4 -29 136 2 6 1616 23 54 0 0 chr6 135238395 135238432 -14278605 + AT_rich Low_complexity Low_complexity 1 37 0 6 1616 1099 177 29 19 chr6 135238646 135238853 -14278184 - B3 SINE B2 -7 209 1 6 1616 555 261 22 0 chr6 135238902 135239036 -14278001 - ID_B1 SINE B4 -4 220 84 6 1616 521 270 98 78 chr6 135239461 135239654 -14277383 + ID_B1 SINE B4 15 211 -13 6 1616 1873 177 16 37 chr6 135239680 135240061 -14276976 + ORR1D1 LTR MaLR 1 373 -1 6 1616 979 134 0 13 chr6 135240562 135240713 -14276324 - B1_Mur4 SINE Alu -1 149 1 6 1616 630 273 15 0 chr6 135241046 135241178 -14275859 + ID_B1 SINE B4 84 217 -7 6 1616 496 303 76 0 chr6 135241187 135241319 -14275718 + B1_Mur1 SINE Alu 3 144 -5 6 1616 507 196 48 19 chr6 135241359 135241463 -14275574 + PB1D7 SINE Alu 3 109 -11 6 1616 485 287 80 7 chr6 135241496 135241693 -14275344 + B4A SINE B4 8 224 -68 6 1616 537 115 0 0 chr6 135241894 135241990 -14275047 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1616 261 0 0 0 chr6 135242034 135242063 -14274974 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1616 565 265 76 0 chr6 135242071 135242203 -14274834 - RSINE1 SINE B4 -20 145 4 6 1616 664 197 14 21 chr6 135243762 135243902 -14273135 + B1F SINE Alu 5 143 -6 6 1616 24 0 0 0 chr6 135243968 135243992 -14273045 + AT_rich Low_complexity Low_complexity 1 24 0 7 1616 191 170 21 0 chr6 135244079 135244126 -14272911 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1616 776 190 42 0 chr6 135244165 135244307 -14272730 - B1F2 SINE Alu -1 148 1 7 1616 324 228 0 75 chr6 135244693 135244854 -14272183 + C-rich Low_complexity Low_complexity 5 153 0 7 1616 410 186 22 44 chr6 135246797 135246887 -14270150 - PB1D10 SINE Alu -11 106 19 7 1616 40 37 0 0 chr6 135246966 135247020 -14270017 + AT_rich Low_complexity Low_complexity 1 54 0 7 1616 1380 71 38 6 chr6 135247038 135247221 -14269816 + B2_Mm2 SINE B2 2 190 -5 7 1616 643 231 14 36 chr6 135247494 135247633 -14269404 - B1_Mur1 SINE Alu -12 137 2 7 1616 345 257 32 114 chr6 135247525 135247648 -14269389 - MT2B LTR ERVL -336 265 153 7 1616 584 314 109 45 chr6 135248298 135248545 -14268492 - MLT1J LTR MaLR -15 497 235 7 1616 510 17 0 0 chr6 135249471 135249530 -14267507 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 1616 906 185 0 0 chr6 135249532 135249678 -14267359 - B1_Mus2 SINE Alu 0 147 2 7 1616 431 165 12 0 chr6 135249831 135249916 -14267121 + CT-rich Low_complexity Low_complexity 4 89 0 7 1616 536 225 33 80 chr6 135249920 135250070 -14266967 - B1F2 SINE Alu -6 143 1 7 1616 294 197 16 0 chr6 135250341 135250402 -14266635 + B1_Mur1 SINE Alu 75 136 -13 7 1616 761 96 28 240 chr6 135250795 135250974 -14266063 + B1_Mm SINE Alu 2 142 -5 7 1616 408 67 0 0 chr6 135250977 135251037 -14266000 + (GAA)n Simple_repeat Simple_repeat 3 62 0 7 1616 1311 74 0 0 chr6 135251038 135251214 -14265823 + (GGAGAA)n Simple_repeat Simple_repeat 4 179 0 7 1616 397 237 61 10 chr6 135251949 135252047 -14264990 + ID_B1 SINE B4 110 212 -12 7 1616 553 308 119 4 chr6 135252085 135252346 -14264691 + B4A SINE B4 2 292 0 7 1616 250 319 0 0 chr6 135252429 135252498 -14264539 + ID4_ SINE ID 1 69 -14 7 1616 193 274 64 64 chr6 135252989 135253067 -14263970 + MIRb SINE MIR 168 245 -23 7 1616 642 95 0 0 chr6 135253583 135253678 -14263359 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 7 1616 880 314 18 95 chr6 135253705 135254043 -14262994 - MTEa LTR MaLR -9 370 59 7 1616 624 261 75 156 chr6 135254133 135254441 -14262596 - B4 SINE B4 0 292 10 7 1616 1384 219 87 70 chr6 135255463 135255545 -14261492 - RLTR16 LTR ERVK 0 505 415 7 1616 507 17 0 0 chr6 135255545 135255605 -14261432 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 1616 1384 219 87 70 chr6 135255605 135256019 -14261018 - RLTR16 LTR ERVK -91 414 1 7 1616 845 254 234 42 chr6 135256026 135256359 -14260678 + MTD LTR MaLR 23 419 0 7 1616 411 137 0 0 chr6 135256388 135256461 -14260576 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1616 665 109 0 10 chr6 135256600 135256702 -14260335 - ORR1B2 LTR MaLR -266 101 1 7 1616 263 275 93 121 chr6 135256761 135256976 -14260061 + MIRb SINE MIR 40 248 -20 7 1616 236 259 0 17 chr6 135256994 135257053 -14259984 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1616 290 262 11 45 chr6 135257061 135257149 -14259888 - B4A SINE B4 0 292 208 7 1616 222 235 75 20 chr6 135257686 135257784 -14259253 + MIRc SINE MIR 38 143 -125 7 1616 433 295 19 63 chr6 135257805 135257964 -14259073 - MLT1F LTR MaLR -5 564 413 7 1616 720 314 89 6 chr6 135257993 135258320 -14258717 + L1MB8 LINE L1 3873 4226 -1920 7 1616 564 56 0 0 chr6 135258321 135258393 -14258644 + (CATA)n Simple_repeat Simple_repeat 3 74 0 7 1616 465 190 88 72 chr6 135258429 135258529 -14258508 + B1F SINE Alu 23 133 -16 7 1616 2059 128 18 59 chr6 135258529 135258869 -14258168 - ORR1A3 LTR MaLR 0 326 1 7 1616 465 190 88 72 chr6 135258869 135258893 -14258144 + B1F SINE Alu 134 149 0 7 1616 446 268 0 30 chr6 135258904 135258918 -14258119 + ID SINE ID 74 84 -140 7 1616 428 264 56 9 chr6 135258918 135259025 -14258012 + PB1D10 SINE Alu 4 115 -2 7 1616 1033 279 116 51 chr6 135260524 135261190 -14255847 + L1MB8 LINE L1 4401 5109 -1037 7 1616 277 321 112 21 chr6 135261191 135261334 -14255703 + RSINE1 SINE B4 9 164 -1 7 1616 243 209 45 0 chr6 135261423 135261490 -14255547 + L1MC LINE L1 5092 5161 -985 7 1616 716 266 7 0 chr6 135261543 135261686 -14255351 + RSINE1 SINE B4 3 146 -19 7 1616 1356 262 113 16 chr6 135261738 135262385 -14254652 + L1MB8 LINE L1 5190 5904 -274 7 1616 439 267 57 36 chr6 135262389 135262529 -14254508 + RSINE1 SINE B4 3 145 -20 7 1616 419 242 211 45 chr6 135262636 135262835 -14254202 + L1MB8 LINE L1 5942 6173 -5 7 1616 755 255 71 20 chr6 135262939 135263191 -14253846 - MLT1F LTR MaLR -282 266 2 7 1616 705 61 0 0 chr6 135263516 135263615 -14253422 + (TC)n Simple_repeat Simple_repeat 2 100 0 7 1616 432 289 0 0 chr6 135263791 135263881 -14253156 - RSINE1 SINE B4 -74 91 2 7 1616 189 231 59 82 chr6 135263950 135264035 -14253002 - L2 LINE L2 -3262 157 75 7 1616 342 373 11 2 chr6 135264567 135264795 -14252242 + Lx9 LINE L1 7100 7347 -297 7 1616 567 0 0 0 chr6 135264817 135264880 -14252157 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1616 348 229 0 0 chr6 135265414 135265484 -14251553 + BC1_Mm scRNA scRNA 1 70 -82 7 1616 236 143 24 94 chr6 135265489 135265563 -14251474 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 7 1616 1013 79 37 0 chr6 135265563 135265727 -14251310 + (CCCCCT)n Simple_repeat Simple_repeat 2 171 0 7 1616 236 143 24 94 chr6 135265727 135265737 -14251300 + (TCTCTG)n Simple_repeat Simple_repeat 6 15 0 7 1617 207 0 0 0 chr6 135266555 135266578 -14250459 + (TA)n Simple_repeat Simple_repeat 2 24 0 7 1617 241 26 53 0 chr6 135266580 135266618 -14250419 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1617 524 290 129 70 chr6 135266623 135266894 -14250143 - B4A SINE B4 0 292 6 7 1617 202 188 0 0 chr6 135267276 135267308 -14249729 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 1617 444 67 0 0 chr6 135267308 135267368 -14249669 + (TGG)n Simple_repeat Simple_repeat 3 62 0 7 1617 189 0 0 0 chr6 135267469 135267490 -14249547 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 7 1617 988 131 15 0 chr6 135267490 135267627 -14249410 - B1_Mur3 SINE Alu -9 140 2 7 1617 814 254 32 16 chr6 135268018 135268234 -14248803 + B3A SINE B2 6 214 -2 7 1617 477 319 7 7 chr6 135268573 135268712 -14248325 + B1F SINE Alu 1 139 -10 7 1617 597 291 142 5 chr6 135268768 135268965 -14248072 + B4A SINE B4 1 224 -68 7 1617 876 302 29 25 chr6 135268975 135269250 -14247787 + B4A SINE B4 9 284 -8 7 1617 311 211 19 6 chr6 135269260 135269422 -14247615 + (CA)n Simple_repeat Simple_repeat 2 165 0 7 1617 201 154 0 0 chr6 135269442 135269481 -14247556 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1617 261 0 0 0 chr6 135270182 135270211 -14246826 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1617 548 315 20 14 chr6 135270212 135270360 -14246677 - RSINE1 SINE B4 -15 150 2 7 1617 322 379 8 0 chr6 135271089 135271221 -14245816 + ID_B1 SINE B4 79 211 -13 7 1617 21 36 0 0 chr6 135271271 135271299 -14245738 + AT_rich Low_complexity Low_complexity 1 28 0 7 1617 186 103 0 0 chr6 135271381 135271410 -14245627 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1617 180 0 0 0 chr6 135272239 135272259 -14244778 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1617 276 282 177 3 chr6 135272264 135272360 -14244677 - PB1D7 SINE Alu -16 133 2 7 1617 28 0 0 0 chr6 135274031 135274059 -14242978 + AT_rich Low_complexity Low_complexity 1 28 0 7 1617 504 0 0 0 chr6 135274178 135274234 -14242803 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1617 190 257 59 76 chr6 135274391 135274509 -14242528 + MIR3 SINE MIR 93 208 0 7 1617 183 254 0 0 chr6 135274749 135274812 -14242225 + (CTAA)n Simple_repeat Simple_repeat 1 63 0 7 1617 21 0 0 0 chr6 135275624 135275645 -14241392 + AT_rich Low_complexity Low_complexity 1 21 0 7 1617 714 255 51 47 chr6 135275648 135275862 -14241175 - B3 SINE B2 -1 215 1 7 1617 613 210 25 0 chr6 135276351 135276470 -14240567 - B1F1 SINE Alu -6 143 22 7 1617 335 286 44 9 chr6 135276500 135276613 -14240424 - PB1D10 SINE Alu 0 117 1 7 1617 239 0 0 31 chr6 135277351 135277383 -14239654 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1617 3363 138 33 2 chr6 135278495 135278805 -14238232 - L1_Mm LINE L1 -930 4953 4641 7 1617 183 42 0 0 chr6 135278805 135278829 -14238208 + (TTG)n Simple_repeat Simple_repeat 2 25 0 7 1617 3363 138 33 2 chr6 135278829 135279062 -14237975 - L1_Mm LINE L1 -1243 4640 4394 7 1617 9291 136 7 10 chr6 135279052 135281098 -14235939 + Lx2 LINE L1 4956 6997 0 7 1617 341 225 14 0 chr6 135281147 135281218 -14235819 + ID_B1 SINE B4 99 170 -54 7 1617 515 271 19 39 chr6 135281487 135281664 -14235373 - B3A SINE B2 -3 192 37 7 1617 488 279 54 0 chr6 135281664 135281793 -14235244 - B1F2 SINE Alu -13 136 1 7 1617 180 0 0 0 chr6 135281818 135281838 -14235199 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 7 1617 501 62 0 0 chr6 135281839 135281904 -14235133 + (TTA)n Simple_repeat Simple_repeat 2 66 0 7 1617 349 145 13 13 chr6 135282879 135282956 -14234081 + CT-rich Low_complexity Low_complexity 2 78 0 7 1617 273 281 67 10 chr6 135283429 135283533 -14233504 + MER5A1 DNA MER1_type 7 116 -50 7 1617 219 103 0 0 chr6 135284969 135285008 -14232029 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1617 292 330 20 10 chr6 135285011 135285112 -14231925 - RSINE1 SINE B4 -62 103 2 7 1617 582 258 8 0 chr6 135285119 135285239 -14231798 - B1_Mur1 SINE Alu -27 122 2 7 1617 934 213 67 34 chr6 135285472 135285681 -14231356 + B3 SINE B2 1 216 0 7 1617 276 273 73 71 chr6 135286878 135287059 -14229978 - MIRb SINE MIR -46 222 42 7 1617 273 57 0 0 chr6 135287816 135287851 -14229186 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 7 1617 250 330 93 62 chr6 135289015 135289209 -14227828 - ORR1E LTR MaLR -87 272 73 7 1617 684 309 88 9 chr6 135289376 135289592 -14227445 + B4 SINE B4 3 235 -57 7 1617 566 208 35 115 chr6 135290013 135290047 -14226990 + B4 SINE B4 64 83 -209 8 1617 830 148 35 0 chr6 135290047 135290189 -14226848 + B1_Mur1 SINE Alu 2 148 -1 8 1617 240 281 0 17 chr6 135290263 135290321 -14226716 - MIR3 SINE MIR -43 165 109 8 1617 442 250 27 95 chr6 135291884 135292069 -14224968 + B4A SINE B4 5 172 -120 8 1617 304 221 24 83 chr6 135292090 135292158 -14224879 + RSINE1 SINE B4 87 150 -15 8 1617 258 32 0 0 chr6 135292158 135292189 -14224848 + (TC)n Simple_repeat Simple_repeat 1 31 0 8 1617 304 221 24 83 chr6 135292189 135292204 -14224833 + RSINE1 SINE B4 151 165 0 8 1617 552 292 23 0 chr6 135292306 135292436 -14224601 - MER2 DNA MER2_type 0 345 213 8 1617 755 178 0 36 chr6 135292473 135292613 -14224424 - B1_Mur2 SINE Alu -2 147 13 8 1617 265 82 41 0 chr6 135292623 135292672 -14224365 + (TCC)n Simple_repeat Simple_repeat 2 52 0 8 1617 25 0 0 0 chr6 135292672 135292697 -14224340 + AT_rich Low_complexity Low_complexity 1 25 0 8 1617 358 315 0 11 chr6 135292706 135292796 -14224241 - PB1D10 SINE Alu -21 96 8 8 1617 251 384 0 20 chr6 135292707 135292808 -14224229 - ID_B1 SINE B4 -48 176 78 8 1617 751 285 36 10 chr6 135292834 135293029 -14224008 - B3 SINE B2 -3 213 14 8 1617 505 298 123 18 chr6 135293029 135293248 -14223789 - MER2 DNA MER2_type -102 243 2 8 1617 580 273 23 0 chr6 135293334 135293466 -14223571 - RSINE1 SINE B4 -20 145 11 8 1617 190 316 122 31 chr6 135293915 135294013 -14223024 + MIRm SINE MIR 27 133 -143 8 1617 277 385 57 70 chr6 135295061 135295290 -14221747 - MIRb SINE MIR -16 252 27 8 1617 404 239 69 60 chr6 135296006 135296122 -14220915 + B1F SINE Alu 31 147 -2 8 1617 214 266 178 39 chr6 135296340 135296469 -14220568 - MIRb SINE MIR -99 169 20 8 1617 1252 247 32 0 chr6 135296647 135296926 -14220111 + B4A SINE B4 3 290 -2 8 1617 366 61 0 0 chr6 135296959 135297008 -14220029 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1617 664 232 42 7 chr6 135297155 135297298 -14219739 - B1_Mur1 SINE Alu 0 149 2 8 1617 809 149 21 21 chr6 135297313 135297327 -14219710 - B1_Mur2 SINE Alu 0 149 136 8 1617 456 67 0 0 chr6 135297327 135297387 -14219650 + (TTTA)n Simple_repeat Simple_repeat 4 63 0 8 1617 809 149 21 21 chr6 135297387 135297516 -14219521 - B1_Mur2 SINE Alu -14 135 6 8 1617 294 255 0 134 chr6 135297418 135297545 -14219492 - MT2B LTR ERVL -344 257 148 8 1617 181 182 0 83 chr6 135297815 135297863 -14219174 - L2a LINE L2 -258 3168 3125 8 1617 347 209 83 42 chr6 135297951 135298071 -14218966 - MIR SINE MIR -40 222 98 8 1617 648 59 0 0 chr6 135298994 135299079 -14217958 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 8 1617 25 31 0 0 chr6 135299088 135299120 -14217917 + AT_rich Low_complexity Low_complexity 1 32 0 8 1617 293 276 25 33 chr6 135299972 135300092 -14216945 - L2a LINE L2 -1 3425 3307 8 1617 477 0 0 0 chr6 135300656 135300709 -14216328 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1617 261 0 0 0 chr6 135300709 135300737 -14216300 + (GA)n Simple_repeat Simple_repeat 2 30 0 8 1617 730 245 93 26 chr6 135300833 135301101 -14215936 + B4A SINE B4 1 286 -6 8 1617 693 246 8 0 chr6 135301204 135301338 -14215699 + B1F SINE Alu 13 147 -2 8 1617 281 248 96 10 chr6 135301465 135301657 -14215380 - Lx9 LINE L1 -6 7638 7405 8 1617 506 333 60 0 chr6 135302609 135302759 -14214278 - ID_B1 SINE B4 -62 162 4 8 1617 324 0 0 0 chr6 135302992 135303028 -14214009 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1617 265 306 14 27 chr6 135303028 135303102 -14213935 - ID4 SINE ID -10 73 1 8 1617 880 270 9 14 chr6 135303146 135303360 -14213677 - B3 SINE B2 -3 213 1 8 1617 2266 319 87 31 chr6 135303484 135304627 -14212410 + Lx8 LINE L1 5604 6810 -663 8 1617 592 228 46 30 chr6 135304661 135304792 -14212245 + Lx8 LINE L1 7015 7147 -326 8 1617 470 266 19 25 chr6 135304799 135304957 -14212080 + Lx8 LINE L1 7310 7466 -7 8 1617 853 191 91 21 chr6 135305059 135305246 -14211791 + ORR1D2 LTR MaLR 1 200 -170 8 1617 801 266 43 63 chr6 135305246 135305595 -14211442 - L1MA7 LINE L1 -234 6057 5716 8 1617 610 186 77 46 chr6 135305880 135306010 -14211027 + B3A SINE B2 1 134 -64 8 1617 459 0 0 0 chr6 135306030 135306081 -14210956 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1617 333 145 0 0 chr6 135306360 135306422 -14210615 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1617 180 0 0 0 chr6 135306422 135306442 -14210595 + (GA)n Simple_repeat Simple_repeat 1 20 0 8 1617 195 184 0 0 chr6 135306528 135306566 -14210471 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1617 1502 230 61 25 chr6 135306848 135307241 -14209796 - RCHARR1 DNA MER1_type -5 969 563 8 1617 855 244 59 10 chr6 135307282 135307485 -14209552 + B3 SINE B2 1 213 -3 8 1617 234 0 0 0 chr6 135309068 135309094 -14207943 + (TGG)n Simple_repeat Simple_repeat 3 28 0 8 1617 486 0 0 0 chr6 135309454 135309508 -14207529 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1617 489 34 0 0 chr6 135309508 135309566 -14207471 + (GA)n Simple_repeat Simple_repeat 1 59 0 8 1617 690 249 109 16 chr6 135309673 135309865 -14207172 - ID_B1 SINE B4 -10 214 5 8 1617 24 0 0 0 chr6 135309872 135309896 -14207141 + AT_rich Low_complexity Low_complexity 1 24 0 8 1617 393 158 171 0 chr6 135309896 135309978 -14207059 - B1_Mur3 SINE Alu -21 128 33 8 1617 306 164 0 35 chr6 135310187 135310244 -14206793 - HAL1-3A_ME LINE L1 -829 2029 1975 8 1617 212 0 0 35 chr6 135310795 135310824 -14206213 + (TTA)n Simple_repeat Simple_repeat 1 28 0 8 1617 252 0 0 0 chr6 135310957 135310985 -14206052 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1617 926 56 45 10 chr6 135311446 135311736 -14205301 + (TCTA)n Simple_repeat Simple_repeat 1 300 0 8 1617 477 0 0 0 chr6 135311803 135311856 -14205181 + (TC)n Simple_repeat Simple_repeat 1 53 0 8 1617 657 237 0 0 chr6 135311857 135311988 -14205049 - B1F SINE Alu -15 134 4 8 1617 325 265 163 22 chr6 135311989 135312124 -14204913 - MIR SINE MIR -66 196 43 8 1617 473 250 26 9 chr6 135315504 135315617 -14201420 + PB1D7 SINE Alu 5 119 -1 8 1617 504 0 0 0 chr6 135315625 135315681 -14201356 + (GA)n Simple_repeat Simple_repeat 1 56 0 8 1617 699 250 7 0 chr6 135316139 135316287 -14200750 - B1_Mur1 SINE Alu 0 149 1 8 1617 278 266 103 31 chr6 135316295 135316392 -14200645 - PB1D7 SINE Alu -8 112 9 8 1617 207 0 0 0 chr6 135317012 135317035 -14200002 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1617 304 286 0 0 chr6 135317425 135317502 -14199535 + ID4_ SINE ID 1 77 -6 8 1617 419 108 27 0 chr6 135317822 135317896 -14199141 + (GGGAGA)n Simple_repeat Simple_repeat 4 79 0 8 1617 531 222 17 8 chr6 135318605 135318723 -14198314 + PB1D9 SINE Alu 1 119 -1 8 1617 846 242 50 77 chr6 135318728 135319028 -14198009 + B4 SINE B4 1 292 0 8 1617 900 173 0 3 chr6 135319058 135319425 -14197612 + (CA)n Simple_repeat Simple_repeat 1 365 0 8 1617 252 77 0 0 chr6 135320369 135320408 -14196629 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 8 1617 215 0 67 0 chr6 135320407 135320437 -14196600 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 8 1617 319 290 53 33 chr6 135320437 135320587 -14196450 - L1MEe LINE L1 -4027 827 675 8 1617 730 172 16 16 chr6 135321524 135321648 -14195389 - B1_Mur2 SINE Alu -14 135 12 8 1617 318 230 0 108 chr6 135321574 135321657 -14195380 - MT2B LTR ERVL -361 240 167 8 1617 1008 233 14 33 chr6 135322016 135322229 -14194808 + B3 SINE B2 5 213 -3 8 1617 237 253 196 11 chr6 135323131 135323223 -14193814 + B1F SINE Alu 24 132 -17 8 1617 295 310 0 0 chr6 135323740 135323839 -14193198 - ID4 SINE ID -51 101 3 8 1617 883 124 319 0 chr6 135324040 135324209 -14192828 - URR1A DNA MER1_type -3 223 1 8 1617 450 0 0 0 chr6 135324544 135324594 -14192443 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1617 311 232 132 14 chr6 135325354 135325475 -14191562 - MIRc SINE MIR -22 240 112 8 1617 21 0 0 0 chr6 135327071 135327092 -14189945 + AT_rich Low_complexity Low_complexity 1 21 0 8 1617 333 0 0 0 chr6 135327448 135327485 -14189552 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 1617 409 100 0 67 chr6 135328056 135328073 -14188964 + 4.5SRNA scRNA scRNA 23 92 -2 8 1617 230 216 78 39 chr6 135328073 135328131 -14188906 + PB1D9 SINE Alu 41 96 -24 8 1617 467 198 156 16 chr6 135328131 135328259 -14188778 + B1_Mus2 SINE Alu 2 147 0 8 1617 230 216 78 39 chr6 135328259 135328277 -14188760 + PB1D9 SINE Alu 97 120 0 8 1617 789 145 21 3 chr6 135328408 135328552 -14188485 - B1_Mur4 SINE Alu 0 150 8 8 1617 681 304 43 38 chr6 135329174 135329380 -14187657 - B3A SINE B2 -6 192 1 8 1617 361 341 38 0 chr6 135329397 135329529 -14187508 - ID_B1 SINE B4 0 224 88 8 1617 262 266 16 0 chr6 135330334 135330398 -14186639 - ID4_ SINE ID -18 65 1 8 1617 227 250 0 0 chr6 135331256 135331300 -14185737 + G-rich Low_complexity Low_complexity 4 47 0 8 1617 188 114 45 0 chr6 135333795 135333839 -14183198 + A-rich Low_complexity Low_complexity 2 47 0 8 1617 807 204 14 7 chr6 135333856 135333994 -14183043 + B3A SINE B2 1 139 -59 8 1617 710 268 127 8 chr6 135334082 135334327 -14182710 + B4A SINE B4 3 276 -16 8 1617 616 119 18 0 chr6 135334348 135334457 -14182580 + (CATA)n Simple_repeat Simple_repeat 4 114 0 8 1617 1151 99 6 0 chr6 135334569 135334741 -14182296 + (GA)n Simple_repeat Simple_repeat 1 173 0 8 1617 405 255 31 21 chr6 135334746 135334842 -14182195 - PB1D9 SINE Alu -23 97 1 8 1617 1238 142 83 0 chr6 135334878 135335082 -14181955 + URR1A DNA MER1_type 6 226 0 8 1617 781 318 72 24 chr6 135335294 135335584 -14181453 - MLT2D LTR ERVL -109 305 2 8 1617 316 309 75 0 chr6 135336761 135336855 -14180182 - PB1D10 SINE Alu 0 117 17 9 1617 454 238 7 58 chr6 135337023 135337161 -14179876 + B1F1 SINE Alu 11 141 -8 9 1617 234 0 0 0 chr6 135337664 135337690 -14179347 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1617 593 183 58 0 chr6 135337690 135337794 -14179243 - ID_B1 SINE B4 -6 218 109 9 1617 505 194 152 8 chr6 135337794 135337815 -14179222 - B1F SINE Alu -6 143 1 9 1617 181 298 80 66 chr6 135338316 135338467 -14178570 + L2 LINE L2 1670 1822 -1597 9 1617 397 367 61 68 chr6 135338590 135339104 -14177933 - MER115 DNA Tip100 -34 659 68 9 1617 417 215 112 0 chr6 135339275 135339382 -14177655 - B1_Mur2 SINE Alu -1 148 30 9 1617 1604 196 125 8 chr6 135340094 135340469 -14176568 - MTD LTR MaLR 0 419 1 9 1617 24 32 0 0 chr6 135341035 135341066 -14175971 + AT_rich Low_complexity Low_complexity 1 31 0 9 1617 438 308 37 30 chr6 135341117 135341251 -14175786 + RSINE1 SINE B4 28 162 -3 9 1617 373 315 80 9 chr6 135341406 135341518 -14175519 + ID_B1 SINE B4 53 172 -52 9 1617 952 214 24 14 chr6 135341788 135342001 -14175036 + B3 SINE B2 1 215 -1 9 1617 246 204 0 0 chr6 135342782 135342831 -14174206 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1617 678 287 78 60 chr6 135342834 135343119 -14173918 - B4A SINE B4 -1 291 2 9 1617 280 303 18 41 chr6 135343667 135343851 -14173186 + L3b LINE CR1 3946 4136 -372 9 1617 32 43 0 0 chr6 135345009 135345055 -14171982 + AT_rich Low_complexity Low_complexity 1 46 0 9 1617 22 0 0 0 chr6 135345149 135345171 -14171866 + AT_rich Low_complexity Low_complexity 1 22 0 9 1617 1131 35 35 0 chr6 135345172 135345314 -14171723 + B1_Mm SINE Alu 1 147 0 9 1617 242 20 19 74 chr6 135345319 135345373 -14171664 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 9 1617 259 211 127 34 chr6 135345529 135345647 -14171390 - RMER15 LTR ERVL -148 427 299 9 1617 258 279 43 29 chr6 135346212 135346282 -14170755 - ORR1E LTR MaLR -286 73 3 9 1617 360 0 0 0 chr6 135346430 135346470 -14170567 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1617 321 244 13 13 chr6 135346945 135347024 -14170013 + ID4_ SINE ID 3 81 -2 9 1617 217 344 21 11 chr6 135348639 135348733 -14168304 + MIR SINE MIR 157 251 -11 9 1617 212 204 0 22 chr6 135348816 135348861 -14168176 + CT-rich Low_complexity Low_complexity 4 47 0 9 1617 228 57 0 79 chr6 135349478 135349516 -14167521 + ORR1B1 LTR MaLR 2 36 -358 9 1617 277 329 52 39 chr6 135349522 135349740 -14167297 + L2c LINE L2 2942 3157 -230 9 1617 1196 250 75 36 chr6 135349871 135350232 -14166805 - MTE2a LTR MaLR -4 375 1 9 1617 394 274 59 0 chr6 135350563 135350665 -14166372 - PB1D10 SINE Alu 0 117 10 9 1617 216 364 0 0 chr6 135350613 135350679 -14166358 - B4 SINE B4 -146 146 81 9 1617 507 216 60 7 chr6 135351932 135352087 -14164950 + L1_Mur3 LINE L1 4451 4644 -1499 9 1617 421 252 27 9 chr6 135352112 135352224 -14164813 + B3A SINE B2 6 119 -79 9 1617 355 100 29 0 chr6 135352312 135352382 -14164655 + (TG)n Simple_repeat Simple_repeat 1 72 0 9 1617 462 246 93 36 chr6 135352382 135352521 -14164516 - B3A SINE B2 -51 147 1 9 1617 1115 257 120 25 chr6 135353810 135354177 -14162860 + MTD LTR MaLR 4 405 -14 9 1617 559 289 7 22 chr6 135354265 135354403 -14162634 - ORR1E LTR MaLR -223 136 1 9 1617 326 312 32 6 chr6 135354835 135354993 -14162044 + GA-rich Low_complexity Low_complexity 5 166 0 9 1617 523 289 132 43 chr6 135356086 135356453 -14160584 - ORR1E LTR MaLR -4 390 1 9 1617 318 317 0 37 chr6 135356598 135356785 -14160252 + (CTGTG)n Simple_repeat Simple_repeat 1 180 0 9 1617 307 239 0 67 chr6 135356738 135356917 -14160120 + (TCTCTG)n Simple_repeat Simple_repeat 5 171 0 9 1617 457 349 46 20 chr6 135356951 135357147 -14159890 + MIR SINE MIR 60 260 -2 9 1617 180 0 0 0 chr6 135357280 135357300 -14159737 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 9 1617 229 306 35 23 chr6 135357465 135357552 -14159485 - MTEa LTR MaLR -13 366 279 9 1617 269 336 99 16 chr6 135357778 135357899 -14159138 - MLT1A1 LTR MaLR -276 132 2 9 1617 241 100 213 16 chr6 135358179 135358240 -14158797 + MamRep605 Unknown Unknown 337 409 -467 9 1617 576 0 0 0 chr6 135358277 135358341 -14158696 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1617 250 340 62 31 chr6 135358549 135358774 -14158263 + L2 LINE L2 2184 2415 -1004 9 1617 716 320 63 94 chr6 135359016 135359378 -14157659 + ORR1E LTR MaLR 1 351 -8 9 1617 307 268 112 35 chr6 135359367 135359510 -14157527 - MER112 DNA MER1_type -107 154 1 9 1617 586 167 0 37 chr6 135360864 135360999 -14156038 - B1_Mur3 SINE Alu 0 149 20 9 1617 261 0 0 0 chr6 135361283 135361312 -14155725 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1617 544 237 0 75 chr6 135361314 135361460 -14155577 + ORR1E LTR MaLR 48 182 -177 9 1617 792 219 73 24 chr6 135361478 135361684 -14155353 + B3 SINE B2 1 216 0 9 1617 952 138 0 22 chr6 135362440 135362618 -14154419 + C-rich Low_complexity Low_complexity 5 178 0 9 1617 214 179 0 82 chr6 135362621 135362667 -14154370 + polypyrimidine Low_complexity Low_complexity 18 60 0 9 1617 275 105 0 0 chr6 135362623 135362661 -14154376 + (TCCCC)n Simple_repeat Simple_repeat 2 39 0 9 1617 626 37 12 0 chr6 135362667 135362748 -14154289 + (TC)n Simple_repeat Simple_repeat 2 83 0 9 1617 214 179 0 82 chr6 135362748 135362762 -14154275 + polypyrimidine Low_complexity Low_complexity 5 17 0 9 1617 297 0 0 0 chr6 135362965 135362998 -14154039 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1617 538 297 104 74 chr6 135362998 135363267 -14153770 + B4 SINE B4 5 281 -11 9 1617 800 283 53 33 chr6 135363516 135363888 -14153149 - MLT2D LTR ERVL -15 399 28 9 1617 249 274 272 8 chr6 135363947 135363971 -14153066 - B4A SINE B4 -45 247 93 9 1617 438 247 51 10 chr6 135363971 135364069 -14152968 - PB1D10 SINE Alu -8 109 8 9 1617 551 318 38 101 chr6 135364261 135364548 -14152489 - B4A SINE B4 -23 269 1 9 1617 187 294 0 14 chr6 135365002 135365071 -14151966 + MIRc SINE MIR 90 157 -111 9 1617 231 278 32 202 chr6 135365296 135365454 -14151583 - Charlie4z DNA MER1_type -5 162 32 9 1617 892 220 22 17 chr6 135365481 135365661 -14151376 + B3A SINE B2 2 182 -16 9 1617 699 153 3 30 chr6 135365661 135366029 -14151008 + (CA)n Simple_repeat Simple_repeat 1 357 0 9 1617 201 233 23 0 chr6 135366058 135366101 -14150936 + CT-rich Low_complexity Low_complexity 3 46 0 9 1617 273 339 72 62 chr6 135366323 135366545 -14150492 + MIR SINE MIR 46 262 0 9 1617 771 42 0 0 chr6 135367062 135367157 -14149880 + (GAAA)n Simple_repeat Simple_repeat 1 95 0 9 1617 792 276 45 45 chr6 135367169 135367416 -14149621 + B4 SINE B4 4 250 -42 9 1617 463 269 33 8 chr6 135367834 135367954 -14149083 + LTR88b LTR Gypsy? 19 141 -696 9 1617 1292 256 52 22 chr6 135368329 135368653 -14148384 + ORR1D2 LTR MaLR 35 368 -2 9 1617 594 198 82 22 chr6 135369277 135369411 -14147626 + B1_Mm SINE Alu 1 142 -5 9 1617 230 235 0 34 chr6 135369437 135369525 -14147512 + A-rich Low_complexity Low_complexity 3 87 0 9 1617 369 271 122 0 chr6 135370133 135370240 -14146797 - PB1 SINE Alu -2 125 6 9 1617 310 270 16 98 chr6 135370150 135370273 -14146764 - ID_B1 SINE B4 -48 176 64 9 1617 376 356 0 0 chr6 135370426 135370530 -14146507 - PB1D10 SINE Alu -6 111 8 9 1617 393 75 0 0 chr6 135370533 135370586 -14146451 + (TCCCC)n Simple_repeat Simple_repeat 4 56 0 9 1617 479 258 94 0 chr6 135370586 135370714 -14146323 - B1F SINE Alu -6 143 4 9 1617 338 366 16 0 chr6 135371211 135371334 -14145703 + LTR89 LTR ERVL? 550 674 -205 9 1617 439 271 56 0 chr6 135372115 135372222 -14144815 - B1F SINE Alu -29 120 8 9 1617 835 274 132 6 chr6 135373171 135373490 -14143547 - ORR1E LTR MaLR 0 359 1 9 1617 386 262 79 60 chr6 135373807 135374059 -14142978 + RLTR21 LTR ERVK 1097 1353 -219 9 1617 974 281 122 11 chr6 135374050 135374403 -14142634 - MTD LTR MaLR -27 392 1 9 1617 279 247 59 128 chr6 135374403 135374503 -14142534 - MLT1J LTR MaLR -180 332 240 9 1617 386 196 13 0 chr6 135374719 135374878 -14142159 + CT-rich Low_complexity Low_complexity 1 161 0 9 1617 9189 3 0 0 chr6 135374880 135375955 -14141082 - L1Md_A LINE L1 0 6582 5508 9 1617 571 29 0 0 chr6 135375954 135376024 -14141013 - L1Md_A LINE L1 -1413 4470 4401 9 1617 14174 8 0 0 chr6 135376020 135377625 -14139412 + L1Md_A LINE L1 2762 4366 -1517 9 1617 943 143 6 11 chr6 135377625 135377802 -14139235 + CT-rich Low_complexity Low_complexity 1 176 0 9 1617 180 0 0 0 chr6 135377803 135377823 -14139214 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 9 1617 400 338 6 38 chr6 135377835 135377992 -14139045 - MLT1J LTR MaLR -317 195 44 9 1617 960 56 0 0 chr6 135378651 135378701 -14138336 + (TCC)n Simple_repeat Simple_repeat 2 51 0 9 1617 1012 97 22 11 chr6 135378701 135378879 -14138158 + (TTC)n Simple_repeat Simple_repeat 1 180 0 9 1617 960 56 0 0 chr6 135378879 135378953 -14138084 + (TCC)n Simple_repeat Simple_repeat 3 76 0 9 1617 184 326 40 20 chr6 135379153 135379253 -14137784 - MIR SINE MIR -88 120 19 9 1617 270 0 0 0 chr6 135379700 135379730 -14137307 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1617 519 17 0 0 chr6 135380068 135380128 -14136909 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 1617 468 0 0 0 chr6 135380128 135380179 -14136858 + (GA)n Simple_repeat Simple_repeat 2 53 0 9 1617 2515 326 48 35 chr6 135380179 135381401 -14135636 + Lx8 LINE L1 6207 7444 -29 9 1617 343 224 35 23 chr6 135381606 135381693 -14135344 - PB1D10 SINE Alu -7 110 23 1 1617 520 281 4 214 chr6 135381747 135381874 -14135163 + ID_B1 SINE B4 2 109 -115 1 1617 468 0 0 0 chr6 135381874 135381926 -14135111 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1617 520 281 4 214 chr6 135381926 135381961 -14135076 + ID_B1 SINE B4 110 221 -1 1 1617 682 134 9 35 chr6 135381961 135382077 -14134960 + B1_Mus1 SINE Alu 36 148 0 1 1617 189 180 0 0 chr6 135382667 135382717 -14134320 + (CCA)n Simple_repeat Simple_repeat 1 50 0 1 1617 582 264 76 54 chr6 135384042 135384215 -14132822 + B3 SINE B2 1 180 -36 1 1617 396 0 0 0 chr6 135384215 135384259 -14132778 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1617 483 280 13 26 chr6 135385500 135385654 -14131383 + L1MA10 LINE L1 6173 6324 -10 1 1617 1349 197 90 19 chr6 135386000 135386355 -14130682 + MTD LTR MaLR 1 386 -14 1 1617 377 355 54 34 chr6 135386457 135386661 -14130376 + MIRb SINE MIR 34 241 -27 1 1617 1010 250 38 17 chr6 135386751 135386991 -14130046 + B4A SINE B4 22 266 -26 1 1617 474 18 0 0 chr6 135387004 135387059 -14129978 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1617 459 0 0 0 chr6 135387059 135387109 -14129928 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1617 281 305 46 28 chr6 135387758 135387866 -14129171 - B1F1 SINE Alu 0 117 8 1 1617 2006 179 42 52 chr6 135387979 135388404 -14128633 + MTC LTR MaLR 1 421 0 1 1617 3889 233 107 26 chr6 135388404 135389436 -14127601 + MTC-int LTR MaLR 3 1117 -253 1 1617 2684 155 2 9 chr6 135389436 135389859 -14127178 - MTC LTR MaLR -1 420 1 1 1617 1251 179 87 4 chr6 135389859 135390100 -14126937 + MTC-int LTR MaLR 1249 1509 0 1 1617 1799 141 151 12 chr6 135390100 135390437 -14126600 + MTC LTR MaLR 1 384 0 1 1617 3961 52 0 2 chr6 135390492 135390969 -14126068 - L1_Mus1 LINE L1 0 6567 6092 1 1617 281 373 0 0 chr6 135391167 135391242 -14125795 + MIRm SINE MIR 201 275 -1 1 1617 1142 250 53 4 chr6 135392515 135392780 -14124257 + B4A SINE B4 1 278 -14 1 1617 232 299 0 0 chr6 135392782 135392849 -14124188 + (TGAA)n Simple_repeat Simple_repeat 1 67 0 1 1617 770 212 204 59 chr6 135393233 135393488 -14123549 + ORR1C2 LTR MaLR 1 292 -92 1 1617 335 318 76 19 chr6 135393466 135393623 -14123414 + RMER15 LTR ERVL 374 539 -36 1 1617 198 250 41 68 chr6 135394330 135394403 -14122634 + L2 LINE L2 432 502 -2917 1 1617 576 0 0 0 chr6 135394464 135394528 -14122509 + (TAA)n Simple_repeat Simple_repeat 1 64 0 1 1617 270 290 0 0 chr6 135394537 135394606 -14122431 - ID4 SINE ID -14 69 1 1 1617 367 250 17 59 chr6 135394606 135394725 -14122312 - PB1D10 SINE Alu 0 117 4 1 1617 303 326 115 57 chr6 135395626 135395818 -14121219 - HAL1-3A_ME LINE L1 -414 2444 2242 1 1617 1242 204 192 117 chr6 135396154 135396648 -14120389 - MT2A LTR ERVL 0 533 3 1 202 2311 181 32 12 chr6 135397188 135397591 -14119446 - MTC LTR MaLR 0 421 11 1 1618 327 259 78 11 chr6 135397744 135397834 -14119203 + PB1D10 SINE Alu 21 116 -1 1 1618 187 323 78 16 chr6 135397834 135397963 -14119074 + L2 LINE L2 1755 1891 -1528 1 1618 1482 215 123 102 chr6 135398121 135398161 -14118876 - MT2A LTR ERVL 0 533 492 1 1618 240 35 0 0 chr6 135398161 135398190 -14118847 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1618 1482 215 123 102 chr6 135398190 135398671 -14118366 - MT2A LTR ERVL -42 491 2 1 1618 334 250 89 32 chr6 135398700 135398824 -14118213 - ORR1A3-int LTR MaLR -1289 674 544 1 1618 1436 139 49 8 chr6 135398824 135399071 -14117966 - MERVL_2A-int LTR ERVL -153 5608 5352 1 1618 5623 158 53 16 chr6 135399090 135400082 -14116955 - MERVL_2A-int LTR ERVL -4713 1048 20 1 1618 466 222 0 0 chr6 135400263 135400353 -14116684 + PB1D10 SINE Alu 28 117 0 1 1618 666 340 39 116 chr6 135400613 135400664 -14116373 + L2 LINE L2 2090 2134 -1285 1 1618 609 269 282 18 chr6 135400664 135400948 -14116089 - ORR1E LTR MaLR 0 359 1 1 1618 666 340 39 116 chr6 135400948 135401681 -14115356 + L2 LINE L2 2135 2814 -605 1 1618 1072 264 38 0 chr6 135401681 135401942 -14115095 + B4A SINE B4 3 273 -19 1 1618 666 340 39 116 chr6 135401942 135401975 -14115062 + L2 LINE L2 2815 2845 -574 1 1618 1053 145 0 0 chr6 135402087 135402266 -14114771 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1 1618 423 0 0 0 chr6 135402267 135402314 -14114723 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1618 223 254 236 0 chr6 135402770 135402880 -14114157 + ID_B1 SINE B4 87 222 -2 1 1618 441 0 0 0 chr6 135402910 135402959 -14114078 + (CAAG)n Simple_repeat Simple_repeat 2 50 0 1 1618 235 338 189 29 chr6 135403020 135403300 -14113737 - MLT1A1 LTR MaLR -12 396 72 1 1618 405 0 0 0 chr6 135403314 135403359 -14113678 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1618 513 364 60 46 chr6 135403409 135403544 -14113493 - MTE2b LTR MaLR -3 376 242 1 1618 434 266 154 28 chr6 135403544 135403675 -14113362 + RSINE1 SINE B4 3 151 -14 1 1618 243 0 0 0 chr6 135403675 135403702 -14113335 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1618 434 266 154 28 chr6 135403702 135403713 -14113324 + RSINE1 SINE B4 152 162 -3 1 1618 513 364 60 46 chr6 135403713 135403943 -14113094 - MTE2b LTR MaLR -138 241 7 1 1618 246 216 0 0 chr6 135404000 135404074 -14112963 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1618 12315 22 0 0 chr6 135404500 135405908 -14111129 + L1Md_T LINE L1 4179 5586 -297 1 1618 8732 28 0 0 chr6 135405908 135406904 -14110133 + L1Md_T LINE L1 5587 6582 0 1 1618 2362 72 20 62 chr6 135407167 135407508 -14109529 + ORR1A2 LTR MaLR 1 327 0 1 1618 321 26 0 0 chr6 135408307 135408345 -14108692 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1618 495 48 0 0 chr6 135408345 135408407 -14108630 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1618 666 0 0 0 chr6 135408473 135408547 -14108490 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 1 1618 2025 133 84 17 chr6 135408831 135409175 -14107862 - ORR1B2 LTR MaLR 0 367 1 1 1618 225 0 0 0 chr6 135409616 135409641 -14107396 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1618 684 0 0 0 chr6 135409641 135409716 -14107321 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 1618 876 332 22 30 chr6 135409741 135410008 -14107029 - B4A SINE B4 -16 276 12 1 1618 261 351 131 6 chr6 135410903 135411078 -14105959 + MIR SINE MIR 21 217 -45 1 1618 504 0 0 0 chr6 135411586 135411642 -14105395 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1618 213 196 59 0 chr6 135411959 135412010 -14105027 + CT-rich Low_complexity Low_complexity 5 58 0 1 1618 315 257 16 51 chr6 135412032 135412159 -14104878 - PB1D10 SINE Alu -5 144 27 1 1618 186 103 0 0 chr6 135412992 135413021 -14104016 + (CTG)n Simple_repeat Simple_repeat 2 30 0 1 1618 201 59 88 0 chr6 135415187 135415221 -14101816 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1 1618 241 135 39 0 chr6 135416019 135416071 -14100966 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 1 1618 1355 44 4 0 chr6 135416074 135416324 -14100713 + (TCTA)n Simple_repeat Simple_repeat 1 251 0 1 1618 1209 294 64 51 chr6 135416327 135416814 -14100223 - MLT1D LTR MaLR 0 505 13 1 1618 324 0 0 0 chr6 135416869 135416905 -14100132 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1618 420 97 0 0 chr6 135416905 135416966 -14100071 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1618 1244 181 0 9 chr6 135417063 135417275 -14099762 - B3 SINE B2 -6 210 1 1 1618 584 286 94 80 chr6 135417977 135418148 -14098889 - L1MA6 LINE L1 -355 5957 5770 1 1618 234 0 0 0 chr6 135418148 135418174 -14098863 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1618 584 274 100 76 chr6 135418174 135418439 -14098598 - L1MA6 LINE L1 -543 5769 5522 1 1618 3741 116 44 17 chr6 135418633 135419228 -14097809 - Lx2A1 LINE L1 0 7008 6398 1 1618 6415 138 66 13 chr6 135419228 135420029 -14097008 + L1_Mur2 LINE L1 3868 4729 -1148 1 1618 5338 31 5 17 chr6 135420029 135420684 -14096353 + L1Md_F3 LINE L1 5938 6584 0 1 1618 6415 138 66 13 chr6 135420684 135421013 -14096024 + L1_Mur2 LINE L1 4730 5058 -819 1 1618 279 332 88 74 chr6 135421019 135421315 -14095722 + L2c LINE L2 3084 3383 -4 1 1618 212 156 44 0 chr6 135421425 135421495 -14095542 + T-rich Low_complexity Low_complexity 1 73 0 1 1618 1053 238 5 0 chr6 135421523 135421729 -14095308 - B3 SINE B2 -9 207 1 1 1618 557 246 19 148 chr6 135421820 135422030 -14095007 - Lx8 LINE L1 -137 7336 7154 1 1618 317 255 179 19 chr6 135422573 135422729 -14094308 - MTEa LTR MaLR -2 377 197 1 1618 299 113 0 19 chr6 135422736 135422790 -14094247 + (AGGGGG)n Simple_repeat Simple_repeat 4 56 0 1 1618 273 222 0 0 chr6 135422889 135422943 -14094094 - MTEa LTR MaLR -325 54 1 1 1618 513 0 0 0 chr6 135423533 135423590 -14093447 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1618 511 300 55 35 chr6 135423590 135423735 -14093302 - B3A SINE B2 -47 151 4 1 1618 680 260 156 19 chr6 135424020 135424283 -14092754 + RMER15 LTR ERVL 276 574 -1 1 1618 537 349 58 31 chr6 135424290 135424583 -14092454 + MLT1A0 LTR MaLR 15 315 -50 1 1618 649 301 37 33 chr6 135424583 135424824 -14092213 - RMER15 LTR ERVL -326 249 8 1 1618 245 263 24 0 chr6 135424953 135425041 -14091996 - Lx8 LINE L1 -490 7154 7099 1 1618 1035 272 62 27 chr6 135425038 135425374 -14091663 - Lx8 LINE L1 -777 6696 6349 1 1618 239 228 0 8 chr6 135425610 135425734 -14091303 + (CA)n Simple_repeat Simple_repeat 1 123 0 1 1618 302 299 62 84 chr6 135425736 135425915 -14091122 + HAL1-3A_ME LINE L1 1976 2150 -708 1 1618 381 276 80 49 chr6 135426256 135426519 -14090518 - L1M5 LINE L1 -825 5321 5051 1 1618 435 308 79 26 chr6 135426524 135426751 -14090286 - Kanga2_a DNA Tc2 -533 355 117 1 1618 839 243 6 0 chr6 135427451 135427632 -14089405 + B3A SINE B2 1 182 -16 1 1618 417 167 0 0 chr6 135427632 135427710 -14089327 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1618 750 60 0 0 chr6 135428253 135428353 -14088684 + (TC)n Simple_repeat Simple_repeat 2 101 0 1 1618 221 241 35 0 chr6 135428775 135428833 -14088204 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1 1618 995 254 26 69 chr6 135428846 135429151 -14087886 - B4 SINE B4 0 292 1 1 1618 330 321 45 27 chr6 135430329 135430441 -14086596 + MLT1A0 LTR MaLR 252 365 0 1 1618 515 16 16 0 chr6 135430848 135430912 -14086125 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 1618 358 328 19 57 chr6 135433870 135434080 -14082957 - Lx8 LINE L1 -245 7228 7027 1 1618 304 346 92 26 chr6 135434092 135434395 -14082642 + L2 LINE L2 2436 2758 -661 1 1618 756 246 48 87 chr6 135434436 135434725 -14082312 + B4 SINE B4 2 279 -13 1 1618 185 307 42 83 chr6 135434767 135434863 -14082174 + L2 LINE L2 2782 2873 -546 1 1618 602 315 19 39 chr6 135435745 135435950 -14081087 + B4A SINE B4 2 202 -90 1 1618 252 264 68 102 chr6 135436110 135436228 -14080809 - BC1_Mm scRNA scRNA -34 118 5 1 1618 417 296 112 29 chr6 135437610 135437850 -14079187 - L1MC4a LINE L1 -1950 5932 5673 1 1618 2347 96 3 58 chr6 135437926 135438268 -14078769 - ORR1A2 LTR MaLR -4 323 1 1 1618 406 191 22 67 chr6 135438268 135438318 -14078719 - ORR1A2-int LTR MaLR 0 1963 1918 1 1618 1556 170 27 12 chr6 135438318 135438495 -14078542 - RMER17C LTR ERVK -2 408 231 1 1618 467 16 48 0 chr6 135438495 135438557 -14078480 + (CCCTAA)n Simple_repeat Simple_repeat 1 65 0 1 1618 1556 170 27 12 chr6 135438557 135438707 -14078330 - RMER17C LTR ERVK -180 230 76 1 1618 567 203 123 77 chr6 135438707 135439013 -14078024 - RLTR9A LTR ERVK 0 368 10 1 1618 715 150 37 15 chr6 135439009 135439144 -14077893 - RMER17B LTR ERVK -655 303 166 1 1618 9680 156 26 13 chr6 135439142 135440849 -14076188 - ORR1A2-int LTR MaLR -63 1729 1 1 1618 2403 68 15 58 chr6 135440849 135441191 -14075846 - ORR1A2 LTR MaLR 0 327 1 1 1618 305 195 22 79 chr6 135441204 135441293 -14075744 + RLTR25A LTR ERVK 506 589 -514 1 1618 769 32 0 0 chr6 135441219 135441312 -14075725 + B1_Mm SINE Alu 45 137 -10 1 1618 188 34 0 33 chr6 135441312 135441342 -14075695 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1618 1080 273 96 37 chr6 135441364 135441718 -14075319 - MTEa LTR MaLR 0 379 5 1 1618 1897 223 97 16 chr6 135442510 135443006 -14074031 + Lx8 LINE L1 6909 7444 -29 1 1618 272 300 114 126 chr6 135442778 135443033 -14074004 + RMER1C Other Other 1068 1319 -23 1 1618 1301 117 0 5 chr6 135443119 135443308 -14073729 - B2_Mm2 SINE B2 0 195 8 1 1618 230 279 24 71 chr6 135443235 135443320 -14073717 - B4A SINE B4 -211 81 1 1 1618 552 342 47 84 chr6 135443480 135443777 -14073260 + B4 SINE B4 7 292 0 1 1618 606 28 0 0 chr6 135443823 135443895 -14073142 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 1618 261 0 0 0 chr6 135444008 135444037 -14073000 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1618 358 387 42 0 chr6 135444054 135444222 -14072815 - LTR33A LTR ERVL -92 428 254 1 1618 836 266 44 104 chr6 135444724 135445110 -14071927 + MTE2a LTR MaLR 16 378 -1 1 1618 995 211 9 33 chr6 135446663 135446874 -14070163 + B3 SINE B2 1 206 -10 1 1618 1101 184 332 6 chr6 135447300 135447634 -14069403 + Lx4A LINE L1 6616 7058 0 1 1618 540 252 73 63 chr6 135447770 135447938 -14069099 - ORR1C2 LTR MaLR -60 324 149 1 1618 1035 117 0 0 chr6 135447951 135448122 -14068915 + (GA)n Simple_repeat Simple_repeat 2 172 0 1 1618 373 194 15 0 chr6 135448123 135448190 -14068847 - ORR1C2 LTR MaLR -306 68 1 1 1618 686 230 31 47 chr6 135448684 135448875 -14068162 + B3A SINE B2 6 193 -5 1 1618 865 102 0 0 chr6 135448875 135449002 -14068035 + B1_Mus1 SINE Alu 1 127 -21 1 1618 672 13 0 0 chr6 135449007 135449084 -14067953 + (TAAA)n Simple_repeat Simple_repeat 1 77 0 1 1618 209 131 32 32 chr6 135449661 135449724 -14067313 + GA-rich Low_complexity Low_complexity 2 64 0 1 1618 401 240 37 37 chr6 135449822 135449930 -14067107 + PB1D10 SINE Alu 7 114 -3 1 1618 531 315 12 78 chr6 135450505 135450760 -14066277 + B4A SINE B4 9 246 -46 1 1618 270 134 45 0 chr6 135450827 135450894 -14066143 + CT-rich Low_complexity Low_complexity 4 73 0 1 1618 522 0 0 0 chr6 135452769 135452827 -14064210 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1618 188 60 19 74 chr6 135453019 135453073 -14063964 + A-rich Low_complexity Low_complexity 3 53 0 1 1618 3462 180 158 55 chr6 135453648 135454478 -14062559 - RMER1B Other Other -6 1060 146 1 1618 328 218 77 0 chr6 135454739 135454817 -14062220 - RMER1B Other Other -922 144 61 1 1618 252 298 55 46 chr6 135455225 135455334 -14061703 - MTEa LTR MaLR -269 110 1 1 1618 349 105 58 0 chr6 135455496 135455582 -14061455 + (TA)n Simple_repeat Simple_repeat 2 92 0 1 1618 309 135 0 0 chr6 135455581 135455633 -14061404 + (ATGGTG)n Simple_repeat Simple_repeat 5 56 0 1 1618 426 39 0 0 chr6 135455634 135455686 -14061351 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1618 538 273 28 7 chr6 135455691 135455835 -14061202 - RSINE1 SINE B4 -8 157 11 1 1618 1065 214 149 4 chr6 135456650 135456912 -14060125 - MTD LTR MaLR -115 304 5 1 1618 337 270 106 133 chr6 135457539 135457795 -14059242 + MTE2a LTR MaLR 1 249 -130 1 1618 458 331 28 6 chr6 135458208 135458387 -14058650 - MLT1A0 LTR MaLR 0 365 183 1 1618 881 179 168 0 chr6 135458534 135458713 -14058324 - B3 SINE B2 -7 209 1 1 1618 23 33 0 0 chr6 135458862 135458892 -14058145 + AT_rich Low_complexity Low_complexity 1 30 0 1 1618 202 287 110 25 chr6 135460155 135460273 -14056764 - MIRc SINE MIR -139 129 2 1 1618 437 50 0 16 chr6 135460396 135460457 -14056580 + (TTCA)n Simple_repeat Simple_repeat 1 60 0 1 1618 236 241 0 0 chr6 135460824 135460882 -14056155 - MLT1I LTR MaLR -3 408 351 1 1618 226 155 17 33 chr6 135461120 135461180 -14055857 - RMER15 LTR ERVL -67 508 450 1 1618 421 222 40 20 chr6 135461293 135461394 -14055643 - Lx8 LINE L1 -338 7135 7033 1 1618 6019 139 42 12 chr6 135461916 135462940 -14054097 + RLTR25A LTR ERVK 1 1063 -40 1 1618 2117 136 66 25 chr6 135462940 135463333 -14053704 + RLTR9E LTR ERVK 1 409 0 1 1618 6019 139 42 12 chr6 135463333 135463379 -14053658 + RLTR25A LTR ERVK 1064 1103 0 1 1618 208 289 0 0 chr6 135465020 135465065 -14051972 + polypyrimidine Low_complexity Low_complexity 3 47 0 1 1618 1534 247 40 18 chr6 135466554 135466950 -14050087 + Lx9 LINE L1 7069 7473 -171 1 1618 4277 55 2 0 chr6 135467201 135467726 -14049311 - L1Md_F2 LINE L1 -4 6578 6053 1 1618 180 280 122 85 chr6 135468973 135469137 -14047900 + L2 LINE L2 2723 2892 -527 1 1618 719 326 51 20 chr6 135469483 135469834 -14047203 + MLT1A0 LTR MaLR 1 362 -3 1 1618 186 220 0 0 chr6 135469906 135469965 -14047072 + (CATG)n Simple_repeat Simple_repeat 1 59 0 1 1618 222 308 0 103 chr6 135470935 135471013 -14046024 + ID2 SINE ID 4 73 -10 1 1618 294 29 0 0 chr6 135471013 135471048 -14045989 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1618 1420 197 17 63 chr6 135471339 135471751 -14045286 - RMER10B LTR ERVL 0 398 6 1 1618 471 258 22 45 chr6 135472093 135472227 -14044810 + RSINE1 SINE B4 30 160 -5 1 1618 2132 153 40 10 chr6 135472600 135472996 -14044041 + MTC LTR MaLR 6 413 -8 1 1618 228 244 0 0 chr6 135473120 135473165 -14043872 + (CATA)n Simple_repeat Simple_repeat 3 47 0 1 1618 335 306 105 24 chr6 135473709 135473957 -14043080 - L1MEd LINE L1 -4869 1250 983 1 1618 766 243 51 0 chr6 135475379 135475556 -14041481 + B3A SINE B2 8 193 -5 1 1618 1413 34 0 0 chr6 135476368 135476547 -14040490 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 1618 255 281 18 119 chr6 135478304 135478413 -14038624 + B1F SINE Alu 30 136 -13 1 1618 330 195 0 0 chr6 135479218 135479295 -14037742 + GA-rich Low_complexity Low_complexity 2 78 0 1 1618 470 218 13 66 chr6 135479802 135479954 -14037083 - B4A SINE B4 -61 231 88 1 1618 189 0 0 0 chr6 135480008 135480029 -14037008 + (GTTTG)n Simple_repeat Simple_repeat 3 23 0 1 1618 203 140 23 23 chr6 135480360 135480404 -14036633 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 1 1618 215 209 0 0 chr6 135480427 135480470 -14036567 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1618 180 0 0 0 chr6 135480490 135480510 -14036527 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1618 513 0 0 0 chr6 135480885 135480942 -14036095 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1618 903 279 80 55 chr6 135481464 135481828 -14035209 + MTEa LTR MaLR 7 379 0 1 1618 189 244 47 47 chr6 135481828 135481914 -14035123 - MIRb SINE MIR -63 205 120 1 1618 337 330 50 11 chr6 135482340 135482521 -14034516 - L1MC5 LINE L1 -452 7509 7322 1 1618 240 35 0 0 chr6 135482820 135482849 -14034188 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1618 462 308 101 53 chr6 135482855 135483102 -14033935 - B4 SINE B4 0 292 34 1 1618 811 261 14 0 chr6 135483168 135483375 -14033662 - B3 SINE B2 -6 210 1 1 1618 198 0 0 0 chr6 135483587 135483609 -14033428 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1618 439 266 84 107 chr6 135483660 135483959 -14033078 - B4 SINE B4 0 292 1 1 1618 207 105 53 0 chr6 135483992 135484049 -14032988 + T-rich Low_complexity Low_complexity 1 60 0 1 1618 1202 42 7 0 chr6 135484049 135484192 -14032845 - B1_Mm SINE Alu 0 147 4 1 1618 546 274 0 14 chr6 135484261 135484409 -14032628 + B1F SINE Alu 2 147 -2 1 1618 387 261 50 36 chr6 135484611 135484750 -14032287 - ID_B1 SINE B4 0 224 84 1 1618 927 86 0 0 chr6 135484955 135485094 -14031943 + (TC)n Simple_repeat Simple_repeat 2 140 0 1 1618 23 54 0 0 chr6 135485688 135485725 -14031312 + AT_rich Low_complexity Low_complexity 1 37 0 1 1618 496 270 0 159 chr6 135485735 135485924 -14031113 - RSINE1 SINE B4 -3 162 4 1 1618 550 239 125 60 chr6 135486093 135486293 -14030744 - MTEa LTR MaLR 0 379 167 1 1618 7297 90 33 0 chr6 135486293 135487280 -14029757 - Lx LINE L1 -10 6644 5625 1 1618 5080 154 21 5 chr6 135487285 135488133 -14028904 + Lx LINE L1 4750 5611 -272 1 1618 347 316 36 22 chr6 135488149 135488288 -14028749 - MTEa LTR MaLR -230 149 9 1 1618 443 33 33 0 chr6 135490658 135490718 -14026319 + (CCCCCT)n Simple_repeat Simple_repeat 5 66 0 1 1618 420 143 0 0 chr6 135491138 135491208 -14025829 + (TATG)n Simple_repeat Simple_repeat 2 71 0 1 1618 196 254 15 31 chr6 135491901 135491966 -14025071 + MIR SINE MIR 70 133 -129 1 1618 430 307 21 0 chr6 135492967 135493107 -14023930 + (TG)n Simple_repeat Simple_repeat 2 144 0 1 1618 495 236 20 48 chr6 135493198 135493345 -14023692 - B1_Mm SINE Alu 0 147 5 1 1618 657 0 0 0 chr6 135494268 135494341 -14022696 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1618 1089 96 0 7 chr6 135494356 135494503 -14022534 - B1_Mus1 SINE Alu -2 146 1 1 1618 1451 260 51 36 chr6 135494639 135494866 -14022171 - MTD LTR MaLR -2 417 172 1 1618 4500 132 9 19 chr6 135494866 135495555 -14021482 - Lx4A LINE L1 -1 7057 6376 1 1618 1451 260 51 36 chr6 135495555 135495715 -14021322 - MTD LTR MaLR -248 171 18 1 1618 195 100 0 0 chr6 135495715 135495745 -14021292 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1 1618 1451 260 51 36 chr6 135495745 135495767 -14021270 - MTD LTR MaLR -402 17 1 1 1618 436 114 84 6 chr6 135496789 135496956 -14020081 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1618 753 293 48 36 chr6 135496962 135497391 -14019646 - MLT2B3 LTR ERVL -35 532 1 1 1618 519 347 71 43 chr6 135497579 135497831 -14019206 - MLT1E3 LTR MaLR -140 484 226 1 1618 1942 158 14 17 chr6 135497831 135498191 -14018846 + ORR1B2 LTR MaLR 1 359 -8 1 1618 251 326 21 0 chr6 135498228 135498323 -14018714 - MLT1E3 LTR MaLR -425 199 103 1 1618 350 296 23 0 chr6 135499227 135499315 -14017722 - B1F1 SINE Alu -58 91 2 1 1618 550 242 169 43 chr6 135499547 135499873 -14017164 + MTD LTR MaLR 5 405 -14 1 1618 299 289 43 26 chr6 135500009 135500126 -14016911 - B1F2 SINE Alu -1 116 1 1 1618 203 0 37 0 chr6 135500779 135500806 -14016231 + (TCCTG)n Simple_repeat Simple_repeat 5 32 0 2 1618 293 238 16 23 chr6 135501107 135501236 -14015801 + CT-rich Low_complexity Low_complexity 3 130 0 3 1618 393 217 0 0 chr6 135501409 135501478 -14015559 - URR1B DNA MER1_type -153 72 4 4 1618 884 218 52 46 chr6 135501478 135501718 -14015319 - MTD LTR MaLR -178 243 1 5 1618 207 333 82 45 chr6 135501910 135502020 -14015017 + L2b LINE L2 3238 3351 -24 6 1618 562 263 14 7 chr6 135502399 135502537 -14014500 - ID_B1 SINE B4 0 224 86 7 1618 193 161 0 0 chr6 135503199 135503230 -14013807 + L2b LINE L2 3329 3359 -16 8 1618 8169 57 6 8 chr6 135503797 135504858 -14012179 - L1_Mus1 LINE L1 -1 6566 5546 9 1618 283 286 29 50 chr6 135504833 135504939 -14012098 - L1MD1 LINE L1 -23 6219 6113 1 1618 779 253 20 40 chr6 135504939 135505141 -14011896 + B3A SINE B2 1 198 0 1 1618 283 286 29 50 chr6 135505141 135505174 -14011863 - L1MD1 LINE L1 -130 6112 6083 1 1618 188 135 27 0 chr6 135505188 135505225 -14011812 + C-rich Low_complexity Low_complexity 6 43 0 1 1618 639 332 39 67 chr6 135505243 135505601 -14011436 + ORR1E LTR MaLR 8 355 -4 1 1618 1965 112 68 62 chr6 135505756 135506081 -14010956 + ORR1A2 LTR MaLR 1 327 0 1 1618 354 204 0 0 chr6 135506204 135506317 -14010720 + (TG)n Simple_repeat Simple_repeat 2 114 0 1 1618 1258 216 91 26 chr6 135506567 135506918 -14010119 + ORR1D1 LTR MaLR 1 374 0 1 1618 340 185 148 0 chr6 135507132 135507213 -14009824 - RCHARR1 DNA MER1_type 0 974 882 1 1618 265 276 166 40 chr6 135507294 135507445 -14009592 + B4 SINE B4 110 279 -13 1 1618 269 309 0 0 chr6 135507457 135507525 -14009512 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1618 593 182 27 20 chr6 135507531 135507677 -14009360 - RCHARR1 DNA MER1_type -75 899 753 1 1618 1299 254 140 2 chr6 135507679 135508086 -14008951 - RCHARR1 DNA MER1_type -505 469 7 1 1618 597 28 0 0 chr6 135508349 135508420 -14008617 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 1618 300 256 0 0 chr6 135509121 135509207 -14007830 + CT-rich Low_complexity Low_complexity 4 89 0 2 1618 365 307 9 9 chr6 135509288 135509403 -14007634 - PB1D10 SINE Alu -2 115 1 2 1618 2622 166 43 6 chr6 135510619 135511103 -14005934 - RLTR28 LTR ERVL -14 510 9 2 1618 246 373 0 12 chr6 135511339 135511423 -14005614 - ID4_ SINE ID 0 83 1 2 1618 266 211 13 26 chr6 135511469 135511547 -14005490 - PB1D10 SINE Alu -40 77 1 2 1618 257 294 110 0 chr6 135512319 135512428 -14004609 - MIRc SINE MIR -121 147 27 2 1618 350 191 7 22 chr6 135512846 135512985 -14004052 + GA-rich Low_complexity Low_complexity 3 139 0 2 1618 32 0 0 0 chr6 135513550 135513582 -14003455 + AT_rich Low_complexity Low_complexity 1 32 0 2 1618 248 306 50 10 chr6 135514037 135514136 -14002901 + MTEb LTR MaLR 1 103 -276 2 1618 1149 246 40 76 chr6 135514124 135514245 -14002792 + MTEa LTR MaLR 23 141 -238 3 1618 459 35 0 0 chr6 135514245 135514302 -14002735 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1618 1149 246 40 76 chr6 135514302 135514550 -14002487 + MTEa LTR MaLR 142 379 0 3 1618 565 248 68 0 chr6 135514841 135515002 -14002035 + MER2 DNA MER2_type 10 181 -164 3 1618 257 307 13 39 chr6 135515007 135515085 -14001952 - ID SINE ID -142 82 7 3 1618 482 218 0 68 chr6 135515093 135515226 -14001811 - PB1 SINE Alu -2 125 2 3 1618 324 235 134 87 chr6 135515234 135515383 -14001654 + MER2 DNA MER2_type 190 345 0 3 1618 486 0 0 0 chr6 135516015 135516069 -14000968 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1618 315 0 0 0 chr6 135516069 135516103 -14000934 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1618 2879 77 33 82 chr6 135516130 135516582 -14000455 - RLTR23 LTR ERV1 0 430 1 3 1618 239 275 62 0 chr6 135516675 135516755 -14000282 - ORR1E LTR MaLR -274 85 1 3 1618 405 176 0 0 chr6 135517521 135517589 -13999448 - PB1D9 SINE Alu -43 77 10 3 1618 277 279 0 16 chr6 135517534 135517596 -13999441 - B4A SINE B4 -143 149 89 4 1618 637 191 25 0 chr6 135517954 135518116 -13998921 + (TATG)n Simple_repeat Simple_repeat 4 169 0 4 1618 716 222 0 6 chr6 135518136 135518317 -13998720 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1618 25 0 0 0 chr6 135519033 135519058 -13997979 + AT_rich Low_complexity Low_complexity 1 25 0 4 1618 612 304 141 40 chr6 135519377 135519775 -13997262 - MLT1C LTR MaLR -4 463 26 4 1618 608 295 109 5 chr6 135519797 135519890 -13997147 - ID_B1 SINE B4 -21 203 102 4 1618 1289 136 0 5 chr6 135519890 135520082 -13996955 - B2_Mm2 SINE B2 -2 193 3 4 1618 608 295 109 5 chr6 135520082 135520172 -13996865 - ID_B1 SINE B4 -123 101 1 4 1618 293 345 0 0 chr6 135520620 135520704 -13996333 - RSINE1 SINE B4 -8 157 74 4 1618 716 249 28 17 chr6 135521206 135521382 -13995655 - B3 SINE B2 -1 215 38 4 1618 486 289 0 0 chr6 135522354 135522475 -13994562 + MTEb LTR MaLR 1 121 -258 4 1618 735 270 30 15 chr6 135522569 135522772 -13994265 + MTEb LTR MaLR 154 359 -20 4 1618 866 272 97 8 chr6 135523073 135523340 -13993697 - Lx8 LINE L1 -972 6501 6211 5 1618 585 0 0 0 chr6 135523345 135523410 -13993627 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1618 387 0 0 0 chr6 135523410 135523452 -13993585 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1618 442 204 2 2 chr6 135523566 135523658 -13993379 - B4A SINE B4 -199 93 2 5 1618 549 44 0 0 chr6 135524268 135524336 -13992701 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 5 1618 189 323 124 10 chr6 135524371 135524468 -13992569 + L2a LINE L2 3298 3405 -21 5 1618 735 44 0 0 chr6 135524484 135524575 -13992462 + (TGGA)n Simple_repeat Simple_repeat 4 94 0 5 1618 1073 265 53 47 chr6 135524969 135525330 -13991707 + MLT1A0 LTR MaLR 3 365 0 5 1618 1580 241 50 5 chr6 135525975 135526375 -13990662 - MTD LTR MaLR 0 419 2 5 1618 880 188 70 15 chr6 135527753 135527953 -13989084 + B3 SINE B2 2 212 -4 5 1619 389 219 103 10 chr6 135530429 135530526 -13986511 + PB1D10 SINE Alu 1 106 -11 6 1619 216 333 0 15 chr6 135530542 135530609 -13986428 + ID4 SINE ID 12 77 -6 6 1619 486 0 0 0 chr6 135530777 135530831 -13986206 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1619 523 289 28 62 chr6 135530884 135531122 -13985915 - RLTR15 LTR ERVK -65 294 59 6 1619 2966 83 5 17 chr6 135531122 135531527 -13985510 - MTB LTR MaLR 0 400 1 6 1619 523 289 28 62 chr6 135531527 135531576 -13985461 - RLTR15 LTR ERVK -301 58 17 6 1619 245 169 17 0 chr6 135531577 135531636 -13985401 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1619 482 317 126 58 chr6 135532006 135532330 -13984707 + MLT1C LTR MaLR 3 359 -108 6 1619 307 21 42 21 chr6 135532330 135532378 -13984659 + (TTTTG)n Simple_repeat Simple_repeat 4 52 0 6 1619 482 317 126 58 chr6 135532378 135532488 -13984549 + MLT1C LTR MaLR 360 467 0 6 1619 333 162 0 0 chr6 135534318 135534386 -13982651 + (CATA)n Simple_repeat Simple_repeat 4 71 0 6 1619 304 301 61 17 chr6 135534386 135534501 -13982536 - RMER12 LTR ERVK -467 855 736 6 1619 4113 229 47 24 chr6 135534519 135535840 -13981197 + RMER1A Other Other 1 1026 -4 7 1619 387 0 0 0 chr6 135536181 135536224 -13980813 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1619 589 314 94 31 chr6 135536279 135536535 -13980502 - B4A SINE B4 -20 272 1 7 1619 5239 139 18 7 chr6 135536536 135538146 -13978891 - Lx3C LINE L1 -1 6975 5098 7 1619 2285 86 38 3 chr6 135538799 135539113 -13977924 + ORR1A2 LTR MaLR 1 325 -2 7 1619 282 333 39 0 chr6 135539305 135539383 -13977654 + B4A SINE B4 43 123 -169 7 1619 773 277 148 28 chr6 135540076 135540433 -13976604 + L1ME4a LINE L1 5620 6019 -105 7 1619 210 162 0 0 chr6 135540784 135540821 -13976216 + T-rich Low_complexity Low_complexity 3 39 0 7 1619 624 311 42 38 chr6 135540864 135541152 -13975885 - B4A SINE B4 -2 290 2 7 1619 223 325 8 42 chr6 135541618 135541737 -13975300 + CT-rich Low_complexity Low_complexity 6 120 0 7 1619 479 286 87 83 chr6 135542216 135542468 -13974569 - RMER15 LTR ERVL -24 551 299 8 1619 325 323 73 47 chr6 135543461 135543695 -13973342 + MIR SINE MIR 9 248 -14 8 1619 638 356 70 24 chr6 135544234 135544648 -13972389 + MLT1E3 LTR MaLR 2 434 -190 8 1619 774 289 33 14 chr6 135545325 135545539 -13971498 + B4 SINE B4 3 220 -72 8 1619 1110 73 0 0 chr6 135545559 135545696 -13971341 + B1_Mm SINE Alu 2 138 -9 8 1619 621 0 0 0 chr6 135545842 135545911 -13971126 + (TA)n Simple_repeat Simple_repeat 1 69 0 8 1619 366 173 19 9 chr6 135545911 135546016 -13971021 + GA-rich Low_complexity Low_complexity 1 106 0 8 1619 517 254 156 17 chr6 135546431 135546721 -13970316 + ORR1E LTR MaLR 23 379 0 8 1619 977 279 22 118 chr6 135546728 135547143 -13969894 - MTE2b LTR MaLR -4 375 1 8 1619 2369 295 77 66 chr6 135547151 135547630 -13969407 - MTE2b-int LTR MaLR -8 1572 864 8 1619 600 53 0 0 chr6 135547630 135547706 -13969331 + (TATG)n Simple_repeat Simple_repeat 3 78 0 8 1619 2369 285 89 70 chr6 135547706 135548453 -13968584 - MTE2b-int LTR MaLR -595 985 205 8 1619 1384 197 153 6 chr6 135548453 135548806 -13968231 + MTC LTR MaLR 2 406 -15 9 1619 1200 54 7 0 chr6 135548821 135548968 -13968069 - B1_Mus1 SINE Alu 0 148 1 9 1619 679 311 20 41 chr6 135548972 135549217 -13967820 - MTE2b-int LTR MaLR -1333 247 8 8 1619 1153 227 98 98 chr6 135549254 135549630 -13967407 - MTE2b LTR MaLR -1 378 3 8 1619 21 0 0 0 chr6 135550210 135550231 -13966806 + AT_rich Low_complexity Low_complexity 1 21 0 9 1619 263 267 99 54 chr6 135550562 135550673 -13966364 + ID_B1 SINE B4 76 191 -33 9 1619 453 99 30 76 chr6 135550969 135551100 -13965937 + (TG)n Simple_repeat Simple_repeat 2 126 0 9 1619 225 280 76 6 chr6 135551102 135551260 -13965777 + (TATATG)n Simple_repeat Simple_repeat 4 172 0 9 1619 387 187 42 12 chr6 135551265 135551433 -13965604 + (TG)n Simple_repeat Simple_repeat 2 174 0 9 1619 293 283 188 43 chr6 135551465 135551720 -13965317 - B4A SINE B4 0 292 1 9 1619 1059 290 95 32 chr6 135551894 135552418 -13964619 - L1M3 LINE L1 -917 5223 4667 9 1619 643 280 86 72 chr6 135552418 135552551 -13964486 - MTE2a LTR MaLR -2 417 243 9 1619 216 0 0 0 chr6 135552551 135552575 -13964462 + (CACAT)n Simple_repeat Simple_repeat 3 26 0 1 1619 643 301 81 61 chr6 135552575 135552825 -13964212 - MTE2a LTR MaLR -134 285 18 9 1619 723 235 107 18 chr6 135552842 135553165 -13963872 - L1M3 LINE L1 -1467 4676 4327 9 1619 672 261 104 5 chr6 135553165 135553358 -13963679 + B3 SINE B2 5 216 0 1 1619 1006 271 10 57 chr6 135553380 135553764 -13963273 - L1M3 LINE L1 -1830 4310 3945 9 1619 489 313 106 18 chr6 135553771 135554100 -13962937 - L1MC4 LINE L1 -989 7053 6696 1 1619 226 291 144 8 chr6 135554817 135554935 -13962102 - L1ME2 LINE L1 -124 6040 5907 1 1619 513 32 0 0 chr6 135555566 135555629 -13961408 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1619 477 0 0 0 chr6 135555730 135555783 -13961254 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1619 1221 54 0 0 chr6 135555793 135555940 -13961097 - B1_Mus1 SINE Alu -1 147 1 1 1619 3417 23 13 5 chr6 135558699 135559092 -13957945 - MTA_Mm LTR MaLR 0 396 1 1 1619 279 0 0 0 chr6 135559269 135559300 -13957737 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1619 702 0 0 0 chr6 135559300 135559377 -13957660 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 1619 405 328 0 8 chr6 135559382 135559511 -13957526 - B1F SINE Alu -21 128 1 1 1619 404 195 13 13 chr6 135560036 135560114 -13956923 + ID4 SINE ID 3 80 -3 1 1619 197 200 105 53 chr6 135560656 135560751 -13956286 + MIRc SINE MIR 167 266 -2 1 1619 589 294 6 24 chr6 135561155 135561322 -13955715 - RSINE1 SINE B4 0 165 2 1 1619 257 181 0 27 chr6 135561396 135561470 -13955567 + Lx9 LINE L1 6887 6958 -686 1 1619 300 53 0 0 chr6 135561475 135561513 -13955524 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1619 3095 70 19 2 chr6 135561520 135561936 -13955101 + Lx3_Mus LINE L1 6580 7002 -7 1 1619 342 311 114 0 chr6 135562061 135562193 -13954844 - B1F2 SINE Alu -1 148 2 1 1619 548 52 0 0 chr6 135562203 135562280 -13954757 - B1_Mus2 SINE Alu 0 147 71 1 1619 375 236 100 53 chr6 135563448 135563618 -13953419 + MLT1C LTR MaLR 3 180 -287 1 1619 360 133 0 0 chr6 135563682 135563742 -13953295 + (GAAA)n Simple_repeat Simple_repeat 3 62 0 1 1619 309 305 160 13 chr6 135563793 135563949 -13953088 + MLT1C LTR MaLR 248 426 -41 1 1619 183 146 0 0 chr6 135565488 135565529 -13951508 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 1 1619 218 290 0 16 chr6 135565610 135565673 -13951364 - RSINE1 SINE B4 -102 63 2 1 1619 414 354 51 25 chr6 135566387 135566584 -13950453 - MTEa LTR MaLR -157 222 21 1 1619 887 208 140 98 chr6 135566573 135566979 -13950058 + RLTR23 LTR ERV1 8 430 0 1 1619 1220 240 68 65 chr6 135567355 135567738 -13949299 + ORR1C2 LTR MaLR 1 384 0 1 1619 2574 109 65 5 chr6 135567797 135568194 -13948843 - Lx3C LINE L1 -2 6974 6554 1 1619 410 294 85 24 chr6 135568431 135568595 -13948442 - MLT1D LTR MaLR -9 496 323 1 1619 10028 48 1 0 chr6 135568634 135570560 -13946477 - L1Md_F2 LINE L1 0 6582 4656 1 1619 750 227 15 80 chr6 135570609 135570810 -13946227 + B2_Mm2 SINE B2 5 192 -3 1 1619 243 250 29 0 chr6 135571256 135571324 -13945713 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1619 627 351 96 22 chr6 135571397 135571991 -13945046 + L1M5 LINE L1 2223 2860 -3286 1 1619 7856 76 8 6 chr6 135572556 135574098 -13942939 + L1_Mus1 LINE L1 5016 6566 -1 1 1619 1099 187 33 23 chr6 135574156 135574370 -13942667 + B3 SINE B2 1 216 0 1 1619 269 329 104 21 chr6 135574543 135574869 -13942168 + L1M5 LINE L1 3369 3721 -2425 1 1619 379 301 94 28 chr6 135574901 135575219 -13941818 + L1M5 LINE L1 3941 4279 -1867 1 1619 650 215 67 7 chr6 135575602 135575752 -13941285 - RSINE1 SINE B4 -4 161 3 1 1619 242 321 21 56 chr6 135575843 135575985 -13941052 + L1M3 LINE L1 4884 5020 -1120 1 1619 384 254 0 0 chr6 135576113 135576184 -13940853 + ID4_ SINE ID 2 72 -11 1 1619 477 0 0 0 chr6 135576214 135576267 -13940770 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 1 1619 969 34 0 0 chr6 135576267 135576383 -13940654 + (TTC)n Simple_repeat Simple_repeat 2 118 0 1 1619 917 120 53 0 chr6 135576385 135576518 -13940519 - B1_Mus1 SINE Alu -6 142 3 1 1619 713 272 36 40 chr6 135577489 135577711 -13939326 + ID_B1 SINE B4 3 223 -1 1 1619 198 281 0 0 chr6 135578142 135578199 -13938838 + MIRc SINE MIR 94 150 -118 1 1619 327 247 0 0 chr6 135578557 135578646 -13938391 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 1 1619 216 219 0 0 chr6 135579209 135579250 -13937787 + A-rich Low_complexity Low_complexity 1 41 0 1 1619 314 268 0 0 chr6 135579819 135579901 -13937136 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1619 187 281 62 15 chr6 135580575 135580640 -13936397 + MIRm SINE MIR 124 191 -85 1 1619 4549 130 14 16 chr6 135580654 135581411 -13935626 - RMER6A LTR ERVK 0 756 1 1 1619 194 237 38 38 chr6 135581785 135581864 -13935173 - L2a LINE L2 -4 3422 3344 1 1619 419 261 0 0 chr6 135582280 135582368 -13934669 - B1F1 SINE Alu -22 127 40 1 1619 522 0 0 0 chr6 135582793 135582851 -13934186 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1619 359 188 0 0 chr6 135583611 135583680 -13933357 - ID_B1 SINE B4 -9 215 147 1 1619 265 256 44 110 chr6 135583680 135583739 -13933298 - B1F SINE Alu -1 134 22 1 1619 770 230 55 78 chr6 135583977 135584322 -13932715 - Lx7 LINE L1 0 7696 7360 1 1619 373 169 0 24 chr6 135584323 135584408 -13932629 + GA-rich Low_complexity Low_complexity 2 84 0 1 1619 3288 182 92 50 chr6 135584408 135584447 -13932590 - Lx7 LINE L1 -342 7354 7326 1 1619 1093 81 0 0 chr6 135584447 135584583 -13932454 + B1_Mus1 SINE Alu 2 137 -11 1 1619 629 11 22 22 chr6 135584583 135584675 -13932362 + (CAAAA)n Simple_repeat Simple_repeat 2 93 0 1 1619 3288 182 92 50 chr6 135584675 135585388 -13931649 - Lx7 LINE L1 -371 7325 6571 1 1619 221 57 0 28 chr6 135586154 135586190 -13930847 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 1 1619 1215 54 0 0 chr6 135586190 135586337 -13930700 - B1_Mm SINE Alu 0 147 1 1 1619 4070 189 51 31 chr6 135587145 135588191 -13928846 + Lx4B LINE L1 5907 6997 -3 1 1619 211 245 0 0 chr6 135588514 135588563 -13928474 + L2b LINE L2 3031 3079 -296 1 1619 411 98 0 0 chr6 135588787 135588848 -13928189 + (CCA)n Simple_repeat Simple_repeat 3 63 0 1 1619 253 315 165 6 chr6 135589178 135589360 -13927677 - MIRb SINE MIR -29 239 29 1 1619 401 286 7 27 chr6 135589515 135589665 -13927372 + PB1D10 SINE Alu 9 149 0 1 1619 1902 81 66 7 chr6 135590651 135590939 -13926098 + ORR1A2 LTR MaLR 1 305 -22 1 1619 201 74 0 0 chr6 135590939 135590966 -13926071 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1619 3725 193 57 31 chr6 135590997 135591383 -13925654 + Lx6 LINE L1 6705 7111 -349 1 1619 405 109 0 0 chr6 135591383 135591447 -13925590 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1619 3725 193 57 31 chr6 135591447 135591797 -13925240 + Lx6 LINE L1 7112 7459 -1 1 1619 271 216 40 0 chr6 135591860 135591934 -13925103 + MER57E1 LTR ERV1 84 160 -212 1 1619 339 269 0 25 chr6 135591984 135592064 -13924973 - ID4 SINE ID -4 79 2 1 1619 244 331 25 17 chr6 135592080 135592213 -13924824 - B1F SINE Alu -9 140 7 1 1619 980 131 132 83 chr6 135593667 135593909 -13923128 - RLTR22_Mur LTR ERVK -5 1843 1590 1 1619 4228 145 11 26 chr6 135594087 135594899 -13922138 - RLTR22_Mur LTR ERVK -1048 800 1 1 1619 671 260 49 101 chr6 135595172 135595346 -13921691 - RLTR33 LTR ERVK 0 678 505 1 1619 3239 39 31 0 chr6 135595346 135595730 -13921307 - MTA_Mm LTR MaLR 0 396 1 1 1619 671 260 49 101 chr6 135595730 135595842 -13921195 - RLTR33 LTR ERVK -174 504 407 1 1619 798 244 29 5 chr6 135596266 135596472 -13920565 + B3 SINE B2 1 211 -5 1 1619 200 73 73 0 chr6 135596552 135596593 -13920444 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1619 319 246 108 13 chr6 135596946 135597126 -13919911 - L1M4b LINE L1 -3746 3588 3418 1 1619 394 288 87 5 chr6 135597193 135597399 -13919638 - L1MA5 LINE L1 -22 6278 6056 1 1619 22 0 0 0 chr6 135597417 135597439 -13919598 + AT_rich Low_complexity Low_complexity 1 22 0 1 1619 303 16 61 30 chr6 135597480 135597546 -13919491 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1619 371 304 117 41 chr6 135597703 135598166 -13918871 + L1M5 LINE L1 4383 4880 -1266 1 1619 305 275 31 71 chr6 135598199 135598297 -13918740 - PB1D7 SINE Alu -2 118 25 1 1619 731 274 112 17 chr6 135598321 135598562 -13918475 + ORR1D2 LTR MaLR 1 264 -106 1 1619 404 63 32 0 chr6 135598568 135598631 -13918406 + (CCCCCT)n Simple_repeat Simple_repeat 6 70 0 1 1619 368 232 10 10 chr6 135598631 135598727 -13918310 + ORR1D2 LTR MaLR 271 366 -4 1 1619 389 244 58 8 chr6 135598750 135598870 -13918167 + L1M5 LINE L1 4908 5033 -1113 1 1619 3014 187 18 45 chr6 135598896 135599513 -13917524 + Lx5 LINE L1 6451 7050 0 1 1619 558 193 50 0 chr6 135599683 135599802 -13917235 + B1F2 SINE Alu 25 149 0 1 1619 2528 93 46 11 chr6 135599931 135600302 -13916735 - Lx3C LINE L1 -312 6664 6281 1 1619 679 183 14 21 chr6 135600302 135600447 -13916590 + Lx3C LINE L1 6826 6969 -7 1 1619 393 307 29 73 chr6 135601264 135601401 -13915636 - B1F SINE Alu -18 131 1 1 1619 645 236 140 78 chr6 135601532 135601803 -13915234 + B4A SINE B4 3 290 -2 1 1619 471 101 0 0 chr6 135601807 135601886 -13915151 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 1619 5179 152 36 25 chr6 135602061 135602958 -13914079 + RMER13B LTR ERVK 2 908 0 1 1619 269 140 18 0 chr6 135603806 135603863 -13913174 + GA-rich Low_complexity Low_complexity 1 58 0 1 1619 251 68 68 0 chr6 135606089 135606133 -13910904 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1619 30 27 0 0 chr6 135606205 135606242 -13910795 + AT_rich Low_complexity Low_complexity 1 37 0 1 1619 574 301 113 58 chr6 135606412 135606984 -13910053 + L1MC4 LINE L1 6987 7583 -459 1 1619 297 0 0 0 chr6 135606984 135607017 -13910020 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1619 574 301 113 58 chr6 135607017 135607100 -13909937 + L1MC4 LINE L1 7584 7678 -364 1 1619 405 375 52 0 chr6 135607397 135607533 -13909504 + RSINE1 SINE B4 19 161 -4 1 1619 489 17 0 0 chr6 135608080 135608138 -13908899 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1619 512 292 140 9 chr6 135608168 135608389 -13908648 - B4A SINE B4 -38 254 5 1 1619 721 301 42 21 chr6 135608380 135608621 -13908416 - B4A SINE B4 -46 246 1 1 1619 328 266 150 19 chr6 135608645 135608878 -13908159 - MIRb SINE MIR 0 262 5 2 1619 182 241 19 0 chr6 135609936 135609990 -13907047 + MIRc SINE MIR 85 139 -129 2 1619 780 302 92 4 chr6 135610584 135610901 -13906136 - ORR1E LTR MaLR 0 379 8 2 1619 982 304 22 19 chr6 135611747 135612015 -13905022 - B4A SINE B4 -14 278 10 2 1619 341 249 164 86 chr6 135612053 135612371 -13904666 - ORR1E LTR MaLR -7 352 6 2 1619 1112 211 5 5 chr6 135613298 135613512 -13903525 + B3 SINE B2 3 216 0 2 1619 245 316 13 0 chr6 135613812 135613891 -13903146 - ID2 SINE ID -2 81 2 2 1619 3137 281 90 28 chr6 135613930 135614566 -13902471 - Lx8 LINE L1 -9 7464 6786 2 1619 423 0 0 0 chr6 135614566 135614613 -13902424 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1619 3137 281 90 28 chr6 135614613 135615140 -13901897 - Lx8 LINE L1 -688 6785 6230 2 1619 1607 57 0 0 chr6 135615465 135615677 -13901360 - MTB LTR MaLR -188 212 1 2 1619 828 245 85 114 chr6 135615751 135616243 -13900794 - RLTR12B LTR ERVK -42 486 9 2 1619 13226 172 73 19 chr6 135616251 135616805 -13900232 + L1_Mur3 LINE L1 2246 2792 -3088 2 1619 204 97 0 0 chr6 135616805 135616836 -13900201 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2 1619 13226 172 73 19 chr6 135616836 135617447 -13899590 + L1_Mur3 LINE L1 2793 3471 -2409 2 1619 354 45 0 0 chr6 135617447 135617491 -13899546 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 1619 13226 172 73 19 chr6 135617491 135619089 -13897948 + L1_Mur3 LINE L1 3472 5158 -722 2 1619 1050 232 127 21 chr6 135619142 135619472 -13897565 + MTEa LTR MaLR 10 374 -5 2 1619 243 250 17 51 chr6 135619659 135619766 -13897271 - MIRb SINE MIR -51 217 107 2 1619 261 119 0 0 chr6 135621580 135621622 -13895415 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 2 1619 686 294 0 0 chr6 135622161 135622314 -13894723 - B3A SINE B2 -24 174 22 2 1619 558 29 0 0 chr6 135623211 135623279 -13893758 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 1619 1070 205 15 24 chr6 135623441 135623646 -13893391 + B3 SINE B2 1 203 -13 2 1619 816 11 0 0 chr6 135623646 135623739 -13893298 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 2 1619 28 0 0 0 chr6 135623858 135623886 -13893151 + AT_rich Low_complexity Low_complexity 1 28 0 2 1619 567 0 0 0 chr6 135623891 135623954 -13893083 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1619 562 308 8 0 chr6 135623956 135624089 -13892948 - RSINE1 SINE B4 -29 136 3 2 1619 419 310 81 12 chr6 135624230 135624390 -13892647 - Kanga1 DNA Tc2 -295 1450 1280 2 1619 345 284 83 42 chr6 135624460 135624677 -13892360 - Kanga1 DNA Tc2 -1317 428 203 2 1619 2227 169 86 7 chr6 135625344 135625749 -13891288 - Lx4B LINE L1 -277 6781 6345 2 1619 3055 101 0 2 chr6 135625743 135626170 -13890867 + Lx5 LINE L1 5587 6012 -1038 2 1619 437 306 0 9 chr6 135626181 135626290 -13890747 - PB1D7 SINE Alu -8 112 5 2 1619 2073 64 30 20 chr6 135626888 135627192 -13889845 - IAPLTR2b LTR ERVK -20 307 1 2 1619 329 167 28 0 chr6 135627308 135627380 -13889657 + GA-rich Low_complexity Low_complexity 3 76 0 2 1619 1242 100 0 0 chr6 135627381 135627561 -13889476 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1619 340 212 242 52 chr6 135627562 135627756 -13889281 + L1MA4 LINE L1 5598 5828 -472 2 1619 382 262 92 123 chr6 135627765 135628057 -13888980 + B4A SINE B4 10 292 0 2 1619 216 0 0 0 chr6 135628071 135628095 -13888942 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 1619 393 141 0 0 chr6 135628095 135628166 -13888871 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1619 312 243 27 0 chr6 135628452 135628526 -13888511 + MTEa LTR MaLR 289 364 -15 2 1619 239 180 60 0 chr6 135628619 135628669 -13888368 + MTD LTR MaLR 2 54 -325 2 1619 446 280 85 6 chr6 135628834 135629010 -13888027 - MLT1F1 LTR MaLR -170 399 210 2 1619 438 53 0 0 chr6 135629022 135629079 -13887958 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1619 493 204 0 15 chr6 135629103 135629237 -13887800 + (TA)n Simple_repeat Simple_repeat 1 132 0 2 1619 1242 100 0 0 chr6 135629253 135629433 -13887604 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 2 1619 197 355 115 43 chr6 135629792 135630001 -13887036 + MIR SINE MIR 38 261 -1 2 1619 959 249 59 53 chr6 135630230 135630587 -13886450 + ORR1E LTR MaLR 1 359 0 2 1619 589 271 18 106 chr6 135630594 135630814 -13886223 - MTEa LTR MaLR -158 221 22 2 1619 7296 49 12 1 chr6 135630814 135631697 -13885340 + RLTR13B1 LTR ERVK 1 893 0 2 1619 1256 214 133 6 chr6 135631851 135632213 -13884824 + MTD LTR MaLR 12 419 0 2 1619 329 22 44 0 chr6 135634546 135634591 -13882446 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 1619 562 263 134 21 chr6 135634653 135634944 -13882093 - L1_Mur3 LINE L1 -197 5683 5360 2 1619 851 254 27 109 chr6 135636458 135636825 -13880212 + ORR1D1 LTR MaLR 31 367 -7 2 1619 354 321 28 28 chr6 135638146 135638290 -13878747 + MIR SINE MIR 80 223 -39 2 1619 512 275 136 84 chr6 135638805 135639155 -13877882 + MTEb LTR MaLR 1 376 -3 2 1619 1060 159 196 4 chr6 135639226 135639497 -13877540 + Lx9 LINE L1 7316 7638 -6 2 1619 353 256 86 97 chr6 135639527 135639664 -13877373 + B3A SINE B2 1 153 -45 2 1619 315 0 0 0 chr6 135639664 135639699 -13877338 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1619 288 0 0 0 chr6 135639699 135639730 -13877307 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 1619 269 256 86 97 chr6 135639730 135639777 -13877260 + B2_Mm2 SINE B2 143 183 -12 2 1619 1014 214 59 80 chr6 135640366 135640655 -13876382 + B4 SINE B4 1 283 -9 2 1619 554 328 5 22 chr6 135641649 135641833 -13875204 + B3A SINE B2 2 182 -16 2 1619 300 27 0 0 chr6 135641861 135641898 -13875139 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1619 1033 271 107 45 chr6 135642149 135643032 -13874005 - L1MB2 LINE L1 -3 6180 5189 2 1619 489 245 24 36 chr6 135643116 135643281 -13873756 - Lx7 LINE L1 0 7696 7534 2 1619 2728 122 138 91 chr6 135643282 135643941 -13873096 + RMER6C LTR ERVK 1 690 0 2 1619 2034 219 85 65 chr6 135643941 135644528 -13872509 - Lx7 LINE L1 -196 7500 6902 2 1619 361 200 86 32 chr6 135644532 135644625 -13872412 - L1MC1 LINE L1 -15 6318 6221 2 1619 423 0 0 0 chr6 135644744 135644791 -13872246 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1619 1025 278 55 40 chr6 135644791 135645188 -13871849 - L1M4c LINE L1 -4807 1577 1175 2 1619 2839 234 69 40 chr6 135645285 135646300 -13870737 - Lx5 LINE L1 -396 6654 5680 2 1619 1522 231 71 24 chr6 135646301 135646682 -13870355 + Lx6 LINE L1 7054 7452 -8 2 1619 909 239 119 90 chr6 135646900 135647378 -13869659 - L1M4c LINE L1 -5469 915 424 2 1619 536 299 14 0 chr6 135647446 135647590 -13869447 - B3 SINE B2 -65 151 6 2 1619 391 338 28 71 chr6 135647608 135647863 -13869174 - L1M4c LINE L1 -6070 314 71 2 1619 1135 145 0 24 chr6 135650371 135650668 -13866369 + RMER17C LTR ERVK 1 410 0 2 1619 298 299 0 20 chr6 135651251 135651350 -13865687 - L2a LINE L2 -2 3424 3328 2 1619 284 344 28 11 chr6 135651367 135651580 -13865457 + MIRb SINE MIR 41 260 -8 2 1619 761 156 0 6 chr6 135651711 135651879 -13865158 + (TG)n Simple_repeat Simple_repeat 1 167 0 2 1619 272 201 19 16 chr6 135652603 135652680 -13864357 - MTE2b LTR MaLR -16 363 269 2 1619 24 0 0 0 chr6 135652837 135652861 -13864176 + AT_rich Low_complexity Low_complexity 1 24 0 2 1619 540 81 0 0 chr6 135654648 135654722 -13862315 + (CCA)n Simple_repeat Simple_repeat 2 75 0 2 1619 342 0 0 0 chr6 135655670 135655708 -13861329 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1619 192 97 0 0 chr6 135655952 135655983 -13861054 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2 1619 305 262 0 38 chr6 135656178 135656310 -13860727 - ID4_ SINE ID -22 130 8 2 1619 745 157 0 80 chr6 135656961 135657132 -13859905 + ORR1C2 LTR MaLR 1 143 -241 2 1619 268 159 0 0 chr6 135657136 135657199 -13859838 + ORR1B2 LTR MaLR 55 117 -250 2 1619 250 203 0 26 chr6 135657200 135657276 -13859761 + ORR1B2 LTR MaLR 44 117 -250 2 1619 1024 155 172 1 chr6 135657318 135657575 -13859462 + ORR1C2 LTR MaLR 45 358 -26 2 1619 405 0 0 0 chr6 135657589 135657634 -13859403 + (TTAG)n Simple_repeat Simple_repeat 1 45 0 2 1619 302 291 19 10 chr6 135657653 135657757 -13859280 - RSINE1 SINE B4 -58 107 3 2 1619 419 203 0 16 chr6 135657950 135658075 -13858962 + (TATG)n Simple_repeat Simple_repeat 2 124 0 2 1619 427 264 6 117 chr6 135658076 135658256 -13858781 - RSINE1 SINE B4 0 165 6 2 1619 186 280 0 20 chr6 135658407 135658458 -13858579 + MER5B DNA MER1_type 11 60 -118 2 1620 219 240 0 0 chr6 135659932 135659982 -13857055 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1620 811 284 23 27 chr6 135660304 135660565 -13856472 + MER2 DNA MER2_type 86 345 0 2 1620 627 228 23 58 chr6 135660616 135660788 -13856249 + ORR1E LTR MaLR 6 171 -188 2 1620 534 43 0 0 chr6 135661274 135661343 -13855694 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 1620 305 322 31 62 chr6 135662178 135662370 -13854667 + L1MC5 LINE L1 7338 7523 -438 2 1620 579 261 6 92 chr6 135662665 135662838 -13854199 - RSINE1 SINE B4 -4 161 4 2 1620 236 279 9 46 chr6 135662879 135662988 -13854049 + L1MC5 LINE L1 7826 7930 -31 2 1620 180 125 0 0 chr6 135664032 135664064 -13852973 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1620 302 0 26 0 chr6 135664978 135665016 -13852021 + (CCCCCT)n Simple_repeat Simple_repeat 6 44 0 2 1620 306 194 0 0 chr6 135665446 135665508 -13851529 + B1F SINE Alu 1 62 -87 2 1620 301 269 163 14 chr6 135665878 135666025 -13851012 + L2 LINE L2 466 634 -2785 2 1620 475 269 141 19 chr6 135666109 135666371 -13850666 + L2 LINE L2 1476 1769 -1650 2 1620 311 0 0 25 chr6 135666390 135666430 -13850607 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1620 30 0 0 0 chr6 135666833 135666863 -13850174 + AT_rich Low_complexity Low_complexity 1 30 0 2 1620 723 165 112 19 chr6 135668668 135668829 -13848208 - B2_Mm2 SINE B2 -19 176 1 2 1620 300 27 0 0 chr6 135671343 135671380 -13845657 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1620 30 0 0 0 chr6 135677669 135677699 -13839338 + AT_rich Low_complexity Low_complexity 1 30 0 2 1620 258 105 0 0 chr6 135679805 135679843 -13837194 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1620 639 88 0 0 chr6 135680525 135680616 -13836421 + (CA)n Simple_repeat Simple_repeat 2 92 0 3 1620 24 32 0 0 chr6 135685682 135685713 -13831324 + AT_rich Low_complexity Low_complexity 1 31 0 3 1620 230 330 8 25 chr6 135686542 135686660 -13830377 + GA-rich Low_complexity Low_complexity 4 119 0 3 1620 660 26 0 0 chr6 135686890 135686968 -13830069 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 1620 24 0 0 0 chr6 135686987 135687011 -13830026 + AT_rich Low_complexity Low_complexity 1 24 0 3 1620 732 344 60 62 chr6 135688394 135688846 -13828191 + MLT1C LTR MaLR 8 458 -9 3 1620 270 0 0 0 chr6 135690015 135690045 -13826992 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1620 219 125 0 0 chr6 135691103 135691143 -13825894 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1620 1260 215 104 16 chr6 135692277 135692641 -13824396 + MTD LTR MaLR 24 419 0 3 1620 408 311 64 21 chr6 135694218 135694405 -13822632 + L1MD LINE L1 5040 5234 -912 3 1620 286 297 14 0 chr6 135696410 135696484 -13820553 + MLT1H1 LTR MaLR 1 75 -480 3 1620 421 82 0 121 chr6 135697505 135697588 -13819449 + URR1B DNA MER1_type 149 221 -4 3 1620 235 266 76 0 chr6 135697628 135697707 -13819330 + MIR SINE MIR 58 142 -120 3 1620 1202 223 74 31 chr6 135698035 135698387 -13818650 + ORR1D2 LTR MaLR 2 368 -2 3 1620 207 0 0 0 chr6 135698546 135698569 -13818468 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1620 252 0 0 0 chr6 135699050 135699078 -13817959 + (G)n Simple_repeat Simple_repeat 1 28 0 3 1620 284 264 115 39 chr6 135699279 135699409 -13817628 - L1ME1 LINE L1 -103 6076 5937 3 1620 279 0 0 0 chr6 135699537 135699568 -13817469 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1620 458 337 62 66 chr6 135699869 135700158 -13816879 + B4A SINE B4 1 288 -4 3 1620 438 20 0 0 chr6 135700162 135700213 -13816824 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1620 855 29 0 0 chr6 135700525 135700627 -13816410 + (TC)n Simple_repeat Simple_repeat 1 102 0 3 1620 352 37 0 36 chr6 135700627 135700682 -13816355 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1620 181 281 18 0 chr6 135701303 135701360 -13815677 - MIR SINE MIR -57 205 148 3 1620 207 295 16 0 chr6 135702299 135702360 -13814677 + L2a LINE L2 3324 3385 -41 3 1620 465 133 0 0 chr6 135704776 135704851 -13812186 + (TTCA)n Simple_repeat Simple_repeat 1 75 0 3 1620 322 250 0 0 chr6 135705036 135705100 -13811937 - ID4_ SINE ID -16 67 4 3 1620 210 250 29 14 chr6 135705698 135705767 -13811270 + BC1_Mm scRNA scRNA 17 86 -66 3 1620 727 281 91 9 chr6 135706162 135706459 -13810578 - ORR1E LTR MaLR 0 379 25 3 1620 614 58 11 0 chr6 135706894 135706981 -13810056 + (GTTTG)n Simple_repeat Simple_repeat 2 89 0 3 1620 832 139 29 0 chr6 135706982 135707119 -13809918 - B1_Mur4 SINE Alu -5 145 5 3 1620 301 264 31 52 chr6 135707186 135707282 -13809755 - B1_Mus1 SINE Alu -20 128 35 3 1620 1330 157 46 0 chr6 135707860 135708076 -13808961 - URR1A DNA MER1_type 0 226 1 3 1620 315 260 0 0 chr6 135708117 135708194 -13808843 + MTEb LTR MaLR 207 283 -96 3 1620 263 275 29 118 chr6 135709525 135709661 -13807376 + MTEb LTR MaLR 1 124 -255 3 1620 204 208 0 0 chr6 135711154 135711202 -13805835 + C-rich Low_complexity Low_complexity 1 48 0 3 1620 717 287 130 0 chr6 135712605 135712821 -13804216 - B4 SINE B4 -15 277 34 3 1620 198 236 0 0 chr6 135714134 135714189 -13802848 + CT-rich Low_complexity Low_complexity 3 57 0 3 1620 531 0 0 0 chr6 135714335 135714394 -13802643 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1620 315 0 0 0 chr6 135715722 135715757 -13801280 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1620 455 181 0 0 chr6 135715892 135715975 -13801062 + ID_B1 SINE B4 105 187 -37 3 1620 657 69 0 0 chr6 135715997 135716084 -13800953 + (TAAG)n Simple_repeat Simple_repeat 1 87 0 3 1620 204 40 0 0 chr6 135716108 135716133 -13800904 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 1620 237 357 118 8 chr6 135716555 135716682 -13800355 - MLT1A1 LTR MaLR 0 408 268 3 1620 269 196 52 0 chr6 135717721 135717785 -13799252 + MIRc SINE MIR 93 159 -103 3 1620 707 313 55 66 chr6 135718036 135718399 -13798638 + ORR1E LTR MaLR 1 359 0 3 1620 395 83 17 0 chr6 135719656 135719716 -13797321 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 3 1620 351 0 0 0 chr6 135721110 135721149 -13795888 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1620 207 0 0 0 chr6 135725555 135725578 -13791459 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1620 697 209 43 0 chr6 135725586 135725725 -13791312 + B1_Mus1 SINE Alu 4 148 0 3 1620 225 0 0 0 chr6 135726505 135726530 -13790507 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 3 1620 241 315 155 32 chr6 135726572 135726759 -13790278 - MIRc SINE MIR -17 251 42 3 1620 1717 202 39 47 chr6 135727918 135728303 -13788734 + ORR1C2 LTR MaLR 1 382 -2 3 1620 506 264 101 0 chr6 135728980 135729128 -13787909 - B4 SINE B4 -128 164 2 3 1620 1069 200 46 5 chr6 135730535 135730751 -13786286 - URR1B DNA MER1_type 0 225 1 3 1620 336 273 40 0 chr6 135731995 135732094 -13784943 - Tigger5 DNA MER2_type -1 2405 2303 3 1620 482 278 28 57 chr6 135732090 135732231 -13784806 - Tigger5 DNA MER2_type -2168 238 102 3 1620 558 29 0 0 chr6 135732231 135732299 -13784738 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1620 369 0 0 0 chr6 135732599 135732640 -13784397 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 3 1620 776 275 137 8 chr6 135732862 135733095 -13783942 + B4A SINE B4 26 288 -4 3 1620 397 378 54 40 chr6 135733430 135733780 -13783257 + L3 LINE CR1 3362 3716 -773 3 1620 243 329 0 12 chr6 135735409 135735489 -13781548 - ID4 SINE ID -4 79 1 3 1620 326 16 14 100 chr6 135736028 135736098 -13780939 + (CAAAA)n Simple_repeat Simple_repeat 3 66 0 3 1620 212 204 23 0 chr6 135737232 135737276 -13779761 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 3 1620 658 360 22 25 chr6 135737281 135737555 -13779482 - B4A SINE B4 0 292 20 3 1620 549 0 0 0 chr6 135737651 135737712 -13779325 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1620 693 66 0 0 chr6 135737763 135737854 -13779183 + (TTCC)n Simple_repeat Simple_repeat 4 94 0 3 1620 212 170 0 19 chr6 135738296 135738350 -13778687 + CT-rich Low_complexity Low_complexity 2 54 0 3 1620 594 335 61 25 chr6 135739956 135740235 -13776802 - B4A SINE B4 -3 289 1 3 1620 184 100 24 24 chr6 135740504 135740545 -13776492 + MIR SINE MIR 80 120 -142 3 1620 189 0 0 0 chr6 135740617 135740638 -13776399 + (CAA)n Simple_repeat Simple_repeat 2 22 0 3 1620 281 281 22 33 chr6 135741603 135741695 -13775342 + MIR SINE MIR 15 105 -157 3 1620 731 257 235 20 chr6 135742460 135742805 -13774232 + MTD LTR MaLR 1 419 0 3 1620 248 179 0 0 chr6 135743992 135744031 -13773006 + RSINE1 SINE B4 74 112 -53 3 1620 211 359 0 0 chr6 135744380 135744458 -13772579 + L2 LINE L2 2737 2814 -605 3 1620 346 358 22 14 chr6 135745053 135745192 -13771845 + MLT1H2 LTR MaLR 54 193 -296 3 1620 272 264 78 91 chr6 135745322 135745476 -13771561 + MLT1H2 LTR MaLR 382 533 -16 3 1620 846 336 15 0 chr6 135745549 135745817 -13771220 + B4 SINE B4 1 272 -20 3 1620 531 259 8 0 chr6 135747493 135747624 -13769413 + ORR1E LTR MaLR 4 135 -224 3 1620 527 279 70 97 chr6 135747655 135747996 -13769041 + ORR1E LTR MaLR 2 333 -37 3 1620 213 39 0 0 chr6 135749424 135749450 -13767587 + (CAT)n Simple_repeat Simple_repeat 1 26 0 3 1620 216 362 0 52 chr6 135749488 135749622 -13767415 + MER5A DNA MER1_type 30 156 -33 3 1620 335 301 50 121 chr6 135750672 135750970 -13766067 - MLT1J1 LTR MaLR -139 305 29 3 1620 241 81 54 0 chr6 135752083 135752114 -13764923 - L1Md_F2 LINE L1 -370 6212 6180 3 1620 3054 43 21 0 chr6 135752114 135752486 -13764551 + L1Md_F2 LINE L1 6195 6574 -8 3 1620 2041 144 17 3 chr6 135752977 135753331 -13763706 + RLTR15 LTR ERVK 1 359 0 3 1620 976 283 115 14 chr6 135753814 135754179 -13762858 + MTD LTR MaLR 18 419 0 3 1620 827 284 41 23 chr6 135754575 135754988 -13762049 + L1MA4 LINE L1 5587 6009 -1687 3 1620 1120 252 89 12 chr6 135758234 135758571 -13758466 - MTD LTR MaLR -39 380 18 3 1620 21 36 0 0 chr6 135759256 135759284 -13757753 + AT_rich Low_complexity Low_complexity 1 28 0 3 1620 223 284 2 41 chr6 135759425 135759555 -13757482 + MIRc SINE MIR 80 201 -7 3 1620 566 271 14 7 chr6 135759714 135759855 -13757182 + B1F SINE Alu 1 142 -7 3 1620 701 240 63 24 chr6 135760903 135761108 -13755929 + B3 SINE B2 2 214 -2 3 1620 1899 264 54 17 chr6 135761581 135762175 -13754862 - Lx6 LINE L1 -3 7457 6469 3 1620 979 260 66 19 chr6 135762164 135762529 -13754508 - Lx6 LINE L1 -687 6363 5961 3 1620 400 303 171 47 chr6 135762630 135762928 -13754109 + MLT1E1 LTR MaLR 314 648 -6 3 1620 200 354 8 25 chr6 135762930 135763049 -13753988 - MIRc SINE MIR -135 133 17 3 1620 213 268 18 0 chr6 135763227 135763283 -13753754 + G-rich Low_complexity Low_complexity 1 57 0 3 1620 532 314 56 101 chr6 135763325 135763701 -13753336 - ORR1E LTR MaLR 0 359 1 3 1620 237 246 103 17 chr6 135764894 135765010 -13752027 + MIRb SINE MIR 14 139 -129 3 1620 819 250 169 95 chr6 135765896 135766245 -13750792 + MTEb LTR MaLR 3 377 -2 3 1620 192 25 48 48 chr6 135767207 135767249 -13749788 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 3 1620 192 379 0 0 chr6 135767659 135767725 -13749312 + MIR SINE MIR 86 151 -111 3 1620 742 274 58 55 chr6 135767935 135768057 -13748980 - MER2 DNA MER2_type -16 329 215 3 1620 903 226 57 38 chr6 135768057 135768269 -13748768 - B3 SINE B2 0 216 1 3 1620 742 274 58 55 chr6 135768269 135768474 -13748563 - MER2 DNA MER2_type -131 214 1 3 1620 205 359 36 54 chr6 135768475 135768643 -13748394 - L2c LINE L2 -150 3237 3073 4 1620 409 260 92 30 chr6 135769250 135769381 -13747656 + B4 SINE B4 65 203 -89 4 1620 513 0 0 0 chr6 135769476 135769533 -13747504 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1620 626 65 11 0 chr6 135769742 135769834 -13747203 + (GA)n Simple_repeat Simple_repeat 1 93 0 4 1620 1082 286 17 30 chr6 135773742 135774038 -13742999 + B4 SINE B4 1 292 0 4 1620 345 282 0 71 chr6 135774579 135774705 -13742332 + PB1D10 SINE Alu 1 117 0 4 1620 683 217 59 7 chr6 135774709 135774862 -13742175 + RSINE1 SINE B4 5 165 0 4 1620 23 54 0 0 chr6 135775551 135775588 -13741449 + AT_rich Low_complexity Low_complexity 1 37 0 4 1620 567 0 0 0 chr6 135776246 135776309 -13740728 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 4 1620 926 83 0 0 chr6 135776309 135776442 -13740595 - B1_Mus1 SINE Alu -1 147 15 4 1620 415 199 68 103 chr6 135776314 135776460 -13740577 - B4A SINE B4 -71 221 81 4 1620 238 304 0 0 chr6 135776453 135776509 -13740528 - MLT1F1 LTR MaLR -64 616 561 4 1620 290 320 121 48 chr6 135776563 135776770 -13740267 - MLT1F1 LTR MaLR -233 336 115 4 1620 600 53 0 0 chr6 135777677 135777753 -13739284 + (TC)n Simple_repeat Simple_repeat 2 77 0 4 1620 202 119 0 67 chr6 135777828 135777873 -13739164 + T-rich Low_complexity Low_complexity 2 43 0 4 1620 245 325 127 6 chr6 135778340 135778498 -13738539 - MER102b DNA MER1_type -80 261 85 4 1620 253 262 7 137 chr6 135779159 135779305 -13737732 + L2a LINE L2 3263 3389 -37 4 1620 252 0 0 0 chr6 135780277 135780305 -13736732 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1620 489 312 0 0 chr6 135780305 135780430 -13736607 - ID_B1 SINE B4 -11 213 89 4 1620 475 261 14 40 chr6 135780626 135780774 -13736263 - MIR SINE MIR -11 251 108 4 1620 568 336 13 103 chr6 135780978 135781280 -13735757 - B4A SINE B4 -6 286 12 4 1620 450 0 0 0 chr6 135781999 135782049 -13734988 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1620 625 267 7 7 chr6 135782058 135782194 -13734843 - RSINE1 SINE B4 -20 145 10 4 1620 221 253 7 22 chr6 135785712 135785850 -13731187 + GA-rich Low_complexity Low_complexity 1 135 0 4 1620 581 306 49 16 chr6 135786027 135786273 -13730764 - L3b LINE CR1 -179 303 50 4 1620 522 0 0 0 chr6 135786725 135786783 -13730254 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1620 566 226 9 9 chr6 135787668 135787784 -13729253 - PB1D10 SINE Alu -1 116 1 4 1620 519 17 0 0 chr6 135788717 135788777 -13728260 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1620 229 364 70 32 chr6 135788847 135789003 -13728034 - L2a LINE L2 -1 3425 3264 4 1620 239 245 71 50 chr6 135789980 135790079 -13726958 - L2a LINE L2 -3 3423 3323 4 1621 227 301 24 12 chr6 135791271 135791355 -13725682 + ORR1E LTR MaLR 61 145 -214 4 1621 853 132 26 0 chr6 135791460 135791612 -13725425 - URR1A DNA MER1_type -1 225 70 4 1621 284 75 0 0 chr6 135791620 135791660 -13725377 - URR1A DNA MER1_type -117 109 70 4 1621 284 75 0 0 chr6 135791668 135791708 -13725329 - URR1A DNA MER1_type -117 109 70 4 1621 284 75 0 0 chr6 135791716 135791756 -13725281 - URR1A DNA MER1_type -117 109 70 4 1621 614 211 0 0 chr6 135791764 135791873 -13725164 - URR1A DNA MER1_type -117 109 1 4 1621 269 307 185 52 chr6 135792419 135792591 -13724446 - MIRm SINE MIR -9 253 59 4 1621 25 0 0 0 chr6 135793453 135793478 -13723559 + AT_rich Low_complexity Low_complexity 1 25 0 4 1621 811 264 0 16 chr6 135793488 135793673 -13723364 - B3A SINE B2 -15 183 2 4 1621 352 248 44 44 chr6 135793707 135793842 -13723195 + MIRb SINE MIR 134 268 0 4 1621 227 292 0 0 chr6 135794960 135795025 -13722012 - L3 LINE CR1 -284 4205 4141 4 1621 317 292 21 10 chr6 135795661 135795758 -13721279 + GA-rich Low_complexity Low_complexity 3 100 0 4 1621 337 273 62 8 chr6 135795835 135795964 -13721073 + MARNA DNA Mariner 371 506 -80 4 1621 247 250 0 0 chr6 135800148 135800208 -13716829 + L1_Rod LINE L1 5710 5769 -78 4 1621 852 67 0 0 chr6 135800485 135800605 -13716432 + (TC)n Simple_repeat Simple_repeat 1 120 0 4 1621 525 16 0 0 chr6 135800605 135800666 -13716371 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1621 532 304 47 6 chr6 135800693 135800865 -13716172 - B4A SINE B4 -29 263 85 4 1621 625 224 124 0 chr6 135800978 135801139 -13715898 - B3A SINE B2 -17 181 1 4 1621 1960 168 55 5 chr6 135802088 135802470 -13714567 + MTD LTR MaLR 5 405 -14 4 1621 365 301 80 0 chr6 135803863 135803976 -13713061 + RSINE1 SINE B4 3 124 -41 4 1621 678 91 0 0 chr6 135803994 135804093 -13712944 + (CA)n Simple_repeat Simple_repeat 2 100 0 4 1621 234 265 132 38 chr6 135805618 135805724 -13711313 - MIRb SINE MIR 0 268 153 4 1621 273 322 74 88 chr6 135806849 135807132 -13709905 - B4A SINE B4 -12 280 2 4 1621 595 156 16 0 chr6 135808198 135808320 -13708717 + (CA)n Simple_repeat Simple_repeat 1 124 0 4 1621 1033 26 0 0 chr6 135814738 135814855 -13702182 + L1Md_F2 LINE L1 5672 5788 -794 4 1621 7645 44 0 3 chr6 135814864 135815777 -13701260 + L1Md_F2 LINE L1 5672 6581 -1 4 1621 281 221 91 23 chr6 135816685 135816773 -13700264 + MLT1A1 LTR MaLR 303 396 -12 4 1621 298 316 0 0 chr6 135817069 135817167 -13699870 - PB1D10 SINE Alu -8 109 12 4 1621 216 337 0 48 chr6 135817083 135817186 -13699851 - ID_B1 SINE B4 -48 176 79 4 1621 453 183 24 0 chr6 135817383 135817465 -13699572 + ID_B1 SINE B4 110 193 -31 4 1621 1305 73 0 0 chr6 135817974 135818221 -13698816 + (TTC)n Simple_repeat Simple_repeat 1 247 0 4 1621 1086 56 0 0 chr6 135818225 135818367 -13698670 + (TTCCC)n Simple_repeat Simple_repeat 4 145 0 4 1621 315 193 17 46 chr6 135818600 135818716 -13698321 - Lx5 LINE L1 0 7058 6940 4 1621 757 191 7 0 chr6 135818731 135818872 -13698165 - B1_Mur1 SINE Alu -5 144 3 4 1621 241 254 15 0 chr6 135820812 135820879 -13696158 + GA-rich Low_complexity Low_complexity 2 69 0 4 1621 1112 208 158 16 chr6 135820915 135821238 -13695799 + MTD LTR MaLR 6 374 -45 4 1621 31 0 0 0 chr6 135821348 135821379 -13695658 + AT_rich Low_complexity Low_complexity 1 31 0 4 1621 249 33 0 0 chr6 135823733 135823763 -13693274 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1621 424 341 0 113 chr6 135824536 135824721 -13692316 + ID_B1 SINE B4 46 209 -15 4 1621 261 0 0 0 chr6 135824721 135824750 -13692287 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1621 572 257 156 16 chr6 135824758 135824944 -13692093 + B3 SINE B2 5 216 0 4 1621 603 0 0 0 chr6 135824966 135825033 -13692004 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 1621 295 264 27 27 chr6 135825068 135825142 -13691895 - ID SINE ID -150 74 1 4 1621 441 0 0 0 chr6 135826438 135826487 -13690550 + (T)n Simple_repeat Simple_repeat 1 49 0 4 1621 619 297 34 17 chr6 135826790 135827065 -13689972 + L1MA4 LINE L1 5659 5934 -366 4 1621 216 86 0 0 chr6 135827301 135827336 -13689701 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1621 216 293 47 47 chr6 135827440 135827526 -13689511 - MIR SINE MIR -91 171 86 4 1621 730 256 6 0 chr6 135827835 135828003 -13689034 + L1MD2 LINE L1 25 193 -6354 4 1621 398 286 73 68 chr6 135828007 135828375 -13688662 + L1MD2 LINE L1 1033 1402 -5238 4 1621 1188 59 135 6 chr6 135828499 135828669 -13688368 - B2_Mm1t SINE B2 0 193 2 4 1621 653 303 129 3 chr6 135828746 135829041 -13687996 + L1ME2 LINE L1 5530 5861 -303 4 1621 271 245 0 0 chr6 135829057 135829110 -13687927 - B4 SINE B4 -18 274 222 4 1621 180 0 0 0 chr6 135829245 135829265 -13687772 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 4 1621 1365 108 131 48 chr6 135829265 135829517 -13687520 - Lx LINE L1 -12 6642 6370 4 1621 5598 93 17 8 chr6 135829609 135830576 -13686461 - Lx LINE L1 -287 6367 5387 4 1621 250 65 0 0 chr6 135830574 135830605 -13686432 - Lx LINE L1 -457 6197 6167 4 1621 684 297 75 53 chr6 135831610 135832137 -13684900 + L1MA4 LINE L1 5373 5925 -378 4 1621 432 0 0 0 chr6 135832147 135832195 -13684842 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1621 234 259 0 0 chr6 135833965 135834023 -13683014 + (TGAA)n Simple_repeat Simple_repeat 1 58 0 4 1621 455 271 9 0 chr6 135834117 135834224 -13682813 + PB1D10 SINE Alu 2 109 -8 4 1621 618 170 0 0 chr6 135834722 135834828 -13682209 + RMER12B LTR ERVK 6 111 -1293 4 1621 306 235 0 0 chr6 135834821 135834889 -13682148 + RMER12 LTR ERVK 45 112 -1210 4 1621 5007 174 61 18 chr6 135834884 135835990 -13681047 + RMER12B LTR ERVK 48 1187 -217 4 1621 507 95 0 0 chr6 135835994 135836068 -13680969 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1621 253 301 0 61 chr6 135836088 135836187 -13680850 + RLTR21 LTR ERVK 1438 1530 -42 4 1621 500 0 17 0 chr6 135836674 135836734 -13680303 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1621 428 123 14 0 chr6 135837224 135837297 -13679740 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 1621 243 88 0 0 chr6 135837521 135837555 -13679482 + (TAA)n Simple_repeat Simple_repeat 1 34 0 4 1621 1305 36 0 0 chr6 135838966 135839133 -13677904 + (CA)n Simple_repeat Simple_repeat 1 167 0 4 1621 283 296 10 10 chr6 135845070 135845169 -13671868 + GA-rich Low_complexity Low_complexity 3 101 0 4 1621 257 169 0 17 chr6 135845292 135845352 -13671685 + GA-rich Low_complexity Low_complexity 1 59 0 4 1621 1106 122 0 6 chr6 135845353 135845534 -13671503 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1621 288 318 32 32 chr6 135846561 135846717 -13670320 - MIR SINE MIR -15 247 92 4 1621 189 296 0 0 chr6 135846812 135846866 -13670171 - MIR SINE MIR -193 69 16 4 1621 684 264 94 5 chr6 135847136 135847338 -13669699 - B4A SINE B4 -72 220 1 4 1621 187 153 0 48 chr6 135848606 135848668 -13668369 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 4 1621 388 336 69 0 chr6 135848823 135848954 -13668083 - ID_B1 SINE B4 -9 215 76 4 1621 258 363 46 46 chr6 135853298 135853601 -13663436 + Lx8 LINE L1 7170 7472 -1 4 1621 504 0 0 0 chr6 135853743 135853799 -13663238 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 5 1621 459 0 0 0 chr6 135854855 135854906 -13662131 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1621 186 128 0 0 chr6 135854906 135854944 -13662093 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1621 353 307 0 9 chr6 135859261 135859376 -13657661 + (TG)n Simple_repeat Simple_repeat 2 115 0 5 1621 293 352 104 61 chr6 135859384 135859596 -13657441 - B4 SINE B4 0 292 72 5 1621 180 167 0 0 chr6 135859939 135859969 -13657068 + L2c LINE L2 3337 3366 -21 5 1621 228 346 157 39 chr6 135859978 135860378 -13656659 - Tigger15a DNA TcMar -50 665 218 5 1621 288 354 32 37 chr6 135860378 135860566 -13656471 + MLT1J LTR MaLR 1 187 -325 5 1621 294 222 0 31 chr6 135861714 135861779 -13655258 - BC1_Mm scRNA scRNA -88 64 2 5 1621 469 230 0 0 chr6 135863391 135863478 -13653559 + B1_Mur1 SINE Alu 27 113 -36 5 1621 917 117 9 35 chr6 135863492 135863714 -13653323 + CT-rich Low_complexity Low_complexity 1 216 0 5 1621 788 168 6 0 chr6 135863731 135863904 -13653133 + CT-rich Low_complexity Low_complexity 1 174 0 5 1621 686 243 27 33 chr6 135864706 135864889 -13652148 + B3A SINE B2 1 182 -16 5 1621 348 345 6 23 chr6 135866341 135866516 -13650521 - MER53 DNA hAT -3 190 19 5 1621 245 311 76 19 chr6 135866528 135866633 -13650404 - PB1D9 SINE Alu -7 113 3 5 1621 206 136 23 0 chr6 135866672 135866716 -13650321 + GA-rich Low_complexity Low_complexity 1 45 0 5 1621 921 103 13 13 chr6 135866718 135866876 -13650161 + (GGGGA)n Simple_repeat Simple_repeat 4 161 0 5 1621 248 0 31 0 chr6 135867129 135867161 -13649876 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1621 743 333 88 31 chr6 135867218 135867270 -13649767 - B4A SINE B4 -16 276 227 5 1621 297 0 0 0 chr6 135867270 135867303 -13649734 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1621 743 333 88 31 chr6 135867303 135867510 -13649527 - B4A SINE B4 -66 226 2 5 1621 287 219 38 76 chr6 135868488 135868567 -13648470 - B1F SINE Alu -5 144 69 5 1621 565 270 78 36 chr6 135869452 135869644 -13647393 + ID_B1 SINE B4 2 201 -23 5 1621 180 111 0 0 chr6 135869701 135869728 -13647309 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5 1621 1058 116 0 0 chr6 135869729 135869876 -13647161 - B1_Mus1 SINE Alu 0 148 2 5 1621 236 30 0 29 chr6 135869898 135869932 -13647105 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 5 1621 297 364 69 31 chr6 135869967 135870228 -13646809 - L2 LINE L2 -454 2965 2695 5 1621 436 262 27 20 chr6 135870518 135870666 -13646371 + B1F SINE Alu 1 149 0 5 1621 477 0 0 0 chr6 135870669 135870722 -13646315 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1621 229 319 0 53 chr6 135870729 135870805 -13646232 + ID4_ SINE ID 12 83 0 5 1621 244 329 81 23 chr6 135871524 135871698 -13645339 + ORR1D2 LTR MaLR 2 185 -185 5 1621 192 206 0 0 chr6 135872297 135872331 -13644706 + L2c LINE L2 3336 3369 -18 5 1621 238 250 18 18 chr6 135872373 135872487 -13644550 + (TATG)n Simple_repeat Simple_repeat 2 115 0 5 1621 560 243 154 0 chr6 135872503 135872672 -13644365 - ID_B1 SINE B4 -12 212 18 5 1621 227 200 118 44 chr6 135873744 135873812 -13643225 - ID4_ SINE ID -10 73 1 5 1621 1088 270 16 19 chr6 135875173 135875490 -13641547 + MLT1A0 LTR MaLR 50 365 0 5 1621 414 370 65 60 chr6 135876972 135877076 -13639961 + LTR16A LTR ERVL 20 124 -327 5 1621 396 0 0 0 chr6 135877076 135877120 -13639917 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1621 414 370 65 60 chr6 135877120 135877368 -13639669 + LTR16A LTR ERVL 125 374 -77 5 1621 803 326 3 34 chr6 135877486 135877784 -13639253 + B4A SINE B4 2 290 -2 5 1621 500 0 17 0 chr6 135877801 135877861 -13639176 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1621 182 245 94 0 chr6 135878003 135878056 -13638981 + L3 LINE CR1 4301 4358 -131 5 1621 675 270 101 75 chr6 135878396 135878434 -13638603 - B4A SINE B4 -17 275 230 5 1621 1591 164 71 97 chr6 135878434 135878826 -13638211 + ORR1C2 LTR MaLR 3 384 0 5 1621 675 270 101 75 chr6 135878826 135879055 -13637982 - B4A SINE B4 -63 229 1 5 1621 285 267 67 22 chr6 135879378 135879512 -13637525 + L2 LINE L2 2745 2884 -535 5 1621 367 68 34 0 chr6 135879686 135879745 -13637292 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1621 489 56 28 0 chr6 135879873 135879944 -13637093 - L1_Mus2 LINE L1 0 6566 6494 5 1621 506 289 184 51 chr6 135880118 135880563 -13636474 - L1MA6 LINE L1 -265 6026 5518 5 1621 301 233 55 11 chr6 135881724 135881815 -13635222 - Lx8 LINE L1 -10 7463 7369 5 1621 707 286 0 36 chr6 135883821 135883988 -13633049 + RSINE1 SINE B4 3 163 -2 5 1621 234 62 0 0 chr6 135884005 135884037 -13633000 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 5 1621 465 300 0 0 chr6 135884091 135884201 -13632836 + PB1D10 SINE Alu 3 112 -5 5 1621 2401 105 11 19 chr6 135884592 135884951 -13632086 + Lx LINE L1 6291 6646 -8 5 1621 455 293 80 6 chr6 135885266 135885441 -13631596 - B3 SINE B2 -24 192 5 5 1621 562 320 98 60 chr6 135885559 135885825 -13631212 + B4 SINE B4 7 282 -10 5 1621 261 0 0 0 chr6 135885825 135885854 -13631183 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1621 387 0 0 0 chr6 135885854 135885896 -13631141 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1621 696 212 8 13 chr6 135886352 135886592 -13630445 + GA-rich Low_complexity Low_complexity 1 238 0 5 1621 182 301 21 31 chr6 135887157 135887253 -13629784 - L3b LINE CR1 -197 285 191 5 1621 435 271 8 25 chr6 135887417 135887538 -13629499 - ID_B1 SINE B4 -7 217 99 5 1621 189 319 114 36 chr6 135887578 135887718 -13629319 - MIRb SINE MIR -15 253 103 5 1621 483 48 0 0 chr6 135887947 135888009 -13629028 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1621 391 100 14 14 chr6 135888286 135888357 -13628680 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1621 853 270 52 48 chr6 135888371 135888643 -13628394 - B4A SINE B4 -1 291 19 5 1621 408 307 29 14 chr6 135889560 135889699 -13627338 + B1F1 SINE Alu 3 143 -6 5 1621 675 254 129 39 chr6 135890065 135890397 -13626640 + L1MB1 LINE L1 5554 5915 -253 5 1621 324 200 0 0 chr6 135890414 135890494 -13626543 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1621 256 190 32 187 chr6 135890631 135890754 -13626283 - B4A SINE B4 -154 138 35 5 1621 3750 63 50 0 chr6 135891178 135891656 -13625381 + L1_Mus1 LINE L1 6066 6567 0 5 1621 287 306 47 143 chr6 135892113 135892434 -13624603 + B4 SINE B4 3 292 0 5 1621 650 220 6 3 chr6 135892435 135892784 -13624253 + (CA)n Simple_repeat Simple_repeat 1 350 0 5 1621 521 204 0 7 chr6 135892808 135892956 -13624081 + (CA)n Simple_repeat Simple_repeat 1 147 0 5 1621 26 30 0 0 chr6 135895315 135895348 -13621689 + AT_rich Low_complexity Low_complexity 1 33 0 5 1621 1407 262 14 108 chr6 135895350 135895941 -13621096 - Lx8 LINE L1 -2 7471 6937 5 1621 284 349 108 23 chr6 135897815 135897991 -13619046 + MamGypLTR3 LTR Gypsy 622 812 -27 5 1621 306 0 0 0 chr6 135898235 135898269 -13618768 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1621 701 151 6 0 chr6 135898269 135898435 -13618602 + GA-rich Low_complexity Low_complexity 2 168 0 5 1621 247 261 91 0 chr6 135898744 135898832 -13618205 - Lx5 LINE L1 -1 7049 6954 5 1621 210 268 27 27 chr6 135898954 135899027 -13618010 - L2b LINE L2 -14 3361 3289 5 1621 365 243 65 9 chr6 135899032 135899140 -13617897 - PB1D10 SINE Alu 0 117 4 5 1621 290 237 20 208 chr6 135899383 135899532 -13617505 + RSINE1 SINE B4 13 133 -32 5 1621 550 226 0 0 chr6 135900782 135900888 -13616149 + ID_B1 SINE B4 97 202 -22 5 1621 326 175 0 0 chr6 135900886 135900943 -13616094 + ID_B1 SINE B4 146 202 -22 5 1621 405 183 0 0 chr6 135900941 135901012 -13616025 + ID_B1 SINE B4 146 216 -8 5 1621 1050 253 50 20 chr6 135902118 135902417 -13614620 + Lx8 LINE L1 6820 7127 -346 5 1621 240 237 221 7 chr6 135902437 135902573 -13614464 + Lx8 LINE L1 7308 7472 -1 5 1621 236 274 87 10 chr6 135902744 135902847 -13614190 + B1F SINE Alu 7 117 -32 5 1621 1516 236 65 44 chr6 135903323 135903846 -13613191 + RMER5 LTR ERV1 1 534 0 5 1621 234 0 0 0 chr6 135903984 135904010 -13613027 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 5 1621 456 292 124 24 chr6 135904085 135904334 -13612703 - B4A SINE B4 -18 274 1 5 1621 618 225 87 62 chr6 135904610 135904852 -13612185 - MER2 DNA MER2_type 0 345 98 5 1621 279 333 135 4 chr6 135905470 135905729 -13611308 - MER33 DNA MER1_type -11 313 21 5 1621 545 42 0 14 chr6 135906127 135906153 -13610884 + (TA)n Simple_repeat Simple_repeat 1 26 0 5 1621 556 14 27 0 chr6 135906153 135906226 -13610811 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1621 545 42 0 14 chr6 135906226 135906272 -13610765 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1621 216 352 161 25 chr6 135907728 135907964 -13609073 + L3 LINE CR1 4215 4482 -7 5 1621 774 233 53 29 chr6 135908240 135908448 -13608589 - B3 SINE B2 -3 213 1 5 1621 352 118 14 14 chr6 135908724 135908793 -13608244 + (GGA)n Simple_repeat Simple_repeat 2 70 0 5 1621 270 38 0 102 chr6 135908791 135908850 -13608187 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 5 1621 195 103 0 0 chr6 135910856 135910885 -13606152 - MIRm SINE MIR -160 116 88 5 1621 186 114 227 0 chr6 135910858 135910902 -13606135 - MIRc SINE MIR -157 111 58 5 1621 558 43 0 0 chr6 135911324 135911393 -13605644 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1621 2091 153 35 14 chr6 135913518 135913913 -13603124 + ORR1B1 LTR MaLR 1 386 -8 5 1621 725 197 7 33 chr6 135914411 135914563 -13602474 - B1_Mur3 SINE Alu 0 149 2 5 1621 457 304 129 0 chr6 135916007 135916178 -13600859 + B3A SINE B2 5 197 -1 5 1621 2885 155 44 13 chr6 135916875 135917418 -13599619 + RLTR20B2 LTR ERVK 1 560 0 6 1621 303 296 0 39 chr6 135917716 135917818 -13599219 + B1F SINE Alu 1 98 -51 6 1621 405 126 22 22 chr6 135917830 135917901 -13599136 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 6 1621 3088 72 12 12 chr6 135917901 135918308 -13598729 + MTB_Mm LTR MaLR 1 407 0 6 1621 959 91 28 9 chr6 135918308 135918586 -13598451 + (TAGA)n Simple_repeat Simple_repeat 1 283 0 6 1621 24 0 0 0 chr6 135919700 135919724 -13597313 + AT_rich Low_complexity Low_complexity 1 24 0 6 1621 278 236 196 33 chr6 135920012 135920104 -13596933 + PB1D10 SINE Alu 3 109 -8 6 1621 1097 86 12 4 chr6 135920123 135920380 -13596657 + (GA)n Simple_repeat Simple_repeat 1 259 0 6 1622 357 200 0 96 chr6 135923623 135923706 -13593331 + ID_B1 SINE B4 127 201 -23 6 1622 207 100 0 0 chr6 135923712 135923742 -13593295 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1622 572 347 52 26 chr6 135923815 135924087 -13592950 + B4A SINE B4 9 287 -5 6 1622 413 84 14 0 chr6 135924101 135924172 -13592865 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 1622 201 349 56 17 chr6 135925142 135925278 -13591759 + MIRb SINE MIR 48 199 -69 6 1622 255 87 27 55 chr6 135926357 135926430 -13590607 + GA-rich Low_complexity Low_complexity 1 71 0 6 1622 394 307 20 7 chr6 135927132 135927283 -13589754 + Lx7 LINE L1 7210 7362 -334 6 1622 210 158 0 0 chr6 135927293 135927331 -13589706 + T-rich Low_complexity Low_complexity 3 40 0 6 1622 900 111 0 0 chr6 135928544 135928679 -13588358 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 6 1622 225 245 40 10 chr6 135929363 135929462 -13587575 + L1M5 LINE L1 5621 5722 -402 6 1622 877 261 0 10 chr6 135929487 135929696 -13587341 + B3 SINE B2 5 211 -5 6 1622 595 297 75 61 chr6 135930006 135930286 -13586751 - B4A SINE B4 -2 290 7 6 1622 216 237 0 0 chr6 135930297 135930335 -13586702 + G-rich Low_complexity Low_complexity 2 39 0 6 1622 608 309 42 26 chr6 135932487 135932680 -13584357 - B4 SINE B4 0 292 97 6 1622 264 382 0 35 chr6 135932871 135932985 -13584052 - ID_B1 SINE B4 -114 110 1 6 1622 428 254 61 52 chr6 135933012 135933224 -13583813 - L1M2 LINE L1 -852 5291 5078 6 1622 311 306 82 0 chr6 135933226 135933360 -13583677 + B1_Mm SINE Alu 3 147 0 6 1622 282 292 19 9 chr6 135933404 135933511 -13583526 - L1M2 LINE L1 -1085 5055 4948 6 1622 200 132 0 26 chr6 135934442 135934481 -13582556 + T-rich Low_complexity Low_complexity 2 39 0 6 1622 405 0 0 0 chr6 135934706 135934751 -13582286 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1622 806 255 66 15 chr6 135934825 135935084 -13581953 - B4A SINE B4 -20 272 1 6 1622 495 0 0 0 chr6 135935715 135935770 -13581267 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1622 894 128 0 0 chr6 135935771 135935943 -13581094 + (TC)n Simple_repeat Simple_repeat 1 172 0 6 1622 333 0 0 0 chr6 135935943 135935979 -13581058 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1622 3525 28 0 0 chr6 135935979 135936375 -13580662 - MTA_Mm LTR MaLR 0 396 1 6 1622 449 346 10 82 chr6 135936533 135936728 -13580309 - B4A SINE B4 -104 188 8 6 1622 250 242 79 55 chr6 135936799 135936926 -13580111 + MIRb SINE MIR 73 202 -66 6 1622 312 27 0 0 chr6 135937630 135937667 -13579370 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1622 234 353 155 0 chr6 135937667 135937783 -13579254 + L2a LINE L2 3287 3420 -6 6 1622 235 136 83 17 chr6 135937997 135938057 -13578980 + MIR SINE MIR 193 256 -6 6 1622 872 281 86 38 chr6 135940349 135940641 -13576396 + ORR1D2 LTR MaLR 6 311 -59 6 1622 252 86 0 0 chr6 135940649 135940684 -13576353 + (CAG)n Simple_repeat Simple_repeat 1 35 0 6 1622 506 290 29 6 chr6 135941866 135942036 -13575001 + MER3 DNA MER1_type 34 207 -2 6 1622 21 0 0 0 chr6 135942615 135942636 -13574401 + AT_rich Low_complexity Low_complexity 1 21 0 6 1622 302 232 75 67 chr6 135942659 135942779 -13574258 + B1F SINE Alu 29 149 0 6 1622 318 206 0 0 chr6 135942847 135942920 -13574117 + GA-rich Low_complexity Low_complexity 3 75 0 6 1622 246 206 0 0 chr6 135943016 135943079 -13573958 + GA-rich Low_complexity Low_complexity 2 64 0 6 1622 249 180 0 0 chr6 135944589 135944639 -13572398 + CT-rich Low_complexity Low_complexity 4 53 0 6 1622 902 242 73 19 chr6 135946107 135946358 -13570679 + B4A SINE B4 2 269 -23 6 1622 378 0 0 0 chr6 135946358 135946400 -13570637 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1622 253 292 0 0 chr6 135946674 135946739 -13570298 + MLT1B LTR MaLR 190 254 -136 6 1622 237 327 103 73 chr6 135946946 135947246 -13569791 - MER46C DNA MER2_type -5 333 25 6 1622 211 357 69 15 chr6 135947954 135948085 -13568952 + L2b LINE L2 3238 3375 0 6 1622 583 253 108 9 chr6 135949439 135949694 -13567343 - ORR1D1 LTR MaLR 0 359 66 6 1622 2673 221 46 31 chr6 135950077 135950249 -13566788 - Lx9 LINE L1 -1 7643 7470 6 1622 384 22 0 0 chr6 135950249 135950294 -13566743 + (CCA)n Simple_repeat Simple_repeat 3 47 0 6 1622 2673 221 46 31 chr6 135950294 135950790 -13566247 - Lx9 LINE L1 -175 7469 6966 6 1622 355 288 65 18 chr6 135950831 135951001 -13566036 - Tigger13a DNA MER2_type -107 664 487 6 1622 410 308 107 12 chr6 135951036 135951289 -13565748 - L1M5 LINE L1 -1215 4931 4655 6 1622 342 305 110 0 chr6 135951368 135951486 -13565551 - B1_Mur1 SINE Alu -14 135 5 6 1622 1574 308 103 38 chr6 135951677 135952999 -13564038 - L1M5 LINE L1 -1801 4345 2933 6 1622 1133 83 7 0 chr6 135952999 135953144 -13563893 - B1_Mus2 SINE Alu 0 147 2 6 1622 1574 308 103 38 chr6 135953144 135953258 -13563779 - L1M5 LINE L1 -3214 2932 2816 6 1622 319 53 17 34 chr6 135953259 135953318 -13563719 + (TTTTTG)n Simple_repeat Simple_repeat 2 59 0 6 1622 1119 234 83 29 chr6 135954243 135954554 -13562483 - MTE2b LTR MaLR 0 359 50 6 1622 228 128 103 0 chr6 135954558 135954597 -13562440 - L1MC LINE L1 -3078 3068 3026 6 1622 1263 244 54 37 chr6 135955694 135956047 -13560990 + ORR1D2 LTR MaLR 1 359 -11 6 1622 342 0 0 0 chr6 135956293 135956331 -13560706 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1622 227 294 181 48 chr6 135956441 135956773 -13560264 - L1M5 LINE L1 -226 5898 5523 6 1622 1804 45 5 0 chr6 135957333 135957554 -13559483 - L1Md_T LINE L1 0 6582 6361 6 1622 420 71 0 0 chr6 135958666 135958722 -13558315 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1622 564 231 164 20 chr6 135959049 135959321 -13557716 - MTE2b LTR MaLR -14 405 110 6 1622 1191 273 47 19 chr6 135959404 135959766 -13557271 + MTEb LTR MaLR 8 379 0 6 1622 236 269 8 0 chr6 135960140 135960222 -13556815 + GA-rich Low_complexity Low_complexity 1 82 0 6 1622 472 131 11 74 chr6 135960223 135960412 -13556625 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 6 1622 564 240 0 0 chr6 135962735 135962860 -13554177 + B1_Mur1 SINE Alu 17 141 -8 6 1622 206 396 0 18 chr6 135964118 135964231 -13552806 - MIRb SINE MIR -105 163 53 6 1622 654 247 32 7 chr6 135964459 135964614 -13552423 + Lx8 LINE L1 7155 7313 -160 6 1622 1184 82 0 0 chr6 135965590 135965737 -13551300 + B1_Mus1 SINE Alu 2 148 0 6 1622 21 36 0 0 chr6 135965737 135965765 -13551272 + AT_rich Low_complexity Low_complexity 1 28 0 6 1622 284 333 31 8 chr6 135965919 135966046 -13550991 - Charlie19a DNA Charlie -175 211 82 6 1622 188 328 31 15 chr6 135966081 135966146 -13550891 - MIRm SINE MIR -122 154 89 6 1622 215 61 30 0 chr6 135966252 135966285 -13550752 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 6 1622 1370 213 3 30 chr6 135966285 135966585 -13550452 - Lx4B LINE L1 -14 7044 6753 6 1622 279 0 0 0 chr6 135967857 135967888 -13549149 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 6 1622 339 311 17 0 chr6 135968322 135968441 -13548596 + (CATATA)n Simple_repeat Simple_repeat 3 123 0 6 1622 432 104 0 0 chr6 135968443 135968510 -13548527 + (CATA)n Simple_repeat Simple_repeat 4 70 0 6 1622 314 172 0 21 chr6 135968624 135968719 -13548318 + (TCTCTG)n Simple_repeat Simple_repeat 4 96 0 6 1622 216 0 0 0 chr6 135968725 135968749 -13548288 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1622 466 63 43 29 chr6 135969559 135969676 -13547361 - L1Md_F2 LINE L1 -45 5832 5711 6 1622 3254 68 31 50 chr6 135969676 135970153 -13546884 + L1Md_F2 LINE L1 6115 6582 0 6 1622 882 250 182 16 chr6 135970749 135971056 -13545981 - ORR1E LTR MaLR -1 358 1 6 1622 253 301 54 0 chr6 135971592 135971685 -13545352 + MIR3 SINE MIR 96 193 -15 6 1622 214 258 15 15 chr6 135972029 135972096 -13544941 - MIR SINE MIR -61 147 81 6 1622 316 265 12 74 chr6 135972321 135972540 -13544497 + (TATATG)n Simple_repeat Simple_repeat 1 205 0 6 1622 687 290 42 49 chr6 135972541 135972842 -13544195 - B4A SINE B4 0 292 7 6 1622 232 302 30 0 chr6 135973444 135973545 -13543492 - MIR SINE MIR -62 214 101 6 1622 408 292 88 11 chr6 135973554 135973693 -13543344 + ID_B1 SINE B4 68 212 -12 6 1622 3188 224 53 55 chr6 135978006 135978875 -13538162 + Lx7 LINE L1 6830 7696 0 6 1622 831 181 0 0 chr6 135978901 135979061 -13537976 + GA-rich Low_complexity Low_complexity 2 161 0 6 1622 228 35 0 0 chr6 135979644 135979673 -13537364 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1622 200 264 130 11 chr6 135980143 135980235 -13536802 - MIRc SINE MIR -113 155 53 6 1622 258 250 83 67 chr6 135980603 135980723 -13536314 - ORR1E LTR MaLR -4 375 254 6 1622 278 255 0 45 chr6 135980807 135980963 -13536074 + (CAGA)n Simple_repeat Simple_repeat 2 150 0 6 1622 267 314 49 21 chr6 135981918 135982061 -13534976 - L2a LINE L2 0 3426 3280 6 1622 260 217 53 92 chr6 135982165 135982241 -13534796 + MTEb LTR MaLR 20 92 -287 6 1622 269 288 128 58 chr6 135982306 135982564 -13534473 + MTEb LTR MaLR 80 373 -6 6 1622 638 323 121 8 chr6 135982802 135983058 -13533979 - B4A SINE B4 -1 291 7 7 1622 264 77 0 0 chr6 135983161 135983200 -13533837 + (TAA)n Simple_repeat Simple_repeat 2 40 0 7 1622 407 337 109 33 chr6 135983288 135983656 -13533381 - MLT1C LTR MaLR -2 465 70 7 1622 410 318 147 54 chr6 135983658 135983991 -13533046 + MTEb LTR MaLR 2 365 -14 7 1622 2766 259 51 13 chr6 135985918 135986768 -13530269 + RCHARR1 DNA MER1_type 76 957 -17 7 1622 211 333 0 16 chr6 135987260 135987324 -13529713 + MIRc SINE MIR 91 153 -115 7 1622 1213 47 0 0 chr6 135988342 135988490 -13528547 + B1_Mus1 SINE Alu 1 148 0 7 1622 735 71 0 0 chr6 135988502 135988600 -13528437 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 7 1622 980 117 0 32 chr6 135988840 135989025 -13528012 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 7 1622 540 70 163 0 chr6 135989043 135989129 -13527908 + B1_Mm SINE Alu 35 134 -13 7 1622 277 43 21 21 chr6 135989129 135989177 -13527860 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 7 1622 218 217 14 0 chr6 135989226 135989295 -13527742 + GA-rich Low_complexity Low_complexity 2 71 0 7 1622 203 175 17 34 chr6 135989346 135989405 -13527632 + A-rich Low_complexity Low_complexity 6 63 0 7 1622 194 357 20 39 chr6 135989941 135990043 -13526994 + MIRb SINE MIR 26 125 -143 7 1622 212 250 176 25 chr6 135991859 135991978 -13525059 + MIRb SINE MIR 111 247 -21 7 1622 1124 153 37 23 chr6 135993511 135993725 -13523312 - URR1B DNA MER1_type 0 225 9 7 1622 214 341 22 43 chr6 135994923 135995061 -13521976 - MIRc SINE MIR -64 204 70 7 1622 207 88 0 0 chr6 135995079 135995113 -13521924 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1622 372 276 163 50 chr6 135995136 135995277 -13521760 - B3A SINE B2 -41 157 1 7 1622 276 323 56 37 chr6 135995749 135995910 -13521127 - MIRb SINE MIR -12 256 93 7 1622 359 247 14 0 chr6 135997447 135997520 -13519517 - ID4 SINE ID -8 75 2 7 1622 321 332 123 20 chr6 135997784 135997987 -13519050 - MIRb SINE MIR -25 243 20 7 1622 180 111 0 0 chr6 135998015 135998042 -13518995 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 7 1622 398 283 50 12 chr6 135998098 135998259 -13518778 + MIRc SINE MIR 102 268 0 7 1622 377 315 27 0 chr6 135998960 135999071 -13517966 + PB1D10 SINE Alu 1 114 -3 7 1622 443 236 9 36 chr6 136000008 136000118 -13516919 - B1_Mur4 SINE Alu 0 150 44 1 1622 411 302 76 2 chr6 136000346 136000588 -13516449 + Lx7 LINE L1 6968 7247 -226 2 1622 21 0 0 0 chr6 136000933 136000954 -13516083 + AT_rich Low_complexity Low_complexity 1 21 0 3 1622 349 221 98 49 chr6 136000975 136001118 -13515919 + Lx7 LINE L1 7547 7696 0 4 1622 906 115 0 19 chr6 136002030 136002189 -13514848 + (TATATG)n Simple_repeat Simple_repeat 5 160 0 5 1622 344 268 61 18 chr6 136002189 136002303 -13514734 + B1F SINE Alu 28 146 -3 6 1622 298 244 329 0 chr6 136002856 136002995 -13514042 - B3A SINE B2 -28 188 4 7 1622 672 265 48 37 chr6 136003036 136003116 -13513921 + ID SINE ID 2 83 -141 8 1622 216 315 109 8 chr6 136003116 136003244 -13513793 + B1_Mur4 SINE Alu 1 141 -9 9 1622 711 54 0 0 chr6 136003304 136003396 -13513641 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 1622 402 126 29 0 chr6 136003396 136003499 -13513538 + GA-rich Low_complexity Low_complexity 2 107 0 1 1622 484 254 22 30 chr6 136003724 136003858 -13513179 + RSINE1 SINE B4 2 134 -31 1 1622 242 233 17 0 chr6 136003858 136003918 -13513119 + (CAT)n Simple_repeat Simple_repeat 2 62 0 1 1622 222 37 0 0 chr6 136003919 136003946 -13513091 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1 1622 378 0 0 0 chr6 136005154 136005196 -13511841 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1622 613 288 218 0 chr6 136005731 136005960 -13511077 - B4A SINE B4 -12 280 2 1 1622 823 244 193 34 chr6 136006335 136006662 -13510375 + MTEb LTR MaLR 1 379 0 1 1622 447 19 0 0 chr6 136006696 136006748 -13510289 + (TAA)n Simple_repeat Simple_repeat 1 52 0 1 1622 639 153 164 21 chr6 136008317 136008457 -13508580 - ID_B1 SINE B4 0 224 65 1 1622 772 216 127 49 chr6 136010160 136010427 -13506610 - B4 SINE B4 -4 288 1 2 1622 450 0 0 0 chr6 136011227 136011277 -13505760 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1622 189 0 0 0 chr6 136011392 136011413 -13505624 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1622 470 151 39 16 chr6 136011670 136011798 -13505239 + (TCTG)n Simple_repeat Simple_repeat 2 132 0 2 1622 256 297 54 0 chr6 136012342 136012416 -13504621 + ID2 SINE ID 1 78 -5 2 1622 307 234 131 0 chr6 136012956 136013063 -13503974 - L1ME1 LINE L1 0 6179 6059 2 1622 531 56 0 0 chr6 136013097 136013168 -13503869 + (TC)n Simple_repeat Simple_repeat 1 71 0 2 1622 311 317 133 14 chr6 136013168 136013455 -13503582 - L1MD3 LINE L1 -2013 5982 5661 2 1622 963 128 0 27 chr6 136013562 136013747 -13503290 + GA-rich Low_complexity Low_complexity 1 180 0 2 1622 491 336 58 5 chr6 136013804 136014028 -13503009 - B4A SINE B4 -56 236 1 2 1622 370 266 102 44 chr6 136014238 136014533 -13502504 - L1MD3 LINE L1 -799 5347 5036 2 1622 400 306 113 20 chr6 136015217 136015464 -13501573 - L1M4 LINE L1 -1919 4227 3958 3 1622 881 267 153 2 chr6 136016258 136016682 -13500355 - RMER5 LTR ERV1 0 534 47 3 1622 1018 149 144 0 chr6 136017692 136017887 -13499150 + URR1A DNA MER1_type 1 223 -3 3 1622 2184 90 3 0 chr6 136018246 136018557 -13498480 + ORR1A2 LTR MaLR 1 312 -15 3 1622 920 221 28 19 chr6 136019619 136019831 -13497206 + B3 SINE B2 1 214 -2 3 1622 341 268 58 34 chr6 136020149 136020331 -13496706 - MIRb SINE MIR -50 218 30 3 1622 238 276 25 38 chr6 136020585 136020664 -13496373 + Lx9 LINE L1 5831 5908 -1736 3 1622 2833 194 77 3 chr6 136020661 136021288 -13495749 + Lx9 LINE L1 6972 7644 0 3 1622 297 319 0 0 chr6 136021971 136022062 -13494975 + MamRep1879 DNA hAT? 2 92 -124 3 1622 783 194 34 14 chr6 136022283 136022429 -13494608 - B1_Mur1 SINE Alu 0 149 1 3 1622 700 325 65 16 chr6 136024573 136024960 -13492077 + Charlie13a DNA Charlie 1104 1509 -5 3 1622 193 270 10 10 chr6 136025445 136025546 -13491491 + (TG)n Simple_repeat Simple_repeat 2 102 0 4 1622 525 312 46 68 chr6 136025613 136025850 -13491187 - B4A SINE B4 -59 233 2 4 1622 462 161 0 0 chr6 136025862 136025955 -13491082 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 1622 456 77 0 0 chr6 136025955 136026020 -13491017 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1622 579 250 0 61 chr6 136026026 136026139 -13490898 - RSINE1 SINE B4 -31 134 28 4 1622 1165 263 19 107 chr6 136026139 136026552 -13490485 + MTE2a LTR MaLR 1 377 -2 4 1622 579 250 0 61 chr6 136026552 136026570 -13490467 - RSINE1 SINE B4 -138 27 11 4 1622 929 291 11 37 chr6 136026863 136027216 -13489821 + L1ME4a LINE L1 5543 5886 -238 4 1622 286 159 0 60 chr6 136027332 136027399 -13489638 + L1ME4a LINE L1 6062 6124 0 4 1622 1852 154 71 41 chr6 136027890 136028256 -13488781 + ORR1C1 LTR MaLR 1 377 -1 4 1622 210 197 0 62 chr6 136028260 136028325 -13488712 - MIR SINE MIR -60 148 88 4 1622 598 295 72 5 chr6 136028775 136028983 -13488054 + ID_B1 SINE B4 3 224 0 5 1622 214 176 0 0 chr6 136028984 136029018 -13488019 + polypurine Low_complexity Low_complexity 2 35 0 5 1622 619 84 8 48 chr6 136029022 136029147 -13487890 + (GGGA)n Simple_repeat Simple_repeat 4 123 0 5 1622 820 234 64 5 chr6 136029376 136029632 -13487405 + L1MA4 LINE L1 5659 5932 -224 5 1622 765 144 0 0 chr6 136029638 136029770 -13487267 + (TG)n Simple_repeat Simple_repeat 1 132 0 5 1622 795 50 0 0 chr6 136030661 136030761 -13486276 + (TC)n Simple_repeat Simple_repeat 1 100 0 5 1622 215 312 127 8 chr6 136030771 136030897 -13486140 + MIRb SINE MIR 70 210 -58 5 1622 283 192 26 0 chr6 136031930 136032008 -13485029 + GA-rich Low_complexity Low_complexity 3 82 0 5 1622 324 324 194 16 chr6 136032498 136032746 -13484291 + B4A SINE B4 1 292 0 5 1622 510 293 0 0 chr6 136032754 136032887 -13484150 + (CA)n Simple_repeat Simple_repeat 1 133 0 5 1622 22 35 0 0 chr6 136033603 136033632 -13483405 + AT_rich Low_complexity Low_complexity 1 29 0 6 1622 657 250 42 37 chr6 136033882 136034073 -13482964 - B3A SINE B2 0 198 7 6 1622 775 250 21 16 chr6 136034336 136034523 -13482514 - Lx6 LINE L1 -27 7433 7246 6 1622 722 225 19 0 chr6 136035009 136035169 -13481868 + B3A SINE B2 36 198 0 6 1622 397 312 52 6 chr6 136035186 136035360 -13481677 - L1MEe LINE L1 -702 5471 5290 6 1622 258 194 0 69 chr6 136035548 136035620 -13481417 + MER3 DNA MER1_type 142 208 -1 6 1622 233 245 19 0 chr6 136035579 136035632 -13481405 - MER3 DNA MER1_type -120 89 36 6 1622 353 341 17 56 chr6 136035996 136036176 -13480861 - MTEa LTR MaLR -201 178 6 6 1622 1068 317 41 10 chr6 136036191 136036580 -13480457 - MTEa-int LTR MaLR -18 1562 1162 6 1622 2520 173 51 15 chr6 136036581 136037109 -13479928 - RMER15 LTR ERVL 0 575 29 6 1622 895 218 14 38 chr6 136037221 136037431 -13479606 + Lx8 LINE L1 7041 7245 -228 6 1622 24 0 0 0 chr6 136037643 136037667 -13479370 + AT_rich Low_complexity Low_complexity 1 24 0 7 1622 447 306 43 29 chr6 136037677 136037815 -13479222 - MTEa-int LTR MaLR -1217 363 224 6 1622 638 229 65 0 chr6 136038018 136038171 -13478866 + B3 SINE B2 53 215 -1 7 1622 589 296 83 38 chr6 136038221 136038763 -13478274 - L1MEe LINE L1 -2197 3949 3398 6 1622 237 33 0 0 chr6 136038782 136038812 -13478225 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1622 2214 56 9 73 chr6 136039108 136039435 -13477602 + L1Md_F2 LINE L1 6277 6582 0 7 1622 338 325 108 51 chr6 136039550 136040354 -13476683 - L1MEe LINE L1 -3797 2369 1520 6 1622 275 267 0 43 chr6 136040856 136040950 -13476087 - L1MEe LINE L1 -5092 1044 955 6 1622 523 0 30 0 chr6 136042059 136042126 -13474911 + (TG)n Simple_repeat Simple_repeat 2 70 0 7 1622 329 330 24 33 chr6 136042562 136042772 -13474265 + L1ME3 LINE L1 5842 6049 -113 7 1622 2181 75 3 59 chr6 136042848 136043186 -13473851 + ORR1A2 LTR MaLR 9 327 0 7 1622 575 149 0 0 chr6 136044208 136044302 -13472735 + L1_Mur2 LINE L1 4902 4995 -882 7 1622 186 43 0 0 chr6 136044304 136044327 -13472710 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7 1622 1063 71 0 0 chr6 136044334 136044475 -13472562 - B1_Mus2 SINE Alu 0 147 7 7 1622 447 173 0 133 chr6 136044369 136044489 -13472548 - MT2B LTR ERVL -337 264 161 8 1622 6890 122 25 5 chr6 136044489 136046100 -13470937 + Lx LINE L1 5010 6654 0 8 1622 1017 210 29 0 chr6 136046363 136046568 -13470469 + B3 SINE B2 6 216 0 8 1622 24 32 0 0 chr6 136046568 136046599 -13470438 + AT_rich Low_complexity Low_complexity 1 31 0 8 1622 239 271 144 10 chr6 136046891 136046988 -13470049 - PB1D7 SINE Alu -6 114 5 8 1622 372 139 0 0 chr6 136047288 136047367 -13469670 + (CA)n Simple_repeat Simple_repeat 2 80 0 8 1622 425 236 106 0 chr6 136049065 136049188 -13467849 - B1F SINE Alu -9 140 5 8 1622 609 265 142 32 chr6 136049355 136049608 -13467429 + B4A SINE B4 2 282 -10 8 1622 214 355 0 21 chr6 136049610 136049705 -13467332 + (CATG)n Simple_repeat Simple_repeat 2 94 0 8 1622 21 0 0 0 chr6 136050217 136050238 -13466799 + AT_rich Low_complexity Low_complexity 1 21 0 8 1622 297 341 8 0 chr6 136050820 136050946 -13466091 + B1_Mus1 SINE Alu 13 139 -9 9 1622 325 253 223 6 chr6 136051247 136051422 -13465615 + Lx8 LINE L1 7259 7471 -2 9 1622 447 251 72 105 chr6 136051759 136051968 -13465069 + MER3 DNA MER1_type 8 209 0 9 1622 570 317 56 37 chr6 136052193 136052462 -13464575 + B4A SINE B4 1 274 -18 9 1622 513 32 0 0 chr6 136052471 136052534 -13464503 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1623 1694 153 72 72 chr6 136053107 136053481 -13463556 - ORR1D1 LTR MaLR 0 374 1 9 1623 374 265 51 0 chr6 136053839 136053937 -13463100 + PB1D7 SINE Alu 17 119 -1 9 1623 225 306 14 14 chr6 136053939 136054012 -13463025 + GA-rich Low_complexity Low_complexity 2 74 0 9 1623 1359 84 11 0 chr6 136054822 136055000 -13462037 + B2_Mm1t SINE B2 1 180 -13 9 1623 376 103 336 27 chr6 136055098 136055208 -13461829 + B2_Mm2 SINE B2 47 190 -5 9 1623 238 287 27 87 chr6 136055483 136055632 -13461405 + MIRc SINE MIR 20 159 -109 1 1623 665 288 90 20 chr6 136057061 136057204 -13459833 + Lx8 LINE L1 7182 7335 -138 1 1623 356 88 0 17 chr6 136057204 136057262 -13459775 + (TTA)n Simple_repeat Simple_repeat 2 58 0 1 1623 665 288 90 20 chr6 136057262 136057363 -13459674 + Lx8 LINE L1 7336 7443 -30 1 1623 549 52 42 34 chr6 136058815 136058934 -13458103 + (TA)n Simple_repeat Simple_repeat 2 121 0 1 1623 255 335 21 72 chr6 136059092 136059285 -13457752 + MIR SINE MIR 78 260 -2 1 1623 199 283 0 54 chr6 136059820 136059876 -13457161 + L3 LINE CR1 3540 3592 -897 1 1623 297 118 0 0 chr6 136060193 136060244 -13456793 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 1 1623 2447 134 3 8 chr6 136060341 136060710 -13456327 + ORR1B2 LTR MaLR 1 367 0 1 1623 771 276 85 47 chr6 136061929 136062093 -13454944 - MTEb LTR MaLR 0 379 203 1 1623 969 34 0 0 chr6 136062093 136062210 -13454827 + (GA)n Simple_repeat Simple_repeat 2 118 0 1 1623 771 276 85 47 chr6 136062210 136062410 -13454627 - MTEb LTR MaLR -177 202 1 1 1623 261 241 0 0 chr6 136062883 136062941 -13454096 - PB1D10 SINE Alu -9 108 51 1 1623 955 302 7 57 chr6 136064795 136065093 -13451944 - B4 SINE B4 -4 288 6 1 1623 312 336 96 33 chr6 136065097 136065429 -13451608 + L3 LINE CR1 1897 2249 -2240 1 1623 594 293 18 0 chr6 136065448 136065612 -13451425 - MER58A DNA MER1_type -13 211 45 1 1623 372 325 17 17 chr6 136065832 136065948 -13451089 + PB1D10 SINE Alu 1 116 -1 1 1623 240 318 31 38 chr6 136066146 136066306 -13450731 + L3 LINE CR1 2714 2872 -1617 1 1623 255 236 0 0 chr6 136066626 136066698 -13450339 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1623 243 196 18 18 chr6 136066793 136066850 -13450187 + GA-rich Low_complexity Low_complexity 5 61 0 1 1623 947 230 24 5 chr6 136066851 136067061 -13449976 - B4 SINE B4 -78 214 1 1 1623 267 276 0 0 chr6 136067091 136067149 -13449888 + PB1D10 SINE Alu 32 89 -28 1 1623 661 234 19 19 chr6 136067477 136067638 -13449399 + B3A SINE B2 11 171 -27 1 1623 263 85 21 0 chr6 136067641 136067688 -13449349 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1623 2213 96 12 67 chr6 136069428 136069774 -13447263 + ORR1A2 LTR MaLR 1 327 0 1 1623 273 364 60 36 chr6 136071195 136071443 -13445594 + LTR33 LTR ERVL 256 509 -6 1 1623 198 0 0 0 chr6 136071804 136071826 -13445211 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1 1623 283 216 115 19 chr6 136072369 136072473 -13444564 - MIRb SINE MIR -64 204 91 1 1623 621 0 0 0 chr6 136072904 136072973 -13444064 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1623 1241 84 0 11 chr6 136072973 136073154 -13443883 + (GAA)n Simple_repeat Simple_repeat 1 179 0 1 1623 758 67 0 9 chr6 136073171 136073277 -13443760 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 1 1623 200 379 0 11 chr6 136073697 136073785 -13443252 + MIR SINE MIR 20 106 -156 1 1623 316 306 32 8 chr6 136074230 136074355 -13442682 + L1_Mm LINE L1 5323 5450 -433 1 1623 571 320 104 13 chr6 136074341 136074524 -13442513 + L1MA4A LINE L1 5591 5784 -519 1 1623 204 40 0 0 chr6 136074524 136074549 -13442488 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1623 571 309 103 40 chr6 136074549 136074763 -13442274 + L1MA4A LINE L1 5785 6013 -284 1 1623 650 253 62 22 chr6 136075314 136075492 -13441545 + ID_B1 SINE B4 29 213 -11 1 1623 282 186 129 0 chr6 136075944 136076014 -13441023 + L1MEe LINE L1 890 968 -5102 1 1623 467 263 99 77 chr6 136076444 136076666 -13440371 + B4 SINE B4 3 229 -63 1 1623 369 0 0 0 chr6 136077311 136077352 -13439685 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1623 413 281 169 42 chr6 136077474 136077782 -13439255 + Lx9 LINE L1 7296 7642 -2 1 1623 326 253 123 6 chr6 136077796 136077959 -13439078 + L1MEe LINE L1 2024 2205 -3895 1 1623 476 259 154 97 chr6 136077999 136078525 -13438512 + L1ME1 LINE L1 5617 6172 -7 1 1623 477 0 0 0 chr6 136079330 136079383 -13437654 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1623 650 224 7 20 chr6 136079943 136080093 -13436944 - B1_Mur3 SINE Alu -1 148 1 1 1623 476 271 89 50 chr6 136080096 136080275 -13436762 - B3A SINE B2 -8 187 2 1 1623 2501 140 45 2 chr6 136081907 136082307 -13434730 - MTC LTR MaLR 0 421 5 1 1623 21 0 0 0 chr6 136082309 136082330 -13434707 + AT_rich Low_complexity Low_complexity 1 21 0 1 1623 199 274 104 52 chr6 136083101 136083236 -13433801 + L2a LINE L2 3285 3426 0 1 1623 195 69 0 0 chr6 136083356 136083385 -13433652 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1623 193 323 9 57 chr6 136083725 136083830 -13433207 - MIRb SINE MIR -59 209 110 1 1623 1917 205 10 35 chr6 136084034 136084439 -13432598 - MTD LTR MaLR -13 406 12 1 1623 431 102 34 11 chr6 136084655 136084744 -13432293 + (TG)n Simple_repeat Simple_repeat 1 91 0 1 1623 614 229 46 0 chr6 136085699 136085830 -13431207 + B1_Mur3 SINE Alu 2 138 -11 1 1623 243 0 0 0 chr6 136085830 136085857 -13431180 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1623 395 265 31 0 chr6 136085952 136086050 -13430987 + B1F SINE Alu 39 139 -10 1 1623 588 253 113 6 chr6 136086390 136086549 -13430488 + B4 SINE B4 1 176 -116 1 1623 442 263 95 74 chr6 136086592 136086740 -13430297 + B4A SINE B4 142 292 0 1 1623 443 155 30 30 chr6 136086885 136086985 -13430052 + Lx4B LINE L1 6955 7054 -4 1 1623 220 297 0 30 chr6 136086990 136087056 -13429981 + GA-rich Low_complexity Low_complexity 4 67 0 1 1623 1011 147 0 0 chr6 136087056 136087233 -13429804 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 1 1623 211 405 13 19 chr6 136089764 136089920 -13427117 + MIRb SINE MIR 79 233 -35 1 1623 182 299 119 0 chr6 136091046 136091113 -13425924 + L2c LINE L2 3251 3325 -62 1 1623 590 0 14 0 chr6 136091205 136091275 -13425762 + (TAAA)n Simple_repeat Simple_repeat 3 73 0 1 1623 528 16 0 0 chr6 136091275 136091335 -13425702 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1623 223 256 11 11 chr6 136091394 136091485 -13425552 + (TATG)n Simple_repeat Simple_repeat 4 94 0 1 1623 418 277 153 33 chr6 136091554 136091737 -13425300 - B4A SINE B4 -26 266 62 1 1623 645 14 0 0 chr6 136091896 136091970 -13425067 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 1 1623 385 306 32 0 chr6 136092977 136093101 -13423936 - ID_B1 SINE B4 -15 209 82 1 1623 378 292 21 21 chr6 136093184 136093324 -13423713 - MLT1G LTR MaLR -383 208 69 1 1623 669 236 0 0 chr6 136094965 136095139 -13421898 + (TA)n Simple_repeat Simple_repeat 2 175 0 1 1623 464 326 49 7 chr6 136095369 136095511 -13421526 + RSINE1 SINE B4 11 158 -7 1 1623 198 0 0 0 chr6 136097829 136097851 -13419186 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1623 1362 237 88 3 chr6 136097910 136098286 -13418751 - L1MA8 LINE L1 -5 6286 5879 1 1623 315 252 16 24 chr6 136098383 136098635 -13418402 + GA-rich Low_complexity Low_complexity 1 249 0 1 1623 310 231 43 11 chr6 136098914 136099006 -13418031 - MER3 DNA MER1_type -114 95 1 1 1623 277 316 0 0 chr6 136099675 136099754 -13417283 + ID4_ SINE ID 1 79 -4 1 1623 554 255 56 14 chr6 136100731 136100874 -13416163 - MER20 DNA MER1_type -30 189 41 1 1623 376 276 13 58 chr6 136100921 136101075 -13415962 - MIR SINE MIR -32 230 84 1 1623 2060 94 0 62 chr6 136101811 136102150 -13414887 + ORR1A3 LTR MaLR 1 318 -8 1 1623 328 40 0 39 chr6 136102742 136102794 -13414243 + (TCC)n Simple_repeat Simple_repeat 1 50 0 1 1623 246 116 0 0 chr6 136103057 136103100 -13413937 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1623 262 0 0 50 chr6 136103999 136104039 -13412998 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1623 256 281 37 0 chr6 136104075 136104157 -13412880 + CT-rich Low_complexity Low_complexity 2 86 0 1 1623 228 67 0 0 chr6 136106251 136106281 -13410756 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1623 427 325 0 16 chr6 136106350 136106472 -13410565 - RSINE1 SINE B4 -43 122 3 1 1623 1130 82 0 0 chr6 136106650 136106797 -13410240 + B1_Mus1 SINE Alu 2 148 0 1 1623 25 31 0 0 chr6 136106798 136106830 -13410207 + AT_rich Low_complexity Low_complexity 1 32 0 1 1623 573 304 0 0 chr6 136106937 136107072 -13409965 - RSINE1 SINE B4 -29 136 2 1 1623 38 0 0 0 chr6 136107683 136107721 -13409316 + AT_rich Low_complexity Low_complexity 1 38 0 1 1623 232 291 144 33 chr6 136108453 136108634 -13408403 + MIR SINE MIR 18 218 -44 1 1623 200 291 133 14 chr6 136109338 136109481 -13407556 - MIRb SINE MIR -58 210 51 1 1623 419 214 191 0 chr6 136109943 136110140 -13406897 + B4A SINE B4 1 234 -58 1 1623 939 124 11 6 chr6 136110181 136110359 -13406678 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1623 223 323 86 0 chr6 136110498 136110591 -13406446 + MIRb SINE MIR 110 210 -58 1 1623 367 267 99 0 chr6 136112820 136112921 -13404116 + B1F SINE Alu 18 128 -21 1 1623 507 33 0 0 chr6 136112925 136112986 -13404051 + (TAAAA)n Simple_repeat Simple_repeat 3 63 0 1 1623 479 182 8 0 chr6 136113044 136113170 -13403867 + (TG)n Simple_repeat Simple_repeat 2 128 0 1 1623 409 303 174 24 chr6 136113176 136113423 -13403614 - B4 SINE B4 -8 284 1 1 1623 423 0 0 0 chr6 136113851 136113898 -13403139 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1623 927 94 0 0 chr6 136113952 136114101 -13402936 + (CA)n Simple_repeat Simple_repeat 2 150 0 1 1623 362 304 59 7 chr6 136114986 136115122 -13401915 + ID_B1 SINE B4 80 222 -2 1 1623 308 267 0 72 chr6 136116664 136116761 -13400276 + MER5A1 DNA MER1_type 70 159 -7 1 1623 249 305 73 0 chr6 136116841 136116925 -13400112 + MIR SINE MIR 72 164 -104 1 1623 29 0 0 0 chr6 136116990 136117019 -13400018 + AT_rich Low_complexity Low_complexity 1 29 0 1 1623 212 333 8 59 chr6 136117086 136117204 -13399833 - L2c LINE L2 -18 3369 3258 1 1623 702 35 0 0 chr6 136118549 136118634 -13398403 + (TCTCC)n Simple_repeat Simple_repeat 2 86 0 2 1623 31 44 0 0 chr6 136120336 136120381 -13396656 + AT_rich Low_complexity Low_complexity 1 45 0 2 1623 225 209 0 0 chr6 136121767 136121810 -13395227 + T-rich Low_complexity Low_complexity 1 43 0 2 1623 226 219 0 0 chr6 136122230 136122271 -13394766 + (CACG)n Simple_repeat Simple_repeat 1 41 0 2 1623 229 286 12 12 chr6 136122454 136122539 -13394498 + (CG)n Simple_repeat Simple_repeat 2 86 0 2 1623 356 0 23 0 chr6 136123441 136123485 -13393552 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1623 186 304 83 50 chr6 136123859 136123980 -13393057 - L2c LINE L2 -5 3382 3258 2 1623 1263 94 0 0 chr6 136124030 136124210 -13392827 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1623 321 272 25 0 chr6 136126028 136126109 -13390928 - ID4 SINE ID 0 83 1 2 1623 246 185 28 97 chr6 136126117 136126189 -13390848 - B1F SINE Alu -2 147 81 2 1623 207 0 0 0 chr6 136126742 136126765 -13390272 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1623 315 290 191 28 chr6 136126770 136127199 -13389838 - Arthur1 DNA Tip100 -94 3853 3355 2 1623 549 289 44 78 chr6 136127235 136127554 -13389483 - Arthur1 DNA Tip100 -668 3279 2972 2 1623 1004 73 0 0 chr6 136127551 136127688 -13389349 + B1_Mus2 SINE Alu 11 147 0 2 1623 255 278 102 20 chr6 136127847 136127994 -13389043 - Arthur1 DNA Tip100 -1122 2825 2667 2 1623 618 210 96 24 chr6 136128011 136128177 -13388860 + B3A SINE B2 10 187 -11 2 1623 512 271 26 78 chr6 136128227 136128419 -13388618 + B4 SINE B4 98 279 -13 2 1623 1105 21 0 20 chr6 136128419 136128565 -13388472 + (GGAA)n Simple_repeat Simple_repeat 1 143 0 2 1623 351 0 0 0 chr6 136129439 136129478 -13387559 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1623 873 224 43 14 chr6 136129478 136129677 -13387360 - B3 SINE B2 -10 206 2 2 1623 189 0 0 0 chr6 136129696 136129717 -13387320 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1623 516 100 0 0 chr6 136130498 136130578 -13386459 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 1623 368 304 21 0 chr6 136131439 136131550 -13385487 - PB1D10 SINE Alu -1 116 4 2 1623 910 242 85 8 chr6 136131585 136131823 -13385214 - MTEa LTR MaLR 0 379 123 2 1623 1399 66 0 159 chr6 136131823 136132094 -13384943 + ORR1A2 LTR MaLR 1 228 -99 2 1623 457 276 32 0 chr6 136132086 136132209 -13384828 - MTEa LTR MaLR -252 127 1 2 1623 290 321 102 35 chr6 136132216 136132471 -13384566 - L1MC4 LINE L1 -504 7538 7267 2 1623 339 306 132 23 chr6 136132593 136132818 -13384219 + L1MC4 LINE L1 6621 6846 -1196 2 1623 457 268 43 25 chr6 136133475 136133636 -13383401 + RMER15 LTR ERVL 347 510 -65 2 1623 253 370 8 8 chr6 136133881 136134001 -13383036 + MLT1H LTR MaLR 106 225 -324 2 1623 343 238 59 0 chr6 136134371 136134479 -13382558 - PB1D10 SINE Alu -20 129 6 2 1623 216 0 0 0 chr6 136134842 136134866 -13382171 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 1623 216 310 93 7 chr6 136135116 136135261 -13381776 - MIR SINE MIR -88 180 25 2 1623 756 217 7 0 chr6 136135263 136135406 -13381631 + B1_Mur1 SINE Alu 4 147 -2 2 1623 275 0 0 28 chr6 136135421 136135457 -13381580 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1623 634 180 62 0 chr6 136135461 136135589 -13381448 - B1_Mus1 SINE Alu -1 147 12 2 1623 2711 167 28 16 chr6 136135837 136136337 -13380700 - RLTR19C LTR ERVK 0 506 1 2 1623 1400 81 4 1 chr6 136136371 136136567 -13380470 + L1Md_F3 LINE L1 5381 5585 -298 2 1623 8614 27 0 5 chr6 136136568 136137571 -13379466 + L1Md_F3 LINE L1 5587 6584 0 2 1623 724 260 50 58 chr6 136137593 136137834 -13379203 - ORR1E LTR MaLR -120 239 1 2 1623 208 274 204 30 chr6 136137835 136137853 -13379184 - MIR SINE MIR -100 162 145 2 1623 1081 250 17 126 chr6 136137853 136138274 -13378763 + MTE2a LTR MaLR 1 375 -4 2 1623 208 274 204 30 chr6 136138274 136138387 -13378650 - MIR SINE MIR -118 144 8 2 1623 1632 187 270 38 chr6 136138502 136139062 -13377975 - RMER6C LTR ERVK 0 690 1 2 1623 576 305 25 98 chr6 136139907 136140151 -13376886 + RMER15 LTR ERVL 337 562 -13 2 1623 266 280 28 18 chr6 136140480 136140589 -13376448 + PB1D10 SINE Alu 1 110 -7 2 1623 849 250 65 5 chr6 136140701 136140902 -13376135 + B3 SINE B2 2 214 -2 2 1623 21 0 0 0 chr6 136140903 136140924 -13376113 + AT_rich Low_complexity Low_complexity 1 21 0 2 1623 790 285 101 4 chr6 136141350 136141607 -13375430 + B4A SINE B4 11 292 0 2 1623 427 278 53 6 chr6 136141628 136141798 -13375239 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1623 232 343 114 0 chr6 136142028 136142133 -13374904 + B1F SINE Alu 1 117 -32 2 1623 306 0 0 0 chr6 136143181 136143215 -13373822 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1623 1145 204 161 7 chr6 136143234 136143544 -13373493 + ORR1D1 LTR MaLR 11 368 -6 2 1623 16071 161 46 11 chr6 136145458 136148198 -13368839 - MERVL_2A-int LTR ERVL -2310 3451 617 2 1623 963 202 93 118 chr6 136148199 136148577 -13368460 - MT2A LTR ERVL -118 483 1 2 1623 297 174 374 0 chr6 136148588 136148703 -13368334 - L1M2 LINE L1 -1593 4550 4393 2 1623 658 285 19 25 chr6 136148716 136148878 -13368159 - RSINE1 SINE B4 -2 163 3 2 1623 411 322 55 5 chr6 136148952 136149152 -13367885 - L1M2 LINE L1 -1751 4392 4183 2 1623 339 295 47 0 chr6 136149146 136149275 -13367762 + L1M2 LINE L1 4055 4189 -1951 2 1623 333 96 0 0 chr6 136149658 136149687 -13367350 + (GGGAGA)n Simple_repeat Simple_repeat 4 32 0 2 1623 1170 73 0 28 chr6 136149687 136149869 -13367168 + (AGGGGG)n Simple_repeat Simple_repeat 2 178 0 2 1623 333 96 0 0 chr6 136149869 136149891 -13367146 + (GGGAGA)n Simple_repeat Simple_repeat 3 24 0 2 1623 900 286 84 9 chr6 136149913 136150245 -13366792 + Lx8 LINE L1 7115 7471 -2 2 1623 1563 215 99 13 chr6 136150999 136151372 -13365665 + MTD LTR MaLR 1 405 -14 2 1623 325 312 94 79 chr6 136151600 136151661 -13365376 + ORR1E LTR MaLR 11 88 -271 2 1623 504 0 0 0 chr6 136151661 136151717 -13365320 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1623 325 312 94 79 chr6 136151717 136151962 -13365075 + ORR1E LTR MaLR 89 321 -38 2 1623 2090 153 56 28 chr6 136151962 136152319 -13364718 + ORR1B2 LTR MaLR 1 367 0 2 1623 325 312 94 79 chr6 136152319 136152341 -13364696 + ORR1E LTR MaLR 322 344 -15 2 1623 511 326 118 55 chr6 136152476 136152823 -13364214 - MTEa LTR MaLR -9 370 2 2 1623 390 289 249 24 chr6 136152879 136153088 -13363949 - B4 SINE B4 -30 262 7 2 1623 180 0 0 0 chr6 136153586 136153606 -13363431 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2 1623 3097 82 25 18 chr6 136153608 136154055 -13362982 - L1_Mus3 LINE L1 0 6638 6189 2 1623 1342 98 0 33 chr6 136154060 136154271 -13362766 + Lx LINE L1 6444 6647 -7 2 1623 22 0 0 0 chr6 136154710 136154732 -13362305 + AT_rich Low_complexity Low_complexity 1 22 0 2 1623 880 74 0 0 chr6 136154739 136154861 -13362176 + B1_Mm SINE Alu 26 147 0 2 1623 270 0 0 0 chr6 136154861 136154891 -13362146 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1623 294 29 0 0 chr6 136155455 136155490 -13361547 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1623 937 258 86 57 chr6 136156314 136156664 -13360373 - MTEa LTR MaLR -14 365 6 2 1623 255 269 10 79 chr6 136156669 136156770 -13360267 + L1MB7 LINE L1 6081 6174 -10 2 1623 374 306 25 14 chr6 136156958 136157208 -13359829 + MLT1D-int LTR MaLR 1 365 -1006 2 1623 679 115 0 0 chr6 136157209 136157313 -13359724 + B2_Mm2 SINE B2 50 153 -42 2 1623 483 18 0 0 chr6 136157313 136157369 -13359668 + (CATA)n Simple_repeat Simple_repeat 4 59 0 2 1623 1642 299 76 55 chr6 136157382 136158253 -13358784 + Lx9 LINE L1 6707 7595 -49 2 1623 31 26 0 0 chr6 136158286 136158324 -13358713 + AT_rich Low_complexity Low_complexity 1 38 0 2 1623 298 281 92 49 chr6 136158335 136158477 -13358560 + MLT1D-int LTR MaLR 359 506 -865 2 1623 1402 206 58 20 chr6 136158576 136158922 -13358115 - ORR1C2 LTR MaLR -25 359 1 2 1623 361 322 0 8 chr6 136158941 136159063 -13357974 + MLT1D-int LTR MaLR 649 769 -602 2 1623 417 345 123 13 chr6 136159306 136159673 -13357364 + MLT1D-int LTR MaLR 945 1174 -197 2 1623 251 273 129 34 chr6 136159722 136159900 -13357137 + MLT1D LTR MaLR 49 243 -262 2 1623 283 246 179 14 chr6 136159952 136160092 -13356945 + MLT1D LTR MaLR 340 502 -3 2 1623 285 51 0 0 chr6 136160704 136160743 -13356294 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1623 1160 269 55 35 chr6 136162021 136162418 -13354619 - MTD LTR MaLR -14 405 1 2 1623 1165 246 73 19 chr6 136162525 136162840 -13354197 + ORR1D2 LTR MaLR 39 370 0 2 1623 2430 133 21 5 chr6 136163134 136163518 -13353519 + ORR1B1 LTR MaLR 1 390 -4 2 1623 963 260 117 15 chr6 136163745 136164069 -13352968 + Lx8 LINE L1 7117 7473 0 2 1623 514 257 162 32 chr6 136164767 136165020 -13352017 + B4A SINE B4 5 290 -2 2 1623 189 241 0 0 chr6 136165043 136165097 -13351940 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1623 308 146 0 0 chr6 136165097 136165145 -13351892 + HAL1-3A_ME LINE L1 1976 2023 -835 2 1623 243 323 60 40 chr6 136165193 136165393 -13351644 - RMER15 LTR ERVL -12 563 360 2 1623 477 0 0 0 chr6 136165709 136165762 -13351275 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1623 437 304 24 8 chr6 136165772 136165898 -13351139 - Lx8 LINE L1 -312 7161 7034 2 1623 328 311 118 26 chr6 136166077 136166424 -13350613 - L1M4c LINE L1 -4727 2281 1903 2 1623 310 379 75 18 chr6 136166486 136166873 -13350164 - L1M4c LINE L1 -5589 1745 1337 2 1623 647 211 6 0 chr6 136166882 136167038 -13349999 + (CATATA)n Simple_repeat Simple_repeat 2 158 0 2 1623 21 0 0 0 chr6 136168150 136168171 -13348866 + AT_rich Low_complexity Low_complexity 1 21 0 2 1623 288 227 182 16 chr6 136169272 136169393 -13347644 - Lx5 LINE L1 0 7050 6910 2 1623 7464 151 22 14 chr6 136169419 136171129 -13345908 - Lx5 LINE L1 -133 6917 5214 2 1623 623 171 42 17 chr6 136171621 136171740 -13345297 + ORR1A2 LTR MaLR 119 240 -87 2 1623 1236 138 16 0 chr6 136171741 136171929 -13345108 + RMER1B Other Other 720 910 -156 2 1623 2614 147 20 0 chr6 136172084 136172478 -13344559 + Lx4A LINE L1 6524 6925 -133 2 1623 570 29 0 0 chr6 136172480 136172548 -13344489 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 2 1623 23 54 0 0 chr6 136172864 136172901 -13344136 + AT_rich Low_complexity Low_complexity 1 37 0 2 1623 654 242 23 0 chr6 136173143 136173275 -13343762 + B1_Mur4 SINE Alu 11 145 -5 2 1623 459 0 0 0 chr6 136173288 136173339 -13343698 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1623 273 259 46 33 chr6 136173342 136173494 -13343543 - MER33 DNA MER1_type -22 302 149 2 1623 3067 209 78 66 chr6 136173495 136173722 -13343315 - Lx7 LINE L1 0 7696 7448 3 1623 186 43 0 0 chr6 136173722 136173745 -13343292 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1623 3067 209 78 66 chr6 136173745 136174352 -13342685 - Lx7 LINE L1 -249 7447 6852 3 1623 367 322 13 7 chr6 136174442 136174592 -13342445 - MER33 DNA MER1_type -167 157 7 2 1623 717 255 52 31 chr6 136175360 136175554 -13341483 + ID_B1 SINE B4 10 207 -17 3 1623 498 75 0 0 chr6 136175841 136175908 -13341129 + (GGAGA)n Simple_repeat Simple_repeat 2 68 0 3 1623 1413 51 0 0 chr6 136175908 136176086 -13340951 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 3 1623 922 107 7 7 chr6 136176090 136176241 -13340796 + (GAAA)n Simple_repeat Simple_repeat 4 154 0 3 1623 985 272 66 26 chr6 136176257 136176634 -13340403 + L1MA5 LINE L1 5512 5903 -397 3 1623 440 245 62 20 chr6 136176633 136176779 -13340258 - Lx8 LINE L1 -309 7164 7013 3 1623 22 0 0 0 chr6 136177096 136177118 -13339919 + AT_rich Low_complexity Low_complexity 1 22 0 3 1623 258 227 0 0 chr6 136177181 136177225 -13339812 + RSINE1 SINE B4 108 151 -14 3 1623 669 272 72 72 chr6 136178137 136178482 -13338555 - MTEa LTR MaLR -33 346 2 3 1623 24 67 0 0 chr6 136178662 136178707 -13338330 + AT_rich Low_complexity Low_complexity 1 45 0 3 1623 515 333 0 0 chr6 136178754 136178889 -13338148 + ID_B1 SINE B4 86 220 -4 3 1623 609 155 0 0 chr6 136179011 136179114 -13337923 + MTC LTR MaLR 1 103 -318 3 1623 1358 188 41 20 chr6 136179213 136179506 -13337531 + MTC LTR MaLR 115 413 -8 3 1623 889 298 70 25 chr6 136179514 136179917 -13337120 + MLT1D LTR MaLR 60 480 -25 3 1623 322 316 117 31 chr6 136180330 136180526 -13336511 - MamRep605 Unknown Unknown -208 668 456 3 1623 183 42 0 0 chr6 136180655 136180679 -13336358 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1623 526 282 62 6 chr6 136181183 136181361 -13335676 + MLT2B1 LTR ERVL 1 188 -332 3 1623 363 299 22 73 chr6 136181365 136181502 -13335535 + MLT2B1 LTR ERVL 430 559 -8 3 1623 216 114 36 60 chr6 136181908 136181992 -13335045 + GA-rich Low_complexity Low_complexity 3 84 0 3 1623 253 292 42 0 chr6 136182017 136182113 -13334924 + L1MB2 LINE L1 5179 5278 -862 3 1623 275 232 42 95 chr6 136182116 136182211 -13334826 + ID_B1 SINE B4 135 224 0 3 1623 653 300 38 48 chr6 136182233 136182461 -13334576 + B4A SINE B4 4 233 -59 3 1623 2055 151 119 6 chr6 136182461 136182815 -13334222 + ORR1B1 LTR MaLR 1 394 0 3 1623 653 300 38 48 chr6 136182815 136182877 -13334160 + B4A SINE B4 234 291 -1 3 1623 342 0 0 0 chr6 136182888 136182926 -13334111 + (TAA)n Simple_repeat Simple_repeat 3 40 0 3 1623 1040 281 60 60 chr6 136182938 136183035 -13334002 + L1MB2 LINE L1 5332 5426 -757 3 1623 701 205 111 55 chr6 136183035 136183216 -13333821 + B3A SINE B2 2 192 -6 3 1623 1040 281 60 60 chr6 136183216 136183588 -13333449 + L1MB2 LINE L1 5427 5801 -382 3 202 315 220 40 45 chr6 136183660 136183905 -13333132 + (CACTA)n Simple_repeat Simple_repeat 1 243 0 3 1624 308 241 42 24 chr6 136183940 136184106 -13332931 + (CACTA)n Simple_repeat Simple_repeat 4 172 0 3 1624 282 206 62 31 chr6 136184118 136184248 -13332789 + (CACTA)n Simple_repeat Simple_repeat 4 137 0 3 1624 433 303 64 25 chr6 136184256 136184459 -13332578 + L1MB2 LINE L1 5834 6044 -127 3 1624 302 368 89 5 chr6 136185759 136185950 -13331087 + MIRc SINE MIR 2 208 -60 3 1624 524 254 27 34 chr6 136185986 136186133 -13330904 + B3A SINE B2 14 159 -39 3 1624 414 117 70 0 chr6 136186251 136186338 -13330699 + B1_Mur1 SINE Alu 1 135 -14 3 1624 21 0 0 0 chr6 136186862 136186883 -13330154 + AT_rich Low_complexity Low_complexity 1 21 0 3 1624 732 291 25 0 chr6 136186940 136187136 -13329901 + ID_B1 SINE B4 8 208 -16 3 1624 351 250 60 0 chr6 136187242 136187358 -13329679 - Tigger5 DNA MER2_type -2244 162 40 3 1624 297 254 133 26 chr6 136187388 136187501 -13329536 + MER3 DNA MER1_type 64 188 -21 3 1624 328 331 41 77 chr6 136187572 136187742 -13329295 + RSINE1 SINE B4 2 165 0 3 1624 750 23 0 0 chr6 136187754 136187842 -13329195 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 1624 338 238 28 56 chr6 136189549 136189656 -13327381 - ID4_ SINE ID -48 104 1 3 1624 340 284 42 56 chr6 136189668 136189810 -13327227 - B1F SINE Alu -5 144 5 3 1624 540 216 0 0 chr6 136190246 136190399 -13326638 + (CA)n Simple_repeat Simple_repeat 2 154 0 3 1624 1009 265 27 4 chr6 136192318 136192579 -13324458 + B4 SINE B4 3 269 -23 3 1624 414 0 0 0 chr6 136192587 136192633 -13324404 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1624 1085 259 74 15 chr6 136192731 136193056 -13323981 + ORR1E LTR MaLR 1 344 -15 3 1624 736 189 45 100 chr6 136193297 136193497 -13323540 - B3A SINE B2 -6 189 1 3 1624 189 0 0 0 chr6 136194127 136194148 -13322889 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 1624 309 306 0 0 chr6 136194583 136194668 -13322369 + RSINE1 SINE B4 8 92 -73 3 1624 441 54 0 0 chr6 136194718 136194774 -13322263 + (CATA)n Simple_repeat Simple_repeat 1 56 0 3 1624 599 282 42 137 chr6 136194847 136195250 -13321787 - MTEa LTR MaLR -8 371 7 3 1624 207 0 0 0 chr6 136195762 136195785 -13321252 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1624 299 276 13 0 chr6 136196587 136196663 -13320374 + B4A SINE B4 22 98 -194 3 1624 1763 161 101 22 chr6 136196663 136197019 -13320018 + RMER1A Other Other 644 1027 -3 3 1624 473 339 18 29 chr6 136197019 136197189 -13319848 + B4A SINE B4 82 249 -43 3 1624 284 297 30 0 chr6 136197226 136197327 -13319710 + (CATA)n Simple_repeat Simple_repeat 4 107 0 3 1624 864 169 0 0 chr6 136197687 136198018 -13319019 + (CA)n Simple_repeat Simple_repeat 1 331 0 3 1624 1153 99 17 24 chr6 136198857 136199153 -13317884 + (TAGA)n Simple_repeat Simple_repeat 1 293 0 3 1624 1743 56 5 0 chr6 136199316 136199532 -13317505 - L1_Mus3 LINE L1 -730 5908 5692 3 1624 2538 82 0 0 chr6 136199505 136199847 -13317190 - L1_Mm LINE L1 -1389 4494 4153 3 1624 5356 75 1 4 chr6 136199847 136200543 -13316494 + L1_Mus2 LINE L1 5873 6566 0 3 1624 815 115 0 23 chr6 136200585 136200718 -13316319 + B2_Mm1t SINE B2 50 179 -14 3 1624 343 108 9 34 chr6 136200784 136200852 -13316185 + B2_Mm2 SINE B2 47 116 -100 3 1624 325 316 52 10 chr6 136201882 136201978 -13315059 - B3A SINE B2 -16 182 83 3 1624 542 278 53 12 chr6 136202279 136202450 -13314587 + B3A SINE B2 4 181 -17 3 1624 324 0 0 0 chr6 136202514 136202550 -13314487 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1624 330 299 0 40 chr6 136202559 136202660 -13314377 + PB1D10 SINE Alu 21 117 0 3 1624 494 294 21 29 chr6 136202690 136202830 -13314207 + ID_B1 SINE B4 60 198 -26 3 1624 299 246 0 0 chr6 136202803 136202872 -13314165 + B1_Mur4 SINE Alu 66 134 -16 3 1624 389 93 27 0 chr6 136202875 136202950 -13314087 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 3 1624 1886 164 74 8 chr6 136203147 136203498 -13313539 - ORR1C1 LTR MaLR 0 378 5 3 1624 607 262 30 74 chr6 136203546 136203748 -13313289 + B3A SINE B2 6 198 0 3 1624 398 238 97 16 chr6 136203986 136203997 -13313040 - RSINE1 SINE B4 -29 136 127 3 1624 195 100 0 0 chr6 136203997 136204027 -13313010 + (CATG)n Simple_repeat Simple_repeat 1 30 0 3 1624 398 238 97 16 chr6 136204027 136204139 -13312898 - RSINE1 SINE B4 -39 126 3 3 1624 282 182 76 0 chr6 136204696 136204762 -13312275 - RMER13B LTR ERVK -773 135 65 3 1624 554 167 8 85 chr6 136204964 136205082 -13311955 - PB1D10 SINE Alu -8 109 1 3 1624 507 17 0 0 chr6 136205096 136205156 -13311881 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1624 261 196 0 0 chr6 136205234 136205290 -13311747 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1624 764 230 150 46 chr6 136205290 136205550 -13311487 - B4A SINE B4 0 292 6 3 1624 416 274 37 9 chr6 136206478 136206585 -13310452 + B1F SINE Alu 2 111 -38 3 1624 214 268 87 26 chr6 136206651 136206766 -13310271 - MIRb SINE MIR -8 260 139 3 1624 271 301 14 0 chr6 136206920 136206993 -13310044 - ID4_ SINE ID -8 75 2 3 1624 640 266 107 16 chr6 136207479 136207666 -13309371 - B3 SINE B2 -6 210 7 3 1624 21 36 0 0 chr6 136207695 136207723 -13309314 + AT_rich Low_complexity Low_complexity 1 28 0 3 1624 225 274 0 0 chr6 136207960 136208022 -13309015 - MLT1L LTR MaLR -9 601 540 3 1624 292 327 0 19 chr6 136209029 136209132 -13307905 + LTR33 LTR ERVL 415 515 0 3 1624 695 236 19 34 chr6 136209783 136209979 -13307058 - URR1A DNA MER1_type 0 226 13 3 1624 605 290 12 6 chr6 136210886 136211049 -13305988 + RSINE1 SINE B4 2 165 0 3 1624 375 185 0 15 chr6 136211199 136211265 -13305772 + ID4 SINE ID 3 67 -16 3 1624 2123 41 4 0 chr6 136212078 136212349 -13304688 + ORR1A2 LTR MaLR 56 327 0 3 1624 3020 252 48 23 chr6 136212350 136212658 -13304379 + Lx7 LINE L1 6485 6790 -906 3 1624 2628 102 64 72 chr6 136212658 136213144 -13303893 - RLTR45 LTR ERVK 0 482 1 3 1624 3020 252 48 23 chr6 136213144 136213651 -13303386 + Lx7 LINE L1 6791 7320 -376 3 1624 197 83 0 27 chr6 136213673 136213710 -13303327 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 3 1624 867 166 0 21 chr6 136213908 136214050 -13302987 + B1_Mur4 SINE Alu 1 139 -11 3 1624 459 252 152 148 chr6 136214111 136214544 -13302493 + RMER10A LTR ERVL 8 442 0 3 1624 542 296 88 48 chr6 136214669 136214896 -13302141 - MTEa LTR MaLR -114 265 30 3 1624 1280 274 88 17 chr6 136214910 136215415 -13301622 - MTEa-int LTR MaLR -2 1578 949 3 1624 261 0 0 0 chr6 136215415 136215444 -13301593 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1624 382 333 129 14 chr6 136215444 136215475 -13301562 - MTEa-int LTR MaLR -632 948 917 3 1624 3699 68 6 0 chr6 136215480 136215951 -13301086 - L1_Mus4 LINE L1 -500 6136 5663 3 1624 3445 106 14 17 chr6 136215961 136216613 -13300424 - L1_Mus3 LINE L1 -759 5879 5314 3 1624 8866 78 8 6 chr6 136216612 136218330 -13298707 - L1VL4 LINE L1 -1469 2090 369 3 1624 2122 298 115 13 chr6 136218330 136218485 -13298552 - MTEa-int LTR MaLR -648 932 779 3 1624 2953 173 13 6 chr6 136218485 136219008 -13298029 + RLTR11A2 LTR ERVK 1 527 0 3 1624 2122 298 115 13 chr6 136219008 136219698 -13297339 - MTEa-int LTR MaLR -802 778 1 3 1624 593 275 179 16 chr6 136219703 136220010 -13297027 - MTEa LTR MaLR -4 375 19 3 1624 290 315 65 0 chr6 136220303 136220395 -13296642 + B1F1 SINE Alu 6 103 -46 3 1624 826 119 28 7 chr6 136221079 136221198 -13295839 + L1_Mus1 LINE L1 5919 6041 -526 3 1624 824 49 195 0 chr6 136221198 136221321 -13295716 + L1_Mus1 LINE L1 6420 6566 -1 3 1624 826 119 28 7 chr6 136221321 136221345 -13295692 + L1_Mus1 LINE L1 6042 6065 -502 3 1624 586 194 18 55 chr6 136221502 136221532 -13295505 + ID_B1 SINE B4 65 222 -2 3 1624 1045 37 0 0 chr6 136221532 136221666 -13295371 + B1_Mus2 SINE Alu 12 145 -2 3 1624 23 0 0 0 chr6 136221673 136221696 -13295341 + AT_rich Low_complexity Low_complexity 1 23 0 4 1624 2423 79 28 0 chr6 136221964 136222282 -13294755 + ORR1A2 LTR MaLR 1 327 0 4 1624 449 329 80 20 chr6 136222420 136222721 -13294316 + L1MD2 LINE L1 677 995 -5552 4 1624 253 235 85 12 chr6 136222732 136222814 -13294223 + MLT1F2 LTR MaLR 3 90 -458 4 1624 425 320 124 18 chr6 136222939 136223165 -13293872 + MLT1F2 LTR MaLR 307 556 -4 4 1624 225 292 0 0 chr6 136223286 136223351 -13293686 + L1M2 LINE L1 5607 5671 -641 4 1624 655 116 16 0 chr6 136223639 136223760 -13293277 + (TATG)n Simple_repeat Simple_repeat 2 124 0 4 1624 603 235 85 0 chr6 136223761 136223914 -13293123 - B3 SINE B2 -48 168 3 4 1624 665 201 169 22 chr6 136224019 136224202 -13292835 + B3 SINE B2 1 210 -6 4 1624 408 242 55 96 chr6 136224476 136224622 -13292415 + MTEa LTR MaLR 225 364 -15 4 1624 267 256 151 0 chr6 136224645 136224731 -13292306 + MLT1H1 LTR MaLR 434 532 -23 4 1624 188 328 74 25 chr6 136225051 136225173 -13291864 - L2 LINE L2 -2047 1372 1245 4 1624 708 230 50 65 chr6 136225447 136225647 -13291390 + B3A SINE B2 2 198 0 4 1624 582 28 0 0 chr6 136225686 136225758 -13291279 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 1624 317 224 0 0 chr6 136226364 136226431 -13290606 - L1M4 LINE L1 -1290 4856 4790 4 1624 513 268 100 24 chr6 136226434 136226644 -13290393 - MER2 DNA MER2_type -118 227 2 4 1624 2314 173 39 10 chr6 136226744 136227153 -13289884 + MTC LTR MaLR 1 421 0 4 1624 268 43 43 0 chr6 136227709 136227755 -13289282 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1624 909 127 0 0 chr6 136228071 136228228 -13288809 + (TG)n Simple_repeat Simple_repeat 1 157 0 4 1624 247 267 80 59 chr6 136228277 136228464 -13288573 + L1MB7 LINE L1 1203 1393 -4849 4 1624 198 263 0 0 chr6 136228470 136228527 -13288510 + (CAGAT)n Simple_repeat Simple_repeat 1 57 0 4 1624 946 269 139 42 chr6 136228543 136229409 -13287628 + L1MB7 LINE L1 4819 5763 -410 4 1624 746 267 0 0 chr6 136229634 136229814 -13287223 + B3A SINE B2 3 182 -16 4 1624 297 109 0 0 chr6 136229816 136229862 -13287175 + (CATA)n Simple_repeat Simple_repeat 1 46 0 4 1624 435 182 46 76 chr6 136229896 136230027 -13287010 + L1MB7 LINE L1 6058 6184 0 4 1624 331 278 107 2 chr6 136230586 136230724 -13286313 + MLT2B4 LTR ERVL 24 173 -342 4 1624 333 289 54 15 chr6 136230895 136231025 -13286012 + B1F SINE Alu 10 144 -5 4 1624 446 291 0 0 chr6 136230909 136231026 -13286011 + ID_B1 SINE B4 104 220 -4 4 1624 671 240 0 46 chr6 136231057 136231210 -13285827 + RSINE1 SINE B4 20 165 0 4 1624 665 296 5 0 chr6 136231244 136231430 -13285607 + U2 snRNA snRNA 1 187 -1 4 1624 338 218 34 11 chr6 136231671 136231759 -13285278 + RSINE1 SINE B4 38 127 -38 4 1624 1100 253 40 18 chr6 136232190 136232516 -13284521 + L1M3 LINE L1 2129 2461 -3679 4 1624 906 177 122 11 chr6 136232521 136232709 -13284328 + B3 SINE B2 8 216 0 4 1624 302 312 21 41 chr6 136232728 136232825 -13284212 + PB1D10 SINE Alu 1 95 -22 4 1624 218 226 16 0 chr6 136232858 136232920 -13284117 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 1624 192 152 0 0 chr6 136232920 136232953 -13284084 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1624 2380 178 139 24 chr6 136233615 136233718 -13283319 - Lx9 LINE L1 -7 7637 7484 4 1624 723 24 0 0 chr6 136233718 136233803 -13283234 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 1624 2380 178 139 24 chr6 136233803 136234281 -13282756 - Lx9 LINE L1 -161 7483 6991 4 1624 870 166 0 0 chr6 136234295 136234440 -13282597 + B1_Mur4 SINE Alu 6 150 0 4 1624 292 329 31 82 chr6 136234300 136234459 -13282578 + B4A SINE B4 95 245 -47 4 1624 225 65 0 0 chr6 136234460 136234491 -13282546 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 1624 243 238 0 16 chr6 136234603 136234667 -13282370 - MTEb LTR MaLR -23 356 294 4 1624 281 297 28 62 chr6 136234893 136235060 -13281977 + L1M5 LINE L1 5558 5719 -725 4 1624 291 308 82 7 chr6 136235450 136235597 -13281440 + MLT1H LTR MaLR 385 542 -7 4 1624 304 262 186 16 chr6 136235821 136235945 -13281092 - ID_B1 SINE B4 -7 217 73 4 1624 516 178 119 0 chr6 136235980 136236081 -13280956 - B1_Mur1 SINE Alu -31 118 6 4 1624 564 232 57 46 chr6 136236980 136237174 -13279863 + B3A SINE B2 3 198 0 4 1624 459 291 78 11 chr6 136237471 136237662 -13279375 - ERVL-int LTR ERVL -5371 386 183 4 1624 330 156 15 59 chr6 136237736 136237804 -13279233 + RSINE1 SINE B4 60 124 -41 4 1624 270 0 0 0 chr6 136237804 136237834 -13279203 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1624 1629 152 103 21 chr6 136238117 136238447 -13278590 + ORR1B2 LTR MaLR 1 357 -10 4 1624 310 267 22 0 chr6 136238537 136238627 -13278410 - B4A SINE B4 -95 197 106 4 1624 381 196 216 7 chr6 136238640 136238779 -13278258 - MTD LTR MaLR -14 405 238 4 1624 193 118 19 19 chr6 136238889 136238941 -13278096 + T-rich Low_complexity Low_complexity 2 53 0 4 1624 829 74 8 8 chr6 136239480 136239603 -13277434 + (TTCC)n Simple_repeat Simple_repeat 3 125 0 4 1624 192 152 0 0 chr6 136239608 136239641 -13277396 + CT-rich Low_complexity Low_complexity 4 36 0 4 1624 3533 23 2 0 chr6 136239674 136240069 -13276968 - MTA_Mm LTR MaLR 0 396 1 4 1624 9114 37 7 4 chr6 136240069 136241163 -13275874 - MTA_Mm-int LTR MaLR 0 1098 1 4 1624 3515 25 2 0 chr6 136241163 136241558 -13275479 - MTA_Mm LTR MaLR 0 396 1 4 1624 787 255 10 0 chr6 136241558 136241750 -13275287 - B3 SINE B2 -22 194 1 4 1624 518 262 10 86 chr6 136241763 136241972 -13275065 - MLT2C1 LTR ERVL -161 236 44 4 1624 527 309 6 32 chr6 136242964 136243121 -13273916 + B4A SINE B4 78 230 -62 4 1624 822 238 43 19 chr6 136243121 136243331 -13273706 + B3 SINE B2 2 216 0 4 1624 496 251 104 10 chr6 136243464 136243665 -13273372 + L1MA6 LINE L1 6081 6300 0 4 1624 456 253 80 6 chr6 136243660 136243835 -13273202 + L1MD LINE L1 2896 3083 -3063 4 1624 260 280 18 27 chr6 136243901 136244011 -13273026 + B3 SINE B2 107 215 -1 4 1624 374 271 140 56 chr6 136244020 136244270 -13272767 + L1M5 LINE L1 3073 3343 -2803 4 1624 249 317 125 39 chr6 136244443 136244778 -13272259 + RLTR12B LTR ERVK 136 499 -29 4 1624 333 93 19 0 chr6 136244789 136244843 -13272194 - URR1B DNA MER1_type -8 217 163 4 1624 1354 130 5 5 chr6 136244858 136245074 -13271963 - URR1B DNA MER1_type -9 216 1 4 1624 311 222 108 93 chr6 136245115 136245254 -13271783 + L1MD LINE L1 3415 3555 -2591 4 1624 525 238 13 59 chr6 136245256 136245408 -13271629 + ID_B1 SINE B4 80 224 0 4 1624 252 296 37 0 chr6 136245412 136245493 -13271544 + L1MD LINE L1 3588 3671 -2475 4 1624 905 151 0 0 chr6 136245499 136245645 -13271392 + B1_Mus1 SINE Alu 1 146 -2 4 1624 459 0 0 0 chr6 136245645 136245696 -13271341 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1624 476 273 68 12 chr6 136245870 136246033 -13271004 + ORR1E LTR MaLR 10 181 -178 4 1624 686 281 83 17 chr6 136246178 136246529 -13270508 + L1MD LINE L1 3794 4167 -1979 4 1624 909 290 49 49 chr6 136246544 136247034 -13270003 + L1MD LINE L1 4230 4719 -1427 4 1624 284 310 57 57 chr6 136247341 136247587 -13269450 + L1MD LINE L1 4768 5013 -1133 4 1624 652 255 14 20 chr6 136247592 136247740 -13269297 + B1_Mur1 SINE Alu 3 149 0 4 1624 398 309 95 14 chr6 136247862 136248205 -13268832 + L1MD LINE L1 5065 5750 -492 4 1624 950 260 60 77 chr6 136248260 136248285 -13268752 + MTE2b LTR MaLR 18 42 -337 4 1624 835 171 203 0 chr6 136248285 136248472 -13268565 + URR1B DNA MER1_type 1 225 0 4 1624 950 260 60 77 chr6 136248472 136248766 -13268271 + MTE2b LTR MaLR 43 324 -55 4 1624 1886 125 5 126 chr6 136248766 136249140 -13267897 + ORR1A4 LTR MaLR 1 329 0 4 1624 950 260 60 77 chr6 136249140 136249185 -13267852 + MTE2b LTR MaLR 325 376 -3 4 1624 486 234 145 0 chr6 136249312 136249436 -13267601 + B3A SINE B2 9 150 -48 4 1624 1447 236 69 23 chr6 136249478 136249868 -13267169 + MTD LTR MaLR 12 419 0 4 1624 231 282 14 14 chr6 136249953 136250025 -13267012 + CT-rich Low_complexity Low_complexity 1 72 0 4 1624 707 315 21 4 chr6 136250106 136250339 -13266698 - MLT1A0 LTR MaLR -76 289 53 4 1624 399 127 0 0 chr6 136250378 136250441 -13266596 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1624 386 311 0 0 chr6 136250452 136250555 -13266482 - PB1D10 SINE Alu -14 103 1 4 1624 323 239 70 44 chr6 136250867 136250981 -13266056 - RMER15 LTR ERVL -88 487 371 4 1624 180 77 0 0 chr6 136251243 136251269 -13265768 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1624 1472 269 6 3 chr6 136251282 136251633 -13265404 + ORR1D2 LTR MaLR 1 352 -18 4 1624 252 295 0 13 chr6 136252230 136252309 -13264728 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1624 291 284 100 83 chr6 136252794 136253024 -13264013 - B4 SINE B4 -10 282 49 4 1624 222 37 0 0 chr6 136253048 136253075 -13263962 + (CTTTG)n Simple_repeat Simple_repeat 3 29 0 4 1624 255 272 0 0 chr6 136253901 136253982 -13263055 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 1624 421 257 114 9 chr6 136254900 136255014 -13262023 + ID_B1 SINE B4 93 218 -6 4 1624 31 26 0 0 chr6 136255016 136255054 -13261983 + AT_rich Low_complexity Low_complexity 1 38 0 4 1624 734 217 40 0 chr6 136255334 136255486 -13261551 + L1MA5 LINE L1 6143 6300 0 4 1624 643 301 123 15 chr6 136256892 136257232 -13259805 + MLT1C LTR MaLR 59 435 -32 4 1624 543 261 198 44 chr6 136257675 136257968 -13259069 - MLT1F LTR MaLR -84 464 127 4 1624 431 295 12 69 chr6 136257979 136258139 -13258898 + RSINE1 SINE B4 12 162 -3 4 1624 370 260 28 46 chr6 136258192 136258301 -13258736 + PB1D10 SINE Alu 5 111 -6 4 1624 2638 99 2 82 chr6 136258341 136258803 -13258234 + RLTR23 LTR ERV1 6 430 0 4 1624 349 268 0 0 chr6 136259254 136259336 -13257701 + B3 SINE B2 1 82 -134 4 1624 356 233 272 0 chr6 136259401 136259566 -13257471 + B3 SINE B2 7 216 0 4 1624 277 288 74 33 chr6 136259651 136259773 -13257264 + RSINE1 SINE B4 15 141 -24 4 1624 411 56 0 0 chr6 136259773 136259827 -13257210 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1624 320 269 3 2 chr6 136259949 136260018 -13257019 + B1F SINE Alu 17 86 -228 4 1624 337 246 0 0 chr6 136260038 136260107 -13256930 + B3 SINE B2 7 75 -141 4 1624 248 200 0 16 chr6 136260228 136260289 -13256748 + GA-rich Low_complexity Low_complexity 2 61 0 4 1624 456 51 0 0 chr6 136260515 136260574 -13256463 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1624 624 48 0 0 chr6 136260574 136260657 -13256380 + (GA)n Simple_repeat Simple_repeat 1 84 0 5 1624 1849 116 7 11 chr6 136261039 136261326 -13255711 + ORR1A2 LTR MaLR 3 288 -39 5 1624 19880 63 0 3 chr6 136261326 136263857 -13253180 + L1Md_F2 LINE L1 3062 5586 -297 5 1624 8261 40 2 4 chr6 136263857 136264841 -13252196 + L1Md_F2 LINE L1 5587 6568 -14 5 1624 195 42 0 0 chr6 136264845 136264869 -13252168 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1624 180 0 0 0 chr6 136264887 136264907 -13252130 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1624 346 64 0 0 chr6 136264907 136264954 -13252083 + ORR1A2 LTR MaLR 340 386 -8 5 1624 202 273 0 0 chr6 136264958 136265002 -13252035 + MIR SINE MIR 108 151 -57 5 1624 567 0 0 0 chr6 136265226 136265289 -13251748 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1624 303 316 172 54 chr6 136265310 136265531 -13251506 - B4A SINE B4 -18 274 28 5 1624 1625 195 50 19 chr6 136265613 136265990 -13251047 + MTD LTR MaLR 30 418 -1 5 1624 312 91 0 0 chr6 136266061 136266105 -13250932 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1624 727 278 116 28 chr6 136266108 136266580 -13250457 - L1M2 LINE L1 -589 5723 5169 5 1624 215 241 130 98 chr6 136266580 136266764 -13250273 - B2_Mm2 SINE B2 -3 192 3 5 1624 2453 143 48 17 chr6 136266941 136267355 -13249682 + RLTR11A LTR ERVK 31 456 -72 5 1624 441 0 0 0 chr6 136267355 136267404 -13249633 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1624 2453 143 48 17 chr6 136267404 136267472 -13249565 + RLTR11A LTR ERVK 457 527 -1 5 1624 621 268 78 23 chr6 136267657 136267875 -13249162 - L1M2 LINE L1 -1136 5007 4778 5 1624 6697 65 3 3 chr6 136268213 136269095 -13247942 - MusHAL1 LINE L1 -1 2711 1830 5 1624 376 211 44 0 chr6 136269160 136269250 -13247787 + ID_B1 SINE B4 116 209 -15 5 1624 213 291 106 10 chr6 136269250 136269264 -13247773 + B1F SINE Alu 35 148 -1 5 1624 376 270 30 10 chr6 136269541 136269642 -13247395 + PB1D10 SINE Alu 1 103 -14 5 1624 196 402 52 0 chr6 136269692 136269789 -13247248 + L4 LINE RTE 1472 1573 -456 5 1624 397 209 65 21 chr6 136269993 136270086 -13246951 + B1_Mur2 SINE Alu 3 99 -50 5 1624 4425 73 15 1 chr6 136271487 136272483 -13244554 + MusHAL1 LINE L1 274 1277 -2076 5 1624 777 98 0 0 chr6 136272493 136272605 -13244432 + (GA)n Simple_repeat Simple_repeat 2 113 0 5 1624 633 128 0 0 chr6 136272608 136272710 -13244327 + (GGGGA)n Simple_repeat Simple_repeat 2 103 0 5 1624 648 223 7 0 chr6 136272742 136272881 -13244156 - MTD LTR MaLR -279 140 1 5 1624 314 264 45 11 chr6 136272871 136272959 -13244078 + PB1 SINE Alu 1 91 -36 5 1624 1164 181 118 74 chr6 136273103 136273466 -13243571 - ORR1C2 LTR MaLR -5 379 1 5 1624 470 256 0 0 chr6 136273501 136273622 -13243415 + B3 SINE B2 10 130 -86 5 1624 34 0 0 0 chr6 136273655 136273689 -13243348 + AT_rich Low_complexity Low_complexity 1 34 0 5 1624 815 94 147 8 chr6 136273696 136273825 -13243212 + B1_Mm SINE Alu 1 147 0 5 1624 207 0 0 0 chr6 136273829 136273852 -13243185 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1624 554 252 0 8 chr6 136273864 136273988 -13243049 + B1F2 SINE Alu 16 138 -11 5 1624 882 130 0 0 chr6 136273988 136274142 -13242895 + (TGGA)n Simple_repeat Simple_repeat 3 156 0 5 1624 950 9 18 0 chr6 136274148 136274262 -13242775 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 5 1624 211 280 0 0 chr6 136274409 136274459 -13242578 + GA-rich Low_complexity Low_complexity 4 53 0 5 1624 429 161 53 7 chr6 136274946 136275096 -13241941 + GA-rich Low_complexity Low_complexity 1 157 0 5 1624 222 218 18 18 chr6 136275096 136275152 -13241885 + G-rich Low_complexity Low_complexity 2 57 0 5 1624 712 159 3 54 chr6 136275154 136275473 -13241564 + GA-rich Low_complexity Low_complexity 1 302 0 5 1624 286 244 8 102 chr6 136276127 136276255 -13240782 - RMER10B LTR ERVL -82 316 201 5 1624 3466 70 4 0 chr6 136276255 136276738 -13240299 + MusHAL1 LINE L1 415 899 -1813 5 1624 5655 126 83 44 chr6 136276768 136277276 -13239761 + Lx2 LINE L1 5494 6078 -919 5 1624 3474 82 21 6 chr6 136277276 136277744 -13239293 + MT2C_Mm LTR ERVL 1 475 0 5 1624 5691 115 102 42 chr6 136277744 136278327 -13238710 + Lx2 LINE L1 6079 6643 -354 5 1624 1267 119 35 0 chr6 136278327 136278529 -13238508 + Lx2 LINE L1 6775 6983 -14 5 1624 33 25 0 0 chr6 136280033 136280073 -13236964 + AT_rich Low_complexity Low_complexity 1 40 0 5 1624 413 129 0 23 chr6 136280079 136280166 -13236871 + L1Md_F2 LINE L1 6498 6582 0 5 1624 186 43 0 0 chr6 136280174 136280197 -13236840 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1624 317 125 21 0 chr6 136280293 136280341 -13236696 + B2_Mm2 SINE B2 2 50 -145 5 1624 463 264 0 98 chr6 136280347 136280490 -13236547 + Lx8 LINE L1 7165 7293 -180 5 1624 336 274 219 13 chr6 136280591 136280746 -13236291 + ID_B1 SINE B4 10 196 -28 5 1624 256 206 333 14 chr6 136280747 136280885 -13236152 - L1_Mur2 LINE L1 -1609 4271 4090 5 1624 1233 0 0 0 chr6 136281141 136281278 -13235759 + (GAAA)n Simple_repeat Simple_repeat 2 138 0 5 1624 387 0 0 0 chr6 136281278 136281321 -13235716 + (GGGA)n Simple_repeat Simple_repeat 1 43 0 5 1624 1060 91 12 12 chr6 136281321 136281488 -13235549 + (GAAA)n Simple_repeat Simple_repeat 4 170 0 5 1624 801 0 0 0 chr6 136281488 136281577 -13235460 + (GGGGA)n Simple_repeat Simple_repeat 3 91 0 5 1624 706 259 29 10 chr6 136282313 136282520 -13234517 + B3 SINE B2 1 211 -5 5 1624 469 262 10 12 chr6 136283427 136283540 -13233497 + B1F1 SINE Alu 1 111 -6 5 1624 206 200 0 35 chr6 136283544 136283601 -13233436 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 5 1624 1031 62 7 0 chr6 136283613 136283757 -13233280 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 5 1624 936 173 0 0 chr6 136284324 136284503 -13232534 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 5 1624 2868 109 50 113 chr6 136284841 136285398 -13231639 + RLTR28 LTR ERVL 1 522 -2 5 1624 194 338 43 14 chr6 136285757 136285826 -13231211 - MIR SINE MIR -116 146 76 5 1624 5522 31 14 0 chr6 136286835 136287484 -13229553 - L1Md_F3 LINE L1 -2 6582 5925 5 1624 484 289 18 71 chr6 136287817 136287846 -13229191 + ID_B1 SINE B4 66 222 0 5 1624 619 226 58 0 chr6 136287846 136287983 -13229054 + B1F SINE Alu 5 149 0 5 1624 756 190 7 21 chr6 136288287 136288427 -13228610 - B1_Mur4 SINE Alu -2 148 11 5 1624 393 241 111 76 chr6 136288314 136288458 -13228579 - MT2B LTR ERVL -323 278 130 5 1624 1408 214 55 19 chr6 136288565 136289075 -13227962 + Lx9 LINE L1 7096 7644 0 5 1624 402 222 55 147 chr6 136289248 136289406 -13227631 + B3A SINE B2 1 143 -55 5 1624 605 0 47 0 chr6 136289406 136289491 -13227546 + (TC)n Simple_repeat Simple_repeat 2 90 0 5 1624 402 245 122 34 chr6 136289491 136289508 -13227529 + B3A SINE B2 144 163 -35 5 1624 917 253 129 31 chr6 136289511 136289829 -13227208 - MTEa LTR MaLR -30 349 1 5 1624 247 214 235 17 chr6 136290273 136290392 -13226645 + L1MA8 LINE L1 6143 6287 -4 5 1624 3188 51 26 3 chr6 136291365 136291756 -13225281 + MTB LTR MaLR 1 400 0 5 1624 321 100 0 0 chr6 136291810 136291860 -13225177 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1624 515 282 175 25 chr6 136291870 136292110 -13224927 - B4A SINE B4 -8 284 9 5 1624 753 269 34 42 chr6 136292109 136292346 -13224691 - B4A SINE B4 -57 235 1 5 1624 534 221 0 0 chr6 136292375 136292470 -13224567 - B1F1 SINE Alu -54 95 1 5 1624 302 321 64 50 chr6 136292470 136292516 -13224521 - B4 SINE B4 -108 184 42 5 1624 250 235 15 0 chr6 136292717 136292785 -13224252 - ID4 SINE ID -13 70 2 5 1624 268 248 60 95 chr6 136292904 136293020 -13224017 + B3A SINE B2 86 197 -1 5 1624 1125 60 0 0 chr6 136293029 136293163 -13223874 + B1_Mus1 SINE Alu 2 135 -13 5 1624 315 0 0 0 chr6 136293171 136293206 -13223831 + (TAA)n Simple_repeat Simple_repeat 2 36 0 5 1624 303 28 0 0 chr6 136293321 136293357 -13223680 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1624 550 200 0 0 chr6 136293447 136293542 -13223495 - B1F1 SINE Alu -54 95 1 5 1624 192 306 165 0 chr6 136293679 136293764 -13223273 + MIRc SINE MIR 55 153 -115 5 1624 200 163 23 0 chr6 136293899 136293942 -13223095 + GA-rich Low_complexity Low_complexity 2 45 0 5 1624 480 260 10 0 chr6 136294304 136294408 -13222629 + PB1D10 SINE Alu 13 117 0 5 1624 362 221 105 9 chr6 136294413 136294518 -13222519 + RSINE1 SINE B4 16 130 -35 5 1624 207 179 26 0 chr6 136294526 136294565 -13222472 + G-rich Low_complexity Low_complexity 4 43 0 5 1624 356 320 78 31 chr6 136294702 136294831 -13222206 - B1F1 SINE Alu -13 136 2 5 1624 358 282 58 25 chr6 136294889 136295009 -13222028 + RSINE1 SINE B4 9 132 -33 5 1624 261 0 0 0 chr6 136295731 136295760 -13221277 + (TGG)n Simple_repeat Simple_repeat 1 29 0 5 1624 994 208 26 57 chr6 136295760 136295989 -13221048 - ID_B1 SINE B4 0 224 3 5 1624 216 0 49 49 chr6 136296165 136296206 -13220831 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 5 1624 1428 63 21 21 chr6 136296533 136296726 -13220311 - B2_Mm2 SINE B2 -2 193 1 5 1624 372 292 89 25 chr6 136297399 136297557 -13219480 - MIRc SINE MIR -1 267 100 5 1624 831 230 167 127 chr6 136297642 136297996 -13219041 - MTE2b LTR MaLR -11 368 1 5 1624 246 302 156 0 chr6 136298432 136298528 -13218509 - PB1D10 SINE Alu -6 111 1 5 1624 193 326 56 11 chr6 136298553 136298643 -13218394 + MIR3 SINE MIR 93 186 -22 5 1624 235 318 30 0 chr6 136298709 136298775 -13218262 + PB1D10 SINE Alu 13 80 -37 5 1624 270 0 0 0 chr6 136298775 136298805 -13218232 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1624 424 286 7 0 chr6 136298894 136299010 -13218027 - B1F SINE Alu 0 120 1 5 1624 478 281 19 20 chr6 136299198 136299360 -13217677 + L1M4 LINE L1 5298 5457 -699 6 1624 189 0 0 0 chr6 136299480 136299501 -13217536 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1624 262 218 193 11 chr6 136299517 136299605 -13217432 + ID_B1 SINE B4 120 223 -1 6 1624 733 261 84 48 chr6 136299991 136300241 -13216796 + MLT1A1 LTR MaLR 148 406 -2 6 1624 525 216 0 126 chr6 136300481 136300624 -13216413 + B1_Mus1 SINE Alu 1 125 -23 6 1624 432 220 55 0 chr6 136300789 136300880 -13216157 - PB1D10 SINE Alu -21 96 1 6 1624 275 323 30 10 chr6 136300793 136300893 -13216144 - B4A SINE B4 -117 175 74 6 1624 900 236 41 25 chr6 136301241 136301437 -13215600 - ID_B1 SINE B4 -24 200 2 6 1624 206 400 51 70 chr6 136301489 136301645 -13215392 + MIR3 SINE MIR 49 201 -7 6 1624 816 260 38 24 chr6 136301836 136302049 -13214988 + B3 SINE B2 1 216 0 6 1624 1338 231 91 0 chr6 136302229 136302527 -13214510 + MLT2D LTR ERVL 8 332 -82 6 1624 1267 116 20 23 chr6 136302553 136303239 -13213798 + (TAGA)n Simple_repeat Simple_repeat 1 683 0 6 1624 502 272 9 124 chr6 136304032 136304250 -13212787 + B3A SINE B2 5 197 -1 6 1624 536 256 88 0 chr6 136304617 136304754 -13212283 + RSINE1 SINE B4 3 151 -14 6 1624 486 0 0 0 chr6 136304755 136304809 -13212228 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1624 974 241 226 26 chr6 136305049 136305638 -13211399 + RMER1B Other Other 162 1324 -18 6 1624 780 269 34 15 chr6 136305928 136306132 -13210905 - B3 SINE B2 -6 210 3 6 1624 385 107 53 0 chr6 136306591 136306666 -13210371 + CT-rich Low_complexity Low_complexity 4 82 0 6 1624 1867 252 77 15 chr6 136306690 136307210 -13209827 - Lx8 LINE L1 -529 6944 6393 6 1624 227 315 78 52 chr6 136307295 136307449 -13209588 + ORR1E LTR MaLR 180 337 -22 6 1624 239 328 104 45 chr6 136307745 136307879 -13209158 + YREP_Mm Unknown Unknown 155 296 -1516 6 1624 496 248 23 31 chr6 136307768 136307897 -13209140 - ID_B1 SINE B4 -11 213 86 6 1624 288 311 85 0 chr6 136308073 136308179 -13208858 + PB1D10 SINE Alu 3 117 0 6 1624 307 303 0 6 chr6 136308179 136308281 -13208756 + ID4 SINE ID 4 103 -49 6 1624 237 156 22 0 chr6 136309252 136309297 -13207740 + B2_Mm2 SINE B2 11 56 -139 6 1624 630 283 46 11 chr6 136309402 136309577 -13207460 + B3A SINE B2 1 181 -17 6 1624 273 255 0 0 chr6 136309742 136309793 -13207244 + RMER1B Other Other 35 85 -981 6 1624 872 266 97 4 chr6 136309794 136310032 -13207005 + RMER1B Other Other 55 314 -752 6 1624 4382 181 30 74 chr6 136310037 136310820 -13206217 + RMER1B Other Other 181 935 -131 6 1624 180 0 0 0 chr6 136310820 136310840 -13206197 + (TGG)n Simple_repeat Simple_repeat 1 20 0 6 1624 4382 181 30 74 chr6 136310840 136310977 -13206060 + RMER1B Other Other 936 1061 -5 6 1624 1136 143 21 21 chr6 136310978 136311164 -13205873 + B2_Mm2 SINE B2 1 186 -9 6 1624 225 324 40 0 chr6 136311387 136311461 -13205576 + MamGypLTR1b LTR Gypsy 639 715 -67 6 1624 813 286 95 65 chr6 136312073 136312132 -13204905 - MT2A LTR ERVL -7 526 482 6 1624 764 199 0 41 chr6 136312132 136312279 -13204758 - B1_Mur3 SINE Alu -7 142 2 6 1624 813 286 95 65 chr6 136312279 136312586 -13204451 - MT2A LTR ERVL -52 481 149 6 1624 504 0 0 0 chr6 136312586 136312642 -13204395 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1624 1207 178 90 9 chr6 136312685 136312918 -13204119 - MTD LTR MaLR -167 252 1 6 1624 1687 206 97 0 chr6 136313007 136313346 -13203691 + RLTR14 LTR ERV1 11 382 0 6 1624 603 217 229 0 chr6 136313510 136313685 -13203352 - B3 SINE B2 0 216 2 6 1625 761 139 299 28 chr6 136315081 136315258 -13201779 + URR1B DNA MER1_type 1 225 0 6 1625 1197 62 0 0 chr6 136316358 136316499 -13200538 + B1_Mus1 SINE Alu 1 141 -7 6 1625 444 51 0 0 chr6 136316499 136316558 -13200479 + (CATA)n Simple_repeat Simple_repeat 4 62 0 6 1625 1638 36 0 5 chr6 136316671 136316865 -13200172 + B2_Mm1a SINE B2 1 193 0 6 1625 249 261 0 0 chr6 136316933 136316998 -13200039 + L1ME1 LINE L1 5997 6061 -118 6 1625 195 139 0 0 chr6 136317080 136317116 -13199921 + (CACCC)n Simple_repeat Simple_repeat 1 36 0 6 1625 331 341 7 58 chr6 136317381 136317518 -13199519 + RMER10B LTR ERVL 269 398 0 6 1625 7381 132 7 2 chr6 136318743 136319981 -13197056 - Lx LINE L1 -8 6646 5377 6 1625 3743 41 11 0 chr6 136319981 136320422 -13196615 - L1_Mus1 LINE L1 0 6567 6122 6 1625 5950 178 34 3 chr6 136320422 136321087 -13195950 - Lx LINE L1 -501 5376 4701 6 1625 873 259 0 30 chr6 136321108 136321307 -13195730 + MTD LTR MaLR 10 202 -217 6 1625 831 242 20 64 chr6 136321314 136321517 -13195520 + B3 SINE B2 1 194 -1 6 1625 459 187 291 41 chr6 136321516 136321687 -13195350 + MTD LTR MaLR 186 417 -2 6 1625 332 208 40 11 chr6 136321687 136321776 -13195261 - MTEa LTR MaLR 0 379 284 6 1625 250 226 177 31 chr6 136321768 136321864 -13195173 - MTEa LTR MaLR -248 111 2 6 1625 349 313 36 52 chr6 136321864 136322003 -13195034 + MLT1A0 LTR MaLR 230 365 0 6 1625 613 221 0 0 chr6 136322108 136322212 -13194825 - PB1D9 SINE Alu -5 115 12 6 1625 253 283 97 39 chr6 136322331 136322434 -13194603 + PB1D10 SINE Alu 9 117 0 6 1625 806 238 0 24 chr6 136322407 136322575 -13194462 + ID_B1 SINE B4 60 223 -1 6 1625 287 225 242 32 chr6 136322663 136322787 -13194250 + B4A SINE B4 2 151 -141 6 1625 321 268 38 75 chr6 136323045 136323178 -13193859 + B4A SINE B4 165 292 0 6 1625 201 217 43 14 chr6 136323183 136323253 -13193784 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 1625 4076 142 133 73 chr6 136323909 136324760 -13192277 + RMER19B LTR ERVK 1 902 0 6 1625 212 189 0 51 chr6 136324919 136324997 -13192040 + CT-rich Low_complexity Low_complexity 2 75 0 6 1625 455 274 0 53 chr6 136325045 136325176 -13191861 - ID_B1 SINE B4 -19 205 82 6 1625 810 0 0 0 chr6 136325187 136325277 -13191760 + (TC)n Simple_repeat Simple_repeat 1 90 0 6 1625 2449 144 10 5 chr6 136325334 136325725 -13191312 + ORR1B1 LTR MaLR 2 394 0 6 1625 5938 173 75 78 chr6 136325725 136327137 -13189900 + ORR1B1-int LTR MaLR 13 1422 -87 6 1625 2902 85 12 24 chr6 136327137 136327549 -13189488 - MTB_Mm LTR MaLR 0 407 1 6 1625 3384 140 136 65 chr6 136327549 136328298 -13188739 - MTB_Mm-int LTR MaLR 0 1258 456 6 1625 252 289 11 88 chr6 136328298 136328389 -13188648 + RMER16 LTR ERVK 3 86 -447 6 1625 7683 111 8 6 chr6 136328390 136329482 -13187555 + RMER16-int LTR ERVK 4209 5303 -103 6 1625 554 135 9 7 chr6 136329539 136329640 -13187397 + RMER16-int LTR ERVK 5330 5406 0 6 1625 1991 215 109 10 chr6 136329640 136330125 -13186912 + RMER16 LTR ERVK 1 533 0 6 1625 1631 152 11 103 chr6 136330125 136330760 -13186277 - ORR1A2-int LTR MaLR -793 465 1 6 1625 2433 87 16 0 chr6 136330760 136331082 -13185955 - ORR1A2 LTR MaLR 0 327 1 6 1625 2609 133 4 24 chr6 136331082 136331532 -13185505 + ORR1B1 LTR MaLR 5 386 -8 6 1625 2378 67 16 22 chr6 136331580 136331931 -13185106 - ORR1A2 LTR MaLR -8 386 2 6 1625 356 356 33 26 chr6 136332281 136332462 -13184575 + L2a LINE L2 3192 3425 -1 6 1625 774 273 83 65 chr6 136332666 136332877 -13184160 + B4A SINE B4 2 231 -61 6 1625 1897 124 30 150 chr6 136332877 136333343 -13183694 - RMER17C LTR ERVK 0 410 1 6 1625 774 273 83 65 chr6 136333343 136333409 -13183628 + B4A SINE B4 232 284 -8 6 1625 428 254 35 35 chr6 136333548 136333662 -13183375 + PB1D10 SINE Alu 1 114 -3 6 1625 22 0 0 0 chr6 136333666 136333688 -13183349 + AT_rich Low_complexity Low_complexity 1 22 0 6 1625 207 69 0 0 chr6 136333742 136333771 -13183266 + (CTG)n Simple_repeat Simple_repeat 1 29 0 6 1625 274 274 0 0 chr6 136335306 136335368 -13181669 + G-rich Low_complexity Low_complexity 1 62 0 6 1625 431 179 0 11 chr6 136335380 136335468 -13181569 + B3 SINE B2 1 84 -114 6 1625 229 348 91 44 chr6 136335588 136335949 -13181088 - L1MD LINE L1 -1847 4299 3922 6 1625 1056 113 0 0 chr6 136336002 136336144 -13180893 + B1_Mus1 SINE Alu 2 143 -5 6 1625 459 0 0 0 chr6 136336144 136336195 -13180842 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 1625 894 19 0 0 chr6 136336195 136336299 -13180738 + (GAAAA)n Simple_repeat Simple_repeat 5 108 0 6 1625 712 83 9 9 chr6 136336299 136336409 -13180628 + (GGGA)n Simple_repeat Simple_repeat 2 111 0 6 1625 383 247 11 86 chr6 136336440 136336533 -13180504 - RSINE1 SINE B4 -71 94 9 6 1625 781 236 17 28 chr6 136336557 136336736 -13180301 - ID_B1 SINE B4 -5 219 43 6 1625 451 141 22 0 chr6 136336811 136336903 -13180134 + GA-rich Low_complexity Low_complexity 2 95 0 6 1625 873 278 114 36 chr6 136337133 136337626 -13179411 - L1MC LINE L1 -2713 3433 2903 6 1625 264 167 0 0 chr6 136337724 136337772 -13179265 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1625 241 324 147 40 chr6 136337773 136338072 -13178965 - L1M4 LINE L1 -3419 2727 2397 6 1625 309 303 13 58 chr6 136338129 136338283 -13178754 + Lx6 LINE L1 7283 7429 -31 6 1625 448 212 206 63 chr6 136338306 136338432 -13178605 + B3 SINE B2 30 173 -43 6 1625 1473 195 65 122 chr6 136339183 136339626 -13177411 + MTD LTR MaLR 2 419 0 6 1625 559 255 22 7 chr6 136339921 136340059 -13176978 + B1F SINE Alu 10 149 0 6 1625 431 223 47 37 chr6 136340333 136340440 -13176597 + ORR1E LTR MaLR 1 108 -251 6 1625 406 245 94 0 chr6 136340537 136340643 -13176394 + ORR1E LTR MaLR 251 366 -13 6 1625 423 0 0 0 chr6 136340806 136340853 -13176184 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 6 1625 456 274 0 49 chr6 136340860 136340983 -13176054 + PB1D7 SINE Alu 3 119 -1 6 1625 1174 92 0 0 chr6 136341058 136341211 -13175826 + B2_Mm2 SINE B2 2 154 -41 6 1625 444 37 0 0 chr6 136341212 136341266 -13175771 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 6 1625 797 200 80 6 chr6 136341434 136341610 -13175427 - B3 SINE B2 -5 211 23 6 1625 516 229 10 0 chr6 136342014 136342110 -13174927 + PB1D10 SINE Alu 1 97 -20 6 1625 886 134 17 0 chr6 136342149 136342321 -13174716 + GA-rich Low_complexity Low_complexity 1 175 0 6 1625 370 290 122 0 chr6 136342955 136343086 -13173951 - RSINE1 SINE B4 -17 148 2 6 1625 434 308 37 47 chr6 136343168 136343359 -13173678 + B3A SINE B2 2 190 -8 6 1625 25 75 0 0 chr6 136343479 136343532 -13173505 + AT_rich Low_complexity Low_complexity 1 53 0 6 1625 409 218 73 113 chr6 136343578 136343598 -13173439 + B1_Mm SINE Alu 4 20 -127 7 1625 1349 85 0 36 chr6 136343598 136343793 -13173244 - B2_Mm2 SINE B2 -7 188 1 7 1625 409 218 73 113 chr6 136343793 136343922 -13173115 + B1_Mm SINE Alu 21 147 0 7 1625 470 175 155 0 chr6 136343941 136344038 -13172999 + PB1D9 SINE Alu 1 112 -8 7 1625 252 200 0 0 chr6 136344063 136344118 -13172919 + GA-rich Low_complexity Low_complexity 4 58 0 7 1625 378 222 12 36 chr6 136344134 136344218 -13172819 - B3A SINE B2 -116 82 1 7 1625 183 42 0 0 chr6 136344227 136344251 -13172786 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1625 272 132 0 0 chr6 136344265 136344303 -13172734 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 7 1625 391 319 74 121 chr6 136344486 136344612 -13172425 - MLT1H-int LTR MaLR -856 553 446 7 1625 2246 158 18 15 chr6 136344612 136345005 -13172032 + ORR1B1 LTR MaLR 1 394 0 7 1625 391 319 74 121 chr6 136345005 136345217 -13171820 - MLT1H-int LTR MaLR -964 445 233 7 1625 402 286 11 0 chr6 136345205 136345296 -13171741 + PB1D10 SINE Alu 13 104 -13 7 1625 922 184 37 48 chr6 136345297 136345485 -13171552 + B3 SINE B2 3 188 -28 7 1625 1322 118 0 5 chr6 136345669 136345857 -13171180 + B2_Mm2 SINE B2 2 188 -7 7 1625 610 189 43 64 chr6 136345939 136346080 -13170957 - B1_Mus1 SINE Alu -10 138 1 7 1625 717 119 34 8 chr6 136346124 136346243 -13170794 - B3A SINE B2 -75 123 2 7 1625 268 154 0 0 chr6 136346252 136346304 -13170733 + T-rich Low_complexity Low_complexity 1 52 0 7 1625 236 179 43 43 chr6 136346306 136346376 -13170661 + PB1D10 SINE Alu 48 117 0 7 1625 1453 282 55 55 chr6 136346567 136347096 -13169941 + RMER5 LTR ERV1 5 533 -1 7 1625 2131 142 78 0 chr6 136347830 136348188 -13168849 + ORR1B1 LTR MaLR 1 386 -8 7 1625 242 73 0 24 chr6 136350331 136350373 -13166664 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 7 1625 396 253 72 0 chr6 136352118 136352201 -13164836 - PB1D10 SINE Alu -28 89 1 7 1625 352 323 62 0 chr6 136352201 136352214 -13164823 - ID_B1 SINE B4 -54 170 69 7 1625 591 243 43 35 chr6 136352239 136352380 -13164657 + B1F SINE Alu 8 149 0 7 1625 820 247 86 5 chr6 136352385 136352572 -13164465 + B3 SINE B2 2 203 -13 7 1625 591 53 0 0 chr6 136352585 136352660 -13164377 + (GGGGA)n Simple_repeat Simple_repeat 4 78 0 7 1625 655 225 8 0 chr6 136352692 136352821 -13164216 - MTD LTR MaLR -279 140 11 7 1625 333 214 129 35 chr6 136352821 136352937 -13164100 + PB1 SINE Alu 1 127 0 7 1625 1370 180 109 74 chr6 136353053 136353419 -13163618 - ORR1C2 LTR MaLR -5 379 1 7 1625 503 248 0 0 chr6 136353454 136353575 -13163462 + B3 SINE B2 10 130 -86 7 1625 28 29 0 0 chr6 136353607 136353642 -13163395 + AT_rich Low_complexity Low_complexity 1 35 0 7 1625 1206 55 0 7 chr6 136353649 136353797 -13163240 + B1_Mm SINE Alu 1 147 0 7 1625 617 224 8 39 chr6 136353819 136353949 -13163088 + B1_Mur1 SINE Alu 15 140 -9 7 1625 706 193 6 6 chr6 136353949 136354126 -13162911 + (TGGG)n Simple_repeat Simple_repeat 4 180 0 7 1625 465 66 0 0 chr6 136354147 136354208 -13162829 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 7 1625 218 328 0 0 chr6 136354336 136354403 -13162634 + GA-rich Low_complexity Low_complexity 4 70 0 7 1625 756 94 44 30 chr6 136354892 136355425 -13161612 + GA-rich Low_complexity Low_complexity 1 540 0 7 1625 1606 146 3 82 chr6 136355938 136356281 -13160756 - RMER10B LTR ERVL -82 316 1 7 1625 1669 42 0 0 chr6 136356927 136357119 -13159918 - B2_Mm1t SINE B2 0 193 2 7 1625 576 0 0 0 chr6 136357146 136357210 -13159827 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 1625 675 161 0 0 chr6 136357211 136357391 -13159646 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1625 5561 91 12 29 chr6 136357594 136358159 -13158878 + L1VL4 LINE L1 201 768 -5534 7 1625 1103 57 50 0 chr6 136358159 136358299 -13158738 + B1_Mus2 SINE Alu 1 147 0 7 1625 276 30 0 0 chr6 136358301 136358334 -13158703 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 7 1625 621 0 0 0 chr6 136358334 136358402 -13158635 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 7 1625 1191 81 0 0 chr6 136358402 136358574 -13158463 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 7 1625 6007 60 42 11 chr6 136358574 136359529 -13157508 + L1VL4 LINE L1 769 1746 -1813 7 1625 6705 129 19 18 chr6 136359559 136360371 -13156666 + Lx2 LINE L1 5494 6307 -690 7 1625 219 36 0 0 chr6 136360371 136360399 -13156638 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1625 6705 124 21 15 chr6 136360399 136360732 -13156305 + Lx2 LINE L1 6308 6643 -354 7 1625 1230 144 26 22 chr6 136360732 136360959 -13156078 + Lx LINE L1 6427 6654 0 7 1625 29 47 0 0 chr6 136360981 136361024 -13156013 + AT_rich Low_complexity Low_complexity 1 43 0 7 1625 379 144 0 82 chr6 136361028 136361126 -13155911 + L1Md_F3 LINE L1 6495 6584 0 7 1625 1390 124 0 0 chr6 136361238 136361432 -13155605 + B2_Mm2 SINE B2 2 195 0 7 1625 1960 155 13 132 chr6 136361596 136362065 -13154972 - MTC LTR MaLR -8 413 1 7 1625 662 111 9 9 chr6 136362066 136362175 -13154862 - MTC-int LTR MaLR -1 1257 1149 7 1625 2250 154 8 6 chr6 136362175 136362533 -13154504 + ORR1B2 LTR MaLR 1 359 -8 7 1625 470 162 16 163 chr6 136362531 136362715 -13154322 - MTC-int LTR MaLR -100 1158 1002 7 1625 993 84 28 0 chr6 136362716 136362859 -13154178 + B1_Mm SINE Alu 1 147 0 7 1625 770 119 0 56 chr6 136362862 136363183 -13153854 + GA-rich Low_complexity Low_complexity 1 302 0 7 1625 1114 63 0 39 chr6 136363183 136363365 -13153672 + (GGAAA)n Simple_repeat Simple_repeat 3 177 0 7 1625 1521 59 0 0 chr6 136363367 136363726 -13153311 + (GAAAA)n Simple_repeat Simple_repeat 1 359 0 7 1625 4979 165 70 19 chr6 136363730 136364683 -13152354 - MTC-int LTR MaLR -255 1003 2 7 1625 868 153 38 6 chr6 136364682 136364840 -13152197 - MTC LTR MaLR 0 421 259 7 1625 422 216 206 8 chr6 136364830 136364956 -13152081 - MTC LTR MaLR -270 151 1 7 1625 255 217 0 0 chr6 136365700 136365760 -13151277 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 1625 351 352 49 0 chr6 136365800 136365922 -13151115 + ID_B1 SINE B4 80 207 -17 7 1625 1163 107 0 6 chr6 136365927 136366106 -13150931 + (GAAAA)n Simple_repeat Simple_repeat 3 180 0 7 1625 286 297 50 92 chr6 136366128 136366269 -13150768 + B2_Mm2 SINE B2 61 195 0 7 1625 477 145 0 0 chr6 136366332 136366401 -13150636 + U4 snRNA snRNA 1 69 -76 7 1625 459 273 71 22 chr6 136366514 136366690 -13150347 - ID_B1 SINE B4 -120 172 3 7 1625 314 212 136 26 chr6 136367151 136367272 -13149765 - RMER10A LTR ERVL -13 429 292 7 1625 1098 29 22 28 chr6 136367272 136367452 -13149585 + (GA)n Simple_repeat Simple_repeat 2 180 0 7 1625 314 212 136 26 chr6 136367452 136367485 -13149552 - RMER10A LTR ERVL -151 291 258 7 1625 557 272 94 0 chr6 136368212 136368444 -13148593 + L1M2 LINE L1 5452 5710 -581 7 1625 286 117 377 17 chr6 136368453 136368572 -13148465 - B2_Mm2 SINE B2 -6 189 28 7 1625 1288 96 6 17 chr6 136368596 136368776 -13148261 - B2_Mm1t SINE B2 -14 179 2 7 1625 719 196 208 0 chr6 136368898 136369071 -13147966 + B3 SINE B2 1 209 -7 7 1625 1141 136 6 11 chr6 136369091 136369269 -13147768 + B2_Mm2 SINE B2 1 177 -18 7 1625 1102 184 159 47 chr6 136369295 136369552 -13147485 - MTB_Mm LTR MaLR -112 295 10 7 1625 308 336 44 44 chr6 136369532 136369691 -13147346 - ORR1E LTR MaLR -191 168 10 7 1625 362 335 79 82 chr6 136369750 136370066 -13146971 + ORR1E LTR MaLR 6 320 -39 7 1625 1132 203 86 97 chr6 136370158 136370508 -13146529 - ORR1E LTR MaLR -2 357 12 7 1625 591 251 28 28 chr6 136371226 136371406 -13145631 - B3A SINE B2 -16 182 3 7 1625 465 289 16 0 chr6 136371653 136371774 -13145263 + ID_B1 SINE B4 79 201 -23 7 1625 690 318 27 2 chr6 136371853 136372113 -13144924 + B4 SINE B4 1 272 -20 7 1625 387 41 0 0 chr6 136372137 136372186 -13144851 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1625 590 223 49 8 chr6 136372189 136372311 -13144726 - RSINE1 SINE B4 -36 129 3 7 1625 304 196 168 38 chr6 136372321 136372473 -13144564 - B2_Mm2 SINE B2 -8 187 1 7 1625 1162 117 12 0 chr6 136372477 136372648 -13144389 - B2_Mm1t SINE B2 -19 174 2 7 1625 513 0 0 0 chr6 136373135 136373192 -13143845 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1625 370 301 95 16 chr6 136373323 136373512 -13143525 + MER20 DNA MER1_type 12 215 -4 7 1625 239 318 87 43 chr6 136374091 136374229 -13142808 - RLTR20A LTR ERVK -386 155 12 7 1625 1028 184 39 10 chr6 136374345 136374548 -13142489 - URR1A DNA MER1_type -17 209 1 7 1625 216 258 106 61 chr6 136374898 136374964 -13142073 + ID4 SINE ID 9 77 -6 7 1625 391 246 218 0 chr6 136374916 136375026 -13142011 + ID_B1 SINE B4 29 162 -62 7 1625 276 200 0 0 chr6 136375031 136375091 -13141946 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1625 1311 7 0 0 chr6 136375129 136375277 -13141760 + (GAGAA)n Simple_repeat Simple_repeat 4 151 0 7 1625 716 281 37 26 chr6 136375282 136375456 -13141581 + B3A SINE B2 2 181 -17 7 1625 396 0 0 0 chr6 136375456 136375500 -13141537 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1625 716 281 37 26 chr6 136375500 136375515 -13141522 + B3A SINE B2 182 193 -5 7 1625 1439 70 27 0 chr6 136375518 136375705 -13141332 + B2_Mm1a SINE B2 1 192 -1 7 1625 248 368 28 73 chr6 136375989 136376168 -13140869 - LTR33 LTR ERVL -332 183 13 7 1625 22 0 0 0 chr6 136376792 136376814 -13140223 + AT_rich Low_complexity Low_complexity 1 22 0 7 1625 432 111 14 0 chr6 136376892 136376964 -13140073 + B1_Mus1 SINE Alu 3 75 -73 7 1625 348 116 69 42 chr6 136377218 136377290 -13139747 + B1_Mus2 SINE Alu 72 145 -2 7 1625 225 154 0 0 chr6 136377323 136377362 -13139675 + C-rich Low_complexity Low_complexity 1 39 0 7 1625 781 244 54 5 chr6 136377386 136377571 -13139466 + ID_B1 SINE B4 14 207 -17 7 1625 696 56 0 0 chr6 136377571 136377660 -13139377 + (GGGA)n Simple_repeat Simple_repeat 2 90 0 7 1625 292 294 26 68 chr6 136377748 136377865 -13139172 - B1F SINE Alu 0 149 38 7 1625 301 220 204 70 chr6 136377979 136378016 -13139021 + B3A SINE B2 1 32 -166 7 1625 1763 189 98 87 chr6 136378016 136378455 -13138582 + RLTR41 LTR ERV1 1 444 -2 8 1625 301 261 168 70 chr6 136378455 136378621 -13138416 + B3A SINE B2 33 212 -4 7 1625 1191 55 0 0 chr6 136378647 136378792 -13138245 + B1_Mus2 SINE Alu 1 145 -2 8 1625 1011 112 0 0 chr6 136378792 136378944 -13138093 + (GAAA)n Simple_repeat Simple_repeat 2 153 0 8 1625 3129 47 200 9 chr6 136379042 136379472 -13137565 - RLTR1B LTR ERV1 0 512 1 8 1625 321 313 41 122 chr6 136379648 136379847 -13137190 - LTR16D2 LTR ERVL 0 675 468 8 1625 294 297 119 35 chr6 136379916 136380059 -13136978 - LTR16D2 LTR ERVL -321 251 97 8 1625 1033 212 33 87 chr6 136380113 136380412 -13136625 + RMER6B LTR ERVK 177 459 -2 8 1625 21 0 0 0 chr6 136380660 136380681 -13136356 + AT_rich Low_complexity Low_complexity 1 21 0 8 1625 528 122 0 0 chr6 136380780 136380862 -13136175 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 8 1625 961 223 48 0 chr6 136381304 136381510 -13135527 + B3 SINE B2 1 216 0 8 1625 1194 28 28 0 chr6 136381531 136381674 -13135363 + B1_Mm SINE Alu 1 147 0 8 1625 225 61 0 0 chr6 136381674 136381685 -13135352 + (TAA)n Simple_repeat Simple_repeat 1 11 0 8 1625 342 0 0 0 chr6 136381685 136381723 -13135314 + (TTA)n Simple_repeat Simple_repeat 3 40 0 8 1625 225 61 0 0 chr6 136381723 136381744 -13135293 + (TAA)n Simple_repeat Simple_repeat 3 23 0 8 1625 1485 63 26 5 chr6 136381955 136382145 -13134892 + B2_Mm2 SINE B2 2 195 0 8 1625 297 254 210 63 chr6 136382190 136382333 -13134704 - MER63A DNA AcHobo -27 183 20 8 1625 1212 73 0 0 chr6 136382648 136382855 -13134182 + (CA)n Simple_repeat Simple_repeat 1 207 0 8 1625 514 294 99 21 chr6 136383278 136383469 -13133568 + MER21B LTR ERV1 284 489 -374 8 1625 764 176 84 0 chr6 136383470 136383601 -13133436 + B1_Mur1 SINE Alu 1 142 -7 8 1625 464 245 0 0 chr6 136383620 136383714 -13133323 + B1_Mur4 SINE Alu 1 94 -56 8 1625 468 178 34 93 chr6 136383714 136383832 -13133205 + RMER20A LTR ERVK 332 442 -74 8 1625 678 293 69 30 chr6 136384190 136384581 -13132456 + RLTR6-int LTR ERV1 4935 5315 -2463 8 1625 2284 98 192 109 chr6 136384614 136385093 -13131944 - MURVY-LTR LTR ERV1 0 519 1 8 1625 1532 317 40 77 chr6 136385093 136385221 -13131816 - RLTR6-int LTR ERV1 0 7778 7685 8 1625 1280 85 79 0 chr6 136385221 136385382 -13131655 + B2_Mm2 SINE B2 2 176 -19 8 1625 495 0 0 0 chr6 136385382 136385437 -13131600 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 8 1625 1280 85 79 0 chr6 136385437 136385452 -13131585 + B2_Mm2 SINE B2 177 191 -4 8 1625 1532 317 40 77 chr6 136385452 136386447 -13130590 - RLTR6-int LTR ERV1 -94 7684 6697 8 1625 6081 279 11 16 chr6 136386569 136388273 -13128764 - MuRRS4-int LTR ERV1 -788 4275 2581 8 1625 6722 286 40 51 chr6 136388270 136391552 -13125485 - MMERGLN-int LTR ERV1 -4160 3396 3 8 1625 2960 124 9 97 chr6 136391552 136392121 -13124916 - MURVY-LTR LTR ERV1 0 519 1 8 1625 297 170 0 0 chr6 136392549 136392602 -13124435 + RLTR6-int LTR ERV1 4765 4817 -500 8 1625 838 289 56 59 chr6 136392843 136393295 -13123742 + RLTR14-int LTR ERV1 4510 5293 -24 8 1625 285 252 60 112 chr6 136393678 136393697 -13123340 + RLTR14 LTR ERV1 233 245 -137 8 1625 1091 75 0 27 chr6 136393697 136393847 -13123190 - B1_Mus2 SINE Alu 0 147 2 8 1625 285 252 60 112 chr6 136393847 136393943 -13123094 + RLTR14 LTR ERV1 246 342 -40 8 1625 447 280 102 129 chr6 136393984 136394070 -13122967 + B4 SINE B4 2 78 -214 8 1625 794 104 26 0 chr6 136394070 136394185 -13122852 - PB1D9 SINE Alu 0 120 3 8 1625 1110 106 135 0 chr6 136394190 136394360 -13122677 - B2_Mm2 SINE B2 -1 194 2 8 1625 447 280 102 129 chr6 136394360 136394490 -13122547 + B4 SINE B4 79 217 -75 8 1625 207 0 0 0 chr6 136394490 136394513 -13122524 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1625 447 280 102 129 chr6 136394513 136394584 -13122453 + B4 SINE B4 218 288 -4 8 1625 558 0 0 0 chr6 136394599 136394661 -13122376 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1625 405 0 0 0 chr6 136394661 136394705 -13122332 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1625 3157 14 0 0 chr6 136394809 136395153 -13121884 - ORR1A0 LTR MaLR 0 346 3 8 1625 13833 50 6 1 chr6 136395155 136396929 -13120108 - ORR1A0-int LTR MaLR 0 1792 11 8 1625 1737 24 0 0 chr6 136396928 136397134 -13119903 + ORR1A1-int LTR MaLR 1141 1346 -446 8 1625 3068 26 9 0 chr6 136397135 136397478 -13119559 - ORR1A0 LTR MaLR 0 346 1 8 1625 322 96 11 78 chr6 136397659 136397749 -13119288 + GA-rich Low_complexity Low_complexity 3 86 0 8 1625 22 0 0 0 chr6 136398215 136398237 -13118800 + AT_rich Low_complexity Low_complexity 1 22 0 8 1625 222 62 0 0 chr6 136398254 136398286 -13118751 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1625 1035 269 141 36 chr6 136398296 136398659 -13118378 + MTD LTR MaLR 5 405 -14 8 1625 1287 288 202 35 chr6 136398740 136399481 -13117556 + Lx8 LINE L1 6369 7233 -240 8 1625 293 374 0 0 chr6 136399481 136399572 -13117465 + RMER15 LTR ERVL 371 461 -114 8 1625 255 31 0 0 chr6 136399877 136399909 -13117128 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 1625 4400 170 37 42 chr6 136400285 136401196 -13115841 - RMER13B LTR ERVK 0 908 2 8 1625 475 341 26 21 chr6 136401981 136402215 -13114822 - MMERGLN-int LTR ERV1 -188 5129 4895 8 1625 255 318 58 82 chr6 136402310 136402553 -13114484 - RLTR19-int LTR ERVK -130 6007 5771 8 1625 268 261 29 0 chr6 136402793 136402862 -13114175 - MuRRS-int LTR ERV1 -2093 2597 2527 8 1625 503 316 69 39 chr6 136402878 136403436 -13113601 - MMERGLN-int LTR ERV1 -3949 3829 3165 8 1625 200 128 26 0 chr6 136403495 136403534 -13113503 + A-rich Low_complexity Low_complexity 5 44 0 8 1625 369 296 78 96 chr6 136403542 136404278 -13112759 - MMERGLN-int LTR ERV1 -2053 2637 2074 8 1625 804 89 319 0 chr6 136404681 136404816 -13112221 + B2_Mm2 SINE B2 2 179 -16 8 1625 455 369 29 23 chr6 136404892 136405200 -13111837 - MMERGLN-int LTR ERV1 -3444 1619 1310 8 1625 313 231 113 19 chr6 136405502 136405608 -13111429 - RMER16-int LTR ERVK -4980 426 311 8 1625 1629 47 0 0 chr6 136406350 136406541 -13110496 + B2_Mm1t SINE B2 3 193 0 8 1625 1006 25 8 0 chr6 136406682 136406804 -13110233 + B2_Mm2 SINE B2 2 124 -71 8 1625 701 144 0 0 chr6 136406806 136406910 -13110127 - B1_Mus1 SINE Alu -15 133 30 8 1625 551 288 27 0 chr6 136407090 136407236 -13109801 - ID_B1 SINE B4 -4 220 71 8 1625 1156 35 0 21 chr6 136407292 136407436 -13109601 - B1_Mus2 SINE Alu -6 141 1 8 1625 432 168 124 21 chr6 136407750 136407847 -13109190 + RMER17C LTR ERVK 304 410 0 8 1625 227 333 0 0 chr6 136408026 136408095 -13108942 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 8 1625 537 214 102 8 chr6 136408165 136408292 -13108745 + B1_Mur1 SINE Alu 11 149 0 8 1625 342 0 0 0 chr6 136408658 136408696 -13108341 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1625 698 172 0 0 chr6 136408702 136408818 -13108219 - RSINE1 SINE B4 -49 116 1 8 1625 479 291 160 39 chr6 136409670 136409977 -13107060 + MT2A LTR ERVL 1 344 -189 8 1625 1274 20 0 7 chr6 136409994 136410141 -13106896 + B1_Mus2 SINE Alu 2 147 0 8 1625 1201 108 42 16 chr6 136411336 136411525 -13105512 + B2_Mm2 SINE B2 1 194 -1 8 1625 1073 31 0 0 chr6 136411525 136411653 -13105384 + B1_Mm SINE Alu 20 147 0 8 1625 443 260 35 126 chr6 136412140 136412338 -13104699 + ID_B1 SINE B4 25 204 -20 8 1625 195 69 0 0 chr6 136412533 136412562 -13104475 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 8 1625 231 265 11 98 chr6 136412562 136412646 -13104391 - 4.5SRNA scRNA scRNA -7 87 9 8 1625 323 289 0 0 chr6 136412564 136412654 -13104383 - B1F1 SINE Alu -58 91 2 8 1625 343 180 16 16 chr6 136412845 136412907 -13104130 + MIRc SINE MIR 68 129 -139 8 1625 372 261 72 106 chr6 136413210 136413230 -13103807 + B4 SINE B4 79 154 -138 8 1625 676 197 31 16 chr6 136413230 136413359 -13103678 + B1_Mur2 SINE Alu 14 144 -5 8 1625 372 261 72 106 chr6 136413359 136413379 -13103658 + B4 SINE B4 155 241 -51 8 1625 333 286 152 0 chr6 136413455 136413560 -13103477 + B1F SINE Alu 21 141 -8 8 1625 288 236 143 93 chr6 136413655 136413795 -13103242 + B1F SINE Alu 1 147 -2 8 1625 484 310 33 76 chr6 136413798 136414102 -13102935 + B4A SINE B4 2 292 0 8 1625 547 294 7 0 chr6 136414210 136414290 -13102747 + ID SINE ID 3 83 -141 8 1625 221 255 210 60 chr6 136414290 136414390 -13102647 + PB1D10 SINE Alu 3 117 0 8 1625 352 222 119 20 chr6 136415646 136415747 -13101290 - ID_B1 SINE B4 -1 223 113 8 1625 180 0 0 0 chr6 136416831 136416851 -13100186 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 8 1625 274 341 17 94 chr6 136418460 136418641 -13098396 - MIRb SINE MIR -62 206 40 8 1625 283 274 64 73 chr6 136418670 136418780 -13098257 - L2b LINE L2 -16 3359 3251 8 1625 187 332 0 0 chr6 136419259 136419313 -13097724 - MIRm SINE MIR -118 158 98 8 1625 23 33 0 0 chr6 136419886 136419916 -13097121 + AT_rich Low_complexity Low_complexity 1 30 0 8 1625 629 200 64 0 chr6 136419954 136420079 -13096958 + B1_Mur4 SINE Alu 18 150 0 8 1625 217 306 105 12 chr6 136420096 136420182 -13096855 + B4A SINE B4 81 174 -118 8 1625 481 240 9 28 chr6 136420106 136420213 -13096824 + PB1D10 SINE Alu 9 113 -4 8 1625 903 92 0 0 chr6 136420480 136420611 -13096426 + (GA)n Simple_repeat Simple_repeat 2 132 0 8 1625 189 94 0 0 chr6 136420691 136420723 -13096314 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1625 422 274 38 23 chr6 136421197 136421328 -13095709 + ID_B1 SINE B4 68 200 -24 8 1625 42 36 0 0 chr6 136421811 136421867 -13095170 + AT_rich Low_complexity Low_complexity 1 56 0 8 1625 669 98 202 16 chr6 136421888 136422012 -13095025 + B1_Mus1 SINE Alu 2 148 0 8 1625 196 120 40 0 chr6 136422013 136422063 -13094974 + A-rich Low_complexity Low_complexity 3 54 0 8 1625 359 201 106 126 chr6 136422078 136422277 -13094760 - B3A SINE B2 -21 195 1 8 1625 551 297 0 0 chr6 136422464 136422592 -13094445 - B1F2 SINE Alu -15 134 7 8 1625 2146 111 9 42 chr6 136422782 136423119 -13093918 + ORR1A3 LTR MaLR 1 326 0 8 1625 287 105 0 17 chr6 136423299 136423357 -13093680 + (TTTTG)n Simple_repeat Simple_repeat 3 59 0 8 1625 682 206 0 82 chr6 136423359 136423518 -13093519 - B1_Mur4 SINE Alu -4 146 1 8 1625 335 351 23 0 chr6 136423816 136423947 -13093090 + MLT1L LTR MaLR 96 229 -381 8 1625 4792 163 76 35 chr6 136423999 136425690 -13091347 + Lx7 LINE L1 294 2072 -3808 8 1625 450 79 0 0 chr6 136425690 136425753 -13091284 + (CCA)n Simple_repeat Simple_repeat 3 65 0 8 1625 4635 150 101 42 chr6 136425753 136426059 -13090978 + Lx7 LINE L1 2073 2380 -3500 8 1625 3627 144 116 12 chr6 136426065 136426382 -13090655 + RMER6A LTR ERVK 3 354 -402 8 1625 597 64 0 0 chr6 136426382 136426460 -13090577 + (GA)n Simple_repeat Simple_repeat 1 78 0 9 1625 3627 144 116 12 chr6 136426460 136426825 -13090212 + RMER6A LTR ERVK 355 755 -1 8 1625 3779 178 44 109 chr6 136426825 136427360 -13089677 + Lx7 LINE L1 2369 2868 -3012 8 1625 287 200 0 118 chr6 136427360 136427428 -13089609 + MT2B LTR ERVL 199 258 -343 9 1625 673 111 0 20 chr6 136427371 136427472 -13089565 + B1_Mus2 SINE Alu 49 147 0 9 1625 3779 178 44 109 chr6 136427472 136428419 -13088618 + Lx7 LINE L1 2869 3754 -2126 8 1625 1167 48 7 7 chr6 136428419 136428566 -13088471 + B1_Mus2 SINE Alu 1 147 0 9 1625 569 71 35 0 chr6 136428566 136428651 -13088386 + (GAGAA)n Simple_repeat Simple_repeat 3 90 0 9 1625 1929 171 56 40 chr6 136428661 136429106 -13087931 + Lx7 LINE L1 4802 5253 -627 8 1625 706 190 20 114 chr6 136429110 136429312 -13087725 + Lx7 LINE L1 5530 5712 -168 8 1625 1883 157 86 32 chr6 136429312 136429345 -13087692 + ORR1B2 LTR MaLR 1 33 -334 9 1625 3445 151 153 14 chr6 136429345 136429992 -13087045 - RMER19A LTR ERVK 0 737 1 9 1625 1883 157 86 32 chr6 136429992 136430306 -13086731 + ORR1B2 LTR MaLR 34 367 0 9 1625 1980 214 62 97 chr6 136430306 136430963 -13086074 + Lx7 LINE L1 5711 6344 -1352 8 1625 1713 160 31 9 chr6 136430967 136431377 -13085660 - RMER19A LTR ERVK -4 733 273 9 1625 262 276 70 86 chr6 136431516 136431555 -13085482 - B2_Mm2 SINE B2 -3 192 10 9 1625 512 294 82 27 chr6 136431555 136431702 -13085335 - RSINE1 SINE B4 0 165 11 9 1625 579 189 0 0 chr6 136431806 136431896 -13085141 - B1_Mur1 SINE Alu -6 143 54 9 1625 1184 107 44 22 chr6 136432364 136432546 -13084491 + B2_Mm2 SINE B2 3 188 -7 9 1625 377 194 27 27 chr6 136432831 136432905 -13084132 + B1_Mur2 SINE Alu 70 143 -6 9 1625 1461 185 120 23 chr6 136433023 136433372 -13083665 + ORR1C2 LTR MaLR 2 384 0 9 1625 250 290 48 0 chr6 136433397 136433459 -13083578 + LTR84a LTR ERVL 144 208 -549 9 1625 21 0 0 0 chr6 136433647 136433668 -13083369 + AT_rich Low_complexity Low_complexity 1 21 0 9 1625 226 268 305 0 chr6 136433668 136433750 -13083287 + ID_B1 SINE B4 50 156 -68 9 1625 1238 212 52 4 chr6 136433754 136434005 -13083032 + RLTR18B LTR ERVK 2 264 -248 9 1625 26 0 0 0 chr6 136434027 136434053 -13082984 + AT_rich Low_complexity Low_complexity 1 26 0 9 1625 275 260 39 0 chr6 136434556 136434633 -13082404 - PB1D10 SINE Alu -1 116 37 9 1625 3684 197 47 8 chr6 136435733 136436433 -13080604 - RMER1B Other Other -20 1046 2 9 1625 1275 210 48 22 chr6 136436473 136436741 -13080296 + RLTR18B LTR ERVK 233 507 -5 9 1625 235 309 44 77 chr6 136438256 136438347 -13078690 + B1_Mm SINE Alu 4 91 -56 9 1625 555 16 0 0 chr6 136438383 136438447 -13078590 + (GGGA)n Simple_repeat Simple_repeat 2 65 0 9 1625 321 182 0 0 chr6 136438726 136438781 -13078256 + tRNA-His-CAY_ tRNA tRNA 20 74 -1 9 1625 1463 181 87 67 chr6 136438783 136438996 -13078041 - RMER17C LTR ERVK 0 410 181 9 1625 744 43 0 0 chr6 136438996 136439088 -13077949 + (GGGAGA)n Simple_repeat Simple_repeat 4 95 0 9 1625 1463 181 87 67 chr6 136439088 136439276 -13077761 - RMER17C LTR ERVK -230 180 2 9 1625 522 279 207 39 chr6 136439279 136439588 -13077449 - RLTR28B LTR ERVL -120 361 1 9 1625 225 65 0 0 chr6 136439925 136439956 -13077081 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 1625 240 219 15 59 chr6 136439973 136440041 -13076996 + GA-rich Low_complexity Low_complexity 4 68 0 9 1625 371 233 18 64 chr6 136440394 136440504 -13076533 + ID_B1 SINE B4 79 183 -41 9 1625 211 176 0 0 chr6 136440504 136440538 -13076499 + polypurine Low_complexity Low_complexity 3 36 0 9 1625 713 350 75 3 chr6 136440540 136440872 -13076165 + MLT1B LTR MaLR 35 390 0 9 1625 519 203 33 17 chr6 136442356 136442476 -13074561 - RMER15 LTR ERVL -29 546 425 9 1625 1167 70 0 0 chr6 136442477 136442620 -13074417 + B1_Mus1 SINE Alu 2 144 -4 9 1625 327 25 0 0 chr6 136442620 136442660 -13074377 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 9 1625 275 59 30 0 chr6 136442665 136442716 -13074321 + B1_Mus2 SINE Alu 89 145 -4 9 1625 495 0 0 0 chr6 136442717 136442772 -13074265 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 9 1625 368 359 23 59 chr6 136442772 136442991 -13074046 - RMER15 LTR ERVL -167 408 198 9 1625 204 216 0 0 chr6 136443436 136443487 -13073550 + A-rich Low_complexity Low_complexity 1 51 0 9 1625 633 252 202 30 chr6 136443502 136443735 -13073302 - MTEa LTR MaLR -9 370 98 9 1625 778 260 14 141 chr6 136443760 136443919 -13073118 + ORR1D2 LTR MaLR 1 142 -228 9 1625 1218 41 7 0 chr6 136443919 136444064 -13072973 + B1_Mm SINE Alu 1 146 -1 9 1625 778 260 14 141 chr6 136444064 136444088 -13072949 + ORR1D2 LTR MaLR 143 151 -219 9 1625 192 40 0 0 chr6 136444088 136444113 -13072924 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9 1625 778 260 14 141 chr6 136444113 136444219 -13072818 + ORR1D2 LTR MaLR 152 254 -116 9 1625 267 235 12 36 chr6 136444301 136444385 -13072652 - L1MC2 LINE L1 -36 6308 6227 9 1625 540 186 53 67 chr6 136444439 136444451 -13072586 - B1_Mur3 SINE Alu -1 148 138 9 1625 189 0 0 0 chr6 136444451 136444472 -13072565 + (TTG)n Simple_repeat Simple_repeat 2 22 0 9 1625 540 186 53 67 chr6 136444472 136444609 -13072428 - B1_Mur3 SINE Alu -12 137 1 9 1625 527 266 8 15 chr6 136444695 136444825 -13072212 - B1_Mur1 SINE Alu -18 131 3 9 1625 538 295 33 7 chr6 136444883 136445033 -13072004 - RSINE1 SINE B4 -10 155 2 9 1625 436 274 0 17 chr6 136445033 136445148 -13071889 - PB1D10 SINE Alu 0 117 5 9 1625 1220 263 126 17 chr6 136445192 136445548 -13071489 - MTD LTR MaLR -15 404 10 9 1625 535 248 43 14 chr6 136445607 136445746 -13071291 + B1_Mur1 SINE Alu 1 143 -6 9 1626 512 248 139 0 chr6 136445970 136446099 -13070938 - B1_Mur3 SINE Alu -2 147 1 9 1626 1054 99 0 0 chr6 136446790 136446932 -13070105 - B2_Mm2 SINE B2 -52 143 2 9 1626 1323 178 0 26 chr6 136446954 136447013 -13070024 - URR1A DNA MER1_type 0 226 173 9 1626 1257 176 228 27 chr6 136447013 136447381 -13069656 - RMER10A LTR ERVL 0 442 1 9 1626 1323 178 0 26 chr6 136447381 136447552 -13069485 - URR1A DNA MER1_type -54 172 2 9 1626 497 213 93 16 chr6 136447552 136447669 -13069368 - B1_Mur3 SINE Alu -22 127 1 9 1626 405 292 13 31 chr6 136447772 136447899 -13069138 - PB1D7 SINE Alu -13 136 7 9 1626 247 295 103 43 chr6 136448182 136448299 -13068738 - PB1 SINE Alu -3 124 1 9 1626 407 268 15 30 chr6 136448299 136448348 -13068689 - ID SINE ID -142 82 36 9 1626 313 248 34 39 chr6 136448459 136448572 -13068465 - PB1D10 SINE Alu -31 116 1 9 1626 253 338 85 58 chr6 136448689 136448825 -13068212 + ID_B1 SINE B4 1 220 -4 9 1626 321 333 40 0 chr6 136448825 136448924 -13068113 + B1F SINE Alu 3 105 -44 9 1626 2725 100 112 10 chr6 136449260 136449743 -13067294 + RLTR47_MM LTR ERV1 1 532 0 9 1626 399 309 188 65 chr6 136449810 136450194 -13066843 - MER21B LTR ERV1 -427 436 6 9 1626 333 0 0 0 chr6 136450209 136450246 -13066791 + (TTA)n Simple_repeat Simple_repeat 1 37 0 9 1626 315 268 28 12 chr6 136450345 136450453 -13066584 - PB1D7 SINE Alu -29 120 1 9 1626 706 218 58 17 chr6 136450792 136450967 -13066070 - B3 SINE B2 -7 209 27 9 1626 1149 76 7 0 chr6 136450971 136451116 -13065921 - B1_Mus2 SINE Alu 0 147 2 9 1626 276 198 105 58 chr6 136451153 136451239 -13065798 - LTR37B LTR ERV1 -4 464 375 9 1626 576 283 7 28 chr6 136451311 136451453 -13065584 + ID_B1 SINE B4 86 224 0 9 1626 243 200 207 24 chr6 136451876 136451958 -13065079 - PB1D10 SINE Alu -13 104 8 9 1626 1791 194 84 18 chr6 136451997 136452390 -13064647 + MTD LTR MaLR 1 419 0 9 1626 2048 159 130 2 chr6 136452484 136452893 -13064144 - RMER6B LTR ERVK 0 461 1 9 1626 905 176 14 0 chr6 136452920 136453062 -13063975 + B1_Mur1 SINE Alu 6 149 0 9 1626 420 305 153 46 chr6 136453197 136453393 -13063644 + ID_B1 SINE B4 1 217 -75 9 1626 421 248 29 58 chr6 136453448 136453585 -13063452 - B1_Mur2 SINE Alu 0 149 17 9 1626 491 281 127 27 chr6 136453627 136453777 -13063260 - RSINE1 SINE B4 0 165 1 9 1626 897 173 0 7 chr6 136454126 136454138 -13062899 - B1_Mur4 SINE Alu 0 150 139 9 1626 225 0 0 0 chr6 136454138 136454163 -13062874 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 9 1626 897 173 0 7 chr6 136454163 136454301 -13062736 - B1_Mur4 SINE Alu -12 138 1 9 1626 4054 39 12 2 chr6 136454386 136454874 -13062163 + MT2_Mm LTR ERVL 1 493 0 9 1626 1129 256 102 25 chr6 136454956 136455321 -13061716 + MTD LTR MaLR 18 401 -18 9 1626 333 304 28 21 chr6 136455442 136455583 -13061454 + Lx8 LINE L1 6716 6857 -616 9 1626 580 233 59 46 chr6 136455721 136455920 -13061117 + MT2A LTR ERVL 315 519 -65 9 1626 289 246 0 0 chr6 136456004 136456061 -13060976 - RSINE1 SINE B4 -32 133 77 9 1626 851 209 28 17 chr6 136456064 136456244 -13060793 - RMER15 LTR ERVL -393 182 1 9 1626 270 254 0 48 chr6 136456269 136456321 -13060716 + B1_Mur1 SINE Alu 86 137 -12 9 1626 432 0 0 0 chr6 136456321 136456369 -13060668 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 9 1626 240 308 39 0 chr6 136456497 136456575 -13060462 - ID SINE ID -143 81 1 9 1626 702 212 14 7 chr6 136456605 136456743 -13060294 - MT2A LTR ERVL -310 223 85 9 1626 786 168 8 8 chr6 136456729 136456861 -13060176 - MT2A LTR ERVL -401 132 1 9 1626 3084 23 0 0 chr6 136456880 136457225 -13059812 - ORR1A0 LTR MaLR 0 346 2 9 1626 1828 125 97 13 chr6 136457225 136457515 -13059522 - ORR1A4 LTR MaLR -7 322 5 9 1626 6467 129 97 10 chr6 136457521 136457848 -13059189 - ORR1A4-int LTR MaLR -4 1959 1609 9 1626 3969 107 19 2 chr6 136457848 136458422 -13058615 + MT2B2 LTR ERVL 1 584 0 9 1626 6467 129 97 10 chr6 136458422 136459237 -13057800 - ORR1A4-int LTR MaLR -355 1608 717 9 1626 659 250 21 16 chr6 136459238 136459425 -13057612 + Lx8 LINE L1 6966 7153 -320 9 1626 653 284 29 143 chr6 136459427 136459676 -13057361 + MTD LTR MaLR 1 240 -156 9 1626 265 280 119 8 chr6 136459728 136459854 -13057183 + Lx8 LINE L1 7156 7295 -178 9 1626 504 0 0 0 chr6 136459866 136459922 -13057115 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 9 1626 222 314 180 0 chr6 136460176 136460304 -13056733 + MIRb SINE MIR 60 219 -43 9 1626 709 193 100 0 chr6 136460730 136460880 -13056157 - MTEa LTR MaLR 0 379 215 9 1626 1274 231 58 81 chr6 136460880 136460978 -13056059 - ORR1D1 LTR MaLR 0 374 281 9 1626 1251 196 120 45 chr6 136460978 136461335 -13055702 + ORR1C2 LTR MaLR 1 384 0 9 1626 1274 231 58 81 chr6 136461335 136461478 -13055559 - ORR1D1 LTR MaLR -94 280 158 9 1626 1307 70 29 6 chr6 136461478 136461651 -13055386 - B2_Mm2 SINE B2 -18 177 1 9 1626 1274 231 58 81 chr6 136461651 136461789 -13055248 - ORR1D1 LTR MaLR -217 157 4 9 1626 1018 255 48 80 chr6 136461836 136462147 -13054890 + ORR1E LTR MaLR 2 302 -57 9 1626 1037 70 0 0 chr6 136462152 136462281 -13054756 + B1_Mm SINE Alu 10 138 -9 9 1626 468 0 0 0 chr6 136462281 136462333 -13054704 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 1 1626 2016 183 28 0 chr6 136462442 136462798 -13054239 - ORR1B2 LTR MaLR -1 366 1 1 1626 1376 216 34 52 chr6 136462803 136463184 -13053853 - ORR1D1 LTR MaLR 0 374 1 1 1626 213 281 7 174 chr6 136464119 136464160 -13052877 + B4 SINE B4 58 75 -217 1 1626 317 288 111 8 chr6 136464160 136464286 -13052751 + B1F SINE Alu 4 142 -7 1 1626 351 209 20 131 chr6 136465165 136465264 -13051773 + B3 SINE B2 3 90 -126 1 1626 1488 195 177 17 chr6 136465266 136465668 -13051369 - MTC-int LTR MaLR -767 491 26 1 1626 214 244 12 12 chr6 136465701 136465784 -13051253 + CT-rich Low_complexity Low_complexity 2 84 0 1 1626 606 171 28 34 chr6 136465799 136465933 -13051104 - B1_Mur4 SINE Alu -5 145 1 1 1626 274 269 81 27 chr6 136465941 136466052 -13050985 - MLT1E1 LTR MaLR -394 260 144 1 1626 512 187 22 0 chr6 136466063 136466154 -13050883 - B1_Mur3 SINE Alu -5 144 52 1 1626 258 249 148 39 chr6 136466274 136466397 -13050640 - B1F1 SINE Alu -5 144 5 1 1626 332 303 71 32 chr6 136466742 136466868 -13050169 + B1F SINE Alu 19 149 0 1 1626 26 0 0 0 chr6 136466875 136466901 -13050136 + AT_rich Low_complexity Low_complexity 1 26 0 1 1626 228 100 0 0 chr6 136467021 136467061 -13049976 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1626 23 0 0 0 chr6 136468191 136468214 -13048823 + AT_rich Low_complexity Low_complexity 1 23 0 1 1626 333 0 0 0 chr6 136468888 136468925 -13048112 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1626 216 86 0 0 chr6 136469412 136469447 -13047590 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1626 31 0 0 0 chr6 136469515 136469546 -13047491 + AT_rich Low_complexity Low_complexity 1 31 0 1 1626 414 0 0 0 chr6 136469705 136469751 -13047286 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1626 702 128 108 39 chr6 136469764 136469894 -13047143 - B1_Mus1 SINE Alu -6 142 4 1 1626 290 282 0 49 chr6 136469927 136470009 -13047028 - ID4_ SINE ID 0 83 6 1 1626 229 242 0 57 chr6 136470183 136470253 -13046784 - ID_B1 SINE B4 -2 222 157 1 1626 266 294 22 4 chr6 136470187 136470294 -13046743 - B1_Mur3 SINE Alu -6 143 4 1 1626 255 206 88 0 chr6 136470415 136470483 -13046554 - B1F SINE Alu -57 92 19 1 1626 23 54 0 0 chr6 136470633 136470670 -13046367 + AT_rich Low_complexity Low_complexity 1 37 0 1 1626 679 195 31 0 chr6 136470935 136471063 -13045974 - B1_Mur2 SINE Alu -17 132 1 1 1626 414 264 133 23 chr6 136471474 136471602 -13045435 - B1_Mus1 SINE Alu -6 142 1 1 1626 330 191 67 125 chr6 136471602 136471630 -13045407 - MT2B2 LTR ERVL -432 152 132 1 1626 400 313 83 18 chr6 136471671 136471840 -13045197 - B4 SINE B4 -73 219 40 1 1626 270 0 0 0 chr6 136472331 136472361 -13044676 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 1626 1117 37 44 0 chr6 136472365 136472501 -13044536 - B1_Mus1 SINE Alu -5 143 2 1 1626 266 0 29 0 chr6 136472697 136472731 -13044306 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 1626 515 148 0 12 chr6 136472731 136472813 -13044224 - PB1D9 SINE Alu -39 81 1 1 1626 258 266 25 25 chr6 136473241 136473322 -13043715 + CT-rich Low_complexity Low_complexity 3 83 0 1 1626 231 246 363 0 chr6 136473332 136473434 -13043603 - ID_B1 SINE B4 -85 139 1 1 1626 479 207 90 0 chr6 136473474 136473585 -13043452 - B1_Mur1 SINE Alu -7 142 22 1 1626 229 254 43 43 chr6 136473591 136473661 -13043376 - PB1D7 SINE Alu -9 111 42 1 1626 603 309 0 0 chr6 136473798 136473934 -13043103 + ID_B1 SINE B4 3 138 -86 1 1626 360 336 14 0 chr6 136474084 136474218 -13042819 - ID4_ SINE ID -12 140 3 1 1626 421 341 35 42 chr6 136474441 136474585 -13042452 + RSINE1 SINE B4 18 160 -5 1 1626 1217 119 11 5 chr6 136474636 136474822 -13042215 - B2_Mm2 SINE B2 -5 190 4 1 1626 622 310 0 7 chr6 136475175 136475321 -13041716 + RSINE1 SINE B4 4 148 -17 1 1626 396 0 0 0 chr6 136475346 136475390 -13041647 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1626 304 79 21 3 chr6 136475852 136475910 -13041127 - L1MEc LINE L1 -898 1782 1735 1 1626 288 111 0 0 chr6 136476089 136476134 -13040903 + (TTTC)n Simple_repeat Simple_repeat 4 48 0 1 1626 482 196 64 18 chr6 136476137 136476246 -13040791 - PB1D9 SINE Alu -6 114 1 1 1626 270 183 86 118 chr6 136476164 136476257 -13040780 - MT2B LTR ERVL -360 241 152 1 1626 198 0 0 0 chr6 136476717 136476739 -13040298 + (TTAGGG)n Simple_repeat Simple_repeat 3 24 0 1 1626 218 56 28 0 chr6 136476780 136476816 -13040221 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1626 588 260 93 7 chr6 136476816 136476967 -13040070 - B4A SINE B4 -68 224 61 1 1626 203 377 0 0 chr6 136477100 136477177 -13039860 + T-rich Low_complexity Low_complexity 4 80 0 1 1626 257 316 0 0 chr6 136477112 136477169 -13039868 + polypyrimidine Low_complexity Low_complexity 4 60 0 1 1626 210 289 0 0 chr6 136477518 136477563 -13039474 + ID4 SINE ID 5 49 -34 1 1626 191 103 26 0 chr6 136477563 136477602 -13039435 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1 1626 189 0 0 0 chr6 136477949 136477970 -13039067 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 1 1626 371 299 102 8 chr6 136478710 136478828 -13038209 + RSINE1 SINE B4 37 165 0 1 1626 322 298 17 17 chr6 136479422 136479538 -13037499 + PB1D7 SINE Alu 5 120 0 1 1626 284 222 152 19 chr6 136479972 136480097 -13036940 + B1F SINE Alu 2 149 0 1 1626 205 29 0 56 chr6 136480192 136480228 -13036809 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1 1626 321 118 0 0 chr6 136482090 136482141 -13034896 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1626 207 283 0 36 chr6 136482432 136482487 -13034550 + polypyrimidine Low_complexity Low_complexity 4 56 0 1 1626 214 231 0 37 chr6 136482557 136482611 -13034426 - B1F2 SINE Alu -91 58 7 1 1626 431 256 96 22 chr6 136482879 136483015 -13034022 - B1F SINE Alu 0 149 4 1 1626 292 237 83 50 chr6 136483101 136483221 -13033816 + B1F2 SINE Alu 21 144 -5 1 1626 195 235 0 0 chr6 136483232 136483283 -13033754 + GA-rich Low_complexity Low_complexity 2 52 0 1 1626 26 64 0 0 chr6 136483359 136483406 -13033631 + AT_rich Low_complexity Low_complexity 1 47 0 1 1626 27 49 0 0 chr6 136483665 136483706 -13033331 + AT_rich Low_complexity Low_complexity 1 41 0 1 1626 360 0 0 0 chr6 136484498 136484538 -13032499 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1626 207 0 0 0 chr6 136484738 136484761 -13032276 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1626 827 206 91 0 chr6 136485261 136485426 -13031611 - B3 SINE B2 -9 207 28 1 1626 180 0 0 0 chr6 136485951 136485971 -13031066 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1 1626 304 225 124 29 chr6 136485983 136486088 -13030949 - PB1D10 SINE Alu -1 116 2 1 1626 216 327 0 0 chr6 136486690 136486742 -13030295 + PB1D10 SINE Alu 46 97 -20 1 1626 2573 47 3 0 chr6 136486789 136487107 -13029930 - ORR1A2 LTR MaLR -8 319 1 1 1626 748 196 225 16 chr6 136487655 136487842 -13029195 - URR1A DNA MER1_type 0 226 1 1 1626 1809 147 122 6 chr6 136487898 136488234 -13028803 + ORR1C2 LTR MaLR 3 377 -7 1 1626 4596 211 120 46 chr6 136488239 136488711 -13028326 + ORR1C2-int LTR MaLR 1 478 -892 1 1626 3093 94 33 46 chr6 136488711 136489192 -13027845 + MT2C_Mm LTR ERVL 1 475 0 1 1626 4596 211 120 46 chr6 136489192 136489995 -13027042 + ORR1C2-int LTR MaLR 479 1370 0 1 1626 1721 153 86 22 chr6 136489995 136490355 -13026682 + ORR1C2 LTR MaLR 1 383 -1 1 1626 386 265 107 98 chr6 136490755 136490960 -13026077 + B3 SINE B2 10 216 0 1 1626 21 36 0 0 chr6 136491405 136491433 -13025604 + AT_rich Low_complexity Low_complexity 1 28 0 1 1626 31 44 0 0 chr6 136491504 136491549 -13025488 + AT_rich Low_complexity Low_complexity 1 45 0 1 1626 225 0 0 0 chr6 136492466 136492491 -13024546 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1626 23 86 0 0 chr6 136492896 136492954 -13024083 + AT_rich Low_complexity Low_complexity 1 58 0 1 1626 387 256 41 33 chr6 136493919 136494040 -13022997 + B1F SINE Alu 12 133 -16 1 1626 220 325 0 12 chr6 136494401 136494485 -13022552 - L3 LINE CR1 -358 4131 4049 1 1626 317 307 36 157 chr6 136494667 136494833 -13022204 - RSINE1 SINE B4 -17 148 3 1 1626 254 212 121 0 chr6 136495025 136495091 -13021946 - B1_Mus1 SINE Alu -67 81 8 1 1626 258 284 17 33 chr6 136496904 136497024 -13020013 + CT-rich Low_complexity Low_complexity 5 122 0 1 1626 528 281 26 82 chr6 136497364 136497396 -13019641 - B3 SINE B2 0 216 185 1 1626 402 57 0 0 chr6 136497396 136497449 -13019588 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1626 560 281 26 82 chr6 136497449 136497610 -13019427 - B3A SINE B2 -32 184 34 1 1626 284 291 35 11 chr6 136497690 136497777 -13019260 - B3A SINE B2 -67 131 43 1 1626 24 0 0 0 chr6 136498419 136498443 -13018594 + AT_rich Low_complexity Low_complexity 1 24 0 1 1626 188 149 21 0 chr6 136498757 136498804 -13018233 + T-rich Low_complexity Low_complexity 2 49 0 1 1626 671 35 12 0 chr6 136500897 136500983 -13016054 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1626 474 144 10 72 chr6 136501022 136501119 -13015918 - B3 SINE B2 -124 92 2 2 1626 305 140 18 0 chr6 136501479 136501536 -13015501 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 3 1626 279 256 104 127 chr6 136501547 136501681 -13015356 - RSINE1 SINE B4 -1 164 34 4 1626 481 189 327 13 chr6 136501810 136501960 -13015077 + B3A SINE B2 2 198 0 5 1626 222 37 0 0 chr6 136503083 136503110 -13013927 + (TA)n Simple_repeat Simple_repeat 1 27 0 6 1626 529 278 24 0 chr6 136504679 136504805 -13012232 - B1F1 SINE Alu -20 129 1 7 1626 635 204 71 21 chr6 136505067 136505207 -13011830 - B1_Mus2 SINE Alu 0 147 1 8 1626 23 54 0 0 chr6 136505211 136505248 -13011789 + AT_rich Low_complexity Low_complexity 1 37 0 9 1626 216 97 0 0 chr6 136506352 136506383 -13010654 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1626 274 310 33 33 chr6 136506400 136506520 -13010517 - MLT1C LTR MaLR -66 401 282 1 1626 606 284 20 74 chr6 136506940 136507142 -13009895 + B3 SINE B2 2 192 -24 1 1626 903 267 126 35 chr6 136507240 136507438 -13009599 + MTE2b LTR MaLR 1 226 -153 1 1626 405 54 0 0 chr6 136507438 136507494 -13009543 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1626 351 0 0 0 chr6 136507494 136507532 -13009505 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1626 903 267 126 35 chr6 136507532 136507674 -13009363 + MTE2b LTR MaLR 227 372 -7 1 1626 236 206 130 14 chr6 136507839 136507908 -13009129 - L1MB8 LINE L1 -81 6097 6021 1 1626 239 189 105 92 chr6 136507946 136508022 -13009015 + B3A SINE B2 1 77 -121 1 1626 1060 192 42 0 chr6 136510508 136510722 -13006315 - URR1B DNA MER1_type 0 225 3 1 1626 571 265 34 7 chr6 136511215 136511363 -13005674 + B3A SINE B2 4 155 -43 1 1626 530 41 14 0 chr6 136511369 136511442 -13005595 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1626 864 35 259 0 chr6 136511511 136511627 -13005410 + B1_Mus1 SINE Alu 2 147 -1 2 1626 243 79 0 0 chr6 136511628 136511666 -13005371 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2 1626 268 290 194 0 chr6 136511873 136511966 -13005071 - RSINE1 SINE B4 -27 138 28 2 1626 846 279 95 68 chr6 136515446 136515815 -13001222 - MLT1C LTR MaLR -2 465 87 2 1626 1032 240 19 37 chr6 136515989 136516205 -13000832 + B3 SINE B2 4 215 -1 2 1626 611 248 125 20 chr6 136516246 136516398 -13000639 - ID_B1 SINE B4 -53 171 4 2 1626 300 154 0 0 chr6 136516559 136516611 -13000426 + CT-rich Low_complexity Low_complexity 3 54 0 2 1626 328 282 72 65 chr6 136516611 136516888 -13000149 - L1_Mur3 LINE L1 -3751 2392 2114 2 1626 319 312 110 20 chr6 136517268 136517706 -12999331 - L1_Mur3 LINE L1 -4150 1730 1254 2 1626 453 81 0 0 chr6 136517708 136517770 -12999267 + (T)n Simple_repeat Simple_repeat 1 62 0 2 1626 1294 54 0 0 chr6 136517770 136517918 -12999119 - B1_Mus1 SINE Alu 0 148 1 3 1626 300 70 0 0 chr6 136518043 136518086 -12998951 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1626 1292 48 0 0 chr6 136518086 136518233 -12998804 - B1_Mus2 SINE Alu 0 147 1 3 1626 256 271 209 37 chr6 136518558 136518692 -12998345 - RSINE1 SINE B4 0 165 9 3 1626 1060 163 141 10 chr6 136519360 136519558 -12997479 + URR1A DNA MER1_type 1 224 -2 3 1626 927 193 201 136 chr6 136520076 136520430 -12996607 - ORR1C1 LTR MaLR -1 377 1 3 1626 479 311 96 6 chr6 136520663 136520841 -12996196 + ID_B1 SINE B4 30 223 -1 3 1626 207 0 0 0 chr6 136521010 136521033 -12996004 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 1626 1212 89 0 0 chr6 136521034 136521192 -12995845 - B2_Mm2 SINE B2 -37 158 1 3 1626 3440 42 2 0 chr6 136521871 136522281 -12994756 + L1Md_F2 LINE L1 5176 5586 -297 3 1626 8196 31 62 1 chr6 136522281 136523220 -12993817 + L1Md_F2 LINE L1 5587 6582 0 3 1626 7865 151 50 27 chr6 136524073 136524188 -12992849 - Lx4A LINE L1 0 7058 6939 4 1626 540 45 0 0 chr6 136524188 136524255 -12992782 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1626 7865 151 50 27 chr6 136524255 136524931 -12992106 - Lx4A LINE L1 -120 6938 6253 4 1626 1293 97 23 0 chr6 136524931 136525107 -12991930 - B2_Mm2 SINE B2 -14 181 2 4 1626 26014 120 73 17 chr6 136525107 136529042 -12987995 - Lx4A LINE L1 -806 6252 2051 4 1626 402 115 0 0 chr6 136529042 136529103 -12987934 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1626 26014 129 58 18 chr6 136529103 136530542 -12986495 - Lx4A LINE L1 -3827 2050 593 4 1626 467 224 51 0 chr6 136531339 136531437 -12985600 + B1_Mur2 SINE Alu 47 149 0 4 1626 1211 62 0 14 chr6 136531518 136531656 -12985381 + B1_Mus1 SINE Alu 2 139 -9 4 1626 859 0 19 9 chr6 136531656 136531763 -12985274 + (CAAAC)n Simple_repeat Simple_repeat 2 109 0 4 1626 216 183 196 98 chr6 136531866 136531999 -12985038 + B4 SINE B4 87 232 -60 4 1626 1181 80 0 11 chr6 136531999 136532714 -12984323 + (TG)n Simple_repeat Simple_repeat 1 706 0 4 1626 1170 50 0 32 chr6 136532734 136532920 -12984117 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1626 266 0 29 0 chr6 136533375 136533409 -12983628 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1626 618 192 92 0 chr6 136533412 136533542 -12983495 - B1_Mur4 SINE Alu -7 143 2 5 1626 270 277 118 10 chr6 136533542 136533644 -12983393 - Charlie1a DNA MER1_type -302 1153 1041 5 1626 234 372 0 0 chr6 136533771 136533849 -12983188 + PB1D10 SINE Alu 2 79 -38 5 1626 261 267 43 22 chr6 136534707 136534799 -12982238 - Charlie1a DNA MER1_type -1337 118 25 5 1626 473 97 0 27 chr6 136535352 136535426 -12981611 + B1_Mus2 SINE Alu 76 147 0 5 1626 245 282 58 33 chr6 136536389 136536510 -12980527 - L1MA5 LINE L1 -22 6278 6155 5 1626 791 168 27 27 chr6 136536891 136537038 -12979999 + B1_Mus1 SINE Alu 2 148 0 5 1626 290 161 210 0 chr6 136537178 136537259 -12979778 - B1_Mur3 SINE Alu -50 99 2 5 1626 816 11 0 0 chr6 136537356 136537449 -12979588 + (TTCTC)n Simple_repeat Simple_repeat 2 94 0 5 1626 1038 101 164 0 chr6 136537449 136537608 -12979429 - B2_Mm1t SINE B2 -8 185 1 5 1626 26 0 0 0 chr6 136537644 136537670 -12979367 + AT_rich Low_complexity Low_complexity 1 26 0 5 1626 22 0 0 0 chr6 136538759 136538781 -12978256 + AT_rich Low_complexity Low_complexity 1 22 0 6 1626 670 274 74 21 chr6 136539089 136539279 -12977758 + B3 SINE B2 2 201 -15 6 1626 535 193 8 34 chr6 136539529 136539647 -12977390 - B3A SINE B2 -83 115 1 6 1626 608 301 56 4 chr6 136539941 136540144 -12976893 + B3A SINE B2 6 216 0 6 1626 1415 70 41 0 chr6 136540232 136540403 -12976634 - B2_Mm2 SINE B2 -16 179 2 6 1626 572 282 99 5 chr6 136540734 136540955 -12976082 + B4A SINE B4 37 278 -14 6 1626 1481 75 32 0 chr6 136541242 136541430 -12975607 + B2_Mm2 SINE B2 2 195 0 6 1626 314 185 0 0 chr6 136541734 136541788 -12975249 - ID_B1 SINE B4 0 224 171 6 1626 323 167 0 15 chr6 136542268 136542335 -12974702 + CT-rich Low_complexity Low_complexity 2 67 0 6 1626 349 230 240 13 chr6 136542462 136542616 -12974421 - Lx8 LINE L1 -3 7470 7282 6 1626 2127 263 71 63 chr6 136542632 136543420 -12973617 - Lx8 LINE L1 -251 7222 6429 6 1626 278 250 21 83 chr6 136543420 136543516 -12973521 - B1_Mm SINE Alu -41 106 17 7 1626 215 326 177 8 chr6 136543864 136543994 -12973043 - RSINE1 SINE B4 -8 157 6 7 1626 334 268 0 27 chr6 136544646 136544719 -12972318 - RSINE1 SINE B4 -2 163 93 7 1626 5413 123 55 30 chr6 136545136 136545250 -12971787 - Lx2B LINE L1 -5 6995 6882 7 1626 225 0 0 0 chr6 136545250 136545275 -12971762 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 7 1626 5413 123 55 30 chr6 136545275 136546033 -12971004 - Lx2B LINE L1 -119 6881 6103 7 1626 22 35 0 0 chr6 136546370 136546399 -12970638 + AT_rich Low_complexity Low_complexity 1 29 0 7 1626 225 333 31 12 chr6 136546497 136546658 -12970379 + MER103 DNA DNA 1 164 -2 7 1626 1311 27 7 0 chr6 136547384 136547530 -12969507 + B1_Mm SINE Alu 1 147 0 7 1626 1250 122 21 11 chr6 136547615 136547806 -12969231 + B2_Mm1t SINE B2 1 193 0 7 1626 310 262 3 0 chr6 136548490 136548558 -12968479 - ID4_ SINE ID -67 85 17 7 1626 1016 164 36 29 chr6 136548612 136548902 -12968135 - ORR1B1 LTR MaLR -9 385 1 8 1626 252 263 61 6 chr6 136550532 136550619 -12966418 - B1F SINE Alu -17 132 14 8 1626 349 366 0 0 chr6 136550805 136550917 -12966120 + RSINE1 SINE B4 25 136 -29 8 1626 360 0 0 0 chr6 136551396 136551436 -12965601 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1626 493 235 0 56 chr6 136552116 136552224 -12964813 - B1_Mur3 SINE Alu -46 103 2 8 1626 462 257 0 9 chr6 136552344 136552454 -12964583 - B1_Mur3 SINE Alu -26 123 15 8 1626 507 85 0 0 chr6 136553280 136553362 -12963675 + (TG)n Simple_repeat Simple_repeat 1 82 0 8 1626 585 205 0 43 chr6 136553363 136553501 -12963536 - B3A SINE B2 -51 147 16 8 1626 227 338 0 26 chr6 136553433 136553509 -12963528 - tRNA-Ala-GCA tRNA tRNA 0 75 2 8 1626 23 0 0 0 chr6 136553812 136553835 -12963202 + AT_rich Low_complexity Low_complexity 1 23 0 8 1626 885 153 7 46 chr6 136554117 136554268 -12962769 - B1_Mur4 SINE Alu -5 145 1 9 1626 1104 8 0 0 chr6 136555881 136556006 -12961031 + (GGAA)n Simple_repeat Simple_repeat 2 126 0 9 1626 1861 186 121 20 chr6 136559891 136560329 -12956708 + RMER13A LTR ERVK 1 482 -378 9 1626 296 267 132 137 chr6 136560347 136560581 -12956456 + RMER13A LTR ERVK 562 794 -66 9 1626 499 252 63 28 chr6 136560959 136561102 -12955935 - B3 SINE B2 -6 210 63 9 1626 203 136 45 0 chr6 136561581 136561625 -12955412 + GA-rich Low_complexity Low_complexity 5 50 0 9 1626 716 263 0 26 chr6 136561952 136562108 -12954929 - RSINE1 SINE B4 -10 155 4 9 1626 556 305 143 7 chr6 136563194 136563494 -12953543 + L1MA4A LINE L1 5561 5901 -402 9 1626 265 156 0 25 chr6 136563850 136563929 -12953108 + (TG)n Simple_repeat Simple_repeat 1 77 0 9 1626 255 298 86 9 chr6 136564383 136564488 -12952549 - MER46C DNA MER2_type -225 113 1 9 1626 181 315 154 22 chr6 136564496 136564587 -12952450 - MIRb SINE MIR -123 145 43 9 1626 527 326 19 139 chr6 136565005 136565365 -12951672 + MTE2a LTR MaLR 10 326 -53 1 1626 1545 48 11 0 chr6 136566257 136566446 -12950591 + B2_Mm1t SINE B2 1 191 -2 1 1626 969 93 39 162 chr6 136566457 136566661 -12950376 + B2_Mm2 SINE B2 3 181 -14 1 1626 504 180 0 24 chr6 136566727 136566801 -12950236 + polypyrimidine Low_complexity Low_complexity 52 123 0 1 1626 1266 56 6 16 chr6 136566801 136566983 -12950054 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1626 504 180 0 24 chr6 136566983 136567033 -12950004 + polypyrimidine Low_complexity Low_complexity 2 51 0 1 1626 465 337 117 0 chr6 136567316 136567512 -12949525 + MLT1A LTR MaLR 156 374 0 1 1626 1481 232 74 21 chr6 136567746 136568125 -12948912 + MTD LTR MaLR 14 412 -7 1 1626 1139 172 9 60 chr6 136568247 136568463 -12948574 - B3 SINE B2 -3 213 9 1 1626 234 277 34 67 chr6 136568385 136568474 -12948563 - RSINE1 SINE B4 -79 86 1 1 1626 240 218 64 0 chr6 136568481 136568559 -12948478 - L1MA8 LINE L1 -4 6287 6205 1 1626 321 89 0 0 chr6 136568563 136568608 -12948429 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1626 244 299 107 45 chr6 136568878 136568990 -12948047 + PB1D9 SINE Alu 2 120 0 1 1626 363 291 134 0 chr6 136569945 136570072 -12946965 + RSINE1 SINE B4 21 164 -1 1 1626 8559 132 55 6 chr6 136570135 136571512 -12945525 + Lx4B LINE L1 5613 7057 -1 1 1626 734 144 24 30 chr6 136571529 136571694 -12945343 + RMER1B Other Other 903 1066 0 1 1626 297 270 108 62 chr6 136571696 136571826 -12945211 - RSINE1 SINE B4 -7 158 23 1 1626 8237 39 0 0 chr6 136571893 136573150 -12943887 - L1Md_T LINE L1 0 6582 5326 1 1626 3097 17 0 0 chr6 136573149 136573506 -12943531 + L1Md_T LINE L1 4959 5315 -568 1 1626 285 304 19 65 chr6 136573569 136573724 -12943313 + L2a LINE L2 3271 3418 -8 1 1626 261 0 0 0 chr6 136573813 136573842 -12943195 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1626 493 268 21 42 chr6 136574728 136574872 -12942165 + RSINE1 SINE B4 4 144 -21 1 1626 186 294 78 134 chr6 136575238 136575470 -12941567 + MIRb SINE MIR 23 241 -27 1 1626 802 156 0 36 chr6 136575626 136575766 -12941271 - B1_Mur2 SINE Alu 0 149 15 1 1626 286 314 24 24 chr6 136575913 136576037 -12941000 + MLT1B LTR MaLR 23 146 -244 1 1626 508 246 155 21 chr6 136576021 136576208 -12940829 - ID_B1 SINE B4 -11 213 2 1 1626 237 103 0 0 chr6 136576260 136576299 -12940738 - B3A SINE B2 -159 39 1 1 1626 227 229 43 0 chr6 136576367 136576437 -12940600 + L1MEg LINE L1 2063 2135 -4107 1 1626 195 69 0 0 chr6 136576754 136576783 -12940254 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1627 295 224 0 0 chr6 136577136 136577194 -12939843 + RLTR15 LTR ERVK 1 58 -470 1 1627 438 267 72 62 chr6 136577227 136577538 -12939499 + RLTR15 LTR ERVK 42 315 -44 1 1627 353 316 91 44 chr6 136577571 136578059 -12938978 + L1MEg LINE L1 3779 4293 -1853 1 1627 523 283 19 44 chr6 136578086 136578245 -12938792 + RSINE1 SINE B4 11 165 0 1 1627 618 224 8 31 chr6 136578319 136578448 -12938589 + B1_Mur1 SINE Alu 22 147 -2 1 1627 392 242 40 40 chr6 136578479 136578568 -12938469 - PB1D10 SINE Alu -1 116 28 1 1627 584 325 139 27 chr6 136578568 136579061 -12937976 + MLT1F1 LTR MaLR 2 589 -6 1 1627 207 0 0 0 chr6 136579062 136579085 -12937952 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1627 1037 101 6 0 chr6 136579570 136579749 -12937288 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1627 534 200 0 0 chr6 136579766 136579851 -12937186 - PB1D9 SINE Alu -34 86 2 1 1627 349 233 20 91 chr6 136579851 136579863 -12937174 - MT2B LTR ERVL -358 241 152 1 1627 337 286 38 0 chr6 136579992 136580097 -12936940 - PB1D10 SINE Alu -8 109 1 1 1627 399 157 0 0 chr6 136580523 136580593 -12936444 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1627 581 196 20 0 chr6 136581120 136581222 -12935815 + URR1B DNA MER1_type 14 117 -108 1 1627 452 344 46 13 chr6 136581265 136581418 -12935619 - RSINE1 SINE B4 -6 159 2 1 1627 230 200 20 0 chr6 136581419 136581469 -12935568 + CT-rich Low_complexity Low_complexity 4 54 0 1 1627 690 75 0 0 chr6 136581477 136581570 -12935467 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 1 1627 558 281 14 7 chr6 136581590 136581730 -12935307 - B1_Mur1 SINE Alu -7 142 2 1 1627 1292 232 61 130 chr6 136582087 136582494 -12934543 + MTE2b LTR MaLR 1 379 0 1 1627 241 308 35 118 chr6 136583219 136583284 -12933753 - B3 SINE B2 -1 215 12 1 1627 745 222 6 32 chr6 136583284 136583442 -12933595 - RSINE1 SINE B4 0 165 12 1 1627 439 17 33 0 chr6 136583596 136583656 -12933381 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1627 892 93 59 86 chr6 136583658 136583810 -12933227 - B2_Mm2 SINE B2 -33 162 15 1 1627 276 289 11 108 chr6 136583729 136583822 -12933215 - RSINE1 SINE B4 -79 86 3 1 1627 1253 228 43 49 chr6 136584432 136584736 -12932301 - ORR1D1 LTR MaLR -72 302 1 1 1627 291 327 9 9 chr6 136584794 136584905 -12932132 - PB1D7 SINE Alu -6 114 4 1 1627 2505 192 93 27 chr6 136584930 136585446 -12931591 + Lx9 LINE L1 6933 7477 -167 1 1627 504 0 0 0 chr6 136585446 136585502 -12931535 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 1 1627 2505 192 93 27 chr6 136585502 136585653 -12931384 + Lx9 LINE L1 7478 7643 -1 1 1627 767 238 123 11 chr6 136585763 136585950 -12931087 - B3 SINE B2 0 216 9 1 1627 597 316 7 0 chr6 136586084 136586223 -12930814 - RSINE1 SINE B4 -2 163 24 1 1627 432 0 0 0 chr6 136586281 136586329 -12930708 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1627 248 246 0 116 chr6 136586385 136586454 -12930583 + MT2B LTR ERVL 176 236 -365 1 1627 461 156 31 22 chr6 136586392 136586503 -12930534 + B1_Mm SINE Alu 19 128 -19 1 1627 657 25 0 0 chr6 136586793 136586872 -12930165 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 1 1627 1526 166 55 26 chr6 136586916 136587245 -12929792 - MTC LTR MaLR 0 419 7 1 1627 272 241 0 0 chr6 136587217 136587271 -12929766 - ID_B1 SINE B4 -15 209 156 1 1627 476 299 122 95 chr6 136587273 136587642 -12929395 - MTE2a LTR MaLR 0 379 1 1 1627 270 278 14 27 chr6 136587642 136587705 -12929332 - ID_B1 SINE B4 -68 156 95 1 1627 213 280 0 0 chr6 136587813 136587863 -12929174 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1627 258 324 95 0 chr6 136588505 136588579 -12928458 - ID4 SINE ID 0 83 3 1 1627 700 183 16 8 chr6 136588803 136588924 -12928113 - B3A SINE B2 -76 122 1 1 1627 307 275 0 81 chr6 136589337 136589424 -12927613 + PB1D10 SINE Alu 26 105 -12 1 1627 775 231 76 36 chr6 136589899 136590111 -12926926 + B4A SINE B4 1 221 -71 1 1627 663 256 16 62 chr6 136590111 136590303 -12926734 + B3A SINE B2 1 183 -15 1 1627 239 252 30 75 chr6 136590246 136590379 -12926658 + RLTR40 LTR ERVK 557 683 -134 1 1627 387 0 0 0 chr6 136590412 136590455 -12926582 + (TAA)n Simple_repeat Simple_repeat 3 45 0 1 1627 563 314 64 95 chr6 136590487 136590846 -12926191 + ORR1E LTR MaLR 1 348 -11 1 1627 248 286 98 32 chr6 136590873 136590996 -12926041 + ORR1D1 LTR MaLR 240 370 -4 1 1627 301 221 244 0 chr6 136591581 136591667 -12925370 + B3A SINE B2 2 108 -90 1 1627 2214 77 55 46 chr6 136591686 136592013 -12925024 - MTA_Mm LTR MaLR -66 330 1 1 1627 463 345 7 7 chr6 136592144 136592287 -12924750 + RSINE1 SINE B4 6 148 -17 1 1627 186 43 0 0 chr6 136592310 136592333 -12924704 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1627 30 45 0 0 chr6 136592341 136592385 -12924652 + AT_rich Low_complexity Low_complexity 1 44 0 1 1627 341 253 34 11 chr6 136592830 136592918 -12924119 - B3A SINE B2 0 198 109 1 1627 337 219 72 12 chr6 136593077 136593160 -12923877 - B4 SINE B4 -191 101 14 1 1627 297 0 0 0 chr6 136593509 136593542 -12923495 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1627 2728 143 2 7 chr6 136593601 136594024 -12923013 + MTC LTR MaLR 1 421 0 1 1627 683 220 54 102 chr6 136595084 136595230 -12921807 + B3A SINE B2 9 154 -44 1 1627 378 0 0 0 chr6 136595230 136595272 -12921765 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1627 426 220 54 102 chr6 136595272 136595292 -12921745 + B2_Mm2 SINE B2 149 167 -28 1 1627 772 229 5 39 chr6 136595302 136595468 -12921569 + ID_B1 SINE B4 82 246 -46 1 1627 685 261 131 96 chr6 136595490 136595834 -12921203 - ORR1E LTR MaLR -3 356 1 1 1627 606 200 35 49 chr6 136596344 136596486 -12920551 + B1_Mur2 SINE Alu 10 149 0 1 1627 203 217 17 0 chr6 136596490 136596550 -12920487 + GA-rich Low_complexity Low_complexity 3 63 0 1 1627 192 143 0 0 chr6 136596599 136596641 -12920396 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1627 763 128 61 4 chr6 136596680 136596826 -12920211 + B1_Mur2 SINE Alu 1 149 -1 1 1627 436 282 0 98 chr6 136596969 136597091 -12919946 + RSINE1 SINE B4 56 165 0 1 1627 622 246 199 6 chr6 136597539 136597715 -12919322 + B3 SINE B2 1 210 -6 1 1627 882 0 0 0 chr6 136597788 136597886 -12919151 + (GAA)n Simple_repeat Simple_repeat 3 100 0 1 1627 711 287 95 35 chr6 136597920 136598151 -12918886 + B4A SINE B4 48 292 0 1 1627 477 254 0 31 chr6 136598418 136598544 -12918493 + B1F1 SINE Alu 25 139 -11 1 1627 733 229 93 12 chr6 136598577 136598749 -12918288 + ID_B1 SINE B4 13 198 -26 1 1627 427 287 93 0 chr6 136598638 136598767 -12918270 + B1_Mur3 SINE Alu 5 145 -4 1 1627 228 250 18 71 chr6 136598725 136598781 -12918256 + MT2B2 LTR ERVL 221 273 -311 1 1627 1382 86 16 0 chr6 136598886 136599072 -12917965 + B2_Mm2 SINE B2 6 194 -1 1 1627 180 0 0 0 chr6 136599076 136599096 -12917941 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1627 231 361 14 0 chr6 136599214 136599286 -12917751 - RSINE1 SINE B4 0 165 93 2 1627 267 31 0 0 chr6 136599287 136599319 -12917718 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1627 395 233 46 69 chr6 136599325 136599500 -12917537 + RMER10A LTR ERVL 220 390 -52 2 1627 402 195 0 0 chr6 136599533 136599610 -12917427 - RSINE1 SINE B4 -68 97 21 2 1627 744 287 90 19 chr6 136599780 136600046 -12916991 + B4A SINE B4 8 292 0 2 1627 371 281 224 45 chr6 136600576 136600792 -12916245 + B4 SINE B4 3 268 -24 2 1627 252 0 0 0 chr6 136600792 136600820 -12916217 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1627 371 281 224 45 chr6 136600820 136600849 -12916188 + B4 SINE B4 269 292 0 2 1627 856 103 17 28 chr6 136600850 136601029 -12916008 + (CA)n Simple_repeat Simple_repeat 1 177 0 2 1627 1194 248 33 30 chr6 136601323 136601652 -12915385 + MTE2b LTR MaLR 47 376 -3 2 1627 553 278 0 0 chr6 136601652 136601766 -12915271 + ID_B1 SINE B4 103 216 -8 2 1627 228 264 57 0 chr6 136601721 136601774 -12915263 + PB1D7 SINE Alu 65 120 0 2 1627 609 250 40 0 chr6 136602017 136602141 -12914896 + RSINE1 SINE B4 1 129 -36 2 1627 537 16 0 0 chr6 136602161 136602223 -12914814 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 2 1627 390 264 53 76 chr6 136602642 136602773 -12914264 - PB1D10 SINE Alu -17 132 5 2 1627 573 214 87 8 chr6 136602843 136602970 -12914067 + B1F1 SINE Alu 10 146 -3 2 1627 657 119 0 0 chr6 136602971 136603072 -12913965 + (CA)n Simple_repeat Simple_repeat 1 101 0 2 1627 712 251 37 50 chr6 136603704 136603922 -12913115 - B3 SINE B2 0 216 2 2 1627 375 299 9 0 chr6 136603924 136604031 -12913006 - ID_B1 SINE B4 0 224 117 2 1627 1224 34 7 0 chr6 136604079 136604225 -12912812 + B1_Mus1 SINE Alu 1 147 -1 2 1627 297 99 14 40 chr6 136604226 136604300 -12912737 + (CAAA)n Simple_repeat Simple_repeat 2 73 0 2 1627 298 256 76 38 chr6 136604525 136604683 -12912354 + RLTR42-int LTR ERVK 1149 1312 -4210 2 1627 255 221 44 55 chr6 136604724 136604815 -12912222 + RLTR42-int LTR ERVK 1311 1400 -4122 2 1627 1127 43 43 0 chr6 136605208 136605346 -12911691 - B1_Mus1 SINE Alu 0 148 5 2 1627 348 127 0 0 chr6 136605533 136605588 -12911449 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 2 1627 520 240 101 0 chr6 136605590 136605719 -12911318 - B1F SINE Alu -7 142 1 2 1627 216 0 0 0 chr6 136605925 136605949 -12911088 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1627 540 233 0 25 chr6 136606293 136606412 -12910625 + PB1D7 SINE Alu 5 120 0 2 1627 707 196 21 14 chr6 136606773 136606913 -12910124 - B1F2 SINE Alu -7 142 2 2 1627 460 271 31 74 chr6 136607161 136607324 -12909713 - RSINE1 SINE B4 -7 158 3 2 1627 576 159 1 0 chr6 136608145 136608241 -12908796 + B1_Mur1 SINE Alu 42 138 -11 2 1627 312 83 0 0 chr6 136608245 136608293 -12908744 + (CATA)n Simple_repeat Simple_repeat 2 49 0 2 1627 387 0 0 0 chr6 136609061 136609104 -12907933 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1627 204 125 0 0 chr6 136610127 136610159 -12906878 + (CAG)n Simple_repeat Simple_repeat 3 34 0 2 1627 366 290 43 0 chr6 136610966 136611059 -12905978 + PB1D7 SINE Alu 24 120 0 2 1627 1372 77 5 16 chr6 136611792 136611978 -12905059 - B2_Mm1a SINE B2 -8 185 2 2 1627 725 261 251 26 chr6 136612131 136612473 -12904564 + MTD LTR MaLR 1 419 0 2 1627 256 302 0 34 chr6 136612560 136612649 -12904388 - RLTR25A LTR ERVK -496 607 522 2 1627 633 101 0 0 chr6 136612571 136612660 -12904377 - B1_Mus1 SINE Alu -24 124 36 2 1627 1265 78 0 6 chr6 136612982 136613162 -12903875 + (TTC)n Simple_repeat Simple_repeat 2 180 0 2 1627 3008 73 0 0 chr6 136613162 136613544 -12903493 - L1_Mus1 LINE L1 -5 6562 6181 2 1627 317 161 0 18 chr6 136613556 136613625 -12903412 + ID4_ SINE ID 12 79 -73 2 1627 207 167 0 0 chr6 136613682 136613718 -12903319 + C-rich Low_complexity Low_complexity 2 37 0 2 1627 1102 95 0 0 chr6 136613994 136614142 -12902895 + B1_Mus1 SINE Alu 1 148 0 2 1627 227 54 27 0 chr6 136614517 136614554 -12902483 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1627 350 374 9 0 chr6 136614717 136614824 -12902213 - RSINE1 SINE B4 -17 148 41 2 1627 1196 55 7 0 chr6 136615052 136615198 -12901839 + B1_Mus1 SINE Alu 1 147 -1 2 1627 1265 41 0 0 chr6 136615201 136615348 -12901689 + B1_Mm SINE Alu 1 147 0 2 1627 202 68 68 0 chr6 136615354 136615398 -12901639 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 2 1627 251 265 73 0 chr6 136615404 136615472 -12901565 + PB1D10 SINE Alu 45 117 0 2 1627 952 284 74 84 chr6 136615554 136615618 -12901419 + MTD LTR MaLR 6 51 -368 2 1627 1223 55 0 0 chr6 136615618 136615764 -12901273 - B1_Mm SINE Alu 0 147 2 2 1627 952 283 73 62 chr6 136615764 136616117 -12900920 + MTD LTR MaLR 52 405 -14 2 1627 278 359 107 0 chr6 136616382 136616513 -12900524 - MLT1J2 LTR MaLR -41 407 263 2 1627 451 188 12 0 chr6 136616697 136616782 -12900255 - B3A SINE B2 -109 89 4 2 1627 758 142 85 61 chr6 136617425 136617452 -12899585 - RMER10B LTR ERVL 0 398 374 2 1627 2275 139 67 14 chr6 136617452 136617882 -12899155 + RLTR11B LTR ERVK 1 453 0 2 1627 758 142 85 61 chr6 136617882 136618019 -12899018 - RMER10B LTR ERVL -25 373 230 2 1627 612 168 0 9 chr6 136618028 136618136 -12898901 - RMER10B LTR ERVL -291 107 1 2 1627 261 0 0 0 chr6 136618406 136618435 -12898602 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1627 306 0 0 0 chr6 136618435 136618468 -12898569 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1627 666 37 0 0 chr6 136618468 136618548 -12898489 + (GA)n Simple_repeat Simple_repeat 1 81 0 2 1627 4293 84 14 15 chr6 136618587 136619176 -12897861 - MT2B LTR ERVL -2 599 12 2 1627 378 256 0 13 chr6 136619206 136619285 -12897752 - RSINE1 SINE B4 -83 82 5 2 1627 497 243 14 0 chr6 136619950 136620098 -12896939 + (CATATA)n Simple_repeat Simple_repeat 6 155 0 2 1627 327 238 51 103 chr6 136620098 136620215 -12896822 + L1M4b LINE L1 1821 1931 -5403 2 1627 348 43 0 0 chr6 136620475 136620521 -12896516 + (TCTCTG)n Simple_repeat Simple_repeat 1 46 0 2 1627 794 183 125 6 chr6 136620563 136620739 -12896298 - B3A SINE B2 0 198 2 2 1627 486 231 123 20 chr6 136620748 136620894 -12896143 - B4 SINE B4 -74 218 58 2 1627 652 254 34 27 chr6 136621223 136621369 -12895668 + B3A SINE B2 1 147 -51 2 1627 363 23 0 0 chr6 136621369 136621413 -12895624 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1627 229 232 18 18 chr6 136621413 136621470 -12895567 + GA-rich Low_complexity Low_complexity 1 57 0 2 1627 1722 205 46 61 chr6 136621652 136622062 -12894975 - RLTR1D LTR ERV1 -18 587 184 2 1627 889 239 13 16 chr6 136622062 136622299 -12894738 - RLTR1D LTR ERV1 -358 247 7 2 1627 944 266 5 5 chr6 136622303 136622518 -12894519 - B3 SINE B2 0 216 2 2 1627 806 84 124 44 chr6 136623300 136623437 -12893600 - B1_Mus1 SINE Alu 0 148 1 2 1627 837 194 200 0 chr6 136623814 136623994 -12893043 + B3 SINE B2 1 216 0 2 1627 355 303 53 35 chr6 136624063 136624176 -12892861 + MER2 DNA MER2_type 1 115 -230 2 1627 425 271 0 50 chr6 136624185 136624286 -12892751 - PB1D9 SINE Alu -13 107 12 2 1627 443 241 25 59 chr6 136624349 136624468 -12892569 + PB1D10 SINE Alu 1 115 -2 2 1627 1363 91 27 5 chr6 136624484 136624671 -12892366 + B2_Mm2 SINE B2 1 191 -4 2 1627 405 86 0 0 chr6 136624671 136624729 -12892308 + (GGA)n Simple_repeat Simple_repeat 1 58 0 2 1627 314 345 21 14 chr6 136624733 136624866 -12892171 + PB1D7 SINE Alu 1 136 -13 2 1627 303 28 0 0 chr6 136624867 136624903 -12892134 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 2 1627 420 290 240 16 chr6 136624906 136625093 -12891944 + B4A SINE B4 3 231 -61 2 1627 776 196 167 11 chr6 136625095 136625281 -12891756 + B3 SINE B2 2 216 0 2 1627 231 200 39 20 chr6 136625439 136625490 -12891547 - ID4 SINE ID -11 72 21 2 1627 398 205 108 0 chr6 136625631 136625714 -12891323 + URR1A DNA MER1_type 1 92 -134 2 1627 1008 127 38 0 chr6 136625828 136625986 -12891051 + URR1A DNA MER1_type 63 226 0 2 1627 2132 107 91 6 chr6 136626671 136627010 -12890027 + ORR1B1 LTR MaLR 23 390 -4 2 1627 1169 115 17 11 chr6 136627215 136627391 -12889646 + B2_Mm2 SINE B2 2 178 -17 2 1627 324 0 0 0 chr6 136628271 136628307 -12888730 + (TAA)n Simple_repeat Simple_repeat 3 38 0 2 1627 397 180 35 138 chr6 136628316 136628432 -12888605 - RLTR23 LTR ERV1 -16 414 311 2 1627 1055 296 28 39 chr6 136628462 136628849 -12888188 + RLTR22_Mur LTR ERVK 416 798 -1050 2 1627 341 303 24 16 chr6 136628909 136629033 -12888004 + RLTR22_Mur LTR ERVK 1590 1714 -134 2 1627 5913 65 23 1 chr6 136629083 136629826 -12887211 + L1Md_F2 LINE L1 5813 6571 -11 2 1627 185 159 0 22 chr6 136629838 136629883 -12887154 + (TAA)n Simple_repeat Simple_repeat 1 44 0 2 1627 23 54 0 0 chr6 136629884 136629921 -12887116 + AT_rich Low_complexity Low_complexity 1 37 0 2 1627 560 309 0 65 chr6 136630111 136630326 -12886711 - RMER30 DNA MER1_type -1 201 1 2 1627 1053 233 27 31 chr6 136630321 136630642 -12886395 + RLTR26 LTR ERVK 1 363 -279 2 1627 1111 48 13 20 chr6 136630642 136630791 -12886246 - B1_Mus1 SINE Alu 0 148 1 2 1627 1053 243 19 30 chr6 136630791 136630820 -12886217 + RLTR26 LTR ERVK 364 390 -252 2 1627 3661 133 21 57 chr6 136630829 136631509 -12885528 + RMER17D LTR ERVK 233 887 -2 2 1627 1706 151 32 72 chr6 136631509 136631906 -12885131 + RMER17C LTR ERVK 30 410 0 2 1627 396 212 29 57 chr6 136631906 136632011 -12885026 - B3A SINE B2 -96 102 1 2 1627 502 187 28 9 chr6 136632225 136632333 -12884704 - B1F SINE Alu 0 149 40 2 1627 307 330 18 18 chr6 136632358 136632469 -12884568 + MER74C LTR ERVL 5 115 -345 2 1627 241 313 60 0 chr6 136632803 136632886 -12884151 + MTEb LTR MaLR 265 352 -27 2 1627 250 221 71 94 chr6 136632917 136633002 -12884035 - B1F2 SINE Alu -66 83 1 3 1627 5660 108 19 55 chr6 136633084 136634021 -12883016 + RMER17A2 LTR ERVK 1 903 -3 3 1627 386 275 9 29 chr6 136634022 136634127 -12882910 + RMER20B LTR ERVK 25 127 -500 3 1627 236 297 27 0 chr6 136634588 136634662 -12882375 + ID4 SINE ID 3 78 -5 3 1627 435 282 115 50 chr6 136634707 136634968 -12882069 - L1MC5 LINE L1 -279 7682 7405 3 1627 279 244 0 99 chr6 136635124 136635215 -12881822 - PB1D10 SINE Alu -1 116 35 3 1627 258 125 0 0 chr6 136635444 136635492 -12881545 + (TCTTG)n Simple_repeat Simple_repeat 5 52 0 3 1627 242 135 0 0 chr6 136635544 136635581 -12881456 - RMER10B LTR ERVL -50 348 312 3 1627 258 265 118 0 chr6 136635728 136635830 -12881207 - L1M3d LINE L1 -4736 1155 1042 3 1627 265 300 187 6 chr6 136635965 136636136 -12880901 - L1MC5 LINE L1 -2355 5527 5326 3 1627 215 245 102 0 chr6 136636242 136636291 -12880746 + ID4_ SINE ID 4 57 -26 3 1627 1056 146 0 0 chr6 136636294 136636686 -12880351 + (CA)n Simple_repeat Simple_repeat 1 392 0 3 1627 436 216 20 20 chr6 136636984 136637083 -12879954 - PB1D10 SINE Alu -1 116 18 3 1627 195 42 0 0 chr6 136637481 136637505 -12879532 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1627 281 265 71 10 chr6 136637506 136637605 -12879432 - PB1D10 SINE Alu -12 105 1 3 1627 489 42 127 0 chr6 136637695 136637766 -12879271 + B1_Mur4 SINE Alu 71 150 0 3 1627 1834 190 37 29 chr6 136638184 136638558 -12878479 + MTD LTR MaLR 23 399 -20 3 1627 325 221 44 0 chr6 136639140 136639208 -12877829 + ID4_ SINE ID 9 79 -4 3 1627 318 194 10 46 chr6 136639365 136639457 -12877580 + PB1D9 SINE Alu 30 117 -3 3 1627 373 273 16 47 chr6 136639766 136639893 -12877144 - L2 LINE L2 -848 2571 2449 3 1627 690 228 62 0 chr6 136639907 136640069 -12876968 + B3A SINE B2 1 172 -26 3 1627 2935 147 18 34 chr6 136642324 136642831 -12874206 - RLTR19 LTR ERVK 0 499 1 3 1627 269 215 108 0 chr6 136642852 136642917 -12874120 - MTD LTR MaLR -141 280 209 3 1627 606 28 0 0 chr6 136642917 136642989 -12874048 + (TC)n Simple_repeat Simple_repeat 2 73 0 3 1627 575 229 201 68 chr6 136643070 136643393 -12873644 - RLTR9A LTR ERVK 0 368 3 3 1627 964 240 25 26 chr6 136643852 136644089 -12872948 - MTD LTR MaLR -167 212 1 3 1627 610 290 0 0 chr6 136644089 136644234 -12872803 + B3A SINE B2 38 182 -16 3 1627 1200 61 0 13 chr6 136644656 136644806 -12872231 - B1_Mus1 SINE Alu 0 148 1 3 1627 933 241 181 10 chr6 136645003 136645301 -12871736 + ORR1E LTR MaLR 1 349 -10 3 1627 347 119 15 0 chr6 136645357 136645424 -12871613 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1627 485 188 0 23 chr6 136646116 136646203 -12870834 + ID_B1 SINE B4 135 219 -5 3 1627 252 0 0 0 chr6 136646207 136646235 -12870802 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 3 1627 224 205 0 0 chr6 136646847 136646886 -12870151 - B3A SINE B2 -159 39 1 3 1627 399 227 274 19 chr6 136646890 136646924 -12870113 - B3A SINE B2 0 198 162 3 1627 474 18 0 0 chr6 136646924 136646979 -12870058 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1627 189 0 0 0 chr6 136646979 136646999 -12870038 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 1627 399 227 274 19 chr6 136646999 136647120 -12869917 - B3A SINE B2 -37 161 3 3 1627 376 216 143 29 chr6 136647131 136647236 -12869801 - PB1D9 SINE Alu -1 119 3 3 1627 477 0 0 0 chr6 136647369 136647422 -12869615 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 3 1627 404 310 15 23 chr6 136648322 136648454 -12868583 - B1F SINE Alu -8 141 11 3 1627 778 280 39 5 chr6 136648544 136648752 -12868285 + B4A SINE B4 5 219 -73 3 1627 267 277 52 35 chr6 136648756 136648872 -12868165 + RSINE1 SINE B4 2 119 -46 3 1627 531 0 0 0 chr6 136648888 136648947 -12868090 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1627 280 288 0 15 chr6 136648981 136649048 -12867989 + B4A SINE B4 223 288 -4 3 1627 335 73 18 0 chr6 136649083 136649138 -12867899 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1627 540 100 0 0 chr6 136649144 136649224 -12867813 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1627 261 358 98 27 chr6 136649227 136649339 -12867698 - RSINE1 SINE B4 -26 139 20 3 1627 379 287 161 25 chr6 136649935 136650096 -12866941 + B4A SINE B4 108 290 -2 3 1627 197 360 133 6 chr6 136650188 136650353 -12866684 - MER5A DNA MER1_type -3 186 1 3 1627 244 310 43 19 chr6 136650488 136650649 -12866388 + (TG)n Simple_repeat Simple_repeat 1 165 0 3 1627 880 222 33 24 chr6 136650757 136650969 -12866068 - B3 SINE B2 0 216 3 3 1627 197 237 16 48 chr6 136652070 136652132 -12864905 + L2 LINE L2 2801 2860 -559 3 1627 206 278 93 0 chr6 136652288 136652342 -12864695 - MER5A DNA MER1_type -85 104 46 3 1627 189 0 0 0 chr6 136652835 136652856 -12864181 + (GGAA)n Simple_repeat Simple_repeat 2 22 0 3 1627 4253 94 17 2 chr6 136653248 136653826 -12863211 + Lx LINE L1 6064 6650 -4 3 1627 558 239 0 0 chr6 136653885 136654301 -12862736 + (TG)n Simple_repeat Simple_repeat 1 416 0 3 1627 350 272 55 51 chr6 136654573 136654798 -12862239 - L1MA5A LINE L1 -1548 5925 5703 3 1627 327 362 59 25 chr6 136654878 136655082 -12861955 + MER57D LTR ERV1 21 231 -180 3 1627 621 323 92 75 chr6 136655215 136655924 -12861113 + RMER13A LTR ERVK 30 770 -138 3 1627 607 263 34 22 chr6 136656227 136656406 -12860631 - B3A SINE B2 -16 182 2 3 1627 549 269 71 49 chr6 136657252 136657459 -12859578 + B3 SINE B2 1 198 0 3 1627 633 258 63 10 chr6 136657864 136658039 -12858998 - B3A SINE B2 -10 206 23 3 1627 878 226 59 15 chr6 136659037 136659239 -12857798 - B3 SINE B2 -5 211 1 3 1627 214 347 19 47 chr6 136659240 136659346 -12857691 - MIR SINE MIR -57 151 49 3 1627 597 293 24 32 chr6 136659918 136660148 -12856889 + B3A SINE B2 1 212 -4 3 1627 378 207 17 0 chr6 136661940 136662114 -12854923 + (TG)n Simple_repeat Simple_repeat 1 177 0 3 1627 508 339 30 6 chr6 136662363 136662529 -12854508 + MER5B DNA MER1_type 7 176 -2 3 1627 253 304 43 0 chr6 136662777 136662846 -12854191 - MIR3 SINE MIR -15 193 122 3 1627 183 129 0 0 chr6 136662868 136662899 -12854138 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1627 369 250 216 42 chr6 136663156 136663323 -12853714 + B3A SINE B2 3 198 0 3 1627 1004 196 28 6 chr6 136663375 136663555 -12853482 + B3 SINE B2 1 184 -32 3 1627 714 55 0 0 chr6 136663563 136663654 -12853383 + (TA)n Simple_repeat Simple_repeat 2 92 0 3 1627 772 221 39 0 chr6 136663884 136664038 -12852999 - B3A SINE B2 -38 160 1 3 1627 1300 20 0 0 chr6 136664272 136664418 -12852619 + B1_Mm SINE Alu 2 147 0 3 1627 594 128 0 0 chr6 136664976 136665070 -12851967 + (CA)n Simple_repeat Simple_repeat 2 95 0 3 1627 427 330 56 10 chr6 136665888 136666084 -12850953 + MER2 DNA MER2_type 141 345 0 3 1627 208 72 0 67 chr6 136666150 136666195 -12850842 + (TGGGGG)n Simple_repeat Simple_repeat 5 46 0 3 1627 562 209 30 0 chr6 136666297 136666413 -12850624 - B1F SINE Alu -1 119 1 3 1627 308 161 16 0 chr6 136666483 136666545 -12850492 + CT-rich Low_complexity Low_complexity 1 63 0 3 1627 656 246 99 41 chr6 136666545 136666574 -12850463 - ID_B1 SINE B4 -46 246 214 3 1627 1250 83 0 11 chr6 136666574 136666756 -12850281 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1627 656 201 73 15 chr6 136666756 136666879 -12850158 - ID_B1 SINE B4 -11 213 81 3 1627 273 238 35 59 chr6 136667003 136667088 -12849949 - B1_Mus1 SINE Alu -46 102 20 3 1627 370 317 248 25 chr6 136667332 136667727 -12849310 - MER44B DNA MER2_type -1 549 40 3 1627 447 19 0 0 chr6 136667727 136667779 -12849258 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1627 266 313 28 56 chr6 136667807 136667949 -12849088 + MLT1D LTR MaLR 86 223 -282 3 1627 735 12 0 0 chr6 136668699 136668783 -12848254 + (CAAG)n Simple_repeat Simple_repeat 3 86 0 3 1627 533 222 51 0 chr6 136668847 136668964 -12848073 - ID_B1 SINE B4 -11 213 91 3 1627 423 337 72 29 chr6 136669539 136669817 -12847220 + B4A SINE B4 2 291 -1 3 1627 225 265 29 0 chr6 136669822 136669890 -12847147 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 1627 795 265 59 0 chr6 136670529 136670733 -12846304 + B3 SINE B2 1 216 0 3 1627 191 61 30 0 chr6 136670847 136670880 -12846157 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1627 332 22 0 22 chr6 136671417 136671463 -12845574 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1627 401 221 57 120 chr6 136671464 136671639 -12845398 - RSINE1 SINE B4 0 165 2 3 1627 775 260 33 91 chr6 136671639 136671879 -12845158 - B4 SINE B4 -65 227 2 3 1627 201 108 0 0 chr6 136672660 136672697 -12844340 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 3 1627 423 0 0 0 chr6 136672701 136672748 -12844289 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 1627 349 247 0 66 chr6 136672791 136672882 -12844155 + PB1D7 SINE Alu 36 120 0 3 1627 548 143 40 30 chr6 136673017 136673118 -12843919 + ID_B1 SINE B4 115 216 -8 3 1627 492 152 19 57 chr6 136673025 136673130 -12843907 + B1F SINE Alu 48 148 -1 3 1627 267 261 36 164 chr6 136673293 136673371 -12843666 - B1F1 SINE Alu -5 144 14 3 1627 292 222 123 0 chr6 136673371 136673452 -12843585 - ID_B1 SINE B4 -45 179 89 3 1627 180 111 0 0 chr6 136674669 136674696 -12842341 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 3 1627 524 286 58 68 chr6 136674942 136675220 -12841817 + B4A SINE B4 1 275 -17 3 1627 414 149 0 0 chr6 136675240 136675327 -12841710 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1627 558 205 22 80 chr6 136676086 136676132 -12840905 - B3 SINE B2 -6 210 164 4 1627 225 0 0 0 chr6 136676132 136676157 -12840880 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1627 558 205 22 80 chr6 136676157 136676248 -12840789 - B3 SINE B2 -53 163 81 4 1627 315 0 0 0 chr6 136676767 136676802 -12840235 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1627 231 146 0 0 chr6 136677176 136677217 -12839820 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 4 1627 2458 137 85 3 chr6 136678464 136678853 -12838184 + MTC LTR MaLR 1 421 0 4 1627 3296 230 48 117 chr6 136678855 136679125 -12837912 + MTC-int LTR MaLR 1 244 -854 4 1627 1519 62 0 10 chr6 136679125 136679322 -12837715 + B2_Mm2 SINE B2 1 195 0 4 1627 3296 230 48 117 chr6 136679322 136680078 -12836959 + MTC-int LTR MaLR 245 978 -120 4 1627 3581 18 2 0 chr6 136680078 136680473 -12836564 + MTA_Mm LTR MaLR 1 396 0 4 1627 3296 230 48 117 chr6 136680473 136680625 -12836412 + MTC-int LTR MaLR 979 1098 0 4 1627 516 136 12 0 chr6 136680625 136680706 -12836331 + MTC LTR MaLR 1 82 -339 4 1627 8311 102 27 6 chr6 136680840 136682853 -12834184 + Lx LINE L1 4603 6647 -7 4 1627 1567 117 39 10 chr6 136682905 136683200 -12833837 + MTC LTR MaLR 87 419 0 4 1627 318 274 39 60 chr6 136683618 136683758 -12833279 + LTR45 LTR ERV1 356 498 -41 4 1627 765 199 0 0 chr6 136683785 136683956 -12833081 + CT-rich Low_complexity Low_complexity 1 171 0 4 1627 279 237 8 25 chr6 136683974 136684095 -12832942 + CT-rich Low_complexity Low_complexity 2 120 0 4 1627 251 172 50 33 chr6 136684484 136684544 -12832493 + ORR1E LTR MaLR 153 213 -146 4 1627 476 84 63 46 chr6 136684840 136685015 -12832022 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 4 1627 746 89 9 0 chr6 136685028 136685140 -12831897 + (CCTA)n Simple_repeat Simple_repeat 3 115 0 4 1627 701 279 111 28 chr6 136685472 136685760 -12831277 + ORR1E LTR MaLR 3 314 -45 4 1627 574 244 9 0 chr6 136686382 136686497 -12830540 + ID_B1 SINE B4 99 214 -10 4 1627 246 95 0 0 chr6 136686778 136686820 -12830217 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1627 192 167 27 14 chr6 136686895 136686968 -12830069 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1627 211 319 14 27 chr6 136686978 136687052 -12829985 - RSINE1 SINE B4 -10 155 83 4 1627 519 265 89 44 chr6 136687035 136687260 -12829777 - B4A SINE B4 -57 235 1 4 1627 487 214 107 0 chr6 136688621 136688724 -12828313 - PB1D10 SINE Alu -1 116 3 4 1627 576 0 0 0 chr6 136689383 136689447 -12827590 + (TCCCC)n Simple_repeat Simple_repeat 4 67 0 4 1627 270 0 0 0 chr6 136689818 136689848 -12827189 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1627 575 117 11 0 chr6 136690168 136690262 -12826775 + (GA)n Simple_repeat Simple_repeat 1 95 0 4 1627 21 0 0 0 chr6 136690298 136690319 -12826718 + AT_rich Low_complexity Low_complexity 1 21 0 4 1627 215 326 11 0 chr6 136690683 136690775 -12826262 + C-rich Low_complexity Low_complexity 5 97 0 4 1627 590 227 38 0 chr6 136691267 136691399 -12825638 - B1F SINE Alu -2 147 11 4 1627 433 295 43 37 chr6 136691399 136691429 -12825608 - ID_B1 SINE B4 -4 220 58 4 1627 381 22 0 0 chr6 136691740 136691786 -12825251 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1627 186 193 0 0 chr6 136691789 136691846 -12825191 + (TATAA)n Simple_repeat Simple_repeat 3 59 0 4 1627 357 289 0 43 chr6 136692637 136692655 -12824382 - ID_B1 SINE B4 -53 171 82 4 1627 372 237 40 0 chr6 136692655 136692731 -12824306 - B1F SINE Alu -70 79 1 4 1627 751 93 0 17 chr6 136693362 136693482 -12823555 + (TCCC)n Simple_repeat Simple_repeat 4 121 0 4 1627 663 179 6 0 chr6 136693482 136693671 -12823366 + CT-rich Low_complexity Low_complexity 1 190 0 4 1627 710 231 0 0 chr6 136693710 136693840 -12823197 - RSINE1 SINE B4 -34 131 2 4 1627 1640 192 146 11 chr6 136694334 136694698 -12822339 - MTC LTR MaLR -8 413 1 4 1627 10511 131 84 9 chr6 136694715 136696542 -12820495 + ORR1A2-int LTR MaLR 1 1963 0 4 1627 2482 89 3 0 chr6 136696542 136696868 -12820169 + ORR1A2 LTR MaLR 1 327 0 4 1627 404 333 110 8 chr6 136697901 136698028 -12819009 + RSINE1 SINE B4 12 151 -14 4 1627 1352 97 16 0 chr6 136698458 136698644 -12818393 - B2_Mm2 SINE B2 -6 189 1 4 1627 201 143 48 0 chr6 136698808 136698850 -12818187 + A-rich Low_complexity Low_complexity 6 49 0 4 1627 597 98 27 0 chr6 136698896 136699008 -12818029 + (TG)n Simple_repeat Simple_repeat 2 116 0 4 1627 549 259 23 0 chr6 136700259 136700390 -12816647 - RSINE1 SINE B4 -28 137 4 4 1627 3402 33 5 5 chr6 136700779 136701175 -12815862 + MTA_Mm LTR MaLR 1 396 0 4 1627 6894 59 26 4 chr6 136701175 136702191 -12814846 + MTA_Mm-int LTR MaLR 3 1098 0 4 1627 494 21 7 7 chr6 136702202 136702266 -12814771 + MTB LTR MaLR 283 400 0 4 1627 354 194 0 0 chr6 136702298 136702365 -12814672 + L1Md_F LINE L1 473 539 -5980 4 1627 34428 67 12 1 chr6 136702355 136707353 -12809684 + L1Md_F LINE L1 534 5586 -297 4 203 8122 45 1 22 chr6 136707353 136708358 -12808679 + L1Md_F2 LINE L1 5587 6570 -12 4 1628 34428 63 1 1 chr6 136708358 136708393 -12808644 + L1Md_F LINE L1 5587 5624 -259 4 1628 620 298 6 57 chr6 136708442 136708654 -12808383 + B4A SINE B4 28 225 -67 4 1628 705 235 60 13 chr6 136708661 136708812 -12808225 + B3A SINE B2 3 160 -38 4 1628 588 29 0 0 chr6 136708818 136708888 -12808149 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1628 249 108 0 0 chr6 136708890 136708927 -12808110 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1628 324 127 0 0 chr6 136708929 136708984 -12808053 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 4 1628 576 0 0 0 chr6 136709742 136709806 -12807231 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1628 258 214 85 106 chr6 136709815 136709909 -12807128 - B4 SINE B4 0 292 201 4 1628 1214 68 0 0 chr6 136710048 136710196 -12806841 + B1_Mus1 SINE Alu 1 148 0 4 1628 521 0 31 0 chr6 136710934 136710998 -12806039 + (TCTCTG)n Simple_repeat Simple_repeat 5 70 0 4 1628 1179 97 0 0 chr6 136711722 136711948 -12805089 + (TTCC)n Simple_repeat Simple_repeat 1 226 0 4 1628 616 257 7 0 chr6 136711951 136712087 -12804950 - B1F SINE Alu -9 140 4 4 1628 452 217 193 34 chr6 136712602 136712721 -12804316 - B1_Mur2 SINE Alu -3 146 9 4 1628 1072 67 0 0 chr6 136713605 136713739 -12803298 + B1_Mus1 SINE Alu 7 140 -8 4 1628 594 128 0 0 chr6 136714314 136714408 -12802629 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 4 1628 643 261 0 64 chr6 136714924 136715096 -12801941 - RSINE1 SINE B4 0 165 5 4 1628 2126 175 45 15 chr6 136716005 136716406 -12800631 + MTD LTR MaLR 5 417 -2 4 1628 1866 176 53 89 chr6 136716480 136716822 -12800215 + MTC LTR MaLR 1 335 -86 4 1628 3554 108 60 0 chr6 136716822 136717358 -12799679 + Lx3C LINE L1 6407 6974 -2 4 1628 1866 176 53 89 chr6 136717358 136717452 -12799585 + MTC LTR MaLR 336 421 0 4 1628 357 43 0 0 chr6 136717559 136717606 -12799431 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1628 3037 279 77 54 chr6 136719140 136719810 -12797227 - L1_Mur3 LINE L1 -552 5328 4614 4 1628 378 0 0 0 chr6 136719810 136719852 -12797185 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1628 3037 279 77 54 chr6 136719852 136720206 -12796831 - L1_Mur3 LINE L1 -1267 4613 4257 4 1628 1073 85 132 18 chr6 136720206 136720373 -12796664 - B2_Mm2 SINE B2 -9 186 1 4 1628 3037 279 77 54 chr6 136720373 136720850 -12796187 - L1_Mur3 LINE L1 -1624 4256 3782 4 1628 1065 135 129 10 chr6 136720850 136721052 -12795985 + URR1A DNA MER1_type 1 226 0 4 1628 3037 279 77 54 chr6 136721052 136721091 -12795946 - L1_Mur3 LINE L1 -2099 3781 3749 4 1628 198 0 0 0 chr6 136721091 136721113 -12795924 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1628 3037 269 41 69 chr6 136721113 136721620 -12795417 - L1_Mur3 LINE L1 -2132 3748 3738 4 1628 531 0 0 0 chr6 136721758 136721817 -12795220 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1628 1392 47 0 6 chr6 136721981 136722154 -12794883 + B2_Mm2 SINE B2 2 173 -22 4 1628 186 43 0 0 chr6 136722155 136722178 -12794859 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1628 1777 203 107 68 chr6 136722417 136722930 -12794107 + MT2A LTR ERVL 1 533 0 4 1628 241 255 67 67 chr6 136723092 136723197 -12793840 - L1MD2 LINE L1 -238 6121 6017 4 1628 676 307 122 62 chr6 136723492 136724203 -12792834 - L2a LINE L2 -300 3126 2376 4 1628 603 237 67 26 chr6 136724330 136724485 -12792552 - B3 SINE B2 -51 165 6 4 1628 226 340 28 19 chr6 136724560 136724668 -12792369 + LTR84b LTR ERVL 555 663 -98 4 1628 228 299 76 55 chr6 136724721 136724866 -12792171 + MIRc SINE MIR 22 169 -99 4 1628 438 273 27 18 chr6 136725309 136725421 -12791616 - RSINE1 SINE B4 -28 137 25 4 1628 807 221 12 30 chr6 136725543 136725711 -12791326 + B3 SINE B2 24 188 -28 4 1628 621 326 133 16 chr6 136726784 136727161 -12789876 + Charlie1b DNA MER1_type 62 482 -41 4 1628 243 180 20 0 chr6 136727384 136727434 -12789603 + MTD LTR MaLR 5 55 -364 4 1628 336 323 37 22 chr6 136728292 136728428 -12788609 - MIRc SINE MIR -98 170 33 4 1628 21 57 0 0 chr6 136729400 136729435 -12787602 + AT_rich Low_complexity Low_complexity 1 35 0 4 1628 336 336 52 55 chr6 136730741 136731068 -12785969 - L2c LINE L2 -143 3244 2919 4 1628 620 270 105 94 chr6 136731189 136731475 -12785562 - B4A SINE B4 0 292 4 4 1628 242 333 21 21 chr6 136731632 136731727 -12785310 - L2c LINE L2 -782 2637 2543 4 1628 750 221 102 17 chr6 136732369 136732573 -12784464 - B3A SINE B2 -1 215 8 4 1628 383 218 66 47 chr6 136733338 136733444 -12783593 + PB1D10 SINE Alu 1 108 -9 4 1628 450 0 0 0 chr6 136734280 136734330 -12782707 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 4 1628 2026 111 8 109 chr6 136735342 136735708 -12781329 - ORR1A4 LTR MaLR 0 329 1 4 1628 395 262 246 22 chr6 136735752 136735935 -12781102 + MTEa LTR MaLR 1 224 -155 4 1628 6025 68 6 0 chr6 136735936 136736797 -12780240 - L1_Mus3 LINE L1 -300 6338 5474 4 1628 640 62 0 0 chr6 136736852 136736933 -12780104 - ORR1B1 LTR MaLR 0 394 314 4 1628 683 128 168 0 chr6 136736931 136737056 -12779981 - ORR1B1 LTR MaLR -246 148 3 4 1628 259 302 0 0 chr6 136737190 136737243 -12779794 - ID4 SINE ID -4 79 27 4 1628 246 323 0 16 chr6 136737192 136737255 -12779782 - ID SINE ID -146 78 17 4 1628 495 285 22 0 chr6 136737259 136737396 -12779641 - B1F SINE Alu -9 140 1 4 1628 198 0 0 0 chr6 136737419 136737441 -12779596 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1628 306 0 0 0 chr6 136737549 136737583 -12779454 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 4 1628 586 266 16 8 chr6 136737597 136737726 -12779311 - ID_B1 SINE B4 -11 213 84 4 1628 437 246 25 33 chr6 136738315 136738437 -12778600 + B1F SINE Alu 29 149 0 5 1628 463 120 58 23 chr6 136738595 136738766 -12778271 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 5 1628 1191 62 0 0 chr6 136738890 136739036 -12778001 + B1_Mus2 SINE Alu 1 146 -1 5 1628 240 280 160 11 chr6 136740492 136740586 -12776451 - PB1D10 SINE Alu -9 108 1 5 1628 322 305 39 8 chr6 136740586 136740662 -12776375 - ID SINE ID -144 80 1 5 1628 656 224 28 33 chr6 136740827 136740985 -12776052 + B3A SINE B2 1 163 -32 5 1628 492 62 0 0 chr6 136740985 136741049 -12775988 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1628 377 321 58 37 chr6 136741049 136741081 -12775956 + B2_Mm2 SINE B2 164 194 -1 5 1628 242 252 414 0 chr6 136741114 136741225 -12775812 + RSINE1 SINE B4 5 161 -4 5 1628 249 0 0 0 chr6 136741343 136741383 -12775654 + Lx2 LINE L1 6958 6997 0 5 1628 229 207 52 0 chr6 136742873 136742931 -12774106 + G-rich Low_complexity Low_complexity 6 66 0 5 1628 192 152 0 0 chr6 136743129 136743162 -12773875 + (CGA)n Simple_repeat Simple_repeat 2 34 0 5 1628 38 39 0 0 chr6 136743335 136743387 -12773650 + AT_rich Low_complexity Low_complexity 1 52 0 5 1628 839 179 40 45 chr6 136743470 136743646 -12773391 + B3 SINE B2 41 215 -1 5 1628 580 259 150 11 chr6 136743796 136743983 -12773054 + MTD LTR MaLR 1 213 -206 5 1628 708 206 0 22 chr6 136744004 136744188 -12772849 + G-rich Low_complexity Low_complexity 1 180 0 5 1628 376 227 70 8 chr6 136744189 136744330 -12772707 + MTD LTR MaLR 203 387 -32 5 1628 350 379 40 0 chr6 136744398 136744510 -12772527 + L2 LINE L2 2686 2802 -617 5 1628 2066 131 93 75 chr6 136744510 136744897 -12772140 + ORR1B1 LTR MaLR 1 394 0 5 1628 350 379 40 0 chr6 136744897 136744961 -12772076 + L2 LINE L2 2803 2868 -551 5 1628 23 33 0 0 chr6 136745057 136745087 -12771950 + AT_rich Low_complexity Low_complexity 1 30 0 5 1628 1016 185 68 11 chr6 136745087 136745278 -12771759 - B3 SINE B2 -3 213 12 5 1628 391 94 0 0 chr6 136745855 136745908 -12771129 + B1_Mus2 SINE Alu 17 69 -78 5 1628 752 279 75 36 chr6 136745963 136746268 -12770769 + Charlie5 DNA MER1_type 1702 2018 -606 5 1628 969 136 0 0 chr6 136746282 136746459 -12770578 + (TG)n Simple_repeat Simple_repeat 2 178 0 5 1628 327 266 156 0 chr6 136746464 136746573 -12770464 - B3 SINE B2 -66 150 25 5 1628 1318 190 149 39 chr6 136746589 136746637 -12770400 + RMER10A LTR ERVL 1 74 -368 5 1628 2960 32 6 0 chr6 136746637 136746979 -12770058 + ORR1A1 LTR MaLR 3 346 0 5 1628 1318 190 149 39 chr6 136746979 136747319 -12769718 + RMER10A LTR ERVL 75 431 -11 5 1628 306 125 0 0 chr6 136747319 136747367 -12769670 + (TCCC)n Simple_repeat Simple_repeat 4 51 0 5 1628 908 300 115 73 chr6 136747393 136747958 -12769079 + Charlie5 DNA MER1_type 2013 2601 -23 5 1628 533 136 111 46 chr6 136748237 136748317 -12768720 - B2_Mm2 SINE B2 -76 119 31 5 1628 4851 60 2 2 chr6 136748317 136748904 -12768133 + LTRIS_Mus LTR ERV1 1 587 0 5 1628 533 136 111 46 chr6 136748904 136748931 -12768106 - B2_Mm2 SINE B2 -165 30 5 5 1628 387 0 0 0 chr6 136748937 136748980 -12768057 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1628 407 239 0 0 chr6 136749095 136749166 -12767871 - ID4 SINE ID -11 72 2 5 1628 239 238 110 24 chr6 136749499 136749581 -12767456 + MTE2a LTR MaLR 35 123 -296 5 1628 369 247 45 34 chr6 136749649 136749737 -12767300 + MTE2a LTR MaLR 233 321 -58 5 1628 389 125 45 0 chr6 136750119 136750207 -12766830 + (CA)n Simple_repeat Simple_repeat 1 92 0 5 1628 884 132 63 38 chr6 136750271 136750504 -12766533 - IAPLTR1_Mm LTR ERVK 0 475 211 5 1628 256 314 0 0 chr6 136750504 136750574 -12766463 + GA-rich Low_complexity Low_complexity 2 71 0 5 1628 1632 112 46 27 chr6 136750574 136750956 -12766081 - IAPLTR2b LTR ERVK -82 393 1 5 1628 207 0 0 0 chr6 136751493 136751516 -12765521 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1628 252 333 21 0 chr6 136753565 136753576 -12763461 + ID_B1 SINE B4 75 172 -52 5 1628 375 224 47 0 chr6 136753576 136753661 -12763376 + B1F SINE Alu 6 94 -55 5 1628 1470 78 16 0 chr6 136753783 136753974 -12763063 + B2_Mm2 SINE B2 2 195 0 5 1628 200 189 28 42 chr6 136754221 136754293 -12762744 + (CAAA)n Simple_repeat Simple_repeat 3 73 0 5 1628 472 324 0 62 chr6 136754632 136754793 -12762244 - ID_B1 SINE B4 -1 223 73 5 1628 631 149 71 50 chr6 136755357 136755498 -12761539 + B1_Mus2 SINE Alu 3 146 -1 5 1628 1187 139 80 165 chr6 136755858 136756306 -12760731 - RMER17C LTR ERVK 0 410 1 5 1628 477 240 58 58 chr6 136756312 136756449 -12760588 - B1F SINE Alu 0 149 13 5 1628 304 263 72 21 chr6 136756506 136756603 -12760434 - B1F SINE Alu -37 112 11 5 1628 217 299 66 85 chr6 136757896 136757928 -12759109 + PB1D9 SINE Alu 9 112 -8 5 1628 307 246 0 14 chr6 136757928 136758002 -12759035 + ID_B1 SINE B4 144 216 -8 5 1628 389 235 160 0 chr6 136759170 136759289 -12757748 + B1_Mus2 SINE Alu 1 138 -9 5 1628 1089 213 144 30 chr6 136760056 136760390 -12756647 - ORR1D1 LTR MaLR 0 374 3 5 1628 785 216 130 40 chr6 136760566 136760906 -12756131 + MTD LTR MaLR 9 419 0 5 1628 384 202 163 39 chr6 136760906 136761034 -12756003 + RMER15 LTR ERVL 418 561 -14 5 1628 514 220 91 45 chr6 136761729 136761905 -12755132 - ORR1D2 LTR MaLR -185 185 2 5 1628 1050 103 102 17 chr6 136763233 136763410 -12753627 + B2_Mm2 SINE B2 2 193 -2 5 1628 1325 41 102 23 chr6 136763416 136763576 -12753461 + B2_Mm1a SINE B2 1 156 -37 5 1628 603 0 0 0 chr6 136763576 136763643 -12753394 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 5 1628 1325 41 102 23 chr6 136763643 136763658 -12753379 + B2_Mm1a SINE B2 157 188 -5 5 1628 633 207 44 0 chr6 136765828 136765963 -12751074 + B1_Mus2 SINE Alu 1 141 -6 5 1628 186 43 0 0 chr6 136765965 136765988 -12751049 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1628 260 286 29 58 chr6 136766119 136766223 -12750814 + RSINE1 SINE B4 12 112 -53 5 1628 371 265 112 0 chr6 136767361 136767473 -12749564 + B1_Mur4 SINE Alu 16 139 -11 5 1628 279 0 0 0 chr6 136768071 136768102 -12748935 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1628 195 202 45 9 chr6 136768265 136768375 -12748662 + (TA)n Simple_repeat Simple_repeat 1 114 0 5 1628 454 261 0 43 chr6 136768659 136768775 -12748262 + PB1D7 SINE Alu 2 112 -8 5 1628 298 225 45 0 chr6 136771104 136771193 -12745844 - L1M5 LINE L1 -635 5809 5717 5 1628 3647 49 4 13 chr6 136772083 136772539 -12744498 - L1Md_F2 LINE L1 0 6582 6131 5 1628 345 228 26 114 chr6 136773480 136773594 -12743443 - PB1D10 SINE Alu -13 104 1 5 1628 530 282 10 53 chr6 136773624 136773830 -12743207 - B3A SINE B2 -1 197 1 5 1628 221 156 22 0 chr6 136774784 136774813 -12742224 + T-rich Low_complexity Low_complexity 20 49 0 5 1628 1258 20 0 26 chr6 136774813 136774964 -12742073 - B1_Mus2 SINE Alu 0 147 1 5 1628 221 156 22 0 chr6 136774964 136774979 -12742058 + T-rich Low_complexity Low_complexity 5 19 0 5 1628 2782 115 196 0 chr6 136777325 136777805 -12739232 - MT2B2 LTR ERVL -10 574 1 5 1628 200 122 0 39 chr6 136777922 136777973 -12739064 + A-rich Low_complexity Low_complexity 2 50 0 5 1628 333 261 231 33 chr6 136780526 136780708 -12736329 - ID_B1 SINE B4 -6 218 1 5 1628 280 304 12 12 chr6 136780812 136780892 -12736145 + RSINE1 SINE B4 1 80 -85 5 1628 786 180 14 14 chr6 136781071 136781212 -12735825 + B1_Mur1 SINE Alu 1 141 -8 5 1628 399 41 0 0 chr6 136781455 136781504 -12735533 + (TTA)n Simple_repeat Simple_repeat 2 50 0 5 1628 482 299 8 0 chr6 136781512 136781629 -12735408 - B1_Mur1 SINE Alu -29 120 3 5 1628 22 35 0 0 chr6 136781643 136781672 -12735365 + AT_rich Low_complexity Low_complexity 1 29 0 5 1628 252 59 0 0 chr6 136781751 136781785 -12735252 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1628 1066 96 14 0 chr6 136781785 136781931 -12735106 - B1_Mus1 SINE Alu 0 148 1 5 1628 453 231 51 0 chr6 136782503 136782620 -12734417 - RSINE1 SINE B4 -38 127 5 5 1628 579 29 0 0 chr6 136783007 136783076 -12733961 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1628 423 252 133 87 chr6 136784439 136784761 -12732276 - Lx9 LINE L1 -44 7600 7264 5 1628 665 258 77 0 chr6 136784789 136784983 -12732054 - B3 SINE B2 -6 210 2 5 1628 207 0 0 0 chr6 136785499 136785522 -12731515 + (CAGGA)n Simple_repeat Simple_repeat 2 24 0 5 1628 789 11 0 0 chr6 136786147 136786237 -12730800 + (GA)n Simple_repeat Simple_repeat 2 91 0 5 1628 1095 247 132 24 chr6 136786520 136786860 -12730177 + MTE2a LTR MaLR 1 377 -2 5 1628 434 301 19 52 chr6 136787216 136787370 -12729667 - RSINE1 SINE B4 -11 154 6 5 1628 756 168 80 7 chr6 136787678 136787816 -12729221 - B1_Mur1 SINE Alu -1 148 1 5 1628 2536 174 80 36 chr6 136789839 136790363 -12726674 - RMER19B LTR ERVK -7 895 349 5 1628 1079 167 23 166 chr6 136790366 136790631 -12726406 - RMER19B LTR ERVK -675 227 1 5 1628 471 275 53 88 chr6 136791245 136791472 -12725565 + Lx7 LINE L1 7132 7350 -346 5 1628 345 162 0 0 chr6 136791540 136791608 -12725429 + GA-rich Low_complexity Low_complexity 1 68 0 5 1628 24 53 0 0 chr6 136791676 136791714 -12725323 + AT_rich Low_complexity Low_complexity 1 38 0 5 1628 816 226 18 31 chr6 136791835 136792059 -12724978 + ID_B1 SINE B4 2 222 -2 5 1628 201 108 0 0 chr6 136792183 136792220 -12724817 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1628 632 263 54 59 chr6 136792228 136792414 -12724623 - B3 SINE B2 0 216 32 5 1628 2318 95 13 0 chr6 136792569 136792884 -12724153 + ORR1A2 LTR MaLR 1 319 -8 5 1628 826 255 19 47 chr6 136793067 136793088 -12723949 - B4A SINE B4 0 292 273 5 1628 438 20 0 0 chr6 136793088 136793139 -12723898 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1628 826 255 19 47 chr6 136793139 136793331 -12723706 - B4A SINE B4 -20 272 85 5 1628 198 0 0 0 chr6 136793733 136793755 -12723282 + (CAAAC)n Simple_repeat Simple_repeat 5 26 0 5 1628 213 65 0 0 chr6 136793918 136793949 -12723088 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1628 584 252 58 6 chr6 136793968 136794124 -12722913 - RSINE1 SINE B4 0 165 2 6 1628 371 346 63 99 chr6 136794678 136794980 -12722057 - B4A SINE B4 0 292 2 6 1628 711 149 0 0 chr6 136795286 136795407 -12721630 + (TATATG)n Simple_repeat Simple_repeat 3 123 0 6 1628 2337 133 33 6 chr6 136795428 136795791 -12721246 + MTC LTR MaLR 49 421 0 6 1628 261 349 112 18 chr6 136796987 136797156 -12719881 - MLT1K LTR MaLR -71 524 340 6 1628 636 242 68 11 chr6 136797600 136797793 -12719244 + ORR1E LTR MaLR 1 202 -182 6 1628 428 244 2 74 chr6 136798242 136798363 -12718674 + PB1D9 SINE Alu 1 111 -9 6 1628 471 18 0 0 chr6 136798364 136798420 -12718617 + (TATG)n Simple_repeat Simple_repeat 2 57 0 6 1628 559 156 31 0 chr6 136798421 136798517 -12718520 - B1_Mur1 SINE Alu -9 140 42 6 1628 231 293 81 142 chr6 136798440 136798550 -12718487 - ID_B1 SINE B4 -26 198 1 6 1628 452 248 20 0 chr6 136798550 136798651 -12718386 - B3A SINE B2 -95 103 1 6 1628 414 250 72 33 chr6 136798861 136799014 -12718023 + ORR1E LTR MaLR 207 365 -14 6 1628 183 129 0 0 chr6 136799124 136799155 -12717882 + (CAT)n Simple_repeat Simple_repeat 1 31 0 6 1628 730 255 33 42 chr6 136799305 136799518 -12717519 - B4A SINE B4 0 292 82 6 1628 278 380 85 4 chr6 136800715 136800974 -12716063 + L2a LINE L2 3051 3330 -96 6 1628 463 292 44 38 chr6 136800998 136801158 -12715879 - B3A SINE B2 -37 161 1 6 1628 516 16 0 0 chr6 136801716 136801777 -12715260 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1628 596 273 201 25 chr6 136802147 136802568 -12714469 + MER44D DNA MER2_type 54 694 -11 6 1628 311 224 0 23 chr6 136802718 136802805 -12714232 + GA-rich Low_complexity Low_complexity 4 88 0 6 1628 277 316 145 0 chr6 136803943 136804060 -12712977 + B1F SINE Alu 5 138 -11 6 1628 889 270 10 75 chr6 136804125 136804433 -12712604 - B4A SINE B4 -2 290 3 6 1628 22 0 0 0 chr6 136805518 136805540 -12711497 + AT_rich Low_complexity Low_complexity 1 22 0 6 1628 387 0 0 0 chr6 136806837 136806880 -12710157 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1628 252 59 0 0 chr6 136806962 136806996 -12710041 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1628 388 171 36 24 chr6 136806996 136807080 -12709957 - B4A SINE B4 -33 259 175 6 1628 781 256 33 19 chr6 136807243 136807458 -12709579 - ID_B1 SINE B4 -4 220 3 6 1628 264 244 58 58 chr6 136807462 136807481 -12709556 - B1F1 SINE Alu -45 104 89 6 1628 441 0 0 0 chr6 136807481 136807530 -12709507 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1628 315 250 15 0 chr6 136807530 136807598 -12709439 - PB1D10 SINE Alu -32 85 17 6 1628 526 250 44 0 chr6 136807876 136808012 -12709025 - B1_Mur1 SINE Alu -6 143 2 6 1628 885 241 0 48 chr6 136808264 136808491 -12708546 + B3 SINE B2 1 216 0 6 1628 337 244 96 95 chr6 136808568 136808759 -12708278 - L1MD2 LINE L1 -230 6012 5826 6 1628 736 207 34 119 chr6 136809264 136809500 -12707537 - B3 SINE B2 0 216 1 6 1628 324 0 0 0 chr6 136810191 136810227 -12706810 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 6 1628 910 300 89 36 chr6 136810353 136810823 -12706214 - Lx8 LINE L1 -28 7445 6951 6 1628 285 350 30 0 chr6 136811197 136811297 -12705740 + B4 SINE B4 1 103 -189 6 1628 432 0 0 0 chr6 136811759 136811807 -12705230 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1628 427 234 112 8 chr6 136812149 136812274 -12704763 - ID_B1 SINE B4 0 224 87 6 1628 916 235 29 5 chr6 136813537 136813742 -12703295 + B3 SINE B2 1 210 -6 6 1628 282 284 15 0 chr6 136813923 136813990 -12703047 - ID4 SINE ID -1 82 15 6 1628 323 239 81 49 chr6 136813966 136814089 -12702948 - B1_Mur2 SINE Alu -13 136 10 6 1628 621 239 96 6 chr6 136814007 136814163 -12702874 - ID_B1 SINE B4 -50 174 5 6 1628 465 118 29 0 chr6 136815359 136815427 -12701610 - RMER1B Other Other -143 923 854 6 1628 444 198 0 23 chr6 136815427 136815515 -12701522 - RMER1B Other Other -158 908 823 6 1628 298 339 115 28 chr6 136815621 136815803 -12701234 + Lx8 LINE L1 7081 7278 -195 6 1628 840 176 0 6 chr6 136815827 136816196 -12700841 + (CA)n Simple_repeat Simple_repeat 1 366 0 6 1628 827 173 188 11 chr6 136817403 136817584 -12699453 - URR1B DNA MER1_type -9 216 4 6 1628 8505 30 5 0 chr6 136818329 136819316 -12697721 - L1Md_F2 LINE L1 -1 6581 5590 6 1628 420 20 0 0 chr6 136819874 136819923 -12697114 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1628 603 231 126 47 chr6 136820178 136820369 -12696668 + RMER15 LTR ERVL 344 549 -26 6 1628 1105 106 87 32 chr6 136820544 136820729 -12696308 - B2_Mm2 SINE B2 0 195 1 6 1628 446 319 15 0 chr6 136822204 136822339 -12694698 + ID_B1 SINE B4 86 222 -2 6 1628 185 86 57 0 chr6 136825458 136825493 -12691544 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 6 1628 772 139 17 0 chr6 136825502 136825617 -12691420 - B1_Mur2 SINE Alu -1 148 32 6 1628 666 0 0 0 chr6 136825617 136825691 -12691346 + (TC)n Simple_repeat Simple_repeat 2 75 0 6 1628 213 39 0 0 chr6 136825691 136825716 -12691321 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1628 393 207 24 12 chr6 136825850 136825933 -12691104 - RSINE1 SINE B4 -80 85 2 6 1628 315 0 0 0 chr6 136826159 136826194 -12690843 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1628 1184 246 43 7 chr6 136826736 136827018 -12690019 - B4A SINE B4 0 292 1 6 1628 801 199 0 0 chr6 136827702 136827878 -12689159 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 6 1628 1107 61 111 41 chr6 136828720 136828892 -12688145 - B2_Mm2 SINE B2 -10 185 2 6 1628 1027 192 55 23 chr6 136828913 136829131 -12687906 - URR1B DNA MER1_type 0 225 1 6 1628 1468 179 8 225 chr6 136830706 136831301 -12685736 - RMER1B Other Other -293 773 246 6 1628 491 31 0 15 chr6 136832356 136832422 -12684615 + (TTTA)n Simple_repeat Simple_repeat 2 66 0 6 1628 451 222 44 25 chr6 136832422 136832529 -12684508 - PB1D10 SINE Alu -9 118 9 6 1628 2963 123 124 25 chr6 136832585 136833116 -12683921 - RLTR31A_Mm LTR ERVK 0 584 1 6 1628 467 304 6 70 chr6 136833282 136833379 -12683658 - ID_B1 SINE B4 -1 223 131 6 1628 1430 75 0 11 chr6 136833379 136833569 -12683468 - B2_Mm2 SINE B2 -6 189 2 6 1628 467 304 6 70 chr6 136833569 136833627 -12683410 - ID_B1 SINE B4 -94 130 78 6 1628 714 84 0 0 chr6 136833631 136833738 -12683299 + (TTTC)n Simple_repeat Simple_repeat 3 109 0 6 1628 1554 189 66 41 chr6 136833855 136834220 -12682817 - ORR1D1 LTR MaLR 0 374 1 6 1628 867 257 22 0 chr6 136834546 136834725 -12682312 - B3 SINE B2 -25 191 9 6 1628 1075 186 14 29 chr6 136834934 136835144 -12681893 - B3 SINE B2 -9 207 1 6 1628 236 296 155 0 chr6 136835158 136835229 -12681808 - PB1D10 SINE Alu -8 109 28 6 1628 283 267 0 118 chr6 136835621 136835636 -12681401 + MT2B2 LTR ERVL 155 157 -427 6 1628 560 207 0 1 chr6 136835636 136835748 -12681289 + B1F1 SINE Alu 3 113 -7 6 1628 196 174 10 42 chr6 136835770 136835866 -12681171 + (TA)n Simple_repeat Simple_repeat 1 93 0 6 1628 566 226 88 62 chr6 136835886 136836079 -12680958 + B3A SINE B2 1 198 0 6 1628 309 304 39 0 chr6 136837025 136837127 -12679910 + Lx8 LINE L1 7247 7352 -121 6 1628 260 290 65 0 chr6 136837391 136837453 -12679584 - PB1D9 SINE Alu -54 66 1 6 1628 459 174 0 0 chr6 136837476 136837562 -12679475 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 1628 266 333 0 0 chr6 136837663 136837744 -12679293 + ID4 SINE ID 2 82 -1 6 1628 342 159 0 0 chr6 136838838 136838907 -12678130 + (ATGGTG)n Simple_repeat Simple_repeat 6 74 0 6 1628 194 368 38 60 chr6 136838947 136839080 -12677957 - L2 LINE L2 -544 2875 2746 6 1629 1101 290 86 18 chr6 136839360 136839848 -12677189 + Lx9 LINE L1 7097 7617 -27 6 1629 248 53 0 26 chr6 136841207 136841246 -12675791 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 6 1629 1407 142 0 13 chr6 136841378 136841606 -12675431 + URR1B DNA MER1_type 1 225 0 6 1629 647 278 5 58 chr6 136842075 136842281 -12674756 - B3A SINE B2 -3 195 1 6 1629 2109 186 96 0 chr6 136842318 136842775 -12674262 - Lx9 LINE L1 -7 7637 7137 6 1629 186 71 0 0 chr6 136842789 136842817 -12674220 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1629 421 213 44 0 chr6 136842888 136843024 -12674013 + (TG)n Simple_repeat Simple_repeat 1 142 0 6 1629 1174 255 41 26 chr6 136844419 136844809 -12672228 + L1M2 LINE L1 4936 5331 -812 6 1629 270 306 88 94 chr6 136844832 136844991 -12672046 + RSINE1 SINE B4 8 165 0 6 1629 468 268 247 16 chr6 136845016 136845037 -12672000 + L1M2 LINE L1 5329 5352 -951 6 1629 1009 96 11 22 chr6 136845037 136845218 -12671819 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 1629 468 268 247 16 chr6 136845218 136845560 -12671477 + L1M2 LINE L1 5353 5776 -527 6 1629 192 174 42 42 chr6 136845663 136845711 -12671326 - L2 LINE L2 -2976 443 396 6 1629 826 164 20 7 chr6 136845977 136846124 -12670913 - B1_Mur4 SINE Alu 0 150 2 6 1629 1193 114 0 6 chr6 136848281 136848449 -12668588 + B2_Mm2 SINE B2 2 168 -27 6 1629 601 285 8 87 chr6 136848476 136848718 -12668319 - ID_B1 SINE B4 0 224 2 6 1629 456 343 134 20 chr6 136848836 136849083 -12667954 + LTR16A LTR ERVL 177 451 0 6 1629 1416 203 109 108 chr6 136849700 136849965 -12667072 + RLTR20A LTR ERVK 1 231 -347 6 1629 1460 65 16 5 chr6 136849965 136850151 -12666886 - B2_Mm2 SINE B2 -5 190 3 6 1629 1416 144 82 88 chr6 136850151 136850410 -12666627 + RLTR20A LTR ERVK 226 487 -54 6 1629 1368 241 65 68 chr6 136851132 136851631 -12665406 + MT2B LTR ERVL 1 601 0 6 1629 912 331 93 25 chr6 136851989 136852071 -12664966 + MER74A LTR ERVL 83 169 -389 7 1629 2100 163 97 36 chr6 136852071 136852547 -12664490 - RLTR16 LTR ERVK 0 505 1 7 1629 912 331 93 25 chr6 136852547 136852907 -12664130 + MER74A LTR ERVL 170 555 -3 7 1629 278 281 42 21 chr6 136853479 136853589 -12663448 + B1F2 SINE Alu 10 114 -3 7 1629 283 301 0 24 chr6 136854090 136854175 -12662862 + ID4 SINE ID 1 83 0 7 1629 1193 182 23 0 chr6 136854211 136854425 -12662612 + URR1A DNA MER1_type 2 220 -6 7 1629 381 291 50 101 chr6 136854374 136854433 -12662604 + B4A SINE B4 40 184 -108 7 1629 835 191 0 0 chr6 136854433 136854569 -12662468 + B1_Mur4 SINE Alu 15 150 0 7 1629 381 291 50 101 chr6 136854569 136854592 -12662445 + B4A SINE B4 185 246 -46 7 1629 228 343 9 57 chr6 136855489 136855594 -12661443 - RLTR9B2 LTR ERVK -69 351 252 7 1629 210 37 0 0 chr6 136855718 136855745 -12661292 + (TCCCG)n Simple_repeat Simple_repeat 5 31 0 7 1629 479 227 90 8 chr6 136856129 136856262 -12660775 - B1F1 SINE Alu 0 149 6 7 1629 496 296 0 107 chr6 136856864 136857004 -12660033 + ID_B1 SINE B4 79 203 -21 7 1629 729 0 0 0 chr6 136857005 136857086 -12659951 + (TC)n Simple_repeat Simple_repeat 2 82 0 7 1629 240 35 0 0 chr6 136857096 136857125 -12659912 + (CCTA)n Simple_repeat Simple_repeat 3 31 0 7 1629 859 185 22 50 chr6 136857254 136857436 -12659601 - URR1B DNA MER1_type 0 225 49 7 1629 595 290 59 21 chr6 136857440 136857627 -12659410 + B3A SINE B2 1 194 -4 7 1629 347 283 158 42 chr6 136857688 136857877 -12659160 + MIRc SINE MIR 17 232 -36 7 1629 435 173 0 0 chr6 136858142 136858223 -12658814 + GA-rich Low_complexity Low_complexity 3 83 0 7 1629 253 91 66 98 chr6 136858318 136858379 -12658658 + Lx8 LINE L1 7415 7473 0 7 1629 261 261 16 13 chr6 136858474 136858563 -12658474 + MLT1F1 LTR MaLR 404 498 -71 7 1629 919 257 158 40 chr6 136859337 136859665 -12657372 + MTEb LTR MaLR 5 371 -8 7 1629 192 40 0 0 chr6 136860173 136860198 -12656839 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 7 1629 241 284 39 39 chr6 136860780 136860857 -12656180 + ID4_ SINE ID 3 79 -4 7 1629 718 289 39 11 chr6 136860868 136861050 -12655987 + ID_B1 SINE B4 1 187 -37 7 1629 322 261 50 143 chr6 136861208 136861369 -12655668 + B4 SINE B4 78 223 -69 7 1629 731 229 7 7 chr6 136861230 136861371 -12655666 + B1F SINE Alu 9 149 0 7 1629 305 278 116 18 chr6 136861430 136861543 -12655494 + B3A SINE B2 80 201 -15 7 1629 299 224 0 15 chr6 136861604 136861672 -12655365 + G-rich Low_complexity Low_complexity 4 70 0 7 1629 582 133 0 26 chr6 136861672 136861788 -12655249 + GA-rich Low_complexity Low_complexity 1 113 0 7 1629 417 127 0 0 chr6 136861811 136861890 -12655147 + (CA)n Simple_repeat Simple_repeat 2 80 0 7 1629 182 118 0 29 chr6 136862103 136862138 -12654899 + (CCCG)n Simple_repeat Simple_repeat 3 36 0 7 1629 387 331 13 57 chr6 136862762 136862919 -12654118 - ID_B1 SINE B4 -5 219 70 7 1629 315 71 0 0 chr6 136863009 136863051 -12653986 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1629 445 216 112 0 chr6 136863098 136863232 -12653805 - B1F SINE Alu 0 149 1 7 1629 434 244 207 46 chr6 136863703 136863890 -12653147 - MTD LTR MaLR -14 405 199 7 1629 289 288 37 31 chr6 136863835 136863958 -12653079 + MTD LTR MaLR 236 365 -56 7 1629 2578 226 226 48 chr6 136863979 136865047 -12651990 + MTD-int LTR MaLR 1 1258 0 7 1629 1626 222 98 8 chr6 136865049 136865425 -12651612 + MTD LTR MaLR 3 412 -7 7 1629 709 271 5 42 chr6 136865741 136865930 -12651107 + B3A SINE B2 1 182 -16 7 1629 447 73 0 0 chr6 136866196 136866264 -12650773 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1629 254 241 0 0 chr6 136866777 136866831 -12650206 - PB1D10 SINE Alu -42 75 22 7 1629 659 250 68 24 chr6 136866899 136867104 -12649933 - B3 SINE B2 0 216 3 7 1629 183 361 33 38 chr6 136867481 136867691 -12649346 + L2c LINE L2 3170 3378 -9 7 1629 706 235 119 11 chr6 136867730 136867915 -12649122 + ID_B1 SINE B4 1 205 -19 7 1629 200 163 0 23 chr6 136867919 136867963 -12649074 + (TA)n Simple_repeat Simple_repeat 2 44 0 7 1629 456 19 0 0 chr6 136868013 136868066 -12648971 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1629 429 275 76 8 chr6 136869728 136869860 -12647177 + B1F SINE Alu 3 143 -6 7 1629 23 0 0 0 chr6 136870844 136870867 -12646170 + AT_rich Low_complexity Low_complexity 1 23 0 7 1629 1242 54 0 0 chr6 136870977 136871125 -12645912 - B1_Mus1 SINE Alu 0 148 1 7 1629 1484 245 34 63 chr6 136871343 136871726 -12645311 - MTE2b LTR MaLR -7 372 1 7 1629 180 0 0 0 chr6 136872510 136872530 -12644507 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1629 231 188 0 0 chr6 136872972 136873020 -12644017 + CT-rich Low_complexity Low_complexity 3 50 0 7 1629 227 304 106 97 chr6 136873027 136873140 -12643897 + PB1D10 SINE Alu 1 114 -3 7 1629 249 108 0 0 chr6 136874160 136874197 -12642840 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 7 1629 1254 47 0 0 chr6 136874198 136874346 -12642691 - B1_Mus1 SINE Alu 0 148 1 7 1629 240 35 0 0 chr6 136874557 136874586 -12642451 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1629 744 277 77 66 chr6 136874592 136874866 -12642171 - B4 SINE B4 -9 283 7 7 1629 261 0 0 0 chr6 136876478 136876507 -12640530 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1629 230 73 0 24 chr6 136877676 136877718 -12639319 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1629 252 59 0 0 chr6 136878325 136878359 -12638678 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1629 184 206 31 31 chr6 136879029 136879094 -12637943 + (TATG)n Simple_repeat Simple_repeat 2 66 0 7 1629 326 309 95 95 chr6 136880105 136880186 -12636851 + B4 SINE B4 6 92 -200 7 1629 300 53 0 0 chr6 136880186 136880224 -12636813 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7 1629 326 309 95 95 chr6 136880224 136880353 -12636684 + B4 SINE B4 93 216 -76 7 1629 507 271 15 15 chr6 136880311 136880446 -12636591 + MTD LTR MaLR 83 217 -202 7 1629 390 288 0 0 chr6 136880940 136881100 -12635937 + (TG)n Simple_repeat Simple_repeat 2 161 0 7 1629 1906 200 19 5 chr6 136881244 136881611 -12635426 + MTD LTR MaLR 1 372 -47 7 1629 546 16 0 0 chr6 136881697 136881760 -12635277 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1629 207 125 0 0 chr6 136881762 136881802 -12635235 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 1629 603 248 47 7 chr6 136883051 136883201 -12633836 - RMER30 DNA MER1_type -42 160 5 7 1629 407 210 10 0 chr6 136884441 136884541 -12632496 + GA-rich Low_complexity Low_complexity 1 101 0 7 1629 24 0 0 0 chr6 136884638 136884662 -12632375 + AT_rich Low_complexity Low_complexity 1 24 0 7 1629 768 237 103 5 chr6 136885121 136885316 -12631721 + B3 SINE B2 3 216 0 7 1629 536 307 73 59 chr6 136885991 136886362 -12630675 + RMER17C LTR ERVK 1 376 -34 7 1629 213 326 32 21 chr6 136886738 136886832 -12630205 + MIRb SINE MIR 24 118 -150 7 1629 1149 7 40 7 chr6 136887754 136887905 -12629132 + (TCTCCC)n Simple_repeat Simple_repeat 1 156 0 7 1629 497 176 67 19 chr6 136887934 136888038 -12628999 - PB1D9 SINE Alu -7 113 5 7 1629 450 0 0 0 chr6 136890258 136890308 -12626729 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1629 195 129 0 0 chr6 136890834 136890865 -12626172 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 7 1629 226 270 133 18 chr6 136890903 136891016 -12626021 + MamRep434 DNA TcMar 7 132 -294 7 1629 768 279 51 43 chr6 136891258 136891545 -12625492 + RLTR11A2 LTR ERVK 2 279 -162 7 1629 324 292 6 89 chr6 136891668 136891826 -12625211 + RLTR11A2 LTR ERVK 284 428 -25 7 1629 1170 154 221 8 chr6 136891991 136892240 -12624797 + MTC LTR MaLR 1 302 -119 7 1629 3498 82 42 0 chr6 136892209 136892683 -12624354 + MT2B LTR ERVL 108 601 0 7 1629 450 70 0 0 chr6 136892686 136892743 -12624294 + MTC LTR MaLR 365 421 0 7 1629 218 200 73 136 chr6 136892744 136892854 -12624183 + PB1D10 SINE Alu 14 116 -1 7 1629 2731 206 83 16 chr6 136892999 136893665 -12623372 + Lx9 LINE L1 6780 7489 -155 7 1629 384 307 87 40 chr6 136893711 136893884 -12623153 + MLT1F2 LTR MaLR 380 560 0 7 1629 329 326 88 0 chr6 136894126 136894273 -12622764 + RSINE1 SINE B4 4 163 -2 7 1629 807 178 0 0 chr6 136894277 136894451 -12622586 + (CA)n Simple_repeat Simple_repeat 1 174 0 7 1629 656 183 0 32 chr6 136894489 136894675 -12622362 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1629 999 187 10 124 chr6 136895239 136895378 -12621659 - RMER17C LTR ERVK -156 254 181 7 1629 708 45 0 0 chr6 136895378 136895466 -12621571 + (GAGAA)n Simple_repeat Simple_repeat 5 92 0 7 1629 999 140 11 81 chr6 136895466 136895661 -12621376 - RMER17C LTR ERVK -230 180 2 7 1629 203 179 0 0 chr6 136895661 136895700 -12621337 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1629 944 274 110 44 chr6 136895729 136896164 -12620873 - L1MDa LINE L1 -556 6194 5731 7 1629 1270 267 66 16 chr6 136896197 136896562 -12620475 - Lx8 LINE L1 -518 6955 6573 7 1629 860 304 23 33 chr6 136896948 136897254 -12619783 - Lx8 LINE L1 -883 6590 6288 7 1629 333 271 167 31 chr6 136897300 136897403 -12619634 - L1MDa LINE L1 -2222 4315 4186 7 1629 1261 156 202 17 chr6 136897403 136897749 -12619288 - RMER17C LTR ERVK 0 410 1 7 1629 333 271 167 31 chr6 136897749 136897938 -12619099 - L1MDa LINE L1 -2352 4185 3984 7 1629 613 186 93 19 chr6 136898936 136899098 -12617939 + RMER19B LTR ERVK 1 149 -753 7 1629 451 327 114 42 chr6 136899146 136899796 -12617241 - L1MDa LINE L1 -4667 1966 1270 7 1629 403 346 80 18 chr6 136899973 136900247 -12616790 - L1MDa LINE L1 -6246 387 97 7 1629 1208 69 107 11 chr6 136900293 136900470 -12616567 - B2_Mm2 SINE B2 -1 194 1 7 1629 21 36 0 0 chr6 136900472 136900500 -12616537 + AT_rich Low_complexity Low_complexity 1 28 0 7 1629 243 275 32 42 chr6 136900705 136900800 -12616237 - MIR SINE MIR -56 152 59 7 1629 2414 114 14 34 chr6 136900897 136901315 -12615722 - RMER17C LTR ERVK 0 410 1 7 1629 594 299 81 33 chr6 136901390 136901663 -12615374 - B4A SINE B4 -2 290 5 7 1629 348 24 0 0 chr6 136902670 136902711 -12614326 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1629 648 0 0 0 chr6 136902711 136902782 -12614255 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 1629 687 25 0 0 chr6 136904417 136904498 -12612539 + (TC)n Simple_repeat Simple_repeat 2 82 0 7 1629 384 125 0 0 chr6 136904498 136904561 -12612476 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1629 481 221 159 8 chr6 136904576 136904708 -12612329 - B3A SINE B2 -45 153 2 8 1629 197 312 77 43 chr6 136905180 136905297 -12611740 - MIRb SINE MIR -130 138 18 8 1629 37 52 0 0 chr6 136905416 136905474 -12611563 + AT_rich Low_complexity Low_complexity 1 58 0 8 1629 243 125 0 0 chr6 136905591 136905631 -12611406 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 8 1629 630 0 0 0 chr6 136906140 136906210 -12610827 + (GA)n Simple_repeat Simple_repeat 1 70 0 8 1629 1016 182 29 5 chr6 136906530 136906734 -12610303 - B3 SINE B2 -5 211 3 8 1629 855 254 28 14 chr6 136907307 136907523 -12609514 - ID_B1 SINE B4 -4 220 2 8 1629 751 265 4 33 chr6 136908159 136908358 -12608679 - B3A SINE B2 -1 215 15 8 1629 200 206 48 0 chr6 136908455 136908518 -12608519 + T-rich Low_complexity Low_complexity 3 68 0 8 1629 366 321 23 70 chr6 136908854 136909025 -12608012 + RSINE1 SINE B4 3 165 0 8 1629 408 232 0 0 chr6 136909029 136909257 -12607780 + (CA)n Simple_repeat Simple_repeat 1 228 0 8 1629 384 235 58 117 chr6 136909301 136909455 -12607582 + ID_B1 SINE B4 18 162 -62 8 1629 212 216 39 0 chr6 136909993 136910044 -12606993 - MIR3 SINE MIR -38 170 118 8 1629 1048 89 0 0 chr6 136910535 136910670 -12606367 + B1_Mus1 SINE Alu 2 136 -12 8 1629 221 0 35 0 chr6 136910670 136910699 -12606338 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 8 1629 995 296 129 40 chr6 136910699 136911183 -12605854 - L1MC2 LINE L1 -11 6333 5806 8 1629 962 235 49 0 chr6 136911183 136911387 -12605650 - B3 SINE B2 0 216 3 8 1629 995 296 129 40 chr6 136911387 136911508 -12605529 - L1MC2 LINE L1 -539 5805 5674 8 1629 252 122 0 0 chr6 136911509 136911550 -12605487 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1629 301 174 97 42 chr6 136912143 136912215 -12604822 + B1_Mur1 SINE Alu 74 149 0 8 1629 203 88 29 0 chr6 136912576 136912610 -12604427 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1629 1164 89 0 0 chr6 136912612 136912758 -12604279 - B1_Mus2 SINE Alu 0 147 2 8 1629 297 339 62 124 chr6 136914035 136914348 -12602689 - MTEa LTR MaLR 0 379 1 8 1629 308 244 121 11 chr6 136914348 136914439 -12602598 - MLT2B3 LTR ERVL -453 101 1 8 1629 1230 177 27 14 chr6 136914683 136914906 -12602131 - MTC LTR MaLR 0 421 196 8 1629 311 250 10 0 chr6 136914907 136915007 -12602030 + CT-rich Low_complexity Low_complexity 4 104 0 8 1629 741 154 16 0 chr6 136915037 136915160 -12601877 - B1_Mur3 SINE Alu -8 141 17 8 1629 1206 130 35 5 chr6 136915154 136915355 -12601682 - MTC LTR MaLR -214 207 1 8 1629 189 250 18 55 chr6 136915376 136915431 -12601606 - MIRm SINE MIR -92 184 132 8 1629 743 231 19 6 chr6 136915553 136915714 -12601323 + B3A SINE B2 1 163 -35 8 1629 1098 103 0 0 chr6 136916255 136916574 -12600463 + (TG)n Simple_repeat Simple_repeat 1 319 0 8 1629 374 92 330 18 chr6 136916584 136916693 -12600344 - B2_Mm2 SINE B2 -6 189 47 8 1629 1159 116 35 0 chr6 136916743 136916916 -12600121 - B2_Mm1t SINE B2 -14 179 1 8 1629 426 229 6 0 chr6 136917119 136917208 -12599829 - B1F SINE Alu -26 123 31 8 1629 202 333 116 33 chr6 136917280 136917401 -12599636 + MIR3 SINE MIR 26 156 -52 8 1629 4268 19 0 0 chr6 136917671 136918150 -12598887 + L1Md_A LINE L1 6103 6581 -1 8 1629 502 168 30 0 chr6 136918260 136918361 -12598676 - RLTR21 LTR ERVK -1101 471 368 8 1629 249 57 0 0 chr6 136918383 136918418 -12598619 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1629 434 266 122 66 chr6 136918815 136918850 -12598187 - B3A SINE B2 -1 197 172 8 1629 639 0 0 0 chr6 136918850 136918921 -12598116 + (TC)n Simple_repeat Simple_repeat 2 72 0 8 1629 434 266 122 66 chr6 136918921 136919066 -12597971 - B3A SINE B2 -27 171 7 8 1629 394 251 34 209 chr6 136919063 136919169 -12597868 + MTE2a LTR MaLR 139 225 -154 8 1629 1133 56 0 43 chr6 136919169 136919356 -12597681 + (GTGTG)n Simple_repeat Simple_repeat 1 179 0 8 1629 539 251 34 209 chr6 136919356 136919541 -12597496 + MTE2a LTR MaLR 220 379 0 8 1629 378 143 0 0 chr6 136919548 136919611 -12597426 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1629 38850 43 0 3 chr6 136919889 136926207 -12590830 - L1Md_T LINE L1 0 6585 188 8 1629 1559 16 0 71 chr6 136926353 136926551 -12590486 + B2_Mm1a SINE B2 2 185 -8 8 1629 474 65 0 0 chr6 136926823 136926885 -12590152 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 1629 184 353 58 23 chr6 136927201 136927288 -12589749 - L2c LINE L2 -40 3347 3258 8 1629 799 188 56 0 chr6 136927428 136927572 -12589465 + B2_Mm2 SINE B2 1 152 -43 8 1629 836 278 42 93 chr6 136927785 136928118 -12588919 - ORR1E LTR MaLR -5 354 39 8 1629 318 26 0 0 chr6 136928727 136928766 -12588271 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1629 828 203 9 0 chr6 136929263 136929496 -12587541 + CT-rich Low_complexity Low_complexity 1 235 0 8 1629 984 272 91 55 chr6 136929808 136930505 -12586532 + L1MA8 LINE L1 5535 6216 -75 8 1629 335 73 18 0 chr6 136930505 136930560 -12586477 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1629 491 214 71 0 chr6 136930593 136930705 -12586332 + PB1D7 SINE Alu 1 120 0 8 1629 484 77 26 0 chr6 136930748 136930826 -12586211 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 8 1629 920 287 41 94 chr6 136931704 136932046 -12584991 - ORR1E LTR MaLR 0 359 36 8 1629 342 103 17 0 chr6 136933047 136933105 -12583932 - RMER1A Other Other -6 1024 966 8 1629 977 220 24 5 chr6 136933180 136933390 -12583647 - B3 SINE B2 0 216 3 8 1629 188 152 43 0 chr6 136933390 136933436 -12583601 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 8 1629 361 254 171 70 chr6 136934036 136934235 -12582802 - RMER13A LTR ERVK -612 248 30 8 1629 183 238 45 60 chr6 136934361 136934428 -12582609 + L3 LINE CR1 2724 2789 -1700 8 1629 1014 129 7 0 chr6 136935141 136935288 -12581749 - B1_Mur3 SINE Alu -1 148 1 8 1629 1620 112 138 21 chr6 136935437 136935964 -12581073 + RLTR44D LTR ERVK 1 487 -15 8 1629 423 272 74 13 chr6 136936663 136936812 -12580225 + MER5A DNA MER1_type 2 159 -30 8 1629 1226 88 29 6 chr6 136937533 136937704 -12579333 - B2_Mm2 SINE B2 -19 176 2 8 1629 1095 28 0 67 chr6 136937806 136937999 -12579038 + (TC)n Simple_repeat Simple_repeat 1 180 0 8 1629 1150 50 7 7 chr6 136938005 136938147 -12578890 - B1_Mus1 SINE Alu -6 142 1 8 1629 216 378 0 0 chr6 136938264 136938346 -12578691 - MIR SINE MIR -1 261 180 8 1629 21 0 0 0 chr6 136939477 136939498 -12577539 + AT_rich Low_complexity Low_complexity 1 21 0 8 1629 218 368 45 70 chr6 136939704 136939903 -12577134 - MIRb SINE MIR -28 240 47 8 1629 268 228 11 102 chr6 136940404 136940427 -12576610 - ID_B1 SINE B4 -43 181 102 8 1629 294 266 0 15 chr6 136940427 136940492 -12576545 - PB1D10 SINE Alu -33 84 21 8 1629 1405 55 0 48 chr6 136940617 136940806 -12576231 + B2_Mm2 SINE B2 2 181 -14 8 1629 294 305 159 44 chr6 136941169 136941351 -12575686 - MLT1C LTR MaLR 0 467 265 8 1629 2401 98 3 0 chr6 136941427 136941753 -12575284 - ORR1A2 LTR MaLR 0 327 1 8 1629 653 318 54 13 chr6 136941806 136942045 -12574992 + B4 SINE B4 35 283 -9 8 1629 189 0 0 0 chr6 136942089 136942110 -12574927 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 8 1629 283 242 38 95 chr6 136942111 136942216 -12574821 - MLT1C LTR MaLR -308 159 61 8 1629 342 338 0 75 chr6 136943449 136943596 -12573441 - B1F1 SINE Alu 0 149 14 8 1629 1179 273 85 23 chr6 136943599 136943951 -12573086 + MTEb LTR MaLR 6 379 0 8 1629 327 235 0 0 chr6 136944366 136944464 -12572573 + CT-rich Low_complexity Low_complexity 2 99 0 8 1629 483 248 35 0 chr6 136944465 136944578 -12572459 - B1F SINE Alu -7 142 26 8 1629 234 0 0 0 chr6 136944868 136944894 -12572143 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1629 403 318 37 67 chr6 136945618 136945888 -12571149 - L1M2 LINE L1 -861 5282 5021 8 1629 498 285 84 98 chr6 136945920 136946216 -12570821 - B4A SINE B4 0 292 1 8 1629 224 107 70 18 chr6 136946326 136946383 -12570654 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 1629 374 299 109 16 chr6 136946391 136946637 -12570400 + L1MA4 LINE L1 5729 5996 -172 8 1629 402 278 10 0 chr6 136947288 136947385 -12569652 - B3A SINE B2 -1 197 100 8 1629 444 291 100 66 chr6 136948166 136948486 -12568551 - ORR1E LTR MaLR -21 338 8 8 1629 202 68 22 43 chr6 136948488 136948534 -12568503 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 8 1629 1235 48 0 0 chr6 136948534 136948681 -12568356 - B1_Mm SINE Alu 0 147 1 8 1629 1089 67 0 0 chr6 136948841 136948975 -12568062 + B1_Mm SINE Alu 2 135 -12 8 1629 1113 8 0 0 chr6 136948978 136949104 -12567933 + (GA)n Simple_repeat Simple_repeat 2 127 0 8 1629 446 120 13 0 chr6 136949797 136949872 -12567165 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 8 1629 1539 198 69 8 chr6 136950373 136950750 -12566287 - RMER10A LTR ERVL -42 400 1 8 1629 383 259 0 44 chr6 136950893 136951006 -12566031 + ID_B1 SINE B4 117 224 0 8 1629 270 0 0 221 chr6 136951265 136951419 -12565618 + (CTGTG)n Simple_repeat Simple_repeat 1 120 0 8 1629 509 236 0 27 chr6 136951425 136951639 -12565398 + (TG)n Simple_repeat Simple_repeat 1 208 0 8 1629 448 262 0 22 chr6 136951660 136951898 -12565139 + (TG)n Simple_repeat Simple_repeat 1 232 0 8 1629 975 267 127 12 chr6 136952086 136952416 -12564621 - ORR1D2 LTR MaLR -2 368 1 8 1629 345 24 0 0 chr6 136953145 136953187 -12563850 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1629 347 208 194 19 chr6 136953202 136953310 -12563727 + MLT2B5 LTR ERVL 122 248 -353 8 1629 325 241 0 25 chr6 136953303 136953384 -12563653 - B3 SINE B2 -75 141 63 8 1629 237 278 66 50 chr6 136953655 136953776 -12563261 + L1MC LINE L1 5614 5736 -2146 9 1629 507 224 29 82 chr6 136954049 136954219 -12562818 + B3A SINE B2 1 161 -37 9 1629 272 252 47 37 chr6 136954253 136954360 -12562677 + B3 SINE B2 109 216 0 9 1629 534 262 75 7 chr6 136954748 136954894 -12562143 + RSINE1 SINE B4 10 165 0 9 1629 1094 267 20 7 chr6 136955094 136955388 -12561649 + RMER1B Other Other 65 362 -704 9 1629 3137 189 87 161 chr6 136955398 136956139 -12560898 + RMER1B Other Other 151 773 -293 9 1629 1696 161 80 26 chr6 136956139 136956334 -12560703 + RMER17C LTR ERVK 1 187 -223 9 1629 419 0 0 19 chr6 136956334 136956386 -12560651 + (TC)n Simple_repeat Simple_repeat 2 52 0 9 1629 1696 161 80 26 chr6 136956386 136956579 -12560458 + RMER17C LTR ERVK 188 409 -1 9 1629 3137 189 87 161 chr6 136956579 136956718 -12560319 + RMER1B Other Other 774 918 -148 9 1629 234 0 0 0 chr6 136956718 136956744 -12560293 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 9 1629 3137 189 87 161 chr6 136956744 136956847 -12560190 + RMER1B Other Other 919 1061 -5 9 1629 894 164 0 0 chr6 136957621 136957786 -12559251 + (TG)n Simple_repeat Simple_repeat 1 165 0 9 1629 604 233 11 74 chr6 136957790 136957966 -12559071 - RSINE1 SINE B4 0 165 1 9 1629 446 143 0 9 chr6 136958364 136958470 -12558567 + CT-rich Low_complexity Low_complexity 2 106 0 9 1629 401 276 134 0 chr6 136958904 136959031 -12558006 + B4A SINE B4 3 146 -146 9 1629 204 40 0 0 chr6 136959152 136959177 -12557860 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1629 2308 46 7 0 chr6 136959217 136959498 -12557539 - L1Md_T LINE L1 0 6582 6300 9 1629 627 93 28 9 chr6 136959638 136959747 -12557290 + (CCCCCT)n Simple_repeat Simple_repeat 6 116 0 9 1629 233 360 63 28 chr6 136961429 136961572 -12555465 - RSINE1 SINE B4 -13 152 5 9 1629 726 231 107 0 chr6 136963513 136963682 -12553355 + B3 SINE B2 2 188 -28 9 1629 306 0 0 0 chr6 136963682 136963716 -12553321 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1629 189 185 30 15 chr6 136963734 136963800 -12553237 + CT-rich Low_complexity Low_complexity 3 69 0 9 1629 1046 150 42 31 chr6 136963894 136964087 -12552950 + B2_Mm2 SINE B2 1 195 0 9 1629 234 299 53 20 chr6 136964228 136964378 -12552659 + (CATATA)n Simple_repeat Simple_repeat 4 158 0 9 1629 249 135 0 0 chr6 136964378 136964430 -12552607 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1629 343 261 25 38 chr6 136964473 136964632 -12552405 + (CATATA)n Simple_repeat Simple_repeat 5 161 0 9 1629 414 0 0 0 chr6 136964639 136964685 -12552352 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1629 792 233 13 95 chr6 136964994 136965226 -12551811 + B3 SINE B2 4 216 0 9 1629 612 0 0 0 chr6 136965312 136965380 -12551657 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 9 1629 202 188 0 0 chr6 136965383 136965415 -12551622 + C-rich Low_complexity Low_complexity 1 32 0 9 1629 462 233 0 0 chr6 136966409 136966589 -12550448 + (TATG)n Simple_repeat Simple_repeat 1 180 0 9 1629 237 169 104 78 chr6 136967400 136967477 -12549560 + B1_Mus1 SINE Alu 7 85 -63 9 1629 237 135 0 0 chr6 136967479 136967531 -12549506 + (T)n Simple_repeat Simple_repeat 1 52 0 9 1629 1273 41 0 0 chr6 136967534 136967681 -12549356 - B1_Mm SINE Alu 0 147 1 9 1629 665 312 61 11 chr6 136968642 136969028 -12548009 - L1MA4 LINE L1 -372 5928 5524 9 203 329 304 103 77 chr6 136970012 136970429 -12546608 - L1ME2 LINE L1 -96 6068 5641 9 1630 648 0 0 0 chr6 136970809 136970881 -12546156 + (TC)n Simple_repeat Simple_repeat 1 72 0 9 1630 574 259 36 46 chr6 136970881 136971070 -12545967 + Lx8 LINE L1 6288 6475 -998 9 1630 3490 96 32 2 chr6 136971108 136971607 -12545430 - L1_Mus3 LINE L1 0 6638 6125 9 1630 228 317 41 23 chr6 136972385 136972556 -12544481 - L1M5 LINE L1 -3863 2283 2110 9 1630 364 190 597 0 chr6 136972631 136972750 -12544287 - URR1B DNA MER1_type -30 195 6 9 1630 508 191 27 0 chr6 136972894 136973004 -12544033 + B1_Mus2 SINE Alu 35 147 0 9 1630 398 283 11 0 chr6 136973119 136973211 -12543826 + B1F1 SINE Alu 10 102 -47 9 1630 227 342 79 55 chr6 136973477 136973604 -12543433 + MLT-int LTR MaLR 951 1080 -655 9 1630 955 102 13 13 chr6 136973638 136973797 -12543240 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 9 1630 445 90 25 25 chr6 136973798 136973878 -12543159 + (GGGA)n Simple_repeat Simple_repeat 2 81 0 9 1630 994 287 105 8 chr6 136973878 136974361 -12542676 + MLT-int LTR MaLR 851 1735 0 9 1630 585 158 0 0 chr6 136974571 136974691 -12542346 + CT-rich Low_complexity Low_complexity 2 121 0 9 1630 181 218 26 0 chr6 136974743 136974821 -12542216 + CT-rich Low_complexity Low_complexity 1 80 0 9 1630 183 26 75 25 chr6 136975018 136975058 -12541979 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 9 1630 1959 160 87 14 chr6 136975087 136975454 -12541583 - ORR1B1 LTR MaLR 0 394 1 9 1630 194 233 17 0 chr6 136975686 136975746 -12541291 + CT-rich Low_complexity Low_complexity 4 64 0 9 1630 588 29 0 0 chr6 136976432 136976502 -12540535 + (TCTCCC)n Simple_repeat Simple_repeat 4 73 0 9 1630 584 260 51 34 chr6 136976505 136976680 -12540357 - B3A SINE B2 -16 182 5 9 1630 465 289 6 50 chr6 136976753 136976913 -12540124 - MLT1A0 LTR MaLR -8 357 205 9 1630 38 22 0 0 chr6 136976921 136976966 -12540071 + AT_rich Low_complexity Low_complexity 1 45 0 9 1630 6447 141 55 5 chr6 136976966 136977312 -12539725 + L1_Mur3 LINE L1 3895 4266 -1614 9 1630 204 40 0 0 chr6 136977312 136977337 -12539700 + (CAA)n Simple_repeat Simple_repeat 3 27 0 9 1630 6447 141 55 5 chr6 136977337 136978089 -12538948 + L1_Mur3 LINE L1 4267 5047 -833 9 1630 306 337 0 0 chr6 136978122 136978214 -12538823 + CT-rich Low_complexity Low_complexity 1 92 0 9 1630 699 12 0 0 chr6 136980009 136980089 -12536948 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 9 1630 729 290 77 27 chr6 136980209 136980468 -12536569 + B4 SINE B4 14 285 -7 9 1630 212 304 0 0 chr6 136980478 136980534 -12536503 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1630 957 231 19 0 chr6 136980846 136981058 -12535979 + B3 SINE B2 1 216 0 9 1630 827 254 60 44 chr6 136981218 136981535 -12535502 - MTEa LTR MaLR -47 332 11 9 1630 602 294 53 24 chr6 136982110 136982316 -12534721 - Lx6 LINE L1 -26 7434 7223 9 1630 546 286 57 19 chr6 136982720 136982877 -12534160 - B3A SINE B2 -34 164 2 9 1630 800 200 199 5 chr6 136983344 136983530 -12533507 + URR1B DNA MER1_type 1 222 -3 9 1630 483 148 79 53 chr6 136983690 136983719 -12533318 + ORR1D1 LTR MaLR 3 27 -347 9 1630 5046 128 56 60 chr6 136983719 136984056 -12532981 - RLTR13D6 LTR ERVK 0 902 563 9 1630 1131 75 0 20 chr6 136984056 136984205 -12532832 - B1_Mus1 SINE Alu 0 148 3 9 1630 5046 128 56 60 chr6 136984205 136984772 -12532265 - RLTR13D6 LTR ERVK -340 562 1 9 1630 483 158 148 72 chr6 136984772 136984908 -12532129 + ORR1D1 LTR MaLR 28 194 -190 9 1630 512 97 11 0 chr6 136984908 136985001 -12532036 + (TC)n Simple_repeat Simple_repeat 2 95 0 9 1630 886 227 19 14 chr6 136985010 136985220 -12531817 + ORR1D1 LTR MaLR 164 374 0 9 1630 572 301 58 16 chr6 136985220 136985409 -12531628 - B4A SINE B4 -89 203 7 9 1630 2189 98 3 0 chr6 136985963 136986281 -12530756 - ORR1A2 LTR MaLR -8 319 1 9 1630 1658 36 0 0 chr6 136986996 136987188 -12529849 + B2_Mm1a SINE B2 1 192 -1 9 1630 1723 241 41 19 chr6 136987585 136988004 -12529033 - Lx6 LINE L1 -3 7457 7030 9 1630 309 153 0 0 chr6 136988026 136988098 -12528939 + (TA)n Simple_repeat Simple_repeat 1 72 0 9 1630 249 57 0 0 chr6 136988112 136988147 -12528890 + (GA)n Simple_repeat Simple_repeat 1 35 0 9 1630 390 226 12 0 chr6 136988164 136988248 -12528789 - Lx8 LINE L1 -511 6962 6878 9 1630 190 269 39 0 chr6 136988998 136989050 -12527987 + MIRc SINE MIR 66 119 -149 9 1630 288 0 0 0 chr6 136989056 136989088 -12527949 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9 1630 1781 134 44 25 chr6 136990125 136990392 -12526645 - ORR1A2 LTR MaLR 0 327 52 9 1630 2417 131 88 12 chr6 136990392 136990801 -12526236 + BGLII_B LTR ERVK 2 441 0 9 1630 1781 134 44 25 chr6 136990801 136990854 -12526183 - ORR1A2 LTR MaLR -276 51 1 9 1630 22 0 0 0 chr6 136990865 136990887 -12526150 + AT_rich Low_complexity Low_complexity 1 22 0 9 1630 825 268 24 28 chr6 136990934 136991187 -12525850 - B4A SINE B4 0 292 41 9 1630 1056 68 0 52 chr6 136991381 136991536 -12525501 + B1_Mus1 SINE Alu 2 148 0 9 1630 43 20 0 0 chr6 136991642 136991692 -12525345 + AT_rich Low_complexity Low_complexity 1 50 0 9 1630 430 188 67 74 chr6 136992283 136992432 -12524605 + B1F SINE Alu 1 148 -1 9 1630 651 220 46 139 chr6 136992690 136992906 -12524131 + B3A SINE B2 3 198 0 9 1630 370 310 181 0 chr6 136993230 136993401 -12523636 - B3 SINE B2 -10 206 5 9 1630 306 332 108 46 chr6 136994118 136994358 -12522679 - MLT1B LTR MaLR -3 387 133 9 1630 3694 81 13 6 chr6 136994358 136994905 -12522132 + RMER17B LTR ERVK 1 551 -407 9 1630 23 33 0 0 chr6 136995400 136995430 -12521607 + AT_rich Low_complexity Low_complexity 1 30 0 9 1630 22 35 0 0 chr6 136996059 136996088 -12520949 + AT_rich Low_complexity Low_complexity 1 29 0 9 1630 432 293 83 0 chr6 136996129 136996262 -12520775 - B3 SINE B2 -26 190 47 9 1630 458 294 39 8 chr6 136996606 136996733 -12520304 - B3A SINE B2 -62 136 6 9 1630 336 323 36 66 chr6 136996762 136996928 -12520109 + B4A SINE B4 1 161 -131 9 1630 440 262 0 0 chr6 136996924 136997031 -12520006 - B1_Mur1 SINE Alu -16 133 27 9 1630 234 0 0 0 chr6 136997185 136997211 -12519826 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 9 1630 269 305 38 0 chr6 136997496 136997601 -12519436 - MamRep1161 DNA TcMar -838 119 11 9 1630 493 321 29 48 chr6 136997851 136997959 -12519078 + B4A SINE B4 2 105 -187 9 1630 1568 212 18 50 chr6 136997959 136998356 -12518681 - ORR1C2 LTR MaLR 0 384 1 9 1630 493 321 29 48 chr6 136998356 136998453 -12518584 + B4A SINE B4 106 203 -89 9 1630 2176 82 9 0 chr6 136998457 136998773 -12518264 - ORR1A2 LTR MaLR -8 319 1 9 1630 267 287 11 33 chr6 136998773 136998861 -12518176 + B4A SINE B4 199 284 -8 9 1630 542 54 14 0 chr6 136998879 136998953 -12518084 + (CA)n Simple_repeat Simple_repeat 2 76 0 9 1630 341 287 42 71 chr6 136999206 136999435 -12517602 + MTE2a LTR MaLR 1 211 -208 1 1630 934 231 59 45 chr6 136999439 136999852 -12517185 - RMER1B Other Other -653 413 45 1 1630 313 285 35 35 chr6 137000025 137000196 -12516841 - L1MEc LINE L1 -4885 1515 1345 1 1630 1034 121 0 13 chr6 137000273 137000424 -12516613 - B1_Mur4 SINE Alu -1 149 1 2 1630 819 167 182 11 chr6 137000451 137000627 -12516410 - B3 SINE B2 -8 208 3 3 1630 308 309 65 95 chr6 137001357 137001525 -12515512 + MTEa LTR MaLR 6 168 -211 4 1630 21 0 0 0 chr6 137001871 137001892 -12515145 + AT_rich Low_complexity Low_complexity 1 21 0 5 1630 672 237 55 5 chr6 137002105 137002304 -12514733 - B3 SINE B2 0 216 8 6 1630 23 0 0 0 chr6 137003352 137003375 -12513662 + AT_rich Low_complexity Low_complexity 1 23 0 7 1630 285 235 81 23 chr6 137005500 137005587 -12511450 + PB1D10 SINE Alu 2 93 -24 8 1630 612 156 8 15 chr6 137005668 137005798 -12511239 + GA-rich Low_complexity Low_complexity 5 133 0 9 1630 369 0 0 0 chr6 137006128 137006169 -12510868 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1630 954 90 0 0 chr6 137008643 137008777 -12508260 + (TTCC)n Simple_repeat Simple_repeat 1 134 0 1 1630 225 0 0 0 chr6 137009434 137009459 -12507578 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1630 306 213 27 0 chr6 137009792 137009867 -12507170 + B1_Mur4 SINE Alu 74 150 0 1 1630 241 312 73 31 chr6 137010113 137010209 -12506828 + B3A SINE B2 1 100 -98 1 1630 216 143 0 0 chr6 137010958 137011000 -12506037 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1630 589 258 159 0 chr6 137011459 137011767 -12505270 + MTD LTR MaLR 63 419 0 1 1630 25 51 0 0 chr6 137012950 137012989 -12504048 + AT_rich Low_complexity Low_complexity 1 39 0 1 1630 242 246 78 47 chr6 137013560 137013688 -12503349 + Lx4A LINE L1 5700 5831 -1227 1 1630 438 317 87 16 chr6 137014368 137014551 -12502486 + B4A SINE B4 69 264 -28 1 1630 548 190 16 8 chr6 137014818 137014940 -12502097 + RSINE1 SINE B4 2 124 -41 2 1630 387 0 0 0 chr6 137014940 137014983 -12502054 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1630 395 280 27 20 chr6 137016282 137016428 -12500609 + B1F SINE Alu 2 148 -1 2 1630 351 65 0 0 chr6 137016650 137016696 -12500341 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2 1630 1172 56 0 0 chr6 137016698 137016840 -12500197 - B1_Mus1 SINE Alu -6 142 1 2 1630 619 156 0 16 chr6 137017362 137017482 -12499555 + PB1D9 SINE Alu 7 115 -34 2 1630 290 292 60 13 chr6 137017559 137017708 -12499329 - Tigger15a DNA TcMar -31 684 529 2 1630 1128 82 0 13 chr6 137017895 137018044 -12498993 - B1_Mus1 SINE Alu -1 147 1 2 1630 371 264 96 57 chr6 137018207 137018364 -12498673 + RSINE1 SINE B4 2 164 -1 2 1630 23 0 0 0 chr6 137018933 137018956 -12498081 + AT_rich Low_complexity Low_complexity 1 23 0 2 1630 689 241 10 62 chr6 137019405 137019613 -12497424 - B3A SINE B2 -1 197 1 3 1630 333 320 7 39 chr6 137019657 137019810 -12497227 - L2a LINE L2 -337 3089 2942 3 1630 430 272 86 26 chr6 137020290 137020441 -12496596 + RSINE1 SINE B4 2 161 -4 3 1630 239 360 0 0 chr6 137020496 137020571 -12496466 + ID4_ SINE ID 2 76 -7 3 1630 275 0 29 0 chr6 137020656 137020691 -12496346 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1630 207 100 0 0 chr6 137021217 137021247 -12495790 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1630 787 108 8 8 chr6 137021278 137021408 -12495629 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 3 1630 533 270 31 25 chr6 137021411 137021574 -12495463 - RSINE1 SINE B4 0 165 2 3 1630 390 21 0 0 chr6 137022494 137022541 -12494496 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1630 570 254 16 8 chr6 137022544 137022671 -12494366 - RSINE1 SINE B4 -36 129 2 3 1630 2916 118 48 33 chr6 137023739 137024255 -12492782 + RLTR28 LTR ERVL 1 524 0 4 1630 2405 62 6 64 chr6 137025664 137026006 -12491031 + ORR1A2 LTR MaLR 4 325 -2 4 1630 237 254 111 0 chr6 137026016 137026079 -12490958 - PB1D9 SINE Alu -42 78 9 4 1630 595 298 73 11 chr6 137026749 137026969 -12490068 + B4A SINE B4 19 242 -50 4 1630 678 167 33 0 chr6 137026962 137027082 -12489955 + B3 SINE B2 5 128 -88 4 1630 836 108 8 0 chr6 137028578 137028708 -12488329 + (TTC)n Simple_repeat Simple_repeat 1 131 0 4 1630 27393 123 14 18 chr6 137028729 137032530 -12484507 - L1_Mus4 LINE L1 -11 6625 2906 4 1630 1121 82 0 0 chr6 137032530 137032677 -12484360 - B1_Mus2 SINE Alu 0 147 1 4 1630 27393 145 11 22 chr6 137032677 137034823 -12482214 - L1_Mus4 LINE L1 -2978 2905 718 4 1630 27 0 0 0 chr6 137035762 137035789 -12481248 + AT_rich Low_complexity Low_complexity 1 27 0 4 1630 245 232 0 0 chr6 137035789 137035845 -12481192 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1630 333 0 0 0 chr6 137035864 137035901 -12481136 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1630 358 273 0 0 chr6 137035907 137035984 -12481053 - B3A SINE B2 -36 162 86 5 1630 844 270 97 0 chr6 137036002 137036280 -12480757 + MTD LTR MaLR 115 419 0 5 1630 261 0 0 0 chr6 137036359 137036388 -12480649 + (TA)n Simple_repeat Simple_repeat 1 29 0 5 1630 381 43 0 0 chr6 137037572 137037619 -12479418 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 5 1630 197 224 191 45 chr6 137037619 137037708 -12479329 - L2a LINE L2 -17 3409 3308 5 1630 244 342 53 27 chr6 137037841 137037991 -12479046 - L2a LINE L2 -340 3086 2933 5 1630 3703 165 43 14 chr6 137038376 137039076 -12477961 + RMER6D LTR ERVK 1 720 0 5 1630 492 309 137 25 chr6 137039124 137039569 -12477468 + L1_Rod LINE L1 5345 5839 -8 5 1630 446 216 29 10 chr6 137040663 137040766 -12476271 - ORR1E LTR MaLR -247 112 8 5 1630 442 140 151 0 chr6 137041424 137041517 -12475520 + MTD LTR MaLR 146 252 -167 5 1630 2094 177 42 118 chr6 137041511 137042055 -12474982 - RLTR18B LTR ERVK -9 503 1 6 1630 573 213 104 26 chr6 137042055 137042190 -12474847 + MTD LTR MaLR 271 417 -2 5 1630 351 0 0 0 chr6 137042690 137042729 -12474308 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 6 1630 205 169 77 0 chr6 137043503 137043568 -12473469 + CT-rich Low_complexity Low_complexity 4 73 0 6 1630 534 280 55 14 chr6 137044091 137044236 -12472801 + RSINE1 SINE B4 13 163 -2 6 1630 180 0 0 0 chr6 137044276 137044296 -12472741 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1630 2051 140 94 59 chr6 137044598 137045054 -12471983 + RLTR20D LTR ERVK 5 476 -92 6 1630 883 147 11 0 chr6 137045078 137045255 -12471782 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1630 585 147 20 0 chr6 137045268 137045370 -12471667 + RLTR20D LTR ERVK 465 568 0 6 1630 753 61 0 0 chr6 137045486 137045585 -12471452 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 6 1630 321 267 161 0 chr6 137045969 137046085 -12470952 - B1F SINE Alu -4 145 8 6 1630 271 214 29 0 chr6 137046192 137046262 -12470775 - PB1D10 SINE Alu -5 112 41 6 1630 385 291 80 25 chr6 137049785 137049986 -12467051 + MLT1C LTR MaLR 40 251 -216 7 1630 269 350 87 27 chr6 137050300 137050485 -12466552 + MLT1C LTR MaLR 260 455 -12 7 1630 252 191 0 0 chr6 137050806 137050890 -12466147 + A-rich Low_complexity Low_complexity 1 84 0 7 1630 198 0 0 0 chr6 137051456 137051478 -12465559 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 7 1630 41 58 0 0 chr6 137051788 137051857 -12465180 + AT_rich Low_complexity Low_complexity 1 69 0 7 1630 8476 39 4 0 chr6 137052067 137053116 -12463921 - L1Md_F2 LINE L1 0 6582 5530 7 1630 305 307 22 4 chr6 137053612 137053742 -12463295 + MIR SINE MIR 110 251 -17 7 1630 186 328 142 8 chr6 137055468 137055588 -12461449 - MIR3 SINE MIR -34 174 39 7 1630 4415 160 40 45 chr6 137055781 137056778 -12460259 + RLTR25A LTR ERVK 1 1027 -1 7 1630 689 281 46 110 chr6 137057332 137057724 -12459313 - MTEa LTR MaLR -12 367 1 7 1630 730 230 29 10 chr6 137060297 137060502 -12456535 + ID_B1 SINE B4 6 213 -11 7 1630 1920 94 53 31 chr6 137060521 137060789 -12456248 + ORR1A2 LTR MaLR 1 285 -42 8 1630 2709 55 0 0 chr6 137060789 137061116 -12455921 + L1Md_T LINE L1 6256 6582 0 8 1630 1920 94 53 31 chr6 137061116 137061165 -12455872 + ORR1A2 LTR MaLR 286 325 -2 8 1630 1213 76 63 17 chr6 137061318 137061493 -12455544 + B2_Mm2 SINE B2 4 186 -9 8 1630 201 231 0 0 chr6 137061975 137062014 -12455023 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 8 1630 183 269 19 0 chr6 137062624 137062676 -12454361 - MER5A DNA MER1_type -67 122 70 8 1630 239 54 27 0 chr6 137063297 137063334 -12453703 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 8 1630 780 168 30 5 chr6 137063336 137063518 -12453519 - B2_Mm2 SINE B2 -4 194 1 8 1630 1486 198 54 43 chr6 137064256 137064626 -12452411 + ORR1D1 LTR MaLR 1 374 0 8 1630 309 246 0 0 chr6 137064670 137064731 -12452306 - ID SINE ID -163 61 1 8 1630 254 376 15 29 chr6 137064946 137065083 -12451954 + MLT2B1 LTR ERVL 1 135 -421 8 1630 342 264 0 0 chr6 137065094 137065185 -12451852 + B4 SINE B4 2 92 -200 9 1630 303 28 0 0 chr6 137065276 137065312 -12451725 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1630 279 114 0 0 chr6 137065312 137065355 -12451682 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1630 367 263 114 72 chr6 137065432 137065655 -12451382 + MLT2B1 LTR ERVL 314 560 -7 8 1630 441 182 0 0 chr6 137066018 137066117 -12450920 + (TG)n Simple_repeat Simple_repeat 1 99 0 9 1630 619 291 31 180 chr6 137066135 137066462 -12450575 - B4 SINE B4 -8 284 7 9 1630 352 243 25 12 chr6 137066482 137066650 -12450387 + L1M3 LINE L1 5484 5655 -642 9 1630 405 327 5 36 chr6 137067083 137067302 -12449735 - L1MA4A LINE L1 -271 6032 5821 9 1630 1490 284 80 58 chr6 137067540 137068582 -12448455 + L1M2 LINE L1 2913 3977 -2166 9 1630 1869 140 89 32 chr6 137068795 137069142 -12447895 - ORR1B2 LTR MaLR 0 367 1 9 1630 831 123 79 14 chr6 137069292 137069432 -12447605 + B1_Mur1 SINE Alu 1 149 0 9 1630 1045 278 69 18 chr6 137069432 137069882 -12447155 - L1MB8 LINE L1 -20 6656 6184 1 1630 382 138 27 18 chr6 137069941 137070052 -12446985 + GA-rich Low_complexity Low_complexity 2 113 0 1 1630 275 226 249 0 chr6 137070062 137070166 -12446871 - L1MB8 LINE L1 -555 6121 5993 1 1630 248 301 42 18 chr6 137070399 137070565 -12446472 - L1MB8 LINE L1 -789 5855 5686 1 1630 416 296 0 50 chr6 137070604 137070725 -12446312 - ID_B1 SINE B4 -1 223 109 1 1630 189 0 0 0 chr6 137070745 137070766 -12446271 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1630 529 281 97 81 chr6 137070811 137071301 -12445736 - L1MB8 LINE L1 -1016 5622 5123 1 1630 216 309 0 0 chr6 137071312 137071367 -12445670 + B3A SINE B2 2 56 -142 1 1630 462 335 35 6 chr6 137071410 137071581 -12445456 - L1MB8 LINE L1 -5811 731 556 1 1630 180 0 0 0 chr6 137071837 137071857 -12445180 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1630 745 220 28 17 chr6 137072547 137072702 -12444335 + B3A SINE B2 2 159 -39 1 1630 648 0 0 0 chr6 137072702 137072774 -12444263 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1630 745 220 28 17 chr6 137072774 137072798 -12444239 + B3A SINE B2 160 183 -15 1 1630 21 57 0 0 chr6 137072820 137072855 -12444182 + AT_rich Low_complexity Low_complexity 1 35 0 1 1630 359 191 40 50 chr6 137072888 137072987 -12444050 + ID_B1 SINE B4 105 202 -22 1 1630 207 244 0 0 chr6 137075045 137075086 -12441951 + C-rich Low_complexity Low_complexity 1 41 0 1 1630 280 276 35 0 chr6 137075951 137076038 -12440999 + MIRc SINE MIR 52 141 -127 1 1630 236 277 0 57 chr6 137076760 137076848 -12440189 + ORR1D2 LTR MaLR 276 358 -12 1 1630 500 279 44 44 chr6 137076898 137077078 -12439959 + B3A SINE B2 18 197 -1 1 1630 621 0 0 0 chr6 137077253 137077322 -12439715 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1 1630 983 58 7 0 chr6 137078545 137078684 -12438353 + (TCTA)n Simple_repeat Simple_repeat 2 141 0 1 1630 916 224 14 28 chr6 137078702 137078918 -12438119 - ID_B1 SINE B4 -10 214 2 1 1630 25 0 0 0 chr6 137080315 137080340 -12436697 + AT_rich Low_complexity Low_complexity 1 25 0 1 1630 752 103 0 8 chr6 137081996 137082113 -12434924 + (TCCC)n Simple_repeat Simple_repeat 1 116 0 1 1630 573 165 45 9 chr6 137083532 137083642 -12433395 + B1_Mur4 SINE Alu 12 125 -25 1 1630 628 32 43 0 chr6 137083652 137083745 -12433292 + (CAAAC)n Simple_repeat Simple_repeat 4 100 0 1 1630 506 211 0 27 chr6 137083760 137083945 -12433092 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1630 1943 162 9 31 chr6 137085111 137085530 -12431507 + RMER17C LTR ERVK 1 410 0 1 1630 1448 60 0 0 chr6 137086439 137086621 -12430416 - L1Md_F3 LINE L1 -240 6342 6161 1 1630 1776 44 40 4 chr6 137086622 137086849 -12430188 + L1Md_F3 LINE L1 6350 6584 0 1 1630 276 357 82 19 chr6 137087048 137087407 -12429630 + L2b LINE L2 3035 3422 -4 1 1630 549 0 0 0 chr6 137088152 137088213 -12428824 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1630 271 253 13 0 chr6 137088256 137088331 -12428706 - MLT1E1A LTR MaLR -9 671 596 1 1630 430 319 0 0 chr6 137088337 137088450 -12428587 - ID_B1 SINE B4 -21 203 91 1 1630 670 89 9 9 chr6 137089292 137089405 -12427632 + (TG)n Simple_repeat Simple_repeat 2 114 0 1 1630 357 282 97 21 chr6 137089457 137089602 -12427435 - B4A SINE B4 -23 269 114 1 1630 339 0 59 0 chr6 137089797 137089848 -12427189 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1630 198 0 0 0 chr6 137089848 137089870 -12427167 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1630 447 281 37 12 chr6 137090268 137090430 -12426607 - L1MD3 LINE L1 -21 7974 7809 1 1630 1257 151 102 19 chr6 137090547 137090811 -12426226 - Lx9 LINE L1 0 7644 7359 1 1630 211 184 0 0 chr6 137091416 137091454 -12425583 + G-rich Low_complexity Low_complexity 1 38 0 1 1630 236 131 0 21 chr6 137091570 137091617 -12425420 + G-rich Low_complexity Low_complexity 1 46 0 1 1630 832 27 0 26 chr6 137091864 137091937 -12425100 + (TTC)n Simple_repeat Simple_repeat 1 71 0 1 1630 1144 101 6 6 chr6 137091937 137092116 -12424921 + (TCC)n Simple_repeat Simple_repeat 2 180 0 1 1630 832 27 0 26 chr6 137092116 137092155 -12424882 + (TTC)n Simple_repeat Simple_repeat 1 39 0 1 1630 301 254 57 43 chr6 137092155 137092295 -12424742 + Lx6 LINE L1 7316 7457 -3 1 1630 437 0 19 0 chr6 137092727 137092780 -12424257 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1 1630 522 290 44 19 chr6 137092789 137092947 -12424090 - B3A SINE B2 -36 162 1 1 1630 210 31 62 0 chr6 137092977 137093009 -12424028 - B1_Mur1 SINE Alu -43 106 73 1 1630 529 318 11 23 chr6 137093143 137093317 -12423720 + B3A SINE B2 2 173 -25 1 1630 1145 265 47 14 chr6 137094770 137095133 -12421904 - MTEb LTR MaLR -4 375 1 1 1630 361 301 0 0 chr6 137095478 137095651 -12421386 + (CCCA)n Simple_repeat Simple_repeat 1 173 0 1 1630 290 335 13 0 chr6 137095736 137095888 -12421149 + (CAGT)n Simple_repeat Simple_repeat 1 154 0 1 1630 688 0 0 0 chr6 137096433 137096516 -12420521 + L1Md_A LINE L1 6500 6582 0 1 1630 357 233 96 121 chr6 137096765 137096931 -12420106 - MLT1F-int LTR MaLR 0 1489 1328 1 1630 469 247 0 0 chr6 137097388 137097477 -12419560 - RSINE1 SINE B4 -29 136 48 1 1630 496 95 12 12 chr6 137097659 137097744 -12419293 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 1 1630 428 188 275 38 chr6 137097989 137098149 -12418888 + B3A SINE B2 1 198 0 1 1630 366 291 95 98 chr6 137099150 137099508 -12417529 + ORR1E LTR MaLR 2 358 -1 1 1630 372 135 0 0 chr6 137099874 137099948 -12417089 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1630 477 274 82 0 chr6 137099948 137100021 -12417016 - RSINE1 SINE B4 -4 161 77 1 1630 306 0 0 0 chr6 137100021 137100055 -12416982 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1630 477 274 82 0 chr6 137100055 137100127 -12416910 - RSINE1 SINE B4 -89 76 5 1 1630 768 263 23 28 chr6 137100366 137100581 -12416456 + ID_B1 SINE B4 2 215 -9 1 1630 293 307 123 0 chr6 137100611 137100725 -12416312 + B1F2 SINE Alu 22 149 0 1 1630 23 0 0 0 chr6 137101019 137101042 -12415995 + AT_rich Low_complexity Low_complexity 1 23 0 1 1631 182 91 30 0 chr6 137102513 137102546 -12414491 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 1 1631 543 233 171 0 chr6 137102546 137102675 -12414362 - RSINE1 SINE B4 -10 155 5 1 1631 831 252 101 27 chr6 137102799 137103056 -12413981 + B4 SINE B4 4 279 -13 1 1631 630 0 0 0 chr6 137103056 137103126 -12413911 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1631 192 211 0 0 chr6 137103670 137103708 -12413329 + L3 LINE CR1 4155 4192 -297 1 1631 575 198 183 59 chr6 137105040 137105330 -12411707 + ORR1E LTR MaLR 25 350 -9 1 1631 592 192 0 119 chr6 137105646 137105776 -12411261 + B1_Mur4 SINE Alu 10 124 -26 1 1631 3101 66 12 32 chr6 137105776 137105991 -12411046 - MTB LTR MaLR 0 400 196 1 1631 189 74 0 0 chr6 137105991 137106018 -12411019 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1631 738 80 204 0 chr6 137106018 137106131 -12410906 - B1_Mus1 SINE Alu -11 137 2 1 1631 3101 66 12 32 chr6 137106131 137106322 -12410715 - MTB LTR MaLR -205 195 2 1 1631 592 192 0 119 chr6 137106322 137106351 -12410686 + B1_Mur4 SINE Alu 125 150 0 1 1631 595 319 53 78 chr6 137106478 137106988 -12410049 + L1MA7 LINE L1 5681 6177 -114 1 1631 245 292 156 35 chr6 137106994 137107193 -12409844 + ID_B1 SINE B4 2 224 0 1 1631 538 201 94 29 chr6 137107194 137107332 -12409705 + B3A SINE B2 1 147 -51 1 1631 670 273 80 10 chr6 137107728 137107928 -12409109 + ID_B1 SINE B4 5 218 -6 1 1631 194 0 0 37 chr6 137107929 137107956 -12409081 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1 1631 225 0 0 0 chr6 137108364 137108389 -12408648 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1631 22 0 0 0 chr6 137108766 137108788 -12408249 + AT_rich Low_complexity Low_complexity 1 22 0 1 1631 393 22 0 0 chr6 137108982 137109028 -12408009 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1631 234 0 0 0 chr6 137109097 137109123 -12407914 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1631 887 280 59 0 chr6 137109811 137110082 -12406955 + B4 SINE B4 2 288 -4 1 1631 203 196 20 0 chr6 137110116 137110167 -12406870 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1631 448 254 7 119 chr6 137110562 137110705 -12406332 + RSINE1 SINE B4 3 129 -36 1 1631 352 181 12 12 chr6 137110718 137110802 -12406235 + CT-rich Low_complexity Low_complexity 1 84 0 1 1631 27 0 0 0 chr6 137111547 137111574 -12405463 + AT_rich Low_complexity Low_complexity 1 27 0 1 1631 584 242 118 57 chr6 137111582 137111781 -12405256 - B4A SINE B4 -2 290 77 1 1631 218 211 58 0 chr6 137111781 137111833 -12405204 + BC1_Mm scRNA scRNA 1 55 -97 1 1631 807 40 0 0 chr6 137111980 137112079 -12404958 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 1 1631 307 272 0 24 chr6 137112812 137112895 -12404142 + ID4_ SINE ID 2 82 -1 1 1631 564 95 0 0 chr6 137113678 137113762 -12403275 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1631 476 285 41 35 chr6 137113785 137114077 -12402960 - MTE2a LTR MaLR -35 344 1 1 1631 414 241 242 42 chr6 137114199 137114364 -12402673 + B3A SINE B2 1 198 0 1 1631 210 390 67 82 chr6 137115046 137115314 -12401723 - L3 LINE CR1 -11 4478 4215 1 1631 368 242 223 8 chr6 137115782 137115903 -12401134 + B1F2 SINE Alu 2 148 -1 1 1631 207 0 0 0 chr6 137115904 137115927 -12401110 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 1 1631 349 216 89 141 chr6 137116291 137116426 -12400611 + B1F SINE Alu 22 149 0 1 1631 237 132 0 0 chr6 137117481 137117519 -12399518 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1631 263 288 62 90 chr6 137118735 137118880 -12398157 - MIRc SINE MIR -32 236 93 1 1631 190 81 54 0 chr6 137119784 137119821 -12397216 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1631 1822 199 68 55 chr6 137120246 137120686 -12396351 - RLTR41 LTR ERV1 0 446 1 1 1631 501 298 12 12 chr6 137120815 137120978 -12396059 - Lx8 LINE L1 -1649 5824 5662 1 1631 2515 169 108 55 chr6 137120983 137121564 -12395473 - RLTR18 LTR ERVK -4 612 1 1 1631 2022 98 5 153 chr6 137122267 137122653 -12394384 + ORR1A4 LTR MaLR 1 329 0 2 1631 1574 206 192 42 chr6 137122984 137123125 -12393912 + MT2A LTR ERVL 1 126 -407 2 1631 1491 70 14 5 chr6 137123125 137123339 -12393698 - L1_Mus3 LINE L1 -6 6632 6417 2 1631 1574 206 192 42 chr6 137123339 137123598 -12393439 + MT2A LTR ERVL 127 543 -58 2 1631 474 18 0 0 chr6 137123598 137123653 -12393384 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1631 899 264 92 51 chr6 137123653 137123689 -12393348 + MT2A LTR ERVL 544 600 -1 2 1631 270 273 13 0 chr6 137123786 137123863 -12393174 - MLT1A LTR MaLR -293 81 4 2 1631 301 283 123 25 chr6 137124176 137124339 -12392698 + L1MEf LINE L1 1243 1421 -4779 2 1631 245 254 45 22 chr6 137124745 137124849 -12392188 + ID4 SINE ID 5 104 -48 2 1631 389 278 191 43 chr6 137124898 137125086 -12391951 + B3 SINE B2 1 216 0 2 1631 409 337 37 5 chr6 137125111 137125302 -12391735 - Lx8 LINE L1 -358 7115 6919 2 1631 890 173 60 22 chr6 137125624 137125807 -12391230 + B2_Mm2 SINE B2 2 191 -4 2 1631 608 0 14 0 chr6 137126056 137126128 -12390909 + (GA)n Simple_repeat Simple_repeat 1 73 0 2 1631 975 42 0 0 chr6 137126128 137126248 -12390789 + (GAA)n Simple_repeat Simple_repeat 3 122 0 2 1631 1239 257 116 42 chr6 137126477 137126952 -12390085 + Lx8 LINE L1 6700 7209 -264 2 1631 315 49 0 0 chr6 137127081 137127122 -12389915 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1631 400 204 11 0 chr6 137129279 137129367 -12387670 + Lx9 LINE L1 7072 7160 -484 2 1631 1124 186 13 26 chr6 137129833 137130060 -12386977 - URR1A DNA MER1_type 0 226 3 2 1631 270 261 0 0 chr6 137130987 137131052 -12385985 + C-rich Low_complexity Low_complexity 5 69 0 2 1631 334 304 91 32 chr6 137132518 137132705 -12384332 + B3A SINE B2 1 198 0 2 1631 324 239 0 33 chr6 137132878 137132969 -12384068 - RSINE1 SINE B4 -5 160 73 2 1631 270 0 0 0 chr6 137133102 137133132 -12383905 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1631 736 180 176 27 chr6 137133616 137133671 -12383366 - B3 SINE B2 0 216 163 2 1631 585 0 0 0 chr6 137133671 137133736 -12383301 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1631 736 180 176 27 chr6 137133736 137133868 -12383169 - B3 SINE B2 -54 162 3 2 1631 302 242 130 10 chr6 137134112 137134212 -12382825 + ORR1E LTR MaLR 19 130 -229 2 1631 650 258 82 10 chr6 137134378 137134574 -12382463 - ID_B1 SINE B4 -14 210 1 2 1631 387 303 49 103 chr6 137134819 137134917 -12382120 + Lx8 LINE L1 7203 7288 -185 2 1631 540 0 0 0 chr6 137134917 137134977 -12382060 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1631 387 303 49 103 chr6 137134977 137135062 -12381975 + Lx8 LINE L1 7289 7376 -97 2 1631 1146 175 8 63 chr6 137135805 137136043 -12380994 + URR1B DNA MER1_type 1 225 0 2 1631 215 309 71 47 chr6 137136483 137136568 -12380469 + B3 SINE B2 92 178 -38 2 1631 1155 91 0 0 chr6 137136573 137136816 -12380221 + (CA)n Simple_repeat Simple_repeat 1 243 0 2 1631 24 0 0 0 chr6 137136858 137136882 -12380155 + AT_rich Low_complexity Low_complexity 1 24 0 2 1631 443 130 13 0 chr6 137136944 137137021 -12380016 + (GA)n Simple_repeat Simple_repeat 2 79 0 2 1631 548 288 48 0 chr6 137137677 137137823 -12379214 + RSINE1 SINE B4 2 154 -11 2 1631 229 303 32 24 chr6 137138088 137138213 -12378824 + GA-rich Low_complexity Low_complexity 1 126 0 2 1631 2212 211 69 21 chr6 137138566 137139088 -12377949 - RLTR20B1 LTR ERVK -16 547 1 2 1631 948 227 141 0 chr6 137139735 137139977 -12377060 - MTEa LTR MaLR -103 276 1 2 1631 566 215 0 36 chr6 137140897 137141008 -12376029 - B3A SINE B2 -91 107 1 2 1631 237 62 62 0 chr6 137141295 137141343 -12375694 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 2 1631 1374 57 0 0 chr6 137141387 137141563 -12375474 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 2 1631 910 258 194 3 chr6 137142608 137142958 -12374079 - MTD LTR MaLR -2 417 1 2 1631 1573 122 127 43 chr6 137143077 137143377 -12373660 - ORR1A2 LTR MaLR -2 325 1 2 1631 305 244 99 30 chr6 137145525 137145656 -12371381 - B3A SINE B2 -51 147 8 2 1631 2891 200 36 74 chr6 137145826 137146527 -12370510 - RMER1C Other Other 0 1342 669 2 1631 241 283 140 10 chr6 137146580 137146680 -12370357 + L2a LINE L2 3300 3412 -14 2 1631 567 212 13 7 chr6 137146687 137146839 -12370198 + (TATATG)n Simple_repeat Simple_repeat 3 155 0 2 1631 202 42 0 0 chr6 137147156 137147180 -12369857 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1631 390 184 0 0 chr6 137147180 137147256 -12369781 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1631 12210 23 0 0 chr6 137147411 137149488 -12367549 - L1Md_T LINE L1 0 6582 4506 2 1631 382 278 10 0 chr6 137149892 137149989 -12367048 - PB1D10 SINE Alu -9 108 11 2 1631 705 203 22 15 chr6 137150712 137150847 -12366190 - B1F2 SINE Alu -1 148 13 2 1631 283 275 0 130 chr6 137150776 137150868 -12366169 - MT2B2 LTR ERVL -344 240 161 2 1631 1473 209 103 24 chr6 137150887 137151264 -12365773 - MTD LTR MaLR -10 409 3 2 1631 486 0 0 0 chr6 137152218 137152272 -12364765 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1631 306 158 11 28 chr6 137152352 137152462 -12364575 - ORR1B1 LTR MaLR -8 386 253 2 1631 6719 72 0 31 chr6 137152782 137153675 -12363362 - L1Md_F2 LINE L1 -27 6555 5691 2 1631 646 169 8 8 chr6 137153660 137153785 -12363252 + L1Md_F LINE L1 377 501 -6018 2 1631 2101 129 28 53 chr6 137153790 137154150 -12362887 - ORR1B1 LTR MaLR -43 351 1 2 1631 1049 281 24 8 chr6 137154150 137154396 -12362641 - B4A SINE B4 -42 250 1 2 1631 833 151 22 0 chr6 137156278 137156417 -12360620 + B1_Mur4 SINE Alu 1 142 -8 2 1631 289 244 22 55 chr6 137156545 137156636 -12360401 + MTEa LTR MaLR 278 365 -14 2 1631 480 290 127 46 chr6 137156909 137157256 -12359781 - MTEa LTR MaLR -1 378 4 2 1631 525 245 12 37 chr6 137158005 137158166 -12358871 - RSINE1 SINE B4 -6 159 3 2 1631 480 295 19 48 chr6 137158207 137158373 -12358664 - MIR SINE MIR -56 206 50 2 1631 434 338 51 11 chr6 137159614 137159889 -12357148 + B4A SINE B4 1 286 -6 2 1631 357 273 36 18 chr6 137159944 137160056 -12356981 + LTR16A1 LTR ERVL 289 402 -54 2 1631 265 290 0 0 chr6 137160109 137160171 -12356866 + LTR16A1 LTR ERVL 391 452 -4 2 1631 474 254 77 0 chr6 137160361 137160491 -12356546 + RSINE1 SINE B4 5 144 -21 2 1631 240 200 0 0 chr6 137160603 137160653 -12356384 + (TATG)n Simple_repeat Simple_repeat 1 50 0 2 1631 655 217 161 16 chr6 137161272 137161464 -12355573 + ID_B1 SINE B4 2 221 -3 2 1631 690 47 0 0 chr6 137162285 137162371 -12354666 + (TC)n Simple_repeat Simple_repeat 2 87 0 2 1631 831 301 111 14 chr6 137162371 137162805 -12354232 + L1MA6 LINE L1 5796 6271 -29 2 1631 219 36 0 0 chr6 137162824 137162852 -12354185 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1631 354 91 0 0 chr6 137162913 137162968 -12354069 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1631 26 30 0 0 chr6 137162968 137163001 -12354036 + AT_rich Low_complexity Low_complexity 1 33 0 2 1631 641 296 39 19 chr6 137163796 137164003 -12353034 - Tigger7 DNA MER2_type -2278 213 3 2 1631 585 0 0 0 chr6 137164673 137164738 -12352299 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1631 297 0 0 0 chr6 137164738 137164770 -12352267 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1631 538 269 91 94 chr6 137164800 137165075 -12351962 - B4 SINE B4 -18 274 1 2 1631 854 259 45 0 chr6 137165714 137165915 -12351122 + B4 SINE B4 9 218 -74 2 1631 295 157 24 12 chr6 137165915 137165999 -12351038 + (CAAAT)n Simple_repeat Simple_repeat 5 89 0 2 1631 244 306 0 0 chr6 137166056 137166128 -12350909 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1631 36053 94 20 14 chr6 137167482 137173207 -12343830 - L1Md_F2 LINE L1 -603 5979 217 2 1631 426 232 135 8 chr6 137174137 137174263 -12342774 + B1F SINE Alu 3 144 -5 2 1631 225 294 0 64 chr6 137174276 137174385 -12342652 + BC1_Mm scRNA scRNA 3 104 -48 2 1631 724 224 121 30 chr6 137174462 137174660 -12342377 - B3 SINE B2 0 216 1 2 1631 349 276 58 0 chr6 137174707 137174794 -12342243 - RSINE1 SINE B4 -40 125 34 2 1631 213 121 0 0 chr6 137175344 137175377 -12341660 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1631 42126 6 0 0 chr6 137176182 137182611 -12334426 - L1Md_A LINE L1 0 6582 154 2 1631 374 322 0 25 chr6 137182851 137182969 -12334068 + B4A SINE B4 172 286 -6 2 1631 236 330 108 49 chr6 137183078 137183301 -12333736 - Charlie1 DNA MER1_type -500 2281 2046 2 1631 1191 77 7 0 chr6 137183302 137183457 -12333580 + B2_Mm2 SINE B2 1 156 -39 2 1631 349 287 22 33 chr6 137183885 137183975 -12333062 - PB1D10 SINE Alu -28 89 1 2 1631 255 271 0 0 chr6 137184037 137184096 -12332941 + CT-rich Low_complexity Low_complexity 4 62 0 2 1631 302 258 118 65 chr6 137184379 137184549 -12332488 + L1MA8 LINE L1 4664 4842 -1301 2 1631 923 272 56 16 chr6 137184577 137185153 -12331884 + L1MA8 LINE L1 5046 5652 -639 2 1631 315 182 150 26 chr6 137185367 137185480 -12331557 + L1MA8 LINE L1 6031 6157 -134 2 1631 610 231 192 32 chr6 137185503 137185695 -12331342 + B4A SINE B4 2 228 -64 2 1631 279 255 112 52 chr6 137185695 137185811 -12331226 + B2_Mm2 SINE B2 1 123 -72 2 1631 337 277 0 0 chr6 137185855 137185920 -12331117 + B4A SINE B4 223 287 -5 2 1631 261 83 0 0 chr6 137185973 137186009 -12331028 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2 1631 477 230 181 19 chr6 137187023 137187178 -12329859 - B3A SINE B2 -18 180 1 2 1631 506 290 47 0 chr6 137187333 137187502 -12329535 - L1M3 LINE L1 -788 5352 5176 2 1631 747 230 16 53 chr6 137188462 137188491 -12328546 - B3A SINE B2 -17 181 153 2 1631 1377 61 0 0 chr6 137188491 137188671 -12328366 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1631 747 230 16 53 chr6 137188671 137188829 -12328208 - B3A SINE B2 -46 152 1 2 1631 848 209 133 5 chr6 137189327 137189515 -12327522 - B3 SINE B2 0 216 5 2 1631 1086 146 161 0 chr6 137189719 137189911 -12327126 + URR1B DNA MER1_type 1 223 -2 3 1631 794 262 60 44 chr6 137190284 137190820 -12326217 + L1MC LINE L1 5054 5601 -2184 3 1631 910 281 32 118 chr6 137191274 137191774 -12325263 - Lx8 LINE L1 -11 7462 7006 3 1631 1882 291 47 28 chr6 137191776 137192410 -12324627 + Lx8 LINE L1 6340 6985 -488 3 1631 22 0 0 0 chr6 137193053 137193075 -12323962 + AT_rich Low_complexity Low_complexity 1 22 0 3 1631 200 122 0 24 chr6 137193928 137193950 -12323087 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1631 486 0 0 0 chr6 137193950 137194004 -12323033 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1631 200 122 0 24 chr6 137194004 137194023 -12323014 + (TG)n Simple_repeat Simple_repeat 1 19 0 3 1631 324 0 0 0 chr6 137194045 137194081 -12322956 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1631 402 39 0 0 chr6 137194081 137194132 -12322905 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1631 240 172 0 0 chr6 137194173 137194231 -12322806 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1631 268 318 3 22 chr6 137194231 137194322 -12322715 - B1F SINE Alu -10 110 20 3 1631 202 278 56 0 chr6 137195521 137195575 -12321462 + L2c LINE L2 3272 3328 -59 3 1631 384 264 11 0 chr6 137195874 137195965 -12321072 + B4A SINE B4 1 92 -200 3 1631 257 151 19 0 chr6 137195967 137196020 -12321017 + GA-rich Low_complexity Low_complexity 2 55 0 3 1631 446 250 29 20 chr6 137196060 137196162 -12320875 + B4 SINE B4 127 229 -63 3 1631 1212 234 0 0 chr6 137196221 137196447 -12320590 - URR1A DNA MER1_type 0 226 1 3 1631 309 316 59 12 chr6 137196532 137196702 -12320335 - L1ME1 LINE L1 -108 6071 5894 3 1631 261 0 0 0 chr6 137199462 137199491 -12317546 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1631 22 35 0 0 chr6 137201084 137201113 -12315924 + GC_rich Low_complexity Low_complexity 1 29 0 3 1631 788 282 90 43 chr6 137204716 137204994 -12312043 - B4A SINE B4 0 292 2 3 1631 775 239 31 59 chr6 137205652 137205820 -12311217 + B3 SINE B2 1 163 -53 3 1631 408 88 0 0 chr6 137205820 137205877 -12311160 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1631 775 239 31 59 chr6 137205877 137205930 -12311107 + B3 SINE B2 164 216 0 3 1631 27 0 0 0 chr6 137205936 137205963 -12311074 + AT_rich Low_complexity Low_complexity 1 27 0 3 1631 250 286 129 0 chr6 137205979 137206049 -12310988 + ID_B1 SINE B4 98 176 -48 3 1631 225 272 92 61 chr6 137206049 137206077 -12310960 + PB1D10 SINE Alu 17 117 0 3 1631 303 261 34 59 chr6 137206101 137206219 -12310818 + PB1D10 SINE Alu 1 115 -2 3 1631 426 39 0 0 chr6 137206264 137206316 -12310721 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1631 1139 214 119 18 chr6 137206651 137206937 -12310100 + ORR1E LTR MaLR 4 318 -41 3 1631 486 266 62 0 chr6 137207589 137207717 -12309320 - RSINE1 SINE B4 -29 136 1 3 1631 22 56 0 0 chr6 137207844 137207880 -12309157 + AT_rich Low_complexity Low_complexity 1 36 0 3 1631 222 37 0 0 chr6 137208116 137208143 -12308894 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 1631 208 214 23 35 chr6 137209034 137209121 -12307916 + (TTTAA)n Simple_repeat Simple_repeat 5 90 0 3 1631 772 270 95 16 chr6 137209387 137209639 -12307398 + MTEb LTR MaLR 51 322 -57 3 1631 875 227 43 0 chr6 137209644 137209829 -12307208 + B3 SINE B2 14 206 -10 3 1631 751 129 15 0 chr6 137209843 137209975 -12307062 + (GGGA)n Simple_repeat Simple_repeat 4 137 0 3 1631 1191 107 0 0 chr6 137209986 137210164 -12306873 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 3 1631 227 240 40 0 chr6 137210185 137210235 -12306802 + MTEb LTR MaLR 305 356 -23 3 1631 248 270 136 91 chr6 137210456 137210566 -12306471 + PB1D10 SINE Alu 3 117 0 3 1631 21 0 0 0 chr6 137211342 137211363 -12305674 + AT_rich Low_complexity Low_complexity 1 21 0 3 1631 441 0 0 0 chr6 137211466 137211515 -12305522 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1631 579 316 42 15 chr6 137212861 137213121 -12303916 + L1MD2 LINE L1 5855 6121 -238 3 1631 502 289 46 36 chr6 137213403 137213597 -12303440 - B4A SINE B4 -14 278 83 3 1631 621 0 0 0 chr6 137214855 137214924 -12302113 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1631 590 355 110 7 chr6 137215412 137215704 -12301333 + MER2 DNA MER2_type 1 322 -23 3 1631 193 250 0 0 chr6 137215957 137216005 -12301032 - MIR SINE MIR -109 153 106 3 1631 281 155 17 0 chr6 137216113 137216171 -12300866 + CT-rich Low_complexity Low_complexity 4 62 0 3 1631 318 295 31 21 chr6 137217613 137217710 -12299327 + MIRc SINE MIR 146 243 -25 3 1631 1284 101 16 38 chr6 137218304 137218489 -12298548 - B2_Mm2 SINE B2 -14 181 1 3 1631 354 237 40 56 chr6 137219296 137219421 -12297616 + Lx8 LINE L1 7350 7472 -1 3 1631 733 296 9 5 chr6 137219634 137219851 -12297186 + Lx5 LINE L1 6146 6363 -687 3 1631 1596 295 50 33 chr6 137219853 137220393 -12296644 + Lx5 LINE L1 6484 7032 -18 3 1631 282 333 9 0 chr6 137223129 137223234 -12293803 + PB1D10 SINE Alu 5 110 -7 3 1631 465 301 160 15 chr6 137223459 137223876 -12293161 + MLT1E2 LTR MaLR 115 505 0 3 1631 729 129 0 0 chr6 137223975 137224091 -12292946 + (TTCC)n Simple_repeat Simple_repeat 4 119 0 3 1631 220 382 10 0 chr6 137224091 137224193 -12292844 - PB1D10 SINE Alu -14 103 1 3 1631 282 106 0 0 chr6 137225744 137225791 -12291246 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1631 282 162 0 0 chr6 137225795 137225869 -12291168 + GA-rich Low_complexity Low_complexity 1 74 0 3 1631 204 214 0 23 chr6 137227470 137227513 -12289524 + G-rich Low_complexity Low_complexity 5 46 0 3 1631 539 183 200 0 chr6 137229027 137229142 -12287895 + B1_Mur2 SINE Alu 2 139 -10 3 1631 267 31 0 0 chr6 137229142 137229174 -12287863 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1631 794 195 4 0 chr6 137229326 137229554 -12287483 + GA-rich Low_complexity Low_complexity 1 229 0 3 1631 23 0 0 0 chr6 137231458 137231481 -12285556 + AT_rich Low_complexity Low_complexity 1 23 0 3 1631 1288 277 17 34 chr6 137231777 137232132 -12284905 + Lx6 LINE L1 7091 7439 -21 3 1632 757 30 20 0 chr6 137232542 137232642 -12284395 + (GA)n Simple_repeat Simple_repeat 2 103 0 3 1632 653 113 11 58 chr6 137232642 137232830 -12284207 + GA-rich Low_complexity Low_complexity 2 180 0 3 1632 2270 108 22 19 chr6 137232955 137233314 -12283723 - Lx2 LINE L1 -1 6996 6637 3 1632 664 252 63 15 chr6 137233786 137233991 -12283046 + B3 SINE B2 1 215 -1 3 1632 644 154 0 6 chr6 137234196 137234372 -12282665 + (TA)n Simple_repeat Simple_repeat 2 176 0 3 1632 565 325 44 35 chr6 137234642 137234885 -12282152 + B4 SINE B4 1 251 -41 3 1632 392 276 88 15 chr6 137237851 137237987 -12279050 - B1F1 SINE Alu -3 146 1 3 1632 1195 240 87 60 chr6 137238172 137238620 -12278417 + RMER13A LTR ERVK 1 460 -400 3 1632 755 223 56 28 chr6 137239095 137239275 -12277762 + B3 SINE B2 7 191 -25 3 1632 404 171 0 12 chr6 137239562 137239622 -12277415 + polypyrimidine Low_complexity Low_complexity 26 85 0 3 1632 1196 96 6 0 chr6 137239622 137239799 -12277238 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3 1632 404 171 0 12 chr6 137239799 137239821 -12277216 + polypyrimidine Low_complexity Low_complexity 4 25 0 3 1632 1295 67 0 11 chr6 137239822 137240002 -12277035 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 1632 35 0 0 0 chr6 137240003 137240038 -12276999 + AT_rich Low_complexity Low_complexity 1 35 0 3 1632 264 228 25 12 chr6 137240277 137240357 -12276680 + (TG)n Simple_repeat Simple_repeat 1 81 0 3 1632 245 146 0 20 chr6 137240377 137240426 -12276611 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1632 273 109 0 0 chr6 137240720 137240766 -12276271 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 3 1632 558 44 0 32 chr6 137242089 137242182 -12274855 + (TTATA)n Simple_repeat Simple_repeat 5 94 0 3 1632 893 290 69 55 chr6 137242195 137242614 -12274423 - Lx8 LINE L1 -39 7434 7010 3 1632 248 173 19 0 chr6 137243011 137243063 -12273974 + CT-rich Low_complexity Low_complexity 2 54 0 3 1632 595 257 6 36 chr6 137243137 137243302 -12273735 - ID_B1 SINE B4 -2 222 67 3 1632 389 346 106 27 chr6 137244727 137245095 -12271942 + L1M4 LINE L1 451 847 -5695 3 1632 288 350 58 7 chr6 137245095 137245233 -12271804 + ID_B1 SINE B4 2 146 -78 3 1632 1070 270 60 39 chr6 137245262 137245668 -12271369 + MTE2a LTR MaLR 2 405 -14 3 1632 540 0 0 0 chr6 137245698 137245758 -12271279 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 3 1632 3466 37 0 0 chr6 137245881 137246287 -12270750 + L1Md_T LINE L1 6177 6582 0 3 1632 374 85 4 25 chr6 137246434 137246511 -12270526 + RMER17C LTR ERVK 5 56 -354 3 1632 307 296 102 0 chr6 137247175 137247273 -12269764 - PB1D10 SINE Alu -9 108 1 3 1632 21 36 0 0 chr6 137247320 137247348 -12269689 + AT_rich Low_complexity Low_complexity 1 28 0 3 1632 29 60 0 0 chr6 137247396 137247446 -12269591 + AT_rich Low_complexity Low_complexity 1 50 0 3 1632 531 0 0 0 chr6 137247504 137247563 -12269474 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 3 1632 265 273 26 109 chr6 137248612 137248768 -12268269 - ORR1E LTR MaLR -11 348 206 3 1632 276 100 0 0 chr6 137249037 137249077 -12267960 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 3 1632 1105 252 87 32 chr6 137250350 137250661 -12266376 + Lx8 LINE L1 6549 6876 -597 3 1632 1936 140 127 14 chr6 137251484 137251838 -12265199 - ORR1B1 LTR MaLR 0 394 1 3 1632 4444 167 37 6 chr6 137251838 137252752 -12264285 - ORR1B1-int LTR MaLR 0 1509 567 3 1632 1936 141 19 104 chr6 137253269 137253690 -12263347 - ORR1B1 LTR MaLR -8 386 2 3 1632 8543 160 50 127 chr6 137253691 137255819 -12261218 - ORR1B1-int LTR MaLR 0 1963 1 3 1632 1938 173 58 0 chr6 137255824 137256188 -12260849 - ORR1B1 LTR MaLR -9 385 1 3 1632 1100 67 7 0 chr6 137257511 137257661 -12259376 + (TCCA)n Simple_repeat Simple_repeat 1 151 0 3 1632 1419 61 2 2 chr6 137257672 137258219 -12258818 + (TCCA)n Simple_repeat Simple_repeat 1 547 0 3 1632 433 259 14 56 chr6 137258460 137258603 -12258434 + B3A SINE B2 1 137 -61 3 1632 258 104 14 56 chr6 137258603 137258674 -12258363 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 3 1632 1228 35 7 0 chr6 137258674 137258819 -12258218 - B1_Mus1 SINE Alu -1 147 2 3 1632 189 121 0 0 chr6 137258847 137258880 -12258157 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1632 246 284 35 2 chr6 137259127 137259225 -12257812 - ORR1E LTR MaLR -2 377 279 3 1632 966 238 117 12 chr6 137259232 137259545 -12257492 + ORR1D2 LTR MaLR 43 378 0 3 1632 375 281 120 31 chr6 137259627 137259818 -12257219 - ORR1E LTR MaLR -143 216 9 3 1632 1146 88 0 0 chr6 137260174 137260322 -12256715 + B1_Mus1 SINE Alu 1 148 0 4 1632 5240 55 2 0 chr6 137260496 137261119 -12255918 - RLTR1 LTR ERV1 0 624 1 4 1632 978 285 32 92 chr6 137261377 137261779 -12255258 - MTD LTR MaLR -21 398 21 4 1632 328 118 0 29 chr6 137261898 137261968 -12255069 + (TTTTTG)n Simple_repeat Simple_repeat 2 69 0 4 1632 289 32 30 61 chr6 137261991 137262057 -12254980 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 4 1632 1562 218 26 24 chr6 137262058 137262438 -12254599 - MTB_Mm LTR MaLR -26 381 1 4 1632 433 296 12 90 chr6 137262586 137262753 -12254284 + RSINE1 SINE B4 2 155 -10 4 1632 281 89 22 0 chr6 137262760 137262805 -12254232 + (ATGGTG)n Simple_repeat Simple_repeat 4 49 0 4 1632 290 87 22 0 chr6 137262812 137262858 -12254179 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1632 25 0 0 0 chr6 137265564 137265589 -12251448 + AT_rich Low_complexity Low_complexity 1 25 0 4 1632 845 245 166 14 chr6 137267091 137267435 -12249602 - Lx9 LINE L1 -3 7641 7246 4 1632 204 241 0 0 chr6 137267719 137267773 -12249264 - MIRb SINE MIR -102 166 113 4 1632 358 299 44 7 chr6 137267911 137268046 -12248991 - MLT1A0 LTR MaLR -11 363 224 4 1632 915 152 0 0 chr6 137268071 137268235 -12248802 + CT-rich Low_complexity Low_complexity 3 166 0 4 1632 330 152 0 0 chr6 137268250 137268309 -12248728 + CT-rich Low_complexity Low_complexity 2 60 0 4 1632 449 278 46 46 chr6 137268370 137268566 -12248471 - MLT1A0 LTR MaLR -166 199 4 4 1632 277 265 50 30 chr6 137269039 137269140 -12247897 + B4 SINE B4 2 104 -188 4 1632 447 78 26 13 chr6 137269241 137269319 -12247718 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 4 1632 297 246 0 0 chr6 137269327 137269392 -12247645 + MTEb LTR MaLR 315 379 0 4 1632 253 320 7 74 chr6 137269640 137269775 -12247262 - ID_B1 SINE B4 0 224 99 4 1632 370 284 28 14 chr6 137269875 137270018 -12247019 + (CATA)n Simple_repeat Simple_repeat 4 148 0 4 1632 502 289 12 35 chr6 137270541 137270713 -12246324 + B3A SINE B2 31 198 0 4 1632 312 317 126 11 chr6 137271039 137271230 -12245807 + MLT2B1 LTR ERVL 7 219 -301 4 1632 561 88 0 0 chr6 137271271 137271351 -12245686 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 1632 839 118 106 177 chr6 137272554 137272791 -12244246 - URR1A DNA MER1_type 0 226 7 4 1632 1433 64 5 31 chr6 137272894 137273087 -12243950 - B2_Mm2 SINE B2 -6 189 2 4 1632 553 111 0 29 chr6 137274807 137274909 -12242128 + (TTCCC)n Simple_repeat Simple_repeat 2 100 0 4 1632 246 167 42 0 chr6 137275475 137275523 -12241514 + ID4_ SINE ID 2 51 -32 4 1632 351 110 16 78 chr6 137275534 137275662 -12241375 + (CAGAGA)n Simple_repeat Simple_repeat 2 121 0 4 1632 25 51 0 0 chr6 137275919 137275958 -12241079 + AT_rich Low_complexity Low_complexity 1 39 0 4 1632 429 20 0 0 chr6 137275964 137276014 -12241023 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1632 363 70 4 4 chr6 137276997 137277060 -12239977 + RMER17C LTR ERVK 9 56 -354 4 1632 561 243 64 32 chr6 137277286 137277443 -12239594 - RSINE1 SINE B4 0 165 4 4 1632 279 253 38 12 chr6 137277970 137278050 -12238987 + MER5A1 DNA MER1_type 68 149 -17 4 1632 962 201 39 0 chr6 137278575 137278754 -12238283 - B3 SINE B2 -25 191 6 4 1632 239 254 0 0 chr6 137278762 137278817 -12238220 - Charlie10b DNA MER1_type -149 93 39 4 1632 780 284 44 8 chr6 137279919 137280171 -12236866 + B4A SINE B4 9 269 -23 4 1632 443 100 14 0 chr6 137280172 137280242 -12236795 + (CA)n Simple_repeat Simple_repeat 1 71 0 4 1632 198 0 0 0 chr6 137280902 137280924 -12236113 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 4 1632 283 256 116 0 chr6 137280969 137281055 -12235982 - ORR1E LTR MaLR -1 378 269 4 1632 207 0 0 0 chr6 137281199 137281222 -12235815 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 4 1632 4783 158 44 24 chr6 137281298 137282140 -12234897 - Lx5 LINE L1 -3 7047 6189 4 1632 504 0 0 0 chr6 137282378 137282434 -12234603 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 1632 225 0 0 0 chr6 137282434 137282458 -12234579 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1632 412 284 113 52 chr6 137282619 137282849 -12234188 - Lx8 LINE L1 -5 7468 7225 4 1632 705 24 0 0 chr6 137283999 137284082 -12232955 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 4 1632 1035 116 0 0 chr6 137284099 137284245 -12232792 - B1_Mus1 SINE Alu 0 148 3 4 1632 219 69 0 0 chr6 137284565 137284594 -12232443 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 4 1632 744 94 0 0 chr6 137285375 137285481 -12231556 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 4 1632 242 319 29 0 chr6 137285516 137285585 -12231452 + B4A SINE B4 1 71 -221 4 1632 1043 112 6 0 chr6 137285611 137285781 -12231256 + (CA)n Simple_repeat Simple_repeat 2 172 0 4 1632 941 254 102 3 chr6 137285897 137286240 -12230797 - MTEa LTR MaLR 0 379 3 4 1632 2239 305 70 54 chr6 137290454 137290908 -12226129 + Lx8 LINE L1 6241 6688 -785 4 1632 440 254 18 0 chr6 137290908 137291022 -12226015 + PB1D9 SINE Alu 4 119 -1 4 1632 2239 305 70 54 chr6 137291022 137291781 -12225256 + Lx8 LINE L1 6689 7473 0 4 1632 225 0 0 0 chr6 137292224 137292249 -12224788 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1632 257 330 97 0 chr6 137292579 137292682 -12224355 + PB1D10 SINE Alu 5 117 0 4 1632 296 269 67 9 chr6 137292802 137292907 -12224130 + MLT1A1 LTR MaLR 19 129 -279 4 1632 630 0 0 0 chr6 137292914 137292984 -12224053 + (TC)n Simple_repeat Simple_repeat 2 71 0 4 1632 430 83 14 14 chr6 137293067 137293140 -12223897 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1632 539 298 80 44 chr6 137293152 137293426 -12223611 - B4A SINE B4 -6 286 3 4 1632 423 284 118 33 chr6 137293572 137293783 -12223254 - RMER15 LTR ERVL -14 561 333 4 1632 287 256 13 16 chr6 137294431 137294529 -12222508 + MLT1A1 LTR MaLR 265 404 -4 4 1632 248 234 113 31 chr6 137294746 137294843 -12222194 + L1ME4a LINE L1 6005 6109 -15 4 1632 629 308 29 24 chr6 137295743 137295989 -12221048 - B4A SINE B4 -18 274 28 4 1632 1214 35 0 0 chr6 137296758 137296901 -12220136 + B1_Mus2 SINE Alu 5 147 0 4 1632 733 280 51 45 chr6 137297291 137297605 -12219432 - MTE2a LTR MaLR 0 379 64 4 1632 222 289 44 59 chr6 137298225 137298361 -12218676 + B3 SINE B2 48 181 -35 4 1632 444 37 0 0 chr6 137298441 137298495 -12218542 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1632 24 0 0 0 chr6 137298586 137298610 -12218427 + AT_rich Low_complexity Low_complexity 1 24 0 4 1632 237 277 77 0 chr6 137298613 137298678 -12218359 - ID2 SINE ID 0 83 14 4 1632 671 309 34 46 chr6 137298939 137299265 -12217772 + L1M2 LINE L1 5497 5818 -494 4 1632 465 287 15 0 chr6 137299538 137299674 -12217363 + B1F SINE Alu 6 143 -6 4 1632 345 100 0 0 chr6 137299996 137300046 -12216991 + (TATG)n Simple_repeat Simple_repeat 3 52 0 4 1632 390 191 35 56 chr6 137300046 137300190 -12216847 - Lx9 LINE L1 -26 7618 7478 4 1632 256 261 14 0 chr6 137300195 137300264 -12216773 - Lx9 LINE L1 -373 7271 7202 4 1632 586 243 32 32 chr6 137300247 137300404 -12216633 + Lx9 LINE L1 7072 7228 -416 4 1632 8069 45 2 2 chr6 137300604 137301570 -12215467 - L1Md_F2 LINE L1 0 6582 5617 4 1632 331 305 160 26 chr6 137301574 137302082 -12214955 - L1M3de LINE L1 -4661 1992 1413 4 1632 209 213 0 0 chr6 137302840 137302887 -12214150 + A-rich Low_complexity Low_complexity 2 48 0 4 1632 198 0 0 0 chr6 137303982 137304004 -12213033 + (TAA)n Simple_repeat Simple_repeat 2 23 0 4 1632 25 95 0 0 chr6 137305712 137305786 -12211251 + AT_rich Low_complexity Low_complexity 1 74 0 4 1632 1265 193 0 5 chr6 137307004 137307228 -12209809 + URR1A DNA MER1_type 4 226 0 4 1632 702 238 30 12 chr6 137307634 137307800 -12209237 - B3A SINE B2 -27 171 3 4 1632 710 163 7 106 chr6 137307830 137307981 -12209056 + B1_Mur3 SINE Alu 1 136 -13 4 1632 197 77 51 0 chr6 137308004 137308043 -12208994 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 1632 300 244 73 0 chr6 137308065 137308147 -12208890 + Lx8 LINE L1 6682 6769 -704 4 1632 197 365 14 0 chr6 137308154 137308228 -12208809 + L2 LINE L2 2359 2433 -986 4 1632 180 0 0 0 chr6 137309308 137309328 -12207709 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1632 729 293 59 68 chr6 137309413 137309559 -12207478 - Lx9 LINE L1 -209 7435 7282 4 1632 1208 41 7 0 chr6 137309559 137309705 -12207332 - B1_Mus1 SINE Alu -1 147 1 4 1632 729 293 59 68 chr6 137309705 137309895 -12207142 - Lx9 LINE L1 -363 7281 7102 4 1632 1274 230 78 9 chr6 137309892 137310212 -12206825 + Lx9 LINE L1 6680 7021 -623 4 1632 363 273 108 9 chr6 137311226 137311337 -12205700 + RSINE1 SINE B4 24 145 -20 4 1632 504 0 0 0 chr6 137311337 137311393 -12205644 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1632 236 139 23 0 chr6 137311459 137311502 -12205535 + RMER30 DNA MER1_type 8 51 -151 4 1632 256 296 43 17 chr6 137311926 137312043 -12204994 + MIRb SINE MIR 29 148 -120 4 1632 465 50 0 0 chr6 137312068 137312128 -12204909 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1632 326 342 26 0 chr6 137312769 137312886 -12204151 + Lx8 LINE L1 7166 7285 -188 4 1632 28 0 0 0 chr6 137313860 137313888 -12203149 + AT_rich Low_complexity Low_complexity 1 28 0 4 1632 378 0 0 0 chr6 137313936 137313978 -12203059 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1632 575 251 113 12 chr6 137315672 137315850 -12201187 - B3A SINE B2 -13 203 7 4 1632 618 39 0 0 chr6 137315873 137315950 -12201087 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1632 337 254 28 0 chr6 137315950 137316021 -12201016 - ID SINE ID -151 73 1 4 1632 217 200 0 0 chr6 137317260 137317295 -12199742 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1632 434 313 0 50 chr6 137318199 137318340 -12198697 + ID_B1 SINE B4 90 223 -1 4 1632 481 351 31 51 chr6 137318422 137318617 -12198420 - B4 SINE B4 -2 290 100 4 1632 638 76 0 19 chr6 137318645 137318752 -12198285 + (TCTCTG)n Simple_repeat Simple_repeat 6 110 0 4 1632 548 300 6 53 chr6 137318757 137318926 -12198111 - RSINE1 SINE B4 0 165 5 5 1632 25 0 0 0 chr6 137319766 137319791 -12197246 + AT_rich Low_complexity Low_complexity 1 25 0 5 1632 21 71 0 0 chr6 137320644 137320686 -12196351 + AT_rich Low_complexity Low_complexity 1 42 0 5 1632 274 276 56 33 chr6 137322343 137322523 -12194514 - Lx7 LINE L1 0 7696 7513 5 1632 582 278 52 19 chr6 137322530 137322743 -12194294 - Lx7 LINE L1 -387 7309 7090 5 1632 481 237 8 78 chr6 137323219 137323347 -12193690 - ID_B1 SINE B4 -28 196 78 5 1632 1122 105 0 0 chr6 137323850 137324022 -12193015 + (CATA)n Simple_repeat Simple_repeat 4 175 0 5 1632 309 26 0 0 chr6 137324329 137324367 -12192670 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1632 245 260 21 10 chr6 137324368 137324465 -12192572 + (TCTG)n Simple_repeat Simple_repeat 4 101 0 5 1632 194 62 0 30 chr6 137324483 137324516 -12192521 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 5 1632 339 85 0 0 chr6 137324537 137324584 -12192453 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1632 36 23 0 0 chr6 137324662 137324705 -12192332 + AT_rich Low_complexity Low_complexity 1 43 0 5 1632 309 51 0 0 chr6 137325400 137325439 -12191598 + (TC)n Simple_repeat Simple_repeat 1 39 0 5 1632 212 240 20 0 chr6 137325442 137325492 -12191545 + C-rich Low_complexity Low_complexity 1 51 0 5 1632 204 158 0 0 chr6 137326740 137326778 -12190259 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1632 536 284 0 95 chr6 137328328 137328507 -12188530 + RSINE1 SINE B4 4 165 0 5 1632 264 154 0 0 chr6 137328507 137328559 -12188478 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1632 438 170 0 0 chr6 137329703 137329797 -12187240 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 1632 530 219 65 0 chr6 137329800 137329923 -12187114 - ID_B1 SINE B4 -7 217 87 5 1632 204 132 94 0 chr6 137329935 137329988 -12187049 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 5 1632 240 35 0 0 chr6 137330355 137330384 -12186653 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 5 1632 26 0 0 0 chr6 137330673 137330699 -12186338 + AT_rich Low_complexity Low_complexity 1 26 0 5 1632 4194 119 86 17 chr6 137332141 137332514 -12184523 - RMER6A LTR ERVK 0 756 378 5 1632 414 0 0 0 chr6 137332514 137332560 -12184477 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1632 4194 119 86 17 chr6 137332560 137332834 -12184203 - RMER6A LTR ERVK -379 377 62 5 1632 195 42 0 0 chr6 137332834 137332858 -12184179 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5 1632 4194 119 86 17 chr6 137332858 137332916 -12184121 - RMER6A LTR ERVK -695 61 2 5 1632 813 252 22 62 chr6 137333187 137333411 -12183626 - ID_B1 SINE B4 -8 216 2 5 1632 417 20 0 0 chr6 137333967 137334017 -12183020 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1632 356 138 76 54 chr6 137334022 137334114 -12182923 - RMER10A LTR ERVL -27 415 322 5 1632 363 44 0 0 chr6 137334566 137334611 -12182426 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1632 41 21 0 0 chr6 137335474 137335522 -12181515 + AT_rich Low_complexity Low_complexity 1 48 0 5 1632 783 0 0 0 chr6 137335734 137335821 -12181216 + (TG)n Simple_repeat Simple_repeat 1 87 0 5 1632 489 92 0 0 chr6 137336402 137336478 -12180559 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1632 331 264 21 21 chr6 137336537 137336630 -12180407 + B4A SINE B4 3 95 -197 5 1632 291 275 47 70 chr6 137336630 137336709 -12180328 + B2_Mm2 SINE B2 3 170 -25 5 1632 366 23 0 0 chr6 137338052 137338095 -12178942 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1632 790 194 31 67 chr6 137338095 137338288 -12178749 - B3 SINE B2 -30 186 1 5 1632 195 274 32 0 chr6 137338299 137338361 -12178676 + MIR SINE MIR 119 182 -80 5 1632 28 0 0 0 chr6 137338831 137338859 -12178178 + AT_rich Low_complexity Low_complexity 1 28 0 5 1632 247 265 29 14 chr6 137338955 137339024 -12178013 - B1_Mur2 SINE Alu -49 100 31 5 1632 331 299 56 35 chr6 137339332 137339474 -12177563 - B1_Mus2 SINE Alu 0 147 3 5 1632 402 290 8 24 chr6 137339348 137339475 -12177562 - ID_B1 SINE B4 -17 207 83 5 1632 607 279 121 0 chr6 137340121 137340336 -12176701 + B4A SINE B4 40 280 -12 5 1632 244 294 129 61 chr6 137340644 137340807 -12176230 + MIR3 SINE MIR 29 202 -6 5 1632 563 298 37 86 chr6 137341477 137341745 -12175292 - MER2 DNA MER2_type -5 340 86 5 1632 216 275 46 56 chr6 137342436 137342544 -12174493 - PB1D9 SINE Alu -2 118 12 5 1632 244 218 83 90 chr6 137344195 137344351 -12172686 + B2_Mm2 SINE B2 40 194 -1 5 1632 634 262 24 82 chr6 137344987 137345195 -12171842 + B3A SINE B2 1 196 -2 5 1632 251 236 0 0 chr6 137345520 137345575 -12171462 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1632 425 244 37 6 chr6 137345745 137345854 -12171183 + PB1 SINE Alu 14 124 -3 5 1632 871 159 35 0 chr6 137347717 137347862 -12169175 - B1_Mur4 SINE Alu 0 150 1 5 1632 353 267 44 0 chr6 137348283 137348373 -12168664 + ID_B1 SINE B4 114 207 -17 5 1632 1360 82 5 5 chr6 137349740 137349925 -12167112 - B2_Mm1a SINE B2 -7 186 2 5 1632 599 284 34 17 chr6 137350095 137350274 -12166763 + B3A SINE B2 1 182 -16 5 1632 455 280 38 0 chr6 137351153 137351285 -12165752 + RSINE1 SINE B4 3 139 -26 5 1632 561 205 61 38 chr6 137351705 137351837 -12165200 + RSINE1 SINE B4 31 165 0 5 1632 366 237 11 38 chr6 137351837 137352021 -12165016 + (CATA)n Simple_repeat Simple_repeat 1 179 0 5 1632 204 284 27 13 chr6 137352022 137352097 -12164940 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1632 729 226 0 0 chr6 137352100 137352277 -12164760 + (CATA)n Simple_repeat Simple_repeat 2 178 0 5 1632 237 328 56 39 chr6 137352403 137352581 -12164456 - L2 LINE L2 -702 2717 2537 5 1632 617 270 68 34 chr6 137353421 137353589 -12163448 - L1M2 LINE L1 -1280 4863 4691 5 1632 342 0 0 0 chr6 137353589 137353627 -12163410 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 1632 617 270 68 34 chr6 137353627 137353692 -12163345 - L1M2 LINE L1 -1453 4690 4622 5 1632 389 20 20 0 chr6 137353696 137353746 -12163291 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 1632 653 301 48 0 chr6 137353986 137354195 -12162842 - ID_B1 SINE B4 -3 221 3 5 1632 180 0 0 0 chr6 137354601 137354621 -12162416 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1632 825 250 43 0 chr6 137354626 137354810 -12162227 - B3 SINE B2 -24 192 1 5 1632 3804 164 81 62 chr6 137355308 137356193 -12160844 - RMER19B LTR ERVK 0 902 1 5 1632 372 222 0 0 chr6 137356567 137356639 -12160398 + B1F SINE Alu 16 87 -62 5 1632 797 244 153 29 chr6 137357047 137357288 -12159749 - B4A SINE B4 0 292 22 5 1632 225 0 0 0 chr6 137357298 137357323 -12159714 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1632 252 304 23 39 chr6 137357331 137357344 -12159693 + YREP_Mm Unknown Unknown 173 246 -1566 5 1632 439 300 18 0 chr6 137357344 137357454 -12159583 - ID_B1 SINE B4 -7 217 106 5 1632 233 365 42 0 chr6 137357381 137357477 -12159560 - PB1D10 SINE Alu -16 101 2 5 1632 1059 36 0 0 chr6 137358639 137358777 -12158260 - B1_Mus1 SINE Alu 0 148 11 5 1632 785 184 6 0 chr6 137358948 137359111 -12157926 + CT-rich Low_complexity Low_complexity 2 165 0 5 1632 405 0 0 0 chr6 137359422 137359467 -12157570 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1632 23 0 0 0 chr6 137359850 137359873 -12157164 + AT_rich Low_complexity Low_complexity 1 23 0 5 1632 279 0 0 0 chr6 137360116 137360147 -12156890 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 5 1632 797 164 11 17 chr6 137360147 137360327 -12156710 + GA-rich Low_complexity Low_complexity 2 180 0 5 1632 267 61 0 0 chr6 137360327 137360360 -12156677 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1632 432 0 0 0 chr6 137360909 137360957 -12156080 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1632 336 323 186 9 chr6 137361092 137361426 -12155611 + L1M5 LINE L1 5260 5652 -472 5 1632 420 20 0 0 chr6 137361456 137361505 -12155532 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1632 180 77 0 0 chr6 137361507 137361533 -12155504 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 5 1632 1199 246 56 0 chr6 137361553 137361858 -12155179 - MTE2b LTR MaLR 0 379 58 5 1632 686 273 27 16 chr6 137362142 137362328 -12154709 + B3 SINE B2 1 188 -28 5 1632 870 205 28 42 chr6 137363162 137363376 -12153661 - B3 SINE B2 -2 214 4 5 1633 223 227 50 111 chr6 137364031 137364130 -12152907 - B1F1 SINE Alu -10 139 47 5 1633 247 293 0 51 chr6 137364136 137364215 -12152822 - B1F1 SINE Alu -74 75 1 5 1633 407 265 60 0 chr6 137364463 137364580 -12152457 - B1F SINE Alu -8 141 18 5 1633 338 61 20 0 chr6 137365506 137365555 -12151482 + (ATG)n Simple_repeat Simple_repeat 1 50 0 5 1633 281 267 0 0 chr6 137365555 137365615 -12151422 - ID4_ SINE ID -22 61 2 5 1633 1678 163 183 18 chr6 137365773 137366111 -12150926 - ORR1B1 LTR MaLR 0 394 1 5 1633 601 238 62 39 chr6 137369466 137369645 -12147392 + B3A SINE B2 16 198 0 5 1633 309 135 0 0 chr6 137369947 137369999 -12147038 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1633 345 24 0 0 chr6 137370129 137370171 -12146866 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1633 705 12 0 0 chr6 137370171 137370252 -12146785 + (GA)n Simple_repeat Simple_repeat 1 82 0 5 1633 270 0 0 0 chr6 137371940 137371970 -12145067 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1633 441 0 0 0 chr6 137371970 137372018 -12145019 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 1633 185 252 8 25 chr6 137373212 137373334 -12143703 + (TG)n Simple_repeat Simple_repeat 1 120 0 5 1633 229 155 17 17 chr6 137373367 137373426 -12143611 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1633 482 257 41 20 chr6 137373466 137373613 -12143424 - RSINE1 SINE B4 -1 164 15 5 1633 345 174 34 34 chr6 137373838 137374016 -12143021 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1633 45 0 0 0 chr6 137375181 137375226 -12141811 + AT_rich Low_complexity Low_complexity 1 45 0 5 1633 624 281 141 35 chr6 137375392 137375490 -12141547 - MTD LTR MaLR -14 405 295 6 1633 697 176 6 81 chr6 137375490 137375651 -12141386 + B1_Mur2 SINE Alu 1 149 0 6 1633 624 281 141 35 chr6 137375651 137375899 -12141138 - MTD LTR MaLR -125 294 23 6 1633 183 100 0 0 chr6 137377028 137377058 -12139979 + (TCTCC)n Simple_repeat Simple_repeat 3 32 0 6 1633 2395 164 54 31 chr6 137377149 137377550 -12139487 - RLTR11A2 LTR ERVK 0 527 117 6 1633 2315 108 9 0 chr6 137377550 137377873 -12139164 - ORR1A3 LTR MaLR 0 326 1 6 1633 2395 164 54 31 chr6 137377873 137377986 -12139051 - RLTR11A2 LTR ERVK -411 116 1 6 1633 534 103 0 0 chr6 137380298 137380376 -12136661 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 1633 479 305 21 0 chr6 137380381 137380522 -12136515 - RSINE1 SINE B4 -18 147 4 6 1633 24 0 0 0 chr6 137380741 137380765 -12136272 + AT_rich Low_complexity Low_complexity 1 24 0 6 1633 449 243 127 23 chr6 137380968 137381141 -12135896 - ORR1E LTR MaLR -168 191 1 6 1633 227 259 16 65 chr6 137381845 137381907 -12135130 + MIR3 SINE MIR 108 166 -42 6 1633 788 277 92 63 chr6 137382120 137382502 -12134535 - MLT2D LTR ERVL -8 406 14 6 1633 335 321 21 28 chr6 137383869 137384013 -12133024 + MLT1C LTR MaLR 288 430 -37 6 1633 7101 55 1 21 chr6 137384013 137385194 -12131843 + L1Md_Gf LINE L1 271 1531 -4355 6 1633 383 290 61 18 chr6 137385706 137385871 -12131166 + MLT1B LTR MaLR 201 372 -18 6 1633 186 171 0 0 chr6 137385872 137385913 -12131124 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1633 462 18 0 0 chr6 137387305 137387360 -12129677 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1633 396 329 94 21 chr6 137387986 137388219 -12128818 + B4A SINE B4 43 292 0 6 1633 465 66 0 0 chr6 137388364 137388425 -12128612 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1633 689 197 204 14 chr6 137389903 137390114 -12126923 + Lx9 LINE L1 7309 7559 -85 6 1633 22 56 0 0 chr6 137390608 137390644 -12126393 + AT_rich Low_complexity Low_complexity 1 36 0 6 1633 27 0 0 0 chr6 137390964 137390991 -12126046 + AT_rich Low_complexity Low_complexity 1 27 0 6 1633 1012 54 0 0 chr6 137390991 137391120 -12125917 - B1_Mus1 SINE Alu -18 130 2 6 1633 340 238 39 19 chr6 137391120 137391167 -12125870 - ORR1B1-int LTR MaLR -862 647 598 6 1633 1223 163 51 0 chr6 137391410 137391625 -12125412 - URR1A DNA MER1_type 0 226 1 6 1633 769 248 154 68 chr6 137393276 137393826 -12123211 - RMER13A LTR ERVK -320 638 2 6 1633 231 301 30 61 chr6 137394020 137394119 -12122918 + MER58B DNA MER1_type 1 96 -245 6 1633 309 279 26 35 chr6 137394248 137394363 -12122674 + PB1D10 SINE Alu 4 117 0 6 1633 333 173 83 36 chr6 137394396 137394480 -12122557 + MER58B DNA MER1_type 143 230 -111 6 1633 180 0 0 0 chr6 137394680 137394700 -12122337 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1633 369 0 0 0 chr6 137394700 137394741 -12122296 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 6 1633 195 42 0 0 chr6 137394741 137394764 -12122273 + (CCGG)n Simple_repeat Simple_repeat 1 24 0 6 1633 3532 23 2 0 chr6 137394908 137395303 -12121734 - MTA_Mm LTR MaLR 0 396 1 6 1633 360 198 67 29 chr6 137398687 137398791 -12118246 - MTEb LTR MaLR -151 228 121 6 1633 26 0 0 0 chr6 137398919 137398945 -12118092 + AT_rich Low_complexity Low_complexity 1 26 0 6 1633 732 230 0 13 chr6 137399035 137399185 -12117852 - B1F SINE Alu -1 148 1 6 1633 3451 38 0 2 chr6 137399315 137399712 -12117325 - MTA_Mm LTR MaLR 0 396 1 6 1633 8915 42 11 2 chr6 137399712 137400800 -12116237 - MTA_Mm-int LTR MaLR 0 1098 1 6 1633 3393 38 2 0 chr6 137400800 137401195 -12115842 - MTA_Mm LTR MaLR 0 396 1 6 1633 369 0 0 0 chr6 137401707 137401748 -12115289 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1633 249 333 18 18 chr6 137401759 137401872 -12115165 + (TATG)n Simple_repeat Simple_repeat 3 115 0 6 1633 210 71 0 0 chr6 137402224 137402252 -12114785 + (TTC)n Simple_repeat Simple_repeat 3 30 0 6 1633 417 66 0 0 chr6 137402693 137402754 -12114283 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 6 1633 1056 146 121 5 chr6 137403763 137403962 -12113075 + URR1A DNA MER1_type 5 226 0 6 1633 959 338 58 39 chr6 137404599 137405168 -12111869 + Lx8 LINE L1 6843 7422 -51 6 1633 1336 160 5 5 chr6 137405293 137405513 -12111524 + URR1B DNA MER1_type 2 221 -4 6 1633 184 187 60 107 chr6 137405879 137405963 -12111074 + L2 LINE L2 1969 2048 -1371 6 1633 360 288 45 0 chr6 137405978 137406089 -12110948 - CR1_Mam LINE CR1 -1253 951 836 6 1633 188 238 43 44 chr6 137406603 137406710 -12110327 + MIRc SINE MIR 84 185 -91 6 1633 695 87 10 0 chr6 137407883 137407987 -12109050 + (CA)n Simple_repeat Simple_repeat 2 106 0 6 1633 2357 105 0 58 chr6 137408021 137408385 -12108652 - ORR1A1 LTR MaLR -3 343 1 6 1633 265 241 132 79 chr6 137409399 137409588 -12107449 + L1MA9 LINE L1 6114 6312 0 6 1633 955 296 7 43 chr6 137409625 137409904 -12107133 + B4A SINE B4 24 292 0 6 1633 231 114 0 0 chr6 137411873 137411908 -12105129 + (GGA)n Simple_repeat Simple_repeat 3 37 0 6 1633 651 219 73 73 chr6 137412067 137412259 -12104778 - B3A SINE B2 0 198 7 6 1633 190 368 81 0 chr6 137413848 137413935 -12103102 + L3 LINE CR1 4141 4234 -255 6 1633 467 329 66 69 chr6 137415069 137415389 -12101648 - RLTR26 LTR ERVK -227 415 97 6 1633 209 340 49 20 chr6 137415453 137415555 -12101482 - MIRb SINE MIR -161 107 3 6 1633 294 143 0 0 chr6 137415657 137415706 -12101331 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 6 1633 1008 0 0 0 chr6 137415706 137415818 -12101219 + (TAGA)n Simple_repeat Simple_repeat 4 115 0 6 1633 1730 180 21 46 chr6 137415955 137416408 -12100629 - RMER17C LTR ERVK -519 439 16 6 1633 1017 269 81 22 chr6 137416563 137416886 -12100151 - ORR1E LTR MaLR -16 343 2 6 1633 798 262 5 21 chr6 137418120 137418311 -12098726 + B3A SINE B2 2 189 -9 6 1633 731 258 175 10 chr6 137418680 137418989 -12098048 - MLT1A0 LTR MaLR -2 363 4 6 1633 180 0 0 0 chr6 137419128 137419148 -12097889 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1633 523 286 124 30 chr6 137419429 137419631 -12097406 + ID_B1 SINE B4 3 223 -1 6 1633 279 220 138 41 chr6 137419759 137419882 -12097155 + MIRb SINE MIR 98 232 -36 6 1633 1160 49 21 0 chr6 137420371 137420515 -12096522 + B1_Mus1 SINE Alu 1 147 -1 6 1633 1099 277 75 55 chr6 137421187 137421534 -12095503 + MTEa LTR MaLR 1 354 -25 6 1633 1012 206 151 66 chr6 137421515 137421847 -12095190 - ORR1D2 LTR MaLR -5 365 6 6 1633 241 250 0 32 chr6 137421835 137421897 -12095140 + MTEa LTR MaLR 318 377 -2 6 1633 513 263 83 0 chr6 137422073 137422206 -12094831 + B1F SINE Alu 1 144 -5 6 1633 495 0 0 0 chr6 137422529 137422584 -12094453 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1633 703 179 0 11 chr6 137422584 137422765 -12094272 + GA-rich Low_complexity Low_complexity 2 180 0 6 1633 226 233 0 0 chr6 137423821 137423864 -12093173 + RLTR13D3 LTR ERVK 1 43 -1071 6 1633 21 82 0 0 chr6 137424229 137424278 -12092759 + AT_rich Low_complexity Low_complexity 1 49 0 6 1633 1514 197 58 85 chr6 137424333 137424819 -12092218 + RLTR1B LTR ERV1 1 512 0 6 1633 724 200 24 0 chr6 137427215 137427340 -12089697 - RSINE1 SINE B4 -35 130 3 6 1633 355 344 98 94 chr6 137428030 137428124 -12088913 - B4A SINE B4 0 292 203 6 1633 600 255 21 0 chr6 137428124 137428265 -12088772 - B1_Mur1 SINE Alu -5 144 1 6 1633 355 344 98 94 chr6 137428265 137428456 -12088581 - B4A SINE B4 -90 202 6 6 1633 1563 36 0 67 chr6 137429335 137429544 -12087493 + B2_Mm2 SINE B2 1 195 0 6 1633 377 290 63 101 chr6 137429595 137429802 -12087235 - B3 SINE B2 -16 200 2 6 1633 536 265 32 45 chr6 137429887 137430041 -12086996 - ID_B1 SINE B4 0 224 73 6 1633 207 0 0 0 chr6 137430085 137430108 -12086929 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1633 387 41 0 0 chr6 137430134 137430183 -12086854 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1633 1315 39 11 0 chr6 137430951 137431129 -12085908 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 6 1633 541 168 0 196 chr6 137431167 137431330 -12085707 - ID_B1 SINE B4 0 224 94 6 1633 278 319 54 68 chr6 137432780 137432928 -12084109 + L2 LINE L2 1406 1551 -1868 6 1633 207 309 130 33 chr6 137433061 137433245 -12083792 + L2 LINE L2 2489 2690 -729 6 1633 390 171 32 16 chr6 137434280 137434405 -12082632 + (TA)n Simple_repeat Simple_repeat 2 128 0 6 1633 633 27 0 0 chr6 137435208 137435283 -12081754 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1633 653 204 191 6 chr6 137435342 137435510 -12081527 - B4A SINE B4 -85 207 9 6 1633 198 0 0 0 chr6 137435742 137435764 -12081273 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1633 201 74 0 0 chr6 137436433 137436460 -12080577 + (CTTA)n Simple_repeat Simple_repeat 1 27 0 6 1633 1038 60 0 0 chr6 137436470 137436604 -12080433 + (TG)n Simple_repeat Simple_repeat 2 135 0 6 1633 536 276 35 0 chr6 137436606 137436722 -12080315 - RSINE1 SINE B4 -44 121 2 6 1633 2430 181 100 4 chr6 137436981 137437463 -12079574 + RLTR11A LTR ERVK 1 528 0 6 1633 241 245 19 0 chr6 137439651 137439704 -12077333 + ID4 SINE ID 4 57 -26 6 1633 281 254 0 27 chr6 137439730 137439803 -12077234 + G-rich Low_complexity Low_complexity 1 71 0 6 1633 361 205 8 8 chr6 137443641 137443764 -12073273 + (CA)n Simple_repeat Simple_repeat 2 124 0 6 1633 3403 35 2 2 chr6 137444312 137444708 -12072329 + MTA_Mm LTR MaLR 1 396 0 6 1633 180 0 0 0 chr6 137445514 137445534 -12071503 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1633 1016 102 6 6 chr6 137445547 137445705 -12071332 - B2_Mm2 SINE B2 -19 176 19 6 1633 264 326 0 22 chr6 137445755 137445846 -12071191 + G-rich Low_complexity Low_complexity 6 94 0 6 1633 257 167 19 0 chr6 137446084 137446138 -12070899 + G-rich Low_complexity Low_complexity 1 55 0 6 1633 183 42 0 0 chr6 137446368 137446392 -12070645 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1633 612 0 0 0 chr6 137446986 137447054 -12069983 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1633 516 286 0 8 chr6 137447054 137447181 -12069856 - ID_B1 SINE B4 -13 211 86 7 1633 21 36 0 0 chr6 137448431 137448459 -12068578 + AT_rich Low_complexity Low_complexity 1 28 0 7 1633 443 259 71 7 chr6 137449358 137449498 -12067539 + B3 SINE B2 1 149 -67 7 1633 524 291 7 28 chr6 137449649 137449794 -12067243 + ID_B1 SINE B4 79 220 -4 7 1633 1455 57 17 0 chr6 137449960 137450136 -12066901 - B2_Mm2 SINE B2 -15 180 2 7 1633 25 0 0 0 chr6 137450793 137450818 -12066219 + AT_rich Low_complexity Low_complexity 1 25 0 7 1633 583 289 0 0 chr6 137450856 137450998 -12066039 - B1F SINE Alu -7 142 1 7 1633 361 239 33 0 chr6 137451808 137451900 -12065137 - B1F1 SINE Alu 0 149 55 7 1633 452 295 85 32 chr6 137452318 137452577 -12064460 - B4 SINE B4 -14 278 6 7 1633 22 0 0 0 chr6 137452582 137452604 -12064433 + AT_rich Low_complexity Low_complexity 1 22 0 7 1633 342 239 54 0 chr6 137452737 137452829 -12064208 - PB1D10 SINE Alu -7 110 14 7 1633 510 272 31 25 chr6 137452755 137452917 -12064120 - ID_B1 SINE B4 -54 170 8 7 1633 211 290 104 8 chr6 137453129 137453254 -12063783 - B1F SINE Alu -12 137 1 7 1633 180 111 0 0 chr6 137455084 137455111 -12061926 + (TATG)n Simple_repeat Simple_repeat 2 28 0 7 1633 231 316 10 30 chr6 137456335 137456436 -12060601 - B1_Mur3 SINE Alu -50 99 1 7 1633 486 274 6 50 chr6 137456436 137456527 -12060510 - B4A SINE B4 -207 85 2 7 1633 182 156 15 45 chr6 137457182 137457249 -12059788 + GA-rich Low_complexity Low_complexity 4 68 0 7 1633 708 219 129 0 chr6 137458902 137459080 -12057957 + B3 SINE B2 11 211 -5 7 1633 311 279 27 18 chr6 137460016 137460139 -12056898 + MIRb SINE MIR 42 169 -99 7 1633 180 0 0 0 chr6 137460175 137460195 -12056842 + (TG)n Simple_repeat Simple_repeat 2 21 0 7 1633 27 0 0 0 chr6 137460304 137460331 -12056706 + AT_rich Low_complexity Low_complexity 1 27 0 7 1633 759 188 12 48 chr6 137460346 137460514 -12056523 - RSINE1 SINE B4 -1 164 3 7 1633 227 202 33 11 chr6 137461275 137461365 -12055672 + GA-rich Low_complexity Low_complexity 4 95 0 7 1633 388 333 14 0 chr6 137462066 137462213 -12054824 - B1F SINE Alu 0 149 1 7 1633 391 245 29 19 chr6 137462246 137462350 -12054687 - PB1D10 SINE Alu -12 105 1 7 1633 215 31 31 0 chr6 137463777 137463809 -12053228 + (TTG)n Simple_repeat Simple_repeat 1 33 0 7 1633 471 134 117 67 chr6 137463809 137463929 -12053108 - B1_Mur3 SINE Alu 0 149 24 7 1633 377 235 128 0 chr6 137464228 137464330 -12052707 + ID_B1 SINE B4 101 215 -9 7 1633 326 241 56 22 chr6 137464856 137464945 -12052092 - PB1D7 SINE Alu -2 118 27 7 1633 189 171 0 0 chr6 137465557 137465592 -12051445 + (CCCG)n Simple_repeat Simple_repeat 3 37 0 7 1633 545 338 12 6 chr6 137466386 137466588 -12050449 + B3A SINE B2 7 203 -13 7 1633 437 129 11 0 chr6 137466591 137466684 -12050353 + (CA)n Simple_repeat Simple_repeat 2 95 0 7 1633 1206 87 63 11 chr6 137466704 137466878 -12050159 + B2_Mm2 SINE B2 3 185 -10 7 1633 251 268 0 14 chr6 137467476 137467548 -12049489 - B4 SINE B4 -220 72 2 7 1633 702 0 0 0 chr6 137467838 137467916 -12049121 + (TCC)n Simple_repeat Simple_repeat 1 78 0 7 1633 613 256 11 44 chr6 137468251 137468431 -12048606 - B4A SINE B4 -116 176 3 7 1633 421 238 98 0 chr6 137469113 137469235 -12047802 + B1F SINE Alu 4 137 -12 7 1633 261 0 0 0 chr6 137469847 137469876 -12047161 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1633 192 290 172 0 chr6 137470119 137470212 -12046825 - MIRc SINE MIR -112 156 48 7 1633 498 265 145 35 chr6 137470235 137470462 -12046575 + Lx8 LINE L1 6385 6636 -837 7 1633 1084 83 14 0 chr6 137471657 137471801 -12045236 - B1_Mus1 SINE Alu 0 148 3 7 1633 440 312 160 53 chr6 137472861 137473105 -12043932 - B4 SINE B4 -21 271 2 7 1633 640 252 0 0 chr6 137473771 137473902 -12043135 + RSINE1 SINE B4 3 133 -32 7 1633 654 206 210 22 chr6 137474397 137474621 -12042416 + ORR1D2 LTR MaLR 109 374 0 7 1633 215 242 97 0 chr6 137475135 137475197 -12041840 - B1F SINE Alu -71 78 11 7 1633 23 0 0 0 chr6 137475212 137475235 -12041802 + AT_rich Low_complexity Low_complexity 1 23 0 7 1633 385 278 46 0 chr6 137475389 137475497 -12041540 + B3A SINE B2 1 113 -85 7 1633 396 0 0 0 chr6 137475528 137475572 -12041465 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1633 346 291 8 86 chr6 137477484 137477612 -12039425 - B3A SINE B2 -77 121 4 7 1633 28 61 0 0 chr6 137478060 137478109 -12038928 + AT_rich Low_complexity Low_complexity 1 49 0 7 1633 573 15 0 0 chr6 137478428 137478494 -12038543 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1633 473 213 6 17 chr6 137478494 137478666 -12038371 + (TA)n Simple_repeat Simple_repeat 1 170 0 7 1633 222 196 0 0 chr6 137478998 137479044 -12037993 + (CACAG)n Simple_repeat Simple_repeat 4 49 0 7 1633 222 118 0 0 chr6 137480545 137480579 -12036458 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1633 2514 157 47 20 chr6 137481006 137481495 -12035542 + RMER15 LTR ERVL 71 572 -3 7 1633 676 217 92 0 chr6 137481507 137481659 -12035378 - B3 SINE B2 -49 167 2 7 1633 359 306 9 0 chr6 137481857 137481965 -12035072 - RSINE1 SINE B4 -43 122 14 7 1633 210 284 45 81 chr6 137482097 137482208 -12034829 - L2a LINE L2 -4 3422 3316 7 1633 1589 296 146 10 chr6 137482589 137483746 -12033291 - L1M2 LINE L1 -1198 4945 3495 7 1633 243 157 0 0 chr6 137483785 137483836 -12033201 + CT-rich Low_complexity Low_complexity 1 51 0 7 1633 345 75 0 0 chr6 137483844 137483897 -12033140 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1633 1153 326 82 19 chr6 137484352 137484946 -12032091 + Lx8 LINE L1 6840 7471 -2 7 1633 300 292 21 0 chr6 137485342 137485438 -12031599 - MIR SINE MIR -128 134 37 7 1633 679 255 21 5 chr6 137485610 137485799 -12031238 + ID_B1 SINE B4 2 193 -31 7 1633 260 328 97 0 chr6 137487652 137487786 -12029251 + B1F SINE Alu 1 147 -2 7 1633 397 225 22 33 chr6 137488738 137488830 -12028207 + RSINE1 SINE B4 53 143 -22 7 1633 25 0 0 0 chr6 137488845 137488870 -12028167 + AT_rich Low_complexity Low_complexity 1 25 0 7 1633 275 296 270 15 chr6 137490453 137490663 -12026374 + B4 SINE B4 29 291 -1 7 1633 208 62 125 0 chr6 137492309 137492357 -12024680 + (GTTTG)n Simple_repeat Simple_repeat 3 56 0 7 1633 319 170 295 11 chr6 137492362 137492457 -12024580 - B1_Mur1 SINE Alu -22 127 6 7 1633 225 311 21 32 chr6 137492536 137492629 -12024408 + ID_B1 SINE B4 133 224 0 7 1633 261 262 25 12 chr6 137492549 137492630 -12024407 + B1F SINE Alu 68 149 0 7 1633 226 333 0 0 chr6 137492641 137492698 -12024339 + ID4_ SINE ID 2 58 -25 7 1633 240 264 87 43 chr6 137492739 137492854 -12024183 - L1MC3 LINE L1 -6 7779 7660 7 1633 3602 55 20 2 chr6 137492933 137493420 -12023617 + LTRIS2 LTR ERV1 69 564 0 7 1634 930 173 45 5 chr6 137495182 137495380 -12021657 - URR1A DNA MER1_type -5 221 16 7 1634 345 271 127 63 chr6 137495469 137495595 -12021442 - B1F SINE Alu -14 136 3 7 1634 531 0 0 0 chr6 137495730 137495789 -12021248 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 7 1634 1011 116 0 0 chr6 137495789 137495927 -12021110 - B1_Mus1 SINE Alu -10 138 1 7 1634 360 245 20 10 chr6 137496546 137496645 -12020392 + RSINE1 SINE B4 2 101 -64 7 1634 315 0 0 0 chr6 137496677 137496712 -12020325 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1634 290 26 26 0 chr6 137496857 137496896 -12020141 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1634 273 247 82 136 chr6 137497357 137497563 -12019474 + B3A SINE B2 3 197 -1 7 1634 494 247 90 13 chr6 137497576 137497732 -12019305 + B3A SINE B2 25 192 -6 7 1634 305 135 45 0 chr6 137497732 137497821 -12019216 + (CA)n Simple_repeat Simple_repeat 1 93 0 7 1634 201 39 0 0 chr6 137499175 137499201 -12017836 + (CTTG)n Simple_repeat Simple_repeat 4 29 0 7 1634 383 302 59 21 chr6 137499397 137499583 -12017454 + Lx8 LINE L1 6774 6966 -507 7 1634 228 163 0 23 chr6 137499859 137499903 -12017134 + CT-rich Low_complexity Low_complexity 3 45 0 7 1634 232 247 120 33 chr6 137499905 137499997 -12017040 + RMER12 LTR ERVK 750 849 -473 7 1634 413 278 0 0 chr6 137500003 137500093 -12016944 + B3A SINE B2 21 110 -88 1 1634 366 23 0 0 chr6 137500125 137500168 -12016869 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1634 255 291 35 0 chr6 137500375 137500461 -12016576 - MIRb SINE MIR -14 254 166 3 1634 23 33 0 0 chr6 137500501 137500531 -12016506 + AT_rich Low_complexity Low_complexity 1 30 0 4 1634 443 141 24 0 chr6 137500786 137500871 -12016166 - B3A SINE B2 -109 89 3 5 1634 431 269 67 2 chr6 137500901 137501036 -12016001 - B1F SINE Alu -6 143 1 6 1634 828 179 180 39 chr6 137501306 137501539 -12015498 + ORR1B2 LTR MaLR 102 367 0 7 1634 1291 236 47 3 chr6 137501614 137501912 -12015125 + MTEa LTR MaLR 31 341 -38 8 1634 708 232 43 37 chr6 137503060 137503248 -12013789 + B3 SINE B2 28 216 0 9 1634 579 112 0 0 chr6 137503457 137503546 -12013491 + (GGA)n Simple_repeat Simple_repeat 2 90 0 1 1634 1192 81 0 31 chr6 137504135 137504326 -12012711 - MusHAL1 LINE L1 -1765 947 763 1 1634 3918 79 15 15 chr6 137504328 137504867 -12012170 + L1_Mus4 LINE L1 6098 6636 0 1 1634 616 233 0 22 chr6 137504943 137505127 -12011910 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1634 675 237 0 0 chr6 137505089 137505266 -12011771 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 1634 254 281 72 66 chr6 137505288 137505530 -12011507 + MTEb LTR MaLR 86 335 -44 1 1634 188 32 97 0 chr6 137506491 137506522 -12010515 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1634 2495 89 3 3 chr6 137506564 137506891 -12010146 + ORR1A2 LTR MaLR 1 327 0 1 1634 347 271 0 0 chr6 137507041 137507126 -12009911 - B3A SINE B2 -108 90 6 1 1634 286 219 27 27 chr6 137507546 137507621 -12009416 - AmnSINE1 SINE SINE -413 162 88 1 1634 295 286 9 0 chr6 137507948 137508053 -12008984 + (TG)n Simple_repeat Simple_repeat 1 106 0 2 1634 353 352 55 0 chr6 137508069 137508197 -12008840 - B4 SINE B4 -106 186 52 2 1634 215 315 83 9 chr6 137508336 137508445 -12008592 - MIR SINE MIR -32 230 114 2 1634 522 0 0 0 chr6 137508622 137508680 -12008357 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 1634 534 318 77 0 chr6 137510446 137510641 -12006396 + B4A SINE B4 1 210 -82 2 1634 631 204 7 28 chr6 137510737 137510878 -12006159 + B1F SINE Alu 2 139 -10 2 1634 186 71 0 0 chr6 137510878 137510906 -12006131 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1634 1025 77 0 0 chr6 137511076 137511219 -12005818 - B1_Mus1 SINE Alu 0 148 6 2 1634 673 223 16 59 chr6 137512300 137512486 -12004551 - B3 SINE B2 -1 215 38 2 1634 246 62 0 0 chr6 137512597 137512629 -12004408 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 2 1634 492 189 114 48 chr6 137512645 137512812 -12004225 - B3 SINE B2 -31 185 8 3 1634 195 69 0 0 chr6 137512991 137513020 -12004017 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1634 498 175 43 17 chr6 137513388 137513504 -12003533 - PB1D7 SINE Alu -1 119 1 3 1634 194 245 20 0 chr6 137514229 137514278 -12002759 + MIR SINE MIR 61 110 -152 3 1634 371 235 15 22 chr6 137514289 137514403 -12002634 + MTEb LTR MaLR 248 362 -17 3 1634 312 224 0 127 chr6 137514871 137515060 -12001977 + (CATG)n Simple_repeat Simple_repeat 1 165 0 3 1634 231 36 0 0 chr6 137515635 137515663 -12001374 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1634 610 295 82 33 chr6 137515836 137515853 -12001184 - B4 SINE B4 -4 288 272 3 1634 342 0 0 0 chr6 137515853 137515891 -12001146 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1634 610 295 82 33 chr6 137515891 137516143 -12000894 - B4 SINE B4 -21 271 6 3 1634 767 182 45 34 chr6 137516619 137516795 -12000242 + B3A SINE B2 5 182 -16 3 1634 710 299 72 5 chr6 137516919 137517141 -11999896 + B4 SINE B4 15 251 -41 4 1634 189 0 0 0 chr6 137517162 137517183 -11999854 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1634 189 107 0 0 chr6 137517473 137517501 -11999536 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1634 714 325 98 4 chr6 137517902 137518158 -11998879 + B4A SINE B4 13 292 0 4 1634 384 111 0 0 chr6 137518179 137518242 -11998795 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1634 652 224 16 52 chr6 137519728 137519921 -11997116 + B3A SINE B2 4 189 -9 4 1634 353 222 11 22 chr6 137520267 137520359 -11996678 + B4A SINE B4 3 93 -199 4 1634 883 236 0 73 chr6 137520360 137520593 -11996444 + B3 SINE B2 1 216 0 4 1634 432 361 24 19 chr6 137520623 137520829 -11996208 + B4 SINE B4 84 290 -2 4 1634 461 195 316 0 chr6 137521424 137521580 -11995457 - B3 SINE B2 0 216 12 4 1634 4308 107 27 15 chr6 137521645 137522312 -11994725 + Lx3A LINE L1 6303 6977 -4 5 1634 767 314 83 36 chr6 137522718 137523105 -11993932 + LTR16A LTR ERVL 16 420 -31 5 1634 665 202 106 58 chr6 137523379 137523568 -11993469 + B3A SINE B2 1 198 0 5 1634 2157 72 61 26 chr6 137524463 137524775 -11992262 + ORR1A2 LTR MaLR 1 323 -4 5 1634 273 29 0 0 chr6 137526475 137526509 -11990528 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1634 574 226 153 112 chr6 137526512 137526761 -11990276 - B4A SINE B4 0 292 34 5 1634 288 114 0 0 chr6 137527350 137527394 -11989643 - B2_Mm2 SINE B2 -149 46 3 5 1634 1639 251 67 16 chr6 137528220 137528653 -11988384 + Lx6 LINE L1 6990 7444 -16 5 1634 720 180 11 25 chr6 137528750 137529035 -11988002 + (TG)n Simple_repeat Simple_repeat 1 281 0 5 1634 325 283 40 20 chr6 137529517 137529618 -11987419 + B3 SINE B2 2 104 -112 5 1634 312 27 0 0 chr6 137529671 137529708 -11987329 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1634 252 200 0 0 chr6 137529860 137529915 -11987122 + GA-rich Low_complexity Low_complexity 3 57 0 6 1634 658 252 0 14 chr6 137530407 137530552 -11986485 + ID_B1 SINE B4 81 223 -1 6 1634 198 0 0 0 chr6 137532485 137532507 -11984530 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 1634 424 296 74 13 chr6 137532998 137533227 -11983810 - L1MCa LINE L1 -5174 1334 1092 6 1634 249 83 0 0 chr6 137533384 137533420 -11983617 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1634 973 281 39 18 chr6 137533442 137533725 -11983312 - B4A SINE B4 -2 290 2 6 1634 284 299 48 7 chr6 137533735 137533880 -11983157 - L1MD LINE L1 -3228 2918 2768 6 1634 493 307 0 0 chr6 137533991 137534129 -11982908 + B1F2 SINE Alu 2 139 -10 6 1634 230 191 0 21 chr6 137534141 137534189 -11982848 + GA-rich Low_complexity Low_complexity 1 47 0 6 1634 526 93 23 0 chr6 137534251 137534337 -11982700 + (TC)n Simple_repeat Simple_repeat 1 88 0 7 1634 189 94 0 0 chr6 137535724 137535756 -11981281 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 7 1634 1067 324 81 2 chr6 137538436 137538878 -11978159 + Lx8 LINE L1 6990 7466 -7 7 1634 288 345 17 17 chr6 137538951 137539069 -11977968 + Lx8 LINE L1 7198 7315 -158 7 1634 570 270 35 122 chr6 137539293 137539786 -11977251 - RLTR11A LTR ERVK 0 453 39 7 1634 460 270 8 16 chr6 137539784 137539912 -11977125 - ID_B1 SINE B4 -78 146 20 7 1634 487 272 180 8 chr6 137540519 137540764 -11976273 + B4A SINE B4 1 287 -5 7 1634 218 285 32 26 chr6 137541310 137541445 -11975592 - MIR SINE MIR -39 229 89 7 1634 991 132 0 11 chr6 137542041 137542217 -11974820 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 7 1634 515 126 17 35 chr6 137542236 137542351 -11974686 + GA-rich Low_complexity Low_complexity 4 116 0 7 1634 298 202 123 25 chr6 137542830 137542911 -11974126 + PB1D10 SINE Alu 13 101 -16 8 1634 763 250 8 77 chr6 137543538 137543735 -11973302 - B3A SINE B2 -30 186 1 8 1634 860 239 78 115 chr6 137544539 137544922 -11972115 + MTD LTR MaLR 49 417 -2 8 1634 1042 241 118 29 chr6 137545938 137546284 -11970753 - Lx8 LINE L1 -18 7455 7079 8 1634 1174 309 59 38 chr6 137546502 137547030 -11970007 + MLT2B3 LTR ERVL 8 546 -8 8 1634 583 213 141 45 chr6 137547362 137547539 -11969498 + B3A SINE B2 1 194 -4 8 1634 2921 32 8 28 chr6 137547608 137547966 -11969071 + L1Md_F3 LINE L1 6212 6562 -22 8 1634 927 0 0 0 chr6 137547971 137548074 -11968963 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 8 1634 229 268 60 35 chr6 137549197 137549313 -11967724 - MIR SINE MIR -26 236 118 8 1634 260 154 0 19 chr6 137549475 137549528 -11967509 + G-rich Low_complexity Low_complexity 5 56 0 8 1634 792 258 74 16 chr6 137549534 137549790 -11967247 + B4A SINE B4 7 277 -15 9 1634 324 0 0 0 chr6 137549804 137549840 -11967197 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1634 3469 55 0 5 chr6 137549955 137550378 -11966659 - L1_Mus1 LINE L1 0 6567 6147 9 1634 385 173 149 28 chr6 137550888 137550995 -11966042 + B1F SINE Alu 2 121 -28 9 1634 192 239 11 33 chr6 137551067 137551158 -11965879 + GA-rich Low_complexity Low_complexity 1 89 0 9 1634 912 190 0 0 chr6 137551549 137551786 -11965251 + (TTG)n Simple_repeat Simple_repeat 1 237 0 9 1634 275 122 20 0 chr6 137551902 137551951 -11965086 + (CAA)n Simple_repeat Simple_repeat 2 51 0 9 1634 323 264 48 150 chr6 137552037 137552264 -11964773 + MTE2a LTR MaLR 9 212 -167 9 1634 370 200 72 21 chr6 137553236 137553333 -11963704 + ORR1D1 LTR MaLR 11 112 -262 9 1634 228 200 15 30 chr6 137553330 137553397 -11963640 + ORR1D1 LTR MaLR 39 104 -263 9 1634 1278 215 42 73 chr6 137553393 137553709 -11963328 + ORR1D1 LTR MaLR 65 374 0 9 1634 289 360 50 0 chr6 137553726 137553865 -11963172 + Lx8 LINE L1 6963 7108 -365 1 1634 402 115 0 0 chr6 137554083 137554144 -11962893 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 1 1634 860 274 39 11 chr6 137555399 137555679 -11961358 + B4A SINE B4 4 291 -1 1 1634 528 16 0 0 chr6 137555770 137555831 -11961206 + (CATA)n Simple_repeat Simple_repeat 3 63 0 1 1634 1233 250 49 43 chr6 137555944 137556203 -11960834 + ORR1E LTR MaLR 1 259 -100 1 1634 1987 94 88 66 chr6 137556203 137556523 -11960514 - ORR1A2 LTR MaLR 0 327 1 1 1634 1233 250 49 43 chr6 137556523 137556610 -11960427 + ORR1E LTR MaLR 260 349 -10 1 1634 294 29 0 0 chr6 137557405 137557440 -11959597 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1634 567 217 117 0 chr6 137557685 137557805 -11959232 + ID_B1 SINE B4 82 215 -9 1 1634 24 32 0 0 chr6 137557805 137557836 -11959201 + AT_rich Low_complexity Low_complexity 1 31 0 1 1634 562 120 0 0 chr6 137558192 137558284 -11958753 - Lx2 LINE L1 -1 6996 6905 1 1634 468 62 0 0 chr6 137558614 137558678 -11958359 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1634 1191 218 83 12 chr6 137558681 137559006 -11958031 - MTEb LTR MaLR -31 348 1 1 1634 523 250 81 25 chr6 137559452 137559612 -11957425 + B3 SINE B2 23 191 -25 1 1634 596 267 0 29 chr6 137561589 137561728 -11955309 + RSINE1 SINE B4 3 137 -28 1 1634 336 24 0 0 chr6 137561739 137561780 -11955257 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1634 551 81 12 0 chr6 137561790 137561876 -11955161 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 1 1634 967 237 14 5 chr6 137561877 137562089 -11954948 + B3 SINE B2 3 216 0 1 1634 543 308 0 0 chr6 137562122 137562252 -11954785 + ID_B1 SINE B4 95 224 0 1 1634 794 193 6 0 chr6 137562252 137562428 -11954609 + GA-rich Low_complexity Low_complexity 1 177 0 1 1634 392 371 22 22 chr6 137563074 137563300 -11953737 + MER2 DNA MER2_type 117 342 -3 1 1634 896 218 17 11 chr6 137563913 137564094 -11952943 + B3A SINE B2 2 183 -15 1 1634 246 270 0 0 chr6 137564116 137564190 -11952847 + Lx9 LINE L1 7383 7456 -188 1 1634 305 292 0 0 chr6 137564373 137564445 -11952592 + B4A SINE B4 214 285 -7 1 1634 563 342 0 0 chr6 137565284 137565486 -11951551 + MER3 DNA MER1_type 6 207 -2 1 1634 2417 112 3 0 chr6 137565646 137565977 -11951060 - Lx2 LINE L1 -505 6492 6161 1 1634 3544 78 4 11 chr6 137565977 137566455 -11950582 + Lx2 LINE L1 6522 6996 -1 1 1634 491 212 21 61 chr6 137566677 137566816 -11950221 - B1F1 SINE Alu -1 148 16 1 1634 8939 22 0 0 chr6 137567470 137568485 -11948552 + L1Md_T LINE L1 4572 5586 -297 1 1634 8155 56 0 0 chr6 137568485 137569481 -11947556 + L1Md_T LINE L1 5587 6582 0 1 1634 501 163 0 0 chr6 137570629 137570721 -11946316 + (TA)n Simple_repeat Simple_repeat 1 92 0 1 1634 390 42 0 0 chr6 137570710 137570758 -11946279 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1634 313 262 252 67 chr6 137570797 137570932 -11946105 + RSINE1 SINE B4 6 165 0 1 1634 249 180 0 0 chr6 137570932 137570982 -11946055 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1634 426 288 72 22 chr6 137571359 137571540 -11945497 + B3A SINE B2 1 190 -8 1 1634 315 0 0 0 chr6 137571559 137571594 -11945443 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1634 216 0 0 0 chr6 137571594 137571618 -11945419 + (TA)n Simple_repeat Simple_repeat 1 24 0 1 1634 881 284 115 51 chr6 137571734 137572090 -11944947 + MTE2a LTR MaLR 1 379 0 1 1634 437 267 17 0 chr6 137572926 137573042 -11943995 + ID_B1 SINE B4 99 216 -8 1 1634 236 164 15 0 chr6 137573342 137573409 -11943628 + (ATG)n Simple_repeat Simple_repeat 1 68 0 1 1634 468 219 10 10 chr6 137573586 137573683 -11943354 + B1F1 SINE Alu 25 121 -28 1 1634 234 0 0 0 chr6 137573691 137573717 -11943320 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 1 1634 257 310 19 0 chr6 137573762 137573917 -11943120 + (TATATG)n Simple_repeat Simple_repeat 4 161 0 1 1634 471 213 111 84 chr6 137575657 137575847 -11941190 + B3A SINE B2 1 195 -3 1 1634 926 73 0 0 chr6 137576522 137576645 -11940392 + B2_Mm2 SINE B2 3 125 -70 1 1634 575 227 121 0 chr6 137576749 137576881 -11940156 + B1_Mus1 SINE Alu 1 148 0 1 1634 1086 82 7 0 chr6 137577033 137577179 -11939858 + B1_Mus1 SINE Alu 1 147 -1 1 1634 480 259 29 7 chr6 137577760 137577896 -11939141 + B1F1 SINE Alu 3 141 -8 1 1634 234 324 37 37 chr6 137577918 137578027 -11939010 + Lx8 LINE L1 5789 5897 -1576 1 1634 270 0 0 0 chr6 137578804 137578834 -11938203 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1634 333 0 0 0 chr6 137580928 137580965 -11936072 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 1 1634 782 191 14 0 chr6 137581012 137581292 -11935745 + CT-rich Low_complexity Low_complexity 1 284 0 1 1634 343 219 89 73 chr6 137581314 137581437 -11935600 + Lx7 LINE L1 7556 7680 -16 1 1634 34 0 0 0 chr6 137581450 137581484 -11935553 + AT_rich Low_complexity Low_complexity 1 34 0 1 1634 221 0 35 0 chr6 137581535 137581564 -11935473 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1634 401 312 0 0 chr6 137582979 137583088 -11933949 - PB1D7 SINE Alu -6 114 6 1 1634 323 306 56 16 chr6 137583120 137583246 -11933791 + ID_B1 SINE B4 87 217 -7 1 1634 375 182 0 0 chr6 137583690 137583767 -11933270 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1634 690 229 6 25 chr6 137583812 137583969 -11933068 + RSINE1 SINE B4 4 157 -8 1 1634 566 153 113 78 chr6 137584068 137584210 -11932827 + B1_Mur1 SINE Alu 2 148 -1 1 1634 872 292 89 26 chr6 137584298 137584646 -11932391 + Lx8 LINE L1 7104 7473 0 1 1634 313 263 88 95 chr6 137585619 137585635 -11931402 + B4A SINE B4 73 91 -201 1 1634 348 24 0 0 chr6 137585635 137585676 -11931361 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1634 313 263 88 95 chr6 137585676 137585806 -11931231 + B4A SINE B4 92 218 -74 1 1634 468 0 0 0 chr6 137586518 137586570 -11930467 + (TATG)n Simple_repeat Simple_repeat 2 53 0 1 1634 698 188 23 64 chr6 137586574 137586745 -11930292 - RSINE1 SINE B4 0 165 2 1 1634 819 159 0 0 chr6 137587123 137587293 -11929744 + (TG)n Simple_repeat Simple_repeat 1 170 0 1 1634 204 282 0 0 chr6 137587317 137587434 -11929603 + (TG)n Simple_repeat Simple_repeat 2 118 0 1 1634 486 171 16 105 chr6 137587784 137587908 -11929129 + B1_Mus1 SINE Alu 1 113 -35 1 1634 510 156 20 50 chr6 137587909 137588010 -11929027 + B1_Mus2 SINE Alu 45 142 -5 1 1634 396 275 57 16 chr6 137588017 137588139 -11928898 + RSINE1 SINE B4 8 134 -31 1 1634 501 179 34 43 chr6 137588296 137588413 -11928624 + B1_Mur3 SINE Alu 34 149 0 1 1634 207 0 0 0 chr6 137588421 137588444 -11928593 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1634 288 0 0 0 chr6 137589509 137589541 -11927496 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1634 586 264 32 104 chr6 137590135 137590444 -11926593 + B4 SINE B4 1 287 -5 1 1634 431 270 0 10 chr6 137590524 137590614 -11926423 + B1F1 SINE Alu 1 89 -60 1 1634 898 281 27 89 chr6 137590614 137591052 -11925985 + BGLII_B LTR ERVK 1 411 -30 1 1634 239 213 49 0 chr6 137591075 137591136 -11925901 + B1F SINE Alu 86 149 0 1 1634 4495 76 8 8 chr6 137591138 137591792 -11925245 + L1_Mus3 LINE L1 6026 6638 0 1 1634 533 260 51 38 chr6 137592043 137592245 -11924792 + B3A SINE B2 10 215 -1 1 1634 568 296 87 18 chr6 137592326 137592489 -11924548 + L1MC3 LINE L1 6073 6319 -1676 1 1634 180 0 0 0 chr6 137592489 137592509 -11924528 + (GCTG)n Simple_repeat Simple_repeat 1 20 0 1 1634 1005 261 90 27 chr6 137592509 137592921 -11924116 + L1MC3 LINE L1 6303 6752 -1243 1 1634 234 343 0 0 chr6 137592928 137592998 -11924039 - PB1D10 SINE Alu -29 88 19 1 1634 249 299 178 31 chr6 137593054 137593313 -11923724 + L1MC3 LINE L1 6763 7059 -726 1 1634 524 272 83 36 chr6 137593492 137593744 -11923293 + L1MC3 LINE L1 7097 7360 -425 1 1634 2200 177 2 12 chr6 137593782 137594194 -11922843 + MTC LTR MaLR 7 414 -7 1 1634 328 253 50 0 chr6 137594183 137594293 -11922744 - PB1D7 SINE Alu -30 118 2 1 1634 216 80 0 91 chr6 137594392 137594447 -11922590 + G-rich Low_complexity Low_complexity 2 51 0 1 1634 1173 57 0 0 chr6 137594447 137594605 -11922432 + (GGAAA)n Simple_repeat Simple_repeat 1 158 0 1 1634 267 306 23 61 chr6 137594607 137594739 -11922298 + L1MC3 LINE L1 7465 7591 -194 1 1634 235 135 189 19 chr6 137594739 137594792 -11922245 + tRNA-Ala-GCY_ tRNA tRNA 2 63 -12 1 1634 588 95 0 0 chr6 137594978 137595062 -11921975 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1634 345 294 165 0 chr6 137595068 137595238 -11921799 - B4A SINE B4 -93 199 2 1 1634 342 0 0 0 chr6 137596069 137596107 -11920930 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1634 21 100 0 0 chr6 137597710 137597780 -11919257 + GC_rich Low_complexity Low_complexity 1 70 0 1 1634 22 0 0 0 chr6 137598058 137598080 -11918957 + GC_rich Low_complexity Low_complexity 1 22 0 1 1634 201 192 96 0 chr6 137599004 137599056 -11917981 - MIRb SINE MIR -176 92 36 1 1634 504 0 0 0 chr6 137599781 137599837 -11917200 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1634 493 305 40 47 chr6 137599850 137599998 -11917039 - RSINE1 SINE B4 -6 159 13 1 1634 458 319 0 55 chr6 137600071 137600217 -11916820 + ID_B1 SINE B4 87 224 0 1 1634 374 254 31 16 chr6 137600349 137600477 -11916560 + L1MA6 LINE L1 6118 6247 -53 1 1634 230 224 0 33 chr6 137600690 137600750 -11916287 + (TATG)n Simple_repeat Simple_repeat 1 58 0 1 1634 393 117 0 0 chr6 137601912 137601972 -11915065 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1634 447 68 0 0 chr6 137601984 137602043 -11914994 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1634 348 281 85 38 chr6 137602045 137602256 -11914781 + L1MEg LINE L1 1208 1428 -4656 1 1634 232 294 134 6 chr6 137602963 137603134 -11913903 - MER58B DNA MER1_type -104 237 45 1 1634 546 280 27 20 chr6 137603417 137603563 -11913474 + B1_Mur1 SINE Alu 1 147 -2 1 1634 636 14 0 0 chr6 137604381 137604454 -11912583 + (TC)n Simple_repeat Simple_repeat 2 74 0 1 1634 1005 241 78 17 chr6 137604539 137604897 -11912140 - MTD LTR MaLR -21 398 19 1 1634 261 0 0 0 chr6 137605186 137605215 -11911822 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 1634 396 254 112 75 chr6 137605337 137605524 -11911513 - B3A SINE B2 -3 195 2 2 1634 250 346 41 55 chr6 137605533 137605642 -11911395 - ID_B1 SINE B4 -7 217 118 2 1634 1354 112 8 67 chr6 137605642 137605882 -11911155 + URR1A DNA MER1_type 1 226 0 2 1634 250 346 41 55 chr6 137605882 137605992 -11911045 - ID_B1 SINE B4 -107 117 1 2 1634 410 0 20 0 chr6 137606403 137606453 -11910584 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1634 311 292 0 25 chr6 137606672 137606873 -11910164 + GA-rich Low_complexity Low_complexity 1 195 0 2 1634 709 238 37 31 chr6 137607291 137607482 -11909555 + B3 SINE B2 1 192 -24 2 1634 297 296 121 16 chr6 137608752 137608934 -11908103 + L2a LINE L2 2989 3189 -237 2 1634 209 358 0 0 chr6 137608938 137609005 -11908032 + (CACG)n Simple_repeat Simple_repeat 3 69 0 2 1634 193 324 45 9 chr6 137609104 137609216 -11907821 + L2a LINE L2 3259 3374 -1 2 1634 223 305 19 9 chr6 137610172 137610278 -11906759 + (TG)n Simple_repeat Simple_repeat 2 108 0 2 1634 408 299 8 8 chr6 137610295 137610413 -11906624 - ID_B1 SINE B4 -45 179 62 2 1634 306 0 0 0 chr6 137610960 137610994 -11906043 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1634 404 176 0 0 chr6 137611002 137611070 -11905967 - ID4_ SINE ID -13 70 3 2 1634 325 265 77 32 chr6 137611648 137611804 -11905233 + RSINE1 SINE B4 3 165 0 2 1634 22 0 0 0 chr6 137611898 137611920 -11905117 + AT_rich Low_complexity Low_complexity 1 22 0 2 1634 1607 21 21 0 chr6 137611923 137612109 -11904928 + B2_Mm1a SINE B2 2 191 -2 2 1634 415 295 14 14 chr6 137613063 137613204 -11903833 - ID_B1 SINE B4 0 224 84 2 1634 237 298 70 23 chr6 137613302 137613388 -11903649 + PB1 SINE Alu 34 123 -4 2 1634 764 159 15 117 chr6 137614619 137614825 -11902212 + B2_Mm2 SINE B2 1 185 -10 2 1634 185 250 127 38 chr6 137615162 137615241 -11901796 - MIRb SINE MIR -68 200 115 2 1634 234 232 13 80 chr6 137615751 137615826 -11901211 + B4A SINE B4 3 72 -220 2 1634 548 260 33 7 chr6 137615844 137615995 -11901042 + B3 SINE B2 8 162 -54 2 1634 445 290 36 0 chr6 137616063 137616201 -11900836 + B4A SINE B4 129 271 -21 2 1634 396 0 0 0 chr6 137616204 137616248 -11900789 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1634 554 227 155 11 chr6 137616449 137616636 -11900401 + ID_B1 SINE B4 5 218 -6 2 1634 668 208 182 0 chr6 137617545 137617699 -11899338 + B3A SINE B2 1 182 -16 2 1634 2198 159 16 0 chr6 137617753 137618125 -11898912 - ORR1C1 LTR MaLR 0 378 1 2 1634 251 159 0 0 chr6 137618250 137618293 -11898744 - B1_Mur2 SINE Alu -25 124 82 2 1634 1958 120 29 0 chr6 137618293 137618609 -11898428 - ORR1A2 LTR MaLR -1 326 2 2 1634 314 215 51 0 chr6 137618611 137618690 -11898347 - B1_Mus2 SINE Alu -63 84 2 2 1634 459 298 53 7 chr6 137619071 137619223 -11897814 - MLT1G1 LTR MaLR -31 548 390 2 1634 300 265 99 78 chr6 137619251 137619498 -11897539 - MLT1G1 LTR MaLR -6 368 104 2 1634 778 48 0 0 chr6 137619728 137619832 -11897205 - B1_Mm SINE Alu -2 145 42 2 1634 702 0 0 0 chr6 137620114 137620192 -11896845 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 1634 243 258 38 4 chr6 137620377 137620446 -11896591 - MLT1G3 LTR MaLR -265 314 237 2 1634 307 171 13 13 chr6 137620601 137620678 -11896359 + GA-rich Low_complexity Low_complexity 4 80 0 2 1634 662 293 0 0 chr6 137621410 137621567 -11895470 - B3 SINE B2 -12 204 48 2 1634 325 210 16 0 chr6 137622287 137622349 -11894688 - ID_B1 SINE B4 -18 206 144 2 1634 23 0 0 0 chr6 137622461 137622484 -11894553 + AT_rich Low_complexity Low_complexity 1 23 0 2 1634 2611 151 7 20 chr6 137622484 137622930 -11894107 - Lx4A LINE L1 -1 7057 6618 2 1634 317 278 40 0 chr6 137622930 137623056 -11893981 - ID_B1 SINE B4 -91 133 3 2 1634 273 290 66 37 chr6 137623157 137623293 -11893744 + ID_B1 SINE B4 82 221 -3 2 1634 509 283 145 0 chr6 137623419 137623578 -11893459 + B3A SINE B2 1 182 -16 2 1634 313 315 0 0 chr6 137624130 137624219 -11892818 + (CATA)n Simple_repeat Simple_repeat 1 89 0 2 1635 888 215 62 0 chr6 137625685 137625880 -11891157 - B3 SINE B2 0 216 10 2 1635 236 91 0 22 chr6 137626663 137626708 -11890329 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 2 1635 838 90 0 0 chr6 137626709 137626831 -11890206 - B1_Mus2 SINE Alu -1 146 25 2 1635 421 343 33 9 chr6 137626833 137627048 -11889989 - L1_Mur2 LINE L1 -639 5238 5019 2 1635 209 306 6 36 chr6 137627292 137627394 -11889643 + A-rich Low_complexity Low_complexity 5 103 0 2 1635 624 203 0 17 chr6 137627394 137627514 -11889523 + PB1D9 SINE Alu 1 118 -2 2 1635 209 306 6 36 chr6 137627514 137627577 -11889460 + A-rich Low_complexity Low_complexity 104 165 0 2 1635 482 296 8 0 chr6 137628320 137628445 -11888592 - B1F1 SINE Alu -23 126 1 2 1635 228 303 13 0 chr6 137628383 137628459 -11888578 - B4 SINE B4 -145 147 71 2 1635 1059 245 87 48 chr6 137628565 137628746 -11888291 - ORR1D2 LTR MaLR 0 370 174 2 1635 208 0 62 0 chr6 137628746 137628778 -11888259 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1635 1059 245 87 48 chr6 137628778 137628952 -11888085 - ORR1D2 LTR MaLR -197 173 2 2 1635 847 140 0 0 chr6 137629922 137630065 -11886972 - URR1B DNA MER1_type 0 225 83 2 1635 497 254 24 0 chr6 137630133 137630259 -11886778 + B3A SINE B2 22 150 -48 2 1635 375 23 0 0 chr6 137630263 137630307 -11886730 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1635 225 0 0 0 chr6 137630307 137630331 -11886706 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 2 1635 531 0 0 0 chr6 137630338 137630397 -11886640 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 2 1635 23 0 0 0 chr6 137630514 137630537 -11886500 + AT_rich Low_complexity Low_complexity 1 23 0 2 1635 1706 306 48 35 chr6 137630542 137630933 -11886104 + L1MB8 LINE L1 5374 5778 -400 2 1635 1287 93 28 0 chr6 137630933 137631115 -11885922 + B2_Mm2 SINE B2 2 188 -7 2 1635 1706 306 48 35 chr6 137631115 137631471 -11885566 + L1MB8 LINE L1 5779 6131 -47 2 1635 747 258 33 50 chr6 137631484 137631725 -11885312 - B4A SINE B4 -55 237 1 2 1635 574 217 113 42 chr6 137631984 137632152 -11884885 + B3A SINE B2 4 183 -15 2 1635 1019 77 17 23 chr6 137632290 137632463 -11884574 + (GGGA)n Simple_repeat Simple_repeat 2 173 0 2 1635 306 272 10 52 chr6 137632677 137632774 -11884263 + PB1D10 SINE Alu 6 98 -19 2 1635 468 0 0 0 chr6 137632774 137632826 -11884211 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1635 703 320 52 11 chr6 137632977 137633246 -11883791 - B4A SINE B4 -9 283 4 2 1635 786 199 7 0 chr6 137633475 137633616 -11883421 - B1_Mus1 SINE Alu -4 144 3 2 1635 424 209 79 35 chr6 137634053 137634167 -11882870 - ID_B1 SINE B4 -1 223 105 2 1635 579 268 69 72 chr6 137634330 137634620 -11882417 + B4A SINE B4 2 290 -2 2 1635 227 173 0 19 chr6 137634638 137634691 -11882346 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1635 210 156 0 0 chr6 137635083 137635128 -11881909 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1635 257 217 115 26 chr6 137635273 137635429 -11881608 + (CACTC)n Simple_repeat Simple_repeat 3 172 0 2 1635 187 250 50 0 chr6 137635658 137635718 -11881319 + MIRc SINE MIR 31 93 -175 2 1635 531 242 78 0 chr6 137637128 137637256 -11879781 - B1_Mur1 SINE Alu -6 143 6 2 1635 402 280 17 17 chr6 137638530 137638650 -11878387 + B1F1 SINE Alu 1 120 -29 2 1635 217 311 0 0 chr6 137638653 137638727 -11878310 + A-rich Low_complexity Low_complexity 1 74 0 2 1635 526 320 98 53 chr6 137639132 137639460 -11877577 + LTR40c LTR ERVL 42 370 -92 2 1635 417 39 0 0 chr6 137639709 137639760 -11877277 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1635 416 295 15 37 chr6 137640012 137640146 -11876891 + ID_B1 SINE B4 83 213 -11 2 1635 216 86 0 0 chr6 137640147 137640182 -11876855 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1635 826 145 7 7 chr6 137641039 137641192 -11875845 + CT-rich Low_complexity Low_complexity 3 155 0 2 1635 807 223 158 0 chr6 137641201 137641385 -11875652 - B3 SINE B2 0 216 4 2 1635 279 304 0 0 chr6 137641546 137641625 -11875412 - ID4 SINE ID 0 83 5 2 1635 426 314 78 32 chr6 137641813 137642297 -11874740 - L1MA5A LINE L1 -196 5960 5427 2 1635 2279 175 31 63 chr6 137642306 137642404 -11874633 + RLTR24 LTR ERV1 1 96 -433 2 1635 4427 49 6 0 chr6 137642404 137642935 -11874102 + L1Md_F2 LINE L1 6045 6578 -4 2 1635 2279 175 31 63 chr6 137642935 137643378 -11873659 + RLTR24 LTR ERV1 97 525 -4 2 1635 464 314 39 48 chr6 137643454 137643842 -11873195 - L1_Mur3 LINE L1 -479 5401 5048 2 1635 473 252 76 0 chr6 137644198 137644329 -11872708 - ID_B1 SINE B4 -1 223 83 2 1635 623 201 0 6 chr6 137644505 137644675 -11872362 + (TGG)n Simple_repeat Simple_repeat 1 169 0 2 1635 398 258 11 11 chr6 137647581 137647675 -11869362 + RSINE1 SINE B4 14 107 -58 2 1635 322 308 67 20 chr6 137648370 137648519 -11868518 + L1MB1 LINE L1 5881 6036 -132 2 1635 345 24 0 0 chr6 137648657 137648699 -11868338 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1635 247 283 37 28 chr6 137648995 137649104 -11867933 - MIR SINE MIR -76 186 77 2 1635 1171 37 0 0 chr6 137649447 137649582 -11867455 + B1_Mus2 SINE Alu 1 135 -12 2 1635 806 55 0 9 chr6 137649582 137649691 -11867346 + (CAAAA)n Simple_repeat Simple_repeat 3 110 0 2 1635 235 350 59 48 chr6 137649727 137649815 -11867222 + MLT1E2 LTR MaLR 306 394 -260 2 1635 324 0 0 0 chr6 137649815 137649851 -11867186 + (CAG)n Simple_repeat Simple_repeat 1 36 0 2 1635 239 318 73 2 chr6 137649851 137649951 -11867086 + MLT1E2 LTR MaLR 370 492 -162 2 1635 609 305 82 68 chr6 137649984 137650364 -11866673 + MLT1E3 LTR MaLR 8 392 -232 2 1635 189 107 0 0 chr6 137650364 137650392 -11866645 + (CATGC)n Simple_repeat Simple_repeat 5 32 0 2 1635 311 346 10 29 chr6 137650430 137650534 -11866503 - RSINE1 SINE B4 -59 106 5 2 1635 238 284 94 101 chr6 137650599 137650717 -11866320 + MLT1E3 LTR MaLR 473 594 -30 2 1635 1950 132 23 70 chr6 137650717 137651101 -11865936 + Lx4A LINE L1 6692 7057 -1 3 1635 238 284 94 101 chr6 137651101 137651131 -11865906 + MLT1E3 LTR MaLR 595 620 -4 2 1635 31 26 0 0 chr6 137651368 137651406 -11865631 + AT_rich Low_complexity Low_complexity 1 38 0 3 1635 394 226 92 13 chr6 137651918 137652109 -11864928 - B4 SINE B4 -10 282 43 3 1635 487 264 0 0 chr6 137652237 137652358 -11864679 + B3A SINE B2 8 128 -70 3 1635 390 42 0 0 chr6 137652375 137652423 -11864614 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1635 416 293 0 20 chr6 137653500 137653601 -11863436 - RSINE1 SINE B4 -55 110 12 3 1635 278 301 61 14 chr6 137653592 137653740 -11863297 - B4A SINE B4 -43 249 95 3 1635 874 269 28 0 chr6 137653797 137654013 -11863024 - ID_B1 SINE B4 -1 223 2 3 1635 425 281 50 0 chr6 137654304 137654443 -11862594 - B1F SINE Alu -1 148 3 3 1635 419 278 116 58 chr6 137654863 137655088 -11861949 + RMER15 LTR ERVL 338 575 0 3 1635 21 0 0 0 chr6 137655621 137655642 -11861395 + AT_rich Low_complexity Low_complexity 1 21 0 3 1635 319 301 102 45 chr6 137656476 137656720 -11860317 + LTR16B2 LTR ERVL 205 462 0 3 1635 504 0 0 0 chr6 137657030 137657086 -11859951 + (TTCTC)n Simple_repeat Simple_repeat 1 56 0 3 1635 835 134 6 34 chr6 137657087 137657265 -11859772 + CT-rich Low_complexity Low_complexity 4 176 0 3 1635 282 247 0 0 chr6 137657261 137657338 -11859699 + C-rich Low_complexity Low_complexity 4 80 0 3 1635 212 133 0 0 chr6 137657338 137657368 -11859669 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 3 1635 3407 67 12 24 chr6 137657431 137657933 -11859104 + LTRIS2 LTR ERV1 69 564 0 3 1635 939 301 40 11 chr6 137658181 137658453 -11858584 + B4A SINE B4 13 292 0 3 1635 543 164 0 0 chr6 137658453 137658557 -11858480 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1635 308 77 0 19 chr6 137658676 137658729 -11858308 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 3 1635 25 0 0 0 chr6 137659486 137659511 -11857526 + AT_rich Low_complexity Low_complexity 1 25 0 3 1635 227 31 0 30 chr6 137659515 137659548 -11857489 + (TAG)n Simple_repeat Simple_repeat 1 32 0 3 1635 830 225 23 46 chr6 137659693 137659912 -11857125 - MTEa LTR MaLR 0 379 166 3 1635 316 266 6 6 chr6 137659928 137660098 -11856939 + (TG)n Simple_repeat Simple_repeat 1 170 0 3 1635 674 259 33 20 chr6 137660130 137660333 -11856704 - B3A SINE B2 -13 203 10 3 1635 387 307 45 17 chr6 137660327 137660506 -11856531 - MTEa LTR MaLR -193 186 3 3 1635 531 232 32 8 chr6 137660655 137660781 -11856256 - B1_Mur1 SINE Alu -20 129 1 3 1635 375 23 0 0 chr6 137660922 137660966 -11856071 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1635 238 298 0 0 chr6 137660976 137661033 -11856004 - PB1 SINE Alu -70 57 1 3 1635 270 125 0 0 chr6 137662140 137662188 -11854849 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1635 738 157 0 32 chr6 137662261 137662446 -11854591 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1635 2822 23 2 176 chr6 137664363 137664830 -11852207 - RLTR10 LTR ERVK -4 386 1 3 1635 536 316 45 45 chr6 137664869 137665111 -11851926 + B4A SINE B4 2 243 -49 3 1635 2525 290 56 39 chr6 137665288 137666354 -11850683 + Lx8 LINE L1 6169 7252 -221 3 1635 525 71 0 0 chr6 137666550 137666620 -11850417 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1635 1691 206 44 36 chr6 137666746 137667158 -11849879 + MTD LTR MaLR 5 419 0 3 1635 771 150 0 0 chr6 137667169 137667309 -11849728 + (CA)n Simple_repeat Simple_repeat 2 141 0 3 1635 188 356 59 0 chr6 137667742 137667860 -11849177 + L2a LINE L2 3225 3349 -77 3 1635 551 332 54 29 chr6 137668471 137668750 -11848287 + B4A SINE B4 7 292 0 3 1635 837 167 7 0 chr6 137669757 137669901 -11847136 - B1_Mur4 SINE Alu -1 149 5 3 1635 951 108 43 0 chr6 137670016 137670155 -11846882 + B1_Mur3 SINE Alu 5 149 0 3 1635 180 111 0 0 chr6 137670474 137670501 -11846536 + (CATA)n Simple_repeat Simple_repeat 1 27 0 3 1635 1112 183 14 36 chr6 137670528 137670749 -11846288 + B3 SINE B2 1 216 0 3 1635 675 141 80 22 chr6 137671135 137671273 -11845764 - B1_Mus2 SINE Alu 0 147 2 3 1635 629 291 11 16 chr6 137671300 137671482 -11845555 + B3A SINE B2 2 182 -16 3 1635 21 0 0 0 chr6 137671490 137671511 -11845526 + AT_rich Low_complexity Low_complexity 1 21 0 3 1635 1830 108 78 126 chr6 137671647 137672146 -11844891 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1635 24 32 0 0 chr6 137672721 137672752 -11844285 + AT_rich Low_complexity Low_complexity 1 31 0 3 1635 462 198 47 9 chr6 137673128 137673235 -11843802 + B1F1 SINE Alu 27 137 -12 3 1635 436 263 25 0 chr6 137673456 137673574 -11843463 + B1_Mus2 SINE Alu 3 123 -24 3 1635 224 135 58 0 chr6 137673839 137673891 -11843146 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1635 577 294 128 12 chr6 137674169 137674427 -11842610 - B4 SINE B4 -3 289 2 3 1635 241 226 32 0 chr6 137675087 137675149 -11841888 - MTD LTR MaLR 0 419 356 3 1635 696 303 36 16 chr6 137675171 137675419 -11841618 - MTD LTR MaLR -149 270 18 3 1635 1257 88 29 0 chr6 137675630 137675800 -11841237 - B2_Mm2 SINE B2 -19 176 2 3 1635 228 231 0 37 chr6 137676310 137676364 -11840673 + ID_B1 SINE B4 117 168 -56 3 1635 332 305 186 0 chr6 137676423 137676600 -11840437 + ID_B1 SINE B4 1 210 -14 3 1635 513 272 88 0 chr6 137676621 137676768 -11840269 + RSINE1 SINE B4 3 162 -3 3 1635 3282 186 119 64 chr6 137677277 137678226 -11838811 + RLTR21 LTR ERVK 118 1093 -479 3 1635 874 106 0 22 chr6 137678226 137678409 -11838628 + (TG)n Simple_repeat Simple_repeat 1 179 0 3 1635 3282 218 109 63 chr6 137678409 137678641 -11838396 + RLTR21 LTR ERVK 1094 1351 -53 3 1635 183 42 0 0 chr6 137678641 137678665 -11838372 + (C)n Simple_repeat Simple_repeat 1 24 0 3 1635 664 189 40 34 chr6 137678763 137678911 -11838126 - B1_Mur1 SINE Alu 0 149 1 3 1635 569 251 22 5 chr6 137678914 137679061 -11837976 - B3A SINE B2 -10 206 57 3 1635 9714 80 57 137 chr6 137679061 137679399 -11837638 + RLTR22_Mur LTR ERVK 1 358 -1490 3 1635 852 63 0 0 chr6 137679399 137679510 -11837527 + (TTTC)n Simple_repeat Simple_repeat 4 114 0 3 1635 9714 80 57 137 chr6 137679510 137679648 -11837389 + RLTR22_Mur LTR ERVK 359 359 -1489 3 1635 1150 75 0 13 chr6 137679648 137679797 -11837240 - B1_Mus1 SINE Alu 0 148 2 3 1635 9714 80 57 137 chr6 137679797 137680752 -11836285 + RLTR22_Mur LTR ERVK 359 1339 -509 3 1635 477 0 0 0 chr6 137680752 137680805 -11836232 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1635 9714 80 57 137 chr6 137680805 137681380 -11835657 + RLTR22_Mur LTR ERVK 1340 1847 -1 3 1635 408 271 20 48 chr6 137681414 137681561 -11835476 + MLT1E1 LTR MaLR 6 148 -506 3 1635 324 0 0 0 chr6 137681749 137681785 -11835252 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1635 351 0 0 0 chr6 137681785 137681823 -11835214 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1635 271 260 135 0 chr6 137681951 137682055 -11834982 + L1MA4 LINE L1 6181 6298 -2 3 1635 379 223 150 104 chr6 137682884 137683104 -11833933 - B4A SINE B4 -60 232 3 3 1635 191 62 0 59 chr6 137683696 137683730 -11833307 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 3 1635 471 264 88 0 chr6 137684393 137684552 -11832485 - B3 SINE B2 -4 212 40 3 1635 834 165 122 39 chr6 137685427 137685670 -11831367 - ORR1A4 LTR MaLR -2 365 94 3 1635 420 20 0 0 chr6 137685670 137685719 -11831318 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1635 189 94 0 0 chr6 137686208 137686240 -11830797 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1635 1270 34 0 0 chr6 137686241 137686388 -11830649 - B1_Mm SINE Alu 0 147 1 3 1635 475 203 70 70 chr6 137686434 137686577 -11830460 + B1_Mm SINE Alu 5 147 0 3 1635 1168 68 7 0 chr6 137687305 137687451 -11829586 + B1_Mus1 SINE Alu 2 148 0 3 1635 220 262 32 16 chr6 137687980 137688042 -11828995 + ID SINE ID 3 65 -159 3 1635 204 40 0 0 chr6 137689246 137689271 -11827766 + (CGTG)n Simple_repeat Simple_repeat 1 25 0 3 1635 2057 62 18 67 chr6 137689412 137689741 -11827296 - ORR1A2 LTR MaLR 0 327 15 3 1635 317 284 125 40 chr6 137690669 137690810 -11826227 + B3A SINE B2 1 159 -39 3 1635 546 16 0 0 chr6 137690810 137690873 -11826164 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1635 252 86 0 0 chr6 137690877 137690912 -11826125 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1635 317 284 125 40 chr6 137690912 137690941 -11826096 + B3A SINE B2 160 187 -11 3 1635 1382 83 10 15 chr6 137691319 137691514 -11825523 - B2_Mm2 SINE B2 -1 194 1 3 1635 259 224 29 29 chr6 137691557 137691626 -11825411 + ID4_ SINE ID 2 70 -13 3 1635 670 191 37 30 chr6 137692243 137692378 -11824659 - B1_Mus2 SINE Alu -11 136 1 3 1635 1021 198 119 68 chr6 137692553 137692889 -11824148 - ORR1D1 LTR MaLR -17 357 5 3 1635 220 263 53 0 chr6 137693148 137693205 -11823832 - B1F SINE Alu -88 61 2 3 1635 874 180 50 17 chr6 137694224 137694405 -11822632 + URR1B DNA MER1_type 39 225 0 3 1635 369 292 93 59 chr6 137694405 137694440 -11822597 - CYRA11_Mm Unknown Y-chromosome -441 176 135 3 1635 65 70 0 0 chr6 137694842 137694970 -11822067 + AT_rich Low_complexity Low_complexity 1 128 0 3 1635 3282 48 5 2 chr6 137695161 137695556 -11821481 + MTA_Mm LTR MaLR 1 396 0 3 1635 236 371 83 0 chr6 137701895 137702027 -11815010 - MIR3 SINE MIR -10 198 56 3 1635 252 248 44 106 chr6 137702298 137702411 -11814626 + PB1D10 SINE Alu 12 117 0 3 1635 1421 49 49 5 chr6 137702416 137702601 -11814436 + B2_Mm2 SINE B2 2 194 -1 3 1635 206 264 130 11 chr6 137703630 137703722 -11813315 + MIR SINE MIR 41 143 -119 3 1635 22 0 0 0 chr6 137704198 137704220 -11812817 + GC_rich Low_complexity Low_complexity 1 22 0 3 1635 1029 62 0 8 chr6 137704228 137704357 -11812680 - B1_Mus1 SINE Alu -19 129 2 3 1635 248 241 253 0 chr6 137704388 137704475 -11812562 + PB1D10 SINE Alu 2 110 -7 3 1635 762 154 133 41 chr6 137704936 137705132 -11811905 - B3 SINE B2 0 216 3 4 1635 429 256 29 81 chr6 137705176 137705350 -11811687 - RSINE1 SINE B4 0 165 1 4 1635 203 79 0 26 chr6 137705763 137705802 -11811235 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4 1635 1201 54 0 0 chr6 137705802 137705949 -11811088 - B1_Mus2 SINE Alu 0 147 1 4 1635 1290 185 89 34 chr6 137705993 137706368 -11810669 - MTC LTR MaLR 0 407 1 4 1635 879 242 30 5 chr6 137706805 137707004 -11810033 - B3 SINE B2 -11 205 2 4 1635 333 0 0 0 chr6 137707077 137707114 -11809923 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1635 351 0 0 0 chr6 137707114 137707152 -11809885 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1635 37 0 0 0 chr6 137707165 137707202 -11809835 + AT_rich Low_complexity Low_complexity 1 37 0 4 1635 958 185 107 5 chr6 137707202 137707398 -11809639 - B3 SINE B2 0 216 1 4 1635 353 273 40 0 chr6 137707404 137707503 -11809534 - ID_B1 SINE B4 -19 205 103 4 1635 201 133 0 0 chr6 137708485 137708515 -11808522 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1635 23 0 0 0 chr6 137709206 137709229 -11807808 + AT_rich Low_complexity Low_complexity 1 23 0 4 1635 603 27 0 0 chr6 137709909 137709982 -11807055 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1635 1190 54 0 13 chr6 137710107 137710256 -11806781 + B1_Mus2 SINE Alu 1 147 0 4 1635 304 261 136 25 chr6 137710450 137710568 -11806469 + L1MC1 LINE L1 6188 6318 -15 4 1635 371 291 20 78 chr6 137710883 137711036 -11806001 - B4A SINE B4 -127 165 22 4 1635 210 241 34 17 chr6 137711354 137711413 -11805624 + MIRm SINE MIR 86 145 -131 4 1635 537 286 29 39 chr6 137711703 137711731 -11805306 - ID_B1 SINE B4 -16 208 186 4 1635 3314 33 2 17 chr6 137711731 137712133 -11804904 + MTA_Mm LTR MaLR 1 396 0 4 1635 537 286 29 39 chr6 137712133 137712308 -11804729 - ID_B1 SINE B4 -39 185 7 4 1635 249 282 14 14 chr6 137712592 137712664 -11804373 - ID SINE ID -151 73 2 4 1635 288 0 0 0 chr6 137712739 137712771 -11804266 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1635 469 242 13 13 chr6 137713716 137713875 -11803162 + (TATG)n Simple_repeat Simple_repeat 4 162 0 4 1635 557 239 12 0 chr6 137713907 137714070 -11802967 + (TATG)n Simple_repeat Simple_repeat 4 168 0 4 1635 485 230 106 31 chr6 137714381 137714576 -11802461 - RLTR11B LTR ERVK -222 219 6 4 1635 4440 193 45 67 chr6 137714669 137715851 -11801186 - MYSERV6-int LTR ERVK -56 8903 7748 4 1635 249 253 0 0 chr6 137715888 137715975 -11801062 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1635 986 148 7 0 chr6 137716070 137716219 -11800818 - B1_Mur4 SINE Alu 0 150 1 4 1635 2766 174 45 18 chr6 137716391 137716942 -11800095 + RLTR20A2 LTR ERVK 1 566 -12 4 1635 284 185 0 0 chr6 137716932 137716986 -11800051 - 4.5SRNA scRNA scRNA -7 87 34 4 1635 300 259 0 0 chr6 137717079 137717187 -11799850 + (TG)n Simple_repeat Simple_repeat 2 109 0 4 1635 272 355 66 0 chr6 137717462 137717583 -11799454 - ORR1D2 LTR MaLR -235 135 7 4 1635 1295 273 61 24 chr6 137717702 137717822 -11799215 - MTD LTR MaLR -14 405 245 4 1635 3156 68 5 2 chr6 137717822 137718221 -11798816 + MTB LTR MaLR 1 400 0 4 1635 1295 271 56 25 chr6 137718221 137718506 -11798531 - MTD LTR MaLR -129 290 3 4 1635 872 148 7 0 chr6 137719330 137719485 -11797552 + CT-rich Low_complexity Low_complexity 1 156 0 4 1635 462 204 96 10 chr6 137719485 137719589 -11797448 - B1_Mur3 SINE Alu -6 143 31 4 1635 349 228 195 15 chr6 137719903 137720108 -11796929 - BLACKJACK DNA AcHobo -1928 1016 775 4 1635 400 262 143 32 chr6 137720449 137720603 -11796434 - ID_B1 SINE B4 -1 223 53 4 1635 22 0 0 0 chr6 137720878 137720900 -11796137 + GC_rich Low_complexity Low_complexity 1 22 0 4 1635 806 215 41 27 chr6 137720956 137721176 -11795861 - URR1B DNA MER1_type -2 223 1 4 1635 209 250 0 0 chr6 137723659 137723707 -11793330 + C-rich Low_complexity Low_complexity 5 52 0 4 1635 307 277 206 26 chr6 137723710 137723899 -11793138 - ID_B1 SINE B4 -1 223 1 4 1635 214 366 60 30 chr6 137723899 137724099 -11792938 - L2c LINE L2 -259 3128 2923 4 1635 37 0 0 0 chr6 137724345 137724382 -11792655 + AT_rich Low_complexity Low_complexity 1 37 0 4 1635 222 37 0 0 chr6 137725026 137725053 -11791984 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 4 1635 449 300 56 28 chr6 137725209 137725353 -11791684 - RSINE1 SINE B4 -5 160 13 4 1635 415 266 35 87 chr6 137726363 137726536 -11790501 - RSINE1 SINE B4 0 165 2 4 1635 664 233 6 79 chr6 137727690 137727867 -11789170 - RSINE1 SINE B4 0 165 2 4 1635 206 86 0 54 chr6 137728554 137728591 -11788446 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1635 216 374 22 0 chr6 137729541 137729632 -11787405 + B1_Mus2 SINE Alu 7 99 -48 4 1635 524 257 0 9 chr6 137730218 137730324 -11786713 + RSINE1 SINE B4 21 125 -40 4 1635 312 27 0 0 chr6 137730331 137730368 -11786669 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1635 192 152 0 0 chr6 137730428 137730461 -11786576 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 4 1635 497 221 17 26 chr6 137730541 137730657 -11786380 + PB1D10 SINE Alu 1 115 -2 4 1635 372 94 0 0 chr6 137730659 137730712 -11786325 + (GAAAA)n Simple_repeat Simple_repeat 3 55 0 4 1635 402 292 10 7 chr6 137730771 137730953 -11786084 - B3A SINE B2 -7 188 6 4 1635 546 262 18 48 chr6 137732430 137732598 -11784439 - RSINE1 SINE B4 -1 164 2 4 1635 475 285 101 14 chr6 137732672 137732811 -11784226 - Tigger7 DNA MER2_type -2334 157 7 4 1635 453 303 37 55 chr6 137734179 137734343 -11782694 - MTEb LTR MaLR -216 163 3 4 1635 1411 204 135 0 chr6 137734449 137734782 -11782255 - ORR1C1 LTR MaLR 0 378 1 4 1635 971 211 9 40 chr6 137734802 137735024 -11782013 - B3 SINE B2 -1 215 1 4 1635 375 23 0 0 chr6 137736371 137736415 -11780622 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1635 310 257 27 0 chr6 137738884 137738958 -11778079 + L1M5 LINE L1 5753 5828 -296 4 1635 252 200 0 0 chr6 137738993 137739053 -11777984 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1635 232 272 21 42 chr6 137739193 137739289 -11777748 - L1MC4a LINE L1 -2 7880 7787 4 1635 378 324 7 27 chr6 137739321 137739470 -11777567 - L1MC4 LINE L1 -107 7935 7790 4 1635 248 0 0 30 chr6 137739649 137739682 -11777355 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1635 910 240 34 5 chr6 137739731 137739940 -11777097 + ID_B1 SINE B4 1 215 -9 4 1635 513 309 61 47 chr6 137740039 137740317 -11776720 - L1MC4 LINE L1 -625 7417 7136 4 1635 260 254 0 29 chr6 137740323 137740392 -11776645 + CT-rich Low_complexity Low_complexity 3 69 0 4 1635 939 184 5 0 chr6 137740535 137740923 -11776114 + (CA)n Simple_repeat Simple_repeat 1 390 0 4 1635 643 321 94 46 chr6 137741122 137741493 -11775544 - L1MC4 LINE L1 -1037 7005 6614 4 1635 929 113 7 0 chr6 137741493 137741643 -11775394 + (TCTA)n Simple_repeat Simple_repeat 2 152 0 4 1635 643 321 94 46 chr6 137741643 137741794 -11775243 - L1MC4 LINE L1 -1429 6613 6458 4 1635 598 277 50 25 chr6 137742472 137742672 -11774365 + B4 SINE B4 7 211 -81 4 1635 533 224 16 31 chr6 137743182 137743311 -11773726 - RMER20B LTR ERVK -500 127 1 4 1635 473 96 36 0 chr6 137743653 137743736 -11773301 + (TCTCCC)n Simple_repeat Simple_repeat 5 90 0 4 1635 228 212 45 34 chr6 137744436 137744524 -11772513 + T-rich Low_complexity Low_complexity 2 90 0 4 1635 357 306 150 17 chr6 137747537 137747770 -11769267 - L1M2 LINE L1 -489 5814 5551 4 1635 653 289 153 15 chr6 137748354 137748681 -11768356 - ORR1D1 LTR MaLR -2 372 1 4 1635 354 234 61 72 chr6 137749160 137749340 -11767697 - L1MEb LINE L1 -2774 3372 3195 4 1635 259 80 60 0 chr6 137749663 137749713 -11767324 + (CACCAT)n Simple_repeat Simple_repeat 5 57 0 4 1635 256 274 61 31 chr6 137749861 137750057 -11766980 - L1MEb LINE L1 -5172 964 763 4 1635 241 274 271 40 chr6 137750339 137750616 -11766421 + MLT1A1 LTR MaLR 1 341 -67 4 1635 200 326 0 0 chr6 137752483 137752569 -11764468 + GA-rich Low_complexity Low_complexity 1 86 0 4 1635 421 266 181 33 chr6 137753408 137753618 -11763419 - MLT1C LTR MaLR -226 241 1 4 1635 336 229 0 0 chr6 137754783 137754853 -11762184 + ID4_ SINE ID 2 71 -12 4 1635 198 103 0 0 chr6 137754922 137754951 -11762086 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1635 795 284 24 0 chr6 137754953 137755164 -11761873 + B3 SINE B2 1 216 0 4 1635 1059 141 101 0 chr6 137755674 137755872 -11761165 + Lx LINE L1 6437 6654 0 4 1636 589 234 190 140 chr6 137756952 137757310 -11759727 - MTE2a LTR MaLR 0 379 4 4 1636 247 222 80 40 chr6 137759052 137759127 -11757910 - MamRep1161 DNA TcMar -872 85 8 4 1636 299 246 0 64 chr6 137760192 137760379 -11756658 + (GAGTG)n Simple_repeat Simple_repeat 3 177 0 4 1636 195 69 0 0 chr6 137760443 137760472 -11756565 + (CAGTG)n Simple_repeat Simple_repeat 1 29 0 4 1636 738 240 0 0 chr6 137760657 137760786 -11756251 + RSINE1 SINE B4 3 131 -34 4 1636 636 225 28 21 chr6 137761191 137761336 -11755701 + B1F SINE Alu 4 149 0 4 1636 280 270 7 7 chr6 137762288 137762437 -11754600 + (CA)n Simple_repeat Simple_repeat 2 150 0 4 1636 462 65 0 0 chr6 137763963 137764025 -11753012 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1636 603 269 39 50 chr6 137764054 137764336 -11752701 - B4A SINE B4 -10 282 4 4 1636 313 294 10 52 chr6 137764822 137764919 -11752118 - B3A SINE B2 -55 143 51 4 1636 726 276 21 21 chr6 137766129 137766318 -11750719 - B3A SINE B2 -5 193 5 4 1636 255 298 78 17 chr6 137767345 137767461 -11749576 + RSINE1 SINE B4 2 124 -41 4 1636 279 0 0 0 chr6 137767461 137767492 -11749545 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1636 636 255 67 7 chr6 137767542 137767692 -11749345 + B3A SINE B2 2 160 -38 4 1636 2469 232 96 48 chr6 137767698 137767846 -11749191 - RCHARR1 DNA MER1_type -123 851 692 4 1636 3389 43 2 0 chr6 137767846 137768241 -11748796 + MTA_Mm LTR MaLR 1 396 0 5 1636 2469 232 96 48 chr6 137768241 137768865 -11748172 - RCHARR1 DNA MER1_type -283 691 42 4 1636 488 316 57 34 chr6 137768944 137769209 -11747828 - B4A SINE B4 -20 272 2 5 1636 316 346 86 6 chr6 137769541 137769704 -11747333 - MER33 DNA MER1_type -142 182 7 5 1636 438 237 32 0 chr6 137770301 137770394 -11746643 - B1F1 SINE Alu -53 96 1 5 1636 29 28 0 0 chr6 137771054 137771090 -11745947 + AT_rich Low_complexity Low_complexity 1 36 0 5 1636 234 191 21 0 chr6 137771202 137771249 -11745788 - PB1D7 SINE Alu -59 61 14 5 1636 720 33 0 0 chr6 137771632 137771723 -11745314 + (GA)n Simple_repeat Simple_repeat 2 92 0 5 1636 321 197 0 0 chr6 137771798 137771864 -11745173 + (TCTG)n Simple_repeat Simple_repeat 2 67 0 5 1636 22 0 0 0 chr6 137773215 137773237 -11743800 + AT_rich Low_complexity Low_complexity 1 22 0 5 1636 408 271 98 78 chr6 137774691 137775121 -11741916 + L1MCa LINE L1 1116 1661 -4756 5 1636 612 267 112 4 chr6 137775555 137775833 -11741204 + L1MCa LINE L1 2048 2355 -4153 5 1636 180 0 0 0 chr6 137775844 137775864 -11741173 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1636 584 279 192 25 chr6 137775928 137776240 -11740797 - MTE-int LTR MaLR -1081 499 136 5 1636 437 34 17 0 chr6 137776996 137777055 -11739982 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1636 300 200 0 0 chr6 137777305 137777390 -11739647 + GA-rich Low_complexity Low_complexity 2 86 0 5 1636 214 313 45 0 chr6 137777393 137777460 -11739577 + MIRm SINE MIR 79 148 -128 5 1636 384 271 24 8 chr6 137778395 137778518 -11738519 - Lx8 LINE L1 -342 7131 7007 5 1636 402 100 0 0 chr6 137779750 137779810 -11737227 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1636 2885 108 28 34 chr6 137781472 137781942 -11735095 - Lx LINE L1 -1 6653 6187 5 1636 2345 109 25 25 chr6 137781942 137782236 -11734801 + Lx LINE L1 5813 6113 -541 5 1636 3246 66 0 2 chr6 137782236 137782633 -11734404 - MTA_Mm LTR MaLR 0 396 1 5 1636 7831 67 10 71 chr6 137782633 137783802 -11733235 - MTA_Mm-int LTR MaLR 0 1098 1 5 1636 3194 54 10 0 chr6 137783802 137784194 -11732843 - MTA_Mm LTR MaLR 0 396 1 5 1636 2345 109 25 25 chr6 137784194 137784254 -11732783 + Lx LINE L1 6114 6167 -487 5 1636 399 305 104 19 chr6 137784344 137784498 -11732539 - B3 SINE B2 -11 205 39 5 1636 281 307 47 8 chr6 137786038 137786166 -11730871 + RSINE1 SINE B4 3 135 -30 5 1636 412 257 28 0 chr6 137786506 137786615 -11730422 + PB1D7 SINE Alu 9 120 0 5 1636 249 247 40 79 chr6 137786965 137787066 -11729971 + B4 SINE B4 196 292 0 5 1636 254 206 0 16 chr6 137787425 137787489 -11729548 + CT-rich Low_complexity Low_complexity 2 64 0 5 1636 1024 168 66 47 chr6 137789832 137790044 -11726993 + B3 SINE B2 1 216 0 5 1636 689 266 75 24 chr6 137790211 137790423 -11726614 + ID_B1 SINE B4 1 223 -1 5 1636 337 240 0 10 chr6 137792047 137792148 -11724889 + (CAGT)n Simple_repeat Simple_repeat 2 101 0 5 1636 192 125 0 0 chr6 137792224 137792256 -11724781 + (ATG)n Simple_repeat Simple_repeat 1 32 0 5 1636 518 0 0 16 chr6 137792260 137792323 -11724714 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1636 724 226 41 7 chr6 137792325 137792472 -11724565 - B3A SINE B2 -45 153 2 5 1636 422 268 41 59 chr6 137792596 137792866 -11724171 - RLTR15 LTR ERVK -91 268 4 5 1636 539 244 0 5 chr6 137793794 137794022 -11723015 + (TG)n Simple_repeat Simple_repeat 1 226 0 5 1636 542 278 22 145 chr6 137794028 137794352 -11722685 - B4A SINE B4 -5 287 4 5 1636 186 143 0 0 chr6 137795370 137795405 -11721632 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 1636 316 238 0 0 chr6 137795833 137795896 -11721141 + B1F SINE Alu 1 63 -86 5 1636 11824 215 87 81 chr6 137796777 137801290 -11715747 - ETnERV2-int LTR ERVK -218 7188 2935 5 1636 382 152 294 0 chr6 137801309 137801401 -11715636 - RMER16-int LTR ERVK -5081 1056 938 5 1636 1942 166 178 37 chr6 137801406 137801894 -11715143 - RMER16-int LTR ERVK -4587 819 263 5 1636 594 0 0 0 chr6 137801894 137801960 -11715077 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1636 397 277 34 17 chr6 137802107 137802283 -11714754 - RMER16-int LTR ERVK -6878 366 188 5 1636 730 188 17 0 chr6 137802869 137802986 -11714051 - ETnERV2-int LTR ERVK -218 7188 7070 5 1636 1799 168 22 11 chr6 137803320 137803675 -11713362 + ORR1B2 LTR MaLR 1 359 -8 5 1636 250 254 15 15 chr6 137804367 137804435 -11712602 + CT-rich Low_complexity Low_complexity 4 71 0 5 1636 251 233 149 43 chr6 137804790 137804884 -11712153 + Charlie1b DNA MER1_type 106 209 -314 5 1636 1027 285 137 47 chr6 137805267 137805531 -11711506 - MTE-int LTR MaLR -948 632 338 5 1636 918 218 86 0 chr6 137805531 137805728 -11711309 - B3 SINE B2 0 216 3 5 1636 1027 285 137 47 chr6 137805728 137805952 -11711085 - MTE-int LTR MaLR -1243 337 100 5 1636 428 315 92 44 chr6 137806472 137806678 -11710359 - B4A SINE B4 0 292 77 5 1636 473 283 70 5 chr6 137807138 137807337 -11709700 - L1ME3 LINE L1 -274 5888 5677 5 1636 564 244 42 71 chr6 137807351 137807519 -11709518 - RSINE1 SINE B4 -2 163 1 5 1636 298 242 103 18 chr6 137807551 137807716 -11709321 - L1ME3 LINE L1 -537 5625 5435 5 1636 1074 107 0 0 chr6 137807731 137807890 -11709147 + (TTCC)n Simple_repeat Simple_repeat 2 160 0 5 1636 299 355 7 29 chr6 137808877 137809016 -11708021 - MARNA DNA Mariner -22 564 429 5 1636 353 188 111 146 chr6 137809235 137809434 -11707603 - B3A SINE B2 -4 194 3 5 1636 272 268 70 47 chr6 137809450 137809665 -11707372 - L1MA6 LINE L1 0 6300 6081 5 1636 774 298 9 22 chr6 137809709 137809939 -11707098 + B4A SINE B4 2 228 -64 5 1636 1874 111 37 95 chr6 137809944 137810322 -11706715 + ORR1B1 LTR MaLR 39 394 0 5 1636 232 290 0 127 chr6 137810322 137810400 -11706637 + B4A SINE B4 225 292 0 5 1636 545 250 23 8 chr6 137810410 137810543 -11706494 + ID_B1 SINE B4 84 218 -6 5 1636 1029 205 25 78 chr6 137810751 137811032 -11706005 + Lx6 LINE L1 7184 7449 -11 5 1636 450 0 0 0 chr6 137812323 137812373 -11704664 + (CCA)n Simple_repeat Simple_repeat 1 50 0 5 1636 709 64 9 35 chr6 137812915 137813028 -11704009 + L1_Mus1 LINE L1 6458 6567 0 5 1636 476 255 58 121 chr6 137813041 137813215 -11703822 - RSINE1 SINE B4 0 165 3 5 1636 976 288 54 30 chr6 137813361 137813697 -11703340 + ORR1E LTR MaLR 14 357 -2 5 1636 486 0 0 0 chr6 137813815 137813869 -11703168 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1636 262 321 37 112 chr6 137813903 137814278 -11702759 + MTEb LTR MaLR 20 366 -13 5 1636 341 205 37 49 chr6 137814544 137814626 -11702411 + B3 SINE B2 133 213 -3 5 1636 462 171 18 12 chr6 137815143 137815309 -11701728 + (CAGAGA)n Simple_repeat Simple_repeat 1 167 0 5 1636 258 294 58 19 chr6 137815309 137815413 -11701624 - MLT2B5 LTR ERVL -370 231 124 5 1636 364 275 86 60 chr6 137815340 137815491 -11701546 - MTEa LTR MaLR -203 176 22 5 1636 233 244 92 11 chr6 137815599 137815686 -11701351 + MLT1A0 LTR MaLR 1 94 -314 5 1636 449 266 0 0 chr6 137815721 137815830 -11701207 + MLT1A0 LTR MaLR 235 343 -22 5 1636 249 207 254 26 chr6 137815836 137815950 -11701087 - MLT1A1 LTR MaLR 0 408 269 5 1636 310 325 32 0 chr6 137816060 137816183 -11700854 - RCHARR1 DNA MER1_type -3 971 845 5 1636 630 0 0 0 chr6 137816183 137816253 -11700784 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 5 1636 360 253 46 0 chr6 137816254 137816341 -11700696 - B3A SINE B2 -107 91 1 5 1636 1257 218 75 24 chr6 137816369 137816702 -11700335 - RCHARR1 DNA MER1_type -452 522 173 5 1636 247 115 38 19 chr6 137817216 137817269 -11699768 + (TATG)n Simple_repeat Simple_repeat 2 55 0 5 1636 675 333 33 26 chr6 137817275 137817546 -11699491 - B4A SINE B4 0 292 20 5 1636 24 0 0 0 chr6 137817546 137817570 -11699467 + AT_rich Low_complexity Low_complexity 1 24 0 5 1636 3776 36 0 18 chr6 137817573 137818024 -11699013 - L1_Mus1 LINE L1 0 6567 6125 5 1636 22 35 0 0 chr6 137818115 137818144 -11698893 + AT_rich Low_complexity Low_complexity 1 29 0 5 1636 771 101 0 0 chr6 137819098 137819217 -11697820 + (CA)n Simple_repeat Simple_repeat 1 119 0 5 1636 244 86 0 0 chr6 137821376 137821411 -11695626 - U2 snRNA snRNA -153 35 1 5 1636 246 252 28 75 chr6 137821429 137821536 -11695501 - RMER1C Other Other -10 1332 1231 5 1636 942 251 149 40 chr6 137821440 137821781 -11695256 - Lx8 LINE L1 0 7473 7100 5 1636 2566 174 85 84 chr6 137821781 137822391 -11694646 + RMER19C LTR ERVK 1 611 0 5 1636 942 251 149 40 chr6 137822391 137822493 -11694544 - Lx8 LINE L1 -374 7099 6982 5 1636 1775 187 40 57 chr6 137822502 137822904 -11694133 - MTD LTR MaLR -7 412 18 5 1636 501 17 0 0 chr6 137822911 137822969 -11694068 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1636 771 236 7 76 chr6 137823830 137824043 -11692994 - B3 SINE B2 -11 184 6 5 1636 274 250 0 30 chr6 137825621 137825687 -11691350 - B1F2 SINE Alu -85 64 1 5 1636 572 214 41 7 chr6 137825819 137825965 -11691072 + LTR79 LTR ERVL 377 527 0 5 1636 181 324 29 0 chr6 137826016 137826084 -11690953 + L2a LINE L2 3305 3374 -52 5 1636 1197 68 0 0 chr6 137826546 137826692 -11690345 + B1_Mus1 SINE Alu 1 146 -2 5 1636 209 33 33 0 chr6 137826692 137826722 -11690315 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5 1636 2383 123 80 0 chr6 137827002 137827367 -11689670 - ORR1B1 LTR MaLR 0 394 1 5 1636 180 293 41 112 chr6 137827748 137827917 -11689120 + MIR SINE MIR 45 201 -61 5 1636 616 232 103 46 chr6 137827984 137828178 -11688859 + B4 SINE B4 19 223 -69 5 1636 318 132 0 0 chr6 137828330 137828383 -11688654 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 5 1636 625 223 12 0 chr6 137828745 137828911 -11688126 + (TA)n Simple_repeat Simple_repeat 2 169 0 5 1636 26 0 0 0 chr6 137828947 137828973 -11688064 + AT_rich Low_complexity Low_complexity 1 26 0 5 1636 258 352 33 11 chr6 137828980 137829003 -11688034 - B3A SINE B2 -16 182 160 5 1636 249 33 0 0 chr6 137829003 137829033 -11688004 + (CATA)n Simple_repeat Simple_repeat 2 31 0 5 1636 258 352 33 11 chr6 137829033 137829101 -11687936 - B3A SINE B2 -39 159 89 5 1636 1053 97 6 22 chr6 137829151 137829331 -11687706 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 5 1636 1066 74 0 0 chr6 137829331 137829466 -11687571 - B1_Mus1 SINE Alu -11 137 3 5 1636 352 242 0 0 chr6 137829487 137829553 -11687484 - B3 SINE B2 -150 66 1 5 1636 564 42 0 0 chr6 137829635 137829706 -11687331 + (TC)n Simple_repeat Simple_repeat 1 71 0 5 1636 2742 156 113 11 chr6 137829731 137830295 -11686742 + RMER20B LTR ERVK 1 622 -5 6 1636 1179 99 0 0 chr6 137830295 137830467 -11686570 + (CA)n Simple_repeat Simple_repeat 2 173 0 6 1636 390 333 0 0 chr6 137831640 137831772 -11685265 + B1F1 SINE Alu 1 132 -17 6 1636 278 372 78 17 chr6 137832777 137833007 -11684030 - MER102a DNA MER1_type -10 320 77 6 1636 306 115 0 0 chr6 137833041 137833093 -11683944 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1636 423 175 107 0 chr6 137833167 137833270 -11683767 - BC1_Mm scRNA scRNA -37 115 2 6 1636 363 316 82 39 chr6 137833274 137833481 -11683556 - B4 SINE B4 -75 217 2 6 1636 468 0 0 0 chr6 137833527 137833579 -11683458 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1636 1204 68 0 0 chr6 137833579 137833725 -11683312 - B1_Mus2 SINE Alu -1 146 1 6 1636 766 256 185 3 chr6 137833732 137834030 -11683007 + MLT1A0 LTR MaLR 14 365 0 6 1636 531 238 8 8 chr6 137835089 137835216 -11681821 + MER58B DNA MER1_type 215 341 0 6 1636 645 190 0 38 chr6 137836177 137836363 -11680674 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1636 548 176 6 32 chr6 137836725 137836883 -11680154 + (CAGA)n Simple_repeat Simple_repeat 3 156 0 6 1636 405 0 0 0 chr6 137836884 137836929 -11680108 + (CAGAA)n Simple_repeat Simple_repeat 1 45 0 6 1636 231 61 0 0 chr6 137836938 137836971 -11680066 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 6 1636 373 266 151 7 chr6 137836998 137837214 -11679823 - Lx9 LINE L1 -215 7429 7054 6 1636 22 0 0 0 chr6 137838931 137838953 -11678084 + AT_rich Low_complexity Low_complexity 1 22 0 6 1636 314 243 14 72 chr6 137839113 137839251 -11677786 - L1MA4A LINE L1 -365 5935 5805 6 1636 455 118 13 0 chr6 137839708 137839784 -11677253 + (TCC)n Simple_repeat Simple_repeat 2 78 0 6 1636 1112 117 0 11 chr6 137839784 137839966 -11677071 + (TTC)n Simple_repeat Simple_repeat 1 180 0 6 1636 436 195 295 8 chr6 137840806 137840935 -11676102 + MER45A DNA Tip100 8 173 -5 6 1636 283 306 10 0 chr6 137840985 137841084 -11675953 + Lx9 LINE L1 7400 7487 -157 6 1636 2212 98 70 167 chr6 137841751 137842277 -11674760 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1636 6665 62 0 0 chr6 137842430 137843254 -11673783 - L1Md_T LINE L1 0 6582 5759 6 1636 3501 214 35 32 chr6 137843323 137843474 -11673563 - Lx6 LINE L1 -1 7459 7316 6 1636 1433 60 11 11 chr6 137843474 137843659 -11673378 + B2_Mm2 SINE B2 4 188 -7 6 1636 3501 214 35 32 chr6 137843659 137844223 -11672814 - Lx6 LINE L1 -145 7315 6742 6 1636 788 167 0 32 chr6 137844228 137844414 -11672623 + CT-rich Low_complexity Low_complexity 1 180 0 6 1636 2780 181 35 79 chr6 137844449 137845166 -11671871 + RLTR21 LTR ERVK 560 1242 -330 6 1636 243 0 0 0 chr6 137845166 137845193 -11671844 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 6 1636 2780 181 35 79 chr6 137845193 137845257 -11671780 + RLTR21 LTR ERVK 1243 1305 -267 6 1636 774 267 129 45 chr6 137845327 137845684 -11671353 + Lx8 LINE L1 6809 7195 -278 6 1636 396 0 0 0 chr6 137846794 137846838 -11670199 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1636 553 310 7 0 chr6 137846854 137846996 -11670041 - RSINE1 SINE B4 -20 145 3 6 1636 674 206 24 8 chr6 137847323 137847580 -11669457 + (CATA)n Simple_repeat Simple_repeat 1 261 0 6 1636 333 211 26 0 chr6 137847596 137847672 -11669365 + (CA)n Simple_repeat Simple_repeat 2 79 0 6 1636 634 170 6 45 chr6 137847672 137847851 -11669186 + (CATATA)n Simple_repeat Simple_repeat 4 175 0 6 1636 272 239 15 15 chr6 137847854 137847922 -11669115 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1636 203 322 91 0 chr6 137848731 137848852 -11668185 - L2 LINE L2 -851 2568 2437 6 1636 807 249 18 32 chr6 137850042 137850409 -11666628 - RLTR31_Mur LTR ERVK -8 437 114 6 1636 5001 66 5 8 chr6 137852450 137853093 -11663944 - L1Md_F2 LINE L1 0 6582 5942 6 1636 23 54 0 0 chr6 137853725 137853762 -11663275 + AT_rich Low_complexity Low_complexity 1 37 0 6 1636 372 268 37 0 chr6 137854036 137854118 -11662919 + ID_B1 SINE B4 87 171 -53 6 1636 233 325 23 11 chr6 137855305 137855392 -11661645 - RLTR24 LTR ERV1 -441 88 1 6 1636 576 349 26 57 chr6 137855535 137855918 -11661119 - RLTR4_MM-int LTR ERV1 -115 5202 4832 6 1636 653 255 0 39 chr6 137856809 137856964 -11660073 - B1_Mur1 SINE Alu 0 149 1 6 1636 1379 171 11 23 chr6 137857920 137858237 -11658800 + RLTR25A LTR ERVK 60 371 -657 6 1636 202 123 26 64 chr6 137858237 137858315 -11658722 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 6 1636 237 161 69 35 chr6 137858325 137858441 -11658596 + (TA)n Simple_repeat Simple_repeat 2 121 0 6 1636 1830 148 36 18 chr6 137858442 137859015 -11658022 + RLTR25A LTR ERVK 307 839 -264 6 1636 308 227 40 0 chr6 137859020 137859095 -11657942 + RLTR25A LTR ERVK 995 1072 -31 6 1636 466 346 54 29 chr6 137859421 137859736 -11657301 - RLTR4_MM-int LTR ERV1 -1871 3446 3124 6 1636 1002 357 59 61 chr6 137860158 137861783 -11655254 - RLTR4_MM-int LTR ERV1 -3359 4242 2074 6 1636 213 39 0 0 chr6 137862468 137862494 -11654543 + (TGG)n Simple_repeat Simple_repeat 1 26 0 6 1636 330 26 0 0 chr6 137862573 137862612 -11654425 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1636 2900 35 53 0 chr6 137863780 137864119 -11652918 - IAPEY2_LTR LTR ERVK 0 357 1 6 1636 1368 47 82 0 chr6 137864448 137864619 -11652418 + B2_Mm1a SINE B2 2 186 -7 6 1636 234 316 0 0 chr6 137864645 137864721 -11652316 - RLTR24 LTR ERV1 -453 76 1 6 1636 909 243 62 19 chr6 137864990 137865200 -11651837 - ID_B1 SINE B4 -1 223 5 6 1636 319 270 0 165 chr6 137865479 137865643 -11651394 - ID_B1 SINE B4 0 224 88 6 1636 261 259 82 0 chr6 137865669 137865754 -11651283 - L1MC5 LINE L1 -1135 6826 6735 6 1636 473 310 65 77 chr6 137866186 137866742 -11650295 - L1M7 LINE L1 -4384 1834 1286 6 1636 217 286 0 0 chr6 137867709 137867765 -11649272 + B4A SINE B4 97 152 -140 6 1636 449 269 7 51 chr6 137867715 137867852 -11649185 + B1F2 SINE Alu 18 148 -1 6 1636 21 0 0 0 chr6 137868337 137868358 -11648679 + AT_rich Low_complexity Low_complexity 1 21 0 6 1636 336 239 189 18 chr6 137868383 137868494 -11648543 - B3 SINE B2 0 216 87 6 1636 10112 74 18 4 chr6 137868500 137870322 -11646715 + Lx3_Mus LINE L1 5150 7001 -8 6 1636 405 235 0 24 chr6 137870344 137870427 -11646610 - B3 SINE B2 -135 81 1 6 1636 669 110 0 0 chr6 137870563 137870681 -11646356 + (CA)n Simple_repeat Simple_repeat 2 119 0 6 1636 183 267 163 22 chr6 137870757 137870849 -11646188 + MIRb SINE MIR 51 155 -113 6 1636 188 167 0 0 chr6 137871070 137871106 -11645931 + L4 LINE RTE 125 160 -1869 6 1636 561 30 0 0 chr6 137871401 137871468 -11645569 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1636 653 311 116 33 chr6 137872058 137872507 -11644530 - RMER5 LTR ERV1 -1 533 48 6 1636 675 308 69 28 chr6 137872733 137873097 -11643940 - RMER5 LTR ERV1 -10 524 146 6 1636 1461 273 82 32 chr6 137873613 137874140 -11642897 - Lx8 LINE L1 0 7473 6921 6 1636 3459 23 8 0 chr6 137874191 137874584 -11642453 - MTA_Mm LTR MaLR 0 396 1 6 1636 9319 13 32 1 chr6 137874584 137874965 -11642072 - MTA_Mm-int LTR MaLR 0 1098 700 6 1636 207 0 0 0 chr6 137874965 137874988 -11642049 + (CTG)n Simple_repeat Simple_repeat 2 24 0 6 1636 9319 13 32 1 chr6 137874988 137875671 -11641366 - MTA_Mm-int LTR MaLR -399 699 2 6 1636 3568 15 2 0 chr6 137875671 137876066 -11640971 - MTA_Mm LTR MaLR 0 396 1 6 1636 298 325 35 9 chr6 137876455 137876570 -11640467 + B1F SINE Alu 6 123 -26 6 1636 840 249 57 112 chr6 137877616 137878000 -11639037 - MTE2a LTR MaLR -3 376 14 6 1636 264 336 5 16 chr6 137878838 137878959 -11638078 + CT-rich Low_complexity Low_complexity 1 119 0 6 1636 261 214 10 20 chr6 137878983 137879083 -11637954 + CT-rich Low_complexity Low_complexity 1 99 0 6 1636 686 72 0 10 chr6 137880324 137880422 -11636615 + (TCCC)n Simple_repeat Simple_repeat 4 100 0 6 1636 477 279 68 12 chr6 137880480 137880541 -11636496 - B4A SINE B4 -7 285 225 6 1636 639 0 0 0 chr6 137880541 137880612 -11636425 + (TTTA)n Simple_repeat Simple_repeat 1 71 0 6 1636 477 279 68 12 chr6 137880612 137880713 -11636324 - B4A SINE B4 -68 224 116 6 1636 22 35 0 0 chr6 137880869 137880898 -11636139 + AT_rich Low_complexity Low_complexity 1 29 0 6 1636 389 278 112 8 chr6 137882761 137882895 -11634142 + B4A SINE B4 55 202 -90 6 1636 1310 47 16 30 chr6 137882961 137883325 -11633712 + (CA)n Simple_repeat Simple_repeat 1 359 0 6 1636 235 310 43 26 chr6 137884914 137885030 -11632007 + MER106A DNA MER1_type 5 122 -114 6 1636 873 236 29 0 chr6 137885189 137885397 -11631640 + B3 SINE B2 1 214 -2 6 1636 226 150 0 24 chr6 137885771 137885812 -11631225 - 4.5SRNA scRNA scRNA -10 84 45 6 1636 378 243 0 0 chr6 137886379 137886482 -11630555 + (CA)n Simple_repeat Simple_repeat 2 104 0 6 1636 210 91 0 0 chr6 137887389 137887422 -11629615 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1636 316 333 13 54 chr6 137887477 137887626 -11629411 - B4A SINE B4 -48 244 102 6 1637 614 286 70 109 chr6 137888165 137888522 -11628515 + MTEa LTR MaLR 37 379 0 6 1637 707 132 16 0 chr6 137888565 137888686 -11628351 - URR1B DNA MER1_type -9 216 94 6 1637 464 304 127 28 chr6 137888655 137888977 -11628060 - MLT2B3 LTR ERVL -191 363 10 6 1637 1104 164 17 60 chr6 137889163 137889396 -11627641 + URR1B DNA MER1_type 3 225 0 6 1637 365 316 69 69 chr6 137890317 137890562 -11626475 + B4A SINE B4 48 292 0 6 1637 867 160 0 0 chr6 137890563 137890829 -11626208 + (CA)n Simple_repeat Simple_repeat 1 266 0 6 1637 801 168 0 0 chr6 137890861 137891040 -11625997 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 1637 836 152 0 11 chr6 137891056 137891236 -11625801 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 1637 1002 118 0 0 chr6 137891279 137891449 -11625588 + (CA)n Simple_repeat Simple_repeat 2 171 0 6 1637 240 167 0 0 chr6 137891657 137891705 -11625332 - L1MB4 LINE L1 0 6180 6133 6 1637 666 298 145 4 chr6 137892188 137892437 -11624600 + B4A SINE B4 1 284 -8 6 1637 324 102 0 0 chr6 137892458 137892507 -11624530 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1637 252 0 0 0 chr6 137893052 137893080 -11623957 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1637 806 146 0 13 chr6 137893081 137893234 -11623803 + GA-rich Low_complexity Low_complexity 3 153 0 6 1637 526 261 7 43 chr6 137893259 137893399 -11623638 - RSINE1 SINE B4 -29 136 2 6 1637 244 175 140 0 chr6 137893878 137893935 -11623102 + Lx8 LINE L1 7407 7471 -2 6 1637 582 203 122 47 chr6 137893964 137894177 -11622860 + Lx4B LINE L1 6865 7055 -3 6 1637 482 350 50 50 chr6 137895609 137895892 -11621145 + B4A SINE B4 6 288 -4 6 1637 1128 50 14 0 chr6 137896067 137896206 -11620831 + B1_Mus2 SINE Alu 2 142 -5 7 1637 288 70 0 0 chr6 137896210 137896253 -11620784 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 7 1637 725 240 15 40 chr6 137897182 137897382 -11619655 - B3 SINE B2 0 216 22 7 1637 477 0 0 0 chr6 137898407 137898460 -11618577 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1637 1027 228 43 5 chr6 137898514 137898827 -11618210 + ORR1D1 LTR MaLR 14 354 -5 7 1637 841 222 89 16 chr6 137898832 137899079 -11617958 + Lx7 LINE L1 7150 7414 -282 7 1637 348 179 0 0 chr6 137899464 137899542 -11617495 + CT-rich Low_complexity Low_complexity 4 81 0 7 1637 531 31 0 0 chr6 137899548 137899613 -11617424 + (CTA)n Simple_repeat Simple_repeat 2 66 0 7 1637 8432 124 53 8 chr6 137899641 137901851 -11615186 - Lx4A LINE L1 -229 6829 4514 7 1637 322 194 14 27 chr6 137902979 137903053 -11613984 - HAL1-3A_ME LINE L1 -810 2048 1976 7 1637 480 35 0 0 chr6 137903059 137903117 -11613920 + (TAG)n Simple_repeat Simple_repeat 3 60 0 7 1637 446 289 106 42 chr6 137903124 137903511 -11613526 - L1MA4A LINE L1 -377 5926 5449 7 1637 303 71 0 0 chr6 137903511 137903553 -11613484 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 7 1637 374 292 193 17 chr6 137903553 137903606 -11613431 - L1MA4A LINE L1 -432 5448 5394 7 1637 264 187 13 26 chr6 137904082 137904159 -11612878 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 1637 1367 90 26 0 chr6 137904338 137904527 -11612510 - B2_Mm2 SINE B2 0 195 2 7 1637 465 192 24 0 chr6 137905767 137905892 -11611145 + C-rich Low_complexity Low_complexity 6 133 0 7 1637 540 235 119 58 chr6 137906630 137906856 -11610181 + Lx8 LINE L1 6882 7121 -352 7 1637 2190 34 40 14 chr6 137907034 137907331 -11609706 + RLTR10C LTR ERVK 98 402 -34 7 1637 740 222 134 26 chr6 137907566 137907760 -11609277 - B3 SINE B2 0 216 2 7 1637 465 19 0 0 chr6 137907763 137907817 -11609220 + (TAA)n Simple_repeat Simple_repeat 1 54 0 7 1637 677 343 3 92 chr6 137908321 137908636 -11608401 - B4 SINE B4 -2 290 4 7 1637 396 0 0 0 chr6 137908898 137908942 -11608095 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1637 228 249 180 45 chr6 137910636 137910880 -11606157 + RMER12 LTR ERVK 712 988 -334 7 1637 327 257 0 0 chr6 137910880 137910981 -11606056 + (TG)n Simple_repeat Simple_repeat 1 101 0 7 1637 377 270 70 35 chr6 137911755 137911897 -11605140 - L1MA5 LINE L1 0 6300 6154 7 1637 180 0 0 0 chr6 137913767 137913787 -11603250 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1637 23 0 0 0 chr6 137913970 137913993 -11603044 + AT_rich Low_complexity Low_complexity 1 23 0 7 1637 803 186 7 0 chr6 137913993 137914133 -11602904 + B1_Mur2 SINE Alu 2 142 -7 7 1637 432 0 0 0 chr6 137914147 137914195 -11602842 + (TATG)n Simple_repeat Simple_repeat 2 49 0 7 1637 301 385 21 7 chr6 137914201 137914345 -11602692 - RSINE1 SINE B4 -9 156 11 7 1637 250 330 38 19 chr6 137914470 137914575 -11602462 - PB1D10 SINE Alu 0 117 11 7 1637 1155 240 102 12 chr6 137914753 137915086 -11601951 + ORR1D2 LTR MaLR 2 364 -6 7 1637 1197 305 100 20 chr6 137917049 137917657 -11599380 + MER45B DNA Tip100 28 684 -356 7 1637 369 0 0 0 chr6 137917671 137917712 -11599325 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1637 520 282 13 19 chr6 137917719 137917878 -11599159 - MLT1B LTR MaLR -45 345 188 7 1637 614 342 48 11 chr6 137918260 137918532 -11598505 - Tigger7 DNA MER2_type -2199 292 11 7 1637 632 260 50 77 chr6 137919794 137920015 -11597022 + B4 SINE B4 4 218 -74 7 1637 420 301 93 55 chr6 137920026 137920209 -11596828 + B3 SINE B2 12 201 -15 7 1637 217 321 12 12 chr6 137920318 137920400 -11596637 + (CATATA)n Simple_repeat Simple_repeat 1 82 0 7 1637 189 74 0 0 chr6 137920401 137920428 -11596609 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 1637 325 307 185 42 chr6 137920452 137920690 -11596347 + B4A SINE B4 3 274 -18 7 1637 795 116 0 0 chr6 137920706 137920827 -11596210 + (CA)n Simple_repeat Simple_repeat 1 121 0 7 1637 236 77 0 25 chr6 137920844 137920884 -11596153 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 7 1637 243 0 0 0 chr6 137921135 137921162 -11595875 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1637 203 196 21 21 chr6 137921266 137921313 -11595724 + CT-rich Low_complexity Low_complexity 3 49 0 7 1637 284 288 9 46 chr6 137921436 137921545 -11595492 + CT-rich Low_complexity Low_complexity 4 108 0 7 1637 234 241 0 0 chr6 137922456 137922510 -11594527 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1637 445 111 37 0 chr6 137922921 137923002 -11594035 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 7 1637 1347 72 0 0 chr6 137923002 137923182 -11593855 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1637 2363 293 76 8 chr6 137923225 137924065 -11592972 - Lx8 LINE L1 0 7473 6577 7 1637 595 262 17 8 chr6 137924263 137924421 -11592616 - B4A SINE B4 -24 268 108 7 1637 184 305 19 28 chr6 137925990 137926098 -11590939 + MIR SINE MIR 79 185 -77 7 1637 234 196 17 51 chr6 137926490 137926549 -11590488 - Charlie12 DNA MER1_type -9 2864 2808 7 1637 6558 43 9 0 chr6 137926596 137927377 -11589660 - L1Md_T LINE L1 -1 6581 5794 7 1637 233 217 0 0 chr6 137927703 137927763 -11589274 - L1ME2z LINE L1 -115 6329 6270 7 1637 272 99 42 14 chr6 137927763 137927835 -11589202 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 7 1637 656 114 60 0 chr6 137927857 137928024 -11589013 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 7 1637 283 228 106 21 chr6 137929268 137929362 -11587675 + B3A SINE B2 1 102 -96 7 1637 256 189 0 26 chr6 137929909 137929985 -11587052 + (TATG)n Simple_repeat Simple_repeat 3 76 0 7 1637 444 291 88 52 chr6 137930087 137930337 -11586700 - B4A SINE B4 -29 263 5 7 1637 375 78 0 0 chr6 137932142 137932193 -11584844 + (TAA)n Simple_repeat Simple_repeat 2 52 0 7 1637 354 175 0 16 chr6 137932235 137932299 -11584738 + ID_B1 SINE B4 153 215 -9 7 1637 471 35 0 0 chr6 137933020 137933077 -11583960 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1637 289 348 14 41 chr6 137933279 137933426 -11583611 - B1F SINE Alu -5 144 2 7 1637 229 211 58 0 chr6 137933703 137933755 -11583282 - MIRb SINE MIR -92 176 122 7 1637 408 243 100 75 chr6 137934378 137934436 -11582601 + MT2B LTR ERVL 94 155 -446 7 1637 768 103 23 31 chr6 137934436 137934566 -11582471 + B1_Mur4 SINE Alu 1 129 -21 7 1637 658 304 37 59 chr6 137936778 137937051 -11579986 - B4 SINE B4 -24 268 2 7 1637 242 212 40 0 chr6 137937583 137937682 -11579355 + CT-rich Low_complexity Low_complexity 1 103 0 7 1637 180 77 0 0 chr6 137937719 137937745 -11579292 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1637 571 228 0 68 chr6 137937758 137937904 -11579133 - Lx9 LINE L1 -489 7155 7020 7 1637 376 271 0 27 chr6 137938232 137938342 -11578695 + PB1D7 SINE Alu 14 120 0 7 1637 342 123 0 0 chr6 137938422 137938479 -11578558 + (TTC)n Simple_repeat Simple_repeat 1 57 0 7 1637 992 222 15 0 chr6 137938497 137938695 -11578342 - B3 SINE B2 -13 203 3 7 1637 307 253 0 0 chr6 137938854 137938937 -11578100 + (TCTCTG)n Simple_repeat Simple_repeat 4 86 0 7 1637 426 120 43 36 chr6 137938962 137939100 -11577937 + (TCTG)n Simple_repeat Simple_repeat 2 140 0 7 1637 341 335 63 52 chr6 137939360 137939647 -11577390 + Charlie16a DNA MER1_type 53 342 0 7 1637 618 51 0 0 chr6 137939809 137939887 -11577150 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 7 1637 258 271 71 21 chr6 137939894 137940016 -11577021 - B1F SINE Alu -17 132 6 7 1637 805 81 73 0 chr6 137941154 137941278 -11575759 + B1_Mus1 SINE Alu 16 148 0 7 1637 234 174 0 0 chr6 137941278 137941324 -11575713 + G-rich Low_complexity Low_complexity 6 51 0 7 1637 406 314 43 87 chr6 137942075 137942375 -11574662 + LTR53 LTR ERVL 224 510 -9 7 1637 506 79 13 0 chr6 137942463 137942539 -11574498 + (TCCC)n Simple_repeat Simple_repeat 3 79 0 7 1637 869 287 141 8 chr6 137942541 137942896 -11574141 + MTD LTR MaLR 1 402 -17 7 1637 282 126 22 33 chr6 137943511 137943601 -11573436 + A-rich Low_complexity Low_complexity 3 91 0 7 1637 932 235 26 41 chr6 137944198 137944464 -11572573 + L1MA7 LINE L1 4587 4848 -1295 7 1637 1382 291 86 55 chr6 137944544 137945594 -11571443 + L1MA7 LINE L1 5144 6220 -71 7 1637 318 276 90 82 chr6 137946094 137946362 -11570675 + B4 SINE B4 1 270 -22 7 1637 244 258 0 16 chr6 137946804 137946867 -11570170 + BC1_Mm scRNA scRNA 9 70 -82 7 1637 239 301 84 102 chr6 137947433 137947718 -11569319 + B4 SINE B4 10 289 -3 7 1637 229 229 0 0 chr6 137948612 137948660 -11568377 + L1M5 LINE L1 5628 5675 -449 7 1637 587 228 62 7 chr6 137949065 137949211 -11567826 - B3A SINE B2 -33 165 12 7 1637 315 0 0 0 chr6 137949918 137949953 -11567084 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1637 248 373 41 12 chr6 137950070 137950241 -11566796 + MIRb SINE MIR 85 260 -8 7 1637 275 340 52 0 chr6 137950425 137950522 -11566515 - MIR SINE MIR -106 156 55 7 1637 215 191 21 0 chr6 137951048 137951095 -11565942 + L2a LINE L2 3375 3422 -4 7 1637 451 282 31 98 chr6 137951177 137951370 -11565667 - B3A SINE B2 -9 186 7 7 1637 378 241 36 18 chr6 137951982 137952092 -11564945 - MER53 DNA hAT -78 115 4 7 1637 257 265 48 0 chr6 137952372 137952455 -11564582 + (CATATA)n Simple_repeat Simple_repeat 2 88 0 7 1637 321 238 0 0 chr6 137952471 137952551 -11564486 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1637 183 375 55 45 chr6 137952584 137952785 -11564252 + L2 LINE L2 2166 2368 -1051 7 1637 315 146 0 0 chr6 137953867 137953922 -11563115 + (A)n Simple_repeat Simple_repeat 1 55 0 7 1637 406 299 83 38 chr6 137953940 137954204 -11562833 + B4A SINE B4 10 285 -7 8 1637 551 326 119 29 chr6 137955836 137956247 -11560790 + L3 LINE CR1 3222 3669 -820 8 1637 723 289 50 26 chr6 137957570 137957872 -11559165 + L1_Mur3 LINE L1 5122 5430 -450 8 1637 361 115 3 16 chr6 137957907 137957978 -11559059 - ORR1C2 LTR MaLR 0 421 330 8 1637 297 0 0 0 chr6 137957982 137958015 -11559022 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 1637 393 183 0 0 chr6 137958015 137958086 -11558951 - ORR1C2 LTR MaLR -311 73 3 8 1637 721 312 58 36 chr6 137958090 137958455 -11558582 + L1MA5A LINE L1 5513 5885 -412 8 1637 310 356 9 0 chr6 137958534 137958649 -11558388 + ID_B1 SINE B4 21 136 -88 8 1637 243 0 0 0 chr6 137958794 137958821 -11558216 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1637 270 340 0 0 chr6 137959169 137959269 -11557768 - RSINE1 SINE B4 -65 100 1 8 1637 21 0 0 0 chr6 137961326 137961347 -11555690 + AT_rich Low_complexity Low_complexity 1 21 0 8 1637 1415 295 57 44 chr6 137961371 137961895 -11555142 - Lx8 LINE L1 -71 7402 6872 8 1637 317 68 68 0 chr6 137961902 137961961 -11555076 - L1Md_F3 LINE L1 0 6584 6522 8 1637 4504 53 0 4 chr6 137961960 137962506 -11554531 + L1Md_F3 LINE L1 6026 6569 -13 8 1637 315 268 10 20 chr6 137962605 137962704 -11554333 + MTC LTR MaLR 1 98 -323 8 1637 288 320 86 7 chr6 137962797 137962948 -11554089 - RSINE1 SINE B4 -2 163 1 8 1637 225 94 0 0 chr6 137965266 137965298 -11551739 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1637 892 205 97 0 chr6 137965462 137965657 -11551380 + B3 SINE B2 1 214 -2 8 1637 277 298 31 21 chr6 137967018 137967114 -11549923 - PB1D7 SINE Alu -3 117 21 8 1637 704 181 6 0 chr6 137967713 137967879 -11549158 + (CCAA)n Simple_repeat Simple_repeat 1 167 0 8 1637 332 56 70 0 chr6 137968014 137968085 -11548952 + (TTTTTG)n Simple_repeat Simple_repeat 2 77 0 8 1637 1789 268 62 59 chr6 137968127 137968703 -11548334 + Lx6 LINE L1 6882 7459 -1 8 1637 231 300 0 0 chr6 137968859 137968909 -11548128 + ID4_ SINE ID 6 55 -28 8 1637 1583 231 88 34 chr6 137968936 137969470 -11547567 + RLTR20B1 LTR ERVK 1 563 0 8 1637 282 265 59 29 chr6 137969736 137969872 -11547165 - MER58D DNA MER1_type -16 370 231 8 1637 372 310 54 8 chr6 137969894 137970024 -11547013 - MER58D DNA MER1_type -237 149 14 8 1637 737 311 70 45 chr6 137970439 137970672 -11546365 - MLT1A1 LTR MaLR -25 383 155 8 1637 2486 104 50 0 chr6 137970672 137971056 -11545981 - Lx LINE L1 -3 6651 6249 8 1637 737 311 70 45 chr6 137971056 137971196 -11545841 - MLT1A1 LTR MaLR -254 154 1 8 1637 555 282 55 6 chr6 137971940 137972104 -11544933 + B3 SINE B2 1 172 -44 8 1637 39185 11 3 2 chr6 137972598 137978233 -11538804 + L1Md_A LINE L1 1 5586 -297 8 1637 9185 4 0 0 chr6 137978233 137979229 -11537808 + L1Md_A LINE L1 5587 6582 0 8 1637 2541 31 4 0 chr6 137979250 137979562 -11537475 + L1Md_A LINE L1 5294 5615 -2380 8 1637 9186 4 0 0 chr6 137979562 137980558 -11536479 + L1Md_A LINE L1 5587 6582 0 8 1637 263 302 17 94 chr6 137980588 137980705 -11536332 + B1F SINE Alu 1 108 -9 8 1637 780 261 32 9 chr6 137981446 137981663 -11535374 - ID_B1 SINE B4 0 224 3 8 1637 296 265 36 0 chr6 137981993 137982076 -11534961 + MTEb LTR MaLR 6 91 -288 8 1637 439 268 282 24 chr6 137982082 137982415 -11534622 - MTD LTR MaLR 0 419 1 8 1637 260 204 56 0 chr6 137982423 137982477 -11534560 + MTEb LTR MaLR 141 197 -182 8 1637 394 317 54 16 chr6 137982553 137982739 -11534298 + MTEb LTR MaLR 187 379 0 8 1637 216 143 0 0 chr6 137982850 137982892 -11534145 + (TAA)n Simple_repeat Simple_repeat 2 43 0 8 1637 492 18 0 0 chr6 137984364 137984421 -11532616 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 8 1637 345 100 0 0 chr6 137985323 137985373 -11531664 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1637 193 70 45 23 chr6 137986044 137986088 -11530949 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 8 1637 565 215 213 11 chr6 137986247 137986421 -11530616 - B3 SINE B2 -6 210 2 8 1637 790 291 106 27 chr6 137986458 137986787 -11530250 + ORR1E LTR MaLR 5 359 0 8 1637 236 53 26 0 chr6 137987550 137987588 -11529449 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1637 529 264 0 60 chr6 137988442 137988591 -11528446 - B1F SINE Alu -7 142 3 8 1637 261 283 76 0 chr6 137988666 137988758 -11528279 + RSINE1 SINE B4 41 139 -26 8 1637 896 156 0 6 chr6 137988983 137989164 -11527873 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1637 631 183 11 0 chr6 137989193 137989368 -11527669 + (TG)n Simple_repeat Simple_repeat 1 177 0 8 1637 483 118 0 0 chr6 137989368 137989444 -11527593 + (GA)n Simple_repeat Simple_repeat 1 76 0 8 1637 37 0 0 0 chr6 137989521 137989558 -11527479 + AT_rich Low_complexity Low_complexity 1 37 0 8 1637 412 302 124 25 chr6 137989840 137990081 -11526956 - Cheshire DNA MER1_type 0 341 77 8 1637 495 211 53 35 chr6 137990119 137990232 -11526805 + RSINE1 SINE B4 11 125 -40 8 1637 423 0 0 0 chr6 137990365 137990412 -11526625 + (TTA)n Simple_repeat Simple_repeat 2 48 0 8 1637 854 296 68 7 chr6 137990419 137990728 -11526309 - ORR1D2 LTR MaLR -8 362 35 8 1637 597 252 201 17 chr6 137991536 137991835 -11525202 + ORR1E LTR MaLR 2 355 -4 8 1637 489 248 26 0 chr6 137993281 137993398 -11523639 + LFSINE_Vert SINE SINE 22 141 -318 8 1637 1610 229 76 18 chr6 137993765 137994161 -11522876 + MTD LTR MaLR 1 419 0 8 1637 816 200 18 192 chr6 137994537 137994766 -11522271 + B3A SINE B2 7 198 0 8 1637 21 0 0 0 chr6 137994884 137994905 -11522132 + AT_rich Low_complexity Low_complexity 1 21 0 8 1637 834 273 150 42 chr6 137995751 137996110 -11520927 + Lx6 LINE L1 6894 7291 -169 8 1637 631 197 8 16 chr6 137996511 137996640 -11520397 + B1_Mur1 SINE Alu 1 128 -21 8 1637 494 128 0 11 chr6 137996645 137996740 -11520297 + (GA)n Simple_repeat Simple_repeat 2 95 0 8 1637 578 39 13 0 chr6 137997839 137997916 -11519121 + (CA)n Simple_repeat Simple_repeat 2 79 0 8 1637 21 0 0 0 chr6 137998169 137998190 -11518847 + AT_rich Low_complexity Low_complexity 1 21 0 8 1637 1284 89 0 0 chr6 137998973 137999153 -11517884 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 8 1637 180 0 0 0 chr6 137999153 137999173 -11517864 + (CCTA)n Simple_repeat Simple_repeat 1 20 0 8 1637 380 37 19 0 chr6 137999180 137999234 -11517803 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1637 521 297 40 0 chr6 137999272 137999420 -11517617 + B3A SINE B2 25 178 -20 8 1637 3341 43 8 0 chr6 137999451 137999845 -11517192 + MTB LTR MaLR 1 397 -3 8 1637 512 248 8 8 chr6 138000000 138000118 -11516919 + ID_B1 SINE B4 107 224 0 1 1637 464 326 71 3 chr6 138000124 138000233 -11516804 + L1M3 LINE L1 4474 4588 -1555 2 1637 444 67 0 0 chr6 138000233 138000293 -11516744 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1637 464 326 71 3 chr6 138000293 138000478 -11516559 + L1M3 LINE L1 4589 4787 -1356 2 1637 580 299 119 35 chr6 138000552 138000749 -11516288 + L1M3 LINE L1 4912 5120 -1020 2 1637 423 0 0 0 chr6 138000749 138000796 -11516241 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1637 580 332 98 38 chr6 138000796 138001391 -11515646 + L1M3 LINE L1 5121 5776 -395 2 1637 398 241 66 41 chr6 138001411 138001532 -11515505 + B1F SINE Alu 18 141 -8 5 1637 785 163 256 0 chr6 138001594 138001766 -11515271 + B3 SINE B2 1 216 0 6 1637 23 54 0 0 chr6 138001766 138001803 -11515234 + AT_rich Low_complexity Low_complexity 1 37 0 7 1637 258 56 0 0 chr6 138002411 138002447 -11514590 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 8 1637 396 312 53 9 chr6 138002449 138002562 -11514475 - ID_B1 SINE B4 -14 210 93 9 1637 252 195 164 99 chr6 138002580 138002751 -11514286 + L1MA6 LINE L1 6116 6297 -3 1 1637 418 222 109 77 chr6 138002757 138002913 -11514124 + B3A SINE B2 1 161 -37 1 1637 780 48 0 0 chr6 138002925 138003030 -11514007 + (TCTCTG)n Simple_repeat Simple_repeat 2 106 0 1 1637 407 317 28 0 chr6 138003077 138003219 -11513818 + B1F2 SINE Alu 4 149 0 1 1637 872 269 60 79 chr6 138003226 138003804 -11513233 + Lx6 LINE L1 6290 7200 -260 1 1637 180 176 0 0 chr6 138004840 138004874 -11512163 + (ATATG)n Simple_repeat Simple_repeat 3 36 0 1 1637 320 261 11 21 chr6 138005047 138005141 -11511896 + CT-rich Low_complexity Low_complexity 1 93 0 1 1637 678 78 267 0 chr6 138006422 138006538 -11510499 - B1_Mus1 SINE Alu 0 148 2 1 1637 331 311 143 6 chr6 138006549 138006717 -11510320 - L1M5 LINE L1 -404 5775 5585 1 1637 788 297 42 4 chr6 138006935 138007199 -11509838 + B4A SINE B4 4 277 -15 1 1637 284 48 0 23 chr6 138007214 138007257 -11509780 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1637 256 313 141 27 chr6 138007259 138007515 -11509522 - L1MC LINE L1 -826 5320 5036 2 1637 3571 18 0 2 chr6 138008312 138008709 -11508328 + MTA_Mm LTR MaLR 1 396 0 2 1637 234 250 75 0 chr6 138010467 138010627 -11506410 + (AGATG)n Simple_repeat Simple_repeat 1 172 0 2 1637 267 298 12 23 chr6 138011212 138011298 -11505739 - ID_B1 SINE B4 -9 215 131 2 1637 287 268 14 14 chr6 138011435 138011507 -11505530 - ID_B1 SINE B4 -6 218 147 2 1637 3571 39 121 0 chr6 138011509 138011949 -11505088 + MT2_Mm LTR ERVL 1 493 0 2 1637 48870 15 1 0 chr6 138011949 138017305 -11499732 + MERVL-int LTR ERVL 1 5360 -125 2 1637 362 167 46 35 chr6 138017305 138017392 -11499645 + ORR1A3-int LTR MaLR 553 640 -1323 2 1637 321 0 0 0 chr6 138017392 138017430 -11499607 + MERVL-int LTR ERVL 5448 5485 0 2 1637 3600 34 121 0 chr6 138017430 138017870 -11499167 + MT2_Mm LTR ERVL 1 493 0 2 1638 218 341 0 24 chr6 138018946 138019030 -11498007 - ID4_ SINE ID 0 83 2 2 1638 558 272 48 26 chr6 138020284 138020473 -11496564 - B3 SINE B2 -23 193 1 2 1638 477 0 0 0 chr6 138020598 138020651 -11496386 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1638 543 288 0 66 chr6 138020998 138021011 -11496026 - B3A SINE B2 0 198 187 3 1638 252 0 0 0 chr6 138021011 138021039 -11495998 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1638 543 288 0 66 chr6 138021039 138021207 -11495830 - B3A SINE B2 -12 186 29 3 1638 224 241 0 18 chr6 138021761 138021816 -11495221 + B3A SINE B2 14 67 -131 3 1638 234 269 75 0 chr6 138022120 138022187 -11494850 + ID_B1 SINE B4 90 161 -63 3 1638 330 195 0 8 chr6 138022540 138022659 -11494378 + CT-rich Low_complexity Low_complexity 1 118 0 3 1638 21 0 0 0 chr6 138022724 138022745 -11494292 + AT_rich Low_complexity Low_complexity 1 21 0 3 1638 2116 126 3 13 chr6 138022935 138023249 -11493788 - RLTR10E LTR ERVK 0 311 1 3 1638 361 322 8 0 chr6 138023805 138023923 -11493114 - B4 SINE B4 -3 289 171 3 1638 708 276 9 69 chr6 138024189 138024422 -11492615 + RMER15 LTR ERVL 357 575 0 3 1638 352 260 66 44 chr6 138024429 138024566 -11492471 - B4 SINE B4 -151 141 2 3 1638 363 280 24 41 chr6 138025118 138025193 -11491844 + B1F SINE Alu 27 102 -47 4 1638 5745 77 1 3 chr6 138025193 138025937 -11491100 + L1Md_F2 LINE L1 5837 6579 -3 4 1638 363 280 24 41 chr6 138025937 138025984 -11491053 + B1F SINE Alu 103 147 -2 4 1638 465 19 0 0 chr6 138026053 138026107 -11490930 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1638 288 0 0 0 chr6 138026107 138026138 -11490899 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1638 272 325 126 8 chr6 138026774 138026901 -11490136 + B4A SINE B4 2 143 -149 4 1638 3072 59 34 0 chr6 138026983 138027370 -11489667 - MTB LTR MaLR 0 400 1 4 1638 471 18 0 0 chr6 138027441 138027497 -11489540 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1638 625 279 117 73 chr6 138029606 138029947 -11487090 + ORR1E LTR MaLR 4 359 0 4 1638 238 291 185 113 chr6 138030315 138030466 -11486571 + RSINE1 SINE B4 4 165 0 4 1638 615 121 0 0 chr6 138030473 138030572 -11486465 + (TC)n Simple_repeat Simple_repeat 2 100 0 4 1638 233 128 21 0 chr6 138031577 138031624 -11485413 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1638 780 251 19 29 chr6 138031668 138031877 -11485160 - B3 SINE B2 -6 210 4 5 1638 218 354 0 84 chr6 138031998 138032140 -11484897 + RSINE1 SINE B4 6 135 -30 5 1638 330 266 0 0 chr6 138032359 138032487 -11484550 + (CA)n Simple_repeat Simple_repeat 2 129 0 5 1638 284 253 12 37 chr6 138032836 138032918 -11484119 - Lx8 LINE L1 -150 7323 7244 5 1638 1014 271 24 33 chr6 138032919 138033255 -11483782 + Lx8 LINE L1 6916 7248 -225 5 1638 254 241 45 84 chr6 138033489 138033643 -11483394 + B1F SINE Alu 2 149 0 5 1638 223 271 136 0 chr6 138033645 138033704 -11483333 + ID4_ SINE ID 4 70 -13 5 1638 528 186 0 0 chr6 138033719 138033832 -11483205 + GA-rich Low_complexity Low_complexity 3 115 0 5 1638 484 306 35 0 chr6 138033856 138034026 -11483011 + B3A SINE B2 5 180 -18 5 1638 297 198 0 0 chr6 138034138 138034249 -11482788 + (CA)n Simple_repeat Simple_repeat 1 111 0 5 1638 339 157 0 0 chr6 138034292 138034381 -11482656 + (CA)n Simple_repeat Simple_repeat 1 89 0 5 1638 470 217 3 0 chr6 138034543 138034850 -11482187 + (CCCCAG)n Simple_repeat Simple_repeat 1 308 0 6 1638 1125 76 0 7 chr6 138034882 138035028 -11482009 + B1_Mus2 SINE Alu 1 145 -2 6 1638 599 305 25 117 chr6 138035072 138035230 -11481807 + MTD LTR MaLR 65 217 -204 6 1638 387 0 0 0 chr6 138035230 138035273 -11481764 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1638 531 45 0 0 chr6 138035274 138035340 -11481697 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 1638 618 247 83 35 chr6 138035340 138035572 -11481465 + MTD LTR MaLR 218 420 -1 6 1638 647 331 98 8 chr6 138036862 138037218 -11479819 - Lx9 LINE L1 -208 7436 7049 6 1638 309 208 139 0 chr6 138037162 138037234 -11479803 + Lx8 LINE L1 6829 6910 -563 6 1638 496 216 10 0 chr6 138037507 138037604 -11479433 + ID_B1 SINE B4 2 99 -125 6 1638 213 298 11 35 chr6 138038754 138038841 -11478196 - L2 LINE L2 -1075 2344 2260 6 1638 1637 210 18 39 chr6 138038908 138039294 -11477743 + ORR1C1 LTR MaLR 1 378 0 6 1638 715 318 42 56 chr6 138039707 138040067 -11476970 + ORR1E LTR MaLR 1 355 -4 7 1638 745 287 77 22 chr6 138040212 138040486 -11476551 + B4 SINE B4 2 290 -2 7 1638 402 308 57 18 chr6 138040560 138040761 -11476276 - B3A SINE B2 0 216 2 7 1638 563 161 212 0 chr6 138040770 138040888 -11476149 - B1_Mur4 SINE Alu -7 143 1 7 1638 1170 82 0 0 chr6 138041968 138042115 -11474922 - B1_Mus2 SINE Alu 0 147 1 7 1638 22 35 0 0 chr6 138042150 138042179 -11474858 + AT_rich Low_complexity Low_complexity 1 29 0 7 1638 241 362 23 38 chr6 138042424 138042556 -11474481 + L2a LINE L2 3055 3184 -242 7 1638 225 255 20 0 chr6 138042682 138042733 -11474304 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 7 1638 435 68 0 0 chr6 138042752 138042811 -11474226 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1638 971 167 4 0 chr6 138042809 138043095 -11473942 + (TCTA)n Simple_repeat Simple_repeat 1 287 0 7 1638 182 282 33 76 chr6 138043152 138043244 -11473793 + L2a LINE L2 3338 3425 -1 7 1638 861 247 0 11 chr6 138043921 138044109 -11472928 - B4A SINE B4 -43 249 64 8 1638 201 39 0 0 chr6 138045028 138045054 -11471983 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1638 2897 52 0 0 chr6 138046779 138047126 -11469911 - L1Md_F2 LINE L1 -139 5744 5398 8 1638 7143 45 0 2 chr6 138047126 138047986 -11469051 + L1Md_F2 LINE L1 5725 6582 0 8 1638 309 247 0 63 chr6 138048287 138048382 -11468655 - B1F1 SINE Alu -52 97 9 8 1638 382 307 25 51 chr6 138049642 138049800 -11467237 + MLT1J LTR MaLR 42 195 -317 8 1638 327 38 35 70 chr6 138050111 138050168 -11466869 - HAL1-3A_ME LINE L1 -828 2030 1976 8 1638 1543 111 106 8 chr6 138050205 138050469 -11466568 - ORR1A2 LTR MaLR -9 318 29 8 1638 358 165 35 12 chr6 138050487 138050573 -11466464 - ORR1A2 LTR MaLR -239 88 1 8 1638 335 335 44 67 chr6 138050629 138050927 -11466110 - B4A SINE B4 0 292 2 8 1638 1321 251 73 16 chr6 138051296 138051664 -11465373 - MTC LTR MaLR -21 400 12 8 1638 242 305 158 7 chr6 138052241 138052393 -11464644 - B4A SINE B4 -117 175 1 9 1638 25 65 0 0 chr6 138052588 138052634 -11464403 + AT_rich Low_complexity Low_complexity 1 46 0 9 1638 212 286 36 0 chr6 138052692 138052776 -11464261 + A-rich Low_complexity Low_complexity 1 87 0 9 1638 207 0 0 0 chr6 138052778 138052801 -11464236 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 9 1638 952 276 30 11 chr6 138052808 138053072 -11463965 - Lx7 LINE L1 -393 7303 7035 9 1638 636 156 0 77 chr6 138053492 138053687 -11463350 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1638 502 293 91 102 chr6 138053879 138054316 -11462721 - ORR1B2-int LTR MaLR -2 1578 768 9 1638 663 278 240 13 chr6 138054393 138054706 -11462331 + MTD LTR MaLR 18 401 -18 9 1638 353 359 126 8 chr6 138056198 138056555 -11460482 - LTR31 LTR ERV1 -15 604 206 9 1638 27 49 0 0 chr6 138057052 138057093 -11459944 + AT_rich Low_complexity Low_complexity 1 41 0 9 1638 402 314 16 8 chr6 138057153 138057278 -11459759 - B3A SINE B2 -72 126 1 1 1638 1150 203 14 55 chr6 138057459 138057751 -11459286 - ORR1B2-int LTR MaLR -1229 280 1 9 1638 1459 186 58 66 chr6 138057751 138057960 -11459077 - ORR1B2 LTR MaLR 0 367 167 9 1638 1221 7 0 0 chr6 138057960 138058098 -11458939 + (GA)n Simple_repeat Simple_repeat 1 138 0 1 1638 1459 186 58 66 chr6 138058098 138058251 -11458786 - ORR1B2 LTR MaLR -201 166 10 9 1638 2692 171 46 141 chr6 138059484 138060157 -11456880 + RMER19C LTR ERVK 1 609 -2 1 1638 678 25 0 0 chr6 138061366 138061446 -11455591 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1638 206 274 28 120 chr6 138061742 138061850 -11455187 + L2b LINE L2 3278 3375 0 1 1638 35 0 0 0 chr6 138062041 138062076 -11454961 + AT_rich Low_complexity Low_complexity 1 35 0 1 1638 524 298 87 0 chr6 138062097 138062258 -11454779 - ID_B1 SINE B4 -43 181 7 1 1638 39 60 0 0 chr6 138062414 138062481 -11454556 + AT_rich Low_complexity Low_complexity 1 67 0 1 1638 222 191 0 0 chr6 138062505 138062552 -11454485 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1638 366 85 0 0 chr6 138062552 138062611 -11454426 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 1 1638 246 143 0 0 chr6 138063262 138063311 -11453726 + (G)n Simple_repeat Simple_repeat 1 49 0 1 1638 48 91 0 0 chr6 138063663 138063795 -11453242 + AT_rich Low_complexity Low_complexity 1 132 0 1 1638 671 285 32 11 chr6 138063804 138063992 -11453045 - B3A SINE B2 -2 196 5 1 1638 831 125 12 6 chr6 138064175 138064344 -11452693 + (TC)n Simple_repeat Simple_repeat 2 171 0 1 1638 279 0 0 0 chr6 138064344 138064375 -11452662 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1638 1060 86 111 0 chr6 138064560 138064722 -11452315 - B2_Mm2 SINE B2 -14 181 2 1 1638 631 205 34 0 chr6 138064827 138064944 -11452093 + B1F1 SINE Alu 6 126 -23 1 1638 339 85 0 0 chr6 138067296 138067343 -11449694 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1 1638 189 0 0 0 chr6 138067422 138067443 -11449594 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1638 562 340 118 16 chr6 138067618 138067941 -11449096 - Lx8 LINE L1 -183 7290 6935 1 1638 557 276 33 7 chr6 138067941 138068094 -11448943 + B3A SINE B2 1 157 -41 1 1638 802 261 37 25 chr6 138068152 138068396 -11448641 - Lx8 LINE L1 -525 6948 6702 1 1638 2294 119 0 20 chr6 138068397 138068749 -11448288 - L1_Mur2 LINE L1 -576 5301 4957 1 1638 2852 134 92 14 chr6 138068749 138069240 -11447797 + Lx4A LINE L1 6530 7058 0 1 1638 34 24 0 0 chr6 138069240 138069281 -11447756 + AT_rich Low_complexity Low_complexity 1 41 0 1 1638 1290 265 28 6 chr6 138069281 138069604 -11447433 - Lx8 LINE L1 -788 6685 6356 1 1638 34952 93 16 18 chr6 138069996 138076358 -11440679 - L1Md_F2 LINE L1 -1 6581 238 1 1638 451 258 171 12 chr6 138076358 138076608 -11440429 - MLT1A0 LTR MaLR -66 299 1 1 1638 371 133 0 22 chr6 138078345 138078437 -11438600 + (TCTCTG)n Simple_repeat Simple_repeat 6 95 0 1 1638 260 254 0 0 chr6 138078451 138078510 -11438527 - ID_B1 SINE B4 -52 172 114 1 1638 243 308 13 0 chr6 138078678 138078756 -11438281 + ID4_ SINE ID 1 79 -4 1 1638 426 108 0 0 chr6 138079696 138079761 -11437276 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1638 438 313 8 0 chr6 138079761 138079892 -11437145 - ID_B1 SINE B4 -6 218 87 1 1638 2340 62 6 0 chr6 138080107 138080428 -11436609 - MTB_Mm LTR MaLR -84 323 1 1 1638 472 283 124 76 chr6 138080503 138080859 -11436178 + MTE2b LTR MaLR 3 375 -4 1 1638 786 272 11 0 chr6 138081139 138081323 -11435714 + B3 SINE B2 24 209 -7 1 1638 496 132 19 0 chr6 138081505 138081611 -11435426 + (TATG)n Simple_repeat Simple_repeat 2 109 0 1 1638 2157 31 8 8 chr6 138081690 138081950 -11435087 + L1Md_F2 LINE L1 6322 6581 -1 1 1638 381 43 0 0 chr6 138082019 138082066 -11434971 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1638 1399 259 100 26 chr6 138082174 138083178 -11433859 - L1_Rod LINE L1 -3868 1979 892 1 1638 2062 202 124 17 chr6 138084753 138084798 -11432239 - MT2B LTR ERVL 0 601 555 1 1638 472 15 31 0 chr6 138084798 138084863 -11432174 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1 1638 2062 202 124 17 chr6 138084863 138085355 -11431682 - MT2B LTR ERVL -47 554 6 1 1638 948 108 0 0 chr6 138085367 138085524 -11431513 + (CA)n Simple_repeat Simple_repeat 2 158 0 1 1638 355 299 189 20 chr6 138086085 138086334 -11430703 + MLT1A0 LTR MaLR 1 291 -74 1 1638 426 260 75 85 chr6 138086394 138086757 -11430280 - L1ME3 LINE L1 -152 6012 5655 1 1638 771 105 0 0 chr6 138086998 138087122 -11429915 + (CA)n Simple_repeat Simple_repeat 2 125 0 1 1638 294 301 80 0 chr6 138088059 138088172 -11428865 + B1F1 SINE Alu 27 148 -1 1 1638 311 234 6 35 chr6 138088229 138088398 -11428639 + GA-rich Low_complexity Low_complexity 1 163 0 1 1638 630 39 0 0 chr6 138088398 138088475 -11428562 + (GAAAA)n Simple_repeat Simple_repeat 4 80 0 1 1638 365 333 0 0 chr6 138090984 138091092 -11425945 + PB1D10 SINE Alu 1 108 -9 1 1638 283 250 38 0 chr6 138092004 138092084 -11424953 + PB1D10 SINE Alu 7 89 -28 1 1638 456 19 0 0 chr6 138092377 138092430 -11424607 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 1 1638 201 39 0 0 chr6 138092975 138093001 -11424036 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 1 1638 248 339 35 18 chr6 138093454 138093568 -11423469 + MER2 DNA MER2_type 72 187 -158 1 1638 862 252 99 108 chr6 138093587 138093996 -11423041 - MTD LTR MaLR 0 407 13 1 1638 222 37 0 0 chr6 138094966 138094993 -11422044 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1638 528 310 24 37 chr6 138094997 138095161 -11421876 - RSINE1 SINE B4 -2 163 2 1 1638 384 293 0 7 chr6 138095928 138096033 -11421004 - B1F SINE Alu -6 143 14 1 1638 1452 3 11 9 chr6 138096412 138096768 -11420269 + (TCTA)n Simple_repeat Simple_repeat 1 356 0 1 1638 667 310 54 42 chr6 138097019 138097352 -11419685 - MLT1A0 LTR MaLR -15 350 14 1 1638 281 277 0 0 chr6 138097430 138097495 -11419542 + ID4_ SINE ID 9 73 -10 1 1638 243 103 0 0 chr6 138098352 138098391 -11418646 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1638 414 0 0 0 chr6 138098393 138098439 -11418598 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1638 256 311 58 10 chr6 138098447 138098551 -11418486 - RSINE1 SINE B4 -55 110 2 1 1638 723 296 13 13 chr6 138098752 138098978 -11418059 + B4 SINE B4 1 226 -66 1 1638 1304 61 17 10 chr6 138099816 138100407 -11416630 + (TCTA)n Simple_repeat Simple_repeat 1 595 0 1 1638 798 258 152 40 chr6 138103107 138103357 -11413680 + B4 SINE B4 2 279 -13 1 1638 372 77 0 0 chr6 138103912 138103964 -11413073 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1638 365 198 12 0 chr6 138105370 138105451 -11411586 - B2_Mm2 SINE B2 -112 83 2 1 1638 2783 170 94 29 chr6 138105933 138106581 -11410456 - RMER6C LTR ERVK 0 690 1 1 1638 22 0 0 0 chr6 138107307 138107329 -11409708 + AT_rich Low_complexity Low_complexity 1 22 0 1 1638 533 294 18 18 chr6 138108090 138108253 -11408784 + RSINE1 SINE B4 3 165 0 1 1638 782 229 21 0 chr6 138108297 138108441 -11408596 + B1_Mur4 SINE Alu 3 149 -1 1 1638 295 340 0 39 chr6 138108903 138109007 -11408030 + Cheshire DNA MER1_type 174 273 -2147 1 1638 321 305 42 24 chr6 138110702 138110870 -11406167 + MER58D DNA MER1_type 22 192 -194 1 1638 433 47 31 0 chr6 138110884 138110948 -11406089 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1638 520 179 8 8 chr6 138110959 138111077 -11405960 + GA-rich Low_complexity Low_complexity 3 120 0 1 1638 285 264 9 36 chr6 138111077 138111187 -11405850 + B1_Mm SINE Alu 41 147 0 1 1638 650 224 0 29 chr6 138112241 138112379 -11404658 + B4 SINE B4 64 197 -95 1 1638 756 118 0 0 chr6 138112441 138112568 -11404469 + (CA)n Simple_repeat Simple_repeat 2 128 0 1 1638 522 105 28 40 chr6 138113939 138114190 -11402847 + (TG)n Simple_repeat Simple_repeat 1 247 0 1 1638 383 279 20 7 chr6 138114386 138114534 -11402503 + (TA)n Simple_repeat Simple_repeat 1 150 0 1 1638 715 196 91 11 chr6 138114581 138114756 -11402281 + L1MC5 LINE L1 7043 7231 -730 1 1638 2062 231 198 51 chr6 138114857 138116001 -11401036 - RMER1A Other Other -2 1028 15 1 1638 480 48 0 0 chr6 138116507 138116570 -11400467 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1638 419 264 108 30 chr6 138116714 138116917 -11400120 - ID_B1 SINE B4 -2 222 4 1 1638 258 81 0 0 chr6 138117068 138117105 -11399932 + (TCC)n Simple_repeat Simple_repeat 1 37 0 1 1638 1487 201 41 3 chr6 138117111 138117430 -11399607 - Lx LINE L1 -3 6651 6321 1 1638 1079 174 0 0 chr6 138117430 138117597 -11399440 + Lx LINE L1 6102 6268 -386 1 1638 180 0 0 0 chr6 138118331 138118351 -11398686 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1638 1135 95 0 0 chr6 138118351 138118498 -11398539 - B1_Mm SINE Alu 0 147 1 1 1638 522 304 43 34 chr6 138118499 138118734 -11398303 + MTEb LTR MaLR 143 379 0 1 1638 566 255 44 13 chr6 138119448 138119607 -11397430 + RSINE1 SINE B4 2 165 0 1 1638 411 21 0 0 chr6 138119638 138119686 -11397351 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1638 266 0 0 29 chr6 138120042 138120077 -11396960 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 1 1638 432 123 0 0 chr6 138120791 138120864 -11396173 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1638 591 279 134 39 chr6 138120872 138121103 -11395934 - B4 SINE B4 -18 274 22 1 1638 647 294 112 31 chr6 138121278 138121598 -11395439 - ORR1E LTR MaLR -6 353 8 1 1638 2074 77 24 3 chr6 138122529 138122816 -11394221 - L1_Mus3 LINE L1 -4 6634 6342 1 1638 379 271 21 7 chr6 138122834 138122979 -11394058 + (TA)n Simple_repeat Simple_repeat 1 147 0 1 1638 232 288 27 0 chr6 138123174 138123247 -11393790 + B4 SINE B4 4 78 -214 1 1638 615 27 0 0 chr6 138123447 138123520 -11393517 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1638 838 291 91 76 chr6 138123535 138123998 -11393039 - L1MB2 LINE L1 -132 6039 5582 1 1638 1065 68 7 14 chr6 138123998 138124009 -11393028 - B1_Mm SINE Alu 0 147 137 2 1638 1081 118 6 6 chr6 138124009 138124188 -11392849 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 1638 1065 68 7 14 chr6 138124188 138124324 -11392713 - B1_Mm SINE Alu -11 136 1 2 1638 838 301 98 57 chr6 138124324 138124709 -11392328 - L1MB2 LINE L1 -590 5581 5167 1 1638 544 262 83 6 chr6 138124798 138124967 -11392070 + MTEb LTR MaLR 1 182 -197 2 1638 21 57 0 0 chr6 138125086 138125121 -11391916 + AT_rich Low_complexity Low_complexity 1 35 0 2 1638 282 328 104 22 chr6 138125537 138125939 -11391098 + L1M5 LINE L1 2666 3100 -3046 2 1638 788 310 81 35 chr6 138125950 138126294 -11390743 + Lx8 LINE L1 6856 7215 -258 2 1638 188 122 0 24 chr6 138126299 138126341 -11390696 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 2 1638 38985 42 0 3 chr6 138126492 138132988 -11384049 - L1Md_T LINE L1 0 6585 14 2 1638 216 360 79 0 chr6 138133057 138133171 -11383866 + MIR SINE MIR 140 262 0 2 1638 252 0 0 0 chr6 138133242 138133270 -11383767 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 2 1638 503 101 13 0 chr6 138133272 138133351 -11383686 + (TTCC)n Simple_repeat Simple_repeat 4 83 0 2 1638 312 135 0 19 chr6 138133351 138133392 -11383645 + polypyrimidine Low_complexity Low_complexity 13 53 0 2 1638 1509 6 0 0 chr6 138133392 138133562 -11383475 + (TTTCC)n Simple_repeat Simple_repeat 4 173 0 2 1638 312 135 0 19 chr6 138133562 138133573 -11383464 + polypyrimidine Low_complexity Low_complexity 2 12 0 2 1638 975 63 0 0 chr6 138133573 138133700 -11383337 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 2 1638 923 267 48 96 chr6 138133814 138134212 -11382825 + MTEa LTR MaLR 1 379 0 2 1638 191 284 0 98 chr6 138134514 138134596 -11382441 + L2c LINE L2 3314 3387 0 2 1638 310 266 72 86 chr6 138134872 138135024 -11382013 - RMER15 LTR ERVL -1 574 425 2 1638 1792 130 3 27 chr6 138135344 138135667 -11381370 - RLTR10E LTR ERVK 0 390 1 2 1638 904 15 74 22 chr6 138135834 138135969 -11381068 - BC1_Mm scRNA scRNA -10 142 1 2 1638 322 271 61 30 chr6 138136341 138136440 -11380597 - PB1D10 SINE Alu -13 104 3 2 1638 513 32 0 0 chr6 138136615 138136678 -11380359 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1638 273 315 39 52 chr6 138137037 138137191 -11379846 + RMER1B Other Other 1 152 -914 2 1638 476 325 57 37 chr6 138137363 138137642 -11379395 + RMER1C Other Other 269 673 -669 2 1638 783 261 108 16 chr6 138137887 138138136 -11378901 + RMER1C Other Other 1071 1342 0 2 1638 241 250 48 23 chr6 138138146 138138242 -11378795 - B1F1 SINE Alu 0 149 46 2 1638 269 315 102 8 chr6 138138567 138138695 -11378342 - RMER1C Other Other -559 783 644 2 1638 380 294 94 17 chr6 138138809 138138989 -11378048 + RMER30 DNA MER1_type 8 201 -1 2 1638 364 365 42 0 chr6 138138993 138139182 -11377855 - MER2 DNA MER2_type -137 208 12 2 1638 221 159 119 60 chr6 138139343 138139410 -11377627 + ID2 SINE ID 11 81 -2 2 1638 592 280 42 21 chr6 138139363 138139553 -11377484 + B4A SINE B4 39 232 -60 2 1638 258 105 0 0 chr6 138139699 138139737 -11377300 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1638 243 79 0 0 chr6 138140067 138140105 -11376932 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1638 597 80 0 0 chr6 138141246 138141334 -11375703 + (TATG)n Simple_repeat Simple_repeat 2 89 0 2 1638 740 190 7 7 chr6 138141950 138142093 -11374944 + B1_Mur1 SINE Alu 1 143 -6 2 1638 230 193 53 0 chr6 138142093 138142150 -11374887 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 2 1638 6550 67 22 13 chr6 138142193 138143052 -11373985 + L1_Mus2 LINE L1 5700 6566 0 2 1638 659 272 14 67 chr6 138143577 138143786 -11373251 + B3A SINE B2 1 198 0 2 1638 33 0 0 0 chr6 138144387 138144420 -11372617 + AT_rich Low_complexity Low_complexity 1 33 0 2 1638 438 328 61 0 chr6 138144421 138144552 -11372485 - ID_B1 SINE B4 -5 219 81 2 1638 23 33 0 0 chr6 138144568 138144598 -11372439 + AT_rich Low_complexity Low_complexity 1 30 0 2 1638 360 220 0 0 chr6 138145204 138145322 -11371715 + (TG)n Simple_repeat Simple_repeat 1 118 0 2 1638 216 0 0 0 chr6 138145445 138145469 -11371568 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1638 14544 87 9 18 chr6 138145488 138145814 -11371223 - L1VL2 LINE L1 -577 3038 2716 2 1638 396 0 0 0 chr6 138145814 138145858 -11371179 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1638 14544 91 50 13 chr6 138145858 138148395 -11368642 - L1VL2 LINE L1 -900 2715 65 2 1638 700 176 140 10 chr6 138148401 138148608 -11368429 - Lx9 LINE L1 -1 7643 7410 2 1638 350 351 72 26 chr6 138148611 138148763 -11368274 - B4A SINE B4 -60 232 74 2 1638 248 314 101 55 chr6 138149295 138149558 -11367479 + B4 SINE B4 35 270 -22 2 1639 818 270 141 42 chr6 138150336 138150785 -11366252 - L1MEc LINE L1 -5670 730 230 2 1639 1122 185 36 14 chr6 138150785 138151004 -11366033 - URR1B DNA MER1_type 0 225 2 2 1639 818 270 141 42 chr6 138151004 138151127 -11365910 - L1MEc LINE L1 -6171 229 101 2 1639 378 182 116 91 chr6 138151237 138151319 -11365718 + RMER20B LTR ERVK 1 95 -532 2 1639 3475 28 5 0 chr6 138151319 138151713 -11365324 + MTA_Mm LTR MaLR 1 396 0 2 1639 378 194 90 116 chr6 138151713 138151789 -11365248 + RMER20B LTR ERVK 96 158 -358 2 1639 788 259 104 2 chr6 138151930 138152191 -11364846 + RMER20B LTR ERVK 147 431 -85 2 1639 450 0 0 0 chr6 138153991 138154041 -11362996 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1639 476 252 114 0 chr6 138154210 138154333 -11362704 - ID_B1 SINE B4 0 224 88 2 1639 4080 48 2 6 chr6 138154484 138154985 -11362052 - L1Md_F3 LINE L1 0 6584 6086 2 1639 186 324 113 0 chr6 138156050 138156121 -11360916 + L2a LINE L2 3348 3426 0 2 1639 509 273 80 17 chr6 138156924 138157099 -11359938 + B4A SINE B4 1 186 -106 2 1639 1852 221 45 12 chr6 138157136 138157540 -11359497 - MTC LTR MaLR -2 419 3 2 1639 4787 192 110 27 chr6 138157542 138158703 -11358334 - MTC-int LTR MaLR 0 1258 1 2 1639 2081 173 16 58 chr6 138158705 138159010 -11358027 - MTC LTR MaLR -8 413 120 2 1639 1117 95 0 13 chr6 138159010 138159159 -11357878 + B1_Mm SINE Alu 1 147 0 2 1639 243 0 0 0 chr6 138159167 138159194 -11357843 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1639 2081 173 16 58 chr6 138159194 138159308 -11357729 - MTC LTR MaLR -302 119 3 2 1639 448 284 85 61 chr6 138159870 138160117 -11356920 - MLT-int LTR MaLR -8 1727 1475 2 1639 3190 73 42 7 chr6 138160122 138160606 -11356431 + RLTR1C LTR ERV1 1 587 0 2 1639 613 362 72 28 chr6 138160617 138160935 -11356102 - MLT-int LTR MaLR -294 1441 1110 2 1639 537 55 0 0 chr6 138160978 138161051 -11355986 + (TCCA)n Simple_repeat Simple_repeat 4 76 0 2 1639 477 352 105 55 chr6 138161443 138161902 -11355135 - MLT-int LTR MaLR -1002 733 252 2 1639 292 336 42 0 chr6 138162506 138162625 -11354412 + B3 SINE B2 88 211 -5 2 1639 236 175 34 34 chr6 138162865 138162924 -11354113 + CT-rich Low_complexity Low_complexity 1 59 0 2 1639 543 337 6 6 chr6 138162947 138163123 -11353914 - ID_B1 SINE B4 -22 202 27 2 1639 1896 308 126 16 chr6 138163384 138164295 -11352742 - Lx8 LINE L1 -31 7442 6432 2 1639 251 209 75 0 chr6 138164356 138164423 -11352614 + L1_Mur1 LINE L1 5243 5314 -572 2 1639 21 0 0 0 chr6 138164538 138164559 -11352478 + AT_rich Low_complexity Low_complexity 1 21 0 2 1639 32154 24 0 7 chr6 138164582 138170770 -11346267 - L1Md_T LINE L1 -2 6580 436 2 1639 3364 37 110 2 chr6 138171444 138171873 -11345164 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1639 308 0 37 37 chr6 138172349 138172403 -11344634 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 2 1639 502 294 26 52 chr6 138172536 138172577 -11344460 - RSINE1 SINE B4 0 165 125 2 1639 966 135 0 0 chr6 138172577 138172755 -11344282 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 1639 502 294 26 52 chr6 138172755 138172867 -11344170 - RSINE1 SINE B4 -41 124 16 2 1639 21 0 0 0 chr6 138173013 138173034 -11344003 + AT_rich Low_complexity Low_complexity 1 21 0 2 1639 1462 230 16 70 chr6 138173318 138173537 -11343500 + ORR1D2 LTR MaLR 1 208 -162 2 1639 2416 148 44 29 chr6 138173537 138173735 -11343302 + RMER6B LTR ERVK 1 201 -260 2 1639 186 71 0 0 chr6 138173735 138173763 -11343274 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 2 1639 2416 148 44 29 chr6 138173763 138174017 -11343020 + RMER6B LTR ERVK 202 459 -2 2 1639 1462 230 16 70 chr6 138174017 138174166 -11342871 + ORR1D2 LTR MaLR 209 349 -21 2 1639 404 150 12 0 chr6 138174225 138174305 -11342732 + CT-rich Low_complexity Low_complexity 2 82 0 2 1639 1187 319 45 8 chr6 138174353 138174754 -11342283 - MLT2B4 LTR ERVL -69 487 72 2 1639 605 230 6 0 chr6 138174764 138174942 -11342095 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1639 657 0 0 0 chr6 138174962 138175035 -11342002 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2 1639 264 241 0 33 chr6 138175040 138175100 -11341937 - MLT2B4 LTR ERVL -481 75 18 2 1639 348 88 0 0 chr6 138176024 138176081 -11340956 + (TCTCTG)n Simple_repeat Simple_repeat 1 57 0 2 1639 627 284 99 42 chr6 138177854 138178258 -11338779 - RMER15 LTR ERVL 0 575 25 2 1639 287 359 8 32 chr6 138178332 138178473 -11338564 - MIRc SINE MIR -107 155 18 2 1639 823 262 38 9 chr6 138179195 138179407 -11337630 - ID_B1 SINE B4 -6 218 1 2 1639 369 0 0 0 chr6 138179908 138179949 -11337088 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1639 215 167 48 10 chr6 138179952 138180055 -11336982 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 2 1639 4664 40 7 3 chr6 138180156 138180730 -11336307 + L1Md_F2 LINE L1 6007 6582 0 2 1639 279 71 0 0 chr6 138181816 138181858 -11335179 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 2 1639 576 42 0 0 chr6 138182015 138182086 -11334951 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1639 180 0 0 0 chr6 138182202 138182222 -11334815 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2 1639 528 368 41 15 chr6 138182222 138182418 -11334619 - B3A SINE B2 -14 202 2 2 1639 952 244 92 21 chr6 138182759 138182880 -11334157 - Lx8 LINE L1 -10 7463 7343 2 1639 546 16 0 0 chr6 138182880 138182943 -11334094 + (TATG)n Simple_repeat Simple_repeat 2 64 0 2 1639 952 244 92 21 chr6 138182943 138183148 -11333889 - Lx8 LINE L1 -131 7342 7115 2 1639 671 244 92 20 chr6 138183173 138183466 -11333571 - L1MC1 LINE L1 -385 5948 5635 2 1639 444 307 59 31 chr6 138183697 138183919 -11333118 - L1MEg LINE L1 -3529 2617 2390 2 1639 246 273 16 24 chr6 138184007 138184131 -11332906 - L1MEg LINE L1 -4065 2177 2055 2 1639 718 335 30 0 chr6 138184210 138184407 -11332630 - B3 SINE B2 -13 203 1 2 1639 279 0 0 0 chr6 138184699 138184730 -11332307 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1639 310 272 224 0 chr6 138184737 138184884 -11332153 - L1MEg LINE L1 -4606 1636 1457 2 1639 509 149 105 11 chr6 138185046 138185141 -11331896 + B1_Mur1 SINE Alu 40 143 -6 2 1639 389 324 188 55 chr6 138185153 138185408 -11331629 - LTR16B1 LTR ERVL -163 317 29 2 1639 462 36 0 0 chr6 138185690 138185746 -11331291 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1639 657 296 115 60 chr6 138186762 138186925 -11330112 - ORR1E LTR MaLR -1 358 180 3 1639 264 30 0 0 chr6 138186925 138186958 -11330079 + (CAA)n Simple_repeat Simple_repeat 2 34 0 3 1639 657 296 115 60 chr6 138186958 138187125 -11329912 - ORR1E LTR MaLR -180 179 11 3 1639 516 32 0 0 chr6 138187921 138187983 -11329054 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 3 1639 4060 89 28 2 chr6 138187989 138188554 -11328483 - L1_Mus2 LINE L1 0 6566 5987 3 1639 392 298 26 96 chr6 138188620 138188776 -11328261 - ORR1E LTR MaLR -157 202 58 3 1639 4075 99 5 4 chr6 138189144 138189704 -11327333 - L1_Mus3 LINE L1 -7 6631 6071 3 1639 3599 76 8 0 chr6 138189704 138190304 -11326733 + L1_Mus3 LINE L1 5475 6078 -560 3 1639 267 54 0 0 chr6 138190678 138190715 -11326322 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1639 233 29 29 0 chr6 138190784 138190818 -11326219 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1639 243 290 19 0 chr6 138191066 138191207 -11325830 + (TCCA)n Simple_repeat Simple_repeat 1 143 0 3 1639 450 114 0 0 chr6 138192919 138192989 -11324048 + (GA)n Simple_repeat Simple_repeat 2 71 0 3 1639 275 331 109 38 chr6 138193788 138194055 -11322982 + B4 SINE B4 1 286 -6 3 1639 1134 222 12 124 chr6 138194519 138194877 -11322160 + L1_Mur2 LINE L1 893 1219 -6509 3 1639 315 0 0 0 chr6 138194877 138194912 -11322125 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1639 1200 172 1 27 chr6 138194912 138195177 -11321860 + L1_Mur2 LINE L1 1196 1458 -4419 3 1639 247 160 39 20 chr6 138195563 138195614 -11321423 - RSINE1 SINE B4 -36 129 78 3 1639 289 294 20 0 chr6 138195773 138195875 -11321162 + CT-rich Low_complexity Low_complexity 2 105 0 3 1639 471 311 8 0 chr6 138195877 138196009 -11321028 - ID_B1 SINE B4 -1 223 91 3 1639 297 0 0 0 chr6 138196094 138196127 -11320910 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1639 614 230 7 20 chr6 138196384 138196535 -11320502 + ORR1D2 LTR MaLR 1 149 -221 3 1639 1732 202 60 20 chr6 138196549 138196952 -11320085 + MTD LTR MaLR 1 419 0 3 1639 492 229 108 94 chr6 138197090 138197302 -11319735 + MT2A LTR ERVL 318 532 -1 3 1639 187 132 103 26 chr6 138197326 138197365 -11319672 - MIR SINE MIR -107 101 60 3 1639 32 26 0 0 chr6 138198031 138198070 -11318967 + AT_rich Low_complexity Low_complexity 1 39 0 3 1639 522 31 0 0 chr6 138198918 138198982 -11318055 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1639 621 40 0 0 chr6 138199601 138199677 -11317360 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 1639 564 15 0 0 chr6 138199850 138199915 -11317122 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1639 317 253 12 12 chr6 138201935 138202099 -11314938 + CT-rich Low_complexity Low_complexity 2 165 0 3 1639 686 343 25 3 chr6 138202106 138202332 -11314705 - ID_B1 SINE B4 -46 246 12 3 1639 965 0 26 0 chr6 138202552 138202667 -11314370 + (TATATG)n Simple_repeat Simple_repeat 6 123 0 3 1639 3084 73 0 2 chr6 138202667 138203067 -11313970 - MTB LTR MaLR -1 399 1 3 1639 427 359 26 42 chr6 138203126 138203315 -11313722 + B4A SINE B4 84 269 -23 3 1639 288 77 0 0 chr6 138203361 138203400 -11313637 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1639 760 80 34 28 chr6 138204302 138204481 -11312556 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1639 5763 155 32 8 chr6 138206010 138207478 -11309559 + Lx4B LINE L1 5185 6693 -365 3 1639 257 225 12 36 chr6 138207472 138207555 -11309482 + Lx4B LINE L1 6956 7036 -22 3 1639 246 32 0 0 chr6 138207555 138207586 -11309451 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 1639 183 80 0 0 chr6 138208173 138208198 -11308839 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 3 1639 467 219 6 17 chr6 138208205 138208386 -11308651 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 1639 459 52 0 0 chr6 138208398 138208456 -11308581 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1639 3125 51 8 8 chr6 138208463 138208859 -11308178 - MTA_Mm LTR MaLR 0 396 1 3 1639 375 60 0 0 chr6 138208862 138208912 -11308125 + (TATG)n Simple_repeat Simple_repeat 3 52 0 3 1639 262 128 0 0 chr6 138209618 138209657 -11307380 + MuLV-int LTR ERV1 1276 1314 -6292 3 1639 392 185 147 9 chr6 138209846 138209955 -11307082 + RLTR14-int LTR ERV1 1054 1177 -4140 3 1639 329 282 63 58 chr6 138210011 138210269 -11306768 + RLTR14-int LTR ERV1 1812 2203 -5575 3 1639 500 194 29 0 chr6 138210437 138210540 -11306497 + RLTR14-int LTR ERV1 1183 1288 -4029 3 1639 708 232 42 66 chr6 138210645 138210857 -11306180 + RLTR14-int LTR ERV1 1308 1514 -3803 3 1639 645 296 7 85 chr6 138210861 138211166 -11305871 + RLTR14-int LTR ERV1 1521 1740 -3577 3 1639 1183 266 6 26 chr6 138211208 138211521 -11305516 + RLTR14-int LTR ERV1 1743 2049 -3268 3 1639 1994 198 16 17 chr6 138211533 138211975 -11305062 + RLTR14-int LTR ERV1 2036 2417 -2900 3 1639 5830 195 36 32 chr6 138212042 138213374 -11303663 + RLTR14-int LTR ERV1 3153 4489 -828 3 1639 1701 200 6 8 chr6 138213582 138213935 -11303102 + RLTR14-int LTR ERV1 4485 4836 -481 3 1639 521 176 27 87 chr6 138213965 138214114 -11302923 + RLTR14-int LTR ERV1 5178 5317 0 3 1639 928 277 54 52 chr6 138214562 138214931 -11302106 + ORR1D2 LTR MaLR 1 370 0 3 1639 470 325 60 35 chr6 138215880 138216081 -11300956 + MER20 DNA MER1_type 12 217 -2 3 1639 218 346 12 0 chr6 138216092 138216173 -11300864 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 1639 385 305 16 78 chr6 138216761 138216851 -11300186 - ID_B1 SINE B4 -6 218 135 3 1639 1627 32 0 0 chr6 138216851 138217041 -11299996 - B2_Mm1t SINE B2 -2 191 2 3 1639 385 305 16 78 chr6 138217041 138217078 -11299959 - ID_B1 SINE B4 -90 134 99 3 1639 2983 220 29 52 chr6 138217263 138218025 -11299012 - RMER1C Other Other -1 1341 598 3 1639 1980 133 14 64 chr6 138218025 138218371 -11298666 - ORR1A4 LTR MaLR 0 329 1 3 1639 470 252 84 0 chr6 138218412 138218543 -11298494 - B1F1 SINE Alu -7 142 1 3 1639 5773 99 69 21 chr6 138219366 138220284 -11296753 + Lx3_Mus LINE L1 6040 7001 -8 3 1639 389 286 31 16 chr6 138221479 138221595 -11295442 + CT-rich Low_complexity Low_complexity 14 132 0 3 1639 982 130 6 6 chr6 138221595 138221773 -11295264 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 1639 389 286 31 16 chr6 138221773 138221784 -11295253 + polypyrimidine Low_complexity Low_complexity 3 13 0 3 1639 456 159 22 29 chr6 138221802 138221905 -11295132 + CT-rich Low_complexity Low_complexity 34 135 0 3 1639 1063 119 11 0 chr6 138221905 138222081 -11294956 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 1639 456 159 22 29 chr6 138222081 138222113 -11294924 + polypyrimidine Low_complexity Low_complexity 1 33 0 3 1639 239 330 10 50 chr6 138222121 138222220 -11294817 - ID_B1 SINE B4 -1 223 129 3 1639 210 45 83 62 chr6 138224146 138224194 -11292843 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 3 1639 1739 243 93 9 chr6 138224386 138224966 -11292071 + Lx6 LINE L1 6798 7696 0 3 1639 573 15 0 0 chr6 138225870 138225936 -11291101 + (TAAAA)n Simple_repeat Simple_repeat 5 70 0 3 1639 1294 258 35 35 chr6 138226142 138226484 -11290553 + ORR1E LTR MaLR 6 347 -12 3 1639 22 0 0 0 chr6 138226612 138226634 -11290403 + AT_rich Low_complexity Low_complexity 1 22 0 3 1639 765 306 42 48 chr6 138226672 138226888 -11290149 - B4A SINE B4 -1 291 72 3 1639 2502 191 45 65 chr6 138226888 138227460 -11289577 - RLTR31_Mm LTR ERVK 0 561 1 3 1639 765 306 42 48 chr6 138227460 138227532 -11289505 - B4A SINE B4 -221 71 5 3 1639 375 330 54 0 chr6 138227560 138227640 -11289397 + B1F1 SINE Alu 1 86 -63 3 1639 1495 242 90 8 chr6 138227640 138228027 -11289010 + MTD LTR MaLR 1 419 0 3 1639 323 323 38 8 chr6 138228268 138228399 -11288638 + L1MEd LINE L1 507 641 -5478 3 1639 281 26 26 0 chr6 138228525 138228563 -11288474 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 3 1639 520 314 21 7 chr6 138228590 138228731 -11288306 + RSINE1 SINE B4 4 146 -19 3 1639 576 106 0 0 chr6 138228734 138228819 -11288218 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 1639 595 287 163 8 chr6 138228908 138229154 -11287883 - B4 SINE B4 -8 284 1 3 1639 459 285 40 8 chr6 138229459 138229583 -11287454 - ID_B1 SINE B4 -10 214 87 3 1639 225 0 0 0 chr6 138230079 138230104 -11286933 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1639 245 244 85 0 chr6 138230496 138230578 -11286459 - LTR80B LTR ERVL -277 307 219 3 1639 592 264 57 52 chr6 138230674 138230866 -11286171 + B3A SINE B2 1 193 -5 3 1639 319 282 33 33 chr6 138231122 138231243 -11285794 + L1MEd LINE L1 2068 2188 -3961 3 1639 674 300 94 0 chr6 138231328 138231508 -11285529 + B3 SINE B2 3 199 -17 3 1639 7567 63 7 5 chr6 138232127 138233335 -11283702 - L1Md_F2 LINE L1 -12 6570 5359 3 1639 26 30 0 0 chr6 138233910 138233943 -11283094 + AT_rich Low_complexity Low_complexity 1 33 0 3 1639 840 238 23 65 chr6 138234283 138234499 -11282538 + B3 SINE B2 4 210 -6 3 1639 1751 115 68 101 chr6 138234663 138234918 -11282119 + ORR1A2 LTR MaLR 1 277 -50 3 1639 6013 38 0 7 chr6 138234918 138235602 -11281435 + L1Md_F2 LINE L1 5903 6581 -1 3 1639 1751 115 68 101 chr6 138235602 138235684 -11281353 + ORR1A2 LTR MaLR 278 327 0 3 1639 532 285 111 13 chr6 138236089 138236242 -11280795 - B4A SINE B4 -2 290 123 3 1639 921 264 9 5 chr6 138237470 138237691 -11279346 - ID_B1 SINE B4 -1 223 2 3 1639 236 211 98 22 chr6 138237733 138237825 -11279212 - Lx5 LINE L1 -881 6169 6071 3 1639 486 233 12 59 chr6 138237827 138238018 -11279019 + Lx5 LINE L1 6846 7054 -4 3 1639 655 289 64 78 chr6 138238183 138238401 -11278636 - B4A SINE B4 -18 274 60 3 1639 750 171 55 41 chr6 138238612 138238758 -11278279 + B1_Mur1 SINE Alu 1 148 -1 3 1639 633 61 0 0 chr6 138238758 138238840 -11278197 + (GA)n Simple_repeat Simple_repeat 1 82 0 3 1639 438 36 0 0 chr6 138238840 138238896 -11278141 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 3 1639 770 194 29 0 chr6 138240833 138240972 -11276065 + B1_Mur3 SINE Alu 7 149 0 3 1639 311 203 14 0 chr6 138240983 138241057 -11275980 + GA-rich Low_complexity Low_complexity 3 77 0 3 1639 1242 106 5 5 chr6 138241054 138241386 -11275651 + (GAAA)n Simple_repeat Simple_repeat 1 332 0 3 1639 1083 139 0 0 chr6 138241386 138241566 -11275471 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3 1639 1054 114 11 11 chr6 138241566 138241590 -11275447 + (GAAA)n Simple_repeat Simple_repeat 1 23 0 3 1639 519 209 0 0 chr6 138241592 138241707 -11275330 + GA-rich Low_complexity Low_complexity 3 117 0 3 1639 1227 97 0 0 chr6 138241708 138241884 -11275153 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 3 1639 1170 80 6 11 chr6 138241896 138242074 -11274963 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 3 1639 196 293 216 20 chr6 138242350 138242503 -11274534 + MER5A DNA MER1_type 1 183 -6 3 1639 610 293 168 32 chr6 138242510 138242760 -11274277 + B4A SINE B4 1 284 -8 3 1639 480 48 0 0 chr6 138242786 138242849 -11274188 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1639 534 247 168 6 chr6 138243314 138243481 -11273556 + B3A SINE B2 4 197 -1 4 1639 963 242 0 0 chr6 138243519 138243713 -11273324 + B3 SINE B2 2 195 -21 4 1639 241 273 0 15 chr6 138243715 138243782 -11273255 + MTEb LTR MaLR 314 379 0 4 1639 240 35 0 0 chr6 138244603 138244632 -11272405 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1639 718 274 205 7 chr6 138244946 138245244 -11271793 + Lx8 LINE L1 7113 7469 -4 4 1639 652 261 7 15 chr6 138245263 138245399 -11271638 + B3 SINE B2 3 137 -79 4 1639 26 30 0 0 chr6 138245539 138245572 -11271465 + AT_rich Low_complexity Low_complexity 1 33 0 4 1639 744 256 30 30 chr6 138246159 138246356 -11270681 - B3A SINE B2 0 198 2 4 1639 1029 48 137 0 chr6 138246935 138247081 -11269956 - ORR1A1 LTR MaLR -180 166 1 4 1639 13141 73 52 2 chr6 138247081 138248787 -11268250 - ORR1A1-int LTR MaLR 0 1792 1 4 1639 2805 46 65 0 chr6 138248787 138249112 -11267925 - ORR1A1 LTR MaLR 0 346 1 4 1639 812 322 61 0 chr6 138249293 138249554 -11267483 + B4A SINE B4 1 277 -15 4 1639 405 0 0 0 chr6 138249558 138249603 -11267434 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1639 494 297 18 27 chr6 138249853 138250033 -11267004 + B3A SINE B2 1 182 -34 4 1639 318 50 0 0 chr6 138250748 138250788 -11266249 + (TTCTC)n Simple_repeat Simple_repeat 1 40 0 4 1639 1410 56 0 0 chr6 138250788 138250968 -11266069 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 4 1639 396 0 0 0 chr6 138250987 138251031 -11266006 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 4 1639 261 0 0 0 chr6 138251226 138251255 -11265782 + (CCCCAG)n Simple_repeat Simple_repeat 1 29 0 4 1639 516 345 0 0 chr6 138251506 138251648 -11265389 - ID_B1 SINE B4 -1 223 82 4 1639 510 311 50 28 chr6 138251958 138252176 -11264861 - ID_B1 SINE B4 0 224 2 4 1639 22 35 0 0 chr6 138254259 138254288 -11262749 + AT_rich Low_complexity Low_complexity 1 29 0 4 1639 24 0 0 0 chr6 138254376 138254400 -11262637 + AT_rich Low_complexity Low_complexity 1 24 0 4 1639 426 20 0 0 chr6 138255058 138255109 -11261928 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1639 782 103 7 0 chr6 138255109 138255244 -11261793 + (GA)n Simple_repeat Simple_repeat 2 138 0 4 1639 416 212 248 0 chr6 138255310 138255423 -11261614 + B1_Mur1 SINE Alu 2 142 -7 4 1639 412 262 163 65 chr6 138256065 138256159 -11260878 - ORR1D2 LTR MaLR 0 370 266 4 1639 3186 80 5 15 chr6 138256159 138256563 -11260474 + MTB LTR MaLR 1 400 0 4 1639 412 269 162 67 chr6 138256563 138256680 -11260357 - ORR1D2 LTR MaLR -110 274 154 4 1639 1202 288 131 21 chr6 138256728 138257256 -11259781 - Lx8 LINE L1 -185 7288 6703 4 1639 452 357 76 45 chr6 138257981 138258204 -11258833 - MER102b DNA MER1_type -2 339 110 4 1639 278 287 69 0 chr6 138258233 138258320 -11258717 - LTR40b LTR ERVL -2 460 368 4 1639 513 0 0 0 chr6 138258824 138258881 -11258156 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1639 303 269 131 20 chr6 138259254 138259441 -11257596 - L1MA6 LINE L1 0 6300 6094 4 1639 2506 50 7 7 chr6 138259481 138259784 -11257253 - L1Md_F3 LINE L1 -1 6583 6281 4 1639 328 302 28 9 chr6 138259796 138259903 -11257134 - B1F SINE Alu -38 111 3 4 1639 1141 269 81 24 chr6 138260945 138261280 -11255757 - MTEa LTR MaLR -23 356 3 4 1639 296 288 150 0 chr6 138261938 138262091 -11254946 - ORR1E LTR MaLR -168 191 16 4 1639 2138 182 27 2 chr6 138262216 138262617 -11254420 + MTC LTR MaLR 3 413 -8 4 1639 459 336 37 75 chr6 138262898 138263059 -11253978 - B3A SINE B2 0 198 44 4 1639 1685 211 70 23 chr6 138263157 138263555 -11253482 - MTC LTR MaLR 0 421 5 4 1639 535 295 64 64 chr6 138263695 138263898 -11253139 - B3 SINE B2 -9 207 5 4 1639 21 0 0 0 chr6 138265126 138265147 -11251890 + AT_rich Low_complexity Low_complexity 1 21 0 4 1639 355 308 150 25 chr6 138265383 138265503 -11251534 - B1_Mur2 SINE Alu -13 136 2 4 1639 261 338 0 111 chr6 138266062 138266152 -11250885 + ID SINE ID 3 82 -142 4 1639 1050 273 8 20 chr6 138266222 138266476 -11250561 + MTE2b LTR MaLR 92 342 -37 4 1639 212 338 89 89 chr6 138266497 138266643 -11250394 + B1F2 SINE Alu 4 149 0 4 1639 269 352 13 49 chr6 138267222 138267388 -11249649 - MIRb SINE MIR -90 172 19 4 1639 2706 55 65 0 chr6 138267737 138268062 -11248975 - ORR1A1 LTR MaLR 0 346 1 4 1639 466 214 0 0 chr6 138268160 138268249 -11248788 + PB1D7 SINE Alu 32 120 0 4 1639 332 325 29 64 chr6 138268789 138268960 -11248077 - MamRep605 Unknown Unknown -96 780 616 4 1639 256 335 121 36 chr6 138269070 138269376 -11247661 - MamRep605 Unknown Unknown -525 351 20 4 1639 615 27 0 0 chr6 138269477 138269550 -11247487 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1639 384 59 0 0 chr6 138270287 138270338 -11246699 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1639 441 0 0 0 chr6 138270490 138270539 -11246498 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1639 213 250 52 13 chr6 138270977 138271054 -11245983 - L3 LINE CR1 -984 3505 3426 4 1639 204 40 0 0 chr6 138271586 138271611 -11245426 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 4 1639 234 0 0 0 chr6 138272359 138272385 -11244652 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1639 531 0 0 0 chr6 138272813 138272872 -11244165 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1639 180 0 0 0 chr6 138273142 138273162 -11243875 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 4 1639 897 79 0 0 chr6 138273389 138273516 -11243521 + (TC)n Simple_repeat Simple_repeat 2 128 0 4 1639 459 0 0 0 chr6 138274537 138274588 -11242449 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1639 615 168 0 0 chr6 138274588 138274731 -11242306 + GA-rich Low_complexity Low_complexity 1 143 0 4 1639 215 281 0 0 chr6 138274732 138274789 -11242248 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1639 215 186 46 35 chr6 138274789 138274962 -11242075 + (CAGAGA)n Simple_repeat Simple_repeat 6 180 0 4 1639 219 103 0 0 chr6 138274969 138275008 -11242029 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1639 579 29 0 0 chr6 138275008 138275076 -11241961 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1639 487 287 108 0 chr6 138275261 138275418 -11241619 - B4A SINE B4 -10 282 109 4 1639 755 245 68 29 chr6 138275763 138275969 -11241068 + B3 SINE B2 2 215 -1 4 1639 565 229 96 91 chr6 138276626 138276823 -11240214 - B3A SINE B2 0 198 1 4 1639 257 89 0 22 chr6 138277346 138277392 -11239645 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1639 198 0 0 0 chr6 138277439 138277461 -11239576 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1639 608 329 38 24 chr6 138277461 138277748 -11239289 - B4A SINE B4 0 292 2 4 1639 513 0 0 0 chr6 138280847 138280904 -11236133 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 204 245 348 108 58 chr6 138280919 138281160 -11235877 - B4 SINE B4 -12 280 28 4 1640 210 150 0 0 chr6 138282307 138282347 -11234690 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1640 203 81 54 0 chr6 138282424 138282461 -11234576 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 4 1640 428 143 12 0 chr6 138283057 138283141 -11233896 + GA-rich Low_complexity Low_complexity 1 85 0 4 1640 180 0 0 0 chr6 138283488 138283508 -11233529 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1640 221 290 0 0 chr6 138284494 138284556 -11232481 - L2b LINE L2 -6 3369 3308 4 1640 198 267 133 56 chr6 138284748 138284891 -11232146 - L2b LINE L2 -314 3073 2920 4 1640 1638 146 0 40 chr6 138285076 138285375 -11231662 + Lx5 LINE L1 6653 6939 -111 4 1640 441 313 13 0 chr6 138286219 138286369 -11230668 - ETnERV2-int LTR ERVK -760 6646 6495 4 1640 1264 42 42 0 chr6 138286836 138287003 -11230034 - RLTR13D5 LTR ERVK -559 464 291 4 1640 6087 152 66 72 chr6 138287025 138287203 -11229834 - RLTR45-int LTR ERVK -1173 6071 5914 4 1640 3120 42 0 10 chr6 138287203 138287588 -11229449 + L1Md_F2 LINE L1 6191 6571 -11 4 1640 6087 137 72 79 chr6 138287588 138288835 -11228202 - RLTR45-int LTR ERVK -1331 5913 4672 4 1640 3016 69 0 0 chr6 138288823 138289230 -11227807 - ETnERV2-int LTR ERVK -1644 5762 5356 4 1640 9993 136 29 6 chr6 138289228 138290935 -11226102 - ETnERV2-int LTR ERVK -2727 4679 2935 4 1640 735 205 132 12 chr6 138290961 138291200 -11225837 - ETnERV2-int LTR ERVK -2971 2837 2555 4 1640 625 183 25 0 chr6 138291213 138291333 -11225704 - RMER16-int LTR ERVK -5077 1060 938 4 1640 2180 154 143 39 chr6 138291338 138291850 -11225187 - RMER16-int LTR ERVK -4587 819 255 4 1640 428 176 9 29 chr6 138292870 138292975 -11224062 + Lx4B LINE L1 6952 7054 -4 4 1640 543 305 91 60 chr6 138293701 138293979 -11223058 - B4A SINE B4 0 292 1 4 1640 316 302 83 70 chr6 138294566 138294808 -11222229 + L3b LINE CR1 1 245 -237 4 1640 241 366 0 26 chr6 138294986 138295101 -11221936 - ID2 SINE ID -40 112 1 4 1640 952 151 157 28 chr6 138295706 138296134 -11220903 - Lx4B LINE L1 -1 7057 6541 4 1640 3104 199 62 7 chr6 138296152 138296826 -11220211 + Lx4B LINE L1 6300 7010 -48 4 1640 2466 166 56 6 chr6 138296835 138297323 -11219714 + Lx4B LINE L1 6024 6520 -538 4 1640 579 283 103 7 chr6 138297328 138297506 -11219531 - B3 SINE B2 0 216 20 4 1640 873 124 0 0 chr6 138298256 138298417 -11218620 + (CA)n Simple_repeat Simple_repeat 1 161 0 4 1640 209 189 0 0 chr6 138298543 138298580 -11218457 + CT-rich Low_complexity Low_complexity 2 38 0 4 1640 714 280 9 9 chr6 138298707 138298923 -11218114 - B3 SINE B2 0 216 1 4 1640 1233 52 17 0 chr6 138298967 138299141 -11217896 + (CA)n Simple_repeat Simple_repeat 1 177 0 4 1640 855 222 17 15 chr6 138299193 138299389 -11217648 - B3 SINE B2 -10 206 6 4 1640 21 0 0 0 chr6 138299879 138299900 -11217137 + AT_rich Low_complexity Low_complexity 1 21 0 4 1640 28 29 0 0 chr6 138299947 138299982 -11217055 + AT_rich Low_complexity Low_complexity 1 35 0 4 1640 633 27 0 0 chr6 138300937 138301012 -11216025 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 4 1640 1076 48 21 0 chr6 138301020 138301165 -11215872 + (GGGAGA)n Simple_repeat Simple_repeat 3 150 0 4 1640 338 314 158 58 chr6 138301460 138301720 -11215317 - B4 SINE B4 -5 287 2 4 1640 609 301 12 24 chr6 138301807 138301977 -11215060 - ID_B1 SINE B4 -7 217 50 4 1640 717 12 0 0 chr6 138302198 138302280 -11214757 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1640 558 261 15 8 chr6 138302287 138302418 -11214619 - B3A SINE B2 -48 150 19 5 1640 4391 76 0 0 chr6 138302479 138303086 -11213951 - L1_Mm LINE L1 -921 4962 4356 5 1640 549 265 280 19 chr6 138303095 138303354 -11213683 - MTEa LTR MaLR -52 327 1 5 1640 223 161 36 0 chr6 138303530 138303586 -11213451 + GA-rich Low_complexity Low_complexity 4 61 0 5 1640 405 265 24 89 chr6 138304065 138304189 -11212848 + RSINE1 SINE B4 2 117 -48 5 1640 528 16 0 0 chr6 138304265 138304326 -11212711 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1640 636 75 0 43 chr6 138305057 138305197 -11211840 + (TTTTG)n Simple_repeat Simple_repeat 2 135 0 5 1640 228 100 0 0 chr6 138306122 138306162 -11210875 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1640 344 284 11 0 chr6 138306199 138306294 -11210743 + (TG)n Simple_repeat Simple_repeat 1 96 0 5 1640 257 68 23 0 chr6 138306459 138306503 -11210534 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 5 1640 7295 68 0 6 chr6 138306605 138307594 -11209443 - L1Md_F2 LINE L1 -2 6580 5598 5 1640 204 40 0 0 chr6 138307647 138307672 -11209365 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 5 1640 404 253 133 46 chr6 138307703 138307898 -11209139 - B3 SINE B2 0 216 5 5 1640 741 127 12 25 chr6 138308670 138308831 -11208206 + CT-rich Low_complexity Low_complexity 2 160 0 5 1640 699 268 32 18 chr6 138308868 138309085 -11207952 - ID_B1 SINE B4 -4 220 1 5 1640 276 310 0 45 chr6 138310851 138310939 -11206098 + L2b LINE L2 3272 3355 -20 5 1640 22 35 0 0 chr6 138311683 138311712 -11205325 + AT_rich Low_complexity Low_complexity 1 29 0 5 1640 288 0 0 0 chr6 138313128 138313160 -11203877 + (TAA)n Simple_repeat Simple_repeat 2 33 0 5 1640 1361 104 0 5 chr6 138314824 138315018 -11202019 + B2_Mm2 SINE B2 1 193 -2 5 1640 405 0 0 0 chr6 138315467 138315512 -11201525 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1640 729 291 117 19 chr6 138317724 138317990 -11199047 + B4A SINE B4 1 292 0 5 1640 495 0 0 0 chr6 138318030 138318085 -11198952 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1640 606 254 16 26 chr6 138319258 138319448 -11197589 - Lx9 LINE L1 -196 7448 7261 5 1640 260 111 85 12 chr6 138319452 138319594 -11197443 + (TA)n Simple_repeat Simple_repeat 1 152 0 5 1640 646 290 38 68 chr6 138319760 138320052 -11196985 - B4 SINE B4 -8 284 2 5 1640 585 292 7 20 chr6 138320330 138320477 -11196560 + RSINE1 SINE B4 16 160 -5 5 1640 387 0 0 0 chr6 138320543 138320586 -11196451 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1640 224 224 20 0 chr6 138320887 138320936 -11196101 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1640 322 370 20 0 chr6 138321141 138321241 -11195796 - RSINE1 SINE B4 -14 151 50 5 1640 499 324 22 14 chr6 138321287 138321425 -11195612 - B4A SINE B4 -83 209 71 5 1640 327 275 42 36 chr6 138321431 138321575 -11195462 + B1F SINE Alu 5 149 0 5 1640 363 96 0 0 chr6 138323079 138323131 -11193906 + (CTG)n Simple_repeat Simple_repeat 2 53 0 5 1640 364 278 50 30 chr6 138323131 138323231 -11193806 - PB1D10 SINE Alu -9 108 7 5 1640 192 335 72 50 chr6 138323954 138324113 -11192924 - MIRb SINE MIR -92 176 6 5 1640 526 295 22 0 chr6 138324323 138324462 -11192575 - B1_Mur2 SINE Alu -6 143 2 5 1640 292 311 28 10 chr6 138324625 138324750 -11192287 - MIR SINE MIR -126 142 15 5 1640 240 86 0 0 chr6 138324964 138324999 -11192038 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1640 201 221 0 0 chr6 138325023 138325091 -11191946 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1640 391 341 84 34 chr6 138325151 138325436 -11191601 - B4 SINE B4 0 292 6 5 1640 183 80 0 0 chr6 138326493 138326518 -11190519 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1640 505 308 0 16 chr6 138327324 138327446 -11189591 + ID_B1 SINE B4 84 203 -21 5 1640 424 289 0 0 chr6 138327627 138327724 -11189313 - PB1D10 SINE Alu -20 97 1 5 1640 330 336 0 43 chr6 138327629 138327744 -11189293 - ID_B1 SINE B4 -48 176 67 5 1640 324 0 0 0 chr6 138328005 138328041 -11188996 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1640 252 0 0 0 chr6 138332531 138332559 -11184478 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 5 1640 329 324 49 0 chr6 138332722 138332824 -11184213 + B4A SINE B4 1 107 -185 5 1640 246 194 0 173 chr6 138332873 138332948 -11184089 + B4A SINE B4 231 292 0 5 1640 180 200 0 0 chr6 138332971 138333016 -11184021 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1640 243 79 0 0 chr6 138333022 138333060 -11183977 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 5 1640 352 244 0 0 chr6 138333694 138333772 -11183265 + ID4_ SINE ID 5 82 -1 5 1640 201 121 0 0 chr6 138334677 138334710 -11182327 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 5 1640 423 0 0 0 chr6 138335514 138335561 -11181476 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1640 24 0 0 0 chr6 138338170 138338194 -11178843 + AT_rich Low_complexity Low_complexity 1 24 0 5 1640 327 261 64 98 chr6 138338195 138338399 -11178638 - B3A SINE B2 -1 197 1 5 1640 385 326 63 42 chr6 138339081 138339270 -11177767 - MIRb SINE MIR -8 260 68 5 1640 798 241 40 10 chr6 138341925 138342126 -11174911 + B3 SINE B2 6 212 -4 5 1640 258 192 0 0 chr6 138342176 138342228 -11174809 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 5 1640 324 0 0 0 chr6 138343009 138343045 -11173992 + (TCC)n Simple_repeat Simple_repeat 1 36 0 5 1640 562 281 25 39 chr6 138343275 138343479 -11173558 + B3 SINE B2 1 201 -15 5 1640 307 132 0 19 chr6 138343486 138343540 -11173497 + HAL1-3A_ME LINE L1 1976 2028 -830 5 1640 596 138 9 0 chr6 138343540 138343656 -11173381 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 1640 180 111 0 0 chr6 138344375 138344402 -11172635 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1640 690 299 74 10 chr6 138345308 138345511 -11171526 + B3 SINE B2 1 216 0 5 1640 198 209 0 0 chr6 138345643 138345686 -11171351 + A-rich Low_complexity Low_complexity 1 43 0 5 1640 911 121 0 7 chr6 138346749 138346899 -11170138 + (TTTC)n Simple_repeat Simple_repeat 1 149 0 5 1640 1305 83 0 0 chr6 138346916 138347096 -11169941 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1640 263 164 57 9 chr6 138347097 138347202 -11169835 + CT-rich Low_complexity Low_complexity 1 110 0 5 1640 233 247 41 0 chr6 138347260 138347333 -11169704 - PB1D10 SINE Alu -8 109 34 5 1640 1534 249 70 14 chr6 138347381 138347765 -11169272 + MTD LTR MaLR 3 379 -40 5 1640 236 145 55 25 chr6 138348898 138349061 -11167976 + (TA)n Simple_repeat Simple_repeat 2 169 0 5 1640 456 331 82 6 chr6 138349300 138349482 -11167555 + B4A SINE B4 4 199 -93 5 1640 341 246 123 59 chr6 138349508 138349767 -11167270 + HAL1-3A_ME LINE L1 2283 2438 -420 5 1640 636 14 0 0 chr6 138349768 138349841 -11167196 + (GA)n Simple_repeat Simple_repeat 1 73 0 5 1640 22 0 0 0 chr6 138351669 138351691 -11165346 + AT_rich Low_complexity Low_complexity 1 22 0 5 1640 695 236 10 77 chr6 138351725 138351932 -11165105 - B3A SINE B2 -3 195 3 5 1640 22 0 0 0 chr6 138352799 138352821 -11164216 + AT_rich Low_complexity Low_complexity 1 22 0 5 1640 248 247 8 101 chr6 138352971 138353071 -11163966 + PB1D7 SINE Alu 1 95 -54 5 1640 180 0 0 0 chr6 138353122 138353142 -11163895 + (TTA)n Simple_repeat Simple_repeat 2 21 0 5 1640 844 282 24 0 chr6 138353230 138353436 -11163601 + ID_B1 SINE B4 12 222 -2 5 1640 404 19 0 19 chr6 138353441 138353495 -11163542 + (TAA)n Simple_repeat Simple_repeat 2 54 0 5 1640 34 42 0 0 chr6 138353563 138353611 -11163426 + AT_rich Low_complexity Low_complexity 1 48 0 5 1640 200 35 35 0 chr6 138354032 138354061 -11162976 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 5 1640 779 210 9 14 chr6 138354311 138354489 -11162548 + B3 SINE B2 8 186 -12 5 1640 513 0 0 0 chr6 138354759 138354816 -11162221 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1640 474 18 0 0 chr6 138354816 138354870 -11162167 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1640 597 53 0 31 chr6 138355884 138355981 -11161056 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 1640 351 119 0 0 chr6 138356524 138356591 -11160446 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1640 21 71 0 0 chr6 138356850 138356892 -11160145 + AT_rich Low_complexity Low_complexity 1 42 0 5 1640 250 317 12 0 chr6 138357276 138357358 -11159679 - ID_B1 SINE B4 -55 169 87 5 1640 252 0 0 0 chr6 138360855 138360883 -11156154 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1640 198 103 0 0 chr6 138361772 138361801 -11155236 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1640 278 26 26 0 chr6 138362109 138362148 -11154889 + (CAAA)n Simple_repeat Simple_repeat 4 43 0 5 1640 270 0 0 0 chr6 138363171 138363201 -11153836 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1640 21 36 0 0 chr6 138363276 138363304 -11153733 + AT_rich Low_complexity Low_complexity 1 28 0 5 1640 1333 73 15 0 chr6 138365240 138365704 -11151333 + (TTCC)n Simple_repeat Simple_repeat 1 470 0 5 1640 862 113 0 14 chr6 138366602 138366746 -11150291 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 5 1640 201 196 0 21 chr6 138367138 138367185 -11149852 + A-rich Low_complexity Low_complexity 2 47 0 5 1640 26 0 0 0 chr6 138368435 138368461 -11148576 + AT_rich Low_complexity Low_complexity 1 26 0 5 1640 21 0 0 0 chr6 138368730 138368751 -11148286 + AT_rich Low_complexity Low_complexity 1 21 0 5 1640 21 0 0 0 chr6 138369441 138369462 -11147575 + AT_rich Low_complexity Low_complexity 1 21 0 5 1640 564 15 0 0 chr6 138370198 138370263 -11146774 + (TC)n Simple_repeat Simple_repeat 2 66 0 5 1640 209 176 39 19 chr6 138371436 138371488 -11145549 + CT-rich Low_complexity Low_complexity 4 56 0 6 1640 603 0 0 0 chr6 138371520 138371587 -11145450 + (TC)n Simple_repeat Simple_repeat 1 67 0 6 1640 371 21 0 20 chr6 138372763 138372812 -11144225 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 6 1640 285 29 0 0 chr6 138372816 138372850 -11144187 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 1640 252 0 0 0 chr6 138372850 138372877 -11144160 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1640 393 58 0 0 chr6 138373165 138373217 -11143820 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1640 321 26 0 0 chr6 138373272 138373310 -11143727 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1640 216 97 0 0 chr6 138373799 138373830 -11143207 + (GGGAGA)n Simple_repeat Simple_repeat 3 33 0 6 1640 369 0 0 0 chr6 138374108 138374149 -11142888 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1640 189 0 0 0 chr6 138374693 138374714 -11142323 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6 1640 207 0 0 0 chr6 138375753 138375776 -11141261 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1640 333 0 0 0 chr6 138377642 138377679 -11139358 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1640 1158 172 0 0 chr6 138378565 138379015 -11138022 + (TA)n Simple_repeat Simple_repeat 1 450 0 6 1640 636 189 15 15 chr6 138380188 138380322 -11136715 - B3 SINE B2 -79 137 4 6 1640 580 157 0 54 chr6 138380366 138380460 -11136577 + polypyrimidine Low_complexity Low_complexity 76 160 0 6 1640 1005 74 0 0 chr6 138380460 138380595 -11136442 + (TTTC)n Simple_repeat Simple_repeat 4 138 0 6 1640 580 157 0 54 chr6 138380595 138380668 -11136369 + polypyrimidine Low_complexity Low_complexity 3 75 0 6 1640 800 164 0 6 chr6 138380667 138380826 -11136211 + CT-rich Low_complexity Low_complexity 4 161 0 6 1640 376 282 94 31 chr6 138380831 138380959 -11136078 - RSINE1 SINE B4 -15 150 15 6 1640 322 292 40 93 chr6 138381535 138381686 -11135351 - B1_Mur1 SINE Alu -6 143 1 6 1640 868 214 20 50 chr6 138382100 138382302 -11134735 - B3 SINE B2 -17 199 4 6 1640 409 257 6 6 chr6 138382353 138382533 -11134504 + CT-rich Low_complexity Low_complexity 1 180 0 6 1640 603 84 0 0 chr6 138382534 138382629 -11134408 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 6 1640 21 36 0 0 chr6 138383056 138383084 -11133953 + AT_rich Low_complexity Low_complexity 1 28 0 6 1640 239 236 7 0 chr6 138383289 138383355 -11133682 - B1_Mur3 SINE Alu -6 143 44 6 1640 572 228 0 32 chr6 138383387 138383573 -11133464 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1640 381 345 29 74 chr6 138383729 138384108 -11132929 - L1MC4 LINE L1 -67 7975 7614 6 1640 269 210 16 0 chr6 138384209 138384271 -11132766 + MER3 DNA MER1_type 135 197 -12 6 1640 251 302 57 23 chr6 138384339 138384427 -11132610 + PB1D10 SINE Alu 6 96 -21 6 1640 201 132 26 0 chr6 138384719 138384730 -11132307 + (TCTCTG)n Simple_repeat Simple_repeat 6 16 0 6 1640 275 71 24 0 chr6 138384730 138384772 -11132265 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1640 201 132 26 0 chr6 138384772 138384798 -11132239 + (TCTCTG)n Simple_repeat Simple_repeat 3 29 0 6 1640 297 299 175 17 chr6 138384800 138384977 -11132060 - ID_B1 SINE B4 -8 216 12 6 1640 330 300 29 20 chr6 138385088 138385190 -11131847 + MIRm SINE MIR 174 276 0 6 1640 215 147 0 0 chr6 138385949 138385983 -11131054 + MIR3 SINE MIR 154 187 -21 6 1640 495 182 91 0 chr6 138385993 138386092 -11130945 + MamRep434 DNA TcMar 30 137 -289 6 1640 286 288 128 25 chr6 138386609 138386805 -11130232 + B3 SINE B2 1 216 0 6 1640 1284 81 0 0 chr6 138387500 138387747 -11129290 + (TG)n Simple_repeat Simple_repeat 1 247 0 6 1640 723 248 23 8 chr6 138387753 138387918 -11129119 - B3A SINE B2 -32 161 2 6 1640 267 379 48 9 chr6 138387922 138388090 -11128947 - MIR SINE MIR -69 199 27 6 1640 1403 40 0 6 chr6 138388397 138388574 -11128463 - L1_Mus2 LINE L1 -1 6565 6390 6 1640 4560 79 0 9 chr6 138388575 138389210 -11127827 + L1_Mm LINE L1 4868 5496 -387 6 1640 379 297 177 20 chr6 138389621 138389756 -11127281 - L1M3 LINE L1 -1336 4807 4645 6 1640 693 45 0 0 chr6 138389756 138389845 -11127192 + (CA)n Simple_repeat Simple_repeat 2 90 0 6 1640 379 281 157 6 chr6 138389845 138389990 -11127047 - L1M3 LINE L1 -1490 4650 4482 6 1640 279 0 0 0 chr6 138390015 138390046 -11126991 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1640 1063 309 37 17 chr6 138390048 138390531 -11126506 - L1_Mur3 LINE L1 -1643 4237 3745 6 1640 780 197 7 20 chr6 138390552 138390702 -11126335 - B1_Mur2 SINE Alu 0 149 2 6 1640 341 349 52 48 chr6 138390705 138390934 -11126103 - L1M3 LINE L1 -2357 3786 3557 6 1640 283 204 0 0 chr6 138391000 138391054 -11125983 + L1MA5A LINE L1 4884 4937 -1203 6 1640 555 16 0 0 chr6 138391059 138391123 -11125914 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1640 336 233 169 0 chr6 138391136 138391241 -11125796 - Lx2B LINE L1 -116 6860 6718 6 1640 790 191 60 35 chr6 138391358 138391559 -11125478 - Lx2B LINE L1 -275 6725 6520 6 1640 242 279 58 11 chr6 138391545 138391632 -11125405 + Lx4B LINE L1 6960 7050 -8 6 1640 531 88 53 0 chr6 138391677 138391790 -11125247 + (TA)n Simple_repeat Simple_repeat 1 119 0 6 1640 410 322 32 23 chr6 138391792 138392011 -11125026 + L1MA5A LINE L1 5000 5220 -923 6 1640 286 338 20 34 chr6 138392048 138392195 -11124842 + L1M4 LINE L1 5361 5505 -673 6 1640 2695 28 0 0 chr6 138392265 138392591 -11124446 + IAPEY2_LTR LTR ERVK 32 357 0 6 1640 587 258 13 54 chr6 138392597 138392840 -11124197 + L1MA5A LINE L1 5586 5860 -437 6 1640 348 316 66 0 chr6 138393117 138393253 -11123784 - B1F1 SINE Alu -4 145 1 6 1640 278 305 30 38 chr6 138393597 138393730 -11123307 - ID_B1 SINE B4 0 224 93 6 1640 266 290 74 74 chr6 138393730 138393746 -11123291 - B1F1 SINE Alu 0 149 1 6 1640 375 331 49 7 chr6 138393745 138393888 -11123149 - B1F SINE Alu 0 149 1 6 1640 315 286 43 43 chr6 138394031 138394192 -11122845 + RSINE1 SINE B4 3 163 -2 6 1640 542 342 40 7 chr6 138394275 138394552 -11122485 - B4A SINE B4 -3 289 4 6 1640 1214 286 51 37 chr6 138394683 138395057 -11121980 + MTE2b LTR MaLR 1 379 0 6 1640 1205 118 16 21 chr6 138396002 138396193 -11120844 - B2_Mm2 SINE B2 -4 191 2 6 1640 856 218 65 60 chr6 138396972 138397187 -11119850 + B3 SINE B2 1 216 0 6 1640 203 175 0 0 chr6 138397525 138397565 -11119472 + T-rich Low_complexity Low_complexity 1 40 0 6 1640 306 0 0 0 chr6 138398621 138398655 -11118382 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1640 508 307 17 6 chr6 138398745 138398922 -11118115 - B3A SINE B2 -18 180 2 6 1640 22 0 0 0 chr6 138399203 138399225 -11117812 + AT_rich Low_complexity Low_complexity 1 22 0 6 1640 379 48 16 16 chr6 138399358 138399421 -11117616 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1640 348 305 63 88 chr6 138400136 138400341 -11116696 - B4A SINE B4 -82 210 11 6 1640 271 257 0 13 chr6 138401057 138401117 -11115920 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1640 2819 50 72 13 chr6 138401117 138401505 -11115532 + IAPLTR2a LTR ERVK 1 411 0 6 1640 436 249 13 5 chr6 138401505 138401742 -11115295 + (CA)n Simple_repeat Simple_repeat 1 238 0 6 1640 270 0 0 0 chr6 138401774 138401804 -11115233 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1640 542 237 15 8 chr6 138403346 138403478 -11113559 - B1F2 SINE Alu -4 145 13 6 1640 513 127 22 22 chr6 138403747 138403884 -11113153 + (TG)n Simple_repeat Simple_repeat 1 137 0 6 1640 387 268 129 7 chr6 138403892 138404031 -11113006 - RSINE1 SINE B4 0 165 10 6 1640 393 22 0 0 chr6 138404206 138404252 -11112785 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1640 2068 282 92 68 chr6 138404303 138405250 -11111787 + RCHARR1 DNA MER1_type 3 972 -2 6 1640 561 319 30 74 chr6 138406699 138406902 -11110135 - B3A SINE B2 0 195 2 6 1640 2649 185 187 30 chr6 138407356 138407850 -11109187 - Lx6 LINE L1 -1026 6434 5835 6 1640 450 0 0 0 chr6 138407850 138407900 -11109137 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1640 2649 185 187 30 chr6 138407900 138408106 -11108931 - Lx6 LINE L1 -1626 5834 5624 6 1640 1863 222 41 39 chr6 138408064 138408547 -11108490 + Lx6 LINE L1 6409 6892 -568 6 1640 341 330 96 42 chr6 138409296 138409536 -11107501 - L1ME1 LINE L1 -249 5930 5678 6 1640 2462 209 19 13 chr6 138409706 138410248 -11106789 + RCHARR1 DNA MER1_type 429 973 -1 6 1640 360 329 25 119 chr6 138410893 138411128 -11105909 + L1MCa LINE L1 1593 1805 -4703 6 1640 523 266 117 37 chr6 138411259 138411815 -11105222 + L1MCa LINE L1 1968 2567 -3754 6 25 897 316 61 37 chr6 138411844 138412326 -11104711 + L1MA6 LINE L1 5301 5796 -504 6 1641 396 40 0 0 chr6 138412326 138412376 -11104661 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1641 897 316 61 37 chr6 138412376 138412515 -11104522 + L1MA6 LINE L1 5797 5937 -363 6 1641 541 321 107 19 chr6 138412611 138413135 -11103902 + L1MCa LINE L1 2562 3131 -3190 6 1641 701 282 145 42 chr6 138413170 138414101 -11102936 + L1MCa LINE L1 3247 4275 -2046 6 1641 369 269 39 0 chr6 138414555 138414659 -11102378 - MTE2b LTR MaLR 0 379 272 6 1641 967 264 120 69 chr6 138414663 138414994 -11102043 - MTD LTR MaLR -14 393 45 6 1641 531 229 24 32 chr6 138414994 138415061 -11101976 + MT2A LTR ERVL 1 67 -466 6 1641 405 0 0 0 chr6 138415061 138415106 -11101931 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1641 531 229 24 32 chr6 138415106 138415164 -11101873 + MT2A LTR ERVL 68 125 -408 6 1641 591 230 52 45 chr6 138415157 138415338 -11101699 + MT2A LTR ERVL 85 426 -175 6 1641 875 273 26 89 chr6 138415313 138415615 -11101422 - MTE2b LTR MaLR -93 286 4 6 1641 1741 166 152 6 chr6 138415640 138415968 -11101069 - ORR1B1 LTR MaLR -4 390 15 6 1641 318 264 53 12 chr6 138415970 138416011 -11101026 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 6 1641 1528 181 207 14 chr6 138416011 138416364 -11100673 + MTC LTR MaLR 1 421 0 6 1641 318 264 53 12 chr6 138416364 138416491 -11100546 + (TCTA)n Simple_repeat Simple_repeat 2 134 0 6 1641 1071 274 56 29 chr6 138417739 138418081 -11098956 - ORR1E LTR MaLR -2 357 7 6 1641 1635 134 93 36 chr6 138418089 138418477 -11098560 - RMER17C LTR ERVK 0 410 1 6 1641 659 245 0 26 chr6 138418500 138418651 -11098386 - B1_Mus1 SINE Alu 0 148 2 6 1641 191 298 0 66 chr6 138418959 138419020 -11098017 - L2 LINE L2 -675 2744 2688 6 1641 907 153 188 10 chr6 138419309 138419501 -11097536 + URR1A DNA MER1_type 1 226 0 6 1641 304 318 85 23 chr6 138419967 138420144 -11096893 + L1MC5 LINE L1 7610 7797 -164 6 1641 22 35 0 0 chr6 138420714 138420743 -11096294 + AT_rich Low_complexity Low_complexity 1 29 0 7 1641 189 0 0 0 chr6 138420822 138420843 -11096194 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1641 1082 75 0 13 chr6 138420846 138420995 -11096042 - B1_Mus2 SINE Alu 0 147 1 7 1641 433 301 57 29 chr6 138421247 138421387 -11095650 + B1F SINE Alu 1 144 -5 7 1641 26 30 0 0 chr6 138421537 138421570 -11095467 + AT_rich Low_complexity Low_complexity 1 33 0 7 1641 233 200 63 0 chr6 138425809 138425904 -11091133 + (TA)n Simple_repeat Simple_repeat 1 101 0 7 1641 330 87 0 0 chr6 138426654 138426700 -11090337 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1641 205 186 0 0 chr6 138426737 138426780 -11090257 + A-rich Low_complexity Low_complexity 5 47 0 7 1641 300 382 36 7 chr6 138426864 138427001 -11090036 - L3b LINE CR1 -18 464 324 7 1641 399 303 30 8 chr6 138427843 138427976 -11089061 - B1F SINE Alu -10 139 4 7 1641 240 337 10 50 chr6 138428667 138428767 -11088270 + PB1D10 SINE Alu 15 110 -7 7 1641 371 272 12 15 chr6 138429025 138429146 -11087891 + B1_Mur1 SINE Alu 1 149 0 7 1641 276 126 52 52 chr6 138429147 138429281 -11087756 + (CAAAC)n Simple_repeat Simple_repeat 5 138 0 7 1641 1112 88 0 0 chr6 138429320 138429456 -11087581 + B1_Mus2 SINE Alu 1 136 -11 7 1641 380 20 20 0 chr6 138429456 138429505 -11087532 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 7 1641 584 139 6 50 chr6 138429533 138429715 -11087322 + A-rich Low_complexity Low_complexity 2 175 0 7 1641 37 69 0 0 chr6 138429775 138429847 -11087190 + AT_rich Low_complexity Low_complexity 1 72 0 7 1641 245 347 45 26 chr6 138430702 138430856 -11086181 - B4 SINE B4 0 292 136 7 1641 21 0 0 0 chr6 138430888 138430909 -11086128 + AT_rich Low_complexity Low_complexity 1 21 0 7 1641 895 294 10 72 chr6 138432029 138432429 -11084608 - MTE2a LTR MaLR -2 377 3 7 1641 26 30 0 0 chr6 138433548 138433581 -11083456 + AT_rich Low_complexity Low_complexity 1 33 0 7 1641 200 399 149 12 chr6 138433834 138434075 -11082962 + L2 LINE L2 2012 2285 -1134 7 1641 454 274 52 88 chr6 138434188 138434216 -11082821 - B2_Mm2 SINE B2 -10 185 160 7 1641 192 125 0 0 chr6 138434216 138434248 -11082789 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1641 563 274 52 88 chr6 138434248 138434411 -11082626 - B3A SINE B2 -36 159 1 7 1641 205 316 39 26 chr6 138434454 138434532 -11082505 + L2 LINE L2 2378 2456 -963 7 1641 207 69 0 0 chr6 138434653 138434682 -11082355 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1641 198 288 30 15 chr6 138435005 138435072 -11081965 + L2 LINE L2 2981 3048 -371 7 1641 615 158 7 14 chr6 138435426 138435574 -11081463 + (CA)n Simple_repeat Simple_repeat 1 147 0 7 1641 681 290 14 63 chr6 138435731 138435952 -11081085 - B3A SINE B2 -6 210 1 7 1641 537 298 71 22 chr6 138437761 138437943 -11079094 - B3A SINE B2 -2 196 6 7 1641 4098 15 0 2 chr6 138438090 138438561 -11078476 + L1Md_A LINE L1 6113 6582 0 7 1641 237 65 0 0 chr6 138438700 138438731 -11078306 + (TTTAG)n Simple_repeat Simple_repeat 2 32 0 7 1641 744 255 39 10 chr6 138439064 138439270 -11077767 - B3 SINE B2 -3 213 2 7 1641 391 318 0 62 chr6 138439426 138439587 -11077450 - MIR SINE MIR 0 262 112 7 1641 566 276 82 11 chr6 138439606 138439623 -11077414 - B4A SINE B4 -6 286 270 7 1641 429 95 0 0 chr6 138439623 138439686 -11077351 + (TG)n Simple_repeat Simple_repeat 1 63 0 7 1641 566 276 82 11 chr6 138439686 138439851 -11077186 - B4A SINE B4 -23 269 91 7 1641 543 271 36 56 chr6 138440767 138440899 -11076138 + L1M3 LINE L1 4069 4192 -1948 7 1641 420 20 0 0 chr6 138440899 138440948 -11076089 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 7 1641 543 271 36 56 chr6 138440948 138441065 -11075972 + L1M3 LINE L1 4193 4313 -1827 7 1641 243 287 101 50 chr6 138441078 138441177 -11075860 + ID_B1 SINE B4 81 184 -40 7 1641 257 276 0 50 chr6 138441100 138441180 -11075857 + MT2B2 LTR ERVL 187 262 -322 7 1641 1010 319 86 23 chr6 138441226 138441955 -11075082 + L1M3 LINE L1 4313 5087 -1053 7 1641 368 302 104 33 chr6 138442121 138442333 -11074704 + ORSL DNA Tip100 11 237 -38 7 1641 624 280 48 32 chr6 138442743 138442931 -11074106 + B3A SINE B2 20 210 -6 7 1641 357 24 0 0 chr6 138444356 138444398 -11072639 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1641 451 320 107 57 chr6 138444429 138444691 -11072346 - B4A SINE B4 -16 276 2 7 1641 333 257 45 18 chr6 138445903 138446014 -11071023 + PB1D10 SINE Alu 4 117 0 7 1641 213 147 13 39 chr6 138446328 138446406 -11070631 + T-rich Low_complexity Low_complexity 1 76 0 7 1641 442 333 20 78 chr6 138447055 138447208 -11069829 + RSINE1 SINE B4 21 164 -1 7 1641 276 53 0 0 chr6 138447235 138447273 -11069764 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1641 665 73 10 0 chr6 138447291 138447387 -11069650 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 7 1641 243 45 0 62 chr6 138447543 138447591 -11069446 + (TTA)n Simple_repeat Simple_repeat 1 45 0 7 1641 248 320 13 0 chr6 138447593 138447671 -11069366 - MLT1J1 LTR MaLR -114 330 252 7 1641 416 299 49 38 chr6 138448380 138448564 -11068473 - B3A SINE B2 -12 186 1 7 1641 441 0 0 0 chr6 138449969 138450018 -11067019 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1641 1493 146 4 40 chr6 138450094 138450366 -11066671 - Lx LINE L1 0 6654 6393 7 1641 4039 120 57 0 chr6 138450366 138450981 -11066056 + Lx LINE L1 5769 6418 -236 7 1641 229 299 44 53 chr6 138450997 138451110 -11065927 - PB1D7 SINE Alu -3 117 6 7 1641 649 315 17 0 chr6 138451014 138451192 -11065845 - B4A SINE B4 -105 187 7 7 1641 3280 142 85 20 chr6 138451206 138451818 -11065219 - Lx2B LINE L1 -5 6995 6344 7 1641 569 89 0 0 chr6 138452211 138452290 -11064747 + MusHAL1 LINE L1 1450 1528 -1184 7 1641 201 309 71 0 chr6 138452773 138452857 -11064180 - MIRb SINE MIR -96 172 83 7 1641 459 232 88 16 chr6 138453742 138453897 -11063140 - B3A SINE B2 -18 177 2 7 1641 693 319 110 4 chr6 138454355 138454619 -11062418 - B4A SINE B4 0 292 1 7 1641 291 292 22 11 chr6 138455932 138456022 -11061015 - B4 SINE B4 -199 93 3 7 1641 1821 107 20 20 chr6 138456047 138456342 -11060695 - Lx4A LINE L1 -915 6143 5849 7 1641 1902 101 4 4 chr6 138456342 138456611 -11060426 + RMER17D2 LTR ERVK 1 269 -540 7 1641 7936 36 1 9 chr6 138456611 138457570 -11059467 - L1Md_F2 LINE L1 -12 6570 5620 7 1641 2702 126 7 86 chr6 138457570 138458178 -11058859 + RMER17D2 LTR ERVK 250 809 0 7 1641 566 136 0 1 chr6 138458179 138458269 -11058768 - Lx4A LINE L1 -1205 5853 5763 7 1641 5078 153 30 16 chr6 138458269 138459164 -11057873 + Lx4A LINE L1 6148 7055 -3 7 1641 329 239 25 58 chr6 138459164 138459193 -11057844 - Lx4A LINE L1 -1934 5762 5735 7 1641 331 219 41 32 chr6 138459185 138459308 -11057729 - Lx9 LINE L1 0 7644 7521 7 1641 237 248 118 22 chr6 138459308 138459444 -11057593 + Lx9 LINE L1 7369 7517 -127 7 1641 349 161 85 12 chr6 138459497 138459579 -11057458 - HAL1-3A_ME LINE L1 -831 2027 1940 7 1641 23 33 0 0 chr6 138460661 138460691 -11056346 + AT_rich Low_complexity Low_complexity 1 30 0 7 1641 27 0 0 0 chr6 138460799 138460826 -11056211 + AT_rich Low_complexity Low_complexity 1 27 0 7 1641 415 302 9 0 chr6 138460827 138460933 -11056104 + PB1D10 SINE Alu 1 107 -10 7 1641 182 365 112 45 chr6 138461739 138461917 -11055120 - MIRb SINE MIR -52 216 27 7 1641 233 98 0 24 chr6 138462006 138462048 -11054989 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1641 23 33 0 0 chr6 138462479 138462509 -11054528 + AT_rich Low_complexity Low_complexity 1 30 0 7 1641 414 0 0 0 chr6 138462819 138462865 -11054172 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1641 411 318 91 52 chr6 138466243 138466495 -11050542 - MIRb SINE MIR 0 268 7 7 1641 355 268 157 93 chr6 138467331 138467631 -11049406 - ORR1E LTR MaLR -40 319 1 7 1641 210 368 42 17 chr6 138467907 138468026 -11049011 - L2 LINE L2 -454 2965 2844 7 1641 264 170 0 0 chr6 138468504 138468557 -11048480 + GA-rich Low_complexity Low_complexity 2 54 0 7 1641 1462 77 5 0 chr6 138470414 138470623 -11046414 + L1_Mus2 LINE L1 6356 6565 -1 7 1641 771 289 66 3 chr6 138470836 138471161 -11045876 + MTE2a LTR MaLR 8 379 0 7 1641 305 345 23 78 chr6 138471349 138471478 -11045559 - Tigger7 DNA MER2_type -24 2467 2346 7 1641 373 341 23 0 chr6 138471869 138471998 -11045039 + Tigger7 DNA MER2_type 346 477 -2014 7 1641 320 299 9 18 chr6 138472135 138472244 -11044793 + CT-rich Low_complexity Low_complexity 2 109 0 7 1641 190 289 10 109 chr6 138472900 138473001 -11044036 - L2c LINE L2 -20 3367 3277 7 1641 432 123 0 0 chr6 138473318 138473391 -11043646 + (TA)n Simple_repeat Simple_repeat 2 74 0 7 1641 180 0 0 0 chr6 138473754 138473774 -11043263 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1641 361 337 105 0 chr6 138475141 138475322 -11041715 - Lx8 LINE L1 -349 7124 6925 7 1641 1101 47 0 0 chr6 138475679 138475827 -11041210 + (CA)n Simple_repeat Simple_repeat 2 149 0 7 1641 24 0 0 0 chr6 138476233 138476257 -11040780 + AT_rich Low_complexity Low_complexity 1 24 0 7 1641 363 192 0 0 chr6 138476295 138476373 -11040664 + (TA)n Simple_repeat Simple_repeat 1 78 0 7 1641 413 317 0 18 chr6 138476378 138476548 -11040489 + (CATA)n Simple_repeat Simple_repeat 4 170 0 7 1641 5712 144 45 20 chr6 138477668 138478666 -11038371 + RLTR13D2 LTR ERVK 1 1023 0 7 1641 288 158 0 0 chr6 138478902 138478959 -11038078 + GA-rich Low_complexity Low_complexity 1 57 0 7 1641 430 159 36 18 chr6 138479039 138479205 -11037832 + (TCTA)n Simple_repeat Simple_repeat 4 172 0 7 1641 1217 34 29 5 chr6 138479231 138479444 -11037593 + (TCTA)n Simple_repeat Simple_repeat 1 218 0 7 1641 399 41 0 0 chr6 138479691 138479740 -11037297 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1641 365 0 22 0 chr6 138479740 138479784 -11037253 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 1641 291 332 11 1 chr6 138480908 138481013 -11036024 - MTEa LTR MaLR 0 379 275 7 1641 432 0 0 0 chr6 138481098 138481146 -11035891 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1641 1138 82 0 0 chr6 138481795 138481942 -11035095 + B1_Mm SINE Alu 1 147 0 7 1641 339 136 0 0 chr6 138481997 138482056 -11034981 + (CCA)n Simple_repeat Simple_repeat 1 59 0 7 1641 439 311 74 12 chr6 138482564 138482727 -11034310 - MTEb LTR MaLR -6 373 201 7 1641 299 287 10 0 chr6 138482876 138482977 -11034060 - MLT2B4 LTR ERVL -454 102 1 8 1641 795 116 0 0 chr6 138483029 138483150 -11033887 + (TTCC)n Simple_repeat Simple_repeat 3 123 0 8 1641 2825 66 0 3 chr6 138483150 138483516 -11033521 - L1_Mus1 LINE L1 -6 6561 6197 8 1641 6367 82 0 22 chr6 138484202 138485112 -11031925 + L1Md_F2 LINE L1 3378 4267 -1616 8 1641 3120 42 3 0 chr6 138485110 138485488 -11031549 + L1Md_F2 LINE L1 5199 5577 -306 8 1641 7846 53 1 10 chr6 138485488 138486488 -11030549 + L1Md_F2 LINE L1 5589 6579 -3 8 1641 25 51 0 0 chr6 138486488 138486527 -11030510 + AT_rich Low_complexity Low_complexity 1 39 0 8 1641 261 0 0 0 chr6 138487525 138487554 -11029483 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 1641 812 289 115 13 chr6 138487568 138487880 -11029157 - ORR1E LTR MaLR -1 358 15 8 1641 1480 28 0 0 chr6 138488010 138488191 -11028846 + L1Md_F2 LINE L1 6400 6580 -2 8 1641 302 143 16 0 chr6 138488681 138488744 -11028293 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1641 962 91 7 0 chr6 138489637 138489780 -11027257 + (TTCTC)n Simple_repeat Simple_repeat 2 145 0 8 1641 186 160 0 0 chr6 138490130 138490180 -11026857 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 8 1641 807 134 0 0 chr6 138490184 138490326 -11026711 + (TG)n Simple_repeat Simple_repeat 1 142 0 8 1641 189 107 0 0 chr6 138491193 138491221 -11025816 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 1641 1133 74 7 7 chr6 138491372 138491521 -11025516 - B1_Mur4 SINE Alu 0 150 2 8 1641 961 73 7 21 chr6 138491965 138492105 -11024932 - L1_Mus2 LINE L1 -355 6211 6074 8 1641 2352 100 17 0 chr6 138492105 138492454 -11024583 + L1_Mus2 LINE L1 6212 6566 0 8 1641 2282 54 0 29 chr6 138493031 138493386 -11023651 - L1Md_F3 LINE L1 0 6584 6273 8 1641 375 23 0 0 chr6 138493462 138493506 -11023531 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1641 399 323 22 15 chr6 138493993 138494128 -11022909 - ID_B1 SINE B4 -7 217 82 8 1641 622 228 381 23 chr6 138494214 138494524 -11022513 - MTC LTR MaLR 0 421 1 8 1641 209 33 0 32 chr6 138494680 138494711 -11022326 + (TA)n Simple_repeat Simple_repeat 1 30 0 8 1641 535 254 0 0 chr6 138496012 138496130 -11020907 - B3 SINE B2 -5 211 94 8 1641 267 267 40 0 chr6 138496435 138496510 -11020527 - ID4_ SINE ID -1 82 5 8 1641 194 306 0 20 chr6 138496855 138496905 -11020132 + L2c LINE L2 3273 3321 -66 8 1641 1776 262 48 19 chr6 138498150 138498693 -11018344 - Lx6 LINE L1 -26 7434 6500 8 1641 366 266 79 7 chr6 138498680 138498820 -11018217 + Lx6 LINE L1 6641 6790 -670 8 1641 37 93 0 0 chr6 138499245 138499352 -11017685 + AT_rich Low_complexity Low_complexity 1 107 0 8 1641 1025 299 0 59 chr6 138501310 138501715 -11015322 + Lx9 LINE L1 7137 7517 -127 1 1641 233 288 37 24 chr6 138502218 138502300 -11014737 + MTEa LTR MaLR 279 361 -18 2 1641 216 0 0 0 chr6 138503310 138503334 -11013703 + (TAA)n Simple_repeat Simple_repeat 1 24 0 3 1641 263 383 104 39 chr6 138503516 138503747 -11013290 - MER20B DNA MER1_type -523 260 15 4 1641 362 290 83 8 chr6 138504612 138504744 -11012293 - ID_B1 SINE B4 -3 221 80 5 1641 1477 152 53 14 chr6 138504862 138505143 -11011894 - Lx2 LINE L1 -2 6995 6704 6 1641 2443 116 11 0 chr6 138505143 138505521 -11011516 + Lx2 LINE L1 6309 6690 -307 6 1641 1990 98 20 30 chr6 138505605 138505910 -11011127 + L1Md_F2 LINE L1 6269 6570 -12 7 1641 1107 73 13 0 chr6 138506102 138506253 -11010784 - L1Md_F2 LINE L1 -13 6569 6417 8 1641 189 274 0 46 chr6 138506549 138506614 -11010423 + L3 LINE CR1 3917 3978 -511 9 1641 355 304 79 26 chr6 138506641 138506793 -11010244 - HAL1-3A_ME LINE L1 -417 2441 2282 1 1641 606 150 0 0 chr6 138508120 138508240 -11008797 + (TC)n Simple_repeat Simple_repeat 2 121 0 1 1641 420 20 0 0 chr6 138510837 138510886 -11006151 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1641 324 0 0 0 chr6 138510886 138510921 -11006116 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1641 24 0 0 0 chr6 138511387 138511411 -11005626 + AT_rich Low_complexity Low_complexity 1 24 0 1 1641 343 218 82 159 chr6 138512440 138512482 -11004555 - B2_Mm2 SINE B2 0 195 150 1 1641 522 98 0 0 chr6 138512482 138512564 -11004473 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1641 488 218 82 159 chr6 138512564 138512728 -11004309 - B3A SINE B2 -42 156 5 1 1641 309 353 101 12 chr6 138513555 138513724 -11003313 + L1MEc LINE L1 471 654 -5746 1 1641 410 287 45 18 chr6 138514142 138514252 -11002785 - PB1D10 SINE Alu -2 115 3 1 1641 307 356 40 0 chr6 138514326 138514475 -11002562 + L1MEc LINE L1 4043 4197 -2122 1 1641 292 301 53 21 chr6 138514476 138514666 -11002371 + L1_Mur3 LINE L1 94 289 -7439 1 1641 4679 215 23 51 chr6 138514697 138515901 -11001136 + L1_Mur3 LINE L1 862 2056 -3824 1 1641 209 98 24 0 chr6 138515901 138515942 -11001095 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1641 4679 202 25 45 chr6 138515942 138516503 -11000534 + L1_Mur3 LINE L1 2057 2582 -3298 1 1641 7897 191 102 21 chr6 138516518 138518528 -10998509 + L1_Mur3 LINE L1 3168 5349 -531 1 1641 3935 147 18 12 chr6 138518528 138519194 -10997843 + Lx2 LINE L1 6328 6997 0 2 1641 7897 191 102 21 chr6 138519194 138519282 -10997755 + L1_Mur3 LINE L1 5350 5436 -444 1 1641 990 140 37 20 chr6 138519925 138520330 -10996707 + (TCTA)n Simple_repeat Simple_repeat 1 411 0 2 1641 5172 108 9 14 chr6 138521050 138522579 -10994458 + L1Md_A LINE L1 405 1923 -3960 2 1641 383 250 103 0 chr6 138522586 138522702 -10994335 + MLT2B4 LTR ERVL 23 150 -406 2 1641 7748 49 4 1 chr6 138522702 138524229 -10992808 - L1Md_F2 LINE L1 -3 6579 5050 2 1641 650 58 0 0 chr6 138524223 138524310 -10992727 - L1Md_F2 LINE L1 -3602 2281 2195 2 1641 253 198 0 24 chr6 138524547 138524630 -10992407 + CT-rich Low_complexity Low_complexity 4 84 0 2 1641 208 121 0 0 chr6 138524650 138524683 -10992354 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1641 438 139 0 0 chr6 138524931 138525003 -10992034 + (A)n Simple_repeat Simple_repeat 1 72 0 2 1641 510 17 0 0 chr6 138525310 138525369 -10991668 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1641 4366 80 8 2 chr6 138525780 138526368 -10990669 + L1_Mus1 LINE L1 5975 6566 -1 3 1641 325 280 0 0 chr6 138526451 138526526 -10990511 + ID SINE ID 8 82 -142 3 1641 577 354 83 11 chr6 138526726 138526788 -10990249 - B4A SINE B4 0 292 231 3 1641 1489 99 18 5 chr6 138526788 138527010 -10990027 - Lx LINE L1 -3 6651 6427 3 1641 577 354 83 11 chr6 138527010 138527213 -10989824 - B4A SINE B4 -62 230 8 3 1641 306 0 0 0 chr6 138527306 138527340 -10989697 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1641 270 193 0 0 chr6 138528927 138528984 -10988053 + A-rich Low_complexity Low_complexity 1 57 0 3 1641 227 208 0 0 chr6 138529015 138529063 -10987974 + A-rich Low_complexity Low_complexity 1 48 0 3 1641 608 0 14 0 chr6 138530172 138530244 -10986793 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1641 276 30 0 0 chr6 138531028 138531061 -10985976 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1641 677 297 126 45 chr6 138534443 138534775 -10982262 + MTD LTR MaLR 42 377 -2 3 1641 21 36 0 0 chr6 138535014 138535042 -10981995 + AT_rich Low_complexity Low_complexity 1 28 0 3 1641 429 20 0 0 chr6 138537367 138537417 -10979620 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 1641 541 301 91 55 chr6 138537418 138537526 -10979511 - L1M2 LINE L1 -2541 3602 3506 4 1641 1219 116 16 6 chr6 138537526 138537708 -10979329 - B2_Mm2 SINE B2 -8 187 4 4 1641 541 301 91 55 chr6 138537708 138538284 -10978753 - L1M2 LINE L1 -2638 3505 2895 4 1641 550 318 4 63 chr6 138538541 138538779 -10978258 + Lx8 LINE L1 6229 6452 -1021 4 1641 815 281 0 5 chr6 138538783 138538983 -10978054 + Lx8 LINE L1 6566 6764 -709 4 1641 289 331 94 0 chr6 138539022 138539149 -10977888 + Lx8 LINE L1 7137 7275 -198 4 1641 342 0 0 0 chr6 138539331 138539369 -10977668 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1641 301 225 38 0 chr6 138539476 138539565 -10977472 - L1M2 LINE L1 -3458 2685 2590 4 1641 1640 317 53 19 chr6 138539573 138540243 -10976794 - Lx8 LINE L1 -487 6986 6287 4 1641 330 80 0 0 chr6 138540243 138540293 -10976744 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1641 1640 317 53 19 chr6 138540293 138540372 -10976665 - Lx8 LINE L1 -1187 6286 6211 4 1641 270 0 0 0 chr6 138540403 138540433 -10976604 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 4 1641 1181 65 0 0 chr6 138540435 138540588 -10976449 - B2_Mm2 SINE B2 -41 154 2 4 1641 607 333 66 8 chr6 138541063 138541320 -10975717 + B4A SINE B4 7 278 -14 4 1641 549 0 0 0 chr6 138541839 138541900 -10975137 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1642 274 294 35 0 chr6 138543468 138543553 -10973484 + B3A SINE B2 81 168 -30 5 1642 384 298 100 55 chr6 138543779 138543999 -10973038 - HAL1 LINE L1 -1166 1341 1112 5 1642 628 277 9 66 chr6 138544002 138544230 -10972807 - B3 SINE B2 0 216 2 5 1642 21 57 0 0 chr6 138544236 138544271 -10972766 + AT_rich Low_complexity Low_complexity 1 35 0 5 1642 363 44 0 0 chr6 138544395 138544440 -10972597 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1642 368 254 76 8 chr6 138544525 138544644 -10972393 - Charlie1b DNA MER1_type 0 523 397 5 1642 22 35 0 0 chr6 138544834 138544863 -10972174 + AT_rich Low_complexity Low_complexity 1 29 0 5 1642 488 316 17 6 chr6 138544904 138545079 -10971958 - Charlie1b DNA MER1_type -282 241 65 5 1642 300 53 0 0 chr6 138545144 138545182 -10971855 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1642 304 251 76 119 chr6 138545189 138545374 -10971663 - HAL1 LINE L1 -1556 951 775 5 1642 269 352 44 35 chr6 138545494 138545721 -10971316 - MER20B DNA MER1_type -97 686 458 5 1642 588 152 0 0 chr6 138546273 138546405 -10970632 + CT-rich Low_complexity Low_complexity 1 132 0 6 1642 351 0 0 0 chr6 138546407 138546446 -10970591 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1642 359 330 0 0 chr6 138547881 138547975 -10969062 - RSINE1 SINE B4 -65 100 7 6 1642 32 43 0 0 chr6 138548327 138548373 -10968664 + AT_rich Low_complexity Low_complexity 1 46 0 6 1642 433 299 118 44 chr6 138549571 138549774 -10967263 + ORR1D2 LTR MaLR 153 370 0 6 1642 1109 283 27 109 chr6 138549808 138550220 -10966817 - MTEa LTR MaLR -1 378 1 6 1642 25 51 0 0 chr6 138550895 138550934 -10966103 + AT_rich Low_complexity Low_complexity 1 39 0 6 1642 4719 154 35 0 chr6 138551215 138552141 -10964896 + L1_Mur2 LINE L1 4340 5297 -580 6 1642 237 65 0 0 chr6 138552271 138552302 -10964735 + (CAGT)n Simple_repeat Simple_repeat 2 32 0 6 1642 296 302 41 12 chr6 138552467 138552638 -10964399 + L1M4c LINE L1 1608 1783 -4601 6 1642 398 318 77 10 chr6 138552951 138553145 -10963892 + L1M4c LINE L1 2209 2415 -3969 6 1642 1221 53 6 0 chr6 138553148 138553318 -10963719 + L1Md_F2 LINE L1 6411 6581 -1 7 1642 358 226 15 45 chr6 138553458 138553592 -10963445 + Lx9 LINE L1 7504 7633 -11 7 1642 229 340 90 42 chr6 138553647 138553813 -10963224 + L1M4c LINE L1 5047 5220 -1159 6 1642 359 270 80 33 chr6 138554064 138554394 -10962643 + L1M4c LINE L1 5498 5821 -727 6 1642 217 146 20 40 chr6 138554756 138554806 -10962231 + A-rich Low_complexity Low_complexity 2 50 0 7 1642 3247 116 179 14 chr6 138556802 138557434 -10959603 - RMER17A LTR ERVK -15 736 1 7 1642 426 127 0 0 chr6 138557434 138557505 -10959532 + (A)n Simple_repeat Simple_repeat 1 71 0 7 1642 249 274 26 169 chr6 138558124 138558313 -10958724 + RSINE1 SINE B4 2 163 -2 7 1642 207 0 0 0 chr6 138560009 138560032 -10957005 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1642 264 352 17 69 chr6 138560121 138560237 -10956800 + B1F SINE Alu 1 110 -39 7 1642 789 210 6 0 chr6 138561481 138561638 -10955399 - URR1B DNA MER1_type 0 225 68 7 1642 423 0 0 0 chr6 138561751 138561798 -10955239 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1642 2864 50 24 8 chr6 138562582 138562963 -10954074 + MTA_Mm LTR MaLR 2 388 -8 8 1642 23 0 0 0 chr6 138563698 138563721 -10953316 + AT_rich Low_complexity Low_complexity 1 23 0 8 1642 351 0 0 0 chr6 138564481 138564520 -10952517 + (TATG)n Simple_repeat Simple_repeat 3 41 0 8 1642 499 402 36 14 chr6 138565632 138565912 -10951125 + MER77 LTR ERVL 319 604 -3 8 1642 180 0 0 0 chr6 138566666 138566686 -10950351 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1642 295 338 0 0 chr6 138567048 138567128 -10949909 - L2a LINE L2 -348 3078 2999 8 1642 270 0 0 0 chr6 138568609 138568639 -10948398 + (TA)n Simple_repeat Simple_repeat 1 30 0 8 1642 574 274 167 0 chr6 138568973 138569247 -10947790 - MTEb LTR MaLR -27 352 9 8 1642 1173 325 38 50 chr6 138569260 138569736 -10947301 + MLT2B1 LTR ERVL 51 520 0 8 1642 406 222 185 0 chr6 138570090 138570198 -10946839 + RSINE1 SINE B4 3 130 -35 8 1642 446 237 35 0 chr6 138570198 138570371 -10946666 + (TATG)n Simple_repeat Simple_repeat 1 179 0 9 1642 217 316 13 13 chr6 138570526 138570603 -10946434 + ID4_ SINE ID 3 79 -4 9 1642 752 265 56 79 chr6 138571532 138571770 -10945267 - Lx6 LINE L1 -23 7437 7187 9 1642 7330 113 41 28 chr6 138571770 138572964 -10944073 + Lx3A LINE L1 5761 6970 -11 9 1642 441 0 0 0 chr6 138572964 138573013 -10944024 + (CATA)n Simple_repeat Simple_repeat 2 50 0 9 1642 752 265 56 79 chr6 138573013 138573129 -10943908 - Lx6 LINE L1 -274 7186 7091 9 1642 270 0 0 0 chr6 138573309 138573339 -10943698 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1642 959 284 192 7 chr6 138573339 138573751 -10943286 - Lx6 LINE L1 -344 7116 6629 9 1642 2082 178 7 19 chr6 138573788 138574200 -10942837 + MTB_Mm LTR MaLR 1 407 0 9 1642 417 110 0 0 chr6 138574207 138574280 -10942757 + (TC)n Simple_repeat Simple_repeat 2 74 0 9 1642 340 340 138 44 chr6 138574347 138574507 -10942530 - B3A SINE B2 -16 182 8 9 1642 947 90 90 0 chr6 138575027 138575161 -10941876 + B1_Mm SINE Alu 2 147 0 9 1642 314 98 0 19 chr6 138575208 138575260 -10941777 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 1 1642 242 301 0 0 chr6 138575337 138575455 -10941582 + (TA)n Simple_repeat Simple_repeat 1 118 0 1 1642 180 0 0 0 chr6 138575605 138575625 -10941412 + (CAAAC)n Simple_repeat Simple_repeat 1 20 0 1 1642 28 29 0 0 chr6 138576150 138576185 -10940852 + AT_rich Low_complexity Low_complexity 1 35 0 1 1642 845 212 14 81 chr6 138576547 138576757 -10940280 + B3A SINE B2 1 196 -2 1 1642 4194 166 9 17 chr6 138576783 138577537 -10939500 + RMER6A LTR ERVK 1 748 -8 1 1642 421 270 187 14 chr6 138578094 138578233 -10938804 + B3 SINE B2 2 164 -52 1 1642 453 76 0 0 chr6 138578233 138578299 -10938738 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1642 3727 193 69 73 chr6 138578323 138579222 -10937815 + RMER19B LTR ERVK 5 899 -3 1 1642 1801 182 53 8 chr6 138579392 138579753 -10937284 + ORR1C1 LTR MaLR 2 378 0 1 1642 233 366 0 0 chr6 138580275 138580368 -10936669 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1642 288 218 38 13 chr6 138580436 138580515 -10936522 + (CCCTAA)n Simple_repeat Simple_repeat 5 85 0 1 1642 470 349 36 12 chr6 138580515 138580683 -10936354 - B4A SINE B4 -107 185 14 1 1642 423 0 0 0 chr6 138580719 138580766 -10936271 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1642 750 278 86 12 chr6 138580766 138581010 -10936027 - B4A SINE B4 -26 266 5 1 1642 443 307 29 22 chr6 138581216 138581489 -10935548 + L1M5 LINE L1 3392 3666 -2480 1 1642 1206 130 101 0 chr6 138582373 138582580 -10934457 + RMER6C LTR ERVK 1 228 -492 1 1642 248 148 0 16 chr6 138582614 138582676 -10934361 + (CAGTT)n Simple_repeat Simple_repeat 2 62 0 1 1642 1023 225 175 65 chr6 138582722 138583063 -10933974 - RLTR11A2 LTR ERVK -131 396 1 1 1642 1604 158 10 10 chr6 138583064 138583352 -10933685 + RMER6C LTR ERVK 403 690 0 1 1642 419 52 17 0 chr6 138583433 138583491 -10933546 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1642 707 222 7 22 chr6 138585121 138585259 -10931778 + B1_Mur3 SINE Alu 12 147 -2 1 1642 207 0 0 0 chr6 138585292 138585315 -10931722 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1 1642 180 0 0 0 chr6 138585337 138585357 -10931680 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1642 1114 34 7 14 chr6 138585725 138585873 -10931164 + (TCTA)n Simple_repeat Simple_repeat 2 148 0 1 1642 347 338 36 70 chr6 138586231 138586466 -10930571 + MTEa LTR MaLR 2 216 -163 1 1642 213 94 0 0 chr6 138586466 138586498 -10930539 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1642 243 279 70 47 chr6 138586518 138586646 -10930391 + MTEa LTR MaLR 238 368 -11 1 1642 3041 110 84 8 chr6 138586895 138587373 -10929664 - Lx2 LINE L1 -3 6994 6481 1 1642 203 229 29 103 chr6 138587831 138587899 -10929138 - L2c LINE L2 -38 3349 3287 1 1642 447 19 0 0 chr6 138589119 138589171 -10927866 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1642 1985 133 22 10 chr6 138589763 138590074 -10926963 + ORR1A2 LTR MaLR 5 319 -8 1 1642 8962 142 153 15 chr6 138590078 138590315 -10926722 + ORR1A2-int LTR MaLR 1 235 -1728 1 1642 183 42 0 0 chr6 138590315 138590339 -10926698 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 1642 8962 142 153 15 chr6 138590339 138590471 -10926566 + ORR1A2-int LTR MaLR 236 346 -1617 1 1642 180 0 0 0 chr6 138590471 138590491 -10926546 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1642 8962 142 153 15 chr6 138590491 138590568 -10926469 + ORR1A2-int LTR MaLR 347 429 -1534 1 1642 486 0 0 0 chr6 138590568 138590622 -10926415 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1642 8962 142 153 15 chr6 138590622 138591898 -10925139 + ORR1A2-int LTR MaLR 430 1961 -2 1 1642 1930 148 6 30 chr6 138591898 138592233 -10924804 + ORR1A2 LTR MaLR 1 327 0 1 1642 571 238 9 0 chr6 138592401 138592502 -10924535 + B1F SINE Alu 12 113 -36 1 1642 2322 130 78 69 chr6 138592502 138592949 -10924088 + RLTR11B LTR ERVK 1 451 -2 1 1642 183 129 0 0 chr6 138592986 138593017 -10924020 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1642 369 280 50 72 chr6 138593857 138593982 -10923055 + PB1 SINE Alu 9 127 0 1 1642 867 244 43 0 chr6 138594058 138594267 -10922770 - URR1A DNA MER1_type -4 222 5 1 1642 258 56 0 0 chr6 138594544 138594580 -10922457 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1642 9448 23 0 0 chr6 138595809 138597634 -10919403 - L1Md_T LINE L1 0 6582 4758 1 1642 237 98 0 0 chr6 138597766 138597807 -10919230 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1642 24 77 0 0 chr6 138597988 138598040 -10918997 + AT_rich Low_complexity Low_complexity 1 52 0 1 1642 11722 172 42 47 chr6 138598682 138601735 -10915302 + Lx5 LINE L1 917 3999 -1878 1 1642 3091 186 38 6 chr6 138601719 138602669 -10914368 + Lx5 LINE L1 5139 6134 -916 1 1642 4230 201 50 13 chr6 138602669 138603660 -10913377 + Lx5 LINE L1 6023 7050 0 1 1642 246 105 0 0 chr6 138604182 138604220 -10912817 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1642 380 287 8 54 chr6 138604601 138604730 -10912307 + MER63B DNA AcHobo 313 435 -1 1 1642 291 218 301 0 chr6 138605465 138605598 -10911439 - Tigger7 DNA MER2_type -60 2431 2259 1 1642 494 242 38 0 chr6 138607003 138607135 -10909902 - B1F1 SINE Alu -12 137 1 1 1642 441 276 26 0 chr6 138607144 138607260 -10909777 - Tigger7 DNA MER2_type -240 2251 2133 1 1642 492 360 32 74 chr6 138607259 138607544 -10909493 - Tigger7 DNA MER2_type -2186 305 33 1 1642 2200 64 0 3 chr6 138607594 138607880 -10909157 - L1_Mm LINE L1 -263 5620 5335 1 1642 2524 30 0 10 chr6 138607880 138608184 -10908853 + L1Md_F2 LINE L1 6267 6567 -15 1 1642 486 0 0 0 chr6 138608274 138608328 -10908709 + (TTA)n Simple_repeat Simple_repeat 2 55 0 1 1642 397 147 0 0 chr6 138608333 138608401 -10908636 - Lx3B LINE L1 -3 6970 6903 1 1642 456 238 193 0 chr6 138608443 138608624 -10908413 - B3 SINE B2 0 216 1 1 1642 358 344 120 28 chr6 138608692 138609051 -10907986 + MER97c DNA MER1_type? 299 690 -400 1 1642 24 0 0 0 chr6 138609349 138609373 -10907664 + AT_rich Low_complexity Low_complexity 1 24 0 1 1642 230 295 122 83 chr6 138609831 138610012 -10907025 - LTR50 LTR ERVL -479 316 129 1 1642 317 258 121 79 chr6 138610148 138610388 -10906649 - L1ME2 LINE L1 -1 6161 5912 1 1642 316 307 0 0 chr6 138610627 138610704 -10906333 + ID_B1 SINE B4 81 153 -71 1 1642 292 316 158 0 chr6 138610637 138610732 -10906305 + PB1D10 SINE Alu 6 115 -2 1 1642 579 29 0 0 chr6 138611875 138611944 -10905093 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1642 390 203 16 8 chr6 138612245 138612347 -10904690 + CT-rich Low_complexity Low_complexity 28 130 0 1 1642 1001 118 11 11 chr6 138612347 138612527 -10904510 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1642 390 203 16 8 chr6 138612527 138612553 -10904484 + polypyrimidine Low_complexity Low_complexity 1 27 0 1 1642 385 284 21 0 chr6 138612555 138612650 -10904387 - B1_Mur1 SINE Alu 0 149 53 1 1642 345 295 0 0 chr6 138612758 138612838 -10904199 + ID_B1 SINE B4 81 156 -68 1 1642 864 269 96 3 chr6 138613012 138613303 -10903734 - Lx6 LINE L1 -1 7459 7142 1 1642 2141 217 54 45 chr6 138613394 138613930 -10903107 + RLTR20A LTR ERVK 1 541 0 1 1642 1026 258 17 24 chr6 138614014 138614304 -10902733 + Lx2B LINE L1 6709 6996 -4 1 1642 2186 194 170 33 chr6 138615142 138615478 -10901559 + RMER6C LTR ERVK 1 387 -303 1 1642 207 0 0 0 chr6 138615478 138615501 -10901536 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1642 562 37 12 12 chr6 138615501 138615582 -10901455 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 1642 2186 194 170 33 chr6 138615582 138615851 -10901186 + RMER6C LTR ERVK 388 689 -1 1 1642 198 0 0 0 chr6 138616254 138616276 -10900761 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 1642 510 295 69 51 chr6 138617163 138617338 -10899699 + B4 SINE B4 1 178 -114 1 1642 361 316 43 65 chr6 138617340 138617526 -10899511 + RMER12 LTR ERVK 1141 1322 0 1 1642 487 278 124 0 chr6 138617717 138617871 -10899166 - B3 SINE B2 -3 195 21 1 1642 1383 248 46 6 chr6 138617914 138618243 -10898794 + ORR1D1 LTR MaLR 1 342 -32 1 1642 271 0 51 0 chr6 138618419 138618458 -10898579 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1642 765 279 273 22 chr6 138618603 138618673 -10898364 + RMER15 LTR ERVL 61 134 -441 1 1642 2083 191 5 18 chr6 138618673 138619072 -10897965 - ORR1B1 LTR MaLR 0 394 1 1 1642 765 279 273 22 chr6 138619072 138619411 -10897626 + RMER15 LTR ERVL 135 572 -3 1 1642 477 0 0 0 chr6 138621888 138621941 -10895096 + (TAA)n Simple_repeat Simple_repeat 2 54 0 1 1642 558 0 0 0 chr6 138621941 138622003 -10895034 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 1 1642 270 0 0 0 chr6 138622409 138622439 -10894598 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1642 291 28 0 0 chr6 138622780 138622816 -10894221 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1642 231 88 0 0 chr6 138623753 138623787 -10893250 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1642 270 81 0 0 chr6 138623787 138623824 -10893213 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1642 26 0 0 0 chr6 138624942 138624968 -10892069 + AT_rich Low_complexity Low_complexity 1 26 0 1 1642 226 333 22 54 chr6 138625511 138625603 -10891434 - B3 SINE B2 -6 210 122 1 1642 437 333 23 0 chr6 138625566 138625695 -10891342 - B4A SINE B4 -4 288 157 1 1642 216 86 0 0 chr6 138626149 138626184 -10890853 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1642 224 369 47 28 chr6 138626356 138626462 -10890575 + PB1D7 SINE Alu 1 108 -12 1 1642 428 345 66 13 chr6 138626494 138626642 -10890395 - L1M4 LINE L1 -990 5156 4996 1 1642 235 0 57 0 chr6 138626642 138626677 -10890360 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1642 428 345 66 13 chr6 138626677 138626845 -10890192 - L1M4 LINE L1 -1151 4995 4824 1 1642 204 122 0 0 chr6 138626999 138627040 -10889997 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1642 804 241 43 38 chr6 138627042 138627253 -10889784 + ORR1D1 LTR MaLR 163 374 0 1 1642 38 39 0 0 chr6 138627621 138627673 -10889364 + AT_rich Low_complexity Low_complexity 1 52 0 1 1642 251 289 24 24 chr6 138627914 138627999 -10889038 - MER58A DNA MER1_type -107 117 33 1 1642 193 189 36 54 chr6 138628316 138628372 -10888665 - MIRc SINE MIR -59 209 155 1 1642 556 309 14 14 chr6 138628754 138628895 -10888142 - ID_B1 SINE B4 0 224 84 1 1642 26 50 0 0 chr6 138629037 138629077 -10887960 + AT_rich Low_complexity Low_complexity 1 40 0 1 1642 384 317 126 42 chr6 138629467 138629823 -10887214 + Lx9 LINE L1 7065 7450 -194 1 1642 340 297 96 30 chr6 138630093 138630291 -10886746 + B3 SINE B2 5 215 -1 2 1642 420 71 0 0 chr6 138631428 138631484 -10885553 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 2 1642 956 272 54 3 chr6 138631486 138631781 -10885256 - Lx2B LINE L1 -6 6994 6685 2 1642 941 286 70 35 chr6 138631783 138632272 -10884765 - Lx8 LINE L1 0 7473 6968 2 1642 26 30 0 0 chr6 138632410 138632443 -10884594 + AT_rich Low_complexity Low_complexity 1 33 0 2 1642 252 195 11 54 chr6 138632460 138632552 -10884485 + A-rich Low_complexity Low_complexity 3 90 0 2 1642 3034 93 23 37 chr6 138633901 138634383 -10882654 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1642 4512 75 1 42 chr6 138634384 138635066 -10881971 + IAPEz-int LTR ERVK 9 662 -5819 2 1642 2122 65 0 0 chr6 138635066 138635344 -10881693 + IAPEz-int LTR ERVK 1359 1636 -4845 2 1642 5758 44 5 12 chr6 138635343 138636094 -10880943 + IAPEz-int LTR ERVK 5736 6481 0 2 1642 2558 101 110 21 chr6 138636094 138636530 -10880507 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1642 466 53 26 26 chr6 138636530 138636608 -10880429 + (TCTCTG)n Simple_repeat Simple_repeat 3 80 0 2 1642 495 48 0 0 chr6 138637266 138637328 -10879709 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1642 266 284 8 51 chr6 138637335 138637442 -10879595 + PB1D10 SINE Alu 23 120 0 2 1642 273 29 0 0 chr6 138637955 138637989 -10879048 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2 1642 242 329 0 12 chr6 138638269 138638355 -10878682 + GA-rich Low_complexity Low_complexity 3 87 0 2 1642 243 61 0 0 chr6 138640450 138640483 -10876554 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1642 324 188 0 0 chr6 138640616 138640680 -10876357 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1642 275 341 101 24 chr6 138640833 138641001 -10876036 - MER2 DNA MER2_type -164 181 1 2 1642 636 14 0 0 chr6 138641071 138641144 -10875893 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1642 417 123 0 0 chr6 138641518 138641583 -10875454 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1642 228 130 0 0 chr6 138642560 138642606 -10874431 + (A)n Simple_repeat Simple_repeat 1 46 0 2 1642 553 135 9 18 chr6 138643662 138643775 -10873262 + GA-rich Low_complexity Low_complexity 2 113 0 2 1642 37912 27 1 6 chr6 138643950 138650135 -10866902 - L1Md_T LINE L1 -1 6581 449 2 1642 344 340 90 0 chr6 138650404 138650548 -10866489 + HAL1-3A_ME LINE L1 2284 2440 -418 2 1642 251 169 0 48 chr6 138650552 138650614 -10866423 + G-rich Low_complexity Low_complexity 3 61 0 2 1642 211 382 0 0 chr6 138650633 138650688 -10866349 + PB1 SINE Alu 11 65 -62 2 1642 251 207 0 35 chr6 138650869 138650954 -10866083 + GA-rich Low_complexity Low_complexity 4 85 0 2 1642 684 118 24 0 chr6 138651589 138651716 -10865321 + (TCTCCC)n Simple_repeat Simple_repeat 2 131 0 2 1642 1222 88 22 0 chr6 138651716 138651897 -10865140 - Lx LINE L1 -561 6093 5909 2 1642 1008 125 0 13 chr6 138651897 138652051 -10864986 + B2_Mm2 SINE B2 2 153 -42 2 1642 27 49 0 0 chr6 138652640 138652681 -10864356 + AT_rich Low_complexity Low_complexity 1 41 0 2 1642 702 304 33 26 chr6 138652766 138653039 -10863998 - B4A SINE B4 -13 279 5 2 1642 1111 169 0 5 chr6 138653077 138653285 -10863752 - Lx LINE L1 -4 6650 6444 2 1642 304 298 24 16 chr6 138653525 138653651 -10863386 + RMER12 LTR ERVK 729 855 -467 2 1642 24 0 0 0 chr6 138653929 138653953 -10863084 + AT_rich Low_complexity Low_complexity 1 24 0 2 1642 255 179 0 0 chr6 138654258 138654325 -10862712 + T-rich Low_complexity Low_complexity 1 67 0 2 1642 567 297 45 0 chr6 138654588 138654743 -10862294 - RSINE1 SINE B4 -2 163 2 2 1642 22 0 0 0 chr6 138655328 138655350 -10861687 + AT_rich Low_complexity Low_complexity 1 22 0 2 1642 273 29 0 0 chr6 138656595 138656629 -10860408 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1642 360 64 0 0 chr6 138656846 138656893 -10860144 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1642 31 0 0 0 chr6 138657251 138657282 -10859755 + AT_rich Low_complexity Low_complexity 1 31 0 2 1642 29 0 0 0 chr6 138658033 138658062 -10858975 + AT_rich Low_complexity Low_complexity 1 29 0 2 1642 198 0 0 0 chr6 138658571 138658593 -10858444 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1642 1561 146 56 30 chr6 138660030 138660334 -10856703 - Lx4B LINE L1 -4 7054 6743 2 1642 201 227 22 22 chr6 138660430 138660520 -10856517 + CT-rich Low_complexity Low_complexity 3 92 0 2 1642 289 339 44 9 chr6 138660555 138660668 -10856369 - PB1D10 SINE Alu 0 117 1 2 1642 181 356 51 17 chr6 138661214 138661331 -10855706 - MIR SINE MIR -109 153 33 2 1642 621 86 0 0 chr6 138661363 138661456 -10855581 + (TC)n Simple_repeat Simple_repeat 2 94 0 2 1642 222 159 27 27 chr6 138661494 138661604 -10855433 + (TA)n Simple_repeat Simple_repeat 2 111 0 2 1642 927 249 10 0 chr6 138661617 138661826 -10855211 - B3 SINE B2 -5 211 1 2 1642 213 176 111 56 chr6 138662008 138662062 -10854975 + L2c LINE L2 3291 3347 -40 2 1642 192 97 0 0 chr6 138662976 138663007 -10854030 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1642 345 300 116 67 chr6 138663534 138663759 -10853278 + B4A SINE B4 46 281 -11 2 1642 672 13 0 0 chr6 138663778 138663855 -10853182 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 1642 414 0 0 0 chr6 138663856 138663902 -10853135 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1642 1179 47 0 34 chr6 138664417 138664683 -10852354 + (TG)n Simple_repeat Simple_repeat 1 256 0 2 1642 624 294 21 57 chr6 138664687 138665009 -10852028 + RLTR12B LTR ERVK 19 324 -244 2 1642 595 293 73 44 chr6 138665034 138665309 -10851728 + RLTR12B LTR ERVK 242 524 -4 2 1642 294 29 0 0 chr6 138665316 138665351 -10851686 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 2 1642 256 329 69 24 chr6 138665971 138666217 -10850820 + L1MC1 LINE L1 5889 6145 -188 2 1642 418 304 32 14 chr6 138666514 138666668 -10850369 + MLT1A1 LTR MaLR 204 406 -2 2 1642 473 369 38 48 chr6 138666866 138667159 -10849878 + B4A SINE B4 3 292 0 2 1642 354 45 0 0 chr6 138667165 138667209 -10849828 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1642 477 248 69 50 chr6 138668039 138668197 -10848840 + B3 SINE B2 10 176 -22 2 1642 513 0 0 0 chr6 138668440 138668497 -10848540 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1642 249 33 0 0 chr6 138668497 138668526 -10848511 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1642 294 162 43 103 chr6 138668526 138668643 -10848394 + Lx9 LINE L1 7535 7644 0 2 1642 339 268 49 13 chr6 138668928 138669036 -10848001 + B1_Mur1 SINE Alu 2 141 -8 2 1642 682 319 93 26 chr6 138669173 138669443 -10847594 + B4 SINE B4 3 290 -2 2 1642 308 24 24 0 chr6 138669449 138669490 -10847547 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1642 772 282 5 0 chr6 138669951 138670157 -10846880 - B3 SINE B2 -8 208 2 2 1642 469 308 7 36 chr6 138670278 138670416 -10846621 - B3A SINE B2 -64 134 1 2 1642 289 75 38 0 chr6 138671535 138671588 -10845449 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1642 186 43 0 0 chr6 138671594 138671617 -10845420 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 1642 1221 103 27 0 chr6 138671617 138671802 -10845235 - BGLII_Mus LTR ERVK -232 190 1 2 1642 6045 179 26 18 chr6 138671803 138673440 -10843597 + Lx5 LINE L1 4635 6295 -755 2 205 233 339 133 126 chr6 138674037 138674331 -10842706 + ORR1E LTR MaLR 53 348 -11 2 1643 254 211 62 21 chr6 138674418 138674515 -10842522 + L1M5 LINE L1 3798 3898 -2248 2 1643 2818 91 25 15 chr6 138676432 138676835 -10840202 - MTB_Mm LTR MaLR 0 407 1 2 1643 3028 85 2 0 chr6 138677028 138677427 -10839610 - MTB LTR MaLR 0 400 1 2 1643 482 268 76 6 chr6 138677826 138677984 -10839053 + MER68-int LTR ERVL 2752 2920 -70 2 1643 514 344 77 96 chr6 138678109 138678578 -10838459 + LTR40a LTR ERVL 8 467 -52 2 1643 225 286 20 39 chr6 138678742 138678844 -10838193 - L1M4 LINE L1 -2098 4048 3949 2 1643 213 119 0 0 chr6 138678844 138678886 -10838151 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1643 265 269 144 25 chr6 138679060 138679178 -10837859 - L1M3e LINE L1 -4329 2778 2647 2 1643 239 284 75 18 chr6 138679496 138679698 -10837339 - L1M3e LINE L1 -4640 2397 2159 2 1643 272 273 430 95 chr6 138679780 138679936 -10837101 - ID_B1 SINE B4 -9 215 8 2 1643 992 261 74 42 chr6 138680012 138680073 -10836964 - MTE2a LTR MaLR 0 379 322 2 1643 2417 170 79 161 chr6 138680073 138680824 -10836213 + RMER6C LTR ERVK 2 690 0 2 1643 992 262 70 52 chr6 138680824 138681149 -10835888 - MTE2a LTR MaLR -58 321 3 2 1643 397 240 225 17 chr6 138681150 138681328 -10835709 - L1M3e LINE L1 -4963 2067 1853 2 1643 349 233 216 8 chr6 138681516 138681650 -10835387 - L1M3e LINE L1 -6670 360 199 2 1643 551 286 8 0 chr6 138681913 138682039 -10834998 - Lx5 LINE L1 -160 6890 6764 2 1643 370 333 40 64 chr6 138682075 138682325 -10834712 - L1M3e LINE L1 -5827 1281 1038 2 1643 1949 192 22 25 chr6 138682368 138682773 -10834264 - RLTR33 LTR ERVK -2 676 273 2 1643 283 304 50 42 chr6 138682695 138682815 -10834222 + MLT2D LTR ERVL 165 285 -129 2 1643 680 316 23 14 chr6 138683092 138683310 -10833727 - Lx6 LINE L1 -195 7265 7046 2 1643 22 35 0 0 chr6 138683508 138683537 -10833500 + AT_rich Low_complexity Low_complexity 1 29 0 2 1643 262 0 26 26 chr6 138685773 138685812 -10831225 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1643 268 323 39 8 chr6 138686170 138686298 -10830739 - B3 SINE B2 -5 211 80 2 1643 408 187 12 55 chr6 138686493 138686657 -10830380 + (CAAA)n Simple_repeat Simple_repeat 2 158 0 2 1643 297 0 0 0 chr6 138686657 138686690 -10830347 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1643 482 299 31 8 chr6 138686693 138686821 -10830216 + ID_B1 SINE B4 84 214 -10 2 1643 240 273 93 47 chr6 138686715 138686865 -10830172 - YREP_Mm Unknown Unknown -1520 292 136 2 1643 1092 82 0 0 chr6 138688438 138688585 -10828452 + B1_Mus1 SINE Alu 1 147 -1 2 1643 534 16 0 0 chr6 138688586 138688649 -10828388 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1643 245 368 48 0 chr6 138688821 138688946 -10828091 + MER63D DNA AcHobo 15 145 -916 2 1643 1018 81 7 0 chr6 138688961 138689097 -10827940 + B1_Mus1 SINE Alu 4 140 -8 3 1643 2001 80 0 0 chr6 138689347 138689649 -10827388 - L1_Mus1 LINE L1 0 6567 6304 3 1643 787 190 143 5 chr6 138689780 138689976 -10827061 - URR1A DNA MER1_type -1 225 3 3 1643 37907 47 0 3 chr6 138690001 138696634 -10820403 - L1Md_T LINE L1 -2 6583 1 3 1643 241 325 92 29 chr6 138696709 138696915 -10820122 + MER63D DNA AcHobo 749 965 -96 2 1643 816 187 40 56 chr6 138697694 138697892 -10819145 + B2_Mm2 SINE B2 1 195 0 3 1643 397 318 88 21 chr6 138698672 138698865 -10818172 + MER58A DNA MER1_type 2 207 -17 3 1643 256 233 52 112 chr6 138699520 138699636 -10817401 - B3A SINE B2 -89 109 1 3 1643 252 0 0 0 chr6 138700006 138700034 -10817003 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1643 285 162 0 0 chr6 138700034 138700102 -10816935 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1643 338 119 0 4 chr6 138700168 138700229 -10816808 + L1_Mur2 LINE L1 4670 4729 -1151 3 1643 369 0 0 0 chr6 138700229 138700270 -10816767 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 1643 6881 91 24 5 chr6 138700276 138701934 -10815103 + L1_Mus2 LINE L1 4884 6563 -3 3 1643 189 350 143 0 chr6 138702252 138702392 -10814645 + MIR3 SINE MIR 28 187 -21 3 1643 382 147 13 0 chr6 138702695 138702770 -10814267 - Lx4A LINE L1 -1 7057 6982 3 1643 252 0 0 0 chr6 138704218 138704246 -10812791 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1643 1219 39 7 0 chr6 138704624 138704777 -10812260 - L1_Mm LINE L1 -4017 1866 1713 3 1643 566 78 0 47 chr6 138704777 138704884 -10812153 + L1Md_F2 LINE L1 6481 6582 0 3 1643 267 104 0 0 chr6 138704965 138705013 -10812024 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1643 2025 263 69 18 chr6 138705170 138705840 -10811197 + Lx9 LINE L1 6938 7641 -3 3 1643 220 326 105 8 chr6 138705867 138706000 -10811037 + MIRb SINE MIR 58 203 -65 3 1643 180 0 0 0 chr6 138706100 138706120 -10810917 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1643 315 0 0 0 chr6 138706992 138707027 -10810010 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 1643 216 0 0 0 chr6 138707027 138707050 -10809987 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1643 1951 235 24 5 chr6 138707698 138708109 -10808928 - MTD LTR MaLR 0 419 1 3 1643 862 129 0 0 chr6 138708182 138708306 -10808731 - B2_Mm2 SINE B2 -69 126 3 3 1643 27 96 0 0 chr6 138708435 138708518 -10808519 + AT_rich Low_complexity Low_complexity 1 83 0 3 1643 31 44 0 0 chr6 138708550 138708595 -10808442 + AT_rich Low_complexity Low_complexity 1 45 0 3 1643 22 35 0 0 chr6 138708819 138708848 -10808189 + AT_rich Low_complexity Low_complexity 1 29 0 3 1643 2110 113 24 45 chr6 138708876 138709210 -10807827 - ORR1A2 LTR MaLR 0 327 1 3 1643 241 234 24 83 chr6 138709248 138709332 -10807705 + Lx8 LINE L1 7019 7097 -376 3 1643 479 370 78 42 chr6 138709942 138710326 -10806711 - LTR40a LTR ERVL -38 481 84 3 1643 186 133 0 0 chr6 138711352 138711382 -10805655 + (TATG)n Simple_repeat Simple_repeat 3 32 0 3 1643 942 162 0 0 chr6 138711390 138711569 -10805468 + (TA)n Simple_repeat Simple_repeat 2 180 0 3 1643 297 0 0 0 chr6 138711575 138711608 -10805429 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1643 565 320 30 0 chr6 138711735 138711938 -10805099 - ID_B1 SINE B4 -15 209 1 3 1643 22 35 0 0 chr6 138711995 138712024 -10805013 + AT_rich Low_complexity Low_complexity 1 29 0 3 1643 22 0 0 0 chr6 138712402 138712424 -10804613 + AT_rich Low_complexity Low_complexity 1 22 0 3 1643 294 269 82 130 chr6 138712479 138712663 -10804374 + B2_Mm2 SINE B2 1 175 -20 3 1643 428 282 178 20 chr6 138712674 138712826 -10804211 + B3A SINE B2 1 176 -22 3 1643 267 347 16 0 chr6 138713347 138713444 -10803593 - B1F2 SINE Alu -49 100 1 3 1643 262 333 14 14 chr6 138713534 138713604 -10803433 + ID4_ SINE ID 8 77 -6 3 1643 235 343 0 28 chr6 138713641 138713713 -10803324 - MIRb SINE MIR -36 232 163 3 1643 306 0 0 0 chr6 138714031 138714065 -10802972 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1643 539 196 9 0 chr6 138714321 138714428 -10802609 + B3A SINE B2 3 110 -88 3 1643 333 0 0 0 chr6 138714428 138714465 -10802572 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1643 259 244 217 0 chr6 138714492 138714607 -10802430 - Lx6 LINE L1 -34 7426 7287 3 1643 29 28 0 0 chr6 138714767 138714803 -10802234 + AT_rich Low_complexity Low_complexity 1 36 0 3 1643 328 88 29 29 chr6 138715491 138715561 -10801476 + (CATA)n Simple_repeat Simple_repeat 2 71 0 3 1643 224 188 31 0 chr6 138715580 138715644 -10801393 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1643 2994 202 15 28 chr6 138715675 138715837 -10801200 - RMER1A Other Other -5 1025 859 3 1643 2456 58 0 0 chr6 138715837 138716171 -10800866 + L1Md_F2 LINE L1 6258 6582 0 3 1643 2994 202 15 28 chr6 138716171 138716613 -10800424 - RMER1A Other Other -172 858 429 3 1643 402 21 0 0 chr6 138716620 138716667 -10800370 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1643 1225 108 17 0 chr6 138717119 138717295 -10799742 - B2_Mm2 SINE B2 -14 181 3 3 1643 445 311 88 98 chr6 138717592 138717898 -10799139 + ORR1E LTR MaLR 55 357 -2 3 1643 367 340 98 55 chr6 138718309 138718657 -10798380 - MLT1J1 LTR MaLR -1 443 81 3 1643 381 198 0 0 chr6 138719594 138719675 -10797362 + CT-rich Low_complexity Low_complexity 4 84 0 3 1643 1165 258 61 26 chr6 138720542 138720888 -10796149 - ORR1D2 LTR MaLR -12 358 1 3 1643 347 277 34 129 chr6 138720888 138721066 -10795971 - ORR1D2-int LTR MaLR 0 1370 1210 3 1643 644 282 11 23 chr6 138721322 138721496 -10795541 - B3A SINE B2 -22 176 5 3 1643 207 194 0 0 chr6 138722121 138722157 -10794880 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 3 1643 324 0 0 0 chr6 138722603 138722639 -10794398 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1643 673 345 39 19 chr6 138723268 138723578 -10793459 - MLT1A0 LTR MaLR -12 353 38 3 1643 328 308 0 17 chr6 138723814 138723933 -10793104 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 3 1643 225 233 0 0 chr6 138724137 138724180 -10792857 + CT-rich Low_complexity Low_complexity 3 45 0 3 1643 373 298 108 36 chr6 138724183 138724350 -10792687 - HAL1-3A_ME LINE L1 -420 2438 2260 3 1643 21 36 0 0 chr6 138725015 138725043 -10791994 + AT_rich Low_complexity Low_complexity 1 28 0 3 1643 495 0 0 0 chr6 138725504 138725559 -10791478 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1643 222 37 0 0 chr6 138725858 138725885 -10791152 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1643 21 57 0 0 chr6 138726272 138726307 -10790730 + AT_rich Low_complexity Low_complexity 1 35 0 3 1643 440 258 11 0 chr6 138726579 138726672 -10790365 - B3 SINE B2 -48 168 75 3 1643 7399 82 4 0 chr6 138726672 138727745 -10789292 + L1_Mus2 LINE L1 5489 6565 -1 3 1643 513 0 0 0 chr6 138727756 138727813 -10789224 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 1643 370 212 12 12 chr6 138727814 138727895 -10789142 - B3 SINE B2 -135 81 1 3 1643 733 239 40 58 chr6 138728741 138729069 -10787968 + RLTR15 LTR ERVK 1 322 -37 3 1643 422 259 84 134 chr6 138729117 138729438 -10787599 - MTEa LTR MaLR -74 305 1 3 1643 28 29 0 0 chr6 138729731 138729766 -10787271 + AT_rich Low_complexity Low_complexity 1 35 0 3 1643 507 33 0 0 chr6 138730395 138730456 -10786581 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1643 210 364 0 0 chr6 138730497 138730563 -10786474 - RSINE1 SINE B4 -98 67 2 3 1643 353 316 57 34 chr6 138730864 138731041 -10785996 - MIR3 SINE MIR -24 184 4 3 1643 423 0 0 0 chr6 138731429 138731476 -10785561 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1643 359 299 29 1 chr6 138731577 138731693 -10785344 - MLT1A0 LTR MaLR -6 402 253 3 1643 618 287 34 11 chr6 138731953 138732129 -10784908 - B3A SINE B2 -18 180 1 3 1643 24 32 0 0 chr6 138732527 138732558 -10784479 + AT_rich Low_complexity Low_complexity 1 31 0 3 1643 2110 228 4 4 chr6 138732640 138733067 -10783970 - Lx5 LINE L1 -73 6977 6567 3 1643 323 158 0 0 chr6 138733442 138733499 -10783538 + Lx8 LINE L1 7415 7471 -2 3 1643 694 240 153 20 chr6 138733573 138733769 -10783268 + ORR1E LTR MaLR 1 222 -137 3 1643 404 41 0 0 chr6 138733939 138733988 -10783049 - ORR1B1 LTR MaLR -8 386 338 3 1643 17412 55 1 3 chr6 138733988 138736949 -10780088 - L1Md_F2 LINE L1 -3 6579 3625 3 1643 22 0 0 0 chr6 138737471 138737493 -10779544 + GC_rich Low_complexity Low_complexity 1 22 0 3 1643 207 302 77 77 chr6 138737621 138737725 -10779312 - MIRb SINE MIR -54 214 111 3 1643 253 359 21 32 chr6 138739254 138739349 -10777688 + MER5A DNA MER1_type 82 175 -14 3 1643 249 320 0 0 chr6 138739350 138739447 -10777590 - L1ME3A LINE L1 -26 6147 6051 3 1643 27 29 0 0 chr6 138739573 138739607 -10777430 + AT_rich Low_complexity Low_complexity 1 34 0 3 1643 345 208 0 0 chr6 138739628 138739705 -10777332 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1643 327 328 0 8 chr6 138740133 138740265 -10776772 - Lx6 LINE L1 -8 7452 7322 3 1643 21 0 0 0 chr6 138740273 138740294 -10776743 + AT_rich Low_complexity Low_complexity 1 21 0 3 1643 189 0 0 0 chr6 138740488 138740509 -10776528 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1643 1284 284 39 45 chr6 138740515 138740749 -10776288 - Lx7 LINE L1 -276 7420 7188 3 1643 5254 112 98 18 chr6 138740749 138741632 -10775405 - RMER17B LTR ERVK -4 954 1 3 1643 1284 284 39 45 chr6 138741632 138741887 -10775150 - Lx7 LINE L1 -509 7187 6934 3 1643 1145 220 36 60 chr6 138741887 138742091 -10774946 + L1_Mur3 LINE L1 4082 4285 -1595 3 1643 369 0 0 0 chr6 138742091 138742132 -10774905 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 3 1643 1145 220 36 60 chr6 138742132 138742313 -10774724 + L1_Mur3 LINE L1 4286 4458 -1422 3 1643 458 17 0 17 chr6 138742404 138742464 -10774573 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 3 1643 5012 80 7 9 chr6 138742465 138743138 -10773899 - Lx3_Mus LINE L1 -21 6988 6317 4 1643 243 330 0 62 chr6 138743485 138743582 -10773455 - ID_B1 SINE B4 -52 172 82 4 1643 24 0 0 0 chr6 138743598 138743622 -10773415 + AT_rich Low_complexity Low_complexity 1 24 0 4 1643 263 366 60 22 chr6 138743779 138743913 -10773124 - B4A SINE B4 -141 151 13 4 1643 306 330 87 32 chr6 138744042 138744261 -10772776 - L1MC LINE L1 -2254 3892 3662 4 1643 561 339 58 74 chr6 138744543 138744801 -10772236 - B4A SINE B4 0 292 39 4 1643 330 87 0 0 chr6 138744993 138745039 -10771998 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1643 288 375 33 0 chr6 138746668 138746788 -10770249 - ID_B1 SINE B4 -3 221 98 4 1643 288 0 0 0 chr6 138747895 138747927 -10769110 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1643 3351 252 17 31 chr6 138747927 138748806 -10768231 + Lx9 LINE L1 6597 7463 -181 4 1643 315 0 0 0 chr6 138748806 138748841 -10768196 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1643 369 307 88 0 chr6 138751236 138751373 -10765664 + RSINE1 SINE B4 5 153 -12 4 1643 523 312 139 62 chr6 138751829 138751879 -10765158 + MTEa LTR MaLR 1 50 -329 4 1643 573 15 0 0 chr6 138751879 138751945 -10765092 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1643 523 312 139 62 chr6 138751945 138752246 -10764791 + MTEa LTR MaLR 51 379 0 4 1643 2036 101 31 3 chr6 138752721 138753039 -10763998 - L1_Mus3 LINE L1 0 6638 6312 4 1643 213 318 78 52 chr6 138753178 138753294 -10763743 + B4 SINE B4 5 123 -169 4 1643 4851 199 45 33 chr6 138753858 138754948 -10762089 - Lx3C LINE L1 -2 6974 5872 4 1643 2394 152 0 15 chr6 138754948 138755355 -10761682 + L1_Mur2 LINE L1 5268 5668 -209 4 1643 661 279 22 32 chr6 138755355 138755540 -10761497 + B3 SINE B2 16 198 -18 4 1643 410 0 20 0 chr6 138755540 138755590 -10761447 + (TAAAA)n Simple_repeat Simple_repeat 3 53 0 4 1643 6020 188 19 99 chr6 138755735 138757972 -10759065 - L1_Mur2 LINE L1 -1 5882 4010 4 1643 239 290 186 17 chr6 138758614 138759141 -10757896 - L1M5 LINE L1 -2678 3468 2853 4 1643 856 322 146 30 chr6 138759639 138760275 -10756762 - Lx8 LINE L1 -305 7168 6459 4 1643 247 262 67 10 chr6 138760283 138760387 -10756650 - L1MEc LINE L1 -3364 2955 2846 4 1643 195 298 23 23 chr6 138760409 138760495 -10756542 - L3 LINE CR1 -382 4107 4022 4 1643 334 291 111 10 chr6 138760726 138760924 -10756113 - L1MEc LINE L1 -4113 2287 2070 4 1643 222 314 20 0 chr6 138761104 138761155 -10755882 + B1F1 SINE Alu 2 53 -96 4 1643 252 0 93 0 chr6 138761264 138761307 -10755730 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1643 239 277 0 29 chr6 138761416 138761520 -10755517 + (TA)n Simple_repeat Simple_repeat 2 102 0 4 1643 5907 111 8 17 chr6 138761520 138762424 -10754613 - Lx LINE L1 0 6654 5759 4 1643 23 0 0 0 chr6 138762477 138762500 -10754537 + AT_rich Low_complexity Low_complexity 1 23 0 4 1643 288 133 0 0 chr6 138762623 138762683 -10754354 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 4 1643 410 36 18 0 chr6 138762886 138762942 -10754095 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1643 738 284 111 41 chr6 138763307 138763649 -10753388 - ORR1D2 LTR MaLR 0 370 5 4 1643 404 176 0 21 chr6 138764548 138764641 -10752396 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 4 1643 771 282 41 0 chr6 138764642 138764837 -10752200 - B3 SINE B2 -3 213 11 4 1643 282 29 0 0 chr6 138764849 138764884 -10752153 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1643 1193 183 141 91 chr6 138765592 138765783 -10751254 + RMER6B LTR ERVK 1 170 -291 4 1643 6499 49 1 5 chr6 138765783 138766599 -10750438 + L1Md_F2 LINE L1 5770 6582 0 4 1643 1193 183 141 91 chr6 138766599 138766846 -10750191 + RMER6B LTR ERVK 171 461 0 4 1643 180 0 0 0 chr6 138766869 138766889 -10750148 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1643 511 218 82 0 chr6 138766907 138767017 -10750020 - B1_Mus1 SINE Alu -7 141 23 4 1643 1958 230 53 13 chr6 138767066 138767538 -10749499 + Lx5 LINE L1 6555 7045 -5 4 1643 11332 21 0 4 chr6 138767622 138768954 -10748083 + L1Md_T LINE L1 4260 5586 -297 4 1643 8405 34 0 0 chr6 138768954 138769947 -10747090 + L1Md_T LINE L1 5587 6579 -3 4 1643 504 332 9 55 chr6 138769973 138770214 -10746823 - MLT2B3 LTR ERVL -263 252 19 4 1643 1410 52 0 0 chr6 138770256 138770429 -10746608 - L1Md_F2 LINE L1 -291 6291 6119 4 1643 424 68 0 0 chr6 138770429 138770488 -10746549 + L1Md_F2 LINE L1 6512 6570 -12 4 1643 44 20 0 0 chr6 138770806 138770857 -10746180 + AT_rich Low_complexity Low_complexity 1 51 0 4 1643 336 111 0 0 chr6 138771061 138771115 -10745922 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1643 501 288 106 0 chr6 138771119 138771251 -10745786 - B3A SINE B2 -48 150 5 4 1643 2642 166 29 170 chr6 138771850 138772654 -10744383 - RMER6C LTR ERVK 0 690 1 4 1643 24 0 0 0 chr6 138774233 138774257 -10742780 + AT_rich Low_complexity Low_complexity 1 24 0 4 1643 34 42 0 0 chr6 138775265 138775313 -10741724 + AT_rich Low_complexity Low_complexity 1 48 0 4 1643 504 146 0 0 chr6 138776043 138776146 -10740891 + (TG)n Simple_repeat Simple_repeat 2 104 0 4 1643 50 18 0 0 chr6 138776211 138776268 -10740769 + AT_rich Low_complexity Low_complexity 1 57 0 4 1643 3268 189 46 18 chr6 138776320 138776990 -10740047 - Lx4A LINE L1 0 7058 6370 4 1643 217 68 0 43 chr6 138776993 138777039 -10739998 + (TTTTG)n Simple_repeat Simple_repeat 5 48 0 4 1643 4429 146 15 38 chr6 138777044 138778089 -10738948 - Lx4A LINE L1 -690 6368 5340 4 1643 3732 148 30 35 chr6 138778086 138778827 -10738210 + L1_Mur2 LINE L1 4390 5126 -751 4 1643 1655 259 62 41 chr6 138779619 138779705 -10737332 - RLTR20C LTR ERVK -1 533 446 4 1643 525 16 0 0 chr6 138779705 138779767 -10737270 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1643 1655 259 62 41 chr6 138779767 138780196 -10736841 - RLTR20C LTR ERVK -89 445 9 4 1643 270 0 0 0 chr6 138780296 138780326 -10736711 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1643 21 71 0 0 chr6 138780729 138780771 -10736266 + AT_rich Low_complexity Low_complexity 1 42 0 4 1643 442 298 104 19 chr6 138781129 138781389 -10735648 + L1M4 LINE L1 685 966 -5576 4 1643 473 314 7 35 chr6 138781799 138781941 -10735096 + ID_B1 SINE B4 82 219 -5 4 1643 402 125 0 0 chr6 138781953 138782033 -10735004 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1643 195 139 0 0 chr6 138783164 138783200 -10733837 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 4 1643 28 0 0 0 chr6 138785047 138785075 -10731962 + AT_rich Low_complexity Low_complexity 1 28 0 4 1643 243 0 0 0 chr6 138786258 138786285 -10730752 + (CCA)n Simple_repeat Simple_repeat 3 29 0 4 1643 2659 176 109 68 chr6 138786329 138786946 -10730091 + RLTR26 LTR ERVK 1 642 0 4 1643 184 353 29 0 chr6 138787446 138787514 -10729523 - MIRc SINE MIR -116 152 83 4 1643 22 35 0 0 chr6 138788965 138788994 -10728043 + AT_rich Low_complexity Low_complexity 1 29 0 4 1643 315 0 0 0 chr6 138789298 138789333 -10727704 + (TTA)n Simple_repeat Simple_repeat 3 37 0 4 1643 193 287 58 107 chr6 138789567 138789688 -10727349 + MIR SINE MIR 84 198 -64 4 1643 220 125 25 0 chr6 138789789 138789829 -10727208 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1643 404 350 6 6 chr6 138789887 138790045 -10726992 + RSINE1 SINE B4 4 161 -4 4 1643 5276 79 11 0 chr6 138790354 138791061 -10725976 - L1_Mus1 LINE L1 0 6567 5853 4 1643 3853 81 6 6 chr6 138791061 138791584 -10725453 + L1_Mus1 LINE L1 5301 5823 -60 4 1643 4325 178 64 11 chr6 138792444 138793576 -10723461 - Lx5 LINE L1 -413 6637 5438 4 1643 1234 224 61 18 chr6 138793582 138793915 -10723122 + Lx5 LINE L1 6656 7047 -3 4 1643 1020 76 0 0 chr6 138793962 138794094 -10722943 - B1_Mus2 SINE Alu -6 141 10 4 1643 1728 95 8 4 chr6 138794467 138794720 -10722317 - L1_Mus3 LINE L1 0 6638 6385 4 1643 24 0 0 0 chr6 138795886 138795910 -10721127 + AT_rich Low_complexity Low_complexity 1 24 0 4 1643 703 197 6 32 chr6 138796330 138796487 -10720550 - URR1B DNA MER1_type 0 225 73 4 1643 342 0 0 0 chr6 138796556 138796594 -10720443 + (CATTT)n Simple_repeat Simple_repeat 4 41 0 4 1643 406 342 85 48 chr6 138796888 138797263 -10719774 - L1M2 LINE L1 -3624 3224 2836 4 1643 22 0 0 0 chr6 138797489 138797511 -10719526 + AT_rich Low_complexity Low_complexity 1 22 0 4 1643 532 174 13 0 chr6 138797750 138797905 -10719132 + (TCTA)n Simple_repeat Simple_repeat 2 158 0 4 1643 781 287 119 17 chr6 138797975 138798319 -10718718 + MTE2b LTR MaLR 1 379 0 4 1643 213 262 30 15 chr6 138798564 138798630 -10718407 + CT-rich Low_complexity Low_complexity 4 70 0 4 1643 233 317 0 0 chr6 138798677 138798737 -10718300 - L1_Rod LINE L1 -4017 1830 1771 4 1643 360 187 0 0 chr6 138798778 138798901 -10718136 + CT-rich Low_complexity Low_complexity 1 123 0 4 1643 203 156 0 0 chr6 138798902 138798934 -10718103 + (CTAA)n Simple_repeat Simple_repeat 3 34 0 4 1643 250 167 19 0 chr6 138798940 138798998 -10718039 - L1M2 LINE L1 -4522 2327 2283 4 1643 207 162 0 0 chr6 138799436 138799473 -10717564 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1643 227 243 42 14 chr6 138799619 138799690 -10717347 + B1F1 SINE Alu 77 149 0 4 1643 200 122 24 0 chr6 138800913 138800954 -10716083 + (TAA)n Simple_repeat Simple_repeat 3 44 0 4 1643 407 342 134 30 chr6 138801193 138801947 -10715090 - L2 LINE L2 -761 2658 1827 4 1643 284 65 0 42 chr6 138802412 138802460 -10714577 + (TATG)n Simple_repeat Simple_repeat 2 47 0 4 1643 28 0 0 0 chr6 138802843 138802871 -10714166 + AT_rich Low_complexity Low_complexity 1 28 0 4 1643 378 0 0 0 chr6 138803273 138803315 -10713722 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1643 293 347 69 40 chr6 138804028 138804202 -10712835 + MIRb SINE MIR 1 179 -89 4 1643 333 0 0 0 chr6 138804431 138804468 -10712569 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1644 446 318 70 30 chr6 138807350 138807551 -10709486 + B3 SINE B2 2 210 -6 4 1644 440 218 92 111 chr6 138807714 138807931 -10709106 + RLTR20A1 LTR ERVK 139 351 -212 4 1644 542 259 74 13 chr6 138808805 138808859 -10708178 + RLTR20A1 LTR ERVK 392 446 -105 4 1644 414 0 0 0 chr6 138808859 138808905 -10708132 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1644 542 259 74 13 chr6 138808905 138808999 -10708038 + RLTR20A1 LTR ERVK 447 548 -3 4 1644 552 291 114 30 chr6 138809002 138809204 -10707833 + MTD LTR MaLR 6 224 -195 5 1644 269 354 0 29 chr6 138809617 138809719 -10707318 + RSINE1 SINE B4 3 101 -64 5 1644 798 329 6 82 chr6 138810822 138810981 -10706056 - B4A SINE B4 0 292 138 5 1644 2816 44 0 3 chr6 138810981 138811324 -10705713 + ORR1A0 LTR MaLR 1 342 -4 5 1644 798 329 6 82 chr6 138811324 138811479 -10705558 - B4A SINE B4 -155 137 2 5 1644 367 149 66 26 chr6 138811843 138811919 -10705118 + L1M3e LINE L1 2004 2082 -4948 5 1644 459 0 0 0 chr6 138811945 138811996 -10705041 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1644 224 165 82 0 chr6 138812289 138812374 -10704663 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 1644 278 319 46 8 chr6 138812461 138812630 -10704407 + L1M3e LINE L1 2462 2612 -4495 5 1644 307 358 41 36 chr6 138812737 138812931 -10704106 + L1M3e LINE L1 2354 2548 -4560 5 1644 1844 318 78 41 chr6 138812998 138813959 -10703078 + Lx8 LINE L1 6472 7468 -5 5 1644 7853 120 31 16 chr6 138813971 138815453 -10701584 + Lx2 LINE L1 5331 6834 -163 5 1644 294 102 16 20 chr6 138815461 138815528 -10701509 + Lx2 LINE L1 6938 6997 0 5 1644 1067 212 45 4 chr6 138815538 138815830 -10701207 - Lx4B LINE L1 -821 6237 5938 5 1644 1793 102 77 30 chr6 138815831 138816203 -10700834 - L1_Mus3 LINE L1 -182 6456 6192 5 1644 374 241 0 0 chr6 138816195 138816282 -10700755 - Lx4B LINE L1 -1084 5974 5888 5 1644 2855 221 46 23 chr6 138816281 138817026 -10700011 + Lx2B LINE L1 6220 6981 -19 5 1644 32 67 0 0 chr6 138817218 138817278 -10699759 + AT_rich Low_complexity Low_complexity 1 60 0 5 1644 361 281 62 62 chr6 138817465 138817609 -10699428 - Tigger5 DNA MER2_type -83 2323 2180 5 1644 1111 236 122 57 chr6 138817621 138817792 -10699245 - ORR1D1 LTR MaLR 0 374 172 5 1644 864 77 0 0 chr6 138817792 138817909 -10699128 + (AGGGGG)n Simple_repeat Simple_repeat 6 122 0 5 1644 1443 45 0 0 chr6 138817911 138818090 -10698947 + (GGGAGA)n Simple_repeat Simple_repeat 2 180 0 5 1644 1111 236 122 57 chr6 138818090 138818266 -10698771 - ORR1D1 LTR MaLR -203 171 1 5 1644 1128 56 0 0 chr6 138819689 138819833 -10697204 + (TA)n Simple_repeat Simple_repeat 1 144 0 5 1644 246 360 0 0 chr6 138820635 138820710 -10696327 - ID2 SINE ID -2 81 7 5 1644 224 329 103 64 chr6 138822955 138823111 -10693926 - RSINE1 SINE B4 -2 163 2 5 1644 411 250 52 0 chr6 138823585 138823681 -10693356 - PB1D7 SINE Alu -17 103 3 5 1644 218 281 0 0 chr6 138824130 138824194 -10692843 - MIR SINE MIR -56 206 143 5 1644 505 321 0 35 chr6 138824242 138824384 -10692653 - RSINE1 SINE B4 -16 149 13 5 1644 680 292 11 23 chr6 138824603 138824778 -10692259 + ORR1E LTR MaLR 3 175 -184 5 1644 746 50 10 0 chr6 138824820 138824919 -10692118 + (TC)n Simple_repeat Simple_repeat 2 101 0 5 1644 253 224 78 13 chr6 138824919 138824996 -10692041 + ORR1E LTR MaLR 284 365 -5 5 1644 482 327 97 27 chr6 138825001 138825629 -10691408 + L1M2 LINE L1 3721 4392 -1751 5 1644 610 284 43 68 chr6 138825731 138826082 -10690955 + L1M2 LINE L1 4663 5004 -1139 5 1644 362 275 238 13 chr6 138829667 138830058 -10686979 + L1M2 LINE L1 2254 2732 -3411 5 1644 21 0 0 0 chr6 138830078 138830099 -10686938 + AT_rich Low_complexity Low_complexity 1 21 0 5 1644 234 0 0 0 chr6 138830295 138830321 -10686716 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1644 348 271 20 30 chr6 138830503 138830566 -10686471 - B4 SINE B4 -142 150 89 5 1644 6052 89 15 9 chr6 138830566 138831424 -10685613 + L1_Mus3 LINE L1 5770 6632 -6 5 1644 348 271 20 30 chr6 138831424 138831459 -10685578 - B4 SINE B4 -204 88 53 5 1644 236 211 0 50 chr6 138831459 138831519 -10685518 + L1M2 LINE L1 3811 3867 -2273 5 1644 566 246 79 16 chr6 138831537 138831727 -10685310 + L1M2 LINE L1 3940 4141 -2002 5 1644 539 304 89 47 chr6 138831781 138832349 -10684688 + L1MA8 LINE L1 5660 6268 -23 5 1644 210 333 122 20 chr6 138832558 138832656 -10684381 - MIRc SINE MIR -113 155 48 5 1644 27 62 0 0 chr6 138832734 138832782 -10684255 + AT_rich Low_complexity Low_complexity 1 48 0 5 1644 555 271 105 35 chr6 138833151 138833323 -10683714 + B3 SINE B2 4 187 -29 5 1644 222 220 32 48 chr6 138833318 138833380 -10683657 - B1F1 SINE Alu -85 64 4 5 1644 315 297 20 6 chr6 138833358 138833477 -10683560 + PB1D10 SINE Alu 4 127 -22 5 1644 26 30 0 0 chr6 138835307 138835340 -10681697 + AT_rich Low_complexity Low_complexity 1 33 0 5 1644 315 122 0 0 chr6 138835429 138835478 -10681559 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1644 301 309 55 0 chr6 138835481 138835591 -10681446 + Lx8 LINE L1 6847 6962 -511 5 1644 3943 62 2 4 chr6 138835595 138836116 -10680921 - L1Md_F3 LINE L1 0 6584 6065 5 1644 3250 42 2 0 chr6 138836116 138836519 -10680518 + L1Md_F3 LINE L1 5651 6054 -530 5 1644 458 345 112 19 chr6 138836536 138836964 -10680073 + Lx8 LINE L1 6995 7462 -11 5 1644 183 80 0 0 chr6 138837017 138837042 -10679995 + (CCA)n Simple_repeat Simple_repeat 1 25 0 5 1644 423 132 0 0 chr6 138837361 138837429 -10679608 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1644 822 56 24 0 chr6 138838638 138838763 -10678274 + (TATG)n Simple_repeat Simple_repeat 2 129 0 5 1644 433 284 29 36 chr6 138838771 138838910 -10678127 - B3A SINE B2 -47 151 14 5 1644 477 34 0 0 chr6 138839215 138839274 -10677763 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1644 528 324 53 0 chr6 138840583 138840753 -10676284 + B4A SINE B4 1 179 -113 5 1644 26 0 0 0 chr6 138841276 138841302 -10675735 + AT_rich Low_complexity Low_complexity 1 26 0 5 1644 222 263 26 0 chr6 138841566 138841642 -10675395 + (TA)n Simple_repeat Simple_repeat 1 78 0 5 1644 1022 63 7 0 chr6 138841841 138841984 -10675053 + (TC)n Simple_repeat Simple_repeat 2 145 0 5 1644 195 162 0 0 chr6 138843010 138843047 -10673990 + T-rich Low_complexity Low_complexity 1 37 0 5 1644 214 205 0 0 chr6 138843416 138843455 -10673582 + T-rich Low_complexity Low_complexity 1 39 0 5 1644 515 201 6 0 chr6 138843688 138843852 -10673185 + (CA)n Simple_repeat Simple_repeat 1 165 0 5 1644 200 311 0 0 chr6 138844375 138844436 -10672601 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1644 399 41 0 0 chr6 138844618 138844667 -10672370 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1644 1152 68 0 0 chr6 138844968 138845114 -10671923 + B1_Mus2 SINE Alu 2 147 0 5 1644 486 0 0 0 chr6 138845125 138845179 -10671858 + (TAA)n Simple_repeat Simple_repeat 2 55 0 5 1644 233 322 0 22 chr6 138845432 138845524 -10671513 + GA-rich Low_complexity Low_complexity 1 90 0 5 1644 373 343 22 44 chr6 138845525 138845708 -10671329 - L1M5 LINE L1 -3239 2907 2729 5 1644 252 0 0 0 chr6 138846440 138846468 -10670569 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1644 439 285 23 15 chr6 138846651 138846783 -10670254 + B3 SINE B2 2 134 -82 5 1644 700 191 182 21 chr6 138846832 138847024 -10670013 + URR1B DNA MER1_type 1 223 -2 5 1644 4341 168 37 53 chr6 138848067 138849041 -10667996 + L1_Mur3 LINE L1 4285 5242 -638 5 1644 266 234 0 45 chr6 138849048 138849115 -10667922 + RLTR11A LTR ERVK 1 64 -464 5 1644 1884 214 96 17 chr6 138849162 138849723 -10667314 + MYSERV6-int LTR ERVK 8362 8900 -59 5 1644 758 265 18 27 chr6 138849750 138849971 -10667066 + RLTR11A2 LTR ERVK 1 219 -308 5 1644 384 365 73 58 chr6 138849946 138850342 -10666695 + MLT1A1-int LTR MaLR 149 550 -1185 5 1644 386 278 7 67 chr6 138850355 138850490 -10666547 + B1_Mus1 SINE Alu 14 140 -8 5 1644 445 344 74 35 chr6 138850529 138850817 -10666220 + MLT1A1-int LTR MaLR 1475 1735 0 5 1644 227 361 85 104 chr6 138850890 138851054 -10665983 + B4A SINE B4 10 170 -122 5 1644 431 138 11 0 chr6 138851091 138851178 -10665859 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1644 538 348 77 42 chr6 138851181 138851493 -10665544 + MLT1A1 LTR MaLR 74 396 -12 5 1644 285 75 0 0 chr6 138852219 138852259 -10664778 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 5 1644 216 284 53 13 chr6 138852670 138852745 -10664292 + B1F SINE Alu 45 122 -27 5 1644 201 74 0 0 chr6 138852796 138852823 -10664214 + (TCCCC)n Simple_repeat Simple_repeat 4 30 0 5 1644 1068 111 0 0 chr6 138852824 138852986 -10664051 + (TCTCC)n Simple_repeat Simple_repeat 3 164 0 5 1644 560 14 14 0 chr6 138854918 138854987 -10662050 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1644 201 74 0 0 chr6 138855032 138855059 -10661978 + (CATA)n Simple_repeat Simple_repeat 4 30 0 5 1644 692 82 33 0 chr6 138855093 138855215 -10661822 + (TAGA)n Simple_repeat Simple_repeat 4 129 0 5 1644 487 204 11 21 chr6 138856542 138856637 -10660400 + MTD LTR MaLR 267 360 -59 5 1644 4312 77 0 2 chr6 138857473 138858044 -10658993 - L1_Mus1 LINE L1 0 6567 5998 5 1644 215 61 0 29 chr6 138859043 138859077 -10657960 + (AGGGGG)n Simple_repeat Simple_repeat 6 38 0 5 1644 235 231 0 0 chr6 138860002 138860054 -10656983 - L1M2 LINE L1 -473 5839 5788 5 1644 287 279 49 37 chr6 138860422 138860504 -10656533 + RSINE1 SINE B4 83 165 0 5 1644 1249 274 111 0 chr6 138860796 138861165 -10655872 - MTD LTR MaLR 0 419 10 5 1644 394 291 112 54 chr6 138862809 138863085 -10653952 - B4A SINE B4 0 292 1 5 1644 527 78 13 0 chr6 138864132 138864209 -10652828 + (TA)n Simple_repeat Simple_repeat 2 79 0 5 1644 369 0 0 0 chr6 138864209 138864249 -10652788 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1644 207 167 0 0 chr6 138864298 138864340 -10652697 + A-rich Low_complexity Low_complexity 1 42 0 5 1644 22 0 0 0 chr6 138864877 138864899 -10652138 + AT_rich Low_complexity Low_complexity 1 22 0 5 1644 648 72 48 0 chr6 138865193 138865318 -10651719 + (TCTA)n Simple_repeat Simple_repeat 4 134 0 5 1644 23 33 0 0 chr6 138866041 138866071 -10650966 + AT_rich Low_complexity Low_complexity 1 30 0 5 1644 4983 44 73 0 chr6 138867397 138868031 -10649006 - L1Md_F3 LINE L1 -4 6580 5901 5 1644 212 111 0 22 chr6 138869087 138869133 -10647904 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 5 1644 274 280 27 0 chr6 138869365 138869440 -10647597 - B3A SINE B2 -114 84 8 5 1644 2098 167 59 4 chr6 138869799 138870321 -10646716 + L1_Mur2 LINE L1 4878 5487 -399 5 1644 23 33 0 0 chr6 138870431 138870461 -10646576 + AT_rich Low_complexity Low_complexity 1 30 0 5 1644 513 0 0 0 chr6 138871863 138871920 -10645117 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1644 308 361 93 10 chr6 138871933 138872126 -10644911 - MLT1A1 LTR MaLR -197 211 3 5 1644 198 103 0 0 chr6 138872559 138872588 -10644449 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 5 1644 587 232 7 21 chr6 138872595 138872736 -10644301 - B1_Mus1 SINE Alu -8 140 2 5 1644 7592 60 3 16 chr6 138872757 138873747 -10643290 - L1Md_F2 LINE L1 -12 6570 5594 5 1644 4357 84 13 1 chr6 138873744 138874371 -10642666 + L1_Mm LINE L1 5022 5686 -626 6 1644 503 254 51 29 chr6 138874475 138874613 -10642424 - B1F2 SINE Alu -8 141 1 6 1644 182 37 0 36 chr6 138875364 138875392 -10641645 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1644 24 0 0 0 chr6 138877252 138877276 -10639761 + AT_rich Low_complexity Low_complexity 1 24 0 6 1644 13927 41 19 3 chr6 138877340 138879759 -10637278 - L1Md_F2 LINE L1 -12 6570 4134 6 1644 2280 72 0 0 chr6 138879758 138880064 -10636973 + L1Md_F2 LINE L1 3813 4118 -1765 6 1644 486 0 0 0 chr6 138880094 138880148 -10636889 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1644 3080 154 49 0 chr6 138880161 138880693 -10636344 - Lx3C LINE L1 -7 6969 6412 6 1644 1158 333 52 9 chr6 138880765 138881299 -10635738 - Lx8 LINE L1 -532 6941 6385 6 1644 662 237 91 158 chr6 138881309 138881639 -10635398 - MTE2a LTR MaLR -68 311 4 6 1644 215 343 158 29 chr6 138881757 138881928 -10635109 + L2a LINE L2 3234 3426 0 6 1644 659 324 33 49 chr6 138882061 138882366 -10634671 - LTR16B LTR ERVL -163 300 1 6 1644 469 221 0 0 chr6 138883698 138883784 -10633253 + RMER1B Other Other 648 733 -333 6 1644 2990 113 17 15 chr6 138883802 138884267 -10632770 - Lx3A LINE L1 -10 6971 6506 6 1644 729 282 30 0 chr6 138884407 138884609 -10632428 + B3 SINE B2 9 216 0 6 1644 667 259 30 6 chr6 138884728 138884895 -10632142 - MTD LTR MaLR -235 184 14 6 1644 292 250 0 0 chr6 138884916 138884984 -10632053 + RMER15 LTR ERVL 435 502 -73 6 1644 501 17 0 0 chr6 138885013 138885071 -10631966 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1644 365 279 107 24 chr6 138885718 138885977 -10631060 + MLT1B LTR MaLR 69 348 -42 6 1644 21 0 0 0 chr6 138886785 138886806 -10630231 + AT_rich Low_complexity Low_complexity 1 21 0 6 1644 21 36 0 0 chr6 138887031 138887059 -10629978 + AT_rich Low_complexity Low_complexity 1 28 0 6 1644 252 368 94 0 chr6 138887179 138887296 -10629741 + B1F SINE Alu 19 146 -3 6 1644 218 364 36 9 chr6 138887486 138887597 -10629440 + L3 LINE CR1 4250 4363 -126 6 1644 236 348 34 41 chr6 138888187 138888334 -10628703 - MLT1F LTR MaLR 0 654 509 6 1644 301 384 40 27 chr6 138888418 138888640 -10628397 - MLT1F LTR MaLR -318 230 6 6 1644 272 195 61 17 chr6 138889537 138889652 -10627385 + (TAGA)n Simple_repeat Simple_repeat 3 122 0 6 1644 192 97 0 0 chr6 138889655 138889686 -10627351 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1644 214 248 54 41 chr6 138889768 138889915 -10627122 + (TAGA)n Simple_repeat Simple_repeat 3 151 0 6 1644 207 254 57 16 chr6 138889949 138890073 -10626964 + (TAGA)n Simple_repeat Simple_repeat 3 131 0 6 1644 245 223 58 35 chr6 138890095 138890267 -10626770 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 6 1644 2305 159 97 37 chr6 138890350 138890813 -10626224 - Lx4B LINE L1 -692 6366 5876 6 1644 3399 161 62 15 chr6 138890813 138891461 -10625576 + Lx4B LINE L1 6377 7054 -4 6 1644 197 125 25 0 chr6 138891464 138891487 -10625550 + (GGAAA)n Simple_repeat Simple_repeat 3 25 0 6 1644 786 50 0 0 chr6 138891487 138891586 -10625451 + (GGGGA)n Simple_repeat Simple_repeat 3 101 0 6 1644 197 125 25 0 chr6 138891586 138891602 -10625435 + (GGAAA)n Simple_repeat Simple_repeat 1 16 0 6 1644 1895 240 59 24 chr6 138891632 138892088 -10624949 + Lx6 LINE L1 6985 7456 -4 6 1644 1078 291 165 49 chr6 138892116 138892991 -10624046 - MTC-int LTR MaLR -200 1380 30 6 1644 417 301 13 59 chr6 138893040 138893192 -10623845 - MTD LTR MaLR -102 317 173 6 1644 337 344 24 0 chr6 138893622 138893747 -10623290 - ERVL-int LTR ERVL -486 5228 5101 6 1644 1001 297 40 9 chr6 138893902 138894228 -10622809 - ERVL-int LTR ERVL -828 4929 4594 6 1644 520 398 9 13 chr6 138894594 138894795 -10622242 + MLT2B3 LTR ERVL 310 511 -43 6 1644 747 127 0 0 chr6 138894795 138894913 -10622124 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 6 1644 520 398 9 13 chr6 138894913 138894940 -10622097 + MLT2B3 LTR ERVL 512 537 -17 6 1644 784 318 70 27 chr6 138895218 138895581 -10621456 - MLT2D LTR ERVL -41 526 9 6 1644 23 0 0 0 chr6 138896080 138896103 -10620934 + AT_rich Low_complexity Low_complexity 1 23 0 6 1644 243 0 0 0 chr6 138896897 138896924 -10620113 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1644 729 337 10 0 chr6 138897555 138897751 -10619286 - B3A SINE B2 0 198 1 6 1644 476 16 16 0 chr6 138897848 138897909 -10619128 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 6 1644 614 310 6 45 chr6 138898138 138898342 -10618695 + B3 SINE B2 3 185 -8 6 1644 21 0 0 0 chr6 138898486 138898507 -10618530 + AT_rich Low_complexity Low_complexity 1 21 0 6 1644 515 235 37 0 chr6 138898580 138898716 -10618321 - RMER5 LTR ERV1 -45 489 349 6 1644 23 33 0 0 chr6 138898906 138898936 -10618101 + AT_rich Low_complexity Low_complexity 1 30 0 6 1644 279 291 73 0 chr6 138899120 138899230 -10617807 - PB1D7 SINE Alu -1 119 2 6 1644 985 279 24 83 chr6 138899457 138899832 -10617205 - ORR1E LTR MaLR -6 353 1 6 1644 327 288 95 8 chr6 138899889 138900015 -10617022 - B3A SINE B2 -60 138 2 6 1644 243 0 0 0 chr6 138900658 138900685 -10616352 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1644 437 311 36 37 chr6 138901646 138901879 -10615158 + HAL1-2a_MD LINE L1 2312 2519 -505 6 1644 234 91 0 0 chr6 138901879 138901912 -10615125 + (CCA)n Simple_repeat Simple_repeat 3 35 0 6 1644 408 309 48 24 chr6 138901912 138901939 -10615098 + HAL1-2a_MD LINE L1 2477 2503 -521 6 1644 22 88 0 0 chr6 138902380 138902437 -10614600 + AT_rich Low_complexity Low_complexity 1 57 0 6 1644 301 222 106 43 chr6 138903263 138903324 -10613713 + Lx7 LINE L1 7252 7312 -384 6 1644 311 78 20 0 chr6 138903324 138903375 -10613662 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1644 301 222 106 43 chr6 138903375 138903407 -10613630 + Lx7 LINE L1 7313 7351 -345 6 1644 245 278 119 28 chr6 138903444 138903662 -10613375 + Lx9 LINE L1 7385 7622 -22 6 1644 275 404 65 36 chr6 138904025 138904439 -10612598 + MLT1C LTR MaLR 42 467 0 6 1644 468 340 28 14 chr6 138905349 138905492 -10611545 + RSINE1 SINE B4 4 148 -17 6 1644 1375 11 29 0 chr6 138905515 138905869 -10611168 + (TAGA)n Simple_repeat Simple_repeat 1 364 0 6 1644 1361 34 43 2 chr6 138905881 138907135 -10609902 + (TAGA)n Simple_repeat Simple_repeat 1 1305 0 6 1644 594 0 0 0 chr6 138907856 138907922 -10609115 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1644 888 294 34 8 chr6 138908995 138909262 -10607775 + MTC LTR MaLR 1 274 -147 6 1644 306 301 117 71 chr6 138910058 138910212 -10606825 - HAL1-3A_ME LINE L1 -414 2444 2284 6 1644 667 292 74 71 chr6 138911247 138911586 -10605451 + ORR1E LTR MaLR 14 353 -6 6 1644 288 291 68 0 chr6 138912539 138912656 -10604381 + L1_Mur3 LINE L1 3663 3787 -2093 6 1644 251 273 13 13 chr6 138912675 138912753 -10604284 + L1_Mur3 LINE L1 4691 4768 -1109 6 1644 823 304 66 55 chr6 138912919 138913651 -10603386 + L1M2 LINE L1 4061 4800 -1343 6 1644 789 11 0 0 chr6 138913758 138913848 -10603189 + (GAA)n Simple_repeat Simple_repeat 3 92 0 6 1644 768 11 0 0 chr6 138914638 138914727 -10602310 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 1644 3588 116 16 14 chr6 138914781 138915351 -10601686 + Lx2 LINE L1 6426 6996 -1 6 1644 1741 83 80 31 chr6 138916875 138917161 -10599876 - MTB LTR MaLR -23 377 78 6 1644 886 149 0 17 chr6 138917238 138917416 -10599621 + G-rich Low_complexity Low_complexity 2 176 0 6 1644 707 121 4 67 chr6 138917416 138917654 -10599383 + GA-rich Low_complexity Low_complexity 1 223 0 6 1644 357 228 19 32 chr6 138917659 138917813 -10599224 + G-rich Low_complexity Low_complexity 1 152 0 6 1644 852 325 40 20 chr6 138917814 138918118 -10598919 - MTD LTR MaLR -108 311 2 6 1644 211 295 132 35 chr6 138918582 138918726 -10598311 - L2a LINE L2 -1 3425 3268 6 1644 623 256 161 0 chr6 138918878 138919058 -10597979 - B3 SINE B2 -7 209 1 6 1644 32 0 0 0 chr6 138919062 138919094 -10597943 + AT_rich Low_complexity Low_complexity 1 32 0 6 1644 2886 146 0 0 chr6 138919099 138919545 -10597492 - Lx4A LINE L1 -465 6593 6148 6 1644 1461 197 25 14 chr6 138919595 138919878 -10597159 + Lx4A LINE L1 6613 6898 -160 6 1644 1051 112 62 0 chr6 138919879 138920039 -10596998 + B2_Mm1t SINE B2 2 171 -22 6 1644 324 142 12 34 chr6 138920138 138920204 -10596833 + B2_Mm2 SINE B2 46 115 -83 6 1644 198 0 0 0 chr6 138920220 138920242 -10596795 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 6 1644 606 207 13 76 chr6 138920248 138920405 -10596632 + Lx4A LINE L1 6912 7058 0 6 1644 2598 188 5 32 chr6 138920484 138921084 -10595953 - L1_Mur2 LINE L1 -475 5405 4822 6 1644 714 115 0 0 chr6 138921095 138921199 -10595838 - BGLII LTR ERVK 0 421 318 6 1644 5591 223 177 9 chr6 138921206 138922218 -10594819 - L1_Mur2 LINE L1 -2527 3350 2056 6 1644 534 82 0 0 chr6 138922218 138922303 -10594734 + (TG)n Simple_repeat Simple_repeat 1 85 0 6 1644 5591 224 165 12 chr6 138922303 138923234 -10593803 - L1_Mur2 LINE L1 -3822 2055 1087 6 1644 285 51 0 0 chr6 138923234 138923273 -10593764 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1644 1097 79 0 0 chr6 138923273 138923412 -10593625 - B1_Mus1 SINE Alu -9 139 1 6 1644 895 234 70 34 chr6 138923412 138923522 -10593515 - L1_Mur2 LINE L1 -6000 1086 975 6 1644 439 275 36 73 chr6 138923697 138923720 -10593317 - B2_Mm2 SINE B2 -9 186 163 6 1644 384 40 0 0 chr6 138923720 138923770 -10593267 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1644 700 276 42 6 chr6 138923770 138923938 -10593099 - B3A SINE B2 -23 175 2 6 1644 664 286 31 83 chr6 138924174 138924403 -10592634 + MTEa LTR MaLR 1 217 -162 6 1644 633 27 0 0 chr6 138924872 138924947 -10592090 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1644 984 67 0 57 chr6 138925515 138925673 -10591364 - L1Md_F2 LINE L1 -1 6581 6433 6 1644 224 72 0 45 chr6 138925674 138925718 -10591319 + (TTA)n Simple_repeat Simple_repeat 1 42 0 6 1644 1656 137 19 57 chr6 138925739 138926056 -10590981 - Lx3A LINE L1 -11 6970 6666 6 1644 2210 118 0 17 chr6 138926058 138926411 -10590626 + L1_Mur1 LINE L1 5249 5595 -291 6 1644 235 118 0 0 chr6 138926404 138926438 -10590599 - L1_Mur2 LINE L1 -270 5607 5574 6 1644 25 31 0 0 chr6 138926628 138926660 -10590377 + AT_rich Low_complexity Low_complexity 1 32 0 6 1644 7273 77 8 13 chr6 138926871 138928013 -10589024 - L1Md_F2 LINE L1 0 6582 5447 6 1644 27757 52 14 22 chr6 138928008 138932492 -10584545 - L1Md_T LINE L1 -2 6580 2137 6 1644 1189 75 103 0 chr6 138932882 138933056 -10583981 - L1_Mus1 LINE L1 0 6567 6376 6 1644 685 296 18 23 chr6 138933144 138933365 -10583672 + ID_B1 SINE B4 3 222 -2 6 1644 251 123 0 44 chr6 138933366 138933434 -10583603 + A-rich Low_complexity Low_complexity 1 65 0 7 1644 502 325 50 20 chr6 138933535 138933733 -10583304 - B3 SINE B2 -10 206 3 7 1644 685 296 18 23 chr6 138933967 138934188 -10582849 + ID_B1 SINE B4 3 222 -2 7 1644 251 123 0 44 chr6 138934189 138934257 -10582780 + A-rich Low_complexity Low_complexity 1 65 0 7 1644 502 325 50 20 chr6 138934358 138934556 -10582481 - B3 SINE B2 -10 206 3 7 1644 486 320 81 17 chr6 138934759 138935055 -10581982 + Tigger13a DNA MER2_type 309 623 -148 7 1644 207 0 0 0 chr6 138935549 138935572 -10581465 + (TC)n Simple_repeat Simple_repeat 2 24 0 7 1644 553 128 0 16 chr6 138935574 138935701 -10581336 + (GA)n Simple_repeat Simple_repeat 2 126 0 7 205 1195 108 26 8 chr6 138936276 138936485 -10580552 - Lx3_Mus LINE L1 0 7009 6754 7 1645 258 333 0 0 chr6 138936510 138936591 -10580446 + ID2 SINE ID 3 83 0 7 1645 2117 181 7 26 chr6 138936713 138937128 -10579909 - MTB_Mm LTR MaLR 0 407 1 7 1645 255 338 46 20 chr6 138937469 138937620 -10579417 + Tigger14a DNA MER2_type 162 316 -8 7 1645 22 0 0 0 chr6 138938540 138938562 -10578475 + AT_rich Low_complexity Low_complexity 1 22 0 7 1645 7641 49 20 3 chr6 138938939 138940001 -10577036 - L1Md_F3 LINE L1 -14 6570 5491 7 1645 6931 80 34 11 chr6 138940874 138941850 -10575187 - Lx3_Mus LINE L1 0 7009 6012 7 1645 18912 191 48 54 chr6 138942168 138943868 -10573169 - Lx5 LINE L1 0 7050 5283 7 1645 1121 55 14 0 chr6 138943868 138944013 -10573024 - B1_Mm SINE Alu 0 147 1 7 1645 18912 171 21 134 chr6 138944013 138944785 -10572252 - Lx5 LINE L1 -595 5282 4632 7 1645 186 43 0 0 chr6 138944785 138944808 -10572229 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1645 18912 171 21 134 chr6 138944808 138945945 -10571092 - Lx5 LINE L1 -1246 4631 3490 7 1645 212 59 29 0 chr6 138945945 138945979 -10571058 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1645 18912 171 21 134 chr6 138945979 138946226 -10570811 - Lx5 LINE L1 -2388 3489 3317 7 1645 1099 82 0 13 chr6 138946226 138946375 -10570662 - B1_Mus1 SINE Alu 0 148 2 7 1645 18912 171 21 134 chr6 138946375 138947601 -10569436 - Lx5 LINE L1 -2561 3316 2296 7 1645 252 0 0 0 chr6 138947601 138947629 -10569408 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 7 1645 18912 180 28 106 chr6 138947629 138949302 -10567735 - Lx5 LINE L1 -3582 2295 778 7 1645 214 218 18 0 chr6 138949566 138949621 -10567416 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 7 1645 327 265 131 62 chr6 138949700 138949845 -10567192 - B4 SINE B4 -85 207 53 7 1645 220 375 0 0 chr6 138949817 138949881 -10567156 - RSINE1 SINE B4 -84 81 18 7 1645 586 295 66 115 chr6 138950064 138950412 -10566625 + MTEa LTR MaLR 34 364 -15 7 1645 267 103 0 0 chr6 138950754 138950793 -10566244 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1645 378 0 0 0 chr6 138951073 138951115 -10565922 + (TAA)n Simple_repeat Simple_repeat 1 42 0 7 1645 426 299 63 59 chr6 138952216 138952454 -10564583 + B4A SINE B4 1 239 -53 7 1645 22 0 0 0 chr6 138952543 138952565 -10564472 + AT_rich Low_complexity Low_complexity 1 22 0 7 1645 366 310 38 57 chr6 138952608 138952714 -10564323 + RSINE1 SINE B4 59 162 -3 7 1645 180 280 140 0 chr6 138953007 138953107 -10563930 + MIRb SINE MIR 116 229 -39 7 1645 1217 104 32 16 chr6 138954727 138954913 -10562124 + B2_Mm2 SINE B2 2 190 -5 7 1645 31 26 0 0 chr6 138955795 138955833 -10561204 + AT_rich Low_complexity Low_complexity 1 38 0 7 1645 348 83 0 0 chr6 138955839 138955887 -10561150 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1645 518 311 89 6 chr6 138956207 138956375 -10560662 - B3A SINE B2 -16 182 1 7 1645 180 0 0 0 chr6 138956428 138956448 -10560589 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 7 1645 529 342 89 0 chr6 138956846 138957115 -10559922 - Lx7 LINE L1 -1787 5909 5617 7 1645 1948 322 67 31 chr6 138957503 138958758 -10558279 + Lx8 LINE L1 6134 7439 -34 7 1645 294 29 0 0 chr6 138958758 138958793 -10558244 + (TA)n Simple_repeat Simple_repeat 2 36 0 7 1645 1948 322 67 31 chr6 138958793 138958827 -10558210 + Lx8 LINE L1 7440 7470 -3 7 1645 241 224 33 20 chr6 138960179 138960246 -10556791 + MIRb SINE MIR 111 176 -92 7 1645 24 0 0 0 chr6 138960807 138960831 -10556206 + AT_rich Low_complexity Low_complexity 1 24 0 7 1645 404 37 19 0 chr6 138960923 138960977 -10556060 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 7 1645 1113 63 0 7 chr6 138960977 138961113 -10555924 - B1_Mus2 SINE Alu -8 139 4 7 1645 207 149 0 41 chr6 138961389 138961438 -10555599 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1645 299 257 168 11 chr6 138961458 138961579 -10555458 - MIR SINE MIR -127 135 4 7 1645 375 23 0 0 chr6 138961654 138961698 -10555339 + (TAA)n Simple_repeat Simple_repeat 2 45 0 7 1645 40 67 0 0 chr6 138962308 138962383 -10554654 + AT_rich Low_complexity Low_complexity 1 75 0 7 1645 437 259 86 45 chr6 138962405 138962627 -10554410 - L1MA4 LINE L1 -17 6283 6053 7 1645 1224 27 0 0 chr6 138963015 138963163 -10553874 + (TC)n Simple_repeat Simple_repeat 1 148 0 7 1645 366 326 118 27 chr6 138963164 138963350 -10553687 - B3 SINE B2 -13 203 1 7 1645 404 290 78 31 chr6 138963626 138963754 -10553283 - ID_B1 SINE B4 -4 220 87 7 1645 934 71 79 0 chr6 138964201 138964328 -10552709 + B1_Mus1 SINE Alu 1 137 -11 7 1645 213 39 0 0 chr6 138964328 138964354 -10552683 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1645 333 0 0 0 chr6 138964449 138964486 -10552551 + (TTA)n Simple_repeat Simple_repeat 1 37 0 7 1645 1090 140 21 11 chr6 138964491 138964679 -10552358 - Lx3B LINE L1 -4 6969 6780 7 1645 1869 221 19 27 chr6 138964679 138965089 -10551948 - Lx7 LINE L1 -905 6791 6385 7 1645 7581 88 1 11 chr6 138965104 138966579 -10550458 - L1_Mus1 LINE L1 -1 6566 5101 7 1645 405 261 92 0 chr6 138966573 138966692 -10550345 - Lx7 LINE L1 -1316 6380 6251 7 1645 1258 203 118 81 chr6 138966690 138966976 -10550061 + Lx7 LINE L1 5397 5701 -179 7 1645 3203 69 0 12 chr6 138966976 138967401 -10549636 - BGLII LTR ERVK -1 420 1 7 1645 1258 232 106 60 chr6 138967401 138967715 -10549322 + Lx7 LINE L1 5698 6020 -1676 7 1645 185 94 0 30 chr6 138967777 138967810 -10549227 + (CTATT)n Simple_repeat Simple_repeat 4 35 0 7 1645 1867 310 62 28 chr6 138967974 138968750 -10548287 - MMAR1 DNA Mariner -484 802 1 7 1645 506 16 16 0 chr6 138969850 138969913 -10547124 + (TC)n Simple_repeat Simple_repeat 2 65 0 7 1645 212 128 21 21 chr6 138969979 138970027 -10547010 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 7 1645 535 250 78 0 chr6 138970027 138970143 -10546894 - B1_Mur1 SINE Alu -21 128 4 7 1645 389 267 68 83 chr6 138970153 138970187 -10546850 - B2_Mm2 SINE B2 -4 191 165 7 1645 474 18 0 0 chr6 138970187 138970242 -10546795 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1645 537 267 68 83 chr6 138970242 138970399 -10546638 - B3A SINE B2 -31 164 3 7 1645 1299 276 60 10 chr6 138971796 138972181 -10544856 - MTD LTR MaLR -15 404 1 7 1645 347 281 226 48 chr6 138973660 138973780 -10543257 + B3A SINE B2 1 147 -51 7 1645 261 0 0 0 chr6 138973780 138973809 -10543228 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1645 347 281 226 48 chr6 138973809 138973834 -10543203 + B3A SINE B2 148 172 -26 7 1645 207 162 0 0 chr6 138973977 138974014 -10543023 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 7 1645 225 94 0 0 chr6 138974850 138974882 -10542155 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1645 25 31 0 0 chr6 138975298 138975330 -10541707 + AT_rich Low_complexity Low_complexity 1 32 0 7 1645 207 0 0 0 chr6 138975450 138975473 -10541564 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1645 188 383 61 0 chr6 138976471 138976586 -10540451 + MIRb SINE MIR 95 216 -52 7 1645 360 308 104 8 chr6 138976936 138977070 -10539967 + B3A SINE B2 14 160 -38 7 1645 432 0 0 0 chr6 138977090 138977138 -10539899 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1645 423 56 0 0 chr6 138977141 138977195 -10539842 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1645 747 206 0 0 chr6 138977306 138977476 -10539561 + CT-rich Low_complexity Low_complexity 5 174 0 7 1645 32 43 0 0 chr6 138977506 138977552 -10539485 + AT_rich Low_complexity Low_complexity 1 46 0 7 1645 21 36 0 0 chr6 138977882 138977910 -10539127 + AT_rich Low_complexity Low_complexity 1 28 0 7 1645 482 281 16 68 chr6 138978969 138979160 -10537877 - B3A SINE B2 -16 182 2 7 1645 6143 198 48 8 chr6 138979479 138981079 -10535958 + Lx2B LINE L1 5354 6996 -4 7 1645 276 53 88 0 chr6 138981744 138981801 -10535236 + (TTTG)n Simple_repeat Simple_repeat 3 64 0 7 1645 552 30 0 0 chr6 138982829 138982895 -10534142 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 7 1645 2042 109 18 21 chr6 138983326 138983655 -10533382 + Lx LINE L1 6323 6650 -4 7 1645 266 0 29 0 chr6 138984055 138984089 -10532948 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1645 329 217 16 50 chr6 138984091 138984212 -10532825 - L1_Rod LINE L1 -20 5827 5711 7 1645 695 343 44 34 chr6 138984218 138984601 -10532436 + Lx9 LINE L1 6989 7375 -269 7 1645 201 138 0 0 chr6 138984686 138984715 -10532322 + (CATA)n Simple_repeat Simple_repeat 3 31 0 7 1645 279 0 0 0 chr6 138985205 138985236 -10531801 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1645 218 291 0 0 chr6 138985543 138985598 -10531439 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 7 1645 1099 85 0 0 chr6 138985897 138986038 -10530999 + B1_Mus1 SINE Alu 1 141 -7 7 1645 612 0 0 0 chr6 138986038 138986106 -10530931 + (GAA)n Simple_repeat Simple_repeat 1 68 0 7 1645 1282 56 6 11 chr6 138986106 138986161 -10530876 + (GGA)n Simple_repeat Simple_repeat 1 55 0 7 1645 1226 90 6 0 chr6 138986161 138986339 -10530698 + (GAA)n Simple_repeat Simple_repeat 1 179 0 7 1645 1282 56 6 11 chr6 138986339 138986464 -10530573 + (GGA)n Simple_repeat Simple_repeat 2 126 0 7 1645 2280 134 0 0 chr6 138986862 138987219 -10529818 - L1_Mur2 LINE L1 -730 5147 4791 7 1645 1136 187 84 4 chr6 138987226 138987452 -10529585 + Lx4A LINE L1 6815 7058 0 7 1645 261 57 0 0 chr6 138987452 138987487 -10529550 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1645 524 134 10 0 chr6 138987949 138988046 -10528991 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 7 1645 426 20 0 0 chr6 138988428 138988479 -10528558 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1645 35717 68 1 13 chr6 138988621 138994788 -10522249 - L1Md_F2 LINE L1 -12 6570 483 8 1645 191 388 19 0 chr6 138995042 138995145 -10521892 + L2 LINE L2 1188 1292 -2127 8 1645 246 192 0 0 chr6 138996711 138996763 -10520274 + (CAT)n Simple_repeat Simple_repeat 2 53 0 8 1645 310 264 14 0 chr6 138996772 138996844 -10520193 - B4 SINE B4 -208 84 12 8 1645 502 133 0 32 chr6 138996936 138997060 -10519977 + (TCTCTG)n Simple_repeat Simple_repeat 3 122 0 8 1645 326 365 138 39 chr6 138997125 138997945 -10519092 + L2 LINE L2 2178 3078 -341 8 1645 858 270 105 57 chr6 138998363 138998716 -10518321 + ORR1D2 LTR MaLR 1 370 0 8 1645 486 0 0 0 chr6 138999037 138999091 -10517946 + (TTTTA)n Simple_repeat Simple_repeat 3 56 0 8 1645 263 211 120 37 chr6 138999092 138999200 -10517837 - Lx5 LINE L1 -9 7041 6925 8 1645 540 291 28 79 chr6 138999444 138999660 -10517377 - B3 SINE B2 -7 209 5 8 1645 356 209 0 11 chr6 138999677 138999769 -10517268 + CT-rich Low_complexity Low_complexity 4 94 0 8 1645 1421 64 16 0 chr6 138999812 139000000 -10517037 + L1_Mus4 LINE L1 5770 5960 -676 8 1645 3792 122 99 3 chr6 139000000 139000627 -10516410 + Lx LINE L1 5964 6650 -4 1 1645 388 305 21 0 chr6 139000696 139000791 -10516246 - ID_B1 SINE B4 -58 166 70 2 1645 201 197 0 0 chr6 139001453 139001514 -10515523 + CT-rich Low_complexity Low_complexity 2 62 0 3 1645 500 288 14 21 chr6 139001539 139001681 -10515356 - RSINE1 SINE B4 0 165 25 4 1645 33 0 0 0 chr6 139002235 139002268 -10514769 + AT_rich Low_complexity Low_complexity 1 33 0 5 1645 32 0 0 0 chr6 139003301 139003333 -10513704 + AT_rich Low_complexity Low_complexity 1 32 0 6 1645 1241 27 0 0 chr6 139003489 139003635 -10513402 + B1_Mus2 SINE Alu 1 146 -1 7 1645 23 54 0 0 chr6 139003781 139003818 -10513219 + AT_rich Low_complexity Low_complexity 1 37 0 8 1645 276 253 33 33 chr6 139004270 139004360 -10512677 + RSINE1 SINE B4 4 93 -72 9 1645 21 0 0 0 chr6 139004434 139004455 -10512582 + AT_rich Low_complexity Low_complexity 1 21 0 1 1645 435 336 16 0 chr6 139004862 139004990 -10512047 + ID_B1 SINE B4 87 216 -8 1 1645 187 378 23 45 chr6 139005189 139005322 -10511715 - MIRb SINE MIR -103 165 36 1 1645 3842 159 25 0 chr6 139005732 139006385 -10510652 - L1_Mm LINE L1 0 5883 5215 1 1645 986 101 151 0 chr6 139007112 139007271 -10509766 + B2_Mm1t SINE B2 1 183 -10 1 1645 4016 144 3 8 chr6 139007569 139008219 -10508818 - Lx3B LINE L1 -3 6970 6324 1 1645 273 119 0 0 chr6 139008220 139008262 -10508775 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1645 910 322 60 10 chr6 139008482 139008868 -10508169 + Lx8 LINE L1 6818 7222 -251 1 1645 261 109 0 0 chr6 139009106 139009152 -10507885 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 1 1645 198 0 0 0 chr6 139009153 139009175 -10507862 + (GAAA)n Simple_repeat Simple_repeat 1 22 0 1 1645 313 342 59 46 chr6 139009175 139009328 -10507709 + HAL1-3A_ME LINE L1 2284 2438 -420 2 1645 606 269 140 15 chr6 139009726 139009990 -10507047 - MER2 DNA MER2_type -25 320 24 2 1645 1023 81 0 0 chr6 139010482 139010642 -10506395 + (GTTTG)n Simple_repeat Simple_repeat 5 164 0 2 1645 22 0 0 0 chr6 139013126 139013148 -10503889 + AT_rich Low_complexity Low_complexity 1 22 0 2 1645 30 107 0 0 chr6 139013404 139013525 -10503512 + AT_rich Low_complexity Low_complexity 1 121 0 2 1645 383 344 111 34 chr6 139013778 139014218 -10502819 - L1M5 LINE L1 -2430 3716 3243 2 1645 580 183 35 9 chr6 139014442 139014558 -10502479 - PB1D9 SINE Alu -1 119 1 2 1645 22 80 0 0 chr6 139014558 139014608 -10502429 + AT_rich Low_complexity Low_complexity 1 50 0 2 1645 22 56 0 0 chr6 139014864 139014900 -10502137 + AT_rich Low_complexity Low_complexity 1 36 0 2 1645 1041 134 0 0 chr6 139015316 139015488 -10501549 + (CA)n Simple_repeat Simple_repeat 1 172 0 2 1645 180 0 0 0 chr6 139015900 139015920 -10501117 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1645 5062 186 12 5 chr6 139016412 139016919 -10500118 + L1VL4 LINE L1 877 1383 -4503 3 1645 3642 91 8 11 chr6 139016919 139017444 -10499593 + L1_Mus3 LINE L1 6107 6629 -9 3 1645 528 59 0 0 chr6 139017447 139017515 -10499522 + (GAA)n Simple_repeat Simple_repeat 2 69 0 3 1645 5062 178 25 6 chr6 139017515 139018354 -10498683 + L1VL4 LINE L1 1384 2243 -3643 3 1645 226 47 22 44 chr6 139018365 139018410 -10498627 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 3 1645 5369 150 12 20 chr6 139018410 139019397 -10497640 + L1VL4 LINE L1 3469 4447 -1430 3 1645 1316 163 14 5 chr6 139019400 139019654 -10497383 + L1VL4 LINE L1 4781 5042 -1101 3 1645 720 239 84 28 chr6 139019652 139019867 -10497170 + Lx3C LINE L1 6748 6974 -2 3 1645 34 55 0 0 chr6 139021601 139021656 -10495381 + AT_rich Low_complexity Low_complexity 1 55 0 3 1645 617 243 15 7 chr6 139021847 139021984 -10495053 - B1_Mus1 SINE Alu -10 138 1 3 1645 5576 3 0 0 chr6 139022350 139022968 -10494069 - L1Md_A LINE L1 0 6582 5965 3 1645 242 255 85 68 chr6 139023638 139023756 -10493281 - RSINE1 SINE B4 -45 120 1 3 1645 1757 60 26 4 chr6 139026028 139026262 -10490775 - L1_Mus3 LINE L1 -229 6409 6171 4 1645 964 291 114 30 chr6 139026266 139026635 -10490402 + MTD LTR MaLR 18 417 -2 4 1645 761 314 145 64 chr6 139026635 139027166 -10489871 + MTD-int LTR MaLR 1 574 -684 4 1645 2307 274 14 7 chr6 139027217 139027788 -10489249 - Lx7 LINE L1 -929 6767 6193 4 1645 306 0 0 0 chr6 139027788 139027822 -10489215 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1645 2307 274 14 7 chr6 139027822 139027838 -10489199 - Lx7 LINE L1 -1504 6192 6177 4 1645 404 216 0 10 chr6 139027843 139027946 -10489091 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 1645 228 291 59 15 chr6 139027974 139028110 -10488927 - Lx7 LINE L1 -1571 6125 5984 4 1645 4735 209 60 69 chr6 139028150 139028306 -10488731 + Lx7 LINE L1 4542 4651 -1229 4 1645 1068 204 18 0 chr6 139028306 139028527 -10488510 - URR1B DNA MER1_type 0 225 1 4 1645 4735 209 60 69 chr6 139028527 139029643 -10487394 + Lx7 LINE L1 4652 5823 -57 4 1645 221 0 35 0 chr6 139029643 139029672 -10487365 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1645 4735 205 13 68 chr6 139029672 139029815 -10487222 + Lx7 LINE L1 5824 5947 -1749 4 1645 611 301 94 42 chr6 139030112 139030614 -10486423 + L1MD LINE L1 3767 4294 -1852 4 1645 383 375 38 38 chr6 139030887 139031070 -10485967 + B3A SINE B2 9 191 -7 4 1645 369 324 60 23 chr6 139031393 139031611 -10485426 - L1M2 LINE L1 -1514 4629 4404 5 1645 1661 107 62 7 chr6 139032961 139033234 -10483803 - Lx3B LINE L1 -631 5255 4968 5 1645 8011 147 26 8 chr6 139033234 139034431 -10482606 + Lx3B LINE L1 5259 6478 -495 5 1645 2766 108 5 0 chr6 139034431 139034829 -10482208 - MTB LTR MaLR 0 400 1 5 1645 8011 152 32 14 chr6 139034829 139035313 -10481724 + Lx3B LINE L1 6479 6973 0 5 1645 22 80 0 0 chr6 139035452 139035502 -10481535 + AT_rich Low_complexity Low_complexity 1 50 0 5 1645 246 325 67 21 chr6 139035755 139035917 -10481120 - MLT1A1 LTR MaLR -46 362 150 5 1645 20192 176 40 35 chr6 139036303 139036653 -10480384 + Lx3_Mus LINE L1 1495 1872 -4014 5 1645 3280 56 0 0 chr6 139036653 139037049 -10479988 + MTA_Mm LTR MaLR 1 396 0 5 1645 20192 176 40 35 chr6 139037049 139039976 -10477061 + Lx3_Mus LINE L1 1873 4736 -1150 5 1645 256 24 49 0 chr6 139039976 139040017 -10477020 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 5 1645 20192 176 40 35 chr6 139040017 139040248 -10476789 + Lx3_Mus LINE L1 4737 5037 -849 5 1645 2196 141 85 0 chr6 139040248 139040637 -10476400 + BGLII_Mus LTR ERVK 1 422 0 5 1645 20192 112 38 43 chr6 139040637 139042624 -10474413 + Lx3_Mus LINE L1 5038 7000 -9 5 1645 286 234 78 39 chr6 139042698 139042827 -10474210 + L1MB8 LINE L1 5845 5978 -200 5 1645 22 35 0 0 chr6 139043750 139043779 -10473258 + AT_rich Low_complexity Low_complexity 1 29 0 6 1645 892 70 0 0 chr6 139044518 139044632 -10472405 + B1_Mus1 SINE Alu 26 139 -9 6 1645 565 304 12 0 chr6 139044732 139044900 -10472137 + B4A SINE B4 39 208 -84 6 1645 333 0 0 0 chr6 139045016 139045053 -10471984 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1645 263 290 190 0 chr6 139045600 139045700 -10471337 + PB1D7 SINE Alu 1 119 -1 6 1645 527 180 29 50 chr6 139045700 139045840 -10471197 - Lx5 LINE L1 -1057 5993 5857 6 1645 1279 231 48 8 chr6 139045844 139046198 -10470839 + Lx5 LINE L1 5964 6331 -719 6 1645 1405 251 72 29 chr6 139046195 139046610 -10470427 + Lx6 LINE L1 6688 7120 -340 6 1645 803 183 0 6 chr6 139046634 139046815 -10470222 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1645 451 238 54 7 chr6 139046818 139046966 -10470071 + Lx6 LINE L1 7119 7256 -204 6 1645 1555 311 124 27 chr6 139047581 139048446 -10468591 - Lx8 LINE L1 -99 7374 6426 6 1645 635 175 0 9 chr6 139048556 139048671 -10468366 - B1_Mus2 SINE Alu -12 135 22 6 1645 204 97 0 0 chr6 139048835 139048866 -10468171 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 7 1645 225 0 0 0 chr6 139049168 139049193 -10467844 + (CAG)n Simple_repeat Simple_repeat 1 25 0 7 1645 1093 50 43 0 chr6 139049807 139049947 -10467090 + B1_Mus1 SINE Alu 2 147 -1 7 1645 303 149 0 0 chr6 139050054 139050128 -10466909 + (T)n Simple_repeat Simple_repeat 1 74 0 7 1645 1087 83 0 0 chr6 139051233 139051378 -10465659 + B1_Mus1 SINE Alu 2 146 -2 7 1645 224 59 29 0 chr6 139051378 139051412 -10465625 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1645 432 327 43 56 chr6 139051461 139051623 -10465414 + RSINE1 SINE B4 6 165 0 7 1645 21 36 0 0 chr6 139051645 139051673 -10465364 + AT_rich Low_complexity Low_complexity 1 28 0 7 1645 1226 301 49 17 chr6 139051979 139052385 -10464652 + MTD LTR MaLR 1 419 0 7 1645 328 243 50 42 chr6 139052885 139052994 -10464043 - B1F SINE Alu -2 147 19 7 1645 2843 192 31 16 chr6 139053389 139053944 -10463093 - RLTR20B3 LTR ERVK -2 575 13 8 1645 958 186 6 82 chr6 139054017 139054285 -10462752 - L1_Mur1 LINE L1 -148 5735 5516 8 1645 225 271 101 30 chr6 139054285 139054384 -10462653 + RLTR44E LTR ERVK 81 186 -266 8 1645 839 148 7 0 chr6 139054384 139054526 -10462511 - L1_Mur1 LINE L1 -468 5409 5267 8 1645 25 31 0 0 chr6 139055255 139055287 -10461750 + AT_rich Low_complexity Low_complexity 1 32 0 8 1645 711 318 117 3 chr6 139055428 139055728 -10461309 - MER57C2 LTR ERV1 -3 431 98 8 1645 270 0 0 0 chr6 139057182 139057212 -10459825 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1645 3329 186 41 6 chr6 139057702 139058363 -10458674 - L1_Mm LINE L1 -391 5492 4809 8 1645 266 0 0 29 chr6 139059014 139059049 -10457988 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1645 192 97 0 0 chr6 139059233 139059264 -10457773 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 1645 216 0 0 0 chr6 139059322 139059346 -10457691 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1645 220 102 20 39 chr6 139060710 139060761 -10456276 + (TTAA)n Simple_repeat Simple_repeat 2 51 0 9 1645 4766 113 1 24 chr6 139060786 139061523 -10455514 + Lx LINE L1 5935 6654 0 9 1645 315 191 0 0 chr6 139061563 139061631 -10455406 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 1645 22 35 0 0 chr6 139061910 139061939 -10455098 + AT_rich Low_complexity Low_complexity 1 29 0 9 1645 220 222 19 0 chr6 139062343 139062451 -10454586 + (TA)n Simple_repeat Simple_repeat 2 111 0 9 1645 458 285 56 52 chr6 139062508 139062775 -10454262 - L1M3 LINE L1 -704 5608 5341 9 1645 261 258 20 40 chr6 139063122 139063223 -10453814 - L1M3 LINE L1 -1175 4965 4867 9 1645 357 93 0 0 chr6 139063766 139063820 -10453217 + (TG)n Simple_repeat Simple_repeat 2 55 0 9 1645 529 255 48 34 chr6 139063836 139063999 -10453038 - B3 SINE B2 -26 169 6 9 1645 3862 78 0 24 chr6 139064600 139065141 -10451896 - L1Md_F2 LINE L1 -3 6579 6052 9 1646 217 174 0 21 chr6 139067652 139067699 -10449338 + A-rich Low_complexity Low_complexity 2 47 0 9 1646 370 294 74 19 chr6 139067912 139068127 -10448910 + L1MD2 LINE L1 5679 5905 -454 1 1646 387 337 83 15 chr6 139068167 139068372 -10448665 - ID_B1 SINE B4 -2 222 4 1 1646 404 82 16 0 chr6 139068457 139068518 -10448519 - L1Md_F2 LINE L1 -633 5951 5890 1 1646 4611 74 11 3 chr6 139068518 139069131 -10447906 + L1Md_F2 LINE L1 5964 6581 -1 1 1646 388 82 0 141 chr6 139069131 139069154 -10447883 - L1_Mus1 LINE L1 -678 5889 5872 1 1646 225 280 25 51 chr6 139069636 139069715 -10447322 - ID_B1 SINE B4 -38 186 110 1 1646 245 296 0 0 chr6 139069702 139069756 -10447281 - ID4_ SINE ID -6 77 24 1 1646 308 314 60 60 chr6 139071433 139071616 -10445421 - L1MD LINE L1 -811 5335 5153 1 1646 408 20 0 0 chr6 139073532 139073581 -10443456 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1646 3697 177 78 41 chr6 139073769 139074598 -10442439 + RLTR25B LTR ERVK 3 862 -166 1 1646 232 154 0 0 chr6 139074591 139074630 -10442407 + U7 snRNA snRNA 8 46 -17 1 1646 346 167 31 10 chr6 139074820 139074917 -10442120 + GA-rich Low_complexity Low_complexity 3 101 0 1 1646 815 324 153 4 chr6 139074993 139075477 -10441560 - Lx8 LINE L1 -337 7136 6581 1 1646 5103 117 58 11 chr6 139075892 139076695 -10440342 + Lx LINE L1 5812 6652 -2 1 1646 1601 250 86 27 chr6 139077270 139077749 -10439288 + RMER19C LTR ERVK 142 609 -2 1 1646 441 303 45 86 chr6 139078078 139078345 -10438692 + MLT1D LTR MaLR 241 496 -9 1 1646 1166 253 99 12 chr6 139078600 139078944 -10438093 - ORR1D1 LTR MaLR 0 374 1 1 1646 306 106 0 0 chr6 139079112 139079159 -10437878 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1646 29 47 0 0 chr6 139079286 139079329 -10437708 + AT_rich Low_complexity Low_complexity 1 43 0 1 1646 324 88 75 0 chr6 139079401 139079481 -10437556 + (TCTG)n Simple_repeat Simple_repeat 2 87 0 1 1646 45 0 0 0 chr6 139079860 139079905 -10437132 + AT_rich Low_complexity Low_complexity 1 45 0 1 1646 22 35 0 0 chr6 139080302 139080331 -10436706 + AT_rich Low_complexity Low_complexity 1 29 0 1 1646 312 27 0 0 chr6 139080779 139080816 -10436221 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1646 423 325 96 9 chr6 139080860 139081090 -10435947 - B4A SINE B4 -41 251 2 1 1646 584 346 43 29 chr6 139083487 139083767 -10433270 - B4A SINE B4 -8 284 1 1 1646 35 0 0 0 chr6 139084094 139084129 -10432908 + AT_rich Low_complexity Low_complexity 1 35 0 1 1646 1403 183 116 42 chr6 139084137 139084246 -10432791 - Lx2B LINE L1 -7 6993 6871 1 1646 768 52 0 0 chr6 139084246 139084343 -10432694 + (CA)n Simple_repeat Simple_repeat 1 97 0 1 1646 1403 183 116 42 chr6 139084343 139084587 -10432450 - Lx2B LINE L1 -130 6870 6614 1 1646 21 0 0 0 chr6 139084588 139084609 -10432428 + AT_rich Low_complexity Low_complexity 1 21 0 1 1646 606 100 0 0 chr6 139084653 139084753 -10432284 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 1 1646 24 0 0 0 chr6 139084755 139084779 -10432258 + AT_rich Low_complexity Low_complexity 1 24 0 1 1646 803 256 18 46 chr6 139084783 139085000 -10432037 - B3 SINE B2 0 216 6 1 1646 181 278 0 132 chr6 139085186 139085269 -10431768 - L3 LINE CR1 -1475 3014 2943 1 1646 2744 12 95 6 chr6 139085441 139085778 -10431259 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1646 28478 21 9 1 chr6 139085778 139089025 -10428012 - IAPEz-int LTR ERVK 0 6481 3210 1 1646 7474 88 107 22 chr6 139089024 139090228 -10426809 - IAPEz-int LTR ERVK -5168 1313 8 1 1646 2744 12 95 6 chr6 139090228 139090565 -10426472 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1646 22 0 0 0 chr6 139091028 139091050 -10425987 + AT_rich Low_complexity Low_complexity 1 22 0 1 1646 22 103 0 0 chr6 139091243 139091321 -10425716 + AT_rich Low_complexity Low_complexity 1 78 0 1 1646 186 311 16 16 chr6 139093017 139093079 -10423958 + MIR SINE MIR 37 98 -110 1 1646 2016 173 74 38 chr6 139093984 139094718 -10422319 - L1VL4 LINE L1 -2379 1533 800 1 1646 243 356 68 18 chr6 139094740 139094903 -10422134 + MER70B LTR ERVL 207 377 -201 1 1646 2815 207 144 42 chr6 139095784 139096514 -10420523 - Lx4B LINE L1 -6 7052 6249 1 1646 273 304 98 0 chr6 139096670 139096762 -10420275 - RMER15 LTR ERVL -105 470 370 1 1646 1073 322 87 19 chr6 139096773 139097289 -10419748 - Lx8 LINE L1 -244 7229 6679 1 1646 21 0 0 0 chr6 139097293 139097314 -10419723 + AT_rich Low_complexity Low_complexity 1 21 0 1 1646 248 355 56 61 chr6 139097779 139098010 -10419027 - L2 LINE L2 -428 2991 2762 1 1646 27 29 0 0 chr6 139098633 139098667 -10418370 + AT_rich Low_complexity Low_complexity 1 34 0 1 1646 457 229 28 182 chr6 139098757 139098933 -10418104 + B1_Mur1 SINE Alu 1 149 0 1 1646 788 301 50 18 chr6 139099974 139100373 -10416664 + L1MA4 LINE L1 5506 5917 -383 1 1646 904 210 58 21 chr6 139100819 139101079 -10415958 + L1_Mur3 LINE L1 5168 5404 -476 1 1646 8873 68 12 1 chr6 139101112 139102964 -10414073 - L1Md_F2 LINE L1 -1 6581 4706 1 1646 26 30 0 0 chr6 139102983 139103016 -10414021 + AT_rich Low_complexity Low_complexity 1 33 0 1 1646 335 133 13 0 chr6 139103016 139103091 -10413946 - Lx4A LINE L1 -3 7055 6980 1 1646 820 129 7 36 chr6 139103091 139103228 -10413809 + L1_Mur1 LINE L1 5424 5556 -330 1 1646 528 91 0 0 chr6 139103258 139103346 -10413691 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1646 229 164 0 52 chr6 139103346 139103404 -10413633 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1646 252 341 75 6 chr6 139103591 139103765 -10413272 - L1MD3 LINE L1 -528 7467 7282 1 1646 1003 220 39 33 chr6 139103962 139104267 -10412770 - L1_Rod LINE L1 -2303 3544 3238 1 1646 2414 142 106 7 chr6 139104300 139104734 -10412303 - Lx3B LINE L1 -5 6968 6492 1 1646 362 295 31 10 chr6 139104734 139104830 -10412207 - RSINE1 SINE B4 -66 99 2 1 1646 228 246 29 14 chr6 139105175 139105245 -10411792 + CT-rich Low_complexity Low_complexity 2 72 0 1 1646 240 59 39 19 chr6 139105706 139105758 -10411279 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 1 1646 431 330 103 11 chr6 139106412 139106596 -10410441 + MER82 DNA MER2_type 54 254 -399 1 1646 1214 248 117 7 chr6 139107083 139107510 -10409527 + Lx7 LINE L1 5995 6468 -1228 1 1646 1057 284 83 45 chr6 139108148 139108654 -10408383 - Lx8 LINE L1 -6 7467 6943 1 1646 422 101 14 0 chr6 139109398 139109467 -10407570 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1646 1911 264 25 0 chr6 139110042 139110530 -10406507 - L1_Mur3 LINE L1 -6819 893 394 1 1646 933 89 0 15 chr6 139110530 139110649 -10406388 - L1_Mus3 LINE L1 -431 6207 6091 1 1646 627 80 0 42 chr6 139110649 139110767 -10406270 + L1_Mus4 LINE L1 6524 6636 0 1 1646 1285 265 62 37 chr6 139110767 139111209 -10405828 - L1_Mus3 LINE L1 -7114 614 159 1 1646 342 138 0 0 chr6 139111856 139111914 -10405123 + (TTA)n Simple_repeat Simple_repeat 1 58 0 1 1646 21 0 0 0 chr6 139113711 139113732 -10403305 + AT_rich Low_complexity Low_complexity 1 21 0 1 1646 341 275 161 14 chr6 139113843 139114067 -10402970 + MTE2b LTR MaLR 25 277 -102 1 1646 291 160 0 0 chr6 139114378 139114453 -10402584 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1646 41 0 0 0 chr6 139114496 139114537 -10402500 + AT_rich Low_complexity Low_complexity 1 41 0 1 1646 930 237 28 24 chr6 139115073 139115324 -10401713 - ORR1C1 LTR MaLR 0 378 127 1 1646 672 250 116 6 chr6 139115747 139115920 -10401117 + B3A SINE B2 1 192 -6 1 1646 276 374 9 9 chr6 139116094 139116202 -10400835 + PB1D10 SINE Alu 3 110 -7 1 1646 418 348 17 64 chr6 139116212 139116384 -10400653 + RSINE1 SINE B4 2 165 0 1 1646 2236 196 69 12 chr6 139116490 139116991 -10400046 - RLTR11A LTR ERVK 0 528 1 1 1646 302 204 45 11 chr6 139117461 139117550 -10399487 + (TA)n Simple_repeat Simple_repeat 2 93 0 1 1646 363 44 0 0 chr6 139117685 139117730 -10399307 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1646 459 208 0 0 chr6 139118235 139118355 -10398682 + GA-rich Low_complexity Low_complexity 1 120 0 1 1646 22 56 0 0 chr6 139118583 139118619 -10398418 + AT_rich Low_complexity Low_complexity 1 36 0 1 1646 323 182 0 13 chr6 139119150 139119228 -10397809 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1646 29 60 0 0 chr6 139119237 139119287 -10397750 + AT_rich Low_complexity Low_complexity 1 50 0 1 1646 351 0 0 0 chr6 139119800 139119839 -10397198 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1646 338 42 0 20 chr6 139119951 139120000 -10397037 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 1 1646 522 250 50 56 chr6 139120478 139120747 -10396290 + ORR1C1 LTR MaLR 1 234 -160 1 1646 248 339 53 6 chr6 139120797 139120966 -10396071 - L1M3 LINE L1 -2228 3912 3736 1 1646 7310 71 5 4 chr6 139120975 139121926 -10395111 - L1_Mus1 LINE L1 0 6567 5616 1 1646 372 43 0 0 chr6 139121948 139121994 -10395043 + (TCCCC)n Simple_repeat Simple_repeat 1 46 0 1 1646 1131 72 0 37 chr6 139121994 139122181 -10394856 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1646 266 241 7 29 chr6 139122187 139122324 -10394713 + CT-rich Low_complexity Low_complexity 1 134 0 1 1646 212 122 39 39 chr6 139123377 139123428 -10393609 + (TCTCTG)n Simple_repeat Simple_repeat 1 51 0 1 1646 309 329 41 136 chr6 139123434 139123603 -10393434 - RSINE1 SINE B4 0 165 13 1 1646 327 130 0 0 chr6 139124077 139124131 -10392906 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1646 315 0 0 0 chr6 139124234 139124269 -10392768 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1646 280 331 71 6 chr6 139124537 139124707 -10392330 + ORR1E LTR MaLR 4 184 -175 1 1646 5825 211 34 14 chr6 139124825 139126148 -10390889 - Lx2B LINE L1 0 7000 5651 1 1646 22 56 0 0 chr6 139126690 139126726 -10390311 + AT_rich Low_complexity Low_complexity 1 36 0 1 1646 184 226 55 36 chr6 139127232 139127287 -10389750 + MIR SINE MIR 97 152 -110 1 1646 307 297 115 7 chr6 139127599 139127738 -10389299 - RSINE1 SINE B4 -6 159 6 1 1646 652 283 98 87 chr6 139127933 139128656 -10388381 + L1M2 LINE L1 4186 4916 -1227 1 1646 383 347 12 6 chr6 139128682 139128853 -10388184 + ID_B1 SINE B4 49 220 -4 2 1646 301 303 96 14 chr6 139128868 139129054 -10387983 + L1MA8 LINE L1 6088 6287 -4 2 1646 180 0 0 0 chr6 139130784 139130804 -10386233 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 1646 315 272 109 42 chr6 139131975 139132094 -10384943 + ORR1D2 LTR MaLR 11 137 -233 2 1646 1215 184 5 9 chr6 139132250 139132464 -10384573 + URR1B DNA MER1_type 13 225 0 2 1646 389 322 130 4 chr6 139132559 139132790 -10384247 - Lx9 LINE L1 -327 7317 7058 2 1646 2001 134 20 23 chr6 139132855 139133207 -10383830 + Lx2 LINE L1 6643 6993 -4 2 1646 471 82 0 0 chr6 139133315 139133388 -10383649 + (T)n Simple_repeat Simple_repeat 1 73 0 2 1646 597 270 44 39 chr6 139133756 139133937 -10383100 - B3A SINE B2 -16 182 1 2 1646 212 133 32 32 chr6 139135505 139135567 -10381470 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1646 184 408 16 24 chr6 139135711 139135834 -10381203 + L3 LINE CR1 4242 4363 -126 2 1646 495 0 0 0 chr6 139136128 139136183 -10380854 + (TTA)n Simple_repeat Simple_repeat 3 57 0 2 1646 1176 57 0 0 chr6 139136186 139136327 -10380710 - B1_Mus2 SINE Alu -6 141 1 2 1646 255 200 16 16 chr6 139136615 139136676 -10380361 + B3 SINE B2 154 214 -2 2 1646 521 58 78 0 chr6 139137673 139137776 -10379261 + (TCTCTG)n Simple_repeat Simple_repeat 2 112 0 2 1646 504 0 0 0 chr6 139137779 139137835 -10379202 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1646 6525 197 26 11 chr6 139138643 139140229 -10376808 - Lx5 LINE L1 -2 7048 5440 2 1646 784 293 49 100 chr6 139140231 139140641 -10376396 - L1_Mur2 LINE L1 -6122 590 202 2 1646 231 370 26 46 chr6 139141353 139141506 -10375531 + MLT1F LTR MaLR 70 219 -329 2 1646 459 0 0 0 chr6 139142139 139142190 -10374847 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1646 203 211 0 19 chr6 139142193 139142246 -10374791 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1646 574 336 18 23 chr6 139142399 139142618 -10374419 + ID_B1 SINE B4 6 223 -1 2 1646 23 0 0 0 chr6 139144394 139144417 -10372620 + AT_rich Low_complexity Low_complexity 1 23 0 2 1646 1477 240 61 44 chr6 139144711 139145186 -10371851 + Lx7 LINE L1 6923 7405 -291 2 1646 354 161 21 11 chr6 139145358 139145452 -10371585 + (TA)n Simple_repeat Simple_repeat 1 95 0 2 1646 231 119 153 12 chr6 139145476 139145561 -10371476 - Lx9 LINE L1 -127 7517 7421 2 1646 4717 141 15 25 chr6 139145581 139146389 -10370648 - Lx2B LINE L1 -3 6997 6198 2 1646 1074 132 16 0 chr6 139146439 139146621 -10370416 + L1_Mus4 LINE L1 6452 6636 0 2 1646 746 277 22 0 chr6 139146625 139146809 -10370228 + B3 SINE B2 29 216 0 2 1646 186 43 0 0 chr6 139147768 139147791 -10369246 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1646 1451 54 0 0 chr6 139148283 139148467 -10368570 - L1Md_T LINE L1 0 6582 6399 2 1646 283 398 28 0 chr6 139148521 139148629 -10368408 + MER45R DNA Tip100 2 112 -1469 2 1646 778 129 0 43 chr6 139149505 139149667 -10367370 - RMER17B LTR ERVK -495 463 309 2 1646 566 280 70 37 chr6 139149928 139150169 -10366868 + RLTR16 LTR ERVK 23 271 -234 2 1646 441 275 52 35 chr6 139150756 139151042 -10365995 - L1MB8 LINE L1 -237 5941 5651 2 1646 2330 136 28 18 chr6 139151090 139151486 -10365551 - Lx LINE L1 -5 6649 6250 2 1646 240 263 122 57 chr6 139151887 139152133 -10364904 - L1MB8 LINE L1 -842 5304 5043 2 1646 1507 264 45 7 chr6 139152229 139152633 -10364404 - MTD LTR MaLR 0 419 1 2 1646 1950 256 50 57 chr6 139152738 139153334 -10363703 + RLTR18 LTR ERVK 24 615 -1 2 1646 414 314 68 36 chr6 139153669 139154070 -10362967 + L1M4 LINE L1 3530 3953 -2193 2 1646 709 289 78 22 chr6 139154106 139154463 -10362574 - MTEa LTR MaLR -2 377 1 2 1646 806 304 39 0 chr6 139154564 139154771 -10362266 - B3 SINE B2 0 216 2 2 1646 2560 341 82 52 chr6 139154785 139155443 -10361594 - MTE-int LTR MaLR -119 1461 758 2 1646 387 0 0 0 chr6 139155443 139155486 -10361551 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 2 1646 2560 341 82 52 chr6 139155486 139156245 -10360792 - MTE-int LTR MaLR -823 757 1 2 1646 301 277 12 12 chr6 139156424 139156508 -10360529 - MTE2a LTR MaLR -239 140 57 2 1646 195 157 0 0 chr6 139157337 139157388 -10359649 + CT-rich Low_complexity Low_complexity 66 116 0 2 1646 243 0 0 0 chr6 139157459 139157486 -10359551 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1646 1361 78 0 5 chr6 139157506 139157698 -10359339 - L1Md_F2 LINE L1 -12 6570 6380 2 1646 2048 67 0 7 chr6 139157698 139157969 -10359068 + L1_Mm LINE L1 4784 5052 -831 2 1646 437 358 104 15 chr6 139157961 139158355 -10358682 - L1M4b LINE L1 -6248 1086 658 2 1646 22 35 0 0 chr6 139158529 139158558 -10358479 + AT_rich Low_complexity Low_complexity 1 29 0 2 1646 476 177 11 49 chr6 139159181 139159365 -10357672 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 2 1646 225 0 0 0 chr6 139159731 139159756 -10357281 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1646 695 112 8 0 chr6 139160725 139160859 -10356178 + (TC)n Simple_repeat Simple_repeat 2 136 0 2 1646 341 327 12 12 chr6 139160911 139161081 -10355956 + Lx7 LINE L1 7181 7350 -346 2 1646 24 77 0 0 chr6 139161473 139161525 -10355512 + AT_rich Low_complexity Low_complexity 1 52 0 2 1646 25 31 0 0 chr6 139163505 139163537 -10353500 + AT_rich Low_complexity Low_complexity 1 32 0 2 1646 397 335 69 40 chr6 139164395 139164672 -10352365 + B4A SINE B4 4 288 -4 2 1646 578 291 28 23 chr6 139165087 139165263 -10351774 + ORR1E LTR MaLR 6 182 -177 2 1646 230 222 16 69 chr6 139165258 139165347 -10351690 + ORR1E LTR MaLR 306 419 0 2 1646 276 273 15 0 chr6 139165603 139165669 -10351368 + B4A SINE B4 220 286 -6 2 1646 232 323 11 0 chr6 139165671 139165764 -10351273 + (TA)n Simple_repeat Simple_repeat 2 95 0 2 1646 284 373 43 0 chr6 139165822 139165951 -10351086 - B1F1 SINE Alu -6 143 10 2 1646 10816 61 0 1 chr6 139165999 139167368 -10349669 + L1Md_F2 LINE L1 4218 5585 -298 2 1646 8137 43 1 1 chr6 139167369 139168354 -10348683 + L1Md_F2 LINE L1 5587 6571 -11 2 1646 367 283 44 40 chr6 139169084 139169276 -10347761 + MIRb SINE MIR 29 226 -42 2 1646 495 48 0 0 chr6 139169351 139169413 -10347624 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1646 463 294 20 65 chr6 139169414 139169567 -10347470 - RSINE1 SINE B4 -13 152 7 2 1646 604 297 187 16 chr6 139169628 139169933 -10347104 - ORR1E LTR MaLR 0 359 3 2 1646 8732 16 0 0 chr6 139170003 139171570 -10345467 - L1Md_A LINE L1 0 6582 5016 2 1646 237 313 17 9 chr6 139171815 139171931 -10345106 + (TATATG)n Simple_repeat Simple_repeat 3 119 0 2 1646 450 200 0 0 chr6 139172291 139172311 -10344726 + polypyrimidine Low_complexity Low_complexity 83 102 0 2 1646 1076 128 6 0 chr6 139172311 139172490 -10344547 + (TCC)n Simple_repeat Simple_repeat 1 180 0 2 1646 450 200 0 0 chr6 139172490 139172569 -10344468 + CT-rich Low_complexity Low_complexity 4 82 0 2 1646 553 360 40 50 chr6 139172858 139173180 -10343857 + MT2A LTR ERVL 144 462 -71 2 1646 1121 258 88 31 chr6 139174469 139174857 -10342180 + Lx8 LINE L1 6725 7134 -339 2 1646 2757 214 38 89 chr6 139174959 139176157 -10340880 + L1_Mur3 LINE L1 1420 2454 -3426 2 1646 566 312 38 23 chr6 139176301 139176563 -10340474 - Lx9 LINE L1 -306 7338 7073 2 1646 1070 213 119 27 chr6 139177905 139178199 -10338838 + MTD LTR MaLR 46 366 -53 2 1646 1119 292 107 44 chr6 139178701 139179568 -10337469 - L1MA7 LINE L1 -10 6281 5360 2 1646 315 65 0 0 chr6 139179595 139179641 -10337396 + (T)n Simple_repeat Simple_repeat 1 46 0 2 1646 432 288 30 0 chr6 139180054 139180186 -10336851 - B1_Mur2 SINE Alu -12 137 2 2 1646 469 307 121 84 chr6 139180244 139180600 -10336437 + L1M2 LINE L1 4447 4815 -1328 2 1646 3925 203 13 24 chr6 139180843 139181647 -10335390 - RMER1A Other Other -18 1012 269 2 1646 191 113 65 0 chr6 139182362 139182424 -10334613 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1646 284 227 8 32 chr6 139182518 139182742 -10334295 + (TA)n Simple_repeat Simple_repeat 1 218 0 2 1646 915 208 65 9 chr6 139182765 139182979 -10334058 - URR1A DNA MER1_type 0 226 1 2 1646 300 197 83 0 chr6 139184286 139184418 -10332619 + (TAGA)n Simple_repeat Simple_repeat 2 144 0 2 1646 715 114 29 0 chr6 139184517 139184692 -10332345 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1646 336 309 59 52 chr6 139185542 139185832 -10331205 - B4A SINE B4 0 292 1 2 1646 574 339 16 12 chr6 139186177 139186497 -10330540 - L1M2 LINE L1 -1090 5053 4733 2 1646 27 29 0 0 chr6 139186653 139186687 -10330350 + AT_rich Low_complexity Low_complexity 1 34 0 2 1646 288 0 0 0 chr6 139186726 139186758 -10330279 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1646 224 370 67 18 chr6 139188798 139189021 -10328016 + L2 LINE L2 2367 2600 -819 2 1646 544 265 37 11 chr6 139190937 139191124 -10325913 - L1MA9 LINE L1 -437 5875 5684 2 1646 390 286 44 25 chr6 139191189 139191393 -10325644 - L1MA9 LINE L1 -838 5474 5267 2 1646 774 32 0 0 chr6 139191397 139191490 -10325547 + (TA)n Simple_repeat Simple_repeat 1 93 0 2 1646 628 300 27 41 chr6 139191513 139191805 -10325232 - L1MA9 LINE L1 -944 5199 4912 2 1646 1865 185 72 18 chr6 139192160 139192546 -10324491 - MTB_Mm LTR MaLR 0 407 1 2 1646 2414 179 145 66 chr6 139192798 139193596 -10323441 + RMER6C LTR ERVK 1 720 0 2 1646 677 275 23 23 chr6 139194378 139194594 -10322443 + B3 SINE B2 1 216 0 2 1646 314 23 23 0 chr6 139194974 139195017 -10322020 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1646 666 272 81 104 chr6 139195746 139196131 -10320906 + MTE2a LTR MaLR 4 379 0 2 1646 198 91 0 0 chr6 139196279 139196312 -10320725 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1646 22 35 0 0 chr6 139196865 139196894 -10320143 + AT_rich Low_complexity Low_complexity 1 29 0 2 1647 715 150 8 8 chr6 139198986 139199107 -10317930 - RMER10B LTR ERVL -277 121 1 3 1647 238 349 9 9 chr6 139199265 139199372 -10317665 + GA-rich Low_complexity Low_complexity 4 110 0 3 1647 474 302 41 44 chr6 139199372 139199588 -10317449 + ORR1E LTR MaLR 167 379 0 3 1647 402 39 0 0 chr6 139199880 139199932 -10317105 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 1647 580 52 0 0 chr6 139199949 139200026 -10317011 - B1_Mm SINE Alu 0 147 71 3 1647 313 198 48 77 chr6 139200026 139200051 -10316986 - ID_B1 SINE B4 0 222 124 3 1647 29 28 0 0 chr6 139201302 139201338 -10315699 + AT_rich Low_complexity Low_complexity 1 36 0 3 1647 378 282 107 53 chr6 139201656 139201806 -10315231 - B3A SINE B2 -2 214 57 3 1647 1257 263 65 53 chr6 139201822 139202236 -10314801 + MTD LTR MaLR 1 419 0 3 1647 246 135 0 0 chr6 139202238 139202275 -10314762 - B3A SINE B2 -158 40 4 3 1647 606 204 184 0 chr6 139202709 139202861 -10314176 - B3A SINE B2 -17 181 2 3 1647 27 0 0 0 chr6 139203814 139203841 -10313196 + AT_rich Low_complexity Low_complexity 1 27 0 3 1647 266 250 10 0 chr6 139203892 139203996 -10313041 + GA-rich Low_complexity Low_complexity 2 106 0 3 1647 1224 54 15 10 chr6 139204609 139204824 -10312213 + (TCTA)n Simple_repeat Simple_repeat 1 216 0 3 1647 342 261 0 0 chr6 139205392 139205461 -10311576 + B4 SINE B4 5 73 -219 3 1647 252 193 0 0 chr6 139205461 139205493 -10311544 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1647 225 0 0 0 chr6 139205493 139205518 -10311519 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1647 252 193 0 0 chr6 139205518 139205542 -10311495 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1647 507 73 0 0 chr6 139205551 139205619 -10311418 + (CATA)n Simple_repeat Simple_repeat 4 71 0 3 1647 324 0 0 0 chr6 139206825 139206861 -10310176 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1647 330 360 29 115 chr6 139207256 139207535 -10309502 - B4A SINE B4 -3 289 35 3 1647 21 0 0 0 chr6 139207808 139207829 -10309208 + AT_rich Low_complexity Low_complexity 1 21 0 3 1647 534 256 109 70 chr6 139208003 139208259 -10308778 + RMER13A LTR ERVK 14 279 -581 3 1647 1527 104 0 31 chr6 139208274 139208502 -10308535 - Lx LINE L1 -452 6202 5982 3 1647 4160 119 6 3 chr6 139208489 139209307 -10307730 + Lx LINE L1 5169 5987 -667 3 1647 28 29 0 0 chr6 139210403 139210438 -10306599 + AT_rich Low_complexity Low_complexity 1 35 0 3 1647 720 0 0 0 chr6 139211370 139211450 -10305587 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 3 1647 515 164 10 0 chr6 139212993 139213097 -10303940 + (TA)n Simple_repeat Simple_repeat 1 105 0 3 1647 246 116 0 0 chr6 139213595 139213638 -10303399 + (ATG)n Simple_repeat Simple_repeat 3 45 0 3 1647 512 285 121 19 chr6 139213936 139214201 -10302836 + L1MA5 LINE L1 5633 5924 -376 3 1647 313 294 59 0 chr6 139215087 139215189 -10301848 - MER2 DNA MER2_type -136 209 102 3 1647 24 0 0 0 chr6 139216461 139216485 -10300552 + AT_rich Low_complexity Low_complexity 1 24 0 3 1647 816 250 5 19 chr6 139216490 139216702 -10300335 - B3 SINE B2 -7 209 1 3 1647 1308 73 0 0 chr6 139216886 139217063 -10299974 + (TTC)n Simple_repeat Simple_repeat 2 178 0 3 1647 291 54 0 0 chr6 139217067 139217104 -10299933 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 3 1647 974 111 45 19 chr6 139217104 139217260 -10299777 - B2_Mm2 SINE B2 -34 161 2 3 1647 3014 93 70 57 chr6 139217341 139217853 -10299184 - MURVY-LTR LTR ERV1 0 519 1 3 1647 533 320 62 39 chr6 139217978 139218215 -10298822 + B4A SINE B4 3 243 -49 3 1647 205 336 180 27 chr6 139219231 139219381 -10297656 - MIRm SINE MIR -69 207 35 3 1647 273 29 0 0 chr6 139219887 139219921 -10297116 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 3 1647 207 0 0 0 chr6 139219923 139219946 -10297091 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1647 431 341 143 55 chr6 139220043 139220110 -10296927 + ORR1E LTR MaLR 1 65 -294 3 1647 1780 167 5 51 chr6 139220110 139220540 -10296497 + RMER17C LTR ERVK 1 410 0 3 1647 431 330 94 37 chr6 139220540 139220790 -10296247 + ORR1E LTR MaLR 66 370 -9 3 1647 452 248 55 16 chr6 139220863 139220990 -10296047 + MER20 DNA MER1_type 25 156 -63 3 1647 1581 211 25 3 chr6 139221284 139221650 -10295387 + ORR1D1 LTR MaLR 1 374 0 3 1647 199 98 19 38 chr6 139221650 139221703 -10295334 + A-rich Low_complexity Low_complexity 3 54 0 3 1647 966 67 0 0 chr6 139221943 139222078 -10294959 + (TG)n Simple_repeat Simple_repeat 2 136 0 3 1647 465 191 31 21 chr6 139223210 139223306 -10293731 + RLTR23 LTR ERV1 334 430 0 3 1647 271 290 13 18 chr6 139223329 139223431 -10293606 + PB1D10 SINE Alu 11 113 -7 3 1647 415 332 46 54 chr6 139224138 139224418 -10292619 - L2b LINE L2 -178 3197 2920 3 1647 21 0 0 0 chr6 139226889 139226910 -10290127 + AT_rich Low_complexity Low_complexity 1 21 0 3 1647 227 309 16 31 chr6 139228660 139228787 -10288250 + (CA)n Simple_repeat Simple_repeat 2 126 0 3 1647 266 271 23 23 chr6 139229349 139229436 -10287601 + (TCCA)n Simple_repeat Simple_repeat 3 89 0 3 1647 200 316 20 31 chr6 139229544 139229642 -10287395 - L2 LINE L2 -353 3066 2970 3 1647 297 0 0 0 chr6 139230991 139231024 -10286013 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1647 717 308 5 0 chr6 139231445 139231653 -10285384 + ID_B1 SINE B4 3 211 -13 3 1647 180 299 152 80 chr6 139233993 139234131 -10282906 - L3b LINE CR1 -88 394 247 3 1647 1163 282 85 21 chr6 139234356 139234392 -10282645 - MTD LTR MaLR 0 419 373 3 1647 537 55 0 0 chr6 139234392 139234465 -10282572 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 1647 1163 282 85 21 chr6 139234465 139234805 -10282232 - MTD LTR MaLR -47 372 20 3 1647 216 171 0 0 chr6 139234806 139234841 -10282196 + A-rich Low_complexity Low_complexity 4 38 0 3 1647 714 154 192 0 chr6 139234882 139235038 -10281999 - Lx5 LINE L1 -1262 5788 5603 3 1647 2114 269 51 18 chr6 139235028 139235658 -10281379 + Lx5 LINE L1 6455 7050 0 3 1647 219 188 61 20 chr6 139235792 139235841 -10281196 - B1F1 SINE Alu -26 123 73 3 1647 549 44 0 0 chr6 139236222 139236290 -10280747 + (GAAAA)n Simple_repeat Simple_repeat 1 68 0 3 1647 30 0 0 0 chr6 139237164 139237194 -10279843 + AT_rich Low_complexity Low_complexity 1 30 0 3 1647 334 190 0 0 chr6 139237328 139237386 -10279651 + ID4 SINE ID 18 75 -8 3 1647 276 200 62 0 chr6 139237334 139237399 -10279638 + ID_B1 SINE B4 25 93 -131 3 1647 431 303 74 27 chr6 139237819 139237968 -10279069 - RSINE1 SINE B4 0 165 10 3 1647 647 172 0 32 chr6 139239565 139239751 -10277286 + CT-rich Low_complexity Low_complexity 1 180 0 3 1647 443 295 11 23 chr6 139239766 139239943 -10277094 + CT-rich Low_complexity Low_complexity 2 176 0 3 1647 332 185 53 21 chr6 139239945 139240039 -10276998 - ID_B1 SINE B4 -7 217 121 3 1647 21 0 0 0 chr6 139243024 139243045 -10273992 + AT_rich Low_complexity Low_complexity 1 21 0 3 1647 207 69 0 0 chr6 139243284 139243313 -10273724 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1647 281 354 20 0 chr6 139243550 139243697 -10273340 + GA-rich Low_complexity Low_complexity 3 152 0 3 1647 230 309 20 40 chr6 139244252 139244353 -10272684 - AmnSINE1 SINE SINE -177 398 300 3 1647 24 32 0 0 chr6 139245974 139246005 -10271032 + AT_rich Low_complexity Low_complexity 1 31 0 3 1647 31 26 0 0 chr6 139246591 139246629 -10270408 + AT_rich Low_complexity Low_complexity 1 38 0 3 1647 511 171 186 179 chr6 139246649 139247011 -10270026 + RMER16 LTR ERVK 1 533 0 3 1647 401 290 152 99 chr6 139248721 139249006 -10268031 + MTEb LTR MaLR 19 309 -110 3 1647 3177 42 36 0 chr6 139249659 139250045 -10266992 + MTB LTR MaLR 1 400 0 3 1647 1956 240 123 5 chr6 139250203 139250757 -10266280 + Lx2B LINE L1 6351 6969 -31 3 1647 207 0 0 0 chr6 139250762 139250785 -10266252 + (CAAG)n Simple_repeat Simple_repeat 1 23 0 3 1647 253 268 60 12 chr6 139250935 139251018 -10266019 + MTEb LTR MaLR 277 363 -16 3 1647 276 200 0 0 chr6 139251198 139251263 -10265774 + GA-rich Low_complexity Low_complexity 1 65 0 3 1647 399 162 78 78 chr6 139251463 139251617 -10265420 - Lx7 LINE L1 -2 7694 7541 3 1647 21 57 0 0 chr6 139251989 139252024 -10265013 + AT_rich Low_complexity Low_complexity 1 35 0 3 1647 312 27 0 0 chr6 139252133 139252170 -10264867 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1647 32 0 0 0 chr6 139252293 139252325 -10264712 + AT_rich Low_complexity Low_complexity 1 32 0 3 1647 319 319 79 46 chr6 139253347 139253587 -10263450 + L1M4 LINE L1 971 1218 -5324 3 1647 895 260 9 14 chr6 139253921 139254132 -10262905 + B3 SINE B2 1 210 -6 3 1647 408 40 0 0 chr6 139254177 139254227 -10262810 + (TTA)n Simple_repeat Simple_repeat 3 52 0 3 1647 180 125 0 0 chr6 139255137 139255169 -10261868 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1647 602 277 26 47 chr6 139255616 139255809 -10261228 - B3 SINE B2 -5 193 5 3 1647 218 311 0 0 chr6 139255933 139255994 -10261043 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1647 207 0 0 0 chr6 139257412 139257435 -10259602 + (TC)n Simple_repeat Simple_repeat 1 23 0 3 1647 281 47 23 0 chr6 139257439 139257482 -10259555 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1647 323 334 9 15 chr6 139257524 139257676 -10259361 - B4 SINE B4 -14 151 1 3 1647 468 0 0 0 chr6 139258934 139258986 -10258051 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1647 215 163 23 0 chr6 139260471 139260514 -10256523 + A-rich Low_complexity Low_complexity 2 45 0 3 1647 849 277 76 4 chr6 139261434 139261684 -10255353 + MTD LTR MaLR 86 353 -66 3 1647 513 288 9 0 chr6 139261748 139261859 -10255178 + ID_B1 SINE B4 104 215 -9 3 1647 270 258 97 0 chr6 139262021 139262114 -10254923 + B3A SINE B2 41 142 -56 3 1647 459 123 0 0 chr6 139262119 139262200 -10254837 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1647 364 284 135 0 chr6 139262358 139262499 -10254538 - MER58B DNA MER1_type 0 341 182 4 1647 529 305 64 0 chr6 139262689 139262925 -10254112 - L1M5 LINE L1 -430 5810 5560 4 1647 2761 43 184 5 chr6 139263276 139263646 -10253391 - RLTR10C LTR ERVK 0 436 1 4 1647 591 321 62 47 chr6 139264499 139264774 -10252263 + B4A SINE B4 6 284 -8 4 1647 492 206 0 0 chr6 139264806 139264937 -10252100 + (CA)n Simple_repeat Simple_repeat 1 131 0 4 1647 230 289 65 84 chr6 139266177 139266332 -10250705 + RMER6B LTR ERVK 227 378 -83 4 1647 568 268 142 49 chr6 139266240 139266641 -10250396 + RMER15 LTR ERVL 45 573 -2 4 1647 326 364 74 40 chr6 139266666 139266964 -10250073 + MLT1A0 LTR MaLR 58 365 0 4 1647 298 311 168 0 chr6 139268951 139269070 -10247967 + B1F SINE Alu 1 139 -10 4 1647 536 180 16 0 chr6 139269637 139269759 -10247278 + Lx6 LINE L1 7336 7459 -1 4 1647 279 279 87 52 chr6 139270883 139271216 -10245821 - RLTR11A LTR ERVK -27 501 95 4 1647 224 120 20 0 chr6 139271391 139271441 -10245596 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 4 1647 540 311 48 68 chr6 139271443 139271741 -10245296 - MTEb LTR MaLR -29 350 52 4 1647 360 0 0 0 chr6 139272483 139272523 -10244514 + (GGA)n Simple_repeat Simple_repeat 2 41 0 4 1647 967 147 6 6 chr6 139272523 139272701 -10244336 + GA-rich Low_complexity Low_complexity 3 180 0 4 1647 190 102 0 75 chr6 139272701 139272754 -10244283 + A-rich Low_complexity Low_complexity 2 50 0 4 1647 3491 250 39 5 chr6 139272788 139273668 -10243369 - Lx9 LINE L1 -205 7439 6530 4 1647 555 16 0 0 chr6 139274122 139274186 -10242851 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1647 362 305 163 34 chr6 139274946 139275357 -10241680 + L1MCa LINE L1 66 529 -5979 4 1647 507 81 0 0 chr6 139275673 139275747 -10241290 - L1_Mur1 LINE L1 -2784 3102 3029 4 1647 215 173 54 71 chr6 139275747 139275803 -10241234 - B1F1 SINE Alu -39 110 56 4 1647 25 31 0 0 chr6 139275958 139275990 -10241047 + AT_rich Low_complexity Low_complexity 1 32 0 4 1647 239 318 42 76 chr6 139276724 139276843 -10240194 - B3 SINE B2 -7 209 95 4 1647 28 29 0 0 chr6 139277758 139277793 -10239244 + AT_rich Low_complexity Low_complexity 1 35 0 4 1647 635 120 26 0 chr6 139277795 139277912 -10239125 - Lx3A LINE L1 -4 6977 6858 4 1647 294 369 10 10 chr6 139277969 139277982 -10239055 + ID SINE ID 69 81 -143 4 1647 396 294 30 0 chr6 139277982 139278096 -10238941 + B1F2 SINE Alu 1 116 -1 4 1647 417 234 54 0 chr6 139278313 139278424 -10238613 + B3A SINE B2 2 118 -80 4 1647 699 46 0 0 chr6 139278424 139278511 -10238526 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 1647 4912 70 16 3 chr6 139278789 139279458 -10237579 - L1Md_F2 LINE L1 0 6582 5909 4 1647 23 33 0 0 chr6 139279522 139279552 -10237485 + AT_rich Low_complexity Low_complexity 1 30 0 4 1647 202 244 0 25 chr6 139279573 139279653 -10237384 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1647 456 67 0 0 chr6 139279664 139279724 -10237313 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1647 566 357 72 26 chr6 139279796 139280061 -10236976 + B4A SINE B4 6 282 -10 4 1647 41 48 0 0 chr6 139281400 139281462 -10235575 + AT_rich Low_complexity Low_complexity 1 62 0 4 1647 2657 277 35 14 chr6 139281992 139282758 -10234279 + Lx7 LINE L1 6143 6924 -772 4 1647 1224 94 29 38 chr6 139282779 139282989 -10234048 - Lx2 LINE L1 -15 6982 6775 4 1647 6950 112 17 21 chr6 139282989 139284050 -10232987 - Lx2 LINE L1 -354 6643 5587 4 1647 1187 289 138 16 chr6 139284060 139284565 -10232472 + Lx7 LINE L1 6921 7476 -220 4 1647 419 73 15 0 chr6 139284565 139284633 -10232404 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 1647 1187 289 138 16 chr6 139284633 139284817 -10232220 + Lx7 LINE L1 7477 7693 -3 4 1647 225 346 37 49 chr6 139284944 139285026 -10232011 - LTR41 LTR ERVL -329 439 359 4 1647 343 294 100 30 chr6 139285636 139285906 -10231131 - L1MD LINE L1 -2884 3262 2974 4 1647 387 376 34 0 chr6 139285938 139286087 -10230950 - RSINE1 SINE B4 -7 158 5 4 1647 253 346 92 18 chr6 139286246 139286735 -10230302 - L1M4 LINE L1 -3286 2860 2336 4 1647 27 0 0 0 chr6 139287447 139287474 -10229563 + AT_rich Low_complexity Low_complexity 1 27 0 4 1647 44 46 0 0 chr6 139289153 139289218 -10227819 + AT_rich Low_complexity Low_complexity 1 65 0 4 1647 613 299 53 0 chr6 139289812 139289999 -10227038 - B3A SINE B2 -1 197 1 4 1647 264 219 24 12 chr6 139290133 139290216 -10226821 + (TA)n Simple_repeat Simple_repeat 1 84 0 4 1647 431 333 20 14 chr6 139290603 139290749 -10226288 + B3A SINE B2 2 148 -50 4 1647 396 0 0 0 chr6 139290749 139290793 -10226244 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1647 27 114 0 0 chr6 139293403 139293535 -10223502 + AT_rich Low_complexity Low_complexity 1 132 0 4 1647 410 349 51 89 chr6 139293755 139293969 -10223068 + ID_B1 SINE B4 3 208 -16 4 1647 227 361 49 25 chr6 139293865 139293972 -10223065 + B1F SINE Alu 24 136 -13 4 1647 279 0 0 0 chr6 139293972 139294003 -10223034 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1647 227 361 49 25 chr6 139294003 139294017 -10223020 + B1F SINE Alu 137 148 -1 4 1647 1009 273 99 13 chr6 139294094 139294476 -10222561 - MTD LTR MaLR -4 415 1 4 1647 629 151 0 8 chr6 139294794 139294914 -10222123 + (TA)n Simple_repeat Simple_repeat 2 120 0 4 1647 317 300 45 40 chr6 139295126 139295303 -10221734 + B3A SINE B2 2 179 -19 4 1647 315 322 69 9 chr6 139296153 139296269 -10220768 + RSINE1 SINE B4 3 125 -40 4 1647 756 37 28 0 chr6 139296288 139296396 -10220641 + (TAGA)n Simple_repeat Simple_repeat 1 111 0 4 1647 530 260 52 30 chr6 139297448 139297583 -10219454 + ID_B1 SINE B4 87 224 0 4 1647 421 356 34 20 chr6 139298698 139298847 -10218190 + RSINE1 SINE B4 9 159 -6 4 1647 227 398 39 0 chr6 139298937 139299040 -10217997 - L2a LINE L2 -1 3425 3319 4 1647 345 198 89 0 chr6 139299210 139299311 -10217726 + Lx5 LINE L1 6937 7046 -4 4 1647 284 353 0 101 chr6 139299484 139299613 -10217424 + RSINE1 SINE B4 5 120 -45 4 1647 1107 162 63 10 chr6 139301347 139301553 -10215484 - Lx2B LINE L1 -408 6592 6376 4 1647 1123 254 82 32 chr6 139301556 139301934 -10215103 + Lx2B LINE L1 6594 6990 -10 4 1647 25 65 0 0 chr6 139302352 139302398 -10214639 + AT_rich Low_complexity Low_complexity 1 46 0 4 1647 228 60 39 39 chr6 139302618 139302670 -10214367 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 4 1647 1128 82 0 0 chr6 139302671 139302818 -10214219 - B1_Mus2 SINE Alu 0 147 1 4 1647 2654 109 13 57 chr6 139303211 139303668 -10213369 - Lx3A LINE L1 -7 6974 6538 4 1647 300 152 80 92 chr6 139303828 139304067 -10212970 + RMER17D LTR ERVK 285 520 -369 4 1647 4381 78 60 0 chr6 139305026 139305629 -10211408 + L1_Mus1 LINE L1 5929 6567 0 4 1647 393 22 0 0 chr6 139306003 139306049 -10210988 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1647 39134 29 1 6 chr6 139306619 139312766 -10204271 - L1Md_T LINE L1 -1 6581 473 4 1647 469 258 234 0 chr6 139313433 139313557 -10203480 + RSINE1 SINE B4 12 164 -1 4 1647 396 147 0 0 chr6 139313558 139313633 -10203404 + (CA)n Simple_repeat Simple_repeat 1 75 0 4 1647 21 0 0 0 chr6 139313665 139313686 -10203351 + AT_rich Low_complexity Low_complexity 1 21 0 4 1647 543 256 150 6 chr6 139313834 139314007 -10203030 + B3 SINE B2 4 201 -15 4 1647 22 0 0 0 chr6 139314482 139314504 -10202533 + AT_rich Low_complexity Low_complexity 1 22 0 4 1647 23 0 0 0 chr6 139315109 139315132 -10201905 + AT_rich Low_complexity Low_complexity 1 23 0 4 1647 1986 119 183 13 chr6 139315204 139315586 -10201451 - RLTR44B LTR ERVK 0 449 3 4 1647 215 212 249 15 chr6 139315620 139315720 -10201317 - MIRc SINE MIR -158 118 3 4 1647 411 331 13 52 chr6 139315957 139316110 -10200927 + RSINE1 SINE B4 19 165 0 4 1647 509 338 14 0 chr6 139316160 139316299 -10200738 + RSINE1 SINE B4 2 142 -23 4 1647 525 99 0 0 chr6 139316304 139316385 -10200652 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 1647 241 258 58 43 chr6 139316385 139316444 -10200593 + B1F SINE Alu 21 82 -67 4 1647 21 82 0 0 chr6 139316462 139316511 -10200526 + AT_rich Low_complexity Low_complexity 1 49 0 4 1647 6077 140 50 13 chr6 139317426 139318483 -10198554 + Lx3B LINE L1 5873 6968 -5 4 1647 10661 97 12 5 chr6 139318502 139320890 -10196147 + L1_Mus3 LINE L1 4229 6636 -2 4 1647 25 51 0 0 chr6 139320890 139320929 -10196108 + AT_rich Low_complexity Low_complexity 1 39 0 4 1647 36269 32 1 7 chr6 139321771 139326773 -10190264 + L1Md_T LINE L1 624 5586 -297 4 1647 8182 43 1 0 chr6 139326773 139327767 -10189270 + L1Md_T LINE L1 5587 6581 -1 4 1647 30 0 0 0 chr6 139328265 139328295 -10188742 + AT_rich Low_complexity Low_complexity 1 30 0 4 1647 279 0 0 0 chr6 139329269 139329300 -10187737 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4 1647 357 24 0 0 chr6 139329301 139329343 -10187694 + (TGG)n Simple_repeat Simple_repeat 2 43 0 4 1648 3275 163 40 26 chr6 139329951 139330531 -10186506 + Lx2B LINE L1 6409 6996 -4 4 1648 662 24 0 12 chr6 139332362 139332447 -10184590 + (GTTTG)n Simple_repeat Simple_repeat 1 84 0 4 1648 216 0 0 0 chr6 139332447 139332471 -10184566 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1648 226 311 40 94 chr6 139332703 139332852 -10184185 + MLT1D LTR MaLR 2 142 -485 4 1648 461 256 47 40 chr6 139332855 139333153 -10183884 - Lx9 LINE L1 -34 7610 7369 4 1648 292 373 125 10 chr6 139333234 139333529 -10183508 + MLT1D LTR MaLR 171 499 -6 4 1648 1586 120 11 43 chr6 139333639 139333918 -10183119 - Lx2 LINE L1 0 7000 6731 4 1648 2256 176 79 4 chr6 139333919 139334414 -10182623 - Lx2 LINE L1 -566 6431 5900 4 1648 217 372 0 0 chr6 139334776 139334870 -10182167 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1648 655 352 46 8 chr6 139334878 139335141 -10181896 - B4A SINE B4 0 292 20 4 1648 1150 65 6 6 chr6 139335527 139335683 -10181354 + L1_Mus1 LINE L1 6408 6563 -4 4 1648 235 282 80 16 chr6 139336389 139336588 -10180449 + L1MA7 LINE L1 5785 5990 -310 5 1648 270 278 10 0 chr6 139336740 139336837 -10180200 + L1MA7 LINE L1 6190 6287 -4 5 1648 254 89 0 62 chr6 139337595 139337643 -10179394 + L1ME3 LINE L1 5893 5937 -225 5 1648 21 0 0 0 chr6 139338071 139338092 -10178945 + AT_rich Low_complexity Low_complexity 1 21 0 5 1648 538 322 19 19 chr6 139338182 139338391 -10178646 + B3 SINE B2 2 210 -6 5 1648 518 310 175 5 chr6 139339199 139339416 -10177621 + B4A SINE B4 3 256 -36 5 1648 30 27 0 0 chr6 139339547 139339584 -10177453 + AT_rich Low_complexity Low_complexity 1 37 0 5 1648 316 276 223 19 chr6 139340655 139340781 -10176256 - L1M4c LINE L1 -5431 953 813 5 1648 213 121 0 0 chr6 139340781 139340814 -10176223 + (ATG)n Simple_repeat Simple_repeat 3 35 0 5 1648 316 276 223 19 chr6 139340814 139340997 -10176040 - L1M4c LINE L1 -5572 812 582 5 1648 387 318 23 8 chr6 139341191 139341324 -10175713 + B1F SINE Alu 5 139 -10 5 1648 308 43 0 21 chr6 139341335 139341382 -10175655 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 5 1648 715 157 93 16 chr6 139341382 139341511 -10175526 - B1_Mus1 SINE Alu -9 139 1 5 1648 423 56 0 0 chr6 139341680 139341734 -10175303 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1648 3212 38 0 13 chr6 139343017 139343413 -10173624 - L1Md_F2 LINE L1 0 6582 6192 5 1648 1654 20 0 0 chr6 139344100 139344298 -10172739 + L1Md_T LINE L1 5389 5586 -297 5 1648 8094 52 0 0 chr6 139344298 139345294 -10171743 + L1Md_T LINE L1 5587 6582 0 5 1648 3322 129 26 11 chr6 139345373 139345920 -10171117 - Lx3A LINE L1 -7 6974 6420 5 1648 774 75 0 0 chr6 139345923 139346029 -10171008 + Lx3A LINE L1 6316 6421 -560 5 1648 27 29 0 0 chr6 139346076 139346110 -10170927 + AT_rich Low_complexity Low_complexity 1 34 0 5 1648 399 364 63 0 chr6 139347277 139347420 -10169617 + B4A SINE B4 1 152 -140 5 1648 889 100 29 0 chr6 139347488 139347658 -10169379 + (CA)n Simple_repeat Simple_repeat 2 176 0 5 1648 24 53 0 0 chr6 139347690 139347728 -10169309 + AT_rich Low_complexity Low_complexity 1 38 0 5 1648 1142 65 0 0 chr6 139347779 139347917 -10169120 + B1_Mus1 SINE Alu 1 138 -10 5 1648 678 238 168 0 chr6 139348519 139348704 -10168333 - B3 SINE B2 0 216 1 5 1648 441 342 26 13 chr6 139349322 139349473 -10167564 + MTEb LTR MaLR 1 153 -226 5 1648 457 184 66 58 chr6 139349459 139349580 -10167457 + MTEb LTR MaLR 258 379 0 5 1648 2041 279 74 24 chr6 139350124 139350883 -10166154 - Lx8 LINE L1 -476 6997 6201 5 1648 588 40 0 0 chr6 139350894 139350969 -10166068 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1648 347 189 26 18 chr6 139351294 139351407 -10165630 + CT-rich Low_complexity Low_complexity 4 117 0 5 1648 21 0 0 0 chr6 139351601 139351622 -10165415 + AT_rich Low_complexity Low_complexity 1 21 0 5 1648 559 296 49 5 chr6 139352085 139352289 -10164748 + B3 SINE B2 1 213 -3 5 1648 541 305 232 30 chr6 139352454 139352687 -10164350 + B4 SINE B4 11 290 -2 5 1648 351 0 0 0 chr6 139353356 139353395 -10163642 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 5 1648 6382 169 69 6 chr6 139353396 139354642 -10162395 - Lx3C LINE L1 -11 6965 5641 5 1648 25 51 0 0 chr6 139355021 139355060 -10161977 + AT_rich Low_complexity Low_complexity 1 39 0 5 1648 270 0 0 0 chr6 139355485 139355515 -10161522 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1648 337 319 42 49 chr6 139355813 139355889 -10161148 + ORR1E LTR MaLR 7 83 -276 5 1648 2189 108 9 42 chr6 139355889 139356226 -10160811 - ORR1A2 LTR MaLR -1 326 1 5 1648 337 319 42 49 chr6 139356226 139356291 -10160746 + ORR1E LTR MaLR 84 147 -212 5 1648 325 332 33 95 chr6 139356518 139356759 -10160278 - MLT1D LTR MaLR -394 233 1 5 1648 381 338 69 61 chr6 139357558 139358068 -10158969 + L1M5 LINE L1 5200 5719 -454 5 1648 10081 3 0 0 chr6 139358343 139359519 -10157518 + L1Md_A LINE L1 4411 5586 -297 5 1648 9071 2 0 0 chr6 139359519 139360515 -10156522 + L1Md_A LINE L1 5587 6582 0 5 1648 432 105 0 0 chr6 139360682 139360758 -10156279 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 1648 6779 148 308 8 chr6 139361424 139361738 -10155299 + Lx2B LINE L1 4448 4870 -1007 5 1648 1112 45 0 0 chr6 139361738 139361872 -10155165 + B1_Mus2 SINE Alu 1 134 -13 5 1648 261 0 0 0 chr6 139361872 139361901 -10155136 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 5 1648 6779 179 28 18 chr6 139361901 139363990 -10153047 + Lx2B LINE L1 4871 6982 -18 5 1648 818 119 19 19 chr6 139364014 139364073 -10152964 + polypurine Low_complexity Low_complexity 3 62 0 5 1648 1061 131 6 0 chr6 139364073 139364249 -10152788 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 5 1648 818 119 19 19 chr6 139364249 139364351 -10152686 + polypurine Low_complexity Low_complexity 63 164 0 5 1648 1593 203 68 16 chr6 139364938 139365303 -10151734 - ORR1C2 LTR MaLR 0 384 1 5 1648 378 0 0 0 chr6 139365693 139365735 -10151302 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1648 586 279 22 60 chr6 139366047 139366230 -10150807 - B3 SINE B2 -27 189 14 5 1648 1386 195 65 0 chr6 139366294 139366586 -10150451 - ORR1C1 LTR MaLR -63 315 5 5 1648 788 339 81 26 chr6 139366690 139367159 -10149878 + RMER5 LTR ERV1 40 534 0 5 1648 462 61 0 0 chr6 139367400 139367466 -10149571 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1648 423 0 0 0 chr6 139368067 139368114 -10148923 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 1648 1120 79 0 0 chr6 139368116 139368256 -10148781 - B1_Mus2 SINE Alu -5 142 3 5 1648 500 208 70 102 chr6 139369210 139369397 -10147640 - Lx4A LINE L1 0 7058 6878 5 1648 23 0 0 0 chr6 139369449 139369472 -10147565 + AT_rich Low_complexity Low_complexity 1 23 0 5 1648 348 304 80 0 chr6 139369654 139369766 -10147271 - MIRb SINE MIR -56 212 92 5 1648 717 280 14 9 chr6 139370435 139370651 -10146386 - ID_B1 SINE B4 -7 217 1 5 1648 294 95 0 0 chr6 139371260 139371302 -10145735 + (CATA)n Simple_repeat Simple_repeat 2 43 0 5 1648 339 25 0 0 chr6 139371598 139371638 -10145399 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1648 318 408 35 6 chr6 139371969 139372139 -10144898 + B4A SINE B4 114 288 -4 5 1648 1372 264 19 42 chr6 139372368 139372728 -10144309 - MTD LTR MaLR -67 352 1 5 1648 213 39 0 0 chr6 139372883 139372909 -10144128 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1648 710 326 129 16 chr6 139374388 139374697 -10142340 - MTEa LTR MaLR 0 379 36 5 1648 3476 113 15 3 chr6 139375357 139375988 -10141049 - Lx3C LINE L1 -1030 5946 5311 5 1648 5696 136 52 26 chr6 139375988 139376991 -10140046 + Lx3C LINE L1 5941 6969 -7 5 1648 6116 69 6 2 chr6 139377790 139378784 -10138253 - L1Md_F2 LINE L1 -555 6027 5030 5 1648 4268 71 2 4 chr6 139378784 139379356 -10137681 + L1Md_F2 LINE L1 6018 6582 0 5 1648 1929 245 26 12 chr6 139379538 139379968 -10137069 + Lx6 LINE L1 6889 7324 -136 5 1648 570 124 0 0 chr6 139379973 139380062 -10136975 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 5 1648 351 224 137 8 chr6 139380062 139380179 -10136858 + Lx6 LINE L1 7319 7450 -10 5 1648 330 317 62 7 chr6 139380191 139380337 -10136700 + L1M4 LINE L1 5195 5348 -798 5 1648 23 0 0 0 chr6 139380384 139380407 -10136630 + AT_rich Low_complexity Low_complexity 1 23 0 5 1648 24 0 0 0 chr6 139380530 139380554 -10136483 + AT_rich Low_complexity Low_complexity 1 24 0 5 1648 194 0 39 0 chr6 139381985 139382011 -10135026 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1648 477 0 0 0 chr6 139382959 139383012 -10134025 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1648 492 18 0 0 chr6 139383012 139383068 -10133969 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1648 2900 294 43 82 chr6 139384213 139384328 -10132709 - Lx5 LINE L1 0 7050 6940 5 1648 194 0 39 0 chr6 139384328 139384354 -10132683 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1648 2900 262 35 57 chr6 139384354 139385956 -10131081 - Lx5 LINE L1 -111 6939 5379 5 1648 1798 219 76 76 chr6 139385963 139386530 -10130507 + RMER2 LTR ERV1 1 567 0 5 1648 12199 142 21 12 chr6 139387144 139388543 -10128494 + Lx4A LINE L1 670 2049 -3828 5 1648 477 0 0 0 chr6 139388543 139388596 -10128441 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1648 12199 125 31 16 chr6 139388596 139389991 -10127046 + Lx4A LINE L1 2050 3498 -2379 5 1648 7996 130 23 76 chr6 139389987 139392805 -10124232 + Lx4A LINE L1 4355 7039 -19 5 1648 457 16 0 31 chr6 139392810 139392874 -10124163 + (TAA)n Simple_repeat Simple_repeat 2 63 0 5 1648 186 133 0 0 chr6 139395170 139395200 -10121837 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 5 1648 633 272 25 31 chr6 139395654 139395817 -10121220 - B3A SINE B2 -34 164 3 5 1648 3859 164 27 9 chr6 139395817 139396556 -10120481 - RMER6A LTR ERVK 0 756 5 5 1648 200 34 0 33 chr6 139396582 139396612 -10120425 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1648 1969 107 40 16 chr6 139396992 139397315 -10119722 - IAPEY_LTR LTR ERVK 0 385 55 5 1648 415 299 42 26 chr6 139398279 139398468 -10118569 + B3A SINE B2 1 192 -6 5 1648 3905 55 18 0 chr6 139398976 139399469 -10117568 + L1_Mus1 LINE L1 6066 6567 0 5 1648 1385 276 48 37 chr6 139399511 139400127 -10116910 - Lx6 LINE L1 -24 7436 6507 5 1648 252 0 0 0 chr6 139400127 139400155 -10116882 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 5 1648 478 286 81 21 chr6 139400155 139400208 -10116829 - Lx6 LINE L1 -706 6754 6690 5 1648 493 226 211 7 chr6 139401061 139401208 -10115829 - MTD LTR MaLR -15 404 228 5 1648 556 307 120 0 chr6 139401258 139401450 -10115587 - B3 SINE B2 -1 215 1 5 1648 386 311 19 19 chr6 139401450 139401581 -10115456 - MTD LTR MaLR -207 212 82 5 1648 24 0 0 0 chr6 139401667 139401691 -10115346 + AT_rich Low_complexity Low_complexity 1 24 0 5 1648 396 0 0 0 chr6 139403322 139403366 -10113671 + (TTA)n Simple_repeat Simple_repeat 3 46 0 5 1648 491 151 0 0 chr6 139403528 139403601 -10113436 + tRNA-Lys-AAG tRNA tRNA 2 74 -2 5 1648 22 0 0 0 chr6 139403611 139403633 -10113404 + AT_rich Low_complexity Low_complexity 1 22 0 5 1648 1478 231 94 54 chr6 139403644 139404124 -10112913 - RLTR20B3 LTR ERVK -56 521 23 5 1648 241 358 65 0 chr6 139405210 139405333 -10111704 - MER70B LTR ERVL 0 578 448 5 1648 426 254 35 26 chr6 139405372 139405598 -10111439 + L1MC LINE L1 3018 3245 -2901 5 1648 254 225 141 8 chr6 139405682 139405803 -10111234 + Lx8 LINE L1 6895 7031 -442 5 1648 192 125 0 0 chr6 139405803 139405835 -10111202 + (GGA)n Simple_repeat Simple_repeat 2 33 0 5 1648 350 354 55 25 chr6 139405835 139406035 -10111002 + Lx8 LINE L1 6988 7193 -280 5 1648 426 261 11 0 chr6 139406233 139406325 -10110712 + PB1D10 SINE Alu 1 93 -24 5 1648 221 196 36 27 chr6 139406427 139406537 -10110500 + (CATATA)n Simple_repeat Simple_repeat 1 111 0 6 1648 260 0 57 0 chr6 139406572 139406607 -10110430 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 6 1648 446 0 19 0 chr6 139406618 139406672 -10110365 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1648 297 0 0 0 chr6 139406672 139406704 -10110333 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1648 24 32 0 0 chr6 139407880 139407911 -10109126 + AT_rich Low_complexity Low_complexity 1 31 0 6 1648 653 53 11 0 chr6 139408183 139408277 -10108760 + (TG)n Simple_repeat Simple_repeat 1 95 0 6 1648 542 248 39 39 chr6 139410270 139410465 -10106572 - B3 SINE B2 0 195 1 6 1648 225 0 0 0 chr6 139410520 139410545 -10106492 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1648 414 0 0 0 chr6 139410545 139410590 -10106447 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1648 495 85 0 78 chr6 139410622 139410737 -10106300 + (TG)n Simple_repeat Simple_repeat 1 106 0 6 1648 387 0 0 0 chr6 139410823 139410866 -10106171 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1648 238 227 273 0 chr6 139411482 139411570 -10105467 + RMER15 LTR ERVL 26 137 -438 6 1648 784 222 194 4 chr6 139411593 139411846 -10105191 + RMER15 LTR ERVL 273 573 -2 6 1648 568 223 145 13 chr6 139412968 139413127 -10103910 - B3A SINE B2 -18 180 1 6 1648 699 304 43 98 chr6 139413185 139413513 -10103524 + MTEb LTR MaLR 8 317 -62 6 1648 207 0 0 0 chr6 139413527 139413550 -10103487 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1648 195 42 0 0 chr6 139413569 139413593 -10103444 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1648 315 238 225 52 chr6 139413603 139413794 -10103243 - MT2A LTR ERVL -2 531 308 6 1648 259 366 43 43 chr6 139413816 139414050 -10102987 - MT2A LTR ERVL -295 238 5 6 1648 282 341 111 55 chr6 139414334 139414551 -10102486 - ORR1E LTR MaLR -130 229 1 6 1648 4844 157 21 9 chr6 139415248 139415938 -10101099 - Lx LINE L1 0 6654 5954 6 1648 2785 67 0 0 chr6 139415938 139416284 -10100753 - ORR1A1 LTR MaLR 0 346 1 6 1648 4844 157 21 9 chr6 139416284 139416410 -10100627 - Lx LINE L1 -701 5953 5828 6 1648 317 122 0 58 chr6 139416536 139416588 -10100449 - HAL1-3A_ME LINE L1 -834 2024 1976 6 1648 258 253 12 25 chr6 139416589 139416670 -10100367 + (TATG)n Simple_repeat Simple_repeat 3 82 0 6 1648 355 303 72 35 chr6 139417344 139417383 -10099654 + L1M3 LINE L1 3927 3968 -2172 6 1648 360 0 0 0 chr6 139417383 139417423 -10099614 + (TATAA)n Simple_repeat Simple_repeat 1 40 0 6 1648 355 303 72 35 chr6 139417423 139417701 -10099336 + L1M3 LINE L1 3969 4256 -1884 6 1648 1568 127 32 0 chr6 139417843 139418096 -10098941 + L1_Mus3 LINE L1 6378 6638 0 6 1648 247 320 88 40 chr6 139418126 139418845 -10098192 + L1M3 LINE L1 4633 5385 -755 6 1648 4879 136 9 14 chr6 139418904 139419705 -10097332 - RLTR21 LTR ERVK -589 983 187 6 1648 3903 52 0 0 chr6 139419707 139420211 -10096826 + L1Md_F2 LINE L1 5083 5586 -297 6 1648 8007 52 2 2 chr6 139420211 139421206 -10095831 + L1Md_F2 LINE L1 5587 6581 -1 6 1648 721 230 93 6 chr6 139421207 139421369 -10095668 - RLTR21 LTR ERVK -1396 176 1 6 1648 324 348 28 22 chr6 139421938 139422120 -10094917 + B3A SINE B2 2 184 -14 6 1648 851 80 7 0 chr6 139423129 139423267 -10093770 + (TC)n Simple_repeat Simple_repeat 2 140 0 6 1648 616 268 13 0 chr6 139423309 139423462 -10093575 - RSINE1 SINE B4 -10 155 1 6 1648 307 263 10 10 chr6 139423691 139423791 -10093246 - L1M2 LINE L1 -574 5738 5639 6 1648 65 66 0 0 chr6 139426052 139426173 -10090864 + AT_rich Low_complexity Low_complexity 1 121 0 6 1648 663 246 119 10 chr6 139426190 139426383 -10090654 - B3 SINE B2 -2 214 1 6 1648 514 357 11 42 chr6 139426584 139426774 -10090263 + B3A SINE B2 1 184 -14 6 1648 2433 240 69 26 chr6 139427334 139427380 -10089657 + L1_Rod LINE L1 4877 4921 -926 6 1648 3912 51 0 2 chr6 139427380 139427867 -10089170 + L1Md_F3 LINE L1 6099 6584 0 6 1648 2433 240 69 26 chr6 139427867 139428702 -10088335 + L1_Rod LINE L1 4922 5796 -51 6 1648 876 276 164 4 chr6 139429207 139429550 -10087487 + MTD LTR MaLR 1 403 -16 6 1648 285 269 0 15 chr6 139429656 139429724 -10087313 + MTEb LTR MaLR 66 132 -247 6 1648 5672 107 20 9 chr6 139429753 139431509 -10085528 + L1VL2 LINE L1 114 1888 -1727 6 1648 28140 112 19 10 chr6 139431569 139437393 -10079644 + L1_Mus2 LINE L1 675 6565 -1 6 1648 15381 146 15 5 chr6 139437399 139441013 -10076024 + Lx LINE L1 2997 6649 -5 6 1648 391 258 146 47 chr6 139441013 139441184 -10075853 + MTEb LTR MaLR 164 351 -28 6 1648 210 37 0 0 chr6 139443644 139443671 -10073366 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1648 636 14 0 0 chr6 139443784 139443857 -10073180 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 1648 420 104 0 0 chr6 139443857 139443923 -10073114 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1648 510 312 94 17 chr6 139443940 139444189 -10072848 - B4 SINE B4 -19 273 8 6 1648 522 276 38 42 chr6 139444515 139444727 -10072310 + B3 SINE B2 1 211 -5 6 1648 450 0 0 0 chr6 139445190 139445240 -10071797 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1648 733 263 19 0 chr6 139445257 139445413 -10071624 - B3 SINE B2 -57 159 1 6 1648 24 0 0 0 chr6 139445919 139445943 -10071094 + AT_rich Low_complexity Low_complexity 1 24 0 6 1648 301 341 132 15 chr6 139446094 139446427 -10070610 + L2a LINE L2 2347 2718 -701 6 1648 278 354 69 35 chr6 139446978 139447180 -10069857 + L2a LINE L2 3217 3425 -1 6 1648 562 315 48 0 chr6 139447290 139447455 -10069582 + B3A SINE B2 9 181 -17 6 1648 487 0 16 16 chr6 139448589 139448653 -10068384 + (GAAAA)n Simple_repeat Simple_repeat 2 65 0 6 1648 869 271 177 25 chr6 139450764 139451244 -10065793 - Lx8 LINE L1 -4 7469 6917 6 1648 361 188 102 0 chr6 139451350 139451428 -10065609 + B3 SINE B2 56 142 -56 6 1648 189 74 0 0 chr6 139451435 139451462 -10065575 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1648 477 0 0 0 chr6 139451462 139451514 -10065523 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1648 587 14 14 0 chr6 139452259 139452331 -10064706 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 1648 331 316 44 0 chr6 139452693 139452807 -10064230 + B1F1 SINE Alu 10 128 -21 6 1648 204 40 0 0 chr6 139452905 139452930 -10064107 + (CAT)n Simple_repeat Simple_repeat 3 27 0 6 1648 207 139 0 0 chr6 139453813 139453849 -10063188 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 6 1648 290 235 29 0 chr6 139453849 139453923 -10063114 - ID4_ SINE ID -70 82 3 6 1648 726 291 132 13 chr6 139453943 139454323 -10062714 - Lx8 LINE L1 0 7473 7049 6 1648 423 0 0 0 chr6 139454361 139454408 -10062629 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1648 807 67 0 0 chr6 139454408 139454526 -10062511 + (GA)n Simple_repeat Simple_repeat 1 119 0 6 1648 992 245 9 0 chr6 139454956 139455168 -10061869 + B3 SINE B2 3 216 0 6 1648 3723 212 89 8 chr6 139455862 139456748 -10060289 - RMER17B LTR ERVK 0 958 1 6 1648 201 74 0 0 chr6 139456804 139456831 -10060206 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 1648 486 234 66 78 chr6 139457727 139457894 -10059143 + B3A SINE B2 51 215 -1 6 1648 1145 193 133 74 chr6 139457919 139458272 -10058765 + ORR1D1 LTR MaLR 1 374 0 6 1648 315 348 109 0 chr6 139458853 139458991 -10058046 + RSINE1 SINE B4 1 153 -12 6 1648 271 349 119 26 chr6 139460259 139460453 -10056584 - LTR33 LTR ERVL -301 214 3 6 1649 34 0 0 0 chr6 139461774 139461808 -10055229 + AT_rich Low_complexity Low_complexity 1 34 0 6 1649 347 265 12 0 chr6 139462440 139462523 -10054514 + B4 SINE B4 2 85 -207 6 1649 273 210 0 0 chr6 139462524 139462586 -10054451 + (TAA)n Simple_repeat Simple_repeat 1 62 0 6 1649 802 206 13 0 chr6 139462586 139462741 -10054296 + Lx9 LINE L1 7088 7244 -400 6 1649 425 147 69 0 chr6 139462764 139462866 -10054171 + Lx9 LINE L1 7536 7644 0 6 1649 337 253 251 31 chr6 139462895 139463000 -10054037 + B4A SINE B4 78 214 -78 6 1649 477 34 0 0 chr6 139463000 139463059 -10053978 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1649 337 253 251 31 chr6 139463059 139463116 -10053921 + B4A SINE B4 215 275 -17 6 1649 241 284 12 24 chr6 139463740 139463823 -10053214 - MTE2b LTR MaLR -23 356 275 6 1649 696 316 36 18 chr6 139465008 139465285 -10051752 + B4 SINE B4 5 286 -6 6 1649 2385 96 16 0 chr6 139465372 139465694 -10051343 - ORR1A2 LTR MaLR 0 327 1 6 1649 22 35 0 0 chr6 139467940 139467969 -10049068 + AT_rich Low_complexity Low_complexity 1 29 0 6 1649 571 349 102 8 chr6 139468400 139468764 -10048273 - Tigger6b DNA MER2_type -1199 398 1 6 1649 393 102 0 0 chr6 139468771 139468830 -10048207 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1649 773 264 62 9 chr6 139469033 139469243 -10047794 - ID_B1 SINE B4 0 224 4 6 1649 649 293 38 9 chr6 139469630 139469840 -10047197 - B3 SINE B2 0 216 1 6 1649 261 0 0 0 chr6 139469897 139469926 -10047111 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1649 1791 239 37 62 chr6 139470235 139470693 -10046344 + RMER19C LTR ERVK 138 584 -27 6 1649 1850 31 5 0 chr6 139470693 139470915 -10046122 + L1Md_T LINE L1 6360 6582 0 6 1649 1791 239 37 62 chr6 139470915 139470942 -10046095 + RMER19C LTR ERVK 585 611 0 6 1649 1850 195 36 14 chr6 139471274 139471633 -10045404 + ORR1B2 LTR MaLR 1 367 0 6 1649 213 39 0 0 chr6 139471926 139471952 -10045085 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1649 21 0 0 0 chr6 139473328 139473349 -10043688 + AT_rich Low_complexity Low_complexity 1 21 0 6 1649 291 272 0 0 chr6 139474175 139474289 -10042748 + G-rich Low_complexity Low_complexity 1 114 0 6 1649 436 307 11 11 chr6 139474289 139474467 -10042570 + GA-rich Low_complexity Low_complexity 3 180 0 6 1649 276 40 60 0 chr6 139474899 139474949 -10042088 + (CAAAAA)n Simple_repeat Simple_repeat 4 56 0 6 1649 630 267 34 5 chr6 139475391 139475572 -10041465 + B3 SINE B2 17 198 0 6 1649 200 114 29 0 chr6 139475987 139476022 -10041015 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1649 305 379 18 24 chr6 139476668 139476833 -10040204 + B4A SINE B4 126 289 -3 6 1649 198 143 0 0 chr6 139477257 139477292 -10039745 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 6 1649 324 216 0 0 chr6 139477480 139477554 -10039483 - Lx5 LINE L1 -782 6268 6195 6 1649 3565 210 36 1 chr6 139477603 139478374 -10038663 + Lx5 LINE L1 6242 7039 -11 6 1649 214 246 16 0 chr6 139478823 139478884 -10038153 + GA-rich Low_complexity Low_complexity 2 63 0 6 1649 265 167 0 0 chr6 139478986 139479028 -10038009 + B2_Mm2 SINE B2 1 42 -153 7 1649 4931 85 3 0 chr6 139479028 139479735 -10037302 + L1_Mm LINE L1 4186 4894 -989 7 1649 2519 82 79 28 chr6 139479737 139480128 -10036909 + IAPLTR2a LTR ERVK 1 411 0 7 1649 858 143 25 85 chr6 139480129 139480328 -10036709 + IAPEz-int LTR ERVK 9 195 -6286 7 1649 248 302 0 0 chr6 139480328 139480381 -10036656 + RLTR27 LTR ERVK 223 275 -34 7 1649 3582 50 26 18 chr6 139480381 139480872 -10036165 + IAPEz-int LTR ERVK 168 662 -5819 7 1649 2021 86 0 0 chr6 139480872 139481150 -10035887 + IAPEz-int LTR ERVK 1359 1636 -4845 7 1649 5888 39 4 12 chr6 139481149 139481901 -10035136 + IAPEz-int LTR ERVK 5736 6481 0 7 1649 2431 94 72 10 chr6 139481901 139482288 -10034749 + IAPLTR2a LTR ERVK 1 411 0 7 1649 7125 84 8 1 chr6 139482288 139483952 -10033085 + L1_Mus1 LINE L1 4891 6565 -2 7 1649 503 277 0 126 chr6 139483952 139484142 -10032895 + B3A SINE B2 27 192 -6 7 1649 21 0 0 0 chr6 139484142 139484163 -10032874 + AT_rich Low_complexity Low_complexity 1 21 0 7 1649 462 169 0 0 chr6 139485592 139485681 -10031356 + (TG)n Simple_repeat Simple_repeat 2 90 0 7 1649 384 306 118 0 chr6 139485770 139485914 -10031123 - RSINE1 SINE B4 -2 163 3 7 1649 799 208 71 20 chr6 139486750 139486946 -10030091 + B3 SINE B2 1 206 -10 7 1649 24 0 0 0 chr6 139487273 139487297 -10029740 + AT_rich Low_complexity Low_complexity 1 24 0 7 1649 1245 228 159 24 chr6 139487605 139487938 -10029099 + ORR1C1 LTR MaLR 1 378 0 7 1649 3928 232 84 61 chr6 139487938 139489277 -10027760 + ORR1C1-int LTR MaLR 1 1370 0 7 1649 1033 174 11 11 chr6 139489278 139489464 -10027573 + ORR1C1 LTR MaLR 2 187 -191 7 1649 540 183 0 34 chr6 139489509 139489788 -10027249 + CT-rich Low_complexity Low_complexity 1 269 0 7 1649 839 223 69 16 chr6 139489790 139490016 -10027021 + ORR1C1 LTR MaLR 96 378 0 7 1649 180 0 0 0 chr6 139490045 139490065 -10026972 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1649 414 0 0 0 chr6 139490711 139490757 -10026280 + (CTTA)n Simple_repeat Simple_repeat 3 48 0 7 1649 1311 218 169 8 chr6 139491252 139491716 -10025321 - Lx9 LINE L1 -16 7628 7090 7 1649 2120 88 7 3 chr6 139491799 139492094 -10024943 - L1_Mus3 LINE L1 0 6638 6343 7 1649 3282 63 2 22 chr6 139492127 139492542 -10024495 + L1_Mus3 LINE L1 5870 6285 -353 7 1649 5426 108 111 7 chr6 139492542 139493408 -10023629 + RMER17B LTR ERVK 1 956 -2 7 1649 3282 63 2 22 chr6 139493408 139493449 -10023588 + L1_Mus3 LINE L1 6286 6317 -321 7 1649 280 367 60 27 chr6 139493659 139493844 -10023193 + MLT2B3 LTR ERVL 20 210 -344 7 1649 1888 87 29 0 chr6 139494150 139494426 -10022611 + L1_Mus4 LINE L1 6349 6632 -4 7 1649 327 331 25 74 chr6 139495344 139495507 -10021530 + RSINE1 SINE B4 5 159 -6 7 1649 23 0 0 0 chr6 139496096 139496119 -10020918 + AT_rich Low_complexity Low_complexity 1 23 0 7 1649 866 234 58 5 chr6 139496351 139496540 -10020497 - B3 SINE B2 0 216 18 7 1649 2534 174 71 36 chr6 139496546 139497096 -10019941 - RMER15 LTR ERVL -1 574 6 7 1649 519 248 6 108 chr6 139497372 139497530 -10019507 + B4 SINE B4 3 144 -148 7 1649 440 288 166 39 chr6 139497623 139497957 -10019080 + L1MEg LINE L1 1292 1574 -4843 7 1649 450 0 0 0 chr6 139497984 139498034 -10019003 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1649 755 281 87 30 chr6 139498147 139498481 -10018556 + Lx8 LINE L1 7115 7467 -6 7 1649 251 253 21 10 chr6 139498591 139498687 -10018350 - L1M LINE L1 -757 5411 5315 7 1649 340 283 69 61 chr6 139499665 139499910 -10017127 - L1MC2 LINE L1 -126 6218 5972 7 1649 23 33 0 0 chr6 139500695 139500725 -10016312 + AT_rich Low_complexity Low_complexity 1 30 0 1 1649 524 239 0 35 chr6 139500984 139501097 -10015940 - B3 SINE B2 -12 204 96 2 1649 2364 169 115 19 chr6 139501571 139502085 -10014952 + RLTR12A LTR ERVK 2 564 -4 3 1649 230 283 149 8 chr6 139502270 139502391 -10014646 - B1F2 SINE Alu -9 140 3 4 1649 242 387 68 60 chr6 139502523 139502905 -10014132 - LTR33 LTR ERVL -55 460 76 5 1649 396 244 75 27 chr6 139502940 139503077 -10013960 - B4 SINE B4 -79 145 5 6 1649 22 35 0 0 chr6 139503246 139503275 -10013762 + AT_rich Low_complexity Low_complexity 1 29 0 7 1649 251 224 13 0 chr6 139505356 139505432 -10011605 + (TG)n Simple_repeat Simple_repeat 1 77 0 8 1649 216 0 0 0 chr6 139505506 139505530 -10011507 + (TTG)n Simple_repeat Simple_repeat 3 26 0 9 1649 324 0 0 0 chr6 139505659 139505695 -10011342 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1649 522 0 0 0 chr6 139505695 139505752 -10011285 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1649 475 303 110 45 chr6 139505789 139506196 -10010841 - RMER15 LTR ERVL -53 522 1 1 1649 390 339 15 23 chr6 139506234 139506364 -10010673 + B4A SINE B4 12 140 -152 1 1649 226 231 19 0 chr6 139506465 139506517 -10010520 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1649 698 248 14 0 chr6 139507593 139507738 -10009299 - B3 SINE B2 -68 148 2 1 1649 2480 85 0 17 chr6 139508232 139508591 -10008446 - L1Md_F2 LINE L1 0 6582 6230 1 1649 3794 90 63 5 chr6 139509302 139509906 -10007131 + Lx3_Mus LINE L1 5976 6614 -395 1 1649 2267 87 65 28 chr6 139510037 139510105 -10006932 + Lx3_Mus LINE L1 6601 6665 -316 1 1649 3993 68 60 17 chr6 139510105 139510642 -10006395 + LTRIS2 LTR ERV1 5 564 0 1 1649 2267 87 65 28 chr6 139510642 139510927 -10006110 + Lx3_Mus LINE L1 6666 6967 -14 1 1649 585 42 0 0 chr6 139510930 139511002 -10006035 + (TAAA)n Simple_repeat Simple_repeat 1 72 0 1 1649 241 357 134 19 chr6 139512067 139512335 -10004702 + L1M3c LINE L1 82 380 -5761 2 1649 1092 106 0 0 chr6 139512345 139512524 -10004513 + (GA)n Simple_repeat Simple_repeat 2 180 0 2 1649 766 304 77 14 chr6 139512539 139513100 -10003937 + L1M3c LINE L1 4471 5066 -1138 2 1649 1541 241 33 54 chr6 139513333 139513793 -10003244 - RLTR28B LTR ERVL -30 451 2 2 1649 2434 125 47 38 chr6 139514433 139514882 -10002155 - RLTR11B LTR ERVK 0 453 1 2 1649 2469 139 86 9 chr6 139515027 139515456 -10001581 - RLTR11A LTR ERVK -66 462 1 2 1649 464 332 47 30 chr6 139515653 139515889 -10001148 - RMER15 LTR ERVL 0 575 336 2 1649 292 279 0 23 chr6 139516866 139516954 -10000083 + (TATG)n Simple_repeat Simple_repeat 2 87 0 2 1649 552 30 0 0 chr6 139516966 139517032 -10000005 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1649 180 125 0 0 chr6 139517055 139517087 -9999950 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1649 821 78 186 29 chr6 139517342 139517514 -9999523 - Lx LINE L1 -2 6652 6454 2 1649 234 391 27 0 chr6 139518647 139518757 -9998280 + MER81 DNA AcHobo 1 113 -1 3 1649 422 290 0 0 chr6 139519517 139519610 -9997427 - PB1D10 SINE Alu -6 111 19 3 1649 219 343 50 61 chr6 139519621 139519801 -9997236 + MIR SINE MIR 85 262 0 3 1649 678 319 59 7 chr6 139520071 139520343 -9996694 + B4 SINE B4 5 290 -2 3 1649 869 308 39 14 chr6 139522093 139522373 -9994664 + ORR1E LTR MaLR 73 359 0 3 1649 672 291 102 34 chr6 139522482 139522549 -9994488 - L1MA4A LINE L1 -282 6018 5942 3 1649 2206 110 22 0 chr6 139522549 139522868 -9994169 + ORR1A2 LTR MaLR 2 327 0 3 1649 686 292 101 34 chr6 139522868 139523483 -9993554 - L1MA4A LINE L1 -359 5941 5296 3 1649 419 310 55 58 chr6 139523567 139523875 -9993162 - B4 SINE B4 -11 281 3 3 1649 456 19 0 0 chr6 139523925 139523978 -9993059 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1649 659 317 85 33 chr6 139523979 139524589 -9992448 - L1MA4A LINE L1 -925 5218 4577 3 1649 356 346 8 8 chr6 139524938 139525066 -9991971 - ORR1E LTR MaLR -229 130 3 3 1649 401 257 20 0 chr6 139527137 139527238 -9989799 + MTEa LTR MaLR 277 379 0 4 1649 297 341 61 36 chr6 139527397 139527499 -9989538 + B4A SINE B4 2 111 -181 4 1649 279 0 0 0 chr6 139527499 139527530 -9989507 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1649 297 341 61 36 chr6 139527530 139527707 -9989330 + B4A SINE B4 112 288 -4 4 1649 871 219 37 8 chr6 139528948 139529129 -9987908 + B3 SINE B2 9 192 -1 4 1649 681 287 49 11 chr6 139529280 139529518 -9987519 + B4 SINE B4 40 290 -2 4 1649 231 36 0 0 chr6 139529784 139529812 -9987225 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 1649 712 250 35 46 chr6 139529884 139530081 -9986956 + B4A SINE B4 11 205 -87 4 1649 568 345 22 6 chr6 139531190 139531368 -9985669 + B3A SINE B2 3 183 -15 4 1649 607 212 124 60 chr6 139531412 139531613 -9985424 - RMER12 LTR ERVK 0 1322 1109 4 1649 477 259 52 45 chr6 139531609 139531763 -9985274 - RMER12 LTR ERVK -128 1194 1040 4 1649 1032 60 22 22 chr6 139531885 139532251 -9984786 + (CA)n Simple_repeat Simple_repeat 1 366 0 5 1649 3518 177 27 75 chr6 139532266 139532487 -9984550 - RMER12 LTR ERVK -576 746 534 4 1649 4707 111 58 63 chr6 139532487 139533378 -9983659 - RMER17D LTR ERVK -2 887 1 5 1649 3518 177 27 75 chr6 139533378 139533940 -9983097 - RMER12 LTR ERVK -789 533 1 4 1649 458 274 147 26 chr6 139534195 139534386 -9982651 - B3 SINE B2 -2 214 1 5 1649 706 337 118 38 chr6 139534394 139535270 -9981767 + Charlie1a DNA MER1_type 471 1416 -39 5 1649 417 20 0 0 chr6 139536730 139536780 -9980257 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1649 313 222 72 27 chr6 139537427 139537538 -9979499 - LTR48 LTR ERV1 -632 155 40 5 1649 398 224 50 10 chr6 139539843 139539942 -9977095 + MER34 LTR ERV1 375 477 -65 5 1649 560 382 33 36 chr6 139541306 139541635 -9975402 - MLT1J-int LTR MaLR -628 759 432 5 1649 809 275 16 0 chr6 139542032 139542214 -9974823 - B3 SINE B2 -27 189 5 5 1649 1065 150 11 48 chr6 139542521 139542710 -9974327 - B2_Mm2 SINE B2 -11 184 3 5 1649 296 200 13 0 chr6 139544342 139544417 -9972620 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1649 281 155 33 33 chr6 139544419 139544479 -9972558 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 6 1649 564 233 0 0 chr6 139544484 139544630 -9972407 + (CA)n Simple_repeat Simple_repeat 2 147 0 6 1649 400 280 66 83 chr6 139545673 139545961 -9971076 - RMER12 LTR ERVK -268 1054 772 6 1649 310 303 37 56 chr6 139546828 139546989 -9970048 - HAL1-3A_ME LINE L1 -419 2439 2282 6 1649 447 166 19 58 chr6 139549050 139549204 -9967833 + GA-rich Low_complexity Low_complexity 6 153 0 6 1649 1367 99 13 31 chr6 139549708 139549937 -9967100 - Lx3_Mus LINE L1 -1 7008 6784 6 1649 213 115 0 65 chr6 139550184 139550277 -9966760 + (ATTTG)n Simple_repeat Simple_repeat 4 90 0 6 1649 55 76 0 0 chr6 139550733 139550851 -9966186 + AT_rich Low_complexity Low_complexity 1 118 0 6 1649 21 0 0 0 chr6 139551556 139551577 -9965460 + AT_rich Low_complexity Low_complexity 1 21 0 6 1649 285 29 0 0 chr6 139551678 139551712 -9965325 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1649 14428 169 60 31 chr6 139551940 139556618 -9960419 - Lx5 LINE L1 -260 6790 1569 7 1649 2315 156 50 27 chr6 139556629 139556683 -9960354 + RMER6A LTR ERVK 263 324 -432 7 1649 1002 120 17 0 chr6 139556683 139556858 -9960179 + (GAA)n Simple_repeat Simple_repeat 3 180 0 7 1649 2315 156 50 27 chr6 139556858 139557285 -9959752 + RMER6A LTR ERVK 325 754 -2 7 1649 936 126 7 27 chr6 139557292 139557439 -9959598 + B1_Mur4 SINE Alu 6 149 -1 7 1649 210 392 0 0 chr6 139558041 139558171 -9958866 + (TG)n Simple_repeat Simple_repeat 1 130 0 7 1649 377 287 68 23 chr6 139558177 139558309 -9958728 - B1_Mur2 SINE Alu -8 141 4 7 1649 468 0 0 0 chr6 139559109 139559161 -9957876 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1649 276 365 0 0 chr6 139560105 139560228 -9956809 + (CA)n Simple_repeat Simple_repeat 1 123 0 7 1649 471 291 75 0 chr6 139560705 139560839 -9956198 + B1F1 SINE Alu 6 149 0 7 1649 447 287 9 0 chr6 139561547 139561655 -9955382 + B1F SINE Alu 3 115 -34 8 1649 657 231 77 0 chr6 139562023 139562166 -9954871 - RSINE1 SINE B4 -10 155 2 8 1649 450 114 0 0 chr6 139562808 139562878 -9954159 + (CA)n Simple_repeat Simple_repeat 2 71 0 8 1649 504 0 0 0 chr6 139565549 139565605 -9951432 + (T)n Simple_repeat Simple_repeat 1 56 0 8 1649 1164 50 0 0 chr6 139565607 139565747 -9951290 - B1_Mus2 SINE Alu -7 140 1 8 1649 428 51 17 0 chr6 139565840 139565899 -9951138 + (TA)n Simple_repeat Simple_repeat 1 60 0 8 1649 849 260 15 0 chr6 139565926 139566130 -9950907 - B3 SINE B2 -9 207 1 8 1649 26 64 0 0 chr6 139566244 139566291 -9950746 + AT_rich Low_complexity Low_complexity 1 47 0 8 1649 705 304 98 38 chr6 139566406 139566724 -9950313 - MTE2b LTR MaLR -1 378 42 8 1649 396 0 0 0 chr6 139567229 139567273 -9949764 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 8 1649 740 239 16 21 chr6 139568246 139568434 -9948603 + B3A SINE B2 2 188 -10 9 1649 4754 53 5 2 chr6 139568590 139569175 -9947862 + LTRIS_Mus LTR ERV1 1 587 0 9 1649 2064 108 70 18 chr6 139569299 139569640 -9947397 - RLTR10D LTR ERVK 0 359 1 9 1649 481 286 42 26 chr6 139569916 139570106 -9946931 + B3A SINE B2 2 194 -4 9 1649 1212 192 9 0 chr6 139571722 139571946 -9945091 - RMER6C LTR ERVK -4 686 461 9 1649 708 341 54 5 chr6 139571995 139572216 -9944821 + B4A SINE B4 35 266 -26 9 1649 180 0 0 0 chr6 139572220 139572240 -9944797 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 1649 654 126 0 0 chr6 139572249 139572352 -9944685 + (GA)n Simple_repeat Simple_repeat 2 104 0 9 1649 1540 218 128 56 chr6 139572544 139573186 -9943851 + RMER6C LTR ERVK 1 688 -2 9 1649 440 357 105 25 chr6 139573274 139573636 -9943401 + L1MEc LINE L1 18 408 -5992 9 1649 368 405 38 0 chr6 139574692 139574902 -9942135 + L1ME2 LINE L1 5946 6163 -1 1 1649 213 39 0 0 chr6 139575918 139575944 -9941093 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1649 656 265 58 26 chr6 139576098 139576290 -9940747 + B3A SINE B2 19 215 -1 1 1649 591 280 15 51 chr6 139577131 139577327 -9939710 - ORR1E LTR MaLR -170 189 1 1 1649 716 181 87 6 chr6 139580113 139580381 -9936656 + RMER17B LTR ERVK 16 438 -520 1 1649 612 98 35 18 chr6 139580386 139580500 -9936537 + C-rich Low_complexity Low_complexity 4 119 0 1 1649 28 29 0 0 chr6 139581425 139581460 -9935577 + AT_rich Low_complexity Low_complexity 1 35 0 1 1649 556 328 5 35 chr6 139581462 139581661 -9935376 - B3A SINE B2 0 198 6 1 1649 180 0 0 0 chr6 139581683 139581703 -9935334 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 1 1649 729 301 38 0 chr6 139581704 139581890 -9935147 - B3 SINE B2 -20 196 4 1 1649 552 319 65 93 chr6 139582457 139582810 -9934227 + ORR1E LTR MaLR 13 355 -4 1 1649 246 114 28 14 chr6 139583031 139583102 -9933935 + (TTG)n Simple_repeat Simple_repeat 1 72 0 1 1649 784 50 10 0 chr6 139583102 139583144 -9933893 - B1_Mus2 SINE Alu -1 146 45 1 1649 308 202 54 87 chr6 139583144 139583203 -9933834 - RLTR25A LTR ERVK -521 582 521 1 1649 1230 151 30 0 chr6 139583203 139583402 -9933635 - B3 SINE B2 -10 206 2 1 1649 308 202 54 87 chr6 139583402 139583434 -9933603 - RLTR25A LTR ERVK -583 520 495 1 1649 45 87 0 0 chr6 139583611 139583726 -9933311 + AT_rich Low_complexity Low_complexity 1 115 0 1 1649 746 113 8 0 chr6 139583863 139583987 -9933050 + (CA)n Simple_repeat Simple_repeat 2 126 0 1 1649 699 272 41 117 chr6 139584093 139584563 -9932474 + L1_Rod LINE L1 5395 5803 -44 1 1649 27 0 0 0 chr6 139584618 139584645 -9932392 + AT_rich Low_complexity Low_complexity 1 27 0 1 1649 180 0 0 0 chr6 139585235 139585255 -9931782 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1 1649 678 327 26 4 chr6 139585327 139585600 -9931437 + B4A SINE B4 1 279 -13 1 1649 7663 114 25 18 chr6 139586383 139587725 -9929312 - L1_Mur1 LINE L1 -2383 3503 2153 1 1649 330 230 46 0 chr6 139587853 139587940 -9929097 - L1MA8 LINE L1 -32 6259 6169 1 1649 692 272 37 55 chr6 139588302 139588520 -9928517 + B3 SINE B2 1 214 -2 1 1649 1994 135 22 0 chr6 139588982 139589294 -9927743 - ORR1A2 LTR MaLR -8 319 1 1 1649 23 33 0 0 chr6 139589434 139589464 -9927573 + AT_rich Low_complexity Low_complexity 1 30 0 1 1649 767 227 42 37 chr6 139590446 139590661 -9926376 - B3 SINE B2 0 216 1 1 1649 506 252 9 0 chr6 139590726 139590833 -9926204 + ID_B1 SINE B4 116 223 -1 1 1649 3463 34 0 128 chr6 139590895 139591395 -9925642 - RLTR10C LTR ERVK 0 436 1 1 1650 1012 238 145 22 chr6 139593128 139593446 -9923591 - MTE2b LTR MaLR -22 357 1 1 1650 455 268 55 90 chr6 139593880 139594081 -9922956 - ORR1E LTR MaLR -3 356 163 1 1650 506 292 34 39 chr6 139594085 139594263 -9922774 - ORR1E LTR MaLR -168 191 15 1 1650 514 302 22 0 chr6 139595283 139595462 -9921575 - B3A SINE B2 -11 187 5 1 1650 1099 195 4 69 chr6 139595712 139595943 -9921094 + B3 SINE B2 1 216 0 1 1650 894 45 0 0 chr6 139596204 139596315 -9920722 + (GGAAA)n Simple_repeat Simple_repeat 4 114 0 1 1650 386 187 133 13 chr6 139596858 139597023 -9920014 - Lx7 LINE L1 0 7696 7382 1 1650 193 363 177 7 chr6 139597033 139597180 -9919857 - MIRb SINE MIR -91 177 6 1 1650 215 189 19 0 chr6 139597434 139597487 -9919550 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1650 438 108 0 0 chr6 139598770 139598835 -9918202 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1650 234 0 0 0 chr6 139598835 139598860 -9918177 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1650 743 268 69 6 chr6 139599268 139599441 -9917596 + B3A SINE B2 1 184 -14 1 1650 447 19 0 0 chr6 139599442 139599494 -9917543 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1650 801 280 125 4 chr6 139599895 139600175 -9916862 + MTD LTR MaLR 104 417 -2 1 1650 434 240 10 40 chr6 139601086 139601186 -9915851 + B1_Mur1 SINE Alu 52 148 -1 1 1650 1622 216 21 40 chr6 139601855 139602232 -9914805 - ORR1D1 LTR MaLR -4 370 1 1 1650 1136 289 114 0 chr6 139602262 139602612 -9914425 + MTD LTR MaLR 24 413 -6 1 1650 373 336 0 9 chr6 139603232 139603337 -9913700 - PB1D10 SINE Alu -4 113 10 1 1650 622 319 44 10 chr6 139603506 139603709 -9913328 + B3 SINE B2 1 210 -6 1 1650 315 0 0 0 chr6 139603991 139604026 -9913011 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1650 273 29 0 0 chr6 139604631 139604665 -9912372 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1650 733 114 8 8 chr6 139604670 139604794 -9912243 + (AGGGGG)n Simple_repeat Simple_repeat 5 128 0 1 1650 1130 117 0 6 chr6 139605068 139605248 -9911789 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 1650 312 131 14 28 chr6 139605248 139605319 -9911718 + GA-rich Low_complexity Low_complexity 2 71 0 1 1650 260 291 104 60 chr6 139606501 139606702 -9910335 - MIRb SINE MIR -58 210 1 1 1650 3705 150 37 12 chr6 139607372 139608041 -9908996 - RMER6A LTR ERVK -8 748 63 1 1650 27 0 0 0 chr6 139608067 139608094 -9908943 + AT_rich Low_complexity Low_complexity 1 27 0 1 1650 857 104 15 0 chr6 139608175 139608309 -9908728 - Lx LINE L1 -208 6446 6311 1 1650 323 133 0 91 chr6 139608311 139608377 -9908660 - RMER6A LTR ERVK -401 60 1 1 1650 637 318 67 44 chr6 139609415 139609685 -9907352 - MER21B LTR ERV1 -47 816 541 1 1650 629 259 193 22 chr6 139609902 139610177 -9906860 - MTE2b LTR MaLR 0 379 58 1 1650 466 259 17 10 chr6 139610390 139610507 -9906530 - MTE2a LTR MaLR -57 362 235 1 1650 269 277 167 49 chr6 139611130 139611274 -9905763 + RSINE1 SINE B4 5 165 0 1 1650 687 129 19 0 chr6 139611277 139611432 -9905605 + (CA)n Simple_repeat Simple_repeat 2 159 0 1 1650 4474 43 0 0 chr6 139661432 139661967 -9855070 + L1Md_T LINE L1 6048 6582 0 1 1650 201 74 0 0 chr6 139662079 139662106 -9854931 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1650 21 0 0 0 chr6 139663409 139663430 -9853607 + AT_rich Low_complexity Low_complexity 1 21 0 1 1650 204 200 0 0 chr6 139664730 139664785 -9852252 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1650 399 304 14 14 chr6 139664803 139664943 -9852094 - B1_Mur1 SINE Alu -8 141 2 1 1650 198 0 0 0 chr6 139665447 139665469 -9851568 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1650 430 348 9 1 chr6 139666159 139666302 -9850735 - B4A SINE B4 -68 224 80 1 1650 632 301 80 5 chr6 139666309 139666509 -9850528 - B3 SINE B2 -1 215 1 1 1650 720 35 0 0 chr6 139667645 139667732 -9849305 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 1 1650 396 324 31 75 chr6 139667774 139668056 -9848981 - MTD LTR MaLR -112 307 3 1 1650 27 29 0 0 chr6 139668393 139668427 -9848610 + AT_rich Low_complexity Low_complexity 1 34 0 1 1650 371 324 57 27 chr6 139669489 139669822 -9847215 - Lx8 LINE L1 -124 7349 7007 1 1650 1047 135 0 9 chr6 139669849 139670699 -9846338 + (TG)n Simple_repeat Simple_repeat 1 841 0 1 1650 29 0 0 0 chr6 139670720 139670749 -9846288 + AT_rich Low_complexity Low_complexity 1 29 0 1 1650 274 167 0 0 chr6 139670781 139670829 -9846208 - U5 snRNA snRNA -65 51 4 1 1650 306 258 15 15 chr6 139671008 139671142 -9845895 + (TA)n Simple_repeat Simple_repeat 2 135 0 1 1650 22 0 0 0 chr6 139671280 139671302 -9845735 + AT_rich Low_complexity Low_complexity 1 22 0 1 1650 242 173 13 0 chr6 139672281 139672356 -9844681 + (TCTCTG)n Simple_repeat Simple_repeat 4 79 0 1 1650 204 40 0 0 chr6 139672360 139672385 -9844652 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1650 462 269 0 0 chr6 139672393 139672501 -9844536 - PB1D9 SINE Alu -8 112 5 1 1650 384 309 87 7 chr6 139672502 139672652 -9844385 - Lx8 LINE L1 -132 7341 7180 1 1650 21 0 0 0 chr6 139672656 139672677 -9844360 + AT_rich Low_complexity Low_complexity 1 21 0 1 1650 3418 41 0 5 chr6 139672875 139673289 -9843748 - L1Md_F2 LINE L1 -12 6570 6159 1 1650 28 29 0 0 chr6 139673461 139673496 -9843541 + AT_rich Low_complexity Low_complexity 1 35 0 1 1650 309 355 34 20 chr6 139673590 139673794 -9843243 + L1M5 LINE L1 2554 2760 -3386 1 1650 600 14 0 0 chr6 139673858 139673927 -9843110 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1650 265 305 21 21 chr6 139674077 139674221 -9842816 + L1_Mur2 LINE L1 3500 3643 -2234 1 1650 819 308 151 31 chr6 139674217 139674502 -9842535 + L1_Mur3 LINE L1 3081 3382 -2498 1 1650 270 0 0 0 chr6 139674502 139674532 -9842505 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1650 819 308 151 31 chr6 139674532 139675817 -9841220 + L1_Mur3 LINE L1 3383 4838 -1042 1 1650 265 162 14 14 chr6 139675898 139675967 -9841070 + GA-rich Low_complexity Low_complexity 4 72 0 1 1650 402 302 27 52 chr6 139676311 139676710 -9840327 + L1MA6 LINE L1 3668 4104 -2039 1 1650 1135 42 0 0 chr6 139676719 139676861 -9840176 + B1_Mus1 SINE Alu 7 148 0 1 1650 185 0 40 0 chr6 139677037 139677062 -9839975 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 1 1650 407 347 29 16 chr6 139677174 139677417 -9839620 + L1MA6 LINE L1 4420 4665 -1478 1 1650 362 288 72 41 chr6 139677718 139678011 -9839026 + L1MA6 LINE L1 5721 6022 -278 1 1650 22 0 0 0 chr6 139678112 139678134 -9838903 + AT_rich Low_complexity Low_complexity 1 22 0 1 1650 249 197 0 0 chr6 139678470 139678536 -9838501 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1650 603 167 0 0 chr6 139679183 139679321 -9837716 + GA-rich Low_complexity Low_complexity 1 138 0 1 1650 993 106 0 0 chr6 139679330 139679510 -9837527 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1650 459 0 0 0 chr6 139679913 139679964 -9837073 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1 1650 405 256 274 0 chr6 139679975 139680143 -9836894 - B3 SINE B2 -2 214 1 1 1650 918 224 10 0 chr6 139680478 139680670 -9836367 - URR1B DNA MER1_type -2 223 30 2 1650 2968 150 58 39 chr6 139680668 139681238 -9835799 - RMER4B LTR ERVK -23 562 1 2 1650 270 241 0 36 chr6 139681238 139681279 -9835758 - URR1B DNA MER1_type -186 39 1 2 1650 613 315 14 57 chr6 139682547 139682759 -9834278 - B3 SINE B2 -13 203 1 2 1650 231 36 0 0 chr6 139684260 139684288 -9832749 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1650 399 293 50 57 chr6 139684423 139684582 -9832455 - RMER15 LTR ERVL -5 570 413 2 1650 431 303 51 6 chr6 139684970 139685126 -9831911 + RSINE1 SINE B4 3 165 0 2 1650 265 222 20 0 chr6 139686443 139686542 -9830495 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1650 189 241 81 81 chr6 139686678 139686764 -9830273 + L2c LINE L2 3297 3382 -5 2 1650 258 106 0 0 chr6 139689233 139689280 -9827757 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 1650 850 269 10 0 chr6 139689331 139689539 -9827498 - B3 SINE B2 -5 211 2 2 1650 1244 27 7 0 chr6 139689793 139689939 -9827098 - B1_Mus1 SINE Alu 0 148 2 2 1650 268 94 38 0 chr6 139691114 139691167 -9825870 + (TTTTTG)n Simple_repeat Simple_repeat 6 60 0 2 1650 387 269 210 6 chr6 139692603 139692779 -9824258 - MER20 DNA MER1_type -4 215 4 2 1650 675 323 36 14 chr6 139693339 139693562 -9823475 + B4 SINE B4 45 272 -20 2 1650 7342 74 15 15 chr6 139693622 139694605 -9822432 - RLTR13C1 LTR ERVK 0 983 1 2 1650 495 326 16 5 chr6 139695127 139695312 -9821725 - B4 SINE B4 0 292 106 2 1650 710 0 0 0 chr6 139697685 139697773 -9819264 + L1Md_A LINE L1 6495 6582 0 2 1650 183 145 72 0 chr6 139697886 139697969 -9819068 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 1650 27 0 0 0 chr6 139698325 139698352 -9818685 + AT_rich Low_complexity Low_complexity 1 27 0 2 1650 502 320 154 20 chr6 139698993 139699337 -9817700 - Lx8 LINE L1 -146 7327 6938 2 1650 424 235 0 89 chr6 139699345 139699457 -9817580 + B3A SINE B2 81 182 -16 2 1650 453 110 0 0 chr6 139699458 139699531 -9817506 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1650 703 121 37 25 chr6 139701266 139701427 -9815610 + (CAGA)n Simple_repeat Simple_repeat 2 164 0 2 1650 23 0 0 0 chr6 139701514 139701537 -9815500 + AT_rich Low_complexity Low_complexity 1 23 0 2 1650 522 282 39 12 chr6 139701858 139702113 -9814924 + L1ME2 LINE L1 5638 5899 -265 2 1650 383 235 23 12 chr6 139703665 139703751 -9813286 + PB1D7 SINE Alu 33 119 -1 2 1650 695 290 109 35 chr6 139703988 139704660 -9812377 + L1MB8 LINE L1 5255 5976 -202 2 1650 336 24 0 0 chr6 139704712 139704753 -9812284 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1650 561 310 0 21 chr6 139704857 139705002 -9812035 + RSINE1 SINE B4 3 144 -21 2 1650 215 125 25 0 chr6 139705039 139705079 -9811958 + (CATA)n Simple_repeat Simple_repeat 1 41 0 2 1650 197 289 45 78 chr6 139705603 139705757 -9811280 - MIR SINE MIR -8 254 106 2 1650 533 280 111 31 chr6 139705858 139706083 -9810954 - ORR1E LTR MaLR 0 359 117 2 1650 351 277 16 48 chr6 139706121 139706246 -9810791 + B3 SINE B2 16 136 -80 2 1650 421 231 103 29 chr6 139708615 139708776 -9808261 - L1MA7 LINE L1 0 6291 6121 2 1650 965 247 118 40 chr6 139708957 139709286 -9807751 - ORR1E LTR MaLR -4 355 1 2 1650 695 318 71 41 chr6 139710388 139710851 -9806186 + Charlie1b DNA MER1_type 10 486 -37 2 1650 570 351 64 49 chr6 139711339 139711684 -9805353 + ORR1E LTR MaLR 6 355 -4 2 1650 200 143 0 23 chr6 139713249 139713292 -9803745 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 2 1650 311 65 22 0 chr6 139713822 139713868 -9803169 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2 1650 327 239 0 53 chr6 139713920 139713995 -9803042 - B4A SINE B4 -6 286 216 2 1650 735 78 0 0 chr6 139713997 139714100 -9802937 + (TC)n Simple_repeat Simple_repeat 2 104 0 2 1650 547 307 25 69 chr6 139714108 139714311 -9802726 - B4A SINE B4 -43 249 56 2 1650 265 260 25 25 chr6 139715039 139715118 -9801919 - L2a LINE L2 -47 3379 3301 2 1650 186 103 0 0 chr6 139716646 139716675 -9800362 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1650 258 217 0 0 chr6 139716695 139716764 -9800273 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 1650 3004 59 51 0 chr6 139716786 139717177 -9799860 - RLTR10A LTR ERVK 0 411 1 2 1650 25 0 0 0 chr6 139717496 139717521 -9799516 + AT_rich Low_complexity Low_complexity 1 25 0 2 1650 411 21 0 0 chr6 139718043 139718091 -9798946 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1650 685 285 13 19 chr6 139718097 139718251 -9798786 - B4 SINE B4 -34 258 106 2 1650 750 222 7 0 chr6 139718250 139718394 -9798643 - B4 SINE B4 -141 151 7 2 1650 384 256 85 8 chr6 139718395 139718513 -9798524 - ID_B1 SINE B4 -14 210 84 2 1650 254 26 53 0 chr6 139719938 139719976 -9797061 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 2 1650 573 88 0 0 chr6 139719976 139720056 -9796981 + (GA)n Simple_repeat Simple_repeat 2 81 0 2 1650 219 170 0 0 chr6 139720057 139720104 -9796933 + (TATG)n Simple_repeat Simple_repeat 1 47 0 2 1650 262 86 52 0 chr6 139720835 139720893 -9796144 + (TTTTG)n Simple_repeat Simple_repeat 5 65 0 2 1650 380 295 26 42 chr6 139721592 139721857 -9795180 - L1M2 LINE L1 -2403 3740 3480 2 1651 225 265 0 0 chr6 139723016 139723084 -9793953 + A-rich Low_complexity Low_complexity 6 73 0 2 1651 485 209 0 6 chr6 139724670 139724829 -9792208 + CT-rich Low_complexity Low_complexity 2 159 0 2 1651 1382 58 0 0 chr6 139725001 139725173 -9791864 - L1Md_A LINE L1 0 6582 6411 2 1651 1005 175 0 49 chr6 139725670 139725874 -9791163 + B2_Mm2 SINE B2 1 194 -1 2 1651 29 0 0 0 chr6 139725941 139725970 -9791067 + AT_rich Low_complexity Low_complexity 1 29 0 2 1651 468 0 0 0 chr6 139727097 139727149 -9789888 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1651 1365 236 95 16 chr6 139727867 139728255 -9788782 + MTD LTR MaLR 1 419 0 2 1651 420 67 0 0 chr6 139728991 139729051 -9787986 + (TCTG)n Simple_repeat Simple_repeat 2 61 0 2 1651 538 131 20 0 chr6 139729051 139729150 -9787887 + C-rich Low_complexity Low_complexity 1 101 0 2 1651 690 332 152 21 chr6 139729184 139729421 -9787616 - B4A SINE B4 -23 269 2 2 1651 26 0 0 0 chr6 139729992 139730018 -9787019 + AT_rich Low_complexity Low_complexity 1 26 0 2 1651 536 89 19 19 chr6 139731373 139731476 -9785561 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 2 1651 25 0 0 0 chr6 139731477 139731502 -9785535 + AT_rich Low_complexity Low_complexity 1 25 0 2 1651 813 262 72 0 chr6 139731825 139732062 -9784975 + Lx6 LINE L1 7192 7445 -15 2 1651 2703 272 76 52 chr6 139732323 139733369 -9783668 - MTD-int LTR MaLR -57 1201 1 2 1651 2046 202 40 22 chr6 139733375 139733779 -9783258 - MTD LTR MaLR -8 411 1 2 1651 300 53 0 0 chr6 139734377 139734415 -9782622 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1651 226 368 45 81 chr6 139735427 139735625 -9781412 - MLT1L LTR MaLR -13 597 407 2 1651 658 310 71 0 chr6 139737665 139737862 -9779175 + B3 SINE B2 6 216 0 2 1651 459 0 0 0 chr6 139738102 139738153 -9778884 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1651 196 330 57 33 chr6 139738892 139739014 -9778023 + MIRc SINE MIR 40 164 -104 2 1651 211 235 20 0 chr6 139739111 139739162 -9777875 + B4 SINE B4 2 53 -239 2 1651 189 107 0 0 chr6 139739224 139739252 -9777785 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1651 280 105 12 50 chr6 139739254 139739334 -9777703 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1651 640 308 0 36 chr6 139739781 139739973 -9777064 - B3A SINE B2 -11 187 3 2 1651 223 117 0 118 chr6 139739995 139740063 -9776974 + T-rich Low_complexity Low_complexity 6 65 0 2 1651 210 235 20 0 chr6 139740255 139740306 -9776731 - B4 SINE B4 -239 53 2 2 1651 22 56 0 0 chr6 139740363 139740399 -9776638 + AT_rich Low_complexity Low_complexity 1 36 0 2 1651 216 0 0 0 chr6 139741022 139741046 -9775991 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1651 498 306 84 27 chr6 139741163 139741425 -9775612 + B4A SINE B4 2 278 -14 2 1651 450 0 0 0 chr6 139741486 139741536 -9775501 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1651 370 361 92 24 chr6 139742766 139743061 -9773976 + L1M5 LINE L1 4755 5069 -1077 2 1651 868 250 129 16 chr6 139743124 139743380 -9773657 + B4 SINE B4 1 285 -7 2 1651 708 12 0 0 chr6 139743380 139743461 -9773576 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 1651 352 269 97 0 chr6 139743684 139743777 -9773260 - PB1D10 SINE Alu 0 117 16 2 1651 369 0 0 0 chr6 139744801 139744842 -9772195 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1651 892 295 41 22 chr6 139744907 139745174 -9771863 - B4 SINE B4 -20 272 1 2 1651 690 293 56 125 chr6 139745377 139745749 -9771288 + RMER15 LTR ERVL 195 535 -40 2 1651 231 36 0 0 chr6 139745749 139745777 -9771260 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1651 690 293 56 125 chr6 139745777 139745813 -9771224 + RMER15 LTR ERVL 536 575 0 2 1651 271 286 35 63 chr6 139746342 139746484 -9770553 + Charlie7 DNA MER1_type 1495 1632 -980 2 1651 281 68 0 22 chr6 139746662 139746707 -9770330 + (CCCCG)n Simple_repeat Simple_repeat 4 47 0 2 1651 1066 278 101 94 chr6 139746833 139748073 -9768964 - L1MA8 LINE L1 -261 6030 4770 2 1651 223 264 83 0 chr6 139748748 139748820 -9768217 - L2a LINE L2 -8 3418 3341 2 1651 487 274 31 93 chr6 139749454 139749647 -9767390 - B3A SINE B2 -35 181 1 2 1651 331 307 114 53 chr6 139749742 139749969 -9767068 - MLT1E2 LTR MaLR -1 626 386 2 1651 23 0 0 0 chr6 139750256 139750279 -9766758 + AT_rich Low_complexity Low_complexity 1 23 0 3 1651 299 327 124 24 chr6 139750398 139750567 -9766470 - MLT1E2 LTR MaLR -150 215 30 2 1651 215 333 77 0 chr6 139750818 139750896 -9766141 - MIRb SINE MIR -154 114 31 3 1651 500 380 38 71 chr6 139750951 139751142 -9765895 + MLT1E3 LTR MaLR 151 329 -295 3 1651 1009 179 152 5 chr6 139751142 139751339 -9765698 + URR1A DNA MER1_type 1 226 0 3 1651 500 380 38 71 chr6 139751339 139751595 -9765442 + MLT1E3 LTR MaLR 330 583 -41 3 1651 238 243 12 108 chr6 139752629 139752712 -9764325 + B4 SINE B4 18 92 -200 3 1651 283 235 29 116 chr6 139752782 139752800 -9764237 + B1F1 SINE Alu 1 50 -70 3 1651 409 264 0 0 chr6 139752800 139752891 -9764146 + ID_B1 SINE B4 101 191 -33 3 1651 283 235 29 116 chr6 139752891 139752913 -9764124 + B1F1 SINE Alu 51 120 0 3 1651 3249 153 161 15 chr6 139753438 139754040 -9762997 - RMER6C LTR ERVK 0 690 1 3 1651 585 0 0 0 chr6 139755332 139755397 -9761640 + (TC)n Simple_repeat Simple_repeat 1 65 0 3 1651 450 0 0 0 chr6 139755397 139755446 -9761591 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1651 198 0 0 0 chr6 139756262 139756284 -9760753 + (TGGG)n Simple_repeat Simple_repeat 3 24 0 3 1651 717 269 40 30 chr6 139756351 139756550 -9760487 + B3 SINE B2 5 205 -11 3 1651 704 171 139 0 chr6 139757261 139757390 -9759647 - B1_Mus1 SINE Alu 0 148 2 3 1651 270 0 0 0 chr6 139757610 139757640 -9759397 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1651 1133 184 31 186 chr6 139757643 139757970 -9759067 - ORR1C1 LTR MaLR -31 347 72 3 1651 7635 77 9 3 chr6 139757970 139758987 -9758050 - L1_Mus4 LINE L1 -20 6616 5594 3 1651 373 216 11 11 chr6 139758990 139759079 -9757958 - ORR1C1 LTR MaLR -295 89 1 3 1651 187 371 0 16 chr6 139759702 139759765 -9757272 + L2b LINE L2 3297 3358 -17 3 1651 213 65 0 0 chr6 139760026 139760057 -9756980 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 3 1651 318 67 0 0 chr6 139761096 139761141 -9755896 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1651 326 169 11 0 chr6 139761466 139761555 -9755482 + CT-rich Low_complexity Low_complexity 1 90 0 3 1651 399 73 0 0 chr6 139761555 139761610 -9755427 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1651 1585 208 84 9 chr6 139761671 139761799 -9755238 - ORR1D1 LTR MaLR 0 374 233 3 1651 189 0 0 0 chr6 139761799 139761820 -9755217 + (CAGG)n Simple_repeat Simple_repeat 4 24 0 3 1651 1585 208 84 9 chr6 139761820 139762026 -9755011 - ORR1D1 LTR MaLR -142 232 15 3 1651 486 278 48 30 chr6 139762064 139762231 -9754806 - B4A SINE B4 -121 171 2 3 1651 23 0 0 0 chr6 139763719 139763742 -9753295 + AT_rich Low_complexity Low_complexity 1 23 0 3 1651 4847 205 76 17 chr6 139763742 139763890 -9753147 - Lx9 LINE L1 -1 7643 7475 3 1651 447 19 0 0 chr6 139763890 139763942 -9753095 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1651 4847 205 76 17 chr6 139763942 139764873 -9752164 - Lx9 LINE L1 -170 7474 6500 3 1651 3326 21 2 112 chr6 139765735 139766171 -9750866 + RLTR10 LTR ERVK 1 388 -2 3 1651 8294 47 1 3 chr6 139766203 139767193 -9749844 + RLTR10-int LTR ERVK 11 998 -989 3 1651 374 271 31 8 chr6 139767257 139767387 -9749650 + RLTR10-int LTR ERVK 1462 1594 -5987 3 1651 8791 22 2 1 chr6 139767469 139768463 -9748574 + RLTR10-int LTR ERVK 990 1984 -3 3 1651 3326 21 2 112 chr6 139768465 139768901 -9748136 + RLTR10 LTR ERVK 1 388 -2 3 1651 504 0 0 0 chr6 139771746 139771802 -9745235 + (CTG)n Simple_repeat Simple_repeat 1 56 0 3 1651 62 14 0 0 chr6 139772842 139772911 -9744126 + AT_rich Low_complexity Low_complexity 1 69 0 3 1651 3064 6 5 157 chr6 139774569 139775002 -9742035 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1651 29716 17 1 0 chr6 139775002 139778270 -9738767 - IAPEz-int LTR ERVK 0 6481 3210 3 1651 6772 93 141 49 chr6 139778269 139779464 -9737573 - IAPEz-int LTR ERVK -5168 1313 8 3 1651 3064 6 5 157 chr6 139779464 139779897 -9737140 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1651 455 0 18 0 chr6 139781076 139781131 -9735906 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1651 2704 165 13 54 chr6 139781134 139781673 -9735364 + RMER1B Other Other 541 1057 -9 3 1651 532 297 154 42 chr6 139781900 139782160 -9734877 - MLT1B LTR MaLR -26 364 76 3 1651 23 0 0 0 chr6 139782961 139782984 -9734053 + AT_rich Low_complexity Low_complexity 1 23 0 3 1651 189 294 174 12 chr6 139784216 139784302 -9732735 + MIR3 SINE MIR 85 184 -24 3 1651 1180 35 7 0 chr6 139786104 139786249 -9730788 - L1Md_F2 LINE L1 0 6582 6437 3 1651 723 241 0 21 chr6 139786518 139786662 -9730375 - B1_Mur1 SINE Alu -8 141 1 3 1651 25 65 0 0 chr6 139787192 139787238 -9729799 + AT_rich Low_complexity Low_complexity 1 46 0 3 1651 1040 284 67 32 chr6 139789978 139790291 -9726746 + MTE2b LTR MaLR 3 326 -53 3 1651 948 149 0 19 chr6 139790318 139790681 -9726356 + (TTGG)n Simple_repeat Simple_repeat 1 356 0 3 1651 219 88 0 0 chr6 139790707 139790741 -9726296 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 3 1651 617 139 11 17 chr6 139790767 139790942 -9726095 + (TTGG)n Simple_repeat Simple_repeat 2 175 0 3 1651 210 105 0 0 chr6 139790968 139791006 -9726031 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 3 1651 816 256 11 0 chr6 139791526 139791706 -9725331 + B3A SINE B2 1 182 -16 3 1651 263 173 0 58 chr6 139791738 139791824 -9725213 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1651 620 273 14 62 chr6 139792882 139793108 -9723929 - B3A SINE B2 0 216 1 3 1651 36 23 0 0 chr6 139793581 139793624 -9723413 + AT_rich Low_complexity Low_complexity 1 43 0 3 1651 1307 283 81 13 chr6 139794210 139794679 -9722358 - Lx8 LINE L1 0 7473 6973 3 1651 333 338 31 92 chr6 139794711 139794874 -9722163 - RSINE1 SINE B4 -2 163 11 3 1651 285 89 0 0 chr6 139797306 139797351 -9719686 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1651 188 111 0 27 chr6 139798398 139798435 -9718602 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 1651 234 42 0 78 chr6 139800094 139800145 -9716892 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 3 1651 826 246 127 42 chr6 139800283 139800614 -9716423 - ORR1E LTR MaLR 0 359 1 3 1651 238 259 149 22 chr6 139800616 139800750 -9716287 - Tigger7 DNA MER2_type -2286 205 55 3 1651 424 323 61 41 chr6 139800910 139801107 -9715930 - Tigger7 DNA MER2_type -2281 210 10 3 1651 414 0 0 0 chr6 139801745 139801791 -9715246 + (TAA)n Simple_repeat Simple_repeat 2 47 0 3 1651 30 0 0 0 chr6 139801864 139801894 -9715143 + AT_rich Low_complexity Low_complexity 1 30 0 3 1651 288 211 0 0 chr6 139801894 139801965 -9715072 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1651 873 191 2 0 chr6 139801978 139802435 -9714602 + (CA)n Simple_repeat Simple_repeat 1 458 0 3 1651 239 225 198 22 chr6 139802441 139802532 -9714505 - RSINE1 SINE B4 -55 110 4 3 1651 188 143 24 0 chr6 139802554 139802596 -9714441 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 3 1651 281 252 93 37 chr6 139802596 139802703 -9714334 - PB1D10 SINE Alu -1 116 4 3 1651 558 0 0 0 chr6 139802934 139802996 -9714041 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1651 256 345 17 50 chr6 139804258 139804377 -9712660 - Tigger5 DNA MER2_type -2251 155 41 3 1651 183 156 0 0 chr6 139804555 139804587 -9712450 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1651 532 264 25 25 chr6 139804594 139804757 -9712280 - RSINE1 SINE B4 0 165 3 3 1651 209 186 47 0 chr6 139805189 139805232 -9711805 + (TATG)n Simple_repeat Simple_repeat 4 48 0 3 1651 362 236 111 64 chr6 139805254 139805426 -9711611 - L1MA5A LINE L1 -359 5938 5759 3 1651 246 370 0 0 chr6 139806746 139806838 -9710199 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 1651 883 271 93 21 chr6 139806986 139807276 -9709761 + Lx8 LINE L1 7048 7358 -115 3 1651 213 224 0 0 chr6 139808513 139808571 -9708466 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1651 212 226 47 23 chr6 139808580 139808666 -9708371 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 3 1651 368 286 214 80 chr6 139809376 139809665 -9707372 + ORR1E LTR MaLR 1 328 -31 3 1651 198 91 0 0 chr6 139810717 139810750 -9706287 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1651 852 280 67 17 chr6 139810890 139811073 -9705964 + MTC LTR MaLR 7 189 -232 3 1651 369 0 0 0 chr6 139811073 139811114 -9705923 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1651 852 244 53 58 chr6 139811114 139811269 -9705768 + MTC LTR MaLR 190 405 -14 3 1651 608 296 24 10 chr6 139811269 139811474 -9705563 - Lx8 LINE L1 -296 7177 6970 3 1651 396 0 0 0 chr6 139812043 139812087 -9704950 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1651 547 192 12 0 chr6 139812087 139812254 -9704783 + (TG)n Simple_repeat Simple_repeat 1 169 0 3 1651 218 222 333 0 chr6 139812301 139812391 -9704646 + MIR SINE MIR 87 206 -56 3 1651 394 182 21 28 chr6 139812954 139813095 -9703942 + GA-rich Low_complexity Low_complexity 4 143 0 3 1651 380 180 0 32 chr6 139814663 139814726 -9702311 + RSINE1 SINE B4 83 143 -22 3 1651 239 304 14 55 chr6 139815273 139815346 -9701691 + RSINE1 SINE B4 4 73 -92 3 1651 226 288 0 0 chr6 139815354 139815413 -9701624 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1651 493 295 142 40 chr6 139815458 139815549 -9701488 + B4A SINE B4 9 97 -195 3 1651 447 35 0 0 chr6 139815549 139815606 -9701431 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1651 493 295 142 40 chr6 139815606 139815740 -9701297 + B4A SINE B4 98 257 -35 3 1651 2124 24 73 0 chr6 139815740 139816064 -9700973 - L1Md_A LINE L1 0 6582 6317 3 1651 191 200 0 24 chr6 139816118 139816159 -9700878 + L2b LINE L2 3318 3357 -18 3 1651 1200 98 0 0 chr6 139816190 139816363 -9700674 + (TC)n Simple_repeat Simple_repeat 1 173 0 3 1651 214 250 42 0 chr6 139816379 139816427 -9700610 + ID SINE ID 17 66 -158 3 1651 311 140 40 0 chr6 139816435 139816485 -9700552 + ORR1C2 LTR MaLR 1 52 -332 3 1651 378 0 0 0 chr6 139816492 139816534 -9700503 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1651 198 41 0 0 chr6 139816534 139816588 -9700449 + (CAGAGA)n Simple_repeat Simple_repeat 1 54 0 3 1651 1173 294 125 67 chr6 139816788 139818107 -9698930 - L1MD1 LINE L1 -20 6613 5163 3 1651 417 298 73 89 chr6 139818211 139818458 -9698579 - L1MD1 LINE L1 -6248 385 143 3 1651 628 295 9 76 chr6 139818982 139819206 -9697831 - ID_B1 SINE B4 -14 210 2 3 1651 1216 62 7 0 chr6 139820045 139820190 -9696847 + B1_Mus1 SINE Alu 3 148 0 3 1651 421 322 25 0 chr6 139820205 139820323 -9696714 - RSINE1 SINE B4 -44 121 1 3 1651 240 267 42 33 chr6 139820432 139820552 -9696485 - RMER12 LTR ERVK -466 856 736 3 1651 22 35 0 0 chr6 139821014 139821043 -9695994 + AT_rich Low_complexity Low_complexity 1 29 0 3 1651 921 266 73 56 chr6 139821205 139821547 -9695490 - ORR1E LTR MaLR -9 350 3 3 1651 231 355 80 38 chr6 139821792 139822029 -9695008 - MIR SINE MIR 0 262 16 3 1651 448 246 75 23 chr6 139822481 139822614 -9694423 - B1F SINE Alu -9 140 1 3 1651 810 216 5 72 chr6 139824404 139824599 -9692438 + B3A SINE B2 1 182 -16 4 1651 795 227 156 36 chr6 139825283 139825475 -9691562 + ID_B1 SINE B4 3 217 -7 4 1651 405 0 0 0 chr6 139827126 139827171 -9689866 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 4 1651 563 0 15 0 chr6 139827317 139827384 -9689653 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 4 1651 227 279 8 8 chr6 139827988 139828118 -9688919 + (TA)n Simple_repeat Simple_repeat 2 131 0 4 1651 486 46 0 0 chr6 139828838 139828903 -9688134 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1651 224 213 21 0 chr6 139828931 139828978 -9688059 + (TCTCTG)n Simple_repeat Simple_repeat 5 52 0 4 1651 582 238 24 0 chr6 139829020 139829146 -9687891 - B3A SINE B2 -69 129 1 4 1651 223 255 18 18 chr6 139829649 139829705 -9687332 + CT-rich Low_complexity Low_complexity 2 57 0 4 1651 241 349 51 8 chr6 139830073 139830192 -9686845 - MIRc SINE MIR -101 167 43 4 1651 195 283 163 35 chr6 139831550 139831722 -9685315 - MIR3 SINE MIR 0 208 15 4 1651 3527 33 8 0 chr6 139831862 139832255 -9684782 - MTA_Mm LTR MaLR 0 396 1 4 1651 198 0 0 0 chr6 139832453 139832475 -9684562 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4 1651 411 257 45 9 chr6 139832510 139832620 -9684417 + B1F SINE Alu 36 149 0 4 1651 317 317 79 21 chr6 139834087 139834277 -9682760 - MIR SINE MIR -2 260 60 4 1651 443 314 106 33 chr6 139835122 139835395 -9681642 - MER2 DNA MER2_type -52 293 1 4 1651 192 77 0 0 chr6 139835555 139835581 -9681456 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1651 240 216 117 39 chr6 139835778 139835855 -9681182 - MamRep137 DNA TcMar? -74 370 288 4 1651 2673 77 9 0 chr6 139837030 139837354 -9679683 + ORR1A2 LTR MaLR 1 327 0 4 1651 370 257 101 65 chr6 139838006 139838140 -9678897 + Lx9 LINE L1 7325 7465 -179 4 1651 381 75 0 0 chr6 139838140 139838193 -9678844 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1651 370 257 101 65 chr6 139838193 139838366 -9678671 + Lx9 LINE L1 7466 7642 -2 4 1651 268 255 45 73 chr6 139838455 139838479 -9678558 - LTR75 LTR ERVL -370 192 168 4 1651 378 0 0 0 chr6 139838479 139838521 -9678516 + (GGA)n Simple_repeat Simple_repeat 2 43 0 4 1651 268 255 45 73 chr6 139838521 139838606 -9678431 - LTR75 LTR ERVL -395 167 86 4 1651 230 262 47 70 chr6 139839275 139839361 -9677676 + PB1D10 SINE Alu 29 112 -5 4 1651 541 289 71 16 chr6 139839428 139839611 -9677426 - B3 SINE B2 -5 211 19 4 1651 548 322 22 17 chr6 139840330 139840411 -9676626 + B4A SINE B4 8 89 -203 4 1651 213 321 25 82 chr6 139840411 139840533 -9676504 + B1_Mur3 SINE Alu 3 117 -32 4 1651 228 256 61 0 chr6 139840559 139840641 -9676396 + (CATA)n Simple_repeat Simple_repeat 2 88 0 4 1651 275 319 43 0 chr6 139840886 139840955 -9676082 + PB1D7 SINE Alu 19 90 -30 4 1651 181 310 89 57 chr6 139841413 139841536 -9675501 + L4 LINE RTE 1077 1203 -826 4 1651 576 218 106 25 chr6 139841620 139841780 -9675257 + B3A SINE B2 2 174 -24 4 1651 255 61 0 0 chr6 139843812 139843845 -9673192 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 4 1651 779 187 0 6 chr6 139843856 139844028 -9673009 + CT-rich Low_complexity Low_complexity 3 173 0 4 1651 281 164 14 0 chr6 139844050 139844123 -9672914 + CT-rich Low_complexity Low_complexity 1 74 0 4 1651 306 0 0 0 chr6 139844124 139844158 -9672879 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1651 299 286 130 87 chr6 139844169 139844284 -9672753 - RSINE1 SINE B4 -12 153 34 4 1651 261 83 0 0 chr6 139844465 139844501 -9672536 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1651 288 0 0 0 chr6 139845200 139845232 -9671805 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1651 232 231 398 19 chr6 139847013 139847229 -9669808 + Charlie2b DNA MER1_type 2 299 -2483 4 1651 1495 87 16 0 chr6 139847315 139847500 -9669537 + B2_Mm2 SINE B2 2 189 -6 4 1651 23 0 0 0 chr6 139847864 139847887 -9669150 + AT_rich Low_complexity Low_complexity 1 23 0 4 1651 231 61 0 0 chr6 139848914 139848947 -9668090 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1651 2161 132 79 76 chr6 139849247 139849640 -9667397 + ORR1B1 LTR MaLR 1 394 0 4 1651 499 308 36 22 chr6 139849947 139850155 -9666882 - MLT1D LTR MaLR -267 238 19 4 1651 2351 183 22 133 chr6 139850303 139850926 -9666111 - RMER15 LTR ERVL -5 570 17 4 1651 369 0 0 0 chr6 139851109 139851150 -9665887 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1651 495 0 0 0 chr6 139851286 139851341 -9665696 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 4 1651 1217 51 0 0 chr6 139851341 139851478 -9665559 - B1_Mm SINE Alu -10 137 1 4 1651 392 280 10 29 chr6 139851587 139851690 -9665347 - PB1D9 SINE Alu -12 108 8 4 1651 304 298 8 50 chr6 139851682 139851802 -9665235 - LTR82A LTR ERVL -574 298 184 4 1651 8139 41 3 14 chr6 139852264 139853405 -9663632 - L1Md_F2 LINE L1 -1 6581 5458 4 1652 452 326 58 0 chr6 139853914 139854086 -9662951 + B3A SINE B2 1 182 -16 4 1652 767 232 91 80 chr6 139855053 139855317 -9661720 + B4A SINE B4 2 271 -21 4 1652 1242 95 0 0 chr6 139855317 139855496 -9661541 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1652 767 232 91 80 chr6 139855496 139855507 -9661530 + B4A SINE B4 272 280 -12 4 1652 1314 276 13 69 chr6 139855642 139856031 -9661006 - MTEa LTR MaLR -12 367 1 4 1652 26 82 0 0 chr6 139856224 139856285 -9660752 + AT_rich Low_complexity Low_complexity 1 61 0 4 1652 286 339 101 40 chr6 139856587 139856814 -9660223 - Lx8 LINE L1 -1 7472 7232 4 1652 191 204 19 0 chr6 139857230 139857284 -9659753 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 4 1652 189 0 0 0 chr6 139857819 139857840 -9659197 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1652 263 203 14 0 chr6 139858759 139858828 -9658209 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 1652 295 346 109 49 chr6 139859136 139859485 -9657552 - L2 LINE L2 -978 2441 2072 4 1652 273 57 0 0 chr6 139860193 139860228 -9656809 + (TTATA)n Simple_repeat Simple_repeat 5 39 0 4 1652 200 195 0 0 chr6 139860228 139860269 -9656768 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 4 1652 878 0 10 0 chr6 139860544 139860646 -9656391 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 4 1652 215 242 62 70 chr6 139860997 139861126 -9655911 - L2 LINE L2 -2828 591 464 4 1652 242 208 123 14 chr6 139861556 139861629 -9655408 - ID4_ SINE ID -1 82 2 4 1652 308 180 43 43 chr6 139861933 139862026 -9655011 + MER53 DNA hAT 16 108 -85 4 1652 229 273 38 38 chr6 139862285 139862365 -9654672 - MT2B LTR ERVL -328 273 194 4 1652 370 268 0 12 chr6 139862294 139862377 -9654660 - PB1D10 SINE Alu -11 106 25 4 1652 279 0 0 0 chr6 139862434 139862465 -9654572 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 4 1652 863 91 0 52 chr6 139863105 139863332 -9653705 + (GGA)n Simple_repeat Simple_repeat 1 215 0 4 1652 1267 72 0 11 chr6 139863332 139863514 -9653523 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1652 349 326 27 56 chr6 139864752 139865004 -9652033 - MLT1C LTR MaLR -8 459 132 4 1652 1796 205 22 11 chr6 139865016 139865376 -9651661 - ORR1D1 LTR MaLR -10 364 1 4 1652 309 294 26 44 chr6 139865381 139865495 -9651542 - MLT1C LTR MaLR -355 112 1 4 1652 1221 106 0 0 chr6 139866921 139867101 -9649936 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1652 486 309 18 0 chr6 139867415 139867525 -9649512 - B3A SINE B2 -85 113 2 4 1652 1279 245 129 29 chr6 139868738 139869117 -9647920 + MTD LTR MaLR 1 417 -2 4 1652 1627 139 8 8 chr6 139869753 139870021 -9647016 + L1_Mur2 LINE L1 5049 5316 -561 4 1652 3956 68 17 2 chr6 139870023 139870529 -9646508 - L1Md_F2 LINE L1 0 6582 6086 4 1652 6783 109 26 69 chr6 139870529 139872060 -9644977 + Lx LINE L1 5076 6518 -136 4 1652 276 30 0 0 chr6 139872060 139872093 -9644944 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 4 1652 6783 113 60 6 chr6 139872093 139872186 -9644851 + Lx LINE L1 6519 6653 -1 4 1652 357 318 62 17 chr6 139872324 139872503 -9644534 - ORR1E LTR MaLR -168 191 5 4 1652 324 359 46 10 chr6 139873697 139873894 -9643143 + L1M5 LINE L1 2181 2384 -3831 4 1652 199 239 56 14 chr6 139874999 139875071 -9641966 + L2a LINE L2 3092 3166 -260 4 1652 590 298 100 39 chr6 139876181 139876320 -9640717 + L1MC LINE L1 5302 5454 -2428 4 1652 252 0 0 0 chr6 139876320 139876348 -9640689 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 1652 590 298 100 39 chr6 139876348 139876700 -9640337 + L1MC LINE L1 5455 5823 -2059 4 1652 723 284 165 9 chr6 139877309 139877643 -9639394 - Lx8 LINE L1 -4 7469 7084 4 1652 24761 47 8 0 chr6 139878045 139881081 -9635956 + L1Md_F2 LINE L1 2528 5585 -298 4 1652 8854 30 2 11 chr6 139881082 139882087 -9634950 + L1Md_F2 LINE L1 5587 6582 0 4 1652 414 262 24 8 chr6 139883175 139883302 -9633735 + RSINE1 SINE B4 28 156 -9 4 1652 22 56 0 0 chr6 139883304 139883340 -9633697 + AT_rich Low_complexity Low_complexity 1 36 0 4 1652 583 324 20 0 chr6 139883715 139883863 -9633174 + B3A SINE B2 2 152 -46 4 1652 252 0 0 0 chr6 139883864 139883892 -9633145 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1652 369 17 0 49 chr6 139884026 139884087 -9632950 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 4 1652 1093 79 22 0 chr6 139884087 139884221 -9632816 - B1_Mm SINE Alu -4 143 7 4 1652 786 50 0 0 chr6 139885265 139885364 -9631673 + (TC)n Simple_repeat Simple_repeat 2 100 0 4 1652 297 0 0 0 chr6 139885364 139885396 -9631641 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1652 893 234 31 82 chr6 139885412 139885668 -9631369 - B4A SINE B4 -48 244 2 4 1652 415 252 35 62 chr6 139885668 139885812 -9631225 - L1M3e LINE L1 -5071 1959 1820 4 1652 21 0 0 0 chr6 139886396 139886417 -9630620 + AT_rich Low_complexity Low_complexity 1 21 0 4 1652 810 272 16 16 chr6 139886626 139886809 -9630228 + ID_B1 SINE B4 42 224 0 4 1652 599 351 44 17 chr6 139887027 139887320 -9629717 + MARNA DNA Mariner 90 390 -196 4 1652 467 229 96 37 chr6 139887514 139887650 -9629387 - B1F SINE Alu -1 148 5 4 1652 469 339 132 53 chr6 139887657 139888517 -9628520 + L2b LINE L2 2199 3128 -247 5 1652 1159 85 0 6 chr6 139888649 139888975 -9628062 + (TG)n Simple_repeat Simple_repeat 1 323 0 5 1652 1103 114 3 19 chr6 139889006 139889691 -9627346 + (TG)n Simple_repeat Simple_repeat 1 674 0 5 1652 487 335 23 40 chr6 139889695 139889762 -9627275 - B3A SINE B2 -16 182 118 5 1652 1235 79 6 0 chr6 139889762 139889939 -9627098 + (TG)n Simple_repeat Simple_repeat 2 179 0 5 1652 487 335 23 40 chr6 139889939 139890048 -9626989 - B3A SINE B2 -81 117 9 5 1652 21 0 0 0 chr6 139890269 139890290 -9626747 + AT_rich Low_complexity Low_complexity 1 21 0 5 1652 432 257 94 7 chr6 139891000 139891194 -9625843 - L1M2 LINE L1 -792 5354 5143 5 1652 691 231 49 0 chr6 139891379 139891522 -9625515 - B3 SINE B2 -65 151 2 5 1652 30 27 0 0 chr6 139891595 139891632 -9625405 + AT_rich Low_complexity Low_complexity 1 37 0 5 1652 710 298 18 0 chr6 139891696 139891864 -9625173 - B3A SINE B2 -24 174 4 5 1652 889 279 76 57 chr6 139891893 139892485 -9624552 - L1M2 LINE L1 -1280 4863 4261 5 1652 29 28 0 0 chr6 139893012 139893048 -9623989 + AT_rich Low_complexity Low_complexity 1 36 0 5 1652 743 251 20 25 chr6 139893193 139893389 -9623648 + RMER30 DNA MER1_type 2 196 -6 5 1652 301 339 93 23 chr6 139894296 139894468 -9622569 + L1MEf LINE L1 974 1157 -5043 5 1652 844 259 70 8 chr6 139894471 139894712 -9622325 + Lx6 LINE L1 7179 7434 -26 5 1652 315 311 24 24 chr6 139894718 139894843 -9622194 + L1MEf LINE L1 1136 1260 -4940 5 1652 360 274 130 0 chr6 139895164 139895347 -9621690 - L1M5 LINE L1 -3097 3049 2845 5 1652 213 258 29 57 chr6 139895643 139895713 -9621324 + ID_B1 SINE B4 80 147 -77 5 1652 481 355 19 15 chr6 139895713 139895982 -9621055 - L1MD LINE L1 -3347 2799 2530 5 1652 1005 285 26 4 chr6 139896214 139896482 -9620555 - B4A SINE B4 -18 274 1 5 1652 501 305 102 9 chr6 139897252 139897477 -9619560 - MER2 DNA MER2_type -64 281 36 5 1652 191 192 39 0 chr6 139897495 139897547 -9619490 + CT-rich Low_complexity Low_complexity 4 57 0 5 1652 460 229 114 27 chr6 139897617 139897800 -9619237 + B3A SINE B2 30 215 -1 5 1652 304 71 36 0 chr6 139897800 139897856 -9619181 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1652 732 293 6 6 chr6 139898695 139898860 -9618177 + RSINE1 SINE B4 1 165 0 5 1652 573 298 120 15 chr6 139899435 139899694 -9617343 - B4A SINE B4 -6 286 1 5 1652 22 0 0 0 chr6 139899810 139899832 -9617205 + AT_rich Low_complexity Low_complexity 1 22 0 5 1652 359 301 44 0 chr6 139899832 139899945 -9617092 - PB1D7 SINE Alu -2 118 1 5 1652 337 202 115 21 chr6 139900296 139900392 -9616645 - MTD LTR MaLR -16 403 299 5 1652 381 207 0 0 chr6 139900441 139900523 -9616514 + GA-rich Low_complexity Low_complexity 3 84 0 5 1652 736 281 45 6 chr6 139900538 139900717 -9616320 - MTD LTR MaLR -156 263 78 5 1652 318 289 8 32 chr6 139901386 139901511 -9615526 - ORR1D2 LTR MaLR -228 142 21 5 1652 497 294 66 16 chr6 139902576 139902800 -9614237 + B4A SINE B4 3 270 -22 5 1652 1234 248 44 23 chr6 139902979 139903322 -9613715 - ERVL-B4-int LTR ERVL -787 4927 4578 5 1652 288 278 175 12 chr6 139903438 139903609 -9613428 - ERVL-B4-int LTR ERVL -1329 4385 4187 5 1652 695 242 179 24 chr6 139903609 139903855 -9613182 - RMER15 LTR ERVL 0 575 292 5 1652 864 190 0 0 chr6 139904117 139904254 -9612783 + B1_Mur3 SINE Alu 1 137 -12 5 1652 420 71 0 0 chr6 139904254 139904310 -9612727 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 5 1652 447 68 0 0 chr6 139904319 139904378 -9612659 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 5 1652 1486 290 4 33 chr6 139904421 139904906 -9612131 - ERVL-B4-int LTR ERVL -1635 4079 3609 5 1652 303 191 0 0 chr6 139906041 139906104 -9610933 + T-rich Low_complexity Low_complexity 1 63 0 5 1652 183 184 0 0 chr6 139906401 139906439 -9610598 + T-rich Low_complexity Low_complexity 1 38 0 5 1652 228 257 29 0 chr6 139906979 139907049 -9609988 - PB1D10 SINE Alu -6 111 40 5 1652 213 128 0 60 chr6 139907539 139907589 -9609448 + A-rich Low_complexity Low_complexity 2 48 0 5 1652 239 236 79 122 chr6 139907891 139907902 -9609135 - MT2B2 LTR ERVL -291 293 260 5 1652 603 214 25 8 chr6 139907902 139908020 -9609017 - ID_B1 SINE B4 -23 201 82 5 1652 239 236 79 122 chr6 139908020 139908055 -9608982 - MT2B2 LTR ERVL -291 259 137 5 1652 493 306 191 0 chr6 139908208 139908381 -9608656 - Lx8 LINE L1 -155 7318 7113 5 1652 704 228 0 8 chr6 139908569 139908693 -9608344 - B1_Mur1 SINE Alu -1 148 26 5 1652 257 317 38 76 chr6 139908944 139909101 -9607936 - L1MD2 LINE L1 -36 6323 6173 5 1652 629 241 59 12 chr6 139909333 139909602 -9607435 - MTEa LTR MaLR 0 379 3 5 1652 962 235 35 0 chr6 139910068 139910268 -9606769 + B3 SINE B2 3 209 -7 5 1652 564 15 0 0 chr6 139910338 139910403 -9606634 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1652 414 134 0 0 chr6 139910441 139910508 -9606529 + (GGGA)n Simple_repeat Simple_repeat 4 70 0 5 1652 2014 127 95 3 chr6 139911041 139911366 -9605671 + RLTR15 LTR ERVK 1 355 -4 5 1652 3046 176 9 17 chr6 139911398 139911930 -9605107 - RLTR11A LTR ERVK 0 528 1 5 1652 355 331 63 51 chr6 139912180 139912355 -9604682 - LTR88b LTR Gypsy? -369 468 292 5 1652 480 18 0 0 chr6 139912903 139912960 -9604077 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1652 282 95 0 0 chr6 139912960 139913001 -9604036 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1652 535 176 0 162 chr6 139913108 139913250 -9603787 - PB1D9 SINE Alu -1 119 1 5 1652 232 167 0 0 chr6 139914056 139914104 -9602933 + T-rich Low_complexity Low_complexity 1 48 0 5 1652 243 274 0 0 chr6 139915645 139915696 -9601341 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 5 1652 1315 167 4 22 chr6 139916572 139916798 -9600239 - URR1A DNA MER1_type 0 226 5 5 1652 598 228 24 8 chr6 139917350 139917474 -9599563 - B1F2 SINE Alu 0 149 24 5 1652 232 302 208 31 chr6 139918275 139918785 -9598252 + L2b LINE L2 1831 2430 -989 5 1652 342 67 0 0 chr6 139918792 139918837 -9598200 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1652 530 331 70 60 chr6 139918855 139919539 -9597498 + L2b LINE L2 2613 3339 -87 5 1652 324 250 107 94 chr6 139920312 139920471 -9596566 + B3A SINE B2 27 187 -11 5 1652 575 306 67 50 chr6 139920498 139920859 -9596178 + L1M4 LINE L1 590 956 -5586 5 1652 190 172 68 11 chr6 139920954 139921042 -9595995 + GA-rich Low_complexity Low_complexity 3 95 0 5 1652 270 217 217 0 chr6 139921046 139921115 -9595922 + B1F1 SINE Alu 5 88 -61 5 1652 2037 47 8 0 chr6 139921127 139921361 -9595676 + L1_Mus1 LINE L1 6329 6564 -3 5 1652 4061 173 27 21 chr6 139921467 139922240 -9594797 + RLTR25B LTR ERVK 6 783 -245 5 1652 286 239 36 48 chr6 139922240 139922428 -9594609 + L1M4 LINE L1 2504 2689 -3957 5 1652 385 328 33 0 chr6 139922520 139922642 -9594395 + RSINE1 SINE B4 1 126 -39 5 1652 252 86 0 0 chr6 139922642 139922677 -9594360 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 5 1652 477 0 0 0 chr6 139922678 139922731 -9594306 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1652 1028 275 53 11 chr6 139922970 139923348 -9593689 + L1M4 LINE L1 5195 5588 -1056 5 1652 518 272 147 60 chr6 139923413 139923679 -9593358 + B4 SINE B4 3 291 -1 5 1652 513 71 0 0 chr6 139923935 139924005 -9593032 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1652 735 278 7 0 chr6 139924009 139924160 -9592877 - RSINE1 SINE B4 -12 153 2 5 1652 547 275 102 26 chr6 139924164 139924429 -9592608 + L1MB3 LINE L1 5845 6129 -54 5 1652 330 312 63 5 chr6 139924559 139924781 -9592256 + L1M4c LINE L1 2030 2264 -4120 5 1652 696 228 62 42 chr6 139924804 139925121 -9591916 + L1M4c LINE L1 2304 2628 -3754 5 1652 271 192 13 52 chr6 139925385 139925462 -9591575 + L1M4c LINE L1 2886 2959 -3423 5 1652 867 263 0 6 chr6 139925835 139926007 -9591030 - B3A SINE B2 -27 171 1 5 1652 336 265 40 10 chr6 139926915 139927014 -9590023 + MER3 DNA MER1_type 9 110 -99 5 1652 294 361 68 25 chr6 139927290 139927526 -9589511 + MLT1K LTR MaLR 337 582 -13 5 1652 392 331 35 24 chr6 139929110 139929201 -9587836 - MER5A DNA MER1_type 0 189 97 5 1652 530 265 66 7 chr6 139929201 139929338 -9587699 + B1F2 SINE Alu 2 146 -3 5 1652 392 331 35 24 chr6 139929338 139929416 -9587621 - MER5A DNA MER1_type -93 96 18 5 1652 293 355 24 0 chr6 139929446 139929570 -9587467 + MER5B DNA MER1_type 52 178 0 5 1652 813 316 105 50 chr6 139929655 139930092 -9586945 + RMER5 LTR ERV1 33 493 -41 5 1652 471 165 0 0 chr6 139930417 139930502 -9586535 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 1652 1424 204 265 23 chr6 139930994 139931436 -9585601 - RMER15 LTR ERVL 0 575 27 5 1652 255 288 101 20 chr6 139931577 139931726 -9585311 - L1M5 LINE L1 -316 5863 5703 5 1652 536 259 187 45 chr6 139932304 139932396 -9584641 - L1M5 LINE L1 -753 5691 5604 5 1652 1184 234 147 36 chr6 139932396 139932477 -9584560 - ORR1D2 LTR MaLR 0 370 272 5 1652 234 0 0 0 chr6 139932477 139932503 -9584534 + (GA)n Simple_repeat Simple_repeat 2 27 0 5 1652 1184 234 147 36 chr6 139932503 139932754 -9584283 - ORR1D2 LTR MaLR -99 271 2 5 1652 536 259 187 45 chr6 139932754 139933020 -9584017 - L1M5 LINE L1 -841 5603 5282 5 1652 1619 199 73 31 chr6 139933118 139933475 -9583562 - ORR1D1 LTR MaLR 0 374 3 5 1652 441 0 0 0 chr6 139933503 139933552 -9583485 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1652 315 0 0 0 chr6 139933805 139933840 -9583197 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1652 324 0 0 0 chr6 139933840 139933875 -9583162 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 1652 470 290 128 49 chr6 139934345 139934444 -9582593 - MER90a LTR ERV1 -6 608 494 5 1652 1393 143 27 27 chr6 139934444 139934667 -9582370 + URR1A DNA MER1_type 1 223 -3 5 1652 470 290 128 49 chr6 139934667 139934770 -9582267 - MER90a LTR ERV1 -121 493 390 5 1652 994 268 76 4 chr6 139934780 139935031 -9582006 + B4A SINE B4 2 270 -22 5 1652 432 0 0 0 chr6 139935032 139935080 -9581957 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1652 462 347 160 13 chr6 139935107 139935425 -9581612 - MER90a LTR ERV1 -228 386 22 5 1652 21 0 0 0 chr6 139935842 139935863 -9581174 + AT_rich Low_complexity Low_complexity 1 21 0 5 1652 462 294 87 93 chr6 139935914 139936203 -9580834 + B4A SINE B4 2 288 -4 5 1652 2357 169 46 40 chr6 139936730 139937230 -9579807 - RMER1C Other Other 0 1342 840 5 1652 23 54 0 0 chr6 139941359 139941396 -9575641 + AT_rich Low_complexity Low_complexity 1 37 0 5 1652 21 0 0 0 chr6 139942085 139942106 -9574931 + AT_rich Low_complexity Low_complexity 1 21 0 5 1652 2334 279 118 44 chr6 139942837 139943233 -9573804 + L1_Mur3 LINE L1 1211 1649 -4231 5 1652 324 0 0 0 chr6 139943233 139943269 -9573768 + (CAT)n Simple_repeat Simple_repeat 2 37 0 5 1652 2334 279 118 44 chr6 139943269 139944327 -9572710 + L1_Mur3 LINE L1 1650 2771 -3109 5 1652 487 332 22 64 chr6 139944323 139944395 -9572642 + L1_Mur3 LINE L1 4971 5041 -839 5 1652 234 0 0 0 chr6 139944395 139944421 -9572616 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1652 487 332 22 64 chr6 139944421 139944705 -9572332 + L1_Mur3 LINE L1 5042 5311 -569 5 1652 494 168 0 18 chr6 139945163 139945272 -9571765 + G-rich Low_complexity Low_complexity 4 110 0 6 1652 187 267 22 0 chr6 139945355 139945400 -9571637 - MIR SINE MIR -141 67 22 6 1652 898 212 92 156 chr6 139946026 139946304 -9570733 - MTE2a LTR MaLR 0 379 93 6 1652 1060 243 9 14 chr6 139946304 139946521 -9570516 + B3 SINE B2 1 216 0 6 1652 898 212 92 156 chr6 139946521 139946623 -9570414 - MTE2a LTR MaLR -287 92 21 6 1652 7562 101 54 11 chr6 139946623 139947700 -9569337 + Lx3B LINE L1 5851 6973 0 6 1652 898 212 92 156 chr6 139947700 139947721 -9569316 - MTE2a LTR MaLR -359 20 3 6 1652 246 329 93 35 chr6 139947763 139948075 -9568962 - L2 LINE L2 -704 2715 2386 6 1652 429 128 11 11 chr6 139948652 139948739 -9568298 + Lx3C LINE L1 6870 6956 -20 6 1652 297 75 0 0 chr6 139948743 139948783 -9568254 + (TTAG)n Simple_repeat Simple_repeat 2 41 0 6 1652 441 0 0 0 chr6 139949537 139949586 -9567451 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1652 1372 96 40 0 chr6 139949586 139949763 -9567274 - B2_Mm2 SINE B2 -11 184 1 6 1652 523 230 193 13 chr6 139949806 139949956 -9567081 + B3A SINE B2 5 181 -17 6 1652 25 0 0 0 chr6 139949989 139950014 -9567023 + AT_rich Low_complexity Low_complexity 1 25 0 6 1652 255 357 6 31 chr6 139950287 139950446 -9566591 + L1M6 LINE L1 1615 1769 -4727 6 1652 2249 157 22 11 chr6 139950928 139951289 -9565748 + ORR1B2 LTR MaLR 3 367 0 6 1652 21 0 0 0 chr6 139951333 139951354 -9565683 + AT_rich Low_complexity Low_complexity 1 21 0 6 1652 446 301 8 16 chr6 139951374 139951499 -9565538 - ID_B1 SINE B4 -7 217 94 6 1652 725 109 17 0 chr6 139953050 139953169 -9563868 - Lx2 LINE L1 0 6997 6877 6 1652 211 253 78 78 chr6 139953307 139953410 -9563627 - L3 LINE CR1 -304 4185 4083 6 1652 521 346 60 81 chr6 139953655 139954038 -9562999 + MTEa LTR MaLR 1 375 -4 6 1652 536 289 6 78 chr6 139954706 139954792 -9562245 + B4A SINE B4 6 91 -201 6 1652 2458 100 16 0 chr6 139954792 139955112 -9561925 - ORR1A2 LTR MaLR 0 327 3 6 1652 536 289 6 78 chr6 139955112 139955205 -9561832 + B4A SINE B4 92 172 -120 6 1652 822 18 91 0 chr6 139955292 139955457 -9561580 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1652 217 237 0 0 chr6 139955797 139955835 -9561202 + B1_Mus2 SINE Alu 7 44 -103 6 1652 1444 86 11 0 chr6 139956430 139956616 -9560421 - B2_Mm1t SINE B2 -5 188 1 6 1652 724 283 162 35 chr6 139957308 139957733 -9559304 + Lx8 LINE L1 6936 7414 -59 6 1652 235 227 39 39 chr6 139957827 139957905 -9559132 + Lx8 LINE L1 7396 7473 0 6 1652 384 284 77 53 chr6 139958037 139958245 -9558792 + L1_Mur3 LINE L1 3176 3388 -2492 6 1652 230 163 0 58 chr6 139960512 139960564 -9556473 + A-rich Low_complexity Low_complexity 2 50 0 6 1652 1297 257 73 31 chr6 139961482 139961836 -9555201 - MTE2a LTR MaLR -8 371 3 6 1652 21 0 0 0 chr6 139961860 139961881 -9555156 + AT_rich Low_complexity Low_complexity 1 21 0 6 1652 581 219 72 7 chr6 139962511 139962649 -9554388 + B1F SINE Alu 3 149 0 6 1652 367 275 0 0 chr6 139962659 139962728 -9554309 + ID4_ SINE ID 2 70 -13 6 1652 250 370 14 0 chr6 139962664 139962737 -9554300 + tRNA-Ala-GCG tRNA tRNA 1 74 -1 6 1652 348 24 0 0 chr6 139962923 139962964 -9554073 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1652 287 289 43 58 chr6 139962974 139963231 -9553806 - L1M2 LINE L1 -1743 4400 4148 6 1652 649 291 19 0 chr6 139963267 139963425 -9553612 - RSINE1 SINE B4 -2 163 3 6 1652 255 319 47 78 chr6 139966634 139966763 -9550274 + MER20 DNA MER1_type 64 188 -31 6 1652 1468 82 16 0 chr6 139967897 139968081 -9548956 - B2_Mm2 SINE B2 -7 188 2 6 1652 30 0 0 0 chr6 139968312 139968342 -9548695 + AT_rich Low_complexity Low_complexity 1 30 0 6 1652 814 301 5 20 chr6 139968364 139968561 -9548476 + ID_B1 SINE B4 3 196 -28 6 1652 338 194 0 46 chr6 139968568 139968633 -9548404 + ID_B1 SINE B4 141 202 -22 6 1652 537 155 0 0 chr6 139968655 139968739 -9548298 + ID_B1 SINE B4 141 224 0 6 1652 203 380 0 10 chr6 139969259 139969360 -9547677 + L2 LINE L2 2255 2354 -1065 6 1652 2397 89 0 6 chr6 139969837 139970165 -9546872 - L1_Mus4 LINE L1 0 6636 6311 6 1652 231 264 194 0 chr6 139970959 139971031 -9546006 + 4.5SRNA scRNA scRNA 6 91 -3 6 1652 728 320 0 6 chr6 139971034 139971213 -9545824 + B3A SINE B2 3 180 -18 6 1652 1532 232 21 27 chr6 139971256 139971592 -9545445 + Lx5 LINE L1 6717 7050 0 6 1652 211 139 23 0 chr6 139971592 139971635 -9545402 + A-rich Low_complexity Low_complexity 3 46 0 6 1652 875 234 11 37 chr6 139972005 139972196 -9544841 - B3 SINE B2 -30 186 1 6 1652 26 30 0 0 chr6 139972466 139972499 -9544538 + AT_rich Low_complexity Low_complexity 1 33 0 6 1652 607 259 112 25 chr6 139972585 139972786 -9544251 - B3A SINE B2 -8 208 6 6 1652 561 15 0 0 chr6 139972787 139972853 -9544184 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1652 1020 267 54 4 chr6 139974007 139974285 -9542752 + B4A SINE B4 1 292 0 6 1652 255 301 119 12 chr6 139974347 139974431 -9542606 + RSINE1 SINE B4 3 95 -70 6 1652 873 86 0 0 chr6 139974642 139974770 -9542267 + (CA)n Simple_repeat Simple_repeat 1 128 0 6 1652 589 340 11 39 chr6 139975549 139975809 -9541228 + Lx7 LINE L1 6823 7075 -621 6 1652 387 0 0 0 chr6 139976194 139976237 -9540800 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1652 314 277 17 26 chr6 139976242 139976357 -9540680 + (TATATG)n Simple_repeat Simple_repeat 4 117 0 6 1652 693 256 18 59 chr6 139976362 139976532 -9540505 - RSINE1 SINE B4 0 165 3 6 1652 704 199 82 7 chr6 139977618 139977765 -9539272 + RMER16 LTR ERVK 1 158 -375 6 1652 541 327 0 82 chr6 139977916 139977976 -9539061 - RSINE1 SINE B4 0 165 110 6 1652 1891 68 4 0 chr6 139977976 139978212 -9538825 + L1_Mus2 LINE L1 6329 6565 -1 6 1652 541 327 0 82 chr6 139978212 139978321 -9538716 - RSINE1 SINE B4 -56 109 10 6 1652 629 268 8 0 chr6 139978784 139978911 -9538126 + ID_B1 SINE B4 77 204 -20 6 1652 379 267 8 40 chr6 139978964 139979089 -9537948 + GA-rich Low_complexity Low_complexity 3 123 0 6 1652 230 213 132 13 chr6 139979884 139979960 -9537077 - MIRb SINE MIR -71 197 113 6 1652 723 333 21 21 chr6 139980126 139980417 -9536620 + B4A SINE B4 2 292 0 6 1652 348 295 228 8 chr6 139980760 139980883 -9536154 - RSINE1 SINE B4 -13 152 3 6 1652 189 0 0 0 chr6 139981387 139981408 -9535629 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1652 24 0 0 0 chr6 139981615 139981639 -9535398 + AT_rich Low_complexity Low_complexity 1 24 0 6 1652 795 234 0 14 chr6 139982196 139982343 -9534694 + RSINE1 SINE B4 3 147 -18 6 1652 441 66 0 0 chr6 139982344 139982405 -9534632 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1652 245 146 21 0 chr6 139982541 139982589 -9534448 + GA-rich Low_complexity Low_complexity 1 49 0 6 1652 359 302 88 44 chr6 139982589 139982912 -9534125 - L1MA9 LINE L1 -14 6154 5815 6 1652 501 231 0 0 chr6 139982917 139983038 -9533999 + T-rich Low_complexity Low_complexity 1 121 0 6 1652 598 308 113 36 chr6 139983041 139983914 -9533123 - L1MA9 LINE L1 -486 5805 4855 6 1652 277 290 28 18 chr6 139984437 139984546 -9532491 - L1MA9 LINE L1 -1259 4881 4772 6 206 1605 151 217 16 chr6 139984551 139984934 -9532103 + RLTR12B LTR ERVK 1 460 -68 6 1653 859 283 136 50 chr6 139984987 139985165 -9531872 - L1MA9 LINE L1 -1370 4773 4576 6 1653 461 17 17 0 chr6 139985165 139985223 -9531814 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1653 859 279 144 45 chr6 139985223 139985715 -9531322 - L1MA9 LINE L1 -1565 4575 4054 6 1653 244 132 14 29 chr6 139985855 139985925 -9531112 + (TTTG)n Simple_repeat Simple_repeat 1 69 0 6 1653 835 295 58 27 chr6 139986088 139986253 -9530784 - B4A SINE B4 -25 267 97 6 1653 2586 130 55 29 chr6 139986253 139986672 -9530365 - RLTR23 LTR ERV1 0 430 1 6 1653 835 295 58 27 chr6 139986672 139986764 -9530273 - B4A SINE B4 -196 96 2 6 1653 1023 283 133 23 chr6 139986810 139987207 -9529830 - L1MA9 LINE L1 -2245 3895 3458 6 1653 186 43 0 0 chr6 139987207 139987230 -9529807 + (TTA)n Simple_repeat Simple_repeat 1 23 0 6 1653 1023 283 133 23 chr6 139987230 139987450 -9529587 - L1MA9 LINE L1 -2683 3457 3210 6 1653 414 360 14 0 chr6 139987474 139987621 -9529416 - ID_B1 SINE B4 0 224 76 6 1653 666 251 27 59 chr6 139987889 139988075 -9528962 - B3A SINE B2 -18 180 1 6 1653 381 58 0 0 chr6 139989442 139989494 -9527543 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1653 428 237 119 34 chr6 139989534 139989652 -9527385 - RSINE1 SINE B4 -34 131 4 6 1653 285 245 0 0 chr6 139991389 139991528 -9525509 + (TG)n Simple_repeat Simple_repeat 2 140 0 6 1653 779 180 187 48 chr6 139991735 139991922 -9525115 + B3 SINE B2 4 216 0 6 1653 397 299 68 0 chr6 139992265 139992382 -9524655 + RSINE1 SINE B4 3 127 -38 6 1653 416 305 124 53 chr6 139992446 139992671 -9524366 - MLT1A0 LTR MaLR -25 340 100 6 1653 621 307 50 77 chr6 139992797 139993168 -9523869 + ORR1E LTR MaLR 2 362 -12 6 1653 643 258 99 10 chr6 139993627 139993819 -9523218 - B4A SINE B4 -82 210 2 6 1653 204 120 60 0 chr6 139993905 139993955 -9523082 + C-rich Low_complexity Low_complexity 4 56 0 6 1653 669 110 0 0 chr6 139994247 139994347 -9522690 + (GA)n Simple_repeat Simple_repeat 2 101 0 6 1653 807 282 83 88 chr6 139994525 139994898 -9522139 - MTE2b LTR MaLR -8 371 1 6 1653 346 275 14 2 chr6 139994938 139995026 -9522011 + PB1D10 SINE Alu 20 112 -37 6 1653 379 344 68 18 chr6 139995135 139995413 -9521624 - L1ME4a LINE L1 -196 5928 5637 6 1653 644 278 14 16 chr6 139995519 139995692 -9521345 + ID_B1 SINE B4 80 245 -47 6 1653 261 57 0 0 chr6 139995693 139995728 -9521309 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 6 1653 354 145 0 42 chr6 139997471 139997543 -9519494 + HAL1-3A_ME LINE L1 1959 2027 -831 6 1653 460 233 109 69 chr6 139998255 139998430 -9518607 - B3A SINE B2 -16 182 1 6 1653 591 289 38 76 chr6 139998666 139998928 -9518109 + B4A SINE B4 39 290 -2 6 1653 695 198 0 8 chr6 139998932 139999180 -9517857 + (CA)n Simple_repeat Simple_repeat 1 245 0 7 1653 320 256 77 0 chr6 139999198 139999276 -9517761 + HAL1-3A_ME LINE L1 1975 2058 -800 7 1653 1571 182 94 3 chr6 140000437 140000779 -9516258 - MTD LTR MaLR 0 419 47 1 1653 215 21 20 78 chr6 140000794 140000845 -9516192 + (CAAAAA)n Simple_repeat Simple_repeat 5 52 0 2 1653 3801 153 62 42 chr6 140001129 140001870 -9515167 - RMER6A LTR ERVK 0 756 1 3 1653 314 107 18 0 chr6 140001901 140001957 -9515080 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1653 302 231 0 44 chr6 140001980 140002048 -9514989 - B4A SINE B4 -11 281 217 5 1653 625 236 37 31 chr6 140002070 140002232 -9514805 - RSINE1 SINE B4 0 165 3 6 1653 228 339 0 124 chr6 140002449 140002612 -9514425 - L2b LINE L2 0 3387 3248 7 1653 306 106 0 0 chr6 140002820 140002867 -9514170 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1653 21 57 0 0 chr6 140003089 140003124 -9513913 + AT_rich Low_complexity Low_complexity 1 35 0 9 1653 258 250 38 152 chr6 140003351 140003483 -9513554 + MER92C LTR ERV1 1 117 -519 1 1653 775 29 10 10 chr6 140003500 140003603 -9513434 + (TTTC)n Simple_repeat Simple_repeat 3 105 0 1 1653 180 0 0 0 chr6 140004510 140004530 -9512507 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1653 225 83 0 0 chr6 140004850 140004886 -9512151 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 1 1653 807 239 51 5 chr6 140006518 140006732 -9510305 - RCHARR1 DNA MER1_type 0 974 751 1 1653 1247 299 45 51 chr6 140006735 140007204 -9509833 - RCHARR1 DNA MER1_type -508 466 1 1 1653 457 316 42 45 chr6 140007252 140007560 -9509477 + MER92C LTR ERV1 136 513 -41 1 1653 455 294 36 29 chr6 140008305 140008445 -9508592 - RSINE1 SINE B4 -23 142 2 1 1653 228 300 88 20 chr6 140009037 140009139 -9507898 + ID_B1 SINE B4 116 224 0 1 1653 445 187 3 27 chr6 140009522 140009642 -9507395 + PB1D7 SINE Alu 1 118 -2 1 1653 227 186 0 23 chr6 140009942 140009986 -9507051 + C-rich Low_complexity Low_complexity 4 46 0 1 1653 754 178 0 27 chr6 140010011 140010161 -9506876 - B1F2 SINE Alu 0 149 4 1 1653 215 133 22 0 chr6 140010536 140010581 -9506456 + (GGATG)n Simple_repeat Simple_repeat 1 46 0 2 1653 312 225 260 19 chr6 140010722 140010876 -9506161 + B4 SINE B4 102 292 0 2 1653 810 189 0 0 chr6 140010878 140011107 -9505930 + (CA)n Simple_repeat Simple_repeat 1 229 0 2 1653 266 291 87 16 chr6 140011248 140011433 -9505604 + LTR83 LTR ERVL 580 777 -3 2 1653 233 200 16 62 chr6 140012422 140012486 -9504551 + ORR1E LTR MaLR 89 149 -210 2 1653 888 7 35 28 chr6 140012488 140012633 -9504404 + (TTCTC)n Simple_repeat Simple_repeat 4 149 0 2 1653 372 207 0 0 chr6 140012635 140012751 -9504286 + CT-rich Low_complexity Low_complexity 2 117 0 2 1653 909 266 8 29 chr6 140013648 140013888 -9503149 + B4A SINE B4 56 290 -2 2 1653 510 61 0 0 chr6 140013896 140013962 -9503075 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1653 333 267 86 0 chr6 140015771 140015887 -9501150 - ID_B1 SINE B4 0 224 99 2 1653 608 270 53 21 chr6 140016926 140017115 -9499922 - B3A SINE B2 -3 195 1 3 1653 1558 142 14 28 chr6 140019052 140019341 -9497696 - RMER6C LTR ERVK 0 690 406 3 1653 564 201 88 69 chr6 140020136 140020296 -9496741 - RSINE1 SINE B4 0 165 3 3 1653 238 370 54 5 chr6 140020973 140021158 -9495879 - MIR SINE MIR -61 201 8 3 1653 4113 106 14 93 chr6 140021413 140022211 -9494826 + RMER17A LTR ERVK 1 735 -16 3 1653 215 275 188 0 chr6 140022323 140022403 -9494634 + L2a LINE L2 3298 3392 -34 3 1653 242 139 47 0 chr6 140022742 140022828 -9494209 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 1653 222 312 98 0 chr6 140023579 140023691 -9493346 + B4A SINE B4 77 199 -93 3 1653 579 157 29 0 chr6 140023609 140023711 -9493326 + B1F1 SINE Alu 25 129 -20 3 1653 480 111 0 0 chr6 140023714 140023786 -9493251 + (CAT)n Simple_repeat Simple_repeat 1 72 0 3 1653 601 262 95 24 chr6 140023791 140023959 -9493078 + B3A SINE B2 3 182 -16 4 1653 492 18 0 0 chr6 140024542 140024599 -9492438 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1653 697 205 234 0 chr6 140024746 140024917 -9492120 - B3 SINE B2 -3 213 3 4 1653 1092 226 31 71 chr6 140025509 140025890 -9491147 + ORR1E LTR MaLR 3 379 0 4 1653 548 252 0 15 chr6 140025890 140026027 -9491010 + ORR1E-int LTR MaLR 1 135 -1445 4 1653 272 336 76 0 chr6 140026241 140026360 -9490677 - MLT1H1 LTR MaLR -185 370 243 4 1653 257 190 0 108 chr6 140026511 140026576 -9490461 - RMER20B LTR ERVK -37 590 533 4 1653 744 244 65 18 chr6 140026579 140026808 -9490229 - RMER20B LTR ERVK -259 368 129 4 1653 2560 232 6 2 chr6 140026972 140027491 -9489546 - MERVK26-int LTR ERVK -2 6917 6397 4 1653 1579 270 44 60 chr6 140027483 140028070 -9488967 - MYSERV-int LTR ERVK -1764 4786 4209 4 1653 457 256 58 29 chr6 140028341 140028478 -9488559 - B3A SINE B2 -55 143 3 4 1653 732 300 149 12 chr6 140028739 140029147 -9487890 + MLT1C LTR MaLR 1 464 -3 4 1653 270 399 30 8 chr6 140029255 140029389 -9487648 - L4 LINE RTE -879 1150 1014 5 1653 1463 228 24 14 chr6 140029972 140030492 -9486545 + RMER1A Other Other 135 531 -499 5 1653 27709 131 15 16 chr6 140030522 140036455 -9480582 + L1_Mus4 LINE L1 700 6636 0 5 1653 1957 122 70 3 chr6 140036457 140036770 -9480267 + RMER1A Other Other 523 856 -174 5 1653 207 0 0 0 chr6 140036838 140036861 -9480176 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1653 562 321 109 24 chr6 140036938 140037395 -9479642 - L1M5 LINE L1 -1630 4516 4021 5 1653 191 267 0 32 chr6 140037636 140037698 -9479339 + L2a LINE L2 3109 3168 -258 5 1653 420 20 0 0 chr6 140037713 140037762 -9479275 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1653 400 228 115 82 chr6 140037845 140037890 -9479147 - B2_Mm2 SINE B2 -7 188 133 5 1653 504 0 0 0 chr6 140037890 140037946 -9479091 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1653 423 0 0 0 chr6 140037946 140037992 -9479045 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1653 435 228 115 82 chr6 140037992 140038127 -9478910 - B3A SINE B2 -54 144 1 5 1653 903 248 76 38 chr6 140038481 140038745 -9478292 + B4A SINE B4 2 275 -17 6 1653 1340 236 86 3 chr6 140039330 140039666 -9477371 + ORR1D2 LTR MaLR 2 365 -5 6 1653 449 173 0 0 chr6 140040151 140040232 -9476805 + RLTR23 LTR ERV1 8 88 -342 6 1653 555 316 48 57 chr6 140040337 140040669 -9476368 + RLTR23 LTR ERV1 102 430 0 6 1653 389 281 35 9 chr6 140040860 140040975 -9476062 + PB1D7 SINE Alu 1 118 -2 6 1653 1270 257 35 38 chr6 140041589 140041961 -9475076 - MTE2b LTR MaLR -5 374 4 6 1653 253 279 0 48 chr6 140042140 140042223 -9474814 + ID4_ SINE ID 2 80 -3 6 1653 697 175 0 24 chr6 140042232 140042355 -9474682 + PB1D9 SINE Alu 1 120 0 6 1653 453 233 0 0 chr6 140042360 140042476 -9474561 + GA-rich Low_complexity Low_complexity 6 121 0 6 1653 492 99 0 0 chr6 140042543 140042614 -9474423 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1653 419 300 128 64 chr6 140044107 140044435 -9472602 + ORR1E LTR MaLR 1 349 -10 6 1653 325 254 18 0 chr6 140044563 140044673 -9472364 + MER46C DNA MER2_type 83 194 -144 7 1653 360 314 0 0 chr6 140044786 140044888 -9472149 + PB1D7 SINE Alu 1 102 -18 7 1653 290 172 69 0 chr6 140044905 140044963 -9472074 + ID4_ SINE ID 12 73 -10 7 1653 374 294 16 0 chr6 140044959 140045085 -9471952 + ID_B1 SINE B4 96 223 -1 7 1653 392 274 143 53 chr6 140046823 140047077 -9469960 + B4A SINE B4 3 282 -10 7 1653 408 40 0 0 chr6 140047077 140047127 -9469910 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1653 392 274 143 53 chr6 140047127 140047138 -9469899 + B4A SINE B4 283 292 0 7 1653 23 33 0 0 chr6 140047238 140047268 -9469769 + AT_rich Low_complexity Low_complexity 1 30 0 7 1653 1170 104 0 0 chr6 140047268 140047752 -9469285 + (TG)n Simple_repeat Simple_repeat 1 484 0 7 1653 565 231 61 8 chr6 140047756 140047887 -9469150 - RSINE1 SINE B4 -20 145 8 7 1653 348 306 98 17 chr6 140049173 140049346 -9467691 - MLT1H LTR MaLR -16 533 347 7 1653 621 317 0 37 chr6 140050208 140050395 -9466642 + B3A SINE B2 3 182 -16 8 1653 971 278 36 69 chr6 140050423 140051102 -9465935 - RLTR18B LTR ERVK 0 512 1 8 1653 414 0 0 0 chr6 140052195 140052241 -9464796 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 1653 207 232 0 0 chr6 140053377 140053433 -9463604 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1653 564 267 66 33 chr6 140053494 140053738 -9463299 - B4A SINE B4 -40 252 1 8 1653 546 338 49 18 chr6 140054077 140054300 -9462737 + LTR16A LTR ERVL 60 289 -162 8 1653 931 80 0 14 chr6 140054466 140054606 -9462431 + B1_Mm SINE Alu 10 147 0 8 1653 784 148 13 7 chr6 140054606 140054756 -9462281 + A-rich Low_complexity Low_complexity 1 151 0 8 1653 242 220 0 0 chr6 140055255 140055305 -9461732 + GA-rich Low_complexity Low_complexity 3 52 0 8 1653 533 325 32 36 chr6 140056728 140056990 -9460047 + B4A SINE B4 15 280 -12 8 1653 849 96 11 22 chr6 140056990 140057172 -9459865 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1653 533 325 32 36 chr6 140057172 140057187 -9459850 + B4A SINE B4 281 291 -1 8 1653 460 293 103 2 chr6 140057877 140058043 -9458994 + B4A SINE B4 56 237 -55 9 1653 760 200 194 0 chr6 140058043 140058223 -9458814 + B3 SINE B2 1 215 -1 9 1653 448 307 96 30 chr6 140058223 140058254 -9458783 + B4 SINE B4 235 266 -26 9 1653 359 265 31 135 chr6 140058256 140058448 -9458589 + B3A SINE B2 26 197 -1 9 1653 261 0 0 0 chr6 140058725 140058754 -9458283 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1653 180 0 0 0 chr6 140058833 140058853 -9458184 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1653 279 0 0 0 chr6 140058853 140058883 -9458154 + (GA)n Simple_repeat Simple_repeat 1 31 0 9 1653 419 178 0 91 chr6 140058891 140059089 -9457948 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1653 583 331 7 0 chr6 140059385 140059536 -9457501 + RSINE1 SINE B4 14 165 0 9 1653 228 356 149 0 chr6 140060256 140060343 -9456694 + B4 SINE B4 182 281 -11 9 1653 294 29 0 0 chr6 140060378 140060413 -9456624 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1653 336 102 0 0 chr6 140060413 140060461 -9456576 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1653 647 336 42 0 chr6 140060562 140060776 -9456261 - MamSINE1 SINE tRNA -57 233 11 1 1653 189 0 0 0 chr6 140061704 140061725 -9455312 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1653 621 231 61 49 chr6 140061787 140061951 -9455086 + B3A SINE B2 15 180 -18 1 1653 186 189 0 0 chr6 140061957 140061994 -9455043 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1653 241 240 42 152 chr6 140062026 140062144 -9454893 + B3 SINE B2 99 203 -13 1 1653 1307 264 94 2 chr6 140062179 140062646 -9454391 - L1M3 LINE L1 -3349 2791 2282 1 1653 577 261 109 6 chr6 140062646 140062865 -9454172 - ORR1E LTR MaLR 0 374 148 1 1653 530 181 0 7 chr6 140062865 140063010 -9454027 + G-rich Low_complexity Low_complexity 6 149 0 1 1653 654 167 0 0 chr6 140062984 140063164 -9453873 + GA-rich Low_complexity Low_complexity 1 180 0 1 1653 2299 82 193 0 chr6 140063410 140063762 -9453275 + BGLII LTR ERVK 1 420 -1 1 1653 966 169 0 0 chr6 140064030 140064178 -9452859 + B1_Mus1 SINE Alu 1 148 0 1 1653 452 86 0 14 chr6 140064750 140064821 -9452216 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1653 713 265 0 0 chr6 140064828 140064975 -9452062 - B3A SINE B2 -51 147 1 1 1653 679 284 20 0 chr6 140065040 140065188 -9451849 - RSINE1 SINE B4 -13 152 2 1 1653 2927 39 3 67 chr6 140065463 140065853 -9451184 + RLTR10B2 LTR ERVK 1 365 0 1 1653 656 272 83 100 chr6 140067480 140067950 -9449087 - LTR37B LTR ERV1 0 468 7 1 1653 189 107 0 0 chr6 140068036 140068064 -9448973 + (TGG)n Simple_repeat Simple_repeat 1 28 0 1 1653 287 289 0 12 chr6 140068435 140068519 -9448518 - ID4 SINE ID 0 83 1 1 1653 321 297 45 0 chr6 140068639 140068750 -9448287 + PB1D7 SINE Alu 4 119 -1 1 1653 226 223 73 16 chr6 140068997 140069120 -9447917 + (CATATA)n Simple_repeat Simple_repeat 2 131 0 1 1653 362 341 29 6 chr6 140069713 140069884 -9447153 + L3 LINE CR1 3559 3733 -756 1 1653 336 350 110 28 chr6 140070187 140070369 -9446668 - B3A SINE B2 -1 197 1 1 1653 202 29 0 54 chr6 140070418 140070455 -9446582 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 1 1653 1255 34 0 0 chr6 140070456 140070603 -9446434 - B1_Mus1 SINE Alu 0 148 2 1 1653 441 0 0 0 chr6 140070651 140070700 -9446337 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1653 627 261 25 6 chr6 140070709 140070867 -9446170 - B3A SINE B2 -37 161 1 1 1653 690 280 0 0 chr6 140071210 140071367 -9445670 + B3A SINE B2 1 157 -41 1 1653 216 67 0 0 chr6 140071374 140071404 -9445633 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1653 1139 89 0 0 chr6 140072487 140072633 -9444404 - B1_Mus1 SINE Alu -2 146 1 1 1653 924 300 59 32 chr6 140072642 140072983 -9444054 - ORR1E LTR MaLR -6 353 4 1 1653 587 238 35 30 chr6 140073285 140073454 -9443583 - B3 SINE B2 -6 210 41 1 1653 258 117 0 118 chr6 140073868 140073936 -9443101 - B3A SINE B2 -138 60 1 1 1653 828 57 0 0 chr6 140074454 140074560 -9442477 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 1 1653 228 108 0 0 chr6 140074565 140074602 -9442435 - PB1D9 SINE Alu 0 120 84 1 1653 1540 143 148 10 chr6 140074668 140074978 -9442059 + ORR1B2 LTR MaLR 7 359 -8 1 1653 555 175 0 0 chr6 140074983 140075080 -9441957 + B1_Mur4 SINE Alu 31 127 -23 1 1653 1028 130 0 7 chr6 140075663 140075810 -9441227 + B1_Mus1 SINE Alu 3 148 0 1 1653 767 182 13 0 chr6 140075823 140075982 -9441055 + GA-rich Low_complexity Low_complexity 3 163 0 1 1653 597 295 94 16 chr6 140076344 140076589 -9440448 + L1ME1 LINE L1 5874 6137 -42 1 1653 393 272 54 39 chr6 140076590 140076720 -9440317 + B1F SINE Alu 17 148 -1 1 1653 318 253 13 0 chr6 140076746 140076821 -9440216 + ID4 SINE ID 2 77 -6 1 1653 2748 146 18 11 chr6 140076902 140077195 -9439842 + RMER6B LTR ERVK 1 295 -166 1 1653 191 61 0 29 chr6 140077195 140077229 -9439808 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1653 2748 146 18 11 chr6 140077229 140077393 -9439644 + RMER6B LTR ERVK 296 461 0 1 1653 33 0 0 0 chr6 140077804 140077837 -9439200 + AT_rich Low_complexity Low_complexity 1 33 0 1 1653 416 311 22 22 chr6 140077972 140078110 -9438927 + B1F SINE Alu 5 142 -7 1 1653 325 289 44 52 chr6 140078252 140078387 -9438650 + MTD LTR MaLR 13 146 -273 1 1653 1962 172 23 71 chr6 140078487 140078881 -9438156 + ORR1C1 LTR MaLR 1 375 -3 1 1653 366 234 45 38 chr6 140079323 140079456 -9437581 + ID_B1 SINE B4 91 224 0 1 1653 754 281 6 0 chr6 140079923 140080101 -9436936 + B3A SINE B2 2 180 -18 1 1653 325 273 213 8 chr6 140081236 140081358 -9435679 - B4A SINE B4 -2 290 144 1 1653 656 322 0 0 chr6 140081370 140081547 -9435490 - B3 SINE B2 -39 177 1 1 1653 547 272 127 94 chr6 140081638 140081914 -9435123 - B4A SINE B4 -2 290 6 1 1653 542 54 14 0 chr6 140082581 140082655 -9434382 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 1 1653 239 305 119 57 chr6 140083049 140083226 -9433811 - ORR1E LTR MaLR -121 238 51 1 1653 205 250 36 36 chr6 140083687 140083799 -9433238 + (TAGA)n Simple_repeat Simple_repeat 1 112 0 1 1653 202 143 24 0 chr6 140083941 140083983 -9433054 + T-rich Low_complexity Low_complexity 1 43 0 1 1653 722 201 41 20 chr6 140083985 140084132 -9432905 - B1_Mur4 SINE Alu 0 150 1 1 1653 667 215 129 0 chr6 140084203 140084366 -9432671 - B3 SINE B2 -30 186 3 1 1653 689 269 14 23 chr6 140084463 140084680 -9432357 - RMER15 LTR ERVL -16 559 345 1 1653 3376 33 5 2 chr6 140084829 140085224 -9431813 + MTA_Mm LTR MaLR 1 396 0 1 1653 213 200 13 26 chr6 140085633 140085710 -9431327 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 1 1653 387 260 193 60 chr6 140086076 140086408 -9430629 - RMER5 LTR ERV1 -158 376 1 1 1653 270 393 66 24 chr6 140086916 140087127 -9429910 - MLT1J LTR MaLR -113 399 180 1 1653 2311 158 157 104 chr6 140087138 140087716 -9429321 + RMER19C LTR ERVK 3 611 0 1 1653 216 86 0 0 chr6 140087825 140087860 -9429177 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1653 1194 286 73 62 chr6 140087897 140088401 -9428636 - Lx9 LINE L1 -176 7468 6959 1 1653 245 336 90 14 chr6 140088592 140088737 -9428300 - MLT1J LTR MaLR -350 162 7 1 1653 272 329 0 0 chr6 140089391 140089464 -9427573 + Lx8 LINE L1 7232 7304 -169 1 1653 1459 248 13 3 chr6 140089956 140090272 -9426765 - Lx5 LINE L1 0 7050 6732 1 1653 360 284 59 55 chr6 140090416 140090530 -9426507 + MER34A LTR ERV1 27 143 -428 1 1653 4301 19 0 10 chr6 140090530 140091017 -9426020 + LTRIS_Mm LTR ERV1 1 482 0 1 1653 198 0 0 0 chr6 140091017 140091039 -9425998 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1653 600 14 0 0 chr6 140091039 140091107 -9425930 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 1653 360 284 59 55 chr6 140091107 140091210 -9425827 + MER34A LTR ERV1 144 245 -326 1 1653 360 0 0 0 chr6 140091793 140091833 -9425204 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1653 506 244 61 8 chr6 140091847 140091979 -9425058 + B1_Mur1 SINE Alu 3 141 -8 1 1653 609 174 58 0 chr6 140092745 140092866 -9424171 + B1_Mur2 SINE Alu 3 130 -19 1 1653 309 26 0 0 chr6 140092868 140092906 -9424131 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1653 269 286 25 118 chr6 140093260 140093294 -9423743 - B4A SINE B4 0 292 268 1 1653 414 0 0 0 chr6 140093294 140093340 -9423697 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1653 269 286 25 118 chr6 140093340 140093424 -9423613 - B4A SINE B4 -25 267 185 1 1653 2624 81 25 3 chr6 140093671 140094031 -9423006 + L1Md_F2 LINE L1 6215 6582 0 1 1653 916 284 34 46 chr6 140094993 140095410 -9421627 - BGLII_B LTR ERVK -29 412 1 1 1653 604 298 40 12 chr6 140095410 140095576 -9421461 + ID_B1 SINE B4 44 214 -10 1 1653 272 232 36 100 chr6 140095578 140095606 -9421431 + ID_B1 SINE B4 121 146 -78 1 1653 375 113 0 0 chr6 140095606 140095677 -9421360 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 1 1653 272 232 36 100 chr6 140095677 140095758 -9421279 + ID_B1 SINE B4 147 223 -1 1 1653 1077 223 0 0 chr6 140097468 140097683 -9419354 - B3 SINE B2 0 216 2 1 1653 222 231 96 0 chr6 140098057 140098109 -9418928 + RSINE1 SINE B4 8 64 -101 1 1653 785 95 48 0 chr6 140098208 140098376 -9418661 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 1 1653 225 0 0 0 chr6 140098376 140098401 -9418636 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1653 651 153 27 12 chr6 140098403 140098664 -9418373 + (TAGA)n Simple_repeat Simple_repeat 1 265 0 1 1653 315 149 0 0 chr6 140099874 140099948 -9417089 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1653 318 98 0 0 chr6 140099947 140099998 -9417039 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1653 319 47 0 0 chr6 140100008 140100051 -9416986 + HAL1-3A_ME LINE L1 1976 2018 -840 1 1653 523 343 69 80 chr6 140102665 140102902 -9414135 + ORR1E LTR MaLR 4 235 -124 1 1653 234 0 0 0 chr6 140102902 140102928 -9414109 + (CACCC)n Simple_repeat Simple_repeat 1 26 0 1 1653 523 343 69 80 chr6 140102928 140103039 -9413998 + ORR1E LTR MaLR 236 348 -11 1 1653 279 0 0 0 chr6 140103226 140103257 -9413780 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1653 198 103 0 0 chr6 140103476 140103505 -9413532 + (TCC)n Simple_repeat Simple_repeat 3 31 0 1 1653 872 208 14 94 chr6 140103520 140103694 -9413343 - B3 SINE B2 -10 206 31 1 1653 672 172 0 46 chr6 140103694 140103846 -9413191 - L1Md_T LINE L1 -1 6581 6437 1 1653 872 208 14 94 chr6 140103846 140103894 -9413143 - B3 SINE B2 -186 30 2 1 1653 274 258 0 15 chr6 140104141 140104208 -9412829 + L1MEe LINE L1 264 329 -4525 1 1653 612 175 8 8 chr6 140104703 140104824 -9412213 - RMER4A LTR ERVK 0 466 346 2 1653 198 0 0 0 chr6 140104824 140104846 -9412191 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 2 1653 356 205 0 25 chr6 140104846 140104926 -9412111 - RMER4A LTR ERVK -81 385 308 2 1653 2698 154 19 58 chr6 140104931 140105413 -9411624 - RMER4A LTR ERVK -3 463 1 2 1653 629 269 29 0 chr6 140105570 140105741 -9411296 + ID_B1 SINE B4 1 176 -48 2 1653 236 229 16 16 chr6 140105836 140105898 -9411139 + B4A SINE B4 1 62 -230 2 1653 204 290 16 0 chr6 140105910 140105972 -9411065 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1653 1443 224 88 83 chr6 140106735 140107159 -9409878 + Lx8 LINE L1 6921 7333 -140 2 1653 690 13 0 0 chr6 140107159 140107238 -9409799 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 2 1653 1443 224 88 83 chr6 140107238 140107316 -9409721 + Lx8 LINE L1 7334 7425 -48 2 1653 465 19 0 0 chr6 140107958 140108012 -9409025 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1653 614 259 59 98 chr6 140108069 140108356 -9408681 - B4A SINE B4 -16 276 1 2 1653 240 35 0 0 chr6 140108393 140108422 -9408615 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1653 773 284 36 4 chr6 140108438 140108685 -9408352 - Lx8 LINE L1 -219 7254 7000 2 1653 1328 279 46 22 chr6 140108750 140109248 -9407789 - MT2A LTR ERVL -4 550 1 2 1653 1001 222 5 28 chr6 140111811 140112029 -9405008 - B3 SINE B2 0 216 4 2 1653 180 0 0 0 chr6 140112032 140112052 -9404985 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1653 741 208 48 48 chr6 140112491 140112658 -9404379 + ORR1E LTR MaLR 5 171 -188 2 1653 1063 49 49 0 chr6 140112666 140112830 -9404207 + (GGGAA)n Simple_repeat Simple_repeat 2 173 0 2 1653 504 276 8 8 chr6 140113403 140113531 -9403506 - B3A SINE B2 -70 128 1 2 1653 401 0 20 0 chr6 140113538 140113587 -9403450 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1653 1040 203 39 0 chr6 140113592 140113799 -9403238 - B3 SINE B2 0 216 2 2 1653 958 252 152 21 chr6 140114639 140114967 -9402070 - MTE2b LTR MaLR -8 371 1 2 1653 457 179 12 12 chr6 140115074 140115159 -9401878 - 5S rRNA rRNA -31 90 6 2 1653 271 304 74 25 chr6 140115243 140115405 -9401632 - MLT1B LTR MaLR -218 172 3 2 1654 812 294 73 59 chr6 140116052 140116547 -9400490 + ERVL-E-int LTR ERVL 44 545 -5122 2 1654 1149 292 84 67 chr6 140116720 140116792 -9400245 + Lx8 LINE L1 6866 6946 -527 2 1654 351 105 0 0 chr6 140116792 140116849 -9400188 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1654 1149 292 84 67 chr6 140116849 140117374 -9399663 + Lx8 LINE L1 6947 7472 -1 2 1654 463 325 65 28 chr6 140117384 140117599 -9399438 + ERVL-E-int LTR ERVL 750 972 -4695 2 1654 3519 15 5 0 chr6 140117614 140118008 -9399029 + MTA_Mm LTR MaLR 1 396 0 2 1654 1247 194 135 42 chr6 140118073 140118407 -9398630 + ORR1D1 LTR MaLR 10 374 0 2 1654 359 370 43 14 chr6 140118728 140118939 -9398098 + ERVL-E-int LTR ERVL 3301 3517 -2244 2 1654 23 0 0 0 chr6 140119619 140119642 -9397395 + AT_rich Low_complexity Low_complexity 1 23 0 2 1654 668 191 32 0 chr6 140119656 140119782 -9397255 - B3 SINE B2 -86 130 1 2 1654 1051 341 48 29 chr6 140119987 140120432 -9396605 + ERVL-E-int LTR ERVL 4678 5144 -523 2 1654 4479 135 7 71 chr6 140120432 140121239 -9395798 + RMER6A LTR ERVK 1 756 0 2 1654 1051 341 48 29 chr6 140121239 140121310 -9395727 + ERVL-E-int LTR ERVL 5145 5212 -455 2 1654 1330 256 16 41 chr6 140121310 140121697 -9395340 - MTEa LTR MaLR -1 378 2 2 1654 1051 341 48 29 chr6 140121697 140121738 -9395299 + ERVL-E-int LTR ERVL 5213 5247 -420 2 1654 2603 147 50 26 chr6 140122294 140122749 -9394288 - RMER4A LTR ERVK 0 466 1 2 1654 227 239 110 76 chr6 140122898 140123016 -9394021 - Charlie1a DNA MER1_type -14 1441 1320 2 1654 336 254 44 107 chr6 140123341 140123535 -9393502 - MLT1B LTR MaLR -18 372 135 2 1654 320 300 0 22 chr6 140123635 140123727 -9393310 - B4A SINE B4 -80 212 123 2 1654 237 33 0 0 chr6 140123727 140123757 -9393280 + (CCCCCT)n Simple_repeat Simple_repeat 2 31 0 2 1654 341 320 53 60 chr6 140123757 140123890 -9393147 - B4A SINE B4 -148 144 13 2 1654 470 262 141 20 chr6 140123923 140124122 -9392915 + MLT1A1 LTR MaLR 186 408 0 2 1654 384 222 109 16 chr6 140124122 140124246 -9392791 - MLT1B LTR MaLR -252 138 3 2 1654 267 355 19 0 chr6 140124485 140124592 -9392445 + MLT1H LTR MaLR 118 226 -323 2 1654 351 0 0 0 chr6 140124881 140124920 -9392117 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1654 2421 77 12 24 chr6 140125270 140125601 -9391436 - ORR1A2 LTR MaLR 0 327 1 2 1654 777 214 108 10 chr6 140125916 140126110 -9390927 - B3 SINE B2 -3 213 1 2 1654 354 45 0 0 chr6 140126211 140126255 -9390782 + (CGA)n Simple_repeat Simple_repeat 3 46 0 2 1654 281 207 22 28 chr6 140127547 140127648 -9389389 + B1F SINE Alu 14 149 0 2 1654 500 250 70 0 chr6 140127702 140127830 -9389207 + RSINE1 SINE B4 1 137 -28 2 1654 707 266 37 16 chr6 140127893 140128080 -9388957 + ID_B1 SINE B4 8 198 -26 2 1654 189 0 0 0 chr6 140128090 140128111 -9388926 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 2 1654 541 249 207 21 chr6 140129240 140129482 -9387555 + MLT1A1 LTR MaLR 110 396 -12 2 1654 470 315 16 22 chr6 140129885 140130070 -9386967 + B3 SINE B2 2 185 -31 2 1654 544 273 21 14 chr6 140130777 140130922 -9386115 + B1_Mur3 SINE Alu 1 146 -3 2 1654 732 80 0 0 chr6 140132165 140132278 -9384759 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 2 1654 678 13 0 0 chr6 140132287 140132366 -9384671 + (TGGA)n Simple_repeat Simple_repeat 2 80 0 2 1654 309 284 89 34 chr6 140132527 140132673 -9384364 + RSINE1 SINE B4 4 157 -8 2 1654 321 89 0 0 chr6 140132693 140132738 -9384299 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 2 1654 440 284 29 151 chr6 140134138 140134383 -9382654 + B4 SINE B4 7 221 -71 2 1654 863 155 0 0 chr6 140134246 140134388 -9382649 + B1_Mus1 SINE Alu 7 148 0 2 1654 477 34 0 0 chr6 140134392 140134451 -9382586 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 1654 272 269 13 13 chr6 140134484 140134563 -9382474 - MTE2b LTR MaLR -12 367 289 2 1654 225 167 13 143 chr6 140134570 140134647 -9382390 + MTD LTR MaLR 6 72 -349 2 1654 520 151 179 0 chr6 140134635 140134741 -9382296 + MTD LTR MaLR 203 327 -92 2 1654 553 286 30 12 chr6 140134742 140134759 -9382278 - B3A SINE B2 -29 169 153 2 1654 660 26 0 0 chr6 140134759 140134837 -9382200 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1654 553 286 30 12 chr6 140134837 140134985 -9382052 - B3A SINE B2 -46 152 2 2 1654 263 346 71 0 chr6 140136444 140136571 -9380466 + ORR1D2 LTR MaLR 1 136 -223 2 1654 201 192 19 19 chr6 140136605 140136658 -9380379 + C-rich Low_complexity Low_complexity 5 57 0 2 1654 342 269 42 14 chr6 140136861 140136977 -9380060 + MIR SINE MIR 51 167 -101 2 1654 1612 138 129 24 chr6 140137623 140137814 -9379223 - RMER17C LTR ERVK 0 410 219 2 1654 218 57 57 0 chr6 140137814 140137849 -9379188 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 2 1654 1612 138 129 24 chr6 140137849 140138028 -9379009 - RMER17C LTR ERVK -192 218 2 2 1654 387 41 0 0 chr6 140138318 140138367 -9378670 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1654 494 161 10 11 chr6 140138427 140138533 -9378504 + ORR1D2 LTR MaLR 269 379 0 2 1654 214 231 138 0 chr6 140138576 140138641 -9378396 + B1F1 SINE Alu 9 82 -67 2 1654 2921 193 82 17 chr6 140138641 140139149 -9377888 + Lx5 LINE L1 6409 6957 -93 2 1654 279 113 0 0 chr6 140139149 140139202 -9377835 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1654 2921 193 82 17 chr6 140139202 140139289 -9377748 + Lx5 LINE L1 6958 7043 -7 2 1654 1979 189 34 97 chr6 140139670 140140204 -9376833 - RLTR24 LTR ERV1 -29 500 1 2 1654 259 355 16 39 chr6 140140464 140140593 -9376444 - B1_Mur3 SINE Alu -23 126 1 2 1654 480 295 40 13 chr6 140140652 140140803 -9376234 - RSINE1 SINE B4 -4 161 7 2 1654 2003 228 69 8 chr6 140141086 140141594 -9375443 + Lx9 LINE L1 7100 7638 -6 2 1654 570 241 211 50 chr6 140143171 140143444 -9373593 - MTD LTR MaLR -85 334 1 2 1654 297 343 96 17 chr6 140143977 140144155 -9372882 - MT2A LTR ERVL -4 529 338 2 1654 605 187 57 119 chr6 140144176 140144352 -9372685 - RLTR31_Mur LTR ERVK 0 553 389 2 1654 756 291 91 34 chr6 140144342 140144739 -9372298 - RLTR17 LTR ERVK -176 516 63 2 1654 201 147 0 0 chr6 140146238 140146272 -9370765 + (CATG)n Simple_repeat Simple_repeat 1 34 0 2 1654 285 211 0 53 chr6 140146285 140146360 -9370677 + (CATG)n Simple_repeat Simple_repeat 1 71 0 2 1654 220 214 0 82 chr6 140146378 140146572 -9370465 + (CATG)n Simple_repeat Simple_repeat 1 178 0 2 1654 237 226 0 0 chr6 140147019 140147081 -9369956 + T-rich Low_complexity Low_complexity 3 64 0 2 1654 1057 253 27 73 chr6 140147081 140147318 -9369719 - Lx9 LINE L1 -425 7219 7003 2 1654 423 0 0 0 chr6 140147318 140147365 -9369672 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 2 1654 1057 253 27 73 chr6 140147365 140147455 -9369582 - Lx9 LINE L1 -642 7002 6907 2 1654 613 239 116 29 chr6 140147468 140147675 -9369362 - B4A SINE B4 -66 226 2 2 1654 255 250 68 107 chr6 140147853 140147956 -9369081 + MT2B LTR ERVL 165 263 -338 2 1654 575 189 90 0 chr6 140147864 140147986 -9369051 + B1_Mur1 SINE Alu 17 149 0 2 1654 584 242 0 24 chr6 140148053 140148176 -9368861 + RSINE1 SINE B4 13 132 -33 2 1654 228 35 0 0 chr6 140148681 140148710 -9368327 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1654 324 0 0 0 chr6 140148710 140148745 -9368292 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 1654 312 27 0 0 chr6 140148745 140148781 -9368256 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1654 317 278 87 0 chr6 140149412 140149527 -9367510 + MLT2B1 LTR ERVL 2 126 -394 2 1654 198 0 0 0 chr6 140150645 140150667 -9366370 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1654 650 243 88 50 chr6 140150725 140150963 -9366074 + MLT2C1 LTR ERVL 66 312 -85 2 1654 426 271 75 8 chr6 140151300 140151434 -9365603 - RSINE1 SINE B4 -20 145 3 2 1654 477 275 42 7 chr6 140151464 140151475 -9365562 + B1F1 SINE Alu 2 144 0 2 1654 593 240 0 16 chr6 140151475 140151602 -9365435 + ID_B1 SINE B4 95 219 -5 2 1654 381 312 27 27 chr6 140151706 140151854 -9365183 - B1F SINE Alu 0 149 2 2 1654 1322 251 97 3 chr6 140152117 140152500 -9364537 - MTD LTR MaLR 0 419 1 2 1654 243 0 0 0 chr6 140152674 140152701 -9364336 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1654 414 314 92 23 chr6 140152906 140153167 -9363870 - ORR1E LTR MaLR -24 335 57 2 1654 200 212 15 0 chr6 140154388 140154454 -9362583 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 1654 270 235 45 45 chr6 140154649 140154738 -9362299 - PB1D7 SINE Alu -2 118 30 3 1654 397 216 41 0 chr6 140154963 140155060 -9361977 - B3 SINE B2 0 216 116 3 1654 2656 98 44 5 chr6 140155155 140155543 -9361494 - RLTR44A LTR ERVK 0 405 3 3 1654 413 240 105 30 chr6 140155845 140155978 -9361059 + MTE2a LTR MaLR 9 151 -228 3 1654 737 262 43 0 chr6 140156014 140156201 -9360836 + B3 SINE B2 10 204 -12 3 1654 389 283 104 16 chr6 140156218 140156401 -9360636 + MTE2a LTR MaLR 196 394 -25 3 1654 393 314 66 38 chr6 140156815 140157027 -9360010 + AmnSINE1 SINE SINE 1 218 -357 3 1654 810 238 97 72 chr6 140157227 140157361 -9359676 + Lx8 LINE L1 7175 7307 -166 3 1654 536 29 14 0 chr6 140157361 140157431 -9359606 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 1654 810 238 97 72 chr6 140157431 140157586 -9359451 + Lx8 LINE L1 7308 7471 -2 3 1654 438 178 109 0 chr6 140157986 140158087 -9358950 + B3A SINE B2 87 198 0 3 1654 2083 118 69 18 chr6 140158101 140158491 -9358546 - RMER17C LTR ERVK 0 410 1 3 1654 252 185 0 0 chr6 140159157 140159211 -9357826 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1654 272 329 0 0 chr6 140159233 140159312 -9357725 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 1654 1371 224 97 37 chr6 140159679 140160187 -9356850 - MTD LTR MaLR -12 407 1 3 1654 891 199 66 5 chr6 140161054 140161251 -9355786 - B3 SINE B2 -1 215 7 3 1654 707 240 32 0 chr6 140161933 140162103 -9354934 + B3A SINE B2 1 180 -36 3 1654 291 220 20 20 chr6 140162212 140162314 -9354723 + (TA)n Simple_repeat Simple_repeat 2 103 0 3 1654 316 322 16 24 chr6 140162707 140162831 -9354206 + LTR16C LTR ERVL 365 487 -2 3 1654 281 255 27 89 chr6 140163402 140163514 -9353523 + PB1D9 SINE Alu 9 113 -7 3 1654 525 245 84 58 chr6 140163530 140163706 -9353331 + B3A SINE B2 7 198 0 3 1654 2986 39 25 0 chr6 140163828 140164190 -9352847 - L1Md_F3 LINE L1 -14 6570 6200 3 1654 215 150 25 0 chr6 140164255 140164295 -9352742 + A-rich Low_complexity Low_complexity 3 43 0 3 1654 213 121 0 0 chr6 140164345 140164378 -9352659 + (TAA)n Simple_repeat Simple_repeat 3 35 0 3 1654 213 281 11 0 chr6 140164807 140164896 -9352141 + A-rich Low_complexity Low_complexity 3 92 0 3 1654 325 260 12 23 chr6 140165470 140165643 -9351394 + ORR1B1-int LTR MaLR 584 754 -755 3 1654 1037 78 0 0 chr6 140165541 140165683 -9351354 + B1_Mus2 SINE Alu 6 147 0 3 1654 258 122 0 0 chr6 140165756 140165797 -9351240 - MTEa LTR MaLR 0 379 339 3 1654 313 302 61 38 chr6 140166011 140166142 -9350895 - ORR1E LTR MaLR -225 134 1 3 1654 511 215 151 57 chr6 140166319 140166511 -9350526 + L1MA8 LINE L1 5568 5777 -514 3 1654 400 274 165 6 chr6 140166506 140166682 -9350355 + L1MA8 LINE L1 5892 6095 -196 3 1654 262 250 25 89 chr6 140166690 140166769 -9350268 - ID SINE ID -149 75 2 3 1654 346 316 165 20 chr6 140166819 140167165 -9349872 + L2a LINE L2 2201 2596 -823 3 1654 737 255 93 139 chr6 140167202 140167598 -9349439 + MTE2b LTR MaLR 1 378 -1 3 1654 3593 303 62 18 chr6 140167600 140168896 -9348141 + MTE2b-int LTR MaLR 2 1355 -225 3 1654 261 274 27 0 chr6 140169548 140169621 -9347416 + L2a LINE L2 3338 3412 -14 3 1654 25 0 0 0 chr6 140169732 140169757 -9347280 + AT_rich Low_complexity Low_complexity 1 25 0 3 1654 309 175 0 0 chr6 140170119 140170176 -9346861 + ID4 SINE ID 2 58 -25 3 1654 468 0 0 0 chr6 140170887 140170939 -9346098 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1654 244 250 14 14 chr6 140171193 140171266 -9345771 + CT-rich Low_complexity Low_complexity 2 74 0 3 1654 504 281 12 88 chr6 140171620 140171780 -9345257 + RSINE1 SINE B4 12 159 -6 3 1654 599 71 12 0 chr6 140171780 140171865 -9345172 + (GGAA)n Simple_repeat Simple_repeat 2 87 0 3 1654 7222 189 39 13 chr6 140171894 140173424 -9343613 + MurERV4-int LTR ERVK 136 1790 -3470 3 1654 3816 124 47 30 chr6 140173420 140174059 -9342978 + MurERV4-int LTR ERVK 1913 2562 -2698 3 1654 2233 168 0 33 chr6 140174046 140174445 -9342592 + MurERV4-int LTR ERVK 4872 5257 -3 3 1654 2740 131 37 13 chr6 140174448 140174903 -9342134 + RMER4A LTR ERVK 1 466 0 3 1654 262 246 139 12 chr6 140175673 140175846 -9341191 + L1MA6 LINE L1 6105 6299 -1 3 1654 470 243 142 45 chr6 140175925 140176080 -9340957 - B3A SINE B2 -27 171 2 3 1654 234 0 0 0 chr6 140176105 140176131 -9340906 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1654 785 253 113 0 chr6 140176147 140176341 -9340696 + ID_B1 SINE B4 4 219 -5 3 1654 194 91 0 29 chr6 140176389 140176423 -9340614 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 1654 592 271 106 40 chr6 140176671 140176944 -9340093 - B4A SINE B4 0 292 2 3 1654 230 229 14 14 chr6 140177367 140177438 -9339599 - HAL1b LINE L1 -60 1949 1879 3 1654 279 79 0 0 chr6 140178353 140178391 -9338646 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1654 752 247 15 25 chr6 140178445 140178644 -9338393 - B3A SINE B2 0 198 2 3 1654 21 57 0 0 chr6 140178657 140178692 -9338345 + AT_rich Low_complexity Low_complexity 1 35 0 3 1654 429 98 58 10 chr6 140178711 140178814 -9338223 + (TAGA)n Simple_repeat Simple_repeat 3 110 0 3 1654 829 250 123 71 chr6 140179562 140179899 -9337138 + L1M2 LINE L1 4926 5306 -837 3 1654 189 0 0 0 chr6 140179899 140179920 -9337117 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1654 829 242 81 23 chr6 140179920 140180103 -9336934 + L1M2 LINE L1 5307 5480 -820 3 1654 770 299 26 26 chr6 140180127 140180395 -9336642 + B4A SINE B4 3 270 -22 3 1654 841 186 160 90 chr6 140180494 140180837 -9336200 + ORR1D2 LTR MaLR 4 370 0 3 1654 570 239 0 0 chr6 140180860 140180969 -9336068 + PB1D9 SINE Alu 1 109 -11 3 1654 435 130 0 0 chr6 140181154 140181231 -9335806 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1654 1893 216 42 9 chr6 140182034 140182487 -9334550 + Lx5 LINE L1 6550 7417 -43 3 1654 375 262 47 0 chr6 140182578 140182685 -9334352 - ORR1E LTR MaLR -176 183 72 3 1654 240 356 17 0 chr6 140182957 140183072 -9333965 - PB1D10 SINE Alu 0 117 1 3 1654 351 0 0 0 chr6 140184252 140184291 -9332746 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 3 1654 543 316 17 6 chr6 140186038 140186210 -9330827 + B4A SINE B4 1 174 -118 3 1654 183 42 0 0 chr6 140186327 140186351 -9330686 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1654 651 208 104 0 chr6 140186380 140186524 -9330513 + B3A SINE B2 1 159 -39 3 1654 618 14 0 0 chr6 140186524 140186595 -9330442 + (TC)n Simple_repeat Simple_repeat 1 71 0 3 1654 207 0 0 0 chr6 140186597 140186620 -9330417 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1654 273 306 50 44 chr6 140186939 140187120 -9329917 - RMER4A LTR ERVK -277 189 8 3 1654 1042 252 128 30 chr6 140187862 140188230 -9328807 + MTD LTR MaLR 1 404 -15 3 1654 303 330 28 9 chr6 140188461 140188568 -9328469 - PB1D7 SINE Alu 0 120 12 3 1654 240 301 65 22 chr6 140188753 140188892 -9328145 - MER63D DNA AcHobo -863 198 54 3 1654 536 240 56 0 chr6 140189532 140189657 -9327380 + ID_B1 SINE B4 82 213 -11 3 1654 1314 23 8 29 chr6 140189671 140190159 -9326878 + (TAGA)n Simple_repeat Simple_repeat 1 477 0 3 1654 25 0 0 0 chr6 140190708 140190733 -9326304 + AT_rich Low_complexity Low_complexity 1 25 0 3 1654 304 280 85 31 chr6 140191516 140191645 -9325392 - B1F2 SINE Alu -13 136 1 3 1654 505 250 63 58 chr6 140191732 140191923 -9325114 + B3A SINE B2 3 194 -4 3 1654 213 121 0 0 chr6 140192763 140192796 -9324241 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1654 186 191 0 0 chr6 140192977 140193019 -9324018 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1654 579 303 0 25 chr6 140193022 140193181 -9323856 - RSINE1 SINE B4 0 165 11 3 1654 331 343 21 7 chr6 140193233 140193377 -9323660 - B4A SINE B4 -140 152 7 3 1654 1667 219 35 3 chr6 140194015 140194385 -9322652 + RLTR14 LTR ERV1 1 382 0 3 1654 853 241 20 10 chr6 140195222 140195419 -9321618 + ID_B1 SINE B4 4 202 -22 3 1654 803 209 62 16 chr6 140195995 140196189 -9320848 - B3 SINE B2 -11 205 3 3 1654 622 235 15 0 chr6 140196515 140196647 -9320390 - RSINE1 SINE B4 -29 136 3 3 1654 800 263 5 24 chr6 140196880 140197090 -9319947 + B3 SINE B2 7 212 -4 3 1654 680 249 47 65 chr6 140197762 140198037 -9319000 + RLTR11A2 LTR ERVK 1 270 -257 3 1654 366 42 0 0 chr6 140198633 140198681 -9318356 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1654 482 202 184 0 chr6 140199635 140199749 -9317288 - ID_B1 SINE B4 0 224 90 3 1654 226 274 32 0 chr6 140200131 140200193 -9316844 + PB1D10 SINE Alu 27 90 -27 3 1654 396 0 0 0 chr6 140200193 140200237 -9316800 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1654 350 304 92 12 chr6 140200309 140200472 -9316565 - Lx8 LINE L1 -127 7346 7171 3 1654 362 281 199 7 chr6 140200544 140200680 -9316357 - RSINE1 SINE B4 -2 163 2 3 1654 441 0 0 0 chr6 140200746 140200795 -9316242 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1654 369 0 0 0 chr6 140201465 140201506 -9315531 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1654 529 257 68 0 chr6 140201543 140201691 -9315346 - B4A SINE B4 -12 280 123 3 1654 866 143 7 45 chr6 140202932 140203086 -9313951 + B1_Mur4 SINE Alu 2 149 -1 3 1654 870 262 55 48 chr6 140203175 140203447 -9313590 + MTE2b LTR MaLR 58 331 -48 3 1654 670 279 128 35 chr6 140203675 140203957 -9313080 - ORR1D2 LTR MaLR -62 308 1 3 1654 298 218 18 0 chr6 140204149 140204204 -9312833 - MTEa LTR MaLR -270 109 54 3 1654 458 340 86 9 chr6 140204222 140204536 -9312501 + MLT2B1 LTR ERVL 106 503 -51 3 1654 358 302 110 28 chr6 140204616 140204725 -9312312 + RSINE1 SINE B4 48 165 0 3 1654 914 90 8 0 chr6 140204898 140205032 -9312005 + (TA)n Simple_repeat Simple_repeat 1 135 0 3 1654 416 257 0 34 chr6 140205065 140205182 -9311855 - PB1D10 SINE Alu -4 113 1 3 1654 920 238 42 0 chr6 140205215 140205404 -9311633 - B3A SINE B2 0 198 2 4 1654 203 79 26 0 chr6 140206016 140206054 -9310983 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1654 617 268 0 34 chr6 140206216 140206363 -9310674 + B4 SINE B4 2 143 -149 4 1654 1390 152 77 42 chr6 140206363 140206797 -9310240 - RMER17C LTR ERVK -519 439 16 4 1654 303 278 107 107 chr6 140206730 140206927 -9310110 + B4A SINE B4 92 288 -4 4 1654 353 352 42 24 chr6 140207093 140207259 -9309778 + L4 LINE RTE 1466 1634 -395 4 1654 266 299 0 0 chr6 140207262 140207329 -9309708 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 4 1654 504 0 0 0 chr6 140207374 140207430 -9309607 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1654 758 221 36 72 chr6 140207430 140207625 -9309412 - B3 SINE B2 -28 188 1 4 1654 647 218 48 34 chr6 140207834 140207981 -9309056 - ID_B1 SINE B4 0 224 76 4 1654 496 298 0 0 chr6 140208063 140208187 -9308850 - RSINE1 SINE B4 -41 124 1 4 1654 372 43 0 0 chr6 140209216 140209262 -9307775 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1654 2473 141 19 213 chr6 140209302 140209879 -9307158 + RLTR20D LTR ERVK 30 465 -103 4 1654 495 0 0 0 chr6 140209879 140209934 -9307103 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1654 2473 141 19 213 chr6 140209934 140210024 -9307013 + RLTR20D LTR ERVK 466 567 -1 4 1654 1038 285 41 4 chr6 140210024 140210295 -9306742 - B4A SINE B4 -2 290 10 4 1654 364 282 47 28 chr6 140210722 140210828 -9306209 - ZP3AR Satellite Satellite -60 152 45 4 1654 780 283 71 32 chr6 140211121 140211500 -9305537 + RMER5 LTR ERV1 54 447 -87 4 1654 825 277 58 134 chr6 140211697 140212114 -9304923 + MTD LTR MaLR 22 406 -13 4 1654 241 277 87 26 chr6 140212266 140212381 -9304656 + MER34A LTR ERV1 427 548 -23 4 1654 865 298 0 17 chr6 140212935 140213167 -9303870 + MTEa LTR MaLR 33 260 -119 4 1654 1082 178 55 25 chr6 140213166 140213403 -9303634 + ORR1D1 LTR MaLR 131 374 0 4 1654 249 33 0 0 chr6 140214010 140214040 -9302997 + (GAA)n Simple_repeat Simple_repeat 3 32 0 4 1654 1081 282 88 25 chr6 140214867 140215311 -9301726 + Lx8 LINE L1 6906 7377 -96 4 1654 586 313 15 20 chr6 140216788 140216990 -9300047 - ID_B1 SINE B4 -16 208 8 4 1654 441 0 0 0 chr6 140218087 140218136 -9298901 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1654 451 258 88 29 chr6 140218159 140218295 -9298742 - B3A SINE B2 -53 145 2 4 1654 428 108 0 0 chr6 140218349 140218414 -9298623 - B1_Mus2 SINE Alu -7 140 76 4 1654 261 340 19 57 chr6 140218889 140219098 -9297939 + L2a LINE L2 3225 3425 -1 4 1654 655 242 0 0 chr6 140219550 140219678 -9297359 + B1F2 SINE Alu 16 143 -6 4 1654 473 311 3 62 chr6 140219938 140220115 -9296922 + B3A SINE B2 40 212 -4 4 1654 957 190 5 58 chr6 140220583 140220790 -9296247 - MTD LTR MaLR -211 208 13 4 1654 420 246 32 56 chr6 140220983 140221108 -9295929 + RSINE1 SINE B4 25 146 -19 4 1654 738 251 63 79 chr6 140221106 140221556 -9295481 - RMER15 LTR ERVL -9 566 1 4 1654 389 247 47 0 chr6 140221620 140221737 -9295300 + B1F SINE Alu 10 142 -7 4 1654 415 250 475 4 chr6 140221752 140222002 -9295035 + L1MA8 LINE L1 5223 5590 -701 4 1654 303 261 16 126 chr6 140222019 140222146 -9294891 + B1F2 SINE Alu 32 144 -5 4 1654 236 293 53 0 chr6 140222290 140222365 -9294672 + ID4 SINE ID 4 82 -1 4 1654 289 232 29 0 chr6 140222307 140222376 -9294661 + ID_B1 SINE B4 26 96 -128 4 1654 249 144 18 63 chr6 140222532 140222643 -9294394 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 1654 777 251 6 11 chr6 140222665 140222846 -9294191 + B3A SINE B2 5 184 -14 4 1654 31 0 0 0 chr6 140222872 140222903 -9294134 + AT_rich Low_complexity Low_complexity 1 31 0 4 1654 445 230 63 0 chr6 140222903 140223029 -9294008 + L1MA8 LINE L1 6155 6288 -3 4 1654 343 318 22 50 chr6 140223109 140223288 -9293749 + L1MB7 LINE L1 4992 5165 -981 4 1654 258 253 50 59 chr6 140223378 140223479 -9293558 + L1MB7 LINE L1 5154 5253 -893 4 1654 492 265 37 15 chr6 140223479 140223613 -9293424 - MLT1A1 LTR MaLR 0 408 272 4 1654 322 282 58 0 chr6 140223614 140223717 -9293320 - B1F1 SINE Alu -40 109 1 4 1654 332 263 44 42 chr6 140223727 140223866 -9293171 - MLT1A1 LTR MaLR -197 211 86 4 1654 2207 39 7 10 chr6 140223861 140224354 -9292683 - RLTR10C LTR ERVK -11 425 1 4 1654 560 288 85 21 chr6 140224396 140224720 -9292317 + L1MB7 LINE L1 5236 5568 -616 4 1654 439 310 27 27 chr6 140224730 140224876 -9292161 + RSINE1 SINE B4 20 165 0 4 1654 183 80 0 0 chr6 140224876 140224901 -9292136 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1654 1162 266 114 46 chr6 140224926 140225470 -9291567 + L1MB7 LINE L1 5599 6179 -5 4 1654 579 267 148 55 chr6 140225961 140226286 -9290751 + ORR1E LTR MaLR 1 355 -4 4 1654 612 42 42 0 chr6 140226371 140226466 -9290571 + (TCTA)n Simple_repeat Simple_repeat 1 99 0 4 1654 507 294 73 56 chr6 140226977 140227211 -9289826 - MLT1A0 LTR MaLR 0 365 128 4 1654 207 0 0 0 chr6 140227288 140227311 -9289726 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1654 2502 167 52 18 chr6 140227311 140227811 -9289226 - RMER5 LTR ERV1 -17 517 1 4 1654 219 139 0 0 chr6 140228091 140228127 -9288910 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 4 1654 844 180 164 0 chr6 140228127 140228310 -9288727 - ID_B1 SINE B4 -10 214 2 4 1654 685 291 0 0 chr6 140228756 140228938 -9288099 + B3A SINE B2 1 182 -16 4 1654 1031 223 19 5 chr6 140228996 140229208 -9287829 + B3 SINE B2 1 215 -1 4 1654 563 264 56 10 chr6 140229702 140229897 -9287140 + ID_B1 SINE B4 2 205 -19 4 1654 267 233 0 72 chr6 140229909 140230020 -9287017 + (GGGTG)n Simple_repeat Simple_repeat 4 106 0 4 1654 569 254 91 5 chr6 140231323 140231521 -9285516 + B3 SINE B2 1 215 -1 4 1654 486 264 13 71 chr6 140231946 140232101 -9284936 - B1F SINE Alu 0 149 4 4 1654 757 270 108 60 chr6 140232920 140233175 -9283862 - ORR1E LTR MaLR -8 351 77 4 1654 919 234 32 5 chr6 140233175 140233394 -9283643 + URR1B DNA MER1_type 1 225 0 4 1654 757 270 108 60 chr6 140233394 140233473 -9283564 - ORR1E LTR MaLR -283 76 1 4 1654 225 0 0 0 chr6 140233477 140233502 -9283535 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1654 755 284 42 11 chr6 140234522 140234782 -9282255 - B4A SINE B4 -23 269 2 4 1654 327 242 67 0 chr6 140234810 140234930 -9282107 - Lx7 LINE L1 -4 7692 7565 4 1654 3186 263 166 31 chr6 140234941 140235045 -9281992 - Lx7 LINE L1 -282 7414 7292 4 1654 1343 51 6 0 chr6 140235045 140235221 -9281816 + (GGGAGA)n Simple_repeat Simple_repeat 1 177 0 4 1654 3186 263 166 31 chr6 140235221 140236385 -9280652 - Lx7 LINE L1 -405 7291 5974 4 1654 2456 204 48 61 chr6 140236407 140237028 -9280009 - Lx7 LINE L1 -38 5842 5230 4 1654 1696 188 11 34 chr6 140237797 140238149 -9278888 + Lx LINE L1 6286 6629 -25 4 1654 674 24 0 12 chr6 140238155 140238240 -9278797 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 4 1654 273 190 0 0 chr6 140238625 140238683 -9278354 + ID_B1 SINE B4 153 210 -14 4 1654 909 52 0 0 chr6 140239041 140239156 -9277881 + (GGGGA)n Simple_repeat Simple_repeat 4 118 0 4 1654 750 133 89 0 chr6 140239157 140239315 -9277722 - RMER17C LTR ERVK -234 176 5 4 1654 1114 76 7 7 chr6 140239333 140239479 -9277558 + B1_Mus2 SINE Alu 1 146 -1 4 1654 274 245 39 39 chr6 140239736 140239838 -9277199 + RMER15 LTR ERVL 380 481 -94 4 1654 432 359 59 44 chr6 140239892 140240096 -9276941 + B4 SINE B4 84 290 -2 4 1654 630 0 0 0 chr6 140240126 140240196 -9276841 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 1654 241 322 12 74 chr6 140240889 140240992 -9276045 + B1F2 SINE Alu 8 108 -9 4 1654 261 211 19 19 chr6 140240994 140241047 -9275990 + ID4_ SINE ID 5 57 -26 4 1654 261 0 0 0 chr6 140241057 140241086 -9275951 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1654 636 14 0 0 chr6 140241352 140241425 -9275612 + (GTTTG)n Simple_repeat Simple_repeat 5 77 0 4 1654 463 258 8 0 chr6 140241428 140241548 -9275489 - B1F1 SINE Alu 0 149 29 4 1654 233 167 148 16 chr6 140242266 140242327 -9274710 + PB1D10 SINE Alu 11 79 -38 4 1654 771 110 15 23 chr6 140242818 140242948 -9274089 + B1_Mur2 SINE Alu 21 149 0 4 1654 585 290 63 34 chr6 140243171 140243410 -9273627 - B4A SINE B4 0 292 47 4 1654 562 228 72 77 chr6 140243448 140243643 -9273394 - B3A SINE B2 -2 196 3 4 1654 362 218 38 13 chr6 140243671 140243750 -9273287 - ID2 SINE ID -1 82 2 4 1654 539 240 23 0 chr6 140244062 140244191 -9272846 - RSINE1 SINE B4 -23 142 11 4 1655 195 129 0 0 chr6 140247138 140247169 -9269868 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1655 231 233 156 52 chr6 140247173 140247250 -9269787 - RSINE1 SINE B4 -60 105 21 4 1655 1139 95 0 0 chr6 140247450 140247597 -9269440 - B1_Mus2 SINE Alu 0 147 1 4 1655 22 0 0 0 chr6 140248027 140248049 -9268988 + AT_rich Low_complexity Low_complexity 1 22 0 4 1655 829 271 65 110 chr6 140248122 140248504 -9268533 - MTE2a LTR MaLR -14 365 1 4 1655 180 0 0 0 chr6 140248604 140248624 -9268413 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1655 256 246 34 82 chr6 140248781 140248927 -9268110 + L1MD LINE L1 5079 5217 -929 4 1655 543 31 0 0 chr6 140249326 140249391 -9267646 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1655 214 196 20 0 chr6 140249394 140249445 -9267592 + GA-rich Low_complexity Low_complexity 3 54 0 4 1655 244 258 0 61 chr6 140249447 140249513 -9267524 + B4A SINE B4 87 148 -144 4 1655 439 229 9 9 chr6 140249460 140249566 -9267471 + PB1D10 SINE Alu 11 116 -1 4 1655 21 0 0 0 chr6 140249683 140249704 -9267333 + AT_rich Low_complexity Low_complexity 1 21 0 4 1655 418 226 86 14 chr6 140249841 140249980 -9267057 + MLT1A1 LTR MaLR 260 408 0 4 1655 1121 62 0 7 chr6 140250336 140250472 -9266565 + B1_Mus2 SINE Alu 2 137 -10 4 1655 183 42 0 0 chr6 140250472 140250496 -9266541 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1655 404 171 12 0 chr6 140250995 140251077 -9265960 + G-rich Low_complexity Low_complexity 5 87 0 5 1655 231 270 0 73 chr6 140251208 140251276 -9265761 + B4A SINE B4 1 63 -229 5 1655 1212 85 26 31 chr6 140251777 140251971 -9265066 + B2_Mm2 SINE B2 2 194 -1 5 1655 681 173 0 0 chr6 140251973 140252100 -9264937 + GA-rich Low_complexity Low_complexity 3 129 0 5 1655 304 21 62 0 chr6 140252324 140252372 -9264665 + (CAAAAA)n Simple_repeat Simple_repeat 3 53 0 5 1655 571 56 9 9 chr6 140252393 140252502 -9264535 + (GGAA)n Simple_repeat Simple_repeat 1 109 0 5 1655 456 100 0 0 chr6 140252505 140252585 -9264452 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1655 844 270 25 0 chr6 140252600 140252796 -9264241 + ID_B1 SINE B4 21 221 -3 5 1655 397 300 104 61 chr6 140252956 140253086 -9263951 + MLT1G1 LTR MaLR 251 389 -190 5 1655 3714 139 51 45 chr6 140253086 140253833 -9263204 - RMER17A LTR ERVK 0 751 1 5 1655 397 300 104 61 chr6 140253833 140253982 -9263055 + MLT1G1 LTR MaLR 390 542 -37 5 1655 1415 230 35 38 chr6 140254229 140254600 -9262437 + ORR1D2 LTR MaLR 1 370 0 5 1655 434 209 53 26 chr6 140254602 140254750 -9262287 + ORR1D2 LTR MaLR 185 404 -15 5 1655 405 250 11 11 chr6 140254841 140254934 -9262103 - PB1D10 SINE Alu -16 101 9 5 1655 685 165 68 0 chr6 140255048 140255181 -9261856 + B1_Mur3 SINE Alu 8 149 0 5 1655 422 274 0 52 chr6 140256143 140256278 -9260759 - B1F SINE Alu -21 128 1 5 1655 230 208 0 20 chr6 140256325 140256374 -9260663 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1655 545 200 9 0 chr6 140256396 140256501 -9260536 - RSINE1 SINE B4 -37 128 23 5 1655 1239 259 53 9 chr6 140257209 140257528 -9259509 - ORR1E LTR MaLR -17 342 10 5 1655 416 278 39 31 chr6 140258143 140258273 -9258764 - B1_Mur2 SINE Alu -17 132 2 5 1655 395 236 22 11 chr6 140258324 140258414 -9258623 - MTEa LTR MaLR -52 327 237 5 1655 2149 85 65 0 chr6 140258502 140258808 -9258229 - ORR1A2 LTR MaLR -1 326 1 5 1655 2557 91 3 35 chr6 140259165 140259542 -9257495 - RLTR8 LTR ERVK 0 365 1 5 1655 259 305 8 63 chr6 140259573 140259699 -9257338 - MTEa LTR MaLR -199 160 42 5 1655 2418 108 112 27 chr6 140259860 140260298 -9256739 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1655 654 184 93 72 chr6 140260589 140260782 -9256255 + B3A SINE B2 1 197 -1 5 1655 420 273 81 0 chr6 140261097 140261196 -9255841 - RSINE1 SINE B4 0 165 59 5 1655 2227 151 21 0 chr6 140261225 140261603 -9255434 - MTC LTR MaLR -20 401 16 5 1655 189 175 0 0 chr6 140262023 140262063 -9254974 + T-rich Low_complexity Low_complexity 1 40 0 5 1655 581 310 25 13 chr6 140263077 140263312 -9253725 - RMER15 LTR ERVL -2 573 336 5 1655 856 76 11 39 chr6 140263746 140263925 -9253112 + (TTGG)n Simple_repeat Simple_repeat 2 175 0 5 1655 670 202 21 77 chr6 140264274 140264423 -9252614 + B3 SINE B2 51 202 -14 5 1655 405 0 0 0 chr6 140264423 140264468 -9252569 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 5 1655 27 0 0 0 chr6 140264477 140264504 -9252533 + AT_rich Low_complexity Low_complexity 1 27 0 5 1655 484 139 34 17 chr6 140265700 140265817 -9251220 + (TGGA)n Simple_repeat Simple_repeat 4 122 0 5 1655 296 49 0 0 chr6 140265996 140266037 -9251000 + RMER17A2 LTR ERVK 1 41 -865 5 1655 10144 81 9 10 chr6 140266037 140267198 -9249839 - MERVK26-int LTR ERVK -4646 2273 1124 5 1655 3101 108 54 62 chr6 140267198 140267714 -9249323 + RLTR1B LTR ERV1 1 512 0 5 1655 10144 81 9 10 chr6 140267714 140267866 -9249171 - MERVK26-int LTR ERVK -5796 1123 961 5 1655 2205 84 3 16 chr6 140267834 140268150 -9248887 - MERVK26-int LTR ERVK -2019 4900 4589 5 1655 637 98 108 0 chr6 140268150 140268252 -9248785 + 5S rRNA rRNA 1 113 -8 5 1655 964 126 35 85 chr6 140268246 140268445 -9248592 - RLTR26 LTR ERVK -430 212 24 5 1655 674 270 0 42 chr6 140268677 140268843 -9248194 + B3A SINE B2 1 159 -39 5 1655 725 61 10 0 chr6 140268844 140268943 -9248094 + (TG)n Simple_repeat Simple_repeat 1 100 0 5 1655 369 0 0 0 chr6 140269056 140269097 -9247940 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 1655 215 95 0 87 chr6 140269684 140269730 -9247307 + T-rich Low_complexity Low_complexity 1 42 0 5 1655 555 229 0 17 chr6 140269746 140269866 -9247171 + B3 SINE B2 4 121 -95 5 1655 180 0 0 0 chr6 140269969 140269989 -9247048 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1655 613 286 0 21 chr6 140269990 140270133 -9246904 - RSINE1 SINE B4 -15 150 11 5 1655 471 63 0 0 chr6 140270140 140270203 -9246834 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 1655 227 280 65 26 chr6 140270203 140270280 -9246757 - B1_Mur3 SINE Alu -11 138 59 5 1655 1836 117 3 87 chr6 140270600 140270956 -9246081 + IAPLTR1a_Mm LTR ERVK 1 326 -11 5 1655 4568 56 65 43 chr6 140270957 140271605 -9245432 + IAPEz-int LTR ERVK 1 662 -5819 5 1655 454 66 0 32 chr6 140271605 140271668 -9245369 + IAPEz-int LTR ERVK 1359 1419 -5062 5 1655 1829 119 4 4 chr6 140271657 140271919 -9245118 + IAPEz-int LTR ERVK 2236 2497 -5183 5 1655 953 80 24 0 chr6 140271914 140272039 -9244998 + IAPEz-int LTR ERVK 4783 4910 -2770 5 1655 27018 12 2 0 chr6 140272039 140274990 -9242047 + IAPEz-int LTR ERVK 3525 6481 0 5 1655 1836 117 3 87 chr6 140274990 140275346 -9241691 + IAPLTR1a_Mm LTR ERVK 1 326 -11 5 1655 1184 101 6 0 chr6 140275839 140276017 -9241020 + (GGA)n Simple_repeat Simple_repeat 2 180 0 5 1655 1028 64 0 7 chr6 140276017 140276158 -9240879 + (GAAA)n Simple_repeat Simple_repeat 3 143 0 5 1655 825 257 9 27 chr6 140276170 140276390 -9240647 + ID_B1 SINE B4 2 217 -7 5 1655 434 241 0 0 chr6 140276398 140276481 -9240556 + B3 SINE B2 1 83 -133 5 1655 392 264 55 0 chr6 140276478 140276569 -9240468 + RSINE1 SINE B4 45 140 -25 5 1655 288 72 35 18 chr6 140276571 140276628 -9240409 + (TAA)n Simple_repeat Simple_repeat 3 60 0 5 1655 822 196 314 20 chr6 140276836 140277180 -9239857 - RMER15 LTR ERVL -104 471 27 5 1655 492 32 0 0 chr6 140277326 140277388 -9239649 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1655 459 223 3 0 chr6 140277388 140277495 -9239542 - B4 SINE B4 -76 216 108 5 1655 280 237 51 0 chr6 140277593 140277652 -9239385 + Lx9 LINE L1 7353 7414 -230 5 1655 459 35 0 0 chr6 140277693 140277750 -9239287 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1655 575 212 13 81 chr6 140277931 140278080 -9238957 + RSINE1 SINE B4 21 159 -6 5 1655 185 0 40 0 chr6 140278106 140278131 -9238906 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1655 344 225 147 63 chr6 140278334 140278586 -9238451 - L1M3e LINE L1 -5684 1346 1074 5 1655 2377 120 66 106 chr6 140278973 140279475 -9237562 - RLTR45 LTR ERVK 0 482 1 5 1655 206 179 44 15 chr6 140279668 140279736 -9237301 + A-rich Low_complexity Low_complexity 5 74 0 5 1655 397 207 11 44 chr6 140279738 140279829 -9237208 - B1_Mur3 SINE Alu -61 88 1 5 1655 200 121 30 0 chr6 140279843 140279876 -9237161 + (TTG)n Simple_repeat Simple_repeat 2 35 0 5 1655 804 122 21 28 chr6 140279909 140280053 -9236984 - B1_Mur4 SINE Alu 0 150 8 5 1655 231 204 0 0 chr6 140280275 140280324 -9236713 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1655 2701 54 0 0 chr6 140280517 140280871 -9236166 - MTB LTR MaLR -46 354 1 5 1655 305 226 173 19 chr6 140280878 140280982 -9236055 - MT2A LTR ERVL -227 306 187 5 1655 278 167 91 0 chr6 140280985 140281051 -9235986 - MT2A LTR ERVL -461 72 1 5 1655 498 17 0 0 chr6 140281076 140281135 -9235902 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 1655 477 219 9 9 chr6 140281201 140281307 -9235730 + ORR1D2 LTR MaLR 216 321 -49 5 1655 3576 55 2 26 chr6 140282271 140282735 -9234302 - L1Md_F2 LINE L1 0 6582 6130 5 1655 1392 53 0 0 chr6 140282735 140282904 -9234133 + L1Md_T LINE L1 5954 6122 -460 5 1655 318 161 18 0 chr6 140282956 140283012 -9234025 + ORR1D2 LTR MaLR 307 363 -11 5 1655 229 191 0 21 chr6 140283135 140283183 -9233854 + G-rich Low_complexity Low_complexity 2 48 0 5 1655 712 191 12 0 chr6 140283188 140283361 -9233676 + GA-rich Low_complexity Low_complexity 3 177 0 5 1655 377 188 12 0 chr6 140283372 140283457 -9233580 + GA-rich Low_complexity Low_complexity 5 90 0 5 1655 870 299 38 29 chr6 140283457 140283770 -9233267 - MTEa LTR MaLR -59 320 5 5 1655 739 259 98 11 chr6 140283774 140284051 -9232986 + MER57F LTR ERV1 136 436 0 5 1655 22 0 0 0 chr6 140285531 140285553 -9231484 + AT_rich Low_complexity Low_complexity 1 22 0 5 1655 209 83 28 0 chr6 140285894 140285930 -9231107 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 5 1655 590 131 24 8 chr6 140286219 140286342 -9230695 + GA-rich Low_complexity Low_complexity 3 127 0 5 1655 268 306 30 10 chr6 140287073 140287167 -9229870 + B4 SINE B4 1 96 -196 5 1655 572 267 81 0 chr6 140287167 140287328 -9229709 + B3 SINE B2 1 174 -42 5 1655 438 314 7 7 chr6 140288342 140288480 -9228557 - RSINE1 SINE B4 -26 139 2 5 1655 262 266 99 92 chr6 140288570 140288711 -9228326 + B4A SINE B4 4 145 -147 5 1655 705 24 0 0 chr6 140288885 140288968 -9228069 + (GA)n Simple_repeat Simple_repeat 2 84 0 5 1655 549 236 0 0 chr6 140289218 140289648 -9227389 + CT-rich Low_complexity Low_complexity 1 430 0 5 1655 305 235 0 17 chr6 140289674 140289791 -9227246 + CT-rich Low_complexity Low_complexity 2 116 0 5 1655 334 313 84 17 chr6 140291287 140291466 -9225571 - MER21B LTR ERV1 -309 554 364 5 1655 1016 300 37 34 chr6 140291526 140291847 -9225190 - MER21B LTR ERV1 -526 337 16 5 1655 742 272 52 38 chr6 140292905 140293249 -9223788 - RMER17C LTR ERVK -61 349 1 5 1655 849 84 0 8 chr6 140293318 140293438 -9223599 + B1_Mus1 SINE Alu 29 147 -1 5 1655 1498 190 33 36 chr6 140293668 140294028 -9223009 + ORR1D1 LTR MaLR 16 374 0 5 1655 281 303 0 13 chr6 140294577 140294654 -9222383 + ID4_ SINE ID 6 81 -2 5 1655 1814 122 88 13 chr6 140294884 140295190 -9221847 - ORR1A4 LTR MaLR 0 329 1 5 1655 446 227 200 0 chr6 140295339 140295449 -9221588 - RSINE1 SINE B4 -33 132 1 5 1655 639 300 104 67 chr6 140295904 140296279 -9220758 - Lx8 LINE L1 -17 7456 7068 5 1655 675 197 33 0 chr6 140296288 140296410 -9220627 + B1_Mur1 SINE Alu 22 147 -2 5 1655 570 261 31 13 chr6 140296893 140297052 -9219985 + RSINE1 SINE B4 4 165 0 5 1655 22 35 0 0 chr6 140297073 140297102 -9219935 + AT_rich Low_complexity Low_complexity 1 29 0 5 1655 21 0 0 0 chr6 140297154 140297175 -9219862 + AT_rich Low_complexity Low_complexity 1 21 0 6 1655 264 30 0 0 chr6 140297858 140297891 -9219146 + (AGGGGG)n Simple_repeat Simple_repeat 6 38 0 6 1655 927 200 137 0 chr6 140298140 140298330 -9218707 + B3 SINE B2 1 216 0 6 1655 5608 124 26 25 chr6 140298337 140299273 -9217764 + Lx2 LINE L1 6060 6996 -1 6 1655 279 197 0 16 chr6 140299469 140299531 -9217506 - B1_Mur1 SINE Alu -6 143 83 6 1655 261 167 0 0 chr6 140299926 140299980 -9217057 + CT-rich Low_complexity Low_complexity 2 55 0 6 1655 207 0 0 0 chr6 140300493 140300516 -9216521 + (CAA)n Simple_repeat Simple_repeat 1 23 0 6 1655 542 218 81 22 chr6 140300648 140300773 -9216264 + B1_Mur1 SINE Alu 5 137 -12 6 1655 402 74 0 0 chr6 140300773 140300827 -9216210 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6 1655 185 43 62 42 chr6 140300937 140300985 -9216052 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1655 754 220 14 23 chr6 140301040 140301240 -9215797 + B3 SINE B2 1 195 0 6 1655 251 250 0 0 chr6 140301256 140301312 -9215725 - Arthur1 DNA Tip100 -2885 1062 1007 6 1655 348 290 29 29 chr6 140301442 140301545 -9215492 - RSINE1 SINE B4 -60 105 3 6 1655 253 301 55 0 chr6 140301712 140301785 -9215252 - FLAM_A SINE Alu -218 77 1 6 1655 480 356 153 8 chr6 140301911 140302296 -9214741 - Arthur1 DNA Tip100 -3191 756 316 6 1655 284 133 41 11 chr6 140302411 140302477 -9214560 - B1F SINE Alu -1 148 54 6 1655 189 0 0 0 chr6 140302875 140302896 -9214141 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1655 275 222 14 14 chr6 140302989 140303062 -9213975 + B3A SINE B2 7 79 -119 6 1655 316 290 62 37 chr6 140303220 140303381 -9213656 + MLT1A0 LTR MaLR 3 167 -198 6 1655 607 259 61 45 chr6 140303614 140303812 -9213225 - B3A SINE B2 -15 201 1 6 1655 570 321 24 42 chr6 140304286 140304452 -9212585 + RSINE1 SINE B4 3 165 0 6 1655 607 192 5 43 chr6 140304454 140304639 -9212398 + (CATA)n Simple_repeat Simple_repeat 1 178 0 6 1655 328 333 68 0 chr6 140305396 140305513 -9211524 - PB1 SINE Alu -2 125 1 6 1655 473 253 83 36 chr6 140305570 140305738 -9211299 - B3A SINE B2 -19 179 4 6 1655 372 265 114 30 chr6 140306175 140306377 -9210660 + L1MC4 LINE L1 6110 6328 -1554 6 1655 601 241 116 38 chr6 140306512 140306831 -9210206 + L1MC4 LINE L1 6729 7072 -970 6 1655 556 254 34 34 chr6 140307222 140307401 -9209636 + B3A SINE B2 4 182 -16 6 1655 501 266 43 80 chr6 140307450 140307638 -9209399 + ID_B1 SINE B4 3 183 -41 6 1655 594 143 41 0 chr6 140309095 140309242 -9207795 + (TAGA)n Simple_repeat Simple_repeat 2 154 0 6 1655 521 185 8 232 chr6 140310138 140310384 -9206653 + B3A SINE B2 2 192 -6 6 1655 2332 184 7 7 chr6 140310470 140310891 -9206146 - MTC LTR MaLR 0 421 1 6 1655 441 0 0 0 chr6 140311402 140311451 -9205586 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1655 270 0 0 0 chr6 140311451 140311480 -9205557 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1655 785 251 23 56 chr6 140311586 140311801 -9205236 + ID_B1 SINE B4 5 212 -12 6 1655 1450 48 32 11 chr6 140312040 140312229 -9204808 + B2_Mm1t SINE B2 1 193 0 6 1655 22 0 0 0 chr6 140312229 140312251 -9204786 + AT_rich Low_complexity Low_complexity 1 22 0 6 1655 222 150 0 0 chr6 140312536 140312576 -9204461 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1655 611 290 34 5 chr6 140312618 140312826 -9204211 + B3 SINE B2 1 214 -2 6 1655 438 211 21 0 chr6 140312829 140312924 -9204113 + RSINE1 SINE B4 5 101 -64 6 1655 518 258 80 8 chr6 140312994 140313119 -9203918 + B1_Mur1 SINE Alu 4 137 -12 6 1655 377 285 48 62 chr6 140313119 140313135 -9203902 + ID_B1 SINE B4 85 223 -1 6 1655 205 237 0 0 chr6 140313135 140313173 -9203864 + polypurine Low_complexity Low_complexity 1 38 0 6 1655 348 24 0 0 chr6 140313204 140313245 -9203792 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1655 325 300 179 30 chr6 140313249 140313383 -9203654 - B3A SINE B2 -39 159 6 6 1655 1118 251 68 24 chr6 140313444 140313783 -9203254 + ORR1E LTR MaLR 1 354 -5 6 1655 502 211 78 0 chr6 140313966 140314094 -9202943 + B4 SINE B4 2 139 -153 6 1655 470 214 35 48 chr6 140314141 140314269 -9202768 + B3A SINE B2 42 165 -33 6 1655 1382 221 88 3 chr6 140314324 140314665 -9202372 - ORR1D2 LTR MaLR 0 370 1 6 1655 213 280 0 0 chr6 140314672 140314722 -9202315 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1655 2357 270 91 41 chr6 140315344 140315422 -9201615 + Lx8 LINE L1 6506 6584 -889 6 1655 216 0 0 0 chr6 140315422 140315446 -9201591 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1655 2357 270 91 41 chr6 140315446 140316287 -9200750 + Lx8 LINE L1 6585 7470 -3 6 1655 392 309 9 9 chr6 140316348 140316459 -9200578 + RSINE1 SINE B4 55 165 0 6 1655 391 175 19 19 chr6 140316474 140316579 -9200458 + (CATATA)n Simple_repeat Simple_repeat 2 106 0 6 1655 282 95 0 0 chr6 140316623 140316665 -9200372 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 6 1655 839 164 14 7 chr6 140317850 140317997 -9199040 + B1_Mur4 SINE Alu 2 149 -1 6 1655 647 286 0 0 chr6 140318050 140318197 -9198840 - RSINE1 SINE B4 0 165 19 6 1655 397 258 41 8 chr6 140318406 140318527 -9198510 - MER58C DNA MER1_type -65 150 26 6 1655 695 319 150 17 chr6 140318554 140319237 -9197800 + L1ME3A LINE L1 3314 4082 -2064 6 1655 369 131 0 0 chr6 140319310 140319371 -9197666 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 6 1655 1680 158 4 0 chr6 140319496 140319769 -9197268 - ORR1B1 LTR MaLR -8 386 113 6 1655 297 0 0 0 chr6 140319860 140319893 -9197144 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1655 487 236 18 0 chr6 140319911 140320021 -9197016 - RSINE1 SINE B4 -51 114 3 6 1655 22 35 0 0 chr6 140320147 140320176 -9196861 + AT_rich Low_complexity Low_complexity 1 29 0 6 1655 383 193 0 33 chr6 140320256 140320347 -9196690 + B1_Mus1 SINE Alu 40 127 -21 6 1655 369 255 11 0 chr6 140320368 140320462 -9196575 + L1ME3A LINE L1 4516 4610 -1536 6 1655 315 242 62 21 chr6 140320685 140320782 -9196255 - PB1D10 SINE Alu -1 116 16 6 1655 486 0 0 0 chr6 140320883 140320937 -9196100 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1655 299 288 57 78 chr6 140320937 140321182 -9195855 + L1ME3A LINE L1 4852 5091 -1055 6 1655 460 228 15 5 chr6 140321578 140321689 -9195348 + B3A SINE B2 41 155 -61 6 1655 438 143 0 0 chr6 140321696 140321787 -9195250 + (TC)n Simple_repeat Simple_repeat 2 92 0 6 1655 459 0 0 0 chr6 140321839 140321890 -9195147 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 1655 308 247 45 0 chr6 140322031 140322120 -9194917 + PB1D7 SINE Alu 8 100 -20 6 1655 237 224 0 0 chr6 140322127 140322185 -9194852 + (TAA)n Simple_repeat Simple_repeat 2 59 0 6 1655 367 305 45 77 chr6 140322490 140322710 -9194327 + L1ME3A LINE L1 5734 5946 -227 6 1655 347 281 21 56 chr6 140323356 140323499 -9193538 + B4 SINE B4 1 138 -154 6 1655 223 265 24 0 chr6 140323635 140323718 -9193319 + (TTTG)n Simple_repeat Simple_repeat 2 86 0 6 1655 729 275 10 26 chr6 140323972 140324166 -9192871 - ID_B1 SINE B4 0 224 34 6 1655 326 253 72 0 chr6 140324260 140324343 -9192694 - RSINE1 SINE B4 -60 105 17 6 1655 405 162 0 0 chr6 140324531 140324642 -9192395 + (TA)n Simple_repeat Simple_repeat 1 111 0 6 1655 1046 198 5 28 chr6 140324690 140324908 -9192129 - B3 SINE B2 0 216 4 6 1655 1653 142 56 92 chr6 140325037 140325395 -9191642 + ORR1B1 LTR MaLR 42 386 -8 6 1655 528 77 0 0 chr6 140326399 140326477 -9190560 + (TATG)n Simple_repeat Simple_repeat 4 81 0 6 1655 333 0 0 0 chr6 140326495 140326532 -9190505 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1655 374 231 37 0 chr6 140327241 140327349 -9189688 - B1F SINE Alu 0 149 38 6 1655 435 182 81 0 chr6 140327435 140327534 -9189503 + PB1D9 SINE Alu 9 115 -5 6 1655 523 224 11 7 chr6 140327533 140327606 -9189431 + B3 SINE B2 82 156 -60 6 1655 5608 111 26 121 chr6 140327606 140328664 -9188373 - RMER17B LTR ERVK 0 958 1 6 1655 523 216 0 9 chr6 140328664 140328715 -9188322 + B3 SINE B2 157 207 -9 6 1655 889 266 31 17 chr6 140328740 140329031 -9188006 + L1_Mur3 LINE L1 2480 2774 -3106 6 1655 515 217 35 21 chr6 140329043 140329184 -9187853 + Lx7 LINE L1 5686 5828 -1868 6 1655 1381 171 39 8 chr6 140329192 140329446 -9187591 - ORR1B1 LTR MaLR 0 394 133 6 1655 236 239 45 0 chr6 140330424 140330491 -9186546 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 6 1655 229 219 31 15 chr6 140330538 140330603 -9186434 + (TA)n Simple_repeat Simple_repeat 2 67 0 6 1655 233 185 77 0 chr6 140330650 140330715 -9186322 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 6 1655 209 200 86 0 chr6 140330762 140330832 -9186205 + (CATATA)n Simple_repeat Simple_repeat 6 81 0 6 1655 548 194 291 50 chr6 140330998 140331177 -9185860 - URR1A DNA MER1_type 0 226 5 6 1655 491 291 14 21 chr6 140331184 140331328 -9185709 + ID_B1 SINE B4 79 221 -3 6 1655 640 260 49 15 chr6 140331792 140331995 -9185042 + MLT1C LTR MaLR 252 461 -6 6 1655 297 118 0 0 chr6 140332454 140332505 -9184532 + (T)n Simple_repeat Simple_repeat 1 51 0 6 1655 694 312 23 18 chr6 140333495 140333714 -9183323 - ID_B1 SINE B4 -4 220 1 6 1655 546 296 75 40 chr6 140334321 140334599 -9182438 - B4A SINE B4 -3 289 2 6 1655 638 210 22 0 chr6 140335140 140335278 -9181759 - ID_B1 SINE B4 -1 223 83 6 1655 357 280 78 62 chr6 140335515 140335694 -9181343 - B3A SINE B2 -16 182 1 6 1655 755 178 157 35 chr6 140336124 140336322 -9180715 + URR1A DNA MER1_type 5 226 0 6 1655 621 214 0 0 chr6 140337077 140337236 -9179801 + (TG)n Simple_repeat Simple_repeat 2 160 0 6 1655 484 222 0 23 chr6 140337241 140337412 -9179625 + (TATG)n Simple_repeat Simple_repeat 2 168 0 6 1655 200 227 0 29 chr6 140337423 140337491 -9179546 + (TATG)n Simple_repeat Simple_repeat 4 69 0 6 1655 3001 51 50 13 chr6 140337603 140337999 -9179038 + IAPLTR2a LTR ERVK 1 411 0 6 1655 411 302 9 0 chr6 140338513 140338629 -9178408 + ID_B1 SINE B4 77 193 -31 7 1655 218 204 20 0 chr6 140338657 140338706 -9178331 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1655 345 311 45 67 chr6 140338725 140338904 -9178133 - B4 SINE B4 -8 284 110 7 1655 948 211 15 5 chr6 140339343 140339543 -9177494 + B3 SINE B2 1 202 -14 7 1655 566 218 20 143 chr6 140339761 140339964 -9177073 + B3A SINE B2 5 182 -16 7 1655 982 195 5 50 chr6 140340017 140340238 -9176799 + B3 SINE B2 1 211 -5 7 1655 405 102 0 0 chr6 140340594 140340653 -9176384 + (CCTG)n Simple_repeat Simple_repeat 4 62 0 7 1655 253 254 0 60 chr6 140340668 140340735 -9176302 - ID_B1 SINE B4 -16 208 146 7 1655 208 0 0 59 chr6 140340816 140340850 -9176187 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 7 1655 3052 50 53 0 chr6 140340975 140341353 -9175684 + MTB LTR MaLR 3 400 0 7 1655 936 149 101 17 chr6 140341843 140342021 -9175016 + B2_Mm1t SINE B2 1 193 0 7 1655 676 239 0 0 chr6 140342111 140342249 -9174788 + ID_B1 SINE B4 80 217 -7 7 1655 580 240 0 0 chr6 140342271 140342395 -9174642 + B1F2 SINE Alu 20 143 -6 7 1655 543 179 28 0 chr6 140343402 140343508 -9173529 + PB1D9 SINE Alu 10 118 -2 7 1655 1152 95 0 0 chr6 140343518 140343686 -9173351 + (GAA)n Simple_repeat Simple_repeat 3 170 0 7 1655 371 285 9 61 chr6 140343759 140343923 -9173114 + RSINE1 SINE B4 1 160 -5 7 1655 183 42 0 0 chr6 140343953 140343977 -9173060 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1655 993 185 22 5 chr6 140344757 140344942 -9172095 + Lx9 LINE L1 7103 7290 -354 7 1655 229 155 33 33 chr6 140344947 140345007 -9172030 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 7 1655 719 153 31 19 chr6 140345015 140345175 -9171862 + Lx9 LINE L1 7482 7643 -1 7 1655 208 28 54 27 chr6 140345912 140345949 -9171088 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 7 1655 664 174 68 0 chr6 140345967 140346099 -9170938 - B1_Mur1 SINE Alu 0 149 9 7 1655 636 237 32 26 chr6 140346133 140346289 -9170748 - RSINE1 SINE B4 -6 159 3 7 1655 486 49 0 0 chr6 140348224 140348285 -9168752 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 1655 306 0 0 0 chr6 140348285 140348318 -9168719 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1655 311 269 154 85 chr6 140348838 140349098 -9167939 - B4 SINE B4 -12 280 3 7 1655 369 243 47 37 chr6 140349325 140349432 -9167605 - MIRc SINE MIR 0 268 161 7 1655 306 233 89 0 chr6 140349731 140349821 -9167216 - Lx8 LINE L1 -5 7468 7371 7 1655 434 326 21 14 chr6 140350011 140350154 -9166883 + RSINE1 SINE B4 2 145 -20 7 1655 666 37 0 0 chr6 140350155 140350236 -9166801 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1655 1191 89 11 11 chr6 140350264 140350445 -9166592 + B2_Mm2 SINE B2 14 194 -1 7 1655 809 163 14 0 chr6 140350452 140350593 -9166444 + B1_Mur3 SINE Alu 1 143 -6 7 1655 583 171 34 0 chr6 140350703 140350820 -9166217 - RSINE1 SINE B4 -42 123 3 7 1655 306 233 89 0 chr6 140350872 140350962 -9166075 - Lx8 LINE L1 -5 7468 7371 7 1655 638 206 51 7 chr6 140351674 140351811 -9165226 + ID_B1 SINE B4 82 224 0 7 1655 559 274 96 70 chr6 140351829 140351911 -9165126 + B4 SINE B4 10 96 -196 7 1655 1202 68 0 0 chr6 140351911 140352058 -9164979 + B1_Mus2 SINE Alu 1 147 0 7 1655 559 274 96 70 chr6 140352058 140352246 -9164791 + B4 SINE B4 97 287 -5 7 1655 207 246 0 30 chr6 140352250 140352317 -9164720 + (CATA)n Simple_repeat Simple_repeat 4 68 0 7 1655 912 191 42 11 chr6 140352348 140352539 -9164498 + B3 SINE B2 8 204 -12 7 1655 2617 117 2 5 chr6 140352542 140352947 -9164090 + MTC LTR MaLR 10 413 -8 7 1655 408 269 16 16 chr6 140353311 140353424 -9163613 + RSINE1 SINE B4 3 115 -50 7 1655 598 222 20 20 chr6 140353424 140353571 -9163466 - RMER5 LTR ERV1 0 534 388 7 1655 659 257 6 16 chr6 140353616 140353798 -9163239 - B3 SINE B2 -7 209 30 7 1655 1135 88 0 0 chr6 140353798 140353945 -9163092 + B1_Mus1 SINE Alu 2 148 0 7 1655 839 53 0 9 chr6 140354084 140354199 -9162838 - B1_Mus1 SINE Alu -1 147 34 7 1655 682 288 58 123 chr6 140354198 140354579 -9162458 - RMER5 LTR ERV1 -178 356 1 7 1655 799 212 97 10 chr6 140354893 140355088 -9161949 + B3 SINE B2 3 214 -2 7 1655 585 0 0 0 chr6 140355568 140355633 -9161404 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1655 395 318 6 72 chr6 140356089 140356255 -9160782 + B3A SINE B2 2 156 -60 7 1655 333 118 0 0 chr6 140356327 140356378 -9160659 + (CAT)n Simple_repeat Simple_repeat 1 51 0 7 1655 362 345 0 0 chr6 140356380 140356493 -9160544 - B1F2 SINE Alu -13 136 24 7 1655 1299 93 6 6 chr6 140356531 140356714 -9160323 - B2_Mm2 SINE B2 -11 184 2 7 1655 736 206 14 14 chr6 140356729 140356877 -9160160 - B3 SINE B2 -1 215 68 7 1655 211 274 29 0 chr6 140357096 140357198 -9159839 + CT-rich Low_complexity Low_complexity 3 107 0 7 1655 1074 224 45 42 chr6 140357233 140357522 -9159515 - B4 SINE B4 -1 291 2 7 1655 2742 157 164 4 chr6 140358374 140358900 -9158137 + RMER19C LTR ERVK 2 611 0 7 1655 258 116 0 0 chr6 140358900 140358943 -9158094 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1655 385 310 33 52 chr6 140358957 140359110 -9157927 - RSINE1 SINE B4 -13 152 3 7 1655 712 323 22 5 chr6 140359245 140359469 -9157568 + Lx8 LINE L1 7137 7364 -109 7 1655 215 260 24 72 chr6 140359627 140359710 -9157327 - L2b LINE L2 0 3387 3308 7 1655 636 132 0 19 chr6 140359884 140359992 -9157045 - B1_Mur4 SINE Alu -2 148 43 7 1655 441 156 0 0 chr6 140360073 140360150 -9156887 + (TCTCTG)n Simple_repeat Simple_repeat 1 77 0 7 1655 241 220 0 48 chr6 140360152 140360214 -9156823 - B1_Mur4 SINE Alu -90 60 2 7 1655 601 261 7 7 chr6 140360955 140361098 -9155939 - B1_Mur1 SINE Alu -6 143 1 7 1655 260 268 14 40 chr6 140361865 140361939 -9155098 + ID4 SINE ID 2 73 -10 7 1655 946 235 60 26 chr6 140362814 140363081 -9153956 - ORR1E LTR MaLR -4 355 80 7 1655 638 274 44 13 chr6 140363098 140363257 -9153780 + B3 SINE B2 2 165 -51 7 1655 180 0 0 0 chr6 140363257 140363277 -9153760 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1655 571 299 63 5 chr6 140364066 140364271 -9152766 - ID_B1 SINE B4 0 224 8 7 1655 197 65 0 31 chr6 140364513 140364545 -9152492 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1655 213 65 0 0 chr6 140364923 140364954 -9152083 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1655 836 298 29 4 chr6 140364958 140365234 -9151803 - B4A SINE B4 -8 284 2 7 1655 358 243 14 0 chr6 140365537 140365611 -9151426 + ID_B1 SINE B4 141 215 -9 7 1655 707 148 8 0 chr6 140365661 140365783 -9151254 + B3 SINE B2 2 124 -92 7 1655 498 152 0 52 chr6 140365839 140365936 -9151101 + B3 SINE B2 1 92 -124 7 1655 416 193 18 35 chr6 140366043 140366156 -9150881 - B1_Mus1 SINE Alu 0 148 38 7 1655 1727 186 62 35 chr6 140366262 140366630 -9150407 + ORR1C1 LTR MaLR 1 378 0 7 1655 333 303 0 0 chr6 140366761 140366850 -9150187 + PB1D7 SINE Alu 31 119 -1 7 1655 187 31 62 0 chr6 140366854 140366886 -9150151 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 7 1655 482 224 103 8 chr6 140366922 140367048 -9149989 - B1_Mur1 SINE Alu -2 147 10 7 1655 21 0 0 0 chr6 140367050 140367071 -9149966 + AT_rich Low_complexity Low_complexity 1 21 0 7 1655 203 237 0 0 chr6 140367072 140367110 -9149927 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 7 1655 889 225 6 0 chr6 140367117 140367290 -9149747 - B3 SINE B2 -39 177 4 7 1655 380 329 54 7 chr6 140367558 140367672 -9149365 - ID_B1 SINE B4 -70 154 40 7 1655 207 0 0 0 chr6 140367672 140367695 -9149342 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1655 380 329 54 7 chr6 140367695 140367727 -9149310 - ID SINE ID -185 39 1 7 1655 2486 128 73 53 chr6 140368044 140368481 -9148556 + RLTR41 LTR ERV1 1 446 0 7 1655 606 203 161 0 chr6 140369251 140369394 -9147643 + B3 SINE B2 1 166 -50 7 1655 269 241 54 27 chr6 140369474 140369585 -9147452 - RSINE1 SINE B4 -43 122 9 7 1655 292 259 12 12 chr6 140369800 140369886 -9147151 - RSINE1 SINE B4 -27 138 53 7 1655 747 184 21 0 chr6 140370481 140370622 -9146415 + B1_Mur2 SINE Alu 5 148 -1 7 1655 209 79 79 0 chr6 140370623 140370661 -9146376 + (CGAAA)n Simple_repeat Simple_repeat 3 43 0 7 1655 182 91 0 29 chr6 140370707 140370741 -9146296 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1655 186 297 68 19 chr6 140371395 140371498 -9145539 + MIRb SINE MIR 96 203 -65 7 1655 201 337 48 38 chr6 140371815 140371920 -9145117 + MIR SINE MIR 51 156 -106 7 1655 198 0 0 0 chr6 140372426 140372448 -9144589 + (CGAG)n Simple_repeat Simple_repeat 1 22 0 7 1655 24 0 0 0 chr6 140372450 140372474 -9144563 + GC_rich Low_complexity Low_complexity 1 24 0 7 1655 41 66 0 0 chr6 140372509 140372585 -9144452 + GC_rich Low_complexity Low_complexity 1 76 0 7 1655 252 0 0 0 chr6 140372595 140372623 -9144414 + (CTCG)n Simple_repeat Simple_repeat 4 31 0 7 1655 182 31 0 111 chr6 140372637 140372673 -9144364 + (CGG)n Simple_repeat Simple_repeat 3 34 0 7 1655 25 90 0 0 chr6 140372781 140372848 -9144189 + GC_rich Low_complexity Low_complexity 1 67 0 7 1655 361 255 118 0 chr6 140376447 140376549 -9140488 - PB1D9 SINE Alu 0 120 7 7 1656 25 51 0 0 chr6 140378270 140378309 -9138728 + AT_rich Low_complexity Low_complexity 1 39 0 7 1656 522 216 0 16 chr6 140379197 140379324 -9137713 - B1F1 SINE Alu -7 142 18 7 1656 980 192 20 25 chr6 140379656 140379859 -9137178 - B3 SINE B2 -14 202 1 8 1656 902 180 44 92 chr6 140380015 140380242 -9136795 + B3 SINE B2 1 216 0 8 1656 1414 75 0 16 chr6 140380328 140380517 -9136520 + B2_Mm2 SINE B2 2 187 -8 8 1656 257 320 7 96 chr6 140381083 140381218 -9135819 - RSINE1 SINE B4 -35 130 8 8 1656 272 313 91 0 chr6 140382199 140382298 -9134739 + PB1D10 SINE Alu 9 116 -1 8 1656 265 282 38 13 chr6 140382393 140382472 -9134565 - ORR1E LTR MaLR -278 81 1 8 1656 1246 27 0 7 chr6 140382557 140382704 -9134333 + B1_Mus1 SINE Alu 2 147 -1 8 1656 450 296 57 28 chr6 140382723 140382904 -9134133 + B3A SINE B2 28 213 -3 8 1656 863 45 0 9 chr6 140382927 140383040 -9133997 + (GAAA)n Simple_repeat Simple_repeat 2 113 0 8 1656 31 0 0 0 chr6 140384107 140384138 -9132899 + AT_rich Low_complexity Low_complexity 1 31 0 8 1656 283 262 243 27 chr6 140384907 140385244 -9131793 - L1MA9 LINE L1 -42 6270 5861 8 1656 1190 208 142 13 chr6 140385255 140385571 -9131466 + ORR1D1 LTR MaLR 18 374 0 8 1656 327 181 0 0 chr6 140385788 140385860 -9131177 + (TA)n Simple_repeat Simple_repeat 1 72 0 8 1656 645 294 74 5 chr6 140388003 140388205 -9128832 + MER44D DNA MER2_type 10 225 -480 8 1656 591 294 65 6 chr6 140388214 140388382 -9128655 + B3 SINE B2 25 202 -14 8 1656 448 253 46 13 chr6 140389954 140389965 -9127072 - MER2 DNA MER2_type -108 237 227 8 1656 360 0 0 0 chr6 140389965 140390005 -9127032 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1656 448 253 46 13 chr6 140390005 140390145 -9126892 - MER2 DNA MER2_type -119 226 82 8 1656 234 227 45 15 chr6 140391102 140391169 -9125868 - ORR1D1 LTR MaLR -5 369 301 8 1656 565 209 30 44 chr6 140391243 140391378 -9125659 - B1F2 SINE Alu -13 136 4 8 1656 612 219 0 0 chr6 140391653 140391772 -9125265 - PB1D9 SINE Alu 0 120 2 8 1656 387 283 48 40 chr6 140391819 140391944 -9125093 + B3A SINE B2 38 163 -35 8 1656 244 247 59 79 chr6 140391951 140392052 -9124985 - L1MC2 LINE L1 -6 6338 6240 8 1656 773 247 201 8 chr6 140392399 140392787 -9124250 - L1MA5 LINE L1 -23 6277 5815 8 1656 644 262 58 0 chr6 140393110 140393282 -9123755 + B3A SINE B2 1 182 -16 8 1656 213 158 0 0 chr6 140394374 140394412 -9122625 - B1F SINE Alu -36 113 76 8 1656 24 53 0 0 chr6 140394830 140394868 -9122169 + AT_rich Low_complexity Low_complexity 1 38 0 8 1656 1501 63 0 20 chr6 140395497 140395692 -9121345 + B2_Mm1a SINE B2 2 192 -1 8 1656 283 28 0 0 chr6 140396524 140396560 -9120477 + B1_Mus1 SINE Alu 25 60 -88 8 1656 342 0 0 0 chr6 140396873 140396911 -9120126 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1656 303 289 135 40 chr6 140397417 140397565 -9119472 - RSINE1 SINE B4 -2 163 2 8 1656 1388 74 25 31 chr6 140397725 140397921 -9119116 - B2_Mm2 SINE B2 0 195 1 8 1656 624 229 59 14 chr6 140398101 140398421 -9118616 - MTD LTR MaLR -14 407 5 8 1656 21 36 0 0 chr6 140398442 140398470 -9118567 + AT_rich Low_complexity Low_complexity 1 28 0 8 1656 1230 42 0 0 chr6 140398575 140398717 -9118320 - B1_Mus1 SINE Alu -5 143 2 8 1656 204 40 0 0 chr6 140398724 140398749 -9118288 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1656 3310 42 3 0 chr6 140399850 140400234 -9116803 - IAPEY_LTR LTR ERVK 0 385 1 8 1656 655 206 223 6 chr6 140401706 140401872 -9115165 - B3 SINE B2 -11 205 4 8 1656 515 227 48 119 chr6 140402186 140402396 -9114641 + B3A SINE B2 3 197 -1 8 1656 504 223 216 0 chr6 140402411 140402559 -9114478 - B3A SINE B2 -18 180 1 8 1656 324 48 0 0 chr6 140402871 140402913 -9114124 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1656 357 125 124 93 chr6 140402913 140403010 -9114027 + PB1D9 SINE Alu 12 111 -9 8 1656 220 350 12 0 chr6 140403707 140403787 -9113250 - RSINE1 SINE B4 -17 148 68 8 1656 26 0 0 0 chr6 140403841 140403867 -9113170 + AT_rich Low_complexity Low_complexity 1 26 0 8 1656 236 156 44 0 chr6 140405121 140405166 -9111871 + ID_B1 SINE B4 170 216 -8 8 1656 422 291 103 15 chr6 140406185 140406321 -9110716 + RSINE1 SINE B4 4 151 -14 8 1656 1319 46 63 0 chr6 140406333 140406508 -9110529 - B2_Mm2 SINE B2 -9 186 1 8 1656 5056 73 40 25 chr6 140406833 140407603 -9109434 - RLTR13C2 LTR ERVK -26 782 1 8 1656 8695 19 1 0 chr6 140407789 140408746 -9108291 + RLTR13A2 LTR ERVK 1 958 0 8 1656 386 237 178 0 chr6 140408747 140408865 -9108172 - B1F SINE Alu 0 149 11 8 1656 1820 232 90 54 chr6 140410143 140411040 -9105997 + RMER17B LTR ERVK 3 899 -9 8 1656 23 33 0 0 chr6 140411161 140411191 -9105846 + AT_rich Low_complexity Low_complexity 1 30 0 8 1656 217 234 78 0 chr6 140411267 140411331 -9105706 + ID2 SINE ID 2 70 -13 8 1656 760 221 0 14 chr6 140411764 140411911 -9105126 - B1_Mm SINE Alu -1 146 2 8 1656 25 0 0 0 chr6 140411971 140411996 -9105041 + AT_rich Low_complexity Low_complexity 1 25 0 8 1656 269 252 2 96 chr6 140412011 140412126 -9104911 + BC1_Mm scRNA scRNA 1 105 -47 8 1656 269 261 0 11 chr6 140412137 140412226 -9104811 + L1M4 LINE L1 5022 5109 -1037 8 1656 839 176 35 74 chr6 140412504 140412706 -9104331 + B2_Mm2 SINE B2 2 195 0 8 1656 355 221 54 0 chr6 140416515 140416635 -9100402 - ID_B1 SINE B4 -153 139 2 8 1656 279 313 104 0 chr6 140416658 140416792 -9100245 - B1F SINE Alu 0 149 2 8 1656 654 173 62 95 chr6 140417029 140417208 -9099829 + B3A SINE B2 24 196 -2 8 1656 748 279 19 7 chr6 140417229 140417435 -9099602 + B3A SINE B2 1 210 -6 8 1656 637 206 18 24 chr6 140417613 140417788 -9099249 - B3 SINE B2 -9 184 16 8 1656 505 243 106 7 chr6 140418336 140418477 -9098560 - RSINE1 SINE B4 -7 158 4 8 1656 260 322 30 106 chr6 140418504 140418636 -9098401 + B1F2 SINE Alu 8 129 -20 8 1656 763 302 50 32 chr6 140418654 140418931 -9098106 + B4A SINE B4 7 288 -4 8 1656 608 282 13 53 chr6 140419809 140420034 -9097003 + B3A SINE B2 1 216 0 8 1656 346 301 51 6 chr6 140420662 140420819 -9096218 - RSINE1 SINE B4 0 165 2 8 1656 251 263 172 0 chr6 140421713 140421812 -9095225 + PB1D10 SINE Alu 2 117 0 8 1656 321 176 31 69 chr6 140421854 140422013 -9095024 + CT-rich Low_complexity Low_complexity 3 155 0 8 1656 579 77 38 19 chr6 140422265 140422371 -9094666 + (CATA)n Simple_repeat Simple_repeat 3 110 0 8 1656 850 168 7 13 chr6 140422868 140423019 -9094018 + B1_Mur4 SINE Alu 1 150 0 8 1656 673 103 89 225 chr6 140423281 140423494 -9093543 + B2_Mm1t SINE B2 1 184 -9 8 1656 1726 21 0 0 chr6 140423539 140423731 -9093306 + B2_Mm1a SINE B2 1 192 -1 8 1656 22 0 0 0 chr6 140424059 140424081 -9092956 + AT_rich Low_complexity Low_complexity 1 22 0 8 1656 244 310 112 26 chr6 140424345 140424461 -9092576 + RSINE1 SINE B4 7 132 -33 8 1656 524 264 49 33 chr6 140424596 140424780 -9092257 + B4A SINE B4 106 292 0 8 1656 21 0 0 0 chr6 140424907 140424928 -9092109 + AT_rich Low_complexity Low_complexity 1 21 0 8 1656 429 54 0 0 chr6 140425544 140425600 -9091437 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1656 1094 263 96 49 chr6 140427212 140427887 -9089150 + L1MA5A LINE L1 5127 5875 -422 8 1656 761 302 92 43 chr6 140428260 140428811 -9088226 + L1MA4 LINE L1 5270 5832 -468 8 1656 401 270 139 0 chr6 140429146 140429283 -9087754 + MER58A DNA MER1_type 36 191 -33 8 1656 679 232 171 0 chr6 140429334 140429515 -9087522 - B3 SINE B2 0 216 5 8 1656 191 114 0 22 chr6 140429721 140429766 -9087271 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 8 1656 425 69 9 0 chr6 140429801 140429865 -9087172 - B2_Mm2 SINE B2 -102 114 47 8 1656 1285 111 0 32 chr6 140429877 140430064 -9086973 - B2_Mm2 SINE B2 -13 182 2 8 1656 290 295 0 0 chr6 140430597 140430658 -9086379 + ID_B1 SINE B4 83 143 -81 8 1656 268 296 12 47 chr6 140430598 140430683 -9086354 + PB1D7 SINE Alu 3 84 -36 8 1656 1747 180 67 17 chr6 140430683 140431028 -9086009 + RMER1B Other Other 705 1066 0 8 1656 1057 300 47 30 chr6 140431138 140431328 -9085709 - ORR1D-int LTR MaLR -322 1048 861 8 1656 621 0 0 0 chr6 140431328 140431397 -9085640 + (TC)n Simple_repeat Simple_repeat 1 69 0 8 1656 1057 300 47 30 chr6 140431397 140431608 -9085429 - ORR1D-int LTR MaLR -510 860 642 8 1656 239 29 0 0 chr6 140431608 140431642 -9085395 - L1Md_T LINE L1 -3 6579 6546 8 1656 195 326 61 0 chr6 140432815 140432913 -9084124 + L2a LINE L2 2919 3022 -404 8 1656 569 192 85 39 chr6 140433810 140433940 -9083097 - B3 SINE B2 -4 212 77 8 1656 427 268 147 0 chr6 140433955 140434112 -9082925 - B3A SINE B2 -18 180 1 8 1656 381 297 27 0 chr6 140436461 140436572 -9080465 + PB1D10 SINE Alu 1 114 -3 8 1656 186 174 0 0 chr6 140437130 140437176 -9079861 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1656 374 339 63 40 chr6 140437782 140437957 -9079080 - B3A SINE B2 -14 184 6 8 1656 303 203 0 0 chr6 140438074 140438138 -9078899 + GA-rich Low_complexity Low_complexity 1 64 0 8 1656 32 26 0 0 chr6 140438445 140438484 -9078553 + AT_rich Low_complexity Low_complexity 1 39 0 8 1656 275 247 117 0 chr6 140438534 140438611 -9078426 + PB1D9 SINE Alu 2 87 -33 8 1656 256 179 27 107 chr6 140438544 140438619 -9078418 + MT2B2 LTR ERVL 176 244 -340 9 1656 195 42 0 0 chr6 140438643 140438667 -9078370 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1656 251 151 38 0 chr6 140439148 140439201 -9077836 + B3A SINE B2 10 64 -134 9 1656 22 35 0 0 chr6 140440399 140440428 -9076609 + AT_rich Low_complexity Low_complexity 1 29 0 9 1656 324 0 0 0 chr6 140441222 140441258 -9075779 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 9 1656 21 71 0 0 chr6 140442203 140442245 -9074792 + AT_rich Low_complexity Low_complexity 1 42 0 9 1656 1069 141 5 30 chr6 140442325 140442523 -9074514 - B2_Mm2 SINE B2 -2 193 1 9 1656 324 217 207 0 chr6 140442572 140442717 -9074320 - B3 SINE B2 0 216 42 9 1656 717 12 0 0 chr6 140442761 140442843 -9074194 + (GA)n Simple_repeat Simple_repeat 1 82 0 9 1656 326 268 37 0 chr6 140442925 140443007 -9074030 - PB1D10 SINE Alu -7 110 26 9 1656 322 279 116 0 chr6 140442941 140443027 -9074010 - ID_B1 SINE B4 -52 172 77 9 1656 494 296 52 0 chr6 140443119 140443254 -9073783 + ID_B1 SINE B4 82 223 -1 9 1656 24 32 0 0 chr6 140443258 140443289 -9073748 + AT_rich Low_complexity Low_complexity 1 31 0 9 1656 356 40 20 0 chr6 140443289 140443339 -9073698 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1656 593 292 25 6 chr6 140443348 140443510 -9073527 - B3A SINE B2 -32 166 2 9 1656 1385 175 47 7 chr6 140443828 140444104 -9072933 - ORR1C1 LTR MaLR -8 370 84 9 1656 823 181 179 11 chr6 140444443 140444622 -9072415 + B3 SINE B2 1 209 -7 9 1656 469 247 56 19 chr6 140445277 140445505 -9071532 + B4A SINE B4 4 292 0 9 1656 727 128 95 8 chr6 140446199 140446325 -9070712 + B1_Mur4 SINE Alu 14 150 0 9 1656 251 296 18 121 chr6 140447053 140447218 -9069819 + RSINE1 SINE B4 12 159 -6 9 1656 25 0 0 0 chr6 140447218 140447243 -9069794 + AT_rich Low_complexity Low_complexity 1 25 0 9 1656 228 191 0 0 chr6 140447265 140447307 -9069730 + PB1D9 SINE Alu 71 112 -8 9 1656 213 39 0 0 chr6 140447307 140447333 -9069704 + (CTA)n Simple_repeat Simple_repeat 1 26 0 9 1656 529 263 30 70 chr6 140447781 140447981 -9069056 - B3A SINE B2 -1 197 6 9 1656 230 282 12 49 chr6 140448276 140448358 -9068679 - BC1_Mm scRNA scRNA -72 80 2 9 1656 411 291 93 9 chr6 140448478 140448693 -9068344 + B4A SINE B4 2 234 -58 9 1656 393 331 7 22 chr6 140448781 140448917 -9068120 + B3 SINE B2 1 134 -82 9 1656 957 121 0 0 chr6 140448936 140449278 -9067759 + (TC)n Simple_repeat Simple_repeat 1 342 0 9 1656 1326 78 5 43 chr6 140449441 140449629 -9067408 + B2_Mm2 SINE B2 1 181 -14 9 1656 216 200 0 0 chr6 140449921 140449966 -9067071 + CT-rich Low_complexity Low_complexity 2 46 0 9 1656 1124 30 0 0 chr6 140451150 140451284 -9065753 - B1_Mus2 SINE Alu -13 134 1 9 1656 588 14 0 0 chr6 140451427 140451496 -9065541 + (TG)n Simple_repeat Simple_repeat 2 70 0 9 1656 404 261 0 98 chr6 140451812 140451935 -9065102 + PB1D10 SINE Alu 7 117 0 9 1656 450 0 0 0 chr6 140452717 140452767 -9064270 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 9 1656 1264 27 0 0 chr6 140453254 140453401 -9063636 - B1_Mus2 SINE Alu 0 147 1 9 1656 549 0 0 0 chr6 140453912 140453973 -9063064 + (TG)n Simple_repeat Simple_repeat 1 61 0 9 1656 240 59 0 0 chr6 140453979 140454013 -9063024 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 9 1656 713 236 35 35 chr6 140454911 140455109 -9061928 + B3A SINE B2 1 198 0 9 1656 576 0 0 0 chr6 140455362 140455426 -9061611 + (TG)n Simple_repeat Simple_repeat 2 65 0 9 1656 403 213 203 8 chr6 140455541 140455664 -9061373 - B1_Mur2 SINE Alu -2 147 1 9 1656 549 250 49 27 chr6 140456955 140457140 -9059897 - B3 SINE B2 -9 207 19 9 1656 289 297 69 10 chr6 140457203 140457305 -9059732 - RSINE1 SINE B4 -54 111 4 9 1656 351 0 0 0 chr6 140457586 140457625 -9059412 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1656 182 345 104 60 chr6 140457733 140457915 -9059122 + L2b LINE L2 3156 3345 -30 9 1656 936 103 28 0 chr6 140458337 140458482 -9058555 - B2_Mm1a SINE B2 -43 150 2 9 1656 237 252 103 0 chr6 140458697 140458804 -9058233 + MTEa LTR MaLR 260 377 -2 9 1656 1348 268 114 31 chr6 140458807 140459315 -9057722 + MTEa-int LTR MaLR 2 551 -1029 9 1656 567 178 8 63 chr6 140460017 140460143 -9056894 + PB1D9 SINE Alu 1 119 -1 9 1656 204 321 116 46 chr6 140460723 140460896 -9056141 - MIR SINE MIR -81 187 3 9 1656 3852 150 97 4 chr6 140461044 140461766 -9055271 - Lx5 LINE L1 -441 6609 5821 9 1656 1610 183 46 53 chr6 140461767 140462090 -9054947 + Lx5 LINE L1 6607 6927 -123 9 1656 270 0 0 0 chr6 140462631 140462661 -9054376 + (GGTTG)n Simple_repeat Simple_repeat 4 33 0 9 1656 320 0 25 0 chr6 140462672 140462712 -9054325 + (TTG)n Simple_repeat Simple_repeat 2 42 0 9 1656 682 241 47 0 chr6 140465784 140465954 -9051083 + B3 SINE B2 1 178 -38 9 1656 435 83 0 0 chr6 140470175 140470235 -9046802 + (TCC)n Simple_repeat Simple_repeat 3 62 0 9 1656 318 26 0 0 chr6 140470349 140470388 -9046649 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1656 466 271 50 0 chr6 140470954 140471094 -9045943 + RSINE1 SINE B4 2 148 -17 9 1656 183 42 0 0 chr6 140471444 140471468 -9045569 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 1656 234 291 0 37 chr6 140471754 140471836 -9045201 - ID4 SINE ID -3 80 2 9 1656 211 254 17 17 chr6 140471854 140471914 -9045123 + B3 SINE B2 3 62 -154 9 1656 308 242 163 19 chr6 140471942 140472094 -9044943 + B4 SINE B4 121 290 -2 9 1656 431 321 201 31 chr6 140472134 140472617 -9044420 - Tigger9b DNA MER2_type -56 568 4 9 1656 306 0 0 0 chr6 140473934 140473968 -9043069 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1656 468 0 0 0 chr6 140473968 140474019 -9043018 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 1656 180 0 0 0 chr6 140475515 140475535 -9041502 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1656 888 149 0 21 chr6 140475577 140475721 -9041316 + B1_Mur3 SINE Alu 4 144 -5 9 1656 240 111 0 0 chr6 140475721 140475757 -9041280 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 9 1656 189 0 0 0 chr6 140477166 140477187 -9039850 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 9 1656 687 229 30 0 chr6 140477354 140477485 -9039552 - B1_Mur2 SINE Alu -12 137 3 9 1656 269 218 141 0 chr6 140477892 140477970 -9039067 - PB1D10 SINE Alu 0 117 29 9 1656 1322 77 0 114 chr6 140478147 140478308 -9038729 + B2_Mm2 SINE B2 1 161 -34 9 1656 189 0 0 0 chr6 140478308 140478329 -9038708 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 9 1656 1322 77 0 114 chr6 140478329 140478387 -9038650 + B2_Mm2 SINE B2 162 195 0 9 1656 648 75 0 21 chr6 140478651 140478746 -9038291 + B2_Mm2 SINE B2 1 93 -102 9 1656 976 189 47 10 chr6 140478976 140479168 -9037869 - B3 SINE B2 -10 206 8 9 1656 235 312 40 8 chr6 140479195 140479321 -9037716 - L1_Mur2 LINE L1 -3509 2368 2239 9 1656 1112 113 0 12 chr6 140479483 140479653 -9037384 + 7SK RNA RNA 1 168 -163 9 1656 383 194 75 28 chr6 140479803 140479909 -9037128 - B3 SINE B2 -6 210 100 9 1656 245 89 0 22 chr6 140480237 140480283 -9036754 + (TTG)n Simple_repeat Simple_repeat 2 46 0 9 1656 294 215 72 29 chr6 140480312 140480451 -9036586 - RMER17B LTR ERVK -494 464 320 9 1656 376 283 161 5 chr6 140480516 140480715 -9036322 + L1M2 LINE L1 4733 4962 -1181 9 1656 796 48 0 0 chr6 140481374 140481477 -9035560 - B2_Mm2 SINE B2 -92 103 1 9 1656 1219 42 0 0 chr6 140481645 140481787 -9035250 - B1_Mus1 SINE Alu -5 143 2 9 1656 25 65 0 0 chr6 140482067 140482113 -9034924 + AT_rich Low_complexity Low_complexity 1 46 0 9 1656 252 133 111 48 chr6 140482369 140482432 -9034605 + PB1D9 SINE Alu 25 91 -29 9 1656 1598 37 16 0 chr6 140482660 140482849 -9034188 + B2_Mm1a SINE B2 2 193 0 9 1656 820 183 206 0 chr6 140483193 140483368 -9033669 + B3 SINE B2 1 211 -5 9 1656 323 231 131 28 chr6 140484776 140484883 -9032154 - B1F SINE Alu 0 149 32 9 1656 203 95 48 0 chr6 140485607 140485649 -9031388 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 9 1656 567 0 0 0 chr6 140485998 140486061 -9030976 + (TG)n Simple_repeat Simple_repeat 2 64 0 9 1656 388 258 190 8 chr6 140486064 140486185 -9030852 - RSINE1 SINE B4 -20 145 3 9 1656 276 274 82 21 chr6 140486187 140486284 -9030753 + PB1D10 SINE Alu 14 116 -1 9 1656 335 243 8 119 chr6 140486341 140486467 -9030570 - B1_Mur4 SINE Alu -8 142 31 9 1656 320 93 324 35 chr6 140486681 140486792 -9030245 - B2_Mm2 SINE B2 -6 189 47 9 1656 1265 108 11 0 chr6 140486874 140487050 -9029987 - B2_Mm1t SINE B2 -14 179 2 9 1656 797 125 23 0 chr6 140487140 140487268 -9029769 - B1_Mur4 SINE Alu -13 137 7 9 1656 278 364 106 23 chr6 140487382 140487514 -9029523 + RSINE1 SINE B4 21 163 -2 9 1656 522 248 17 0 chr6 140487559 140487676 -9029361 + B1_Mur3 SINE Alu 10 128 -21 9 1656 240 298 36 55 chr6 140487939 140487965 -9029072 + ID SINE ID 59 82 -142 9 1656 286 283 34 13 chr6 140487965 140488083 -9028954 + PB1D10 SINE Alu 1 123 -26 9 1656 774 193 133 0 chr6 140488117 140488298 -9028739 + B3 SINE B2 10 214 -2 9 1656 721 240 28 6 chr6 140489366 140489542 -9027495 - B3 SINE B2 -19 197 18 9 1656 522 43 0 0 chr6 140489543 140489612 -9027425 + (TC)n Simple_repeat Simple_repeat 1 69 0 9 1656 926 292 97 30 chr6 140489718 140490152 -9026885 - L1MA5 LINE L1 0 6300 5838 1 1656 483 82 0 0 chr6 140490157 140490230 -9026807 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1656 397 273 141 22 chr6 140490241 140490376 -9026661 - L1MA5 LINE L1 -533 5767 5617 1 1656 320 259 12 12 chr6 140490425 140490511 -9026526 - ID_B1 SINE B4 -2 222 137 1 1656 380 215 96 70 chr6 140491528 140491643 -9025394 + PB1D9 SINE Alu 3 120 0 1 1656 302 277 10 87 chr6 140491696 140491799 -9025238 + B1F SINE Alu 3 97 -52 1 1656 465 259 9 18 chr6 140493103 140493217 -9023820 + PB1D10 SINE Alu 1 113 -4 1 1656 293 253 103 21 chr6 140493444 140493541 -9023496 + PB1D7 SINE Alu 2 106 -14 1 1656 404 207 271 17 chr6 140493662 140493780 -9023257 - B1_Mur1 SINE Alu 0 149 2 1 1656 398 238 12 0 chr6 140493828 140493912 -9023125 - B3 SINE B2 -3 213 129 1 1656 215 192 0 71 chr6 140493923 140493979 -9023058 - B3 SINE B2 -146 52 1 1 1656 494 179 165 26 chr6 140493996 140494111 -9022926 + B1F1 SINE Alu 1 131 -18 1 1656 242 274 16 0 chr6 140494160 140494222 -9022815 + ID4 SINE ID 4 66 -17 1 1656 896 119 45 0 chr6 140494332 140494466 -9022571 - B1_Mur4 SINE Alu -10 140 1 1 1656 297 218 50 86 chr6 140494964 140495097 -9021940 - PB1D9 SINE Alu -3 146 22 1 1656 324 0 0 0 chr6 140495111 140495147 -9021890 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1656 242 256 72 10 chr6 140497042 140497163 -9019874 - B3 SINE B2 -68 130 1 1 1656 445 202 0 57 chr6 140497363 140497468 -9019569 - B1_Mur1 SINE Alu -35 114 16 1 1656 665 254 34 44 chr6 140497837 140498043 -9018994 + B3 SINE B2 9 212 -4 1 1656 873 189 94 25 chr6 140498103 140498304 -9018733 + B3 SINE B2 2 216 0 1 1656 549 0 0 0 chr6 140498472 140498533 -9018504 + (CGTG)n Simple_repeat Simple_repeat 1 61 0 1 1656 22 56 0 0 chr6 140498741 140498777 -9018260 + AT_rich Low_complexity Low_complexity 1 36 0 1 1656 366 208 39 68 chr6 140498839 140498942 -9018095 - PB1D9 SINE Alu 0 120 21 1 1656 230 277 15 15 chr6 140499143 140499209 -9017828 - ID SINE ID -150 74 9 1 1656 288 224 149 0 chr6 140500029 140500096 -9016941 - PB1 SINE Alu -7 120 44 1 1656 444 169 24 0 chr6 140500116 140500199 -9016838 - ORR1D1 LTR MaLR 0 374 290 2 1656 622 316 113 0 chr6 140500190 140500481 -9016556 + Charlie1a DNA MER1_type 500 823 -632 3 1656 444 281 13 146 chr6 140500817 140500975 -9016062 + RSINE1 SINE B4 4 140 -25 4 1656 243 0 0 0 chr6 140500975 140501002 -9016035 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1656 987 156 161 0 chr6 140501782 140501974 -9015063 + URR1A DNA MER1_type 1 223 -3 6 1656 303 259 42 59 chr6 140502068 140502187 -9014850 - PB1D10 SINE Alu 0 117 1 7 1656 277 297 55 0 chr6 140502260 140502351 -9014686 + B1F SINE Alu 1 96 -53 8 1656 285 188 91 30 chr6 140502549 140502615 -9014422 - PB1D10 SINE Alu -65 84 15 9 1656 350 126 58 24 chr6 140504959 140505037 -9012000 + PB1D7 SINE Alu 17 92 -55 1 1656 352 248 99 0 chr6 140506541 140506642 -9010395 + PB1D10 SINE Alu 3 113 -4 1 1656 295 283 198 51 chr6 140507259 140507512 -9009525 + B4A SINE B4 1 290 -2 1 1656 382 219 8 118 chr6 140508233 140508352 -9008685 + PB1D7 SINE Alu 15 120 0 1 1656 249 239 0 15 chr6 140508700 140508768 -9008269 - B1_Mus1 SINE Alu -77 71 5 1 1656 234 0 0 0 chr6 140508926 140508952 -9008085 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1656 186 180 32 16 chr6 140508985 140509047 -9007990 + CT-rich Low_complexity Low_complexity 2 64 0 1 25 238 215 0 30 chr6 140509144 140509211 -9007826 + C-rich Low_complexity Low_complexity 5 69 0 1 1657 2070 210 118 4 chr6 140509372 140509879 -9007158 - RMER15 LTR ERVL -10 565 1 1 1657 359 157 14 0 chr6 140509927 140509997 -9007040 + CT-rich Low_complexity Low_complexity 1 71 0 1 1657 183 167 0 0 chr6 140512527 140512557 -9004480 - L3 LINE CR1 -3572 917 888 2 1657 414 224 52 77 chr6 140513300 140513455 -9003582 - RSINE1 SINE B4 -4 161 11 2 1657 327 127 0 0 chr6 140513653 140513716 -9003321 + (T)n Simple_repeat Simple_repeat 1 63 0 2 1657 1189 69 0 0 chr6 140513732 140513877 -9003160 - B1_Mus2 SINE Alu -2 145 1 2 1657 391 239 45 9 chr6 140513984 140514094 -9002943 - B1_Mus2 SINE Alu -33 114 1 2 1657 590 269 65 6 chr6 140514100 140514268 -9002769 - ID_B1 SINE B4 -26 198 21 2 1657 1085 83 105 23 chr6 140514325 140514497 -9002540 + B2_Mm2 SINE B2 1 186 -9 2 1657 261 309 41 10 chr6 140514507 140514605 -9002432 + PB1D7 SINE Alu 1 101 -19 2 1657 482 139 13 0 chr6 140514645 140514724 -9002313 + B3A SINE B2 1 80 -118 2 1657 317 224 90 20 chr6 140514724 140514745 -9002292 + RSINE1 SINE B4 2 108 -57 2 1657 183 100 0 0 chr6 140514951 140514981 -9002056 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1657 401 200 233 0 chr6 140514981 140515101 -9001936 - B1_Mur1 SINE Alu 0 149 2 3 1657 348 219 98 0 chr6 140515322 140515404 -9001633 + RSINE1 SINE B4 5 94 -71 3 1657 508 230 0 29 chr6 140515526 140515629 -9001408 + ID_B1 SINE B4 105 204 -20 3 1657 651 238 53 47 chr6 140515636 140515826 -9001211 + B3A SINE B2 1 191 -7 3 1657 252 191 176 0 chr6 140515928 140515996 -9001041 + PB1D10 SINE Alu 30 109 -8 3 1657 570 250 26 0 chr6 140517940 140518056 -8998981 - B1_Mur3 SINE Alu -30 119 1 3 1657 283 255 133 29 chr6 140518085 140518190 -8998847 + PB1 SINE Alu 1 116 -11 3 1657 210 71 0 0 chr6 140518195 140518223 -8998814 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 3 1657 28 0 0 0 chr6 140518343 140518371 -8998666 + AT_rich Low_complexity Low_complexity 1 28 0 3 1657 295 304 59 0 chr6 140518371 140518473 -8998564 - MT2B LTR ERVL -339 262 155 4 1657 339 266 35 26 chr6 140519019 140519155 -8997882 + B1F1 SINE Alu 13 149 0 4 1657 506 248 47 9 chr6 140519340 140519446 -8997591 - RSINE1 SINE B4 -29 136 27 4 1657 265 208 0 0 chr6 140519446 140519499 -8997538 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 1657 393 306 0 10 chr6 140519568 140519667 -8997370 + B1F SINE Alu 1 98 -51 4 1657 414 57 0 0 chr6 140519680 140519733 -8997304 + (TATG)n Simple_repeat Simple_repeat 3 55 0 4 1657 1201 131 7 5 chr6 140519733 140519932 -8997105 - B2_Mm2 SINE B2 -13 203 2 4 1657 410 312 87 17 chr6 140520038 140520211 -8996826 - B3A SINE B2 -2 193 9 4 1657 285 176 29 0 chr6 140520226 140520294 -8996743 - PB1D9 SINE Alu -9 111 42 4 1657 231 128 33 44 chr6 140520296 140520386 -8996651 + CT-rich Low_complexity Low_complexity 4 92 0 4 1657 301 194 15 75 chr6 140520417 140520484 -8996553 + B3 SINE B2 27 89 -127 5 1657 297 288 15 74 chr6 140520743 140520965 -8996072 + L1MA4A LINE L1 5647 5942 -358 5 1657 258 257 129 0 chr6 140521010 140521080 -8995957 + ID2 SINE ID 4 82 -1 5 1657 1295 118 16 0 chr6 140521080 140521266 -8995771 - B2_Mm2 SINE B2 -5 190 2 5 1657 27 0 0 0 chr6 140521910 140521937 -8995100 + AT_rich Low_complexity Low_complexity 1 27 0 5 1657 410 269 161 0 chr6 140521951 140522081 -8994956 + B3 SINE B2 20 170 -46 5 1657 962 162 271 22 chr6 140522082 140522383 -8994654 - ORR1C1 LTR MaLR 0 374 2 5 1657 246 221 197 34 chr6 140522633 140522750 -8994287 + B1F1 SINE Alu 1 136 -13 5 1657 1412 138 44 95 chr6 140522751 140523047 -8993990 - ORR1B1 LTR MaLR -6 388 108 5 1657 685 195 158 39 chr6 140523046 140523100 -8993937 + ORR1C2 LTR MaLR 110 162 -222 5 1657 1302 88 43 5 chr6 140523100 140523284 -8993753 + B2_Mm2 SINE B2 1 191 -4 6 1657 685 195 158 39 chr6 140523284 140523432 -8993605 + ORR1C2 LTR MaLR 163 336 -48 5 1657 509 172 8 88 chr6 140523451 140523574 -8993463 + PB1D9 SINE Alu 3 120 0 6 1657 248 109 0 115 chr6 140523578 140523630 -8993407 + ORR1C2 LTR MaLR 324 369 -9 5 1657 338 265 184 0 chr6 140523628 140523775 -8993262 - B3 SINE B2 -42 174 1 6 1657 1220 61 0 0 chr6 140523894 140524041 -8992996 + B1_Mus1 SINE Alu 2 148 0 6 1657 225 94 0 0 chr6 140524043 140524075 -8992962 + (GAA)n Simple_repeat Simple_repeat 2 33 0 6 1657 3980 42 4 16 chr6 140524190 140524677 -8992360 - L1Md_F2 LINE L1 -1 6581 6101 6 1657 180 0 0 0 chr6 140525141 140525161 -8991876 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 1657 1180 62 7 0 chr6 140525182 140525327 -8991710 - B1_Mm SINE Alu 0 147 2 6 1657 559 243 224 0 chr6 140525454 140525664 -8991373 - ORR1E LTR MaLR -1 358 102 6 1657 1139 97 50 28 chr6 140526136 140526316 -8990721 - B2_Mm2 SINE B2 -10 185 2 6 1657 424 197 181 45 chr6 140526764 140526897 -8990140 - B3 SINE B2 -3 213 63 7 1657 741 182 8 0 chr6 140526960 140527086 -8989951 + B1_Mus2 SINE Alu 9 135 -12 7 1657 21 0 0 0 chr6 140527087 140527108 -8989929 + GC_rich Low_complexity Low_complexity 1 21 0 7 1657 341 275 12 0 chr6 140527142 140527222 -8989815 + PB1D7 SINE Alu 10 90 -30 7 1657 581 269 12 30 chr6 140527312 140527477 -8989560 + RSINE1 SINE B4 4 165 0 7 1657 1425 60 28 0 chr6 140527502 140527684 -8989353 - B2_Mm2 SINE B2 -7 188 2 7 1657 620 110 8 76 chr6 140527762 140527880 -8989157 + PB1D9 SINE Alu 9 118 -2 7 1657 414 181 114 0 chr6 140528073 140528178 -8988859 + PB1D10 SINE Alu 1 117 0 7 1657 21 0 0 0 chr6 140529100 140529121 -8987916 + AT_rich Low_complexity Low_complexity 1 21 0 7 1657 321 234 39 0 chr6 140529509 140529586 -8987451 + PB1D10 SINE Alu 36 115 -2 7 1657 295 334 17 11 chr6 140529740 140529848 -8987189 + PB1D10 SINE Alu 2 113 -34 8 1657 240 139 23 0 chr6 140529868 140529911 -8987126 + ID_B1 SINE B4 174 217 -7 8 1657 592 280 25 19 chr6 140529960 140530120 -8986917 + B3 SINE B2 50 210 -6 8 1657 27 49 0 0 chr6 140530189 140530230 -8986807 + AT_rich Low_complexity Low_complexity 1 41 0 8 1657 1268 47 0 0 chr6 140530756 140530904 -8986133 + B1_Mus1 SINE Alu 1 148 0 8 1657 598 212 17 8 chr6 140530928 140531047 -8985990 + PB1D9 SINE Alu 1 120 0 8 1657 224 219 0 0 chr6 140531047 140531088 -8985949 + GA-rich Low_complexity Low_complexity 4 44 0 8 1657 272 250 0 59 chr6 140531117 140531185 -8985852 + PB1D10 SINE Alu 53 116 -1 8 1657 542 253 155 27 chr6 140531185 140531372 -8985665 + B3 SINE B2 1 211 -5 8 1657 526 173 19 0 chr6 140531391 140531495 -8985542 - B1_Mus2 SINE Alu 0 147 42 8 1657 334 136 16 48 chr6 140531530 140531592 -8985445 - B1_Mus1 SINE Alu -88 60 1 9 1657 347 275 0 0 chr6 140531650 140531730 -8985307 + B3A SINE B2 2 81 -117 9 1657 351 113 0 0 chr6 140531923 140531976 -8985061 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 9 1657 1249 41 0 0 chr6 140531977 140532124 -8984913 - B1_Mus2 SINE Alu 0 147 1 9 1657 316 250 82 10 chr6 140532667 140532764 -8984273 + PB1D10 SINE Alu 6 109 -8 9 1657 1236 54 0 0 chr6 140532810 140532957 -8984080 + B1_Mus2 SINE Alu 1 147 0 9 1657 1596 47 5 0 chr6 140533359 140533550 -8983487 + B2_Mm1t SINE B2 1 192 -1 9 1657 585 0 0 0 chr6 140533857 140533922 -8983115 + (TG)n Simple_repeat Simple_repeat 1 65 0 9 1657 523 277 34 57 chr6 140533959 140534135 -8982902 - B4A SINE B4 -120 172 1 9 1657 722 168 48 20 chr6 140534188 140534334 -8982703 - B1_Mur4 SINE Alu 0 150 1 9 1657 314 250 45 11 chr6 140534628 140534717 -8982320 - ID_B1 SINE B4 0 224 133 1 1657 526 254 48 21 chr6 140535364 140535509 -8981528 - RSINE1 SINE B4 -6 159 11 1 1657 317 198 172 3 chr6 140535515 140535621 -8981416 - B1F SINE Alu -20 127 1 1 1657 269 283 29 39 chr6 140535628 140535731 -8981306 - ID_B1 SINE B4 0 224 123 1 1657 843 156 7 7 chr6 140535807 140535943 -8981094 - B1_Mm SINE Alu -7 140 5 1 1657 255 216 53 13 chr6 140535963 140536038 -8980999 - B1F SINE Alu -4 145 68 1 1657 233 240 52 26 chr6 140536381 140536458 -8980579 - MTB_Mm LTR MaLR -6 353 275 1 1657 242 266 138 0 chr6 140536471 140536565 -8980472 - MTB_Mm LTR MaLR -245 162 56 1 1657 525 191 221 6 chr6 140537199 140537362 -8979675 + B3 SINE B2 4 201 -15 1 1657 245 319 77 0 chr6 140537435 140537526 -8979511 + PB1D10 SINE Alu 2 99 -18 1 1657 390 312 71 8 chr6 140537521 140537647 -8979390 + B1F SINE Alu 14 147 -2 1 1657 3201 41 3 8 chr6 140538332 140538723 -8978314 - L1Md_F2 LINE L1 -2 6580 6192 1 1657 687 176 219 11 chr6 140538725 140538903 -8978134 - B3 SINE B2 0 216 2 1 1657 590 204 9 0 chr6 140538952 140539060 -8977977 + B1_Mus2 SINE Alu 38 146 -1 1 1657 1257 21 7 0 chr6 140539063 140539208 -8977829 + B1_Mm SINE Alu 2 147 0 1 1657 936 229 55 5 chr6 140539403 140539605 -8977432 + B3 SINE B2 1 212 -4 1 1657 227 277 164 30 chr6 140539778 140539794 -8977243 - ID_B1 SINE B4 0 224 209 1 1657 525 32 0 0 chr6 140539794 140539857 -8977180 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1657 251 234 58 96 chr6 140539860 140539964 -8977073 - PB1D10 SINE Alu -17 100 1 1 1657 1419 38 60 5 chr6 140540511 140540695 -8976342 - B2_Mm2 SINE B2 0 195 2 1 1657 234 258 168 21 chr6 140540736 140540831 -8976206 + PB1D10 SINE Alu 1 109 -8 1 1657 217 234 21 0 chr6 140540838 140540885 -8976152 + B3A SINE B2 2 49 -149 1 1657 216 159 21 64 chr6 140540965 140541012 -8976025 - B1_Mur4 SINE Alu -11 139 95 1 1657 765 177 0 23 chr6 140541046 140541179 -8975858 - B1_Mur3 SINE Alu -19 130 1 1 1657 518 138 217 33 chr6 140541783 140541903 -8975134 - B1_Mm SINE Alu -4 143 2 1 1657 198 0 0 0 chr6 140541958 140541980 -8975057 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1657 425 322 48 61 chr6 140542683 140542848 -8974189 - RSINE1 SINE B4 0 165 3 1 1657 276 247 65 121 chr6 140543620 140543686 -8973351 + ID_B1 SINE B4 36 207 -85 1 1657 592 157 38 90 chr6 140543686 140543819 -8973218 + B1_Mur2 SINE Alu 24 149 0 1 1657 725 255 156 0 chr6 140543826 140544018 -8973019 + ID_B1 SINE B4 1 222 -2 1 1657 255 282 64 142 chr6 140544018 140544032 -8973005 + B4 SINE B4 231 243 -49 1 1657 1178 34 0 52 chr6 140544042 140544197 -8972840 + B1_Mm SINE Alu 1 147 0 1 1657 29 0 0 0 chr6 140545221 140545250 -8971787 + AT_rich Low_complexity Low_complexity 1 29 0 1 1657 513 0 0 0 chr6 140545658 140545715 -8971322 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 1 1657 512 198 153 0 chr6 140545730 140545841 -8971196 - B1_Mur1 SINE Alu -16 133 6 1 1657 258 279 51 0 chr6 140545865 140545944 -8971093 + ID4 SINE ID 1 83 0 1 1657 327 243 44 61 chr6 140546810 140546924 -8970113 - B3A SINE B2 0 198 87 1 1657 406 232 24 0 chr6 140547385 140547467 -8969570 - B3A SINE B2 -114 84 1 1 1657 443 206 19 19 chr6 140547751 140547855 -8969182 - ORR1B2 LTR MaLR -263 104 1 1 1657 4729 177 130 13 chr6 140547867 140548930 -8968107 - RLTR42-int LTR ERVK -583 4939 3753 1 1657 361 246 141 34 chr6 140548937 140549114 -8967923 - RLTR42-int LTR ERVK -3790 1732 1537 1 1657 1220 121 10 59 chr6 140549153 140549177 -8967860 - B2_Mm2 SINE B2 -3 192 170 1 1657 1143 62 0 27 chr6 140549177 140549327 -8967710 + B1_Mus2 SINE Alu 2 147 0 1 1657 1220 121 10 59 chr6 140549327 140549504 -8967533 - B2_Mm2 SINE B2 -26 169 1 1 1657 2382 192 72 130 chr6 140549530 140549816 -8967221 - RLTR42-int LTR ERVK -3967 1555 1294 1 1657 1545 180 77 199 chr6 140549816 140550399 -8966638 + RLTR18B LTR ERVK 1 512 0 1 1657 2382 192 72 130 chr6 140550399 140550620 -8966417 - RLTR42-int LTR ERVK -4229 1293 1073 1 1657 402 39 0 0 chr6 140550620 140550672 -8966365 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1657 216 0 0 0 chr6 140550672 140550695 -8966342 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1657 2382 192 72 130 chr6 140550695 140551009 -8966028 - RLTR42-int LTR ERVK -4450 1072 782 1 1657 803 64 159 8 chr6 140551021 140551147 -8965890 - B1_Mus1 SINE Alu 0 148 4 1 1657 719 158 50 43 chr6 140551177 140551295 -8965742 + B1_Mur4 SINE Alu 1 117 -33 1 1657 432 0 0 0 chr6 140551295 140551343 -8965694 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1657 719 158 50 43 chr6 140551343 140551363 -8965674 + B1_Mur4 SINE Alu 118 139 -11 1 1657 220 175 0 66 chr6 140551368 140551429 -8965608 + GA-rich Low_complexity Low_complexity 3 59 0 1 1657 730 182 44 0 chr6 140551429 140551566 -8965471 - RLTR42-int LTR ERVK -4946 576 434 1 1657 468 167 169 31 chr6 140551602 140551644 -8965393 + RLTR42-int LTR ERVK 1031 1089 -4433 1 1657 465 19 0 0 chr6 140551644 140551698 -8965339 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1657 468 167 169 31 chr6 140551698 140551785 -8965252 + RLTR42-int LTR ERVK 1090 1178 -4344 1 1657 385 304 0 0 chr6 140551789 140551881 -8965156 - RSINE1 SINE B4 -69 96 5 1 1657 432 55 0 0 chr6 140552471 140552526 -8964511 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1657 1681 165 47 49 chr6 140552663 140553071 -8963966 - RMER17C LTR ERVK -1 409 3 1 1657 482 315 22 27 chr6 140553139 140553322 -8963715 - B3A SINE B2 -16 182 1 1 1657 427 318 0 0 chr6 140553349 140553459 -8963578 + PB1D7 SINE Alu 11 120 0 1 1657 1301 40 21 65 chr6 140553776 140553962 -8963075 + B2_Mm2 SINE B2 2 179 -16 1 1657 419 99 345 10 chr6 140553973 140554083 -8962954 + B2_Mm2 SINE B2 47 192 -3 1 1657 269 242 30 0 chr6 140554175 140554241 -8962796 + B1_Mur1 SINE Alu 82 149 0 1 1657 225 294 136 10 chr6 140554310 140554413 -8962624 - PB1D10 SINE Alu -1 116 1 1 1657 227 297 21 62 chr6 140554413 140554448 -8962589 - B4A SINE B4 -208 84 54 1 1657 234 317 47 28 chr6 140554438 140554545 -8962492 + ID_B1 SINE B4 79 187 -37 1 1657 617 192 92 13 chr6 140555396 140555549 -8961488 + RSINE1 SINE B4 1 165 0 1 1657 653 262 12 30 chr6 140555583 140555748 -8961289 + B3A SINE B2 2 163 -35 1 1657 910 112 21 7 chr6 140555764 140555908 -8961129 + B1_Mus2 SINE Alu 2 147 0 1 1657 1263 129 58 236 chr6 140555944 140556443 -8960594 + RMER17C LTR ERVK 1 410 0 1 1657 404 301 57 0 chr6 140556671 140556794 -8960243 - ID_B1 SINE B4 -93 131 2 1 1657 754 168 41 14 chr6 140556833 140556978 -8960059 - B1_Mur3 SINE Alu 0 149 1 1 1657 713 269 24 14 chr6 140557255 140557466 -8959571 - ID_B1 SINE B4 -2 222 10 1 1657 277 24 48 0 chr6 140557747 140557789 -8959248 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1657 348 60 20 0 chr6 140557789 140557839 -8959198 - B1_Mus2 SINE Alu -8 139 89 1 1657 315 0 0 0 chr6 140557843 140557878 -8959159 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1657 633 309 43 19 chr6 140558791 140559002 -8958035 - B3 SINE B2 0 216 1 1 1657 449 260 129 28 chr6 140559010 140559188 -8957849 - B3A SINE B2 -1 197 2 1 1657 840 121 0 0 chr6 140559202 140559334 -8957703 + (TTCC)n Simple_repeat Simple_repeat 4 135 0 1 1657 369 61 0 70 chr6 140559335 140559351 -8957686 - B2_Mm1a SINE B2 -1 192 180 1 1657 1192 48 7 0 chr6 140559351 140559498 -8957539 - B1_Mus1 SINE Alu 0 148 1 1 1657 549 0 0 0 chr6 140559498 140559559 -8957478 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1657 369 61 0 70 chr6 140559559 140559612 -8957425 - B2_Mm1a SINE B2 -14 179 128 1 1657 1281 80 29 0 chr6 140559667 140559842 -8957195 - B2_Mm2 SINE B2 -14 181 2 1 1657 615 194 16 16 chr6 140561023 140561149 -8955888 - B1F2 SINE Alu -21 128 3 1 1657 329 271 55 71 chr6 140561036 140561163 -8955874 - B4 SINE B4 -88 204 80 1 1657 708 266 10 50 chr6 140561229 140561427 -8955610 - B3A SINE B2 -8 190 1 1 1657 401 241 0 0 chr6 140561574 140561657 -8955380 + ID_B1 SINE B4 133 215 -9 1 1657 310 250 35 23 chr6 140561581 140561667 -8955370 + B1F SINE Alu 62 148 -1 1 1657 824 90 0 8 chr6 140561687 140561810 -8955227 + B1_Mur4 SINE Alu 18 139 -11 1 1657 1199 126 10 25 chr6 140561831 140562027 -8955010 + B2_Mm2 SINE B2 2 194 -1 1 1657 221 297 132 0 chr6 140562273 140562364 -8954673 + B1F1 SINE Alu 1 103 -46 1 1657 337 210 207 36 chr6 140562416 140562609 -8954428 - RMER15 LTR ERVL -72 503 278 1 1657 801 128 15 29 chr6 140562768 140562905 -8954132 - B1_Mur4 SINE Alu -1 149 15 1 1657 1147 68 0 27 chr6 140562906 140563056 -8953981 + B1_Mus2 SINE Alu 2 147 0 1 1657 180 111 0 0 chr6 140563619 140563646 -8953391 + (CACG)n Simple_repeat Simple_repeat 1 27 0 1 1657 378 291 74 53 chr6 140563809 140563964 -8953073 + B3A SINE B2 3 160 -38 1 1657 192 40 0 0 chr6 140563964 140563989 -8953048 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1657 279 291 74 53 chr6 140563989 140564022 -8953015 + B2_Mm2 SINE B2 159 194 -1 1 1657 341 257 30 0 chr6 140564279 140564380 -8952657 + PB1D10 SINE Alu 2 105 -12 1 1657 213 0 81 0 chr6 140564397 140564434 -8952603 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1657 930 31 0 37 chr6 140564434 140564569 -8952468 - B1_Mus1 SINE Alu -13 135 6 1 1657 415 240 71 8 chr6 140564459 140564585 -8952452 - B4 SINE B4 -88 204 71 1 1657 358 277 18 0 chr6 140564650 140564762 -8952275 - B3A SINE B2 -84 114 1 1 1657 198 91 0 0 chr6 140564776 140564809 -8952228 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1657 1216 61 0 0 chr6 140564809 140564956 -8952081 - B1_Mus2 SINE Alu 0 147 1 1 1657 350 256 0 0 chr6 140565186 140565268 -8951769 - RSINE1 SINE B4 -6 159 78 1 1657 316 266 0 12 chr6 140565338 140565418 -8951619 + B1F SINE Alu 54 132 -17 1 1657 390 278 80 38 chr6 140565467 140565680 -8951357 + ID_B1 SINE B4 1 222 -2 1 1657 1051 124 6 6 chr6 140565680 140565858 -8951179 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 2 1657 851 44 26 0 chr6 140565858 140565972 -8951065 + (GAAAA)n Simple_repeat Simple_repeat 1 117 0 2 1657 1201 233 24 3 chr6 140566030 140566327 -8950710 + LTR82B Low_complexity ERVL 12 314 -516 2 1657 418 264 0 18 chr6 140566558 140566670 -8950367 + RSINE1 SINE B4 22 131 -34 2 1657 1201 60 15 15 chr6 140566682 140567426 -8949611 + (CA)n Simple_repeat Simple_repeat 1 744 0 2 1657 1398 30 47 6 chr6 140567466 140567635 -8949402 + B2_Mm2 SINE B2 2 177 -18 2 1657 459 0 0 0 chr6 140567638 140567689 -8949348 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1657 392 98 0 16 chr6 140567702 140567764 -8949273 - B2_Mm2 SINE B2 -134 61 1 2 1657 360 0 0 0 chr6 140568100 140568140 -8948897 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1657 433 268 0 38 chr6 140568162 140568294 -8948743 + ID_B1 SINE B4 86 212 -12 2 1657 609 228 13 58 chr6 140568760 140568914 -8948123 + B1_Mur1 SINE Alu 3 149 0 2 1657 418 296 152 26 chr6 140569356 140569699 -8947338 + LTR88b LTR Gypsy? 1 386 -451 2 1657 369 109 0 0 chr6 140570536 140570591 -8946446 + (T)n Simple_repeat Simple_repeat 1 55 0 2 1657 367 280 76 0 chr6 140571137 140571153 -8945884 - B4 SINE B4 -49 243 103 2 1657 545 165 104 0 chr6 140571153 140571268 -8945769 - B1F2 SINE Alu -5 144 18 2 1657 370 262 82 7 chr6 140571281 140571427 -8945610 - B3 SINE B2 -39 177 21 2 1657 450 0 0 0 chr6 140571801 140571851 -8945186 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1657 24 32 0 0 chr6 140571981 140572012 -8945025 + GC_rich Low_complexity Low_complexity 1 31 0 2 1657 32 26 0 0 chr6 140572276 140572315 -8944722 + GC_rich Low_complexity Low_complexity 1 39 0 2 1657 222 105 0 0 chr6 140572322 140572360 -8944677 + (GGA)n Simple_repeat Simple_repeat 1 38 0 2 1657 274 313 13 26 chr6 140572388 140572539 -8944498 + G-rich Low_complexity Low_complexity 1 149 0 2 1657 269 308 8 32 chr6 140572467 140572591 -8944446 + (CGG)n Simple_repeat Simple_repeat 2 122 0 2 1657 311 309 17 23 chr6 140572614 140572786 -8944251 + (CGG)n Simple_repeat Simple_repeat 3 173 0 2 1657 23 0 0 0 chr6 140573070 140573093 -8943944 + GC_rich Low_complexity Low_complexity 1 23 0 2 1657 21 0 0 0 chr6 140573345 140573366 -8943671 + GC_rich Low_complexity Low_complexity 1 21 0 2 1657 292 280 40 0 chr6 140574570 140574645 -8942392 - PB1D7 SINE Alu -7 113 36 2 1657 233 316 157 8 chr6 140575799 140575933 -8941104 - RSINE1 SINE B4 -9 156 3 2 1657 726 12 0 0 chr6 140576100 140576183 -8940854 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 2 1657 285 202 131 28 chr6 140576194 140576301 -8940736 - B1_Mus2 SINE Alu -23 124 7 2 1657 495 179 192 25 chr6 140576546 140576666 -8940371 + B1_Mur3 SINE Alu 9 148 -1 2 1657 384 226 37 45 chr6 140576888 140577022 -8940015 - B3A SINE B2 -63 135 3 2 1657 202 61 61 0 chr6 140577210 140577243 -8939794 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1657 259 306 52 43 chr6 140577346 140577462 -8939575 - PB1D10 SINE Alu 0 117 1 2 1657 263 117 0 48 chr6 140577513 140577576 -8939461 + T-rich Low_complexity Low_complexity 1 60 0 2 1657 1194 54 0 0 chr6 140577576 140577723 -8939314 - B1_Mus2 SINE Alu 0 147 1 2 1657 541 234 62 56 chr6 140577779 140577974 -8939063 - B3A SINE B2 -2 196 1 2 1657 216 0 0 0 chr6 140577985 140578009 -8939028 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1657 424 202 19 66 chr6 140578518 140578624 -8938413 - PB1D9 SINE Alu -6 114 14 2 1657 217 200 20 0 chr6 140578741 140578791 -8938246 + PB1D10 SINE Alu 60 110 -7 2 1657 237 186 31 78 chr6 140578947 140579011 -8938026 - B1F SINE Alu -7 142 82 2 1657 924 65 113 0 chr6 140580461 140580585 -8936452 + B1_Mus2 SINE Alu 1 138 -9 2 1657 1529 44 16 0 chr6 140580980 140581162 -8935875 + B2_Mm1t SINE B2 2 186 -7 2 1657 246 24 0 0 chr6 140581163 140581205 -8935832 + L1_Mus4 LINE L1 6595 6636 0 2 1657 1116 59 147 0 chr6 140581224 140581394 -8935643 + B2_Mm2 SINE B2 1 195 0 2 1657 500 253 173 0 chr6 140581529 140581679 -8935358 + B3 SINE B2 27 202 -14 2 1657 546 171 0 0 chr6 140581694 140581843 -8935194 + (TG)n Simple_repeat Simple_repeat 2 150 0 2 1657 459 0 0 0 chr6 140581843 140581894 -8935143 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1657 546 171 0 0 chr6 140581894 140581908 -8935129 + (TG)n Simple_repeat Simple_repeat 2 15 0 2 1657 298 307 29 10 chr6 140582889 140582991 -8934046 + B3 SINE B2 97 200 -16 2 1657 226 308 0 0 chr6 140583077 140583142 -8933895 + T-rich Low_complexity Low_complexity 4 68 0 2 1657 709 246 0 0 chr6 140583183 140583325 -8933712 + B1_Mus1 SINE Alu 2 143 -5 2 1657 513 0 0 0 chr6 140583467 140583524 -8933513 + (TTA)n Simple_repeat Simple_repeat 3 59 0 2 1657 3344 71 24 7 chr6 140583524 140583976 -8933061 - L1_Mus2 LINE L1 -13 6553 6094 2 1657 314 98 20 0 chr6 140584086 140584137 -8932900 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 2 1657 357 232 50 10 chr6 140584150 140584250 -8932787 - PB1D9 SINE Alu 0 120 17 2 1657 366 241 35 69 chr6 140584421 140584537 -8932500 - PB1D9 SINE Alu -5 115 4 2 1657 864 107 232 13 chr6 140584561 140584712 -8932325 - B2_Mm2 SINE B2 -10 185 2 2 1657 586 263 15 0 chr6 140584792 140584925 -8932112 - RSINE1 SINE B4 -28 137 3 2 1657 263 232 48 24 chr6 140584994 140585078 -8931959 - PB1D10 SINE Alu -22 95 10 2 1657 1208 22 0 0 chr6 140585113 140585250 -8931787 - B1_Mus2 SINE Alu -10 137 1 2 1657 261 275 100 0 chr6 140585432 140585512 -8931525 - PB1D10 SINE Alu 0 117 30 2 1657 477 264 21 35 chr6 140586336 140586481 -8930556 - B1F SINE Alu -6 143 1 2 1657 1243 54 0 0 chr6 140587070 140587218 -8929819 + B1_Mus1 SINE Alu 1 148 0 2 1657 643 213 31 8 chr6 140587443 140587571 -8929466 - B1_Mur1 SINE Alu -18 131 1 2 1657 263 129 0 41 chr6 140587833 140587874 -8929163 + T-rich Low_complexity Low_complexity 32 70 0 2 1657 1661 31 0 5 chr6 140587874 140588066 -8928971 - B2_Mm1t SINE B2 -1 192 2 2 1657 263 129 0 41 chr6 140588066 140588097 -8928940 + T-rich Low_complexity Low_complexity 1 31 0 2 1657 606 117 42 58 chr6 140588099 140588278 -8928759 - B1_Mus1 SINE Alu -1 149 3 2 1657 356 198 43 32 chr6 140588194 140588288 -8928749 - B4 SINE B4 -118 174 80 2 1657 228 234 93 0 chr6 140588196 140588303 -8928734 - ORR1B1-int LTR MaLR -776 733 617 2 1657 409 280 42 17 chr6 140588935 140589055 -8927982 - B4A SINE B4 -169 123 1 2 1657 1364 80 21 11 chr6 140590050 140590240 -8926797 - B2_Mm1t SINE B2 0 193 2 2 1657 303 212 73 36 chr6 140590257 140590379 -8926658 + B1F2 SINE Alu 10 135 -14 2 1657 22 0 0 0 chr6 140591113 140591135 -8925902 + AT_rich Low_complexity Low_complexity 1 22 0 2 1657 1066 98 0 0 chr6 140591831 140591984 -8925053 - B2_Mm2 SINE B2 -42 153 1 2 1657 324 0 0 0 chr6 140592059 140592095 -8924942 + (TGG)n Simple_repeat Simple_repeat 1 36 0 2 1657 1155 68 0 27 chr6 140592095 140592234 -8924803 - B1_Mus2 SINE Alu -10 137 2 2 1657 241 291 0 58 chr6 140592908 140593002 -8924035 + ID4_ SINE ID 6 94 -58 2 1657 1617 16 5 11 chr6 140593061 140593251 -8923786 - B2_Mm1t SINE B2 -3 190 2 2 1657 1417 50 78 0 chr6 140593448 140593466 -8923571 - B2_Mm1t SINE B2 0 193 176 2 1657 207 0 0 0 chr6 140593466 140593489 -8923548 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2 1657 1417 50 78 0 chr6 140593489 140593649 -8923388 - B2_Mm1t SINE B2 -18 175 2 2 1657 312 250 32 54 chr6 140593704 140593797 -8923240 - B3A SINE B2 -105 93 3 2 1657 1306 14 0 0 chr6 140593905 140594052 -8922985 - B1_Mus2 SINE Alu 0 147 1 2 1657 185 0 40 0 chr6 140594282 140594307 -8922730 + (TGGGGG)n Simple_repeat Simple_repeat 6 31 0 2 1657 218 286 0 0 chr6 140594462 140594511 -8922526 - PB1D10 SINE Alu -60 57 9 2 1657 958 88 7 20 chr6 140594877 140595028 -8922009 - B2_Mm1t SINE B2 -2 191 43 2 1657 222 62 0 0 chr6 140595110 140595142 -8921895 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1657 329 200 82 0 chr6 140595967 140596052 -8920985 + B3 SINE B2 122 213 -3 2 1657 1206 62 0 0 chr6 140597080 140597226 -8919811 - B1_Mus1 SINE Alu -1 147 2 2 1657 1112 72 0 0 chr6 140598186 140598324 -8918713 - B1_Mus2 SINE Alu -9 138 1 2 1657 31 26 0 0 chr6 140598770 140598808 -8918229 + AT_rich Low_complexity Low_complexity 1 38 0 2 1657 22 0 0 0 chr6 140598962 140598984 -8918053 + AT_rich Low_complexity Low_complexity 1 22 0 2 1657 426 235 59 25 chr6 140599045 140599163 -8917874 - PB1 SINE Alu -3 124 3 2 1657 40 37 0 0 chr6 140600142 140600196 -8916841 + AT_rich Low_complexity Low_complexity 1 54 0 2 1657 224 221 114 29 chr6 140602352 140602422 -8914615 + B1_Mus2 SINE Alu 1 76 -71 2 1657 265 319 35 0 chr6 140602514 140602627 -8914410 + RSINE1 SINE B4 2 118 -47 2 1657 314 268 138 0 chr6 140604555 140604678 -8912359 + B3A SINE B2 2 141 -57 2 1657 220 235 101 14 chr6 140605523 140605592 -8911445 - PB1D10 SINE Alu -42 75 1 2 1657 681 13 0 0 chr6 140605885 140605963 -8911074 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 1657 596 146 64 0 chr6 140605963 140606073 -8910964 - B2_Mm2 SINE B2 -78 117 1 2 1657 233 29 29 0 chr6 140606221 140606255 -8910782 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1657 440 225 122 15 chr6 140606420 140606551 -8910486 + B4A SINE B4 148 292 0 3 1657 441 246 53 0 chr6 140606994 140607108 -8909929 - PB1D9 SINE Alu 0 120 1 3 1657 222 240 0 39 chr6 140607467 140607519 -8909518 + polypyrimidine Low_complexity Low_complexity 4 53 0 3 1657 351 0 0 0 chr6 140607689 140607728 -8909309 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1657 966 18 0 0 chr6 140608311 140608423 -8908614 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 3 1657 234 0 0 0 chr6 140608423 140608449 -8908588 + (CCCCCT)n Simple_repeat Simple_repeat 3 28 0 3 1657 688 294 0 0 chr6 140608452 140608612 -8908425 + T-rich Low_complexity Low_complexity 17 176 0 3 1657 906 36 0 0 chr6 140608612 140608722 -8908315 + (TTTCC)n Simple_repeat Simple_repeat 1 110 0 3 1657 774 179 28 14 chr6 140608723 140608865 -8908172 - B1_Mur4 SINE Alu -6 144 1 3 1657 722 122 35 0 chr6 140608994 140609109 -8907928 - PB1D9 SINE Alu 0 120 2 3 1657 281 326 21 0 chr6 140609358 140609453 -8907584 + B1F SINE Alu 1 97 -52 3 1657 269 243 0 54 chr6 140609516 140609590 -8907447 - B1_Mur3 SINE Alu -79 70 1 3 1657 375 238 24 0 chr6 140610123 140610207 -8906830 + B1_Mus2 SINE Alu 56 141 -6 3 1657 1152 34 7 7 chr6 140610246 140610392 -8906645 + B1_Mus2 SINE Alu 2 147 0 3 1657 400 217 53 86 chr6 140610432 140610583 -8906454 - B3A SINE B2 -16 182 37 3 1657 279 289 53 0 chr6 140610608 140610684 -8906353 - MTEa LTR MaLR -227 152 73 3 1657 317 131 317 20 chr6 140611173 140611274 -8905763 - B2_Mm2 SINE B2 -18 177 47 3 1657 1310 59 59 0 chr6 140611322 140611491 -8905546 - B2_Mm1t SINE B2 -14 179 1 3 1657 1378 69 16 21 chr6 140612061 140612254 -8904783 - B2_Mm2 SINE B2 -2 193 2 3 1657 21 0 0 0 chr6 140612289 140612310 -8904727 + AT_rich Low_complexity Low_complexity 1 21 0 3 1657 446 313 53 15 chr6 140612834 140612967 -8904070 - RSINE1 SINE B4 0 165 28 3 1657 435 224 145 46 chr6 140612946 140613077 -8903960 + B1_Mur4 SINE Alu 7 150 0 3 1657 891 243 5 0 chr6 140613120 140613305 -8903732 + B3 SINE B2 1 186 -30 3 1657 875 228 63 79 chr6 140613301 140613553 -8903484 + MTE2a LTR MaLR 132 379 0 3 1657 520 276 8 16 chr6 140613648 140613773 -8903264 - B1F SINE Alu -1 148 25 3 1657 776 234 85 21 chr6 140613775 140613963 -8903074 - B4A SINE B4 -82 210 11 3 1657 222 91 0 0 chr6 140613963 140613996 -8903041 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1657 1030 246 9 0 chr6 140614017 140614228 -8902809 + B3 SINE B2 1 213 -3 3 1657 270 0 0 0 chr6 140614286 140614316 -8902721 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1657 290 250 0 15 chr6 140615147 140615212 -8901825 - Tigger16b DNA Tigger -211 126 63 3 1657 192 40 0 0 chr6 140615858 140615883 -8901154 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 3 1657 767 132 0 0 chr6 140616469 140616575 -8900462 + B3 SINE B2 1 106 -110 3 1657 348 208 16 53 chr6 140617047 140617138 -8899899 - B1_Mur3 SINE Alu -34 116 22 3 1657 340 212 70 70 chr6 140617193 140617279 -8899758 + PB1D9 SINE Alu 26 111 -9 3 1657 246 62 0 0 chr6 140617284 140617316 -8899721 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 3 1657 305 228 40 95 chr6 140617427 140617553 -8899484 - B1F1 SINE Alu -1 148 30 3 1657 856 249 16 5 chr6 140617665 140617855 -8899182 - B3A SINE B2 -5 193 2 3 1657 426 233 50 50 chr6 140618912 140619052 -8897985 + RMER15 LTR ERVL 405 544 -31 3 1657 249 232 12 138 chr6 140619370 140619450 -8897587 + MTEb LTR MaLR 109 178 -201 3 1657 888 147 22 14 chr6 140619742 140620192 -8896845 + (TATG)n Simple_repeat Simple_repeat 1 454 0 3 1657 460 270 160 96 chr6 140620195 140620405 -8896632 - RSINE1 SINE B4 0 292 1 3 1657 345 247 0 0 chr6 140620476 140620553 -8896484 - B3A SINE B2 -121 77 1 3 1657 315 0 0 0 chr6 140621259 140621294 -8895743 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1657 22 0 0 0 chr6 140621318 140621340 -8895697 + AT_rich Low_complexity Low_complexity 1 22 0 3 1657 440 286 107 13 chr6 140621418 140621567 -8895470 + RSINE1 SINE B4 3 165 0 3 1657 354 91 0 0 chr6 140621581 140621636 -8895401 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1657 225 0 0 0 chr6 140621635 140621660 -8895377 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 1657 405 53 70 0 chr6 140621674 140621731 -8895306 + HAL1-3A_ME LINE L1 1976 2036 -822 3 1657 233 276 0 0 chr6 140622568 140622626 -8894411 + CT-rich Low_complexity Low_complexity 4 61 0 3 1657 332 319 43 26 chr6 140622628 140622744 -8894293 - PB1D7 SINE Alu 0 120 3 3 1657 243 241 52 0 chr6 140623114 140623172 -8893865 + ID4_ SINE ID 21 81 -2 3 1657 853 150 22 15 chr6 140623324 140623918 -8893119 + (TG)n Simple_repeat Simple_repeat 1 598 0 3 1657 574 197 206 33 chr6 140624004 140624188 -8892849 - B3 SINE B2 0 216 1 3 1657 549 0 0 0 chr6 140624202 140624263 -8892774 + (TAAA)n Simple_repeat Simple_repeat 1 61 0 3 1657 1332 98 38 0 chr6 140624470 140624654 -8892383 + B2_Mm2 SINE B2 2 192 -3 3 1657 292 336 33 8 chr6 140625162 140625282 -8891755 - B1_Mur4 SINE Alu -9 141 19 3 1657 678 243 0 20 chr6 140625305 140625456 -8891581 + B1_Mur2 SINE Alu 2 149 0 3 1657 397 268 160 42 chr6 140625519 140625663 -8891374 - RSINE1 SINE B4 -2 163 3 3 1657 240 143 0 0 chr6 140625680 140625722 -8891315 + (TCCCC)n Simple_repeat Simple_repeat 2 43 0 3 1657 230 200 22 0 chr6 140626890 140626935 -8890102 + PB1D10 SINE Alu 72 117 0 3 1657 396 233 75 2 chr6 140627990 140628102 -8888935 + PB1D7 SINE Alu 2 124 -3 3 1657 223 200 22 0 chr6 140628126 140628213 -8888824 + GA-rich Low_complexity Low_complexity 1 88 0 3 1657 818 197 152 14 chr6 140628213 140628424 -8888613 - RMER1B Other Other -45 1021 782 3 1657 689 211 22 31 chr6 140628568 140628718 -8888319 + B3 SINE B2 39 192 -3 3 1657 493 305 8 22 chr6 140628718 140628852 -8888185 + RSINE1 SINE B4 9 140 -25 3 1657 654 49 0 0 chr6 140628868 140628950 -8888087 + (CATA)n Simple_repeat Simple_repeat 2 83 0 3 1657 399 235 30 30 chr6 140629099 140629200 -8887837 + B3A SINE B2 2 102 -96 3 1657 238 252 6 0 chr6 140629528 140629597 -8887440 + B3A SINE B2 97 165 -51 3 1657 1161 125 17 0 chr6 140629769 140629945 -8887092 + B2_Mm1t SINE B2 1 179 -14 3 1657 416 91 15 3 chr6 140629987 140630093 -8886944 + B2_Mm2 SINE B2 47 190 -5 3 1657 1240 53 98 12 chr6 140630096 140630269 -8886768 + B2_Mm2 SINE B2 2 189 -6 3 1657 510 269 0 42 chr6 140630370 140630490 -8886547 - PB1D10 SINE Alu -2 115 1 3 1657 367 298 43 0 chr6 140630720 140630814 -8886223 + RSINE1 SINE B4 68 165 0 3 1657 2902 88 9 9 chr6 140630818 140631240 -8885797 + BGLII_Mus LTR ERVK 1 422 0 3 1657 264 254 44 15 chr6 140631280 140631348 -8885689 + B3A SINE B2 4 73 -125 3 1657 188 229 0 32 chr6 140631792 140631855 -8885182 + CT-rich Low_complexity Low_complexity 3 63 0 3 1657 710 258 17 61 chr6 140632158 140632389 -8884648 - ID_B1 SINE B4 -2 222 2 3 1657 1096 275 29 12 chr6 140632919 140633261 -8883776 + ORR1E LTR MaLR 12 359 0 3 1657 1020 151 122 25 chr6 140633379 140633583 -8883454 - URR1A DNA MER1_type 0 226 3 3 1657 1470 68 21 0 chr6 140633590 140633780 -8883257 - B2_Mm2 SINE B2 -1 194 1 3 1657 570 299 0 15 chr6 140634219 140634355 -8882682 + RSINE1 SINE B4 4 137 -28 3 1657 420 233 0 11 chr6 140634475 140634562 -8882475 - ID_B1 SINE B4 -2 222 137 3 1657 25 51 0 0 chr6 140635236 140635275 -8881762 + AT_rich Low_complexity Low_complexity 1 39 0 3 1657 327 104 0 0 chr6 140635335 140635383 -8881654 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1657 317 286 83 67 chr6 140635390 140635570 -8881467 - L1MC LINE L1 -2884 3262 3080 3 1657 546 278 58 17 chr6 140635589 140635761 -8881276 - B3A SINE B2 -18 180 2 3 1657 379 254 82 0 chr6 140635782 140635892 -8881145 - PB1D9 SINE Alu 0 120 2 3 1657 1479 82 0 5 chr6 140635900 140636095 -8880942 - B2_Mm2 SINE B2 0 195 2 3 1657 180 111 0 0 chr6 140636858 140636885 -8880152 + (TTCTCC)n Simple_repeat Simple_repeat 5 31 0 3 1657 391 266 71 16 chr6 140637110 140637236 -8879801 + B3 SINE B2 70 202 -14 3 1657 818 269 5 14 chr6 140637266 140637428 -8879609 + B3 SINE B2 4 164 -52 3 1657 471 78 0 0 chr6 140637428 140637492 -8879545 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1657 818 269 5 14 chr6 140637492 140637544 -8879493 + B3 SINE B2 165 216 0 3 1657 916 271 62 35 chr6 140637876 140638136 -8878901 + B4A SINE B4 24 290 -2 3 1657 326 186 17 0 chr6 140638591 140638650 -8878387 - MLT1N2 LTR MaLR -68 494 435 3 1657 228 243 93 13 chr6 140639823 140639898 -8877139 - LTR48 LTR ERV1 -92 695 615 3 1658 1201 311 5 14 chr6 140640626 140641040 -8875997 + L1_Rod LINE L1 5435 5844 -3 3 1658 1620 25 0 0 chr6 140641086 140641497 -8875540 + (TG)n Simple_repeat Simple_repeat 1 411 0 3 1658 2494 134 13 3 chr6 140641969 140642351 -8874686 + ORR1B1 LTR MaLR 1 386 -8 3 1658 1096 131 86 0 chr6 140642356 140642531 -8874506 + B2_Mm2 SINE B2 1 190 -5 3 1658 387 123 358 0 chr6 140642684 140642765 -8874272 + B1_Mus1 SINE Alu 2 111 -37 3 1658 692 167 179 28 chr6 140642862 140643041 -8873996 + B3 SINE B2 2 207 -9 3 1658 1313 20 0 0 chr6 140643236 140643383 -8873654 + B1_Mm SINE Alu 1 147 0 4 1658 324 248 164 9 chr6 140643549 140643659 -8873378 + B1F SINE Alu 20 146 -3 4 1658 634 174 11 0 chr6 140643743 140643935 -8873102 + (TG)n Simple_repeat Simple_repeat 1 194 0 4 1658 310 276 352 47 chr6 140643935 140644148 -8872889 - B4A SINE B4 0 292 15 4 1658 765 218 53 58 chr6 140645402 140645592 -8871445 - B3A SINE B2 -4 194 6 4 1658 286 291 86 0 chr6 140645584 140645684 -8871353 - PB1D7 SINE Alu -5 115 8 4 1658 961 296 39 14 chr6 140645687 140645704 -8871333 - B4A SINE B4 0 292 275 4 1658 279 54 0 0 chr6 140645704 140645741 -8871296 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1658 961 296 39 14 chr6 140645741 140646007 -8871030 - B4A SINE B4 -18 274 2 4 1658 970 116 7 40 chr6 140646206 140646358 -8870679 + B1_Mur2 SINE Alu 1 147 -2 4 1658 218 243 170 119 chr6 140646388 140646413 -8870624 - B2_Mm1a SINE B2 -11 182 16 4 1658 696 218 15 8 chr6 140646413 140646547 -8870490 - RSINE1 SINE B4 -14 151 17 4 1658 1600 37 5 0 chr6 140647003 140647192 -8869845 + B2_Mm1t SINE B2 2 191 -2 4 1658 302 266 13 0 chr6 140647247 140647326 -8869711 + L1MC4 LINE L1 6828 6907 -1135 4 1658 728 240 30 54 chr6 140647569 140647772 -8869265 - B3A SINE B2 0 198 1 4 1658 369 338 19 50 chr6 140647819 140647978 -8869059 + B4A SINE B4 33 186 -106 4 1658 202 283 0 16 chr6 140647989 140648050 -8868987 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1658 7019 40 0 6 chr6 140648069 140648894 -8868143 - RLTR13B2 LTR ERVK 0 822 3 4 1658 618 254 92 125 chr6 140649175 140649567 -8867470 + MTE2a LTR MaLR 1 379 0 4 1658 543 227 45 0 chr6 140650321 140650431 -8866606 - B1F SINE Alu -7 142 28 4 1658 460 262 149 6 chr6 140650623 140650784 -8866253 + ID_B1 SINE B4 1 184 -40 4 1658 384 282 18 9 chr6 140652664 140652775 -8864262 + PB1 SINE Alu 1 112 -15 4 1658 267 31 0 0 chr6 140652777 140652809 -8864228 + (CAGT)n Simple_repeat Simple_repeat 3 34 0 4 1658 715 282 17 22 chr6 140653366 140653547 -8863490 + B3A SINE B2 1 180 -18 4 1658 1053 171 48 10 chr6 140654465 140654672 -8862365 - B3 SINE B2 0 216 2 4 1658 706 212 96 0 chr6 140654711 140654857 -8862180 + B3 SINE B2 43 202 -14 4 1658 471 130 0 0 chr6 140655348 140655425 -8861612 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1658 650 247 222 13 chr6 140655434 140655664 -8861373 - B4 SINE B4 -12 280 3 4 1658 1031 229 142 3 chr6 140656060 140656384 -8860653 - MTEa LTR MaLR -10 369 1 4 1658 294 309 122 22 chr6 140656398 140656537 -8860500 - MER34 LTR ERV1 -72 470 318 4 1658 243 0 0 0 chr6 140657059 140657086 -8859951 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1658 346 309 0 31 chr6 140657234 140657331 -8859706 + C-rich Low_complexity Low_complexity 4 97 0 4 1658 374 100 17 0 chr6 140657443 140657503 -8859534 + (CAA)n Simple_repeat Simple_repeat 2 62 0 4 1658 434 214 53 67 chr6 140657533 140657683 -8859354 + B1F SINE Alu 1 148 -1 4 1658 536 254 175 6 chr6 140658330 140658496 -8858541 + B3A SINE B2 2 195 -3 4 1658 1093 75 7 20 chr6 140658513 140658662 -8858375 - B1_Mus2 SINE Alu 0 147 1 4 1658 1153 95 0 0 chr6 140659433 140659581 -8857456 + B1_Mus1 SINE Alu 1 148 0 4 1658 216 0 0 0 chr6 140659593 140659617 -8857420 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1658 890 107 14 0 chr6 140659621 140659761 -8857276 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 4 1658 346 324 114 70 chr6 140659846 140660118 -8856919 + B4 SINE B4 1 284 -8 4 1658 236 300 111 0 chr6 140660525 140660615 -8856422 + ORR1C1 LTR MaLR 278 377 -1 4 1658 366 190 78 20 chr6 140660681 140660783 -8856254 + RSINE1 SINE B4 23 130 -35 4 1658 29 60 0 0 chr6 140661319 140661369 -8855668 + AT_rich Low_complexity Low_complexity 1 50 0 4 1658 432 237 33 61 chr6 140661606 140661622 -8855415 - L1M2 LINE L1 -2884 3262 3248 4 1658 3482 33 0 0 chr6 140661622 140662018 -8855019 + MTA_Mm LTR MaLR 1 396 0 4 1658 572 212 50 14 chr6 140662018 140662181 -8854856 - L1M2 LINE L1 -2899 3247 3082 4 1658 23 78 0 0 chr6 140662344 140662395 -8854642 + AT_rich Low_complexity Low_complexity 1 51 0 4 1658 581 239 144 0 chr6 140662395 140662575 -8854462 - B3 SINE B2 -10 206 1 4 1658 1146 88 0 0 chr6 140663124 140663271 -8853766 - B1_Mus2 SINE Alu 0 147 1 4 1658 859 204 0 0 chr6 140663480 140663632 -8853405 - RSINE1 SINE B4 -10 155 4 4 1658 536 286 125 40 chr6 140664260 140664460 -8852577 + MLT2C1 LTR ERVL 60 276 -121 4 1658 372 287 109 27 chr6 140664852 140664999 -8852038 - MER57E1 LTR ERV1 -213 159 1 4 1658 1149 58 0 0 chr6 140665393 140665531 -8851506 + B1_Mus1 SINE Alu 1 138 -10 4 1658 225 0 0 0 chr6 140665531 140665556 -8851481 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1658 21 0 0 0 chr6 140665680 140665701 -8851336 + AT_rich Low_complexity Low_complexity 1 21 0 4 1658 273 146 0 0 chr6 140665705 140665753 -8851284 + (CACCAT)n Simple_repeat Simple_repeat 6 53 0 4 1658 1200 106 72 11 chr6 140665808 140665989 -8851048 - B2_Mm2 SINE B2 -3 192 1 4 1658 1930 160 112 18 chr6 140665990 140666354 -8850683 + MTC LTR MaLR 3 404 -17 4 1658 2298 85 31 12 chr6 140666354 140666675 -8850362 + ORR1A2 LTR MaLR 1 327 0 4 1658 1930 160 112 18 chr6 140666675 140666693 -8850344 + MTC LTR MaLR 405 421 0 4 1658 279 319 113 21 chr6 140666916 140667057 -8849980 + MLT1C LTR MaLR 311 464 -3 4 1658 496 314 48 18 chr6 140667181 140667408 -8849629 + LTR40b LTR ERVL 190 423 -39 4 1658 2055 116 109 11 chr6 140667619 140667978 -8849059 - ORR1B1 LTR MaLR 0 394 1 4 1658 1002 194 70 0 chr6 140668014 140668215 -8848822 - B3 SINE B2 -1 215 1 4 1658 280 242 15 15 chr6 140668532 140668599 -8848438 - RCHARR1 DNA MER1_type -8 966 900 4 1658 788 270 81 94 chr6 140668598 140668674 -8848363 - MTEb LTR MaLR -12 367 313 4 1658 209 33 33 0 chr6 140668674 140668704 -8848333 + (CAGG)n Simple_repeat Simple_repeat 1 31 0 4 1658 788 270 81 94 chr6 140668704 140668999 -8848038 - MTEb LTR MaLR -67 312 1 4 1658 2089 219 118 26 chr6 140669001 140669070 -8847967 - RCHARR1 DNA MER1_type -71 903 842 4 1658 575 191 34 25 chr6 140669070 140669188 -8847849 - PB1D9 SINE Alu -1 119 1 4 1658 2089 219 118 26 chr6 140669188 140669475 -8847562 - RCHARR1 DNA MER1_type -133 841 519 4 1658 219 36 0 0 chr6 140669475 140669503 -8847534 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 4 1658 2089 219 118 26 chr6 140669503 140669755 -8847282 - RCHARR1 DNA MER1_type -456 518 239 4 1658 181 262 0 0 chr6 140669856 140669898 -8847139 - L2b LINE L2 -15 3360 3319 4 1658 444 210 0 0 chr6 140670411 140670492 -8846545 - B3A SINE B2 -83 115 35 4 1658 237 260 0 0 chr6 140671016 140671066 -8845971 + L1MA5 LINE L1 6219 6268 -32 4 1658 262 293 68 39 chr6 140671129 140671232 -8845805 + B1F SINE Alu 3 108 -41 4 1658 352 248 214 0 chr6 140671577 140671722 -8845315 + B4A SINE B4 1 176 -116 4 1658 245 98 0 24 chr6 140671724 140671766 -8845271 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 4 1658 952 104 0 15 chr6 140671766 140671902 -8845135 - B1_Mus2 SINE Alu -12 135 2 4 1658 432 51 0 0 chr6 140672041 140672100 -8844937 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1658 225 65 0 0 chr6 140672326 140672357 -8844680 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1658 3301 159 72 5 chr6 140672380 140672987 -8844050 - Lx LINE L1 -6 6648 6001 4 1658 554 172 0 10 chr6 140672987 140673087 -8843950 - RSINE1 SINE B4 -45 120 22 4 1658 803 273 92 36 chr6 140673392 140673643 -8843394 + B4A SINE B4 1 265 -27 4 1658 594 0 0 0 chr6 140673645 140673711 -8843326 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1658 336 102 0 0 chr6 140673712 140673761 -8843276 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1658 433 269 51 46 chr6 140674138 140674313 -8842724 + LTR37A LTR ERV1 224 399 -27 4 1658 872 206 126 5 chr6 140674323 140674513 -8842524 - B3 SINE B2 0 216 4 4 1658 273 57 0 0 chr6 140674540 140674575 -8842462 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 4 1658 1190 58 2 22 chr6 140674579 140675098 -8841939 + (TG)n Simple_repeat Simple_repeat 1 508 0 4 1658 522 264 52 0 chr6 140675098 140675253 -8841784 - RSINE1 SINE B4 -1 164 2 4 1658 624 172 54 15 chr6 140675278 140675408 -8841629 - B1_Mur1 SINE Alu -1 148 14 4 1658 241 24 73 0 chr6 140675524 140675565 -8841472 + (GGGTG)n Simple_repeat Simple_repeat 3 46 0 4 1658 554 190 313 31 chr6 140675883 140676046 -8840991 - B3 SINE B2 -6 210 2 4 1658 513 313 22 0 chr6 140676191 140676370 -8840667 - B3A SINE B2 -15 183 1 4 1658 278 333 58 26 chr6 140676488 140676679 -8840358 - Tigger12c DNA MER2_type -172 562 366 4 1658 504 135 53 80 chr6 140676706 140676819 -8840218 - B2_Mm2 SINE B2 -2 193 84 4 1658 701 196 83 71 chr6 140676819 140677072 -8839965 - RLTR5_Mm LTR ERV1 0 628 373 4 1658 662 35 0 0 chr6 140677283 140677369 -8839668 - B2_Mm2 SINE B2 -108 87 2 4 1658 888 233 5 25 chr6 140677627 140677825 -8839212 + B3A SINE B2 5 198 0 4 1658 745 258 68 117 chr6 140677929 140678289 -8838748 + ORR1E LTR MaLR 10 369 -10 4 1658 382 251 104 82 chr6 140678401 140678583 -8838454 + MTE2b LTR MaLR 194 379 0 4 1658 272 279 213 0 chr6 140679729 140679743 -8837294 + B1F SINE Alu 1 143 -1 4 1658 378 243 136 0 chr6 140679743 140679846 -8837191 + ID_B1 SINE B4 102 218 -6 4 1658 672 181 38 0 chr6 140680459 140680592 -8836445 - B1_Mur1 SINE Alu 0 149 12 4 1658 378 265 43 87 chr6 140680462 140680623 -8836414 - B4 SINE B4 -69 223 70 4 1658 773 259 12 43 chr6 140680833 140681087 -8835950 - B4A SINE B4 -16 276 31 5 1658 1150 244 22 22 chr6 140681180 140681453 -8835584 + B4A SINE B4 2 274 -18 5 1658 402 94 0 0 chr6 140681482 140681546 -8835491 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1658 406 272 14 10 chr6 140682983 140683094 -8833943 + ID_B1 SINE B4 74 186 -106 5 1658 183 312 91 0 chr6 140683310 140683387 -8833650 + MIRc SINE MIR 113 196 -72 5 1658 21 0 0 0 chr6 140684576 140684597 -8832440 + AT_rich Low_complexity Low_complexity 1 21 0 5 1658 712 253 0 0 chr6 140684597 140684751 -8832286 - RSINE1 SINE B4 -2 163 10 5 1658 888 10 0 0 chr6 140684765 140684866 -8832171 + (TTC)n Simple_repeat Simple_repeat 2 102 0 5 1658 180 0 0 0 chr6 140684881 140684901 -8832136 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1658 4185 24 8 10 chr6 140684957 140685460 -8831577 - L1Md_F2 LINE L1 0 6582 6081 5 1658 314 246 0 0 chr6 140685869 140685934 -8831103 + PB1D10 SINE Alu 45 109 -8 5 1658 1652 37 0 0 chr6 140685944 140686134 -8830903 + B2_Mm1t SINE B2 1 190 -3 5 1658 23 0 0 0 chr6 140686238 140686261 -8830776 + AT_rich Low_complexity Low_complexity 1 23 0 5 1658 882 209 16 0 chr6 140686261 140686443 -8830594 - B3 SINE B2 -4 212 28 5 1658 536 210 10 0 chr6 140686543 140686643 -8830394 - B1F SINE Alu -48 101 1 5 1658 1035 111 14 0 chr6 140686723 140686867 -8830170 - B1_Mus1 SINE Alu 0 148 3 5 1658 1845 112 31 31 chr6 140687079 140687401 -8829636 - RLTRETN_Mm LTR ERVK 0 322 1 5 1658 272 48 24 0 chr6 140687966 140688008 -8829029 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1658 294 212 0 0 chr6 140688008 140688107 -8828930 + GA-rich Low_complexity Low_complexity 2 100 0 5 1658 494 296 0 69 chr6 140688648 140688822 -8828215 - B3A SINE B2 0 198 37 5 1658 202 275 29 14 chr6 140689032 140689102 -8827935 + L2 LINE L2 2369 2439 -980 5 1658 843 290 31 21 chr6 140689186 140689475 -8827562 + MTEa LTR MaLR 1 292 -87 5 1658 1943 169 157 8 chr6 140689854 140690242 -8826795 + RLTR41 LTR ERV1 1 446 0 5 1658 1224 40 0 0 chr6 140690460 140690610 -8826427 + (GA)n Simple_repeat Simple_repeat 1 150 0 5 1658 395 364 19 46 chr6 140691149 140691365 -8825672 - LTR16A LTR ERVL -208 243 34 5 1658 347 141 16 0 chr6 140691791 140691855 -8825182 + CT-rich Low_complexity Low_complexity 1 65 0 5 1658 572 234 23 0 chr6 140691896 140692024 -8825013 - RSINE1 SINE B4 -19 146 16 5 1658 286 261 0 14 chr6 140692702 140692772 -8824265 - RSINE1 SINE B4 -95 70 2 5 1658 422 273 107 7 chr6 140693764 140693904 -8823133 - B4A SINE B4 -102 190 37 5 1658 615 286 94 31 chr6 140693915 140694139 -8822898 + MTE2a-int LTR MaLR 625 862 -718 5 1658 401 262 302 0 chr6 140694159 140694285 -8822752 - RSINE1 SINE B4 0 165 2 5 1658 708 236 21 0 chr6 140694362 140694502 -8822535 + B1_Mur4 SINE Alu 7 149 -1 5 1658 189 0 0 0 chr6 140694598 140694619 -8822418 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 1658 735 12 0 0 chr6 140694619 140694702 -8822335 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 5 1658 301 264 10 62 chr6 140694714 140694811 -8822226 - RSINE1 SINE B4 -40 125 34 5 1658 1083 272 68 32 chr6 140694749 140695099 -8821938 + MTE2a-int LTR MaLR 786 1280 -300 5 1658 354 153 14 14 chr6 140695121 140695194 -8821843 - RLTR25A LTR ERVK 0 1028 956 5 1658 888 114 14 123 chr6 140695205 140695425 -8821612 - RLTR25A LTR ERVK -224 804 609 5 1658 2771 170 53 15 chr6 140695731 140695984 -8821053 - RLTR25A LTR ERVK -392 636 330 5 1658 186 43 0 0 chr6 140695984 140696007 -8821030 + (TA)n Simple_repeat Simple_repeat 2 24 0 5 1658 216 0 0 0 chr6 140696008 140696032 -8821005 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1658 2771 164 51 17 chr6 140696032 140696338 -8820699 - RLTR25A LTR ERVK -774 329 1 5 1658 650 241 183 24 chr6 140696342 140696593 -8820444 + MTE2a-int LTR MaLR 1290 1580 0 5 1658 1161 208 188 9 chr6 140696595 140696915 -8820122 + MTE2a LTR MaLR 3 379 0 5 1658 733 277 153 17 chr6 140696962 140697413 -8819624 - L1M4 LINE L1 -582 5598 5064 5 1658 1987 152 185 21 chr6 140697413 140697796 -8819241 - RLTR41 LTR ERV1 0 446 1 5 1658 509 327 123 29 chr6 140697796 140698141 -8818896 - L1M4 LINE L1 -1083 5063 4700 5 1658 327 340 101 40 chr6 140698656 140698953 -8818084 - LTR16A LTR ERVL -40 411 97 5 1658 1334 225 42 104 chr6 140699642 140700044 -8816993 - MTE2a LTR MaLR 0 379 3 5 1658 281 188 29 0 chr6 140700049 140700118 -8816919 + G-rich Low_complexity Low_complexity 4 74 0 5 1658 910 228 19 23 chr6 140700262 140700478 -8816559 + B3 SINE B2 2 216 0 5 1658 321 287 26 146 chr6 140701354 140701546 -8815491 + RMER15 LTR ERVL 1 169 -406 5 1658 745 259 137 26 chr6 140701532 140701714 -8815323 + RMER15 LTR ERVL 276 489 -86 5 1658 3560 30 136 0 chr6 140701714 140702148 -8814889 + MT2_Mm LTR ERVL 1 493 0 5 1658 745 259 137 26 chr6 140702148 140702235 -8814802 + RMER15 LTR ERVL 490 575 0 5 1658 821 165 272 0 chr6 140702537 140702761 -8814276 - MT2A LTR ERVL 0 533 249 5 1658 2679 178 29 15 chr6 140702766 140703313 -8813724 + RLTR31_Mm LTR ERVK 1 555 -6 5 1658 1435 132 13 17 chr6 140703321 140703560 -8813477 - MT2A LTR ERVL -293 240 3 5 1658 294 266 21 11 chr6 140704620 140704715 -8812322 - PB1D10 SINE Alu -21 96 1 5 1658 688 241 73 22 chr6 140704900 140705078 -8811959 - B3A SINE B2 -11 187 1 5 1658 2294 82 3 9 chr6 140705249 140705568 -8811469 - L1Md_F2 LINE L1 0 6582 6266 5 1658 1751 16 0 0 chr6 140705591 140705784 -8811253 - B2_Mm1a SINE B2 0 193 1 5 1658 533 301 10 63 chr6 140706312 140706518 -8810519 - B3A SINE B2 -3 195 1 5 1658 441 0 0 0 chr6 140706665 140706714 -8810323 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1658 576 0 0 0 chr6 140706714 140706777 -8810260 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 1658 2037 88 0 62 chr6 140706961 140707286 -8809751 + ORR1A4 LTR MaLR 1 305 -24 5 1658 259 59 0 0 chr6 140707283 140707317 -8809720 - U2 snRNA snRNA -154 34 1 5 1658 274 79 0 0 chr6 140707316 140707354 -8809683 + ORR1A4 LTR MaLR 288 325 -4 5 1658 896 172 0 14 chr6 140707409 140707556 -8809481 + B1_Mur2 SINE Alu 2 146 -3 5 1658 864 250 33 49 chr6 140707633 140707946 -8809091 + MTEa LTR MaLR 10 314 -65 5 1658 343 178 65 32 chr6 140708096 140708189 -8808848 - RMER12 LTR ERVK -135 1187 1092 5 1658 5666 117 10 9 chr6 140708241 140709147 -8807890 - RMER12 LTR ERVK -411 911 5 5 1658 383 192 0 0 chr6 140709148 140709221 -8807816 + MTEa LTR MaLR 307 379 0 5 1658 1097 186 278 14 chr6 140710374 140710540 -8806497 - ORR1D1 LTR MaLR 0 374 178 5 1658 255 31 0 0 chr6 140710540 140710572 -8806465 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1658 1097 186 278 14 chr6 140710572 140710700 -8806337 - ORR1D1 LTR MaLR -197 177 2 5 1658 804 251 24 24 chr6 140710701 140710909 -8806128 - ID_B1 SINE B4 -16 208 1 5 1658 699 275 32 45 chr6 140711074 140711295 -8805742 + B4 SINE B4 68 285 -7 5 1658 1015 237 58 85 chr6 140711323 140711821 -8805216 + MT2B LTR ERVL 3 553 -48 5 1658 202 200 0 43 chr6 140711821 140711868 -8805169 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 5 1658 573 255 14 7 chr6 140712958 140713104 -8803933 + B1F1 SINE Alu 3 149 0 5 1658 427 293 32 32 chr6 140713117 140713272 -8803765 + RSINE1 SINE B4 11 165 0 5 1658 959 287 29 25 chr6 140713844 140714123 -8802914 - B4A SINE B4 -4 288 9 5 1658 2567 161 32 31 chr6 140714194 140714843 -8802194 + RLTR31_Mm LTR ERVK 1 561 0 5 1658 609 14 0 0 chr6 140716618 140716688 -8800349 + (GA)n Simple_repeat Simple_repeat 2 71 0 5 1658 1173 111 37 47 chr6 140717047 140717237 -8799800 + B2_Mm2 SINE B2 4 191 -4 5 1658 21 0 0 0 chr6 140718261 140718282 -8798755 + AT_rich Low_complexity Low_complexity 1 21 0 5 1658 221 191 24 0 chr6 140718289 140718331 -8798706 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1658 1062 235 14 5 chr6 140718476 140718690 -8798347 + B3 SINE B2 1 216 0 5 1658 476 257 14 14 chr6 140718897 140719035 -8798002 - ID_B1 SINE B4 0 224 87 5 1658 3225 50 17 15 chr6 140719471 140719877 -8797160 + MTB_Mm LTR MaLR 1 407 0 5 1658 2165 266 55 26 chr6 140719897 140720274 -8796763 - RMER1C Other Other -346 996 603 5 1658 2460 75 16 0 chr6 140720274 140720596 -8796441 + ORR1A2 LTR MaLR 1 327 0 5 1658 2165 266 55 26 chr6 140720596 140720805 -8796232 - RMER1C Other Other -740 602 393 5 1658 188 111 28 0 chr6 140720808 140720844 -8796193 + (TGGGGG)n Simple_repeat Simple_repeat 1 37 0 5 1658 270 130 56 0 chr6 140720857 140720911 -8796126 + MTC LTR MaLR 27 83 -338 5 1658 837 165 0 58 chr6 140720911 140721085 -8795952 - Lx5 LINE L1 -1173 5877 5714 5 1658 2184 218 89 15 chr6 140721077 140721681 -8795356 + Lx5 LINE L1 5863 6728 -732 5 1658 237 178 243 14 chr6 140721695 140721769 -8795268 + RLTR12B LTR ERVK 11 101 -427 5 1658 318 264 78 86 chr6 140721848 140722110 -8794927 + RLTR12B LTR ERVK 252 511 -17 5 1658 429 20 0 0 chr6 140722110 140722160 -8794877 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1658 1922 277 74 8 chr6 140722173 140722697 -8794340 + Lx5 LINE L1 6456 7014 -36 5 1658 1585 147 159 3 chr6 140722719 140723040 -8793997 + MTC LTR MaLR 51 421 0 5 1658 340 266 72 105 chr6 140723044 140723078 -8793959 - B2_Mm2 SINE B2 -12 183 154 5 1658 447 19 0 0 chr6 140723078 140723130 -8793907 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1658 659 262 42 1 chr6 140723130 140723276 -8793761 - B3A SINE B2 -39 159 9 5 1658 728 257 0 5 chr6 140723283 140723467 -8793570 - MTE2b LTR MaLR -196 183 1 5 1658 489 238 95 0 chr6 140724051 140724177 -8792860 + ID_B1 SINE B4 82 219 -5 5 1658 314 280 57 57 chr6 140724381 140724521 -8792516 - RMER30 DNA MER1_type 0 202 63 5 1658 237 274 0 161 chr6 140724412 140724535 -8792502 + Charlie12 DNA MER1_type 40 136 -2737 5 1658 770 201 39 73 chr6 140724535 140724739 -8792298 - B3A SINE B2 0 198 2 5 1658 237 274 0 161 chr6 140724739 140724776 -8792261 + Charlie12 DNA MER1_type 137 173 -2700 5 1658 598 292 59 25 chr6 140725519 140725758 -8791279 - B4A SINE B4 0 292 46 5 1658 866 274 19 53 chr6 140725871 140726191 -8790846 - MTEa LTR MaLR -10 369 61 5 1658 897 167 189 0 chr6 140726431 140726521 -8790516 - Lx8 LINE L1 -9 7464 7330 5 1658 261 0 0 0 chr6 140726521 140726550 -8790487 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1658 897 291 36 25 chr6 140726550 140726760 -8790277 - Lx8 LINE L1 -144 7329 7114 5 1658 1226 151 19 0 chr6 140726887 140727093 -8789944 - B3 SINE B2 0 216 7 5 1658 447 292 41 152 chr6 140727461 140727775 -8789262 + B4 SINE B4 2 282 -10 5 1658 783 205 145 5 chr6 140728223 140728409 -8788628 + B3 SINE B2 5 216 0 5 1658 601 248 0 0 chr6 140728418 140728539 -8788498 + B3A SINE B2 3 123 -75 6 1658 262 300 75 20 chr6 140728759 140728928 -8788109 - MIR3 SINE MIR -85 183 6 6 1658 922 247 116 21 chr6 140729169 140729549 -8787488 - RMER5 LTR ERV1 -49 485 70 6 1658 724 273 6 6 chr6 140730634 140730811 -8786226 + B4 SINE B4 51 227 -65 6 1658 933 232 14 19 chr6 140730811 140731018 -8786019 + B3 SINE B2 1 206 -10 6 1658 527 327 6 6 chr6 140731062 140731576 -8785461 + (CA)n Simple_repeat Simple_repeat 1 514 0 6 1658 213 404 9 0 chr6 140731502 140731616 -8785421 + (TATATG)n Simple_repeat Simple_repeat 5 119 0 6 1658 2156 162 362 38 chr6 140732347 140732961 -8784076 + RMER1B Other Other 58 870 -196 6 1658 829 236 11 6 chr6 140733653 140733832 -8783205 - B3A SINE B2 -18 180 1 6 1658 313 232 9 83 chr6 140733836 140733944 -8783093 + MTEb LTR MaLR 6 105 -274 6 1658 1108 252 86 7 chr6 140734061 140734365 -8782672 - ORR1D2 LTR MaLR -3 367 40 6 1658 366 23 0 0 chr6 140734468 140734511 -8782526 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1658 578 280 19 6 chr6 140735056 140735214 -8781823 - RSINE1 SINE B4 -2 163 4 6 1658 1422 61 0 3 chr6 140735258 140735619 -8781418 + (CA)n Simple_repeat Simple_repeat 1 359 0 6 1658 308 292 19 9 chr6 140735621 140735728 -8781309 + (TA)n Simple_repeat Simple_repeat 1 108 0 6 1658 295 263 81 31 chr6 140735728 140735889 -8781148 - RLTR21 LTR ERVK -318 1254 1086 6 1658 205 194 0 0 chr6 140735890 140735926 -8781111 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 6 1658 274 306 29 43 chr6 140736186 140736295 -8780742 + B1F2 SINE Alu 1 104 -13 6 1658 598 285 32 0 chr6 140736514 140736672 -8780365 - RSINE1 SINE B4 0 165 3 6 1658 692 226 0 0 chr6 140737385 140737522 -8779515 + B1_Mur1 SINE Alu 1 137 -12 6 1658 1176 95 0 0 chr6 140737525 140737693 -8779344 + (CAAGC)n Simple_repeat Simple_repeat 1 168 0 6 1658 403 155 71 12 chr6 140737987 140738072 -8778965 - B3 SINE B2 -125 91 2 6 1658 1126 156 36 14 chr6 140738601 140738822 -8778215 + Lx4A LINE L1 6833 7058 0 6 1658 262 267 55 37 chr6 140738890 140738999 -8778038 - Lx9 LINE L1 -267 7377 7267 6 1658 1090 199 5 0 chr6 140739469 140739670 -8777367 + B3 SINE B2 5 206 -10 6 1658 2489 147 40 8 chr6 140739711 140740089 -8776948 - RLTR31_Mm LTR ERVK -71 490 97 6 1658 504 32 0 0 chr6 140740089 140740151 -8776886 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1658 2489 147 40 8 chr6 140740151 140740247 -8776790 - RLTR31_Mm LTR ERVK -465 96 2 6 1658 340 164 0 0 chr6 140740248 140740303 -8776734 - B3 SINE B2 -161 55 1 6 1658 2299 121 24 0 chr6 140740551 140740889 -8776148 + ORR1A1 LTR MaLR 1 346 0 6 1658 1042 44 0 0 chr6 140741253 140741388 -8775649 + B1_Mm SINE Alu 10 144 -3 6 1658 682 167 9 0 chr6 140741422 140741536 -8775501 + B3 SINE B2 1 115 -101 6 1658 3236 67 2 12 chr6 140741563 140741972 -8775065 - MTB_Mm LTR MaLR 0 407 3 6 1658 813 321 65 34 chr6 140742028 140742473 -8774564 + L1MB8 LINE L1 5538 5996 -182 6 1658 1393 206 52 106 chr6 140742533 140742956 -8774081 + MTD LTR MaLR 20 419 0 6 1658 7055 60 8 9 chr6 140743002 140743899 -8773138 + L1Md_F2 LINE L1 5686 6581 -1 6 1658 333 0 0 0 chr6 140743943 140743980 -8773057 + (CAA)n Simple_repeat Simple_repeat 2 38 0 6 1658 300 258 34 89 chr6 140744169 140744365 -8772672 - B3 SINE B2 0 216 3 6 1658 446 61 0 15 chr6 140744400 140744467 -8772570 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1658 292 272 19 115 chr6 140744676 140744884 -8772153 - Ricksha DNA MuDR -3049 197 10 6 1658 1218 67 0 0 chr6 140745188 140745353 -8771684 + (TG)n Simple_repeat Simple_repeat 2 166 0 6 1658 2497 161 4 34 chr6 140745363 140745618 -8771419 - MT2A LTR ERVL -72 461 220 6 1658 3221 50 8 2 chr6 140745618 140746016 -8771021 + MTB LTR MaLR 1 400 0 6 1658 2497 161 4 34 chr6 140746016 140746235 -8770802 - MT2A LTR ERVL -314 219 1 6 1658 648 0 0 0 chr6 140746396 140746468 -8770569 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 6 1658 1110 90 0 0 chr6 140746468 140746646 -8770391 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 6 1658 939 155 37 11 chr6 140746654 140746843 -8770194 - B2_Mm2 SINE B2 0 195 2 6 1658 368 97 16 0 chr6 140746859 140746921 -8770116 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1658 754 229 50 6 chr6 140747500 140747680 -8769357 - B3A SINE B2 -7 191 4 6 1658 1293 239 47 25 chr6 140748476 140748840 -8768197 - MTE2b LTR MaLR -7 372 1 6 1658 671 176 32 0 chr6 140749623 140749748 -8767289 + B1_Mur2 SINE Alu 18 146 -3 6 1658 260 185 108 24 chr6 140749941 140750024 -8767013 + MLT1A1 LTR MaLR 298 387 -21 6 1658 1057 256 75 37 chr6 140750673 140751002 -8766035 + MTD LTR MaLR 1 335 -44 6 1658 982 86 65 0 chr6 140752066 140752205 -8764832 + B1_Mus1 SINE Alu 1 148 0 6 1658 258 146 0 0 chr6 140752212 140752253 -8764784 + B3 SINE B2 1 41 -175 6 1658 1643 123 122 3 chr6 140752276 140752562 -8764475 + Lx LINE L1 6335 6654 0 6 1658 1080 86 7 0 chr6 140752800 140752940 -8764097 - B1_Mur4 SINE Alu -9 141 1 6 1658 511 211 44 0 chr6 140753419 140753533 -8763504 + B1F SINE Alu 31 149 0 6 1658 204 207 17 33 chr6 140753533 140753593 -8763444 + (CAAA)n Simple_repeat Simple_repeat 1 59 0 6 1658 459 333 102 17 chr6 140753684 140753977 -8763060 - LTR31 LTR ERV1 -86 533 216 6 1658 513 0 0 0 chr6 140754107 140754164 -8762873 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1658 384 22 0 0 chr6 140754164 140754208 -8762829 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1658 636 231 113 20 chr6 140755079 140755110 -8761927 - RSINE1 SINE B4 0 165 125 6 1658 204 97 0 0 chr6 140755110 140755141 -8761896 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1658 636 231 113 20 chr6 140755141 140755259 -8761778 - RSINE1 SINE B4 -41 124 2 6 1658 836 182 28 0 chr6 140756040 140756183 -8760854 - B1_Mur1 SINE Alu -2 147 1 6 1658 192 179 0 0 chr6 140756660 140756699 -8760338 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1658 533 185 17 21 chr6 140756877 140757124 -8759913 + (TG)n Simple_repeat Simple_repeat 1 245 0 6 1658 244 250 202 9 chr6 140757768 140757877 -8759160 - MTE2a LTR MaLR -21 358 229 6 1658 1346 46 6 0 chr6 140758785 140758958 -8758079 - L1Md_F2 LINE L1 -1 6581 6408 6 1658 509 219 20 4 chr6 140759156 140759277 -8757760 - B3A SINE B2 -60 138 8 6 1658 217 282 56 0 chr6 140759277 140759348 -8757689 - MIRm SINE MIR -130 146 72 6 1658 194 242 0 15 chr6 140759914 140759981 -8757056 + CT-rich Low_complexity Low_complexity 2 67 0 6 1658 554 269 125 6 chr6 140760053 140760229 -8756808 - B4 SINE B4 -95 197 1 6 1658 23 33 0 0 chr6 140760373 140760403 -8756634 + AT_rich Low_complexity Low_complexity 1 30 0 6 1658 1351 103 299 55 chr6 140760406 140760734 -8756303 - Lx4B LINE L1 -4 7054 6647 6 1658 763 242 0 26 chr6 140760891 140761044 -8755993 - B1_Mur1 SINE Alu 0 149 1 6 1658 5618 35 0 0 chr6 140761773 140762455 -8754582 - L1Md_T LINE L1 0 6582 5930 6 1658 363 264 153 13 chr6 140763061 140763312 -8753725 + MTEb LTR MaLR 78 371 -8 6 1658 215 237 74 62 chr6 140763505 140763586 -8753451 + B3A SINE B2 1 82 -116 6 1658 626 184 6 0 chr6 140763797 140763976 -8753061 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1658 429 237 0 0 chr6 140764004 140764173 -8752864 + (CA)n Simple_repeat Simple_repeat 2 170 0 6 1658 253 239 30 0 chr6 140764173 140764240 -8752797 + (CAGA)n Simple_repeat Simple_repeat 3 71 0 6 1658 663 179 0 0 chr6 140764240 140764419 -8752618 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1658 504 221 129 0 chr6 140766045 140766185 -8750852 + B4A SINE B4 9 166 -126 6 1658 432 55 0 0 chr6 140766987 140767042 -8749995 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 6 1658 281 186 14 0 chr6 140767419 140767489 -8749548 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 1658 335 98 0 16 chr6 140767572 140767634 -8749403 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1658 402 74 0 0 chr6 140767719 140767773 -8749264 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1658 596 79 47 16 chr6 140767773 140767901 -8749136 + (CAGAGA)n Simple_repeat Simple_repeat 3 134 0 6 1658 741 261 139 41 chr6 140768002 140768297 -8748740 - ORR1D2 LTR MaLR -46 324 1 6 1658 823 206 68 14 chr6 140768626 140768833 -8748204 + MMAR1 DNA Mariner 6 223 -1063 6 1658 324 188 0 0 chr6 140768839 140768903 -8748134 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1658 995 269 70 44 chr6 140769052 140769362 -8747675 + MMAR1 DNA Mariner 215 532 -754 6 1658 1672 142 94 18 chr6 140769362 140769691 -8747346 - ORR1B1 LTR MaLR 0 394 41 6 1658 816 276 92 53 chr6 140769703 140769822 -8747215 + MMAR1 DNA Mariner 609 732 -554 6 1658 387 0 0 0 chr6 140769822 140769865 -8747172 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1658 816 276 92 53 chr6 140769865 140770082 -8746955 + MMAR1 DNA Mariner 733 958 -328 6 1658 594 206 106 6 chr6 140770358 140770519 -8746518 + Lx5 LINE L1 6874 7050 0 6 1658 285 151 0 0 chr6 140771156 140771209 -8745828 + (CAT)n Simple_repeat Simple_repeat 1 53 0 6 1659 282 211 99 0 chr6 140771579 140771650 -8745387 - PB1D7 SINE Alu -8 112 35 6 1659 969 266 101 75 chr6 140772256 140773237 -8743800 + L1M2 LINE L1 4571 5610 -681 6 1659 556 329 41 51 chr6 140773939 140774231 -8742806 - B4A SINE B4 -2 290 2 6 1659 2056 123 124 11 chr6 140775126 140775480 -8741557 + ORR1B1 LTR MaLR 1 394 0 6 1659 475 201 66 7 chr6 140775648 140775801 -8741236 + B3 SINE B2 18 186 -9 6 1659 231 329 79 6 chr6 140775823 140775988 -8741049 - MIR SINE MIR -19 243 67 6 1659 210 128 0 0 chr6 140776078 140776117 -8740920 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1659 629 269 73 90 chr6 140776123 140776466 -8740571 - ORR1E LTR MaLR -15 344 8 7 1659 601 164 0 49 chr6 140776512 140776634 -8740403 - B1_Mur3 SINE Alu 0 149 34 7 1659 370 153 0 45 chr6 140776736 140776825 -8740212 + (TATG)n Simple_repeat Simple_repeat 4 88 0 7 1659 182 266 0 12 chr6 140776878 140776958 -8740079 + (TA)n Simple_repeat Simple_repeat 2 80 0 7 1659 24 0 0 0 chr6 140778628 140778652 -8738385 + AT_rich Low_complexity Low_complexity 1 24 0 7 1659 435 258 132 8 chr6 140778652 140778781 -8738256 - B1_Mur2 SINE Alu -3 146 2 7 1659 383 223 50 60 chr6 140778823 140778923 -8738114 - RSINE1 SINE B4 0 165 67 7 1659 438 20 0 0 chr6 140778954 140779005 -8738032 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1659 323 323 60 0 chr6 140779006 140779139 -8737898 - Lx9 LINE L1 -188 7456 7316 7 1659 4084 47 6 8 chr6 140779912 140780424 -8736613 - L1Md_F3 LINE L1 0 6584 6074 7 1659 201 308 0 0 chr6 140780508 140780586 -8736451 + A-rich Low_complexity Low_complexity 80 157 0 7 1659 189 229 0 0 chr6 140780593 140780641 -8736396 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1659 281 124 79 18 chr6 140781390 140781554 -8735483 + (TA)n Simple_repeat Simple_repeat 2 175 0 7 1659 187 176 22 45 chr6 140781539 140781628 -8735409 + (TTATA)n Simple_repeat Simple_repeat 3 89 0 7 1659 198 209 0 0 chr6 140781637 140781680 -8735357 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1659 270 143 0 0 chr6 140781901 140781950 -8735087 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 1659 643 335 48 48 chr6 140782035 140782164 -8734873 - MT2A LTR ERVL -160 373 246 7 1659 585 0 0 0 chr6 140782164 140782229 -8734808 + (CAG)n Simple_repeat Simple_repeat 1 65 0 7 1659 643 335 48 48 chr6 140782229 140782472 -8734565 - MT2A LTR ERVL -288 245 1 7 1659 893 252 147 87 chr6 140782472 140783013 -8734024 - MERVL_2A-int LTR ERVL 0 5761 5188 7 1659 1089 173 82 0 chr6 140783013 140783221 -8733816 + URR1B DNA MER1_type 1 225 0 7 1659 39226 7 0 0 chr6 140783243 140788830 -8728207 + L1Md_A LINE L1 1 5586 -297 7 1659 9142 6 0 0 chr6 140788830 140789826 -8727211 + L1Md_A LINE L1 5587 6582 0 7 1659 1750 291 21 18 chr6 140789826 140790340 -8726697 - MERVL_2A-int LTR ERVL -576 5185 4670 7 1659 653 47 19 19 chr6 140791625 140791733 -8725304 + (TG)n Simple_repeat Simple_repeat 2 109 0 7 1659 425 257 80 0 chr6 140791733 140791846 -8725191 - RSINE1 SINE B4 -41 124 3 7 1659 1933 176 51 20 chr6 140793101 140793400 -8723637 + MTD LTR MaLR 13 326 -93 7 1659 2299 85 32 0 chr6 140793400 140793716 -8723321 - ORR1A2 LTR MaLR -1 326 1 7 1659 1933 176 51 20 chr6 140793716 140793811 -8723226 + MTD LTR MaLR 327 419 0 7 1659 329 224 0 34 chr6 140794092 140794180 -8722857 + MLT2B2 LTR ERVL 2 86 -468 7 1659 423 240 6 25 chr6 140794180 140794338 -8722699 + (TATG)n Simple_repeat Simple_repeat 4 158 0 7 1659 569 254 6 0 chr6 140794357 140794530 -8722507 + (TATG)n Simple_repeat Simple_repeat 2 175 0 7 1659 623 227 0 17 chr6 140794557 140794916 -8722121 + (TATG)n Simple_repeat Simple_repeat 1 353 0 7 1659 239 229 0 0 chr6 140794921 140794969 -8722068 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1659 363 44 0 0 chr6 140794969 140795014 -8722023 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1659 321 26 0 0 chr6 140795014 140795051 -8721986 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1659 976 266 24 73 chr6 140795051 140795380 -8721657 + MTEa LTR MaLR 65 377 -2 7 1659 426 349 101 17 chr6 140795532 140795829 -8721208 + MLT2B2 LTR ERVL 192 513 -2 7 1659 524 259 0 0 chr6 140795930 140796042 -8720995 + PB1D7 SINE Alu 1 112 -8 7 1659 582 264 0 0 chr6 140796284 140796413 -8720624 + B1F2 SINE Alu 6 134 -15 7 1659 1254 95 1 2 chr6 140796417 140796613 -8720424 + (CCAA)n Simple_repeat Simple_repeat 1 195 0 7 1659 675 0 0 0 chr6 140796613 140796688 -8720349 + (CAAG)n Simple_repeat Simple_repeat 1 75 0 7 1659 340 155 12 23 chr6 140796688 140796757 -8720280 + (CCAA)n Simple_repeat Simple_repeat 1 69 0 7 1659 1380 47 0 0 chr6 140797816 140797988 -8719049 + (TTCTC)n Simple_repeat Simple_repeat 1 172 0 7 1659 1857 209 13 42 chr6 140799192 140799577 -8717460 - ORR1D1 LTR MaLR 0 374 1 7 1659 396 256 41 38 chr6 140799577 140799725 -8717312 + MTEb LTR MaLR 144 294 -85 7 1659 730 310 91 48 chr6 140800001 140800441 -8716596 - MER82 DNA MER2_type -29 624 166 7 1659 215 196 43 0 chr6 140801385 140801431 -8715606 + (CATG)n Simple_repeat Simple_repeat 3 50 0 7 1659 596 220 185 0 chr6 140802057 140802230 -8714807 - B3 SINE B2 -11 205 1 7 1659 677 281 78 62 chr6 140803436 140803648 -8713389 - MLT1B LTR MaLR -11 379 161 7 1659 1622 166 168 9 chr6 140803648 140803964 -8713073 - ORR1B2 LTR MaLR -1 366 1 7 1659 677 281 78 62 chr6 140803964 140804123 -8712914 - MLT1B LTR MaLR -230 160 2 7 1659 209 119 24 0 chr6 140804684 140804726 -8712311 + (TGGGGG)n Simple_repeat Simple_repeat 2 44 0 7 1659 324 158 0 0 chr6 140806348 140806405 -8710632 + A-rich Low_complexity Low_complexity 1 57 0 7 1659 806 111 17 34 chr6 140806566 140806593 -8710444 + polypyrimidine Low_complexity Low_complexity 149 174 0 7 1659 477 0 0 0 chr6 140806593 140806646 -8710391 + (TTG)n Simple_repeat Simple_repeat 2 54 0 7 1659 806 111 17 34 chr6 140806646 140806715 -8710322 + polypyrimidine Low_complexity Low_complexity 79 148 0 7 1659 1319 61 0 16 chr6 140806715 140806898 -8710139 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1659 806 111 17 34 chr6 140806898 140806977 -8710060 + polypyrimidine Low_complexity Low_complexity 1 78 0 7 1659 4979 66 18 49 chr6 140807108 140807838 -8709199 - MusHAL1 LINE L1 -60 2652 1946 7 1659 7272 84 44 15 chr6 140807832 140807956 -8709081 - Lx LINE L1 -1 6653 6535 7 1659 252 0 0 0 chr6 140807956 140807984 -8709053 + (CCCA)n Simple_repeat Simple_repeat 2 29 0 7 1659 13615 148 232 9 chr6 140807984 140811853 -8705184 - Lx LINE L1 -120 6534 1698 7 1659 39044 42 0 3 chr6 140811832 140818299 -8698738 - L1Md_T LINE L1 0 6585 41 7 1659 4246 85 5 2 chr6 140818294 140819314 -8697723 - MusHAL1 LINE L1 -2160 1193 172 7 1659 475 335 59 71 chr6 140819585 140819925 -8697112 - ORR1E LTR MaLR -13 346 11 7 1659 343 287 107 77 chr6 140819950 140820184 -8696853 + MLT1D LTR MaLR 161 417 -88 7 1659 431 276 70 58 chr6 140820763 140821005 -8696032 + RLTR42-int LTR ERVK 1156 1400 -4122 7 1659 926 222 57 0 chr6 140821017 140821229 -8695808 - URR1B DNA MER1_type -1 224 1 7 1659 486 0 0 0 chr6 140821735 140821789 -8695248 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 1659 568 316 14 93 chr6 140821789 140821830 -8695207 - B4A SINE B4 -25 267 229 7 1659 3332 58 0 0 chr6 140821830 140822226 -8694811 - MTA_Mm LTR MaLR 0 396 1 7 1659 568 316 14 93 chr6 140822226 140822474 -8694563 - B4A SINE B4 -64 228 1 7 1659 390 216 59 40 chr6 140823225 140823326 -8693711 - PB1D7 SINE Alu -7 113 11 7 1659 295 314 107 8 chr6 140823482 140823604 -8693433 + MER58C DNA MER1_type 56 189 -26 7 1659 299 271 76 44 chr6 140823626 140823784 -8693253 - L1M5 LINE L1 -362 5811 5649 7 1659 753 43 0 0 chr6 140824179 140824272 -8692765 + (TTTC)n Simple_repeat Simple_repeat 1 93 0 7 1659 338 299 0 22 chr6 140824281 140824370 -8692667 - PB1D10 SINE Alu -26 91 5 7 1659 231 352 22 0 chr6 140824383 140824474 -8692563 - PB1D10 SINE Alu -21 96 4 7 1659 207 0 0 0 chr6 140824700 140824723 -8692314 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1659 1030 256 50 98 chr6 140824826 140825224 -8691813 - MTE2b LTR MaLR 0 379 1 7 1659 36507 64 1 13 chr6 140825322 140831432 -8685605 - L1Md_F2 LINE L1 0 6585 563 7 1659 255 358 58 8 chr6 140832672 140832793 -8684244 + RSINE1 SINE B4 10 136 -29 7 1659 504 95 0 0 chr6 140832819 140832903 -8684134 + (TATG)n Simple_repeat Simple_repeat 1 84 0 7 1659 1233 90 0 0 chr6 140832903 140833080 -8683957 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 7 1659 483 18 0 0 chr6 140833944 140834000 -8683037 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 1659 805 68 17 0 chr6 140834002 140834119 -8682918 + (GA)n Simple_repeat Simple_repeat 2 120 0 7 1659 996 225 73 22 chr6 140835298 140835659 -8681378 - MTD LTR MaLR -14 405 3 7 1659 21 0 0 0 chr6 140835859 140835880 -8681157 + AT_rich Low_complexity Low_complexity 1 21 0 7 1659 224 297 120 11 chr6 140835906 140835998 -8681039 - PB1D10 SINE Alu -1 116 15 7 1659 413 267 8 57 chr6 140836104 140836227 -8680810 - B1_Mur2 SINE Alu -32 117 1 7 1659 249 333 23 35 chr6 140836165 140836252 -8680785 - ID_B1 SINE B4 -82 142 57 7 1659 219 133 0 0 chr6 140836263 140836308 -8680729 + (T)n Simple_repeat Simple_repeat 1 45 0 7 1659 1179 62 7 0 chr6 140836308 140836454 -8680583 - B1_Mus2 SINE Alu 0 147 1 7 1659 237 192 0 19 chr6 140836524 140836577 -8680460 + (TTAA)n Simple_repeat Simple_repeat 1 52 0 7 1659 567 275 47 0 chr6 140837963 140838112 -8678925 - RSINE1 SINE B4 -8 157 2 7 1659 288 304 30 64 chr6 140838122 140838357 -8678680 - L1MC LINE L1 -1774 4372 4146 7 1659 532 260 166 66 chr6 140839743 140840002 -8677035 + B4A SINE B4 2 286 -6 7 1659 503 31 15 0 chr6 140840009 140840074 -8676963 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1659 625 233 137 41 chr6 140840154 140840351 -8676686 + B3 SINE B2 1 216 0 7 1659 1014 106 35 0 chr6 140840365 140840506 -8676531 - B1_Mus2 SINE Alu -1 146 1 7 1659 1332 85 11 0 chr6 140840523 140840699 -8676338 - B2_Mm1t SINE B2 -14 179 2 7 1659 601 260 86 11 chr6 140841559 140841619 -8675418 - B4A SINE B4 -15 277 214 7 1659 653 92 10 0 chr6 140841619 140841717 -8675320 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 7 1659 601 254 58 7 chr6 140841717 140841855 -8675182 - B4A SINE B4 -79 213 19 7 1659 1586 106 4 0 chr6 140842378 140842613 -8674424 - Lx2 LINE L1 -1 6996 6761 7 1659 210 37 0 0 chr6 140843669 140843696 -8673341 + (TTTAA)n Simple_repeat Simple_repeat 4 30 0 7 1659 254 318 45 45 chr6 140843820 140843932 -8673105 - PB1D9 SINE Alu -2 118 7 7 1659 772 271 31 35 chr6 140844019 140844309 -8672728 - B4 SINE B4 -2 290 2 7 1659 1663 115 4 23 chr6 140844727 140844986 -8672051 - Lx2B LINE L1 -1011 5989 5736 7 1659 1317 145 89 8 chr6 140844986 140845222 -8671815 + Lx2B LINE L1 6741 6995 -5 7 1659 1072 179 0 131 chr6 140845272 140845516 -8671521 - B3 SINE B2 -4 212 1 7 1659 187 289 25 50 chr6 140845992 140846072 -8670965 - MIRm SINE MIR -91 185 108 8 1659 1468 283 73 35 chr6 140846567 140847120 -8669917 - Lx6 LINE L1 -30 7430 6479 8 1659 913 263 0 0 chr6 140847118 140847308 -8669729 - Lx6 LINE L1 -688 6362 6173 8 1659 186 189 0 0 chr6 140847582 140847619 -8669418 + CT-rich Low_complexity Low_complexity 4 40 0 8 1659 328 194 32 0 chr6 140847638 140847700 -8669337 - RLTR31_Mur LTR ERVK 0 553 490 8 1659 705 327 55 36 chr6 140847752 140848171 -8668866 - RLTR17 LTR ERVK -141 551 125 8 1659 643 281 28 6 chr6 140848203 140848382 -8668655 - B3A SINE B2 -9 189 7 8 1659 736 279 120 17 chr6 140849756 140849995 -8667042 + MTD LTR MaLR 6 269 -150 8 1659 3766 112 106 12 chr6 140849995 140850322 -8666715 + RMER17A LTR ERVK 1 316 -435 8 1659 1341 34 6 17 chr6 140850322 140850503 -8666534 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 8 1659 3766 101 106 12 chr6 140850503 140850873 -8666164 + RMER17A LTR ERVK 317 748 -3 8 1659 571 251 60 6 chr6 140850873 140851011 -8666026 + MTD LTR MaLR 272 418 -1 8 1659 180 322 61 27 chr6 140851092 140851239 -8665798 + L3 LINE CR1 4119 4270 -219 8 1659 2198 194 5 187 chr6 140851521 140851766 -8665271 + RLTR18B LTR ERVK 1 225 -287 8 1659 1673 36 0 5 chr6 140851766 140851962 -8665075 - B2_Mm2 SINE B2 0 195 1 8 1659 2198 194 5 187 chr6 140851962 140852337 -8664700 + RLTR18B LTR ERVK 226 508 -4 8 1659 286 232 43 0 chr6 140852752 140852821 -8664216 - ID4_ SINE ID -11 72 1 8 1659 2366 116 0 0 chr6 140852961 140853288 -8663749 - ORR1A2 LTR MaLR 0 327 1 8 1659 253 321 12 0 chr6 140853295 140853379 -8663658 + Charlie2a DNA MER1_type 16 100 -2761 8 1659 253 309 88 0 chr6 140853596 140853732 -8663305 + Charlie2a DNA MER1_type 1913 2060 -801 8 1659 350 195 11 0 chr6 140855445 140855532 -8661505 + CT-rich Low_complexity Low_complexity 1 88 0 8 1659 432 0 0 0 chr6 140855604 140855652 -8661385 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1659 432 0 0 0 chr6 140855652 140855699 -8661338 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1659 25 75 0 0 chr6 140855920 140855973 -8661064 + AT_rich Low_complexity Low_complexity 1 53 0 8 1659 22 0 0 0 chr6 140856009 140856031 -8661006 + AT_rich Low_complexity Low_complexity 1 22 0 8 1659 507 269 52 0 chr6 140856636 140856770 -8660267 + RSINE1 SINE B4 3 143 -22 8 1659 715 271 31 2 chr6 140856851 140857045 -8659992 + B3A SINE B2 19 216 0 8 1659 240 278 31 72 chr6 140857939 140858036 -8659001 - B3A SINE B2 -14 184 92 8 1659 1416 240 102 27 chr6 140858413 140858530 -8658507 - Lx8 LINE L1 -1 7472 7349 8 1659 372 77 0 0 chr6 140858530 140858582 -8658455 + (TTAA)n Simple_repeat Simple_repeat 1 52 0 8 1659 1416 240 102 27 chr6 140858582 140858837 -8658200 - Lx8 LINE L1 -125 7348 7072 8 1659 225 233 67 0 chr6 140860115 140860175 -8656862 - MTEa LTR MaLR 0 379 316 8 1659 192 77 0 0 chr6 140860179 140860205 -8656832 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 8 1659 783 269 46 75 chr6 140860205 140860220 -8656817 - MTEa LTR MaLR -55 324 312 8 1659 1203 74 0 20 chr6 140860220 140860524 -8656513 + (GGGA)n Simple_repeat Simple_repeat 1 297 0 8 1659 783 269 46 75 chr6 140860524 140860788 -8656249 - MTEa LTR MaLR -68 311 53 8 1659 395 231 11 0 chr6 140860842 140860933 -8656104 + B3 SINE B2 123 214 -2 8 1659 578 292 7 0 chr6 140862432 140862579 -8654458 - RSINE1 SINE B4 -4 161 14 8 1659 453 330 82 46 chr6 140862720 140863025 -8654012 - MLT1B LTR MaLR -74 316 1 8 1659 591 53 0 0 chr6 140864167 140864242 -8652795 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 1659 503 261 35 47 chr6 140864340 140864509 -8652528 - B3 SINE B2 0 216 50 8 1659 22 26 0 25 chr6 140865284 140865303 -8651734 + AT_rich Low_complexity Low_complexity 1 19 0 8 1659 932 245 18 28 chr6 140865303 140865521 -8651516 - B3 SINE B2 0 216 1 8 1659 22 26 0 25 chr6 140865521 140865541 -8651496 + AT_rich Low_complexity Low_complexity 1 20 0 8 1659 332 176 14 56 chr6 140865619 140865691 -8651346 + ID2 SINE ID 2 70 -13 8 1659 270 307 29 19 chr6 140865864 140865967 -8651070 + MER58A DNA MER1_type 16 119 -105 8 1659 504 86 0 0 chr6 140866077 140866147 -8650890 + (TA)n Simple_repeat Simple_repeat 1 70 0 8 1659 522 279 100 50 chr6 140866166 140866366 -8650671 - B3 SINE B2 0 216 7 8 1659 327 250 159 0 chr6 140866721 140866853 -8650184 - L1M5 LINE L1 -2732 3414 3262 8 1659 1370 55 0 6 chr6 140866931 140867112 -8649925 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 8 1659 567 0 0 0 chr6 140867112 140867175 -8649862 + (TTCTC)n Simple_repeat Simple_repeat 5 67 0 8 1659 1368 67 0 0 chr6 140867175 140867355 -8649682 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 8 1659 723 81 0 0 chr6 140867355 140867454 -8649583 + (TCCCC)n Simple_repeat Simple_repeat 2 100 0 8 1659 1030 220 24 0 chr6 140867618 140867827 -8649210 - B3 SINE B2 0 216 3 8 1659 372 182 179 57 chr6 140867834 140867974 -8649063 - B3A SINE B2 0 198 42 8 1659 822 161 140 36 chr6 140868121 140868314 -8648723 - ORR1C2 LTR MaLR 0 384 172 8 1659 608 155 7 0 chr6 140868317 140868459 -8648578 + GA-rich Low_complexity Low_complexity 2 144 0 8 1659 781 200 28 6 chr6 140868489 140868665 -8648372 - ORR1C2 LTR MaLR -193 181 2 8 1659 279 325 5 13 chr6 140868732 140868844 -8648193 + MIR SINE MIR 105 216 -52 8 1659 180 152 0 0 chr6 140868877 140868910 -8648127 + (CAT)n Simple_repeat Simple_repeat 1 33 0 8 1659 272 254 7 22 chr6 140869116 140869253 -8647784 + (TG)n Simple_repeat Simple_repeat 2 136 0 8 1659 897 185 0 0 chr6 140869286 140869464 -8647573 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1659 439 304 37 31 chr6 140869472 140869635 -8647402 - RSINE1 SINE B4 0 165 2 8 1659 892 241 96 51 chr6 140870388 140870763 -8646274 - L1MA8 LINE L1 -26 6265 5874 8 1659 288 0 0 0 chr6 140870935 140870967 -8646070 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1659 492 214 10 0 chr6 140870987 140871090 -8645947 - B3 SINE B2 -75 141 38 8 1659 200 35 35 0 chr6 140871916 140871945 -8645092 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1659 612 40 0 0 chr6 140871962 140872037 -8645000 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 8 1659 477 0 0 0 chr6 140872049 140872102 -8644935 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1659 361 257 198 0 chr6 140872104 140872205 -8644832 - ID_B1 SINE B4 -22 202 82 8 1659 245 338 35 49 chr6 140872650 140872793 -8644244 - MIR SINE MIR -113 149 9 8 1659 313 290 143 12 chr6 140874293 140874544 -8642493 - RMER15 LTR ERVL -15 560 277 8 1659 235 260 0 0 chr6 140874787 140874837 -8642200 - B4A SINE B4 -1 291 242 8 1659 555 16 0 0 chr6 140874873 140874937 -8642100 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 1659 385 280 40 0 chr6 140874967 140875067 -8641970 - RSINE1 SINE B4 -51 114 11 8 1659 535 263 140 16 chr6 140875065 140875258 -8641779 - B4A SINE B4 -60 232 16 8 1659 23 0 0 0 chr6 140875606 140875629 -8641408 + AT_rich Low_complexity Low_complexity 1 23 0 8 1659 310 279 76 34 chr6 140875878 140876049 -8640988 - L1ME1 LINE L1 -127 6037 5862 8 1659 267 344 49 31 chr6 140876239 140876401 -8640636 - L1M5 LINE L1 -3312 2834 2670 8 1659 774 147 0 0 chr6 140877068 140877146 -8639891 + (TTC)n Simple_repeat Simple_repeat 1 78 0 8 1659 1497 28 0 0 chr6 140877146 140877324 -8639713 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 8 1659 774 147 0 0 chr6 140877324 140877381 -8639656 + (TTC)n Simple_repeat Simple_repeat 1 57 0 8 1659 382 308 0 9 chr6 140877381 140877486 -8639551 - PB1D10 SINE Alu -5 112 9 8 1659 3619 31 28 5 chr6 140878372 140878798 -8638239 + RLTR10C LTR ERVK 1 436 0 8 1659 732 316 61 0 chr6 140879546 140879774 -8637263 + Tigger5 DNA MER2_type 1 242 -2164 8 1659 270 339 35 9 chr6 140879770 140879883 -8637154 + Tigger5 DNA MER2_type 2291 2406 0 8 1659 546 270 82 169 chr6 140879902 140880067 -8636970 + L1MA6 LINE L1 4752 4927 -1213 8 1659 3498 71 0 0 chr6 140880067 140880515 -8636522 + L1Md_T LINE L1 6135 6582 0 8 1659 1254 282 103 91 chr6 140880515 140881654 -8635383 + L1MA6 LINE L1 4928 6067 -233 8 1659 446 323 43 62 chr6 140881806 140882304 -8634733 + RLTR12B LTR ERVK 8 356 -212 8 1659 288 0 0 0 chr6 140882388 140882420 -8634617 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1659 846 120 0 29 chr6 140882437 140882574 -8634463 - B1_Mur4 SINE Alu -6 144 12 8 1659 473 214 111 0 chr6 140882574 140882691 -8634346 + ID_B1 SINE B4 94 223 -1 8 1659 1726 141 41 32 chr6 140883314 140883629 -8633408 - MTC LTR MaLR 0 421 104 8 1659 753 158 14 7 chr6 140883648 140883795 -8633242 - Lx LINE L1 -12 6642 6495 8 1659 2556 149 26 46 chr6 140883795 140884720 -8632317 - L1_Mur1 LINE L1 -2218 1694 796 8 1659 591 15 0 0 chr6 140885115 140885183 -8631854 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 8 1659 1578 47 13 0 chr6 140885183 140885481 -8631556 + (TTTC)n Simple_repeat Simple_repeat 1 301 0 8 1659 2018 63 0 0 chr6 140885501 140885754 -8631283 - L1_Mus1 LINE L1 -1 6566 6314 8 1659 258 81 0 0 chr6 140885754 140885791 -8631246 + L1_Mus1 LINE L1 6250 6286 -281 8 1659 762 322 81 22 chr6 140886195 140886554 -8630483 + Lx8 LINE L1 6817 7196 -277 8 1659 396 0 0 0 chr6 140886569 140886613 -8630424 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1659 9911 129 71 5 chr6 140886623 140889372 -8627665 + L1VL2 LINE L1 365 3284 -2599 8 1659 387 0 0 0 chr6 140890104 140890147 -8626890 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1659 693 257 171 20 chr6 140891455 140891701 -8625336 - B4A SINE B4 -7 285 3 8 1659 283 315 40 46 chr6 140892200 140892373 -8624664 - L2a LINE L2 -10 3416 3245 8 1659 1145 96 195 11 chr6 140892662 140892852 -8624185 + URR1B DNA MER1_type 1 225 0 8 1659 887 290 56 53 chr6 140892964 140893306 -8623731 + ORR1E LTR MaLR 13 355 -4 8 1659 962 258 61 94 chr6 140893413 140893871 -8623166 - Lx9 LINE L1 -15 7629 7187 8 1659 629 244 58 40 chr6 140894002 140894228 -8622809 - FordPrefect DNA Tip100 -61 1622 1393 8 1659 463 350 37 14 chr6 140894373 140894590 -8622447 - FordPrefect DNA Tip100 -544 1139 918 8 1659 446 304 96 48 chr6 140894616 140894886 -8622151 + RMER15 LTR ERVL 279 561 -14 8 1659 247 345 0 83 chr6 140895308 140895428 -8621609 + L2c LINE L2 3248 3357 -30 8 1659 387 284 9 52 chr6 140895683 140895764 -8621273 + PB1D10 SINE Alu 2 83 -34 8 1659 1458 235 72 0 chr6 140895764 140896109 -8620928 - ORR1D2 LTR MaLR 0 370 1 8 1659 387 284 9 52 chr6 140896109 140896142 -8620895 + PB1D10 SINE Alu 84 111 -6 8 1659 595 234 29 0 chr6 140896744 140896881 -8620156 + B1F SINE Alu 1 141 -8 9 1659 405 0 0 0 chr6 140896952 140896997 -8620040 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 9 1659 333 0 0 0 chr6 140897164 140897201 -8619836 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1659 868 295 93 25 chr6 140897594 140897890 -8619147 + L1MA5 LINE L1 5398 5747 -553 9 1659 3322 49 2 12 chr6 140897890 140898301 -8618736 - MTB_Mm LTR MaLR 0 407 1 9 1659 868 293 100 30 chr6 140898301 140898561 -8618476 + L1MA5 LINE L1 5748 6016 -284 9 1659 473 47 16 0 chr6 140899408 140899472 -8617565 + (TC)n Simple_repeat Simple_repeat 2 66 0 9 1659 498 149 0 0 chr6 140899471 140899558 -8617479 + (TA)n Simple_repeat Simple_repeat 2 88 0 9 1659 1436 303 102 52 chr6 140899747 140900498 -8616539 - Lx8 LINE L1 -182 7291 6503 9 207 603 268 103 130 chr6 140902321 140902699 -8614338 - MTEa LTR MaLR -11 368 1 9 1660 213 213 21 0 chr6 140902699 140902746 -8614291 + ID2 SINE ID 36 83 0 9 1660 32 0 0 0 chr6 140903356 140903388 -8613649 + AT_rich Low_complexity Low_complexity 1 32 0 9 1660 1365 185 157 9 chr6 140903457 140903910 -8613127 - RLTR11A2 LTR ERVK 0 527 8 9 1660 1031 118 0 12 chr6 140903965 140904137 -8612900 + (TCCCC)n Simple_repeat Simple_repeat 3 172 0 9 1660 282 160 0 0 chr6 140904137 140904187 -8612850 - ID_B1 SINE B4 -1 223 174 9 1660 545 320 63 36 chr6 140905554 140905888 -8611149 - L1ME2 LINE L1 -215 5949 5607 9 1660 854 219 155 0 chr6 140906086 140906273 -8610764 - B3 SINE B2 0 216 1 9 1660 495 0 0 0 chr6 140906430 140906485 -8610552 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1660 553 229 133 72 chr6 140906531 140906795 -8610242 - B4 SINE B4 -10 282 3 9 1660 262 291 25 0 chr6 140906899 140906978 -8610059 - ID4 SINE ID 0 83 3 9 1660 540 0 0 0 chr6 140907094 140907154 -8609883 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 1660 530 207 56 42 chr6 140907200 140907373 -8609664 + MTD LTR MaLR 78 283 -136 9 1660 454 206 0 49 chr6 140907393 140907495 -8609542 + MTD LTR MaLR 265 361 -58 9 1660 24 42 0 20 chr6 140907825 140907850 -8609187 + AT_rich Low_complexity Low_complexity 1 25 0 9 1660 487 310 38 13 chr6 140907850 140908007 -8609030 - RSINE1 SINE B4 -2 163 3 9 1660 24 42 0 20 chr6 140908007 140908030 -8609007 + AT_rich Low_complexity Low_complexity 1 23 0 9 1660 391 288 17 43 chr6 140908433 140908549 -8608488 - ID_B1 SINE B4 -2 222 110 9 1660 318 50 0 0 chr6 140908747 140908787 -8608250 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1660 327 137 0 0 chr6 140908787 140908860 -8608177 + (GA)n Simple_repeat Simple_repeat 2 74 0 9 1660 473 257 122 51 chr6 140908886 140909140 -8607897 - B4 SINE B4 -18 274 3 9 1660 798 248 200 25 chr6 140909624 140909939 -8607098 + ORR1D2 LTR MaLR 1 370 0 9 1660 617 157 0 9 chr6 140910122 140910238 -8606799 + (CATATA)n Simple_repeat Simple_repeat 5 119 0 9 1660 431 299 107 13 chr6 140912400 140912549 -8604488 - RSINE1 SINE B4 0 165 3 9 1660 3095 216 121 38 chr6 140912567 140912788 -8604249 - Lx7 LINE L1 -4 7692 7422 9 1660 630 0 0 0 chr6 140912788 140912858 -8604179 + (CA)n Simple_repeat Simple_repeat 1 70 0 9 1660 3095 216 121 38 chr6 140912858 140913213 -8603824 - Lx7 LINE L1 -275 7421 7072 9 1660 582 60 0 0 chr6 140913213 140913296 -8603741 + (TG)n Simple_repeat Simple_repeat 1 83 0 9 1660 387 0 0 0 chr6 140913296 140913338 -8603699 + (GA)n Simple_repeat Simple_repeat 1 43 0 9 1660 3095 216 121 38 chr6 140913338 140913626 -8603411 - Lx7 LINE L1 -625 7071 6755 9 1660 744 12 0 0 chr6 140913750 140913835 -8603202 + (TC)n Simple_repeat Simple_repeat 2 86 0 9 1660 388 257 11 0 chr6 140914232 140914321 -8602716 - Lx3C LINE L1 -149 6827 6724 9 1660 588 50 0 0 chr6 140914466 140914546 -8602491 + (CAAAT)n Simple_repeat Simple_repeat 4 83 0 9 1660 875 227 186 5 chr6 140914754 140914975 -8602062 + Lx2B LINE L1 6739 6999 -1 9 1660 378 302 42 24 chr6 140914984 140915150 -8601887 + L1MA6 LINE L1 6122 6290 -10 9 1660 29 28 0 0 chr6 140915285 140915321 -8601716 + AT_rich Low_complexity Low_complexity 1 36 0 9 1660 513 337 11 11 chr6 140915558 140915741 -8601296 - B3A SINE B2 -6 192 10 9 1660 219 78 19 38 chr6 140917305 140917358 -8599679 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 9 1660 198 0 0 0 chr6 140917898 140917920 -8599117 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1660 240 312 92 51 chr6 140917985 140918181 -8598856 - L1MC4 LINE L1 -946 7096 6893 9 1660 218 279 0 0 chr6 140919184 140919227 -8597810 - PB1D10 SINE Alu -72 45 3 9 1660 900 256 120 17 chr6 140919760 140920117 -8596920 - MTD LTR MaLR -14 405 12 9 1660 261 331 184 18 chr6 140920187 140920350 -8596687 + Tigger5 DNA MER2_type 51 240 -2166 9 1660 390 264 4 37 chr6 140920574 140920799 -8596238 + HAL1-2a_MD LINE L1 2350 2505 -519 9 1660 704 204 6 3 chr6 140920799 140921129 -8595908 + (CAA)n Simple_repeat Simple_repeat 1 331 0 9 1660 209 250 0 0 chr6 140921130 140921174 -8595863 + (CAG)n Simple_repeat Simple_repeat 2 45 0 9 1660 356 298 0 21 chr6 140921180 140921324 -8595713 + HAL1-2a_MD LINE L1 2365 2505 -519 9 1660 406 248 21 7 chr6 140921325 140921467 -8595570 + HAL1-2a_MD LINE L1 2356 2499 -525 9 1660 342 183 0 0 chr6 140921473 140921544 -8595493 + (CAA)n Simple_repeat Simple_repeat 3 73 0 9 1660 357 230 34 13 chr6 140921563 140921671 -8595366 - PB1D9 SINE Alu -34 115 7 9 1660 376 226 32 0 chr6 140922198 140922291 -8594746 + MTEb LTR MaLR 265 360 -19 9 1660 26 0 0 0 chr6 140923579 140923605 -8593432 + AT_rich Low_complexity Low_complexity 1 26 0 9 1660 606 274 73 0 chr6 140923713 140923892 -8593145 + B3A SINE B2 1 192 -6 9 1660 414 0 0 0 chr6 140924077 140924123 -8592914 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1660 288 260 122 28 chr6 140924164 140924271 -8592766 - B4 SINE B4 -47 245 129 9 1660 505 217 99 8 chr6 140924822 140924943 -8592094 - ID_B1 SINE B4 0 224 93 9 1660 816 219 12 6 chr6 140926236 140926397 -8590640 - RSINE1 SINE B4 0 165 4 9 1660 780 200 0 27 chr6 140926533 140926682 -8590355 + B1_Mur2 SINE Alu 5 149 0 9 1660 22 56 0 0 chr6 140926722 140926758 -8590279 + AT_rich Low_complexity Low_complexity 1 36 0 9 1660 21 0 0 0 chr6 140927312 140927333 -8589704 + AT_rich Low_complexity Low_complexity 1 21 0 9 1660 215 186 23 0 chr6 140927342 140927385 -8589652 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 1660 983 234 32 84 chr6 140927386 140927694 -8589343 - B4A SINE B4 0 292 1 9 1660 448 285 39 0 chr6 140928940 140929070 -8587967 - ID_B1 SINE B4 0 224 90 9 1660 291 234 97 105 chr6 140929075 140929199 -8587838 + MLT1A1 LTR MaLR 284 406 -2 9 1660 180 0 0 0 chr6 140929208 140929228 -8587809 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1660 531 66 0 0 chr6 140929949 140930025 -8587012 + (CA)n Simple_repeat Simple_repeat 1 76 0 9 1660 403 191 23 23 chr6 140930032 140930209 -8586828 + (CAGA)n Simple_repeat Simple_repeat 2 178 0 9 1660 282 264 0 0 chr6 140930178 140930333 -8586704 + (CA)n Simple_repeat Simple_repeat 2 156 0 9 1660 651 197 0 0 chr6 140930352 140930530 -8586507 + (CA)n Simple_repeat Simple_repeat 2 179 0 9 1660 251 277 81 46 chr6 140930597 140930771 -8586266 - Charlie1a DNA MER1_type -61 1394 1215 9 1660 774 260 40 0 chr6 140931221 140931421 -8585616 - B3 SINE B2 -7 209 2 9 1660 666 266 117 19 chr6 140932256 140932513 -8584524 + ORR1E LTR MaLR 2 283 -76 9 1660 278 270 0 0 chr6 140932567 140932641 -8584396 + ORR1E LTR MaLR 299 372 -7 9 1660 392 300 53 8 chr6 140933287 140933418 -8583619 - ID_B1 SINE B4 -6 218 82 9 1660 2179 138 35 62 chr6 140933826 140934306 -8582731 - IAPLTR2_Mm LTR ERVK -8 467 1 9 1660 4880 35 3 10 chr6 140934306 140934890 -8582147 - IAPEz-int LTR ERVK 0 6481 5902 9 1660 42803 8 13 0 chr6 140934864 140939521 -8577516 - IAPEz-int LTR ERVK -1763 4718 1 9 1660 2179 138 35 62 chr6 140939522 140940002 -8577035 - IAPLTR2_Mm LTR ERVK -8 467 1 9 1660 738 262 37 61 chr6 140940264 140940561 -8576476 + B4A SINE B4 3 292 0 9 1660 4690 154 72 25 chr6 140940764 140941629 -8575408 + Lx5 LINE L1 6146 7050 0 9 1660 339 277 111 63 chr6 140943039 140943228 -8573809 - B3A SINE B2 0 198 1 9 1660 464 276 183 7 chr6 140943705 140943858 -8573179 + B3A SINE B2 1 180 -18 9 1660 21 71 0 0 chr6 140945010 140945052 -8571985 + AT_rich Low_complexity Low_complexity 1 42 0 9 1660 499 284 31 43 chr6 140945203 140945365 -8571672 - B3A SINE B2 -1 197 38 9 1660 371 181 8 25 chr6 140945579 140945698 -8571339 + (TG)n Simple_repeat Simple_repeat 1 117 0 9 1660 865 219 22 117 chr6 140945698 140945972 -8571065 - B4A SINE B4 0 292 45 9 1660 789 227 68 19 chr6 140946139 140946434 -8570603 + ORR1D2 LTR MaLR 5 367 -3 9 1660 386 38 0 19 chr6 140947100 140947153 -8569884 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1660 537 64 0 0 chr6 140947335 140947413 -8569624 + (GA)n Simple_repeat Simple_repeat 1 78 0 9 1660 531 0 0 0 chr6 140947700 140947759 -8569278 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1660 314 74 19 0 chr6 140948062 140948116 -8568921 + (TTTTTG)n Simple_repeat Simple_repeat 6 60 0 9 1660 194 299 204 22 chr6 140948559 140948696 -8568341 + MIRb SINE MIR 60 221 -47 9 1660 778 102 0 17 chr6 140949679 140949798 -8567239 + MusHAL1 LINE L1 263 379 -2333 9 1660 848 257 42 28 chr6 140950819 140951031 -8566006 - B3 SINE B2 0 216 2 9 1660 404 106 47 0 chr6 140951476 140951561 -8565476 + (TA)n Simple_repeat Simple_repeat 2 90 0 9 1660 289 305 15 52 chr6 140951772 140951907 -8565130 - L1MB3 LINE L1 -20 6163 6034 9 1660 295 195 6 31 chr6 140951931 140951995 -8565042 + PB1D10 SINE Alu 43 103 -17 9 1660 36 23 0 0 chr6 140952236 140952279 -8564758 + AT_rich Low_complexity Low_complexity 1 43 0 9 1660 593 278 44 44 chr6 140952288 140952491 -8564546 - B3 SINE B2 -13 203 1 9 1660 238 265 110 88 chr6 140952491 140952582 -8564455 - RSINE1 SINE B4 -70 95 3 9 1660 868 131 11 0 chr6 140952639 140952814 -8564223 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 9 1660 306 50 0 0 chr6 140953331 140953371 -8563666 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1660 254 281 116 0 chr6 140954155 140954276 -8562761 + Charlie2b DNA MER1_type 1925 2059 -723 1 1660 2627 282 123 15 chr6 140954280 140955331 -8561706 - Lx8 LINE L1 -11 7462 6299 1 1660 750 323 27 31 chr6 140958727 140959021 -8558016 + RMER15 LTR ERVL 267 559 -16 1 1660 418 296 0 31 chr6 140959594 140959723 -8557314 + MER91B DNA Tip100 12 136 -54 1 1660 576 266 7 21 chr6 140960098 140960240 -8556797 - ID_B1 SINE B4 -1 223 84 1 1660 1795 208 77 18 chr6 140960404 140960610 -8556427 - MTD LTR MaLR 0 419 208 1 1660 1730 160 60 117 chr6 140960610 140961028 -8556009 + ORR1B1 LTR MaLR 1 394 0 1 1660 1795 208 77 18 chr6 140961028 140961212 -8555825 - MTD LTR MaLR -212 207 6 1 1660 207 100 0 0 chr6 140961369 140961399 -8555638 + (CCA)n Simple_repeat Simple_repeat 2 31 0 1 1660 1134 58 14 7 chr6 140962645 140962783 -8554254 + B1_Mm SINE Alu 1 139 -8 1 1660 276 0 68 0 chr6 140962783 140962827 -8554210 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 1660 230 253 46 92 chr6 140963073 140963160 -8553877 - LTRIS2 LTR ERV1 -69 495 413 1 1660 26 30 0 0 chr6 140963183 140963216 -8553821 + AT_rich Low_complexity Low_complexity 1 33 0 1 1660 621 285 12 12 chr6 140963342 140963509 -8553528 - B4A SINE B4 -10 282 116 1 1660 622 343 44 5 chr6 140964180 140964385 -8552652 - B4A SINE B4 -77 215 3 1 1660 21 71 0 0 chr6 140964448 140964490 -8552547 + AT_rich Low_complexity Low_complexity 1 42 0 1 1660 423 0 0 0 chr6 140965195 140965242 -8551795 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 1 1660 860 264 47 0 chr6 140965243 140965436 -8551601 - B3 SINE B2 -14 202 1 1 1660 381 224 12 12 chr6 140965437 140965523 -8551514 + MLT1C LTR MaLR 34 119 -348 1 1660 461 257 34 48 chr6 140965745 140965892 -8551145 - B1F2 SINE Alu -1 148 4 1 1660 266 320 81 20 chr6 140966775 140966874 -8550163 - PB1D10 SINE Alu -12 105 1 1 1660 594 286 22 22 chr6 140967445 140967624 -8549413 + B4 SINE B4 114 292 0 1 1660 720 280 185 23 chr6 140968405 140968751 -8548286 - Lx8 LINE L1 -145 7328 6927 1 1660 366 324 14 29 chr6 140968939 140969079 -8547958 + ID_B1 SINE B4 86 223 -1 1 1660 326 268 0 14 chr6 140969086 140969158 -8547879 + ID4_ SINE ID 2 72 -11 1 1660 275 303 30 20 chr6 140969367 140969468 -8547569 - BC1_Mm scRNA scRNA -23 129 28 1 1660 636 303 64 20 chr6 140969618 140969820 -8547217 - ID_B1 SINE B4 -9 215 5 1 1660 204 342 40 14 chr6 140970123 140970197 -8546840 + MIRb SINE MIR 19 94 -174 1 1660 331 280 99 36 chr6 140970240 140970351 -8546686 + ID_B1 SINE B4 2 119 -105 1 1660 473 276 78 7 chr6 140970921 140971063 -8545974 + Tigger5 DNA MER2_type 33 184 -2222 1 1660 281 339 47 39 chr6 140971195 140971324 -8545713 - ORR1E LTR MaLR -166 193 64 1 1660 1686 162 190 6 chr6 140971429 140971745 -8545292 + ORR1D1 LTR MaLR 1 374 0 1 1660 268 387 76 36 chr6 140972909 140973134 -8543903 - LTR33 LTR ERVL -271 244 11 1 1660 194 222 0 18 chr6 140973631 140973686 -8543351 + C-rich Low_complexity Low_complexity 6 59 0 1 1660 306 0 0 0 chr6 140973686 140973720 -8543317 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1660 414 277 24 32 chr6 140973858 140973981 -8543056 - B4 SINE B4 -170 122 1 1 1660 372 43 0 0 chr6 140976454 140976500 -8540537 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1 1660 5651 75 4 0 chr6 140976512 140977243 -8539794 - L1_Mus4 LINE L1 -89 6547 5814 1 1660 226 278 48 143 chr6 140978268 140978394 -8538643 - RMER15 LTR ERVL -187 388 275 1 1660 1285 271 92 3 chr6 140980070 140980407 -8536630 - MTD LTR MaLR 0 419 53 1 1660 417 281 35 43 chr6 140980529 140980670 -8536367 + ID_B1 SINE B4 85 224 0 1 1660 1542 299 121 27 chr6 140980728 140981583 -8535454 - Charlie1a DNA MER1_type -269 1186 252 1 1660 293 349 39 33 chr6 140981619 140981800 -8535237 - Charlie1a DNA MER1_type -1265 190 9 1 1660 1418 146 32 0 chr6 140981801 140982020 -8535017 - URR1A DNA MER1_type 0 226 1 1 1660 378 245 103 31 chr6 140982091 140982188 -8534849 + RSINE1 SINE B4 5 108 -57 1 1660 236 224 86 0 chr6 140983068 140983147 -8533890 - L1M2 LINE L1 -923 5217 5127 1 1660 1222 163 114 0 chr6 140984127 140984329 -8532708 - URR1B DNA MER1_type 0 225 1 1 1660 5249 62 2 3 chr6 140984333 140984960 -8532077 + L1_Mus1 LINE L1 5941 6566 -1 1 1660 597 268 69 98 chr6 140985318 140985500 -8531537 - ID_B1 SINE B4 -22 202 27 1 1660 1937 90 87 0 chr6 140985500 140985800 -8531237 - IAPEY2_LTR LTR ERVK 0 357 32 1 1660 1015 252 64 43 chr6 140986823 140987105 -8529932 - B4A SINE B4 0 292 5 1 1660 231 327 93 68 chr6 140987301 140987462 -8529575 + MIRb SINE MIR 24 188 -80 1 1660 10964 44 9 2 chr6 140987723 140989753 -8527284 - L1Md_F3 LINE L1 -10 6574 4528 1 1660 459 0 0 0 chr6 140989789 140989840 -8527197 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1660 405 220 130 52 chr6 140989840 140989955 -8527082 - RSINE1 SINE B4 -40 125 2 1 1660 670 310 12 25 chr6 140991041 140991203 -8525834 + RSINE1 SINE B4 6 165 0 1 1660 513 266 35 35 chr6 140991244 140991388 -8525649 + B1F SINE Alu 3 146 -3 1 1660 234 91 0 0 chr6 140991533 140991566 -8525471 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1 1660 1021 281 105 33 chr6 140991633 140992175 -8524862 - L1MA6 LINE L1 -4 6296 5716 1 1660 344 353 7 32 chr6 140993763 140993918 -8523119 - MLT1A0 LTR MaLR -2 406 256 1 1660 670 280 41 6 chr6 140994320 140994489 -8522548 + B3A SINE B2 7 181 -17 1 1660 396 0 0 0 chr6 140994506 140994550 -8522487 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1660 594 0 0 0 chr6 140994550 140994616 -8522421 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1660 415 193 43 2 chr6 140995001 140995106 -8521931 - MLT1A0 LTR MaLR -291 117 7 1 1660 438 341 73 62 chr6 140995099 140995387 -8521650 - MER21B LTR ERV1 -185 678 388 1 1660 317 268 183 72 chr6 140995226 140995488 -8521549 - MER77 LTR ERVL -16 591 301 1 1660 279 374 38 49 chr6 140995520 140995703 -8521334 - MER21B LTR ERV1 -665 198 18 1 1660 516 106 0 0 chr6 140995708 140995793 -8521244 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1660 3987 35 5 0 chr6 140995805 140996239 -8520798 + RLTR10C LTR ERVK 1 436 0 1 1660 428 238 29 19 chr6 140996778 140996881 -8520156 + PB1D10 SINE Alu 1 104 -13 1 1660 207 0 0 0 chr6 140996881 140996904 -8520133 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 1 1660 497 273 54 63 chr6 140996995 140997218 -8519819 - L1MA4A LINE L1 -396 5907 5687 1 1660 24 0 0 0 chr6 140997422 140997446 -8519591 + AT_rich Low_complexity Low_complexity 1 24 0 1 1660 21 36 0 0 chr6 140998187 140998215 -8518822 + AT_rich Low_complexity Low_complexity 1 28 0 1 1660 685 237 183 7 chr6 140998239 140998392 -8518645 + B3A SINE B2 1 180 -18 1 1660 34 0 0 0 chr6 140998404 140998438 -8518599 + AT_rich Low_complexity Low_complexity 1 34 0 1 1660 807 62 9 0 chr6 140999888 141000000 -8517037 + RMER10B LTR ERVL 54 166 -232 1 1660 213 213 0 0 chr6 141000036 141000083 -8516954 + CT-rich Low_complexity Low_complexity 2 48 0 1 1660 674 283 67 37 chr6 141000140 141000408 -8516629 + B4A SINE B4 14 289 -3 2 1660 1265 130 115 0 chr6 141000448 141000648 -8516389 + URR1A DNA MER1_type 1 223 -3 3 1660 200 208 0 0 chr6 141000767 141000815 -8516222 + A-rich Low_complexity Low_complexity 1 48 0 4 1660 748 302 86 4 chr6 141001457 141001713 -8515324 + Tigger7 DNA MER2_type 70 346 -2145 5 1660 310 284 0 64 chr6 141001783 141001892 -8515145 + Tigger7 DNA MER2_type 2389 2490 -1 5 1660 275 150 17 0 chr6 141004656 141004716 -8512321 + GA-rich Low_complexity Low_complexity 3 63 0 6 1660 1156 206 49 18 chr6 141005349 141005635 -8511402 + ORR1D1 LTR MaLR 72 366 -8 7 1660 711 354 50 21 chr6 141005938 141006319 -8510718 - Lx8 LINE L1 -184 7289 6898 8 1660 1123 28 0 0 chr6 141006320 141006461 -8510576 + RLTR1D LTR ERV1 1 141 -362 9 1660 1773 45 18 0 chr6 141006461 141006595 -8510442 + L1Md_F3 LINE L1 6335 6468 -116 1 1660 270 0 0 0 chr6 141006595 141006625 -8510412 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1 1660 1773 45 18 0 chr6 141006625 141006710 -8510327 + L1Md_F3 LINE L1 6469 6556 -28 1 1660 243 0 0 0 chr6 141006710 141006737 -8510300 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 1660 1535 174 19 28 chr6 141006739 141007148 -8509889 + RLTR1D LTR ERV1 134 605 0 9 1660 373 269 152 49 chr6 141007148 141007312 -8509725 - Lx8 LINE L1 -573 6900 6720 8 1660 451 275 15 15 chr6 141008456 141008589 -8508448 + RSINE1 SINE B4 3 135 -30 1 1660 387 89 0 0 chr6 141008604 141008660 -8508377 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1660 315 231 13 0 chr6 141008818 141008896 -8508141 - MER53 DNA hAT -8 185 107 1 1660 303 264 22 0 chr6 141008819 141008910 -8508127 + MER53 DNA hAT 19 111 -82 1 1660 413 323 12 30 chr6 141009706 141009872 -8507165 - RSINE1 SINE B4 0 165 3 1 1660 861 279 116 2 chr6 141011707 141011977 -8505060 - B4 SINE B4 -4 288 5 1 1660 2419 149 170 8 chr6 141012034 141012522 -8504515 + RMER19A LTR ERVK 1 569 -168 1 1660 2191 112 12 3 chr6 141012522 141012844 -8504193 + ORR1A2 LTR MaLR 1 325 -2 2 1660 2419 149 170 8 chr6 141012844 141012855 -8504182 + RMER19A LTR ERVK 570 580 -157 1 1660 6983 156 70 16 chr6 141012855 141014274 -8502763 + ORR1A2-int LTR MaLR 3 1509 -454 2 1660 968 203 0 44 chr6 141014278 141014484 -8502553 + LSU-rRNA_Hsa rRNA rRNA 119 315 -4720 2 1660 1147 105 23 6 chr6 141014486 141014659 -8502378 + RMER19A LTR ERVK 562 737 0 1 1660 423 297 137 25 chr6 141014911 141015225 -8501812 - Lx9 LINE L1 -5 7639 7162 2 1660 256 303 233 5 chr6 141016541 141016730 -8500307 - MIR SINE MIR -30 232 1 2 1660 698 247 115 37 chr6 141016842 141017111 -8499926 - B4A SINE B4 0 292 3 2 1660 495 0 0 0 chr6 141017224 141017279 -8499758 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1660 239 325 70 35 chr6 141017279 141017451 -8499586 - L1M3e LINE L1 -6820 210 33 2 1660 519 200 22 0 chr6 141017718 141017808 -8499229 - Lx8 LINE L1 -227 7246 7155 2 1660 414 238 218 11 chr6 141017809 141017983 -8499054 + Lx8 LINE L1 7262 7471 -2 2 1660 329 214 32 63 chr6 141017901 141017996 -8499041 + RMER1C Other Other 1240 1331 -11 2 1660 393 22 0 0 chr6 141018862 141018908 -8498129 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1660 334 347 8 8 chr6 141018908 141019030 -8498007 - RSINE1 SINE B4 -41 124 3 3 1660 981 279 39 59 chr6 141019054 141019412 -8497625 - ORR1E LTR MaLR -7 352 2 3 1660 904 233 24 5 chr6 141019711 141019918 -8497119 + B3 SINE B2 1 211 -5 3 1660 191 301 35 104 chr6 141020915 141021030 -8496007 + L2c LINE L2 3271 3377 -10 3 1660 238 311 88 24 chr6 141021188 141021313 -8495724 + MLT1A1 LTR MaLR 1 133 -275 3 1660 527 262 0 16 chr6 141021675 141021803 -8495234 + B4 SINE B4 138 263 -29 3 1660 549 0 0 0 chr6 141021856 141021917 -8495120 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1660 444 51 0 0 chr6 141022244 141022303 -8494734 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1660 25 0 0 0 chr6 141022924 141022949 -8494088 + AT_rich Low_complexity Low_complexity 1 25 0 3 1660 1108 226 0 9 chr6 141023345 141023555 -8493482 + B3 SINE B2 1 208 -8 3 1660 1449 126 49 159 chr6 141023947 141024351 -8492686 + ORR1B1 LTR MaLR 5 394 0 4 1660 657 275 10 29 chr6 141024765 141024971 -8492066 + B3 SINE B2 1 202 -14 4 1660 307 333 78 7 chr6 141025051 141025193 -8491844 + MTE2a LTR MaLR 3 154 -225 4 1660 379 243 75 56 chr6 141025112 141025273 -8491764 + MT2A LTR ERVL 75 238 -295 4 1660 216 0 0 0 chr6 141025281 141025305 -8491732 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1660 198 0 0 0 chr6 141025305 141025327 -8491710 + (GA)n Simple_repeat Simple_repeat 2 23 0 4 1660 209 139 23 0 chr6 141025339 141025382 -8491655 + GA-rich Low_complexity Low_complexity 1 44 0 4 1660 555 304 36 39 chr6 141025469 141025671 -8491366 + MT2A LTR ERVL 230 435 -98 4 1660 275 104 0 20 chr6 141025671 141025720 -8491317 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1660 555 304 36 39 chr6 141025720 141025822 -8491215 + MT2A LTR ERVL 436 532 -1 4 1660 1423 155 151 0 chr6 141025870 141026154 -8490883 + IAPEY3_LTR LTR ERVK 1 327 -5 4 1660 7805 16 0 0 chr6 141026356 141027225 -8489812 + L1Md_A LINE L1 5714 6582 0 4 1660 487 87 24 12 chr6 141028129 141028211 -8488826 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 5 1660 525 234 145 47 chr6 141028330 141028523 -8488514 - B3 SINE B2 -1 215 4 5 1660 739 71 0 0 chr6 141028602 141028701 -8488336 - B1_Mus2 SINE Alu 0 147 49 5 1660 315 346 46 20 chr6 141028705 141028900 -8488137 - L1MEf LINE L1 -5232 968 769 5 1660 516 284 62 40 chr6 141029490 141029666 -8487371 - B3A SINE B2 -16 182 3 5 1660 467 155 82 0 chr6 141031125 141031192 -8485845 - RSINE1 SINE B4 -38 127 55 5 1660 2044 141 9 12 chr6 141031192 141031522 -8485515 - ORR1A4 LTR MaLR 0 329 1 5 1660 467 155 82 0 chr6 141031522 141031551 -8485486 - RSINE1 SINE B4 -111 54 25 5 1660 222 339 150 37 chr6 141032879 141033066 -8483971 + B3 SINE B2 3 210 -6 5 1660 315 290 0 28 chr6 141033066 141033247 -8483790 + (CATA)n Simple_repeat Simple_repeat 3 178 0 5 1660 24 0 0 0 chr6 141033276 141033300 -8483737 + AT_rich Low_complexity Low_complexity 1 24 0 5 1661 452 229 144 0 chr6 141033781 141033899 -8483138 + B1F1 SINE Alu 15 149 0 6 1661 345 24 0 0 chr6 141033914 141033956 -8483081 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1661 1293 183 4 0 chr6 141033989 141034229 -8482808 - MTC LTR MaLR -180 241 1 6 1661 620 255 34 0 chr6 141034340 141034489 -8482548 + B3A SINE B2 12 165 -33 6 1661 2653 96 36 47 chr6 141034964 141035410 -8481627 + BGLII_B LTR ERVK 1 441 0 6 1661 748 207 109 21 chr6 141035438 141035630 -8481407 - B3 SINE B2 -7 209 1 6 1661 477 280 8 16 chr6 141036140 141036267 -8480770 + B1F1 SINE Alu 23 148 -1 6 1661 256 49 0 68 chr6 141037010 141037054 -8479983 - ID_B1 SINE B4 -2 222 182 6 1661 1089 82 0 27 chr6 141037068 141037218 -8479819 - B1_Mus2 SINE Alu 0 147 2 6 1661 741 135 0 0 chr6 141037753 141037879 -8479158 + (TG)n Simple_repeat Simple_repeat 1 126 0 6 1661 598 293 102 33 chr6 141037971 141038303 -8478734 - MLT1A0 LTR MaLR 0 365 11 7 1661 553 237 0 22 chr6 141038876 141039057 -8477980 + (TG)n Simple_repeat Simple_repeat 1 177 0 7 1661 856 237 12 77 chr6 141039142 141039389 -8477648 - B4 SINE B4 -59 233 3 7 1661 406 240 131 8 chr6 141040619 141040749 -8476288 + RSINE1 SINE B4 2 147 -18 7 1661 22 35 0 0 chr6 141040795 141040824 -8476213 + AT_rich Low_complexity Low_complexity 1 29 0 7 1661 550 208 136 5 chr6 141041097 141041281 -8475756 - B3 SINE B2 -5 211 4 7 1661 486 0 0 0 chr6 141042436 141042490 -8474547 + (TC)n Simple_repeat Simple_repeat 1 54 0 7 1661 351 0 0 0 chr6 141042490 141042528 -8474509 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1661 618 297 65 27 chr6 141042993 141043256 -8473781 - MTEa LTR MaLR -2 377 105 7 1661 462 88 0 0 chr6 141043484 141043552 -8473485 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1661 354 61 0 0 chr6 141046220 141046269 -8470768 + (GA)n Simple_repeat Simple_repeat 2 50 0 8 1661 598 274 115 20 chr6 141046290 141046543 -8470494 - B4 SINE B4 -14 278 2 8 1661 533 42 14 0 chr6 141046572 141046644 -8470393 + (TC)n Simple_repeat Simple_repeat 1 73 0 8 1661 213 39 0 0 chr6 141046679 141046705 -8470332 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 8 1661 842 167 0 6 chr6 141047855 141048036 -8469001 + CT-rich Low_complexity Low_complexity 1 180 0 8 1661 228 367 10 20 chr6 141048052 141048152 -8468885 - PB1D7 SINE Alu -7 113 15 8 1661 21 36 0 0 chr6 141048728 141048756 -8468281 + AT_rich Low_complexity Low_complexity 1 28 0 8 1661 525 262 20 40 chr6 141049043 141049194 -8467843 + RSINE1 SINE B4 8 155 -10 8 1661 234 0 0 0 chr6 141049199 141049225 -8467812 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 8 1661 321 288 12 0 chr6 141049286 141049366 -8467671 - ID4 SINE ID 0 83 3 8 1661 404 248 151 34 chr6 141050026 141050172 -8466865 + RSINE1 SINE B4 3 165 0 9 1661 465 252 30 0 chr6 141050388 141050487 -8466550 - B3 SINE B2 -114 102 1 9 1661 710 287 104 14 chr6 141050487 141050695 -8466342 - B4A SINE B4 -64 228 2 9 1661 195 184 0 0 chr6 141051099 141051137 -8465900 + CT-rich Low_complexity Low_complexity 1 38 0 9 1661 351 225 112 0 chr6 141052643 141052723 -8464314 - B3A SINE B2 -65 133 45 9 1661 1272 60 0 0 chr6 141052749 141052915 -8464122 + (TCTA)n Simple_repeat Simple_repeat 4 169 0 9 1661 267 31 0 0 chr6 141052942 141052974 -8464063 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 9 1661 2919 101 31 0 chr6 141052974 141053389 -8463648 - Lx3A LINE L1 -11 6970 6543 9 1661 675 213 42 14 chr6 141054667 141054810 -8462227 - B1_Mur2 SINE Alu 0 149 3 9 1661 544 280 82 11 chr6 141054817 141055001 -8462036 - B3A SINE B2 0 198 2 9 1661 227 269 53 21 chr6 141055063 141055158 -8461879 - MER5A DNA MER1_type -7 182 85 9 1661 191 236 9 45 chr6 141056076 141056187 -8460850 + CT-rich Low_complexity Low_complexity 1 107 0 1 1661 22 0 0 0 chr6 141056485 141056507 -8460530 + AT_rich Low_complexity Low_complexity 1 22 0 1 1661 830 178 10 5 chr6 141057156 141057563 -8459474 + (CATATA)n Simple_repeat Simple_repeat 1 409 0 1 1661 569 257 6 0 chr6 141057554 141057733 -8459304 + (CATA)n Simple_repeat Simple_repeat 1 180 0 1 1661 455 257 20 13 chr6 141058204 141058321 -8458716 - B3A SINE B2 -85 110 1 1 1661 1241 312 127 62 chr6 141058539 141059834 -8457203 - Charlie1a DNA MER1_type -37 1418 39 1 1661 240 262 60 92 chr6 141060007 141060192 -8456845 - L1M7 LINE L1 -4301 1917 1739 1 1661 206 156 22 0 chr6 141060461 141060506 -8456531 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1661 649 247 105 0 chr6 141060564 141060754 -8456283 - B3 SINE B2 0 216 7 1 1661 1368 74 5 0 chr6 141060927 141061143 -8455894 + (TCTCC)n Simple_repeat Simple_repeat 1 216 0 1 1661 1628 296 190 8 chr6 141061155 141062165 -8454872 - L1M2 LINE L1 -1193 4950 3757 1 1661 7647 191 118 23 chr6 141062348 141064745 -8452292 - Lx7 LINE L1 0 7696 5062 1 1661 839 60 34 0 chr6 141065926 141066043 -8450994 - B1_Mus1 SINE Alu 0 148 28 1 1661 216 298 18 0 chr6 141066190 141066247 -8450790 + GA-rich Low_complexity Low_complexity 3 60 0 1 1661 620 223 43 14 chr6 141066332 141066473 -8450564 - B1F SINE Alu 0 149 5 1 1661 194 286 195 9 chr6 141066697 141066810 -8450227 + MIRb SINE MIR 16 149 -119 1 1661 273 301 72 72 chr6 141067376 141067487 -8449550 - RSINE1 SINE B4 0 165 55 1 1661 513 0 0 0 chr6 141067511 141067568 -8449469 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1661 23 0 0 0 chr6 141068209 141068232 -8448805 + AT_rich Low_complexity Low_complexity 1 23 0 1 1661 582 267 41 7 chr6 141068258 141068405 -8448632 + RSINE1 SINE B4 4 155 -10 1 1661 232 254 85 0 chr6 141068441 141068500 -8448537 + B4A SINE B4 218 281 -11 1 1661 208 222 0 0 chr6 141068516 141068552 -8448485 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1661 2135 93 12 44 chr6 141069026 141069364 -8447673 + ORR1A2 LTR MaLR 1 327 0 1 1661 12826 44 5 0 chr6 141070030 141072270 -8444767 - L1Md_F3 LINE L1 -14 6570 4322 1 1661 797 251 36 10 chr6 141072737 141072930 -8444107 + B3A SINE B2 1 198 0 1 1661 931 244 78 41 chr6 141073566 141073861 -8443176 - MTE2b LTR MaLR 0 379 74 1 1661 1019 307 14 4 chr6 141073949 141074230 -8442807 + B4A SINE B4 5 288 -4 1 1661 369 0 0 0 chr6 141074256 141074297 -8442740 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1661 827 265 47 25 chr6 141074755 141074991 -8442046 + B4A SINE B4 48 288 -4 1 1661 264 122 0 0 chr6 141075011 141075052 -8441985 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1661 253 270 11 20 chr6 141076074 141076166 -8440871 - B1F SINE Alu -11 138 22 1 1661 362 182 0 0 chr6 141076412 141076478 -8440559 + B3A SINE B2 8 73 -125 1 1661 4419 109 39 6 chr6 141076936 141077598 -8439439 + Lx3A LINE L1 6282 6965 -16 1 1661 349 292 8 0 chr6 141077785 141077905 -8439132 + CT-rich Low_complexity Low_complexity 1 121 0 1 1661 278 260 0 72 chr6 141077905 141077988 -8439049 - ID4 SINE ID 0 83 7 1 1661 654 240 98 12 chr6 141079023 141079196 -8437841 - B3 SINE B2 -2 214 27 1 1661 180 0 0 0 chr6 141079196 141079216 -8437821 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1661 6733 3 0 0 chr6 141079229 141079959 -8437078 - L1Md_A LINE L1 0 6582 5853 1 1661 239 175 0 0 chr6 141079959 141079999 -8437038 - B3A SINE B2 -158 40 1 1 1661 519 17 0 0 chr6 141080000 141080060 -8436977 + (TATG)n Simple_repeat Simple_repeat 2 61 0 1 1661 483 249 133 44 chr6 141080078 141080259 -8436778 - B3A SINE B2 -1 197 1 1 1661 269 283 9 9 chr6 141081076 141081183 -8435854 - L1MD LINE L1 -2139 5856 5750 1 1661 408 40 0 0 chr6 141081845 141081895 -8435142 + (GGA)n Simple_repeat Simple_repeat 2 51 0 1 1661 400 275 80 94 chr6 141082073 141082274 -8434763 - B3A SINE B2 0 198 1 1 1661 630 110 50 0 chr6 141083754 141083854 -8433183 - B2_Mm2 SINE B2 -88 107 3 1 1661 566 222 43 11 chr6 141083981 141084148 -8432889 + B3A SINE B2 36 205 -11 1 1661 341 299 8 17 chr6 141084466 141084585 -8432452 + B4A SINE B4 2 119 -173 1 1661 217 183 33 0 chr6 141084750 141084810 -8432227 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1661 624 155 37 0 chr6 141084824 141084985 -8432052 + (CA)n Simple_repeat Simple_repeat 1 167 0 1 1661 213 208 26 13 chr6 141085032 141085110 -8431927 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 1 1661 378 0 0 0 chr6 141085138 141085180 -8431857 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1661 207 0 0 0 chr6 141085523 141085546 -8431491 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1661 248 140 0 39 chr6 141086055 141086107 -8430930 + T-rich Low_complexity Low_complexity 2 51 0 1 1661 282 267 9 65 chr6 141087276 141087384 -8429653 + PB1D10 SINE Alu 9 110 -7 1 1661 550 264 151 33 chr6 141087414 141087552 -8429485 + RMER10A LTR ERVL 17 159 -283 1 1661 1620 0 0 0 chr6 141087552 141087803 -8429234 + (TTCCC)n Simple_repeat Simple_repeat 1 251 0 1 1661 550 264 151 33 chr6 141087803 141088028 -8429009 + RMER10A LTR ERVL 160 423 -19 1 1661 243 266 31 15 chr6 141088242 141088307 -8428730 + ID2 SINE ID 9 74 -9 1 1661 228 67 0 0 chr6 141088401 141088431 -8428606 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1661 704 254 146 4 chr6 141088954 141089207 -8427830 - B4 SINE B4 -2 290 2 1 1661 433 315 87 47 chr6 141089593 141089638 -8427399 + MER54A LTR ERVL 1 45 -856 1 1661 1937 118 16 29 chr6 141089638 141089951 -8427086 + RLTR27 LTR ERVK 1 309 0 1 1661 433 315 87 47 chr6 141089951 141090158 -8426879 + MER54A LTR ERVL 46 263 -638 1 1661 263 200 36 0 chr6 141090454 141090509 -8426528 - MTEb LTR MaLR -71 308 252 1 1661 541 334 154 20 chr6 141091185 141091625 -8425412 - L2 LINE L2 -472 2947 2449 1 1661 283 305 37 0 chr6 141092154 141092236 -8424801 - PB1D10 SINE Alu -7 110 26 1 1661 292 302 35 0 chr6 141092331 141092417 -8424620 - L2 LINE L2 -2880 539 451 1 1661 291 206 68 14 chr6 141092433 141092507 -8424530 - URR1A DNA MER1_type -148 78 1 1 1661 445 316 0 29 chr6 141093331 141093468 -8423569 - RSINE1 SINE B4 -2 163 31 1 1661 640 283 154 16 chr6 141093872 141094177 -8422860 - Lx8 LINE L1 -130 7343 6997 1 1661 395 309 97 13 chr6 141094187 141094341 -8422696 - Lx7 LINE L1 -754 6942 6776 1 1661 6399 28 1 0 chr6 141094345 141095085 -8421952 + L1Md_F2 LINE L1 4845 5585 -298 1 1661 8201 42 1 10 chr6 141095086 141096091 -8420946 + L1Md_F2 LINE L1 5587 6582 0 1 1661 359 293 193 0 chr6 141096115 141096265 -8420772 - Lx8 LINE L1 -701 6772 6594 1 1661 196 0 114 0 chr6 141096300 141096344 -8420693 + (CATAT)n Simple_repeat Simple_repeat 2 50 0 1 1661 1154 326 51 16 chr6 141097455 141097948 -8419089 - LTR40a LTR ERVL -8 511 2 1 1661 4482 85 23 3 chr6 141098125 141098737 -8418300 - Lx3_Mus LINE L1 0 7009 6386 1 1661 4383 59 44 2 chr6 141098738 141099549 -8417488 - Lx3_Mus LINE L1 -812 6197 5326 1 1661 733 262 54 11 chr6 141099849 141100034 -8417003 - B3 SINE B2 -4 212 20 1 1661 269 197 0 15 chr6 141100124 141100191 -8416846 + CT-rich Low_complexity Low_complexity 2 67 0 1 1661 45 55 0 0 chr6 141100360 141100433 -8416604 + AT_rich Low_complexity Low_complexity 1 73 0 1 1661 459 0 0 0 chr6 141100503 141100554 -8416483 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1661 620 302 18 28 chr6 141101032 141101250 -8415787 + MTC LTR MaLR 1 216 -205 1 1661 27 29 0 0 chr6 141101295 141101329 -8415708 + AT_rich Low_complexity Low_complexity 1 34 0 1 1661 10512 78 7 28 chr6 141101329 141103592 -8413445 - Lx3_Mus LINE L1 0 7009 4794 1 1661 14751 104 46 10 chr6 141103569 141106480 -8410557 - Lx3_Mus LINE L1 -2619 3267 4 1 1661 1199 222 149 15 chr6 141106490 141106893 -8410144 - MT2A LTR ERVL -76 457 1 1 1661 312 193 0 0 chr6 141106893 141106950 -8410087 - MERVL_2A-int LTR ERVL 0 5761 5705 1 1661 289 159 0 45 chr6 141106958 141107024 -8410013 - ORR1A3-int LTR MaLR -1334 629 567 1 1661 789 181 29 53 chr6 141107127 141107353 -8409684 + B2_Mm2 SINE B2 3 216 0 1 1661 316 250 33 0 chr6 141107381 141107473 -8409564 + L1M3 LINE L1 2600 2694 -3446 1 1661 459 0 0 0 chr6 141107623 141107674 -8409363 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1661 292 333 18 60 chr6 141107679 141107845 -8409192 + MER5B DNA MER1_type 1 159 -19 1 1661 254 230 40 26 chr6 141108332 141108408 -8408629 + ID4 SINE ID 4 80 -3 1 1661 182 224 0 45 chr6 141108410 141108430 -8408607 + G-rich Low_complexity Low_complexity 2 20 0 1 1661 1208 91 6 0 chr6 141108430 141108606 -8408431 + (GAGAA)n Simple_repeat Simple_repeat 1 177 0 1 1661 182 224 0 45 chr6 141108606 141108674 -8408363 + G-rich Low_complexity Low_complexity 21 86 0 1 1661 201 147 0 0 chr6 141108818 141108852 -8408185 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 1 1661 845 247 42 5 chr6 141109548 141109739 -8407298 + B3 SINE B2 2 199 -17 1 1661 34 42 0 0 chr6 141109770 141109818 -8407219 + AT_rich Low_complexity Low_complexity 1 48 0 1 1661 716 225 0 50 chr6 141109900 141110059 -8406978 - RSINE1 SINE B4 -10 155 5 1 1661 211 176 0 0 chr6 141110070 141110104 -8406933 + (CAG)n Simple_repeat Simple_repeat 2 35 0 1 1661 221 298 0 35 chr6 141111455 141111542 -8405495 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 1 1661 2225 98 109 39 chr6 141111667 141112051 -8404986 - IAPLTR2a LTR ERVK 0 411 1 1 1661 3292 42 7 5 chr6 141112141 141112547 -8404490 - L1Md_F2 LINE L1 -12 6570 6164 1 1661 31 26 0 0 chr6 141113214 141113252 -8403785 + AT_rich Low_complexity Low_complexity 1 38 0 1 1661 1429 50 21 21 chr6 141113254 141113440 -8403597 + B2_Mm2 SINE B2 2 187 -8 1 1661 633 311 11 11 chr6 141113464 141113646 -8403391 - B3A SINE B2 -16 182 1 1 1661 1282 201 59 55 chr6 141114049 141114419 -8402618 + MT2A LTR ERVL 9 511 -90 1 1661 1001 113 0 9 chr6 141114480 141114704 -8402333 + (CA)n Simple_repeat Simple_repeat 1 221 0 1 1661 236 168 0 0 chr6 141114721 141114786 -8402251 + MT2A LTR ERVL 466 551 -4 1 1661 570 218 41 34 chr6 141116520 141116667 -8400370 + B3 SINE B2 1 148 -68 2 1661 576 0 0 0 chr6 141116670 141116734 -8400303 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1661 515 282 118 63 chr6 141116914 141117330 -8399707 - MER57D LTR ERV1 -2 432 11 2 1661 828 220 20 30 chr6 141117610 141117807 -8399230 + B3 SINE B2 9 203 -13 2 1661 486 309 47 21 chr6 141118619 141118811 -8398226 + B3A SINE B2 1 197 -1 2 1661 3737 271 32 36 chr6 141118814 141119778 -8397259 - RMER1C Other Other -1 1341 382 2 1661 214 286 0 16 chr6 141121133 141121197 -8395840 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 2 1661 522 54 43 21 chr6 141122216 141122310 -8394727 + (TAGA)n Simple_repeat Simple_repeat 1 96 0 2 1661 930 263 9 0 chr6 141122401 141122614 -8394423 - B3 SINE B2 0 216 2 2 1661 3064 218 43 26 chr6 141122624 141123348 -8393689 - RMER1C Other Other -1 1341 606 2 1661 318 276 18 45 chr6 141123543 141123653 -8393384 - RMER1B Other Other -913 153 47 2 1661 450 241 46 0 chr6 141123721 141123829 -8393208 - ID_B1 SINE B4 -6 218 106 2 1661 938 259 79 89 chr6 141124787 141125168 -8391869 - MTEa LTR MaLR 0 379 3 2 1661 222 268 99 0 chr6 141125799 141125870 -8391167 + ID4_ SINE ID 2 79 -4 2 1661 234 318 11 22 chr6 141126267 141126357 -8390680 - B3 SINE B2 -125 91 3 2 1661 225 290 29 0 chr6 141126749 141126818 -8390219 - ID4_ SINE ID -10 73 3 2 1661 284 229 0 62 chr6 141127251 141127316 -8389721 + RSINE1 SINE B4 2 62 -103 2 1661 521 290 17 69 chr6 141128120 141128294 -8388743 - B3A SINE B2 -33 165 1 2 1661 330 308 40 71 chr6 141128291 141128304 -8388733 + CYRA11_Mm Unknown Y-chromosome 164 243 -374 2 1661 1098 169 32 14 chr6 141128304 141128520 -8388517 - URR1B DNA MER1_type -5 220 1 2 1661 330 308 40 71 chr6 141128520 141128543 -8388494 + CYRA11_Mm Unknown Y-chromosome 244 407 -210 2 1661 535 244 107 19 chr6 141128540 141128573 -8388464 - B3 SINE B2 -3 213 169 2 1661 397 62 31 0 chr6 141128573 141128638 -8388399 + (TATG)n Simple_repeat Simple_repeat 4 70 0 2 1661 535 244 107 19 chr6 141128638 141128763 -8388274 - B3 SINE B2 -48 168 42 2 1661 271 277 23 35 chr6 141128761 141128847 -8388190 - MLT1B LTR MaLR -93 297 213 2 1661 5027 162 72 34 chr6 141129020 141129412 -8387625 - RMER12 LTR ERVK -135 1187 786 2 1661 486 49 0 0 chr6 141129412 141129473 -8387564 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1661 5027 162 72 34 chr6 141129473 141130213 -8386824 - RMER12 LTR ERVK -537 785 13 2 1661 401 285 54 38 chr6 141130191 141130377 -8386660 + RLTR16 LTR ERVK 32 220 -285 2 1661 325 118 0 0 chr6 141130738 141130789 -8386248 - RMER12 LTR ERVK -1265 57 7 2 1661 974 98 91 11 chr6 141131472 141131647 -8385390 - L1_Mus4 LINE L1 -4 6632 6444 2 1661 604 326 5 16 chr6 141131647 141131831 -8385206 - ID_B1 SINE B4 -13 211 30 2 1661 544 232 41 12 chr6 141133103 141133273 -8383764 + ORR1B2 LTR MaLR 1 175 -192 2 1661 3384 136 31 6 chr6 141133273 141133821 -8383216 + Lx4A LINE L1 5887 6448 -610 2 1661 2116 107 3 3 chr6 141133825 141133872 -8383165 - ORR1A2 LTR MaLR -8 319 273 2 1661 1583 29 18 46 chr6 141133872 141134091 -8382946 - L1Md_F3 LINE L1 0 6584 6372 2 1661 2116 107 3 3 chr6 141134091 141134362 -8382675 - ORR1A2 LTR MaLR -55 272 1 2 1661 3492 145 11 82 chr6 141134362 141135023 -8382014 + Lx4A LINE L1 6444 7057 -1 2 1661 278 204 0 0 chr6 141135052 141135101 -8381936 + ORR1B2 LTR MaLR 322 370 -8 2 1661 571 364 65 37 chr6 141135787 141136221 -8380816 - MLT1D LTR MaLR -21 484 39 2 1661 553 235 25 0 chr6 141136270 141136389 -8380648 + RSINE1 SINE B4 3 124 -41 2 1661 269 183 9 28 chr6 141137068 141137175 -8379862 + (TA)n Simple_repeat Simple_repeat 1 105 0 2 1661 571 167 9 18 chr6 141137289 141137399 -8379638 - B1F2 SINE Alu -1 148 40 2 1661 229 186 48 48 chr6 141137349 141137411 -8379626 - 4.5SRNA scRNA scRNA -10 84 23 2 1661 384 22 0 0 chr6 141137502 141137547 -8379490 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 2 1661 240 152 0 0 chr6 141138763 141138809 -8378228 - Lx9 LINE L1 -3 7641 7596 2 1661 314 366 60 37 chr6 141138947 141139299 -8377738 - MLT1D-int LTR MaLR -353 1034 675 2 1661 47 19 0 0 chr6 141139299 141139353 -8377684 + AT_rich Low_complexity Low_complexity 1 54 0 2 1661 431 303 138 53 chr6 141139732 141140073 -8376964 + MLT1A LTR MaLR 3 372 -2 2 1661 333 0 0 0 chr6 141140185 141140222 -8376815 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1661 342 0 0 0 chr6 141141507 141141545 -8375492 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2 1661 443 303 8 0 chr6 141141998 141142120 -8374917 + RSINE1 SINE B4 1 123 -42 2 1661 429 20 0 0 chr6 141142196 141142246 -8374791 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1661 432 0 0 0 chr6 141142246 141142293 -8374744 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1661 372 294 40 56 chr6 141142385 141142583 -8374454 + L1MA4 LINE L1 5726 5938 -362 2 1661 219 103 0 0 chr6 141142722 141142761 -8374276 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1661 1063 164 85 27 chr6 141143360 141143633 -8373404 - RLTR12A LTR ERVK -4 564 285 2 1661 369 0 0 0 chr6 141143633 141143674 -8373363 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 2 1661 767 193 42 55 chr6 141143674 141143889 -8373148 - RLTR12A LTR ERVK -219 309 113 2 1661 3344 35 2 2 chr6 141143963 141144397 -8372640 + ORR1A1-int LTR MaLR 1359 1792 0 2 1661 3009 38 0 6 chr6 141144397 141144745 -8372292 + ORR1A1 LTR MaLR 1 346 0 2 1661 857 60 0 8 chr6 141145036 141145153 -8371884 + (GA)n Simple_repeat Simple_repeat 1 116 0 2 1661 227 299 38 38 chr6 141145270 141145350 -8371687 + ID4_ SINE ID 4 83 0 2 1661 24 32 0 0 chr6 141145474 141145505 -8371532 + AT_rich Low_complexity Low_complexity 1 31 0 2 1661 518 285 38 6 chr6 141145521 141145680 -8371357 - RSINE1 SINE B4 0 165 2 2 1661 540 227 42 21 chr6 141145784 141145928 -8371109 + B1F2 SINE Alu 3 149 0 2 1661 258 268 62 23 chr6 141145965 141146095 -8370942 + L1MEe LINE L1 850 984 -3870 2 1661 256 225 14 40 chr6 141146362 141146436 -8370601 - Ricksha_0 DNA MuDR -385 1348 1277 2 1661 498 276 49 49 chr6 141146466 141146691 -8370346 - Ricksha_0 DNA MuDR -557 1169 945 2 1661 697 261 20 25 chr6 141146722 141146926 -8370111 + B3 SINE B2 14 216 0 2 1661 258 32 0 0 chr6 141146961 141146992 -8370045 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1661 308 83 0 20 chr6 141146992 141147040 -8369997 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1661 922 229 109 77 chr6 141147258 141147552 -8369485 - Ricksha_0 DNA MuDR -1029 697 382 2 1661 986 222 29 5 chr6 141147552 141147760 -8369277 - B3 SINE B2 -3 213 1 2 1661 922 229 109 77 chr6 141147760 141147805 -8369232 - Ricksha_0 DNA MuDR -1345 381 347 2 1661 3329 43 5 0 chr6 141147839 141148232 -8368805 - MTA_Mm LTR MaLR -1 395 1 2 1661 237 259 119 36 chr6 141150435 141150519 -8366518 + ID_B1 SINE B4 134 224 0 2 1661 435 224 0 0 chr6 141150960 141151067 -8365970 + GA-rich Low_complexity Low_complexity 3 109 0 2 1661 7759 34 28 2 chr6 141151304 141152228 -8364809 + L1Md_F2 LINE L1 5633 6580 -2 2 1661 290 200 31 115 chr6 141152656 141152752 -8364285 - MLT1A0 LTR MaLR 0 365 278 2 1661 509 298 45 152 chr6 141152935 141153133 -8363904 + ID_B1 SINE B4 50 226 -66 2 1661 396 218 0 13 chr6 141153215 141153294 -8363743 - ID4 SINE ID -3 80 3 2 1661 330 245 20 50 chr6 141153326 141153425 -8363612 - MLT1A0 LTR MaLR -269 96 1 2 1661 2466 227 80 10 chr6 141153558 141154171 -8362866 - Lx2B LINE L1 -20 6980 6325 2 1661 221 170 57 0 chr6 141154387 141154440 -8362597 + MER5A DNA MER1_type 78 133 -56 2 1661 558 263 75 50 chr6 141155223 141155336 -8361701 + RSINE1 SINE B4 2 117 -48 2 1661 1293 61 0 0 chr6 141155336 141155516 -8361521 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1661 558 263 75 50 chr6 141155516 141155562 -8361475 + RSINE1 SINE B4 118 165 0 2 1661 1355 191 39 52 chr6 141156429 141156839 -8360198 + RMER16 LTR ERVK 1 533 0 2 1661 593 286 11 0 chr6 141157181 141157359 -8359678 + B3A SINE B2 1 180 -18 2 1661 284 254 16 0 chr6 141158235 141158298 -8358739 + ID4 SINE ID 1 64 -19 2 1661 396 0 0 0 chr6 141158298 141158342 -8358695 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1661 402 245 7 67 chr6 141158373 141158522 -8358515 - RSINE1 SINE B4 -4 161 22 2 1661 540 0 0 0 chr6 141158562 141158622 -8358415 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 2 1661 426 269 30 8 chr6 141158627 141158758 -8358279 - ID_B1 SINE B4 0 224 91 2 1661 547 266 98 53 chr6 141158835 141159146 -8357891 + RMER20B LTR ERVK 92 413 -214 2 1661 228 312 20 61 chr6 141159158 141159257 -8357780 + RMER20B LTR ERVK 495 589 -38 2 207 38707 15 1 7 chr6 141159522 141164904 -8352133 + L1Md_A LINE L1 242 5586 -297 2 1662 8911 18 0 0 chr6 141164904 141165900 -8351137 + L1Md_A LINE L1 5587 6582 0 2 1662 1060 302 110 17 chr6 141165909 141166380 -8350657 + Lx8 LINE L1 6954 7468 -5 2 1662 898 267 14 18 chr6 141166409 141166687 -8350350 + L1M2 LINE L1 5491 5767 -530 2 1662 515 189 94 43 chr6 141166688 141166826 -8350211 + B3A SINE B2 1 145 -53 2 1662 292 283 140 31 chr6 141166853 141167192 -8349845 + MLT1D LTR MaLR 30 453 -52 2 1662 221 0 35 0 chr6 141167286 141167315 -8349722 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1662 244 325 0 38 chr6 141167451 141167531 -8349506 + ID4_ SINE ID 3 79 -4 2 1662 286 233 0 40 chr6 141167537 141167613 -8349424 + CT-rich Low_complexity Low_complexity 4 76 0 2 1662 1985 96 134 46 chr6 141168463 141168813 -8348224 + Lx3B LINE L1 6593 6973 0 2 1662 1032 44 82 0 chr6 141168826 141168961 -8348076 + B1_Mm SINE Alu 1 146 -1 2 1662 198 0 0 0 chr6 141168985 141169007 -8348030 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2 1662 748 278 110 58 chr6 141169052 141169380 -8347657 - ORR1E LTR MaLR -6 353 9 2 1662 202 184 41 0 chr6 141169396 141169445 -8347592 + (CAGA)n Simple_repeat Simple_repeat 3 53 0 2 1662 288 77 0 0 chr6 141170154 141170193 -8346844 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1662 22 35 0 0 chr6 141170606 141170635 -8346402 + AT_rich Low_complexity Low_complexity 1 29 0 2 1662 269 263 118 71 chr6 141171246 141171373 -8345664 - MLT1E2 LTR MaLR -434 193 61 2 1662 607 302 39 8 chr6 141171448 141171705 -8345332 + LTR37A LTR ERV1 84 348 -78 2 1662 917 306 21 0 chr6 141171864 141172204 -8344833 + L1M3 LINE L1 3717 4063 -2077 2 1662 1096 272 60 16 chr6 141173652 141173966 -8343071 + Lx6 LINE L1 7107 7434 -26 2 1662 235 213 33 0 chr6 141173981 141174042 -8342995 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1662 3439 39 2 0 chr6 141174323 141174729 -8342308 - L1Md_F2 LINE L1 -575 6009 5603 3 1662 3753 44 2 4 chr6 141174729 141175184 -8341853 + L1Md_F2 LINE L1 6129 6582 0 3 1662 294 278 14 0 chr6 141176556 141176628 -8340409 + RSINE1 SINE B4 56 128 -37 3 1662 621 95 26 0 chr6 141176643 141176759 -8340278 + (CA)n Simple_repeat Simple_repeat 1 119 0 3 1662 774 136 9 26 chr6 141176841 141177189 -8339848 + (CA)n Simple_repeat Simple_repeat 1 341 0 3 1662 246 152 0 0 chr6 141177200 141177259 -8339778 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1662 180 0 0 0 chr6 141177503 141177523 -8339514 + (TC)n Simple_repeat Simple_repeat 1 20 0 3 1662 414 0 0 0 chr6 141177523 141177568 -8339469 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1662 511 277 7 35 chr6 141177675 141177817 -8339220 - ID_B1 SINE B4 0 224 87 3 1662 208 183 21 31 chr6 141178636 141178732 -8338305 + CT-rich Low_complexity Low_complexity 2 96 0 3 1662 819 242 5 25 chr6 141178750 141178949 -8338088 - ID_B1 SINE B4 0 224 30 3 1662 324 0 0 0 chr6 141179217 141179253 -8337784 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3 1662 202 222 0 43 chr6 141179688 141179735 -8337302 + polypyrimidine Low_complexity Low_complexity 1 45 0 3 1662 371 226 17 29 chr6 141179735 141179908 -8337129 + CT-rich Low_complexity Low_complexity 4 174 0 3 1662 275 270 140 0 chr6 141179911 141180011 -8337026 - ID_B1 SINE B4 -29 195 82 3 1662 300 27 0 0 chr6 141180354 141180391 -8336646 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1662 359 318 50 39 chr6 141180820 141181000 -8336037 - ORR1E LTR MaLR -177 182 1 3 1662 634 315 13 48 chr6 141181361 141181588 -8335449 + ID_B1 SINE B4 1 219 -5 3 1662 5295 51 1 3 chr6 141181981 141182628 -8334409 - L1Md_F2 LINE L1 0 6582 5937 3 1662 5031 19 2 0 chr6 141182628 141183259 -8333778 + L1Md_F2 LINE L1 5314 5945 -637 3 1662 267 322 0 11 chr6 141183619 141183710 -8333327 + (CA)n Simple_repeat Simple_repeat 2 91 0 3 1662 4085 87 30 12 chr6 141183778 141184370 -8332667 - Lx3_Mus LINE L1 -1 7008 6406 3 1662 6437 67 26 9 chr6 141184370 141185249 -8331788 + L1_Mur1 LINE L1 3951 4844 -1042 3 1662 842 271 90 4 chr6 141186588 141186855 -8330182 + AmnSINE1 SINE SINE 28 317 -258 3 1662 468 0 0 0 chr6 141187441 141187493 -8329544 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1662 335 155 21 0 chr6 141187861 141187958 -8329079 + CT-rich Low_complexity Low_complexity 4 102 0 3 1662 1056 231 45 82 chr6 141188783 141189137 -8327900 + Lx7 LINE L1 7356 7696 0 3 1662 280 263 41 22 chr6 141189492 141189613 -8327424 + L1MB7 LINE L1 4866 4995 -1151 3 1662 667 291 50 22 chr6 141189616 141189894 -8327143 + B4A SINE B4 1 286 -6 3 1662 299 290 126 39 chr6 141189967 141190197 -8326840 + L1MB7 LINE L1 4983 5232 -914 3 1662 651 284 31 31 chr6 141190246 141190504 -8326533 + L1MB7 LINE L1 5792 6049 -135 3 1662 427 234 6 6 chr6 141190597 141190769 -8326268 + (TG)n Simple_repeat Simple_repeat 1 172 0 3 1662 272 190 13 0 chr6 141190783 141190862 -8326175 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 1662 600 190 0 0 chr6 141190882 141191040 -8325997 + (TG)n Simple_repeat Simple_repeat 1 158 0 3 1662 618 259 18 30 chr6 141191111 141191278 -8325759 - RSINE1 SINE B4 0 165 1 3 1662 278 53 70 0 chr6 141191303 141191360 -8325677 + (CAA)n Simple_repeat Simple_repeat 2 62 0 3 1662 481 273 22 78 chr6 141191362 141191500 -8325537 + B3A SINE B2 30 161 -37 3 1662 252 0 0 0 chr6 141191500 141191528 -8325509 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1662 504 0 0 0 chr6 141191528 141191583 -8325454 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1662 481 273 22 78 chr6 141191583 141191622 -8325415 + B3A SINE B2 162 197 -1 3 1662 23 33 0 0 chr6 141193284 141193314 -8323723 + AT_rich Low_complexity Low_complexity 1 30 0 3 1662 233 358 122 42 chr6 141193329 141193729 -8323308 - L2 LINE L2 -421 2998 2567 3 1662 300 271 88 29 chr6 141194560 141194697 -8322340 - RSINE1 SINE B4 -18 147 3 3 1662 210 344 0 0 chr6 141195844 141195905 -8321132 - B1F SINE Alu -65 84 24 3 1662 818 224 21 21 chr6 141195969 141196156 -8320881 - B3A SINE B2 -10 188 2 3 1662 210 37 0 0 chr6 141196204 141196231 -8320806 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1662 471 244 39 54 chr6 141196318 141196448 -8320589 + RSINE1 SINE B4 3 130 -35 3 1662 636 177 16 0 chr6 141197110 141197296 -8319741 + CT-rich Low_complexity Low_complexity 1 188 0 3 1662 672 190 12 6 chr6 141197459 141197628 -8319409 + GA-rich Low_complexity Low_complexity 1 170 0 3 1662 201 222 0 0 chr6 141197649 141197685 -8319352 + G-rich Low_complexity Low_complexity 1 36 0 3 1662 342 182 0 0 chr6 141197863 141197929 -8319108 + GA-rich Low_complexity Low_complexity 2 67 0 3 1662 497 30 0 15 chr6 141200553 141200621 -8316416 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 1662 529 250 21 35 chr6 141202846 141202991 -8314046 - RSINE1 SINE B4 -10 155 13 3 1662 266 288 0 52 chr6 141203050 141203127 -8313910 - ID4 SINE ID -2 81 9 3 1662 219 152 0 0 chr6 141204526 141204572 -8312465 + T-rich Low_complexity Low_complexity 1 46 0 3 1662 329 274 117 31 chr6 141205031 141205159 -8311878 + ID_B1 SINE B4 86 224 0 3 1662 209 229 0 0 chr6 141208046 141208066 -8308971 + polypyrimidine Low_complexity Low_complexity 29 48 0 3 1662 492 18 0 0 chr6 141208066 141208123 -8308914 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1662 209 229 0 0 chr6 141208123 141208150 -8308887 + polypyrimidine Low_complexity Low_complexity 2 28 0 3 1662 268 300 0 0 chr6 141209068 141209148 -8307889 + B3A SINE B2 1 80 -118 3 1662 467 286 66 56 chr6 141209370 141209566 -8307471 - B3A SINE B2 0 198 1 3 1662 222 321 45 45 chr6 141209602 141209690 -8307347 + PB1D10 SINE Alu 1 88 -29 3 1662 303 278 11 22 chr6 141209699 141209791 -8307246 + GA-rich Low_complexity Low_complexity 1 91 0 3 1662 310 249 177 0 chr6 141211633 141211757 -8305280 + ID_B1 SINE B4 84 224 0 3 1662 2204 280 156 30 chr6 141212465 141213360 -8303677 - Lx8 LINE L1 -122 7351 6344 3 1662 502 301 78 85 chr6 141214062 141214665 -8302372 - LTR48B LTR ERV1 0 644 2 3 1662 385 306 58 58 chr6 141215598 141215614 -8301423 - B3A SINE B2 0 198 184 3 1662 1167 187 11 50 chr6 141215614 141215896 -8301141 - Lx9 LINE L1 -3 7641 7371 3 1662 385 306 58 58 chr6 141215896 141216070 -8300967 - B3A SINE B2 -15 183 8 3 1662 278 54 0 0 chr6 141217405 141217442 -8299595 - Lx2 LINE L1 -374 6623 6587 3 1662 2118 97 109 6 chr6 141217443 141217774 -8299263 + Lx2 LINE L1 6633 6997 0 3 1662 429 233 16 49 chr6 141218099 141218221 -8298816 + ID_B1 SINE B4 105 222 -2 3 1662 213 39 0 0 chr6 141218604 141218630 -8298407 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1662 454 333 58 0 chr6 141219747 141219885 -8297152 - RSINE1 SINE B4 -12 153 8 3 1662 231 388 13 13 chr6 141220922 141221076 -8295961 + MER20 DNA MER1_type 4 157 -62 3 1662 475 263 0 25 chr6 141221084 141221223 -8295814 + B3A SINE B2 74 197 -19 3 1662 312 27 0 0 chr6 141221761 141221798 -8295239 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1662 559 263 58 12 chr6 141221966 141222139 -8294898 - B3A SINE B2 -15 183 3 3 1662 337 343 102 0 chr6 141222638 141222775 -8294262 - RSINE1 SINE B4 -10 155 5 3 1662 383 249 6 0 chr6 141223640 141224008 -8293029 + (CA)n Simple_repeat Simple_repeat 1 370 0 3 1662 28 48 0 0 chr6 141224608 141224650 -8292387 + AT_rich Low_complexity Low_complexity 1 42 0 3 1662 1232 130 17 6 chr6 141224662 141224840 -8292197 + B2_Mm2 SINE B2 2 181 -14 3 1662 4232 67 0 8 chr6 141225500 141226014 -8291023 + L1Md_F2 LINE L1 6061 6570 -12 3 1662 530 321 160 48 chr6 141226336 141226879 -8290158 - MER44D DNA MER2_type -93 612 9 3 1662 662 251 105 87 chr6 141226899 141227291 -8289746 - L1MB3 LINE L1 -73 6110 5712 3 1662 235 214 33 67 chr6 141227700 141227760 -8289277 - B3 SINE B2 -6 210 153 3 1662 253 332 79 72 chr6 141228200 141228518 -8288519 - Lx8 LINE L1 -1 7472 7153 3 1662 23 68 0 0 chr6 141230075 141230119 -8286918 + AT_rich Low_complexity Low_complexity 1 44 0 3 1662 558 0 0 0 chr6 141230247 141230309 -8286728 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1662 458 284 63 63 chr6 141230331 141230538 -8286499 - B4A SINE B4 -85 207 1 3 1662 544 322 14 7 chr6 141231717 141231879 -8285158 + ID_B1 SINE B4 81 245 -47 3 1662 180 179 0 0 chr6 141231887 141231926 -8285111 + GA-rich Low_complexity Low_complexity 3 41 0 3 1662 35 41 0 0 chr6 141231945 141231994 -8285043 + AT_rich Low_complexity Low_complexity 1 49 0 3 1662 213 135 0 26 chr6 141232256 141232294 -8284743 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 3 1662 1250 276 124 100 chr6 141232792 141233267 -8283770 - L1MA9 LINE L1 0 6312 5783 3 1662 408 125 0 0 chr6 141233267 141233331 -8283706 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1662 1250 276 124 100 chr6 141233331 141233773 -8283264 - L1MA9 LINE L1 -530 5782 5373 3 1662 230 337 72 0 chr6 141234046 141234129 -8282908 + B3 SINE B2 112 200 -16 3 1662 3008 81 25 8 chr6 141234316 141234714 -8282323 - L1Md_F2 LINE L1 -6 6576 6172 3 1662 318 98 0 0 chr6 141235509 141235560 -8281477 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 3 1662 423 56 0 0 chr6 141235740 141235794 -8281243 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1662 491 307 93 48 chr6 141235801 141236071 -8280966 - B4A SINE B4 -7 285 4 3 1662 342 45 0 0 chr6 141236077 141236121 -8280916 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3 1662 368 260 170 0 chr6 141236129 141236229 -8280808 - PB1D7 SINE Alu -3 117 1 3 1662 1356 67 0 0 chr6 141236670 141236850 -8280187 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1662 1326 85 0 0 chr6 141236866 141237397 -8279640 + (TG)n Simple_repeat Simple_repeat 1 531 0 3 1662 1574 222 119 3 chr6 141237404 141237766 -8279271 + MTD LTR MaLR 16 419 0 3 1662 775 171 0 19 chr6 141237839 141238000 -8279037 - Lx3A LINE L1 -2 6979 6822 3 1662 508 286 21 7 chr6 141238524 141238665 -8278372 - B1F SINE Alu -6 143 1 3 1662 409 233 29 10 chr6 141239071 141239175 -8277862 - PB1D7 SINE Alu -1 119 14 3 1662 474 252 45 38 chr6 141239656 141239788 -8277249 - B1F2 SINE Alu -11 138 6 3 1662 799 269 57 33 chr6 141239797 141240097 -8276940 - L1MB2 LINE L1 -4 6167 5861 3 1662 212 308 15 0 chr6 141240574 141240639 -8276398 + CT-rich Low_complexity Low_complexity 4 69 0 4 1662 240 143 0 0 chr6 141240643 141240685 -8276352 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1662 360 200 0 0 chr6 141240861 141240936 -8276101 + (CATATA)n Simple_repeat Simple_repeat 1 75 0 4 1662 180 111 0 0 chr6 141242820 141242847 -8274190 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1662 582 203 73 8 chr6 141243053 141243177 -8273860 + B1_Mur2 SINE Alu 2 133 -16 4 1662 389 308 10 0 chr6 141243206 141243310 -8273727 + ID_B1 SINE B4 86 190 -34 4 1662 960 114 0 0 chr6 141244129 141244278 -8272759 + (TTTC)n Simple_repeat Simple_repeat 1 149 0 4 1662 203 174 65 0 chr6 141244551 141244597 -8272440 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 4 1662 187 231 0 0 chr6 141244669 141244708 -8272329 - L2b LINE L2 -8 3367 3329 4 1662 281 324 39 0 chr6 141244794 141244896 -8272141 + PB1D10 SINE Alu 3 108 -9 4 1662 1361 56 6 0 chr6 141245266 141245445 -8271592 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 4 1662 297 167 0 0 chr6 141245445 141245499 -8271538 + T-rich Low_complexity Low_complexity 1 54 0 4 1662 6615 73 22 1 chr6 141245823 141246689 -8270348 - L1_Mus1 LINE L1 0 6654 5657 4 1662 421 287 50 22 chr6 141246703 141246842 -8270195 - ID_B1 SINE B4 0 224 82 4 1662 216 0 0 0 chr6 141247405 141247429 -8269608 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1662 233 299 167 49 chr6 141247988 141248150 -8268887 + B3A SINE B2 2 182 -16 4 1662 270 132 0 0 chr6 141248150 141248203 -8268834 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1662 26 30 0 0 chr6 141248204 141248237 -8268800 + AT_rich Low_complexity Low_complexity 1 33 0 4 1662 390 320 0 0 chr6 141248338 141248435 -8268602 + PB1D7 SINE Alu 17 113 -7 4 1662 284 242 15 0 chr6 141248524 141248590 -8268447 - MTEb LTR MaLR 0 379 313 4 1662 294 73 0 0 chr6 141249038 141249079 -8267958 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1662 791 307 0 6 chr6 141249103 141249280 -8267757 - B3A SINE B2 -22 176 1 4 1662 869 301 63 52 chr6 141249856 141250203 -8266834 - ORR1E LTR MaLR 0 359 9 4 1662 211 111 28 0 chr6 141251212 141251248 -8265789 + (CCCCCA)n Simple_repeat Simple_repeat 3 39 0 4 1662 23 33 0 0 chr6 141252142 141252172 -8264865 + AT_rich Low_complexity Low_complexity 1 30 0 4 1662 31 44 0 0 chr6 141252195 141252240 -8264797 + AT_rich Low_complexity Low_complexity 1 45 0 4 1662 1208 62 0 0 chr6 141252313 141252457 -8264580 + B1_Mus1 SINE Alu 3 146 -2 4 1662 555 16 0 0 chr6 141252457 141252521 -8264516 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 4 1662 539 326 42 16 chr6 141252768 141252961 -8264076 - B3A SINE B2 0 198 1 4 1662 742 278 56 8 chr6 141255033 141255234 -8261803 + B3 SINE B2 2 194 -1 4 1662 29 0 0 0 chr6 141256266 141256295 -8260742 + AT_rich Low_complexity Low_complexity 1 29 0 4 1662 223 297 58 83 chr6 141256312 141256433 -8260604 - B1_Mur4 SINE Alu -1 149 32 4 1662 625 286 132 0 chr6 141256332 141256453 -8260584 - ID_B1 SINE B4 -3 221 76 4 1662 576 0 0 0 chr6 141256453 141256517 -8260520 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1662 625 286 132 0 chr6 141256517 141256584 -8260453 - ID SINE ID -149 75 9 4 1662 201 227 228 35 chr6 141256598 141256712 -8260325 + MIRc SINE MIR 64 199 -69 4 1662 585 324 120 39 chr6 141256986 141257420 -8259617 + L3 LINE CR1 3810 4278 -211 4 1662 261 0 0 0 chr6 141257492 141257521 -8259516 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 4 1662 757 235 99 0 chr6 141257527 141257689 -8259348 - B3 SINE B2 -38 178 1 4 1662 367 237 5 43 chr6 141257916 141258101 -8258936 + (TATG)n Simple_repeat Simple_repeat 1 178 0 4 1662 256 310 34 42 chr6 141258105 141258223 -8258814 - PB1D7 SINE Alu -1 119 3 4 1662 219 139 0 0 chr6 141259455 141259491 -8257546 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1662 489 229 0 0 chr6 141259545 141259702 -8257335 + (TG)n Simple_repeat Simple_repeat 2 158 0 4 1662 555 233 0 0 chr6 141259715 141259954 -8257083 + (TG)n Simple_repeat Simple_repeat 1 239 0 4 1662 325 310 118 8 chr6 141259996 141260139 -8256898 - B4 SINE B4 -105 187 30 4 1662 3215 60 0 0 chr6 141260774 141261156 -8255881 + L1_Mus1 LINE L1 6186 6567 0 4 1662 240 231 0 0 chr6 141261160 141261212 -8255825 + A-rich Low_complexity Low_complexity 1 52 0 4 1662 315 104 0 0 chr6 141261689 141261737 -8255300 - Lx LINE L1 -14 6640 6593 4 1662 699 309 76 65 chr6 141262434 141262711 -8254326 - B4A SINE B4 -12 280 1 4 1662 365 336 0 64 chr6 141262813 141262830 -8254207 + ID_B1 SINE B4 68 213 -11 4 1662 591 283 0 7 chr6 141262830 141262969 -8254068 + B1F1 SINE Alu 1 138 -11 4 1662 209 33 33 0 chr6 141262969 141262999 -8254038 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1662 312 152 0 0 chr6 141263116 141263182 -8253855 + T-rich Low_complexity Low_complexity 1 66 0 4 1662 1247 75 0 0 chr6 141263184 141263331 -8253706 - B1_Mm SINE Alu 0 147 1 4 1662 1689 174 104 26 chr6 141263823 141263991 -8253046 + ORR1D1 LTR MaLR 1 169 -205 4 1662 249 57 0 0 chr6 141263991 141264026 -8253011 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 4 1662 1689 174 104 26 chr6 141264026 141264204 -8252833 + ORR1D1 LTR MaLR 170 373 -1 4 1662 372 331 15 23 chr6 141264915 141265048 -8251989 - ID_B1 SINE B4 -11 213 82 4 1662 497 135 11 0 chr6 141265272 141265361 -8251676 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 4 1662 282 267 6 82 chr6 141265368 141265527 -8251510 + Lx9 LINE L1 7458 7604 -40 4 1662 192 111 0 0 chr6 141266099 141266135 -8250902 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1662 552 53 0 0 chr6 141266140 141266216 -8250821 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1662 1018 250 75 12 chr6 141266224 141266479 -8250558 - B4A SINE B4 -21 271 1 4 1662 245 329 13 0 chr6 141268115 141268194 -8248843 + CT-rich Low_complexity Low_complexity 2 81 0 4 1662 597 275 147 46 chr6 141268212 141268471 -8248566 - B4A SINE B4 -6 286 2 4 1662 349 108 43 71 chr6 141268962 141269032 -8248005 + PB1D10 SINE Alu 48 115 -2 4 1662 202 234 16 0 chr6 141269087 141269151 -8247886 + A-rich Low_complexity Low_complexity 2 66 0 4 1662 186 296 44 22 chr6 141269330 141269420 -8247617 - L2b LINE L2 -213 3162 3071 4 1662 241 321 62 54 chr6 141269788 141269900 -8247137 + ID_B1 SINE B4 2 114 -110 4 1662 369 0 0 0 chr6 141270089 141270130 -8246907 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1662 608 370 127 15 chr6 141271477 141272062 -8244975 + L2a LINE L2 2530 3175 -251 4 1662 405 141 0 0 chr6 141272177 141272248 -8244789 + (GGA)n Simple_repeat Simple_repeat 2 72 0 4 1662 336 205 63 19 chr6 141272965 141273124 -8243913 + (TCTA)n Simple_repeat Simple_repeat 1 166 0 4 1662 24 67 0 0 chr6 141273908 141273953 -8243084 + AT_rich Low_complexity Low_complexity 1 45 0 4 1662 932 18 9 0 chr6 141274008 141274121 -8242916 + B1_Mm SINE Alu 33 146 -1 4 1662 716 137 7 0 chr6 141275370 141275523 -8241514 + (GA)n Simple_repeat Simple_repeat 1 154 0 4 1662 1206 75 0 0 chr6 141275662 141275808 -8241229 - B1_Mus1 SINE Alu -2 146 1 4 1662 1341 20 0 0 chr6 141276165 141276311 -8240726 - B1_Mus2 SINE Alu -1 146 1 4 1662 2347 258 132 19 chr6 141276617 141277393 -8239644 - Lx8 LINE L1 -398 7075 6212 4 1662 185 182 0 83 chr6 141277898 141277946 -8239091 + L3 LINE CR1 910 953 -3536 4 1662 931 231 64 5 chr6 141278103 141278307 -8238730 + B3 SINE B2 1 216 0 4 1662 498 254 100 43 chr6 141278591 141278731 -8238306 - B1_Mur3 SINE Alu -1 148 1 4 1662 4559 159 77 43 chr6 141278751 141279617 -8237420 - RMER19B LTR ERVK -6 896 1 4 1662 21 36 0 0 chr6 141279622 141279650 -8237387 + AT_rich Low_complexity Low_complexity 1 28 0 4 1662 242 148 19 0 chr6 141279768 141279822 -8237215 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1662 1143 66 18 0 chr6 141281578 141281744 -8235293 + (TC)n Simple_repeat Simple_repeat 2 170 0 4 1662 364 263 6 14 chr6 141282197 141282323 -8234714 - ID2 SINE ID -22 130 5 4 1662 609 303 90 62 chr6 141282554 141282718 -8234319 - ID_B1 SINE B4 -7 217 47 4 1662 3795 31 0 0 chr6 141282718 141283138 -8233899 - L1Md_T LINE L1 0 6582 6163 4 1662 609 303 90 62 chr6 141283138 141283184 -8233853 - ID SINE ID -178 46 1 4 1662 23 0 0 0 chr6 141283868 141283891 -8233146 + AT_rich Low_complexity Low_complexity 1 23 0 4 1662 21 57 0 0 chr6 141284046 141284081 -8232956 + AT_rich Low_complexity Low_complexity 1 35 0 4 1662 491 107 12 0 chr6 141284231 141284315 -8232722 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 1662 305 303 138 0 chr6 141284319 141284428 -8232609 - RSINE1 SINE B4 -10 155 32 4 1662 378 206 43 110 chr6 141284414 141284578 -8232459 + ORR1A3-int LTR MaLR 654 806 -1157 4 1662 3311 105 23 0 chr6 141284432 141284916 -8232121 + MT2B2 LTR ERVL 90 584 0 4 1662 1265 302 45 63 chr6 141285941 141286479 -8230558 - Lx5 LINE L1 0 7050 6523 4 1662 535 212 10 0 chr6 141286541 141286640 -8230397 - B4A SINE B4 -191 101 2 4 1662 628 265 92 103 chr6 141286935 141287120 -8229917 + B3 SINE B2 2 184 -11 4 1662 580 286 25 17 chr6 141287813 141287980 -8229057 - ID_B1 SINE B4 -56 236 69 4 1662 781 142 0 26 chr6 141288417 141288569 -8228468 + G-rich Low_complexity Low_complexity 3 150 0 4 1662 342 0 0 0 chr6 141289394 141289432 -8227605 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 4 1662 857 294 0 0 chr6 141289439 141289636 -8227401 - ID_B1 SINE B4 -26 198 2 4 1662 356 302 26 20 chr6 141292386 141292538 -8224499 - L1ME2z LINE L1 -43 6401 6249 4 1662 708 304 0 30 chr6 141293055 141293255 -8223782 - B3A SINE B2 -3 195 2 4 1662 1120 217 19 9 chr6 141293330 141293544 -8223493 - B3 SINE B2 0 216 1 5 1662 1253 275 59 19 chr6 141294978 141295453 -8221584 - L1M3 LINE L1 -2241 3899 3406 5 207 664 321 15 11 chr6 141295443 141295714 -8221323 + L1_Rod LINE L1 5576 5847 0 5 1663 552 30 0 0 chr6 141297967 141298033 -8219004 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1663 23 0 0 0 chr6 141298267 141298290 -8218747 + AT_rich Low_complexity Low_complexity 1 23 0 5 1663 29 0 0 0 chr6 141298506 141298535 -8218502 + AT_rich Low_complexity Low_complexity 1 29 0 5 1663 532 332 77 10 chr6 141300131 141300326 -8216711 - ID_B1 SINE B4 -12 212 5 5 1663 468 0 0 0 chr6 141301144 141301196 -8215841 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1663 603 268 244 0 chr6 141301650 141301818 -8215219 + ID_B1 SINE B4 8 216 -8 5 1663 22 0 0 0 chr6 141302506 141302528 -8214509 + AT_rich Low_complexity Low_complexity 1 22 0 5 1663 689 202 23 8 chr6 141303138 141303268 -8213769 - B3A SINE B2 -47 151 20 5 1663 685 287 79 33 chr6 141303628 141303996 -8213041 - L1_Mur3 LINE L1 -11 5869 5471 5 1663 649 203 86 26 chr6 141303997 141304149 -8212888 - RLTR25B LTR ERVK -6 1097 937 5 1663 462 204 0 0 chr6 141304151 141304254 -8212783 + CT-rich Low_complexity Low_complexity 2 104 0 5 1663 39074 50 0 3 chr6 141304482 141311558 -8205479 - L1Md_T LINE L1 0 6585 1 5 1663 3552 198 37 74 chr6 141311576 141312292 -8204745 - RLTR25B LTR ERVK -166 862 157 5 1663 1888 158 124 78 chr6 141312292 141312718 -8204319 + RLTR41 LTR ERV1 1 446 0 5 1663 3552 198 37 74 chr6 141312718 141312896 -8204141 - RLTR25B LTR ERVK -872 156 1 5 1663 366 268 8 29 chr6 141312905 141313037 -8204000 - L1_Mur3 LINE L1 -423 5457 5354 5 1663 962 222 60 0 chr6 141313129 141313363 -8203674 + Lx5 LINE L1 6795 7042 -8 5 1663 287 273 140 35 chr6 141313774 141314002 -8203035 + L2a LINE L2 2337 2588 -831 5 1663 315 244 17 9 chr6 141314009 141314125 -8202912 + CT-rich Low_complexity Low_complexity 4 120 0 5 1663 201 133 67 0 chr6 141314137 141314182 -8202855 + CT-rich Low_complexity Low_complexity 5 52 0 5 1663 323 363 37 7 chr6 141314402 141314538 -8202499 - B4A SINE B4 -23 269 130 5 1663 236 329 98 0 chr6 141314643 141314786 -8202251 + L2a LINE L2 3265 3421 -5 5 1663 801 82 0 0 chr6 141314968 141315078 -8201959 + (TCCC)n Simple_repeat Simple_repeat 4 113 0 5 1663 1219 55 7 0 chr6 141315146 141315291 -8201746 - B1_Mus1 SINE Alu 0 148 3 5 1663 21 0 0 0 chr6 141316465 141316486 -8200551 + AT_rich Low_complexity Low_complexity 1 21 0 5 1663 1005 92 0 0 chr6 141316679 141316821 -8200216 + (TG)n Simple_repeat Simple_repeat 2 143 0 5 1663 1187 99 6 23 chr6 141317334 141317351 -8199686 - B2_Mm2 SINE B2 -21 174 158 5 1663 213 39 0 0 chr6 141317351 141317377 -8199660 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 5 1663 1218 63 6 0 chr6 141317377 141317535 -8199502 - B2_Mm1t SINE B2 -33 160 2 5 1663 740 120 28 22 chr6 141317726 141317905 -8199132 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 5 1663 1300 113 11 6 chr6 141318661 141318839 -8198198 - B2_Mm1t SINE B2 -14 179 1 5 1663 246 246 15 15 chr6 141319479 141319545 -8197492 + CT-rich Low_complexity Low_complexity 3 68 0 5 1663 331 272 0 0 chr6 141319730 141319811 -8197226 + MER3 DNA MER1_type 75 155 -54 5 1663 3092 251 48 61 chr6 141320083 141320942 -8196095 - Lx5 LINE L1 -3 7047 6196 5 1663 1620 0 0 0 chr6 141320942 141321122 -8195915 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 5 1663 1006 129 0 0 chr6 141321122 141321262 -8195775 - B1_Mus1 SINE Alu -7 141 2 5 1663 3092 251 48 61 chr6 141321262 141321318 -8195719 - Lx5 LINE L1 -855 6195 6144 5 1663 27 29 0 0 chr6 141321610 141321644 -8195393 + AT_rich Low_complexity Low_complexity 1 34 0 5 1663 382 257 131 34 chr6 141322065 141322266 -8194771 - L1MA5 LINE L1 -302 6001 5781 5 1663 1195 96 0 0 chr6 141322266 141322412 -8194625 - B1_Mus2 SINE Alu 0 147 2 5 1663 382 294 58 38 chr6 141322412 141322503 -8194534 - L1MA5 LINE L1 -520 5780 5696 5 1663 243 361 74 0 chr6 141324485 141324593 -8192444 + MER5A DNA MER1_type 37 152 -37 5 1663 183 146 0 0 chr6 141325083 141325124 -8191913 + (CAA)n Simple_repeat Simple_repeat 1 41 0 5 1663 897 263 29 24 chr6 141326072 141326282 -8190755 + B3 SINE B2 1 211 -5 5 1663 361 283 151 7 chr6 141327348 141327487 -8189550 + MIR SINE MIR 63 221 -41 5 1663 23 86 0 0 chr6 141327497 141327555 -8189482 + AT_rich Low_complexity Low_complexity 1 58 0 5 1663 910 249 37 11 chr6 141327562 141327749 -8189288 - B3A SINE B2 -6 192 1 5 1663 260 209 108 21 chr6 141329205 141329298 -8187739 - Lx8 LINE L1 -2 7471 7371 5 1663 648 0 0 0 chr6 141332653 141332725 -8184312 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 5 1663 3022 98 43 0 chr6 141332842 141333261 -8183776 - Lx2 LINE L1 -2 6995 6559 5 1663 563 106 154 0 chr6 141333628 141333732 -8183305 + Lx2 LINE L1 6559 6678 -319 5 1663 438 298 19 0 chr6 141333750 141333854 -8183183 - B3A SINE B2 -89 109 4 5 1663 895 208 30 0 chr6 141334271 141334439 -8182598 - B3A SINE B2 -23 175 3 5 1663 359 297 10 0 chr6 141335967 141336068 -8180969 + MTD LTR MaLR 14 115 -304 5 1663 720 0 0 0 chr6 141336068 141336148 -8180889 + (TTTC)n Simple_repeat Simple_repeat 1 80 0 5 1663 944 164 6 0 chr6 141336150 141336327 -8180710 + CT-rich Low_complexity Low_complexity 3 180 0 5 1663 1385 166 64 8 chr6 141336350 141336599 -8180438 + MTD LTR MaLR 157 419 0 5 1663 568 316 13 25 chr6 141336987 141337146 -8179891 + RSINE1 SINE B4 8 164 -1 5 1663 188 185 19 0 chr6 141337160 141337214 -8179823 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1663 444 288 69 89 chr6 141337304 141337506 -8179531 + B3A SINE B2 1 198 0 5 1663 477 304 76 44 chr6 141337660 141338395 -8178642 - L1MB8 LINE L1 -48 6130 5360 5 1663 236 172 0 17 chr6 141339175 141339234 -8177803 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1663 656 235 0 16 chr6 141340284 141340405 -8176632 - B1_Mur1 SINE Alu -25 124 6 5 1663 580 342 38 38 chr6 141340875 141341167 -8175870 + B4A SINE B4 1 292 0 5 1663 260 186 17 0 chr6 141341218 141341277 -8175760 + GA-rich Low_complexity Low_complexity 2 61 0 5 1663 338 344 24 24 chr6 141341277 141341402 -8175635 - RSINE1 SINE B4 -39 126 2 5 1663 476 32 16 0 chr6 141341774 141341836 -8175201 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1663 21 36 0 0 chr6 141342484 141342512 -8174525 + AT_rich Low_complexity Low_complexity 1 28 0 5 1663 261 128 0 0 chr6 141343928 141343975 -8173062 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 5 1663 1026 297 42 25 chr6 141345180 141345463 -8171574 + B4 SINE B4 5 292 0 5 1663 204 67 0 0 chr6 141346716 141346746 -8170291 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 5 1663 205 369 113 20 chr6 141346825 141347223 -8169814 + L2a LINE L2 2991 3425 -1 5 1663 219 36 0 0 chr6 141347238 141347266 -8169771 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1663 292 279 92 11 chr6 141347377 141347464 -8169573 + B1F1 SINE Alu 37 130 -19 5 1663 208 77 25 25 chr6 141348402 141348442 -8168595 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 5 1663 467 194 9 0 chr6 141348910 141349018 -8168019 + CT-rich Low_complexity Low_complexity 3 111 0 5 1663 22 0 0 0 chr6 141349372 141349394 -8167643 + AT_rich Low_complexity Low_complexity 1 22 0 5 1663 202 119 23 45 chr6 141349599 141349643 -8167394 + A-rich Low_complexity Low_complexity 2 44 0 5 1663 211 284 62 83 chr6 141349650 141349746 -8167291 + B3 SINE B2 2 95 -121 5 1663 228 158 0 0 chr6 141349746 141349803 -8167234 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1663 605 221 0 6 chr6 141349820 141349997 -8167040 + (CA)n Simple_repeat Simple_repeat 1 176 0 5 1663 348 271 66 58 chr6 141350021 141350158 -8166879 + B3 SINE B2 72 209 -7 5 1663 700 261 48 19 chr6 141351478 141351685 -8165352 - B3 SINE B2 0 216 4 5 1663 352 67 33 0 chr6 141351724 141351784 -8165253 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1663 231 121 34 17 chr6 141353030 141353089 -8163948 + T-rich Low_complexity Low_complexity 3 62 0 5 1663 254 264 196 18 chr6 141353090 141353202 -8163835 - ID_B1 SINE B4 0 224 93 5 1663 25 90 0 0 chr6 141354752 141354819 -8162218 + AT_rich Low_complexity Low_complexity 1 67 0 5 1663 718 243 31 77 chr6 141355163 141355359 -8161678 + B3A SINE B2 3 189 -9 5 1663 248 331 7 14 chr6 141355361 141355502 -8161535 + (CA)n Simple_repeat Simple_repeat 1 140 0 5 1663 576 251 64 12 chr6 141356553 141356726 -8160311 + B3A SINE B2 1 182 -16 5 1663 318 291 9 97 chr6 141358279 141358393 -8158644 + PB1D7 SINE Alu 9 112 -8 5 1663 604 261 52 28 chr6 141358518 141358762 -8158275 + B3 SINE B2 30 216 0 5 1663 24 67 0 0 chr6 141358769 141358814 -8158223 + AT_rich Low_complexity Low_complexity 1 45 0 5 1663 327 342 53 26 chr6 141358832 141358946 -8158091 + RSINE1 SINE B4 4 120 -45 5 1663 22 35 0 0 chr6 141361593 141361622 -8155415 + AT_rich Low_complexity Low_complexity 1 29 0 5 1663 189 0 0 0 chr6 141361660 141361681 -8155356 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1663 226 272 24 24 chr6 141361692 141361775 -8155262 + B4A SINE B4 2 84 -208 5 1663 423 0 0 0 chr6 141361978 141362025 -8155012 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1663 210 226 48 0 chr6 141362061 141362123 -8154914 + (TATG)n Simple_repeat Simple_repeat 1 65 0 5 1663 239 368 70 38 chr6 141362534 141362608 -8154429 + B4 SINE B4 7 85 -207 5 1663 370 301 0 0 chr6 141362608 141362708 -8154329 + B1F2 SINE Alu 1 100 -49 5 1663 697 199 12 0 chr6 141364931 141365102 -8151935 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 5 1663 456 211 156 25 chr6 141365785 141365945 -8151092 + B3A SINE B2 2 182 -16 5 1663 619 299 26 7 chr6 141366324 141366479 -8150558 - B3A SINE B2 -38 160 3 5 1663 348 288 164 67 chr6 141367110 141367244 -8149793 - B1F SINE Alu -2 147 1 5 1663 457 284 81 14 chr6 141367450 141367625 -8149412 + B3A SINE B2 4 183 -12 5 1663 21 36 0 0 chr6 141368257 141368285 -8148752 + AT_rich Low_complexity Low_complexity 1 28 0 5 1663 30 45 0 0 chr6 141368414 141368458 -8148579 + AT_rich Low_complexity Low_complexity 1 44 0 6 1663 25 31 0 0 chr6 141368532 141368564 -8148473 + AT_rich Low_complexity Low_complexity 1 32 0 6 1663 689 144 38 23 chr6 141368668 141368931 -8148106 + (TCTA)n Simple_repeat Simple_repeat 1 266 0 6 1663 261 139 0 0 chr6 141368943 141368986 -8148051 + (CCA)n Simple_repeat Simple_repeat 1 43 0 6 1663 502 271 7 44 chr6 141369154 141369289 -8147748 + ID_B1 SINE B4 87 216 -8 6 1663 305 0 50 0 chr6 141370090 141370130 -8146907 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 6 1663 752 110 18 0 chr6 141370130 141370239 -8146798 - PB1D9 SINE Alu -9 111 1 6 1663 611 167 0 44 chr6 141370460 141370573 -8146464 - RLTR31B_Mm LTR ERVK 0 557 450 6 1663 469 184 18 0 chr6 141370573 141370682 -8146355 + (CATA)n Simple_repeat Simple_repeat 1 111 0 6 1663 872 294 56 16 chr6 141371390 141371633 -8145404 + ID_B1 SINE B4 2 256 -36 6 1663 713 282 108 22 chr6 141372659 141372927 -8144110 + B4 SINE B4 1 291 -1 6 1663 774 252 104 81 chr6 141373090 141373436 -8143601 - ORR1E LTR MaLR -5 354 1 6 1663 794 294 69 12 chr6 141373589 141373923 -8143114 - MLT1C LTR MaLR -95 372 20 6 1663 931 307 109 10 chr6 141374529 141374822 -8142215 - MTEb LTR MaLR -57 322 1 6 1663 342 0 0 0 chr6 141374937 141374975 -8142062 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1663 258 354 0 0 chr6 141375036 141375118 -8141919 - ID4_ SINE ID 0 83 2 6 1663 643 295 61 20 chr6 141375432 141375629 -8141408 + ID_B1 SINE B4 13 217 -7 6 1663 513 104 0 0 chr6 141375646 141375723 -8141314 + (CA)n Simple_repeat Simple_repeat 2 78 0 6 1663 903 243 104 121 chr6 141375736 141376148 -8140889 - MTD LTR MaLR -14 405 1 6 1663 213 294 0 12 chr6 141376148 141376234 -8140803 + (TA)n Simple_repeat Simple_repeat 1 85 0 6 1663 441 235 0 10 chr6 141376567 141376670 -8140367 + MLT1A1 LTR MaLR 299 400 -8 6 1663 723 280 29 5 chr6 141378725 141378933 -8138104 + B3 SINE B2 1 213 -3 6 1663 376 308 0 19 chr6 141379564 141379670 -8137367 + MIR SINE MIR 12 115 -147 6 1663 2408 83 9 3 chr6 141380191 141380516 -8136521 - ORR1A2 LTR MaLR 0 327 1 6 1663 246 287 139 67 chr6 141381337 141381547 -8135490 - L2c LINE L2 -53 3322 3098 6 1663 599 179 0 21 chr6 141381760 141381857 -8135180 + B3A SINE B2 57 151 -47 6 1663 561 88 0 0 chr6 141381859 141381939 -8135098 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 1663 27 29 0 0 chr6 141382432 141382466 -8134571 + AT_rich Low_complexity Low_complexity 1 34 0 6 1663 949 266 53 64 chr6 141383971 141384252 -8132785 + B4 SINE B4 12 289 -3 6 1663 620 264 0 0 chr6 141384488 141384609 -8132428 - B1F SINE Alu -27 122 2 6 1663 328 324 0 0 chr6 141385222 141385330 -8131707 - L1MA6 LINE L1 -68 6232 6125 6 1663 3114 40 0 0 chr6 141385338 141385712 -8131325 - L1Md_T LINE L1 -3 6579 6206 6 1663 1260 263 45 49 chr6 141387593 141388012 -8129025 - ORR1E LTR MaLR -1 369 2 6 1663 209 139 0 44 chr6 141388527 141388572 -8128465 + GA-rich Low_complexity Low_complexity 1 43 0 6 1663 574 268 7 48 chr6 141389762 141389907 -8127130 + RSINE1 SINE B4 6 144 -21 6 1663 1229 279 62 83 chr6 141389966 141390353 -8126684 + MTE2b LTR MaLR 1 379 0 6 1663 1112 276 42 45 chr6 141390353 141390682 -8126355 + ORR1D2 LTR MaLR 43 370 0 6 1663 21 0 0 0 chr6 141391695 141391716 -8125321 + AT_rich Low_complexity Low_complexity 1 21 0 6 1663 381 183 9 19 chr6 141391858 141391964 -8125073 + CT-rich Low_complexity Low_complexity 2 106 0 6 1663 254 278 214 17 chr6 141391971 141392088 -8124949 - B1F SINE Alu -8 141 2 6 1663 383 203 25 17 chr6 141392611 141392731 -8124306 + GA-rich Low_complexity Low_complexity 2 122 0 6 1663 1500 254 31 6 chr6 141393338 141393691 -8123346 - ORR1D2 LTR MaLR -6 364 3 6 1663 27 29 0 0 chr6 141393980 141394014 -8123023 + AT_rich Low_complexity Low_complexity 1 34 0 6 1663 237 65 0 0 chr6 141394431 141394462 -8122575 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1663 348 24 0 0 chr6 141395199 141395240 -8121797 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1663 420 82 0 0 chr6 141395733 141395794 -8121243 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1663 670 264 42 52 chr6 141397988 141398200 -8118837 + B3A SINE B2 3 212 -4 6 1663 27 29 0 0 chr6 141398956 141398990 -8118047 + AT_rich Low_complexity Low_complexity 1 34 0 6 1663 438 20 0 0 chr6 141399070 141399121 -8117916 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1663 1430 237 22 59 chr6 141399165 141399573 -8117464 - Lx9 LINE L1 -439 7205 6813 6 1663 201 195 0 0 chr6 141399573 141399614 -8117423 + C-rich Low_complexity Low_complexity 6 46 0 6 1663 305 302 12 0 chr6 141399661 141399747 -8117290 - Lx9 LINE L1 -927 6717 6631 6 1663 540 359 78 46 chr6 141399869 141400494 -8116543 - Tigger13a DNA MER2_type -5 766 122 6 1663 206 250 0 0 chr6 141400912 141400960 -8116077 + (CATA)n Simple_repeat Simple_repeat 4 51 0 6 1663 267 224 43 67 chr6 141402168 141402378 -8114659 - RMER17D LTR ERVK -368 521 317 6 1663 371 295 118 44 chr6 141402393 141402528 -8114509 - ORR1E LTR MaLR -189 170 26 6 1663 618 206 81 0 chr6 141402737 141402873 -8114164 + B1_Mur2 SINE Alu 1 147 -2 6 1663 336 202 0 35 chr6 141402882 141402995 -8114042 + G-rich Low_complexity Low_complexity 4 112 0 6 1663 486 88 0 0 chr6 141404407 141404475 -8112562 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 6 1663 2299 121 48 0 chr6 141404543 141404916 -8112121 + L1_Mm LINE L1 5253 5643 -240 6 1663 4098 136 24 2 chr6 141405091 141405726 -8111311 - RMER19A LTR ERVK 0 737 89 6 1663 924 249 9 53 chr6 141406795 141406849 -8110188 - B3 SINE B2 0 216 172 6 1663 872 151 250 6 chr6 141406849 141407029 -8110008 + URR1A DNA MER1_type 1 224 -2 6 1663 924 249 9 53 chr6 141407029 141407199 -8109838 - B3 SINE B2 -45 171 2 6 1663 245 312 86 86 chr6 141407381 141407486 -8109551 - PB1D10 SINE Alu -11 106 2 6 1663 254 278 146 65 chr6 141407913 141408036 -8109001 - B1_Mur2 SINE Alu -8 141 9 6 1663 225 182 23 0 chr6 141408806 141408850 -8108187 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1663 495 232 21 18 chr6 141408853 141409201 -8107836 + (TATG)n Simple_repeat Simple_repeat 1 349 0 6 1663 339 25 0 0 chr6 141409829 141409869 -8107168 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1663 648 308 30 39 chr6 141410799 141411032 -8106005 - ORR1E LTR MaLR -125 234 4 6 1663 405 0 0 0 chr6 141411254 141411299 -8105738 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1663 201 74 0 0 chr6 141411758 141411785 -8105252 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 6 1663 388 195 0 65 chr6 141411857 141411950 -8105087 + PB1D9 SINE Alu 33 119 -1 6 1663 23 0 0 0 chr6 141412657 141412680 -8104357 + AT_rich Low_complexity Low_complexity 1 23 0 6 1663 804 267 15 19 chr6 141412800 141413006 -8104031 - B3 SINE B2 -3 213 9 6 1663 336 315 15 8 chr6 141413606 141413737 -8103300 - LTR80B LTR ERVL -267 317 186 6 1663 243 290 46 46 chr6 141414010 141414140 -8102897 - LTR80B LTR ERVL -288 296 167 6 1663 339 44 0 0 chr6 141414309 141414354 -8102683 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 6 1663 232 378 14 0 chr6 141414930 141415004 -8102033 + PB1D10 SINE Alu 1 75 -42 6 1663 653 274 46 52 chr6 141415007 141415180 -8101857 + B3A SINE B2 1 172 -26 6 1663 234 150 0 0 chr6 141415186 141415226 -8101811 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1663 731 269 21 8 chr6 141415838 141416040 -8100997 - B3A SINE B2 0 216 10 6 1663 486 0 0 0 chr6 141416249 141416303 -8100734 + (TATG)n Simple_repeat Simple_repeat 1 54 0 6 1663 25 51 0 0 chr6 141416395 141416434 -8100603 + AT_rich Low_complexity Low_complexity 1 39 0 6 1663 208 70 93 0 chr6 141416655 141416698 -8100339 + T-rich Low_complexity Low_complexity 4 50 0 6 1663 775 299 48 41 chr6 141417474 141417764 -8099273 + B4A SINE B4 1 292 0 6 1663 495 0 0 0 chr6 141417840 141417895 -8099142 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 6 1663 437 200 0 0 chr6 141417895 141417970 -8099067 - B1_Mur4 SINE Alu -10 140 66 6 1663 861 266 25 0 chr6 141418836 141419039 -8097998 + B3 SINE B2 9 216 0 6 1663 590 283 31 20 chr6 141419881 141420076 -8096961 + B3A SINE B2 2 198 0 6 1663 36 0 0 0 chr6 141420078 141420114 -8096923 + AT_rich Low_complexity Low_complexity 1 36 0 6 1663 440 155 153 12 chr6 141420355 141420440 -8096597 + B1F SINE Alu 18 114 -35 6 1663 359 248 176 10 chr6 141420440 141420457 -8096580 + ID_B1 SINE B4 99 217 -7 6 1663 185 200 0 39 chr6 141420457 141420509 -8096528 + GA-rich Low_complexity Low_complexity 1 50 0 6 1663 21 0 0 0 chr6 141420681 141420702 -8096335 + AT_rich Low_complexity Low_complexity 1 21 0 6 1663 912 43 0 0 chr6 141420745 141420862 -8096175 + (TG)n Simple_repeat Simple_repeat 2 118 0 6 1663 724 211 33 20 chr6 141420862 141421012 -8096025 - B3 SINE B2 -64 152 1 6 1663 7264 36 8 9 chr6 141421490 141422433 -8094604 - L1Md_F3 LINE L1 -1 6583 5642 6 1663 896 113 0 0 chr6 141422416 141422549 -8094488 + L1Md_F LINE L1 390 522 -5997 6 1663 651 60 0 0 chr6 141423152 141423236 -8093801 + (GA)n Simple_repeat Simple_repeat 2 85 0 6 1663 201 175 0 0 chr6 141423492 141423532 -8093505 + T-rich Low_complexity Low_complexity 1 40 0 6 1663 189 0 0 0 chr6 141423938 141423959 -8093078 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1663 567 243 67 108 chr6 141425470 141425664 -8091373 - B3A SINE B2 -9 186 1 7 1663 459 0 0 0 chr6 141425849 141425900 -8091137 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 7 1663 270 319 21 21 chr6 141426075 141426168 -8090869 + MIR SINE MIR 99 191 -71 7 1663 716 233 65 56 chr6 141426178 141426392 -8090645 + B3 SINE B2 1 216 0 7 1664 258 264 54 27 chr6 141427282 141427356 -8089681 + ID4 SINE ID 4 79 -4 7 1664 330 102 102 0 chr6 141427356 141427474 -8089563 + GA-rich Low_complexity Low_complexity 1 130 0 7 1664 625 310 0 7 chr6 141427568 141427714 -8089323 + B3A SINE B2 1 145 -53 7 1664 249 83 0 0 chr6 141428215 141428251 -8088786 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1664 910 248 104 16 chr6 141428286 141428536 -8088501 - B4 SINE B4 -20 272 1 7 1664 1335 150 23 12 chr6 141430028 141430337 -8086700 - Lx4A LINE L1 -1 7057 6710 7 1664 373 288 3 0 chr6 141430824 141430924 -8086113 + B3A SINE B2 15 115 -101 7 1664 803 237 72 0 chr6 141430985 141431179 -8085858 - B3 SINE B2 -5 211 4 7 1664 576 265 0 77 chr6 141431380 141431523 -8085514 + B1_Mur1 SINE Alu 2 133 -16 7 1664 222 37 0 0 chr6 141431523 141431550 -8085487 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7 1664 362 337 74 32 chr6 141431626 141431816 -8085221 + MIR SINE MIR 13 210 -52 7 1664 332 294 10 10 chr6 141431948 141432051 -8084986 - B1F SINE Alu -46 103 1 7 1664 496 286 72 39 chr6 141433462 141433669 -8083368 + ID_B1 SINE B4 3 216 -8 7 1664 569 264 25 12 chr6 141434555 141434716 -8082321 + RSINE1 SINE B4 3 165 0 7 1664 333 0 0 0 chr6 141435312 141435349 -8081688 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1664 1203 81 0 0 chr6 141435536 141435709 -8081328 + (TC)n Simple_repeat Simple_repeat 1 173 0 7 1664 268 201 83 0 chr6 141436986 141437130 -8079907 + (TA)n Simple_repeat Simple_repeat 1 156 0 7 1664 436 248 152 112 chr6 141437891 141438168 -8078869 + B4 SINE B4 5 292 0 7 1664 567 208 18 12 chr6 141438195 141438365 -8078672 + (CATA)n Simple_repeat Simple_repeat 4 174 0 7 1664 221 211 53 66 chr6 141439677 141439753 -8077284 + B1F SINE Alu 6 80 -69 7 1664 233 343 121 0 chr6 141440311 141440410 -8076627 + B4A SINE B4 8 118 -174 7 1664 611 279 168 48 chr6 141442036 141442403 -8074634 - MTE2b LTR MaLR 0 379 1 7 1664 267 262 164 83 chr6 141442589 141442785 -8074252 - B4A SINE B4 -72 220 3 7 1664 777 284 95 34 chr6 141443480 141443743 -8073294 - B4A SINE B4 -13 279 1 7 1664 181 30 0 83 chr6 141444047 141444083 -8072954 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 7 1664 455 277 32 102 chr6 141444660 141444817 -8072220 + B3 SINE B2 59 204 -12 7 1664 648 232 114 12 chr6 141444993 141445159 -8071878 - MTEa LTR MaLR -195 184 2 7 1664 375 78 0 0 chr6 141445460 141445511 -8071526 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 7 1664 489 287 72 58 chr6 141445661 141445868 -8071169 - MER67D LTR ERV1 -284 230 21 7 1664 1240 244 63 38 chr6 141445871 141446237 -8070800 - MTE2a LTR MaLR 0 379 5 7 1664 200 270 0 45 chr6 141446292 141446358 -8070679 + L2c LINE L2 3268 3330 -57 7 1664 201 108 0 0 chr6 141447962 141447999 -8069038 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 1664 1149 70 0 0 chr6 141452596 141452739 -8064298 - B1_Mm SINE Alu 0 147 5 7 1664 645 221 36 14 chr6 141452803 141452941 -8064096 + B3 SINE B2 70 210 -6 7 1664 183 225 81 81 chr6 141453009 141453096 -8063941 - L3 LINE CR1 -1095 3394 3308 7 1664 244 167 0 18 chr6 141453535 141453590 -8063447 + A-rich Low_complexity Low_complexity 2 55 0 7 1664 8412 246 90 20 chr6 141457141 141457739 -8059298 + L1_Rod LINE L1 900 1530 -4317 7 1664 1142 58 0 0 chr6 141457739 141457877 -8059160 + B1_Mus2 SINE Alu 5 142 -5 7 1664 369 0 0 0 chr6 141457880 141457921 -8059116 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 7 1664 8412 228 96 32 chr6 141457921 141459881 -8057156 + L1_Rod LINE L1 1531 3657 -2190 7 1664 333 0 0 0 chr6 141459881 141459918 -8057119 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1664 8412 228 96 32 chr6 141459918 141460641 -8056396 + L1_Rod LINE L1 3658 4414 -1433 7 1664 2253 134 10 20 chr6 141460715 141461111 -8055926 - Lx4A LINE L1 -653 6405 6014 7 1664 881 54 0 0 chr6 141461112 141461224 -8055813 - B1_Mus1 SINE Alu -2 146 35 7 1664 1273 93 74 0 chr6 141461224 141461439 -8055598 - Lx4A LINE L1 -1033 6025 5795 7 1664 3057 151 86 21 chr6 141461437 141462045 -8054992 + Lx4A LINE L1 6412 7058 0 7 1664 1055 212 24 124 chr6 141462082 141462583 -8054454 + L1_Rod LINE L1 4457 4907 -940 7 1664 22 0 0 0 chr6 141462760 141462782 -8054255 + AT_rich Low_complexity Low_complexity 1 22 0 7 1664 412 215 0 0 chr6 141463319 141463398 -8053639 - B3A SINE B2 -115 83 5 7 1664 21 0 0 0 chr6 141463701 141463722 -8053315 + AT_rich Low_complexity Low_complexity 1 21 0 7 1664 1342 169 4 4 chr6 141464193 141464419 -8052618 + RMER13A LTR ERVK 1 226 -634 7 1664 1323 288 63 49 chr6 141464503 141465182 -8051855 - Lx9 LINE L1 -9 7635 6947 7 1664 22 80 0 0 chr6 141465306 141465356 -8051681 + AT_rich Low_complexity Low_complexity 1 50 0 7 1664 568 0 28 0 chr6 141465442 141465514 -8051523 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 7 1664 1293 295 34 2 chr6 141465527 141466089 -8050948 + Lx9 LINE L1 6225 6966 -678 7 1664 1883 151 129 11 chr6 141466562 141466910 -8050127 - ORR1B1 LTR MaLR 0 394 6 7 1664 580 259 51 14 chr6 141466966 141467152 -8049885 + ORR1D2 LTR MaLR 177 378 0 7 1664 224 349 51 107 chr6 141467237 141467433 -8049604 - L2 LINE L2 -1256 2163 1979 7 1664 415 377 113 33 chr6 141467512 141467962 -8049075 - L2 LINE L2 -1782 1637 1152 7 1664 2082 169 79 3 chr6 141469007 141469398 -8047639 + MTC LTR MaLR 1 421 0 7 1664 560 138 31 0 chr6 141469419 141469549 -8047488 + GA-rich Low_complexity Low_complexity 2 135 0 7 1664 1960 244 97 2 chr6 141469689 141470226 -8046811 - RCHARR1 DNA MER1_type 0 974 382 7 1664 198 0 0 0 chr6 141470226 141470248 -8046789 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1664 1960 244 97 2 chr6 141470248 141470289 -8046748 - RCHARR1 DNA MER1_type -593 381 341 7 1664 531 74 0 0 chr6 141470717 141470798 -8046239 + (CATA)n Simple_repeat Simple_repeat 2 82 0 7 1664 1146 288 32 6 chr6 141470798 141471140 -8045897 - RCHARR1 DNA MER1_type -618 356 6 7 1664 615 27 0 0 chr6 141471560 141471633 -8045404 + (TTTTG)n Simple_repeat Simple_repeat 4 76 0 7 1664 283 299 52 0 chr6 141471645 141471722 -8045315 - B1_Mur3 SINE Alu -67 82 2 7 1664 656 230 96 10 chr6 141471819 141472017 -8045020 + B3 SINE B2 2 216 0 7 1664 22 0 0 0 chr6 141472617 141472639 -8044398 + AT_rich Low_complexity Low_complexity 1 22 0 7 1664 1170 86 0 9 chr6 141473285 141473508 -8043529 + (TCTA)n Simple_repeat Simple_repeat 1 221 0 7 1664 234 409 61 6 chr6 141473687 141473852 -8043185 + MIRb SINE MIR 50 223 -45 7 1664 27 0 0 0 chr6 141474216 141474243 -8042794 + AT_rich Low_complexity Low_complexity 1 27 0 7 1664 180 0 0 0 chr6 141474967 141474987 -8042050 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7 1664 1046 58 0 42 chr6 141474987 141475131 -8041906 - B1_Mus1 SINE Alu -9 139 2 7 1664 24 53 0 0 chr6 141475366 141475404 -8041633 + AT_rich Low_complexity Low_complexity 1 38 0 7 1664 3545 206 73 30 chr6 141477167 141478098 -8038939 - Lx2B LINE L1 -4 6996 6026 7 1664 3292 137 126 1 chr6 141478103 141478803 -8038234 + MusHAL1 LINE L1 1221 2007 -705 7 1664 180 111 0 0 chr6 141480200 141480227 -8036810 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 7 1664 1188 123 12 2 chr6 141481702 141481892 -8035145 + B2_Mm2 SINE B2 1 203 -13 7 1664 252 0 0 0 chr6 141481911 141481939 -8035098 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 1664 1194 292 78 19 chr6 141482408 141482872 -8034165 - RMER5 LTR ERV1 -7 527 37 7 1664 23 0 0 0 chr6 141483035 141483058 -8033979 + AT_rich Low_complexity Low_complexity 1 23 0 7 1664 656 267 20 0 chr6 141483085 141483231 -8033806 - RSINE1 SINE B4 -6 159 11 7 1664 1834 157 63 9 chr6 141483319 141483666 -8033371 - ORR1B2 LTR MaLR 0 367 2 7 1664 235 337 0 19 chr6 141484024 141484127 -8032910 + (CA)n Simple_repeat Simple_repeat 2 102 0 7 1664 41 21 0 0 chr6 141484430 141484478 -8032559 + AT_rich Low_complexity Low_complexity 1 48 0 7 1664 652 245 0 14 chr6 141484565 141484710 -8032327 - B1_Mur1 SINE Alu -6 143 1 7 1664 374 100 17 0 chr6 141485144 141485204 -8031833 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1664 767 307 80 40 chr6 141485225 141485500 -8031537 - B4A SINE B4 -2 290 5 7 1664 454 320 159 44 chr6 141486401 141486653 -8030384 + B4 SINE B4 2 282 -10 7 1664 387 127 0 0 chr6 141486669 141486732 -8030305 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1664 737 270 5 15 chr6 141487213 141487412 -8029625 - B3A SINE B2 0 198 2 7 1664 261 0 0 0 chr6 141488027 141488056 -8028981 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1664 886 303 5 9 chr6 141488843 141489053 -8027984 + B4A SINE B4 6 214 -78 7 1664 367 273 22 104 chr6 141489217 141489352 -8027685 + B1F1 SINE Alu 16 139 -10 7 1664 678 13 0 0 chr6 141489488 141489567 -8027470 + (CA)n Simple_repeat Simple_repeat 1 79 0 7 1664 180 0 0 0 chr6 141490290 141490310 -8026727 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1664 372 182 0 0 chr6 141491012 141491100 -8025937 + (TG)n Simple_repeat Simple_repeat 2 89 0 7 1664 4411 78 3 11 chr6 141492456 141493063 -8023974 + L1_Mus3 LINE L1 6037 6638 0 7 1664 620 277 20 0 chr6 141493396 141493544 -8023493 - RSINE1 SINE B4 -10 155 5 7 1664 701 235 85 5 chr6 141493640 141493828 -8023209 - B3 SINE B2 -13 203 1 7 1664 277 375 0 12 chr6 141494550 141494658 -8022379 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 7 1664 180 111 0 0 chr6 141494658 141494685 -8022352 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1664 291 348 0 17 chr6 141494685 141494808 -8022229 + (TATG)n Simple_repeat Simple_repeat 1 120 0 8 1664 557 339 25 33 chr6 141494856 141495097 -8021940 - B4A SINE B4 -8 284 46 8 1664 428 284 13 141 chr6 141497255 141497326 -8019711 - B3A SINE B2 -16 182 122 8 1664 353 209 432 0 chr6 141497326 141497474 -8019563 + B3 SINE B2 2 213 -3 8 1664 428 284 13 141 chr6 141497474 141497558 -8019479 - B3A SINE B2 -77 121 47 8 1664 234 268 13 66 chr6 141499382 141499458 -8017579 + RSINE1 SINE B4 3 74 -91 8 1664 2542 213 26 6 chr6 141499481 141499976 -8017061 + RLTR18B LTR ERVK 1 505 -7 8 1664 307 223 0 43 chr6 141500089 141500206 -8016831 + (TA)n Simple_repeat Simple_repeat 1 112 0 1 1664 845 269 94 0 chr6 141500208 141500464 -8016573 - Lx LINE L1 -146 7327 7048 2 1664 962 248 45 38 chr6 141500544 141500792 -8016245 - ORR1D2 LTR MaLR 0 370 119 3 1664 821 10 10 0 chr6 141500792 141500890 -8016147 + (GA)n Simple_repeat Simple_repeat 1 99 0 4 1664 962 248 45 38 chr6 141500890 141500905 -8016132 - ORR1D2 LTR MaLR -252 118 106 3 1664 188 333 59 47 chr6 141502192 141502277 -8014760 - MIR SINE MIR -163 99 14 5 1664 3282 44 5 7 chr6 141502300 141502711 -8014326 - L1Md_F3 LINE L1 -3 6581 6172 6 1664 246 339 9 35 chr6 141502907 141503023 -8014014 + MIRb SINE MIR 139 251 -17 7 1664 475 233 0 87 chr6 141504660 141504674 -8012363 - ORR1E LTR MaLR -12 367 356 8 1664 2020 192 21 7 chr6 141504674 141505093 -8011944 - Lx LINE L1 -5 6649 6225 2 1664 711 282 38 90 chr6 141505093 141505433 -8011604 - ORR1E LTR MaLR -24 355 13 8 1664 349 305 115 49 chr6 141506108 141506291 -8010746 - MARNA DNA Mariner -78 508 314 9 1664 205 314 32 75 chr6 141506642 141506784 -8010253 + MIR SINE MIR 8 150 -58 1 1664 332 260 5 0 chr6 141507147 141507230 -8009807 + PB1D10 SINE Alu 19 104 -16 1 1664 2206 155 85 22 chr6 141509081 141509491 -8007546 - RMER19B LTR ERVK -466 436 1 1 1664 238 263 182 13 chr6 141509504 141509581 -8007456 - MLT1A0 LTR MaLR -212 153 64 1 1664 480 301 59 54 chr6 141509876 141510097 -8006940 - RMER12 LTR ERVK 0 1322 1101 1 1664 1854 149 24 30 chr6 141510116 141510449 -8006588 - RLTR22_Mur LTR ERVK -1517 331 1 1 1664 459 0 0 0 chr6 141510490 141510541 -8006496 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1664 318 79 15 31 chr6 141511771 141511836 -8005201 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1664 728 10 48 0 chr6 141511838 141511942 -8005095 + (TCTA)n Simple_repeat Simple_repeat 2 110 0 1 1664 22 35 0 0 chr6 141512461 141512490 -8004547 + AT_rich Low_complexity Low_complexity 1 29 0 1 1664 340 326 65 0 chr6 141512720 141512858 -8004179 - B4 SINE B4 -37 255 109 2 1664 554 41 14 0 chr6 141512877 141512950 -8004087 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 2 1664 639 0 0 0 chr6 141513145 141513216 -8003821 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1664 541 325 78 59 chr6 141513236 141513556 -8003481 - RLTR18B LTR ERVK -4 508 183 2 1664 306 330 71 58 chr6 141513631 141513856 -8003181 - RLTR18 LTR ERVK -350 266 39 2 1664 694 230 15 0 chr6 141514239 141514374 -8002663 - B1_Mur3 SINE Alu -10 139 3 2 1664 493 278 103 80 chr6 141514525 141514814 -8002223 + ORR1E LTR MaLR 3 327 -52 2 1664 234 81 0 0 chr6 141514842 141514879 -8002158 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1664 273 206 13 76 chr6 141515521 141515600 -8001437 - tRNA-Ala-GCY_ tRNA tRNA -1 74 1 2 1664 222 398 34 114 chr6 141516399 141516433 -8000604 + B4 SINE B4 54 215 -77 2 1664 502 263 35 63 chr6 141516433 141516575 -8000462 + B1F SINE Alu 1 138 -11 3 1664 396 0 0 0 chr6 141516577 141516621 -8000416 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1664 360 229 71 32 chr6 141517455 141517581 -7999456 - MER94 DNA AcHobo -1 133 3 3 1664 21 36 0 0 chr6 141518213 141518241 -7998796 + AT_rich Low_complexity Low_complexity 1 28 0 3 1664 1133 76 7 0 chr6 141518717 141518862 -7998175 - B1_Mus1 SINE Alu 0 148 3 3 1664 370 223 0 11 chr6 141518892 141518987 -7998050 + RMER1C Other Other 1246 1339 -3 3 1664 1530 215 107 6 chr6 141519166 141519494 -7997543 + MTD LTR MaLR 1 361 -58 3 1664 4498 66 2 13 chr6 141519507 141520105 -7996932 - L1Md_F2 LINE L1 -2 6580 5990 3 1664 439 322 23 34 chr6 141521101 141521278 -7995759 + B3A SINE B2 5 179 -19 3 1664 405 0 0 0 chr6 141521279 141521324 -7995713 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1664 537 253 122 53 chr6 141521686 141521841 -7995196 + Lx9 LINE L1 7315 7487 -157 4 1664 387 0 0 0 chr6 141521841 141521884 -7995153 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1664 537 253 122 53 chr6 141521884 141522032 -7995005 + Lx9 LINE L1 7488 7638 -6 4 1664 402 295 334 12 chr6 141522790 141522950 -7994087 + ID_B1 SINE B4 12 223 -1 4 1664 241 321 23 35 chr6 141522950 141523037 -7994000 - MIRb SINE MIR -134 134 49 4 1664 797 241 28 24 chr6 141523236 141523448 -7993589 - B3 SINE B2 -3 213 1 4 1664 207 0 0 0 chr6 141523959 141523982 -7993055 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 1664 225 211 0 0 chr6 141525298 141525350 -7991687 + A-rich Low_complexity Low_complexity 1 52 0 4 1664 357 312 21 14 chr6 141525646 141525859 -7991178 - RMER15 LTR ERVL -23 552 293 4 1664 696 56 0 0 chr6 141526205 141526294 -7990743 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 4 1664 36322 43 0 3 chr6 141526554 141533003 -7984034 - L1Md_T LINE L1 0 6585 56 4 1664 2149 112 9 61 chr6 141533041 141533385 -7983652 + ORR1A3 LTR MaLR 1 326 0 5 1664 423 0 0 0 chr6 141533661 141533708 -7983329 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1664 204 97 0 0 chr6 141534903 141534934 -7982103 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 1664 260 361 68 19 chr6 141535105 141535266 -7981771 - Lx8 LINE L1 -1094 6379 6211 5 1664 508 26 0 50 chr6 141535275 141535355 -7981682 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 5 1664 716 268 129 69 chr6 141535410 141535759 -7981278 + ORR1D2 LTR MaLR 1 370 0 5 1664 468 0 0 0 chr6 141535873 141535925 -7981112 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 5 1664 3826 183 37 4 chr6 141535925 141536306 -7980731 + MERVK26-int LTR ERVK 680 1079 -5840 5 1664 216 0 0 0 chr6 141536306 141536330 -7980707 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 1664 3826 180 124 6 chr6 141536330 141536880 -7980157 + MERVK26-int LTR ERVK 1080 1706 -5213 5 1664 441 0 0 0 chr6 141536880 141536929 -7980108 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1664 384 22 0 0 chr6 141536929 141536973 -7980064 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1664 2770 173 61 9 chr6 141536973 141537354 -7979683 + MERVK26-int LTR ERVK 1707 2089 -4830 5 1664 1487 198 47 12 chr6 141537349 141537630 -7979407 + MERVK26-int LTR ERVK 6018 6310 -609 5 1664 963 26 0 0 chr6 141537630 141537744 -7979293 + (GA)n Simple_repeat Simple_repeat 1 114 0 6 1664 1487 198 47 12 chr6 141537744 141537784 -7979253 + MERVK26-int LTR ERVK 6311 6350 -569 5 1664 2671 157 119 5 chr6 141537784 141537922 -7979115 - L1_Mur2 LINE L1 -960 4917 4732 6 1664 531 0 0 0 chr6 141537922 141537981 -7979056 + (TC)n Simple_repeat Simple_repeat 2 60 0 6 1664 351 0 0 0 chr6 141537981 141538019 -7979018 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1664 2671 157 119 5 chr6 141538019 141538469 -7978568 - L1_Mur2 LINE L1 -1146 4731 4262 6 1664 443 309 69 50 chr6 141538469 141538687 -7978350 - RMER12 LTR ERVK 0 1322 1101 6 1664 5554 75 37 14 chr6 141538946 141539330 -7977707 - RLTR22_Mus LTR ERVK -997 811 408 6 1664 7048 94 19 9 chr6 141539330 141540342 -7976695 + RLTR13D2 LTR ERVK 2 1023 0 6 1664 5554 75 37 14 chr6 141540342 141540750 -7976287 - RLTR22_Mus LTR ERVK -1401 407 1 6 1664 8099 186 44 11 chr6 141540750 141542659 -7974378 - L1_Mur2 LINE L1 -1611 4266 2294 6 1664 3086 23 0 0 chr6 141542660 141543006 -7974031 + ORR1A0 LTR MaLR 1 346 0 6 1664 11422 52 10 1 chr6 141543006 141544518 -7972519 + ORR1A0-int LTR MaLR 1 1526 -266 6 1664 400 127 0 45 chr6 141544514 141544580 -7972457 - RLTR9E LTR ERVK -346 63 1 6 1664 420 99 0 66 chr6 141544581 141544657 -7972380 - ETnERV2-int LTR ERVK -5 7401 7331 6 1664 1931 177 142 6 chr6 141544657 141545131 -7971906 - RLTR13D6 LTR ERVK -363 539 1 7 1664 1324 177 16 4 chr6 141545142 141545391 -7971646 - ETnERV3-int LTR ERVK -28 5780 5529 7 1664 282 119 48 48 chr6 141545403 141545465 -7971572 - RLTR45-int LTR ERVK -1172 6072 6011 7 1664 1152 168 30 18 chr6 141545562 141545915 -7971122 - ETnERV2-int LTR ERVK -977 6429 6126 6 1664 3324 193 28 71 chr6 141545883 141546970 -7970067 - ETnERV2-int LTR ERVK -1703 3141 2356 7 1664 3491 130 17 5 chr6 141546965 141547546 -7969491 - ETnERV2-int LTR ERVK -3377 4029 3442 7 1664 1430 154 146 33 chr6 141547832 141548548 -7968489 - ETnERV2-int LTR ERVK -4271 3135 2479 7 1664 184 329 38 50 chr6 141548550 141548630 -7968407 + L4 LINE RTE 1010 1088 -941 7 1664 2218 139 134 73 chr6 141548668 141549296 -7967741 - ETnERV2-int LTR ERVK -5666 1740 1075 7 1664 448 197 45 76 chr6 141549287 141549485 -7967552 - ETnERV2-int LTR ERVK -4545 299 108 7 1664 1470 111 244 25 chr6 141549617 141549929 -7967108 - RLTR9E LTR ERVK 0 393 14 7 1664 220 179 0 0 chr6 141549939 141549978 -7967059 + G-rich Low_complexity Low_complexity 1 39 0 7 1664 1183 205 59 61 chr6 141549983 141550489 -7966548 - L1_Mur3 LINE L1 -4497 1380 876 7 1664 2050 312 69 28 chr6 141550867 141552224 -7964813 - L1_Mur3 LINE L1 -71 5809 4397 7 1664 408 20 0 0 chr6 141552246 141552295 -7964742 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1664 455 265 94 0 chr6 141552295 141552412 -7964625 - B3 SINE B2 -30 186 59 7 1664 257 229 0 0 chr6 141552441 141552524 -7964513 - L1M4 LINE L1 -2401 3745 3663 8 1664 973 254 22 4 chr6 141554704 141554929 -7962108 - ORR1D1 LTR MaLR 0 374 146 8 1664 2590 137 20 33 chr6 141555080 141555539 -7961498 - RLTR11B LTR ERVK 0 453 1 8 1664 3956 228 67 30 chr6 141555540 141556835 -7960202 - MYSERV-int LTR ERVK -2 6548 5384 8 1664 326 279 79 34 chr6 141556839 141556928 -7960109 - RMER4A LTR ERVK -41 425 333 8 1664 856 178 4 27 chr6 141556929 141557129 -7959908 - MYSERV-int LTR ERVK -385 5395 5252 8 1664 2202 138 0 0 chr6 141557129 141557456 -7959581 - ORR1A2 LTR MaLR 0 327 1 8 1664 1828 114 32 3 chr6 141557456 141557738 -7959299 - ORR1A2-int LTR MaLR 0 1963 1674 8 25 1653 251 86 30 chr6 141557744 141558537 -7958500 - MYSERV-int LTR ERVK -1705 621 2 8 1665 567 337 4 51 chr6 141558537 141558793 -7958244 - MurERV4-int LTR ERVK -474 4786 4543 8 1665 21 0 0 0 chr6 141559254 141559275 -7957762 + AT_rich Low_complexity Low_complexity 1 21 0 8 1665 2322 136 51 45 chr6 141559856 141560304 -7956733 - RLTR11B LTR ERVK 0 453 3 8 1665 272 256 25 25 chr6 141560754 141560834 -7956203 - RLTR28 LTR ERVL -13 511 432 8 1665 666 297 0 28 chr6 141561023 141561203 -7955834 - RLTR28 LTR ERVL -349 175 1 8 1665 550 282 57 90 chr6 141561269 141561693 -7955344 - MYSERV-int LTR ERVK -83 3155 2746 8 1665 346 259 68 18 chr6 141562469 141562643 -7954394 - L1M2 LINE L1 -929 5214 5016 8 1665 531 126 0 0 chr6 141563449 141563544 -7953493 + (CA)n Simple_repeat Simple_repeat 2 96 0 9 1665 192 40 0 0 chr6 141563547 141563572 -7953465 + (CAGAGA)n Simple_repeat Simple_repeat 2 26 0 9 1665 2152 246 54 79 chr6 141564548 141565397 -7951640 + L1_Rod LINE L1 2020 2847 -3000 9 1665 2541 123 45 9 chr6 141565395 141565837 -7951200 + Lx3C LINE L1 2050 2507 -3370 9 1665 33362 87 14 3 chr6 141565837 141571927 -7945110 - L1Md_F2 LINE L1 -5 6577 415 9 1665 19732 133 17 11 chr6 141571928 141572251 -7944786 + Lx3C LINE L1 2498 2822 -3055 9 1665 3492 23 0 0 chr6 141572251 141572647 -7944390 - MTA_Mm LTR MaLR 0 396 1 9 1665 19732 133 17 11 chr6 141572647 141574971 -7942066 + Lx3C LINE L1 2823 5173 -704 9 1665 2420 93 3 0 chr6 141574971 141575295 -7941742 - ORR1A2 LTR MaLR -2 325 1 9 1665 19732 151 42 12 chr6 141575295 141576171 -7940866 + Lx3C LINE L1 5174 6091 -967 9 1665 5728 68 7 14 chr6 141576179 141576937 -7940100 + L1Md_F2 LINE L1 5821 6572 -10 9 1665 4269 116 86 0 chr6 141576938 141577621 -7939416 + L1_Mm LINE L1 4252 4993 -890 9 1665 612 0 0 0 chr6 141578418 141578486 -7938551 + (TC)n Simple_repeat Simple_repeat 1 68 0 9 1665 279 0 0 0 chr6 141579047 141579078 -7937959 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1665 180 0 0 0 chr6 141579244 141579264 -7937773 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1665 1082 90 7 0 chr6 141579318 141579463 -7937574 + B1_Mus1 SINE Alu 2 147 -1 1 1665 2064 160 44 10 chr6 141579591 141580001 -7937036 - RMER12 LTR ERVK -591 731 308 1 1665 417 178 17 8 chr6 141580721 141580840 -7936197 + (TA)n Simple_repeat Simple_repeat 2 121 0 1 1665 341 344 32 16 chr6 141580844 141580968 -7936069 - ID_B1 SINE B4 -15 209 84 1 1665 451 262 102 14 chr6 141581105 141581185 -7935852 + B4 SINE B4 133 212 -80 1 1665 702 60 0 0 chr6 141581185 141581285 -7935752 + (CAAAA)n Simple_repeat Simple_repeat 2 101 0 1 1665 451 262 102 14 chr6 141581285 141581351 -7935686 + B4 SINE B4 213 292 0 1 1665 416 336 0 0 chr6 141581352 141581483 -7935554 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 1665 309 176 20 0 chr6 141581483 141581534 -7935503 + HAL1-3A_ME LINE L1 1976 2027 -831 1 1665 216 0 0 0 chr6 141581878 141581902 -7935135 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1665 264 167 0 0 chr6 141581908 141581956 -7935081 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1665 672 48 0 0 chr6 141581957 141582041 -7934996 + (GA)n Simple_repeat Simple_repeat 1 84 0 1 1665 358 357 91 8 chr6 141582066 141582320 -7934717 - MER82 DNA MER2_type -378 275 1 1 1665 23 54 0 0 chr6 141582620 141582657 -7934380 + AT_rich Low_complexity Low_complexity 1 37 0 1 1665 242 29 0 28 chr6 141583725 141583761 -7933276 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1665 1071 222 259 19 chr6 141584269 141584682 -7932355 - RMER15 LTR ERVL -36 539 28 1 1665 273 57 0 0 chr6 141585053 141585088 -7931949 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1665 1123 52 0 0 chr6 141585089 141585224 -7931813 - B1_Mm SINE Alu -12 135 1 1 1665 1139 279 45 14 chr6 141585271 141585627 -7931410 - ORR1D2 LTR MaLR 0 370 4 1 1665 1919 289 189 26 chr6 141585646 141587511 -7929526 - L1MC LINE L1 -864 5282 3113 1 1665 2267 192 0 14 chr6 141587511 141587924 -7929113 + MTB_Mm LTR MaLR 1 407 0 1 1665 1325 121 0 0 chr6 141588299 141588489 -7928548 + L1_Mm LINE L1 5525 5714 -169 1 1665 288 0 0 0 chr6 141588514 141588546 -7928491 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1665 320 314 77 0 chr6 141588546 141588740 -7928297 + L1M2 LINE L1 5269 5477 -823 1 1665 207 100 0 0 chr6 141588746 141588776 -7928261 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1665 583 285 20 14 chr6 141588779 141588925 -7928112 - RSINE1 SINE B4 -17 148 2 1 1665 729 203 145 31 chr6 141589656 141589849 -7927188 - B3 SINE B2 0 216 2 1 1665 230 337 38 67 chr6 141590315 141590420 -7926617 + B1F1 SINE Alu 1 102 -47 1 1665 315 0 0 0 chr6 141590429 141590464 -7926573 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1665 651 134 0 0 chr6 141590465 141590607 -7926430 + (CAGA)n Simple_repeat Simple_repeat 2 143 0 1 1665 2348 150 49 28 chr6 141590612 141591038 -7925999 + Lx4A LINE L1 6620 7054 -4 1 1665 210 130 104 42 chr6 141591213 141591261 -7925776 - B3A SINE B2 -143 55 5 1 1665 474 289 75 90 chr6 141591327 141591873 -7925164 - L1MB2 LINE L1 -160 6247 5709 1 1665 516 274 128 31 chr6 141591939 141592259 -7924778 + L1M3 LINE L1 3451 3801 -2339 1 1665 292 363 23 53 chr6 141592335 141592466 -7924571 + RSINE1 SINE B4 39 165 0 1 1665 247 234 140 59 chr6 141592504 141592640 -7924397 - L1MB2 LINE L1 -1088 5288 5142 1 1665 288 158 0 0 chr6 141592811 141592868 -7924169 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1665 287 325 58 19 chr6 141593030 141593213 -7923824 - L1MB2 LINE L1 -1988 4394 4197 1 1665 902 242 37 53 chr6 141593223 141593467 -7923570 - ORR1D1 LTR MaLR 0 374 135 1 1665 751 109 53 3 chr6 141593599 141593906 -7923131 + (TCTA)n Simple_repeat Simple_repeat 1 322 0 1 1665 2493 204 62 59 chr6 141593918 141594532 -7922505 + RLTR18 LTR ERVK 1 616 0 1 1665 24 0 0 0 chr6 141594715 141594739 -7922298 + AT_rich Low_complexity Low_complexity 1 24 0 1 1665 820 221 89 5 chr6 141594745 141594936 -7922101 - B3 SINE B2 -9 207 1 1 1665 380 310 99 10 chr6 141595000 141595202 -7921835 - L1MB2 LINE L1 -3999 2385 2166 1 1665 289 312 31 50 chr6 141595354 141595674 -7921363 - L1MB2 LINE L1 -4539 1845 1534 1 1665 561 299 81 35 chr6 141595684 141595968 -7921069 - MLT1A0 LTR MaLR -53 312 16 1 1665 236 282 38 13 chr6 141595983 141596062 -7920975 - L2 LINE L2 -773 2646 2566 1 1665 1370 222 42 61 chr6 141596130 141596292 -7920745 + ORR1D1 LTR MaLR 1 170 -204 1 1665 582 15 0 0 chr6 141596292 141596359 -7920678 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 1665 1370 222 42 61 chr6 141596359 141596575 -7920462 + ORR1D1 LTR MaLR 171 372 -2 1 1665 558 0 0 0 chr6 141597899 141597961 -7919076 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1665 258 32 0 0 chr6 141597986 141598017 -7919020 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1665 665 318 6 0 chr6 141598017 141598193 -7918844 - B3A SINE B2 -21 177 1 1 1665 567 43 0 0 chr6 141598501 141598571 -7918466 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1665 3183 44 18 0 chr6 141598580 141598969 -7918068 + MTA_Mm LTR MaLR 1 396 0 1 1665 2341 87 12 3 chr6 141599627 141599960 -7917077 + L1_Mus3 LINE L1 6301 6636 -2 1 1665 528 321 15 30 chr6 141600280 141600479 -7916558 + B3A SINE B2 1 196 -2 1 1665 465 66 0 0 chr6 141600592 141600653 -7916384 + (TTG)n Simple_repeat Simple_repeat 2 62 0 1 1665 704 191 7 14 chr6 141600653 141600791 -7916246 - B1_Mur3 SINE Alu -10 139 3 1 1665 264 336 25 17 chr6 141601110 141601228 -7915809 - Lx8 LINE L1 -224 7249 7131 1 1665 597 28 0 0 chr6 141601307 141601378 -7915659 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1665 390 42 0 0 chr6 141601378 141601425 -7915612 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1665 713 266 43 14 chr6 141602060 141602270 -7914767 - B3 SINE B2 0 216 1 1 1665 273 119 0 0 chr6 141602467 141602509 -7914528 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1665 1058 106 0 0 chr6 141603154 141603296 -7913741 + B1_Mm SINE Alu 1 142 -5 1 1665 372 89 38 0 chr6 141603304 141603383 -7913654 + (CAAAAA)n Simple_repeat Simple_repeat 3 84 0 1 1665 395 280 36 99 chr6 141604182 141604293 -7912744 + PB1D10 SINE Alu 10 116 -33 1 1665 689 230 161 0 chr6 141604693 141604854 -7912183 + B3 SINE B2 1 187 -29 1 1665 24 67 0 0 chr6 141604983 141605028 -7912009 + AT_rich Low_complexity Low_complexity 1 45 0 1 1665 362 212 13 77 chr6 141605551 141605680 -7911357 - B3 SINE B2 0 216 10 1 1665 370 322 110 12 chr6 141605702 141605947 -7911090 + Lx8 LINE L1 7137 7405 -68 1 1665 5130 71 1 3 chr6 141606355 141607022 -7910015 - L1Md_F2 LINE L1 -11 6571 5906 1 1665 1053 116 7 0 chr6 141607119 141607266 -7909771 - B1_Mus1 SINE Alu 0 148 1 1 1665 8076 86 3 1 chr6 141608824 141610663 -7906374 - L1_Mus1 LINE L1 0 6567 4727 1 1665 254 283 26 46 chr6 141611693 141611787 -7905250 - B4 SINE B4 -195 97 3 1 1665 238 327 50 58 chr6 141611887 141612007 -7905030 - Kanga1 DNA Tc2 -1626 119 1 1 1665 1088 229 93 108 chr6 141612494 141612872 -7904165 - ORR1D1 LTR MaLR 0 374 3 1 1665 225 345 0 23 chr6 141612934 141613020 -7904017 + B3A SINE B2 3 86 -112 1 1665 1913 173 137 22 chr6 141613023 141613526 -7903511 + RLTR31_Mm LTR ERVK 1 561 0 1 1665 1002 237 130 105 chr6 141613526 141614371 -7902666 + RMER3D-int LTR ERVK 1 1214 -1628 1 1665 200 273 18 0 chr6 141614371 141614426 -7902611 - L2 LINE L2 -610 2809 2754 1 1665 1002 237 130 105 chr6 141614426 141614536 -7902501 + RMER3D-int LTR ERVK 1215 1374 -1468 1 1665 207 88 0 0 chr6 141614536 141614570 -7902467 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1 1665 1002 233 136 114 chr6 141614570 141614653 -7902384 + RMER3D-int LTR ERVK 1375 1462 -1380 1 1665 367 268 30 59 chr6 141614676 141614811 -7902226 + B4A SINE B4 140 270 -22 1 1665 229 214 18 18 chr6 141614858 141614915 -7902122 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1665 468 0 0 0 chr6 141615115 141615167 -7901870 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 1 1665 233 194 14 139 chr6 141615811 141615883 -7901154 + PB1D10 SINE Alu 55 117 0 1 1665 1484 278 41 11 chr6 141615904 141616272 -7900765 + MTE2b LTR MaLR 1 379 0 1 1665 255 125 0 0 chr6 141616524 141616564 -7900473 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1665 531 294 11 48 chr6 141616765 141616954 -7900083 + B3A SINE B2 1 182 -16 1 1665 796 110 34 23 chr6 141618306 141618483 -7898554 + GA-rich Low_complexity Low_complexity 1 179 0 1 1665 1131 108 0 0 chr6 141618490 141618761 -7898276 + (GAA)n Simple_repeat Simple_repeat 1 271 0 1 1665 465 19 0 0 chr6 141619211 141619265 -7897772 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1665 333 174 0 0 chr6 141620530 141620599 -7896438 + CT-rich Low_complexity Low_complexity 3 71 0 1 1665 21 57 0 0 chr6 141621197 141621232 -7895805 + AT_rich Low_complexity Low_complexity 1 35 0 1 1665 8107 134 35 8 chr6 141621235 141622335 -7894702 - Lx2 LINE L1 -1 6996 5860 1 1665 180 0 0 0 chr6 141622335 141622355 -7894682 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1665 8107 162 9 11 chr6 141622355 141623680 -7893357 - Lx2 LINE L1 -26 5860 4550 1 1665 314 300 54 9 chr6 141624115 141624226 -7892811 - PB1D10 SINE Alu 0 117 2 1 1665 284 307 0 13 chr6 141625097 141625173 -7891864 - B4 SINE B4 -215 77 3 1 1665 24 0 0 0 chr6 141625326 141625350 -7891687 + AT_rich Low_complexity Low_complexity 1 24 0 1 1665 587 319 11 16 chr6 141625845 141625995 -7891042 + B3A SINE B2 3 149 -49 1 1665 504 0 0 0 chr6 141625995 141626051 -7890986 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1665 587 319 11 16 chr6 141626051 141626091 -7890946 + B3A SINE B2 150 191 -7 1 1665 1107 62 7 7 chr6 141626176 141626322 -7890715 - B1_Mm SINE Alu 0 147 2 1 1665 385 298 26 9 chr6 141628360 141628475 -7888562 - PB1 SINE Alu 0 127 11 1 1665 465 343 17 11 chr6 141629002 141629182 -7887855 - B3A SINE B2 -16 182 2 1 1665 262 247 182 18 chr6 141629504 141629598 -7887439 + PB1D10 SINE Alu 1 105 -42 1 1665 207 0 0 0 chr6 141629787 141629810 -7887227 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1665 206 143 15 45 chr6 141630844 141630910 -7886127 + GA-rich Low_complexity Low_complexity 3 66 0 2 1665 564 286 47 7 chr6 141631037 141631238 -7885799 - B3A SINE B2 -3 213 1 2 1665 243 0 0 0 chr6 141631362 141631389 -7885648 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1665 21 0 0 0 chr6 141631559 141631580 -7885457 + AT_rich Low_complexity Low_complexity 1 21 0 2 1665 713 271 28 37 chr6 141631910 141632128 -7884909 - B3 SINE B2 0 216 1 2 1665 21 36 0 0 chr6 141632134 141632162 -7884875 + AT_rich Low_complexity Low_complexity 1 28 0 2 1665 194 356 58 0 chr6 141632259 141632346 -7884691 - MIRc SINE MIR -116 152 61 2 1665 21 89 0 0 chr6 141632557 141632613 -7884424 + AT_rich Low_complexity Low_complexity 1 56 0 2 1665 777 176 0 7 chr6 141632625 141632768 -7884269 - B1_Mur3 SINE Alu 0 149 8 2 1665 192 77 0 0 chr6 141633272 141633298 -7883739 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2 1665 465 369 50 75 chr6 141633346 141633706 -7883331 - L1MCa LINE L1 -5604 904 554 2 1665 276 211 0 13 chr6 141634900 141634977 -7882060 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1665 1015 281 51 79 chr6 141635124 141635479 -7881558 - ORR1E LTR MaLR -7 352 8 2 1665 1674 221 45 203 chr6 141635634 141636359 -7880678 + RMER19C LTR ERVK 1 611 0 2 1665 418 214 0 0 chr6 141636397 141636481 -7880556 + RLTR19-int LTR ERVK 1885 1968 -3554 2 1665 618 209 60 6 chr6 141636488 141636671 -7880366 + RLTR19-int LTR ERVK 1935 2127 -3395 2 1665 3608 194 46 5 chr6 141636831 141637505 -7879532 - Lx5 LINE L1 -3 7047 6346 2 1665 2768 86 37 3 chr6 141637680 141638063 -7878974 - MTA_Mm LTR MaLR 0 396 1 2 1665 7975 70 16 4 chr6 141638063 141639148 -7877889 - MTA_Mm-int LTR MaLR 0 1098 1 2 1665 3196 53 5 2 chr6 141639148 141639543 -7877494 - MTA_Mm LTR MaLR 0 396 1 2 1665 519 300 106 46 chr6 141639572 141639894 -7877143 + RMER20B LTR ERVK 193 496 -146 2 1665 325 336 9 35 chr6 141640090 141640204 -7876833 + RMER20B LTR ERVK 493 603 -24 2 1665 685 260 85 106 chr6 141640206 141640773 -7876264 + RLTR19-int LTR ERVK 2451 3005 -3132 2 1665 1151 61 0 20 chr6 141640795 141640945 -7876092 - B1_Mus2 SINE Alu 0 147 1 2 1665 189 178 0 0 chr6 141641091 141641136 -7875901 + A-rich Low_complexity Low_complexity 1 45 0 2 1665 21 0 0 0 chr6 141641188 141641209 -7875828 + AT_rich Low_complexity Low_complexity 1 21 0 2 1665 2410 99 3 3 chr6 141641300 141641666 -7875371 + MusHAL1 LINE L1 2296 2661 -51 2 1665 6606 109 38 6 chr6 141641680 141642815 -7874222 + Lx LINE L1 5484 6654 0 2 1665 2418 161 22 5 chr6 141642811 141643255 -7873782 + L1_Mur2 LINE L1 5426 5877 0 2 1665 2384 157 14 64 chr6 141643287 141643789 -7873248 + Lx5 LINE L1 5113 5589 -288 2 1665 878 37 0 0 chr6 141643808 141643916 -7873121 + B1_Mm SINE Alu 38 145 -2 2 1665 570 162 18 0 chr6 141643918 141644029 -7873008 + Lx5 LINE L1 5763 5875 -1175 2 1665 600 167 0 0 chr6 141644027 141644135 -7872902 + L1_Mur2 LINE L1 2904 3011 -2866 2 1665 275 200 0 18 chr6 141644135 141644191 -7872846 - RLTR31_Mur LTR ERVK 0 553 499 2 1665 1585 286 41 33 chr6 141644173 141644683 -7872354 - RLTR17 LTR ERVK -74 618 105 2 1665 340 255 57 0 chr6 141644731 141644837 -7872200 - RMER3D-int LTR ERVK -1199 1643 1532 2 1665 29 47 0 0 chr6 141644852 141644895 -7872142 + AT_rich Low_complexity Low_complexity 1 43 0 2 1665 7030 80 10 18 chr6 141644953 141646264 -7870773 - L1_Mus2 LINE L1 -1 6565 5268 2 1665 15706 125 16 14 chr6 141646273 141647074 -7869963 - L1_Mus2 LINE L1 -1898 3985 3181 2 1665 207 0 0 0 chr6 141647074 141647097 -7869940 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1665 15706 124 14 13 chr6 141647097 141649127 -7867910 - L1_Mus2 LINE L1 -2703 3180 1150 2 1665 180 0 0 0 chr6 141649147 141649167 -7867870 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2 1665 7823 49 1 3 chr6 141649176 141650858 -7866179 - L1Md_F2 LINE L1 -1 6581 4904 2 1665 9796 80 50 0 chr6 141650848 141653410 -7863627 - L1Md_F2 LINE L1 -3127 2756 99 2 1665 2785 199 59 8 chr6 141653402 141654060 -7862977 - L1_Mus2 LINE L1 -5410 1206 536 2 1665 281 248 66 8 chr6 141654054 141654176 -7862861 - L1VL2 LINE L1 -6139 196 68 2 1665 251 306 25 107 chr6 141654258 141654379 -7862658 + L2a LINE L2 3272 3421 -5 2 1665 520 325 31 0 chr6 141655173 141655336 -7861701 - B3A SINE B2 -30 168 1 2 1665 285 325 114 52 chr6 141655435 141655646 -7861391 + ORR1E LTR MaLR 1 224 -135 2 1665 33 94 0 0 chr6 141655977 141656073 -7860964 + AT_rich Low_complexity Low_complexity 1 96 0 2 1665 897 296 76 0 chr6 141656169 141656513 -7860524 - ORR1D2 LTR MaLR 0 370 1 2 1665 548 287 54 55 chr6 141657473 141657729 -7859308 + MTEb LTR MaLR 2 316 -63 2 1665 493 322 65 16 chr6 141657985 141658171 -7858866 - B3A SINE B2 -3 195 1 2 1665 414 325 51 40 chr6 141658435 141658611 -7858426 + MTD LTR MaLR 1 178 -241 2 1665 455 279 23 30 chr6 141658772 141658905 -7858132 - MTE2a LTR MaLR -4 375 244 2 1665 498 101 0 39 chr6 141659632 141659735 -7857302 + L1Md_F2 LINE L1 6482 6580 -2 2 1665 22 0 0 0 chr6 141660205 141660227 -7856810 + AT_rich Low_complexity Low_complexity 1 22 0 2 1665 495 0 0 0 chr6 141660309 141660364 -7856673 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1665 682 329 39 18 chr6 141661236 141661617 -7855420 + RMER5 LTR ERV1 146 534 0 2 1665 217 167 24 0 chr6 141661786 141661828 -7855209 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 1665 212 309 55 0 chr6 141661933 141661988 -7855049 + RSINE1 SINE B4 75 132 -33 2 1665 1236 41 0 0 chr6 141662281 141662428 -7854609 + B1_Mm SINE Alu 1 147 0 2 1665 1061 110 0 14 chr6 141662569 141662705 -7854332 + B1_Mus1 SINE Alu 2 137 -11 2 1665 354 74 0 0 chr6 141662705 141662759 -7854278 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2 1665 235 188 60 45 chr6 141663042 141663109 -7853928 + B4 SINE B4 15 82 -210 2 1665 207 186 0 0 chr6 141663171 141663214 -7853823 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1665 782 290 31 4 chr6 141663383 141663608 -7853429 - 7SK RNA RNA -96 235 5 2 1665 1143 93 0 0 chr6 141663860 141664022 -7853015 + (GGAGA)n Simple_repeat Simple_repeat 3 164 0 2 1665 22907 109 10 18 chr6 141664450 141670342 -7846695 - L1_Mus1 LINE L1 -1 6566 725 2 1665 434 242 22 15 chr6 141670344 141670478 -7846559 - L1_Mus1 LINE L1 -5807 809 675 2 1665 354 296 22 72 chr6 141670509 141670823 -7846214 - L1VL1 LINE L1 -5941 477 45 2 1665 314 330 93 115 chr6 141671198 141671468 -7845569 + B4 SINE B4 6 269 -23 2 1665 264 30 0 0 chr6 141671963 141671996 -7845041 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 1665 1065 90 0 14 chr6 141672094 141672241 -7844796 + B1_Mus1 SINE Alu 3 147 -1 2 1665 220 167 33 0 chr6 141672242 141672302 -7844735 + A-rich Low_complexity Low_complexity 4 65 0 2 1665 246 318 0 0 chr6 141672395 141672461 -7844576 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 1665 225 0 0 0 chr6 141672605 141672630 -7844407 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2 1665 441 288 98 62 chr6 141672895 141673169 -7843868 + B4A SINE B4 2 285 -7 2 1665 234 300 0 16 chr6 141673267 141673328 -7843709 + ID_B1 SINE B4 159 218 -6 2 1665 623 255 83 44 chr6 141673356 141673561 -7843476 - B3 SINE B2 -3 213 1 2 1665 22 88 0 0 chr6 141674978 141675035 -7842002 + AT_rich Low_complexity Low_complexity 1 57 0 2 1665 450 0 0 0 chr6 141675162 141675212 -7841825 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1665 383 307 59 38 chr6 141675265 141675482 -7841555 - B4A SINE B4 -75 217 2 2 1665 258 148 0 0 chr6 141676497 141676551 -7840486 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1665 1074 107 6 11 chr6 141676767 141676946 -7840091 + (GAA)n Simple_repeat Simple_repeat 2 179 0 2 1665 264 325 0 12 chr6 141676947 141677028 -7840009 + GA-rich Low_complexity Low_complexity 1 80 0 2 1665 23668 117 10 50 chr6 141677306 141682620 -7834417 + L1_Mus1 LINE L1 217 5121 -762 2 1665 387 0 0 0 chr6 141682620 141682663 -7834374 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1665 18745 127 37 33 chr6 141682663 141684079 -7832958 + L1_Mus1 LINE L1 5117 6565 -2 2 1665 195 69 0 0 chr6 141684092 141684121 -7832916 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1665 1383 221 66 24 chr6 141684243 141684577 -7832460 + ORR1B1 LTR MaLR 47 394 0 2 1665 5003 203 41 80 chr6 141685287 141685825 -7831212 + L1_Mur2 LINE L1 2656 3213 -2664 2 1665 378 0 0 0 chr6 141685825 141685867 -7831170 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1665 5003 203 41 80 chr6 141685867 141686931 -7830106 + L1_Mur2 LINE L1 3214 4196 -1681 2 1665 603 0 0 0 chr6 141686961 141687028 -7830009 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 1665 191 36 36 0 chr6 141687028 141687055 -7829982 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1665 603 0 0 0 chr6 141687727 141687794 -7829243 + (TTTTC)n Simple_repeat Simple_repeat 4 70 0 2 1665 954 171 0 0 chr6 141687797 141687973 -7829064 + CT-rich Low_complexity Low_complexity 3 178 0 2 1665 524 333 27 0 chr6 141688238 141688388 -7828649 + B3A SINE B2 1 154 -44 2 1665 705 24 0 0 chr6 141688396 141688479 -7828558 + (TC)n Simple_repeat Simple_repeat 1 83 0 2 1665 261 0 0 0 chr6 141688479 141688507 -7828530 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1666 251 50 0 48 chr6 141689112 141689154 -7827883 + (TTA)n Simple_repeat Simple_repeat 3 42 0 2 1666 626 167 8 0 chr6 141689156 141689276 -7827761 - Lx2A1 LINE L1 -12 6996 6876 2 1666 1164 191 16 0 chr6 141689280 141689532 -7827505 + L1_Mur2 LINE L1 4456 4711 -1175 2 1666 603 120 0 0 chr6 141689534 141689651 -7827386 + (TATG)n Simple_repeat Simple_repeat 2 118 0 2 1666 5228 127 20 12 chr6 141689674 141690522 -7826515 + RLTR13A LTR ERVK 1 855 0 2 1666 260 323 45 30 chr6 141691018 141691143 -7825894 + MTE2a LTR MaLR 1 127 -292 2 1666 482 257 61 102 chr6 141691143 141691379 -7825658 + RMER17C LTR ERVK 1 233 -177 2 1666 715 31 20 10 chr6 141691379 141691477 -7825560 + (TCTCC)n Simple_repeat Simple_repeat 2 100 0 2 1666 482 261 39 72 chr6 141691477 141691692 -7825345 + RMER17C LTR ERVK 170 377 -33 2 1666 478 308 78 95 chr6 141691695 141691989 -7825048 + MTE2a LTR MaLR 90 378 -1 2 1666 730 175 35 0 chr6 141692689 141692832 -7824205 - RMER1C Other Other -148 1194 1047 2 1666 277 360 138 41 chr6 141693310 141693455 -7823582 + MER63A DNA AcHobo 2 160 -50 2 1666 237 290 60 0 chr6 141694451 141694551 -7822486 + RLTR15 LTR ERVK 151 256 -103 2 1666 452 296 28 14 chr6 141694928 141695072 -7821965 - B3 SINE B2 -32 184 39 2 1666 850 276 170 12 chr6 141695073 141695326 -7821711 + ORR1D2 LTR MaLR 1 293 -77 3 1666 749 191 31 0 chr6 141695327 141695489 -7821548 + URR1B DNA MER1_type 59 225 0 3 1666 1097 268 94 3 chr6 141695619 141695949 -7821088 + MTD LTR MaLR 60 419 0 3 1666 37179 53 12 4 chr6 141696002 141702460 -7814577 - L1Md_T LINE L1 0 6582 110 3 1666 403 340 37 30 chr6 141703140 141703266 -7813771 + RSINE1 SINE B4 1 124 -41 3 1666 543 117 0 0 chr6 141703266 141703360 -7813677 + (CA)n Simple_repeat Simple_repeat 2 95 0 3 1666 403 340 37 30 chr6 141703360 141703397 -7813640 + RSINE1 SINE B4 125 165 0 3 1666 237 83 0 0 chr6 141703416 141703452 -7813585 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1666 562 341 12 0 chr6 141703464 141703637 -7813400 + ID_B1 SINE B4 46 220 -4 3 1666 706 325 33 9 chr6 141704285 141704499 -7812538 + ID_B1 SINE B4 6 224 0 3 1666 305 341 106 0 chr6 141704557 141704680 -7812357 + RSINE1 SINE B4 23 158 -7 3 1666 204 97 0 0 chr6 141704742 141704773 -7812264 + (CTA)n Simple_repeat Simple_repeat 1 31 0 3 1666 21 0 0 0 chr6 141705567 141705588 -7811449 + AT_rich Low_complexity Low_complexity 1 21 0 3 1666 1160 50 0 0 chr6 141705708 141705847 -7811190 + B1_Mus1 SINE Alu 1 139 -9 3 1666 563 309 0 7 chr6 141706243 141706383 -7810654 + B1F SINE Alu 9 147 -2 3 1666 623 275 41 15 chr6 141706390 141706586 -7810451 + B3 SINE B2 1 201 -15 3 1666 275 164 0 16 chr6 141706589 141706651 -7810386 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 1666 256 152 0 0 chr6 141706651 141706697 -7810340 + B3 SINE B2 165 210 -6 3 1666 27285 98 14 6 chr6 141706817 141711475 -7805562 + L1Md_F LINE L1 162 4864 -1019 3 1666 4982 40 2 7 chr6 141711475 141712083 -7804954 - L1Md_F2 LINE L1 -1 6581 5977 3 1666 27285 89 2 7 chr6 141712083 141712469 -7804568 + L1Md_F LINE L1 4865 5246 -637 3 1666 6856 62 0 9 chr6 141712469 141713352 -7803685 + L1Md_F2 LINE L1 5696 6570 -12 3 1666 27285 89 2 7 chr6 141713352 141713368 -7803669 + L1Md_F LINE L1 5247 5261 -622 3 1666 201 94 0 0 chr6 141713728 141713760 -7803277 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 3 1666 2219 99 9 6 chr6 141714422 141714747 -7802290 + L1_Mus3 LINE L1 6313 6638 0 3 1666 275 383 25 8 chr6 141715203 141715324 -7801713 + B1F1 SINE Alu 5 127 -22 3 1666 359 383 17 64 chr6 141716633 141716806 -7800231 + MER70B LTR ERVL 121 285 -293 3 1666 420 126 0 0 chr6 141716887 141716974 -7800063 + (A)n Simple_repeat Simple_repeat 1 87 0 3 1666 21 0 0 0 chr6 141717146 141717167 -7799870 + AT_rich Low_complexity Low_complexity 1 21 0 3 1666 406 380 65 5 chr6 141717509 141717710 -7799327 - B4 SINE B4 -79 213 1 3 1666 1184 101 0 6 chr6 141718055 141718234 -7798803 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 3 1666 974 157 0 6 chr6 141718234 141718304 -7798733 + polypyrimidine Low_complexity Low_complexity 109 178 0 3 1666 1223 94 0 6 chr6 141718304 141718485 -7798552 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 1666 974 157 0 6 chr6 141718485 141718593 -7798444 + polypyrimidine Low_complexity Low_complexity 1 108 0 3 1666 1158 122 0 0 chr6 141718593 141718773 -7798264 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 3 1666 231 188 0 0 chr6 141718773 141718821 -7798216 + CT-rich Low_complexity Low_complexity 3 50 0 3 1666 3317 231 48 4 chr6 141718832 141719603 -7797434 - Lx5 LINE L1 -4 7046 6242 3 1666 3180 129 113 4 chr6 141720116 141720646 -7796391 + RLTR1D LTR ERV1 1 588 -17 3 1666 1822 214 116 6 chr6 141720715 141721223 -7795814 - Lx4B LINE L1 -656 6402 5839 3 1666 1813 226 176 3 chr6 141721219 141721783 -7795254 + Lx4A LINE L1 6398 7058 0 3 1666 891 204 47 14 chr6 141721807 141722021 -7795016 - URR1B DNA MER1_type 0 225 5 3 1666 232 183 50 0 chr6 141722404 141722464 -7794573 + A-rich Low_complexity Low_complexity 2 64 0 3 1666 1555 281 28 2 chr6 141722492 141722549 -7794488 - MTD LTR MaLR -13 406 340 3 1666 360 0 0 0 chr6 141722549 141722589 -7794448 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 3 1666 1555 281 28 2 chr6 141722589 141722927 -7794110 - MTD LTR MaLR -80 339 2 3 1666 319 275 37 56 chr6 141723202 141723310 -7793727 - RMER12 LTR ERVK -1 1321 1216 3 1666 230 330 19 28 chr6 141723440 141723546 -7793491 - RLTR22_Mus LTR ERVK -1107 701 597 3 1666 782 276 133 105 chr6 141723529 141723905 -7793132 - RMER12 LTR ERVK -544 860 234 3 1666 4161 178 179 11 chr6 141723905 141724857 -7792180 + RLTR13D3 LTR ERVK 3 1114 0 3 1666 782 246 37 137 chr6 141724857 141725113 -7791924 - RMER12 LTR ERVK -1085 237 2 3 1666 852 230 96 31 chr6 141725196 141725456 -7791581 + RMER20B LTR ERVK 123 399 -228 3 1666 768 332 32 29 chr6 141725678 141726087 -7790950 + MERVK26-int LTR ERVK 64 473 -6446 3 1666 267 103 0 0 chr6 141726343 141726382 -7790655 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 3 1666 538 264 57 6 chr6 141727148 141727323 -7789714 + MYSERV6-int LTR ERVK 2881 3064 -5895 3 1666 306 208 250 0 chr6 141727588 141727708 -7789329 + MYSERV6-int LTR ERVK 3512 3661 -2476 3 1666 255 309 96 0 chr6 141728440 141728534 -7788503 - L2a LINE L2 -9 3417 3315 3 1666 216 0 0 0 chr6 141728636 141728660 -7788377 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 3 1666 306 0 0 0 chr6 141728661 141728695 -7788342 + (CAAT)n Simple_repeat Simple_repeat 3 36 0 3 1666 240 324 8 49 chr6 141731636 141731784 -7785253 - L2a LINE L2 0 3426 3251 3 1666 265 364 87 40 chr6 141732124 141732357 -7784680 - LTR33A_ LTR ERVL -266 254 7 3 1666 314 299 86 49 chr6 141733365 141733527 -7783510 + B3A SINE B2 25 192 -6 3 1666 237 317 53 31 chr6 141733541 141733689 -7783348 + B1_Mur2 SINE Alu 5 149 0 3 1666 4077 141 19 34 chr6 141734266 141735092 -7781945 + L1VL4 LINE L1 200 1012 -2547 3 1666 348 24 0 0 chr6 141736262 141736303 -7780734 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1666 410 255 8 68 chr6 141736307 141736425 -7780612 - RSINE1 SINE B4 -52 113 3 3 1666 639 273 136 21 chr6 141736572 141736763 -7780274 + B3 SINE B2 1 213 -3 3 1666 972 238 149 21 chr6 141737198 141737533 -7779504 - MTEa LTR MaLR 0 379 2 3 1666 252 206 27 68 chr6 141737588 141737661 -7779376 - RMER21A LTR ERV1 -105 842 773 3 1666 423 0 0 0 chr6 141737753 141737800 -7779237 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1666 421 179 0 0 chr6 141737803 141737870 -7779167 - Lx5 LINE L1 -711 6339 6273 3 1666 1034 200 19 0 chr6 141737865 141738075 -7778962 + Lx4B LINE L1 5629 5842 -1216 3 1666 481 294 66 9 chr6 141738095 141738308 -7778729 - MYSERV-int LTR ERVK -2131 4419 4195 3 1666 382 256 12 0 chr6 141738445 141738531 -7778506 - B1_Mur3 SINE Alu -6 143 57 3 1666 283 320 0 65 chr6 141738553 141738660 -7778377 - B4A SINE B4 -191 101 2 3 1666 731 262 14 33 chr6 141739296 141739509 -7777528 + B3 SINE B2 1 209 -7 3 1666 468 270 27 21 chr6 141740091 141740229 -7776808 + ORR1A3-int LTR MaLR 274 428 -1152 3 1666 2749 191 43 12 chr6 141740229 141740743 -7776294 + RLTR21 LTR ERVK 1 530 -1042 3 1666 205 171 0 0 chr6 141740769 141740810 -7776227 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1666 1510 199 43 10 chr6 141740895 141741200 -7775837 + ORR1A3 LTR MaLR 4 318 -8 3 1666 2848 201 66 55 chr6 141741214 141742217 -7774820 - RMER12 LTR ERVK -2 713 21 3 1666 437 312 61 57 chr6 141742504 141742751 -7774286 - MuLV-int LTR ERV1 -213 7393 7162 3 1666 25 0 0 0 chr6 141743100 141743125 -7773912 + AT_rich Low_complexity Low_complexity 1 25 0 3 1666 305 388 22 5 chr6 141744291 141744475 -7772562 - RLTR19-int LTR ERVK -1587 4550 4364 3 1666 261 399 13 6 chr6 141744361 141744520 -7772517 - RLTR4_MM-int LTR ERV1 -735 4328 4169 3 1666 267 274 21 19 chr6 141744722 141744829 -7772208 - RLTR4_MM-int LTR ERV1 -3553 4048 3967 3 1666 856 345 35 31 chr6 141744842 141745329 -7771708 - RLTR6-int LTR ERV1 -2388 5390 4902 3 1666 620 362 27 30 chr6 141745659 141746134 -7770903 - RLTR6-int LTR ERV1 -3156 4450 3977 3 1666 566 318 98 47 chr6 141746269 141747187 -7769850 - RLTR6-int LTR ERV1 -3891 3887 2927 3 1666 9905 104 32 87 chr6 141747211 141749014 -7768023 + RLTR22_Mur LTR ERVK 145 1848 0 3 1666 821 172 0 0 chr6 141749014 141749171 -7767866 + L1_Mur2 LINE L1 3325 3481 -2396 3 1666 3511 125 15 69 chr6 141749212 141749828 -7767209 + Lx5 LINE L1 2761 3341 -2536 3 1666 3305 49 23 23 chr6 141749828 141750267 -7766770 - L1Md_F3 LINE L1 -14 6570 6132 3 1666 3511 125 15 69 chr6 141750267 141750362 -7766675 + Lx5 LINE L1 3342 3434 -2443 3 1666 5823 192 18 10 chr6 141750358 141751059 -7765978 + Lx5 LINE L1 4715 5413 -464 3 1666 7140 24 1 5 chr6 141751059 141751884 -7765153 + RLTR13B2 LTR ERVK 1 822 0 3 1666 5823 209 39 12 chr6 141751884 141753088 -7763949 + Lx5 LINE L1 5414 6667 -383 3 1666 2425 208 18 30 chr6 141753103 141753609 -7763428 + RLTR16 LTR ERVK 6 505 0 3 1666 374 194 30 0 chr6 141753618 141753685 -7763352 + Lx5 LINE L1 6722 6790 -268 3 1666 1055 261 111 3 chr6 141753917 141754251 -7762786 - ORR1D2 LTR MaLR 0 370 1 3 1666 465 325 0 0 chr6 141754377 141754500 -7762537 - RSINE1 SINE B4 -41 124 2 3 1666 248 302 0 0 chr6 141754677 141754740 -7762297 - ID4_ SINE ID -13 70 8 3 1666 1225 97 17 6 chr6 141755961 141756137 -7760900 - B2_Mm2 SINE B2 -15 180 3 3 1666 480 316 38 0 chr6 141756184 141756317 -7760720 + MTEb LTR MaLR 2 139 -240 3 1666 21 0 0 0 chr6 141756682 141756703 -7760334 + AT_rich Low_complexity Low_complexity 1 21 0 3 1666 354 321 46 0 chr6 141756777 141756886 -7760151 - B3A SINE B2 -84 114 1 3 1666 180 0 0 0 chr6 141757625 141757645 -7759392 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1666 25 31 0 0 chr6 141757655 141757687 -7759350 + AT_rich Low_complexity Low_complexity 1 32 0 3 1666 22 99 0 0 chr6 141757973 141758044 -7758993 + AT_rich Low_complexity Low_complexity 1 71 0 3 1666 22 35 0 0 chr6 141758049 141758078 -7758959 + AT_rich Low_complexity Low_complexity 1 29 0 3 1666 1119 271 85 36 chr6 141758426 141758873 -7758164 + RMER5 LTR ERV1 56 524 -10 3 1666 207 0 0 0 chr6 141759042 141759065 -7757972 + (CATA)n Simple_repeat Simple_repeat 2 24 0 3 1666 224 291 0 0 chr6 141759188 141759243 -7757794 + RSINE1 SINE B4 76 130 -35 3 1666 22 0 0 0 chr6 141759691 141759713 -7757324 + AT_rich Low_complexity Low_complexity 1 22 0 3 1666 383 302 14 21 chr6 141759777 141759919 -7757118 + GA-rich Low_complexity Low_complexity 5 145 0 3 1666 215 254 183 17 chr6 141760579 141760639 -7756398 + RSINE1 SINE B4 9 78 -87 3 1666 239 0 0 31 chr6 141761102 141761134 -7755903 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1666 379 329 98 42 chr6 141761825 141761968 -7755069 - RSINE1 SINE B4 0 165 15 4 1666 543 328 32 28 chr6 141762287 141762569 -7754468 + B4 SINE B4 3 285 -7 4 1666 1424 51 3 0 chr6 141762575 141762908 -7754129 + (CA)n Simple_repeat Simple_repeat 1 333 0 4 1666 306 151 38 0 chr6 141762966 141763019 -7754018 + ID_B1 SINE B4 167 221 -3 4 1666 480 291 151 32 chr6 141763061 141763246 -7753791 - B3A SINE B2 -7 209 3 4 1666 186 69 49 49 chr6 141763358 141763419 -7753618 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1666 3332 30 2 5 chr6 141763420 141763817 -7753220 - MTA_Mm LTR MaLR 0 396 1 4 1666 495 60 0 0 chr6 141764226 141764293 -7752744 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1666 189 159 0 0 chr6 141764293 141764337 -7752700 + GA-rich Low_complexity Low_complexity 1 44 0 4 1666 324 177 0 40 chr6 141764929 141765029 -7752008 + (TATATG)n Simple_repeat Simple_repeat 4 99 0 4 1666 220 98 0 73 chr6 141765140 141765195 -7751842 + (TCTCTG)n Simple_repeat Simple_repeat 4 54 0 4 1666 576 0 0 0 chr6 141765205 141765269 -7751768 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1666 443 306 70 61 chr6 141765313 141765543 -7751494 - B4 SINE B4 -59 233 2 4 1666 512 30 15 0 chr6 141765597 141765663 -7751374 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1666 243 0 0 0 chr6 141765663 141765689 -7751348 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1666 1420 176 126 10 chr6 141767595 141767905 -7749132 + ORR1B1 LTR MaLR 41 386 -8 4 1666 3925 192 39 5 chr6 141768621 141769458 -7747579 + Lx5 LINE L1 2657 3522 -2355 4 1666 4177 181 67 156 chr6 141769452 141770253 -7746784 + Lx5 LINE L1 4655 5450 -426 4 1666 936 144 6 24 chr6 141770253 141770417 -7746620 + B2_Mm2 SINE B2 4 164 -31 4 1666 549 0 0 0 chr6 141770418 141770479 -7746558 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1666 5654 201 61 66 chr6 141770479 141771864 -7745173 + Lx5 LINE L1 5452 6904 -146 4 1666 270 257 36 98 chr6 141773020 141773132 -7743905 + L4 LINE RTE 1721 1825 -204 4 1666 442 322 39 0 chr6 141774139 141774319 -7742718 + B3A SINE B2 1 187 -11 4 1666 180 0 0 0 chr6 141775097 141775117 -7741920 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1666 1037 119 0 0 chr6 141775462 141775639 -7741398 + Lx2A1 LINE L1 6831 7007 -1 4 1666 940 225 87 163 chr6 141775821 141776229 -7740808 + MTE2a LTR MaLR 1 378 -1 4 1666 1491 197 99 9 chr6 141776785 141777108 -7739929 - RMER1C Other Other -18 1324 973 4 1666 304 154 53 26 chr6 141777808 141777921 -7739116 + (TA)n Simple_repeat Simple_repeat 1 116 0 4 1666 319 288 81 93 chr6 141778579 141778709 -7738328 + RSINE1 SINE B4 7 134 -31 4 1666 531 0 0 0 chr6 141778709 141778768 -7738269 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1666 319 288 81 93 chr6 141778768 141778798 -7738239 + RSINE1 SINE B4 135 165 0 4 1666 272 270 106 59 chr6 141780580 141780816 -7736221 + RLTR15 LTR ERVK 45 291 -68 4 1666 478 289 30 30 chr6 141781144 141781308 -7735729 - B3 SINE B2 -14 202 39 4 1666 845 242 202 8 chr6 141781309 141781546 -7735491 + ORR1D2 LTR MaLR 1 283 -87 4 1666 822 189 18 6 chr6 141781559 141781724 -7735313 + URR1B DNA MER1_type 59 225 0 4 1666 496 266 44 22 chr6 141781567 141781748 -7735289 - CYRA11_Mm Unknown Y-chromosome -288 329 145 4 1666 361 326 97 50 chr6 141781938 141782240 -7734797 + ORR1D1 LTR MaLR 61 369 -5 4 1666 1107 276 71 13 chr6 141782455 141782847 -7734190 + MTD LTR MaLR 1 415 -4 4 1666 639 120 0 0 chr6 141783482 141783590 -7733447 + (CA)n Simple_repeat Simple_repeat 1 108 0 4 1666 535 371 6 0 chr6 141783649 141783824 -7733213 + ID_B1 SINE B4 49 224 0 4 1666 820 283 33 14 chr6 141784959 141785174 -7731863 + ID_B1 SINE B4 6 224 0 4 1666 326 282 130 37 chr6 141785925 141786087 -7730950 + HAL1 LINE L1 771 947 -1560 4 1666 255 189 0 0 chr6 141786484 141786537 -7730500 + GA-rich Low_complexity Low_complexity 2 54 0 4 1666 499 283 13 24 chr6 141786718 141786870 -7730167 + B1F SINE Alu 1 147 -2 4 1666 660 279 66 11 chr6 141786877 141787033 -7730004 + B3 SINE B2 1 167 -49 4 1666 180 111 0 0 chr6 141787033 141787060 -7729977 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1666 660 273 44 107 chr6 141787060 141787108 -7729929 + B3 SINE B2 145 192 -1 4 1666 1211 41 0 7 chr6 141788238 141788385 -7728652 + B1_Mus2 SINE Alu 2 147 0 4 1666 206 0 0 65 chr6 141788385 141788416 -7728621 + (CAAAAA)n Simple_repeat Simple_repeat 6 34 0 4 1666 24 0 0 0 chr6 141788510 141788534 -7728503 + AT_rich Low_complexity Low_complexity 1 24 0 4 1666 245 333 25 25 chr6 141788954 141789074 -7727963 + PB1D7 SINE Alu 5 124 -23 4 1666 815 330 28 14 chr6 141791086 141791372 -7725665 - B4 SINE B4 -2 290 1 4 1666 594 103 0 0 chr6 141791693 141791780 -7725257 + (TCCC)n Simple_repeat Simple_repeat 3 89 0 4 1666 1302 78 0 0 chr6 141791780 141791960 -7725077 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1666 510 61 0 0 chr6 141791960 141792026 -7725011 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 4 1666 4489 180 42 4 chr6 141792044 141792873 -7724164 - Lx5 LINE L1 -5 7045 6185 4 1666 800 59 0 0 chr6 141793121 141793223 -7723814 - B1_Mus2 SINE Alu 0 147 46 4 1666 255 227 69 83 chr6 141793164 141793236 -7723801 - RLTR25B LTR ERVK -519 509 439 4 1666 894 225 13 22 chr6 141793481 141793708 -7723329 - URR1B DNA MER1_type 0 225 1 4 1666 514 27 40 0 chr6 141794103 141794178 -7722859 - L1Md_F3 LINE L1 -15 6569 6492 4 1666 191 62 0 59 chr6 141794196 141794230 -7722807 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 4 1666 1536 298 47 2 chr6 141794260 141794661 -7722376 - MTD LTR MaLR 0 419 1 4 1666 290 374 0 0 chr6 141794686 141794785 -7722252 + B4A SINE B4 48 146 -146 4 1666 1438 262 116 108 chr6 141794925 141796166 -7720871 - RMER12 LTR ERVK -25 1297 5 4 1666 690 253 93 66 chr6 141796225 141796526 -7720511 + RMER20B LTR ERVK 97 405 -222 4 1666 542 301 76 93 chr6 141796851 141797220 -7719817 + MERVK26-int LTR ERVK 86 458 -6461 4 1666 378 0 0 0 chr6 141797220 141797262 -7719775 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 4 1666 542 301 76 93 chr6 141797262 141797353 -7719684 + MERVK26-int LTR ERVK 459 538 -6381 4 1666 652 256 12 3 chr6 141798264 141798463 -7718574 + MYSERV6-int LTR ERVK 2864 3022 -5937 4 1666 359 179 26 0 chr6 141798442 141798520 -7718517 + MERVK26-int LTR ERVK 1267 1346 -4791 4 1666 378 134 110 90 chr6 141798726 141798851 -7718186 + MERVK26-int LTR ERVK 2418 2527 -711 4 1666 312 263 25 122 chr6 141799410 141799648 -7717389 - MER33 DNA MER1_type -2 322 108 4 1666 445 267 185 46 chr6 141800045 141800304 -7716733 + MYSERV-int LTR ERVK 4124 4418 -2132 4 1666 943 218 252 3 chr6 141800643 141800992 -7716045 + MERVK26-int LTR ERVK 6397 6832 -87 4 1666 592 257 132 38 chr6 141801074 141801309 -7715728 + RMER20B LTR ERVK 156 412 -215 4 1666 237 194 175 16 chr6 141801974 141802037 -7715000 - RMER17D LTR ERVK -297 592 520 4 1666 215 227 22 14 chr6 141802954 141803032 -7714005 - L2c LINE L2 -11 3415 3337 4 1666 198 103 0 0 chr6 141803141 141803170 -7713867 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 4 1666 477 0 0 0 chr6 141804973 141805026 -7712011 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1666 244 324 114 0 chr6 141805405 141805510 -7711527 - MIRm SINE MIR 0 276 160 4 1666 260 354 59 39 chr6 141806667 141806820 -7710217 - MIR SINE MIR -3 259 104 4 1666 293 288 41 98 chr6 141807138 141807261 -7709776 + B3A SINE B2 68 183 -15 4 1666 365 333 7 43 chr6 141807294 141807432 -7709605 + B1F2 SINE Alu 17 149 0 4 1666 5247 178 7 14 chr6 141808000 141809034 -7708003 + MurERV4-int LTR ERVK 4228 5253 -7 4 1666 1801 201 62 31 chr6 141809047 141809499 -7707538 + RMER4A LTR ERVK 1 466 0 4 1666 12848 62 1 0 chr6 141809775 141811505 -7705532 + L1Md_F2 LINE L1 3855 5586 -297 4 1666 8007 50 4 0 chr6 141811505 141812495 -7704542 + L1Md_F2 LINE L1 5587 6580 -2 4 1666 570 306 0 50 chr6 141813296 141813437 -7703600 - RSINE1 SINE B4 -29 136 3 4 1666 600 70 0 0 chr6 141813860 141813946 -7703091 + (TG)n Simple_repeat Simple_repeat 2 87 0 4 1666 317 274 161 57 chr6 141814013 141814261 -7702776 - B4 SINE B4 -18 274 1 4 1666 593 272 6 30 chr6 141815076 141815243 -7701794 - RSINE1 SINE B4 0 165 3 4 1666 388 300 136 12 chr6 141815391 141815553 -7701484 + B3A SINE B2 1 182 -16 4 1666 521 245 97 12 chr6 141815956 141816121 -7700916 - MTEb LTR MaLR 0 379 201 4 1666 1706 256 12 86 chr6 141816149 141816348 -7700689 + RMER19C LTR ERVK 138 331 -280 4 1666 324 0 0 0 chr6 141816348 141816384 -7700653 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1666 1706 256 12 86 chr6 141816384 141816696 -7700341 + RMER19C LTR ERVK 332 610 -1 4 1666 580 230 47 23 chr6 141816696 141816825 -7700212 - MTEb LTR MaLR -163 216 85 4 1666 221 57 29 0 chr6 141816831 141816866 -7700171 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 4 1666 261 0 0 0 chr6 141816883 141816912 -7700125 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1666 3726 276 62 72 chr6 141817614 141818071 -7698966 - Lx5 LINE L1 -151 6899 6455 4 1666 419 0 20 0 chr6 141818071 141818122 -7698915 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1666 3726 237 74 38 chr6 141818122 141819342 -7697695 - Lx5 LINE L1 -596 6454 5205 4 1667 306 0 0 0 chr6 141819996 141820030 -7697007 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1667 599 256 135 39 chr6 141820052 141820312 -7696725 - B4A SINE B4 -2 290 6 4 1667 556 323 15 20 chr6 141820955 141821154 -7695883 + B3A SINE B2 1 198 0 4 1667 5220 214 38 11 chr6 141821724 141822919 -7694118 + ORR1B1-int LTR MaLR 282 1508 -1 4 1667 1872 182 70 16 chr6 141822920 141823294 -7693743 + ORR1B1 LTR MaLR 1 394 0 4 1667 278 270 62 111 chr6 141824511 141824740 -7692297 + RLTR41 LTR ERV1 251 500 -7 4 1667 238 47 70 0 chr6 141824777 141824820 -7692217 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 4 1667 3758 199 80 112 chr6 141825320 141826534 -7690503 + MMVL30-int LTR ERV1 772 1961 -1737 4 1667 603 0 0 0 chr6 141826534 141826601 -7690436 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1667 474 18 0 0 chr6 141826601 141826655 -7690382 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1667 3758 240 81 85 chr6 141826655 141827140 -7689897 + MMVL30-int LTR ERV1 1962 2654 -2409 4 1667 542 321 20 25 chr6 141827160 141827500 -7689537 + MMVL30-int LTR ERV1 4020 4450 -3156 4 1667 309 141 0 72 chr6 141827838 141827907 -7689130 + MMVL30-int LTR ERV1 2875 2938 -760 4 1667 260 123 0 50 chr6 141828881 141828894 -7688143 + (TAAA)n Simple_repeat Simple_repeat 2 13 0 5 1667 1079 102 0 0 chr6 141828894 141829041 -7687996 + B1_Mus1 SINE Alu 2 148 0 5 1667 260 123 0 50 chr6 141829041 141829087 -7687950 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 5 1667 483 328 92 5 chr6 141829104 141829300 -7687737 - B4 SINE B4 -79 213 1 5 1667 351 0 0 0 chr6 141829367 141829406 -7687631 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1667 486 0 0 0 chr6 141829737 141829791 -7687246 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1667 293 47 0 23 chr6 141829804 141829848 -7687189 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 5 1667 211 200 0 0 chr6 141829848 141829888 -7687149 + (CATA)n Simple_repeat Simple_repeat 3 42 0 5 1667 307 269 182 22 chr6 141829992 141830129 -7686908 + HAL1-3A_ME LINE L1 2284 2442 -416 5 1667 404 48 32 0 chr6 141830309 141830371 -7686666 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 5 1667 28 61 0 0 chr6 141830585 141830634 -7686403 + AT_rich Low_complexity Low_complexity 1 49 0 5 1667 186 43 0 0 chr6 141830636 141830659 -7686378 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 1667 352 216 218 40 chr6 141830687 141830788 -7686249 + B3 SINE B2 1 119 -97 5 1667 2549 36 0 3 chr6 141830853 141831162 -7685875 - L1Md_F3 LINE L1 -1 6583 6276 5 1667 1662 181 59 17 chr6 141831241 141831596 -7685441 + L1VL4 LINE L1 414 783 -5519 5 1667 12736 77 1 2 chr6 141831625 141833412 -7683625 - L1Md_F2 LINE L1 -192 5691 3907 5 1667 6834 58 0 5 chr6 141833411 141834278 -7682759 + L1Md_F2 LINE L1 5720 6582 0 5 1667 7394 112 13 2 chr6 141834332 141836085 -7680952 + L1_Mus3 LINE L1 4859 6637 -1 5 1667 25 0 0 0 chr6 141836086 141836111 -7680926 + AT_rich Low_complexity Low_complexity 1 25 0 5 1667 1001 245 10 0 chr6 141836554 141836762 -7680275 + B3 SINE B2 1 210 -6 5 1667 721 275 20 54 chr6 141836913 141837117 -7679920 - B3 SINE B2 -19 197 1 5 1667 2085 209 88 4 chr6 141837124 141837599 -7679438 + RLTR11A LTR ERVK 14 528 0 5 1667 595 241 17 40 chr6 141838585 141838758 -7678279 - RLTR28B LTR ERVL -292 189 21 5 1667 299 267 25 104 chr6 141839153 141839316 -7677721 - RMER17C-int LTR ERVK -405 2833 2684 5 1667 2339 24 10 10 chr6 141839346 141839636 -7677401 + L1Md_F2 LINE L1 6293 6582 0 5 1667 2682 232 29 71 chr6 141839829 141840965 -7676072 - Lx4B LINE L1 -15 6982 5934 5 1667 808 320 62 30 chr6 141841414 141841690 -7675347 - RMER20B LTR ERVK -2 514 241 5 1667 1787 152 155 3 chr6 141841690 141842032 -7675005 - ORR1B1 LTR MaLR 0 394 1 5 1667 808 288 78 15 chr6 141842032 141842142 -7674895 - RMER20B LTR ERVK -387 240 131 5 1667 699 75 0 0 chr6 141842460 141842554 -7674483 + (GA)n Simple_repeat Simple_repeat 1 94 0 5 1667 648 0 0 0 chr6 141842928 141843000 -7674037 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1667 464 266 38 75 chr6 141844001 141844241 -7672796 - MYSERV6-int LTR ERVK -1460 7499 7269 5 1667 210 37 0 0 chr6 141844430 141844457 -7672580 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1667 1184 78 0 12 chr6 141844486 141844654 -7672383 + L1_Mus2 LINE L1 6401 6566 0 5 1667 351 298 100 50 chr6 141845325 141845358 -7671679 + MTEa LTR MaLR 1 37 -322 5 1667 1039 82 0 0 chr6 141845358 141845493 -7671544 + B1_Mus2 SINE Alu 1 135 -12 5 1667 1039 0 8 16 chr6 141845493 141845621 -7671416 + (CAAAA)n Simple_repeat Simple_repeat 4 130 0 5 1667 351 298 100 50 chr6 141845621 141845766 -7671271 + MTEa LTR MaLR 38 188 -171 5 1667 352 277 32 0 chr6 141845786 141845880 -7671157 + MTEa LTR MaLR 266 362 -17 5 1667 621 0 0 0 chr6 141846203 141846272 -7670765 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1667 342 0 0 0 chr6 141846272 141846309 -7670728 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1667 3673 137 29 40 chr6 141846452 141847101 -7669936 + RLTR26 LTR ERVK 1 642 0 5 1667 228 216 0 0 chr6 141847136 141847187 -7669850 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1667 3497 106 48 11 chr6 141847409 141847427 -7669610 + LTRIS2 LTR ERV1 1 18 -546 5 1667 243 0 0 0 chr6 141847427 141847454 -7669583 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1667 3497 106 48 11 chr6 141847454 141847979 -7669058 + LTRIS2 LTR ERV1 19 564 0 5 1667 1429 259 31 8 chr6 141848098 141848457 -7668580 - ORR1D1 LTR MaLR -4 370 4 5 1667 359 309 6 47 chr6 141848508 141848629 -7668408 - Lx6 LINE L1 -27 7433 7315 5 1667 1131 49 0 0 chr6 141848629 141848771 -7668266 + (GGGAA)n Simple_repeat Simple_repeat 5 146 0 5 1667 359 309 6 47 chr6 141848771 141848819 -7668218 - Lx6 LINE L1 -146 7314 7271 5 1667 7797 101 12 7 chr6 141848854 141849767 -7667270 - L1_Mus3 LINE L1 -1 6637 5719 5 1667 3299 51 2 0 chr6 141849767 141850162 -7666875 - MTA_Mm LTR MaLR 0 396 1 5 1667 7797 149 2 79 chr6 141850162 141851620 -7665417 - L1_Mus3 LINE L1 -165 5718 4379 5 1667 19218 140 11 17 chr6 141851630 141855656 -7661381 + L1VL4 LINE L1 718 4718 -1165 5 1667 1191 272 38 25 chr6 141855757 141856122 -7660915 - ORR1D2 LTR MaLR 0 370 1 5 1667 318 26 0 0 chr6 141856197 141856236 -7660801 + (TCTCTG)n Simple_repeat Simple_repeat 3 41 0 5 1667 42 57 0 0 chr6 141856386 141856456 -7660581 + AT_rich Low_complexity Low_complexity 1 70 0 5 1667 219 300 0 91 chr6 141856641 141856707 -7660330 - ID4_ SINE ID -18 65 6 5 1667 494 330 62 35 chr6 141857862 141858156 -7658881 + MTEb LTR MaLR 2 309 -70 5 1667 301 333 30 20 chr6 141858707 141858808 -7658229 + MTE2a LTR MaLR 59 160 -219 5 1667 249 311 0 0 chr6 141859010 141859071 -7657966 - MTE2a LTR MaLR -80 299 239 5 1667 681 258 144 92 chr6 141861013 141861457 -7655580 + RMER5 LTR ERV1 56 522 -12 5 1667 1439 178 41 93 chr6 141861478 141861843 -7655194 + ORR1B1 LTR MaLR 41 386 -8 5 1667 229 169 34 0 chr6 141862018 141862077 -7654960 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1667 207 0 0 0 chr6 141862422 141862445 -7654592 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 5 1667 472 309 29 29 chr6 141862958 141863098 -7653939 + RSINE1 SINE B4 3 142 -23 5 1667 432 0 0 0 chr6 141863109 141863157 -7653880 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1667 21 82 0 0 chr6 141863176 141863225 -7653812 + AT_rich Low_complexity Low_complexity 1 49 0 5 1667 302 47 15 59 chr6 141863230 141863298 -7653739 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 5 1667 890 268 29 61 chr6 141863400 141863469 -7653568 - 7SK RNA RNA -93 238 173 5 1667 1310 36 24 0 chr6 141863469 141863637 -7653400 + L1Md_F3 LINE L1 6399 6570 -14 5 1667 890 268 29 61 chr6 141863637 141863813 -7653224 - 7SK RNA RNA -159 172 1 5 1667 225 132 0 0 chr6 141864049 141864087 -7652950 + (GGAGA)n Simple_repeat Simple_repeat 2 39 0 5 1667 274 349 0 38 chr6 141864090 141864131 -7652906 + G-rich Low_complexity Low_complexity 2 39 0 5 1667 498 33 0 0 chr6 141864131 141864191 -7652846 + (GAGAA)n Simple_repeat Simple_repeat 3 62 0 5 1667 350 319 0 25 chr6 141864191 141864280 -7652757 + G-rich Low_complexity Low_complexity 1 86 0 5 1667 683 68 21 83 chr6 141864280 141864472 -7652565 + GA-rich Low_complexity Low_complexity 1 180 0 5 1667 349 109 42 42 chr6 141864484 141864580 -7652457 + GA-rich Low_complexity Low_complexity 5 100 0 5 1667 6709 102 24 8 chr6 141864582 141865582 -7651455 + RLTR13D2 LTR ERVK 1 1016 -7 5 1667 611 145 4 76 chr6 141865588 141865868 -7651169 + GA-rich Low_complexity Low_complexity 1 259 0 5 1667 21 0 0 0 chr6 141866103 141866124 -7650913 + AT_rich Low_complexity Low_complexity 1 21 0 5 1667 238 297 0 108 chr6 141866577 141866660 -7650377 + RSINE1 SINE B4 13 86 -206 5 1667 225 0 0 0 chr6 141867366 141867391 -7649646 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 1667 247 259 17 0 chr6 141867538 141867596 -7649441 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1667 341 316 57 44 chr6 141867597 141867756 -7649281 - RSINE1 SINE B4 0 165 5 5 1667 2992 58 0 10 chr6 141867770 141868154 -7648883 - L1_Mus1 LINE L1 0 6567 6188 5 1667 345 360 30 6 chr6 141868438 141868603 -7648434 + B4A SINE B4 1 169 -123 5 1667 2917 229 68 39 chr6 141868593 141869487 -7647550 + RMER13A LTR ERVK 5 908 0 5 1667 247 371 90 8 chr6 141869489 141869622 -7647415 + B4 SINE B4 145 288 -4 5 1667 270 0 0 0 chr6 141869622 141869652 -7647385 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1667 393 22 0 0 chr6 141869655 141869701 -7647336 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 5 1667 271 244 429 7 chr6 141869870 141870019 -7647018 - B3 SINE B2 -3 213 3 5 1667 594 0 0 0 chr6 141870548 141870614 -7646423 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1667 1167 84 6 11 chr6 141872109 141872289 -7644748 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 5 1667 825 65 0 0 chr6 141872289 141872397 -7644640 + (GAAA)n Simple_repeat Simple_repeat 1 108 0 5 1667 258 238 47 16 chr6 141874420 141874484 -7642553 - ID_B1 SINE B4 -71 153 88 5 1667 958 58 43 14 chr6 141874633 141874773 -7642264 + L1Md_F2 LINE L1 6428 6571 -11 5 1667 397 239 9 86 chr6 141874910 141875015 -7642022 + B3A SINE B2 97 193 -5 5 1667 3454 240 60 12 chr6 141875062 141876009 -7641028 + Lx5 LINE L1 6052 7044 -6 5 1667 1766 178 47 3 chr6 141876405 141876748 -7640289 + RLTR15 LTR ERVK 2 359 0 5 1667 1186 153 155 27 chr6 141877408 141877744 -7639293 + MYSERV6-int LTR ERVK 6406 6784 -2175 5 1667 303 267 29 58 chr6 141877748 141877887 -7639150 + MYSERV-int LTR ERVK 4720 4854 -507 5 1667 433 284 16 65 chr6 141878083 141878207 -7638830 + B1_Mus1 SINE Alu 19 136 -12 5 1667 1790 247 17 41 chr6 141878434 141879017 -7638020 + MYSERV16_I-int LTR ERVK 4 572 -1754 5 1667 1232 186 75 20 chr6 141879092 141879344 -7637693 + Lx4A LINE L1 6784 7049 -9 5 1667 315 0 0 0 chr6 141879346 141879381 -7637656 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 5 1667 325 158 0 17 chr6 141879382 141879440 -7637597 + GA-rich Low_complexity Low_complexity 4 60 0 5 1667 821 194 0 6 chr6 141879441 141879524 -7637513 + polypurine Low_complexity Low_complexity 3 85 0 5 1667 1250 83 0 11 chr6 141879524 141879706 -7637331 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1667 821 194 0 6 chr6 141879706 141879798 -7637239 + polypurine Low_complexity Low_complexity 86 177 0 5 1667 1185 99 15 45 chr6 141879809 141880010 -7637027 + B2_Mm2 SINE B2 1 195 0 6 1667 1173 252 17 3 chr6 141880016 141880318 -7636719 + MYSERV-int LTR ERVK 5967 6272 -278 5 1667 270 285 35 0 chr6 141880321 141880465 -7636572 + MYSERV6-int LTR ERVK 8756 8904 -55 5 1667 21 57 0 0 chr6 141880475 141880510 -7636527 + AT_rich Low_complexity Low_complexity 1 35 0 6 1667 1605 202 8 48 chr6 141880542 141880916 -7636121 + RLTR15 LTR ERVK 1 359 0 6 1667 214 260 150 38 chr6 141881130 141881210 -7635827 - BC1_Mm scRNA scRNA -53 99 11 6 1667 254 228 10 52 chr6 141881266 141881363 -7635674 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 6 1667 705 265 80 159 chr6 141881848 141882238 -7634799 + MTE2a LTR MaLR 7 365 -14 6 1667 921 189 114 0 chr6 141883581 141883782 -7633255 - URR1B DNA MER1_type -1 224 1 6 1667 8147 207 18 15 chr6 141885136 141886989 -7630048 + MYSERV6-int LTR ERVK 2571 4430 -4529 6 1667 640 252 94 65 chr6 141886997 141887342 -7629695 + MYSERV16_I-int LTR ERVK 462 810 -1516 6 1667 536 0 16 0 chr6 141887342 141887406 -7629631 + (CAAG)n Simple_repeat Simple_repeat 3 67 0 6 1667 640 252 94 65 chr6 141887406 141887463 -7629574 + MYSERV16_I-int LTR ERVK 811 876 -1450 6 1667 420 192 12 0 chr6 141887464 141887553 -7629484 + B1F SINE Alu 59 148 -1 6 1667 779 281 10 5 chr6 141887561 141887761 -7629276 + B3 SINE B2 2 202 -14 6 1667 258 288 0 36 chr6 141887764 141887847 -7629190 + GA-rich Low_complexity Low_complexity 5 84 0 6 1667 181 150 49 24 chr6 141888243 141888284 -7628753 + L4 LINE RTE 1195 1236 -793 6 1667 326 352 27 14 chr6 141889176 141889323 -7627714 + B1F SINE Alu 1 149 0 6 1667 26 50 0 0 chr6 141890189 141890229 -7626808 + AT_rich Low_complexity Low_complexity 1 40 0 6 1667 350 320 139 25 chr6 141890409 141890733 -7626304 + Charlie4a DNA MER1_type 82 442 -66 6 1667 1195 196 191 6 chr6 141893060 141893379 -7623658 + ORR1C1 LTR MaLR 1 378 0 6 1667 746 297 19 5 chr6 141893485 141893698 -7623339 + B3 SINE B2 1 216 0 6 1667 300 295 48 16 chr6 141893935 141894059 -7622978 - MIR SINE MIR -100 162 35 6 1667 992 218 23 5 chr6 141894661 141894882 -7622155 - URR1A DNA MER1_type -1 225 1 6 1667 1589 243 29 12 chr6 141895293 141895705 -7621332 - MTD LTR MaLR 0 419 1 6 1667 644 374 17 28 chr6 141895711 141896000 -7621037 + B4A SINE B4 7 292 0 6 1667 537 16 0 0 chr6 141896036 141896098 -7620939 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1667 201 132 0 0 chr6 141896163 141896201 -7620836 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1667 688 46 0 0 chr6 141897050 141897137 -7619900 - L1_Mus4 LINE L1 -236 6400 6314 6 1667 1856 108 0 0 chr6 141897130 141897389 -7619648 - Lx2 LINE L1 -1127 5870 5612 6 1667 229 140 34 34 chr6 141897647 141897706 -7619331 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 6 1667 4951 152 24 4 chr6 141897717 141899254 -7617783 + L1VL2 LINE L1 53 1765 -1850 6 1667 219 69 0 0 chr6 141899263 141899292 -7617745 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1667 1032 103 0 0 chr6 141899292 141899428 -7617609 - B1_Mus2 SINE Alu -10 137 2 6 1667 1193 81 25 70 chr6 141899466 141899666 -7617371 - B2_Mm2 SINE B2 -3 192 2 6 1667 29634 102 59 6 chr6 141899719 141905676 -7611361 - L1Md_F2 LINE L1 -12 6570 273 6 1667 10915 140 7 4 chr6 141905676 141907038 -7609999 + L1_Mm LINE L1 2057 3424 -2459 6 1667 190 56 56 0 chr6 141907038 141907074 -7609963 + (TAA)n Simple_repeat Simple_repeat 1 38 0 6 1667 10915 140 7 4 chr6 141907074 141907566 -7609471 + L1_Mm LINE L1 3425 3915 -1968 6 1667 1495 167 31 24 chr6 141907566 141907860 -7609177 + RMER6A LTR ERVK 459 754 -2 6 1667 2123 216 29 14 chr6 141907862 141908401 -7608636 + RodERV21-int LTR ERV1 3831 4808 -183 6 1667 349 313 0 39 chr6 141908424 141908527 -7608510 + RMER4B LTR ERVK 350 448 -137 6 1667 21 36 0 0 chr6 141908747 141908775 -7608262 + AT_rich Low_complexity Low_complexity 1 28 0 6 1667 4299 109 26 0 chr6 141909693 141910309 -7606728 + L1_Mus3 LINE L1 5995 6626 -12 6 1667 1618 32 0 0 chr6 141911371 141911559 -7605478 + B2_Mm1a SINE B2 1 188 -5 6 1667 504 297 64 39 chr6 141911712 141911915 -7605122 + B3 SINE B2 8 215 -1 6 1667 556 244 102 98 chr6 141912407 141912715 -7604322 - RLTR28 LTR ERVL -138 343 1 6 1667 319 246 58 58 chr6 141913019 141913209 -7603828 - RMER17C-int LTR ERVK -365 2873 2684 6 1667 21 0 0 0 chr6 141913232 141913253 -7603784 + AT_rich Low_complexity Low_complexity 1 21 0 6 1667 180 321 0 0 chr6 141913341 141913394 -7603643 - L4 LINE RTE -1863 166 114 6 1667 200 34 0 33 chr6 141913503 141913533 -7603504 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 6 1667 9722 212 74 56 chr6 141913545 141918298 -7598739 - Lx2B LINE L1 -26 6950 2062 6 1667 423 333 62 7 chr6 141918298 141918443 -7598594 - B3A SINE B2 -39 159 7 6 1667 192 77 0 0 chr6 141918898 141918924 -7598113 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 6 1667 258 294 14 14 chr6 141918929 141918998 -7598039 - ID4 SINE ID -3 80 12 6 1667 283 57 0 0 chr6 141919428 141919463 -7597574 + U2 snRNA snRNA 1 35 -153 6 1667 3367 42 0 0 chr6 141919680 141920085 -7596952 - L1Md_T LINE L1 -224 6358 5954 6 1667 1768 36 13 13 chr6 141920085 141920312 -7596725 + L1Md_F3 LINE L1 6356 6582 -2 6 1667 23 0 0 0 chr6 141920312 141920335 -7596702 + AT_rich Low_complexity Low_complexity 1 23 0 6 1667 421 292 43 21 chr6 141921148 141921288 -7595749 + MTEb LTR MaLR 3 145 -234 6 1667 259 286 0 14 chr6 141921712 141921783 -7595254 - B2_Mm2 SINE B2 -125 70 1 6 1667 22 0 0 0 chr6 141921965 141921987 -7595050 + AT_rich Low_complexity Low_complexity 1 22 0 6 1667 405 360 46 36 chr6 141922043 141922239 -7594798 + MTD LTR MaLR 1 198 -221 6 1667 756 206 22 44 chr6 141922239 141922422 -7594615 + RLTR22_Mur LTR ERVK 1 179 -1669 6 1667 2338 86 14 22 chr6 141922413 141922772 -7594265 + RLTR22_Mur LTR ERVK 477 832 -1016 6 1667 396 296 128 72 chr6 141922937 141923243 -7593794 + RMER12 LTR ERVK 998 1320 -2 6 1667 735 44 0 0 chr6 141923243 141923334 -7593703 + (CA)n Simple_repeat Simple_repeat 1 91 0 6 1667 3205 167 118 7 chr6 141923334 141924006 -7593031 + RLTR22_Mur LTR ERVK 181 927 -921 6 1667 1792 138 62 26 chr6 141924006 141924310 -7592727 + ORR1A2 LTR MaLR 1 315 -12 6 1667 6961 164 82 25 chr6 141924314 141925949 -7591088 + ORR1A2-int LTR MaLR 1 1792 0 6 1667 2291 113 3 6 chr6 141925949 141926277 -7590760 + ORR1A2 LTR MaLR 1 327 0 6 1667 5242 132 41 22 chr6 141926280 141926353 -7590684 + RLTR22_Mur LTR ERVK 932 1000 -848 6 1667 3070 35 50 11 chr6 141926353 141926734 -7590303 + MTA_Mm LTR MaLR 1 396 0 6 1667 5242 132 41 22 chr6 141926734 141927560 -7589477 + RLTR22_Mur LTR ERVK 1001 1848 0 6 1667 719 221 7 13 chr6 141927580 141927731 -7589306 + B1_Mur4 SINE Alu 1 150 0 6 1667 437 276 32 8 chr6 141927856 141927980 -7589057 - MTE2a LTR MaLR -12 367 241 6 1667 916 58 21 28 chr6 141929203 141929345 -7587692 + L1Md_F2 LINE L1 6442 6582 0 6 1667 987 288 120 25 chr6 141930053 141930487 -7586550 + RMER5 LTR ERV1 60 534 0 6 1667 219 241 19 0 chr6 141930787 141930841 -7586196 + RSINE1 SINE B4 76 130 -35 6 1667 319 314 36 36 chr6 141930877 141931016 -7586021 + MTEb LTR MaLR 215 353 -26 6 1667 448 255 65 39 chr6 141931459 141931614 -7585423 + RSINE1 SINE B4 4 162 -3 6 1667 602 274 56 56 chr6 141931779 141932011 -7585026 - 7SK RNA RNA -96 235 4 6 1667 300 265 76 93 chr6 141932170 141932321 -7584716 + RLTR20C LTR ERVK 77 217 -361 6 1667 1732 212 17 8 chr6 141932727 141933083 -7583954 + Lx5 LINE L1 6564 6901 -149 6 1667 440 336 15 8 chr6 141934672 141934804 -7582233 - RSINE1 SINE B4 -21 144 12 6 1667 22 56 0 0 chr6 141934817 141934853 -7582184 + AT_rich Low_complexity Low_complexity 1 36 0 6 1667 49 18 0 0 chr6 141934968 141935024 -7582013 + AT_rich Low_complexity Low_complexity 1 56 0 6 1667 574 290 67 30 chr6 141935209 141935479 -7581558 + B4 SINE B4 1 280 -12 6 1667 473 144 11 0 chr6 141935504 141935594 -7581443 + (CATA)n Simple_repeat Simple_repeat 4 94 0 6 1667 180 152 0 0 chr6 141935599 141935632 -7581405 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 6 1667 358 301 158 13 chr6 141935767 141935925 -7581112 - B3A SINE B2 -16 182 2 6 1667 33 25 0 0 chr6 141936071 141936111 -7580926 + AT_rich Low_complexity Low_complexity 1 40 0 6 1667 351 0 0 0 chr6 141936454 141936493 -7580544 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1667 303 154 0 0 chr6 141936710 141936775 -7580262 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 6 1667 197 33 33 0 chr6 141936776 141936806 -7580231 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1667 365 322 102 76 chr6 141936847 141937072 -7579965 - B4A SINE B4 -60 232 2 6 1667 201 314 42 14 chr6 141940426 141940497 -7576540 + L4 LINE RTE 1751 1823 -206 6 1667 515 294 9 76 chr6 141941509 141941719 -7575318 + B3A SINE B2 2 197 -1 6 1667 360 0 0 0 chr6 141942310 141942350 -7574687 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1667 245 247 140 0 chr6 141942386 141942460 -7574577 - ID4 SINE ID -63 89 7 6 1667 284 307 128 7 chr6 141943483 141943624 -7573413 + RSINE1 SINE B4 1 158 -7 6 1667 444 37 0 0 chr6 141943624 141943678 -7573359 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1667 4479 97 5 3 chr6 141943689 141944309 -7572728 + L1_Mus2 LINE L1 5946 6566 0 6 1667 15430 152 10 6 chr6 141944310 141948378 -7568659 + Lx2 LINE L1 2899 6991 -6 6 1667 594 0 0 0 chr6 141949453 141949519 -7567518 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 1667 312 286 0 0 chr6 141949694 141949785 -7567252 + Lx4B LINE L1 6295 6385 -673 6 1667 1123 316 64 27 chr6 141949787 141950349 -7566688 + Lx6 LINE L1 6483 7434 -26 6 1667 677 307 73 0 chr6 141950429 141950621 -7566416 + ID_B1 SINE B4 6 211 -13 6 1667 513 0 0 0 chr6 141950621 141950678 -7566359 + (GAAA)n Simple_repeat Simple_repeat 4 60 0 6 1667 918 92 0 0 chr6 141950678 141950808 -7566229 + (GGGA)n Simple_repeat Simple_repeat 3 132 0 7 1667 224 242 32 0 chr6 141950864 141950926 -7566111 + RSINE1 SINE B4 61 124 -41 7 1668 240 59 0 0 chr6 141952582 141952616 -7564421 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1668 393 239 34 34 chr6 141952689 141952806 -7564231 + B1F1 SINE Alu 1 117 -32 7 1668 358 241 8 87 chr6 141952693 141952820 -7564217 + ID_B1 SINE B4 86 202 -22 7 1668 3953 149 34 22 chr6 141952820 141953741 -7563296 + RMER17C-int LTR ERVK 1721 2562 -676 7 1668 222 137 39 19 chr6 141953767 141953819 -7563218 + T-rich Low_complexity Low_complexity 3 55 0 7 1668 3512 120 80 20 chr6 141953820 141954125 -7562912 + RMER17C-int LTR ERVK 2562 2872 -366 7 1668 507 33 0 0 chr6 141954125 141954186 -7562851 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1668 3512 120 80 20 chr6 141954186 141954519 -7562518 + RMER17C-int LTR ERVK 2873 3237 -1 7 1668 1534 190 36 50 chr6 141954519 141954935 -7562102 + RMER17C LTR ERVK 1 410 0 7 1668 247 284 75 0 chr6 141954977 141955044 -7561993 + ID4_ SINE ID 1 72 -11 7 1668 255 317 0 16 chr6 141954991 141955052 -7561985 + tRNA-Ala-GCA tRNA tRNA 14 73 -2 7 1668 364 324 57 0 chr6 141955862 141956038 -7560999 + Charlie4a DNA MER1_type 79 264 -244 7 1668 878 271 31 49 chr6 141956339 141956626 -7560411 + RMER12 LTR ERVK 1041 1322 0 7 1668 21 36 0 0 chr6 141957091 141957119 -7559918 + AT_rich Low_complexity Low_complexity 1 28 0 7 1668 591 332 17 62 chr6 141958669 141958910 -7558127 - B4 SINE B4 -62 230 1 7 1668 23 33 0 0 chr6 141959778 141959808 -7557229 + AT_rich Low_complexity Low_complexity 1 30 0 7 1668 237 384 14 57 chr6 141960086 141960296 -7556741 - Lx5 LINE L1 -18 7032 6832 7 1668 1293 231 23 109 chr6 141960366 141960410 -7556627 - MTD LTR MaLR -1 420 378 7 1668 1139 63 0 0 chr6 141960410 141960552 -7556485 + B1_Mus1 SINE Alu 1 142 -6 7 1668 717 12 0 0 chr6 141960559 141960641 -7556396 + (GAAAA)n Simple_repeat Simple_repeat 4 85 0 7 1668 1395 208 24 27 chr6 141960641 141960785 -7556252 - MTD LTR MaLR -31 388 253 7 1668 2759 136 46 18 chr6 141960785 141961219 -7555818 + RLTR41 LTR ERV1 1 446 0 7 1668 1395 232 44 26 chr6 141961219 141961432 -7555605 - MTD LTR MaLR -167 252 1 7 1668 338 369 49 0 chr6 141961433 141961555 -7555482 + B4A SINE B4 5 132 -160 7 1668 302 375 44 38 chr6 141962083 141962241 -7554796 + B4A SINE B4 134 292 0 7 1668 214 191 0 73 chr6 141962267 141962335 -7554702 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 7 1668 4878 143 20 22 chr6 141962374 141963252 -7553785 + L1_Mus4 LINE L1 5754 6630 -6 7 1668 2605 188 171 26 chr6 141963309 141963953 -7553084 - RMER19A LTR ERVK 0 737 1 7 1668 3926 186 74 12 chr6 141964192 141965024 -7552013 + Lx6 LINE L1 4905 5760 -120 7 1668 1071 62 0 0 chr6 141965024 141965154 -7551883 + B1_Mus2 SINE Alu 5 134 -13 7 1668 438 69 0 0 chr6 141965155 141965213 -7551824 + (TA)n Simple_repeat Simple_repeat 1 58 0 7 1668 3926 201 94 26 chr6 141965213 141965497 -7551540 + Lx6 LINE L1 5761 6089 -1371 7 1668 958 193 215 6 chr6 141965497 141965811 -7551226 - RLTR17 LTR ERVK 0 692 313 7 1668 3650 92 2 0 chr6 141965812 141966345 -7550692 - L1_Mm LINE L1 -637 5246 4713 7 1668 4610 52 0 0 chr6 141966345 141966905 -7550132 + L1_Mus1 LINE L1 6008 6567 0 7 1668 1580 166 69 19 chr6 141966918 141967237 -7549800 - RLTR17 LTR ERVK -357 335 1 7 1668 1126 281 135 14 chr6 141967237 141968117 -7548920 + Lx6 LINE L1 6083 7315 -145 7 1668 4513 145 16 14 chr6 141968117 141968852 -7548185 + RMER19A LTR ERVK 1 737 0 7 1668 206 125 0 20 chr6 141968858 141968907 -7548130 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 7 1668 374 116 0 28 chr6 141969003 141969074 -7547963 + (TAAA)n Simple_repeat Simple_repeat 3 71 0 7 1668 2838 135 79 0 chr6 141969641 141970122 -7546915 + Lx3A LINE L1 6456 6974 -7 7 1668 440 35 0 17 chr6 141970142 141970201 -7546836 + (GAAAA)n Simple_repeat Simple_repeat 3 60 0 7 1668 676 11 11 22 chr6 141970578 141970668 -7546369 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 7 1668 295 286 24 97 chr6 141970792 141970916 -7546121 - L2c LINE L2 -1 3386 3272 7 1668 271 288 0 0 chr6 141971001 141971081 -7545956 + L1VL1 LINE L1 196 275 -6147 7 1668 26396 124 7 9 chr6 141971225 141976142 -7540895 + L1Md_F LINE L1 675 5581 -302 7 1668 931 200 16 26 chr6 141976142 141976332 -7540705 - RLTR13D5 LTR ERVK 0 1023 836 7 1668 868 63 48 0 chr6 141976339 141976465 -7540572 + L1_Mus2 LINE L1 6428 6559 -7 7 1668 365 348 39 0 chr6 141977286 141977452 -7539585 - MIRb SINE MIR -68 200 20 7 1668 439 293 40 20 chr6 141977619 141977769 -7539268 + B3A SINE B2 22 174 -24 7 1668 693 92 0 0 chr6 141977798 141977896 -7539141 + (GGGA)n Simple_repeat Simple_repeat 3 100 0 7 1668 881 92 0 7 chr6 141977896 141978038 -7538999 + (GAAA)n Simple_repeat Simple_repeat 4 145 0 7 1668 336 24 0 0 chr6 141978549 141978590 -7538447 + (CAA)n Simple_repeat Simple_repeat 2 42 0 7 1668 217 349 0 0 chr6 141979163 141979246 -7537791 + (TG)n Simple_repeat Simple_repeat 1 83 0 7 1668 235 362 92 59 chr6 141979704 141980194 -7536843 + Charlie2b DNA MER1_type 1313 1818 -964 7 1668 453 266 160 127 chr6 141980209 141980635 -7536402 - RLTR28B LTR ERVL -41 440 1 7 1668 343 247 83 60 chr6 141980958 141981126 -7535911 - RMER17C-int LTR ERVK -383 2855 2684 7 1668 1172 72 0 11 chr6 141981799 141981981 -7535056 + (GA)n Simple_repeat Simple_repeat 1 180 0 7 1668 1260 212 113 32 chr6 141982574 141982920 -7534117 + ORR1D1 LTR MaLR 1 374 0 7 1668 531 337 22 0 chr6 141984354 141984532 -7532505 - B3A SINE B2 -16 182 1 7 1668 369 0 0 0 chr6 141985370 141985411 -7531626 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1668 2523 168 132 73 chr6 141985412 141985989 -7531048 + RMER19C LTR ERVK 1 611 0 7 1668 602 308 51 0 chr6 141986410 141986566 -7530471 + B3A SINE B2 2 165 -33 7 1668 429 20 0 0 chr6 141986577 141986627 -7530410 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1668 373 297 165 10 chr6 141986881 141987075 -7529962 - Lx8 LINE L1 -133 7340 7117 7 1668 1054 89 1 2 chr6 141987057 141987228 -7529809 + Lx LINE L1 5671 5840 -1133 7 1668 732 95 13 51 chr6 141987228 141987384 -7529653 + Lx LINE L1 6488 6637 -17 7 1668 341 276 30 12 chr6 141987384 141987406 -7529631 + L1MB5 LINE L1 5873 5897 -277 7 1668 523 267 23 8 chr6 141987410 141987515 -7529522 + B3 SINE B2 58 164 -52 7 1668 288 0 0 0 chr6 141987515 141987547 -7529490 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1668 523 267 23 8 chr6 141987547 141987573 -7529464 + B3 SINE B2 165 191 -25 7 1668 3525 111 63 6 chr6 141988126 141988662 -7528375 + RMER2 LTR ERV1 1 567 0 7 1668 332 300 53 8 chr6 141989997 141990128 -7526909 + RLTR6-int LTR ERV1 1554 1690 -6088 7 1668 279 259 16 16 chr6 141990152 141990286 -7526751 + MuLV-int LTR ERV1 1563 1810 -5796 7 1668 386 323 83 12 chr6 141990841 141991095 -7525942 + MuLV-int LTR ERV1 4027 4298 -3308 7 1668 834 197 13 6 chr6 141991164 141991322 -7525715 + RMER13B LTR ERVK 384 542 -366 7 1668 1311 281 32 22 chr6 141991420 141991882 -7525155 + MuLV-int LTR ERV1 4825 5291 -2315 7 1668 3974 112 5 2 chr6 141992325 141992890 -7524147 + RMER2 LTR ERV1 1 567 0 7 1668 31 0 0 0 chr6 141993035 141993066 -7523971 + AT_rich Low_complexity Low_complexity 1 31 0 7 1668 849 243 69 0 chr6 141993072 141993274 -7523763 - B3 SINE B2 0 216 1 7 1668 426 362 22 5 chr6 141993370 141993592 -7523445 + Lx8 LINE L1 7119 7344 -129 7 1668 4353 152 118 72 chr6 141994238 141995217 -7521820 + RLTR13D2 LTR ERVK 1 1023 0 7 1668 549 0 0 0 chr6 141995592 141995653 -7521384 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1668 351 0 0 0 chr6 141996183 141996222 -7520815 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1668 6496 56 5 1 chr6 141996901 141997719 -7519318 - L1Md_F2 LINE L1 0 6582 5762 7 1668 5721 59 14 5 chr6 141997719 141998503 -7518534 - L1Md_F2 LINE L1 -405 5478 4688 7 1668 313 303 142 24 chr6 141998641 141998888 -7518149 - L1M2 LINE L1 -2471 3672 3397 7 1668 232 339 124 48 chr6 141999175 141999361 -7517676 + RLTR25B LTR ERVK 8 207 -821 7 1668 423 185 54 0 chr6 141999891 141999983 -7517054 - ORR1C2 LTR MaLR 0 384 288 7 1668 1185 280 66 66 chr6 142000000 142000394 -7516643 - MTD LTR MaLR -13 406 13 1 1668 365 307 72 20 chr6 142000621 142000774 -7516263 + RMER15 LTR ERVL 372 532 -43 2 1668 21 0 0 0 chr6 142002189 142002210 -7514827 + AT_rich Low_complexity Low_complexity 1 21 0 3 1668 2396 106 2 5 chr6 142002776 142003173 -7513864 - MusHAL1 LINE L1 -627 2085 1690 4 1668 186 71 0 0 chr6 142003175 142003203 -7513834 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1668 15988 84 27 8 chr6 142003203 142006248 -7510789 + Lx3_Mus LINE L1 3477 6580 -429 6 1668 7512 86 9 6 chr6 142006248 142007268 -7509769 - RLTR13D2 LTR ERVK 0 1023 1 7 1668 8329 95 53 22 chr6 142007268 142007672 -7509365 + Lx3_Mus LINE L1 6581 6998 -11 6 1668 36334 43 1 3 chr6 142008134 142014533 -7502504 - L1Md_T LINE L1 0 6585 100 8 1668 303 235 29 58 chr6 142014611 142014715 -7502322 + RLTR25A LTR ERVK 1 101 -1002 9 1668 237 98 22 0 chr6 142014792 142014832 -7502205 - ORR1D1 LTR MaLR -323 44 1 1 1668 36471 41 0 3 chr6 142015371 142020795 -7496242 - L1Md_T LINE L1 -2 6580 1170 1 1668 4852 146 69 75 chr6 142020801 142021915 -7495122 - L1Md_T LINE L1 -5411 1205 99 1 1668 564 244 0 6 chr6 142021916 142022073 -7494964 - L1Md_F LINE L1 -6316 203 48 1 1668 392 240 19 0 chr6 142022112 142022216 -7494821 - RLTR19-int LTR ERVK -2457 3680 3575 1 1668 1722 195 17 17 chr6 142022238 142022728 -7494309 - ORR1B1 LTR MaLR -3 391 8 1 1668 254 164 0 89 chr6 142022729 142022808 -7494229 - MusHAL1 LINE L1 -3041 519 461 1 1668 1892 86 11 4 chr6 142022813 142023080 -7493957 + L1_Mus4 LINE L1 6361 6629 -7 1 1668 483 18 0 0 chr6 142023613 142023669 -7493368 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1668 517 340 20 0 chr6 142023736 142023886 -7493151 - B3A SINE B2 -36 162 10 1 1668 6936 83 3 11 chr6 142024431 142025521 -7491516 - L1_Mus2 LINE L1 0 6566 5486 1 1668 967 271 80 0 chr6 142025623 142025874 -7491163 - ORR1D2 LTR MaLR -11 359 89 2 1668 3139 69 0 0 chr6 142025874 142026347 -7490690 + L1_Mus1 LINE L1 5536 6008 -558 2 1668 34473 44 1 15 chr6 142026352 142031531 -7485506 + L1Md_F2 LINE L1 487 5586 -297 2 1668 7935 55 4 2 chr6 142031532 142032525 -7484512 + L1Md_F2 LINE L1 5588 6582 0 2 1668 3852 45 14 10 chr6 142032525 142033041 -7483996 + L1_Mus1 LINE L1 5998 6515 -52 2 1668 363 339 9 0 chr6 142033043 142033152 -7483885 - ORR1D2 LTR MaLR -260 110 1 2 1668 456 349 13 0 chr6 142033274 142033426 -7483611 - RSINE1 SINE B4 -9 156 3 2 1668 2761 170 27 14 chr6 142033632 142034152 -7482885 + RLTR11A2 LTR ERVK 1 527 0 2 1668 603 287 68 117 chr6 142035322 142035646 -7481391 + MTEb LTR MaLR 2 309 -70 2 1668 25 65 0 0 chr6 142035883 142035929 -7481108 + AT_rich Low_complexity Low_complexity 1 46 0 2 1668 448 278 0 0 chr6 142035975 142036090 -7480947 - B3A SINE B2 -80 118 4 2 1668 21 0 0 0 chr6 142036222 142036243 -7480794 + AT_rich Low_complexity Low_complexity 1 21 0 2 1668 351 337 27 32 chr6 142036359 142036546 -7480491 + MTD LTR MaLR 2 187 -232 2 1668 564 211 68 30 chr6 142036576 142036708 -7480329 + B1_Mus2 SINE Alu 5 141 -6 3 1668 318 288 47 23 chr6 142036828 142036956 -7480081 - MTEb LTR MaLR 0 379 249 3 1668 366 23 0 0 chr6 142036959 142037002 -7480035 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1668 236 366 14 0 chr6 142037735 142037806 -7479231 + 7SLRNA srpRNA srpRNA 80 151 -163 3 1668 21 0 0 0 chr6 142038178 142038199 -7478838 + AT_rich Low_complexity Low_complexity 1 21 0 3 1668 203 180 0 57 chr6 142038455 142038508 -7478529 + A-rich Low_complexity Low_complexity 2 51 0 3 1668 954 303 129 12 chr6 142039011 142039438 -7477599 + RMER5 LTR ERV1 58 534 0 3 1668 305 367 16 16 chr6 142040525 142040647 -7476390 + RSINE1 SINE B4 43 164 -1 3 1668 207 232 0 0 chr6 142040650 142040706 -7476331 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 3 1668 353 309 221 11 chr6 142040860 142041050 -7475987 - 7SK RNA RNA -97 234 5 3 1668 4403 29 2 0 chr6 142041293 142041804 -7475233 - L1Md_F2 LINE L1 -2 6580 6069 4 1668 552 126 0 0 chr6 142041985 142042072 -7474965 + (TA)n Simple_repeat Simple_repeat 2 88 0 4 1668 341 272 77 52 chr6 142042123 142042278 -7474759 + HAL1-3A_ME LINE L1 2282 2440 -418 4 1668 2223 62 0 0 chr6 142042824 142043116 -7473921 + L1Md_F2 LINE L1 5294 5585 -298 4 1668 7964 58 0 0 chr6 142043117 142044101 -7472936 + L1Md_F2 LINE L1 5587 6570 -12 4 1668 271 311 4 55 chr6 142044334 142044462 -7472575 + RSINE1 SINE B4 7 121 -171 4 1668 360 0 0 0 chr6 142044649 142044689 -7472348 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1668 189 74 0 0 chr6 142044997 142045024 -7472013 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4 1668 23 33 0 0 chr6 142045138 142045168 -7471869 + AT_rich Low_complexity Low_complexity 1 30 0 4 1668 1777 239 29 7 chr6 142045265 142045682 -7471355 + Lx5 LINE L1 6611 7036 -14 4 1668 237 180 20 20 chr6 142045795 142045846 -7471191 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1668 482 366 7 13 chr6 142045863 142046018 -7471019 - RSINE1 SINE B4 0 165 12 5 1668 536 135 0 43 chr6 142046044 142046137 -7470900 - B1_Mus2 SINE Alu -6 141 53 5 1668 1346 176 122 11 chr6 142046139 142046538 -7470499 - RMER17C LTR ERVK -518 440 16 5 1668 299 278 0 0 chr6 142046538 142046600 -7470437 - B1_Mur4 SINE Alu -85 63 2 5 1668 497 311 59 22 chr6 142046895 142047165 -7469872 + B4 SINE B4 1 280 -12 5 1668 349 259 0 11 chr6 142047239 142047329 -7469708 + ID_B1 SINE B4 130 218 -6 5 1668 683 267 10 35 chr6 142047376 142047578 -7469459 - B3A SINE B2 0 198 2 5 1668 599 219 7 17 chr6 142048104 142048396 -7468641 + GA-rich Low_complexity Low_complexity 1 288 0 5 1668 411 21 0 0 chr6 142048999 142049047 -7467990 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1668 469 297 103 94 chr6 142049216 142049450 -7467587 - B4A SINE B4 -55 237 2 5 1668 522 0 0 0 chr6 142049622 142049680 -7467357 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1668 239 114 23 0 chr6 142050582 142050626 -7466411 + (CATA)n Simple_repeat Simple_repeat 4 48 0 6 1668 182 343 28 14 chr6 142050921 142050992 -7466045 - MER5A DNA MER1_type -84 105 34 6 1668 19462 109 43 24 chr6 142052124 142056113 -7460924 + L1_Mur1 LINE L1 31 4341 -1545 6 1668 2091 102 40 0 chr6 142056113 142056417 -7460620 + Lx3_Mus LINE L1 6678 6993 -16 6 1668 294 186 42 14 chr6 142058177 142058248 -7458789 - ID_B1 SINE B4 -68 156 84 6 1668 596 277 27 33 chr6 142058454 142058637 -7458400 + B3A SINE B2 1 182 -16 6 1668 356 75 0 0 chr6 142058902 142058955 -7458082 + L1_Mus2 LINE L1 6514 6566 0 6 1668 331 217 0 0 chr6 142061934 142061994 -7455043 + MTE2a LTR MaLR 1 60 -319 6 1668 605 271 0 0 chr6 142062058 142062209 -7454828 - RMER6D LTR ERVK -68 622 472 6 1668 466 234 136 19 chr6 142062225 142062441 -7454596 - Lx4B LINE L1 -47 7011 6741 7 1668 11681 177 36 14 chr6 142062441 142065106 -7451931 - Lx4B LINE L1 -837 6221 3480 7 1668 251 50 0 48 chr6 142065106 142065148 -7451889 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 7 1668 11681 177 45 19 chr6 142065148 142065311 -7451726 - Lx4B LINE L1 -2398 3479 3320 7 1668 31713 83 9 6 chr6 142065307 142070789 -7446248 - L1Md_F2 LINE L1 -12 6570 1080 7 1668 18044 79 36 2 chr6 142070801 142074143 -7442894 + L1_Mm LINE L1 1667 5355 -528 7 1668 4019 48 8 4 chr6 142074143 142074644 -7442393 + L1Md_F3 LINE L1 6081 6583 -1 7 1668 15043 174 108 6 chr6 142074644 142074662 -7442375 + L1_Mm LINE L1 5350 5370 -507 7 1668 4153 146 23 12 chr6 142074655 142075540 -7441497 - L1Md_F LINE L1 -5607 1117 208 7 1668 9050 192 36 5 chr6 142075536 142077928 -7439109 - L1_Mur1 LINE L1 -2539 3347 890 7 1668 2286 182 4 79 chr6 142078269 142078787 -7438250 - RMER6D LTR ERVK -241 479 1 6 1668 2002 193 89 26 chr6 142078793 142079456 -7437581 - RMER6-int LTR ERVK -7 3170 2653 6 1668 26 30 0 0 chr6 142079536 142079569 -7437468 + AT_rich Low_complexity Low_complexity 1 33 0 7 1668 21 0 0 0 chr6 142079741 142079762 -7437275 + AT_rich Low_complexity Low_complexity 1 21 0 7 1668 1067 231 0 0 chr6 142079856 142080081 -7436956 - URR1B DNA MER1_type 0 225 1 7 1668 259 252 225 51 chr6 142080509 142080647 -7436390 + RSINE1 SINE B4 3 164 -1 8 1668 345 282 30 82 chr6 142081900 142082035 -7435002 + RSINE1 SINE B4 4 131 -34 8 208 303 71 0 0 chr6 142082036 142082078 -7434959 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1669 746 58 33 0 chr6 142082100 142082221 -7434816 + (TAGA)n Simple_repeat Simple_repeat 4 128 0 8 1669 495 368 6 0 chr6 142082257 142082423 -7434614 + ID_B1 SINE B4 55 221 -3 8 1669 220 250 62 0 chr6 142082425 142082505 -7434532 + A-rich Low_complexity Low_complexity 2 86 0 8 1669 570 313 35 70 chr6 142083166 142083393 -7433644 + ID_B1 SINE B4 6 224 0 8 1669 38 22 0 0 chr6 142083556 142083601 -7433436 + AT_rich Low_complexity Low_complexity 1 45 0 8 1669 7272 155 26 31 chr6 142084095 142085288 -7431749 + Lx4B LINE L1 5374 6527 -531 8 1669 1678 57 0 0 chr6 142085288 142085497 -7431540 - L1Md_T LINE L1 -3 6579 6371 8 1669 7272 158 45 52 chr6 142085497 142085990 -7431047 + Lx4B LINE L1 6528 7056 -2 8 1669 207 0 0 0 chr6 142086191 142086214 -7430823 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 9 1669 1055 88 0 0 chr6 142086235 142086372 -7430665 + B1_Mus1 SINE Alu 2 138 -10 9 1669 264 30 0 0 chr6 142086372 142086405 -7430632 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 9 1669 477 0 0 0 chr6 142086485 142086538 -7430499 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 9 1669 1901 187 17 14 chr6 142086608 142086960 -7430077 + ORR1B1 LTR MaLR 1 353 -41 9 1669 9378 206 70 24 chr6 142087218 142089198 -7427839 + Lx2B LINE L1 880 2851 -3029 9 1669 4563 146 126 59 chr6 142089198 142090157 -7426880 + RLTR13D2 LTR ERVK 1 1023 0 9 1669 10357 173 152 6 chr6 142090157 142091407 -7425630 + Lx2B LINE L1 2852 4628 -1249 9 1669 207 0 0 0 chr6 142091407 142091430 -7425607 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1669 10357 169 160 5 chr6 142091430 142092504 -7424533 + Lx2B LINE L1 4629 5704 -173 9 1669 234 0 0 0 chr6 142092504 142092530 -7424507 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 9 1669 10357 190 31 22 chr6 142092530 142093830 -7423207 + Lx2B LINE L1 5705 6995 -5 9 1669 580 223 33 39 chr6 142093888 142094069 -7422968 + ORR1B1-int LTR MaLR 784 975 -988 9 1669 212 41 80 20 chr6 142094386 142094436 -7422601 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1669 22 35 0 0 chr6 142094480 142094509 -7422528 + AT_rich Low_complexity Low_complexity 1 29 0 1 1669 7379 98 11 16 chr6 142094509 142095622 -7421415 - Lx3_Mus LINE L1 -8 7001 5895 1 1669 4509 75 48 0 chr6 142095622 142096263 -7420774 + Lx3_Mus LINE L1 5215 5886 0 1 1669 183 271 42 0 chr6 142096665 142096713 -7420324 + L3 LINE CR1 33 82 -4407 1 1669 390 278 115 51 chr6 142097173 142097408 -7419629 + Charlie4a DNA MER1_type 12 261 -247 1 1669 2642 47 89 3 chr6 142097492 142097830 -7419207 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1669 52814 22 16 7 chr6 142097830 142104246 -7412791 + IAPEz-int LTR ERVK 8 6481 0 1 1669 2642 47 89 3 chr6 142104246 142104584 -7412453 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1669 219 234 0 0 chr6 142107154 142107201 -7409836 + T-rich Low_complexity Low_complexity 4 50 0 1 1669 666 348 9 23 chr6 142107323 142107538 -7409499 - B4 SINE B4 -79 213 2 1 1669 775 290 77 14 chr6 142108088 142108441 -7408596 + ORR1C1 LTR MaLR 4 378 0 1 1669 376 331 0 30 chr6 142108556 142108690 -7408347 + B3 SINE B2 1 130 -86 1 1669 24 32 0 0 chr6 142109267 142109298 -7407739 + AT_rich Low_complexity Low_complexity 1 31 0 1 1669 1356 165 4 30 chr6 142109996 142110233 -7406804 - RLTR22_Mur LTR ERVK -21 1827 1597 1 1669 5272 84 55 0 chr6 142110419 142111188 -7405849 - RLTR22_Mus LTR ERVK -997 811 1 1 1669 183 42 0 0 chr6 142111205 142111229 -7405808 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1669 237 261 0 42 chr6 142111247 142111319 -7405718 - MTD LTR MaLR 0 374 306 1 1669 198 0 0 0 chr6 142111341 142111363 -7405674 + (TGG)n Simple_repeat Simple_repeat 1 22 0 1 1669 215 100 48 32 chr6 142111381 142111443 -7405594 + T-rich Low_complexity Low_complexity 2 64 0 1 1669 649 222 29 96 chr6 142111468 142111677 -7405360 - Lx5 LINE L1 -11 7039 6845 1 1669 615 126 45 0 chr6 142111812 142111923 -7405114 + RLTR31B_Mm LTR ERVK 1 116 -441 1 1669 3733 175 62 7 chr6 142112109 142112822 -7404215 + RLTR25A LTR ERVK 156 907 -196 1 1669 1262 231 129 0 chr6 142112833 142113119 -7403918 - MTD LTR MaLR -96 323 1 1 1669 371 399 62 5 chr6 142113119 142113313 -7403724 + B4A SINE B4 4 208 -84 1 1669 2117 192 13 3 chr6 142113313 142113695 -7403342 + ORR1B1 LTR MaLR 1 386 -8 1 1669 304 254 14 40 chr6 142113708 142113782 -7403255 + B4A SINE B4 214 285 -7 1 1669 2371 107 3 0 chr6 142114639 142114965 -7402072 + ORR1A2 LTR MaLR 1 327 0 1 1669 3232 207 147 14 chr6 142114965 142115811 -7401226 + ORR1A2-int LTR MaLR 1 958 -1005 1 1669 317 132 19 0 chr6 142115819 142115872 -7401165 + ORR1A2-int LTR MaLR 896 949 -1014 1 1669 4295 40 82 122 chr6 142115910 142116591 -7400446 + RLTR6_Mm LTR ERV1 1 654 0 1 1669 5223 22 81 0 chr6 142116591 142117312 -7399725 + MMVL30-int LTR ERV1 1 747 -2951 1 1669 282 155 0 65 chr6 142117311 142117373 -7399664 + MMVL30-int LTR ERV1 361 418 -7138 1 1669 262 96 19 0 chr6 142117409 142117461 -7399576 + MMVL30-int LTR ERV1 325 377 -2922 1 1669 8297 117 67 45 chr6 142117801 142120664 -7396373 + MMVL30-int LTR ERV1 772 3698 0 1 1669 4295 40 82 122 chr6 142120664 142121345 -7395692 + RLTR6_Mm LTR ERV1 1 654 0 1 1669 354 175 283 20 chr6 142121345 142121444 -7395593 + ORR1A2 LTR MaLR 250 374 0 1 1669 240 406 39 8 chr6 142122094 142122223 -7394814 + MER20 DNA MER1_type 6 138 -81 1 1669 192 48 47 23 chr6 142122728 142122771 -7394266 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 1669 1019 152 5 16 chr6 142123639 142123833 -7393204 + MMVL30-int LTR ERV1 772 963 -2735 1 1669 804 215 8 78 chr6 142123830 142124087 -7392950 + MMVL30-int LTR ERV1 1212 1450 -2248 1 1669 361 148 0 247 chr6 142124193 142124363 -7392674 + MMVL30-int LTR ERV1 949 1076 -2223 1 1669 301 125 0 0 chr6 142124450 142124506 -7392531 + MMVL30-int LTR ERV1 1456 1511 -2187 1 1669 380 244 7 96 chr6 142124750 142124886 -7392151 + MMVL30-int LTR ERV1 1516 1639 -2059 1 1669 315 241 0 0 chr6 142124895 142124978 -7392059 + GA-rich Low_complexity Low_complexity 3 85 0 1 1669 1162 95 12 9 chr6 142125005 142125341 -7391696 + (GAAA)n Simple_repeat Simple_repeat 1 337 0 1 1669 446 160 37 31 chr6 142125365 142125496 -7391541 + GA-rich Low_complexity Low_complexity 2 132 0 1 1669 908 97 22 22 chr6 142125496 142125676 -7391361 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1669 446 160 37 31 chr6 142125676 142125705 -7391332 + polypurine Low_complexity Low_complexity 133 162 0 1 1669 1111 99 6 6 chr6 142125725 142125898 -7391139 + (GAA)n Simple_repeat Simple_repeat 3 175 0 1 1669 928 77 13 19 chr6 142125899 142126058 -7390979 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 1 1669 17664 47 4 4 chr6 142126068 142128388 -7388649 + L1_Mm LINE L1 3267 5586 -297 1 1669 8042 48 1 9 chr6 142128388 142129390 -7387647 + L1Md_F2 LINE L1 5587 6580 -2 1 1669 17664 80 2 1 chr6 142129390 142130335 -7386702 + L1_Mm LINE L1 4640 5610 -273 1 1669 7950 57 1 0 chr6 142130336 142131332 -7385705 + L1Md_F3 LINE L1 5587 6583 -1 1 1669 558 239 227 51 chr6 142131438 142131751 -7385286 + RLTR9A LTR ERVK 1 368 0 1 1669 382 286 72 52 chr6 142131849 142132196 -7384841 + RLTR22_Mur LTR ERVK 221 576 -1232 1 1669 382 284 27 98 chr6 142132688 142132797 -7384240 + RLTR22_Mur LTR ERVK 596 652 -1196 1 1669 1234 108 21 5 chr6 142132797 142132984 -7384053 - B2_Mm1t SINE B2 -3 190 1 1 1669 382 258 13 154 chr6 142132984 142133153 -7383884 + RLTR22_Mur LTR ERVK 653 796 -1052 1 1669 615 257 54 0 chr6 142133247 142133395 -7383642 - RSINE1 SINE B4 -7 158 3 1 1669 863 203 7 0 chr6 142133523 142133671 -7383366 + B1_Mur2 SINE Alu 1 149 0 1 1669 5203 176 43 36 chr6 142134617 142135624 -7381413 + RLTR13D3 LTR ERVK 101 1114 0 1 1669 748 253 38 77 chr6 142135624 142135677 -7381360 + RMER12 LTR ERVK 994 1041 -281 1 1669 201 39 0 0 chr6 142135677 142135703 -7381334 + (CCCTAA)n Simple_repeat Simple_repeat 1 26 0 1 1669 748 253 38 77 chr6 142135703 142135883 -7381154 + RMER12 LTR ERVK 1042 1218 -104 1 1669 288 274 177 62 chr6 142136353 142136541 -7380496 - Lx8 LINE L1 -43 7430 7217 1 1669 827 10 10 0 chr6 142136541 142136641 -7380396 + (TC)n Simple_repeat Simple_repeat 1 101 0 1 1669 288 274 177 62 chr6 142136641 142136678 -7380359 - Lx8 LINE L1 -257 7216 7180 1 1669 381 188 9 86 chr6 142136678 142136783 -7380254 - B3 SINE B2 -98 97 1 1 1669 478 226 69 0 chr6 142136866 142136968 -7380069 + B3 SINE B2 78 186 -30 1 1669 226 338 0 70 chr6 142136974 142137060 -7379977 - RLTR22_Mur LTR ERVK 0 1322 1243 1 1669 3657 235 104 51 chr6 142137099 142138417 -7378620 - RLTR22_Mur LTR ERVK -177 1671 372 1 1669 3558 175 54 16 chr6 142139162 142139927 -7377110 - MMVL30-int LTR ERV1 -96 3602 2875 1 1669 707 287 27 21 chr6 142140230 142140565 -7376472 - MMVL30-int LTR ERV1 -3256 4522 4251 1 1669 2092 190 31 107 chr6 142140547 142141286 -7375751 - MMVL30-int LTR ERV1 -2409 2654 1779 1 1669 1115 79 6 17 chr6 142141287 142141467 -7375570 + (TTC)n Simple_repeat Simple_repeat 1 178 0 1 1669 471 202 0 98 chr6 142141484 142141616 -7375421 - MMVL30-int LTR ERV1 -2064 1634 1516 1 1669 423 0 0 0 chr6 142141797 142141844 -7375193 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1669 296 140 0 0 chr6 142141967 142142024 -7375013 - MMVL30-int LTR ERV1 -2187 1511 1455 1 1669 400 172 7 111 chr6 142142137 142142281 -7374756 - MMVL30-int LTR ERV1 -2222 1077 949 1 1669 792 178 21 112 chr6 142142383 142142624 -7374413 - MMVL30-int LTR ERV1 -2248 1450 1232 1 1669 655 160 104 31 chr6 142142638 142142831 -7374206 - MMVL30-int LTR ERV1 -2754 944 738 1 1669 595 97 9 28 chr6 142143189 142143295 -7373742 + (CAGA)n Simple_repeat Simple_repeat 4 107 0 1 1669 1066 231 65 81 chr6 142144004 142144376 -7372661 - RLTR22_Mur LTR ERVK -1468 380 15 1 1669 475 230 62 0 chr6 142144687 142144800 -7372237 - B3 SINE B2 0 216 97 1 1669 367 308 89 0 chr6 142146453 142146622 -7370415 - L1M3 LINE L1 -2557 3583 3400 1 1669 225 310 104 14 chr6 142146622 142146766 -7370271 - Kanga1d DNA Tc2 -212 397 241 1 1669 1348 218 26 55 chr6 142148136 142148520 -7368517 - ORR1D1 LTR MaLR 0 374 2 1 1669 336 357 7 52 chr6 142148595 142148731 -7368306 + B4A SINE B4 16 145 -147 1 1669 649 123 47 0 chr6 142148813 142148919 -7368118 + RMER6A LTR ERVK 1 111 -579 1 1669 541 196 0 130 chr6 142148903 142149026 -7368011 + MT2B LTR ERVL 181 287 -314 1 1669 2617 177 112 16 chr6 142149008 142149564 -7367473 + RMER6A LTR ERVK 135 743 -13 1 1669 656 256 22 39 chr6 142150078 142150257 -7366780 + B3A SINE B2 5 180 -18 1 1669 335 169 39 0 chr6 142151123 142151212 -7365825 + RLTR19 LTR ERVK 107 200 -296 1 1669 365 171 0 14 chr6 142151212 142151283 -7365754 + L1VL1 LINE L1 5 74 -6348 1 1669 31642 88 16 3 chr6 142151283 142156619 -7360418 + L1Md_F LINE L1 480 5883 0 1 1669 526 174 0 35 chr6 142156632 142156745 -7360292 - MYSERV6-int LTR ERVK -7025 1934 1826 1 1669 1300 202 11 22 chr6 142156731 142157009 -7360028 - MYSERV6-int LTR ERVK -7340 1619 1345 1 1669 4102 99 51 14 chr6 142157009 142157765 -7359272 - RLTR13C2 LTR ERVK 0 1033 3 1 1669 683 162 37 0 chr6 142157820 142157956 -7359081 - MYSERV6-int LTR ERVK -7701 1258 1118 1 1669 290 301 47 73 chr6 142157956 142158213 -7358824 - RLTR41 LTR ERV1 -33 474 191 1 1669 3263 132 60 8 chr6 142158537 142159138 -7357899 - MYSERV6-int LTR ERVK -7841 1118 487 1 1669 1992 154 14 52 chr6 142159153 142159515 -7357522 + ORR1B1 LTR MaLR 47 394 0 1 1669 3600 161 61 21 chr6 142159516 142160193 -7356844 + ORR1B1-int LTR MaLR 2 705 -1258 1 1669 1112 215 53 71 chr6 142160109 142160390 -7356647 + MT2B LTR ERVL 12 287 -314 1 1669 908 173 108 4 chr6 142160349 142160581 -7356456 + ORR1B1-int LTR MaLR 718 973 -990 1 1669 626 40 0 0 chr6 142160580 142160655 -7356382 + MTB_Mm LTR MaLR 333 407 0 1 1669 492 153 0 0 chr6 142160655 142160740 -7356297 - L1_Mur2 LINE L1 -1257 4620 4536 1 1669 291 114 0 0 chr6 142160779 142160823 -7356214 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1 1669 24468 95 17 9 chr6 142160823 142165677 -7351360 - Lx3A LINE L1 -7 6974 2080 1 1669 1495 130 23 11 chr6 142165671 142165936 -7351101 - L1_Mur2 LINE L1 -1400 4477 4210 1 1669 2069 180 14 2 chr6 142165935 142166363 -7350674 + L1_Mur2 LINE L1 3332 3764 -2113 1 1669 709 277 30 46 chr6 142166363 142166381 -7350656 - B3A SINE B2 -2 196 181 1 1669 396 0 0 0 chr6 142166381 142166425 -7350612 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1669 709 277 30 46 chr6 142166425 142166603 -7350434 - B3A SINE B2 -18 180 3 1 1669 303 250 130 13 chr6 142167124 142167201 -7349836 + 7SK RNA RNA 1 86 -245 1 1669 536 309 72 14 chr6 142167180 142167387 -7349650 - MTD LTR MaLR -200 219 1 1 1669 234 250 41 14 chr6 142167387 142167456 -7349581 + B1F SINE Alu 77 147 -2 1 1669 214 236 0 52 chr6 142167468 142167526 -7349511 + GA-rich Low_complexity Low_complexity 3 57 0 1 1669 219 277 31 0 chr6 142168593 142168658 -7348379 + ID4_ SINE ID 1 67 -16 1 1669 768 85 28 0 chr6 142168699 142168805 -7348232 + Lx LINE L1 6112 6220 -434 1 1669 300 238 80 26 chr6 142168826 142168977 -7348060 - Lx8 LINE L1 -3 7470 7312 1 1669 6833 60 19 11 chr6 142170584 142171536 -7345501 - L1_Mus2 LINE L1 -2 6564 5605 1 1669 462 167 0 0 chr6 142172690 142172774 -7344263 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 1 1669 2723 180 7 36 chr6 142173148 142173540 -7343497 + L1VL4 LINE L1 746 1125 -5532 1 1669 2911 78 0 10 chr6 142173540 142173940 -7343097 + MTA_Mm LTR MaLR 1 396 0 1 1669 13866 162 6 21 chr6 142173940 142176175 -7340862 + L1VL4 LINE L1 1126 3358 -2528 1 1669 1166 75 0 0 chr6 142176175 142176321 -7340716 + B1_Mus2 SINE Alu 2 147 0 1 1669 13866 161 6 21 chr6 142176321 142177023 -7340014 + L1VL4 LINE L1 3359 4015 -1871 1 1669 1945 82 0 0 chr6 142177021 142177301 -7339736 + L1_Mm LINE L1 2113 2392 -3491 1 1669 1093 66 20 7 chr6 142177484 142177636 -7339401 - B2_Mm2 SINE B2 -7 188 35 1 1669 1393 251 55 123 chr6 142177636 142178603 -7338434 - RMER1B Other Other -175 891 1 1 1669 528 276 136 12 chr6 142178669 142178911 -7338126 + RLTR10A LTR ERVK 140 411 0 1 1669 385 184 61 52 chr6 142178927 142179042 -7337995 + RLTR10-int LTR ERVK 318 433 -1554 1 1669 1667 282 60 48 chr6 142179523 142181975 -7335062 + RLTR45-int LTR ERVK 6529 7042 -202 1 1669 553 285 123 4 chr6 142182010 142182253 -7334784 + RLTR10A LTR ERVK 140 411 0 1 1669 883 236 98 103 chr6 142182309 142182677 -7334360 - ORR1D2 LTR MaLR 0 370 5 2 1669 423 289 20 40 chr6 142182795 142182943 -7334094 - RSINE1 SINE B4 -19 146 2 2 1669 487 345 71 12 chr6 142183625 142183877 -7333160 + MTEb LTR MaLR 13 279 -100 2 1669 295 49 24 0 chr6 142184900 142184941 -7332096 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1669 487 247 6 11 chr6 142184941 142185121 -7331916 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1669 1210 302 64 13 chr6 142185500 142185953 -7331084 + RMER5 LTR ERV1 59 534 0 2 1669 267 103 0 0 chr6 142186114 142186153 -7330884 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 1669 266 318 35 12 chr6 142186410 142186496 -7330541 + MTEb LTR MaLR 256 343 -36 2 1669 407 338 14 0 chr6 142186784 142186926 -7330111 + RSINE1 SINE B4 3 146 -19 2 1669 219 36 0 0 chr6 142186928 142186956 -7330081 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1669 600 333 49 5 chr6 142187121 142187344 -7329693 - 7SK RNA RNA -94 237 5 2 1669 307 333 108 7 chr6 142187552 142187691 -7329346 + HAL1-3A_ME LINE L1 2287 2439 -419 2 1669 192 77 0 0 chr6 142187691 142187717 -7329320 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 2 1669 206 358 0 9 chr6 142187722 142187832 -7329205 + GA-rich Low_complexity Low_complexity 5 113 0 2 1669 207 0 0 0 chr6 142188262 142188285 -7328752 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1669 5142 95 14 17 chr6 142188538 142189299 -7327738 + Lx3A LINE L1 6221 6979 -2 2 1669 23 0 0 0 chr6 142189306 142189329 -7327708 + AT_rich Low_complexity Low_complexity 1 23 0 2 1669 291 284 0 15 chr6 142189376 142189444 -7327593 + RSINE1 SINE B4 12 78 -87 2 1669 462 36 0 0 chr6 142189699 142189755 -7327282 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1669 3166 183 69 14 chr6 142189755 142190403 -7326634 + RMER6C LTR ERVK 7 690 0 2 1669 230 200 0 35 chr6 142190403 142190460 -7326577 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1669 198 0 0 0 chr6 142191091 142191113 -7325924 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1669 503 326 27 27 chr6 142191113 142191261 -7325776 - RSINE1 SINE B4 0 165 18 2 1669 308 64 0 21 chr6 142191669 142191717 -7325320 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2 1669 626 253 106 20 chr6 142191883 142192081 -7324956 - B3 SINE B2 0 216 2 2 1669 206 333 10 0 chr6 142192823 142192919 -7324118 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1669 876 191 52 6 chr6 142193080 142193254 -7323783 + RMER12 LTR ERVK 1 182 -1140 2 1669 1819 186 62 31 chr6 142193267 142193334 -7323703 + L1VL4 LINE L1 310 371 -5987 2 1669 1925 147 110 8 chr6 142193334 142193698 -7323339 - RLTR9D LTR ERVK -2 401 1 2 1669 1819 164 143 19 chr6 142193698 142194228 -7322809 + L1VL4 LINE L1 372 988 -5347 2 1669 1732 161 25 6 chr6 142194229 142194547 -7322490 + RMER12 LTR ERVK 163 486 -836 2 1669 5684 13 0 0 chr6 142194596 142195233 -7321804 - L1Md_A LINE L1 0 6582 5946 2 1669 3060 3 0 0 chr6 142195233 142195588 -7321449 + L1Md_A LINE L1 5593 5947 -635 2 1669 1210 212 126 114 chr6 142195592 142196096 -7320941 + RMER12 LTR ERVK 475 888 -434 2 1669 291 274 97 63 chr6 142196566 142196741 -7320296 + RMER12 LTR ERVK 1142 1322 0 2 1669 325 298 23 23 chr6 142196741 142196821 -7320216 - B4A SINE B4 -188 104 25 2 1669 597 265 0 4 chr6 142197808 142198039 -7318998 + GA-rich Low_complexity Low_complexity 1 230 0 2 1669 6039 58 10 0 chr6 142199847 142200642 -7316395 + L1Md_F2 LINE L1 5635 6437 -145 2 1669 197 158 15 123 chr6 142201108 142201173 -7315864 - L3 LINE CR1 -303 4186 4129 2 1669 226 325 0 13 chr6 142201116 142201194 -7315843 + L4 LINE RTE 1751 1827 -202 2 1669 265 312 13 0 chr6 142201914 142201991 -7315046 - ID_B1 SINE B4 -68 156 79 2 1669 633 314 18 28 chr6 142202185 142202393 -7314644 + B3A SINE B2 1 202 -14 2 1669 261 183 0 0 chr6 142202394 142202454 -7314583 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1669 22 56 0 0 chr6 142202490 142202526 -7314511 + AT_rich Low_complexity Low_complexity 1 36 0 2 1669 839 236 76 145 chr6 142203713 142204119 -7312918 + MTE2a LTR MaLR 2 379 0 2 1669 578 121 12 0 chr6 142204704 142204787 -7312250 + B2_Mm1t SINE B2 1 84 -109 2 1669 2222 119 136 19 chr6 142204787 142205119 -7311918 - RMER17A2 LTR ERVK 0 809 304 2 1669 1146 84 6 22 chr6 142205119 142205302 -7311735 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1669 2222 114 235 18 chr6 142205302 142205618 -7311419 - RMER17A2 LTR ERVK -488 418 2 2 1669 666 120 9 36 chr6 142205618 142205708 -7311329 + B2_Mm1t SINE B2 82 168 -25 2 1669 389 147 382 0 chr6 142205777 142205879 -7311158 + B2_Mm2 SINE B2 47 187 -8 2 1669 24 0 0 0 chr6 142205963 142205987 -7311050 + AT_rich Low_complexity Low_complexity 1 24 0 2 1669 32 86 0 0 chr6 142206129 142206210 -7310827 + AT_rich Low_complexity Low_complexity 1 81 0 2 1669 21 71 0 0 chr6 142206363 142206405 -7310632 + AT_rich Low_complexity Low_complexity 1 42 0 2 1669 309 264 167 28 chr6 142206930 142207074 -7309963 + RSINE1 SINE B4 2 165 0 2 1669 23 0 0 0 chr6 142207083 142207106 -7309931 + AT_rich Low_complexity Low_complexity 1 23 0 2 1669 399 286 188 0 chr6 142207829 142207983 -7309054 + MER63A DNA AcHobo 2 184 -26 2 1669 552 81 0 0 chr6 142208083 142208170 -7308867 + (TG)n Simple_repeat Simple_repeat 2 88 0 2 1669 432 285 43 31 chr6 142209132 142209295 -7307742 - B3 SINE B2 -13 203 39 2 1669 928 236 102 22 chr6 142209296 142209521 -7307516 + ORR1D2 LTR MaLR 1 243 -127 2 1669 962 122 18 6 chr6 142209552 142209717 -7307320 + URR1B DNA MER1_type 59 225 0 2 1669 420 219 74 68 chr6 142209559 142209735 -7307302 - CYRA11_Mm Unknown Y-chromosome -287 330 154 2 1669 260 315 11 0 chr6 142209718 142209807 -7307230 + ORR1D2 LTR MaLR 281 370 0 2 1669 538 275 53 118 chr6 142209894 142210227 -7306810 + ORR1E LTR MaLR 41 380 -4 2 1669 1264 281 68 15 chr6 142210480 142210878 -7306159 + MTD LTR MaLR 1 419 0 2 1669 499 307 32 26 chr6 142211407 142211561 -7305476 + RSINE1 SINE B4 11 165 0 2 1669 566 28 14 0 chr6 142211591 142211663 -7305374 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 2 1669 594 285 57 0 chr6 142211688 142211846 -7305191 + ID_B1 SINE B4 46 212 -12 2 1669 21 36 0 0 chr6 142211871 142211899 -7305138 + AT_rich Low_complexity Low_complexity 1 28 0 2 1669 258 136 0 0 chr6 142212075 142212119 -7304918 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 208 818 218 62 57 chr6 142213007 142213216 -7303821 + ID_B1 SINE B4 6 215 -9 2 1670 361 273 35 26 chr6 142213241 142213354 -7303683 + RSINE1 SINE B4 12 125 -40 2 1670 246 116 0 0 chr6 142213363 142213406 -7303631 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1670 429 95 0 0 chr6 142213746 142213809 -7303228 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1670 321 267 50 25 chr6 142215548 142215667 -7301370 + B1F1 SINE Alu 1 122 -27 2 1670 2384 105 49 6 chr6 142215845 142216210 -7300827 - Lx2 LINE L1 -7 6990 6610 2 1670 305 356 109 38 chr6 142217268 142217507 -7299530 + MER70B LTR ERVL 1 256 -322 2 1670 209 205 0 0 chr6 142218052 142218091 -7298946 + T-rich Low_complexity Low_complexity 2 40 0 2 1670 200 184 0 0 chr6 142218090 142218128 -7298909 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1670 1001 351 11 0 chr6 142218139 142218418 -7298619 - B4 SINE B4 -2 290 9 2 1670 13911 60 0 0 chr6 142218447 142220294 -7296743 + L1Md_F2 LINE L1 3740 5586 -297 2 1670 8058 50 0 1 chr6 142220294 142221279 -7295758 + L1Md_F2 LINE L1 5587 6570 -12 2 1670 468 0 0 0 chr6 142221477 142221529 -7295508 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1670 1541 177 77 63 chr6 142221890 142222252 -7294785 + ORR1B2 LTR MaLR 1 367 0 2 1670 1019 252 28 5 chr6 142222378 142222589 -7294448 + B3 SINE B2 1 216 0 2 1670 195 42 0 0 chr6 142222721 142222745 -7294292 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1670 196 316 95 40 chr6 142222831 142222968 -7294069 - MIR SINE MIR -62 214 65 2 1670 1010 147 121 10 chr6 142223579 142223778 -7293259 - URR1B DNA MER1_type 0 225 5 2 1670 289 185 7 4 chr6 142224219 142224277 -7292760 - MTD LTR MaLR 0 419 374 2 1670 233 271 29 0 chr6 142225389 142225459 -7291578 - L2a LINE L2 -11 3415 3344 2 1670 273 281 0 0 chr6 142225544 142225640 -7291397 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 1670 737 22 11 0 chr6 142225657 142225748 -7291289 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 2 1670 756 22 0 0 chr6 142227831 142227921 -7289116 + (GA)n Simple_repeat Simple_repeat 1 90 0 2 1670 281 343 56 51 chr6 142228466 142228644 -7288393 - LTR33A LTR ERVL -328 192 14 2 1670 234 401 43 0 chr6 142229293 142229455 -7287582 - MIR SINE MIR -37 225 57 2 1670 271 252 75 42 chr6 142229664 142229784 -7287253 + B3A SINE B2 25 148 -50 2 1670 479 17 17 0 chr6 142229786 142229846 -7287191 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1670 268 303 47 47 chr6 142229898 142229948 -7287089 + ID_B1 SINE B4 97 144 -80 2 1670 510 167 0 10 chr6 142229948 142229963 -7287074 - L1_Mus3 LINE L1 -1 6637 6623 2 1670 228 67 0 0 chr6 142229963 142229993 -7287044 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2 1670 510 167 0 10 chr6 142229993 142230080 -7286957 - L1_Mus3 LINE L1 -16 6622 6536 2 1670 268 303 47 47 chr6 142230080 142230157 -7286880 + ID_B1 SINE B4 145 223 -1 2 1670 4249 183 73 8 chr6 142230786 142231696 -7285341 + Lx3C LINE L1 6024 6998 -2 2 1670 945 53 0 0 chr6 142232256 142232370 -7284667 + L1Md_F2 LINE L1 5472 5585 -298 2 1670 8444 48 6 6 chr6 142232371 142233366 -7283671 + L1Md_F2 LINE L1 5587 6581 -1 2 1670 511 360 0 53 chr6 142233694 142233864 -7283173 - RSINE1 SINE B4 0 165 5 2 1670 219 247 0 0 chr6 142235027 142235100 -7281937 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1670 655 179 26 0 chr6 142235769 142235886 -7281151 - B3A SINE B2 -78 120 1 2 1670 312 102 0 0 chr6 142236572 142236621 -7280416 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1670 655 221 145 6 chr6 142236835 142236994 -7280043 + B3A SINE B2 2 182 -16 2 1670 309 311 87 10 chr6 142237147 142237342 -7279695 - L1MC4 LINE L1 -624 7418 7209 2 1670 1001 226 62 25 chr6 142237499 142237740 -7279297 - MTEa LTR MaLR -8 371 122 2 1670 450 36 0 0 chr6 142237790 142237846 -7279191 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1670 381 325 149 16 chr6 142237853 142238103 -7278934 - B4A SINE B4 -8 284 2 3 1670 355 261 213 15 chr6 142238331 142238467 -7278570 - MTEb LTR MaLR -141 238 76 3 1670 21539 73 3 5 chr6 142238987 142242504 -7274533 - L1Md_F2 LINE L1 -1 6581 3072 3 1670 286 308 13 13 chr6 142242946 142243025 -7274012 + 7SK RNA RNA 1 79 -252 3 1670 429 312 65 81 chr6 142243035 142243220 -7273817 - MTD LTR MaLR -232 187 6 3 1670 1092 119 0 0 chr6 142243293 142243461 -7273576 + (GGGAGA)n Simple_repeat Simple_repeat 3 170 0 3 1670 1214 95 0 6 chr6 142243479 142243659 -7273378 + (GGGAA)n Simple_repeat Simple_repeat 2 180 0 3 1670 231 277 31 0 chr6 142244696 142244761 -7272276 + ID4_ SINE ID 1 67 -16 3 1670 419 254 118 8 chr6 142245094 142245221 -7271816 + ID_B1 SINE B4 79 219 -5 3 1670 511 309 115 19 chr6 142245337 142245598 -7271439 + B4 SINE B4 1 286 -6 3 1670 909 85 65 0 chr6 142245598 142245751 -7271286 + Lx3_Mus LINE L1 6839 7001 -8 3 1670 240 278 0 14 chr6 142245968 142246041 -7270996 - Lx8 LINE L1 -12 7461 7390 3 1670 2298 93 0 7 chr6 142246185 142246489 -7270548 - Lx3_Mus LINE L1 -8 7001 6700 3 1670 513 47 0 0 chr6 142249404 142249468 -7267569 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 3 1670 240 277 133 38 chr6 142249655 142249760 -7267277 + PB1D9 SINE Alu 5 119 -1 3 1670 275 325 98 88 chr6 142250238 142250535 -7266502 + ORR1E LTR MaLR 18 317 -42 3 1670 222 333 63 27 chr6 142250658 142250769 -7266268 + B1_Mur4 SINE Alu 3 117 -33 3 1670 324 289 70 9 chr6 142250672 142250787 -7266250 + ID_B1 SINE B4 94 215 -9 3 1670 334 274 52 13 chr6 142251119 142251257 -7265780 - L1MB1 LINE L1 -4 6185 6045 3 1670 25 51 0 0 chr6 142252454 142252493 -7264544 + AT_rich Low_complexity Low_complexity 1 39 0 3 1670 2959 38 0 39 chr6 142252514 142252875 -7264162 - L1Md_F3 LINE L1 -14 6570 6224 3 1670 2554 40 0 0 chr6 142252877 142253175 -7263862 + L1Md_T LINE L1 5927 6224 -358 3 1670 441 0 0 0 chr6 142253219 142253268 -7263769 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1670 346 193 53 3 chr6 142253566 142253657 -7263380 - B1_Mus1 SINE Alu -7 142 34 3 1670 240 250 15 30 chr6 142253600 142253666 -7263371 - RLTR25A LTR ERVK -539 564 500 3 1670 307 132 57 0 chr6 142253735 142253788 -7263249 + B3A SINE B2 4 59 -139 3 1670 27 29 0 0 chr6 142253863 142253897 -7263140 + AT_rich Low_complexity Low_complexity 1 34 0 3 1670 279 0 0 0 chr6 142254259 142254290 -7262747 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1670 349 327 96 18 chr6 142254516 142254793 -7262244 - B4A SINE B4 -18 274 10 3 1670 1250 247 86 31 chr6 142256069 142256296 -7260741 - MTE2a LTR MaLR 0 379 149 3 1670 2240 155 98 13 chr6 142256296 142256682 -7260355 - MTC LTR MaLR -2 419 1 3 1670 1250 247 86 31 chr6 142256682 142256805 -7260232 - MTE2a LTR MaLR -231 148 10 3 1670 1333 14 7 0 chr6 142256812 142256958 -7260079 + B1_Mm SINE Alu 1 147 0 3 1670 184 30 61 0 chr6 142256960 142256993 -7260044 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1670 816 107 0 0 chr6 142257133 142257254 -7259783 + (TAGA)n Simple_repeat Simple_repeat 1 121 0 3 1670 433 243 71 18 chr6 142257318 142257431 -7259606 + PB1D7 SINE Alu 2 120 0 3 1670 16626 154 20 12 chr6 142258263 142261722 -7255315 + L1VL2 LINE L1 743 4235 -1651 3 1670 290 87 0 21 chr6 142263200 142263247 -7253790 + (AGGGGG)n Simple_repeat Simple_repeat 2 47 0 3 1670 5245 51 2 0 chr6 142263352 142263981 -7253056 - L1Md_F2 LINE L1 -75 5808 5179 3 1670 6706 38 3 5 chr6 142263981 142264745 -7252292 + L1Md_F2 LINE L1 5820 6581 -1 3 1670 444 303 18 9 chr6 142264780 142264890 -7252147 - PB1D7 SINE Alu -6 114 4 3 1670 591 270 101 56 chr6 142265383 142265658 -7251379 + RMER20B LTR ERVK 86 369 -147 3 1670 885 209 75 20 chr6 142265777 142265977 -7251060 + B3 SINE B2 6 216 0 3 1670 726 253 30 6 chr6 142266098 142266265 -7250772 - B3 SINE B2 -5 211 41 3 1670 329 0 24 0 chr6 142266414 142266455 -7250582 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 3 1670 660 242 8 8 chr6 142266470 142266595 -7250442 - RSINE1 SINE B4 -37 128 4 3 1670 3025 30 3 0 chr6 142266654 142266985 -7250052 - IAPEY3_LTR LTR ERVK 0 332 1 3 1670 297 186 43 0 chr6 142267131 142267201 -7249836 + Charlie2b DNA MER1_type 164 236 -2546 3 1670 382 307 68 29 chr6 142267284 142267489 -7249548 + Charlie2b DNA MER1_type 1201 1413 -1369 3 1670 3419 119 58 34 chr6 142267540 142268072 -7248965 + Lx4A LINE L1 6514 7058 0 3 1670 679 22 22 0 chr6 142268082 142268171 -7248866 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 3 1670 397 253 16 22 chr6 142268242 142268346 -7248691 + B1F2 SINE Alu 27 134 -16 3 1670 282 304 116 7 chr6 142268461 142268607 -7248430 + RMER5 LTR ERV1 23 184 -350 3 1670 1260 106 0 0 chr6 142268821 142269264 -7247773 + (TG)n Simple_repeat Simple_repeat 1 443 0 3 1670 351 44 0 0 chr6 142269264 142269309 -7247728 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1670 498 134 0 0 chr6 142269309 142269329 -7247708 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1670 351 277 143 41 chr6 142269370 142269517 -7247520 + RSINE1 SINE B4 3 164 -1 3 1670 25 51 0 0 chr6 142269525 142269564 -7247473 + AT_rich Low_complexity Low_complexity 1 39 0 3 1670 28 0 0 0 chr6 142269619 142269647 -7247390 + AT_rich Low_complexity Low_complexity 1 28 0 3 1670 816 95 313 20 chr6 142270842 142270992 -7246045 + B2_Mm2 SINE B2 2 195 0 3 1670 327 113 0 0 chr6 142272331 142272384 -7244653 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1670 220 146 18 35 chr6 142272393 142272450 -7244587 + GA-rich Low_complexity Low_complexity 4 59 0 3 1670 186 43 0 0 chr6 142272447 142272470 -7244567 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 3 1670 719 294 146 5 chr6 142272537 142272749 -7244288 + B4 SINE B4 44 285 -7 3 1670 4142 133 18 5 chr6 142272772 142273401 -7243636 - RLTR17 LTR ERVK -55 637 1 3 1670 748 291 28 74 chr6 142273561 142273884 -7243153 + RMER10A LTR ERVL 121 428 -14 3 1670 614 276 67 6 chr6 142273881 142274045 -7242992 + B3A SINE B2 17 190 -8 3 1670 393 102 0 0 chr6 142275174 142275233 -7241804 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1670 650 276 69 39 chr6 142275307 142275567 -7241470 - B4A SINE B4 -24 268 1 3 1670 285 259 0 124 chr6 142275582 142275679 -7241358 - PB1D10 SINE Alu 0 117 33 3 1670 241 273 82 31 chr6 142275679 142275837 -7241200 + MIR SINE MIR 75 247 -21 3 1670 464 260 0 26 chr6 142276267 142276391 -7240646 + B1_Mur4 SINE Alu 2 118 -2 3 1670 385 239 60 0 chr6 142276648 142276765 -7240272 - L1_Mur3 LINE L1 -1637 4243 4120 3 1670 1006 285 59 21 chr6 142276735 142277022 -7240015 + Lx8 LINE L1 6459 6756 -717 3 1670 1417 247 113 9 chr6 142277251 142277704 -7239333 - Lx8 LINE L1 -2 7471 6972 3 1670 339 235 64 55 chr6 142278286 142278426 -7238611 + B1F2 SINE Alu 23 140 -9 3 1670 20753 174 24 33 chr6 142279175 142280352 -7236685 + Lx4B LINE L1 879 2060 -3817 3 1670 630 0 0 0 chr6 142280352 142280422 -7236615 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1670 324 0 0 0 chr6 142280422 142280457 -7236580 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1670 20753 159 29 37 chr6 142280457 142281899 -7235138 + Lx4B LINE L1 2061 3486 -2391 3 1670 315 49 0 0 chr6 142281899 142281940 -7235097 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 1670 20753 159 29 37 chr6 142281940 142282472 -7234565 + Lx4B LINE L1 3487 3997 -1880 3 1670 4861 132 25 17 chr6 142282472 142283248 -7233789 - Lx4A LINE L1 0 7058 6277 3 1670 20753 166 27 43 chr6 142283248 142284554 -7232483 + Lx4B LINE L1 3998 5259 -1799 3 1670 1046 134 12 0 chr6 142284554 142284725 -7232312 + B2_Mm1t SINE B2 7 179 -14 3 1670 20753 166 27 43 chr6 142284725 142284772 -7232265 + Lx4B LINE L1 5260 5304 -1754 3 1670 369 120 0 2 chr6 142284772 142284835 -7232202 + B2_Mm2 SINE B2 47 108 -108 3 1670 20753 166 27 43 chr6 142284835 142286156 -7230881 + Lx4B LINE L1 5305 6584 -474 3 1670 1938 160 6 12 chr6 142286139 142286462 -7230575 - Lx4B LINE L1 -168 6890 6570 3 1670 768 232 42 10 chr6 142286553 142286745 -7230292 + B3A SINE B2 1 198 0 3 1670 575 247 6 70 chr6 142287467 142287624 -7229413 - RLTR33 LTR ERVK -85 593 447 3 1670 240 259 0 0 chr6 142287789 142287847 -7229190 - RLTR19C LTR ERVK -416 90 33 3 1670 304 336 131 14 chr6 142288805 142288938 -7228099 + L1MD1 LINE L1 5855 6013 -229 3 1670 540 0 0 0 chr6 142288938 142288998 -7228039 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1670 304 336 131 14 chr6 142288998 142289139 -7227898 + L1MD1 LINE L1 6014 6160 -82 3 1670 345 256 155 48 chr6 142289174 142289342 -7227695 + ID_B1 SINE B4 7 192 -32 3 1670 270 0 0 0 chr6 142289353 142289383 -7227654 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 3 1670 296 102 0 20 chr6 142289386 142289436 -7227601 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1670 264 239 0 0 chr6 142289450 142289471 -7227566 + A-rich Low_complexity Low_complexity 1 21 0 3 1670 1098 77 28 0 chr6 142289471 142289614 -7227423 + B1_Mus1 SINE Alu 1 147 -1 3 1670 264 239 0 0 chr6 142289614 142289684 -7227353 + A-rich Low_complexity Low_complexity 22 91 0 3 1670 245 359 22 0 chr6 142289809 142289901 -7227136 + MER58B DNA MER1_type 148 241 -100 3 1670 470 224 93 36 chr6 142290242 142290381 -7226656 + B3A SINE B2 49 195 -3 3 1670 234 222 0 0 chr6 142290413 142290458 -7226579 + ID_B1 SINE B4 100 144 -80 3 1670 4265 153 72 20 chr6 142290511 142291363 -7225674 + RLTR25A LTR ERVK 1 896 -207 3 1670 1373 163 31 19 chr6 142291355 142291611 -7225426 - MTC LTR MaLR -96 325 67 3 1670 930 210 146 9 chr6 142291630 142291856 -7225181 - Lx5 LINE L1 0 7050 6794 3 1670 23 54 0 0 chr6 142292076 142292113 -7224924 + AT_rich Low_complexity Low_complexity 1 37 0 3 1670 749 228 112 16 chr6 142292168 142292355 -7224682 + B3 SINE B2 5 209 -7 4 1670 987 109 14 7 chr6 142292401 142292548 -7224489 - B1_Mus1 SINE Alu 0 148 1 4 1670 326 244 26 0 chr6 142292576 142292654 -7224383 - B3 SINE B2 -2 214 135 4 1670 399 21 0 0 chr6 142292654 142292702 -7224335 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1670 1267 14 0 7 chr6 142293737 142293884 -7223153 + B1_Mm SINE Alu 2 147 0 4 1670 284 261 21 42 chr6 142298341 142298437 -7218600 - PB1D10 SINE Alu -18 99 6 4 1670 276 295 60 8 chr6 142298935 142299068 -7217969 + ID_B1 SINE B4 69 208 -16 4 1670 2855 49 6 0 chr6 142300469 142300813 -7216224 - ORR1A1 LTR MaLR 0 346 1 4 1670 383 184 536 0 chr6 142300997 142301135 -7215902 - URR1B DNA MER1_type 0 225 14 4 1670 1211 68 0 0 chr6 142302507 142302654 -7214383 + B1_Mm SINE Alu 1 147 0 4 1670 3035 57 88 14 chr6 142303460 142303869 -7213168 + Lx3_Mus LINE L1 6547 6989 -20 4 1670 342 0 0 0 chr6 142303869 142303907 -7213130 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 4 1670 3035 57 88 14 chr6 142303907 142303928 -7213109 + Lx3_Mus LINE L1 6990 7009 0 4 1670 675 253 63 0 chr6 142303934 142304124 -7212913 + B3 SINE B2 1 202 -14 4 1670 425 200 102 28 chr6 142304149 142304257 -7212780 + PB1D9 SINE Alu 5 120 0 4 1670 1026 52 0 0 chr6 142304301 142304436 -7212601 + B1_Mm SINE Alu 13 147 0 4 1670 468 0 0 0 chr6 142304446 142304498 -7212539 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1670 797 112 276 0 chr6 142306479 142306631 -7210406 + B2_Mm2 SINE B2 2 195 0 4 1670 422 324 70 6 chr6 142308063 142308234 -7208803 - RMER30 DNA MER1_type -1 201 20 4 1670 195 292 97 0 chr6 142308456 142308528 -7208509 - MIRb SINE MIR -81 187 109 4 1670 210 278 75 32 chr6 142309038 142309131 -7207906 + B4A SINE B4 27 123 -169 4 1670 554 232 96 73 chr6 142309620 142309797 -7207240 + B3A SINE B2 2 182 -16 4 1670 3901 79 27 2 chr6 142312223 142312744 -7204293 + L1Md_F2 LINE L1 6029 6562 -20 4 1670 378 290 184 9 chr6 142314205 142314417 -7202620 - MLT1D LTR MaLR -7 498 250 4 1670 246 290 128 8 chr6 142318370 142318495 -7198542 + RMER15 LTR ERVL 422 561 -14 4 1670 252 259 111 0 chr6 142319295 142319376 -7197661 + LTR33C LTR ERVL 495 584 -45 4 1670 446 230 217 0 chr6 142319692 142319844 -7197193 + B3 SINE B2 26 210 -6 4 1670 393 163 11 21 chr6 142319898 142319992 -7197045 + (TA)n Simple_repeat Simple_repeat 2 94 0 4 1670 760 162 79 22 chr6 142320522 142320661 -7196376 + B1_Mur1 SINE Alu 1 147 -2 4 1670 591 207 20 73 chr6 142322097 142322248 -7194789 + RSINE1 SINE B4 3 145 -20 4 1670 378 230 332 101 chr6 142322662 142322892 -7194145 - B4 SINE B4 0 292 10 4 1670 237 304 118 34 chr6 142323032 142323236 -7193801 - MER58B DNA MER1_type -120 221 1 4 1670 466 244 74 116 chr6 142323661 142323851 -7193186 + B3A SINE B2 9 190 -5 4 1670 358 290 190 18 chr6 142324355 142324629 -7192408 + MLT1A0 LTR MaLR 40 360 -5 4 1670 338 279 201 39 chr6 142325952 142326131 -7190906 - B3 SINE B2 -7 209 2 4 1670 599 177 114 8 chr6 142326172 142326303 -7190734 + B1_Mur2 SINE Alu 5 149 0 4 1670 504 48 0 0 chr6 142326408 142326471 -7190566 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 4 1670 334 330 83 78 chr6 142327574 142327958 -7189079 + MLT2F LTR ERVL 110 495 -168 4 1670 379 274 28 9 chr6 142328118 142328225 -7188812 - PB1D10 SINE Alu -8 109 1 4 1670 261 305 50 31 chr6 142328702 142328861 -7188176 + ERVL-E-int LTR ERVL 4107 4268 -1399 4 1670 1180 57 0 34 chr6 142329101 142329573 -7187464 + (CA)n Simple_repeat Simple_repeat 1 455 0 4 1670 512 265 145 24 chr6 142329706 142329961 -7187076 + ERVL-E-int LTR ERVL 4777 5062 -605 4 1670 318 340 96 23 chr6 142330688 142330908 -7186129 + MLT2F LTR ERVL 428 663 0 4 1670 438 289 30 0 chr6 142332330 142332465 -7184572 + L1M4 LINE L1 5522 5660 -514 4 1670 198 143 0 0 chr6 142332552 142332587 -7184450 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1670 210 139 0 0 chr6 142333435 142333471 -7183566 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 4 1670 182 62 0 30 chr6 142333488 142333521 -7183516 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 4 1670 1007 47 47 0 chr6 142333521 142333649 -7183388 - B1_Mus2 SINE Alu -13 134 1 4 1670 219 234 21 0 chr6 142334027 142334074 -7182963 - B1_Mus1 SINE Alu -99 49 2 4 1670 210 143 0 0 chr6 142334111 142334146 -7182891 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 1670 296 283 76 30 chr6 142336335 142336466 -7180571 - B1F SINE Alu -12 137 1 4 1670 442 198 75 9 chr6 142337209 142337316 -7179721 - B3A SINE B2 -48 150 37 4 1670 1188 67 6 0 chr6 142338738 142338902 -7178135 - B2_Mm1t SINE B2 -27 166 2 4 1670 977 242 50 46 chr6 142339284 142339352 -7177685 - B4A SINE B4 -1 291 218 4 1670 351 65 0 0 chr6 142339352 142339398 -7177639 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1670 977 242 50 46 chr6 142339398 142339611 -7177426 - B4A SINE B4 -75 217 10 4 1670 1037 83 0 0 chr6 142339934 142340066 -7176971 + B1_Mus2 SINE Alu 1 132 -15 4 1670 278 373 27 0 chr6 142341176 142341286 -7175751 + PB1D7 SINE Alu 1 113 -7 4 1670 431 274 0 26 chr6 142343608 142343724 -7173313 + RSINE1 SINE B4 53 165 0 4 1671 200 205 0 0 chr6 142350236 142350275 -7166762 + (CAG)n Simple_repeat Simple_repeat 1 39 0 4 1671 225 0 0 0 chr6 142350585 142350610 -7166427 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1671 542 287 94 0 chr6 142352604 142352785 -7164252 + B3 SINE B2 8 205 -11 4 1671 309 318 74 11 chr6 142353203 142353378 -7163659 - MT2A LTR ERVL -76 457 272 4 1671 201 74 0 0 chr6 142353500 142353527 -7163510 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 4 1671 315 71 0 0 chr6 142353556 142353598 -7163439 + (T)n Simple_repeat Simple_repeat 1 42 0 4 1671 245 237 0 48 chr6 142354029 142354091 -7162946 + PB1D10 SINE Alu 28 86 -31 4 1671 25 31 0 0 chr6 142355950 142355982 -7161055 + AT_rich Low_complexity Low_complexity 1 32 0 4 1671 198 0 0 0 chr6 142355988 142356010 -7161027 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1671 495 0 0 0 chr6 142356010 142356064 -7160973 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 1671 226 239 15 0 chr6 142356088 142356155 -7160882 - B4 SINE B4 -223 69 2 4 1671 333 0 0 0 chr6 142356390 142356427 -7160610 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1671 535 303 90 13 chr6 142356555 142356789 -7160248 - Lx9 LINE L1 -147 7497 7246 4 1671 364 261 18 18 chr6 142356806 142356919 -7160118 - Lx9 LINE L1 -451 7193 7081 4 1671 742 236 39 158 chr6 142356919 142357280 -7159757 + MTEa LTR MaLR 84 374 -5 4 1671 794 126 18 6 chr6 142357410 142357578 -7159459 + (CATA)n Simple_repeat Simple_repeat 1 170 0 4 1671 243 288 25 12 chr6 142357585 142357666 -7159371 + MLT1A0 LTR MaLR 121 202 -163 4 1671 857 230 24 10 chr6 142358296 142358502 -7158535 - B3 SINE B2 -1 215 7 4 1671 5377 173 29 52 chr6 142358605 142359848 -7157189 + RMER12 LTR ERVK 5 1219 -103 4 1671 270 0 0 0 chr6 142360380 142360410 -7156627 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1671 555 281 8 30 chr6 142360419 142360551 -7156486 - RSINE1 SINE B4 -35 130 2 4 1671 180 0 0 0 chr6 142361227 142361247 -7155790 + (TC)n Simple_repeat Simple_repeat 2 21 0 4 1671 272 48 24 0 chr6 142361247 142361288 -7155749 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1671 233 29 29 0 chr6 142362267 142362301 -7154736 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1671 271 231 192 0 chr6 142362793 142362871 -7154166 + B1F SINE Alu 23 115 -34 4 1671 325 316 7 41 chr6 142362879 142363024 -7154013 + GA-rich Low_complexity Low_complexity 3 142 0 4 1671 224 209 0 23 chr6 142363103 142363147 -7153890 + polypurine Low_complexity Low_complexity 4 46 0 4 1671 364 261 11 0 chr6 142364540 142364632 -7152405 + RSINE1 SINE B4 2 94 -71 4 1671 255 61 0 0 chr6 142364633 142364666 -7152371 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1671 23 54 0 0 chr6 142364686 142364723 -7152314 + AT_rich Low_complexity Low_complexity 1 37 0 4 1671 189 0 0 0 chr6 142365173 142365194 -7151843 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1671 355 244 0 0 chr6 142365205 142365283 -7151754 - ID_B1 SINE B4 -22 202 125 4 1671 425 309 29 0 chr6 142365655 142365794 -7151243 - RSINE1 SINE B4 -20 145 3 4 1671 246 148 48 24 chr6 142365849 142365932 -7151105 + (TTA)n Simple_repeat Simple_repeat 3 87 0 4 1671 765 226 42 6 chr6 142366698 142366863 -7150174 + ID_B1 SINE B4 1 171 -53 4 1671 357 24 0 0 chr6 142367987 142368029 -7149008 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1671 273 319 14 56 chr6 142368677 142368820 -7148217 - MLT1A1 LTR MaLR -19 389 253 4 1671 290 337 113 38 chr6 142369884 142370069 -7146968 - MLT1A0 LTR MaLR -11 354 156 4 1671 312 158 0 0 chr6 142370069 142370126 -7146911 + CT-rich Low_complexity Low_complexity 2 58 0 4 1671 264 307 0 13 chr6 142370138 142370214 -7146823 + CT-rich Low_complexity Low_complexity 3 77 0 4 1671 849 110 0 0 chr6 142370214 142370341 -7146696 + (TTTC)n Simple_repeat Simple_repeat 3 129 0 4 1671 288 270 40 0 chr6 142370356 142370430 -7146607 - ID4_ SINE ID -3 80 4 4 1671 375 284 10 0 chr6 142370433 142370535 -7146502 - MLT1A0 LTR MaLR -210 155 53 4 1671 453 284 8 8 chr6 142371572 142371689 -7145348 - PB1D7 SINE Alu -3 117 1 4 1671 225 154 0 0 chr6 142372217 142372256 -7144781 + (TTG)n Simple_repeat Simple_repeat 3 41 0 4 1671 251 183 282 0 chr6 142372258 142372329 -7144708 - B1_Mur2 SINE Alu -16 133 43 4 1671 420 71 0 0 chr6 142372350 142372406 -7144631 + (T)n Simple_repeat Simple_repeat 1 56 0 4 1671 1224 48 0 0 chr6 142372406 142372553 -7144484 - B1_Mm SINE Alu 0 147 1 5 1671 180 0 0 0 chr6 142372608 142372628 -7144409 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1671 801 54 0 0 chr6 142372629 142372740 -7144297 + (GA)n Simple_repeat Simple_repeat 1 111 0 5 1671 441 226 65 9 chr6 142372758 142372865 -7144172 - B3A SINE B2 -77 121 9 5 1671 200 176 0 0 chr6 142373104 142373138 -7143899 + GA-rich Low_complexity Low_complexity 1 34 0 5 1671 200 267 81 65 chr6 142373142 142373266 -7143771 - MIRm SINE MIR -133 143 18 5 1671 216 0 0 0 chr6 142373612 142373636 -7143401 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1671 261 0 0 0 chr6 142373893 142373922 -7143115 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1671 303 349 18 0 chr6 142374494 142374603 -7142434 - PB1 SINE Alu -3 124 14 5 1671 573 215 66 106 chr6 142374636 142374834 -7142203 - RMER30 DNA MER1_type -6 196 7 5 1671 238 300 108 42 chr6 142374902 142375069 -7141968 - LTR87 LTR ERVL? -440 184 7 5 1671 3195 56 13 2 chr6 142375102 142375498 -7141539 + MTB LTR MaLR 1 400 0 5 1671 867 189 191 16 chr6 142377392 142377575 -7139462 - B3 SINE B2 0 216 2 5 1671 740 114 0 0 chr6 142377959 142378073 -7138964 - URR1B DNA MER1_type 0 225 112 5 1671 1267 101 39 17 chr6 142378073 142378254 -7138783 - B2_Mm2 SINE B2 -9 186 2 5 1671 981 66 22 0 chr6 142378288 142378425 -7138612 - B2_Mm2 SINE B2 -54 141 2 5 1671 256 111 0 0 chr6 142378425 142378470 -7138567 - URR1B DNA MER1_type -103 122 78 5 1671 283 315 50 73 chr6 142379002 142379221 -7137816 - MIR SINE MIR -26 236 23 5 1671 566 288 42 33 chr6 142379577 142379818 -7137219 - B4A SINE B4 -48 244 2 5 1671 22 80 0 0 chr6 142380139 142380189 -7136848 + AT_rich Low_complexity Low_complexity 1 50 0 5 1671 1804 182 54 18 chr6 142380273 142380664 -7136373 - MTD LTR MaLR -18 401 10 5 1671 23 0 0 0 chr6 142380664 142380687 -7136350 + AT_rich Low_complexity Low_complexity 1 23 0 5 1671 25 0 0 0 chr6 142380737 142380762 -7136275 + AT_rich Low_complexity Low_complexity 1 25 0 5 1671 1113 216 45 76 chr6 142381182 142381787 -7135250 + Lx4A LINE L1 863 1439 -4438 5 1671 36169 45 3 8 chr6 142381787 142386994 -7130043 + L1Md_F2 LINE L1 412 5586 -297 5 1671 8282 44 2 1 chr6 142386994 142387989 -7129048 + L1Md_F2 LINE L1 5587 6582 0 5 1671 20809 170 37 19 chr6 142387999 142391121 -7125916 + Lx4A LINE L1 1471 4639 -1241 5 1671 1259 83 72 6 chr6 142391121 142391302 -7125735 + B2_Mm2 SINE B2 3 195 0 5 1671 20809 171 39 19 chr6 142391302 142392459 -7124578 + Lx4A LINE L1 4640 5834 -1224 5 1671 598 196 0 0 chr6 142392428 142392530 -7124507 + L1_Mur3 LINE L1 5671 5772 -108 5 1671 1028 262 11 49 chr6 142392534 142392874 -7124163 + Lx4A LINE L1 6456 6901 -559 5 1671 3949 50 1 0 chr6 142392873 142393484 -7123553 + L1_Mus1 LINE L1 5438 6049 -518 5 1671 239 283 0 0 chr6 142393707 142393767 -7123270 - tRNA-Ala-GCY_ tRNA tRNA -7 68 9 5 1671 325 263 40 48 chr6 142394877 142395001 -7122036 + LTR79 LTR ERVL 373 495 -32 5 1671 1040 197 39 0 chr6 142395755 142395958 -7121079 + B3 SINE B2 6 216 0 5 1671 643 280 7 0 chr6 142396000 142396143 -7120894 + RSINE1 SINE B4 1 144 -21 5 1671 47 92 0 0 chr6 142396181 142396312 -7120725 + AT_rich Low_complexity Low_complexity 1 131 0 5 1671 733 297 70 12 chr6 142396601 142396860 -7120177 - B4 SINE B4 -4 288 15 5 1671 448 262 41 8 chr6 142397663 142397786 -7119251 + RSINE1 SINE B4 13 139 -26 5 1671 1080 144 51 0 chr6 142398470 142398665 -7118372 - URR1A DNA MER1_type 0 226 22 5 1671 1753 116 94 0 chr6 142398668 142398945 -7118092 + ORR1A2 LTR MaLR 25 327 0 5 1671 1920 163 53 6 chr6 142399099 142399456 -7117581 + ORR1D1 LTR MaLR 1 374 0 5 1671 215 371 10 10 chr6 142400681 142400779 -7116258 - MIRb SINE MIR -34 234 137 5 1671 515 247 88 44 chr6 142401587 142401769 -7115268 - B3 SINE B2 -25 191 2 5 1671 676 107 9 9 chr6 142402202 142402315 -7114722 + (TCCC)n Simple_repeat Simple_repeat 3 115 0 5 1671 648 204 0 27 chr6 142402315 142402461 -7114576 - B1_Mus1 SINE Alu 0 148 7 5 1671 882 128 0 0 chr6 142403163 142403382 -7113655 + (TG)n Simple_repeat Simple_repeat 1 219 0 5 1671 467 237 77 158 chr6 142403395 142403616 -7113421 - B3A SINE B2 -11 205 3 5 1671 26 50 0 0 chr6 142403850 142403890 -7113147 + AT_rich Low_complexity Low_complexity 1 40 0 5 1671 307 119 15 15 chr6 142404001 142404069 -7112968 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 1671 1570 194 84 14 chr6 142404172 142404543 -7112494 + MTD LTR MaLR 2 398 -21 5 1671 962 163 102 0 chr6 142405286 142405482 -7111555 + B3 SINE B2 1 216 0 5 1671 749 184 13 39 chr6 142405715 142405868 -7111169 - B1_Mur4 SINE Alu -1 149 1 5 1671 626 242 29 53 chr6 142407125 142407295 -7109742 + B3A SINE B2 33 198 0 5 1671 549 0 0 0 chr6 142408486 142408547 -7108490 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1671 325 116 14 14 chr6 142408547 142408617 -7108420 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1671 962 146 89 6 chr6 142409234 142409413 -7107624 - Lx4A LINE L1 0 7058 6865 5 1671 1290 221 89 69 chr6 142409944 142410293 -7106744 + ORR1E LTR MaLR 2 357 -2 5 1671 581 267 65 19 chr6 142410383 142410613 -7106424 - L1M2 LINE L1 -1890 4253 4022 5 1671 393 265 10 10 chr6 142411141 142411244 -7105793 - B3 SINE B2 -18 198 96 5 1671 237 254 0 0 chr6 142411241 142411296 -7105741 + ORR1E LTR MaLR 293 347 -12 5 1671 299 213 0 0 chr6 142411340 142411401 -7105636 - ID4_ SINE ID -22 61 1 5 1671 255 254 0 69 chr6 142412759 142412831 -7104206 + ID4 SINE ID 6 72 -11 5 1671 384 22 0 0 chr6 142412831 142412876 -7104161 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1671 851 146 27 14 chr6 142412934 142413080 -7103957 + B1_Mur3 SINE Alu 1 148 -1 5 1671 1385 72 16 16 chr6 142413616 142413800 -7103237 - B2_Mm2 SINE B2 -9 186 3 5 1671 781 194 6 6 chr6 142413990 142414166 -7102871 + CT-rich Low_complexity Low_complexity 3 178 0 5 1671 743 209 72 0 chr6 142414167 142414306 -7102731 - B1_Mur2 SINE Alu 0 149 1 5 1671 653 259 54 0 chr6 142414528 142414733 -7102304 - B3 SINE B2 0 216 1 5 1671 440 286 86 39 chr6 142414895 142415044 -7101993 + L1M2 LINE L1 4713 4869 -1274 5 1671 5619 75 24 66 chr6 142415044 142415882 -7101155 + RLTR13B4 LTR ERVK 1 803 0 5 1671 440 286 86 39 chr6 142415882 142415965 -7101072 + L1M2 LINE L1 4870 4956 -1187 5 1671 331 274 130 30 chr6 142416105 142416274 -7100763 + L1M2 LINE L1 5166 5351 -792 5 1671 327 264 263 6 chr6 142416361 142416537 -7100500 + B4 SINE B4 3 223 -69 5 1671 234 305 90 15 chr6 142416791 142416924 -7100113 + Lx8 LINE L1 5770 5912 -1561 5 1671 2895 160 4 4 chr6 142417571 142418061 -7098976 + Lx LINE L1 6161 6650 -4 5 1671 25 31 0 0 chr6 142418069 142418101 -7098936 + AT_rich Low_complexity Low_complexity 1 32 0 5 1671 751 245 36 0 chr6 142418198 142418390 -7098647 + B3 SINE B2 1 199 -17 5 1671 565 254 130 0 chr6 142418960 142419145 -7097892 + B3 SINE B2 8 216 0 5 1671 917 272 0 0 chr6 142419907 142420139 -7096898 - B4 SINE B4 -60 232 1 5 1671 1226 64 0 0 chr6 142420790 142420946 -7096091 + L1_Mus1 LINE L1 6412 6567 0 5 1671 236 30 30 0 chr6 142421533 142421566 -7095471 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1671 628 275 12 12 chr6 142422442 142422604 -7094433 + RSINE1 SINE B4 3 164 -1 5 1671 1149 61 0 26 chr6 142422630 142422768 -7094269 + B1_Mus2 SINE Alu 1 138 -9 5 1671 230 51 0 49 chr6 142422768 142422809 -7094228 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1671 1149 61 0 26 chr6 142422809 142422821 -7094216 + B1_Mus2 SINE Alu 139 147 0 5 1671 22 35 0 0 chr6 142422842 142422871 -7094166 + AT_rich Low_complexity Low_complexity 1 29 0 5 1671 1548 33 27 16 chr6 142423060 142423247 -7093790 - B2_Mm1a SINE B2 -4 189 1 5 1671 484 261 11 90 chr6 142423364 142423541 -7093496 + RSINE1 SINE B4 3 165 0 5 1671 212 0 0 35 chr6 142423547 142423576 -7093461 + (TAA)n Simple_repeat Simple_repeat 2 29 0 5 1671 451 286 110 22 chr6 142424606 142424788 -7092249 - B3A SINE B2 0 198 1 5 1671 248 177 31 46 chr6 142425123 142425134 -7091903 + polypurine Low_complexity Low_complexity 1 11 0 5 1671 336 24 0 0 chr6 142425134 142425175 -7091862 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 5 1671 248 177 31 46 chr6 142425175 142425228 -7091809 + polypurine Low_complexity Low_complexity 12 63 0 5 1671 1305 83 0 0 chr6 142425228 142425408 -7091629 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1671 1181 43 0 0 chr6 142425416 142425555 -7091482 + B1_Mm SINE Alu 2 140 -7 5 1671 631 58 39 0 chr6 142425559 142425662 -7091375 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 5 1671 423 0 0 0 chr6 142425662 142425709 -7091328 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 5 1671 509 189 19 0 chr6 142426140 142426246 -7090791 - B1_Mur2 SINE Alu -1 148 41 5 1671 282 203 69 42 chr6 142427531 142427603 -7089434 - B1F2 SINE Alu -66 83 10 5 1671 22 0 0 0 chr6 142427719 142427741 -7089296 + AT_rich Low_complexity Low_complexity 1 22 0 5 1671 1272 27 0 0 chr6 142427943 142428089 -7088948 - B1_Mus1 SINE Alu -2 146 1 5 1671 200 59 29 0 chr6 142428093 142428127 -7088910 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1671 207 0 0 0 chr6 142428201 142428224 -7088813 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1671 250 200 0 58 chr6 142428248 142428317 -7088720 - MTE2a LTR MaLR 0 379 315 5 1671 274 379 0 67 chr6 142428319 142428449 -7088588 + RSINE1 SINE B4 26 147 -18 5 1671 198 0 0 0 chr6 142428449 142428471 -7088566 + (TC)n Simple_repeat Simple_repeat 1 22 0 5 1671 274 379 0 67 chr6 142428471 142428490 -7088547 + RSINE1 SINE B4 148 165 0 5 1671 337 190 0 27 chr6 142428493 142428639 -7088398 + (CAGA)n Simple_repeat Simple_repeat 2 143 0 5 1671 449 233 60 0 chr6 142428681 142428797 -7088240 - MTE2a LTR MaLR -45 334 212 5 1671 279 200 41 41 chr6 142428810 142428883 -7088154 - MERVL_2A-int LTR ERVL -5564 197 125 6 1671 421 235 16 57 chr6 142429609 142429731 -7087306 - RMER12 LTR ERVK -107 1215 1099 6 1671 420 20 0 0 chr6 142429813 142429862 -7087175 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1671 204 40 0 0 chr6 142429877 142429902 -7087135 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1671 5289 101 41 26 chr6 142429902 142430779 -7086258 - RMER12 LTR ERVK -432 890 1 6 1671 844 196 63 11 chr6 142431843 142432034 -7085003 - B3 SINE B2 -11 205 5 6 1671 332 94 19 0 chr6 142432911 142432964 -7084073 + (GGGA)n Simple_repeat Simple_repeat 3 56 0 6 1671 234 154 0 0 chr6 142433114 142433153 -7083884 + tRNA-Arg-AGA tRNA tRNA 1 39 -37 6 1671 873 244 51 0 chr6 142433268 142433465 -7083572 - B3 SINE B2 -6 210 4 6 1671 930 184 59 5 chr6 142433740 142433926 -7083111 + B3 SINE B2 1 196 -20 6 1671 2975 52 0 25 chr6 142434687 142435083 -7081954 - L1Md_F2 LINE L1 0 6582 6197 6 1671 538 301 7 0 chr6 142435380 142435523 -7081514 + RSINE1 SINE B4 3 146 -19 6 1671 1138 55 21 0 chr6 142435587 142435732 -7081305 + B1_Mus1 SINE Alu 1 148 0 6 1671 452 36 6 0 chr6 142435751 142435813 -7081224 + L1Md_T LINE L1 6072 6135 -449 6 1671 641 208 123 21 chr6 142435923 142436045 -7080992 - B3 SINE B2 -8 208 81 6 1671 255 61 0 0 chr6 142436045 142436078 -7080959 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1671 641 208 123 21 chr6 142436078 142436142 -7080895 - B3 SINE B2 -136 80 5 6 1671 348 277 213 0 chr6 142436639 142436780 -7080257 + B3A SINE B2 2 172 -26 6 1671 459 303 62 0 chr6 142438283 142438461 -7078576 + B3A SINE B2 3 191 -7 6 1671 268 255 41 41 chr6 142438652 142438750 -7078287 + PB1D7 SINE Alu 22 119 -1 6 1671 354 138 31 0 chr6 142439482 142439547 -7077490 + B1_Mur3 SINE Alu 82 148 -1 6 1671 285 290 20 61 chr6 142439558 142439657 -7077380 - B3 SINE B2 -22 194 100 6 1671 210 176 0 0 chr6 142440013 142440064 -7076973 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1671 301 265 94 87 chr6 142440109 142440258 -7076779 - B4A SINE B4 -1 291 142 6 1671 673 272 36 5 chr6 142440385 142440577 -7076460 - ID_B1 SINE B4 -25 199 2 6 1671 553 265 16 62 chr6 142441424 142441617 -7075420 - B3A SINE B2 -14 184 1 6 1671 255 175 0 0 chr6 142442893 142442950 -7074087 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1671 624 279 35 0 chr6 142442953 142443125 -7073912 - B3A SINE B2 -20 178 1 6 1671 278 329 0 0 chr6 142443744 142443814 -7073223 + RSINE1 SINE B4 2 71 -94 6 1671 551 136 0 54 chr6 142443806 142443899 -7073138 + B1_Mur3 SINE Alu 58 145 -4 6 1671 1712 159 150 0 chr6 142444509 142444843 -7072194 + ORR1C2 LTR MaLR 1 384 0 6 1671 592 237 216 22 chr6 142445969 142446150 -7070887 - B3 SINE B2 0 216 1 6 1671 295 23 45 0 chr6 142446265 142446309 -7070728 + (TTA)n Simple_repeat Simple_repeat 1 46 0 6 1671 817 289 73 0 chr6 142446488 142446748 -7070289 - B4A SINE B4 -13 279 1 6 1671 351 243 27 0 chr6 142447320 142447394 -7069643 - B3A SINE B2 -119 79 4 6 1671 1414 44 66 0 chr6 142447413 142447595 -7069442 - B2_Mm2 SINE B2 0 195 2 6 1671 223 343 111 0 chr6 142447947 142448046 -7068991 + ID_B1 SINE B4 60 169 -55 6 1671 281 225 141 0 chr6 142447977 142448048 -7068989 + B1_Mus2 SINE Alu 11 91 -56 6 1671 719 148 102 0 chr6 142448065 142448193 -7068844 - B1_Mur1 SINE Alu -8 141 1 6 1671 241 289 63 13 chr6 142448725 142448839 -7068198 + B1F SINE Alu 2 149 0 6 1671 1502 53 0 50 chr6 142449128 142449327 -7067710 + B2_Mm1a SINE B2 2 190 -3 6 1671 559 202 193 0 chr6 142449522 142449641 -7067396 + B1_Mus1 SINE Alu 6 147 -1 6 1671 21 0 0 0 chr6 142449641 142449662 -7067375 + AT_rich Low_complexity Low_complexity 1 21 0 6 1671 796 277 102 34 chr6 142450006 142450302 -7066735 + ORR1E LTR MaLR 1 341 -29 6 1671 253 250 0 16 chr6 142451479 142451540 -7065497 - ID2 SINE ID 0 83 24 6 1671 297 308 32 21 chr6 142451851 142451868 -7065169 - B1F2 SINE Alu -54 95 4 6 1671 323 200 14 54 chr6 142451868 142451942 -7065095 - ID_B1 SINE B4 -69 155 85 6 1671 183 80 0 0 chr6 142451984 142452009 -7065028 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1671 704 250 55 11 chr6 142452241 142452423 -7064614 + B3 SINE B2 3 192 -24 6 1671 212 327 51 60 chr6 142452443 142452560 -7064477 + PB1D10 SINE Alu 2 117 0 6 1671 323 193 0 34 chr6 142452589 142452648 -7064389 + ID4_ SINE ID 16 72 -11 6 1671 198 209 0 0 chr6 142453065 142453108 -7063929 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1671 315 265 121 64 chr6 142453127 142453268 -7063769 + L1MC5 LINE L1 7782 7930 -31 6 1671 318 348 218 19 chr6 142453263 142453685 -7063352 + L1MC4 LINE L1 7225 7730 -312 6 1671 287 213 0 32 chr6 142455113 142455176 -7061861 + ID_B1 SINE B4 102 162 -62 6 1671 420 207 36 56 chr6 142456813 142456933 -7060104 + PB1D10 SINE Alu 4 120 0 6 1671 225 0 0 0 chr6 142457184 142457209 -7059828 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1671 369 0 0 0 chr6 142457209 142457249 -7059788 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 1671 614 185 0 61 chr6 142458152 142458284 -7058753 + B1_Mus2 SINE Alu 4 127 -20 6 1671 249 108 0 0 chr6 142458296 142458333 -7058704 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 6 1671 190 51 24 49 chr6 142458455 142458496 -7058541 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1671 931 178 144 20 chr6 142459524 142459719 -7057318 - URR1B DNA MER1_type -1 224 6 6 1671 274 311 93 69 chr6 142460222 142460426 -7056611 + RMER15 LTR ERVL 355 563 -12 6 1671 22 56 0 0 chr6 142461187 142461223 -7055814 + AT_rich Low_complexity Low_complexity 1 36 0 6 1671 231 288 0 17 chr6 142461226 142461286 -7055751 + CT-rich Low_complexity Low_complexity 2 60 0 6 1671 486 82 23 12 chr6 142461288 142461374 -7055663 + (TCC)n Simple_repeat Simple_repeat 1 87 0 6 1671 660 275 19 0 chr6 142461630 142461790 -7055247 + ID_B1 SINE B4 44 206 -18 6 1671 294 29 0 0 chr6 142461790 142461825 -7055212 + (TTG)n Simple_repeat Simple_repeat 1 35 0 6 1671 264 358 9 0 chr6 142462176 142462285 -7054752 + L2 LINE L2 2343 2452 -967 6 1671 345 174 0 0 chr6 142462365 142462434 -7054603 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1671 44 20 0 0 chr6 142462438 142462489 -7054548 + AT_rich Low_complexity Low_complexity 1 51 0 6 1671 796 267 28 14 chr6 142462492 142462705 -7054332 + B3 SINE B2 1 216 0 6 1671 200 149 21 0 chr6 142462810 142462857 -7054180 + G-rich Low_complexity Low_complexity 2 49 0 6 1671 378 304 30 37 chr6 142463006 142463170 -7053867 - RSINE1 SINE B4 -2 163 1 6 1671 2920 44 2 90 chr6 142463662 142464085 -7052952 - RLTR10 LTR ERVK -4 386 1 6 1671 467 258 0 16 chr6 142464179 142464429 -7052608 + (TG)n Simple_repeat Simple_repeat 1 245 0 6 1671 351 280 83 8 chr6 142465021 142465154 -7051883 - B1F1 SINE Alu -2 147 5 6 1671 543 228 158 23 chr6 142465451 142465725 -7051312 + ORR1D2 LTR MaLR 77 370 -4 6 1671 639 263 71 20 chr6 142465979 142466177 -7050860 + ID_B1 SINE B4 1 208 -16 6 1671 349 203 14 0 chr6 142466364 142466433 -7050604 + tRNA-Ala-GCY_ tRNA tRNA 3 72 -3 6 1671 2224 93 10 32 chr6 142466605 142466976 -7050061 + Lx2 LINE L1 6169 6827 -170 6 1671 960 241 5 30 chr6 142467265 142467466 -7049571 + ID_B1 SINE B4 14 209 -15 6 1671 226 246 100 14 chr6 142467919 142467989 -7049048 - ID4 SINE ID 0 83 8 6 1671 365 0 22 0 chr6 142468056 142468101 -7048936 + (TTA)n Simple_repeat Simple_repeat 2 47 0 6 1671 5583 169 24 18 chr6 142468104 142469147 -7047890 - Lx2B LINE L1 -28 6972 5924 6 1671 979 123 7 0 chr6 142469143 142469289 -7047748 + Lx5 LINE L1 5762 5908 -1142 6 1671 895 225 50 10 chr6 142469388 142469590 -7047447 + B3 SINE B2 1 210 -6 6 1671 225 211 0 19 chr6 142470050 142470103 -7046934 - ID4 SINE ID -28 55 4 6 1671 651 221 0 0 chr6 142470497 142470761 -7046276 + (TG)n Simple_repeat Simple_repeat 1 264 0 6 1671 447 19 0 0 chr6 142471719 142471771 -7045266 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1671 462 36 0 0 chr6 142472197 142472253 -7044784 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1671 497 359 29 25 chr6 142472253 142472533 -7044504 - Lx9 LINE L1 -233 7411 7131 6 1671 223 182 0 43 chr6 142472694 142472763 -7044274 + GA-rich Low_complexity Low_complexity 2 67 0 6 1671 180 152 0 0 chr6 142473194 142473227 -7043810 + CT-rich Low_complexity Low_complexity 2 34 0 6 1671 666 240 7 20 chr6 142473237 142473386 -7043651 - ID_B1 SINE B4 -2 222 76 6 1671 483 18 0 0 chr6 142473757 142473813 -7043224 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1671 312 83 0 0 chr6 142473813 142473861 -7043176 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1671 610 228 66 35 chr6 142473919 142474128 -7042909 + B3A SINE B2 1 216 0 6 1671 186 250 57 86 chr6 142474802 142474872 -7042165 + MIRm SINE MIR 121 188 -88 6 208 444 336 95 33 chr6 142475005 142475279 -7041758 + B4A SINE B4 2 292 0 6 1672 31 26 0 0 chr6 142475594 142475632 -7041405 + AT_rich Low_complexity Low_complexity 1 38 0 6 1672 640 280 40 0 chr6 142475831 142475981 -7041056 + MTEa LTR MaLR 4 159 -220 7 1672 789 68 0 0 chr6 142475993 142476110 -7040927 + (TC)n Simple_repeat Simple_repeat 2 118 0 7 1672 280 286 47 12 chr6 142476153 142476238 -7040799 + MTEa LTR MaLR 288 375 -4 7 1672 290 290 58 44 chr6 142477479 142477616 -7039421 + MIR SINE MIR 3 141 -121 7 1672 493 223 6 6 chr6 142477711 142477878 -7039159 + (TA)n Simple_repeat Simple_repeat 2 168 0 7 1672 390 286 19 43 chr6 142477911 142478098 -7038939 + PB1D10 SINE Alu 6 149 0 7 1672 531 0 0 0 chr6 142478241 142478300 -7038737 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 1672 366 319 27 21 chr6 142478314 142478500 -7038537 - B4A SINE B4 -4 288 102 7 1672 914 254 188 17 chr6 142478671 142479003 -7038034 - MTD LTR MaLR -14 405 13 7 1672 300 280 13 0 chr6 142479750 142479825 -7037212 + B3 SINE B2 1 76 -140 7 1672 480 105 0 0 chr6 142480118 142480194 -7036843 + (TAG)n Simple_repeat Simple_repeat 1 76 0 7 1672 1360 240 115 33 chr6 142480241 142480667 -7036370 - Lx8 LINE L1 -2 7471 7011 7 1672 281 307 7 26 chr6 142480667 142480821 -7036216 + (TGG)n Simple_repeat Simple_repeat 2 152 0 7 1672 769 237 40 0 chr6 142480840 142481013 -7036024 - Lx8 LINE L1 -519 6954 6775 7 1672 185 140 0 23 chr6 142481639 142481683 -7035354 + CT-rich Low_complexity Low_complexity 2 44 0 7 1672 651 246 130 5 chr6 142481725 142481917 -7035120 + B3 SINE B2 1 216 0 7 1672 989 244 123 6 chr6 142482495 142482812 -7034225 - Lx9 LINE L1 0 7644 7291 7 1672 499 187 8 86 chr6 142482962 142483001 -7034036 - ID_B1 SINE B4 0 224 193 7 1672 2420 79 32 0 chr6 142483001 142483317 -7033720 - ORR1A2 LTR MaLR -1 326 1 7 1672 499 187 8 86 chr6 142483317 142483394 -7033643 - ID_B1 SINE B4 -32 192 117 7 1672 3549 28 0 0 chr6 142483880 142484276 -7032761 + MTA_Mm LTR MaLR 1 396 0 7 1672 956 223 21 6 chr6 142484465 142484670 -7032367 + B3 SINE B2 2 198 0 7 1672 564 304 17 80 chr6 142484714 142484889 -7032148 - RSINE1 SINE B4 0 165 2 7 1672 196 333 13 13 chr6 142485113 142485192 -7031845 - L2 LINE L2 -808 2611 2533 7 1672 192 152 0 0 chr6 142485307 142485340 -7031697 + (TTA)n Simple_repeat Simple_repeat 2 34 0 7 1672 951 78 0 0 chr6 142485582 142485711 -7031326 + (CAG)n Simple_repeat Simple_repeat 1 129 0 7 1672 825 264 2 38 chr6 142485716 142485910 -7031127 + B3 SINE B2 7 192 -1 7 1672 214 292 116 58 chr6 142485915 142486053 -7030984 - L2 LINE L2 -1518 1901 1756 7 1672 218 309 29 0 chr6 142486200 142486268 -7030769 - L2 LINE L2 -1878 1541 1472 7 1672 284 346 172 29 chr6 142486369 142486892 -7030145 - L2 LINE L2 -2187 1232 635 7 1672 2199 91 36 0 chr6 142487799 142488107 -7028930 + ORR1A2 LTR MaLR 1 319 -8 7 1672 359 364 15 0 chr6 142488110 142488242 -7028795 - Tigger5 DNA MER2_type -2271 135 2 7 1672 323 225 70 0 chr6 142488329 142488400 -7028637 + B1F SINE Alu 2 77 -72 7 1672 1248 229 101 59 chr6 142489569 142489944 -7027093 + MTD LTR MaLR 9 399 -20 7 1672 554 317 5 91 chr6 142490101 142490299 -7026738 - B4A SINE B4 0 292 112 7 1672 645 49 0 0 chr6 142490495 142490576 -7026461 + (TCCC)n Simple_repeat Simple_repeat 2 82 0 7 1672 280 197 76 0 chr6 142491505 142491571 -7025466 - ID4 SINE ID -11 72 2 7 1672 1232 260 55 29 chr6 142491597 142491942 -7025095 + ORR1E LTR MaLR 1 354 -5 7 1672 776 245 122 0 chr6 142492999 142493244 -7023793 - B4A SINE B4 -16 276 2 7 1672 281 264 93 19 chr6 142493463 142493571 -7023466 - ORR1E LTR MaLR -222 137 22 7 1672 861 197 115 16 chr6 142495068 142495259 -7021778 + B3 SINE B2 1 210 -6 7 1672 493 302 0 23 chr6 142495745 142495877 -7021160 - ID_B1 SINE B4 0 224 96 7 1672 880 223 75 0 chr6 142495914 142496102 -7020935 - B3 SINE B2 0 216 15 7 1672 981 170 133 0 chr6 142496285 142496473 -7020564 - B3 SINE B2 -1 215 3 7 1672 703 259 8 0 chr6 142496520 142496651 -7020386 - RSINE1 SINE B4 -28 137 6 7 1672 303 280 125 39 chr6 142496664 142496768 -7020269 - L1MEg LINE L1 -5372 712 600 7 1672 468 290 170 76 chr6 142497021 142497324 -7019713 - ORR1E LTR MaLR -28 331 1 7 1672 326 265 28 84 chr6 142497324 142497425 -7019612 - MTEa-int LTR MaLR -53 1527 1433 7 1672 252 0 0 0 chr6 142497551 142497579 -7019458 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1672 567 0 0 0 chr6 142497579 142497641 -7019396 + (GA)n Simple_repeat Simple_repeat 1 63 0 7 1672 521 311 287 16 chr6 142497641 142498068 -7018969 - MTEa-int LTR MaLR -165 1415 875 7 1672 469 248 70 0 chr6 142498079 142498208 -7018829 - B1F SINE Alu -9 140 3 7 1672 792 318 133 25 chr6 142498286 142498728 -7018309 - MTEa-int LTR MaLR -1090 490 1 7 1672 278 68 45 0 chr6 142498732 142498776 -7018261 - MTEa LTR MaLR -8 371 326 7 1672 344 345 92 26 chr6 142498973 142499276 -7017761 - ORR1E LTR MaLR -9 350 16 7 1672 1120 248 29 0 chr6 142500599 142500873 -7016164 - MTEa LTR MaLR -14 365 84 1 1672 407 286 99 30 chr6 142501069 142501271 -7015766 - B3 SINE B2 0 216 1 2 1672 1256 245 93 8 chr6 142501273 142501651 -7015386 - MTD LTR MaLR 0 419 10 3 1672 21 36 0 0 chr6 142502010 142502038 -7014999 + AT_rich Low_complexity Low_complexity 1 28 0 4 1672 2242 144 62 18 chr6 142502067 142502505 -7014532 + RMER4A LTR ERVK 1 457 -9 5 1672 951 135 0 0 chr6 142502506 142502662 -7014375 + (TG)n Simple_repeat Simple_repeat 1 156 0 6 1672 456 264 109 0 chr6 142502674 142502784 -7014253 - RSINE1 SINE B4 -42 123 2 7 1672 1377 229 147 14 chr6 142502919 142503287 -7013750 + MTD LTR MaLR 1 417 -2 8 1672 324 143 0 0 chr6 142503500 142503556 -7013481 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1672 528 16 0 0 chr6 142504136 142504197 -7012840 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1672 603 0 0 0 chr6 142504197 142504263 -7012774 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1672 578 243 35 0 chr6 142504264 142504408 -7012629 - B3 SINE B2 -67 149 1 1 1672 396 0 0 0 chr6 142504795 142504839 -7012198 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1672 24 91 0 0 chr6 142506090 142506156 -7010881 + AT_rich Low_complexity Low_complexity 1 66 0 1 1672 642 287 102 4 chr6 142506206 142506391 -7010646 - B3A SINE B2 -10 185 1 1 1672 709 256 60 5 chr6 142506726 142506926 -7010111 - B3 SINE B2 -5 211 1 1 1672 747 311 46 19 chr6 142508372 142508631 -7008406 + B4A SINE B4 15 280 -12 1 1672 330 123 0 0 chr6 142509145 142509202 -7007835 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 1672 419 277 136 17 chr6 142509608 142509784 -7007253 + B3 SINE B2 1 197 -19 1 1672 577 276 19 18 chr6 142509790 142509960 -7007077 - ORR1E LTR MaLR -88 291 96 2 1672 682 217 25 6 chr6 142510324 142510482 -7006555 + B3 SINE B2 1 161 -55 2 1672 232 209 132 15 chr6 142510482 142510550 -7006487 + B1F SINE Alu 53 128 -21 2 1672 552 30 0 0 chr6 142510559 142510625 -7006412 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1672 6068 185 39 17 chr6 142510740 142511919 -7005118 + Lx5 LINE L1 5846 7050 0 2 1672 476 14 55 0 chr6 142512107 142512180 -7004857 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1672 539 239 95 30 chr6 142512195 142512363 -7004674 - B4 SINE B4 -16 276 98 2 1672 360 255 31 0 chr6 142513224 142513322 -7003715 - ID_B1 SINE B4 -118 106 6 2 1672 203 0 0 36 chr6 142518255 142518283 -6998754 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 1672 23 0 0 0 chr6 142520228 142520251 -6996786 + AT_rich Low_complexity Low_complexity 1 23 0 2 1672 780 245 64 15 chr6 142521212 142521415 -6995622 - ID_B1 SINE B4 0 224 12 3 1672 500 295 7 7 chr6 142521454 142521594 -6995443 - B1F SINE Alu -9 140 1 3 1672 1077 198 19 14 chr6 142521738 142521930 -6995107 + B3 SINE B2 1 191 -25 3 1672 182 62 0 30 chr6 142521930 142521963 -6995074 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1672 1077 198 19 14 chr6 142521963 142521985 -6995052 + B3 SINE B2 192 216 0 3 1672 23 0 0 0 chr6 142521996 142522019 -6995018 + AT_rich Low_complexity Low_complexity 1 23 0 3 1672 561 237 264 48 chr6 142522391 142522701 -6994336 + MTEa LTR MaLR 3 379 0 3 1672 201 74 0 0 chr6 142522766 142522793 -6994244 + (CGTG)n Simple_repeat Simple_repeat 1 27 0 3 1672 1035 142 0 0 chr6 142522817 142523273 -6993764 + (TG)n Simple_repeat Simple_repeat 1 456 0 3 1672 1110 122 0 0 chr6 142523309 142523489 -6993548 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1672 360 0 0 0 chr6 142523919 142523959 -6993078 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1672 462 322 73 27 chr6 142524303 142524497 -6992540 + B4 SINE B4 14 218 -74 3 1672 1882 67 15 27 chr6 142524497 142524759 -6992278 + L1Md_F2 LINE L1 6324 6582 0 4 1672 462 322 73 27 chr6 142524759 142524784 -6992253 + B4 SINE B4 219 243 -49 3 1672 744 279 115 8 chr6 142525564 142525824 -6991213 - B4 SINE B4 0 292 5 4 1672 374 264 0 28 chr6 142526023 142526132 -6990905 - L1MA4A LINE L1 -380 5923 5818 4 1672 405 307 79 13 chr6 142526159 142526311 -6990726 - RSINE1 SINE B4 0 165 4 4 1672 627 170 4 0 chr6 142527183 142527431 -6989606 + GA-rich Low_complexity Low_complexity 1 249 0 4 1672 3303 195 44 12 chr6 142527654 142528565 -6988472 - Lx6 LINE L1 -1319 6141 5198 4 1672 687 260 35 23 chr6 142528574 142528717 -6988320 + Lx5 LINE L1 6172 6311 -739 4 1672 459 0 0 0 chr6 142528717 142528768 -6988269 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 4 1672 687 260 35 23 chr6 142528768 142528797 -6988240 + Lx5 LINE L1 6312 6346 -704 4 1672 1329 248 64 35 chr6 142528805 142529148 -6987889 + Lx5 LINE L1 6480 6832 -218 4 1672 192 40 0 0 chr6 142529363 142529388 -6987649 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1672 357 232 0 35 chr6 142529626 142529711 -6987326 + ID4 SINE ID 1 82 -1 4 1672 601 305 48 0 chr6 142530642 142530809 -6986228 - B4 SINE B4 -2 290 116 5 1672 531 266 8 8 chr6 142530833 142530958 -6986079 - B1_Mur1 SINE Alu -19 130 6 5 1672 494 323 34 67 chr6 142530849 142531058 -6985979 - B4 SINE B4 -88 204 3 5 1672 33 43 0 0 chr6 142531292 142531339 -6985698 + AT_rich Low_complexity Low_complexity 1 47 0 5 1672 400 246 167 0 chr6 142531442 142531580 -6985457 + B3A SINE B2 3 163 -35 5 1672 564 15 0 0 chr6 142531581 142531646 -6985391 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1672 711 278 81 93 chr6 142532106 142532227 -6984810 - Lx8 LINE L1 0 7473 7355 5 1672 1172 101 0 6 chr6 142532227 142532406 -6984631 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 1672 711 278 81 93 chr6 142532406 142532693 -6984344 - Lx8 LINE L1 -119 7354 7070 5 1672 317 329 0 0 chr6 142534406 142534543 -6982494 + (CAGCG)n Simple_repeat Simple_repeat 3 139 0 5 1672 423 322 17 0 chr6 142534705 142534820 -6982217 - B3A SINE B2 -23 175 59 5 1672 213 184 60 20 chr6 142535901 142535951 -6981086 + B1F1 SINE Alu 48 99 -50 6 1672 312 27 0 0 chr6 142537939 142537976 -6979061 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1672 1221 61 0 0 chr6 142538436 142538583 -6978454 + B1_Mus1 SINE Alu 1 147 -1 6 1672 285 98 0 0 chr6 142539601 142539642 -6977395 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1672 1043 50 0 0 chr6 142539642 142539782 -6977255 - B1_Mus1 SINE Alu 0 148 9 6 1672 528 59 0 0 chr6 142540648 142540716 -6976321 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1672 22 35 0 0 chr6 142541136 142541165 -6975872 + AT_rich Low_complexity Low_complexity 1 29 0 6 1672 355 198 204 80 chr6 142543554 142543598 -6973439 - B3A SINE B2 0 198 165 6 1672 758 11 0 11 chr6 142543598 142543690 -6973347 + (TA)n Simple_repeat Simple_repeat 2 92 0 6 1672 355 198 204 80 chr6 142543690 142543821 -6973216 - B3A SINE B2 -34 164 1 6 1672 397 318 53 8 chr6 142544539 142544672 -6972365 + B1F2 SINE Alu 2 140 -9 6 1672 220 72 23 45 chr6 142545110 142545154 -6971883 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 7 1672 535 299 157 40 chr6 142545156 142545609 -6971428 - L1MA9 LINE L1 -282 6009 5504 7 1672 227 352 54 21 chr6 142545612 142545798 -6971239 + L1MA7 LINE L1 6060 6251 -40 7 1672 1014 162 0 8 chr6 142545807 142546167 -6970870 + (TG)n Simple_repeat Simple_repeat 1 357 0 7 1672 251 336 52 17 chr6 142546277 142546392 -6970645 - MIRb SINE MIR -149 119 1 7 1672 628 244 81 6 chr6 142547290 142547451 -6969586 + B3 SINE B2 2 174 -42 7 1672 1354 182 48 24 chr6 142547930 142548263 -6968774 - Lx9 LINE L1 0 7644 7304 7 1672 306 67 0 0 chr6 142548404 142548449 -6968588 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 7 1672 2539 30 0 0 chr6 142548490 142548787 -6968250 + L1Md_F2 LINE L1 6270 6566 -16 7 1672 236 100 25 0 chr6 142548810 142548850 -6968187 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1672 279 337 56 22 chr6 142548863 142549042 -6967995 + MIRb SINE MIR 20 204 -64 8 1672 21 0 0 0 chr6 142549596 142549617 -6967420 + AT_rich Low_complexity Low_complexity 1 21 0 8 1672 366 336 35 0 chr6 142550131 142550244 -6966793 - RSINE1 SINE B4 -15 150 34 8 1672 3599 105 6 0 chr6 142550705 142551218 -6965819 - Lx2 LINE L1 0 6997 6482 8 1672 520 147 11 0 chr6 142552383 142552478 -6964559 + Lx2A LINE L1 6902 6997 -11 8 1672 449 198 43 11 chr6 142552989 142553081 -6963956 + PB1D10 SINE Alu 5 99 -18 8 1672 819 112 6 18 chr6 142553089 142553252 -6963785 + (TAAA)n Simple_repeat Simple_repeat 4 164 0 8 1672 449 275 45 85 chr6 142553877 142554056 -6962981 + B3A SINE B2 8 180 -18 8 1672 468 62 0 0 chr6 142554056 142554120 -6962917 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1672 449 275 45 85 chr6 142554120 142554139 -6962898 + B3A SINE B2 181 198 0 8 1672 248 70 23 0 chr6 142555268 142555311 -6961726 + (TAG)n Simple_repeat Simple_repeat 1 44 0 8 1672 195 321 83 19 chr6 142555440 142555548 -6961489 + MIR SINE MIR 52 166 -96 9 1672 289 225 127 48 chr6 142556099 142556225 -6960812 + B2_Mm2 SINE B2 48 183 -12 9 1672 182 91 30 0 chr6 142557175 142557208 -6959829 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1672 616 103 0 18 chr6 142557792 142557901 -6959136 + (TG)n Simple_repeat Simple_repeat 2 108 0 9 1672 222 363 71 24 chr6 142557903 142558030 -6959007 - B1_Mur1 SINE Alu -16 133 1 9 1672 416 263 110 0 chr6 142557929 142558047 -6958990 - B4 SINE B4 -96 196 66 9 1672 627 14 0 0 chr6 142559019 142559091 -6957946 + (TG)n Simple_repeat Simple_repeat 1 72 0 9 1672 229 320 90 0 chr6 142559093 142559193 -6957844 - B4A SINE B4 -79 213 105 9 1672 855 167 41 124 chr6 142559197 142559518 -6957519 + RMER17B LTR ERVK 16 440 -518 9 1672 709 273 77 5 chr6 142560489 142560518 -6956519 - B3 SINE B2 -7 209 166 9 1672 423 0 0 0 chr6 142560518 142560565 -6956472 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1672 709 273 77 5 chr6 142560565 142560730 -6956307 - B3 SINE B2 -51 165 1 9 1672 722 280 53 102 chr6 142561893 142562292 -6954745 + MTE2a LTR MaLR 15 403 -16 1 1672 191 200 25 0 chr6 142564915 142564955 -6952082 - L2a LINE L2 -44 3382 3342 1 1672 771 92 0 0 chr6 142565554 142565663 -6951374 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 1672 507 253 102 43 chr6 142565895 142566081 -6950956 - B3A SINE B2 0 198 2 1 1672 456 19 0 0 chr6 142566592 142566645 -6950392 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1672 196 333 35 41 chr6 142567325 142567497 -6949540 + L2 LINE L2 2728 2898 -521 1 1672 1042 60 13 13 chr6 142568649 142568800 -6948237 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1 1672 492 243 0 93 chr6 142568807 142568957 -6948080 - ID_B1 SINE B4 -7 217 82 1 1672 7006 135 19 18 chr6 142569449 142570717 -6946320 + Lx5 LINE L1 4668 5935 -1115 1 1672 266 259 0 0 chr6 142570894 142570952 -6946085 - ID_B1 SINE B4 -80 144 87 1 1672 291 309 0 23 chr6 142571574 142571660 -6945377 - PB1D7 SINE Alu -2 118 35 1 1672 897 178 8 4 chr6 142572914 142573366 -6943671 + GA-rich Low_complexity Low_complexity 1 453 0 1 1672 265 297 0 0 chr6 142575370 142575434 -6941603 + B4A SINE B4 229 292 0 1 1672 219 139 0 0 chr6 142575434 142575470 -6941567 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1672 214 254 16 0 chr6 142575484 142575547 -6941490 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1672 321 148 19 0 chr6 142576586 142576640 -6940397 + B3 SINE B2 2 56 -160 1 1672 473 254 7 104 chr6 142577360 142577514 -6939523 + ID_B1 SINE B4 85 223 -1 1 1672 1111 39 0 43 chr6 142577524 142577710 -6939327 + (GGGGA)n Simple_repeat Simple_repeat 3 180 0 1 1672 203 312 0 30 chr6 142577710 142577765 -6939272 + polypurine Low_complexity Low_complexity 11 64 0 1 1672 405 387 60 55 chr6 142577820 142578454 -6938583 + MLT1J-int LTR MaLR 679 1315 -72 1 1672 9738 124 84 8 chr6 142579438 142580503 -6936534 - Lx2B LINE L1 -1081 5919 4786 1 1672 681 76 0 0 chr6 142580503 142580595 -6936442 + (CAGTT)n Simple_repeat Simple_repeat 1 92 0 1 1672 9738 126 62 10 chr6 142580595 142581178 -6935859 - Lx2B LINE L1 -1092 4785 4153 1 1672 429 243 0 0 chr6 142583846 142583990 -6933047 + (TG)n Simple_repeat Simple_repeat 2 145 0 1 1672 270 179 0 0 chr6 142584011 142584067 -6932970 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1672 760 234 43 79 chr6 142584067 142584333 -6932704 - B4A SINE B4 0 292 24 1 1672 1185 72 5 4 chr6 142585489 142585652 -6931385 + L1Md_F2 LINE L1 5445 5615 -676 1 1672 8296 48 0 3 chr6 142585652 142586651 -6930386 + L1Md_F2 LINE L1 5587 6582 0 1 1672 501 308 106 28 chr6 142586826 142587043 -6929994 + B4A SINE B4 49 282 -10 1 1672 465 19 0 0 chr6 142587061 142587115 -6929922 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1672 2005 125 0 51 chr6 142587124 142587460 -6929577 + ORR1A2 LTR MaLR 1 319 -8 1 1672 381 43 0 0 chr6 142587502 142587549 -6929488 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 1 1672 22 70 0 0 chr6 142588589 142588632 -6928405 + AT_rich Low_complexity Low_complexity 1 43 0 1 1672 203 262 0 16 chr6 142588785 142588847 -6928190 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 1 1672 279 0 0 0 chr6 142589355 142589386 -6927651 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1 1672 366 190 12 25 chr6 142589954 142590035 -6927002 + BC1_Mm scRNA scRNA 3 82 -70 1 1672 243 61 0 0 chr6 142590418 142590451 -6926586 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1672 313 247 0 25 chr6 142590992 142591071 -6925966 + GA-rich Low_complexity Low_complexity 3 79 0 1 1672 374 329 12 47 chr6 142591295 142591467 -6925570 + MTD LTR MaLR 6 171 -248 1 1672 447 308 14 34 chr6 142592083 142592231 -6924806 + RSINE1 SINE B4 2 146 -19 1 1672 243 0 0 0 chr6 142593112 142593139 -6923898 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1672 23 0 0 0 chr6 142593188 142593211 -6923826 + AT_rich Low_complexity Low_complexity 1 23 0 1 1672 686 249 46 0 chr6 142593228 142593401 -6923636 - B3A SINE B2 -16 182 2 1 1672 226 271 26 63 chr6 142593499 142593673 -6923364 - MIR SINE MIR -14 254 86 1 1672 314 302 16 25 chr6 142594568 142594690 -6922347 + C-rich Low_complexity Low_complexity 1 121 0 1 1672 240 204 0 0 chr6 142595455 142595504 -6921533 + Lx7 LINE L1 7629 7677 -19 1 1672 309 315 38 8 chr6 142596253 142596384 -6920653 - B1F SINE Alu 0 149 15 1 1672 405 215 11 11 chr6 142597813 142597907 -6919130 + RSINE1 SINE B4 2 95 -70 1 1672 321 26 0 0 chr6 142598339 142598377 -6918660 + (GCTG)n Simple_repeat Simple_repeat 1 38 0 1 1672 1145 101 6 0 chr6 142598377 142598556 -6918481 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 1 1672 276 340 10 10 chr6 142598567 142598671 -6918366 - PB1D10 SINE Alu -8 109 6 1 1672 953 284 92 25 chr6 142600660 142601017 -6916020 + MTD LTR MaLR 18 398 -21 1 1672 320 275 0 56 chr6 142601220 142601345 -6915692 + B1_Mur2 SINE Alu 34 149 0 1 1672 362 79 16 0 chr6 142601345 142601408 -6915629 + (CAAAA)n Simple_repeat Simple_repeat 1 64 0 1 1672 325 265 0 30 chr6 142601965 142602066 -6914971 - L1MB1 LINE L1 -1723 4417 4320 1 1672 297 299 39 49 chr6 142602058 142602262 -6914775 + L1MB1 LINE L1 4401 4602 -1538 1 1672 677 321 58 17 chr6 142602337 142602818 -6914219 + L1MB1 LINE L1 4800 5300 -840 1 1672 647 292 90 37 chr6 142602812 142603020 -6914017 + L1MB1 LINE L1 5546 5760 -408 1 1672 1149 173 131 119 chr6 142603020 142603408 -6913629 + RLTR9C LTR ERVK 1 393 0 1 1672 647 292 90 37 chr6 142603408 142603664 -6913373 + L1MB1 LINE L1 5761 6034 -134 1 1672 553 316 50 27 chr6 142603838 142604137 -6912900 + Lx8 LINE L1 6987 7292 -181 1 1672 469 300 77 5 chr6 142604717 142604938 -6912099 + B4A SINE B4 46 282 -10 1 1672 234 0 0 0 chr6 142604995 142605021 -6912016 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1672 525 278 52 21 chr6 142605346 142605489 -6911548 + B3A SINE B2 1 147 -51 1 1672 333 0 0 0 chr6 142605489 142605526 -6911511 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1672 459 0 0 0 chr6 142605526 142605576 -6911461 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1672 525 278 52 21 chr6 142605576 142605622 -6911415 + B3A SINE B2 148 196 -2 1 1672 256 159 45 45 chr6 142606049 142606115 -6910922 + RMER15 LTR ERVL 1 66 -509 1 3 955 267 94 0 chr6 142606234 142606511 -6910526 + RMER15 LTR ERVL 273 575 0 1 1673 795 117 92 28 chr6 142606697 142606838 -6910199 + B1_Mur4 SINE Alu 1 150 0 1 1673 204 40 0 0 chr6 142606838 142606863 -6910174 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 1 1673 310 221 49 31 chr6 142607373 142607489 -6909548 + B4A SINE B4 140 263 -29 1 1673 318 87 0 0 chr6 142607530 142607576 -6909461 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1673 504 0 0 0 chr6 142607576 142607631 -6909406 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1673 776 189 154 0 chr6 142607676 142607851 -6909186 + B3 SINE B2 5 206 -10 1 1673 33 25 0 0 chr6 142607854 142607894 -6909143 + AT_rich Low_complexity Low_complexity 1 40 0 1 1673 453 319 90 6 chr6 142609201 142609255 -6907782 - B3A SINE B2 -17 181 125 1 1673 666 37 0 0 chr6 142609255 142609336 -6907701 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1673 453 319 90 6 chr6 142609336 142609448 -6907589 - B3A SINE B2 -74 124 1 1 1673 180 0 0 0 chr6 142609526 142609546 -6907491 + (CAGC)n Simple_repeat Simple_repeat 2 21 0 1 1673 1193 41 7 14 chr6 142609968 142610116 -6906921 - B1_Mus2 SINE Alu 0 147 1 1 1673 931 314 10 3 chr6 142610220 142610508 -6906529 - B4A SINE B4 0 292 3 1 1673 338 216 97 18 chr6 142610742 142610955 -6906082 + (CAGC)n Simple_repeat Simple_repeat 1 229 0 1 1673 310 213 75 57 chr6 142611032 142611191 -6905846 + (CAGC)n Simple_repeat Simple_repeat 1 162 0 1 1673 361 87 0 55 chr6 142611355 142611428 -6905609 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 1 1673 204 324 113 40 chr6 142611431 142611608 -6905429 + L2 LINE L2 2635 2824 -595 1 1673 510 200 38 0 chr6 142611614 142611719 -6905318 + ID_B1 SINE B4 102 210 -14 1 1673 366 227 78 70 chr6 142611719 142611741 -6905296 + B1F SINE Alu 21 148 -1 1 1673 241 24 23 47 chr6 142612118 142612161 -6904876 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 1 1673 1192 61 0 7 chr6 142612161 142612309 -6904728 - B1_Mus1 SINE Alu 0 148 2 1 1673 876 276 103 24 chr6 142613766 142614136 -6902901 + MTD LTR MaLR 9 405 -14 1 1673 587 280 46 36 chr6 142615350 142615546 -6901491 - B3A SINE B2 0 198 1 1 1673 572 248 21 7 chr6 142616016 142616158 -6900879 - ID_B1 SINE B4 -1 223 80 1 1673 677 162 0 8 chr6 142616179 142616297 -6900740 - B3 SINE B2 0 216 100 1 1673 2326 224 22 13 chr6 142618647 142619109 -6897928 + Lx6 LINE L1 6823 7288 -172 1 1673 343 320 31 15 chr6 142619183 142619313 -6897724 + Lx7 LINE L1 7183 7314 -382 1 1673 2377 33 0 0 chr6 142619337 142619612 -6897425 - L1Md_T LINE L1 0 6582 6308 1 1673 22 88 0 0 chr6 142619754 142619811 -6897226 + AT_rich Low_complexity Low_complexity 1 57 0 1 1673 528 348 45 5 chr6 142620777 142620976 -6896061 + MER20 DNA MER1_type 11 217 -2 1 1673 673 228 87 16 chr6 142621893 142622076 -6894961 - B3 SINE B2 -13 203 8 1 1673 491 263 8 0 chr6 142622072 142622190 -6894847 - B1F SINE Alu -21 128 10 1 1673 1088 97 0 14 chr6 142623124 142623271 -6893766 + B1_Mus2 SINE Alu 2 146 -1 1 1673 602 224 12 37 chr6 142623448 142623610 -6893427 + RSINE1 SINE B4 8 165 0 1 1673 235 238 0 52 chr6 142624524 142624679 -6892358 + (CATA)n Simple_repeat Simple_repeat 4 150 0 1 1673 325 309 10 0 chr6 142624683 142624780 -6892257 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 1673 822 199 20 7 chr6 142626632 142626779 -6890258 + B1_Mur2 SINE Alu 1 149 0 1 1673 601 343 68 3 chr6 142626870 142627221 -6889816 + L1MA4 LINE L1 5558 5931 -369 1 1673 547 189 54 0 chr6 142627475 142627586 -6889451 + B1_Mur1 SINE Alu 2 118 -31 1 1673 4412 80 0 10 chr6 142628037 142628618 -6888419 - L1_Mus4 LINE L1 -2 6634 6060 1 1673 291 361 41 8 chr6 142629020 142629034 -6888003 + B4A SINE B4 74 91 -201 2 1673 491 261 9 18 chr6 142629034 142629147 -6887890 + B1F1 SINE Alu 3 114 -35 2 1673 22 0 0 0 chr6 142629577 142629599 -6887438 + AT_rich Low_complexity Low_complexity 1 22 0 2 1673 312 74 0 0 chr6 142629630 142629683 -6887354 + B1_Mm SINE Alu 59 138 -9 2 1673 194 0 39 0 chr6 142629683 142629709 -6887328 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1673 255 181 42 0 chr6 142631091 142631163 -6885874 + G-rich Low_complexity Low_complexity 3 77 0 2 1673 379 298 0 8 chr6 142631666 142631788 -6885249 - B4 SINE B4 -76 216 96 2 1673 474 145 8 39 chr6 142632121 142632250 -6884787 + CT-rich Low_complexity Low_complexity 3 127 0 2 1673 342 0 0 0 chr6 142632397 142632435 -6884602 + (CAA)n Simple_repeat Simple_repeat 1 38 0 2 1673 525 16 0 0 chr6 142632688 142632750 -6884287 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1673 625 245 12 31 chr6 142632896 142633056 -6883981 + RSINE1 SINE B4 4 160 -5 2 1673 1506 179 16 148 chr6 142633061 142633486 -6883551 + ORR1D1 LTR MaLR 6 374 0 2 1673 655 290 6 12 chr6 142634002 142634166 -6882871 + RSINE1 SINE B4 3 165 0 2 1673 254 229 21 0 chr6 142634167 142634233 -6882804 + ORR1D1 LTR MaLR 1 68 -310 2 1673 562 240 127 12 chr6 142634470 142634643 -6882394 + B4 SINE B4 3 195 -97 2 1673 227 242 15 0 chr6 142634941 142635007 -6882030 + Lx8 LINE L1 7405 7471 -2 2 1673 757 285 10 15 chr6 142635221 142635424 -6881613 - B3 SINE B2 -10 206 5 2 1673 698 75 9 0 chr6 142636759 142636865 -6880172 + (CA)n Simple_repeat Simple_repeat 1 107 0 2 1673 602 265 0 33 chr6 142636867 142637027 -6880010 + ORR1D1 LTR MaLR 37 194 -184 2 1673 300 148 0 0 chr6 142637059 142637120 -6879917 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1673 583 179 110 43 chr6 142637143 142637212 -6879825 + ORR1D1 LTR MaLR 164 228 -146 2 1673 324 0 0 0 chr6 142637212 142637248 -6879789 + (CCTG)n Simple_repeat Simple_repeat 3 38 0 2 1673 583 179 110 43 chr6 142637248 142637341 -6879696 + ORR1D1 LTR MaLR 229 336 -38 2 1673 938 259 100 22 chr6 142637803 142638208 -6878829 - L1M2 LINE L1 -1169 4974 4506 2 1673 235 280 80 0 chr6 142638528 142638628 -6878409 + L1ME3 LINE L1 2845 2952 -3194 2 1673 360 322 92 29 chr6 142639673 142639989 -6877048 + L1ME3 LINE L1 5608 5943 -219 2 1673 252 312 85 15 chr6 142640158 142640428 -6876609 + L1ME2z LINE L1 6141 6429 -15 2 1673 472 226 38 0 chr6 142641823 142641929 -6875108 - B1_Mur2 SINE Alu -39 110 1 2 1673 340 325 109 49 chr6 142642535 142642800 -6874237 + B4A SINE B4 1 281 -11 2 1673 405 295 54 66 chr6 142643653 142643820 -6873217 - B4A SINE B4 -126 166 2 2 1673 651 218 64 43 chr6 142643909 142644096 -6872941 + B3A SINE B2 2 192 -6 2 1673 793 267 110 0 chr6 142644955 142645191 -6871846 - MTD LTR MaLR -7 412 151 2 1673 260 282 77 0 chr6 142645182 142645260 -6871777 + MTE2a LTR MaLR 269 352 -27 2 1673 305 300 48 35 chr6 142645332 142645477 -6871560 + B1F SINE Alu 3 149 0 2 1673 495 205 24 57 chr6 142645603 142645727 -6871310 - PB1D7 SINE Alu 0 120 1 2 1673 303 96 0 0 chr6 142646532 142646584 -6870453 + (A)n Simple_repeat Simple_repeat 1 52 0 2 1673 271 323 44 25 chr6 142646956 142647115 -6869922 - L1MB8 LINE L1 -58 6120 5959 2 1673 570 244 5 141 chr6 142647128 142647319 -6869718 - RSINE1 SINE B4 0 165 1 2 1673 309 232 113 10 chr6 142647355 142647465 -6869572 - L1MB8 LINE L1 -361 5813 5693 2 1673 29 47 0 0 chr6 142648301 142648344 -6868693 + AT_rich Low_complexity Low_complexity 1 43 0 2 1673 270 303 0 0 chr6 142648611 142648687 -6868350 - ID4 SINE ID -7 76 1 2 1673 405 0 0 0 chr6 142648978 142649023 -6868014 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1673 396 0 0 0 chr6 142650289 142650333 -6866704 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2 1673 540 0 0 0 chr6 142651687 142651747 -6865290 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1673 21 0 0 0 chr6 142651817 142651838 -6865199 + AT_rich Low_complexity Low_complexity 1 21 0 2 1673 359 232 5 12 chr6 142651838 142651940 -6865097 - B1F SINE Alu -5 115 13 2 1673 590 280 141 11 chr6 142652555 142652746 -6864291 + B3 SINE B2 1 216 0 2 1673 462 141 61 6 chr6 142653051 142653215 -6863822 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 2 1673 215 202 30 10 chr6 142653239 142653292 -6863745 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 2 1673 201 39 0 0 chr6 142653292 142653318 -6863719 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 1673 567 0 0 0 chr6 142653318 142653380 -6863657 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1673 215 202 30 10 chr6 142653380 142653425 -6863612 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 2 1673 420 200 225 9 chr6 142653889 142654000 -6863037 + B1_Mur2 SINE Alu 2 136 -13 2 1673 684 67 0 0 chr6 142654006 142654096 -6862941 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 2 1673 29 0 0 0 chr6 142654115 142654144 -6862893 + AT_rich Low_complexity Low_complexity 1 29 0 2 1673 322 282 193 11 chr6 142654260 142654436 -6862601 - ID_B1 SINE B4 -16 208 1 2 1673 353 336 0 45 chr6 142655188 142655300 -6861737 - PB1D7 SINE Alu -13 107 1 2 1673 773 226 6 0 chr6 142655384 142655548 -6861489 - B3A SINE B2 -31 167 3 2 1673 244 257 127 14 chr6 142657280 142657351 -6859686 - ID4_ SINE ID 0 83 5 2 1673 281 256 24 24 chr6 142657383 142657467 -6859570 - PB1D10 SINE Alu -31 86 3 2 1673 509 228 37 0 chr6 142657701 142657837 -6859200 + B3A SINE B2 2 142 -56 2 1673 351 266 158 46 chr6 142657864 142658104 -6858933 + Lx8 LINE L1 7207 7473 0 2 1673 938 187 23 6 chr6 142658484 142658661 -6858376 + B3A SINE B2 2 181 -17 2 1673 315 0 0 0 chr6 142658695 142658730 -6858307 + (TAA)n Simple_repeat Simple_repeat 1 35 0 2 1673 213 94 0 0 chr6 142659738 142659770 -6857267 + (CCCCCT)n Simple_repeat Simple_repeat 1 32 0 2 1673 25 0 0 0 chr6 142660017 142660042 -6856995 + AT_rich Low_complexity Low_complexity 1 25 0 2 1673 1320 73 0 0 chr6 142660293 142660470 -6856567 + (TCTCC)n Simple_repeat Simple_repeat 1 177 0 2 1673 180 0 0 0 chr6 142660478 142660498 -6856539 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1673 203 88 0 29 chr6 142660500 142660535 -6856502 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 2 1673 2900 171 63 32 chr6 142660548 142661178 -6855859 - Lx4B LINE L1 -17 7041 6392 2 1673 531 270 69 97 chr6 142661795 142662175 -6854862 - MLT1A LTR MaLR -1 373 10 2 1673 282 143 0 0 chr6 142662538 142662587 -6854450 + (TTAG)n Simple_repeat Simple_repeat 3 51 0 2 1673 310 256 6 13 chr6 142662603 142662693 -6854344 - PB1D10 SINE Alu -34 115 24 2 1673 778 298 49 0 chr6 142663007 142663232 -6853805 - B4A SINE B4 -56 236 1 2 1673 622 246 37 32 chr6 142663396 142663585 -6853452 + B3 SINE B2 4 193 -23 2 1673 180 0 0 0 chr6 142664060 142664080 -6852957 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1673 1518 144 13 41 chr6 142664348 142664721 -6852316 - ORR1A4 LTR MaLR -8 321 1 2 1673 2145 154 56 18 chr6 142664721 142665111 -6851926 + MTB_Mm LTR MaLR 2 406 -1 2 1673 313 154 36 71 chr6 142665111 142665133 -6851904 - ORR1A4 LTR MaLR -354 40 19 2 1673 548 205 0 17 chr6 142665713 142665832 -6851205 + B3 SINE B2 2 118 -98 2 1673 2127 208 38 29 chr6 142665894 142666444 -6850593 + RCHARR1 DNA MER1_type 272 826 -148 2 1673 190 139 28 0 chr6 142666586 142666622 -6850415 + L2a LINE L2 3034 3070 -356 2 1673 306 130 0 0 chr6 142667038 142667084 -6849953 - HAL1-3A_ME LINE L1 -834 2024 1979 2 1673 1071 61 42 9 chr6 142667096 142667438 -6849599 + (TG)n Simple_repeat Simple_repeat 1 353 0 2 1673 843 262 15 0 chr6 142667683 142667889 -6849148 - B3 SINE B2 -7 209 1 2 1673 547 224 43 0 chr6 142667947 142668063 -6848974 + ID_B1 SINE B4 2 122 -102 2 1673 273 234 173 87 chr6 142668434 142668463 -6848574 - B2_Mm2 SINE B2 -5 190 150 2 1673 777 11 0 0 chr6 142668463 142668553 -6848484 + (TG)n Simple_repeat Simple_repeat 1 90 0 2 1673 604 212 93 11 chr6 142668553 142668693 -6848344 - B3A SINE B2 -48 150 6 2 1673 832 281 72 64 chr6 142669483 142669859 -6847178 - MTEa LTR MaLR 0 379 1 2 1673 748 178 16 0 chr6 142670849 142670978 -6846059 - B1_Mur1 SINE Alu -14 135 5 2 1673 182 263 68 34 chr6 142671026 142671085 -6845952 - L3 LINE CR1 -3495 994 934 2 1673 622 175 79 0 chr6 142671223 142671349 -6845688 - MTEa LTR MaLR -47 332 197 2 1673 500 104 7 24 chr6 142671350 142671468 -6845569 + ORR1A3 LTR MaLR 1 146 -248 2 1673 1810 145 7 30 chr6 142671516 142671821 -6845216 + ORR1A4 LTR MaLR 29 326 -3 2 1673 593 297 6 25 chr6 142671884 142672043 -6844994 - MTEa LTR MaLR -221 158 3 2 1673 1215 254 35 0 chr6 142672267 142672554 -6844483 - MTD LTR MaLR -113 306 10 2 1673 636 225 42 28 chr6 142672902 142673044 -6843993 + ID_B1 SINE B4 81 224 0 2 1673 2356 190 106 2 chr6 142673068 142673160 -6843877 - RLTR20B3 LTR ERVK 0 577 485 2 1673 294 50 0 0 chr6 142673160 142673200 -6843837 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1673 2356 190 106 2 chr6 142673200 142673628 -6843409 - RLTR20B3 LTR ERVK -93 484 5 2 1673 264 265 53 120 chr6 142673999 142674132 -6842905 - MLT1J LTR MaLR -231 281 158 2 1673 240 286 45 60 chr6 142674886 142675020 -6842017 - RMER2 LTR ERV1 0 567 436 2 1673 2574 62 111 14 chr6 142675650 142676011 -6841026 + MTA_Mm LTR MaLR 1 396 0 2 1673 238 349 87 27 chr6 142676042 142676192 -6840845 + MLT1L LTR MaLR 339 497 -113 2 1673 410 205 0 0 chr6 142676256 142676334 -6840703 - B3A SINE B2 -119 79 2 2 1673 201 74 0 0 chr6 142676548 142676575 -6840462 + (TTTTTG)n Simple_repeat Simple_repeat 5 31 0 2 1673 2895 200 28 31 chr6 142676985 142677559 -6839478 - Lx5 LINE L1 0 7050 6479 2 1673 1303 150 4 33 chr6 142677558 142677800 -6839237 - Lx5 LINE L1 -1174 5876 5642 2 1673 255 283 0 0 chr6 142678034 142678080 -6838957 + B1F SINE Alu 75 120 -29 2 1673 1250 70 0 9 chr6 142678097 142678313 -6838724 + (GAAA)n Simple_repeat Simple_repeat 1 213 0 2 1673 479 325 6 43 chr6 142679810 142679971 -6837066 - RSINE1 SINE B4 0 165 11 3 1673 856 196 65 10 chr6 142680123 142680324 -6836713 + B3 SINE B2 5 216 0 3 1673 274 160 20 20 chr6 142680417 142680468 -6836569 + ID SINE ID 6 56 -168 3 1673 215 218 149 75 chr6 142680468 142680510 -6836527 + BC1_Mm scRNA scRNA 6 105 -47 3 1673 1281 142 8 22 chr6 142680760 142680989 -6836048 + RLTR19 LTR ERVK 1 235 -261 3 1673 721 93 0 0 chr6 142681048 142681145 -6835892 + RLTR19 LTR ERVK 170 266 -233 3 1673 475 213 174 9 chr6 142681954 142682063 -6834974 + RSINE1 SINE B4 13 139 -26 3 1673 309 51 0 0 chr6 142682068 142682107 -6834930 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1673 495 0 0 0 chr6 142682107 142682162 -6834875 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 3 1673 451 334 179 7 chr6 142682533 142682834 -6834203 - L2 LINE L2 -567 2852 2500 3 1673 202 377 26 0 chr6 142682849 142682963 -6834074 - L2 LINE L2 -995 2424 2308 3 1673 191 316 112 45 chr6 142683101 142683280 -6833757 - L2 LINE L2 -1109 2310 2120 3 1673 371 280 30 10 chr6 142683396 142683497 -6833540 + ID_B1 SINE B4 84 186 -38 3 1673 347 268 25 82 chr6 142683497 142683517 -6833520 + PB1D10 SINE Alu 3 116 -1 3 1673 309 347 0 18 chr6 142683517 142683649 -6833388 + ID2 SINE ID 3 129 -23 3 1673 1274 237 102 38 chr6 142684151 142684523 -6832514 - MTD LTR MaLR -2 417 22 3 1673 251 114 0 22 chr6 142684674 142684719 -6832318 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1673 650 234 4 0 chr6 142684935 142685193 -6831844 + (TG)n Simple_repeat Simple_repeat 1 259 0 3 1673 559 229 68 141 chr6 142685286 142685520 -6831517 + ID_B1 SINE B4 1 217 -7 3 1673 265 328 77 49 chr6 142685755 142685938 -6831099 - MER63D DNA AcHobo -860 201 14 3 1673 209 176 0 0 chr6 142685968 142686002 -6831035 + CT-rich Low_complexity Low_complexity 3 36 0 3 1673 186 283 49 16 chr6 142686232 142686293 -6830744 - MIRb SINE MIR -159 109 47 3 1673 861 241 27 0 chr6 142686375 142686562 -6830475 + B3A SINE B2 1 192 -6 3 1673 1175 338 100 13 chr6 142686625 142686763 -6830274 + ERVL-B4-int LTR ERVL 1566 1706 -4008 3 1673 450 0 0 0 chr6 142686763 142686813 -6830224 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1673 1175 338 100 13 chr6 142686813 142687382 -6829655 + ERVL-B4-int LTR ERVL 1707 2334 -3380 3 1673 1086 181 39 22 chr6 142687383 142687614 -6829423 + RLTR28 LTR ERVL 3 237 -287 3 1673 668 315 201 18 chr6 142687630 142688027 -6829010 + ERVL-E-int LTR ERVL 4788 5257 -410 3 1673 3803 154 118 77 chr6 142688601 142689457 -6827580 + RMER19B LTR ERVK 1 891 -11 3 1673 253 282 42 0 chr6 142689500 142689571 -6827466 - ID4_ SINE ID -4 79 6 3 1673 36 40 0 0 chr6 142689753 142689803 -6827234 + AT_rich Low_complexity Low_complexity 1 50 0 3 1673 255 301 7 68 chr6 142690333 142690479 -6826558 - L1M3 LINE L1 -3412 2728 2592 3 1673 281 317 56 46 chr6 142690733 142690928 -6826109 - L1M3 LINE L1 -3741 2399 2203 3 1673 393 183 170 19 chr6 142690950 142691056 -6825981 - B1_Mur1 SINE Alu -24 125 4 3 1673 224 318 0 15 chr6 142691008 142691075 -6825962 - B4 SINE B4 -157 135 70 3 1673 393 314 23 39 chr6 142691303 142691432 -6825605 - B1F SINE Alu -20 129 3 3 1673 317 267 181 31 chr6 142691433 142691626 -6825411 + L1MB1 LINE L1 5049 5270 -873 3 1673 753 304 67 71 chr6 142691777 142692326 -6824711 + RMER13A LTR ERVK 14 560 -300 3 1673 348 247 12 12 chr6 142692575 142692657 -6824380 + ID2 SINE ID 1 82 -1 3 1673 543 291 10 39 chr6 142692664 142692868 -6824169 + L1MB1 LINE L1 5606 5803 -386 3 1673 820 205 6 6 chr6 142692890 142693052 -6823985 + B3A SINE B2 1 162 -36 3 1673 414 0 0 0 chr6 142693062 142693108 -6823929 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1673 586 274 104 9 chr6 142693111 142693428 -6823609 + L1MB1 LINE L1 5818 6164 -25 3 1673 566 202 4 0 chr6 142693439 142693696 -6823341 + (CA)n Simple_repeat Simple_repeat 1 258 0 3 1673 692 181 6 0 chr6 142693738 142694078 -6822959 + (CA)n Simple_repeat Simple_repeat 1 342 0 3 1673 382 278 40 40 chr6 142694090 142694231 -6822806 + L1MA10 LINE L1 6185 6326 -8 3 1673 1078 82 7 26 chr6 142694231 142694382 -6822655 + B1_Mus1 SINE Alu 1 148 0 3 1673 234 245 50 30 chr6 142694735 142694836 -6822201 + L1M3 LINE L1 5782 5884 -284 3 1673 230 324 39 10 chr6 142695626 142695729 -6821308 + Lx8 LINE L1 5791 5896 -1577 3 1673 204 184 0 0 chr6 142695771 142695820 -6821217 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1673 840 268 38 19 chr6 142696130 142696339 -6820698 + B3 SINE B2 4 216 0 3 1673 343 284 32 86 chr6 142696726 142696946 -6820091 + L1M7 LINE L1 58 265 -5953 3 1673 216 0 0 0 chr6 142696962 142696986 -6820051 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 3 1673 798 293 62 5 chr6 142697084 142697293 -6819744 - ID_B1 SINE B4 -3 221 1 3 1673 678 252 12 42 chr6 142697342 142697508 -6819529 + B3A SINE B2 4 164 -34 3 1673 440 361 33 47 chr6 142697741 142697956 -6819081 + B4A SINE B4 68 279 -13 3 1673 597 139 0 0 chr6 142697968 142698076 -6818961 + (CATA)n Simple_repeat Simple_repeat 4 111 0 3 1673 479 263 9 17 chr6 142698531 142698647 -6818390 - ID_B1 SINE B4 -8 216 102 3 1673 307 258 71 65 chr6 142698709 142698879 -6818158 + L1M4 LINE L1 3370 3540 -2606 3 1673 377 266 0 38 chr6 142698888 142699753 -6817284 + (CA)n Simple_repeat Simple_repeat 1 832 0 3 1673 1747 222 58 32 chr6 142699851 142700284 -6816753 + RLTR41 LTR ERV1 3 446 0 3 1673 1265 184 9 0 chr6 142700303 142700526 -6816511 - URR1B DNA MER1_type 0 225 1 3 1673 980 212 96 26 chr6 142700705 142700897 -6816140 - B4A SINE B4 0 292 85 3 1673 243 0 0 0 chr6 142700897 142700924 -6816113 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 1673 980 212 96 26 chr6 142700924 142701002 -6816035 - B4A SINE B4 -208 84 4 3 1673 251 252 78 39 chr6 142701048 142701151 -6815886 - MLT1D LTR MaLR -97 408 302 3 1673 24 0 0 0 chr6 142701351 142701375 -6815662 + AT_rich Low_complexity Low_complexity 1 24 0 3 1673 1470 190 76 92 chr6 142701454 142701889 -6815148 + RMER10A LTR ERVL 1 428 -14 3 1673 987 202 17 57 chr6 142702052 142702594 -6814443 + RMER17C LTR ERVK 1 410 0 3 1673 366 272 163 57 chr6 142702885 142703112 -6813925 - MIRb SINE MIR -18 250 8 3 1673 383 230 43 54 chr6 142704292 142704384 -6812653 + B1F SINE Alu 37 127 -22 3 1673 1107 84 0 0 chr6 142704577 142704779 -6812258 + (TC)n Simple_repeat Simple_repeat 1 202 0 3 1673 246 352 0 19 chr6 142704923 142705030 -6812007 + GA-rich Low_complexity Low_complexity 1 105 0 3 1673 23 68 0 0 chr6 142705323 142705367 -6811670 + GC_rich Low_complexity Low_complexity 1 44 0 3 1673 21 0 0 0 chr6 142705380 142705401 -6811636 + GC_rich Low_complexity Low_complexity 1 21 0 3 1673 183 330 133 10 chr6 142706295 142706393 -6810644 - MIRm SINE MIR -3 273 164 3 1673 684 291 6 6 chr6 142706622 142706802 -6810235 + B3A SINE B2 5 184 -14 3 1673 662 287 112 20 chr6 142706832 142707111 -6809926 + B4 SINE B4 7 281 -11 3 1673 423 290 7 88 chr6 142708822 142708958 -6808079 + RSINE1 SINE B4 6 130 -35 3 1673 463 322 60 0 chr6 142709688 142709837 -6807200 - MER58B DNA MER1_type -7 334 177 3 1673 423 0 0 0 chr6 142711459 142711506 -6805531 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1673 270 0 0 0 chr6 142711506 142711535 -6805502 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1673 567 293 130 37 chr6 142711542 142711758 -6805279 - B4A SINE B4 -55 237 2 3 1673 223 120 19 57 chr6 142712507 142712560 -6804477 + T-rich Low_complexity Low_complexity 3 53 0 3 1673 471 336 52 43 chr6 142713985 142714215 -6802822 + B4A SINE B4 60 291 -1 3 1673 361 312 150 31 chr6 142714616 142715016 -6802021 - L1MEb LINE L1 -5029 1147 650 3 1673 832 258 11 27 chr6 142715647 142715834 -6801203 + ID_B1 SINE B4 41 224 0 3 1673 710 277 31 23 chr6 142717022 142717230 -6799807 + B3 SINE B2 2 209 -7 3 1673 333 0 0 0 chr6 142717788 142717825 -6799212 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1673 273 57 0 0 chr6 142717825 142717859 -6799178 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1673 1273 229 29 64 chr6 142717970 142718315 -6798722 - Lx6 LINE L1 -30 7430 7098 3 1673 1070 65 170 0 chr6 142718329 142718482 -6798555 + L1_Mus2 LINE L1 6387 6565 -1 3 1673 280 340 13 77 chr6 142720912 142721068 -6795969 + RSINE1 SINE B4 3 148 -17 3 1673 432 0 0 0 chr6 142722034 142722082 -6794955 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1673 849 201 69 0 chr6 142722172 142722361 -6794676 + B3 SINE B2 2 203 -13 3 1673 260 219 109 0 chr6 142722396 142722460 -6794577 + PB1D10 SINE Alu 2 72 -45 3 1673 476 209 109 63 chr6 142727232 142727406 -6789631 + B3A SINE B2 1 182 -16 3 1673 22 0 0 0 chr6 142727430 142727452 -6789585 + AT_rich Low_complexity Low_complexity 1 22 0 3 1673 379 284 108 0 chr6 142727931 142728079 -6788958 - MIR SINE MIR -55 207 44 3 1673 937 284 34 38 chr6 142730300 142730593 -6786444 + B4A SINE B4 1 292 0 3 1673 405 239 13 107 chr6 142730677 142730836 -6786201 - B1F SINE Alu -5 144 1 3 1673 1576 200 25 6 chr6 142731574 142731896 -6785141 - MTD LTR MaLR -90 329 2 3 1673 1525 142 201 42 chr6 142731906 142732104 -6784933 - RMER17C LTR ERVK 0 410 182 3 1673 482 0 0 17 chr6 142732104 142732163 -6784874 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1673 1525 142 201 42 chr6 142732163 142732318 -6784719 - RMER17C LTR ERVK -229 181 2 3 1673 1321 147 27 18 chr6 142732509 142732731 -6784306 - URR1B DNA MER1_type 0 225 2 3 1673 2836 113 5 11 chr6 142732738 142733175 -6783862 + Lx2A LINE L1 6560 6993 -15 3 1673 198 0 0 0 chr6 142733175 142733197 -6783840 + (TAA)n Simple_repeat Simple_repeat 1 22 0 3 1673 25 0 0 0 chr6 142735117 142735142 -6781895 + AT_rich Low_complexity Low_complexity 1 25 0 3 1673 1147 48 14 7 chr6 142735639 142735785 -6781252 + B1_Mus2 SINE Alu 1 147 0 3 1673 487 260 130 0 chr6 142735978 142736101 -6780936 - B1_Mur1 SINE Alu -8 141 3 4 1673 186 43 0 0 chr6 142736197 142736220 -6780817 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1673 822 21 0 0 chr6 142736457 142736553 -6780484 + (TC)n Simple_repeat Simple_repeat 1 96 0 4 1673 344 235 0 7 chr6 142737030 142737167 -6779870 + G-rich Low_complexity Low_complexity 4 139 0 4 1674 180 320 71 20 chr6 142737544 142737643 -6779394 + L2c LINE L2 3281 3384 -3 4 1674 555 235 262 12 chr6 142737924 142738092 -6778945 + B3 SINE B2 1 210 -6 4 1674 522 319 88 91 chr6 142738220 142738561 -6778476 - MER2 DNA MER2_type -2 343 4 4 1674 682 228 21 0 chr6 142738924 142739069 -6777968 - B1_Mur1 SINE Alu 0 149 2 4 1674 183 42 0 0 chr6 142739602 142739626 -6777411 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1674 1165 28 0 0 chr6 142739642 142739783 -6777254 - B1_Mm SINE Alu 0 147 7 4 1674 895 35 9 0 chr6 142739781 142739894 -6777143 + B1_Mus2 SINE Alu 34 147 0 4 1674 566 239 0 18 chr6 142739925 142740036 -6777001 - B1F SINE Alu -40 109 1 4 1674 258 331 0 140 chr6 142740763 142740963 -6776074 - RMER12 LTR ERVK -464 858 687 4 1674 502 288 16 23 chr6 142743296 142743424 -6773613 - ID_B1 SINE B4 -2 222 96 4 1674 519 348 21 21 chr6 142744153 142744344 -6772693 + MIRb SINE MIR 61 251 -17 4 1674 186 150 0 0 chr6 142744588 142744628 -6772409 + (G)n Simple_repeat Simple_repeat 1 40 0 4 1674 180 148 194 16 chr6 142744962 142745024 -6772013 - L2 LINE L2 -810 2609 2537 4 1674 688 136 0 19 chr6 142745212 142745317 -6771720 + B1_Mus1 SINE Alu 35 137 -11 4 1674 180 0 0 0 chr6 142745381 142745401 -6771636 + (CAAGG)n Simple_repeat Simple_repeat 2 21 0 4 1674 311 42 42 0 chr6 142745627 142745675 -6771362 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 4 1674 27 49 0 0 chr6 142745699 142745740 -6771297 + AT_rich Low_complexity Low_complexity 1 41 0 4 1674 481 248 117 39 chr6 142745988 142746244 -6770793 + B4A SINE B4 2 277 -15 4 1674 504 0 0 0 chr6 142746255 142746311 -6770726 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1674 214 179 26 0 chr6 142746597 142746636 -6770401 + CT-rich Low_complexity Low_complexity 1 40 0 4 1674 303 355 7 14 chr6 142746690 142746830 -6770207 - MER5A1 DNA MER1_type -18 148 10 4 1674 789 217 26 7 chr6 142747972 142748125 -6768912 + B3A SINE B2 1 156 -42 4 1674 234 62 0 0 chr6 142748131 142748163 -6768874 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1674 277 267 127 45 chr6 142748281 142748391 -6768646 + B3 SINE B2 89 207 -9 4 1674 441 0 0 0 chr6 142748923 142748972 -6768065 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 4 1674 21 36 0 0 chr6 142749787 142749815 -6767222 + AT_rich Low_complexity Low_complexity 1 28 0 4 1674 740 233 48 29 chr6 142749873 142750081 -6766956 + B3 SINE B2 5 216 0 4 1674 233 224 29 29 chr6 142750777 142750846 -6766191 - LTR85a LTR Gypsy? -246 456 388 4 1674 280 290 15 61 chr6 142751098 142751230 -6765807 - RSINE1 SINE B4 -37 128 3 4 1674 406 215 80 53 chr6 142751633 142751746 -6765291 - B3 SINE B2 0 216 101 4 1674 414 0 0 0 chr6 142751753 142751799 -6765238 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1674 531 271 43 7 chr6 142753918 142754059 -6762978 + ID_B1 SINE B4 16 161 -63 4 1674 3566 274 58 85 chr6 142754137 142755809 -6761228 - Lx9 LINE L1 -3 7641 5834 4 1674 455 197 0 0 chr6 142755825 142755896 -6761141 + ID_B1 SINE B4 154 224 0 4 1674 23 33 0 0 chr6 142755929 142755959 -6761078 + AT_rich Low_complexity Low_complexity 1 30 0 4 1674 381 288 238 6 chr6 142756322 142756637 -6760400 + L1M5 LINE L1 4792 5179 -967 4 1674 295 302 68 42 chr6 142756891 142757081 -6759956 + L1M4b LINE L1 91 285 -7049 4 1674 21 57 0 0 chr6 142757663 142757698 -6759339 + AT_rich Low_complexity Low_complexity 1 35 0 4 1674 1140 98 0 0 chr6 142757780 142757944 -6759093 + (GAAAA)n Simple_repeat Simple_repeat 2 165 0 4 1674 623 144 29 0 chr6 142758241 142758380 -6758657 + GA-rich Low_complexity Low_complexity 1 143 0 4 1674 586 274 87 31 chr6 142758422 142758618 -6758419 + B3 SINE B2 9 215 -1 4 1674 8264 143 54 19 chr6 142759370 142759405 -6757632 - Lx5 LINE L1 -1 7049 6994 4 1674 285 29 0 0 chr6 142759405 142759439 -6757598 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 4 1674 8264 143 54 19 chr6 142759439 142760787 -6756250 - Lx5 LINE L1 -57 6993 5619 4 1674 621 263 58 0 chr6 142761073 142761229 -6755808 + ID_B1 SINE B4 57 221 -3 4 1674 238 258 0 0 chr6 142761897 142761959 -6755078 + L1MA10 LINE L1 6269 6330 -4 4 1674 642 49 0 0 chr6 142761988 142762070 -6754967 + (GGGA)n Simple_repeat Simple_repeat 3 84 0 4 1674 382 262 48 0 chr6 142762257 142762360 -6754677 - PB1D10 SINE Alu -1 116 9 4 1674 23 0 0 0 chr6 142762985 142763008 -6754029 + AT_rich Low_complexity Low_complexity 1 23 0 4 1674 255 325 38 0 chr6 142763017 142763097 -6753940 - B1_Mur3 SINE Alu -65 84 2 4 1674 278 379 104 93 chr6 142763592 142764278 -6752759 + Kanga1 DNA Tc2 5 684 -1061 4 1674 700 257 67 42 chr6 142764278 142764562 -6752475 - B4 SINE B4 0 292 2 4 1674 278 379 104 93 chr6 142764562 142764596 -6752441 + Kanga1 DNA Tc2 685 722 -1023 4 1674 468 0 0 0 chr6 142764596 142764648 -6752389 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1674 278 379 104 93 chr6 142764648 142764869 -6752168 + Kanga1 DNA Tc2 723 957 -788 4 1674 418 286 114 22 chr6 142765423 142765694 -6751343 + Lx7 LINE L1 5254 5549 -331 4 1674 250 196 0 0 chr6 142765792 142765838 -6751199 + Lx7 LINE L1 5697 5742 -1954 4 1674 264 59 0 0 chr6 142766117 142766151 -6750886 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 4 1674 703 186 208 6 chr6 142766151 142766329 -6750708 + ID_B1 SINE B4 3 216 -8 4 1674 967 304 65 40 chr6 142766807 142767606 -6749431 + RMER1C Other Other 336 860 -482 4 1674 777 154 77 67 chr6 142768149 142768344 -6748693 + B3A SINE B2 2 198 0 4 1674 852 218 52 0 chr6 142769358 142769532 -6747505 + B3 SINE B2 5 187 -29 4 1674 500 184 0 0 chr6 142769569 142769645 -6747392 - RSINE1 SINE B4 -88 77 2 4 1674 442 299 51 13 chr6 142769745 142769901 -6747136 - RSINE1 SINE B4 -1 164 3 4 1674 531 0 0 0 chr6 142770339 142770398 -6746639 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 4 1674 1073 128 0 6 chr6 142770403 142770584 -6746453 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1674 200 167 0 0 chr6 142771497 142771527 -6745510 + G-rich Low_complexity Low_complexity 5 34 0 4 1674 432 55 0 0 chr6 142771531 142771586 -6745451 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1674 201 319 41 14 chr6 142772105 142772178 -6744859 - L4 LINE RTE -933 1096 1022 4 1674 369 0 0 0 chr6 142772541 142772582 -6744455 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1674 237 65 0 0 chr6 142773750 142773781 -6743256 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 4 1674 395 338 28 0 chr6 142773781 142773916 -6743121 - B3A SINE B2 -20 178 40 4 1674 531 90 0 0 chr6 142774622 142774700 -6742337 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 1674 183 244 44 0 chr6 142775751 142775796 -6741241 + MIRm SINE MIR 197 243 -33 4 1674 210 222 0 0 chr6 142776282 142776336 -6740701 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 4 1674 262 309 154 120 chr6 142778419 142778743 -6738294 + RMER20B LTR ERVK 234 568 -59 4 1674 271 336 114 55 chr6 142779267 142779522 -6737515 - B4 SINE B4 -18 274 5 4 1674 434 254 11 17 chr6 142780136 142780312 -6736725 + GA-rich Low_complexity Low_complexity 6 180 0 4 1674 1006 124 220 5 chr6 142780695 142780881 -6736156 - URR1A DNA MER1_type 0 226 1 4 1674 717 299 119 27 chr6 142781205 142781542 -6735495 + MTEb LTR MaLR 1 368 -11 4 1674 410 289 33 5 chr6 142782333 142782453 -6734584 + B1F SINE Alu 9 127 -20 4 1674 612 204 22 22 chr6 142782835 142782970 -6734067 + B1F SINE Alu 15 149 0 4 1674 455 222 22 0 chr6 142784957 142785190 -6731847 + (TATG)n Simple_repeat Simple_repeat 1 238 0 4 1674 229 188 14 28 chr6 142785234 142785305 -6731732 + (TATG)n Simple_repeat Simple_repeat 2 71 0 4 1674 33 25 0 0 chr6 142785660 142785700 -6731337 + AT_rich Low_complexity Low_complexity 1 40 0 4 1674 400 210 0 47 chr6 142786308 142786393 -6730644 + B1_Mur3 SINE Alu 5 85 -64 4 1674 860 319 21 17 chr6 142786481 142786768 -6730269 + B4A SINE B4 5 292 0 4 1674 2803 52 6 0 chr6 142787135 142787478 -6729559 + ORR1A1 LTR MaLR 2 346 0 4 1674 23 54 0 0 chr6 142787669 142787706 -6729331 + AT_rich Low_complexity Low_complexity 1 37 0 4 1674 12838 148 170 13 chr6 142787706 142793042 -6723995 - Lx LINE L1 -1 6653 365 4 1674 714 305 39 27 chr6 142793043 142793380 -6723657 + RMER5 LTR ERV1 189 529 -5 4 1674 953 236 19 9 chr6 142794758 142794968 -6722069 - B3 SINE B2 -1 215 4 4 1674 585 0 0 0 chr6 142795021 142795086 -6721951 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1674 504 304 6 70 chr6 142795106 142795262 -6721775 - B3A SINE B2 -51 147 2 4 1674 450 53 0 0 chr6 142795769 142795826 -6721211 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1674 836 250 24 9 chr6 142795843 142796053 -6720984 + B3 SINE B2 2 214 -2 4 1674 635 295 12 0 chr6 142796511 142796677 -6720360 + ORR1E LTR MaLR 1 168 -191 4 1674 306 0 0 0 chr6 142797703 142797737 -6719300 + (GA)n Simple_repeat Simple_repeat 1 34 0 4 1674 207 0 0 0 chr6 142797776 142797799 -6719238 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1674 393 138 0 0 chr6 142798312 142798392 -6718645 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1674 427 271 9 0 chr6 142798577 142798684 -6718353 - MTEa LTR MaLR -2 377 270 4 1674 703 178 0 27 chr6 142799386 142799571 -6717466 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1674 216 0 0 0 chr6 142799651 142799675 -6717362 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1674 770 257 81 54 chr6 142799793 142800182 -6716855 - MTEb LTR MaLR -2 377 1 5 1674 2527 57 31 0 chr6 142800250 142800567 -6716470 - ORR1A2 LTR MaLR 0 327 1 5 1674 430 301 123 34 chr6 142800919 142801279 -6715758 + ORR1E LTR MaLR 1 370 0 5 1674 180 179 0 0 chr6 142801345 142801384 -6715653 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1674 182 83 0 53 chr6 142801895 142801933 -6715104 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1674 241 250 165 38 chr6 142803310 142803468 -6713569 + MLT1C LTR MaLR 59 236 -231 5 1674 306 227 29 29 chr6 142803691 142803759 -6713278 - RSINE1 SINE B4 0 165 98 5 1674 1009 108 93 33 chr6 142803801 142803983 -6713054 + B2_Mm2 SINE B2 1 193 -2 5 1674 202 222 0 0 chr6 142804127 142804163 -6712874 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 5 1674 197 132 26 0 chr6 142804163 142804201 -6712836 + CT-rich Low_complexity Low_complexity 1 39 0 5 1674 288 0 0 0 chr6 142804256 142804288 -6712749 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1674 871 234 52 5 chr6 142805003 142805225 -6711812 + Lx8 LINE L1 6984 7239 -234 5 1674 295 259 24 12 chr6 142805819 142805901 -6711136 - Ricksha_c DNA MuDR -1612 436 354 5 1674 189 107 0 0 chr6 142805918 142805946 -6711091 + (GA)n Simple_repeat Simple_repeat 2 29 0 5 1674 461 290 75 29 chr6 142807543 142807717 -6709320 + B3A SINE B2 1 182 -16 5 1674 213 135 0 26 chr6 142807893 142807931 -6709106 + A-rich Low_complexity Low_complexity 3 39 0 5 1674 1638 192 52 112 chr6 142809349 142809813 -6707224 + RLTR41 LTR ERV1 11 446 0 5 1674 399 242 0 10 chr6 142809987 142810037 -6707000 + RLTR41 LTR ERV1 1 50 -396 5 1674 180 97 0 0 chr6 142810037 142810068 -6706969 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1674 399 242 0 10 chr6 142810068 142810113 -6706924 + RLTR41 LTR ERV1 51 95 -351 5 1674 1060 246 123 12 chr6 142810793 142811126 -6705911 - ORR1D2 LTR MaLR 0 370 1 5 1674 556 286 62 66 chr6 142811189 142811447 -6705590 + ORR1E LTR MaLR 3 259 -100 5 1674 328 314 16 55 chr6 142811551 142811679 -6705358 + ORR1E LTR MaLR 251 373 -6 5 1674 321 161 48 0 chr6 142812102 142812164 -6704873 - L1MEd LINE L1 -5082 1037 973 5 1674 267 54 0 0 chr6 142812253 142812290 -6704747 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1674 252 0 0 0 chr6 142812370 142812398 -6704639 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1674 5663 71 1 1 chr6 142812734 142813456 -6703581 - L1_Mus1 LINE L1 0 6567 5846 5 1674 412 250 0 0 chr6 142813758 142813834 -6703203 - ID4_ SINE ID -7 76 1 5 1674 754 268 71 37 chr6 142814215 142814483 -6702554 + B4A SINE B4 8 284 -8 5 1674 3298 186 35 41 chr6 142815202 142815857 -6701180 + Lx5 LINE L1 6398 7048 -2 5 1674 960 157 0 0 chr6 142816699 142817060 -6699977 + (TG)n Simple_repeat Simple_repeat 1 361 0 5 1674 476 293 16 0 chr6 142817148 142817271 -6699766 + ID_B1 SINE B4 88 212 -12 5 1674 459 52 0 0 chr6 142817271 142817329 -6699708 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 5 1674 553 291 55 15 chr6 142817333 142817532 -6699505 + B3 SINE B2 4 210 -6 5 1674 992 289 15 0 chr6 142817904 142818174 -6698863 - B4A SINE B4 -18 274 1 5 1674 180 0 0 0 chr6 142818474 142818494 -6698543 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 1674 2494 167 45 22 chr6 142819288 142819796 -6697241 + RLTR11A2 LTR ERVK 8 527 0 5 1674 1196 107 11 6 chr6 142820358 142820536 -6696501 + B2_Mm1t SINE B2 1 179 -14 5 1674 296 130 300 58 chr6 142820587 142820707 -6696330 + B2_Mm2 SINE B2 47 195 0 5 1674 207 0 0 0 chr6 142820739 142820762 -6696275 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1674 288 0 0 0 chr6 142820762 142820793 -6696244 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 1674 413 191 511 0 chr6 142820947 142821088 -6695949 - ID_B1 SINE B4 -11 213 1 5 1674 318 192 32 14 chr6 142822022 142822240 -6694797 + (CA)n Simple_repeat Simple_repeat 1 222 0 5 1674 591 203 3 9 chr6 142823327 142823653 -6693384 + (TG)n Simple_repeat Simple_repeat 1 323 0 5 1674 514 212 6 11 chr6 142823677 142823858 -6693179 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1674 788 288 58 5 chr6 142823858 142824081 -6692956 - B4A SINE B4 0 292 58 5 1674 610 327 66 35 chr6 142825959 142826216 -6690821 + B4A SINE B4 2 266 -26 5 1674 312 27 0 0 chr6 142826216 142826253 -6690784 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1674 185 194 0 0 chr6 142827514 142827550 -6689487 - L2a LINE L2 -378 3048 3013 5 1674 184 280 88 0 chr6 142828210 142828335 -6688702 - L2a LINE L2 -1295 2124 1989 5 1674 591 265 26 21 chr6 142828628 142828817 -6688220 - ORR1D2 LTR MaLR -171 199 10 5 1674 384 289 12 54 chr6 142829366 142829534 -6687503 - RSINE1 SINE B4 -4 161 1 5 1674 508 207 24 47 chr6 142829907 142830034 -6687003 - MTC LTR MaLR 0 421 298 5 1674 472 200 108 0 chr6 142830130 142830250 -6686787 - B1F SINE Alu 0 149 17 5 1674 247 49 24 24 chr6 142830381 142830423 -6686614 + (TCC)n Simple_repeat Simple_repeat 3 44 0 5 1674 666 222 3 0 chr6 142831917 142832276 -6684761 + (TG)n Simple_repeat Simple_repeat 1 360 0 5 1674 210 357 6 83 chr6 142832276 142832444 -6684593 - B3 SINE B2 -13 203 49 5 1674 471 267 39 8 chr6 142832308 142832464 -6684573 - B4 SINE B4 -104 188 29 5 1674 664 132 0 0 chr6 142833086 142833200 -6683837 + URR1B DNA MER1_type 110 223 -2 5 1674 396 0 0 0 chr6 142833503 142833547 -6683490 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1674 360 0 0 0 chr6 142833548 142833588 -6683449 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1674 318 0 97 0 chr6 142833858 142833920 -6683117 + (TTG)n Simple_repeat Simple_repeat 2 69 0 5 1674 1070 236 73 19 chr6 142835050 142835418 -6681619 + MTD LTR MaLR 5 405 -14 5 1674 449 95 40 0 chr6 142835939 142836013 -6681024 + (TCTCCC)n Simple_repeat Simple_repeat 5 81 0 5 1674 562 304 84 18 chr6 142836046 142836321 -6680716 + MTEa LTR MaLR 86 378 -1 5 1674 488 332 53 29 chr6 142836390 142836598 -6680439 + B4A SINE B4 37 249 -43 5 1674 239 233 0 91 chr6 142837346 142837412 -6679625 + PB1D10 SINE Alu 10 69 -48 5 1674 452 246 24 8 chr6 142838633 142838756 -6678281 + B1F SINE Alu 25 149 0 5 1674 783 224 40 17 chr6 142839667 142839844 -6677193 + B3A SINE B2 2 182 -16 5 1674 224 149 0 21 chr6 142839863 142839911 -6677126 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 5 1674 183 80 0 0 chr6 142840096 142840121 -6676916 + (CACCC)n Simple_repeat Simple_repeat 2 26 0 5 1674 443 279 100 84 chr6 142841219 142841540 -6675497 + ORR1E LTR MaLR 26 351 -8 5 1674 225 94 0 0 chr6 142841950 142841982 -6675055 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 5 1674 1375 94 10 10 chr6 142842526 142842720 -6674317 + B2_Mm2 SINE B2 1 194 -1 5 1674 330 188 120 40 chr6 142842867 142842967 -6674070 + MLT1A1 LTR MaLR 4 111 -297 5 1674 252 208 11 0 chr6 142843467 142843528 -6673509 + MLT1J LTR MaLR 61 165 -347 5 1674 772 287 94 19 chr6 142844556 142844602 -6672435 - B4 SINE B4 -8 284 231 5 1674 3253 51 2 8 chr6 142844602 142845000 -6672037 - MTA_Mm LTR MaLR 0 396 1 5 1674 772 287 94 19 chr6 142845000 142845209 -6671828 - B4 SINE B4 -62 230 11 5 1674 1170 75 4 19 chr6 142845232 142845500 -6671537 + (CA)n Simple_repeat Simple_repeat 1 263 0 5 1674 36109 45 0 3 chr6 142845585 142850844 -6666193 + L1Md_T LINE L1 250 5589 -297 5 1674 8600 33 0 0 chr6 142850844 142851896 -6665141 + L1Md_T LINE L1 5590 6585 0 5 1674 270 329 29 81 chr6 142851896 142852068 -6664969 - MLT2B5 LTR ERVL -367 234 72 5 1674 334 243 6 182 chr6 142851923 142852104 -6664933 - MTEa LTR MaLR -199 180 32 5 1674 29653 23 0 1 chr6 142852214 142855621 -6661416 + L1_Mm LINE L1 2180 5586 -297 5 1674 8182 56 0 0 chr6 142855621 142856617 -6660420 + L1Md_T LINE L1 5587 6582 0 5 1674 29653 23 0 1 chr6 142856617 142856634 -6660403 + L1_Mm LINE L1 5587 5600 -283 5 1674 253 239 0 66 chr6 142858322 142858398 -6658639 - PB1 SINE Alu -3 124 54 5 1674 4125 161 103 61 chr6 142858400 142859344 -6657693 + RLTR13C1 LTR ERVK 1 983 0 5 1674 350 159 0 0 chr6 142859452 142859515 -6657522 - B1F1 SINE Alu -86 63 1 5 1674 214 375 30 23 chr6 142860012 142860143 -6656894 - MIRc SINE MIR -71 197 66 5 1674 826 287 32 68 chr6 142860364 142860644 -6656393 - B4A SINE B4 -20 272 3 5 1674 603 250 117 0 chr6 142860667 142860855 -6656182 - B3 SINE B2 -6 210 1 5 1674 539 201 0 3 chr6 142861086 142861398 -6655639 + (CA)n Simple_repeat Simple_repeat 1 310 0 5 1674 654 305 110 11 chr6 142861414 142861691 -6655346 - L1MA4 LINE L1 -378 5922 5634 5 1674 222 292 133 11 chr6 142863774 142863864 -6653173 - PB1D10 SINE Alu -16 101 1 5 1674 201 94 0 0 chr6 142864584 142864616 -6652421 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 5 1674 315 190 58 0 chr6 142865037 142865115 -6651922 + PB1D10 SINE Alu 14 96 -21 5 1674 302 169 0 24 chr6 142865397 142865482 -6651555 + (CAGA)n Simple_repeat Simple_repeat 4 86 0 5 1674 507 344 115 8 chr6 142866035 142866540 -6650497 + L1MA5 LINE L1 5387 5941 -356 5 1674 1188 57 0 0 chr6 142866665 142866806 -6650231 + B1_Mm SINE Alu 1 141 -6 5 1674 1212 106 0 0 chr6 142866806 142866985 -6650052 + (GGA)n Simple_repeat Simple_repeat 2 180 0 5 1674 495 0 0 0 chr6 142867710 142867765 -6649272 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1674 997 244 28 65 chr6 142867804 142868094 -6648943 + B4 SINE B4 14 292 0 5 1674 418 256 123 43 chr6 142868316 142868479 -6648558 + RCHARR1 DNA MER1_type 1 176 -798 5 1675 894 242 50 107 chr6 142868491 142868614 -6648423 + MTE2b LTR MaLR 18 110 -269 5 1675 495 0 0 0 chr6 142868614 142868669 -6648368 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1675 894 242 50 107 chr6 142868669 142868929 -6648108 + MTE2b LTR MaLR 111 379 0 5 1675 660 248 151 8 chr6 142868935 142869187 -6647850 + RCHARR1 DNA MER1_type 187 474 -500 5 1675 857 155 21 119 chr6 142869179 142869414 -6647623 + RCHARR1 DNA MER1_type 757 968 -6 5 1675 1037 98 139 12 chr6 142870249 142870415 -6646622 - B2_Mm2 SINE B2 -7 188 2 6 1675 1327 152 24 0 chr6 142870531 142870741 -6646296 + B3 SINE B2 1 215 -1 6 1675 657 303 87 21 chr6 142871099 142871433 -6645604 - ORR1E LTR MaLR 0 359 4 6 1675 1205 94 0 6 chr6 142871579 142871742 -6645295 + (GGA)n Simple_repeat Simple_repeat 1 162 0 6 1675 1515 28 0 0 chr6 142871742 142871922 -6645115 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1675 1205 94 0 6 chr6 142871922 142872006 -6645031 + (GGA)n Simple_repeat Simple_repeat 1 83 0 6 1675 877 215 10 62 chr6 142872902 142873110 -6643927 - B3A SINE B2 -1 197 1 6 1675 320 211 26 0 chr6 142873529 142873605 -6643432 + ID4 SINE ID 2 79 -4 6 1675 422 267 26 8 chr6 142873672 142873789 -6643248 + ORR1E LTR MaLR 1 119 -240 6 1675 284 367 9 0 chr6 142874068 142874177 -6642860 - RSINE1 SINE B4 -45 120 11 6 1675 222 170 21 0 chr6 142874214 142874261 -6642776 + B2_Mm2 SINE B2 2 49 -146 6 1675 377 218 23 0 chr6 142874252 142874339 -6642698 + B3 SINE B2 128 216 0 6 1675 180 222 17 85 chr6 142874852 142874911 -6642126 - L2c LINE L2 0 3387 3333 6 1675 445 287 32 21 chr6 142875146 142875361 -6641676 - MER34 LTR ERV1 -51 520 311 6 1675 405 0 0 0 chr6 142875825 142875870 -6641167 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1675 678 239 0 0 chr6 142876073 142876211 -6640826 - B1F2 SINE Alu -11 138 1 6 1675 302 258 201 29 chr6 142876213 142876417 -6640620 - L1M1 LINE L1 -698 5605 5367 6 1675 476 193 9 0 chr6 142876850 142876959 -6640078 + CT-rich Low_complexity Low_complexity 2 111 0 6 1675 551 156 18 35 chr6 142876963 142877076 -6639961 - PB1D9 SINE Alu -5 115 5 6 1675 523 336 169 8 chr6 142877277 142877538 -6639499 + L4 LINE RTE 1099 1401 -628 6 1675 264 297 0 0 chr6 142878644 142878708 -6638329 - B4 SINE B4 -2 290 227 6 1675 253 254 0 0 chr6 142878772 142878831 -6638206 - B4 SINE B4 -207 85 27 6 1675 3983 97 14 9 chr6 142878931 142879502 -6637535 + Lx LINE L1 6081 6654 0 6 1675 277 200 0 0 chr6 142879743 142879808 -6637229 - B3A SINE B2 -133 65 1 6 1675 538 280 131 23 chr6 142880214 142880556 -6636481 - MTE2a LTR MaLR -5 354 1 6 1675 437 272 34 34 chr6 142880636 142880754 -6636283 - HAL1 LINE L1 -901 1606 1489 6 1675 675 257 119 64 chr6 142882158 142882453 -6634584 - MTEa LTR MaLR -38 341 31 6 1675 855 251 100 41 chr6 142882480 142882800 -6634237 - MTEa-int LTR MaLR -1 1579 1241 6 1675 853 315 44 11 chr6 142883258 142883531 -6633506 - ORR1E LTR MaLR -4 355 74 6 1675 2733 151 43 12 chr6 142883531 142884042 -6632995 + RLTR11A2 LTR ERVK 1 527 0 6 1675 850 124 0 14 chr6 142884065 142884204 -6632833 + B1_Mus2 SINE Alu 9 145 -2 6 1675 332 145 14 55 chr6 142884210 142884276 -6632761 - ORR1E LTR MaLR -282 77 15 6 1675 271 287 73 9 chr6 142884276 142884385 -6632652 - ORR1E-int LTR MaLR -1 1369 1254 6 1675 661 268 41 38 chr6 142884410 142884752 -6632285 - RLTR15 LTR ERVK -16 343 1 6 1675 1753 280 173 19 chr6 142884754 142885431 -6631606 - MTE-int LTR MaLR -169 1411 631 6 1675 277 385 23 0 chr6 142885587 142885717 -6631320 - MTE-int LTR MaLR -973 607 475 6 1675 527 240 8 8 chr6 142885735 142885857 -6631180 - ORR1E LTR MaLR -182 177 56 6 1675 1024 0 32 0 chr6 142886251 142886377 -6630660 + (TTAGG)n Simple_repeat Simple_repeat 1 130 0 6 1675 231 61 0 0 chr6 142886477 142886510 -6630527 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1675 258 295 112 25 chr6 142886553 142886633 -6630404 - RSINE1 SINE B4 -78 87 1 6 1675 736 265 99 70 chr6 142886659 142886943 -6630094 + B4 SINE B4 1 292 0 6 1675 195 286 42 14 chr6 142887490 142887561 -6629476 - L2c LINE L2 -19 3368 3296 6 1675 1469 192 154 3 chr6 142888181 142888500 -6628537 + ORR1B2 LTR MaLR 1 367 0 6 1675 368 238 19 47 chr6 142888691 142888797 -6628240 + B4 SINE B4 123 225 -67 6 1675 591 249 113 69 chr6 142888790 142888912 -6628125 + B4 SINE B4 81 216 -76 6 1675 246 32 0 0 chr6 142888912 142888943 -6628094 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1675 591 249 113 69 chr6 142888943 142889023 -6628014 + B4 SINE B4 217 292 0 6 1675 510 196 0 0 chr6 142889023 142889135 -6627902 + (CA)n Simple_repeat Simple_repeat 1 112 0 6 1675 396 270 0 0 chr6 142889201 142889389 -6627648 + (CA)n Simple_repeat Simple_repeat 1 188 0 6 1675 594 292 79 47 chr6 142889589 142889930 -6627107 + Charlie20a DNA Charlie 108 459 -348 6 1675 245 259 24 12 chr6 142890124 142890206 -6626831 - ID4_ SINE ID 0 83 1 6 1675 719 295 93 87 chr6 142890396 142890741 -6626296 + ORR1E LTR MaLR 4 350 -9 6 1675 189 0 0 0 chr6 142890775 142890796 -6626241 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 6 1675 981 162 0 0 chr6 142891109 142891322 -6625715 + (TG)n Simple_repeat Simple_repeat 1 213 0 6 1675 771 289 51 18 chr6 142891643 142891918 -6625119 + B4 SINE B4 6 289 -3 6 1675 795 21 0 0 chr6 142892532 142892625 -6624412 + (TC)n Simple_repeat Simple_repeat 1 93 0 6 1675 442 228 90 45 chr6 142892625 142892750 -6624287 - ID_B1 SINE B4 -89 135 2 6 1675 822 278 0 34 chr6 142893114 142893319 -6623718 - B3A SINE B2 0 198 1 6 1675 358 272 43 51 chr6 142893541 142893736 -6623301 - L1MA4 LINE L1 -216 5940 5746 6 1675 216 0 0 0 chr6 142894165 142894189 -6622848 + (CAGA)n Simple_repeat Simple_repeat 3 26 0 6 1675 372 94 0 0 chr6 142894249 142894302 -6622735 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1675 393 22 0 0 chr6 142894334 142894380 -6622657 + (CATA)n Simple_repeat Simple_repeat 2 47 0 6 1675 456 19 0 0 chr6 142894505 142894558 -6622479 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1675 470 332 39 31 chr6 142894563 142894821 -6622216 - B4A SINE B4 -30 262 3 6 1675 189 0 0 0 chr6 142895056 142895077 -6621960 + (G)n Simple_repeat Simple_repeat 1 21 0 6 1675 1324 95 26 11 chr6 142895365 142895556 -6621481 - B2_Mm2 SINE B2 0 195 2 6 1675 252 0 0 0 chr6 142895574 142895602 -6621435 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1675 594 0 0 0 chr6 142895602 142895667 -6621370 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1675 339 278 55 18 chr6 142895668 142895778 -6621259 - RSINE1 SINE B4 -50 115 2 6 1675 203 277 60 12 chr6 142895801 142895885 -6621152 + MIRm SINE MIR 12 99 -177 6 1675 498 169 0 12 chr6 142896541 142896625 -6620412 + B1_Mur1 SINE Alu 30 112 -37 6 1675 635 249 39 73 chr6 142896939 142897143 -6619894 + B3A SINE B2 2 198 0 6 1675 216 0 0 0 chr6 142897503 142897527 -6619510 + (CAGCT)n Simple_repeat Simple_repeat 3 26 0 6 1675 930 270 111 42 chr6 142897533 142897912 -6619125 - MLT1F2 LTR MaLR -146 414 10 6 1675 828 169 0 0 chr6 142897955 142898109 -6618928 + (CAGG)n Simple_repeat Simple_repeat 2 155 0 6 1675 329 202 64 47 chr6 142898200 142898371 -6618666 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 6 1675 687 210 0 21 chr6 142899221 142899362 -6617675 + B1F SINE Alu 7 144 -5 6 1675 192 294 96 21 chr6 142899674 142899768 -6617269 + MIRb SINE MIR 123 223 -45 6 1675 238 179 54 0 chr6 142900391 142900447 -6616590 + GA-rich Low_complexity Low_complexity 1 59 0 6 1675 1990 147 133 12 chr6 142901186 142901585 -6615452 + RMER15 LTR ERVL 1 447 -128 6 1675 265 116 0 0 chr6 142901620 142901663 -6615374 + RMER15 LTR ERVL 405 447 -128 6 1675 271 116 0 0 chr6 142901698 142901741 -6615296 + RMER15 LTR ERVL 405 447 -128 6 1675 265 116 0 0 chr6 142901750 142901793 -6615244 + RMER15 LTR ERVL 405 447 -128 6 1675 893 187 30 0 chr6 142901828 142901994 -6615043 + RMER15 LTR ERVL 405 575 0 6 1675 230 191 0 67 chr6 142902017 142902062 -6614975 + B4A SINE B4 81 122 -170 6 1675 245 231 277 0 chr6 142902028 142902093 -6614944 + ID_B1 SINE B4 85 167 -57 6 1675 441 0 0 0 chr6 142902163 142902212 -6614825 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1675 277 239 0 53 chr6 142902612 142902687 -6614350 - ID_B1 SINE B4 0 224 154 6 1675 729 256 32 23 chr6 142902861 142903081 -6613956 + ID_B1 SINE B4 3 224 0 6 1675 482 220 54 18 chr6 142903095 142903206 -6613831 + PB1D10 SINE Alu 1 115 -2 6 1675 242 210 155 36 chr6 142904275 142904359 -6612678 + PB1D7 SINE Alu 26 119 -1 6 1675 538 242 70 8 chr6 142904574 142904703 -6612334 - ID_B1 SINE B4 -65 159 23 6 1675 1181 68 0 7 chr6 142904742 142904890 -6612147 - B1_Mus2 SINE Alu 0 147 1 6 1675 200 290 7 48 chr6 142905457 142905602 -6611435 + CT-rich Low_complexity Low_complexity 3 141 0 6 1675 242 310 6 35 chr6 142905616 142905790 -6611247 + CT-rich Low_complexity Low_complexity 3 171 0 6 1675 910 67 0 0 chr6 142906271 142906391 -6610646 - B1_Mus1 SINE Alu -1 147 28 6 1675 251 309 87 67 chr6 142906389 142906493 -6610544 - PB1 SINE Alu -9 118 13 6 1675 241 250 62 93 chr6 142907555 142907652 -6609385 - PB1 SINE Alu -21 106 13 6 1675 831 249 0 11 chr6 142907830 142908005 -6609032 + B4 SINE B4 116 288 -4 6 1675 943 192 91 0 chr6 142908765 142908963 -6608074 + B3 SINE B2 1 216 0 6 1675 254 310 0 0 chr6 142913320 142913391 -6603646 + (CG)n Simple_repeat Simple_repeat 2 72 0 6 1675 465 19 0 0 chr6 142913392 142913446 -6603591 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1675 1272 27 0 0 chr6 142914108 142914254 -6602783 + B1_Mus2 SINE Alu 2 147 0 6 1675 399 245 89 117 chr6 142914288 142914468 -6602569 + B3A SINE B2 24 198 0 6 1675 516 296 12 36 chr6 142915047 142915212 -6601825 + RSINE1 SINE B4 5 165 0 6 1675 234 169 15 30 chr6 142915215 142915282 -6601755 + (TAA)n Simple_repeat Simple_repeat 2 67 0 6 1675 442 58 0 42 chr6 142916348 142916420 -6600617 + (TTTC)n Simple_repeat Simple_repeat 1 69 0 6 1675 14803 74 7 10 chr6 142916493 142918628 -6598409 - L1VL2 LINE L1 -633 2982 852 6 1675 225 24 47 23 chr6 142918630 142918673 -6598364 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1675 858 60 0 0 chr6 142919168 142919285 -6597752 + (TTC)n Simple_repeat Simple_repeat 2 118 0 6 1675 5712 85 48 8 chr6 142919931 142919991 -6597046 - L1VL2 LINE L1 -5448 887 832 6 1675 3947 43 19 0 chr6 142919991 142920457 -6596580 + MT2C_Mm LTR ERVL 1 475 0 6 1675 5712 85 48 8 chr6 142920457 142921187 -6595850 - L1VL2 LINE L1 -5504 831 65 6 1675 420 244 33 42 chr6 142921352 142921472 -6595565 - B4 SINE B4 -92 200 82 7 1675 614 277 45 0 chr6 142921477 142921679 -6595358 - L1MA6 LINE L1 -420 5880 5670 7 1675 495 333 75 60 chr6 142921903 142922155 -6594882 - B4A SINE B4 -35 257 2 7 1675 32 26 0 0 chr6 142922474 142922513 -6594524 + AT_rich Low_complexity Low_complexity 1 39 0 7 1675 3761 179 227 12 chr6 142922921 142923772 -6593265 - RMER1B Other Other -2 1064 31 7 1675 632 293 70 10 chr6 142923781 142923981 -6593056 - B4A SINE B4 -66 226 15 7 1675 742 280 10 54 chr6 142924072 142924208 -6592829 - B3 SINE B2 -4 212 83 7 1675 2353 101 0 58 chr6 142924208 142924555 -6592482 - ORR1A2 LTR MaLR 0 327 1 7 1675 742 280 10 54 chr6 142924555 142924622 -6592415 - B3 SINE B2 -134 82 18 7 1675 253 345 43 22 chr6 142924633 142924725 -6592312 - PB1D10 SINE Alu -10 107 14 7 1675 375 60 71 0 chr6 142925135 142925219 -6591818 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 7 1675 859 196 0 0 chr6 142925466 142925614 -6591423 + B1_Mur4 SINE Alu 3 150 0 7 1675 845 164 21 28 chr6 142925667 142925811 -6591226 + B1_Mus1 SINE Alu 6 148 0 7 1675 628 266 42 177 chr6 142925823 142926038 -6590999 + B3 SINE B2 9 216 0 7 1675 482 208 19 47 chr6 142926050 142926156 -6590881 + B3 SINE B2 114 216 0 7 1675 1916 161 3 13 chr6 142926816 142927130 -6589907 - MTD LTR MaLR -106 313 3 7 1675 960 221 35 0 chr6 142927392 142927591 -6589446 + B3 SINE B2 3 208 -8 7 1675 306 164 73 0 chr6 142927642 142927807 -6589230 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 1675 259 200 55 0 chr6 142928024 142928079 -6588958 + ID_B1 SINE B4 96 153 -71 7 1675 23 0 0 0 chr6 142928124 142928147 -6588890 + AT_rich Low_complexity Low_complexity 1 23 0 7 1675 200 176 39 0 chr6 142928287 142928338 -6588699 + (TTAA)n Simple_repeat Simple_repeat 1 53 0 7 1675 467 285 69 18 chr6 142928390 142928690 -6588347 + L1MC3 LINE L1 5567 5888 -1897 7 1675 203 406 0 0 chr6 142929262 142929368 -6587669 + GA-rich Low_complexity Low_complexity 5 110 0 7 1675 217 224 0 39 chr6 142930154 142930205 -6586832 + ID SINE ID 10 58 -166 7 1675 613 264 199 23 chr6 142930383 142930685 -6586352 - ORR1E LTR MaLR 0 359 5 7 1675 405 167 179 0 chr6 142930711 142930789 -6586248 - B1F1 SINE Alu -51 98 7 7 1675 219 255 26 86 chr6 142931493 142931609 -6585428 + L3 LINE CR1 4012 4120 -369 7 1675 898 227 82 0 chr6 142931784 142931978 -6585059 + B3 SINE B2 2 211 -5 7 1675 223 227 66 13 chr6 142931998 142932074 -6584963 + B4A SINE B4 2 81 -211 7 1675 1242 111 0 0 chr6 142932162 142932696 -6584341 + (CA)n Simple_repeat Simple_repeat 1 534 0 7 1675 2940 72 30 13 chr6 142932715 142933108 -6583929 + MTB LTR MaLR 1 400 0 7 1675 23 33 0 0 chr6 142933128 142933158 -6583879 + AT_rich Low_complexity Low_complexity 1 30 0 7 1675 207 0 0 0 chr6 142933189 142933212 -6583825 + (TA)n Simple_repeat Simple_repeat 2 24 0 7 1675 825 66 0 0 chr6 142933517 142933638 -6583399 + (CA)n Simple_repeat Simple_repeat 2 122 0 7 1675 709 226 102 53 chr6 142933651 142933857 -6583180 + B3 SINE B2 1 216 0 7 1675 281 56 0 0 chr6 142934001 142934037 -6583000 - Lx3C LINE L1 -711 6265 6230 7 1675 2304 124 40 0 chr6 142934037 142934391 -6582646 + Lx3B LINE L1 6597 6964 -9 7 1675 7770 31 11 0 chr6 142934567 142935450 -6581587 - RLTR13B1 LTR ERVK 0 893 1 7 1675 1160 126 17 0 chr6 142935458 142935633 -6581404 + B2_Mm1t SINE B2 2 179 -14 7 1675 371 128 161 22 chr6 142935699 142935810 -6581227 + B2_Mm2 SINE B2 47 191 -2 7 1675 186 43 0 0 chr6 142936096 142936119 -6580918 + (CCTG)n Simple_repeat Simple_repeat 2 24 0 7 1675 309 316 48 58 chr6 142936136 142936240 -6580797 - PB1D10 SINE Alu -10 107 5 7 1675 250 281 140 40 chr6 142937340 142937440 -6579597 - B3 SINE B2 -1 215 106 7 1675 269 319 54 65 chr6 142937997 142938165 -6578872 + MLT1L LTR MaLR 122 287 -323 7 1675 1146 101 0 0 chr6 142938551 142938780 -6578257 + (TG)n Simple_repeat Simple_repeat 1 229 0 7 1675 726 205 0 0 chr6 142938782 142938904 -6578133 - RSINE1 SINE B4 -41 124 3 7 1675 514 286 54 39 chr6 142939531 142939735 -6577302 + B3 SINE B2 1 207 -9 7 1675 344 60 0 0 chr6 142939818 142939868 -6577169 + L1_Mus1 LINE L1 6449 6498 -69 7 1675 683 224 7 7 chr6 142939919 142940063 -6576974 - RSINE1 SINE B4 -17 148 5 7 1675 306 0 0 0 chr6 142940355 142940389 -6576648 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1675 222 37 0 0 chr6 142940389 142940415 -6576622 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1675 883 281 171 34 chr6 142940649 142940977 -6576060 + MTE2b LTR MaLR 3 375 -4 7 1675 479 252 55 8 chr6 142941533 142941661 -6575376 + RSINE1 SINE B4 4 137 -28 7 1675 672 231 92 46 chr6 142941663 142941858 -6575179 + MTEa LTR MaLR 14 217 -162 7 1675 623 93 0 33 chr6 142941860 142941982 -6575055 + (TCTCCC)n Simple_repeat Simple_repeat 2 119 0 7 1675 308 307 82 41 chr6 142941982 142942128 -6574909 - HAL1-3A_ME LINE L1 -422 2436 2285 7 1675 516 296 34 39 chr6 142942131 142942310 -6574727 + MTEa LTR MaLR 201 378 -1 7 1675 228 298 17 103 chr6 142942385 142942501 -6574536 + B4 SINE B4 2 107 -185 7 1675 251 196 88 0 chr6 142943183 142943331 -6573706 + (TA)n Simple_repeat Simple_repeat 1 161 0 7 1675 636 295 34 10 chr6 142943362 142943571 -6573466 - MER95 LTR ERV -136 295 82 7 1675 394 361 41 0 chr6 142943599 142943768 -6573269 - MER2 DNA MER2_type -5 340 165 7 1675 200 34 0 33 chr6 142943946 142943976 -6573061 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 7 1675 251 235 80 27 chr6 142944571 142944671 -6572366 - PB1D10 SINE Alu 0 117 16 7 1675 910 127 0 22 chr6 142944748 142944885 -6572152 + MYSERV16_I-int LTR ERVK 2251 2384 -458 7 1675 917 85 0 0 chr6 142944886 142945016 -6572021 + B1_Mus2 SINE Alu 8 137 -10 7 1675 261 0 0 0 chr6 142945016 142945045 -6571992 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 1675 1657 167 146 5 chr6 142945046 142945487 -6571550 + MYSERV16_I-int LTR ERVK 1820 2262 -64 7 1675 2514 109 126 2 chr6 142945487 142945883 -6571154 + BGLII_A LTR ERVK 1 445 0 7 1675 1217 40 25 21 chr6 142946172 142946457 -6570580 + (GGGA)n Simple_repeat Simple_repeat 1 286 0 7 1675 301 210 32 0 chr6 142946539 142946614 -6570423 + ID4_ SINE ID 8 84 -68 7 1675 285 222 96 24 chr6 142946619 142946702 -6570335 + PB1D10 SINE Alu 29 117 0 7 1675 1184 172 87 7 chr6 142948153 142948428 -6568609 - ORR1D1 LTR MaLR -77 297 1 7 1675 450 265 29 29 chr6 142948709 142948845 -6568192 - B1F2 SINE Alu -1 148 13 7 1675 339 222 0 27 chr6 142949168 142949242 -6567795 - B3A SINE B2 -123 75 4 7 1675 686 240 106 30 chr6 142949393 142949483 -6567554 - B3 SINE B2 -3 213 117 7 1675 4488 121 30 17 chr6 142949483 142950230 -6566807 + RMER6A LTR ERVK 1 756 0 7 1675 686 240 106 30 chr6 142950230 142950337 -6566700 - B3 SINE B2 -100 116 1 7 1675 483 100 0 0 chr6 142950347 142950417 -6566620 + (CGTG)n Simple_repeat Simple_repeat 1 70 0 7 1675 634 263 25 6 chr6 142950431 142950588 -6566449 - B3A SINE B2 -38 160 1 7 1675 462 273 0 0 chr6 142951500 142951628 -6565409 + (CA)n Simple_repeat Simple_repeat 1 128 0 7 1675 424 239 11 11 chr6 142951628 142951806 -6565231 + (CTCA)n Simple_repeat Simple_repeat 1 178 0 7 1675 310 290 85 21 chr6 142951836 142951977 -6565060 - MTE2b LTR MaLR -6 373 224 7 1675 533 256 22 92 chr6 142952429 142952657 -6564380 + ID_B1 SINE B4 1 212 -12 7 1675 612 237 7 0 chr6 142952531 142952670 -6564367 + B1_Mur1 SINE Alu 9 148 -1 7 1675 267 260 67 39 chr6 142952681 142952785 -6564252 + PB1D10 SINE Alu 10 116 -1 7 1675 1098 117 0 0 chr6 142952806 142952985 -6564052 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 7 1675 416 331 7 0 chr6 142952993 142953147 -6563890 - Lx7 LINE L1 -379 7317 7163 7 1675 655 231 7 7 chr6 142953151 142953295 -6563742 + B4A SINE B4 116 259 -33 7 1675 598 288 106 7 chr6 142953323 142953606 -6563431 + Tigger1 DNA MER2_type 483 793 -1625 7 1675 433 303 145 26 chr6 142953941 142954168 -6562869 + MTEa LTR MaLR 119 372 -7 7 1675 485 208 20 0 chr6 142954176 142954277 -6562760 - MTE2b LTR MaLR -271 108 6 7 1675 370 339 110 24 chr6 142954333 142954669 -6562368 + L1M5 LINE L1 2651 3015 -3131 7 1675 2669 73 108 0 chr6 142954801 142955172 -6561865 - RLTR10A LTR ERVK 0 411 1 7 1675 300 233 0 0 chr6 142955362 142955435 -6561602 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 7 1675 2257 89 62 32 chr6 142955485 142955857 -6561180 + LTRIS4 LTR ERV1 125 507 0 7 1675 299 171 29 0 chr6 142955857 142955927 -6561110 + (TATG)n Simple_repeat Simple_repeat 2 73 0 7 1675 250 289 196 7 chr6 142956221 142956374 -6560663 + L1MD LINE L1 2322 2503 -3643 7 1675 249 256 39 0 chr6 142956488 142956566 -6560471 + L1M5 LINE L1 2540 2620 -3526 7 1675 613 149 0 0 chr6 142956578 142956685 -6560352 + B3 SINE B2 5 111 -105 7 1675 1542 17 23 0 chr6 142956761 142956938 -6560099 + B2_Mm1a SINE B2 2 182 -11 7 1675 192 40 0 0 chr6 142956938 142956963 -6560074 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1675 201 39 0 0 chr6 142958295 142958321 -6558716 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1675 190 0 32 32 chr6 142959076 142959107 -6557930 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 1675 246 136 0 0 chr6 142959236 142959280 -6557757 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1675 29 28 0 0 chr6 142959451 142959487 -6557550 + AT_rich Low_complexity Low_complexity 1 36 0 7 1675 2352 50 0 36 chr6 142962645 142962861 -6554176 + L1Md_F2 LINE L1 6273 6488 -94 8 1675 3624 10 2 0 chr6 142962861 142963256 -6553781 - MTA_Mm LTR MaLR 0 396 1 8 1675 9587 24 2 0 chr6 142963256 142964351 -6552686 - MTA_Mm-int LTR MaLR 0 1098 2 8 1675 3632 8 2 0 chr6 142964352 142964747 -6552290 - MTA_Mm LTR MaLR 0 396 1 8 1675 2352 50 0 36 chr6 142964747 142964836 -6552201 + L1Md_F2 LINE L1 6489 6569 -13 8 1675 1086 207 10 0 chr6 142964844 142965047 -6551990 - B3 SINE B2 -11 205 1 8 1675 1164 21 21 0 chr6 142966100 142966243 -6550794 + B1_Mus2 SINE Alu 2 147 0 8 1675 462 36 0 0 chr6 142966745 142966801 -6550236 + (GA)n Simple_repeat Simple_repeat 1 56 0 8 1675 214 177 48 0 chr6 142968216 142968278 -6548759 + (TTTAA)n Simple_repeat Simple_repeat 3 67 0 8 1675 210 150 0 0 chr6 142968383 142968423 -6548614 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1675 1252 28 0 0 chr6 142969569 142969714 -6547323 + B1_Mus2 SINE Alu 1 145 -2 8 1675 233 281 12 35 chr6 142970469 142970554 -6546483 + ID4_ SINE ID 1 83 0 8 1675 284 330 50 0 chr6 142970794 142970894 -6546143 + PB1D7 SINE Alu 1 105 -15 8 1675 526 271 16 0 chr6 142970807 142970929 -6546108 + ID_B1 SINE B4 95 218 -6 8 1675 23 0 0 0 chr6 142971163 142971186 -6545851 + AT_rich Low_complexity Low_complexity 1 23 0 8 1675 1667 42 0 0 chr6 142971673 142971866 -6545171 - B2_Mm1a SINE B2 0 193 1 8 1675 234 320 81 20 chr6 142972070 142972169 -6544868 - RSINE1 SINE B4 -2 163 59 8 1675 278 159 16 16 chr6 142972563 142972627 -6544410 + MLT1A1 LTR MaLR 312 375 -33 8 1675 1136 41 0 76 chr6 142972735 142972893 -6544144 - B1_Mus2 SINE Alu 0 147 2 8 1675 996 44 0 0 chr6 142972976 142973111 -6543926 + B1_Mus1 SINE Alu 14 148 0 8 1675 216 130 0 0 chr6 142973111 142973157 -6543880 + (A)n Simple_repeat Simple_repeat 1 46 0 8 1675 762 243 69 0 chr6 142976465 142976654 -6540383 - B3 SINE B2 -1 215 14 8 1675 685 142 125 0 chr6 142977225 142977345 -6539692 + B1_Mur4 SINE Alu 5 139 -11 8 1675 1037 97 0 0 chr6 142977832 142977966 -6539071 + B1_Mus1 SINE Alu 2 135 -13 8 1675 419 0 0 19 chr6 142977966 142978018 -6539019 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 8 1675 945 105 0 47 chr6 142979494 142979644 -6537393 - B1_Mus1 SINE Alu -1 147 5 8 1675 231 269 30 0 chr6 142979923 142979990 -6537047 + ID_B1 SINE B4 155 223 -1 8 1675 623 238 24 72 chr6 142980297 142980427 -6536610 + B3A SINE B2 1 131 -67 8 1675 1447 253 48 3 chr6 142980427 142980784 -6536253 + ORR1D1 LTR MaLR 2 374 0 8 1675 623 238 24 72 chr6 142980784 142980861 -6536176 + B3A SINE B2 132 198 0 8 1675 244 302 85 14 chr6 142981279 142981420 -6535617 - MER5A DNA MER1_type -9 180 30 8 1675 383 263 45 45 chr6 142981545 142981724 -6535313 + B3A SINE B2 9 187 -11 8 1675 318 258 40 30 chr6 142982225 142982325 -6534712 + B1F2 SINE Alu 3 103 -46 8 1675 927 183 0 0 chr6 142982367 142982547 -6534490 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 8 1675 488 282 164 0 chr6 142982747 142982924 -6534113 - ID_B1 SINE B4 -18 206 1 8 1675 1845 140 125 3 chr6 142982971 142983315 -6533722 - ORR1B1 LTR MaLR -7 387 2 8 1675 340 119 29 43 chr6 142984507 142984577 -6532460 + HAL1-3A_ME LINE L1 1976 2044 -814 8 1675 224 287 91 11 chr6 142984611 142984699 -6532338 - L2a LINE L2 -268 3158 3064 8 1675 477 0 0 0 chr6 142985654 142985707 -6531330 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1675 623 231 13 20 chr6 142985744 142985894 -6531143 + ID_B1 SINE B4 76 224 0 8 1675 525 294 49 0 chr6 142985894 142986037 -6531000 + RSINE1 SINE B4 1 150 -15 8 1675 299 243 57 19 chr6 142986662 142986767 -6530270 + PB1D10 SINE Alu 1 109 -8 8 1675 345 240 75 19 chr6 142987158 142987264 -6529773 - PB1D10 SINE Alu -2 115 4 8 1675 953 178 97 0 chr6 142987853 142988013 -6529024 + B3 SINE B2 2 165 -51 8 1675 180 77 0 0 chr6 142988013 142988039 -6528998 + (CATA)n Simple_repeat Simple_repeat 2 27 0 8 1675 953 178 97 0 chr6 142988039 142988063 -6528974 + B3 SINE B2 166 202 -14 8 1675 377 205 96 30 chr6 142988240 142988433 -6528604 + L1MEe LINE L1 1382 1590 -4494 8 1675 538 186 119 0 chr6 142988782 142988900 -6528137 + B3 SINE B2 1 132 -84 8 1675 850 196 0 0 chr6 142988952 142989100 -6527937 + B1_Mur4 SINE Alu 1 148 -2 8 1675 1412 69 21 21 chr6 142989211 142989404 -6527633 + B2_Mm1t SINE B2 1 193 0 8 1675 1809 249 88 29 chr6 142990505 142991083 -6525954 + Lx8 LINE L1 6453 7064 -409 8 1675 12079 70 6 43 chr6 142991852 142992427 -6524610 - L1_Mur1 LINE L1 -109 5777 5252 8 1675 1479 22 15 67 chr6 142992427 142992622 -6524415 - B2_Mm1a SINE B2 -6 187 3 8 1675 12079 70 6 43 chr6 142992622 142993760 -6523277 - L1_Mur1 LINE L1 -635 5251 4128 8 1675 6970 77 120 7 chr6 142993760 142993912 -6523125 + Lx3_Mus LINE L1 5877 6034 -975 8 1675 468 0 0 0 chr6 142993912 142993964 -6523073 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 8 1675 6970 77 120 7 chr6 142993964 142994829 -6522208 + Lx3_Mus LINE L1 6035 7008 -1 8 1675 48 0 0 0 chr6 142994848 142994896 -6522141 + AT_rich Low_complexity Low_complexity 1 48 0 8 1675 232 304 0 0 chr6 142994931 142994946 -6522091 + A-rich Low_complexity Low_complexity 1 15 0 8 1675 1195 54 0 20 chr6 142994946 142995096 -6521941 + B1_Mus1 SINE Alu 2 148 0 8 1675 232 304 0 0 chr6 142995096 142995159 -6521878 + A-rich Low_complexity Low_complexity 16 78 0 8 1675 823 194 138 11 chr6 142996980 142997168 -6519869 + B3 SINE B2 1 212 -4 8 1675 856 159 235 0 chr6 142997479 142997649 -6519388 + B3 SINE B2 1 210 -6 8 1675 282 116 0 0 chr6 142998132 142998175 -6518862 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 8 1675 484 167 122 9 chr6 142998181 142998296 -6518741 - B1_Mur1 SINE Alu -2 147 20 8 1675 264 250 51 26 chr6 142999089 142999167 -6517870 - ID_B1 SINE B4 -33 191 112 8 1676 451 182 231 0 chr6 143000805 143000926 -6516111 - B1F SINE Alu 0 149 1 1 1676 31 76 0 0 chr6 143002438 143002504 -6514533 + AT_rich Low_complexity Low_complexity 1 66 0 2 1676 331 310 34 42 chr6 143002930 143003048 -6513989 - PB1D10 SINE Alu 0 117 1 3 1676 558 134 244 0 chr6 143003769 143003888 -6513149 - B1_Mus1 SINE Alu 0 148 1 4 1676 405 0 0 0 chr6 143005105 143005150 -6511887 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1676 852 223 43 24 chr6 143005292 143005503 -6511534 - B3 SINE B2 0 216 2 6 1676 351 219 5 87 chr6 143005795 143005990 -6511047 + (TCTG)n Simple_repeat Simple_repeat 1 179 0 7 1676 363 209 0 102 chr6 143006011 143006208 -6510829 + (TCTG)n Simple_repeat Simple_repeat 3 179 0 7 1676 679 156 0 0 chr6 143009681 143009790 -6507247 - B3 SINE B2 -107 109 1 8 1676 312 279 52 37 chr6 143011296 143011430 -6505607 + Tigger15a DNA TcMar 207 342 -373 9 1676 483 281 62 0 chr6 143011935 143012063 -6504974 + RSINE1 SINE B4 2 137 -28 1 1676 2403 269 144 22 chr6 143012364 143013420 -6503617 + Lx9 LINE L1 6306 7490 -154 1 1676 439 244 59 0 chr6 143013561 143013680 -6503357 + B1F SINE Alu 24 149 0 1 1676 651 37 0 0 chr6 143014198 143014280 -6502757 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1676 1160 74 0 0 chr6 143014850 143014998 -6502039 + B1_Mus1 SINE Alu 1 148 0 1 1676 189 94 0 0 chr6 143014998 143015030 -6502007 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1676 24 53 0 0 chr6 143015322 143015360 -6501677 + AT_rich Low_complexity Low_complexity 1 38 0 1 1676 22 35 0 0 chr6 143015873 143015902 -6501135 + AT_rich Low_complexity Low_complexity 1 29 0 1 1676 21 71 0 0 chr6 143015917 143015959 -6501078 + AT_rich Low_complexity Low_complexity 1 42 0 1 1676 22 80 0 0 chr6 143018071 143018121 -6498916 + AT_rich Low_complexity Low_complexity 1 50 0 1 1676 253 272 12 24 chr6 143018797 143018880 -6498157 + ID4_ SINE ID 1 82 -1 2 1676 24 0 0 0 chr6 143018956 143018980 -6498057 + AT_rich Low_complexity Low_complexity 1 24 0 2 1676 188 34 0 33 chr6 143019067 143019097 -6497940 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1676 924 62 76 23 chr6 143019097 143019228 -6497809 - B1_Mm SINE Alu -9 138 1 2 1676 359 329 42 0 chr6 143019301 143019468 -6497569 - MER2 DNA MER2_type -8 337 164 2 1676 21 26 0 26 chr6 143019940 143019957 -6497080 + AT_rich Low_complexity Low_complexity 1 17 0 2 1676 1393 71 16 21 chr6 143019957 143020144 -6496893 + B2_Mm2 SINE B2 2 187 -8 2 1676 21 26 0 26 chr6 143020144 143020165 -6496872 + AT_rich Low_complexity Low_complexity 1 21 0 2 1676 23 0 0 0 chr6 143021467 143021490 -6495547 + AT_rich Low_complexity Low_complexity 1 23 0 2 1676 237 61 0 0 chr6 143024019 143024037 -6493000 + (GA)n Simple_repeat Simple_repeat 1 18 0 2 1676 189 0 0 0 chr6 143024037 143024058 -6492979 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1676 237 61 0 0 chr6 143024058 143024072 -6492965 + (GA)n Simple_repeat Simple_repeat 1 14 0 3 1676 750 165 0 0 chr6 143024071 143024241 -6492796 + (TG)n Simple_repeat Simple_repeat 2 171 0 3 1676 258 32 0 0 chr6 143024241 143024272 -6492765 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 1676 207 69 0 0 chr6 143024272 143024300 -6492737 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1676 425 241 88 9 chr6 143024352 143024465 -6492572 - PB1D10 SINE Alu -5 122 1 3 1676 1797 144 128 21 chr6 143025660 143026036 -6491001 + MTC LTR MaLR 1 416 -5 3 1676 441 0 0 0 chr6 143026220 143026269 -6490768 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1676 255 93 0 0 chr6 143026271 143026314 -6490723 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1676 236 301 13 52 chr6 143027286 143027348 -6489689 + B4A SINE B4 1 62 -230 3 1676 234 0 0 0 chr6 143027348 143027374 -6489663 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1676 499 207 621 49 chr6 143027374 143027521 -6489516 + B4A SINE B4 63 292 0 3 1676 306 291 136 149 chr6 143027811 143028025 -6489012 + B4 SINE B4 1 211 -81 4 1676 188 86 29 0 chr6 143028025 143028060 -6488977 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1676 267 193 88 0 chr6 143028113 143028170 -6488867 + B4 SINE B4 228 289 -3 4 1676 1805 57 0 42 chr6 143028896 143029134 -6487903 + L1_Mus1 LINE L1 6340 6567 0 4 1676 277 261 53 23 chr6 143030835 143030968 -6486069 - Charlie1a DNA MER1_type -15 1440 1304 4 1676 330 270 48 14 chr6 143031164 143031273 -6485764 - B1F1 SINE Alu -39 111 3 4 1676 211 238 15 73 chr6 143032001 143032069 -6484968 + ID2 SINE ID 18 81 -2 4 1676 186 71 0 0 chr6 143032129 143032157 -6484880 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1676 418 211 220 0 chr6 143032217 143032326 -6484711 - B1_Mus2 SINE Alu -14 133 1 4 1676 230 118 0 0 chr6 143032385 143032419 -6484618 + MLT1J LTR MaLR 100 133 -379 4 1676 819 170 20 26 chr6 143032702 143032853 -6484184 - B1_Mur4 SINE Alu 0 150 1 5 1676 244 29 0 54 chr6 143032918 143032955 -6484082 + U2 snRNA snRNA 4 38 -150 5 1676 1473 152 109 90 chr6 143032948 143033316 -6483721 + ORR1C2 LTR MaLR 10 384 0 5 1676 4052 235 93 41 chr6 143033316 143033814 -6483223 + ORR1C2-int LTR MaLR 1 531 -839 5 1676 849 172 8 0 chr6 143033814 143033948 -6483089 + B1_Mur4 SINE Alu 1 135 -15 5 1676 4052 235 93 41 chr6 143033948 143034323 -6482714 + ORR1C2-int LTR MaLR 532 932 -438 5 1676 2668 190 13 42 chr6 143034323 143034866 -6482171 + RLTR11A2 LTR ERVK 1 527 0 5 1676 4052 235 93 41 chr6 143034866 143035293 -6481744 + ORR1C2-int LTR MaLR 933 1370 0 5 1676 1647 170 139 3 chr6 143035294 143035631 -6481406 + ORR1C2 LTR MaLR 2 384 0 5 1676 273 235 11 23 chr6 143036868 143036955 -6480082 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 1676 515 304 62 43 chr6 143036962 143037172 -6479865 - B3 SINE B2 -2 214 1 5 1676 359 281 35 23 chr6 143037211 143037382 -6479655 + L1MB4 LINE L1 4882 5054 -1092 5 1676 1108 89 0 0 chr6 143037459 143037605 -6479432 + B1_Mus2 SINE Alu 2 147 0 5 1676 1364 108 0 39 chr6 143037639 143037842 -6479195 + B2_Mm2 SINE B2 1 195 0 5 1676 309 109 0 0 chr6 143037842 143037888 -6479149 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 6 1676 734 181 64 21 chr6 143037889 143038030 -6479007 + B1_Mus1 SINE Alu 1 147 -1 6 1676 198 191 0 0 chr6 143038146 143038193 -6478844 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1676 445 150 549 0 chr6 143038248 143038381 -6478656 + B3 SINE B2 1 206 -10 6 1676 192 152 0 0 chr6 143038382 143038415 -6478622 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 6 1676 452 269 112 12 chr6 143038494 143038663 -6478374 + L1MB4 LINE L1 5944 6129 -51 5 1676 274 308 18 27 chr6 143038759 143038869 -6478168 + PB1D10 SINE Alu 4 112 -5 6 1676 428 219 76 0 chr6 143039264 143039369 -6477668 + B1_Mur2 SINE Alu 2 113 -7 6 1676 510 220 9 15 chr6 143039751 143039869 -6477168 + B1F1 SINE Alu 6 125 -2 6 1676 1255 40 0 0 chr6 143040019 143040167 -6476870 + B1_Mus1 SINE Alu 1 148 0 6 1676 652 145 201 13 chr6 143040661 143040815 -6476222 + B2_Mm2 SINE B2 3 185 -10 6 1676 1286 27 0 0 chr6 143042086 143042233 -6474804 + B1_Mm SINE Alu 1 147 0 7 1676 285 100 0 0 chr6 143042234 143042284 -6474753 + (A)n Simple_repeat Simple_repeat 1 50 0 7 1676 634 149 113 13 chr6 143042910 143043060 -6473977 - Lx2B LINE L1 -6 6994 6830 7 1676 375 121 0 0 chr6 143043233 143043291 -6473746 + (TTA)n Simple_repeat Simple_repeat 1 58 0 7 1676 893 209 43 10 chr6 143044132 143044340 -6472697 + B3 SINE B2 2 216 0 7 1676 389 238 79 0 chr6 143044471 143044572 -6472465 - PB1D9 SINE Alu -7 113 5 7 1676 550 279 65 0 chr6 143044702 143044856 -6472181 - RSINE1 SINE B4 0 165 2 7 1676 355 209 184 11 chr6 143045003 143045090 -6471947 + PB1D10 SINE Alu 11 112 -5 7 1676 220 274 0 0 chr6 143045139 143045190 -6471847 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1676 732 269 23 6 chr6 143045198 143045374 -6471663 - B3 SINE B2 -36 180 2 7 1676 1338 203 142 0 chr6 143045435 143045760 -6471277 + ORR1D1 LTR MaLR 4 374 0 8 1676 2106 200 63 28 chr6 143045922 143046431 -6470606 + RLTR11A2 LTR ERVK 1 527 0 8 1676 25 0 0 0 chr6 143047457 143047482 -6469555 + AT_rich Low_complexity Low_complexity 1 25 0 8 1676 31 0 0 0 chr6 143048365 143048396 -6468641 + GC_rich Low_complexity Low_complexity 1 31 0 8 1676 435 275 0 0 chr6 143049014 143049134 -6467903 + PB1D7 SINE Alu 1 120 0 8 1676 330 115 0 0 chr6 143049134 143049186 -6467851 + (A)n Simple_repeat Simple_repeat 1 52 0 8 1676 283 307 123 23 chr6 143049336 143049466 -6467571 - B1F1 SINE Alu -6 143 1 8 1676 558 269 15 7 chr6 143050585 143050720 -6466317 + B1_Mur1 SINE Alu 1 136 -13 8 1676 286 232 0 28 chr6 143050911 143050982 -6466055 + PB1D7 SINE Alu 50 118 -2 8 1676 368 224 26 0 chr6 143050991 143051067 -6465970 + ID2 SINE ID 5 82 -1 8 1676 245 320 0 0 chr6 143051641 143051716 -6465321 + Tigger5 DNA MER2_type 46 120 -2286 9 1676 602 205 63 6 chr6 143051733 143051865 -6465172 + ID_B1 SINE B4 89 226 -66 9 1676 882 218 32 0 chr6 143052544 143052732 -6464305 + B3 SINE B2 23 216 0 9 1676 508 238 9 3 chr6 143053442 143053569 -6463468 - B1_Mur2 SINE Alu -21 126 2 9 1676 615 261 30 45 chr6 143053578 143053779 -6463258 - B3A SINE B2 0 198 1 9 1676 1354 94 10 10 chr6 143053825 143054018 -6463019 - B2_Mm1t SINE B2 0 193 1 9 1676 411 326 28 0 chr6 143054208 143054349 -6462688 - B1F1 SINE Alu -2 147 3 9 1676 2321 106 16 0 chr6 143054874 143055194 -6461843 + ORR1A2 LTR MaLR 1 325 -2 9 1676 483 251 121 12 chr6 143055410 143055575 -6461462 - B3A SINE B2 -15 183 1 9 1676 668 251 96 0 chr6 143056034 143056221 -6460816 + ID_B1 SINE B4 3 207 -17 9 1676 741 194 68 6 chr6 143056488 143056664 -6460373 + RMER20A LTR ERVK 1 187 -329 1 1676 1187 169 146 100 chr6 143056689 143057038 -6459999 + RLTR41 LTR ERV1 62 426 -20 1 1676 1089 102 6 0 chr6 143057039 143057215 -6459822 + RMER20A LTR ERVK 184 360 -156 1 1676 435 287 72 20 chr6 143057419 143057448 -6459589 - B3A SINE B2 -11 187 153 1 1676 389 109 0 15 chr6 143057448 143057513 -6459524 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1676 435 287 72 20 chr6 143057513 143057636 -6459401 - B3A SINE B2 -46 152 27 1 1676 225 308 0 0 chr6 143058204 143058282 -6458755 - BC1_Mm scRNA scRNA -59 93 16 1 1676 510 287 22 22 chr6 143058962 143059101 -6457936 - B3 SINE B2 0 216 78 1 1676 351 96 0 0 chr6 143059213 143059265 -6457772 + (T)n Simple_repeat Simple_repeat 1 52 0 1 1676 858 112 46 53 chr6 143059295 143059446 -6457591 - B1_Mur4 SINE Alu 0 150 1 1 1676 960 316 40 47 chr6 143059446 143059874 -6457163 - MTE-int LTR MaLR -1094 486 62 1 1676 28 0 0 0 chr6 143060226 143060254 -6456783 + AT_rich Low_complexity Low_complexity 1 28 0 1 1676 1250 34 7 0 chr6 143060273 143060419 -6456618 + B1_Mm SINE Alu 1 147 0 1 1676 308 143 48 0 chr6 143060441 143060525 -6456512 + (TA)n Simple_repeat Simple_repeat 2 89 0 1 1676 21 36 0 0 chr6 143060939 143060967 -6456070 + AT_rich Low_complexity Low_complexity 1 28 0 1 1676 661 272 19 93 chr6 143061066 143061325 -6455712 + ORR1E-int LTR MaLR 876 1115 -465 1 1676 360 254 94 30 chr6 143061330 143061495 -6455542 + ORR1E-int LTR MaLR 1182 1478 -102 1 1676 244 135 19 37 chr6 143061670 143061724 -6455313 + CT-rich Low_complexity Low_complexity 2 54 0 1 1676 610 113 9 9 chr6 143061725 143061832 -6455205 + (TCCC)n Simple_repeat Simple_repeat 4 110 0 1 1676 1232 41 0 0 chr6 143062047 143062194 -6454843 + B1_Mus2 SINE Alu 1 147 0 1 1676 180 0 0 0 chr6 143062194 143062214 -6454823 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1676 241 215 21 0 chr6 143062233 143062326 -6454711 + (TA)n Simple_repeat Simple_repeat 1 95 0 1 1676 1347 157 37 58 chr6 143062340 143062556 -6454481 - ORR1C2 LTR MaLR -66 318 95 1 1676 1241 34 7 0 chr6 143062556 143062703 -6454334 - B1_Mus1 SINE Alu 0 148 1 1 1676 1347 157 37 58 chr6 143062703 143062811 -6454226 - ORR1C2 LTR MaLR -290 94 1 1 1676 504 0 0 0 chr6 143062902 143062958 -6454079 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1676 678 268 166 29 chr6 143063169 143063477 -6453560 + ORR1E LTR MaLR 4 353 -6 1 1676 312 70 0 0 chr6 143063505 143063548 -6453489 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 1 1676 504 0 0 0 chr6 143064001 143064057 -6452980 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1676 255 313 42 42 chr6 143064057 143064177 -6452860 - RSINE1 SINE B4 -43 122 3 1 1676 1164 181 83 52 chr6 143064227 143064612 -6452425 + RMER17C LTR ERVK 1 397 -13 1 1676 234 167 0 0 chr6 143064613 143064646 -6452391 + T-rich Low_complexity Low_complexity 16 48 0 1 1676 1046 44 72 7 chr6 143064646 143064784 -6452253 - B1_Mm SINE Alu 0 147 1 1 1676 234 167 0 0 chr6 143064784 143064798 -6452239 + T-rich Low_complexity Low_complexity 2 15 0 1 1676 258 330 11 22 chr6 143064902 143064992 -6452045 + Cheshire DNA MER1_type 2 90 -2330 1 1676 684 123 90 0 chr6 143065001 143065123 -6451914 - B1_Mur4 SINE Alu -2 148 16 1 1676 398 259 57 43 chr6 143065123 143065142 -6451895 - ID_B1 SINE B4 -2 222 80 1 1676 240 371 39 39 chr6 143065152 143065357 -6451680 + Cheshire DNA MER1_type 104 308 -2112 1 1676 409 283 124 0 chr6 143065352 143065497 -6451540 - RMER30 DNA MER1_type -28 174 12 1 1676 186 128 0 0 chr6 143065871 143065910 -6451127 + (G)n Simple_repeat Simple_repeat 1 39 0 1 1676 358 244 117 8 chr6 143066700 143066828 -6450209 + ORR1E LTR MaLR 8 149 -210 1 1676 615 27 0 0 chr6 143066984 143067057 -6449980 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 1 1676 780 172 11 6 chr6 143067079 143067254 -6449783 + GA-rich Low_complexity Low_complexity 3 178 0 1 1676 348 269 0 13 chr6 143067254 143067333 -6449704 + polypurine Low_complexity Low_complexity 3 80 0 1 1676 406 298 50 62 chr6 143067430 143067609 -6449428 - RMER30 DNA MER1_type -21 181 5 1 1676 377 229 2 48 chr6 143067644 143067762 -6449275 + PB1D7 SINE Alu 1 114 -6 1 1676 861 265 29 14 chr6 143068192 143068471 -6448566 + MLT2B2 LTR ERVL 1 283 -232 1 1676 446 216 83 35 chr6 143068551 143068695 -6448342 + RSINE1 SINE B4 2 152 -13 1 1676 270 116 0 0 chr6 143068940 143068983 -6448054 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1676 2209 105 42 0 chr6 143069284 143069597 -6447440 - ORR1A3 LTR MaLR 0 326 1 1 1676 449 204 71 0 chr6 143069748 143069846 -6447191 + RodERV21-int LTR ERV1 8 112 -4879 1 1676 1199 242 403 83 chr6 143069973 143070090 -6446947 + RodERV21-int LTR ERV1 579 739 -4252 1 1676 522 0 0 0 chr6 143070090 143070148 -6446889 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1676 1199 196 86 34 chr6 143070148 143070401 -6446636 + RodERV21-int LTR ERV1 740 999 -3992 1 1676 7910 65 11 7 chr6 143070634 143072320 -6444717 - L1Md_F2 LINE L1 0 6582 4890 1 1676 209 57 29 0 chr6 143072879 143072914 -6444123 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1676 1066 61 0 0 chr6 143072917 143073048 -6443989 - B1_Mus1 SINE Alu -16 132 2 1 1676 1320 86 23 0 chr6 143073615 143073790 -6443247 + B2_Mm2 SINE B2 3 181 -14 1 1676 770 123 0 16 chr6 143073817 143073941 -6443096 + B2_Mm2 SINE B2 2 123 -72 1 1676 328 222 12 12 chr6 143074029 143074111 -6442926 + MYSERV6-int LTR ERVK 896 977 -5160 1 1676 313 177 190 0 chr6 143074124 143074203 -6442834 + MYSERV6-int LTR ERVK 1537 1630 -3892 1 1676 375 264 109 112 chr6 143074297 143074591 -6442446 + MYSERV6-int LTR ERVK 1572 1864 -3658 1 1676 633 37 0 0 chr6 143074632 143074713 -6442324 + B2_Mm1t SINE B2 1 81 -112 1 1676 797 220 118 93 chr6 143075031 143075484 -6441553 + MYSERV6-int LTR ERVK 7977 8233 -726 1 1676 1144 70 0 0 chr6 143075484 143075627 -6441410 + B1_Mm SINE Alu 5 147 0 1 1676 797 265 89 133 chr6 143075627 143076071 -6440966 + MYSERV6-int LTR ERVK 8234 8683 -276 1 1676 1316 219 154 100 chr6 143076289 143076433 -6440604 + RLTR19-int LTR ERVK 3189 3386 -2751 1 1676 1311 95 39 0 chr6 143076433 143076612 -6440425 + B2_Mm2 SINE B2 1 186 -9 1 1676 1184 41 0 46 chr6 143076621 143076774 -6440263 + B1_Mus2 SINE Alu 1 146 -1 1 1676 249 57 0 0 chr6 143076778 143076813 -6440224 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1676 1316 227 138 88 chr6 143076813 143077828 -6439209 + RLTR19-int LTR ERVK 2607 3966 -2171 1 1676 4180 163 85 17 chr6 143078050 143078913 -6438124 + RMER21A LTR ERV1 21 941 -6 1 1676 2627 164 138 15 chr6 143079150 143079480 -6437557 - RMER6C LTR ERVK 0 690 337 1 1676 522 0 0 0 chr6 143079480 143079538 -6437499 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1676 2627 164 138 15 chr6 143079538 143079763 -6437274 - RMER6C LTR ERVK -354 336 58 1 1676 1703 155 88 26 chr6 143079763 143080060 -6436977 - RMER17C LTR ERVK -2 408 86 1 1676 480 35 0 0 chr6 143080060 143080118 -6436919 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1676 1703 155 88 26 chr6 143080118 143080204 -6436833 - RMER17C LTR ERVK -325 85 1 1 1676 2627 164 138 15 chr6 143080204 143080261 -6436776 - RMER6C LTR ERVK -633 57 1 1 1676 370 328 27 99 chr6 143080483 143080706 -6436331 + L2 LINE L2 2686 2892 -527 1 1676 240 317 54 56 chr6 143080712 143080914 -6436123 - MLT1C LTR MaLR -8 547 289 1 1676 433 259 183 12 chr6 143081021 143081185 -6435852 + B3A SINE B2 2 193 -5 1 1676 254 258 16 0 chr6 143081201 143081263 -6435774 - MLT1H2 LTR MaLR -377 112 50 1 1676 290 371 31 78 chr6 143081263 143081520 -6435517 + MER97c DNA MER1_type? 1 245 -845 1 1676 441 0 0 0 chr6 143081551 143081600 -6435437 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1676 267 288 46 86 chr6 143081935 143082087 -6434950 + MER97c DNA MER1_type? 892 1037 -53 1 1676 250 312 25 12 chr6 143082303 143082384 -6434653 + RSINE1 SINE B4 84 165 0 1 1676 429 141 0 0 chr6 143082385 143082456 -6434581 + (ATG)n Simple_repeat Simple_repeat 2 72 0 1 1676 1055 192 5 27 chr6 143082537 143082757 -6434280 + B3 SINE B2 1 215 -1 1 1676 204 97 0 0 chr6 143082799 143082830 -6434207 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 1 1676 312 91 0 0 chr6 143083042 143083086 -6433951 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 1 1676 189 26 25 50 chr6 143083169 143083209 -6433828 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1676 1177 43 0 0 chr6 143083209 143083348 -6433689 - B1_Mus1 SINE Alu -9 139 1 1 1676 255 255 82 55 chr6 143083353 143083573 -6433464 + L1M6 LINE L1 1173 1398 -5098 1 1676 767 282 70 52 chr6 143084132 143084526 -6432511 - MLT1C LTR MaLR -36 431 11 1 1676 372 286 82 104 chr6 143084647 143084975 -6432062 - MLT2B3 LTR ERVL -70 484 164 1 1676 216 0 0 0 chr6 143085085 143085109 -6431928 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1676 1023 70 0 0 chr6 143085129 143085257 -6431780 + B1_Mus2 SINE Alu 2 129 -18 1 1676 1853 169 72 159 chr6 143085318 143085383 -6431654 + RLTR18B LTR ERVK 4 67 -445 1 1676 366 91 0 0 chr6 143085383 143085438 -6431599 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1676 1853 169 72 159 chr6 143085438 143085930 -6431107 + RLTR18B LTR ERVK 68 512 0 1 1676 376 297 0 0 chr6 143085944 143086035 -6431002 - B1F1 SINE Alu -58 91 1 1 1676 276 254 42 0 chr6 143086219 143086290 -6430747 - ID4_ SINE ID -9 74 1 1 1676 275 255 199 45 chr6 143086443 143086644 -6430393 + BLACKJACK DNA AcHobo 970 1201 -1743 1 1676 501 294 9 127 chr6 143086775 143086870 -6430167 + ID_B1 SINE B4 11 193 -99 1 1676 619 227 7 50 chr6 143086870 143087009 -6430028 + B1_Mur2 SINE Alu 9 141 -8 1 1676 501 294 9 127 chr6 143087009 143087034 -6430003 + ID_B1 SINE B4 194 245 -47 1 1676 902 155 16 14 chr6 143087034 143087693 -6429344 + GA-rich Low_complexity Low_complexity 1 659 0 1 1676 752 194 40 40 chr6 143087763 143087913 -6429124 - B1_Mur4 SINE Alu 0 150 1 1 1676 680 150 82 16 chr6 143088938 143089060 -6427977 + B1_Mur2 SINE Alu 1 130 -19 1 1676 360 0 0 0 chr6 143089060 143089100 -6427937 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 1 1676 237 290 167 20 chr6 143089312 143089414 -6427623 + PB1D10 SINE Alu 1 117 0 1 1676 473 183 0 41 chr6 143089827 143089924 -6427113 + B1_Mus1 SINE Alu 3 95 -53 1 1676 351 0 0 0 chr6 143089924 143089963 -6427074 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1676 386 20 20 0 chr6 143089963 143090013 -6427024 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1676 243 0 0 0 chr6 143090013 143090039 -6426998 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1676 654 234 22 0 chr6 143090069 143090206 -6426831 + B1_Mur1 SINE Alu 5 144 -5 1 1676 204 105 0 0 chr6 143090212 143090238 -6426799 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 1 1676 1221 48 0 0 chr6 143090238 143090385 -6426652 - B1_Mm SINE Alu 0 147 1 1 1676 204 105 0 0 chr6 143090385 143090396 -6426641 + (TTTTG)n Simple_repeat Simple_repeat 3 13 0 1 1676 1201 55 0 7 chr6 143090419 143090567 -6426470 + B1_Mm SINE Alu 1 147 0 2 1676 216 0 0 0 chr6 143090567 143090591 -6426446 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1676 189 0 0 0 chr6 143090592 143090613 -6426424 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2 1676 25 0 0 0 chr6 143091142 143091167 -6425870 + AT_rich Low_complexity Low_complexity 1 25 0 2 1676 317 236 34 0 chr6 143091249 143091338 -6425699 + PB1D7 SINE Alu 1 92 -28 2 1676 392 323 15 29 chr6 143091500 143091637 -6425400 + ID_B1 SINE B4 90 224 0 2 1676 1252 47 0 0 chr6 143091661 143091809 -6425228 + B1_Mus1 SINE Alu 1 148 0 2 1676 222 319 14 0 chr6 143091965 143092034 -6425003 - ID4_ SINE ID -2 81 12 2 1676 466 263 15 0 chr6 143092324 143092457 -6424580 + RMER13A LTR ERVK 726 860 0 2 1676 377 283 0 42 chr6 143092911 143093029 -6424008 + B1F1 SINE Alu 35 147 -2 2 1676 543 228 53 33 chr6 143093404 143093554 -6423483 + B3A SINE B2 2 154 -44 2 1676 198 71 0 0 chr6 143093554 143093582 -6423455 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1676 298 238 78 89 chr6 143093582 143093611 -6423426 + B2_Mm1t SINE B2 150 178 -15 2 1676 479 173 9 0 chr6 143094176 143094286 -6422751 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 1676 451 141 22 0 chr6 143094539 143094631 -6422406 + GA-rich Low_complexity Low_complexity 2 95 0 2 1676 943 63 0 0 chr6 143094705 143094832 -6422205 + B1_Mus1 SINE Alu 1 127 -21 2 1676 497 222 65 0 chr6 143095927 143096035 -6421002 + PB1D9 SINE Alu 5 119 -1 2 1676 2069 138 72 0 chr6 143096054 143096415 -6420622 - ORR1B1 LTR MaLR -7 387 1 2 1676 500 261 69 0 chr6 143096430 143096560 -6420477 - ID_B1 SINE B4 -5 219 81 2 1676 21 57 0 0 chr6 143096595 143096630 -6420407 + AT_rich Low_complexity Low_complexity 1 35 0 2 1676 260 26 77 0 chr6 143096662 143096701 -6420336 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 2 1676 520 56 0 0 chr6 143096701 143096773 -6420264 - B1_Mm SINE Alu 0 147 76 2 1676 260 279 52 31 chr6 143096916 143097012 -6420025 + B1F SINE Alu 1 98 -51 2 1676 428 252 27 27 chr6 143097017 143097127 -6419910 + ID_B1 SINE B4 115 224 0 2 1676 1259 35 0 0 chr6 143097129 143097274 -6419763 + B1_Mm SINE Alu 1 145 -2 2 1676 210 191 0 0 chr6 143097275 143097317 -6419720 + A-rich Low_complexity Low_complexity 1 42 0 2 1676 364 290 59 20 chr6 143097395 143097497 -6419540 + B1F2 SINE Alu 11 116 -33 2 1676 671 230 0 45 chr6 143097805 143097960 -6419077 + B1_Mur4 SINE Alu 3 150 0 2 1676 214 115 19 19 chr6 143098585 143098638 -6418399 + (CCTG)n Simple_repeat Simple_repeat 4 56 0 2 1676 539 248 0 0 chr6 143099357 143099474 -6417563 - B1F SINE Alu -32 117 1 2 1676 270 250 0 0 chr6 143099539 143099595 -6417442 + B1_Mur4 SINE Alu 1 56 -94 2 1676 453 19 0 0 chr6 143099621 143099675 -6417362 + (CTAA)n Simple_repeat Simple_repeat 3 56 0 2 1676 261 0 0 0 chr6 143099705 143099734 -6417303 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1676 504 161 0 0 chr6 143099792 143099808 -6417229 + A-rich Low_complexity Low_complexity 1 16 0 2 1676 1211 54 0 0 chr6 143099808 143099955 -6417082 + B1_Mus2 SINE Alu 1 147 0 2 1676 504 161 0 0 chr6 143099955 143100031 -6417006 + A-rich Low_complexity Low_complexity 17 92 0 2 1676 1155 74 0 0 chr6 143100434 143100582 -6416455 - B1_Mus1 SINE Alu 0 148 1 2 1676 310 16 79 16 chr6 143100587 143100650 -6416387 + (TTTTG)n Simple_repeat Simple_repeat 1 67 0 2 1676 193 215 136 15 chr6 143101588 143101654 -6415383 - L2a LINE L2 -17 3409 3336 2 1676 284 269 21 0 chr6 143101724 143101817 -6415220 - BC1_Mm scRNA scRNA -39 113 19 2 1676 234 128 0 0 chr6 143102029 143102068 -6414969 + (TAA)n Simple_repeat Simple_repeat 1 39 0 2 1676 419 279 72 0 chr6 143102771 143102882 -6414155 + RSINE1 SINE B4 3 121 -44 2 1676 467 74 0 14 chr6 143102886 143102955 -6414082 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1676 242 300 14 14 chr6 143103046 143103117 -6413920 - PB1 SINE Alu 0 127 57 2 1676 275 306 151 23 chr6 143103637 143103895 -6413142 + L1M3 LINE L1 2628 2918 -3222 2 1676 220 191 159 0 chr6 143104131 143104194 -6412843 + B3A SINE B2 3 75 -123 2 1676 445 216 58 10 chr6 143104191 143104294 -6412743 + RSINE1 SINE B4 54 161 -4 2 1676 551 40 0 13 chr6 143104315 143104390 -6412647 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1676 207 0 0 0 chr6 143104521 143104544 -6412493 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1676 282 277 28 65 chr6 143104667 143104775 -6412262 - PB1D10 SINE Alu -10 107 4 2 1676 588 261 30 48 chr6 143104775 143104862 -6412175 - ID SINE ID -140 84 1 2 1676 266 0 29 0 chr6 143104917 143104951 -6412086 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1676 1247 42 0 0 chr6 143104951 143105095 -6411942 - B1_Mus2 SINE Alu -2 145 2 2 1676 507 77 0 37 chr6 143105135 143105216 -6411821 - B1_Mur4 SINE Alu 0 150 73 2 1676 24 0 0 0 chr6 143105223 143105247 -6411790 + AT_rich Low_complexity Low_complexity 1 24 0 2 1676 512 280 8 0 chr6 143105353 143105478 -6411559 - B1_Mur3 SINE Alu -22 127 2 2 1676 180 77 0 0 chr6 143105604 143105630 -6411407 + (CAA)n Simple_repeat Simple_repeat 1 26 0 2 1676 1247 251 56 114 chr6 143105630 143106165 -6410872 - RMER5 LTR ERV1 -19 515 12 2 1676 681 292 56 14 chr6 143107238 143107453 -6409584 + ID_B1 SINE B4 1 224 0 2 1676 550 206 80 14 chr6 143107459 143107597 -6409440 + B1F1 SINE Alu 1 147 -2 2 1676 22 0 0 0 chr6 143108501 143108523 -6408514 + AT_rich Low_complexity Low_complexity 1 22 0 2 1676 311 259 44 11 chr6 143108560 143108650 -6408387 + B1F SINE Alu 19 111 -38 2 1676 253 204 0 0 chr6 143108789 143108838 -6408199 + ID4 SINE ID 2 50 -33 2 1676 200 34 0 33 chr6 143109808 143109838 -6407199 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1676 1293 7 0 0 chr6 143109838 143109982 -6407055 - B1_Mm SINE Alu -3 144 1 2 1676 280 167 137 79 chr6 143109992 143110155 -6406882 + RLTR13D3 LTR ERVK 849 1114 0 2 1676 930 200 52 28 chr6 143110221 143110432 -6406605 + B3 SINE B2 1 216 0 2 1676 246 105 0 0 chr6 143110975 143111013 -6406024 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1676 378 0 0 0 chr6 143111342 143111384 -6405653 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1676 501 17 0 0 chr6 143111384 143111442 -6405595 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1676 665 24 12 0 chr6 143111579 143111662 -6405375 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 2 1676 533 121 70 10 chr6 143111662 143111762 -6405275 - B1_Mur2 SINE Alu -13 136 31 2 1676 382 298 44 0 chr6 143112190 143112304 -6404733 + RSINE1 SINE B4 2 120 -45 2 1676 330 132 0 0 chr6 143112456 143112509 -6404528 + (CCA)n Simple_repeat Simple_repeat 3 55 0 2 1676 196 365 27 0 chr6 143112922 143112996 -6404041 - L2a LINE L2 -49 3377 3302 2 1676 254 261 159 21 chr6 143113116 143113261 -6403776 - L1MC LINE L1 -832 5512 5348 2 1676 1256 20 0 0 chr6 143113334 143113480 -6403557 - B1_Mm SINE Alu 0 147 2 2 1676 531 260 16 16 chr6 143113482 143113607 -6403430 + B1_Mur1 SINE Alu 16 140 -9 2 1676 364 170 4 26 chr6 143113645 143113722 -6403315 + B1_Mur4 SINE Alu 11 88 -62 2 1676 240 35 0 0 chr6 143113778 143113807 -6403230 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1676 26 0 0 0 chr6 143113903 143113929 -6403108 + AT_rich Low_complexity Low_complexity 1 26 0 2 1676 384 59 0 0 chr6 143114093 143114144 -6402893 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1676 234 0 0 0 chr6 143114180 143114206 -6402831 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1676 1154 48 14 7 chr6 143114206 143114353 -6402684 - B1_Mus1 SINE Alu 0 148 1 2 1676 477 214 61 18 chr6 143114919 143115033 -6402004 - B1F SINE Alu -25 124 6 2 1676 218 213 0 0 chr6 143115947 143115994 -6401043 + (TCG)n Simple_repeat Simple_repeat 2 48 0 2 1676 370 239 39 9 chr6 143118055 143118171 -6398866 - B1_Mur1 SINE Alu 0 149 1 2 1676 327 175 0 31 chr6 143118481 143118546 -6398491 + ID_B1 SINE B4 126 188 -36 2 1676 486 0 0 0 chr6 143119025 143119079 -6397958 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 1676 324 0 0 0 chr6 143119079 143119114 -6397923 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1676 383 248 28 28 chr6 143120007 143120115 -6396922 - PB1D7 SINE Alu -1 119 12 2 1676 359 89 18 0 chr6 143120147 143120203 -6396834 + (TTCCC)n Simple_repeat Simple_repeat 4 60 0 2 1676 645 213 51 7 chr6 143120203 143120340 -6396697 - B1_Mus1 SINE Alu -5 143 1 2 1676 259 306 20 20 chr6 143120342 143120442 -6396595 + MIR SINE MIR 94 193 -69 2 1676 1253 27 7 0 chr6 143121183 143121329 -6395708 - B1_Mm SINE Alu 0 147 1 2 1676 372 156 266 0 chr6 143121336 143121445 -6395592 - B1_Mus1 SINE Alu -3 145 8 2 1676 611 165 70 63 chr6 143121806 143121948 -6395089 + B1_Mus1 SINE Alu 1 143 -5 2 1676 1184 179 50 53 chr6 143122279 143122680 -6394357 - RLTR18B LTR ERVK -158 354 1 2 1676 363 193 291 7 chr6 143122794 143122945 -6394092 - B3 SINE B2 -6 210 17 2 1676 288 0 0 0 chr6 143123119 143123151 -6393886 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1676 1121 88 0 0 chr6 143123204 143123351 -6393686 + B1_Mus1 SINE Alu 2 148 0 3 1676 276 91 0 0 chr6 143123384 143123428 -6393609 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 3 1676 295 266 59 94 chr6 143123431 143123601 -6393436 + B4 SINE B4 2 165 -127 3 1676 322 298 9 46 chr6 143123781 143123890 -6393147 + PB1D10 SINE Alu 8 112 -5 3 1676 321 200 26 26 chr6 143124062 143124139 -6392898 + B1_Mm SINE Alu 55 131 -16 3 1676 278 266 16 6 chr6 143124142 143124244 -6392793 - B1_Mur2 SINE Alu -26 123 19 3 1676 287 309 118 26 chr6 143124460 143124613 -6392424 - MLT2C1 LTR ERVL -91 306 140 3 1676 284 120 20 0 chr6 143124933 143124983 -6392054 + (CATA)n Simple_repeat Simple_repeat 3 53 0 3 1676 324 234 0 0 chr6 143125022 143125086 -6391951 - B1F SINE Alu -19 130 67 3 1676 284 259 157 0 chr6 143125887 143125995 -6391042 - MER2 DNA MER2_type -209 136 12 3 1676 1079 169 54 0 chr6 143126080 143126264 -6390773 + B3 SINE B2 3 196 -20 3 1676 366 276 81 0 chr6 143126291 143126414 -6390623 + ID_B1 SINE B4 82 214 -10 3 1676 201 39 0 0 chr6 143127004 143127030 -6390007 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1676 271 226 133 114 chr6 143128418 143128523 -6388514 - B1F SINE Alu -10 107 1 3 1676 21 0 0 0 chr6 143128623 143128644 -6388393 + GC_rich Low_complexity Low_complexity 1 21 0 3 1676 24 0 0 0 chr6 143129416 143129440 -6387597 + AT_rich Low_complexity Low_complexity 1 24 0 3 1676 226 276 0 17 chr6 143129463 143129522 -6387515 + G-rich Low_complexity Low_complexity 3 60 0 3 1676 195 169 28 14 chr6 143129530 143129602 -6387435 + GA-rich Low_complexity Low_complexity 1 73 0 3 1676 377 308 31 31 chr6 143129604 143129765 -6387272 - RSINE1 SINE B4 0 165 5 3 1676 1094 90 0 0 chr6 143129786 143129931 -6387106 - B1_Mus2 SINE Alu 0 147 3 3 1676 1220 48 0 0 chr6 143129974 143130120 -6386917 + B1_Mus2 SINE Alu 2 147 0 3 1676 321 151 96 0 chr6 143130159 143130232 -6386805 + ID_B1 SINE B4 133 212 -12 3 209 554 206 65 14 chr6 143130575 143130713 -6386324 - ID_B1 SINE B4 0 224 80 3 1677 318 203 0 28 chr6 143130711 143130797 -6386240 - B1_Mur1 SINE Alu -1 148 63 3 1677 189 0 0 0 chr6 143131052 143131073 -6385964 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1677 208 179 0 0 chr6 143131217 143131256 -6385781 + MIR SINE MIR 116 154 -108 3 1677 225 0 0 0 chr6 143131812 143131837 -6385200 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1677 532 253 84 46 chr6 143131850 143132111 -6384926 + B4A SINE B4 4 274 -18 3 1677 345 242 20 40 chr6 143132198 143132297 -6384740 + PB1 SINE Alu 14 110 -17 3 1677 274 173 126 69 chr6 143132395 143132482 -6384555 + ID_B1 SINE B4 128 219 -5 3 1677 634 50 550 8 chr6 143134364 143134463 -6382574 + B2_Mm1t SINE B2 1 160 -33 3 1677 243 0 0 0 chr6 143134463 143134490 -6382547 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 1677 634 50 550 8 chr6 143134490 143134510 -6382527 + B2_Mm1t SINE B2 161 185 -8 3 1677 21 0 0 0 chr6 143134516 143134537 -6382500 + AT_rich Low_complexity Low_complexity 1 21 0 3 1677 565 143 0 0 chr6 143135016 143135107 -6381930 + RLTR42-int LTR ERVK 3016 3106 -2416 3 1677 231 103 86 29 chr6 143135284 143135354 -6381683 - Lx9 LINE L1 -113 7531 7458 3 1677 320 178 0 14 chr6 143135444 143135518 -6381519 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 1677 22 0 0 0 chr6 143136043 143136065 -6380972 + AT_rich Low_complexity Low_complexity 1 22 0 3 1677 409 165 273 9 chr6 143137284 143137394 -6379643 + B1_Mur2 SINE Alu 1 139 -10 3 1677 385 233 0 0 chr6 143137898 143137984 -6379053 + PB1D9 SINE Alu 5 90 -30 3 1677 183 100 0 0 chr6 143138166 143138196 -6378841 + (TAAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1677 366 291 41 112 chr6 143138861 143139031 -6378006 + ID_B1 SINE B4 10 167 -57 3 1677 579 265 7 13 chr6 143139825 143139974 -6377063 + B1_Mur2 SINE Alu 1 148 -1 3 1677 216 0 0 0 chr6 143143123 143143147 -6373890 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1677 1197 48 7 0 chr6 143144498 143144645 -6372392 - B1_Mus1 SINE Alu 0 148 1 3 1677 225 128 0 0 chr6 143144952 143144999 -6372038 + (T)n Simple_repeat Simple_repeat 1 47 0 3 1677 1153 68 0 0 chr6 143145000 143145146 -6371891 - B1_Mus2 SINE Alu 0 147 2 3 1677 352 208 13 0 chr6 143145515 143145592 -6371445 + RMER1C Other Other 1250 1327 -15 3 1677 701 79 0 0 chr6 143145943 143146032 -6371005 + RLTR42-int LTR ERVK 3118 3206 -2316 3 1677 313 312 78 8 chr6 143146876 143147005 -6370032 + B1_Mur1 SINE Alu 11 148 -1 3 1677 554 281 70 77 chr6 143147336 143147621 -6369416 + B4A SINE B4 10 292 0 3 1677 405 0 0 0 chr6 143147738 143147783 -6369254 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1677 452 294 24 0 chr6 143147785 143147911 -6369126 - RSINE1 SINE B4 -32 133 5 3 1677 547 154 0 0 chr6 143148368 143148459 -6368578 - ORR1B1 LTR MaLR -303 91 1 3 1677 338 179 10 31 chr6 143148653 143148751 -6368286 + C-rich Low_complexity Low_complexity 1 96 0 3 1677 280 321 95 0 chr6 143148756 143148840 -6368197 - B1F SINE Alu -22 127 36 3 1677 425 270 125 30 chr6 143148884 143149052 -6367985 - B3 SINE B2 -6 210 27 3 1677 492 161 32 0 chr6 143149069 143149162 -6367875 - B1_Mur4 SINE Alu 0 150 55 3 1677 453 281 109 34 chr6 143149386 143149843 -6367194 - L1MA5A LINE L1 -372 5928 5398 3 1677 303 305 43 49 chr6 143149942 143150104 -6366933 - RSINE1 SINE B4 0 165 5 3 1677 823 216 0 51 chr6 143150251 143150427 -6366610 - B3 SINE B2 -14 202 36 3 1677 22 35 0 0 chr6 143150440 143150469 -6366568 + AT_rich Low_complexity Low_complexity 1 29 0 3 1677 1285 35 142 0 chr6 143150525 143150543 -6366494 - B2_Mm1a SINE B2 0 193 176 3 1677 207 0 0 0 chr6 143150543 143150566 -6366471 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 1677 1285 35 142 0 chr6 143150566 143150716 -6366321 - B2_Mm1a SINE B2 -18 175 2 3 1677 414 39 0 0 chr6 143150946 143150998 -6366039 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 1677 419 252 106 8 chr6 143151045 143151177 -6365860 + B3 SINE B2 66 210 -6 3 1677 4502 104 25 106 chr6 143152006 143152881 -6364156 + RLTR42-int LTR ERVK 3200 4003 -1519 3 1677 273 91 200 0 chr6 143152862 143152917 -6364120 + RLTR42-int LTR ERVK 2946 3011 -2511 3 1677 246 219 139 47 chr6 143157139 143157225 -6359812 + BC1_Mm scRNA scRNA 2 95 -57 3 1677 260 331 78 19 chr6 143157277 143157431 -6359606 + B4A SINE B4 34 196 -96 3 1677 382 201 15 61 chr6 143157398 143157515 -6359522 - PB1D9 SINE Alu -34 115 1 3 1677 348 296 118 14 chr6 143157515 143157655 -6359382 - ORR1E LTR MaLR -147 212 58 3 1677 1185 48 7 0 chr6 143158080 143158227 -6358810 + B1_Mus1 SINE Alu 1 148 0 3 1677 249 259 37 0 chr6 143158823 143158904 -6358133 + ORR1C1 LTR MaLR 268 351 -19 3 1677 649 209 47 0 chr6 143158991 143159120 -6357917 - B1_Mur2 SINE Alu -14 135 1 3 1677 1111 226 166 3 chr6 143159405 143159725 -6357312 - MTE2b LTR MaLR 0 379 8 3 1677 301 257 9 9 chr6 143160650 143160760 -6356277 + CT-rich Low_complexity Low_complexity 3 112 0 3 1677 645 165 0 65 chr6 143160762 143160885 -6356152 - B1_Mur2 SINE Alu -34 115 1 3 1677 369 280 0 0 chr6 143160898 143160973 -6356064 - ID4 SINE ID -7 76 2 3 1677 594 108 45 9 chr6 143161147 143161259 -6355778 + ORR1C1 LTR MaLR 1 116 -262 3 1677 799 203 60 19 chr6 143161256 143161472 -6355565 + ORR1C1-int LTR MaLR 385 609 -900 3 1677 1022 133 25 5 chr6 143161469 143161665 -6355372 + ORR1C1-int LTR MaLR 757 956 -553 3 1677 1450 157 100 116 chr6 143161657 143161906 -6355131 + RLTR28 LTR ERVL 30 288 -236 3 1677 1191 48 7 0 chr6 143161906 143162052 -6354985 - B1_Mus2 SINE Alu 0 147 1 3 1677 1450 157 100 116 chr6 143162052 143162241 -6354796 + RLTR28 LTR ERVL 289 461 -63 3 1677 468 0 0 0 chr6 143162241 143162293 -6354744 + (T)n Simple_repeat Simple_repeat 1 52 0 3 1677 2004 175 75 82 chr6 143162344 143162700 -6354337 + ORR1C1-int LTR MaLR 965 1322 -187 3 1677 753 189 30 0 chr6 143162700 143162832 -6354205 - B1_Mur4 SINE Alu -12 138 3 3 1677 2004 175 75 82 chr6 143162832 143162983 -6354054 + ORR1C1-int LTR MaLR 1323 1474 -35 3 1677 3536 95 89 19 chr6 143162983 143163510 -6353527 + LTRIS2 LTR ERV1 1 564 0 3 1677 2004 175 75 82 chr6 143163510 143163548 -6353489 + ORR1C1-int LTR MaLR 1475 1507 -2 3 1677 2053 157 8 26 chr6 143163543 143163928 -6353109 + ORR1C1 LTR MaLR 1 378 0 3 1677 793 213 24 53 chr6 143163928 143164136 -6352901 - B3 SINE B2 -14 202 1 3 1677 1089 69 7 14 chr6 143164234 143164381 -6352656 - B1_Mus2 SINE Alu -1 146 1 3 1677 536 292 8 0 chr6 143164427 143164557 -6352480 + ID_B1 SINE B4 11 141 -83 3 1677 637 259 14 0 chr6 143164597 143164740 -6352297 + RSINE1 SINE B4 3 147 -18 3 1677 848 194 97 126 chr6 143165784 143166156 -6350881 + RLTR9A LTR ERVK 1 361 -7 3 1677 396 240 76 33 chr6 143166155 143166298 -6350739 - B3A SINE B2 -52 164 1 3 1677 1144 49 0 14 chr6 143166329 143166473 -6350564 + B1_Mm SINE Alu 1 142 -5 3 1677 228 306 0 16 chr6 143166510 143166573 -6350464 + CT-rich Low_complexity Low_complexity 2 63 0 3 1677 390 316 0 42 chr6 143166836 143166978 -6350059 - ID_B1 SINE B4 -7 217 82 3 1677 741 153 12 8 chr6 143167067 143167332 -6349705 + (TG)n Simple_repeat Simple_repeat 1 266 0 3 1677 637 246 44 34 chr6 143167434 143167640 -6349397 - RMER5 LTR ERV1 -272 262 55 3 1677 198 71 0 0 chr6 143168187 143168215 -6348822 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1677 297 0 0 0 chr6 143168678 143168711 -6348326 + (TTA)n Simple_repeat Simple_repeat 2 34 0 3 1677 395 223 10 68 chr6 143168711 143168820 -6348217 - B1F1 SINE Alu -12 108 6 3 1677 31 44 0 0 chr6 143168824 143168869 -6348168 + AT_rich Low_complexity Low_complexity 1 45 0 3 1677 383 331 71 22 chr6 143168898 143169080 -6347957 - Lx8 LINE L1 -68 7405 7215 3 1677 1297 97 11 0 chr6 143171986 143172162 -6344875 + B2_Mm1t SINE B2 2 179 -14 3 1677 346 127 0 0 chr6 143172213 143172268 -6344769 + B2_Mm2 SINE B2 47 101 -94 4 1677 710 262 89 5 chr6 143172319 143172522 -6344515 + B4A SINE B4 2 221 -71 4 1677 578 245 0 28 chr6 143173423 143173566 -6343471 + ID_B1 SINE B4 82 220 -4 4 1677 195 100 0 0 chr6 143174033 143174063 -6342974 + (TTA)n Simple_repeat Simple_repeat 2 31 0 4 1677 410 224 253 38 chr6 143174076 143174234 -6342803 - B3A SINE B2 -5 193 2 4 1677 212 250 0 0 chr6 143174248 143174296 -6342741 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 4 1677 872 172 64 25 chr6 143174420 143174623 -6342414 - B3 SINE B2 -4 212 2 4 1677 492 295 65 44 chr6 143174674 143174719 -6342318 - L1M5 LINE L1 -571 5669 5626 4 1677 1174 259 30 76 chr6 143174719 143175030 -6342007 - MTE2b LTR MaLR 0 379 75 4 1677 574 284 87 10 chr6 143175030 143175226 -6341811 + B3 SINE B2 2 212 -4 4 1677 1174 259 30 76 chr6 143175226 143175311 -6341726 - MTE2b LTR MaLR -305 74 1 4 1677 492 295 65 44 chr6 143175311 143175513 -6341524 - L1M5 LINE L1 -615 5625 5417 4 1677 1132 104 0 98 chr6 143175735 143175949 -6341088 - B2_Mm2 SINE B2 -2 193 1 4 1677 307 218 54 18 chr6 143175952 143176064 -6340973 - L1M5 LINE L1 -947 5199 5084 4 1677 320 185 30 30 chr6 143176123 143176190 -6340847 - ID4_ SINE ID -15 68 2 4 1677 282 281 11 53 chr6 143176300 143176394 -6340643 + MT2B LTR ERVL 175 264 -337 4 1677 716 72 0 0 chr6 143176330 143176427 -6340610 + B1_Mus2 SINE Alu 49 145 -2 4 1677 886 240 55 0 chr6 143176999 143177199 -6339838 - B3 SINE B2 -5 211 1 4 1677 201 264 0 19 chr6 143177212 143177266 -6339771 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1677 519 263 28 60 chr6 143177271 143177453 -6339584 - B4A SINE B4 -2 290 115 4 1677 213 196 0 0 chr6 143177998 143178054 -6338983 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1677 351 296 0 123 chr6 143178695 143178849 -6338188 + B1F SINE Alu 1 135 -14 4 1677 499 240 16 31 chr6 143179480 143179609 -6337428 + B4 SINE B4 39 165 -127 4 1677 371 295 131 0 chr6 143179823 143179945 -6337092 - RSINE1 SINE B4 -27 138 1 4 1677 765 180 122 27 chr6 143181311 143181499 -6335538 - B3 SINE B2 -1 215 10 4 1677 323 238 24 0 chr6 143181676 143181760 -6335277 - Tigger5 DNA MER2_type -4 2402 2317 4 1677 341 284 60 39 chr6 143182376 143182610 -6334427 + L1ME1 LINE L1 5860 6098 -81 4 1677 21 0 0 0 chr6 143182715 143182736 -6334301 + AT_rich Low_complexity Low_complexity 1 21 0 4 1677 40 49 0 0 chr6 143182932 143182993 -6334044 + AT_rich Low_complexity Low_complexity 1 61 0 4 1677 515 301 65 5 chr6 143183010 143183210 -6333827 - ID_B1 SINE B4 -7 217 6 4 1677 284 324 55 18 chr6 143184115 143184225 -6332812 - MER63B DNA AcHobo -9 427 314 4 1677 185 83 0 27 chr6 143184672 143184709 -6332328 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1677 1117 67 0 0 chr6 143186216 143186351 -6330686 + B1_Mus2 SINE Alu 1 135 -12 4 1677 513 281 77 70 chr6 143186665 143186952 -6330085 - B4A SINE B4 0 292 4 4 1677 258 268 0 0 chr6 143187019 143187075 -6329962 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 4 1677 261 0 0 0 chr6 143187978 143188007 -6329030 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1677 449 319 0 30 chr6 143189180 143189348 -6327689 - RSINE1 SINE B4 0 165 3 4 1677 537 285 48 143 chr6 143189404 143189781 -6327256 + MTEa LTR MaLR 13 353 -26 4 1677 609 14 0 0 chr6 143190074 143190144 -6326893 + (GA)n Simple_repeat Simple_repeat 2 71 0 4 1677 279 0 0 0 chr6 143190203 143190234 -6326803 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1677 23 0 0 0 chr6 143190354 143190377 -6326660 + AT_rich Low_complexity Low_complexity 1 23 0 4 1677 2141 46 31 0 chr6 143190420 143190681 -6326356 - L1Md_F3 LINE L1 0 6584 6316 4 1677 501 282 56 14 chr6 143190937 143191081 -6325956 + B3A SINE B2 2 151 -47 4 1677 302 343 18 9 chr6 143191867 143191976 -6325061 - AmnSINE1 SINE SINE -207 368 259 4 1677 23 0 0 0 chr6 143192797 143192820 -6324217 + AT_rich Low_complexity Low_complexity 1 23 0 4 1677 892 252 58 62 chr6 143192939 143193248 -6323789 - MTEb LTR MaLR -27 352 45 4 1677 407 271 97 8 chr6 143193910 143194044 -6322993 - B3 SINE B2 -13 203 58 4 1677 557 223 28 21 chr6 143194608 143194750 -6322287 - B1F1 SINE Alu -3 146 4 4 1677 469 186 0 0 chr6 143194938 143195049 -6321988 + ORR1A2 LTR MaLR 1 111 -235 4 1677 6988 102 24 9 chr6 143195050 143196085 -6320952 + Lx LINE L1 5546 6596 -58 4 1677 403 235 216 43 chr6 143196600 143196637 -6320400 - B4A SINE B4 -19 273 237 4 1677 201 39 0 0 chr6 143196637 143196663 -6320374 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 1677 403 235 216 43 chr6 143196663 143196856 -6320181 - B4A SINE B4 -56 236 5 4 1677 644 269 84 99 chr6 143196908 143197251 -6319786 + ORR1E LTR MaLR 22 359 0 4 1677 287 252 19 39 chr6 143198311 143198414 -6318623 - LTR37B LTR ERV1 -367 101 1 4 1677 487 220 34 96 chr6 143198442 143198588 -6318449 - B1F SINE Alu -6 143 7 4 1677 1103 212 5 19 chr6 143198823 143199039 -6317998 + B3 SINE B2 3 215 -1 4 1677 630 266 90 7 chr6 143199057 143199212 -6317825 + B3A SINE B2 5 172 -26 4 1677 826 73 61 0 chr6 143199568 143199733 -6317304 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 4 1677 557 213 53 38 chr6 143199735 143199867 -6317170 - RSINE1 SINE B4 -29 136 3 4 1677 297 279 0 12 chr6 143200534 143200614 -6316423 + PB1 SINE Alu 13 91 -36 4 1677 255 57 0 0 chr6 143200617 143200652 -6316385 + ORR1D1 LTR MaLR 1 35 -339 4 1677 3558 32 0 171 chr6 143200916 143201489 -6315548 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1677 588 223 33 0 chr6 143201731 143201852 -6315185 + B3A SINE B2 18 142 -56 4 1677 1853 116 6 16 chr6 143201855 143202178 -6314859 - RLTR11B LTR ERVK 0 453 134 4 1677 1338 74 16 0 chr6 143202171 143202361 -6314676 - B2_Mm2 SINE B2 -1 194 2 4 1677 715 179 75 25 chr6 143202361 143202508 -6314529 - RLTR11B LTR ERVK -298 155 1 4 1677 765 168 0 0 chr6 143202542 143202721 -6314316 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1677 22 56 0 0 chr6 143202726 143202762 -6314275 + AT_rich Low_complexity Low_complexity 1 36 0 4 1677 227 247 96 24 chr6 143203389 143203472 -6313565 + MLT1F1 LTR MaLR 181 269 -300 4 1677 330 319 58 0 chr6 143203538 143203676 -6313361 + MLT1F1 LTR MaLR 410 555 -14 4 1677 438 273 44 29 chr6 143203694 143203830 -6313207 - ID_B1 SINE B4 -25 199 62 4 1677 515 213 64 29 chr6 143203868 143204008 -6313029 - B1F SINE Alu 0 149 5 4 1677 283 280 0 0 chr6 143204485 143204560 -6312477 - B3 SINE B2 -140 76 2 4 1677 342 0 0 0 chr6 143204712 143204750 -6312287 + (TTA)n Simple_repeat Simple_repeat 2 39 0 4 1677 652 243 19 26 chr6 143204762 143204918 -6312119 - B3 SINE B2 -60 156 2 4 1677 638 234 14 7 chr6 143205073 143205211 -6311826 - B1_Mus2 SINE Alu -8 139 1 4 1677 220 322 80 11 chr6 143205388 143205476 -6311561 - PB1D10 SINE Alu -18 99 6 4 1677 338 261 32 73 chr6 143206850 143206974 -6310063 - PB1D7 SINE Alu 0 120 2 4 1677 21 0 0 0 chr6 143209737 143209758 -6307279 + AT_rich Low_complexity Low_complexity 1 21 0 4 1677 322 282 88 26 chr6 143210517 143210630 -6306407 + RSINE1 SINE B4 2 121 -44 4 1677 1081 110 0 0 chr6 143210792 143210937 -6306100 + B1_Mus1 SINE Alu 1 145 -3 4 1677 290 229 28 28 chr6 143211197 143211269 -6305768 - ID_B1 SINE B4 -7 217 146 4 1677 261 0 0 0 chr6 143211270 143211299 -6305738 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1677 24 32 0 0 chr6 143211821 143211852 -6305185 + AT_rich Low_complexity Low_complexity 1 31 0 4 1677 698 285 9 63 chr6 143211852 143212073 -6304964 - B3 SINE B2 -7 209 1 4 1677 754 231 111 173 chr6 143213114 143213502 -6303535 + ORR1D2 LTR MaLR 1 364 -6 4 1677 487 273 61 24 chr6 143214061 143214226 -6302811 - L1M5 LINE L1 -437 5687 5517 4 1677 195 279 14 14 chr6 143214358 143214427 -6302610 + MIRb SINE MIR 115 183 -85 4 1677 823 255 5 16 chr6 143214663 143214850 -6302187 + B3 SINE B2 2 186 -30 4 1677 625 227 96 28 chr6 143214906 143215083 -6301954 + MTD LTR MaLR 1 189 -230 4 1677 292 190 0 0 chr6 143215126 143215184 -6301853 - B3 SINE B2 -154 62 5 4 1677 433 331 14 0 chr6 143215683 143215822 -6301215 - L3 LINE CR1 -1113 3376 3236 4 1677 889 250 38 41 chr6 143216675 143216967 -6300070 - B4A SINE B4 0 292 2 4 1677 235 163 61 0 chr6 143217030 143217079 -6299958 - L3 LINE CR1 -2293 2196 2145 4 1677 351 154 0 0 chr6 143217903 143217968 -6299069 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1677 581 238 17 45 chr6 143218089 143218265 -6298772 - B3A SINE B2 0 198 28 4 1677 238 282 0 12 chr6 143219182 143219268 -6297769 + (TA)n Simple_repeat Simple_repeat 2 86 0 4 1677 217 357 54 0 chr6 143219746 143219875 -6297162 - MIRb SINE MIR -132 136 1 4 1677 752 263 103 54 chr6 143220475 143220759 -6296278 - B4 SINE B4 -4 288 11 4 1677 523 236 39 0 chr6 143222951 143223078 -6293959 + RSINE1 SINE B4 17 148 -17 4 1677 632 295 39 5 chr6 143223207 143223238 -6293799 - B3 SINE B2 0 216 182 4 1677 413 36 0 18 chr6 143223238 143223294 -6293743 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1677 632 295 39 5 chr6 143223294 143223470 -6293567 - B3 SINE B2 -35 181 2 4 1677 1075 259 38 100 chr6 143223820 143224219 -6292818 + MTEa LTR MaLR 6 379 0 4 1677 183 42 0 0 chr6 143224651 143224675 -6292362 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1677 642 269 26 16 chr6 143225366 143225555 -6291482 + B3A SINE B2 1 191 -7 4 1677 744 172 157 27 chr6 143225940 143226125 -6290912 - B3 SINE B2 0 216 8 4 1677 218 259 0 49 chr6 143226202 143226263 -6290774 - L2c LINE L2 0 3387 3330 5 1677 618 214 69 0 chr6 143226285 143226416 -6290621 - B3 SINE B2 -74 142 3 5 1677 513 260 97 84 chr6 143226416 143226631 -6290406 - B4A SINE B4 -67 225 8 5 1677 231 330 31 21 chr6 143227163 143227174 -6289863 + B1F1 SINE Alu 53 106 -43 5 1677 375 231 0 13 chr6 143227174 143227253 -6289784 + ID_B1 SINE B4 141 218 -6 5 1677 915 188 40 10 chr6 143227856 143228055 -6288982 - B3 SINE B2 -8 208 4 5 1677 235 273 30 0 chr6 143228068 143228134 -6288903 - PB1D10 SINE Alu -8 109 42 5 1677 210 337 68 19 chr6 143228144 143228247 -6288790 + L2 LINE L2 2669 2776 -643 5 1677 513 0 0 0 chr6 143228454 143228511 -6288526 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1677 207 0 0 0 chr6 143228511 143228533 -6288504 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1677 534 290 39 37 chr6 143230338 143230681 -6286356 - L1MA4 LINE L1 -371 5926 5580 5 1677 632 169 92 42 chr6 143230754 143230896 -6286141 - B1F1 SINE Alu 0 149 1 5 1677 1478 101 18 0 chr6 143231050 143231267 -6285770 - L1_Mus3 LINE L1 -12 6626 6406 5 1677 2471 119 22 5 chr6 143231267 143231637 -6285400 + L1_Mm LINE L1 4469 4844 -1039 5 1677 24 32 0 0 chr6 143231735 143231766 -6285271 + AT_rich Low_complexity Low_complexity 1 31 0 5 1677 696 244 49 19 chr6 143231820 143231850 -6285187 - B3 SINE B2 -5 211 178 5 1677 591 15 0 0 chr6 143231850 143231918 -6285119 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1677 696 244 49 19 chr6 143231918 143232092 -6284945 - B3 SINE B2 -39 177 2 5 1677 461 316 77 15 chr6 143232507 143232899 -6284138 - L1M4 LINE L1 -1668 4478 4063 5 1677 810 303 43 46 chr6 143232919 143233310 -6283727 + MLT1B LTR MaLR 1 390 0 5 1677 330 180 111 48 chr6 143233315 143233458 -6283579 - L1M4 LINE L1 -2107 4039 3893 5 1677 451 152 0 9 chr6 143233463 143233559 -6283478 - ID4 SINE ID -51 101 9 5 1677 261 242 30 15 chr6 143233589 143233656 -6283381 + ID4_ SINE ID 3 70 -13 5 1677 514 328 57 24 chr6 143233710 143233919 -6283118 - B3 SINE B2 0 216 1 5 1677 730 212 100 34 chr6 143235084 143235323 -6281714 - MTEa LTR MaLR -10 369 115 5 1677 620 225 42 28 chr6 143235344 143235486 -6281551 - MTEa LTR MaLR -231 148 5 5 1677 21 89 0 0 chr6 143235732 143235788 -6281249 + AT_rich Low_complexity Low_complexity 1 56 0 5 1677 233 333 37 49 chr6 143235889 143236053 -6280984 + L1MC LINE L1 5618 5779 -2103 5 1677 25 0 0 0 chr6 143236329 143236354 -6280683 + AT_rich Low_complexity Low_complexity 1 25 0 5 1677 445 233 112 0 chr6 143237767 143237883 -6279154 + RSINE1 SINE B4 4 132 -33 5 1677 276 30 0 0 chr6 143238020 143238053 -6278984 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1677 518 0 16 0 chr6 143238583 143238645 -6278392 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1677 22 56 0 0 chr6 143239126 143239162 -6277875 + AT_rich Low_complexity Low_complexity 1 36 0 5 1677 311 250 14 14 chr6 143239321 143239394 -6277643 - RSINE1 SINE B4 -15 150 78 5 1677 228 100 0 0 chr6 143239394 143239434 -6277603 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1677 1135 75 7 0 chr6 143239436 143239582 -6277455 - B1_Mus2 SINE Alu 0 147 1 5 1677 189 74 0 0 chr6 143239592 143239619 -6277418 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 5 1677 380 283 53 9 chr6 143239671 143239785 -6277252 - MER20 DNA MER1_type -97 122 4 5 1677 226 282 0 53 chr6 143239787 143239815 -6277222 + (TATATG)n Simple_repeat Simple_repeat 5 30 0 5 1677 300 27 0 0 chr6 143239815 143239852 -6277185 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1677 226 282 0 53 chr6 143239852 143239898 -6277139 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 5 1677 223 217 41 35 chr6 143239902 143240074 -6276963 + CT-rich Low_complexity Low_complexity 3 175 0 5 1677 253 253 30 24 chr6 143240088 143240352 -6276685 + CT-rich Low_complexity Low_complexity 1 265 0 5 1677 468 111 0 0 chr6 143240354 143240426 -6276611 + (TCCC)n Simple_repeat Simple_repeat 3 74 0 5 1677 352 242 108 29 chr6 143240521 143240623 -6276414 - PB1D10 SINE Alu -3 114 5 5 1677 241 281 37 0 chr6 143241185 143241267 -6275770 - MLT1D LTR MaLR -149 356 272 5 1677 657 284 69 15 chr6 143241452 143241656 -6275381 - ID_B1 SINE B4 -7 217 3 5 1677 510 17 0 0 chr6 143241682 143241741 -6275296 + (CATA)n Simple_repeat Simple_repeat 4 62 0 5 1677 675 0 0 0 chr6 143241742 143241817 -6275220 + (TCTA)n Simple_repeat Simple_repeat 1 75 0 5 1677 454 207 331 0 chr6 143241817 143241962 -6275075 - B3 SINE B2 -23 193 1 5 1677 314 272 0 69 chr6 143242038 143242125 -6274912 - 5S rRNA rRNA -33 88 8 5 1677 767 223 7 7 chr6 143242721 143242870 -6274167 - B1F SINE Alu 0 149 1 5 1677 232 261 0 0 chr6 143242970 143243016 -6274021 + (CATA)n Simple_repeat Simple_repeat 3 48 0 5 1677 233 211 94 10 chr6 143243060 143243156 -6273881 - Lx5 LINE L1 0 7050 6947 5 1677 475 282 19 39 chr6 143243222 143243377 -6273660 - RSINE1 SINE B4 -11 154 3 5 1677 694 293 75 8 chr6 143244239 143244480 -6272557 + B4A SINE B4 8 264 -28 5 1677 342 0 0 0 chr6 143244491 143244529 -6272508 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1677 22 0 0 0 chr6 143244531 143244553 -6272484 + AT_rich Low_complexity Low_complexity 1 22 0 5 1677 418 293 16 0 chr6 143244940 143245063 -6271974 + MTEa LTR MaLR 5 129 -250 5 1677 351 219 298 0 chr6 143245485 143245599 -6271438 - B1_Mur2 SINE Alu 0 149 2 5 1677 203 350 67 10 chr6 143245690 143245794 -6271243 - MIR SINE MIR -21 241 132 5 1677 235 277 96 0 chr6 143245865 143245948 -6271089 - MER53 DNA hAT 0 193 103 5 1677 247 282 0 90 chr6 143247073 143247151 -6269886 + B1F SINE Alu 1 71 -78 5 1677 292 282 8 79 chr6 143247203 143247330 -6269707 + PB1D7 SINE Alu 1 118 -2 5 1677 426 85 0 0 chr6 143247803 143247862 -6269175 + (GGGGA)n Simple_repeat Simple_repeat 2 60 0 5 1677 1078 14 34 0 chr6 143247864 143248012 -6269025 + (GA)n Simple_repeat Simple_repeat 1 153 0 5 1677 365 293 173 0 chr6 143248805 143248938 -6268099 - B4A SINE B4 -62 230 75 5 1677 309 167 16 32 chr6 143249376 143249438 -6267599 - BC1_Mm scRNA scRNA -80 72 12 5 1677 781 226 163 99 chr6 143249765 143250139 -6266898 + MTD LTR MaLR 8 405 -14 5 1677 1393 251 53 6 chr6 143251531 143251891 -6265146 + MTE2b LTR MaLR 3 379 0 5 1677 447 265 0 0 chr6 143252830 143252981 -6264056 + (TG)n Simple_repeat Simple_repeat 2 152 0 5 1677 470 263 39 34 chr6 143253759 143253961 -6263076 - MTEa LTR MaLR 0 379 160 5 1677 369 355 153 4 chr6 143253981 143254210 -6262827 - MTEb LTR MaLR -116 263 1 5 1677 686 318 114 15 chr6 143254289 143254682 -6262355 + ERVL-B4-int LTR ERVL 4629 5060 -654 5 1677 652 244 18 6 chr6 143254766 143254935 -6262102 + ERVL-B4-int LTR ERVL 5168 5338 -329 5 1677 245 314 154 0 chr6 143255034 143255222 -6261815 - L1MD LINE L1 -3465 2681 2465 5 1677 990 202 70 4 chr6 143256318 143256540 -6260497 + Lx6 LINE L1 7253 7696 0 5 1677 1335 42 14 0 chr6 143256690 143256904 -6260133 + (TCTA)n Simple_repeat Simple_repeat 1 216 0 5 1677 341 43 21 0 chr6 143256913 143256960 -6260077 + (TCCA)n Simple_repeat Simple_repeat 3 50 0 5 1677 369 254 78 23 chr6 143257196 143257325 -6259712 - ID_B1 SINE B4 -5 219 84 5 1677 496 292 129 78 chr6 143257436 143257770 -6259267 + ORR1E LTR MaLR 1 351 -8 5 1677 518 214 114 0 chr6 143258676 143258807 -6258230 - RSINE1 SINE B4 -16 149 4 5 1677 426 310 78 26 chr6 143259337 143259569 -6257468 - Tigger13a DNA MER2_type -67 704 461 5 1677 263 250 141 26 chr6 143259852 143259930 -6257107 + B1F SINE Alu 60 146 -3 5 1677 517 259 119 6 chr6 143259940 143260099 -6256938 + ID_B1 SINE B4 14 190 -34 5 1677 465 205 25 67 chr6 143260408 143260528 -6256509 - PB1D10 SINE Alu 0 117 3 5 1677 250 222 11 11 chr6 143260580 143260671 -6256366 + CT-rich Low_complexity Low_complexity 2 92 0 5 1677 766 199 14 24 chr6 143261016 143261207 -6255830 - B3 SINE B2 -9 186 2 5 1677 189 0 0 0 chr6 143261483 143261504 -6255533 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1678 515 243 66 61 chr6 143262532 143262729 -6254308 - B3A SINE B2 0 198 1 5 1678 418 268 94 44 chr6 143262833 143263013 -6254024 - RMER15 LTR ERVL -34 541 353 5 1678 578 177 47 146 chr6 143265399 143265480 -6251557 - B3A SINE B2 -9 189 118 5 1678 195 100 0 0 chr6 143265480 143265510 -6251527 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1678 578 177 47 146 chr6 143265510 143265620 -6251417 - B3A SINE B2 -81 117 17 5 1678 226 248 9 44 chr6 143265792 143265906 -6251131 + (CA)n Simple_repeat Simple_repeat 1 110 0 5 1678 846 0 0 0 chr6 143266618 143266712 -6250325 + (TTTCC)n Simple_repeat Simple_repeat 5 98 0 5 1678 704 158 0 8 chr6 143266712 143266846 -6250191 + CT-rich Low_complexity Low_complexity 3 135 0 5 1678 680 249 25 56 chr6 143268552 143268748 -6248289 - B3A SINE B2 -8 190 1 5 1678 227 342 80 12 chr6 143271550 143271713 -6245324 - L2a LINE L2 -293 3133 2960 5 1678 371 225 85 0 chr6 143272585 143272673 -6244364 + PB1D7 SINE Alu 13 107 -13 5 1678 609 33 21 11 chr6 143272673 143272766 -6244271 + (CAAAC)n Simple_repeat Simple_repeat 1 94 0 5 1678 678 218 0 0 chr6 143273932 143274317 -6242720 + (TG)n Simple_repeat Simple_repeat 1 385 0 5 1678 448 295 72 39 chr6 143274328 143274607 -6242430 - B4A SINE B4 0 292 5 5 1678 24 0 0 0 chr6 143275371 143275395 -6241642 + GC_rich Low_complexity Low_complexity 1 24 0 5 1678 691 258 42 97 chr6 143276691 143277022 -6240015 - ORR1E LTR MaLR -46 313 1 5 1678 739 169 0 0 chr6 143277936 143278066 -6238971 + B1_Mur4 SINE Alu 6 135 -15 5 1678 833 76 8 0 chr6 143278066 143278184 -6238853 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 6 1678 333 0 0 0 chr6 143278282 143278319 -6238718 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1678 1836 118 67 81 chr6 143278716 143279075 -6237962 - ORR1B1 LTR MaLR 0 394 41 6 1678 251 140 20 0 chr6 143279494 143279544 -6237493 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 6 1678 27 29 0 0 chr6 143279566 143279600 -6237437 + AT_rich Low_complexity Low_complexity 1 34 0 6 1678 620 26 13 0 chr6 143279646 143279724 -6237313 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 6 1678 234 290 0 0 chr6 143280335 143280428 -6236609 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 1678 558 0 0 0 chr6 143280476 143280538 -6236499 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1678 265 291 13 0 chr6 143280997 143281076 -6235961 - MER5A DNA MER1_type -82 107 28 6 1678 391 265 191 22 chr6 143281254 143281485 -6235552 + MLT1F1 LTR MaLR 299 568 -1 6 1678 208 369 77 40 chr6 143281556 143281883 -6235154 + L2a LINE L2 2982 3320 -106 6 1678 445 252 55 0 chr6 143282516 143282643 -6234394 - ID_B1 SINE B4 0 224 91 6 1678 2148 146 75 3 chr6 143282721 143283106 -6233931 + MTC LTR MaLR 1 413 -8 6 1678 274 321 132 11 chr6 143283327 143283516 -6233521 - LTR16E1 LTR ERVL -2 536 325 6 1678 511 158 16 0 chr6 143283742 143283869 -6233168 + (TG)n Simple_repeat Simple_repeat 2 130 0 6 1678 445 280 24 42 chr6 143283910 143284078 -6232959 - B4A SINE B4 0 292 128 6 1678 417 304 20 13 chr6 143284095 143284245 -6232792 + (CATATA)n Simple_repeat Simple_repeat 3 153 0 6 1678 459 0 0 0 chr6 143284252 143284303 -6232734 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1678 213 319 52 31 chr6 143284382 143284479 -6232558 - ID_B1 SINE B4 -47 177 79 6 1678 239 308 100 0 chr6 143284633 143284753 -6232284 + L2c LINE L2 3243 3374 -13 6 1678 3916 148 95 43 chr6 143285234 143286135 -6230902 + RLTR25B LTR ERVK 1 1103 0 6 1678 682 286 134 17 chr6 143286147 143286385 -6230652 + B4A SINE B4 2 267 -25 6 1678 184 224 0 29 chr6 143286387 143286409 -6230628 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1678 438 53 0 0 chr6 143286409 143286466 -6230571 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1678 184 224 0 29 chr6 143286466 143286512 -6230525 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1678 201 147 0 0 chr6 143286514 143286548 -6230489 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1678 531 112 0 0 chr6 143287383 143287463 -6229574 + (GAAAA)n Simple_repeat Simple_repeat 4 83 0 6 1678 477 34 0 0 chr6 143287484 143287543 -6229494 + (CCAA)n Simple_repeat Simple_repeat 2 60 0 6 1678 828 228 26 21 chr6 143287559 143287752 -6229285 + B3A SINE B2 1 194 -4 6 1678 250 233 41 18 chr6 143288596 143288817 -6228220 + (CATATA)n Simple_repeat Simple_repeat 1 226 0 6 1678 870 183 0 0 chr6 143288869 143289080 -6227957 + (CATATA)n Simple_repeat Simple_repeat 1 211 0 6 1678 779 179 6 0 chr6 143289080 143289259 -6227778 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1678 243 0 0 0 chr6 143289727 143289754 -6227283 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1678 488 287 54 0 chr6 143289754 143289883 -6227154 - RSINE1 SINE B4 -26 139 4 6 1678 2355 146 33 80 chr6 143291185 143291675 -6225362 - RMER19C LTR ERVK -1 610 144 6 1678 1226 186 181 25 chr6 143291754 143292080 -6224957 - MTD LTR MaLR -20 399 23 6 1678 803 209 39 34 chr6 143292321 143292511 -6224526 - ORR1D1 LTR MaLR 0 374 183 6 1678 348 43 0 0 chr6 143292511 143292557 -6224480 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1678 803 209 39 34 chr6 143292557 143292574 -6224463 - ORR1D1 LTR MaLR -192 182 166 6 1678 200 114 45 0 chr6 143292574 143292618 -6224419 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 6 1678 692 186 116 77 chr6 143292646 143292827 -6224210 - ORR1D1 LTR MaLR -186 188 1 6 1678 353 259 11 11 chr6 143293249 143293339 -6223698 + ERVL-E-int LTR ERVL 395 484 -5183 6 1678 503 276 29 0 chr6 143293736 143293904 -6223133 + B3 SINE B2 15 192 -6 6 1678 1176 0 21 0 chr6 143295410 143295554 -6221483 + (TCTA)n Simple_repeat Simple_repeat 2 148 0 6 1678 701 240 68 11 chr6 143295567 143295744 -6221293 - B3 SINE B2 -28 188 2 6 1678 486 207 156 7 chr6 143295839 143295980 -6221057 - B3 SINE B2 -17 199 38 6 1678 880 265 19 70 chr6 143295988 143296304 -6220733 - MTD-int LTR MaLR -957 301 2 6 1678 1711 242 45 2 chr6 143296305 143296707 -6220330 - MTD LTR MaLR 0 419 1 6 1678 311 295 48 119 chr6 143297877 143298212 -6218825 + LTR37B LTR ERV1 158 468 0 6 1678 198 143 0 0 chr6 143298252 143298287 -6218750 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1678 378 0 0 0 chr6 143298435 143298477 -6218560 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 1678 593 233 97 12 chr6 143298572 143298737 -6218300 - B3A SINE B2 -18 180 2 6 1678 207 302 22 44 chr6 143299106 143299241 -6217796 + GA-rich Low_complexity Low_complexity 3 134 0 6 1678 226 299 112 25 chr6 143299264 143299425 -6217612 - B4 SINE B4 0 292 118 6 1678 239 140 20 0 chr6 143299557 143299607 -6217430 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1678 474 257 0 50 chr6 143299609 143299728 -6217309 - RSINE1 SINE B4 0 165 53 6 1678 1559 279 103 16 chr6 143300456 143301010 -6216027 - Lx8 LINE L1 -3 7470 6869 6 1678 225 94 0 0 chr6 143303151 143303183 -6213854 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 1678 530 250 91 6 chr6 143303607 143303772 -6213265 - B3 SINE B2 0 216 38 6 1678 389 227 63 74 chr6 143304255 143304445 -6212592 - L1MC4 LINE L1 -140 7902 7715 6 1678 602 272 92 32 chr6 143304500 143304751 -6212286 + RLTR16 LTR ERVK 24 289 -216 6 1678 1110 16 0 0 chr6 143305260 143305388 -6211649 + (TTC)n Simple_repeat Simple_repeat 2 129 0 6 1678 409 311 2 31 chr6 143306098 143306256 -6210781 + L1M4 LINE L1 4860 5014 -1132 6 1678 700 123 16 39 chr6 143306296 143306457 -6210580 + ORR1D1 LTR MaLR 1 146 -248 6 1678 828 199 171 41 chr6 143306468 143306754 -6210283 + ORR1D1 LTR MaLR 66 374 0 6 1678 640 199 28 78 chr6 143306845 143307025 -6210012 + B3A SINE B2 6 176 -22 6 1678 241 248 85 9 chr6 143307124 143307230 -6209807 + L1M4 LINE L1 5159 5272 -874 6 1678 1170 48 0 20 chr6 143307260 143307409 -6209628 - B1_Mus2 SINE Alu 0 147 2 6 1678 279 54 0 0 chr6 143307663 143307700 -6209337 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1678 452 263 44 44 chr6 143307790 143307949 -6209088 + L1MA7 LINE L1 355 513 -5768 6 1678 922 342 55 38 chr6 143308483 143309063 -6207974 + L1MA7 LINE L1 933 1522 -4759 6 1678 276 341 24 0 chr6 143309065 143309150 -6207887 + RSINE1 SINE B4 44 130 -35 6 1678 422 49 16 0 chr6 143309162 143309223 -6207814 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1678 620 48 12 0 chr6 143309531 143309615 -6207422 + (GGGAGA)n Simple_repeat Simple_repeat 4 88 0 6 1678 234 0 0 0 chr6 143309896 143309922 -6207115 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1678 803 300 113 10 chr6 143310060 143310457 -6206580 + L1MA7 LINE L1 3601 4038 -2309 6 1678 1789 306 77 47 chr6 143310499 143311787 -6205250 + L1MA7 LINE L1 4237 5563 -784 6 1678 321 291 123 29 chr6 143311959 143312198 -6204839 + L1MA7 LINE L1 5809 6072 -432 6 1678 839 277 176 26 chr6 143312274 143312626 -6204411 + MTD LTR MaLR 1 405 -14 6 1678 299 44 22 0 chr6 143312643 143312688 -6204349 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 1678 922 276 119 111 chr6 143312725 143313849 -6203188 - L1M2 LINE L1 -4108 2741 1609 6 1678 212 86 29 0 chr6 143313945 143313980 -6203057 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 6 1678 788 286 86 8 chr6 143313981 143314224 -6202813 + B4A SINE B4 29 290 -2 6 1678 585 28 0 0 chr6 143314238 143314309 -6202728 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1678 283 250 24 0 chr6 143314491 143314575 -6202462 - RLTR18 LTR ERVK 0 512 427 6 1678 924 219 156 103 chr6 143314630 143315105 -6201932 - RLTR18 LTR ERVK -61 451 1 6 1678 212 250 15 0 chr6 143315262 143315330 -6201707 + A-rich Low_complexity Low_complexity 1 69 0 6 1678 234 62 0 0 chr6 143315339 143315371 -6201666 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1678 382 345 6 29 chr6 143315424 143315597 -6201440 - Lx7 LINE L1 -465 7231 7063 6 1678 418 277 135 23 chr6 143316663 143317029 -6200008 + L1MA7 LINE L1 6078 6498 -6 6 1678 472 278 9 0 chr6 143317228 143317343 -6199694 + PB1D7 SINE Alu 3 118 -2 6 1678 747 255 216 15 chr6 143317426 143317766 -6199271 + MTD LTR MaLR 8 416 -3 6 1678 343 256 107 32 chr6 143317781 143317925 -6199112 + L1MB7 LINE L1 5653 5819 -365 6 1678 3035 133 49 8 chr6 143317925 143318431 -6198606 - RLTR11A2 LTR ERVK 0 527 1 6 1678 343 286 106 50 chr6 143318431 143318505 -6198532 + L1MB7 LINE L1 5820 5891 -293 6 1678 315 250 0 125 chr6 143318835 143318931 -6198106 - RSINE1 SINE B4 0 165 82 6 1678 3102 93 22 14 chr6 143318960 143319189 -6197848 + RLTR11B LTR ERVK 4 237 -216 6 1678 964 134 6 11 chr6 143319189 143319370 -6197667 + GA-rich Low_complexity Low_complexity 1 180 0 6 1678 3102 93 22 14 chr6 143319370 143319586 -6197451 + RLTR11B LTR ERVK 238 453 0 6 1678 586 262 48 117 chr6 143319663 143319808 -6197229 + B3A SINE B2 52 186 -9 6 1678 238 222 0 18 chr6 143320284 143320339 -6196698 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1678 842 269 30 63 chr6 143320339 143320641 -6196396 - B4A SINE B4 0 292 1 6 1678 4014 204 37 21 chr6 143321837 143321970 -6195067 - RMER1A Other Other -2 1028 896 6 1678 261 0 0 0 chr6 143321970 143321999 -6195038 + (CCA)n Simple_repeat Simple_repeat 1 29 0 6 1678 4014 204 37 21 chr6 143321999 143322740 -6194297 - RMER1A Other Other -135 895 141 6 1678 360 269 42 21 chr6 143322917 143323061 -6193976 - L1MA4A LINE L1 -388 5915 5769 6 1678 1597 91 37 4 chr6 143323112 143323355 -6193682 - Lx3_Mus LINE L1 -1 7008 6758 6 1678 272 288 125 0 chr6 143325643 143325723 -6191314 + PB1D10 SINE Alu 12 101 -16 6 1678 246 62 0 0 chr6 143326180 143326212 -6190825 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1678 240 304 159 105 chr6 143326265 143326541 -6190496 - B4A SINE B4 -1 291 1 6 1678 266 157 0 56 chr6 143328397 143328451 -6188586 - ID_B1 SINE B4 0 224 174 6 1678 317 183 82 3 chr6 143328405 143328493 -6188544 - PB1D7 SINE Alu -8 112 15 6 1678 429 289 132 7 chr6 143328617 143328753 -6188284 + B3A SINE B2 2 154 -44 6 1678 459 48 0 0 chr6 143328758 143328820 -6188217 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1678 275 276 23 0 chr6 143329391 143329478 -6187559 + CT-rich Low_complexity Low_complexity 2 90 0 6 1678 675 286 57 0 chr6 143329531 143329741 -6187296 - B4 SINE B4 -15 277 56 6 1678 763 167 14 42 chr6 143330093 143330237 -6186800 - B1_Mur2 SINE Alu -7 142 3 7 1678 534 174 18 0 chr6 143330882 143330991 -6186046 + B3 SINE B2 2 112 -104 7 1678 241 156 0 0 chr6 143330983 143331028 -6186009 + B3 SINE B2 68 112 -104 7 1678 241 156 0 0 chr6 143331020 143331065 -6185972 + B3 SINE B2 68 112 -104 7 1678 252 156 0 0 chr6 143331057 143331102 -6185935 + B3 SINE B2 68 112 -104 7 1678 715 200 28 0 chr6 143331131 143331276 -6185761 + B3 SINE B2 68 216 0 7 1678 21 36 0 0 chr6 143331277 143331305 -6185732 + AT_rich Low_complexity Low_complexity 1 28 0 7 1678 576 113 0 0 chr6 143331405 143331502 -6185535 - BC1_Mm scRNA scRNA -55 97 1 7 1678 259 160 0 20 chr6 143331460 143331511 -6185526 - ZP3AR Satellite Satellite -128 84 35 7 1678 431 255 42 5 chr6 143331752 143331922 -6185115 - Lx4A LINE L1 -1150 5908 5695 7 1678 736 211 34 48 chr6 143332014 143332223 -6184814 - MTEa LTR MaLR -2 377 172 7 1678 607 276 83 5 chr6 143332816 143333009 -6184028 - B4A SINE B4 -4 288 81 7 1678 23 0 0 0 chr6 143333009 143333032 -6184005 + AT_rich Low_complexity Low_complexity 1 23 0 7 1678 3836 45 4 2 chr6 143333032 143333498 -6183539 - L1Md_F3 LINE L1 0 6584 6118 7 1678 419 219 0 40 chr6 143333499 143333599 -6183438 - B4A SINE B4 -196 96 1 7 1678 399 234 174 7 chr6 143334127 143334282 -6182755 + MIRb SINE MIR 80 260 -8 7 1678 351 0 0 0 chr6 143334649 143334688 -6182349 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1678 1712 241 45 0 chr6 143334916 143335318 -6181719 - MTC LTR MaLR 0 421 2 7 1678 397 121 39 29 chr6 143335960 143336062 -6180975 + GA-rich Low_complexity Low_complexity 5 107 0 7 1678 1142 154 13 68 chr6 143336410 143336647 -6180390 + URR1A DNA MER1_type 3 226 0 7 1678 1008 101 0 0 chr6 143336663 143336841 -6180196 + (GA)n Simple_repeat Simple_repeat 1 178 0 7 1678 531 45 0 0 chr6 143336902 143336968 -6180069 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 7 1678 358 172 94 7 chr6 143337337 143337645 -6179392 + (TCTG)n Simple_repeat Simple_repeat 1 334 0 7 1678 404 271 131 35 chr6 143337838 143337865 -6179172 + B4 SINE B4 69 224 -65 7 1678 543 148 217 0 chr6 143337865 143337980 -6179057 + B1_Mus1 SINE Alu 7 146 -2 7 1678 582 175 0 0 chr6 143337983 143338097 -6178940 + (TA)n Simple_repeat Simple_repeat 1 114 0 7 1678 353 75 0 19 chr6 143338096 143338150 -6178887 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1678 477 0 0 0 chr6 143338475 143338528 -6178509 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1678 3112 28 3 0 chr6 143338550 143338937 -6178100 + MTA_Mm LTR MaLR 9 396 0 7 1678 24 0 0 0 chr6 143339005 143339029 -6178008 + AT_rich Low_complexity Low_complexity 1 24 0 7 1678 1175 170 15 0 chr6 143339029 143339229 -6177808 - B3 SINE B2 -9 207 5 7 1678 343 253 61 65 chr6 143339490 143339740 -6177297 - L1ME3 LINE L1 -113 6049 5800 7 1678 474 299 87 28 chr6 143339801 143340109 -6176928 - L1MA9 LINE L1 -3 6309 5978 7 1678 294 299 275 14 chr6 143340105 143340542 -6176495 - L1MA9 LINE L1 -958 5185 4635 7 1678 648 243 64 12 chr6 143340590 143340761 -6176276 + B3A SINE B2 12 191 -7 7 1678 332 253 11 0 chr6 143340776 143340867 -6176170 - L1M4 LINE L1 -1522 4624 4533 7 1678 505 226 149 44 chr6 143340957 143341138 -6175899 + RMER30 DNA MER1_type 2 201 -1 7 1678 241 316 88 80 chr6 143341435 143341686 -6175351 - L1ME3 LINE L1 -406 5756 5504 7 1678 189 0 0 0 chr6 143341835 143341856 -6175181 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1678 290 250 31 46 chr6 143343417 143343547 -6173490 - RMER15 LTR ERVL -112 463 336 7 1678 22 35 0 0 chr6 143344502 143344531 -6172506 + AT_rich Low_complexity Low_complexity 1 29 0 7 1678 3796 179 48 20 chr6 143344692 143345479 -6171558 - Lx2B LINE L1 -7 6993 6185 7 1678 270 0 0 0 chr6 143345479 143345509 -6171528 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1678 987 9 0 0 chr6 143345509 143345620 -6171417 + (GA)n Simple_repeat Simple_repeat 1 112 0 7 1678 629 182 33 0 chr6 143345657 143345778 -6171259 - B3A SINE B2 -72 126 2 7 1678 766 99 26 0 chr6 143345927 143346078 -6170959 + (CAGAGA)n Simple_repeat Simple_repeat 6 160 0 7 1678 711 121 11 23 chr6 143346115 143346292 -6170745 + (CAGAGA)n Simple_repeat Simple_repeat 6 180 0 7 1678 234 170 0 0 chr6 143346297 143346344 -6170693 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1678 290 377 33 51 chr6 143346411 143346626 -6170411 + MER119 DNA MER1_type 30 240 -343 7 1678 440 291 66 46 chr6 143346656 143346897 -6170140 + MER119 DNA MER1_type 336 581 -2 7 1678 422 288 14 0 chr6 143346947 143347086 -6169951 + ID_B1 SINE B4 83 223 -1 7 1678 368 304 84 44 chr6 143347302 143347779 -6169258 - L1MB3 LINE L1 -5 6175 5678 7 1678 894 262 138 9 chr6 143347953 143348280 -6168757 - ORR1D2 LTR MaLR 0 370 2 7 1678 541 298 37 28 chr6 143349022 143349236 -6167801 + ORR1E LTR MaLR 16 231 -128 7 1678 549 262 30 35 chr6 143352108 143352306 -6164731 - L1M5 LINE L1 -3478 2668 2472 7 1678 355 299 20 26 chr6 143352689 143352840 -6164197 - RSINE1 SINE B4 -14 151 2 7 1678 277 370 39 0 chr6 143353066 143353220 -6163817 + MTE-int LTR MaLR 255 414 -1166 7 1678 645 275 13 30 chr6 143353303 143353501 -6163536 + B3A SINE B2 1 190 -5 7 1678 210 135 0 51 chr6 143353897 143353936 -6163101 + polypyrimidine Low_complexity Low_complexity 3 39 0 7 1678 483 48 0 0 chr6 143354188 143354250 -6162787 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1678 557 282 63 79 chr6 143354253 143354507 -6162530 - B4 SINE B4 -19 273 24 7 1678 408 235 101 10 chr6 143354589 143354688 -6162349 - Lx5 LINE L1 -164 6886 6779 7 1678 845 224 29 0 chr6 143354981 143355155 -6161882 - B3A SINE B2 -18 180 2 7 1678 234 91 0 0 chr6 143358099 143358132 -6158905 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1678 414 0 0 0 chr6 143358155 143358201 -6158836 + (T)n Simple_repeat Simple_repeat 1 46 0 7 1678 668 288 55 9 chr6 143359436 143359653 -6157384 - ORR1E LTR MaLR -118 241 15 7 1678 27 0 0 0 chr6 143361024 143361051 -6155986 + AT_rich Low_complexity Low_complexity 1 27 0 7 1678 315 333 44 0 chr6 143361962 143361982 -6155055 + ID_B1 SINE B4 61 141 -83 7 1678 338 299 11 0 chr6 143361982 143362069 -6154968 + PB1D10 SINE Alu 1 88 -29 7 1678 258 136 0 0 chr6 143362083 143362127 -6154910 + (ATG)n Simple_repeat Simple_repeat 3 46 0 7 1678 696 61 0 0 chr6 143362203 143362301 -6154736 + (TAGA)n Simple_repeat Simple_repeat 2 99 0 7 1678 209 200 25 0 chr6 143363408 143363448 -6153589 + CT-rich Low_complexity Low_complexity 1 41 0 7 1678 378 306 47 20 chr6 143364686 143364836 -6152201 + MTD LTR MaLR 252 405 -14 7 1678 1195 65 27 20 chr6 143365181 143365591 -6151446 + (TCTA)n Simple_repeat Simple_repeat 1 413 0 7 1678 387 321 84 64 chr6 143365627 143366033 -6151004 - HAL1 LINE L1 -843 1664 1251 7 1678 348 24 0 0 chr6 143366832 143366873 -6150164 + (TTA)n Simple_repeat Simple_repeat 2 42 0 7 1678 396 0 0 0 chr6 143367103 143367147 -6149890 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1678 795 283 70 4 chr6 143367158 143367385 -6149652 - B4 SINE B4 -8 284 43 7 1678 1248 233 34 136 chr6 143367805 143368217 -6148820 + ORR1D2 LTR MaLR 1 370 0 7 1678 23 0 0 0 chr6 143368359 143368382 -6148655 + AT_rich Low_complexity Low_complexity 1 23 0 7 1678 555 90 0 0 chr6 143368977 143369055 -6147982 + (TCCC)n Simple_repeat Simple_repeat 4 81 0 7 1678 24 67 0 0 chr6 143370012 143370057 -6146980 + AT_rich Low_complexity Low_complexity 1 45 0 7 1678 726 264 5 33 chr6 143370106 143370143 -6146894 - B3A SINE B2 -19 179 146 7 1678 441 0 0 0 chr6 143370143 143370192 -6146845 + (GA)n Simple_repeat Simple_repeat 2 50 0 7 1678 726 264 5 33 chr6 143370192 143370338 -6146699 - B3A SINE B2 -53 145 1 7 1678 497 241 40 60 chr6 143370666 143370816 -6146221 + B1_Mur1 SINE Alu 1 147 -2 7 1678 195 152 0 0 chr6 143371101 143371147 -6145890 + T-rich Low_complexity Low_complexity 1 46 0 7 1678 234 0 0 0 chr6 143372262 143372288 -6144749 + (CG)n Simple_repeat Simple_repeat 2 27 0 7 1678 351 0 0 0 chr6 143372288 143372326 -6144711 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1678 2720 55 3 0 chr6 143373077 143373403 -6143634 + ORR1A2 LTR MaLR 1 327 0 7 1678 248 348 58 22 chr6 143373511 143373649 -6143388 - RLTR18B LTR ERVK 0 512 370 7 1678 642 309 72 5 chr6 143374390 143374598 -6142439 + B4 SINE B4 2 223 -69 7 1678 525 16 0 0 chr6 143374727 143374789 -6142248 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1678 507 33 0 0 chr6 143375285 143375346 -6141691 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 7 1678 1103 91 12 0 chr6 143375346 143375510 -6141527 + (TTTC)n Simple_repeat Simple_repeat 3 169 0 7 1678 2128 200 72 39 chr6 143375510 143376014 -6141023 - RMER1B Other Other -9 1057 536 7 1678 356 311 55 12 chr6 143375994 143376157 -6140880 - RMER1B Other Other -832 234 65 7 1678 328 246 0 68 chr6 143376243 143376435 -6140602 + CT-rich Low_complexity Low_complexity 2 180 0 7 1678 1239 276 120 17 chr6 143376783 143377266 -6139771 - MT2A LTR ERVL 0 533 1 7 1678 1770 183 63 8 chr6 143377565 143377928 -6139109 - MTD LTR MaLR -7 412 30 7 1678 2012 107 29 0 chr6 143377928 143378238 -6138799 + ORR1A2 LTR MaLR 1 319 -8 7 1678 275 297 0 0 chr6 143378424 143378488 -6138549 - ID4 SINE ID -19 64 1 7 1678 457 265 43 0 chr6 143378501 143378618 -6138419 - ID_B1 SINE B4 -19 205 84 7 1678 396 0 0 0 chr6 143378742 143378786 -6138251 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1678 392 215 100 36 chr6 143379870 143380010 -6137027 + B1F SINE Alu 1 149 0 7 1678 491 198 95 0 chr6 143380157 143380273 -6136764 + B1_Mur2 SINE Alu 9 135 -14 7 1678 684 36 0 0 chr6 143380290 143380373 -6136664 + (GGA)n Simple_repeat Simple_repeat 3 85 0 7 1678 234 0 0 0 chr6 143380389 143380415 -6136622 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1678 26 30 0 0 chr6 143380960 143380993 -6136044 + AT_rich Low_complexity Low_complexity 1 33 0 8 1678 214 325 70 9 chr6 143381157 143381272 -6135765 + L2b LINE L2 3254 3375 0 8 1678 213 213 0 0 chr6 143382205 143382252 -6134785 + GA-rich Low_complexity Low_complexity 2 48 0 8 1678 545 310 53 5 chr6 143382906 143382920 -6134117 - B3A SINE B2 0 198 185 8 1678 531 0 0 0 chr6 143382920 143382979 -6134058 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1678 545 310 53 5 chr6 143382979 143383152 -6133885 - B3A SINE B2 -14 184 3 8 1678 1109 118 2 0 chr6 143384271 143384666 -6132371 + (CA)n Simple_repeat Simple_repeat 1 395 0 8 1678 259 187 0 45 chr6 143385166 143385278 -6131759 + (CACCC)n Simple_repeat Simple_repeat 5 111 0 8 1678 184 30 29 29 chr6 143385730 143385764 -6131273 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 8 1678 215 291 28 124 chr6 143388089 143388234 -6128803 + L2c LINE L2 3256 3386 -1 8 1678 468 190 0 0 chr6 143388415 143388494 -6128543 + RMER30 DNA MER1_type 7 85 -117 8 1678 252 113 29 49 chr6 143388505 143388607 -6128430 + A-rich Low_complexity Low_complexity 1 100 0 8 1678 289 266 31 41 chr6 143388618 143388716 -6128321 + RMER30 DNA MER1_type 100 196 -6 8 1678 366 264 99 15 chr6 143389481 143389612 -6127425 - RSINE1 SINE B4 -12 153 12 8 1678 255 293 80 45 chr6 143390001 143390201 -6126836 + RLTR21 LTR ERVK 1048 1254 -318 8 1678 485 217 0 6 chr6 143390201 143390382 -6126655 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1678 3517 34 80 0 chr6 143390389 143390829 -6126208 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1678 394 378 59 16 chr6 143390850 143391105 -6125932 - B4A SINE B4 0 292 27 8 1678 974 281 110 42 chr6 143391354 143391925 -6125112 - L1MB8 LINE L1 -29 6149 5540 8 1678 275 0 0 28 chr6 143392278 143392314 -6124723 + (GGGTG)n Simple_repeat Simple_repeat 2 36 0 8 1678 23 33 0 0 chr6 143392501 143392531 -6124506 + AT_rich Low_complexity Low_complexity 1 30 0 8 1679 816 80 0 0 chr6 143393849 143393962 -6123075 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 8 1679 549 80 0 0 chr6 143393962 143394037 -6123000 + (TC)n Simple_repeat Simple_repeat 1 75 0 8 1679 719 196 0 47 chr6 143394037 143394187 -6122850 - B1_Mur1 SINE Alu -1 148 6 8 1679 197 310 134 43 chr6 143395955 143396164 -6120873 + MIR SINE MIR 18 245 -17 8 1679 324 303 55 9 chr6 143396180 143396290 -6120747 - PB1D7 SINE Alu 0 120 6 8 1679 316 344 61 0 chr6 143396356 143396487 -6120550 - ID_B1 SINE B4 -2 222 84 8 1679 393 257 73 100 chr6 143396501 143396861 -6120176 + L1MA10 LINE L1 5782 6272 -62 8 1679 203 218 0 18 chr6 143397902 143397958 -6119079 + CT-rich Low_complexity Low_complexity 4 58 0 8 1679 183 80 0 0 chr6 143398138 143398163 -6118874 + (CATG)n Simple_repeat Simple_repeat 2 26 0 8 1679 972 223 78 44 chr6 143399187 143399483 -6117554 - ORR1D2 LTR MaLR 0 370 65 8 1679 243 242 36 114 chr6 143399617 143399757 -6117280 - ORR1C1 LTR MaLR -240 138 10 8 1679 444 277 38 8 chr6 143400600 143400731 -6116306 + RSINE1 SINE B4 3 137 -28 8 1679 235 146 146 0 chr6 143401424 143401479 -6115558 - B4A SINE B4 -222 70 8 8 1679 248 372 0 0 chr6 143401478 143401556 -6115481 - MLT1D LTR MaLR -398 107 30 8 1679 1032 224 10 14 chr6 143401614 143401822 -6115215 - B3 SINE B2 -7 209 3 8 1679 25 65 0 0 chr6 143402397 143402443 -6114594 + AT_rich Low_complexity Low_complexity 1 46 0 8 1679 245 102 0 39 chr6 143402527 143402578 -6114459 + (CAAAAA)n Simple_repeat Simple_repeat 1 49 0 8 1679 261 200 16 48 chr6 143402975 143403101 -6113936 + (TTATA)n Simple_repeat Simple_repeat 3 124 0 8 1679 3411 194 12 76 chr6 143403124 143403887 -6113150 - Lx6 LINE L1 -169 7291 6578 8 1679 1686 135 22 121 chr6 143403976 143404431 -6112606 - RMER17C LTR ERVK 0 410 1 8 1679 543 177 115 45 chr6 143404691 143404850 -6112187 - B3 SINE B2 0 216 61 8 1679 359 268 152 42 chr6 143404836 143404965 -6112072 - RCHARR1 DNA MER1_type -762 212 65 8 1679 180 0 0 0 chr6 143404965 143404985 -6112052 + (CTTG)n Simple_repeat Simple_repeat 1 20 0 8 1679 432 0 0 0 chr6 143404986 143405034 -6112003 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 8 1679 359 268 152 42 chr6 143405034 143405093 -6111944 - RCHARR1 DNA MER1_type -910 64 3 8 1679 267 103 0 0 chr6 143405239 143405278 -6111759 + (GGA)n Simple_repeat Simple_repeat 1 39 0 8 1679 21 0 0 0 chr6 143406435 143406456 -6110581 + AT_rich Low_complexity Low_complexity 1 21 0 8 1679 325 282 12 0 chr6 143407712 143407797 -6109240 - MIRb SINE MIR -128 140 55 8 1679 776 245 162 52 chr6 143408345 143408672 -6108365 - ORR1D2 LTR MaLR -2 368 6 8 1679 531 301 135 101 chr6 143408741 143409148 -6107889 + MLT2B1 LTR ERVL 8 428 -92 8 1679 767 128 29 21 chr6 143409181 143409428 -6107609 + (TAGA)n Simple_repeat Simple_repeat 1 249 0 8 1679 428 325 0 7 chr6 143410867 143411036 -6106001 - L1M5 LINE L1 -426 5738 5576 8 1679 324 64 0 0 chr6 143411069 143411116 -6105921 + (CAGT)n Simple_repeat Simple_repeat 4 50 0 8 1679 290 381 37 0 chr6 143411137 143411326 -6105711 - LTR86C LTR ERVL -422 199 4 8 1679 414 0 0 0 chr6 143411516 143411562 -6105475 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1679 443 123 0 12 chr6 143411562 143411644 -6105393 + (GA)n Simple_repeat Simple_repeat 1 81 0 8 1679 705 175 11 22 chr6 143411652 143411833 -6105204 + GA-rich Low_complexity Low_complexity 2 180 0 8 1679 1962 175 141 5 chr6 143412639 143413087 -6103950 - RMER1B Other Other -2 1064 556 8 1679 955 215 198 0 chr6 143413105 143413250 -6103787 - RMER1B Other Other -736 330 140 8 1679 1202 21 0 7 chr6 143413250 143413396 -6103641 + (TTCCC)n Simple_repeat Simple_repeat 3 147 0 8 1679 955 215 198 0 chr6 143413396 143413487 -6103550 - RMER1B Other Other -927 139 49 8 1679 282 278 10 40 chr6 143414199 143414300 -6102737 + CT-rich Low_complexity Low_complexity 4 101 0 8 1679 490 305 51 60 chr6 143414370 143414586 -6102451 - B4 SINE B4 -70 222 9 8 1679 38872 40 0 4 chr6 143414994 143421311 -6095726 - L1Md_T LINE L1 0 6585 196 8 1679 1091 88 0 33 chr6 143421447 143421599 -6095438 + B1_Mus1 SINE Alu 2 148 0 8 1679 192 149 0 0 chr6 143421606 143421653 -6095384 + (A)n Simple_repeat Simple_repeat 1 47 0 8 1679 619 149 8 8 chr6 143422270 143422392 -6094645 + GA-rich Low_complexity Low_complexity 2 123 0 8 1679 281 95 0 60 chr6 143422424 143422491 -6094546 + (TAA)n Simple_repeat Simple_repeat 2 64 0 8 1679 372 285 206 12 chr6 143422811 143422971 -6094066 - ID_B1 SINE B4 -33 191 1 8 1679 1351 283 71 5 chr6 143423239 143423647 -6093390 + RCHARR1 DNA MER1_type 35 469 -505 8 1679 438 298 56 5 chr6 143423644 143423860 -6093177 + RCHARR1 DNA MER1_type 748 974 0 8 1679 364 290 88 33 chr6 143424795 143424977 -6092060 + MER53 DNA hAT 2 193 0 8 1679 1464 273 96 34 chr6 143425441 143426327 -6090710 - Lx7 LINE L1 -1160 6313 5356 8 1679 213 39 0 0 chr6 143426387 143426413 -6090624 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 8 1679 730 182 112 11 chr6 143426440 143426618 -6090419 + URR1B DNA MER1_type 30 225 0 8 1679 1359 74 0 0 chr6 143428790 143429392 -6087645 + (TG)n Simple_repeat Simple_repeat 1 602 0 8 1679 722 330 60 50 chr6 143429728 143430188 -6086849 + L1MA4 LINE L1 5520 5954 -682 8 1679 468 313 155 15 chr6 143430380 143430724 -6086313 + RCHARR1 DNA MER1_type 63 454 -520 8 1679 280 236 94 8 chr6 143430730 143430858 -6086179 + RCHARR1 DNA MER1_type 755 893 -81 8 1679 220 186 254 0 chr6 143430830 143430889 -6086148 - B2_Mm2 SINE B2 -121 74 1 8 1679 602 235 46 46 chr6 143430905 143431101 -6085936 - B3A SINE B2 -1 197 2 8 1679 28 29 0 0 chr6 143431113 143431148 -6085889 + AT_rich Low_complexity Low_complexity 1 35 0 8 1679 26 0 0 0 chr6 143431467 143431493 -6085544 + AT_rich Low_complexity Low_complexity 1 26 0 8 1679 303 28 0 0 chr6 143432939 143432975 -6084062 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1679 573 274 75 50 chr6 143432990 143433270 -6083767 - ORR1E LTR MaLR -41 318 32 8 1679 1518 162 97 16 chr6 143434275 143434594 -6082443 - RMER1C Other Other -9 1333 989 8 1679 1073 273 111 10 chr6 143435604 143436011 -6081026 + RCHARR1 DNA MER1_type 4 451 -523 8 1679 269 299 216 11 chr6 143436028 143436204 -6080833 - B3 SINE B2 -4 212 1 8 1679 357 277 26 9 chr6 143436239 143436352 -6080685 - RCHARR1 DNA MER1_type -815 159 45 8 1679 820 226 13 52 chr6 143436376 143436609 -6080428 + RCHARR1 DNA MER1_type 748 971 -3 8 1679 334 269 9 0 chr6 143437075 143437183 -6079854 - MamRep434 DNA TcMar -2 424 316 8 1679 1249 41 0 0 chr6 143437456 143437603 -6079434 - B1_Mus2 SINE Alu 0 147 1 8 1679 217 253 0 22 chr6 143437826 143437915 -6079122 + T-rich Low_complexity Low_complexity 6 92 0 8 1679 253 266 0 0 chr6 143437873 143437937 -6079100 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1679 329 287 29 29 chr6 143437949 143438053 -6078984 - B4 SINE B4 -162 130 27 8 1679 764 322 99 86 chr6 143438552 143439018 -6078019 + MLT2B2 LTR ERVL 5 476 -39 8 1679 1398 24 22 5 chr6 143439051 143439693 -6077344 + (TCTA)n Simple_repeat Simple_repeat 1 653 0 8 1679 619 236 21 7 chr6 143439884 143440029 -6077008 - B1F SINE Alu -2 147 1 8 1679 272 91 55 0 chr6 143441435 143441490 -6075547 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 8 1679 798 219 42 52 chr6 143441610 143441822 -6075215 - B3 SINE B2 -6 210 1 8 1679 783 159 6 18 chr6 143443848 143444015 -6073022 + GA-rich Low_complexity Low_complexity 1 165 0 8 1679 477 0 0 0 chr6 143444017 143444070 -6072967 + (GAAA)n Simple_repeat Simple_repeat 1 53 0 8 1679 504 0 0 0 chr6 143444599 143444655 -6072382 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1679 249 217 0 0 chr6 143444662 143444745 -6072292 + GA-rich Low_complexity Low_complexity 1 83 0 8 1679 938 127 7 0 chr6 143444840 143444982 -6072055 - B1_Mus1 SINE Alu 0 148 6 8 1679 626 279 48 21 chr6 143445015 143445202 -6071835 - B3A SINE B2 -5 193 2 8 1679 914 162 99 16 chr6 143445401 143445583 -6071454 + MTC LTR MaLR 139 335 -86 9 1679 712 191 14 34 chr6 143445621 143445767 -6071270 + B1_Mur2 SINE Alu 6 148 -1 9 1679 432 0 0 0 chr6 143445940 143445988 -6071049 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1679 908 73 0 29 chr6 143446333 143446473 -6070564 + B1_Mus1 SINE Alu 13 148 0 9 1679 361 312 31 25 chr6 143446566 143446727 -6070310 - RSINE1 SINE B4 0 165 4 9 1679 21 0 0 0 chr6 143448110 143448131 -6068906 + AT_rich Low_complexity Low_complexity 1 21 0 9 1679 253 308 37 37 chr6 143449983 143450091 -6066946 + MLT1A0 LTR MaLR 4 111 -254 9 1679 723 266 111 86 chr6 143450418 143450743 -6066294 + MTEa LTR MaLR 4 336 -43 9 1679 531 31 0 0 chr6 143452146 143452211 -6064826 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1679 351 309 0 11 chr6 143453218 143453313 -6063724 + B4A SINE B4 4 97 -195 9 1679 876 148 51 6 chr6 143454090 143454246 -6062791 - Lx4A LINE L1 -3 7055 6893 9 1679 1906 111 3 69 chr6 143454254 143454603 -6062434 - IAPLTR1a_Mm LTR ERVK -11 326 1 9 1679 59162 11 1 13 chr6 143454603 143461163 -6055874 - IAPEz-int LTR ERVK 0 6481 1 9 1679 1917 108 3 69 chr6 143461164 143461513 -6055524 - IAPLTR1a_Mm LTR ERVK -11 326 1 9 1679 1786 166 40 2 chr6 143461513 143461840 -6055197 - Lx4A LINE L1 -160 6898 6565 9 1679 1202 163 91 4 chr6 143462558 143462810 -6054227 - Lx5 LINE L1 -42 7008 6735 9 1679 225 285 147 54 chr6 143462823 143462841 -6054196 + L1M5 LINE L1 2558 2574 -3572 9 1679 756 97 0 0 chr6 143462841 143462965 -6054072 + (TC)n Simple_repeat Simple_repeat 1 124 0 9 1679 248 285 147 54 chr6 143462965 143463280 -6053757 + L1M5 LINE L1 2575 2922 -3224 9 1679 561 319 60 37 chr6 143463604 143463952 -6053085 - L1M2 LINE L1 -1100 5043 4688 9 1679 311 369 103 28 chr6 143464011 143464479 -6052558 + L1M5 LINE L1 4558 5060 -1086 9 1679 279 0 0 0 chr6 143464517 143464548 -6052489 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 9 1679 422 94 93 12 chr6 143464755 143464917 -6052120 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 9 1679 216 275 36 48 chr6 143465141 143465225 -6051812 + MIRb SINE MIR 48 130 -138 9 1679 316 111 0 31 chr6 143467779 143467802 -6049235 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 9 1679 1389 61 0 0 chr6 143467802 143467982 -6049055 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 9 1679 316 111 0 31 chr6 143467982 143468023 -6049014 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 9 1679 634 336 41 41 chr6 143468072 143468463 -6048574 + MLT1H LTR MaLR 39 429 -120 9 1679 576 299 98 0 chr6 143468536 143468730 -6048307 + MER58A DNA MER1_type 2 214 -10 9 1679 247 200 16 16 chr6 143468736 143468797 -6048240 + MLT1H LTR MaLR 489 549 0 9 1679 340 286 96 93 chr6 143468862 143469247 -6047790 - MLT1H2 LTR MaLR -46 443 58 9 1679 651 272 20 98 chr6 143470889 143470944 -6046093 + RLTR11B LTR ERVK 1 37 -416 9 1679 4097 53 0 0 chr6 143470944 143471437 -6045600 - L1_Mus1 LINE L1 0 6567 6075 9 1679 651 294 25 82 chr6 143471437 143471901 -6045136 + RLTR11B LTR ERVK 38 490 -38 9 1679 219 280 0 13 chr6 143472273 143472349 -6044688 + (TG)n Simple_repeat Simple_repeat 1 75 0 9 1679 822 268 80 41 chr6 143472946 143473663 -6043374 - L1M4 LINE L1 -552 5627 4891 9 1679 272 268 71 0 chr6 143473945 143474057 -6042980 - L1M5 LINE L1 -533 5640 5521 9 1679 437 257 0 0 chr6 143474269 143474370 -6042667 + B3A SINE B2 1 101 -97 9 1679 260 333 79 13 chr6 143474370 143474421 -6042616 + RSINE1 SINE B4 2 163 -2 9 1679 585 269 19 72 chr6 143474500 143474708 -6042329 - B3A SINE B2 0 198 2 9 1679 1140 217 101 45 chr6 143474897 143475254 -6041783 + ORR1C1 LTR MaLR 2 378 0 9 1679 315 0 0 0 chr6 143475324 143475359 -6041678 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 9 1679 419 0 20 0 chr6 143475359 143475410 -6041627 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1679 274 315 38 66 chr6 143475485 143475696 -6041341 - L1M4 LINE L1 -1445 4701 4497 9 1679 639 264 109 11 chr6 143475787 143475971 -6041066 + B3 SINE B2 1 202 -14 9 1679 677 163 6 0 chr6 143475996 143476174 -6040863 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 9 1679 31 44 0 0 chr6 143476191 143476236 -6040801 + AT_rich Low_complexity Low_complexity 1 45 0 9 1679 866 287 70 12 chr6 143476314 143476658 -6040379 - ORR1E LTR MaLR 0 379 3 9 1679 2680 113 2 141 chr6 143477065 143477569 -6039468 - RLTR10C LTR ERVK -2 434 1 9 1679 276 77 0 0 chr6 143478155 143478194 -6038843 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1679 217 301 123 0 chr6 143478289 143478362 -6038675 + RSINE1 SINE B4 84 165 0 9 1679 213 65 0 0 chr6 143478794 143478825 -6038212 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1679 189 0 0 0 chr6 143479879 143479900 -6037137 + (TC)n Simple_repeat Simple_repeat 2 22 0 9 1679 543 31 0 0 chr6 143479900 143479964 -6037073 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1679 240 111 0 0 chr6 143480901 143480937 -6036100 + (TAA)n Simple_repeat Simple_repeat 1 36 0 9 1679 756 214 0 38 chr6 143482230 143482390 -6034647 - B3 SINE B2 -60 156 3 9 1679 374 257 147 72 chr6 143482489 143482850 -6034187 - Lx8 LINE L1 -19 7454 7067 9 1679 1286 151 51 125 chr6 143482884 143483315 -6033722 - RMER17C LTR ERVK -11 399 1 9 1679 205 300 75 32 chr6 143483461 143483554 -6033483 + MIR SINE MIR 49 145 -117 9 1679 244 353 0 0 chr6 143483629 143483697 -6033340 + ID4 SINE ID 10 77 -6 9 1679 290 259 0 58 chr6 143485884 143485970 -6031067 + ID4_ SINE ID 3 83 0 9 1679 705 260 40 0 chr6 143487066 143487243 -6029794 - B3A SINE B2 -14 184 1 9 1679 532 260 40 161 chr6 143487351 143487781 -6029256 - MTEa LTR MaLR -1 378 1 9 1679 24 0 0 0 chr6 143488316 143488340 -6028697 + AT_rich Low_complexity Low_complexity 1 24 0 9 1679 204 167 0 23 chr6 143488537 143488580 -6028457 + (TA)n Simple_repeat Simple_repeat 1 42 0 9 1679 898 277 54 20 chr6 143489006 143489341 -6027696 + ORR1E LTR MaLR 8 394 -6 9 1679 189 171 0 0 chr6 143489924 143489959 -6027078 + GA-rich Low_complexity Low_complexity 3 37 0 9 1679 283 269 21 97 chr6 143491157 143491301 -6025736 + ORR1E LTR MaLR 117 249 -110 9 1679 417 137 53 0 chr6 143491373 143491456 -6025581 + B1_Mm SINE Alu 62 147 0 9 1679 183 167 28 0 chr6 143492512 143492548 -6024489 + L2c LINE L2 3279 3315 -72 9 1679 326 80 20 0 chr6 143492751 143492801 -6024236 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 9 1679 186 43 0 0 chr6 143492843 143492866 -6024171 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1679 444 77 0 0 chr6 143492882 143492947 -6024090 + (TA)n Simple_repeat Simple_repeat 2 66 0 9 1679 3333 46 5 0 chr6 143493090 143493484 -6023553 - MTA_Mm LTR MaLR 0 396 1 9 1679 470 279 67 43 chr6 143493950 143494160 -6022877 + B3 SINE B2 2 216 0 9 1679 1551 203 51 19 chr6 143494692 143495063 -6021974 - MTC LTR MaLR -37 384 2 9 1679 401 312 13 34 chr6 143495079 143495228 -6021809 + ID_B1 SINE B4 71 216 -8 9 1679 405 0 0 0 chr6 143496789 143496834 -6020203 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1679 660 264 142 23 chr6 143496868 143497128 -6019909 - B4A SINE B4 0 292 2 9 1679 22 0 0 0 chr6 143498909 143498931 -6018106 + AT_rich Low_complexity Low_complexity 1 22 0 9 1679 419 309 32 116 chr6 143498972 143499188 -6017849 - B3A SINE B2 0 198 1 9 1679 259 219 29 186 chr6 143500159 143500173 -6016864 - B1F1 SINE Alu -1 148 136 1 1679 183 129 0 0 chr6 143500173 143500204 -6016833 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2 1679 297 242 29 154 chr6 143500204 143500355 -6016682 - B1F SINE Alu -14 135 5 1 1679 907 231 5 50 chr6 143500378 143500597 -6016440 - B3 SINE B2 -6 210 2 3 1679 303 267 46 37 chr6 143501526 143501635 -6015402 + PB1D7 SINE Alu 10 119 -1 4 1679 956 264 55 46 chr6 143502848 143503193 -6013844 + MTE2a LTR MaLR 32 379 0 5 1679 256 130 0 80 chr6 143503200 143503250 -6013787 - ORR1D2 LTR MaLR -2 377 332 6 1679 429 327 97 31 chr6 143503290 143503517 -6013520 - ORR1D2 LTR MaLR -128 242 1 6 1679 425 280 98 11 chr6 143503563 143503747 -6013290 - MER20 DNA MER1_type -18 201 2 7 1679 739 266 68 75 chr6 143503948 143504241 -6012796 + B4 SINE B4 2 292 0 8 1679 465 71 0 0 chr6 143504256 143504326 -6012711 + (CAGAGA)n Simple_repeat Simple_repeat 6 75 0 9 1679 25 31 0 0 chr6 143505195 143505227 -6011810 + AT_rich Low_complexity Low_complexity 1 32 0 1 1679 21 82 0 0 chr6 143505811 143505860 -6011177 + AT_rich Low_complexity Low_complexity 1 49 0 1 1679 513 246 111 24 chr6 143506207 143506415 -6010622 + RMER15 LTR ERVL 337 562 -13 1 1679 235 229 0 0 chr6 143507497 143507545 -6009492 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1679 261 279 23 0 chr6 143508306 143508392 -6008645 + (TATATG)n Simple_repeat Simple_repeat 5 92 0 1 1679 599 171 19 6 chr6 143508395 143508554 -6008483 + (TG)n Simple_repeat Simple_repeat 1 161 0 1 1679 329 348 47 47 chr6 143508571 143508782 -6008255 - B4A SINE B4 0 292 82 1 1679 441 0 0 0 chr6 143509042 143509091 -6007946 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1679 243 0 0 0 chr6 143509091 143509117 -6007920 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1679 196 111 22 22 chr6 143509121 143509167 -6007870 + (TCTG)n Simple_repeat Simple_repeat 1 46 0 1 1679 930 301 77 47 chr6 143509175 143509667 -6007370 - Lx8 LINE L1 -183 7290 6784 2 1679 269 198 36 36 chr6 143509667 143509751 -6007286 - B4A SINE B4 -208 84 1 2 1679 521 286 78 52 chr6 143510087 143510393 -6006644 + ORR1E LTR MaLR 4 317 -42 2 1679 601 224 23 29 chr6 143510515 143510690 -6006347 + RMER17B LTR ERVK 225 398 -560 2 1679 211 327 0 0 chr6 143510669 143510724 -6006313 - B4A SINE B4 -156 136 82 2 1679 333 0 0 0 chr6 143510984 143511021 -6006016 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1679 495 0 0 0 chr6 143511021 143511075 -6005962 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1679 187 114 22 22 chr6 143511079 143511124 -6005913 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 2 1679 257 282 39 0 chr6 143511124 143511202 -6005835 + ORR1E LTR MaLR 304 384 0 2 1679 6678 75 2 18 chr6 143511516 143512418 -6004619 - L1_Mm LINE L1 -63 5820 4933 2 1679 23 54 0 0 chr6 143512540 143512577 -6004460 + AT_rich Low_complexity Low_complexity 1 37 0 2 1679 258 241 113 26 chr6 143512577 143512692 -6004345 - L1M4 LINE L1 -2143 4003 3879 3 1679 539 131 0 27 chr6 143512708 143512818 -6004219 + (ATGGTG)n Simple_repeat Simple_repeat 6 112 0 3 1679 380 335 57 26 chr6 143512950 143513214 -6003823 - L1M4 LINE L1 -2567 3579 3308 3 1679 29 28 0 0 chr6 143513222 143513258 -6003779 + AT_rich Low_complexity Low_complexity 1 36 0 3 1679 245 250 17 0 chr6 143514103 143514163 -6002874 - HAL1 LINE L1 -885 1622 1562 3 1679 236 254 0 16 chr6 143514499 143514563 -6002474 - Lx7 LINE L1 -19 7677 7615 3 1679 652 281 88 18 chr6 143514658 143514886 -6002151 - Lx7 LINE L1 -312 7384 7141 3 1679 211 368 0 0 chr6 143515326 143515402 -6001635 - ID4 SINE ID 0 83 8 3 1679 1109 191 9 0 chr6 143515582 143515792 -6001245 - B3 SINE B2 0 216 5 3 1679 327 91 0 35 chr6 143515919 143515976 -6001061 - HAL1-3A_ME LINE L1 -828 2030 1976 3 1679 551 132 27 14 chr6 143515976 143516122 -6000915 + (TCTG)n Simple_repeat Simple_repeat 2 149 0 3 1679 267 179 18 36 chr6 143516704 143516814 -6000223 + CT-rich Low_complexity Low_complexity 2 109 0 3 1679 22 0 0 0 chr6 143517098 143517120 -5999917 + AT_rich Low_complexity Low_complexity 1 22 0 4 1679 865 236 65 10 chr6 143517123 143517324 -5999713 + B3 SINE B2 1 212 -4 4 1679 935 285 157 8 chr6 143517327 143517709 -5999328 - Lx8 LINE L1 -9 7464 7026 4 1679 1002 152 0 3 chr6 143522655 143522997 -5994040 + (CA)n Simple_repeat Simple_repeat 1 341 0 4 1679 189 0 0 0 chr6 143523231 143523252 -5993785 + (CCCCAG)n Simple_repeat Simple_repeat 4 24 0 4 1679 338 189 61 27 chr6 143523602 143523749 -5993288 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 4 1679 224 151 0 70 chr6 143523782 143523811 -5993226 + polypyrimidine Low_complexity Low_complexity 28 54 0 4 209 995 66 0 7 chr6 143523811 143523948 -5993089 + (TTC)n Simple_repeat Simple_repeat 1 136 0 4 1680 224 151 0 70 chr6 143523948 143523975 -5993062 + polypyrimidine Low_complexity Low_complexity 2 27 0 4 1680 543 220 8 33 chr6 143524084 143524206 -5992831 + PB1D9 SINE Alu 1 119 -1 4 1680 441 0 0 0 chr6 143524263 143524312 -5992725 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1680 660 13 0 0 chr6 143524760 143524837 -5992200 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 1680 678 255 117 58 chr6 143525303 143525666 -5991371 - MTE2a LTR MaLR -7 372 18 5 1680 699 316 53 32 chr6 143525845 143526129 -5990908 + B4A SINE B4 3 292 0 5 1680 217 254 30 0 chr6 143527082 143527149 -5989888 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 5 1680 327 146 0 0 chr6 143527152 143527207 -5989830 + (TCCCC)n Simple_repeat Simple_repeat 2 56 0 5 1680 657 103 26 0 chr6 143527296 143527413 -5989624 + (TA)n Simple_repeat Simple_repeat 1 120 0 5 1680 540 0 0 0 chr6 143529290 143529350 -5987687 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1680 966 278 65 121 chr6 143529426 143530011 -5987026 - Lx8 LINE L1 0 7473 6922 5 1680 35844 65 7 2 chr6 143531079 143537251 -5979786 - L1Md_F2 LINE L1 -1 6581 380 5 1680 646 313 57 73 chr6 143537631 143537945 -5979092 + MTEa LTR MaLR 1 309 -70 6 1680 890 294 16 8 chr6 143537978 143538228 -5978809 - B4 SINE B4 -2 290 39 6 1680 452 298 77 27 chr6 143539431 143539652 -5977385 - L1MA4A LINE L1 -395 5908 5677 6 1680 881 279 52 45 chr6 143540870 143541159 -5975878 + B4A SINE B4 2 292 0 6 1680 552 303 87 8 chr6 143542431 143542697 -5974340 - B4A SINE B4 -4 288 2 6 1680 207 0 0 0 chr6 143542767 143542790 -5974247 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1680 748 245 6 41 chr6 143544714 143544884 -5972153 - B3 SINE B2 -48 168 5 6 1680 275 261 259 8 chr6 143545052 143545183 -5971854 - RSINE1 SINE B4 0 165 2 6 1680 223 377 30 35 chr6 143545907 143546079 -5970958 - MIR SINE MIR -73 195 19 6 1680 1857 226 13 3 chr6 143546344 143546722 -5970315 - RLTR14 LTR ERV1 0 382 1 6 1680 405 0 0 0 chr6 143546810 143546855 -5970182 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 7 1680 845 244 50 86 chr6 143546980 143547258 -5969779 + B4 SINE B4 11 278 -14 7 1680 243 345 65 65 chr6 143549179 143549365 -5967672 + B3A SINE B2 3 188 -10 7 1680 194 62 31 0 chr6 143550018 143550050 -5966987 + (TTG)n Simple_repeat Simple_repeat 1 33 0 7 1680 266 288 0 0 chr6 143551764 143551844 -5965193 + MLT1D LTR MaLR 405 484 -21 7 1680 2027 259 22 12 chr6 143552771 143553263 -5963774 + Lx5 LINE L1 6554 7050 0 7 1680 265 210 123 57 chr6 143553579 143553685 -5963352 - LTR16D LTR ERVL -8 643 531 7 1680 348 24 0 0 chr6 143557993 143558034 -5959003 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1680 1347 58 0 0 chr6 143558851 143559073 -5957964 + (TTC)n Simple_repeat Simple_repeat 1 222 0 7 1680 403 202 9 9 chr6 143559075 143559190 -5957847 + CT-rich Low_complexity Low_complexity 1 115 0 7 1680 306 0 0 0 chr6 143559506 143559540 -5957497 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1680 590 303 11 22 chr6 143559742 143559924 -5957113 + B3A SINE B2 1 180 -18 8 1680 464 243 17 43 chr6 143560223 143560339 -5956698 - ID_B1 SINE B4 -1 223 111 8 1680 21 0 0 0 chr6 143560357 143560378 -5956659 + AT_rich Low_complexity Low_complexity 1 21 0 8 1680 391 229 92 0 chr6 143561077 143561186 -5955851 - B1F SINE Alu -1 148 30 8 1680 438 271 148 103 chr6 143561429 143561692 -5955345 - RLTR16 LTR ERVK -207 298 24 8 1680 266 304 0 0 chr6 143561695 143561764 -5955273 - B1F SINE Alu -80 69 1 8 1680 815 182 48 11 chr6 143561887 143562076 -5954961 - MTD LTR MaLR -223 196 1 8 1680 505 264 0 9 chr6 143562077 143562188 -5954849 - RSINE1 SINE B4 -51 114 5 8 1680 234 358 45 17 chr6 143562390 143562566 -5954471 + MER33 DNA MER1_type 4 184 -140 8 1680 387 298 0 5 chr6 143564214 143564328 -5952709 + B4 SINE B4 182 292 0 9 1680 255 103 0 0 chr6 143564342 143564381 -5952656 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 1680 209 338 0 0 chr6 143564441 143564512 -5952525 + (CATA)n Simple_repeat Simple_repeat 3 73 0 9 1680 297 109 0 0 chr6 143566703 143566749 -5950288 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1680 367 299 119 52 chr6 143566930 143567124 -5949913 + B4A SINE B4 5 211 -81 9 1680 621 282 66 19 chr6 143567128 143567399 -5949638 - ORR1E LTR MaLR -4 355 72 9 1680 1336 230 39 36 chr6 143569147 143569503 -5947534 - ORR1E LTR MaLR -2 357 1 9 1680 1062 45 0 0 chr6 143570083 143570215 -5946822 + (CA)n Simple_repeat Simple_repeat 2 133 0 9 1680 378 290 0 10 chr6 143570614 143570715 -5946322 - RSINE1 SINE B4 -63 102 3 9 1680 459 0 0 0 chr6 143570819 143570870 -5946167 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1680 372 293 96 25 chr6 143571533 143571823 -5945214 - MTD LTR MaLR -2 417 57 1 1680 537 204 56 0 chr6 143571850 143571958 -5945079 - RSINE1 SINE B4 -48 117 4 1 1680 25 75 0 0 chr6 143572354 143572407 -5944630 + AT_rich Low_complexity Low_complexity 1 53 0 1 1680 723 170 77 55 chr6 143572416 143572597 -5944440 + B2_Mm2 SINE B2 2 186 -9 1 1680 749 137 0 46 chr6 143572609 143572739 -5944298 + B1_Mur4 SINE Alu 3 126 -24 1 1680 401 216 3 11 chr6 143572764 143572868 -5944169 + PB1D10 SINE Alu 15 117 0 1 1680 2910 94 15 0 chr6 143572965 143573359 -5943678 - MTB LTR MaLR 0 400 1 1 1680 417 325 69 68 chr6 143573393 143573984 -5943053 + L1ME3 LINE L1 5374 5965 -197 1 1680 856 305 38 11 chr6 143574152 143574417 -5942620 + B4A SINE B4 19 290 -2 1 1680 354 100 0 0 chr6 143576538 143576598 -5940439 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1680 333 0 0 0 chr6 143576982 143577019 -5940018 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1680 579 257 31 46 chr6 143577066 143577262 -5939775 - B3A SINE B2 -4 194 2 1 1680 1475 232 35 20 chr6 143577354 143577754 -5939283 + L1M2 LINE L1 4526 4931 -1212 1 1680 231 208 57 0 chr6 143577761 143577814 -5939223 + L1_Rod LINE L1 5109 5164 -683 1 1680 362 236 55 141 chr6 143577852 143577980 -5939057 + L1M2 LINE L1 5445 5561 -739 1 1680 513 272 50 45 chr6 143577964 143578371 -5938666 + Lx9 LINE L1 5701 6280 -1364 1 1680 377 180 31 0 chr6 143578392 143578520 -5938517 + (CA)n Simple_repeat Simple_repeat 2 133 0 1 1680 391 303 37 0 chr6 143578525 143578634 -5938403 + Lx9 LINE L1 6358 6470 -1174 1 1680 515 255 0 14 chr6 143578637 143578780 -5938257 + CT-rich Low_complexity Low_complexity 1 141 0 1 1680 479 173 9 0 chr6 143578780 143578890 -5938147 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 1 1680 594 298 38 19 chr6 143578896 143579105 -5937932 + Lx9 LINE L1 6493 6705 -939 1 1680 1464 296 116 47 chr6 143579131 143579899 -5937138 + Lx9 LINE L1 6618 7438 -206 1 1680 293 267 77 89 chr6 143580432 143580772 -5936265 + L1MEg LINE L1 1380 1723 -4477 1 1680 452 228 16 0 chr6 143580871 143580994 -5936043 + (CATATA)n Simple_repeat Simple_repeat 4 128 0 1 1680 200 217 16 32 chr6 143581153 143581215 -5935822 + GA-rich Low_complexity Low_complexity 3 63 0 1 1680 405 299 146 0 chr6 143584065 143584229 -5932808 - MTEa LTR MaLR -1 378 191 1 1680 294 236 41 82 chr6 143585349 143585446 -5931591 + PB1D7 SINE Alu 27 119 -1 1 1680 427 134 0 24 chr6 143585451 143585535 -5931502 + GA-rich Low_complexity Low_complexity 4 85 0 1 1680 569 232 51 0 chr6 143585578 143585716 -5931321 - B1F1 SINE Alu 0 149 5 1 1680 948 84 0 0 chr6 143585920 143586051 -5930986 + (CA)n Simple_repeat Simple_repeat 1 131 0 1 1680 710 179 6 0 chr6 143586549 143586717 -5930320 + (TG)n Simple_repeat Simple_repeat 1 169 0 1 1680 441 337 54 42 chr6 143586916 143587229 -5929808 - L1MEf LINE L1 -4985 1215 899 1 1680 1323 88 0 1 chr6 143587815 143588032 -5929005 + BGLII_A LTR ERVK 207 445 0 1 1680 1329 93 38 0 chr6 143588422 143588605 -5928432 - B2_Mm2 SINE B2 -4 191 2 1 1680 261 0 0 0 chr6 143590405 143590434 -5926603 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1680 270 0 0 0 chr6 143590434 143590463 -5926574 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1680 444 51 0 0 chr6 143591095 143591154 -5925883 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1680 1487 167 4 19 chr6 143592046 143592315 -5924722 + MTC LTR MaLR 157 421 0 1 1680 959 104 17 6 chr6 143592650 143592824 -5924213 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1680 522 46 0 0 chr6 143592847 143592912 -5924125 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1 1680 303 200 150 0 chr6 143592912 143592992 -5924045 - RSINE1 SINE B4 -70 95 4 1 1680 540 229 10 87 chr6 143594661 143594857 -5922180 + B3A SINE B2 2 182 -16 1 1680 498 152 0 0 chr6 143594857 143594949 -5922088 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 1680 30 45 0 0 chr6 143594962 143595006 -5922031 + AT_rich Low_complexity Low_complexity 1 44 0 1 1680 26 30 0 0 chr6 143595100 143595133 -5921904 + AT_rich Low_complexity Low_complexity 1 33 0 1 1680 930 217 43 10 chr6 143595439 143595648 -5921389 - B3 SINE B2 0 216 1 1 1680 544 235 273 18 chr6 143596222 143596517 -5920520 - MTEb LTR MaLR -7 372 3 1 1680 813 261 15 0 chr6 143596719 143596918 -5920119 - B3 SINE B2 -11 205 4 1 1680 189 0 0 0 chr6 143597564 143597585 -5919452 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1680 662 246 130 49 chr6 143598120 143598447 -5918590 - MTD LTR MaLR -7 372 1 1 1680 642 254 14 14 chr6 143598486 143598630 -5918407 + ID_B1 SINE B4 81 224 0 1 1680 218 210 95 16 chr6 143598980 143599043 -5917994 + PB1D10 SINE Alu 43 110 -7 1 1680 243 188 0 72 chr6 143599044 143599113 -5917924 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 1 1680 427 297 108 0 chr6 143599317 143599512 -5917525 + Charlie10 DNA MER1_type 999 1214 -1608 1 1680 705 312 121 7 chr6 143599675 143599956 -5917081 - Lx8 LINE L1 -200 7273 6961 1 1680 1629 167 43 55 chr6 143600207 143600536 -5916501 - ORR1A4 LTR MaLR 0 329 5 1 1680 29 47 0 0 chr6 143600693 143600736 -5916301 + AT_rich Low_complexity Low_complexity 1 43 0 1 1680 609 269 12 30 chr6 143600985 143601150 -5915887 + RSINE1 SINE B4 4 165 0 1 1680 348 127 0 0 chr6 143601157 143601212 -5915825 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1680 247 119 0 23 chr6 143601475 143601518 -5915519 - RLTR25B LTR ERVK 0 1103 1062 1 1680 3891 158 56 33 chr6 143601550 143602260 -5914777 - RLTR25B LTR ERVK -191 837 119 1 1680 282 29 0 0 chr6 143602260 143602295 -5914742 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1680 3891 158 56 33 chr6 143602295 143602402 -5914635 - RLTR25B LTR ERVK -910 118 3 1 1680 1285 186 171 10 chr6 143602840 143603139 -5913898 + ORR1B2 LTR MaLR 21 367 0 1 1680 228 264 13 65 chr6 143604262 143604339 -5912698 - RSINE1 SINE B4 -63 102 30 1 1680 491 62 0 0 chr6 143604405 143604470 -5912567 - PB1D10 SINE Alu -14 103 39 1 1680 638 294 38 45 chr6 143604477 143604766 -5912271 - RMER15 LTR ERVL -14 561 275 1 1680 27 29 0 0 chr6 143606411 143606445 -5910592 + AT_rich Low_complexity Low_complexity 1 34 0 1 1680 432 228 11 0 chr6 143607070 143607255 -5909782 + (CA)n Simple_repeat Simple_repeat 1 187 0 1 1680 510 307 14 0 chr6 143608015 143608155 -5908882 - RSINE1 SINE B4 -21 144 3 1 1680 1015 117 0 0 chr6 143608690 143608827 -5908210 + B1_Mus1 SINE Alu 3 139 -9 1 1680 225 0 0 0 chr6 143608827 143608852 -5908185 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1680 1851 225 16 47 chr6 143609506 143609995 -5907042 + RMER19C LTR ERVK 138 611 0 1 1680 361 225 38 0 chr6 143610719 143610799 -5906238 - PB1D10 SINE Alu -12 105 23 1 1680 563 221 89 0 chr6 143610730 143610888 -5906149 - ID_B1 SINE B4 -52 172 1 1 1680 532 216 128 0 chr6 143611324 143611449 -5905588 - B3A SINE B2 -57 141 1 1 1680 268 254 7 71 chr6 143611556 143611696 -5905341 + G-rich Low_complexity Low_complexity 3 133 0 1 1680 22 0 0 0 chr6 143612433 143612455 -5904582 + AT_rich Low_complexity Low_complexity 1 22 0 1 1680 180 0 0 0 chr6 143613135 143613155 -5903882 + (TATG)n Simple_repeat Simple_repeat 3 22 0 1 1680 288 143 0 0 chr6 143613177 143613233 -5903804 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1680 549 0 0 0 chr6 143613233 143613294 -5903743 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1680 458 294 171 57 chr6 143614603 143615335 -5901702 - L1MEc LINE L1 -5548 852 38 1 1680 380 308 141 49 chr6 143615374 143615678 -5901359 + MLT1A0 LTR MaLR 34 365 0 1 1680 1589 191 85 18 chr6 143615856 143616244 -5900793 + MTD LTR MaLR 4 417 -2 1 1680 586 292 130 16 chr6 143616885 143617132 -5899905 + B4 SINE B4 2 276 -16 1 1680 180 0 0 0 chr6 143617203 143617223 -5899814 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1680 276 77 0 0 chr6 143617223 143617261 -5899776 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1680 364 254 72 24 chr6 143618210 143618335 -5898702 + MLT1A1 LTR MaLR 276 406 -2 1 1680 270 293 139 35 chr6 143618357 143618530 -5898507 + HERVL40-int LTR ERVL 2687 2877 -2653 1 1680 219 88 0 0 chr6 143618632 143618666 -5898371 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 1 1680 6348 60 0 0 chr6 143618712 143619489 -5897548 + L1Md_F2 LINE L1 4810 5586 -297 1 1680 8500 36 1 2 chr6 143619489 143620485 -5896552 + L1Md_F2 LINE L1 5587 6581 -1 1 1680 303 345 18 0 chr6 143620604 143620714 -5896323 + HERVL40-int LTR ERVL 3748 3859 -1671 1 1680 288 336 54 28 chr6 143621854 143622025 -5895012 + LTR40a LTR ERVL 236 466 -53 1 1680 347 250 0 12 chr6 143622429 143622510 -5894527 + ID4_ SINE ID 1 80 -3 1 1680 324 188 0 59 chr6 143623230 143623332 -5893705 + (CCTTG)n Simple_repeat Simple_repeat 5 100 0 1 1680 432 266 152 25 chr6 143624749 143624953 -5892084 + B4A SINE B4 8 237 -55 1 1680 258 32 0 0 chr6 143625143 143625174 -5891863 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1680 1229 14 0 0 chr6 143625174 143625312 -5891725 - B1_Mus2 SINE Alu -9 138 1 1 1680 447 149 0 0 chr6 143625582 143625689 -5891348 + (T)n Simple_repeat Simple_repeat 1 107 0 1 1680 329 280 103 0 chr6 143626307 143626414 -5890623 + PB1 SINE Alu 5 122 -5 1 1680 223 400 0 0 chr6 143626426 143626506 -5890531 + ID4_ SINE ID 2 81 -2 1 1680 805 317 69 82 chr6 143627657 143628365 -5888672 - L1MA8 LINE L1 -267 6024 5326 1 1680 207 0 0 0 chr6 143628460 143628483 -5888554 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1680 522 0 0 0 chr6 143628483 143628540 -5888497 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1680 264 235 0 0 chr6 143628848 143628916 -5888121 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1680 658 156 11 39 chr6 143628924 143629104 -5887933 + (TATG)n Simple_repeat Simple_repeat 4 178 0 1 1680 1368 293 101 64 chr6 143629316 143630147 -5886890 + L1MB7 LINE L1 5313 6174 -10 2 1680 1691 262 126 37 chr6 143631750 143632369 -5884668 - Lx8 LINE L1 -19 7454 6781 2 1680 209 315 54 36 chr6 143632605 143632717 -5884320 - MIR3 SINE MIR -14 194 81 2 1680 423 0 0 0 chr6 143634086 143634133 -5882904 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1680 396 0 0 0 chr6 143634133 143634176 -5882861 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1680 578 257 68 21 chr6 143635456 143635647 -5881390 + B3 SINE B2 1 200 -16 2 1680 297 140 0 0 chr6 143635666 143635723 -5881314 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1680 33 0 0 0 chr6 143638336 143638369 -5878668 + AT_rich Low_complexity Low_complexity 1 33 0 2 1680 254 266 14 0 chr6 143638770 143638913 -5878124 + (CACAG)n Simple_repeat Simple_repeat 3 147 0 2 1680 603 0 0 0 chr6 143640117 143640184 -5876853 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1680 1191 43 0 0 chr6 143640185 143640324 -5876713 + B1_Mus1 SINE Alu 1 139 -9 2 1680 183 42 0 0 chr6 143640324 143640348 -5876689 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1680 351 0 0 0 chr6 143640354 143640393 -5876644 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1680 461 248 32 25 chr6 143641294 143641452 -5875585 - MTE2a LTR MaLR -21 398 241 2 1680 631 100 53 0 chr6 143641452 143641602 -5875435 + (TGAA)n Simple_repeat Simple_repeat 3 160 0 2 1680 400 163 11 11 chr6 143641591 143641678 -5875359 + GA-rich Low_complexity Low_complexity 2 88 0 2 1680 412 316 38 50 chr6 143641698 143641929 -5875108 - MTE2a LTR MaLR -186 193 3 2 1680 252 0 0 0 chr6 143642791 143642819 -5874218 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1680 360 0 0 0 chr6 143642819 143642858 -5874179 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1680 3719 139 3 28 chr6 143644043 143644649 -5872388 + Lx LINE L1 6062 6652 -2 2 1680 657 106 0 0 chr6 143644862 143644966 -5872071 + (CATA)n Simple_repeat Simple_repeat 1 104 0 2 1680 405 0 0 0 chr6 143646008 143646053 -5870984 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1680 188 34 0 33 chr6 143647053 143647083 -5869954 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1680 415 160 21 0 chr6 143647929 143648023 -5869014 + (TG)n Simple_repeat Simple_repeat 1 96 0 2 1680 582 278 140 72 chr6 143648023 143648287 -5868750 - B4A SINE B4 0 292 11 2 1680 742 110 48 9 chr6 143648324 143648554 -5868483 + (TCTA)n Simple_repeat Simple_repeat 1 239 0 2 1680 314 286 0 79 chr6 143649126 143649240 -5867797 + MT2B LTR ERVL 151 255 -346 2 1680 732 150 38 0 chr6 143649151 143649284 -5867753 + B1_Mur4 SINE Alu 13 150 0 2 1680 738 234 25 25 chr6 143649475 143649672 -5867365 + B3 SINE B2 15 211 -5 2 1680 301 240 9 71 chr6 143650909 143651021 -5866016 - PB1D10 SINE Alu -11 106 2 2 1680 267 31 0 0 chr6 143651441 143651473 -5865564 + (CATAT)n Simple_repeat Simple_repeat 2 33 0 2 1680 22 0 0 0 chr6 143651489 143651511 -5865526 + AT_rich Low_complexity Low_complexity 1 22 0 2 1680 182 91 0 29 chr6 143651872 143651906 -5865131 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1680 373 293 289 0 chr6 143652548 143652773 -5864264 - B4A SINE B4 0 292 3 2 1680 216 0 0 0 chr6 143654093 143654117 -5862920 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1680 26 0 0 0 chr6 143654415 143654441 -5862596 + AT_rich Low_complexity Low_complexity 1 26 0 2 1681 207 0 0 0 chr6 143655054 143655077 -5861960 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2 1681 321 292 21 0 chr6 143656370 143656466 -5860571 + B4A SINE B4 1 98 -194 2 1681 458 229 0 6 chr6 143656572 143656752 -5860285 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1681 804 246 44 0 chr6 143657523 143657726 -5859311 + B3 SINE B2 4 215 -1 2 1681 234 284 171 29 chr6 143658291 143658396 -5858641 - B1F1 SINE Alu -18 131 12 2 1681 586 265 15 0 chr6 143658714 143658850 -5858187 - B1_Mur2 SINE Alu -9 140 3 2 1681 270 271 14 28 chr6 143658986 143659058 -5857979 - PB1D10 SINE Alu -45 72 2 2 1681 860 246 14 19 chr6 143661869 143662076 -5854961 + B3 SINE B2 1 206 -10 2 1681 1089 82 0 13 chr6 143664060 143664209 -5852828 + B1_Mus1 SINE Alu 1 147 -1 2 1681 25 0 0 0 chr6 143664223 143664248 -5852789 + AT_rich Low_complexity Low_complexity 1 25 0 2 1681 1834 120 39 0 chr6 143664254 143664537 -5852500 - Lx3B LINE L1 -1 6972 6679 2 1681 189 0 0 0 chr6 143665072 143665093 -5851944 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 1681 705 226 30 6 chr6 143665116 143665281 -5851756 - B3A SINE B2 -24 174 6 2 1681 580 282 53 47 chr6 143665603 143665793 -5851244 + B3 SINE B2 3 193 -5 2 1681 269 330 40 0 chr6 143666055 143666155 -5850882 - PB1D7 SINE Alu -16 104 1 2 1681 368 362 15 38 chr6 143667016 143667148 -5849889 + B1F SINE Alu 15 143 -6 2 1681 541 241 8 17 chr6 143667580 143667698 -5849339 - PB1D7 SINE Alu -1 119 3 2 1681 2691 151 47 7 chr6 143667988 143668435 -5848602 - Lx2 LINE L1 -4 6993 6529 2 1681 512 191 6 0 chr6 143668573 143668751 -5848286 + (CA)n Simple_repeat Simple_repeat 1 179 0 2 1681 390 42 0 0 chr6 143668751 143668799 -5848238 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 1681 309 179 0 0 chr6 143669134 143669191 -5847846 + RLTR20A LTR ERVK 499 578 0 2 1681 1554 142 4 4 chr6 143669233 143669459 -5847578 - URR1A DNA MER1_type 0 226 1 2 1681 459 52 0 0 chr6 143669714 143669772 -5847265 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1681 981 128 0 0 chr6 143669772 143669951 -5847086 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1681 509 281 108 35 chr6 143671617 143671820 -5845217 + RLTR17 LTR ERVK 184 401 -291 2 1681 25 51 0 0 chr6 143673519 143673558 -5843479 + AT_rich Low_complexity Low_complexity 1 39 0 2 1681 285 259 0 12 chr6 143676278 143676360 -5840677 - Lx7 LINE L1 -11 7685 7605 2 1681 764 283 9 22 chr6 143676468 143676692 -5840345 - Lx7 LINE L1 -358 7338 7118 2 1681 1005 254 14 9 chr6 143676698 143676913 -5840124 - B3 SINE B2 0 216 1 2 1681 22 0 0 0 chr6 143677234 143677256 -5839781 + AT_rich Low_complexity Low_complexity 1 22 0 2 1681 803 265 9 50 chr6 143677513 143677735 -5839302 + B3 SINE B2 1 213 -3 2 1681 667 118 0 0 chr6 143677876 143677969 -5839068 - 4.5SRNA scRNA scRNA -1 93 1 2 1681 737 32 0 0 chr6 143677973 143678068 -5838969 + L1Md_F2 LINE L1 6475 6569 -13 2 1681 505 262 30 80 chr6 143678432 143678598 -5838439 + B3A SINE B2 2 160 -35 2 1681 564 29 0 0 chr6 143678598 143678668 -5838369 + (CA)n Simple_repeat Simple_repeat 2 71 0 2 1681 453 262 30 80 chr6 143678668 143678700 -5838337 + B2_Mm2 SINE B2 161 190 -5 2 1681 327 264 168 32 chr6 143678863 143678988 -5838049 + MLT1G LTR MaLR 10 151 -440 2 1681 191 36 36 0 chr6 143679250 143679278 -5837759 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 2 1681 834 166 0 0 chr6 143679643 143679818 -5837219 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 1681 45 83 0 0 chr6 143680436 143680544 -5836493 + AT_rich Low_complexity Low_complexity 1 108 0 2 1681 211 122 20 20 chr6 143680544 143680594 -5836443 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1681 568 281 135 23 chr6 143680839 143681098 -5835939 + B4A SINE B4 1 288 -4 2 1681 220 267 0 16 chr6 143681099 143681160 -5835877 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1681 249 260 0 0 chr6 143681224 143681274 -5835763 + tRNA-Ala-GCY_ tRNA tRNA 3 52 -23 2 1681 1220 219 133 30 chr6 143681890 143682252 -5834785 - MTD LTR MaLR -2 417 19 2 1681 1255 177 23 32 chr6 143682706 143682922 -5834115 + B3 SINE B2 3 216 0 2 1681 923 314 14 18 chr6 143683211 143683496 -5833541 + B4 SINE B4 5 288 -4 2 1681 261 0 0 0 chr6 143683529 143683558 -5833479 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1681 1232 75 0 0 chr6 143684045 143684192 -5832845 + B1_Mus2 SINE Alu 1 147 0 2 1681 210 37 0 0 chr6 143684214 143684241 -5832796 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2 1681 737 297 96 0 chr6 143685268 143685497 -5831540 + ORR1E LTR MaLR 73 323 -36 2 1681 524 257 185 12 chr6 143686938 143687185 -5829852 + B4 SINE B4 1 290 -2 2 1681 603 0 0 0 chr6 143687192 143687259 -5829778 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1681 180 0 0 0 chr6 143687367 143687387 -5829650 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1681 445 283 242 32 chr6 143687639 143687949 -5829088 - MTEb LTR MaLR -4 375 1 2 1681 485 343 40 4 chr6 143688889 143689138 -5827899 - L1MC4 LINE L1 -1090 6952 6695 2 1681 1130 209 24 0 chr6 143689269 143689480 -5827557 - B3 SINE B2 0 216 1 2 1681 717 169 104 14 chr6 143689983 143690146 -5826891 + URR1B DNA MER1_type 5 197 -28 2 1681 867 298 30 21 chr6 143690201 143690649 -5826388 - L1MC4 LINE L1 -2266 5616 5133 2 1681 1959 141 68 50 chr6 143691405 143691512 -5825525 - Lx LINE L1 -21 6633 6534 2 1681 207 0 0 0 chr6 143691512 143691535 -5825502 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 2 1681 1959 141 68 50 chr6 143691535 143691824 -5825213 - Lx LINE L1 -121 6533 6232 2 1681 204 182 12 105 chr6 143691824 143691910 -5825127 + T-rich Low_complexity Low_complexity 1 78 0 2 1681 1050 119 0 0 chr6 143691924 143692058 -5824979 - B1_Mus2 SINE Alu -13 134 1 2 1681 624 100 0 11 chr6 143692058 143692143 -5824894 - Lx LINE L1 -411 6243 6159 2 1681 422 309 119 0 chr6 143692785 143692911 -5824126 + B1_Mur1 SINE Alu 2 142 -7 2 1681 240 333 52 78 chr6 143692913 143693105 -5823932 - L2a LINE L2 -139 3287 3101 2 1681 433 265 222 6 chr6 143693271 143693442 -5823595 + ORR1E LTR MaLR 1 208 -151 2 1681 214 352 19 0 chr6 143693576 143693681 -5823356 - L2a LINE L2 -784 2635 2529 2 1681 526 247 30 18 chr6 143693887 143694056 -5822981 - MLT1B LTR MaLR -219 171 1 2 1681 221 351 143 34 chr6 143694087 143694582 -5822455 - L2a LINE L2 -952 2467 1919 2 1681 680 218 48 0 chr6 143694628 143694775 -5822262 + B3 SINE B2 2 155 -61 2 1681 231 294 85 21 chr6 143694834 143694928 -5822109 + MLT1K LTR MaLR 204 303 -292 3 1681 416 286 29 22 chr6 143695255 143695391 -5821646 + RMER15 LTR ERVL 423 559 -16 3 1681 25 31 0 0 chr6 143697866 143697898 -5819139 + AT_rich Low_complexity Low_complexity 1 32 0 3 1681 847 274 49 72 chr6 143698494 143698736 -5818301 + MTE2a LTR MaLR 18 264 -155 3 1681 1305 78 0 0 chr6 143698736 143698915 -5818122 + (TC)n Simple_repeat Simple_repeat 2 180 0 3 1681 847 257 43 77 chr6 143698915 143699039 -5817998 + MTE2a LTR MaLR 212 345 -34 3 1681 1243 262 101 14 chr6 143699083 143699428 -5817609 - MTD LTR MaLR -6 413 39 3 1681 2783 266 59 21 chr6 143700166 143701049 -5815988 + RCHARR1 DNA MER1_type 2 917 -57 3 1681 1914 264 28 18 chr6 143701049 143701550 -5815487 - Lx7 LINE L1 -393 7303 6798 3 1681 688 263 91 0 chr6 143704348 143704534 -5812503 + ID_B1 SINE B4 2 204 -20 3 1681 1168 264 101 17 chr6 143704923 143705281 -5811756 - MTD LTR MaLR -14 405 18 3 1681 422 354 70 19 chr6 143705642 143705855 -5811182 - MER58A DNA MER1_type 0 224 1 3 1681 447 208 47 9 chr6 143706663 143706770 -5810267 + MTE2b LTR MaLR 263 373 -6 3 1681 393 303 133 53 chr6 143706913 143707219 -5809818 - RMER20B LTR ERVK -228 399 80 3 1681 356 200 14 36 chr6 143707950 143708090 -5808947 + (TTA)n Simple_repeat Simple_repeat 2 138 0 3 1681 189 0 0 0 chr6 143708366 143708387 -5808650 + (CAAAT)n Simple_repeat Simple_repeat 2 22 0 3 1681 492 214 132 23 chr6 143709178 143709307 -5807730 - B1F2 SINE Alu 0 149 7 3 1681 288 387 0 0 chr6 143710167 143710273 -5806764 + PB1D7 SINE Alu 4 109 -11 3 1681 684 284 136 5 chr6 143711119 143711435 -5805602 - ORR1E LTR MaLR 0 379 1 3 1681 916 131 0 0 chr6 143712005 143712142 -5804895 - RMER6C LTR ERVK 0 690 554 3 1681 1477 157 17 8 chr6 143712159 143712397 -5804640 - RMER6D LTR ERVK 0 720 481 3 1681 1090 181 102 0 chr6 143712590 143712795 -5804242 - URR1A DNA MER1_type 0 226 1 3 1681 410 312 105 54 chr6 143712909 143713224 -5803813 + MLT1B LTR MaLR 60 390 0 3 1681 305 173 0 37 chr6 143713407 143713461 -5803576 + MTC LTR MaLR 1 52 -369 3 1681 1434 147 12 8 chr6 143713459 143713699 -5803338 + MTC LTR MaLR 181 421 0 3 1681 707 283 32 28 chr6 143714427 143714645 -5802392 + MLT1A0 LTR MaLR 147 365 0 3 1681 403 112 8 57 chr6 143715771 143715894 -5801143 + (TA)n Simple_repeat Simple_repeat 1 117 0 3 1681 405 0 0 0 chr6 143715894 143715939 -5801098 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1681 554 269 221 14 chr6 143716733 143716955 -5800082 + RMER15 LTR ERVL 294 561 -14 3 1681 720 0 0 0 chr6 143717363 143717443 -5799594 + (GA)n Simple_repeat Simple_repeat 2 81 0 3 1681 236 118 43 14 chr6 143717792 143717861 -5799176 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1681 753 281 103 27 chr6 143719248 143719511 -5797526 + B4 SINE B4 10 292 0 3 1681 223 341 37 0 chr6 143720759 143720841 -5796196 - L2 LINE L2 -2933 486 402 3 1681 738 321 24 12 chr6 143721235 143721484 -5795553 - LFSINE_Vert SINE SINE -155 304 53 3 1681 937 211 21 16 chr6 143721945 143722138 -5794899 - B3 SINE B2 0 216 23 3 1681 3391 56 2 0 chr6 143722558 143722951 -5794086 + MTA_Mm LTR MaLR 3 396 0 3 1681 2701 152 56 30 chr6 143723135 143723636 -5793401 + RLTR31A_Mm LTR ERVK 1 514 -70 3 1681 252 0 0 0 chr6 143723640 143723668 -5793369 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1681 39651 41 7 1 chr6 143723707 143729977 -5787060 - L1Md_T LINE L1 -1 6581 331 3 1681 256 198 122 12 chr6 143729979 143730061 -5786976 + RLTR31A_Mm LTR ERVK 467 557 0 3 1681 297 0 0 0 chr6 143730435 143730468 -5786569 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1681 396 0 0 0 chr6 143730468 143730511 -5786526 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1681 228 328 85 62 chr6 143730574 143730704 -5786333 - MT2A LTR ERVL -103 430 298 3 1681 285 266 83 68 chr6 143730863 143730996 -5786041 - MTEa LTR MaLR -194 185 51 3 1681 256 172 31 51 chr6 143731017 143731115 -5785922 + (TATATG)n Simple_repeat Simple_repeat 5 100 0 3 1681 1557 17 0 0 chr6 143731390 143731570 -5785467 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 3 1681 197 132 0 26 chr6 143731573 143731612 -5785425 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1681 600 319 144 38 chr6 143731871 143732295 -5784742 + RCHARR1 DNA MER1_type 1 469 -505 3 1681 504 295 45 22 chr6 143732292 143732514 -5784523 + RCHARR1 DNA MER1_type 748 974 0 3 1681 498 257 79 53 chr6 143732687 143732876 -5784161 - B3A SINE B2 0 198 5 3 1681 385 326 53 0 chr6 143735220 143735352 -5781685 + B1F2 SINE Alu 11 149 0 3 1681 965 275 11 8 chr6 143735360 143735598 -5781439 + B4 SINE B4 8 241 -51 3 1681 27 0 0 0 chr6 143735666 143735693 -5781344 + AT_rich Low_complexity Low_complexity 1 27 0 3 1681 660 214 35 85 chr6 143735793 143735992 -5781045 - B3A SINE B2 -27 189 1 3 1681 296 300 0 0 chr6 143737167 143737237 -5779800 + B1F SINE Alu 74 143 -6 3 1681 2227 138 113 83 chr6 143737393 143737826 -5779211 - RLTR41 LTR ERV1 0 446 1 3 1681 498 33 0 0 chr6 143737902 143737962 -5779075 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1681 318 134 0 0 chr6 143737962 143738029 -5779008 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1681 673 286 5 62 chr6 143738953 143739147 -5777890 - B3A SINE B2 -14 184 2 3 1681 266 333 51 34 chr6 143739879 143739997 -5777040 - B4 SINE B4 -87 205 86 3 1681 236 77 0 25 chr6 143740328 143740368 -5776669 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 3 1681 921 57 8 8 chr6 143740484 143740607 -5776430 + B1_Mm SINE Alu 25 147 0 3 1681 226 67 0 43 chr6 143740607 143740654 -5776383 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 3 1681 189 222 0 0 chr6 143741233 143741296 -5775741 + CT-rich Low_complexity Low_complexity 2 64 0 3 1681 952 195 33 23 chr6 143741521 143741736 -5775301 - ORR1D1 LTR MaLR -157 217 1 3 1681 425 252 44 18 chr6 143742841 143742954 -5774083 + PB1D10 SINE Alu 1 116 -1 3 1681 1278 242 124 11 chr6 143743317 143743689 -5773348 + MTD LTR MaLR 6 419 0 3 1681 1768 236 99 94 chr6 143743689 143744411 -5772626 + MTD-int LTR MaLR 1 811 -447 3 1681 2936 269 94 44 chr6 143744411 143744633 -5772404 - L1_Rod LINE L1 -442 5405 5178 3 1681 225 0 0 0 chr6 143744633 143744658 -5772379 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 1681 636 26 0 0 chr6 143744658 143744735 -5772302 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1681 2936 269 94 44 chr6 143744735 143745884 -5771153 - L1_Rod LINE L1 -670 5177 3966 3 1681 4558 199 53 32 chr6 143745885 143746917 -5770120 - Lx7 LINE L1 0 7696 6643 3 1681 1725 275 83 55 chr6 143746915 143747716 -5769321 - L1_Rod LINE L1 -1872 3975 3168 3 1681 258 32 0 0 chr6 143747716 143747747 -5769290 + (TTA)n Simple_repeat Simple_repeat 3 33 0 3 1681 1725 275 83 55 chr6 143747747 143747922 -5769115 - L1_Rod LINE L1 -2680 3167 2972 3 1681 2135 102 12 64 chr6 143748289 143748634 -5768403 + ORR1A2 LTR MaLR 1 327 0 3 1681 1816 127 77 0 chr6 143748634 143748934 -5768103 + ORR1A2-int LTR MaLR 1 323 -1640 3 1681 1429 161 12 0 chr6 143748934 143749189 -5767848 - L1Md_F LINE L1 -5634 885 628 3 1681 563 253 93 88 chr6 143749161 143749365 -5767672 - L1Md_F LINE L1 -5783 736 573 3 1681 360 182 62 49 chr6 143749407 143749488 -5767549 - L1VL1 LINE L1 -6065 357 276 3 1681 2731 152 50 4 chr6 143749511 143749536 -5767501 + ORR1A2-int LTR MaLR 281 308 -1655 3 1681 6361 61 7 3 chr6 143749536 143750295 -5766742 + L1_Mus2 LINE L1 5804 6565 -1 3 1681 2731 152 50 4 chr6 143750295 143750772 -5766265 + ORR1A2-int LTR MaLR 309 805 -1158 3 1681 997 173 204 76 chr6 143750591 143750841 -5766196 + MT2B LTR ERVL 6 287 -314 3 1681 7100 141 40 9 chr6 143750799 143752008 -5765029 + ORR1A2-int LTR MaLR 718 1963 0 3 1681 2313 123 6 0 chr6 143752008 143752333 -5764704 + ORR1A2 LTR MaLR 1 327 0 3 1681 3996 47 29 92 chr6 143752355 143752899 -5764138 + RLTR1B LTR ERV1 1 510 -2 3 1681 297 197 0 0 chr6 143752929 143752990 -5764047 + CT-rich Low_complexity Low_complexity 3 63 0 3 1681 1860 269 34 34 chr6 143753362 143753383 -5763654 - L1_Rod LINE L1 -2869 2978 2964 3 1681 7007 56 9 0 chr6 143753383 143754184 -5762853 + RLTR13C2 LTR ERVK 1 808 0 3 1681 1860 269 34 34 chr6 143754184 143754840 -5762197 - L1_Rod LINE L1 -2884 2963 2301 3 1681 733 175 7 4 chr6 143754877 143755021 -5762016 + L1Md_F LINE L1 380 629 -5990 3 1681 32961 77 7 8 chr6 143755023 143760313 -5756724 + L1Md_F2 LINE L1 301 5586 -297 3 1681 8756 36 1 16 chr6 143760313 143761310 -5755727 + L1Md_F2 LINE L1 5587 6568 -14 3 1681 792 327 57 19 chr6 143761310 143761734 -5755303 - L1_Rod LINE L1 -3592 2255 1816 3 1681 327 286 82 25 chr6 143761734 143761892 -5755145 + MTD-int LTR MaLR 1092 1258 0 3 1681 1356 224 113 22 chr6 143761892 143762271 -5754766 + MTD LTR MaLR 1 398 -21 3 1681 294 301 31 31 chr6 143762712 143762839 -5754198 + B3A SINE B2 17 143 -55 3 1681 1126 13 33 0 chr6 143762850 143763002 -5754035 + (CA)n Simple_repeat Simple_repeat 1 157 0 3 1681 994 256 82 110 chr6 143764131 143764521 -5752516 + MTE2b LTR MaLR 1 379 0 3 1681 531 0 0 0 chr6 143764701 143764760 -5752277 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1681 473 182 0 0 chr6 143764799 143764876 -5752161 - B3A SINE B2 -121 77 1 3 1681 303 242 101 0 chr6 143766369 143766468 -5750569 + L1M5 LINE L1 5647 5755 -369 3 1681 476 312 88 0 chr6 143766666 143766858 -5750179 + B3 SINE B2 2 210 -6 3 1681 858 141 0 0 chr6 143769015 143769157 -5747880 + (TAG)n Simple_repeat Simple_repeat 1 142 0 3 1681 234 264 45 22 chr6 143769676 143769765 -5747272 + MTEa LTR MaLR 283 373 -6 3 1681 541 354 25 29 chr6 143770270 143770549 -5746488 + RMER15 LTR ERVL 296 573 -2 3 1681 246 81 0 0 chr6 143771129 143771166 -5745871 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 3 1681 285 98 0 0 chr6 143771167 143771208 -5745829 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1681 271 290 136 82 chr6 143771222 143771406 -5745631 - B4A SINE B4 -17 275 82 3 1681 375 250 0 0 chr6 143771435 143771507 -5745530 - ID4_ SINE ID -9 74 3 3 1681 650 210 3 0 chr6 143773094 143773435 -5743602 + (CA)n Simple_repeat Simple_repeat 1 342 0 3 1681 21 36 0 0 chr6 143773467 143773495 -5743542 + AT_rich Low_complexity Low_complexity 1 28 0 3 1681 185 65 0 31 chr6 143777351 143777383 -5739654 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1681 240 35 0 0 chr6 143779472 143779501 -5737536 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 1681 198 0 0 0 chr6 143779560 143779582 -5737455 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1681 705 24 0 0 chr6 143779688 143779771 -5737266 + (TCC)n Simple_repeat Simple_repeat 2 84 0 3 1681 327 49 0 0 chr6 143780707 143780748 -5736289 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1681 191 36 36 0 chr6 143780868 143780896 -5736141 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1681 186 43 0 0 chr6 143781319 143781342 -5735695 + (CAGAA)n Simple_repeat Simple_repeat 4 26 0 4 1681 227 31 0 30 chr6 143781580 143781613 -5735424 + (TTTC)n Simple_repeat Simple_repeat 1 32 0 4 1681 414 0 0 0 chr6 143783628 143783674 -5733363 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1681 249 210 16 16 chr6 143784519 143784582 -5732455 + RSINE1 SINE B4 69 131 -34 4 1681 477 0 0 0 chr6 143785394 143785447 -5731590 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1681 1005 95 0 0 chr6 143785447 143785690 -5731347 + (GA)n Simple_repeat Simple_repeat 1 243 0 4 1682 739 139 374 0 chr6 143786205 143786368 -5730669 + URR1B DNA MER1_type 2 225 0 4 1682 337 259 61 27 chr6 143786236 143786383 -5730654 - CYRA11_Mm Unknown Y-chromosome -313 304 153 4 1682 307 287 104 21 chr6 143786678 143786774 -5730263 - PB1D10 SINE Alu 0 117 14 4 1682 474 284 68 6 chr6 143787979 143788156 -5728881 - B3A SINE B2 0 198 11 4 1682 653 164 26 8 chr6 143788327 143788444 -5728593 + B1_Mur2 SINE Alu 29 147 -2 4 1682 23 0 0 0 chr6 143793365 143793388 -5723649 + AT_rich Low_complexity Low_complexity 1 23 0 4 1682 505 111 0 53 chr6 143794712 143794799 -5722238 + polypyrimidine Low_complexity Low_complexity 29 111 0 4 1682 1246 78 0 11 chr6 143794799 143794981 -5722056 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1682 505 111 0 53 chr6 143794981 143795007 -5722030 + polypyrimidine Low_complexity Low_complexity 4 28 0 4 1682 1499 17 0 19 chr6 143795008 143795374 -5721663 + (TTTC)n Simple_repeat Simple_repeat 1 358 0 4 1682 1061 184 87 5 chr6 143796070 143796278 -5720759 + URR1B DNA MER1_type 1 225 0 4 1682 254 296 0 44 chr6 143796489 143796602 -5720435 + PB1D7 SINE Alu 1 108 -12 4 1682 223 336 134 0 chr6 143797291 143797410 -5719627 + B1_Mur1 SINE Alu 14 148 -1 4 1682 200 35 35 0 chr6 143798890 143798919 -5718118 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1682 243 0 0 0 chr6 143802201 143802228 -5714809 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1682 1087 50 43 7 chr6 143802228 143802360 -5714677 - B1_Mus2 SINE Alu -9 138 1 4 1682 215 56 56 0 chr6 143802996 143803032 -5714005 + (GGGAGA)n Simple_repeat Simple_repeat 5 42 0 4 1682 207 0 0 0 chr6 143803212 143803235 -5713802 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1682 239 0 0 31 chr6 143803778 143803810 -5713227 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1682 486 0 0 0 chr6 143803810 143803863 -5713174 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1682 424 251 76 23 chr6 143806482 143806657 -5710380 - B3A SINE B2 -9 207 32 4 1682 406 211 175 23 chr6 143807452 143807572 -5709465 + B3A SINE B2 6 149 -49 4 1682 994 97 17 11 chr6 143807572 143807749 -5709288 + (CA)n Simple_repeat Simple_repeat 1 178 0 4 1682 406 296 36 29 chr6 143807749 143807784 -5709253 + B3A SINE B2 150 182 -16 4 1682 203 61 30 0 chr6 143807785 143807818 -5709219 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1682 23 0 0 0 chr6 143807826 143807849 -5709188 + AT_rich Low_complexity Low_complexity 1 23 0 4 1682 270 0 0 0 chr6 143810197 143810227 -5706810 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 4 1682 207 219 0 0 chr6 143810352 143810393 -5706644 + (TATG)n Simple_repeat Simple_repeat 4 44 0 4 1682 856 232 28 0 chr6 143810394 143810571 -5706466 - B3A SINE B2 -16 182 1 4 1682 566 143 0 9 chr6 143812732 143812838 -5704199 + (TA)n Simple_repeat Simple_repeat 2 106 0 4 1682 228 289 0 38 chr6 143814013 143814092 -5702945 + ID4 SINE ID 8 83 0 4 1682 186 191 0 0 chr6 143814406 143814453 -5702584 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 4 1682 295 293 299 22 chr6 143814533 143814736 -5702301 - B4 SINE B4 -7 285 3 4 1682 297 0 0 0 chr6 143815929 143815962 -5701075 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1682 558 0 0 0 chr6 143815962 143816023 -5701014 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1682 290 68 0 0 chr6 143816047 143816091 -5700946 - B3A SINE B2 -153 45 2 4 1682 256 119 17 17 chr6 143816103 143816163 -5700874 + T-rich Low_complexity Low_complexity 1 60 0 4 1682 452 302 28 21 chr6 143816444 143816586 -5700451 - RSINE1 SINE B4 -22 143 1 4 1682 222 253 24 37 chr6 143816934 143817016 -5700021 + B1F SINE Alu 5 85 -64 4 1682 241 135 0 37 chr6 143817253 143817307 -5699730 + CT-rich Low_complexity Low_complexity 3 54 0 4 1682 728 97 8 0 chr6 143817317 143817441 -5699596 + (TC)n Simple_repeat Simple_repeat 2 126 0 4 1682 456 320 0 69 chr6 143817441 143817572 -5699465 - RSINE1 SINE B4 -29 136 15 4 1682 195 162 0 0 chr6 143818708 143818745 -5698292 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1682 560 129 10 0 chr6 143819313 143819414 -5697623 + (TCCA)n Simple_repeat Simple_repeat 1 102 0 4 1682 3041 78 0 8 chr6 143820818 143821217 -5695820 + MTA_Mm LTR MaLR 1 396 0 4 1682 404 0 43 43 chr6 143821748 143821817 -5695220 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 4 1682 1242 54 0 0 chr6 143821820 143821968 -5695069 - B1_Mus1 SINE Alu 0 148 1 4 1682 189 196 0 0 chr6 143823748 143823799 -5693238 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1682 231 88 0 0 chr6 143823923 143823957 -5693080 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 4 1682 316 253 0 12 chr6 143824563 143824643 -5692394 + MER5A DNA MER1_type 111 189 0 4 1682 21 0 0 0 chr6 143825051 143825072 -5691965 + AT_rich Low_complexity Low_complexity 1 21 0 4 1682 566 28 14 0 chr6 143825419 143825491 -5691546 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1682 2453 214 80 21 chr6 143825492 143826049 -5690988 - Lx5 LINE L1 -151 6899 6327 4 1682 891 268 216 64 chr6 143827745 143828167 -5688870 - Lx6 LINE L1 -9 7451 6966 4 1682 904 270 91 24 chr6 143828199 143828495 -5688542 + MTD LTR MaLR 84 399 -20 4 1682 1715 218 40 2 chr6 143828920 143829324 -5687713 - MTD LTR MaLR 0 419 1 4 1682 28 0 0 0 chr6 143829365 143829393 -5687644 + AT_rich Low_complexity Low_complexity 1 28 0 4 1682 653 314 17 0 chr6 143829816 143829991 -5687046 + B3 SINE B2 2 179 -37 4 1682 207 0 0 0 chr6 143830426 143830449 -5686588 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1682 504 0 0 0 chr6 143830712 143830768 -5686269 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1682 766 267 91 49 chr6 143830948 143831212 -5685825 + B4A SINE B4 1 275 -17 4 1682 558 108 0 0 chr6 143831216 143831299 -5685738 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 1682 2286 144 46 55 chr6 143831943 143832420 -5684617 + IAPLTR2_Mm LTR ERVK 1 473 -2 4 1682 4406 58 49 2 chr6 143832420 143833013 -5684024 + IAPEz-int LTR ERVK 3 662 -5819 4 1682 454 66 0 32 chr6 143833013 143833076 -5683961 + IAPEz-int LTR ERVK 1359 1419 -5062 4 1682 1838 119 4 4 chr6 143833065 143833327 -5683710 + IAPEz-int LTR ERVK 2236 2497 -5183 4 1682 938 88 24 0 chr6 143833322 143833447 -5683590 + IAPEz-int LTR ERVK 4783 4910 -2770 4 1682 5865 9 2 0 chr6 143833449 143834087 -5682950 + IAPEz-int LTR ERVK 4123 4761 -1720 4 1682 6880 29 4 0 chr6 143834086 143834867 -5682170 + IAPEz-int LTR ERVK 5698 6481 0 4 1682 2275 146 46 55 chr6 143834867 143835344 -5681693 + IAPLTR2_Mm LTR ERVK 1 473 -2 4 1682 255 162 25 12 chr6 143836603 143836684 -5680353 + GA-rich Low_complexity Low_complexity 1 82 0 4 1682 1231 112 6 22 chr6 143837510 143837692 -5679345 + B2_Mm1t SINE B2 1 179 -14 4 1682 189 0 0 0 chr6 143838764 143838785 -5678252 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1682 351 0 0 0 chr6 143839037 143839076 -5677961 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1682 423 331 83 0 chr6 143839078 143839223 -5677814 - B3A SINE B2 -37 161 5 4 1682 833 145 0 27 chr6 143839256 143839346 -5677691 + polypurine Low_complexity Low_complexity 2 89 0 4 1682 957 145 0 0 chr6 143839346 143839525 -5677512 + (GGA)n Simple_repeat Simple_repeat 2 180 0 4 1682 833 145 0 27 chr6 143839525 143839618 -5677419 + polypurine Low_complexity Low_complexity 90 180 0 4 1682 486 0 0 0 chr6 143840364 143840418 -5676619 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1682 297 312 10 10 chr6 143840451 143840548 -5676489 - B4A SINE B4 -18 274 178 4 1682 622 280 18 12 chr6 143841359 143841529 -5675508 - ID_B1 SINE B4 -19 205 35 4 1682 27 0 0 0 chr6 143843256 143843283 -5673754 + AT_rich Low_complexity Low_complexity 1 27 0 4 1682 737 198 90 15 chr6 143843283 143843483 -5673554 - B3 SINE B2 0 216 2 4 1682 498 239 60 0 chr6 143844844 143844978 -5672059 + B1F2 SINE Alu 8 149 0 4 1682 319 101 97 42 chr6 143845285 143845357 -5671680 - B3 SINE B2 0 216 141 4 1682 235 295 0 0 chr6 143845912 143845973 -5671064 - B3 SINE B2 -154 62 2 4 1682 234 261 28 28 chr6 143846095 143846166 -5670871 - ID_B1 SINE B4 -48 176 106 4 1682 723 297 89 40 chr6 143846800 143847187 -5669850 + Lx9 LINE L1 6914 7470 -174 4 1682 303 71 0 0 chr6 143847187 143847229 -5669808 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1682 723 312 90 44 chr6 143847229 143847368 -5669669 + Lx9 LINE L1 7471 7622 -22 4 1682 232 254 14 29 chr6 143847977 143848046 -5668991 + MLT1K LTR MaLR 509 576 -19 4 1682 22 56 0 0 chr6 143850361 143850397 -5666640 + AT_rich Low_complexity Low_complexity 1 36 0 4 1682 442 260 0 30 chr6 143850413 143850544 -5666493 + ID_B1 SINE B4 98 224 0 4 1682 477 0 0 0 chr6 143852214 143852267 -5664770 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1682 22 0 0 0 chr6 143852494 143852516 -5664521 + AT_rich Low_complexity Low_complexity 1 22 0 4 1682 261 0 0 0 chr6 143853196 143853225 -5663812 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1682 360 0 0 0 chr6 143853225 143853264 -5663773 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1682 255 125 0 0 chr6 143854979 143855019 -5662018 + (TAA)n Simple_repeat Simple_repeat 3 42 0 4 1682 294 73 0 0 chr6 143856484 143856525 -5660512 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 4 1682 351 65 0 0 chr6 143856570 143856616 -5660421 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 4 1682 785 134 10 12 chr6 143856976 143857388 -5659649 + (TG)n Simple_repeat Simple_repeat 1 410 0 5 1682 462 188 12 6 chr6 143857430 143857596 -5659441 + (TG)n Simple_repeat Simple_repeat 2 168 0 5 1682 204 40 0 0 chr6 143858636 143858661 -5658376 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 5 1682 378 0 0 0 chr6 143860122 143860164 -5656873 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1682 346 270 18 18 chr6 143860260 143860373 -5656664 + CT-rich Low_complexity Low_complexity 4 116 0 5 1682 307 284 0 0 chr6 143860377 143860451 -5656586 - ID4_ SINE ID -9 74 1 5 1682 393 285 18 117 chr6 143861716 143861887 -5655150 - B3A SINE B2 0 198 45 5 1682 326 70 35 0 chr6 143862297 143862354 -5654683 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 5 1682 244 340 9 9 chr6 143862364 143862471 -5654566 + (CATATA)n Simple_repeat Simple_repeat 1 107 0 5 1682 560 243 86 0 chr6 143863148 143863288 -5653749 + B3A SINE B2 2 153 -45 5 1682 468 0 0 0 chr6 143863306 143863358 -5653679 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1682 226 284 102 31 chr6 143863751 143863947 -5653090 + L1MB3 LINE L1 5842 6051 -132 5 1682 725 239 77 64 chr6 143864937 143865250 -5651787 - L1M5 LINE L1 -393 5786 5470 5 1682 648 267 47 0 chr6 143865287 143865459 -5651578 - B3 SINE B2 -36 180 1 5 1682 1243 20 0 20 chr6 143865740 143865889 -5651148 + B1_Mus2 SINE Alu 2 147 0 5 1682 1620 46 0 0 chr6 143865897 143866093 -5650944 + L1Md_T LINE L1 6385 6580 -2 5 1682 728 181 6 0 chr6 143867602 143867768 -5649269 + GA-rich Low_complexity Low_complexity 4 170 0 5 1682 582 260 34 14 chr6 143868467 143868615 -5648422 - B3A SINE B2 -46 152 2 5 1682 26 64 0 0 chr6 143869200 143869247 -5647790 + AT_rich Low_complexity Low_complexity 1 47 0 5 1682 204 343 0 0 chr6 143870815 143870885 -5646152 - L2b LINE L2 -12 3363 3294 5 1682 278 192 27 71 chr6 143871180 143871292 -5645745 + L1MB4 LINE L1 5831 5937 -243 5 1682 589 123 19 0 chr6 143871347 143871453 -5645584 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 5 1682 303 335 69 56 chr6 143873560 143873811 -5643226 + L1MB4 LINE L1 5721 5971 -209 5 1682 305 19 0 69 chr6 143874219 143874277 -5642760 + (TTA)n Simple_repeat Simple_repeat 1 54 0 5 1682 346 294 10 0 chr6 143874617 143874719 -5642318 + B3A SINE B2 1 103 -95 5 1682 254 265 35 24 chr6 143874764 143874849 -5642188 + B3A SINE B2 108 193 -5 5 1682 1338 73 0 0 chr6 143874858 143875037 -5642000 + (CCAA)n Simple_repeat Simple_repeat 1 179 0 5 1682 1095 171 356 4 chr6 143875454 143875729 -5641308 + ORR1D1 LTR MaLR 3 374 0 5 1682 438 114 0 0 chr6 143875815 143875885 -5641152 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1682 275 301 72 44 chr6 143875890 143876071 -5640966 - B4A SINE B4 -18 274 89 5 1682 522 70 0 0 chr6 143877187 143877258 -5639779 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1682 198 191 0 0 chr6 143877663 143877705 -5639332 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 5 1682 988 167 8 0 chr6 143877741 143877982 -5639055 + (TCCA)n Simple_repeat Simple_repeat 1 243 0 5 1682 221 229 30 0 chr6 143877982 143878113 -5638924 + (TCTA)n Simple_repeat Simple_repeat 3 137 0 5 1682 21 57 0 0 chr6 143878552 143878587 -5638450 + AT_rich Low_complexity Low_complexity 1 35 0 5 1682 21 57 0 0 chr6 143878604 143878639 -5638398 + AT_rich Low_complexity Low_complexity 1 35 0 5 1682 602 287 40 0 chr6 143878865 143879039 -5637998 - B3A SINE B2 -16 182 2 5 1682 22 35 0 0 chr6 143879113 143879142 -5637895 + AT_rich Low_complexity Low_complexity 1 29 0 5 1682 269 313 113 0 chr6 143879284 143879404 -5637633 - MIR SINE MIR -42 220 96 5 1682 1655 173 140 8 chr6 143883389 143883761 -5633276 + MTC LTR MaLR 1 421 0 5 1682 577 307 73 48 chr6 143883886 143884242 -5632795 + MTEa LTR MaLR 1 365 -14 5 1682 908 173 6 0 chr6 143884803 143884982 -5632055 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1682 247 173 75 62 chr6 143886389 143886549 -5630488 + GA-rich Low_complexity Low_complexity 4 165 0 5 1682 245 181 134 0 chr6 143886680 143886829 -5630208 + GA-rich Low_complexity Low_complexity 1 169 0 5 1682 206 323 68 0 chr6 143886791 143886952 -5630085 + (CAGGG)n Simple_repeat Simple_repeat 3 174 0 5 1682 222 136 0 0 chr6 143889531 143889575 -5627462 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 1682 435 19 0 0 chr6 143890240 143890292 -5626745 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1682 324 306 9 9 chr6 143890896 143891005 -5626032 + PB1D10 SINE Alu 9 117 0 5 1682 423 56 0 0 chr6 143891329 143891383 -5625654 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1682 798 310 48 28 chr6 143891425 143891823 -5625214 - MTD LTR MaLR -13 406 1 5 1682 412 319 44 85 chr6 143892530 143892801 -5624236 + MTE2a LTR MaLR 77 336 -43 5 1682 276 179 0 0 chr6 143893199 143893277 -5623760 + C-rich Low_complexity Low_complexity 1 78 0 5 1682 253 250 0 0 chr6 143893519 143893575 -5623462 + MER5A1 DNA MER1_type 93 148 -18 5 1682 371 238 58 19 chr6 143894523 143894626 -5622411 + B1F SINE Alu 42 148 -1 5 1682 270 378 52 58 chr6 143895318 143895492 -5621545 - B4A SINE B4 -118 174 2 5 1682 257 299 46 0 chr6 143895604 143895691 -5621346 + MLT1A LTR MaLR 282 372 -2 5 1682 230 276 69 39 chr6 143896507 143896609 -5620428 + RCHARR1 DNA MER1_type 5 109 -865 5 1682 242 214 0 35 chr6 143897043 143897101 -5619936 + (CATA)n Simple_repeat Simple_repeat 4 59 0 5 1682 369 43 0 0 chr6 143897116 143897163 -5619874 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1682 357 324 91 29 chr6 143897645 143897855 -5619182 - L2 LINE L2 -529 2890 2668 5 1682 279 0 0 0 chr6 143898302 143898333 -5618704 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 1682 229 307 33 43 chr6 143898641 143898733 -5618304 + L2c LINE L2 3282 3372 -15 5 1682 302 281 35 21 chr6 143898827 143898969 -5618068 + (TGGA)n Simple_repeat Simple_repeat 3 146 0 5 1682 838 96 15 0 chr6 143899407 143899542 -5617495 + (TCCC)n Simple_repeat Simple_repeat 1 137 0 5 1682 265 277 12 12 chr6 143899544 143899628 -5617409 - B1F SINE Alu -52 97 14 5 1682 425 320 175 8 chr6 143899652 143899898 -5617139 - MLT1A0 LTR MaLR -73 292 6 5 1682 182 354 12 12 chr6 143899910 143899990 -5617047 + L2c LINE L2 3272 3351 -36 5 1682 405 0 0 0 chr6 143900013 143900058 -5616979 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 5 1682 25 31 0 0 chr6 143900200 143900232 -5616805 + AT_rich Low_complexity Low_complexity 1 32 0 5 1682 456 354 6 47 chr6 143900539 143900708 -5616329 + RSINE1 SINE B4 4 165 0 5 1682 208 225 0 0 chr6 143900708 143900748 -5616289 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1682 633 237 16 0 chr6 143901010 143901184 -5615853 - B3 SINE B2 -7 191 13 5 1682 250 271 234 0 chr6 143902214 143902321 -5614716 + ORR1E LTR MaLR 1 132 -227 5 1682 616 268 23 17 chr6 143903031 143903206 -5613831 - B3A SINE B2 0 198 23 5 1682 626 314 6 50 chr6 143904244 143904515 -5612522 - ORR1E LTR MaLR -123 251 3 5 1682 183 156 0 0 chr6 143904792 143904824 -5612213 + GA-rich Low_complexity Low_complexity 2 33 0 5 1682 1239 96 0 0 chr6 143904832 143905121 -5611916 + (CCA)n Simple_repeat Simple_repeat 1 289 0 5 1682 526 298 48 48 chr6 143908709 143908938 -5608099 - ORR1E LTR MaLR -128 231 3 5 1682 386 342 53 56 chr6 143909639 143909995 -5607042 + L1MA8 LINE L1 5576 5930 -361 5 1682 314 45 0 22 chr6 143910512 143910557 -5606480 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1682 572 255 138 40 chr6 143910612 143910865 -5606172 - B4A SINE B4 -14 278 1 5 1682 294 286 61 38 chr6 143911246 143911377 -5605660 + B4 SINE B4 12 145 -147 5 1682 267 31 0 0 chr6 143911920 143911952 -5605085 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 5 1682 363 229 23 11 chr6 143911997 143912174 -5604863 + GA-rich Low_complexity Low_complexity 1 179 0 5 1683 195 69 0 0 chr6 143917225 143917254 -5599783 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1683 356 375 31 5 chr6 143917479 143917672 -5599365 - AmnSINE1 SINE SINE -74 501 304 5 1683 258 143 0 0 chr6 143918172 143918221 -5598816 + (A)n Simple_repeat Simple_repeat 1 49 0 5 1683 438 231 66 22 chr6 143919187 143919324 -5597713 - B1F SINE Alu -2 147 5 5 1683 225 0 0 0 chr6 143919628 143919653 -5597384 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 5 1683 394 180 239 21 chr6 143919653 143919795 -5597242 - Lx5 LINE L1 -16 7034 6862 5 1683 208 292 113 10 chr6 143920196 143920293 -5596744 - MIRc SINE MIR -81 187 81 5 1683 282 327 9 0 chr6 143921081 143921194 -5595843 + L1M3 LINE L1 4832 4945 -1195 5 1683 393 75 0 0 chr6 143921201 143921254 -5595783 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 5 1683 289 264 11 0 chr6 143921254 143921341 -5595696 + L1M3 LINE L1 4939 5026 -1114 5 1683 234 239 0 0 chr6 143921603 143921674 -5595363 + (CAA)n Simple_repeat Simple_repeat 2 72 0 5 1683 227 130 91 18 chr6 143921713 143921768 -5595269 + L1M3 LINE L1 5386 5444 -853 5 1683 267 107 12 62 chr6 143925448 143925528 -5591509 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1683 30 0 0 0 chr6 143930096 143930126 -5586911 + AT_rich Low_complexity Low_complexity 1 30 0 5 1683 180 231 0 0 chr6 143930130 143930182 -5586855 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1683 604 269 33 28 chr6 143930182 143930362 -5586675 - B3A SINE B2 -16 182 2 5 1683 180 0 0 0 chr6 143930892 143930912 -5586125 + (TCTCCC)n Simple_repeat Simple_repeat 6 25 0 5 1683 218 29 59 0 chr6 143931367 143931401 -5585636 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1683 1189 62 0 0 chr6 143931401 143931546 -5585491 - B1_Mm SINE Alu -1 146 2 5 1683 369 253 106 103 chr6 143931579 143931927 -5585110 - ORR1E LTR MaLR -5 354 6 5 1683 876 84 0 8 chr6 143932122 143932242 -5584795 - Lx2B LINE L1 -510 6490 6372 5 1683 1709 88 12 28 chr6 143932237 143932484 -5584553 - Lx2B LINE L1 -1148 5852 5610 5 1683 2725 157 27 12 chr6 143932485 143932974 -5584063 + Lx2B LINE L1 6495 6990 -10 6 1683 186 133 0 0 chr6 143932974 143933004 -5584033 + (TAA)n Simple_repeat Simple_repeat 1 30 0 6 1683 521 131 0 9 chr6 143933811 143933919 -5583118 + (GA)n Simple_repeat Simple_repeat 2 108 0 6 1683 638 113 0 9 chr6 143934643 143934750 -5582287 + (TCCC)n Simple_repeat Simple_repeat 1 106 0 6 1683 21 36 0 0 chr6 143936046 143936074 -5580963 + AT_rich Low_complexity Low_complexity 1 28 0 6 1683 448 312 79 46 chr6 143936503 143937442 -5579595 - L1ME1 LINE L1 -184 5995 5024 6 1683 669 93 0 0 chr6 143937459 143937566 -5579471 + (TG)n Simple_repeat Simple_repeat 2 108 0 6 1683 3053 61 8 12 chr6 143937943 143938343 -5578694 + L1_Mus1 LINE L1 6170 6567 0 6 1683 403 300 186 27 chr6 143938879 143939469 -5577568 - L1ME1 LINE L1 -3194 2952 2269 6 1683 222 62 0 0 chr6 143939539 143939571 -5577466 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 6 1683 225 288 210 48 chr6 143939780 143939904 -5577133 + B1F SINE Alu 2 145 -4 6 1683 202 359 0 0 chr6 143939905 143939925 -5577112 + polypurine Low_complexity Low_complexity 3 22 0 6 1683 186 43 0 0 chr6 143939925 143939948 -5577089 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 6 1683 526 222 19 14 chr6 143939948 143940225 -5576812 + GA-rich Low_complexity Low_complexity 1 278 0 6 1683 446 0 19 0 chr6 143940539 143940593 -5576444 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1683 522 0 0 0 chr6 143940593 143940650 -5576387 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1683 226 264 0 0 chr6 143941726 143941779 -5575258 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 6 1683 348 271 179 60 chr6 143941810 143942045 -5574992 - B4A SINE B4 -22 270 8 6 1683 23 33 0 0 chr6 143942756 143942786 -5574251 + AT_rich Low_complexity Low_complexity 1 30 0 6 1683 351 65 0 0 chr6 143943275 143943321 -5573716 + (CGTG)n Simple_repeat Simple_repeat 2 47 0 6 1683 365 128 12 0 chr6 143944253 143944311 -5572726 + (TCTCTG)n Simple_repeat Simple_repeat 5 62 0 6 1683 938 106 0 11 chr6 143944311 143944493 -5572544 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1683 365 128 12 0 chr6 143944493 143944520 -5572517 + (TCTCTG)n Simple_repeat Simple_repeat 1 28 0 6 1683 227 203 0 15 chr6 143944541 143944606 -5572431 + CT-rich Low_complexity Low_complexity 2 65 0 6 1683 333 100 0 0 chr6 143944775 143944825 -5572212 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 6 1683 612 140 0 0 chr6 143945570 143945677 -5571360 + (CA)n Simple_repeat Simple_repeat 2 108 0 6 1683 381 149 0 0 chr6 143946361 143946428 -5570609 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1683 336 324 49 21 chr6 143947318 143947460 -5569577 + B1F2 SINE Alu 1 146 -3 6 1683 690 272 8 16 chr6 143947816 143948004 -5569033 - B3A SINE B2 -10 185 2 6 1683 201 200 44 0 chr6 143948456 143948501 -5568536 + GA-rich Low_complexity Low_complexity 4 50 0 6 1683 241 276 70 38 chr6 143948600 143948758 -5568279 + RSINE1 SINE B4 3 165 0 6 1683 312 133 0 0 chr6 143949564 143949624 -5567413 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1683 368 82 16 0 chr6 143949626 143949687 -5567350 + (CAGAGA)n Simple_repeat Simple_repeat 2 63 0 6 1683 261 264 79 22 chr6 143949687 143949776 -5567261 - B2_Mm2 SINE B2 -100 95 2 6 1683 602 245 7 0 chr6 143949792 143949935 -5567102 - B1_Mur1 SINE Alu 0 149 6 6 1683 274 238 0 106 chr6 143949858 143949952 -5567085 - MT2B LTR ERVL -363 238 155 6 1683 297 179 22 67 chr6 143950754 143950765 -5566272 + MT2B2 LTR ERVL 155 161 -423 6 1683 348 186 80 23 chr6 143950765 143950853 -5566184 + B1_Mur2 SINE Alu 2 94 -55 6 1683 283 289 13 0 chr6 143951173 143951249 -5565788 - ID_B1 SINE B4 -12 212 136 6 1683 234 302 208 0 chr6 143951249 143951269 -5565768 - B1F SINE Alu -12 137 22 6 1683 468 0 0 0 chr6 143952201 143952253 -5564784 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 1683 189 171 0 0 chr6 143952798 143952833 -5564204 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1683 226 333 25 66 chr6 143953396 143953442 -5563595 + PB1D9 SINE Alu 1 114 -3 6 1683 367 219 0 0 chr6 143953442 143953515 -5563522 + ID_B1 SINE B4 146 218 -6 6 1683 261 0 0 0 chr6 143953716 143953745 -5563292 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1683 913 251 14 0 chr6 143953764 143953971 -5563066 - B3 SINE B2 -6 210 1 6 1683 426 270 28 55 chr6 143954012 143954157 -5562880 - B1F SINE Alu -4 145 5 6 1683 288 0 0 0 chr6 143954160 143954192 -5562845 + (TTA)n Simple_repeat Simple_repeat 1 32 0 6 1683 367 341 22 0 chr6 143955798 143955933 -5561104 + RSINE1 SINE B4 13 150 -15 6 1683 2972 197 55 8 chr6 143957330 143957954 -5559083 + L1_Mur3 LINE L1 5148 5800 -80 6 1683 602 148 0 9 chr6 143957963 143958017 -5559020 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1683 1057 117 0 22 chr6 143958017 143958201 -5558836 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 1683 602 148 0 9 chr6 143958201 143958262 -5558775 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1683 727 256 25 25 chr6 143958289 143958493 -5558544 + Lx7 LINE L1 7493 7696 0 6 1683 485 174 10 0 chr6 143959078 143959176 -5557861 + B1_Mus2 SINE Alu 49 147 0 6 1683 249 243 0 0 chr6 143959176 143959246 -5557791 + GA-rich Low_complexity Low_complexity 4 73 0 6 1683 1161 67 6 22 chr6 143959262 143959445 -5557592 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1683 843 166 0 0 chr6 143959445 143959602 -5557435 + GA-rich Low_complexity Low_complexity 1 157 0 6 1683 567 29 0 0 chr6 143961198 143961267 -5555770 + (TC)n Simple_repeat Simple_repeat 1 69 0 6 1683 498 61 0 0 chr6 143961579 143961645 -5555392 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1683 22 0 0 0 chr6 143962209 143962231 -5554806 + AT_rich Low_complexity Low_complexity 1 22 0 6 1683 1691 181 103 42 chr6 143962846 143963261 -5553776 + RLTR20B3 LTR ERVK 1 471 -106 6 1683 459 0 0 0 chr6 143963261 143963312 -5553725 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1683 1691 169 91 37 chr6 143963312 143963414 -5553623 + RLTR20B3 LTR ERVK 472 574 -3 6 1683 815 208 6 0 chr6 143964417 143964735 -5552302 + (TG)n Simple_repeat Simple_repeat 1 320 0 6 1683 542 217 11 0 chr6 143964761 143964936 -5552101 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 6 1683 689 132 0 8 chr6 143966040 143966162 -5550875 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 6 1683 267 324 0 0 chr6 143966863 143966937 -5550100 - PB1D7 SINE Alu -37 83 10 6 1683 239 328 15 22 chr6 143968183 143968270 -5548767 + (TATATG)n Simple_repeat Simple_repeat 1 88 0 6 1683 1378 52 7 16 chr6 143968270 143968578 -5548459 + (TG)n Simple_repeat Simple_repeat 1 305 0 6 1683 239 328 15 22 chr6 143968578 143968623 -5548414 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 6 1683 189 0 0 0 chr6 143969245 143969266 -5547771 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 1683 227 250 0 0 chr6 143970934 143970986 -5546051 - ID_B1 SINE B4 0 224 173 6 1683 334 346 84 17 chr6 143973288 143973585 -5543452 + L2 LINE L2 2636 2952 -467 6 1683 289 68 0 63 chr6 143973987 143974050 -5542987 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 6 1683 344 152 15 0 chr6 143974050 143974116 -5542921 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 1683 513 0 0 0 chr6 143974151 143974208 -5542829 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 6 1683 754 285 98 8 chr6 143974217 143974472 -5542565 - B4 SINE B4 -14 278 1 6 1683 227 305 49 0 chr6 143975063 143975145 -5541892 + PB1D10 SINE Alu 30 115 -2 6 1683 200 257 29 0 chr6 143975154 143975224 -5541813 + A-rich Low_complexity Low_complexity 3 74 0 6 1683 343 345 84 16 chr6 143975923 143976173 -5540864 - Lx8 LINE L1 -170 7303 7037 6 1683 323 364 76 40 chr6 143977173 143977448 -5539589 + B4 SINE B4 3 287 -5 6 1683 223 250 0 0 chr6 143977479 143977527 -5539510 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1683 312 202 28 79 chr6 143977798 143977975 -5539062 + RMER17C LTR ERVK 108 275 -135 6 1683 417 270 172 11 chr6 143978010 143978190 -5538847 - B3 SINE B2 -6 210 2 6 1683 547 281 115 22 chr6 143979167 143979349 -5537688 - B4A SINE B4 -92 200 2 6 1683 580 261 119 10 chr6 143979437 143979638 -5537399 + RLTR12B LTR ERVK 1 223 -305 6 1683 236 203 186 0 chr6 143979635 143979694 -5537343 - B4 SINE B4 -221 71 2 6 1683 1320 191 18 11 chr6 143979808 143980089 -5536948 + RLTR12B LTR ERVK 227 509 -19 6 1683 362 265 0 0 chr6 143983419 143983517 -5533520 + B3A SINE B2 1 98 -100 6 1683 24 0 0 0 chr6 143983740 143983764 -5533273 + AT_rich Low_complexity Low_complexity 1 24 0 6 1683 771 261 10 19 chr6 143983767 143983974 -5533063 - B3 SINE B2 -4 212 8 6 1683 554 301 66 37 chr6 143985406 143985648 -5531389 - B4 SINE B4 -39 253 5 6 1683 21 0 0 0 chr6 143985685 143985706 -5531331 + AT_rich Low_complexity Low_complexity 1 21 0 6 1683 345 288 14 83 chr6 143986842 143986986 -5530051 + RSINE1 SINE B4 3 136 -29 6 1683 606 109 0 0 chr6 143986986 143987078 -5529959 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 1683 394 82 71 10 chr6 143987434 143987533 -5529504 + CT-rich Low_complexity Low_complexity 2 106 0 6 1683 180 0 0 0 chr6 143989576 143989596 -5527441 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1683 210 150 0 0 chr6 143990380 143990420 -5526617 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1683 223 156 67 0 chr6 143991949 143991994 -5525043 + GA-rich Low_complexity Low_complexity 2 49 0 6 1683 297 0 0 0 chr6 143992232 143992265 -5524772 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1683 36 0 0 0 chr6 143992728 143992764 -5524273 + AT_rich Low_complexity Low_complexity 1 36 0 6 1683 316 216 14 0 chr6 143993440 143993514 -5523523 - PB1D9 SINE Alu 0 120 46 6 1683 315 0 0 0 chr6 143993833 143993868 -5523169 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1683 500 304 15 55 chr6 143996258 143996460 -5520577 - B3A SINE B2 -3 195 2 7 1683 752 174 178 5 chr6 143996460 143996651 -5520386 + URR1B DNA MER1_type 2 225 0 7 1683 523 89 33 0 chr6 143996651 143996741 -5520296 + (TCTCCC)n Simple_repeat Simple_repeat 3 95 0 7 1683 405 0 0 0 chr6 143996743 143996788 -5520249 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1683 254 175 48 0 chr6 143996807 143996870 -5520167 - ID_B1 SINE B4 -67 157 92 7 1683 379 311 89 0 chr6 143997147 143997327 -5519710 + MIR SINE MIR 57 252 -10 7 1683 441 248 0 0 chr6 143997402 143997547 -5519490 + (TA)n Simple_repeat Simple_repeat 1 145 0 7 1683 250 261 15 0 chr6 143997557 143997622 -5519415 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 7 1683 266 206 0 14 chr6 143997633 143997707 -5519330 + (CATA)n Simple_repeat Simple_repeat 3 75 0 7 1683 318 194 0 0 chr6 143999912 143999979 -5517058 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 1683 364 326 0 0 chr6 144000000 144000095 -5516942 + (CA)n Simple_repeat Simple_repeat 2 96 0 1 1683 180 0 0 0 chr6 144000589 144000609 -5516428 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1683 262 167 71 12 chr6 144000609 144000694 -5516343 + Lx9 LINE L1 7458 7547 -97 3 1683 225 316 121 17 chr6 144002747 144002863 -5514174 + B1F2 SINE Alu 21 148 -1 4 1683 182 222 89 0 chr6 144004443 144004488 -5512549 - L2c LINE L2 -178 3209 3161 5 1683 351 0 0 0 chr6 144004513 144004552 -5512485 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1683 641 301 146 55 chr6 144006397 144007181 -5509856 + L1M3 LINE L1 4472 5326 -814 7 1683 528 202 190 87 chr6 144007184 144007379 -5509658 + B3 SINE B2 2 216 0 8 1683 689 302 67 23 chr6 144007394 144007781 -5509256 + L1M3 LINE L1 5319 5722 -590 7 1683 806 132 0 7 chr6 144007781 144007918 -5509119 + (GAAA)n Simple_repeat Simple_repeat 4 139 0 9 1683 616 284 63 40 chr6 144008007 144008302 -5508735 - ORR1D2 LTR MaLR -5 374 44 1 1683 725 267 11 32 chr6 144009330 144009516 -5507521 - B3A SINE B2 -15 183 2 1 1683 248 247 65 86 chr6 144010345 144010438 -5506599 - MIRb SINE MIR -62 206 116 1 1683 241 335 96 26 chr6 144010972 144011128 -5505909 + L2a LINE L2 3260 3426 0 1 1683 321 26 0 0 chr6 144012428 144012466 -5504571 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1683 826 239 53 0 chr6 144013115 144013324 -5503713 - MTD LTR MaLR 0 419 200 1 1683 24 53 0 0 chr6 144013500 144013538 -5503499 + AT_rich Low_complexity Low_complexity 1 38 0 1 1683 378 0 0 0 chr6 144014145 144014187 -5502850 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1683 262 294 15 0 chr6 144014905 144014973 -5502064 + CT-rich Low_complexity Low_complexity 2 70 0 1 1683 252 0 0 0 chr6 144016834 144016862 -5500175 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1683 559 190 0 22 chr6 144017019 144017202 -5499835 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1683 240 86 0 0 chr6 144017241 144017276 -5499761 + (CAGAGA)n Simple_repeat Simple_repeat 6 40 0 2 1683 349 321 136 68 chr6 144017511 144017658 -5499379 - B3A SINE B2 -15 183 27 2 1683 432 185 25 0 chr6 144017682 144017763 -5499274 - B1_Mus2 SINE Alu 0 147 65 2 1683 620 174 23 103 chr6 144017731 144017905 -5499132 - B1_Mur1 SINE Alu -22 127 2 2 1683 805 214 11 17 chr6 144018154 144018330 -5498707 + B3 SINE B2 1 175 -41 2 1683 363 78 0 0 chr6 144018340 144018391 -5498646 + (CAGT)n Simple_repeat Simple_repeat 4 54 0 2 1683 310 351 27 7 chr6 144019294 144019443 -5497594 + RSINE1 SINE B4 5 156 -9 2 1683 815 192 6 0 chr6 144020437 144020614 -5496423 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1683 1772 159 44 68 chr6 144020614 144020999 -5496038 + ORR1C2 LTR MaLR 1 376 -8 2 1683 220 261 0 0 chr6 144021024 144021070 -5495967 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1683 380 273 0 7 chr6 144021081 144021236 -5495801 + (TG)n Simple_repeat Simple_repeat 1 154 0 3 1683 246 177 137 59 chr6 144022692 144022794 -5494243 - L4 LINE RTE -635 1394 1285 3 1683 245 155 0 17 chr6 144022981 144023040 -5493997 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1683 566 272 45 35 chr6 144023887 144024089 -5492948 + Tigger7 DNA MER2_type 2280 2483 -8 3 1683 227 246 15 0 chr6 144026865 144026930 -5490107 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1683 596 322 39 0 chr6 144026930 144027138 -5489899 - ID_B1 SINE B4 -7 217 2 3 1683 1651 224 68 19 chr6 144027790 144028258 -5488779 + L1_Mur3 LINE L1 3677 4167 -1713 3 1683 312 27 0 0 chr6 144028262 144028299 -5488738 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1683 241 325 16 70 chr6 144029326 144029397 -5487640 - Tigger5 DNA MER2_type -13 2393 2326 3 1683 379 272 224 16 chr6 144029397 144029580 -5487457 + ID_B1 SINE B4 2 222 -2 3 1683 241 325 16 70 chr6 144029580 144029637 -5487400 - Tigger5 DNA MER2_type -81 2325 2272 3 1683 331 322 95 63 chr6 144029623 144029812 -5487225 - Tigger5 DNA MER2_type -2175 231 37 3 1683 27 92 0 0 chr6 144030263 144030339 -5486698 + AT_rich Low_complexity Low_complexity 1 76 0 4 1683 434 158 46 46 chr6 144030339 144030577 -5486460 + (TCTA)n Simple_repeat Simple_repeat 1 238 0 4 1683 23 0 0 0 chr6 144032182 144032205 -5484832 + AT_rich Low_complexity Low_complexity 1 23 0 4 1683 237 33 0 0 chr6 144032872 144032902 -5484135 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1683 579 285 12 0 chr6 144033605 144033770 -5483267 + L1MA4 LINE L1 5682 5848 -452 4 1683 672 334 77 11 chr6 144034131 144034497 -5482540 + Lx8 LINE L1 6856 7245 -228 4 1683 258 304 100 73 chr6 144034706 144034816 -5482221 - PB1D7 SINE Alu -5 115 3 4 1683 214 186 62 92 chr6 144034769 144034834 -5482203 - ID_B1 SINE B4 -96 128 66 4 1683 214 171 0 0 chr6 144034915 144034950 -5482087 - B1F2 SINE Alu -114 35 1 4 1683 774 148 0 0 chr6 144035720 144035882 -5481155 + (CA)n Simple_repeat Simple_repeat 1 162 0 4 1683 462 311 0 43 chr6 144036815 144036956 -5480081 - ID_B1 SINE B4 -6 218 84 5 1683 21 0 0 0 chr6 144037543 144037564 -5479473 + AT_rich Low_complexity Low_complexity 1 21 0 5 1683 351 264 45 42 chr6 144037879 144038051 -5478986 - MTEb LTR MaLR -6 373 200 5 1683 567 307 117 15 chr6 144038885 144039090 -5477947 + B4 SINE B4 4 229 -63 5 1683 1401 204 152 7 chr6 144039090 144039421 -5477616 + Lx2A1 LINE L1 6640 7002 -6 5 1683 22 0 0 0 chr6 144039421 144039443 -5477594 + AT_rich Low_complexity Low_complexity 1 22 0 5 1683 288 175 0 0 chr6 144039517 144039580 -5477457 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1683 678 151 0 0 chr6 144040627 144040766 -5476271 + CT-rich Low_complexity Low_complexity 1 139 0 5 1683 423 0 0 0 chr6 144040767 144040814 -5476223 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1683 450 331 27 34 chr6 144040814 144040961 -5476076 - B3A SINE B2 -51 147 2 5 1683 261 139 0 0 chr6 144041108 144041151 -5475886 + U5 snRNA snRNA 16 58 -58 6 1683 192 167 95 0 chr6 144043936 144043978 -5473059 - L4 LINE RTE -1091 938 893 6 1683 227 184 0 0 chr6 144044021 144044059 -5472978 + T-rich Low_complexity Low_complexity 3 40 0 6 1683 180 0 0 0 chr6 144044878 144044898 -5472139 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 1683 283 310 83 77 chr6 144045032 144045200 -5471837 - Lx8 LINE L1 -1126 6347 6179 6 1683 234 0 0 0 chr6 144045955 144045981 -5471056 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1683 201 154 0 0 chr6 144046244 144046283 -5470754 + A-rich Low_complexity Low_complexity 1 39 0 6 1683 209 119 24 0 chr6 144047173 144047215 -5469822 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1683 264 261 72 0 chr6 144047828 144047897 -5469140 - B1F SINE Alu -69 80 7 6 1683 383 91 121 0 chr6 144047912 144047978 -5469059 - HAL1-3A_ME LINE L1 -809 2049 1976 6 210 377 110 44 38 chr6 144048003 144048163 -5468874 + (TG)n Simple_repeat Simple_repeat 2 162 0 7 1684 264 294 207 11 chr6 144048964 144049143 -5467894 - MER58B DNA MER1_type -23 318 105 7 1684 190 231 51 0 chr6 144050609 144050648 -5466389 + L2c LINE L2 3297 3337 -50 7 1684 242 295 16 0 chr6 144050913 144050974 -5466063 + RSINE1 SINE B4 4 65 -100 7 1684 514 318 16 0 chr6 144050971 144051100 -5465937 + RSINE1 SINE B4 10 140 -25 7 1684 24 32 0 0 chr6 144051186 144051217 -5465820 + AT_rich Low_complexity Low_complexity 1 31 0 7 1684 383 149 37 0 chr6 144051238 144051345 -5465692 + (TA)n Simple_repeat Simple_repeat 2 112 0 7 1684 183 42 0 0 chr6 144051341 144051365 -5465672 + (TAA)n Simple_repeat Simple_repeat 3 26 0 7 1684 288 0 0 0 chr6 144057770 144057802 -5459235 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1684 21 0 0 0 chr6 144057902 144057923 -5459114 + AT_rich Low_complexity Low_complexity 1 21 0 7 1684 439 309 39 26 chr6 144058586 144058742 -5458295 - RSINE1 SINE B4 -5 160 3 8 1684 402 21 0 0 chr6 144059159 144059206 -5457831 + (TCC)n Simple_repeat Simple_repeat 3 49 0 8 1684 470 298 23 81 chr6 144059711 144059883 -5457154 + RSINE1 SINE B4 4 165 0 8 1684 225 0 0 0 chr6 144059884 144059909 -5457128 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 8 1684 567 269 0 0 chr6 144060891 144061032 -5456005 + B1F SINE Alu 6 146 -3 8 1684 205 316 10 39 chr6 144061206 144061308 -5455729 + (TATG)n Simple_repeat Simple_repeat 3 101 0 8 1684 1045 307 135 37 chr6 144062140 144064010 -5453027 + L1MC LINE L1 3618 5670 -674 8 1684 261 0 0 0 chr6 144064260 144064289 -5452748 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1684 387 214 0 23 chr6 144064706 144064835 -5452202 + GA-rich Low_complexity Low_complexity 3 128 0 8 1684 180 77 0 0 chr6 144066526 144066552 -5450485 + (GGA)n Simple_repeat Simple_repeat 2 27 0 8 1684 198 0 0 0 chr6 144068696 144068718 -5448319 + (CAG)n Simple_repeat Simple_repeat 2 23 0 9 1684 411 21 0 0 chr6 144069125 144069173 -5447864 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1684 291 326 14 64 chr6 144069381 144069522 -5447515 + B1_Mur1 SINE Alu 2 135 -14 9 1684 450 0 0 0 chr6 144069542 144069592 -5447445 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1684 240 180 79 10 chr6 144069621 144069722 -5447315 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 9 1684 758 256 50 71 chr6 144069826 144070021 -5447016 + MTEb LTR MaLR 1 196 -183 9 1684 189 0 0 0 chr6 144070021 144070042 -5446995 + (TC)n Simple_repeat Simple_repeat 1 21 0 9 1684 419 0 20 0 chr6 144070044 144070095 -5446942 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1684 758 256 50 71 chr6 144070095 144070178 -5446859 + MTEb LTR MaLR 197 276 -103 9 1684 280 291 23 0 chr6 144070821 144070907 -5446130 + RSINE1 SINE B4 42 129 -36 9 1684 923 221 34 10 chr6 144071862 144072068 -5444969 - B3 SINE B2 -5 211 1 9 1684 531 0 0 0 chr6 144072198 144072257 -5444780 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1684 388 224 282 58 chr6 144072274 144072497 -5444540 + MTEa LTR MaLR 107 379 0 1 1684 360 336 54 15 chr6 144072689 144072819 -5444218 - RSINE1 SINE B4 -23 142 8 1 1684 215 346 90 24 chr6 144074286 144074463 -5442574 - MIRb SINE MIR -78 190 2 1 1684 519 255 14 47 chr6 144075899 144076047 -5440990 - ID_B1 SINE B4 -2 222 80 1 1684 259 223 108 78 chr6 144076053 144076155 -5440882 - B1F SINE Alu -3 146 42 1 1684 246 240 0 0 chr6 144078113 144078163 -5438874 + PB1D9 SINE Alu 67 116 -4 1 1684 1328 56 6 0 chr6 144079674 144079852 -5437185 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 1684 228 35 0 0 chr6 144079852 144079880 -5437157 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1684 621 283 31 10 chr6 144081776 144081969 -5435068 - B3A SINE B2 0 198 2 1 1684 295 267 102 15 chr6 144084860 144084997 -5432040 - ORSL DNA Tip100 -64 211 63 1 1684 192 83 41 20 chr6 144085082 144085131 -5431906 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1684 697 270 69 0 chr6 144085397 144085586 -5431451 - B3 SINE B2 -7 209 8 1 1684 1384 160 4 22 chr6 144085590 144085820 -5431217 - URR1A DNA MER1_type 0 226 1 1 1684 405 109 0 0 chr6 144087499 144087563 -5429474 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1684 331 250 53 53 chr6 144088763 144088877 -5428160 - PB1D10 SINE Alu -1 116 3 1 1684 252 0 0 0 chr6 144090335 144090363 -5426674 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 1 1684 288 224 0 0 chr6 144092174 144092241 -5424796 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1684 560 264 13 40 chr6 144092283 144092433 -5424604 - B3 SINE B2 -7 209 64 1 1684 258 32 0 0 chr6 144092487 144092518 -5424519 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1684 318 302 46 28 chr6 144093152 144093261 -5423776 - B3A SINE B2 -78 120 10 1 1684 304 316 55 41 chr6 144093542 144093687 -5423350 + B4 SINE B4 144 290 -2 1 1684 630 241 11 35 chr6 144095020 144095201 -5421836 + B3A SINE B2 42 216 0 1 1684 373 197 0 20 chr6 144095529 144095621 -5421416 - B1F SINE Alu 0 120 36 1 1684 374 337 10 0 chr6 144096759 144096860 -5420177 + B1F SINE Alu 2 103 -46 1 1684 469 270 75 38 chr6 144097623 144097835 -5419202 - B4 SINE B4 -70 222 3 1 1684 324 0 0 0 chr6 144099114 144099150 -5417887 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1684 30 0 0 0 chr6 144099507 144099537 -5417500 + AT_rich Low_complexity Low_complexity 1 30 0 1 1684 263 376 28 7 chr6 144100143 144100285 -5416752 + B4A SINE B4 146 290 -2 1 1684 189 147 0 0 chr6 144100373 144100407 -5416630 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1684 258 32 0 0 chr6 144101407 144101438 -5415599 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1684 468 0 0 0 chr6 144102131 144102183 -5414854 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1684 343 323 30 15 chr6 144102186 144102321 -5414716 - RSINE1 SINE B4 -25 140 4 1 1684 344 294 170 0 chr6 144102845 144102998 -5414039 + MIR SINE MIR 16 194 -68 1 1684 25 0 0 0 chr6 144104168 144104193 -5412844 + AT_rich Low_complexity Low_complexity 1 25 0 1 1684 198 0 0 0 chr6 144105147 144105169 -5411868 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 1 1684 971 152 0 11 chr6 144105171 144105350 -5411687 + GA-rich Low_complexity Low_complexity 3 179 0 1 1684 21 0 0 0 chr6 144107036 144107057 -5409980 + AT_rich Low_complexity Low_complexity 1 21 0 1 1684 241 263 178 72 chr6 144107861 144108041 -5408996 + MLT1D LTR MaLR 10 208 -297 1 1684 230 231 38 25 chr6 144108408 144108488 -5408549 + L2a LINE L2 3263 3343 -83 1 1684 225 231 30 15 chr6 144108795 144108861 -5408176 + B4A SINE B4 3 69 -223 1 1684 432 55 0 0 chr6 144109158 144109213 -5407824 + (TTCA)n Simple_repeat Simple_repeat 3 57 0 1 1684 316 271 9 0 chr6 144109441 144109548 -5407489 + (CA)n Simple_repeat Simple_repeat 2 109 0 1 1684 300 114 0 0 chr6 144109776 144109820 -5407217 - HAL1-3A_ME LINE L1 -841 2017 1974 1 1684 327 333 0 0 chr6 144109822 144109921 -5407116 + (TATG)n Simple_repeat Simple_repeat 1 99 0 1 1684 350 284 6 0 chr6 144109926 144110102 -5406935 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 1684 774 307 36 14 chr6 144110102 144110383 -5406654 - B4 SINE B4 0 292 6 1 1684 896 135 0 8 chr6 144110759 144111116 -5405921 + (TAGA)n Simple_repeat Simple_repeat 1 354 0 1 1684 249 57 0 0 chr6 144112526 144112561 -5404476 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 1 1684 318 268 26 26 chr6 144113013 144113128 -5403909 + PB1D10 SINE Alu 2 116 -1 1 1684 390 217 0 0 chr6 144113130 144113206 -5403831 + GA-rich Low_complexity Low_complexity 3 78 0 1 1684 1371 62 0 0 chr6 144113206 144113384 -5403653 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 1 1684 390 217 0 0 chr6 144113384 144113399 -5403638 + polypurine Low_complexity Low_complexity 79 93 0 1 1684 406 232 79 16 chr6 144113572 144113699 -5403338 + ID_B1 SINE B4 84 218 -6 1 1684 796 191 11 0 chr6 144116922 144117100 -5399937 + GA-rich Low_complexity Low_complexity 1 180 0 1 1684 225 269 0 0 chr6 144117126 144117193 -5399844 + GA-rich Low_complexity Low_complexity 3 69 0 1 1684 729 102 0 0 chr6 144117620 144117728 -5399309 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 1684 189 0 0 0 chr6 144118280 144118301 -5398736 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1684 243 0 0 0 chr6 144119712 144119739 -5397298 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1684 535 279 40 25 chr6 144119974 144120258 -5396779 + L1MB8 LINE L1 5594 5882 -302 1 1684 452 373 85 25 chr6 144120737 144121020 -5396017 + Tigger7 DNA MER2_type 1 300 -2191 1 1684 199 172 0 41 chr6 144121120 144121217 -5395820 + (CACCAT)n Simple_repeat Simple_repeat 3 95 0 1 1684 412 277 56 15 chr6 144121315 144121513 -5395524 + Tigger7 DNA MER2_type 2203 2408 -83 1 1684 1934 196 45 0 chr6 144124223 144124626 -5392411 - MTC LTR MaLR 0 421 1 1 1684 504 210 41 25 chr6 144126044 144126166 -5390871 - B1_Mur1 SINE Alu -2 147 24 1 1684 21 0 0 0 chr6 144126176 144126197 -5390840 + AT_rich Low_complexity Low_complexity 1 21 0 1 1684 457 374 48 0 chr6 144126402 144126549 -5390488 + RSINE1 SINE B4 2 155 -10 1 1684 549 0 0 0 chr6 144126550 144126611 -5390426 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 1 1684 885 185 0 0 chr6 144126611 144126789 -5390248 + GA-rich Low_complexity Low_complexity 1 178 0 1 1684 180 77 0 0 chr6 144128028 144128054 -5388983 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 1 1684 458 280 66 36 chr6 144128660 144128856 -5388181 - ID_B1 SINE B4 0 224 23 1 1684 486 0 0 0 chr6 144129017 144129071 -5387966 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1684 215 234 0 0 chr6 144130288 144130335 -5386702 + A-rich Low_complexity Low_complexity 2 48 0 1 1684 366 85 0 0 chr6 144130565 144130624 -5386413 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1684 2149 106 3 31 chr6 144130971 144131291 -5385746 - RLTR10E LTR ERVK 0 311 1 1 1684 948 160 0 0 chr6 144132129 144132551 -5384486 + (TG)n Simple_repeat Simple_repeat 1 422 0 1 1684 385 254 42 56 chr6 144132601 144132743 -5384294 - B4 SINE B4 -46 246 107 1 1684 237 65 0 0 chr6 144132925 144132956 -5384081 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1 1684 358 207 25 0 chr6 144133779 144133871 -5383166 - B1_Mur2 SINE Alu 0 149 46 1 1684 207 0 0 0 chr6 144134480 144134503 -5382534 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1684 555 342 63 59 chr6 144135119 144135389 -5381648 + B4A SINE B4 2 272 -20 1 1684 26 0 0 0 chr6 144136951 144136977 -5380060 + AT_rich Low_complexity Low_complexity 1 26 0 1 1684 237 163 0 0 chr6 144137192 144137241 -5379796 + GA-rich Low_complexity Low_complexity 4 52 0 1 1684 27 0 0 0 chr6 144137331 144137358 -5379679 + AT_rich Low_complexity Low_complexity 1 27 0 1 1684 216 279 22 34 chr6 144138967 144139056 -5377981 + (CATA)n Simple_repeat Simple_repeat 4 91 0 1 1684 26 0 0 0 chr6 144140008 144140034 -5377003 + AT_rich Low_complexity Low_complexity 1 26 0 1 1684 554 293 43 14 chr6 144140056 144140267 -5376770 + B4A SINE B4 29 245 -47 1 1684 401 314 104 57 chr6 144141105 144141385 -5375652 + L4 LINE RTE 1327 1619 -410 1 1684 25 31 0 0 chr6 144141556 144141588 -5375449 + AT_rich Low_complexity Low_complexity 1 32 0 1 1684 246 128 0 0 chr6 144141968 144142007 -5375030 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1684 652 245 0 59 chr6 144142251 144142403 -5374634 - B1_Mur1 SINE Alu 0 149 7 1 1684 4907 37 0 0 chr6 144142698 144143272 -5373765 + L1Md_A LINE L1 6009 6582 0 1 1684 292 253 22 11 chr6 144143665 144143757 -5373280 + GA-rich Low_complexity Low_complexity 4 96 0 1 1684 249 57 0 0 chr6 144143757 144143792 -5373245 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1684 533 261 28 7 chr6 144143972 144144115 -5372922 + B1F1 SINE Alu 4 149 0 1 1684 333 0 0 0 chr6 144144125 144144162 -5372875 + (TTAG)n Simple_repeat Simple_repeat 2 38 0 1 1684 250 315 27 27 chr6 144145398 144145509 -5371528 - MER33 DNA MER1_type -205 119 9 1 1684 204 40 0 0 chr6 144150596 144150621 -5366416 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1 1684 45 0 0 0 chr6 144150811 144150856 -5366181 + AT_rich Low_complexity Low_complexity 1 45 0 1 1684 36 40 0 0 chr6 144155830 144155880 -5361157 + AT_rich Low_complexity Low_complexity 1 50 0 1 1684 26 0 0 0 chr6 144156224 144156250 -5360787 + AT_rich Low_complexity Low_complexity 1 26 0 1 1684 577 134 18 0 chr6 144157988 144158100 -5358937 + CT-rich Low_complexity Low_complexity 1 114 0 1 1684 354 80 0 0 chr6 144158316 144158366 -5358671 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1684 444 91 0 0 chr6 144158591 144158657 -5358380 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1684 22 0 0 0 chr6 144159564 144159586 -5357451 + AT_rich Low_complexity Low_complexity 1 22 0 2 1684 306 0 0 0 chr6 144159960 144159994 -5357043 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1684 229 292 90 0 chr6 144160811 144160900 -5356137 + B4A SINE B4 2 98 -194 2 1684 25 0 0 0 chr6 144160940 144160965 -5356072 + AT_rich Low_complexity Low_complexity 1 25 0 2 1684 222 150 0 0 chr6 144161405 144161445 -5355592 + (TCC)n Simple_repeat Simple_repeat 3 42 0 2 1684 317 287 11 0 chr6 144161458 144161545 -5355492 - PB1D10 SINE Alu -20 97 10 2 1684 453 241 125 0 chr6 144162068 144162180 -5354857 + RSINE1 SINE B4 3 128 -37 2 1684 288 0 0 0 chr6 144162194 144162226 -5354811 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1684 406 278 66 90 chr6 144162486 144162652 -5354385 + B4 SINE B4 58 219 -73 2 1684 923 119 0 14 chr6 144162514 144162659 -5354378 + B1_Mus2 SINE Alu 5 147 0 2 1684 241 47 47 0 chr6 144162659 144162702 -5354335 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 2 1684 506 16 0 16 chr6 144163198 144163262 -5353775 + (GTTTG)n Simple_repeat Simple_repeat 2 64 0 2 1684 1153 36 0 0 chr6 144163262 144163400 -5353637 - B1_Mus2 SINE Alu -9 138 1 2 1684 32 26 0 0 chr6 144164047 144164086 -5352951 + AT_rich Low_complexity Low_complexity 1 39 0 2 1684 2066 234 43 37 chr6 144164138 144164169 -5352868 - Lx6 LINE L1 0 7460 7434 2 1684 676 211 108 6 chr6 144164169 144164345 -5352692 + B2_Mm2 SINE B2 2 195 0 2 1684 2066 234 43 37 chr6 144164345 144164801 -5352236 - Lx6 LINE L1 -27 7433 6970 2 1684 563 171 65 28 chr6 144164907 144165015 -5352022 - Lx6 LINE L1 -433 7027 6916 2 1684 28 0 0 0 chr6 144165426 144165454 -5351583 + AT_rich Low_complexity Low_complexity 1 28 0 2 1684 335 60 20 0 chr6 144165585 144165635 -5351402 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 2 1684 24 0 0 0 chr6 144166244 144166268 -5350769 + AT_rich Low_complexity Low_complexity 1 24 0 2 1684 548 300 40 45 chr6 144166682 144166881 -5350156 + B3A SINE B2 1 198 0 2 1684 338 341 119 42 chr6 144169059 144169319 -5347718 + B4A SINE B4 9 288 -4 2 1684 483 18 0 0 chr6 144169623 144169679 -5347358 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1684 483 63 0 0 chr6 144169837 144169900 -5347137 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1684 276 149 0 0 chr6 144170663 144170710 -5346327 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1684 271 189 54 42 chr6 144170864 144171030 -5346007 + (CATATA)n Simple_repeat Simple_repeat 1 168 0 2 1684 881 247 21 0 chr6 144171710 144171904 -5345133 - B3 SINE B2 -13 203 6 2 1684 252 184 0 0 chr6 144172040 144172089 -5344948 + GA-rich Low_complexity Low_complexity 2 50 0 2 1684 235 244 0 0 chr6 144172260 144172305 -5344732 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 2 1684 880 176 80 0 chr6 144172387 144172563 -5344474 - B3 SINE B2 -1 215 26 2 1684 438 20 0 0 chr6 144174029 144174080 -5342957 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1684 237 357 119 19 chr6 144174572 144174732 -5342305 - Tigger5 DNA MER2_type -2186 220 45 2 1684 4205 107 11 9 chr6 144174732 144175372 -5341665 + L1_Mus4 LINE L1 5996 6636 0 2 1684 554 282 0 21 chr6 144176372 144176517 -5340520 + RSINE1 SINE B4 2 143 -22 2 1684 824 289 86 20 chr6 144177036 144177413 -5339624 - MTD LTR MaLR -32 387 1 2 1684 522 163 0 0 chr6 144178525 144178623 -5338414 + (TA)n Simple_repeat Simple_repeat 2 99 0 2 210 798 235 16 11 chr6 144179158 144179343 -5337694 - B3 SINE B2 -6 210 25 2 1685 225 186 152 0 chr6 144179339 144179398 -5337639 + B3 SINE B2 149 216 0 2 1685 267 250 9 111 chr6 144179436 144179544 -5337493 + Tigger16b DNA TcMar 226 322 0 2 1685 265 259 40 97 chr6 144179544 144179560 -5337477 + Tigger16b DNA Tigger 181 297 -40 2 1685 1807 156 19 84 chr6 144180078 144180457 -5336580 + ORR1B1 LTR MaLR 41 394 0 2 1685 755 181 7 0 chr6 144180762 144180917 -5336120 + CT-rich Low_complexity Low_complexity 2 157 0 2 1685 379 205 124 54 chr6 144180917 144181046 -5335991 - B1F SINE Alu -7 142 5 2 1685 21 0 0 0 chr6 144182299 144182320 -5334717 + AT_rich Low_complexity Low_complexity 1 21 0 2 1685 1328 236 145 3 chr6 144182658 144183024 -5334013 + MTD LTR MaLR 1 418 -1 2 1685 253 314 12 0 chr6 144183575 144183661 -5333376 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 1685 21 0 0 0 chr6 144183680 144183701 -5333336 + AT_rich Low_complexity Low_complexity 1 21 0 2 1685 759 178 17 0 chr6 144184088 144184262 -5332775 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 2 1685 487 308 8 8 chr6 144187118 144187252 -5329785 + RSINE1 SINE B4 11 144 -21 2 1685 237 65 0 0 chr6 144187446 144187477 -5329560 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1685 180 0 0 0 chr6 144187482 144187502 -5329535 + (TTG)n Simple_repeat Simple_repeat 1 20 0 2 1685 208 328 49 50 chr6 144188642 144188776 -5328261 + L2b LINE L2 3082 3211 -176 2 1685 380 149 0 26 chr6 144188899 144188975 -5328062 + (TGAA)n Simple_repeat Simple_repeat 3 76 0 2 1685 281 296 40 47 chr6 144189178 144189396 -5327641 + L1M4b LINE L1 1316 1510 -5394 2 1685 411 21 0 0 chr6 144189917 144189965 -5327072 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1685 230 279 0 14 chr6 144190041 144190053 -5326984 + B4A SINE B4 74 84 -208 2 1685 274 288 82 15 chr6 144190053 144190187 -5326850 + B1F1 SINE Alu 1 143 -6 2 1685 801 237 6 0 chr6 144190342 144190498 -5326539 + B3A SINE B2 6 162 -36 2 1685 387 0 0 0 chr6 144190499 144190542 -5326495 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1685 414 0 0 0 chr6 144190615 144190661 -5326376 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1685 836 295 65 23 chr6 144190759 144191324 -5325713 + L1M4b LINE L1 3618 4206 -2800 2 1685 749 76 45 34 chr6 144191393 144191570 -5325467 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 2 1685 414 0 0 0 chr6 144191598 144191644 -5325393 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1685 1162 219 57 7 chr6 144191689 144192014 -5325023 - MTD LTR MaLR -63 356 2 2 1685 237 242 120 11 chr6 144192036 144192128 -5324909 + L1M4b LINE L1 4345 4446 -2560 2 1685 396 0 0 0 chr6 144196854 144196898 -5320139 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1685 4897 71 5 17 chr6 144196972 144197631 -5319406 - L1_Mus3 LINE L1 0 6638 5988 2 1685 243 125 42 0 chr6 144198567 144198639 -5318398 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 2 1685 1249 41 7 0 chr6 144198639 144198786 -5318251 - B1_Mus1 SINE Alu 0 148 1 2 1685 636 241 78 33 chr6 144198790 144198970 -5318067 + ID_B1 SINE B4 19 206 -18 2 1685 507 33 0 0 chr6 144200002 144200063 -5316974 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1685 585 0 0 0 chr6 144200692 144200757 -5316280 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1685 837 30 0 0 chr6 144202679 144202779 -5314258 + (TC)n Simple_repeat Simple_repeat 1 100 0 2 1685 234 62 0 0 chr6 144202779 144202810 -5314227 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1685 981 254 133 18 chr6 144203131 144203450 -5313587 + Lx9 LINE L1 7157 7504 -140 2 1685 408 55 0 0 chr6 144203450 144203505 -5313532 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1685 981 254 133 18 chr6 144203505 144203622 -5313415 + Lx9 LINE L1 7505 7643 -1 2 1685 330 49 32 16 chr6 144205687 144205749 -5311288 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 2 1685 396 0 0 0 chr6 144207474 144207518 -5309519 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1685 433 205 12 0 chr6 144207749 144207832 -5309205 + B1_Mur3 SINE Alu 1 84 -65 2 1685 486 0 0 0 chr6 144207849 144207903 -5309134 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1685 394 255 92 0 chr6 144208020 144208118 -5308919 + ID_B1 SINE B4 118 224 0 2 1685 2960 208 89 8 chr6 144209570 144210218 -5306819 - RMER1C Other Other -13 1329 629 2 1685 239 288 13 27 chr6 144210260 144210335 -5306702 + B3A SINE B2 7 80 -118 2 1685 915 109 0 0 chr6 144210478 144210625 -5306412 + (CA)n Simple_repeat Simple_repeat 2 148 0 2 1685 933 228 34 19 chr6 144211184 144211390 -5305647 - B3 SINE B2 -7 209 1 2 1685 424 278 24 0 chr6 144211956 144212082 -5304955 + B4A SINE B4 8 136 -156 2 1685 587 318 65 31 chr6 144212285 144212299 -5304738 - B4A SINE B4 -5 287 275 2 1685 459 0 0 0 chr6 144212299 144212350 -5304687 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 1685 360 0 0 0 chr6 144212350 144212390 -5304647 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1685 587 318 65 31 chr6 144212390 144212634 -5304403 - B4A SINE B4 -18 274 20 2 1685 180 111 0 0 chr6 144214938 144214965 -5302072 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2 1685 878 218 19 10 chr6 144215046 144215254 -5301783 + B3 SINE B2 1 210 -6 2 1685 441 144 42 8 chr6 144216589 144216708 -5300329 + GA-rich Low_complexity Low_complexity 1 123 0 2 1685 764 63 27 44 chr6 144216708 144216891 -5300146 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1685 233 57 29 0 chr6 144217428 144217463 -5299574 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2 1685 318 50 0 0 chr6 144217586 144217626 -5299411 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1685 547 275 139 10 chr6 144217764 144217966 -5299071 + MTEa LTR MaLR 17 244 -135 2 1685 208 171 24 0 chr6 144218480 144218521 -5298516 + (TTG)n Simple_repeat Simple_repeat 2 43 0 2 1685 747 224 63 91 chr6 144219251 144219472 -5297565 + B3 SINE B2 1 215 -1 2 1685 1225 159 9 18 chr6 144219938 144220156 -5296881 - B3 SINE B2 0 216 1 2 1685 342 236 61 35 chr6 144220966 144221080 -5295957 + PB1D10 SINE Alu 1 117 0 2 1685 2765 75 49 5 chr6 144222098 144222484 -5294553 + RLTR9D LTR ERVK 1 403 0 2 1685 452 287 15 15 chr6 144223367 144223498 -5293539 + B3 SINE B2 7 137 -79 3 1685 1960 93 63 3 chr6 144224971 144225272 -5291765 + ORR1A2 LTR MaLR 1 319 -8 3 1685 399 361 10 91 chr6 144225804 144226002 -5291035 - B3A SINE B2 -15 183 2 3 1685 279 0 0 0 chr6 144227580 144227611 -5289426 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 1685 1029 43 0 21 chr6 144227649 144227793 -5289244 - B1_Mus1 SINE Alu -1 147 7 3 1685 21 0 0 0 chr6 144228112 144228133 -5288904 + AT_rich Low_complexity Low_complexity 1 21 0 3 1685 321 281 40 17 chr6 144228481 144228655 -5288382 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 3 1685 230 311 81 0 chr6 144228837 144228911 -5288126 + ID4 SINE ID 1 80 -3 3 1685 225 0 0 0 chr6 144228921 144228946 -5288091 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 1685 440 321 60 60 chr6 144229598 144230085 -5286952 + L1MB8 LINE L1 5639 6125 -53 3 1685 1118 279 50 18 chr6 144230171 144230514 -5286523 - ORR1E LTR MaLR 0 359 6 3 1685 528 120 0 29 chr6 144230620 144230723 -5286314 + (GGGA)n Simple_repeat Simple_repeat 3 102 0 3 1685 216 149 0 0 chr6 144231770 144231817 -5285220 + (G)n Simple_repeat Simple_repeat 1 47 0 3 1685 623 226 12 42 chr6 144232986 144233152 -5283885 + B3A SINE B2 20 180 -18 3 1685 189 0 0 0 chr6 144233323 144233344 -5283693 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1685 417 20 0 0 chr6 144234216 144234266 -5282771 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1685 502 218 119 43 chr6 144235165 144235440 -5281597 + MTD LTR MaLR 50 405 -14 3 1685 304 57 54 54 chr6 144235843 144235899 -5281138 - PB1D10 SINE Alu 0 117 62 3 1685 485 245 146 6 chr6 144235849 144236013 -5281024 - ID_B1 SINE B4 -3 221 35 3 1685 22 0 0 0 chr6 144238378 144238400 -5278637 + AT_rich Low_complexity Low_complexity 1 22 0 3 1685 198 0 0 0 chr6 144238961 144238983 -5278054 + (CATA)n Simple_repeat Simple_repeat 2 23 0 3 1685 434 18 18 0 chr6 144239924 144239979 -5277058 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1685 221 307 61 9 chr6 144239985 144240100 -5276937 - MIR SINE MIR -77 185 65 3 1685 253 191 0 0 chr6 144240443 144240485 -5276552 + polypurine Low_complexity Low_complexity 1 42 0 3 1685 926 116 0 7 chr6 144240490 144240542 -5276495 + (GAA)n Simple_repeat Simple_repeat 3 54 0 3 1685 1242 100 0 0 chr6 144240542 144240722 -5276315 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 1685 926 116 0 7 chr6 144240722 144240817 -5276220 + (GAA)n Simple_repeat Simple_repeat 1 95 0 3 1685 309 26 0 0 chr6 144241958 144241996 -5275041 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1685 237 347 51 0 chr6 144243191 144243289 -5273748 + L2b LINE L2 3273 3375 0 3 1685 246 315 68 0 chr6 144243905 144243978 -5273059 + B4A SINE B4 49 126 -166 3 1685 22 35 0 0 chr6 144244073 144244102 -5272935 + AT_rich Low_complexity Low_complexity 1 29 0 3 1685 392 254 112 0 chr6 144245183 144245317 -5271720 + B1_Mur1 SINE Alu 1 149 0 3 1685 486 0 0 0 chr6 144245430 144245484 -5271553 + (CATA)n Simple_repeat Simple_repeat 2 55 0 3 1685 840 196 2 45 chr6 144246654 144246829 -5270208 + RSINE1 SINE B4 1 165 0 3 1685 222 37 0 0 chr6 144246844 144246871 -5270166 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1685 351 0 36 36 chr6 144247145 144247201 -5269836 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 3 1685 582 298 17 23 chr6 144248958 144249133 -5267904 + B4A SINE B4 55 228 -64 3 1685 264 264 14 27 chr6 144249154 144249228 -5267809 + B4A SINE B4 214 286 -6 3 1685 231 299 14 29 chr6 144249248 144249386 -5267651 + (CATATA)n Simple_repeat Simple_repeat 4 139 0 3 1685 287 277 95 73 chr6 144251056 144251090 -5265947 - B2_Mm1t SINE B2 -10 183 148 3 1685 207 0 0 0 chr6 144251090 144251113 -5265924 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1685 576 229 78 15 chr6 144251113 144251257 -5265780 - B3A SINE B2 -47 151 1 3 1685 914 171 14 0 chr6 144251697 144251914 -5265123 + GA-rich Low_complexity Low_complexity 1 219 0 3 1685 186 43 0 0 chr6 144252397 144252420 -5264617 + (TTGG)n Simple_repeat Simple_repeat 3 25 0 3 1685 206 118 0 0 chr6 144252717 144252751 -5264286 + (TAA)n Simple_repeat Simple_repeat 1 34 0 3 1685 872 255 39 5 chr6 144252761 144252966 -5264071 + B3 SINE B2 1 212 -4 3 1685 243 61 0 0 chr6 144255208 144255241 -5261796 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1685 895 303 10 67 chr6 144257645 144257942 -5259095 - B4 SINE B4 0 292 13 3 1685 308 130 0 85 chr6 144258044 144258057 -5258980 + MT2B LTR ERVL 3 11 -590 3 1685 2046 122 7 118 chr6 144258057 144258514 -5258523 + RMER17C LTR ERVK 2 407 -3 3 1685 308 130 0 85 chr6 144258514 144258559 -5258478 + MT2B LTR ERVL 12 56 -545 3 1685 24 0 0 0 chr6 144259370 144259394 -5257643 + AT_rich Low_complexity Low_complexity 1 24 0 3 1685 277 322 8 8 chr6 144259423 144259542 -5257495 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 3 1685 696 54 0 0 chr6 144260646 144260739 -5256298 + (CCTA)n Simple_repeat Simple_repeat 3 95 0 3 1685 263 261 62 115 chr6 144263885 144264015 -5253022 - ORR1E LTR MaLR -9 370 248 3 1685 692 241 40 11 chr6 144264031 144264207 -5252830 - ORR1E LTR MaLR -174 185 5 3 1685 1004 144 17 6 chr6 144264318 144264492 -5252545 + B2_Mm2 SINE B2 2 177 -18 3 1685 203 0 37 0 chr6 144264598 144264625 -5252412 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1685 667 265 12 0 chr6 144264625 144264787 -5252250 - B3A SINE B2 -34 164 1 3 1685 1719 174 125 34 chr6 144265498 144265684 -5251353 + ORR1C2 LTR MaLR 1 214 -170 3 1685 189 94 0 0 chr6 144265684 144265716 -5251321 + (TCTCTG)n Simple_repeat Simple_repeat 3 34 0 3 1685 1719 174 125 34 chr6 144265716 144265881 -5251156 + ORR1C2 LTR MaLR 215 384 0 3 1685 211 267 17 0 chr6 144267083 144267143 -5249894 + GA-rich Low_complexity Low_complexity 1 61 0 3 1685 2642 55 31 5 chr6 144267143 144267525 -5249512 + MTB LTR MaLR 1 392 -8 3 1685 277 280 13 13 chr6 144267528 144267604 -5249433 + GA-rich Low_complexity Low_complexity 6 81 0 3 1685 1202 36 0 0 chr6 144267679 144267817 -5249220 + B1_Mus1 SINE Alu 2 139 -9 3 1685 357 43 0 0 chr6 144267817 144267864 -5249173 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1685 454 277 11 0 chr6 144269249 144269390 -5247647 + B1F SINE Alu 1 146 -3 3 1685 1062 123 0 0 chr6 144269832 144270108 -5246929 + (TGG)n Simple_repeat Simple_repeat 1 276 0 3 1685 795 304 56 52 chr6 144270108 144270375 -5246662 + B4A SINE B4 19 286 -6 3 1685 567 193 39 50 chr6 144271812 144271969 -5245068 + ID_B1 SINE B4 86 243 -49 3 1685 1322 40 20 4 chr6 144272368 144272822 -5244215 + (TAGA)n Simple_repeat Simple_repeat 1 461 0 3 1685 21 0 0 0 chr6 144274867 144274888 -5242149 + AT_rich Low_complexity Low_complexity 1 21 0 3 1685 329 145 16 0 chr6 144275254 144275316 -5241721 + CT-rich Low_complexity Low_complexity 3 65 0 3 1685 259 321 65 19 chr6 144275434 144275542 -5241495 - B1F SINE Alu -32 117 5 3 1685 332 298 88 31 chr6 144275741 144275935 -5241102 - L1M5 LINE L1 -1121 5025 4821 3 1685 396 130 0 0 chr6 144276212 144276281 -5240756 + (TC)n Simple_repeat Simple_repeat 1 69 0 3 1685 585 42 0 0 chr6 144276328 144276400 -5240637 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1685 320 313 55 38 chr6 144276915 144277260 -5239777 - L1MB4 LINE L1 -31 6149 5799 3 1685 730 292 57 4 chr6 144277274 144277518 -5239519 + MTE2b LTR MaLR 3 259 -120 3 1685 602 181 133 32 chr6 144277608 144277796 -5239241 + Lx9 LINE L1 7437 7643 -1 3 1685 306 243 192 10 chr6 144278605 144278709 -5238328 + RSINE1 SINE B4 12 134 -31 3 1685 453 90 0 0 chr6 144278719 144278786 -5238251 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1685 333 0 0 0 chr6 144279560 144279597 -5237440 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1685 386 301 48 14 chr6 144281463 144281608 -5235429 + B4A SINE B4 1 150 -142 3 1685 450 0 0 0 chr6 144281725 144281775 -5235262 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1685 246 32 0 0 chr6 144282368 144282399 -5234638 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1685 244 294 148 32 chr6 144283446 144283819 -5233218 + L1ME2z LINE L1 5614 6029 -415 3 1685 263 234 37 30 chr6 144283966 144284059 -5232978 + B1F SINE Alu 5 94 -55 3 1685 300 287 23 0 chr6 144284633 144284720 -5232317 + RSINE1 SINE B4 53 141 -24 3 1685 255 31 0 0 chr6 144284743 144284775 -5232262 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1685 1041 292 42 30 chr6 144284951 144285379 -5231658 + Lx8 LINE L1 6807 7239 -234 3 1685 856 251 19 5 chr6 144288181 144288393 -5228644 - B3 SINE B2 0 216 2 3 1685 516 266 43 25 chr6 144288892 144289021 -5228016 + RSINE1 SINE B4 1 130 -35 3 1685 305 24 24 0 chr6 144289021 144289063 -5227974 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1685 516 266 43 25 chr6 144289063 144289095 -5227942 + RSINE1 SINE B4 131 165 0 3 1685 227 312 105 14 chr6 144289351 144289494 -5227543 - MER20 DNA MER1_type -57 162 7 3 1685 333 0 0 0 chr6 144290964 144291001 -5226036 + (CTA)n Simple_repeat Simple_repeat 1 37 0 3 1685 216 0 0 0 chr6 144291001 144291025 -5226012 + (TAA)n Simple_repeat Simple_repeat 3 26 0 3 1685 54 16 0 0 chr6 144291212 144291273 -5225764 + AT_rich Low_complexity Low_complexity 1 61 0 3 1685 21 0 0 0 chr6 144291293 144291314 -5225723 + AT_rich Low_complexity Low_complexity 1 21 0 3 1685 224 272 19 25 chr6 144292457 144292619 -5224418 + (TTAAA)n Simple_repeat Simple_repeat 3 163 0 3 1685 234 223 44 9 chr6 144292458 144292571 -5224466 + (TTTAA)n Simple_repeat Simple_repeat 1 117 0 3 1685 693 92 0 0 chr6 144293018 144293116 -5223921 + (GA)n Simple_repeat Simple_repeat 1 98 0 3 1685 305 287 20 10 chr6 144293392 144293494 -5223543 - Charlie4a DNA MER1_type -36 472 370 3 1685 977 192 51 9 chr6 144294048 144294263 -5222774 - URR1B DNA MER1_type 0 225 2 3 1685 525 304 22 0 chr6 144294377 144294512 -5222525 + RSINE1 SINE B4 3 140 -25 4 1685 378 0 0 0 chr6 144294523 144294565 -5222472 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1685 631 214 7 30 chr6 144295000 144295135 -5221902 - B3 SINE B2 0 216 85 4 1685 458 310 117 3 chr6 144295247 144295538 -5221499 - MER44A DNA MER2_type -9 330 7 4 1685 231 200 0 20 chr6 144295639 144295690 -5221347 - L1M5 LINE L1 -386 5854 5805 4 1685 899 272 50 32 chr6 144295735 144296073 -5220964 - L1ME3A LINE L1 -319 5854 5511 4 1685 599 269 29 12 chr6 144296352 144296525 -5220512 - B3A SINE B2 -21 177 2 4 1685 414 0 0 0 chr6 144296732 144296778 -5220259 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1685 602 247 46 17 chr6 144296810 144296983 -5220054 - B3A SINE B2 -17 181 4 4 1685 524 56 14 0 chr6 144297045 144297117 -5219920 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 1685 426 305 42 21 chr6 144297537 144297548 -5219489 + B1F2 SINE Alu 1 143 -2 4 1685 573 246 0 23 chr6 144297548 144297677 -5219360 + ID_B1 SINE B4 93 218 -6 4 1685 370 224 13 0 chr6 144298690 144298766 -5218271 + B4 SINE B4 214 290 -2 4 1685 213 273 0 0 chr6 144298770 144298825 -5218212 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1685 517 277 15 36 chr6 144299170 144299365 -5217672 + B3A SINE B2 3 193 -5 4 1685 260 222 32 0 chr6 144299865 144299928 -5217109 + ID_B1 SINE B4 132 196 -28 4 1685 607 297 91 15 chr6 144299935 144300277 -5216760 + ORR1D2 LTR MaLR 3 370 0 4 1685 282 116 0 0 chr6 144300410 144300453 -5216584 + (GGAGAA)n Simple_repeat Simple_repeat 5 47 0 4 1685 189 147 0 0 chr6 144300524 144300558 -5216479 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1685 189 0 0 0 chr6 144303081 144303102 -5213935 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1685 1802 89 8 8 chr6 144303134 144303384 -5213653 - L1_Mus1 LINE L1 0 6567 6318 4 1685 1264 97 0 11 chr6 144303866 144304044 -5212993 + B2_Mm2 SINE B2 2 177 -18 4 1685 207 0 0 0 chr6 144304062 144304085 -5212952 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1685 524 278 0 0 chr6 144304572 144304716 -5212321 - B1F1 SINE Alu -1 148 5 4 1685 399 260 142 32 chr6 144305061 144305216 -5211821 + B4A SINE B4 1 172 -120 4 1685 623 146 25 0 chr6 144305407 144305565 -5211472 + (TAGA)n Simple_repeat Simple_repeat 3 164 0 4 1685 445 331 42 61 chr6 144306466 144306727 -5210310 - B4A SINE B4 -2 290 35 4 1685 914 104 97 0 chr6 144306764 144306898 -5210139 - B1_Mus2 SINE Alu 0 147 1 4 1685 783 284 28 33 chr6 144307418 144307633 -5209404 - B3 SINE B2 -2 214 1 4 1685 229 247 50 30 chr6 144307674 144307774 -5209263 - PB1D7 SINE Alu -18 102 1 4 1685 21 0 0 0 chr6 144307778 144307799 -5209238 + AT_rich Low_complexity Low_complexity 1 21 0 4 1685 743 179 0 6 chr6 144308329 144308509 -5208528 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1685 344 347 8 8 chr6 144308537 144308656 -5208381 - B4A SINE B4 -20 272 154 4 1686 198 0 0 0 chr6 144311053 144311075 -5205962 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1686 988 45 0 22 chr6 144311075 144311200 -5205837 - B1_Mus1 SINE Alu -10 138 14 4 1686 270 0 0 0 chr6 144311223 144311253 -5205784 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1686 297 0 0 0 chr6 144311253 144311285 -5205752 + (CG)n Simple_repeat Simple_repeat 2 34 0 4 1686 321 258 75 25 chr6 144311355 144311475 -5205562 + B3A SINE B2 80 203 -13 4 1686 296 261 0 32 chr6 144311651 144311746 -5205291 - PB1 SINE Alu -14 113 22 4 1686 319 302 40 67 chr6 144312504 144312653 -5204384 - ORR1E LTR MaLR -133 226 82 4 1686 535 204 76 0 chr6 144313683 144313815 -5203222 - B1_Mur1 SINE Alu -7 142 1 4 1686 203 256 0 0 chr6 144314075 144314118 -5202919 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1686 601 341 62 0 chr6 144314169 144314380 -5202657 + ID_B1 SINE B4 1 224 0 4 1686 448 265 85 95 chr6 144317985 144318185 -5198852 + B3A SINE B2 1 198 0 4 1686 1286 184 92 41 chr6 144318396 144318691 -5198346 + RMER1C Other Other 1028 1337 -5 4 1686 458 309 11 22 chr6 144319318 144319497 -5197540 + (CGGGG)n Simple_repeat Simple_repeat 1 177 0 4 1686 315 347 41 18 chr6 144319863 144320033 -5197004 + L1MEc LINE L1 53 226 -6174 4 1686 755 213 16 37 chr6 144320248 144320415 -5196622 + B3 SINE B2 1 166 -50 4 1686 464 32 16 0 chr6 144320415 144320477 -5196560 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1686 755 213 16 37 chr6 144320477 144320499 -5196538 + B3 SINE B2 167 186 -30 4 1686 247 282 248 0 chr6 144320574 144320691 -5196346 + L1MEc LINE L1 606 751 -5649 4 1686 225 0 0 0 chr6 144320691 144320716 -5196321 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1686 44 20 0 0 chr6 144320861 144320912 -5196125 + AT_rich Low_complexity Low_complexity 1 51 0 4 1686 221 238 0 12 chr6 144320996 144321077 -5195960 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1686 849 269 10 0 chr6 144322971 144323172 -5193865 + B3 SINE B2 5 207 -9 4 1686 260 137 0 19 chr6 144323314 144323366 -5193671 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1686 323 269 89 51 chr6 144323413 144323570 -5193467 + L1MA10 LINE L1 6164 6326 -8 4 1686 201 125 0 51 chr6 144325850 144325909 -5191128 + T-rich Low_complexity Low_complexity 4 59 0 4 1686 1187 261 53 8 chr6 144326001 144326356 -5190681 + MTEb LTR MaLR 1 371 -8 4 1686 494 332 44 20 chr6 144327444 144327647 -5189390 + ID_B1 SINE B4 17 224 0 4 1686 279 0 0 0 chr6 144327757 144327788 -5189249 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1686 213 118 192 19 chr6 144328533 144328585 -5188452 + B3A SINE B2 1 61 -137 4 1686 27 0 0 0 chr6 144331300 144331327 -5185710 + AT_rich Low_complexity Low_complexity 1 27 0 4 1686 453 285 90 67 chr6 144332059 144332376 -5184661 + ORR1D1 LTR MaLR 37 379 0 4 1686 555 194 196 55 chr6 144332540 144332862 -5184175 - MTD LTR MaLR -14 405 11 4 1686 322 222 0 22 chr6 144333726 144333818 -5183219 - MT2A LTR ERVL -443 90 1 4 1686 355 356 60 33 chr6 144334042 144334193 -5182844 + RSINE1 SINE B4 3 157 -8 4 1686 665 293 73 26 chr6 144334333 144334606 -5182431 + B4A SINE B4 6 291 -1 4 1686 357 378 0 0 chr6 144334669 144334849 -5182188 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1686 577 127 44 6 chr6 144336924 144337082 -5179955 + (TCTA)n Simple_repeat Simple_repeat 3 166 0 4 1686 209 167 41 20 chr6 144337084 144337133 -5179904 + CT-rich Low_complexity Low_complexity 4 53 0 4 1686 180 0 0 0 chr6 144338785 144338805 -5178232 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 4 1686 730 284 72 5 chr6 144339151 144339494 -5177543 - MTD LTR MaLR -12 407 15 4 1686 2529 125 10 0 chr6 144339602 144339995 -5177042 + Lx3B LINE L1 6575 6971 -2 4 1686 702 148 7 21 chr6 144340368 144340513 -5176524 + CT-rich Low_complexity Low_complexity 3 145 0 4 1686 342 0 0 0 chr6 144340513 144340551 -5176486 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 4 1686 950 63 0 0 chr6 144340583 144340710 -5176327 - B1_Mus1 SINE Alu 0 148 22 4 1686 317 239 19 23 chr6 144340940 144341206 -5175831 + (TATG)n Simple_repeat Simple_repeat 1 264 0 4 1686 332 226 7 40 chr6 144341233 144341385 -5175652 + (TATG)n Simple_repeat Simple_repeat 4 150 0 4 1686 393 298 18 0 chr6 144341394 144341508 -5175529 + (TG)n Simple_repeat Simple_repeat 1 116 0 4 1686 378 239 24 6 chr6 144341512 144341676 -5175361 + (TATG)n Simple_repeat Simple_repeat 4 170 0 4 1686 215 261 14 42 chr6 144343254 144343326 -5173711 - ID4 SINE ID -11 72 3 4 1686 204 282 0 0 chr6 144344774 144344852 -5172185 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 1686 871 285 78 36 chr6 144344918 144345278 -5171759 + MTE2b LTR MaLR 1 375 -4 4 1686 353 255 87 87 chr6 144345354 144345504 -5171533 + ORR1E LTR MaLR 44 193 -166 4 1686 249 226 71 22 chr6 144346485 144346711 -5170326 - RMER17D LTR ERVK -409 480 244 4 1686 225 0 0 0 chr6 144347671 144347696 -5169341 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1686 189 0 0 0 chr6 144347801 144347822 -5169215 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1686 269 245 10 0 chr6 144347895 144347997 -5169040 + (TG)n Simple_repeat Simple_repeat 1 103 0 4 1686 297 0 0 0 chr6 144348122 144348155 -5168882 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1686 387 0 0 0 chr6 144348229 144348272 -5168765 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1686 258 32 0 0 chr6 144348337 144348368 -5168669 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1686 315 0 0 0 chr6 144348439 144348474 -5168563 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1686 511 219 189 63 chr6 144348478 144348653 -5168384 - B3 SINE B2 -17 199 3 4 1686 1188 119 23 0 chr6 144349007 144349184 -5167853 + B2_Mm2 SINE B2 2 182 -13 4 1686 450 165 293 0 chr6 144349194 144349327 -5167710 - RMER15 LTR ERVL -60 515 344 4 1686 320 241 98 51 chr6 144349352 144349529 -5167508 - MIR SINE MIR -66 202 14 4 1686 420 20 0 0 chr6 144350569 144350618 -5166419 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 4 1686 450 285 115 11 chr6 144350671 144350845 -5166192 - B4A SINE B4 -99 193 2 4 1686 366 258 40 8 chr6 144351035 144351160 -5165877 - B1_Mur2 SINE Alu -2 147 19 4 1686 531 31 0 0 chr6 144351673 144351738 -5165299 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1686 1954 184 72 14 chr6 144351738 144352156 -5164881 - RLTR20B1 LTR ERVK -121 442 1 4 1686 195 42 0 0 chr6 144352161 144352185 -5164852 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1686 186 43 0 0 chr6 144352650 144352673 -5164364 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 5 1686 432 219 0 0 chr6 144352676 144352840 -5164197 + CT-rich Low_complexity Low_complexity 1 164 0 5 1686 548 274 38 13 chr6 144353055 144353214 -5163823 + RSINE1 SINE B4 3 165 0 5 1686 206 245 10 0 chr6 144353230 144353328 -5163709 + (CA)n Simple_repeat Simple_repeat 1 99 0 5 1686 585 76 0 0 chr6 144353384 144353463 -5163574 + (GGA)n Simple_repeat Simple_repeat 2 80 0 5 1686 691 282 64 113 chr6 144354113 144354407 -5162630 + MTE2a LTR MaLR 1 273 -106 5 1686 207 0 0 0 chr6 144354407 144354430 -5162607 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 5 1686 691 282 64 113 chr6 144354430 144354523 -5162514 + MTE2a LTR MaLR 274 368 -11 5 1686 757 302 19 0 chr6 144354559 144354771 -5162266 + ID_B1 SINE B4 2 217 -7 5 1686 198 103 0 0 chr6 144355242 144355271 -5161766 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1686 561 244 30 15 chr6 144356226 144356359 -5160678 + B1_Mur4 SINE Alu 2 136 -14 5 1686 647 289 27 32 chr6 144356496 144356682 -5160355 - ID_B1 SINE B4 -19 205 21 5 1686 391 224 0 0 chr6 144358688 144358764 -5158273 - ID4 SINE ID 0 83 8 5 1686 582 244 175 20 chr6 144361991 144362242 -5154795 + B4A SINE B4 3 292 0 5 1686 731 113 8 8 chr6 144364661 144364786 -5152251 - B1_Mus2 SINE Alu 0 147 23 5 1686 813 253 101 110 chr6 144364992 144365205 -5151832 - Lx8 LINE L1 0 7473 7250 5 1686 854 83 0 14 chr6 144365205 144365352 -5151685 + (TCTCTG)n Simple_repeat Simple_repeat 6 150 0 5 1686 813 253 101 110 chr6 144365352 144365556 -5151481 - Lx8 LINE L1 -224 7249 7060 5 1686 289 351 87 51 chr6 144365878 144366211 -5150826 + ORR1E LTR MaLR 4 348 -11 5 1686 1125 218 38 142 chr6 144366586 144367009 -5150028 + MTE2a LTR MaLR 1 379 0 5 1686 248 344 30 38 chr6 144368377 144368510 -5148527 + MIRc SINE MIR 2 133 -135 5 1686 723 228 150 5 chr6 144368894 144369101 -5147936 + B4A SINE B4 1 237 -55 5 1686 228 250 0 0 chr6 144369196 144369276 -5147761 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1686 21 0 0 0 chr6 144369980 144370001 -5147036 + AT_rich Low_complexity Low_complexity 1 21 0 5 1686 198 167 0 0 chr6 144370016 144370052 -5146985 + (TATG)n Simple_repeat Simple_repeat 3 38 0 5 1686 328 69 69 0 chr6 144371524 144371582 -5145455 + (GGAGA)n Simple_repeat Simple_repeat 1 62 0 5 1686 288 0 0 0 chr6 144371591 144371623 -5145414 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1686 557 297 131 15 chr6 144371624 144371884 -5145153 - B4 SINE B4 0 292 3 5 1686 506 286 88 27 chr6 144371919 144372214 -5144823 - L1MC4 LINE L1 -602 7440 7128 5 1686 499 268 34 49 chr6 144372225 144372429 -5144608 - B3 SINE B2 -14 202 2 5 1686 2170 89 13 0 chr6 144372725 144373040 -5143997 - ORR1A2 LTR MaLR -8 319 1 5 1686 290 380 8 0 chr6 144376383 144376512 -5140525 + (TGAA)n Simple_repeat Simple_repeat 4 133 0 5 1686 834 184 91 5 chr6 144377897 144378083 -5138954 + B3 SINE B2 7 208 -8 5 1686 212 0 0 35 chr6 144378570 144378599 -5138438 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1686 202 146 0 24 chr6 144379891 144379933 -5137104 + (TCCTG)n Simple_repeat Simple_repeat 2 42 0 5 1686 572 182 16 0 chr6 144380135 144380256 -5136781 + (CATATA)n Simple_repeat Simple_repeat 3 125 0 5 1686 304 282 11 45 chr6 144380256 144380345 -5136692 + HAL1-3A_ME LINE L1 1974 2059 -799 5 1686 39 60 0 0 chr6 144380351 144380418 -5136619 + AT_rich Low_complexity Low_complexity 1 67 0 5 1686 693 201 196 0 chr6 144380985 144381209 -5135828 + RCHARR1 DNA MER1_type 192 459 -515 5 1686 1488 227 78 3 chr6 144381223 144381607 -5135430 + RCHARR1 DNA MER1_type 562 974 0 5 1686 23 33 0 0 chr6 144383839 144383869 -5133168 + AT_rich Low_complexity Low_complexity 1 30 0 5 1686 789 88 0 0 chr6 144383944 144384058 -5132979 - B1_Mus1 SINE Alu -5 143 30 5 1686 26 0 0 0 chr6 144384060 144384086 -5132951 + AT_rich Low_complexity Low_complexity 1 26 0 5 1686 500 295 100 44 chr6 144384195 144384674 -5132363 + L1M4 LINE L1 4179 4684 -1462 5 1686 33326 19 1 4 chr6 144384677 144389891 -5127146 + L1Md_T LINE L1 406 5586 -297 5 1686 8681 30 0 0 chr6 144389891 144390887 -5126150 + L1Md_T LINE L1 5587 6582 0 5 1686 207 88 0 0 chr6 144390913 144390947 -5126090 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1686 1201 55 0 0 chr6 144391130 144391276 -5125761 + B1_Mus2 SINE Alu 2 147 0 5 1686 448 285 98 6 chr6 144392312 144392485 -5124552 - B3A SINE B2 -8 190 2 5 1686 417 39 0 0 chr6 144393422 144393473 -5123564 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1686 234 0 0 0 chr6 144393737 144393763 -5123274 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 5 1686 180 0 0 0 chr6 144394418 144394438 -5122599 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 1686 21 36 0 0 chr6 144395022 144395050 -5121987 + AT_rich Low_complexity Low_complexity 1 28 0 5 1686 389 20 20 0 chr6 144395125 144395175 -5121862 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1686 408 40 0 0 chr6 144395175 144395224 -5121813 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1686 2974 58 3 8 chr6 144395422 144395806 -5121231 - L1Md_F2 LINE L1 0 6582 6201 5 1686 327 146 0 0 chr6 144397272 144397327 -5119710 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 5 1686 259 349 12 18 chr6 144397421 144397590 -5119447 - L1MC LINE L1 -2023 5859 5692 5 1686 773 168 6 0 chr6 144398102 144398281 -5118756 + (TATG)n Simple_repeat Simple_repeat 1 180 0 5 1686 300 320 0 10 chr6 144398282 144398383 -5118654 + (TGGA)n Simple_repeat Simple_repeat 4 103 0 5 1686 195 220 0 0 chr6 144398402 144398452 -5118585 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 5 1686 300 53 0 0 chr6 144398523 144398561 -5118476 + (ATG)n Simple_repeat Simple_repeat 1 38 0 5 1686 325 271 76 8 chr6 144399396 144399515 -5117522 - B1F SINE Alu -1 148 22 5 1686 490 264 16 8 chr6 144399410 144399536 -5117501 - ID_B1 SINE B4 -17 207 81 5 1686 55 56 0 0 chr6 144399554 144399644 -5117393 + AT_rich Low_complexity Low_complexity 1 90 0 5 1686 303 147 39 19 chr6 144399735 144399839 -5117198 + (CA)n Simple_repeat Simple_repeat 2 107 0 5 1686 766 118 47 0 chr6 144399851 144400021 -5117016 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1686 724 302 57 25 chr6 144400209 144400491 -5116546 + B4A SINE B4 2 292 0 5 1686 205 197 16 16 chr6 144400680 144400742 -5116295 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1686 273 57 0 0 chr6 144401474 144401509 -5115528 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1686 510 301 59 0 chr6 144403578 144403781 -5113256 + ID_B1 SINE B4 2 216 -8 5 1686 734 270 73 25 chr6 144403900 144404174 -5112863 + B4A SINE B4 2 288 -4 5 1686 405 0 0 0 chr6 144404548 144404593 -5112444 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1686 270 274 60 0 chr6 144404628 144404712 -5112325 - B4A SINE B4 -202 90 2 5 1686 549 277 28 14 chr6 144406550 144406693 -5110344 + RSINE1 SINE B4 3 147 -18 5 1686 381 75 0 0 chr6 144406694 144406747 -5110290 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1686 615 260 6 43 chr6 144407600 144407761 -5109276 + RSINE1 SINE B4 3 157 -8 5 1686 230 95 24 0 chr6 144407770 144407812 -5109225 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1686 270 238 180 47 chr6 144407883 144408033 -5109004 + Lx8 LINE L1 7302 7471 -2 5 1686 439 316 9 121 chr6 144408446 144408669 -5108368 + B4A SINE B4 1 198 -94 5 1686 385 245 7 7 chr6 144408669 144408809 -5108228 + (CA)n Simple_repeat Simple_repeat 1 140 0 5 1686 621 239 0 0 chr6 144408839 144409019 -5108018 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1686 198 0 0 0 chr6 144410051 144410073 -5106964 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1686 451 336 0 29 chr6 144410802 144410940 -5106097 - RSINE1 SINE B4 -28 137 4 5 1686 206 206 0 16 chr6 144411660 144411724 -5105313 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 5 1686 278 50 0 24 chr6 144414073 144414114 -5102923 + (GGA)n Simple_repeat Simple_repeat 1 40 0 5 1686 1250 48 0 0 chr6 144416228 144416375 -5100662 + B1_Mus2 SINE Alu 1 147 0 5 1686 239 137 0 38 chr6 144416375 144416428 -5100609 + A-rich Low_complexity Low_complexity 6 56 0 5 1686 180 261 0 0 chr6 144416458 144416523 -5100514 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1686 426 284 0 0 chr6 144416564 144416740 -5100297 + (CA)n Simple_repeat Simple_repeat 2 177 0 5 1686 1237 264 124 11 chr6 144416795 144417231 -5099806 + Lx8 LINE L1 6989 7473 0 5 1686 282 329 103 23 chr6 144419877 144420051 -5096986 - RMER30 DNA MER1_type 0 202 15 5 1686 228 250 0 0 chr6 144420757 144420805 -5096232 + tRNA-Ala-GCY_ tRNA tRNA 17 64 -11 5 1686 231 278 58 67 chr6 144420804 144420820 -5096217 + B1F1 SINE Alu 7 109 -40 5 1686 289 253 34 57 chr6 144420820 144420908 -5096129 + ID_B1 SINE B4 102 187 -37 5 1686 24 32 0 0 chr6 144420994 144421025 -5096012 + GC_rich Low_complexity Low_complexity 1 31 0 5 1686 198 0 0 0 chr6 144421357 144421379 -5095658 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 5 1686 503 195 11 6 chr6 144421427 144421546 -5095491 - B1_Mur1 SINE Alu -21 128 7 5 1686 504 0 0 0 chr6 144421609 144421665 -5095372 + (GGA)n Simple_repeat Simple_repeat 3 58 0 5 1686 1033 213 24 5 chr6 144422964 144423176 -5093861 - B3 SINE B2 0 216 1 5 1686 306 0 0 0 chr6 144423896 144423930 -5093107 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1686 745 310 7 47 chr6 144424056 144424357 -5092680 + B4A SINE B4 2 290 -2 5 1686 1531 33 38 0 chr6 144424507 144424691 -5092346 + B2_Mm1t SINE B2 1 191 -2 5 1686 342 115 0 0 chr6 144424780 144424841 -5092196 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1686 1019 206 20 5 chr6 144425096 144425296 -5091741 + B3 SINE B2 3 205 -11 5 1686 297 75 0 0 chr6 144425655 144425695 -5091342 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1686 195 129 0 0 chr6 144425874 144425905 -5091132 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1686 504 293 35 7 chr6 144426454 144426595 -5090442 + RSINE1 SINE B4 18 162 -3 5 1686 180 0 0 0 chr6 144426597 144426617 -5090420 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1686 223 287 30 60 chr6 144427245 144427345 -5089692 + MIR SINE MIR 102 198 -64 6 1686 533 268 43 0 chr6 144427572 144427710 -5089327 - B1F1 SINE Alu 0 149 6 6 1686 270 252 56 83 chr6 144427634 144427742 -5089295 - MT2B2 LTR ERVL -348 236 132 6 1686 298 284 173 6 chr6 144428498 144428654 -5088383 - AmnSINE1 SINE SINE -176 399 218 6 1686 588 146 0 0 chr6 144429509 144429612 -5087425 + (TAGGG)n Simple_repeat Simple_repeat 2 104 0 6 1686 253 156 0 22 chr6 144429613 144429659 -5087378 + GA-rich Low_complexity Low_complexity 2 46 0 6 1686 445 246 72 120 chr6 144430434 144430642 -5086395 - B3A SINE B2 0 198 1 6 1686 1203 107 0 0 chr6 144430689 144430867 -5086170 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 6 1686 423 0 0 0 chr6 144430869 144430916 -5086121 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 6 1686 558 300 0 0 chr6 144430935 144431075 -5085962 - ID_B1 SINE B4 -7 217 78 6 1686 367 234 102 74 chr6 144431665 144431885 -5085152 - MIR SINE MIR -3 259 43 6 1686 317 239 62 0 chr6 144432024 144432116 -5084921 + B1F2 SINE Alu 3 104 -16 6 1686 214 277 0 30 chr6 144432204 144432271 -5084766 + GA-rich Low_complexity Low_complexity 1 65 0 6 1686 289 298 0 0 chr6 144433775 144433859 -5083178 + PB1D10 SINE Alu 27 110 -7 6 1686 740 122 8 0 chr6 144433918 144434041 -5082996 + (GGA)n Simple_repeat Simple_repeat 1 124 0 6 1686 279 250 93 28 chr6 144435141 144435248 -5081789 + RMER15 LTR ERVL 397 510 -65 6 1686 243 0 0 0 chr6 144435384 144435411 -5081626 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1686 638 234 10 1 chr6 144435484 144435643 -5081394 + B3A SINE B2 23 185 -31 6 1686 578 301 19 19 chr6 144436020 144436179 -5080858 - B3A SINE B2 -38 160 2 6 1686 1623 207 31 11 chr6 144436378 144436735 -5080302 - BGLII_B LTR ERVK -77 364 1 6 1686 3243 173 39 9 chr6 144436736 144437382 -5079655 - MYSERV16_I-int LTR ERVK -1 2325 1661 6 1686 521 213 98 0 chr6 144437382 144437504 -5079533 + BGLII_B LTR ERVK 308 441 0 6 1686 480 172 149 0 chr6 144437703 144437837 -5079200 - Lx9 LINE L1 -1 7643 7490 6 1686 1082 156 10 20 chr6 144437834 144438031 -5079006 + Lx9 LINE L1 6809 7003 -641 6 1686 192 40 0 0 chr6 144438689 144438714 -5078323 + (TTG)n Simple_repeat Simple_repeat 2 26 0 6 1686 661 223 23 51 chr6 144439501 144439676 -5077361 + B3 SINE B2 1 170 -46 6 1686 360 0 0 0 chr6 144439676 144439716 -5077321 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1686 366 258 39 123 chr6 144439716 144439743 -5077294 + B2_Mm2 SINE B2 155 186 -9 6 1686 270 0 0 0 chr6 144440292 144440322 -5076715 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1687 257 286 14 0 chr6 144441884 144441954 -5075083 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1687 489 211 91 30 chr6 144442078 144442210 -5074827 - B4 SINE B4 -152 140 1 6 1687 375 192 26 0 chr6 144442539 144442617 -5074420 - PB1 SINE Alu -11 116 37 6 1687 303 315 91 15 chr6 144442851 144442983 -5074054 + B3A SINE B2 3 144 -54 6 1687 236 307 38 30 chr6 144443505 144443636 -5073401 - L1M5 LINE L1 -2361 3785 3654 6 1687 327 263 49 73 chr6 144443989 144444112 -5072925 - B3A SINE B2 -78 120 1 6 1687 240 74 35 53 chr6 144444160 144444217 -5072820 + T-rich Low_complexity Low_complexity 1 56 0 6 1687 1255 34 0 0 chr6 144444217 144444363 -5072674 - B1_Mm SINE Alu -1 146 1 6 1687 386 295 25 0 chr6 144444409 144444531 -5072506 - ID_B1 SINE B4 -12 212 88 6 1687 266 280 76 46 chr6 144445146 144445277 -5071760 - L1M5 LINE L1 -3568 2578 2444 6 1687 3619 97 15 8 chr6 144445624 144446156 -5070881 + Lx2A1 LINE L1 6462 6997 -11 6 1687 201 239 0 0 chr6 144446336 144446382 -5070655 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1687 866 248 6 8 chr6 144446758 144446963 -5070074 + B3A SINE B2 1 209 -7 6 1687 212 162 0 0 chr6 144447142 144447179 -5069858 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1687 384 328 55 39 chr6 144447217 144447471 -5069566 - L1ME4a LINE L1 -235 5889 5632 6 1687 295 238 52 69 chr6 144447546 144447689 -5069348 + MLT1J LTR MaLR 56 235 -277 6 1687 21 0 0 0 chr6 144448601 144448622 -5068415 + AT_rich Low_complexity Low_complexity 1 21 0 6 1687 291 257 0 0 chr6 144448944 144449115 -5067922 + (CA)n Simple_repeat Simple_repeat 1 171 0 6 1687 198 0 0 0 chr6 144449204 144449226 -5067811 + (TCTCTG)n Simple_repeat Simple_repeat 3 24 0 6 1687 195 146 0 0 chr6 144449248 144449289 -5067748 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1687 647 277 75 26 chr6 144449312 144449579 -5067458 - B4 SINE B4 -12 280 1 6 1687 22 0 0 0 chr6 144451934 144451956 -5065081 + AT_rich Low_complexity Low_complexity 1 22 0 6 1687 265 371 14 14 chr6 144452874 144453016 -5064021 + B3 SINE B2 1 142 -74 6 1687 432 0 0 0 chr6 144453023 144453071 -5063966 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1687 261 0 0 0 chr6 144453212 144453241 -5063796 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1687 543 31 0 0 chr6 144453241 144453305 -5063732 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 1687 604 301 76 112 chr6 144454146 144454449 -5062588 + B4 SINE B4 1 292 0 6 1687 2388 153 55 5 chr6 144454654 144454682 -5062355 - MTC LTR MaLR 0 421 394 6 1687 385 34 17 17 chr6 144454682 144454742 -5062295 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 6 1687 2388 153 55 5 chr6 144454742 144455114 -5061923 - MTC LTR MaLR -28 393 3 6 1687 306 0 0 0 chr6 144456458 144456492 -5060545 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1687 261 306 52 12 chr6 144456510 144456682 -5060355 - MER121 Unknown Unknown -181 231 53 6 1687 21 0 0 0 chr6 144456877 144456898 -5060139 + AT_rich Low_complexity Low_complexity 1 21 0 6 1687 986 192 76 25 chr6 144456900 144457098 -5059939 + B3 SINE B2 3 210 -6 6 1687 484 242 197 56 chr6 144457312 144457561 -5059476 - B4 SINE B4 -4 288 5 6 1687 352 241 64 67 chr6 144457986 144458150 -5058887 + B4 SINE B4 119 268 -24 6 1687 523 327 0 0 chr6 144458176 144458463 -5058574 + (CA)n Simple_repeat Simple_repeat 1 287 0 6 1687 216 0 0 0 chr6 144458492 144458516 -5058521 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1687 632 24 12 0 chr6 144459357 144459439 -5057598 + (TG)n Simple_repeat Simple_repeat 1 83 0 6 1687 193 256 16 0 chr6 144459505 144459630 -5057407 + (TG)n Simple_repeat Simple_repeat 1 127 0 6 1687 354 129 0 0 chr6 144459676 144459738 -5057299 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1687 344 298 259 0 chr6 144459739 144459897 -5057140 - B4A SINE B4 -23 269 71 6 1687 1124 65 0 0 chr6 144459943 144460082 -5056955 - B1_Mus1 SINE Alu -9 139 1 6 1687 576 202 0 0 chr6 144460258 144460362 -5056675 - B3 SINE B2 -112 104 1 6 1687 250 278 66 46 chr6 144461636 144461787 -5055250 + LTR40c LTR ERVL 302 455 -10 6 1687 234 0 0 0 chr6 144461962 144461988 -5055049 + (CAA)n Simple_repeat Simple_repeat 1 26 0 6 1687 648 38 0 0 chr6 144462958 144463037 -5054000 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1687 502 247 32 13 chr6 144465172 144465321 -5051716 - MTD LTR MaLR -14 405 257 6 1687 295 121 35 0 chr6 144465710 144465768 -5051269 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 6 1687 246 210 49 0 chr6 144465772 144465853 -5051184 - Lx9 LINE L1 -128 7516 7432 6 1687 752 262 43 120 chr6 144466494 144466819 -5050218 + MTE2a LTR MaLR 1 300 -79 6 1687 304 321 14 39 chr6 144467602 144467851 -5049186 + CT-rich Low_complexity Low_complexity 1 242 0 6 1687 316 222 28 60 chr6 144467866 144468048 -5048989 + CT-rich Low_complexity Low_complexity 5 180 0 6 1687 21 0 0 0 chr6 144468995 144469016 -5048021 + AT_rich Low_complexity Low_complexity 1 21 0 6 1687 251 200 20 0 chr6 144469171 144469221 -5047816 + B1F2 SINE Alu 9 59 -90 6 1687 387 134 0 0 chr6 144469223 144469305 -5047732 + (GA)n Simple_repeat Simple_repeat 1 82 0 6 1687 376 210 55 115 chr6 144469431 144469454 -5047583 - B2_Mm2 SINE B2 -14 181 163 6 1687 222 116 0 0 chr6 144469454 144469497 -5047540 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1687 495 242 50 38 chr6 144469497 144469656 -5047381 - B3 SINE B2 -46 170 10 6 1687 331 231 54 11 chr6 144470766 144470858 -5046179 + B4A SINE B4 1 96 -196 6 1687 476 193 9 0 chr6 144471232 144471346 -5045691 + GA-rich Low_complexity Low_complexity 2 116 0 6 1687 659 292 0 54 chr6 144472777 144472980 -5044057 - B3A SINE B2 -1 197 6 6 1687 251 320 45 60 chr6 144475318 144475451 -5041586 + MLT1A0 LTR MaLR 225 355 -10 6 1687 226 260 29 77 chr6 144475738 144475842 -5041195 + L1MCa LINE L1 1634 1732 -4776 6 1687 259 314 31 39 chr6 144476255 144476384 -5040653 - MLT1F2 LTR MaLR -416 144 17 6 1687 3093 142 51 3 chr6 144476446 144477129 -5039908 - Lx4B LINE L1 -964 6094 5357 6 1687 2418 226 89 5 chr6 144477123 144477674 -5039363 + Lx2B LINE L1 6404 7000 0 6 1687 229 292 0 15 chr6 144478693 144478759 -5038278 + MamGypLTR1d LTR Gypsy 672 736 -77 6 1687 500 335 13 0 chr6 144479207 144479359 -5037678 + ID_B1 SINE B4 2 155 -69 6 1687 411 293 75 8 chr6 144479362 144479496 -5037541 + RSINE1 SINE B4 1 143 -22 6 1687 267 79 0 0 chr6 144479504 144479542 -5037495 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1687 1083 256 21 3 chr6 144479917 144480221 -5036816 + MTD LTR MaLR 1 396 -23 6 1687 186 240 40 0 chr6 144480273 144480323 -5036714 - MIRb SINE MIR -22 246 195 6 1687 350 291 131 17 chr6 144480433 144480608 -5036429 + LTR48 LTR ERV1 1 195 -592 6 1687 477 167 0 0 chr6 144480685 144480769 -5036268 - PB1D7 SINE Alu -19 101 18 6 1687 234 238 27 98 chr6 144480764 144480876 -5036161 + LTR48 LTR ERV1 658 761 -26 6 1687 23 33 0 0 chr6 144481621 144481651 -5035386 + AT_rich Low_complexity Low_complexity 1 30 0 6 1687 629 259 70 20 chr6 144481674 144481875 -5035162 - ID_B1 SINE B4 -12 212 2 7 1687 806 220 53 29 chr6 144482046 144482252 -5034785 + B3 SINE B2 2 212 -4 7 1687 361 324 0 0 chr6 144482977 144483085 -5033952 + (CA)n Simple_repeat Simple_repeat 1 108 0 7 1687 357 211 13 26 chr6 144483088 144483166 -5033871 - B3 SINE B2 -60 156 80 7 1687 379 244 0 109 chr6 144483155 144483293 -5033744 - B3 SINE B2 -92 124 2 7 1687 371 265 52 22 chr6 144483620 144483755 -5033282 - MTEa LTR MaLR -11 368 230 7 1687 251 284 0 61 chr6 144483900 144484080 -5032957 + (CAGTG)n Simple_repeat Simple_repeat 2 170 0 7 1687 554 263 143 45 chr6 144484208 144484431 -5032606 - MTEa LTR MaLR -134 245 1 7 1687 327 184 50 50 chr6 144485461 144485541 -5031496 - B3 SINE B2 0 216 137 7 1687 463 151 69 3 chr6 144485713 144486032 -5031005 + (CA)n Simple_repeat Simple_repeat 1 339 0 7 1687 340 298 53 15 chr6 144487621 144487754 -5029283 + MTEb LTR MaLR 4 141 -218 7 1687 365 284 9 18 chr6 144487825 144487936 -5029101 + MTEb LTR MaLR 207 316 -63 7 1687 244 61 0 0 chr6 144487938 144487971 -5029066 + MT2A LTR ERVL 495 527 -6 7 1687 202 331 92 46 chr6 144488108 144488368 -5028669 + L2b LINE L2 2657 2928 -491 7 1687 205 333 12 37 chr6 144488632 144488713 -5028324 + L2b LINE L2 3296 3374 -1 7 1687 438 53 0 0 chr6 144488966 144489023 -5028014 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1687 339 85 0 0 chr6 144489193 144489240 -5027797 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1687 5129 38 40 5 chr6 144490219 144490848 -5026189 - L1Md_F3 LINE L1 0 6584 5934 7 1687 525 104 0 0 chr6 144490896 144490973 -5026064 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 7 1687 807 249 63 22 chr6 144490992 144491214 -5025823 - B4 SINE B4 -37 255 25 7 1687 189 0 0 0 chr6 144491214 144491235 -5025802 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 7 1687 1044 87 0 0 chr6 144491378 144491527 -5025510 + (TCTCC)n Simple_repeat Simple_repeat 3 151 0 7 1687 369 0 0 0 chr6 144491527 144491567 -5025470 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1687 414 254 0 0 chr6 144492749 144492891 -5024146 + (TG)n Simple_repeat Simple_repeat 2 143 0 7 1687 22 0 0 0 chr6 144493428 144493450 -5023587 + AT_rich Low_complexity Low_complexity 1 22 0 7 1687 405 0 0 0 chr6 144493455 144493500 -5023537 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 7 1687 1139 260 45 12 chr6 144494743 144495078 -5021959 + ORR1E LTR MaLR 11 356 -3 7 1687 645 253 29 0 chr6 144495820 144495990 -5021047 - B3 SINE B2 -41 175 1 7 1687 284 304 35 35 chr6 144496445 144496588 -5020449 + B1F SINE Alu 5 147 -2 7 1687 497 16 0 16 chr6 144498010 144498073 -5018964 + (TC)n Simple_repeat Simple_repeat 1 62 0 7 1687 233 89 22 0 chr6 144498285 144498330 -5018707 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 7 1687 309 237 53 0 chr6 144499505 144499581 -5017456 + ID4_ SINE ID 3 82 -1 7 1687 348 193 9 18 chr6 144499589 144499700 -5017337 + GA-rich Low_complexity Low_complexity 2 111 0 7 1687 1189 156 28 0 chr6 144500051 144500269 -5016768 - MTC LTR MaLR -197 224 1 1 1687 235 130 37 0 chr6 144500732 144500786 -5016251 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 2 1687 326 219 0 53 chr6 144500978 144501166 -5015871 + G-rich Low_complexity Low_complexity 1 178 0 3 1687 227 244 0 0 chr6 144501446 144501491 -5015546 + (CTG)n Simple_repeat Simple_repeat 2 46 0 4 1687 1188 214 47 18 chr6 144501493 144501769 -5015268 + MTD LTR MaLR 12 295 -124 5 1687 21 0 0 0 chr6 144503045 144503066 -5013971 + AT_rich Low_complexity Low_complexity 1 21 0 6 1687 276 269 62 41 chr6 144503700 144503797 -5013240 + B1F1 SINE Alu 1 99 -50 7 1687 374 299 87 35 chr6 144503821 144504050 -5012987 - MER2 DNA MER2_type -21 324 84 8 1687 21 0 0 0 chr6 144504639 144504660 -5012377 + AT_rich Low_complexity Low_complexity 1 21 0 9 1687 520 274 49 63 chr6 144504779 144505063 -5011974 - L1MA7 LINE L1 -172 6119 5840 1 1687 23 0 0 0 chr6 144505368 144505391 -5011646 + AT_rich Low_complexity Low_complexity 1 23 0 1 1687 23 0 0 0 chr6 144506530 144506553 -5010484 + AT_rich Low_complexity Low_complexity 1 23 0 1 1687 252 59 0 0 chr6 144507133 144507167 -5009870 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1687 225 94 0 0 chr6 144507295 144507327 -5009710 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1687 3818 132 87 20 chr6 144509351 144510056 -5006981 + RMER6A LTR ERVK 1 752 -4 1 1687 477 0 0 0 chr6 144510273 144510326 -5006711 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1687 606 242 21 41 chr6 144510408 144510602 -5006435 + Lx7 LINE L1 7128 7317 -379 1 1687 544 261 7 0 chr6 144511621 144511759 -5005278 + B3A SINE B2 1 139 -59 1 1687 402 21 0 0 chr6 144511814 144511861 -5005176 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1 1687 441 0 0 0 chr6 144511868 144511917 -5005120 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1687 774 220 73 43 chr6 144511918 144511971 -5005066 + Lx2B LINE L1 6601 6651 -349 2 1687 1851 134 55 10 chr6 144511971 144512279 -5004758 - ORR1A3 LTR MaLR -3 323 2 2 1687 774 220 73 43 chr6 144512279 144512458 -5004579 + Lx2B LINE L1 6652 6840 -160 2 1687 329 173 161 0 chr6 144513605 144513686 -5003351 - L1MA8 LINE L1 -17 6274 6181 2 1687 319 361 142 15 chr6 144513783 144513980 -5003057 - B4A SINE B4 -6 286 65 2 1687 221 0 0 33 chr6 144514935 144514965 -5002072 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 2 1687 330 221 53 69 chr6 144515400 144515583 -5001454 + RLTR6-int LTR ERV1 1302 1434 -6344 2 1687 297 157 91 91 chr6 144515684 144515761 -5001276 + RLTR6-int LTR ERV1 5223 5299 -18 2 1687 233 278 83 83 chr6 144515992 144516137 -5000900 + RLTR14 LTR ERV1 224 368 -14 2 1687 1113 230 144 6 chr6 144516184 144516503 -5000534 + ORR1D2 LTR MaLR 1 363 -7 2 1687 301 152 0 0 chr6 144516504 144516550 -5000487 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1687 483 242 0 17 chr6 144516550 144516731 -5000306 + (TATG)n Simple_repeat Simple_repeat 1 178 0 2 1687 625 252 9 3 chr6 144516696 144517036 -5000001 + (TG)n Simple_repeat Simple_repeat 1 342 0 3 1687 525 295 48 30 chr6 144518417 144518686 -4998351 - L1MB2 LINE L1 -45 6126 5853 3 1687 219 242 48 16 chr6 144518754 144518817 -4998220 + L2b LINE L2 3299 3363 -12 3 1687 273 228 0 151 chr6 144519565 144519751 -4997286 + (CTCCG)n Simple_repeat Simple_repeat 4 161 0 3 1687 2324 58 10 0 chr6 144520313 144520626 -4996411 - MusHAL1 LINE L1 -694 2018 1703 3 1687 5288 82 3 33 chr6 144520626 144521394 -4995643 + L1_Mus3 LINE L1 5887 6631 -7 3 1687 675 104 0 0 chr6 144521445 144521551 -4995486 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 1687 186 189 0 0 chr6 144521727 144521764 -4995273 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1687 234 423 33 7 chr6 144521951 144522101 -4994936 - MER115 DNA Tip100 -346 347 194 3 1687 486 0 0 0 chr6 144523009 144523063 -4993974 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1687 315 0 0 0 chr6 144523063 144523098 -4993939 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1687 485 167 10 0 chr6 144523573 144523675 -4993362 + CT-rich Low_complexity Low_complexity 3 105 0 4 1687 606 307 12 6 chr6 144524179 144524346 -4992691 - B3A SINE B2 -30 168 1 4 1687 271 320 54 60 chr6 144525067 144525233 -4991804 + MTE2b LTR MaLR 197 361 -18 4 1687 718 291 63 64 chr6 144525325 144525711 -4991326 + MTE2a LTR MaLR 19 403 -16 4 1687 396 272 0 0 chr6 144526801 144526904 -4990133 - L1M2 LINE L1 -523 5774 5672 4 1687 405 0 0 0 chr6 144527651 144527696 -4989341 + (TAA)n Simple_repeat Simple_repeat 1 45 0 4 1687 198 0 0 0 chr6 144529440 144529462 -4987575 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 4 1687 369 0 0 0 chr6 144531239 144531280 -4985757 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1687 477 0 0 0 chr6 144531280 144531333 -4985704 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 4 1687 1104 101 11 6 chr6 144531334 144531513 -4985524 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1687 753 163 0 18 chr6 144531513 144531553 -4985484 + polypurine Low_complexity Low_complexity 3 42 0 5 1687 1114 63 17 22 chr6 144531553 144531732 -4985305 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 5 1687 2720 111 9 43 chr6 144531734 144532157 -4984880 + L1Md_F2 LINE L1 6162 6570 -12 5 1687 753 163 0 18 chr6 144532157 144532282 -4984755 + polypurine Low_complexity Low_complexity 43 165 0 5 1687 378 115 0 0 chr6 144532898 144532959 -4984078 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1687 510 309 36 10 chr6 144534010 144534206 -4982831 - B4A SINE B4 -90 202 2 5 1687 228 315 45 0 chr6 144536264 144536353 -4980684 + L2b LINE L2 3247 3339 -36 5 1687 382 266 127 26 chr6 144536573 144536762 -4980275 - Lx8 LINE L1 0 7473 7266 5 1687 407 262 19 0 chr6 144536778 144536885 -4980152 + MT2A LTR ERVL 26 134 -399 5 1687 530 242 72 129 chr6 144536877 144537197 -4979840 + MT2A LTR ERVL 92 525 -76 5 1687 1144 307 64 25 chr6 144537236 144537643 -4979394 - Lx8 LINE L1 -236 7237 6815 5 1687 285 319 117 12 chr6 144538223 144538385 -4978652 + MER68 LTR ERVL 385 563 0 6 1687 580 260 70 50 chr6 144539236 144539495 -4977542 + MLT1E3 LTR MaLR 354 617 -7 6 1687 327 214 43 0 chr6 144539634 144539704 -4977333 + ID_B1 SINE B4 121 193 -31 6 1687 428 212 40 0 chr6 144539916 144540015 -4977022 + Tigger5 DNA MER2_type 2144 2246 -160 6 1687 6155 106 45 15 chr6 144540204 144541146 -4975891 + Lx3_Mus LINE L1 6024 6993 -16 6 1687 411 21 0 0 chr6 144541543 144541591 -4975446 + (TTA)n Simple_repeat Simple_repeat 2 49 0 6 1687 742 210 177 0 chr6 144541591 144541772 -4975265 - ID_B1 SINE B4 -10 214 2 6 1687 1242 89 0 0 chr6 144542316 144542567 -4974470 + (CA)n Simple_repeat Simple_repeat 1 251 0 6 1687 292 312 34 34 chr6 144542872 144543018 -4974019 - MIRb SINE MIR -37 231 86 6 1687 353 295 113 27 chr6 144543275 144543425 -4973612 - B4A SINE B4 0 292 130 6 1687 492 184 108 31 chr6 144546663 144546792 -4970245 - B4A SINE B4 -152 140 2 7 1687 372 119 0 0 chr6 144547967 144548026 -4969011 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 1687 287 259 24 0 chr6 144548090 144548256 -4968781 + (TG)n Simple_repeat Simple_repeat 2 171 0 7 1687 361 288 139 78 chr6 144548259 144548504 -4968533 - B4 SINE B4 0 292 33 7 1687 328 219 60 13 chr6 144548757 144548864 -4968173 - B1F SINE Alu 0 120 8 7 1687 545 290 39 0 chr6 144549036 144549191 -4967846 + RSINE1 SINE B4 3 163 -2 7 1687 482 218 30 0 chr6 144549748 144550048 -4966989 + (CCA)n Simple_repeat Simple_repeat 1 309 0 7 1687 550 269 14 7 chr6 144550156 144550302 -4966735 + B1_Mur1 SINE Alu 2 148 -1 7 1687 338 0 0 23 chr6 144550617 144550660 -4966377 + (TTA)n Simple_repeat Simple_repeat 2 43 0 7 1687 210 37 0 0 chr6 144550728 144550755 -4966282 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1687 305 247 0 73 chr6 144550776 144550872 -4966165 - RMER21B LTR ERV1 -112 835 747 8 1687 486 216 119 0 chr6 144550943 144551077 -4965960 - RMER21B LTR ERV1 -393 449 300 8 1687 2514 179 67 8 chr6 144551459 144551993 -4965044 - RMER15 LTR ERVL -9 566 1 8 1687 299 300 11 11 chr6 144552377 144552468 -4964569 + ID_B1 SINE B4 82 172 -52 8 1687 333 99 58 19 chr6 144552484 144552587 -4964450 + A-rich Low_complexity Low_complexity 4 110 0 8 1687 384 22 0 0 chr6 144552604 144552649 -4964388 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1687 620 311 160 14 chr6 144553108 144553401 -4963636 + ORR1E LTR MaLR 5 340 -19 8 1687 778 210 103 1 chr6 144553708 144553889 -4963148 + B3A SINE B2 2 203 -13 8 1687 186 43 0 0 chr6 144554011 144554034 -4963003 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 8 1687 192 77 0 0 chr6 144554122 144554148 -4962889 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1687 643 179 6 6 chr6 144554846 144555026 -4962011 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1687 232 365 26 9 chr6 144555316 144555432 -4961605 + L2a LINE L2 3303 3420 -6 9 1687 263 155 121 0 chr6 144556269 144556327 -4960710 + PB1D7 SINE Alu 19 83 -37 9 1687 513 0 0 0 chr6 144556343 144556400 -4960637 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1687 22 0 0 0 chr6 144556464 144556486 -4960551 + AT_rich Low_complexity Low_complexity 1 22 0 9 1687 549 260 22 43 chr6 144556706 144556891 -4960146 + B3A SINE B2 2 182 -16 9 1687 312 223 14 7 chr6 144556915 144557055 -4959982 + (CA)n Simple_repeat Simple_repeat 1 141 0 9 1687 299 277 78 10 chr6 144557588 144557690 -4959347 - B1F SINE Alu -7 142 34 9 1687 792 307 24 50 chr6 144558743 144559041 -4957996 + B4 SINE B4 2 291 -1 9 1687 270 138 0 0 chr6 144559069 144559127 -4957910 + (TC)n Simple_repeat Simple_repeat 1 58 0 9 1687 324 48 0 0 chr6 144559127 144559169 -4957868 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1687 798 274 38 5 chr6 144560804 144561013 -4956024 + B3 SINE B2 1 216 0 1 1687 678 166 40 18 chr6 144561101 144561429 -4955608 + CT-rich Low_complexity Low_complexity 1 335 0 1 1687 193 158 53 0 chr6 144561493 144561550 -4955487 + CT-rich Low_complexity Low_complexity 1 60 0 1 1687 449 316 25 15 chr6 144561662 144561861 -4955176 - Arthur1B DNA Tip100 -449 776 576 1 1687 370 344 7 13 chr6 144562346 144562499 -4954538 + ID_B1 SINE B4 71 222 -2 1 1687 328 135 0 0 chr6 144562681 144562733 -4954304 + B1_Mur4 SINE Alu 1 52 -98 1 1687 430 257 43 22 chr6 144563568 144563707 -4953330 + B1F2 SINE Alu 6 147 -2 1 1687 594 0 0 0 chr6 144563746 144563812 -4953225 + (GAAA)n Simple_repeat Simple_repeat 1 66 0 1 1687 607 142 8 8 chr6 144563812 144563933 -4953104 + GA-rich Low_complexity Low_complexity 2 122 0 1 1687 339 89 0 0 chr6 144564128 144564184 -4952853 + (T)n Simple_repeat Simple_repeat 1 56 0 1 1687 1023 155 0 0 chr6 144564184 144564332 -4952705 - B1_Mur3 SINE Alu 0 149 2 1 1687 194 0 0 37 chr6 144565574 144565601 -4951436 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1687 300 178 0 0 chr6 144566198 144566271 -4950766 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1687 228 218 0 0 chr6 144566877 144566932 -4950105 + Lx8 LINE L1 7416 7470 -3 1 1687 481 259 159 10 chr6 144567811 144568006 -4949031 + B4A SINE B4 8 231 -61 1 1687 578 179 215 23 chr6 144568140 144568317 -4948720 + ID_B1 SINE B4 2 212 -12 1 1687 379 52 35 0 chr6 144568317 144568375 -4948662 + (CAA)n Simple_repeat Simple_repeat 3 62 0 1 1687 394 233 0 43 chr6 144568777 144568871 -4948166 - ID_B1 SINE B4 -17 207 118 1 1687 321 229 0 0 chr6 144568926 144568996 -4948041 - B3 SINE B2 -4 212 143 1 1687 189 296 100 22 chr6 144570018 144570108 -4946929 + MIRb SINE MIR 3 99 -169 1 1687 326 330 78 0 chr6 144570243 144570358 -4946679 - RSINE1 SINE B4 -17 148 25 1 1687 525 32 0 0 chr6 144570377 144570440 -4946597 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1 1687 931 158 0 7 chr6 144570564 144570711 -4946326 + B1_Mus2 SINE Alu 1 146 -1 1 1687 227 333 82 15 chr6 144571172 144571306 -4945731 + MLT1C LTR MaLR 322 464 -3 1 1688 2443 188 2 2 chr6 144572842 144573263 -4943774 + MTC LTR MaLR 1 421 0 1 1688 304 184 0 0 chr6 144573673 144573722 -4943315 + polypurine Low_complexity Low_complexity 2 50 0 1 1688 883 169 0 11 chr6 144573722 144573901 -4943136 + GA-rich Low_complexity Low_complexity 3 179 0 1 1688 691 248 60 55 chr6 144574493 144574728 -4942309 + ORR1E LTR MaLR 37 272 -87 1 1688 328 307 53 34 chr6 144575204 144575353 -4941684 - L1MDa LINE L1 -3765 2772 2623 1 1688 522 276 0 27 chr6 144575353 144575502 -4941535 - B1F1 SINE Alu 0 149 5 1 1688 450 225 109 61 chr6 144575502 144575836 -4941201 - L1MDa LINE L1 -3915 2622 2269 1 1688 236 246 43 14 chr6 144576234 144576304 -4940733 - MIR SINE MIR -92 116 45 1 1688 545 14 0 28 chr6 144577669 144577740 -4939297 + (GGGAGA)n Simple_repeat Simple_repeat 3 71 0 1 1688 313 102 0 33 chr6 144577878 144577939 -4939098 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 1 1688 316 268 184 39 chr6 144578491 144578670 -4938367 + B4A SINE B4 22 226 -66 1 1688 485 201 0 32 chr6 144578713 144578898 -4938139 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1688 817 81 15 0 chr6 144580313 144580449 -4936588 + (TC)n Simple_repeat Simple_repeat 2 139 0 1 1688 296 304 39 16 chr6 144581058 144581185 -4935852 + MTEa LTR MaLR 15 144 -215 1 1688 1049 241 0 24 chr6 144581365 144581612 -4935425 - MTEb LTR MaLR -118 261 21 1 1688 596 253 11 125 chr6 144582515 144582691 -4934346 + MTEa LTR MaLR 217 372 -7 1 1688 344 282 132 19 chr6 144582966 144583125 -4933912 + B4 SINE B4 110 286 -6 1 1688 1024 191 29 0 chr6 144583774 144583944 -4933093 + B3 SINE B2 2 173 -43 1 1688 611 37 0 24 chr6 144583944 144584027 -4933010 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 1 1688 1024 191 29 0 chr6 144584027 144584065 -4932972 + B3 SINE B2 174 215 -1 1 1688 369 304 100 32 chr6 144584147 144584548 -4932489 + L1MC5 LINE L1 7104 7531 -430 1 1688 241 204 37 0 chr6 144584839 144584893 -4932144 + GA-rich Low_complexity Low_complexity 2 57 0 1 1688 618 285 143 45 chr6 144584963 144585228 -4931809 - B4A SINE B4 0 292 2 1 1688 213 39 0 0 chr6 144588197 144588223 -4928814 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1688 522 0 0 0 chr6 144588257 144588315 -4928722 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1688 506 243 78 42 chr6 144588912 144589054 -4927983 - B1F SINE Alu -1 148 2 1 1688 245 313 83 8 chr6 144589670 144589802 -4927235 - B1_Mur2 SINE Alu -6 143 2 1 1688 185 304 14 14 chr6 144589855 144589925 -4927112 - MIRb SINE MIR -145 123 54 1 1688 741 281 63 56 chr6 144590444 144590730 -4926307 - B4A SINE B4 -2 290 3 1 1688 193 362 53 11 chr6 144592177 144592272 -4924765 + MIR SINE MIR 24 122 -140 1 1688 1537 269 105 50 chr6 144592966 144593154 -4923883 + Lx8 LINE L1 6727 6916 -557 1 1688 389 20 20 0 chr6 144593154 144593204 -4923833 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1688 1537 269 105 50 chr6 144593204 144593691 -4923346 + Lx8 LINE L1 6917 7439 -34 1 1688 21 0 0 0 chr6 144593710 144593731 -4923306 + AT_rich Low_complexity Low_complexity 1 21 0 1 1688 239 139 13 53 chr6 144594875 144594951 -4922086 + C-rich Low_complexity Low_complexity 4 76 0 1 1688 205 273 0 18 chr6 144594954 144595010 -4922027 + CT-rich Low_complexity Low_complexity 2 56 0 1 1688 686 299 33 33 chr6 144595627 144595900 -4921137 + Tigger7 DNA MER2_type 199 471 -2020 1 1688 338 338 32 19 chr6 144595898 144596052 -4920985 + Tigger7 DNA MER2_type 2323 2478 -13 1 1688 362 316 0 0 chr6 144596194 144596311 -4920726 + (TG)n Simple_repeat Simple_repeat 2 118 0 1 1688 304 277 11 122 chr6 144596312 144596501 -4920536 - B4 SINE B4 0 292 125 1 1688 326 265 111 71 chr6 144597735 144597861 -4919176 + B1_Mur1 SINE Alu 8 138 -11 1 1688 216 333 10 0 chr6 144598056 144598152 -4918885 - L2 LINE L2 -361 3058 2962 1 1688 515 252 17 0 chr6 144598179 144598298 -4918739 + B1F SINE Alu 22 142 -7 1 1688 25 31 0 0 chr6 144598421 144598453 -4918584 + AT_rich Low_complexity Low_complexity 1 32 0 1 1688 243 0 0 0 chr6 144599431 144599458 -4917579 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1688 455 0 18 0 chr6 144600107 144600162 -4916875 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1688 296 270 39 29 chr6 144600642 144600745 -4916292 + PB1D10 SINE Alu 1 104 -13 1 1688 258 32 0 0 chr6 144600745 144600776 -4916261 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1688 461 317 10 71 chr6 144600843 144601005 -4916032 + B4A SINE B4 56 214 -78 1 1688 282 56 0 0 chr6 144601005 144601041 -4915996 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1 1688 461 317 10 71 chr6 144601041 144601075 -4915962 + B4A SINE B4 215 240 -52 1 1688 727 257 27 0 chr6 144601173 144601360 -4915677 + B3 SINE B2 20 211 -5 1 1688 696 303 90 19 chr6 144602288 144602554 -4914483 + B4 SINE B4 2 286 -6 1 1688 261 0 0 0 chr6 144602858 144602887 -4914150 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1688 5618 13 0 0 chr6 144603625 144604253 -4912784 + L1Md_T LINE L1 4959 5586 -297 1 1688 8624 32 0 0 chr6 144604253 144605249 -4911788 + L1Md_T LINE L1 5587 6582 0 1 1688 838 175 11 0 chr6 144606034 144606211 -4910826 + GA-rich Low_complexity Low_complexity 2 180 0 1 1688 23 0 0 0 chr6 144609375 144609398 -4907639 + AT_rich Low_complexity Low_complexity 1 23 0 1 1688 466 304 7 45 chr6 144610734 144610889 -4906148 + B3A SINE B2 2 150 -48 1 1688 867 10 0 0 chr6 144610889 144610989 -4906048 + (CA)n Simple_repeat Simple_repeat 2 101 0 1 1688 295 285 53 0 chr6 144611090 144611196 -4905841 + PB1D7 SINE Alu 1 113 -36 1 1688 224 318 0 16 chr6 144611222 144611286 -4905751 + GA-rich Low_complexity Low_complexity 6 68 0 1 1688 369 0 0 0 chr6 144611517 144611558 -4905479 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1688 423 0 0 0 chr6 144611573 144611620 -4905417 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1688 1100 67 0 0 chr6 144611815 144611950 -4905087 - B1_Mm SINE Alu -10 137 3 1 1688 418 309 21 29 chr6 144611979 144612119 -4904918 - ID_B1 SINE B4 -5 219 81 1 1688 438 20 0 0 chr6 144612575 144612626 -4904411 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1688 243 0 0 0 chr6 144614134 144614161 -4902876 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1688 255 330 43 9 chr6 144614522 144614638 -4902399 - ORR1E LTR MaLR -221 138 19 1 1688 579 264 97 58 chr6 144614836 144615093 -4901944 - MTE2a LTR MaLR 0 379 113 1 1688 872 245 5 0 chr6 144615226 144615422 -4901615 + B3A SINE B2 1 197 -1 1 1688 23 33 0 0 chr6 144615423 144615453 -4901584 + AT_rich Low_complexity Low_complexity 1 30 0 1 1688 477 232 54 0 chr6 144615713 144615825 -4901212 + B4 SINE B4 3 120 -172 1 1688 348 271 0 40 chr6 144618760 144618860 -4898177 + B4 SINE B4 192 287 -5 1 1688 29 0 0 0 chr6 144618928 144618957 -4898080 + AT_rich Low_complexity Low_complexity 1 29 0 1 1688 336 127 0 0 chr6 144619868 144619923 -4897114 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 1 1688 293 279 92 8 chr6 144621348 144621478 -4895559 + B4 SINE B4 1 141 -151 1 1688 311 384 12 12 chr6 144621491 144621652 -4895385 + RSINE1 SINE B4 4 164 -1 1 1688 477 278 41 51 chr6 144621726 144621923 -4895114 + B3A SINE B2 2 196 -2 1 1688 369 238 200 24 chr6 144622046 144622171 -4894866 + B1F SINE Alu 1 147 -2 1 1688 192 179 0 0 chr6 144622180 144622219 -4894818 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1 1688 372 384 21 5 chr6 144623122 144623308 -4893729 + B4A SINE B4 100 288 -4 1 1688 226 277 0 0 chr6 144623349 144623414 -4893623 + ID4_ SINE ID 2 66 -17 1 1688 192 40 0 0 chr6 144623431 144623456 -4893581 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1 1688 206 331 97 59 chr6 144623951 144624137 -4892900 - MIRb SINE MIR -42 226 34 2 1688 394 241 26 35 chr6 144624325 144624441 -4892596 - PB1D7 SINE Alu -1 119 5 2 1688 243 0 0 0 chr6 144625324 144625351 -4891686 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1688 420 71 0 0 chr6 144625435 144625491 -4891546 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 1688 405 0 0 0 chr6 144625747 144625792 -4891245 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1688 288 0 0 0 chr6 144625886 144625918 -4891119 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 2 1688 290 238 1 167 chr6 144630710 144630829 -4886208 - PB1D7 SINE Alu -10 110 9 2 1688 613 283 7 7 chr6 144631079 144631225 -4885812 - B1F SINE Alu -1 148 3 2 1688 369 211 0 0 chr6 144631666 144631737 -4885300 + ID2 SINE ID 2 72 -11 2 1688 715 263 49 78 chr6 144631904 144632313 -4884724 + BGLII_B LTR ERVK 1 406 -35 2 1688 652 258 34 73 chr6 144632352 144632557 -4884480 + ID_B1 SINE B4 9 205 -19 2 1688 2043 32 48 16 chr6 144632558 144632810 -4884227 - L1Md_F2 LINE L1 -2 6580 6321 2 1688 22 0 0 0 chr6 144632816 144632838 -4884199 + AT_rich Low_complexity Low_complexity 1 22 0 2 1688 472 278 21 57 chr6 144633308 144633449 -4883588 - B1F SINE Alu -4 145 10 2 1688 200 59 29 0 chr6 144633663 144633697 -4883340 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 2 1688 894 156 0 0 chr6 144633725 144633898 -4883139 + (TG)n Simple_repeat Simple_repeat 2 174 0 2 1688 758 163 29 6 chr6 144633932 144634105 -4882932 + (TATG)n Simple_repeat Simple_repeat 4 180 0 2 1688 216 143 0 0 chr6 144634098 144634140 -4882897 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1688 334 44 22 0 chr6 144634140 144634185 -4882852 - HAL1-3A_ME LINE L1 -846 2012 1967 2 1688 858 251 28 52 chr6 144634264 144634512 -4882525 - B4 SINE B4 -49 243 2 2 1688 433 187 21 21 chr6 144634666 144634759 -4882278 - B1F1 SINE Alu -20 129 37 2 1688 256 259 71 44 chr6 144635162 144635275 -4881762 + ORR1E LTR MaLR 51 166 -193 2 1688 297 0 0 0 chr6 144635325 144635358 -4881679 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1688 427 265 68 0 chr6 144638282 144638399 -4878638 - RSINE1 SINE B4 -39 126 2 2 1688 273 75 0 0 chr6 144638766 144638806 -4878231 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1688 772 286 46 38 chr6 144639444 144639684 -4877353 + B4A SINE B4 37 278 -14 2 1688 387 0 0 0 chr6 144639704 144639747 -4877290 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1688 556 269 8 0 chr6 144640822 144640956 -4876081 - ID_B1 SINE B4 -3 221 87 2 1688 1412 134 13 22 chr6 144641210 144641438 -4875599 + URR1A DNA MER1_type 1 226 0 2 1688 538 155 19 10 chr6 144642374 144642478 -4874559 + RSINE1 SINE B4 57 161 -4 2 1688 714 286 69 0 chr6 144642898 144643129 -4873908 - Lx8 LINE L1 -958 6515 6269 2 1688 4375 31 33 0 chr6 144643297 144643813 -4873224 + L1Md_F2 LINE L1 6049 6581 -1 2 1688 253 164 68 68 chr6 144644162 144644221 -4872816 + IAPEy-int LTR ERVK 3788 3846 -3667 2 1688 723 224 19 13 chr6 144644740 144644898 -4872139 + B3 SINE B2 1 159 -57 2 1688 645 223 60 102 chr6 144644975 144645190 -4871847 + B3 SINE B2 1 206 -10 2 1688 584 295 96 11 chr6 144646296 144646567 -4870470 + RMER15 LTR ERVL 277 570 -5 2 1688 975 210 47 146 chr6 144647177 144647628 -4869409 - RMER17C LTR ERVK 0 410 5 2 1688 784 261 145 13 chr6 144649073 144649376 -4867661 - MTEb LTR MaLR -31 348 6 2 1688 1341 228 96 44 chr6 144649527 144649912 -4867125 - MTD LTR MaLR -14 405 1 2 1688 1106 83 7 0 chr6 144650113 144650258 -4866779 + B1_Mus1 SINE Alu 2 147 -1 2 1688 447 162 0 0 chr6 144650258 144650338 -4866699 + GA-rich Low_complexity Low_complexity 1 80 0 2 1688 239 0 32 0 chr6 144650336 144650367 -4866670 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 2 1688 243 0 0 0 chr6 144650776 144650803 -4866234 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1688 1020 289 84 33 chr6 144651270 144651663 -4865374 - Lx8 LINE L1 -2 7471 7059 2 1688 452 312 74 31 chr6 144651930 144652188 -4864849 + L1MC3 LINE L1 7430 7698 -87 2 1688 374 238 0 0 chr6 144652369 144652449 -4864588 + Lx8 LINE L1 6571 6650 -823 2 1688 999 285 55 40 chr6 144652441 144652770 -4864267 + Lx8 LINE L1 6815 7148 -325 2 1688 336 276 54 39 chr6 144653177 144653324 -4863713 + B1F SINE Alu 1 149 0 2 1688 352 281 0 0 chr6 144653952 144654034 -4863003 + ID4 SINE ID 2 83 0 2 1688 212 175 25 0 chr6 144654034 144654074 -4862963 + GA-rich Low_complexity Low_complexity 4 44 0 2 1688 324 306 36 36 chr6 144654093 144654205 -4862832 + PB1D10 SINE Alu 6 117 0 2 1688 2633 197 24 9 chr6 144654281 144654930 -4862107 + Lx4B LINE L1 6318 7000 0 2 1688 21 57 0 0 chr6 144656523 144656558 -4860479 + AT_rich Low_complexity Low_complexity 1 35 0 2 1688 216 0 0 0 chr6 144656757 144656781 -4860256 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1688 372 328 62 34 chr6 144657981 144658158 -4858879 + ID_B1 SINE B4 3 184 -40 2 1688 378 0 0 0 chr6 144659185 144659227 -4857810 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1688 206 215 13 0 chr6 144659265 144659344 -4857693 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1688 396 0 0 0 chr6 144659895 144659939 -4857098 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1688 304 284 91 55 chr6 144661373 144661593 -4855444 + L1MC4a LINE L1 6751 6978 -904 2 1688 3773 134 32 20 chr6 144663640 144664240 -4852797 + Lx2 LINE L1 6385 6991 -6 2 1688 3280 43 13 0 chr6 144664663 144665058 -4851979 - MTB LTR MaLR 0 400 1 2 1688 231 276 38 9 chr6 144665885 144665991 -4851046 - Lx9 LINE L1 -16 7628 7520 2 1688 915 99 0 0 chr6 144665994 144666135 -4850902 + (CA)n Simple_repeat Simple_repeat 2 142 0 2 1688 390 260 100 67 chr6 144666310 144666520 -4850517 - MLT1A LTR MaLR -149 225 9 2 1688 425 288 58 7 chr6 144666651 144666805 -4850232 + Lx7 LINE L1 7160 7321 -375 2 1688 444 269 97 39 chr6 144667452 144667607 -4849430 - RSINE1 SINE B4 0 165 2 2 1688 203 105 0 50 chr6 144667831 144667871 -4849166 + GA-rich Low_complexity Low_complexity 3 40 0 2 1688 264 224 0 0 chr6 144668285 144668334 -4848703 + L1MC5 LINE L1 7744 7792 -169 2 1688 276 30 0 0 chr6 144668334 144668367 -4848670 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 1688 1439 25 0 32 chr6 144668365 144668828 -4848209 + (GGAA)n Simple_repeat Simple_repeat 1 448 0 2 1688 592 275 11 5 chr6 144668876 144669066 -4847971 + L1MA4 LINE L1 5696 5886 -414 2 1688 515 248 23 30 chr6 144669066 144669199 -4847838 + B1_Mur4 SINE Alu 19 150 0 2 1688 330 204 0 0 chr6 144669877 144669970 -4847067 + (CGGGG)n Simple_repeat Simple_repeat 5 97 0 2 1688 188 277 98 25 chr6 144670535 144670657 -4846380 + MIR3 SINE MIR 57 187 -21 2 1688 465 330 11 37 chr6 144670912 144671101 -4845936 + B4 SINE B4 37 220 -72 2 1688 254 216 30 20 chr6 144671104 144671203 -4845834 + (TTA)n Simple_repeat Simple_repeat 1 100 0 2 1688 408 329 65 0 chr6 144671215 144671370 -4845667 + RSINE1 SINE B4 1 165 0 2 1688 227 359 0 0 chr6 144671396 144671474 -4845563 + B4 SINE B4 215 292 0 2 1688 243 0 0 0 chr6 144674670 144674697 -4842340 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1688 21 0 0 0 chr6 144674884 144674905 -4842132 + AT_rich Low_complexity Low_complexity 1 21 0 2 1688 662 230 278 41 chr6 144675276 144675600 -4841437 - MTD LTR MaLR -14 405 5 2 1688 467 313 68 20 chr6 144675896 144676239 -4840798 + L1MA5 LINE L1 5634 5992 -311 2 1688 809 296 104 33 chr6 144676751 144677202 -4839835 + Lx8 LINE L1 6847 7329 -144 2 1688 24 0 0 0 chr6 144678126 144678150 -4838887 + AT_rich Low_complexity Low_complexity 1 24 0 2 1688 446 218 19 56 chr6 144678207 144678314 -4838723 - ID_B1 SINE B4 -121 103 1 2 1688 201 306 9 43 chr6 144678555 144678671 -4838366 - L3 LINE CR1 -1973 2516 2405 2 1688 324 0 0 0 chr6 144679188 144679224 -4837813 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1688 195 42 0 0 chr6 144679705 144679729 -4837308 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2 1688 707 241 37 51 chr6 144679868 144680082 -4836955 + ID_B1 SINE B4 8 218 -6 2 1688 180 0 0 0 chr6 144680100 144680120 -4836917 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1688 691 252 39 19 chr6 144680993 144681199 -4835838 - B4A SINE B4 -41 251 42 2 1688 204 254 34 0 chr6 144681203 144681262 -4835775 - L2a LINE L2 -253 3173 3113 2 1688 529 289 114 28 chr6 144681566 144681961 -4835076 + L1MB1 LINE L1 2224 2652 -4197 2 1688 536 275 137 73 chr6 144682299 144682744 -4834293 + L1MB1 LINE L1 2812 3247 -3598 2 1688 266 275 37 12 chr6 144682754 144682835 -4834202 - MLT1A1 LTR MaLR 0 408 326 2 1688 950 301 117 42 chr6 144683105 144684092 -4832945 + L1MB1 LINE L1 3255 4315 -2527 2 1688 618 122 0 0 chr6 144684092 144684190 -4832847 + (GGA)n Simple_repeat Simple_repeat 3 100 0 2 1688 633 308 170 25 chr6 144684190 144684764 -4832273 + L1MB1 LINE L1 4309 4971 -1877 2 1688 455 296 72 32 chr6 144685075 144685302 -4831735 + L1MB1 LINE L1 5166 5391 -1451 2 1688 243 0 0 0 chr6 144685302 144685329 -4831708 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1688 455 296 72 32 chr6 144685329 144685380 -4831657 + L1MB1 LINE L1 5392 5454 -1388 2 1688 452 242 30 12 chr6 144685722 144686062 -4830975 + (TATATG)n Simple_repeat Simple_repeat 1 346 0 2 1688 403 307 99 19 chr6 144686064 144686130 -4830907 + L1MB1 LINE L1 5968 6041 -841 2 1688 625 252 64 10 chr6 144686130 144686334 -4830703 - B3 SINE B2 -1 215 1 2 1688 403 307 99 19 chr6 144686334 144686579 -4830458 + L1MB1 LINE L1 6042 6303 -579 2 1688 400 287 156 50 chr6 144686616 144686898 -4830139 + Lx8 LINE L1 6916 7227 -246 2 1688 258 266 221 7 chr6 144686899 144687039 -4829998 + Lx8 LINE L1 7174 7343 -130 2 1688 1224 41 0 0 chr6 144687095 144687241 -4829796 + B1_Mus2 SINE Alu 2 147 0 2 1688 195 42 0 0 chr6 144687241 144687265 -4829772 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1688 287 230 0 51 chr6 144687283 144687361 -4829676 + Lx8 LINE L1 7398 7471 -2 2 1688 618 308 74 15 chr6 144687440 144687779 -4829258 + L1MB1 LINE L1 6418 6776 -94 2 1688 1680 179 15 18 chr6 144687798 144688139 -4828898 - MTD LTR MaLR -15 404 65 3 1688 435 298 30 0 chr6 144688198 144688329 -4828708 + ORR1E LTR MaLR 1 135 -224 3 1688 706 254 95 35 chr6 144688605 144688805 -4828232 + ID_B1 SINE B4 5 216 -8 3 1688 746 288 73 59 chr6 144690035 144690375 -4826662 - MTE2a LTR MaLR -15 364 20 3 1688 584 264 25 19 chr6 144693109 144693271 -4823766 + RSINE1 SINE B4 3 165 0 3 1688 23 33 0 0 chr6 144693321 144693351 -4823686 + AT_rich Low_complexity Low_complexity 1 30 0 3 1688 365 297 0 0 chr6 144694199 144694300 -4822737 - PB1D7 SINE Alu -11 109 9 3 1688 251 273 0 38 chr6 144694230 144694310 -4822727 - ID_B1 SINE B4 -68 156 80 3 1688 219 170 37 19 chr6 144694552 144694606 -4822431 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1688 350 275 46 0 chr6 144694756 144694865 -4822172 - PB1D9 SINE Alu -1 119 6 3 1688 1137 191 59 33 chr6 144695697 144695968 -4821069 - MTD LTR MaLR -3 416 139 3 1688 234 0 0 0 chr6 144696013 144696039 -4820998 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1688 443 289 16 16 chr6 144696045 144696168 -4820869 - RSINE1 SINE B4 -13 152 30 3 1688 2414 92 55 11 chr6 144696204 144696565 -4820472 - Lx2 LINE L1 0 6997 6621 3 1688 204 97 0 0 chr6 144696941 144696972 -4820065 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 3 1688 210 71 0 0 chr6 144697828 144697856 -4819181 + (TAA)n Simple_repeat Simple_repeat 3 30 0 3 1688 300 111 0 0 chr6 144698336 144698381 -4818656 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1688 394 245 20 20 chr6 144698488 144698588 -4818449 + B1F SINE Alu 28 127 -22 3 1688 641 196 17 6 chr6 144698603 144698786 -4818251 + GA-rich Low_complexity Low_complexity 1 185 0 3 1688 22 56 0 0 chr6 144700520 144700556 -4816481 + AT_rich Low_complexity Low_complexity 1 36 0 3 1688 779 256 0 16 chr6 144700748 144700931 -4816106 + B3A SINE B2 3 182 -16 3 1688 360 0 0 0 chr6 144702829 144702869 -4814168 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 1688 216 0 0 0 chr6 144702869 144702892 -4814145 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1688 423 0 0 0 chr6 144702892 144702938 -4814099 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1689 457 321 52 52 chr6 144703938 144704207 -4812830 - B4A SINE B4 -22 270 2 3 1689 567 147 0 0 chr6 144705271 144705373 -4811664 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 1689 378 0 0 0 chr6 144705474 144705516 -4811521 + (GA)n Simple_repeat Simple_repeat 2 43 0 3 1689 322 108 15 15 chr6 144706771 144706837 -4810200 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1689 1305 88 0 0 chr6 144706837 144707109 -4809928 + (TG)n Simple_repeat Simple_repeat 1 272 0 3 1689 435 130 0 0 chr6 144707245 144707322 -4809715 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1689 22 0 0 0 chr6 144707360 144707382 -4809655 + AT_rich Low_complexity Low_complexity 1 22 0 3 1689 230 291 143 41 chr6 144707406 144707553 -4809484 - Lx8 LINE L1 -37 7436 7275 3 1689 223 49 49 0 chr6 144707718 144707759 -4809278 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 3 1689 218 288 0 0 chr6 144707906 144707965 -4809072 - RSINE1 SINE B4 -16 149 91 3 1689 4580 32 6 6 chr6 144709014 144709553 -4807484 - L1Md_F3 LINE L1 -1 6583 6045 3 1689 28 29 0 0 chr6 144709832 144709867 -4807170 + AT_rich Low_complexity Low_complexity 1 35 0 3 1689 390 129 0 0 chr6 144710243 144710305 -4806732 + (A)n Simple_repeat Simple_repeat 1 62 0 3 1689 813 203 120 95 chr6 144711007 144711212 -4805825 + B4A SINE B4 1 228 -64 3 1689 1124 162 19 39 chr6 144711212 144711417 -4805620 + B3 SINE B2 2 202 -14 3 1689 813 203 120 95 chr6 144711417 144711494 -4805543 + B4A SINE B4 229 290 -2 3 1689 225 0 0 0 chr6 144711670 144711695 -4805342 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1689 528 16 0 0 chr6 144711695 144711755 -4805282 + (GA)n Simple_repeat Simple_repeat 1 61 0 3 1689 398 273 53 240 chr6 144711769 144712015 -4805022 + ID_B1 SINE B4 2 201 -23 3 1689 215 350 59 20 chr6 144711926 144712028 -4805009 + B1F SINE Alu 29 134 -15 3 1689 335 245 143 0 chr6 144712277 144712375 -4804662 + PB1D10 SINE Alu 6 117 0 3 1689 230 282 28 0 chr6 144712373 144712444 -4804593 + ID SINE ID 2 74 -150 3 1689 246 342 0 0 chr6 144712445 144712521 -4804516 + GA-rich Low_complexity Low_complexity 3 78 0 3 1689 1127 82 0 0 chr6 144713750 144713897 -4803140 - B1_Mus1 SINE Alu 0 148 2 3 1689 234 81 0 0 chr6 144714182 144714219 -4802818 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 3 1689 583 286 73 62 chr6 144714431 144714651 -4802386 + B4 SINE B4 2 224 -68 3 1689 1069 77 28 3 chr6 144714651 144714825 -4802212 + (TAGA)n Simple_repeat Simple_repeat 1 180 -157 3 1689 1069 77 28 3 chr6 144714830 144714980 -4802057 + (TAGA)n Simple_repeat Simple_repeat 181 337 0 3 1689 583 286 73 62 chr6 144714980 144715025 -4802012 + B4 SINE B4 229 276 -16 3 1689 323 274 10 21 chr6 144715055 144715152 -4801885 + GA-rich Low_complexity Low_complexity 4 99 0 3 1689 1471 184 93 22 chr6 144715269 144715624 -4801413 - MTD LTR MaLR -16 403 24 3 1689 432 0 0 0 chr6 144715639 144715687 -4801350 + (CAGA)n Simple_repeat Simple_repeat 3 50 0 3 1689 570 29 0 0 chr6 144715840 144715908 -4801129 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 3 1689 407 14 0 79 chr6 144719248 144719324 -4797713 + (CCCCCA)n Simple_repeat Simple_repeat 3 72 0 3 1689 234 282 86 37 chr6 144719324 144719405 -4797632 + Tigger7 DNA MER2_type 224 308 -2183 3 1689 637 276 211 3 chr6 144719419 144719703 -4797334 + Tigger7 DNA MER2_type 2143 2485 -6 3 1689 229 222 53 53 chr6 144719796 144719872 -4797165 + ID4 SINE ID 8 83 0 3 1689 214 281 15 30 chr6 144719881 144719947 -4797090 - L2a LINE L2 -12 3414 3350 3 1689 628 254 109 103 chr6 144720619 144720996 -4796041 - MTE2a LTR MaLR 0 379 1 3 1689 776 279 37 0 chr6 144721557 144721772 -4795265 - ID_B1 SINE B4 0 224 2 3 1689 227 54 0 26 chr6 144722031 144722069 -4794968 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1689 1102 72 0 21 chr6 144722069 144722211 -4794826 - B1_Mus1 SINE Alu -9 139 1 3 1689 816 233 157 0 chr6 144722651 144722887 -4794150 + B4A SINE B4 1 273 -19 3 1689 315 0 0 0 chr6 144722914 144722949 -4794088 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1689 295 287 0 36 chr6 144723456 144723568 -4793469 + C-rich Low_complexity Low_complexity 6 113 0 3 1689 215 324 128 35 chr6 144724279 144724420 -4792617 - MIRb SINE MIR -15 253 100 3 1689 588 327 31 58 chr6 144725242 144725534 -4791503 + B4A SINE B4 5 288 -4 3 1689 202 217 0 0 chr6 144727287 144727333 -4789704 + A-rich Low_complexity Low_complexity 4 49 0 3 1689 191 36 36 0 chr6 144728261 144728289 -4788748 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 3 1689 486 0 0 0 chr6 144728955 144729009 -4788028 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1689 21 0 0 0 chr6 144729671 144729692 -4787345 + GC_rich Low_complexity Low_complexity 1 21 0 3 1689 255 61 0 0 chr6 144729699 144729732 -4787305 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1689 188 186 17 0 chr6 144730438 144730497 -4786540 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1689 578 148 0 24 chr6 144730505 144730630 -4786407 + CT-rich Low_complexity Low_complexity 1 122 0 3 1689 43 35 0 0 chr6 144730773 144730830 -4786207 + GC_rich Low_complexity Low_complexity 1 57 0 3 1689 559 163 279 32 chr6 144732898 144733056 -4783981 + B3A SINE B2 2 198 0 3 1689 223 333 97 0 chr6 144733944 144734016 -4783021 + ID4 SINE ID 3 81 -2 3 1689 21 0 0 0 chr6 144734145 144734166 -4782871 + AT_rich Low_complexity Low_complexity 1 21 0 3 1689 24 32 0 0 chr6 144734250 144734281 -4782756 + AT_rich Low_complexity Low_complexity 1 31 0 3 1689 256 341 51 22 chr6 144734355 144734493 -4782544 + B1F1 SINE Alu 1 142 -7 3 1689 315 0 0 0 chr6 144734494 144734529 -4782508 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 1689 227 190 17 0 chr6 144734700 144734758 -4782279 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 3 1689 200 241 17 17 chr6 144734777 144734836 -4782201 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 3 1689 248 202 118 43 chr6 144735143 144735236 -4781801 - MLT1A1 LTR MaLR -12 396 297 3 1689 363 301 87 0 chr6 144736122 144736225 -4780812 + B1F SINE Alu 20 131 -18 3 1689 426 276 96 7 chr6 144736388 144736523 -4780514 + B1F SINE Alu 3 149 0 3 1689 243 88 0 0 chr6 144737127 144737161 -4779876 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 3 1689 442 244 255 4 chr6 144737250 144737493 -4779544 + Lx8 LINE L1 7010 7313 -160 3 1689 231 167 0 0 chr6 144737685 144737727 -4779310 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1689 296 282 12 12 chr6 144737752 144737838 -4779199 - RSINE1 SINE B4 -77 88 3 3 1689 252 169 150 17 chr6 144738169 144738229 -4778808 - ID4_ SINE ID -2 81 14 3 1689 991 64 14 0 chr6 144738236 144738376 -4778661 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 3 1689 297 299 134 0 chr6 144738385 144738482 -4778555 - B1_Mus2 SINE Alu -37 110 1 3 1689 258 32 0 0 chr6 144738514 144738545 -4778492 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1689 675 54 0 0 chr6 144740686 144740778 -4776259 + (CA)n Simple_repeat Simple_repeat 2 93 0 3 1689 470 271 132 7 chr6 144740779 144740931 -4776106 + ID_B1 SINE B4 52 222 -2 3 1689 222 128 0 0 chr6 144741319 144741358 -4775679 + (CTCG)n Simple_repeat Simple_repeat 2 40 0 3 1689 477 110 0 0 chr6 144741361 144741434 -4775603 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1689 216 0 0 0 chr6 144742171 144742195 -4774842 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1689 504 274 31 72 chr6 144742571 144742764 -4774273 + B3A SINE B2 4 188 -10 3 1689 214 246 40 40 chr6 144742830 144742906 -4774131 - MIR SINE MIR -112 150 75 3 1689 519 249 70 65 chr6 144742991 144743176 -4773861 + B3A SINE B2 8 193 -5 4 1689 1889 150 28 0 chr6 144743690 144744010 -4773027 - ORR1A4 LTR MaLR 0 329 1 4 1689 509 246 22 0 chr6 144744848 144745128 -4771909 + (TG)n Simple_repeat Simple_repeat 1 286 0 4 1689 279 0 0 0 chr6 144745132 144745163 -4771874 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1689 1179 285 66 103 chr6 144745303 144746746 -4770291 + L1MC LINE L1 2223 3611 -2535 4 1689 462 264 19 0 chr6 144746748 144746854 -4770183 + B3A SINE B2 10 117 -81 4 1689 234 0 0 0 chr6 144747665 144747691 -4769346 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1689 619 244 0 0 chr6 144747983 144748118 -4768919 + B1_Mur1 SINE Alu 15 149 0 4 1689 874 147 0 17 chr6 144748133 144748306 -4768731 + GA-rich Low_complexity Low_complexity 1 170 0 4 1689 1009 315 62 29 chr6 144748575 144749258 -4767779 + L1M2 LINE L1 2759 3468 -3377 4 1689 360 250 26 80 chr6 144749404 144749517 -4767520 + B1F SINE Alu 2 108 -41 4 1689 563 137 0 8 chr6 144749532 144749657 -4767380 + (GA)n Simple_repeat Simple_repeat 1 124 0 4 1689 234 247 55 0 chr6 144749659 144749732 -4767305 + L1MD LINE L1 3840 3916 -2230 4 1689 375 270 115 57 chr6 144749770 144749892 -4767145 + RSINE1 SINE B4 3 131 -34 4 1689 240 172 0 0 chr6 144749896 144749954 -4767083 + (CAGA)n Simple_repeat Simple_repeat 1 58 0 4 1689 915 10 0 0 chr6 144749959 144750063 -4766974 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 4 1689 3416 258 99 18 chr6 144750133 144751081 -4765956 - RMER1A Other Other -5 1025 1 4 1689 1465 262 31 79 chr6 144751081 144751639 -4765398 - RMER1B Other Other -556 510 23 4 1689 816 233 12 34 chr6 144752656 144752865 -4764172 + B3 SINE B2 3 186 -9 4 1689 433 280 0 0 chr6 144753758 144753890 -4763147 + L1MA4A LINE L1 5749 5880 -423 4 1689 204 321 0 12 chr6 144754001 144754083 -4762954 + GA-rich Low_complexity Low_complexity 2 82 0 4 1689 612 253 13 32 chr6 144754455 144754610 -4762427 - RSINE1 SINE B4 0 165 14 4 1689 416 269 105 20 chr6 144754668 144754820 -4762217 - B3A SINE B2 -33 165 1 4 1689 285 183 0 0 chr6 144756459 144756519 -4760518 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1689 531 285 100 100 chr6 144757120 144757420 -4759617 - MTEa LTR MaLR -79 300 1 4 1689 398 250 99 94 chr6 144757424 144757605 -4759432 + ID_B1 SINE B4 41 222 -2 4 1689 228 188 21 0 chr6 144757610 144757658 -4759379 + A-rich Low_complexity Low_complexity 1 49 0 4 1689 342 241 0 0 chr6 144758112 144758200 -4758837 - ID4 SINE ID -54 98 11 4 1689 213 292 0 0 chr6 144758226 144758298 -4758739 - B1F SINE Alu -8 141 70 4 1689 253 219 18 0 chr6 144758427 144758541 -4758496 + (TG)n Simple_repeat Simple_repeat 2 117 0 4 1689 392 188 14 14 chr6 144758588 144758728 -4758309 + (TG)n Simple_repeat Simple_repeat 1 140 0 4 1689 339 234 18 0 chr6 144758771 144758942 -4758095 + (TG)n Simple_repeat Simple_repeat 2 175 0 4 1689 841 290 119 41 chr6 144759111 144759990 -4757047 - L1MA4A LINE L1 -394 5909 4889 4 1689 1241 71 6 0 chr6 144760052 144760222 -4756815 + B2_Mm2 SINE B2 2 172 -23 4 1689 1764 137 4 0 chr6 144760233 144760511 -4756526 + Lx LINE L1 6372 6650 -4 4 1689 874 276 85 27 chr6 144760534 144760944 -4756093 - L1MA4A LINE L1 -1306 4837 4404 4 1689 940 102 242 0 chr6 144761199 144761217 -4755820 - B2_Mm2 SINE B2 0 195 178 4 1689 369 0 0 0 chr6 144761217 144761258 -4755779 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 4 1689 940 102 242 0 chr6 144761258 144761396 -4755641 - B2_Mm2 SINE B2 -18 177 2 4 1689 231 36 0 0 chr6 144761483 144761511 -4755526 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1689 339 25 0 0 chr6 144761525 144761565 -4755472 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1689 351 0 0 0 chr6 144763862 144763901 -4753136 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1689 402 21 0 0 chr6 144764126 144764173 -4752864 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1689 423 0 0 0 chr6 144764692 144764739 -4752298 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1689 360 0 0 0 chr6 144764739 144764778 -4752259 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1689 491 74 12 0 chr6 144764780 144764861 -4752176 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 4 1689 322 315 72 0 chr6 144764871 144764982 -4752055 + B1F SINE Alu 24 142 -7 4 1689 201 154 0 0 chr6 144764982 144765021 -4752016 + (CAACC)n Simple_repeat Simple_repeat 4 42 0 4 1689 984 119 0 17 chr6 144765471 144765651 -4751386 + (GGTTG)n Simple_repeat Simple_repeat 2 178 0 4 1689 431 238 11 20 chr6 144765679 144765795 -4751242 - B1F2 SINE Alu -11 109 1 4 1689 409 333 56 7 chr6 144767014 144767156 -4749881 + B4A SINE B4 142 290 -2 4 1689 231 328 0 0 chr6 144767163 144767221 -4749816 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1689 242 320 0 29 chr6 144767237 144767340 -4749697 + ID2 SINE ID 4 103 -49 4 1689 307 242 63 105 chr6 144767962 144768105 -4748932 + MT2B LTR ERVL 122 258 -326 4 1689 731 212 0 0 chr6 144768012 144768149 -4748888 + B1_Mur2 SINE Alu 13 149 0 4 1689 423 0 0 0 chr6 144768149 144768196 -4748841 + (GAAAA)n Simple_repeat Simple_repeat 1 47 0 4 1689 847 163 0 22 chr6 144768196 144768378 -4748659 + GA-rich Low_complexity Low_complexity 3 180 0 4 1689 1120 106 6 6 chr6 144768403 144768583 -4748454 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1689 749 216 7 26 chr6 144768727 144768879 -4748158 + B1F1 SINE Alu 1 149 0 4 1689 1131 99 0 0 chr6 144770473 144770787 -4746250 + (GA)n Simple_repeat Simple_repeat 1 314 0 4 1689 210 143 0 0 chr6 144770856 144770891 -4746146 + (TGG)n Simple_repeat Simple_repeat 1 35 0 4 1689 267 327 57 9 chr6 144771780 144771885 -4745152 - MIR3 SINE MIR -41 167 58 4 1689 546 284 71 33 chr6 144772053 144772264 -4744773 - B4A SINE B4 -73 219 1 4 1689 225 159 0 0 chr6 144772909 144772953 -4744084 + C-rich Low_complexity Low_complexity 4 47 0 4 1689 216 0 0 0 chr6 144772986 144773010 -4744027 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 4 1689 273 292 33 67 chr6 144773602 144773653 -4743384 - B2_Mm1t SINE B2 -19 174 1 4 1689 540 279 23 0 chr6 144773653 144773782 -4743255 - RSINE1 SINE B4 -32 133 2 4 1689 250 289 27 70 chr6 144773809 144773995 -4743042 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 1689 34780 9 1 4 chr6 144774529 144780540 -4736497 + L1Md_A LINE L1 1 5586 -297 4 1689 9117 8 0 0 chr6 144780540 144781536 -4735501 + L1Md_A LINE L1 5587 6582 0 4 1689 333 0 0 0 chr6 144782293 144782330 -4734707 + (TTG)n Simple_repeat Simple_repeat 3 39 0 4 1689 587 159 41 0 chr6 144782473 144782643 -4734394 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 1689 1061 238 59 11 chr6 144782737 144783009 -4734028 + B4A SINE B4 2 286 -6 4 1689 266 0 29 0 chr6 144783916 144783950 -4733087 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 4 1689 684 304 32 32 chr6 144784798 144785046 -4731991 + B4A SINE B4 1 248 -44 4 1689 243 61 0 0 chr6 144785059 144785092 -4731945 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1689 424 173 28 41 chr6 144785122 144785267 -4731770 + (CATA)n Simple_repeat Simple_repeat 4 146 0 4 1689 405 0 0 0 chr6 144785775 144785820 -4731217 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1689 423 0 0 0 chr6 144786137 144786184 -4730853 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1689 526 285 29 7 chr6 144786196 144786334 -4730703 - RSINE1 SINE B4 -21 144 4 4 1689 282 311 0 0 chr6 144786361 144786435 -4730602 + PB1D7 SINE Alu 31 104 -16 4 1689 249 159 0 0 chr6 144786449 144786493 -4730544 + GA-rich Low_complexity Low_complexity 3 46 0 4 1689 215 152 22 0 chr6 144786754 144786800 -4730237 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1689 432 0 0 0 chr6 144787312 144787360 -4729677 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1689 270 0 0 0 chr6 144787487 144787517 -4729520 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1689 270 0 0 0 chr6 144787565 144787595 -4729442 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1689 270 0 0 0 chr6 144787697 144787727 -4729310 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1689 250 113 96 0 chr6 144788277 144788392 -4728645 + (TAGA)n Simple_repeat Simple_repeat 4 129 0 4 1689 271 169 66 22 chr6 144788410 144788501 -4728536 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 4 1689 1501 43 29 0 chr6 144788519 144788869 -4728168 + (TAGA)n Simple_repeat Simple_repeat 1 360 0 4 1689 646 233 117 36 chr6 144789045 144789241 -4727796 - B3 SINE B2 0 216 5 4 1689 23 33 0 0 chr6 144789691 144789721 -4727316 + AT_rich Low_complexity Low_complexity 1 30 0 4 1689 1068 154 71 10 chr6 144789721 144789918 -4727119 - B3 SINE B2 -6 210 2 4 1689 518 0 16 0 chr6 144789920 144789982 -4727055 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 4 1689 878 162 25 12 chr6 144790139 144790329 -4726708 + B3 SINE B2 20 212 -4 4 1689 1068 212 57 31 chr6 144793417 144793743 -4723294 - MTD LTR MaLR -39 340 2 4 1689 370 145 90 26 chr6 144794402 144794480 -4722557 - HAL1-3A_ME LINE L1 -800 2058 1976 4 1689 258 244 0 0 chr6 144794480 144794562 -4722475 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 1689 682 287 96 33 chr6 144794563 144794833 -4722204 - B4A SINE B4 -1 291 5 4 1689 202 282 141 0 chr6 144794884 144794969 -4722068 + MER5A DNA MER1_type 35 131 -58 4 1689 198 0 0 0 chr6 144795436 144795458 -4721579 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 4 1689 335 281 0 0 chr6 144795733 144795822 -4721215 - Lx8 LINE L1 -274 7199 7111 4 1689 308 283 65 9 chr6 144796177 144796284 -4720753 - MLT1J LTR MaLR -309 203 91 4 1689 716 227 43 32 chr6 144796863 144797050 -4719987 + B4A SINE B4 5 193 -99 4 1689 647 84 11 0 chr6 144797065 144797160 -4719877 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 1689 27 49 0 0 chr6 144797192 144797233 -4719804 + AT_rich Low_complexity Low_complexity 1 41 0 4 1689 1187 13 20 0 chr6 144797329 144797478 -4719559 - L1Md_F2 LINE L1 0 6582 6431 4 1689 499 244 165 0 chr6 144797634 144797810 -4719227 + ID_B1 SINE B4 14 218 -6 4 1689 568 267 14 80 chr6 144797833 144798045 -4718992 - B3A SINE B2 0 198 1 5 1689 809 209 45 23 chr6 144798917 144799093 -4717944 + B3A SINE B2 3 182 -16 5 1689 822 189 0 0 chr6 144799117 144799297 -4717740 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1689 297 0 0 0 chr6 144799332 144799365 -4717672 + (CATA)n Simple_repeat Simple_repeat 4 36 0 5 1689 291 293 82 51 chr6 144799366 144799392 -4717645 + B4A SINE B4 121 154 -138 5 1689 270 0 0 0 chr6 144799392 144799422 -4717615 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1689 291 293 82 51 chr6 144799422 144799553 -4717484 + B4A SINE B4 155 282 -10 5 1689 1305 111 4 0 chr6 144799574 144799800 -4717237 + (CA)n Simple_repeat Simple_repeat 1 226 0 5 1689 334 308 25 16 chr6 144799955 144800152 -4716885 + L1ME1 LINE L1 5040 5239 -907 5 1689 355 232 139 14 chr6 144800153 144800297 -4716740 + B3A SINE B2 19 180 -18 5 1689 31 44 0 0 chr6 144800316 144800361 -4716676 + AT_rich Low_complexity Low_complexity 1 45 0 5 1689 819 314 85 41 chr6 144800363 144800701 -4716336 + L1ME1 LINE L1 5255 5605 -574 5 1689 599 269 112 0 chr6 144800701 144800861 -4716176 - B3A SINE B2 -18 180 3 5 1689 819 314 85 41 chr6 144800861 144801249 -4715788 + L1ME1 LINE L1 5606 6013 -166 5 1689 609 128 36 18 chr6 144801606 144801717 -4715320 + B1_Mus1 SINE Alu 35 147 -1 5 1689 531 0 0 0 chr6 144801752 144801811 -4715226 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 5 1689 626 266 26 0 chr6 144801854 144802008 -4715029 - B3 SINE B2 -5 211 54 5 1689 259 211 18 0 chr6 144801999 144802056 -4714981 - B3 SINE B2 -105 111 54 5 1689 259 211 18 0 chr6 144802047 144802104 -4714933 - B3 SINE B2 -105 111 54 5 1689 259 211 18 0 chr6 144802095 144802152 -4714885 - B3 SINE B2 -105 111 54 5 1689 259 211 18 0 chr6 144802143 144802200 -4714837 - B3 SINE B2 -105 111 54 5 1689 259 211 18 0 chr6 144802191 144802248 -4714789 - B3 SINE B2 -105 111 54 5 1689 291 175 18 0 chr6 144802239 144802296 -4714741 - B3 SINE B2 -105 111 54 5 1689 293 172 17 0 chr6 144802287 144802345 -4714692 - B3 SINE B2 -105 111 53 5 1689 299 158 18 0 chr6 144802335 144802392 -4714645 - B3 SINE B2 -105 111 54 5 1689 280 175 18 0 chr6 144802383 144802440 -4714597 - B3 SINE B2 -105 111 54 5 1689 555 211 9 0 chr6 144802431 144802540 -4714497 - B3 SINE B2 -105 111 2 5 1689 1372 117 13 55 chr6 144802649 144802884 -4714153 - URR1B DNA MER1_type 0 225 1 5 1689 633 225 0 16 chr6 144803118 144803240 -4713797 + RSINE1 SINE B4 3 122 -43 5 1689 21 0 0 0 chr6 144803399 144803420 -4713617 + AT_rich Low_complexity Low_complexity 1 21 0 5 1689 221 343 0 0 chr6 144804277 144804344 -4712693 + ID4_ SINE ID 11 77 -6 5 1689 519 141 0 0 chr6 144804575 144804667 -4712370 + (TG)n Simple_repeat Simple_repeat 2 93 0 5 1689 1006 273 21 43 chr6 144804707 144804986 -4712051 - B4A SINE B4 0 292 20 5 1689 236 286 14 0 chr6 144805271 144805341 -4711696 - ID4_ SINE ID -1 82 12 5 1689 308 327 115 6 chr6 144805844 144806001 -4711036 + L3 LINE CR1 2081 2254 -2235 5 1689 540 30 0 0 chr6 144806171 144806237 -4710800 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1689 232 284 15 15 chr6 144806251 144806319 -4710718 - ID4 SINE ID -6 77 10 5 1689 285 102 51 0 chr6 144806654 144806713 -4710324 + CT-rich Low_complexity Low_complexity 6 67 0 5 1689 361 303 15 22 chr6 144807310 144807445 -4709592 + L3 LINE CR1 2794 2927 -1562 5 1689 284 184 124 22 chr6 144808984 144809073 -4707964 + MLT1A1 LTR MaLR 309 406 -2 5 1689 241 288 38 0 chr6 144809414 144809494 -4707543 + B2_Mm2 SINE B2 2 84 -111 5 1689 389 256 11 11 chr6 144809492 144809583 -4707454 + B3A SINE B2 39 129 -69 5 1689 279 0 0 0 chr6 144809583 144809614 -4707423 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 1689 315 0 0 0 chr6 144809614 144809648 -4707389 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1689 23 0 0 0 chr6 144809773 144809796 -4707241 + AT_rich Low_complexity Low_complexity 1 23 0 5 1689 1202 264 23 49 chr6 144810203 144810355 -4706682 + Lx8 LINE L1 6456 6610 -863 5 1689 3468 33 2 0 chr6 144810355 144810750 -4706287 + MTA_Mm LTR MaLR 1 396 0 5 1689 1202 264 23 49 chr6 144810750 144810947 -4706090 + Lx8 LINE L1 6611 6796 -677 5 1689 350 299 0 49 chr6 144811438 144811561 -4705476 - PB1D10 SINE Alu 0 117 1 5 1689 304 313 53 26 chr6 144813047 144813198 -4703839 + ID_B1 SINE B4 58 212 -12 5 1689 429 36 0 0 chr6 144813201 144813256 -4703781 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1689 393 262 89 37 chr6 144813561 144813696 -4703341 + B1F SINE Alu 2 143 -6 5 1689 220 250 0 0 chr6 144813815 144813863 -4703174 + G-rich Low_complexity Low_complexity 1 48 0 5 1689 325 291 32 51 chr6 144814249 144814405 -4702632 - RSINE1 SINE B4 -10 155 3 5 1689 180 111 0 0 chr6 144815128 144815155 -4701882 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1689 1287 107 6 17 chr6 144815217 144815398 -4701639 - B2_Mm1t SINE B2 -14 179 1 5 1689 1178 236 43 49 chr6 144815436 144815784 -4701253 + ORR1E LTR MaLR 6 351 -8 5 1689 267 31 0 0 chr6 144816904 144816936 -4700101 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1689 875 246 92 45 chr6 144816955 144817334 -4699703 + RMER5 LTR ERV1 112 508 -26 5 1689 189 312 34 43 chr6 144817454 144817571 -4699466 + MIRb SINE MIR 153 268 0 5 1689 272 321 22 58 chr6 144818373 144818480 -4698557 - B4A SINE B4 -154 138 34 5 1689 1421 196 14 148 chr6 144818480 144818911 -4698126 + ORR1D1 LTR MaLR 2 374 0 5 1689 272 321 22 58 chr6 144818911 144818942 -4698095 - B4A SINE B4 -259 33 5 5 1689 21 36 0 0 chr6 144822625 144822653 -4694384 + AT_rich Low_complexity Low_complexity 1 28 0 5 1689 2759 125 91 9 chr6 144822653 144823105 -4693932 - Lx3B LINE L1 -2 6971 6483 5 1689 207 0 0 0 chr6 144823137 144823160 -4693877 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1689 1176 79 18 0 chr6 144823163 144823328 -4693709 - L1_Mus1 LINE L1 -6 6561 6394 5 1689 447 239 161 7 chr6 144823708 144823851 -4693186 + B3A SINE B2 2 166 -32 5 1689 459 100 0 0 chr6 144823852 144823922 -4693115 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1689 486 268 9 0 chr6 144823992 144824104 -4692933 + ID_B1 SINE B4 106 218 -6 5 1689 1194 69 11 6 chr6 144824111 144824286 -4692751 + (GGGAGA)n Simple_repeat Simple_repeat 1 176 0 5 1689 470 264 62 0 chr6 144826900 144827029 -4690008 - B3A SINE B2 -9 189 53 5 1689 584 250 168 18 chr6 144827557 144827777 -4689260 + Lx9 LINE L1 7206 7458 -186 5 1689 288 0 0 0 chr6 144827779 144827811 -4689226 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1689 314 252 25 34 chr6 144827819 144827938 -4689099 + Lx9 LINE L1 7518 7635 -9 5 1689 986 221 154 13 chr6 144827976 144828288 -4688749 - MTEb LTR MaLR -3 376 21 5 1689 212 174 22 0 chr6 144829175 144829221 -4687816 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 5 1689 612 261 54 13 chr6 144829369 144829549 -4687488 - B3A SINE B2 -34 182 1 5 1689 245 196 0 56 chr6 144829565 144829644 -4687393 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 1689 448 331 49 60 chr6 144829919 144830186 -4686851 - B4A SINE B4 -28 264 1 5 1689 791 74 22 22 chr6 144831060 144831198 -4685839 + (GA)n Simple_repeat Simple_repeat 1 138 0 5 1689 495 253 108 115 chr6 144831199 144831485 -4685552 - B4 SINE B4 -8 284 1 5 1689 364 178 19 0 chr6 144831983 144832090 -4684947 + (CA)n Simple_repeat Simple_repeat 2 110 0 5 1689 582 113 28 0 chr6 144832597 144832703 -4684334 + (TC)n Simple_repeat Simple_repeat 1 109 0 5 1689 683 191 33 3 chr6 144833717 144834054 -4682983 + GA-rich Low_complexity Low_complexity 1 347 0 5 1689 286 224 53 0 chr6 144834074 144834226 -4682811 + GA-rich Low_complexity Low_complexity 1 160 0 5 211 260 278 106 100 chr6 144834409 144834569 -4682468 - RSINE1 SINE B4 0 165 5 5 1690 29 78 0 0 chr6 144834864 144834928 -4682109 + AT_rich Low_complexity Low_complexity 1 64 0 5 1690 343 319 5 38 chr6 144835243 144835455 -4681582 + L1MB7 LINE L1 4963 5167 -979 5 1690 928 209 85 140 chr6 144835456 144835784 -4681253 - MTE2a LTR MaLR -67 312 3 5 1690 347 277 140 13 chr6 144835863 144836013 -4681024 + L1MB7 LINE L1 5870 6038 -146 5 1690 969 93 36 0 chr6 144836021 144836160 -4680877 + B1_Mus1 SINE Alu 5 148 0 5 1690 294 50 0 0 chr6 144836170 144836210 -4680827 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 5 1690 434 313 95 0 chr6 144836291 144836438 -4680599 + RSINE1 SINE B4 3 163 -2 5 1690 477 179 29 15 chr6 144836440 144836576 -4680461 + (CATA)n Simple_repeat Simple_repeat 1 138 0 5 1690 307 154 19 0 chr6 144836578 144836630 -4680407 + HAL1-3A_ME LINE L1 1975 2027 -831 5 1690 23 33 0 0 chr6 144836939 144836969 -4680068 + AT_rich Low_complexity Low_complexity 1 30 0 5 1690 422 267 10 0 chr6 144837206 144837307 -4679730 + B1F2 SINE Alu 37 138 -11 5 1690 297 0 0 0 chr6 144837307 144837340 -4679697 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1690 453 279 134 65 chr6 144837406 144837870 -4679167 + L1MEf LINE L1 1123 1618 -4582 5 1690 591 266 8 8 chr6 144837950 144838079 -4678958 + B3A SINE B2 1 129 -69 5 1690 790 231 147 21 chr6 144838218 144838408 -4678629 - ID_B1 SINE B4 -5 219 6 5 1690 228 327 83 41 chr6 144839111 144839280 -4677757 + L3 LINE CR1 1891 2066 -2423 5 1690 354 23 0 0 chr6 144839684 144839727 -4677310 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1690 589 252 55 110 chr6 144839764 144840000 -4677037 - ID_B1 SINE B4 0 224 2 5 1690 705 318 113 28 chr6 144840211 144840599 -4676438 - Charlie4a DNA MER1_type -67 441 21 5 1690 243 294 106 0 chr6 144840716 144840801 -4676236 + MIR SINE MIR 35 128 -134 5 1690 199 288 6 11 chr6 144840805 144840984 -4676053 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 5 1690 220 346 15 15 chr6 144841002 144841134 -4675903 + (TGGA)n Simple_repeat Simple_repeat 4 135 0 5 1690 212 360 126 31 chr6 144841709 144842090 -4674947 + L2a LINE L2 2106 2522 -897 5 1690 273 240 81 30 chr6 144842468 144842567 -4674470 - ORR1E LTR MaLR -250 109 6 6 1690 317 298 236 27 chr6 144842609 144842947 -4674090 + L2a LINE L2 2765 3173 -253 5 1690 387 60 0 0 chr6 144843326 144843376 -4673661 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1690 585 308 56 42 chr6 144843426 144843714 -4673323 - B4 SINE B4 0 292 1 6 1690 621 328 60 88 chr6 144844344 144844708 -4672329 + ORR1E LTR MaLR 4 357 -2 6 1690 505 333 0 0 chr6 144844789 144844942 -4672095 + RSINE1 SINE B4 3 155 -10 6 1690 212 0 0 35 chr6 144844957 144844986 -4672051 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1690 657 260 0 0 chr6 144845611 144845738 -4671299 - B1_Mur2 SINE Alu -5 144 18 6 1690 298 157 0 0 chr6 144845970 144846021 -4671016 + B3A SINE B2 2 52 -146 6 1690 343 186 0 0 chr6 144847315 144847374 -4669663 + B1F SINE Alu 66 124 -25 6 1690 238 134 24 12 chr6 144847402 144847452 -4669585 + B1F SINE Alu 79 126 -21 6 1690 305 24 24 0 chr6 144847517 144847559 -4669478 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1690 459 0 0 0 chr6 144848218 144848269 -4668768 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1690 477 257 6 130 chr6 144849278 144849365 -4667672 + ID_B1 SINE B4 84 164 -60 6 1690 1195 48 7 0 chr6 144849365 144849511 -4667526 + B1_Mus2 SINE Alu 1 147 0 6 1690 477 257 6 130 chr6 144849511 144849584 -4667453 + ID_B1 SINE B4 165 224 0 6 1690 366 23 0 0 chr6 144850036 144850079 -4666958 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1690 707 271 80 42 chr6 144851704 144852016 -4665021 - ORR1E LTR MaLR -32 327 4 6 1690 280 286 169 17 chr6 144852598 144852776 -4664261 + MLT1D LTR MaLR 84 288 -217 6 1690 229 317 61 0 chr6 144853024 144853106 -4663931 - MTEa LTR MaLR -15 364 278 6 1690 286 254 9 17 chr6 144853209 144853325 -4663712 + GA-rich Low_complexity Low_complexity 3 117 0 6 1690 678 216 43 205 chr6 144853336 144853472 -4663565 - RCHARR1 DNA MER1_type -530 444 320 6 1690 1155 189 29 0 chr6 144853472 144853678 -4663359 + B3 SINE B2 5 216 0 6 1690 678 311 71 76 chr6 144853678 144853981 -4663056 - RCHARR1 DNA MER1_type -614 360 54 6 1690 491 202 0 0 chr6 144854038 144854132 -4662905 + BC1_Mm scRNA scRNA 7 100 -52 6 1690 378 115 0 0 chr6 144854468 144854529 -4662508 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1690 369 274 29 88 chr6 144854691 144854827 -4662210 + MT2B LTR ERVL 149 276 -325 6 1690 697 205 31 8 chr6 144854724 144854852 -4662185 + B1_Mur1 SINE Alu 18 148 -1 6 1690 244 330 25 92 chr6 144855286 144855406 -4661631 - MTEa LTR MaLR -259 120 9 6 1690 281 250 15 0 chr6 144855562 144855630 -4661407 + ID4 SINE ID 3 71 -12 6 1690 369 0 0 0 chr6 144855651 144855692 -4661345 + (GGGGA)n Simple_repeat Simple_repeat 5 45 0 6 1690 923 198 0 39 chr6 144856211 144856416 -4660621 - B3A SINE B2 0 198 2 6 1690 1267 27 0 0 chr6 144856585 144856731 -4660306 + B1_Mm SINE Alu 2 147 0 6 1690 610 250 31 44 chr6 144857777 144857936 -4659101 + B3 SINE B2 47 203 -13 6 1690 30 0 0 0 chr6 144857947 144857977 -4659060 + AT_rich Low_complexity Low_complexity 1 30 0 6 1690 457 306 14 7 chr6 144859639 144859769 -4657268 + RSINE1 SINE B4 27 158 -7 6 1690 668 45 11 0 chr6 144859769 144859857 -4657180 + (TCTCCC)n Simple_repeat Simple_repeat 3 91 0 6 1690 404 248 129 21 chr6 144860127 144860267 -4656770 - B4 SINE B4 -136 156 2 6 1690 219 133 0 0 chr6 144860707 144860752 -4656285 + (G)n Simple_repeat Simple_repeat 1 45 0 6 1690 758 234 47 37 chr6 144860758 144860898 -4656139 + B3A SINE B2 5 148 -50 6 1690 3604 18 2 0 chr6 144860898 144861293 -4655744 + MTA_Mm LTR MaLR 1 396 0 6 1690 758 234 47 37 chr6 144861293 144861343 -4655694 + B3A SINE B2 149 197 -1 6 1690 511 186 114 29 chr6 144861352 144861457 -4655580 - B1_Mur2 SINE Alu -5 144 31 6 1690 219 114 0 0 chr6 144861510 144861545 -4655492 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 6 1690 511 293 0 20 chr6 144861591 144861741 -4655296 - B1F1 SINE Alu -2 147 1 6 1690 227 200 183 0 chr6 144862023 144862083 -4654954 + L1M1 LINE L1 5864 5934 -366 6 1690 417 286 41 8 chr6 144862315 144862544 -4654493 + B4 SINE B4 7 274 -18 6 1690 263 268 165 75 chr6 144862513 144862646 -4654391 - LTR40a LTR ERVL -293 226 82 6 1690 210 143 0 0 chr6 144862658 144862693 -4654344 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1690 292 277 191 0 chr6 144863186 144863280 -4653757 + LTR40a LTR ERVL 408 519 0 6 1690 447 292 32 24 chr6 144863463 144863586 -4653451 + B3A SINE B2 59 182 -16 6 1690 231 352 72 48 chr6 144863589 144863756 -4653281 + Lx8 LINE L1 7204 7374 -99 6 1690 41 36 0 0 chr6 144863758 144863813 -4653224 + AT_rich Low_complexity Low_complexity 1 55 0 6 1690 768 152 38 0 chr6 144864673 144864805 -4652232 + B1_Mus1 SINE Alu 5 141 -7 6 1690 1157 239 41 108 chr6 144864872 144865242 -4651795 + RLTR20B3 LTR ERVK 21 369 -208 6 1690 1276 20 7 0 chr6 144865242 144865389 -4651648 + B1_Mus1 SINE Alu 1 148 0 6 1690 1157 239 41 108 chr6 144865389 144865501 -4651536 + RLTR20B3 LTR ERVK 370 471 -106 6 1690 441 0 0 0 chr6 144865501 144865550 -4651487 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1690 423 0 0 0 chr6 144865624 144865671 -4651366 + (CATA)n Simple_repeat Simple_repeat 4 50 0 6 1690 241 312 113 28 chr6 144866431 144866573 -4650464 + Lx8 LINE L1 6969 7122 -351 6 1690 755 129 8 16 chr6 144866696 144866822 -4650215 - RMER17C LTR ERVK 0 410 286 6 1690 1495 162 86 8 chr6 144866820 144867087 -4649950 + ORR1B2 LTR MaLR 77 364 -3 6 1690 335 135 0 0 chr6 144867209 144867261 -4649776 - HAL1-3A_ME LINE L1 -831 2027 1976 6 1690 405 211 28 22 chr6 144867287 144867466 -4649571 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1690 363 235 36 0 chr6 144867485 144867651 -4649386 + (TG)n Simple_repeat Simple_repeat 1 172 0 6 1690 495 212 13 6 chr6 144867665 144867822 -4649215 + (TG)n Simple_repeat Simple_repeat 1 158 0 6 1690 284 179 60 0 chr6 144867837 144867954 -4649083 + (TG)n Simple_repeat Simple_repeat 1 124 0 6 1690 1116 81 0 0 chr6 144868702 144868911 -4648126 + (TG)n Simple_repeat Simple_repeat 1 209 0 6 1690 638 265 212 25 chr6 144868940 144869176 -4647861 + B4 SINE B4 13 292 0 6 1690 462 240 148 8 chr6 144869539 144869661 -4647376 + B1F SINE Alu 10 148 -1 6 1690 352 340 0 0 chr6 144869701 144869798 -4647239 + (CA)n Simple_repeat Simple_repeat 1 97 0 6 1690 780 286 11 0 chr6 144870010 144870195 -4646842 + ID_B1 SINE B4 33 219 -5 6 1690 589 262 28 0 chr6 144870948 144871093 -4645944 - B1F SINE Alu 0 149 1 6 1690 314 306 109 22 chr6 144871871 144872008 -4645029 - MLT1A1 LTR MaLR 0 408 260 6 1690 239 309 15 0 chr6 144872081 144872149 -4644888 - MLT1A1 LTR MaLR -230 144 76 6 1690 445 206 236 8 chr6 144872486 144872613 -4644424 + B3A SINE B2 4 159 -39 6 1690 863 272 61 50 chr6 144872715 144872994 -4644043 + B4A SINE B4 7 288 -4 6 1690 871 210 58 24 chr6 144873814 144874019 -4643018 - B3 SINE B2 -4 212 1 6 1690 391 304 26 35 chr6 144874195 144874311 -4642726 - B1F SINE Alu -6 143 29 6 1690 412 177 21 10 chr6 144874602 144874699 -4642338 + CT-rich Low_complexity Low_complexity 1 98 0 6 1690 733 192 54 0 chr6 144874718 144874848 -4642189 - B1_Mur1 SINE Alu -12 137 1 6 1690 660 325 28 14 chr6 144874879 144875094 -4641943 + ID_B1 SINE B4 2 219 -5 6 1690 957 156 0 0 chr6 144875294 144875722 -4641315 + (CA)n Simple_repeat Simple_repeat 1 428 0 6 1690 629 301 27 5 chr6 144877282 144877469 -4639568 - B4A SINE B4 -2 290 100 6 1690 978 140 0 0 chr6 144878282 144878461 -4638576 + (TTGG)n Simple_repeat Simple_repeat 1 179 0 6 1690 873 194 0 0 chr6 144878973 144879153 -4637884 + CT-rich Low_complexity Low_complexity 1 180 0 6 1690 2055 131 127 27 chr6 144879622 144879992 -4637045 - MTB_Mm LTR MaLR 0 407 1 6 1690 502 218 119 0 chr6 144880128 144880229 -4636808 + B3 SINE B2 25 137 -79 6 1690 24 32 0 0 chr6 144880234 144880265 -4636772 + AT_rich Low_complexity Low_complexity 1 31 0 6 1690 366 13 76 38 chr6 144880748 144880827 -4636210 + (GTTTG)n Simple_repeat Simple_repeat 2 83 0 6 1690 1020 88 0 0 chr6 144880881 144881018 -4636019 - B1_Mus1 SINE Alu 0 148 12 6 1690 290 167 55 143 chr6 144880939 144881030 -4636007 - 4.5SRNA scRNA scRNA -8 86 4 6 1690 374 213 317 55 chr6 144881042 144881206 -4635831 - B3 SINE B2 -6 210 4 6 1690 462 287 0 0 chr6 144882549 144882650 -4634387 + RSINE1 SINE B4 3 103 -62 6 1690 477 0 0 0 chr6 144882657 144882710 -4634327 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 1690 414 0 0 0 chr6 144882710 144882755 -4634282 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1690 768 269 119 59 chr6 144882827 144883080 -4633957 + B4 SINE B4 19 286 -6 6 1690 620 249 25 0 chr6 144883172 144883313 -4633724 + B1_Mur1 SINE Alu 4 149 0 6 1690 259 310 121 48 chr6 144883446 144883653 -4633384 + L2 LINE L2 2416 2637 -782 6 1690 415 243 201 28 chr6 144883937 144884081 -4632956 - B3A SINE B2 -25 173 5 6 1690 288 0 0 0 chr6 144884416 144884448 -4632589 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1690 269 185 15 0 chr6 144884460 144884525 -4632512 + (TA)n Simple_repeat Simple_repeat 1 66 0 6 1690 387 0 0 0 chr6 144884529 144884572 -4632465 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1690 806 243 6 34 chr6 144884595 144884774 -4632263 + B3A SINE B2 23 196 -2 6 1690 530 224 0 18 chr6 144885179 144885288 -4631749 - ID_B1 SINE B4 -1 223 117 6 1690 481 339 79 1 chr6 144885647 144885850 -4631187 + MLT2D LTR ERVL 5 223 -174 6 1690 815 251 65 87 chr6 144885841 144886116 -4630921 + B4 SINE B4 24 292 0 6 1690 285 325 41 33 chr6 144886150 144886271 -4630766 + MLT2D LTR ERVL 200 321 -93 6 1690 30 0 0 0 chr6 144888061 144888091 -4628946 + AT_rich Low_complexity Low_complexity 1 30 0 6 1690 360 315 11 93 chr6 144889253 144889435 -4627602 - RMER4A LTR ERVK -246 220 54 6 1690 297 136 0 0 chr6 144889663 144889729 -4627308 + (TCC)n Simple_repeat Simple_repeat 2 67 0 6 1690 904 242 19 0 chr6 144889773 144889984 -4627053 + B3 SINE B2 1 215 -1 7 1690 231 114 0 0 chr6 144889984 144890019 -4627018 + (TAG)n Simple_repeat Simple_repeat 1 35 0 7 1690 366 267 155 88 chr6 144890105 144890286 -4626751 - B3A SINE B2 -5 193 1 7 1690 737 201 27 27 chr6 144890592 144890740 -4626297 + B1_Mur4 SINE Alu 3 150 0 7 1690 2055 140 87 45 chr6 144892505 144892863 -4624174 - MTC LTR MaLR -42 379 7 7 1690 866 250 52 24 chr6 144892868 144893081 -4623956 + B4 SINE B4 56 274 -18 7 1690 462 49 0 0 chr6 144893083 144893144 -4623893 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1690 198 47 22 65 chr6 144893443 144893489 -4623548 + (TAAAAA)n Simple_repeat Simple_repeat 4 47 0 7 1690 324 0 0 0 chr6 144895127 144895163 -4621874 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1690 281 242 93 70 chr6 144895331 144895460 -4621577 - RSINE1 SINE B4 0 165 34 7 1690 1033 219 32 5 chr6 144895479 144895699 -4621338 - B4A SINE B4 -66 226 1 7 1690 25 0 0 0 chr6 144896159 144896184 -4620853 + AT_rich Low_complexity Low_complexity 1 25 0 7 1690 863 288 162 14 chr6 144897583 144897935 -4619102 - MT2A LTR ERVL -129 404 1 7 1690 374 296 88 0 chr6 144897937 144898062 -4618975 + B1F1 SINE Alu 14 149 0 7 1690 844 218 15 40 chr6 144898261 144898462 -4618575 + B3A SINE B2 1 196 -2 7 1690 801 252 106 33 chr6 144898879 144899154 -4617883 - RMER15 LTR ERVL 0 575 281 7 1690 604 265 80 50 chr6 144899214 144899413 -4617624 + B3 SINE B2 1 205 -11 7 1690 352 335 60 56 chr6 144899360 144899610 -4617427 - RLTR28B LTR ERVL -38 443 193 7 1690 1190 308 101 96 chr6 144899791 144900008 -4617029 - L1M4c LINE L1 -2268 4111 3915 7 1690 869 169 7 0 chr6 144900008 144900150 -4616887 - B1_Mur4 SINE Alu -6 144 2 7 1690 1190 308 101 96 chr6 144900150 144901359 -4615678 - L1M4c LINE L1 -2465 3914 2678 7 1690 3801 166 59 11 chr6 144901472 144901515 -4615522 - RMER1A Other Other -11 1019 963 7 1690 216 0 0 0 chr6 144901515 144901539 -4615498 + (CAGCT)n Simple_repeat Simple_repeat 2 25 0 7 1690 3801 187 68 25 chr6 144901539 144902418 -4614619 - RMER1A Other Other -68 962 15 7 1690 803 73 8 8 chr6 144902413 144902538 -4614499 - L1_Mus4 LINE L1 -60 6576 6452 7 1690 390 201 0 56 chr6 144902517 144902632 -4614405 - L1M4c LINE L1 -3948 2436 2328 7 1690 243 314 88 8 chr6 144902707 144902832 -4614205 - L1M4c LINE L1 -4612 1772 1638 7 1690 513 309 71 33 chr6 144903348 144903532 -4613505 + ID_B1 SINE B4 1 191 -33 7 1690 292 180 0 62 chr6 144903700 144903765 -4613272 + Lx8 LINE L1 7133 7193 -280 7 1690 270 106 0 0 chr6 144903963 144904010 -4613027 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1690 207 138 16 49 chr6 144904075 144904136 -4612901 + GA-rich Low_complexity Low_complexity 2 60 0 7 1690 360 265 60 70 chr6 144904215 144904414 -4612623 - L1MA8 LINE L1 -41 6250 6054 7 1690 402 301 96 166 chr6 144905189 144905290 -4611747 - MTE2a LTR MaLR -15 364 263 7 1690 1116 75 7 7 chr6 144905290 144905438 -4611599 + B1_Mus1 SINE Alu 1 148 0 7 1690 402 301 96 166 chr6 144905438 144905679 -4611358 - MTE2a LTR MaLR -117 262 46 7 1690 612 292 160 20 chr6 144905748 144906138 -4610899 - L1MA6 LINE L1 -75 6225 5793 7 1690 396 0 0 0 chr6 144906138 144906182 -4610855 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1690 612 292 160 20 chr6 144906182 144906248 -4610789 - L1MA6 LINE L1 -508 5792 5706 7 1690 514 71 126 23 chr6 144906417 144906504 -4610533 - RLTR28B LTR ERVL -259 222 127 7 1690 480 209 0 92 chr6 144906472 144906635 -4610402 - RLTR28B LTR ERVL -65 459 312 7 1690 713 286 38 0 chr6 144907506 144907691 -4609346 + Lx8 LINE L1 6930 7121 -352 7 1690 547 341 35 0 chr6 144907706 144907879 -4609158 + B3A SINE B2 1 179 -19 7 1690 387 0 0 0 chr6 144907901 144907944 -4609093 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 7 1690 1112 93 45 23 chr6 144907944 144908120 -4608917 + B2_Mm2 SINE B2 2 181 -14 7 1690 27 0 0 0 chr6 144908120 144908147 -4608890 + AT_rich Low_complexity Low_complexity 1 27 0 7 1690 490 235 94 14 chr6 144908409 144908547 -4608490 + B1F2 SINE Alu 1 149 0 7 1690 443 189 23 8 chr6 144909231 144909364 -4607673 + CT-rich Low_complexity Low_complexity 2 136 0 7 1690 368 321 26 18 chr6 144909378 144909492 -4607545 - PB1D10 SINE Alu 0 117 3 7 1690 510 218 0 0 chr6 144910832 144910933 -4606104 + B4A SINE B4 174 274 -18 7 1690 484 226 9 19 chr6 144911308 144911416 -4605621 + PB1D7 SINE Alu 13 119 -1 7 1690 515 204 158 73 chr6 144911777 144911941 -4605096 + B3A SINE B2 5 182 -16 7 1690 657 186 101 0 chr6 144912228 144912357 -4604680 + B1_Mur1 SINE Alu 8 149 0 7 1690 295 268 37 102 chr6 144912969 144913077 -4603960 - B3 SINE B2 -20 196 96 7 1690 471 78 0 0 chr6 144913084 144913148 -4603889 + (TA)n Simple_repeat Simple_repeat 2 65 0 7 1690 225 108 0 0 chr6 144913601 144913638 -4603399 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 7 1690 249 33 0 0 chr6 144913728 144913758 -4603279 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1690 1127 211 131 37 chr6 144914421 144914776 -4602261 - MTD LTR MaLR -7 412 6 7 1690 408 241 11 57 chr6 144914790 144914878 -4602159 + RSINE1 SINE B4 82 165 0 7 1690 801 196 0 0 chr6 144914878 144915113 -4601924 + (CATA)n Simple_repeat Simple_repeat 1 235 0 7 1690 905 250 14 19 chr6 144915256 144915464 -4601573 + B3 SINE B2 2 208 -8 7 1690 237 340 53 11 chr6 144916019 144916114 -4600923 + MLT1J1 LTR MaLR 345 443 -1 7 1690 528 244 130 0 chr6 144916512 144916627 -4600410 - RSINE1 SINE B4 -34 131 2 7 1690 208 266 128 40 chr6 144917120 144917221 -4599816 + MIR SINE MIR 52 157 -111 7 1690 663 227 28 0 chr6 144917225 144917366 -4599671 + ID_B1 SINE B4 79 223 -1 7 1690 1093 65 0 0 chr6 144917505 144917644 -4599393 - B1_Mus1 SINE Alu 0 148 10 7 1690 514 204 50 138 chr6 144917511 144917670 -4599367 - B4 SINE B4 -72 220 76 7 1690 294 158 179 26 chr6 144917821 144917899 -4599138 - MLT1A1 LTR MaLR -2 406 317 7 1690 287 187 12 118 chr6 144918344 144918429 -4598608 + B3A SINE B2 4 79 -119 7 1690 629 240 0 11 chr6 144918429 144918610 -4598427 + (CA)n Simple_repeat Simple_repeat 1 179 0 7 1690 22 35 0 0 chr6 144918610 144918639 -4598398 + AT_rich Low_complexity Low_complexity 1 29 0 7 1690 590 215 52 32 chr6 144918670 144918824 -4598213 + RMER5 LTR ERV1 378 534 0 7 1690 247 382 75 25 chr6 144918825 144918986 -4598051 + LTR16B1 LTR ERVL 51 219 -261 7 1690 542 251 39 60 chr6 144919496 144919678 -4597359 + B3A SINE B2 5 182 -16 7 1690 618 256 56 44 chr6 144919728 144919908 -4597129 + B3A SINE B2 1 182 -16 7 1690 27 29 0 0 chr6 144919957 144919991 -4597046 + AT_rich Low_complexity Low_complexity 1 34 0 7 1690 225 333 36 54 chr6 144920377 144920488 -4596549 - LTR33B LTR ERVL -390 113 5 7 1690 585 222 92 6 chr6 144920498 144920646 -4596391 - B3A SINE B2 -57 159 6 7 1690 470 93 12 0 chr6 144920819 144920905 -4596132 + (CAAAA)n Simple_repeat Simple_repeat 4 90 0 7 1690 543 168 126 0 chr6 144922421 144922540 -4594497 - RLTR25B LTR ERVK 0 1028 895 7 1690 3864 159 42 82 chr6 144922533 144923226 -4593811 - RLTR25B LTR ERVK -246 782 125 7 1690 198 0 0 0 chr6 144923226 144923248 -4593789 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 1690 3864 159 42 82 chr6 144923248 144923361 -4593676 - RLTR25B LTR ERVK -904 124 8 7 1690 39145 6 0 0 chr6 144923562 144928917 -4588120 + L1Md_A LINE L1 232 5586 -297 7 1690 9157 5 0 0 chr6 144928917 144929912 -4587125 + L1Md_A LINE L1 5587 6581 -1 7 1690 231 36 0 0 chr6 144930097 144930125 -4586912 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1690 372 223 181 0 chr6 144930518 144930612 -4586425 + ID_B1 SINE B4 62 172 -52 7 1690 3130 65 22 15 chr6 144930831 144931235 -4585802 - MTB_Mm LTR MaLR 0 407 1 7 1690 279 0 0 0 chr6 144931651 144931682 -4585355 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1690 231 36 0 0 chr6 144931682 144931709 -4585328 + (CG)n Simple_repeat Simple_repeat 2 29 0 7 1690 370 273 71 18 chr6 144932420 144932532 -4584505 + B3 SINE B2 99 216 0 7 1690 1035 242 77 28 chr6 144932697 144933050 -4583987 - ORR1D2 LTR MaLR 0 370 1 7 1690 744 0 10 20 chr6 144933064 144933162 -4583875 + (CACAC)n Simple_repeat Simple_repeat 1 97 0 7 1690 999 54 0 0 chr6 144933428 144933558 -4583479 + (TCTCCC)n Simple_repeat Simple_repeat 4 133 0 7 1690 573 188 249 0 chr6 144933615 144933780 -4583257 + B3 SINE B2 4 209 -7 7 1690 1157 220 193 6 chr6 144933979 144934331 -4582706 - MTD LTR MaLR 0 419 2 7 1690 639 292 106 9 chr6 144934572 144934790 -4582247 + B4A SINE B4 44 282 -10 7 1690 465 227 0 3 chr6 144934824 144935113 -4581924 + (CA)n Simple_repeat Simple_repeat 1 287 0 7 1690 884 261 53 18 chr6 144935641 144935922 -4581115 - B4A SINE B4 0 292 2 7 1690 207 0 0 0 chr6 144936224 144936247 -4580790 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 7 1690 2053 140 96 0 chr6 144937005 144937340 -4579697 + ORR1B2 LTR MaLR 1 367 0 7 1690 202 276 67 22 chr6 144937358 144937447 -4579590 - L2c LINE L2 -52 3335 3243 7 1690 637 234 36 42 chr6 144937605 144937770 -4579267 + ID_B1 SINE B4 56 219 -5 7 1690 1030 219 25 5 chr6 144937790 144937992 -4579045 + B3 SINE B2 2 207 -9 7 1690 260 342 19 44 chr6 144938022 144938181 -4578856 - RLTR22_Mur LTR ERVK -388 1460 1306 7 1690 419 87 14 0 chr6 144938181 144938250 -4578787 + (CATA)n Simple_repeat Simple_repeat 1 70 0 7 1690 191 214 0 14 chr6 144938504 144938575 -4578462 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 1690 1599 106 93 0 chr6 144939055 144939292 -4577745 - Lx4A LINE L1 -215 6843 6585 7 1690 451 290 51 56 chr6 144939299 144939496 -4577541 - MTD LTR MaLR -218 201 6 7 1690 478 344 83 26 chr6 144939518 144939784 -4577253 - MLT2C2 LTR ERVL -114 350 70 7 1690 807 243 43 10 chr6 144940167 144940375 -4576662 + B3 SINE B2 1 215 -1 7 1690 370 211 0 26 chr6 144940923 144941001 -4576036 - ID4 SINE ID -1 82 7 8 1690 1075 204 10 0 chr6 144941204 144941400 -4575637 + B3 SINE B2 10 207 -9 8 1690 441 233 51 8 chr6 144941823 144941940 -4575097 - RSINE1 SINE B4 -40 125 4 8 1690 1215 28 14 0 chr6 144941997 144942141 -4574896 - B1_Mm SINE Alu -1 146 1 8 1690 488 263 0 9 chr6 144943060 144943175 -4573862 - B1F SINE Alu -9 140 27 8 1690 614 198 8 33 chr6 144944111 144944231 -4572806 - B1_Mus1 SINE Alu -18 130 14 8 1690 480 175 0 0 chr6 144944423 144944520 -4572517 + GA-rich Low_complexity Low_complexity 3 99 0 8 1690 363 286 30 44 chr6 144944578 144944709 -4572328 + PB1D10 SINE Alu 1 149 0 8 1690 616 259 23 64 chr6 144945944 144946117 -4570920 - B3 SINE B2 -50 166 1 8 1690 249 57 0 0 chr6 144946842 144946877 -4570160 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 8 1690 331 286 0 48 chr6 144947945 144948048 -4568989 - L2c LINE L2 -1 3386 3289 8 1690 401 225 19 104 chr6 144948229 144948383 -4568654 + B1F1 SINE Alu 8 148 -1 8 1690 459 238 92 37 chr6 144948896 144949095 -4567942 + B3 SINE B2 4 193 -2 8 1690 391 245 49 39 chr6 144949096 144949198 -4567839 + PB1D10 SINE Alu 5 107 -10 8 1690 252 0 0 0 chr6 144949855 144949883 -4567154 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1690 317 172 31 15 chr6 144949999 144950064 -4566973 + PB1D9 SINE Alu 54 119 -1 8 1690 198 0 0 0 chr6 144950913 144950935 -4566102 + (G)n Simple_repeat Simple_repeat 1 22 0 8 1690 318 177 48 0 chr6 144950955 144951017 -4566020 - ID_B1 SINE B4 -65 159 95 8 1690 236 387 24 0 chr6 144951130 144951162 -4565875 + RMER12 LTR ERVK 737 768 -554 8 1690 333 0 0 0 chr6 144951162 144951199 -4565838 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1690 236 387 24 0 chr6 144951199 144951290 -4565747 + RMER12 LTR ERVK 769 862 -460 8 1690 303 314 120 36 chr6 144951290 144951482 -4565555 - B4A SINE B4 -57 235 28 8 1690 579 171 34 17 chr6 144951538 144951657 -4565380 - B1_Mur1 SINE Alu -19 130 10 8 1690 621 261 102 5 chr6 144951752 144951948 -4565089 - ID_B1 SINE B4 -7 217 3 8 1690 401 304 77 55 chr6 144951979 144952160 -4564877 + L1ME4a LINE L1 5873 6057 -67 8 1690 205 302 0 0 chr6 144952368 144952431 -4564606 + C-rich Low_complexity Low_complexity 6 68 0 8 1690 709 238 70 55 chr6 144952626 144952826 -4564211 - B3 SINE B2 -4 212 10 8 1690 213 244 11 114 chr6 144952749 144952837 -4564200 - B4A SINE B4 -210 82 4 8 1690 2046 51 4 4 chr6 144953283 144953540 -4563497 - L1_Mus2 LINE L1 0 6566 6310 8 1690 1356 51 11 17 chr6 144953650 144953829 -4563208 + B2_Mm1t SINE B2 2 179 -14 8 1690 253 111 416 37 chr6 144953861 144953969 -4563068 + B2_Mm2 SINE B2 47 195 0 8 1690 207 0 0 0 chr6 144954615 144954638 -4562399 + (TCC)n Simple_repeat Simple_repeat 1 23 0 8 1690 258 107 0 51 chr6 144954762 144954821 -4562216 + (TAA)n Simple_repeat Simple_repeat 3 58 0 8 1690 189 0 0 0 chr6 144954993 144955014 -4562023 + (TA)n Simple_repeat Simple_repeat 2 22 0 8 1690 984 153 180 0 chr6 144955112 144955295 -4561742 + B3 SINE B2 1 216 0 8 1690 1503 68 0 5 chr6 144955378 144955571 -4561466 + B2_Mm2 SINE B2 1 192 -3 8 1690 243 0 0 0 chr6 144955910 144955937 -4561100 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1690 484 262 32 16 chr6 144955966 144956090 -4560947 - RSINE1 SINE B4 -39 126 1 8 1690 471 167 0 0 chr6 144956290 144956380 -4560657 + GA-rich Low_complexity Low_complexity 3 92 0 8 1690 194 318 15 0 chr6 144956819 144956885 -4560152 - MIR SINE MIR -59 149 83 8 1690 825 168 0 0 chr6 144958272 144958451 -4558586 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1690 246 227 0 0 chr6 144958464 144958539 -4558498 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 1690 462 268 58 19 chr6 144958749 144958905 -4558132 + B3A SINE B2 7 168 -30 8 1690 243 0 0 0 chr6 144958910 144958937 -4558100 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1690 348 24 0 0 chr6 144958937 144958977 -4558060 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 1690 344 190 86 25 chr6 144959008 144959089 -4557948 + RSINE1 SINE B4 12 97 -68 8 1690 189 0 0 0 chr6 144959198 144959219 -4557818 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1690 180 0 0 0 chr6 144959230 144959250 -4557787 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 8 1690 494 241 140 70 chr6 144959448 144959720 -4557317 + B4A SINE B4 2 292 0 8 1690 342 0 0 0 chr6 144959769 144959807 -4557230 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1690 685 279 100 15 chr6 144960117 144960317 -4556720 + ID_B1 SINE B4 2 218 -6 8 1690 211 278 107 38 chr6 144960578 144960709 -4556328 - MIR3 SINE MIR -32 176 37 8 1690 439 202 0 81 chr6 144960899 144960985 -4556052 - B3 SINE B2 -137 79 1 8 1690 22 35 0 0 chr6 144960986 144961015 -4556022 + AT_rich Low_complexity Low_complexity 1 29 0 8 1690 261 0 0 0 chr6 144961197 144961226 -4555811 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1690 522 0 0 0 chr6 144961737 144961795 -4555242 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1690 234 0 0 0 chr6 144961795 144961820 -4555217 + (GA)n Simple_repeat Simple_repeat 1 26 0 8 1690 344 172 0 99 chr6 144961848 144961919 -4555118 - B3A SINE B2 -75 123 60 8 1690 363 44 0 0 chr6 144962744 144962789 -4554248 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1690 387 0 0 0 chr6 144962789 144962831 -4554206 + (GA)n Simple_repeat Simple_repeat 1 43 0 8 1690 727 297 16 0 chr6 144962904 144963096 -4553941 - B4A SINE B4 -3 289 95 8 1690 315 105 0 0 chr6 144963434 144963491 -4553546 + (A)n Simple_repeat Simple_repeat 1 57 0 8 1690 231 328 0 15 chr6 144963554 144963619 -4553418 + ID_B1 SINE B4 135 198 -26 8 1690 842 211 30 0 chr6 144963622 144963788 -4553249 - B3A SINE B2 -24 174 4 8 1690 849 89 0 0 chr6 144964113 144964237 -4552800 + (GA)n Simple_repeat Simple_repeat 2 125 0 8 1690 346 283 139 16 chr6 144964262 144964384 -4552653 + RSINE1 SINE B4 10 146 -19 8 1690 619 269 19 6 chr6 144964648 144964809 -4552228 + RSINE1 SINE B4 3 165 0 8 1690 459 122 0 0 chr6 144965143 144965233 -4551804 + (TC)n Simple_repeat Simple_repeat 1 90 0 8 1690 297 281 20 59 chr6 144965436 144965538 -4551499 + MLT1E2 LTR MaLR 9 106 -521 8 1691 639 275 129 0 chr6 144965982 144966153 -4550884 + B3 SINE B2 1 193 -23 8 1691 414 0 0 0 chr6 144966377 144966423 -4550614 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1691 572 296 0 0 chr6 144966426 144966568 -4550469 - B3A SINE B2 -41 157 16 8 1691 2628 55 12 3 chr6 144967208 144967536 -4549501 + IAPEY_LTR LTR ERVK 55 385 0 8 1691 546 270 12 68 chr6 144968062 144968225 -4548812 + RSINE1 SINE B4 12 165 0 8 1691 1013 218 48 0 chr6 144968571 144968777 -4548260 + B3 SINE B2 1 216 0 8 1691 352 282 73 96 chr6 144969266 144969552 -4547485 + B4 SINE B4 31 275 -17 8 1691 360 191 0 0 chr6 144969557 144969646 -4547391 + (CA)n Simple_repeat Simple_repeat 2 90 0 8 1691 589 208 6 6 chr6 144969657 144969836 -4547201 + (CA)n Simple_repeat Simple_repeat 1 179 0 8 1691 312 261 41 65 chr6 144969982 144970105 -4546932 - RLTR25B LTR ERVK -468 560 441 8 1691 774 137 40 0 chr6 144970002 144970126 -4546911 - B1_Mus1 SINE Alu 0 148 20 8 1691 482 271 156 6 chr6 144970999 144971166 -4545871 + ORR1D2 LTR MaLR 175 366 -4 8 1691 915 130 0 0 chr6 144971352 144971498 -4545539 + (GAAAA)n Simple_repeat Simple_repeat 4 149 0 8 1691 707 155 162 36 chr6 144971970 144972137 -4544900 + B3 SINE B2 29 216 0 8 1691 318 67 0 0 chr6 144972269 144972314 -4544723 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1691 373 188 58 0 chr6 144972963 144973032 -4544005 + B1F SINE Alu 13 85 -64 8 1691 289 262 38 0 chr6 144972971 144973051 -4543986 + ID_B1 SINE B4 102 184 -40 8 1691 324 120 0 0 chr6 144973063 144973113 -4543924 + (GGA)n Simple_repeat Simple_repeat 2 51 0 8 1691 474 291 36 26 chr6 144973130 144973324 -4543713 + B3A SINE B2 2 197 -1 8 1691 1008 269 28 8 chr6 144973532 144973787 -4543250 - MTEa LTR MaLR -110 269 10 8 1691 1092 269 48 48 chr6 144974061 144974373 -4542664 + ORR1E LTR MaLR 47 358 -1 8 1691 1078 204 25 10 chr6 144974618 144974821 -4542216 - B3 SINE B2 -10 206 1 8 1691 4275 108 12 19 chr6 144974901 144976174 -4540863 + L1Md_A LINE L1 550 1811 -4072 8 1691 7447 49 30 2 chr6 144976174 144977113 -4539924 + L1Md_F2 LINE L1 5618 6582 0 8 1691 610 252 28 7 chr6 144977134 144977278 -4539759 + B1F1 SINE Alu 1 147 -2 8 1691 3071 70 2 15 chr6 144977569 144977974 -4539063 + MTB LTR MaLR 1 400 0 8 1691 598 55 11 11 chr6 144978017 144978109 -4538928 + (TCC)n Simple_repeat Simple_repeat 1 92 0 8 1691 302 220 60 68 chr6 144978812 144978929 -4538108 + PB1D9 SINE Alu 5 120 0 8 1691 361 323 8 31 chr6 144978946 144979074 -4537963 + B1F SINE Alu 13 137 -12 8 1691 2522 174 82 13 chr6 144979100 144979636 -4537401 + RMER15 LTR ERVL 1 573 -2 8 1691 746 194 29 0 chr6 144980211 144980350 -4536687 + B1_Mus2 SINE Alu 1 143 -4 8 1691 528 284 20 33 chr6 144980350 144980503 -4536534 + B3 SINE B2 55 205 -11 8 1691 248 255 0 0 chr6 144980593 144980644 -4536393 + RSINE1 SINE B4 2 52 -113 8 1691 272 48 24 0 chr6 144980946 144980988 -4536049 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1691 347 316 57 19 chr6 144981041 144981199 -4535838 + RSINE1 SINE B4 2 165 0 9 1691 441 0 0 0 chr6 144981229 144981278 -4535759 + (TA)n Simple_repeat Simple_repeat 2 50 0 9 1691 227 206 340 52 chr6 144981694 144981791 -4535246 + RSINE1 SINE B4 10 134 -31 9 1691 228 279 0 77 chr6 144982739 144982817 -4534220 + MIRc SINE MIR 72 144 -132 9 1691 212 143 57 0 chr6 144982887 144982922 -4534115 + RSINE1 SINE B4 91 127 -38 9 1691 222 261 0 0 chr6 144983399 144983445 -4533592 + G-rich Low_complexity Low_complexity 2 47 0 9 1691 280 267 0 0 chr6 144983445 144983505 -4533532 + RSINE1 SINE B4 82 141 -24 8 1691 483 18 0 0 chr6 144983520 144983576 -4533461 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1691 622 216 220 12 chr6 144983594 144983767 -4533270 + B4 SINE B4 40 248 -44 9 1691 198 0 0 0 chr6 144983773 144983795 -4533242 + (TC)n Simple_repeat Simple_repeat 2 23 0 9 1691 207 0 0 0 chr6 144983795 144983817 -4533220 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1691 2229 220 140 68 chr6 144984675 144985142 -4531895 - Lx6 LINE L1 -4 7456 6964 9 1691 222 37 0 0 chr6 144985142 144985169 -4531868 + (G)n Simple_repeat Simple_repeat 1 27 0 9 1691 2229 220 140 68 chr6 144985169 144985371 -4531666 - Lx6 LINE L1 -497 6963 6735 9 1691 189 0 0 0 chr6 144985371 144985392 -4531645 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 1691 2229 220 140 68 chr6 144985392 144985456 -4531581 - Lx6 LINE L1 -726 6734 6670 9 1691 260 278 42 0 chr6 144985600 144985672 -4531365 - ID4 SINE ID -2 81 7 9 1691 328 261 0 0 chr6 144985682 144985751 -4531286 + B1F SINE Alu 16 84 -36 9 1691 231 36 0 0 chr6 144985756 144985784 -4531253 + (TAA)n Simple_repeat Simple_repeat 2 29 0 9 1691 195 69 0 0 chr6 144986418 144986447 -4530590 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1691 411 238 0 29 chr6 144986604 144986708 -4530329 - 5S rRNA rRNA -20 101 1 9 1691 380 244 23 0 chr6 144986987 144987073 -4529964 - B3A SINE B2 -109 89 2 9 1691 285 337 32 0 chr6 144987609 144987704 -4529333 - B1F SINE Alu -25 124 27 9 1691 414 0 0 0 chr6 144987706 144987752 -4529285 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1691 542 262 20 20 chr6 144988502 144988650 -4528387 + RSINE1 SINE B4 1 148 -17 9 1691 875 239 5 59 chr6 144988720 144988942 -4528095 + B3 SINE B2 2 211 -5 9 1691 610 254 0 0 chr6 144988997 144989131 -4527906 + B1F1 SINE Alu 11 144 -5 9 1691 268 167 0 0 chr6 144989806 144989854 -4527183 - ID SINE ID -176 48 1 9 1691 534 277 43 43 chr6 144990038 144990200 -4526837 - RSINE1 SINE B4 -3 162 1 9 1691 180 340 18 55 chr6 144991019 144991128 -4525909 - L2a LINE L2 -295 3131 3027 9 1691 278 238 0 16 chr6 144991711 144991775 -4525262 + B4A SINE B4 6 68 -224 9 1691 358 300 52 32 chr6 144992201 144992356 -4524681 + B3A SINE B2 37 194 -4 9 1691 636 172 37 10 chr6 144992633 144992756 -4524281 - PB1D9 SINE Alu 0 150 20 9 1691 703 240 88 0 chr6 144992786 144992978 -4524059 + B3 SINE B2 2 210 -6 9 1691 673 232 40 60 chr6 144992987 144993138 -4523899 + B1_Mur1 SINE Alu 1 148 -1 9 1691 518 261 106 0 chr6 144993263 144993405 -4523632 + RSINE1 SINE B4 3 159 -6 9 1691 470 222 57 43 chr6 144993811 144993952 -4523085 + B3 SINE B2 7 149 -67 9 1691 195 42 0 0 chr6 144993962 144993986 -4523051 + (CACG)n Simple_repeat Simple_repeat 4 27 0 9 1691 201 253 25 12 chr6 144993990 144994070 -4522967 + GA-rich Low_complexity Low_complexity 2 82 0 9 1691 244 254 38 113 chr6 144994082 144994215 -4522822 + RSINE1 SINE B4 21 143 -22 9 1691 543 16 0 0 chr6 144994286 144994350 -4522687 + (GA)n Simple_repeat Simple_repeat 1 64 0 9 1691 269 270 40 26 chr6 144994490 144994566 -4522471 + ID4_ SINE ID 3 79 -4 9 1691 21 0 0 0 chr6 144995884 144995905 -4521132 + AT_rich Low_complexity Low_complexity 1 21 0 9 1691 257 287 38 38 chr6 144997602 144997707 -4519330 + PB1D7 SINE Alu 4 108 -12 9 1691 1141 246 29 32 chr6 144997899 144998214 -4518823 + Lx7 LINE L1 6297 6610 -1086 9 1691 1074 241 61 0 chr6 144998628 144998889 -4518148 + Lx7 LINE L1 6609 6885 -811 9 1691 469 234 63 31 chr6 144998978 144999137 -4517900 - ID_B1 SINE B4 -7 217 54 9 1691 590 37 12 0 chr6 144999290 144999371 -4517666 + (TG)n Simple_repeat Simple_repeat 2 83 0 9 1691 280 315 161 29 chr6 144999389 144999631 -4517406 - Charlie7 DNA MER1_type -2186 426 153 9 1691 449 281 142 9 chr6 144999758 144999984 -4517053 - Charlie2b DNA MER1_type -1209 1573 1318 9 1691 365 164 0 0 chr6 145000000 145000055 -4516982 - PB1D9 SINE Alu -32 88 34 1 1691 668 244 17 63 chr6 145000103 145000278 -4516759 + B3A SINE B2 2 168 -30 2 1691 461 224 47 0 chr6 145000515 145000622 -4516415 - MTD LTR MaLR -14 405 294 3 1691 749 202 81 6 chr6 145000617 145000791 -4516246 - MTD LTR MaLR -232 187 1 3 1691 315 203 16 0 chr6 145000954 145001018 -4516019 - MTEa LTR MaLR -2 377 313 4 1691 872 132 13 0 chr6 145001098 145001249 -4515788 + (GGAA)n Simple_repeat Simple_repeat 4 156 0 5 1691 297 109 0 0 chr6 145001559 145001614 -4515423 + (T)n Simple_repeat Simple_repeat 1 55 0 6 1691 254 276 175 79 chr6 145001675 145001746 -4515291 + ID_B1 SINE B4 88 156 -68 7 1691 666 160 91 8 chr6 145001746 145001878 -4515159 + B1_Mur2 SINE Alu 1 143 -6 8 1691 254 276 175 79 chr6 145001878 145001920 -4515117 + ID_B1 SINE B4 157 212 -12 7 1691 277 254 270 43 chr6 145002190 145002375 -4514662 - RMER15 LTR ERVL -13 562 336 9 1691 216 338 0 0 chr6 145002989 145003060 -4513977 + B4 SINE B4 8 78 -214 1 1691 320 188 0 0 chr6 145003005 145003062 -4513975 + ID4_ SINE ID 23 79 -73 1 1691 765 229 104 0 chr6 145003090 145003273 -4513764 + B3 SINE B2 1 202 -14 1 1691 243 0 0 0 chr6 145003277 145003304 -4513733 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 1691 552 273 14 21 chr6 145003504 145003646 -4513391 - B1_Mur1 SINE Alu -7 142 2 1 1691 545 289 28 50 chr6 145003652 145003834 -4513203 - B3A SINE B2 -14 184 7 1 1691 247 323 140 60 chr6 145003913 145004163 -4512874 - Charlie2b DNA MER1_type -2392 390 121 1 1691 410 190 25 0 chr6 145004196 145004275 -4512762 + RSINE1 SINE B4 4 84 -81 1 1691 247 256 67 89 chr6 145004381 145004471 -4512566 - B1F2 SINE Alu 0 149 62 1 1691 519 192 8 91 chr6 145004556 145004688 -4512349 - RLTR21 LTR ERVK -7 1565 1445 1 1691 225 284 0 56 chr6 145004937 145005008 -4512029 - MTB_Mm LTR MaLR -340 67 1 2 1691 554 137 10 10 chr6 145005070 145005166 -4511871 + RMER16 LTR ERVK 438 533 0 2 1691 917 213 5 20 chr6 145005166 145005367 -4511670 + RMER16-int LTR ERVK 1 198 -5208 2 1691 316 273 0 0 chr6 145005481 145005547 -4511490 + RMER16-int LTR ERVK 194 259 -5147 2 1691 1291 85 22 11 chr6 145005578 145005757 -4511280 + B2_Mm2 SINE B2 1 181 -14 2 1691 237 146 24 0 chr6 145005780 145005821 -4511216 + B4 SINE B4 41 82 -210 2 1691 421 87 29 0 chr6 145005785 145005887 -4511150 + B2_Mm2 SINE B2 47 195 0 2 1691 2215 104 51 5 chr6 145006532 145006880 -4510157 + RMER17A LTR ERVK 1 347 -404 2 1691 1132 97 0 0 chr6 145007091 145007236 -4509801 + B1_Mus2 SINE Alu 3 147 0 2 1691 22 0 0 0 chr6 145007236 145007258 -4509779 + AT_rich Low_complexity Low_complexity 1 22 0 2 1691 3540 122 76 57 chr6 145007279 145007365 -4509672 + RMER16-int LTR ERVK 1685 1765 -3641 2 1691 1326 91 0 6 chr6 145007365 145007542 -4509495 + B2_Mm2 SINE B2 1 176 -19 2 1691 3540 122 76 57 chr6 145007542 145008123 -4508914 + RMER16-int LTR ERVK 1766 2365 -3041 2 1691 346 265 0 12 chr6 145008124 145008208 -4508829 + ETnERV2-int LTR ERVK 5954 6036 -1370 2 1691 7793 135 29 18 chr6 145008673 145009952 -4507085 + RMER16-int LTR ERVK 4111 5403 -3 2 1691 972 222 53 82 chr6 145009953 145010329 -4506708 + RMER16 LTR ERVK 1 533 0 2 1691 5660 121 130 27 chr6 145010329 145010719 -4506318 - RLTR21 LTR ERVK -460 1112 694 3 1691 1202 56 0 0 chr6 145010719 145010861 -4506176 + B1_Mus1 SINE Alu 1 142 -6 3 1691 185 65 32 0 chr6 145010862 145010893 -4506144 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1691 5660 121 130 27 chr6 145010893 145011508 -4505529 - RLTR21 LTR ERVK -879 693 1 3 1691 205 211 0 0 chr6 145011699 145011737 -4505300 + T-rich Low_complexity Low_complexity 1 38 0 3 1691 1495 32 20 64 chr6 145012437 145012639 -4504398 + B2_Mm1a SINE B2 1 193 0 3 1691 455 186 58 10 chr6 145012756 145012859 -4504178 + RSINE1 SINE B4 4 111 -54 3 1691 195 42 0 0 chr6 145012891 145012915 -4504122 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1691 988 201 84 65 chr6 145013598 145013958 -4503079 + RMER13A LTR ERVK 186 559 -349 3 1691 492 217 132 8 chr6 145014239 145014360 -4502677 + B1_Mur1 SINE Alu 13 148 -1 3 1691 355 309 0 56 chr6 145014800 145014944 -4502093 - ID_B1 SINE B4 -3 221 86 3 1691 22 70 0 0 chr6 145015421 145015464 -4501573 + AT_rich Low_complexity Low_complexity 1 43 0 4 1691 731 253 34 6 chr6 145015577 145015752 -4501285 + B3A SINE B2 3 182 -16 4 1691 21 36 0 0 chr6 145015779 145015807 -4501230 + AT_rich Low_complexity Low_complexity 1 28 0 4 1691 378 0 0 0 chr6 145015854 145015896 -4501141 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1691 387 0 0 0 chr6 145015896 145015938 -4501099 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1691 2355 78 3 21 chr6 145016438 145016766 -4500271 + RLTR8 LTR ERVK 26 347 -18 4 1691 510 250 83 0 chr6 145016766 145016910 -4500127 + RSINE1 SINE B4 4 159 -6 4 1691 2136 147 73 3 chr6 145017374 145017742 -4499295 + ORR1B1 LTR MaLR 1 394 0 4 1691 380 313 34 34 chr6 145017780 145017899 -4499138 - ID_B1 SINE B4 -20 204 86 4 1691 2617 136 19 43 chr6 145018443 145018906 -4498131 - RLTR11B LTR ERVK -1 452 1 4 1691 1191 65 65 0 chr6 145018932 145019101 -4497936 - B2_Mm2 SINE B2 0 195 16 5 1691 243 0 0 0 chr6 145019123 145019150 -4497887 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1691 4829 61 58 6 chr6 145019164 145019538 -4497499 + RLTR13B1 LTR ERVK 204 577 -316 5 1691 1432 58 17 0 chr6 145019538 145019712 -4497325 - B2_Mm2 SINE B2 -17 178 2 5 1691 4829 61 58 6 chr6 145019712 145019993 -4497044 + RLTR13B1 LTR ERVK 578 891 -2 5 1691 757 223 5 53 chr6 145020218 145020426 -4496611 + B3A SINE B2 1 198 0 5 1691 231 295 308 18 chr6 145020723 145020937 -4496100 + B4A SINE B4 2 278 -14 5 1691 231 310 0 33 chr6 145020911 145020971 -4496066 + RSINE1 SINE B4 108 165 0 5 1691 351 330 18 0 chr6 145021027 145021136 -4495901 + RSINE1 SINE B4 9 119 -46 5 1691 673 183 240 12 chr6 145021137 145021308 -4495729 + B3 SINE B2 1 210 -6 5 1691 3178 51 8 2 chr6 145021360 145021754 -4495283 - MTA_Mm LTR MaLR 0 396 1 5 1691 3459 151 51 88 chr6 145021999 145022784 -4494253 - RMER6A LTR ERVK 0 756 1 6 1691 416 303 55 0 chr6 145022926 145023035 -4494002 - ID_B1 SINE B4 -16 208 94 6 1691 212 288 192 0 chr6 145022970 145023043 -4493994 - 7SLRNA srpRNA srpRNA -227 87 1 6 1691 250 219 8 47 chr6 145023453 145023582 -4493455 + GA-rich Low_complexity Low_complexity 2 125 0 6 1691 195 42 0 0 chr6 145023586 145023610 -4493427 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 6 1691 24 32 0 0 chr6 145024885 145024916 -4492121 + AT_rich Low_complexity Low_complexity 1 31 0 6 1691 316 217 29 0 chr6 145024955 145025024 -4492013 - RSINE1 SINE B4 -37 128 58 6 1691 742 240 58 53 chr6 145025307 145025323 -4491714 - B3 SINE B2 -25 191 177 6 1691 207 0 0 0 chr6 145025323 145025346 -4491691 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1691 1237 103 7 1 chr6 145025346 145025518 -4491519 - B2_Mm1a SINE B2 -40 176 2 6 1691 1226 126 10 21 chr6 145025538 145025732 -4491305 - B2_Mm2 SINE B2 -2 193 2 6 1691 210 231 39 0 chr6 145025976 145026028 -4491009 + PB1 SINE Alu 1 54 -73 7 1691 371 158 68 0 chr6 145026028 145026174 -4490863 + (CA)n Simple_repeat Simple_repeat 2 157 0 7 1691 542 41 14 0 chr6 145026546 145026619 -4490418 + (TTGG)n Simple_repeat Simple_repeat 2 75 0 7 1691 264 295 21 10 chr6 145026626 145026722 -4490315 - B1F1 SINE Alu -47 102 6 7 1691 811 266 69 149 chr6 145026986 145027449 -4489588 + RLTR23 LTR ERV1 5 430 0 7 1691 1089 68 0 45 chr6 145028067 145028144 -4488893 + B1_Mus1 SINE Alu 1 75 -73 7 1691 4171 55 66 8 chr6 145028144 145028673 -4488364 + LTRIS2 LTR ERV1 5 564 0 7 1691 1089 68 0 45 chr6 145028673 145028750 -4488287 + B1_Mus1 SINE Alu 76 148 0 7 1691 623 335 12 42 chr6 145029410 145029669 -4487368 - Lx9 LINE L1 -339 7305 7055 7 1691 302 85 0 0 chr6 145029748 145029795 -4487242 - B1_Mur4 SINE Alu 0 150 104 7 1691 679 205 8 0 chr6 145030444 145030571 -4486466 + ID_B1 SINE B4 80 207 -17 7 1691 522 355 11 0 chr6 145030966 145031149 -4485888 + B3A SINE B2 14 198 0 8 1691 432 0 0 0 chr6 145031946 145031994 -4485043 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1691 350 232 41 31 chr6 145032025 145032123 -4484914 + B1F SINE Alu 6 104 -45 8 1691 288 305 86 0 chr6 145032416 145032521 -4484516 + RMER12 LTR ERVK 743 856 -466 8 1691 302 210 0 16 chr6 145032515 145032578 -4484459 - B4A SINE B4 -2 290 229 8 1691 299 122 0 0 chr6 145032578 145032619 -4484418 + ORR1C2 LTR MaLR 1 41 -343 8 1691 669 25 0 0 chr6 145032637 145032716 -4484321 + (TC)n Simple_repeat Simple_repeat 2 80 0 8 1691 559 119 168 0 chr6 145032749 145032850 -4484187 + ORR1C2 LTR MaLR 265 382 -2 8 1691 487 319 29 7 chr6 145033261 145033397 -4483640 - B4 SINE B4 -55 237 99 8 1691 874 151 0 95 chr6 145033361 145033551 -4483486 - RLTR17 LTR ERVK -520 172 1 8 1691 5545 181 68 49 chr6 145033551 145035729 -4481308 - RMER3D-int LTR ERVK 0 2842 10 8 1691 262 186 83 17 chr6 145035768 145035828 -4481209 - RLTR17 LTR ERVK -77 615 552 8 1691 870 118 0 7 chr6 145035828 145035965 -4481072 - RMER3D-int LTR ERVK -177 2665 2530 9 1691 261 0 0 0 chr6 145035965 145035994 -4481043 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1691 720 242 13 0 chr6 145035999 145036148 -4480889 - B3A SINE B2 -47 151 1 9 1691 393 39 0 0 chr6 145036161 145036212 -4480825 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 9 1691 267 260 0 0 chr6 145036212 145036262 -4480775 - B1_Mur4 SINE Alu -11 139 90 9 1691 596 202 0 32 chr6 145036413 145036536 -4480501 - PB1D9 SINE Alu 0 120 2 9 1691 255 152 0 0 chr6 145036570 145036616 -4480421 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1691 602 254 27 48 chr6 145036617 145036803 -4480234 - B3A SINE B2 -16 182 1 9 1691 226 243 38 75 chr6 145036885 145036965 -4480072 + PB1D7 SINE Alu 43 119 -1 9 1691 21 0 0 0 chr6 145037072 145037093 -4479944 + AT_rich Low_complexity Low_complexity 1 21 0 9 1691 373 221 0 0 chr6 145037516 145037584 -4479453 + PB1D7 SINE Alu 53 120 0 1 1691 307 367 29 92 chr6 145037599 145037704 -4479333 + ID_B1 SINE B4 29 222 -2 1 1691 359 265 49 0 chr6 145037704 145037806 -4479231 + B1F1 SINE Alu 41 147 -2 1 1691 2001 196 110 29 chr6 145037893 145038385 -4478652 + RMER1C Other Other 368 1342 0 1 1691 1247 28 7 0 chr6 145038473 145038617 -4478420 + B1_Mm SINE Alu 2 146 -1 1 1691 393 264 139 8 chr6 145038623 145038745 -4478292 + ID_B1 SINE B4 80 217 -7 1 1691 260 200 15 0 chr6 145038769 145038834 -4478203 + GA-rich Low_complexity Low_complexity 3 68 0 1 1691 369 258 70 11 chr6 145038841 145038971 -4478066 + B3 SINE B2 67 198 0 1 1691 206 139 28 0 chr6 145039270 145039306 -4477731 + (TATG)n Simple_repeat Simple_repeat 2 38 0 1 1691 707 249 5 117 chr6 145039306 145039529 -4477508 + ID_B1 SINE B4 11 208 -16 1 1691 393 229 113 9 chr6 145040090 145040196 -4476841 + ID_B1 SINE B4 4 120 -104 1 1691 248 212 212 2 chr6 145040169 145040240 -4476797 + PB1D10 SINE Alu 13 98 -51 1 1691 222 118 0 0 chr6 145040240 145040274 -4476763 + (GAGAA)n Simple_repeat Simple_repeat 4 37 0 1 1691 477 0 0 0 chr6 145040405 145040458 -4476579 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1691 496 191 25 42 chr6 145041069 145041189 -4475848 - PB1D7 SINE Alu -2 118 1 1 1691 236 30 30 0 chr6 145041493 145041526 -4475511 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1691 314 230 241 0 chr6 145041676 145041763 -4475274 + PB1D7 SINE Alu 5 112 -8 1 1691 261 83 0 0 chr6 145042017 145042053 -4474984 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 1 1691 603 158 104 8 chr6 145042067 145042201 -4474836 - B1_Mus2 SINE Alu 0 147 1 1 1691 572 211 47 15 chr6 145042313 145042471 -4474566 + B3 SINE B2 1 164 -34 1 1691 486 0 0 0 chr6 145042476 145042530 -4474507 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1691 1076 182 59 0 chr6 145042619 145042822 -4474215 - B3 SINE B2 0 216 2 1 1691 293 266 25 74 chr6 145042848 145042970 -4474067 + PB1D9 SINE Alu 3 118 -2 1 1691 499 281 62 73 chr6 145043094 145043271 -4473766 - ID_B1 SINE B4 0 224 50 1 1691 686 198 129 53 chr6 145044781 145044952 -4472085 + B3A SINE B2 9 192 -6 1 1691 187 189 148 19 chr6 145045256 145045310 -4471727 + MIRc SINE MIR 91 151 -117 1 1691 24 24 0 24 chr6 145045475 145045493 -4471544 + AT_rich Low_complexity Low_complexity 1 18 0 1 1691 927 141 14 0 chr6 145045493 145045635 -4471402 + B1_Mur4 SINE Alu 1 144 -6 1 1691 24 24 0 24 chr6 145045635 145045658 -4471379 + AT_rich Low_complexity Low_complexity 1 23 0 1 1691 549 0 0 0 chr6 145045732 145045793 -4471244 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1691 387 0 0 0 chr6 145045794 145045837 -4471200 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1691 1126 30 37 0 chr6 145045837 145045971 -4471066 - B1_Mus1 SINE Alu -9 139 1 1 1691 602 300 21 0 chr6 145045988 145046178 -4470859 - ID_B1 SINE B4 -30 194 1 1 1691 21 0 0 0 chr6 145046289 145046310 -4470727 + AT_rich Low_complexity Low_complexity 1 21 0 1 1691 1149 171 24 0 chr6 145046317 145046522 -4470515 - B3 SINE B2 -6 210 1 1 1691 734 193 28 0 chr6 145047357 145047502 -4469535 + B1_Mur2 SINE Alu 1 149 0 1 1691 387 0 0 0 chr6 145047580 145047623 -4469414 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1691 348 83 0 0 chr6 145047721 145047769 -4469268 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 1 1691 1031 52 89 0 chr6 145047770 145047905 -4469132 - B1_Mus2 SINE Alu 0 147 1 1 1691 1045 182 38 47 chr6 145047925 145048138 -4468899 - B3 SINE B2 0 216 6 1 1691 1460 53 32 0 chr6 145048382 145048569 -4468468 + B2_Mm2 SINE B2 1 193 -2 1 1691 1478 89 0 0 chr6 145048571 145048762 -4468275 + B2_Mm2 SINE B2 1 191 -4 1 1691 872 245 45 93 chr6 145048869 145049380 -4467657 - RLTR11B LTR ERVK 0 453 1 1 1691 256 247 45 45 chr6 145049928 145050017 -4467020 + RSINE1 SINE B4 75 163 -2 1 1691 315 275 100 0 chr6 145050212 145050292 -4466745 - RSINE1 SINE B4 -4 161 74 1 1691 486 292 26 7 chr6 145050406 145050561 -4466476 + RSINE1 SINE B4 4 161 -4 1 1691 296 321 13 13 chr6 145050631 145050710 -4466327 + ID_B1 SINE B4 34 112 -112 1 1691 768 161 126 21 chr6 145050713 145050903 -4466134 + RLTR11A LTR ERVK 1 210 -318 1 1691 406 238 160 24 chr6 145051211 145051336 -4465701 - B1F SINE Alu -7 142 1 1 1691 1180 251 119 53 chr6 145051675 145052112 -4464925 - L1MB7 LINE L1 -109 6075 5610 1 1691 246 128 0 0 chr6 145052521 145052560 -4464477 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1691 423 138 0 0 chr6 145052560 145052647 -4464390 + (GA)n Simple_repeat Simple_repeat 2 88 0 1 1691 384 243 181 7 chr6 145052664 145052813 -4464224 - B3 SINE B2 -41 175 1 1 1691 28 29 0 0 chr6 145053421 145053456 -4463581 + AT_rich Low_complexity Low_complexity 1 35 0 1 1691 231 61 0 0 chr6 145053795 145053828 -4463209 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1 1691 1187 48 0 7 chr6 145053833 145053980 -4463057 - B1_Mus2 SINE Alu -1 146 1 1 1691 225 0 0 0 chr6 145054284 145054309 -4462728 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1691 27 29 0 0 chr6 145054322 145054356 -4462681 + AT_rich Low_complexity Low_complexity 1 34 0 1 1691 465 270 87 0 chr6 145054383 145054498 -4462539 + ID_B1 SINE B4 82 206 -18 1 1691 1249 54 0 0 chr6 145055213 145055360 -4461677 - B1_Mus2 SINE Alu 0 147 1 1 1691 744 113 0 0 chr6 145056198 145056304 -4460733 - B2_Mm2 SINE B2 -88 107 2 1 1691 207 257 0 0 chr6 145056458 145056532 -4460505 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 1 1691 632 211 0 12 chr6 145056538 145056711 -4460326 + (TGGG)n Simple_repeat Simple_repeat 2 172 0 1 1691 309 268 19 58 chr6 145056714 145056817 -4460220 + B1_Mur2 SINE Alu 50 148 -1 1 1691 2010 139 98 6 chr6 145056788 145057136 -4459901 + RLTR14 LTR ERV1 3 382 0 1 1691 297 116 154 115 chr6 145057136 145057178 -4459859 + B1_Mur1 SINE Alu 98 142 -7 1 1691 574 221 44 0 chr6 145057339 145057475 -4459562 - B1F1 SINE Alu -3 146 5 1 1691 514 232 97 95 chr6 145057591 145057864 -4459173 - RLTR11B LTR ERVK -32 496 241 1 1691 320 225 21 43 chr6 145057882 145057975 -4459062 - RLTR11B LTR ERVK -437 91 1 1 1691 362 263 20 10 chr6 145059074 145059174 -4457863 - HAL1-3A_ME LINE L1 -782 2076 1976 1 1691 1137 144 0 0 chr6 145059174 145059417 -4457620 + (TG)n Simple_repeat Simple_repeat 1 243 0 1 1691 221 371 0 0 chr6 145059915 145060004 -4457033 + G-rich Low_complexity Low_complexity 2 90 0 1 1691 901 244 72 0 chr6 145060813 145061022 -4456015 - ID_B1 SINE B4 0 224 1 1 1691 2721 43 0 0 chr6 145062034 145062356 -4454681 - L1_Mus1 LINE L1 -6 6561 6240 1 1691 232 333 0 31 chr6 145062924 145063020 -4454017 + CT-rich Low_complexity Low_complexity 3 95 0 1 1691 344 297 86 48 chr6 145063020 145063259 -4453778 - RMER12 LTR ERVK -466 856 690 1 1691 327 298 202 0 chr6 145063304 145063428 -4453609 + B4A SINE B4 122 270 -22 1 1691 184 59 29 29 chr6 145063480 145063515 -4453522 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 1691 22 0 0 0 chr6 145063536 145063558 -4453479 + AT_rich Low_complexity Low_complexity 1 22 0 1 1691 48 53 0 0 chr6 145063762 145063838 -4453199 + AT_rich Low_complexity Low_complexity 1 76 0 1 1691 540 81 0 0 chr6 145063893 145063967 -4453070 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1691 1825 139 129 27 chr6 145064011 145064344 -4452693 + ORR1B2 LTR MaLR 1 367 0 1 1691 343 261 0 7 chr6 145064394 145064487 -4452550 - B3A SINE B2 -22 194 104 1 1691 1353 86 16 0 chr6 145065833 145066019 -4451018 - B2_Mm2 SINE B2 -5 190 2 1 1691 431 66 29 2 chr6 145066542 145066645 -4450392 + B2_Mm2 SINE B2 47 188 -7 1 1691 515 288 128 94 chr6 145066645 145066744 -4450293 + L1MB1 LINE L1 4547 4657 -1483 1 1691 270 0 0 0 chr6 145066744 145066774 -4450263 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1691 515 288 128 94 chr6 145066774 145067127 -4449910 + L1MB1 LINE L1 4658 4970 -1170 1 1691 1194 68 0 0 chr6 145067127 145067274 -4449763 + B1_Mus1 SINE Alu 2 148 0 1 1691 515 288 128 94 chr6 145067274 145067522 -4449515 + L1MB1 LINE L1 4971 5271 -869 1 1691 643 270 30 30 chr6 145067583 145067751 -4449286 + B3 SINE B2 22 189 -27 1 1691 585 258 195 45 chr6 145067845 145068181 -4448856 + L1MB1 LINE L1 5722 6116 -52 1 1691 269 315 31 61 chr6 145068291 145068389 -4448648 + ID_B1 SINE B4 2 96 -128 1 1691 1489 217 76 32 chr6 145068461 145068895 -4448142 - RLTR20B3 LTR ERVK -109 468 16 1 1691 598 197 86 0 chr6 145068894 145069011 -4448026 + ID_B1 SINE B4 92 218 -6 1 1691 776 191 28 7 chr6 145071009 145071151 -4445886 - B1_Mur1 SINE Alu 0 149 5 1 1691 189 0 0 0 chr6 145071982 145072003 -4445034 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1691 21 0 0 0 chr6 145072650 145072671 -4444366 + AT_rich Low_complexity Low_complexity 1 21 0 1 1691 852 219 71 0 chr6 145072782 145072887 -4444150 - B3 SINE B2 -6 210 104 1 1691 279 0 0 0 chr6 145072887 145072918 -4444119 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1691 852 219 71 0 chr6 145072918 145073008 -4444029 - B3 SINE B2 -113 103 2 1 1691 642 209 14 43 chr6 145073019 145073159 -4443878 - ID_B1 SINE B4 0 224 89 1 1691 561 315 12 30 chr6 145073814 145073981 -4443056 + RSINE1 SINE B4 2 165 0 1 1691 267 271 78 70 chr6 145074063 145074178 -4442859 + MIR SINE MIR 5 120 -142 1 1691 798 232 35 6 chr6 145074773 145074942 -4442095 - B3A SINE B2 0 198 25 1 1691 180 0 0 0 chr6 145074951 145074971 -4442066 + (TTA)n Simple_repeat Simple_repeat 3 22 0 2 1691 620 211 32 0 chr6 145074972 145075128 -4441909 - Lx9 LINE L1 -1 7643 7483 2 1691 295 292 0 0 chr6 145075129 145075194 -4441843 - B3A SINE B2 -44 154 90 2 1691 183 206 0 30 chr6 145075251 145075325 -4441712 + (TCTCTG)n Simple_repeat Simple_repeat 5 76 0 2 1691 375 73 0 0 chr6 145075325 145075380 -4441657 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 2 1691 183 206 0 30 chr6 145075380 145075405 -4441632 + (TCTCTG)n Simple_repeat Simple_repeat 5 28 0 2 1691 863 139 0 6 chr6 145075410 145075591 -4441446 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1691 786 161 13 40 chr6 145075597 145075746 -4441291 - B1_Mur2 SINE Alu 0 149 5 2 1691 300 320 159 43 chr6 145075989 145076247 -4440790 - L1ME1 LINE L1 -312 5867 5580 2 1691 1084 191 40 0 chr6 145076251 145076450 -4440587 + B3 SINE B2 5 211 -5 2 1691 501 17 0 0 chr6 145076739 145076797 -4440240 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1691 965 132 7 14 chr6 145076797 145076933 -4440104 - B1_Mus2 SINE Alu -9 138 2 2 1691 561 245 43 0 chr6 145077920 145078059 -4438978 + B1F SINE Alu 5 149 0 2 1691 459 286 0 35 chr6 145078081 145078197 -4438840 + B4 SINE B4 17 128 -164 2 1691 514 294 21 14 chr6 145078327 145078472 -4438565 + B4A SINE B4 125 270 -22 2 1691 411 277 39 19 chr6 145078627 145078730 -4438307 - PB1D10 SINE Alu -12 105 1 2 1691 1027 191 32 32 chr6 145078756 145078972 -4438065 - B3 SINE B2 0 216 1 2 1691 27 0 0 0 chr6 145079271 145079298 -4437739 + AT_rich Low_complexity Low_complexity 1 27 0 2 1691 671 65 11 0 chr6 145079300 145079393 -4437644 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 2 1691 1217 48 7 0 chr6 145079394 145079539 -4437498 - B1_Mus2 SINE Alu -1 146 1 2 1691 474 293 118 2 chr6 145079562 145079728 -4437309 - B3 SINE B2 -7 209 17 2 1691 444 37 0 0 chr6 145079734 145079788 -4437249 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 2 1691 500 248 64 82 chr6 145079802 145079973 -4437064 - B3A SINE B2 -29 169 2 2 1691 223 273 0 0 chr6 145080194 145080249 -4436788 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1691 25 66 0 38 chr6 145080432 145080511 -4436526 + AT_rich Low_complexity Low_complexity 1 76 0 2 1691 1728 178 20 28 chr6 145080520 145080872 -4436165 - Lx4A LINE L1 -2 7056 6708 2 1691 323 244 30 75 chr6 145080872 145080995 -4436042 - L1MCa LINE L1 -4547 1961 1844 2 1691 1443 262 22 11 chr6 145081001 145081360 -4435677 - Lx6 LINE L1 -26 7434 7072 2 1691 327 261 117 0 chr6 145081686 145081797 -4435240 - RSINE1 SINE B4 -29 136 13 2 1691 726 215 14 27 chr6 145082252 145082400 -4434637 + B1_Mur1 SINE Alu 1 146 -3 2 1691 928 221 54 0 chr6 145082433 145082637 -4434400 + B3 SINE B2 1 215 -1 2 1691 901 168 6 6 chr6 145082753 145082933 -4434104 + CT-rich Low_complexity Low_complexity 1 180 0 2 1691 383 240 60 0 chr6 145083262 145083362 -4433675 - B1F SINE Alu -8 141 36 2 1691 345 309 21 21 chr6 145083362 145083398 -4433639 - ID_B1 SINE B4 -2 205 81 2 1691 961 193 40 6 chr6 145083517 145083694 -4433343 - B3 SINE B2 -6 210 28 2 1691 851 226 67 0 chr6 145084798 145084993 -4432044 - B3 SINE B2 0 216 9 2 1691 213 362 28 9 chr6 145085054 145085160 -4431877 - MIRb SINE MIR -108 160 53 2 1691 261 0 0 0 chr6 145085188 145085217 -4431820 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1691 844 83 0 0 chr6 145085217 145085325 -4431712 - B1_Mus1 SINE Alu -11 137 30 2 1691 329 294 0 61 chr6 145085241 145085339 -4431698 - MT2B LTR ERVL -337 264 173 2 1691 558 366 19 5 chr6 145085483 145085697 -4431340 - MER58A DNA MER1_type -1 223 7 2 1691 884 228 14 36 chr6 145086994 145087213 -4429824 + B3 SINE B2 3 216 0 2 1691 333 309 44 0 chr6 145087662 145087798 -4429239 - L1MB5 LINE L1 -184 5990 5849 2 1691 431 305 110 23 chr6 145087995 145088213 -4428824 - L1MB5 LINE L1 -672 5570 5334 2 1691 266 324 94 47 chr6 145088568 145088759 -4428278 - MIRb SINE MIR -32 236 37 2 1691 512 281 31 50 chr6 145089872 145090033 -4427004 - RSINE1 SINE B4 -5 160 3 2 1691 383 311 48 16 chr6 145090044 145090061 -4426976 - ID_B1 SINE B4 -7 217 90 2 1691 404 295 47 19 chr6 145090061 145090168 -4426869 - B1F SINE Alu -31 118 9 2 1691 607 227 63 25 chr6 145090246 145090404 -4426633 - RSINE1 SINE B4 0 165 2 2 1691 909 0 0 0 chr6 145090911 145091012 -4426025 + (TC)n Simple_repeat Simple_repeat 1 101 0 2 1691 202 330 136 0 chr6 145091421 145091524 -4425513 + MIRb SINE MIR 36 152 -116 2 1691 251 174 66 80 chr6 145092311 145092402 -4424635 + B1_Mm SINE Alu 23 106 -41 2 1691 982 229 55 0 chr6 145092517 145092718 -4424319 - B3 SINE B2 -4 212 1 2 1691 279 71 0 0 chr6 145092726 145092768 -4424269 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1691 249 33 0 0 chr6 145092768 145092798 -4424239 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1691 725 277 6 0 chr6 145092816 145092975 -4424062 - B3A SINE B2 -38 160 1 2 1691 453 36 0 0 chr6 145093787 145093842 -4423195 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1691 209 362 0 71 chr6 145094131 145094244 -4422793 - L2 LINE L2 -3222 197 93 2 1691 35 24 0 0 chr6 145094929 145094971 -4422066 + AT_rich Low_complexity Low_complexity 1 42 0 2 1691 2953 91 42 62 chr6 145094971 145095451 -4421586 - Lx3A LINE L1 -4 6977 6508 2 1691 21 0 0 0 chr6 145095812 145095833 -4421204 + AT_rich Low_complexity Low_complexity 1 21 0 2 1691 24 0 0 0 chr6 145095850 145095874 -4421163 + AT_rich Low_complexity Low_complexity 1 24 0 2 1691 419 276 85 74 chr6 145095874 145096050 -4420987 - B3A SINE B2 -2 196 19 2 1692 376 213 13 39 chr6 145096959 145097037 -4420000 - B1_Mur1 SINE Alu -36 113 38 2 1692 24 0 0 0 chr6 145097100 145097124 -4419913 + AT_rich Low_complexity Low_complexity 1 24 0 2 1692 848 127 215 0 chr6 145097140 145097298 -4419739 - B2_Mm2 SINE B2 -2 193 2 2 1692 342 259 0 11 chr6 145098186 145098462 -4418575 + (TG)n Simple_repeat Simple_repeat 1 272 0 2 1692 249 151 0 0 chr6 145098491 145098544 -4418493 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1692 233 75 25 0 chr6 145098581 145098621 -4418416 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1692 461 213 0 6 chr6 145098871 145099041 -4417996 + (TG)n Simple_repeat Simple_repeat 1 169 0 2 1692 499 222 30 0 chr6 145099573 145099672 -4417365 - PB1D10 SINE Alu 0 117 16 2 1692 15572 197 106 38 chr6 145100113 145101843 -4415194 - Lx7 LINE L1 0 7696 5831 2 1692 531 0 0 0 chr6 145101843 145101902 -4415135 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 2 1692 15572 166 208 19 chr6 145101902 145103061 -4413976 - Lx7 LINE L1 -50 5830 4637 2 1692 254 29 29 0 chr6 145103061 145103096 -4413941 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1692 15572 163 174 16 chr6 145103096 145106365 -4410672 - Lx7 LINE L1 -1244 4636 631 2 1692 381 280 0 21 chr6 145106616 145106711 -4410326 + PB1D10 SINE Alu 25 117 0 2 1692 389 81 0 16 chr6 145106725 145106788 -4410249 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1692 351 0 0 0 chr6 145107639 145107678 -4409359 + (TTA)n Simple_repeat Simple_repeat 3 41 0 2 1692 559 294 138 5 chr6 145107681 145107876 -4409161 + ID_B1 SINE B4 2 222 -2 2 1692 1207 248 116 0 chr6 145108259 145108577 -4408460 - MTEa LTR MaLR 0 379 25 2 1692 220 144 27 71 chr6 145109106 145109218 -4407819 + CT-rich Low_complexity Low_complexity 1 107 0 2 1692 860 109 17 28 chr6 145109585 145109764 -4407273 + CT-rich Low_complexity Low_complexity 4 180 0 2 1692 410 286 9 26 chr6 145109792 145109907 -4407130 - B1F SINE Alu -35 114 2 2 1692 617 275 51 24 chr6 145109923 145110176 -4406861 - L1M3 LINE L1 -1152 4988 4729 2 1692 259 218 16 98 chr6 145110204 145110265 -4406772 - RSINE1 SINE B4 -1 164 109 2 1692 250 252 55 31 chr6 145110419 145110542 -4406495 - L1M3 LINE L1 -1383 4763 4632 2 1692 444 276 120 48 chr6 145110693 145111111 -4405926 - L1M3 LINE L1 -1615 4525 4078 2 1692 195 42 0 0 chr6 145111310 145111334 -4405703 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1692 1197 61 0 0 chr6 145111334 145111481 -4405556 - B1_Mus1 SINE Alu 0 148 2 2 1692 281 225 157 8 chr6 145111637 145111758 -4405279 - L1M3 LINE L1 -2576 3567 3429 2 1692 1919 208 30 75 chr6 145112350 145112802 -4404235 - ORR1D1 LTR MaLR -2 377 112 2 1692 2215 108 12 3 chr6 145112802 145113126 -4403911 - ORR1A2 LTR MaLR 0 327 1 2 1692 1919 167 18 18 chr6 145113126 145113250 -4403787 - ORR1D1 LTR MaLR -250 124 1 2 1692 464 316 120 47 chr6 145114893 145115252 -4401785 + L2 LINE L2 1406 1790 -1629 2 1692 351 0 0 0 chr6 145116260 145116299 -4400738 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1692 383 318 30 15 chr6 145116310 145116444 -4400593 - RSINE1 SINE B4 -22 143 8 2 1692 526 256 143 6 chr6 145116662 145116823 -4400214 + B3A SINE B2 2 184 -14 2 1692 236 175 35 0 chr6 145116846 145116903 -4400134 + CT-rich Low_complexity Low_complexity 1 59 0 2 1692 649 239 21 7 chr6 145116908 145117051 -4399986 - B1_Mus2 SINE Alu -1 146 2 2 1692 356 278 89 89 chr6 145116909 145117067 -4399970 - B4 SINE B4 -69 223 66 2 1692 407 130 80 40 chr6 145117890 145117974 -4399063 - ORR1B1 LTR MaLR -8 386 272 2 1692 318 125 0 0 chr6 145117949 145117997 -4399040 - MT2B2 LTR ERVL -340 244 197 2 1692 243 275 0 127 chr6 145117997 145118018 -4399019 - 4.5SRNA scRNA scRNA 0 74 26 2 1692 564 194 348 0 chr6 145118071 145118226 -4398811 + B3 SINE B2 1 209 -7 2 1692 468 0 0 0 chr6 145119360 145119412 -4397625 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2 1692 207 69 0 0 chr6 145120380 145120409 -4396628 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 2 1692 540 203 18 36 chr6 145120962 145121090 -4395947 - PB1D7 SINE Alu -22 127 10 2 1692 234 221 214 34 chr6 145121757 145121874 -4395163 + B4A SINE B4 82 219 -73 2 1692 363 264 18 9 chr6 145121772 145121883 -4395154 + PB1D9 SINE Alu 9 120 0 2 1692 200 34 0 33 chr6 145122372 145122402 -4394635 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 3 1692 206 367 81 10 chr6 145124868 145124967 -4392070 + L2 LINE L2 2761 2866 -553 3 1692 440 301 119 25 chr6 145126407 145126567 -4390470 - MER33 DNA MER1_type -115 209 35 3 1692 245 194 149 27 chr6 145126594 145126668 -4390369 + B3 SINE B2 128 210 -6 3 1692 352 175 32 0 chr6 145126898 145126961 -4390076 - B1_Mur3 SINE Alu -83 66 2 3 1692 248 258 149 11 chr6 145126961 145126993 -4390044 - B4 SINE B4 -204 88 44 3 1692 21 0 0 0 chr6 145128037 145128058 -4388979 + AT_rich Low_complexity Low_complexity 1 21 0 3 1692 867 111 29 36 chr6 145128069 145128209 -4388828 - B1_Mur3 SINE Alu -10 139 1 3 1692 616 246 60 20 chr6 145128270 145128469 -4388568 - B3 SINE B2 -7 209 3 3 1692 380 298 35 0 chr6 145128764 145128878 -4388159 + B1F2 SINE Alu 3 120 -29 3 1692 265 356 84 30 chr6 145129120 145129357 -4387680 - B4A SINE B4 -19 273 24 3 1692 366 252 86 36 chr6 145129438 145129578 -4387459 + RSINE1 SINE B4 3 149 -16 3 1692 347 316 0 0 chr6 145129672 145129748 -4387289 + ID_B1 SINE B4 109 184 -40 3 1692 398 176 48 16 chr6 145129758 145130007 -4387030 + GA-rich Low_complexity Low_complexity 1 257 0 3 1692 247 181 28 28 chr6 145130098 145130206 -4386831 + GA-rich Low_complexity Low_complexity 3 110 0 3 1692 292 213 5 0 chr6 145131303 145131366 -4385671 + B1F SINE Alu 1 64 -85 3 1692 256 284 11 86 chr6 145131366 145131420 -4385617 + B4A SINE B4 91 190 -102 3 1692 23 33 0 0 chr6 145131514 145131544 -4385493 + AT_rich Low_complexity Low_complexity 1 30 0 3 1692 810 0 0 0 chr6 145132049 145132139 -4384898 + (TG)n Simple_repeat Simple_repeat 2 91 0 3 1692 22 0 0 0 chr6 145132287 145132309 -4384728 + AT_rich Low_complexity Low_complexity 1 22 0 3 1692 249 308 145 0 chr6 145132587 145132704 -4384333 + B1F2 SINE Alu 4 137 -12 3 1692 269 0 115 0 chr6 145132817 145132878 -4384159 + (CAGG)n Simple_repeat Simple_repeat 4 71 0 3 1692 618 14 0 0 chr6 145132997 145133068 -4383969 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 3 1692 27 29 0 0 chr6 145133131 145133165 -4383872 + AT_rich Low_complexity Low_complexity 1 34 0 3 1692 897 203 73 15 chr6 145133356 145133561 -4383476 + ID_B1 SINE B4 8 224 0 3 1692 1253 98 0 11 chr6 145133867 145134042 -4382995 + B2_Mm2 SINE B2 2 174 -21 3 1692 195 100 0 0 chr6 145134558 145134588 -4382449 + (CAG)n Simple_repeat Simple_repeat 1 30 0 3 1692 934 210 40 5 chr6 145134782 145134983 -4382054 + ID_B1 SINE B4 8 215 -9 3 1692 651 26 0 0 chr6 145135163 145135240 -4381797 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1692 283 296 12 0 chr6 145135373 145135454 -4381583 - ID4_ SINE ID 0 83 2 3 1692 54 40 0 0 chr6 145135666 145135741 -4381296 + AT_rich Low_complexity Low_complexity 1 75 0 3 1692 661 302 63 28 chr6 145135886 145136138 -4380899 + MTEa LTR MaLR 114 374 -5 3 1692 1204 282 159 42 chr6 145136276 145136486 -4380551 + MTEa-int LTR MaLR 27 243 -1337 3 1692 708 12 0 0 chr6 145136486 145136567 -4380470 + (GGA)n Simple_repeat Simple_repeat 2 82 0 3 1692 1204 282 159 42 chr6 145136567 145136923 -4380114 + MTEa-int LTR MaLR 244 659 -921 3 1692 435 275 57 23 chr6 145137463 145137638 -4379399 + B3 SINE B2 10 190 -26 3 1692 505 172 23 0 chr6 145138254 145138341 -4378696 - PB1D9 SINE Alu -1 119 31 3 1692 492 275 99 21 chr6 145138643 145138784 -4378253 - RSINE1 SINE B4 0 165 14 3 1692 335 254 149 35 chr6 145139160 145139172 -4377865 + B4 SINE B4 79 103 -189 3 1692 679 172 92 15 chr6 145139172 145139302 -4377735 + B1_Mur1 SINE Alu 3 142 -7 3 1692 516 32 0 0 chr6 145139324 145139386 -4377651 + (TAA)n Simple_repeat Simple_repeat 2 63 0 3 1692 376 270 22 0 chr6 145139734 145139823 -4377214 + B1F SINE Alu 3 93 -56 3 1692 212 59 29 0 chr6 145139834 145139868 -4377169 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 3 1692 305 152 21 160 chr6 145140983 145141077 -4375960 + B1F1 SINE Alu 1 81 -68 3 1692 482 336 74 5 chr6 145141560 145141775 -4375262 + B4A SINE B4 1 230 -62 3 1692 732 336 137 16 chr6 145143607 145144051 -4372986 + MER21B LTR ERV1 276 773 -90 3 1692 241 198 25 0 chr6 145144141 145144222 -4372815 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 1692 432 158 0 0 chr6 145144954 145145030 -4372007 + GA-rich Low_complexity Low_complexity 2 77 0 3 1692 762 209 27 0 chr6 145145568 145145716 -4371321 - RSINE1 SINE B4 -12 153 2 3 1692 541 202 109 0 chr6 145145873 145145992 -4371045 - B1_Mur2 SINE Alu -6 143 12 3 1692 256 301 60 97 chr6 145145901 145146118 -4370919 - MT2B LTR ERVL -336 265 57 3 1692 462 18 0 0 chr6 145146339 145146394 -4370643 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1692 467 314 96 44 chr6 145146397 145146667 -4370370 - B4A SINE B4 -8 284 1 3 1692 528 140 0 0 chr6 145146837 145146944 -4370093 + (CA)n Simple_repeat Simple_repeat 1 107 0 3 1692 295 271 128 34 chr6 145147152 145147301 -4369736 - MER57A-int LTR ERV1 -1915 4272 4110 3 1692 1207 285 133 75 chr6 145147662 145148391 -4368646 - Tigger1 DNA MER2_type -1547 871 101 3 1692 225 342 0 0 chr6 145148421 145148497 -4368540 - Tigger1 DNA MER2_type -2275 143 68 3 1692 619 223 100 77 chr6 145148720 145148890 -4368147 - B3A SINE B2 -22 176 3 3 1692 248 282 115 0 chr6 145149247 145149325 -4367712 + Charlie1a DNA MER1_type 127 213 -1242 3 1692 569 222 78 16 chr6 145149724 145149852 -4367185 - B1_Mur3 SINE Alu -13 136 1 3 1692 563 227 0 26 chr6 145149863 145149976 -4367061 - PB1D9 SINE Alu -5 115 6 3 1692 366 242 189 55 chr6 145149976 145149989 -4367048 - ID_B1 SINE B4 -4 219 77 3 1692 245 308 65 0 chr6 145149985 145150092 -4366945 + Charlie1a DNA MER1_type 739 852 -603 3 1692 373 239 87 0 chr6 145150188 145150280 -4366757 + PB1 SINE Alu 21 120 -7 3 1692 238 284 54 81 chr6 145150331 145150442 -4366595 + Charlie1a DNA MER1_type 959 1066 -389 3 1692 334 228 0 19 chr6 145150442 145150545 -4366492 + (TG)n Simple_repeat Simple_repeat 2 102 0 3 1692 689 268 97 47 chr6 145150546 145150824 -4366213 - B4A SINE B4 0 292 1 3 1692 361 338 73 0 chr6 145150839 145150975 -4366062 + Charlie1a DNA MER1_type 1055 1200 -255 3 1692 932 170 14 0 chr6 145150975 145151122 -4365915 + B1_Mur2 SINE Alu 1 149 0 3 1692 876 167 21 0 chr6 145151124 145151268 -4365769 + B1_Mur4 SINE Alu 4 150 0 3 1692 512 241 17 0 chr6 145151845 145151961 -4365076 + B3 SINE B2 99 216 0 3 1692 551 195 22 131 chr6 145151988 145152171 -4364866 + RSINE1 SINE B4 3 165 0 3 1692 1020 182 68 0 chr6 145152380 145152572 -4364465 + B3 SINE B2 10 214 -2 3 1692 519 266 34 102 chr6 145153024 145153229 -4363808 + B3A SINE B2 8 198 0 3 1692 207 0 0 0 chr6 145153478 145153501 -4363536 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1692 532 261 161 3 chr6 145153928 145154114 -4362923 + B3A SINE B2 4 216 0 3 1692 215 277 8 158 chr6 145154794 145154878 -4362159 - L2c LINE L2 -3 3384 3319 3 1692 356 232 0 14 chr6 145154878 145154948 -4362089 + ID4_ SINE ID 2 70 -13 3 1692 215 277 8 158 chr6 145154948 145154983 -4362054 - L2c LINE L2 -69 3318 3283 3 1692 700 279 0 6 chr6 145155000 145155159 -4361878 + RSINE1 SINE B4 4 161 -4 3 1692 292 282 100 0 chr6 145155259 145155369 -4361668 - MER2 DNA MER2_type -26 319 199 3 1692 699 168 234 0 chr6 145155549 145155716 -4361321 - B3 SINE B2 -10 206 1 3 1692 288 0 0 0 chr6 145155723 145155755 -4361282 + (TTG)n Simple_repeat Simple_repeat 3 34 0 3 1692 277 274 167 0 chr6 145155760 145155844 -4361193 - ID_B1 SINE B4 -50 174 77 3 1692 400 283 0 52 chr6 145156239 145156336 -4360701 - PB1D10 SINE Alu -18 99 8 3 1692 242 324 10 19 chr6 145157040 145157144 -4359893 + L1MD3 LINE L1 7893 7995 0 3 1692 758 333 20 88 chr6 145158178 145158576 -4358461 + MLT1B LTR MaLR 7 377 -13 3 1692 311 271 31 0 chr6 145159813 145159909 -4357128 - PB1D7 SINE Alu -20 100 2 3 1692 226 222 0 113 chr6 145161875 145161946 -4355091 - PB1D10 SINE Alu -14 103 41 3 1692 525 295 57 48 chr6 145162602 145162614 -4354423 - CYRA11_Mm Unknown Y-chromosome -225 392 302 3 1692 991 209 65 0 chr6 145162614 145162815 -4354222 + URR1A DNA MER1_type 7 220 -6 3 1692 525 295 57 48 chr6 145162815 145162830 -4354207 - CYRA11_Mm Unknown Y-chromosome -225 301 163 3 1692 1368 68 11 17 chr6 145164877 145165056 -4351981 + B2_Mm2 SINE B2 3 180 -15 3 1692 250 260 37 49 chr6 145165121 145165202 -4351835 + ID2 SINE ID 3 82 -1 3 1692 228 333 62 41 chr6 145165202 145165218 -4351819 + ID_B1 SINE B4 3 101 -123 3 1692 270 0 0 0 chr6 145165453 145165483 -4351554 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 1692 230 116 23 0 chr6 145166096 145166139 -4350898 + (TATG)n Simple_repeat Simple_repeat 4 47 0 3 1692 206 353 59 0 chr6 145166956 145167024 -4350013 + L2a LINE L2 3354 3425 -1 3 1692 30 0 0 0 chr6 145167988 145168018 -4349019 + AT_rich Low_complexity Low_complexity 1 30 0 3 1692 37 0 0 0 chr6 145169441 145169478 -4347559 + AT_rich Low_complexity Low_complexity 1 37 0 3 1692 573 202 92 8 chr6 145169609 145169739 -4347298 - B3 SINE B2 -6 210 70 3 1692 21 0 0 0 chr6 145171106 145171127 -4345910 + GC_rich Low_complexity Low_complexity 1 21 0 3 1692 481 298 113 18 chr6 145171141 145171363 -4345674 - B4A SINE B4 -19 273 31 3 1692 437 280 103 0 chr6 145171532 145171639 -4345398 - RSINE1 SINE B4 -10 155 38 3 1692 243 0 0 0 chr6 145173260 145173287 -4343750 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 1692 264 30 0 0 chr6 145173823 145173856 -4343181 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1692 690 208 30 8 chr6 145174460 145174591 -4342446 - B3 SINE B2 -8 208 75 3 1692 30 89 0 0 chr6 145175251 145175330 -4341707 + AT_rich Low_complexity Low_complexity 1 79 0 3 1692 182 37 37 0 chr6 145175363 145175390 -4341647 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1692 377 289 87 7 chr6 145175390 145175540 -4341497 - B3 SINE B2 -54 162 1 4 1692 26 50 0 0 chr6 145176266 145176306 -4340731 + AT_rich Low_complexity Low_complexity 1 40 0 4 1692 454 265 8 33 chr6 145177561 145177682 -4339355 + PB1 SINE Alu 1 118 -9 4 1692 237 289 13 13 chr6 145177951 145178028 -4339009 + B4 SINE B4 2 78 -214 4 1692 1270 42 0 0 chr6 145178428 145178572 -4338465 + B1_Mus1 SINE Alu 5 148 0 4 1692 25 0 0 0 chr6 145178642 145178667 -4338370 + AT_rich Low_complexity Low_complexity 1 25 0 4 1692 496 257 86 0 chr6 145178922 145179027 -4338010 + ID_B1 SINE B4 82 195 -29 4 1692 238 198 205 8 chr6 145178944 145179061 -4337976 - YREP_Mm Unknown Unknown -1518 294 155 4 1692 339 25 0 0 chr6 145179095 145179135 -4337902 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1692 255 317 38 38 chr6 145179387 145179492 -4337545 + MER5A1 DNA MER1_type 61 165 -1 4 1692 290 324 29 0 chr6 145180210 145180312 -4336725 + PB1D10 SINE Alu 3 107 -10 4 1692 817 214 7 0 chr6 145181088 145181228 -4335809 + B1_Mur1 SINE Alu 4 144 -5 4 1692 446 328 155 24 chr6 145181282 145181573 -4335464 - MER44A DNA MER2_type 0 339 11 4 1692 583 287 39 39 chr6 145181647 145181828 -4335209 - B3A SINE B2 -16 182 2 4 1692 219 36 0 0 chr6 145182328 145182356 -4334681 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1692 463 176 234 7 chr6 145183005 145183159 -4333878 + L1MB4 LINE L1 5283 5471 -713 4 1692 392 231 31 35 chr6 145183164 145183270 -4333767 + PB1D9 SINE Alu 33 149 0 4 1692 607 259 197 19 chr6 145183354 145183618 -4333419 + L1MB4 LINE L1 5826 6136 -44 4 1692 447 19 0 0 chr6 145183698 145183750 -4333287 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1692 22 56 0 0 chr6 145183772 145183808 -4333229 + AT_rich Low_complexity Low_complexity 1 36 0 4 1692 244 224 16 49 chr6 145183874 145183935 -4333102 - RSINE1 SINE B4 -103 62 4 4 1692 326 310 17 50 chr6 145184019 145184138 -4332899 - ID2 SINE ID -37 115 1 4 1692 483 325 33 13 chr6 145184653 145184806 -4332231 + RSINE1 SINE B4 3 158 -7 4 1692 228 67 0 0 chr6 145186376 145186406 -4330631 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1692 1254 54 0 0 chr6 145186406 145186554 -4330483 - B1_Mus1 SINE Alu 0 148 1 4 1692 264 316 8 47 chr6 145186854 145186976 -4330061 + B1F SINE Alu 1 149 0 4 1692 467 190 92 76 chr6 145187911 145188042 -4328995 + ID_B1 SINE B4 86 218 -6 4 1692 465 223 26 40 chr6 145188387 145188514 -4328523 - B1_Mus1 SINE Alu -1 116 1 4 1692 190 0 67 0 chr6 145188521 145188551 -4328486 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 1692 533 257 18 0 chr6 145188551 145188664 -4328373 - PB1D10 SINE Alu -2 115 1 4 1692 1328 241 63 45 chr6 145189583 145189811 -4327226 + L1MB7 LINE L1 5649 5885 -299 4 1692 702 171 130 15 chr6 145189811 145189942 -4327095 + B1_Mus1 SINE Alu 2 147 -1 4 1692 1328 241 63 45 chr6 145189942 145190221 -4326816 + L1MB7 LINE L1 5886 6165 -19 4 1692 363 256 124 0 chr6 145192158 145192279 -4324758 - B1F2 SINE Alu -13 136 1 4 1692 533 287 52 38 chr6 145193365 145193575 -4323462 + ID_B1 SINE B4 6 218 -6 4 1692 21 0 0 0 chr6 145193709 145193730 -4323307 + AT_rich Low_complexity Low_complexity 1 21 0 4 1692 1268 55 0 0 chr6 145193779 145193925 -4323112 + B1_Mus2 SINE Alu 2 147 0 4 1692 191 103 26 0 chr6 145193945 145193984 -4323053 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 1692 1375 98 43 0 chr6 145194221 145194405 -4322632 + B2_Mm2 SINE B2 1 192 -3 4 1692 1135 64 25 0 chr6 145194405 145194562 -4322475 + B2_Mm2 SINE B2 29 189 -6 4 1692 777 224 0 33 chr6 145194670 145194822 -4322215 + B1_Mur1 SINE Alu 3 149 0 4 1692 21 36 0 0 chr6 145195119 145195147 -4321890 + AT_rich Low_complexity Low_complexity 1 28 0 4 1692 183 230 35 139 chr6 145195782 145195868 -4321169 - L2 LINE L2 -1503 1916 1840 4 1692 674 228 148 65 chr6 145196868 145197239 -4319798 + Charlie1b DNA MER1_type 110 511 -12 4 1692 27 62 0 0 chr6 145198361 145198409 -4318628 + GC_rich Low_complexity Low_complexity 1 48 0 4 1692 256 215 14 56 chr6 145198454 145198597 -4318440 + (CCGCG)n Simple_repeat Simple_repeat 1 137 0 4 1692 211 159 0 42 chr6 145198678 145198750 -4318287 + (CCG)n Simple_repeat Simple_repeat 2 70 0 4 1692 240 35 0 0 chr6 145198857 145198886 -4318151 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 4 1692 22 0 0 0 chr6 145198939 145198961 -4318076 + GC_rich Low_complexity Low_complexity 1 22 0 4 1692 29 0 0 0 chr6 145199075 145199104 -4317933 + GC_rich Low_complexity Low_complexity 1 29 0 4 1692 272 141 0 50 chr6 145199175 145199252 -4317785 - PB1 SINE Alu -2 125 53 4 1692 383 289 68 73 chr6 145199628 145199833 -4317204 - MIRb SINE MIR -24 244 41 4 1692 449 309 57 84 chr6 145200034 145200196 -4316841 + L2a LINE L2 3113 3281 -145 4 1692 501 198 33 49 chr6 145200196 145200318 -4316719 - PB1D9 SINE Alu 0 120 1 4 1692 449 309 57 84 chr6 145200318 145200452 -4316585 + L2a LINE L2 3282 3401 -25 4 1692 180 0 0 0 chr6 145200743 145200763 -4316274 + (TC)n Simple_repeat Simple_repeat 1 20 0 4 1692 1196 269 90 40 chr6 145200934 145201333 -4315704 - MTD LTR MaLR 0 419 1 4 1692 684 276 74 83 chr6 145203056 145203368 -4313669 + ORR1E LTR MaLR 3 311 -48 4 1692 513 0 0 0 chr6 145203570 145203627 -4313410 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1692 484 248 105 0 chr6 145203629 145203762 -4313275 - B3A SINE B2 -51 147 1 4 1692 264 111 0 0 chr6 145204260 145204305 -4312732 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 4 1692 216 97 0 0 chr6 145205524 145205555 -4311482 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 4 1692 1189 74 0 51 chr6 145205830 145205986 -4311051 + B1_Mus1 SINE Alu 1 148 0 4 1692 186 133 0 0 chr6 145205988 145206018 -4311019 + (ATG)n Simple_repeat Simple_repeat 1 30 0 4 1692 1602 47 11 0 chr6 145206527 145206717 -4310320 + B2_Mm1t SINE B2 2 193 0 4 1692 573 248 72 7 chr6 145207082 145207220 -4309817 - RSINE1 SINE B4 -8 157 11 4 1692 588 232 132 14 chr6 145207937 145208081 -4308956 - RSINE1 SINE B4 -1 164 4 4 1692 956 54 138 0 chr6 145208108 145208238 -4308799 - B1_Mus1 SINE Alu 0 148 1 4 1692 369 281 84 84 chr6 145208249 145208498 -4308539 - L1MB8 LINE L1 0 6178 5930 4 1692 730 339 64 29 chr6 145208492 145209215 -4307822 - L1MA6 LINE L1 -225 6075 5328 4 1692 273 274 62 31 chr6 145209216 145209344 -4307693 - Charlie1b DNA MER1_type -248 275 144 4 1692 1414 104 124 0 chr6 145209791 145209992 -4307045 - URR1A DNA MER1_type 0 226 1 4 1692 455 202 0 9 chr6 145210196 145210311 -4306726 + CT-rich Low_complexity Low_complexity 3 116 0 4 1692 217 316 53 135 chr6 145210594 145210934 -4306103 + L2a LINE L2 3037 3348 -78 4 1692 288 388 0 6 chr6 145211572 145211926 -4305111 + (TG)n Simple_repeat Simple_repeat 1 351 0 4 1692 805 217 61 45 chr6 145212140 145212338 -4304699 - B3 SINE B2 -13 203 3 4 1692 440 265 82 15 chr6 145212766 145212777 -4304260 + B4 SINE B4 76 123 -169 4 1692 759 57 57 0 chr6 145212777 145212882 -4304155 + B1_Mus2 SINE Alu 2 112 -35 4 1692 440 265 82 15 chr6 145212882 145212900 -4304137 + B4 SINE B4 124 218 -74 4 1692 1114 241 114 32 chr6 145213663 145214006 -4303031 - MTEa LTR MaLR -8 371 1 4 1692 646 292 32 5 chr6 145216961 145217147 -4299890 - ID_B1 SINE B4 -9 215 25 4 1692 189 74 0 0 chr6 145217179 145217206 -4299831 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 4 1692 24 32 0 0 chr6 145217262 145217293 -4299744 + AT_rich Low_complexity Low_complexity 1 31 0 4 1692 238 269 75 42 chr6 145217721 145217841 -4299196 + MLT1A1 LTR MaLR 269 392 -16 4 1692 347 303 83 0 chr6 145218388 145218497 -4298540 - PB1D7 SINE Alu -1 119 2 4 1692 1804 263 122 8 chr6 145218576 145219190 -4297847 + Lx8 LINE L1 6495 7178 -295 4 1692 840 233 100 65 chr6 145219463 145219784 -4297253 + Lx8 LINE L1 7139 7470 -3 4 1692 668 304 107 24 chr6 145220116 145220369 -4296668 + B4A SINE B4 1 274 -18 4 1692 254 269 180 81 chr6 145220246 145220541 -4296496 - RLTR21 LTR ERVK -152 1420 1097 4 1692 906 252 59 65 chr6 145221328 145221684 -4295353 + MTEa LTR MaLR 2 355 -24 4 1692 724 281 52 44 chr6 145222063 145222335 -4294702 - B4A SINE B4 -18 274 1 4 1692 347 272 0 24 chr6 145222411 145222494 -4294543 + ID4_ SINE ID 3 83 0 4 1692 1151 68 0 0 chr6 145224096 145224242 -4292795 + B1_Mus1 SINE Alu 3 148 0 4 1692 216 0 0 0 chr6 145226119 145226143 -4290894 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1692 740 330 46 102 chr6 145226519 145226843 -4290194 - ORR1E LTR MaLR -53 306 1 4 1692 496 227 10 0 chr6 145227239 145227336 -4289701 + B3 SINE B2 2 99 -117 4 1692 579 326 56 15 chr6 145227391 145227587 -4289450 - MLT1F LTR MaLR -182 366 163 4 1693 670 276 101 9 chr6 145227909 145228136 -4288901 + B4A SINE B4 44 291 -1 4 1693 237 33 0 0 chr6 145228139 145228169 -4288868 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1693 631 114 41 44 chr6 145228954 145229249 -4287788 + CT-rich Low_complexity Low_complexity 1 293 0 4 1693 822 238 38 14 chr6 145230077 145230286 -4286751 - B3 SINE B2 -2 214 1 4 1693 697 185 1 97 chr6 145230500 145230703 -4286334 - ORR1D1 LTR MaLR -209 175 5 4 1693 250 306 0 14 chr6 145230706 145230723 -4286314 - BC1_Mm scRNA scRNA -67 85 14 4 1693 325 214 0 0 chr6 145230723 145230779 -4286258 - B4 SINE B4 -223 69 14 5 1693 477 0 0 0 chr6 145230786 145230839 -4286198 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1693 343 360 62 44 chr6 145231063 145231290 -4285747 + L1M5 LINE L1 4783 5013 -1133 5 1693 829 279 135 22 chr6 145231315 145231665 -4285372 + MTD LTR MaLR 18 421 0 5 1693 442 308 98 36 chr6 145231671 145231947 -4285090 + L1M5 LINE L1 5031 5323 -823 5 1693 288 0 0 0 chr6 145231947 145231979 -4285058 + (TAA)n Simple_repeat Simple_repeat 2 33 0 5 1693 360 243 0 0 chr6 145232094 145232205 -4284832 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1693 547 178 6 19 chr6 145232217 145232377 -4284660 + (TA)n Simple_repeat Simple_repeat 1 158 0 5 1693 702 267 121 14 chr6 145232406 145232687 -4284350 + L1M5 LINE L1 5512 5822 -342 5 1693 596 244 116 24 chr6 145232753 145232917 -4284120 - B3A SINE B2 -17 181 3 5 1693 692 258 29 30 chr6 145233098 145233393 -4283644 - MTEb LTR MaLR 0 379 2 5 1693 3518 112 137 48 chr6 145233612 145234306 -4282731 + RMER6A LTR ERVK 1 756 0 5 1693 460 237 85 43 chr6 145235348 145235408 -4281629 - B1F SINE Alu 0 149 84 5 1693 1459 235 81 20 chr6 145235408 145235803 -4281234 + MTD LTR MaLR 1 419 0 5 1693 460 237 85 43 chr6 145235803 145235883 -4281154 - B1F SINE Alu -66 83 3 5 1693 256 246 56 28 chr6 145235959 145236030 -4281007 + MLT1L LTR MaLR 9 81 -529 5 1693 622 137 203 30 chr6 145236575 145236777 -4280260 - 7SK RNA RNA -94 237 1 5 1693 440 159 14 14 chr6 145236817 145236887 -4280150 - RSINE1 SINE B4 -91 74 5 5 1693 32 95 0 0 chr6 145236922 145237017 -4280020 + AT_rich Low_complexity Low_complexity 1 95 0 5 1693 245 70 23 0 chr6 145237021 145237064 -4279973 - L1_Mus2 LINE L1 -1 6565 6522 5 1693 545 43 0 0 chr6 145237077 145237146 -4279891 + L1_Mus2 LINE L1 6262 6330 -236 5 1693 234 120 52 26 chr6 145237146 145237223 -4279814 + (TA)n Simple_repeat Simple_repeat 2 80 0 5 1693 604 255 45 55 chr6 145237369 145237589 -4279448 - ID_B1 SINE B4 -6 218 1 5 1693 1071 237 159 39 chr6 145238202 145238536 -4278501 - MTE2a LTR MaLR 0 379 6 5 1693 596 285 136 88 chr6 145238757 145238817 -4278220 + B4 SINE B4 7 54 -238 5 1693 1173 71 0 0 chr6 145238817 145238957 -4278080 + B1_Mm SINE Alu 2 141 -6 5 1693 189 0 0 0 chr6 145238961 145238982 -4278055 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 5 1693 596 285 136 88 chr6 145238982 145239189 -4277848 + B4 SINE B4 55 288 -4 5 1693 826 179 21 0 chr6 145239244 145239389 -4277648 + ORR1D1 LTR MaLR 227 374 0 5 1693 584 250 14 35 chr6 145240380 145240525 -4276512 + ID_B1 SINE B4 81 222 -2 5 1693 495 301 12 142 chr6 145240528 145240768 -4276269 + B4A SINE B4 3 211 -81 5 1693 279 157 0 0 chr6 145240768 145240819 -4276218 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1693 495 0 0 0 chr6 145240848 145240903 -4276134 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 5 1693 1440 228 33 107 chr6 145241426 145241912 -4275125 + RLTR12B LTR ERVK 74 523 -5 5 1693 230 286 57 0 chr6 145242027 145242097 -4274940 - ID4 SINE ID -9 74 1 5 1693 343 159 24 24 chr6 145242251 145242335 -4274702 + G-rich Low_complexity Low_complexity 5 88 0 5 1693 458 313 50 20 chr6 145242358 145242560 -4274477 + MTEb LTR MaLR 168 375 -4 5 1693 591 268 29 0 chr6 145242897 145243035 -4274002 - B3A SINE B2 -55 143 2 5 1693 512 279 44 0 chr6 145243285 145243421 -4273616 - RSINE1 SINE B4 -21 144 3 5 1693 333 0 0 0 chr6 145244633 145244670 -4272367 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1693 255 206 38 88 chr6 145244705 145244785 -4272252 - RLTR16 LTR ERVK 0 505 430 5 1693 1416 202 93 57 chr6 145244863 145245383 -4271654 - RLTR16 LTR ERVK -18 550 1 5 1693 444 122 0 26 chr6 145245477 145245553 -4271484 - MTC LTR MaLR 0 419 346 5 1693 773 175 84 0 chr6 145245553 145245696 -4271341 - MTC LTR MaLR -266 155 1 5 1693 198 0 0 0 chr6 145245946 145245968 -4271069 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1693 282 29 0 0 chr6 145245970 145246005 -4271032 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 5 1693 870 186 30 113 chr6 145247077 145247307 -4269730 - RMER1C Other Other -5 1337 1127 5 1693 529 313 7 0 chr6 145248069 145248219 -4268818 + RSINE1 SINE B4 13 163 -2 5 1693 324 70 0 0 chr6 145248240 145248283 -4268754 + (GGGGA)n Simple_repeat Simple_repeat 5 47 0 5 1693 380 312 73 9 chr6 145248538 145248648 -4268389 - PB1D7 SINE Alu 0 120 4 5 1693 586 244 96 7 chr6 145249230 145249366 -4267671 + B1F2 SINE Alu 1 148 -1 5 1693 553 244 0 0 chr6 145249369 145249484 -4267553 + PB1D9 SINE Alu 1 115 -5 5 1693 818 232 6 25 chr6 145249532 145249691 -4267346 + RSINE1 SINE B4 2 157 -8 5 1693 359 295 15 9 chr6 145249840 145249958 -4267079 - PB1D7 SINE Alu 0 127 7 5 1693 715 291 23 134 chr6 145250157 145250499 -4266538 - MTEa LTR MaLR -74 305 2 5 1693 279 294 22 118 chr6 145250820 145250955 -4266082 + PB1 SINE Alu 6 127 0 5 1693 968 253 96 28 chr6 145250980 145251334 -4265703 - MTE2b LTR MaLR -1 378 1 5 1693 239 179 0 0 chr6 145251865 145251904 -4265133 - B1_Mur4 SINE Alu -110 40 2 5 1693 356 273 12 62 chr6 145252735 145252895 -4264142 - RSINE1 SINE B4 -12 153 2 5 1693 204 125 0 0 chr6 145253125 145253157 -4263880 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1693 22 35 0 0 chr6 145253231 145253260 -4263777 + AT_rich Low_complexity Low_complexity 1 29 0 5 1693 764 0 0 0 chr6 145253261 145253342 -4263695 - L1_Mus2 LINE L1 -338 6228 6148 5 1693 2861 49 0 3 chr6 145253343 145253689 -4263348 + L1_Mus2 LINE L1 6222 6566 0 5 1693 1726 26 0 0 chr6 145253921 145254113 -4262924 + B2_Mm1t SINE B2 1 192 -1 5 1693 324 287 0 0 chr6 145254188 145254345 -4262692 + (TG)n Simple_repeat Simple_repeat 1 157 0 5 1693 354 303 21 46 chr6 145254364 145254558 -4262479 + RMER12 LTR ERVK 770 958 -364 5 1693 381 297 54 9 chr6 145254691 145254803 -4262234 + PB1D10 SINE Alu 1 117 0 5 1693 225 154 0 0 chr6 145254841 145254880 -4262157 + (CAT)n Simple_repeat Simple_repeat 1 39 0 5 1693 241 276 0 0 chr6 145255044 145255102 -4261935 - B1F SINE Alu -91 58 1 5 1693 261 0 0 0 chr6 145255174 145255203 -4261834 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1693 612 0 0 0 chr6 145255588 145255656 -4261381 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1693 496 254 223 6 chr6 145255673 145255839 -4261198 - B4 SINE B4 -90 202 1 5 1693 886 293 57 20 chr6 145255874 145256278 -4260759 + L1MA4 LINE L1 5491 5909 -391 5 1693 231 149 79 26 chr6 145256284 145256360 -4260677 + (TATAA)n Simple_repeat Simple_repeat 4 83 0 5 1693 1736 105 378 22 chr6 145256363 145256630 -4260407 - MTC LTR MaLR -8 413 55 5 1693 1848 99 106 26 chr6 145256630 145256932 -4260105 + ORR1A3 LTR MaLR 1 326 0 5 1693 410 123 0 71 chr6 145256932 145256986 -4260051 - MTC LTR MaLR -367 54 1 5 1693 467 277 80 45 chr6 145258188 145258497 -4258540 + MTD LTR MaLR 7 377 -2 5 1693 242 333 14 0 chr6 145258768 145258837 -4258200 + MIRb SINE MIR 124 193 -75 5 1693 1288 233 39 30 chr6 145259163 145259499 -4257538 + MTEb LTR MaLR 3 341 -38 5 1693 1200 334 48 48 chr6 145259925 145260143 -4256894 + L1_Mur3 LINE L1 4895 5115 -765 5 1693 441 0 0 0 chr6 145260143 145260192 -4256845 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 5 1693 1200 334 48 48 chr6 145260192 145260354 -4256683 + L1_Mur3 LINE L1 5116 5290 -590 5 1693 599 78 0 11 chr6 145260354 145260445 -4256592 + (CA)n Simple_repeat Simple_repeat 1 90 0 5 1693 1200 334 48 48 chr6 145260445 145261036 -4256001 + L1_Mur3 LINE L1 5291 5867 -13 5 1693 456 221 14 23 chr6 145261881 145261995 -4255042 - B1F SINE Alu -1 116 10 5 1693 710 200 97 34 chr6 145262039 145262215 -4254822 + B2_Mm2 SINE B2 2 188 -7 5 1693 536 236 27 20 chr6 145262728 145262875 -4254162 + Lx8 LINE L1 7146 7293 -180 5 1693 260 301 61 17 chr6 145262976 145263091 -4253946 + RMER1C Other Other 1223 1342 0 5 1693 625 185 146 0 chr6 145263247 145263398 -4253639 + MTD LTR MaLR 231 403 -16 5 1693 248 91 23 0 chr6 145263582 145263626 -4253411 + (CCCCCT)n Simple_repeat Simple_repeat 6 50 0 5 1693 242 315 172 8 chr6 145265330 145265458 -4251579 - L2a LINE L2 -6 3420 3272 5 1693 2333 78 18 59 chr6 145265490 145265831 -4251206 + ORR1A2 LTR MaLR 1 327 0 5 1693 227 305 107 31 chr6 145265949 145266108 -4250929 - L2a LINE L2 -197 3229 3059 5 1693 220 257 103 56 chr6 145266110 145266217 -4250820 + B4A SINE B4 34 145 -147 5 1693 324 146 0 0 chr6 145266183 145266231 -4250806 + B1F SINE Alu 27 74 -75 5 1693 1909 153 16 134 chr6 145266737 145267176 -4249861 - RMER4A LTR ERVK 0 466 80 5 1693 383 208 0 0 chr6 145267176 145267248 -4249789 + MurERV4-int LTR ERVK 1866 1937 -3323 5 1693 274 0 0 0 chr6 145267574 145267609 -4249428 + RMER4A LTR ERVK 1 35 -431 5 1693 563 291 8 0 chr6 145267945 145268072 -4248965 - B1F SINE Alu -6 143 16 5 1693 434 324 14 49 chr6 145268072 145268088 -4248949 - ID_B1 SINE B4 -6 218 81 5 1693 660 256 97 69 chr6 145268270 145268513 -4248524 + B4 SINE B4 61 278 -14 5 1693 381 43 0 0 chr6 145269095 145269142 -4247895 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 5 1693 404 273 50 0 chr6 145269506 145269605 -4247432 + RSINE1 SINE B4 48 151 -14 5 1693 849 103 333 0 chr6 145269732 145269897 -4247140 + URR1B DNA MER1_type 1 220 -5 5 1693 470 278 0 9 chr6 145269929 145270038 -4246999 + B1_Mur2 SINE Alu 41 148 -1 5 1693 531 0 0 0 chr6 145270168 145270227 -4246810 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 1693 791 86 8 0 chr6 145270683 145270800 -4246237 + (GA)n Simple_repeat Simple_repeat 1 118 0 5 1693 839 257 29 0 chr6 145270810 145270985 -4246052 + ID_B1 SINE B4 40 219 -5 5 1693 255 230 189 0 chr6 145271452 145271526 -4245511 + RMER21A LTR ERV1 597 684 -263 5 1693 865 171 6 6 chr6 145271611 145271787 -4245250 + CT-rich Low_complexity Low_complexity 2 177 0 5 1693 542 287 149 21 chr6 145272039 145272327 -4244710 + MTEa LTR MaLR 9 333 -46 6 1693 229 366 0 14 chr6 145274190 145274262 -4242775 - RSINE1 SINE B4 -93 72 2 6 1693 619 260 8 0 chr6 145276209 145276336 -4240701 - ID_B1 SINE B4 -13 211 84 6 1693 254 29 29 0 chr6 145276740 145276775 -4240262 + (CAA)n Simple_repeat Simple_repeat 2 37 0 6 1693 1018 216 9 32 chr6 145276852 145277072 -4239965 + ID_B1 SINE B4 1 215 -9 6 1693 201 74 0 0 chr6 145277072 145277099 -4239938 + (ATG)n Simple_repeat Simple_repeat 2 28 0 6 1693 226 344 25 108 chr6 145277308 145277549 -4239488 - MLT1K LTR MaLR -182 413 193 6 1693 204 125 0 0 chr6 145277908 145277940 -4239097 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1693 1021 119 6 11 chr6 145278404 145278583 -4238454 + (TATG)n Simple_repeat Simple_repeat 1 178 0 6 1693 238 302 208 0 chr6 145278707 145278813 -4238224 + MLT1F LTR MaLR 194 321 -227 6 1693 435 323 15 8 chr6 145279040 145279174 -4237863 + RSINE1 SINE B4 16 150 -15 6 1693 261 0 0 0 chr6 145279207 145279236 -4237801 + (TAA)n Simple_repeat Simple_repeat 2 30 0 6 1693 354 281 36 126 chr6 145279422 145279589 -4237448 + RSINE1 SINE B4 14 165 0 6 1693 566 233 0 6 chr6 145279589 145279770 -4237267 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1693 593 14 14 0 chr6 145280307 145280381 -4236656 + (CAAAC)n Simple_repeat Simple_repeat 2 76 0 6 1693 978 87 35 0 chr6 145280992 145281165 -4235872 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1693 720 121 40 11 chr6 145281180 145281355 -4235682 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1693 186 43 0 0 chr6 145281422 145281445 -4235592 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1693 597 320 35 4 chr6 145281489 145281721 -4235316 - Lx8 LINE L1 -1598 5875 5637 6 1693 283 266 31 0 chr6 145281980 145282044 -4234993 - ID_B1 SINE B4 -31 193 128 6 1693 315 247 40 27 chr6 145282087 145282162 -4234875 - B4A SINE B4 -3 289 214 6 1693 304 276 251 0 chr6 145282268 145282424 -4234613 - B4A SINE B4 -94 198 4 6 1693 229 283 0 36 chr6 145282648 145282703 -4234334 - ID4_ SINE ID -5 78 26 6 1693 680 251 65 45 chr6 145282820 145283020 -4234017 + ID_B1 SINE B4 4 207 -17 6 1693 194 0 0 37 chr6 145283053 145283080 -4233957 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1693 26 0 0 0 chr6 145283163 145283189 -4233848 + AT_rich Low_complexity Low_complexity 1 26 0 6 1693 822 264 46 26 chr6 145283274 145283468 -4233569 + B3 SINE B2 6 203 -13 6 1693 283 232 96 78 chr6 145283606 145283785 -4233252 - RMER10B LTR ERVL -249 193 18 6 1693 285 260 69 50 chr6 145284215 145284316 -4232721 + B1_Mur4 SINE Alu 1 105 -45 6 1693 227 217 83 0 chr6 145284958 145284970 -4232067 + PB1D9 SINE Alu 56 120 0 6 1693 242 229 0 0 chr6 145284970 145285018 -4232019 + ID_B1 SINE B4 176 223 -1 6 1693 255 329 129 7 chr6 145285078 145285225 -4231812 + B4A SINE B4 1 165 -127 6 1693 361 290 75 0 chr6 145285312 145285419 -4231618 - L2b LINE L2 -13 3362 3248 6 1693 613 272 70 30 chr6 145286104 145286305 -4230732 - ORR1E LTR MaLR -86 273 65 6 1693 230 221 43 75 chr6 145286333 145286426 -4230611 - ORR1E LTR MaLR -205 154 65 6 1693 369 266 86 58 chr6 145286615 145286767 -4230270 - ORR1E LTR MaLR -213 146 8 6 1693 277 230 120 13 chr6 145287994 145288069 -4228968 + B1F SINE Alu 57 139 -10 6 1693 194 136 23 0 chr6 145288106 145288150 -4228887 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 6 1693 357 266 39 77 chr6 145288946 145289101 -4227936 + B1F1 SINE Alu 1 149 0 6 1693 208 195 24 0 chr6 145289101 145289142 -4227895 + GA-rich Low_complexity Low_complexity 3 44 0 6 1693 396 227 25 19 chr6 145289525 145289641 -4227396 + B1F1 SINE Alu 2 120 -27 6 1693 417 248 0 0 chr6 145289641 145289754 -4227283 + (TA)n Simple_repeat Simple_repeat 2 114 0 6 1693 411 265 202 17 chr6 145290880 145291053 -4225984 - B3 SINE B2 -3 213 9 6 1693 2604 218 18 61 chr6 145291152 145291787 -4225250 + Lx9 LINE L1 6797 7418 -226 6 1693 1247 115 5 16 chr6 145291787 145291973 -4225064 - B2_Mm2 SINE B2 -11 184 1 6 1693 2604 218 18 61 chr6 145291973 145292044 -4224993 + Lx9 LINE L1 7419 7473 -171 6 1693 687 141 13 61 chr6 145292044 145292204 -4224833 + ORR1D1 LTR MaLR 1 146 -248 6 1693 331 324 180 10 chr6 145292804 145293010 -4224027 + MLT1B LTR MaLR 70 310 -80 6 1693 473 264 222 0 chr6 145293366 145293510 -4223527 - ID_B1 SINE B4 -46 178 3 6 1693 266 200 0 35 chr6 145293999 145294056 -4222981 + RLTR11A LTR ERVK 7 61 -467 6 1693 343 229 0 14 chr6 145294042 145294113 -4222924 - MTC LTR MaLR -351 70 1 6 1693 227 240 53 123 chr6 145294770 145294884 -4222153 - MTD LTR MaLR -141 278 173 6 1693 2549 208 75 119 chr6 145295255 145296329 -4220708 - RMER1A Other Other 0 1030 4 6 1693 1292 275 41 56 chr6 145296389 145296928 -4220109 - RMER1B Other Other -529 537 7 6 1693 285 103 16 32 chr6 145297218 145297300 -4219737 + ORR1B2 LTR MaLR 41 139 -255 6 1693 477 279 40 54 chr6 145298116 145298264 -4218773 - RSINE1 SINE B4 -6 159 14 6 1693 284 261 214 11 chr6 145298317 145298406 -4218631 + RSINE1 SINE B4 21 127 -38 6 1693 32 57 0 0 chr6 145298474 145298527 -4218510 + AT_rich Low_complexity Low_complexity 1 53 0 6 1693 270 0 0 0 chr6 145298550 145298580 -4218457 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1693 413 279 87 48 chr6 145298746 145298953 -4218084 - B3 SINE B2 -1 215 1 6 1693 277 83 0 62 chr6 145300302 145300366 -4216671 + (CAAAAA)n Simple_repeat Simple_repeat 2 61 0 6 1693 275 273 50 37 chr6 145301103 145301198 -4215839 - B3A SINE B2 -125 91 1 6 1693 873 29 0 0 chr6 145301210 145301314 -4215723 + (TC)n Simple_repeat Simple_repeat 2 105 0 6 1693 741 175 0 0 chr6 145301579 145301750 -4215287 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 1693 252 77 0 0 chr6 145301797 145301836 -4215201 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 6 1693 658 162 6 6 chr6 145301846 145302026 -4215011 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1693 711 200 74 0 chr6 145302407 145302542 -4214495 + B3A SINE B2 2 146 -52 6 1693 393 86 0 0 chr6 145302544 145302602 -4214435 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1693 523 225 100 0 chr6 145302632 145302752 -4214285 - B1_Mur2 SINE Alu -7 142 11 6 1693 232 278 110 9 chr6 145303772 145303881 -4213156 - MLT2B4 LTR ERVL -367 189 70 6 1693 22 56 0 0 chr6 145304127 145304163 -4212874 + AT_rich Low_complexity Low_complexity 1 36 0 6 1693 417 274 92 54 chr6 145304436 145304470 -4212567 - B2_Mm2 SINE B2 -3 192 158 6 1693 201 39 0 0 chr6 145304470 145304496 -4212541 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1693 482 266 111 7 chr6 145304496 145304646 -4212391 - B3 SINE B2 -38 157 1 6 1693 721 204 172 22 chr6 145304720 145304900 -4212137 - B3 SINE B2 -9 207 1 6 1693 1965 46 0 4 chr6 145304984 145305224 -4211813 - MTB LTR MaLR 0 400 162 6 1693 1327 239 247 14 chr6 145305224 145305779 -4211258 - RLTR13D2 LTR ERVK 0 1023 340 6 1693 1095 83 64 0 chr6 145305721 145305878 -4211159 - MTB LTR MaLR -233 167 1 6 1693 655 250 13 13 chr6 145305926 145306076 -4210961 + RSINE1 SINE B4 7 156 -9 6 1693 21 36 0 0 chr6 145306085 145306113 -4210924 + AT_rich Low_complexity Low_complexity 1 28 0 6 1693 207 97 62 31 chr6 145306842 145306906 -4210131 + (CAGA)n Simple_repeat Simple_repeat 2 67 0 6 1693 486 61 0 0 chr6 145306907 145306973 -4210064 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 1693 602 99 33 44 chr6 145306996 145307176 -4209861 + (CAGA)n Simple_repeat Simple_repeat 2 179 0 6 1693 471 35 0 0 chr6 145307194 145307251 -4209786 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1693 666 250 0 0 chr6 145307264 145307396 -4209641 - B3A SINE B2 -65 133 2 6 1693 815 305 47 9 chr6 145307502 145307843 -4209194 - L1MC4 LINE L1 -374 7668 7315 6 1693 216 24 73 0 chr6 145309101 145309142 -4207895 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1693 1122 205 48 37 chr6 145309710 145309979 -4207058 - MTD LTR MaLR -138 281 10 6 1693 641 291 65 18 chr6 145311022 145311239 -4205798 - RCHARR1 DNA MER1_type 0 974 748 6 1693 626 245 106 21 chr6 145311262 145311450 -4205587 - RCHARR1 DNA MER1_type -563 411 208 6 1693 786 248 145 25 chr6 145311458 145311901 -4205136 + RMER5 LTR ERV1 23 517 -17 6 1693 463 320 122 10 chr6 145311890 145312086 -4204951 - RCHARR1 DNA MER1_type -750 224 7 6 1693 918 281 114 79 chr6 145312102 145312810 -4204227 - Ricksha DNA MuDR -972 2274 1542 6 1693 471 18 0 0 chr6 145312835 145312891 -4204146 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1693 527 218 148 15 chr6 145312892 145313027 -4204010 - B3A SINE B2 -44 154 2 6 1693 420 233 86 0 chr6 145313221 145313337 -4203700 - Ricksha DNA MuDR -2071 1175 1050 6 1693 321 253 13 39 chr6 145313516 145313594 -4203443 - MLT2B3 LTR ERVL -84 586 511 6 1693 2205 154 63 73 chr6 145313606 145314032 -4203005 - RLTR23 LTR ERV1 0 430 9 6 1693 292 273 138 59 chr6 145314000 145314152 -4202885 - MLT2B3 LTR ERVL -194 523 360 6 1693 1243 206 132 20 chr6 145314403 145314705 -4202332 + MTD LTR MaLR 5 340 -79 6 1693 1519 175 100 9 chr6 145315807 145316147 -4200890 + RMER1B Other Other 45 415 -651 6 1693 2318 226 94 36 chr6 145316117 145317227 -4199810 + RMER1B Other Other 1 1066 0 6 1693 347 234 26 0 chr6 145318761 145318838 -4198199 - B1F SINE Alu -3 146 68 6 1693 654 249 82 82 chr6 145318877 145319157 -4197880 + RMER5 LTR ERV1 43 322 -212 6 1693 1192 182 49 45 chr6 145319798 145320062 -4196975 - ORR1D1 LTR MaLR -109 265 1 6 1693 246 62 0 0 chr6 145320125 145320157 -4196880 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1693 378 0 0 0 chr6 145320160 145320202 -4196835 + (TTAGGG)n Simple_repeat Simple_repeat 3 44 0 6 1693 377 216 212 20 chr6 145320218 145320317 -4196720 - RSINE1 SINE B4 -36 129 12 6 1693 264 291 68 38 chr6 145320345 145320477 -4196560 + RMER5 LTR ERV1 261 396 -138 6 1693 503 298 10 87 chr6 145320632 145320649 -4196388 - B3A SINE B2 -18 180 164 7 1693 735 12 0 0 chr6 145320649 145320733 -4196304 + (GA)n Simple_repeat Simple_repeat 1 84 0 7 1693 503 298 10 87 chr6 145320733 145320910 -4196127 - B3A SINE B2 -35 163 2 7 1693 231 274 29 88 chr6 145321610 145321678 -4195359 + ID4_ SINE ID 6 69 -14 7 1693 414 214 0 0 chr6 145321886 145322026 -4195011 + (CA)n Simple_repeat Simple_repeat 1 140 0 7 1693 445 222 11 0 chr6 145322043 145322219 -4194818 + (CA)n Simple_repeat Simple_repeat 2 179 0 7 1693 210 325 12 24 chr6 145322632 145322717 -4194320 - MIRb SINE MIR -24 244 161 7 1693 342 0 0 0 chr6 145322885 145322923 -4194114 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1693 481 222 36 18 chr6 145322923 145323033 -4194004 - PB1D7 SINE Alu -3 117 6 7 1693 324 276 50 10 chr6 145322947 145323046 -4193991 - B4A SINE B4 -112 180 78 7 1693 564 286 92 85 chr6 145323243 145323526 -4193511 - MT2A LTR ERVL -4 529 245 7 1693 762 321 153 29 chr6 145324387 145324839 -4192198 + LTR53 LTR ERVL 1 508 -11 7 1693 988 222 30 66 chr6 145324939 145325243 -4191794 + Lx9 LINE L1 6928 7220 -424 7 1693 246 195 190 25 chr6 145325261 145325340 -4191697 + RSINE1 SINE B4 74 165 0 7 1693 836 156 0 27 chr6 145325340 145325525 -4191512 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1693 261 211 0 0 chr6 145325536 145325593 -4191444 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1693 568 232 98 16 chr6 145325653 145325837 -4191200 - B3 SINE B2 -15 201 3 7 1693 626 223 19 19 chr6 145326138 145326316 -4190721 - MTD LTR MaLR -5 416 243 7 1693 1223 237 143 63 chr6 145326258 145326749 -4190288 + RLTR31A_Mm LTR ERVK 55 584 0 7 1693 718 300 30 30 chr6 145326749 145326979 -4190058 - MTD LTR MaLR -185 234 5 7 1693 870 218 44 10 chr6 145328453 145328657 -4188380 - B3 SINE B2 -3 213 3 7 1693 328 236 95 63 chr6 145328781 145328807 -4188230 + B4 SINE B4 2 36 -256 7 1693 495 0 0 0 chr6 145328807 145328862 -4188175 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1693 328 236 95 63 chr6 145328862 145328930 -4188107 + B4 SINE B4 37 98 -194 7 1693 307 275 125 0 chr6 145329197 145329277 -4187760 - MTEa LTR MaLR -283 96 7 7 1693 23 0 0 0 chr6 145329370 145329393 -4187644 + AT_rich Low_complexity Low_complexity 1 23 0 7 1693 404 295 47 77 chr6 145330188 145330357 -4186680 + B4A SINE B4 117 280 -12 7 1693 299 167 15 0 chr6 145331919 145331985 -4185052 + GA-rich Low_complexity Low_complexity 3 69 0 7 1693 937 224 24 10 chr6 145332140 145332347 -4184690 - B3 SINE B2 -6 210 1 7 1693 886 278 87 68 chr6 145332454 145332795 -4184242 + MTE2a LTR MaLR 54 419 0 7 1693 7924 62 22 10 chr6 145332826 145334075 -4182962 - L1_Mus3 LINE L1 0 6638 5463 7 1693 224 59 29 0 chr6 145334708 145334742 -4182295 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 7 1693 637 300 21 43 chr6 145334747 145334935 -4182102 - ID_B1 SINE B4 -9 215 32 7 1693 225 0 0 0 chr6 145335764 145335789 -4181248 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1693 21 0 0 0 chr6 145336752 145336773 -4180264 + AT_rich Low_complexity Low_complexity 1 21 0 7 1693 2530 190 44 4 chr6 145337135 145337636 -4179401 + RLTR28 LTR ERVL 1 521 -3 7 1693 860 181 29 39 chr6 145338150 145338357 -4178680 - RLTR28 LTR ERVL -64 460 256 7 1693 903 196 26 5 chr6 145338805 145339000 -4178037 - RLTR28 LTR ERVL -1 523 325 7 1693 2354 232 159 44 chr6 145339033 145339920 -4177117 - RMER12 LTR ERVK -26 1296 308 7 1693 1742 166 9 25 chr6 145340762 145341084 -4175953 - RMER12 LTR ERVK -1005 317 1 7 1693 1538 207 55 3 chr6 145341084 145341395 -4175642 - RLTR28 LTR ERVL -194 330 3 7 1693 311 236 63 106 chr6 145342610 145342752 -4174285 + B3A SINE B2 1 136 -62 7 1693 847 266 76 11 chr6 145343009 145343271 -4173766 - ORR1D1 LTR MaLR 0 374 96 7 1693 1871 210 56 41 chr6 145343271 145343837 -4173200 + RMER12 LTR ERVK 1 781 -623 7 1693 1247 48 0 0 chr6 145343837 145343984 -4173053 + B1_Mus2 SINE Alu 1 147 0 7 1693 269 340 93 74 chr6 145343984 145344204 -4172833 + RMER12 LTR ERVK 782 1009 -395 7 1693 353 250 57 134 chr6 145344389 145344546 -4172491 + RMER12 LTR ERVK 958 1102 -220 7 1693 581 176 32 0 chr6 145344583 145344708 -4172329 - Lx4A LINE L1 -1 7057 6929 7 1693 1557 112 36 0 chr6 145344713 145344936 -4172101 + Lx4A LINE L1 6684 6914 -144 7 1693 585 155 146 8 chr6 145344948 145345078 -4171959 + RMER12 LTR ERVK 1175 1322 0 7 1693 441 280 10 0 chr6 145345078 145345178 -4171859 - ORR1D1 LTR MaLR -273 101 1 7 1693 564 257 49 14 chr6 145345505 145345647 -4171390 + B1_Mur1 SINE Alu 3 149 0 7 1693 352 225 74 12 chr6 145345698 145345779 -4171258 + PB1D7 SINE Alu 28 113 -7 7 1693 459 0 0 0 chr6 145346175 145346226 -4170811 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1693 237 254 18 0 chr6 145346346 145346401 -4170636 - PB1D10 SINE Alu -27 90 35 7 1693 337 300 94 55 chr6 145347064 145347191 -4169846 + B1F SINE Alu 17 148 -1 7 1693 3663 136 18 9 chr6 145348555 145349121 -4167916 + L1VL2 LINE L1 65 635 -5700 7 1693 3117 137 256 33 chr6 145349572 145350260 -4166777 - RMER21B LTR ERV1 -1 841 1 7 1693 245 184 0 20 chr6 145350424 145350474 -4166563 + B1_Mur4 SINE Alu 93 141 -9 7 1693 225 278 88 11 chr6 145351325 145351416 -4165621 - Charlie4z DNA MER1_type -24 143 46 7 1693 436 217 37 19 chr6 145351460 145351568 -4165469 + PB1D10 SINE Alu 1 110 -7 7 1693 696 263 149 65 chr6 145351575 145352039 -4164998 + RLTR16 LTR ERVK 1 503 -2 7 1693 24 53 0 0 chr6 145352189 145352227 -4164810 + AT_rich Low_complexity Low_complexity 1 38 0 7 1693 422 279 57 9 chr6 145352247 145352352 -4164685 + B1F SINE Alu 39 148 -1 7 1693 917 209 68 5 chr6 145353264 145353456 -4163581 + B3 SINE B2 3 206 -10 7 1693 12676 99 26 11 chr6 145353691 145356419 -4160618 + L1Md_F LINE L1 167 2938 -2945 7 1693 27 62 0 0 chr6 145356421 145356469 -4160568 + AT_rich Low_complexity Low_complexity 1 48 0 7 1693 11209 65 19 8 chr6 145356518 145358679 -4158358 - L1Md_F2 LINE L1 -12 6570 4389 7 211 14658 97 5 4 chr6 145358679 145360769 -4156268 + L1Md_F LINE L1 2942 5033 -850 7 1694 296 71 0 0 chr6 145360774 145360816 -4156221 + RLTR10B2 LTR ERVK 1 42 -250 7 1694 2076 75 84 39 chr6 145360838 145361170 -4155867 + RLTR10B2 LTR ERVK 18 364 -1 7 1694 3851 71 39 19 chr6 145361170 145361688 -4155349 + L1_Mus2 LINE L1 6039 6566 0 7 1694 371 191 0 0 chr6 145362206 145362274 -4154763 - B1F SINE Alu -3 146 79 7 1694 33 25 0 0 chr6 145362293 145362333 -4154704 + AT_rich Low_complexity Low_complexity 1 40 0 7 1694 1567 214 49 22 chr6 145363699 145364066 -4152971 - MTD LTR MaLR -8 411 35 7 1694 665 257 34 0 chr6 145364607 145364782 -4152255 + B3A SINE B2 2 182 -16 7 1694 186 196 9 47 chr6 145364812 145364919 -4152118 + (CA)n Simple_repeat Simple_repeat 1 103 0 7 1694 241 145 0 31 chr6 145364987 145365051 -4151986 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1694 220 316 9 84 chr6 145366157 145366264 -4150773 - PB1 SINE Alu -10 117 19 7 1694 259 264 90 77 chr6 145366334 145366490 -4150547 + Charlie12 DNA MER1_type 10 167 -2706 7 1694 322 374 50 0 chr6 145368469 145368568 -4148469 + B1F2 SINE Alu 14 117 -32 7 1694 685 297 30 0 chr6 145368685 145368887 -4148150 - B3 SINE B2 -8 208 1 7 1694 751 249 25 0 chr6 145369024 145369225 -4147812 + B3 SINE B2 2 207 -9 7 1694 241 310 104 78 chr6 145369826 145369980 -4147057 - B4A SINE B4 -87 205 48 7 1694 486 322 60 5 chr6 145370260 145370444 -4146593 + MLT1E2 LTR MaLR 21 214 -413 7 1694 277 316 30 15 chr6 145370491 145370626 -4146411 + MLT1E2 LTR MaLR 328 464 -163 7 1694 468 280 93 0 chr6 145370671 145370748 -4146289 + RSINE1 SINE B4 3 79 -86 7 1694 324 70 0 0 chr6 145370748 145370791 -4146246 + (TGG)n Simple_repeat Simple_repeat 3 45 0 7 1694 468 280 93 0 chr6 145370791 145370820 -4146217 + RSINE1 SINE B4 80 118 -47 7 1694 273 250 16 0 chr6 145370889 145370953 -4146084 + MLT1E2 LTR MaLR 563 627 0 7 1694 192 40 0 0 chr6 145371393 145371418 -4145619 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1694 470 299 32 19 chr6 145371429 145371586 -4145451 - RSINE1 SINE B4 -5 160 2 7 1694 255 146 0 0 chr6 145371722 145371777 -4145260 + (GTATG)n Simple_repeat Simple_repeat 2 56 0 7 1694 340 304 127 35 chr6 145371837 145372151 -4144886 - L1MEg LINE L1 -5322 762 420 7 1694 264 274 153 24 chr6 145372649 145372858 -4144179 + L1MEc LINE L1 254 489 -5911 7 1694 668 201 174 27 chr6 145373637 145373821 -4143216 + B4 SINE B4 3 213 -79 7 1694 206 256 133 44 chr6 145373824 145373914 -4143123 - MER5B DNA MER1_type -26 152 55 7 1694 181 304 60 48 chr6 145374012 145374095 -4142942 + L2b LINE L2 3102 3185 -190 7 1694 357 277 64 0 chr6 145374181 145374275 -4142762 + B4 SINE B4 9 108 -184 7 1694 620 212 28 83 chr6 145374509 145374689 -4142348 + B4 SINE B4 123 292 0 7 1694 596 209 3 0 chr6 145374689 145375056 -4141981 + (CA)n Simple_repeat Simple_repeat 1 368 0 7 1694 1199 61 0 7 chr6 145380962 145381111 -4135926 + B1_Mus1 SINE Alu 1 148 0 7 1694 240 225 256 11 chr6 145381681 145381771 -4135266 - PB1D10 SINE Alu 0 117 6 7 1694 180 310 51 17 chr6 145381943 145382002 -4135035 - MER5A DNA MER1_type -86 103 43 7 1694 220 370 27 0 chr6 145382031 145382104 -4134933 - RSINE1 SINE B4 -73 92 18 7 1694 504 280 32 0 chr6 145384753 145384878 -4132159 + B1F2 SINE Alu 21 149 0 7 1694 872 173 0 45 chr6 145385094 145385251 -4131786 - B1_Mur4 SINE Alu 0 150 1 7 1694 260 267 0 0 chr6 145386112 145386172 -4130865 + B4A SINE B4 32 91 -201 7 1694 414 100 0 0 chr6 145387108 145387168 -4129869 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1694 584 252 39 0 chr6 145387257 145387412 -4129625 - B4 SINE B4 -131 161 1 7 1694 387 0 0 0 chr6 145388159 145388202 -4128835 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1694 420 111 0 0 chr6 145389967 145390030 -4127007 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1694 207 0 0 0 chr6 145390831 145390854 -4126183 + (TC)n Simple_repeat Simple_repeat 2 24 0 7 1694 1029 40 0 0 chr6 145390854 145390979 -4126058 + (TG)n Simple_repeat Simple_repeat 1 126 0 7 1694 609 335 77 42 chr6 145391023 145391282 -4125755 - B4A SINE B4 -19 273 6 7 1694 194 156 22 0 chr6 145392017 145392062 -4124975 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1694 655 289 11 27 chr6 145392074 145392259 -4124778 - B3A SINE B2 -16 182 1 7 1694 1113 110 0 0 chr6 145392339 145392484 -4124553 - B1_Mur4 SINE Alu -5 145 1 7 1694 649 287 118 7 chr6 145392884 145393172 -4123865 - L2 LINE L2 -584 2835 2516 8 1694 494 270 0 6 chr6 145393192 145393371 -4123666 + (CA)n Simple_repeat Simple_repeat 1 178 0 8 1694 519 250 0 0 chr6 145393391 145393555 -4123482 + (CA)n Simple_repeat Simple_repeat 1 164 0 8 1694 417 158 0 13 chr6 145395501 145395578 -4121459 + B3A SINE B2 1 76 -122 8 1694 310 241 136 85 chr6 145396197 145396374 -4120663 + B2_Mm2 SINE B2 1 186 -9 8 1694 323 307 101 16 chr6 145397426 145397592 -4119445 + L1M5 LINE L1 5335 5512 -728 8 1694 312 27 0 0 chr6 145397909 145397946 -4119091 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1694 392 182 0 233 chr6 145398223 145398352 -4118685 + B4 SINE B4 194 292 0 8 1694 359 149 14 43 chr6 145398366 145398436 -4118601 + HAL1-3A_ME LINE L1 1975 2042 -816 8 1694 27 0 0 0 chr6 145399312 145399339 -4117698 + AT_rich Low_complexity Low_complexity 1 27 0 8 1694 291 337 0 0 chr6 145399359 145399442 -4117595 - B3A SINE B2 -33 165 83 8 1694 1714 116 48 55 chr6 145400373 145400665 -4116372 + ORR1A4 LTR MaLR 1 290 -39 8 1694 245 337 31 10 chr6 145400665 145400761 -4116276 - B4 SINE B4 -193 99 2 8 1694 2629 135 31 17 chr6 145400795 145401210 -4115827 + MTC LTR MaLR 1 421 0 8 1694 368 282 135 16 chr6 145401280 145401406 -4115631 + B4A SINE B4 1 141 -151 8 1694 381 43 0 0 chr6 145401408 145401455 -4115582 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1694 255 61 0 0 chr6 145401455 145401488 -4115549 + (TA)n Simple_repeat Simple_repeat 1 33 0 8 1694 236 304 69 74 chr6 145401754 145401971 -4115066 - L3 LINE CR1 -228 4261 4046 8 1694 430 251 0 35 chr6 145402881 145403050 -4113987 + GA-rich Low_complexity Low_complexity 1 163 0 8 1694 451 319 2 57 chr6 145402996 145403375 -4113662 + G-rich Low_complexity Low_complexity 1 357 0 8 1694 864 41 16 8 chr6 145403468 145403590 -4113447 + (TG)n Simple_repeat Simple_repeat 2 124 0 8 1694 190 408 0 26 chr6 145403623 145403701 -4113336 + L2b LINE L2 3242 3317 -58 8 1694 818 157 6 0 chr6 145403936 145404114 -4112923 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1694 217 188 30 30 chr6 145404116 145404182 -4112855 + (CAGAGA)n Simple_repeat Simple_repeat 5 70 0 8 1694 208 111 44 0 chr6 145404190 145404235 -4112802 + CT-rich Low_complexity Low_complexity 3 49 0 8 1694 393 256 127 6 chr6 145404671 145404836 -4112201 + MLT1D LTR MaLR 31 215 -290 8 1694 651 298 72 6 chr6 145405014 145405338 -4111699 - MLT1B LTR MaLR -1 389 17 8 1694 339 276 139 13 chr6 145405353 145405519 -4111518 - MLT2B3 LTR ERVL 0 554 335 8 1694 297 0 0 0 chr6 145406221 145406254 -4110783 + (TC)n Simple_repeat Simple_repeat 2 34 0 8 1694 563 318 52 0 chr6 145406271 145406425 -4110612 - RSINE1 SINE B4 -2 163 2 8 1694 196 283 43 0 chr6 145406488 145406534 -4110503 - L2c LINE L2 -73 3314 3267 8 1694 321 26 0 0 chr6 145406540 145406578 -4110459 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1694 219 195 0 0 chr6 145407045 145407086 -4109951 - MIRc SINE MIR -134 134 94 8 1694 241 283 83 66 chr6 145407665 145407786 -4109251 + MER5B DNA MER1_type 4 126 -52 8 1694 379 366 10 20 chr6 145408198 145408396 -4108641 + Lx8 LINE L1 7033 7228 -245 8 1694 261 313 29 43 chr6 145408424 145408564 -4108473 + RMER15 LTR ERVL 425 562 -13 8 1694 801 241 49 98 chr6 145408867 145409124 -4107913 + B4A SINE B4 40 283 -9 8 1694 347 194 19 19 chr6 145410398 145410503 -4106534 + GA-rich Low_complexity Low_complexity 2 106 0 8 1694 184 319 37 122 chr6 145411172 145411279 -4105758 - MIRb SINE MIR -66 202 105 8 1694 926 254 84 94 chr6 145412003 145412385 -4104652 - MTE2b LTR MaLR -1 378 1 8 1694 1220 141 234 4 chr6 145412458 145412714 -4104323 - MTC LTR MaLR 0 421 107 8 1694 1202 193 97 0 chr6 145413082 145413320 -4103717 + RMER1B Other Other 45 305 -761 8 1694 1285 176 110 10 chr6 145413331 145413623 -4103414 + RMER1B Other Other 746 1066 0 8 1694 313 192 0 0 chr6 145413660 145413712 -4103325 - MTC LTR MaLR -369 52 1 8 1694 749 155 11 22 chr6 145414472 145414650 -4102387 + CT-rich Low_complexity Low_complexity 3 178 0 8 1694 1594 171 132 12 chr6 145415672 145416004 -4101033 - ORR1D1 LTR MaLR 0 374 3 8 1694 373 319 66 15 chr6 145416124 145416261 -4100776 + B1F2 SINE Alu 1 144 -5 8 1694 297 320 171 26 chr6 145416535 145416769 -4100268 + L1M4b LINE L1 340 607 -6727 8 1694 409 333 36 13 chr6 145416793 145417018 -4100019 - L1_Mur3 LINE L1 -397 5483 5254 8 1694 761 110 14 14 chr6 145417264 145417411 -4099626 + (TG)n Simple_repeat Simple_repeat 1 147 0 8 1694 463 250 0 11 chr6 145417444 145417626 -4099411 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1694 944 75 75 0 chr6 145418930 145419063 -4097974 + B2_Mm2 SINE B2 1 143 -52 8 1694 1993 283 90 10 chr6 145419559 145420159 -4096878 + RCHARR1 DNA MER1_type 6 653 -321 8 1694 668 353 88 3 chr6 145420228 145420569 -4096468 - Charlie7 DNA MER1_type -1923 689 320 8 1694 717 244 25 18 chr6 145421104 145421267 -4095770 + B3A SINE B2 9 172 -26 8 1694 215 139 28 0 chr6 145421818 145421854 -4095183 + GA-rich Low_complexity Low_complexity 3 39 0 8 1694 690 262 57 17 chr6 145422386 145422561 -4094476 + B3A SINE B2 1 182 -16 8 1694 246 342 0 109 chr6 145423619 145423747 -4093290 - B1_Mus1 SINE Alu -3 145 32 8 1694 622 231 74 34 chr6 145423836 145424011 -4093026 - B3A SINE B2 -16 182 1 8 1694 262 336 44 15 chr6 145424949 145425085 -4091952 + B1F1 SINE Alu 3 142 -7 8 1694 283 219 96 0 chr6 145425099 145425172 -4091865 + ID4_ SINE ID 1 80 -3 8 1694 2220 233 16 57 chr6 145425344 145425890 -4091147 + RMER5 LTR ERV1 2 525 -9 8 1694 577 296 62 0 chr6 145426163 145426342 -4090695 - MLT1B LTR MaLR -6 384 195 8 1694 1032 229 117 61 chr6 145426385 145426425 -4090612 - MT2B LTR ERVL 0 601 530 8 1694 441 0 0 0 chr6 145426425 145426474 -4090563 + (TC)n Simple_repeat Simple_repeat 2 50 0 8 1694 315 0 0 0 chr6 145426474 145426508 -4090529 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1694 1032 229 117 61 chr6 145426508 145426792 -4090245 - MT2B LTR ERVL -72 529 260 8 1694 248 200 200 56 chr6 145426783 145426873 -4090164 - MT2B LTR ERVL -458 143 41 8 1694 231 45 0 62 chr6 145428316 145428364 -4088673 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 8 1694 212 269 19 0 chr6 145429193 145429245 -4087792 + PB1 SINE Alu 11 63 -64 8 1694 237 83 0 0 chr6 145429832 145429868 -4087169 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 8 1694 1147 95 0 7 chr6 145429886 145430034 -4087003 + B1_Mus1 SINE Alu 1 147 -1 8 1694 294 95 0 0 chr6 145430321 145430363 -4086674 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1694 233 288 0 0 chr6 145430366 145430432 -4086605 + (CAG)n Simple_repeat Simple_repeat 3 68 0 8 1694 2046 171 166 63 chr6 145431255 145431779 -4085258 + RLTR20A2 LTR ERVK 1 578 0 8 1694 757 263 28 9 chr6 145431991 145432202 -4084835 + ID_B1 SINE B4 5 219 -5 8 1694 229 197 0 27 chr6 145432202 145432275 -4084762 + G-rich Low_complexity Low_complexity 3 73 0 8 1694 1376 301 139 46 chr6 145432413 145433169 -4083868 - Lx8 LINE L1 -99 7374 6549 8 1694 2816 260 117 45 chr6 145433182 145434370 -4082667 + L1_Mur3 LINE L1 3600 4873 -1007 8 1694 224 117 83 0 chr6 145434469 145434529 -4082508 + (TTTG)n Simple_repeat Simple_repeat 2 66 0 8 1694 1303 177 5 14 chr6 145435802 145436020 -4081017 + B3 SINE B2 1 216 0 8 1694 425 190 72 32 chr6 145437054 145437153 -4079884 + B1F SINE Alu 34 132 -17 8 1694 186 43 0 0 chr6 145437181 145437204 -4079833 + (TC)n Simple_repeat Simple_repeat 2 24 0 8 1694 857 246 11 16 chr6 145437215 145437397 -4079640 - B3A SINE B2 -16 182 2 8 1694 3189 6 43 0 chr6 145437570 145437922 -4079115 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1694 9130 23 3 1 chr6 145437922 145439002 -4078035 - IAPEz-int LTR ERVK 0 6481 5400 8 1694 20709 37 41 0 chr6 145438980 145441539 -4075498 - IAPEz-int LTR ERVK -3811 2670 8 8 1694 3189 6 43 0 chr6 145441539 145441891 -4075146 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1694 288 224 0 118 chr6 145441892 145442079 -4074958 + (GGTTG)n Simple_repeat Simple_repeat 3 167 0 8 1694 262 233 5 122 chr6 145442165 145442546 -4074491 + (TTGTG)n Simple_repeat Simple_repeat 1 336 0 8 1694 277 258 199 31 chr6 145442679 145442875 -4074162 - L1M2c LINE L1 -1497 5288 5060 8 1694 332 323 76 30 chr6 145442876 145443074 -4073963 - L1M2c LINE L1 -4836 1953 1747 8 1694 1067 264 18 54 chr6 145443085 145443361 -4073676 + B4A SINE B4 5 270 -22 8 1694 286 349 77 8 chr6 145443346 145443476 -4073561 - B1F SINE Alu -10 139 1 8 1694 235 302 70 23 chr6 145444442 145444571 -4072466 + MIR SINE MIR 97 231 -31 8 1694 297 349 93 56 chr6 145444879 145445040 -4071997 - LTR33 LTR ERVL -265 250 84 8 1694 590 248 65 7 chr6 145445458 145445612 -4071425 + RSINE1 SINE B4 2 164 -1 8 1694 300 98 18 73 chr6 145445648 145445703 -4071334 + HAL1-3A_ME LINE L1 1976 2027 -831 8 1694 357 169 0 0 chr6 145445703 145445786 -4071251 + (CA)n Simple_repeat Simple_repeat 1 83 0 8 1694 240 370 34 11 chr6 145446810 145446985 -4070052 + Lx8 LINE L1 7033 7211 -262 8 1694 299 246 211 53 chr6 145447042 145447175 -4069862 + RMER15 LTR ERVL 422 575 0 8 1694 1357 195 23 11 chr6 145448975 145449240 -4067797 - MTD LTR MaLR -132 287 20 8 1694 807 163 0 0 chr6 145449262 145449490 -4067547 + (CA)n Simple_repeat Simple_repeat 1 228 0 8 1694 796 231 66 6 chr6 145450390 145450573 -4066464 + MTD LTR MaLR 3 196 -223 8 1694 205 312 154 35 chr6 145450952 145451095 -4065942 - L2 LINE L2 -897 2522 2363 8 1694 710 209 3 0 chr6 145451250 145451581 -4065456 + GA-rich Low_complexity Low_complexity 1 331 0 8 1694 5428 155 23 27 chr6 145452003 145452993 -4064044 + RLTR25A LTR ERVK 1 1028 0 8 1694 24 32 0 0 chr6 145453117 145453148 -4063889 + AT_rich Low_complexity Low_complexity 1 31 0 8 1694 219 69 0 0 chr6 145453492 145453521 -4063516 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1694 1174 43 0 0 chr6 145453586 145453725 -4063312 + B1_Mus1 SINE Alu 2 140 -8 8 1694 266 331 62 56 chr6 145455323 145455483 -4061554 - MLT1A1 LTR MaLR 0 408 248 9 1694 895 283 136 21 chr6 145455620 145455952 -4061085 + MTD LTR MaLR 5 374 -45 9 1694 315 0 0 0 chr6 145457314 145457349 -4059688 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1694 1697 26 0 0 chr6 145458167 145458360 -4058677 + B2_Mm1t SINE B2 1 193 0 9 1694 244 287 0 138 chr6 145458932 145459041 -4057996 + L2c LINE L2 3293 3386 -1 9 1694 357 195 246 0 chr6 145459092 145459210 -4057827 - B3 SINE B2 -67 149 3 9 1694 647 90 10 0 chr6 145459593 145459693 -4057344 + (CCTA)n Simple_repeat Simple_repeat 3 103 0 9 1694 306 0 0 0 chr6 145460380 145460414 -4056623 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1694 399 215 51 0 chr6 145461487 145461566 -4055471 + PB1D10 SINE Alu 19 101 -16 9 1694 707 297 209 28 chr6 145461593 145461991 -4055046 - MLT2B4 LTR ERVL -62 494 25 9 1694 346 206 96 82 chr6 145462836 145462975 -4054062 + MIR SINE MIR 11 167 -101 9 1694 451 189 0 124 chr6 145462982 145463103 -4053934 + MT2B LTR ERVL 159 264 -337 9 1694 1146 49 0 0 chr6 145462996 145463138 -4053899 + B1_Mus2 SINE Alu 6 147 0 9 1694 507 287 59 91 chr6 145463488 145463795 -4053242 + Lx8 LINE L1 6940 7236 -237 9 1694 199 93 23 23 chr6 145463857 145463869 -4053168 + (CAAAA)n Simple_repeat Simple_repeat 2 13 0 9 1694 1092 96 0 0 chr6 145463869 145464015 -4053022 + B1_Mm SINE Alu 2 147 0 9 1694 199 93 23 23 chr6 145464015 145464046 -4052991 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 9 1694 501 254 123 0 chr6 145464168 145464290 -4052747 + B1_Mur1 SINE Alu 13 149 0 9 1694 845 238 161 38 chr6 145466794 145466844 -4050193 + MT2B LTR ERVL 6 88 -513 9 1694 274 289 104 13 chr6 145466844 145466921 -4050116 + MTE2b LTR MaLR 70 153 -226 9 1694 845 238 161 38 chr6 145466921 145467201 -4049836 + MT2B LTR ERVL 89 560 -41 9 1694 315 0 0 0 chr6 145467201 145467236 -4049801 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1694 845 276 64 43 chr6 145467236 145467278 -4049759 + MT2B LTR ERVL 561 601 0 9 1694 804 229 61 19 chr6 145468265 145468479 -4048558 + MTE2b LTR MaLR 1 223 -156 9 1694 2484 134 11 0 chr6 145468482 145468855 -4048182 - ORR1C1 LTR MaLR -1 377 1 9 1694 343 261 209 0 chr6 145468862 145468977 -4048060 + MTE2b LTR MaLR 241 379 0 9 1694 6191 53 0 4 chr6 145469063 145469820 -4047217 - L1_Mus1 LINE L1 0 6567 5814 9 1694 758 279 28 56 chr6 145469990 145470045 -4046992 - B3 SINE B2 0 216 159 9 1694 402 74 0 0 chr6 145470045 145470099 -4046938 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1694 758 279 28 56 chr6 145470099 145470134 -4046903 - B3 SINE B2 -58 158 128 9 1694 3537 120 12 23 chr6 145470134 145470697 -4046340 + RLTR31B_Mm LTR ERVK 1 557 0 9 1694 758 279 28 56 chr6 145470697 145470821 -4046216 - B3 SINE B2 -89 127 7 9 1694 243 0 0 0 chr6 145472993 145473020 -4044017 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 1694 515 261 14 42 chr6 145473898 145473990 -4043047 - ID_B1 SINE B4 -1 223 134 9 1694 3502 43 30 7 chr6 145473990 145474416 -4042621 + RLTR10C LTR ERVK 1 436 0 9 1694 515 261 14 42 chr6 145474416 145474467 -4042570 - ID_B1 SINE B4 -91 133 84 9 1694 806 281 48 8 chr6 145474528 145474776 -4042261 - B4A SINE B4 -6 286 29 9 1694 367 255 39 0 chr6 145474967 145475069 -4041968 - PB1D7 SINE Alu -14 106 1 9 1694 291 288 24 105 chr6 145475118 145475242 -4041795 - PB1D10 SINE Alu 0 117 4 9 1694 720 274 51 0 chr6 145475242 145475317 -4041720 - ID_B1 SINE B4 -133 91 8 9 1694 252 0 0 0 chr6 145475845 145475873 -4041164 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 9 1694 599 284 139 46 chr6 145476345 145476810 -4040227 + MLT2B1 LTR ERVL 6 528 -27 9 1694 2322 89 3 92 chr6 145476845 145477204 -4039833 - ORR1A2 LTR MaLR 0 327 1 9 1694 22 0 0 0 chr6 145477212 145477234 -4039803 + AT_rich Low_complexity Low_complexity 1 22 0 9 1694 370 259 321 25 chr6 145477272 145477434 -4039603 - B3 SINE B2 0 216 7 9 1694 598 320 251 31 chr6 145477483 145478151 -4038886 - Charlie1a DNA MER1_type -272 1183 369 9 1694 837 168 0 0 chr6 145478158 145478313 -4038724 + (TA)n Simple_repeat Simple_repeat 2 156 0 9 1694 275 187 118 13 chr6 145478410 145478486 -4038551 - Charlie1a DNA MER1_type -1285 170 87 9 1694 797 256 24 10 chr6 145478605 145478810 -4038227 + Lx7 LINE L1 6138 6345 -1351 9 1694 1239 301 73 15 chr6 145478841 145479361 -4037676 + Lx7 LINE L1 6784 7333 -363 9 1694 585 183 0 27 chr6 145479375 145479521 -4037516 + G-rich Low_complexity Low_complexity 5 146 0 9 1694 224 77 0 25 chr6 145479517 145479557 -4037480 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 9 1694 2850 105 46 11 chr6 145479676 145480130 -4036907 - Lx LINE L1 0 6654 6185 9 1694 226 200 0 0 chr6 145480171 145480206 -4036831 + B1F2 SINE Alu 2 36 -113 9 1694 1223 61 0 0 chr6 145480340 145480487 -4036550 - B1_Mus1 SINE Alu 0 148 2 9 1694 234 146 0 0 chr6 145480520 145480568 -4036469 - B3 SINE B2 -1 215 168 9 1694 2832 55 0 3 chr6 145480546 145480908 -4036129 - ORR1A1-int LTR MaLR -1352 440 80 9 1694 687 245 20 0 chr6 145480910 145481057 -4035980 - B3 SINE B2 -66 150 1 9 1694 426 296 17 0 chr6 145481057 145481156 -4035881 + ID_B1 SINE B4 120 220 -4 9 1694 1342 263 40 6 chr6 145481931 145482279 -4034758 - MTEa LTR MaLR -19 360 1 9 1694 363 295 153 38 chr6 145482378 145482639 -4034398 + L2a LINE L2 3132 3422 -4 9 1694 231 384 18 18 chr6 145482750 145482864 -4034173 + L2b LINE L2 3100 3213 -162 9 1694 203 269 116 21 chr6 145483143 145483238 -4033799 - L2 LINE L2 -667 2752 2649 9 1694 225 0 0 0 chr6 145483670 145483695 -4033342 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1694 308 270 77 95 chr6 145483699 145483867 -4033170 + RSINE1 SINE B4 1 165 0 9 1694 322 365 136 31 chr6 145484301 145484587 -4032450 + MER2 DNA MER2_type 19 334 -11 9 1694 1173 194 5 10 chr6 145485382 145485590 -4031447 + B3 SINE B2 1 207 -9 9 1694 549 110 0 0 chr6 145485598 145485680 -4031357 + (GGA)n Simple_repeat Simple_repeat 1 82 0 9 1694 576 286 32 7 chr6 145485703 145485841 -4031196 + B4A SINE B4 91 232 -60 9 1694 749 254 69 10 chr6 145485841 145486004 -4031033 + B3 SINE B2 1 165 -51 9 1694 450 88 0 0 chr6 145486004 145486072 -4030965 + (CA)n Simple_repeat Simple_repeat 2 69 0 9 1694 749 254 69 10 chr6 145486072 145486111 -4030926 + B3 SINE B2 166 214 -2 9 1694 432 250 0 0 chr6 145486200 145486376 -4030661 + (CA)n Simple_repeat Simple_repeat 1 176 0 9 1694 334 235 40 63 chr6 145486996 145487152 -4029885 + MLT1J LTR MaLR 1 180 -332 9 1694 243 61 0 0 chr6 145487152 145487185 -4029852 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1694 653 268 81 19 chr6 145487383 145487592 -4029445 - B4 SINE B4 -69 223 2 9 1694 333 355 8 8 chr6 145488706 145488831 -4028206 + CT-rich Low_complexity Low_complexity 3 127 0 9 1694 216 225 31 98 chr6 145489448 145489611 -4027426 + (CACAC)n Simple_repeat Simple_repeat 4 155 0 9 1694 231 207 60 109 chr6 145489535 145489719 -4027318 + (CATGC)n Simple_repeat Simple_repeat 1 175 0 9 1695 3742 11 119 11 chr6 145490056 145490501 -4026536 - MT2_Mm LTR ERVL 0 493 1 9 1695 1613 158 37 102 chr6 145490685 145491037 -4026000 + ORR1A4 LTR MaLR 1 329 0 9 1695 386 125 0 0 chr6 145491037 145491093 -4025944 + ORR1A3 LTR MaLR 271 326 0 9 1695 266 273 101 25 chr6 145491323 145491402 -4025635 + RSINE1 SINE B4 14 98 -67 9 1695 229 280 0 0 chr6 145491422 145491472 -4025565 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1695 360 0 0 0 chr6 145491526 145491566 -4025471 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1695 288 70 0 0 chr6 145491585 145491628 -4025409 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 9 1695 237 295 64 45 chr6 145491643 145491753 -4025284 - MLT1H LTR MaLR -37 512 401 9 1695 442 312 128 5 chr6 145492252 145492439 -4024598 + ID_B1 SINE B4 1 210 -14 9 1695 252 321 111 23 chr6 145492471 145492688 -4024349 + L1MDb LINE L1 915 1150 -5259 9 1695 273 339 70 0 chr6 145493294 145493409 -4023628 - MIRb SINE MIR -61 207 85 9 1695 564 261 88 72 chr6 145493416 145493689 -4023348 + ORR1E LTR MaLR 35 305 -65 9 1695 874 263 46 128 chr6 145493878 145494386 -4022651 + BGLII_B LTR ERVK 1 414 -27 9 1695 269 242 33 0 chr6 145495316 145495407 -4021630 + MYSERV6-int LTR ERVK 4843 4936 -4023 9 1695 891 136 158 36 chr6 145495492 145495714 -4021323 + MYSERV6-int LTR ERVK 6408 6656 -2303 9 1695 1446 275 84 55 chr6 145495706 145495871 -4021166 + MYSERV6-int LTR ERVK 62 240 -2086 9 1695 204 40 0 0 chr6 145495871 145495896 -4021141 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1695 1446 279 78 63 chr6 145495896 145496542 -4020495 + MYSERV6-int LTR ERVK 241 738 -1588 9 1695 475 312 52 17 chr6 145496554 145496727 -4020310 + RMER4A LTR ERVK 258 436 -30 9 1695 3702 219 44 67 chr6 145496733 145497048 -4019989 + MYSERV6-int LTR ERVK 7803 8041 -918 9 1695 1173 62 0 20 chr6 145497048 145497186 -4019851 + B1_Mm SINE Alu 2 139 -8 9 1695 201 39 0 0 chr6 145497186 145497212 -4019825 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 9 1695 3702 214 42 88 chr6 145497220 145498136 -4018901 + MYSERV6-int LTR ERVK 8042 8905 -54 9 1695 1001 292 50 25 chr6 145498200 145498604 -4018433 + BGLII_B LTR ERVK 1 414 -27 9 1695 1173 48 7 7 chr6 145498787 145498933 -4018104 + B1_Mus1 SINE Alu 3 148 0 9 1695 261 83 0 0 chr6 145498933 145498969 -4018068 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1695 234 162 188 51 chr6 145498970 145499087 -4017950 - L1M4c LINE L1 -4648 2686 2554 9 1695 462 101 0 0 chr6 145499089 145499158 -4017879 + (TG)n Simple_repeat Simple_repeat 1 69 0 9 1695 781 294 23 72 chr6 145499195 145499459 -4017578 - B4A SINE B4 -13 279 29 9 1695 332 304 103 20 chr6 145499735 145500000 -4017037 - L1M4c LINE L1 -4821 2281 1847 9 1695 302 352 36 36 chr6 145500039 145500204 -4016833 - L1M4b LINE L1 -6232 1102 938 1 1695 329 297 78 12 chr6 145501578 145501745 -4015292 - L1M4b LINE L1 -7117 217 40 1 1695 1206 36 0 0 chr6 145502148 145502287 -4014750 - B1_Mus1 SINE Alu -9 139 1 2 1695 260 341 11 0 chr6 145502588 145502679 -4014358 + L2a LINE L2 3047 3138 -288 3 1695 467 267 0 25 chr6 145502691 145502810 -4014227 + ID_B1 SINE B4 106 221 -3 4 1695 734 222 79 132 chr6 145503377 145503756 -4013281 - ORR1E LTR MaLR 0 359 1 5 1695 2307 89 25 3 chr6 145504277 145504592 -4012445 + ORR1A2 LTR MaLR 6 327 0 6 1695 270 116 0 0 chr6 145504987 145505030 -4012007 + (GAAAA)n Simple_repeat Simple_repeat 1 43 0 7 1695 392 345 111 0 chr6 145505922 145506093 -4010944 + Tigger5 DNA MER2_type 3 192 -2214 8 1695 403 272 149 53 chr6 145506193 145506449 -4010588 - MTE2a LTR MaLR -99 280 37 9 1695 6818 197 70 47 chr6 145506658 145508766 -4008271 - Lx6 LINE L1 -28 7432 5253 1 1695 282 56 0 0 chr6 145508772 145508808 -4008229 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1695 5668 171 46 14 chr6 145508811 145509156 -4007881 - Lx6 LINE L1 -904 4976 4626 1 1695 192 77 0 0 chr6 145509156 145509182 -4007855 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1695 5668 171 46 14 chr6 145509182 145509944 -4007093 - Lx6 LINE L1 -1255 4625 3835 1 1695 617 272 6 38 chr6 145509969 145510133 -4006904 - ID_B1 SINE B4 -62 230 77 1 1695 374 287 35 0 chr6 145510192 145510307 -4006730 + ID_B1 SINE B4 106 224 0 1 1695 290 227 0 43 chr6 145510465 145510534 -4006503 + polypyrimidine Low_complexity Low_complexity 3 68 0 1 1695 4747 132 76 71 chr6 145511262 145512160 -4004877 + RMER19B LTR ERVK 1 902 0 1 1695 491 302 142 28 chr6 145512233 145512451 -4004586 - RMER15 LTR ERVL -54 521 279 1 1695 244 157 0 56 chr6 145512513 145512567 -4004470 - RMER15 LTR ERVL -524 51 1 1 1695 378 107 0 0 chr6 145513118 145513174 -4003863 + (TCC)n Simple_repeat Simple_repeat 3 58 0 1 1695 377 263 57 85 chr6 145513189 145513330 -4003707 - PB1D7 SINE Alu -1 148 8 2 1695 262 342 54 0 chr6 145513823 145513934 -4003103 - MER94 DNA AcHobo 0 134 18 2 1695 240 103 52 0 chr6 145514032 145514090 -4002947 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1695 546 257 206 17 chr6 145514090 145514391 -4002646 + L1MA9 LINE L1 5546 5903 -409 2 1695 194 289 53 0 chr6 145514664 145514740 -4002297 - L2 LINE L2 -619 2800 2721 2 1695 223 36 0 0 chr6 145514950 145514978 -4002059 - B1_Mus1 SINE Alu -120 28 1 2 1695 199 353 99 23 chr6 145515007 145515178 -4001859 - MIR SINE MIR -78 184 1 2 1695 183 294 108 18 chr6 145515457 145515568 -4001469 + MIR SINE MIR 28 148 -114 2 1695 398 260 63 0 chr6 145515682 145515809 -4001228 + MLT1J2 LTR MaLR 162 296 -152 2 1695 799 298 108 47 chr6 145515906 145516248 -4000789 + MTEb LTR MaLR 12 374 -5 2 1695 1839 74 204 0 chr6 145516708 145516993 -4000044 - L1_Mm LINE L1 -480 5403 5061 3 1695 998 59 0 0 chr6 145516992 145517111 -3999926 + L1Md_F2 LINE L1 6116 6234 -348 3 1695 392 314 0 0 chr6 145518150 145518252 -3998785 + (CA)n Simple_repeat Simple_repeat 2 103 0 3 1695 382 243 90 43 chr6 145518252 145518463 -3998574 - RMER12 LTR ERVK -334 988 768 3 1695 653 182 6 29 chr6 145518463 145518638 -3998399 + (CATA)n Simple_repeat Simple_repeat 4 174 0 3 1695 223 147 0 0 chr6 145518645 145518679 -3998358 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1695 288 77 0 0 chr6 145519065 145519104 -3997933 + (TCC)n Simple_repeat Simple_repeat 2 40 0 3 1695 675 237 32 0 chr6 145519569 145519725 -3997312 - B3 SINE B2 -51 165 5 3 1695 877 287 64 44 chr6 145520318 145520661 -3996376 + ORR1E LTR MaLR 5 354 -5 3 1695 275 365 52 64 chr6 145520786 145521035 -3996002 - RMER5 LTR ERV1 -268 266 21 3 1695 1916 236 25 23 chr6 145521369 145521847 -3995190 + MT2A LTR ERVL 2 480 -53 4 1695 582 284 86 20 chr6 145522143 145522398 -3994639 - L1MC4 LINE L1 -963 7079 6808 4 1695 539 296 27 50 chr6 145523157 145523456 -3993581 + B4A SINE B4 1 292 0 4 1695 605 140 12 30 chr6 145523458 145523627 -3993410 + (CA)n Simple_repeat Simple_repeat 1 166 0 4 1695 275 260 12 3 chr6 145523912 145524013 -3993024 + L1P5 LINE L1 5355 5458 -986 4 1695 501 17 0 0 chr6 145524195 145524253 -3992784 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1695 186 133 0 0 chr6 145524842 145524872 -3992165 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1695 563 251 16 68 chr6 145524874 145525066 -3991971 - B3A SINE B2 -16 182 1 4 1695 470 272 35 17 chr6 145525443 145525559 -3991478 - B1F SINE Alu -19 130 13 4 1695 419 212 14 64 chr6 145526404 145526545 -3990492 - Lx9 LINE L1 -25 7619 7486 4 1695 735 71 0 0 chr6 145528264 145528362 -3988675 + (GGGAGA)n Simple_repeat Simple_repeat 3 100 0 5 1695 510 296 95 0 chr6 145528734 145528913 -3988124 - B3A SINE B2 -1 197 2 5 1695 352 288 53 59 chr6 145529289 145529459 -3987578 - LTR78 LTR ERV1 -102 1202 1034 5 1695 419 323 155 30 chr6 145530707 145531036 -3986001 + L1MEc LINE L1 298 667 -5733 5 1695 479 322 79 75 chr6 145531048 145531518 -3985519 + L1MEc LINE L1 715 1186 -5214 5 1695 388 227 17 0 chr6 145531841 145531960 -3985077 + GA-rich Low_complexity Low_complexity 4 124 0 5 1695 213 246 28 42 chr6 145531995 145532067 -3984970 + B4A SINE B4 1 71 -221 5 1695 503 304 22 7 chr6 145532403 145532542 -3984495 - RSINE1 SINE B4 -22 143 3 5 1695 289 291 98 79 chr6 145532718 145533035 -3984002 - L1MC2 LINE L1 -343 6001 5679 5 1695 297 231 13 0 chr6 145533174 145533252 -3983785 - L1MC2 LINE L1 -883 5461 5383 5 1695 262 217 0 16 chr6 145535243 145535304 -3981733 - B3 SINE B2 -2 214 155 5 1695 797 235 14 67 chr6 145535304 145535514 -3981523 - B3 SINE B2 -17 199 1 5 1695 741 300 9 5 chr6 145535792 145536003 -3981034 + ID_B1 SINE B4 1 212 -12 6 1695 478 308 146 30 chr6 145536315 145536643 -3980394 - L1ME3A LINE L1 -99 6074 5709 6 1695 297 0 0 0 chr6 145536662 145536695 -3980342 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1695 336 270 0 74 chr6 145537371 145537479 -3979558 - ID_B1 SINE B4 -3 221 122 6 1695 518 234 101 7 chr6 145537994 145538132 -3978905 + RSINE1 SINE B4 1 151 -14 6 1695 1678 209 100 5 chr6 145539001 145539372 -3977665 + MTD LTR MaLR 1 406 -13 6 1695 633 228 0 0 chr6 145539381 145539504 -3977533 + ID_B1 SINE B4 101 223 -1 6 1695 714 196 232 11 chr6 145541345 145541526 -3975511 - MTD LTR MaLR -3 416 196 6 1695 378 0 0 0 chr6 145541526 145541568 -3975469 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1695 216 367 0 52 chr6 145541600 145541715 -3975322 + PB1D10 SINE Alu 9 117 0 6 1695 669 317 55 0 chr6 145542036 145542235 -3974802 - MTD LTR MaLR -209 210 1 6 1695 910 301 63 17 chr6 145542264 145542501 -3974536 + B4A SINE B4 13 260 -32 7 1695 318 50 0 0 chr6 145542501 145542541 -3974496 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1695 206 313 35 46 chr6 145542717 145542804 -3974233 + MIRb SINE MIR 27 112 -156 7 1695 539 295 22 33 chr6 145543236 145543418 -3973619 - B4A SINE B4 -68 224 45 7 1695 210 250 0 0 chr6 145544328 145544400 -3972637 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1695 453 231 66 2 chr6 145545340 145545462 -3971575 - PB1 SINE Alu 0 127 1 7 1695 6231 112 3 7 chr6 145545746 145546653 -3970384 + Lx2 LINE L1 6094 6997 0 7 1695 222 118 0 0 chr6 145546776 145546810 -3970227 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1695 1180 176 15 0 chr6 145547071 145547276 -3969761 + URR1B DNA MER1_type 18 225 0 7 1695 226 273 169 0 chr6 145548390 145548467 -3968570 - MIRm SINE MIR -124 152 63 7 1695 424 296 35 21 chr6 145548498 145548643 -3968394 + MER3 DNA MER1_type 1 147 -62 8 1695 342 230 30 7 chr6 145548643 145548919 -3968118 + (TG)n Simple_repeat Simple_repeat 1 282 0 8 1695 290 212 29 43 chr6 145548922 145548991 -3968046 - B4 SINE B4 0 292 225 8 1695 242 106 106 0 chr6 145549091 145549138 -3967899 - B4 SINE B4 -239 53 2 8 1695 2667 105 80 3 chr6 145549234 145549624 -3967413 - MTC LTR MaLR -1 420 1 8 1695 618 233 167 25 chr6 145549760 145549951 -3967086 + ORR1E LTR MaLR 6 209 -165 8 1695 549 223 24 32 chr6 145550568 145550693 -3966344 + RMER20B LTR ERVK 2 125 -502 8 1695 421 190 70 10 chr6 145551177 145551281 -3965756 - PB1D7 SINE Alu -8 112 3 8 1695 335 211 254 24 chr6 145551281 145551295 -3965742 - ID_B1 SINE B4 0 176 70 8 1695 392 328 139 6 chr6 145551612 145551784 -3965253 + B4 SINE B4 94 288 -4 8 1695 283 308 15 23 chr6 145551854 145551987 -3965050 + (CATATA)n Simple_repeat Simple_repeat 4 135 0 9 1695 294 329 0 0 chr6 145552214 145552287 -3964750 - ID4_ SINE ID -4 79 7 9 1695 513 147 0 0 chr6 145552468 145552577 -3964460 + (GA)n Simple_repeat Simple_repeat 1 109 0 9 1695 755 273 73 25 chr6 145552717 145553009 -3964028 + B4A SINE B4 2 292 0 9 1695 21 36 0 0 chr6 145553495 145553523 -3963514 + AT_rich Low_complexity Low_complexity 1 28 0 9 1695 774 230 92 0 chr6 145553523 145553719 -3963318 - ID_B1 SINE B4 -5 219 6 9 1695 186 280 0 20 chr6 145553880 145553931 -3963106 + MIR3 SINE MIR 152 201 -7 9 1695 369 0 0 0 chr6 145554613 145554654 -3962383 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1695 648 306 112 19 chr6 145554674 145554934 -3962103 + B4 SINE B4 3 286 -6 9 1695 1177 75 0 0 chr6 145555491 145555638 -3961399 + B1_Mm SINE Alu 1 147 0 9 1695 697 259 73 29 chr6 145555886 145556160 -3960877 + B4 SINE B4 3 288 -4 1 1695 297 174 0 0 chr6 145556166 145556235 -3960802 + CT-rich Low_complexity Low_complexity 1 69 0 1 1695 205 211 39 0 chr6 145557366 145557418 -3959619 + (CAGA)n Simple_repeat Simple_repeat 3 56 0 1 1695 479 279 73 0 chr6 145558127 145558263 -3958774 + MTEb LTR MaLR 5 150 -229 1 1695 339 336 40 40 chr6 145558274 145558423 -3958614 + RSINE1 SINE B4 2 150 -15 1 1695 429 20 0 0 chr6 145558458 145558508 -3958529 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1695 408 197 23 29 chr6 145558596 145558698 -3958339 + MTEb LTR MaLR 168 266 -113 1 1695 453 260 68 11 chr6 145558998 145559168 -3957869 + MTEa LTR MaLR 193 379 0 1 1695 199 304 0 0 chr6 145559598 145559644 -3957393 - MIRm SINE MIR 0 276 231 1 1695 219 238 193 0 chr6 145559800 145559883 -3957154 + L2a LINE L2 3269 3416 -10 1 1695 495 0 0 0 chr6 145559899 145559954 -3957083 + (TAA)n Simple_repeat Simple_repeat 3 57 0 1 1695 715 290 22 45 chr6 145560262 145560486 -3956551 + B4 SINE B4 1 219 -73 1 1695 645 231 31 0 chr6 145560685 145560815 -3956222 + B1_Mur1 SINE Alu 1 134 -15 1 1695 280 270 54 43 chr6 145560809 145560902 -3956135 + PB1D10 SINE Alu 21 114 -3 1 1695 521 228 241 0 chr6 145561704 145561866 -3955171 - ID_B1 SINE B4 -6 218 18 1 1695 1129 233 73 25 chr6 145562818 145563143 -3953894 - MTD LTR MaLR -35 384 6 1 1695 365 356 58 0 chr6 145563169 145563377 -3953660 + ID_B1 SINE B4 3 222 -2 1 1695 304 289 0 0 chr6 145563392 145563468 -3953569 + MTEb LTR MaLR 253 328 -51 1 1695 327 284 1 13 chr6 145563487 145563574 -3953463 + AluG_3 SINE Alu 141 215 -96 1 1695 387 0 0 0 chr6 145563818 145563861 -3953176 + (TAAAA)n Simple_repeat Simple_repeat 4 46 0 1 1695 239 284 75 50 chr6 145563943 145564070 -3952967 + B1F SINE Alu 3 140 -9 1 1695 275 345 63 9 chr6 145565323 145565434 -3951603 + ID_B1 SINE B4 91 207 -17 1 1695 329 222 157 33 chr6 145565929 145566050 -3950987 - MTD LTR MaLR 0 419 284 1 1695 351 150 17 0 chr6 145566054 145566114 -3950923 + PB1D9 SINE Alu 59 119 -1 1 1695 294 297 0 86 chr6 145566418 145566499 -3950538 + PB1D10 SINE Alu 1 74 -43 1 1695 256 235 294 0 chr6 145568954 145569022 -3948015 + ID_B1 SINE B4 89 176 -48 1 1695 1367 48 0 0 chr6 145571108 145571273 -3945764 - B2_Mm2 SINE B2 -28 167 3 1 1695 613 250 0 30 chr6 145571314 145571446 -3945591 - RSINE1 SINE B4 -26 139 12 1 1695 300 161 231 0 chr6 145571450 145571535 -3945502 - PB1D10 SINE Alu 0 120 11 1 1695 198 118 0 0 chr6 145571639 145571673 -3945364 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 1 1695 225 0 0 0 chr6 145571704 145571729 -3945308 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1695 775 176 229 0 chr6 145574189 145574359 -3942678 + B3 SINE B2 1 209 -7 1 1695 863 294 24 5 chr6 145574383 145574588 -3942449 + B3 SINE B2 7 215 -1 1 1695 856 267 35 0 chr6 145574761 145574963 -3942074 + ID_B1 SINE B4 8 216 -8 1 1695 2815 286 109 10 chr6 145575034 145576034 -3941003 + Lx8 LINE L1 6303 7401 -72 1 1695 229 197 91 0 chr6 145576180 145576246 -3940791 + RMER15 LTR ERVL 406 477 -98 1 1695 1323 134 67 0 chr6 145577369 145577578 -3939459 - URR1A DNA MER1_type -3 223 1 1 1695 1225 155 9 44 chr6 145577937 145578166 -3938871 + URR1B DNA MER1_type 5 225 0 1 1695 642 214 57 51 chr6 145578274 145578451 -3938586 - B3A SINE B2 -15 183 6 1 1695 22 56 0 0 chr6 145579244 145579280 -3937757 + AT_rich Low_complexity Low_complexity 1 36 0 1 1695 4851 50 2 0 chr6 145579356 145579935 -3937102 + L1_Mus1 LINE L1 5987 6566 -1 1 1695 1244 48 0 0 chr6 145579944 145580091 -3936946 + B1_Mus2 SINE Alu 1 147 0 1 1695 560 53 13 0 chr6 145580099 145580175 -3936862 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 1 1695 663 92 0 0 chr6 145580227 145580336 -3936701 + (TG)n Simple_repeat Simple_repeat 2 110 0 1 1695 631 220 42 8 chr6 145580336 145580455 -3936582 - RSINE1 SINE B4 -41 124 2 1 1695 253 392 13 0 chr6 145580593 145580672 -3936365 - ID4 SINE ID -2 81 2 1 1695 414 0 0 0 chr6 145580698 145580744 -3936293 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1 1695 440 136 227 0 chr6 145580744 145580832 -3936205 - PB1D9 SINE Alu -11 109 2 1 1695 645 294 69 49 chr6 145581343 145581403 -3935634 - B3 SINE B2 -2 214 164 1 1695 297 0 0 0 chr6 145581403 145581436 -3935601 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1695 645 294 69 49 chr6 145581436 145581579 -3935458 - B3 SINE B2 -53 163 8 1 1695 452 279 116 0 chr6 145581738 145581867 -3935170 + RSINE1 SINE B4 1 144 -21 1 1695 354 311 0 0 chr6 145582847 145583024 -3934013 + (CA)n Simple_repeat Simple_repeat 1 177 0 1 1695 517 196 49 76 chr6 145583794 145583938 -3933099 - B1_Mur1 SINE Alu -8 141 2 1 1695 259 196 97 164 chr6 145583821 145583955 -3933082 - MT2B LTR ERVL -325 276 152 1 1695 450 215 55 103 chr6 145584058 145584095 -3932942 + MT2B LTR ERVL 120 198 -403 1 1695 1103 74 0 33 chr6 145584095 145584130 -3932907 + B1_Mus1 SINE Alu 1 35 -113 1 1695 3790 59 10 32 chr6 145584130 145584623 -3932414 - LTRIS_Mm LTR ERV1 0 482 1 1 1695 450 215 55 103 chr6 145584623 145584695 -3932342 + MT2B LTR ERVL 199 257 -344 1 1695 1103 74 0 33 chr6 145584695 145584740 -3932297 + B1_Mus1 SINE Alu 36 148 0 1 1695 1174 164 77 213 chr6 145584747 145585150 -3931887 + ORR1B2 LTR MaLR 13 360 -7 1 1695 519 235 43 61 chr6 145585450 145585613 -3931424 - MTD LTR MaLR -2 417 258 1 1695 262 288 34 51 chr6 145585747 145585864 -3931173 - MTD LTR MaLR -115 292 178 1 1695 309 51 0 0 chr6 145585909 145585948 -3931089 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 1695 642 222 16 0 chr6 145585974 145586100 -3930937 - B3A SINE B2 -69 129 2 1 1695 272 150 0 71 chr6 145586583 145586639 -3930398 - B1_Mus1 SINE Alu -64 56 6 1 1695 451 353 131 18 chr6 145586945 145587288 -3929749 + LTR16C LTR ERVL 12 393 -96 1 1695 240 35 0 0 chr6 145587302 145587331 -3929706 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1 1695 1034 67 0 0 chr6 145587334 145587468 -3929569 - B1_Mm SINE Alu 0 147 14 1 1695 573 228 7 33 chr6 145587468 145587484 -3929553 - ID_B1 SINE B4 0 224 79 1 1695 2156 279 24 37 chr6 145587694 145587733 -3929304 - Lx8 LINE L1 -255 7218 7180 1 1695 1981 161 36 11 chr6 145587733 145588091 -3928946 + ORR1B2 LTR MaLR 1 367 0 1 1695 2156 279 24 37 chr6 145588091 145588751 -3928286 - Lx8 LINE L1 -294 7179 6529 1 1695 238 325 12 24 chr6 145589076 145589161 -3927876 + MTE2b LTR MaLR 272 355 -24 1 1695 315 136 0 0 chr6 145590103 145590162 -3926875 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1695 38690 14 2 7 chr6 145590524 145595937 -3921100 + L1Md_T LINE L1 203 5586 -297 1 1695 8178 55 0 0 chr6 145595937 145596933 -3920104 + L1Md_T LINE L1 5587 6582 0 1 1695 8942 16 0 0 chr6 145596966 145597960 -3919077 + L1Md_A LINE L1 5587 6580 -2 1 1695 818 91 0 8 chr6 145598479 145598601 -3918436 + (TTCC)n Simple_repeat Simple_repeat 2 122 0 1 1695 1020 80 58 0 chr6 145598604 145598742 -3918295 - B1_Mus2 SINE Alu -1 146 1 1 1695 558 230 17 0 chr6 145598789 145598963 -3918074 + CT-rich Low_complexity Low_complexity 1 177 0 1 1695 250 245 8 172 chr6 145599046 145599174 -3917863 + MTEa LTR MaLR 82 188 -191 1 1695 516 237 30 15 chr6 145599368 145599501 -3917536 + MTEa LTR MaLR 243 377 -2 1 1695 210 222 0 0 chr6 145601490 145601535 -3915502 + G-rich Low_complexity Low_complexity 5 49 0 1 1695 342 154 0 0 chr6 145601863 145601941 -3915096 + GA-rich Low_complexity Low_complexity 1 78 0 1 1695 787 222 77 77 chr6 145602159 145602432 -3914605 - B4A SINE B4 -14 278 6 1 1695 213 250 22 70 chr6 145603065 145603250 -3913787 + (CACAC)n Simple_repeat Simple_repeat 4 179 0 1 1695 767 309 105 19 chr6 145603414 145603727 -3913310 - MLT1E2 LTR MaLR -11 616 277 1 1695 288 244 19 28 chr6 145603747 145603972 -3913065 + (TG)n Simple_repeat Simple_repeat 1 222 0 1 1695 180 111 0 0 chr6 145604003 145604030 -3913007 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1 1695 293 128 27 73 chr6 145604076 145604186 -3912851 + (TG)n Simple_repeat Simple_repeat 2 106 0 1 1695 509 296 20 20 chr6 145604265 145604413 -3912624 + B3A SINE B2 4 151 -47 1 1695 297 0 0 0 chr6 145604420 145604453 -3912584 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1695 1182 140 48 34 chr6 145604685 145604892 -3912145 - B3 SINE B2 -6 210 1 1 1695 508 229 105 42 chr6 145605360 145605548 -3911489 - B3A SINE B2 -5 211 9 1 1695 464 257 136 60 chr6 145606117 145606316 -3910721 + RCHARR1 DNA MER1_type 1 214 -760 1 1695 627 14 0 0 chr6 145606701 145606773 -3910264 + (GGGA)n Simple_repeat Simple_repeat 2 73 0 1 1695 350 271 161 0 chr6 145606776 145606894 -3910143 - RSINE1 SINE B4 -25 140 4 1 1695 250 292 55 55 chr6 145607773 145607918 -3909119 + ORR1E LTR MaLR 112 256 -103 1 1695 228 35 0 0 chr6 145608196 145608225 -3908812 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 1 1695 522 163 0 0 chr6 145608227 145608325 -3908712 + CT-rich Low_complexity Low_complexity 3 100 0 1 1695 503 338 35 58 chr6 145608783 145609009 -3908028 + MIR SINE MIR 21 241 -21 1 1695 637 196 210 44 chr6 145609098 145609279 -3907758 + B3 SINE B2 1 211 -5 1 1695 22 0 0 0 chr6 145609289 145609311 -3907726 + AT_rich Low_complexity Low_complexity 1 22 0 1 1695 34 0 0 0 chr6 145610269 145610303 -3906734 + AT_rich Low_complexity Low_complexity 1 34 0 1 1695 864 266 19 15 chr6 145610303 145610344 -3906693 - B3 SINE B2 -8 208 166 1 1695 423 38 0 0 chr6 145610344 145610397 -3906640 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1695 864 266 19 15 chr6 145610397 145610561 -3906476 - B3 SINE B2 -51 165 2 1 1695 27 0 0 0 chr6 145610701 145610728 -3906309 + AT_rich Low_complexity Low_complexity 1 27 0 1 1695 415 211 83 0 chr6 145611231 145611340 -3905697 - Lx9 LINE L1 -37 7607 7490 2 1695 958 147 25 0 chr6 145611469 145611626 -3905411 - Lx9 LINE L1 -186 7458 7298 2 1695 510 209 101 60 chr6 145611883 145612033 -3905004 + B3A SINE B2 14 176 -22 2 1695 501 88 0 0 chr6 145612033 145612113 -3904924 + (CAGA)n Simple_repeat Simple_repeat 2 81 0 2 1695 497 209 101 60 chr6 145612113 145612130 -3904907 + B3 SINE B2 175 188 -28 2 1695 674 138 34 8 chr6 145612135 145612252 -3904785 + PB1D9 SINE Alu 1 120 0 2 1695 240 163 0 0 chr6 145612683 145612726 -3904311 + GA-rich Low_complexity Low_complexity 3 45 0 2 1695 1357 87 16 16 chr6 145613297 145613484 -3903553 + B2_Mm2 SINE B2 2 188 -7 2 1695 446 271 95 33 chr6 145613574 145613784 -3903253 + B4A SINE B4 2 224 -68 2 1695 563 278 93 16 chr6 145614380 145614574 -3902463 + B3 SINE B2 6 214 -2 2 1695 520 196 110 22 chr6 145615120 145615256 -3901781 - B1F1 SINE Alu -1 148 1 2 1695 2138 140 75 21 chr6 145615890 145616263 -3900774 - ORR1B1 LTR MaLR 0 394 2 2 1695 185 320 26 13 chr6 145617358 145617434 -3899603 + L2a LINE L2 2665 2741 -678 2 1695 186 43 0 0 chr6 145617611 145617634 -3899403 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1695 279 255 6 12 chr6 145617701 145617868 -3899169 + (TG)n Simple_repeat Simple_repeat 1 166 0 2 1695 22 0 0 0 chr6 145617950 145617972 -3899065 + AT_rich Low_complexity Low_complexity 1 22 0 2 1695 183 371 135 0 chr6 145618028 145618117 -3898920 + L2a LINE L2 3279 3379 -47 2 1695 640 96 63 8 chr6 145619194 145619451 -3897586 + (TAGA)n Simple_repeat Simple_repeat 1 271 0 2 1695 363 224 106 53 chr6 145620330 145620481 -3896556 - RSINE1 SINE B4 -2 163 5 2 1695 751 234 46 0 chr6 145620526 145620701 -3896336 - B3 SINE B2 -17 199 17 2 1696 422 217 341 26 chr6 145621556 145621747 -3895290 + B4 SINE B4 40 290 -2 2 1696 198 0 0 0 chr6 145621821 145621843 -3895194 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1696 563 176 8 0 chr6 145621872 145621997 -3895040 + (CA)n Simple_repeat Simple_repeat 1 126 0 2 1696 246 279 29 0 chr6 145622000 145622068 -3894969 + L1MDa LINE L1 300 369 -6264 2 1696 259 304 59 0 chr6 145622568 145622670 -3894367 + L1MDa LINE L1 1124 1231 -5309 2 1696 369 285 174 21 chr6 145622766 145622891 -3894146 + L1MDa LINE L1 1336 1480 -5153 2 1696 1107 109 0 0 chr6 145622891 145623056 -3893981 + (CAGG)n Simple_repeat Simple_repeat 3 167 0 2 1696 369 285 174 21 chr6 145623056 145623120 -3893917 + L1MDa LINE L1 1481 1554 -5079 2 1696 1226 35 14 0 chr6 145623161 145623306 -3893731 + B1_Mus1 SINE Alu 2 148 0 2 1696 216 111 0 0 chr6 145623306 145623342 -3893695 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 2 1696 508 296 70 56 chr6 145623496 145623854 -3893183 + L1MB8 LINE L1 5812 6174 -4 2 1696 21 0 0 0 chr6 145624061 145624082 -3892955 + AT_rich Low_complexity Low_complexity 1 21 0 2 1696 627 190 313 0 chr6 145624101 145624264 -3892773 - B3 SINE B2 -1 215 2 2 1696 321 192 0 0 chr6 145624682 145624734 -3892303 + MTE2a LTR MaLR 1 52 -327 2 1696 963 189 96 10 chr6 145624765 145624973 -3892064 + URR1A DNA MER1_type 1 226 0 2 1696 687 25 0 0 chr6 145625195 145625276 -3891761 + (GA)n Simple_repeat Simple_repeat 1 81 0 2 1696 2451 75 28 0 chr6 145625386 145625704 -3891333 - ORR1A2 LTR MaLR 0 327 1 2 1696 284 0 0 27 chr6 145625808 145625845 -3891192 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 2 1696 788 236 58 0 chr6 145625845 145626036 -3891001 - Lx8 LINE L1 -141 7332 7131 2 1696 218 225 26 66 chr6 145626053 145626129 -3890908 + PB1D10 SINE Alu 30 102 -15 2 1696 186 103 0 0 chr6 145626823 145626852 -3890185 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 2 1696 464 286 78 28 chr6 145627044 145627224 -3889813 - B3A SINE B2 -1 197 9 2 1696 226 138 17 17 chr6 145628485 145628544 -3888493 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1696 199 322 167 33 chr6 145628637 145628852 -3888185 + L2 LINE L2 2233 2476 -943 2 1696 597 220 124 75 chr6 145629023 145629224 -3887813 - B3 SINE B2 -4 212 2 2 1696 655 337 72 70 chr6 145629495 145629737 -3887300 + LTR40a LTR ERVL 1 247 -272 2 1696 878 178 13 92 chr6 145629737 145629966 -3887071 + B3 SINE B2 1 211 -5 2 1696 655 337 72 70 chr6 145629966 145630237 -3886800 + LTR40a LTR ERVL 248 515 -4 2 1696 872 244 150 15 chr6 145630440 145630706 -3886331 - ORR1D2 LTR MaLR -31 339 38 2 1696 642 72 0 0 chr6 145631352 145631449 -3885588 + (CA)n Simple_repeat Simple_repeat 1 97 0 2 1696 605 245 6 55 chr6 145632040 145632204 -3884833 + RMER13A LTR ERVK 96 251 -609 2 1696 214 194 0 0 chr6 145632286 145632322 -3884715 + (TTG)n Simple_repeat Simple_repeat 3 38 0 2 1696 375 23 0 0 chr6 145632328 145632372 -3884665 + (TGG)n Simple_repeat Simple_repeat 1 44 0 2 1696 375 41 0 0 chr6 145632525 145632574 -3884463 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1696 1099 70 153 0 chr6 145633368 145633525 -3883512 - B2_Mm2 SINE B2 -14 181 1 2 1696 526 246 66 0 chr6 145634087 145634209 -3882828 - MTEa LTR MaLR -237 142 13 2 1696 717 169 69 0 chr6 145634553 145634683 -3882354 - B1_Mur2 SINE Alu -6 143 5 2 1696 355 221 87 105 chr6 145634580 145634752 -3882285 - MT2B LTR ERVL -333 268 100 2 1696 409 266 64 87 chr6 145634683 145634722 -3882315 - B4 SINE B4 -68 220 56 2 1696 797 205 6 43 chr6 145635048 145635211 -3881826 + RSINE1 SINE B4 3 159 -6 2 1696 182 37 37 0 chr6 145635902 145635929 -3881108 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1696 360 111 37 0 chr6 145636234 145636315 -3880722 + (TC)n Simple_repeat Simple_repeat 1 84 0 2 1696 265 326 11 11 chr6 145636669 145636762 -3880275 - MIR SINE MIR -70 192 100 2 1696 499 262 69 38 chr6 145636768 145636899 -3880138 + RSINE1 SINE B4 1 135 -30 2 1696 360 0 0 0 chr6 145636912 145636952 -3880085 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1696 452 252 0 25 chr6 145638269 145638387 -3878650 - PB1D10 SINE Alu -1 116 2 2 1696 2918 30 9 0 chr6 145638427 145638760 -3878277 - L1Md_F3 LINE L1 -200 6382 6047 2 1696 1092 58 26 6 chr6 145638760 145638916 -3878121 + L1Md_F3 LINE L1 6426 6584 0 2 1696 325 327 132 17 chr6 145639287 145639461 -3877576 - B3 SINE B2 -13 203 10 2 1696 667 296 33 0 chr6 145639313 145639465 -3877572 - RSINE1 SINE B4 -2 163 7 2 1696 448 202 22 22 chr6 145639510 145639601 -3877436 - RSINE1 SINE B4 -19 146 56 2 1696 355 282 35 52 chr6 145639962 145640078 -3876959 + RSINE1 SINE B4 13 126 -39 2 1696 489 47 0 0 chr6 145640110 145640174 -3876863 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1696 899 169 6 0 chr6 145640995 145641172 -3875865 + CT-rich Low_complexity Low_complexity 2 179 0 2 1696 394 276 9 0 chr6 145641213 145641329 -3875708 - PB1D10 SINE Alu 0 117 1 2 1696 233 277 0 58 chr6 145641356 145641425 -3875612 + tRNA-Ala-GCA tRNA tRNA 3 67 -8 2 1696 5638 68 35 1 chr6 145641550 145642292 -3874745 - L1_Mus3 LINE L1 -5 6633 5867 2 1696 2036 94 36 0 chr6 145642294 145642570 -3874467 + L1_Mus3 LINE L1 5525 5810 -73 2 1696 405 0 0 0 chr6 145642690 145642735 -3874302 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1696 552 239 17 122 chr6 145642838 145643019 -3874018 + B3A SINE B2 55 216 0 2 1696 341 227 20 129 chr6 145643039 145643140 -3873897 + PB1D10 SINE Alu 11 100 -17 2 1696 489 34 0 0 chr6 145643181 145643240 -3873797 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1696 1212 221 102 25 chr6 145644000 145644325 -3872712 + ORR1E LTR MaLR 4 353 -6 2 1696 189 0 0 0 chr6 145645888 145645909 -3871128 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1696 1524 286 116 64 chr6 145645909 145646567 -3870470 + L1MA6 LINE L1 5103 5829 -471 2 1696 348 94 0 0 chr6 145646567 145646620 -3870417 + (TTG)n Simple_repeat Simple_repeat 2 54 0 2 1696 1524 283 68 77 chr6 145646620 145646878 -3870159 + L1MA6 LINE L1 5830 6099 -201 2 1696 745 293 9 26 chr6 145646878 145647106 -3869931 + ID_B1 SINE B4 1 224 0 2 1696 1524 283 68 77 chr6 145647106 145647159 -3869878 + L1MA6 LINE L1 6100 6148 -152 2 1696 6508 44 26 19 chr6 145647159 145647965 -3869072 + L1_Mus1 LINE L1 5750 6561 -6 2 1696 1524 283 68 77 chr6 145647965 145648136 -3868901 + L1MA6 LINE L1 6149 6287 -13 2 1696 357 215 23 23 chr6 145648901 145649077 -3867960 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 2 1696 413 350 50 21 chr6 145650046 145650288 -3866749 + MIR SINE MIR 2 250 -12 2 1696 1261 227 93 31 chr6 145650607 145650981 -3866056 + MTD LTR MaLR 8 404 -15 2 1696 361 202 47 23 chr6 145651530 145651616 -3865421 + RLTR23 LTR ERV1 339 426 -4 2 1696 225 222 0 0 chr6 145652112 145652157 -3864880 - L3 LINE CR1 -1 4488 4444 2 1696 351 65 0 0 chr6 145652758 145652804 -3864233 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1696 582 272 106 15 chr6 145652840 145653038 -3863999 - B4A SINE B4 -68 224 9 2 1696 612 303 8 0 chr6 145653289 145653421 -3863616 - RSINE1 SINE B4 -17 148 16 2 1696 2275 96 48 0 chr6 145653659 145653971 -3863066 + ORR1A2 LTR MaLR 1 327 0 2 1696 802 218 0 26 chr6 145654406 145654557 -3862480 - B1_Mur1 SINE Alu 0 149 3 2 1696 529 225 32 24 chr6 145654558 145654681 -3862356 - B1F SINE Alu -2 147 24 2 1696 238 200 0 22 chr6 145655256 145655302 -3861735 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1696 1016 262 83 46 chr6 145655400 145655772 -3861265 - Lx8 LINE L1 -5 7468 7083 2 1696 217 283 58 104 chr6 145655772 145655926 -3861111 + B1_Mur1 SINE Alu 3 149 0 2 1696 647 279 107 58 chr6 145656129 145656475 -3860562 + ORR1D2 LTR MaLR 5 367 -3 2 1696 818 207 3 6 chr6 145656820 145657135 -3859902 + CT-rich Low_complexity Low_complexity 1 313 0 2 1696 448 259 54 0 chr6 145657144 145657256 -3859781 - PB1D9 SINE Alu -1 119 2 2 1696 435 262 27 45 chr6 145657443 145657555 -3859482 - RSINE1 SINE B4 -12 153 44 2 1696 2281 94 0 19 chr6 145657781 145658097 -3858940 - RLTR10E LTR ERVK 0 311 2 2 1696 701 236 51 0 chr6 145658153 145658310 -3858727 - B4 SINE B4 -126 166 2 2 1696 2440 164 44 28 chr6 145658967 145659464 -3857573 + RLTR16 LTR ERVK 1 505 0 2 1696 313 262 0 12 chr6 145660223 145660304 -3856733 - ID4_ SINE ID -2 81 2 2 1696 735 165 17 0 chr6 145660548 145660724 -3856313 + (CCA)n Simple_repeat Simple_repeat 2 180 0 3 1696 2253 88 21 59 chr6 145661047 145661386 -3855651 + ORR1A3 LTR MaLR 1 326 0 3 1696 23 33 0 0 chr6 145661392 145661422 -3855615 + AT_rich Low_complexity Low_complexity 1 30 0 3 1696 463 280 141 95 chr6 145663653 145663937 -3853100 - ORR1E LTR MaLR -61 298 2 3 1696 1485 53 21 5 chr6 145663988 145664176 -3852861 + B2_Mm2 SINE B2 2 192 -3 3 1696 740 193 138 6 chr6 145664304 145664471 -3852566 + B3A SINE B2 2 190 -8 3 1696 294 95 0 0 chr6 145665203 145665245 -3851792 + (TCTG)n Simple_repeat Simple_repeat 4 45 0 3 1696 480 333 62 15 chr6 145665358 145665632 -3851405 + B4A SINE B4 2 288 -4 3 1696 221 333 45 0 chr6 145665927 145665993 -3851044 + B3 SINE B2 84 152 -64 3 1696 995 200 19 10 chr6 145666103 145666310 -3850727 - B3 SINE B2 -1 215 7 3 1696 298 226 11 35 chr6 145666343 145666430 -3850607 + L1MC4 LINE L1 7207 7291 -751 3 1696 320 0 0 24 chr6 145666854 145666895 -3850142 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1696 1138 59 0 0 chr6 145666895 145667031 -3850006 - B1_Mus2 SINE Alu -10 137 2 3 1696 521 305 49 67 chr6 145667146 145667413 -3849624 + B4A SINE B4 31 292 0 3 1696 312 246 17 7 chr6 145667446 145667868 -3849169 + (CA)n Simple_repeat Simple_repeat 1 426 0 3 1696 340 174 68 55 chr6 145667906 145667979 -3849058 + HAL1-3A_ME LINE L1 1974 2047 -811 3 1696 1415 243 53 22 chr6 145668021 145668379 -3848658 + ORR1D2 LTR MaLR 1 369 -1 3 1696 453 212 116 62 chr6 145668745 145668891 -3848146 + B3A SINE B2 43 196 -2 3 1696 610 250 99 65 chr6 145668927 145669128 -3847909 + B3 SINE B2 4 211 -5 3 1696 1107 236 66 25 chr6 145669383 145669700 -3847337 + MTE2b LTR MaLR 38 367 -12 3 1696 766 245 81 27 chr6 145670271 145670531 -3846506 + B4 SINE B4 4 277 -15 3 1696 273 322 29 9 chr6 145670844 145670957 -3846080 - B1F1 SINE Alu -1 116 2 3 1696 515 322 89 8 chr6 145671191 145671438 -3845599 + LTR79 LTR ERVL 216 482 -45 3 1696 1014 216 114 93 chr6 145671670 145672037 -3845000 + MTE2a LTR MaLR 5 379 0 3 1696 481 279 121 6 chr6 145672117 145672283 -3844754 + MER5A DNA MER1_type 2 186 -3 3 1696 240 35 0 0 chr6 145672515 145672544 -3844493 + (TTTTTG)n Simple_repeat Simple_repeat 4 32 0 3 1696 302 299 54 23 chr6 145672768 145672806 -3844231 + ORR1A3-int LTR MaLR 572 613 -1350 3 1696 1508 17 0 0 chr6 145672806 145672980 -3844057 + MT2C_Mm LTR ERVL 1 174 -301 3 1696 4980 69 8 3 chr6 145672980 145673649 -3843388 + MT-int LTR MaLR 1 672 -426 3 1696 3125 32 3 3 chr6 145673655 145674029 -3843008 + MTA_Mm LTR MaLR 23 396 0 3 1696 882 232 114 135 chr6 145674825 145675203 -3841834 + MTEa LTR MaLR 3 372 -7 3 1696 900 229 67 0 chr6 145675480 145675690 -3841347 + URR1B DNA MER1_type 1 224 -1 3 1696 229 314 0 10 chr6 145675910 145676013 -3841024 + C-rich Low_complexity Low_complexity 5 106 0 3 1696 216 0 0 0 chr6 145676086 145676110 -3840927 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 3 1696 573 229 71 90 chr6 145676198 145676293 -3840744 - B3 SINE B2 -9 207 118 3 1696 432 0 0 0 chr6 145676293 145676341 -3840696 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1696 573 229 71 90 chr6 145676341 145676456 -3840581 - B3 SINE B2 -99 117 1 3 1696 353 280 20 20 chr6 145676458 145676560 -3840477 - ID_B1 SINE B4 -9 215 114 3 1696 194 62 31 0 chr6 145676821 145676853 -3840184 + (CCCCCA)n Simple_repeat Simple_repeat 3 35 0 3 1696 246 306 64 64 chr6 145677057 145677214 -3839823 - Cheshire DNA MER1_type -2160 260 104 3 1696 1244 130 22 0 chr6 145677234 145677419 -3839618 + B2_Mm2 SINE B2 2 190 -5 3 1696 472 294 0 84 chr6 145677698 145677865 -3839172 + B4A SINE B4 1 153 -139 3 1696 601 274 30 0 chr6 145677899 145678034 -3839003 + RSINE1 SINE B4 25 163 -2 3 1696 21 0 0 0 chr6 145678370 145678391 -3838646 + AT_rich Low_complexity Low_complexity 1 21 0 3 1696 2359 66 46 0 chr6 145678575 145678878 -3838159 + L1_Mus1 LINE L1 6250 6566 -1 3 1696 31 0 0 0 chr6 145678913 145678944 -3838093 + AT_rich Low_complexity Low_complexity 1 31 0 3 1696 544 283 25 25 chr6 145678977 145679140 -3837897 - RSINE1 SINE B4 0 165 3 3 1696 727 253 0 70 chr6 145679571 145679758 -3837279 - B3A SINE B2 0 198 25 3 1696 421 290 90 28 chr6 145680107 145680307 -3836730 + L1MA6 LINE L1 6079 6300 0 3 1696 1167 244 213 35 chr6 145681202 145681775 -3835262 + Lx8 LINE L1 6782 7456 -17 3 1696 189 107 0 0 chr6 145681786 145681814 -3835223 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1696 701 217 48 122 chr6 145682912 145682926 -3834111 - B3 SINE B2 -41 175 165 3 1696 468 0 0 0 chr6 145682926 145682978 -3834059 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1696 701 217 48 122 chr6 145682978 145683152 -3833885 - B3 SINE B2 -52 164 1 3 1696 1239 268 18 30 chr6 145684722 145685053 -3831984 + MTEa LTR MaLR 37 363 -16 3 1696 183 297 46 99 chr6 145685402 145685533 -3831504 - L2b LINE L2 -1 3374 3251 3 1696 401 212 236 31 chr6 145686356 145686383 -3830654 - B3A SINE B2 -4 194 169 3 1696 357 82 0 0 chr6 145686383 145686432 -3830605 + (TATG)n Simple_repeat Simple_repeat 2 50 0 3 1696 401 212 236 31 chr6 145686432 145686565 -3830472 - B3A SINE B2 -30 168 1 3 1696 609 167 239 6 chr6 145687126 145687289 -3829748 - RMER15 LTR ERVL -19 556 356 3 1696 332 260 177 22 chr6 145687925 145688106 -3828931 - Tigger14a DNA MER2_type -94 230 22 3 1696 21 0 0 0 chr6 145688340 145688361 -3828676 + AT_rich Low_complexity Low_complexity 1 21 0 3 1696 792 217 0 0 chr6 145688530 145688673 -3828364 - B1_Mur1 SINE Alu -5 144 2 3 1696 410 342 26 0 chr6 145689070 145689184 -3827853 + ID_B1 SINE B4 26 142 -82 3 1696 1292 160 72 65 chr6 145689798 145690162 -3826875 + RMER16 LTR ERVK 1 533 0 3 1696 534 281 30 35 chr6 145690267 145690466 -3826571 - B3A SINE B2 0 198 1 3 1696 1448 231 87 24 chr6 145691150 145691531 -3825506 + MTD LTR MaLR 1 405 -14 3 1696 480 252 18 14 chr6 145691712 145691852 -3825185 + MLT1D LTR MaLR 320 499 -6 3 1696 375 223 53 11 chr6 145694117 145694212 -3822825 - B1F SINE Alu 0 149 51 3 1696 414 0 0 0 chr6 145694212 145694258 -3822779 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1696 282 276 0 75 chr6 145694909 145695154 -3821883 + C-rich Low_complexity Low_complexity 1 226 0 3 1696 228 297 17 46 chr6 145695216 145695389 -3821648 + (CCCCG)n Simple_repeat Simple_repeat 5 172 0 3 1696 214 172 20 51 chr6 145695325 145695423 -3821614 + (CCG)n Simple_repeat Simple_repeat 2 96 0 3 1696 27 0 0 0 chr6 145695500 145695527 -3821510 + GC_rich Low_complexity Low_complexity 1 27 0 3 1696 333 68 0 0 chr6 145696341 145696385 -3820652 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1696 180 0 0 0 chr6 145696552 145696572 -3820465 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 3 1696 477 156 93 10 chr6 145698593 145698690 -3818347 - B1_Mur3 SINE Alu -22 127 23 3 1696 277 344 61 18 chr6 145700186 145700349 -3816688 - RLTR21 LTR ERVK -319 1253 1084 3 1696 216 0 0 0 chr6 145700503 145700527 -3816510 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1696 1111 63 0 14 chr6 145700531 145700675 -3816362 - B1_Mm SINE Alu -5 142 1 3 1696 30 27 0 0 chr6 145700678 145700715 -3816322 + AT_rich Low_complexity Low_complexity 1 37 0 3 1696 307 321 105 37 chr6 145701119 145701310 -3815727 - L1ME1 LINE L1 -63 6116 5913 3 1696 211 293 64 39 chr6 145701382 145701460 -3815577 + ID4_ SINE ID 1 80 -3 3 1696 359 261 67 34 chr6 145701432 145701551 -3815486 + ID_B1 SINE B4 102 224 0 3 1696 265 172 17 17 chr6 145701641 145701700 -3815337 - L1MD LINE L1 -638 5604 5546 3 1696 1121 210 5 0 chr6 145701965 145702179 -3814858 - B3 SINE B2 0 216 2 3 1696 451 317 80 57 chr6 145702206 145702644 -3814393 - L1ME1 LINE L1 -855 5291 4844 3 1696 228 245 0 0 chr6 145702915 145702964 -3814073 + T-rich Low_complexity Low_complexity 3 51 0 3 1696 523 190 19 29 chr6 145703187 145703290 -3813747 + B1_Mur1 SINE Alu 46 147 -2 3 1696 319 319 12 0 chr6 145705839 145705947 -3811090 - ID4_ SINE ID -42 110 2 3 1696 377 294 137 68 chr6 145706433 145706725 -3810312 + MLT1A0 LTR MaLR 54 365 0 3 1696 254 376 58 52 chr6 145708119 145708178 -3808859 + ID_B1 SINE B4 26 217 -7 3 1696 353 318 61 0 chr6 145708178 145708310 -3808727 + B1F1 SINE Alu 3 142 -7 3 1696 250 227 29 57 chr6 145708319 145708389 -3808648 + ID4 SINE ID 2 69 -14 3 1696 231 292 120 40 chr6 145709707 145709832 -3807205 - B1_Mus2 SINE Alu -3 144 10 3 1696 812 92 92 0 chr6 145709998 145710118 -3806919 - B1_Mur3 SINE Alu 0 149 19 3 1696 24 0 0 0 chr6 145710509 145710533 -3806504 + AT_rich Low_complexity Low_complexity 1 24 0 3 1696 180 0 0 0 chr6 145710541 145710561 -3806476 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1696 249 367 0 0 chr6 145710585 145710675 -3806362 + (TG)n Simple_repeat Simple_repeat 1 90 0 3 1696 320 291 54 65 chr6 145710675 145710859 -3806178 - B3A SINE B2 -16 182 1 3 1696 193 259 64 96 chr6 145710968 145711062 -3805975 - MIRb SINE MIR -161 107 17 3 1696 577 250 134 0 chr6 145711139 145711303 -3805734 - ORR1E LTR MaLR -171 188 3 3 1696 189 246 65 60 chr6 145711499 145711612 -3805425 + MIRb SINE MIR 2 127 -141 3 1696 253 45 21 62 chr6 145712883 145712931 -3804106 + (CTGTG)n Simple_repeat Simple_repeat 1 46 0 3 1696 999 133 61 0 chr6 145714103 145714268 -3802769 - URR1B DNA MER1_type -1 224 50 3 1696 401 331 71 56 chr6 145714768 145714913 -3802124 - Lx8 LINE L1 -2 7471 7333 4 1696 186 43 0 0 chr6 145714913 145714936 -3802101 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 1696 492 306 48 118 chr6 145714936 145715155 -3801882 - Lx9 LINE L1 -189 7455 7227 4 1696 285 29 0 0 chr6 145715155 145715189 -3801848 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1696 492 306 48 118 chr6 145715189 145715528 -3801509 - Lx9 LINE L1 -418 7226 6937 4 1696 662 258 0 25 chr6 145716681 145716844 -3800193 + RSINE1 SINE B4 2 160 -5 4 1696 201 196 0 0 chr6 145716851 145716897 -3800140 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1696 3775 82 32 2 chr6 145719779 145720308 -3796729 - Lx3_Mus LINE L1 -1 7008 6464 4 1696 6403 61 21 7 chr6 145720308 145721151 -3795886 + Lx3_Mus LINE L1 5613 6467 -542 4 1696 1378 99 16 0 chr6 145721163 145721354 -3795683 - B2_Mm2 SINE B2 -1 194 1 4 1696 773 281 24 10 chr6 145721663 145721871 -3795166 - B3 SINE B2 -4 212 2 4 1696 474 228 0 32 chr6 145723217 145723403 -3793634 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1696 258 269 0 29 chr6 145723403 145723472 -3793565 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 4 1696 351 267 68 8 chr6 145723473 145723605 -3793432 + L1MA4A LINE L1 5776 5915 -388 4 1696 241 282 51 13 chr6 145724212 145724291 -3792746 - MLT1A1 LTR MaLR -4 404 323 4 1696 1114 95 0 26 chr6 145724305 145724457 -3792580 - B1_Mus1 SINE Alu 0 148 1 4 1696 309 159 0 0 chr6 145725762 145725825 -3791212 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1696 244 158 35 0 chr6 145725906 145725963 -3791074 + CT-rich Low_complexity Low_complexity 4 62 0 4 1696 23 0 0 0 chr6 145726195 145726218 -3790819 + AT_rich Low_complexity Low_complexity 1 23 0 4 1696 587 279 59 0 chr6 145728280 145728484 -3788553 - RCHARR1 DNA MER1_type -2 972 757 4 1696 303 286 92 0 chr6 145728519 145728617 -3788420 - RCHARR1 DNA MER1_type -547 427 321 4 1696 497 16 16 0 chr6 145728656 145728718 -3788319 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1696 661 296 30 15 chr6 145728718 145728917 -3788120 - RCHARR1 DNA MER1_type -766 208 7 4 1696 799 295 78 0 chr6 145729244 145729502 -3787535 + MLT1A0 LTR MaLR 66 343 -22 4 1696 406 271 90 36 chr6 145729610 145729721 -3787316 - RSINE1 SINE B4 -42 123 7 4 1696 232 294 270 11 chr6 145729771 145729960 -3787077 + MIR SINE MIR 3 240 -22 4 1696 243 88 0 0 chr6 145730034 145730068 -3786969 + (TGAG)n Simple_repeat Simple_repeat 3 36 0 4 1696 50 65 0 0 chr6 145731809 145731901 -3785136 + AT_rich Low_complexity Low_complexity 1 92 0 4 1696 248 201 0 84 chr6 145733093 145733283 -3783754 + (CAGTA)n Simple_repeat Simple_repeat 5 178 0 4 1696 200 214 5 89 chr6 145734153 145734343 -3782694 + (CAGTA)n Simple_repeat Simple_repeat 5 178 0 4 1696 402 57 0 0 chr6 145735703 145735756 -3781281 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1696 22 0 0 0 chr6 145737892 145737914 -3779123 + AT_rich Low_complexity Low_complexity 1 22 0 4 1696 481 199 151 103 chr6 145737979 145738164 -3778873 + B3A SINE B2 1 194 -4 4 1696 315 271 105 16 chr6 145738741 145738932 -3778105 + L1M4 LINE L1 4315 4522 -1624 4 1696 449 312 194 11 chr6 145738942 145739221 -3777816 + L1M4 LINE L1 4927 5256 -890 4 1696 21 0 0 0 chr6 145739371 145739392 -3777645 + AT_rich Low_complexity Low_complexity 1 21 0 4 1696 1154 58 0 0 chr6 145739395 145739534 -3777503 + B1_Mus1 SINE Alu 1 139 -9 4 1696 208 0 62 0 chr6 145739534 145739566 -3777471 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1696 254 191 0 0 chr6 145739630 145739672 -3777365 + L1M4 LINE L1 5552 5593 -585 4 1696 227 325 12 0 chr6 145739814 145739897 -3777140 + L1M2 LINE L1 5833 5916 -396 4 1696 609 203 52 8 chr6 145743384 145743531 -3773506 - B3A SINE B2 -54 141 1 4 1696 475 165 31 102 chr6 145744564 145744692 -3772345 - PB1D9 SINE Alu -1 119 1 4 1696 469 252 116 118 chr6 145745210 145745556 -3771481 - MTEb LTR MaLR -9 370 26 4 1696 180 0 0 0 chr6 145745824 145745844 -3771193 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1696 1202 48 14 0 chr6 145745844 145745989 -3771048 - B1_Mus2 SINE Alu 0 147 1 4 1696 225 218 4 85 chr6 145745995 145746062 -3770975 - B1_Mur2 SINE Alu -5 145 85 4 1696 448 68 14 14 chr6 145746277 145746351 -3770686 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1696 356 264 201 28 chr6 145746365 145746579 -3770458 - B4A SINE B4 -41 251 1 4 1696 255 122 0 0 chr6 145746886 145746935 -3770102 + (G)n Simple_repeat Simple_repeat 1 49 0 4 1696 7815 143 57 19 chr6 145747895 145749275 -3767762 - Lx5 LINE L1 0 7050 5650 4 26 229 192 244 0 chr6 145752025 145752103 -3764934 + MIRc SINE MIR 71 167 -101 4 1697 189 0 0 0 chr6 145752132 145752153 -3764884 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 4 1697 285 302 114 24 chr6 145753530 145753696 -3763341 - B3A SINE B2 -16 182 2 4 1697 610 228 89 0 chr6 145754013 145754136 -3762901 + RSINE1 SINE B4 2 135 -30 4 1697 252 0 0 0 chr6 145754141 145754169 -3762868 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1697 331 266 167 24 chr6 145754768 145755055 -3761982 + MTEa LTR MaLR 15 356 -23 4 1697 270 0 0 0 chr6 145755964 145755994 -3761043 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 4 1697 330 121 0 0 chr6 145757145 145757211 -3759826 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1697 254 206 0 16 chr6 145757331 145757395 -3759642 + G-rich Low_complexity Low_complexity 2 64 0 4 1697 570 300 48 32 chr6 145757405 145757591 -3759446 - ORR1E LTR MaLR -170 189 1 4 1697 2430 308 85 92 chr6 145757591 145757988 -3759049 - ORR1E-int LTR MaLR -53 1527 1129 4 1697 324 0 0 0 chr6 145757988 145758024 -3759013 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1697 2430 308 85 92 chr6 145758024 145759137 -3757900 - ORR1E-int LTR MaLR -452 1128 27 4 1697 1623 154 54 37 chr6 145759290 145759586 -3757451 - ORR1C2 LTR MaLR -83 301 1 4 1697 189 0 0 0 chr6 145760232 145760253 -3756784 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1697 563 254 7 36 chr6 145760357 145760496 -3756541 - ID_B1 SINE B4 -8 216 82 4 1697 1060 71 43 0 chr6 145761097 145761237 -3755800 + B1_Mus1 SINE Alu 3 148 0 4 1697 943 170 70 21 chr6 145761319 145761505 -3755532 - B2_Mm2 SINE B2 0 195 1 4 1697 207 0 0 0 chr6 145761548 145761571 -3755466 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1697 237 308 47 19 chr6 145761591 145761697 -3755340 - PB1D10 SINE Alu -6 111 3 4 1697 441 0 0 0 chr6 145762387 145762436 -3754601 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1697 303 239 193 0 chr6 145762786 145762874 -3754163 - RSINE1 SINE B4 -58 107 3 4 1697 572 254 0 0 chr6 145767562 145767696 -3749341 + B1F SINE Alu 1 134 -15 4 1697 210 37 0 0 chr6 145769698 145769725 -3747312 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1697 314 315 217 0 chr6 145769872 145770015 -3747022 + B4A SINE B4 103 276 -16 4 1697 466 285 97 17 chr6 145770736 145770911 -3746126 + ORR1E LTR MaLR 27 215 -144 4 1697 303 157 44 11 chr6 145771297 145771387 -3745650 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 1697 770 170 7 36 chr6 145771387 145771527 -3745510 - B3 SINE B2 -5 211 76 4 1697 1083 271 47 30 chr6 145773916 145774216 -3742821 + ORR1E LTR MaLR 11 315 -44 4 1697 287 338 32 39 chr6 145774620 145774669 -3742368 + ID_B1 SINE B4 72 224 0 4 1697 307 305 76 0 chr6 145774669 145774774 -3742263 + B1F SINE Alu 37 149 0 4 1697 408 279 19 0 chr6 145774776 145774880 -3742157 + BC1_Mm scRNA scRNA 1 106 -46 4 1697 235 326 54 0 chr6 145774892 145774984 -3742053 + PB1D10 SINE Alu 5 101 -16 4 1697 273 289 165 0 chr6 145775074 145775195 -3741842 + L1MEc LINE L1 1727 1867 -4533 4 1697 293 181 69 46 chr6 145775394 145775568 -3741469 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 4 1697 28 29 0 0 chr6 145775632 145775667 -3741370 + AT_rich Low_complexity Low_complexity 1 35 0 4 1697 258 327 83 18 chr6 145775747 145775856 -3741181 - MLT2B1 LTR ERVL -57 510 395 4 1697 233 333 68 23 chr6 145776133 145776265 -3740772 + MTE2a LTR MaLR 229 366 -13 4 1697 973 281 137 10 chr6 145776632 145776938 -3740099 + MTE2b LTR MaLR 1 345 -34 4 1697 432 0 0 0 chr6 145777435 145777483 -3739554 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 4 1697 441 365 72 17 chr6 145777795 145778032 -3739005 + MER45B DNA Tip100 12 261 -779 4 1697 21 0 0 0 chr6 145778315 145778336 -3738701 + AT_rich Low_complexity Low_complexity 1 21 0 4 1697 549 110 0 0 chr6 145778484 145778566 -3738471 + (GGGAGA)n Simple_repeat Simple_repeat 2 83 0 4 1697 213 39 0 0 chr6 145778591 145778617 -3738420 + (CAGG)n Simple_repeat Simple_repeat 2 27 0 4 1697 180 111 0 0 chr6 145779105 145779132 -3737905 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1697 1172 252 104 7 chr6 145779299 145779634 -3737403 - MTEa LTR MaLR 0 379 1 4 1697 197 98 24 0 chr6 145780066 145780107 -3736930 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 4 1697 512 268 119 17 chr6 145780122 145780469 -3736568 + L1MA7 LINE L1 5475 5873 -418 4 1697 185 0 0 39 chr6 145780469 145780495 -3736542 + (TAA)n Simple_repeat Simple_repeat 1 25 0 4 1697 512 278 132 21 chr6 145780495 145780530 -3736507 + L1MA7 LINE L1 5874 5922 -369 4 1697 753 196 0 0 chr6 145780536 145780790 -3736247 + (TG)n Simple_repeat Simple_repeat 1 254 0 4 1697 317 290 40 0 chr6 145781319 145781419 -3735618 + MER20B DNA MER1_type 257 360 -423 4 1697 339 236 142 31 chr6 145781948 145782075 -3734962 - B1F1 SINE Alu -7 142 2 4 1697 204 74 0 0 chr6 145782106 145782133 -3734904 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1697 599 103 33 54 chr6 145782133 145782317 -3734720 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1697 5422 44 3 9 chr6 145782444 145783116 -3733921 - L1Md_F3 LINE L1 -1 6583 5916 4 1697 808 206 7 0 chr6 145783269 145783415 -3733622 + B1F2 SINE Alu 1 147 -2 4 1697 194 279 72 14 chr6 145784309 145784378 -3732659 - MIR SINE MIR -101 107 35 4 1697 239 279 0 42 chr6 145784557 145784628 -3732409 + LTR89 LTR ERVL? 21 88 -791 4 1697 480 270 98 25 chr6 145784963 145785126 -3731911 + MLT1A0 LTR MaLR 3 177 -188 5 1697 676 293 83 43 chr6 145785392 145785670 -3731367 + B4A SINE B4 2 290 -2 5 1697 234 254 27 40 chr6 145785679 145785753 -3731284 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1697 583 216 0 33 chr6 145785984 145786228 -3730809 + (CA)n Simple_repeat Simple_repeat 1 235 0 5 1697 378 0 0 0 chr6 145786231 145786273 -3730764 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 1697 351 0 0 0 chr6 145786273 145786311 -3730726 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1697 1026 288 87 13 chr6 145786603 145786913 -3730124 + MTEa LTR MaLR 7 339 -40 5 1697 430 225 12 0 chr6 145786929 145787009 -3730028 - RSINE1 SINE B4 -31 134 54 5 1697 204 200 0 0 chr6 145787042 145787087 -3729950 + (CCG)n Simple_repeat Simple_repeat 3 47 0 5 1697 757 259 35 6 chr6 145787088 145787259 -3729778 - B3 SINE B2 -24 192 17 5 1697 792 163 0 0 chr6 145787885 145788057 -3728980 + (TG)n Simple_repeat Simple_repeat 1 172 0 5 1697 879 134 0 0 chr6 145788082 145788261 -3728776 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1697 789 170 0 0 chr6 145788278 145788617 -3728420 + (TG)n Simple_repeat Simple_repeat 1 339 0 5 1697 313 67 0 62 chr6 145788635 145788683 -3728354 - HAL1-3A_ME LINE L1 -846 2012 1968 5 1697 231 235 0 0 chr6 145789085 145789136 -3727901 + A-rich Low_complexity Low_complexity 1 51 0 5 1697 850 276 85 134 chr6 145789558 145789947 -3727090 + MTE2a LTR MaLR 1 370 -9 5 1697 297 0 0 0 chr6 145790460 145790493 -3726544 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1697 622 283 66 0 chr6 145790534 145790700 -3726337 - ID_B1 SINE B4 -10 214 38 5 1697 259 304 111 43 chr6 145790701 145790818 -3726219 + MTD LTR MaLR 1 125 -294 5 1697 1056 214 50 0 chr6 145790812 145791013 -3726024 - B3 SINE B2 -4 212 2 5 1697 1179 239 18 65 chr6 145791013 145791344 -3725693 + MTD LTR MaLR 105 419 0 5 1697 3819 28 2 0 chr6 145791572 145792035 -3725002 - L1Md_F2 LINE L1 0 6582 6119 5 1697 1117 64 0 25 chr6 145792032 145792192 -3724845 + L1Md_F2 LINE L1 6408 6563 -19 5 1697 6398 35 0 0 chr6 145792192 145793235 -3723802 - L1Md_F2 LINE L1 -457 6125 5083 5 1697 616 213 41 37 chr6 145793288 145793439 -3723598 + MTD LTR MaLR 12 159 -260 5 1697 369 0 0 0 chr6 145793439 145793480 -3723557 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1697 537 262 39 115 chr6 145793480 145793533 -3723504 + MTD LTR MaLR 146 196 -204 5 1697 532 293 84 47 chr6 145794275 145794490 -3722547 + ID_B1 SINE B4 1 223 -1 5 1697 250 240 31 0 chr6 145795141 145795237 -3721800 + CT-rich Low_complexity Low_complexity 2 100 0 5 1697 343 196 17 157 chr6 145795326 145795441 -3721596 - PB1 SINE Alu -28 99 1 5 1697 405 260 42 42 chr6 145796313 145796456 -3720581 + MTD LTR MaLR 130 272 -107 5 1697 815 195 37 8 chr6 145797160 145797325 -3719712 + B3A SINE B2 3 168 -30 5 1697 207 69 0 0 chr6 145797325 145797354 -3719683 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1697 519 237 34 97 chr6 145797354 145797394 -3719643 + B2_Mm2 SINE B2 156 195 0 5 1697 247 187 5 76 chr6 145797670 145797792 -3719245 + Lx2B LINE L1 6225 6325 -675 5 1697 250 283 19 39 chr6 145797776 145797879 -3719158 + Lx2B LINE L1 6225 6325 -675 5 1697 247 188 9 65 chr6 145797882 145797984 -3719053 + Lx3C LINE L1 6211 6301 -749 5 1697 237 241 21 35 chr6 145797994 145798096 -3718941 + Lx5 LINE L1 6211 6301 -749 5 1697 245 167 0 79 chr6 145798165 145798234 -3718803 + Lx3C LINE L1 6225 6289 -687 5 1697 225 231 0 37 chr6 145798218 145798272 -3718765 + Lx2B LINE L1 6225 6276 -724 5 1697 3097 184 34 8 chr6 145798330 145799056 -3717981 + Lx2B LINE L1 6225 6997 0 5 1697 460 269 89 10 chr6 145800977 145801131 -3715906 - B3A SINE B2 -14 202 36 5 1697 306 325 49 24 chr6 145801672 145801795 -3715242 - RMER30 DNA MER1_type -76 126 1 5 1697 226 356 44 0 chr6 145801961 145802051 -3714986 - L2a LINE L2 -10 3416 3323 5 1697 389 180 103 43 chr6 145802334 145802450 -3714587 + RSINE1 SINE B4 31 153 -12 5 1697 482 301 26 88 chr6 145802531 145802757 -3714280 - ID_B1 SINE B4 -4 220 9 5 1697 210 143 0 0 chr6 145804779 145804814 -3712223 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 5 1697 189 0 0 0 chr6 145805157 145805178 -3711859 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 1697 516 206 55 18 chr6 145805347 145805456 -3711581 + B3A SINE B2 39 151 -47 5 1697 321 89 0 0 chr6 145805461 145805506 -3711531 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1697 252 0 0 0 chr6 145805785 145805813 -3711224 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1697 416 282 161 45 chr6 145806872 145807158 -3709879 + Tigger15a DNA TcMar 53 371 -344 5 1697 373 191 70 60 chr6 145807161 145807261 -3709776 + PB1D9 SINE Alu 1 101 -19 5 1697 225 351 0 0 chr6 145808475 145808552 -3708485 + ID4 SINE ID 1 77 -6 5 1697 22 35 0 0 chr6 145809902 145809931 -3707106 + AT_rich Low_complexity Low_complexity 1 29 0 5 1697 351 0 0 0 chr6 145810538 145810577 -3706460 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1697 279 0 0 0 chr6 145812845 145812876 -3704161 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1697 226 247 41 0 chr6 145813933 145814006 -3703031 + (CCCG)n Simple_repeat Simple_repeat 4 79 0 5 1697 631 240 7 20 chr6 145816150 145816299 -3700738 - B1_Mur1 SINE Alu -2 147 1 5 1697 285 355 158 16 chr6 145816625 145816808 -3700229 - MIR SINE MIR -33 229 21 5 1697 1065 206 0 41 chr6 145816935 145817153 -3699884 + B3 SINE B2 2 210 -6 5 1697 22 35 0 0 chr6 145817163 145817192 -3699845 + AT_rich Low_complexity Low_complexity 1 29 0 5 1697 528 261 176 29 chr6 145817793 145818038 -3698999 - B4A SINE B4 -10 282 2 5 1697 387 0 0 0 chr6 145818702 145818745 -3698292 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1697 328 294 11 0 chr6 145819328 145819420 -3697617 - PB1D7 SINE Alu -27 93 1 5 1697 976 243 22 18 chr6 145819851 145820073 -3696964 + URR1A DNA MER1_type 1 223 -3 5 1697 502 200 98 24 chr6 145820318 145820441 -3696596 - B1F SINE Alu -16 133 2 5 1697 1339 244 33 8 chr6 145821355 145821722 -3695315 + MTEa LTR MaLR 1 376 -3 5 1697 887 269 125 26 chr6 145821904 145822248 -3694789 + MTEb LTR MaLR 2 379 0 5 1697 346 155 0 0 chr6 145822539 145822597 -3694440 + B3 SINE B2 2 59 -157 5 1697 750 258 59 20 chr6 145823193 145823395 -3693642 - B3 SINE B2 -6 210 1 5 1697 245 294 165 24 chr6 145824180 145824386 -3692651 + L2b LINE L2 2921 3155 -220 5 1697 281 267 0 9 chr6 145824481 145824587 -3692450 + (TG)n Simple_repeat Simple_repeat 1 105 0 5 1697 974 262 44 48 chr6 145824592 145824885 -3692152 - B4A SINE B4 0 292 1 5 1697 652 196 0 0 chr6 145826338 145826440 -3690597 + ID_B1 SINE B4 116 217 -7 5 1697 764 270 135 16 chr6 145826440 145826692 -3690345 + B4 SINE B4 5 286 -6 5 1697 375 211 0 0 chr6 145827047 145827137 -3689900 + (ATG)n Simple_repeat Simple_repeat 1 90 0 5 1697 321 229 18 24 chr6 145827503 145827673 -3689364 + (TATG)n Simple_repeat Simple_repeat 2 170 0 5 1697 474 238 47 53 chr6 145827790 145827959 -3689078 - RMER15 LTR ERVL -108 467 300 5 1697 233 316 76 71 chr6 145827953 145828137 -3688900 - RMER15 LTR ERVL -390 185 1 5 1697 361 328 37 15 chr6 145828194 145828330 -3688707 - B1F1 SINE Alu -2 147 9 5 1697 214 302 94 8 chr6 145828351 145828478 -3688559 - MIR SINE MIR -14 248 111 5 1697 315 250 51 103 chr6 145828482 145828638 -3688399 - RMER15 LTR ERVL -427 148 1 5 1697 223 217 43 0 chr6 145828639 145828685 -3688352 - ID4 SINE ID -34 49 2 5 1697 296 296 30 60 chr6 145828685 145828818 -3688219 - B1F SINE Alu 0 149 21 5 1697 242 278 118 28 chr6 145828874 145829052 -3687985 - MIR SINE MIR -47 215 22 5 1697 708 268 0 0 chr6 145829233 145829386 -3687651 + MER3 DNA MER1_type 54 206 -3 5 1697 808 95 41 6 chr6 145829586 145829755 -3687282 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 5 1697 239 182 73 0 chr6 145830221 145830276 -3686761 - MER63D DNA AcHobo -1 1060 1002 5 1697 1231 296 109 20 chr6 145830282 145830785 -3686252 - MER63C DNA AcHobo -97 833 286 5 1697 226 295 33 0 chr6 145831493 145831554 -3685483 + PB1D10 SINE Alu 1 63 -54 5 1697 553 336 105 28 chr6 145831642 145831880 -3685157 - L1MB7 LINE L1 -215 5969 5725 5 1697 3298 38 3 0 chr6 145831880 145832271 -3684766 - L1Md_T LINE L1 0 6582 6191 5 1697 553 336 105 28 chr6 145832271 145832461 -3684576 - L1MB7 LINE L1 -460 5724 5508 5 1697 424 250 38 9 chr6 145832749 145832854 -3684183 + PB1D10 SINE Alu 9 116 -1 5 1697 267 203 0 0 chr6 145833412 145833471 -3683566 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1697 27 62 0 0 chr6 145834495 145834543 -3682494 + AT_rich Low_complexity Low_complexity 1 48 0 5 1697 270 0 0 0 chr6 145834758 145834788 -3682249 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1697 189 121 0 0 chr6 145835162 145835195 -3681842 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1697 830 233 122 32 chr6 145835329 145835608 -3681429 - ORR1D2 LTR MaLR -2 368 65 5 1697 243 0 0 0 chr6 145835834 145835861 -3681176 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1697 1086 327 50 61 chr6 145836434 145836560 -3680477 - MER63D DNA AcHobo -554 507 386 5 1697 731 204 9 140 chr6 145836560 145836788 -3680249 + B3A SINE B2 1 198 0 5 1697 1086 327 50 61 chr6 145836788 145837136 -3679901 - MER63D DNA AcHobo -676 385 38 5 1697 359 333 82 18 chr6 145837452 145837726 -3679311 + L2b LINE L2 2931 3230 -196 5 1697 235 269 75 17 chr6 145837780 145837882 -3679155 + MIR SINE MIR 162 267 -1 5 1697 286 321 45 9 chr6 145837965 145838075 -3678962 + L2b LINE L2 3226 3339 -36 5 1697 528 342 57 90 chr6 145838086 145838452 -3678585 - ORR1E LTR MaLR -5 354 1 5 1697 1112 72 0 0 chr6 145838612 145838751 -3678286 + B1_Mm SINE Alu 1 139 -8 5 1697 219 36 0 0 chr6 145838751 145838779 -3678258 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1697 520 170 120 0 chr6 145839679 145839779 -3677258 - ID_B1 SINE B4 -11 213 102 5 1697 216 0 0 0 chr6 145839781 145839805 -3677232 + (CCA)n Simple_repeat Simple_repeat 1 24 0 5 1697 623 274 109 0 chr6 145839905 145840080 -3676957 + MTE2b LTR MaLR 26 219 -160 5 1697 636 194 0 0 chr6 145841010 145841149 -3675888 + (TG)n Simple_repeat Simple_repeat 2 140 0 6 1697 470 249 115 74 chr6 145841494 145841737 -3675300 + MTE2a LTR MaLR 127 379 0 6 1697 418 312 79 26 chr6 145841856 145842083 -3674954 - MIRb SINE MIR -23 245 7 6 1697 214 319 14 0 chr6 145842490 145842562 -3674475 - MIRc SINE MIR -82 186 114 6 1697 194 270 14 0 chr6 145842658 145842732 -3674305 + C-rich Low_complexity Low_complexity 5 79 0 6 1697 363 192 37 37 chr6 145842801 145842882 -3674155 - B1F2 SINE Alu -34 115 35 6 1697 665 264 146 35 chr6 145843238 145843515 -3673522 + ORR1E LTR MaLR 1 331 -48 6 1697 836 289 50 57 chr6 145843998 145844280 -3672757 + B4A SINE B4 13 292 0 6 1697 261 0 0 0 chr6 145844309 145844338 -3672699 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1697 3299 11 6 0 chr6 145844345 145844710 -3672327 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1697 56626 23 17 3 chr6 145844710 145851092 -3665945 - IAPEz-int LTR ERVK 0 6481 8 6 1697 3299 11 6 0 chr6 145851092 145851457 -3665580 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1697 310 317 40 16 chr6 145851539 145851664 -3665373 + B1F SINE Alu 10 137 -12 6 1697 26 30 0 0 chr6 145851755 145851788 -3665249 + AT_rich Low_complexity Low_complexity 1 33 0 6 1697 252 228 18 0 chr6 145852177 145852234 -3664803 - Cheshire DNA MER1_type -2143 277 220 6 1697 489 76 0 0 chr6 145852248 145852314 -3664723 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 1697 419 208 61 20 chr6 145852984 145853082 -3663955 + B1F SINE Alu 48 149 0 6 1697 498 252 153 0 chr6 145853428 145853559 -3663478 + B3A SINE B2 5 155 -43 6 1697 660 244 0 0 chr6 145853962 145854142 -3662895 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1697 378 178 47 0 chr6 145854155 145854262 -3662775 + (CATA)n Simple_repeat Simple_repeat 4 115 0 6 1697 708 92 84 7 chr6 145854357 145854500 -3662537 + RMER17B LTR ERVK 308 461 -497 6 1697 273 29 0 0 chr6 145854500 145854534 -3662503 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1697 229 305 185 51 chr6 145854759 145855170 -3661867 + L2a LINE L2 2931 3396 -30 6 1697 327 229 9 92 chr6 145855448 145855539 -3661498 + B3A SINE B2 110 203 -13 6 1697 376 243 6 6 chr6 145855584 145855754 -3661283 + (CA)n Simple_repeat Simple_repeat 2 171 0 6 1697 200 230 26 33 chr6 145855771 145855924 -3661113 + (CATATA)n Simple_repeat Simple_repeat 2 153 0 6 1697 580 230 0 8 chr6 145855887 145856159 -3660878 + (CA)n Simple_repeat Simple_repeat 1 269 0 6 1697 831 151 0 0 chr6 145856207 145856326 -3660711 + B1_Mur2 SINE Alu 5 123 -26 6 1697 22 0 0 0 chr6 145856694 145856716 -3660321 + AT_rich Low_complexity Low_complexity 1 22 0 6 1697 387 0 0 0 chr6 145856724 145856767 -3660270 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 6 1697 204 135 0 0 chr6 145856767 145856804 -3660233 + (ACCG)n Simple_repeat Simple_repeat 3 39 0 6 1697 456 221 114 9 chr6 145856807 145856912 -3660125 - PB1D9 SINE Alu -2 118 3 6 1697 258 286 57 75 chr6 145857900 145858006 -3659031 + B4 SINE B4 181 284 -8 6 1697 789 68 0 0 chr6 145858025 145858142 -3658895 + (GA)n Simple_repeat Simple_repeat 2 118 0 6 1697 305 319 125 7 chr6 145858166 145858302 -3658735 + HAL1-3A_ME LINE L1 1976 2127 -731 6 1697 255 240 0 0 chr6 145858351 145858455 -3658582 + (CA)n Simple_repeat Simple_repeat 1 104 0 6 1697 264 30 0 0 chr6 145858745 145858778 -3658259 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1697 554 323 105 27 chr6 145858780 145859076 -3657961 + MER58B DNA MER1_type 3 321 -20 6 1697 288 253 0 85 chr6 145859265 145859347 -3657690 - RMER21B LTR ERV1 -112 835 761 6 1697 677 184 15 7 chr6 145859393 145859530 -3657507 - RMER21B LTR ERV1 -383 459 322 6 1697 3305 91 29 8 chr6 145859661 145860150 -3656887 + RLTR28 LTR ERVL 1 499 -25 6 1697 405 0 0 0 chr6 145860453 145860498 -3656539 + (TC)n Simple_repeat Simple_repeat 1 45 0 6 1697 530 283 0 23 chr6 145860645 145860775 -3656262 + B1F1 SINE Alu 23 149 0 6 1697 402 329 55 31 chr6 145860818 145861072 -3655965 - RMER15 LTR ERVL -23 552 293 6 1697 887 144 0 27 chr6 145861377 145861562 -3655475 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1697 604 260 66 58 chr6 145862265 145862539 -3654498 + L1MA4 LINE L1 5653 5928 -372 6 1697 288 263 0 0 chr6 145862548 145862662 -3654375 + (TG)n Simple_repeat Simple_repeat 1 114 0 6 1697 185 133 67 0 chr6 145862735 145862780 -3654257 + G-rich Low_complexity Low_complexity 4 51 0 6 1697 454 284 98 49 chr6 145863214 145863418 -3653619 + LTR81B LTR ERV1? 95 308 -1085 6 1697 221 118 100 8 chr6 145864087 145864207 -3652830 + (TG)n Simple_repeat Simple_repeat 2 132 0 6 1697 317 192 82 19 chr6 145864226 145864385 -3652652 + (TG)n Simple_repeat Simple_repeat 1 169 0 6 1697 288 0 0 0 chr6 145864405 145864437 -3652600 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1697 1183 227 41 15 chr6 145864446 145864714 -3652323 - B4A SINE B4 -1 291 17 6 1697 192 236 0 8 chr6 145865462 145865502 -3651535 - MIRc SINE MIR -123 153 116 6 1697 312 172 0 0 chr6 145865941 145865999 -3651038 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1697 243 0 0 0 chr6 145867094 145867121 -3649916 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1697 625 258 163 12 chr6 145867123 145867374 -3649663 - B4A SINE B4 -2 290 2 6 1697 262 255 113 18 chr6 145867379 145867594 -3649443 - L1M4 LINE L1 -876 5483 5244 6 1697 308 354 45 30 chr6 145867695 145867711 -3649326 - B4A SINE B4 -66 226 91 6 1697 532 241 0 51 chr6 145867711 145867829 -3649208 - PB1D9 SINE Alu -3 117 6 6 1697 452 142 46 34 chr6 145868109 145868284 -3648753 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 6 1697 420 263 183 64 chr6 145868744 145868963 -3648074 + B4A SINE B4 48 292 0 6 1697 442 265 26 0 chr6 145870135 145870252 -3646785 - MTEa LTR MaLR -244 135 16 6 1697 390 30 60 15 chr6 145870653 145870720 -3646317 + (CAAAA)n Simple_repeat Simple_repeat 5 74 0 6 1697 547 260 8 30 chr6 145872782 145872913 -3644124 + B1F SINE Alu 1 128 -21 6 1697 314 245 143 0 chr6 145872934 145873032 -3644005 + PB1D10 SINE Alu 5 116 -1 6 1697 294 345 20 40 chr6 145873881 145874032 -3643005 - MARNA DNA Mariner -59 527 380 6 1697 629 239 121 11 chr6 145874085 145874267 -3642770 - B3 SINE B2 -14 202 1 6 1697 252 0 0 0 chr6 145874432 145874460 -3642577 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 6 1697 1596 190 174 54 chr6 145874812 145875296 -3641741 + RMER20B LTR ERVK 42 583 -44 6 1697 317 280 119 10 chr6 145875337 145875438 -3641599 + RMER20B LTR ERVK 494 605 -22 6 1697 540 284 130 85 chr6 145876086 145876417 -3640620 + MTEb LTR MaLR 1 346 -33 6 1697 240 270 150 0 chr6 145876635 145876735 -3640302 - MLT1K LTR MaLR -97 498 384 6 1697 853 268 126 60 chr6 145877162 145877511 -3639526 - MTEb LTR MaLR -5 374 3 6 1697 1098 67 0 0 chr6 145877536 145877670 -3639367 + B1_Mus1 SINE Alu 2 135 -13 6 1697 234 0 0 0 chr6 145877670 145877696 -3639341 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 6 1697 614 250 8 15 chr6 145877710 145877844 -3639193 - ID_B1 SINE B4 -1 223 91 6 1697 326 259 142 77 chr6 145878094 145878249 -3638788 + B4A SINE B4 120 284 -8 6 1697 582 15 0 0 chr6 145878592 145878659 -3638378 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 6 1697 447 314 57 79 chr6 145879137 145879455 -3637582 - ORR1E LTR MaLR -46 313 3 6 1697 1060 152 16 21 chr6 145879458 145879646 -3637391 + B2_Mm2 SINE B2 5 191 -4 6 1697 852 214 106 11 chr6 145879733 145879922 -3637115 - B3 SINE B2 0 216 10 6 1697 1537 239 55 32 chr6 145879936 145880338 -3636699 + MTD LTR MaLR 1 411 -8 6 1697 1166 70 0 0 chr6 145881053 145881196 -3635841 - B1_Mus2 SINE Alu 0 147 5 6 1697 2395 14 32 11 chr6 145881268 145881547 -3635490 - LSU-rRNA_Hsa rRNA rRNA -3245 1790 1506 6 1697 646 241 55 49 chr6 145881704 145881887 -3635150 + ID_B1 SINE B4 39 222 -2 6 1697 274 303 33 11 chr6 145882022 145882112 -3634925 - RSINE1 SINE B4 -30 135 44 6 1697 315 211 18 18 chr6 145882224 145882335 -3634702 + CT-rich Low_complexity Low_complexity 4 114 0 6 1697 198 0 0 0 chr6 145882353 145882375 -3634662 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1698 207 311 189 0 chr6 145883681 145883829 -3633208 - MIRb SINE MIR -27 241 66 6 1698 306 0 0 0 chr6 145883885 145883919 -3633118 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1698 264 295 25 13 chr6 145884702 145884781 -3632256 + MIRc SINE MIR 50 129 -139 6 1698 592 291 71 49 chr6 145884850 145884899 -3632138 - B4A SINE B4 -18 274 228 6 1698 342 0 0 0 chr6 145884899 145884937 -3632100 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 6 1698 592 291 71 49 chr6 145884937 145885154 -3631883 - B4A SINE B4 -65 227 2 6 1698 207 283 17 0 chr6 145885184 145885244 -3631793 + MIRb SINE MIR 182 242 -26 6 1698 279 202 0 143 chr6 145886286 145886299 -3630738 - PB1D10 SINE Alu 0 117 34 6 1698 368 188 200 0 chr6 145886299 145886384 -3630653 - ID_B1 SINE B4 -8 216 115 6 1698 348 200 85 57 chr6 145886748 145886854 -3630183 - B1F2 SINE Alu -39 110 2 6 1698 262 278 109 34 chr6 145886750 145886869 -3630168 - B4 SINE B4 -95 197 70 6 1698 517 259 0 0 chr6 145887072 145887180 -3629857 + PB1D10 SINE Alu 2 109 -8 6 1698 24 0 0 0 chr6 145887778 145887802 -3629235 + AT_rich Low_complexity Low_complexity 1 24 0 6 1698 674 211 80 26 chr6 145888476 145888627 -3628410 - RSINE1 SINE B4 -2 163 5 6 1698 245 234 0 0 chr6 145888627 145888674 -3628363 - ID_B1 SINE B4 -3 221 175 6 1698 219 36 0 0 chr6 145888732 145888760 -3628277 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1698 366 208 160 0 chr6 145888838 145888982 -3628055 - Lx9 LINE L1 -22 7622 7456 6 1698 876 257 41 52 chr6 145889015 145889306 -3627731 - Lx9 LINE L1 -471 7173 6886 6 1698 1368 229 82 44 chr6 145889493 145889655 -3627382 + MTE2a LTR MaLR 23 197 -182 7 1698 414 0 0 0 chr6 145889655 145889701 -3627336 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 1698 1368 229 82 44 chr6 145889701 145889880 -3627157 + MTE2a LTR MaLR 198 377 -2 7 1698 1161 115 0 0 chr6 145890266 145890495 -3626542 + (TG)n Simple_repeat Simple_repeat 1 229 0 7 1698 745 274 59 55 chr6 145890498 145890788 -3626249 - B4A SINE B4 0 292 2 7 1698 510 247 163 33 chr6 145892203 145892387 -3624650 - B4 SINE B4 -64 228 21 7 1698 504 62 0 36 chr6 145892387 145892471 -3624566 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 7 1698 480 297 67 59 chr6 145892762 145893016 -3624021 - L1MC5 LINE L1 -65 7896 7641 7 1698 243 0 0 0 chr6 145894787 145894814 -3622223 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1698 237 290 61 53 chr6 145895202 145895333 -3621704 - YREP_Mm Unknown Unknown -1458 354 223 7 1698 530 230 86 47 chr6 145895228 145895356 -3621681 + ID_B1 SINE B4 78 210 -14 7 1698 213 65 0 0 chr6 145895927 145895958 -3621079 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 1698 210 327 28 19 chr6 145896734 145896840 -3620197 + L2a LINE L2 3318 3424 -2 7 1698 599 249 34 37 chr6 145897277 145897339 -3619698 + ID SINE ID 33 86 -206 7 1698 470 259 62 35 chr6 145897339 145897483 -3619554 + B1F SINE Alu 1 148 -1 7 1698 583 262 71 0 chr6 145897924 145898050 -3618987 + ID_B1 SINE B4 79 213 -11 7 1698 676 306 107 35 chr6 145898680 145898902 -3618135 + MER44B DNA MER2_type 175 410 -140 7 1698 225 94 0 0 chr6 145898902 145898934 -3618103 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1698 676 306 107 35 chr6 145898934 145899056 -3617981 + MER44B DNA MER2_type 411 544 -6 7 1698 422 263 136 68 chr6 145899898 145900045 -3616992 + MER5A DNA MER1_type 7 163 -26 7 1698 784 161 8 0 chr6 145902797 145902921 -3614116 + B1_Mur3 SINE Alu 2 126 -23 7 1698 279 0 0 0 chr6 145902929 145902960 -3614077 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 7 1698 333 219 14 14 chr6 145902964 145903038 -3613999 - B1F SINE Alu -74 75 2 7 1698 267 292 35 26 chr6 145903348 145903464 -3613573 + MIR SINE MIR 111 227 -35 7 1698 571 284 10 83 chr6 145903761 145903953 -3613084 + B3A SINE B2 6 183 -15 7 1698 803 266 18 57 chr6 145905125 145905370 -3611667 + ID_B1 SINE B4 6 246 -46 7 1698 409 141 0 23 chr6 145905371 145905458 -3611579 + GA-rich Low_complexity Low_complexity 2 86 0 7 1698 546 196 0 57 chr6 145905496 145905613 -3611424 - B3 SINE B2 -83 112 2 7 1698 249 33 0 0 chr6 145905647 145905677 -3611360 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1698 257 0 30 0 chr6 145905948 145905981 -3611056 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1698 219 163 0 23 chr6 145906385 145906429 -3610608 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 7 1698 22 70 0 0 chr6 145907694 145907737 -3609300 + AT_rich Low_complexity Low_complexity 1 43 0 7 1698 627 236 48 20 chr6 145907737 145907884 -3609153 - RSINE1 SINE B4 -10 155 5 7 1698 451 265 23 2 chr6 145908526 145908653 -3608384 + PB1D10 SINE Alu 2 139 -10 7 1698 234 250 59 88 chr6 145908545 145908681 -3608356 - YREP_Mm Unknown Unknown -1516 296 165 7 1698 281 226 33 77 chr6 145909362 145909453 -3607584 + MT2B2 LTR ERVL 152 238 -346 7 1698 620 242 55 0 chr6 145909373 145909501 -3607536 + ID_B1 SINE B4 82 216 -8 7 1698 489 239 0 41 chr6 145910223 145910345 -3606692 + B3A SINE B2 2 118 -80 7 1698 897 159 7 7 chr6 145911456 145911602 -3605435 + B1_Mur4 SINE Alu 5 150 0 7 1698 755 262 95 37 chr6 145911731 145912004 -3605033 + B4 SINE B4 2 290 -2 7 1698 305 255 20 39 chr6 145913827 145913929 -3603108 + L1MA4 LINE L1 5840 5939 -361 7 1698 213 139 0 0 chr6 145913932 145913975 -3603062 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1698 202 220 0 0 chr6 145914213 145914263 -3602774 + A-rich Low_complexity Low_complexity 1 50 0 7 1698 194 30 0 83 chr6 145914911 145914947 -3602090 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 7 1698 1236 48 0 0 chr6 145914954 145915101 -3601936 - B1_Mm SINE Alu 0 147 1 7 1698 375 23 0 0 chr6 145916141 145916185 -3600852 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1698 464 250 158 13 chr6 145918181 145918339 -3598698 + B3A SINE B2 1 181 -17 7 1698 760 267 29 0 chr6 145918967 145919173 -3597864 - B3 SINE B2 -4 212 1 7 1698 400 189 19 19 chr6 145919391 145919499 -3597538 + (CATATA)n Simple_repeat Simple_repeat 2 109 0 7 1698 953 92 15 0 chr6 145919502 145919633 -3597404 - B1_Mus2 SINE Alu -5 142 10 7 1698 242 259 37 54 chr6 145919819 145919901 -3597136 + MIRm SINE MIR 82 159 -49 7 1698 219 226 0 0 chr6 145919930 145919983 -3597054 + (ATGGTG)n Simple_repeat Simple_repeat 6 58 0 7 1698 1125 197 71 45 chr6 145919984 145920250 -3596787 + MT2A LTR ERVL 1 273 -260 7 1698 809 188 13 48 chr6 145920296 145920493 -3596544 - B3 SINE B2 -10 185 7 7 1698 881 256 50 7 chr6 145920486 145920691 -3596346 + MT2A LTR ERVL 245 512 -72 7 1698 362 39 19 0 chr6 145920691 145920743 -3596294 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1698 297 279 41 105 chr6 145920743 145920763 -3596274 + MT2A LTR ERVL 513 532 -52 7 1698 612 266 114 62 chr6 145921268 145921609 -3595428 + ORR1E LTR MaLR 1 359 0 7 1698 264 341 65 79 chr6 145922359 145922636 -3594401 - ORR1E LTR MaLR -33 326 54 7 1698 279 0 0 0 chr6 145923010 145923041 -3593996 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1698 333 0 0 0 chr6 145923041 145923077 -3593960 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 1698 256 390 25 31 chr6 145923896 145924092 -3592945 + MIR SINE MIR 67 261 -1 7 1698 856 283 49 35 chr6 145924308 145924594 -3592443 + B4 SINE B4 1 290 -2 7 1698 1845 149 78 23 chr6 145925102 145925446 -3591591 - ORR1B2 LTR MaLR -3 364 2 7 1698 28 0 0 0 chr6 145925921 145925949 -3591088 + AT_rich Low_complexity Low_complexity 1 28 0 7 1698 315 0 0 0 chr6 145927153 145927188 -3589849 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1698 337 229 111 63 chr6 145927212 145927338 -3589699 + MTEa LTR MaLR 1 132 -247 7 1698 528 302 78 11 chr6 145927351 145927542 -3589495 + MTEa LTR MaLR 176 379 0 7 1698 279 255 7 14 chr6 145927574 145927663 -3589374 - MTEb LTR MaLR -5 354 269 7 1698 745 223 34 29 chr6 145927707 145927915 -3589122 - B3 SINE B2 -7 209 1 7 1698 273 29 0 0 chr6 145928506 145928540 -3588497 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1698 3306 154 130 29 chr6 145928844 145929498 -3587539 + RMER6A LTR ERVK 1 720 -36 7 1698 320 238 19 38 chr6 145929829 145929934 -3587103 - MER34A1 LTR ERV1 -71 516 414 7 1698 316 314 214 24 chr6 145930388 145930682 -3586355 + L1M4 LINE L1 2666 3015 -3131 7 1698 25 0 0 0 chr6 145930849 145930874 -3586163 + AT_rich Low_complexity Low_complexity 1 25 0 7 1698 318 203 30 20 chr6 145930923 145930998 -3586039 - MTD LTR MaLR 0 419 359 7 1698 319 346 124 4 chr6 145930998 145931265 -3585772 + L1M4 LINE L1 3652 3950 -2196 7 1698 6984 120 13 31 chr6 145931352 145932492 -3584545 - L1_Mur2 LINE L1 -1275 4602 3483 7 1698 904 246 98 135 chr6 145932487 145932812 -3584225 + Lx5 LINE L1 6738 7050 0 7 1698 217 0 61 0 chr6 145932845 145932878 -3584159 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 7 1698 185 347 146 41 chr6 145933781 145933904 -3583133 - L2b LINE L2 -20 3355 3220 7 1698 794 333 113 13 chr6 145934025 145934485 -3582552 - L2b LINE L2 -353 3066 2561 7 1698 205 383 37 9 chr6 145934506 145934614 -3582423 - MIR SINE MIR -15 247 137 7 1698 299 315 108 43 chr6 145934625 145934904 -3582133 - L2b LINE L2 -868 2551 2255 7 1698 494 70 0 14 chr6 145935193 145935265 -3581772 + (TCC)n Simple_repeat Simple_repeat 2 72 0 7 1698 603 259 84 0 chr6 145935268 145935399 -3581638 - B1F SINE Alu -7 142 1 7 1698 252 333 7 109 chr6 145935276 145935414 -3581623 - MT2B LTR ERVL -326 275 152 7 1698 607 192 6 23 chr6 145935643 145935819 -3581218 + GA-rich Low_complexity Low_complexity 1 173 0 7 1698 687 213 11 18 chr6 145937346 145937625 -3579412 + (TATG)n Simple_repeat Simple_repeat 1 276 0 7 1698 849 363 82 59 chr6 145937748 145938378 -3578659 - MER21B LTR ERV1 -216 647 3 7 1698 836 178 11 0 chr6 145939487 145939661 -3577376 + (CATA)n Simple_repeat Simple_repeat 1 176 0 7 1698 389 115 0 47 chr6 145939668 145939732 -3577305 + HAL1-3A_ME LINE L1 1974 2034 -824 7 1698 336 298 32 16 chr6 145939861 145939987 -3577050 + MER33 DNA MER1_type 32 159 -165 7 1698 329 268 48 106 chr6 145939997 145940185 -3576852 - B2_Mm2 SINE B2 -9 186 10 7 1698 690 316 0 31 chr6 145940027 145940190 -3576847 - RSINE1 SINE B4 -2 163 6 7 1698 1186 195 0 5 chr6 145940206 145940417 -3576620 + B3 SINE B2 1 210 -6 7 1698 653 303 85 22 chr6 145942404 145942674 -3574363 - MLT1B LTR MaLR -17 373 87 7 1698 243 0 0 0 chr6 145942832 145942859 -3574178 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1698 3308 55 2 0 chr6 145943025 145943424 -3573613 - MTB LTR MaLR 0 400 1 7 1698 3263 31 2 37 chr6 145943437 145943841 -3573196 + RLTR10 LTR ERVK 1 390 0 7 1698 8035 31 8 2 chr6 145943886 145944868 -3572169 + RLTR10-int LTR ERVK 11 998 -989 7 1698 321 270 148 7 chr6 145944915 145945064 -3571973 + RLTR10-int LTR ERVK 981 1150 -5392 7 1698 8531 21 0 0 chr6 145945146 145946141 -3570896 + RLTR10-int LTR ERVK 990 1984 -3 7 1698 3188 31 2 44 chr6 145946143 145946550 -3570487 + RLTR10 LTR ERVK 1 390 0 7 1698 1394 241 78 0 chr6 145948286 145948634 -3568403 + MTEa LTR MaLR 1 375 -4 7 1698 241 268 97 106 chr6 145948691 145948908 -3568129 + MIR SINE MIR 19 233 -35 7 1698 1066 147 147 0 chr6 145949361 145949558 -3567479 + URR1A DNA MER1_type 1 226 0 7 1698 444 165 0 0 chr6 145949606 145949697 -3567340 + (CCA)n Simple_repeat Simple_repeat 1 91 0 7 1698 189 374 22 11 chr6 145950820 145950912 -3566125 - L2a LINE L2 -28 3398 3306 7 1698 347 315 132 57 chr6 145951289 145951659 -3565378 - L2a LINE L2 -720 2699 2302 7 1698 217 219 27 0 chr6 145953327 145953400 -3563637 + CT-rich Low_complexity Low_complexity 2 76 0 7 1698 381 345 16 92 chr6 145954423 145954608 -3562429 + LTR81A LTR ERV1? 947 1117 -233 7 1698 678 266 84 101 chr6 145954623 145954978 -3562059 - ORR1E LTR MaLR -10 349 1 8 1698 275 272 43 21 chr6 145955214 145955308 -3561729 + MER5A1 DNA MER1_type 67 162 -4 8 1698 840 84 0 0 chr6 145955643 145955774 -3561263 + (GA)n Simple_repeat Simple_repeat 1 131 0 8 1698 284 324 115 40 chr6 145956879 145957027 -3560010 + MLT1B LTR MaLR 1 159 -231 8 1698 318 328 41 16 chr6 145957081 145957202 -3559835 + MLT1B LTR MaLR 267 390 0 8 1698 342 0 0 0 chr6 145958253 145958291 -3558746 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1698 949 225 5 5 chr6 145959519 145959707 -3557330 + B4 SINE B4 35 222 -70 8 1698 855 328 3 62 chr6 145959994 145960300 -3556737 - B4A SINE B4 -4 288 1 8 1698 280 299 105 23 chr6 145960881 145961213 -3555824 - L1M3 LINE L1 -769 5374 5010 8 1698 303 224 148 37 chr6 145961310 145961451 -3555586 - ID_B1 SINE B4 -64 228 82 8 1698 302 240 72 10 chr6 145961471 145961568 -3555469 - Lx4B LINE L1 0 7058 6956 8 1698 241 205 0 0 chr6 145961576 145961615 -3555422 + Lx4B LINE L1 6882 6920 -138 8 1698 244 369 99 36 chr6 145961905 145962158 -3554879 + L3 LINE CR1 858 1126 -3363 8 1698 309 309 64 0 chr6 145962290 145962400 -3554637 + ORR1E LTR MaLR 1 117 -242 8 1698 1853 196 89 8 chr6 145962548 145962929 -3554108 - MTD LTR MaLR -7 412 1 8 1698 206 278 190 34 chr6 145962930 145963109 -3553928 - L2 LINE L2 -570 2849 2643 8 1698 320 285 122 14 chr6 145964164 145964303 -3552734 + B4 SINE B4 125 278 -14 8 1698 1257 41 0 0 chr6 145965037 145965183 -3551854 + B1_Mm SINE Alu 2 147 0 8 1698 262 208 57 0 chr6 145965198 145965251 -3551786 + MER5A DNA MER1_type 59 114 -75 8 1698 473 317 18 42 chr6 145965512 145965680 -3551357 - MER105 DNA DNA -40 164 1 8 1698 180 348 0 0 chr6 145966063 145966109 -3550928 - L2 LINE L2 -2066 1353 1308 8 1698 222 37 0 0 chr6 145966266 145966293 -3550744 + (GGCTG)n Simple_repeat Simple_repeat 4 30 0 8 1698 367 255 145 30 chr6 145966503 145966669 -3550368 + L3 LINE CR1 2109 2293 -2196 8 1698 862 298 82 19 chr6 145967085 145967403 -3549634 - MTEa LTR MaLR -39 340 3 8 1698 268 350 93 83 chr6 145967403 145967512 -3549525 - MLT2B5 LTR ERVL -571 146 35 8 1698 252 0 0 0 chr6 145967542 145967570 -3549467 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1698 569 233 3 16 chr6 145968222 145968525 -3548512 + (TG)n Simple_repeat Simple_repeat 1 299 0 8 1699 309 135 0 0 chr6 146020800 146020852 -3496185 + (TCTG)n Simple_repeat Simple_repeat 3 54 0 1 1699 550 250 8 0 chr6 146020862 146020994 -3496043 - ID_B1 SINE B4 -2 222 90 2 1699 501 237 59 0 chr6 146021004 146021139 -3495898 - B1F SINE Alu -6 143 1 3 1699 569 241 26 70 chr6 146022394 146022550 -3494487 + B1F SINE Alu 1 149 0 4 1699 338 285 48 38 chr6 146022719 146022905 -3494132 + L1M4 LINE L1 5122 5309 -837 5 1699 268 235 146 10 chr6 146023050 146023153 -3493884 + L1M4 LINE L1 5497 5613 -551 5 1699 256 269 24 40 chr6 146023142 146023266 -3493771 + L1M3 LINE L1 3050 3171 -2969 6 1699 474 279 31 25 chr6 146023281 146023317 -3493720 + B3 SINE B2 52 83 -133 7 1699 2721 86 61 32 chr6 146023317 146023726 -3493311 - BGLII_Mus LTR ERVK 0 422 2 8 1699 474 279 31 25 chr6 146023726 146023851 -3493186 + B3 SINE B2 84 213 -3 7 1699 540 290 87 82 chr6 146023864 146024048 -3492989 - B3A SINE B2 -9 186 2 9 1699 1195 101 89 6 chr6 146024058 146024237 -3492800 - B2_Mm2 SINE B2 -1 194 1 1 1699 926 278 171 7 chr6 146024343 146024764 -3492273 + L1M3 LINE L1 3346 3835 -2305 6 1699 1215 55 0 0 chr6 146025320 146025466 -3491571 + B1_Mus2 SINE Alu 2 147 0 1 1699 309 109 0 0 chr6 146025470 146025516 -3491521 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1699 249 296 40 10 chr6 146025868 146025967 -3491070 - ORR1E LTR MaLR -121 238 137 1 1699 422 231 36 36 chr6 146026161 146026273 -3490764 - ORR1E LTR MaLR -247 112 1 1 1699 25 0 0 0 chr6 146027690 146027715 -3489322 + AT_rich Low_complexity Low_complexity 1 25 0 1 1699 463 285 73 39 chr6 146027970 146028149 -3488888 + ORR1E LTR MaLR 45 229 -130 1 1699 514 226 119 58 chr6 146028364 146028646 -3488391 + MTD LTR MaLR 1 385 -34 1 1699 216 0 0 0 chr6 146028646 146028670 -3488367 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 1 1699 232 182 73 83 chr6 146028670 146028692 -3488345 + MTD LTR MaLR 386 405 -14 1 1699 330 182 0 0 chr6 146029299 146029365 -3487672 + GA-rich Low_complexity Low_complexity 6 71 0 1 1699 1253 282 111 33 chr6 146029956 146030469 -3486568 + MER82 DNA MER2_type 94 646 -7 1 1699 563 0 15 0 chr6 146030685 146030752 -3486285 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1699 193 360 23 0 chr6 146030787 146030873 -3486164 - L2 LINE L2 -1341 2078 1991 2 1699 468 307 59 29 chr6 146030980 146031252 -3485785 + B4A SINE B4 1 280 -12 2 1699 293 288 53 18 chr6 146032533 146032646 -3484391 - B1F1 SINE Alu -20 129 13 2 1699 367 229 8 8 chr6 146032704 146032823 -3484214 + CT-rich Low_complexity Low_complexity 3 121 0 2 1699 369 218 227 0 chr6 146032823 146032933 -3484104 - B1_Mur2 SINE Alu 0 149 15 2 1699 182 240 98 59 chr6 146033190 146033292 -3483745 + MIRb SINE MIR 120 225 -43 2 1699 491 243 246 27 chr6 146033343 146033563 -3483474 + MTE2b LTR MaLR 8 275 -104 2 1699 200 271 71 0 chr6 146034281 146034351 -3482686 + L2b LINE L2 3261 3335 -40 2 1699 1768 199 60 5 chr6 146034386 146034770 -3482267 + MTD LTR MaLR 1 405 -14 2 1699 2651 166 113 97 chr6 146035077 146035678 -3481359 - RMER19C LTR ERVK 0 611 1 3 1699 1801 184 32 16 chr6 146036073 146036779 -3480258 + L1_Mur2 LINE L1 892 1544 -4333 3 1699 5984 95 27 0 chr6 146036776 146037589 -3479448 - L1VL4 LINE L1 -5467 835 1 3 1699 17531 171 27 41 chr6 146037611 146037934 -3479103 + L1_Mur2 LINE L1 1759 2066 -3811 3 1699 342 0 0 0 chr6 146037934 146037972 -3479065 + (CCA)n Simple_repeat Simple_repeat 1 38 0 3 1699 17531 171 27 41 chr6 146037972 146041237 -3475800 + L1_Mur2 LINE L1 2067 5297 -580 3 1699 851 96 12 104 chr6 146041237 146041400 -3475637 + B1_Mur3 SINE Alu 2 149 0 3 1699 260 264 14 14 chr6 146041509 146041582 -3475455 - MTC LTR MaLR -37 384 312 3 1699 234 0 0 0 chr6 146041605 146041631 -3475406 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1699 1099 234 113 11 chr6 146042043 146042408 -3474629 + MTC LTR MaLR 1 402 -5 3 1699 6216 161 65 26 chr6 146042408 146043619 -3473418 + MTC-int LTR MaLR 1 1258 0 3 1699 2158 151 73 18 chr6 146043619 146044018 -3473019 + MTC LTR MaLR 1 421 0 3 1699 489 358 33 0 chr6 146045169 146045320 -3471717 - RSINE1 SINE B4 -1 164 9 3 1699 641 266 57 33 chr6 146045778 146045988 -3471049 - B3 SINE B2 0 216 2 3 1699 420 20 0 0 chr6 146046300 146046349 -3470688 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 1699 275 293 42 17 chr6 146046897 146047015 -3470022 - L3 LINE CR1 -834 3655 3535 4 1699 219 220 0 0 chr6 146047651 146047701 -3469336 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1699 274 211 35 126 chr6 146047701 146047788 -3469249 - RSINE1 SINE B4 0 165 87 4 1699 1987 149 40 11 chr6 146048079 146048432 -3468605 + ORR1C1 LTR MaLR 1 363 -15 4 1699 198 71 0 0 chr6 146048641 146048669 -3468368 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 4 1699 24275 141 16 59 chr6 146048677 146051010 -3466027 - L1_Mus4 LINE L1 -3 6633 4282 4 1699 2130 57 30 20 chr6 146051010 146051314 -3465723 + IAPLTR2b LTR ERVK 1 307 -20 4 1699 24275 141 16 59 chr6 146051314 146054232 -3462805 - L1_Mus4 LINE L1 -3 4281 1337 4 1699 795 151 145 0 chr6 146054228 146054380 -3462657 - L1VL4 LINE L1 -6066 236 63 4 1699 756 303 51 47 chr6 146054483 146054826 -3462211 - MTE2a LTR MaLR -47 372 14 4 1699 27 0 0 0 chr6 146054826 146054853 -3462184 + AT_rich Low_complexity Low_complexity 1 27 0 5 1699 231 358 112 35 chr6 146054890 146055229 -3461808 + MLT2F LTR ERVL 2 366 -297 5 1699 592 228 16 31 chr6 146055775 146055902 -3461135 + B1_Mur1 SINE Alu 2 126 -23 5 1699 945 210 11 11 chr6 146056385 146056563 -3460474 - URR1B DNA MER1_type -45 180 3 5 1699 243 88 0 0 chr6 146059966 146060000 -3457037 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1699 394 153 255 39 chr6 146061172 146061274 -3455763 + B1F SINE Alu 26 149 0 5 1699 264 30 0 0 chr6 146061495 146061528 -3455509 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1699 297 0 0 0 chr6 146061528 146061560 -3455477 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 1699 234 0 0 0 chr6 146062425 146062451 -3454586 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1699 329 193 0 0 chr6 146062478 146062535 -3454502 - RSINE1 SINE B4 -50 115 59 5 1699 189 269 43 43 chr6 146063627 146063697 -3453340 - L2b LINE L2 -35 3340 3271 6 1699 294 95 0 0 chr6 146064613 146064655 -3452382 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1699 6307 258 168 35 chr6 146064669 146068477 -3448560 + L1_Mur3 LINE L1 1216 5609 -268 6 1699 195 373 54 40 chr6 146069349 146069497 -3447540 + MIRc SINE MIR 2 151 -117 6 1699 239 266 33 18 chr6 146069954 146070049 -3446988 - MIRb SINE MIR -159 117 22 6 1699 248 231 128 0 chr6 146070083 146070161 -3446876 + B1F SINE Alu 42 129 -20 6 1699 239 351 161 14 chr6 146071873 146072084 -3444953 + MER21B LTR ERV1 362 603 -260 6 1699 315 0 0 0 chr6 146072792 146072827 -3444210 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1699 965 243 10 5 chr6 146074311 146074518 -3442519 + B3 SINE B2 2 209 -7 6 1699 187 183 32 32 chr6 146074997 146075059 -3441978 + CT-rich Low_complexity Low_complexity 5 66 0 6 1699 193 236 0 35 chr6 146075382 146075439 -3441598 - L3 LINE CR1 -2803 1686 1632 7 1699 213 39 0 0 chr6 146076583 146076609 -3440428 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1699 695 280 62 77 chr6 146076636 146076895 -3440142 - B4A SINE B4 -36 256 2 7 1699 427 171 35 35 chr6 146077061 146077146 -3439891 - ORR1D1 LTR MaLR 0 374 290 7 1699 938 155 6 24 chr6 146077143 146077308 -3439729 - ORR1D1 LTR MaLR -212 162 1 7 1699 935 281 11 45 chr6 146077414 146077701 -3439336 - B4 SINE B4 -15 277 1 7 1699 4413 178 35 57 chr6 146078063 146078995 -3438042 + RMER12 LTR ERVK 1 912 -410 7 1699 399 339 40 29 chr6 146078967 146079140 -3437897 + RMER12 LTR ERVK 1148 1322 0 7 1699 263 250 26 0 chr6 146079742 146079818 -3437219 - ID4_ SINE ID -4 79 2 7 1699 201 174 42 42 chr6 146082318 146082366 -3434671 - MIR SINE MIR -63 145 98 7 1699 894 221 48 48 chr6 146083331 146083540 -3433497 - B3 SINE B2 -1 215 7 7 1699 276 269 50 25 chr6 146084254 146084334 -3432703 - L2a LINE L2 -5 3421 3340 7 1699 358 280 0 39 chr6 146084434 146084538 -3432499 + PB1D10 SINE Alu 10 109 -8 8 1699 258 256 0 0 chr6 146084551 146084629 -3432408 + GA-rich Low_complexity Low_complexity 3 80 0 8 1699 357 302 39 39 chr6 146084629 146084784 -3432253 + HAL1-3A_ME LINE L1 2285 2439 -419 8 1699 913 272 51 54 chr6 146086922 146087272 -3429765 + MTEa LTR MaLR 3 351 -28 8 1699 208 233 0 0 chr6 146087622 146087665 -3429372 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 8 1699 387 257 0 34 chr6 146089348 146089465 -3427572 + PB1D10 SINE Alu 2 114 -3 8 1699 272 317 73 73 chr6 146090049 146090253 -3426784 + ORR1D2 LTR MaLR 64 267 -103 8 1699 799 316 53 57 chr6 146090346 146090519 -3426518 + B4A SINE B4 12 194 -98 8 1699 1636 188 44 16 chr6 146090519 146090882 -3426155 - ORR1D1 LTR MaLR -1 373 1 8 1699 799 316 53 57 chr6 146090882 146090990 -3426047 + B4A SINE B4 195 292 0 8 1699 446 0 19 0 chr6 146091051 146091105 -3425932 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1699 267 186 100 17 chr6 146091106 146091166 -3425871 + ORR1D2 LTR MaLR 314 378 -1 8 1699 180 179 0 0 chr6 146091680 146091719 -3425318 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 9 1699 412 153 36 21 chr6 146091750 146091890 -3425147 + (TGGA)n Simple_repeat Simple_repeat 3 144 0 9 1699 291 351 31 81 chr6 146093158 146093319 -3423718 + B4A SINE B4 2 154 -138 9 1699 213 269 39 0 chr6 146093360 146093412 -3423625 + RSINE1 SINE B4 78 131 -34 9 1699 2288 144 49 27 chr6 146093726 146093932 -3423105 - MTC LTR MaLR -4 417 211 9 1699 402 79 0 0 chr6 146093932 146093995 -3423042 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 9 1699 1037 52 29 43 chr6 146093995 146094135 -3422902 - B1_Mus2 SINE Alu -9 138 1 9 1699 2288 144 49 27 chr6 146094135 146094335 -3422702 - MTC LTR MaLR -211 210 2 9 1699 6877 139 47 20 chr6 146094335 146095512 -3421525 - MTC-int LTR MaLR 0 1258 51 9 1699 1842 138 175 43 chr6 146095518 146095890 -3421147 - MTC LTR MaLR 0 421 1 9 1699 188 346 147 28 chr6 146096301 146096628 -3420409 + L2 LINE L2 2474 2839 -580 9 1699 237 290 147 20 chr6 146096838 146096940 -3420097 - B4 SINE B4 -77 215 101 9 1699 681 235 28 55 chr6 146096985 146097219 -3419818 + MTEa LTR MaLR 12 240 -139 9 1699 245 343 26 61 chr6 146097296 146097411 -3419626 + MTEa LTR MaLR 261 371 -8 9 1699 390 288 98 0 chr6 146097952 146098084 -3418953 - B1F2 SINE Alu -1 148 4 1 1699 602 258 90 94 chr6 146098130 146098429 -3418608 + MTEa LTR MaLR 82 379 0 1 1699 462 307 49 32 chr6 146098482 146098728 -3418309 + L1MB8 LINE L1 5929 6178 0 1 1699 207 0 0 0 chr6 146099601 146099624 -3417413 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1699 340 309 20 73 chr6 146099627 146099814 -3417223 - B3A SINE B2 -29 169 1 1 1699 668 229 76 0 chr6 146100283 146100440 -3416597 - B4A SINE B4 -121 171 3 1 1699 289 209 7 52 chr6 146101084 146101220 -3415817 + GA-rich Low_complexity Low_complexity 1 130 0 1 1699 266 300 14 0 chr6 146102286 146102356 -3414681 + (TATG)n Simple_repeat Simple_repeat 1 71 0 1 1699 924 175 4 0 chr6 146102405 146102657 -3414380 + GA-rich Low_complexity Low_complexity 1 253 0 1 1699 318 248 229 54 chr6 146103352 146103518 -3413519 + B2_Mm2 SINE B2 1 195 0 1 1699 252 0 0 0 chr6 146104654 146104682 -3412355 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1699 216 67 0 0 chr6 146104835 146104865 -3412172 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1699 978 290 36 61 chr6 146106030 146106390 -3410647 + ORR1E LTR MaLR 1 351 -8 1 1699 548 166 25 94 chr6 146107065 146107225 -3409812 + B1F SINE Alu 1 149 0 1 1699 343 266 0 31 chr6 146107275 146107372 -3409665 + GA-rich Low_complexity Low_complexity 4 97 0 1 1699 304 298 14 2 chr6 146109006 146109139 -3407898 + L1M2 LINE L1 5353 5487 -669 1 1699 660 180 35 28 chr6 146109147 146109290 -3407747 + B1_Mur4 SINE Alu 7 150 0 1 1699 396 0 0 0 chr6 146109844 146109888 -3407149 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1699 229 274 0 0 chr6 146109890 146109941 -3407096 + MIR SINE MIR 210 260 -2 1 1699 207 88 0 0 chr6 146110176 146110210 -3406827 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1699 659 194 36 36 chr6 146110224 146110363 -3406674 + B3A SINE B2 3 141 -57 1 1699 628 168 20 0 chr6 146111501 146111602 -3405435 + B1_Mur2 SINE Alu 46 148 -1 1 1699 564 89 0 0 chr6 146111987 146112066 -3404971 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1699 386 43 58 0 chr6 146112190 146112259 -3404778 + (TGGGGG)n Simple_repeat Simple_repeat 3 75 0 1 1699 246 32 0 0 chr6 146112417 146112448 -3404589 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1699 594 259 79 12 chr6 146112503 146112594 -3404443 - B4 SINE B4 -117 175 73 1 1699 180 111 0 0 chr6 146112594 146112621 -3404416 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1699 594 259 79 12 chr6 146112621 146112693 -3404344 - B4 SINE B4 -220 72 1 1 1699 781 245 48 5 chr6 146113281 146113470 -3403567 + B3A SINE B2 2 198 0 1 1699 1367 85 21 11 chr6 146114411 146114601 -3402436 - B2_Mm2 SINE B2 -2 193 2 1 1699 360 43 0 0 chr6 146117040 146117086 -3399951 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1699 296 24 24 0 chr6 146117239 146117280 -3399757 + (TTG)n Simple_repeat Simple_repeat 1 42 0 1 1699 728 18 172 26 chr6 146117280 146117385 -3399652 - B1_Mm SINE Alu -13 134 10 1 1699 244 219 0 30 chr6 146117385 146117451 -3399586 + MLT1A1 LTR MaLR 345 408 0 1 1699 668 266 110 12 chr6 146119299 146119626 -3397411 - ORR1E LTR MaLR 0 359 1 1 1699 24 0 0 0 chr6 146119947 146119971 -3397066 + AT_rich Low_complexity Low_complexity 1 24 0 1 1699 1006 61 20 0 chr6 146120020 146120167 -3396870 - URR1A DNA MER1_type 0 226 77 1 1699 427 171 53 71 chr6 146121419 146121532 -3395505 + PB1D10 SINE Alu 5 115 -2 1 1699 587 244 25 54 chr6 146124227 146124431 -3392606 - B3A SINE B2 0 198 1 1 1699 323 42 42 0 chr6 146125200 146125248 -3391789 + (CAAAA)n Simple_repeat Simple_repeat 5 54 0 1 1699 257 308 51 0 chr6 146125425 146125503 -3391534 + ID4_ SINE ID 2 83 0 1 1699 26 30 0 0 chr6 146126531 146126564 -3390473 + AT_rich Low_complexity Low_complexity 1 33 0 1 1699 26 0 0 0 chr6 146127728 146127754 -3389283 + AT_rich Low_complexity Low_complexity 1 26 0 1 1699 22 35 0 0 chr6 146127778 146127807 -3389230 + AT_rich Low_complexity Low_complexity 1 29 0 1 1699 198 71 0 0 chr6 146128399 146128427 -3388610 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1699 2976 39 3 0 chr6 146129258 146129613 -3387424 - L1_Mus1 LINE L1 0 6567 6212 1 1699 520 280 25 0 chr6 146129670 146129788 -3387249 + RSINE1 SINE B4 3 123 -42 1 1699 180 77 0 0 chr6 146129790 146129816 -3387221 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1699 868 298 47 7 chr6 146130089 146130366 -3386671 + B4 SINE B4 1 288 -4 1 1699 184 164 0 68 chr6 146130395 146130454 -3386583 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 1699 251 261 33 22 chr6 146131373 146131463 -3385574 + MLT1A1 LTR MaLR 302 392 -16 1 1699 1008 200 43 19 chr6 146131515 146131724 -3385313 + B3 SINE B2 3 216 0 1 1699 518 108 12 0 chr6 146131724 146131807 -3385230 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 1 1699 215 264 19 0 chr6 146132150 146132203 -3384834 - B4A SINE B4 -182 110 57 1 1699 748 204 7 14 chr6 146132376 146132520 -3384517 + B1F SINE Alu 5 147 -2 1 1699 292 257 69 119 chr6 146136526 146136550 -3380487 + ID_B1 SINE B4 67 217 -7 1 1699 379 291 74 59 chr6 146136550 146136685 -3380352 + B1F SINE Alu 6 142 -7 1 1699 663 254 0 0 chr6 146137022 146137160 -3379877 + ID_B1 SINE B4 86 223 -1 1 1699 659 234 80 20 chr6 146137186 146137387 -3379650 + B3A SINE B2 1 213 -3 1 1699 289 253 13 13 chr6 146138160 146138236 -3378801 - B3 SINE B2 -5 211 136 1 1699 443 274 156 22 chr6 146139431 146139655 -3377382 + MTD LTR MaLR 166 419 0 1 1699 243 0 0 0 chr6 146139823 146139850 -3377187 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1699 745 245 176 18 chr6 146139879 146140157 -3376880 + ORR1E LTR MaLR 1 322 -37 1 1699 262 191 14 81 chr6 146140176 146140250 -3376787 - B3 SINE B2 -139 77 9 1 1699 26 50 0 0 chr6 146140287 146140327 -3376710 + AT_rich Low_complexity Low_complexity 1 40 0 1 1699 183 319 0 0 chr6 146140497 146140544 -3376493 + L3 LINE CR1 3990 4036 -453 1 1699 313 336 31 57 chr6 146140795 146141022 -3376015 + B4A SINE B4 50 270 -22 1 1699 333 0 0 0 chr6 146141042 146141079 -3375958 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1699 499 188 117 29 chr6 146141864 146142001 -3375036 - B1_Mur2 SINE Alu 0 149 1 1 1699 3250 128 145 10 chr6 146142045 146142341 -3374696 + RMER6C LTR ERVK 1 352 -338 1 1699 300 82 49 0 chr6 146142341 146142402 -3374635 + (CAGTG)n Simple_repeat Simple_repeat 2 65 0 1 1699 3250 128 145 10 chr6 146142402 146142712 -3374325 + RMER6C LTR ERVK 353 689 -1 1 1699 396 295 31 62 chr6 146143742 146143768 -3373269 - B4A SINE B4 -4 288 270 1 1699 261 83 0 0 chr6 146143768 146143804 -3373233 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1699 396 295 31 62 chr6 146143804 146143907 -3373130 - B4A SINE B4 -23 269 163 1 1699 421 276 39 23 chr6 146143993 146144123 -3372914 - MIR SINE MIR -100 162 31 1 1700 319 271 69 81 chr6 146145496 146145633 -3371404 + B3 SINE B2 44 184 -32 1 1700 3377 43 5 0 chr6 146145633 146146027 -3371010 + MTA_Mm LTR MaLR 1 396 0 1 1700 319 271 69 81 chr6 146146027 146146062 -3370975 + B3 SINE B2 185 213 -3 1 1700 1138 70 0 21 chr6 146148110 146148255 -3368782 + B1_Mus2 SINE Alu 1 142 -5 1 1700 1247 84 0 6 chr6 146148255 146148434 -3368603 + (GAA)n Simple_repeat Simple_repeat 2 179 0 1 1700 348 216 0 0 chr6 146148920 146149022 -3368015 + (CA)n Simple_repeat Simple_repeat 1 102 0 1 1700 372 289 6 31 chr6 146149034 146149111 -3367926 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1700 444 37 0 0 chr6 146149111 146149165 -3367872 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1700 372 289 6 31 chr6 146149165 146149248 -3367789 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1700 428 273 0 9 chr6 146149962 146150073 -3366964 - B1F SINE Alu -31 118 9 1 1700 520 155 21 14 chr6 146150373 146150517 -3366520 + (CA)n Simple_repeat Simple_repeat 2 146 0 1 1700 354 23 0 0 chr6 146150572 146150615 -3366422 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1700 731 93 9 0 chr6 146150663 146150771 -3366266 + MusHAL1 LINE L1 4 112 -3242 1 1700 9450 75 21 26 chr6 146150765 146152127 -3364910 + MusHAL1 LINE L1 1989 3344 -9 1 1700 255 61 0 0 chr6 146152127 146152160 -3364877 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1 1700 1509 99 16 8 chr6 146152160 146152405 -3364632 + RLTR22_Mur LTR ERVK 1019 1265 -583 1 1700 6685 130 6 13 chr6 146154224 146155403 -3361634 + Lx3C LINE L1 5477 6642 -334 1 1700 507 17 0 0 chr6 146156708 146156768 -3360269 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1700 1832 194 48 13 chr6 146158571 146158968 -3358069 + MTD LTR MaLR 2 412 -7 1 1700 446 329 69 6 chr6 146159173 146159332 -3357705 + B3A SINE B2 2 170 -28 1 1700 279 0 0 0 chr6 146159337 146159368 -3357669 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1700 504 244 16 0 chr6 146159403 146159526 -3357511 + ID_B1 SINE B4 99 223 -1 1 1700 604 239 51 0 chr6 146159606 146159744 -3357293 - RSINE1 SINE B4 -18 147 3 1 1700 511 286 30 30 chr6 146159815 146160013 -3357024 + MER58A DNA MER1_type 1 198 -26 1 1700 296 86 14 41 chr6 146160244 146160317 -3356720 + (TTTTG)n Simple_repeat Simple_repeat 1 71 0 1 1700 703 198 25 13 chr6 146160605 146160764 -3356273 + B2_Mm2 SINE B2 10 170 -25 1 1700 680 138 52 20 chr6 146160949 146161454 -3355583 + (TG)n Simple_repeat Simple_repeat 1 521 0 1 1700 216 308 86 9 chr6 146161574 146161679 -3355358 - PB1D10 SINE Alu -4 113 1 1 1700 260 261 56 22 chr6 146161594 146161684 -3355353 - ID_B1 SINE B4 -54 170 78 1 1700 261 178 0 0 chr6 146161855 146161900 -3355137 - B4A SINE B4 0 292 248 1 1700 381 213 28 30 chr6 146161958 146162088 -3354949 - ORR1D2 LTR MaLR -4 370 241 1 1700 988 188 72 40 chr6 146162054 146162116 -3354921 + RMER2 LTR ERV1 309 366 -201 2 1700 216 0 0 0 chr6 146162116 146162140 -3354897 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1700 988 188 72 40 chr6 146162140 146162327 -3354710 + RMER2 LTR ERV1 367 566 -1 2 1700 877 110 184 24 chr6 146162327 146162495 -3354542 + ORR1B2 LTR MaLR 173 367 0 2 1700 350 154 5 0 chr6 146162574 146162638 -3354399 + L1MA4 LINE L1 6113 6178 -125 2 1700 395 193 11 0 chr6 146162669 146162757 -3354280 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 2 1700 895 202 103 37 chr6 146162781 146163023 -3354014 - ORR1D2 LTR MaLR -111 259 2 1 1700 310 286 19 75 chr6 146163023 146163122 -3353915 - B4A SINE B4 -199 93 1 2 1700 555 43 0 0 chr6 146164310 146164380 -3352657 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 1700 488 283 39 26 chr6 146164383 146164539 -3352498 - B4A SINE B4 -18 274 117 1 1700 234 150 0 0 chr6 146164985 146165025 -3352012 + (CAT)n Simple_repeat Simple_repeat 3 42 0 2 1700 948 255 48 73 chr6 146165368 146165724 -3351313 - ORR1E LTR MaLR 0 359 13 2 1700 290 21 21 0 chr6 146167269 146167317 -3349720 - RMER17C LTR ERVK -136 274 226 2 1700 555 16 0 0 chr6 146167327 146167391 -3349646 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 1700 939 179 30 25 chr6 146167792 146167992 -3349045 + URR1B DNA MER1_type 2 202 -23 2 1700 688 268 133 3 chr6 146168991 146169276 -3347761 + L1ME4a LINE L1 5546 5867 -257 2 1700 513 239 0 49 chr6 146169420 146169543 -3347494 - PB1D7 SINE Alu -2 118 2 2 1700 234 0 0 0 chr6 146172661 146172687 -3344350 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1700 200 271 0 0 chr6 146172819 146172889 -3344148 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1700 446 209 113 0 chr6 146172958 146173073 -3343964 + B3A SINE B2 3 130 -68 2 1700 2146 115 75 3 chr6 146175376 146175725 -3341312 - L1_Mur2 LINE L1 -1597 4280 3907 2 1700 411 38 0 0 chr6 146178487 146178540 -3338497 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1700 465 90 0 0 chr6 146178541 146178608 -3338429 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 1700 794 193 12 0 chr6 146180129 146180295 -3336742 + Lx4A LINE L1 6890 7057 -1 2 1700 522 83 0 0 chr6 146180728 146180800 -3336237 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1700 210 143 0 0 chr6 146181107 146181142 -3335895 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 2 1700 1563 211 105 3 chr6 146181413 146181793 -3335244 - MTD LTR MaLR 0 419 1 2 1700 616 205 110 18 chr6 146181797 146181961 -3335076 + B3A SINE B2 16 194 -4 2 1700 196 370 32 40 chr6 146182942 146183066 -3333971 - L2a LINE L2 -7 3419 3297 2 1700 1125 278 31 88 chr6 146184553 146184940 -3332097 - MTE2a LTR MaLR 0 379 15 2 1700 329 290 159 6 chr6 146185007 146185177 -3331860 + MIR SINE MIR 10 205 -57 2 1700 546 198 20 0 chr6 146185330 146185431 -3331606 + B3A SINE B2 2 104 -94 2 1700 1086 229 101 53 chr6 146185436 146185773 -3331264 + ORR1D2 LTR MaLR 11 363 -7 2 1700 326 293 81 8 chr6 146186096 146186220 -3330817 - B1F1 SINE Alu -12 137 5 2 1700 864 87 0 0 chr6 146186222 146186349 -3330688 + (TG)n Simple_repeat Simple_repeat 2 128 0 2 1700 848 269 120 42 chr6 146188286 146188736 -3328301 + Lx8 LINE L1 6988 7472 -1 2 1700 1172 175 19 5 chr6 146189185 146189397 -3327640 + B3 SINE B2 2 216 0 2 1700 672 252 12 19 chr6 146190044 146190206 -3326831 + RSINE1 SINE B4 3 163 -2 2 1700 311 267 23 0 chr6 146190249 146190335 -3326702 + RSINE1 SINE B4 2 89 -76 2 1700 897 280 113 21 chr6 146191806 146192134 -3324903 + MTEb LTR MaLR 20 377 -2 2 1700 230 143 25 25 chr6 146192213 146192292 -3324745 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1700 2501 139 26 5 chr6 146192315 146192698 -3324339 + ORR1B1 LTR MaLR 1 391 -3 2 1700 5525 182 60 1 chr6 146192698 146193856 -3323181 + ORR1B1-int LTR MaLR 9 1234 -275 2 1700 230 363 88 19 chr6 146195392 146195552 -3321485 - RMER30 DNA MER1_type -19 183 13 2 1700 417 206 21 0 chr6 146195725 146195822 -3321215 + B1F SINE Alu 42 140 -9 2 1700 315 0 0 0 chr6 146196390 146196425 -3320612 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1700 2097 77 0 54 chr6 146196565 146196882 -3320155 + ORR1A2 LTR MaLR 20 319 -8 2 1700 418 175 133 19 chr6 146196864 146196969 -3320068 + URR1B DNA MER1_type 109 225 0 2 1700 275 311 17 0 chr6 146198257 146198376 -3318661 + (CA)n Simple_repeat Simple_repeat 2 122 0 2 1700 239 183 37 37 chr6 146198438 146198574 -3318463 + (CATA)n Simple_repeat Simple_repeat 2 137 0 2 1700 215 272 53 20 chr6 146199397 146199547 -3317490 + (CCCTA)n Simple_repeat Simple_repeat 2 156 0 2 1700 295 272 11 39 chr6 146199585 146199765 -3317272 + C-rich Low_complexity Low_complexity 3 177 0 2 1700 183 42 0 0 chr6 146199859 146199883 -3317154 + (TCCCC)n Simple_repeat Simple_repeat 5 28 0 2 1700 212 326 14 14 chr6 146200033 146200176 -3316861 + C-rich Low_complexity Low_complexity 5 147 0 2 1700 256 297 11 28 chr6 146200214 146200394 -3316643 + C-rich Low_complexity Low_complexity 1 177 0 2 1700 411 68 0 83 chr6 146200432 146200576 -3316461 + C-rich Low_complexity Low_complexity 2 133 0 2 1700 319 243 0 51 chr6 146200911 146200989 -3316048 - PB1D10 SINE Alu -1 116 43 2 1700 377 132 29 0 chr6 146201594 146201662 -3315375 - ID4_ SINE ID -11 72 3 2 1700 372 280 69 46 chr6 146202046 146202263 -3314774 + L1MB7 LINE L1 5446 5667 -507 2 1700 289 267 66 11 chr6 146202272 146202363 -3314674 + B1F SINE Alu 1 96 -53 2 1700 252 308 8 49 chr6 146202569 146202692 -3314345 + L1MB7 LINE L1 5919 6036 -148 2 1700 225 186 129 0 chr6 146202713 146202783 -3314254 + L1MB7 LINE L1 6106 6184 0 2 1700 21 0 0 0 chr6 146202821 146202842 -3314195 + AT_rich Low_complexity Low_complexity 1 21 0 2 1700 216 0 0 0 chr6 146203073 146203097 -3313940 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1700 297 0 0 0 chr6 146203271 146203304 -3313733 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1700 282 278 65 22 chr6 146203831 146203923 -3313114 + PB1D10 SINE Alu 7 102 -15 2 1700 822 264 106 47 chr6 146204357 146204631 -3312406 - B4A SINE B4 -1 291 2 2 1700 669 106 0 0 chr6 146204763 146204876 -3312161 + (CA)n Simple_repeat Simple_repeat 1 113 0 2 1700 306 0 0 0 chr6 146206168 146206202 -3310835 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1700 1033 188 69 0 chr6 146206831 146207033 -3310004 + B3 SINE B2 1 216 0 2 1700 38 51 0 0 chr6 146207148 146207207 -3309830 + AT_rich Low_complexity Low_complexity 1 59 0 2 1700 234 0 0 0 chr6 146207378 146207404 -3309633 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 2 1700 381 117 0 0 chr6 146208512 146208572 -3308465 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1700 230 348 0 11 chr6 146209050 146209140 -3307897 + G-rich Low_complexity Low_complexity 4 92 0 2 1700 522 277 15 0 chr6 146209540 146209670 -3307367 - ID_B1 SINE B4 -3 221 90 2 1700 768 233 261 10 chr6 146209898 146210193 -3306844 + Lx8 LINE L1 6966 7334 -139 2 1700 1029 71 0 7 chr6 146210223 146210365 -3306672 - L1Md_F2 LINE L1 -12 6570 6430 2 1700 35156 72 6 1 chr6 146210365 146214216 -3302821 - L1VL1 LINE L1 -39 5844 1974 2 1700 197 33 33 0 chr6 146214216 146214246 -3302791 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1700 35156 75 4 31 chr6 146214246 146215874 -3301163 - L1VL1 LINE L1 -3910 1973 397 2 1700 432 0 0 0 chr6 146215923 146215971 -3301066 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1700 3993 110 5 8 chr6 146216274 146216861 -3300176 + Lx2 LINE L1 6407 6991 -6 2 1700 244 309 0 0 chr6 146217385 146217453 -3299584 - MER2B DNA MER2_type -86 250 183 2 1700 315 71 0 0 chr6 146217455 146217497 -3299540 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1700 784 233 37 0 chr6 146217498 146217661 -3299376 - B3A SINE B2 -29 169 1 2 1700 21 0 0 0 chr6 146217680 146217701 -3299336 + AT_rich Low_complexity Low_complexity 1 21 0 2 1700 348 315 97 34 chr6 146217888 146218157 -3298880 + B4A SINE B4 1 286 -6 2 1700 854 248 14 19 chr6 146221887 146222101 -3294936 + B3 SINE B2 1 213 -3 2 1700 967 265 87 20 chr6 146222898 146223244 -3293793 - MTD LTR MaLR -20 399 18 2 1700 607 242 78 12 chr6 146223255 146223422 -3293615 + B3A SINE B2 3 180 -18 2 1700 1201 62 0 7 chr6 146224072 146224219 -3292818 + B1_Mm SINE Alu 2 147 0 2 1700 210 136 0 0 chr6 146224221 146224265 -3292772 + (A)n Simple_repeat Simple_repeat 1 44 0 2 1700 1729 219 81 77 chr6 146224865 146225360 -3291677 + RLTR18B LTR ERVK 16 512 0 2 1700 300 83 0 0 chr6 146226687 146226735 -3290302 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 2 1700 407 229 125 17 chr6 146226836 146226956 -3290081 - B1F SINE Alu -16 133 1 2 1700 2543 59 22 0 chr6 146227362 146227682 -3289355 + ORR1A2 LTR MaLR 1 327 0 2 1700 445 327 60 39 chr6 146228385 146228617 -3288420 + MLT1B LTR MaLR 20 256 -134 2 1700 576 250 17 72 chr6 146228765 146228946 -3288091 + B4A SINE B4 4 174 -118 2 1700 1140 269 151 11 chr6 146228964 146229328 -3287709 - MTD LTR MaLR 0 419 5 2 1700 265 179 158 49 chr6 146229346 146229428 -3287609 + B4 SINE B4 201 291 -1 2 1700 623 245 226 15 chr6 146229969 146230234 -3286803 - ORR1E LTR MaLR 0 379 29 2 1700 315 0 0 0 chr6 146231588 146231623 -3285414 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1700 477 0 0 0 chr6 146232213 146232266 -3284771 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1700 958 186 47 11 chr6 146232927 146233117 -3283920 + RMER5 LTR ERV1 1 197 -337 2 1700 431 241 98 70 chr6 146234466 146234593 -3282444 + B1_Mur2 SINE Alu 2 135 -14 2 1700 237 65 0 0 chr6 146234593 146234624 -3282413 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 2 1700 191 61 0 29 chr6 146234625 146234659 -3282378 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 2 1700 431 241 98 70 chr6 146234659 146234672 -3282365 + B1_Mur2 SINE Alu 136 148 -1 2 1700 1108 57 50 0 chr6 146234777 146234918 -3282119 - B1_Mus1 SINE Alu 0 148 1 2 1700 353 282 94 149 chr6 146235716 146236004 -3281033 + MLT1D LTR MaLR 2 273 -232 2 1700 1087 211 100 141 chr6 146236007 146236377 -3280660 + ORR1B1 LTR MaLR 1 355 -39 2 1700 1662 29 5 5 chr6 146236377 146236583 -3280454 + L1Md_F3 LINE L1 6378 6583 -1 3 1700 787 162 0 208 chr6 146236583 146236664 -3280373 + ORR1A0 LTR MaLR 302 346 0 3 1700 492 324 93 6 chr6 146236664 146236842 -3280195 + MLT1D LTR MaLR 275 468 -37 2 1700 369 0 0 0 chr6 146237221 146237262 -3279775 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1700 1168 244 153 23 chr6 146237318 146237670 -3279367 + MTD LTR MaLR 6 403 -16 3 1700 1403 45 6 0 chr6 146237703 146237882 -3279155 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1700 748 230 59 0 chr6 146237889 146238076 -3278961 - B3 SINE B2 -17 199 2 3 1700 192 254 0 0 chr6 146238188 146238247 -3278790 + GA-rich Low_complexity Low_complexity 4 62 0 3 1700 749 242 88 0 chr6 146238756 146238950 -3278087 - B4 SINE B4 -81 211 1 3 1700 432 0 0 0 chr6 146239007 146239055 -3277982 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 3 1700 277 231 91 2 chr6 146239653 146239727 -3277310 + ID2 SINE ID 1 79 -4 3 1700 223 248 137 34 chr6 146239660 146239777 -3277260 + B3A SINE B2 9 137 -61 3 1700 180 342 43 35 chr6 146240961 146241076 -3275961 - MIR SINE MIR -63 145 30 3 1700 229 361 34 27 chr6 146243419 146243567 -3273470 + L2 LINE L2 2253 2401 -1018 3 1700 274 172 0 121 chr6 146243776 146243842 -3273195 - B3A SINE B2 -5 193 136 3 1700 443 315 94 15 chr6 146243841 146244044 -3272993 - MLT1A0 LTR MaLR -63 302 84 3 1700 688 321 72 42 chr6 146244029 146244361 -3272676 + MLT1B LTR MaLR 16 357 -33 3 1700 22 0 0 0 chr6 146244597 146244619 -3272418 + AT_rich Low_complexity Low_complexity 1 22 0 3 1700 1319 61 42 62 chr6 146244787 146244979 -3272058 + B2_Mm2 SINE B2 1 188 -7 3 1700 183 156 0 0 chr6 146245264 146245296 -3271741 + A-rich Low_complexity Low_complexity 1 32 0 3 1700 953 154 11 0 chr6 146245377 146245552 -3271485 + GA-rich Low_complexity Low_complexity 3 179 0 3 1700 204 200 0 0 chr6 146245858 146245893 -3271144 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1700 282 29 0 0 chr6 146246459 146246494 -3270543 + (TGG)n Simple_repeat Simple_repeat 1 35 0 3 1700 369 0 0 0 chr6 146246494 146246535 -3270502 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1700 273 189 32 0 chr6 146246663 146246758 -3270279 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 1700 627 256 24 35 chr6 146247348 146247518 -3269519 + B3 SINE B2 49 216 0 3 1700 483 332 104 27 chr6 146247643 146248017 -3269020 + MLT1C LTR MaLR 1 403 -64 3 1700 180 0 0 0 chr6 146248152 146248172 -3268865 + (TGGA)n Simple_repeat Simple_repeat 1 20 0 3 1700 723 115 23 0 chr6 146248755 146248885 -3268152 + (GGGA)n Simple_repeat Simple_repeat 1 133 0 3 1700 455 239 18 31 chr6 146248898 146249130 -3267907 + GA-rich Low_complexity Low_complexity 1 228 0 3 1700 300 256 74 10 chr6 146249756 146249868 -3267169 + B3A SINE B2 2 119 -74 3 1700 250 358 12 0 chr6 146250375 146250456 -3266581 + ID2 SINE ID 2 83 0 3 1700 22 0 0 0 chr6 146250464 146250486 -3266551 + AT_rich Low_complexity Low_complexity 1 22 0 3 1700 810 172 0 0 chr6 146251490 146251722 -3265315 + (TG)n Simple_repeat Simple_repeat 1 232 0 3 1700 323 123 51 34 chr6 146251784 146251843 -3265194 - HAL1-3A_ME LINE L1 -823 2035 1976 3 1700 543 117 0 0 chr6 146251850 146251944 -3265093 + (TG)n Simple_repeat Simple_repeat 1 94 0 3 1700 532 292 233 0 chr6 146251954 146252190 -3264847 - B4 SINE B4 0 292 2 3 1700 203 339 0 0 chr6 146252422 146252484 -3264553 + C-rich Low_complexity Low_complexity 5 66 0 3 1700 278 271 27 18 chr6 146252486 146252572 -3264465 - PB1D10 SINE Alu -21 99 7 3 1700 262 318 127 0 chr6 146252733 146252859 -3264178 + B4A SINE B4 22 163 -129 3 1700 1140 265 52 80 chr6 146254488 146254874 -3262163 + MTEa LTR MaLR 5 379 0 3 1700 306 144 51 57 chr6 146255083 146255260 -3261777 + (ATATG)n Simple_repeat Simple_repeat 2 177 0 3 1700 308 240 83 64 chr6 146255349 146255505 -3261532 - HAL1-2a_MD LINE L1 -529 2495 2337 3 1700 189 161 48 16 chr6 146255513 146255576 -3261461 + (ATATG)n Simple_repeat Simple_repeat 4 68 0 3 1700 302 331 63 47 chr6 146255617 146255871 -3261166 + L1ME4a LINE L1 5774 6031 -93 3 1700 694 239 35 60 chr6 146255955 146256155 -3260882 - B3A SINE B2 0 198 4 3 1700 454 261 134 0 chr6 146256351 146256470 -3260567 - ID_B1 SINE B4 0 224 90 3 1700 248 259 84 26 chr6 146257069 146257211 -3259826 - RLTR33 LTR ERVK -320 358 249 3 1700 24 0 0 0 chr6 146258597 146258621 -3258416 + AT_rich Low_complexity Low_complexity 1 24 0 3 1700 317 281 92 92 chr6 146258817 146258958 -3258079 + B4A SINE B4 11 151 -141 3 1700 344 301 12 35 chr6 146258986 146259072 -3257965 + RSINE1 SINE B4 82 165 0 3 1700 189 0 0 0 chr6 146259879 146259900 -3257137 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1700 689 261 89 13 chr6 146259903 146260128 -3256909 - B4A SINE B4 -27 265 24 3 1700 381 209 99 0 chr6 146260325 146260416 -3256621 - MER2 DNA MER2_type -152 193 94 3 1700 210 288 15 0 chr6 146260904 146260970 -3256067 + G-rich Low_complexity Low_complexity 1 67 0 3 1700 336 261 15 7 chr6 146261845 146261945 -3255092 + ORR1E LTR MaLR 2 100 -270 3 1700 229 273 18 0 chr6 146261937 146261992 -3255045 + RMER30 DNA MER1_type 5 60 -142 3 1700 387 0 0 0 chr6 146261999 146262042 -3254995 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1700 404 307 50 35 chr6 146262049 146262372 -3254665 + MTEa LTR MaLR 40 378 -1 3 1700 327 350 63 15 chr6 146263221 146263427 -3253610 - Tigger7 DNA MER2_type -2084 407 192 3 1700 274 169 55 27 chr6 146264086 146264159 -3252878 + MTEb LTR MaLR 253 327 -52 3 1700 241 367 84 32 chr6 146264169 146264324 -3252713 + MTE-int LTR MaLR 369 531 -1049 3 1700 321 302 103 100 chr6 146264353 146264445 -3252592 + ORR1D2 LTR MaLR 5 93 -277 3 1700 410 174 513 7 chr6 146264445 146264595 -3252442 - URR1A DNA MER1_type 0 226 1 3 1700 321 302 103 100 chr6 146264595 146264851 -3252186 + ORR1D2 LTR MaLR 94 353 -17 3 1700 863 349 131 33 chr6 146264895 146265567 -3251470 + MTE-int LTR MaLR 595 1332 -248 3 1700 388 330 178 26 chr6 146266087 146266542 -3250495 - L2 LINE L2 -757 2662 2139 3 1700 795 283 13 89 chr6 146266588 146266902 -3250135 + B4 SINE B4 1 290 -2 3 1700 22 35 0 0 chr6 146267996 146268025 -3249012 + AT_rich Low_complexity Low_complexity 1 29 0 3 1700 554 200 38 0 chr6 146268025 146268130 -3248907 - RSINE1 SINE B4 -51 114 6 3 1700 1928 170 76 3 chr6 146269099 146269441 -3247596 + ORR1B2 LTR MaLR 1 367 0 3 1700 426 294 6 0 chr6 146269531 146269708 -3247329 + (CATG)n Simple_repeat Simple_repeat 1 178 0 3 1700 494 273 0 0 chr6 146269744 146269916 -3247121 + (CATG)n Simple_repeat Simple_repeat 1 172 0 3 1700 238 309 13 105 chr6 146270245 146270397 -3246640 - MIRb SINE MIR -130 138 1 3 1700 215 306 188 9 chr6 146270384 146270496 -3246541 + MER5A DNA MER1_type 1 132 -57 3 1700 346 358 37 43 chr6 146272247 146272434 -3244603 - MIRb SINE MIR -26 242 57 3 1700 195 171 0 68 chr6 146272975 146273019 -3244018 + L2 LINE L2 356 396 -3023 3 1700 289 279 29 0 chr6 146273974 146274042 -3242995 + B4A SINE B4 86 155 -137 3 1700 1011 279 46 18 chr6 146274822 146275106 -3241931 - B4A SINE B4 0 292 1 3 1701 22 0 0 0 chr6 146276648 146276670 -3240367 + AT_rich Low_complexity Low_complexity 1 22 0 3 1701 27 0 0 0 chr6 146278367 146278394 -3238643 + AT_rich Low_complexity Low_complexity 1 27 0 3 1701 325 268 0 12 chr6 146280552 146280635 -3236402 + ID4 SINE ID 2 83 0 3 1701 266 325 0 12 chr6 146281526 146281610 -3235427 + G-rich Low_complexity Low_complexity 1 83 0 3 1701 1229 55 0 0 chr6 146281690 146281836 -3235201 + B1_Mm SINE Alu 2 147 0 3 1701 331 242 104 75 chr6 146282751 146282885 -3234152 - ID_B1 SINE B4 0 224 87 3 1701 892 164 6 0 chr6 146283043 146283208 -3233829 - URR1B DNA MER1_type 0 225 60 3 1701 288 309 0 0 chr6 146283617 146283756 -3233281 + (CA)n Simple_repeat Simple_repeat 1 139 0 3 1701 372 258 0 0 chr6 146285570 146285694 -3231343 + (CA)n Simple_repeat Simple_repeat 1 124 0 3 1701 257 170 20 50 chr6 146287815 146287914 -3229123 + GA-rich Low_complexity Low_complexity 4 99 0 3 1701 333 221 11 23 chr6 146288728 146288816 -3228221 + B3 SINE B2 128 214 -2 3 1701 21 36 0 0 chr6 146288816 146288844 -3228193 + AT_rich Low_complexity Low_complexity 1 28 0 3 1701 300 304 105 18 chr6 146289290 146289461 -3227576 - B4A SINE B4 -105 187 2 3 1701 183 80 0 0 chr6 146289544 146289569 -3227468 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 3 1701 883 274 9 6 chr6 146290142 146290470 -3226567 - MTD LTR MaLR -14 365 23 3 1701 856 203 39 12 chr6 146290732 146290921 -3226116 + B3A SINE B2 1 195 0 3 1701 1556 239 45 11 chr6 146291034 146291415 -3225622 - MTD LTR MaLR -14 405 12 3 1701 253 270 0 0 chr6 146292435 146292498 -3224539 - RSINE1 SINE B4 -100 65 3 3 1701 923 232 24 5 chr6 146293331 146293543 -3223494 + B3 SINE B2 1 216 0 3 1701 597 185 130 31 chr6 146294005 146294167 -3222870 + B3A SINE B2 1 178 -20 3 1701 372 128 0 0 chr6 146294357 146294435 -3222602 + (A)n Simple_repeat Simple_repeat 1 78 0 3 1701 1053 103 0 0 chr6 146294441 146294577 -3222460 + B1_Mm SINE Alu 3 138 -9 3 1701 292 0 70 0 chr6 146294577 146294620 -3222417 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 1701 229 297 60 119 chr6 146295141 146295163 -3221874 + B4 SINE B4 69 224 -66 3 1701 528 279 21 28 chr6 146295163 146295307 -3221730 + B1F2 SINE Alu 6 148 -1 3 1701 684 0 0 0 chr6 146295477 146295553 -3221484 + (CCCCAG)n Simple_repeat Simple_repeat 6 81 0 4 1701 375 225 62 6 chr6 146296564 146296725 -3220312 + (TAGA)n Simple_repeat Simple_repeat 3 172 0 4 1701 414 39 0 0 chr6 146296836 146296888 -3220149 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1701 437 216 0 38 chr6 146296888 146297153 -3219884 + (CA)n Simple_repeat Simple_repeat 1 254 0 4 1701 1371 60 31 46 chr6 146297429 146297623 -3219414 + B2_Mm2 SINE B2 1 191 -4 4 1701 222 196 0 56 chr6 146297794 146297848 -3219189 + CT-rich Low_complexity Low_complexity 4 54 0 4 1701 226 158 0 0 chr6 146297850 146297888 -3219149 - B1F SINE Alu -15 134 97 4 1701 1027 257 15 139 chr6 146298756 146299158 -3217879 + MTE2a LTR MaLR 19 370 -9 4 1701 237 250 13 13 chr6 146299347 146299424 -3217613 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 4 1701 995 192 64 5 chr6 146299462 146299666 -3217371 - B3 SINE B2 0 216 1 4 1701 516 291 0 6 chr6 146299866 146299892 -3217145 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1701 339 25 0 0 chr6 146299892 146299932 -3217105 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1701 516 291 0 6 chr6 146299932 146300085 -3216952 + (CA)n Simple_repeat Simple_repeat 2 154 0 4 1701 252 0 0 0 chr6 146300146 146300174 -3216863 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 1701 264 100 0 0 chr6 146300174 146300213 -3216824 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1701 600 228 204 9 chr6 146301117 146301338 -3215699 + MTEb LTR MaLR 13 276 -103 4 1701 246 176 87 43 chr6 146301465 146301538 -3215499 + MIRc SINE MIR 96 179 -89 4 1701 3302 273 126 17 chr6 146301840 146303093 -3213944 + Lx8 LINE L1 6173 7473 0 4 1701 407 221 44 44 chr6 146303387 146303524 -3213513 + RSINE1 SINE B4 3 139 -26 4 1701 396 0 0 0 chr6 146303704 146303748 -3213289 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 4 1701 345 277 86 38 chr6 146303757 146303862 -3213175 - ID_B1 SINE B4 -31 193 84 4 1701 543 191 20 0 chr6 146304744 146304896 -3212141 + CT-rich Low_complexity Low_complexity 1 155 0 4 1701 188 182 23 0 chr6 146304926 146304970 -3212067 + CT-rich Low_complexity Low_complexity 1 45 0 4 1701 574 259 27 47 chr6 146305175 146305325 -3211712 + B3A SINE B2 36 182 -16 4 1701 900 182 0 0 chr6 146305337 146305513 -3211524 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 1701 441 246 106 56 chr6 146306011 146306153 -3210884 + B1F SINE Alu 1 149 0 4 1701 500 193 0 33 chr6 146307131 146307222 -3209815 - PB1D10 SINE Alu -17 100 13 4 1701 248 359 13 13 chr6 146307152 146307231 -3209806 - B4A SINE B4 -125 167 89 4 1701 284 296 0 0 chr6 146307651 146307722 -3209315 + PB1D7 SINE Alu 1 71 -49 4 1701 219 239 0 0 chr6 146307722 146307789 -3209248 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1701 239 250 140 11 chr6 146308410 146308503 -3208534 + PB1 SINE Alu 21 125 -2 4 1701 233 109 22 0 chr6 146308646 146308692 -3208345 + (CACCC)n Simple_repeat Simple_repeat 5 51 0 4 1701 589 219 0 8 chr6 146311138 146311258 -3205779 + B1_Mur3 SINE Alu 5 123 -26 4 1701 742 214 252 10 chr6 146311651 146311948 -3205089 + MTD LTR MaLR 35 403 -16 4 1701 450 0 0 0 chr6 146312459 146312509 -3204528 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1701 186 143 0 0 chr6 146312897 146312932 -3204105 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1701 295 303 13 0 chr6 146312962 146313038 -3203999 - B4 SINE B4 0 292 216 4 1701 339 183 0 0 chr6 146313040 146313122 -3203915 + (TTGG)n Simple_repeat Simple_repeat 2 83 0 4 1701 464 232 234 18 chr6 146313123 146313290 -3203747 - B4 SINE B4 -68 224 22 4 1701 231 291 103 37 chr6 146313824 146313931 -3203106 + PB1D10 SINE Alu 4 117 0 4 1701 240 310 0 14 chr6 146313943 146314015 -3203022 + GA-rich Low_complexity Low_complexity 2 72 0 4 1701 323 303 0 20 chr6 146314279 146314380 -3202657 + B4A SINE B4 164 262 -30 4 1701 983 261 60 34 chr6 146314374 146314742 -3202295 + MTE2a LTR MaLR 31 419 0 4 1701 1805 241 58 3 chr6 146315191 146315663 -3201374 + Lx9 LINE L1 6085 6736 -908 4 1701 1287 124 66 205 chr6 146315663 146316088 -3200949 + ORR1D1 LTR MaLR 1 366 -8 4 1701 2688 234 77 50 chr6 146316094 146316367 -3200670 + Lx9 LINE L1 6734 7019 -625 4 1701 261 0 0 0 chr6 146316367 146316396 -3200641 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 4 1701 2688 234 77 50 chr6 146316396 146316886 -3200151 + Lx9 LINE L1 7020 7516 -128 4 1701 387 0 0 0 chr6 146316886 146316929 -3200108 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1701 2688 234 77 50 chr6 146316929 146317043 -3199994 + Lx9 LINE L1 7517 7636 -8 4 1701 23 0 0 0 chr6 146317043 146317066 -3199971 + AT_rich Low_complexity Low_complexity 1 23 0 4 1701 312 294 169 35 chr6 146317325 146317526 -3199511 + B4A SINE B4 3 230 -62 4 1701 528 269 0 0 chr6 146317615 146317851 -3199186 + (CA)n Simple_repeat Simple_repeat 1 236 0 4 1701 597 92 0 22 chr6 146318069 146318158 -3198879 - B1_Mus2 SINE Alu 0 147 61 4 1701 873 244 143 4 chr6 146318400 146318680 -3198357 - Lx8 LINE L1 0 7473 7155 4 1701 261 225 0 0 chr6 146318744 146318803 -3198234 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1701 3295 38 2 10 chr6 146318803 146319202 -3197835 - MTA_Mm LTR MaLR 0 396 1 4 1701 261 225 0 0 chr6 146319202 146319213 -3197824 + (TA)n Simple_repeat Simple_repeat 2 12 0 4 1701 307 231 40 81 chr6 146319281 146319380 -3197657 + B4 SINE B4 59 153 -139 4 1701 363 44 0 0 chr6 146319487 146319532 -3197505 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1701 220 268 18 0 chr6 146319546 146319602 -3197435 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1701 450 0 0 0 chr6 146320377 146320427 -3196610 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 1701 269 261 185 3 chr6 146320427 146320587 -3196450 + MLT1F1 LTR MaLR 177 348 -221 4 1701 425 19 19 0 chr6 146320736 146320790 -3196247 + (TTA)n Simple_repeat Simple_repeat 3 57 0 4 1701 881 159 53 0 chr6 146321436 146321587 -3195450 + B3 SINE B2 1 159 -57 4 1701 604 317 68 0 chr6 146322153 146322374 -3194663 + MTEa LTR MaLR 1 236 -143 4 1701 294 261 65 11 chr6 146322391 146322484 -3194553 + MTEa LTR MaLR 280 377 -2 4 1701 2069 133 98 0 chr6 146322487 146322863 -3194174 + MTC LTR MaLR 1 413 -8 4 1701 423 0 0 0 chr6 146323655 146323702 -3193335 + (TTG)n Simple_repeat Simple_repeat 3 49 0 4 1701 609 232 58 7 chr6 146323728 146323867 -3193170 - RSINE1 SINE B4 -18 147 2 4 1701 3593 18 0 0 chr6 146324735 146325131 -3191906 + MTA_Mm LTR MaLR 1 396 0 4 1701 9282 38 0 2 chr6 146325131 146326231 -3190806 + MTA_Mm-int LTR MaLR 1 1098 0 4 1701 3579 20 0 0 chr6 146326231 146326627 -3190410 + MTA_Mm LTR MaLR 1 396 0 4 1701 286 278 3 84 chr6 146326839 146327004 -3190033 - RSINE1 SINE B4 -79 145 2 4 1701 225 0 0 0 chr6 146328044 146328069 -3188968 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 1701 22 0 0 0 chr6 146328321 146328343 -3188694 + AT_rich Low_complexity Low_complexity 1 22 0 4 1701 360 0 0 0 chr6 146328850 146328890 -3188147 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 1701 347 182 0 49 chr6 146329118 146329199 -3187838 + B3 SINE B2 138 214 -2 4 1701 249 128 0 0 chr6 146329286 146329333 -3187704 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1701 646 208 127 44 chr6 146329425 146329442 -3187595 - B3A SINE B2 -1 197 181 4 1701 360 0 0 0 chr6 146329442 146329482 -3187555 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1701 803 174 130 1 chr6 146329482 146329645 -3187392 - B3 SINE B2 -33 183 2 4 1701 587 193 0 0 chr6 146330280 146330389 -3186648 + URR1B DNA MER1_type 7 115 -110 4 1701 562 282 57 14 chr6 146330367 146330579 -3186458 - MTEa LTR MaLR -146 233 13 4 1701 271 0 0 49 chr6 146330624 146330665 -3186372 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1701 1018 92 0 0 chr6 146330666 146330797 -3186240 - B1_Mus2 SINE Alu -12 135 5 4 1701 395 227 13 0 chr6 146330951 146331026 -3186011 - Lx8 LINE L1 -352 7121 7046 4 1701 1008 284 105 36 chr6 146332255 146332694 -3184343 + Lx9 LINE L1 6989 7457 -187 4 1701 351 0 0 0 chr6 146332694 146332733 -3184304 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1701 786 75 0 0 chr6 146332733 146332838 -3184199 + (TA)n Simple_repeat Simple_repeat 1 106 0 4 1701 861 304 139 25 chr6 146332838 146332958 -3184079 + Lx8 LINE L1 7329 7469 -4 4 1701 36 53 0 0 chr6 146333331 146333388 -3183649 + AT_rich Low_complexity Low_complexity 1 57 0 4 1701 591 270 160 60 chr6 146333819 146334087 -3182950 - MTE2b LTR MaLR -84 295 1 4 1701 400 257 97 28 chr6 146334135 146334331 -3182706 + MLT1F LTR MaLR 318 569 0 4 1701 33 56 0 0 chr6 146335076 146335130 -3181907 + AT_rich Low_complexity Low_complexity 1 54 0 4 1701 261 168 56 0 chr6 146335136 146335243 -3181794 + (TA)n Simple_repeat Simple_repeat 2 114 0 4 1701 286 183 0 194 chr6 146335434 146335563 -3181474 + MT2B LTR ERVL 148 251 -350 4 1701 677 113 14 117 chr6 146335452 146335615 -3181422 + B1_Mus2 SINE Alu 1 143 -4 4 1701 276 194 10 31 chr6 146336362 146336458 -3180579 + GA-rich Low_complexity Low_complexity 3 96 0 4 1701 191 280 98 85 chr6 146336569 146336733 -3180304 + MIRm SINE MIR 83 248 -28 4 1701 386 332 59 10 chr6 146337905 146338109 -3178928 - L1ME3B LINE L1 -351 5889 5676 4 1701 516 279 14 21 chr6 146338800 146338943 -3178094 - B3A SINE B2 0 198 57 4 1701 708 142 23 62 chr6 146339110 146339238 -3177799 - ID_B1 SINE B4 0 224 102 4 1701 534 231 68 15 chr6 146339124 146339256 -3177781 - B1F2 SINE Alu -8 141 3 4 1701 493 252 0 32 chr6 146339963 146340086 -3176951 + RSINE1 SINE B4 6 124 -41 4 1701 996 39 0 0 chr6 146340087 146340216 -3176821 + (CA)n Simple_repeat Simple_repeat 1 129 0 4 1701 254 247 102 34 chr6 146340375 146340463 -3176574 + MER5A DNA MER1_type 36 129 -60 4 1701 629 239 65 60 chr6 146340865 146341065 -3175972 - B3A SINE B2 -15 201 1 4 1701 567 271 124 14 chr6 146341075 146341292 -3175745 - MER82 DNA MER2_type -357 296 56 4 1701 1797 184 58 17 chr6 146341814 146341993 -3175044 + ORR1D1 LTR MaLR 1 181 -193 4 1701 635 67 0 11 chr6 146341993 146342083 -3174954 + (TCTCCC)n Simple_repeat Simple_repeat 5 93 0 5 1701 1797 184 58 17 chr6 146342083 146342262 -3174775 + ORR1D1 LTR MaLR 182 374 0 4 1701 21 0 0 0 chr6 146342395 146342416 -3174621 + AT_rich Low_complexity Low_complexity 1 21 0 5 1701 356 305 121 35 chr6 146343329 146343502 -3173535 + RMER15 LTR ERVL 336 523 -52 5 1701 21 36 0 0 chr6 146345206 146345234 -3171803 + AT_rich Low_complexity Low_complexity 1 28 0 5 1701 183 129 0 0 chr6 146345388 146345419 -3171618 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1701 264 282 75 31 chr6 146345911 146346136 -3170901 + L1M2 LINE L1 5354 5592 -720 5 1701 208 175 25 0 chr6 146346267 146346307 -3170730 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 5 1701 222 118 0 0 chr6 146346309 146346343 -3170694 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 5 1701 467 281 9 0 chr6 146346589 146346703 -3170334 - PB1D7 SINE Alu -5 115 1 5 1701 616 173 8 68 chr6 146346813 146346931 -3170106 + B1_Mur4 SINE Alu 30 140 -10 5 1701 440 220 4 25 chr6 146349449 146349692 -3167345 + (TG)n Simple_repeat Simple_repeat 1 237 0 5 1701 516 240 0 0 chr6 146349735 146349914 -3167123 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1701 907 234 126 23 chr6 146349954 146349978 -3167059 - B4 SINE B4 -3 289 268 5 1701 267 114 0 0 chr6 146349978 146350022 -3167015 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1701 907 234 126 23 chr6 146350022 146350259 -3166778 - B4 SINE B4 -25 267 1 5 1701 297 223 32 11 chr6 146350727 146350822 -3166215 + IAPEz-int LTR ERVK 838 934 -5547 5 1701 444 308 13 46 chr6 146352369 146352522 -3164515 + MER20 DNA MER1_type 18 165 -54 5 1701 283 237 0 0 chr6 146352588 146352647 -3164390 + MER20 DNA MER1_type 159 217 -2 5 1701 230 273 121 0 chr6 146353724 146353790 -3163247 - ID2 SINE ID -8 75 2 5 1701 237 65 0 0 chr6 146354483 146354514 -3162523 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1701 22 35 0 0 chr6 146355145 146355174 -3161863 + AT_rich Low_complexity Low_complexity 1 29 0 5 1701 294 69 52 0 chr6 146355182 146355240 -3161797 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1701 910 267 142 52 chr6 146355243 146355587 -3161450 + MTE2b LTR MaLR 1 375 -4 5 1701 929 240 106 20 chr6 146356198 146356491 -3160546 + MTEa LTR MaLR 60 377 -2 5 1701 2455 47 38 0 chr6 146356755 146357074 -3159963 + L1Md_F3 LINE L1 6254 6584 0 5 1701 1187 77 5 82 chr6 146357378 146357562 -3159475 + B2_Mm2 SINE B2 3 172 -23 5 1701 243 336 141 7 chr6 146358518 146358653 -3158384 - B3 SINE B2 -60 156 4 5 1701 315 0 0 0 chr6 146358975 146359010 -3158027 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1701 699 280 92 14 chr6 146359015 146359232 -3157805 - B4 SINE B4 -58 234 1 5 1701 329 248 223 0 chr6 146359262 146359280 -3157757 + B1F1 SINE Alu 1 82 -67 5 1701 394 209 66 0 chr6 146359280 146359371 -3157666 + ID_B1 SINE B4 115 211 -13 5 1701 329 248 223 0 chr6 146359371 146359383 -3157654 + B1F1 SINE Alu 83 148 -1 5 1701 207 262 95 48 chr6 146360431 146360515 -3156522 + L2b LINE L2 3270 3357 -18 5 1701 444 266 78 8 chr6 146361275 146361404 -3155633 + ID_B1 SINE B4 54 191 -33 5 1701 258 343 0 0 chr6 146361425 146361492 -3155545 + ID4_ SINE ID 6 72 -11 5 1701 294 87 0 0 chr6 146361492 146361538 -3155499 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1701 208 319 107 41 chr6 146361804 146361925 -3155112 - MIRb SINE MIR -32 236 108 5 1701 372 143 28 28 chr6 146362834 146362906 -3154131 - ID4_ SINE ID -11 72 1 5 1701 801 259 74 49 chr6 146362973 146363257 -3153780 + B4 SINE B4 2 292 0 5 1701 1254 299 65 3 chr6 146363341 146363696 -3153341 + MTE2b LTR MaLR 2 378 -1 5 1701 542 231 15 15 chr6 146364154 146364286 -3152751 + B1F SINE Alu 5 136 -13 5 1701 1474 219 75 24 chr6 146364656 146365055 -3151982 + MTD LTR MaLR 1 405 -14 5 1701 269 293 13 0 chr6 146365246 146365321 -3151716 + PB1D7 SINE Alu 42 117 -3 5 1701 227 217 0 16 chr6 146365340 146365401 -3151636 + G-rich Low_complexity Low_complexity 2 61 0 5 1701 225 252 0 50 chr6 146366771 146366892 -3150145 + CT-rich Low_complexity Low_complexity 4 118 0 5 1701 545 255 20 40 chr6 146370261 146370412 -3146625 + B1F1 SINE Alu 1 148 -1 5 1701 937 161 188 0 chr6 146370493 146370679 -3146358 + URR1B DNA MER1_type 5 225 0 5 1701 373 317 29 25 chr6 146371901 146372105 -3144932 - Charlie18a DNA MER1_type -63 279 75 5 1701 900 215 103 62 chr6 146372139 146372412 -3144625 + B4 SINE B4 8 291 -1 5 1701 331 260 6 6 chr6 146372462 146372640 -3144397 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1701 656 186 6 0 chr6 146372660 146372832 -3144205 + (CA)n Simple_repeat Simple_repeat 1 173 0 5 1701 207 370 42 42 chr6 146373121 146373265 -3143772 + L4 LINE RTE 1583 1726 -303 5 1701 207 0 0 0 chr6 146373545 146373568 -3143469 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1701 889 161 0 28 chr6 146374298 146374439 -3142598 - B1_Mus2 SINE Alu -9 138 2 5 1701 577 240 8 8 chr6 146375375 146375505 -3141532 - ID_B1 SINE B4 -8 216 87 5 1701 288 160 61 0 chr6 146375579 146375648 -3141389 + PB1D10 SINE Alu 28 107 -13 5 1701 504 211 8 8 chr6 146376225 146376593 -3140444 + (CA)n Simple_repeat Simple_repeat 1 368 0 5 1701 616 264 72 26 chr6 146376630 146376782 -3140255 + B3 SINE B2 4 162 -54 5 1701 798 168 0 0 chr6 146376794 146376919 -3140118 + ORR1C1 LTR MaLR 254 378 0 5 1701 243 0 0 0 chr6 146376936 146376963 -3140074 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1701 1077 101 0 0 chr6 146376963 146377101 -3139936 - B1_Mus1 SINE Alu -9 139 2 5 1701 32 0 0 0 chr6 146377101 146377133 -3139904 + AT_rich Low_complexity Low_complexity 1 32 0 5 1701 207 103 77 0 chr6 146377174 146377213 -3139824 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 1701 591 226 0 0 chr6 146377221 146377327 -3139710 - RSINE1 SINE B4 -36 129 24 5 1701 715 241 6 37 chr6 146377380 146377544 -3139493 + B3A SINE B2 11 169 -29 5 1701 780 101 0 0 chr6 146377548 146377686 -3139351 + (TC)n Simple_repeat Simple_repeat 1 138 0 5 1701 237 33 0 0 chr6 146377686 146377715 -3139322 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1701 3709 227 125 13 chr6 146378136 146378179 -3138858 + RMER1B Other Other 33 75 -991 5 1701 936 0 0 0 chr6 146378179 146378283 -3138754 + (GA)n Simple_repeat Simple_repeat 1 104 0 5 1701 4064 172 86 9 chr6 146378283 146379062 -3137975 + RMER1A Other Other 76 946 -120 5 1701 378 0 0 0 chr6 146379062 146379104 -3137933 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1701 4064 152 72 7 chr6 146379104 146379208 -3137829 + RMER1A Other Other 887 1027 -3 5 1701 309 325 85 12 chr6 146380772 146380937 -3136100 + MIRc SINE MIR 90 266 -2 5 1701 626 196 0 35 chr6 146381295 146381411 -3135626 + PB1D7 SINE Alu 9 120 0 5 1701 180 0 0 0 chr6 146382546 146382566 -3134471 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 1701 195 162 0 0 chr6 146383913 146383950 -3133087 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1701 315 0 0 0 chr6 146384467 146384502 -3132535 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1701 357 24 0 0 chr6 146384502 146384543 -3132494 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1701 1172 63 0 0 chr6 146384577 146384719 -3132318 + B1_Mus2 SINE Alu 1 142 -5 5 1701 383 92 0 15 chr6 146384719 146384732 -3132305 + (GAAA)n Simple_repeat Simple_repeat 4 16 0 5 1701 1032 156 0 0 chr6 146384732 146384912 -3132125 + GA-rich Low_complexity Low_complexity 1 180 0 5 1701 468 46 0 8 chr6 146384912 146385015 -3132022 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 5 1701 299 234 0 7 chr6 146388299 146388445 -3128592 + GA-rich Low_complexity Low_complexity 5 149 0 5 1701 293 218 11 17 chr6 146388469 146388646 -3128391 + GA-rich Low_complexity Low_complexity 5 180 0 5 1701 737 219 25 74 chr6 146389188 146389390 -3127647 + B3A SINE B2 6 197 -1 5 1701 593 282 25 25 chr6 146389418 146389578 -3127459 + RSINE1 SINE B4 1 160 -5 5 1701 501 297 103 29 chr6 146389664 146390026 -3127011 + L1ME1 LINE L1 5493 5894 -285 5 1701 1059 200 153 14 chr6 146390478 146390835 -3126202 - MTE2a LTR MaLR -2 377 11 5 1701 36 40 0 0 chr6 146390843 146390893 -3126144 + AT_rich Low_complexity Low_complexity 1 50 0 5 1701 458 194 20 39 chr6 146390944 146391046 -3125991 - RSINE1 SINE B4 -61 104 5 5 1701 242 296 24 22 chr6 146391053 146391214 -3125823 + L1MA4A LINE L1 5844 5996 -1477 5 1701 328 224 6 46 chr6 146391222 146391395 -3125642 + GA-rich Low_complexity Low_complexity 5 170 0 5 1701 356 304 29 0 chr6 146391617 146391719 -3125318 + PB1D10 SINE Alu 5 109 -8 5 1701 845 242 71 46 chr6 146392483 146392764 -3124273 - B4A SINE B4 -2 290 3 5 1701 351 0 0 0 chr6 146392816 146392855 -3124182 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1701 246 260 0 0 chr6 146392898 146392948 -3124089 - B4 SINE B4 -152 140 91 5 1701 372 206 100 30 chr6 146393173 146393185 -3123852 + MT2B LTR ERVL 151 169 -432 5 1701 551 184 136 0 chr6 146393185 146393288 -3123749 + B1_Mus2 SINE Alu 1 117 -30 5 1701 187 212 0 0 chr6 146393313 146393346 -3123691 - L2b LINE L2 -15 3360 3328 5 1701 452 262 98 0 chr6 146393768 146393890 -3123147 + B1F SINE Alu 10 143 -6 5 1701 378 259 0 0 chr6 146393895 146394065 -3122972 + GA-rich Low_complexity Low_complexity 1 170 0 5 1701 229 288 8 48 chr6 146394492 146394616 -3122421 + (CA)n Simple_repeat Simple_repeat 2 120 0 5 1701 318 67 0 0 chr6 146394653 146394698 -3122339 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1701 294 29 0 0 chr6 146395274 146395309 -3121728 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1701 257 294 0 29 chr6 146395646 146395716 -3121321 + polypyrimidine Low_complexity Low_complexity 3 70 0 5 1701 818 0 10 0 chr6 146395815 146395911 -3121126 + RLTR10B LTR ERVK 196 292 0 5 1701 1510 50 0 0 chr6 146395911 146396091 -3120946 + MMERVK10C-int LTR ERVK 1 180 -7401 5 1701 226 200 0 0 chr6 146396091 146396131 -3120906 + RLTR27 LTR ERVK 231 270 -39 5 1701 379 45 0 0 chr6 146396132 146396176 -3120861 + MMERVK10C-int LTR ERVK 224 267 -7314 5 1701 254 165 22 56 chr6 146396258 146396348 -3120689 + GA-rich Low_complexity Low_complexity 3 89 0 5 1701 324 68 23 0 chr6 146396348 146396392 -3120645 + MMERVK10C-int LTR ERVK 93 137 -6405 5 1701 1974 43 0 2 chr6 146396395 146396830 -3120207 + MMERVK10C-int LTR ERVK 652 887 -1100 5 1701 8946 33 1 0 chr6 146396823 146397843 -3119194 + MMERVK10C-int LTR ERVK 4790 5810 -1771 5 1701 8330 29 0 0 chr6 146397834 146398765 -3118272 + MMERVK10C-int LTR ERVK 6651 7581 0 5 1701 3124 44 13 0 chr6 146398765 146399151 -3117886 + RLTR10C LTR ERVK 1 391 -45 5 1701 234 0 0 0 chr6 146399853 146399879 -3117158 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1701 362 200 0 107 chr6 146400487 146400599 -3116438 + RMER12 LTR ERVK 770 869 -453 6 1701 784 276 64 32 chr6 146400639 146400920 -3116117 - B4 SINE B4 -2 290 1 6 1701 273 259 48 36 chr6 146401218 146401245 -3115792 - ID_B1 SINE B4 -125 99 15 6 1701 329 211 0 0 chr6 146401245 146401302 -3115735 - ID4 SINE ID -12 71 15 6 1701 374 244 101 0 chr6 146401543 146401648 -3115389 + B1F SINE Alu 4 117 0 6 1701 521 200 0 10 chr6 146401767 146401863 -3115174 + RSINE1 SINE B4 3 97 -68 6 1701 958 155 162 25 chr6 146402219 146402417 -3114620 + URR1B DNA MER1_type 1 225 0 6 1701 1214 138 113 5 chr6 146403099 146403303 -3113734 + URR1A DNA MER1_type 1 226 0 6 1701 281 380 0 0 chr6 146403376 146403484 -3113553 - MIRb SINE MIR -38 230 123 6 1701 1276 148 13 30 chr6 146403930 146404160 -3112877 - URR1A DNA MER1_type 0 226 1 6 1701 394 244 113 8 chr6 146404271 146404395 -3112642 + RMER15 LTR ERVL 417 553 -22 6 1701 523 282 117 21 chr6 146404909 146405054 -3111983 + RSINE1 SINE B4 3 161 -4 6 1701 258 279 155 60 chr6 146405054 146405077 -3111960 + B2_Mm2 SINE B2 2 185 -10 6 1701 689 243 14 0 chr6 146405125 146405265 -3111772 + B1_Mur1 SINE Alu 2 143 -6 6 1701 368 203 0 0 chr6 146405892 146405956 -3111081 + B1_Mur2 SINE Alu 34 97 -52 6 1701 180 234 0 0 chr6 146405966 146406013 -3111024 + GA-rich Low_complexity Low_complexity 2 48 0 6 1702 384 348 21 54 chr6 146407587 146407658 -3109379 + LTR48 LTR ERV1 76 138 -506 6 1702 563 40 14 0 chr6 146407658 146407732 -3109305 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 1702 384 348 21 54 chr6 146407732 146407900 -3109137 + LTR48 LTR ERV1 139 306 -338 6 1702 553 218 134 0 chr6 146407872 146408014 -3109023 + LTR48 LTR ERV1 471 631 -156 6 1702 393 316 58 32 chr6 146408022 146408176 -3108861 - Charlie1 DNA MER1_type -2615 166 9 6 1702 689 251 36 128 chr6 146408587 146408806 -3108231 + B4A SINE B4 1 199 -93 6 1702 582 186 6 125 chr6 146408805 146408965 -3108072 + RSINE1 SINE B4 25 165 0 6 1702 211 267 0 13 chr6 146409018 146409094 -3107943 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 1702 2399 291 46 50 chr6 146410140 146411040 -3105997 + Lx9 LINE L1 6459 7342 -302 6 1702 219 103 0 0 chr6 146411040 146411079 -3105958 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 6 1702 2399 291 46 50 chr6 146411079 146411131 -3105906 + Lx9 LINE L1 7343 7407 -237 6 1702 1577 42 5 0 chr6 146411291 146411482 -3105555 - MTA_Mm LTR MaLR 0 396 205 6 1702 864 0 0 0 chr6 146411556 146411652 -3105385 + (TTC)n Simple_repeat Simple_repeat 1 96 0 6 1702 261 0 0 0 chr6 146411683 146411712 -3105325 + (CTG)n Simple_repeat Simple_repeat 1 29 0 6 1702 2240 33 33 0 chr6 146412208 146412484 -3104553 - MT2C_Mm LTR ERVL -190 285 1 6 1702 266 243 33 83 chr6 146412484 146412513 -3104524 - ORR1A3-int LTR MaLR -1350 613 591 6 1702 543 232 128 0 chr6 146412611 146412736 -3104301 + B3A SINE B2 1 141 -57 6 1702 645 221 9 0 chr6 146412738 146412851 -3104186 - B3 SINE B2 -102 114 1 6 1702 401 195 24 35 chr6 146413220 146413305 -3103732 + RMER15 LTR ERVL 352 435 -140 6 1702 2138 92 3 112 chr6 146413306 146413662 -3103375 + ORR1A2 LTR MaLR 3 319 -8 6 1702 742 206 14 14 chr6 146413666 146413814 -3103223 + RMER15 LTR ERVL 428 575 0 6 1702 22 0 0 0 chr6 146413873 146413895 -3103142 + AT_rich Low_complexity Low_complexity 1 22 0 6 1702 189 308 54 11 chr6 146413897 146413989 -3103048 + MIR SINE MIR 163 258 -4 6 1702 204 352 53 53 chr6 146414373 146414505 -3102532 + L2c LINE L2 3196 3327 -60 6 1702 22 0 0 0 chr6 146414672 146414694 -3102343 + AT_rich Low_complexity Low_complexity 1 22 0 6 1702 869 189 24 33 chr6 146414704 146414917 -3102120 + B3 SINE B2 1 211 -5 6 1702 623 222 94 16 chr6 146414932 146415097 -3101940 - B3A SINE B2 -14 181 8 6 1702 261 0 0 0 chr6 146415254 146415283 -3101754 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1702 313 300 0 24 chr6 146415300 146415382 -3101655 - RSINE1 SINE B4 0 165 86 6 1702 870 166 133 37 chr6 146415598 146415786 -3101251 - B3 SINE B2 0 216 11 6 1702 2489 172 44 73 chr6 146415812 146416332 -3100705 + RMER19C LTR ERVK 107 611 0 6 1702 515 264 78 7 chr6 146417312 146417453 -3099584 + ID_B1 SINE B4 72 222 -2 6 1702 801 297 93 4 chr6 146418051 146418298 -3098739 + B4A SINE B4 1 269 -23 6 1702 342 115 0 0 chr6 146418300 146418352 -3098685 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1702 24 0 0 0 chr6 146418786 146418810 -3098227 + AT_rich Low_complexity Low_complexity 1 24 0 6 1702 249 310 84 30 chr6 146419025 146419228 -3097809 + L1MD3 LINE L1 7479 7692 -303 6 1702 424 324 65 84 chr6 146419404 146419775 -3097262 + MTEa LTR MaLR 16 379 0 6 1702 5427 144 20 20 chr6 146419888 146420787 -3096250 + Lx4B LINE L1 6153 7051 -7 6 1702 509 247 4 26 chr6 146420811 146420935 -3096102 + ID_B1 SINE B4 78 192 -32 6 1702 427 250 8 114 chr6 146420819 146420950 -3096087 + PB1D10 SINE Alu 1 117 0 6 1702 483 264 89 92 chr6 146423031 146423204 -3093833 + Lx7 LINE L1 5053 5236 -644 6 1702 841 161 35 7 chr6 146423204 146423348 -3093689 + B1_Mur3 SINE Alu 2 149 0 6 1702 483 264 89 92 chr6 146423348 146423373 -3093664 + Lx7 LINE L1 5237 5254 -626 6 1702 2441 144 63 5 chr6 146423373 146423771 -3093266 + MTC LTR MaLR 1 421 0 6 1702 483 264 89 92 chr6 146423771 146423963 -3093074 + Lx7 LINE L1 5255 5443 -437 6 1702 271 247 22 110 chr6 146424058 146424149 -3092888 + B3 SINE B2 127 209 -7 6 1702 376 298 10 9 chr6 146424188 146424325 -3092712 + Lx7 LINE L1 5700 5870 -286 6 1702 554 173 36 0 chr6 146424325 146424435 -3092602 + Lx LINE L1 6536 6649 -5 6 1702 261 325 30 18 chr6 146424435 146424466 -3092571 + Lx7 LINE L1 5871 5904 -252 6 1702 703 224 124 5 chr6 146424480 146424673 -3092364 + MTD LTR MaLR 193 408 -11 6 1702 237 301 36 0 chr6 146424684 146424767 -3092270 + Lx8 LINE L1 5838 5923 -1550 6 1702 894 281 72 27 chr6 146425602 146425935 -3091102 + Lx8 LINE L1 7123 7470 -3 6 1702 217 234 0 0 chr6 146425951 146425998 -3091039 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 6 1702 550 302 15 45 chr6 146425998 146426196 -3090841 + B3A SINE B2 1 192 -6 6 1702 410 270 151 0 chr6 146426238 146426364 -3090673 + B1_Mur2 SINE Alu 1 145 -4 6 1702 342 114 28 14 chr6 146426388 146426459 -3090578 + GA-rich Low_complexity Low_complexity 4 75 0 6 1702 222 37 0 0 chr6 146426459 146426486 -3090551 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1702 2326 105 43 43 chr6 146426539 146426937 -3090100 - RMER10B LTR ERVL 0 398 1 6 1702 186 43 0 0 chr6 146427295 146427318 -3089719 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 6 1702 931 130 20 14 chr6 146427318 146427458 -3089579 - B1_Mur4 SINE Alu -7 143 1 6 1702 239 235 81 154 chr6 146427658 146427794 -3089243 + MER121 Unknown Unknown 259 384 -28 6 1702 1088 214 13 17 chr6 146428296 146428512 -3088525 + B3 SINE B2 1 195 0 6 1702 2470 146 42 7 chr6 146428738 146429145 -3087892 - MTC LTR MaLR 0 421 1 6 1702 324 293 91 70 chr6 146430507 146430650 -3086387 + ID_B1 SINE B4 79 224 0 6 1702 195 368 0 13 chr6 146430696 146430773 -3086264 - L2a LINE L2 -14 3412 3337 6 1702 243 61 0 0 chr6 146431212 146431245 -3085792 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 6 1702 400 232 232 0 chr6 146431438 146431550 -3085487 - ID_B1 SINE B4 -10 214 77 6 1702 2649 134 29 2 chr6 146432132 146432542 -3084495 - MTC LTR MaLR 0 421 1 6 1702 537 207 137 95 chr6 146432742 146433004 -3084033 - B4A SINE B4 -18 274 2 6 1702 458 273 119 42 chr6 146433020 146433330 -3083707 - Lx9 LINE L1 0 7644 7311 6 1702 713 256 42 40 chr6 146434030 146434230 -3082807 - B3A SINE B2 -7 188 2 6 1702 761 211 132 0 chr6 146434319 146434509 -3082528 - B3 SINE B2 -1 215 1 6 1702 27 0 0 0 chr6 146434666 146434693 -3082344 + AT_rich Low_complexity Low_complexity 1 27 0 6 1702 319 269 108 132 chr6 146436264 146436431 -3080606 - ID_B1 SINE B4 -24 200 38 6 1702 335 281 76 32 chr6 146436953 146437111 -3079926 + RSINE1 SINE B4 1 165 0 6 1702 417 20 0 0 chr6 146437112 146437162 -3079875 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1702 323 270 108 23 chr6 146437770 146437899 -3079138 - MIRb SINE MIR -117 151 5 6 1702 271 388 65 19 chr6 146437907 146438062 -3078975 - L2b LINE L2 -3 3372 3211 6 1702 1114 256 4 39 chr6 146438074 146438355 -3078682 + B4A SINE B4 20 290 -2 6 1702 246 323 0 0 chr6 146439488 146439550 -3077487 + ID2 SINE ID 2 63 -20 6 1702 237 344 44 38 chr6 146439550 146439648 -3077389 + RSINE1 SINE B4 3 163 -2 6 1702 226 299 11 22 chr6 146439724 146439813 -3077224 - BC1_Mm scRNA scRNA -50 102 15 6 1702 919 176 0 0 chr6 146440568 146440716 -3076321 - B1_Mur2 SINE Alu 0 149 2 6 1702 322 172 62 0 chr6 146441626 146441690 -3075347 + L1MB4 LINE L1 5894 5961 -219 6 1702 716 254 224 15 chr6 146442041 146442379 -3074658 - MTD LTR MaLR 0 379 1 6 1702 985 80 0 0 chr6 146442880 146443005 -3074032 + B1_Mus1 SINE Alu 24 148 0 6 1702 469 246 103 32 chr6 146443612 146443738 -3073299 + B1F1 SINE Alu 4 138 -11 6 1702 1315 78 33 11 chr6 146444873 146445055 -3071982 - B2_Mm2 SINE B2 -6 189 4 6 1702 242 185 31 0 chr6 146445761 146445826 -3071211 + A-rich Low_complexity Low_complexity 4 70 0 6 1702 845 185 0 7 chr6 146445962 146446109 -3070928 + B1_Mus2 SINE Alu 1 146 -1 6 1702 222 37 0 0 chr6 146446336 146446363 -3070674 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 1702 749 194 25 12 chr6 146447223 146447385 -3069652 + B3 SINE B2 53 216 0 6 1702 734 261 76 19 chr6 146447862 146448132 -3068905 - MTD LTR MaLR 0 419 116 7 1702 360 345 41 0 chr6 146448976 146449170 -3067867 - MIR SINE MIR -49 213 12 7 1702 204 231 12 49 chr6 146450730 146450812 -3066225 + (CGGGG)n Simple_repeat Simple_repeat 5 83 0 7 1702 1360 176 33 23 chr6 146452480 146452782 -3064255 - RLTR20B1 LTR ERVK -258 305 1 7 1702 1275 235 109 17 chr6 146452822 146453169 -3063868 - MTEa LTR MaLR 0 379 1 7 1702 661 155 0 13 chr6 146453356 146453506 -3063531 + (CA)n Simple_repeat Simple_repeat 1 148 0 7 1702 299 274 85 65 chr6 146453604 146453894 -3063143 - L1MC4a LINE L1 -140 7855 7434 7 1702 577 225 0 27 chr6 146454279 146454462 -3062575 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 7 1702 303 305 0 0 chr6 146454457 146454588 -3062449 + (CA)n Simple_repeat Simple_repeat 2 132 0 7 1702 1198 167 65 10 chr6 146454764 146454964 -3062073 - B3 SINE B2 -5 211 1 7 1702 261 217 33 0 chr6 146455032 146455092 -3061945 + PB1D7 SINE Alu 51 112 -8 7 1702 22 0 0 0 chr6 146455598 146455620 -3061417 + AT_rich Low_complexity Low_complexity 1 22 0 7 1702 1555 125 4 4 chr6 146455648 146455897 -3061140 - Lx LINE L1 -9 6645 6397 7 1702 772 195 160 11 chr6 146455905 146456092 -3060945 + L1_Mur3 LINE L1 5349 5563 -317 7 1702 259 304 106 21 chr6 146456102 146456136 -3060901 + RSINE1 SINE B4 2 40 -125 7 1702 738 43 0 0 chr6 146456136 146456230 -3060807 + (CA)n Simple_repeat Simple_repeat 2 95 0 7 1702 259 304 106 21 chr6 146456230 146456336 -3060701 + RSINE1 SINE B4 41 153 -12 7 1702 26 0 0 0 chr6 146456343 146456369 -3060668 + AT_rich Low_complexity Low_complexity 1 26 0 7 1702 567 278 99 46 chr6 146456370 146456570 -3060467 + L1MA8 LINE L1 5604 5809 -482 7 1702 1961 88 150 6 chr6 146456570 146456890 -3060147 - Lx2 LINE L1 0 6997 6632 7 1702 567 278 99 46 chr6 146456890 146456991 -3060046 + L1MA8 LINE L1 5810 5921 -370 7 1702 594 275 71 42 chr6 146457093 146457332 -3059705 - B4A SINE B4 -42 250 5 7 1702 484 189 16 8 chr6 146457352 146457430 -3059607 + (TATG)n Simple_repeat Simple_repeat 1 80 0 7 1702 1078 100 0 11 chr6 146457430 146457612 -3059425 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1702 484 189 16 8 chr6 146457612 146457661 -3059376 + (TATG)n Simple_repeat Simple_repeat 4 52 0 7 1702 260 27 27 0 chr6 146458197 146458234 -3058803 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 7 1702 3213 188 243 56 chr6 146458348 146459244 -3057793 + RMER1B Other Other 2 1065 -1 7 1702 250 219 131 54 chr6 146459289 146459419 -3057618 + MIRb SINE MIR 98 237 -31 7 1702 191 32 65 0 chr6 146459827 146459858 -3057179 + (CACG)n Simple_repeat Simple_repeat 2 34 0 7 1702 740 277 12 0 chr6 146460537 146460703 -3056334 + B3A SINE B2 2 169 -29 7 1702 549 0 0 0 chr6 146460703 146460764 -3056273 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1702 653 240 20 0 chr6 146460829 146460975 -3056062 + B1F2 SINE Alu 1 149 0 7 1702 334 295 13 0 chr6 146461035 146461113 -3055924 + PB1D10 SINE Alu 1 79 -38 7 1702 737 206 74 18 chr6 146461297 146461460 -3055577 + ID_B1 SINE B4 19 190 -34 7 1702 5076 141 20 22 chr6 146461462 146462361 -3054676 + RMER19B LTR ERVK 1 897 -5 7 1702 401 291 210 26 chr6 146463345 146463617 -3053420 - MTEa LTR MaLR -57 322 1 7 1702 720 161 69 14 chr6 146463662 146463807 -3053230 + RSINE1 SINE B4 2 154 -11 7 1702 548 299 147 19 chr6 146464327 146464641 -3052396 + ORR1E LTR MaLR 1 354 -5 7 1702 207 227 0 0 chr6 146464855 146464899 -3052138 - L2a LINE L2 -6 3420 3377 7 1702 302 227 43 43 chr6 146465313 146465405 -3051632 - MLT1A1 LTR MaLR -14 394 303 7 1702 324 62 0 0 chr6 146465994 146466042 -3050995 - B1_Mus2 SINE Alu 0 147 100 7 1702 424 230 42 42 chr6 146466079 146466197 -3050840 + ID_B1 SINE B4 107 224 0 7 1702 339 171 114 0 chr6 146466512 146466582 -3050455 - B3A SINE B2 -119 79 2 7 1702 230 325 11 11 chr6 146467775 146467862 -3049175 + MER44D DNA MER2_type 2 88 -617 7 1702 561 230 107 30 chr6 146467856 146468053 -3048984 + MER44D DNA MER2_type 492 703 -2 7 1702 219 329 35 23 chr6 146468391 146468478 -3048559 - RSINE1 SINE B4 0 165 78 7 1702 994 250 136 14 chr6 146468486 146468847 -3048190 - MTD LTR MaLR -14 405 1 7 1702 370 293 0 0 chr6 146468847 146468929 -3048108 - RSINE1 SINE B4 -80 85 4 7 1702 292 267 19 29 chr6 146469245 146469349 -3047688 + MLT1A1 LTR MaLR 304 406 -2 7 1702 798 133 7 0 chr6 146469559 146469694 -3047343 - URR1A DNA MER1_type -1 225 90 7 1702 368 262 152 35 chr6 146469694 146469747 -3047290 + CYRA11_Mm Unknown Y-chromosome 195 383 -234 7 1702 1933 217 101 22 chr6 146469758 146470262 -3046775 + RMER15 LTR ERVL 22 565 -10 7 1702 400 204 174 0 chr6 146470269 146470367 -3046670 - B3A SINE B2 -101 115 1 7 1702 565 161 246 0 chr6 146470806 146470936 -3046101 + URR1B DNA MER1_type 1 162 -63 7 1702 225 264 65 21 chr6 146470964 146471045 -3045992 - RLTR28B LTR ERVL -13 511 427 7 1702 3335 41 134 0 chr6 146471045 146471464 -3045573 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1702 225 264 65 21 chr6 146471464 146471475 -3045562 - RLTR28B LTR ERVL -98 426 416 7 1702 277 242 234 8 chr6 146471495 146471641 -3045396 - RLTR28B LTR ERVL -230 294 119 7 1702 1790 129 39 23 chr6 146471747 146472055 -3044982 - RLTR41 LTR ERV1 0 446 134 7 1702 386 131 0 0 chr6 146472172 146472233 -3044804 + URR1B DNA MER1_type 165 225 0 7 1702 4095 206 92 31 chr6 146472610 146472974 -3044063 - RMER12 LTR ERVK -137 1185 759 7 1702 1128 91 17 0 chr6 146472974 146473150 -3043887 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 7 1702 4095 206 92 31 chr6 146473150 146473902 -3043135 - RMER12 LTR ERVK -564 758 1 7 1702 774 252 99 61 chr6 146473907 146474169 -3042868 + MTE2a LTR MaLR 107 378 -1 7 1702 417 209 5 232 chr6 146474336 146474408 -3042629 + B1F2 SINE Alu 1 64 -85 7 1702 452 273 80 7 chr6 146474408 146474559 -3042478 + RSINE1 SINE B4 4 165 0 7 1702 417 207 5 263 chr6 146474559 146474687 -3042350 + B1F2 SINE Alu 59 149 0 7 1702 316 317 112 0 chr6 146474688 146474849 -3042188 + MER5A DNA MER1_type 11 189 0 7 1702 892 169 0 27 chr6 146474901 146475047 -3041990 - B1_Mur2 SINE Alu -5 144 3 7 1702 2159 166 90 13 chr6 146475243 146475338 -3041699 - RLTR16 LTR ERVK 0 505 413 7 1702 405 0 0 0 chr6 146475338 146475383 -3041654 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1702 2159 166 90 13 chr6 146475383 146475756 -3041281 - RLTR16 LTR ERVK -93 412 3 7 1702 224 292 125 0 chr6 146476449 146476545 -3040492 + L2 LINE L2 1902 2009 -1410 7 1702 1701 127 57 79 chr6 146477154 146477573 -3039464 - RMER17C LTR ERVK 0 410 1 7 1702 704 278 51 5 chr6 146477846 146478041 -3038996 + B3 SINE B2 2 205 -11 7 1702 1013 269 117 9 chr6 146478308 146478650 -3038387 - MTEa LTR MaLR 0 379 1 7 1702 222 250 62 0 chr6 146478826 146478890 -3038147 + B1F1 SINE Alu 41 108 -41 7 1702 588 62 0 0 chr6 146479800 146479881 -3037156 + (TTAGGG)n Simple_repeat Simple_repeat 1 81 0 7 1702 464 316 134 0 chr6 146480154 146480385 -3036652 + MLT1D LTR MaLR 6 267 -238 7 1702 180 0 0 0 chr6 146480603 146480623 -3036414 + (GGGAA)n Simple_repeat Simple_repeat 4 23 0 7 1702 241 218 55 0 chr6 146480659 146480714 -3036323 + PB1D10 SINE Alu 53 110 -7 7 1702 1257 136 5 0 chr6 146480721 146480920 -3036117 + B3 SINE B2 6 205 -11 7 1702 643 71 92 0 chr6 146481229 146481327 -3035710 - B2_Mm2 SINE B2 -88 107 1 7 1702 387 245 194 0 chr6 146481591 146481689 -3035348 - PB1D7 SINE Alu -3 117 1 7 1702 248 239 45 0 chr6 146481806 146481873 -3035164 - B4A SINE B4 -221 71 2 7 1702 1152 202 45 162 chr6 146482140 146482583 -3034454 + RMER10A LTR ERVL 1 391 -51 7 1702 582 239 157 20 chr6 146483265 146483509 -3033528 + L1MA6 LINE L1 5588 5866 -290 7 1702 1360 160 4 4 chr6 146483723 146483949 -3033088 - URR1A DNA MER1_type 0 226 1 7 1702 253 274 53 62 chr6 146483956 146484069 -3032968 + PB1 SINE Alu 14 125 -2 7 1702 244 346 13 0 chr6 146484077 146484155 -3032882 + ID4 SINE ID 2 80 -3 7 1702 3712 28 21 0 chr6 146484469 146484896 -3032141 - RLTR10C LTR ERVK 0 436 1 7 1702 263 276 132 16 chr6 146485008 146485137 -3031900 + ID_B1 SINE B4 69 212 -12 7 1702 847 232 69 20 chr6 146485341 146485543 -3031494 + B3 SINE B2 5 216 0 7 1702 350 231 36 157 chr6 146485577 146485717 -3031320 - RSINE1 SINE B4 0 292 58 7 1702 375 315 8 30 chr6 146486189 146486320 -3030717 + B1F1 SINE Alu 22 149 0 7 1702 480 139 0 0 chr6 146486414 146486493 -3030544 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 7 1702 216 0 0 0 chr6 146486647 146486671 -3030366 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1702 582 15 0 0 chr6 146486671 146486737 -3030300 + (GA)n Simple_repeat Simple_repeat 1 67 0 7 1702 264 160 129 10 chr6 146487551 146487641 -3029396 - B1_Mur1 SINE Alu 0 149 54 7 1702 1746 11 0 0 chr6 146487704 146487893 -3029144 + B2_Mm1t SINE B2 2 190 -3 7 1702 571 141 174 0 chr6 146487908 146488029 -3029008 + B1_Mus1 SINE Alu 6 147 -1 7 1702 206 156 22 0 chr6 146488125 146488170 -3028867 + GA-rich Low_complexity Low_complexity 1 46 0 7 1702 906 99 0 0 chr6 146488171 146488302 -3028735 + (GGAA)n Simple_repeat Simple_repeat 2 132 0 7 1702 445 219 52 0 chr6 146488323 146488415 -3028622 - RMER30 DNA MER1_type -1 201 105 7 1702 442 183 122 0 chr6 146488415 146488497 -3028540 + B1_Mur4 SINE Alu 1 92 -58 7 1702 932 78 0 38 chr6 146488497 146488657 -3028380 + (GGGAGA)n Simple_repeat Simple_repeat 3 156 0 7 1702 770 167 16 0 chr6 146488660 146488786 -3028251 + B3 SINE B2 3 130 -86 7 1702 271 133 0 2 chr6 146488969 146489022 -3028015 - B1_Mur2 SINE Alu -6 143 60 7 1702 229 182 58 43 chr6 146489022 146489034 -3028003 - ID_B1 SINE B4 -2 218 153 7 1702 566 259 77 18 chr6 146489053 146489222 -3027815 - B4A SINE B4 -68 224 46 7 1702 467 223 26 26 chr6 146489707 146489822 -3027215 - PB1D10 SINE Alu -1 116 2 7 1702 362 226 42 31 chr6 146490037 146490133 -3026904 + PB1D7 SINE Alu 24 120 0 8 1702 213 274 71 0 chr6 146490619 146490703 -3026334 - MIRb SINE MIR -68 200 111 8 1702 871 153 20 20 chr6 146491030 146491177 -3025860 - B1_Mur2 SINE Alu 0 149 3 8 1702 1592 190 202 7 chr6 146492818 146493149 -3023888 + Lx9 LINE L1 7115 7478 -166 8 1702 189 0 0 0 chr6 146493149 146493170 -3023867 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1702 1592 190 202 7 chr6 146493170 146493278 -3023759 + Lx9 LINE L1 7479 7640 -4 8 1702 933 178 39 0 chr6 146493278 146493458 -3023579 - B2_Mm2 SINE B2 -8 187 1 8 1702 1289 252 122 39 chr6 146493823 146494095 -3022942 + Lx8 LINE L1 6813 7122 -351 8 1702 477 0 0 0 chr6 146494095 146494148 -3022889 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1702 1289 252 122 39 chr6 146494148 146494342 -3022695 + Lx8 LINE L1 7123 7318 -155 8 1702 995 179 97 5 chr6 146494422 146494618 -3022419 + B3 SINE B2 3 216 0 8 1702 1327 87 17 0 chr6 146494641 146494813 -3022224 + B2_Mm2 SINE B2 2 176 -19 8 1702 622 157 66 1 chr6 146495329 146495473 -3021564 - MTD LTR MaLR -1 418 256 8 1702 698 159 48 96 chr6 146495966 146496154 -3020883 + MTEa LTR MaLR 1 179 -200 8 1702 619 197 38 8 chr6 146496371 146496503 -3020534 + B3 SINE B2 55 191 -25 8 1702 56 16 0 0 chr6 146496510 146496573 -3020464 + AT_rich Low_complexity Low_complexity 1 63 0 8 1702 590 125 142 0 chr6 146496753 146496873 -3020164 - B1_Mur3 SINE Alu -2 147 11 8 1702 1131 30 30 0 chr6 146497161 146497295 -3019742 + B1_Mus1 SINE Alu 2 139 -9 8 1702 552 188 78 35 chr6 146501461 146501577 -3015460 - B1_Mur1 SINE Alu -5 144 24 1 1702 564 232 9 0 chr6 146501949 146502061 -3014976 - RSINE1 SINE B4 -18 147 35 2 1702 289 119 33 17 chr6 146503178 146503238 -3013799 + GA-rich Low_complexity Low_complexity 3 63 0 3 1702 29 0 0 0 chr6 146504061 146504090 -3012947 + AT_rich Low_complexity Low_complexity 1 29 0 4 1702 1257 158 0 28 chr6 146504417 146504632 -3012405 + B3 SINE B2 2 210 -6 5 1702 1709 16 0 0 chr6 146505358 146505550 -3011487 - B2_Mm1a SINE B2 0 193 2 6 1702 597 133 0 0 chr6 146506719 146506817 -3010220 + (TA)n Simple_repeat Simple_repeat 2 99 0 7 1702 242 412 58 12 chr6 146506823 146506995 -3010042 - L2b LINE L2 -178 3197 3018 8 1702 221 262 0 32 chr6 146507559 146507622 -3009415 - B4A SINE B4 -227 65 5 9 1702 1671 219 74 8 chr6 146508181 146508558 -3008479 - MTD LTR MaLR 0 419 18 1 1702 504 239 25 17 chr6 146509474 146509593 -3007444 + PB1D7 SINE Alu 1 120 0 1 1702 181 191 48 0 chr6 146509683 146509725 -3007312 - MIRb SINE MIR -20 248 205 1 1702 2734 69 59 0 chr6 146511031 146511406 -3005631 + MTB LTR MaLR 1 397 -3 1 1702 31 0 0 0 chr6 146511415 146511446 -3005591 + AT_rich Low_complexity Low_complexity 1 31 0 1 1702 337 245 170 0 chr6 146512675 146512769 -3004268 - RSINE1 SINE B4 -19 146 37 1 1702 516 336 241 41 chr6 146513116 146513730 -3003307 + MER21B LTR ERV1 20 756 -107 1 1702 23 33 0 0 chr6 146514235 146514265 -3002772 + AT_rich Low_complexity Low_complexity 1 30 0 1 1702 838 222 34 0 chr6 146514346 146514522 -3002515 + B3A SINE B2 1 182 -16 1 1702 23 54 0 0 chr6 146514527 146514564 -3002473 + AT_rich Low_complexity Low_complexity 1 37 0 1 1702 678 211 24 0 chr6 146514687 146514810 -3002227 - B1F1 SINE Alu -5 144 19 2 1702 416 264 80 92 chr6 146515425 146515588 -3001449 + RSINE1 SINE B4 1 161 -4 2 1702 750 172 7 43 chr6 146515608 146515748 -3001289 + B1_Mus1 SINE Alu 3 137 -11 2 1702 304 190 113 90 chr6 146515775 146515908 -3001129 + L1MB8 LINE L1 5842 5977 -201 2 1702 257 188 29 0 chr6 146516017 146516086 -3000951 + L1MB8 LINE L1 6114 6184 0 2 1702 320 288 27 0 chr6 146516086 146516159 -3000878 + AluG_3 SINE Alu 144 218 -93 2 1702 33 56 0 0 chr6 146516411 146516465 -3000572 + AT_rich Low_complexity Low_complexity 1 54 0 2 1702 669 269 0 20 chr6 146516470 146516618 -3000419 + B1_Mur1 SINE Alu 4 148 -1 2 1702 203 175 0 0 chr6 146516619 146516659 -3000378 + A-rich Low_complexity Low_complexity 1 40 0 2 1702 417 286 0 39 chr6 146516957 146517059 -2999978 + RSINE1 SINE B4 2 99 -66 2 1702 372 280 143 36 chr6 146517080 146517276 -2999761 - ID_B1 SINE B4 -5 219 3 2 1702 792 289 97 41 chr6 146517617 146517956 -2999081 + ORR1E LTR MaLR 1 358 -1 3 1702 316 289 144 29 chr6 146518127 146518266 -2998771 + MIRb SINE MIR 18 172 -96 3 1702 262 258 0 273 chr6 146518737 146518876 -2998161 - ID_B1 SINE B4 -2 222 122 3 1702 2772 160 16 6 chr6 146518877 146519367 -2997670 + RLTR31_Mm LTR ERVK 1 495 -66 3 1702 3280 86 21 2 chr6 146519665 146520131 -2996906 + MT2C_Mm LTR ERVL 1 475 0 3 1702 1174 37 0 0 chr6 146520255 146520391 -2996646 + B1_Mm SINE Alu 1 136 -11 3 1702 212 0 36 0 chr6 146520391 146520419 -2996618 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1702 217 310 28 14 chr6 146520722 146520794 -2996243 + PB1D10 SINE Alu 3 75 -42 3 1702 213 221 27 93 chr6 146520809 146520884 -2996153 + B4 SINE B4 9 78 -214 3 1702 330 333 37 7 chr6 146521298 146521434 -2995603 + MER3 DNA MER1_type 2 141 -68 3 1702 1035 112 0 38 chr6 146521693 146521878 -2995159 - L1Md_F3 LINE L1 0 6584 6407 4 1702 324 307 46 23 chr6 146521913 146522043 -2994994 + HAL1 LINE L1 751 883 -1624 4 1702 252 286 65 0 chr6 146523947 146524024 -2993013 + ID4_ SINE ID 2 83 0 4 1702 213 140 60 0 chr6 146524228 146524278 -2992759 + A-rich Low_complexity Low_complexity 3 55 0 4 1702 636 186 71 0 chr6 146524290 146524403 -2992634 + B1_Mur4 SINE Alu 1 121 -29 4 1702 26 0 0 0 chr6 146525582 146525608 -2991429 + AT_rich Low_complexity Low_complexity 1 26 0 4 1702 214 284 15 0 chr6 146525974 146526041 -2990996 + (CG)n Simple_repeat Simple_repeat 2 69 0 4 1702 224 276 74 93 chr6 146527668 146527776 -2989261 + L2c LINE L2 3252 3357 -30 4 1702 282 164 0 0 chr6 146527777 146527832 -2989205 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1702 1174 61 7 0 chr6 146528316 146528463 -2988574 + B1_Mus1 SINE Alu 1 148 0 4 1702 686 262 0 0 chr6 146528644 146528770 -2988267 - B1_Mur3 SINE Alu -23 126 1 5 1702 184 255 39 0 chr6 146529617 146529668 -2987369 - MER5B DNA MER1_type -88 90 38 5 1702 23 86 0 0 chr6 146529722 146529780 -2987257 + AT_rich Low_complexity Low_complexity 1 58 0 5 1702 380 240 120 0 chr6 146530099 146530199 -2986838 + RSINE1 SINE B4 32 143 -22 5 1702 691 284 96 105 chr6 146530227 146530816 -2986221 - L1MD LINE L1 -705 5479 4891 5 1702 266 315 76 18 chr6 146530851 146531022 -2986015 - B3A SINE B2 -16 182 2 5 1702 414 308 36 51 chr6 146531049 146531064 -2985973 - ID_B1 SINE B4 -4 220 86 5 1702 505 274 8 41 chr6 146531064 146531186 -2985851 - B1F SINE Alu -27 122 5 5 1702 913 199 304 62 chr6 146531358 146531809 -2985228 - RMER4B LTR ERVK -9 576 17 5 1702 615 274 89 0 chr6 146531838 146531864 -2985173 - B3 SINE B2 -8 208 183 5 1702 279 0 0 0 chr6 146531864 146531895 -2985142 + (TATG)n Simple_repeat Simple_repeat 4 34 0 6 1702 615 274 89 0 chr6 146531895 146532058 -2984979 - B3 SINE B2 -34 182 3 5 1702 355 286 45 34 chr6 146532197 146532374 -2984663 - L1MD LINE L1 -2671 3475 3297 5 1702 305 296 89 30 chr6 146532391 146532492 -2984545 - PB1D10 SINE Alu -10 107 1 6 1702 298 232 66 96 chr6 146532607 146532774 -2984263 - L1MD LINE L1 -3003 3143 2982 5 1702 599 277 37 55 chr6 146532861 146532908 -2984129 - B3 SINE B2 -2 214 177 6 1702 195 114 0 0 chr6 146532908 146532943 -2984094 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 6 1702 672 276 29 0 chr6 146532943 146533113 -2983924 - B3A SINE B2 -23 175 1 6 1702 551 172 50 10 chr6 146533172 146533272 -2983765 - B1_Mur2 SINE Alu -1 148 45 6 1702 489 62 0 0 chr6 146533913 146533978 -2983059 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1702 1306 203 41 20 chr6 146534414 146534716 -2982321 - ORR1C1 LTR MaLR 0 378 1 6 1702 2323 142 48 10 chr6 146534835 146535227 -2981810 + MTB_Mm LTR MaLR 1 407 0 6 1702 621 187 60 67 chr6 146535671 146535820 -2981217 + B1_Mus1 SINE Alu 1 148 0 6 1702 1240 93 5 47 chr6 146536018 146536210 -2980827 - B2_Mm2 SINE B2 -9 186 3 6 1702 1457 138 197 0 chr6 146536254 146536559 -2980478 - ORR1B2 LTR MaLR 0 367 3 7 1702 787 187 7 7 chr6 146536655 146536790 -2980247 + B1_Mur2 SINE Alu 1 135 -14 7 1702 295 316 116 7 chr6 146536847 146537124 -2979913 - L1MB7 LINE L1 -185 5999 5693 7 1702 584 240 75 43 chr6 146537463 146537650 -2979387 + B3A SINE B2 1 193 -5 7 1702 489 309 79 0 chr6 146538195 146538321 -2978716 + RSINE1 SINE B4 11 146 -19 7 1703 598 149 65 9 chr6 146538775 146538883 -2978154 - B1_Mur2 SINE Alu -1 148 35 7 1703 281 26 26 0 chr6 146538919 146538957 -2978080 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1703 321 289 20 40 chr6 146539239 146539340 -2977697 + ID_B1 SINE B4 84 182 -42 7 1703 358 277 42 21 chr6 146539885 146539981 -2977056 + PB1D10 SINE Alu 10 107 -10 7 1703 335 250 15 0 chr6 146540231 146540299 -2976738 + ID4_ SINE ID 15 83 0 7 1703 231 167 0 0 chr6 146541536 146541578 -2975459 + (TA)n Simple_repeat Simple_repeat 1 42 0 8 1703 651 195 9 0 chr6 146541690 146541803 -2975234 + B1_Mur1 SINE Alu 36 149 0 8 1703 953 150 0 0 chr6 146544035 146544175 -2972862 + B1_Mus2 SINE Alu 1 140 -7 8 1703 360 233 111 0 chr6 146544360 146544450 -2972587 + ID_B1 SINE B4 78 177 -47 8 1703 442 294 597 48 chr6 146544442 146544566 -2972471 + B4A SINE B4 19 201 -91 8 1703 1266 34 0 0 chr6 146544566 146544713 -2972324 + B1_Mus2 SINE Alu 1 147 0 8 1703 442 300 0 111 chr6 146544713 146544802 -2972235 + B4A SINE B4 202 290 -2 8 1703 727 212 20 0 chr6 146545458 146545604 -2971433 - B1_Mur1 SINE Alu 0 149 1 8 1703 27 0 0 0 chr6 146547519 146547546 -2969491 + AT_rich Low_complexity Low_complexity 1 27 0 8 1703 771 184 57 0 chr6 146548336 146548477 -2968560 + B1_Mur4 SINE Alu 2 150 0 8 1703 369 287 94 89 chr6 146548587 146548778 -2968259 + B4 SINE B4 2 193 -99 8 1703 512 307 7 21 chr6 146549314 146549457 -2967580 - RSINE1 SINE B4 -13 152 12 9 1703 1667 108 78 4 chr6 146549457 146549726 -2967311 - L1_Mur2 LINE L1 -125 5752 5464 9 1703 3795 165 138 34 chr6 146549740 146550686 -2966351 + Lx5 LINE L1 6001 7045 -5 9 1703 22 0 0 0 chr6 146551084 146551106 -2965931 + AT_rich Low_complexity Low_complexity 1 22 0 9 1703 420 281 48 3 chr6 146552594 146552705 -2964332 - B1F SINE Alu -1 126 6 9 1703 376 260 169 75 chr6 146552709 146552886 -2964151 - B4A SINE B4 -1 291 97 9 1703 1218 48 7 0 chr6 146552886 146553033 -2964004 - B1_Mus1 SINE Alu 0 148 1 9 1703 376 260 169 75 chr6 146553033 146553121 -2963916 - B4A SINE B4 -196 96 1 9 1703 590 277 7 13 chr6 146553193 146553343 -2963694 - B1F1 SINE Alu 0 149 1 9 1703 235 346 62 57 chr6 146553343 146553427 -2963610 - MT2B LTR ERVL -446 155 71 9 1703 235 300 59 10 chr6 146553731 146553832 -2963205 + RMER15 LTR ERVL 380 485 -90 9 1703 333 273 91 0 chr6 146554143 146554242 -2962795 + PB1D7 SINE Alu 1 108 -12 1 1703 226 136 212 0 chr6 146554945 146555011 -2962026 - Lx8 LINE L1 0 7473 7394 1 1703 680 210 118 10 chr6 146555041 146555224 -2961813 + B3 SINE B2 2 198 -18 1 1703 529 188 139 8 chr6 146556375 146556504 -2960533 - B1_Mur3 SINE Alu -3 146 1 1 1703 1350 91 16 21 chr6 146556536 146556726 -2960311 - B2_Mm2 SINE B2 -5 190 2 1 1703 601 205 36 0 chr6 146557217 146557329 -2959708 + B1F2 SINE Alu 34 149 0 1 1703 963 179 60 20 chr6 146557486 146557685 -2959352 - B3 SINE B2 -6 210 4 1 1703 509 269 8 8 chr6 146557944 146558064 -2958973 + PB1D7 SINE Alu 1 120 0 1 1703 23 0 0 0 chr6 146558071 146558094 -2958943 + AT_rich Low_complexity Low_complexity 1 23 0 1 1703 277 138 119 17 chr6 146558646 146558705 -2958332 + ID4_ SINE ID 1 65 -18 1 1703 432 202 11 11 chr6 146558714 146558804 -2958233 + ID_B1 SINE B4 133 222 -2 1 1703 326 208 12 38 chr6 146558858 146558938 -2958099 - PB1D7 SINE Alu -3 117 40 1 1703 237 146 0 0 chr6 146558941 146558989 -2958048 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1703 550 216 13 0 chr6 146559097 146559210 -2957827 - PB1D10 SINE Alu 0 117 1 1 1703 315 200 53 79 chr6 146559488 146559510 -2957527 + L1MD LINE L1 3075 3094 -3052 1 1703 3224 31 3 8 chr6 146559510 146559898 -2957139 + L1Md_F3 LINE L1 6198 6583 -1 1 1703 315 200 53 79 chr6 146559898 146559989 -2957048 + L1MD LINE L1 3095 3185 -2961 1 1703 253 185 15 15 chr6 146560244 146560310 -2956727 + CT-rich Low_complexity Low_complexity 2 67 0 1 1703 447 207 16 58 chr6 146560310 146560416 -2956621 - B1F1 SINE Alu -6 111 9 1 1703 218 333 26 79 chr6 146560330 146560444 -2956593 - B4 SINE B4 -113 179 72 1 1703 972 110 0 0 chr6 146560964 146561100 -2955937 - B1_Mus1 SINE Alu -9 139 4 1 1703 288 0 0 0 chr6 146561989 146562021 -2955016 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1703 318 256 41 82 chr6 146562346 146562516 -2954521 + ID_B1 SINE B4 51 213 -11 1 1703 476 273 23 0 chr6 146562391 146562523 -2954514 + B1F SINE Alu 11 145 -4 1 1703 800 218 96 5 chr6 146562532 146562730 -2954307 + B3 SINE B2 1 216 0 1 1703 806 257 141 0 chr6 146563155 146563404 -2953633 + B4A SINE B4 1 284 -8 1 1703 585 186 48 41 chr6 146563425 146563564 -2953473 - ORR1D1 LTR MaLR -2 372 233 1 1703 189 74 0 0 chr6 146563564 146563591 -2953446 + (ACTTG)n Simple_repeat Simple_repeat 5 31 0 1 1703 671 325 27 57 chr6 146563620 146563920 -2953117 + MER31A LTR ERV1 8 298 -187 1 1703 1176 171 97 90 chr6 146563932 146564295 -2952742 + RLTR20C LTR ERVK 1 490 -88 1 1703 477 0 0 0 chr6 146564295 146564348 -2952689 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1703 433 187 156 50 chr6 146564348 146564431 -2952606 + RLTR20C LTR ERVK 491 578 0 1 1703 413 129 0 0 chr6 146564674 146564736 -2952301 - ID_B1 SINE B4 -10 214 153 1 1703 1053 244 27 47 chr6 146565252 146565510 -2951527 - MTE2b LTR MaLR 0 379 127 1 1703 280 286 80 80 chr6 146565518 146565693 -2951344 + L1MC4 LINE L1 7865 8039 -3 1 1703 326 272 101 50 chr6 146565829 146566121 -2950916 + L2a LINE L2 2797 3117 -309 1 1703 180 0 0 0 chr6 146566387 146566407 -2950630 + (TTTTA)n Simple_repeat Simple_repeat 5 24 0 1 1703 330 167 0 0 chr6 146566407 146566459 -2950578 - B3 SINE B2 -16 200 149 1 1703 2033 116 56 3 chr6 146566459 146566762 -2950275 + ORR1A2 LTR MaLR 1 319 -8 1 1703 750 214 62 0 chr6 146566764 146566909 -2950128 - B3 SINE B2 -61 155 2 1 1703 241 259 35 0 chr6 146567274 146567332 -2949705 + Lx8 LINE L1 7092 7151 -322 1 1703 912 189 6 0 chr6 146567388 146567547 -2949490 - B3A SINE B2 -35 163 4 1 1703 668 279 21 21 chr6 146567550 146567744 -2949293 + Lx8 LINE L1 7222 7415 -58 1 1703 348 182 19 75 chr6 146567759 146567866 -2949171 + Lx8 LINE L1 7367 7467 -6 1 1703 1660 42 0 0 chr6 146567885 146568078 -2948959 + B2_Mm1a SINE B2 1 193 0 1 1703 21 0 0 0 chr6 146568088 146568109 -2948928 + AT_rich Low_complexity Low_complexity 1 21 0 1 1703 486 239 90 62 chr6 146568720 146568898 -2948139 + MLT1A0 LTR MaLR 56 238 -127 1 1703 449 248 53 0 chr6 146568940 146569053 -2947984 + B1F2 SINE Alu 5 123 -26 1 1703 872 144 249 0 chr6 146569154 146569327 -2947710 + B3 SINE B2 1 216 0 1 1703 306 268 0 47 chr6 146569629 146569715 -2947322 - B3A SINE B2 0 198 117 1 1703 552 243 107 0 chr6 146569960 146570137 -2946900 + B3A SINE B2 3 198 0 1 1703 631 278 142 0 chr6 146571482 146571658 -2945379 - ID_B1 SINE B4 -23 201 1 1 1703 1059 255 0 5 chr6 146572425 146572634 -2944403 + B3 SINE B2 1 208 -8 1 1703 906 207 93 5 chr6 146572697 146572891 -2944146 - B3 SINE B2 -5 211 1 1 1703 407 221 88 154 chr6 146572901 146573050 -2943987 - B4 SINE B4 -73 219 79 1 1703 420 77 0 0 chr6 146573050 146573115 -2943922 + (TTGG)n Simple_repeat Simple_repeat 2 66 0 1 1703 407 221 88 154 chr6 146573115 146573147 -2943890 - B4 SINE B4 -214 78 50 1 1703 388 308 33 27 chr6 146573203 146573353 -2943684 + BC1_Mm scRNA scRNA 1 151 -1 1 1703 974 236 10 15 chr6 146573483 146573689 -2943348 - B3 SINE B2 0 216 12 1 1703 3107 31 0 0 chr6 146574178 146574538 -2942499 + L1Md_T LINE L1 6223 6582 0 1 1703 385 248 0 45 chr6 146574885 146574995 -2942042 + PB1D7 SINE Alu 1 105 -15 1 1703 340 317 41 0 chr6 146575080 146575225 -2941812 + Lx8 LINE L1 7067 7217 -256 1 1703 862 221 25 45 chr6 146575757 146575956 -2941081 + B3 SINE B2 15 209 -7 1 1703 273 98 0 0 chr6 146576216 146576257 -2940780 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1703 762 265 76 18 chr6 146576468 146576681 -2940356 + B4A SINE B4 1 226 -66 1 1703 513 80 0 0 chr6 146576681 146576756 -2940281 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1703 1849 133 150 19 chr6 146576772 146577133 -2939904 + RMER17C LTR ERVK 3 410 0 1 1703 305 302 191 51 chr6 146577202 146577317 -2939720 - MER2 DNA MER2_type -141 204 62 1 1703 1250 21 7 0 chr6 146577317 146577462 -2939575 + B1_Mus2 SINE Alu 1 146 -1 1 1703 468 0 0 0 chr6 146577462 146577514 -2939523 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1 1703 305 302 191 51 chr6 146577514 146577575 -2939462 - MER2 DNA MER2_type -284 61 3 1 1703 1892 144 149 3 chr6 146577952 146578294 -2938743 - ORR1B1 LTR MaLR -2 392 1 1 1703 424 255 39 0 chr6 146578294 146578388 -2938649 + ID_B1 SINE B4 120 217 -7 1 1703 560 274 65 50 chr6 146579041 146579241 -2937796 + ID_B1 SINE B4 2 204 -20 1 1703 1178 68 7 0 chr6 146579354 146579501 -2937536 - B1_Mus1 SINE Alu 0 148 1 1 1703 240 313 12 12 chr6 146579674 146579758 -2937279 + MIR SINE MIR 46 129 -133 1 1703 267 197 155 0 chr6 146580017 146580088 -2936949 + ID4_ SINE ID 1 82 -1 1 1703 249 119 0 0 chr6 146580132 146580174 -2936863 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1703 251 321 12 0 chr6 146580251 146580332 -2936705 - ID4_ SINE ID 0 83 2 1 1703 278 241 63 79 chr6 146580339 146580465 -2936572 - PB1 SINE Alu -3 124 1 1 1703 802 265 43 0 chr6 146581580 146581791 -2935246 - ID_B1 SINE B4 -3 221 2 1 1703 486 0 0 0 chr6 146582046 146582100 -2934937 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1703 282 204 110 3 chr6 146582556 146582651 -2934386 - B1F1 SINE Alu 0 120 19 1 1703 223 338 0 0 chr6 146582590 146582670 -2934367 - ID_B1 SINE B4 -64 160 81 1 1703 24 32 0 0 chr6 146582987 146583018 -2934019 + GC_rich Low_complexity Low_complexity 1 31 0 1 1703 24 77 0 0 chr6 146583064 146583116 -2933921 + GC_rich Low_complexity Low_complexity 1 52 0 1 1703 726 98 16 8 chr6 146583233 146583356 -2933681 + (TTCC)n Simple_repeat Simple_repeat 4 127 0 1 1703 844 130 92 0 chr6 146583396 146583527 -2933510 - B1_Mus1 SINE Alu -5 143 1 1 1703 1125 15 0 0 chr6 146583557 146583688 -2933349 + (TC)n Simple_repeat Simple_repeat 1 131 0 1 1703 493 264 25 0 chr6 146583689 146583810 -2933227 - ID_B1 SINE B4 -11 213 90 1 1703 231 227 155 47 chr6 146583954 146584102 -2932935 + L1MC3 LINE L1 7605 7768 -17 1 1703 288 293 35 42 chr6 146584125 146584231 -2932806 + B1F SINE Alu 6 113 -7 1 1703 1196 142 66 0 chr6 146584307 146584518 -2932519 - URR1B DNA MER1_type 0 225 1 1 1703 448 161 12 103 chr6 146584752 146584871 -2932166 - B1F SINE Alu 0 149 43 1 1703 348 24 0 0 chr6 146584884 146584925 -2932112 + (TAAAA)n Simple_repeat Simple_repeat 3 43 0 1 1703 888 175 42 89 chr6 146585262 146585446 -2931591 - B3 SINE B2 0 216 38 1 1703 1590 16 44 0 chr6 146585446 146585629 -2931408 - B2_Mm1a SINE B2 -1 192 2 1 1703 888 175 42 89 chr6 146585629 146585657 -2931380 - B3 SINE B2 -179 37 14 1 1703 488 291 0 0 chr6 146585953 146586070 -2930967 + PB1D9 SINE Alu 4 120 0 1 1703 875 159 20 7 chr6 146586236 146586382 -2930655 + B1_Mur4 SINE Alu 1 148 -2 1 1703 310 285 188 7 chr6 146586401 146586539 -2930498 + RSINE1 SINE B4 3 165 0 1 1703 22 80 0 0 chr6 146586539 146586589 -2930448 + AT_rich Low_complexity Low_complexity 1 50 0 1 1703 305 346 0 0 chr6 146587299 146587403 -2929634 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1703 1033 106 0 0 chr6 146587466 146587607 -2929430 - B1_Mur3 SINE Alu 0 149 9 1 1703 493 217 32 115 chr6 146587468 146587624 -2929413 - B4 SINE B4 -69 223 81 1 1703 890 159 7 7 chr6 146587765 146587911 -2929126 + B1_Mus1 SINE Alu 2 147 -1 1 1703 225 203 152 0 chr6 146588364 146588423 -2928614 - MER31A LTR ERV1 -412 73 6 1 1703 513 266 69 41 chr6 146588806 146588951 -2928086 + RSINE1 SINE B4 17 165 0 2 1703 25 0 0 0 chr6 146589039 146589064 -2927973 + AT_rich Low_complexity Low_complexity 1 25 0 2 1703 548 208 160 0 chr6 146589128 146589253 -2927784 - B1_Mur2 SINE Alu -4 145 1 2 1703 1959 167 79 0 chr6 146589589 146589942 -2927095 + RLTR14 LTR ERV1 1 381 -1 2 1703 384 220 78 21 chr6 146589977 146590109 -2926928 + MLT1A1 LTR MaLR 215 396 -12 2 1703 440 192 101 0 chr6 146590334 146590347 -2926690 + B4 SINE B4 71 93 -199 2 1703 716 55 0 0 chr6 146590347 146590438 -2926599 + B1_Mus2 SINE Alu 3 93 -54 2 1703 414 221 42 0 chr6 146591747 146591842 -2925195 + PB1D7 SINE Alu 22 120 0 2 1703 369 173 65 26 chr6 146592125 146592202 -2924835 - B1_Mur1 SINE Alu 0 149 70 2 1703 1034 68 13 58 chr6 146592333 146592488 -2924549 + B1_Mus1 SINE Alu 1 148 0 2 1703 459 215 111 37 chr6 146593627 146593762 -2923275 - B1_Mur1 SINE Alu 0 149 5 2 1703 644 267 31 122 chr6 146593851 146594007 -2923030 - ID_B1 SINE B4 -21 203 54 2 1703 1196 29 0 0 chr6 146594007 146594144 -2922893 + B1_Mus1 SINE Alu 2 138 -10 2 1703 207 0 0 0 chr6 146594144 146594167 -2922870 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1703 644 267 31 122 chr6 146594167 146594231 -2922806 - ID SINE ID -171 53 3 2 1703 723 165 15 15 chr6 146594380 146594515 -2922522 + B1_Mus1 SINE Alu 1 135 -13 2 1703 741 187 127 12 chr6 146594615 146594788 -2922249 - ID_B1 SINE B4 0 224 32 2 1703 264 207 0 0 chr6 146594793 146594851 -2922186 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1703 180 0 0 0 chr6 146594919 146594939 -2922098 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2 1703 275 288 0 0 chr6 146594944 146595003 -2922034 - B4A SINE B4 -80 212 154 2 1703 911 215 74 15 chr6 146595121 146595324 -2921713 + B3 SINE B2 1 215 -1 2 1703 295 250 163 61 chr6 146595341 146595439 -2921598 + RSINE1 SINE B4 2 109 -56 2 1703 835 217 32 21 chr6 146595495 146595683 -2921354 - B3 SINE B2 0 216 27 2 1703 435 212 19 48 chr6 146596284 146596388 -2920649 - PB1D9 SINE Alu -19 101 1 2 1703 22 0 0 0 chr6 146596906 146596928 -2920109 + AT_rich Low_complexity Low_complexity 1 22 0 2 1703 536 301 45 7 chr6 146596929 146597083 -2919954 - RSINE1 SINE B4 -3 162 3 2 1703 1724 21 0 0 chr6 146597239 146597431 -2919606 - B2_Mm1a SINE B2 0 193 2 2 1703 22 0 0 0 chr6 146597837 146597859 -2919178 + AT_rich Low_complexity Low_complexity 1 22 0 2 1703 180 111 0 0 chr6 146597901 146597928 -2919109 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2 1703 1177 81 0 0 chr6 146598102 146598250 -2918787 + B1_Mus1 SINE Alu 1 148 0 2 1703 313 225 8 136 chr6 146599105 146599235 -2917802 - ID4 SINE ID -38 114 2 2 1703 532 213 169 32 chr6 146599673 146599862 -2917175 - B3 SINE B2 0 216 2 2 1703 292 300 82 93 chr6 146600392 146600493 -2916544 - ERVL-E-int LTR ERVL -4273 1394 1288 2 1703 807 255 72 15 chr6 146600493 146600688 -2916349 - B3 SINE B2 -10 206 1 2 1703 292 300 82 93 chr6 146600688 146600865 -2916172 - ERVL-E-int LTR ERVL -4380 1287 1119 2 1703 1185 68 0 0 chr6 146600918 146601065 -2915972 + B1_Mus2 SINE Alu 1 147 0 2 1703 1236 54 0 0 chr6 146601159 146601306 -2915731 + B1_Mus2 SINE Alu 1 147 0 2 1703 817 124 145 17 chr6 146601335 146601507 -2915530 + B2_Mm2 SINE B2 1 194 -1 2 1703 2896 60 18 3 chr6 146601921 146602304 -2914733 - MTB LTR MaLR -11 389 1 2 1703 764 175 20 53 chr6 146602440 146602591 -2914446 + B1_Mm SINE Alu 2 147 0 2 1703 213 338 62 12 chr6 146602824 146602905 -2914132 - PB1D10 SINE Alu -32 85 1 2 1703 269 189 0 70 chr6 146602946 146603003 -2914034 - B1_Mur4 SINE Alu 0 150 98 2 1703 270 250 0 18 chr6 146603007 146603064 -2913973 - B3A SINE B2 -142 56 1 2 1703 507 205 42 25 chr6 146603245 146603365 -2913672 + B1F2 SINE Alu 26 147 -2 2 1703 489 246 50 60 chr6 146604053 146604252 -2912785 + B3A SINE B2 1 197 -1 2 1703 593 218 65 0 chr6 146604262 146604386 -2912651 - B1_Mur1 SINE Alu -14 135 4 2 1703 533 164 57 91 chr6 146604407 146604556 -2912481 + MTE2b LTR MaLR 204 351 -28 2 1703 507 179 134 0 chr6 146604555 146604667 -2912370 - B1F SINE Alu 0 149 23 2 1703 385 285 32 89 chr6 146604674 146604832 -2912205 - B1_Mur3 SINE Alu 0 149 1 2 1703 1252 27 14 0 chr6 146605097 146605244 -2911793 + B1_Mur4 SINE Alu 2 150 0 2 1703 23 0 0 0 chr6 146606171 146606194 -2910843 + AT_rich Low_complexity Low_complexity 1 23 0 2 1703 336 263 0 13 chr6 146606493 146606570 -2910467 + HAL1-3A_ME LINE L1 1976 2051 -807 2 1703 836 162 49 0 chr6 146606571 146606713 -2910324 + B1_Mur1 SINE Alu 1 149 0 2 1703 25 51 0 0 chr6 146607022 146607061 -2909976 + AT_rich Low_complexity Low_complexity 1 39 0 2 1703 1319 92 11 0 chr6 146607117 146607301 -2909736 - B2_Mm1t SINE B2 -6 187 2 2 1703 23 33 0 0 chr6 146607307 146607337 -2909700 + AT_rich Low_complexity Low_complexity 1 30 0 2 1703 774 174 241 11 chr6 146607382 146607556 -2909481 + B3 SINE B2 2 215 -1 2 1703 305 259 99 0 chr6 146607780 146607861 -2909176 + B1F1 SINE Alu 24 112 -37 2 1703 959 144 7 0 chr6 146607986 146608132 -2908905 + B1_Mur4 SINE Alu 4 150 0 2 1703 378 331 0 14 chr6 146608291 146608429 -2908608 + L1M5 LINE L1 4579 4714 -1432 2 1703 263 264 42 0 chr6 146608449 146608521 -2908516 + B2_Mm2 SINE B2 1 75 -120 2 1703 231 221 55 68 chr6 146608458 146608531 -2908506 + tRNA-Ala-GCY_ tRNA tRNA 4 75 0 2 1703 401 214 25 19 chr6 146608662 146608824 -2908213 + (TA)n Simple_repeat Simple_repeat 2 164 0 2 1703 383 212 48 48 chr6 146608899 146609003 -2908034 + L1MB7 LINE L1 6049 6152 -32 2 1703 366 219 98 66 chr6 146609150 146609272 -2907765 + MT2B LTR ERVL 153 278 -323 2 1703 726 135 87 15 chr6 146609163 146609294 -2907743 + B1_Mus1 SINE Alu 8 148 0 2 1703 249 163 0 0 chr6 146610062 146610111 -2906926 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1703 273 238 0 31 chr6 146610123 146610188 -2906849 - B4A SINE B4 -12 280 218 2 1703 1321 85 11 0 chr6 146610630 146610807 -2906230 + B2_Mm1t SINE B2 1 179 -14 2 1703 1239 41 7 0 chr6 146610828 146610974 -2906063 - B1_Mus1 SINE Alu 0 148 2 2 1703 938 203 69 0 chr6 146611002 146611204 -2905833 - B3 SINE B2 0 216 1 2 1703 511 296 22 16 chr6 146611346 146611528 -2905509 - B3A SINE B2 -14 184 2 2 1703 331 291 75 92 chr6 146611529 146611703 -2905334 + Charlie1a DNA MER1_type 218 388 -1067 2 1703 522 296 65 13 chr6 146611786 146611940 -2905097 + Charlie1a DNA MER1_type 569 730 -725 2 1703 324 218 22 52 chr6 146611972 146612078 -2904959 + B1F SINE Alu 3 143 -6 2 1703 392 274 36 73 chr6 146612067 146612122 -2904915 + Charlie1a DNA MER1_type 989 1044 -411 2 1703 335 294 73 7 chr6 146612122 146612259 -2904778 + B1_Mur3 SINE Alu 2 147 -2 2 1703 392 274 36 73 chr6 146612259 146612368 -2904669 + Charlie1a DNA MER1_type 1045 1147 -308 2 1703 312 242 12 11 chr6 146612474 146612556 -2904481 - ID2 SINE ID -58 94 17 2 1703 262 300 130 41 chr6 146612838 146612856 -2904181 - MT2B2 LTR ERVL -273 311 230 2 1703 348 263 140 0 chr6 146612856 146612875 -2904162 - ID_B1 SINE B4 -14 210 82 2 1703 351 245 160 0 chr6 146612875 146612969 -2904068 - B1F1 SINE Alu -40 109 1 2 1703 262 300 130 41 chr6 146612970 146612984 -2904053 - MT2B2 LTR ERVL -273 229 153 2 1703 185 0 40 0 chr6 146613472 146613497 -2903540 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2 1703 21 57 0 0 chr6 146613941 146613976 -2903061 + AT_rich Low_complexity Low_complexity 1 35 0 2 1703 633 232 55 27 chr6 146613979 146614125 -2902912 - RSINE1 SINE B4 -13 152 3 2 1703 390 74 0 0 chr6 146614307 146614361 -2902676 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 2 1703 306 0 0 0 chr6 146614363 146614397 -2902640 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1703 501 17 0 0 chr6 146614397 146614454 -2902583 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1703 276 306 71 0 chr6 146614461 146614559 -2902478 + B4A SINE B4 175 279 -13 2 1703 342 0 0 0 chr6 146614654 146614692 -2902345 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1703 501 17 0 0 chr6 146614692 146614749 -2902288 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1703 276 306 71 0 chr6 146614756 146614854 -2902183 + B4A SINE B4 175 279 -13 2 1703 517 235 43 9 chr6 146615464 146615580 -2901457 + MTEb LTR MaLR 65 184 -195 2 1703 246 157 59 0 chr6 146615581 146615632 -2901405 + MTEb LTR MaLR 322 375 -4 2 1703 1036 134 132 15 chr6 146615710 146615907 -2901130 - URR1B DNA MER1_type -5 220 1 2 1703 545 337 85 35 chr6 146616130 146616471 -2900566 + LTR87 LTR ERVL? 230 587 -37 2 1703 998 191 0 0 chr6 146617244 146617422 -2899615 - Lx6 LINE L1 -2 7458 7281 2 1703 250 248 125 2 chr6 146617616 146617697 -2899340 + PB1D7 SINE Alu 9 97 -23 2 1703 4271 178 26 3 chr6 146617701 146618483 -2898554 + Lx2B LINE L1 6197 6996 -4 2 1703 571 302 0 18 chr6 146618529 146618694 -2898343 + RSINE1 SINE B4 2 163 -2 2 1703 638 268 93 107 chr6 146618734 146619098 -2897939 + ORR1E LTR MaLR 1 359 0 2 1703 875 197 26 37 chr6 146619160 146619321 -2897716 + B3 SINE B2 1 166 -50 2 1703 444 51 0 0 chr6 146619321 146619380 -2897657 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1703 875 197 26 37 chr6 146619380 146619408 -2897629 + B3 SINE B2 167 188 -28 2 1703 34 42 0 0 chr6 146619473 146619521 -2897516 + AT_rich Low_complexity Low_complexity 1 48 0 2 1703 424 123 15 0 chr6 146619653 146619718 -2897319 - B1_Mus1 SINE Alu -81 67 2 2 1703 636 14 0 0 chr6 146621046 146621119 -2895918 + (TC)n Simple_repeat Simple_repeat 2 74 0 2 1703 423 0 0 0 chr6 146621120 146621167 -2895870 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1703 266 87 0 0 chr6 146621308 146621354 -2895683 - B3 SINE B2 0 216 171 3 1703 574 211 79 79 chr6 146621353 146621492 -2895545 + B3A SINE B2 56 194 -4 3 1703 294 29 0 0 chr6 146621634 146621669 -2895368 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1703 1239 41 0 7 chr6 146622626 146622774 -2894263 - B1_Mus2 SINE Alu 0 147 1 3 1703 670 259 47 144 chr6 146622998 146623325 -2893712 - ORR1E LTR MaLR 0 379 42 3 1703 627 278 40 67 chr6 146624446 146624743 -2892294 + B4A SINE B4 1 289 -3 3 1703 350 206 27 0 chr6 146626157 146626230 -2890807 + ID4 SINE ID 2 76 -7 3 1703 965 158 0 6 chr6 146626274 146626452 -2890585 + GA-rich Low_complexity Low_complexity 4 180 0 3 1703 642 321 68 32 chr6 146626454 146626734 -2890303 + MLT1C LTR MaLR 171 460 -7 3 1703 814 209 88 0 chr6 146627036 146627218 -2889819 - B3A SINE B2 0 198 1 3 1703 284 64 0 21 chr6 146627437 146627485 -2889552 + (CCA)n Simple_repeat Simple_repeat 1 47 0 3 1703 662 330 96 75 chr6 146627577 146627961 -2889076 + MER21B LTR ERV1 1 392 -471 3 1703 1930 108 58 70 chr6 146628445 146628775 -2888262 - ORR1A2 LTR MaLR -1 326 1 3 1703 779 274 84 43 chr6 146628980 146629476 -2887561 - L1MA5A LINE L1 -276 6024 5516 3 1703 999 242 80 25 chr6 146630261 146630587 -2886450 - RCHARR1 DNA MER1_type -7 967 624 3 1703 4430 110 42 20 chr6 146630587 146631336 -2885701 - RMER17A LTR ERVK 0 751 1 3 1703 485 243 9 9 chr6 146631336 146631446 -2885591 - RCHARR1 DNA MER1_type -345 629 520 3 1703 339 240 0 51 chr6 146631443 146631522 -2885515 - ID_B1 SINE B4 -9 215 141 3 1703 299 287 210 34 chr6 146631522 146631562 -2885475 - B1F1 SINE Alu -9 140 1 3 1703 477 0 0 0 chr6 146632168 146632221 -2884816 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1703 775 232 120 29 chr6 146632248 146632523 -2884514 - RMER10A LTR ERVL -20 422 123 3 1703 385 205 152 0 chr6 146632943 146633055 -2883982 + ID_B1 SINE B4 86 214 -10 3 1703 893 247 74 95 chr6 146633472 146633808 -2883229 + MTEb LTR MaLR 1 329 -50 3 1703 202 367 9 52 chr6 146634407 146634522 -2882515 - L2b LINE L2 -4 3371 3262 3 1703 399 243 8 51 chr6 146635217 146635334 -2881703 + PB1D10 SINE Alu 5 116 -1 3 1703 870 77 138 0 chr6 146635749 146635879 -2881158 - B1_Mus1 SINE Alu 0 148 1 3 1703 685 234 52 65 chr6 146636198 146636353 -2880684 + RSINE1 SINE B4 13 165 0 3 1703 546 16 0 0 chr6 146636438 146636501 -2880536 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1703 646 285 62 10 chr6 146636841 146637050 -2879987 + ID_B1 SINE B4 1 220 -4 3 1703 441 198 33 11 chr6 146637058 146637150 -2879887 + MTC LTR MaLR 1 94 -327 3 1703 381 241 102 0 chr6 146638019 146638127 -2878910 - PB1D7 SINE Alu -1 119 1 3 1703 2725 107 55 51 chr6 146638225 146638696 -2878341 + IAPLTR2_Mm LTR ERVK 1 473 -2 3 1703 3036 49 6 0 chr6 146638697 146639353 -2877684 + IAPEz-int LTR ERVK 7 591 -5890 3 1703 460 66 0 32 chr6 146639385 146639448 -2877589 + IAPEz-int LTR ERVK 1359 1419 -5062 3 1703 1807 123 4 4 chr6 146639437 146639699 -2877338 + IAPEz-int LTR ERVK 2236 2497 -5183 3 1703 938 80 24 0 chr6 146639694 146639819 -2877218 + IAPEy-int LTR ERVK 4799 4926 -2587 3 1703 26852 15 3 0 chr6 146639819 146642767 -2874270 + IAPEz-int LTR ERVK 3525 6481 0 3 1703 2740 105 55 51 chr6 146642767 146643238 -2873799 + IAPLTR2_Mm LTR ERVK 1 473 -2 3 1703 465 176 11 34 chr6 146643270 146643358 -2873679 + B1_Mur4 SINE Alu 13 98 -52 3 1703 1128 86 0 0 chr6 146643471 146643611 -2873426 - B1_Mus1 SINE Alu -8 140 1 3 1703 896 209 11 6 chr6 146643633 146643811 -2873226 - B3 SINE B2 -6 210 32 3 1703 571 248 198 74 chr6 146643797 146644080 -2872957 - ORR1E LTR MaLR -41 318 1 3 1703 239 360 14 29 chr6 146644113 146644253 -2872784 - MLT1G LTR MaLR -326 265 128 3 1703 216 86 0 0 chr6 146644272 146644307 -2872730 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1703 25 0 0 0 chr6 146644522 146644547 -2872490 + AT_rich Low_complexity Low_complexity 1 25 0 3 1703 585 309 59 0 chr6 146645484 146645636 -2871401 - RSINE1 SINE B4 -2 163 3 3 1703 195 184 0 0 chr6 146645666 146645704 -2871333 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3 1703 361 299 20 53 chr6 146645713 146645865 -2871172 - RSINE1 SINE B4 -17 148 2 3 1703 246 231 0 0 chr6 146645982 146646047 -2870990 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1703 498 162 64 112 chr6 146647006 146647131 -2869906 + B3 SINE B2 1 119 -97 3 1703 2722 95 206 23 chr6 146647113 146647599 -2869438 + ORR1A2-int LTR MaLR 1388 1962 -1 3 1703 2306 76 0 65 chr6 146647602 146647941 -2869096 + ORR1A2 LTR MaLR 3 319 -8 3 1703 240 208 0 20 chr6 146647981 146648030 -2869007 + CT-rich Low_complexity Low_complexity 3 50 0 3 1703 303 28 0 0 chr6 146648405 146648441 -2868596 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1703 531 256 41 145 chr6 146648446 146648715 -2868322 + MTEb LTR MaLR 139 379 0 3 1703 21 0 0 0 chr6 146648823 146648844 -2868193 + AT_rich Low_complexity Low_complexity 1 21 0 3 1703 1093 150 22 0 chr6 146648910 146649090 -2867947 - B2_Mm2 SINE B2 -1 194 11 3 1703 1779 179 34 3 chr6 146649059 146649379 -2867658 + MTC LTR MaLR 89 418 -3 3 1703 1197 55 7 0 chr6 146649410 146649556 -2867481 + B1_Mus1 SINE Alu 2 148 0 3 1703 616 285 158 21 chr6 146649648 146650035 -2867002 + L1MC2 LINE L1 5893 6332 -12 3 1703 699 92 0 0 chr6 146650064 146650162 -2866875 + B1_Mus1 SINE Alu 36 133 -15 3 1703 1011 251 175 23 chr6 146650402 146650712 -2866325 - MTE2b LTR MaLR 0 370 25 3 1703 290 296 14 0 chr6 146650747 146650818 -2866219 - BC1_Mm scRNA scRNA -74 78 7 3 1703 340 291 48 10 chr6 146651850 146651954 -2865083 + RMER15 LTR ERVL 414 521 -54 3 1703 324 265 122 0 chr6 146651984 146652082 -2864955 - HAL1 LINE L1 -855 1652 1543 3 1703 324 0 0 0 chr6 146652140 146652176 -2864861 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1703 582 15 0 0 chr6 146652176 146652242 -2864795 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 1703 221 0 0 33 chr6 146652469 146652499 -2864538 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 3 1703 461 188 12 12 chr6 146652499 146652570 -2864467 - B4A SINE B4 -77 215 144 3 1703 433 242 44 95 chr6 146652574 146652597 -2864440 + B1_Mur2 SINE Alu 19 36 -113 3 1703 2514 77 3 38 chr6 146652597 146652703 -2864334 + ORR1A2 LTR MaLR 1 104 -223 3 1703 1699 21 0 10 chr6 146652703 146652897 -2864140 + B2_Mm1a SINE B2 2 193 0 3 1703 2514 77 3 38 chr6 146652897 146653129 -2863908 + ORR1A2 LTR MaLR 105 327 0 3 1703 433 242 44 95 chr6 146653129 146653242 -2863795 + B1_Mur2 SINE Alu 37 148 -1 3 1703 799 188 78 26 chr6 146653242 146653267 -2863770 + B3 SINE B2 3 26 -190 3 1703 1170 75 0 0 chr6 146653267 146653414 -2863623 - B1_Mus1 SINE Alu 0 148 2 3 1703 799 188 78 26 chr6 146653414 146653579 -2863458 + B3 SINE B2 27 203 -13 3 1703 421 141 77 0 chr6 146653682 146653760 -2863277 - B2_Mm2 SINE B2 -16 179 96 3 1703 1231 53 0 0 chr6 146653758 146653910 -2863127 - B2_Mm2 SINE B2 -42 153 2 3 1703 442 283 31 44 chr6 146654056 146654215 -2862822 - RSINE1 SINE B4 -6 159 3 3 1703 869 248 14 24 chr6 146654246 146654453 -2862584 + B3 SINE B2 1 205 -11 3 1703 25 31 0 0 chr6 146654454 146654486 -2862551 + AT_rich Low_complexity Low_complexity 1 32 0 3 1703 2512 129 40 46 chr6 146655732 146656210 -2860827 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1703 3018 46 6 22 chr6 146656210 146656880 -2860157 + IAPEz-int LTR ERVK 8 591 -5890 3 1703 460 66 0 32 chr6 146656912 146656975 -2860062 + IAPEz-int LTR ERVK 1359 1419 -5062 3 1703 1818 123 4 4 chr6 146656964 146657226 -2859811 + IAPEz-int LTR ERVK 2236 2497 -5183 3 1703 938 80 24 0 chr6 146657221 146657346 -2859691 + IAPEy-int LTR ERVK 4799 4926 -2587 3 1703 26725 16 4 0 chr6 146657346 146660290 -2856747 + IAPEz-int LTR ERVK 3525 6481 0 3 1703 2533 139 42 47 chr6 146660290 146660803 -2856234 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1703 202 195 0 0 chr6 146660803 146660844 -2856193 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1703 437 214 170 67 chr6 146660844 146661009 -2856028 - B3A SINE B2 -16 182 1 3 1703 1639 212 80 22 chr6 146665590 146665951 -2851086 + RLTR18 LTR ERVK 4 385 -231 3 1703 432 321 0 28 chr6 146666190 146666299 -2850738 - RSINE1 SINE B4 -58 107 2 3 1703 971 107 6 0 chr6 146666705 146666883 -2850154 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 3 1703 813 144 23 0 chr6 146666912 146667085 -2849952 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 3 1703 666 287 23 0 chr6 146667158 146667332 -2849705 - B3A SINE B2 -20 178 1 3 1703 465 283 114 4 chr6 146667404 146667631 -2849406 + Charlie4a DNA MER1_type 67 318 -190 3 1703 234 154 0 0 chr6 146667648 146667687 -2849350 - MLT1F2 LTR MaLR -5 555 517 3 1703 201 121 0 0 chr6 146667718 146667751 -2849286 + (T)n Simple_repeat Simple_repeat 1 33 0 3 1703 1173 55 0 7 chr6 146667751 146667899 -2849138 - B1_Mm SINE Alu 0 147 1 3 1703 2481 175 28 18 chr6 146667899 146668399 -2848638 - RLTR11A2 LTR ERVK -22 505 1 3 1703 706 199 7 35 chr6 146668428 146668569 -2848468 + B1_Mus1 SINE Alu 2 138 -10 3 1703 207 0 0 0 chr6 146668569 146668592 -2848445 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1703 352 302 191 6 chr6 146668595 146668768 -2848269 - MLT1F2 LTR MaLR -65 495 291 3 1703 483 375 50 15 chr6 146668845 146669105 -2847932 - MLT1F2 LTR MaLR -234 326 58 3 1703 1156 62 7 0 chr6 146669111 146669257 -2847780 + B1_Mm SINE Alu 1 147 0 3 1703 321 308 23 23 chr6 146669336 146669469 -2847568 + Charlie4a DNA MER1_type 333 465 -43 3 1704 306 50 0 0 chr6 146669890 146669930 -2847107 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1704 245 51 0 25 chr6 146669930 146669970 -2847067 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 3 1704 693 236 16 27 chr6 146670150 146670333 -2846704 - B3A SINE B2 -16 182 2 3 1704 398 233 0 0 chr6 146670352 146670425 -2846612 - ID4 SINE ID -1 82 10 3 1704 1176 101 51 0 chr6 146670442 146670620 -2846417 - B2_Mm1a SINE B2 -5 188 2 3 1704 324 290 56 0 chr6 146670620 146670727 -2846310 - B4A SINE B4 -62 230 118 3 1704 22 0 0 0 chr6 146670773 146670795 -2846242 + AT_rich Low_complexity Low_complexity 1 22 0 3 1704 1159 62 7 0 chr6 146670795 146670941 -2846096 - B1_Mus2 SINE Alu 0 147 1 3 1704 1155 83 0 0 chr6 146670958 146671102 -2845935 - B1_Mus1 SINE Alu 0 148 5 3 1704 426 211 28 19 chr6 146671592 146671698 -2845339 + RLTR23 LTR ERV1 324 430 0 3 1704 498 274 70 32 chr6 146671699 146671857 -2845180 - B3A SINE B2 -15 201 38 3 1704 231 114 0 0 chr6 146671947 146671991 -2845046 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1704 1238 34 7 0 chr6 146671991 146672137 -2844900 - B1_Mus2 SINE Alu 0 147 1 4 1704 753 271 189 10 chr6 146672288 146672601 -2844436 + Tigger7 DNA MER2_type 7 375 -2116 4 1704 750 206 14 0 chr6 146672612 146672758 -2844279 - B1F SINE Alu 0 149 2 4 1704 183 42 0 0 chr6 146672764 146672788 -2844249 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1704 266 163 195 11 chr6 146672827 146672914 -2844123 + Tigger7 DNA MER2_type 2330 2432 -59 4 1704 24 32 0 0 chr6 146673588 146673619 -2843418 + GC_rich Low_complexity Low_complexity 1 31 0 4 1704 261 299 27 27 chr6 146674852 146674962 -2842075 - Lx7 LINE L1 -2 7694 7585 4 1704 609 180 60 73 chr6 146676145 146676295 -2840742 - B1_Mur3 SINE Alu 0 149 2 4 1704 1154 62 0 7 chr6 146677336 146677481 -2839556 + B1_Mus2 SINE Alu 3 146 -1 4 1704 1264 149 28 0 chr6 146677513 146677728 -2839309 - URR1A DNA MER1_type 0 226 6 4 1704 245 290 37 74 chr6 146679059 146679167 -2837870 - MIR SINE MIR -76 132 29 4 1704 513 0 0 0 chr6 146680054 146680111 -2836926 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1704 472 309 32 0 chr6 146682509 146682632 -2834405 - RSINE1 SINE B4 -36 129 3 4 1704 477 62 0 0 chr6 146683182 146683247 -2833790 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1704 229 264 140 0 chr6 146683257 146683359 -2833678 - B4 SINE B4 -88 204 90 4 1704 298 303 0 43 chr6 146683660 146683753 -2833284 - PB1D10 SINE Alu -1 116 28 4 1704 225 0 0 0 chr6 146684995 146685020 -2832017 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1704 397 158 53 0 chr6 146685424 146685500 -2831537 - PB1D10 SINE Alu -36 81 2 4 1704 2832 62 3 8 chr6 146686449 146686822 -2830215 - L1_Mus4 LINE L1 0 6636 6266 4 1704 687 275 5 30 chr6 146686936 146687135 -2829902 - B3A SINE B2 0 198 5 4 1704 296 307 0 0 chr6 146687141 146687229 -2829808 - B4 SINE B4 -199 93 6 4 1704 213 186 83 17 chr6 146688180 146688240 -2828797 - PB1D10 SINE Alu 0 117 54 4 1704 1762 10 0 0 chr6 146688967 146689167 -2827870 - L1Md_A LINE L1 0 6582 6383 4 1704 1961 178 119 3 chr6 146689380 146689757 -2827280 - MTC LTR MaLR 0 421 1 4 1704 358 243 73 27 chr6 146689858 146689968 -2827069 - ID_B1 SINE B4 0 224 110 4 1704 258 294 39 19 chr6 146690258 146690362 -2826675 - MIR SINE MIR -61 147 42 4 1704 222 62 0 0 chr6 146690779 146690811 -2826226 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1704 419 247 0 0 chr6 146690856 146690937 -2826100 - B4 SINE B4 -73 219 139 4 1704 392 233 48 0 chr6 146691619 146691722 -2825315 + PB1D7 SINE Alu 1 108 -12 4 1704 483 240 20 0 chr6 146692520 146692620 -2824417 + PB1D10 SINE Alu 6 107 -10 4 1704 1232 28 14 0 chr6 146692785 146692930 -2824107 - B1_Mm SINE Alu 0 147 1 4 1704 515 244 96 0 chr6 146693003 146693118 -2823919 - ID_B1 SINE B4 -15 209 84 4 1704 1181 259 77 12 chr6 146693445 146693769 -2823268 - MTEb LTR MaLR -17 362 18 4 1704 977 135 47 6 chr6 146694356 146694527 -2822510 - B2_Mm2 SINE B2 -14 181 4 4 1704 238 265 40 20 chr6 146694883 146694983 -2822054 + L1MA5 LINE L1 6199 6300 0 4 1704 25 51 0 0 chr6 146695014 146695053 -2821984 + AT_rich Low_complexity Low_complexity 1 39 0 4 1704 646 154 137 8 chr6 146696340 146696464 -2820573 - B1_Mur1 SINE Alu 0 149 10 4 1704 970 263 14 0 chr6 146696525 146696738 -2820299 - B3 SINE B2 0 216 1 4 1704 404 283 78 96 chr6 146697958 146698251 -2818786 + B4A SINE B4 5 292 0 4 1704 663 207 22 29 chr6 146698635 146698774 -2818263 + B1_Mur2 SINE Alu 6 143 -6 4 1704 253 190 0 37 chr6 146698776 146698858 -2818179 + GA-rich Low_complexity Low_complexity 3 81 0 4 1704 582 15 0 0 chr6 146700107 146700174 -2816863 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1704 549 44 0 0 chr6 146700174 146700241 -2816796 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1704 222 105 0 0 chr6 146701411 146701449 -2815588 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1704 26 0 0 0 chr6 146701734 146701760 -2815277 + AT_rich Low_complexity Low_complexity 1 26 0 4 1704 2332 233 111 15 chr6 146703553 146704077 -2812960 + RMER1C Other Other 412 985 -357 4 1704 1763 142 106 0 chr6 146704502 146704813 -2812224 + RMER1C Other Other 998 1341 -1 4 1704 246 128 0 0 chr6 146704884 146704923 -2812114 + (TCC)n Simple_repeat Simple_repeat 2 40 0 4 1704 1457 50 55 0 chr6 146707361 146707521 -2809516 + B2_Mm1a SINE B2 1 160 -33 4 1704 459 0 0 0 chr6 146707521 146707572 -2809465 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 4 1704 1457 50 55 0 chr6 146707572 146707593 -2809444 + B2_Mm1a SINE B2 161 191 -2 4 1704 285 205 0 93 chr6 146707898 146707998 -2809039 - B1F2 SINE Alu -32 117 28 4 1704 747 278 97 10 chr6 146709224 146709533 -2807504 + ORR1E LTR MaLR 22 357 -2 4 1704 246 275 32 21 chr6 146710895 146710988 -2806049 - MER102b DNA MER1_type -159 182 89 4 1704 186 125 0 0 chr6 146711062 146711085 -2805952 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1704 1174 68 0 0 chr6 146711085 146711233 -2805804 - B1_Mus1 SINE Alu 0 148 1 4 1704 186 125 0 0 chr6 146711233 146711241 -2805796 + (T)n Simple_repeat Simple_repeat 1 8 0 4 1704 621 40 0 0 chr6 146712794 146712870 -2804167 + (CGTG)n Simple_repeat Simple_repeat 4 79 0 4 1704 500 228 20 0 chr6 146712891 146712992 -2804045 + B3 SINE B2 2 104 -112 4 1704 24 32 0 0 chr6 146713035 146713066 -2803971 + AT_rich Low_complexity Low_complexity 1 31 0 4 1704 383 244 13 0 chr6 146713615 146713693 -2803344 - B1_Mur3 SINE Alu -70 79 1 4 1704 256 197 239 0 chr6 146713919 146713990 -2803047 + PB1D10 SINE Alu 23 110 -7 4 1704 1270 73 78 11 chr6 146714197 146714358 -2802679 + B2_Mm1a SINE B2 1 162 -31 4 1704 207 0 0 0 chr6 146714358 146714381 -2802656 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 4 1704 1270 73 78 11 chr6 146714381 146714398 -2802639 + B2_Mm1a SINE B2 163 191 -2 4 1704 273 218 286 34 chr6 146714503 146714650 -2802387 - B3A SINE B2 -12 186 3 4 1704 836 244 25 25 chr6 146714910 146715112 -2801925 + ID_B1 SINE B4 5 206 -18 4 1704 315 0 0 0 chr6 146715126 146715161 -2801876 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1704 419 255 0 0 chr6 146716708 146716810 -2800227 + ID_B1 SINE B4 123 224 0 4 1704 700 253 86 6 chr6 146720853 146721028 -2796009 - B3A SINE B2 -9 189 1 4 1704 284 287 0 44 chr6 146721257 146721348 -2795689 + L1MC LINE L1 5559 5645 -2237 4 1704 1018 159 43 5 chr6 146722002 146722211 -2794826 + URR1B DNA MER1_type 7 223 -2 4 1704 261 164 213 0 chr6 146722502 146722563 -2794474 - ID4_ SINE ID -8 75 2 4 1704 799 112 24 16 chr6 146722894 146723021 -2794016 + B1_Mus2 SINE Alu 2 129 -18 4 1704 478 302 116 0 chr6 146723123 146723252 -2793785 - RSINE1 SINE B4 -20 145 2 4 1704 741 180 89 39 chr6 146723280 146723459 -2793578 - B2_Mm2 SINE B2 -6 189 2 4 1704 333 61 20 0 chr6 146723850 146723899 -2793138 - URR1B DNA MER1_type -2 223 174 4 1704 192 77 0 0 chr6 146724401 146724427 -2792610 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1704 575 258 64 31 chr6 146728334 146728524 -2788513 + B3A SINE B2 4 209 -7 4 1704 1225 54 0 0 chr6 146728524 146728671 -2788366 + B1_Mus2 SINE Alu 1 147 0 4 1704 261 83 0 0 chr6 146729379 146729415 -2787622 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1704 1202 55 7 0 chr6 146729416 146729561 -2787476 - B1_Mus2 SINE Alu -1 146 1 4 1704 2848 145 33 30 chr6 146730161 146730652 -2786385 + RLTR20A LTR ERVK 1 492 -49 4 1704 3039 71 71 5 chr6 146731995 146732405 -2784632 + RLTR9B LTR ERVK 1 437 0 4 1704 502 240 62 74 chr6 146732451 146732613 -2784424 + B4A SINE B4 65 224 -68 4 1704 1151 56 0 0 chr6 146732474 146732616 -2784421 + B1_Mus1 SINE Alu 7 148 0 4 1704 5297 154 58 30 chr6 146732830 146734883 -2782154 + MYSERV16_I-int LTR ERVK 1 2077 -249 4 1704 2889 12 0 9 chr6 146734891 146735216 -2781821 + RLTRETN_Mm LTR ERVK 1 322 0 4 1704 42481 21 2 4 chr6 146735216 146740071 -2776966 + MMETn-int LTR ERVK 1 4844 0 4 1704 2645 19 0 0 chr6 146740071 146740382 -2776655 + RLTRETN_Mm LTR ERVK 1 311 -11 4 1704 2159 145 67 11 chr6 146740382 146740815 -2776222 + MYSERV16_I-int LTR ERVK 1870 2326 0 4 1704 3316 133 24 33 chr6 146740815 146741359 -2775678 + RLTR20A LTR ERVK 1 539 -2 4 1704 565 317 25 0 chr6 146741738 146741899 -2775138 - ID_B1 SINE B4 -1 223 59 4 1704 468 219 59 34 chr6 146741935 146742053 -2774984 - ID_B1 SINE B4 -5 219 99 4 1704 305 294 85 46 chr6 146742053 146742086 -2774951 + YREP_Mm Unknown Unknown 182 338 -1474 4 1704 23 0 0 0 chr6 146742405 146742428 -2774609 + AT_rich Low_complexity Low_complexity 1 23 0 4 1704 425 279 194 65 chr6 146742601 146743110 -2773927 - L1_Mur3 LINE L1 -15 5865 5281 4 1704 576 184 311 19 chr6 146743110 146743271 -2773766 - B3 SINE B2 -8 208 1 4 1704 425 271 126 94 chr6 146743271 146743396 -2773641 - L1_Mur3 LINE L1 -600 5280 5157 4 1704 1810 129 6 58 chr6 146743413 146743742 -2773295 + RLTR11B LTR ERVK 142 453 0 4 1704 473 71 14 0 chr6 146745398 146745468 -2771569 + (ATTG)n Simple_repeat Simple_repeat 3 73 0 4 1704 240 222 45 90 chr6 146745692 146745781 -2771256 + MIRb SINE MIR 107 191 -77 4 1704 441 0 0 0 chr6 146745847 146745896 -2771141 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1704 206 338 40 13 chr6 146746513 146746588 -2770449 + MIR SINE MIR 128 204 -58 4 1704 1016 236 0 10 chr6 146746592 146746789 -2770248 + B3 SINE B2 1 195 -21 4 1704 495 0 0 0 chr6 146746809 146746864 -2770173 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1704 279 246 0 58 chr6 146746874 146746943 -2770094 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 4 1704 311 280 5 8 chr6 146747039 146747142 -2769895 + MIRc SINE MIR 78 182 -94 5 1704 794 257 148 23 chr6 146747570 146747861 -2769176 - ORR1E LTR MaLR -6 353 1 5 1704 401 277 63 44 chr6 146748915 146749060 -2767977 + B1F SINE Alu 5 148 -1 5 1704 721 200 145 16 chr6 146749202 146749395 -2767642 + B4 SINE B4 1 218 -74 5 1704 456 273 35 14 chr6 146749483 146749628 -2767409 - B1F1 SINE Alu 0 149 2 5 1704 509 269 18 30 chr6 146750019 146750184 -2766853 - RSINE1 SINE B4 0 165 3 5 1704 389 255 0 73 chr6 146750480 146750590 -2766447 + PB1D10 SINE Alu 16 117 0 5 1704 818 154 4 4 chr6 146750628 146750911 -2766126 + (CA)n Simple_repeat Simple_repeat 1 283 0 5 1704 212 286 81 23 chr6 146752654 146752740 -2764297 - PB1D7 SINE Alu -28 92 2 5 1704 269 212 167 0 chr6 146753019 146753085 -2763952 - ID2 SINE ID -2 81 5 5 1704 253 43 21 42 chr6 146754335 146754383 -2762654 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1704 290 250 53 0 chr6 146754546 146754622 -2762415 - ID4 SINE ID -3 80 1 5 1704 342 196 7 200 chr6 146754696 146754836 -2762201 - B1F1 SINE Alu 0 149 37 5 1704 626 276 15 2 chr6 146754764 146754921 -2762116 - MTEa LTR MaLR -212 167 1 5 1704 822 171 63 29 chr6 146755408 146755583 -2761454 + B3A SINE B2 2 182 -16 5 1704 285 75 0 0 chr6 146755595 146755635 -2761402 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1704 647 262 43 75 chr6 146755676 146755710 -2761327 - B3A SINE B2 -13 185 154 5 1704 216 0 0 0 chr6 146755710 146755734 -2761303 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1704 647 262 43 75 chr6 146755734 146755885 -2761152 - B3A SINE B2 -45 153 6 5 1704 995 116 0 10 chr6 146756760 146757048 -2759989 + (ATGGTG)n Simple_repeat Simple_repeat 1 285 0 5 1704 660 93 0 0 chr6 146757070 146757167 -2759870 + (ATG)n Simple_repeat Simple_repeat 2 98 0 5 1704 497 260 10 0 chr6 146757254 146757358 -2759679 - PB1D7 SINE Alu -8 112 8 5 1704 328 212 248 56 chr6 146757358 146757379 -2759658 - ID_B1 SINE B4 -8 216 68 5 1704 567 178 0 0 chr6 146757846 146757898 -2759139 + polypyrimidine Low_complexity Low_complexity 67 118 0 5 1704 1045 106 0 16 chr6 146757898 146758080 -2758957 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 5 1704 567 178 0 0 chr6 146758080 146758145 -2758892 + polypyrimidine Low_complexity Low_complexity 2 66 0 5 1704 394 221 65 37 chr6 146758482 146758590 -2758447 + PB1D10 SINE Alu 6 116 -1 5 1704 712 270 157 0 chr6 146758994 146759179 -2757858 + ID_B1 SINE B4 11 224 0 5 1704 712 176 82 62 chr6 146759878 146760072 -2756965 - B3A SINE B2 0 198 1 5 1704 746 226 0 21 chr6 146760120 146760135 -2756902 - RSINE1 SINE B4 -28 137 125 5 1704 540 0 0 0 chr6 146760135 146760195 -2756842 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1704 746 226 0 21 chr6 146760195 146760319 -2756718 - RSINE1 SINE B4 -41 124 1 5 1704 732 253 88 0 chr6 146760492 146760686 -2756351 + ID_B1 SINE B4 5 215 -9 5 1704 22 0 0 0 chr6 146760811 146760833 -2756204 + AT_rich Low_complexity Low_complexity 1 22 0 5 1704 943 228 26 0 chr6 146760887 146761076 -2755961 + B3 SINE B2 5 198 -18 5 1704 210 71 0 0 chr6 146761099 146761127 -2755910 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1704 227 268 15 30 chr6 146762661 146762792 -2754245 + (CATA)n Simple_repeat Simple_repeat 4 132 0 5 1704 4680 178 16 25 chr6 146763130 146763427 -2753610 - MurERV4-int LTR ERVK -2860 2400 2104 5 1704 3516 28 2 0 chr6 146763427 146763822 -2753215 - MTA_Mm LTR MaLR 0 396 1 5 1704 4680 178 16 25 chr6 146763822 146763890 -2753147 - MurERV4-int LTR ERVK -3157 2103 2031 5 1704 243 0 0 0 chr6 146763890 146763917 -2753120 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 1704 4680 178 16 25 chr6 146763917 146764388 -2752649 - MurERV4-int LTR ERVK -3230 2030 1571 5 1704 1215 238 131 62 chr6 146764571 146765130 -2751907 - RMER13A LTR ERVK -201 659 2 5 1704 1379 200 84 57 chr6 146765141 146765537 -2751500 - RMER4B LTR ERVK -12 573 123 5 1704 2758 102 99 27 chr6 146765537 146765980 -2751057 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1704 1379 205 83 74 chr6 146765980 146766059 -2750978 - RMER4B LTR ERVK -463 122 48 5 1704 1454 70 16 0 chr6 146766059 146766244 -2750793 - B2_Mm2 SINE B2 -7 188 1 5 1704 1379 205 83 74 chr6 146766244 146766277 -2750760 - RMER4B LTR ERVK -538 47 17 5 1704 683 248 204 4 chr6 146766491 146766666 -2750371 + B4A SINE B4 10 222 -70 5 1704 369 0 0 0 chr6 146766666 146766707 -2750330 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1704 683 248 204 4 chr6 146766707 146766762 -2750275 + B4A SINE B4 223 285 -7 5 1704 449 257 284 27 chr6 146766899 146767047 -2749990 - B3 SINE B2 -5 211 26 5 1704 416 200 0 0 chr6 146767142 146767217 -2749820 + ID2 SINE ID 1 75 -8 5 1704 532 304 23 45 chr6 146767481 146767657 -2749380 - ORR1E LTR MaLR 0 359 188 5 1704 1197 69 0 0 chr6 146767661 146767821 -2749216 + (GGGA)n Simple_repeat Simple_repeat 3 162 0 5 1704 198 103 0 0 chr6 146767887 146767916 -2749121 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 5 1704 240 111 0 0 chr6 146767979 146768015 -2749022 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 5 1704 649 241 75 45 chr6 146768308 146768508 -2748529 + B3 SINE B2 9 214 -2 5 1704 460 165 13 0 chr6 146768552 146768631 -2748406 - B1_Mur1 SINE Alu -5 144 65 5 1704 230 326 0 0 chr6 146768674 146768723 -2748314 + B1F SINE Alu 2 50 -99 5 1704 269 259 153 0 chr6 146768822 146768907 -2748130 + B3A SINE B2 1 98 -100 5 1704 400 257 9 71 chr6 146769423 146769536 -2747501 + PB1D9 SINE Alu 12 117 -3 5 1704 751 206 28 21 chr6 146769619 146769763 -2747274 - B1_Mur2 SINE Alu 0 149 5 5 1704 396 59 0 0 chr6 146769796 146769847 -2747190 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1704 580 283 7 0 chr6 146769867 146770005 -2747032 - B3A SINE B2 -59 139 1 5 1704 250 154 3 0 chr6 146770010 146770070 -2746967 - PB1D10 SINE Alu -5 144 79 5 1704 424 305 34 34 chr6 146770133 146770279 -2746758 + ID_B1 SINE B4 79 224 0 5 1704 238 267 0 19 chr6 146770279 146770382 -2746655 + GA-rich Low_complexity Low_complexity 2 102 0 5 1704 373 259 35 35 chr6 146771268 146771384 -2745653 + PB1D10 SINE Alu 1 116 -1 5 1704 216 291 76 0 chr6 146771483 146771562 -2745475 - PB1D9 SINE Alu -34 86 2 5 1704 600 14 0 0 chr6 146771825 146771894 -2745143 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1704 1097 75 0 0 chr6 146771894 146772028 -2745009 - B1_Mus1 SINE Alu -13 135 2 5 1704 1969 81 7 75 chr6 146772028 146772334 -2744703 - ORR1A2 LTR MaLR -41 286 2 5 1704 700 261 0 0 chr6 146772746 146772884 -2744153 + ID_B1 SINE B4 87 224 0 5 1704 201 39 0 0 chr6 146772884 146772910 -2744127 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1704 235 186 28 28 chr6 146772916 146772988 -2744049 + GA-rich Low_complexity Low_complexity 4 75 0 5 1704 373 164 33 0 chr6 146773001 146773062 -2743975 + ID4_ SINE ID 8 70 -13 5 1704 457 246 95 32 chr6 146773074 146773200 -2743837 + B1_Mus2 SINE Alu 14 147 0 5 1704 309 353 89 45 chr6 146773911 146774068 -2742969 + RSINE1 SINE B4 2 165 0 5 1704 201 147 0 0 chr6 146774072 146774106 -2742931 + (TATG)n Simple_repeat Simple_repeat 2 35 0 5 1704 492 121 59 29 chr6 146774100 146774270 -2742767 + (CATA)n Simple_repeat Simple_repeat 2 176 0 5 1704 374 211 15 22 chr6 146774298 146774434 -2742603 + (CATA)n Simple_repeat Simple_repeat 4 138 0 5 1704 334 243 186 62 chr6 146774465 146774610 -2742427 + RSINE1 SINE B4 3 165 0 5 1704 390 245 59 0 chr6 146774970 146775072 -2741965 + PB1D10 SINE Alu 9 116 -1 5 1704 698 132 38 0 chr6 146775079 146775185 -2741852 + B1_Mus1 SINE Alu 39 148 0 5 1704 790 245 80 0 chr6 146775218 146775418 -2741619 + B3 SINE B2 1 216 0 5 1704 216 200 0 0 chr6 146775927 146775972 -2741065 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1704 339 227 80 0 chr6 146776011 146776099 -2740938 - B3A SINE B2 -21 177 83 5 1704 244 235 90 45 chr6 146776866 146776955 -2740082 + MIR SINE MIR 71 163 -99 5 1704 677 211 24 0 chr6 146776970 146777093 -2739944 - ID_B1 SINE B4 -12 212 87 5 1704 305 258 94 62 chr6 146777312 146777440 -2739597 + ID_B1 SINE B4 91 222 -2 5 1704 245 215 45 30 chr6 146777465 146777532 -2739505 + ID4 SINE ID 2 69 -14 5 1704 1026 0 0 0 chr6 146777569 146777683 -2739354 + (GGA)n Simple_repeat Simple_repeat 2 115 0 5 1704 234 259 0 25 chr6 146777873 146777992 -2739045 + (CA)n Simple_repeat Simple_repeat 2 117 0 5 1704 676 202 23 0 chr6 146778451 146778580 -2738457 + B1F1 SINE Alu 11 142 -7 5 1704 238 271 56 104 chr6 146778462 146778590 -2738447 - YREP_Mm Unknown Unknown -1517 295 169 5 1704 3887 82 9 4 chr6 146778590 146779117 -2737920 + L1_Mus3 LINE L1 6097 6626 -12 5 1704 238 271 56 104 chr6 146779117 146779132 -2737905 - YREP_Mm Unknown Unknown -1644 168 159 5 1704 186 43 0 0 chr6 146779202 146779225 -2737812 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1704 1216 49 0 0 chr6 146779238 146779380 -2737657 - B1_Mm SINE Alu -5 142 1 5 1704 501 215 236 11 chr6 146779399 146779573 -2737464 - B3 SINE B2 -3 213 1 5 1704 252 0 0 0 chr6 146779762 146779790 -2737247 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1704 672 157 353 0 chr6 146779811 146779964 -2737073 + B3 SINE B2 5 211 -5 5 1704 552 281 180 52 chr6 146780045 146780372 -2736665 - MTE2a LTR MaLR -2 377 9 5 1704 785 169 254 6 chr6 146780378 146780551 -2736486 + B3 SINE B2 1 216 0 5 1704 694 240 94 0 chr6 146780575 146780746 -2736291 - ID_B1 SINE B4 -22 202 16 5 1704 711 171 233 6 chr6 146780792 146780968 -2736069 - B3 SINE B2 0 216 1 5 1704 972 129 7 26 chr6 146781528 146781679 -2735358 - B1_Mus1 SINE Alu 0 148 1 5 1704 680 241 119 15 chr6 146781830 146782032 -2735005 + ID_B1 SINE B4 2 224 0 5 1704 450 0 0 0 chr6 146782086 146782136 -2734901 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1704 741 216 144 0 chr6 146782136 146782289 -2734748 - B3 SINE B2 -28 188 14 6 1704 438 234 163 8 chr6 146782707 146782836 -2734201 + B1F1 SINE Alu 1 149 0 6 1704 234 0 0 0 chr6 146783258 146783284 -2733753 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1704 532 181 80 16 chr6 146783288 146783432 -2733605 - B1F SINE Alu 0 149 1 6 1704 210 340 39 29 chr6 146783762 146783865 -2733172 + B1_Mm SINE Alu 7 110 -37 6 1704 395 219 64 98 chr6 146784033 146784142 -2732895 + PB1D7 SINE Alu 21 127 0 6 1704 21 89 0 0 chr6 146784701 146784757 -2732280 + AT_rich Low_complexity Low_complexity 1 56 0 6 1704 22 0 0 0 chr6 146784970 146784992 -2732045 + AT_rich Low_complexity Low_complexity 1 22 0 6 1704 522 0 0 0 chr6 146785258 146785316 -2731721 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1704 502 197 12 10 chr6 146785318 146785434 -2731603 - B1F SINE Alu -7 143 26 6 1704 376 303 77 73 chr6 146785570 146785830 -2731207 + RLTR12B LTR ERVK 254 514 -14 6 1704 661 283 84 18 chr6 146785840 146786158 -2730879 - L1MB2 LINE L1 -190 5999 5659 6 1704 221 83 28 0 chr6 146786192 146786228 -2730809 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1704 527 140 8 23 chr6 146786228 146786360 -2730677 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 6 1704 2155 111 11 79 chr6 146786455 146786808 -2730229 + ORR1A4 LTR MaLR 1 329 0 6 1704 323 182 178 33 chr6 146786870 146787002 -2730035 - L1MB2 LINE L1 -717 5466 5319 6 1704 1337 162 5 0 chr6 146787015 146787219 -2729818 - B3 SINE B2 -10 206 2 6 1704 24 0 0 0 chr6 146787222 146787246 -2729791 + AT_rich Low_complexity Low_complexity 1 24 0 6 1704 268 237 0 0 chr6 146787498 146787557 -2729480 - ID_B1 SINE B4 -21 203 145 6 1704 233 280 202 39 chr6 146787502 146787606 -2729431 - B1F SINE Alu -28 121 1 6 1704 331 241 172 0 chr6 146787704 146787791 -2729246 + PB1D10 SINE Alu 2 103 -14 6 1704 411 265 92 35 chr6 146788026 146788167 -2728870 + PB1D10 SINE Alu 1 149 0 6 1704 198 71 0 0 chr6 146788964 146788992 -2728045 + (CCA)n Simple_repeat Simple_repeat 1 28 0 6 1704 351 0 0 0 chr6 146788998 146789037 -2728000 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 6 1704 639 0 0 0 chr6 146789340 146789411 -2727626 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 6 1704 255 79 0 0 chr6 146789474 146789512 -2727525 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1704 736 253 56 125 chr6 146789527 146789848 -2727189 + MTE2a LTR MaLR 5 303 -76 6 1704 309 257 0 0 chr6 146789827 146789897 -2727140 + B1F1 SINE Alu 79 148 -1 6 1704 182 289 87 58 chr6 146791543 146791646 -2725391 - L3 LINE CR1 -2232 2257 2152 6 1704 848 239 10 39 chr6 146791843 146792048 -2724989 - ID_B1 SINE B4 -21 203 5 6 1704 595 110 31 0 chr6 146792599 146792726 -2724311 + (TCTG)n Simple_repeat Simple_repeat 2 132 0 6 1704 296 217 116 0 chr6 146792827 146792896 -2724141 + PB1D9 SINE Alu 37 113 -7 6 1704 595 217 31 8 chr6 146792928 146793058 -2723979 + ID_B1 SINE B4 91 223 -1 6 1704 689 34 11 0 chr6 146793397 146793485 -2723552 + (TC)n Simple_repeat Simple_repeat 1 89 0 6 1704 416 190 12 12 chr6 146794067 146794147 -2722890 + RSINE1 SINE B4 4 83 -82 6 1704 487 219 91 42 chr6 146794707 146794850 -2722187 + MER82 DNA MER2_type 79 228 -425 6 1704 547 270 16 0 chr6 146794823 146794949 -2722088 - ID_B1 SINE B4 -25 199 72 6 1704 890 93 273 0 chr6 146796293 146796443 -2720594 - B2_Mm2 SINE B2 -3 192 2 6 1704 390 296 69 34 chr6 146796669 146796687 -2720350 - B2_Mm2 SINE B2 -14 181 163 6 1704 252 0 0 0 chr6 146796687 146796715 -2720322 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1704 620 286 52 0 chr6 146796715 146796871 -2720166 - B3 SINE B2 -33 162 1 6 1704 1450 61 0 22 chr6 146797168 146797353 -2719684 + B2_Mm2 SINE B2 1 181 -14 6 1704 205 297 0 30 chr6 146797822 146797888 -2719149 - MIRb SINE MIR -146 122 59 6 1704 1170 55 7 0 chr6 146798076 146798222 -2718815 + B1_Mus1 SINE Alu 2 148 0 6 1704 282 292 106 72 chr6 146799259 146799466 -2717571 + MIRc SINE MIR 40 253 -15 6 1704 588 192 47 55 chr6 146799663 146799790 -2717247 - RSINE1 SINE B4 -29 136 11 6 1704 475 184 22 33 chr6 146799812 146799902 -2717135 - B4 SINE B4 -69 223 135 6 1704 413 235 171 17 chr6 146799979 146800096 -2716941 - B1F1 SINE Alu -3 146 12 6 1704 321 239 0 29 chr6 146800253 146800322 -2716715 + B3A SINE B2 1 67 -131 6 1704 212 164 127 0 chr6 146800343 146800398 -2716639 - B1_Mur4 SINE Alu 0 150 89 6 1704 338 307 53 91 chr6 146800411 146800619 -2716418 + L1M5 LINE L1 5566 5765 -359 6 1705 802 129 9 0 chr6 146801596 146801712 -2715325 - B1_Mur1 SINE Alu -10 139 23 6 1705 428 206 31 145 chr6 146801712 146801755 -2715282 - B4 SINE B4 -76 216 76 6 1705 752 232 226 10 chr6 146801772 146802068 -2714969 - ORR1C1 LTR MaLR -16 362 3 6 1705 528 236 94 10 chr6 146802462 146802599 -2714438 + ID_B1 SINE B4 71 216 -8 6 1705 836 247 141 12 chr6 146802756 146802998 -2714039 + B4A SINE B4 16 288 -4 6 1705 405 0 0 0 chr6 146803006 146803051 -2713986 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1705 429 234 224 28 chr6 146803310 146803556 -2713481 + ORR1E LTR MaLR 58 377 -2 6 1705 987 226 24 99 chr6 146803556 146803850 -2713187 - MTE2b LTR MaLR 0 379 108 6 1705 237 106 234 0 chr6 146803935 146803982 -2713055 - MTE2a LTR MaLR -214 165 108 6 1705 450 270 40 0 chr6 146804028 146804154 -2712883 - MTE2a LTR MaLR -227 152 22 6 1705 326 286 0 56 chr6 146804684 146804773 -2712264 + ID_B1 SINE B4 86 169 -55 6 1705 270 306 50 67 chr6 146804773 146804799 -2712238 + PB1D10 SINE Alu 5 117 0 6 1705 500 194 8 0 chr6 146805649 146805773 -2711264 + GA-rich Low_complexity Low_complexity 2 126 0 6 1705 312 326 39 17 chr6 146806068 146806246 -2710791 - L1MC4 LINE L1 -105 7937 7756 6 1705 666 217 112 0 chr6 146806341 146806484 -2710553 - B3 SINE B2 -8 208 50 6 1705 1231 75 69 0 chr6 146806500 146806673 -2710364 - B2_Mm2 SINE B2 -8 187 3 6 1705 470 198 18 0 chr6 146806676 146806787 -2710250 + (TATG)n Simple_repeat Simple_repeat 2 114 0 6 1705 353 252 22 144 chr6 146806937 146807076 -2709961 - B1F SINE Alu -27 122 1 6 1705 310 229 82 0 chr6 146807936 146807997 -2709040 + ID4_ SINE ID 17 82 -1 6 1705 821 228 22 39 chr6 146808019 146808197 -2708840 - B3 SINE B2 -13 203 29 6 1705 300 208 81 27 chr6 146808199 146808273 -2708764 + ID4 SINE ID 3 80 -3 6 1705 450 0 0 0 chr6 146808808 146808858 -2708179 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1705 377 188 214 20 chr6 146808878 146808976 -2708061 - B3A SINE B2 -81 117 1 6 1705 684 307 55 10 chr6 146808977 146809178 -2707859 - ID_B1 SINE B4 -9 215 6 6 1705 393 250 38 9 chr6 146809697 146809802 -2707235 - PB1D10 SINE Alu -9 108 1 6 1705 267 304 18 81 chr6 146809802 146809853 -2707184 - B4A SINE B4 -206 86 43 6 1705 501 17 0 0 chr6 146809956 146810014 -2707023 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1705 328 168 43 17 chr6 146810948 146811063 -2705974 + (TATG)n Simple_repeat Simple_repeat 1 118 0 6 1705 432 280 78 20 chr6 146811072 146811225 -2705812 - RSINE1 SINE B4 0 165 4 6 1705 604 243 7 28 chr6 146811241 146811385 -2705652 - B1F SINE Alu 0 149 9 6 1705 493 194 0 104 chr6 146812001 146812016 -2705021 + MT2B LTR ERVL 155 157 -444 6 1705 939 150 14 0 chr6 146812016 146812156 -2704881 + B1_Mur3 SINE Alu 3 144 -5 6 1705 282 56 0 0 chr6 146812158 146812194 -2704843 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1705 869 227 62 0 chr6 146812209 146812385 -2704652 - B3 SINE B2 -29 187 1 6 1705 1194 110 0 0 chr6 146812784 146813067 -2703970 + (CA)n Simple_repeat Simple_repeat 1 283 0 6 1705 217 169 13 66 chr6 146813091 146813147 -2703890 + A-rich Low_complexity Low_complexity 1 56 0 6 1705 1241 41 0 7 chr6 146813147 146813295 -2703742 + B1_Mus2 SINE Alu 1 147 0 6 1705 217 169 13 66 chr6 146813295 146813314 -2703723 + A-rich Low_complexity Low_complexity 57 72 0 6 1705 1516 135 5 0 chr6 146813362 146813584 -2703453 - URR1A DNA MER1_type -1 225 3 6 1705 489 255 95 20 chr6 146813868 146814016 -2703021 + ID_B1 SINE B4 57 215 -9 6 1705 625 246 137 16 chr6 146814311 146814501 -2702536 - B3 SINE B2 0 216 4 6 1705 424 280 18 77 chr6 146814600 146814770 -2702267 - B4A SINE B4 0 292 133 6 1705 294 73 0 0 chr6 146814796 146814837 -2702200 + (TATG)n Simple_repeat Simple_repeat 4 44 0 6 1705 592 214 29 0 chr6 146814837 146814940 -2702097 - PB1D9 SINE Alu -8 112 7 6 1705 2004 120 10 10 chr6 146815325 146815661 -2701376 - ORR1A2 LTR MaLR 0 327 1 6 1705 436 185 0 52 chr6 146815661 146815729 -2701308 - ORR1A2 LTR MaLR -264 63 1 6 1705 208 184 20 0 chr6 146816520 146816569 -2700468 + T-rich Low_complexity Low_complexity 2 51 0 6 1705 402 256 44 0 chr6 146816829 146816919 -2700118 + B1_Mur2 SINE Alu 4 97 -52 6 1705 1259 62 0 0 chr6 146817074 146817234 -2699803 + B2_Mm2 SINE B2 3 162 -33 6 1705 295 204 0 0 chr6 146817580 146817634 -2699403 + B1_Mur4 SINE Alu 3 56 -94 6 1705 221 273 45 0 chr6 146817587 146817653 -2699384 + ID_B1 SINE B4 90 158 -66 6 1705 432 284 0 0 chr6 146817655 146817789 -2699248 + (CAGG)n Simple_repeat Simple_repeat 2 135 0 7 1705 779 118 0 0 chr6 146817791 146817901 -2699136 + B1_Mur4 SINE Alu 41 150 0 7 1705 762 11 0 0 chr6 146818065 146818152 -2698885 + (TTCC)n Simple_repeat Simple_repeat 3 89 0 7 1705 774 107 122 8 chr6 146818152 146818275 -2698762 - B1_Mur3 SINE Alu -11 138 2 7 1705 308 330 10 41 chr6 146818280 146818378 -2698659 + B4A SINE B4 27 121 -171 7 1705 3376 122 18 29 chr6 146818467 146819022 -2698015 + RMER15 LTR ERVL 27 575 0 7 1705 623 99 22 0 chr6 146819112 146819203 -2697834 + RLTR28B LTR ERVL 12 104 -377 7 1705 288 0 0 0 chr6 146819203 146819235 -2697802 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1705 405 253 23 0 chr6 146819989 146820076 -2696961 - PB1D10 SINE Alu -15 102 14 7 1705 202 238 0 0 chr6 146820417 146820459 -2696578 + (CATA)n Simple_repeat Simple_repeat 3 44 0 7 1705 283 200 14 58 chr6 146820580 146820649 -2696388 + MLT1N2 LTR MaLR 494 559 -3 7 1705 895 236 59 0 chr6 146820786 146820989 -2696048 + ID_B1 SINE B4 1 215 -9 7 1705 509 254 78 50 chr6 146821274 146821415 -2695622 - B1F1 SINE Alu -1 148 4 7 1705 249 232 0 0 chr6 146821657 146821726 -2695311 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 1705 537 312 47 68 chr6 146821790 146822024 -2695013 - B4 SINE B4 -63 229 1 7 1705 1317 86 0 11 chr6 146822425 146822602 -2694435 - B2_Mm2 SINE B2 -20 175 1 7 1705 272 211 167 10 chr6 146823279 146823375 -2693662 + MIRc SINE MIR 7 117 -151 7 1705 1304 264 28 55 chr6 146823472 146823833 -2693204 + MTEa LTR MaLR 3 353 -26 7 1705 294 29 0 0 chr6 146824087 146824122 -2692915 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 1705 307 318 70 30 chr6 146824354 146824555 -2692482 + LTR16A LTR ERVL 227 435 -16 7 1705 672 259 9 85 chr6 146824691 146824902 -2692135 + B3A SINE B2 3 197 -1 7 1705 720 35 0 0 chr6 146825035 146825122 -2691915 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 7 1705 1045 197 21 0 chr6 146825474 146825667 -2691370 - B3 SINE B2 -19 197 1 7 1705 407 268 322 25 chr6 146826650 146826880 -2690157 + MLT1B LTR MaLR 41 339 -51 7 1705 432 271 26 32 chr6 146827008 146827137 -2689900 + B1F SINE Alu 1 122 -27 7 1705 269 280 45 99 chr6 146827137 146827248 -2689789 - MER45C DNA Tip100 -847 106 2 7 1705 333 203 50 39 chr6 146827249 146827353 -2689684 + MIRb SINE MIR 117 218 -44 7 1705 450 0 0 0 chr6 146828262 146828312 -2688725 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1705 780 189 0 0 chr6 146829609 146829736 -2687301 + RSINE1 SINE B4 6 132 -33 7 1705 228 320 0 0 chr6 146829825 146829925 -2687112 + G-rich Low_complexity Low_complexity 45 144 0 7 1705 427 190 112 22 chr6 146829945 146830049 -2686988 + B1F2 SINE Alu 42 147 0 7 1705 754 204 0 0 chr6 146830093 146830225 -2686812 - B1_Mus2 SINE Alu -7 140 9 7 1705 360 286 133 0 chr6 146831611 146831709 -2685328 - PB1 SINE Alu -8 119 9 7 1705 454 255 40 131 chr6 146832426 146832602 -2684435 + B3A SINE B2 16 175 -20 7 1705 862 196 85 0 chr6 146833098 146833297 -2683740 - B3 SINE B2 0 216 1 7 1705 291 157 0 0 chr6 146833798 146833849 -2683188 + G-rich Low_complexity Low_complexity 1 51 0 7 1705 552 147 112 0 chr6 146834076 146834192 -2682845 + B1F SINE Alu 12 140 -9 7 1705 701 158 112 8 chr6 146834202 146834336 -2682701 + B1_Mur2 SINE Alu 2 149 0 7 1705 851 164 7 0 chr6 146834413 146834553 -2682484 - B1_Mus1 SINE Alu -2 146 6 7 1705 468 254 32 16 chr6 146835474 146835598 -2681439 + ID_B1 SINE B4 94 219 -5 7 1705 236 341 0 12 chr6 146836013 146836096 -2680941 + B3A SINE B2 1 82 -116 7 1705 379 265 49 0 chr6 146836174 146836276 -2680761 + B1_Mus2 SINE Alu 1 107 -40 7 1705 21 36 0 0 chr6 146836302 146836330 -2680707 + AT_rich Low_complexity Low_complexity 1 28 0 7 1705 244 282 111 14 chr6 146836340 146836412 -2680625 + PB1D10 SINE Alu 2 80 -37 7 1705 554 264 28 0 chr6 146838811 146838955 -2678082 - B1_Mur2 SINE Alu -1 148 1 7 1705 284 318 0 9 chr6 146839707 146839818 -2677219 - PB1D10 SINE Alu -6 111 2 7 1705 246 62 0 0 chr6 146840141 146840173 -2676864 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1705 614 224 178 11 chr6 146840308 146840493 -2676544 - B3 SINE B2 0 216 1 7 1705 435 182 242 0 chr6 146840521 146840620 -2676417 + RSINE1 SINE B4 3 125 -40 7 1705 26 0 0 0 chr6 146841290 146841316 -2675721 + AT_rich Low_complexity Low_complexity 1 26 0 7 1705 413 281 162 7 chr6 146841385 146841539 -2675498 - B4A SINE B4 -113 179 2 7 1705 693 185 58 29 chr6 146841607 146841746 -2675291 - B1_Mur4 SINE Alu -7 143 1 7 1705 739 220 26 27 chr6 146841753 146841927 -2675110 - B3 SINE B2 0 216 43 7 1705 339 246 131 66 chr6 146843039 146843161 -2673876 + Lx8 LINE L1 7153 7282 -191 7 1705 208 216 0 47 chr6 146843166 146843273 -2673764 + (TA)n Simple_repeat Simple_repeat 2 103 0 7 1705 319 120 0 0 chr6 146843353 146843403 -2673634 + Lx8 LINE L1 7423 7472 -1 7 1705 4513 2 0 0 chr6 146843688 146844176 -2672861 - L1Md_A LINE L1 0 6582 6095 7 1705 2463 86 12 3 chr6 146844262 146844600 -2672437 + L1_Mur2 LINE L1 5512 5852 -25 7 1705 29 47 0 0 chr6 146845032 146845075 -2671962 + AT_rich Low_complexity Low_complexity 1 43 0 7 1705 297 276 169 17 chr6 146845692 146845908 -2671129 + MIR SINE MIR 8 268 0 7 1705 303 365 42 0 chr6 146846224 146846391 -2670646 - MIR SINE MIR -3 259 86 7 1705 420 320 118 43 chr6 146846553 146846808 -2670229 + B4A SINE B4 1 274 -18 7 1705 627 266 85 0 chr6 146848226 146848414 -2668623 + MER44D DNA MER2_type 10 213 -492 7 1705 186 43 0 0 chr6 146849327 146849350 -2667687 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1705 441 279 76 27 chr6 146849645 146849829 -2667208 + MER20 DNA MER1_type 1 193 -26 7 1705 899 222 23 0 chr6 146850502 146850673 -2666364 + B3A SINE B2 1 175 -23 7 1705 1531 59 0 5 chr6 146851151 146851339 -2665698 - B2_Mm2 SINE B2 -8 187 1 7 1705 913 202 35 17 chr6 146851434 146851666 -2665371 - BGLII_B LTR ERVK 0 441 206 7 1705 401 207 0 0 chr6 146851637 146851719 -2665318 - BGLII_A LTR ERVK -363 82 1 7 1705 526 226 93 82 chr6 146851886 146852069 -2664968 - B3A SINE B2 0 198 14 7 1705 186 265 119 12 chr6 146852993 146853077 -2663960 + MIRb SINE MIR 106 198 -70 7 1705 219 69 0 0 chr6 146853200 146853229 -2663808 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 7 1705 879 224 11 0 chr6 146853859 146854033 -2663004 - B3 SINE B2 0 216 41 7 1705 277 60 120 0 chr6 146855378 146855428 -2661609 + Lx9 LINE L1 7582 7637 -7 7 1705 674 105 9 0 chr6 146856880 146856985 -2660052 + (TCTA)n Simple_repeat Simple_repeat 3 108 0 7 1705 417 283 58 29 chr6 146857095 146857266 -2659771 - MTE2b LTR MaLR 0 379 204 7 1705 359 248 50 17 chr6 146857296 146857415 -2659622 - MTE2b LTR MaLR -236 123 1 7 1705 189 74 0 0 chr6 146857792 146857819 -2659218 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1705 180 0 0 0 chr6 146859352 146859372 -2657665 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 1705 570 193 290 18 chr6 146859379 146859548 -2657489 - B3 SINE B2 0 216 2 7 1705 410 147 0 0 chr6 146860011 146860086 -2656951 - MER31A LTR ERV1 -409 76 2 7 1705 284 70 23 0 chr6 146860825 146860868 -2656169 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 7 1705 229 262 94 28 chr6 146861927 146862033 -2655004 + PB1D10 SINE Alu 5 117 0 7 1705 664 153 88 8 chr6 146863784 146863795 -2653242 - B1_Mus1 SINE Alu -1 147 137 7 1705 222 37 0 0 chr6 146863795 146863822 -2653215 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 1705 664 161 83 7 chr6 146863822 146863945 -2653092 - B1_Mus1 SINE Alu -12 136 2 7 1705 678 174 63 28 chr6 146864190 146864332 -2652705 + B1_Mur4 SINE Alu 3 149 -1 7 1705 180 125 0 0 chr6 146864887 146864919 -2652118 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1705 288 0 0 0 chr6 146865290 146865322 -2651715 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1705 789 267 144 12 chr6 146865332 146865575 -2651462 - B4A SINE B4 -16 276 2 7 1705 192 125 0 0 chr6 146866416 146866448 -2650589 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 7 1705 203 162 0 0 chr6 146866587 146866624 -2650413 + (TTG)n Simple_repeat Simple_repeat 2 38 0 7 1705 355 264 36 45 chr6 146866638 146866749 -2650288 - PB1D7 SINE Alu -6 114 5 7 1705 38954 39 0 3 chr6 146867348 146873583 -2643454 - L1Md_T LINE L1 0 6585 271 7 1705 1331 280 209 46 chr6 146873581 146874316 -2642721 - Lx8 LINE L1 -445 7028 6174 7 1705 315 224 0 0 chr6 146874318 146874394 -2642643 + (TG)n Simple_repeat Simple_repeat 2 77 0 7 1705 635 236 118 0 chr6 146874670 146874848 -2642189 - Lx8 LINE L1 -1 5846 5648 7 1705 22 35 0 0 chr6 146875703 146875732 -2641305 + AT_rich Low_complexity Low_complexity 1 29 0 7 1705 400 200 33 0 chr6 146875781 146875871 -2641166 - RSINE1 SINE B4 -61 104 12 7 1705 612 0 0 0 chr6 146877167 146877235 -2639802 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1705 287 290 73 0 chr6 146877715 146877839 -2639198 - ID_B1 SINE B4 -10 214 82 7 1705 1051 166 114 10 chr6 146878709 146878910 -2638127 + URR1A DNA MER1_type 1 222 -4 7 1705 252 0 0 0 chr6 146879266 146879294 -2637743 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1705 414 0 0 0 chr6 146879574 146879620 -2637417 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 1705 285 29 0 0 chr6 146880213 146880247 -2636790 + (TATG)n Simple_repeat Simple_repeat 4 37 0 8 1705 189 107 0 0 chr6 146880254 146880282 -2636755 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1705 712 221 43 0 chr6 146880282 146880422 -2636615 - B1_Mur2 SINE Alu -3 146 1 8 1705 782 170 148 5 chr6 146880601 146880790 -2636247 - B3 SINE B2 0 216 1 8 1705 265 306 157 0 chr6 146882367 146882514 -2634523 + MIRb SINE MIR 32 201 -67 8 1705 2028 139 20 0 chr6 146882720 146883021 -2634016 - Lx4A LINE L1 -1 7057 6751 8 1705 1627 96 26 9 chr6 146883024 146883256 -2633781 + Lx4A LINE L1 6520 6755 -303 8 1705 641 301 5 21 chr6 146883257 146883447 -2633590 - MER58A DNA MER1_type -9 215 29 8 1705 678 58 0 0 chr6 146884475 146884562 -2632475 + (TG)n Simple_repeat Simple_repeat 2 88 0 8 1705 241 176 72 14 chr6 146884703 146884772 -2632265 + ID SINE ID 1 73 -151 8 1705 23 33 0 0 chr6 146884932 146884962 -2632075 + AT_rich Low_complexity Low_complexity 1 30 0 8 1705 1204 48 0 7 chr6 146884965 146885113 -2631924 - B1_Mm SINE Alu 0 147 1 8 1705 286 253 25 12 chr6 146885278 146885377 -2631660 + B3A SINE B2 25 128 -70 8 1705 477 0 0 0 chr6 146885382 146885435 -2631602 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1705 1266 230 101 93 chr6 146886083 146886720 -2630317 - RCHARR1 DNA MER1_type 0 974 333 8 1705 418 324 61 0 chr6 146886740 146886888 -2630149 - RCHARR1 DNA MER1_type -815 159 3 8 1705 340 281 175 7 chr6 146886896 146887050 -2629987 + MER2 DNA MER2_type 143 322 -23 8 1705 198 304 0 55 chr6 146887076 146887149 -2629888 - L2c LINE L2 0 3387 3319 8 1705 712 159 22 7 chr6 146888191 146888330 -2628707 + B1_Mur4 SINE Alu 3 143 -7 8 1705 423 321 41 5 chr6 146888661 146888855 -2628182 - L1ME3A LINE L1 -183 5990 5790 8 1705 942 222 29 5 chr6 146888928 146889132 -2627905 - B3 SINE B2 -7 209 1 8 1705 623 266 15 75 chr6 146889132 146889331 -2627706 - B3A SINE B2 -1 197 11 8 1705 420 256 112 0 chr6 146891615 146891740 -2625297 + B1_Mur2 SINE Alu 2 140 -9 8 1705 366 356 0 0 chr6 146891777 146891892 -2625145 + PB1D10 SINE Alu 1 115 -2 8 1705 877 81 59 0 chr6 146892618 146892754 -2624283 - B2_Mm2 SINE B2 -1 194 51 8 1705 373 189 11 11 chr6 146892890 146892981 -2624056 + CT-rich Low_complexity Low_complexity 3 93 0 8 1705 602 217 0 0 chr6 146894106 146894221 -2622816 + PB1D10 SINE Alu 1 115 -2 8 1705 249 238 68 0 chr6 146894236 146894312 -2622725 + BC1_Mm scRNA scRNA 2 87 -65 8 1705 38 39 0 0 chr6 146894312 146894364 -2622673 + AT_rich Low_complexity Low_complexity 1 52 0 8 1705 732 199 88 25 chr6 146894562 146894722 -2622315 - B3 SINE B2 0 216 47 8 1705 1121 244 69 74 chr6 146895215 146895662 -2621375 + MER82 DNA MER2_type 25 469 -184 8 1705 307 269 64 26 chr6 146896584 146896714 -2620323 - MIR SINE MIR -98 164 35 8 1705 1385 207 160 79 chr6 146897544 146898026 -2619011 + MT2A LTR ERVL 13 533 0 8 1705 280 291 104 39 chr6 146898196 146898350 -2618687 - L1MC4 LINE L1 -406 7636 7473 8 1705 711 207 0 0 chr6 146899341 146899462 -2617575 - B1_Mur2 SINE Alu -9 140 20 8 1705 240 286 43 104 chr6 146903146 146903310 -2613727 + MLT2C1 LTR ERVL 396 549 -14 8 1705 240 35 0 0 chr6 146903463 146903492 -2613545 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1705 458 226 135 16 chr6 146903565 146903691 -2613346 - B3A SINE B2 -20 196 56 8 1705 289 266 25 0 chr6 146904166 146904245 -2612792 + ID4 SINE ID 1 81 -2 8 1705 230 214 111 0 chr6 146905104 146905221 -2611816 - MER33 DNA MER1_type -39 285 156 8 1705 317 330 11 0 chr6 146905358 146905449 -2611588 + L1ME1 LINE L1 6073 6164 -15 8 1705 243 241 42 20 chr6 146906618 146906707 -2610330 - PB1D10 SINE Alu -12 137 49 8 1705 374 278 52 0 chr6 146907058 146907173 -2609864 - MER5A DNA MER1_type 0 189 69 8 1705 764 284 63 33 chr6 146908950 146909252 -2607785 - MLT1B LTR MaLR -79 311 1 8 1705 24 53 0 0 chr6 146911768 146911806 -2605231 + AT_rich Low_complexity Low_complexity 1 38 0 8 1705 714 283 0 0 chr6 146911828 146912008 -2605029 - B3A SINE B2 -18 180 1 8 1705 329 232 52 47 chr6 146912479 146912593 -2604444 + B1F SINE Alu 4 115 -5 8 1705 568 285 177 23 chr6 146912651 146913046 -2603991 + RMER5 LTR ERV1 79 534 0 8 1705 453 282 62 14 chr6 146914570 146914714 -2602323 + MER2 DNA MER2_type 190 340 -5 8 1705 473 271 57 0 chr6 146916058 146916198 -2600839 + B1F SINE Alu 1 148 -1 8 1705 352 258 41 10 chr6 146917372 146917470 -2599567 + PB1D7 SINE Alu 1 101 -19 8 1705 293 186 109 22 chr6 146918114 146918235 -2598802 - MTD LTR MaLR -56 363 190 8 1705 229 204 0 0 chr6 146918889 146918938 -2598099 + tRNA-Pro-CCY tRNA tRNA 1 49 -26 8 1705 250 226 40 79 chr6 146919153 146919254 -2597783 + L1MEf LINE L1 2027 2123 -4077 8 1705 260 213 0 32 chr6 146919373 146919436 -2597601 + PB1 SINE Alu 14 74 -53 8 1705 200 111 0 27 chr6 146919909 146919946 -2597091 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 1705 21 0 0 0 chr6 146920389 146920410 -2596627 + AT_rich Low_complexity Low_complexity 1 21 0 8 1705 716 161 88 0 chr6 146920904 146921041 -2595996 - B1_Mur3 SINE Alu 0 149 1 8 1705 328 329 63 38 chr6 146920906 146921064 -2595973 - B4A SINE B4 -68 224 63 8 1705 740 167 0 0 chr6 146921682 146921808 -2595229 + B1F2 SINE Alu 18 143 -6 8 1705 240 246 35 2 chr6 146922074 146922139 -2594898 + ID4 SINE ID 25 90 -62 8 1705 405 39 0 0 chr6 146922226 146922277 -2594760 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1705 473 176 90 154 chr6 146922424 146922625 -2594412 - RMER12 LTR ERVK -135 1187 1000 8 1705 315 0 0 0 chr6 146922636 146922671 -2594366 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1705 3197 134 53 0 chr6 146922671 146923238 -2593799 - RMER12 LTR ERVK -435 887 291 8 1705 4091 51 0 0 chr6 146923238 146923725 -2593312 - L1Md_F2 LINE L1 -195 6387 5901 8 1705 1535 32 0 0 chr6 146923725 146923910 -2593127 + L1Md_F2 LINE L1 6384 6568 -14 8 1705 1710 151 22 44 chr6 146923912 146924230 -2592807 - RMER12 LTR ERVK -1010 312 2 8 1705 395 337 106 30 chr6 146924230 146924429 -2592608 + MER2 DNA MER2_type 132 345 0 8 1705 650 227 8 0 chr6 146925617 146925749 -2591288 - B1_Mur1 SINE Alu -16 133 1 8 1705 477 358 0 0 chr6 146925847 146926079 -2590958 + (CA)n Simple_repeat Simple_repeat 1 232 0 8 1705 202 260 0 52 chr6 146926086 146926163 -2590874 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 8 1705 234 143 0 0 chr6 146927124 146927173 -2589864 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 8 1705 365 205 66 33 chr6 146927177 146927268 -2589769 - B3 SINE B2 -116 100 7 8 1705 1911 114 16 19 chr6 146929033 146929355 -2587682 + ORR1A4 LTR MaLR 1 321 -8 8 1705 227 259 153 0 chr6 146929705 146929790 -2587247 - PB1D7 SINE Alu -1 119 22 8 1705 932 241 46 43 chr6 146930466 146930770 -2586267 - ORR1E LTR MaLR -2 357 53 8 1705 351 335 57 14 chr6 146930873 146931082 -2585955 - L1MB3 LINE L1 -36 6147 5930 8 1705 375 121 0 0 chr6 146931372 146931430 -2585607 + (CAT)n Simple_repeat Simple_repeat 1 58 0 8 1706 484 304 82 50 chr6 146932271 146932551 -2584486 - B4A SINE B4 -1 291 3 8 1706 241 286 104 0 chr6 146932559 146932636 -2584401 - BC1_Mm scRNA scRNA -62 90 6 8 1706 423 167 16 136 chr6 146932902 146933027 -2584010 + MT2B LTR ERVL 148 257 -344 8 1706 986 39 8 0 chr6 146932942 146933071 -2583966 + B1_Mus1 SINE Alu 19 148 0 8 1706 198 0 0 0 chr6 146933071 146933093 -2583944 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1706 1041 233 63 23 chr6 146933228 146933531 -2583506 + Lx8 LINE L1 6968 7282 -191 8 1706 703 275 184 54 chr6 146934606 146934921 -2582116 - MTD LTR MaLR -56 363 8 8 1706 243 242 157 83 chr6 146936370 146936478 -2580559 + PB1 SINE Alu 10 125 -2 8 1706 198 155 16 49 chr6 146936962 146937023 -2580014 + CT-rich Low_complexity Low_complexity 3 61 0 8 1706 283 129 145 11 chr6 146937358 146937429 -2579608 + B1F SINE Alu 1 77 -50 8 1706 644 264 0 0 chr6 146937579 146937708 -2579329 + B1_Mur1 SINE Alu 3 131 -18 8 1706 477 145 0 24 chr6 146937700 146937785 -2579252 + B1_Mur4 SINE Alu 67 149 -1 8 1706 1263 214 180 3 chr6 146938453 146938776 -2578261 + MTD LTR MaLR 1 380 -39 8 1706 448 270 134 6 chr6 146939233 146939412 -2577625 + MER2 DNA MER2_type 144 345 0 8 1706 417 262 18 18 chr6 146939492 146939595 -2577442 + PB1D7 SINE Alu 1 104 -16 8 1706 1683 21 0 20 chr6 146939595 146939791 -2577246 - B2_Mm1a SINE B2 0 193 2 8 1706 223 239 14 69 chr6 146940681 146940753 -2576284 + ID4 SINE ID 2 69 -14 8 1706 943 95 29 0 chr6 146942097 146942234 -2574803 - B1_Mur4 SINE Alu -9 141 1 8 1706 320 43 0 21 chr6 146943556 146943603 -2573434 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1706 698 259 85 116 chr6 146943885 146944232 -2572805 + MTD LTR MaLR 20 366 -53 8 1706 450 36 0 0 chr6 146944232 146944288 -2572749 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1706 698 259 85 116 chr6 146944288 146944338 -2572699 + MTD LTR MaLR 367 405 -14 8 1706 283 302 85 58 chr6 146944349 146944627 -2572410 - MTEa LTR MaLR -16 363 54 8 1706 258 32 0 0 chr6 146944877 146944908 -2572129 + (TTA)n Simple_repeat Simple_repeat 1 31 0 8 1706 222 320 20 30 chr6 146946927 146947027 -2570010 + PB1D10 SINE Alu 19 117 0 8 1706 759 92 0 0 chr6 146947067 146947176 -2569861 + (TG)n Simple_repeat Simple_repeat 2 110 0 8 1706 259 339 67 41 chr6 146947519 146947713 -2569324 + Charlie10 DNA MER1_type 26 224 -2598 9 1706 216 261 62 0 chr6 146950423 146950488 -2566549 - RSINE1 SINE B4 -96 69 1 9 1706 584 166 212 0 chr6 146951226 146951377 -2565660 - URR1A DNA MER1_type 0 226 44 9 1706 429 186 14 0 chr6 146951399 146951469 -2565568 - ID4_ SINE ID -10 73 3 9 1706 2030 145 95 21 chr6 146951905 146952293 -2564744 - MTD LTR MaLR 0 419 3 9 1706 25 31 0 0 chr6 146952326 146952358 -2564679 + AT_rich Low_complexity Low_complexity 1 32 0 9 1706 221 261 74 32 chr6 146952655 146952681 -2564356 - B4A SINE B4 -193 99 77 9 1706 500 254 105 44 chr6 146952681 146952862 -2564175 - B3A SINE B2 -5 193 2 9 1706 221 261 74 32 chr6 146952862 146952930 -2564107 - B4A SINE B4 -216 76 2 9 1706 970 185 16 26 chr6 146953145 146953339 -2563698 + B3A SINE B2 7 198 0 9 1706 218 236 160 34 chr6 146953355 146953465 -2563572 + B1F SINE Alu 6 117 0 9 1706 288 183 21 11 chr6 146953820 146953914 -2563123 + (TAGG)n Simple_repeat Simple_repeat 1 95 0 9 1706 225 0 0 0 chr6 146953935 146953960 -2563077 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 9 1706 715 219 0 0 chr6 146953967 146954090 -2562947 - ID_B1 SINE B4 -11 213 91 9 1706 401 307 91 21 chr6 146955526 146955769 -2561268 - MLT1H-int LTR MaLR -111 1298 1039 9 1706 257 250 69 0 chr6 146956109 146956181 -2560856 - MLT1H-int LTR MaLR -952 537 461 9 1706 279 219 118 40 chr6 146956585 146956661 -2560376 - PB1D7 SINE Alu -1 119 38 9 1706 782 214 76 5 chr6 146956769 146956966 -2560071 - B3 SINE B2 0 216 6 9 1706 208 139 0 0 chr6 146957025 146957061 -2559976 + (TAAAAA)n Simple_repeat Simple_repeat 5 40 0 9 1706 211 136 373 0 chr6 146957350 146957409 -2559628 + PB1D10 SINE Alu 17 97 -20 9 1706 318 180 0 0 chr6 146957446 146957507 -2559530 + GA-rich Low_complexity Low_complexity 1 61 0 9 1706 39 0 0 0 chr6 146957552 146957591 -2559446 + AT_rich Low_complexity Low_complexity 1 39 0 9 1706 1149 78 0 0 chr6 146957804 146957946 -2559091 + B1_Mus1 SINE Alu 2 143 -5 9 1706 269 325 78 45 chr6 146959089 146959331 -2557706 + Tigger5 DNA MER2_type 2157 2406 0 9 1706 188 277 0 12 chr6 146960302 146960386 -2556651 + CT-rich Low_complexity Low_complexity 2 84 0 9 1706 233 268 133 10 chr6 146960423 146960521 -2556516 - PB1D10 SINE Alu -7 110 1 9 1706 595 286 163 0 chr6 146961803 146961981 -2555056 + B3 SINE B2 2 208 -8 9 1706 568 196 0 0 chr6 146962015 146962117 -2554920 + PB1D9 SINE Alu 14 115 -5 9 1706 244 197 48 16 chr6 146962135 146962197 -2554840 + B3A SINE B2 73 136 -62 9 1706 288 0 0 0 chr6 146962197 146962229 -2554808 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 9 1706 23 0 0 0 chr6 146962483 146962506 -2554531 + AT_rich Low_complexity Low_complexity 1 23 0 9 1706 417 345 54 6 chr6 146962601 146962767 -2554270 + MER58A DNA MER1_type 11 184 -40 9 1706 246 133 44 0 chr6 146962909 146962954 -2554083 + L1ME3B LINE L1 5954 6000 -240 9 1706 1100 212 86 0 chr6 146963010 146963279 -2553758 + B4A SINE B4 1 292 0 9 1706 541 313 6 12 chr6 146963530 146963695 -2553342 + RSINE1 SINE B4 2 165 0 9 1706 252 241 0 18 chr6 146966589 146966644 -2550393 - PB1D10 SINE Alu -61 56 3 9 1706 323 232 73 10 chr6 146967071 146967167 -2549870 - PB1D7 SINE Alu -18 102 1 9 1706 1097 79 37 0 chr6 146967307 146967471 -2549566 - B2_Mm1t SINE B2 -1 192 23 9 1706 207 282 152 12 chr6 146968436 146968601 -2548436 + MIR SINE MIR 16 203 -59 9 1706 21 0 0 0 chr6 146969080 146969101 -2547936 + AT_rich Low_complexity Low_complexity 1 21 0 9 1706 1141 160 0 10 chr6 146969377 146969579 -2547458 - L1_Mur1 LINE L1 -6124 858 659 9 1706 340 206 15 0 chr6 146970027 146970095 -2546942 + ID4 SINE ID 4 72 -11 9 1706 299 266 97 65 chr6 146971784 146971968 -2545069 - MIR SINE MIR -72 190 3 9 1706 291 190 17 0 chr6 146972156 146972214 -2544823 + L1MD3 LINE L1 7742 7800 -195 9 1706 461 230 16 47 chr6 146972238 146972366 -2544671 + RSINE1 SINE B4 2 125 -40 9 1706 450 0 0 0 chr6 146972366 146972416 -2544621 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1706 197 132 26 0 chr6 146972573 146972611 -2544426 + GA-rich Low_complexity Low_complexity 2 40 0 9 1706 388 246 160 34 chr6 146972642 146972860 -2544177 + L1MD3 LINE L1 7788 7991 -4 9 1706 907 151 0 20 chr6 146972860 146973009 -2544028 - B1_Mur2 SINE Alu -1 148 3 9 1706 625 204 158 6 chr6 146975470 146975620 -2541417 + B3 SINE B2 3 179 -37 9 1706 270 0 0 0 chr6 146975620 146975650 -2541387 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1706 625 204 158 6 chr6 146975650 146975676 -2541361 + B3 SINE B2 180 206 -10 9 1706 340 326 11 0 chr6 146977041 146977130 -2539907 + PB1D10 SINE Alu 1 90 -27 9 1706 243 290 44 53 chr6 146977613 146977726 -2539311 - PB1D10 SINE Alu 0 117 6 9 1706 22 0 0 0 chr6 146982523 146982545 -2534492 + AT_rich Low_complexity Low_complexity 1 22 0 9 1706 1597 37 0 10 chr6 146982577 146982770 -2534267 + B2_Mm1t SINE B2 1 191 -2 9 1706 422 292 29 14 chr6 146983023 146983162 -2533875 + B1F1 SINE Alu 6 146 -3 9 1706 279 176 156 39 chr6 146983877 146983954 -2533083 + PB1D7 SINE Alu 35 120 0 9 1706 244 225 122 40 chr6 146984447 146984521 -2532516 + ID SINE ID 2 81 -143 9 1706 767 223 141 6 chr6 146984588 146984807 -2532230 + MTEa LTR MaLR 1 248 -131 9 1706 198 0 0 0 chr6 146984807 146984829 -2532208 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1706 207 0 0 0 chr6 146984869 146984892 -2532145 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1706 300 298 99 0 chr6 146985354 146985475 -2531562 + MER5B DNA MER1_type 43 175 -3 9 1706 210 71 0 0 chr6 146985477 146985505 -2531532 + (TTTCC)n Simple_repeat Simple_repeat 3 30 0 9 1706 1489 48 5 31 chr6 146985972 146986165 -2530872 + B2_Mm1a SINE B2 2 189 -4 9 1706 13655 82 30 15 chr6 146986318 146988409 -2528628 - L1VL2 LINE L1 -628 2987 866 9 1706 405 0 0 0 chr6 146988409 146988454 -2528583 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1706 5892 86 163 11 chr6 146988454 146989187 -2527850 - L1VL2 LINE L1 -5470 865 3 9 1706 342 106 0 0 chr6 146989187 146989234 -2527803 - L1VL2 LINE L1 -6127 208 162 9 1706 497 219 179 0 chr6 146989241 146989364 -2527673 - B1_Mur2 SINE Alu 0 149 5 9 1706 1040 211 45 0 chr6 146989399 146989598 -2527439 - B3 SINE B2 -6 210 3 9 1706 1140 56 0 14 chr6 146990422 146990567 -2526470 + B1_Mus2 SINE Alu 5 147 0 9 1706 486 0 0 0 chr6 146990690 146990744 -2526293 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1706 480 271 142 11 chr6 146990871 146991061 -2525976 + B3 SINE B2 2 216 0 9 1706 369 0 0 0 chr6 146991096 146991137 -2525900 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 9 1706 383 231 183 24 chr6 146992309 146992522 -2524515 - L2 LINE L2 -580 2839 2593 9 1706 239 351 0 0 chr6 146993514 146993588 -2523449 - MLT2B5 LTR ERVL -77 478 405 9 1706 416 257 29 10 chr6 146994336 146994438 -2522599 + PB1D7 SINE Alu 1 104 -16 9 1706 797 188 53 59 chr6 146995108 146995295 -2521742 - B3A SINE B2 0 198 13 9 1706 26 0 0 0 chr6 146995472 146995498 -2521539 + AT_rich Low_complexity Low_complexity 1 26 0 9 1706 633 219 43 37 chr6 146995525 146995686 -2521351 - RSINE1 SINE B4 0 165 4 9 1706 559 224 63 156 chr6 146995768 146995871 -2521166 - ID_B1 SINE B4 -7 217 139 9 1706 1255 198 0 0 chr6 146995871 146996083 -2520954 - B3 SINE B2 -4 212 1 9 1706 559 224 63 156 chr6 146996083 146996217 -2520820 - ID_B1 SINE B4 -86 138 2 9 1706 218 217 0 130 chr6 146997129 146997198 -2519839 - PB1D10 SINE Alu -34 83 24 9 1706 377 219 36 45 chr6 146997793 146997903 -2519134 - PB1D10 SINE Alu -2 115 7 9 1706 360 333 9 0 chr6 146998177 146998282 -2518755 + PB1 SINE Alu 6 111 -16 9 1706 294 285 120 0 chr6 146998532 146998632 -2518405 - B1F SINE Alu -26 123 12 9 1706 969 176 56 46 chr6 146998724 146998921 -2518116 - B3 SINE B2 -15 201 3 9 1706 253 307 99 0 chr6 146998986 146999087 -2517950 + PB1D10 SINE Alu 6 116 -1 9 1706 225 0 0 0 chr6 146999101 146999126 -2517911 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 9 1706 326 288 200 30 chr6 146999552 146999717 -2517320 - Lx8 LINE L1 -7 7466 7274 9 1706 770 274 97 11 chr6 146999731 147000000 -2517037 - Lx8 LINE L1 -254 7219 6928 9 1706 1267 274 105 37 chr6 147000017 147000560 -2516477 - Lx8 LINE L1 -572 6901 6322 1 1706 534 285 23 0 chr6 147000831 147000961 -2516076 - B1F SINE Alu 0 149 17 2 1706 279 0 0 0 chr6 147000998 147001029 -2516008 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1706 344 277 60 35 chr6 147001304 147001420 -2515617 - MTEa LTR MaLR -3 376 258 4 1706 331 238 0 70 chr6 147001488 147001574 -2515463 - MTEa LTR MaLR -231 128 49 4 1706 25 0 0 0 chr6 147001979 147002004 -2515033 + AT_rich Low_complexity Low_complexity 1 25 0 5 1706 276 100 0 0 chr6 147002082 147002122 -2514915 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1706 752 200 17 101 chr6 147002180 147002358 -2514679 - RSINE1 SINE B4 -1 164 2 7 1706 222 372 80 33 chr6 147002597 147002747 -2514290 - MIR SINE MIR -79 183 27 8 1706 477 206 31 0 chr6 147003120 147003217 -2513820 - B1F SINE Alu -2 147 48 9 1706 245 224 19 58 chr6 147004712 147004764 -2512273 - RSINE1 SINE B4 -57 108 59 1 1706 947 255 72 46 chr6 147004803 147005148 -2511889 - ORR1E LTR MaLR -5 354 1 1 1706 217 197 15 15 chr6 147005259 147005326 -2511711 + (TATG)n Simple_repeat Simple_repeat 4 70 0 1 1706 609 307 91 18 chr6 147005354 147005573 -2511464 - B4A SINE B4 -3 289 55 1 1706 207 293 232 0 chr6 147005649 147005813 -2511224 - MIRc SINE MIR -20 248 47 1 1706 252 286 176 0 chr6 147006524 147006615 -2510422 - PB1D10 SINE Alu -6 111 5 1 1706 307 253 35 24 chr6 147007503 147007588 -2509449 + B1F1 SINE Alu 5 90 -59 1 1706 360 0 0 0 chr6 147007850 147007890 -2509147 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1706 1123 89 7 0 chr6 147008144 147008290 -2508747 - B1_Mus1 SINE Alu 0 148 2 1 1706 300 283 0 0 chr6 147008809 147008982 -2508055 + (TG)n Simple_repeat Simple_repeat 2 174 0 1 1706 982 201 59 0 chr6 147009283 147009487 -2507550 - B3 SINE B2 0 216 1 2 1706 596 211 0 17 chr6 147009710 147009826 -2507211 - B1_Mur1 SINE Alu -1 148 35 2 1706 213 191 21 0 chr6 147010124 147010171 -2506866 - B1F1 SINE Alu -101 48 1 2 1706 231 259 68 85 chr6 147010171 147010247 -2506790 - B4A SINE B4 -206 86 13 2 1706 2026 147 45 0 chr6 147011547 147011859 -2505178 - ORR1A3 LTR MaLR 0 326 1 2 1706 562 192 48 40 chr6 147012830 147012955 -2504082 - RSINE1 SINE B4 -36 129 4 2 1706 434 269 66 15 chr6 147013291 147013427 -2503610 + MIR SINE MIR 84 226 -36 2 1706 203 220 60 0 chr6 147013621 147013671 -2503366 + MIRm SINE MIR 224 276 0 2 1706 261 151 0 0 chr6 147013762 147013815 -2503222 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1706 509 204 208 13 chr6 147013819 147013968 -2503069 - B3A SINE B2 -16 182 5 2 1706 724 281 81 39 chr6 147014143 147014402 -2502635 - B4A SINE B4 -22 270 1 3 1706 3548 61 2 40 chr6 147014440 147014918 -2502119 - L1_Mus1 LINE L1 0 6567 6108 3 1706 388 179 15 0 chr6 147015761 147015828 -2501209 + B1F SINE Alu 21 88 -61 3 1706 524 275 50 0 chr6 147015919 147016101 -2500936 - B3A SINE B2 -6 192 2 3 1706 4963 169 90 54 chr6 147016420 147017413 -2499624 - RLTR25B LTR ERVK 0 1028 1 3 1706 242 300 71 0 chr6 147017906 147017976 -2499061 + PB1D10 SINE Alu 1 75 -42 3 1706 268 200 224 31 chr6 147018160 147018258 -2498779 - PB1D7 SINE Alu 0 120 4 3 1706 450 300 30 30 chr6 147018609 147018743 -2498294 + ID_B1 SINE B4 78 211 -13 3 1706 236 53 26 0 chr6 147019477 147019515 -2497522 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 3 1706 227 254 36 0 chr6 147020362 147020417 -2496620 - ID4_ SINE ID -20 63 7 3 1706 444 225 11 11 chr6 147020854 147020944 -2496093 - B3A SINE B2 -108 90 1 4 1706 251 183 0 77 chr6 147021331 147021347 -2495690 + ID_B1 SINE B4 164 223 -1 4 1706 252 109 61 61 chr6 147021347 147021396 -2495641 + PB1D7 SINE Alu 71 119 -1 4 1706 564 47 12 0 chr6 147022125 147022210 -2494827 - L1Md_F2 LINE L1 0 6582 6497 4 1706 225 0 0 0 chr6 147022332 147022357 -2494680 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1706 252 283 0 0 chr6 147022530 147022636 -2494401 + (TG)n Simple_repeat Simple_repeat 1 106 0 4 1706 334 259 134 40 chr6 147022638 147022787 -2494250 - RSINE1 SINE B4 0 165 3 4 1706 377 235 67 58 chr6 147022993 147023097 -2493940 - RSINE1 SINE B4 0 165 61 4 1706 382 188 29 0 chr6 147023264 147023333 -2493704 - ID_B1 SINE B4 -2 222 152 4 1706 342 167 80 114 chr6 147023333 147023352 -2493685 - B1F SINE Alu 0 149 65 4 1706 366 236 118 36 chr6 147023344 147023360 -2493677 - B1F1 SINE Alu -19 130 53 5 1706 438 204 102 0 chr6 147023360 147023448 -2493589 - ID_B1 SINE B4 -28 196 100 5 1706 222 62 0 0 chr6 147023549 147023581 -2493456 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1706 21 0 0 0 chr6 147024300 147024321 -2492716 + AT_rich Low_complexity Low_complexity 1 21 0 5 1706 226 269 62 25 chr6 147025437 147025517 -2491520 - RLTR20B2 LTR ERVK -399 161 79 5 1706 580 232 36 7 chr6 147025472 147025611 -2491426 + MTD LTR MaLR 18 160 -259 5 1706 242 211 19 0 chr6 147025661 147025713 -2491324 + MTD LTR MaLR 279 331 -88 5 1706 2865 52 2 88 chr6 147025719 147026141 -2490896 - RLTR10 LTR ERVK -4 386 1 5 1706 12933 20 0 7 chr6 147026143 147028026 -2489011 - RLTR10-int LTR ERVK -3 1984 41 5 1706 2865 52 2 88 chr6 147028042 147028464 -2488573 - RLTR10 LTR ERVK -4 386 1 5 1706 967 241 52 23 chr6 147028518 147028803 -2488234 - ORR1D2 LTR MaLR -3 367 8 5 1706 231 221 44 0 chr6 147028799 147028867 -2488170 + MTD LTR MaLR 349 419 0 5 1706 320 274 74 66 chr6 147029601 147029722 -2487315 - B4 SINE B4 -21 271 150 5 1706 201 39 0 0 chr6 147030313 147030339 -2486698 + (CAGAGA)n Simple_repeat Simple_repeat 4 29 0 5 1706 384 101 162 30 chr6 147030390 147030500 -2486537 - B2_Mm2 SINE B2 -5 190 46 6 1706 1264 54 0 0 chr6 147030533 147030680 -2486357 - B1_Mm SINE Alu 0 147 1 6 1706 1245 119 11 0 chr6 147030685 147030862 -2486175 - B2_Mm1t SINE B2 -14 179 1 6 1706 310 205 75 25 chr6 147030862 147030942 -2486095 - PB1D7 SINE Alu -36 84 1 6 1706 284 179 412 12 chr6 147031139 147031224 -2485813 - B1F SINE Alu 0 120 2 6 1706 651 205 79 0 chr6 147031249 147031376 -2485661 - B1_Mur1 SINE Alu -8 141 5 6 1706 1416 70 11 11 chr6 147031543 147031732 -2485305 + B2_Mm2 SINE B2 2 190 -5 6 1706 622 230 0 45 chr6 147032523 147032655 -2484382 - B1F SINE Alu -18 131 6 6 1706 262 270 118 73 chr6 147032701 147032837 -2484200 - B3 SINE B2 -6 210 69 6 1706 677 277 68 72 chr6 147033225 147033517 -2483520 - B4 SINE B4 0 292 2 6 1706 729 260 87 10 chr6 147033519 147033725 -2483312 - ID_B1 SINE B4 0 224 3 7 1706 447 254 71 39 chr6 147034215 147034342 -2482695 + ID_B1 SINE B4 89 219 -5 7 1706 469 264 16 0 chr6 147034355 147034480 -2482557 + Lx8 LINE L1 7104 7230 -243 7 1706 356 302 52 103 chr6 147034799 147034954 -2482083 - B1F SINE Alu -2 147 1 7 1706 399 21 0 0 chr6 147035979 147036027 -2481010 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 7 1706 490 46 15 0 chr6 147036049 147036114 -2480923 + B1_Mm SINE Alu 81 146 -1 7 1706 427 287 32 95 chr6 147036390 147036548 -2480489 - RSINE1 SINE B4 -14 151 4 7 1706 459 0 0 0 chr6 147036574 147036625 -2480412 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1706 536 186 39 19 chr6 147036648 147036752 -2480285 - PB1D9 SINE Alu -5 115 10 7 1706 354 277 11 150 chr6 147036666 147036853 -2480184 - ID_B1 SINE B4 -49 175 15 7 1706 635 244 30 0 chr6 147036902 147037033 -2480004 - B1_Mur1 SINE Alu -3 146 12 8 1706 720 201 72 91 chr6 147037032 147037132 -2479905 - RCHARR1 DNA MER1_type -24 950 843 8 1706 1089 108 85 0 chr6 147037132 147037308 -2479729 + B2_Mm2 SINE B2 1 191 -4 8 1706 720 201 72 91 chr6 147037308 147037470 -2479567 - RCHARR1 DNA MER1_type -132 842 693 8 1706 752 11 0 21 chr6 147037557 147037633 -2479404 + (TTC)n Simple_repeat Simple_repeat 1 75 0 8 1706 1170 117 0 0 chr6 147037633 147037812 -2479225 + (TCC)n Simple_repeat Simple_repeat 2 180 0 8 1706 752 11 0 21 chr6 147037812 147037829 -2479208 + (TTC)n Simple_repeat Simple_repeat 2 18 0 8 1706 1272 240 90 20 chr6 147037836 147038236 -2478801 - Lx8 LINE L1 -323 7150 6723 8 1706 488 271 83 17 chr6 147039701 147039881 -2477156 + B3A SINE B2 4 195 -3 8 1706 28 0 0 0 chr6 147039929 147039957 -2477080 + GC_rich Low_complexity Low_complexity 1 28 0 8 1706 549 0 0 0 chr6 147041567 147041628 -2475409 + (TA)n Simple_repeat Simple_repeat 1 61 0 8 1706 405 211 17 83 chr6 147041648 147041763 -2475274 - PB1 SINE Alu -37 112 12 9 1706 403 290 28 9 chr6 147041962 147042070 -2474967 + B1F SINE Alu 21 130 -19 9 1706 864 108 0 0 chr6 147042185 147042315 -2474722 + (TC)n Simple_repeat Simple_repeat 2 131 0 9 1706 214 237 0 0 chr6 147042315 147042353 -2474684 + polypyrimidine Low_complexity Low_complexity 2 39 0 9 1706 877 145 35 0 chr6 147042354 147042499 -2474538 - B1_Mur4 SINE Alu 0 150 1 9 1706 379 229 112 52 chr6 147042625 147042784 -2474253 + B3A SINE B2 12 186 -9 9 1706 29 70 0 0 chr6 147042998 147043055 -2473982 + AT_rich Low_complexity Low_complexity 1 57 0 9 1706 320 263 189 31 chr6 147043684 147043943 -2473094 - L1M5 LINE L1 -1692 4454 4155 9 1706 664 229 42 10 chr6 147043970 147044124 -2472913 - ID_B1 SINE B4 -64 228 76 9 1706 927 126 37 0 chr6 147044596 147044731 -2472306 - B1_Mus1 SINE Alu -7 141 2 9 1706 854 217 91 5 chr6 147044760 147044959 -2472078 - B3 SINE B2 0 216 1 1 1706 21 0 0 0 chr6 147045053 147045074 -2471963 + AT_rich Low_complexity Low_complexity 1 21 0 1 1706 689 279 6 18 chr6 147045415 147045579 -2471458 + RSINE1 SINE B4 4 165 0 1 1706 198 103 0 0 chr6 147045624 147045653 -2471384 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1706 26 0 0 0 chr6 147045806 147045832 -2471205 + AT_rich Low_complexity Low_complexity 1 26 0 1 1706 934 149 0 0 chr6 147046559 147046700 -2470337 - B1_Mur4 SINE Alu -7 143 3 1 1706 318 171 14 54 chr6 147046723 147046797 -2470240 - PB1D10 SINE Alu -3 114 44 1 1706 359 280 200 0 chr6 147047247 147047372 -2469665 + RSINE1 SINE B4 1 150 -15 1 1706 236 284 61 31 chr6 147047453 147047551 -2469486 + B3 SINE B2 1 101 -115 1 1706 225 317 31 65 chr6 147047607 147047732 -2469305 - MIR SINE MIR -93 183 57 1 1706 804 218 14 77 chr6 147048915 147049124 -2467913 - B3A SINE B2 -1 197 2 1 1706 433 308 96 96 chr6 147049206 147049551 -2467486 + ORR1E LTR MaLR 24 368 -2 1 1706 254 300 107 67 chr6 147049596 147049746 -2467291 - MER2 DNA MER2_type -114 231 76 1 1706 287 312 0 30 chr6 147051252 147051351 -2465686 + PB1D10 SINE Alu 1 96 -21 1 1706 288 216 35 121 chr6 147051332 147051448 -2465589 + LTR33A_ LTR ERVL 155 260 -271 1 1706 3152 56 0 8 chr6 147051507 147051902 -2465135 - L1Md_F2 LINE L1 -1 6581 6190 1 1706 295 239 18 54 chr6 147052344 147052441 -2464596 - B1F SINE Alu -60 89 9 1 1706 188 61 61 0 chr6 147052883 147052916 -2464121 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1706 612 125 0 0 chr6 147052917 147053013 -2464024 + (GGA)n Simple_repeat Simple_repeat 2 97 0 1 1706 517 169 221 33 chr6 147053105 147053227 -2463810 - B1_Mur2 SINE Alu 0 149 5 1 1706 597 200 40 67 chr6 147053290 147053440 -2463597 + B1F SINE Alu 3 148 -1 1 1706 505 245 9 0 chr6 147053878 147053984 -2463053 - PB1D10 SINE Alu -8 109 3 1 1706 1026 39 16 0 chr6 147054493 147054620 -2462417 - B1_Mus1 SINE Alu 0 148 20 1 1706 1268 41 0 0 chr6 147054656 147054803 -2462234 + B1_Mus2 SINE Alu 1 147 0 1 1706 489 238 30 0 chr6 147054948 147055049 -2461988 - B1F SINE Alu -9 140 37 1 1706 392 272 69 36 chr6 147055829 147056006 -2461031 - PB1D10 SINE Alu -128 186 1 1 1706 216 0 0 0 chr6 147056857 147056881 -2460156 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1 1706 310 248 117 19 chr6 147057312 147057415 -2459622 + RMER30 DNA MER1_type 89 201 -1 1 1706 252 208 0 40 chr6 147058024 147058074 -2458963 + tRNA-Ala-GCY_ tRNA tRNA 28 75 0 1 1706 244 338 65 0 chr6 147058593 147058670 -2458367 - PB1D7 SINE Alu 0 120 39 1 1706 192 163 0 0 chr6 147060435 147060478 -2456559 + T-rich Low_complexity Low_complexity 1 43 0 1 1706 1295 60 52 52 chr6 147061801 147061995 -2455042 - B2_Mm2 SINE B2 0 195 2 1 1706 308 156 16 0 chr6 147062050 147062080 -2454957 + polypyrimidine Low_complexity Low_complexity 35 65 0 1 1706 1172 106 6 0 chr6 147062080 147062259 -2454778 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1706 308 156 16 0 chr6 147062259 147062292 -2454745 + polypyrimidine Low_complexity Low_complexity 2 34 0 1 1706 719 216 29 7 chr6 147062292 147062432 -2454605 - B1_Mur4 SINE Alu -7 143 1 1 1707 256 217 17 0 chr6 147062950 147063010 -2454027 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1707 658 194 44 31 chr6 147063075 147063235 -2453802 + ORR1E LTR MaLR 6 167 -192 1 1707 200 42 0 111 chr6 147063372 147063426 -2453611 + (GGGTG)n Simple_repeat Simple_repeat 3 50 0 1 1707 212 162 0 0 chr6 147063595 147063632 -2453405 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1707 533 279 0 37 chr6 147063786 147063950 -2453087 + RSINE1 SINE B4 8 165 0 1 1707 235 209 0 0 chr6 147065574 147065617 -2451420 + CT-rich Low_complexity Low_complexity 3 45 0 1 1707 312 188 0 0 chr6 147065635 147065704 -2451333 + CT-rich Low_complexity Low_complexity 2 70 0 1 1707 522 0 0 0 chr6 147065803 147065861 -2451176 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1707 272 354 50 0 chr6 147065964 147066063 -2450974 - MTEa LTR MaLR -275 104 1 1 1707 350 289 118 24 chr6 147067231 147067401 -2449636 - MER2 DNA MER2_type -28 317 132 1 1707 234 314 114 21 chr6 147068258 147068398 -2448639 - MER2 DNA MER2_type -189 156 4 1 1707 975 228 32 14 chr6 147068721 147068939 -2448098 + ID_B1 SINE B4 3 224 0 1 1707 405 288 127 15 chr6 147068950 147069084 -2447953 + RSINE1 SINE B4 3 151 -14 1 1707 356 257 34 68 chr6 147069545 147069662 -2447375 + LFSINE_Vert SINE SINE 299 411 -48 1 1707 402 255 46 69 chr6 147070293 147070594 -2446443 + MTEb LTR MaLR 3 372 -7 1 1707 987 297 47 4 chr6 147071068 147071342 -2445695 + B4A SINE B4 3 288 -4 1 1707 414 0 0 0 chr6 147071385 147071431 -2445606 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1707 467 293 142 56 chr6 147071466 147071900 -2445137 - MLT1F1 LTR MaLR -11 558 40 1 1707 376 340 33 20 chr6 147071926 147072076 -2444961 - MLT1F1-int LTR MaLR -7 1482 1331 1 1707 2612 169 87 4 chr6 147072140 147072185 -2444852 - MT2A LTR ERVL 0 533 489 1 1707 459 0 0 0 chr6 147072185 147072236 -2444801 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1707 2612 169 87 4 chr6 147072236 147072682 -2444355 - MT2A LTR ERVL -45 488 2 1 1707 1079 56 0 7 chr6 147072723 147072867 -2444170 + (TTTC)n Simple_repeat Simple_repeat 4 146 0 1 1707 506 178 31 0 chr6 147072901 147073030 -2444007 + CT-rich Low_complexity Low_complexity 1 133 0 1 1707 904 285 5 5 chr6 147073030 147073273 -2443764 - B4 SINE B4 -46 246 3 1 1707 503 327 121 15 chr6 147073789 147074121 -2442916 - MLT1F1-int LTR MaLR -470 939 573 1 1707 812 221 34 65 chr6 147074273 147074581 -2442456 - MT2A LTR ERVL -47 554 315 1 1707 283 265 76 84 chr6 147074632 147074767 -2442270 - MLT1F1-int LTR MaLR -1274 135 1 1 1707 383 359 73 61 chr6 147075123 147075452 -2441585 + ORR1E LTR MaLR 6 338 -21 1 1707 578 226 28 78 chr6 147077218 147077464 -2439573 - MTEa LTR MaLR -3 376 127 1 1707 1127 250 88 0 chr6 147077847 147078175 -2438862 + ORR1E LTR MaLR 1 357 -2 1 1707 562 197 68 8 chr6 147078299 147078417 -2438620 + B1_Mur1 SINE Alu 2 126 -23 1 1707 203 241 17 17 chr6 147078772 147078831 -2438206 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 1 1707 606 189 0 32 chr6 147078837 147079023 -2438014 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1707 246 123 0 50 chr6 147079039 147079099 -2437938 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1707 657 200 54 73 chr6 147079103 147079308 -2437729 - B3 SINE B2 -15 201 1 1 1707 3285 59 66 0 chr6 147079352 147079761 -2437276 - RLTR10C LTR ERVK 0 436 1 1 1707 7321 51 6 48 chr6 147079761 147080733 -2436304 - MMERVK10C-int LTR ERVK 0 7581 6651 1 1707 19183 50 0 1 chr6 147080724 147083227 -2433810 - MMERVK10C-int LTR ERVK -1771 5810 3512 1 1707 301 314 15 75 chr6 147083250 147083384 -2433653 - L1MEg LINE L1 -4117 1967 1842 1 1707 400 0 0 0 chr6 147083426 147083469 -2433568 - MMERVK10C-int LTR ERVK -7314 267 225 1 1707 257 278 0 0 chr6 147083469 147083523 -2433514 - RLTR27 LTR ERVK -34 275 222 1 1707 1356 60 18 0 chr6 147083523 147083691 -2433346 - MMERVK10C-int LTR ERVK -7410 171 1 1 1707 2624 62 225 0 chr6 147083691 147084047 -2432990 - RLTR10C LTR ERVK 0 436 1 1 1707 727 175 32 0 chr6 147084665 147084791 -2432246 + ORR1E LTR MaLR 10 139 -220 1 1707 595 128 0 18 chr6 147084791 147084902 -2432135 + (TG)n Simple_repeat Simple_repeat 2 110 0 1 1707 22 0 0 0 chr6 147084906 147084928 -2432109 + AT_rich Low_complexity Low_complexity 1 22 0 1 1707 450 186 13 27 chr6 147084936 147085085 -2431952 + (TG)n Simple_repeat Simple_repeat 2 148 0 1 1707 899 230 26 10 chr6 147085745 147085938 -2431099 - B3A SINE B2 0 198 3 1 1707 243 0 0 0 chr6 147086000 147086027 -2431010 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1707 210 136 0 0 chr6 147086027 147086071 -2430966 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1707 250 324 70 26 chr6 147086232 147086346 -2430691 - PB1D9 SINE Alu -1 119 1 1 1707 652 254 0 22 chr6 147086346 147086402 -2430635 - B4A SINE B4 -210 82 30 1 1707 573 15 0 0 chr6 147086865 147086931 -2430106 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1707 423 0 0 0 chr6 147088138 147088185 -2428852 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1707 862 153 278 0 chr6 147088324 147088409 -2428628 - RLTR20D LTR ERVK 0 568 482 1 1707 378 0 0 0 chr6 147088409 147088451 -2428586 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1707 2138 145 39 3 chr6 147088451 147088827 -2428210 - RLTR20D LTR ERVK -87 481 1 1 1707 312 191 94 16 chr6 147089097 147089161 -2427876 + RSINE1 SINE B4 3 71 -94 1 1707 2846 175 100 6 chr6 147089740 147090258 -2426779 - Lx5 LINE L1 0 7050 6484 1 1707 3142 148 72 24 chr6 147090257 147090839 -2426198 + Lx5 LINE L1 5853 6462 -588 1 1707 381 272 76 0 chr6 147090839 147090931 -2426106 - B4A SINE B4 -192 100 2 1 1707 622 105 19 0 chr6 147091103 147091208 -2425829 + (TC)n Simple_repeat Simple_repeat 2 108 0 1 1707 504 0 0 0 chr6 147091310 147091366 -2425671 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1 1707 508 127 203 0 chr6 147091366 147091484 -2425553 - Lx4A LINE L1 -6 7052 6911 1 1707 496 294 10 62 chr6 147091582 147091774 -2425263 + B3A SINE B2 1 182 -16 1 1707 216 312 6 0 chr6 147091803 147091878 -2425159 - L2a LINE L2 -15 3411 3284 1 1707 260 240 151 57 chr6 147092213 147092319 -2424718 - PB1D10 SINE Alu 0 117 2 1 1707 611 232 294 14 chr6 147092510 147092614 -2424423 - ORR1D2 LTR MaLR 0 370 257 1 1707 1745 183 72 42 chr6 147092614 147093019 -2424018 - MTD LTR MaLR 0 419 3 1 1707 611 232 294 14 chr6 147093019 147093203 -2423834 - ORR1D2 LTR MaLR -114 256 1 1 1707 21 36 0 0 chr6 147093591 147093619 -2423418 + AT_rich Low_complexity Low_complexity 1 28 0 1 1707 449 223 19 19 chr6 147094797 147094902 -2422135 + PB1D10 SINE Alu 9 113 -4 1 1707 198 0 0 0 chr6 147095052 147095074 -2421963 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1707 376 340 104 91 chr6 147095289 147095365 -2421672 + MLT2B3 LTR ERVL 7 73 -481 1 1707 1239 48 0 0 chr6 147095365 147095512 -2421525 - B1_Mus2 SINE Alu 0 147 1 1 1707 376 340 104 91 chr6 147095512 147095742 -2421295 + MLT2B3 LTR ERVL 74 317 -237 1 1707 520 294 112 45 chr6 147095807 147096031 -2421006 + RMER15 LTR ERVL 337 575 0 1 1707 1366 207 157 44 chr6 147096153 147096491 -2420546 - MTD LTR MaLR -39 380 5 1 1707 742 268 207 30 chr6 147096957 147097257 -2419780 + MLT1D LTR MaLR 5 357 -148 1 1707 1145 69 102 59 chr6 147097708 147097822 -2419215 - B2_Mm2 SINE B2 0 195 92 2 1707 2919 30 3 0 chr6 147097822 147098153 -2418884 - IAPEY3_LTR LTR ERVK 0 332 1 2 1707 1145 69 102 59 chr6 147098153 147098224 -2418813 - B2_Mm2 SINE B2 -104 91 2 2 1707 725 253 0 0 chr6 147098457 147098603 -2418434 + B1F SINE Alu 1 146 -3 2 1707 429 20 0 0 chr6 147098670 147098720 -2418317 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 2 1707 865 283 53 47 chr6 147098736 147099077 -2417960 + RLTR10D LTR ERVK 1 343 -16 2 1707 1572 210 114 13 chr6 147099093 147099470 -2417567 + MTD LTR MaLR 5 419 0 2 1707 755 290 135 31 chr6 147100194 147100454 -2416583 + B4A SINE B4 6 292 0 2 1707 478 259 6 28 chr6 147100456 147100779 -2416258 + (CA)n Simple_repeat Simple_repeat 1 315 0 2 1707 406 205 0 12 chr6 147100779 147100863 -2416174 - B1_Mur4 SINE Alu -15 135 53 2 1707 245 312 29 86 chr6 147100788 147100893 -2416144 - RLTR25B LTR ERVK -509 519 421 2 1707 751 311 137 17 chr6 147100922 147101331 -2415706 - Tigger7 DNA MER2_type -1983 508 51 2 1707 228 294 0 113 chr6 147101771 147101886 -2415151 + MT2B2 LTR ERVL 150 251 -333 2 1707 414 283 142 0 chr6 147101795 147101915 -2415122 + ID_B1 SINE B4 88 224 0 2 1707 462 191 0 0 chr6 147101998 147102134 -2414903 + (CA)n Simple_repeat Simple_repeat 1 136 0 2 1707 591 169 0 0 chr6 147102160 147102308 -2414729 + (CA)n Simple_repeat Simple_repeat 1 148 0 2 1707 753 178 2 0 chr6 147102335 147102766 -2414271 + (CA)n Simple_repeat Simple_repeat 1 431 0 2 1707 264 30 0 0 chr6 147102770 147102803 -2414234 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1707 324 0 0 0 chr6 147102803 147102838 -2414199 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1707 585 239 14 76 chr6 147102860 147102992 -2414045 + B1_Mur2 SINE Alu 13 138 -11 2 1707 261 0 0 0 chr6 147102992 147103021 -2414016 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1707 585 239 14 76 chr6 147103021 147103033 -2414004 + B1_Mur2 SINE Alu 139 148 -1 2 1707 346 225 14 14 chr6 147104614 147104686 -2412351 - MLT1A0 LTR MaLR 0 365 294 2 1707 493 281 23 8 chr6 147104691 147104820 -2412217 - RSINE1 SINE B4 -33 132 2 2 1707 2282 119 0 58 chr6 147105006 147105353 -2411684 - ORR1A2 LTR MaLR 0 327 1 2 1707 1211 173 74 0 chr6 147105717 147105752 -2411285 + Lx9 LINE L1 6606 6650 -994 2 1707 1107 0 0 0 chr6 147105752 147105875 -2411162 + (TTC)n Simple_repeat Simple_repeat 3 125 0 2 1707 1493 229 110 23 chr6 147105875 147106608 -2410429 + Lx9 LINE L1 6651 7634 -10 2 1707 26 74 0 0 chr6 147106665 147106719 -2410318 + AT_rich Low_complexity Low_complexity 1 54 0 2 1707 727 221 0 0 chr6 147106722 147106862 -2410175 - B1_Mur1 SINE Alu -9 140 1 2 1707 1308 79 0 0 chr6 147107159 147107337 -2409700 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2 1707 317 24 24 0 chr6 147107337 147107379 -2409658 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1707 504 0 0 0 chr6 147108266 147108322 -2408715 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1707 228 274 0 0 chr6 147108371 147108422 -2408615 - RSINE1 SINE B4 -96 69 19 2 1707 569 328 50 20 chr6 147108478 147108836 -2408201 - L1MA10 LINE L1 -29 6305 5937 2 1707 30 59 0 14 chr6 147108840 147108885 -2408152 + AT_rich Low_complexity Low_complexity 1 45 0 2 1707 906 177 120 0 chr6 147108885 147109077 -2407960 - B3 SINE B2 0 216 2 2 1707 30 59 0 14 chr6 147109077 147109100 -2407937 + AT_rich Low_complexity Low_complexity 1 23 0 2 1707 437 286 111 0 chr6 147109752 147109878 -2407159 - ID_B1 SINE B4 -79 145 6 2 1707 1209 182 25 0 chr6 147109957 147110160 -2406877 - B3 SINE B2 -7 209 2 2 1707 17019 46 8 1 chr6 147111590 147113675 -2403362 - L1_Mm LINE L1 -578 5305 3206 2 1707 457 194 11 21 chr6 147113845 147113940 -2403097 - RMER19B LTR ERVK -636 266 173 2 1707 945 200 88 27 chr6 147113971 147114233 -2402804 - RMER19C LTR ERVK -333 278 1 2 1707 564 299 48 34 chr6 147114395 147114472 -2402565 - B4A SINE B4 0 292 215 2 1707 1059 94 0 0 chr6 147114472 147114652 -2402385 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 1707 738 0 0 0 chr6 147114654 147114736 -2402301 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 2 1707 564 299 48 34 chr6 147114736 147114863 -2402174 - B4A SINE B4 -78 214 84 2 1707 3471 242 111 73 chr6 147114865 147116027 -2401010 - Lx8 LINE L1 0 7473 6268 2 1707 755 254 119 0 chr6 147116195 147116388 -2400649 + B3 SINE B2 1 216 0 2 1707 1049 118 0 12 chr6 147116864 147117035 -2400002 - B2_Mm2 SINE B2 -24 171 3 2 1707 21 36 0 0 chr6 147117048 147117076 -2399961 + AT_rich Low_complexity Low_complexity 1 28 0 2 1707 427 303 9 0 chr6 147117079 147117188 -2399849 - PB1D10 SINE Alu -6 111 2 2 1707 435 68 0 0 chr6 147117536 147117595 -2399442 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1707 603 231 138 11 chr6 147118416 147118604 -2398433 + ID_B1 SINE B4 5 216 -8 2 1707 555 240 169 57 chr6 147118713 147118975 -2398062 - RLTR10A LTR ERVK 0 411 104 2 1707 1892 213 14 27 chr6 147118994 147119481 -2397556 - RLTR45-int LTR ERVK -202 7042 6529 2 1707 1015 266 39 26 chr6 147119584 147119968 -2397069 - RLTR45-int LTR ERVK -1462 5080 4738 2 1707 987 334 45 40 chr6 147119984 147120937 -2396100 - RLTR45-int LTR ERVK -2041 4501 3544 2 1707 278 273 0 0 chr6 147121034 147121100 -2395937 - RLTR45-int LTR ERVK -2905 3576 3511 2 1707 336 275 47 47 chr6 147121146 147121295 -2395742 - RLTR45-int LTR ERVK -4149 2393 2245 2 1707 405 209 54 54 chr6 147121518 147121629 -2395408 - RLTR10-int LTR ERVK -1559 428 318 2 1707 536 245 179 53 chr6 147121645 147121891 -2395146 - RLTR10A LTR ERVK 0 411 135 2 1707 3524 20 5 0 chr6 147122977 147123371 -2393666 + MTA_Mm LTR MaLR 1 396 0 2 1707 3505 64 20 4 chr6 147123721 147124209 -2392828 + LTRIS2 LTR ERV1 69 564 0 2 1707 459 0 0 0 chr6 147124362 147124413 -2392624 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1707 468 0 0 0 chr6 147124413 147124464 -2392573 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 1707 264 59 0 0 chr6 147124527 147124561 -2392476 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1707 674 263 128 70 chr6 147124564 147124948 -2392089 - RMER10A LTR ERVL -26 416 11 2 1707 221 238 84 36 chr6 147124943 147125026 -2392011 - PB1D10 SINE Alu -4 113 27 2 1707 423 0 0 0 chr6 147125302 147125349 -2391688 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2 1707 192 237 0 0 chr6 147127686 147127724 -2389313 + L2b LINE L2 3240 3277 -98 2 1707 702 243 149 38 chr6 147127784 147127972 -2389065 - B4A SINE B4 -2 290 87 2 1707 357 24 0 0 chr6 147127972 147128014 -2389023 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1707 702 243 149 38 chr6 147128014 147128086 -2388951 - B4A SINE B4 -206 86 2 2 1707 406 286 64 13 chr6 147128099 147128255 -2388782 - L1MB2 LINE L1 -5 6166 6003 2 1707 245 290 140 0 chr6 147128264 147128371 -2388666 - B1F SINE Alu -27 122 1 2 1707 584 305 126 29 chr6 147128405 147128543 -2388494 - L1M2 LINE L1 -745 5398 5247 2 1707 1200 230 131 11 chr6 147128543 147128917 -2388120 + MTD LTR MaLR 1 419 0 2 1707 584 305 126 29 chr6 147128917 147129294 -2387743 - L1M2 LINE L1 -897 5246 4834 2 1707 782 280 123 27 chr6 147129294 147129782 -2387255 - L1_Mur3 LINE L1 -1570 4310 3776 2 1707 35 24 0 0 chr6 147129798 147129840 -2387197 + AT_rich Low_complexity Low_complexity 1 42 0 2 1707 743 210 166 0 chr6 147129877 147130074 -2386963 - RMER1B Other Other -868 198 1 2 1707 278 268 34 43 chr6 147130110 147130227 -2386810 + MTE2a LTR MaLR 46 161 -258 2 1707 232 310 0 0 chr6 147130235 147130293 -2386744 + (CATG)n Simple_repeat Simple_repeat 3 60 0 2 1707 611 284 29 34 chr6 147130359 147130563 -2386474 + MTE2a LTR MaLR 177 379 0 2 1707 212 242 43 43 chr6 147130636 147130774 -2386263 + A-rich Low_complexity Low_complexity 3 140 0 2 1707 1057 189 23 28 chr6 147130825 147131042 -2385995 + B3 SINE B2 1 216 0 2 1707 507 261 0 43 chr6 147131068 147131184 -2385853 + B1_Mur1 SINE Alu 30 140 -9 2 1707 266 0 29 0 chr6 147131263 147131297 -2385740 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 1707 1785 124 9 76 chr6 147132234 147132575 -2384462 - ORR1A3 LTR MaLR -8 318 1 2 1707 228 170 0 41 chr6 147133358 147133407 -2383630 + C-rich Low_complexity Low_complexity 5 51 0 2 1707 551 281 91 8 chr6 147133476 147133671 -2383366 - B3 SINE B2 -1 194 3 2 1707 237 162 0 0 chr6 147133708 147133745 -2383292 + A-rich Low_complexity Low_complexity 1 37 0 2 1707 460 301 22 15 chr6 147133745 147133880 -2383157 - B1F SINE Alu -13 136 1 2 1707 282 257 139 17 chr6 147134109 147134224 -2382813 - LTR16A LTR ERVL -9 442 314 2 1707 207 0 0 0 chr6 147134633 147134656 -2382381 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1707 325 346 124 9 chr6 147134748 147134981 -2382056 - L4 LINE RTE -937 1092 833 2 1707 376 335 68 23 chr6 147135366 147135586 -2381451 - Tigger5 DNA MER2_type -2175 231 2 2 1707 675 281 161 35 chr6 147136535 147137049 -2379988 - L1_Mur3 LINE L1 -1685 4458 3847 2 1707 460 244 6 46 chr6 147137081 147137238 -2379799 - RMER1B Other Other -14 1052 922 2 1707 1422 272 138 66 chr6 147137432 147138181 -2378856 - RMER1B Other Other -171 895 84 2 1707 315 0 0 0 chr6 147138181 147138216 -2378821 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1707 1422 272 138 66 chr6 147138216 147138301 -2378736 - RMER1B Other Other -983 83 2 2 1707 359 286 14 7 chr6 147138319 147138460 -2378577 - L1_Mur3 LINE L1 -2261 3882 3741 2 1707 562 282 39 44 chr6 147138474 147138656 -2378381 - B3A SINE B2 -16 182 2 2 1707 586 302 25 50 chr6 147138659 147138980 -2378057 - L1_Mur3 LINE L1 -2391 3752 3440 2 1707 717 239 0 0 chr6 147138983 147139163 -2377874 + T-rich Low_complexity Low_complexity 1 180 0 2 1707 289 163 0 0 chr6 147139163 147139206 -2377831 + polypyrimidine Low_complexity Low_complexity 64 106 0 2 1707 1182 68 0 0 chr6 147139206 147139352 -2377685 - B1_Mus2 SINE Alu 0 147 2 2 1707 2266 67 16 0 chr6 147139589 147139903 -2377134 - ORR1A2 LTR MaLR -8 319 1 2 1707 253 318 9 18 chr6 147140043 147140152 -2376885 + CT-rich Low_complexity Low_complexity 2 109 0 2 1707 337 288 152 0 chr6 147140152 147140277 -2376760 - B1F1 SINE Alu -5 144 1 2 1707 269 218 45 11 chr6 147140410 147140498 -2376539 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 2 1707 921 19 0 0 chr6 147140983 147141090 -2375947 + (TC)n Simple_repeat Simple_repeat 2 108 0 2 1707 1330 237 184 71 chr6 147141204 147141866 -2375171 + RMER19A LTR ERVK 1 737 0 2 1707 599 283 44 44 chr6 147142214 147142443 -2374594 + B4A SINE B4 2 230 -62 2 1707 409 97 14 14 chr6 147142486 147142559 -2374478 + (CATA)n Simple_repeat Simple_repeat 1 73 0 2 1707 511 54 43 11 chr6 147142610 147142703 -2374334 + (CA)n Simple_repeat Simple_repeat 2 97 0 2 1707 332 96 0 0 chr6 147142746 147142798 -2374239 + HAL1-3A_ME LINE L1 1976 2027 -831 2 1707 340 56 55 14 chr6 147142860 147142933 -2374104 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 1707 308 279 29 29 chr6 147142940 147143080 -2373957 + (CATATA)n Simple_repeat Simple_repeat 1 140 0 3 1707 788 268 63 0 chr6 147143514 147143704 -2373333 + B3 SINE B2 8 209 -7 3 1707 382 250 16 82 chr6 147143762 147143884 -2373153 + PB1D7 SINE Alu 1 114 -6 3 1707 245 342 139 4 chr6 147143907 147144136 -2372901 + MER2 DNA MER2_type 86 343 -2 3 1707 380 286 101 90 chr6 147144398 147144586 -2372451 + B3A SINE B2 1 190 -8 3 1707 21 0 0 0 chr6 147144710 147144731 -2372306 + AT_rich Low_complexity Low_complexity 1 21 0 3 1707 1205 259 46 47 chr6 147145600 147146001 -2371036 + MTD LTR MaLR 10 403 -16 3 1707 1079 97 18 0 chr6 147146083 147146248 -2370789 + (CATATA)n Simple_repeat Simple_repeat 5 172 0 3 1707 297 197 0 0 chr6 147146258 147146319 -2370718 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1707 2196 94 19 3 chr6 147146723 147147033 -2370004 - L1_Mus3 LINE L1 -5 6633 6319 3 1707 1926 214 81 40 chr6 147147050 147147556 -2369481 - RMER15 LTR ERVL -14 561 35 3 1707 917 205 119 4 chr6 147149840 147150075 -2366962 + Lx9 LINE L1 7375 7636 -8 3 1707 242 76 90 15 chr6 147150674 147150741 -2366296 + (TA)n Simple_repeat Simple_repeat 2 73 0 3 1707 426 284 182 0 chr6 147151209 147151413 -2365624 + MT2A LTR ERVL 244 487 -46 3 1707 402 57 0 0 chr6 147151413 147151466 -2365571 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1707 426 284 182 0 chr6 147151466 147151486 -2365551 + MT2A LTR ERVL 488 508 -25 3 1707 214 229 49 0 chr6 147151826 147151887 -2365150 - ID4_ SINE ID -5 78 15 3 1707 1376 214 81 6 chr6 147152152 147152499 -2364538 + ORR1D1 LTR MaLR 1 373 -1 3 1707 856 126 0 13 chr6 147152940 147153093 -2363944 + (TCCC)n Simple_repeat Simple_repeat 3 153 0 3 1707 476 252 9 0 chr6 147153561 147153668 -2363369 - RSINE1 SINE B4 -40 125 18 3 1707 237 250 0 15 chr6 147153737 147153802 -2363235 + ID_B1 SINE B4 135 198 -26 3 1707 222 263 0 0 chr6 147154130 147154187 -2362850 - ID4_ SINE ID -7 76 20 3 1707 21 0 0 0 chr6 147154583 147154604 -2362433 + AT_rich Low_complexity Low_complexity 1 21 0 3 1707 426 292 78 30 chr6 147154604 147154770 -2362267 - B3A SINE B2 -13 185 12 3 1707 1234 241 109 9 chr6 147155064 147155412 -2361625 + MTD LTR MaLR 35 417 -2 3 1707 1292 280 135 30 chr6 147155436 147156551 -2360486 - MTE-int LTR MaLR -39 1541 238 3 1707 2176 139 194 12 chr6 147157399 147157562 -2359475 - RMER4B LTR ERVK 0 585 384 3 1707 1919 91 143 0 chr6 147157562 147157848 -2359189 - ORR1A2 LTR MaLR 0 327 1 3 1707 2176 139 194 12 chr6 147157848 147158179 -2358858 - RMER4B LTR ERVK -202 383 1 3 1707 2588 105 83 9 chr6 147158241 147158421 -2358616 - RMER4A LTR ERVK 0 466 266 3 1707 189 0 0 0 chr6 147158421 147158442 -2358595 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 3 1707 2588 105 83 9 chr6 147158442 147158695 -2358342 - RMER4A LTR ERVK -201 265 1 3 1707 566 14 14 0 chr6 147158804 147158875 -2358162 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 1707 1099 261 80 24 chr6 147159438 147159775 -2357262 + ORR1E LTR MaLR 2 357 -2 3 1707 393 22 0 0 chr6 147159812 147159858 -2357179 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1707 489 276 31 0 chr6 147159858 147159985 -2357052 - ID_B1 SINE B4 -6 218 88 3 1707 212 295 103 0 chr6 147161006 147161084 -2355953 - PB1 SINE Alu -12 115 30 3 1707 191 263 112 50 chr6 147161137 147161217 -2355820 + MIR SINE MIR 62 146 -116 3 1707 2960 75 8 12 chr6 147161382 147161784 -2355253 + MTB LTR MaLR 1 400 0 3 1707 339 244 0 13 chr6 147162213 147162292 -2354745 - MTEb LTR MaLR -15 364 287 3 1707 245 263 219 0 chr6 147162853 147162967 -2354070 + MER21B LTR ERV1 614 752 -111 3 1707 408 180 45 0 chr6 147163108 147163197 -2353840 - ORR1D1 LTR MaLR 0 374 282 3 1707 813 197 186 0 chr6 147163199 147163387 -2353650 - URR1A DNA MER1_type -3 223 1 3 1707 671 96 10 0 chr6 147163580 147163684 -2353353 - ORR1B1 LTR MaLR -2 392 288 3 1707 2132 126 78 70 chr6 147163682 147164141 -2352896 - ORR1B1-int LTR MaLR -15 1494 1032 3 1707 1184 220 100 22 chr6 147164310 147164631 -2352406 - RLTR22_Mur LTR ERVK -1480 368 23 3 1707 486 0 0 0 chr6 147165053 147165107 -2351930 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1707 377 228 185 0 chr6 147165115 147165207 -2351830 + ID_B1 SINE B4 105 213 -11 3 1707 349 276 94 6 chr6 147165247 147165418 -2351619 + L1MC5 LINE L1 7709 7894 -67 3 1707 647 204 111 34 chr6 147165442 147165650 -2351387 + RMER1B Other Other 843 1066 0 3 1707 261 0 0 0 chr6 147166300 147166329 -2350708 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1707 315 0 0 0 chr6 147166329 147166363 -2350674 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1707 697 336 18 9 chr6 147167255 147167483 -2349554 - B4 SINE B4 -62 230 1 3 1707 251 257 57 150 chr6 147168855 147169056 -2347981 - L1MA4 LINE L1 -308 5992 5807 3 1707 748 205 13 20 chr6 147169056 147169205 -2347832 - B1_Mur3 SINE Alu 0 149 2 3 1707 251 257 57 150 chr6 147169205 147169250 -2347787 - L1MA4 LINE L1 -494 5806 5769 3 1707 762 200 0 0 chr6 147169261 147169406 -2347631 - B3 SINE B2 -7 209 65 3 1707 211 204 0 0 chr6 147169665 147169714 -2347323 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1707 371 181 28 0 chr6 147169765 147169837 -2347200 - B3A SINE B2 -124 74 1 3 1707 1005 290 99 39 chr6 147169854 147170753 -2346284 - L1MA4 LINE L1 -557 5743 4780 3 1707 1420 286 135 24 chr6 147170775 147171716 -2345321 - L1MA4 LINE L1 -2024 4119 3075 3 1707 378 0 0 0 chr6 147174501 147174543 -2342494 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1707 343 220 211 0 chr6 147174551 147174660 -2342377 - RSINE1 SINE B4 -31 134 3 3 1707 185 205 0 0 chr6 147174831 147174870 -2342167 - L2a LINE L2 -94 3332 3294 3 1707 498 279 21 14 chr6 147175142 147175154 -2341883 - ID_B1 SINE B4 0 224 213 3 1707 504 0 0 0 chr6 147175154 147175210 -2341827 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1707 498 274 22 13 chr6 147175210 147175356 -2341681 - ID_B1 SINE B4 -12 212 70 3 1707 25 0 0 0 chr6 147175721 147175746 -2341291 + AT_rich Low_complexity Low_complexity 1 25 0 3 1707 980 197 49 10 chr6 147176879 147177084 -2339953 + B3 SINE B2 1 213 -3 3 1707 248 93 47 0 chr6 147177342 147177385 -2339652 + (TATG)n Simple_repeat Simple_repeat 4 48 0 3 1707 781 279 92 64 chr6 147178289 147178603 -2338434 - MLT1A0 LTR MaLR 0 365 43 3 1707 1300 151 164 54 chr6 147178707 147179042 -2337995 - ORR1D1 LTR MaLR -2 372 1 3 1707 366 156 0 0 chr6 147179134 147179198 -2337839 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1707 183 188 0 0 chr6 147179232 147179280 -2337757 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1707 525 224 3 6 chr6 147179292 147179657 -2337380 + (TG)n Simple_repeat Simple_repeat 1 364 0 3 1707 2444 282 70 8 chr6 147179665 147180495 -2336542 - Lx9 LINE L1 -204 7440 6560 3 1707 675 266 5 43 chr6 147182278 147182289 -2334748 - B3 SINE B2 -38 178 168 3 1707 207 0 0 0 chr6 147182289 147182312 -2334725 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 3 1707 746 219 12 20 chr6 147182312 147182485 -2334552 - B3A SINE B2 -49 167 1 3 1707 341 278 90 28 chr6 147182664 147182875 -2334162 + L1M4 LINE L1 4939 5162 -984 3 1707 235 317 89 27 chr6 147183178 147183324 -2333713 + L1MC1 LINE L1 5846 6000 -333 3 1707 406 293 69 42 chr6 147183369 147183586 -2333451 + L1MC1 LINE L1 6110 6332 -1 3 1707 950 304 58 19 chr6 147184191 147184500 -2332537 - RLTR18B LTR ERVK 0 512 192 3 1707 417 323 46 64 chr6 147184564 147184845 -2332192 - RLTR18 LTR ERVK -336 280 5 3 1707 1599 27 0 0 chr6 147185099 147185551 -2331486 + (TCTA)n Simple_repeat Simple_repeat 1 452 0 3 1707 257 232 36 0 chr6 147185559 147185615 -2331422 - B1F SINE Alu -90 59 2 3 1707 381 281 99 30 chr6 147186089 147186291 -2330746 + L1M4 LINE L1 5406 5621 -557 3 1707 337 279 18 55 chr6 147186307 147186417 -2330620 + B1F1 SINE Alu 28 133 -16 3 1707 719 196 15 29 chr6 147186857 147186994 -2330043 + B1_Mur1 SINE Alu 2 136 -13 3 1707 617 265 67 104 chr6 147187032 147187476 -2329561 + L1MB2 LINE L1 5165 5605 -573 3 1707 1139 283 26 87 chr6 147187535 147187742 -2329295 + MTE2a LTR MaLR 4 189 -190 3 1707 720 35 0 0 chr6 147187742 147187829 -2329208 + (CAAG)n Simple_repeat Simple_repeat 4 90 0 3 1707 1139 283 26 87 chr6 147187829 147188012 -2329025 + MTE2a LTR MaLR 190 370 -9 3 1707 890 259 103 12 chr6 147188028 147188348 -2328689 + L1MB2 LINE L1 5643 5991 -180 3 1707 494 70 0 14 chr6 147188770 147188842 -2328195 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1707 215 254 17 0 chr6 147189212 147189271 -2327766 + ID4 SINE ID 1 60 -23 3 1707 183 302 0 0 chr6 147189949 147190012 -2327025 + L4 LINE RTE 1951 2013 -16 3 1707 704 199 0 58 chr6 147191671 147191826 -2325211 - B1_Mur1 SINE Alu -2 147 2 3 1707 27 29 0 0 chr6 147191836 147191870 -2325167 + AT_rich Low_complexity Low_complexity 1 34 0 3 1707 234 0 0 0 chr6 147191880 147191906 -2325131 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1707 456 305 327 54 chr6 147191907 147192349 -2324688 - Lx8 LINE L1 -34 7439 6878 3 1707 246 186 0 0 chr6 147192412 147192455 -2324582 - MLT1K LTR MaLR -358 237 195 3 1707 422 50 33 0 chr6 147193260 147193320 -2323717 + (TATG)n Simple_repeat Simple_repeat 2 63 0 3 1707 320 287 219 0 chr6 147193341 147193505 -2323532 - B3 SINE B2 -15 201 2 3 1707 694 270 0 30 chr6 147193544 147193712 -2323325 + RSINE1 SINE B4 3 165 0 3 1707 23 33 0 0 chr6 147193736 147193766 -2323271 + AT_rich Low_complexity Low_complexity 1 30 0 3 1708 450 0 0 0 chr6 147195459 147195509 -2321528 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1708 442 241 11 61 chr6 147195530 147195711 -2321326 + (CAGAGA)n Simple_repeat Simple_repeat 2 173 0 3 1708 351 248 0 0 chr6 147195749 147195854 -2321183 + (CA)n Simple_repeat Simple_repeat 2 106 0 3 1708 402 94 0 0 chr6 147195868 147195932 -2321105 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1708 900 154 0 0 chr6 147198953 147199109 -2317928 + CT-rich Low_complexity Low_complexity 1 156 0 3 1708 543 230 93 23 chr6 147199121 147199250 -2317787 - B1_Mur2 SINE Alu -11 138 1 3 1708 759 162 22 0 chr6 147199848 147199984 -2317053 + B1_Mur4 SINE Alu 6 144 -6 3 1708 195 42 0 0 chr6 147199985 147200009 -2317028 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 3 1708 244 267 50 0 chr6 147201779 147201839 -2315198 - PB1D7 SINE Alu -13 107 45 4 1708 851 106 36 12 chr6 147202605 147202854 -2314183 + (TG)n Simple_repeat Simple_repeat 1 255 0 4 1708 726 44 0 0 chr6 147203735 147203825 -2313212 + (GA)n Simple_repeat Simple_repeat 1 90 0 4 1708 378 270 11 0 chr6 147205001 147205096 -2311941 + PB1D7 SINE Alu 10 105 -15 4 1708 532 205 23 6 chr6 147205113 147205285 -2311752 + GA-rich Low_complexity Low_complexity 4 178 0 4 1708 23 33 0 0 chr6 147206173 147206203 -2310834 + AT_rich Low_complexity Low_complexity 1 30 0 4 1708 531 0 0 0 chr6 147206371 147206430 -2310607 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1708 244 320 2 0 chr6 147206731 147206813 -2310224 + PB1D7 SINE Alu 11 93 -56 4 1708 217 240 0 20 chr6 147206902 147206953 -2310084 - PB1D10 SINE Alu -58 59 10 4 1708 207 254 34 0 chr6 147207170 147207229 -2309808 - MIRm SINE MIR -125 151 91 4 1708 4981 48 2 3 chr6 147207616 147208222 -2308815 + L1Md_F2 LINE L1 5978 6582 0 4 1708 513 115 0 0 chr6 147211355 147211451 -2305586 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 1708 423 0 0 0 chr6 147213279 147213326 -2303711 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1708 267 175 0 0 chr6 147215582 147215639 -2301398 + GA-rich Low_complexity Low_complexity 3 59 0 4 1708 300 239 14 0 chr6 147218069 147218140 -2298897 + RSINE1 SINE B4 3 74 -91 4 1708 285 297 30 116 chr6 147218416 147218580 -2298457 - B4A SINE B4 -136 156 7 4 1708 333 256 12 0 chr6 147218668 147218754 -2298283 - B4 SINE B4 -192 100 14 4 1708 781 279 79 36 chr6 147218929 147219208 -2297829 - B4A SINE B4 -1 291 1 4 1708 225 179 123 18 chr6 147219322 147219379 -2297658 - tRNA-Ala-GCY_ tRNA tRNA -10 65 3 4 1708 21 0 0 0 chr6 147219454 147219475 -2297562 + AT_rich Low_complexity Low_complexity 1 21 0 4 1708 1026 54 77 0 chr6 147220036 147220166 -2296871 + B1_Mm SINE Alu 1 140 -7 4 1708 427 17 33 0 chr6 147220170 147220230 -2296807 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 4 1708 477 50 0 0 chr6 147220230 147220289 -2296748 + (GA)n Simple_repeat Simple_repeat 2 61 0 4 1708 212 122 49 0 chr6 147221226 147221267 -2295770 + GA-rich Low_complexity Low_complexity 2 44 0 4 1708 468 287 0 0 chr6 147221336 147221510 -2295527 + (CA)n Simple_repeat Simple_repeat 1 174 0 4 1708 216 266 50 12 chr6 147223137 147223217 -2293820 + GA-rich Low_complexity Low_complexity 5 87 0 4 1708 26 0 0 0 chr6 147223300 147223326 -2293711 + AT_rich Low_complexity Low_complexity 1 26 0 4 1708 268 131 118 12 chr6 147223423 147223508 -2293529 + (ATGTG)n Simple_repeat Simple_repeat 2 95 0 4 1708 258 197 32 32 chr6 147223693 147223756 -2293281 + PB1D10 SINE Alu 54 116 -1 4 1708 22 35 0 0 chr6 147223845 147223874 -2293163 + AT_rich Low_complexity Low_complexity 1 29 0 4 1708 330 257 54 27 chr6 147224031 147224143 -2292894 - PB1D10 SINE Alu 0 117 3 4 1708 470 158 62 12 chr6 147224231 147224391 -2292646 + CT-rich Low_complexity Low_complexity 6 173 0 4 1708 316 126 22 33 chr6 147225007 147225097 -2291940 + G-rich Low_complexity Low_complexity 6 94 0 4 1708 1236 257 65 15 chr6 147227021 147227357 -2289680 + ORR1E LTR MaLR 5 357 -2 4 1708 419 236 7 80 chr6 147227438 147227452 -2289585 - ID_B1 SINE B4 -41 183 150 4 1708 661 89 0 0 chr6 147227452 147227542 -2289495 - B1_Mus1 SINE Alu -58 90 1 4 1708 419 236 7 80 chr6 147227542 147227576 -2289461 - ID_B1 SINE B4 -41 149 56 4 1708 267 299 58 75 chr6 147229315 147229503 -2287534 + MLT1L LTR MaLR 98 282 -328 4 1708 450 256 60 8 chr6 147229686 147229820 -2287217 + MTC LTR MaLR 6 146 -275 4 1708 1077 285 24 32 chr6 147230392 147230769 -2286268 + MTE2b LTR MaLR 2 375 -4 4 1708 2418 284 104 45 chr6 147231276 147233024 -2284013 + L1MA10 LINE L1 3924 5784 -405 4 1708 963 139 271 40 chr6 147233042 147233340 -2283697 + Lx3B LINE L1 6607 6973 0 4 1708 650 278 34 97 chr6 147233366 147233797 -2283240 + L1MA10 LINE L1 5773 6190 -144 4 1708 672 285 16 22 chr6 147234790 147234935 -2282102 + B3A SINE B2 1 146 -52 4 1708 360 0 0 0 chr6 147234935 147234975 -2282062 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1708 672 285 16 22 chr6 147234975 147235012 -2282025 + B3A SINE B2 147 182 -16 4 1708 252 0 0 0 chr6 147235092 147235120 -2281917 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1708 465 302 73 7 chr6 147235320 147235470 -2281567 - MER5A1 DNA MER1_type -6 160 1 4 1708 318 218 130 13 chr6 147235591 147235685 -2281352 - PB1D10 SINE Alu -5 112 10 4 1708 320 93 0 53 chr6 147236000 147236057 -2280980 + HAL1-3A_ME LINE L1 1958 2011 -847 4 1708 191 220 0 33 chr6 147236059 147236120 -2280917 + (CATA)n Simple_repeat Simple_repeat 4 62 0 4 1708 347 224 0 130 chr6 147236216 147236339 -2280698 - RMER20B LTR ERVK -59 568 462 4 1708 850 234 77 107 chr6 147236401 147236528 -2280509 - RMER20B LTR ERVK -14 613 477 4 1708 204 40 0 0 chr6 147236528 147236553 -2280484 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4 1708 850 234 77 107 chr6 147236553 147236817 -2280220 - RMER20B LTR ERVK -151 476 235 4 1708 326 328 0 16 chr6 147236868 147236992 -2280045 - ID_B1 SINE B4 -23 201 80 4 1708 528 40 0 26 chr6 147237563 147237641 -2279396 - L1Md_F3 LINE L1 -14 6570 6495 4 1708 317 316 29 7 chr6 147238674 147238814 -2278223 - MIR SINE MIR -111 151 9 4 1708 477 0 0 0 chr6 147239013 147239066 -2277971 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1708 690 254 40 5 chr6 147239096 147239294 -2277743 + RMER15 LTR ERVL 371 575 0 4 1708 816 254 10 45 chr6 147239321 147239523 -2277514 + B3A SINE B2 1 195 -3 4 1708 24 0 0 0 chr6 147241139 147241163 -2275874 + AT_rich Low_complexity Low_complexity 1 24 0 4 1708 280 274 63 45 chr6 147242340 147242451 -2274586 - B4A SINE B4 -56 236 124 4 1708 637 88 0 19 chr6 147242451 147242555 -2274482 + (TCCC)n Simple_repeat Simple_repeat 4 105 0 4 1708 582 226 43 7 chr6 147242555 147242693 -2274344 - B4A SINE B4 -148 144 2 4 1708 383 0 0 21 chr6 147243126 147243174 -2273863 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 4 1708 520 301 24 58 chr6 147244097 147244425 -2272612 - MER33 DNA MER1_type -1 323 7 4 1708 246 260 93 10 chr6 147245589 147245686 -2271351 + RLTR11A LTR ERVK 118 222 -306 4 1708 756 228 115 27 chr6 147246358 147246619 -2270418 - B4 SINE B4 -4 288 5 4 1708 247 329 0 0 chr6 147247168 147247241 -2269796 - ID4 SINE ID -9 74 2 4 1708 219 69 0 0 chr6 147247460 147247489 -2269548 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1708 182 207 17 0 chr6 147247911 147247969 -2269068 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 4 1708 544 259 0 22 chr6 147249987 147250125 -2266912 + B1_Mur1 SINE Alu 3 137 -12 4 1708 882 242 56 0 chr6 147250380 147250578 -2266459 + B3 SINE B2 1 209 -7 4 1708 400 256 36 36 chr6 147250760 147250898 -2266139 - ID_B1 SINE B4 0 224 87 4 1708 2707 34 2 179 chr6 147251953 147252422 -2264615 + RLTR10 LTR ERVK 1 386 -4 4 1708 16124 32 17 35 chr6 147252430 147254447 -2262590 + RLTR10-int LTR ERVK 3 1984 -3 4 1708 2707 34 2 179 chr6 147254449 147254918 -2262119 + RLTR10 LTR ERVK 1 386 -4 4 1708 533 343 47 23 chr6 147255174 147255389 -2261648 + B4 SINE B4 4 223 -69 4 1708 964 268 40 40 chr6 147255427 147255730 -2261307 - Lx8 LINE L1 -372 7101 6799 4 1708 712 275 48 24 chr6 147255732 147255982 -2261055 - Lx8 LINE L1 -811 6662 6407 4 1708 273 281 73 73 chr6 147256479 147256644 -2260393 + L1MB7 LINE L1 6009 6173 -11 4 1708 423 246 114 52 chr6 147256927 147257120 -2259917 - L1MB7 LINE L1 -11 6173 5969 4 1708 254 234 182 0 chr6 147257485 147257562 -2259475 + Lx8 LINE L1 6703 6793 -680 4 1708 1742 262 97 33 chr6 147257577 147258240 -2258797 + Lx8 LINE L1 6741 7445 -28 4 1708 445 254 26 0 chr6 147258241 147258355 -2258682 + PB1D9 SINE Alu 1 117 -3 4 1708 22 0 0 0 chr6 147258372 147258394 -2258643 + AT_rich Low_complexity Low_complexity 1 22 0 4 1708 718 304 44 68 chr6 147258555 147259053 -2257984 - MLT1H LTR MaLR -23 526 41 4 1708 452 233 29 10 chr6 147261561 147261665 -2255372 - PB1D10 SINE Alu 0 117 12 4 1708 251 254 14 0 chr6 147261952 147262023 -2255014 + L1_Mm LINE L1 4749 4820 -1063 4 1708 712 287 109 57 chr6 147262017 147263071 -2253966 + L1MA4 LINE L1 4877 6027 -270 4 1708 390 278 10 0 chr6 147263491 147263588 -2253449 + B1F SINE Alu 1 98 -51 4 1708 495 0 0 0 chr6 147264178 147264233 -2252804 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1708 372 282 9 26 chr6 147264251 147264364 -2252673 - B1F SINE Alu -2 147 37 4 1708 492 18 0 0 chr6 147267545 147267602 -2249435 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1708 297 0 0 0 chr6 147267602 147267634 -2249403 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1708 1775 193 34 90 chr6 147267973 147268190 -2248847 - RMER10A LTR ERVL -1 441 257 4 1708 567 0 0 0 chr6 147268190 147268253 -2248784 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 1708 1775 193 34 90 chr6 147268253 147268502 -2248535 - RMER10A LTR ERVL -186 256 1 4 1708 205 347 53 0 chr6 147268764 147268859 -2248178 + MIR SINE MIR 26 125 -137 4 1708 572 0 15 0 chr6 147268996 147269064 -2247973 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1708 642 252 61 0 chr6 147269074 147269221 -2247816 - B3A SINE B2 -38 160 5 4 1708 432 0 0 0 chr6 147269229 147269277 -2247760 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1708 422 244 38 105 chr6 147269298 147269431 -2247606 + B1F SINE Alu 1 124 -25 4 1708 24 67 0 0 chr6 147270080 147270125 -2246912 + AT_rich Low_complexity Low_complexity 1 45 0 4 1708 231 114 0 0 chr6 147270225 147270260 -2246777 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 4 1708 838 184 0 11 chr6 147270260 147270441 -2246596 + CT-rich Low_complexity Low_complexity 1 179 0 4 1708 414 243 93 9 chr6 147270461 147270569 -2246468 - PB1D10 SINE Alu 0 117 1 4 1708 4663 60 2 8 chr6 147272038 147272624 -2244413 + L1_Mus1 LINE L1 5983 6564 -3 4 1708 449 307 0 17 chr6 147272873 147272989 -2244048 - MER81 DNA AcHobo 0 114 1 5 1708 207 0 0 0 chr6 147273320 147273343 -2243694 + (C)n Simple_repeat Simple_repeat 1 23 0 5 1708 211 196 0 0 chr6 147273904 147273950 -2243087 + T-rich Low_complexity Low_complexity 1 46 0 5 1708 2543 112 53 3 chr6 147274047 147274422 -2242615 - ORR1B1 LTR MaLR 0 394 1 5 1708 1145 278 51 11 chr6 147274561 147274935 -2242102 - MLT1B LTR MaLR -1 389 1 5 1708 433 339 17 0 chr6 147275538 147275718 -2241319 - Tigger16b DNA Tigger -1 336 154 5 1708 282 362 57 0 chr6 147275851 147275992 -2241045 + LTR81A LTR ERV1? 94 242 -1108 5 1708 185 130 0 42 chr6 147276263 147276311 -2240726 + T-rich Low_complexity Low_complexity 3 48 0 5 1708 304 236 0 14 chr6 147276731 147276804 -2240233 - ID4 SINE ID -10 73 2 5 1708 315 256 103 86 chr6 147280231 147280406 -2236631 + L1M5 LINE L1 5528 5705 -419 5 1708 195 69 0 0 chr6 147282029 147282058 -2234979 + (TTTTTA)n Simple_repeat Simple_repeat 3 31 0 5 1708 479 289 0 8 chr6 147282370 147282492 -2234545 + B1F SINE Alu 21 141 -8 5 1708 309 26 0 0 chr6 147282493 147282531 -2234506 + (CATA)n Simple_repeat Simple_repeat 3 40 0 5 1708 22 0 0 0 chr6 147283108 147283130 -2233907 + AT_rich Low_complexity Low_complexity 1 22 0 5 1708 268 353 10 19 chr6 147283130 147283234 -2233803 - PB1D10 SINE Alu -2 115 13 5 1708 1100 238 95 4 chr6 147285661 147285923 -2231114 + B4A SINE B4 5 290 -2 5 1708 1973 194 64 35 chr6 147286298 147286784 -2230253 + Lx7 LINE L1 7197 7696 0 5 1708 1143 93 0 0 chr6 147287799 147287961 -2229076 + (TTCC)n Simple_repeat Simple_repeat 3 164 0 5 1708 201 309 0 102 chr6 147288011 147288119 -2228918 + L2a LINE L2 3330 3426 0 5 1708 719 279 143 39 chr6 147288521 147288639 -2228398 - MTD LTR MaLR -14 405 264 5 1708 4961 54 2 3 chr6 147288639 147289252 -2227785 - L1Md_F2 LINE L1 -12 6570 5959 5 1708 719 279 143 39 chr6 147289252 147289469 -2227568 - MTD LTR MaLR -156 263 35 5 1708 1620 4 0 25 chr6 147290056 147290331 -2226706 + (TCTCC)n Simple_repeat Simple_repeat 1 267 0 5 1708 203 294 0 0 chr6 147290915 147291000 -2226037 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 5 1708 543 276 148 11 chr6 147291506 147291779 -2225258 + B4A SINE B4 4 292 0 5 1708 277 204 0 0 chr6 147293010 147293064 -2223973 - L1MC4 LINE L1 -17 8025 7972 5 1708 621 218 49 7 chr6 147293933 147294076 -2222961 - B1F2 SINE Alu 0 149 1 5 1708 180 179 0 0 chr6 147294259 147294298 -2222739 + (CATG)n Simple_repeat Simple_repeat 4 42 0 5 1708 182 293 0 33 chr6 147294690 147294750 -2222287 - MIRc SINE MIR -181 87 30 5 1708 306 194 13 53 chr6 147295731 147295807 -2221230 - MADE2 DNA Mariner -7 73 1 5 1708 253 294 62 50 chr6 147295919 147296080 -2220957 + RSINE1 SINE B4 3 165 0 5 1708 216 179 0 0 chr6 147296082 147296121 -2220916 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1708 529 303 0 0 chr6 147296271 147296416 -2220621 - B1F SINE Alu 0 149 5 5 1708 455 235 10 0 chr6 147299342 147299444 -2217593 - MTEa LTR MaLR -14 365 263 5 1708 724 262 62 104 chr6 147299873 147300209 -2216828 + MLT1E LTR MaLR 307 628 -25 5 1708 261 267 65 28 chr6 147300242 147300350 -2216687 - L1M3 LINE L1 -2621 3519 3408 5 1708 266 235 83 36 chr6 147300870 147300954 -2216083 - MTEb LTR MaLR -28 351 264 5 1708 363 227 163 8 chr6 147301420 147301549 -2215488 - ERVL-E-int LTR ERVL -2925 2742 2594 5 1708 464 355 14 0 chr6 147301682 147301823 -2215214 + RSINE1 SINE B4 3 145 -20 5 1708 271 353 99 5 chr6 147301863 147302065 -2214972 - ERVL-E-int LTR ERVL -3226 2441 2221 5 1708 695 288 44 5 chr6 147302542 147302748 -2214289 + ID_B1 SINE B4 4 217 -7 5 1708 484 291 48 18 chr6 147303305 147303473 -2213564 - MER34A LTR ERV1 -396 175 3 5 1708 572 216 68 44 chr6 147304607 147304809 -2212228 + B3A SINE B2 9 214 -2 5 1708 578 41 0 0 chr6 147304864 147304937 -2212100 + L1_Mus2 LINE L1 6494 6566 0 5 1708 214 366 56 34 chr6 147305993 147306171 -2210866 + MIRc SINE MIR 6 187 -81 5 1708 909 227 75 49 chr6 147306411 147306717 -2210320 - MTEa LTR MaLR -10 369 18 5 1708 234 0 0 0 chr6 147307140 147307166 -2209871 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 1708 723 251 130 22 chr6 147308217 147308486 -2208551 + ORR1E LTR MaLR 56 353 -6 5 1708 381 212 17 8 chr6 147308898 147309017 -2208020 + CT-rich Low_complexity Low_complexity 1 120 0 5 1708 1158 261 131 31 chr6 147310455 147310555 -2206482 - Lx9 LINE L1 -7 7637 7517 5 1708 498 17 0 0 chr6 147310555 147310614 -2206423 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 5 1708 1158 261 131 31 chr6 147310614 147310964 -2206073 - Lx9 LINE L1 -128 7516 7143 5 1708 207 114 0 0 chr6 147312693 147312728 -2204309 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1708 399 262 115 0 chr6 147313492 147313614 -2203423 + MIR SINE MIR 10 145 -117 5 1708 812 286 22 4 chr6 147313741 147313966 -2203071 + B4A SINE B4 1 229 -63 5 1708 323 274 68 34 chr6 147313988 147314105 -2202932 + RSINE1 SINE B4 45 165 0 5 1708 222 250 0 0 chr6 147314136 147314208 -2202829 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1708 1165 56 0 0 chr6 147314587 147314731 -2202306 - B1_Mus2 SINE Alu -2 145 2 5 1708 699 12 0 0 chr6 147314803 147314883 -2202154 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 1708 237 184 0 20 chr6 147315065 147315115 -2201922 + PB1D7 SINE Alu 70 118 -2 5 1708 261 339 52 41 chr6 147315990 147316184 -2200853 + MLT1J-int LTR MaLR 998 1193 -194 5 1708 431 314 22 0 chr6 147316432 147316569 -2200468 - B1F1 SINE Alu -8 141 2 5 1708 495 0 0 0 chr6 147317156 147317211 -2199826 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1708 513 0 0 0 chr6 147317211 147317267 -2199770 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1708 546 314 64 75 chr6 147318475 147318833 -2198204 + MTEa LTR MaLR 18 371 -8 5 1708 765 182 0 21 chr6 147323157 147323297 -2193740 + B1_Mur2 SINE Alu 7 143 -6 5 1708 697 227 0 0 chr6 147323884 147324012 -2193025 + B1_Mur1 SINE Alu 17 144 -5 5 1708 1138 239 21 25 chr6 147324121 147324404 -2192633 + B4A SINE B4 9 290 -2 5 1708 468 86 0 0 chr6 147324404 147324474 -2192563 + (CA)n Simple_repeat Simple_repeat 2 71 0 5 1708 447 239 53 23 chr6 147324663 147324796 -2192241 - B1F1 SINE Alu 0 149 13 5 1709 182 191 0 21 chr6 147327225 147327273 -2189764 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1709 806 243 68 78 chr6 147327275 147327570 -2189467 - B4A SINE B4 0 292 1 5 1709 328 250 36 0 chr6 147328037 147328121 -2188916 - PB1D7 SINE Alu 0 120 34 5 1709 527 292 68 78 chr6 147328271 147328578 -2188459 + B4 SINE B4 6 281 -11 5 1709 432 258 268 9 chr6 147331189 147331413 -2185624 + MER2 DNA MER2_type 1 282 -63 5 1709 468 0 0 0 chr6 147331482 147331534 -2185503 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1709 492 132 0 0 chr6 147331553 147331636 -2185401 + (GGA)n Simple_repeat Simple_repeat 3 85 0 5 1709 2175 105 12 24 chr6 147331977 147332309 -2184728 - ORR1A4 LTR MaLR -1 328 1 5 1709 1135 72 0 0 chr6 147332799 147332937 -2184100 - B1_Mus2 SINE Alu -9 138 1 5 1709 549 253 143 12 chr6 147332974 147333142 -2183895 + ID_B1 SINE B4 2 191 -33 5 1709 787 264 114 16 chr6 147333882 147334198 -2182839 - MLT2B4 LTR ERVL -193 363 17 5 1709 488 311 96 69 chr6 147334248 147335244 -2181793 + L1M5 LINE L1 3997 5019 -1127 5 1709 24 32 0 0 chr6 147335884 147335915 -2181122 + AT_rich Low_complexity Low_complexity 1 31 0 5 1709 840 274 13 27 chr6 147335961 147336186 -2180851 + B4 SINE B4 2 223 -69 5 1709 248 111 19 0 chr6 147336186 147336240 -2180797 + (CAAA)n Simple_repeat Simple_repeat 4 58 0 5 1709 309 231 0 93 chr6 147336240 147336326 -2180711 + B4 SINE B4 215 292 0 5 1709 207 0 0 0 chr6 147339902 147339925 -2177112 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1709 380 19 39 0 chr6 147340820 147340872 -2176165 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1709 367 256 66 116 chr6 147341081 147341262 -2175775 - B3A SINE B2 0 198 27 5 1709 325 240 115 0 chr6 147343766 147343862 -2173175 + MER34 LTR ERV1 365 471 -71 5 1709 806 158 6 22 chr6 147344224 147344264 -2172773 + polypurine Low_complexity Low_complexity 1 40 0 5 1709 1284 89 0 0 chr6 147344264 147344444 -2172593 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 1709 806 158 6 22 chr6 147344444 147344584 -2172453 + polypurine Low_complexity Low_complexity 41 178 0 5 1709 282 106 0 0 chr6 147344592 147344639 -2172398 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 5 1709 350 217 54 76 chr6 147344848 147344989 -2172048 - B3A SINE B2 0 216 86 5 1709 753 70 0 0 chr6 147345241 147345341 -2171696 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 5 1709 1287 65 6 25 chr6 147345341 147345716 -2171321 + (TTTC)n Simple_repeat Simple_repeat 1 367 0 5 1709 244 331 93 52 chr6 147346263 147346435 -2170602 - MIRb SINE MIR -72 196 18 5 1709 472 331 79 32 chr6 147347149 147347427 -2169610 + B4A SINE B4 1 291 -1 5 1709 226 170 0 86 chr6 147347462 147347520 -2169517 + RLTR25A LTR ERVK 520 572 -531 5 1709 624 39 0 0 chr6 147347478 147347556 -2169481 + B1_Mus2 SINE Alu 57 134 -13 5 1709 189 74 0 0 chr6 147347558 147347585 -2169452 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1709 186 281 31 15 chr6 147347749 147347814 -2169223 + MIRc SINE MIR 194 259 -9 5 1709 381 256 62 8 chr6 147349906 147350036 -2167001 + MIR SINE MIR 31 167 -95 5 1709 322 252 75 0 chr6 147350337 147350444 -2166593 - PB1D10 SINE Alu 0 117 3 6 1709 380 304 35 2 chr6 147350444 147350504 -2166533 - ID SINE ID -139 85 24 6 1709 264 233 50 0 chr6 147350682 147350742 -2166295 + tRNA-Ala-GCA tRNA tRNA 5 67 -8 6 1709 285 29 0 0 chr6 147350759 147350793 -2166244 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1709 288 53 0 0 chr6 147350793 147350831 -2166206 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1709 305 223 137 59 chr6 147352807 147352908 -2164129 + PB1D10 SINE Alu 1 107 -10 6 1709 561 214 0 25 chr6 147354073 147354193 -2162844 - ID_B1 SINE B4 -8 216 100 6 1709 499 248 45 0 chr6 147354250 147354383 -2162654 - ID_B1 SINE B4 0 224 86 6 1709 314 186 15 46 chr6 147354672 147354802 -2162235 + CT-rich Low_complexity Low_complexity 2 127 0 6 1709 281 214 0 0 chr6 147354869 147354925 -2162112 - HAL1 LINE L1 -395 2112 2057 6 1709 719 320 128 11 chr6 147355196 147355547 -2161490 + Tigger7 DNA MER2_type 40 431 -2060 6 1709 30 59 0 0 chr6 147356443 147356494 -2160543 + AT_rich Low_complexity Low_complexity 1 51 0 6 1709 222 331 157 8 chr6 147356757 147356778 -2160259 - B4A SINE B4 -51 241 88 6 1709 442 321 0 9 chr6 147356778 147356891 -2160146 - PB1D7 SINE Alu -6 114 3 6 1709 1259 164 33 0 chr6 147356952 147357166 -2159871 + URR1B DNA MER1_type 5 225 0 6 1709 8428 138 24 12 chr6 147357176 147359570 -2157467 + Lx3C LINE L1 4549 6975 -1 6 1709 216 261 15 0 chr6 147359570 147359635 -2157402 + (ATGGTG)n Simple_repeat Simple_repeat 5 70 0 6 1709 414 0 0 0 chr6 147359635 147359681 -2157356 + (GGA)n Simple_repeat Simple_repeat 1 46 0 6 1709 1181 231 107 19 chr6 147359733 147360051 -2156986 - ORR1E LTR MaLR -5 354 9 6 1709 256 233 83 0 chr6 147360778 147360838 -2156199 - ID4_ SINE ID -18 65 1 6 1709 290 367 141 12 chr6 147361365 147361685 -2155352 - MLT1A0 LTR MaLR -4 361 1 6 1709 585 327 36 0 chr6 147361903 147362071 -2154966 + B3A SINE B2 1 174 -24 6 1709 387 0 0 0 chr6 147362071 147362114 -2154923 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1709 310 294 67 77 chr6 147362114 147362140 -2154897 + B2_Mm2 SINE B2 167 192 -3 6 1709 671 235 47 0 chr6 147362552 147362701 -2154336 - RSINE1 SINE B4 -2 163 8 6 1709 545 93 40 48 chr6 147363187 147363440 -2153597 + (TCTA)n Simple_repeat Simple_repeat 1 250 0 6 1709 1139 281 47 55 chr6 147363730 147364133 -2152904 - Lx8 LINE L1 -430 7043 6644 6 1709 506 328 0 16 chr6 147364168 147364292 -2152745 - B1F SINE Alu -27 122 1 6 1709 2301 221 36 32 chr6 147364746 147364854 -2152183 - RLTR20B1 LTR ERVK 0 563 458 6 1709 1569 23 0 0 chr6 147364854 147365028 -2152009 - B2_Mm1a SINE B2 -18 175 2 6 1709 2301 221 36 32 chr6 147365028 147365480 -2151557 - RLTR20B1 LTR ERVK -106 457 1 6 1709 285 29 0 0 chr6 147366013 147366047 -2150990 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 6 1709 195 42 0 0 chr6 147366812 147366836 -2150201 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1709 676 263 13 0 chr6 147367651 147367803 -2149234 + B3A SINE B2 1 154 -44 6 1709 1059 88 4 22 chr6 147367803 147368034 -2149003 + (CA)n Simple_repeat Simple_repeat 1 226 0 6 1709 233 220 0 33 chr6 147368038 147368099 -2148938 + G-rich Low_complexity Low_complexity 4 62 0 6 1709 188 133 44 0 chr6 147368099 147368144 -2148893 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 6 1709 721 181 0 35 chr6 147369079 147369222 -2147815 + B1_Mur2 SINE Alu 1 138 -11 6 1709 228 191 47 16 chr6 147369228 147369292 -2147745 + A-rich Low_complexity Low_complexity 4 69 0 6 1709 225 259 11 45 chr6 147369370 147369459 -2147578 + CT-rich Low_complexity Low_complexity 3 88 0 6 1709 751 307 91 8 chr6 147370242 147370495 -2146542 + B4A SINE B4 2 275 -17 6 1709 555 16 0 0 chr6 147370512 147370576 -2146461 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1709 390 266 31 0 chr6 147370937 147371065 -2145972 - MTEb LTR MaLR -12 367 236 6 1709 478 300 158 50 chr6 147372278 147372538 -2144499 - B4 SINE B4 -2 290 3 6 1709 276 149 0 0 chr6 147374222 147374269 -2142768 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 6 1709 279 0 0 0 chr6 147374864 147374895 -2142142 + (TTA)n Simple_repeat Simple_repeat 2 32 0 6 1709 771 240 5 32 chr6 147374899 147375084 -2141953 - B3A SINE B2 -16 182 3 6 1709 472 171 29 0 chr6 147376907 147377012 -2140025 + GA-rich Low_complexity Low_complexity 2 109 0 6 1709 3091 40 0 11 chr6 147377698 147378078 -2138959 + L1Md_F3 LINE L1 6208 6583 -1 6 1709 385 234 13 13 chr6 147378125 147378203 -2138834 - ID4 SINE ID -2 81 4 6 1709 233 303 13 38 chr6 147378385 147378464 -2138573 - PB1D10 SINE Alu -30 87 11 6 1709 739 48 0 0 chr6 147378656 147378761 -2138276 + L1_Mus4 LINE L1 6526 6630 -6 6 1709 276 294 91 9 chr6 147379127 147379237 -2137800 + L2 LINE L2 2109 2227 -1192 6 1709 1224 39 0 0 chr6 147379261 147379415 -2137622 + (TC)n Simple_repeat Simple_repeat 2 155 0 6 1709 1175 194 111 39 chr6 147379630 147379963 -2137074 + ORR1D1 LTR MaLR 1 357 -17 6 1709 1690 163 67 29 chr6 147381051 147381392 -2135645 + ORR1C1 LTR MaLR 18 371 -7 6 1709 192 77 0 0 chr6 147382218 147382244 -2134793 + (CCCCCT)n Simple_repeat Simple_repeat 2 27 0 6 1709 998 221 55 115 chr6 147382346 147382694 -2134343 - ORR1D2 LTR MaLR -18 352 26 6 1709 254 316 40 0 chr6 147382709 147382785 -2134252 + ORR1E LTR MaLR 26 104 -255 6 1709 2117 176 32 96 chr6 147383019 147383573 -2133464 + RLTR31_Mur LTR ERVK 1 522 -31 6 1709 3209 66 0 2 chr6 147383573 147383970 -2133067 - MTA_Mm LTR MaLR 0 396 1 6 1709 2117 176 32 96 chr6 147383970 147384006 -2133031 + RLTR31_Mur LTR ERVK 523 553 0 6 1709 2687 304 111 38 chr6 147384183 147385545 -2131492 + MTE-int LTR MaLR 45 1505 -75 6 1709 348 310 116 71 chr6 147385573 147385910 -2131127 + ORR1E LTR MaLR 8 359 0 6 1709 180 0 0 0 chr6 147385968 147385988 -2131049 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 6 1709 277 315 68 19 chr6 147386015 147386222 -2130815 + L1M4 LINE L1 4639 4855 -1291 6 1709 619 251 11 0 chr6 147387473 147387652 -2129385 - L1_Mur3 LINE L1 -6659 1053 873 6 1709 812 218 52 183 chr6 147387788 147387949 -2129088 + L1_Mur2 LINE L1 908 1099 -6629 6 1709 390 42 0 0 chr6 147387949 147387997 -2129040 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1709 8173 191 26 47 chr6 147387997 147388826 -2128211 + L1_Mur2 LINE L1 1040 2031 -3849 6 1709 1413 78 15 20 chr6 147388826 147389022 -2128015 + B2_Mm2 SINE B2 1 195 0 6 1709 8173 172 19 32 chr6 147389022 147389062 -2127975 + L1_Mur2 LINE L1 2032 2068 -3812 6 1709 207 0 0 0 chr6 147389062 147389085 -2127952 + (CCA)n Simple_repeat Simple_repeat 1 23 0 6 1709 8173 172 19 32 chr6 147389085 147390172 -2126865 + L1_Mur2 LINE L1 2058 3139 -775 6 1709 1385 265 31 27 chr6 147390221 147390710 -2126327 - RLTR11A2 LTR ERVK -14 513 23 6 1709 4690 171 64 11 chr6 147390734 147391021 -2126016 + L1_Mur2 LINE L1 3146 3467 -2413 6 1709 531 0 0 0 chr6 147391021 147391080 -2125957 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1709 4690 171 64 11 chr6 147391080 147391757 -2125280 + L1_Mur2 LINE L1 3468 4160 -1720 6 1709 1186 253 17 73 chr6 147391766 147392124 -2124913 + Lx6 LINE L1 5907 6244 -1216 6 1709 976 228 35 0 chr6 147392128 147392325 -2124712 + Lx6 LINE L1 6531 6734 -726 6 1709 521 286 100 35 chr6 147392411 147392591 -2124446 - RLTR21 LTR ERVK -93 1479 1290 6 1709 230 0 33 0 chr6 147392591 147392621 -2124416 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1709 4622 137 56 26 chr6 147392621 147392750 -2124287 - RMER12 LTR ERVK -435 887 770 6 1709 486 0 0 0 chr6 147392750 147392804 -2124233 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1709 4622 137 56 26 chr6 147392804 147393535 -2123502 - RMER12 LTR ERVK -553 769 1 6 1709 1305 263 109 45 chr6 147393535 147394170 -2122867 + Lx6 LINE L1 6454 7434 -26 6 1709 193 57 57 0 chr6 147394218 147394253 -2122784 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1709 273 109 0 0 chr6 147394253 147394299 -2122738 + (TCCG)n Simple_repeat Simple_repeat 3 48 0 6 1709 189 0 0 0 chr6 147394613 147394634 -2122403 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1709 35358 68 2 8 chr6 147394783 147400410 -2116627 - L1Md_F2 LINE L1 0 6582 993 6 1709 3360 65 8 1 chr6 147400410 147400874 -2116163 - RLTR13B1 LTR ERVK 0 893 402 6 1709 1539 134 145 4 chr6 147400874 147401143 -2115894 - L1Md_F LINE L1 -5810 709 403 6 1709 1606 208 59 13 chr6 147401344 147401734 -2115303 + MTD LTR MaLR 12 419 0 6 1709 1462 239 56 20 chr6 147401739 147401863 -2115174 - ORR1D1 LTR MaLR -3 371 229 6 1709 264 77 0 0 chr6 147401863 147401902 -2115135 + (CAGG)n Simple_repeat Simple_repeat 4 42 0 6 1709 1462 239 56 20 chr6 147401902 147402135 -2114902 - ORR1D1 LTR MaLR -146 228 1 6 1709 665 255 104 25 chr6 147403651 147403852 -2113185 + B4A SINE B4 1 217 -75 6 1709 435 83 0 0 chr6 147403934 147403994 -2113043 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1709 273 364 13 32 chr6 147404448 147404604 -2112433 - LFSINE_Vert SINE SINE -234 225 73 6 1709 2457 147 141 14 chr6 147405489 147405980 -2111057 + RLTR31_Mur LTR ERVK 1 553 0 6 1709 730 238 93 13 chr6 147406282 147406508 -2110529 - MTEb LTR MaLR -124 255 12 6 1709 654 225 14 27 chr6 147406717 147406863 -2110174 + B1_Mur1 SINE Alu 5 148 -1 6 1709 636 190 0 0 chr6 147406978 147407094 -2109943 - ID_B1 SINE B4 -4 220 105 6 1709 520 243 52 0 chr6 147406979 147407115 -2109922 - B1F SINE Alu -5 144 2 6 1709 227 220 39 39 chr6 147407939 147408043 -2108994 + GA-rich Low_complexity Low_complexity 1 104 0 6 1709 996 225 139 24 chr6 147408074 147408361 -2108676 + RMER19C LTR ERVK 292 611 0 6 1709 3188 34 0 230 chr6 147408479 147409045 -2107992 + RLTR10C LTR ERVK 1 436 0 6 1709 2098 61 11 4 chr6 147409045 147409310 -2107727 + MMERVK10C-int LTR ERVK 1 267 -7314 6 1709 277 122 75 43 chr6 147409392 147409486 -2107551 + GA-rich Low_complexity Low_complexity 3 99 0 6 1709 366 67 0 0 chr6 147409486 147409531 -2107506 + RLTR10-int LTR ERVK 93 137 -6405 6 1709 1947 47 0 4 chr6 147409534 147409771 -2107266 + RLTR10-int LTR ERVK 652 887 -1100 6 1709 20031 31 0 0 chr6 147409750 147412037 -2105000 + MMERVK10C-int LTR ERVK 3524 5810 -1771 6 1709 8279 32 0 0 chr6 147412028 147412959 -2104078 + MMERVK10C-int LTR ERVK 6651 7581 0 6 1709 3741 37 7 0 chr6 147412959 147413392 -2103645 + RLTR10C LTR ERVK 1 436 0 6 1709 1103 156 16 93 chr6 147413869 147414116 -2102921 + MT2A LTR ERVL 3 230 -303 6 1709 545 174 23 8 chr6 147414129 147414262 -2102775 + CT-rich Low_complexity Low_complexity 3 137 0 6 1709 575 246 14 14 chr6 147414276 147414420 -2102617 + MT2A LTR ERVL 316 459 -74 6 1709 560 14 14 0 chr6 147414422 147414491 -2102546 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 7 1709 359 192 27 14 chr6 147415219 147415293 -2101744 + ID4_ SINE ID 1 75 -8 7 1709 423 310 38 105 chr6 147415680 147415889 -2101148 + RMER30 DNA MER1_type 7 201 -1 7 1709 417 324 20 26 chr6 147416003 147416155 -2100882 - RSINE1 SINE B4 -4 161 11 7 1709 459 0 0 0 chr6 147416171 147416222 -2100815 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1709 1025 279 11 11 chr6 147416259 147416534 -2100503 + MTD LTR MaLR 145 419 0 7 1709 31 58 0 0 chr6 147417309 147417361 -2099676 + AT_rich Low_complexity Low_complexity 1 52 0 7 1709 396 272 222 26 chr6 147417368 147417490 -2099547 - Lx9 LINE L1 -9 7635 7516 7 1709 504 0 0 0 chr6 147417490 147417546 -2099491 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 7 1709 396 272 222 26 chr6 147417546 147417774 -2099263 - Lx9 LINE L1 -129 7515 7217 7 1709 415 205 67 18 chr6 147418066 147418404 -2098633 + C-rich Low_complexity Low_complexity 1 354 0 7 1709 239 230 79 0 chr6 147418407 147418533 -2098504 + (CCCTG)n Simple_repeat Simple_repeat 2 137 0 7 1709 239 234 0 0 chr6 147419031 147419078 -2097959 - ID SINE ID -153 71 25 7 1709 533 242 60 14 chr6 147420813 147420972 -2096065 + MLT1A0 LTR MaLR 182 355 -35 7 1709 736 328 69 28 chr6 147421432 147421897 -2095140 + RMER5 LTR ERV1 51 534 0 7 1709 190 128 42 21 chr6 147421999 147422047 -2094990 + CT-rich Low_complexity Low_complexity 3 51 0 7 1709 321 261 184 69 chr6 147422571 147422789 -2094248 + L1MB8 LINE L1 5861 6103 -75 7 1709 297 0 0 0 chr6 147425766 147425799 -2091238 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1709 324 360 51 68 chr6 147426498 147426793 -2090244 - L1M4 LINE L1 -375 6302 6013 7 1709 520 245 14 14 chr6 147426863 147427004 -2090033 - ID_B1 SINE B4 0 224 84 7 1709 389 70 0 17 chr6 147427182 147427240 -2089797 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1709 456 305 182 38 chr6 147427330 147428378 -2088659 - L1M4 LINE L1 -1028 5616 4428 7 1709 401 284 200 61 chr6 147428821 147429254 -2087783 - L1M4 LINE L1 -5372 1170 677 7 1709 306 0 0 0 chr6 147429254 147429288 -2087749 + (TC)n Simple_repeat Simple_repeat 1 34 0 7 1709 405 0 0 0 chr6 147429288 147429332 -2087705 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1709 401 284 200 61 chr6 147429332 147429406 -2087631 - L1M4 LINE L1 -5866 676 592 7 1709 333 312 104 21 chr6 147429514 147429707 -2087330 - L1M4 LINE L1 -6125 417 209 7 1709 654 330 119 16 chr6 147431902 147432281 -2084756 + ERVL-B4-int LTR ERVL 870 1287 -4427 7 1709 367 271 136 0 chr6 147432287 147432405 -2084632 + ID_B1 SINE B4 86 219 -5 7 1709 403 270 298 14 chr6 147432421 147432712 -2084325 + ERVL-B4-int LTR ERVL 1347 1747 -4010 7 1709 2520 313 87 40 chr6 147432764 147433904 -2083133 + ERVL-B4-int LTR ERVL 4162 5354 -360 7 1709 279 272 22 0 chr6 147434174 147434266 -2082771 + MLT2B4 LTR ERVL 15 108 -448 7 1709 192 77 0 0 chr6 147434503 147434529 -2082508 + (GA)n Simple_repeat Simple_repeat 1 26 0 7 1709 278 279 68 130 chr6 147434535 147434696 -2082341 - MLT2B4 LTR ERVL -53 503 353 7 1709 206 128 0 25 chr6 147434787 147434827 -2082210 + CT-rich Low_complexity Low_complexity 2 40 0 7 1709 504 295 135 32 chr6 147435045 147435630 -2081407 - L1M4 LINE L1 -3260 2886 2242 7 1709 567 0 0 0 chr6 147437325 147437388 -2079649 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1709 239 260 41 0 chr6 147437653 147437726 -2079311 - Lx2 LINE L1 -1218 5779 5704 7 1709 308 225 60 48 chr6 147439836 147439920 -2077117 - RSINE1 SINE B4 -40 125 41 7 1709 275 253 114 0 chr6 147439998 147440077 -2076960 - L1M3 LINE L1 -389 5779 5692 7 1709 1656 267 47 32 chr6 147440318 147440552 -2076485 - Lx8 LINE L1 -512 6961 6717 7 1709 1112 218 128 14 chr6 147440552 147440897 -2076140 - ORR1C2 LTR MaLR 0 384 1 7 1709 1656 267 47 32 chr6 147440897 147441157 -2075880 - Lx8 LINE L1 -757 6716 6460 7 1709 2357 119 0 0 chr6 147441736 147442063 -2074974 - ORR1A2 LTR MaLR 0 327 1 7 1709 27 0 0 0 chr6 147442117 147442144 -2074893 + AT_rich Low_complexity Low_complexity 1 27 0 7 1709 279 296 88 7 chr6 147443631 147443767 -2073270 - L1MB2 LINE L1 -8 6163 6017 7 1709 224 214 29 0 chr6 147443995 147444065 -2072972 + CT-rich Low_complexity Low_complexity 1 72 0 7 1709 234 260 24 94 chr6 147444070 147444155 -2072882 - ID4_ SINE ID 0 83 5 7 1709 251 28 28 0 chr6 147444167 147444203 -2072834 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 7 1709 1126 84 0 0 chr6 147444675 147444817 -2072220 + B1_Mus1 SINE Alu 2 143 -5 7 1709 202 182 36 0 chr6 147444827 147444882 -2072155 + (TA)n Simple_repeat Simple_repeat 2 58 0 7 1709 1152 212 40 4 chr6 147444899 147445174 -2071863 - MTD LTR MaLR -134 285 1 7 1709 394 320 8 8 chr6 147445294 147445423 -2071614 + L1MC LINE L1 5521 5649 -2233 7 1709 207 0 0 0 chr6 147445615 147445638 -2071399 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1709 813 86 0 0 chr6 147445638 147445765 -2071272 + (GA)n Simple_repeat Simple_repeat 1 128 0 7 1709 198 0 0 0 chr6 147445797 147445819 -2071218 + (CAGAGA)n Simple_repeat Simple_repeat 3 24 0 7 1709 621 263 34 133 chr6 147445989 147446283 -2070754 - B4A SINE B4 0 292 28 7 1709 854 241 46 52 chr6 147446351 147446657 -2070380 - Lx9 LINE L1 -1 7643 7340 7 1709 432 0 0 0 chr6 147447193 147447241 -2069796 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 1709 345 174 0 0 chr6 147447740 147447809 -2069228 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 1709 303 260 0 25 chr6 147447896 147448054 -2068983 + (TATG)n Simple_repeat Simple_repeat 2 155 0 7 1709 309 329 7 7 chr6 147448060 147448198 -2068839 + (TG)n Simple_repeat Simple_repeat 1 138 0 7 1709 398 229 123 71 chr6 147448409 147448564 -2068473 + RSINE1 SINE B4 3 165 0 7 1709 563 244 55 0 chr6 147448595 147448722 -2068315 - B3 SINE B2 -81 135 2 7 1709 232 171 0 0 chr6 147448753 147448794 -2068243 - L1MCc LINE L1 -5157 1266 1226 7 1709 429 303 88 40 chr6 147449184 147449456 -2067581 + L1M5 LINE L1 3410 3694 -2452 7 1709 258 222 22 100 chr6 147452686 147452776 -2064261 - ID4_ SINE ID 0 83 1 7 1709 1374 141 136 95 chr6 147453435 147453781 -2063256 - ORR1B2 LTR MaLR -7 360 1 7 1709 549 356 55 8 chr6 147453963 147454218 -2062819 - B4A SINE B4 -25 267 1 7 1709 723 204 42 0 chr6 147454253 147454395 -2062642 + B1_Mur1 SINE Alu 2 149 0 7 1710 911 267 63 30 chr6 147456455 147456725 -2060312 - B4 SINE B4 -1 291 13 7 1710 585 281 278 14 chr6 147459774 147460266 -2056771 + Lx7 LINE L1 5299 5919 -1777 7 1710 366 250 320 0 chr6 147460781 147460937 -2056100 - B3 SINE B2 -10 206 1 7 1710 460 285 128 15 chr6 147461553 147461749 -2055288 + L1_Mur3 LINE L1 5462 5679 -201 7 1710 518 200 79 8 chr6 147462754 147462880 -2054157 - RMER16 LTR ERVK -398 135 1 7 1710 485 135 46 5 chr6 147462880 147462978 -2054059 - RMER16-int LTR ERVK 0 5406 5330 7 1710 4132 71 11 8 chr6 147463044 147463580 -2053457 - RMER16-int LTR ERVK -109 5297 4760 7 1710 1169 170 132 50 chr6 147463580 147463882 -2053155 + RMER16 LTR ERVK 38 449 -84 7 1710 1110 250 63 66 chr6 147463877 147464224 -2052813 - MTEa LTR MaLR -33 346 1 7 1710 1128 244 118 24 chr6 147464519 147464851 -2052186 + Lx6 LINE L1 7032 7394 -66 7 1710 274 294 95 34 chr6 147465665 147465813 -2051224 + RSINE1 SINE B4 1 157 -8 7 1710 683 237 87 26 chr6 147467922 147468117 -2048920 - B3 SINE B2 -8 208 2 7 1710 877 225 172 0 chr6 147468333 147468595 -2048442 - MTD LTR MaLR -14 405 99 7 1710 271 279 106 18 chr6 147468847 147468916 -2048121 + MT2A LTR ERVL 1 78 -523 7 1710 330 87 0 0 chr6 147468916 147468962 -2048075 + (TATG)n Simple_repeat Simple_repeat 4 49 0 7 1710 271 285 103 23 chr6 147468962 147469019 -2048018 + MT2A LTR ERVL 79 134 -450 7 1710 1161 196 251 14 chr6 147469039 147469390 -2047647 + MT2A LTR ERVL 100 533 0 7 1710 492 209 0 25 chr6 147470275 147470393 -2046644 + PB1D10 SINE Alu 1 115 -2 7 1710 248 230 40 26 chr6 147470402 147470478 -2046559 + ID4_ SINE ID 2 78 -5 7 1710 903 139 0 0 chr6 147470681 147470861 -2046176 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1710 392 119 17 72 chr6 147471018 147471199 -2045838 + (CA)n Simple_repeat Simple_repeat 1 171 0 7 1710 198 0 0 0 chr6 147471438 147471460 -2045577 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1710 3944 57 0 0 chr6 147472742 147473296 -2043741 - L1_Mus2 LINE L1 -508 6058 5505 7 1710 3854 77 2 23 chr6 147473296 147473827 -2043210 + L1_Mus2 LINE L1 6047 6566 0 7 1710 21 0 0 0 chr6 147474706 147474727 -2042310 + AT_rich Low_complexity Low_complexity 1 21 0 7 1710 2856 184 82 41 chr6 147475772 147476459 -2040578 - RMER19B LTR ERVK 0 902 1 7 1710 308 181 55 0 chr6 147476508 147476635 -2040402 + (TCTA)n Simple_repeat Simple_repeat 4 137 0 7 1710 229 116 116 0 chr6 147476646 147476715 -2040322 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 7 1710 192 40 0 0 chr6 147476736 147476761 -2040276 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 7 1710 434 302 137 0 chr6 147476764 147476903 -2040134 - RSINE1 SINE B4 0 165 8 7 1710 1076 144 121 29 chr6 147477248 147477455 -2039582 - URR1A DNA MER1_type 0 226 1 7 1710 453 81 0 0 chr6 147477668 147477730 -2039307 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 1710 995 182 21 0 chr6 147477801 147477993 -2039044 - URR1A DNA MER1_type -5 221 26 7 1710 531 98 0 0 chr6 147478076 147478168 -2038869 + (TA)n Simple_repeat Simple_repeat 2 93 0 7 1710 357 290 105 59 chr6 147478516 147478820 -2038217 - LTR87 LTR ERVL? -108 516 199 7 1710 263 319 0 33 chr6 147480329 147480449 -2036588 + CT-rich Low_complexity Low_complexity 1 116 0 7 1710 1157 194 168 11 chr6 147480571 147480923 -2036114 - MTD LTR MaLR 0 419 13 7 1710 330 279 0 0 chr6 147481335 147481482 -2035555 + (CA)n Simple_repeat Simple_repeat 2 148 0 7 1710 401 224 205 26 chr6 147483087 147483238 -2033799 + B3A SINE B2 10 187 -11 7 1710 640 233 112 15 chr6 147484460 147484656 -2032381 + B3 SINE B2 2 216 0 7 1710 377 288 202 16 chr6 147484692 147484939 -2032098 + MER2 DNA MER2_type 13 305 -40 7 1710 247 262 75 6 chr6 147485191 147485352 -2031685 + (TCTA)n Simple_repeat Simple_repeat 1 172 0 7 1710 385 286 99 31 chr6 147485527 147485718 -2031319 - B4A SINE B4 -86 206 3 7 1710 1565 212 58 46 chr6 147487829 147488240 -2028797 + MTD LTR MaLR 1 416 -3 7 1710 1032 260 180 59 chr6 147488243 147488497 -2028540 + MTD-int LTR MaLR 1 301 -957 7 1710 736 149 111 7 chr6 147488497 147488632 -2028405 + B1_Mur4 SINE Alu 2 150 0 7 1710 1032 260 180 59 chr6 147488632 147488933 -2028104 + MTD-int LTR MaLR 302 622 -636 7 1710 707 254 14 23 chr6 147490688 147490880 -2026157 - B3 SINE B2 -17 178 1 8 1710 2128 118 15 56 chr6 147492343 147492683 -2024354 + ORR1A3 LTR MaLR 1 326 0 8 1710 10374 128 55 91 chr6 147492683 147492986 -2024051 + ORR1A3-int LTR MaLR 1 309 -1654 8 1710 648 48 0 0 chr6 147492986 147493070 -2023967 + (GA)n Simple_repeat Simple_repeat 1 84 0 8 1710 10374 128 55 91 chr6 147493070 147494801 -2022236 + ORR1A3-int LTR MaLR 310 1962 -1 8 1710 1841 168 12 50 chr6 147494801 147495139 -2021898 + ORR1A3 LTR MaLR 1 325 -2 8 1710 222 319 95 15 chr6 147495156 147495293 -2021744 - B4A SINE B4 -144 148 1 8 1710 288 0 0 0 chr6 147496828 147496860 -2020177 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1710 1341 205 56 13 chr6 147497209 147497515 -2019522 - Lx9 LINE L1 -135 7509 7191 8 1710 638 241 69 6 chr6 147497516 147497675 -2019362 + Lx9 LINE L1 7006 7174 -470 8 1710 524 187 122 0 chr6 147503488 147503595 -2013442 - PB1D9 SINE Alu 0 120 1 1 1710 7815 56 16 0 chr6 147504946 147505927 -2011110 - L1_Mus3 LINE L1 -3 6635 5639 2 1710 2497 87 20 1 chr6 147505926 147506273 -2010764 + Lx6 LINE L1 5331 5680 -1780 3 1710 1328 70 26 31 chr6 147506280 147506471 -2010566 - B2_Mm2 SINE B2 -5 190 1 4 1710 708 297 82 13 chr6 147506648 147506880 -2010157 + B4A SINE B4 29 276 -16 5 1710 3473 120 60 2 chr6 147507140 147507803 -2009234 - RMER6A LTR ERVK -29 727 7 6 1710 357 226 21 11 chr6 147507914 147508008 -2009029 - B3A SINE B2 -14 184 90 7 1710 689 276 14 48 chr6 147509511 147509720 -2007317 + B3 SINE B2 5 206 -10 8 1710 211 300 43 0 chr6 147509952 147510022 -2007015 + (CATG)n Simple_repeat Simple_repeat 1 73 0 9 1710 725 322 51 15 chr6 147510032 147510306 -2006731 - B4A SINE B4 0 292 9 1 1710 666 225 21 7 chr6 147510314 147510457 -2006580 - B1_Mur1 SINE Alu 0 149 5 1 1710 349 266 0 44 chr6 147510788 147510902 -2006135 - B1_Mur1 SINE Alu 0 149 41 1 1710 198 179 0 0 chr6 147510943 147510999 -2006038 + A-rich Low_complexity Low_complexity 1 56 0 1 1710 32 0 0 0 chr6 147511891 147511923 -2005114 + AT_rich Low_complexity Low_complexity 1 32 0 1 1710 586 203 119 0 chr6 147512031 147512149 -2004888 - B3 SINE B2 -84 132 1 1 1710 515 317 63 41 chr6 147512857 147513173 -2003864 - Lx7 LINE L1 -423 7273 6951 1 1710 1111 219 260 116 chr6 147513494 147514047 -2002990 - RMER1B Other Other -369 697 65 1 1710 324 0 0 0 chr6 147515171 147515207 -2001830 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1710 23 33 0 0 chr6 147516249 147516279 -2000758 + AT_rich Low_complexity Low_complexity 1 30 0 1 1710 383 269 37 0 chr6 147516624 147516732 -2000305 + B1F SINE Alu 33 144 -5 2 1710 663 196 0 0 chr6 147516760 147516913 -2000124 + (CCAA)n Simple_repeat Simple_repeat 3 155 0 2 1710 193 57 57 0 chr6 147518271 147518306 -1998731 + (TTCCC)n Simple_repeat Simple_repeat 3 39 0 2 1710 477 0 0 0 chr6 147520253 147520306 -1996731 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1710 1094 29 0 0 chr6 147521481 147521620 -1995417 - B1_Mus2 SINE Alu 0 147 9 2 1710 705 159 6 50 chr6 147521620 147521640 -1995397 - ID_B1 SINE B4 0 224 73 2 1710 295 311 42 8 chr6 147522292 147522412 -1994625 + PB1 SINE Alu 2 125 -2 2 1710 789 185 13 33 chr6 147522482 147522633 -1994404 + B1_Mur1 SINE Alu 2 149 0 2 1710 33 25 0 0 chr6 147522648 147522688 -1994349 + AT_rich Low_complexity Low_complexity 1 40 0 2 1710 279 0 0 0 chr6 147524774 147524805 -1992232 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1710 462 18 0 0 chr6 147524805 147524859 -1992178 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1710 331 208 188 0 chr6 147524902 147524998 -1992039 - B4A SINE B4 -60 232 119 3 1710 375 301 29 10 chr6 147525009 147525113 -1991924 + B3A SINE B2 93 198 0 3 1710 8580 124 17 34 chr6 147525573 147527679 -1989358 - Lx4A LINE L1 -1 7057 4993 3 1710 180 0 0 0 chr6 147529733 147529753 -1987284 + (CAG)n Simple_repeat Simple_repeat 2 21 0 3 1710 993 242 80 100 chr6 147529905 147530398 -1986639 - RMER15 LTR ERVL 0 575 27 3 1710 251 233 88 55 chr6 147533003 147533094 -1983943 + L1M2 LINE L1 2513 2606 -4243 3 1710 516 132 0 0 chr6 147533236 147533319 -1983718 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 1710 180 0 0 0 chr6 147535922 147535942 -1981095 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 3 1710 38 68 0 0 chr6 147536134 147536207 -1980830 + AT_rich Low_complexity Low_complexity 1 73 0 3 1710 206 241 19 0 chr6 147537475 147537529 -1979508 + (TATG)n Simple_repeat Simple_repeat 2 56 0 4 1710 596 351 35 11 chr6 147537530 147537812 -1979225 - B4A SINE B4 0 292 4 4 1710 282 116 0 0 chr6 147537941 147537984 -1979053 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1710 526 292 7 0 chr6 147541490 147541634 -1975403 + ID_B1 SINE B4 80 224 0 4 1710 226 276 196 13 chr6 147542746 147542904 -1974133 + L1M4 LINE L1 49 235 -6307 4 1710 341 198 77 0 chr6 147543070 147543161 -1973876 - Lx8 LINE L1 -2 7471 7374 4 1710 327 245 273 47 chr6 147543231 147543531 -1973506 + L1M4 LINE L1 509 876 -5666 4 1710 251 296 68 17 chr6 147543742 147543859 -1973178 + L1M4 LINE L1 999 1121 -5421 4 1710 285 311 84 18 chr6 147544844 147545011 -1972026 - L1M3de LINE L1 -4959 1694 1517 4 1710 357 229 28 90 chr6 147545804 147545948 -1971089 - B1F1 SINE Alu -2 147 13 4 1710 433 239 17 0 chr6 147545855 147545959 -1971078 - ID_B1 SINE B4 -105 187 84 4 1710 325 324 75 19 chr6 147546640 147546854 -1970183 - B4 SINE B4 -8 284 59 4 1710 337 234 110 63 chr6 147547753 147547957 -1969080 + Lx7 LINE L1 5692 5920 -236 5 1710 956 206 65 5 chr6 147549496 147549696 -1967341 - B3 SINE B2 0 216 5 5 1710 864 279 125 88 chr6 147549911 147550559 -1966478 + Lx9 LINE L1 6958 7629 -15 5 1710 231 246 118 0 chr6 147550917 147551027 -1966010 - RMER30 DNA MER1_type -70 132 10 5 1710 425 50 0 16 chr6 147551507 147551568 -1965469 + (TGAA)n Simple_repeat Simple_repeat 4 63 0 5 1710 2128 92 3 3 chr6 147551832 147552149 -1964888 - ORR1A2 LTR MaLR -10 317 1 5 1710 364 222 215 0 chr6 147552469 147552604 -1964433 - Cheshire DNA MER1_type -512 1908 1745 5 1710 449 230 214 10 chr6 147552847 147553053 -1963984 - L1MA6 LINE L1 0 6300 6053 5 1710 441 0 0 0 chr6 147553084 147553133 -1963904 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1710 616 134 134 0 chr6 147557316 147557443 -1959594 + Lx4A LINE L1 6914 7057 -1 5 1710 1165 242 24 10 chr6 147559621 147559911 -1957126 - RLTR11A2 LTR ERVK -57 470 177 6 1710 2280 152 32 30 chr6 147559911 147560352 -1956685 + RLTR11B LTR ERVK 3 444 -9 6 1710 394 259 28 28 chr6 147560360 147560503 -1956534 - RMER15 LTR ERVL -97 478 336 6 1710 21 0 0 0 chr6 147561415 147561436 -1955601 + AT_rich Low_complexity Low_complexity 1 21 0 6 1710 938 242 131 45 chr6 147561446 147561827 -1955210 - BGLII_B LTR ERVK -27 414 1 6 1710 192 217 0 0 chr6 147562332 147562378 -1954659 + C-rich Low_complexity Low_complexity 2 47 0 6 1710 424 260 102 20 chr6 147562539 147562735 -1954302 - B3 SINE B2 -1 215 4 6 1710 230 292 41 14 chr6 147563483 147563556 -1953481 + ID4_ SINE ID 3 77 -6 6 1710 256 188 0 17 chr6 147563934 147564002 -1953035 - B1F SINE Alu -21 128 60 6 1710 250 296 42 0 chr6 147564836 147564907 -1952130 + MER58B DNA MER1_type 260 333 -8 6 1710 634 235 20 7 chr6 147567346 147567496 -1949541 - B3A SINE B2 -11 187 36 7 1710 502 223 8 42 chr6 147567674 147567803 -1949234 - PB1D7 SINE Alu -8 140 19 7 1710 23 0 0 0 chr6 147569129 147569152 -1947885 + AT_rich Low_complexity Low_complexity 1 23 0 7 1710 257 109 0 21 chr6 147569496 147569543 -1947494 + (CCCCCT)n Simple_repeat Simple_repeat 2 47 0 7 1710 296 301 60 0 chr6 147569548 147569631 -1947406 - PB1D10 SINE Alu -29 88 1 7 1710 219 355 23 76 chr6 147569631 147569681 -1947356 - B4 SINE B4 -209 83 41 7 1710 219 229 0 0 chr6 147569880 147569928 -1947109 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1710 1776 202 43 5 chr6 147570437 147570835 -1946202 + MTD LTR MaLR 6 418 -1 7 1710 537 58 0 0 chr6 147573293 147573362 -1943675 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 1710 1562 219 78 3 chr6 147573902 147574273 -1942764 + MTD LTR MaLR 18 416 -3 7 1710 573 315 65 41 chr6 147574293 147574631 -1942406 + L1MA4 LINE L1 5538 5926 -374 8 1710 3362 72 8 67 chr6 147575446 147575937 -1941100 - L1_Mus1 LINE L1 0 6567 6106 8 1710 1486 18 0 0 chr6 147575937 147576103 -1940934 + L1_Mus1 LINE L1 5645 5810 -757 8 1710 327 312 40 8 chr6 147576379 147576505 -1940532 - ID_B1 SINE B4 0 224 95 8 1710 1184 234 82 7 chr6 147576947 147577240 -1939797 - MTD LTR MaLR 0 419 105 8 1710 493 227 7 7 chr6 147577539 147577681 -1939356 + GA-rich Low_complexity Low_complexity 4 145 0 8 1710 7447 46 0 2 chr6 147578224 147579114 -1937923 - L1Md_F2 LINE L1 0 6582 5695 8 1710 382 223 42 91 chr6 147579501 147579644 -1937393 - B3A SINE B2 -62 136 1 8 1710 401 250 71 9 chr6 147581149 147581262 -1935775 - PB1D9 SINE Alu 0 120 1 8 1710 297 0 0 0 chr6 147583348 147583381 -1933656 + (TA)n Simple_repeat Simple_repeat 1 33 0 8 1710 195 125 0 0 chr6 147583818 147583858 -1933179 + (TTTTTA)n Simple_repeat Simple_repeat 2 41 0 9 1710 312 331 95 29 chr6 147584080 147584354 -1932683 - B4A SINE B4 0 292 1 9 1710 945 259 47 89 chr6 147585551 147585911 -1931126 - MTE2b LTR MaLR -15 364 20 9 1710 558 0 0 0 chr6 147586483 147586545 -1930492 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 1711 463 299 14 35 chr6 147588584 147588726 -1928311 + ID_B1 SINE B4 76 214 -10 9 1711 461 68 27 0 chr6 147588737 147588810 -1928227 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 9 1711 216 158 0 0 chr6 147588813 147588851 -1928186 + GA-rich Low_complexity Low_complexity 3 40 0 9 1711 180 0 0 0 chr6 147590209 147590229 -1926808 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 9 1711 341 131 0 16 chr6 147590333 147590395 -1926642 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 1711 396 254 49 7 chr6 147590398 147590541 -1926496 + (TATG)n Simple_repeat Simple_repeat 4 152 0 9 1711 225 281 0 0 chr6 147590604 147590661 -1926376 + A-rich Low_complexity Low_complexity 3 59 0 1 1711 563 281 17 12 chr6 147592000 147592173 -1924864 + L1MA7 LINE L1 6108 6281 -10 1 1711 192 77 0 0 chr6 147592237 147592263 -1924774 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1 1711 298 299 103 9 chr6 147592470 147592650 -1924387 - MIRb SINE MIR -83 193 1 1 1711 881 262 132 4 chr6 147593262 147593519 -1923518 + B4A SINE B4 3 292 0 1 1711 281 278 0 6 chr6 147593577 147593740 -1923297 + (CA)n Simple_repeat Simple_repeat 1 162 0 1 1711 244 301 0 24 chr6 147593754 147593839 -1923198 + (CA)n Simple_repeat Simple_repeat 1 83 0 1 1711 351 121 0 33 chr6 147593839 147593899 -1923138 + HAL1-3A_ME LINE L1 1976 2033 -825 1 1711 351 0 0 0 chr6 147593906 147593945 -1923092 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1711 820 255 41 82 chr6 147595648 147595939 -1921098 - B4 SINE B4 -12 280 2 1 1711 730 322 39 35 chr6 147596841 147596855 -1920182 - B4A SINE B4 -8 284 273 1 1711 549 0 0 0 chr6 147596855 147596916 -1920121 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1711 730 322 39 35 chr6 147596916 147597184 -1919853 - B4A SINE B4 -20 272 1 1 1711 283 316 79 0 chr6 147597188 147597302 -1919735 - MER20 DNA MER1_type -66 153 31 1 1711 267 247 13 25 chr6 147598330 147598409 -1918628 + RSINE1 SINE B4 2 79 -86 1 1711 729 0 0 0 chr6 147599807 147599888 -1917149 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1711 196 341 76 11 chr6 147602156 147602248 -1914789 + L3 LINE CR1 4282 4379 -110 1 1711 22 0 0 0 chr6 147603461 147603483 -1913554 + AT_rich Low_complexity Low_complexity 1 22 0 1 1711 7706 14 0 1 chr6 147603494 147604358 -1912679 + L1Md_T LINE L1 4724 5586 -297 1 1711 8172 56 0 0 chr6 147604358 147605354 -1911683 + L1Md_T LINE L1 5587 6582 0 1 1711 676 219 0 0 chr6 147605725 147605844 -1911193 + B1_Mus1 SINE Alu 3 121 -27 1 1711 432 314 16 0 chr6 147605889 147606013 -1911024 - ID_B1 SINE B4 -9 215 90 1 1711 915 297 117 0 chr6 147606230 147606530 -1910507 + MTEa LTR MaLR 45 379 0 1 1711 2149 243 147 19 chr6 147608762 147609592 -1907445 - RCHARR1 DNA MER1_type -36 938 3 1 1711 198 0 0 0 chr6 147610309 147610331 -1906706 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 1 1711 603 284 128 36 chr6 147611236 147611565 -1905472 + ORR1E LTR MaLR 1 359 0 1 1711 387 344 108 34 chr6 147611577 147611845 -1905192 - RMER15 LTR ERVL -15 560 273 1 1711 239 281 197 0 chr6 147612511 147612661 -1904376 - MIR SINE MIR -63 205 18 1 1711 507 56 0 0 chr6 147614257 147614328 -1902709 + (GA)n Simple_repeat Simple_repeat 2 72 0 1 1711 793 89 0 16 chr6 147614771 147614897 -1902140 + (TTTC)n Simple_repeat Simple_repeat 3 126 0 1 1711 315 0 0 0 chr6 147614906 147614941 -1902096 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1711 582 271 35 75 chr6 147614956 147615183 -1901854 - B4 SINE B4 -74 218 1 1 1711 1672 26 5 0 chr6 147616286 147616477 -1900560 - B2_Mm1a SINE B2 0 193 2 1 1711 374 289 58 39 chr6 147616508 147616663 -1900374 + MTEb LTR MaLR 3 160 -219 1 1711 273 57 0 0 chr6 147616773 147616808 -1900229 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1711 1154 82 0 0 chr6 147616820 147616967 -1900070 - B1_Mus2 SINE Alu 0 147 1 1 1711 7741 71 10 5 chr6 147616969 147618667 -1898370 + L1_Mus1 LINE L1 4862 6567 0 1 1711 522 0 0 0 chr6 147618746 147618804 -1898233 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1711 386 202 54 43 chr6 147618804 147618897 -1898140 - B3 SINE B2 -68 148 55 1 1711 216 0 0 0 chr6 147619369 147619393 -1897644 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1711 558 0 0 0 chr6 147619393 147619454 -1897583 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1711 1032 52 0 0 chr6 147619492 147619627 -1897410 - B1_Mus1 SINE Alu 0 148 14 1 1711 531 286 136 11 chr6 147619632 147619823 -1897214 - B4A SINE B4 -63 229 15 1 1711 1243 41 0 0 chr6 147621974 147622121 -1894916 + B1_Mm SINE Alu 1 147 0 1 1711 660 233 92 27 chr6 147622285 147622470 -1894567 - B3 SINE B2 -15 201 5 1 1711 616 206 15 11 chr6 147622699 147622969 -1894068 + GA-rich Low_complexity Low_complexity 1 270 0 1 1711 1198 258 51 40 chr6 147624710 147625085 -1891952 + MTE2a LTR MaLR 1 379 0 1 1711 1509 23 3 0 chr6 147625744 147626094 -1890943 + (TTC)n Simple_repeat Simple_repeat 1 351 0 1 1711 654 165 43 0 chr6 147628361 147628476 -1888561 + B1_Mus1 SINE Alu 1 120 -28 1 1711 830 314 73 15 chr6 147628856 147629186 -1887851 - ORR1E LTR MaLR -5 354 6 1 1711 985 107 0 0 chr6 147629805 147629955 -1887082 - RLTR9B LTR ERVK -1 436 287 1 1711 466 290 92 15 chr6 147630089 147630285 -1886752 - B3 SINE B2 -2 214 4 1 1711 804 215 158 5 chr6 147630310 147630525 -1886512 - Lx7 LINE L1 0 7696 7449 1 1711 403 335 54 38 chr6 147630526 147630937 -1886100 - MLT1C LTR MaLR 0 467 2 1 1711 230 356 7 27 chr6 147631103 147631253 -1885784 + (TGG)n Simple_repeat Simple_repeat 1 147 0 1 1711 323 250 0 7 chr6 147631265 147631414 -1885623 + (TGG)n Simple_repeat Simple_repeat 2 149 0 1 1711 373 274 29 0 chr6 147631423 147631525 -1885512 + (ATGGTG)n Simple_repeat Simple_repeat 6 110 0 1 1711 1939 75 12 107 chr6 147631850 147632195 -1884842 - L1_Mus2 LINE L1 0 6566 6255 1 1711 306 50 0 0 chr6 147632849 147632889 -1884148 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1711 438 65 0 0 chr6 147632889 147632950 -1884087 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1711 243 330 52 86 chr6 147632984 147633100 -1883937 - ID_B1 SINE B4 -8 216 105 1 1711 648 238 86 11 chr6 147633179 147633366 -1883671 + RMER30 DNA MER1_type 1 201 -1 1 1711 258 351 17 11 chr6 147634805 147634981 -1882056 + CT-rich Low_complexity Low_complexity 2 178 0 1 1711 416 306 27 22 chr6 147637016 147637200 -1879837 - MIR SINE MIR -65 197 13 1 1711 27 0 0 0 chr6 147639635 147639662 -1877375 + AT_rich Low_complexity Low_complexity 1 27 0 1 1711 1295 212 130 59 chr6 147639990 147640381 -1876656 + MTD LTR MaLR 1 419 0 1 1711 555 221 0 0 chr6 147640814 147640977 -1876060 + (TG)n Simple_repeat Simple_repeat 2 164 0 1 1711 312 349 0 58 chr6 147641086 147641223 -1875814 - MLT1I LTR MaLR 0 411 283 1 1711 203 186 23 0 chr6 147642640 147642683 -1874354 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1711 560 14 14 0 chr6 147644450 147644519 -1872518 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 1711 387 0 0 0 chr6 147644519 147644561 -1872476 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1711 278 106 0 21 chr6 147644920 147644968 -1872069 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 1711 233 310 99 25 chr6 147645271 147645433 -1871604 - L1MCa LINE L1 -5089 1419 1246 1 1711 303 211 0 0 chr6 147645433 147645528 -1871509 + CT-rich Low_complexity Low_complexity 1 95 0 1 1711 900 299 128 40 chr6 147645547 147646288 -1870749 - L1MCa LINE L1 -5228 1280 475 1 1711 231 255 20 0 chr6 147646375 147646426 -1870611 - B4 SINE B4 -18 274 223 1 1711 248 218 18 18 chr6 147646477 147646533 -1870504 - B4 SINE B4 -91 201 146 1 1711 615 62 0 0 chr6 147646569 147646649 -1870388 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1711 396 314 51 0 chr6 147646657 147646794 -1870243 - B3A SINE B2 -53 145 2 1 1711 339 281 0 50 chr6 147646794 147646893 -1870144 - B4 SINE B4 -197 95 2 1 1711 302 276 31 31 chr6 147647129 147647226 -1869811 - RSINE1 SINE B4 -25 140 44 1 1711 256 235 0 176 chr6 147648078 147648197 -1868840 + MTE2b LTR MaLR 1 98 -281 1 1711 626 258 122 11 chr6 147649232 147649420 -1867617 - B3 SINE B2 -5 211 3 1 1711 340 230 117 47 chr6 147650028 147650156 -1866881 - L1MC1 LINE L1 -280 6053 5917 1 1711 495 273 36 0 chr6 147650476 147650615 -1866422 - B1F SINE Alu 0 149 6 1 1711 270 267 32 32 chr6 147652383 147652476 -1864561 - LTR33C LTR ERVL -530 99 7 1 1711 463 280 132 24 chr6 147652568 147652773 -1864264 + B4 SINE B4 1 227 -65 1 1711 450 0 0 0 chr6 147652822 147652872 -1864165 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1711 327 49 0 0 chr6 147652872 147652912 -1864125 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1711 421 277 52 39 chr6 147654382 147654536 -1862501 - RSINE1 SINE B4 -4 161 6 1 1711 710 247 93 63 chr6 147655334 147655602 -1861435 + B4 SINE B4 11 286 -6 1 1711 576 0 0 0 chr6 147656057 147656121 -1860916 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1711 702 259 7 0 chr6 147656948 147657095 -1859942 - B1_Mur3 SINE Alu -1 148 1 1 1711 465 136 0 0 chr6 147657115 147657218 -1859819 + (T)n Simple_repeat Simple_repeat 1 103 0 1 1711 876 67 17 0 chr6 147657222 147657342 -1859695 + B1_Mus1 SINE Alu 18 139 -9 1 1711 183 42 0 0 chr6 147657342 147657366 -1859671 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1711 928 152 72 19 chr6 147657367 147657575 -1859462 - Lx9 LINE L1 -2 7642 7424 1 1711 320 350 20 34 chr6 147658347 147658495 -1858542 + B1F2 SINE Alu 2 147 -2 1 1711 692 257 133 97 chr6 147658709 147659071 -1857966 - MTEa LTR MaLR 0 379 5 1 1711 4412 22 2 0 chr6 147659559 147660051 -1856986 - MT2_Mm LTR ERVL 0 493 1 1 1711 321 0 0 0 chr6 147660051 147660089 -1856948 - MERVL-int LTR ERVL 0 5485 5448 1 1711 362 167 46 35 chr6 147660089 147660176 -1856861 - ORR1A3-int LTR MaLR -1323 640 553 1 1711 48457 15 6 0 chr6 147660176 147665502 -1851535 - MERVL-int LTR ERVL -125 5360 1 1 1711 4412 22 2 0 chr6 147665502 147665994 -1851043 - MT2_Mm LTR ERVL 0 493 1 1 1711 324 200 0 0 chr6 147667488 147667568 -1849469 + GA-rich Low_complexity Low_complexity 1 80 0 1 1711 260 275 135 68 chr6 147667933 147668081 -1848956 - MIRb SINE MIR -81 187 30 1 1711 694 33 0 182 chr6 147668406 147668626 -1848411 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1711 352 111 0 27 chr6 147668644 147668718 -1848319 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1711 1142 289 93 46 chr6 147669125 147669694 -1847343 - Lx9 LINE L1 -460 7184 6589 1 1711 263 295 61 31 chr6 147670475 147670573 -1846464 - PB1D7 SINE Alu -1 119 19 1 1711 261 245 0 0 chr6 147670641 147670694 -1846343 + ID4 SINE ID 31 83 0 1 1711 552 296 36 57 chr6 147671377 147671624 -1845413 - B4 SINE B4 -16 276 35 2 1711 1378 60 27 16 chr6 147672728 147672908 -1844129 + B2_Mm2 SINE B2 1 183 -12 2 1711 426 20 0 0 chr6 147672908 147672959 -1844078 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1711 369 193 132 0 chr6 147673064 147673147 -1843890 - PB1D7 SINE Alu -7 113 20 2 1711 933 78 30 6 chr6 147673503 147673670 -1843367 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 2 1711 370 189 63 34 chr6 147673751 147673926 -1843111 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1711 335 309 19 9 chr6 147675535 147675643 -1841394 + MIRb SINE MIR 9 117 -151 2 1711 188 283 0 0 chr6 147675937 147675983 -1841054 - MIR SINE MIR -57 151 106 2 1711 478 295 0 0 chr6 147676016 147676138 -1840899 + B4A SINE B4 169 290 -2 2 1711 455 0 18 0 chr6 147676158 147676213 -1840824 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1711 582 241 35 0 chr6 147677635 147677780 -1839257 - RSINE1 SINE B4 -13 152 3 2 1711 207 0 0 0 chr6 147678115 147678138 -1838899 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1711 717 262 100 61 chr6 147678205 147678485 -1838552 + B4A SINE B4 2 292 0 2 1711 239 297 89 78 chr6 147678522 147678551 -1838486 - L1M4c LINE L1 -4741 1643 1619 2 1711 212 0 36 0 chr6 147678551 147678579 -1838458 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1711 326 339 39 0 chr6 147678583 147678710 -1838327 - B1F2 SINE Alu -17 132 1 2 1711 239 297 89 78 chr6 147678710 147678854 -1838183 - L1M4c LINE L1 -4766 1618 1463 2 1711 318 260 51 0 chr6 147678926 147679025 -1838012 + Lx8 LINE L1 5643 5793 -507 2 1711 396 0 0 0 chr6 147679144 147679188 -1837849 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2 1711 946 203 104 0 chr6 147679314 147679526 -1837511 - B4A SINE B4 -56 236 3 2 1711 471 233 0 0 chr6 147680177 147680353 -1836684 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 1711 310 341 61 66 chr6 147680561 147680759 -1836278 + LTR33 LTR ERVL 21 217 -298 2 1711 261 83 0 0 chr6 147681904 147681940 -1835097 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2 1711 228 35 0 0 chr6 147682438 147682467 -1834570 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1711 447 19 0 0 chr6 147682467 147682518 -1834519 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1711 2276 81 212 6 chr6 147682567 147682916 -1834121 + BGLII LTR ERVK 1 421 0 2 1711 1016 179 177 73 chr6 147683292 147683636 -1833401 + MYSERV16_I-int LTR ERVK 470 849 -1993 2 1711 3199 192 117 87 chr6 147683702 147684735 -1832302 + RMER3D-int LTR ERVK 633 1696 -1146 2 1711 3578 190 116 9 chr6 147684725 147685655 -1831382 + MYSERV16_I-int LTR ERVK 1297 2326 0 2 1711 2848 87 19 21 chr6 147685655 147686077 -1830960 + BGLII LTR ERVK 1 421 0 2 1711 467 225 66 8 chr6 147686120 147686241 -1830796 - B4A SINE B4 -123 169 42 2 1711 634 244 64 0 chr6 147686320 147686492 -1830545 - ID_B1 SINE B4 -27 197 15 2 1711 2207 172 15 7 chr6 147687985 147688395 -1828642 + MTC LTR MaLR 1 413 -8 2 1711 269 306 42 54 chr6 147688441 147688607 -1828430 + L1MC5 LINE L1 7617 7780 -181 2 1711 742 306 32 35 chr6 147688704 147689016 -1828021 - MLT1E1A LTR MaLR -9 671 361 2 1711 301 285 15 61 chr6 147689027 147689158 -1827879 + MLT1F-int LTR MaLR 918 1042 -447 2 1711 213 39 0 0 chr6 147689507 147689533 -1827504 + (CATG)n Simple_repeat Simple_repeat 1 26 0 2 1711 730 263 95 0 chr6 147689623 147689813 -1827224 + ID_B1 SINE B4 3 210 -14 2 1711 9553 85 35 8 chr6 147690906 147692436 -1824601 - Lx3C LINE L1 -2 6974 5394 2 1711 651 281 47 114 chr6 147692474 147692816 -1824221 + ORR1E LTR MaLR 25 343 -16 2 1711 207 100 0 0 chr6 147693304 147693334 -1823703 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 2 1711 1931 218 21 5 chr6 147694096 147694525 -1822512 + MER57F LTR ERV1 1 436 0 2 1711 792 234 96 144 chr6 147695110 147695415 -1821622 - MTEa LTR MaLR -23 356 66 2 1711 2072 149 0 15 chr6 147695415 147695743 -1821294 - ORR1A2 LTR MaLR -4 323 1 2 1711 792 234 96 144 chr6 147695743 147695811 -1821226 - MTEa LTR MaLR -314 65 1 2 1711 400 261 127 24 chr6 147696555 147696720 -1820317 + B3A SINE B2 1 182 -16 2 1711 278 266 19 19 chr6 147697418 147697579 -1819458 + (CATATA)n Simple_repeat Simple_repeat 1 161 0 2 1711 413 320 20 0 chr6 147697599 147697746 -1819291 + (CATA)n Simple_repeat Simple_repeat 4 153 0 2 1711 334 278 33 109 chr6 147698461 147698671 -1818366 - ORR1E LTR MaLR -164 195 2 2 1711 215 293 20 29 chr6 147698730 147698832 -1818205 + (CATA)n Simple_repeat Simple_repeat 3 103 0 2 1711 1229 14 0 0 chr6 147698832 147698970 -1818067 + B1_Mus2 SINE Alu 2 139 -8 2 1711 360 0 0 0 chr6 147698970 147699010 -1818027 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2 1711 298 268 98 0 chr6 147699203 147699285 -1817752 - PB1D10 SINE Alu -27 90 1 2 1711 482 295 82 41 chr6 147699557 147699801 -1817236 - MLT1D LTR MaLR -4 501 248 2 1711 21 36 0 0 chr6 147700393 147700421 -1816616 + AT_rich Low_complexity Low_complexity 1 28 0 2 1711 234 0 0 0 chr6 147700530 147700556 -1816481 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1711 555 193 4 0 chr6 147700594 147700836 -1816201 + (TG)n Simple_repeat Simple_repeat 1 243 0 2 1711 369 43 0 0 chr6 147702277 147702324 -1814713 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 2 1711 441 0 0 0 chr6 147702407 147702456 -1814581 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1711 438 282 0 0 chr6 147703495 147703762 -1813275 + (TG)n Simple_repeat Simple_repeat 1 267 0 2 1711 26 0 0 0 chr6 147705571 147705597 -1811440 + AT_rich Low_complexity Low_complexity 1 26 0 2 1711 279 0 0 0 chr6 147706213 147706244 -1810793 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1711 355 188 67 56 chr6 147706274 147706364 -1810673 - ID_B1 SINE B4 -5 219 129 2 1711 426 85 0 0 chr6 147706764 147706823 -1810214 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1711 370 254 9 9 chr6 147707086 147707201 -1809836 + MLT1B LTR MaLR 66 180 -210 2 1711 315 0 0 0 chr6 147708649 147708684 -1808353 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1711 231 118 65 13 chr6 147709852 147709929 -1807108 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1711 251 257 14 14 chr6 147709930 147710001 -1807036 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 2 1711 447 315 134 6 chr6 147710069 147710248 -1806789 - B4A SINE B4 -89 203 2 2 1711 385 296 36 15 chr6 147710288 147710425 -1806612 + B1F1 SINE Alu 9 148 -1 2 1711 465 252 9 0 chr6 147710539 147710650 -1806387 - RMER15 LTR ERVL -20 555 444 2 1711 333 0 0 0 chr6 147711046 147711083 -1805954 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 1711 1488 180 108 28 chr6 147711107 147711467 -1805570 - RMER15 LTR ERVL -160 415 27 2 1711 414 0 0 0 chr6 147711808 147711854 -1805183 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1711 327 270 114 24 chr6 147712784 147712951 -1804086 - B3A SINE B2 -5 193 12 2 1711 361 156 13 13 chr6 147713301 147713379 -1803658 + GA-rich Low_complexity Low_complexity 3 80 0 2 1711 1097 110 0 5 chr6 147713380 147713591 -1803446 + (GAA)n Simple_repeat Simple_repeat 1 210 0 2 1711 2008 58 0 0 chr6 147715274 147715514 -1801523 - L1_Mus1 LINE L1 -309 6258 6019 2 1711 383 161 0 0 chr6 147715548 147715610 -1801427 + RMER12B LTR ERVK 1 62 -1342 2 1711 1063 151 0 10 chr6 147716247 147716441 -1800596 - RMER6C LTR ERVK 0 690 499 2 1711 418 256 130 27 chr6 147716558 147716803 -1800234 - RLTR21 LTR ERVK -197 1375 1288 2 1711 524 169 6 17 chr6 147716835 147717016 -1800021 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1711 3974 159 39 65 chr6 147717020 147717892 -1799145 - RMER12 LTR ERVK -473 849 1 2 213 735 138 411 30 chr6 147717892 147718256 -1798781 - RMER6C LTR ERVK -186 504 1 2 1712 254 191 244 11 chr6 147718632 147718722 -1798315 + B2_Mm2 SINE B2 3 113 -103 2 1712 231 140 0 85 chr6 147718726 147718773 -1798264 + MLT1J LTR MaLR 100 142 -370 2 1712 302 198 59 59 chr6 147718875 147718977 -1798060 + RLTR42 LTR ERVK 136 237 -2 2 1712 682 292 0 19 chr6 147718982 147719139 -1797898 - B3A SINE B2 -38 160 7 2 1712 642 212 86 0 chr6 147719156 147719307 -1797730 - B3 SINE B2 0 216 53 2 1712 495 48 0 0 chr6 147719685 147719747 -1797290 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1712 339 25 0 0 chr6 147720554 147720594 -1796443 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1712 246 261 0 0 chr6 147720747 147720816 -1796221 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1712 246 263 0 0 chr6 147720830 147721001 -1796036 + (TG)n Simple_repeat Simple_repeat 2 172 0 2 1712 506 211 6 0 chr6 147721036 147721211 -1795826 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 1712 321 214 95 0 chr6 147721246 147721330 -1795707 + B1F1 SINE Alu 1 92 -57 2 1712 1165 239 91 7 chr6 147722093 147722379 -1794658 + MTD LTR MaLR 44 353 -66 2 1712 1918 238 47 137 chr6 147722417 147723434 -1793603 - RMER17B LTR ERVK -32 926 1 2 1712 558 260 34 0 chr6 147723915 147724061 -1792976 + Lx8 LINE L1 7149 7299 -174 2 1712 1462 203 13 198 chr6 147724093 147724633 -1792404 - RMER15 LTR ERVL -93 482 43 2 1712 605 312 0 0 chr6 147725139 147725283 -1791754 + RSINE1 SINE B4 3 146 -19 2 1712 349 357 31 48 chr6 147725606 147725897 -1791140 - Charlie1b DNA MER1_type -203 320 35 2 1712 444 253 0 0 chr6 147726727 147726822 -1790215 - PB1D10 SINE Alu -8 109 15 2 1712 225 277 104 47 chr6 147726735 147726841 -1790196 - B4A SINE B4 -99 193 82 2 1712 762 32 0 0 chr6 147729895 147729988 -1787049 + (TTCC)n Simple_repeat Simple_repeat 3 95 0 2 1712 371 270 0 48 chr6 147730009 147730114 -1786923 - PB1D10 SINE Alu -17 100 1 2 1712 231 114 0 0 chr6 147730198 147730233 -1786804 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1712 2334 251 111 28 chr6 147730607 147731546 -1785491 + Lx6 LINE L1 6133 7417 -43 2 1712 294 50 0 0 chr6 147731547 147731587 -1785450 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2 1712 508 316 63 20 chr6 147732819 147733071 -1783966 - B4A SINE B4 -29 263 1 3 1712 984 165 4 4 chr6 147734988 147735242 -1781795 + (CTCA)n Simple_repeat Simple_repeat 1 254 0 3 1712 1471 91 244 8 chr6 147735586 147735852 -1781185 + ORR1A4 LTR MaLR 1 329 0 3 1712 261 305 37 19 chr6 147736544 147736651 -1780386 - LTR85a LTR Gypsy? -548 154 46 3 1712 203 103 26 0 chr6 147737282 147737321 -1779716 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1712 430 57 14 14 chr6 147737321 147737361 -1779676 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1712 1200 73 11 6 chr6 147737361 147737539 -1779498 + (GAGAA)n Simple_repeat Simple_repeat 1 179 0 3 1712 430 57 14 14 chr6 147737539 147737569 -1779468 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 1712 306 245 195 14 chr6 147737590 147737805 -1779232 - MLT2B5 LTR ERVL -20 535 282 3 1712 261 0 0 0 chr6 147738020 147738049 -1778988 + (CTGTG)n Simple_repeat Simple_repeat 4 32 0 3 1712 298 214 143 0 chr6 147738054 147738138 -1778899 - PB1D10 SINE Alu -15 102 7 3 1712 1146 83 0 0 chr6 147738579 147738723 -1778314 - B1_Mm SINE Alu -2 145 2 3 1712 333 92 15 44 chr6 147739471 147739539 -1777498 - B3 SINE B2 0 216 151 3 1712 741 120 100 50 chr6 147741196 147741336 -1775701 + B1_Mus1 SINE Alu 1 147 -1 3 1712 472 181 11 48 chr6 147741605 147741791 -1775246 + (TATG)n Simple_repeat Simple_repeat 2 180 0 3 1712 677 186 19 25 chr6 147741816 147742134 -1774903 + (TG)n Simple_repeat Simple_repeat 1 315 0 3 1712 3477 24 123 0 chr6 147745217 147745640 -1771397 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1712 219 344 187 8 chr6 147745836 147745899 -1771138 + B4 SINE B4 1 85 -207 3 1712 241 320 136 0 chr6 147745899 147746002 -1771035 + PB1D10 SINE Alu 1 117 0 3 1712 234 0 0 0 chr6 147746089 147746115 -1770922 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1712 405 0 0 0 chr6 147746117 147746162 -1770875 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1712 201 147 0 0 chr6 147746913 147746947 -1770090 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1712 576 240 84 42 chr6 147748231 147748444 -1768593 + ID_B1 SINE B4 2 223 -1 3 1712 309 299 0 0 chr6 147748953 147749030 -1768007 + RSINE1 SINE B4 72 148 -17 3 1712 21 0 0 0 chr6 147749318 147749339 -1767698 + AT_rich Low_complexity Low_complexity 1 21 0 3 1712 3102 118 19 8 chr6 147750699 147751168 -1765869 + Lx2 LINE L1 6513 6986 -11 3 1712 212 263 0 34 chr6 147751380 147751439 -1765598 + L4 LINE RTE 1785 1841 -188 3 1712 241 50 66 16 chr6 147751459 147751520 -1765517 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1712 555 16 0 0 chr6 147751774 147751838 -1765199 + (TCC)n Simple_repeat Simple_repeat 2 65 0 3 1712 521 292 2 0 chr6 147752280 147752416 -1764621 - B1F1 SINE Alu -10 140 3 3 1712 999 130 7 0 chr6 147753011 147753157 -1763880 - B1_Mus1 SINE Alu -1 147 1 3 1712 29 0 0 0 chr6 147753227 147753256 -1763781 + AT_rich Low_complexity Low_complexity 1 29 0 3 1712 944 285 42 4 chr6 147753963 147754227 -1762810 - B4 SINE B4 -18 274 1 3 1712 487 227 0 9 chr6 147754237 147754348 -1762689 - PB1D10 SINE Alu -5 112 3 3 1712 200 298 70 62 chr6 147754354 147754483 -1762554 - MIR SINE MIR -13 249 120 3 1712 556 241 77 39 chr6 147756483 147756690 -1760347 - MLT1B LTR MaLR -175 215 1 3 1712 557 313 20 7 chr6 147757141 147757289 -1759748 + RSINE1 SINE B4 3 152 -13 3 1712 25 51 0 0 chr6 147757293 147757332 -1759705 + AT_rich Low_complexity Low_complexity 1 39 0 3 1712 297 188 0 34 chr6 147758111 147758199 -1758838 + CT-rich Low_complexity Low_complexity 6 90 0 3 1712 899 96 50 0 chr6 147758863 147759146 -1757891 + (TAGA)n Simple_repeat Simple_repeat 1 297 0 3 1712 1305 266 38 30 chr6 147759613 147759981 -1757056 - MTEa LTR MaLR -8 371 1 3 1712 336 285 68 0 chr6 147760342 147760474 -1756563 - B1F SINE Alu -1 148 3 3 1712 278 143 0 125 chr6 147760833 147760897 -1756140 + B3 SINE B2 62 117 -99 3 1712 257 334 69 22 chr6 147761811 147761959 -1755078 + MIRc SINE MIR 20 174 -34 3 1712 677 110 9 0 chr6 147762142 147762251 -1754786 + (TC)n Simple_repeat Simple_repeat 1 110 0 3 1712 1592 188 142 32 chr6 147763296 147763669 -1753368 - RMER1C Other Other 0 1342 929 3 1712 547 71 24 0 chr6 147763831 147763916 -1753121 + (TC)n Simple_repeat Simple_repeat 1 87 0 3 1712 237 33 0 0 chr6 147763916 147763946 -1753091 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1712 402 21 0 0 chr6 147763946 147763992 -1753045 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1712 651 272 0 25 chr6 147763992 147764154 -1752883 - B3A SINE B2 -39 159 2 3 1712 225 222 33 22 chr6 147764880 147764972 -1752065 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 1712 717 266 28 17 chr6 147765015 147765191 -1751846 - B3 SINE B2 -36 180 3 3 1712 287 314 110 13 chr6 147767092 147767247 -1749790 - B4 SINE B4 -42 250 81 3 1712 790 118 29 22 chr6 147768479 147768617 -1748420 + L1_Mus2 LINE L1 6427 6565 -1 3 1712 288 143 0 0 chr6 147769424 147769480 -1747557 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1712 606 278 37 43 chr6 147769484 147769672 -1747365 - B3A SINE B2 -11 187 1 3 1712 638 251 92 5 chr6 147769943 147770127 -1746910 - ID_B1 SINE B4 0 224 25 3 1712 485 266 89 16 chr6 147771204 147771231 -1745806 - B3 SINE B2 -10 206 179 3 1712 351 0 0 0 chr6 147771231 147771270 -1745767 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1712 485 266 89 16 chr6 147771270 147771433 -1745604 - B3 SINE B2 -38 178 3 3 1712 372 272 188 26 chr6 147774772 147775006 -1742031 - L1MB8 LINE L1 -12 6166 5895 3 1712 7660 47 7 4 chr6 147775013 147775964 -1741073 - L1Md_F2 LINE L1 -1 6581 5660 3 1712 554 242 72 50 chr6 147776019 147776242 -1740795 - L1MB8 LINE L1 -561 5751 5536 3 1712 417 224 0 0 chr6 147776243 147776368 -1740669 + (CAG)n Simple_repeat Simple_repeat 1 125 0 3 1712 664 299 25 8 chr6 147777072 147777339 -1739698 - L1MA4 LINE L1 -372 5925 5664 3 1712 1572 220 53 17 chr6 147777857 147778218 -1738819 + MTEb LTR MaLR 1 374 -5 3 1712 468 0 0 0 chr6 147778218 147778270 -1738767 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1712 369 356 72 43 chr6 147778711 147778990 -1738047 - MLT1E1A LTR MaLR 0 680 394 3 1712 256 35 50 50 chr6 147779017 147779077 -1737960 + (CAAAAA)n Simple_repeat Simple_repeat 1 60 0 3 1712 1178 124 11 0 chr6 147779199 147779377 -1737660 - B2_Mm2 SINE B2 -2 193 14 3 1712 1704 201 82 34 chr6 147779373 147779790 -1737247 + RLTR20B3 LTR ERVK 35 471 -106 3 1712 725 33 11 0 chr6 147779794 147779886 -1737151 + (TC)n Simple_repeat Simple_repeat 2 94 0 3 1712 252 0 0 0 chr6 147779886 147779913 -1737124 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1712 2340 58 4 0 chr6 147779954 147780229 -1736808 + L1_Mus1 LINE L1 6290 6565 -2 3 1712 4705 14 0 0 chr6 147781545 147782038 -1734999 + MT2_Mm LTR ERVL 1 493 0 3 1712 309 341 90 12 chr6 147782135 147782301 -1734736 - Tigger15a DNA TcMar -528 187 9 3 1712 194 59 88 0 chr6 147783230 147783264 -1733773 + (TATAA)n Simple_repeat Simple_repeat 5 41 0 3 1712 281 290 120 0 chr6 147783583 147783683 -1733354 - PB1D10 SINE Alu -1 116 5 3 1712 273 245 41 31 chr6 147783958 147784055 -1732982 - L1MA5 LINE L1 -362 5938 5841 3 1712 361 239 82 0 chr6 147784042 147784151 -1732886 - L1_Mm LINE L1 -442 5441 5292 3 1712 892 225 77 16 chr6 147784165 147784359 -1732678 + B3 SINE B2 1 206 -10 3 1712 227 321 0 0 chr6 147784443 147784524 -1732513 - L1_Mm LINE L1 -640 5207 5127 3 1712 255 295 154 33 chr6 147784977 147785159 -1731878 - ORR1D2 LTR MaLR -147 223 20 3 1712 204 67 0 0 chr6 147786415 147786445 -1730592 + (TTAAA)n Simple_repeat Simple_repeat 4 33 0 3 1712 404 298 21 0 chr6 147786747 147786841 -1730196 + B4 SINE B4 43 138 -154 3 1712 284 0 28 0 chr6 147786869 147786905 -1730132 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1712 576 243 0 0 chr6 147786905 147787008 -1730029 - PB1D9 SINE Alu -11 109 7 3 1712 1152 216 38 5 chr6 147787818 147788027 -1729010 + B3 SINE B2 1 216 0 3 1712 501 311 68 26 chr6 147788074 147788414 -1728623 - L1M3 LINE L1 -1071 5069 4716 3 1712 825 175 0 0 chr6 147788433 147788559 -1728478 + B1_Mus2 SINE Alu 9 134 -13 3 1712 369 62 0 0 chr6 147788559 147788607 -1728430 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 1712 371 340 47 88 chr6 147788665 147788836 -1728201 + B4A SINE B4 6 169 -123 3 1712 473 305 145 11 chr6 147788975 147789257 -1727780 + L1M2 LINE L1 5495 5814 -486 3 1712 207 96 58 0 chr6 147789283 147789335 -1727702 + (CTATA)n Simple_repeat Simple_repeat 2 56 0 3 1712 443 250 27 55 chr6 147789383 147789544 -1727493 - Lx5 LINE L1 -38 7012 6875 3 1712 13452 156 27 99 chr6 147789533 147790584 -1726453 - L1_Mur2 LINE L1 -1782 4095 3076 3 1712 976 158 12 6 chr6 147790584 147790750 -1726287 + RMER6A LTR ERVK 590 756 0 3 1712 13452 156 27 99 chr6 147790750 147791809 -1725228 - L1_Mur2 LINE L1 -1782 3075 2047 3 1712 432 0 0 0 chr6 147791809 147791857 -1725180 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1712 13452 176 77 54 chr6 147791857 147793035 -1724002 - L1_Mur2 LINE L1 -3831 2046 859 3 1712 276 149 0 0 chr6 147793141 147793188 -1723849 + (TCC)n Simple_repeat Simple_repeat 3 49 0 3 1712 1701 5 0 0 chr6 147793562 147793755 -1723282 - L1_Mm LINE L1 -1825 4058 3866 3 1712 2343 196 94 63 chr6 147794003 147794460 -1722577 + Lx9 LINE L1 6977 7467 -177 3 1712 378 0 0 0 chr6 147794460 147794502 -1722535 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1712 2343 196 94 63 chr6 147794502 147794691 -1722346 + Lx9 LINE L1 7468 7643 -1 3 1712 245 237 0 0 chr6 147794897 147794956 -1722081 + U2 snRNA snRNA 1 59 -129 3 1712 8155 46 3 0 chr6 147795126 147796069 -1720968 + L1Md_F3 LINE L1 5625 6570 -14 4 1712 4657 71 53 16 chr6 147796572 147797191 -1719846 - Lx3_Mus LINE L1 0 7009 6368 4 1712 722 296 11 11 chr6 147797500 147797681 -1719356 + B3A SINE B2 2 182 -16 4 1712 737 257 151 32 chr6 147798431 147798716 -1718321 - MTEa LTR MaLR -56 323 5 4 1712 2308 120 3 50 chr6 147799583 147799925 -1717112 + ORR1A2 LTR MaLR 2 327 0 4 1712 625 208 6 6 chr6 147800258 147800437 -1716600 + CT-rich Low_complexity Low_complexity 1 179 0 4 1712 296 315 64 9 chr6 147800447 147800556 -1716481 - MLT1A1 LTR MaLR -2 406 292 4 1712 1011 295 77 15 chr6 147800889 147801344 -1715693 - L1MA7 LINE L1 -334 5957 5475 4 1712 1897 306 55 58 chr6 147802475 147803359 -1713678 + L1M4 LINE L1 76 957 -5585 4 1712 495 0 0 0 chr6 147803439 147803494 -1713543 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1712 299 275 169 67 chr6 147803542 147803806 -1713231 + L1M4 LINE L1 1157 1471 -5071 4 1712 468 0 0 0 chr6 147803806 147803858 -1713179 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1712 299 275 169 67 chr6 147803858 147803966 -1713071 + L1M4 LINE L1 1472 1575 -4967 4 1712 831 184 181 16 chr6 147803966 147804159 -1712878 - URR1A DNA MER1_type 0 226 2 4 1712 299 275 169 67 chr6 147804159 147804218 -1712819 + L1M4 LINE L1 1576 1633 -4909 4 1712 11924 155 120 16 chr6 147804480 147804965 -1712072 + L1_Mur2 LINE L1 884 1497 -4380 4 1712 1201 82 0 0 chr6 147804965 147805112 -1711925 + B1_Mus1 SINE Alu 1 147 -1 4 1712 290 45 0 22 chr6 147805121 147805166 -1711871 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4 1712 11924 150 18 25 chr6 147805166 147805729 -1711308 + L1_Mur2 LINE L1 1498 2047 -3830 4 1712 450 0 0 0 chr6 147805729 147805779 -1711258 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1712 11924 150 18 25 chr6 147805779 147807128 -1709909 + L1_Mur2 LINE L1 2048 3405 -2472 4 1712 250 328 17 11 chr6 147807128 147807193 -1709844 + ORR1B1-int LTR MaLR 583 759 -750 4 1712 464 204 42 85 chr6 147807176 147807193 -1709844 + MT2B LTR ERVL 145 156 -445 4 1712 836 99 0 0 chr6 147807193 147807304 -1709733 + B1_Mus1 SINE Alu 3 113 -35 4 1712 8905 135 20 7 chr6 147807304 147807482 -1709555 + Lx4B LINE L1 4446 4622 -1255 4 1712 221 0 35 0 chr6 147807482 147807511 -1709526 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1712 9091 135 19 16 chr6 147807511 147809912 -1707125 + Lx4B LINE L1 4623 7054 -4 4 1712 189 0 0 0 chr6 147810184 147810205 -1706832 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1712 1981 162 121 3 chr6 147810281 147810652 -1706385 + MTC LTR MaLR 1 415 -6 4 1712 231 275 29 0 chr6 147810657 147810726 -1706311 + L1M4 LINE L1 1970 2040 -4606 4 1712 2436 101 31 6 chr6 147810823 147811142 -1705895 - ORR1A2 LTR MaLR 0 327 1 4 1712 415 278 91 68 chr6 147811243 147811641 -1705396 + L1M4 LINE L1 2356 2762 -3884 4 1712 181 237 63 63 chr6 147813744 147813807 -1703230 + MIR SINE MIR 14 76 -186 4 1712 1346 189 229 28 chr6 147814123 147814500 -1702537 - Lx4A LINE L1 -32 7026 6593 4 1712 2874 149 25 10 chr6 147814496 147815012 -1702025 + Lx4B LINE L1 5776 6299 -759 4 1712 595 237 23 8 chr6 147815424 147815556 -1701481 + ID_B1 SINE B4 90 223 -1 4 1712 337 221 13 25 chr6 147815970 147816049 -1700988 - B4 SINE B4 0 292 215 4 1712 752 196 49 0 chr6 147816107 147816250 -1700787 - B1_Mur4 SINE Alu 0 150 1 4 1712 814 235 69 60 chr6 147816250 147816467 -1700570 - B4 SINE B4 -65 227 9 4 1712 232 207 43 128 chr6 147816613 147816707 -1700330 - MER5A1 DNA MER1_type -78 88 3 4 1712 25 0 0 0 chr6 147817498 147817523 -1699514 + AT_rich Low_complexity Low_complexity 1 25 0 4 1712 499 303 0 0 chr6 147817614 147817746 -1699291 + B1F2 SINE Alu 18 149 0 4 1712 6612 168 71 15 chr6 147817796 147818882 -1698155 + Lx5 LINE L1 5741 6897 -153 4 1712 450 0 0 0 chr6 147818882 147818932 -1698105 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1712 6612 168 71 15 chr6 147818932 147819085 -1697952 + Lx5 LINE L1 6898 7048 -2 4 1712 981 49 0 0 chr6 147819104 147819227 -1697810 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 4 1712 264 337 0 31 chr6 147819725 147819823 -1697214 - MIRm SINE MIR -173 103 9 4 1712 388 240 0 38 chr6 147820366 147820476 -1696561 - MTE2b LTR MaLR -278 101 1 4 1712 477 0 0 0 chr6 147821525 147821578 -1695459 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1712 262 335 71 125 chr6 147821653 147821837 -1695200 - B4A SINE B4 -111 181 8 4 1712 821 269 102 69 chr6 147822604 147822939 -1694098 - MTEa LTR MaLR 0 379 34 4 1712 720 266 26 56 chr6 147823442 147823637 -1693400 - B3A SINE B2 0 198 10 4 1712 235 294 103 0 chr6 147824493 147824561 -1692476 - ID4_ SINE ID -6 77 3 4 1712 387 250 173 39 chr6 147825557 147825661 -1691376 - PB1D7 SINE Alu -2 118 1 4 1712 2265 143 106 3 chr6 147826074 147826431 -1690606 + ORR1B1 LTR MaLR 1 394 0 4 1712 674 94 42 0 chr6 147826450 147826546 -1690491 + B2_Mm2 SINE B2 4 103 -92 4 1712 519 274 82 33 chr6 147827035 147827280 -1689757 - MT2A LTR ERVL -144 389 133 4 1712 382 227 131 20 chr6 147827295 147827394 -1689643 - MTEa LTR MaLR -269 110 1 4 1712 2397 161 110 5 chr6 147827948 147828384 -1688653 - RLTR33 LTR ERVK 0 678 197 4 1712 23 33 0 0 chr6 147828616 147828646 -1688391 + AT_rich Low_complexity Low_complexity 1 30 0 4 1712 274 200 0 0 chr6 147828665 147828715 -1688322 - RLTR18-int LTR ERVK -1103 4258 4209 4 1712 360 0 0 0 chr6 147829659 147829699 -1687338 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1712 7509 60 0 6 chr6 147830269 147831207 -1685830 - L1Md_F2 LINE L1 -1 6581 5650 4 1712 2134 57 3 0 chr6 147831205 147831470 -1685567 + L1Md_F2 LINE L1 5391 5662 -904 4 1712 183 80 0 0 chr6 147832569 147832594 -1684443 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 1712 202 256 0 0 chr6 147833008 147833051 -1683986 + A-rich Low_complexity Low_complexity 1 43 0 4 1712 563 199 90 26 chr6 147833076 147833231 -1683806 - B2_Mm2 SINE B2 -4 191 27 4 1712 336 48 0 0 chr6 147833231 147833273 -1683764 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 4 1712 1305 158 9 5 chr6 147833273 147833495 -1683542 - Lx3_Mus LINE L1 -21 6988 6766 4 1712 253 157 0 0 chr6 147833495 147833546 -1683491 + 4.5SRNA scRNA scRNA 40 90 -4 4 1712 258 103 0 0 chr6 147833546 147833585 -1683452 - B3 SINE B2 -177 39 1 4 1712 204 386 0 0 chr6 147834274 147834362 -1682675 - MIR SINE MIR -33 229 142 4 1712 614 249 27 2 chr6 147835097 147835263 -1681774 + ORR1D2 LTR MaLR 3 170 -200 4 1712 679 194 0 0 chr6 147835834 147835963 -1681074 + B1_Mur1 SINE Alu 3 131 -18 4 1712 235 315 36 36 chr6 147836573 147836741 -1680296 - L1MB3 LINE L1 -147 6036 5869 4 1712 244 174 27 4 chr6 147837572 147837640 -1679397 - L1M1 LINE L1 -474 5829 5759 4 1712 315 0 0 0 chr6 147837668 147837703 -1679334 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1712 2366 145 150 32 chr6 147837703 147838237 -1678800 + RMER6C LTR ERVK 1 597 -93 4 1712 227 333 60 15 chr6 147838243 147838377 -1678660 - L1M5 LINE L1 -917 5229 5090 4 1712 453 134 11 58 chr6 147838379 147838436 -1678601 + L1_Mm LINE L1 5310 5366 -517 4 1712 1809 80 44 4 chr6 147838436 147838688 -1678349 + L1_Mus4 LINE L1 6369 6630 -6 4 1712 453 134 11 58 chr6 147838688 147838717 -1678320 + L1_Mm LINE L1 5367 5392 -491 4 1712 2940 57 38 20 chr6 147838721 147839114 -1677923 + L1Md_F2 LINE L1 6183 6582 0 4 1712 518 73 0 0 chr6 147839133 147839201 -1677836 + L1_Mm LINE L1 5361 5428 -455 4 1712 509 307 112 24 chr6 147839425 147839836 -1677201 - L1M5 LINE L1 -2442 3704 3258 4 1712 1449 207 138 25 chr6 147839903 147840372 -1676665 + RMER4B LTR ERVK 1 457 -9 4 1712 979 216 48 19 chr6 147840389 147840597 -1676440 - B3 SINE B2 -1 215 2 4 1712 3173 187 14 34 chr6 147840908 147841534 -1675503 + RLTR18 LTR ERVK 1 614 -2 4 1712 210 143 0 0 chr6 147841653 147841688 -1675349 + (GAAA)n Simple_repeat Simple_repeat 3 37 0 4 1712 418 271 48 20 chr6 147841852 147841999 -1675038 - RMER15 LTR ERVL -17 558 408 4 1712 2332 113 56 45 chr6 147842153 147842615 -1674422 + IAPLTR2_Mm LTR ERVK 1 467 -8 4 1712 26806 8 9 15 chr6 147842616 147845614 -1671423 + IAPEz-int LTR ERVK 1 2980 -3501 4 26 38691 31 1 1 chr6 147845638 147852904 -1664133 - L1Md_T LINE L1 0 6585 1 4 1713 31869 15 4 0 chr6 147852904 147856402 -1660635 + IAPEz-int LTR ERVK 2971 6481 0 4 1713 2325 116 56 45 chr6 147856402 147856864 -1660173 + IAPLTR2_Mm LTR ERVK 1 467 -8 4 1713 563 183 29 9 chr6 147857386 147857491 -1659546 - B3A SINE B2 -88 110 4 4 1713 698 258 57 56 chr6 147857928 147858352 -1658685 + RLTR12B LTR ERVK 47 514 -14 4 1713 398 217 217 0 chr6 147858488 147858608 -1658429 + MTEb LTR MaLR 1 146 -233 4 1713 533 308 14 0 chr6 147858621 147858764 -1658273 + RSINE1 SINE B4 2 146 -19 4 1713 513 0 0 0 chr6 147858820 147858877 -1658160 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 1713 530 163 155 47 chr6 147858877 147859025 -1658012 + MTEb LTR MaLR 210 373 -6 4 1713 432 85 100 0 chr6 147859529 147859731 -1657306 + (TTATG)n Simple_repeat Simple_repeat 1 222 0 4 1713 252 224 0 0 chr6 147860674 147860741 -1656296 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1713 310 248 26 106 chr6 147861030 147861143 -1655894 - PB1D7 SINE Alu 0 120 17 4 1713 295 222 14 27 chr6 147861179 147861253 -1655784 - PB1D10 SINE Alu -3 114 42 4 1713 1253 125 120 0 chr6 147861865 147862065 -1654972 - URR1B DNA MER1_type 0 225 2 4 1713 24 32 0 0 chr6 147863176 147863207 -1653830 + AT_rich Low_complexity Low_complexity 1 31 0 4 1713 621 274 46 91 chr6 147863288 147863621 -1653416 - ORR1E LTR MaLR -15 364 36 4 1713 678 210 0 0 chr6 147863668 147864026 -1653011 + (TG)n Simple_repeat Simple_repeat 1 358 0 4 1713 550 147 55 0 chr6 147864007 147864342 -1652695 + (TCTG)n Simple_repeat Simple_repeat 1 353 0 4 1713 1251 75 0 0 chr6 147864343 147864678 -1652359 + (TG)n Simple_repeat Simple_repeat 1 335 0 4 1713 359 286 176 0 chr6 147864678 147864797 -1652240 - B3A SINE B2 -57 141 2 4 1713 826 183 118 0 chr6 147864908 147865077 -1651960 + Lx2 LINE L1 6808 6996 -1 4 1713 371 185 0 0 chr6 147865137 147865202 -1651835 + MTEa LTR MaLR 310 374 -5 4 1713 309 26 0 0 chr6 147865427 147865465 -1651572 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1713 359 311 140 43 chr6 147866291 147866805 -1650232 + L1MC3 LINE L1 7169 7732 -53 4 1713 946 126 97 6 chr6 147866821 147866997 -1650040 - B2_Mm2 SINE B2 -2 193 2 4 1713 263 216 86 6 chr6 147868781 147868944 -1648093 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 4 1713 251 168 74 12 chr6 147868958 147869121 -1647916 + (TAGA)n Simple_repeat Simple_repeat 3 175 0 4 1713 200 182 0 0 chr6 147869928 147869961 -1647076 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1713 412 319 0 0 chr6 147870528 147870666 -1646371 + (TG)n Simple_repeat Simple_repeat 1 138 0 5 1713 1757 174 69 31 chr6 147870684 147871034 -1646003 - ORR1B2 LTR MaLR 0 367 5 5 1713 201 280 0 0 chr6 147871040 147871158 -1645879 + (TG)n Simple_repeat Simple_repeat 1 118 0 5 1713 4038 142 91 67 chr6 147871190 147872126 -1644911 + RMER17B LTR ERVK 1 958 0 5 1713 320 0 25 0 chr6 147872126 147872166 -1644871 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1713 858 280 65 52 chr6 147872494 147872863 -1644174 - MTEa LTR MaLR -4 375 2 5 1713 1233 226 98 29 chr6 147873921 147874268 -1642769 - MTEa LTR MaLR -8 371 1 5 1713 2204 112 9 56 chr6 147875751 147876093 -1640944 - ORR1A3 LTR MaLR 0 326 1 5 1713 628 315 43 65 chr6 147876687 147876829 -1640208 - B4 SINE B4 -15 277 145 5 1713 306 0 0 0 chr6 147876829 147876863 -1640174 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1713 628 315 43 65 chr6 147876863 147876998 -1640039 - B4 SINE B4 -148 144 6 5 1713 396 247 11 0 chr6 147877158 147877251 -1639786 + B1F SINE Alu 1 94 -55 5 1713 4815 98 76 3 chr6 147877443 147878141 -1638896 - Lx3B LINE L1 -4 6969 6221 5 1713 639 271 151 16 chr6 147878361 147878612 -1638425 + B4A SINE B4 2 286 -6 5 1713 411 21 0 0 chr6 147879710 147879758 -1637279 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1713 534 262 30 7 chr6 147879821 147880002 -1637035 - L1MA4 LINE L1 -701 5883 5693 5 1713 2005 279 90 16 chr6 147880116 147881058 -1635979 + BLACKJACK DNA AcHobo 1658 2669 -275 5 1713 16422 63 4 7 chr6 147881073 147883184 -1633853 + L1Md_F2 LINE L1 3483 5586 -297 5 1713 7815 53 21 2 chr6 147883185 147884161 -1632876 + L1Md_F2 LINE L1 5588 6582 0 5 1713 850 203 40 0 chr6 147884161 147884338 -1632699 + B3 SINE B2 28 211 -5 5 1713 396 247 0 0 chr6 147884348 147884429 -1632608 + ID4_ SINE ID 3 83 0 5 1713 431 296 26 21 chr6 147884520 147884710 -1632327 + BLACKJACK DNA AcHobo 2750 2940 -4 5 1713 268 289 61 89 chr6 147885103 147885350 -1631687 + L1M4 LINE L1 3839 4078 -2068 5 1713 306 292 155 7 chr6 147885586 147885741 -1631296 - B4A SINE B4 -9 283 106 5 1713 357 272 65 98 chr6 147886080 147886232 -1630805 + L1M4 LINE L1 4539 4691 -1455 5 1713 3088 102 25 2 chr6 147886232 147886675 -1630362 + Lx2 LINE L1 6545 6997 0 5 1713 357 272 65 98 chr6 147886675 147886799 -1630238 + L1M4 LINE L1 4692 4806 -1340 5 1713 245 314 29 0 chr6 147887227 147887329 -1629708 + L1M4 LINE L1 5348 5452 -721 5 1713 223 235 0 0 chr6 147887760 147887811 -1629226 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1713 439 184 0 22 chr6 147887816 147887905 -1629132 - MTD LTR MaLR -332 87 1 5 1713 234 0 0 0 chr6 147888572 147888598 -1628439 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1713 1776 176 125 5 chr6 147889500 147889938 -1627099 + RMER1C Other Other 849 1339 -3 5 1713 244 298 47 39 chr6 147890297 147890426 -1626611 + MIRb SINE MIR 25 154 -114 5 1713 1496 204 75 45 chr6 147891212 147891732 -1625305 - RMER4B LTR ERVK -14 571 1 5 1713 702 256 24 0 chr6 147894316 147894480 -1622557 + B4A SINE B4 125 292 0 5 1713 289 395 0 0 chr6 147895288 147895440 -1621597 + (CA)n Simple_repeat Simple_repeat 1 152 0 5 1713 642 290 160 42 chr6 147895766 147896079 -1620958 + ORR1E LTR MaLR 8 357 -2 5 1713 501 265 119 25 chr6 147897448 147897649 -1619388 + MIR SINE MIR 43 262 0 5 1713 467 233 198 48 chr6 147898807 147898974 -1618063 + ID_B1 SINE B4 19 210 -14 5 1713 263 183 36 12 chr6 147898983 147899066 -1617971 + GA-rich Low_complexity Low_complexity 1 85 0 5 1713 514 308 64 71 chr6 147899211 147899508 -1617529 + MER121 Unknown Unknown 38 332 -80 5 1713 405 237 178 0 chr6 147900368 147900503 -1616534 + B4 SINE B4 102 260 -32 5 1713 468 283 0 0 chr6 147900513 147900686 -1616351 + (TG)n Simple_repeat Simple_repeat 1 173 0 5 1713 788 194 0 22 chr6 147900698 147900882 -1616155 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1713 201 39 0 0 chr6 147901747 147901773 -1615264 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 5 1713 694 60 0 20 chr6 147903094 147903196 -1613841 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 5 1713 189 0 0 0 chr6 147903880 147903901 -1613136 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1713 696 171 0 0 chr6 147904219 147904359 -1612678 + (TG)n Simple_repeat Simple_repeat 2 141 0 5 1713 566 201 23 17 chr6 147904391 147904568 -1612469 + (TATG)n Simple_repeat Simple_repeat 1 178 0 5 1713 431 238 31 0 chr6 147904529 147904689 -1612348 + (TATATG)n Simple_repeat Simple_repeat 6 170 0 5 1713 212 311 0 16 chr6 147905007 147905069 -1611968 + CT-rich Low_complexity Low_complexity 6 66 0 5 1713 228 273 0 0 chr6 147905009 147905053 -1611984 + polypyrimidine Low_complexity Low_complexity 2 45 0 5 1713 21 0 0 0 chr6 147905123 147905144 -1611893 + AT_rich Low_complexity Low_complexity 1 21 0 5 1713 367 310 0 9 chr6 147905620 147905734 -1611303 + PB1D7 SINE Alu 6 118 -2 5 1713 2720 256 53 65 chr6 147906161 147907134 -1609903 - RCHARR1 DNA MER1_type -3 971 10 5 1713 834 113 0 0 chr6 147908571 147908713 -1608324 + (TC)n Simple_repeat Simple_repeat 1 142 0 5 1713 361 281 76 25 chr6 147908813 147908970 -1608067 - Helitron2Na_Mam RC Helitron? -138 186 22 5 1713 1067 142 64 28 chr6 147909004 147909222 -1607815 + URR1A DNA MER1_type 1 226 0 5 1713 480 187 2 0 chr6 147909520 147909614 -1607423 + ID_B1 SINE B4 83 173 -51 5 1713 442 249 201 67 chr6 147910116 147910370 -1606667 + B4 SINE B4 5 292 0 5 1713 409 330 100 39 chr6 147910727 147911406 -1605631 + L1ME3 LINE L1 4681 5402 -777 5 1713 236 273 72 32 chr6 147911852 147911977 -1605060 + L1MA10 LINE L1 6194 6323 -11 5 1713 278 283 122 24 chr6 147912513 147912636 -1604401 + L1ME3 LINE L1 5856 5990 -172 5 1713 593 264 92 0 chr6 147912744 147912983 -1604054 - L1MC5 LINE L1 -403 7558 7298 5 1713 270 0 0 0 chr6 147912986 147913016 -1604021 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 5 1713 231 36 0 0 chr6 147913061 147913089 -1603948 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1713 1057 239 82 11 chr6 147913151 147913418 -1603619 - B4A SINE B4 -2 290 5 5 1713 301 227 87 12 chr6 147914349 147914456 -1602581 + ORR1D2 LTR MaLR 262 379 0 5 1713 280 294 0 81 chr6 147914456 147914503 -1602534 - B3A SINE B2 -97 101 63 5 1713 312 115 0 62 chr6 147914503 147914568 -1602469 - L1Md_A LINE L1 -1 6581 6521 5 1713 280 294 0 81 chr6 147914568 147914630 -1602407 - B3A SINE B2 -136 62 1 5 1713 279 0 0 0 chr6 147914632 147914663 -1602374 + (GTTTG)n Simple_repeat Simple_repeat 1 31 0 5 1713 689 264 26 0 chr6 147914663 147914818 -1602219 - ID_B1 SINE B4 -13 211 53 5 1713 1181 216 127 6 chr6 147914941 147915271 -1601766 + ORR1D2 LTR MaLR 1 370 0 5 1713 1214 159 87 0 chr6 147915552 147915759 -1601278 - URR1A DNA MER1_type -1 225 1 5 1713 390 259 0 12 chr6 147916224 147916310 -1600727 + RMER1C Other Other 456 540 -802 5 1713 3426 237 102 31 chr6 147916310 147917219 -1599818 + RMER1A Other Other 47 1020 -10 5 1713 5295 71 0 0 chr6 147917237 147917911 -1599126 + L1Md_T LINE L1 5909 6582 0 5 1713 552 239 0 0 chr6 147917933 147918046 -1598991 + PB1D7 SINE Alu 1 113 -7 5 1713 932 141 6 0 chr6 147918106 147918269 -1598768 + (TTTC)n Simple_repeat Simple_repeat 2 165 0 5 1713 904 211 119 0 chr6 147919299 147919484 -1597553 - B3 SINE B2 -7 209 3 5 1713 21 0 0 0 chr6 147920483 147920504 -1596533 + AT_rich Low_complexity Low_complexity 1 21 0 5 1713 443 33 0 16 chr6 147920548 147920610 -1596427 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1713 467 306 56 0 chr6 147920930 147921074 -1595963 - RSINE1 SINE B4 -10 155 4 5 1713 225 379 39 39 chr6 147921206 147921439 -1595598 + L2b LINE L2 3141 3373 -2 5 1713 274 239 0 29 chr6 147921917 147921986 -1595051 + GA-rich Low_complexity Low_complexity 2 68 0 5 1713 892 152 0 11 chr6 147921987 147922071 -1594966 + polypurine Low_complexity Low_complexity 1 84 0 5 1713 958 140 6 6 chr6 147922071 147922251 -1594786 + GA-rich Low_complexity Low_complexity 1 180 0 5 1713 892 152 0 11 chr6 147922251 147922345 -1594692 + polypurine Low_complexity Low_complexity 85 176 0 5 1713 1091 79 6 0 chr6 147922347 147922524 -1594513 + (GAA)n Simple_repeat Simple_repeat 3 180 0 5 1713 335 272 0 12 chr6 147922734 147922816 -1594221 - ID2 SINE ID -2 81 1 5 1713 558 0 0 0 chr6 147922855 147922917 -1594120 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 5 1713 437 286 16 16 chr6 147924871 147924999 -1592038 + ID_B1 SINE B4 12 139 -85 5 1713 420 185 0 0 chr6 147925922 147926003 -1591034 + B3 SINE B2 40 120 -96 5 1713 21 36 0 0 chr6 147926027 147926055 -1590982 + AT_rich Low_complexity Low_complexity 1 28 0 5 1713 22 35 0 0 chr6 147926336 147926365 -1590672 + AT_rich Low_complexity Low_complexity 1 29 0 5 1713 460 145 24 12 chr6 147927636 147927720 -1589317 + B3A SINE B2 6 90 -108 5 1713 694 221 15 7 chr6 147928357 147928494 -1588543 + B1_Mur2 SINE Alu 12 149 0 5 1713 337 232 28 36 chr6 147929610 147929726 -1587311 + B1F SINE Alu 1 148 -1 5 1713 267 93 0 0 chr6 147929847 147929890 -1587147 + (CAT)n Simple_repeat Simple_repeat 1 43 0 5 1713 211 114 0 43 chr6 147930809 147930855 -1586182 + G-rich Low_complexity Low_complexity 1 44 0 5 1713 293 236 14 14 chr6 147931557 147931630 -1585407 + MLT1L LTR MaLR 218 290 -320 5 1713 256 271 0 0 chr6 147932022 147932092 -1584945 + L1M4 LINE L1 4789 4858 -1288 5 1713 1940 311 78 14 chr6 147932074 147932906 -1584131 - L1M3de LINE L1 -4730 1923 1039 5 1713 623 351 116 16 chr6 147933070 147933511 -1583526 - L1M3de LINE L1 -5562 1091 579 5 1713 21 0 0 0 chr6 147933516 147933537 -1583500 + AT_rich Low_complexity Low_complexity 1 21 0 5 1713 291 93 0 0 chr6 147933556 147933599 -1583438 + (CTA)n Simple_repeat Simple_repeat 2 44 0 5 1713 397 273 0 83 chr6 147933599 147933743 -1583294 - ID_B1 SINE B4 -9 215 84 5 1713 794 331 55 38 chr6 147933744 147934143 -1582894 - L1M3de LINE L1 -6152 501 96 5 1713 242 308 13 0 chr6 147934988 147935066 -1581971 + L1M4 LINE L1 5017 5095 -1051 5 1713 798 258 67 5 chr6 147935243 147935448 -1581589 + B4A SINE B4 10 227 -65 5 1713 479 309 66 0 chr6 147935448 147935600 -1581437 + RSINE1 SINE B4 2 163 -2 6 1713 359 337 6 11 chr6 147935730 147935904 -1581133 + (CATA)n Simple_repeat Simple_repeat 3 175 0 6 1713 343 348 6 17 chr6 147935834 147936015 -1581022 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1713 231 243 14 41 chr6 147936077 147936150 -1580887 + L1M4 LINE L1 5320 5390 -790 5 1713 181 372 51 34 chr6 147936658 147936775 -1580262 + L2a LINE L2 3295 3413 -13 6 1713 738 88 46 17 chr6 147936863 147937037 -1580000 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 6 1713 350 295 93 79 chr6 147938521 147938801 -1578236 + RMER15 LTR ERVL 275 558 -17 6 1713 348 64 0 0 chr6 147939153 147939200 -1577837 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1713 233 257 14 28 chr6 147939396 147939468 -1577569 - BC1_Mm scRNA scRNA -66 86 16 6 1713 645 49 0 0 chr6 147939500 147939581 -1577456 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 1713 516 312 19 19 chr6 147939873 147940033 -1577004 - Tigger7 DNA MER2_type 0 2491 2332 6 1713 731 316 105 37 chr6 147940041 147940451 -1576586 - Tigger7 DNA MER2_type -2024 467 30 6 1713 23 33 0 0 chr6 147941228 147941258 -1575779 + AT_rich Low_complexity Low_complexity 1 30 0 6 1713 231 301 102 6 chr6 147941456 147941613 -1575424 + Tigger13a DNA MER2_type 178 349 -422 6 1713 1062 102 7 0 chr6 147941755 147941902 -1575135 - B1_Mus1 SINE Alu 0 148 1 6 1713 768 79 31 16 chr6 147942702 147942831 -1574206 + (TTTC)n Simple_repeat Simple_repeat 1 131 0 6 1713 259 147 13 207 chr6 147942831 147943063 -1573974 - RMER17C LTR ERVK -138 272 86 6 1713 216 267 17 0 chr6 147943068 147943128 -1573909 + GA-rich Low_complexity Low_complexity 1 61 0 6 1713 16636 61 1 4 chr6 147943527 147946316 -1570721 - L1Md_F2 LINE L1 -13 6569 3788 6 1713 2699 83 50 10 chr6 147946376 147946777 -1570260 - L1_Mus4 LINE L1 -1 6635 6219 6 1713 211 158 0 0 chr6 147947100 147947138 -1569899 + B4A SINE B4 1 38 -254 6 1713 291 271 94 78 chr6 147947986 147948166 -1568871 + MLT2B4 LTR ERVL 186 368 -188 6 1713 2915 180 39 20 chr6 147948785 147949345 -1567692 + Lx5 LINE L1 6477 7047 -3 6 1713 198 0 0 0 chr6 147950144 147950166 -1566871 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 6 1713 577 274 164 59 chr6 147951287 147951457 -1565580 + B4A SINE B4 1 200 -92 6 1713 2701 183 20 16 chr6 147951457 147951963 -1565074 - RLTR18B LTR ERVK -4 508 1 6 1713 577 274 164 59 chr6 147951963 147952048 -1564989 + B4A SINE B4 201 283 -9 6 1713 324 0 0 0 chr6 147952063 147952099 -1564938 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1713 258 319 95 0 chr6 147952343 147952512 -1564525 + Charlie6 DNA MER1_type 1945 2129 -1371 6 1713 320 179 34 45 chr6 147952524 147952612 -1564425 - PB1D10 SINE Alu -1 116 30 6 1713 1268 0 17 23 chr6 147952649 147952825 -1564212 + (TCTCC)n Simple_repeat Simple_repeat 2 176 0 6 1713 576 273 23 35 chr6 147953688 147953859 -1563178 + L1M3 LINE L1 5621 5789 -394 6 1713 563 244 0 22 chr6 147953864 147954048 -1562989 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1713 381 244 0 37 chr6 147954050 147954212 -1562825 + (CATA)n Simple_repeat Simple_repeat 3 158 0 6 1713 366 347 74 27 chr6 147954908 147955207 -1561830 - L1MC LINE L1 -824 5322 5010 6 1713 632 228 98 16 chr6 147955526 147955709 -1561328 + B3A SINE B2 1 198 0 6 1713 1538 254 58 60 chr6 147956304 147956924 -1560113 - RMER19C LTR ERVK 0 611 42 6 1713 3448 167 122 65 chr6 147956929 147957864 -1559173 - RMER19B LTR ERVK -12 890 1 6 1713 693 283 21 32 chr6 147959917 147960223 -1556814 + L1MA4A LINE L1 5715 6022 -278 6 1713 211 93 0 44 chr6 147960225 147960270 -1556767 + (GGGAGA)n Simple_repeat Simple_repeat 4 46 0 6 1713 317 136 0 15 chr6 147960304 147960371 -1556666 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1713 862 242 52 5 chr6 147960441 147960653 -1556384 + B4A SINE B4 6 227 -65 6 1713 552 315 29 16 chr6 147961180 147961496 -1555541 + L1_Rod LINE L1 1204 1523 -4324 6 1713 1147 129 39 22 chr6 147961494 147961716 -1555321 + Lx3C LINE L1 6339 6574 -484 6 1713 371 249 185 33 chr6 147961864 147962291 -1554746 - RMER1C Other Other -477 865 374 6 1713 333 259 181 34 chr6 147962495 147962931 -1554106 - RMER1C Other Other -469 873 374 6 1713 371 249 185 33 chr6 147963112 147963539 -1553498 - RMER1C Other Other -477 865 374 6 1713 273 263 183 30 chr6 147963624 147964051 -1552986 - RMER1C Other Other -477 865 374 6 1713 1080 284 25 21 chr6 147964073 147964594 -1552443 + Lx8 LINE L1 5601 6146 -1327 6 1713 203 284 0 0 chr6 147964854 147964921 -1552116 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1713 541 329 6 19 chr6 147965568 147965726 -1551311 + RSINE1 SINE B4 2 157 -8 6 1713 1273 293 108 34 chr6 147965752 147966553 -1550484 + RMER1B Other Other 34 892 -174 6 1713 610 209 6 56 chr6 147966682 147966844 -1550193 + RMER1B Other Other 912 1065 -1 6 1713 1081 238 174 3 chr6 147967075 147967391 -1549646 - ORR1D2 LTR MaLR 0 370 1 6 1713 681 173 8 16 chr6 147968364 147968493 -1548544 + B3A SINE B2 2 129 -69 6 1713 26225 28 37 0 chr6 147968512 147972331 -1544706 - L1Md_T LINE L1 0 6582 2622 6 1713 3908 90 16 11 chr6 147972305 147972869 -1544168 - L1Md_T LINE L1 -5742 982 416 6 1713 22 0 0 0 chr6 147972874 147972896 -1544141 + AT_rich Low_complexity Low_complexity 1 22 0 6 1713 993 104 6 30 chr6 147972909 147973062 -1543975 + B2_Mm2 SINE B2 9 161 -34 6 1713 234 0 0 0 chr6 147973062 147973088 -1543949 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 6 1713 993 104 6 30 chr6 147973088 147973102 -1543935 + B2_Mm2 SINE B2 162 172 -23 6 1713 316 198 234 16 chr6 147973124 147973252 -1543785 - L1MCa LINE L1 -899 5422 5267 6 1713 402 325 74 55 chr6 147973267 147973430 -1543607 - RMER30 DNA MER1_type -5 197 32 6 1713 231 250 0 51 chr6 147973474 147973533 -1543504 + Charlie12 DNA MER1_type 2800 2855 -18 6 1713 746 283 186 8 chr6 147973583 147973982 -1543055 - L1MCa LINE L1 -1130 5191 4722 6 1713 500 251 11 74 chr6 147974150 147974339 -1542698 + CT-rich Low_complexity Low_complexity 3 179 0 6 1713 2523 80 0 6 chr6 147974383 147974748 -1542289 + L1Md_F2 LINE L1 1313 1675 -4208 6 1713 18687 69 0 2 chr6 147974737 147977140 -1539897 + L1Md_F2 LINE L1 3187 5586 -297 6 1713 7791 63 1 9 chr6 147977141 147978129 -1538908 + L1Md_F2 LINE L1 5588 6567 -15 6 1713 1039 275 133 38 chr6 147978130 147978919 -1538118 - L1MCa LINE L1 -2928 3393 2530 6 1713 333 225 12 12 chr6 147978923 147979004 -1538033 - MTEa LTR MaLR -24 355 275 6 1713 300 213 0 16 chr6 147979002 147979064 -1537973 - MTEa LTR MaLR -70 309 249 6 1713 315 351 65 0 chr6 147979217 147979371 -1537666 + MER21B LTR ERV1 613 776 -87 6 1713 302 0 0 26 chr6 147979437 147979476 -1537561 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 6 214 1646 282 187 80 chr6 147979612 147981394 -1535643 - L1MCa LINE L1 -4490 2018 46 6 1714 840 149 93 39 chr6 147981850 147982032 -1535005 - ORR1D1 LTR MaLR 0 374 183 6 1714 976 214 212 84 chr6 147982053 147982552 -1534485 + RMER4B LTR ERVK 17 579 -6 6 1714 659 174 84 0 chr6 147982560 147982715 -1534322 - ORR1D1 LTR MaLR -188 186 19 6 1714 2651 108 46 33 chr6 147982716 147983174 -1533863 + RMER16 LTR ERVK 70 533 0 6 1714 5880 132 55 3 chr6 147983174 147984082 -1532955 + RMER16-int LTR ERVK 1 955 -4451 6 1714 14883 60 1 1 chr6 147984083 147985941 -1531096 + L1Md_F2 LINE L1 3728 5586 -297 6 1714 8514 37 0 0 chr6 147985941 147986937 -1530100 + L1Md_F2 LINE L1 5587 6582 0 6 1714 1403 101 14 0 chr6 147986937 147987145 -1529892 + RMER16-int LTR ERVK 940 1150 -4256 6 1714 8785 99 50 12 chr6 147987215 147988915 -1528122 + RMER16-int LTR ERVK 3642 5406 0 6 1714 3053 106 64 29 chr6 147988917 147989430 -1527607 + RMER16 LTR ERVK 3 533 0 6 1714 380 296 93 71 chr6 147989637 147989917 -1527120 + B4A SINE B4 5 290 -2 6 1714 4214 51 2 0 chr6 147990628 147991138 -1525899 + L1_Mus1 LINE L1 6057 6567 0 6 1714 4769 113 18 14 chr6 147992165 147992885 -1524152 + Lx3C LINE L1 6252 6974 -2 6 1714 2540 152 73 46 chr6 147993397 147993881 -1523156 + MT2A LTR ERVL 3 495 -38 6 1714 468 0 0 0 chr6 147993881 147993933 -1523104 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1714 2540 152 73 46 chr6 147993933 147993965 -1523072 + MT2A LTR ERVL 496 532 -1 6 1714 341 325 26 13 chr6 147994002 147994158 -1522879 + MLT1C LTR MaLR 269 426 -41 6 1714 233 308 12 49 chr6 147994509 147994591 -1522446 - ID2 SINE ID -3 80 2 6 1714 275 291 33 41 chr6 147994600 147994722 -1522315 - B1F SINE Alu -7 142 22 6 1714 22 0 0 0 chr6 147995276 147995298 -1521739 + AT_rich Low_complexity Low_complexity 1 22 0 6 1714 784 267 23 42 chr6 147997507 147997548 -1519489 + B3 SINE B2 2 42 -174 6 1714 1849 161 105 3 chr6 147997548 147997891 -1519146 - ORR1C1 LTR MaLR 0 378 1 6 1714 784 267 23 42 chr6 147997891 147998064 -1518973 + B3 SINE B2 43 212 -4 6 1714 895 209 31 66 chr6 147998157 147998383 -1518654 - ID_B1 SINE B4 -6 218 1 6 1714 312 283 58 8 chr6 147999444 147999565 -1517472 + ID_B1 SINE B4 77 203 -21 6 1714 435 262 138 11 chr6 148000599 148000773 -1516264 - B3A SINE B2 0 198 3 1 1714 319 322 47 7 chr6 148001240 148001390 -1515647 + MER103 DNA DNA 3 158 -8 2 1714 241 291 0 44 chr6 148002114 148002204 -1514833 + MER58B DNA MER1_type 107 192 -149 3 1714 246 229 0 0 chr6 148002568 148002616 -1514421 + ID4 SINE ID 17 64 -19 4 1714 191 36 0 35 chr6 148003946 148003975 -1513062 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1714 220 177 37 25 chr6 148004000 148004081 -1512956 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 6 1714 1285 214 71 78 chr6 148004107 148004521 -1512516 - Lx9 LINE L1 -26 7618 7215 7 1714 420 67 0 0 chr6 148004521 148004581 -1512456 + (TA)n Simple_repeat Simple_repeat 2 61 0 8 1714 351 0 0 0 chr6 148004581 148004619 -1512418 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1714 1285 214 71 78 chr6 148004619 148004654 -1512383 - Lx9 LINE L1 -430 7214 7174 7 1714 282 242 61 0 chr6 148004655 148004721 -1512316 + Lx9 LINE L1 6581 6650 -994 1 1714 685 173 250 0 chr6 148004739 148004895 -1512142 + Lx9 LINE L1 6757 6951 -693 1 1714 764 194 0 4 chr6 148005442 148005674 -1511363 + (TTG)n Simple_repeat Simple_repeat 1 230 0 1 1714 423 266 0 48 chr6 148005684 148005850 -1511187 - HAL1-2a_MD LINE L1 -519 2505 2348 1 1714 22 0 0 0 chr6 148006198 148006220 -1510817 + AT_rich Low_complexity Low_complexity 1 22 0 1 1714 391 244 227 13 chr6 148006397 148006551 -1510486 + ID_B1 SINE B4 38 224 0 1 1714 238 335 0 12 chr6 148007057 148007220 -1509817 + (GACTG)n Simple_repeat Simple_repeat 5 165 0 1 1714 2834 44 0 101 chr6 148008369 148008775 -1508262 - RLTR10B2 LTR ERVK 0 365 1 1 1714 4076 83 41 101 chr6 148008775 148009431 -1507606 - MMERVK10C-int LTR ERVK 0 7581 6965 1 1714 1616 98 113 0 chr6 148009431 148009687 -1507350 - IAP-d-int LTR ERVK -1287 5255 4971 1 1714 470 307 49 49 chr6 148009690 148010060 -1506977 - MMERVK10C-int LTR ERVK -6015 1566 1197 1 1714 2815 45 21 0 chr6 148010110 148010444 -1506593 - MMERVK10C-int LTR ERVK -995 992 652 1 1714 330 111 0 0 chr6 148010447 148010492 -1506545 - MMERVK10C-int LTR ERVK -6405 137 93 1 1714 507 79 45 45 chr6 148010492 148010624 -1506413 + CT-rich Low_complexity Low_complexity 3 134 0 1 1714 1169 71 17 34 chr6 148010714 148010889 -1506148 - RLTR10-int LTR ERVK -1775 212 41 1 1714 730 41 0 30 chr6 148010899 148011000 -1506037 - RLTR10B2 LTR ERVK 0 365 268 1 1714 482 222 29 22 chr6 148011380 148011393 -1505644 + B1F SINE Alu 9 21 -128 2 1714 906 128 0 0 chr6 148011393 148011542 -1505495 + (GGAA)n Simple_repeat Simple_repeat 2 150 0 2 1714 603 182 25 8 chr6 148011542 148011666 -1505371 + B1_Mur3 SINE Alu 22 147 -2 2 1714 184 245 19 19 chr6 148011912 148011966 -1505071 + MIRc SINE MIR 164 217 -51 2 1714 939 188 23 79 chr6 148012018 148012493 -1504544 - RMER17C LTR ERVK 0 410 9 2 1714 346 273 8 58 chr6 148013246 148013367 -1503670 - B3A SINE B2 -25 191 79 2 1714 189 0 0 0 chr6 148013849 148013870 -1503167 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1714 476 314 101 0 chr6 148013908 148014067 -1502970 - B4 SINE B4 -112 180 6 2 1714 352 337 6 0 chr6 148014122 148014291 -1502746 + (CACCC)n Simple_repeat Simple_repeat 3 172 0 2 1714 795 275 20 0 chr6 148015506 148015706 -1501331 - B3 SINE B2 -11 205 2 2 1714 720 283 128 28 chr6 148015867 148016118 -1500919 + B4A SINE B4 2 277 -15 2 1714 254 50 25 0 chr6 148016695 148016735 -1500302 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1714 234 0 0 0 chr6 148017660 148017686 -1499351 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1714 189 0 0 0 chr6 148018227 148018248 -1498789 + (TCCA)n Simple_repeat Simple_repeat 1 21 0 3 1714 228 323 46 0 chr6 148018376 148018506 -1498531 + RMER12 LTR ERVK 721 856 -466 3 1714 187 152 21 21 chr6 148018510 148018557 -1498480 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1714 225 196 0 0 chr6 148018563 148018609 -1498428 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1714 366 259 0 0 chr6 148018685 148018801 -1498236 + (TATG)n Simple_repeat Simple_repeat 4 119 0 3 1714 302 218 17 33 chr6 148018871 148019051 -1497986 + (TATG)n Simple_repeat Simple_repeat 2 178 0 3 1714 240 280 13 0 chr6 148019059 148019134 -1497903 + (TATATG)n Simple_repeat Simple_repeat 1 76 0 3 1714 542 199 11 17 chr6 148019136 148019310 -1497727 + (TATG)n Simple_repeat Simple_repeat 4 176 0 3 1714 391 238 39 29 chr6 148019530 148019634 -1497403 + PB1D7 SINE Alu 8 112 -8 4 1714 463 299 18 64 chr6 148021476 148021583 -1495454 - L1MA4 LINE L1 -375 5925 5824 4 1714 1119 94 69 37 chr6 148021583 148021771 -1495266 - B2_Mm2 SINE B2 0 195 2 4 1714 463 299 18 64 chr6 148021771 148021881 -1495156 - L1MA4 LINE L1 -477 5823 5718 4 1714 431 268 43 16 chr6 148021887 148022073 -1494964 - MER33 DNA MER1_type -91 233 43 4 1714 672 323 38 19 chr6 148022608 148022873 -1494164 - B4A SINE B4 -18 274 5 4 1714 258 345 70 25 chr6 148023043 148023242 -1493795 - MER58A DNA MER1_type -16 208 1 4 1714 35841 77 7 5 chr6 148023441 148029589 -1487448 - L1Md_F2 LINE L1 -2 6580 422 4 1714 189 0 0 0 chr6 148029688 148029709 -1487328 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1714 782 259 45 41 chr6 148029733 148029954 -1487083 - B4A SINE B4 -68 224 3 4 1714 228 228 35 0 chr6 148030855 148030912 -1486125 + ID4_ SINE ID 5 63 -20 4 1714 396 0 0 0 chr6 148030940 148030984 -1486053 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 1714 273 222 0 0 chr6 148031814 148031868 -1485169 - L1MC1 LINE L1 -19 6314 6261 5 1714 807 273 67 39 chr6 148031877 148032159 -1484878 + B4A SINE B4 3 292 0 5 1714 351 256 0 0 chr6 148032173 148032306 -1484731 + (CA)n Simple_repeat Simple_repeat 2 134 0 5 1714 561 240 0 0 chr6 148032320 148032495 -1484542 + (CA)n Simple_repeat Simple_repeat 1 175 0 5 1714 265 234 103 31 chr6 148032516 148032613 -1484424 - L1MC1 LINE L1 -218 6115 6012 5 1714 649 289 104 10 chr6 148032657 148032965 -1484072 - L1MC1 LINE L1 -443 5890 5554 5 1714 376 291 52 75 chr6 148032982 148033194 -1483843 - LTR52 LTR ERVL -200 221 15 5 1714 800 221 0 23 chr6 148033333 148033509 -1483528 - B3 SINE B2 -2 214 43 5 1714 1545 166 116 27 chr6 148033886 148034215 -1482822 - ORR1B2 LTR MaLR -2 365 8 5 1714 5190 194 48 11 chr6 148034341 148035293 -1481744 + Lx6 LINE L1 6296 7283 -177 5 1714 193 311 89 0 chr6 148035854 148035944 -1481093 - MIRb SINE MIR -74 194 97 5 1714 923 293 47 7 chr6 148036039 148036314 -1480723 + B4A SINE B4 1 286 -6 5 1714 362 208 0 25 chr6 148036407 148036486 -1480551 + ID_B1 SINE B4 148 224 0 6 1714 240 342 0 43 chr6 148036811 148036927 -1480110 + Tigger7 DNA MER2_type 24 134 -2357 6 1714 2771 203 79 53 chr6 148038204 148038980 -1478057 - RLTR40 LTR ERVK -14 803 8 6 1714 349 299 29 29 chr6 148039001 148039139 -1477898 - B1F SINE Alu -7 142 5 6 1714 263 0 81 0 chr6 148039189 148039226 -1477811 + (TAAAA)n Simple_repeat Simple_repeat 5 44 0 6 1714 270 0 0 0 chr6 148039394 148039424 -1477613 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1714 734 232 65 30 chr6 148039729 148039929 -1477108 + B3 SINE B2 5 211 -5 6 1714 942 235 9 36 chr6 148040391 148040612 -1476425 - B3 SINE B2 0 216 2 6 1714 2457 220 48 34 chr6 148040730 148041341 -1475696 - RLTR17 LTR ERVK -73 619 1 6 1714 212 188 141 0 chr6 148041341 148041405 -1475632 + B1F SINE Alu 68 140 -9 6 1714 623 279 7 0 chr6 148042362 148042502 -1474535 - ID_B1 SINE B4 -2 222 82 7 1714 293 293 13 60 chr6 148042369 148042518 -1474519 + YREP_Mm Unknown Unknown 186 327 -1485 7 1714 477 50 0 0 chr6 148043160 148043220 -1473817 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1714 973 259 60 4 chr6 148043257 148043524 -1473513 - B4A SINE B4 -6 286 5 7 1714 426 229 51 20 chr6 148043533 148043631 -1473406 - PB1D10 SINE Alu -4 113 13 7 1714 326 297 16 33 chr6 148044350 148044472 -1472565 + RSINE1 SINE B4 42 161 -4 7 1714 270 0 0 0 chr6 148045061 148045091 -1471946 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1714 306 0 0 0 chr6 148045134 148045168 -1471869 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1714 360 0 0 0 chr6 148045211 148045251 -1471786 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1714 234 0 0 0 chr6 148045294 148045320 -1471717 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1714 227 167 11 45 chr6 148045426 148045514 -1471523 + (TATG)n Simple_repeat Simple_repeat 2 86 0 7 1714 1374 70 27 11 chr6 148048261 148048448 -1468589 + B2_Mm2 SINE B2 2 191 -4 7 1714 1103 89 0 0 chr6 148048567 148048713 -1468324 + B1_Mm SINE Alu 1 146 -1 7 1714 243 0 0 0 chr6 148048713 148048740 -1468297 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1714 1207 68 0 0 chr6 148049212 148049359 -1467678 - B1_Mus2 SINE Alu 0 147 1 8 1714 188 354 73 51 chr6 148049638 148049775 -1467262 - L2b LINE L2 -234 3141 3002 8 1714 952 159 0 0 chr6 148050273 148050418 -1466619 - B1_Mur3 SINE Alu 0 149 5 8 1714 325 250 1 4 chr6 148051854 148051903 -1465134 + L1MEg2 LINE L1 790 837 -5615 8 1714 382 259 69 35 chr6 148051903 148052047 -1464990 + B1F SINE Alu 1 149 0 8 1714 325 264 22 182 chr6 148052047 148052191 -1464846 + L1MEg2 LINE L1 837 953 -5499 8 1714 582 259 4 0 chr6 148052197 148052453 -1464584 + (CA)n Simple_repeat Simple_repeat 1 256 0 8 1714 474 256 188 0 chr6 148052562 148052695 -1464342 - RSINE1 SINE B4 -2 163 6 8 1714 1151 51 0 0 chr6 148053181 148053319 -1463718 - B1_Mus2 SINE Alu -9 138 1 8 1714 306 286 141 33 chr6 148053355 148053539 -1463498 + L1MEg2 LINE L1 2606 2809 -4741 8 1714 41 36 0 0 chr6 148054137 148054192 -1462845 + AT_rich Low_complexity Low_complexity 1 55 0 8 1714 306 0 0 0 chr6 148054658 148054692 -1462345 + (TAG)n Simple_repeat Simple_repeat 2 35 0 9 1714 558 275 143 16 chr6 148054807 148055051 -1461986 + B4A SINE B4 2 276 -16 9 1714 396 0 0 0 chr6 148055069 148055113 -1461924 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1714 339 65 0 0 chr6 148055604 148055650 -1461387 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 1714 206 133 0 0 chr6 148055842 148055872 -1461165 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1714 388 225 79 0 chr6 148056033 148056122 -1460915 - ID_B1 SINE B4 -2 222 127 9 1714 767 267 48 33 chr6 148056677 148056923 -1460114 + B4 SINE B4 29 287 -5 9 1714 345 289 0 4 chr6 148056986 148057110 -1459927 + B1F2 SINE Alu 24 144 -5 9 1714 225 0 0 0 chr6 148057122 148057147 -1459890 + (ATTAG)n Simple_repeat Simple_repeat 4 28 0 9 1714 186 43 0 0 chr6 148057147 148057170 -1459867 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 9 1714 297 0 0 0 chr6 148058338 148058371 -1458666 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1714 220 238 78 16 chr6 148059156 148059220 -1457817 + MIRb SINE MIR 124 191 -77 1 1714 189 0 0 0 chr6 148059257 148059278 -1457759 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 1714 200 214 52 35 chr6 148060133 148060191 -1456846 + GA-rich Low_complexity Low_complexity 3 61 0 1 1714 1200 225 130 33 chr6 148060557 148060938 -1456099 - MTD LTR MaLR -14 405 1 1 1714 270 259 67 56 chr6 148061018 148061108 -1455929 - RSINE1 SINE B4 -31 134 44 1 1714 254 305 0 0 chr6 148061649 148061708 -1455329 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1714 323 304 135 35 chr6 148061725 148061984 -1455053 - B4A SINE B4 -4 288 4 1 1714 217 229 36 0 chr6 148062243 148062326 -1454711 + CT-rich Low_complexity Low_complexity 4 89 0 1 1714 430 210 100 0 chr6 148062337 148062437 -1454600 - B1_Mur1 SINE Alu -7 142 33 1 1714 261 0 0 0 chr6 148062694 148062723 -1454314 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1714 943 263 5 5 chr6 148064248 148064466 -1452571 + ID_B1 SINE B4 1 218 -6 1 1714 1079 268 77 6 chr6 148064787 148065125 -1451912 + MTE2a LTR MaLR 18 379 0 1 1714 675 219 115 26 chr6 148065575 148065739 -1451298 + B3 SINE B2 2 169 -47 1 1714 270 0 0 0 chr6 148065739 148065769 -1451268 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1 1714 675 219 115 26 chr6 148065769 148065796 -1451241 + B3 SINE B2 170 209 -7 1 1714 848 300 32 7 chr6 148065952 148066231 -1450806 - B4A SINE B4 -2 290 5 1 1714 431 286 200 25 chr6 148066418 148067071 -1449966 - L1MA8 LINE L1 -205 6086 5312 1 1714 2295 201 60 17 chr6 148067815 148068346 -1448691 - RLTR20B3 LTR ERVK 0 577 24 1 1714 455 261 111 6 chr6 148069446 148069627 -1447410 - MER89 LTR ERV1 -359 200 1 1 1714 1119 128 30 20 chr6 148069692 148069892 -1447145 + RLTR13B4 LTR ERVK 1 202 -601 1 1714 941 71 0 0 chr6 148069891 148070018 -1447019 + B1_Mm SINE Alu 21 147 0 1 1714 716 208 52 69 chr6 148070026 148070304 -1446733 + RLTR13B4 LTR ERVK 199 549 -429 1 1714 21775 53 0 0 chr6 148070305 148072971 -1444066 - L1Md_F2 LINE L1 -51 5832 3166 1 1714 5477 44 0 1 chr6 148072971 148073625 -1443412 + L1Md_F2 LINE L1 5919 6571 -11 1 1714 1607 188 24 48 chr6 148073653 148074066 -1442971 + RLTR13A LTR ERVK 453 855 0 1 1714 4371 69 31 27 chr6 148074114 148074699 -1442338 - LTRIS_Mus LTR ERV1 0 587 1 1 1714 935 82 67 0 chr6 148074699 148074833 -1442204 - MuRRS-int LTR ERV1 0 4690 4548 1 1714 13424 200 21 19 chr6 148074992 148079301 -1437736 - MuRRS-int LTR ERV1 -3078 4478 5 1 1714 4329 72 31 27 chr6 148079303 148079888 -1437149 - LTRIS_Mus LTR ERV1 0 587 1 1 1714 321 312 18 35 chr6 148079908 148080021 -1437016 + PB1D10 SINE Alu 1 111 -6 1 1714 406 240 0 15 chr6 148080197 148080328 -1436709 + GA-rich Low_complexity Low_complexity 1 129 0 1 1714 189 147 0 0 chr6 148080414 148080448 -1436589 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1714 266 279 0 14 chr6 148081804 148081873 -1435164 + B3A SINE B2 113 180 -18 1 1714 225 196 0 0 chr6 148081888 148081944 -1435093 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1714 335 286 10 0 chr6 148081985 148082083 -1434954 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 1714 220 250 25 6 chr6 148082099 148082260 -1434777 + (CA)n Simple_repeat Simple_repeat 1 164 0 1 1714 691 217 58 39 chr6 148082847 148083053 -1433984 + B3 SINE B2 1 210 -6 1 1714 258 32 0 0 chr6 148083422 148083453 -1433584 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1714 746 180 8 15 chr6 148083458 148083588 -1433449 - B1_Mur3 SINE Alu -12 137 9 1 1714 524 314 54 44 chr6 148083613 148083816 -1433221 - B3A SINE B2 0 216 12 1 1714 292 254 68 27 chr6 148083981 148084054 -1432983 + ERVL-int LTR ERVL 1847 1922 -3835 1 1714 290 246 0 0 chr6 148084082 148084143 -1432894 + B4 SINE B4 152 212 -80 1 1714 495 0 0 0 chr6 148084144 148084199 -1432838 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 1714 474 65 0 0 chr6 148084324 148084386 -1432651 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1714 430 265 44 78 chr6 148084570 148084775 -1432262 + ERVL-int LTR ERVL 3510 3707 -2007 1 1714 574 207 137 7 chr6 148085159 148085305 -1431732 + B3 SINE B2 1 165 -51 1 1714 405 0 0 0 chr6 148085307 148085352 -1431685 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1714 2184 227 99 21 chr6 148085444 148086060 -1430977 + L1_Rod LINE L1 3783 4446 -1401 1 1714 1263 219 85 77 chr6 148087362 148087738 -1429299 + MTE2a LTR MaLR 1 379 0 1 1714 477 0 0 0 chr6 148088503 148088556 -1428481 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1714 379 260 50 0 chr6 148088639 148088739 -1428298 - PB1D10 SINE Alu -10 107 3 1 1714 375 352 70 53 chr6 148089322 148089550 -1427487 - MLT1J-int LTR MaLR -306 1081 850 1 1714 268 93 17 78 chr6 148089758 148089874 -1427163 + T-rich Low_complexity Low_complexity 4 112 0 1 1714 686 152 8 0 chr6 148090040 148090165 -1426872 + GA-rich Low_complexity Low_complexity 4 129 0 1 1714 737 68 8 17 chr6 148090292 148090411 -1426626 + L1Md_F2 LINE L1 6454 6571 -11 1 1714 886 191 12 0 chr6 148090455 148090623 -1426414 + B3 SINE B2 2 171 -45 1 1714 645 228 14 14 chr6 148090872 148091019 -1426018 - B1_Mur1 SINE Alu -1 148 2 1 1714 395 186 22 50 chr6 148091264 148091445 -1425592 + GA-rich Low_complexity Low_complexity 3 178 0 1 1714 717 129 17 34 chr6 148092096 148092273 -1424764 + GA-rich Low_complexity Low_complexity 2 175 0 1 1714 483 18 0 0 chr6 148092662 148092718 -1424319 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1714 691 255 120 20 chr6 148093730 148093930 -1423107 - ID_B1 SINE B4 -3 221 2 1 1714 678 110 131 23 chr6 148094142 148094272 -1422765 - MTC LTR MaLR -31 390 247 1 1714 606 167 0 16 chr6 148094750 148094933 -1422104 + CT-rich Low_complexity Low_complexity 1 180 0 1 1714 270 0 0 0 chr6 148094948 148094978 -1422059 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1714 1306 67 84 0 chr6 148095066 148095244 -1421793 + B2_Mm2 SINE B2 2 194 -1 1 1714 2984 98 37 83 chr6 148095396 148095940 -1421097 - MURVY-LTR LTR ERV1 0 519 1 1 1714 246 62 0 0 chr6 148096107 148096139 -1420898 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1714 684 234 7 7 chr6 148096331 148096477 -1420560 - B1_Mm SINE Alu -1 146 1 1 1714 360 0 0 0 chr6 148097400 148097440 -1419597 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 1 1714 633 244 40 96 chr6 148097441 148097618 -1419419 + B3A SINE B2 10 176 -40 1 1714 296 230 24 50 chr6 148097674 148097797 -1419240 - RMER12 LTR ERVK -580 742 633 1 1714 2238 148 72 15 chr6 148097843 148098304 -1418733 - RMER12 LTR ERVK -411 911 425 1 1714 562 106 0 0 chr6 148098351 148098445 -1418592 - Lx3A LINE L1 -3 6978 6885 1 1714 195 42 0 0 chr6 148099505 148099529 -1417508 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1714 372 219 0 0 chr6 148099548 148099612 -1417425 - ID4_ SINE ID -17 66 3 1 1714 1012 291 12 34 chr6 148099827 148100154 -1416883 - MTE2b LTR MaLR -2 377 58 1 1714 1791 123 149 33 chr6 148100775 148101138 -1415899 - RLTR9E LTR ERVK 0 409 5 1 1714 390 212 0 117 chr6 148102166 148102294 -1414743 + MT2B LTR ERVL 154 266 -335 1 1714 896 87 0 0 chr6 148102180 148102307 -1414730 + B1_Mus1 SINE Alu 1 127 -21 1 1714 618 109 0 0 chr6 148102308 148102400 -1414637 + (GA)n Simple_repeat Simple_repeat 2 93 0 1 1714 3773 38 49 0 chr6 148103372 148103825 -1413212 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1714 440 207 86 0 chr6 148103953 148104069 -1412968 + MER2 DNA MER2_type 123 248 -97 1 1714 403 349 57 45 chr6 148104216 148104480 -1412557 - B4 SINE B4 0 292 26 1 1714 532 170 70 0 chr6 148104874 148104974 -1412063 + RSINE1 SINE B4 14 120 -45 1 1714 32 0 0 0 chr6 148105018 148105050 -1411987 + AT_rich Low_complexity Low_complexity 1 32 0 1 1714 277 240 0 29 chr6 148106123 148106226 -1410811 + CT-rich Low_complexity Low_complexity 1 100 0 1 1714 587 246 163 25 chr6 148106820 148107016 -1410021 + ID_B1 SINE B4 2 224 0 1 1714 192 234 0 0 chr6 148107260 148107307 -1409730 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1714 242 360 11 11 chr6 148108545 148108719 -1408318 + (CATG)n Simple_repeat Simple_repeat 2 175 0 1 1714 1469 57 0 0 chr6 148109422 148109597 -1407440 + B2_Mm1a SINE B2 1 175 -18 1 1714 466 189 72 0 chr6 148109614 148109725 -1407312 + B3A SINE B2 3 121 -77 1 1714 222 295 24 8 chr6 148109793 148109916 -1407121 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 1 1714 1930 174 12 69 chr6 148110326 148110733 -1406304 - ORR1C2 LTR MaLR 0 384 1 1 1715 183 246 17 17 chr6 148111623 148111681 -1405356 - L2a LINE L2 -1 3425 3368 1 1715 515 331 129 33 chr6 148112040 148112496 -1404541 - L2 LINE L2 -498 2921 2422 1 1715 546 257 93 110 chr6 148112496 148112732 -1404305 - MTD LTR MaLR -18 401 170 1 1715 1197 148 248 83 chr6 148112734 148113045 -1403992 - ORR1C1 LTR MaLR -15 363 1 1 1715 436 238 21 85 chr6 148113045 148113188 -1403849 - MTD LTR MaLR -267 152 15 1 1715 24 53 0 0 chr6 148113403 148113441 -1403596 + AT_rich Low_complexity Low_complexity 1 38 0 1 1715 803 191 23 0 chr6 148113738 148113869 -1403168 + B1_Mur2 SINE Alu 6 139 -10 1 1715 294 29 0 0 chr6 148113880 148113915 -1403122 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1715 180 218 228 13 chr6 148114304 148114383 -1402654 - MIRm SINE MIR -103 173 78 1 1715 317 214 10 0 chr6 148114383 148114486 -1402551 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 1715 233 264 72 79 chr6 148114642 148114794 -1402243 - CYRA11_Mm Unknown Y-chromosome -295 322 172 1 1715 623 126 40 56 chr6 148114669 148114795 -1402242 + URR1B DNA MER1_type 102 225 0 1 1715 2757 116 40 42 chr6 148114872 148115348 -1401689 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1715 26897 14 3 0 chr6 148115348 148118295 -1398742 - IAPEz-int LTR ERVK 0 6481 3525 1 1715 953 80 24 0 chr6 148118295 148118420 -1398617 - IAPEz-int LTR ERVK -2770 4910 4783 1 1715 1846 115 4 4 chr6 148118415 148118677 -1398360 - IAPEz-int LTR ERVK -5183 2497 2236 1 1715 446 66 0 32 chr6 148118666 148118729 -1398308 - IAPEz-int LTR ERVK -5062 1419 1359 1 1715 3132 79 22 52 chr6 148118729 148119518 -1397519 - IAPEz-int LTR ERVK -5819 662 8 1 1715 2757 116 40 42 chr6 148119518 148119994 -1397043 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1715 225 259 130 85 chr6 148120523 148120541 -1396496 - B2_Mm1t SINE B2 -8 185 1 1 1715 556 311 31 50 chr6 148120541 148120700 -1396337 - RSINE1 SINE B4 -8 157 2 2 1715 272 269 29 88 chr6 148122242 148122344 -1394693 + B4 SINE B4 97 192 -100 2 1715 272 284 104 52 chr6 148123155 148123289 -1393748 - RSINE1 SINE B4 -21 144 4 2 1715 372 107 18 0 chr6 148123845 148123901 -1393136 - HAL1-3A_ME LINE L1 -826 2032 1976 2 1715 414 0 0 0 chr6 148125427 148125473 -1391564 + (CAAAC)n Simple_repeat Simple_repeat 2 47 0 2 1715 1268 29 0 0 chr6 148125917 148126057 -1390980 - B1_Mm SINE Alu -6 141 2 2 1715 1538 152 196 31 chr6 148126225 148126551 -1390486 - ORR1C2 LTR MaLR 0 384 5 2 1715 374 231 139 41 chr6 148127340 148127462 -1389575 - B4A SINE B4 -68 224 91 2 1715 1541 48 26 5 chr6 148127585 148127774 -1389263 - B2_Mm1t SINE B2 0 193 1 2 1715 237 211 0 0 chr6 148128240 148128292 -1388745 + (CACG)n Simple_repeat Simple_repeat 4 55 0 2 1715 23 33 0 0 chr6 148128902 148128932 -1388105 + AT_rich Low_complexity Low_complexity 1 30 0 2 1715 201 392 31 0 chr6 148131033 148131130 -1385907 - MIRb SINE MIR -123 145 46 2 1715 210 288 34 0 chr6 148131893 148131952 -1385085 + PB1D10 SINE Alu 17 77 -40 2 1715 189 0 0 0 chr6 148132924 148132945 -1384092 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1715 691 124 8 23 chr6 148132960 148133092 -1383945 + (CA)n Simple_repeat Simple_repeat 2 131 0 2 1715 2056 103 89 3 chr6 148133726 148134029 -1383008 + ORR1A4 LTR MaLR 1 329 0 2 1715 9720 132 70 148 chr6 148134029 148136156 -1380881 + ORR1A4-int LTR MaLR 1 1963 0 2 1715 2083 101 71 3 chr6 148136156 148136464 -1380573 + ORR1A4 LTR MaLR 1 329 0 2 1715 233 197 209 15 chr6 148137158 148137225 -1379812 + MT2B2 LTR ERVL 161 240 -344 2 1715 351 282 197 0 chr6 148137167 148137284 -1379753 + B1F1 SINE Alu 8 147 -2 2 1715 1356 77 61 0 chr6 148137517 148137698 -1379339 + B2_Mm2 SINE B2 3 194 -1 2 1715 180 0 0 0 chr6 148138120 148138140 -1378897 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 2 1715 429 241 126 27 chr6 148138546 148138657 -1378380 + ID_B1 SINE B4 93 214 -10 2 1715 249 202 214 143 chr6 148139128 148139226 -1377811 - PB1D9 SINE Alu -7 113 9 2 1715 603 294 277 22 chr6 148139545 148140228 -1376809 - Cheshire DNA MER1_type -20 2400 1544 2 1715 966 295 96 112 chr6 148140377 148140655 -1376382 - Cheshire DNA MER1_type -1260 1160 903 2 1715 787 251 40 23 chr6 148140655 148140830 -1376207 - B3A SINE B2 -19 179 2 2 1715 966 295 96 112 chr6 148140830 148141211 -1375826 - Cheshire DNA MER1_type -1518 902 512 2 1715 1189 77 435 106 chr6 148141466 148141643 -1375394 + ORR1A2 LTR MaLR 1 270 -57 2 1715 1229 48 7 0 chr6 148141643 148141788 -1375249 + B1_Mm SINE Alu 2 147 0 2 1715 1189 77 435 106 chr6 148141788 148141856 -1375181 + ORR1A2 LTR MaLR 271 327 0 2 1715 646 180 0 0 chr6 148141861 148141982 -1375055 - B1_Mur2 SINE Alu -11 138 18 2 1715 625 221 270 6 chr6 148145139 148145298 -1371739 + B3 SINE B2 1 201 -15 2 1715 518 254 230 28 chr6 148145301 148145479 -1371558 + B3 SINE B2 3 216 0 2 1715 252 152 121 0 chr6 148145639 148145705 -1371332 + L1MC1 LINE L1 5995 6068 -265 2 1715 319 105 86 17 chr6 148145802 148145860 -1371177 + L1MC1 LINE L1 6257 6318 -15 2 1715 1220 42 21 0 chr6 148145924 148146068 -1370969 + B1_Mm SINE Alu 1 147 0 2 1715 210 37 0 0 chr6 148146070 148146097 -1370940 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1715 210 167 23 23 chr6 148146774 148146817 -1370220 + B3A SINE B2 53 95 -103 2 1715 23 33 0 0 chr6 148146828 148146858 -1370179 + AT_rich Low_complexity Low_complexity 1 30 0 2 1715 422 264 62 18 chr6 148146895 148147007 -1370030 - PB1D10 SINE Alu 0 117 1 2 1715 399 349 27 7 chr6 148147493 148147643 -1369394 - ID_B1 SINE B4 -2 222 70 2 1715 552 274 152 36 chr6 148148410 148148633 -1368404 + B4 SINE B4 36 284 -8 2 1715 21 0 0 0 chr6 148148880 148148901 -1368136 + AT_rich Low_complexity Low_complexity 1 21 0 2 1715 246 343 29 0 chr6 148148929 148149031 -1368006 + ORR1E LTR MaLR 3 107 -252 2 1715 406 292 34 0 chr6 148151231 148151320 -1365717 - B3A SINE B2 -105 93 2 2 1715 692 216 30 0 chr6 148151760 148151894 -1365143 - B1_Mur1 SINE Alu -11 138 1 2 1715 801 252 136 122 chr6 148151974 148152326 -1364711 + ORR1E LTR MaLR 1 357 -2 2 1715 286 328 32 65 chr6 148152705 148152829 -1364208 - MIR SINE MIR -85 177 58 2 1715 270 0 0 0 chr6 148153466 148153496 -1363541 + (CCA)n Simple_repeat Simple_repeat 1 30 0 2 1715 1115 68 0 0 chr6 148153496 148153629 -1363408 - B1_Mus2 SINE Alu -14 133 1 2 1715 22 88 0 0 chr6 148153679 148153736 -1363301 + AT_rich Low_complexity Low_complexity 1 57 0 2 1715 652 219 45 34 chr6 148154205 148154375 -1362662 - ID_B1 SINE B4 -100 192 11 2 1715 219 336 68 8 chr6 148154532 148154664 -1362373 - MIR SINE MIR -25 237 98 2 1715 213 255 0 0 chr6 148155373 148155420 -1361617 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1715 309 51 0 0 chr6 148155420 148155459 -1361578 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1715 313 281 131 46 chr6 148155540 148155693 -1361344 - MER2 DNA MER2_type 0 345 180 2 1715 733 331 92 33 chr6 148155791 148156063 -1360974 - B4A SINE B4 0 292 5 2 1715 199 302 0 0 chr6 148157815 148157858 -1359179 - MIR SINE MIR -194 68 26 2 1715 27 0 0 0 chr6 148158642 148158669 -1358368 + AT_rich Low_complexity Low_complexity 1 27 0 2 1715 1241 68 0 7 chr6 148159163 148159311 -1357726 + B1_Mus1 SINE Alu 1 147 -1 2 1715 267 222 5 42 chr6 148159349 148159417 -1357620 - MIR SINE MIR -99 169 106 2 1715 366 311 60 15 chr6 148161488 148161622 -1355415 + MIR SINE MIR 14 153 -109 2 1715 230 290 97 0 chr6 148162009 148162071 -1354966 - tRNA-Ala-GCG tRNA tRNA -7 68 1 2 1715 1302 41 0 0 chr6 148162359 148162506 -1354531 - B1_Mus1 SINE Alu 0 148 2 2 1715 353 209 83 52 chr6 148162737 148162833 -1354204 - PB1D7 SINE Alu -4 116 18 2 1715 1367 101 14 19 chr6 148162833 148163044 -1353993 + RMER19A LTR ERVK 1 210 -527 2 1715 242 235 38 67 chr6 148163758 148163863 -1353174 - L1M2 LINE L1 -921 5222 5121 2 1715 256 197 0 32 chr6 148164077 148164140 -1352897 + MIR SINE MIR 68 128 -134 2 1715 223 399 47 6 chr6 148164303 148164472 -1352565 + L3 LINE CR1 3233 3408 -1081 2 1715 628 204 33 53 chr6 148164587 148164737 -1352300 - U1 snRNA snRNA -2 163 17 2 1715 446 17 0 33 chr6 148164739 148164799 -1352238 + (TCTCCC)n Simple_repeat Simple_repeat 4 61 0 2 1715 1049 137 14 7 chr6 148166503 148166650 -1350387 - B1_Mur4 SINE Alu -1 149 2 2 1715 236 280 37 43 chr6 148166668 148166832 -1350205 - L1M2 LINE L1 -1736 4404 4242 2 1715 886 226 20 121 chr6 148167384 148167726 -1349311 + RLTR11B LTR ERVK 1 286 -167 2 1715 310 284 19 81 chr6 148167762 148167923 -1349114 + RLTR11B LTR ERVK 277 427 -26 2 1715 609 283 64 0 chr6 148167959 148168132 -1348905 - ID_B1 SINE B4 -39 185 2 2 1715 876 167 52 0 chr6 148168535 148168709 -1348328 + B2_Mm2 SINE B2 7 189 -6 2 1715 313 287 9 44 chr6 148169424 148169537 -1347500 - PB1D9 SINE Alu -11 109 1 2 1715 575 197 211 26 chr6 148169537 148169607 -1347430 - B4 SINE B4 -176 116 18 2 1715 597 263 136 18 chr6 148170694 148170925 -1346112 - ORR1D2 LTR MaLR -98 261 1 2 1715 1706 231 88 40 chr6 148170925 148171476 -1345561 - ORR1D2-int LTR MaLR -53 1527 768 2 1715 390 240 0 37 chr6 148172158 148172266 -1344771 - ID_B1 SINE B4 0 224 121 2 1715 363 282 53 110 chr6 148172940 148173167 -1343870 + MTE2a LTR MaLR 98 311 -68 2 1715 22 35 0 0 chr6 148173670 148173699 -1343338 + AT_rich Low_complexity Low_complexity 1 29 0 2 1715 440 84 58 35 chr6 148174222 148174308 -1342729 - B2_Mm2 SINE B2 0 195 108 2 1715 1338 91 0 50 chr6 148174322 148174520 -1342517 - B2_Mm2 SINE B2 -6 189 2 2 1715 464 188 21 0 chr6 148174839 148174935 -1342102 - B1F2 SINE Alu -51 98 1 2 1715 2839 149 46 22 chr6 148175355 148175856 -1341181 + RMER1B Other Other 541 1053 -13 2 1715 360 0 0 0 chr6 148176634 148176674 -1340363 + (TTG)n Simple_repeat Simple_repeat 3 42 0 2 1715 558 277 90 5 chr6 148177392 148177581 -1339456 + B3 SINE B2 2 206 -10 2 1715 339 332 91 28 chr6 148177594 148177848 -1339189 - Charlie11 DNA MER1_type -536 1660 1391 2 1715 315 289 0 43 chr6 148178097 148178191 -1338846 - PB1D10 SINE Alu -27 90 1 2 1715 231 229 32 126 chr6 148178106 148178201 -1338836 - MT2B2 LTR ERVL -345 239 154 2 1715 280 274 24 12 chr6 148178233 148178318 -1338719 + PB1D10 SINE Alu 21 106 -11 2 1715 4491 119 32 29 chr6 148178575 148179329 -1337708 + RMER6A LTR ERVK 1 756 0 2 1715 255 279 43 14 chr6 148179393 148179462 -1337575 + B3 SINE B2 55 125 -91 2 1715 223 173 19 37 chr6 148180596 148180650 -1336387 + GA-rich Low_complexity Low_complexity 4 56 0 2 1715 767 142 0 0 chr6 148182390 148182517 -1334520 - B1_Mus1 SINE Alu -21 127 1 2 1715 24 53 0 0 chr6 148185120 148185158 -1331879 + AT_rich Low_complexity Low_complexity 1 38 0 2 1715 33 0 0 0 chr6 148185203 148185236 -1331801 + AT_rich Low_complexity Low_complexity 1 33 0 2 1715 805 167 160 37 chr6 148186943 148187130 -1329907 + B3 SINE B2 1 210 -6 2 1715 1104 144 73 44 chr6 148189828 148190103 -1326934 - RMER17C LTR ERVK 0 410 128 2 1715 196 280 140 0 chr6 148190251 148190358 -1326679 + L2a LINE L2 2932 3053 -322 2 1715 398 307 41 31 chr6 148190429 148190487 -1326550 + L2a LINE L2 3204 3264 -162 2 1715 216 0 0 0 chr6 148190487 148190511 -1326526 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1715 398 307 41 31 chr6 148190511 148190647 -1326390 + L2a LINE L2 3265 3399 -27 2 1715 829 242 0 53 chr6 148190869 148191078 -1325959 + B3A SINE B2 1 198 0 2 1715 1713 89 0 41 chr6 148191255 148191578 -1325459 + L1Md_F2 LINE L1 6322 6582 0 2 1715 675 25 0 0 chr6 148192548 148192629 -1324408 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 1715 655 190 109 7 chr6 148192634 148192772 -1324265 - RSINE1 SINE B4 -13 152 1 2 1715 227 288 15 15 chr6 148195008 148195075 -1321962 - ID SINE ID -135 89 23 2 1715 715 199 28 0 chr6 148196287 148196428 -1320609 - B1F SINE Alu -2 147 3 2 1715 369 198 0 0 chr6 148196614 148196700 -1320337 + (CGTG)n Simple_repeat Simple_repeat 1 86 0 3 1715 429 66 0 0 chr6 148196894 148196955 -1320082 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1715 292 274 8 89 chr6 148198478 148198506 -1318531 - B1_Mus2 SINE Alu -7 140 116 3 1715 456 35 0 0 chr6 148198506 148198564 -1318473 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1715 412 203 10 52 chr6 148198564 148198668 -1318369 - B1F SINE Alu -32 117 22 3 1715 956 156 202 0 chr6 148198798 148198971 -1318066 + B3 SINE B2 1 208 -8 3 1715 317 117 42 14 chr6 148199824 148199907 -1317130 - B1_Mus2 SINE Alu -1 148 65 3 1715 476 352 0 0 chr6 148199907 148200069 -1316968 + (CA)n Simple_repeat Simple_repeat 2 163 0 3 1715 360 301 12 0 chr6 148200118 148200201 -1316836 + Lx8 LINE L1 7142 7225 -248 3 1715 360 43 0 0 chr6 148201146 148201192 -1315845 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1715 815 191 172 35 chr6 148201569 148201824 -1315213 + Lx8 LINE L1 7174 7463 -10 3 1715 2832 114 57 90 chr6 148202518 148203065 -1313972 - RLTR24 LTR ERV1 0 529 1 3 1715 461 191 130 38 chr6 148203397 148203528 -1313509 - B4A SINE B4 -44 248 106 3 1715 253 313 12 12 chr6 148203717 148203801 -1313236 - B1F2 SINE Alu -61 88 5 3 1715 366 23 0 0 chr6 148205461 148205504 -1311533 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1715 183 156 0 0 chr6 148205950 148205982 -1311055 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1715 544 270 142 80 chr6 148206034 148206308 -1310729 - B4A SINE B4 0 292 2 3 1715 698 266 98 60 chr6 148206393 148206728 -1310309 + ORR1E LTR MaLR 1 411 -8 3 1715 357 24 0 0 chr6 148207411 148207453 -1309584 + (CAGGG)n Simple_repeat Simple_repeat 1 42 0 3 1715 431 360 6 6 chr6 148208256 148208418 -1308619 + B4A SINE B4 129 290 -2 3 1715 225 246 28 28 chr6 148208449 148208520 -1308517 + MER2 DNA MER2_type 115 185 -160 3 1715 230 330 68 39 chr6 148208823 148209028 -1308009 - L4 LINE RTE -1275 754 544 3 1715 8127 82 12 1 chr6 148210114 148211230 -1305807 + MusHAL1 LINE L1 900 2028 -684 3 1715 328 246 39 47 chr6 148211638 148211766 -1305271 + MTEa LTR MaLR 1 127 -232 3 1715 198 0 0 0 chr6 148211821 148211843 -1305194 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1715 340 253 36 0 chr6 148211874 148211957 -1305080 + MTEa LTR MaLR 294 379 0 3 1715 408 301 47 29 chr6 148212141 148212312 -1304725 - B3A SINE B2 -9 189 16 3 1715 213 39 0 0 chr6 148213227 148213253 -1303784 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1715 920 117 7 58 chr6 148213272 148213427 -1303610 - B1_Mur3 SINE Alu -1 148 2 3 1715 1376 165 77 22 chr6 148213932 148214205 -1302832 + ORR1B2 LTR MaLR 1 288 -79 3 1715 1717 175 48 81 chr6 148214738 148215033 -1302004 + ORR1C1 LTR MaLR 19 323 -55 3 1715 750 135 131 31 chr6 148215033 148215163 -1301874 + B1_Mur4 SINE Alu 3 145 -5 3 1715 1717 175 48 81 chr6 148215163 148215239 -1301798 + ORR1C1 LTR MaLR 324 378 0 3 1715 814 319 25 3 chr6 148215955 148216238 -1300799 + Lx7 LINE L1 6869 7157 -539 3 1715 183 127 70 35 chr6 148216255 148216312 -1300725 + GA-rich Low_complexity Low_complexity 1 59 0 3 1715 684 278 123 40 chr6 148216692 148216943 -1300094 + B4 SINE B4 13 284 -8 3 1715 800 133 22 0 chr6 148217690 148217825 -1299212 - B1_Mus2 SINE Alu -1 146 9 3 1715 195 203 86 86 chr6 148218338 148218419 -1298618 + MIRb SINE MIR 124 204 -64 3 1715 823 222 20 30 chr6 148219226 148219426 -1297611 - B3A SINE B2 0 198 1 3 1715 202 143 41 0 chr6 148220960 148221009 -1296028 + CT-rich Low_complexity Low_complexity 2 52 0 3 1715 252 77 0 0 chr6 148221012 148221051 -1295986 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1715 403 271 63 104 chr6 148221408 148221676 -1295361 + RMER10A LTR ERVL 160 416 -26 3 1715 210 118 0 0 chr6 148221793 148221827 -1295210 + (TATG)n Simple_repeat Simple_repeat 4 37 0 3 1715 886 211 88 23 chr6 148221827 148222078 -1294959 - B4A SINE B4 -23 269 1 3 1715 1790 108 38 41 chr6 148222784 148223103 -1293934 + ORR1A3 LTR MaLR 1 318 -8 3 1715 1313 192 40 208 chr6 148225436 148225884 -1291153 - ORR1D1 LTR MaLR 0 374 2 3 1715 287 366 56 9 chr6 148225985 148226200 -1290837 - MLT2D LTR ERVL -158 256 32 3 1715 1145 199 267 16 chr6 148226403 148226710 -1290327 + ORR1C2 LTR MaLR 1 384 0 3 1715 383 253 38 0 chr6 148226710 148226789 -1290248 + PB1D7 SINE Alu 9 90 -30 3 1715 229 264 159 51 chr6 148227154 148227330 -1289707 + LTR16A LTR ERVL 230 424 -27 3 1715 226 152 0 57 chr6 148227530 148227600 -1289437 + (TATG)n Simple_repeat Simple_repeat 3 68 0 3 1715 730 248 181 95 chr6 148228249 148228597 -1288440 - MTEa LTR MaLR 0 379 2 3 1715 2129 176 27 8 chr6 148228648 148229015 -1288022 + ORR1D1 LTR MaLR 1 374 0 3 1715 1426 253 33 14 chr6 148229045 148229410 -1287627 + Lx8 LINE L1 6328 6699 -774 3 1715 278 254 0 15 chr6 148229647 148229715 -1287322 + CT-rich Low_complexity Low_complexity 3 69 0 3 1715 505 296 0 0 chr6 148229746 148229871 -1287166 - B1F2 SINE Alu -23 126 2 3 1715 22 35 0 0 chr6 148230175 148230204 -1286833 + AT_rich Low_complexity Low_complexity 1 29 0 3 1715 469 172 64 11 chr6 148230569 148230663 -1286374 + PB1D10 SINE Alu 2 100 -17 3 1715 205 209 15 15 chr6 148230712 148230780 -1286257 + GA-rich Low_complexity Low_complexity 4 71 0 3 1715 4161 91 30 35 chr6 148231086 148231690 -1285347 + MT2B LTR ERVL 1 601 0 3 1715 703 236 38 16 chr6 148231797 148231982 -1285055 + ORR1E LTR MaLR 5 193 -166 3 1715 222 273 37 49 chr6 148232830 148232911 -1284126 - B1F1 SINE Alu 0 149 70 3 1715 384 304 63 16 chr6 148232858 148232985 -1284052 + B4 SINE B4 160 292 0 3 1715 185 83 28 0 chr6 148234269 148234305 -1282732 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1715 482 209 41 116 chr6 148234806 148234952 -1282085 + ORR1E LTR MaLR 60 194 -165 3 1715 203 0 37 0 chr6 148235255 148235282 -1281755 + (GGGAGA)n Simple_repeat Simple_repeat 2 29 0 3 1715 654 278 73 73 chr6 148235597 148235927 -1281110 - MLT1B LTR MaLR -5 385 56 3 1715 397 282 89 35 chr6 148236712 148236914 -1280123 - L1M3 LINE L1 -636 5664 5452 3 1715 309 280 0 53 chr6 148237011 148237124 -1279913 - L1M3 LINE L1 -990 5150 5044 3 1715 504 271 214 18 chr6 148237120 148237405 -1279632 + L1MA9 LINE L1 5710 6050 -262 3 1715 1106 159 85 0 chr6 148237818 148238007 -1279030 - B3 SINE B2 -10 206 2 3 1715 1887 130 51 32 chr6 148239753 148240127 -1276910 + RMER6A LTR ERVK 1 381 -375 3 1715 759 25 51 0 chr6 148240168 148240286 -1276751 + (GAAA)n Simple_repeat Simple_repeat 3 126 0 3 1715 240 333 0 0 chr6 148240309 148240429 -1276608 + GA-rich Low_complexity Low_complexity 1 120 0 3 1715 390 121 0 0 chr6 148240441 148240499 -1276538 - Lx3C LINE L1 -108 6865 6808 3 1715 3284 79 25 9 chr6 148240498 148240946 -1276091 + Lx3C LINE L1 6160 6614 -362 3 1715 447 54 162 0 chr6 148240948 148241022 -1276015 + Lx3C LINE L1 6128 6213 -763 3 1715 961 95 106 12 chr6 148241024 148241194 -1275843 - Lx3C LINE L1 -811 6165 5980 3 1715 1674 158 15 76 chr6 148241198 148241326 -1275711 + Lx3C LINE L1 6654 6767 -209 3 1715 516 32 0 0 chr6 148241326 148241388 -1275649 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1715 1674 158 15 76 chr6 148241388 148241601 -1275436 + Lx3C LINE L1 6768 6973 -3 3 1715 387 212 0 0 chr6 148241870 148241955 -1275082 + T-rich Low_complexity Low_complexity 1 85 0 3 1715 343 184 200 20 chr6 148241955 148242055 -1274982 - B1_Mur2 SINE Alu 0 149 32 3 1715 276 255 14 7 chr6 148242187 148242333 -1274704 + (TA)n Simple_repeat Simple_repeat 1 147 0 3 1716 1544 171 86 47 chr6 148243305 148243667 -1273370 + ORR1C2 LTR MaLR 1 376 -8 3 1716 235 232 181 12 chr6 148243748 148243831 -1273206 - RSINE1 SINE B4 -12 153 57 3 1716 584 230 50 83 chr6 148244911 148245129 -1271908 + LTR48B LTR ERV1 1 211 -433 3 1716 284 278 17 100 chr6 148245275 148245395 -1271642 + LTR48B LTR ERV1 678 787 0 3 1716 465 269 34 0 chr6 148245432 148245551 -1271486 - MER58A DNA MER1_type -101 123 1 3 1716 261 0 0 0 chr6 148246195 148246224 -1270813 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 3 1716 423 269 0 0 chr6 148246224 148246317 -1270720 - RSINE1 SINE B4 -34 131 39 3 1716 250 320 74 30 chr6 148247284 148247443 -1269594 + MIRm SINE MIR 17 178 -90 3 1716 2373 87 19 3 chr6 148247923 148248245 -1268792 + MTB_Mm LTR MaLR 1 327 0 3 1716 6688 119 8 80 chr6 148248247 148249430 -1267607 + MTB_Mm-int LTR MaLR 1 1098 0 3 1716 2905 83 2 0 chr6 148249430 148249828 -1267209 + MTB_Mm LTR MaLR 1 399 -8 3 1716 235 96 0 37 chr6 148249881 148249935 -1267102 + (TTTTTG)n Simple_repeat Simple_repeat 4 55 0 3 1716 480 47 0 0 chr6 148249935 148249999 -1267038 - B1_Mm SINE Alu 0 147 84 3 1716 183 100 0 0 chr6 148250550 148250580 -1266457 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1716 200 291 18 0 chr6 148251164 148251219 -1265818 + CT-rich Low_complexity Low_complexity 3 58 0 3 1716 472 150 58 0 chr6 148251365 148251485 -1265552 + GA-rich Low_complexity Low_complexity 1 127 0 3 1716 180 111 0 0 chr6 148251512 148251539 -1265498 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1716 953 32 0 0 chr6 148251981 148252107 -1264930 - L1Md_F3 LINE L1 0 6584 6459 3 1716 581 229 15 37 chr6 148252220 148252356 -1264681 + B1_Mur1 SINE Alu 1 133 -16 3 1716 446 188 0 10 chr6 148252365 148252462 -1264575 + G-rich Low_complexity Low_complexity 1 96 0 3 1716 1771 205 132 9 chr6 148252948 148252976 -1264061 - RLTR20B3 LTR ERVK -67 510 483 3 1716 396 0 0 0 chr6 148252976 148253020 -1264017 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1716 1771 205 132 9 chr6 148253020 148253444 -1263593 - RLTR20B3 LTR ERVK -95 482 3 3 1716 366 301 19 0 chr6 148253741 148253844 -1263193 - ID_B1 SINE B4 -34 190 86 3 1716 708 12 0 0 chr6 148255160 148255241 -1261796 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 1716 26 0 0 0 chr6 148255408 148255434 -1261603 + AT_rich Low_complexity Low_complexity 1 26 0 3 1716 1479 256 23 28 chr6 148255510 148255864 -1261173 + Lx6 LINE L1 6932 7283 -177 4 1716 208 274 0 45 chr6 148256054 148256165 -1260872 + T-rich Low_complexity Low_complexity 5 110 0 4 1716 21 36 0 0 chr6 148256247 148256275 -1260762 + AT_rich Low_complexity Low_complexity 1 28 0 4 1716 257 280 11 21 chr6 148256427 148256522 -1260515 + PB1D9 SINE Alu 27 120 0 4 1716 234 140 20 20 chr6 148256615 148256666 -1260371 + RMER15 LTR ERVL 403 453 -122 4 1716 920 251 36 109 chr6 148257352 148257787 -1259250 - MTD LTR MaLR -14 405 18 4 1716 260 296 64 70 chr6 148258540 148258711 -1258326 + MLT1A LTR MaLR 43 212 -162 4 1716 894 271 111 4 chr6 148258932 148259184 -1257853 + B4 SINE B4 1 279 -13 4 1716 333 235 118 0 chr6 148260503 148260588 -1256449 + B1F1 SINE Alu 1 95 -54 4 1716 2410 127 51 18 chr6 148260588 148260982 -1256055 - MTB_Mm LTR MaLR 0 407 1 4 1716 604 268 116 19 chr6 148261035 148261294 -1255743 - B4A SINE B4 -7 285 2 4 1716 290 163 20 0 chr6 148261674 148261723 -1255314 + RSINE1 SINE B4 3 52 -113 4 1716 351 0 0 0 chr6 148261749 148261788 -1255249 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1716 22 0 0 0 chr6 148261929 148261951 -1255086 + AT_rich Low_complexity Low_complexity 1 22 0 4 1716 232 220 0 0 chr6 148264645 148264695 -1252342 + ID_B1 SINE B4 175 224 0 4 1716 183 80 0 0 chr6 148264957 148264982 -1252055 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1716 250 271 80 24 chr6 148265054 148265179 -1251858 - L2 LINE L2 -632 2787 2656 4 1716 697 312 57 46 chr6 148265500 148265782 -1251255 + B4A SINE B4 1 285 -7 4 1716 210 71 0 0 chr6 148265785 148265813 -1251224 + (CATATA)n Simple_repeat Simple_repeat 5 32 0 4 1716 471 74 24 12 chr6 148267035 148267117 -1249920 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1716 396 0 0 0 chr6 148267230 148267274 -1249763 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1716 370 267 244 49 chr6 148267410 148267686 -1249351 + ORR1E LTR MaLR 4 341 -38 4 1716 14229 55 1 1 chr6 148268261 148270030 -1247007 + L1Md_F2 LINE L1 3817 5586 -297 4 1716 7986 60 4 3 chr6 148270030 148271025 -1246012 + L1Md_F2 LINE L1 5587 6582 0 4 1716 327 65 0 0 chr6 148271793 148271839 -1245198 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1716 497 273 23 0 chr6 148272667 148272795 -1244242 + ID_B1 SINE B4 85 215 -9 4 1716 548 237 99 12 chr6 148273203 148273374 -1243663 + B3A SINE B2 2 187 -11 4 1716 559 298 35 43 chr6 148274490 148274746 -1242291 + MER67B LTR ERV1 1 254 -407 4 1716 598 307 108 8 chr6 148274773 148275032 -1242005 + B4 SINE B4 2 286 -6 4 1716 324 232 111 8 chr6 148275091 148275217 -1241820 + MER67B LTR ERV1 296 434 -227 4 1716 395 252 18 18 chr6 148275224 148275333 -1241704 + MER67B LTR ERV1 553 661 0 4 1716 3542 133 28 21 chr6 148275458 148276036 -1241001 + Lx LINE L1 6070 6651 -3 4 1716 259 279 0 0 chr6 148276122 148276183 -1240854 + MTE2b LTR MaLR 1 61 -318 4 1716 261 238 43 87 chr6 148276180 148276272 -1240765 + MTEa LTR MaLR 290 377 -2 4 1716 1089 56 199 0 chr6 148276286 148276447 -1240590 + B2_Mm1a SINE B2 1 193 0 4 1716 348 83 0 0 chr6 148276447 148276495 -1240542 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1716 321 203 0 51 chr6 148276965 148277043 -1239994 + PB1D7 SINE Alu 41 114 -6 4 1716 1107 267 42 107 chr6 148277364 148277767 -1239270 + MTE2b LTR MaLR 1 377 -2 4 1716 236 215 111 111 chr6 148277917 148278079 -1238958 + L1MC5 LINE L1 7743 7904 -57 4 1716 265 24 48 0 chr6 148278253 148278295 -1238742 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1716 1128 22 0 7 chr6 148278295 148278431 -1238606 - B1_Mus2 SINE Alu -11 136 2 4 1716 656 203 13 71 chr6 148279114 148279268 -1237769 + B1_Mur2 SINE Alu 5 149 0 4 1716 777 252 124 39 chr6 148279737 148280040 -1236997 + MTD LTR MaLR 63 374 0 4 1716 585 262 197 36 chr6 148280605 148280914 -1236123 + ORR1E LTR MaLR 1 359 0 4 1716 299 333 0 20 chr6 148280979 148281080 -1235957 + PB1D7 SINE Alu 3 101 -19 4 1716 2157 131 47 62 chr6 148281752 148282136 -1234901 + ORR1C1 LTR MaLR 1 378 0 4 1716 1188 88 86 17 chr6 148282465 148282639 -1234398 + B2_Mm2 SINE B2 2 187 -8 4 1716 505 234 36 0 chr6 148283067 148283178 -1233859 + PB1D9 SINE Alu 1 115 -5 4 1716 993 90 38 0 chr6 148283633 148283766 -1233271 + B1_Mus1 SINE Alu 3 140 -8 4 1716 270 0 0 0 chr6 148283778 148283808 -1233229 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1716 188 237 33 33 chr6 148284947 148285008 -1232029 + MIR SINE MIR 20 80 -182 4 1716 1991 134 117 18 chr6 148285017 148285506 -1231531 - RMER6A LTR ERVK 0 756 282 4 1716 1445 70 16 0 chr6 148285506 148285692 -1231345 - B2_Mm2 SINE B2 -5 190 2 4 1716 1584 193 69 45 chr6 148285692 148285942 -1231095 - RMER6A LTR ERVK -434 322 69 4 1716 1915 234 44 18 chr6 148285951 148286456 -1230581 + RLTR11A2 LTR ERVK 10 527 0 4 1716 507 75 0 36 chr6 148286456 148286531 -1230506 - RMER6B LTR ERVK -389 72 1 4 1716 210 295 83 10 chr6 148286543 148286639 -1230398 + MIRb SINE MIR 110 212 -56 4 1716 227 103 26 0 chr6 148287460 148287499 -1229538 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 4 1716 3513 70 53 0 chr6 148287502 148287973 -1229064 - Lx3_Mus LINE L1 0 7009 6514 4 1716 375 83 0 0 chr6 148287973 148288021 -1229016 + Lx3_Mus LINE L1 5973 6020 -989 4 1716 9780 61 11 6 chr6 148288014 148289890 -1227147 + Lx3_Mus LINE L1 4673 6559 -450 4 1716 580 218 40 40 chr6 148291180 148291328 -1225709 - B1F1 SINE Alu -1 148 1 4 1716 939 280 56 64 chr6 148292513 148292612 -1224425 + MER31A LTR ERV1 40 133 -352 4 1716 1401 226 111 3 chr6 148292612 148292989 -1224048 + MTD LTR MaLR 2 419 0 4 1716 939 280 56 64 chr6 148292989 148293339 -1223698 + MER31A LTR ERV1 134 485 0 4 1716 1991 153 35 3 chr6 148293654 148294002 -1223035 + ORR1B2 LTR MaLR 1 359 -8 4 1716 653 322 110 0 chr6 148294720 148294956 -1222081 + B4A SINE B4 27 288 -4 4 1716 234 0 0 0 chr6 148294973 148294999 -1222038 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1716 1571 241 38 51 chr6 148295460 148295967 -1221070 - RMER5 LTR ERV1 -10 524 25 4 1716 290 268 100 67 chr6 148296196 148296316 -1220721 - MLT1A1 LTR MaLR -25 383 260 4 1716 508 191 35 6 chr6 148296365 148296473 -1220564 + B1F SINE Alu 1 109 -8 4 1716 683 224 0 0 chr6 148297039 148297164 -1219873 - ID_B1 SINE B4 -11 213 89 4 1716 226 357 34 34 chr6 148298018 148298166 -1218871 - MIR SINE MIR -67 195 48 4 1716 2022 106 26 0 chr6 148299223 148299534 -1217503 + ORR1A2 LTR MaLR 1 319 -8 4 1716 285 299 72 36 chr6 148300200 148300339 -1216698 + MER91A DNA Tip100 25 168 -28 4 1716 564 252 66 7 chr6 148300692 148300828 -1216209 - B1_Mm SINE Alu -1 146 3 4 1716 214 231 0 0 chr6 148301275 148301314 -1215723 + polypyrimidine Low_complexity Low_complexity 1 39 0 4 1716 315 104 0 0 chr6 148302094 148302142 -1214895 + MTB_Mm LTR MaLR 360 407 0 4 1716 801 151 312 6 chr6 148302466 148302639 -1214398 + URR1A DNA MER1_type 1 226 0 4 1716 271 360 63 32 chr6 148302696 148302854 -1214183 + RSINE1 SINE B4 2 164 -1 4 1716 235 270 26 26 chr6 148302854 148302930 -1214107 + (CACG)n Simple_repeat Simple_repeat 4 79 0 4 1716 24 0 0 0 chr6 148304407 148304431 -1212606 + AT_rich Low_complexity Low_complexity 1 24 0 4 1716 828 195 0 7 chr6 148304733 148304883 -1212154 - B1_Mur4 SINE Alu 0 150 2 4 1716 456 252 86 26 chr6 148305144 148305295 -1211742 - B3A SINE B2 -30 168 9 4 1716 389 203 356 20 chr6 148305504 148305650 -1211387 - B3 SINE B2 -20 196 2 4 1716 401 265 29 0 chr6 148305658 148305760 -1211277 - RSINE1 SINE B4 -17 148 44 4 1716 203 171 0 24 chr6 148305821 148305863 -1211174 + MIRb SINE MIR 43 83 -185 4 1716 1231 47 0 0 chr6 148306062 148306210 -1210827 + B1_Mus1 SINE Alu 1 148 0 4 1716 488 279 108 6 chr6 148306215 148306381 -1210656 - ID_B1 SINE B4 -10 214 32 4 1716 373 184 91 64 chr6 148306536 148306646 -1210391 - B1_Mur1 SINE Alu -25 124 12 4 1716 308 288 17 35 chr6 148306546 148306661 -1210376 - B4A SINE B4 -98 194 82 4 1716 347 243 84 49 chr6 148306762 148306905 -1210132 - B1_Mur3 SINE Alu 0 149 2 4 1716 995 96 0 0 chr6 148306905 148307040 -1209997 - B1_Mus1 SINE Alu -11 137 2 4 1716 261 0 0 0 chr6 148307109 148307138 -1209899 + (C)n Simple_repeat Simple_repeat 1 29 0 4 1716 379 335 74 11 chr6 148307176 148307366 -1209671 - B4A SINE B4 -63 229 28 4 1716 369 342 48 18 chr6 148308100 148308329 -1208708 - MARNA DNA Mariner -342 244 9 4 1716 260 284 0 26 chr6 148308670 148308746 -1208291 + CT-rich Low_complexity Low_complexity 4 77 0 4 1716 250 227 212 0 chr6 148308750 148308816 -1208221 - ID4_ SINE ID -2 81 2 4 1716 342 0 0 0 chr6 148308869 148308907 -1208130 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1716 470 200 72 9 chr6 148308958 148309069 -1207968 - B1F SINE Alu -8 141 24 4 1716 407 252 39 47 chr6 148309069 148309081 -1207956 - ID_B1 SINE B4 -2 188 95 4 1716 216 97 0 0 chr6 148309889 148309920 -1207117 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 4 1716 313 318 66 0 chr6 148310184 148310335 -1206702 + L1MB5 LINE L1 5825 5985 -189 4 1716 271 264 22 11 chr6 148310972 148311064 -1205973 - MLT1D LTR MaLR 0 505 413 4 1716 180 0 0 0 chr6 148313021 148313041 -1203996 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1716 364 214 47 37 chr6 148313362 148313469 -1203568 + MTEb LTR MaLR 258 365 -14 5 1716 2201 105 9 55 chr6 148313635 148313978 -1203059 + ORR1A2 LTR MaLR 1 327 0 5 1716 481 298 32 22 chr6 148314358 148314543 -1202494 - MLT2B4 LTR ERVL -357 199 13 5 1716 501 253 44 82 chr6 148314881 148315040 -1201997 + RSINE1 SINE B4 11 163 -2 5 1716 728 190 164 17 chr6 148315303 148315480 -1201557 + ID_B1 SINE B4 1 203 -21 5 1716 540 215 0 86 chr6 148316214 148316331 -1200706 + PB1D9 SINE Alu 1 107 -13 5 1716 21 0 0 0 chr6 148316331 148316352 -1200685 + AT_rich Low_complexity Low_complexity 1 21 0 5 1716 2984 60 0 8 chr6 148316398 148316783 -1200254 + L1Md_F2 LINE L1 6201 6582 0 5 1716 24 0 0 0 chr6 148316860 148316884 -1200153 + AT_rich Low_complexity Low_complexity 1 24 0 5 1716 3177 97 7 0 chr6 148317667 148318101 -1198936 + L1_Mus2 LINE L1 6129 6565 -1 5 1716 249 33 0 0 chr6 148318180 148318210 -1198827 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1716 585 262 6 69 chr6 148318228 148318388 -1198649 - RSINE1 SINE B4 0 165 16 5 1716 588 332 20 15 chr6 148318480 148318679 -1198358 + B4 SINE B4 88 287 -5 5 1716 198 0 0 0 chr6 148318844 148318866 -1198171 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 5 1716 712 205 67 111 chr6 148319185 148319410 -1197627 + B3 SINE B2 2 216 0 5 1716 371 270 182 0 chr6 148319600 148319726 -1197311 + ID_B1 SINE B4 50 198 -26 5 1716 288 77 0 0 chr6 148319743 148319782 -1197255 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 5 1716 729 240 25 35 chr6 148319824 148320023 -1197014 + B3A SINE B2 2 198 0 5 1716 778 298 100 8 chr6 148321159 148321409 -1195628 + B4 SINE B4 2 274 -18 5 1716 342 0 0 0 chr6 148321667 148321705 -1195332 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1716 429 238 28 9 chr6 148321705 148321834 -1195203 - B1F1 SINE Alu -9 140 2 5 1716 21 36 0 0 chr6 148322488 148322516 -1194521 + AT_rich Low_complexity Low_complexity 1 28 0 5 1716 21 36 0 0 chr6 148323454 148323482 -1193555 + AT_rich Low_complexity Low_complexity 1 28 0 5 1716 381 200 43 22 chr6 148324463 148324555 -1192482 + MER34A LTR ERV1 8 101 -470 5 1716 182 236 18 0 chr6 148324739 148324794 -1192243 + CT-rich Low_complexity Low_complexity 54 109 0 5 1716 447 163 66 6 chr6 148324815 148324974 -1192063 + CT-rich Low_complexity Low_complexity 9 178 0 5 1716 1334 61 0 11 chr6 148324974 148325156 -1191881 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 5 1716 255 173 19 19 chr6 148325163 148325216 -1191821 + CT-rich Low_complexity Low_complexity 2 54 0 5 1716 252 271 74 0 chr6 148325233 148325355 -1191682 - Lx7 LINE L1 -4 7692 7562 5 1716 228 67 0 0 chr6 148325377 148325407 -1191630 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1716 5191 220 75 22 chr6 148325418 148326596 -1190441 - Lx7 LINE L1 -334 7362 6123 5 1716 279 0 0 0 chr6 148326753 148326784 -1190253 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1716 24 53 0 0 chr6 148326833 148326871 -1190166 + AT_rich Low_complexity Low_complexity 1 38 0 5 1716 10599 58 5 0 chr6 148327054 148328387 -1188650 - L1_Mm LINE L1 -447 5436 4098 5 1716 1004 48 3 9 chr6 148328369 148328501 -1188536 + L1_Mm LINE L1 5390 5550 -333 5 1716 8117 38 6 6 chr6 148328501 148329473 -1187564 + L1Md_F2 LINE L1 5609 6580 -2 5 1716 513 197 27 68 chr6 148329473 148329487 -1187550 + L1_Mm LINE L1 5519 5530 -317 5 1716 293 326 0 21 chr6 148330367 148330508 -1186529 + (CCA)n Simple_repeat Simple_repeat 1 138 0 5 1716 565 38 25 0 chr6 148330891 148330971 -1186066 + (TC)n Simple_repeat Simple_repeat 2 83 0 5 1716 1074 235 5 0 chr6 148331439 148331652 -1185385 - B3 SINE B2 0 216 3 5 1716 186 217 0 0 chr6 148331896 148331942 -1185095 + MIRc SINE MIR 114 159 -109 5 1716 236 295 0 71 chr6 148332321 148332405 -1184632 + ID4_ SINE ID 5 82 -1 5 1716 251 288 0 14 chr6 148332435 148332509 -1184528 - BC1_Mm scRNA scRNA -63 89 17 5 1716 273 269 18 63 chr6 148332541 148332652 -1184385 - PB1D10 SINE Alu -10 107 2 5 1716 248 229 101 67 chr6 148332832 148332921 -1184116 + MTE2b LTR MaLR 229 320 -59 5 1716 354 265 0 0 chr6 148333852 148333969 -1183068 + CT-rich Low_complexity Low_complexity 1 117 0 5 1716 310 299 34 34 chr6 148334016 148334165 -1182872 - Charlie1a DNA MER1_type -798 657 509 5 1716 447 291 65 16 chr6 148334331 148334516 -1182521 + MLT1A1 LTR MaLR 207 400 -8 5 1716 1596 228 29 21 chr6 148334615 148334991 -1182046 - MTE2a LTR MaLR 0 379 1 5 1716 303 330 28 28 chr6 148335044 148335122 -1181915 + RSINE1 SINE B4 60 139 -26 5 1716 284 0 0 27 chr6 148335122 148335159 -1181878 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1716 303 330 28 28 chr6 148335159 148335186 -1181851 + RSINE1 SINE B4 140 165 0 5 1716 459 287 120 31 chr6 148335246 148335537 -1181500 + Charlie2b DNA MER1_type 1821 2137 -645 5 1716 200 35 35 0 chr6 148335915 148335944 -1181093 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 5 1716 277 149 23 0 chr6 148335944 148336006 -1181031 - B1F SINE Alu -12 137 43 5 1716 370 149 78 33 chr6 148337665 148337755 -1179282 + PB1D9 SINE Alu 27 120 0 5 1716 397 284 11 0 chr6 148338368 148338463 -1178574 + B4A SINE B4 3 98 -194 5 1716 260 299 0 33 chr6 148338514 148338604 -1178433 + B4A SINE B4 186 272 -20 5 1716 237 65 0 0 chr6 148338618 148338649 -1178388 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1716 180 77 0 0 chr6 148339809 148339835 -1177202 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1716 372 303 80 43 chr6 148340333 148340471 -1176566 + B4A SINE B4 32 174 -118 5 1716 486 33 0 0 chr6 148340552 148340612 -1176425 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1716 384 40 0 0 chr6 148342717 148342767 -1174270 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1716 21 82 0 0 chr6 148343394 148343443 -1173594 + AT_rich Low_complexity Low_complexity 1 49 0 5 1716 3463 76 29 0 chr6 148343445 148343893 -1173144 - L1_Mus1 LINE L1 0 6567 6107 5 1716 852 191 121 50 chr6 148343913 148344112 -1172925 - B3 SINE B2 -2 214 2 5 1716 267 311 0 0 chr6 148345373 148345447 -1171590 + (CATG)n Simple_repeat Simple_repeat 3 76 0 5 1716 985 265 52 11 chr6 148346211 148346478 -1170559 + B4 SINE B4 12 289 -3 5 1716 907 249 110 4 chr6 148346995 148347249 -1169788 + B4 SINE B4 3 283 -9 5 1716 195 69 0 0 chr6 148347999 148348028 -1169009 + (GA)n Simple_repeat Simple_repeat 1 29 0 5 1716 222 319 34 0 chr6 148349366 148349476 -1167561 + MIRb SINE MIR 21 137 -131 5 1716 721 253 78 102 chr6 148350636 148351010 -1166027 - MTE2a LTR MaLR -9 370 6 5 1716 304 254 0 0 chr6 148351116 148351179 -1165858 + B1F1 SINE Alu 42 104 -45 5 1716 449 325 30 48 chr6 148351829 148351994 -1165043 + RSINE1 SINE B4 4 165 0 5 1716 241 266 61 37 chr6 148352678 148352760 -1164277 + RSINE1 SINE B4 70 153 -12 5 1716 354 248 188 0 chr6 148352790 148352891 -1164146 + PB1D7 SINE Alu 1 120 0 5 1716 199 258 21 21 chr6 148352908 148353003 -1164034 + GA-rich Low_complexity Low_complexity 1 95 0 5 1716 432 0 0 0 chr6 148353413 148353461 -1163576 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1716 27 29 0 0 chr6 148353569 148353603 -1163434 + AT_rich Low_complexity Low_complexity 1 34 0 5 1716 348 296 50 0 chr6 148354077 148354178 -1162859 + PB1D10 SINE Alu 1 108 -41 5 1716 279 0 0 0 chr6 148354521 148354552 -1162485 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1716 24 32 0 0 chr6 148356147 148356178 -1160859 + AT_rich Low_complexity Low_complexity 1 31 0 5 1716 212 250 31 0 chr6 148356196 148356260 -1160777 + PB1D10 SINE Alu 5 70 -47 5 1716 292 262 38 12 chr6 148356491 148356587 -1160450 + B1F SINE Alu 51 149 0 5 1716 601 236 38 6 chr6 148356890 148357048 -1159989 + RSINE1 SINE B4 1 163 -2 5 1716 24 32 0 0 chr6 148357052 148357083 -1159954 + AT_rich Low_complexity Low_complexity 1 31 0 5 1716 283 75 0 0 chr6 148357105 148357145 -1159892 + tRNA-Gly-GGY tRNA tRNA 1 40 -34 5 1716 240 184 0 0 chr6 148357409 148357458 -1159579 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1716 769 230 181 58 chr6 148357894 148358145 -1158892 - MTD LTR MaLR -15 404 106 5 1716 213 94 0 0 chr6 148358145 148358177 -1158860 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1716 769 230 181 58 chr6 148358177 148358285 -1158752 - MTD LTR MaLR -314 105 2 5 1716 253 279 188 0 chr6 148358757 148358954 -1158083 + MER63D DNA AcHobo 79 312 -749 5 1716 26 0 0 0 chr6 148359157 148359183 -1157854 + AT_rich Low_complexity Low_complexity 1 26 0 5 1716 183 372 62 0 chr6 148359283 148359396 -1157641 - L2b LINE L2 0 3375 3256 5 1716 1265 291 60 1 chr6 148360129 148360587 -1156450 - L1MA4 LINE L1 -1711 5933 5484 5 1716 343 241 93 0 chr6 148361030 148361138 -1155899 + MTEb LTR MaLR 262 379 0 5 1716 521 268 82 23 chr6 148361495 148361693 -1155344 + B3A SINE B2 3 186 -9 5 1716 655 258 53 42 chr6 148362192 148362208 -1154829 - B3A SINE B2 -4 194 182 5 1716 204 40 0 0 chr6 148362208 148362233 -1154804 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1716 450 0 0 0 chr6 148362233 148362282 -1154755 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1716 655 258 53 42 chr6 148362282 148362454 -1154583 - B3A SINE B2 -17 181 4 5 1716 274 292 39 55 chr6 148363024 148363151 -1153886 - MER20 DNA MER1_type 0 219 95 5 1716 230 299 76 64 chr6 148363168 148363325 -1153712 + ORR1C2 LTR MaLR 96 254 -130 5 1716 255 61 0 0 chr6 148364013 148364046 -1152991 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1716 221 338 0 0 chr6 148364591 148364662 -1152375 + ID4_ SINE ID 2 72 -11 5 1716 207 114 0 0 chr6 148364860 148364895 -1152142 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1716 332 343 89 5 chr6 148364955 148365157 -1151880 + L1MD3 LINE L1 6783 7001 -994 5 1716 388 231 0 0 chr6 148365360 148365438 -1151599 + ID2 SINE ID 3 80 -3 5 1716 23 33 0 0 chr6 148365850 148365880 -1151157 + AT_rich Low_complexity Low_complexity 1 30 0 6 1716 42 48 0 0 chr6 148365915 148365978 -1151059 + AT_rich Low_complexity Low_complexity 1 63 0 6 1716 23 54 0 0 chr6 148366071 148366108 -1150929 + AT_rich Low_complexity Low_complexity 1 37 0 6 1716 258 262 19 75 chr6 148366204 148366365 -1150672 + L1MC4 LINE L1 7822 7973 -69 6 1716 949 223 274 6 chr6 148366590 148366919 -1150118 - MTD LTR MaLR 0 419 3 6 1716 4798 98 31 32 chr6 148367557 148368309 -1148728 - RMER17A LTR ERVK 0 751 1 6 1716 494 231 19 0 chr6 148368710 148368818 -1148219 + PB1D10 SINE Alu 1 110 -7 6 1716 291 182 0 0 chr6 148369684 148369761 -1147276 + CT-rich Low_complexity Low_complexity 2 78 0 6 1716 956 270 127 20 chr6 148370040 148370482 -1146555 + MER99 DNA hAT? 281 769 -62 6 1716 761 184 6 0 chr6 148371310 148371468 -1145569 + CT-rich Low_complexity Low_complexity 2 160 0 6 1716 525 197 53 30 chr6 148371917 148372048 -1144989 - ID_B1 SINE B4 -6 218 85 6 1716 192 125 0 0 chr6 148372224 148372256 -1144781 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1716 674 318 32 78 chr6 148372579 148373057 -1143980 - Charlie2a DNA MER1_type -775 2086 1637 6 1716 477 97 0 0 chr6 148373057 148373129 -1143908 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 1716 674 318 32 78 chr6 148373129 148373237 -1143800 - Charlie2a DNA MER1_type -1225 1636 1527 6 1716 189 0 0 0 chr6 148373398 148373419 -1143618 + (ATG)n Simple_repeat Simple_repeat 1 21 0 6 1717 405 0 0 0 chr6 148375076 148375121 -1141916 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1717 739 225 14 0 chr6 148375156 148375294 -1141743 - RSINE1 SINE B4 -22 143 4 6 1717 33 0 0 0 chr6 148375408 148375441 -1141596 + AT_rich Low_complexity Low_complexity 1 33 0 6 1717 1078 155 0 0 chr6 148375534 148375708 -1141329 - URR1B DNA MER1_type -51 174 1 6 1717 401 294 0 18 chr6 148375739 148375850 -1141187 + PB1D10 SINE Alu 2 110 -7 6 1717 933 258 59 33 chr6 148376170 148376475 -1140562 + ORR1D2 LTR MaLR 1 313 -57 6 1717 453 36 0 0 chr6 148376908 148376963 -1140074 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1717 220 339 110 28 chr6 148377381 148377563 -1139474 + L3 LINE CR1 3475 3671 -818 6 1717 233 364 54 0 chr6 148378884 148379013 -1138024 + MTEa LTR MaLR 1 136 -243 6 1717 304 332 108 5 chr6 148379138 148379341 -1137696 + MT2A LTR ERVL 310 533 0 6 1717 363 227 0 0 chr6 148380253 148380381 -1136656 + (CA)n Simple_repeat Simple_repeat 1 128 0 6 1717 519 244 0 0 chr6 148380400 148380663 -1136374 + (CA)n Simple_repeat Simple_repeat 1 263 0 6 1717 369 0 0 0 chr6 148380663 148380704 -1136333 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1717 315 0 0 0 chr6 148380704 148380738 -1136299 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1717 902 228 129 34 chr6 148381508 148381772 -1135265 - B4 SINE B4 -2 290 2 6 1717 3795 2 0 0 chr6 148382534 148382947 -1134090 + L1Md_T LINE L1 6170 6582 0 6 1717 393 22 0 0 chr6 148383541 148383587 -1133450 + (A)n Simple_repeat Simple_repeat 1 46 0 6 1717 1185 62 0 0 chr6 148384043 148384189 -1132848 + B1_Mus2 SINE Alu 2 147 0 6 1717 228 35 0 0 chr6 148384194 148384223 -1132814 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1717 557 260 54 43 chr6 148384239 148384424 -1132613 + B3A SINE B2 2 188 -10 6 1717 230 207 106 35 chr6 148384763 148384848 -1132189 + ORR1E LTR MaLR 99 189 -170 6 1717 222 91 0 0 chr6 148384988 148385021 -1132016 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 6 1717 193 264 132 18 chr6 148385138 148385304 -1131733 - L2a LINE L2 -269 3157 2973 6 1717 807 66 0 0 chr6 148385699 148385805 -1131232 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 6 1717 3793 153 81 9 chr6 148385805 148386457 -1130580 - RMER1B Other Other -22 1044 346 6 1717 387 0 0 0 chr6 148387382 148387425 -1129612 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1717 1063 108 84 22 chr6 148388296 148388475 -1128562 - B2_Mm2 SINE B2 -1 194 5 6 1717 606 302 68 46 chr6 148388625 148389075 -1127962 + L1MD2 LINE L1 5754 6214 -145 6 1717 964 168 16 16 chr6 148389075 148389269 -1127768 - MTC LTR MaLR -227 194 1 6 1717 629 229 27 20 chr6 148389343 148389490 -1127547 + B1F SINE Alu 1 148 -1 6 1717 1145 75 0 7 chr6 148389757 148389904 -1127133 + B1_Mus2 SINE Alu 2 147 0 6 1717 725 208 16 135 chr6 148389969 148390303 -1126734 - MTD LTR MaLR -14 405 20 6 1717 255 191 0 0 chr6 148390303 148390366 -1126671 + A-rich Low_complexity Low_complexity 1 63 0 6 1717 29 60 0 0 chr6 148392661 148392711 -1124326 + GC_rich Low_complexity Low_complexity 1 50 0 6 1717 213 330 9 35 chr6 148393525 148393641 -1123396 - B1_Mur2 SINE Alu 0 149 37 6 1717 299 44 22 0 chr6 148394289 148394334 -1122703 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1717 432 0 0 0 chr6 148394437 148394485 -1122552 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1717 648 248 177 21 chr6 148395462 148395705 -1121332 + MER31A LTR ERV1 6 286 -199 6 1717 417 314 59 35 chr6 148395689 148395943 -1121094 - ORR1E LTR MaLR -5 354 95 6 1717 650 226 14 61 chr6 148395956 148395998 -1121039 + MER31A LTR ERV1 279 317 -168 6 1717 279 0 0 0 chr6 148395998 148396029 -1121008 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1717 650 226 14 61 chr6 148396029 148396198 -1120839 + MER31A LTR ERV1 318 480 -5 6 1717 1045 167 20 10 chr6 148396775 148396975 -1120062 - B3 SINE B2 -5 211 10 6 1717 302 232 168 9 chr6 148398126 148398239 -1118798 + MER45R DNA Tip100 603 733 -848 6 1717 812 281 42 23 chr6 148398261 148398570 -1118467 + MER45R DNA Tip100 829 1143 -438 6 1717 180 111 0 0 chr6 148398586 148398613 -1118424 + (ATG)n Simple_repeat Simple_repeat 1 27 0 6 1717 402 57 0 0 chr6 148399034 148399087 -1117950 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1717 231 146 0 0 chr6 148399172 148399213 -1117824 + (CCCCCT)n Simple_repeat Simple_repeat 1 41 0 6 1717 280 291 13 0 chr6 148399654 148399733 -1117304 - MER63D DNA AcHobo -953 108 29 6 1717 233 240 143 26 chr6 148399849 148399926 -1117111 + MER77 LTR ERVL 49 134 -473 6 1717 768 174 339 0 chr6 148399968 148400204 -1116833 - RMER19C LTR ERVK -295 316 1 6 1717 645 198 0 0 chr6 148400204 148400315 -1116722 + B3 SINE B2 88 198 -18 6 1717 216 0 0 0 chr6 148400315 148400339 -1116698 + (TAAAA)n Simple_repeat Simple_repeat 5 28 0 6 1717 346 268 117 18 chr6 148400358 148400529 -1116508 + MER34A LTR ERV1 375 562 -9 6 1717 368 335 49 42 chr6 148400592 148400879 -1116158 + MER77 LTR ERVL 315 603 -4 6 1717 548 300 11 27 chr6 148401676 148401861 -1115176 - ID_B1 SINE B4 0 224 43 6 1717 860 227 80 5 chr6 148404135 148404334 -1112703 - B3 SINE B2 0 216 3 6 1717 2744 130 86 17 chr6 148406410 148406508 -1110529 - RLTR20B2 LTR ERVK 0 560 465 6 1717 375 41 0 0 chr6 148406508 148406557 -1110480 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1717 2744 130 86 17 chr6 148406557 148406982 -1110055 - RLTR20B2 LTR ERVK -96 464 1 6 1717 240 171 0 0 chr6 148407217 148407258 -1109779 + RMER30 DNA MER1_type 12 52 -150 6 1717 243 102 102 0 chr6 148407314 148407402 -1109635 + (TTAGG)n Simple_repeat Simple_repeat 1 97 0 6 1717 1183 88 0 0 chr6 148408768 148408916 -1108121 + B1_Mus1 SINE Alu 1 148 0 6 1717 754 177 13 0 chr6 148408959 148409117 -1107920 + CT-rich Low_complexity Low_complexity 1 160 0 6 1717 375 305 84 58 chr6 148410307 148410568 -1106469 + L1M4 LINE L1 3441 3708 -2438 6 1717 742 275 10 16 chr6 148410635 148410827 -1106210 - B3A SINE B2 -6 192 2 6 1717 837 237 24 5 chr6 148411399 148411611 -1105426 + B4 SINE B4 2 217 -75 6 1717 748 20 40 0 chr6 148411614 148411714 -1105323 + (GGAA)n Simple_repeat Simple_repeat 2 105 0 6 1717 432 0 0 0 chr6 148411720 148411768 -1105269 + (GGAGA)n Simple_repeat Simple_repeat 1 48 0 6 1717 431 242 0 42 chr6 148412987 148413082 -1103955 - B1F1 SINE Alu -23 126 36 6 1717 568 261 62 0 chr6 148413245 148413440 -1103597 - L1MA5 LINE L1 0 6300 6094 6 1717 558 304 52 76 chr6 148414420 148414748 -1102289 + ORR1E LTR MaLR 1 320 -39 6 1717 749 67 10 0 chr6 148414765 148414869 -1102168 + (TTCC)n Simple_repeat Simple_repeat 2 106 0 6 1717 204 219 24 0 chr6 148414869 148414910 -1102127 + CT-rich Low_complexity Low_complexity 1 42 0 6 1717 300 405 0 16 chr6 148414910 148415038 -1101999 - PB1 SINE Alu -1 126 1 6 1717 712 232 78 86 chr6 148415172 148415427 -1101610 - MTE2a LTR MaLR 0 379 127 6 1717 569 230 51 15 chr6 148415502 148415639 -1101398 - B1_Mur1 SINE Alu -2 147 6 6 1717 234 0 0 0 chr6 148416030 148416056 -1100981 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1717 607 290 13 8 chr6 148417307 148417462 -1099575 + ID_B1 SINE B4 81 233 -59 6 1717 552 30 0 0 chr6 148418689 148418755 -1098282 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1717 829 316 18 22 chr6 148418775 148419047 -1097990 - B4A SINE B4 -18 274 4 6 1717 300 378 7 0 chr6 148420221 148420372 -1096665 - MLT2D LTR ERVL -262 152 1 6 1717 645 294 136 8 chr6 148420507 148420764 -1096273 + B4 SINE B4 1 290 -2 6 1717 322 363 0 10 chr6 148420764 148420867 -1096170 + ID_B1 SINE B4 82 183 -41 6 1717 261 0 0 0 chr6 148420892 148420921 -1096116 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1717 500 262 282 19 chr6 148421216 148421539 -1095498 - MLT1A1 LTR MaLR 0 408 1 6 1717 289 40 19 39 chr6 148421544 148421596 -1095441 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 1717 525 301 125 24 chr6 148422684 148422973 -1094064 + LTR50 LTR ERVL 4 321 -474 6 1717 248 297 115 44 chr6 148423101 148423284 -1093753 + L1M5 LINE L1 4105 4300 -1846 6 1717 378 0 0 0 chr6 148424493 148424535 -1092502 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1717 640 258 70 35 chr6 148424567 148424768 -1092269 - B4 SINE B4 -42 250 43 6 1717 244 305 0 0 chr6 148424794 148424853 -1092184 - B4 SINE B4 -228 64 6 6 1717 340 207 12 12 chr6 148426014 148426097 -1090940 + B4 SINE B4 2 84 -208 7 1717 204 67 0 0 chr6 148426261 148426291 -1090746 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1717 189 0 0 0 chr6 148426492 148426513 -1090524 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1717 2518 43 12 0 chr6 148426582 148426909 -1090128 + IAPEY_LTR LTR ERVK 55 385 0 7 1717 21 0 0 0 chr6 148427484 148427505 -1089532 + AT_rich Low_complexity Low_complexity 1 21 0 7 1717 407 264 79 0 chr6 148427750 148427890 -1089147 - LTR37B LTR ERV1 -1 467 317 7 1717 1608 150 113 13 chr6 148428297 148428669 -1088368 + RMER17C LTR ERVK 2 410 0 7 1717 223 270 15 31 chr6 148428687 148428752 -1088285 + B4A SINE B4 6 69 -223 7 1717 288 0 0 0 chr6 148428824 148428856 -1088181 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1717 882 241 150 53 chr6 148429150 148429584 -1087453 - L1MA9 LINE L1 -18 6294 5819 7 1717 558 197 24 52 chr6 148429586 148429734 -1087303 - B1F SINE Alu 0 149 3 7 1717 522 0 0 0 chr6 148429821 148429879 -1087158 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1717 346 247 20 51 chr6 148429890 148429988 -1087049 + B1F SINE Alu 21 115 -34 7 1717 190 326 0 0 chr6 148430772 148430821 -1086216 + L2a LINE L2 3111 3159 -267 7 1717 1155 71 0 6 chr6 148431399 148431569 -1085468 + L1_Mus4 LINE L1 6468 6636 0 7 1717 302 264 108 8 chr6 148432458 148432588 -1084449 - MER57D LTR ERV1 0 411 269 7 1717 298 292 75 0 chr6 148432658 148432764 -1084273 - MER57D LTR ERV1 -215 157 44 7 1717 1009 237 68 11 chr6 148432795 148433060 -1083977 - B4A SINE B4 -11 281 2 7 1717 268 254 15 15 chr6 148433927 148433995 -1083042 + ORR1B2 LTR MaLR 2 69 -298 7 1717 510 270 36 116 chr6 148433970 148434221 -1082816 - RMER5 LTR ERV1 -288 246 16 7 1717 418 278 58 36 chr6 148434458 148434596 -1082441 - B1F SINE Alu -8 141 1 7 1717 645 49 0 0 chr6 148435625 148435706 -1081331 + (TG)n Simple_repeat Simple_repeat 2 82 0 7 1717 236 182 23 0 chr6 148436877 148436921 -1080116 + CT-rich Low_complexity Low_complexity 1 45 0 7 1717 243 0 0 0 chr6 148436924 148436951 -1080086 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 7 1717 317 257 0 14 chr6 148436977 148437048 -1079989 - ID4_ SINE ID -8 75 6 7 1717 370 321 6 105 chr6 148437201 148437350 -1079687 - RSINE1 SINE B4 0 165 34 7 1717 4108 53 8 4 chr6 148437350 148437862 -1079175 - L1Md_F2 LINE L1 -1 6581 6068 7 1717 370 321 6 105 chr6 148437862 148437893 -1079144 - RSINE1 SINE B4 -132 33 3 7 1717 2141 112 24 3 chr6 148438609 148438940 -1078097 - Lx LINE L1 -3 6651 6314 7 1717 605 106 32 24 chr6 148439126 148439252 -1077785 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 7 1717 2023 131 168 8 chr6 148440124 148440487 -1076550 - MTC LTR MaLR 0 421 1 7 1717 355 204 66 1 chr6 148440504 148440606 -1076431 - MER5A DNA MER1_type -75 114 8 7 1717 262 279 77 86 chr6 148440774 148441068 -1075969 + ORR1C2 LTR MaLR 6 300 -84 7 1717 187 347 133 0 chr6 148441263 148441338 -1075699 + L2b LINE L2 3262 3346 -29 7 1717 182 292 32 43 chr6 148441703 148441796 -1075241 - L2a LINE L2 0 3426 3335 7 1717 341 310 216 11 chr6 148442008 148442193 -1074844 + ID_B1 SINE B4 2 224 0 7 1717 371 132 15 0 chr6 148442193 148442261 -1074776 + (GAAA)n Simple_repeat Simple_repeat 1 69 0 7 1717 205 313 108 0 chr6 148443217 148443300 -1073737 + MIR SINE MIR 81 172 -90 7 1717 597 241 109 0 chr6 148444574 148444711 -1072326 - RSINE1 SINE B4 -2 163 12 7 1717 22 0 0 0 chr6 148445018 148445040 -1071997 + AT_rich Low_complexity Low_complexity 1 22 0 7 1717 750 241 102 0 chr6 148445289 148445455 -1071582 + B4A SINE B4 108 290 -2 7 1717 203 324 0 53 chr6 148445461 148445536 -1071501 + (CATG)n Simple_repeat Simple_repeat 2 72 0 7 1717 228 304 0 0 chr6 148445467 148445523 -1071514 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1717 230 233 0 0 chr6 148446819 148446862 -1070175 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1717 424 312 9 0 chr6 148447438 148447550 -1069487 + ID_B1 SINE B4 112 224 0 7 1717 1182 222 162 6 chr6 148447727 148448054 -1068983 - MTE2b LTR MaLR 0 379 2 7 1717 222 363 77 31 chr6 148448800 148448996 -1068041 + L2a LINE L2 2919 3123 -303 7 1717 582 237 122 0 chr6 148449790 148449929 -1067108 + B3A SINE B2 5 160 -38 7 1717 260 254 15 15 chr6 148450535 148450603 -1066434 - RSINE1 SINE B4 -94 71 4 7 1717 2409 90 15 58 chr6 148450876 148451218 -1065819 + ORR1A2 LTR MaLR 1 327 0 7 1717 291 274 50 150 chr6 148451823 148451943 -1065094 + RCHARR1 DNA MER1_type 4 111 -863 7 1717 1189 250 29 0 chr6 148451974 148452250 -1064787 + RCHARR1 DNA MER1_type 185 468 -506 7 1717 840 197 69 37 chr6 148452252 148452468 -1064569 + RCHARR1 DNA MER1_type 752 974 0 7 1717 261 0 0 0 chr6 148452706 148452735 -1064302 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1717 355 172 0 0 chr6 148452828 148452892 -1064145 + ID_B1 SINE B4 161 224 0 7 1717 21 36 0 0 chr6 148453828 148453856 -1063181 + AT_rich Low_complexity Low_complexity 1 28 0 7 1717 1465 189 151 6 chr6 148454960 148455279 -1061758 - ORR1D1 LTR MaLR 0 374 10 7 1717 252 0 0 0 chr6 148455279 148455307 -1061730 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7 1717 490 302 71 7 chr6 148455728 148455868 -1061169 + ID_B1 SINE B4 63 211 -13 7 1717 902 78 0 8 chr6 148455869 148455998 -1061039 + (GAGAA)n Simple_repeat Simple_repeat 2 129 0 7 1717 279 0 0 0 chr6 148456026 148456057 -1060980 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 7 1717 254 271 0 0 chr6 148456812 148456871 -1060166 + ID_B1 SINE B4 159 217 -7 7 1717 327 326 61 0 chr6 148456905 148457003 -1060034 + PB1D7 SINE Alu 5 108 -12 7 1717 349 381 52 61 chr6 148457746 148458056 -1058981 + ORR1E LTR MaLR 1 307 -52 7 1717 2259 150 67 22 chr6 148458708 148459110 -1057927 + MTC LTR MaLR 2 421 0 7 1717 683 275 171 10 chr6 148459127 148459436 -1057601 + ORR1E LTR MaLR 1 359 0 7 1717 301 177 39 46 chr6 148459519 148459649 -1057388 + (TTATA)n Simple_repeat Simple_repeat 3 131 0 7 1717 375 154 0 0 chr6 148459653 148459718 -1057319 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 1717 21 0 0 0 chr6 148459884 148459905 -1057132 + AT_rich Low_complexity Low_complexity 1 21 0 7 1717 41 87 0 0 chr6 148460463 148460567 -1056470 + AT_rich Low_complexity Low_complexity 1 104 0 7 1717 708 193 88 58 chr6 148461268 148461439 -1055598 + MTEa LTR MaLR 100 275 -104 7 1717 448 250 98 8 chr6 148462538 148462671 -1054366 + MTEa LTR MaLR 22 166 -213 7 1717 257 247 12 0 chr6 148463950 148464031 -1053006 - L1MA5 LINE L1 -6 6294 6213 7 1717 268 329 0 0 chr6 148464134 148464213 -1052824 - RMER15 LTR ERVL -105 470 392 7 1717 1137 230 88 107 chr6 148464349 148464733 -1052304 - MTEa LTR MaLR -2 377 1 7 1717 568 280 145 65 chr6 148464952 148465082 -1051955 + L1MA7 LINE L1 5782 5906 -385 7 1717 1132 238 91 32 chr6 148465082 148465421 -1051616 - ORR1E LTR MaLR 0 359 1 7 1717 568 280 145 65 chr6 148465421 148465737 -1051300 + L1MA7 LINE L1 5907 6264 -27 7 1717 241 307 76 42 chr6 148465978 148466097 -1050940 - B1_Mm SINE Alu -24 123 1 7 1717 189 0 53 53 chr6 148466975 148467013 -1050024 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 7 1717 842 166 50 0 chr6 148467027 148467166 -1049871 - B1F SINE Alu 0 149 4 7 1717 5602 147 104 35 chr6 148467182 148468153 -1048884 + RMER12 LTR ERVK 1 1058 -264 7 1717 3619 18 23 0 chr6 148468153 148468540 -1048497 + MTA_Mm LTR MaLR 1 396 0 7 1717 5602 147 104 35 chr6 148468540 148468664 -1048373 + RMER12 LTR ERVK 1059 1171 -151 7 1717 21 0 0 0 chr6 148468777 148468798 -1048239 + AT_rich Low_complexity Low_complexity 1 21 0 7 1717 1159 69 21 0 chr6 148468799 148468944 -1048093 + B1_Mus1 SINE Alu 1 148 0 7 1717 501 311 195 25 chr6 148470658 148471064 -1045973 + MLT1C LTR MaLR 27 501 -4 7 1717 713 269 136 28 chr6 148471076 148471393 -1045644 + ORR1E LTR MaLR 5 355 -4 7 1717 881 222 20 50 chr6 148472050 148472249 -1044788 + B3A SINE B2 6 198 0 7 1717 270 332 59 23 chr6 148472494 148472624 -1044413 - MLT1E3 LTR MaLR -60 564 433 7 1717 518 315 100 36 chr6 148472677 148472927 -1044110 - MLT1E3 LTR MaLR -300 324 59 7 1717 422 265 10 10 chr6 148473392 148473491 -1043546 + B4 SINE B4 192 290 -2 7 1717 462 294 82 53 chr6 148473553 148473655 -1043382 + Tigger5 DNA MER2_type 51 158 -2248 7 1717 1792 183 157 6 chr6 148473655 148473980 -1043057 - ORR1D1 LTR MaLR 0 374 1 7 1717 462 294 82 53 chr6 148473980 148474085 -1042952 + Tigger5 DNA MER2_type 159 264 -2142 7 1717 299 330 26 9 chr6 148474088 148474201 -1042836 + Tigger5 DNA MER2_type 2177 2291 -115 7 1717 267 31 0 0 chr6 148475845 148475877 -1041160 + (TA)n Simple_repeat Simple_repeat 2 33 0 7 1717 488 262 79 0 chr6 148476058 148476184 -1040853 + B1F1 SINE Alu 1 136 -13 7 1717 234 0 0 0 chr6 148476184 148476210 -1040827 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 7 1717 907 151 14 0 chr6 148476414 148476553 -1040484 - B1_Mur2 SINE Alu 0 149 9 7 1717 387 60 0 0 chr6 148476555 148476605 -1040432 + (CCCTAA)n Simple_repeat Simple_repeat 3 52 0 7 1717 239 330 71 27 chr6 148476633 148476745 -1040292 - MIR SINE MIR -143 133 17 7 1717 189 266 76 30 chr6 148477519 148477585 -1039452 - L4 LINE RTE -425 1604 1536 7 1717 1449 246 118 6 chr6 148477740 148478079 -1038958 - MTEa LTR MaLR 0 379 3 7 1717 181 114 57 0 chr6 148478079 148478114 -1038923 - L2 LINE L2 -2602 817 781 7 1717 242 200 32 48 chr6 148478488 148478551 -1038486 + ID_B1 SINE B4 157 218 -6 7 1717 24 53 0 0 chr6 148478899 148478937 -1038100 + AT_rich Low_complexity Low_complexity 1 38 0 7 1717 370 219 9 111 chr6 148480421 148480529 -1036508 - PB1D10 SINE Alu -1 116 20 7 1717 180 0 0 0 chr6 148480532 148480552 -1036485 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1717 532 284 12 31 chr6 148481023 148481183 -1035854 + RSINE1 SINE B4 5 161 -4 8 1717 49 18 0 0 chr6 148481211 148481267 -1035770 + AT_rich Low_complexity Low_complexity 1 56 0 8 1717 667 286 5 14 chr6 148481595 148481756 -1035281 - B4A SINE B4 -67 225 67 8 1717 225 274 0 0 chr6 148481733 148481784 -1035253 - PB1D9 SINE Alu -68 52 2 8 1717 225 274 0 0 chr6 148481784 148481833 -1035204 - B1F2 SINE Alu -99 50 2 8 1717 223 273 0 0 chr6 148481833 148481883 -1035154 - PB1D9 SINE Alu -70 50 1 8 1717 291 286 12 12 chr6 148481919 148482004 -1035033 - B4 SINE B4 -206 86 2 8 1717 468 51 0 0 chr6 148482193 148482252 -1034785 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1717 252 170 0 17 chr6 148482354 148482418 -1034619 - L1ME1 LINE L1 0 6179 6118 8 1717 205 214 18 18 chr6 148482742 148482799 -1034238 + GA-rich Low_complexity Low_complexity 4 60 0 8 1717 201 94 0 0 chr6 148483478 148483510 -1033527 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 8 1717 302 211 123 0 chr6 148483522 148483579 -1033458 - ID4 SINE ID -17 66 3 8 1717 465 92 0 0 chr6 148483721 148483797 -1033240 + (TC)n Simple_repeat Simple_repeat 1 76 0 8 1717 21 0 0 0 chr6 148483822 148483843 -1033194 + AT_rich Low_complexity Low_complexity 1 21 0 8 1717 2632 119 60 18 chr6 148484026 148484558 -1032479 + RMER6A LTR ERVK 1 615 -75 8 1717 207 289 0 0 chr6 148485150 148485233 -1031804 + (TG)n Simple_repeat Simple_repeat 2 84 0 8 1717 972 274 63 0 chr6 148485570 148485825 -1031212 - MTEb LTR MaLR -2 377 107 8 1717 668 279 18 92 chr6 148485791 148486008 -1031029 + B4A SINE B4 92 292 0 8 1717 504 0 0 0 chr6 148486237 148486293 -1030744 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1717 272 177 27 18 chr6 148486320 148486384 -1030653 - B2_Mm2 SINE B2 -102 114 47 8 1717 1056 126 64 23 chr6 148486435 148486606 -1030431 - B2_Mm1t SINE B2 -14 179 2 8 1717 536 269 282 5 chr6 148487138 148487351 -1029686 - B4A SINE B4 -18 274 3 8 1717 203 0 0 36 chr6 148489029 148489057 -1027980 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1717 227 93 23 0 chr6 148489203 148489246 -1027791 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 8 1717 1205 82 7 0 chr6 148489259 148489405 -1027632 - B1_Mus1 SINE Alu -1 147 1 8 1717 25 51 0 0 chr6 148489409 148489448 -1027589 + AT_rich Low_complexity Low_complexity 1 39 0 8 1717 207 102 82 0 chr6 148489826 148489875 -1027162 + (CAGG)n Simple_repeat Simple_repeat 3 55 0 8 1717 180 143 0 0 chr6 148490130 148490172 -1026865 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 8 1717 735 278 11 11 chr6 148490240 148490422 -1026615 - ID_B1 SINE B4 -2 222 41 8 1717 421 312 18 0 chr6 148490404 148490513 -1026524 - ID_B1 SINE B4 -109 115 5 8 1717 227 198 254 36 chr6 148490710 148490820 -1026217 + MLT1G LTR MaLR 451 584 -7 8 1717 199 308 138 0 chr6 148492749 148492814 -1024223 - MIR SINE MIR -17 245 172 8 1717 1155 81 0 45 chr6 148493095 148493114 -1023923 - B1_Mus1 SINE Alu 0 148 136 8 1717 315 0 0 0 chr6 148493114 148493149 -1023888 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 8 1717 1155 81 0 45 chr6 148493149 148493284 -1023753 - B1_Mus1 SINE Alu -13 135 1 8 1717 274 359 23 4 chr6 148494385 148494507 -1022530 - MIRb SINE MIR -144 124 2 8 1717 307 259 347 10 chr6 148495257 148495456 -1021581 + RMER15 LTR ERVL 300 565 -10 8 1717 567 268 147 56 chr6 148495551 148495932 -1021105 + RMER5 LTR ERV1 59 518 -16 8 1717 198 0 0 0 chr6 148496550 148496572 -1020465 + (G)n Simple_repeat Simple_repeat 1 22 0 8 1717 325 311 132 0 chr6 148497330 148497497 -1019540 + L1MDa LINE L1 79 267 -6366 8 1717 305 296 11 0 chr6 148497558 148497646 -1019391 + L1MDa LINE L1 294 382 -6251 8 1717 504 81 0 0 chr6 148497659 148497733 -1019304 + (GA)n Simple_repeat Simple_repeat 1 74 0 8 1717 359 320 35 152 chr6 148497953 148498440 -1018597 + L1MDa LINE L1 671 1100 -5533 8 1717 636 175 0 0 chr6 148498463 148498589 -1018448 + (CA)n Simple_repeat Simple_repeat 2 127 0 8 1717 220 258 95 16 chr6 148499707 148499770 -1017267 - MIR SINE MIR -103 105 38 8 1717 449 210 168 10 chr6 148500066 148500167 -1016870 + PB1D7 SINE Alu 1 117 -3 1 1717 576 218 0 0 chr6 148500490 148500623 -1016414 + (TA)n Simple_repeat Simple_repeat 2 134 0 2 1717 1147 58 65 0 chr6 148500746 148500884 -1016153 - B1_Mm SINE Alu 0 147 1 3 1717 738 270 119 12 chr6 148501268 148501512 -1015525 + B4A SINE B4 1 270 -22 4 1717 839 56 16 0 chr6 148501543 148501668 -1015369 + (CAGAGA)n Simple_repeat Simple_repeat 6 132 0 5 1717 639 159 0 0 chr6 148501720 148501833 -1015204 + (TA)n Simple_repeat Simple_repeat 2 114 0 6 1717 287 299 0 0 chr6 148502275 148502342 -1014695 + MLT1G1 LTR MaLR 5 71 -524 7 1717 359 344 77 0 chr6 148502507 148502702 -1014335 + MLT1G1 LTR MaLR 326 535 -44 7 1717 792 314 54 18 chr6 148503261 148503595 -1013442 + MLT1A0 LTR MaLR 14 359 -6 8 1717 1619 244 77 3 chr6 148503728 148504077 -1012960 + MTEa LTR MaLR 3 377 -2 9 1717 23 0 0 0 chr6 148504483 148504506 -1012531 + AT_rich Low_complexity Low_complexity 1 23 0 1 1718 273 98 0 0 chr6 148505381 148505422 -1011615 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1718 1368 195 118 11 chr6 148505426 148505706 -1011331 - MTD LTR MaLR 0 419 110 1 1718 391 185 96 21 chr6 148505823 148505917 -1011120 - MTD LTR MaLR -319 102 2 1 1718 241 291 112 62 chr6 148505918 148506160 -1010877 - RMER12 LTR ERVK -333 989 736 1 1718 235 299 23 35 chr6 148506163 148506336 -1010701 + (CATA)n Simple_repeat Simple_repeat 4 174 0 1 1718 236 305 30 8 chr6 148506295 148506427 -1010610 + (CA)n Simple_repeat Simple_repeat 2 136 0 1 1718 11923 61 11 1 chr6 148506641 148508806 -1008231 - L1Md_F2 LINE L1 0 6582 4396 1 1718 4521 52 0 0 chr6 148508805 148509359 -1007678 + L1Md_F2 LINE L1 3854 4407 -1476 1 1718 351 272 7 7 chr6 148510081 148510390 -1006647 + (TTGG)n Simple_repeat Simple_repeat 1 309 0 1 1718 1112 271 47 7 chr6 148511496 148511771 -1005266 - B4A SINE B4 -6 286 1 1 1718 198 0 0 0 chr6 148511913 148511935 -1005102 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1718 447 19 0 0 chr6 148511935 148511986 -1005051 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1718 272 263 0 17 chr6 148512091 148512149 -1004888 - Tigger5 DNA MER2_type -4 2402 2346 2 1718 931 226 106 0 chr6 148513221 148513420 -1003617 - ID_B1 SINE B4 -4 220 1 2 1718 644 315 42 25 chr6 148513744 148513982 -1003055 + ORR1E LTR MaLR 10 251 -108 2 1718 279 183 59 35 chr6 148514850 148514935 -1002102 + Lx8 LINE L1 7192 7278 -195 2 1718 207 0 0 0 chr6 148515152 148515175 -1001862 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1718 1158 66 0 0 chr6 148515176 148515313 -1001724 + B1_Mus1 SINE Alu 1 137 -11 2 1718 207 0 0 0 chr6 148515314 148515337 -1001700 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1718 375 260 85 19 chr6 148515449 148515545 -1001492 + PB1D9 SINE Alu 3 107 -13 2 1718 210 37 0 0 chr6 148515545 148515572 -1001465 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 2 1718 1009 270 46 99 chr6 148516065 148516120 -1000917 + B4A SINE B4 5 59 -233 3 1718 4379 50 6 0 chr6 148516120 148516624 -1000413 - L1Md_F2 LINE L1 -1 6581 6075 3 1718 1009 270 46 99 chr6 148516624 148516872 -1000165 + B4A SINE B4 60 292 0 3 1718 740 291 124 25 chr6 148517328 148517642 -999395 + MLT2C1 LTR ERVL 5 349 -48 3 1718 940 296 48 29 chr6 148517662 148517978 -999059 + MER2 DNA MER2_type 4 325 -20 3 1718 241 163 0 93 chr6 148518511 148518565 -998472 + B1_Mur1 SINE Alu 101 149 0 3 1718 198 0 0 0 chr6 148519140 148519162 -997875 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 3 1718 1353 227 128 72 chr6 148519252 148519714 -997323 + MT2A LTR ERVL 2 565 -36 3 1718 413 232 39 39 chr6 148519738 148519841 -997196 - B1F SINE Alu -30 119 17 3 1718 524 259 90 53 chr6 148519841 148520086 -996951 - L1MA7 LINE L1 -145 6146 5893 3 1718 567 371 73 19 chr6 148520163 148520531 -996506 + MamRep137 DNA TcMar? 15 402 -42 3 1718 188 315 49 86 chr6 148521289 148521452 -995585 - L2a LINE L2 -52 3374 3218 4 1718 246 306 89 34 chr6 148521486 148521665 -995372 + L1M5 LINE L1 5392 5580 -582 4 1718 277 304 245 43 chr6 148521708 148522427 -994610 - L2a LINE L2 -780 2639 1776 4 1718 356 323 77 18 chr6 148522482 148522652 -994385 - L2a LINE L2 -1814 1605 1426 4 1718 673 181 6 22 chr6 148522786 148522967 -994070 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 4 1718 278 353 95 26 chr6 148524123 148524312 -992725 + L2a LINE L2 2997 3198 -228 4 1718 216 0 0 0 chr6 148525105 148525129 -991908 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1718 298 205 98 98 chr6 148525350 148525442 -991595 + RMER5 LTR ERV1 21 112 -422 4 1718 266 218 87 19 chr6 148525849 148525952 -991085 + MLT2B2 LTR ERVL 1 110 -405 4 1718 755 274 46 42 chr6 148525952 148526169 -990868 + MTEa LTR MaLR 1 218 -161 4 1718 1720 206 35 6 chr6 148526179 148526521 -990516 + ORR1E LTR MaLR 4 355 -4 4 1718 1155 247 75 30 chr6 148526530 148526864 -990173 + MLT2B2 LTR ERVL 110 458 -57 4 1718 241 283 0 0 chr6 148526925 148526978 -990059 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1718 486 0 0 0 chr6 148527209 148527263 -989774 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1718 421 270 35 173 chr6 148527968 148528043 -988994 + B4A SINE B4 3 78 -214 5 1718 633 27 0 0 chr6 148528043 148528118 -988919 + (GA)n Simple_repeat Simple_repeat 1 75 0 5 1718 1049 221 55 0 chr6 148528128 148528327 -988710 + B3 SINE B2 1 210 -6 5 1718 421 270 35 173 chr6 148528327 148528437 -988600 + B4A SINE B4 81 172 -120 5 1718 405 0 0 0 chr6 148528810 148528855 -988182 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1718 189 0 0 0 chr6 148528886 148528907 -988130 + (GA)n Simple_repeat Simple_repeat 2 22 0 5 1718 24 32 0 0 chr6 148529135 148529166 -987871 + AT_rich Low_complexity Low_complexity 1 31 0 5 1718 201 261 161 25 chr6 148532449 148532567 -984470 - L2c LINE L2 -2 3385 3252 5 1718 1265 245 144 6 chr6 148532941 148533294 -983743 - MTD LTR MaLR 0 419 18 5 1718 293 238 25 0 chr6 148533849 148533929 -983108 + L1MA4 LINE L1 5588 5669 -634 5 1718 31 0 0 0 chr6 148533975 148534006 -983031 + AT_rich Low_complexity Low_complexity 1 31 0 6 1718 1041 153 102 0 chr6 148534006 148534182 -982855 + B3 SINE B2 3 196 -20 6 1718 2587 136 113 11 chr6 148534215 148534416 -982621 + RLTR11A LTR ERVK 13 224 -304 6 1718 486 0 0 0 chr6 148534416 148534470 -982567 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1718 561 68 0 0 chr6 148534472 148534546 -982491 + (GGA)n Simple_repeat Simple_repeat 3 76 0 6 1718 2587 136 113 11 chr6 148534546 148534809 -982228 + RLTR11A LTR ERVK 225 521 -7 6 1718 369 0 0 0 chr6 148534810 148534851 -982186 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 6 1718 903 267 96 8 chr6 148534867 148535309 -981728 + L1MA4 LINE L1 5789 6293 -7 5 1718 530 257 0 0 chr6 148536403 148536512 -980525 + PB1D7 SINE Alu 1 109 -11 6 1718 423 0 0 0 chr6 148537941 148537988 -979049 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1718 247 229 0 116 chr6 148538282 148538351 -978686 + ID4_ SINE ID 3 63 -20 6 1718 243 204 20 0 chr6 148538930 148538979 -978058 + ID_B1 SINE B4 175 224 0 6 1718 1229 200 9 0 chr6 148539232 148539442 -977595 - B3 SINE B2 -4 212 1 7 1718 2046 154 56 5 chr6 148539956 148540334 -976703 + MTC LTR MaLR 17 413 -8 7 1718 213 357 31 8 chr6 148541905 148542032 -975005 - MIR SINE MIR -56 206 77 7 1718 246 310 41 20 chr6 148542477 148542614 -974423 - MIR SINE MIR -62 146 16 7 1718 836 256 92 54 chr6 148542990 148543250 -973787 + MTEb LTR MaLR 106 375 -4 7 1718 470 180 18 91 chr6 148543379 148543489 -973548 + PB1D10 SINE Alu 1 102 -15 7 1718 492 153 0 0 chr6 148543489 148543574 -973463 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 7 1718 221 296 56 22 chr6 148544076 148544098 -972939 - ID_B1 SINE B4 -130 94 2 7 1718 235 266 29 59 chr6 148544098 148544166 -972871 - ID4_ SINE ID -16 67 2 7 1718 411 285 103 59 chr6 148544414 148544772 -972265 - L1ME1 LINE L1 -132 6047 5674 7 1718 211 53 24 73 chr6 148545088 148545129 -971908 + T-rich Low_complexity Low_complexity 2 40 0 8 1718 787 203 115 33 chr6 148545172 148545355 -971682 - B3A SINE B2 0 198 1 8 1718 348 256 25 25 chr6 148545403 148545483 -971554 + RCHARR1 DNA MER1_type 3 82 -892 8 1718 2242 102 11 114 chr6 148548301 148548757 -968280 + RMER17C LTR ERVK 2 410 0 8 1718 338 0 24 0 chr6 148548921 148548963 -968074 + (TAA)n Simple_repeat Simple_repeat 1 43 0 8 1718 199 319 95 42 chr6 148550021 148550116 -966921 + MIR SINE MIR 132 231 -31 8 1718 270 0 0 0 chr6 148550197 148550227 -966810 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1718 460 181 6 23 chr6 148550227 148550402 -966635 + (CA)n Simple_repeat Simple_repeat 1 172 0 8 1718 418 208 0 12 chr6 148550437 148550598 -966439 + (CA)n Simple_repeat Simple_repeat 2 160 0 8 1718 1134 248 83 16 chr6 148550912 148551166 -965871 + B4 SINE B4 17 287 -5 8 1718 250 374 6 81 chr6 148552737 148552897 -964140 + Charlie2b DNA MER1_type 175 322 -2460 8 1718 615 120 48 6 chr6 148553139 148553307 -963730 + (TG)n Simple_repeat Simple_repeat 1 175 0 9 1718 937 88 35 11 chr6 148553362 148553720 -963317 + (TG)n Simple_repeat Simple_repeat 1 366 0 9 1718 769 251 39 22 chr6 148553859 148554038 -962999 + B3A SINE B2 2 183 -15 9 1718 306 347 65 82 chr6 148554135 148554245 -962792 - MIR SINE MIR -147 121 15 9 1718 237 305 0 63 chr6 148554395 148554458 -962579 + AluF_3 SINE Alu 140 198 -113 9 1718 544 250 63 122 chr6 148554452 148554531 -962506 + MLT1A LTR MaLR 139 195 -179 9 1718 324 0 0 0 chr6 148554531 148554567 -962470 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1718 544 253 69 115 chr6 148554567 148554741 -962296 + MLT1A LTR MaLR 196 408 0 9 1718 1085 252 32 28 chr6 148554972 148555254 -961783 + B4 SINE B4 2 284 -8 9 1718 25 31 0 0 chr6 148555319 148555351 -961686 + AT_rich Low_complexity Low_complexity 1 32 0 9 1718 958 228 224 0 chr6 148555736 148555968 -961069 - B4 SINE B4 -4 288 5 9 1718 655 256 109 128 chr6 148555996 148556309 -960728 - MLT1B LTR MaLR -3 387 81 9 1718 271 171 0 26 chr6 148556400 148556478 -960559 + GA-rich Low_complexity Low_complexity 3 78 0 1 1718 269 157 39 0 chr6 148556543 148556594 -960443 + Lx8 LINE L1 7410 7462 -11 1 1718 3217 53 5 8 chr6 148556617 148557014 -960023 + MTA_Mm LTR MaLR 1 396 0 1 1718 222 240 0 0 chr6 148557885 148557935 -959102 + A-rich Low_complexity Low_complexity 1 50 0 1 1718 266 0 0 29 chr6 148557970 148558005 -959032 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 1 1718 339 44 0 0 chr6 148558661 148558706 -958331 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1718 342 0 0 0 chr6 148558706 148558743 -958294 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1718 229 161 48 0 chr6 148558848 148558910 -958127 + GA-rich Low_complexity Low_complexity 4 68 0 1 1718 183 156 0 0 chr6 148559031 148559063 -957974 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1718 306 0 0 0 chr6 148559496 148559530 -957507 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1718 316 314 45 34 chr6 148559586 148559764 -957273 + L1M5 LINE L1 5317 5496 -744 1 1718 2177 138 3 0 chr6 148559862 148560188 -956849 - ORR1A2 LTR MaLR 0 327 1 1 1718 270 299 0 15 chr6 148560801 148560869 -956168 - ID4 SINE ID 0 83 17 1 1718 575 276 32 13 chr6 148560904 148561062 -955975 + B3A SINE B2 2 162 -36 1 1718 31 0 0 0 chr6 148561083 148561114 -955923 + AT_rich Low_complexity Low_complexity 1 31 0 1 1718 345 50 16 32 chr6 148561845 148561907 -955130 + (TTTC)n Simple_repeat Simple_repeat 1 61 0 1 1718 1187 57 0 0 chr6 148562133 148562274 -954763 + B1_Mm SINE Alu 1 141 -6 1 1718 329 0 24 0 chr6 148562275 148562316 -954721 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1 1718 2427 123 61 92 chr6 148562645 148563121 -953916 + RMER6B LTR ERVK 1 461 0 1 1718 189 0 0 0 chr6 148564071 148564092 -952945 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1718 33 25 0 0 chr6 148565128 148565168 -951869 + AT_rich Low_complexity Low_complexity 1 40 0 1 1718 384 22 0 0 chr6 148565315 148565360 -951677 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1718 522 250 0 46 chr6 148566523 148566645 -950392 - MTEa LTR MaLR 0 379 264 1 1718 833 255 67 38 chr6 148566645 148566963 -950074 + ORR1D2 LTR MaLR 1 329 -30 1 1718 372 231 32 21 chr6 148566941 148567034 -950003 - B3A SINE B2 -5 193 100 1 1718 291 140 0 0 chr6 148567379 148567429 -949608 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1718 396 286 0 0 chr6 148569248 148569346 -947691 + PB1D10 SINE Alu 6 103 -14 1 1718 335 280 34 8 chr6 148569474 148569593 -947444 - MIR SINE MIR -59 203 82 1 1718 302 0 26 0 chr6 148570640 148570678 -946359 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1718 226 300 95 53 chr6 148570863 148571032 -946005 - ORR1E LTR MaLR -105 254 79 1 1718 646 253 40 17 chr6 148571464 148571641 -945396 + B3A SINE B2 2 182 -16 1 1718 358 323 39 0 chr6 148571698 148571828 -945209 + MER82 DNA MER2_type 8 142 -511 1 1718 234 81 0 0 chr6 148572569 148572606 -944431 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1718 357 271 28 18 chr6 148572661 148572770 -944267 + PB1D10 SINE Alu 6 115 -2 1 1718 1100 223 123 37 chr6 148573946 148574295 -942742 - MTEa LTR MaLR 0 379 1 1 1718 362 325 17 0 chr6 148574443 148574560 -942477 + PB1D7 SINE Alu 1 119 -1 1 1718 241 253 141 11 chr6 148574627 148574719 -942318 + MLT1F LTR MaLR 56 159 -389 1 1718 183 80 0 0 chr6 148574927 148574952 -942085 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1718 990 249 150 6 chr6 148575618 148575945 -941092 - MTEb LTR MaLR -5 374 1 1 1718 442 152 0 0 chr6 148577863 148577942 -939095 + B1_Mur3 SINE Alu 70 148 -1 1 1718 800 235 47 43 chr6 148578830 148579084 -937953 + RLTR11A2 LTR ERVK 1 255 -272 1 1718 345 209 18 62 chr6 148579223 148579335 -937702 + RLTR11A2 LTR ERVK 284 390 -63 1 1718 571 274 20 20 chr6 148580208 148580357 -936680 + RSINE1 SINE B4 2 150 -15 1 1718 213 39 0 0 chr6 148580929 148580955 -936082 + (CAGAGA)n Simple_repeat Simple_repeat 2 27 0 1 1718 4962 16 27 0 chr6 148581405 148581967 -935070 - L1Md_F3 LINE L1 -3 6581 6005 1 1718 327 319 58 16 chr6 148581979 148582170 -934867 - MIR SINE MIR -62 200 2 1 1718 749 67 24 58 chr6 148583080 148583287 -933750 + (TAGA)n Simple_repeat Simple_repeat 1 199 0 1 1718 2000 123 154 80 chr6 148583545 148584091 -932946 - RLTR6_Mm LTR ERV1 -68 586 1 1 1718 24402 35 25 19 chr6 148584091 148587056 -929981 - MMVL30-int LTR ERV1 0 3698 716 1 1718 420 294 0 59 chr6 148587349 148587501 -929536 - MMVL30-int LTR ERV1 -7023 533 391 1 1718 6649 25 46 17 chr6 148587495 148588301 -928736 - RLTR6-int LTR ERV1 -6949 829 1 1 1718 2577 115 149 78 chr6 148588302 148588866 -928171 - RLTR6_Mm LTR ERV1 -50 604 1 1 1718 600 220 33 72 chr6 148589539 148589691 -927346 + B1_Mur3 SINE Alu 4 149 0 1 1718 355 265 42 42 chr6 148590273 148590450 -926587 + B4A SINE B4 3 227 -65 1 1718 868 265 23 28 chr6 148590453 148590670 -926367 + B3 SINE B2 1 216 0 1 1718 486 46 0 0 chr6 148590741 148590806 -926231 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1718 621 0 121 0 chr6 148590896 148591045 -925992 + (TC)n Simple_repeat Simple_repeat 2 168 0 1 1718 1357 204 60 83 chr6 148591466 148591936 -925101 + RMER6B LTR ERVK 3 461 0 1 1718 254 260 80 80 chr6 148591940 148592078 -924959 + Lx6 LINE L1 247 384 -7344 1 1718 9183 198 93 70 chr6 148592169 148592682 -924355 + Lx6 LINE L1 892 1367 -4510 1 1718 798 140 118 25 chr6 148592682 148592843 -924194 + B2_Mm2 SINE B2 2 177 -18 1 1718 9183 168 265 21 chr6 148592843 148592860 -924177 + Lx6 LINE L1 1368 1374 -4503 1 1718 180 0 0 0 chr6 148592860 148592880 -924157 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 1718 9183 168 265 21 chr6 148592880 148594142 -922895 + Lx6 LINE L1 1375 2692 -3185 1 1718 3419 68 12 135 chr6 148594142 148594704 -922333 + MT2_Mm LTR ERVL 1 493 0 1 1718 9183 168 265 21 chr6 148594704 148595673 -921364 + Lx6 LINE L1 2693 4207 -1670 1 1718 2556 186 12 9 chr6 148595668 148596238 -920799 + Lx6 LINE L1 5492 6065 -1395 1 1718 1402 108 68 0 chr6 148596239 148596461 -920576 + ORR1A2 LTR MaLR 1 237 -90 1 1718 1836 106 3 65 chr6 148596453 148596776 -920261 - ORR1A2 LTR MaLR -22 305 3 1 1718 1380 211 14 28 chr6 148596782 148597070 -919967 + Lx6 LINE L1 7151 7434 -26 1 1718 1168 55 0 14 chr6 148597551 148597688 -919349 + B1_Mus2 SINE Alu 1 137 -10 1 1718 221 0 0 33 chr6 148597688 148597718 -919319 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1718 207 69 0 0 chr6 148597747 148597776 -919261 + (TTA)n Simple_repeat Simple_repeat 3 31 0 1 1718 372 305 17 0 chr6 148597866 148597984 -919053 + MIR SINE MIR 42 161 -101 1 1718 488 173 232 7 chr6 148598502 148598657 -918380 - MTE2b LTR MaLR 0 379 190 1 1718 467 206 98 78 chr6 148598709 148598914 -918123 - Tigger7 DNA MER2_type -3 2488 2280 1 1718 423 0 0 0 chr6 148599183 148599230 -917807 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1718 441 0 0 0 chr6 148599230 148599278 -917759 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1718 198 118 0 0 chr6 148600851 148600885 -916152 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 1 1718 1442 222 22 13 chr6 148602051 148602365 -914672 - MTD LTR MaLR 0 419 103 1 1718 260 338 40 40 chr6 148602386 148602534 -914503 + ERVL-E-int LTR ERVL 59 206 -4790 1 1718 1698 217 55 8 chr6 148602570 148602932 -914105 - MTEa LTR MaLR 0 379 1 1 1718 269 360 40 20 chr6 148603742 148603892 -913145 + ERVL-E-int LTR ERVL 1333 1485 -4182 1 1718 1137 75 0 0 chr6 148604166 148604313 -912724 + B1_Mus1 SINE Alu 2 148 0 1 1718 673 43 0 21 chr6 148604477 148604572 -912465 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 1 1718 3636 133 23 44 chr6 148604775 148605389 -911648 - MT2B LTR ERVL 0 601 1 1 1718 254 346 37 22 chr6 148605389 148605525 -911512 + ERVL-E-int LTR ERVL 2009 2146 -2850 1 1718 993 53 83 0 chr6 148605525 148605658 -911379 + B1_Mus1 SINE Alu 2 145 -3 1 1718 887 244 78 81 chr6 148605681 148605887 -911150 - ORR1E LTR MaLR -6 353 145 1 1718 423 0 0 0 chr6 148605887 148605934 -911103 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1718 887 244 78 81 chr6 148605934 148606061 -910976 - ORR1E LTR MaLR -215 144 21 1 1718 201 262 30 15 chr6 148606919 148606985 -910052 + (CCCCAG)n Simple_repeat Simple_repeat 5 71 0 1 1718 286 301 43 11 chr6 148607102 148607196 -909841 + B1F1 SINE Alu 17 113 -36 1 1718 620 59 12 0 chr6 148607273 148607358 -909679 + (TCCC)n Simple_repeat Simple_repeat 3 88 0 1 1718 277 225 18 0 chr6 148607380 148607447 -909590 - B1F2 SINE Alu -44 73 6 1 1718 252 228 81 0 chr6 148607487 148607557 -909480 + B1F1 SINE Alu 17 92 -57 1 1718 1246 139 36 40 chr6 148607588 148607813 -909224 - URR1B DNA MER1_type 0 225 2 1 1718 207 0 0 0 chr6 148607845 148607868 -909169 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1718 2443 130 177 57 chr6 148607901 148608414 -908623 + RMER15 LTR ERVL 1 575 0 1 1718 462 358 62 75 chr6 148608936 148609297 -907740 - MLT1H LTR MaLR -15 534 178 1 1718 300 270 0 0 chr6 148609297 148609371 -907666 - ID4_ SINE ID -9 74 1 1 1718 462 358 62 75 chr6 148609371 148609492 -907545 - MLT1H LTR MaLR -372 177 58 1 1718 348 274 12 0 chr6 148609743 148609827 -907210 + PB1D7 SINE Alu 28 112 -8 1 1718 1901 172 36 22 chr6 148610099 148610461 -906576 - ORR1B2 LTR MaLR 0 367 1 1 1718 250 391 101 31 chr6 148610826 148611182 -905855 + MLT1C LTR MaLR 21 401 -66 1 1718 3294 24 37 0 chr6 148611508 148611890 -905147 - MTA_Mm LTR MaLR 0 396 1 1 1718 9448 25 2 2 chr6 148611890 148612988 -904049 - MTA_Mm-int LTR MaLR 0 1098 1 1 1718 3336 24 34 0 chr6 148612988 148613371 -903666 - MTA_Mm LTR MaLR 0 396 1 1 1718 339 254 218 37 chr6 148614157 148614189 -902848 - Charlie2a DNA MER1_type -284 2577 2542 1 1718 2816 108 31 35 chr6 148614189 148614612 -902425 + MTC LTR MaLR 1 421 0 1 1718 339 254 218 37 chr6 148614612 148614877 -902160 - Charlie2a DNA MER1_type -320 2541 2227 1 1718 513 278 252 10 chr6 148614879 148615047 -901990 - MLT1A0 LTR MaLR 0 365 134 1 1718 789 237 73 5 chr6 148615047 148615238 -901799 - B3 SINE B2 -10 206 3 1 1718 513 278 252 10 chr6 148615238 148615363 -901674 - MLT1A0 LTR MaLR -232 133 2 1 1718 330 256 66 52 chr6 148615953 148616089 -900948 - Charlie2a DNA MER1_type -1204 1657 1520 1 1718 244 308 0 0 chr6 148616098 148616163 -900874 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 1 1718 405 0 0 0 chr6 148616171 148616216 -900821 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1718 363 225 0 0 chr6 148616221 148616292 -900745 - ID4 SINE ID -11 72 2 1 1718 484 230 95 0 chr6 148616300 148616426 -900611 - B1F SINE Alu -1 148 11 2 1718 414 247 188 12 chr6 148617607 148617767 -899270 - RMER15 LTR ERVL -44 531 344 2 1718 231 204 33 31 chr6 148618312 148618389 -898648 - B1F SINE Alu -2 147 45 2 1718 41 0 0 0 chr6 148619376 148619417 -897620 + AT_rich Low_complexity Low_complexity 1 41 0 2 1718 1136 205 93 30 chr6 148619514 148619816 -897221 - MTE2a LTR MaLR 0 379 59 2 1718 488 212 0 0 chr6 148620221 148620306 -896731 + B4 SINE B4 1 85 -207 2 1718 1016 117 126 0 chr6 148620309 148620515 -896522 + Lx9 LINE L1 7412 7643 -1 2 1718 397 146 28 28 chr6 148620556 148620662 -896375 + GA-rich Low_complexity Low_complexity 2 107 0 2 1718 485 252 33 33 chr6 148620669 148620814 -896223 + B4 SINE B4 81 225 -67 2 1718 385 380 12 65 chr6 148620814 148620983 -896054 + RSINE1 SINE B4 3 162 -3 2 1718 249 139 0 0 chr6 148621001 148621044 -895993 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2 1718 207 306 0 0 chr6 148621101 148621163 -895874 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1718 238 319 42 17 chr6 148621169 148621287 -895750 - MLT1D LTR MaLR -338 167 47 2 1718 2353 79 38 12 chr6 148621566 148621885 -895152 + ORR1A2 LTR MaLR 1 327 0 2 1718 358 305 0 67 chr6 148622099 148622264 -894773 + CT-rich Low_complexity Low_complexity 3 156 0 2 1718 475 232 134 0 chr6 148622332 148622444 -894593 + B1F SINE Alu 17 143 -6 2 1718 268 313 74 7 chr6 148622333 148622468 -894569 + B4A SINE B4 103 246 -46 2 1718 223 294 0 0 chr6 148622468 148622519 -894518 + polypurine Low_complexity Low_complexity 1 51 0 2 1718 230 242 14 57 chr6 148622991 148623061 -893976 + MIRc SINE MIR 9 75 -193 2 1718 958 283 34 24 chr6 148623156 148623453 -893584 - Lx5 LINE L1 0 7050 6751 2 1718 1569 139 81 0 chr6 148623451 148623710 -893327 + L1_Mur2 LINE L1 5541 5820 -57 2 1718 452 254 26 0 chr6 148623711 148623825 -893212 - PB1D10 SINE Alu 0 117 1 2 1718 240 152 50 17 chr6 148623959 148624019 -893018 + GA-rich Low_complexity Low_complexity 4 65 0 2 1718 215 175 18 0 chr6 148625537 148625594 -891443 + GA-rich Low_complexity Low_complexity 3 60 0 2 1718 525 219 176 14 chr6 148626313 148626461 -890576 - MTEb LTR MaLR -2 377 206 2 1718 1404 89 16 0 chr6 148626706 148626896 -890141 - B2_Mm2 SINE B2 -2 193 1 2 1718 387 0 0 0 chr6 148627809 148627852 -889185 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1718 370 239 8 0 chr6 148628010 148628133 -888904 + ID4 SINE ID 22 146 -6 2 1718 207 0 0 0 chr6 148628230 148628253 -888784 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1718 681 246 164 57 chr6 148628491 148628754 -888283 + B4A SINE B4 2 292 0 2 1718 368 132 29 0 chr6 148628761 148628829 -888208 + GA-rich Low_complexity Low_complexity 4 73 0 2 1718 592 179 149 103 chr6 148629200 148629374 -887663 + B3A SINE B2 1 182 -16 2 1718 285 262 29 144 chr6 148629569 148629601 -887436 + YREP_Mm Unknown Unknown 171 284 -1528 2 1718 571 278 15 0 chr6 148629601 148629734 -887303 - ID_B1 SINE B4 -11 213 79 2 1718 1280 238 120 27 chr6 148630137 148630513 -886524 + MTD LTR MaLR 5 415 -4 2 1718 2735 202 84 75 chr6 148631053 148631947 -885090 - RMER19B LTR ERVK 0 902 1 2 1718 433 206 0 0 chr6 148631947 148632036 -885001 - B1F1 SINE Alu -26 123 35 2 1718 305 333 0 0 chr6 148632343 148632418 -884619 - ID4 SINE ID -7 76 2 2 1718 558 280 8 0 chr6 148634032 148634164 -882873 - ID_B1 SINE B4 -11 213 81 2 1718 1416 37 0 0 chr6 148634171 148634335 -882702 + L1Md_F2 LINE L1 5423 5586 -297 2 1718 8330 43 2 0 chr6 148634335 148635328 -881709 + L1Md_F2 LINE L1 5587 6581 -1 2 214 4291 60 2 4 chr6 148635347 148635882 -881155 + L1Md_F3 LINE L1 6038 6571 -13 2 1719 27 29 0 0 chr6 148636028 148636062 -880975 + AT_rich Low_complexity Low_complexity 1 34 0 2 1719 237 128 0 0 chr6 148636568 148636615 -880422 + (C)n Simple_repeat Simple_repeat 1 47 0 2 1719 225 288 82 59 chr6 148636689 148636859 -880178 + Charlie2a DNA MER1_type 79 252 -2609 2 1719 225 0 0 0 chr6 148637016 148637041 -879996 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1719 597 233 0 15 chr6 148637045 148637176 -879861 + ID_B1 SINE B4 90 218 -6 2 1719 520 295 173 20 chr6 148637199 148637448 -879589 + B4A SINE B4 2 288 -4 2 1719 297 0 0 0 chr6 148637454 148637487 -879550 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1719 238 280 123 75 chr6 148637580 148637955 -879082 + Charlie2a DNA MER1_type 1482 1874 -987 2 1719 370 323 62 82 chr6 148637969 148638273 -878764 - ORR1E LTR MaLR -10 349 52 2 1719 563 261 46 61 chr6 148638316 148638512 -878525 + B3A SINE B2 2 194 -4 2 1719 501 17 0 0 chr6 148638517 148638575 -878462 + (GGAA)n Simple_repeat Simple_repeat 2 59 0 2 1719 389 206 170 30 chr6 148638593 148638728 -878309 + Charlie2a DNA MER1_type 1884 2037 -824 2 1719 408 252 108 47 chr6 148638892 148639171 -877866 + Charlie2a DNA MER1_type 2305 2600 -261 2 1719 596 253 126 112 chr6 148639196 148639481 -877556 + B4A SINE B4 4 292 0 2 1719 342 299 0 0 chr6 148639481 148639638 -877399 + (CA)n Simple_repeat Simple_repeat 1 157 0 2 1719 809 238 0 6 chr6 148639655 148639820 -877217 + B3A SINE B2 2 165 -33 2 1719 426 39 0 0 chr6 148639820 148639872 -877165 + (CATA)n Simple_repeat Simple_repeat 4 55 0 2 1719 474 270 52 78 chr6 148639872 148639899 -877138 + B2_Mm2 SINE B2 160 189 -6 2 1719 302 291 103 11 chr6 148639941 148640115 -876922 + Charlie2a DNA MER1_type 2618 2807 -54 2 1719 255 79 0 0 chr6 148640303 148640341 -876696 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1719 234 348 34 62 chr6 148640755 148641064 -875973 + RSINE1 SINE B4 4 281 -11 2 1719 224 30 30 0 chr6 148641071 148641104 -875933 + (CAAT)n Simple_repeat Simple_repeat 1 34 0 2 1719 180 0 0 0 chr6 148641403 148641423 -875614 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1719 249 343 71 0 chr6 148642446 148642545 -874492 - L2b LINE L2 -33 3342 3237 2 1719 665 253 45 17 chr6 148642764 148642941 -874096 + B3A SINE B2 2 183 -15 2 1719 243 0 0 0 chr6 148642956 148642983 -874054 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1719 34 0 0 0 chr6 148642989 148643023 -874014 + AT_rich Low_complexity Low_complexity 1 34 0 2 1719 7399 126 6 6 chr6 148643024 148644242 -872795 - Lx LINE L1 -724 5930 4713 2 1719 2045 101 17 20 chr6 148644242 148644544 -872493 + Lx LINE L1 6354 6654 0 2 1719 875 209 190 0 chr6 148644553 148644764 -872273 + Lx8 LINE L1 7076 7326 -147 2 1719 189 0 0 0 chr6 148644764 148644785 -872252 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1719 210 37 0 0 chr6 148644785 148644811 -872226 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1719 265 177 0 37 chr6 148644818 148644900 -872137 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 2 1719 321 161 0 0 chr6 148644903 148644990 -872047 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 1719 26 30 0 0 chr6 148645074 148645107 -871930 + AT_rich Low_complexity Low_complexity 1 33 0 2 1719 914 86 257 0 chr6 148645107 148645247 -871790 - B2_Mm2 SINE B2 -19 176 1 2 1719 369 365 50 40 chr6 148645496 148645848 -871189 + MLT1G LTR MaLR 13 371 -220 2 1719 233 323 75 0 chr6 148645947 148646080 -870957 + MLT1G LTR MaLR 431 573 -18 2 1719 390 21 0 0 chr6 148646140 148646187 -870850 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1719 394 224 35 0 chr6 148646495 148646580 -870457 - PB1D10 SINE Alu -20 97 10 2 1719 1341 74 11 0 chr6 148646633 148646809 -870228 + B2_Mm1t SINE B2 2 179 -14 2 1719 186 43 0 0 chr6 148647043 148647066 -869971 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1719 197 197 0 16 chr6 148647560 148647622 -869415 + CT-rich Low_complexity Low_complexity 2 62 0 2 1719 661 186 0 2 chr6 148648268 148648397 -868640 + B1_Mur1 SINE Alu 5 132 -17 2 1719 234 133 180 16 chr6 148648413 148648474 -868563 - ORR1D1 LTR MaLR -34 340 270 2 1719 7691 71 14 0 chr6 148648566 148649645 -867392 - L1_Mus2 LINE L1 0 6566 5467 2 1719 864 143 0 26 chr6 148649645 148649796 -867241 - ORR1D1 LTR MaLR -227 147 1 2 1719 525 279 7 7 chr6 148649859 148649996 -867041 + B4A SINE B4 142 278 -14 2 1719 566 258 4 0 chr6 148650155 148650419 -866618 + (TG)n Simple_repeat Simple_repeat 1 265 0 2 1719 189 322 42 62 chr6 148651093 148651189 -865848 - L2a LINE L2 0 3426 3333 2 1719 656 164 0 0 chr6 148651520 148651630 -865407 + RSINE1 SINE B4 27 136 -29 2 1719 3522 67 0 9 chr6 148651749 148652201 -864836 + L1Md_F2 LINE L1 6135 6582 0 2 1719 7681 89 23 11 chr6 148652554 148654074 -862963 - L1_Mus3 LINE L1 -1 6637 5114 2 1719 1269 20 7 0 chr6 148654074 148654220 -862817 - B1_Mm SINE Alu 0 147 1 2 1719 6069 115 11 27 chr6 148654220 148654365 -862672 - L1_Mus3 LINE L1 -770 5113 4969 2 1719 936 259 175 16 chr6 148654365 148654679 -862358 + ORR1E LTR MaLR 9 372 -7 2 1719 351 183 0 78 chr6 148654781 148655170 -861867 + (TG)n Simple_repeat Simple_repeat 1 358 0 2 1719 609 213 154 43 chr6 148655172 148655334 -861703 - B3A SINE B2 -16 182 3 2 1719 806 220 93 0 chr6 148656448 148656630 -860407 - B3 SINE B2 -17 199 1 2 1719 196 366 38 38 chr6 148656739 148656844 -860193 + MIRc SINE MIR 2 106 -162 2 1719 369 298 107 6 chr6 148657012 148657171 -859866 + MTEb LTR MaLR 203 377 -2 2 1719 301 261 43 43 chr6 148658141 148658233 -858804 - PB1D10 SINE Alu -13 104 13 2 1719 587 237 81 7 chr6 148658334 148658470 -858567 - B1F SINE Alu 0 149 4 2 1719 224 330 65 9 chr6 148658539 148658646 -858391 - L2a LINE L2 -1 3425 3313 2 1719 207 0 0 0 chr6 148658951 148658974 -858063 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1719 287 339 48 8 chr6 148659692 148659817 -857220 - MLT1G LTR MaLR -450 141 12 2 1719 253 293 170 67 chr6 148661254 148661320 -855717 + Charlie1a DNA MER1_type 2 59 -1396 2 1719 401 288 96 117 chr6 148661320 148661705 -855332 - MTEa LTR MaLR -2 377 1 3 1719 253 293 170 67 chr6 148661705 148661861 -855176 + Charlie1a DNA MER1_type 60 247 -1208 2 1719 334 195 78 0 chr6 148662111 148662188 -854849 - B1_Mur1 SINE Alu -7 142 60 3 1719 787 312 97 2 chr6 148662176 148662590 -854447 + Charlie1a DNA MER1_type 547 999 -456 2 1719 180 77 0 0 chr6 148662593 148662619 -854418 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1719 624 286 14 7 chr6 148663278 148663426 -853611 + RSINE1 SINE B4 13 161 -4 3 1719 255 61 0 0 chr6 148663442 148663475 -853562 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1719 292 309 3 7 chr6 148664120 148664412 -852625 + C-rich Low_complexity Low_complexity 1 290 0 3 1719 186 43 0 0 chr6 148664740 148664763 -852274 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1719 726 248 54 5 chr6 148664955 148665158 -851879 - ID_B1 SINE B4 -10 214 2 3 1719 202 191 0 60 chr6 148666074 148666124 -850913 + GA-rich Low_complexity Low_complexity 3 49 0 3 1719 514 279 0 0 chr6 148667018 148667129 -849908 - PB1D7 SINE Alu -2 118 8 3 1719 878 214 64 15 chr6 148667228 148667432 -849605 - B3 SINE B2 0 216 3 3 1719 355 323 60 95 chr6 148667977 148668346 -848691 - L1MEc LINE L1 -5574 826 471 3 1719 324 0 0 0 chr6 148668346 148668382 -848655 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1719 819 182 0 57 chr6 148668984 148669141 -847896 - B1_Mus1 SINE Alu 0 148 1 3 1719 3359 85 0 2 chr6 148669410 148669857 -847180 + L1_Mus4 LINE L1 6191 6636 0 3 1719 308 221 15 0 chr6 148669859 148669927 -847110 + L1_Mur3 LINE L1 4241 4309 -1571 3 1719 313 140 0 0 chr6 148669965 148670015 -847022 - RLTR21 LTR ERVK -1522 50 1 3 1719 2150 155 55 36 chr6 148670044 148670155 -846882 - RMER1B Other Other -1 1065 940 3 1719 261 0 0 0 chr6 148670155 148670184 -846853 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1719 2150 155 55 36 chr6 148670184 148670488 -846549 - RMER1B Other Other -127 939 643 3 1719 227 184 0 0 chr6 148670507 148670556 -846481 + C-rich Low_complexity Low_complexity 3 51 0 3 1719 870 112 110 68 chr6 148670556 148670719 -846318 + RMER1B Other Other 500 669 -397 3 1719 341 330 108 21 chr6 148670998 148671184 -845853 - L2a LINE L2 -291 3135 2934 3 1719 727 70 46 17 chr6 148671184 148671358 -845679 + (GA)n Simple_repeat Simple_repeat 2 180 0 3 1719 603 95 61 12 chr6 148671364 148671613 -845424 + GA-rich Low_complexity Low_complexity 1 261 0 3 1719 688 106 5 53 chr6 148671642 148671831 -845206 + GA-rich Low_complexity Low_complexity 1 180 0 3 1719 335 187 22 0 chr6 148671886 148671977 -845060 + (TATG)n Simple_repeat Simple_repeat 2 94 0 3 1719 545 212 6 0 chr6 148672034 148672213 -844824 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1719 905 150 7 13 chr6 148672450 148672599 -844438 + B1_Mur3 SINE Alu 1 148 -1 3 1719 463 311 191 7 chr6 148673898 148674186 -842851 - MLT1E1A LTR MaLR -2 678 338 3 1719 245 352 9 53 chr6 148674277 148674391 -842646 - MLT1E1A LTR MaLR -451 109 1 3 1719 1118 260 43 90 chr6 148675233 148675656 -841381 + MTD LTR MaLR 1 403 -16 3 1719 380 244 26 36 chr6 148676204 148676318 -840719 + PB1D7 SINE Alu 1 120 -7 3 1719 564 239 29 63 chr6 148677014 148677188 -839849 - MTE2a LTR MaLR -2 377 210 3 1719 8072 7 0 0 chr6 148678285 148679173 -837864 + L1Md_A LINE L1 4699 5586 -297 3 1719 9211 2 0 0 chr6 148679173 148680169 -836868 + L1Md_A LINE L1 5587 6582 0 3 1719 1057 199 181 57 chr6 148681413 148681744 -835293 - MTC LTR MaLR -47 372 1 3 1719 2323 198 50 110 chr6 148681744 148681874 -835163 - MTC-int LTR MaLR 0 1258 1125 3 1719 704 186 13 33 chr6 148681874 148682024 -835013 - B1_Mur3 SINE Alu -2 147 1 3 1719 2323 198 50 110 chr6 148682024 148682619 -834418 - MTC-int LTR MaLR -134 1124 577 3 1719 340 254 92 56 chr6 148682630 148682908 -834129 - RMER13B LTR ERVK -32 926 627 3 1719 1148 224 120 116 chr6 148682926 148683448 -833589 - MTC-int LTR MaLR -732 526 1 3 1719 1596 217 97 25 chr6 148683448 148683841 -833196 - MTC LTR MaLR 0 421 1 3 1719 595 284 27 7 chr6 148683938 148684082 -832955 - B4A SINE B4 -43 249 103 3 1719 1499 165 88 21 chr6 148684082 148684401 -832636 + RLTR20B3 LTR ERVK 1 343 -234 3 1719 1243 41 0 0 chr6 148684401 148684548 -832489 + B1_Mus2 SINE Alu 1 147 0 3 1719 509 192 19 9 chr6 148684587 148684692 -832345 + RLTR20B3 LTR ERVK 472 577 0 3 1719 256 208 91 0 chr6 148684742 148684819 -832218 - B4A SINE B4 -206 86 3 3 1719 432 292 32 129 chr6 148684913 148685223 -831814 - ORR1E LTR MaLR 0 359 80 3 1719 245 194 0 53 chr6 148685471 148685547 -831490 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 3 1719 822 212 58 10 chr6 148685643 148685848 -831189 + B3 SINE B2 2 216 0 3 1719 352 227 62 26 chr6 148686784 148686897 -830140 + LTR82A LTR ERVL 571 687 -185 3 1719 432 276 23 16 chr6 148686822 148686951 -830086 + LTR82B Low_complexity ERVL 576 705 -125 3 1719 996 117 0 0 chr6 148687278 148687500 -829537 + (TG)n Simple_repeat Simple_repeat 1 222 0 3 1719 573 237 0 0 chr6 148687733 148687847 -829190 + B3A SINE B2 1 114 -84 3 1719 1008 199 102 0 chr6 148687908 148688104 -828933 - B3 SINE B2 0 216 1 3 1719 192 77 0 0 chr6 148688415 148688441 -828596 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1719 620 235 168 0 chr6 148688443 148688622 -828415 - ID_B1 SINE B4 -15 209 1 3 1719 1109 233 125 10 chr6 148689763 148690067 -826970 - MTD LTR MaLR 0 419 81 3 1719 614 200 17 0 chr6 148690738 148690853 -826184 - B3A SINE B2 -80 118 2 3 1719 276 222 70 10 chr6 148691277 148691377 -825660 + MLT1A1 LTR MaLR 291 396 -12 3 1719 236 301 87 17 chr6 148691688 148691803 -825234 + B3A SINE B2 74 196 -2 3 1719 494 279 72 27 chr6 148692228 148692449 -824588 + Charlie18a DNA MER1_type 34 264 -78 3 1719 529 253 6 6 chr6 148692509 148692688 -824349 + CT-rich Low_complexity Low_complexity 2 180 0 3 1719 204 222 0 0 chr6 148692691 148692727 -824310 + polypyrimidine Low_complexity Low_complexity 3 38 0 3 1719 290 269 28 46 chr6 148692729 148692838 -824199 - PB1D10 SINE Alu -6 111 5 3 1719 189 289 182 13 chr6 148693572 148693726 -823311 - MIRc SINE MIR -75 193 14 3 1719 1069 256 116 13 chr6 148693812 148694192 -822845 - L1MB3 LINE L1 -284 5899 5481 3 1719 940 293 84 20 chr6 148694257 148694710 -822327 - L1MB8 LINE L1 -7 6171 5690 3 1719 215 135 0 71 chr6 148695076 148695132 -821905 + (TTGG)n Simple_repeat Simple_repeat 2 53 0 3 1719 791 257 196 25 chr6 148695904 148696307 -820730 - RLTR40 LTR ERVK -10 807 336 3 1719 814 298 150 2 chr6 148696343 148696737 -820300 - L1MB7 LINE L1 -172 6012 5561 3 1719 837 323 28 32 chr6 148696940 148697446 -819591 - L1MB7 LINE L1 -1050 5394 4892 3 1719 313 227 30 0 chr6 148697446 148697512 -819525 + RSINE1 SINE B4 3 70 -95 3 1719 180 0 0 0 chr6 148697577 148697597 -819440 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1719 520 293 17 2 chr6 148697600 148697789 -819248 - L1MB7 LINE L1 -1888 4258 4066 3 1719 812 298 91 0 chr6 148697800 148698052 -818985 - MLT1A0 LTR MaLR 0 365 91 3 1719 857 191 84 11 chr6 148698254 148698444 -818593 + B3 SINE B2 6 209 -7 3 1719 382 289 100 69 chr6 148698479 148698739 -818298 - Lx8 LINE L1 -16 7457 7190 3 1719 416 224 61 104 chr6 148699547 148699711 -817326 + RSINE1 SINE B4 2 158 -7 3 1719 597 257 26 72 chr6 148700257 148700450 -816587 + B4 SINE B4 109 292 0 3 1719 512 241 104 8 chr6 148700765 148700899 -816138 + B1_Mur2 SINE Alu 3 149 0 3 1719 1051 222 14 0 chr6 148700932 148701144 -815893 + B3 SINE B2 2 216 0 3 1719 426 345 45 58 chr6 148701266 148701577 -815460 - RLTR25B LTR ERVK -716 312 6 3 1719 813 68 10 0 chr6 148701712 148701815 -815222 + L1_Mur1 LINE L1 5439 5542 -344 3 1719 248 50 100 0 chr6 148701815 148701855 -815182 + ORR1C1 LTR MaLR 335 378 0 3 1719 461 271 14 43 chr6 148701955 148702074 -814963 + ORR1E LTR MaLR 60 175 -184 3 1719 333 0 0 0 chr6 148702074 148702111 -814926 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1719 450 0 0 0 chr6 148702111 148702160 -814877 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1719 461 271 14 43 chr6 148702160 148702178 -814859 + ORR1E LTR MaLR 176 193 -166 3 1719 269 134 0 0 chr6 148702212 148702270 -814767 + ORR1E LTR MaLR 304 370 0 3 1719 331 235 69 23 chr6 148702270 148702343 -814694 - B1F SINE Alu -71 78 2 3 1719 588 246 8 0 chr6 148702602 148702728 -814309 + B1_Mur4 SINE Alu 19 145 -5 3 1719 1260 236 44 60 chr6 148703704 148704070 -812967 + MTEa LTR MaLR 18 377 -2 3 1719 210 71 0 0 chr6 148704102 148704130 -812907 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1719 305 317 108 0 chr6 148704548 148704668 -812369 - Charlie8 DNA MER1_type -2252 176 44 3 1719 531 0 0 0 chr6 148705018 148705077 -811960 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1719 858 246 70 68 chr6 148705134 148705326 -811711 - L1MA9 LINE L1 -26 6286 6107 3 1719 2064 82 29 26 chr6 148705326 148705639 -811398 + L1_Mus3 LINE L1 6325 6638 0 3 1719 858 246 70 68 chr6 148705639 148705829 -811208 - L1MA9 LINE L1 -206 6106 5903 3 1719 285 296 53 23 chr6 148706367 148706584 -810453 - L1MA9 LINE L1 -528 5784 5560 3 1719 189 0 0 0 chr6 148706629 148706650 -810387 + (GGGAGA)n Simple_repeat Simple_repeat 3 23 0 3 1719 324 0 0 0 chr6 148707102 148707138 -809899 + (TTA)n Simple_repeat Simple_repeat 3 38 0 3 1719 198 103 0 0 chr6 148707138 148707166 -809871 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1719 255 330 124 11 chr6 148707175 148707264 -809773 - RSINE1 SINE B4 -39 126 28 3 1719 189 74 0 0 chr6 148707269 148707296 -809741 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 1719 1203 50 0 6 chr6 148707296 148707457 -809580 - B2_Mm1t SINE B2 -33 160 1 3 1719 568 232 67 86 chr6 148707485 148707590 -809447 + RMER17C LTR ERVK 147 262 -148 3 1719 735 71 0 0 chr6 148707590 148707688 -809349 + (TCCC)n Simple_repeat Simple_repeat 4 101 0 3 1719 568 232 67 86 chr6 148707688 148707851 -809186 + RMER17C LTR ERVK 263 410 0 3 1719 1018 172 43 64 chr6 148707866 148708159 -808878 + MT2A LTR ERVL 94 517 -84 3 1719 420 20 0 0 chr6 148708159 148708199 -808838 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 1719 528 16 0 0 chr6 148708199 148708260 -808777 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1719 420 20 0 0 chr6 148708260 148708270 -808767 + (TA)n Simple_repeat Simple_repeat 1 10 0 3 1719 851 128 0 8 chr6 148708290 148708424 -808613 - B3 SINE B2 -83 133 1 3 1719 708 267 12 0 chr6 148708477 148708638 -808399 + RSINE1 SINE B4 3 165 0 3 1719 203 152 0 0 chr6 148708649 148708682 -808355 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 3 1719 319 239 28 0 chr6 148709053 148709124 -807913 + ID4_ SINE ID 1 73 -10 4 1719 507 17 0 0 chr6 148709130 148709190 -807847 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1719 379 241 17 9 chr6 148709283 148709398 -807639 + PB1D7 SINE Alu 1 116 -33 4 1719 2212 152 77 24 chr6 148709398 148709816 -807221 + RMER1B Other Other 623 1062 -4 4 1719 354 229 143 0 chr6 148709877 148709982 -807055 + RSINE1 SINE B4 43 162 -3 4 1719 261 0 0 0 chr6 148710706 148710735 -806302 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1719 426 20 0 0 chr6 148710916 148710967 -806070 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1719 246 227 59 40 chr6 148711052 148711112 -805925 + MER76 LTR ERVL 583 645 -46 4 1719 2746 145 96 15 chr6 148711112 148711644 -805393 - RMER15 LTR ERVL 0 575 1 4 1719 246 227 59 40 chr6 148711644 148711684 -805353 + MER76 LTR ERVL 646 685 -6 4 1719 393 330 145 18 chr6 148711745 148711973 -805064 + L1M4c LINE L1 42 298 -6086 4 1719 235 264 111 52 chr6 148712001 148712074 -804963 + L1M4c LINE L1 5345 5422 -960 4 1719 437 243 41 48 chr6 148712074 148712221 -804816 + B1F2 SINE Alu 3 148 -1 4 1719 235 264 111 52 chr6 148712221 148712319 -804718 + L1M4c LINE L1 5423 5526 -856 4 1719 1654 222 94 26 chr6 148712640 148713051 -803986 + RLTR20C LTR ERVK 1 444 -90 4 1719 360 64 0 0 chr6 148713051 148713098 -803939 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1719 1654 222 94 26 chr6 148713098 148713186 -803851 + RLTR20C LTR ERVK 445 534 0 4 1719 183 100 0 0 chr6 148713812 148713842 -803195 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1719 492 18 0 0 chr6 148713863 148713920 -803117 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1719 372 288 45 8 chr6 148713973 148714106 -802931 + MLT1F-int LTR MaLR 1352 1489 0 4 1719 323 242 189 0 chr6 148714154 148714249 -802788 - B3A SINE B2 -84 114 2 4 1719 313 241 71 87 chr6 148714636 148714763 -802274 - MLT1F2 LTR MaLR -292 268 144 4 1719 4322 106 165 4 chr6 148714833 148715635 -801402 + RMER17B LTR ERVK 1 931 -27 4 1719 464 238 57 146 chr6 148715703 148715850 -801187 + B4A SINE B4 96 232 -60 4 1719 972 130 68 45 chr6 148715850 148716027 -801010 + B2_Mm2 SINE B2 1 181 -14 4 1719 464 238 57 146 chr6 148716027 148716091 -800946 + B4A SINE B4 233 288 -4 4 1719 434 261 67 140 chr6 148716106 148716198 -800839 - L1M2 LINE L1 -1599 4541 4480 4 1719 1108 56 35 0 chr6 148716198 148716341 -800696 - B1_Mus1 SINE Alu 0 148 1 4 1719 434 261 67 140 chr6 148716341 148716604 -800433 - L1M2 LINE L1 -1661 4479 4212 4 1719 603 127 0 0 chr6 148716650 148716768 -800269 + (TC)n Simple_repeat Simple_repeat 2 119 0 4 1719 306 0 0 0 chr6 148716768 148716802 -800235 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1719 27 49 0 0 chr6 148716899 148716940 -800097 + AT_rich Low_complexity Low_complexity 1 41 0 4 1719 4057 101 99 21 chr6 148716980 148717543 -799494 - RMER17B LTR ERVK -25 933 328 4 1719 1104 66 7 0 chr6 148717543 148717679 -799358 + B1_Mus2 SINE Alu 1 137 -10 4 1719 968 25 0 8 chr6 148717679 148717799 -799238 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 4 1719 4057 139 100 91 chr6 148717799 148718179 -798858 - RMER17B LTR ERVK -576 330 2 4 1719 846 257 121 0 chr6 148718183 148718463 -798574 - L1M2 LINE L1 -1976 4167 3854 4 1719 279 0 0 0 chr6 148718476 148718507 -798530 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1719 486 0 0 0 chr6 148718507 148718560 -798477 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1719 299 284 0 10 chr6 148718610 148718713 -798324 + L1M3 LINE L1 4212 4313 -1827 4 1719 216 0 0 0 chr6 148718718 148718742 -798295 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 1719 509 244 35 62 chr6 148718808 148718952 -798085 - ID_B1 SINE B4 -3 221 82 4 1719 24 53 0 0 chr6 148719648 148719686 -797351 + AT_rich Low_complexity Low_complexity 1 38 0 4 1719 441 268 27 0 chr6 148720080 148720192 -796845 + B1F SINE Alu 17 131 -18 4 1719 262 237 75 50 chr6 148720217 148720297 -796740 + PB1D7 SINE Alu 39 120 0 4 1719 590 205 8 8 chr6 148721439 148721562 -795475 - ID_B1 SINE B4 0 224 102 4 1719 400 266 50 14 chr6 148721562 148721580 -795457 - B1F SINE Alu -1 148 3 4 1719 415 304 47 13 chr6 148721956 148722106 -794931 + ORR1E LTR MaLR 1 155 -204 4 1719 748 274 24 6 chr6 148722171 148722336 -794701 - B3A SINE B2 -30 168 1 4 1719 236 192 0 19 chr6 148722497 148722550 -794487 + ORR1E LTR MaLR 294 345 -34 4 1719 386 254 80 53 chr6 148722781 148722931 -794106 + ID_B1 SINE B4 69 222 -2 4 1719 657 209 64 7 chr6 148722932 148723072 -793965 + B1F1 SINE Alu 1 148 -1 4 1719 263 213 0 13 chr6 148723072 148723148 -793889 + GA-rich Low_complexity Low_complexity 2 76 0 4 1719 291 308 105 96 chr6 148723150 148723369 -793668 + ID_B1 SINE B4 2 222 -2 4 1719 355 115 31 47 chr6 148723308 148723372 -793665 + PB1D10 SINE Alu 53 115 -2 4 1719 614 269 110 128 chr6 148726355 148726435 -790602 + B4 SINE B4 3 86 -206 4 1719 222 62 0 0 chr6 148726435 148726467 -790570 + (CACAA)n Simple_repeat Simple_repeat 4 35 0 4 1719 614 269 110 128 chr6 148726467 148726676 -790361 + B4 SINE B4 87 287 -5 4 1719 436 144 183 32 chr6 148726910 148727003 -790034 + ID_B1 SINE B4 118 224 0 4 1719 537 250 39 11 chr6 148727043 148727221 -789816 + L1M2 LINE L1 5309 5491 -806 4 1719 810 186 62 8 chr6 148727221 148727404 -789633 + B3 SINE B2 1 194 -1 4 1719 331 242 39 46 chr6 148727406 148727536 -789501 + L1M2 LINE L1 5484 5612 -688 4 1719 667 230 44 7 chr6 148727539 148727675 -789362 + B1_Mur2 SINE Alu 1 141 -8 4 1719 321 243 0 28 chr6 148727682 148727759 -789278 + RSINE1 SINE B4 18 93 -72 4 1719 22 0 0 0 chr6 148727770 148727792 -789245 + AT_rich Low_complexity Low_complexity 1 22 0 4 1719 561 275 21 23 chr6 148727835 148728033 -789004 + L1M2 LINE L1 5614 5816 -2179 4 1719 465 267 0 0 chr6 148728033 148728138 -788899 + PB1D9 SINE Alu 16 120 0 4 1719 262 200 80 0 chr6 148728215 148728290 -788747 + L1M2 LINE L1 5808 5888 -412 4 1719 292 288 38 0 chr6 148728500 148728580 -788457 + B1F2 SINE Alu 1 83 -66 4 1719 368 256 47 0 chr6 148728577 148728663 -788374 + MLT1A0 LTR MaLR 229 318 -47 4 1719 1082 107 7 7 chr6 148729326 148729476 -787561 - B1_Mur4 SINE Alu 0 150 1 4 1719 947 174 0 0 chr6 148729597 148729746 -787291 - B1_Mur3 SINE Alu 0 149 1 4 1719 374 262 3 0 chr6 148729776 148729850 -787187 - ID4 SINE ID -72 80 5 4 1719 718 247 44 0 chr6 148729880 148730038 -786999 - RSINE1 SINE B4 0 165 1 4 1719 377 327 19 0 chr6 148730486 148730590 -786447 + PB1D10 SINE Alu 1 106 -11 4 1719 527 240 88 32 chr6 148730586 148730711 -786326 + RSINE1 SINE B4 5 136 -29 4 1719 189 0 0 0 chr6 148730734 148730755 -786282 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1719 357 82 0 0 chr6 148730755 148730804 -786233 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1719 1172 190 19 0 chr6 148730830 148731035 -786002 + B3 SINE B2 1 209 -7 4 1719 767 149 14 28 chr6 148731377 148731522 -785515 - URR1B DNA MER1_type 0 225 83 4 1719 316 282 0 0 chr6 148731623 148731644 -785393 + B4A SINE B4 65 85 -207 4 1719 535 277 62 0 chr6 148731644 148731774 -785263 + B1F SINE Alu 1 138 -11 4 1719 213 94 0 0 chr6 148732098 148732130 -784907 + (TAA)n Simple_repeat Simple_repeat 1 32 0 4 1719 936 84 0 0 chr6 148732183 148732314 -784723 + (TTTC)n Simple_repeat Simple_repeat 3 133 0 4 1719 708 225 78 20 chr6 148732393 148732596 -784441 + B3A SINE B2 8 214 -2 4 1719 335 192 137 0 chr6 148732604 148732677 -784360 + ID_B1 SINE B4 108 190 -34 4 1719 335 224 58 12 chr6 148732677 148732690 -784347 + PB1D10 SINE Alu 27 116 -1 4 1719 23 68 0 0 chr6 148732880 148732924 -784113 + AT_rich Low_complexity Low_complexity 1 44 0 4 1719 21 0 0 0 chr6 148733840 148733861 -783176 + AT_rich Low_complexity Low_complexity 1 21 0 4 1719 260 252 66 44 chr6 148733934 148734071 -782966 + L1MC5 LINE L1 7184 7323 -638 4 1719 536 219 58 8 chr6 148735413 148735533 -781504 - B1_Mur1 SINE Alu -15 134 9 4 1719 367 169 17 0 chr6 148735576 148735635 -781402 + B1_Mur3 SINE Alu 5 64 -85 4 1719 193 288 68 0 chr6 148735682 148735755 -781282 + MIRb SINE MIR 34 111 -157 4 1719 26 0 0 0 chr6 148736036 148736062 -780975 + AT_rich Low_complexity Low_complexity 1 26 0 4 1719 414 0 0 0 chr6 148736473 148736519 -780518 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1719 1037 195 110 5 chr6 148736862 148737053 -779984 - B3 SINE B2 -5 211 1 4 1719 732 350 91 0 chr6 148737101 148737410 -779627 + MER2 DNA MER2_type 9 345 0 4 1719 192 366 125 0 chr6 148737985 148738097 -778940 + L2a LINE L2 3286 3411 -15 4 1719 699 159 19 0 chr6 148738672 148738779 -778258 + B1_Mur1 SINE Alu 7 115 -34 4 1719 510 275 0 8 chr6 148738779 148738793 -778244 + ID_B1 SINE B4 88 207 -17 4 1719 973 154 0 20 chr6 148738813 148738965 -778072 + B1_Mur2 SINE Alu 1 149 0 4 1719 245 89 22 0 chr6 148738968 148739013 -778024 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 4 1719 216 0 0 0 chr6 148739164 148739188 -777849 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 1719 294 259 37 0 chr6 148739410 148739491 -777546 + CT-rich Low_complexity Low_complexity 5 88 0 4 1719 736 214 107 30 chr6 148739504 148739699 -777338 - ID_B1 SINE B4 -19 205 2 4 1719 266 209 0 0 chr6 148741368 148741411 -775626 - B1F1 SINE Alu -20 129 87 4 1719 236 375 50 0 chr6 148741437 148741517 -775520 - AluG_3 SINE Alu -91 220 137 4 1719 840 203 42 0 chr6 148741531 148741674 -775363 - B1_Mur3 SINE Alu 0 149 1 4 1719 760 237 115 10 chr6 148741795 148741825 -775212 - B3 SINE B2 -3 213 181 4 1719 227 31 0 30 chr6 148741825 148741858 -775179 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 4 1719 889 146 23 2 chr6 148741858 148742019 -775018 - B2_Mm2 SINE B2 -36 180 2 4 1719 21 57 0 0 chr6 148742024 148742059 -774978 + AT_rich Low_complexity Low_complexity 1 35 0 4 1719 2792 138 54 33 chr6 148742357 148742874 -774163 + RLTR11A LTR ERVK 1 528 0 4 1719 219 69 0 0 chr6 148742945 148742974 -774063 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1719 621 144 91 0 chr6 148743013 148743145 -773892 + Lx9 LINE L1 7499 7642 -2 5 1719 21 0 0 0 chr6 148743148 148743169 -773868 + AT_rich Low_complexity Low_complexity 1 21 0 5 1719 247 279 62 25 chr6 148744201 148744282 -772755 + PB1D7 SINE Alu 15 98 -22 5 1719 372 297 0 19 chr6 148744221 148744324 -772713 + ID_B1 SINE B4 118 218 -6 5 1719 189 268 11 128 chr6 148744460 148744554 -772483 + L2c LINE L2 3273 3355 -32 5 1719 247 321 35 12 chr6 148744675 148744760 -772277 - PB1D10 SINE Alu -2 115 29 5 1719 936 220 39 39 chr6 148744856 148745036 -772001 + B3A SINE B2 4 183 -15 5 1719 22 56 0 0 chr6 148745316 148745352 -771685 + AT_rich Low_complexity Low_complexity 1 36 0 5 1719 223 175 0 0 chr6 148745681 148745721 -771316 + A-rich Low_complexity Low_complexity 2 41 0 5 1719 195 42 0 0 chr6 148745799 148745823 -771214 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1719 539 214 17 43 chr6 148745860 148745977 -771060 + RSINE1 SINE B4 3 116 -49 5 1719 326 23 23 0 chr6 148745981 148746024 -771013 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1719 708 74 0 0 chr6 148746024 148746118 -770919 + (CA)n Simple_repeat Simple_repeat 1 95 0 5 1719 1275 48 0 0 chr6 148746182 148746328 -770709 + B1_Mm SINE Alu 2 147 0 5 1719 1105 219 24 5 chr6 148746547 148746758 -770279 - B3 SINE B2 0 216 2 5 1719 360 309 107 29 chr6 148746974 148747114 -769923 + RMER15 LTR ERVL 298 448 -127 5 1719 187 356 69 0 chr6 148747830 148747931 -769106 - MIR3 SINE MIR -6 202 95 5 1719 670 259 17 69 chr6 148749063 148749237 -767800 + RSINE1 SINE B4 1 165 0 5 1719 324 342 62 120 chr6 148749422 148749652 -767385 + B4A SINE B4 1 219 -73 5 1719 1248 203 5 14 chr6 148749652 148749867 -767170 + B3 SINE B2 4 216 0 5 1719 324 342 62 120 chr6 148749867 148749945 -767092 + B4A SINE B4 220 291 -1 5 1719 241 215 104 30 chr6 148750738 148750805 -766232 - L2b LINE L2 -8 3367 3296 5 1719 698 235 60 0 chr6 148751137 148751286 -765751 - B3 SINE B2 -30 186 29 5 1719 24 0 0 0 chr6 148751427 148751451 -765586 + AT_rich Low_complexity Low_complexity 1 24 0 5 1719 261 342 41 0 chr6 148751507 148751518 -765519 + B4 SINE B4 75 88 -204 5 1719 308 347 28 0 chr6 148751518 148751634 -765403 + B1F1 SINE Alu 1 117 0 5 1719 898 219 10 81 chr6 148751682 148751868 -765169 + B3A SINE B2 1 179 -19 5 1719 309 26 0 0 chr6 148751868 148751906 -765131 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1719 898 219 10 81 chr6 148751906 148751928 -765109 + B3A SINE B2 180 194 -4 5 1719 452 293 154 50 chr6 148751958 148752159 -764878 + ID_B1 SINE B4 2 223 -1 5 1719 773 88 12 3 chr6 148753706 148753830 -763207 + B1_Mus1 SINE Alu 3 127 -22 5 1719 1007 155 7 0 chr6 148753877 148754025 -763012 + B1_Mur3 SINE Alu 1 149 0 5 1719 49 18 0 0 chr6 148754227 148754283 -762754 + AT_rich Low_complexity Low_complexity 1 56 0 5 1719 881 101 255 0 chr6 148754683 148754832 -762205 + B2_Mm1t SINE B2 4 190 -3 5 1719 1771 148 7 63 chr6 148755322 148755655 -761382 + ORR1B2 LTR MaLR 1 280 -87 5 1719 586 171 248 0 chr6 148755655 148755772 -761265 - B1_Mus1 SINE Alu -1 147 2 5 1719 894 199 5 259 chr6 148755772 148755866 -761171 + ORR1B2 LTR MaLR 238 319 -10 5 1719 1593 44 38 0 chr6 148756111 148756294 -760743 + B2_Mm2 SINE B2 2 191 -4 5 1719 904 185 7 7 chr6 148756839 148756986 -760051 - B1_Mur4 SINE Alu -1 149 3 5 1719 2127 158 42 11 chr6 148757681 148758059 -758978 - RMER1B Other Other -29 1037 648 5 1719 656 262 73 13 chr6 148759993 148760144 -756893 + RSINE1 SINE B4 3 162 -3 5 1719 677 299 72 0 chr6 148760848 148761042 -755995 - ID_B1 SINE B4 -15 209 2 5 1719 222 174 0 0 chr6 148761057 148761103 -755934 + (TTGG)n Simple_repeat Simple_repeat 1 46 0 5 1719 4215 116 34 13 chr6 148761103 148761809 -755228 + RMER6A LTR ERVK 36 756 0 5 1719 464 358 0 14 chr6 148761809 148761948 -755089 - ID_B1 SINE B4 -8 216 80 5 1719 239 342 80 18 chr6 148762413 148762526 -754511 + PB1D7 SINE Alu 1 120 0 5 1719 195 69 0 0 chr6 148762833 148762862 -754175 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1719 957 34 0 0 chr6 148762930 148763047 -753990 + B1_Mm SINE Alu 31 147 0 5 1719 195 42 0 0 chr6 148763047 148763071 -753966 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1719 636 215 52 0 chr6 148763506 148763641 -753396 + B1_Mur3 SINE Alu 1 142 -7 5 1719 28 29 0 0 chr6 148763644 148763679 -753358 + AT_rich Low_complexity Low_complexity 1 35 0 5 1719 1241 297 75 58 chr6 148764023 148764621 -752416 + RLTR18 LTR ERVK 8 615 -1 5 1719 443 209 24 16 chr6 148765403 148765504 -751533 + PB1D10 SINE Alu 19 117 -32 5 1719 639 201 0 0 chr6 148765554 148765693 -751344 + GA-rich Low_complexity Low_complexity 1 139 0 5 1719 543 176 18 25 chr6 148765993 148766106 -750931 + PB1D7 SINE Alu 23 122 -27 5 1720 4261 199 99 3 chr6 148767066 148767928 -749109 + RMER1A Other Other 87 1030 0 5 1720 558 155 0 0 chr6 148768073 148768189 -748848 + GA-rich Low_complexity Low_complexity 2 117 0 5 1720 348 217 52 0 chr6 148768237 148768352 -748685 + (TAGA)n Simple_repeat Simple_repeat 2 122 0 5 1720 757 249 10 97 chr6 148768879 148769075 -747962 - ID_B1 SINE B4 -45 179 1 5 1720 824 272 46 23 chr6 148769804 148770022 -747015 + ID_B1 SINE B4 2 224 0 5 1720 414 278 25 25 chr6 148770876 148770994 -746043 - B4A SINE B4 -170 122 5 5 1720 383 295 145 15 chr6 148771010 148771141 -745896 + B1F SINE Alu 2 149 0 5 1720 265 323 0 0 chr6 148771611 148771676 -745361 + B4 SINE B4 82 146 -146 5 1720 192 234 0 0 chr6 148771781 148771828 -745209 + GA-rich Low_complexity Low_complexity 2 48 0 5 1720 329 248 170 63 chr6 148771829 148771870 -745167 + B4A SINE B4 58 198 -94 5 1720 564 184 27 9 chr6 148771870 148771980 -745057 + PB1D9 SINE Alu 9 120 0 5 1720 261 0 0 0 chr6 148772310 148772339 -744698 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1720 885 45 0 0 chr6 148772339 148772451 -744586 - B1_Mm SINE Alu -9 138 27 5 1720 1158 280 25 16 chr6 148772499 148772866 -744171 - Lx8 LINE L1 0 7473 7104 5 1720 378 61 0 0 chr6 148773169 148773218 -743819 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1720 1238 82 0 0 chr6 148773218 148773365 -743672 - B1_Mus1 SINE Alu 0 148 2 5 1720 21 36 0 0 chr6 148773412 148773440 -743597 + AT_rich Low_complexity Low_complexity 1 28 0 5 1720 1556 54 5 0 chr6 148773688 148773872 -743165 - B2_Mm1t SINE B2 -7 186 2 5 1720 1355 230 85 68 chr6 148774002 148774356 -742681 + MTEa LTR MaLR 20 379 0 5 1720 25 0 0 0 chr6 148774493 148774518 -742519 + AT_rich Low_complexity Low_complexity 1 25 0 5 1720 328 294 128 36 chr6 148774849 148775153 -741884 + RMER17C LTR ERVK 34 365 -45 5 1720 225 0 0 0 chr6 148775316 148775341 -741696 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1720 416 255 0 41 chr6 148775341 148775432 -741605 - RSINE1 SINE B4 -75 90 4 5 1720 1070 164 141 16 chr6 148775450 148775642 -741395 - B3 SINE B2 0 216 1 5 1720 856 149 7 34 chr6 148775656 148775802 -741235 - B1_Mus1 SINE Alu 0 148 7 5 1720 393 238 9 82 chr6 148775706 148775816 -741221 - MT2B LTR ERVL -345 256 155 5 1720 248 269 162 15 chr6 148775831 148775899 -741138 + PB1D9 SINE Alu 1 78 -69 5 1720 2144 203 55 30 chr6 148775908 148776032 -741005 + RLTR11A2 LTR ERVK 7 124 -403 5 1720 450 0 0 0 chr6 148776032 148776082 -740955 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1720 2144 203 55 30 chr6 148776082 148776465 -740572 + RLTR11A2 LTR ERVK 125 526 -1 5 1720 180 0 0 0 chr6 148776558 148776578 -740459 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 5 1720 855 19 0 0 chr6 148776610 148776715 -740322 - B1_Mus2 SINE Alu 0 147 43 5 1720 667 244 34 32 chr6 148776743 148776932 -740105 + B3A SINE B2 1 185 -10 5 1720 656 282 28 22 chr6 148776935 148777116 -739921 + B3A SINE B2 1 182 -16 5 1720 21 36 0 0 chr6 148777121 148777149 -739888 + AT_rich Low_complexity Low_complexity 1 28 0 5 1720 621 225 69 49 chr6 148777213 148777386 -739651 + B3A SINE B2 7 180 -18 5 1720 594 244 17 0 chr6 148777439 148777558 -739479 + B1_Mus2 SINE Alu 1 121 -26 5 1720 412 330 52 0 chr6 148778575 148778748 -738289 - MER5A DNA MER1_type -6 183 2 5 1720 586 220 28 64 chr6 148778896 148779037 -738000 + B1_Mur1 SINE Alu 2 137 -12 5 1720 252 0 0 0 chr6 148779089 148779117 -737920 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1720 209 269 0 19 chr6 148779620 148779673 -737364 + GA-rich Low_complexity Low_complexity 1 52 0 5 1720 279 0 0 0 chr6 148780540 148780571 -736466 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1720 183 269 19 0 chr6 148780846 148780898 -736139 + L2 LINE L2 2747 2799 -620 5 1720 3379 127 158 45 chr6 148780985 148781635 -735402 + RMER19A LTR ERVK 4 727 -10 5 1720 451 240 42 0 chr6 148781655 148781751 -735286 - PB1D7 SINE Alu -7 113 14 5 1720 651 231 142 126 chr6 148782288 148782471 -734566 + B3 SINE B2 2 190 -26 5 1720 1761 134 93 13 chr6 148782726 148783028 -734009 - ORR1A3 LTR MaLR 0 326 1 5 1720 897 222 62 38 chr6 148783269 148783480 -733557 - B3 SINE B2 0 216 1 5 1720 180 0 0 0 chr6 148783487 148783507 -733530 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1720 518 233 58 0 chr6 148783514 148783617 -733420 + PB1D7 SINE Alu 2 110 -10 6 1720 669 25 0 0 chr6 148783617 148783696 -733341 + (GA)n Simple_repeat Simple_repeat 2 80 0 6 1720 1848 149 53 77 chr6 148783828 148784152 -732885 + ORR1C2 LTR MaLR 3 338 -46 6 1720 1081 129 42 31 chr6 148784152 148784344 -732693 + B2_Mm2 SINE B2 2 195 0 6 1720 1848 149 53 77 chr6 148784344 148784396 -732641 + ORR1C2 LTR MaLR 339 370 -14 6 1720 1357 209 35 52 chr6 148784527 148784875 -732162 - RLTR15 LTR ERVK -17 342 1 6 1720 266 220 28 0 chr6 148784974 148785054 -731983 + L1MD1 LINE L1 5527 5610 -2385 6 1720 23 0 0 0 chr6 148785142 148785165 -731872 + AT_rich Low_complexity Low_complexity 1 23 0 6 1720 790 156 7 69 chr6 148785176 148785321 -731716 + B1_Mur3 SINE Alu 1 136 -13 6 1720 205 267 0 0 chr6 148785334 148785379 -731658 + GA-rich Low_complexity Low_complexity 1 45 0 6 1720 2736 140 79 152 chr6 148785391 148786050 -730987 + RMER19C LTR ERVK 1 611 0 6 1720 308 290 56 56 chr6 148786099 148786296 -730741 - RLTR15 LTR ERVK -18 341 145 6 1720 348 217 113 95 chr6 148786326 148786494 -730543 - RLTR15 LTR ERVK -188 171 1 6 1720 265 266 70 147 chr6 148786556 148786658 -730379 + RLTR12B LTR ERVK 15 110 -418 6 1720 2682 29 0 0 chr6 148786658 148786970 -730067 - L1_Mus1 LINE L1 0 6567 6256 6 1720 207 0 0 0 chr6 148786979 148787002 -730035 + (CTATT)n Simple_repeat Simple_repeat 4 26 0 6 1720 265 266 70 147 chr6 148787002 148787175 -729862 + RLTR12B LTR ERVK 117 278 -250 6 1720 981 219 29 19 chr6 148787192 148787397 -729640 + MTE2a LTR MaLR 173 379 0 6 1720 462 223 49 35 chr6 148787593 148787737 -729300 + L1MD1 LINE L1 6096 6241 -1 6 1720 1458 221 183 22 chr6 148787779 148788140 -728897 + MTD LTR MaLR 1 419 0 6 1720 189 219 146 0 chr6 148788345 148788386 -728651 + MIRc SINE MIR 160 206 -62 6 1720 422 272 152 0 chr6 148789114 148789239 -727798 + ID_B1 SINE B4 73 216 -8 6 1720 276 143 61 0 chr6 148789197 148789246 -727791 + PB1 SINE Alu 76 127 0 6 1720 227 289 0 0 chr6 148789246 148789291 -727746 + 5S rRNA rRNA 1 45 -76 6 1720 545 350 19 24 chr6 148789603 148789808 -727229 + B4 SINE B4 3 206 -86 6 1720 473 229 9 19 chr6 148789712 148789819 -727218 + B1_Mur2 SINE Alu 22 127 -22 6 1720 24 85 0 0 chr6 148790175 148790234 -726803 + AT_rich Low_complexity Low_complexity 1 59 0 6 1720 967 170 0 0 chr6 148790707 148790854 -726183 - B1_Mus1 SINE Alu -1 147 1 6 1720 456 67 0 0 chr6 148792412 148792472 -724565 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1720 585 309 68 32 chr6 148792481 148792759 -724278 - B4A SINE B4 0 292 5 6 1720 1232 172 5 23 chr6 148793002 148793222 -723815 + B3 SINE B2 1 216 0 6 1720 222 37 0 0 chr6 148793376 148793403 -723634 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1720 351 291 118 0 chr6 148794011 148794121 -722916 + RSINE1 SINE B4 3 125 -40 6 1720 363 44 0 0 chr6 148794142 148794187 -722850 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1720 271 316 114 42 chr6 148794405 148794589 -722448 + MIRm SINE MIR 7 184 -24 6 1720 729 189 0 128 chr6 148795495 148795659 -721378 - B1_Mus2 SINE Alu -2 145 3 6 1720 1561 42 0 35 chr6 148795751 148795950 -721087 + B2_Mm1t SINE B2 2 193 0 6 1720 200 31 62 0 chr6 148796111 148796143 -720894 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1720 1193 61 0 0 chr6 148796144 148796291 -720746 - B1_Mus1 SINE Alu 0 148 2 6 1720 318 195 0 0 chr6 148796871 148796948 -720089 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 1720 363 301 152 5 chr6 148797000 148797210 -719827 + L1MB4 LINE L1 5792 6032 -148 6 1720 684 314 140 24 chr6 148797252 148797715 -719322 + RLTR12B LTR ERVK 1 517 -11 6 1720 436 313 30 0 chr6 148797738 148797872 -719165 + B1_Mur1 SINE Alu 2 139 -10 6 1720 776 256 77 25 chr6 148797937 148798133 -718904 - ID_B1 SINE B4 -17 207 2 6 1720 328 209 164 0 chr6 148798717 148798784 -718253 + B3 SINE B2 1 78 -138 6 1720 279 0 0 0 chr6 148798821 148798852 -718185 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1720 631 173 9 0 chr6 148798861 148798971 -718066 + B1_Mus1 SINE Alu 38 148 0 6 1720 3372 139 11 22 chr6 148799040 148799585 -717452 + RLTR20A LTR ERVK 1 539 -2 6 1720 753 267 198 8 chr6 148800057 148800541 -716496 + L1MB1 LINE L1 5322 5897 -271 6 1720 452 290 57 14 chr6 148800553 148800693 -716344 + RSINE1 SINE B4 8 153 -12 6 1720 563 258 25 213 chr6 148800823 148800867 -716170 - MTD LTR MaLR 0 419 385 6 1720 1531 43 27 0 chr6 148800867 148801055 -715982 + B2_Mm2 SINE B2 1 193 -2 6 1720 563 258 25 213 chr6 148801055 148801325 -715712 - MTD LTR MaLR -35 384 164 6 1720 491 0 0 17 chr6 148801329 148801389 -715648 + (CACAC)n Simple_repeat Simple_repeat 1 59 0 6 1720 595 293 26 52 chr6 148801402 148801441 -715596 - MTD LTR MaLR -216 203 168 6 1720 374 0 22 0 chr6 148801441 148801487 -715550 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1720 595 293 26 52 chr6 148801487 148801638 -715399 - MTD LTR MaLR -252 167 18 6 1720 606 237 35 49 chr6 148801648 148801874 -715163 - RLTR15 LTR ERVK -134 225 3 6 1720 511 214 20 15 chr6 148801879 148802000 -715037 + B1F2 SINE Alu 5 148 -1 6 1720 1532 250 57 7 chr6 148802000 148802419 -714618 + Lx8 LINE L1 6270 6709 -764 6 1720 229 238 64 106 chr6 148802472 148802660 -714377 + YREP_Mm Unknown Unknown 117 296 -1516 6 1720 1032 47 0 0 chr6 148802536 148802664 -714373 - B1_Mus1 SINE Alu -3 145 18 6 1720 2199 136 39 0 chr6 148802662 148803023 -714014 + RMER6A LTR ERVK 85 459 -297 6 1720 1288 230 79 106 chr6 148803025 148803307 -713730 + MYSERV-int LTR ERVK 5424 5724 -826 6 1720 705 126 0 0 chr6 148803307 148803418 -713619 + (TGGA)n Simple_repeat Simple_repeat 3 113 0 6 1720 1288 230 79 106 chr6 148803418 148803510 -713527 + MYSERV-int LTR ERVK 5725 5797 -753 6 1720 1154 82 0 0 chr6 148803510 148803657 -713380 - B1_Mus2 SINE Alu 0 147 1 6 1720 1288 230 79 106 chr6 148803657 148803865 -713172 + MYSERV-int LTR ERVK 5798 5990 -560 6 1720 418 165 0 30 chr6 148803866 148803966 -713071 + GA-rich Low_complexity Low_complexity 1 97 0 6 1720 1574 190 43 122 chr6 148803972 148804536 -712501 + MYSERV6-int LTR ERVK 8424 8942 -17 6 1720 268 61 41 0 chr6 148804543 148804562 -712475 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 6 1720 1128 83 0 0 chr6 148804562 148804706 -712331 + B1_Mus2 SINE Alu 1 144 -3 6 1720 268 61 41 0 chr6 148804706 148804735 -712302 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 6 1720 444 283 191 66 chr6 148804769 148805190 -711847 + RLTR12B LTR ERVK 47 512 -15 6 1720 853 252 14 28 chr6 148805649 148805865 -711172 - B3 SINE B2 -3 213 1 6 1720 570 86 0 0 chr6 148805909 148805990 -711047 + (TCC)n Simple_repeat Simple_repeat 2 82 0 6 1720 1122 69 0 14 chr6 148805990 148806137 -710900 - B1_Mus1 SINE Alu -2 146 2 6 1720 1281 206 98 69 chr6 148806471 148806736 -710301 + Lx7 LINE L1 7247 7505 -191 6 1720 207 88 0 0 chr6 148806736 148806770 -710267 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 6 1720 1281 206 98 69 chr6 148806770 148806941 -710096 + Lx7 LINE L1 7506 7696 0 6 1720 441 301 40 59 chr6 148808199 148808351 -708686 - B3A SINE B2 0 198 50 6 1720 357 308 48 0 chr6 148808469 148808573 -708464 + PB1D10 SINE Alu 3 111 -6 6 1720 733 246 140 8 chr6 148808583 148808771 -708266 + B3 SINE B2 1 191 -25 6 1720 349 299 37 0 chr6 148809163 148809270 -707767 - MIRb SINE MIR -15 253 143 6 1720 343 226 7 145 chr6 148809272 148809417 -707620 + MT2B LTR ERVL 140 264 -337 6 1720 678 212 7 36 chr6 148809308 148809445 -707592 + B1_Mus1 SINE Alu 9 141 -7 6 1720 924 142 0 41 chr6 148809456 148809603 -707434 + B1_Mus1 SINE Alu 2 142 -6 6 1720 429 20 0 0 chr6 148809730 148809780 -707257 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1720 219 200 194 32 chr6 148809786 148809848 -707189 + B1_Mur1 SINE Alu 67 138 -11 6 1720 278 336 62 0 chr6 148810134 148810247 -706790 + PB1D7 SINE Alu 1 120 0 6 1720 499 229 90 0 chr6 148810571 148810693 -706344 + B1F1 SINE Alu 3 135 -14 6 1720 378 129 0 0 chr6 148810722 148810784 -706253 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1720 21 36 0 0 chr6 148811364 148811392 -705645 + AT_rich Low_complexity Low_complexity 1 28 0 6 1720 216 370 96 24 chr6 148812530 148812738 -704299 - MIRb SINE MIR -26 242 20 6 1720 665 189 8 24 chr6 148812879 148813004 -704033 + B1_Mur1 SINE Alu 18 140 -9 6 1720 23 33 0 0 chr6 148813199 148813229 -703808 + AT_rich Low_complexity Low_complexity 1 30 0 6 1720 2097 256 65 66 chr6 148813466 148814174 -702863 + Lx8 LINE L1 6607 7313 -160 6 1720 204 167 62 0 chr6 148814291 148814339 -702698 + A-rich Low_complexity Low_complexity 3 53 0 6 1720 786 162 41 21 chr6 148814681 148814826 -702211 - B1_Mur3 SINE Alu -1 148 1 6 1720 1088 89 0 25 chr6 148815201 148815226 -701811 - B2_Mm2 SINE B2 -12 183 162 6 1720 261 0 0 0 chr6 148815226 148815255 -701782 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 6 1720 1088 95 10 55 chr6 148815255 148815413 -701624 - B2_Mm2 SINE B2 -34 161 27 6 1720 1142 95 0 0 chr6 148815413 148815560 -701477 - B1_Mus1 SINE Alu 0 148 2 6 1720 590 128 68 233 chr6 148815560 148815600 -701437 - B3 SINE B2 -176 40 1 6 1720 582 267 58 58 chr6 148815603 148815810 -701227 - B3 SINE B2 -7 209 3 6 1720 487 43 0 28 chr6 148816038 148816110 -700927 + (TTGG)n Simple_repeat Simple_repeat 2 71 0 6 1720 285 29 0 0 chr6 148816112 148816146 -700891 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1720 436 221 0 23 chr6 148816163 148816251 -700786 - B1_Mur1 SINE Alu -2 147 62 6 1720 243 0 0 0 chr6 148816262 148816289 -700748 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1720 843 191 0 7 chr6 148816506 148816648 -700389 + B1_Mur2 SINE Alu 9 149 0 6 1720 807 182 7 47 chr6 148816656 148816806 -700231 + B1_Mur3 SINE Alu 6 149 0 6 1720 237 132 0 0 chr6 148816831 148816869 -700168 + (TTTC)n Simple_repeat Simple_repeat 4 41 0 6 1720 1135 101 0 0 chr6 148816869 148817017 -700020 - B1_Mus1 SINE Alu 0 148 1 7 1720 1210 35 7 0 chr6 148817063 148817208 -699829 - B1_Mus2 SINE Alu 0 147 2 7 1720 42 48 0 0 chr6 148817343 148817406 -699631 + AT_rich Low_complexity Low_complexity 1 63 0 7 1720 1069 89 124 6 chr6 148818369 148818538 -698499 + B2_Mm2 SINE B2 1 189 -6 7 1720 321 89 0 0 chr6 148819218 148819263 -697774 + (T)n Simple_repeat Simple_repeat 1 45 0 7 1720 1171 48 0 26 chr6 148819263 148819414 -697623 - B1_Mm SINE Alu 0 147 1 7 1720 254 200 0 0 chr6 148819559 148819599 -697438 + ID4 SINE ID 12 51 -32 7 1720 1092 103 0 0 chr6 148819775 148819921 -697116 + B1_Mm SINE Alu 2 147 0 7 1720 216 0 0 0 chr6 148819921 148819945 -697092 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 7 1720 435 194 50 4 chr6 148820013 148820136 -696901 - B1_Mur3 SINE Alu -1 148 23 7 1720 542 289 79 47 chr6 148820363 148820577 -696460 + ID_B1 SINE B4 2 222 -2 7 1720 903 59 0 32 chr6 148820608 148820766 -696271 + RMER17B LTR ERVK 308 460 -498 7 1720 663 159 110 29 chr6 148820833 148820969 -696068 - B1_Mm SINE Alu 0 147 1 7 1720 346 271 85 8 chr6 148821364 148821494 -695543 + B1F2 SINE Alu 4 143 -6 7 1720 325 324 42 67 chr6 148822211 148822330 -694707 - PB1D10 SINE Alu -1 116 1 7 1720 2185 88 18 62 chr6 148822548 148822888 -694149 + ORR1A4 LTR MaLR 1 325 -4 7 1720 614 230 0 0 chr6 148822918 148823031 -694006 - PB1D7 SINE Alu 0 120 8 7 1720 720 266 48 106 chr6 148823210 148823366 -693671 - L1ME1 LINE L1 -240 5939 5825 7 1720 749 224 0 70 chr6 148823366 148823427 -693610 - B1F2 SINE Alu -1 148 92 7 1720 1331 91 16 0 chr6 148823427 148823614 -693423 + B2_Mm1t SINE B2 1 190 -3 7 1720 749 224 0 70 chr6 148823614 148823710 -693327 - B1F2 SINE Alu -58 91 2 7 1720 720 266 48 106 chr6 148823710 148823949 -693088 - L1ME1 LINE L1 -355 5824 5567 7 1720 325 336 64 0 chr6 148823989 148824099 -692938 - PB1 SINE Alu -8 119 3 7 1720 821 271 54 36 chr6 148824191 148824473 -692564 - B4A SINE B4 -3 289 1 7 1720 1274 79 1 1 chr6 148825755 148825936 -691101 + B2_Mm2 SINE B2 3 183 -10 7 1720 278 213 188 47 chr6 148826598 148826726 -690311 - Lx8 LINE L1 -157 7316 7171 7 1720 660 236 7 0 chr6 148827016 148827156 -689881 + B1_Mur2 SINE Alu 2 142 -7 7 1720 882 130 8 22 chr6 148827173 148827307 -689730 + B1_Mur3 SINE Alu 12 143 -6 7 1720 799 218 69 10 chr6 148827331 148827535 -689502 + B3 SINE B2 1 216 0 7 1720 864 170 13 13 chr6 148827538 148827676 -689361 + B1_Mur4 SINE Alu 1 140 -10 7 1720 216 86 0 0 chr6 148827676 148827711 -689326 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1720 319 333 68 0 chr6 148827920 148828042 -688995 + B1F SINE Alu 17 147 0 7 1720 264 200 71 71 chr6 148828310 148828380 -688657 + RLTR25A LTR ERVK 513 582 -521 7 1720 702 65 11 0 chr6 148828329 148828422 -688615 + B1_Mus2 SINE Alu 53 146 -1 7 1720 216 0 0 0 chr6 148828423 148828447 -688590 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 7 1720 371 261 0 0 chr6 148828535 148828604 -688433 - ID4 SINE ID -14 69 1 7 1720 187 316 152 10 chr6 148828850 148828949 -688088 + L3 LINE CR1 1000 1112 -3377 7 1720 241 273 26 26 chr6 148829045 148829158 -687879 - RMER12 LTR ERVK -465 857 745 7 1720 858 218 40 25 chr6 148829231 148829433 -687604 + B3 SINE B2 2 206 -10 7 1720 879 215 66 5 chr6 148829494 148829690 -687347 + B3 SINE B2 3 210 -6 7 1720 3923 47 11 0 chr6 148829828 148830298 -686739 + MT2C_Mm LTR ERVL 1 475 0 7 1720 390 328 31 16 chr6 148830377 148830504 -686533 + B1F1 SINE Alu 1 129 -20 7 1720 384 307 61 59 chr6 148830588 148830865 -686172 + RLTR15 LTR ERVK 48 291 -68 7 1720 1503 53 11 5 chr6 148830883 148831073 -685964 + B2_Mm2 SINE B2 2 192 -3 7 1720 1214 151 169 8 chr6 148831140 148831401 -685636 + RLTR17 LTR ERVK 1 303 -389 7 1720 189 0 0 0 chr6 148831409 148831430 -685607 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 7 1720 660 90 0 11 chr6 148831451 148831541 -685496 - B2_Mm2 SINE B2 -106 89 1 7 1720 1759 155 47 22 chr6 148831541 148831834 -685203 + RLTR17 LTR ERVK 294 594 -98 7 1720 351 164 60 0 chr6 148831835 148831902 -685135 + RLTR31_Mm LTR ERVK 491 561 0 7 1720 493 282 182 13 chr6 148832117 148832283 -684754 + B3A SINE B2 5 190 -26 7 1720 234 293 67 0 chr6 148832264 148832339 -684698 - 4.5SRNA scRNA scRNA -6 88 9 7 1720 500 231 91 33 chr6 148832376 148832497 -684540 + RSINE1 SINE B4 3 130 -35 7 1720 30 0 0 0 chr6 148832505 148832535 -684502 + AT_rich Low_complexity Low_complexity 1 30 0 7 1720 1452 52 16 10 chr6 148832537 148832730 -684307 + B2_Mm2 SINE B2 2 195 0 7 1720 684 181 77 35 chr6 148833082 148833225 -683812 + B1_Mur3 SINE Alu 1 149 0 7 1720 1116 223 40 0 chr6 148833248 148833450 -683587 + B3 SINE B2 1 210 -6 7 1720 506 273 90 32 chr6 148833555 148833710 -683327 + RSINE1 SINE B4 2 165 0 7 1720 704 179 0 61 chr6 148833797 148833928 -683109 - B3 SINE B2 -92 124 2 7 1720 729 181 50 21 chr6 148833933 148834074 -682963 - B1_Mur4 SINE Alu 0 150 6 7 1720 233 258 30 15 chr6 148834196 148834263 -682774 + B4 SINE B4 11 78 -214 7 1720 951 176 227 0 chr6 148834491 148834667 -682370 + B3 SINE B2 1 216 0 7 1720 1231 160 16 0 chr6 148834692 148834879 -682158 + B2_Mm2 SINE B2 1 190 -5 7 1720 530 167 11 0 chr6 148834984 148835074 -681963 + B3 SINE B2 117 207 -9 7 1720 749 222 0 59 chr6 148835091 148835244 -681793 - B1_Mur2 SINE Alu 0 149 6 7 1720 534 288 0 99 chr6 148835096 148835277 -681760 - ID_B1 SINE B4 -3 221 59 7 1720 305 174 0 0 chr6 148835479 148835525 -681512 + ID4_ SINE ID 24 69 -14 7 1720 213 39 0 0 chr6 148835526 148835552 -681485 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1720 1191 144 114 38 chr6 148835674 148835884 -681153 + URR1A DNA MER1_type 1 226 0 7 1720 1038 255 15 0 chr6 148836183 148836387 -680650 + B3 SINE B2 1 207 -9 7 1720 623 158 93 50 chr6 148836915 148837055 -679982 - B1_Mur2 SINE Alu -2 147 2 7 1720 606 252 65 0 chr6 148837090 148837245 -679792 - B3 SINE B2 -5 211 47 7 1720 558 286 76 76 chr6 148837268 148837465 -679572 - B3A SINE B2 0 198 2 7 1720 297 0 0 0 chr6 148837510 148837543 -679494 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 7 1720 729 221 114 0 chr6 148837552 148837710 -679327 - B4 SINE B4 -93 199 24 7 1720 629 229 135 37 chr6 148838062 148838225 -678812 + B3A SINE B2 2 180 -18 7 1720 305 297 0 26 chr6 148838448 148838524 -678513 + B1F SINE Alu 1 74 -75 7 1720 733 185 104 0 chr6 148838942 148839077 -677960 + B1_Mur2 SINE Alu 1 149 0 7 1720 198 0 0 0 chr6 148839330 148839352 -677685 + (A)n Simple_repeat Simple_repeat 1 22 0 7 1720 197 178 0 22 chr6 148840454 148840500 -676537 + CT-rich Low_complexity Low_complexity 1 45 0 7 1720 391 212 28 199 chr6 148840510 148840608 -676429 - B3 SINE B2 -99 117 34 7 1720 683 236 43 7 chr6 148840608 148840749 -676288 - B1_Mm SINE Alu -1 146 1 7 1720 391 212 28 199 chr6 148840749 148840791 -676246 - B3 SINE B2 -183 33 1 7 1720 558 165 0 0 chr6 148840806 148840909 -676128 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 1720 575 274 56 44 chr6 148840910 148841070 -675967 - RSINE1 SINE B4 0 165 4 7 1720 344 292 0 109 chr6 148841166 148841285 -675752 + MER20 DNA MER1_type 54 159 -60 7 1720 1173 106 128 62 chr6 148841300 148841460 -675577 + URR1A DNA MER1_type 1 183 -43 7 1720 183 42 0 0 chr6 148841460 148841484 -675553 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1720 1194 66 0 0 chr6 148841484 148841621 -675416 - B1_Mus2 SINE Alu -10 137 1 7 1720 1173 106 128 62 chr6 148841621 148841670 -675367 + URR1A DNA MER1_type 184 224 -2 7 1720 1274 54 0 0 chr6 148841851 148841998 -675039 + B1_Mus2 SINE Alu 1 147 0 7 1720 279 79 0 0 chr6 148841998 148842036 -675001 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1720 701 251 77 16 chr6 148842046 148842240 -674797 + B3 SINE B2 2 207 -9 7 1720 592 133 319 0 chr6 148842663 148842776 -674261 + B1_Mur4 SINE Alu 2 150 0 7 1720 1298 34 0 0 chr6 148845334 148845481 -671556 + B1_Mus1 SINE Alu 2 148 0 7 1720 24 32 0 0 chr6 148845664 148845695 -671342 + AT_rich Low_complexity Low_complexity 1 31 0 7 1720 1058 168 16 27 chr6 148845868 148846052 -670985 - B3 SINE B2 -28 188 7 7 1720 349 233 29 118 chr6 148846331 148846433 -670604 + B1_Mur3 SINE Alu 1 93 -56 7 1720 260 273 4 38 chr6 148846733 148846813 -670224 + PB1D10 SINE Alu 21 97 -20 7 1720 347 275 0 0 chr6 148846837 148846917 -670120 + ID4_ SINE ID 1 80 -3 7 1720 1412 95 26 5 chr6 148846940 148847130 -669907 + B2_Mm2 SINE B2 2 195 0 7 1720 830 208 121 35 chr6 148847154 148847353 -669684 + B3 SINE B2 1 216 0 7 1720 715 204 41 21 chr6 148847366 148847511 -669526 + B1_Mur1 SINE Alu 2 149 0 7 1720 198 272 83 15 chr6 148847726 148847828 -669209 - L2c LINE L2 0 3387 3263 7 1720 594 202 0 63 chr6 148847858 148847985 -669052 + PB1D9 SINE Alu 2 120 0 7 1720 333 0 0 0 chr6 148848023 148848060 -668977 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 1720 653 261 31 31 chr6 148848064 148848226 -668811 - B3 SINE B2 -37 179 18 8 1720 309 247 52 31 chr6 148848218 148848238 -668799 + ORR1C2 LTR MaLR 324 343 -78 8 1720 414 0 0 0 chr6 148848238 148848284 -668753 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 8 1720 735 176 0 75 chr6 148848285 148848432 -668605 - B1_Mur4 SINE Alu -10 140 5 8 1720 479 82 27 0 chr6 148848432 148848505 -668532 + ORR1C2 LTR MaLR 310 384 0 8 1720 768 159 98 8 chr6 148848699 148848832 -668205 - B1F2 SINE Alu 0 149 5 8 1720 429 193 136 0 chr6 148848931 148849019 -668018 - B1_Mus1 SINE Alu -27 121 22 8 1720 2122 131 14 54 chr6 148849015 148849386 -667651 + RMER6A LTR ERVK 7 362 -394 8 1720 2147 130 82 25 chr6 148849680 148850082 -666955 + RMER6A LTR ERVK 332 756 0 8 1720 380 287 26 17 chr6 148850327 148850444 -666593 + PB1D9 SINE Alu 1 118 -2 8 1720 850 284 53 29 chr6 148850441 148850684 -666353 + B4A SINE B4 42 290 -2 8 1720 827 248 27 137 chr6 148851144 148851195 -665842 + ORR1D1 LTR MaLR 2 52 -322 8 1720 393 22 0 0 chr6 148851195 148851241 -665796 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1720 827 248 27 137 chr6 148851241 148851410 -665627 + ORR1D1 LTR MaLR 53 208 -166 8 1720 884 206 0 0 chr6 148851410 148851556 -665481 + B1_Mur4 SINE Alu 5 150 0 8 1720 827 256 81 126 chr6 148851556 148851686 -665351 + ORR1D1 LTR MaLR 209 370 0 8 1720 250 205 165 13 chr6 148851878 148851957 -665080 - MTEa LTR MaLR -1 378 288 8 1720 1723 158 28 49 chr6 148852226 148852541 -664496 - ORR1C1 LTR MaLR 0 378 71 8 1720 3087 205 48 43 chr6 148852541 148853871 -663166 - ORR1C1-int LTR MaLR 0 1370 29 8 1720 1209 119 11 11 chr6 148853882 148854069 -662968 - ORR1C1 LTR MaLR -8 359 173 8 1720 230 256 240 62 chr6 148854252 148854381 -662656 - MER5A DNA MER1_type -23 166 15 8 1720 471 233 0 53 chr6 148854582 148854677 -662360 + PB1D7 SINE Alu 18 107 -13 8 1720 623 277 7 13 chr6 148855172 148855322 -661715 + B1F1 SINE Alu 1 149 0 8 1720 287 170 10 83 chr6 148855379 148855459 -661578 + T-rich Low_complexity Low_complexity 18 90 0 8 1720 1205 41 0 58 chr6 148855459 148855614 -661423 - B1_Mm SINE Alu 0 147 2 8 1720 287 170 10 83 chr6 148855614 148855629 -661408 + T-rich Low_complexity Low_complexity 3 17 0 8 1720 1073 221 15 5 chr6 148855639 148855844 -661193 - B3 SINE B2 -7 209 3 8 1720 625 259 0 28 chr6 148855855 148855998 -661039 - B1F2 SINE Alu -5 144 6 8 1720 348 308 49 110 chr6 148855998 148856017 -661020 - B4 SINE B4 -69 221 70 8 1720 1337 75 16 0 chr6 148856083 148856269 -660768 + B2_Mm2 SINE B2 7 195 0 8 1720 251 173 173 0 chr6 148857046 148857098 -659939 - PB1D10 SINE Alu -56 61 1 8 1720 518 208 18 54 chr6 148857323 148857435 -659602 + PB1D10 SINE Alu 1 108 -9 8 1720 256 250 118 0 chr6 148857449 148857517 -659520 + ID4_ SINE ID 8 83 0 8 1720 659 249 126 14 chr6 148857662 148857851 -659186 + B3A SINE B2 1 195 0 8 1720 1245 55 0 0 chr6 148857926 148858072 -658965 - B1_Mus2 SINE Alu 0 147 2 8 1720 495 278 66 22 chr6 148858103 148858239 -658798 + MLT1F2 LTR MaLR 1 142 -418 8 1720 891 141 22 0 chr6 148858258 148858393 -658644 - B1_Mus2 SINE Alu -1 146 9 8 1720 903 281 71 47 chr6 148858404 148858763 -658274 + MLT2B1 LTR ERVL 4 467 -95 8 1720 349 294 12 12 chr6 148858806 148858892 -658145 + MLT1F2 LTR MaLR 234 319 -241 8 1720 290 273 53 126 chr6 148858989 148859047 -657990 + MT2B LTR ERVL 96 215 -385 8 1720 677 192 0 40 chr6 148859055 148859115 -657922 + PB1D9 SINE Alu 1 59 -61 8 1720 4608 59 23 53 chr6 148859115 148859720 -657317 + LTRIS_Mus LTR ERV1 1 587 0 8 1720 290 273 53 126 chr6 148859720 148859744 -657293 + MT2B LTR ERVL 217 235 -366 8 1720 677 192 0 40 chr6 148859744 148859784 -657253 + PB1D9 SINE Alu 60 120 0 8 1720 1273 62 0 0 chr6 148859790 148859936 -657101 + B1_Mus2 SINE Alu 2 147 0 8 1720 1726 32 0 0 chr6 148860142 148860328 -656709 - B2_Mm1t SINE B2 -6 187 2 8 1720 22 0 0 0 chr6 148860338 148860360 -656677 + AT_rich Low_complexity Low_complexity 1 22 0 8 1720 296 24 0 24 chr6 148860483 148860525 -656512 + (TATG)n Simple_repeat Simple_repeat 4 44 0 8 1720 783 82 238 0 chr6 148860525 148860647 -656390 - B2_Mm2 SINE B2 -42 153 3 8 1720 2761 88 113 27 chr6 148860694 148861138 -655899 + RLTR45 LTR ERVK 1 482 0 8 1720 317 197 13 0 chr6 148861140 148861216 -655821 + GA-rich Low_complexity Low_complexity 4 80 0 8 1720 213 335 61 90 chr6 148861243 148861522 -655515 - L2 LINE L2 -449 2970 2700 8 1720 338 0 0 23 chr6 148861694 148861737 -655300 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 8 1720 405 0 0 0 chr6 148861985 148862030 -655007 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1720 245 276 0 17 chr6 148862108 148862167 -654870 - ID4_ SINE ID -6 77 20 8 1720 243 146 0 0 chr6 148862431 148862472 -654565 + (TCC)n Simple_repeat Simple_repeat 3 43 0 8 1720 405 339 83 9 chr6 148862644 148862873 -654164 - HERV16-int LTR ERVL -3922 1074 829 8 1720 30 27 0 0 chr6 148863029 148863066 -653971 + AT_rich Low_complexity Low_complexity 1 37 0 8 1720 460 294 0 18 chr6 148863089 148863200 -653837 + ID_B1 SINE B4 91 199 -25 8 1720 291 54 0 0 chr6 148863486 148863523 -653514 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1720 225 0 0 0 chr6 148863523 148863547 -653490 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 8 1720 1217 77 0 0 chr6 148863550 148863693 -653344 + B1_Mus1 SINE Alu 1 143 -5 8 1720 236 203 48 56 chr6 148863699 148863824 -653213 + (TTAAA)n Simple_repeat Simple_repeat 3 126 0 8 1720 693 223 183 0 chr6 148864102 148864277 -652760 + B3 SINE B2 2 208 -8 8 1720 219 309 17 68 chr6 148864407 148864466 -652571 + B1F SINE Alu 1 56 -93 8 1720 389 214 265 39 chr6 148864485 148864587 -652450 + B3 SINE B2 1 125 -73 8 1720 1239 68 0 0 chr6 148864784 148864930 -652107 + B1_Mus1 SINE Alu 2 147 -1 8 1720 591 157 6 0 chr6 148865207 148865311 -651726 + B1_Mur2 SINE Alu 3 111 -9 8 1720 722 230 0 0 chr6 148865350 148865485 -651552 - B1_Mus1 SINE Alu -13 135 1 8 1720 345 271 159 36 chr6 148866611 148866674 -650363 + B4A SINE B4 14 93 -199 8 1720 214 304 68 10 chr6 148866674 148866777 -650260 + PB1D7 SINE Alu 3 111 -9 8 1720 23 33 0 0 chr6 148866983 148867013 -650024 + AT_rich Low_complexity Low_complexity 1 30 0 8 1720 1174 47 14 0 chr6 148867024 148867172 -649865 + B2_Mm2 SINE B2 3 152 -43 8 1720 434 100 12 0 chr6 148867202 148867272 -649765 + B2_Mm2 SINE B2 47 120 -96 8 1720 725 211 28 0 chr6 148867307 148867449 -649588 + B1_Mus2 SINE Alu 2 147 0 8 1720 1311 194 118 70 chr6 148867531 148867886 -649151 + ORR1D1 LTR MaLR 2 373 -1 8 1720 384 208 197 16 chr6 148868019 148868079 -648958 + MTD LTR MaLR 9 79 -340 8 1720 1159 174 256 13 chr6 148868079 148868388 -648649 + ORR1C2 LTR MaLR 1 384 0 8 1720 384 236 326 35 chr6 148868388 148868545 -648492 + MTD LTR MaLR 80 282 -137 8 1720 540 244 83 8 chr6 148868699 148868831 -648206 - RSINE1 SINE B4 -21 144 3 8 1720 1159 59 39 7 chr6 148869110 148869266 -647771 + B2_Mm2 SINE B2 1 162 -31 8 1720 229 25 0 91 chr6 148869266 148869310 -647727 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 8 1720 806 267 28 19 chr6 148869317 148869531 -647506 - B3 SINE B2 0 216 1 8 1720 992 139 39 34 chr6 148869531 148869545 -647492 + B2_Mm1t SINE B2 167 180 -13 8 1720 23 0 0 0 chr6 148871097 148871120 -645917 + AT_rich Low_complexity Low_complexity 1 23 0 8 1720 257 239 191 21 chr6 148871601 148871695 -645342 - RSINE1 SINE B4 -54 111 2 8 1720 509 100 11 0 chr6 148871931 148872021 -645016 + (TG)n Simple_repeat Simple_repeat 2 92 0 8 1720 391 269 172 40 chr6 148872026 148872177 -644860 - B4A SINE B4 -8 284 114 8 1720 604 315 18 12 chr6 148872666 148872833 -644204 - B3A SINE B2 -6 192 25 8 1720 1374 64 81 0 chr6 148872844 148872858 -644179 - B2_Mm1a SINE B2 -5 188 175 8 1720 432 0 0 0 chr6 148872858 148872906 -644131 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 8 1720 1374 64 81 0 chr6 148872906 148873064 -643973 - B2_Mm1a SINE B2 -19 174 3 8 1720 221 139 288 14 chr6 148873161 148873234 -643803 - B1_Mur3 SINE Alu -54 95 3 8 1720 256 289 211 0 chr6 148873370 148873460 -643577 - PB1D10 SINE Alu -8 109 1 8 1720 248 268 67 44 chr6 148873522 148873612 -643425 - B1_Mur2 SINE Alu -57 92 1 8 1720 836 128 17 0 chr6 148873811 148873928 -643109 - PB1D9 SINE Alu -1 119 1 8 1720 604 274 60 50 chr6 148874129 148874329 -642708 + MTE2b LTR MaLR 178 379 0 8 1720 201 74 0 0 chr6 148874913 148874940 -642097 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 1720 349 317 97 63 chr6 148875105 148875280 -641757 - B3A SINE B2 -15 183 3 8 1720 324 0 0 0 chr6 148876364 148876400 -640637 + (GA)n Simple_repeat Simple_repeat 1 36 0 8 1720 252 0 0 0 chr6 148876586 148876614 -640423 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1720 408 241 59 25 chr6 148876638 148876757 -640280 - RSINE1 SINE B4 -41 124 2 8 1720 291 240 40 30 chr6 148876757 148876852 -640185 - B4A SINE B4 -196 96 1 8 1720 492 278 83 48 chr6 148877513 148877688 -639349 + ID_B1 SINE B4 77 256 -36 8 1720 285 75 0 0 chr6 148877768 148877808 -639229 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1720 598 243 160 67 chr6 148877814 148877857 -639180 + B3 SINE B2 1 42 -174 8 1720 1512 45 67 0 chr6 148877857 148878017 -639020 + B2_Mm1a SINE B2 1 160 -33 8 1720 378 0 0 0 chr6 148878017 148878059 -638978 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 8 1720 1512 45 67 0 chr6 148878059 148878076 -638961 + B2_Mm1a SINE B2 161 188 -5 8 1720 598 243 160 67 chr6 148878076 148878226 -638811 + B3 SINE B2 43 212 -4 8 1720 1345 57 90 6 chr6 148878249 148878426 -638611 + B2_Mm1a SINE B2 2 193 0 8 1720 273 309 75 0 chr6 148878471 148878565 -638472 + B3A SINE B2 38 138 -60 8 1720 277 301 14 0 chr6 148879336 148879409 -637628 + Lx8 LINE L1 7266 7339 -134 8 1720 692 180 49 0 chr6 148879440 148879562 -637475 - B1_Mur4 SINE Alu -9 141 14 8 1720 339 85 0 0 chr6 148879569 148879616 -637421 + (GA)n Simple_repeat Simple_repeat 1 47 0 9 1720 756 221 7 28 chr6 148879776 148879920 -637117 + B1_Mur2 SINE Alu 1 141 -8 9 1720 1179 102 108 0 chr6 148879932 148880099 -636938 + B2_Mm2 SINE B2 2 186 -9 9 1720 528 186 137 75 chr6 148880129 148880305 -636732 + B3 SINE B2 10 185 -10 9 1720 656 214 168 12 chr6 148880296 148880478 -636559 - B3 SINE B2 -9 186 2 9 1720 769 173 50 7 chr6 148880672 148880812 -636225 + B1_Mus1 SINE Alu 3 148 0 9 1720 1294 34 0 7 chr6 148881063 148881211 -635826 + B1_Mm SINE Alu 1 147 0 9 1720 27 0 0 0 chr6 148881743 148881770 -635267 + AT_rich Low_complexity Low_complexity 1 27 0 9 1720 251 298 81 130 chr6 148882080 148882265 -634772 + RMER10A LTR ERVL 239 414 -28 9 1720 1214 80 6 39 chr6 148882435 148882617 -634420 + B2_Mm1a SINE B2 17 192 -1 9 1720 447 147 0 0 chr6 148882632 148882700 -634337 + B1F1 SINE Alu 9 76 -73 9 1720 293 238 102 8 chr6 148882872 148882999 -634038 + Lx5 LINE L1 6906 7044 -6 9 1720 387 241 24 87 chr6 148884895 148885022 -632015 + B3A SINE B2 66 184 -14 9 1720 633 246 158 27 chr6 148885096 148885280 -631757 + B3 SINE B2 9 216 0 9 1720 252 246 14 84 chr6 148885464 148885535 -631502 + ZP3AR Satellite Satellite 123 188 -24 9 1720 721 88 9 26 chr6 148885495 148885611 -631426 + BC1_Mm scRNA scRNA 1 114 -38 9 1720 2871 40 0 3 chr6 148885863 148886191 -630846 - L1Md_T LINE L1 0 6582 6256 9 1720 310 68 23 0 chr6 148886990 148887034 -630003 + B3A SINE B2 9 53 -145 9 1720 831 171 19 58 chr6 148887139 148887294 -629743 + B1_Mur3 SINE Alu 1 149 0 9 1720 311 333 19 0 chr6 148888497 148888605 -628432 - PB1D9 SINE Alu -2 118 9 9 1720 227 286 0 105 chr6 148888537 148888623 -628414 - ID_B1 SINE B4 -70 154 78 9 1720 461 254 55 21 chr6 148888617 148888762 -628275 - ID_B1 SINE B4 0 224 75 9 1720 517 200 6 143 chr6 148888840 148888871 -628166 - B2_Mm2 SINE B2 0 195 166 9 1720 1261 41 0 0 chr6 148888871 148889018 -628019 + B1_Mus2 SINE Alu 1 147 0 9 1720 517 200 6 143 chr6 148889018 148889161 -627876 - B2_Mm2 SINE B2 -30 165 45 9 1720 442 244 0 43 chr6 148889132 148889214 -627823 + B1_Mus1 SINE Alu 40 121 -27 9 1720 216 0 0 0 chr6 148889214 148889238 -627799 + (TG)n Simple_repeat Simple_repeat 2 25 0 9 1720 442 244 0 43 chr6 148889238 148889249 -627788 + B1_Mus1 SINE Alu 122 129 -19 9 1720 36 53 0 0 chr6 148889391 148889448 -627589 + AT_rich Low_complexity Low_complexity 1 57 0 9 1720 1091 222 0 5 chr6 148889453 148889661 -627376 + B3 SINE B2 3 209 -7 9 1720 254 220 51 0 chr6 148890616 148890675 -626362 - PB1D9 SINE Alu -5 115 54 9 1720 354 23 0 0 chr6 148890876 148890919 -626118 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 9 1720 1051 53 83 0 chr6 148890920 148891052 -625985 - B1_Mus2 SINE Alu -4 143 1 9 1720 469 281 30 53 chr6 148891057 148891226 -625811 - B3A SINE B2 0 198 34 9 1720 698 168 298 0 chr6 148891318 148891479 -625558 + B3 SINE B2 1 209 -7 9 1720 613 228 7 49 chr6 148891544 148891687 -625350 + B1_Mus1 SINE Alu 1 137 -11 9 1720 223 288 0 17 chr6 148891710 148891770 -625267 + ID2 SINE ID 5 63 -20 9 1720 27 0 0 0 chr6 148893285 148893312 -623725 + GC_rich Low_complexity Low_complexity 1 27 0 9 1720 31 0 0 0 chr6 148893569 148893600 -623437 + GC_rich Low_complexity Low_complexity 1 31 0 9 1720 180 111 0 0 chr6 148893958 148893985 -623052 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1720 21 36 0 0 chr6 148895124 148895152 -621885 + GC_rich Low_complexity Low_complexity 1 28 0 9 1720 1661 31 0 0 chr6 148896680 148896872 -620165 + B2_Mm1a SINE B2 2 193 0 9 1720 348 24 0 0 chr6 148896876 148896917 -620120 + (A)n Simple_repeat Simple_repeat 1 41 0 9 1720 1139 54 0 13 chr6 148896927 148897076 -619961 + B1_Mm SINE Alu 1 147 0 9 1720 763 197 0 28 chr6 148897295 148897436 -619601 + B1F2 SINE Alu 6 142 -7 9 1720 793 154 145 89 chr6 148897444 148897679 -619358 - MTB_Mm LTR MaLR -159 248 1 9 1720 327 25 0 0 chr6 148897731 148897771 -619266 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 9 26 927 128 15 0 chr6 148897771 148897904 -619133 - B1_Mus1 SINE Alu -13 135 1 9 1721 477 294 60 65 chr6 148897947 148898162 -618875 - B3A SINE B2 -1 215 2 9 1721 339 240 0 0 chr6 148898661 148898736 -618301 - RLTR24 LTR ERV1 -454 75 1 9 1721 460 85 571 8 chr6 148898937 148899056 -617981 + B2_Mm2 SINE B2 1 186 -9 9 1721 248 237 148 40 chr6 148899067 148899168 -617869 + B3 SINE B2 4 115 -101 9 1721 559 76 0 37 chr6 148899828 148899910 -617127 + MTC LTR MaLR 2 80 -341 9 1721 946 118 0 0 chr6 148899911 148900047 -616990 + B2_Mm2 SINE B2 2 137 -58 9 1721 662 56 0 0 chr6 148900045 148900135 -616902 + B1_Mus2 SINE Alu 58 147 0 9 1721 1944 148 41 12 chr6 148900148 148900490 -616547 + MTC LTR MaLR 68 419 -2 9 1721 579 267 0 0 chr6 148900662 148900778 -616259 + RSINE1 SINE B4 25 140 -25 9 1721 438 211 61 0 chr6 148900853 148900967 -616070 + L1M2 LINE L1 5678 5798 -493 9 1721 387 0 0 0 chr6 148900967 148901010 -616027 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 9 1721 1179 63 0 6 chr6 148901010 148901170 -615867 - B2_Mm1a SINE B2 -33 160 2 9 1721 1387 70 27 5 chr6 148901175 148901202 -615835 - B2_Mm1a SINE B2 -1 192 161 9 1721 243 0 0 0 chr6 148901202 148901229 -615808 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 9 1721 1387 70 27 5 chr6 148901229 148901388 -615649 - B2_Mm1a SINE B2 -33 160 2 9 1721 434 313 97 0 chr6 148901429 148901563 -615474 - RSINE1 SINE B4 0 165 19 9 1721 1181 48 7 0 chr6 148901602 148901747 -615290 + B1_Mm SINE Alu 1 146 -1 9 1721 724 32 11 0 chr6 148901758 148901853 -615184 - B1_Mus2 SINE Alu -1 146 51 9 1721 912 85 70 14 chr6 148901853 148901996 -615041 + L1Md_F2 LINE L1 6432 6582 0 9 1721 661 62 7 187 chr6 148901996 148902039 -614998 - B1_Mur4 SINE Alu -85 65 36 9 1721 1200 61 0 0 chr6 148902058 148902205 -614832 - B1_Mm SINE Alu 0 147 1 9 1721 221 293 0 0 chr6 148902227 148902285 -614752 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1721 360 0 0 0 chr6 148902285 148902325 -614712 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1721 1243 109 0 16 chr6 148902924 148903111 -613926 + B2_Mm2 SINE B2 3 186 -9 9 1721 186 179 0 0 chr6 148903227 148903249 -613788 + polypyrimidine Low_complexity Low_complexity 19 40 0 9 1721 1670 26 0 15 chr6 148903249 148903445 -613592 - B2_Mm1t SINE B2 0 193 1 9 1721 186 179 0 0 chr6 148903445 148903461 -613576 + polypyrimidine Low_complexity Low_complexity 3 18 0 9 1721 432 0 0 0 chr6 148903465 148903513 -613524 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 9 1721 1224 43 0 0 chr6 148903515 148903656 -613381 - B1_Mm SINE Alu -6 141 1 9 1721 1202 128 0 6 chr6 148903658 148903838 -613199 - B2_Mm2 SINE B2 -15 180 2 9 1721 938 235 14 5 chr6 148903997 148904211 -612826 + ID_B1 SINE B4 2 217 -7 9 1721 2402 132 57 7 chr6 148904674 148905093 -611944 + BGLII_B LTR ERVK 2 441 0 9 1721 475 268 0 0 chr6 148905327 148905424 -611613 + B1F SINE Alu 1 97 -52 9 1721 238 242 32 16 chr6 148905428 148905491 -611546 + ID_B1 SINE B4 136 199 -25 9 1721 416 193 0 24 chr6 148905465 148905550 -611487 + B1_Mur1 SINE Alu 67 149 0 9 1721 318 213 0 128 chr6 148905566 148905652 -611385 + ID4 SINE ID 9 83 0 9 1721 584 231 128 106 chr6 148905824 148906153 -610884 + RLTR12B LTR ERVK 151 486 -42 9 1721 360 216 149 5 chr6 148906811 148906962 -610075 - MLT2C1 LTR ERVL -217 197 21 9 1721 1132 151 0 10 chr6 148906962 148906981 -610056 - B2_Mm2 SINE B2 -3 192 174 9 1721 189 0 0 0 chr6 148906981 148907002 -610035 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 9 1721 1132 151 0 10 chr6 148907002 148907019 -610018 - B2_Mm2 SINE B2 -22 173 157 9 1721 417 86 0 0 chr6 148907019 148907077 -609960 + (TA)n Simple_repeat Simple_repeat 2 59 0 9 1721 1132 151 0 10 chr6 148907077 148907233 -609804 - B2_Mm2 SINE B2 -39 156 2 9 1721 940 107 68 45 chr6 148907311 148907487 -609550 + B2_Mm2 SINE B2 2 181 -14 9 1721 189 0 0 0 chr6 148907492 148907513 -609524 + (GA)n Simple_repeat Simple_repeat 2 22 0 9 1721 408 250 8 65 chr6 148907517 148907641 -609396 + B3A SINE B2 27 143 -55 9 1721 228 35 0 0 chr6 148907645 148907674 -609363 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1721 580 84 3 0 chr6 148908032 148908127 -608910 + B1_Mus2 SINE Alu 53 149 0 9 1721 218 176 59 0 chr6 148908916 148908967 -608070 + PB1D10 SINE Alu 64 117 0 9 1721 607 272 68 0 chr6 148909320 148909467 -607570 - RSINE1 SINE B4 -6 159 3 9 1721 415 259 98 0 chr6 148909785 148909897 -607140 - B1F SINE Alu -9 140 18 9 1721 207 0 0 0 chr6 148909898 148909921 -607116 + (CCA)n Simple_repeat Simple_repeat 3 25 0 9 1721 294 289 25 29 chr6 148910302 148910424 -606613 + PB1D9 SINE Alu 6 117 -3 9 1721 585 76 0 0 chr6 148910458 148910537 -606500 + (TC)n Simple_repeat Simple_repeat 2 80 0 9 1721 1184 62 7 0 chr6 148910540 148910686 -606351 - B1_Mm SINE Alu 0 147 1 9 1721 225 0 0 0 chr6 148910686 148910711 -606326 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1721 1629 42 5 0 chr6 148910737 148910929 -606108 - B2_Mm1t SINE B2 0 193 1 9 1721 280 0 57 57 chr6 148911320 148911373 -605664 + Lx6 LINE L1 7402 7454 -6 9 1721 1013 124 0 0 chr6 148911379 148911532 -605505 + B2_Mm2 SINE B2 1 153 -42 1 1721 297 0 0 0 chr6 148911532 148911565 -605472 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1721 204 97 0 0 chr6 148911585 148911616 -605421 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1721 387 269 28 28 chr6 148911900 148912007 -605030 + PB1D10 SINE Alu 10 116 -1 1 1721 890 180 102 15 chr6 148912015 148912212 -604825 + ID_B1 SINE B4 10 223 -1 1 1721 216 217 183 0 chr6 148912478 148912538 -604499 + ID4_ SINE ID 2 72 -11 1 1721 1077 83 0 0 chr6 148912758 148912891 -604146 + B1_Mus2 SINE Alu 2 134 -13 1 1721 324 0 0 0 chr6 148912891 148912927 -604110 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1721 257 219 28 117 chr6 148912938 148913063 -603974 + PB1D9 SINE Alu 13 127 -22 1 1721 1344 95 11 11 chr6 148913247 148913438 -603599 - B2_Mm2 SINE B2 -4 191 1 1 1721 2077 222 145 8 chr6 148913461 148913992 -603045 - Lx6 LINE L1 -69 7391 6788 1 1721 1165 196 191 51 chr6 148914093 148914465 -602572 + RMER2 LTR ERV1 1 424 -143 1 1721 361 292 10 10 chr6 148914831 148914928 -602109 - ID_B1 SINE B4 -5 219 123 1 1721 2724 139 30 14 chr6 148914965 148915474 -601563 + RMER6A LTR ERVK 240 756 0 1 1721 302 337 95 0 chr6 148915512 148915607 -601430 + B3A SINE B2 65 168 -30 1 1721 478 152 29 115 chr6 148915662 148915766 -601271 + PB1D9 SINE Alu 6 100 -20 1 1721 423 0 0 0 chr6 148915770 148915817 -601220 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1721 1252 48 0 0 chr6 148916071 148916218 -600819 + B1_Mus1 SINE Alu 2 148 0 1 1721 21 0 0 0 chr6 148916363 148916384 -600653 + AT_rich Low_complexity Low_complexity 1 21 0 1 1721 510 359 23 15 chr6 148916395 148916661 -600376 - MER58B DNA MER1_type -68 273 6 1 1721 527 60 0 35 chr6 148916752 148916839 -600198 + L1Md_F2 LINE L1 6499 6582 0 1 1721 2318 92 3 58 chr6 148916853 148917140 -599897 + ORR1A2 LTR MaLR 1 287 -40 1 1721 1580 43 21 0 chr6 148917140 148917328 -599709 + B2_Mm1a SINE B2 2 193 0 1 1721 2318 92 3 58 chr6 148917328 148917386 -599651 + ORR1A2 LTR MaLR 288 327 0 1 1721 317 106 0 0 chr6 148917591 148917638 -599399 - B2_Mm2 SINE B2 -147 48 2 1 1721 34 0 0 0 chr6 148917722 148917756 -599281 + AT_rich Low_complexity Low_complexity 1 34 0 1 1721 465 202 11 0 chr6 148917774 148917868 -599169 + B1_Mur3 SINE Alu 53 147 -2 1 1721 885 168 0 45 chr6 148917883 148918039 -598998 - B1_Mur2 SINE Alu 0 149 1 1 1721 494 257 42 24 chr6 148918045 148918219 -598818 - B3 SINE B2 0 195 24 1 1721 420 298 220 0 chr6 148918224 148918392 -598645 - ID_B1 SINE B4 -19 205 1 1 1721 273 262 47 0 chr6 148918848 148918955 -598082 + BC1_Mm scRNA scRNA 22 133 -19 1 1721 414 226 109 34 chr6 148918968 148919087 -597950 + B1F SINE Alu 20 147 -2 1 1721 1191 61 7 0 chr6 148919123 148919270 -597767 + B1_Mus1 SINE Alu 1 148 0 1 1721 1341 87 21 5 chr6 148919532 148919718 -597319 - B2_Mm2 SINE B2 -5 190 2 1 1721 180 0 0 0 chr6 148920124 148920144 -596893 + (CAGGC)n Simple_repeat Simple_repeat 1 20 0 1 1721 285 325 33 61 chr6 148920807 148921020 -596017 - MLT1F2 LTR MaLR -329 231 25 1 1721 29 0 0 0 chr6 148921073 148921102 -595935 + AT_rich Low_complexity Low_complexity 1 29 0 1 1721 753 109 130 15 chr6 148921159 148921290 -595747 + B1_Mur4 SINE Alu 5 150 0 1 1721 252 0 0 0 chr6 148921378 148921406 -595631 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1721 1539 145 0 22 chr6 148921409 148921684 -595353 - RMER6A LTR ERVK 0 756 488 1 1721 22 0 0 0 chr6 148921719 148921741 -595296 + AT_rich Low_complexity Low_complexity 1 22 0 1 1721 211 175 50 0 chr6 148921803 148921843 -595194 + B1F2 SINE Alu 5 46 -103 1 1721 321 96 0 0 chr6 148921968 148921994 -595043 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1721 1184 82 0 0 chr6 148921994 148922141 -594896 + B1_Mus1 SINE Alu 2 148 0 1 1721 321 96 0 0 chr6 148922141 148922166 -594871 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1721 299 203 62 0 chr6 148922179 148922243 -594794 - ID SINE ID -156 68 1 1 1721 316 300 26 52 chr6 148922243 148922344 -594693 - B1F2 SINE Alu -49 100 3 1 1721 418 221 0 0 chr6 148922706 148922783 -594254 + RMER1B Other Other 1 77 -989 1 1721 3208 98 25 49 chr6 148922783 148922964 -594073 - RLTR19B LTR ERVK 0 715 538 1 1721 1207 48 0 7 chr6 148922964 148923111 -593926 + B1_Mm SINE Alu 1 146 -1 1 1721 3208 98 25 49 chr6 148923111 148923456 -593581 - RLTR19B LTR ERVK -178 537 202 1 1721 216 0 0 0 chr6 148923456 148923480 -593557 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1 1721 294 50 0 0 chr6 148923493 148923533 -593504 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 1 1721 1173 75 0 0 chr6 148923534 148923680 -593357 - B1_Mus2 SINE Alu 0 147 2 1 1721 5019 196 44 78 chr6 148923684 148925198 -591839 + RMER1A Other Other 1 1030 0 1 1721 258 105 0 0 chr6 148925336 148925374 -591663 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1721 822 188 0 0 chr6 148925495 148925633 -591404 - B1_Mus2 SINE Alu -6 141 4 1 1721 6101 220 102 12 chr6 148926064 148927625 -589412 - Lx9 LINE L1 0 7644 5826 1 1721 1200 131 0 0 chr6 148927627 148927803 -589234 + B2_Mm2 SINE B2 1 176 -19 1 1721 827 143 0 15 chr6 148928414 148928549 -588488 - B1_Mus1 SINE Alu -14 134 2 1 1721 324 70 0 0 chr6 148928599 148928642 -588395 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1 1721 398 226 33 50 chr6 148928714 148928835 -588202 + L1M5 LINE L1 5592 5710 -414 1 1721 272 45 0 64 chr6 148929249 148929296 -587741 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1721 1659 11 16 0 chr6 148929312 148929497 -587540 - B2_Mm1a SINE B2 -4 189 2 1 1721 1628 57 0 0 chr6 148929791 148929983 -587054 - B2_Mm1a SINE B2 0 193 2 1 1721 256 307 0 13 chr6 148930139 148930215 -586822 + ID4 SINE ID 3 77 -6 1 1721 1191 48 7 0 chr6 148930352 148930497 -586540 - B1_Mm SINE Alu -1 146 1 1 1721 374 258 295 13 chr6 148930562 148930786 -586251 - B4A SINE B4 -4 288 2 1 1721 371 239 165 0 chr6 148930818 148930927 -586110 - B1F SINE Alu -18 131 5 1 1721 535 278 6 40 chr6 148930940 148931116 -585921 - B3A SINE B2 -4 194 25 1 1721 1128 43 50 0 chr6 148931600 148931741 -585296 - B1_Mus1 SINE Alu 0 148 1 1 1721 287 265 101 10 chr6 148931869 148931968 -585069 + PB1 SINE Alu 1 108 -19 1 1721 2048 126 59 72 chr6 148931998 148932280 -584757 + RMER10A LTR ERVL 3 296 -146 1 1721 2023 133 11 108 chr6 148932280 148932734 -584303 + RMER17C LTR ERVK 1 410 0 1 1721 2048 126 59 72 chr6 148932734 148932895 -584142 + RMER10A LTR ERVL 297 440 -2 1 1721 753 139 69 49 chr6 148932947 148933091 -583946 + B1_Mur2 SINE Alu 3 149 0 1 1721 587 262 35 7 chr6 148933110 148933252 -583785 + RSINE1 SINE B4 16 161 -4 1 1721 588 191 17 17 chr6 148933379 148933555 -583482 + CT-rich Low_complexity Low_complexity 2 177 0 1 1721 755 77 0 0 chr6 148933556 148933660 -583377 - B1_Mus2 SINE Alu 0 147 44 1 1721 814 260 9 33 chr6 148933891 148934102 -582935 + B3 SINE B2 3 208 -8 1 1721 1006 60 83 0 chr6 148934112 148934245 -582792 + B1_Mus1 SINE Alu 3 146 -2 1 1721 513 47 0 0 chr6 148934250 148934314 -582723 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 1 1721 646 169 16 24 chr6 148934333 148934460 -582577 + B1_Mur1 SINE Alu 23 148 -1 1 1721 210 241 19 0 chr6 148935126 148935180 -581857 + RSINE1 SINE B4 43 97 -68 1 1721 1247 48 0 0 chr6 148935236 148935383 -581654 - B1_Mm SINE Alu 0 147 1 1 1721 354 258 32 0 chr6 148935430 148935523 -581514 + MLT2B4 LTR ERVL 1 96 -460 1 1721 519 229 101 58 chr6 148935527 148935666 -581371 - B1_Mur1 SINE Alu 0 150 6 1 1721 321 304 0 0 chr6 148935699 148935768 -581269 + ID4_ SINE ID 6 74 -9 1 1721 1205 61 0 0 chr6 148936000 148936148 -580889 - B1_Mus1 SINE Alu 0 148 1 1 1721 1378 88 10 5 chr6 148936156 148936350 -580687 - B2_Mm2 SINE B2 0 195 1 1 1721 1204 48 0 7 chr6 148936370 148936518 -580519 - B1_Mm SINE Alu 0 147 1 1 1721 963 100 25 104 chr6 148937481 148937682 -579355 + B2_Mm2 SINE B2 3 187 -8 1 1721 770 182 34 27 chr6 148937724 148937871 -579166 + B1_Mur3 SINE Alu 2 149 0 1 1721 21 0 0 0 chr6 148938320 148938341 -578696 + AT_rich Low_complexity Low_complexity 1 21 0 1 1721 1710 26 0 0 chr6 148938595 148938787 -578250 - B2_Mm1a SINE B2 0 193 2 1 1721 423 211 0 0 chr6 148938954 148939025 -578012 - ID2 SINE ID -10 73 3 1 1721 909 194 41 0 chr6 148939057 148939253 -577784 - B3 SINE B2 -6 210 7 1 1721 387 170 65 67 chr6 148939948 148940058 -576979 + B1_Mur1 SINE Alu 27 149 0 1 1721 432 0 0 0 chr6 148941443 148941491 -575546 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1721 459 174 122 0 chr6 148941492 148941590 -575447 - PB1D9 SINE Alu -10 110 1 1 1721 1433 75 37 0 chr6 148942621 148942808 -574229 - B2_Mm2 SINE B2 -1 194 1 1 1721 316 91 0 0 chr6 148942831 148942875 -574162 - B2_Mm2 SINE B2 -150 45 2 1 1721 201 147 0 0 chr6 148943617 148943651 -573386 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1721 29 28 0 0 chr6 148943907 148943943 -573094 + AT_rich Low_complexity Low_complexity 1 36 0 1 1721 345 244 0 13 chr6 148943943 148944022 -573015 - ID4_ SINE ID -1 82 5 1 1721 457 218 5 42 chr6 148944056 148944157 -572880 + RSINE1 SINE B4 3 98 -194 1 1721 1381 58 20 35 chr6 148944157 148944355 -572682 - B2_Mm2 SINE B2 0 195 1 1 1721 436 290 27 164 chr6 148944355 148944509 -572528 + B4 SINE B4 99 223 -69 1 1721 875 77 8 0 chr6 148944394 148944511 -572526 + B1_Mus1 SINE Alu 31 148 0 1 1721 844 171 2 17 chr6 148944634 148944787 -572250 + B1_Mm SINE Alu 1 147 0 1 1721 414 220 202 0 chr6 148944807 148944916 -572121 + B1_Mur2 SINE Alu 10 140 -9 1 1721 247 306 14 0 chr6 148945134 148945206 -571831 - ID4 SINE ID -9 74 2 1 1721 396 263 60 17 chr6 148945217 148945333 -571704 - B1_Mur1 SINE Alu -8 141 21 1 1721 404 171 87 13 chr6 148945436 148945576 -571461 + B3A SINE B2 2 196 -20 1 1721 180 219 0 0 chr6 148945576 148945617 -571420 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 1721 690 188 20 34 chr6 148945619 148945768 -571269 - B1_Mur3 SINE Alu -1 148 2 1 1721 1122 97 0 0 chr6 148945807 148945952 -571085 + B1_Mus1 SINE Alu 2 146 -2 1 1721 1182 111 10 55 chr6 148945959 148946129 -570908 + B2_Mm1t SINE B2 1 165 -28 1 1721 1480 39 38 11 chr6 148946129 148946312 -570725 - B2_Mm2 SINE B2 -7 188 1 1 1721 1182 111 10 55 chr6 148946312 148946341 -570696 + B2_Mm1t SINE B2 166 191 -2 1 1721 204 67 0 0 chr6 148946349 148946379 -570658 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 1 1721 1000 99 80 80 chr6 148946422 148946609 -570428 + B2_Mm2 SINE B2 1 187 -8 1 1721 258 143 0 0 chr6 148947273 148947322 -569715 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1721 198 80 39 20 chr6 148947719 148947770 -569267 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 1 1721 754 223 55 69 chr6 148947816 148948033 -569004 - B3 SINE B2 -2 214 1 1 1721 400 208 0 0 chr6 148948061 148948138 -568899 - RSINE1 SINE B4 -33 132 56 1 1721 871 151 43 0 chr6 148948197 148948336 -568701 - B1_Mur4 SINE Alu 0 150 6 1 1721 967 208 35 0 chr6 148948637 148948839 -568198 + B3 SINE B2 2 210 -6 1 1721 657 165 99 0 chr6 148948949 148949070 -567967 + B1_Mur4 SINE Alu 1 133 -17 1 1721 271 60 20 20 chr6 148949489 148949540 -567497 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 1 1721 1846 167 21 34 chr6 148949838 148950216 -566821 + ORR1D1 LTR MaLR 2 374 0 1 1721 516 344 61 0 chr6 148950251 148950414 -566623 - ID_B1 SINE B4 -3 221 49 1 1721 655 222 7 14 chr6 148950449 148950595 -566442 + ORR1C2 LTR MaLR 1 145 -229 1 1721 432 0 0 0 chr6 148950596 148950644 -566393 + (TATG)n Simple_repeat Simple_repeat 4 51 0 1 1721 871 213 0 13 chr6 148950648 148950805 -566232 - B3 SINE B2 -61 155 1 1 1721 868 199 127 79 chr6 148950808 148950963 -566074 + ORR1C2 LTR MaLR 145 324 -60 1 1721 756 206 14 0 chr6 148950963 148951109 -565928 - B1_Mus1 SINE Alu 0 148 1 1 1721 868 199 127 79 chr6 148951109 148951182 -565855 + ORR1C2 LTR MaLR 325 384 0 1 1721 450 187 115 115 chr6 148951286 148951425 -565612 + B1_Mur1 SINE Alu 2 140 -9 1 1721 194 156 0 22 chr6 148951425 148951471 -565566 + (CAAAG)n Simple_repeat Simple_repeat 5 49 0 1 1721 400 267 0 0 chr6 148951490 148951565 -565472 + B3A SINE B2 88 162 -36 1 1721 222 37 0 0 chr6 148951570 148951597 -565440 + (CAAAT)n Simple_repeat Simple_repeat 4 30 0 1 1721 734 206 29 0 chr6 148951686 148951822 -565215 + B1_Mur1 SINE Alu 2 141 -8 1 1721 408 40 0 0 chr6 148951837 148951887 -565150 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1721 387 195 64 13 chr6 148951923 148952001 -565036 - B4A SINE B4 -71 221 140 1 1721 437 253 12 0 chr6 148952013 148952096 -564941 - B4A SINE B4 -203 89 6 1 1721 191 88 29 0 chr6 148952171 148952205 -564832 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1 1721 1155 104 6 0 chr6 148952212 148952375 -564662 - B2_Mm2 SINE B2 -30 165 2 1 1721 21 0 0 0 chr6 148952380 148952401 -564636 + AT_rich Low_complexity Low_complexity 1 21 0 1 1721 1528 57 0 10 chr6 148952884 148953078 -563959 + B2_Mm1a SINE B2 2 193 0 1 1721 210 143 0 0 chr6 148953081 148953116 -563921 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1721 450 127 0 0 chr6 148953130 148953201 -563836 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1721 763 249 43 12 chr6 148953215 148953378 -563659 - B3A SINE B2 -27 171 4 1 1721 521 283 53 53 chr6 148953380 148953589 -563448 - B4A SINE B4 -83 209 1 1 1721 451 257 6 63 chr6 148954002 148954160 -562877 - B1F SINE Alu 0 149 1 1 1721 304 324 69 95 chr6 148954255 148954283 -562754 + B4 SINE B4 67 91 -201 1 1721 490 270 28 8 chr6 148954283 148954420 -562617 + B1_Mur3 SINE Alu 3 147 -2 1 1721 1092 49 35 0 chr6 148954432 148954574 -562463 - B1_Mus1 SINE Alu 0 148 2 1 1721 524 244 268 0 chr6 148954584 148954752 -562285 - B3 SINE B2 -3 213 1 1 1721 548 319 7 34 chr6 148954779 148954928 -562109 - B3A SINE B2 -2 196 52 1 1721 755 146 8 16 chr6 148954965 148955090 -561947 - B1_Mur3 SINE Alu -25 124 1 1 1721 357 179 42 109 chr6 148954983 148955102 -561935 - MT2B LTR ERVL -343 258 148 1 1721 216 274 0 0 chr6 148955801 148955852 -561185 + ID4_ SINE ID 6 56 -27 1 1721 348 287 32 0 chr6 148955887 148955981 -561056 - Tigger7 DNA MER2_type -7 2484 2388 1 1721 285 191 124 56 chr6 148955956 148956045 -560992 - Tigger7 DNA MER2_type -1437 1054 960 1 1721 931 272 44 4 chr6 148956042 148956271 -560766 - Tigger7 DNA MER2_type -2143 348 111 1 1721 327 312 0 0 chr6 148956293 148956373 -560664 + ID4 SINE ID 2 81 -2 1 1721 316 281 111 30 chr6 148956414 148956513 -560524 - PB1D9 SINE Alu 0 120 14 1 1721 683 270 4 0 chr6 148956535 148956683 -560354 - ID_B1 SINE B4 -1 223 79 1 1721 309 301 11 46 chr6 148956685 148956772 -560265 - Tigger7 DNA MER2_type -2394 97 14 1 1721 1707 16 0 0 chr6 148956886 148957077 -559960 + B2_Mm1a SINE B2 1 191 -2 1 1721 228 100 0 0 chr6 148957203 148957243 -559794 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1721 1327 85 10 21 chr6 148957326 148957518 -559519 - B2_Mm1t SINE B2 -2 191 2 1 1721 947 106 43 0 chr6 148957786 148957927 -559110 + B1_Mus2 SINE Alu 1 147 0 1 1721 248 329 57 0 chr6 148958006 148958076 -558961 - L2b LINE L2 -12 3363 3290 1 1721 998 194 23 36 chr6 148958500 148958719 -558318 - B3 SINE B2 0 216 1 1 1721 230 29 0 56 chr6 148958742 148958778 -558259 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1721 943 94 62 41 chr6 148958784 148958929 -558108 - B1_Mus1 SINE Alu 0 148 1 1 1721 1300 101 17 0 chr6 148958946 148959124 -557913 - B2_Mm2 SINE B2 -14 181 1 1 1721 757 134 97 6 chr6 148959140 148959276 -557761 - B1_Mur3 SINE Alu -7 142 2 1 1721 522 204 10 20 chr6 148959299 148959399 -557638 + RSINE1 SINE B4 3 101 -64 1 1721 626 245 12 37 chr6 148959558 148959719 -557318 - MTD LTR MaLR -149 270 114 1 1721 22 0 0 0 chr6 148959719 148959741 -557296 + AT_rich Low_complexity Low_complexity 1 22 0 1 1721 500 176 0 10 chr6 148959745 148959848 -557189 + GA-rich Low_complexity Low_complexity 2 103 0 1 1721 253 299 15 0 chr6 148959864 148959931 -557106 - MTD LTR MaLR -298 121 54 1 1721 180 0 0 0 chr6 148959931 148959951 -557086 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1721 1189 75 0 0 chr6 148959970 148960117 -556920 - B1_Mus1 SINE Alu 0 148 2 1 1721 404 225 286 6 chr6 148960172 148960333 -556704 + MTD LTR MaLR 214 419 0 1 1721 240 222 127 0 chr6 148960503 148960566 -556471 - ID_B1 SINE B4 -4 220 150 1 1721 507 291 98 33 chr6 148960632 148960785 -556252 - RSINE1 SINE B4 -1 164 2 1 1721 959 48 111 0 chr6 148960850 148960976 -556061 - B1_Mus1 SINE Alu -8 140 1 1 1721 401 208 137 84 chr6 148960982 148961051 -555986 - ID_B1 SINE B4 -71 153 78 1 1721 203 0 0 36 chr6 148961051 148961079 -555958 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1721 401 208 137 84 chr6 148961079 148961140 -555897 - ID SINE ID -147 77 16 1 1721 1407 57 29 0 chr6 148961516 148961691 -555346 + B2_Mm2 SINE B2 1 180 -15 1 1721 195 42 0 0 chr6 148961693 148961717 -555320 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1 1721 357 303 351 28 chr6 148961769 148962087 -554950 - LTR16A LTR ERVL -2 449 29 1 1721 1361 74 29 0 chr6 148962138 148962313 -554724 + B2_Mm2 SINE B2 2 181 -14 1 1721 237 148 0 69 chr6 148962359 148962417 -554620 + B2_Mm2 SINE B2 137 190 -5 1 1721 550 161 11 0 chr6 148962822 148962915 -554122 - BC1_Mm scRNA scRNA -58 94 1 1 1721 1357 69 34 0 chr6 148962945 148963120 -553917 + B2_Mm2 SINE B2 1 181 -14 1 1721 200 35 35 0 chr6 148963207 148963236 -553801 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 1 1721 755 256 65 0 chr6 148963262 148963430 -553607 + B3 SINE B2 31 209 -7 1 1721 555 297 14 129 chr6 148963410 148963619 -553418 - B4A SINE B4 -107 185 1 1 1721 780 284 45 58 chr6 148963621 148963676 -553361 - ID_B1 SINE B4 -2 222 169 1 1721 2783 131 37 24 chr6 148963676 148964131 -552906 - RMER6B LTR ERVK 0 461 1 1 1721 780 284 45 58 chr6 148964131 148964299 -552738 - ID_B1 SINE B4 -56 168 2 1 1721 762 199 20 20 chr6 148964348 148964497 -552540 + B1_Mur2 SINE Alu 1 149 0 1 1721 265 258 25 0 chr6 148964690 148964810 -552227 + ORR1B1-int LTR MaLR 632 754 -755 1 1721 964 113 14 27 chr6 148964708 148964854 -552183 + B1_Mur3 SINE Alu 6 149 0 1 1721 767 191 0 33 chr6 148964930 148965082 -551955 - B1_Mur3 SINE Alu -2 147 1 1 1721 310 313 0 0 chr6 148966075 148966158 -550879 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1721 602 195 76 30 chr6 148966200 148966332 -550705 - B1_Mus1 SINE Alu 0 148 11 1 1721 665 186 96 8 chr6 148966382 148966507 -550530 - B1_Mus1 SINE Alu -6 142 7 1 1721 604 131 194 16 chr6 148966557 148966681 -550356 + B1_Mus1 SINE Alu 2 147 -1 1 1721 592 304 8 130 chr6 148966946 148967133 -549904 + B3 SINE B2 1 165 -51 1 1721 1995 174 113 51 chr6 148967133 148967683 -549354 + RLTR31A_Mm LTR ERVK 1 584 0 1 1721 592 304 8 130 chr6 148967683 148967741 -549296 + B3 SINE B2 166 216 0 1 1721 26 0 0 0 chr6 148967741 148967767 -549270 + AT_rich Low_complexity Low_complexity 1 26 0 1 1721 540 266 0 0 chr6 148968006 148968119 -548918 - PB1D9 SINE Alu 0 120 8 1 1721 922 137 116 54 chr6 148968119 148968249 -548788 - Lx9 LINE L1 -13 7631 7488 1 1721 1190 128 17 0 chr6 148968249 148968429 -548608 - B2_Mm2 SINE B2 -11 184 2 1 1721 922 137 116 54 chr6 148968429 148968522 -548515 - Lx9 LINE L1 -157 7487 7395 1 1721 601 264 8 0 chr6 148968692 148968813 -548224 + RSINE1 SINE B4 11 132 -33 1 1721 1136 62 0 7 chr6 148969569 148969714 -547323 + B1_Mm SINE Alu 4 147 0 1 1721 508 143 59 51 chr6 148970179 148970297 -546740 + RLTR14-int LTR ERV1 948 1066 -4251 1 1721 3651 141 34 44 chr6 148970294 148970782 -546255 + RLTR14-int LTR ERV1 1180 1680 -3637 1 1721 443 56 42 0 chr6 148970782 148970854 -546183 - L1Md_F2 LINE L1 0 6582 6508 1 1721 3651 141 34 44 chr6 148970854 148971046 -545991 + RLTR14-int LTR ERV1 1681 1853 -3464 1 1721 1517 131 0 4 chr6 148971047 148971278 -545759 + MTB_Mm LTR MaLR 178 407 0 1 1721 1044 168 15 20 chr6 148971278 148971479 -545558 + RLTR14-int LTR ERV1 1850 2049 -3268 1 1721 643 167 27 61 chr6 148971550 148971697 -545340 + RLTR14-int LTR ERV1 2036 2177 -3140 1 1721 1169 56 14 0 chr6 148971739 148971882 -545155 + B1_Mus1 SINE Alu 4 148 0 1 1721 1300 182 35 31 chr6 148971917 148972206 -544831 + RLTR14-int LTR ERV1 2182 2471 -2846 1 1721 192 143 0 0 chr6 148972283 148972325 -544712 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1721 3332 174 20 23 chr6 148972348 148973003 -544034 + RLTR14-int LTR ERV1 3675 4327 -990 1 1721 3725 118 112 59 chr6 148973014 148973405 -543632 + RLTR14-int LTR ERV1 4410 4805 -512 1 1721 718 188 65 0 chr6 148973405 148973543 -543494 - B1_Mur4 SINE Alu -1 149 3 1 1721 3725 122 243 52 chr6 148973543 148973959 -543078 + RLTR14-int LTR ERV1 4806 5317 0 1 1721 1850 127 66 102 chr6 148973964 148974207 -542830 + RLTR14 LTR ERV1 1 247 -135 1 1721 839 150 30 0 chr6 148974207 148974340 -542697 + B1_Mur4 SINE Alu 1 137 -13 1 1721 1850 127 66 102 chr6 148974340 148974490 -542547 + RLTR14 LTR ERV1 248 380 -2 1 1721 646 181 42 10 chr6 148974595 148974750 -542287 - RLTR19B LTR ERVK 0 715 602 1 1721 192 172 17 33 chr6 148974766 148974826 -542211 + CT-rich Low_complexity Low_complexity 2 60 0 1 1721 1469 34 62 0 chr6 148974827 148975004 -542033 - B2_Mm1a SINE B2 -5 188 1 1 1721 561 218 129 0 chr6 148975014 148975138 -541899 - B1_Mur2 SINE Alu -8 141 2 1 1721 313 234 31 0 chr6 148975227 148975291 -541746 - RSINE1 SINE B4 -32 133 68 1 1721 560 42 168 112 chr6 148975375 148975482 -541555 - B1_Mus1 SINE Alu -8 140 28 1 1721 578 161 175 16 chr6 148975493 148975619 -541418 - B1_Mus1 SINE Alu 0 148 3 1 1721 642 176 0 0 chr6 148975624 148975726 -541311 - PB1D9 SINE Alu -1 119 18 1 1721 319 203 0 115 chr6 148975658 148975736 -541301 - MT2B LTR ERVL -361 240 172 1 1721 267 114 0 0 chr6 148976405 148976449 -540588 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 1 1721 430 236 107 18 chr6 148976906 148977018 -540019 + B4A SINE B4 2 123 -169 1 1721 369 0 0 0 chr6 148977152 148977193 -539844 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1721 1086 211 29 5 chr6 148977304 148977514 -539523 + B3 SINE B2 2 216 0 1 1721 216 0 0 0 chr6 148978077 148978101 -538936 + (CTAGT)n Simple_repeat Simple_repeat 4 27 0 1 1721 333 0 0 0 chr6 148978482 148978519 -538518 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1721 713 315 35 0 chr6 148978580 148978780 -538257 + ID_B1 SINE B4 9 215 -9 1 1721 262 250 83 0 chr6 148979651 148979723 -537314 + ID4 SINE ID 5 82 -1 1 1721 651 278 17 29 chr6 148979735 148979901 -537136 + B3A SINE B2 1 165 -33 1 1721 441 76 0 0 chr6 148979901 148979967 -537070 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1721 367 230 118 20 chr6 148979978 148980080 -536957 + PB1D9 SINE Alu 1 112 -8 1 1721 256 385 112 6 chr6 148980307 148980477 -536560 + MIR3 SINE MIR 10 197 -11 1 1721 251 152 34 0 chr6 148980667 148980726 -536311 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 1 1721 336 127 0 0 chr6 148981052 148981107 -535930 + (GAAAA)n Simple_repeat Simple_repeat 5 59 0 1 1721 22 56 0 0 chr6 148981353 148981389 -535648 + AT_rich Low_complexity Low_complexity 1 36 0 1 1721 273 197 29 43 chr6 148982022 148982091 -534946 - PB1D10 SINE Alu -2 115 48 1 1721 620 263 35 75 chr6 148982383 148982712 -534325 - RLTR4_MM-int LTR ERV1 -5363 2415 1974 1 1721 518 299 8 8 chr6 148982848 148982966 -534071 + ID_B1 SINE B4 17 134 -90 1 1721 262 276 0 49 chr6 148982919 148982980 -534057 + PB1D10 SINE Alu 7 64 -53 1 1721 200 233 0 0 chr6 148983018 148983061 -533976 + A-rich Low_complexity Low_complexity 1 43 0 1 1721 975 110 78 12 chr6 148983061 148983227 -533810 + B2_Mm1a SINE B2 3 179 -14 1 1721 189 0 0 0 chr6 148983235 148983256 -533781 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1721 455 200 20 59 chr6 148983259 148983360 -533677 + B1_Mur4 SINE Alu 1 97 -53 1 1721 8251 63 51 10 chr6 148983360 148984582 -532455 + Lx3_Mus LINE L1 5734 7005 -4 1 1721 25 0 0 0 chr6 148985059 148985084 -531953 + AT_rich Low_complexity Low_complexity 1 25 0 1 1721 838 133 0 23 chr6 148985175 148985306 -531731 - B1_Mur2 SINE Alu 0 149 22 1 1721 816 85 34 8 chr6 148986218 148986336 -530701 - B1_Mur1 SINE Alu -6 143 23 1 1721 890 102 66 0 chr6 148986461 148986598 -530439 - B1_Mus2 SINE Alu 0 147 2 1 1721 284 318 19 9 chr6 148987491 148987599 -529438 + PB1D10 SINE Alu 1 109 -8 1 1721 474 18 0 0 chr6 148987658 148987713 -529324 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1721 307 333 101 39 chr6 148988453 148988631 -528406 + MIRb SINE MIR 74 262 -6 1 1721 449 216 17 35 chr6 148988845 148988960 -528077 - PB1D10 SINE Alu 0 117 5 1 1721 770 185 30 8 chr6 148989256 148989387 -527650 + B1_Mur4 SINE Alu 7 140 -10 1 1721 21 0 0 0 chr6 148991761 148991782 -525255 + AT_rich Low_complexity Low_complexity 1 21 0 1 1721 51 0 0 0 chr6 148992481 148992532 -524505 + AT_rich Low_complexity Low_complexity 1 51 0 1 1721 502 182 81 0 chr6 148992609 148992708 -524329 - ID_B1 SINE B4 0 224 118 1 1721 228 67 0 0 chr6 148992762 148992792 -524245 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1721 429 150 0 0 chr6 148992813 148992893 -524144 + Lx3C LINE L1 6894 6973 -3 1 1721 594 249 187 4 chr6 148993592 148993822 -523215 + RMER5 LTR ERV1 48 319 -215 1 1721 781 183 42 0 chr6 148993846 148993988 -523049 + B1_Mur2 SINE Alu 1 148 -1 1 1721 25 31 0 0 chr6 148993989 148994021 -523016 + AT_rich Low_complexity Low_complexity 1 32 0 1 1721 765 88 8 50 chr6 148994041 148994161 -522876 + B1_Mus2 SINE Alu 32 146 -1 1 1721 966 219 35 25 chr6 148994214 148994415 -522622 + B3 SINE B2 1 203 -13 1 1721 22 35 0 0 chr6 148994443 148994472 -522565 + AT_rich Low_complexity Low_complexity 1 29 0 1 1721 1294 207 141 126 chr6 148994744 148995269 -521768 + MT2A LTR ERVL 1 533 0 1 1721 606 245 29 7 chr6 148995792 148995932 -521105 - ID_B1 SINE B4 -1 223 81 1 1721 203 147 0 0 chr6 148996067 148996101 -520936 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1721 1381 221 67 16 chr6 148996115 148996551 -520486 - L1MA4 LINE L1 -364 5936 5479 1 1721 360 277 118 0 chr6 148996552 148996671 -520366 - ID_B1 SINE B4 0 224 92 1 1721 2051 140 78 40 chr6 148996718 148997044 -519993 + ORR1B1 LTR MaLR 1 348 -46 1 1721 1424 79 11 0 chr6 148997044 148997233 -519804 + B2_Mm1t SINE B2 1 191 -2 1 1721 2051 140 78 40 chr6 148997233 148997278 -519759 + ORR1B1 LTR MaLR 349 386 -8 1 1721 223 196 246 18 chr6 148997342 148997399 -519638 - ID SINE ID -151 73 4 1 1721 649 181 9 5 chr6 148997897 148998020 -519017 - PB1D9 SINE Alu -1 119 1 1 1721 306 0 0 0 chr6 148998379 148998413 -518624 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1721 1381 89 0 45 chr6 148998413 148998613 -518424 + B2_Mm2 SINE B2 4 194 -1 1 1721 1138 64 0 7 chr6 148998839 148998981 -518056 + B1_Mus2 SINE Alu 2 142 -5 1 1721 208 0 62 0 chr6 148998984 148999016 -518021 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1721 1000 157 33 11 chr6 148999027 148999207 -517830 + B2_Mm2 SINE B2 2 185 -10 1 1721 501 267 69 0 chr6 148999223 148999354 -517683 + B1_Mur2 SINE Alu 2 141 -8 1 1721 1313 91 11 11 chr6 148999428 148999616 -517421 - B2_Mm2 SINE B2 -5 190 3 1 1721 706 132 0 0 chr6 149001039 149001145 -515892 - U6 snRNA snRNA -1 106 1 1 1721 944 161 0 26 chr6 149001149 149001302 -515735 - B1_Mur2 SINE Alu 0 149 1 2 1721 24 53 0 0 chr6 149001680 149001718 -515319 + AT_rich Low_complexity Low_complexity 1 38 0 3 1721 32 0 0 0 chr6 149002299 149002331 -514706 + AT_rich Low_complexity Low_complexity 1 32 0 4 1721 1101 241 87 68 chr6 149002614 149003111 -513926 + MT2B LTR ERVL 5 601 0 5 1721 874 232 28 0 chr6 149003714 149003891 -513146 + B3 SINE B2 2 183 -33 6 1721 621 193 9 0 chr6 149004146 149004260 -512777 - B1_Mur2 SINE Alu -34 115 1 7 1721 338 276 19 28 chr6 149004163 149004271 -512766 - ID_B1 SINE B4 -48 176 70 8 1721 282 29 0 0 chr6 149004510 149004545 -512492 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 9 1721 37 39 0 0 chr6 149004829 149004880 -512157 + AT_rich Low_complexity Low_complexity 1 51 0 1 1721 566 220 18 9 chr6 149004907 149005017 -512020 - B3A SINE B2 -61 137 27 1 1721 1414 80 16 0 chr6 149005034 149005222 -511815 - B2_Mm2 SINE B2 -3 192 2 1 1721 433 247 74 0 chr6 149005271 149005352 -511685 + B3 SINE B2 47 133 -83 1 1721 1190 191 9 84 chr6 149005353 149005673 -511364 - RMER1C Other Other -3 1339 1044 1 1721 523 214 0 0 chr6 149005680 149005778 -511259 + B3 SINE B2 119 216 0 1 1721 302 361 33 8 chr6 149005834 149005954 -511083 - RSINE1 SINE B4 -40 125 3 1 1721 1005 333 150 45 chr6 149006487 149007087 -509950 + LTR41B LTR ERVL 92 754 -4 1 1721 235 253 91 26 chr6 149007443 149007520 -509517 + ID4_ SINE ID 1 82 -1 1 1721 849 312 39 31 chr6 149007555 149007810 -509227 - B4A SINE B4 0 292 36 1 1721 1300 166 261 10 chr6 149007832 149008131 -508906 - ORR1C1 LTR MaLR 0 378 5 1 1721 576 191 129 45 chr6 149008164 149008296 -508741 - B1_Mus2 SINE Alu -1 146 4 2 1721 1287 60 15 66 chr6 149008373 149008571 -508466 - B2_Mm2 SINE B2 -6 189 2 2 1721 555 170 8 118 chr6 149008825 149008952 -508085 - B1_Mur1 SINE Alu -1 119 7 2 1721 2005 236 22 49 chr6 149009229 149009785 -507252 + RLTR20A2 LTR ERVK 38 578 0 2 1721 402 254 165 25 chr6 149009881 149010002 -507035 + RSINE1 SINE B4 3 140 -25 2 1721 259 319 0 0 chr6 149010220 149010292 -506745 + RSINE1 SINE B4 93 164 -1 2 1721 312 322 32 40 chr6 149010375 149010501 -506536 + B4 SINE B4 2 126 -166 2 1721 836 309 29 0 chr6 149010498 149010705 -506332 + ID_B1 SINE B4 8 220 -4 2 1721 394 277 39 0 chr6 149010705 149010792 -506245 - ID4_ SINE ID -58 94 5 2 1721 1012 174 64 0 chr6 149010801 149010973 -506064 + B3 SINE B2 34 216 0 2 1721 37 62 0 0 chr6 149010995 149011060 -505977 + AT_rich Low_complexity Low_complexity 1 65 0 3 1721 34 72 0 0 chr6 149011118 149011187 -505850 + AT_rich Low_complexity Low_complexity 1 69 0 3 1721 890 183 96 10 chr6 149011325 149011524 -505513 + B3 SINE B2 1 216 0 3 1721 714 200 73 7 chr6 149011775 149011911 -505126 + B1_Mus1 SINE Alu 3 147 -1 3 1721 300 304 14 75 chr6 149011991 149012137 -504900 + MER4B-int LTR ERV1 4658 4794 -1964 3 1721 928 299 138 41 chr6 149012190 149012754 -504283 + MER21-int LTR ERV1 2000 2618 -1573 3 1721 681 276 7 13 chr6 149012819 149012973 -504064 + ID_B1 SINE B4 72 224 0 3 1721 212 232 158 18 chr6 149013027 149013084 -503953 + ID4 SINE ID 17 81 -2 3 1721 955 108 0 29 chr6 149013783 149013954 -503083 + Lx3A LINE L1 6816 6981 0 3 1721 1404 74 16 5 chr6 149014097 149014287 -502750 + B2_Mm2 SINE B2 4 195 0 3 1721 222 323 69 20 chr6 149014605 149014706 -502331 + MIR SINE MIR 35 140 -122 4 1721 205 356 82 37 chr6 149014722 149014911 -502126 - MIRc SINE MIR -47 215 26 4 1721 536 199 30 30 chr6 149014960 149015126 -501911 - Lx2B LINE L1 -7 6993 6828 4 1721 912 241 5 28 chr6 149015149 149015367 -501670 - B3 SINE B2 -1 215 3 4 1721 223 191 0 0 chr6 149015728 149015770 -501267 + A-rich Low_complexity Low_complexity 1 42 0 4 1721 1338 73 0 17 chr6 149017348 149017529 -499508 - B2_Mm2 SINE B2 -16 179 2 4 1721 560 238 74 40 chr6 149017608 149017757 -499280 + RSINE1 SINE B4 2 155 -10 4 1721 2661 216 50 117 chr6 149017855 149018771 -498266 + RLTR13A LTR ERVK 1 855 0 4 1721 290 275 218 15 chr6 149018778 149018911 -498126 + RSINE1 SINE B4 5 164 -1 4 1721 965 68 106 0 chr6 149018960 149019092 -497945 + B1_Mm SINE Alu 2 147 0 4 1721 599 205 79 0 chr6 149019148 149019275 -497762 - B1_Mur1 SINE Alu -3 146 10 5 1721 277 294 64 52 chr6 149019275 149019320 -497717 - B4A SINE B4 -69 223 50 5 1721 450 188 135 0 chr6 149019321 149019417 -497620 + RMER1A Other Other 176 284 -746 5 1721 2960 142 93 4 chr6 149019404 149019941 -497096 + RMER1A Other Other 432 1016 -14 5 1721 1335 66 66 0 chr6 149020117 149020300 -496737 + B2_Mm2 SINE B2 1 195 0 5 1721 862 164 134 57 chr6 149020393 149020587 -496450 + B3 SINE B2 1 209 -7 5 1721 779 203 21 0 chr6 149020756 149020899 -496138 - B1_Mur2 SINE Alu -2 147 2 5 1721 390 41 0 0 chr6 149021117 149021166 -495871 + B1_Mus1 SINE Alu 2 50 -98 5 1721 773 96 29 0 chr6 149022524 149022628 -494409 - U6 snRNA snRNA 0 107 1 5 1721 242 312 167 83 chr6 149022791 149022983 -494054 + MLT1G1 LTR MaLR 290 497 -82 5 1721 1217 41 0 0 chr6 149023019 149023165 -493872 - B1_Mus2 SINE Alu 0 147 2 5 1721 399 299 78 8 chr6 149023180 149023308 -493729 - ID_B1 SINE B4 0 224 88 6 1721 230 122 24 24 chr6 149023308 149023350 -493687 - RLTR31_Mur LTR ERVK 0 553 512 6 1721 972 224 28 9 chr6 149023427 149023639 -493398 - B3 SINE B2 0 216 1 6 1721 21 57 0 0 chr6 149023700 149023735 -493302 + AT_rich Low_complexity Low_complexity 1 35 0 6 1721 503 224 0 25 chr6 149023773 149023892 -493145 - ID_B1 SINE B4 -2 222 107 6 1721 215 311 32 163 chr6 149024497 149024518 -492519 - B1F SINE Alu -27 122 61 6 1721 322 281 146 0 chr6 149024518 149024607 -492430 - ID_B1 SINE B4 -18 206 105 6 1721 215 311 32 163 chr6 149024607 149024620 -492417 - B1F SINE Alu -27 60 16 6 1721 1265 41 0 0 chr6 149024710 149024857 -492180 + B1_Mus2 SINE Alu 1 147 0 6 1721 1616 42 0 0 chr6 149025019 149025210 -491827 - B2_Mm1t SINE B2 -1 192 2 6 1721 207 198 344 21 chr6 149025225 149025318 -491719 - L2c LINE L2 -86 3301 3179 6 1721 4619 188 92 11 chr6 149025474 149026454 -490583 - RMER1B Other Other -1 1065 7 7 1721 586 292 74 65 chr6 149026647 149026857 -490180 + B3A SINE B2 1 201 -15 7 1721 207 0 0 0 chr6 149027029 149027052 -489985 + (TAA)n Simple_repeat Simple_repeat 2 24 0 7 1721 414 156 0 0 chr6 149027140 149027204 -489833 - B1_Mus2 SINE Alu -12 135 72 7 1721 375 123 0 44 chr6 149027192 149027260 -489777 - MTEa LTR MaLR -314 65 1 7 1721 2284 110 90 0 chr6 149027265 149027619 -489418 + ORR1B1 LTR MaLR 1 386 -8 7 1721 255 122 0 0 chr6 149027914 149027963 -489074 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 7 1721 424 218 198 0 chr6 149028089 149028190 -488847 - RSINE1 SINE B4 -40 125 5 7 1721 280 289 79 0 chr6 149028327 149028403 -488634 + RSINE1 SINE B4 48 129 -36 7 1721 207 0 0 0 chr6 149028416 149028439 -488598 + (TA)n Simple_repeat Simple_repeat 1 23 0 7 1721 258 81 0 0 chr6 149028440 149028477 -488560 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 8 215 824 246 5 70 chr6 149028789 149028990 -488047 + B3A SINE B2 6 193 -5 8 1722 1499 73 0 5 chr6 149028992 149029186 -487851 - B2_Mm2 SINE B2 -2 193 1 8 1722 21 82 0 0 chr6 149029233 149029282 -487755 + AT_rich Low_complexity Low_complexity 1 49 0 8 1722 21 36 0 0 chr6 149029485 149029513 -487524 + AT_rich Low_complexity Low_complexity 1 28 0 8 1722 841 189 0 0 chr6 149029513 149029645 -487392 - B1_Mus2 SINE Alu -13 134 3 8 1722 209 200 0 0 chr6 149029645 149029685 -487352 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 8 1722 429 198 168 50 chr6 149029765 149029866 -487171 + B1_Mur1 SINE Alu 36 148 -1 8 1722 224 228 0 0 chr6 149029871 149029928 -487109 + A-rich Low_complexity Low_complexity 1 57 0 8 1722 290 183 14 0 chr6 149030297 149030368 -486669 + (TA)n Simple_repeat Simple_repeat 1 72 0 8 1722 1006 96 15 0 chr6 149030379 149030515 -486522 + B1_Mur4 SINE Alu 5 142 -8 9 1722 774 144 6 33 chr6 149030726 149030906 -486131 + CT-rich Low_complexity Low_complexity 2 176 0 9 1722 315 255 117 10 chr6 149031426 149031529 -485508 + PB1D7 SINE Alu 1 114 -6 9 1722 932 169 0 0 chr6 149031844 149031992 -485045 + B1_Mur3 SINE Alu 2 149 0 9 1722 690 47 0 0 chr6 149032399 149032485 -484552 + (CCA)n Simple_repeat Simple_repeat 3 88 0 9 1722 728 206 101 0 chr6 149033961 149034180 -482857 + L1MC3 LINE L1 7356 7596 -189 9 1722 2266 181 30 30 chr6 149034236 149034669 -482368 + Lx5 LINE L1 6618 7050 0 9 1722 773 266 43 72 chr6 149034694 149035039 -481998 - RLTR15 LTR ERVK -17 342 8 9 1722 366 279 84 28 chr6 149036023 149036130 -480907 + PB1D10 SINE Alu 7 119 -1 9 1722 349 200 47 54 chr6 149036470 149036618 -480419 - L1MB8 LINE L1 -1 6177 6031 9 1722 449 257 38 0 chr6 149036772 149036877 -480160 + RSINE1 SINE B4 29 137 -28 1 1722 768 76 34 27 chr6 149036937 149037086 -479951 - RMER17B LTR ERVK -497 461 312 1 1722 266 328 17 17 chr6 149037262 149037380 -479657 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 1722 198 171 0 0 chr6 149037387 149037428 -479609 + (TATG)n Simple_repeat Simple_repeat 4 44 0 1 1722 846 162 7 39 chr6 149038199 149038353 -478684 - B1_Mur3 SINE Alu 0 149 1 1 1722 593 239 82 123 chr6 149038374 149038593 -478444 - B3 SINE B2 -6 210 1 1 1722 438 181 0 0 chr6 149038651 149038723 -478314 - ID_B1 SINE B4 -2 222 151 1 1722 515 237 17 9 chr6 149038718 149038833 -478204 + B3 SINE B2 92 207 -9 1 1722 266 365 0 0 chr6 149038872 149038946 -478091 - MIR SINE MIR -188 74 1 1 1722 469 280 145 23 chr6 149038987 149039159 -477878 + B3A SINE B2 2 194 -4 1 1722 212 171 0 0 chr6 149039322 149039363 -477674 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 1722 1182 55 0 0 chr6 149040042 149040187 -476850 + B1_Mm SINE Alu 3 147 0 1 1722 225 0 0 0 chr6 149040187 149040212 -476825 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1722 560 221 133 29 chr6 149040229 149040439 -476598 + Lx6 LINE L1 7165 7396 -64 1 1722 345 100 0 0 chr6 149040444 149040494 -476543 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1722 668 124 97 9 chr6 149040517 149040631 -476406 + B1_Mus2 SINE Alu 18 141 -6 1 1722 180 0 0 0 chr6 149040633 149040653 -476384 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1 1722 304 299 102 9 chr6 149041221 149041329 -475708 - ID_B1 SINE B4 0 224 107 1 1722 353 265 90 9 chr6 149041455 149041572 -475465 + B1_Mur1 SINE Alu 2 144 -5 1 1722 813 180 181 22 chr6 149041580 149041762 -475275 + B3 SINE B2 4 214 -2 1 1722 285 253 0 12 chr6 149042747 149042827 -474210 + Lx8 LINE L1 5815 5893 -1580 1 1722 468 218 113 0 chr6 149042894 149043027 -474010 + B1_Mur2 SINE Alu 2 149 0 1 1722 26 30 0 0 chr6 149043162 149043195 -473842 + AT_rich Low_complexity Low_complexity 1 33 0 1 1722 508 252 43 43 chr6 149043597 149043724 -473313 + ID_B1 SINE B4 83 209 -15 1 1722 246 32 0 0 chr6 149043724 149043755 -473282 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1722 508 252 43 43 chr6 149043755 149043768 -473269 + ID_B1 SINE B4 210 222 -2 1 1722 327 245 152 54 chr6 149043880 149043992 -473045 - RSINE1 SINE B4 -23 142 20 1 1722 379 91 0 18 chr6 149043992 149044048 -472989 - B2_Mm2 SINE B2 -94 101 47 1 1722 1043 129 47 0 chr6 149044095 149044265 -472772 - B2_Mm1t SINE B2 -14 179 2 1 1722 21 0 0 0 chr6 149044360 149044381 -472656 + AT_rich Low_complexity Low_complexity 1 21 0 1 1722 1217 98 38 5 chr6 149044431 149044616 -472421 + B2_Mm1t SINE B2 1 191 -2 1 1722 1189 48 7 0 chr6 149044645 149044790 -472247 + B1_Mus1 SINE Alu 2 147 -1 1 1722 1676 275 123 89 chr6 149045543 149045870 -471167 + RCHARR1 DNA MER1_type 5 348 -626 1 1722 619 194 37 7 chr6 149045870 149046005 -471032 + B1F1 SINE Alu 3 141 -8 1 1722 1676 275 123 89 chr6 149046005 149046480 -470557 + RCHARR1 DNA MER1_type 349 839 -135 1 1722 1231 34 7 0 chr6 149046480 149046627 -470410 - B1_Mus1 SINE Alu 0 148 1 1 1722 1676 275 123 89 chr6 149046627 149046742 -470295 + RCHARR1 DNA MER1_type 840 954 -20 1 1722 1619 31 5 0 chr6 149046742 149046933 -470104 + B2_Mm1t SINE B2 1 192 -1 1 1722 753 303 47 21 chr6 149046941 149047145 -469892 + B3A SINE B2 3 193 0 1 1722 347 242 221 53 chr6 149047848 149047979 -469058 + B3 SINE B2 64 216 0 1 1722 288 0 0 0 chr6 149048053 149048085 -468952 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1722 537 284 54 54 chr6 149048096 149048245 -468792 - B3A SINE B2 -48 150 2 1 1722 207 0 0 0 chr6 149048900 149048923 -468114 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1722 454 217 35 9 chr6 149050542 149050658 -466379 + PB1D7 SINE Alu 2 120 0 1 1722 982 121 7 20 chr6 149051236 149051388 -465649 - B1_Mur4 SINE Alu 0 150 1 1 1722 333 68 0 0 chr6 149051568 149051612 -465425 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1722 498 321 15 8 chr6 149051626 149051758 -465279 - RSINE1 SINE B4 -29 136 4 1 1722 504 0 0 0 chr6 149051881 149051937 -465100 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1722 615 228 0 0 chr6 149051938 149052052 -464985 + B1_Mur4 SINE Alu 6 119 -31 1 1722 294 248 97 127 chr6 149051952 149052086 -464951 + MT2B LTR ERVL 183 312 -289 1 1722 608 280 32 6 chr6 149052329 149052487 -464550 - RSINE1 SINE B4 -2 163 2 1 1722 281 253 39 39 chr6 149052753 149052831 -464206 - B3A SINE B2 -118 80 3 1 1722 901 242 10 54 chr6 149052849 149053054 -463983 - B3A SINE B2 0 198 3 1 1722 373 250 45 103 chr6 149053065 149053221 -463816 - B1_Mur2 SINE Alu -2 147 1 1 1722 647 239 52 47 chr6 149053209 149053257 -463780 - ORR1B2-int LTR MaLR -1 1962 1912 1 1722 2152 140 74 3 chr6 149053257 149053609 -463428 - ORR1C1 LTR MaLR 0 378 2 1 1722 6925 161 35 95 chr6 149053609 149054393 -462644 - ORR1B2-int LTR MaLR -52 1911 784 1 1722 1166 68 7 0 chr6 149054393 149054539 -462498 - B1_Mm SINE Alu 0 147 1 1 1722 6925 161 35 95 chr6 149054539 149055339 -461698 - ORR1B2-int LTR MaLR -726 783 1 1 1722 1121 82 0 0 chr6 149055382 149055529 -461508 - B1_Mus2 SINE Alu 0 147 1 1 1722 1146 174 31 35 chr6 149055532 149055759 -461278 - ORR1B2 LTR MaLR -44 323 98 1 1722 240 324 95 29 chr6 149055780 149055885 -461152 - PB1 SINE Alu -7 120 9 1 1722 230 276 17 0 chr6 149055911 149055969 -461068 + YREP_Mm Unknown Unknown 238 296 -1516 1 1722 296 250 16 0 chr6 149055925 149055989 -461048 - B1_Mus1 SINE Alu -83 65 1 1 1722 737 277 78 4 chr6 149056114 149056346 -460691 - MLT1A0 LTR MaLR 0 365 117 1 1722 484 301 45 0 chr6 149056371 149056504 -460533 + ID_B1 SINE B4 86 224 0 1 1722 463 261 8 16 chr6 149056500 149056621 -460416 - MLT1A0 LTR MaLR -245 120 1 1 1722 691 291 28 30 chr6 149056639 149056898 -460139 + ID_B1 SINE B4 2 263 -29 1 1722 289 197 64 26 chr6 149056873 149056951 -460086 + ID_B1 SINE B4 140 220 -4 1 1722 2777 196 189 3 chr6 149057434 149057514 -459523 - RMER1B Other Other -9 1057 924 1 1722 189 0 0 0 chr6 149057514 149057535 -459502 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1722 2777 198 191 3 chr6 149057535 149058067 -458970 - RMER1B Other Other -143 923 17 1 1722 261 302 0 0 chr6 149058052 149058115 -458922 - RMER1B Other Other -586 480 418 1 1722 531 314 21 31 chr6 149058126 149058317 -458720 - ID_B1 SINE B4 -13 211 23 1 1722 891 312 23 24 chr6 149058343 149058723 -458314 - RMER1B Other Other -578 764 132 1 1722 304 288 115 14 chr6 149058690 149058838 -458199 - RMER1B Other Other -850 216 54 1 1722 368 324 29 0 chr6 149058904 149059009 -458028 + PB1D7 SINE Alu 1 108 -12 1 1722 727 259 25 20 chr6 149059048 149059185 -457852 + B3 SINE B2 6 147 -69 1 1722 2673 129 27 55 chr6 149059185 149059309 -457728 + RMER6B LTR ERVK 1 122 -339 1 1722 1071 60 0 7 chr6 149059309 149059444 -457593 + B1_Mus2 SINE Alu 1 134 -13 1 1722 288 0 0 0 chr6 149059444 149059476 -457561 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1722 2673 129 27 55 chr6 149059476 149059593 -457444 + RMER6B LTR ERVK 123 230 -231 1 1722 977 165 5 60 chr6 149059593 149059793 -457244 + B2_Mm2 SINE B2 1 189 -6 1 1722 2673 129 27 55 chr6 149059793 149060023 -457014 + RMER6B LTR ERVK 231 460 -1 1 1722 727 259 25 20 chr6 149060023 149060086 -456951 + B3 SINE B2 148 206 -10 1 1722 661 201 63 28 chr6 149060139 149060282 -456755 - B1_Mur2 SINE Alu 0 149 2 1 1722 1210 55 7 0 chr6 149060313 149060459 -456578 + B1_Mus1 SINE Alu 2 148 0 1 1722 239 71 24 0 chr6 149060459 149060501 -456536 + (CAAAAA)n Simple_repeat Simple_repeat 6 48 0 1 1722 461 348 12 12 chr6 149060508 149060671 -456366 + B3A SINE B2 1 163 -35 1 1722 328 227 108 78 chr6 149060762 149060891 -456146 + ORR1E LTR MaLR 178 310 -49 1 1722 505 160 176 92 chr6 149061276 149061407 -455630 - B1_Mur3 SINE Alu -7 142 1 1 1722 844 89 0 16 chr6 149061535 149061660 -455377 + B2_Mm2 SINE B2 2 124 -71 1 1722 402 21 0 0 chr6 149061679 149061726 -455311 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 1 1722 1111 109 0 0 chr6 149061727 149061874 -455163 + B1_Mur4 SINE Alu 2 148 -2 1 1722 231 36 0 0 chr6 149061874 149061902 -455135 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 1722 21 36 0 0 chr6 149061997 149062025 -455012 + AT_rich Low_complexity Low_complexity 1 28 0 1 1722 1237 41 0 0 chr6 149062134 149062280 -454757 + B1_Mus2 SINE Alu 2 147 0 1 1722 436 259 67 22 chr6 149062297 149062431 -454606 - B1F2 SINE Alu -5 144 5 1 1722 1187 41 0 40 chr6 149062457 149062609 -454428 - B1_Mus1 SINE Alu 0 148 3 1 1722 540 276 0 0 chr6 149062632 149062755 -454282 - ID_B1 SINE B4 -2 222 100 1 1722 1431 144 9 9 chr6 149062763 149063066 -453971 + RLTR15 LTR ERVK 1 359 0 1 1722 562 301 44 97 chr6 149063150 149063378 -453659 + ID_B1 SINE B4 9 224 0 1 1722 21 0 0 0 chr6 149063378 149063399 -453638 + AT_rich Low_complexity Low_complexity 1 21 0 1 1722 811 201 0 20 chr6 149063404 149063556 -453481 + B1_Mur1 SINE Alu 1 149 0 1 1722 1038 217 14 9 chr6 149063568 149063782 -453255 + B3 SINE B2 2 216 0 1 1722 215 192 13 52 chr6 149063794 149063833 -453204 + A-rich Low_complexity Low_complexity 2 37 0 1 1722 1134 69 7 0 chr6 149063833 149063978 -453059 + B1_Mus2 SINE Alu 1 146 -1 1 1722 215 192 13 52 chr6 149063978 149064015 -453022 + A-rich Low_complexity Low_complexity 38 74 0 1 1722 856 117 8 0 chr6 149064018 149064165 -452872 + B1_Mur3 SINE Alu 2 149 0 1 1722 253 233 17 0 chr6 149064224 149064284 -452753 + ID SINE ID 8 68 -156 1 1722 194 0 0 37 chr6 149064338 149064365 -452672 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1722 891 64 0 8 chr6 149064365 149064491 -452546 - B1_Mus1 SINE Alu -22 126 2 2 1722 186 71 0 0 chr6 149064492 149064520 -452517 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1722 893 232 18 32 chr6 149064550 149064768 -452269 + B3 SINE B2 2 216 0 2 1722 324 0 0 0 chr6 149064871 149064907 -452130 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1722 550 250 50 29 chr6 149064919 149065015 -452022 - B3A SINE B2 -55 143 43 2 1722 200 59 29 0 chr6 149065015 149065049 -451988 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1722 1082 79 0 0 chr6 149065049 149065188 -451849 - B1_Mus1 SINE Alu -8 140 2 2 1722 550 250 50 29 chr6 149065188 149065230 -451807 - B3A SINE B2 -156 42 2 2 1722 259 327 69 10 chr6 149065253 149065355 -451682 - RSINE1 SINE B4 0 165 58 2 1722 2220 163 19 24 chr6 149066199 149066363 -450674 + ORR1C1 LTR MaLR 1 163 -215 2 1722 276 91 0 0 chr6 149066363 149066407 -450630 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 2 1722 2220 163 19 24 chr6 149066407 149066620 -450417 + ORR1C1 LTR MaLR 164 376 -2 2 1722 22 0 0 0 chr6 149066664 149066686 -450351 + AT_rich Low_complexity Low_complexity 1 22 0 2 1722 329 197 15 0 chr6 149066731 149066797 -450240 + B3 SINE B2 1 67 -149 2 1722 546 278 56 32 chr6 149066850 149067066 -449971 + ID_B1 SINE B4 1 221 -3 2 1722 903 258 113 37 chr6 149067338 149067717 -449320 + MER92B LTR ERV1 1 408 -228 2 1722 237 225 62 12 chr6 149067751 149067832 -449205 + MER92B LTR ERV1 538 622 -14 2 1722 256 375 77 6 chr6 149067997 149068166 -448871 - MIR SINE MIR -42 220 40 2 1722 228 306 14 0 chr6 149068577 149068649 -448388 + MER90a LTR ERV1 238 310 -304 2 1722 428 267 41 8 chr6 149068669 149068790 -448247 + ID_B1 SINE B4 60 184 -40 2 1722 242 271 39 71 chr6 149068700 149068827 -448210 + B1_Mm SINE Alu 13 135 -12 2 1722 206 128 0 25 chr6 149068844 149068870 -448167 + polypyrimidine Low_complexity Low_complexity 16 41 0 2 1722 1612 37 5 0 chr6 149068870 149069060 -447977 - B2_Mm1t SINE B2 -1 192 2 2 1722 206 128 0 25 chr6 149069060 149069073 -447964 + polypyrimidine Low_complexity Low_complexity 3 15 0 2 1722 286 275 48 36 chr6 149069076 149069159 -447878 - PB1D10 SINE Alu -15 102 19 2 1722 351 261 49 35 chr6 149069167 149069310 -447727 - MER99 DNA hAT? -665 166 22 2 1722 256 240 25 51 chr6 149069314 149069393 -447644 + PB1D10 SINE Alu 39 115 -2 2 1722 327 286 24 0 chr6 149069651 149069735 -447302 - B1F2 SINE Alu -6 143 58 2 1722 378 197 0 90 chr6 149069773 149069851 -447186 - ID4 SINE ID -6 77 7 2 1722 263 85 21 0 chr6 149070521 149070568 -446469 + (TCTG)n Simple_repeat Simple_repeat 2 49 0 2 1722 457 260 16 31 chr6 149070568 149070695 -446342 - B1_Mur1 SINE Alu -24 125 1 2 1722 464 256 16 49 chr6 149070699 149070822 -446215 - B3A SINE B2 0 198 80 2 1722 1433 54 27 0 chr6 149070940 149071125 -445912 + B2_Mm1a SINE B2 2 191 -2 2 1722 180 77 0 0 chr6 149071126 149071152 -445885 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1722 31 0 0 0 chr6 149071459 149071490 -445547 + AT_rich Low_complexity Low_complexity 1 31 0 2 1722 564 15 0 0 chr6 149071514 149071579 -445458 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1722 229 312 13 0 chr6 149071921 149071998 -445039 - ID2 SINE ID -4 79 2 2 1722 224 235 0 0 chr6 149072285 149072365 -444672 + (CATA)n Simple_repeat Simple_repeat 1 80 0 2 1722 488 246 23 16 chr6 149072381 149072509 -444528 - B1F1 SINE Alu -20 129 1 2 1722 1120 218 182 19 chr6 149072596 149072914 -444123 - ORR1D2 LTR MaLR 0 370 1 2 1722 468 143 20 10 chr6 149073022 149073107 -443930 + CT-rich Low_complexity Low_complexity 15 100 0 2 1722 3088 73 32 118 chr6 149073107 149073634 -443403 - RLTR45 LTR ERVK 0 482 1 2 1722 468 143 20 10 chr6 149073634 149073647 -443390 + polypyrimidine Low_complexity Low_complexity 1 14 0 2 1722 824 160 25 25 chr6 149073650 149073810 -443227 - B2_Mm2 SINE B2 -30 165 6 2 1722 532 167 138 17 chr6 149073871 149073987 -443050 - B3 SINE B2 -86 130 1 2 1722 1083 100 59 0 chr6 149074049 149074219 -442818 - B2_Mm2 SINE B2 -1 194 15 2 1722 399 230 80 0 chr6 149074291 149074303 -442734 + B4 SINE B4 70 89 -203 2 1722 560 122 0 22 chr6 149074303 149074395 -442642 + B1_Mm SINE Alu 1 90 -57 2 1722 1301 97 32 0 chr6 149074574 149074759 -442278 + B2_Mm2 SINE B2 3 193 -2 2 1722 558 0 0 0 chr6 149074881 149074943 -442094 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1722 811 159 35 0 chr6 149074950 149075095 -441942 - B1_Mur4 SINE Alu 0 150 1 2 1722 557 184 53 0 chr6 149075144 149075258 -441779 + B1_Mur3 SINE Alu 24 143 -6 2 1722 1019 177 55 10 chr6 149075265 149075465 -441572 - B3 SINE B2 -5 211 3 2 1722 1141 62 0 20 chr6 149075605 149075754 -441283 - B1_Mus2 SINE Alu -1 146 1 2 1722 1176 78 0 27 chr6 149075960 149076145 -440892 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1722 4248 122 70 36 chr6 149076181 149076926 -440111 + Lx LINE L1 5885 6654 0 2 1722 1198 62 0 0 chr6 149077143 149077288 -439749 - B1_Mm SINE Alu 0 147 3 2 1722 236 146 24 0 chr6 149077627 149077668 -439369 + B3 SINE B2 1 42 -174 2 1722 250 196 18 0 chr6 149077672 149077728 -439309 + MYSERV6-int LTR ERVK 8901 8957 -2 2 1722 186 43 0 0 chr6 149078017 149078040 -438997 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 2 1722 25 31 0 0 chr6 149078592 149078624 -438413 + AT_rich Low_complexity Low_complexity 1 32 0 2 1722 1235 34 0 0 chr6 149078648 149078794 -438243 + B1_Mus2 SINE Alu 1 146 -1 2 1722 246 272 53 34 chr6 149078815 149078918 -438119 - B4A SINE B4 -61 104 1 2 1722 900 94 0 0 chr6 149079089 149079217 -437820 + (GA)n Simple_repeat Simple_repeat 2 129 0 2 1722 827 121 113 7 chr6 149079425 149079562 -437475 + RLTR23 LTR ERV1 1 153 -277 2 1722 716 272 131 33 chr6 149079562 149079897 -437140 - RLTR9A LTR ERVK 0 368 1 2 1722 1263 148 82 66 chr6 149079897 149080154 -436883 + RLTR23 LTR ERV1 148 409 -21 2 1722 1212 103 53 11 chr6 149080215 149080402 -436635 + B2_Mm2 SINE B2 1 195 0 2 1722 210 243 107 13 chr6 149080658 149080733 -436304 - L2 LINE L2 -630 2789 2708 2 1722 822 86 217 7 chr6 149081331 149081483 -435554 + B2_Mm2 SINE B2 6 189 -6 2 1722 265 169 0 92 chr6 149081489 149081554 -435483 + 4.5SRNA scRNA scRNA 28 86 -8 2 1722 761 32 0 0 chr6 149081510 149081605 -435432 + B1_Mm SINE Alu 46 140 -7 2 1722 611 68 23 0 chr6 149081611 149081699 -435338 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 2 1722 312 94 0 0 chr6 149082425 149082478 -434559 + (T)n Simple_repeat Simple_repeat 1 53 0 2 1722 692 104 3 12 chr6 149083646 149083761 -433276 - LTRIS_Mus LTR ERV1 -60 527 334 2 1722 1219 179 238 9 chr6 149084089 149084433 -432604 + RMER10A LTR ERVL 3 425 -17 2 1722 292 250 96 40 chr6 149084480 149084605 -432432 - RLTR13B2 LTR ERVK -32 790 659 2 1722 259 235 148 0 chr6 149085210 149085291 -431746 - RLTR13B2 LTR ERVK -1021 93 1 2 1722 333 118 0 0 chr6 149085292 149085343 -431694 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1722 405 263 119 63 chr6 149085479 149085747 -431290 + RLTR9A LTR ERVK 86 368 0 2 1722 1234 141 30 67 chr6 149086829 149087096 -429941 + RLTR45 LTR ERVK 1 257 -225 2 1722 708 119 34 0 chr6 149087096 149087214 -429823 + RLTR45 LTR ERVK 361 482 0 2 1722 782 116 15 15 chr6 149087410 149087541 -429496 - RMER6A LTR ERVK -7 749 619 2 1722 1655 116 89 26 chr6 149087543 149087845 -429192 - ORR1A4 LTR MaLR -8 321 1 2 1722 338 107 18 0 chr6 149088502 149088558 -428479 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 2 1722 723 181 39 0 chr6 149088558 149088685 -428352 - B1_Mur4 SINE Alu -13 137 6 2 1722 313 231 103 69 chr6 149088584 149088700 -428337 - B4 SINE B4 -93 199 80 2 1722 473 291 102 0 chr6 149088729 149088856 -428181 - B1_Mur1 SINE Alu -7 142 3 2 1722 586 257 47 47 chr6 149088866 149089058 -427979 - B3A SINE B2 -4 194 3 2 1722 180 0 0 0 chr6 149089103 149089123 -427914 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 1722 429 210 170 0 chr6 149089128 149089228 -427809 - RSINE1 SINE B4 -37 128 12 2 1722 263 227 0 26 chr6 149089248 149089325 -427712 + CT-rich Low_complexity Low_complexity 1 75 0 2 1722 376 199 411 13 chr6 149089325 149089483 -427554 - ID_B1 SINE B4 -3 221 1 2 1722 322 281 90 8 chr6 149090323 149090445 -426592 - B1F SINE Alu 0 149 18 2 1722 318 227 0 70 chr6 149091294 149091365 -425672 - B1_Mur3 SINE Alu -82 67 2 2 1722 295 197 30 0 chr6 149091501 149091567 -425470 + ID SINE ID 15 82 -142 2 1722 288 282 0 0 chr6 149091572 149091643 -425394 + B1F SINE Alu 48 118 -31 2 1722 824 208 43 62 chr6 149091658 149091868 -425169 - B3 SINE B2 -5 211 6 2 1722 272 67 0 62 chr6 149091993 149092005 -425032 + (A)n Simple_repeat Simple_repeat 1 11 0 2 1722 1393 74 26 0 chr6 149092005 149092194 -424843 + B2_Mm2 SINE B2 1 194 -1 2 1722 1202 68 0 0 chr6 149092194 149092341 -424696 + B1_Mus1 SINE Alu 1 148 0 2 1722 272 67 0 62 chr6 149092341 149092375 -424662 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1722 287 263 79 1 chr6 149093188 149093286 -423751 + PB1D7 SINE Alu 8 112 -8 2 1722 291 288 0 0 chr6 149093527 149093600 -423437 + MTEa LTR MaLR 6 78 -301 2 1722 1871 195 30 20 chr6 149093614 149094017 -423020 - MTD LTR MaLR -8 411 5 2 1722 754 296 34 48 chr6 149094020 149094169 -422868 + MTEa LTR MaLR 77 233 -146 2 1722 1531 42 16 10 chr6 149094169 149094362 -422675 - B2_Mm2 SINE B2 0 195 2 3 1722 754 296 34 48 chr6 149094362 149094503 -422534 + MTEa LTR MaLR 234 363 -16 2 1722 459 127 0 0 chr6 149094521 149094592 -422445 - PB1D9 SINE Alu -16 104 34 3 1722 585 209 283 6 chr6 149094641 149094800 -422237 - B3 SINE B2 -8 208 6 3 1722 486 315 90 7 chr6 149095468 149095612 -421425 - RSINE1 SINE B4 -2 163 8 3 1722 261 276 111 47 chr6 149095906 149096077 -420960 - L1MEd LINE L1 -5460 659 478 3 1722 434 191 169 0 chr6 149096119 149096208 -420829 + PB1D9 SINE Alu 5 108 -12 3 1722 531 0 0 0 chr6 149096213 149096272 -420765 + (TTC)n Simple_repeat Simple_repeat 2 60 0 3 1722 243 0 0 0 chr6 149096272 149096299 -420738 + (TTA)n Simple_repeat Simple_repeat 2 28 0 3 1722 835 119 17 0 chr6 149096312 149096430 -420607 - PB1D9 SINE Alu 0 120 1 3 1722 182 62 0 30 chr6 149096442 149096475 -420562 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1722 1493 53 11 0 chr6 149096875 149097062 -419975 - B2_Mm1t SINE B2 -2 191 3 3 1722 450 264 12 66 chr6 149097373 149097539 -419498 + RNLTR23 LTR ERVK 486 642 0 3 1722 269 209 0 15 chr6 149097674 149097742 -419295 + CT-rich Low_complexity Low_complexity 2 68 0 3 1722 872 40 194 0 chr6 149097745 149097869 -419168 - B1_Mus1 SINE Alu 0 148 1 3 1722 514 234 102 0 chr6 149097883 149098011 -419026 - ID_B1 SINE B4 0 224 84 3 1722 309 333 14 7 chr6 149098024 149098169 -418868 - B1F SINE Alu -2 147 2 3 1722 783 169 0 0 chr6 149098224 149098354 -418683 + B3 SINE B2 1 130 -86 3 1722 417 282 7 78 chr6 149098488 149098561 -418476 - RSINE1 SINE B4 -32 133 60 3 1722 707 197 35 0 chr6 149098561 149098703 -418334 - B1_Mur2 SINE Alu -1 148 2 3 1722 417 282 7 78 chr6 149098703 149098771 -418266 - RSINE1 SINE B4 -106 59 2 3 1722 685 189 15 0 chr6 149099314 149099446 -417591 + B1_Mur2 SINE Alu 9 142 -7 3 1722 183 100 0 0 chr6 149099614 149099644 -417393 + (TATG)n Simple_repeat Simple_repeat 3 32 0 3 1722 1174 230 22 38 chr6 149099919 149100235 -416802 - RMER10B LTR ERVL -87 311 1 3 1722 2445 147 182 56 chr6 149100338 149100523 -416514 + RMER6C LTR ERVK 1 167 -523 3 1722 1135 76 119 23 chr6 149100523 149100699 -416338 + B2_Mm1t SINE B2 1 193 0 3 1722 2445 147 182 56 chr6 149100699 149101055 -415982 + RMER6C LTR ERVK 168 622 -68 3 1722 2807 82 39 2 chr6 149101055 149101461 -415576 - BGLII LTR ERVK 0 421 1 3 1722 2445 147 182 56 chr6 149101461 149101529 -415508 + RMER6C LTR ERVK 623 688 -2 3 1722 27 0 0 0 chr6 149101534 149101561 -415476 + AT_rich Low_complexity Low_complexity 1 27 0 3 1722 841 55 0 0 chr6 149101629 149101739 -415298 + B1_Mm SINE Alu 37 146 -1 3 1722 252 258 292 0 chr6 149102109 149102229 -414808 - ID_B1 SINE B4 -52 172 18 3 1722 723 74 243 7 chr6 149102378 149102514 -414523 + B2_Mm2 SINE B2 1 168 -27 3 1722 1341 214 71 4 chr6 149102529 149102870 -414167 + L1_Mur3 LINE L1 1 384 -7328 3 1722 526 194 178 14 chr6 149103206 149103352 -413685 + L1_Mur3 LINE L1 112 281 -7431 3 1722 2069 123 72 61 chr6 149103352 149103743 -413294 + RMER10B LTR ERVL 4 398 0 3 1722 502 176 86 8 chr6 149104081 149104210 -412827 - RLTR22_Mur LTR ERVK -117 1731 1545 3 1722 655 199 16 8 chr6 149104370 149104497 -412540 - B1_Mur1 SINE Alu -19 130 3 3 1722 1095 51 65 0 chr6 149104534 149104672 -412365 - B1_Mus2 SINE Alu 0 147 1 3 1722 233 279 14 42 chr6 149104856 149104927 -412110 + ID4_ SINE ID 5 73 -10 3 1722 252 232 18 0 chr6 149105007 149105063 -411974 - ID4 SINE ID -14 69 13 3 1722 1461 195 257 30 chr6 149105279 149105777 -411260 + RMER19C LTR ERVK 1 611 0 3 1722 1036 116 0 0 chr6 149105873 149106019 -411018 + B1_Mus1 SINE Alu 1 146 -2 3 1722 22 35 0 0 chr6 149106207 149106236 -410801 + AT_rich Low_complexity Low_complexity 1 29 0 3 1722 422 268 16 47 chr6 149106444 149106573 -410464 + ID_B1 SINE B4 100 224 0 3 1722 495 184 0 0 chr6 149107146 149107233 -409804 + RSINE1 SINE B4 2 88 -77 3 1722 264 368 84 0 chr6 149107233 149107312 -409725 + B2_Mm2 SINE B2 1 180 -15 3 1722 555 243 14 42 chr6 149107341 149107353 -409684 - B3 SINE B2 0 216 209 3 1722 1135 88 0 0 chr6 149107353 149107500 -409537 - B1_Mus2 SINE Alu 0 147 1 3 1722 555 243 14 42 chr6 149107500 149107629 -409408 - B3 SINE B2 -8 208 79 3 1722 226 169 339 0 chr6 149107694 149107752 -409285 + B3 SINE B2 2 79 -137 3 1722 568 108 0 0 chr6 149107752 149107835 -409202 - ORR1D-int LTR MaLR 0 1370 1288 3 1722 3356 187 87 60 chr6 149107834 149108031 -409006 - ORR1D-int LTR MaLR -506 864 633 3 1722 1146 43 0 0 chr6 149108031 149108169 -408868 + B1_Mus2 SINE Alu 1 138 -9 3 1722 246 32 0 0 chr6 149108169 149108200 -408837 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1722 3356 187 87 60 chr6 149108200 149108842 -408195 - ORR1D-int LTR MaLR -738 632 2 3 1722 1528 53 16 0 chr6 149108931 149109119 -407918 - B2_Mm2 SINE B2 -3 192 2 3 1722 464 149 0 58 chr6 149109137 149109258 -407779 + T-rich Low_complexity Low_complexity 2 115 0 3 1722 584 116 11 0 chr6 149109247 149109342 -407695 + (TCTCCC)n Simple_repeat Simple_repeat 3 98 0 3 1722 236 247 54 43 chr6 149109617 149109710 -407327 + B1F SINE Alu 56 149 0 3 1722 347 290 74 0 chr6 149109802 149109964 -407073 + L1M4 LINE L1 4248 4421 -1725 3 1722 431 220 0 11 chr6 149109973 149110065 -406972 + PB1D10 SINE Alu 21 111 -6 3 1722 1211 56 0 0 chr6 149110102 149110246 -406791 - B1_Mm SINE Alu -3 144 1 3 1722 300 239 56 11 chr6 149110302 149110391 -406646 + B1_Mus1 SINE Alu 27 119 -29 3 1722 210 191 0 0 chr6 149110533 149110575 -406462 + C-rich Low_complexity Low_complexity 1 42 0 3 1722 1180 74 0 0 chr6 149110593 149110741 -406296 - B1_Mus1 SINE Alu 0 148 1 3 1722 1047 247 54 93 chr6 149110746 149111134 -405903 + MTE2a LTR MaLR 6 378 -1 3 1722 468 281 44 6 chr6 149111183 149111347 -405690 - B3A SINE B2 -14 179 1 3 1722 339 220 84 42 chr6 149111356 149111451 -405586 - ID_B1 SINE B4 -6 218 120 3 1722 1465 166 31 4 chr6 149111592 149111846 -405191 - Lx LINE L1 -1 6653 6393 3 1722 7735 138 33 7 chr6 149111846 149113165 -403872 - L1_Mur1 LINE L1 -1791 4095 2743 3 1722 2952 164 120 39 chr6 149113250 149113976 -403061 + MYSERV16_I-int LTR ERVK 1 1371 -1471 3 1722 1033 224 0 36 chr6 149114053 149114328 -402709 - RMER19B LTR ERVK -675 227 1 3 1722 419 336 9 15 chr6 149114641 149114654 -402383 - B1F SINE Alu 0 150 7 3 1722 330 303 47 54 chr6 149114654 149114783 -402254 - ID_B1 SINE B4 -9 215 88 3 1722 713 151 39 23 chr6 149114892 149115021 -402016 - B1_Mm SINE Alu 0 147 17 3 1722 214 400 13 40 chr6 149115166 149115317 -401720 - MIR SINE MIR -76 186 40 3 1722 1890 179 147 53 chr6 149115680 149116212 -400825 + RLTR6_Mm LTR ERV1 3 584 -70 3 1722 29 0 0 0 chr6 149116457 149116486 -400551 + AT_rich Low_complexity Low_complexity 1 29 0 3 1722 551 237 25 17 chr6 149116621 149116741 -400296 + ID_B1 SINE B4 103 223 -1 3 1722 248 258 30 0 chr6 149116821 149116887 -400150 + MLT1A1 LTR MaLR 292 359 -49 3 1722 412 283 186 14 chr6 149116949 149117089 -399948 + RSINE1 SINE B4 2 165 0 3 1722 813 244 2 10 chr6 149117106 149117284 -399753 + B3 SINE B2 45 215 -1 3 1722 621 188 139 8 chr6 149117293 149117422 -399615 - B1_Mur1 SINE Alu -1 148 3 3 1722 1154 107 6 0 chr6 149117445 149117622 -399415 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 3 1722 415 240 0 94 chr6 149117634 149117740 -399297 + PB1D10 SINE Alu 3 98 -19 3 1722 582 267 139 118 chr6 149118171 149118512 -398525 - RLTR40 LTR ERVK -245 572 203 3 1722 3938 65 12 4 chr6 149118512 149119005 -398032 + L1Md_F2 LINE L1 6084 6580 -2 3 1722 582 267 139 118 chr6 149119005 149119195 -397842 - RLTR40 LTR ERVK -615 202 30 3 1722 266 253 109 11 chr6 149120065 149120157 -396880 + RMER5 LTR ERV1 430 530 -4 3 1722 533 229 45 9 chr6 149120654 149120764 -396273 - PB1D7 SINE Alu -6 114 1 3 1722 1149 66 0 0 chr6 149121394 149121531 -395506 - B1_Mus1 SINE Alu -10 138 2 3 1722 512 265 54 16 chr6 149121797 149121981 -395056 - RMER5 LTR ERV1 -4 530 340 3 1722 1391 209 86 31 chr6 149121952 149122278 -394759 - ORR1D1 LTR MaLR -29 345 2 3 1722 919 113 37 8 chr6 149123135 149123269 -393768 + B1_Mus1 SINE Alu 2 139 -9 3 1722 363 44 0 0 chr6 149123269 149123314 -393723 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 3 1722 180 0 0 0 chr6 149123314 149123333 -393704 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 3 1722 1582 187 322 19 chr6 149124432 149124857 -392180 + RMER15 LTR ERVL 22 575 0 3 1722 560 154 18 71 chr6 149124991 149125103 -391934 - B1_Mus1 SINE Alu -8 140 35 3 1722 469 260 31 23 chr6 149125087 149125217 -391820 - RMER5 LTR ERV1 -182 352 222 3 1722 260 196 18 18 chr6 149125280 149125337 -391700 - RMER5 LTR ERV1 -431 103 47 3 1722 280 232 48 24 chr6 149126141 149126225 -390812 + MER21B LTR ERV1 416 501 -362 3 1722 1168 113 60 0 chr6 149126641 149126783 -390254 + B2_Mm2 SINE B2 1 152 -43 3 1722 405 0 0 0 chr6 149126783 149126828 -390209 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 1722 1168 113 60 0 chr6 149126828 149126853 -390184 + B2_Mm2 SINE B2 153 177 -18 3 1722 356 341 112 18 chr6 149127184 149127201 -389836 + MER21B LTR ERV1 548 564 -299 3 1722 1543 166 92 129 chr6 149127201 149127582 -389455 + ORR1B2 LTR MaLR 1 367 0 3 1722 356 341 112 18 chr6 149127582 149127734 -389303 + MER21B LTR ERV1 565 732 -131 3 1722 262 347 84 0 chr6 149128116 149128211 -388826 - PB1D10 SINE Alu -5 112 10 3 1722 747 345 82 41 chr6 149128333 149128823 -388214 + RLTR21 LTR ERVK 10 519 -1053 3 1722 349 284 69 37 chr6 149129127 149129362 -387675 + RLTR21 LTR ERVK 715 974 -430 3 1722 1189 82 7 0 chr6 149129482 149129628 -387409 + B1_Mus1 SINE Alu 2 148 0 3 1722 243 180 0 0 chr6 149129628 149129678 -387359 + A-rich Low_complexity Low_complexity 1 50 0 3 1722 981 194 129 0 chr6 149129840 149130026 -387011 - B3 SINE B2 -4 212 3 3 1722 362 329 12 66 chr6 149130082 149130248 -386789 - ID_B1 SINE B4 0 224 68 3 1722 321 286 112 19 chr6 149130262 149130369 -386668 + B4 SINE B4 75 191 -101 4 1722 628 184 9 9 chr6 149130274 149130384 -386653 + PB1D9 SINE Alu 9 118 -2 4 1722 596 275 22 7 chr6 149130523 149130662 -386375 - ID_B1 SINE B4 -2 222 82 4 1722 1472 89 11 0 chr6 149131232 149131422 -385615 - B2_Mm1t SINE B2 0 193 2 4 1722 229 120 19 39 chr6 149131489 149131541 -385496 + T-rich Low_complexity Low_complexity 4 54 0 4 1722 483 208 41 20 chr6 149131555 149131653 -385384 - B1F2 SINE Alu -21 128 29 4 1722 1248 48 7 0 chr6 149132111 149132256 -384781 + B1_Mus2 SINE Alu 2 147 0 4 1722 210 118 0 0 chr6 149132284 149132318 -384719 + (TTA)n Simple_repeat Simple_repeat 3 36 0 4 1722 564 228 97 22 chr6 149132343 149132492 -384545 - RSINE1 SINE B4 0 165 1 4 1722 505 297 67 0 chr6 149132496 149132661 -384376 - ID_B1 SINE B4 0 224 49 4 1722 725 220 21 7 chr6 149132637 149132779 -384258 - B1_Mm SINE Alu -2 145 2 4 1722 326 210 83 83 chr6 149132681 149132790 -384247 - MT2B LTR ERVL -344 257 149 4 1722 736 233 72 50 chr6 149132790 149132971 -384066 - B3A SINE B2 -10 185 1 4 1722 526 319 0 0 chr6 149132975 149133119 -383918 - B1F SINE Alu -5 144 1 4 1722 359 111 93 0 chr6 149133218 149133272 -383765 + PB1D9 SINE Alu 54 112 -8 4 1722 493 291 20 34 chr6 149133873 149134019 -383018 - ID_B1 SINE B4 -3 221 78 4 1722 514 244 114 0 chr6 149134031 149134157 -382880 + ID_B1 SINE B4 81 219 -5 4 1722 819 238 86 45 chr6 149134170 149134368 -382669 + B3 SINE B2 3 208 -8 4 1722 236 28 56 0 chr6 149134802 149134838 -382199 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1722 311 265 147 0 chr6 149134963 149135031 -382006 + ID4 SINE ID 3 80 -3 4 1722 2678 130 20 20 chr6 149135049 149135456 -381581 - MTB_Mm LTR MaLR 0 407 1 4 1722 308 326 57 14 chr6 149135919 149135931 -381106 + B1_Mur4 SINE Alu 4 88 -62 4 1722 479 224 33 49 chr6 149135931 149136053 -380984 + ID_B1 SINE B4 98 217 -7 4 1722 628 241 36 7 chr6 149136062 149136200 -380837 + ID_B1 SINE B4 80 221 -3 4 1722 694 255 118 35 chr6 149136200 149136403 -380634 + ID_B1 SINE B4 2 221 -3 4 1722 228 304 24 37 chr6 149136548 149136630 -380407 - ID_B1 SINE B4 0 224 144 4 1722 218 267 67 0 chr6 149136658 149136718 -380319 - MIR SINE MIR -49 213 150 4 1722 367 264 68 0 chr6 149136742 149136838 -380199 - PB1D7 SINE Alu -19 108 1 4 1722 1019 189 168 0 chr6 149137658 149137896 -379141 + RLTR19C LTR ERVK 1 278 -228 4 1722 560 252 154 58 chr6 149138010 149138335 -378702 + RLTR47_MM LTR ERV1 131 486 -46 4 1722 411 267 105 35 chr6 149138385 149138556 -378481 + RLTR19C LTR ERVK 533 715 0 4 1722 246 156 0 0 chr6 149138736 149138781 -378256 + (CAGGG)n Simple_repeat Simple_repeat 3 47 0 4 1722 235 186 0 54 chr6 149138788 149138800 -378237 + A-rich Low_complexity Low_complexity 3 14 0 4 1722 1169 101 0 20 chr6 149138800 149138951 -378086 + B1_Mus1 SINE Alu 1 148 0 4 1722 235 186 0 54 chr6 149138951 149139012 -378025 + A-rich Low_complexity Low_complexity 15 72 0 4 1722 617 96 11 0 chr6 149139491 149139585 -377452 + (TTTC)n Simple_repeat Simple_repeat 3 97 0 4 1722 5091 46 3 15 chr6 149139586 149140180 -376857 - LTRIS_Mus LTR ERV1 0 587 1 4 1722 551 53 0 13 chr6 149140180 149140256 -376781 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 4 1722 1091 122 87 0 chr6 149140256 149140428 -376609 - B2_Mm2 SINE B2 -8 187 1 4 1722 928 103 7 46 chr6 149140428 149140472 -376565 - B1_Mus1 SINE Alu -1 147 110 4 1722 3697 82 107 10 chr6 149140472 149140986 -376051 + LTRIS2 LTR ERV1 1 564 0 4 1722 928 103 7 46 chr6 149140986 149141094 -375943 - B1_Mus1 SINE Alu -39 109 1 4 1722 432 187 8 123 chr6 149140992 149141114 -375923 - MT2B LTR ERVL -344 257 150 4 1722 874 261 46 17 chr6 149141244 149141482 -375555 - RLTR41 LTR ERV1 -2 444 200 4 1722 1511 75 27 0 chr6 149141757 149141945 -375092 + B2_Mm1t SINE B2 1 193 0 4 1722 432 226 28 56 chr6 149142067 149142175 -374862 + RLTR23 LTR ERV1 1 105 -325 4 1722 944 252 47 106 chr6 149142187 149142546 -374491 + RLTR23 LTR ERV1 93 430 0 4 1722 654 228 37 0 chr6 149143574 149143710 -373327 + B1_Mur2 SINE Alu 8 148 -1 4 1722 1513 77 6 0 chr6 149143855 149144038 -372999 - B2_Mm1a SINE B2 -8 185 2 4 1722 268 24 24 24 chr6 149144114 149144156 -372881 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 4 1722 1023 142 0 45 chr6 149144156 149144300 -372737 - B1_Mur4 SINE Alu -10 140 1 4 1722 235 339 78 0 chr6 149144846 149144961 -372076 + Lx8 LINE L1 7243 7366 -107 4 1722 251 237 238 95 chr6 149145454 149145664 -371373 - RLTR47_MM LTR ERV1 -55 477 238 4 1722 22 35 0 0 chr6 149146300 149146329 -370708 + AT_rich Low_complexity Low_complexity 1 29 0 4 1722 586 174 103 40 chr6 149146403 149146529 -370508 - B1_Mur2 SINE Alu -9 140 7 4 1722 1042 85 30 0 chr6 149146538 149146703 -370334 + (TTTCC)n Simple_repeat Simple_repeat 2 171 0 4 1722 833 159 7 29 chr6 149146705 149146841 -370196 - B1_Mm SINE Alu -6 141 9 4 1722 1894 144 48 48 chr6 149146842 149147039 -369998 - RMER17C LTR ERVK 0 410 214 4 1722 420 20 0 0 chr6 149147039 149147088 -369949 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1722 1894 153 42 52 chr6 149147088 149147333 -369704 - RMER17C LTR ERVK -542 416 17 4 1722 1176 74 16 69 chr6 149147371 149147559 -369478 - B2_Mm2 SINE B2 -4 191 14 4 1722 3847 117 12 0 chr6 149148047 149148560 -368477 - Lx4A LINE L1 0 7058 6540 4 1722 483 254 111 0 chr6 149148798 149148924 -368113 + B1F SINE Alu 3 142 -7 4 1722 829 251 115 0 chr6 149148933 149149124 -367913 + B3 SINE B2 1 213 -3 4 1722 667 276 19 37 chr6 149149387 149149549 -367488 - RSINE1 SINE B4 -2 163 5 4 1722 258 193 193 0 chr6 149149588 149149645 -367392 + RMER30 DNA MER1_type 133 200 -2 4 1722 504 211 11 0 chr6 149150046 149150141 -366896 - B1_Mur4 SINE Alu 0 150 55 4 1722 1971 189 32 22 chr6 149151117 149151283 -365754 - RMER6D LTR ERVK 0 720 554 4 1722 1820 230 97 30 chr6 149151283 149151749 -365288 - RLTR19 LTR ERVK -2 497 1 4 1722 1971 193 36 35 chr6 149151749 149152012 -365025 - RMER6D LTR ERVK -129 627 312 4 1722 288 0 0 0 chr6 149152012 149152044 -364993 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 4 1722 1984 161 47 42 chr6 149152044 149152478 -364559 - RMER6D LTR ERVK -375 381 1 4 1722 189 0 0 0 chr6 149152747 149152768 -364269 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1722 1546 97 4 13 chr6 149153027 149153256 -363781 + RLTR33 LTR ERVK 1 227 -451 4 1722 566 271 28 35 chr6 149153321 149153466 -363571 + RSINE1 SINE B4 2 145 -20 4 1722 402 21 0 0 chr6 149153484 149153531 -363506 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1722 1313 123 37 0 chr6 149153666 149153853 -363184 - B2_Mm2 SINE B2 0 195 2 4 1722 501 318 99 20 chr6 149153927 149154078 -362959 + RSINE1 SINE B4 3 165 0 4 1722 384 229 0 0 chr6 149154078 149154187 -362850 + (TA)n Simple_repeat Simple_repeat 2 110 0 4 1722 26 20 0 58 chr6 149154189 149154210 -362827 + AT_rich Low_complexity Low_complexity 1 20 0 4 1722 852 216 0 0 chr6 149154210 149154349 -362688 + B1_Mus1 SINE Alu 1 139 -9 4 1722 26 20 0 58 chr6 149154349 149154379 -362658 + AT_rich Low_complexity Low_complexity 1 29 0 4 1722 463 259 11 62 chr6 149154389 149154566 -362471 + L1MC4 LINE L1 7476 7643 -399 4 1722 336 125 17 35 chr6 149154623 149154734 -362303 + (TA)n Simple_repeat Simple_repeat 2 110 0 4 1722 192 40 0 0 chr6 149154734 149154759 -362278 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1722 377 293 120 8 chr6 149154859 149154976 -362061 - B1F1 SINE Alu -9 140 11 4 1722 242 235 57 29 chr6 149154989 149155059 -361978 + MLT1H1 LTR MaLR 74 145 -410 4 1722 1141 68 55 12 chr6 149155194 149155358 -361679 + B2_Mm2 SINE B2 3 173 -22 4 1722 363 44 0 0 chr6 149155361 149155406 -361631 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1722 702 163 7 65 chr6 149155878 149156016 -361021 - B1_Mur3 SINE Alu -16 133 4 4 1722 3375 100 9 0 chr6 149156185 149156644 -360393 - L1_Mus1 LINE L1 -11 5872 5410 4 1722 5616 74 1 1 chr6 149156644 149157333 -359704 + L1_Mus1 LINE L1 5879 6567 0 4 1722 905 256 19 14 chr6 149157617 149157827 -359210 + B3 SINE B2 6 216 0 4 1722 1302 79 57 0 chr6 149157869 149158046 -358991 + B2_Mm1a SINE B2 1 187 -6 4 1722 312 137 0 0 chr6 149158116 149158167 -358870 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 4 1722 796 218 7 7 chr6 149158185 149158328 -358709 + B1_Mur1 SINE Alu 4 146 -3 4 1722 840 20 0 0 chr6 149158356 149158454 -358583 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 4 1722 2115 173 30 73 chr6 149158672 149159070 -357967 + RLTR14 LTR ERV1 2 382 0 4 1722 275 0 29 0 chr6 149159462 149159497 -357540 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1722 434 65 0 16 chr6 149159494 149159557 -357480 + (TCC)n Simple_repeat Simple_repeat 3 64 0 4 1722 324 0 0 0 chr6 149159826 149159862 -357175 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1722 198 0 0 0 chr6 149159864 149159886 -357151 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 215 323 296 12 0 chr6 149159886 149159967 -357070 + MER2 DNA MER2_type 222 303 -42 4 1723 425 234 0 11 chr6 149160336 149160439 -356598 - PB1D9 SINE Alu 0 120 19 4 1723 906 245 20 0 chr6 149160474 149160678 -356359 + B3 SINE B2 9 216 0 4 1723 742 199 13 46 chr6 149160712 149160865 -356172 - B1_Mur2 SINE Alu 0 149 2 4 1723 719 248 108 5 chr6 149160901 149161096 -355941 - B3 SINE B2 0 216 2 5 1723 1273 103 23 0 chr6 149161299 149161473 -355564 + B2_Mm1t SINE B2 2 179 -14 5 1723 397 87 365 37 chr6 149161539 149161646 -355391 + B2_Mm2 SINE B2 47 188 -7 5 1723 1885 143 244 50 chr6 149162258 149162716 -354321 - RLTR33 LTR ERVK -2 676 130 5 1723 285 345 17 17 chr6 149163272 149163446 -353591 - MuLV-int LTR ERV1 -6853 753 580 5 1723 2565 91 136 115 chr6 149164256 149164436 -352601 - RLTR47_MM LTR ERV1 0 532 332 5 1723 243 0 0 0 chr6 149164436 149164463 -352574 + (TTA)n Simple_repeat Simple_repeat 1 27 0 5 1723 2565 91 136 115 chr6 149164463 149164506 -352531 - RLTR47_MM LTR ERV1 -201 331 331 5 1723 1253 61 0 0 chr6 149164506 149164653 -352384 - B1_Mus2 SINE Alu 0 147 1 5 1723 2565 91 136 115 chr6 149164653 149164949 -352088 - RLTR47_MM LTR ERV1 -201 331 1 5 1723 1416 215 39 21 chr6 149164949 149165077 -351960 - ORR1D1 LTR MaLR -84 290 164 5 1723 2543 185 15 181 chr6 149165077 149165810 -351227 + RMER19C LTR ERVK 1 611 0 5 1723 1416 215 39 21 chr6 149165810 149165966 -351071 - ORR1D1 LTR MaLR -211 163 1 5 1723 282 200 0 0 chr6 149166085 149166135 -350902 + MTD LTR MaLR 368 417 -2 5 1723 790 203 0 33 chr6 149166187 149166340 -350697 + B1_Mus1 SINE Alu 1 148 0 5 1723 261 0 0 0 chr6 149166364 149166393 -350644 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1723 692 282 5 74 chr6 149166393 149166587 -350450 - B3 SINE B2 -33 183 4 5 1723 1538 195 84 20 chr6 149167091 149167446 -349591 + ORR1C1 LTR MaLR 1 378 0 5 1723 1046 275 54 17 chr6 149167498 149167794 -349243 + MTD LTR MaLR 1 307 -112 5 1723 22 70 0 0 chr6 149168072 149168115 -348922 + AT_rich Low_complexity Low_complexity 1 43 0 5 1723 297 323 135 0 chr6 149168153 149168249 -348788 + PB1D10 SINE Alu 1 109 -8 5 1723 1007 140 0 17 chr6 149168274 149168455 -348582 + GA-rich Low_complexity Low_complexity 3 180 0 5 1723 261 0 0 0 chr6 149168455 149168484 -348553 + (GAA)n Simple_repeat Simple_repeat 1 29 0 5 1723 261 91 0 0 chr6 149168825 149168869 -348168 - RLTR30 LTR ERV1 0 379 336 5 1723 723 203 8 0 chr6 149169284 149169402 -347635 - ETnERV2-int LTR ERVK -218 7188 7070 5 1723 921 236 85 105 chr6 149169403 149169877 -347160 + MT2B LTR ERVL 17 601 0 5 1723 641 154 50 159 chr6 149169877 149170069 -346968 - RLTR30 LTR ERV1 -38 341 172 5 1723 679 271 21 16 chr6 149170107 149170298 -346739 - RLTR30 LTR ERV1 -172 207 16 5 1723 242 244 38 13 chr6 149170301 149170380 -346657 + L1_Mur3 LINE L1 5299 5379 -501 5 1723 1483 226 88 71 chr6 149170386 149170852 -346185 - RLTR28B LTR ERVL -6 475 2 5 1723 186 71 0 0 chr6 149170886 149170914 -346123 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1723 574 197 64 21 chr6 149170983 149171123 -345914 - RLTR25B LTR ERVK 0 1028 883 5 1723 1927 217 91 11 chr6 149171111 149171651 -345386 - RMER12B LTR ERVK -468 936 354 5 1723 198 103 0 0 chr6 149171657 149171686 -345351 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1723 549 0 0 0 chr6 149171805 149171866 -345171 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1723 1836 209 8 0 chr6 149171883 149172241 -344796 - RMER12B LTR ERVK -1043 361 1 5 1723 322 275 11 11 chr6 149172273 149172365 -344672 - MER95 LTR ERV -311 120 29 5 1723 333 0 0 0 chr6 149172366 149172403 -344634 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1723 1930 138 36 12 chr6 149172428 149172624 -344413 + RLTR14 LTR ERV1 1 202 -180 5 1723 318 26 0 0 chr6 149172624 149172663 -344374 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1723 1930 138 36 12 chr6 149172663 149172796 -344241 + RLTR14 LTR ERV1 203 338 -44 5 1723 2103 119 226 45 chr6 149172905 149173388 -343649 + RLTR6_Mm LTR ERV1 37 606 -48 5 1723 467 254 49 28 chr6 149173457 149173599 -343438 + ID_B1 SINE B4 78 222 -2 5 1723 247 246 148 0 chr6 149173841 149173902 -343135 - RSINE1 SINE B4 -75 90 21 5 1723 4570 10 0 0 chr6 149173938 149174431 -342606 - MT2_Mm LTR ERVL 0 493 1 5 1723 321 0 0 0 chr6 149174431 149174469 -342568 - MERVL-int LTR ERVL 0 5485 5448 5 1723 339 125 26 53 chr6 149174469 149174545 -342492 - ORR1A3-int LTR MaLR -1323 640 567 5 1723 48926 15 1 0 chr6 149174545 149179909 -337128 - MERVL-int LTR ERVL -114 5371 1 5 1723 4570 10 0 0 chr6 149179909 149180402 -336635 - MT2_Mm LTR ERVL 0 493 1 5 1723 287 180 0 62 chr6 149180550 149180615 -336422 - PB1D10 SINE Alu -2 115 55 5 1723 1496 63 16 5 chr6 149180758 149180949 -336088 + B2_Mm2 SINE B2 2 194 -1 5 1723 231 167 0 0 chr6 149180950 149180992 -336045 + A-rich Low_complexity Low_complexity 3 44 0 5 1723 383 259 59 0 chr6 149181298 149181378 -335659 + RSINE1 SINE B4 22 106 -59 5 1723 338 294 49 0 chr6 149181378 149181480 -335557 + ID_B1 SINE B4 2 108 -116 5 1723 347 220 0 0 chr6 149181554 149181613 -335424 + B1_Mur3 SINE Alu 5 63 -86 5 1723 1370 55 0 6 chr6 149181817 149181998 -335039 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1723 372 332 82 9 chr6 149182075 149182306 -334731 - LTR73 LTR ERV1 -300 272 25 5 1723 339 286 214 0 chr6 149182782 149182922 -334115 + ID_B1 SINE B4 3 172 -52 5 1723 369 259 56 0 chr6 149182836 149182944 -334093 + PB1D9 SINE Alu 5 118 -2 5 1723 345 278 183 0 chr6 149182951 149183066 -333971 + ID_B1 SINE B4 86 221 -3 5 1723 1313 90 11 0 chr6 149183071 149183248 -333789 + B2_Mm1t SINE B2 1 179 -14 5 1723 267 116 354 37 chr6 149183276 149183389 -333648 + B2_Mm2 SINE B2 47 195 0 5 1723 632 253 130 0 chr6 149183401 149183555 -333482 + B3 SINE B2 4 177 -39 5 1723 2133 126 13 63 chr6 149183555 149183953 -333084 - RLTR1B LTR ERV1 0 512 135 5 1723 489 280 18 112 chr6 149184100 149184269 -332768 + B3A SINE B2 2 154 -44 5 1723 989 251 51 142 chr6 149184291 149184764 -332273 - RLTR23 LTR ERV1 0 430 1 5 1723 706 219 20 0 chr6 149184783 149184929 -332108 + B1_Mur4 SINE Alu 2 150 0 5 1723 1275 120 10 0 chr6 149184943 149185135 -331902 + B2_Mm2 SINE B2 2 195 0 5 1723 23 68 0 0 chr6 149185296 149185340 -331697 + AT_rich Low_complexity Low_complexity 1 44 0 5 1723 3113 172 138 83 chr6 149185561 149186416 -330621 + RMER19B LTR ERVK 1 902 0 5 1723 250 302 73 62 chr6 149186416 149186688 -330349 + RMER10A LTR ERVL 153 427 -15 5 1723 2603 204 15 107 chr6 149186878 149187560 -329477 + RMER20B LTR ERVK 9 627 0 5 1723 280 292 0 0 chr6 149187588 149187653 -329384 - ID4 SINE ID -15 68 4 5 1723 226 278 0 126 chr6 149187655 149187758 -329279 - PB1D10 SINE Alu -1 116 27 5 1723 353 237 74 62 chr6 149187993 149188155 -328882 - RLTR23 LTR ERV1 -2 428 265 5 1723 224 324 125 9 chr6 149188514 149188611 -328426 + B1F SINE Alu 9 118 -31 5 1723 1178 148 60 13 chr6 149188611 149188843 -328194 - RMER4A LTR ERVK 0 466 224 5 1723 288 130 0 0 chr6 149188844 149188890 -328147 - ORR1A3 LTR MaLR -203 123 78 5 1723 1022 96 7 33 chr6 149188890 149189041 -327996 + B1_Mus1 SINE Alu 2 148 0 5 1723 372 133 0 0 chr6 149189104 149189164 -327873 + (A)n Simple_repeat Simple_repeat 1 60 0 5 1723 2591 88 31 3 chr6 149189184 149189573 -327464 - ORR1A3-int LTR MaLR -51 1912 1513 5 1723 1002 116 0 0 chr6 149189649 149189804 -327233 + B2_Mm2 SINE B2 1 155 -40 5 1723 182 37 0 36 chr6 149189804 149189832 -327205 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 5 1723 1071 116 0 0 chr6 149189838 149189976 -327061 + B1_Mus1 SINE Alu 1 138 -10 5 1723 252 0 0 0 chr6 149189976 149190004 -327033 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1723 574 278 44 55 chr6 149190450 149190818 -326219 + IAPLTR3-int LTR ERVK 3064 3516 -3305 5 1723 251 248 57 47 chr6 149191711 149191817 -325220 - ETnERV2-int LTR ERVK -245 7161 7055 5 1723 1473 257 111 22 chr6 149191916 149192469 -324568 + RLTR1 LTR ERV1 2 624 0 5 1723 362 316 31 37 chr6 149192953 149193308 -323729 + ETnERV2-int LTR ERVK 5404 5518 -1888 5 1723 277 303 0 0 chr6 149194944 149195020 -322017 + MMERVK10C-int LTR ERVK 6556 6631 -950 5 1723 1648 42 0 0 chr6 149195691 149195883 -321154 + B2_Mm1a SINE B2 2 193 0 5 1723 284 167 0 0 chr6 149196685 149196733 -320304 + RLTR23 LTR ERV1 13 60 -370 5 1723 436 74 0 0 chr6 149196736 149196790 -320247 + L1VL2 LINE L1 173 226 -6109 5 1723 14191 81 64 10 chr6 149196791 149199617 -317420 + L1VL2 LINE L1 10 2988 -627 5 1723 701 249 62 26 chr6 149199754 149199981 -317056 - LTRIS4 LTR ERV1 0 507 273 5 1723 388 235 102 24 chr6 149200241 149200407 -316630 + L1MC LINE L1 3166 3344 -2802 5 1723 324 311 0 40 chr6 149200469 149200593 -316444 - L1MCa LINE L1 -5855 653 535 5 1723 636 115 0 0 chr6 149200635 149200748 -316289 + (GA)n Simple_repeat Simple_repeat 2 114 0 5 1723 2182 116 11 30 chr6 149200750 149201116 -315921 + RLTR23 LTR ERV1 72 430 0 5 1723 1132 69 14 0 chr6 149201414 149201559 -315478 - B1_Mm SINE Alu 0 147 1 5 1723 483 147 160 38 chr6 149201559 149201665 -315372 + B1_Mus2 SINE Alu 18 136 -11 5 1723 450 36 0 0 chr6 149201676 149201732 -315305 + (CCAA)n Simple_repeat Simple_repeat 2 57 0 5 1723 22 35 0 0 chr6 149202543 149202572 -314465 + AT_rich Low_complexity Low_complexity 1 29 0 5 1723 402 286 121 7 chr6 149203235 149203376 -313661 - RLTR42-int LTR ERVK -3727 1795 1639 5 1723 530 247 57 31 chr6 149203946 149204105 -312932 - RLTR42-int LTR ERVK -4123 1399 1237 5 1723 571 232 166 41 chr6 149204115 149204222 -312815 + RMER16 LTR ERVK 1 210 -323 5 1723 618 82 0 0 chr6 149204222 149204307 -312730 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 5 1723 571 230 238 16 chr6 149204307 149204489 -312548 + RMER16 LTR ERVK 211 424 -109 5 1723 1243 48 0 0 chr6 149204537 149204683 -312354 - B1_Mus2 SINE Alu 0 147 2 5 1723 900 94 0 0 chr6 149204683 149204811 -312226 + (TTTC)n Simple_repeat Simple_repeat 3 130 0 5 1723 1139 123 0 0 chr6 149204824 149204995 -312042 - B2_Mm2 SINE B2 -22 173 3 5 1723 242 188 94 0 chr6 149205000 149205064 -311973 + RMER16 LTR ERVK 464 533 0 5 1723 661 301 0 0 chr6 149205666 149205812 -311225 + RSINE1 SINE B4 3 148 -17 5 1723 245 288 67 67 chr6 149206464 149206583 -310454 + ID_B1 SINE B4 102 220 -4 5 1723 324 0 0 0 chr6 149206583 149206619 -310418 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1723 621 252 0 26 chr6 149206832 149206983 -310054 + B1F2 SINE Alu 3 149 0 6 1723 2165 153 6 129 chr6 149207125 149207628 -309409 + RLTR25B LTR ERVK 6 446 -582 6 1723 185 83 28 0 chr6 149207761 149207797 -309240 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 6 1723 966 68 97 8 chr6 149208190 149208324 -308713 - B1_Mm SINE Alu 0 147 2 6 1723 297 0 0 0 chr6 149208327 149208360 -308677 + (TTA)n Simple_repeat Simple_repeat 2 34 0 6 1723 366 77 0 0 chr6 149208372 149208431 -308606 - B1_Mm SINE Alu 0 147 62 6 1723 207 0 0 0 chr6 149208889 149208912 -308125 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1723 1131 75 7 0 chr6 149208968 149209114 -307923 + B1_Mus2 SINE Alu 1 147 0 6 1723 190 152 0 33 chr6 149209118 149209179 -307858 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 6 1723 195 42 0 0 chr6 149210019 149210043 -306994 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1723 21 0 0 0 chr6 149210088 149210109 -306928 + AT_rich Low_complexity Low_complexity 1 21 0 6 1723 313 195 50 50 chr6 149210142 149210244 -306793 + MuRRS-int LTR ERV1 2110 2234 -5372 6 1723 617 350 93 53 chr6 149210651 149212433 -304604 + MuRRS-int LTR ERV1 2521 4482 -3124 6 1723 295 287 0 65 chr6 149212814 149212884 -304153 + MuRRS4-int LTR ERV1 3228 3292 -2025 6 1723 4228 38 36 2 chr6 149212884 149213386 -303651 + MURVY-LTR LTR ERV1 1 519 0 6 1723 295 237 9 110 chr6 149213386 149213425 -303612 + MuRRS4-int LTR ERV1 3293 3314 -2003 6 1723 22 70 0 0 chr6 149213966 149214009 -303028 + AT_rich Low_complexity Low_complexity 1 43 0 6 1723 1068 93 0 0 chr6 149214095 149214235 -302802 + B1_Mus1 SINE Alu 1 140 -8 6 1723 198 128 0 0 chr6 149214258 149214297 -302740 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1723 311 280 133 115 chr6 149214753 149214839 -302198 - RLTR20A2 LTR ERVK 0 551 461 6 1723 2817 37 37 69 chr6 149214839 149215216 -301821 - RLTR10B2 LTR ERVK 0 365 1 6 1723 311 280 133 115 chr6 149215216 149215230 -301807 - RLTR20A2 LTR ERVK -91 460 444 6 1723 495 73 0 0 chr6 149215230 149215298 -301739 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 1723 508 230 161 71 chr6 149215298 149215527 -301510 - RLTR20A2 LTR ERVK -108 443 215 6 1723 589 163 174 98 chr6 149215540 149215724 -301313 + RLTR20C LTR ERVK 1 198 -336 6 1723 2179 79 9 21 chr6 149215727 149215766 -301271 - ORR1A1 LTR MaLR -13 333 293 6 1723 1481 78 16 0 chr6 149215766 149215957 -301080 - B2_Mm2 SINE B2 0 195 2 6 1723 2179 79 9 21 chr6 149215957 149215976 -301061 - ORR1A1 LTR MaLR -54 292 279 6 1723 195 69 0 0 chr6 149215976 149216005 -301032 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1723 2179 79 9 21 chr6 149216005 149216282 -300755 - ORR1A1 LTR MaLR -68 278 1 6 1723 265 206 16 0 chr6 149216355 149216418 -300619 + RLTR20C LTR ERVK 369 432 -102 6 1723 609 110 0 0 chr6 149216419 149216510 -300527 + (TG)n Simple_repeat Simple_repeat 2 92 0 6 1723 659 293 38 39 chr6 149216727 149217139 -299898 + MuRRS4-int LTR ERV1 3272 3958 -1105 6 1723 1011 168 16 56 chr6 149217237 149217477 -299560 + RLTR9B LTR ERVK 152 437 0 6 1723 423 109 0 0 chr6 149217477 149217506 -299531 + B2_Mm1t SINE B2 147 175 -18 6 1723 311 202 75 52 chr6 149217650 149217777 -299260 - RLTR13D3 LTR ERVK -62 1052 845 6 1723 2805 12 95 6 chr6 149217824 149218161 -298876 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1723 7353 102 74 66 chr6 149218161 149219457 -297580 + IAPEz-int LTR ERVK 8 1313 -5168 6 1723 29470 20 1 1 chr6 149219456 149222727 -294310 + IAPEz-int LTR ERVK 3210 6481 0 6 1723 2952 12 95 6 chr6 149222727 149223064 -293973 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1723 312 210 148 0 chr6 149223587 149223668 -293369 - RLTR13D3 LTR ERVK -1021 93 1 6 1723 1294 88 52 6 chr6 149223809 149223981 -293056 + B2_Mm2 SINE B2 2 181 -14 6 1723 2358 97 3 6 chr6 149224071 149224404 -292633 - IAPLTR1a_Mm LTR ERVK -5 332 1 6 1723 1908 151 73 17 chr6 149224409 149224553 -292484 + RLTR9A2 LTR ERVK 6 166 -217 6 1723 194 0 0 37 chr6 149224553 149224580 -292457 + (ATAAG)n Simple_repeat Simple_repeat 2 27 0 6 1723 1908 151 73 17 chr6 149224580 149224793 -292244 + RLTR9A2 LTR ERVK 167 382 -1 6 1723 206 231 0 0 chr6 149225298 149225337 -291700 + L4 LINE RTE 1785 1823 -206 6 1723 1160 98 90 23 chr6 149225869 149226046 -290991 + B2_Mm2 SINE B2 3 191 -4 6 1723 244 306 90 59 chr6 149226394 149226545 -290492 + ORR1A3-int LTR MaLR 454 611 -1352 6 1723 546 240 66 35 chr6 149226545 149226757 -290280 + MT2B LTR ERVL 1 216 -368 6 1723 257 192 47 82 chr6 149226769 149226854 -290183 + MT2B LTR ERVL 91 172 -361 6 1723 1025 233 75 21 chr6 149227196 149227477 -289560 + MT2B LTR ERVL 259 554 -47 6 1723 463 222 42 17 chr6 149227516 149227635 -289402 - RLTR25B LTR ERVK -9 1019 898 6 1723 615 182 19 149 chr6 149227619 149227780 -289257 - RLTR25B LTR ERVK -257 771 632 6 1723 450 0 0 0 chr6 149227832 149227882 -289155 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 6 1723 2425 156 6 105 chr6 149228394 149228889 -288148 - RLTR25B LTR ERVK -582 446 1 6 1723 2331 148 42 11 chr6 149228899 149228960 -288077 - ORR1B1 LTR MaLR 0 394 335 6 1723 225 0 0 0 chr6 149228960 149228985 -288052 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1723 2331 148 42 11 chr6 149228985 149229305 -287732 - ORR1B1 LTR MaLR -60 334 3 6 1723 225 0 0 0 chr6 149229386 149229411 -287626 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1723 1219 42 35 0 chr6 149229411 149229553 -287484 - B1_Mm SINE Alu 0 147 1 6 1723 375 160 0 0 chr6 149229917 149229992 -287045 + T-rich Low_complexity Low_complexity 1 75 0 6 1723 1265 48 7 0 chr6 149229992 149230138 -286899 - B1_Mm SINE Alu 0 147 1 6 1723 315 49 0 0 chr6 149230733 149230774 -286263 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1723 500 274 0 23 chr6 149230819 149230950 -286087 + RLTR14 LTR ERV1 207 334 -48 6 1723 1112 22 87 14 chr6 149231285 149231423 -285614 + B1_Mus1 SINE Alu 1 148 0 6 1723 737 283 83 51 chr6 149231551 149231961 -285076 - RLTR23 LTR ERV1 0 430 8 6 1723 2901 201 38 40 chr6 149232280 149232886 -284151 - RLTR1D LTR ERV1 0 605 1 6 1723 283 260 82 52 chr6 149232897 149233031 -284006 + Charlie1a DNA MER1_type 889 1026 -429 6 1723 267 325 12 24 chr6 149233070 149233152 -283885 + B1F SINE Alu 40 120 0 6 1723 27 0 0 65 chr6 149233260 149233286 -283751 + AT_rich Low_complexity Low_complexity 1 25 0 6 1723 1211 88 0 0 chr6 149233286 149233433 -283604 - B1_Mus2 SINE Alu 0 147 1 6 1723 27 0 0 65 chr6 149233433 149233452 -283585 + AT_rich Low_complexity Low_complexity 1 18 0 6 1723 1393 72 22 0 chr6 149233473 149233654 -283383 + B2_Mm1a SINE B2 1 185 -8 6 1723 195 129 0 0 chr6 149235116 149235147 -281890 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1723 1290 42 0 0 chr6 149235147 149235290 -281747 - B1_Mm SINE Alu 0 147 5 6 1723 2249 203 51 20 chr6 149235438 149235890 -281147 - RLTR19-int LTR ERVK -1767 4370 3905 6 1723 198 0 0 0 chr6 149235890 149235912 -281125 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1723 1377 76 82 10 chr6 149235912 149236281 -280756 - RLTR1B LTR ERV1 -76 436 1 6 1723 1453 52 78 0 chr6 149236281 149236472 -280565 - RLTR1B-int LTR ERV1 0 3299 3094 6 1723 2625 73 0 19 chr6 149236473 149236643 -280394 + L1Md_F2 LINE L1 976 1145 -5493 6 1723 2232 152 100 5 chr6 149236643 149237013 -280024 - RLTR44A LTR ERVK 0 405 1 6 1723 33048 76 1 1 chr6 149237013 149241452 -275585 + L1Md_F2 LINE L1 1146 5584 -299 6 1723 7282 94 26 4 chr6 149241454 149242428 -274609 + L1Md_F2 LINE L1 5587 6581 -1 6 1723 21 0 0 0 chr6 149242498 149242519 -274518 + AT_rich Low_complexity Low_complexity 1 21 0 6 1723 737 295 14 14 chr6 149243511 149243793 -273244 - RLTR4_MM-int LTR ERV1 -2521 5080 4799 6 1723 544 326 60 32 chr6 149244143 149244545 -272492 - RLTR4_MM-int LTR ERV1 -1944 3119 2763 6 1723 806 186 77 0 chr6 149244570 149244753 -272284 - RLTR19-int LTR ERVK -2389 3748 3552 6 1723 2217 115 18 67 chr6 149244753 149245064 -271973 + RLTR31_Mm LTR ERVK 1 317 -244 6 1723 1198 82 0 7 chr6 149245064 149245211 -271826 + B1_Mm SINE Alu 1 146 -1 6 1723 2217 115 18 67 chr6 149245211 149245230 -271807 + RLTR31_Mm LTR ERVK 318 318 -243 6 1723 207 0 0 0 chr6 149245230 149245253 -271784 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1723 2217 115 18 67 chr6 149245253 149245322 -271715 + RLTR31_Mm LTR ERVK 318 381 -180 6 1723 264 83 0 0 chr6 149245322 149245358 -271679 + RLTR10B2 LTR ERVK 1 36 -256 6 1723 1840 80 91 56 chr6 149245357 149245677 -271360 + RLTR10B2 LTR ERVK 5 335 -30 6 1723 799 231 5 94 chr6 149245693 149245894 -271143 + RLTR31_Mm LTR ERVK 379 561 0 6 1723 471 211 38 52 chr6 149245894 149246130 -270907 - RLTR19-int LTR ERVK -2580 3557 3189 6 1723 910 214 82 13 chr6 149246156 149246388 -270649 - RLTR42-int LTR ERVK -4187 1335 1088 6 1723 2729 60 158 2 chr6 149246855 149247255 -269782 + MT2C_Mm LTR ERVL 1 462 -13 6 1723 3739 199 66 54 chr6 149247256 149247812 -269225 - RodERV21-int LTR ERV1 -2348 2643 2114 6 1723 1714 146 179 13 chr6 149247812 149248125 -268912 + ORR1B2 LTR MaLR 1 365 -2 6 1723 3739 199 66 54 chr6 149248125 149248145 -268892 - RodERV21-int LTR ERV1 -2878 2113 2095 6 1723 3139 139 99 123 chr6 149248145 149248852 -268185 - RMER6C LTR ERVK 0 690 1 6 1723 3739 199 66 54 chr6 149248852 149249142 -267895 - RodERV21-int LTR ERV1 -2897 2094 1766 6 1723 453 271 10 0 chr6 149249142 149249238 -267799 - RLTR19 LTR ERVK 0 499 403 6 1723 1879 115 5 139 chr6 149249231 149249314 -267723 - ORR1A4 LTR MaLR -4 325 264 6 1723 1294 41 0 0 chr6 149249314 149249461 -267576 - B1_Mus2 SINE Alu 0 147 1 6 1723 1879 115 5 139 chr6 149249461 149249752 -267285 - ORR1A4 LTR MaLR -66 263 1 6 1723 1176 159 38 11 chr6 149249761 149250019 -267018 - RLTR33 LTR ERVK -114 564 216 6 1723 3596 45 0 0 chr6 149250031 149250427 -266610 - MTA_Mm LTR MaLR 0 396 1 6 1723 8832 58 16 2 chr6 149250429 149251510 -265527 - MTA_Mm-int LTR MaLR -2 1096 1 6 1723 3547 48 2 0 chr6 149251510 149251905 -265132 - MTA_Mm LTR MaLR 0 396 1 6 1723 789 243 60 22 chr6 149252122 149252307 -264730 - RodERV21-int LTR ERV1 -3222 1769 1578 6 1723 1252 161 83 11 chr6 149252313 149252750 -264287 + RLTR20D LTR ERVK 4 561 -7 6 1723 1237 116 35 0 chr6 149252755 149252927 -264110 + B2_Mm1t SINE B2 2 179 -14 6 1723 225 0 0 0 chr6 149253049 149253074 -263963 + (TAAAA)n Simple_repeat Simple_repeat 5 29 0 6 1723 1105 255 92 94 chr6 149253120 149253379 -263658 - RodERV21-int LTR ERV1 -3424 1567 1306 6 1723 1246 48 0 0 chr6 149253379 149253525 -263512 + B1_Mm SINE Alu 2 147 0 6 1723 1105 255 92 94 chr6 149253525 149253754 -263283 - RodERV21-int LTR ERV1 -3686 1305 1080 6 1723 2932 219 74 52 chr6 149253737 149254537 -262500 - RodERV21-int LTR ERV1 -4151 840 24 6 1723 183 114 0 0 chr6 149255042 149255077 -261960 + (CCCCCA)n Simple_repeat Simple_repeat 3 37 0 6 1723 279 269 170 7 chr6 149255385 149255520 -261517 - RLTR28B LTR ERVL -295 186 30 6 1723 486 242 142 45 chr6 149255565 149255699 -261338 - B1_Mur3 SINE Alu -1 148 2 6 1723 2068 147 106 27 chr6 149255790 149256167 -260870 + RLTR19B LTR ERVK 11 420 -295 6 1723 3026 114 99 0 chr6 149256167 149256651 -260386 - RLTR47_MM LTR ERV1 0 532 1 6 1723 2068 147 106 27 chr6 149256651 149256680 -260357 + RLTR19B LTR ERVK 421 449 -266 6 1723 244 254 120 87 chr6 149256859 149257078 -259959 + RLTR47_MM LTR ERV1 198 482 -50 6 1723 1292 171 50 4 chr6 149257076 149257317 -259720 + RLTR19B LTR ERVK 439 690 -25 6 1723 302 250 19 48 chr6 149257331 149257436 -259601 - RLTR23 LTR ERV1 -10 420 319 6 1723 256 0 0 0 chr6 149257449 149257478 -259559 + RLTR19A LTR ERVK 468 496 0 6 1723 552 276 49 0 chr6 149259033 149259156 -257881 + B1_Mur1 SINE Alu 15 143 -6 6 1723 569 207 81 7 chr6 149259465 149259601 -257436 - B3 SINE B2 -5 211 66 6 1723 334 266 119 0 chr6 149260024 149260133 -256904 + MIR SINE MIR 60 181 -81 6 1723 399 167 28 0 chr6 149260141 149260213 -256824 + PB1D9 SINE Alu 40 113 -7 6 1723 242 244 118 32 chr6 149260213 149260233 -256804 + B4 SINE B4 125 224 -68 6 1723 1445 66 60 0 chr6 149260259 149260442 -256595 - B2_Mm2 SINE B2 0 195 2 6 1723 315 312 55 16 chr6 149260525 149260652 -256385 - ID_B1 SINE B4 -37 187 56 6 1723 3016 71 55 3 chr6 149261421 149261801 -255236 + MTB LTR MaLR 1 400 0 6 1723 483 262 166 39 chr6 149261953 149262362 -254675 - L1M4 LINE L1 -2201 3945 3485 7 1723 380 278 0 0 chr6 149262396 149262468 -254569 + B1_Mus1 SINE Alu 10 81 -67 7 1723 277 368 38 0 chr6 149262658 149262764 -254273 + B1F1 SINE Alu 1 110 -39 7 1723 659 25 0 0 chr6 149262819 149262898 -254139 + L1Md_T LINE L1 6504 6582 0 7 1723 225 0 0 0 chr6 149262913 149262938 -254099 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1723 329 215 15 0 chr6 149264198 149264263 -252774 - ID_B1 SINE B4 -58 166 101 7 1723 401 277 8 89 chr6 149264381 149264504 -252533 + PB1D7 SINE Alu 6 118 -2 7 1723 612 261 87 16 chr6 149264513 149264696 -252341 + B3A SINE B2 2 197 -1 7 1723 1242 75 0 0 chr6 149264977 149265124 -251913 - B1_Mm SINE Alu 0 147 1 7 1723 243 0 0 0 chr6 149265127 149265154 -251883 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1723 492 267 0 0 chr6 149265576 149265696 -251341 - MER2 DNA MER2_type -104 241 122 7 1723 1215 54 0 39 chr6 149265734 149265887 -251150 - B1_Mm SINE Alu 0 147 1 7 1723 1332 96 32 5 chr6 149265947 149266135 -250902 - B2_Mm2 SINE B2 -2 193 1 7 1723 358 271 56 0 chr6 149266141 149266248 -250789 - PB1D7 SINE Alu -3 117 5 7 1723 320 274 122 43 chr6 149266844 149267008 -250029 + LTR48 LTR ERV1 5 181 -606 7 1723 1412 81 5 36 chr6 149267203 149267395 -249642 - B2_Mm1a SINE B2 -7 186 1 7 1723 676 199 298 0 chr6 149267424 149267585 -249452 - B3 SINE B2 -6 210 2 7 1723 371 21 21 0 chr6 149267834 149267882 -249155 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 7 1723 511 312 149 38 chr6 149268705 149269021 -248016 - MTE2a LTR MaLR -28 351 1 7 1723 309 272 37 55 chr6 149269319 149269428 -247609 - RLTR23 LTR ERV1 0 430 324 7 1723 295 297 18 18 chr6 149269490 149269603 -247434 + RLTR22_Mus LTR ERVK 444 556 -1252 7 1723 1477 70 38 0 chr6 149269694 149269879 -247158 - B2_Mm1t SINE B2 -1 192 1 7 1723 673 84 238 25 chr6 149269892 149270014 -247023 - B1_Mus1 SINE Alu 0 148 1 7 1723 394 356 6 18 chr6 149270022 149270188 -246849 - MTE2a LTR MaLR -209 170 7 7 1723 467 272 8 34 chr6 149270222 149270340 -246697 - PB1D10 SINE Alu -2 115 1 7 1723 1395 85 21 16 chr6 149270450 149270642 -246395 + B2_Mm2 SINE B2 1 193 -2 7 1723 586 224 11 167 chr6 149270859 149271181 -245856 - ORR1C1 LTR MaLR -2 372 1 7 1723 402 288 0 26 chr6 149271384 149271498 -245539 + PB1D9 SINE Alu 1 111 -9 7 1723 261 0 0 0 chr6 149271836 149271865 -245172 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1723 226 250 0 20 chr6 149271902 149271951 -245086 - MER21B LTR ERV1 -180 683 636 7 1723 213 39 0 0 chr6 149272392 149272418 -244619 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1723 1167 58 0 0 chr6 149273047 149273184 -243853 + B1_Mus1 SINE Alu 2 138 -10 7 1723 267 242 32 0 chr6 149273516 149273578 -243459 + ID4 SINE ID 18 81 -2 7 1723 287 270 0 171 chr6 149273796 149273872 -243165 + B1_Mur4 SINE Alu 49 118 -32 7 1723 240 339 139 0 chr6 149278354 149278469 -238568 - ID_B1 SINE B4 -17 207 77 7 1723 483 181 265 8 chr6 149279446 149279563 -237474 + B1_Mur2 SINE Alu 2 148 -1 7 1723 1110 59 73 0 chr6 149280157 149280293 -236744 - B1_Mus2 SINE Alu 0 147 2 7 1723 213 238 21 149 chr6 149280757 149280851 -236186 - PB1D10 SINE Alu -4 113 32 7 1723 358 241 286 25 chr6 149280808 149280927 -236110 - ID_B1 SINE B4 -69 155 6 7 1723 472 302 15 15 chr6 149281164 149281295 -235742 - B3A SINE B2 -67 131 1 7 1723 323 359 26 0 chr6 149281395 149281512 -235525 + PB1D7 SINE Alu 1 120 0 7 1723 315 167 16 16 chr6 149281515 149281576 -235461 + ID4_ SINE ID 2 62 -21 7 1723 314 247 27 0 chr6 149281576 149281588 -235449 + ID SINE ID 2 76 -148 7 1723 533 260 16 0 chr6 149282236 149282363 -234674 - ID_B1 SINE B4 -1 223 95 7 1723 1126 128 0 13 chr6 149282401 149282552 -234485 - B1_Mur4 SINE Alu -1 149 1 7 1723 280 320 118 39 chr6 149282556 149282709 -234328 - B3 SINE B2 0 216 52 7 1723 180 0 0 0 chr6 149282715 149282735 -234302 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1723 608 202 90 30 chr6 149282735 149282868 -234169 - B1_Mur1 SINE Alu 0 149 9 7 1723 500 304 9 0 chr6 149282891 149283006 -234031 - PB1D10 SINE Alu -1 116 1 7 1723 1138 83 14 0 chr6 149283561 149283706 -233331 - B1_Mus2 SINE Alu 0 147 1 7 1723 569 307 0 21 chr6 149283731 149283871 -233166 + ID_B1 SINE B4 87 223 -1 7 1723 1133 252 48 132 chr6 149284204 149284666 -232371 - RLTR23 LTR ERV1 0 430 8 7 1723 238 212 104 15 chr6 149284881 149284948 -232089 - RLTR47_MM LTR ERV1 -33 499 427 7 1723 1933 165 135 78 chr6 149284948 149285370 -231667 - RLTR41 LTR ERV1 0 446 1 7 1723 317 275 44 0 chr6 149285466 149285557 -231480 - B1F1 SINE Alu -17 132 38 7 1723 192 40 0 0 chr6 149285595 149285620 -231417 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1723 570 252 0 8 chr6 149285636 149285756 -231281 - RSINE1 SINE B4 -33 132 14 7 1723 261 38 36 54 chr6 149285788 149285844 -231193 + (TTTTTG)n Simple_repeat Simple_repeat 1 55 0 7 1723 257 280 0 0 chr6 149285877 149285927 -231110 - B1F1 SINE Alu -98 51 2 7 1723 253 348 56 0 chr6 149286023 149286112 -230925 + PB1D10 SINE Alu 24 117 0 7 1723 573 291 114 34 chr6 149286118 149286381 -230656 + B4A SINE B4 3 286 -6 7 1723 4852 170 81 34 chr6 149287240 149288084 -228953 + ORR1B2-int LTR MaLR 369 1260 -249 7 1723 1197 82 0 14 chr6 149288084 149288232 -228805 - B1_Mm SINE Alu 0 147 2 7 1723 4852 170 81 34 chr6 149288232 149288477 -228560 + ORR1B2-int LTR MaLR 1261 1509 0 7 1723 1181 126 39 0 chr6 149288484 149288666 -228371 + ORR1B2 LTR MaLR 8 196 -171 7 1723 574 59 314 10 chr6 149288669 149288771 -228266 + B1_Mus1 SINE Alu 8 140 -8 7 1723 468 182 0 0 chr6 149288793 149288870 -228167 + ORR1B2 LTR MaLR 185 261 -106 7 1723 1329 139 136 42 chr6 149288862 149289170 -227867 + RMER6D LTR ERVK 206 542 -178 7 1723 252 0 0 0 chr6 149289179 149289207 -227830 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1723 896 204 8 5 chr6 149289216 149289381 -227656 - RLTR20B3 LTR ERVK -39 538 378 7 1723 6966 167 48 32 chr6 149289381 149290743 -226294 - MYSERV16_I-int LTR ERVK -486 1840 458 7 1723 381 125 0 0 chr6 149290748 149290804 -226233 - ORR1B1-int LTR MaLR -553 956 901 7 215 3668 203 116 17 chr6 149290805 149291178 -225859 - ORR1B1-int LTR MaLR -520 989 592 7 1724 3000 71 62 131 chr6 149291178 149291696 -225341 + RLTR45 LTR ERVK 1 482 0 7 1724 3668 203 116 17 chr6 149291696 149292214 -224823 - ORR1B1-int LTR MaLR -918 591 10 7 1724 1354 118 16 0 chr6 149292698 149292885 -224152 + B2_Mm2 SINE B2 2 191 -4 7 1724 1248 74 0 0 chr6 149293245 149293393 -223644 + B1_Mus1 SINE Alu 1 148 0 7 1724 215 31 31 0 chr6 149293400 149293432 -223605 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 7 1724 666 68 0 0 chr6 149293432 149293520 -223517 + (GAAAA)n Simple_repeat Simple_repeat 3 90 0 7 1724 405 128 139 13 chr6 149293819 149293898 -223139 - ORR1B1 LTR MaLR -8 386 298 7 1724 285 196 20 0 chr6 149294409 149294460 -222577 + B1_Mus1 SINE Alu 4 55 -93 7 1724 602 216 411 21 chr6 149294467 149294673 -222364 + ORR1E LTR MaLR 76 396 0 7 1724 1385 99 0 63 chr6 149294735 149294940 -222097 - B2_Mm2 SINE B2 -2 193 2 7 1724 254 350 24 42 chr6 149294942 149295109 -221928 + RMER5 LTR ERV1 345 508 -26 7 1724 231 36 0 0 chr6 149295233 149295261 -221776 + (TC)n Simple_repeat Simple_repeat 2 29 0 7 1724 243 0 0 0 chr6 149295262 149295289 -221748 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1724 530 162 177 57 chr6 149295313 149295329 -221708 - B1_Mm SINE Alu -6 141 116 7 1724 300 27 0 0 chr6 149295329 149295366 -221671 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1724 609 154 112 28 chr6 149295366 149295473 -221564 - B1_Mur4 SINE Alu -32 118 3 7 1724 419 155 84 93 chr6 149295379 149295486 -221551 - MT2B LTR ERVL -344 257 152 7 1724 399 160 302 8 chr6 149295586 149295712 -221325 - B2_Mm2 SINE B2 -4 191 29 7 1724 1426 79 11 0 chr6 149295722 149295899 -221138 - B2_Mm1t SINE B2 -14 179 1 7 1724 360 0 0 0 chr6 149295918 149295958 -221079 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1724 2022 121 46 0 chr6 149295970 149296275 -220762 + ORR1A2 LTR MaLR 1 319 -8 7 1724 1518 209 92 106 chr6 149296371 149296712 -220325 + RLTR18B LTR ERVK 6 339 -173 7 1724 2980 115 29 45 chr6 149296712 149297202 -219835 + RLTR45 LTR ERVK 1 482 0 7 1724 1518 209 92 106 chr6 149297202 149297369 -219668 + RLTR18B LTR ERVK 340 507 -5 7 1724 940 259 78 39 chr6 149297490 149297851 -219186 + Lx9 LINE L1 5872 6246 -1398 7 1724 269 250 33 0 chr6 149297935 149297995 -219042 + Lx9 LINE L1 6396 6457 -1187 7 1724 410 249 114 119 chr6 149297995 149298196 -218841 - RLTR23 LTR ERV1 -7 423 224 7 1724 1192 137 101 10 chr6 149298458 149298665 -218372 - URR1A DNA MER1_type 0 226 1 7 1724 987 233 290 62 chr6 149298772 149299207 -217830 - RLTR20C LTR ERVK 0 534 1 7 1724 302 85 0 69 chr6 149299228 149299319 -217718 + A-rich Low_complexity Low_complexity 3 87 0 7 1724 212 0 36 0 chr6 149299319 149299347 -217690 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 7 1724 6155 137 85 37 chr6 149299358 149300440 -216597 - MYSERV16_I-int LTR ERVK -22 2304 1160 7 1724 1418 102 16 11 chr6 149300440 149300629 -216408 + B2_Mm2 SINE B2 3 192 -3 7 1724 6155 174 59 61 chr6 149300629 149301234 -215803 - MYSERV16_I-int LTR ERVK -1167 1159 435 7 1724 1242 36 0 0 chr6 149301234 149301371 -215666 + B1_Mm SINE Alu 1 137 -10 7 1724 198 0 0 0 chr6 149301371 149301393 -215644 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 7 1724 2877 181 54 65 chr6 149301393 149301486 -215551 - MYSERV16_I-int LTR ERVK -1892 434 351 7 1724 3433 20 50 8 chr6 149301501 149301903 -215134 - L1Md_F2 LINE L1 0 6582 6164 7 1724 1453 196 44 53 chr6 149302412 149302503 -214534 - MYSERV16_I-int LTR ERVK -1969 357 269 7 1724 1321 34 0 0 chr6 149302503 149302649 -214388 + B1_Mm SINE Alu 2 147 0 7 1724 1453 200 30 55 chr6 149302649 149303065 -213972 - MYSERV16_I-int LTR ERVK -2058 268 2 7 1724 189 0 0 0 chr6 149303291 149303312 -213725 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1724 322 248 56 92 chr6 149303671 149303813 -213224 - MYSERV16_I-int LTR ERVK -2501 341 205 7 1724 679 320 81 17 chr6 149304041 149304337 -212700 - MER92C LTR ERV1 -8 546 232 8 1724 1532 271 72 56 chr6 149304347 149304933 -212104 + RLTR1 LTR ERV1 30 624 0 8 1724 285 353 12 0 chr6 149304957 149305042 -211995 - MER92C LTR ERV1 -494 142 57 8 1724 427 288 123 0 chr6 149305053 149305199 -211838 + L1M2 LINE L1 4057 4220 -1923 8 1724 576 160 0 0 chr6 149305213 149305332 -211705 + (TG)n Simple_repeat Simple_repeat 2 120 0 8 1724 2040 181 91 50 chr6 149305335 149305469 -211568 - RMER16 LTR ERVK 0 533 403 8 1724 1344 93 27 0 chr6 149305469 149305652 -211385 - B2_Mm1t SINE B2 -5 188 1 8 1724 2040 181 91 50 chr6 149305652 149306000 -211037 - RMER16 LTR ERVK -131 402 31 8 1724 468 167 0 0 chr6 149306015 149306111 -210926 + (TG)n Simple_repeat Simple_repeat 1 96 0 8 1724 699 165 71 93 chr6 149306111 149306232 -210805 - B1_Mur3 SINE Alu -10 139 17 8 1724 1158 72 0 0 chr6 149306232 149306371 -210666 + B1_Mus2 SINE Alu 2 140 -7 8 1724 180 0 0 0 chr6 149306371 149306391 -210646 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1724 699 165 71 93 chr6 149306391 149306408 -210629 - B1_Mur3 SINE Alu -133 16 4 8 1724 454 229 0 48 chr6 149306414 149306538 -210499 + L1M2 LINE L1 4211 4328 -1812 8 1724 636 264 179 6 chr6 149306582 149306761 -210276 - ID_B1 SINE B4 -11 213 4 8 1724 335 211 22 0 chr6 149306811 149306901 -210136 + L1M2 LINE L1 4371 4462 -1681 8 1724 1582 196 173 81 chr6 149306910 149307443 -209594 + RLTR6_Mm LTR ERV1 3 584 -70 8 1724 189 74 0 0 chr6 149307471 149307498 -209539 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1724 252 195 0 0 chr6 149307615 149307656 -209381 + B2_Mm2 SINE B2 5 45 -150 8 1724 2350 101 162 111 chr6 149308206 149308773 -208264 - RLTR6_Mm LTR ERV1 -58 596 1 8 1724 530 277 8 0 chr6 149308780 149308899 -208138 + B3A SINE B2 38 157 -41 8 1724 283 243 149 0 chr6 149308921 149308995 -208042 + L1M2 LINE L1 4690 4774 -1369 8 1724 2007 145 36 22 chr6 149308995 149309355 -207682 - RLTR14 LTR ERV1 0 382 18 8 1724 1091 272 72 54 chr6 149309393 149309614 -207423 + L1M2 LINE L1 4770 5011 -1132 8 1724 665 222 8 0 chr6 149309614 149309731 -207306 + PB1D9 SINE Alu 3 120 0 8 1724 1091 272 72 54 chr6 149309731 149310011 -207026 + L1M2 LINE L1 5012 5280 -863 8 1724 711 90 0 0 chr6 149312601 149312701 -204336 + (CGTG)n Simple_repeat Simple_repeat 4 103 0 8 1724 209 57 0 28 chr6 149312842 149312878 -204159 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1724 4280 70 60 8 chr6 149312955 149313487 -203550 - LTRIS2 LTR ERV1 0 564 5 8 1724 399 230 23 35 chr6 149314899 149315070 -201967 + L1MA4 LINE L1 5270 5438 -862 8 1724 235 356 0 0 chr6 149315072 149315131 -201906 + tRNA-Ala-GCA tRNA tRNA 10 68 -7 8 1724 1305 239 53 53 chr6 149315136 149315587 -201450 + L1MA4 LINE L1 5429 5879 -421 8 1724 599 182 157 6 chr6 149315630 149315796 -201241 - Lx4B LINE L1 0 7058 6868 8 1724 717 92 85 78 chr6 149316747 149316876 -200161 - RLTR1B LTR ERV1 -382 130 1 8 1724 2157 78 37 88 chr6 149316893 149317246 -199791 - RLTR1B LTR ERV1 -177 335 1 8 1724 1526 168 0 4 chr6 149317247 149317510 -199527 - L1_Mur2 LINE L1 -421 5456 5195 8 1724 1484 89 0 10 chr6 149317823 149318016 -199021 - B2_Mm2 SINE B2 -4 191 1 8 1724 3264 68 7 15 chr6 149318555 149318763 -198274 - MTB LTR MaLR 0 400 197 8 1724 927 0 0 0 chr6 149318763 149318866 -198171 + (TTTC)n Simple_repeat Simple_repeat 3 105 0 8 1724 1704 22 0 0 chr6 149318866 149319045 -197992 - B2_Mm1a SINE B2 -14 179 1 8 1724 3264 68 7 15 chr6 149319045 149319238 -197799 - MTB LTR MaLR -204 196 2 8 1724 7748 98 19 0 chr6 149319456 149321312 -195725 - L1_Mus4 LINE L1 -12 6624 4732 8 1724 1197 63 0 7 chr6 149321354 149321498 -195539 - B1_Mus2 SINE Alu -2 145 3 8 1724 591 291 42 10 chr6 149321576 149321833 -195204 - MURVY-int LTR ERV1 -93 7359 7136 8 1724 1282 260 55 33 chr6 149322631 149322997 -194040 - MuRRS4-int LTR ERV1 -1043 4020 3647 8 1724 685 220 114 57 chr6 149323411 149323604 -193433 + RMER19C LTR ERVK 21 224 -387 8 1724 422 128 0 114 chr6 149323617 149323705 -193332 - RMER19C LTR ERVK -533 78 1 8 1724 494 194 7 128 chr6 149323970 149323991 -193046 + MT2B LTR ERVL 146 148 -453 8 1724 913 164 14 7 chr6 149323991 149324138 -192899 + B1_Mur2 SINE Alu 2 149 0 8 1724 2055 182 74 20 chr6 149324491 149324745 -192292 - MTC LTR MaLR -8 413 136 8 1724 2955 47 15 0 chr6 149324745 149325086 -191951 - ORR1A0 LTR MaLR 0 346 1 8 1724 2055 182 74 20 chr6 149325086 149325223 -191814 - MTC LTR MaLR -286 135 1 8 1724 830 253 158 16 chr6 149325895 149325959 -191078 - MTEb LTR MaLR -85 294 217 8 1724 513 0 0 0 chr6 149325959 149326016 -191021 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 1724 830 253 158 16 chr6 149326016 149326204 -190833 - MTEb LTR MaLR -163 216 7 8 1724 1607 63 5 0 chr6 149326518 149326709 -190328 + B2_Mm1t SINE B2 2 193 0 8 1724 249 33 0 0 chr6 149326709 149326739 -190298 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1724 820 251 33 38 chr6 149326748 149326959 -190078 + B3 SINE B2 2 211 -5 8 1724 183 80 0 0 chr6 149326968 149326993 -190044 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 8 1724 1182 181 60 46 chr6 149327098 149327452 -189585 - RMER16 LTR ERVK 0 533 1 8 1724 424 308 53 77 chr6 149327774 149327943 -189094 + B3A SINE B2 34 198 0 8 1724 6954 161 34 102 chr6 149327943 149329382 -187655 + L1_Mur3 LINE L1 3072 4434 -1446 8 1724 1288 48 7 0 chr6 149329382 149329528 -187509 + B1_Mm SINE Alu 1 147 0 8 1724 6954 161 34 102 chr6 149329528 149329750 -187287 + L1_Mur3 LINE L1 4435 4620 -1260 8 1724 436 190 166 95 chr6 149329751 149329888 -187149 - RLTR21 LTR ERVK 0 1404 1269 8 1724 360 0 0 0 chr6 149329888 149329928 -187109 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1724 4306 166 115 58 chr6 149329928 149330948 -186089 - RLTR21 LTR ERVK -492 1080 2 8 1724 3201 189 36 139 chr6 149330948 149331082 -185955 + L1_Mur3 LINE L1 4615 4743 -1137 8 1724 210 37 0 0 chr6 149331082 149331109 -185928 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1724 3201 189 36 139 chr6 149331109 149331919 -185118 + L1_Mur3 LINE L1 4744 5462 -418 8 1724 2020 157 27 80 chr6 149331919 149332320 -184717 - RLTR41 LTR ERV1 0 446 67 8 1724 1269 156 8 43 chr6 149332350 149332435 -184602 + L1_Mur3 LINE L1 5459 5542 -338 8 1724 1107 233 21 153 chr6 149332435 149332957 -184080 + RLTR11B LTR ERVK 1 453 0 8 1724 1269 156 8 43 chr6 149332957 149333106 -183931 + L1_Mur3 LINE L1 5543 5685 -195 8 1724 305 336 47 8 chr6 149333557 149333686 -183351 - MLT1N2 LTR MaLR -7 555 422 8 1724 633 266 32 9 chr6 149334072 149334236 -182801 - ID_B1 SINE B4 -39 253 81 8 1724 320 330 2 18 chr6 149334483 149334592 -182445 + PB1D7 SINE Alu 12 119 -1 8 1724 855 306 61 23 chr6 149335659 149335986 -181051 + Lx8 LINE L1 6949 7311 -162 8 1724 847 254 10 24 chr6 149336016 149336222 -180815 - B3 SINE B2 -12 204 2 8 1724 854 285 25 5 chr6 149336272 149336473 -180564 + B3 SINE B2 2 206 -10 8 1724 1278 89 10 21 chr6 149336565 149336759 -180278 - B2_Mm1t SINE B2 0 193 2 8 1724 247 228 9 56 chr6 149337034 149337141 -179896 + (TTTA)n Simple_repeat Simple_repeat 2 103 0 8 1724 1170 111 28 6 chr6 149337206 149337388 -179649 - B2_Mm2 SINE B2 -9 186 1 8 1724 753 298 35 35 chr6 149337468 149337753 -179284 - B4A SINE B4 -7 285 1 8 1724 216 0 0 0 chr6 149337774 149337798 -179239 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1724 739 259 9 68 chr6 149337800 149338020 -179017 - B3 SINE B2 -9 207 1 8 1724 516 207 133 67 chr6 149338243 149338393 -178644 + B3A SINE B2 3 162 -36 8 1724 1081 50 0 7 chr6 149338404 149338539 -178498 + B1_Mm SINE Alu 9 143 -4 8 1724 252 0 0 0 chr6 149338539 149338567 -178470 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 8 1724 232 266 125 0 chr6 149338791 149338855 -178182 - ID4 SINE ID -11 72 1 8 1724 404 342 9 0 chr6 149338858 149338969 -178068 - PB1D10 SINE Alu 0 117 6 8 1724 363 197 0 0 chr6 149339217 149339278 -177759 + ID_B1 SINE B4 94 154 -70 8 1724 363 255 117 0 chr6 149339278 149339311 -177726 + PB1D10 SINE Alu 13 117 0 8 1724 452 304 0 104 chr6 149339449 149339593 -177444 + MER58B DNA MER1_type 1 128 -213 8 1724 544 183 26 11 chr6 149339593 149339701 -177336 + B1_Mus2 SINE Alu 2 145 -2 8 1724 238 119 16 48 chr6 149339719 149339781 -177256 + (CAAAC)n Simple_repeat Simple_repeat 5 64 0 8 1724 3521 104 8 74 chr6 149340041 149340666 -176371 - RLTR6_Mm LTR ERV1 -70 584 1 8 1724 200 258 0 53 chr6 149340713 149340807 -176230 + T-rich Low_complexity Low_complexity 3 91 0 8 1724 1026 231 9 9 chr6 149340812 149341022 -176015 - B3 SINE B2 -6 210 1 8 1724 392 126 164 23 chr6 149341316 149341426 -175611 - B2_Mm2 SINE B2 -5 188 47 8 1724 1138 103 0 0 chr6 149341455 149341611 -175426 - B2_Mm2 SINE B2 -38 157 2 8 1724 787 284 103 16 chr6 149342050 149342293 -174744 + B4A SINE B4 1 264 -28 8 1724 677 302 0 30 chr6 149342479 149342646 -174391 + B3 SINE B2 1 162 -54 8 1724 955 63 47 0 chr6 149343073 149343200 -173837 + B1_Mus1 SINE Alu 1 133 -15 8 1724 441 0 0 0 chr6 149343213 149343262 -173775 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1724 4708 108 62 3 chr6 149343332 149344028 -173009 + RMER19A LTR ERVK 1 737 0 8 1724 207 0 0 0 chr6 149344050 149344073 -172964 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1724 1053 100 0 0 chr6 149344076 149344216 -172821 - B1_Mus1 SINE Alu -7 141 2 8 1724 224 278 31 62 chr6 149344602 149344698 -172339 + MIRb SINE MIR 170 262 -6 8 1724 269 299 43 50 chr6 149344821 149344962 -172075 - MIRc SINE MIR -41 227 88 8 1724 275 254 14 14 chr6 149345109 149345181 -171856 + MIR SINE MIR 71 142 -120 8 1724 372 133 0 0 chr6 149345191 149345251 -171786 + (TTA)n Simple_repeat Simple_repeat 1 60 0 8 1724 274 284 14 0 chr6 149345255 149345329 -171708 + MIR SINE MIR 161 235 -27 8 1724 26 30 0 0 chr6 149345419 149345452 -171585 + AT_rich Low_complexity Low_complexity 1 33 0 8 1724 419 208 132 0 chr6 149348303 149348409 -168628 - B1F1 SINE Alu -1 148 29 8 1724 1114 88 0 0 chr6 149348878 149349025 -168012 + B1_Mus1 SINE Alu 2 148 0 8 1724 490 211 203 0 chr6 149349063 149349186 -167851 - B1F1 SINE Alu -1 148 1 8 1724 627 182 106 16 chr6 149349303 149349426 -167611 - B1_Mur1 SINE Alu 0 149 16 8 1724 261 191 277 0 chr6 149349965 149350050 -166987 + MLT1A0 LTR MaLR 5 112 -262 9 1724 221 229 0 20 chr6 149350108 149350157 -166880 + CT-rich Low_complexity Low_complexity 1 48 0 9 1724 1443 65 11 0 chr6 149350782 149350966 -166071 + B2_Mm1a SINE B2 1 186 -7 9 1724 458 126 12 26 chr6 149350972 149351075 -165962 - B2_Mm1a SINE B2 -2 193 97 9 1724 226 86 0 0 chr6 149351073 149351108 -165929 - B3A SINE B2 -163 35 1 9 1724 25 0 0 0 chr6 149351400 149351425 -165612 + AT_rich Low_complexity Low_complexity 1 25 0 9 1724 1058 125 14 10 chr6 149351452 149351630 -165407 - RLTR21 LTR ERVK -177 1227 948 9 1724 642 106 0 0 chr6 149351651 149351745 -165292 - RLTR21 LTR ERVK -746 826 733 9 1724 288 145 48 0 chr6 149351749 149351832 -165205 + CT-rich Low_complexity Low_complexity 4 90 0 9 1724 369 305 29 0 chr6 149351841 149351946 -165091 - PB1D9 SINE Alu -11 109 2 9 1724 354 236 0 0 chr6 149352075 149352147 -164890 + L1MB8 LINE L1 5847 5918 -260 9 1724 269 302 35 0 chr6 149352193 149352279 -164758 - RMER15 LTR ERVL -73 502 414 9 1724 2000 197 3 24 chr6 149352507 149352877 -164160 - ORR1C1 LTR MaLR -14 364 3 9 1724 536 252 0 112 chr6 149353002 149353181 -163856 + B4A SINE B4 1 159 -133 9 1724 386 290 48 16 chr6 149353343 149353469 -163568 - B4 SINE B4 -127 165 36 9 1724 231 259 138 46 chr6 149353910 149354013 -163024 + B1F SINE Alu 2 149 0 9 1724 938 268 14 27 chr6 149354051 149354270 -162767 + B3 SINE B2 1 216 0 9 1724 774 187 15 0 chr6 149354438 149354572 -162465 + B1_Mur4 SINE Alu 6 141 -9 9 1724 228 86 0 0 chr6 149354572 149354607 -162430 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1724 212 59 0 29 chr6 149354633 149354668 -162369 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1724 345 107 0 0 chr6 149355471 149355527 -161510 + L1MA5 LINE L1 6245 6300 0 9 1724 1241 82 49 6 chr6 149355623 149355806 -161231 + B2_Mm1t SINE B2 1 191 -2 9 1724 1243 133 79 0 chr6 149356123 149356326 -160711 - URR1A DNA MER1_type -7 219 1 9 1724 1358 247 81 23 chr6 149356432 149356875 -160162 + RMER15 LTR ERVL 27 557 -18 9 1724 515 237 201 16 chr6 149359903 149360152 -156885 - L1MA8 LINE L1 -131 6160 5866 9 1724 45 0 0 0 chr6 149360179 149360224 -156813 + AT_rich Low_complexity Low_complexity 1 45 0 9 1724 23 54 0 0 chr6 149360403 149360440 -156597 + AT_rich Low_complexity Low_complexity 1 37 0 9 1724 805 79 172 16 chr6 149360541 149360669 -156368 + B1_Mus1 SINE Alu 1 148 0 9 1724 267 152 0 0 chr6 149360669 149360715 -156322 + A-rich Low_complexity Low_complexity 1 46 0 9 1724 21 82 0 0 chr6 149360792 149360841 -156196 + AT_rich Low_complexity Low_complexity 1 49 0 9 1724 252 0 0 0 chr6 149360946 149360974 -156063 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1724 1044 279 83 20 chr6 149360974 149361226 -155811 - B4 SINE B4 -23 269 2 9 1724 364 280 46 92 chr6 149361265 149361395 -155642 + RSINE1 SINE B4 12 135 -30 9 1724 516 72 0 0 chr6 149361397 149361466 -155571 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1724 681 37 0 0 chr6 149362056 149362137 -154900 - L1_Mus4 LINE L1 -947 5689 5609 9 1724 9350 109 28 1 chr6 149362758 149364542 -152495 - Lx2 LINE L1 -34 6963 5123 9 1724 722 251 56 51 chr6 149364600 149364814 -152223 - B3 SINE B2 0 216 2 9 1724 23 33 0 0 chr6 149364860 149364890 -152147 + AT_rich Low_complexity Low_complexity 1 30 0 9 1724 1426 222 74 54 chr6 149365003 149365047 -151990 - ORR1D1 LTR MaLR -15 359 311 9 1724 1351 75 21 0 chr6 149365047 149365234 -151803 + B2_Mm1t SINE B2 1 191 -2 9 1724 1426 222 74 54 chr6 149365234 149365368 -151669 - ORR1D1 LTR MaLR -64 310 179 9 1724 496 29 29 0 chr6 149365368 149365438 -151599 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 9 1724 1426 222 74 54 chr6 149365438 149365610 -151427 - ORR1D1 LTR MaLR -196 178 2 9 1724 399 302 33 38 chr6 149365831 149366041 -150996 - L2a LINE L2 -1 3425 3217 9 1724 323 286 26 0 chr6 149366445 149366522 -150515 + ID4_ SINE ID 3 81 -2 9 1724 1145 204 24 5 chr6 149366773 149366985 -150052 - B3 SINE B2 0 216 1 9 1724 260 358 128 47 chr6 149366985 149367281 -149756 - L2b LINE L2 -103 3323 3001 9 1724 257 316 46 105 chr6 149367289 149367441 -149596 - MER20 DNA MER1_type -18 201 59 9 1724 379 167 15 0 chr6 149367579 149367645 -149392 - MTEa LTR MaLR -312 67 1 9 1724 386 91 0 0 chr6 149367803 149367869 -149168 + L1Md_F2 LINE L1 6516 6581 -1 9 1724 223 170 43 0 chr6 149368178 149368225 -148812 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 9 1724 852 120 22 8 chr6 149368225 149368359 -148678 - B1_Mur4 SINE Alu -3 147 12 9 1724 1375 77 11 11 chr6 149368428 149368613 -148424 - B2_Mm1t SINE B2 -8 185 1 9 1724 473 283 0 9 chr6 149368731 149368838 -148199 + PB1D10 SINE Alu 9 114 -3 9 1724 390 218 40 14 chr6 149369032 149369136 -147901 - PB1D10 SINE Alu 0 120 11 9 1724 408 273 81 0 chr6 149369427 149369526 -147511 - PB1D9 SINE Alu -13 107 1 9 1724 207 390 27 54 chr6 149369529 149369582 -147455 - MIR SINE MIR -98 164 114 9 1724 1377 35 76 0 chr6 149369582 149369753 -147284 + B2_Mm1t SINE B2 2 185 -8 9 1724 207 390 27 54 chr6 149369753 149369848 -147189 - MIR SINE MIR -149 113 20 9 1724 261 0 0 0 chr6 149369867 149369896 -147141 + (TTG)n Simple_repeat Simple_repeat 2 30 0 9 1724 1124 75 0 7 chr6 149369896 149370036 -147001 - B1_Mus1 SINE Alu -8 140 1 9 1724 450 230 9 57 chr6 149370037 149370143 -146894 - B1_Mur2 SINE Alu -2 147 47 9 1724 419 276 98 58 chr6 149370654 149370827 -146210 - B3A SINE B2 -16 182 3 9 1724 606 190 5 21 chr6 149371982 149372118 -144919 + B3 SINE B2 1 129 -69 9 1724 1028 235 98 32 chr6 149372071 149372501 -144536 - RMER20B LTR ERVK -21 606 90 9 1724 338 207 194 97 chr6 149372573 149372707 -144330 + B3 SINE B2 67 213 -3 9 1724 933 183 64 34 chr6 149372695 149373046 -143991 + RMER4A LTR ERVK 1 466 0 9 1724 254 298 176 30 chr6 149374746 149375231 -141806 - L1ME3B LINE L1 -22 6218 5645 9 1724 358 193 124 11 chr6 149375583 149375672 -141365 - RMER5 LTR ERV1 -357 177 79 9 1724 4892 128 16 8 chr6 149375755 149376486 -140551 - RMER19A LTR ERVK 0 737 1 9 1724 21 0 0 0 chr6 149376502 149376523 -140514 + AT_rich Low_complexity Low_complexity 1 21 0 9 1724 245 197 0 16 chr6 149376765 149376827 -140210 + GA-rich Low_complexity Low_complexity 2 62 0 9 1724 796 223 72 69 chr6 149378019 149378323 -138714 - L1_Mur3 LINE L1 -6416 1296 992 9 1724 825 198 88 12 chr6 149378441 149378681 -138356 - Lx9 LINE L1 -9 7635 7378 9 1724 923 230 32 64 chr6 149378714 149378932 -138105 - B3 SINE B2 -5 211 1 9 1724 335 357 40 35 chr6 149379105 149379279 -137758 - LTR86B1 LTR ERVL -3 490 316 9 1724 28 48 0 0 chr6 149379533 149379575 -137462 + AT_rich Low_complexity Low_complexity 1 42 0 9 1724 237 283 0 32 chr6 149379576 149379638 -137399 - LTR86B1 LTR ERVL -386 101 42 9 1724 2088 139 68 5 chr6 149379661 149380059 -136978 + Lx LINE L1 6229 6651 -3 9 1724 194 81 0 26 chr6 149380062 149380100 -136937 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 9 1724 745 268 28 51 chr6 149380390 149380606 -136431 - B3 SINE B2 -4 212 2 9 1724 267 321 24 12 chr6 149380937 149381019 -136018 - ID4_ SINE ID 0 83 1 9 1724 1193 74 0 0 chr6 149381168 149381316 -135721 + B1_Mus1 SINE Alu 1 148 0 9 1724 205 186 0 0 chr6 149381316 149381359 -135678 + A-rich Low_complexity Low_complexity 1 43 0 9 1724 1205 96 0 6 chr6 149381473 149381652 -135385 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 9 1724 982 162 10 61 chr6 149383129 149383326 -133711 - B2_Mm2 SINE B2 -8 187 1 9 1724 5883 171 53 11 chr6 149383424 149384524 -132513 - Lx5 LINE L1 -1 7049 5904 9 1724 10994 137 40 98 chr6 149384524 149387334 -129703 - L1_Mur2 LINE L1 -2315 3562 919 9 1724 1022 218 56 0 chr6 149387441 149387638 -129399 - B3 SINE B2 0 216 9 9 1724 381 70 0 0 chr6 149387673 149387730 -129307 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1724 303 257 14 0 chr6 149387802 149387872 -129165 - RSINE1 SINE B4 -91 74 4 9 1724 681 249 69 113 chr6 149388425 149388635 -128402 - RMER10A LTR ERVL -58 384 202 9 1724 3639 43 67 0 chr6 149388635 149389080 -127957 - MT2C_Mm LTR ERVL 0 475 1 9 1724 681 249 69 113 chr6 149389080 149389259 -127778 - RMER10A LTR ERVL -241 201 12 9 1724 628 231 52 0 chr6 149389340 149389474 -127563 - B1_Mur1 SINE Alu -7 142 2 9 1724 35 41 0 0 chr6 149389637 149389686 -127351 + AT_rich Low_complexity Low_complexity 1 49 0 9 1724 558 272 13 39 chr6 149389728 149389881 -127156 - RSINE1 SINE B4 -14 151 3 9 1724 357 304 0 0 chr6 149390143 149390222 -126815 - ID2 SINE ID -3 80 2 9 1724 3269 35 2 5 chr6 149390252 149390651 -126386 - L1Md_F3 LINE L1 0 6584 6187 9 1724 292 290 16 0 chr6 149391089 149391151 -125886 + ID_B1 SINE B4 84 146 -78 9 1724 369 109 0 0 chr6 149391776 149391831 -125206 + (A)n Simple_repeat Simple_repeat 1 55 0 9 1724 282 87 0 0 chr6 149391865 149391911 -125126 + (T)n Simple_repeat Simple_repeat 1 46 0 9 1724 1213 48 0 0 chr6 149391911 149392058 -124979 - B1_Mm SINE Alu 0 147 1 9 1724 379 271 0 0 chr6 149392297 149392382 -124655 - BC1_Mm scRNA scRNA -67 85 1 9 1724 2188 90 0 60 chr6 149392890 149393243 -123794 + L1Md_F2 LINE L1 6250 6581 -1 9 1724 657 262 26 20 chr6 149393901 149394053 -122984 + RSINE1 SINE B4 11 163 -2 9 1724 25 51 0 0 chr6 149394055 149394094 -122943 + AT_rich Low_complexity Low_complexity 1 39 0 9 1724 236 152 17 17 chr6 149394175 149394235 -122802 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 1 1724 6215 93 40 28 chr6 149394473 149395419 -121618 - RMER17B LTR ERVK 0 958 1 1 1724 262 343 21 96 chr6 149395529 149395716 -121321 - B4A SINE B4 -117 175 3 1 1724 247 359 0 0 chr6 149395724 149395802 -121235 - ID4_ SINE ID -4 79 2 1 1724 422 265 51 0 chr6 149396128 149396226 -120811 - RSINE1 SINE B4 -54 111 9 1 1724 298 258 22 22 chr6 149396352 149396443 -120594 + MIR SINE MIR 72 162 -100 1 1724 1166 264 73 20 chr6 149396479 149396820 -120217 + ORR1E LTR MaLR 1 359 0 1 1724 261 283 0 0 chr6 149396825 149396885 -120152 + MER20 DNA MER1_type 93 152 -67 1 1724 205 239 30 0 chr6 149396968 149397035 -120002 + (TA)n Simple_repeat Simple_repeat 2 70 0 1 1724 312 215 139 0 chr6 149397219 149397298 -119739 + MER20 DNA MER1_type 65 154 -65 1 1724 393 284 129 30 chr6 149397531 149397578 -119459 - CYRA11_Mm Unknown Y-chromosome -180 437 368 1 1724 939 180 153 0 chr6 149397578 149397767 -119270 + URR1A DNA MER1_type 1 218 -8 1 1724 582 130 0 11 chr6 149397917 149398010 -119027 - B1_Mus2 SINE Alu 0 147 56 1 1724 234 0 0 0 chr6 149398055 149398081 -118956 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1724 485 300 92 42 chr6 149398206 149398446 -118591 - RLTR12B LTR ERVK -230 298 47 1 1724 2050 192 143 68 chr6 149398515 149399292 -117745 + RMER6C LTR ERVK 1 708 -12 1 1724 229 182 36 0 chr6 149399783 149399838 -117199 + A-rich Low_complexity Low_complexity 5 61 0 1 1724 189 340 18 110 chr6 149400357 149400466 -116571 + MIRc SINE MIR 56 154 -114 1 1724 396 182 25 38 chr6 149400883 149400963 -116074 - PB1D10 SINE Alu -2 115 37 1 1724 243 0 0 0 chr6 149401000 149401027 -116010 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 1724 1045 16 16 0 chr6 149401192 149401321 -115716 + MTA_Mm LTR MaLR 1 131 -265 1 1724 34 42 0 0 chr6 149402008 149402056 -114981 + AT_rich Low_complexity Low_complexity 1 48 0 1 1724 1041 201 39 5 chr6 149402430 149402635 -114402 - B3 SINE B2 -4 212 1 1 1724 387 141 0 0 chr6 149402753 149402817 -114220 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1724 523 241 80 0 chr6 149402824 149402936 -114101 - B1_Mur1 SINE Alu -26 123 3 1 1724 26 30 0 0 chr6 149402980 149403013 -114024 + AT_rich Low_complexity Low_complexity 1 33 0 1 1724 1530 53 16 0 chr6 149403387 149403576 -113461 + B2_Mm2 SINE B2 2 193 -2 1 1724 325 208 0 132 chr6 149404163 149404246 -112791 - RLTR14 LTR ERV1 -310 72 1 1 1724 279 0 0 0 chr6 149404329 149404360 -112677 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1724 1087 53 0 0 chr6 149404360 149404493 -112544 - B1_Mus1 SINE Alu -11 137 5 1 1724 3025 82 12 0 chr6 149404493 149404909 -112128 - BGLII LTR ERVK 0 421 1 1 1724 227 151 118 40 chr6 149404933 149405009 -112028 - Lx8 LINE L1 0 7473 7392 1 1724 995 250 201 0 chr6 149405022 149405346 -111691 - Lx8 LINE L1 -898 6575 6187 1 1724 802 222 0 0 chr6 149405453 149405597 -111440 - B1_Mur1 SINE Alu -5 144 1 1 1724 533 285 61 157 chr6 149405787 149406132 -110905 + RLTR18 LTR ERVK 1 312 -304 1 1724 791 293 83 36 chr6 149406180 149406481 -110556 + RLTR18B LTR ERVK 192 506 -6 1 1724 192 77 0 0 chr6 149406790 149406816 -110221 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1724 1092 75 0 7 chr6 149406816 149406963 -110074 - B1_Mus2 SINE Alu 0 147 2 1 1724 370 262 28 0 chr6 149407137 149407244 -109793 - PB1D10 SINE Alu -7 110 1 1 1724 2965 56 200 9 chr6 149407853 149408283 -108754 - RLTR1B LTR ERV1 0 512 1 1 1724 262 158 35 0 chr6 149408606 149408663 -108374 - B3 SINE B2 0 216 158 1 1724 965 98 18 6 chr6 149408696 149408860 -108177 + L1_Mus3 LINE L1 6471 6636 -2 1 1724 368 209 99 0 chr6 149409415 149409506 -107531 + MER3 DNA MER1_type 110 209 0 1 1724 1588 184 110 40 chr6 149409522 149409947 -107090 - RMER16 LTR ERVK 0 533 1 1 1724 36 0 0 0 chr6 149409976 149410012 -107025 + AT_rich Low_complexity Low_complexity 1 36 0 1 1724 1795 214 194 47 chr6 149410012 149410242 -106795 - RLTR21 LTR ERVK -4 1568 1287 1 1724 234 0 0 0 chr6 149410242 149410268 -106769 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1724 1795 214 194 47 chr6 149410268 149410413 -106624 - RLTR21 LTR ERVK -286 1286 1117 1 1724 207 100 0 0 chr6 149410413 149410443 -106594 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1 1724 1795 214 194 47 chr6 149410443 149410727 -106310 - RLTR21 LTR ERVK -456 1116 812 1 1724 378 0 0 0 chr6 149410727 149410769 -106268 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1 1724 1199 48 0 0 chr6 149410769 149410914 -106123 - B1_Mus1 SINE Alu -2 146 2 1 1724 262 284 42 92 chr6 149411196 149411316 -105721 + MER110A LTR ERV1 80 193 -275 1 1724 408 88 0 0 chr6 149411433 149411490 -105547 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1724 437 295 57 0 chr6 149411490 149411595 -105442 - ID_B1 SINE B4 -10 214 104 1 1724 6598 103 68 18 chr6 149411690 149412990 -104047 + Lx LINE L1 5288 6637 -17 1 1724 1156 68 0 0 chr6 149413074 149413222 -103815 + B1_Mus1 SINE Alu 1 148 0 1 1724 445 235 8 8 chr6 149413222 149413355 -103682 + GA-rich Low_complexity Low_complexity 3 135 0 1 1724 378 208 17 4 chr6 149413484 149413560 -103477 + PB1D9 SINE Alu 1 76 -41 1 1724 234 350 16 8 chr6 149414098 149414219 -102818 - RMER12B LTR ERVK -618 786 665 1 1724 181 139 0 44 chr6 149414306 149414351 -102686 + CT-rich Low_complexity Low_complexity 3 45 0 1 1724 3007 90 29 47 chr6 149414482 149414973 -102064 - RLTR45 LTR ERVK 0 482 1 1 1724 4548 42 0 0 chr6 149414973 149415503 -101534 - RLTR45-int LTR ERVK 0 7244 6715 1 1724 3525 48 0 0 chr6 149415503 149415921 -101116 - RLTR45-int LTR ERVK -734 6510 6093 1 1724 3753 36 2 2 chr6 149415911 149416361 -100676 - RLTR45-int LTR ERVK -1731 5513 5064 1 1724 17346 42 32 22 chr6 149416353 149416455 -100582 - RLTR45-int LTR ERVK -3258 3986 3893 1 1724 2200 11 114 0 chr6 149416455 149416717 -100320 - RLTR10B LTR ERVK 0 292 1 1 1724 17346 42 32 22 chr6 149416717 149418928 -98109 - RLTR45-int LTR ERVK -3352 3892 1649 1 1724 480 95 15 5 chr6 149419014 149419095 -97942 - RLTR13B1 LTR ERVK -299 594 456 1 1724 2202 23 0 8 chr6 149419261 149419520 -97517 - RLTR45-int LTR ERVK -5037 2207 1951 1 1724 3688 75 52 24 chr6 149419677 149420306 -96731 - RLTR45-int LTR ERVK -5596 1648 967 1 1724 883 59 126 0 chr6 149420303 149420422 -96615 - RLTR45-int LTR ERVK -6419 825 692 1 1724 3049 68 26 115 chr6 149420588 149421117 -95920 - RLTR45 LTR ERVK 0 482 1 1 1724 4773 59 79 5 chr6 149421313 149421957 -95080 - RLTR45-int LTR ERVK -6552 692 1 1 215 3036 91 24 49 chr6 149421957 149422451 -94586 - RLTR45 LTR ERVK 0 482 1 1 1725 278 0 54 0 chr6 149422453 149422490 -94547 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1725 1201 48 0 0 chr6 149422497 149422642 -94395 - B1_Mm SINE Alu -1 146 2 1 1725 1006 329 60 49 chr6 149422943 149423966 -93071 - RMER12B LTR ERVK -189 1215 7 1 1725 279 358 60 65 chr6 149424042 149424227 -92810 - MLT1J LTR MaLR -86 426 243 1 1725 333 175 18 0 chr6 149424553 149424610 -92427 - B1F SINE Alu 0 149 92 1 1725 4632 109 68 6 chr6 149424654 149425348 -91689 + RMER19A LTR ERVK 1 737 0 1 1725 830 54 0 9 chr6 149425682 149425795 -91242 + (TTC)n Simple_repeat Simple_repeat 1 112 0 1 1725 288 111 0 0 chr6 149425803 149425848 -91189 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1725 439 294 20 0 chr6 149425875 149425977 -91060 - B4A SINE B4 -65 227 124 1 1725 1835 188 239 54 chr6 149425989 149426721 -90316 + RMER6C LTR ERVK 1 720 0 1 1725 511 293 24 16 chr6 149426722 149426847 -90190 - B4A SINE B4 -165 127 2 1 1725 1078 204 0 16 chr6 149427639 149427828 -89209 + B3 SINE B2 31 216 0 1 1725 228 203 26 26 chr6 149428411 149428487 -88550 + A-rich Low_complexity Low_complexity 3 78 0 1 1725 22 35 0 0 chr6 149428492 149428521 -88516 + AT_rich Low_complexity Low_complexity 1 29 0 1 1725 527 141 0 0 chr6 149429301 149429379 -87658 - B2_Mm2 SINE B2 -116 79 2 1 1725 714 292 20 45 chr6 149429492 149429693 -87344 + B3A SINE B2 3 198 0 1 1725 202 143 24 0 chr6 149429702 149429744 -87293 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 1 1725 183 42 0 0 chr6 149429804 149429828 -87209 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1725 237 83 0 0 chr6 149429828 149429864 -87173 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1725 335 256 88 29 chr6 149429864 149430001 -87036 + HAL1-3A_ME LINE L1 1976 2120 -738 1 1725 1616 189 64 72 chr6 149430298 149430615 -86422 + RMER1C Other Other 854 1163 -179 1 1725 1990 132 0 77 chr6 149430615 149430688 -86349 - RLTR10E LTR ERVK 0 311 264 1 1725 1197 54 0 0 chr6 149430688 149430835 -86202 - B1_Mus2 SINE Alu 0 147 1 1 1725 1990 132 0 77 chr6 149430835 149431098 -85939 - RLTR10E LTR ERVK -48 263 1 1 1725 1616 189 64 72 chr6 149431098 149431184 -85853 + RMER1C Other Other 1164 1254 -88 1 1725 1660 175 122 53 chr6 149431196 149431772 -85265 + Lx LINE L1 5929 6654 0 1 1725 1178 68 0 0 chr6 149432061 149432208 -84829 - B1_Mus2 SINE Alu 0 147 1 1 1725 294 95 0 0 chr6 149432335 149432377 -84660 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1 1725 279 283 115 62 chr6 149432736 149432849 -84188 - MTEa LTR MaLR -255 124 6 1 1725 1465 45 0 6 chr6 149432899 149433076 -83961 - B2_Mm2 SINE B2 -19 176 1 1 1725 477 0 0 0 chr6 149433141 149433194 -83843 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1725 1518 151 68 74 chr6 149433209 149433546 -83491 + RMER1C Other Other 1006 1340 -2 1 1725 899 191 4 11 chr6 149434368 149434635 -82402 + GA-rich Low_complexity Low_complexity 1 265 0 1 1725 404 243 36 67 chr6 149434833 149435027 -82010 - L1ME1 LINE L1 -2019 5976 5789 1 1725 781 227 64 7 chr6 149435036 149435209 -81828 + B3 SINE B2 38 216 0 1 1725 325 345 118 70 chr6 149435251 149435581 -81456 - MLT1A0 LTR MaLR -19 346 1 1 1725 764 284 77 4 chr6 149435622 149435894 -81143 - L2 LINE L2 -1135 2284 1993 1 1725 1966 159 31 60 chr6 149435894 149436309 -80728 - RLTR22_Mur LTR ERVK -1445 403 1 1 1725 291 151 0 19 chr6 149436310 149436364 -80673 + MLT1A1 LTR MaLR 337 389 -19 1 1725 336 356 116 0 chr6 149436728 149436874 -80163 + MIR SINE MIR 71 233 -29 1 1725 355 275 67 29 chr6 149437091 149437196 -79841 + PB1D7 SINE Alu 12 120 0 1 1725 343 298 21 0 chr6 149437231 149437325 -79712 + ID_B1 SINE B4 107 202 -22 1 1725 383 306 69 125 chr6 149437362 149437665 -79372 - ORR1E LTR MaLR 0 359 74 1 1725 447 302 85 31 chr6 149437773 149437903 -79134 - ID_B1 SINE B4 -4 220 84 1 1725 231 36 0 0 chr6 149437925 149437953 -79084 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 1725 374 120 79 4 chr6 149437981 149438061 -78976 - B2_Mm2 SINE B2 -118 98 2 1 1725 1370 68 11 0 chr6 149438061 149438237 -78800 - B2_Mm1t SINE B2 -14 179 2 1 1725 1180 35 0 14 chr6 149439060 149439207 -77830 + B1_Mus2 SINE Alu 3 147 0 1 1725 2247 193 12 2 chr6 149439240 149439645 -77392 + Lx9 LINE L1 7070 7478 -166 1 1725 387 0 0 0 chr6 149439646 149439689 -77348 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1725 638 135 16 0 chr6 149439691 149439817 -77220 + Lx9 LINE L1 7517 7644 0 1 1725 614 147 371 13 chr6 149439956 149440115 -76922 - B3 SINE B2 0 216 1 1 1725 618 152 19 0 chr6 149440219 149440324 -76713 - B1F2 SINE Alu 0 149 43 1 1725 267 320 90 0 chr6 149440353 149440453 -76584 - MER34 LTR ERV1 -278 264 156 1 1725 319 266 12 12 chr6 149440704 149440784 -76253 + G-rich Low_complexity Low_complexity 5 84 0 1 1725 1358 91 38 0 chr6 149441521 149441707 -75330 - B2_Mm2 SINE B2 -2 193 1 1 1725 289 324 36 0 chr6 149442064 149442175 -74862 - PB1D10 SINE Alu 0 117 3 1 1725 31 0 0 0 chr6 149442185 149442216 -74821 + AT_rich Low_complexity Low_complexity 1 31 0 1 1725 890 189 132 0 chr6 149442227 149442417 -74620 - B3 SINE B2 0 216 2 1 1725 238 312 45 18 chr6 149442664 149442775 -74262 - L1MC LINE L1 -2217 5665 5552 1 1725 1619 21 11 0 chr6 149442775 149442964 -74073 + B2_Mm1a SINE B2 3 193 0 1 1725 267 255 19 38 chr6 149443712 149443980 -73057 + CT-rich Low_complexity Low_complexity 1 262 0 1 1725 1064 290 32 70 chr6 149444175 149444546 -72491 - ORR1E LTR MaLR -2 357 1 1 1725 1530 297 253 30 chr6 149444548 149445107 -71930 - ORR1E-int LTR MaLR -9 1361 678 1 1725 1507 268 84 20 chr6 149445125 149445567 -71470 - ORR1E-int LTR MaLR -1108 472 3 1 1725 697 245 232 32 chr6 149445568 149445884 -71153 - ORR1E LTR MaLR 0 379 1 1 1725 3614 100 66 0 chr6 149446961 149447490 -69547 + Lx LINE L1 6091 6654 0 1 1725 538 96 0 0 chr6 149447522 149447595 -69442 + L1Md_F2 LINE L1 262 334 -6282 1 1725 35777 62 1 3 chr6 149447587 149453534 -63503 + L1Md_F2 LINE L1 670 6582 0 1 1725 538 328 16 57 chr6 149453667 149453861 -63176 - MER58A DNA MER1_type -38 186 1 1 1725 647 112 9 0 chr6 149455010 149455117 -61920 - Lx2 LINE L1 0 6997 6890 1 1725 21 0 0 0 chr6 149455132 149455153 -61884 + AT_rich Low_complexity Low_complexity 1 21 0 1 1725 240 111 0 0 chr6 149455169 149455205 -61832 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1725 29 0 0 0 chr6 149455242 149455271 -61766 + AT_rich Low_complexity Low_complexity 1 29 0 1 1725 326 320 10 40 chr6 149455271 149455372 -61665 - RSINE1 SINE B4 -65 100 3 1 1725 1931 197 35 22 chr6 149455939 149456107 -60930 + ORR1D1 LTR MaLR 1 177 -197 1 1725 792 0 0 0 chr6 149456107 149456195 -60842 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1725 1931 197 35 22 chr6 149456195 149456395 -60642 + ORR1D1 LTR MaLR 178 374 0 1 1725 3043 208 28 7 chr6 149456395 149457001 -60036 + ORR1D1-int LTR MaLR 1 619 -751 1 1725 2362 170 43 28 chr6 149457011 149457471 -59566 + ORR1D1-int LTR MaLR 857 1323 -47 1 1725 1905 220 14 3 chr6 149457495 149457859 -59178 + ORR1D1 LTR MaLR 7 374 0 1 1725 207 0 0 0 chr6 149458102 149458125 -58912 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1725 1028 37 89 0 chr6 149458141 149458276 -58761 + B1_Mm SINE Alu 1 147 0 1 1725 263 363 123 16 chr6 149458481 149458789 -58248 + MLT1J LTR MaLR 168 508 -4 1 1725 838 191 0 13 chr6 149459106 149459255 -57782 - B1_Mur1 SINE Alu -1 148 2 1 1725 326 93 37 0 chr6 149459268 149459322 -57715 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 1 1725 955 172 0 0 chr6 149459322 149459467 -57570 - B1_Mus2 SINE Alu -1 146 2 1 1725 22 88 0 0 chr6 149459596 149459653 -57384 + AT_rich Low_complexity Low_complexity 1 57 0 1 1725 485 154 9 0 chr6 149459952 149460062 -56975 + (TA)n Simple_repeat Simple_repeat 2 112 0 1 1725 24 32 0 0 chr6 149460900 149460931 -56106 + AT_rich Low_complexity Low_complexity 1 31 0 1 1725 285 203 33 17 chr6 149462585 149462645 -54392 + RSINE1 SINE B4 2 62 -103 1 1725 441 0 0 0 chr6 149462648 149462697 -54340 + (TTAG)n Simple_repeat Simple_repeat 3 51 0 1 1725 420 20 0 0 chr6 149462877 149462926 -54111 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1725 1194 55 0 0 chr6 149463597 149463742 -53295 + B1_Mm SINE Alu 3 147 0 1 1725 206 220 63 63 chr6 149464332 149464395 -52642 - L2c LINE L2 -38 3349 3287 1 1725 189 0 0 0 chr6 149465859 149465880 -51157 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 1725 21 0 0 0 chr6 149466108 149466129 -50908 + AT_rich Low_complexity Low_complexity 1 21 0 1 1725 519 282 122 5 chr6 149467127 149467316 -49721 - Tigger7 DNA MER2_type -9 2482 2272 1 1725 1612 31 0 20 chr6 149468331 149468527 -48510 - B2_Mm1a SINE B2 0 193 2 1 1725 315 284 94 35 chr6 149469764 149469991 -47046 + MER102a DNA MER1_type 74 307 -23 1 1725 907 239 66 0 chr6 149470140 149470337 -46700 + B3 SINE B2 1 210 -6 1 1725 373 239 7 7 chr6 149470481 149470620 -46417 + (CATATA)n Simple_repeat Simple_repeat 4 142 0 1 1725 908 231 10 25 chr6 149471046 149471246 -45791 - B3A SINE B2 0 198 2 1 1725 441 101 228 33 chr6 149471776 149471868 -45169 + B1_Mur4 SINE Alu 41 150 0 1 1725 2806 75 25 30 chr6 149471910 149472115 -44922 - MTB LTR MaLR 0 400 197 1 1725 261 0 0 0 chr6 149472115 149472144 -44893 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1725 1140 51 0 0 chr6 149472144 149472282 -44755 - B1_Mm SINE Alu -9 138 1 1 1725 2806 75 25 30 chr6 149472282 149472473 -44564 - MTB LTR MaLR -204 196 6 1 1725 555 56 0 0 chr6 149472473 149472544 -44493 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 1725 26 82 0 0 chr6 149472568 149472629 -44408 + AT_rich Low_complexity Low_complexity 1 61 0 1 1725 919 224 0 11 chr6 149472629 149472810 -44227 - B3 SINE B2 -3 213 35 1 1725 22 0 0 0 chr6 149473065 149473087 -43950 + AT_rich Low_complexity Low_complexity 1 22 0 1 1725 34 65 0 0 chr6 149473098 149473160 -43877 + AT_rich Low_complexity Low_complexity 1 62 0 1 1725 1467 63 5 16 chr6 149473249 149473442 -43595 - B2_Mm1a SINE B2 -2 191 1 1 1725 1060 115 0 0 chr6 149473445 149473593 -43444 - B1_Mus1 SINE Alu 0 148 1 1 1725 1570 40 5 0 chr6 149473814 149474015 -43022 + L1Md_F2 LINE L1 6379 6580 -2 1 1725 731 265 54 5 chr6 149474129 149474334 -42703 + B3 SINE B2 2 216 0 1 1725 262 289 61 82 chr6 149474818 149474982 -42055 + RLTR41 LTR ERV1 251 538 -49 1 1725 1450 78 5 0 chr6 149475144 149475335 -41702 - B2_Mm1t SINE B2 -1 192 1 1 1725 2339 164 53 11 chr6 149475409 149475842 -41195 - Lx3C LINE L1 -7 6969 6519 1 1725 22219 44 0 1 chr6 149476346 149479817 -37220 - L1Md_F3 LINE L1 -14 6570 3102 1 1725 529 268 25 139 chr6 149480287 149480525 -36512 - B3 SINE B2 -5 211 1 1 1725 378 46 62 0 chr6 149480813 149480878 -36159 - L1Md_F3 LINE L1 -1 6583 6515 1 1725 238 367 0 0 chr6 149481010 149481070 -35967 - tRNA-Ala-GCY_ tRNA tRNA -15 60 1 1 1725 213 316 53 0 chr6 149481211 149481268 -35769 + ID4 SINE ID 10 69 -14 1 1725 1332 87 16 11 chr6 149481401 149481587 -35450 - B2_Mm2 SINE B2 -8 187 1 1 1725 1128 68 0 20 chr6 149481803 149481952 -35085 - B1_Mus2 SINE Alu 0 147 2 1 1725 8476 26 0 0 chr6 149482720 149483755 -33282 - L1Md_T LINE L1 -1 6581 5547 1 1725 466 213 64 0 chr6 149484049 149484143 -32894 - B1_Mur1 SINE Alu -21 128 29 1 1725 21 0 0 0 chr6 149484211 149484232 -32805 + AT_rich Low_complexity Low_complexity 1 21 0 1 1725 1049 225 5 16 chr6 149484351 149484545 -32492 - ID_B1 SINE B4 -18 206 15 1 1725 401 271 89 41 chr6 149484652 149484775 -32262 + B1F SINE Alu 19 147 -2 1 1725 646 300 66 57 chr6 149485503 149485715 -31322 + B4A SINE B4 2 215 -77 1 1725 30 27 0 0 chr6 149486071 149486108 -30929 + AT_rich Low_complexity Low_complexity 1 37 0 1 1725 27 29 0 0 chr6 149488439 149488473 -28564 + AT_rich Low_complexity Low_complexity 1 34 0 1 1725 188 298 0 0 chr6 149489082 149489129 -27908 - MIRc SINE MIR -49 219 173 1 1725 972 60 113 0 chr6 149489188 149489321 -27716 + B1_Mus1 SINE Alu 1 148 0 1 1725 904 265 137 12 chr6 149489474 149489802 -27235 - ORR1D2 LTR MaLR -1 369 1 1 1725 5930 85 17 9 chr6 149489887 149490755 -26282 + RLTR22_Mur LTR ERVK 1 875 -973 1 1725 600 267 53 67 chr6 149490940 149491165 -25872 + RMER12 LTR ERVK 1101 1322 0 1 1725 225 83 0 0 chr6 149491483 149491519 -25518 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1725 1135 89 0 0 chr6 149491519 149491665 -25372 - B1_Mus2 SINE Alu 0 147 2 1 1725 193 146 20 20 chr6 149491696 149491745 -25292 + (CATA)n Simple_repeat Simple_repeat 4 52 0 1 1725 956 288 88 78 chr6 149491976 149492349 -24688 - MLT1B LTR MaLR -4 386 10 1 1725 191 288 81 48 chr6 149492381 149492443 -24594 + MIRb SINE MIR 25 88 -180 1 1725 1000 218 87 34 chr6 149492447 149492789 -24248 + MTD LTR MaLR 1 412 -7 1 1725 2043 115 17 105 chr6 149492795 149492888 -24149 - ORR1A4 LTR MaLR 0 329 273 1 1725 1163 55 0 7 chr6 149492888 149493036 -24001 - B1_Mus2 SINE Alu 0 147 1 1 1725 2043 115 17 105 chr6 149493036 149493303 -23734 - ORR1A4 LTR MaLR -57 272 1 1 1725 293 298 138 0 chr6 149493458 149493552 -23485 + PB1D10 SINE Alu 3 109 -8 1 1725 288 77 0 0 chr6 149493555 149493594 -23443 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1725 227 239 67 86 chr6 149494225 149494237 -22800 + MT2B LTR ERVL 151 160 -441 1 1725 342 314 67 0 chr6 149494237 149494342 -22695 + PB1D7 SINE Alu 1 112 -8 1 1725 392 256 13 0 chr6 149495008 149495086 -21951 + ID4_ SINE ID 1 79 -4 1 1725 955 68 98 0 chr6 149496840 149496972 -20065 + B1_Mm SINE Alu 2 146 -1 1 1725 21 36 0 0 chr6 149496995 149497023 -20014 + AT_rich Low_complexity Low_complexity 1 28 0 1 1725 645 236 43 0 chr6 149497062 149497202 -19835 - B1_Mur1 SINE Alu -2 147 2 1 1725 824 220 67 48 chr6 149497232 149497442 -19595 + B3 SINE B2 3 216 0 1 1725 24 0 0 0 chr6 149498264 149498288 -18749 + AT_rich Low_complexity Low_complexity 1 24 0 1 1725 389 238 84 8 chr6 149499399 149499530 -17507 + B1F SINE Alu 1 141 -8 1 1725 1077 77 0 27 chr6 149499665 149499801 -17236 + B1_Mus1 SINE Alu 1 136 -12 1 1725 369 0 0 0 chr6 149499801 149499842 -17195 + (CAAAA)n Simple_repeat Simple_repeat 4 44 0 1 1725 303 267 0 13 chr6 149500303 149500379 -16658 - ID4 SINE ID -8 75 1 1 1725 993 237 23 14 chr6 149500519 149500733 -16304 - B3 SINE B2 0 216 1 2 1725 212 303 52 13 chr6 149500990 149501067 -15970 + MIR SINE MIR 26 105 -157 3 1725 1476 73 5 0 chr6 149501276 149501467 -15570 + B2_Mm1t SINE B2 2 193 0 4 1725 226 310 144 12 chr6 149501790 149501950 -15087 - MIR SINE MIR 0 262 82 5 1725 497 273 0 83 chr6 149502367 149502499 -14538 - PB1 SINE Alu -1 126 6 6 1725 37 0 0 0 chr6 149502749 149502786 -14251 + AT_rich Low_complexity Low_complexity 1 37 0 7 1725 198 0 0 0 chr6 149502845 149502867 -14170 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 8 1725 1369 84 16 0 chr6 149502947 149503137 -13900 + B2_Mm2 SINE B2 1 193 -2 9 1725 36 53 0 0 chr6 149503248 149503305 -13732 + AT_rich Low_complexity Low_complexity 1 57 0 1 1725 213 369 15 0 chr6 149503899 149503964 -13073 + ID4_ SINE ID 16 81 -2 1 1725 473 308 20 0 chr6 149504708 149504854 -12183 + MER5A1 DNA MER1_type 18 166 0 1 1725 342 0 0 0 chr6 149506064 149506102 -10935 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1725 180 0 0 0 chr6 149507925 149507945 -9092 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1725 210 71 0 0 chr6 149507947 149507975 -9062 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1725 668 314 0 0 chr6 149507978 149508118 -8919 - RSINE1 SINE B4 -24 141 2 1 1725 23 33 0 0 chr6 149508690 149508720 -8317 + AT_rich Low_complexity Low_complexity 1 30 0 1 1725 40 37 0 0 chr6 149510274 149510328 -6709 + AT_rich Low_complexity Low_complexity 1 54 0 1 1725 602 144 41 0 chr6 149510329 149510426 -6611 - B1_Mur4 SINE Alu -2 148 48 1 1725 219 261 157 98 chr6 149512023 149512125 -4912 + PB1 SINE Alu 18 125 -2 2 1725 567 68 34 11 chr6 149512184 149512273 -4764 - RMER12 LTR ERVK -49 1273 1183 2 1725 252 0 0 0 chr6 149512274 149512302 -4735 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1725 450 0 0 0 chr6 149512302 149512351 -4686 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1725 445 148 12 12 chr6 149512419 149512501 -4536 + RMER15 LTR ERVL 4 85 -490 2 1725 600 262 18 0 chr6 149512507 149512671 -4366 - Lx6 LINE L1 -127 7333 7167 2 1725 278 305 65 41 chr6 149512676 149512799 -4238 + B3 SINE B2 38 163 -53 2 1725 432 130 0 0 chr6 149512804 149512873 -4164 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 1725 262 272 36 24 chr6 149513380 149513463 -3574 + MT2A LTR ERVL 33 116 -417 2 1725 1239 260 72 26 chr6 149513463 149513893 -3144 + MT2A LTR ERVL 83 532 -1 2 1725 217 119 48 0 chr6 149513918 149513960 -3077 + T-rich Low_complexity Low_complexity 2 45 0 2 1725 235 164 18 0 chr6 149514993 149515048 -1989 - L1MC LINE L1 -1124 5022 4967 3 1725 806 212 179 5 chr6 149515138 149515356 -1681 - RLTR22_Mur LTR ERVK 0 1848 1593 3 1725 207 0 0 0 chr6 149515457 149515480 -1557 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1725 348 241 84 35 chr6 149515493 149515635 -1402 - RLTR22_Mur LTR ERVK -827 1021 873 3 1725 1812 171 54 9 chr6 149515626 149516003 -1034 - RLTR22_Mur LTR ERVK -288 1116 413 3 1725 2434 153 64 16 chr6 149516462 149516899 -138 - RMER4A LTR ERVK -3 463 6 3 1725 25 0 0 0 chr6 149516946 149516971 -66 + AT_rich Low_complexity Low_complexity 1 25 0 3